Sender: LSF System <lsf@node1649>
Subject: Job 8004738: <iteration_227015> Done

Job <iteration_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1649>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015> was used as the working directory.
Started at Mon Nov 12 01:33:52 2012
Results reported at Mon Nov 12 01:33:54 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
echo starting
ls iteration*/exited 2>&1
return_code=$?
if [ ${return_code} -eq 0 ]; then
echo some scatter or gather jobs failed;
echo ${return_code} > exited;
exit 1;
fi
ls exited 2>&1
return_code=$?
if [ ${return_code} -eq 0 ]; then
echo previous iteration failed;
echo ${return_code} > exited;
exit 1;
fi
/xchip/tcga/gdac_prod/source/analysis_pipeline/scripts/scatter-gather-iterator.py /xchip/tcga/gdac_prod/source/analysis_pipeline/scripts/iterative-scatter-gather.py --job-suffix 227015 --priority 65 cga /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/scatter-gather.xml /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
return_code=$?
if [ ${return_code} -ne 0 ]; then
echo iterator failed ${return_code};
echo ${return_code} > exited;
exit ${return_code};
fi
cat iteration1/jobSubmissions.txt >> jobSubmissions.txt
rm -f iteration1/jobSubmissions.txt
echo '*** Scatter Gather stdandard out:' 2>&1
cat iteration1/scatter-gather.out.txt 2>&1
rm -f iteration1/scatter-gather.out.txt 2>&1
echo '*** Scatter Gather stdandard err:' 2>&1
cat iteration1/scatter-gather.err.txt 2>&1
rm -f iteration1/scatter-gather.err.txt 2>&1
ls iteration1/sg-next-iteration.txt 2>&1
return_code=$?
if [ ${return_code} -eq 0 ]; then
rm -f iteration1/sg-next-iteration.txt
else
rm -f scatterGatherParameters.txt
rm -f programParameters.txt
mv iteration1/* /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015
rmdir iteration*
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :      0.26 sec.
    Max Memory :        10 MB
    Max Swap   :        39 MB

    Max Processes  :         1
    Max Threads    :         1

The output (if any) follows:

starting
ls: iteration*/exited: No such file or directory
ls: exited: No such file or directory
Running scatter-gather-iterator with the following args: /xchip/tcga/gdac_prod/source/analysis_pipeline/scripts/scatter-gather-iterator.py /xchip/tcga/gdac_prod/source/analysis_pipeline/scripts/iterative-scatter-gather.py --job-suffix 227015 --priority 65 cga /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/scatter-gather.xml /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
Finished in 1 iterations
*** Scatter Gather stdandard out:
Sender: LSF System <lsf@node1653>
Subject: Job 8004735: <gather_227015> Done

Job <gather_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1653>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1> was used as the working directory.
Started at Sun Nov 11 22:16:44 2012
Results reported at Mon Nov 12 01:33:45 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
ls scatter.*/exited 2>&1
return_code=$?
if [ ${return_code} -eq 0 ]; then
echo some scatter jobs failed;
echo ${return_code} > exited;
exit 1;
fi
if [ `ls -1 scatter.*/success | wc -l` -ne 200 ]; then
echo expected result files missing, try rerunning;
echo 1 > exited;
exit 1;
fi
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 0  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
echo gather failed;
echo ${return_code} > exited;
exit ${return_code};
fi
rm -f prepareResults.out
echo '*** Prepare stdandard out:' 2>&1
cat prepare.out 2>&1
rm -f prepare.out 2>&1
echo '*** Prepare stdandard err:' 2>&1
cat prepare.err 2>&1
rm -f prepare.err 2>&1
echo '*** Scatter stdandard out:' 2>&1
cat scatter.*/scatter.out 2>&1
rm -f scatter.*/scatter.out 2>&1
echo '*** Scatter stdandard err:' 2>&1
cat scatter.*/scatter.err 2>&1
rm -f scatter.*/scatter.err 2>&1
echo '*** Scatter retry log:'
head scatter.*.tries
echo
rm -f scatter.*.tries
rm -f scatter.*/success
rm -f scatter.*/java.opts
rmdir scatter.*
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  10888.83 sec.
    Max Memory :      6410 MB
    Max Swap   :      7354 MB

    Max Processes  :         9
    Max Threads    :        60

The output (if any) follows:

ls: scatter.*/exited: No such file or directory
fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
0
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 0
                            is_scatter: 0
                             is_gather: 1

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Saved ./LUSC.mutation_filtering_report.txt
Writing coverage to ./LUSC.per_exon.coverage.txt
HUGE STRUCT: SAVING CHUNK 1/4
  [save_struct] 54/188 55/188 56/188 57/188 58/188 59/188 60/188 61/188 62/188 63/188 64/188 65/188 66/188 67/188 68/188 69/188 70/188 71/188 72/188 73/188 74/188 75/188 76/188 77/188 78/188 79/188 80/188 81/188 82/188 83/188 84/188 85/188 86/188 87/188 88/188 89/188 90/188 91/188 92/188 93/188 94/188 95/188 96/188 97/188 98/188 99/188 100/188 101/188 102/188 103/188 104/188 105/188 106/188 107/188 108/188 109/188 110/188 111/188 112/188 113/188 114/188 115/188 116/188 117/188 118/188 119/188 120/188 121/188 122/188 123/188 124/188 125/188 126/188 127/188 128/188 129/188 130/188 131/188 132/188 133/188 134/188 135/188 136/188 137/188 138/188 139/188 140/188 141/188 142/188 143/188 144/188 145/188 146/188 147/188 148/188 149/188 150/188 151/188 152/188 153/188 154/188 155/188 156/188 157/188 158/188 159/188 160/188 161/188 162/188 163/188 164/188 165/188 166/188 167/188 168/188 169/188 170/188 171/188 172/188 173/188 174/188 175/188 176/188 177/188 178/188 179/188 180/188 181/188 182/188 183/188 184/188 185/188 186/188 187/188 188/188  [collapse]
HUGE STRUCT: SAVING CHUNK 2/4
  [save_struct] 55/188 56/188 57/188 58/188 59/188 60/188 61/188 62/188 63/188 64/188 65/188 66/188 67/188 68/188 69/188 70/188 71/188 72/188 73/188 74/188 75/188 76/188 77/188 78/188 79/188 80/188 81/188 82/188 83/188 84/188 85/188 86/188 87/188 88/188 89/188 90/188 91/188 92/188 93/188 94/188 95/188 96/188 97/188 98/188 99/188 100/188 101/188 102/188 103/188 104/188 105/188 106/188 107/188 108/188 109/188 110/188 111/188 112/188 113/188 114/188 115/188 116/188 117/188 118/188 119/188 120/188 121/188 122/188 123/188 124/188 125/188 126/188 127/188 128/188 129/188 130/188 131/188 132/188 133/188 134/188 135/188 136/188 137/188 138/188 139/188 140/188 141/188 142/188 143/188 144/188 145/188 146/188 147/188 148/188 149/188 150/188 151/188 152/188 153/188 154/188 155/188 156/188 157/188 158/188 159/188 160/188 161/188 162/188 163/188 164/188 165/188 166/188 167/188 168/188 169/188 170/188 171/188 172/188 173/188 174/188 175/188 176/188 177/188 178/188 179/188 180/188 181/188 182/188 183/188 184/188 185/188 186/188 187/188 188/188  [collapse]
HUGE STRUCT: SAVING CHUNK 3/4
  [save_struct] 52/188 53/188 54/188 55/188 56/188 57/188 58/188 59/188 60/188 61/188 62/188 63/188 64/188 65/188 66/188 67/188 68/188 69/188 70/188 71/188 72/188 73/188 74/188 75/188 76/188 77/188 78/188 79/188 80/188 81/188 82/188 83/188 84/188 85/188 86/188 87/188 88/188 89/188 90/188 91/188 92/188 93/188 94/188 95/188 96/188 97/188 98/188 99/188 100/188 101/188 102/188 103/188 104/188 105/188 106/188 107/188 108/188 109/188 110/188 111/188 112/188 113/188 114/188 115/188 116/188 117/188 118/188 119/188 120/188 121/188 122/188 123/188 124/188 125/188 126/188 127/188 128/188 129/188 130/188 131/188 132/188 133/188 134/188 135/188 136/188 137/188 138/188 139/188 140/188 141/188 142/188 143/188 144/188 145/188 146/188 147/188 148/188 149/188 150/188 151/188 152/188 153/188 154/188 155/188 156/188 157/188 158/188 159/188 160/188 161/188 162/188 163/188 164/188 165/188 166/188 167/188 168/188 169/188 170/188 171/188 172/188 173/188 174/188 175/188 176/188 177/188 178/188 179/188 180/188 181/188 182/188 183/188 184/188 185/188 186/188 187/188 188/188  [collapse]
HUGE STRUCT: SAVING CHUNK 4/4
  [save_struct] 103/188 104/188 105/188 106/188 107/188 108/188 109/188 110/188 111/188 112/188 113/188 114/188 115/188 116/188 117/188 118/188 119/188 120/188 121/188 122/188 123/188 124/188 125/188 126/188 127/188 128/188 129/188 130/188 131/188 132/188 133/188 134/188 135/188 136/188 137/188 138/188 139/188 140/188 141/188 142/188 143/188 144/188 145/188 146/188 147/188 148/188 149/188 150/188 151/188 152/188 153/188 154/188 155/188 156/188 157/188 158/188 159/188 160/188 161/188 162/188 163/188 164/188 165/188 166/188 167/188 168/188 169/188 170/188 171/188 172/188 173/188 174/188 175/188 176/188 177/188 178/188 179/188 180/188 181/188 182/188 183/188 184/188 185/188 186/188 187/188 188/188  [collapse]
  [save_struct] 84/111 85/111 86/111 87/111 88/111 89/111 90/111 91/111 92/111 93/111 94/111 95/111 96/111 97/111 98/111 99/111 100/111 101/111 102/111 103/111 104/111 105/111 106/111 107/111 108/111 109/111 110/111 111/111  [collapse] [write]
Outputting gene_sample_coverage_table: ./LUSC.per_gene.coverage.txt
  [save_struct] 139/186 140/186 141/186 142/186 143/186 144/186 145/186 146/186 147/186 148/186 149/186 150/186 151/186 152/186 153/186 154/186 155/186 156/186 157/186 158/186 159/186 160/186 161/186 162/186 163/186 164/186 165/186 166/186 167/186 168/186 169/186 170/186 171/186 172/186 173/186 174/186 175/186 176/186 177/186 178/186 179/186 180/186 181/186 182/186 183/186 184/186 185/186 186/186  [collapse] [write]
Outputting gene_sample_mutation_counts_table: ./LUSC.per_gene.mutation_counts.txt
  [save_struct] 164/186 165/186 166/186 167/186 168/186 169/186 170/186 171/186 172/186 173/186 174/186 175/186 176/186 177/186 178/186 179/186 180/186 181/186 182/186 183/186 184/186 185/186 186/186  [collapse] [write]
Mutation breakdown by type

           Frame_Shift_Del: [521]
           Frame_Shift_Ins: [134]
              In_Frame_Del: [84]
              In_Frame_Ins: [19]
         Missense_Mutation: [41821]
         Nonsense_Mutation: [3567]
          Nonstop_Mutation: [55]
                    Silent: [15131]
               Splice_Site: [1152]
    Translation_Start_Site: [23]
                 ----TOTAL: [62507]
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Gather job: collecting partial results

Running MutSig 2:
Gather job: collecting partial results
Outputting significance table: ./LUSC.sig_genes.txt
Done
Mapping 640 genesets from /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt to list of project genes.
100/640 200/640 300/640 400/640 500/640 600/640 
Total of 616 genesets contain at least one project gene.
Finding number of unique sites, unique patients: 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients
Analyzing silent/nonsilent ratios
Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Calculating significance of each gene.
Using projection method.
28	ARENRF2PATHWAY	1.043832e-12
29	ARFPATHWAY	1.332268e-15
35	ATMPATHWAY	6.439294e-15
37	ATRBRCAPATHWAY	1.020711e-06
78	CHEMICALPATHWAY	3.330669e-16
140	G1PATHWAY	3.552714e-15
141	G2PATHWAY	1.221245e-15
447	P53HYPOXIAPATHWAY	0
448	P53PATHWAY	1.110223e-16
468	PLK3PATHWAY	1.110223e-15
469	PMLPATHWAY	1.110223e-15
493	RBPATHWAY	2.442491e-15
503	RNAPATHWAY	2.553513e-15
510	SA_G1_AND_S_PHASES	2.331468e-15
515	SA_REG_CASCADE_OF_CYCLIN_EXPR	5.070824e-05
584	TELPATHWAY	4.329870e-15
587	TERTPATHWAY	5.329071e-15
591	TIDPATHWAY	0
Done
Outputting significance table: ./LUSC.sig_genesets.txt
Done
Mapping 640 genesets from /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt to list of project genes.
100/640 200/640 300/640 400/640 500/640 600/640 
Total of 616 genesets contain at least one project gene.
Finding number of unique sites, unique patients: 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients
Analyzing silent/nonsilent ratios
Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Calculating significance of each gene.
Using projection method.
Done
Outputting significance table: ./LUSC.sig_genesets_2.txt
Done
Loaded COSMIC database from /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
WARNING: unknown chromosome(s):
    {''}

COSMIC analysis:  gene 1000/4520 2000/4520 3000/4520 4000/4520 
Loading refseq database...

Mutation coordinate error (line 22): Length of alternate bases must equal length of refence bases.
247655048	247655049	CC	CC	A
Mutation coordinate error (line 52): Length of alternate bases must equal length of refence bases.
40121557	40121558	GA	GA	T
Mutation coordinate error (line 220): Length of alternate bases must equal length of refence bases.
47308087	47308088	CC	CC	A
Mutation coordinate error (line 417): Length of alternate bases must equal length of refence bases.
19753543	19753544	TC	TC	G
Mutation coordinate error (line 458): Length of alternate bases must equal length of refence bases.
879424	879425	CC	CC	T
Mutation coordinate error (line 471): Length of alternate bases must equal length of refence bases.
16261660	16261661	GG	GG	A
Mutation coordinate error (line 476): Length of alternate bases must equal length of refence bases.
21889736	21889737	GG	GG	A
Mutation coordinate error (line 507): Length of alternate bases must equal length of refence bases.
44422081	44422082	CC	CC	T
Mutation coordinate error (line 509): Length of alternate bases must equal length of refence bases.
45243440	45243441	CC	CC	T
Mutation coordinate error (line 556): Length of alternate bases must equal length of refence bases.
113238187	113238188	GG	GG	A
Mutation coordinate error (line 561): Length of alternate bases must equal length of refence bases.
118483498	118483499	CC	CC	T
Mutation coordinate error (line 608): Length of alternate bases must equal length of refence bases.
159683901	159683902	GG	GG	A
Mutation coordinate error (line 623): Length of alternate bases must equal length of refence bases.
168262467	168262468	CC	CC	T
Mutation coordinate error (line 641): Length of alternate bases must equal length of refence bases.
178820370	178820371	CC	CC	T
Mutation coordinate error (line 655): Length of alternate bases must equal length of refence bases.
192628569	192628570	GG	GG	A
Mutation coordinate error (line 661): Length of alternate bases must equal length of refence bases.
197099062	197099063	GG	GG	A
Mutation coordinate error (line 673): Length of alternate bases must equal length of refence bases.
205068920	205068922	GNT	GNT	A
Mutation coordinate error (line 684): Length of alternate bases must equal length of refence bases.
222742992	222742994	CNC	CNC	T
Mutation coordinate error (line 688): Length of alternate bases must equal length of refence bases.
229676480	229676481	CC	CC	T
Mutation coordinate error (line 699): Length of alternate bases must equal length of refence bases.
240371850	240371851	CC	CC	T
Mutation coordinate error (line 730): Length of alternate bases must equal length of refence bases.
20403882	20403883	GG	GG	A
Mutation coordinate error (line 747): Length of alternate bases must equal length of refence bases.
37450511	37450512	GG	GG	A
Mutation coordinate error (line 777): Length of alternate bases must equal length of refence bases.
74688726	74688727	GG	GG	A
Mutation coordinate error (line 787): Length of alternate bases must equal length of refence bases.
86459855	86459856	CC	CC	T
Mutation coordinate error (line 815): Length of alternate bases must equal length of refence bases.
121712845	121712846	GG	GG	A
Mutation coordinate error (line 823): Length of alternate bases must equal length of refence bases.
135075138	135075139	CC	CC	T
Mutation coordinate error (line 854): Length of alternate bases must equal length of refence bases.
170136994	170136995	CC	CC	T
Mutation coordinate error (line 857): Length of alternate bases must equal length of refence bases.
171974367	171974368	CC	CC	T
Mutation coordinate error (line 884): Length of alternate bases must equal length of refence bases.
188247996	188247997	CC	CC	T
Mutation coordinate error (line 888): Length of alternate bases must equal length of refence bases.
192011344	192011345	GG	GG	A
Mutation coordinate error (line 889): Length of alternate bases must equal length of refence bases.
202519625	202519626	CC	CC	T
Mutation coordinate error (line 891): Length of alternate bases must equal length of refence bases.
206480410	206480411	CC	CC	T
Mutation coordinate error (line 899): Length of alternate bases must equal length of refence bases.
219894862	219894863	GG	GG	A
Mutation coordinate error (line 902): Length of alternate bases must equal length of refence bases.
220432668	220432669	GG	GG	T
Mutation coordinate error (line 930): Length of alternate bases must equal length of refence bases.
12611664	12611665	CC	CC	T
Mutation coordinate error (line 938): Length of alternate bases must equal length of refence bases.
30827866	30827867	CC	CC	T
Mutation coordinate error (line 941): Length of alternate bases must equal length of refence bases.
38539252	38539253	CC	CC	T
Mutation coordinate error (line 945): Length of alternate bases must equal length of refence bases.
40433626	40433627	CC	CC	T
Mutation coordinate error (line 946): Length of alternate bases must equal length of refence bases.
41275037	41275038	CC	CC	T
Mutation coordinate error (line 947): Length of alternate bases must equal length of refence bases.
46568959	46568960	CC	CC	G
Mutation coordinate error (line 961): Length of alternate bases must equal length of refence bases.
64599030	64599031	GG	GG	A
Mutation coordinate error (line 980): Length of alternate bases must equal length of refence bases.
120134863	120134864	CC	CC	T
Mutation coordinate error (line 993): Length of alternate bases must equal length of refence bases.
142272709	142272711	GNG	GNG	A
Mutation coordinate error (line 1030): Length of alternate bases must equal length of refence bases.
3188395	3188396	CC	CC	T
Mutation coordinate error (line 1087): Length of alternate bases must equal length of refence bases.
84374945	84374946	CC	CC	T
Mutation coordinate error (line 1109): Length of alternate bases must equal length of refence bases.
122591138	122591139	GG	GG	A
Mutation coordinate error (line 1115): Length of alternate bases must equal length of refence bases.
128854224	128854225	GG	GG	A
Mutation coordinate error (line 1132): Length of alternate bases must equal length of refence bases.
160277247	160277248	CC	CC	T
Mutation coordinate error (line 1195): Length of alternate bases must equal length of refence bases.
79616862	79616863	AG	AG	T
Mutation coordinate error (line 1202): Length of alternate bases must equal length of refence bases.
110096975	110096976	GG	GG	A
Mutation coordinate error (line 1212): Length of alternate bases must equal length of refence bases.
121187993	121187994	CC	CC	T
Mutation coordinate error (line 1222): Length of alternate bases must equal length of refence bases.
139946784	139946785	CC	CC	T
Mutation coordinate error (line 1278): Length of alternate bases must equal length of refence bases.
153796373	153796374	GG	GG	A
Mutation coordinate error (line 1303): Length of alternate bases must equal length of refence bases.
10529189	10529190	CT	CT	T
Mutation coordinate error (line 1304): Length of alternate bases must equal length of refence bases.
12164203	12164204	CC	CC	T
Mutation coordinate error (line 1310): Length of alternate bases must equal length of refence bases.
29407862	29407863	GG	GG	A
Mutation coordinate error (line 1314): Length of alternate bases must equal length of refence bases.
31631763	31631764	GG	GG	A
Mutation coordinate error (line 1317): Length of alternate bases must equal length of refence bases.
31760835	31760836	GG	GG	A
Mutation coordinate error (line 1336): Length of alternate bases must equal length of refence bases.
43316338	43316339	CC	CC	T
Mutation coordinate error (line 1349): Length of alternate bases must equal length of refence bases.
56917868	56917869	CC	CC	T
Mutation coordinate error (line 1356): Length of alternate bases must equal length of refence bases.
70639419	70639420	CC	CC	T
Mutation coordinate error (line 1378): Length of alternate bases must equal length of refence bases.
108041962	108041963	CC	CC	T
Mutation coordinate error (line 1386): Length of alternate bases must equal length of refence bases.
117232185	117232186	GG	GG	A
Mutation coordinate error (line 1409): Length of alternate bases must equal length of refence bases.
151669885	151669886	CC	CC	T
Mutation coordinate error (line 1411): Length of alternate bases must equal length of refence bases.
152415611	152415612	CC	CC	T
Mutation coordinate error (line 1431): Length of alternate bases must equal length of refence bases.
168464355	168464356	CC	CC	T
Mutation coordinate error (line 1440): Length of alternate bases must equal length of refence bases.
2977615	2977616	CC	CC	T
Mutation coordinate error (line 1468): Length of alternate bases must equal length of refence bases.
48313813	48313814	CC	CC	T
Mutation coordinate error (line 1477): Length of alternate bases must equal length of refence bases.
73973190	73973191	GG	GG	A
Mutation coordinate error (line 1481): Length of alternate bases must equal length of refence bases.
76132846	76132847	CC	CC	T
Mutation coordinate error (line 1487): Length of alternate bases must equal length of refence bases.
82581358	82581359	CC	CC	T
Mutation coordinate error (line 1505): Length of alternate bases must equal length of refence bases.
94293051	94293052	CC	CC	T
Mutation coordinate error (line 1511): Length of alternate bases must equal length of refence bases.
99026789	99026790	GG	GG	A
Mutation coordinate error (line 1512): Length of alternate bases must equal length of refence bases.
100028584	100028585	CC	CC	T
Mutation coordinate error (line 1559): Length of alternate bases must equal length of refence bases.
151860306	151860307	GG	GG	A
Mutation coordinate error (line 1586): Length of alternate bases must equal length of refence bases.
30695230	30695231	CC	CC	T
Mutation coordinate error (line 1591): Length of alternate bases must equal length of refence bases.
39496021	39496022	CC	CC	T
Mutation coordinate error (line 1630): Length of alternate bases must equal length of refence bases.
105360851	105360852	CC	CC	T
Mutation coordinate error (line 1663): Length of alternate bases must equal length of refence bases.
144773320	144773321	CC	CC	T
Mutation coordinate error (line 1705): Length of alternate bases must equal length of refence bases.
123624866	123624867	CC	CC	A
Mutation coordinate error (line 1709): Length of alternate bases must equal length of refence bases.
125585315	125585316	GG	GG	A
Mutation coordinate error (line 1723): Length of alternate bases must equal length of refence bases.
5435743	5435744	CC	CC	T
Mutation coordinate error (line 1728): Length of alternate bases must equal length of refence bases.
13323110	13323111	CC	CC	T
Mutation coordinate error (line 1741): Length of alternate bases must equal length of refence bases.
25887663	25887664	GG	GG	A
Mutation coordinate error (line 1747): Length of alternate bases must equal length of refence bases.
30317559	30317560	CC	CC	T
Mutation coordinate error (line 1767): Length of alternate bases must equal length of refence bases.
64573279	64573280	CC	CC	T
Mutation coordinate error (line 1790): Length of alternate bases must equal length of refence bases.
96084289	96084290	GG	GG	A
Mutation coordinate error (line 1810): Length of alternate bases must equal length of refence bases.
115947891	115947893	GNA	GNA	A
Mutation coordinate error (line 1820): Length of alternate bases must equal length of refence bases.
133107540	133107541	GG	GG	T
Mutation coordinate error (line 1824): Length of alternate bases must equal length of refence bases.
688419	688420	GG	GG	A
Mutation coordinate error (line 1830): Length of alternate bases must equal length of refence bases.
1606160	1606161	CC	CC	T
Mutation coordinate error (line 1858): Length of alternate bases must equal length of refence bases.
47306552	47306553	CC	CC	T
Mutation coordinate error (line 1903): Length of alternate bases must equal length of refence bases.
65421986	65421987	CC	CC	T
Mutation coordinate error (line 1944): Length of alternate bases must equal length of refence bases.
119996472	119996473	GC	GC	A
Mutation coordinate error (line 1975): Length of alternate bases must equal length of refence bases.
7048042	7048043	CC	CC	T
Mutation coordinate error (line 2017): Length of alternate bases must equal length of refence bases.
50191039	50191040	GG	GG	A
Mutation coordinate error (line 2020): Length of alternate bases must equal length of refence bases.
52713029	52713030	CC	CC	T
Mutation coordinate error (line 2038): Length of alternate bases must equal length of refence bases.
56755840	56755841	GG	GG	A
Mutation coordinate error (line 2049): Length of alternate bases must equal length of refence bases.
64814175	64814176	AC	AC	T
Mutation coordinate error (line 2059): Length of alternate bases must equal length of refence bases.
72070878	72070879	CC	CC	T
Mutation coordinate error (line 2082): Length of alternate bases must equal length of refence bases.
117448145	117448146	GG	GG	T
Mutation coordinate error (line 2088): Length of alternate bases must equal length of refence bases.
121154450	121154451	GG	GG	A
Mutation coordinate error (line 2097): Length of alternate bases must equal length of refence bases.
124497275	124497277	GNG	GNG	A
Mutation coordinate error (line 2106): Length of alternate bases must equal length of refence bases.
21362645	21362646	GG	GG	A
Mutation coordinate error (line 2111): Length of alternate bases must equal length of refence bases.
25671266	25671267	CC	CC	T
Mutation coordinate error (line 2114): Length of alternate bases must equal length of refence bases.
32818196	32818197	CC	CC	T
Mutation coordinate error (line 2116): Length of alternate bases must equal length of refence bases.
36158054	36158055	CC	CC	T
Mutation coordinate error (line 2123): Length of alternate bases must equal length of refence bases.
46638865	46638866	CC	CC	T
Mutation coordinate error (line 2131): Length of alternate bases must equal length of refence bases.
61041372	61041373	CC	CC	T
Mutation coordinate error (line 2164): Length of alternate bases must equal length of refence bases.
35228004	35228005	CC	CC	T
Mutation coordinate error (line 2190): Length of alternate bases must equal length of refence bases.
68221818	68221819	CC	CC	T
Mutation coordinate error (line 2214): Length of alternate bases must equal length of refence bases.
105405869	105405870	GG	GG	A
Mutation coordinate error (line 2229): Length of alternate bases must equal length of refence bases.
33261033	33261034	GG	GG	A
Mutation coordinate error (line 2240): Length of alternate bases must equal length of refence bases.
41102149	41102150	CC	CC	T
Mutation coordinate error (line 2242): Length of alternate bases must equal length of refence bases.
42107463	42107464	CC	CC	T
Mutation coordinate error (line 2266): Length of alternate bases must equal length of refence bases.
62255038	62255039	GG	GG	A
Mutation coordinate error (line 2281): Length of alternate bases must equal length of refence bases.
74426484	74426485	CC	CC	T
Mutation coordinate error (line 2286): Length of alternate bases must equal length of refence bases.
77025689	77025690	GG	GG	A
Mutation coordinate error (line 2292): Length of alternate bases must equal length of refence bases.
85476451	85476452	CC	CC	T
Mutation coordinate error (line 2298): Length of alternate bases must equal length of refence bases.
90188364	90188365	GG	GG	A
Mutation coordinate error (line 2300): Length of alternate bases must equal length of refence bases.
91447563	91447564	CC	CC	T
Mutation coordinate error (line 2305): Length of alternate bases must equal length of refence bases.
99672261	99672262	GG	GG	A
Mutation coordinate error (line 2308): Length of alternate bases must equal length of refence bases.
100821497	100821498	GG	GG	A
Mutation coordinate error (line 2309): Length of alternate bases must equal length of refence bases.
101872087	101872088	CC	CC	T
Mutation coordinate error (line 2316): Length of alternate bases must equal length of refence bases.
3140621	3140622	CC	CC	T
Mutation coordinate error (line 2326): Length of alternate bases must equal length of refence bases.
10788716	10788717	CC	CC	T
Mutation coordinate error (line 2329): Length of alternate bases must equal length of refence bases.
18810056	18810057	GG	GG	A
Mutation coordinate error (line 2345): Length of alternate bases must equal length of refence bases.
29998422	29998423	CC	CC	T
Mutation coordinate error (line 2352): Length of alternate bases must equal length of refence bases.
31072431	31072432	GG	GG	A
Mutation coordinate error (line 2358): Length of alternate bases must equal length of refence bases.
49670785	49670786	GG	GG	A
Mutation coordinate error (line 2382): Length of alternate bases must equal length of refence bases.
70891610	70891611	AT	AT	T
Mutation coordinate error (line 2401): Length of alternate bases must equal length of refence bases.
89294367	89294368	GG	GG	A
Mutation coordinate error (line 2409): Length of alternate bases must equal length of refence bases.
4722448	4722449	CC	CC	T
Mutation coordinate error (line 2412): Length of alternate bases must equal length of refence bases.
4906956	4906957	CC	CC	T
Mutation coordinate error (line 2429): Length of alternate bases must equal length of refence bases.
10447437	10447438	CT	CT	T
Mutation coordinate error (line 2440): Length of alternate bases must equal length of refence bases.
21217475	21217476	CC	CC	T
Mutation coordinate error (line 2441): Length of alternate bases must equal length of refence bases.
26731817	26731818	CC	CC	T
Mutation coordinate error (line 2443): Length of alternate bases must equal length of refence bases.
27822697	27822698	CC	CC	T
Mutation coordinate error (line 2478): Length of alternate bases must equal length of refence bases.
60753195	60753196	CC	CC	T
Mutation coordinate error (line 2492): Length of alternate bases must equal length of refence bases.
76547628	76547629	GG	GG	A
Mutation coordinate error (line 2494): Length of alternate bases must equal length of refence bases.
76565307	76565308	GG	GG	A
Mutation coordinate error (line 2515): Length of alternate bases must equal length of refence bases.
19780731	19780732	CC	CC	T
Mutation coordinate error (line 2516): Length of alternate bases must equal length of refence bases.
22023101	22023102	GG	GG	A
Mutation coordinate error (line 2521): Length of alternate bases must equal length of refence bases.
29178598	29178599	CC	CC	T
Mutation coordinate error (line 2527): Length of alternate bases must equal length of refence bases.
40854007	40854008	CC	CC	T
Mutation coordinate error (line 2548): Length of alternate bases must equal length of refence bases.
4219746	4219747	GG	GG	A
Mutation coordinate error (line 2552): Length of alternate bases must equal length of refence bases.
6495841	6495842	CC	CC	T
Mutation coordinate error (line 2553): Length of alternate bases must equal length of refence bases.
7267448	7267449	GG	GG	A
Mutation coordinate error (line 2580): Length of alternate bases must equal length of refence bases.
11094861	11094862	CC	CC	T
Mutation coordinate error (line 2597): Length of alternate bases must equal length of refence bases.
15132449	15132450	GG	GG	A
Mutation coordinate error (line 2605): Length of alternate bases must equal length of refence bases.
17945968	17945969	CC	CC	T
Mutation coordinate error (line 2608): Length of alternate bases must equal length of refence bases.
18899070	18899071	CC	CC	T
Mutation coordinate error (line 2615): Length of alternate bases must equal length of refence bases.
31768865	31768866	CC	CC	T
Mutation coordinate error (line 2622): Length of alternate bases must equal length of refence bases.
36051371	36051372	GG	GG	A
Mutation coordinate error (line 2629): Length of alternate bases must equal length of refence bases.
39196706	39196707	CC	CC	T
Mutation coordinate error (line 2634): Length of alternate bases must equal length of refence bases.
40828027	40828028	GG	GG	A
Mutation coordinate error (line 2640): Length of alternate bases must equal length of refence bases.
42729860	42729861	CC	CC	T
Mutation coordinate error (line 2647): Length of alternate bases must equal length of refence bases.
46021010	46021011	CC	CC	T
Mutation coordinate error (line 2660): Length of alternate bases must equal length of refence bases.
49631724	49631725	GG	GG	A
Mutation coordinate error (line 2661): Length of alternate bases must equal length of refence bases.
49913125	49913126	GG	GG	A
Mutation coordinate error (line 2668): Length of alternate bases must equal length of refence bases.
52003495	52003496	CC	CC	T
Mutation coordinate error (line 2681): Length of alternate bases must equal length of refence bases.
54760446	54760447	GG	GG	A
Mutation coordinate error (line 2691): Length of alternate bases must equal length of refence bases.
55451163	55451164	GG	GG	A
Mutation coordinate error (line 2699): Length of alternate bases must equal length of refence bases.
56701471	56701472	GG	GG	A
Mutation coordinate error (line 2711): Length of alternate bases must equal length of refence bases.
1115883	1115884	CC	CC	T
Mutation coordinate error (line 2720): Length of alternate bases must equal length of refence bases.
5990442	5990443	CC	CC	T
Mutation coordinate error (line 2722): Length of alternate bases must equal length of refence bases.
8862318	8862319	CC	CC	T
Mutation coordinate error (line 2724): Length of alternate bases must equal length of refence bases.
18123429	18123430	CC	CC	T
Mutation coordinate error (line 2732): Length of alternate bases must equal length of refence bases.
25198193	25198194	GG	GG	A
Mutation coordinate error (line 2736): Length of alternate bases must equal length of refence bases.
30584351	30584352	GG	GG	A
Mutation coordinate error (line 2738): Length of alternate bases must equal length of refence bases.
31023865	31023866	CC	CC	T
Mutation coordinate error (line 2757): Length of alternate bases must equal length of refence bases.
48497523	48497524	CC	CC	T
Mutation coordinate error (line 2758): Length of alternate bases must equal length of refence bases.
50406824	50406825	GG	GG	A
Mutation coordinate error (line 2762): Length of alternate bases must equal length of refence bases.
61430920	61430921	CC	CC	T
Mutation coordinate error (line 2783): Length of alternate bases must equal length of refence bases.
35468224	35468225	CC	CC	T
Mutation coordinate error (line 2788): Length of alternate bases must equal length of refence bases.
41710112	41710113	CC	CC	T
Mutation coordinate error (line 2789): Length of alternate bases must equal length of refence bases.
43496237	43496238	GG	GG	A
Mutation coordinate error (line 2801): Length of alternate bases must equal length of refence bases.
21385699	21385700	GG	GG	A
Mutation coordinate error (line 2818): Length of alternate bases must equal length of refence bases.
30795663	30795664	CC	CC	T
Mutation coordinate error (line 2831): Length of alternate bases must equal length of refence bases.
39966849	39966850	CC	CC	T
Mutation coordinate error (line 2844): Length of alternate bases must equal length of refence bases.
50956661	50956662	CC	CC	T
Mutation coordinate error (line 2846): Length of alternate bases must equal length of refence bases.
215781	215782	GG	GG	A
Mutation coordinate error (line 2853): Length of alternate bases must equal length of refence bases.
31893359	31893360	CC	CC	T
Mutation coordinate error (line 2887): Length of alternate bases must equal length of refence bases.
135741253	135741254	GG	GG	A
Mutation coordinate error (line 2936): Length of alternate bases must equal length of refence bases.
98375392	98375393	CC	CC	A
Mutation coordinate error (line 2941): Length of alternate bases must equal length of refence bases.
209027951	209027952	GG	GG	T
Mutation coordinate error (line 2994): Length of alternate bases must equal length of refence bases.
82882108	82882109	CC	CC	A
Mutation coordinate error (line 3126): Length of alternate bases must equal length of refence bases.
30975749	30975750	CC	CC	T
Mutation coordinate error (line 3158): Length of alternate bases must equal length of refence bases.
154098875	154098876	CC	CC	A
Mutation coordinate error (line 3315): Length of alternate bases must equal length of refence bases.
56128066	56128067	TG	TG	G
Mutation coordinate error (line 3359): Length of alternate bases must equal length of refence bases.
42356638	42356639	TG	TG	C
Mutation coordinate error (line 3419): Length of alternate bases must equal length of refence bases.
19338799	19338800	GG	GG	C
Mutation coordinate error (line 3658): Length of alternate bases must equal length of refence bases.
248112725	248112726	TG	TG	A
Mutation coordinate error (line 3685): Length of alternate bases must equal length of refence bases.
166870332	166870333	CC	CC	A
Mutation coordinate error (line 3777): Length of alternate bases must equal length of refence bases.
113240998	113240999	GA	GA	A
Mutation coordinate error (line 3798): Length of alternate bases must equal length of refence bases.
38407328	38407329	GG	GG	A
Mutation coordinate error (line 3896): Length of alternate bases must equal length of refence bases.
47844500	47844501	GT	GT	A
Mutation coordinate error (line 3908): Length of alternate bases must equal length of refence bases.
31825574	31825575	CC	CC	A
Mutation coordinate error (line 3953): Length of alternate bases must equal length of refence bases.
235331905	235331906	AC	AC	G
Mutation coordinate error (line 4072): Length of alternate bases must equal length of refence bases.
7577092	7577093	CC	CC	G
Mutation coordinate error (line 4490): Length of alternate bases must equal length of refence bases.
54344035	54344036	CC	CC	A
Mutation coordinate error (line 4536): Length of alternate bases must equal length of refence bases.
182775210	182775211	CC	CC	A
Mutation coordinate error (line 4583): Length of alternate bases must equal length of refence bases.
926205	926206	GC	GC	A
Mutation coordinate error (line 4619): Length of alternate bases must equal length of refence bases.
123367532	123367533	CC	CC	T
Mutation coordinate error (line 4624): Length of alternate bases must equal length of refence bases.
50723928	50723929	GC	GC	T
Mutation coordinate error (line 4681): Length of alternate bases must equal length of refence bases.
72020962	72020963	GG	GG	T
Mutation coordinate error (line 4732): Length of alternate bases must equal length of refence bases.
47704633	47704634	CC	CC	A
Mutation coordinate error (line 4760): Length of alternate bases must equal length of refence bases.
79403931	79403932	GT	GT	A
Mutation coordinate error (line 5004): Length of alternate bases must equal length of refence bases.
7577505	7577506	TC	TC	A
Mutation coordinate error (line 5006): Length of alternate bases must equal length of refence bases.
40332908	40332909	GC	GC	T
Mutation coordinate error (line 5051): Length of alternate bases must equal length of refence bases.
56733549	56733550	TG	TG	C
Mutation coordinate error (line 5202): Length of alternate bases must equal length of refence bases.
38854588	38854589	CA	CA	A
Mutation coordinate error (line 5278): Length of alternate bases must equal length of refence bases.
17415307	17415308	CT	CT	A
Mutation coordinate error (line 5425): Length of alternate bases must equal length of refence bases.
91456402	91456403	CC	CC	A
Mutation coordinate error (line 5462): Length of alternate bases must equal length of refence bases.
241146429	241146430	CC	CC	A
Mutation coordinate error (line 5473): Length of alternate bases must equal length of refence bases.
79314031	79314032	AG	AG	T
Mutation coordinate error (line 5590): Length of alternate bases must equal length of refence bases.
93097425	93097426	CC	CC	A
Mutation coordinate error (line 5687): Length of alternate bases must equal length of refence bases.
30409369	30409370	GC	GC	C
Mutation coordinate error (line 5689): Length of alternate bases must equal length of refence bases.
32302479	32302480	CC	CC	A
Mutation coordinate error (line 5690): Length of alternate bases must equal length of refence bases.
41385101	41385102	CC	CC	A
Mutation coordinate error (line 5702): Length of alternate bases must equal length of refence bases.
41495833	41495834	TT	TT	A
Mutation coordinate error (line 5741): Length of alternate bases must equal length of refence bases.
108682279	108682280	CA	CA	T
Mutation coordinate error (line 5819): Length of alternate bases must equal length of refence bases.
42678366	42678367	GG	GG	T
Mutation coordinate error (line 5821): Length of alternate bases must equal length of refence bases.
44888526	44888527	GG	GG	T
Mutation coordinate error (line 5829): Length of alternate bases must equal length of refence bases.
56704808	56704809	AG	AG	T
Mutation coordinate error (line 5867): Length of alternate bases must equal length of refence bases.
1664699	1664700	CC	CC	A
Mutation coordinate error (line 5882): Length of alternate bases must equal length of refence bases.
74419134	74419135	CC	CC	A
Mutation coordinate error (line 5959): Length of alternate bases must equal length of refence bases.
86374017	86374018	GG	GG	T
Mutation coordinate error (line 5984): Length of alternate bases must equal length of refence bases.
5428437	5428438	CT	CT	T
Mutation coordinate error (line 6131): Length of alternate bases must equal length of refence bases.
56237098	56237099	GT	GT	T
Mutation coordinate error (line 6137): Length of alternate bases must equal length of refence bases.
106810465	106810466	GG	GG	T
Mutation coordinate error (line 6190): Length of alternate bases must equal length of refence bases.
7830087	7830088	CG	CG	T
Mutation coordinate error (line 6204): Length of alternate bases must equal length of refence bases.
37130357	37130358	CC	CC	T
Mutation coordinate error (line 6209): Length of alternate bases must equal length of refence bases.
46825125	46825126	GA	GA	T
Mutation coordinate error (line 6287): Length of alternate bases must equal length of refence bases.
102175056	102175057	TC	TC	A
Mutation coordinate error (line 6332): Length of alternate bases must equal length of refence bases.
150923419	150923420	CT	CT	A
Mutation coordinate error (line 6336): Length of alternate bases must equal length of refence bases.
59410984	59410985	AG	AG	G
Mutation coordinate error (line 6340): Length of alternate bases must equal length of refence bases.
101146458	101146459	TC	TC	A
Mutation coordinate error (line 6348): Length of alternate bases must equal length of refence bases.
27389215	27389216	CC	CC	G
Mutation coordinate error (line 6357): Length of alternate bases must equal length of refence bases.
56954921	56954922	CT	CT	A
Mutation coordinate error (line 6383): Length of alternate bases must equal length of refence bases.
64494261	64494262	GA	GA	A
Mutation coordinate error (line 6419): Length of alternate bases must equal length of refence bases.
35504575	35504576	AG	AG	G
Mutation coordinate error (line 6423): Length of alternate bases must equal length of refence bases.
57672161	57672162	CA	CA	A
Mutation coordinate error (line 6425): Length of alternate bases must equal length of refence bases.
33337252	33337253	TC	TC	A
Mutation coordinate error (line 6509): Length of alternate bases must equal length of refence bases.
124999829	124999830	GG	GG	T
Mutation coordinate error (line 6542): Length of alternate bases must equal length of refence bases.
113652396	113652397	GG	GG	T
Mutation coordinate error (line 6564): Length of alternate bases must equal length of refence bases.
113353197	113353198	TC	TC	A
Mutation coordinate error (line 6619): Length of alternate bases must equal length of refence bases.
31848707	31848708	CC	CC	A
Mutation coordinate error (line 6730): Length of alternate bases must equal length of refence bases.
120637225	120637226	TC	TC	A
Mutation coordinate error (line 6750): Length of alternate bases must equal length of refence bases.
47120628	47120629	GG	GG	T
Mutation coordinate error (line 6779): Length of alternate bases must equal length of refence bases.
15968834	15968835	TC	TC	C
Mutation coordinate error (line 6783): Length of alternate bases must equal length of refence bases.
3582091	3582092	GG	GG	T
Mutation coordinate error (line 6787): Length of alternate bases must equal length of refence bases.
422160	422161	CC	CC	A
Mutation coordinate error (line 6801): Length of alternate bases must equal length of refence bases.
45489736	45489737	GG	GG	T
Mutation coordinate error (line 6836): Length of alternate bases must equal length of refence bases.
53574688	53574689	CG	CG	A
Mutation coordinate error (line 6887): Length of alternate bases must equal length of refence bases.
237060905	237060906	GA	GA	T
Mutation coordinate error (line 6983): Length of alternate bases must equal length of refence bases.
88589318	88589319	CG	CG	A
Mutation coordinate error (line 6997): Length of alternate bases must equal length of refence bases.
1810516	1810517	GG	GG	T
Mutation coordinate error (line 7096): Length of alternate bases must equal length of refence bases.
108568085	108568086	CC	CC	A
Mutation coordinate error (line 7136): Length of alternate bases must equal length of refence bases.
135271188	135271189	CC	CC	A
Mutation coordinate error (line 7188): Length of alternate bases must equal length of refence bases.
118354352	118354353	GG	GG	T
Mutation coordinate error (line 7196): Length of alternate bases must equal length of refence bases.
132082018	132082019	CT	CT	T
Mutation coordinate error (line 7223): Length of alternate bases must equal length of refence bases.
50545843	50545844	GG	GG	T
Mutation coordinate error (line 7366): Length of alternate bases must equal length of refence bases.
111498481	111498482	GC	GC	A
Mutation coordinate error (line 7404): Length of alternate bases must equal length of refence bases.
55579674	55579675	CC	CC	A
Mutation coordinate error (line 7405): Length of alternate bases must equal length of refence bases.
59610591	59610592	GG	GG	T
Mutation coordinate error (line 7557): Length of alternate bases must equal length of refence bases.
144886204	144886205	CC	CC	A
Mutation coordinate error (line 7744): Length of alternate bases must equal length of refence bases.
158226602	158226603	GG	GG	A
Mutation coordinate error (line 7754): Length of alternate bases must equal length of refence bases.
241031964	241031965	CC	CC	A
Mutation coordinate error (line 7826): Length of alternate bases must equal length of refence bases.
140562948	140562949	GG	GG	T
Mutation coordinate error (line 7902): Length of alternate bases must equal length of refence bases.
103029734	103029735	TC	TC	A
Mutation coordinate error (line 7912): Length of alternate bases must equal length of refence bases.
15131001	15131002	CC	CC	A
Mutation coordinate error (line 8012): Length of alternate bases must equal length of refence bases.
47531447	47531448	GG	GG	C
Mutation coordinate error (line 8026): Length of alternate bases must equal length of refence bases.
17750265	17750266	CC	CC	A
Mutation coordinate error (line 8058): Length of alternate bases must equal length of refence bases.
19062345	19062346	GG	GG	T
Mutation coordinate error (line 8165): Length of alternate bases must equal length of refence bases.
139912284	139912285	CA	CA	A
Mutation coordinate error (line 8186): Length of alternate bases must equal length of refence bases.
20248835	20248836	GG	GG	A
Mutation coordinate error (line 8195): Length of alternate bases must equal length of refence bases.
89973675	89973676	GG	GG	T
Mutation coordinate error (line 8206): Length of alternate bases must equal length of refence bases.
28993227	28993228	CC	CC	A
Mutation coordinate error (line 8223): Length of alternate bases must equal length of refence bases.
18822079	18822080	GG	GG	T
Mutation coordinate error (line 8237): Length of alternate bases must equal length of refence bases.
107454957	107454958	TG	TG	C
Mutation coordinate error (line 8245): Length of alternate bases must equal length of refence bases.
138886687	138886688	GG	GG	T
Mutation coordinate error (line 8345): Length of alternate bases must equal length of refence bases.
33576326	33576327	GG	GG	T
Mutation coordinate error (line 8349): Length of alternate bases must equal length of refence bases.
66461843	66461844	GG	GG	A
Mutation coordinate error (line 8430): Length of alternate bases must equal length of refence bases.
56043836	56043837	AG	AG	C
Mutation coordinate error (line 8471): Length of alternate bases must equal length of refence bases.
49794875	49794876	CG	CG	A
Mutation coordinate error (line 8498): Length of alternate bases must equal length of refence bases.
48117870	48117871	GG	GG	T
Mutation coordinate error (line 8511): Length of alternate bases must equal length of refence bases.
10555833	10555834	CT	CT	T
Mutation coordinate error (line 8652): Length of alternate bases must equal length of refence bases.
184689483	184689484	GG	GG	T
Mutation coordinate error (line 8669): Length of alternate bases must equal length of refence bases.
159076762	159076763	CC	CC	A
Mutation coordinate error (line 8755): Length of alternate bases must equal length of refence bases.
33103303	33103304	GA	GA	A
Mutation coordinate error (line 8958): Length of alternate bases must equal length of refence bases.
11189016	11189017	GC	GC	C
Mutation coordinate error (line 9084): Length of alternate bases must equal length of refence bases.
57472406	57472407	CA	CA	A
Mutation coordinate error (line 9139): Length of alternate bases must equal length of refence bases.
21028260	21028261	CA	CA	A
Mutation coordinate error (line 9181): Length of alternate bases must equal length of refence bases.
5416197	5416198	TC	TC	A
Mutation coordinate error (line 9381): Length of alternate bases must equal length of refence bases.
16694657	16694658	CG	CG	A
Mutation coordinate error (line 9382): Length of alternate bases must equal length of refence bases.
24593368	24593369	CC	CC	A
Mutation coordinate error (line 9523): Length of alternate bases must equal length of refence bases.
47633845	47633846	GG	GG	A
Mutation coordinate error (line 9536): Length of alternate bases must equal length of refence bases.
68058546	68058547	CC	CC	A
Mutation coordinate error (line 9542): Length of alternate bases must equal length of refence bases.
107814652	107814653	GG	GG	T
Mutation coordinate error (line 9598): Length of alternate bases must equal length of refence bases.
125261909	125261910	CC	CC	A
Mutation coordinate error (line 9622): Length of alternate bases must equal length of refence bases.
108072579	108072580	GG	GG	T
Mutation coordinate error (line 9642): Length of alternate bases must equal length of refence bases.
5141673	5141674	GG	GG	C
Mutation coordinate error (line 9688): Length of alternate bases must equal length of refence bases.
119915061	119915062	CC	CC	A
Mutation coordinate error (line 9711): Length of alternate bases must equal length of refence bases.
96602727	96602728	CC	CC	A
Mutation coordinate error (line 9720): Length of alternate bases must equal length of refence bases.
5345100	5345101	CC	CC	A
Mutation coordinate error (line 9775): Length of alternate bases must equal length of refence bases.
41865899	41865900	GG	GG	T
Mutation coordinate error (line 9861): Length of alternate bases must equal length of refence bases.
237774248	237774249	CC	CC	A
Mutation coordinate error (line 10002): Length of alternate bases must equal length of refence bases.
58040566	58040567	GC	GC	T
Mutation coordinate error (line 10008): Length of alternate bases must equal length of refence bases.
31523135	31523136	GG	GG	T
Mutation coordinate error (line 10017): Length of alternate bases must equal length of refence bases.
17476431	17476432	GG	GG	A
Mutation coordinate error (line 10022): Length of alternate bases must equal length of refence bases.
37210539	37210540	GG	GG	T
Mutation coordinate error (line 10145): Length of alternate bases must equal length of refence bases.
48535522	48535523	GG	GG	C
Mutation coordinate error (line 10220): Length of alternate bases must equal length of refence bases.
41303990	41303991	CC	CC	A
Mutation coordinate error (line 10263): Length of alternate bases must equal length of refence bases.
122003471	122003473	CNG	CNG	T
Mutation coordinate error (line 10310): Length of alternate bases must equal length of refence bases.
73100434	73100435	GG	GG	T
Mutation coordinate error (line 10351): Length of alternate bases must equal length of refence bases.
30918610	30918611	GG	GG	C
Mutation coordinate error (line 10375): Length of alternate bases must equal length of refence bases.
92600220	92600221	TG	TG	C
Mutation coordinate error (line 10402): Length of alternate bases must equal length of refence bases.
21623614	21623615	CC	CC	A
Mutation coordinate error (line 10447): Length of alternate bases must equal length of refence bases.
36352134	36352135	GG	GG	T
Mutation coordinate error (line 10465): Length of alternate bases must equal length of refence bases.
22782636	22782637	GG	GG	T
Mutation coordinate error (line 10523): Length of alternate bases must equal length of refence bases.
197030958	197030959	AG	AG	T
Mutation coordinate error (line 10561): Length of alternate bases must equal length of refence bases.
225729367	225729368	TG	TG	A
Mutation coordinate error (line 10640): Length of alternate bases must equal length of refence bases.
28196728	28196729	CG	CG	G
Mutation coordinate error (line 10689): Length of alternate bases must equal length of refence bases.
55419153	55419154	CC	CC	A
Mutation coordinate error (line 10724): Length of alternate bases must equal length of refence bases.
101201173	101201174	CT	CT	A
Mutation coordinate error (line 10792): Length of alternate bases must equal length of refence bases.
73962784	73962785	GG	GG	C
Mutation coordinate error (line 10962): Length of alternate bases must equal length of refence bases.
48891648	48891649	CC	CC	A
Mutation coordinate error (line 10969): Length of alternate bases must equal length of refence bases.
74742797	74742798	GG	GG	T
Mutation coordinate error (line 10970): Length of alternate bases must equal length of refence bases.
89177357	89177358	TT	TT	A
Mutation coordinate error (line 11119): Length of alternate bases must equal length of refence bases.
60164080	60164081	CA	CA	A
Mutation coordinate error (line 11174): Length of alternate bases must equal length of refence bases.
67145042	67145043	GC	GC	T
Mutation coordinate error (line 11452): Length of alternate bases must equal length of refence bases.
13306671	13306672	CC	CC	G
Mutation coordinate error (line 11558): Length of alternate bases must equal length of refence bases.
55582895	55582896	CC	CC	A
Mutation coordinate error (line 11596): Length of alternate bases must equal length of refence bases.
123813951	123813952	CC	CC	A
Mutation coordinate error (line 11688): Length of alternate bases must equal length of refence bases.
50759418	50759419	CC	CC	A
Mutation coordinate error (line 11737): Length of alternate bases must equal length of refence bases.
53058070	53058071	GG	GG	T
Mutation coordinate error (line 11853): Length of alternate bases must equal length of refence bases.
148004707	148004708	GT	GT	A
Mutation coordinate error (line 11966): Length of alternate bases must equal length of refence bases.
113418827	113418828	CC	CC	A
Mutation coordinate error (line 12000): Length of alternate bases must equal length of refence bases.
65461562	65461563	GG	GG	T
Mutation coordinate error (line 12087): Length of alternate bases must equal length of refence bases.
183255900	183255901	GG	GG	T
Mutation coordinate error (line 12103): Length of alternate bases must equal length of refence bases.
152470912	152470913	CC	CC	A
Mutation coordinate error (line 12104): Length of alternate bases must equal length of refence bases.
162890069	162890071	GNA	GNA	A
Mutation coordinate error (line 12151): Length of alternate bases must equal length of refence bases.
111995730	111995731	CA	CA	A
Mutation coordinate error (line 12389): Length of alternate bases must equal length of refence bases.
74507041	74507042	CG	CG	A
Mutation coordinate error (line 12483): Length of alternate bases must equal length of refence bases.
164467083	164467084	CC	CC	A
Mutation coordinate error (line 12619): Length of alternate bases must equal length of refence bases.
30131694	30131695	TG	TG	C
Mutation coordinate error (line 12709): Length of alternate bases must equal length of refence bases.
113519002	113519003	GG	GG	C
Mutation coordinate error (line 12711): Length of alternate bases must equal length of refence bases.
118159212	118159213	CC	CC	A
Mutation coordinate error (line 12812): Length of alternate bases must equal length of refence bases.
119045386	119045387	GG	GG	T
Mutation coordinate error (line 12902): Length of alternate bases must equal length of refence bases.
4810574	4810575	CC	CC	A
Mutation coordinate error (line 12970): Length of alternate bases must equal length of refence bases.
22271355	22271356	GG	GG	T
Mutation coordinate error (line 13249): Length of alternate bases must equal length of refence bases.
2577777	2577778	TG	TG	C
Mutation coordinate error (line 13252): Length of alternate bases must equal length of refence bases.
18549903	18549904	CC	CC	A
Mutation coordinate error (line 13266): Length of alternate bases must equal length of refence bases.
77170998	77170999	GC	GC	T
Mutation coordinate error (line 13373): Length of alternate bases must equal length of refence bases.
5068517	5068518	CC	CC	A
Mutation coordinate error (line 13378): Length of alternate bases must equal length of refence bases.
55432917	55432918	TC	TC	C
Mutation coordinate error (line 13456): Length of alternate bases must equal length of refence bases.
159275988	159275989	GG	GG	T
Mutation coordinate error (line 13487): Length of alternate bases must equal length of refence bases.
102751013	102751014	GG	GG	T
Mutation coordinate error (line 13528): Length of alternate bases must equal length of refence bases.
55339938	55339939	TC	TC	A
Mutation coordinate error (line 13613): Length of alternate bases must equal length of refence bases.
211481167	211481168	CC	CC	A
Mutation coordinate error (line 13628): Length of alternate bases must equal length of refence bases.
35910625	35910626	TC	TC	C
Mutation coordinate error (line 13631): Length of alternate bases must equal length of refence bases.
113831669	113831670	GG	GG	T
Mutation coordinate error (line 13649): Length of alternate bases must equal length of refence bases.
77618090	77618091	CC	CC	A
Mutation coordinate error (line 13658): Length of alternate bases must equal length of refence bases.
88880991	88880992	CC	CC	A
Mutation coordinate error (line 13749): Length of alternate bases must equal length of refence bases.
186072723	186072724	GA	GA	T
Mutation coordinate error (line 13971): Length of alternate bases must equal length of refence bases.
34985396	34985397	GG	GG	C
Mutation coordinate error (line 14041): Length of alternate bases must equal length of refence bases.
96707244	96707245	GG	GG	T
Mutation coordinate error (line 14138): Length of alternate bases must equal length of refence bases.
237732556	237732557	GG	GG	T
Mutation coordinate error (line 14222): Length of alternate bases must equal length of refence bases.
178634588	178634589	CC	CC	A
Mutation coordinate error (line 14313): Length of alternate bases must equal length of refence bases.
72036236	72036237	TC	TC	A
Mutation coordinate error (line 14331): Length of alternate bases must equal length of refence bases.
90650863	90650864	AC	AC	G
Mutation coordinate error (line 14430): Length of alternate bases must equal length of refence bases.
7805028	7805029	GG	GG	T
Mutation coordinate error (line 14441): Length of alternate bases must equal length of refence bases.
78560770	78560771	GG	GG	T
Mutation coordinate error (line 14528): Length of alternate bases must equal length of refence bases.
113547908	113547909	CC	CC	A
Mutation coordinate error (line 14542): Length of alternate bases must equal length of refence bases.
5443646	5443647	CC	CC	A
Mutation coordinate error (line 14594): Length of alternate bases must equal length of refence bases.
47887968	47887969	CC	CC	A
Mutation coordinate error (line 14668): Length of alternate bases must equal length of refence bases.
116599900	116599901	GG	GG	T
Mutation coordinate error (line 14676): Length of alternate bases must equal length of refence bases.
166892640	166892641	GG	GG	T
Mutation coordinate error (line 14682): Length of alternate bases must equal length of refence bases.
196825142	196825143	CT	CT	A
Mutation coordinate error (line 14685): Length of alternate bases must equal length of refence bases.
33617681	33617682	CC	CC	A
Mutation coordinate error (line 14694): Length of alternate bases must equal length of refence bases.
108229345	108229346	GG	GG	C
Mutation coordinate error (line 14737): Length of alternate bases must equal length of refence bases.
152536168	152536169	CC	CC	A
Mutation coordinate error (line 14738): Length of alternate bases must equal length of refence bases.
2255539	2255540	CC	CC	A
Mutation coordinate error (line 14811): Length of alternate bases must equal length of refence bases.
62038457	62038458	GC	GC	A
Mutation coordinate error (line 14847): Length of alternate bases must equal length of refence bases.
23929364	23929365	GA	GA	A
Mutation coordinate error (line 14867): Length of alternate bases must equal length of refence bases.
44062447	44062448	GC	GC	T
Mutation coordinate error (line 14874): Length of alternate bases must equal length of refence bases.
86076900	86076901	TC	TC	A
Mutation coordinate error (line 14913): Length of alternate bases must equal length of refence bases.
5131396	5131397	AG	AG	T
Mutation coordinate error (line 14932): Length of alternate bases must equal length of refence bases.
57335870	57335871	GG	GG	T
Mutation coordinate error (line 14935): Length of alternate bases must equal length of refence bases.
13830204	13830205	GG	GG	T
Mutation coordinate error (line 15012): Length of alternate bases must equal length of refence bases.
197781209	197781210	CC	CC	A
Mutation coordinate error (line 15128): Length of alternate bases must equal length of refence bases.
22369109	22369110	CT	CT	T
Mutation coordinate error (line 15129): Length of alternate bases must equal length of refence bases.
28544607	28544608	CC	CC	A
Mutation coordinate error (line 15142): Length of alternate bases must equal length of refence bases.
10427947	10427948	CC	CC	A
Mutation coordinate error (line 15172): Length of alternate bases must equal length of refence bases.
54932556	54932557	CC	CC	A
Mutation coordinate error (line 15193): Length of alternate bases must equal length of refence bases.
78427277	78427278	CC	CC	A
Mutation coordinate error (line 15227): Length of alternate bases must equal length of refence bases.
207646438	207646439	AT	AT	T
Mutation coordinate error (line 15291): Length of alternate bases must equal length of refence bases.
77763734	77763735	GG	GG	A
Mutation coordinate error (line 15305): Length of alternate bases must equal length of refence bases.
55419124	55419125	TT	TT	A
Mutation coordinate error (line 15340): Length of alternate bases must equal length of refence bases.
35703062	35703063	CC	CC	T
Mutation coordinate error (line 15357): Length of alternate bases must equal length of refence bases.
79801949	79801950	TC	TC	G
Mutation coordinate error (line 15657): Length of alternate bases must equal length of refence bases.
161561180	161561181	CT	CT	T
Mutation coordinate error (line 15682): Length of alternate bases must equal length of refence bases.
215844504	215844505	CC	CC	A
Mutation coordinate error (line 15703): Length of alternate bases must equal length of refence bases.
242052766	242052767	GA	GA	T
Mutation coordinate error (line 15853): Length of alternate bases must equal length of refence bases.
66270123	66270124	CC	CC	A
Mutation coordinate error (line 15865): Length of alternate bases must equal length of refence bases.
94693642	94693643	CC	CC	A
Mutation coordinate error (line 15887): Length of alternate bases must equal length of refence bases.
10464985	10464986	GG	GG	T
Mutation coordinate error (line 15895): Length of alternate bases must equal length of refence bases.
32010568	32010569	AG	AG	T
Mutation coordinate error (line 15924): Length of alternate bases must equal length of refence bases.
140166549	140166551	CNG	CNG	T
Mutation coordinate error (line 16040): Length of alternate bases must equal length of refence bases.
147600693	147600694	AC	AC	T
Mutation coordinate error (line 16041): Length of alternate bases must equal length of refence bases.
148801268	148801269	CC	CC	A
Mutation coordinate error (line 16145): Length of alternate bases must equal length of refence bases.
82369182	82369183	GG	GG	T
Mutation coordinate error (line 16217): Length of alternate bases must equal length of refence bases.
100933286	100933287	CT	CT	A
Mutation coordinate error (line 16285): Length of alternate bases must equal length of refence bases.
52439998	52439999	GC	GC	T
Mutation coordinate error (line 16335): Length of alternate bases must equal length of refence bases.
33927967	33927968	CC	CC	A
Mutation coordinate error (line 16424): Length of alternate bases must equal length of refence bases.
61611394	61611395	CC	CC	A
Mutation coordinate error (line 16427): Length of alternate bases must equal length of refence bases.
62050198	62050199	CC	CC	G
Mutation coordinate error (line 16429): Length of alternate bases must equal length of refence bases.
66982353	66982354	GC	GC	T
Mutation coordinate error (line 16436): Length of alternate bases must equal length of refence bases.
80136436	80136437	CC	CC	A
Mutation coordinate error (line 16452): Length of alternate bases must equal length of refence bases.
9046271	9046272	GG	GG	T
Mutation coordinate error (line 16586): Length of alternate bases must equal length of refence bases.
125686130	125686131	GG	GG	A
Mutation coordinate error (line 16659): Length of alternate bases must equal length of refence bases.
97806143	97806144	GG	GG	C
Mutation coordinate error (line 16794): Length of alternate bases must equal length of refence bases.
40029580	40029581	CC	CC	A
Mutation coordinate error (line 16998): Length of alternate bases must equal length of refence bases.
139401756	139401757	CC	CC	A
Mutation coordinate error (line 17068): Length of alternate bases must equal length of refence bases.
70413282	70413283	GG	GG	T
Mutation coordinate error (line 17107): Length of alternate bases must equal length of refence bases.
51830482	51830483	CA	CA	A
Mutation coordinate error (line 17184): Length of alternate bases must equal length of refence bases.
57328278	57328279	CC	CC	A
Mutation coordinate error (line 17296): Length of alternate bases must equal length of refence bases.
93803157	93803158	TG	TG	A
Mutation coordinate error (line 17340): Length of alternate bases must equal length of refence bases.
25778227	25778228	GG	GG	A
Mutation coordinate error (line 17379): Length of alternate bases must equal length of refence bases.
23762131	23762132	TG	TG	C
Mutation coordinate error (line 17551): Length of alternate bases must equal length of refence bases.
155003036	155003037	GG	GG	A
Mutation coordinate error (line 17569): Length of alternate bases must equal length of refence bases.
248551196	248551197	CC	CC	A
Mutation coordinate error (line 17665): Length of alternate bases must equal length of refence bases.
112452258	112452259	CC	CC	A
Mutation coordinate error (line 17674): Length of alternate bases must equal length of refence bases.
20441706	20441707	GG	GG	T
Mutation coordinate error (line 17741): Length of alternate bases must equal length of refence bases.
108923810	108923811	TC	TC	A
Mutation coordinate error (line 17742): Length of alternate bases must equal length of refence bases.
112361435	112361436	GG	GG	A
Mutation coordinate error (line 17847): Length of alternate bases must equal length of refence bases.
19288704	19288705	CC	CC	A
Mutation coordinate error (line 18000): Length of alternate bases must equal length of refence bases.
21747435	21747436	GA	GA	C
Mutation coordinate error (line 18109): Length of alternate bases must equal length of refence bases.
51920496	51920497	CC	CC	A
Mutation coordinate error (line 18144): Length of alternate bases must equal length of refence bases.
34128589	34128590	CC	CC	A
Mutation coordinate error (line 18294): Length of alternate bases must equal length of refence bases.
27419815	27419816	CC	CC	A
Mutation coordinate error (line 18342): Length of alternate bases must equal length of refence bases.
157361643	157361644	CC	CC	T
Mutation coordinate error (line 18347): Length of alternate bases must equal length of refence bases.
77768512	77768513	CC	CC	T
Mutation coordinate error (line 18482): Length of alternate bases must equal length of refence bases.
42882559	42882560	GC	GC	C
Mutation coordinate error (line 18637): Length of alternate bases must equal length of refence bases.
6305716	6305717	CC	CC	A
Mutation coordinate error (line 18847): Length of alternate bases must equal length of refence bases.
46307694	46307695	CC	CC	A
Mutation coordinate error (line 18944): Length of alternate bases must equal length of refence bases.
142574226	142574227	CC	CC	A
Mutation coordinate error (line 19015): Length of alternate bases must equal length of refence bases.
44639800	44639801	GC	GC	T
Mutation coordinate error (line 19036): Length of alternate bases must equal length of refence bases.
123676282	123676283	GG	GG	T
Mutation coordinate error (line 19207): Length of alternate bases must equal length of refence bases.
56243388	56243389	TG	TG	C
Mutation coordinate error (line 19243): Length of alternate bases must equal length of refence bases.
111078268	111078269	TG	TG	A
Mutation coordinate error (line 19273): Length of alternate bases must equal length of refence bases.
215848335	215848336	GA	GA	T
Mutation coordinate error (line 19279): Length of alternate bases must equal length of refence bases.
79312367	79312368	GA	GA	T
Mutation coordinate error (line 19299): Length of alternate bases must equal length of refence bases.
114158196	114158197	GG	GG	C
Mutation coordinate error (line 19384): Length of alternate bases must equal length of refence bases.
67794916	67794917	CC	CC	A
Mutation coordinate error (line 19550): Length of alternate bases must equal length of refence bases.
10085324	10085325	CA	CA	A
Mutation coordinate error (line 19567): Length of alternate bases must equal length of refence bases.
106890869	106890870	CA	CA	A
Mutation coordinate error (line 19649): Length of alternate bases must equal length of refence bases.
41049530	41049531	CC	CC	A
Mutation coordinate error (line 19716): Length of alternate bases must equal length of refence bases.
96152950	96152951	CC	CC	A
Mutation coordinate error (line 19717): Length of alternate bases must equal length of refence bases.
49048099	49048100	CC	CC	A
Mutation coordinate error (line 19722): Length of alternate bases must equal length of refence bases.
20480859	20480860	CC	CC	A
Mutation coordinate error (line 19733): Length of alternate bases must equal length of refence bases.
23612395	23612396	GC	GC	A
Mutation coordinate error (line 19792): Length of alternate bases must equal length of refence bases.
237893559	237893560	GG	GG	T
Mutation coordinate error (line 19977): Length of alternate bases must equal length of refence bases.
111059902	111059903	CC	CC	A
Mutation coordinate error (line 19986): Length of alternate bases must equal length of refence bases.
216591901	216591902	TG	TG	G
Mutation coordinate error (line 20042): Length of alternate bases must equal length of refence bases.
55136333	55136334	CC	CC	A
Mutation coordinate error (line 20066): Length of alternate bases must equal length of refence bases.
8996458	8996459	GC	GC	T
Mutation coordinate error (line 20084): Length of alternate bases must equal length of refence bases.
41586456	41586457	TG	TG	C
Mutation coordinate error (line 20087): Length of alternate bases must equal length of refence bases.
50053232	50053233	CC	CC	A
Mutation coordinate error (line 20093): Length of alternate bases must equal length of refence bases.
75003752	75003753	GG	GG	T
Mutation coordinate error (line 20188): Length of alternate bases must equal length of refence bases.
166918039	166918040	TG	TG	A
Mutation coordinate error (line 20230): Length of alternate bases must equal length of refence bases.
5080587	5080588	GG	GG	T
Mutation coordinate error (line 20232): Length of alternate bases must equal length of refence bases.
6048912	6048913	GG	GG	T
Mutation coordinate error (line 20279): Length of alternate bases must equal length of refence bases.
53421590	53421591	CC	CC	A
Mutation coordinate error (line 20370): Length of alternate bases must equal length of refence bases.
94528861	94528862	CC	CC	A
Mutation coordinate error (line 20420): Length of alternate bases must equal length of refence bases.
152544034	152544035	TC	TC	A
Mutation coordinate error (line 20463): Length of alternate bases must equal length of refence bases.
55964928	55964929	CC	CC	A
Mutation coordinate error (line 20465): Length of alternate bases must equal length of refence bases.
79391175	79391176	CG	CG	T
Mutation coordinate error (line 20552): Length of alternate bases must equal length of refence bases.
107574967	107574968	CC	CC	A
Mutation coordinate error (line 20598): Length of alternate bases must equal length of refence bases.
54903687	54903688	GG	GG	T
Mutation coordinate error (line 20712): Length of alternate bases must equal length of refence bases.
158636282	158636283	GG	GG	T
Mutation coordinate error (line 20871): Length of alternate bases must equal length of refence bases.
91090821	91090822	CT	CT	A
Mutation coordinate error (line 20998): Length of alternate bases must equal length of refence bases.
33626839	33626840	CG	CG	A
Mutation coordinate error (line 21043): Length of alternate bases must equal length of refence bases.
96866628	96866629	GG	GG	T
Mutation coordinate error (line 21148): Length of alternate bases must equal length of refence bases.
72926486	72926487	CT	CT	T
Mutation coordinate error (line 21923): Length of alternate bases must equal length of refence bases.
5463581	5463582	GG	GG	T
Mutation coordinate error (line 21964): Length of alternate bases must equal length of refence bases.
22094922	22094923	CG	CG	A
Mutation coordinate error (line 22243): Length of alternate bases must equal length of refence bases.
97172832	97172833	GA	GA	A
Mutation coordinate error (line 22527): Length of alternate bases must equal length of refence bases.
126229583	126229584	CC	CC	A
Mutation coordinate error (line 22530): Length of alternate bases must equal length of refence bases.
132319692	132319693	GG	GG	T
Mutation coordinate error (line 22556): Length of alternate bases must equal length of refence bases.
52860817	52860818	CC	CC	A
Mutation coordinate error (line 22566): Length of alternate bases must equal length of refence bases.
115544082	115544083	GG	GG	A
Mutation coordinate error (line 22636): Length of alternate bases must equal length of refence bases.
35903268	35903269	GG	GG	T
Mutation coordinate error (line 22641): Length of alternate bases must equal length of refence bases.
55874819	55874820	CC	CC	A
Mutation coordinate error (line 22703): Length of alternate bases must equal length of refence bases.
26789940	26789941	CC	CC	A
Mutation coordinate error (line 22711): Length of alternate bases must equal length of refence bases.
95126238	95126239	GA	GA	A
Mutation coordinate error (line 22716): Length of alternate bases must equal length of refence bases.
1271328	1271329	CC	CC	A
Mutation coordinate error (line 22816): Length of alternate bases must equal length of refence bases.
40099429	40099430	CG	CG	A
Mutation coordinate error (line 22847): Length of alternate bases must equal length of refence bases.
87717830	87717831	AC	AC	T
Mutation coordinate error (line 22866): Length of alternate bases must equal length of refence bases.
54428241	54428242	TG	TG	A
Mutation coordinate error (line 22922): Length of alternate bases must equal length of refence bases.
47823944	47823945	GG	GG	A
Mutation coordinate error (line 23026): Length of alternate bases must equal length of refence bases.
11809674	11809675	GC	GC	T
Mutation coordinate error (line 23073): Length of alternate bases must equal length of refence bases.
130293249	130293250	CA	CA	A
Mutation coordinate error (line 23168): Length of alternate bases must equal length of refence bases.
5289800	5289801	GA	GA	T
Mutation coordinate error (line 23184): Length of alternate bases must equal length of refence bases.
88780992	88780993	GG	GG	A
Mutation coordinate error (line 23196): Length of alternate bases must equal length of refence bases.
124242547	124242548	TC	TC	A
Mutation coordinate error (line 23204): Length of alternate bases must equal length of refence bases.
21876521	21876522	CC	CC	A
Mutation coordinate error (line 23323): Length of alternate bases must equal length of refence bases.
205969167	205969168	GG	GG	T
Mutation coordinate error (line 23387): Length of alternate bases must equal length of refence bases.
83809999	83810000	GG	GG	T
Mutation coordinate error (line 23437): Length of alternate bases must equal length of refence bases.
29960893	29960894	AG	AG	C
Mutation coordinate error (line 23471): Length of alternate bases must equal length of refence bases.
168099528	168099529	CC	CC	A
Mutation coordinate error (line 23473): Length of alternate bases must equal length of refence bases.
207175031	207175032	CC	CC	A
Mutation coordinate error (line 23518): Length of alternate bases must equal length of refence bases.
124605305	124605306	CC	CC	T
Mutation coordinate error (line 23544): Length of alternate bases must equal length of refence bases.
28944428	28944429	CA	CA	A
Mutation coordinate error (line 23803): Length of alternate bases must equal length of refence bases.
57326512	57326513	CC	CC	A
Mutation coordinate error (line 23941): Length of alternate bases must equal length of refence bases.
64967767	64967768	TC	TC	A
Mutation coordinate error (line 24053): Length of alternate bases must equal length of refence bases.
98421889	98421890	CC	CC	A
Mutation coordinate error (line 24079): Length of alternate bases must equal length of refence bases.
119331936	119331937	TC	TC	A
Mutation coordinate error (line 24090): Length of alternate bases must equal length of refence bases.
110791868	110791869	CT	CT	A
Mutation coordinate error (line 24196): Length of alternate bases must equal length of refence bases.
93542995	93542996	CA	CA	T
Mutation coordinate error (line 24299): Length of alternate bases must equal length of refence bases.
118223293	118223294	CT	CT	A
Mutation coordinate error (line 24532): Length of alternate bases must equal length of refence bases.
100677564	100677565	CC	CC	A
Mutation coordinate error (line 24837): Length of alternate bases must equal length of refence bases.
47575431	47575432	GG	GG	A
Mutation coordinate error (line 24894): Length of alternate bases must equal length of refence bases.
158449733	158449734	GG	GG	T
Mutation coordinate error (line 24960): Length of alternate bases must equal length of refence bases.
37514854	37514855	GG	GG	A
Mutation coordinate error (line 25106): Length of alternate bases must equal length of refence bases.
124132346	124132347	TC	TC	A
Mutation coordinate error (line 25387): Length of alternate bases must equal length of refence bases.
24761436	24761437	CC	CC	A
Mutation coordinate error (line 25419): Length of alternate bases must equal length of refence bases.
67154905	67154906	CG	CG	T
Mutation coordinate error (line 25470): Length of alternate bases must equal length of refence bases.
17278303	17278304	GG	GG	T
Mutation coordinate error (line 25475): Length of alternate bases must equal length of refence bases.
70097753	70097754	GG	GG	T
Mutation coordinate error (line 25612): Length of alternate bases must equal length of refence bases.
56448400	56448401	GG	GG	T
Mutation coordinate error (line 25614): Length of alternate bases must equal length of refence bases.
66356236	66356237	GG	GG	T
Mutation coordinate error (line 25657): Length of alternate bases must equal length of refence bases.
166572067	166572068	GG	GG	T
Mutation coordinate error (line 26034): Length of alternate bases must equal length of refence bases.
78432396	78432397	CC	CC	A
Mutation coordinate error (line 26037): Length of alternate bases must equal length of refence bases.
120050217	120050218	GG	GG	A
Mutation coordinate error (line 26040): Length of alternate bases must equal length of refence bases.
159683523	159683524	TC	TC	A
Mutation coordinate error (line 26169): Length of alternate bases must equal length of refence bases.
18028975	18028976	CA	CA	A
Mutation coordinate error (line 26174): Length of alternate bases must equal length of refence bases.
152826170	152826171	CG	CG	T
Mutation coordinate error (line 26279): Length of alternate bases must equal length of refence bases.
132192291	132192292	CC	CC	A
Mutation coordinate error (line 26302): Length of alternate bases must equal length of refence bases.
48429340	48429341	GG	GG	C
Mutation coordinate error (line 26371): Length of alternate bases must equal length of refence bases.
19996472	19996473	CC	CC	A
Mutation coordinate error (line 26405): Length of alternate bases must equal length of refence bases.
21347115	21347116	TG	TG	C
Mutation coordinate error (line 26540): Length of alternate bases must equal length of refence bases.
81953096	81953097	GG	GG	T
Mutation coordinate error (line 26619): Length of alternate bases must equal length of refence bases.
240976973	240976974	CA	CA	A
Mutation coordinate error (line 26845): Length of alternate bases must equal length of refence bases.
19212005	19212006	GC	GC	A
Mutation coordinate error (line 26854): Length of alternate bases must equal length of refence bases.
57383237	57383238	GG	GG	T
Mutation coordinate error (line 26920): Length of alternate bases must equal length of refence bases.
73800227	73800228	GG	GG	T
Mutation coordinate error (line 26944): Length of alternate bases must equal length of refence bases.
217279579	217279581	ANG	ANG	C
Mutation coordinate error (line 26993): Length of alternate bases must equal length of refence bases.
47527573	47527574	GG	GG	T
Mutation coordinate error (line 26995): Length of alternate bases must equal length of refence bases.
57522051	57522052	TC	TC	A
Mutation coordinate error (line 27058): Length of alternate bases must equal length of refence bases.
102074447	102074448	CC	CC	A
Mutation coordinate error (line 27151): Length of alternate bases must equal length of refence bases.
124339201	124339203	TNG	TNG	C
Mutation coordinate error (line 27245): Length of alternate bases must equal length of refence bases.
33022978	33022979	CC	CC	T
Mutation coordinate error (line 27281): Length of alternate bases must equal length of refence bases.
48629453	48629454	GG	GG	T
Mutation coordinate error (line 27414): Length of alternate bases must equal length of refence bases.
272235	272236	GG	GG	C
Mutation coordinate error (line 27435): Length of alternate bases must equal length of refence bases.
14941937	14941938	CC	CC	T
Mutation coordinate error (line 27451): Length of alternate bases must equal length of refence bases.
180320683	180320684	GA	GA	T
Mutation coordinate error (line 27526): Length of alternate bases must equal length of refence bases.
26849102	26849103	CC	CC	A
Mutation coordinate error (line 27561): Length of alternate bases must equal length of refence bases.
15702086	15702087	CC	CC	A
Mutation coordinate error (line 27574): Length of alternate bases must equal length of refence bases.
33961618	33961619	GA	GA	T
Mutation coordinate error (line 27580): Length of alternate bases must equal length of refence bases.
84592663	84592664	AG	AG	T
Mutation coordinate error (line 27684): Length of alternate bases must equal length of refence bases.
48621171	48621172	GG	GG	A
Mutation coordinate error (line 27720): Length of alternate bases must equal length of refence bases.
92508999	92509000	CC	CC	A
Mutation coordinate error (line 27734): Length of alternate bases must equal length of refence bases.
89531714	89531715	GG	GG	T
Mutation coordinate error (line 27782): Length of alternate bases must equal length of refence bases.
30253775	30253776	CC	CC	A
Mutation coordinate error (line 27792): Length of alternate bases must equal length of refence bases.
50133404	50133405	CC	CC	A
Mutation coordinate error (line 27843): Length of alternate bases must equal length of refence bases.
119301046	119301047	GA	GA	T
Mutation coordinate error (line 27888): Length of alternate bases must equal length of refence bases.
77765936	77765937	CC	CC	A
Mutation coordinate error (line 27910): Length of alternate bases must equal length of refence bases.
55433068	55433069	GG	GG	A
Mutation coordinate error (line 27921): Length of alternate bases must equal length of refence bases.
15095561	15095562	CA	CA	A
Mutation coordinate error (line 27951): Length of alternate bases must equal length of refence bases.
60753804	60753805	GG	GG	T
Mutation coordinate error (line 27967): Length of alternate bases must equal length of refence bases.
21300974	21300975	CA	CA	T
Mutation coordinate error (line 28004): Length of alternate bases must equal length of refence bases.
11193214	11193215	CC	CC	A
Mutation coordinate error (line 28060): Length of alternate bases must equal length of refence bases.
132269995	132269996	AG	AG	C
Mutation coordinate error (line 28066): Length of alternate bases must equal length of refence bases.
156590131	156590133	GNC	GNC	T
Mutation coordinate error (line 28089): Length of alternate bases must equal length of refence bases.
124708324	124708325	CA	CA	A
Mutation coordinate error (line 28093): Length of alternate bases must equal length of refence bases.
6631392	6631393	GC	GC	T
Mutation coordinate error (line 28145): Length of alternate bases must equal length of refence bases.
9257705	9257706	GG	GG	T
Mutation coordinate error (line 28168): Length of alternate bases must equal length of refence bases.
17669238	17669239	CG	CG	G
Mutation coordinate error (line 28215): Length of alternate bases must equal length of refence bases.
131103469	131103470	TC	TC	C
Mutation coordinate error (line 28314): Length of alternate bases must equal length of refence bases.
69002947	69002948	GA	GA	T
Mutation coordinate error (line 28340): Length of alternate bases must equal length of refence bases.
102120670	102120671	GG	GG	C
Mutation coordinate error (line 28429): Length of alternate bases must equal length of refence bases.
17327016	17327017	GG	GG	T
Mutation coordinate error (line 28583): Length of alternate bases must equal length of refence bases.
121448635	121448636	CC	CC	A
Mutation coordinate error (line 28596): Length of alternate bases must equal length of refence bases.
77348510	77348511	GC	GC	C
Mutation coordinate error (line 28731): Length of alternate bases must equal length of refence bases.
77290776	77290777	CC	CC	A
Mutation coordinate error (line 28813): Length of alternate bases must equal length of refence bases.
20668427	20668428	CC	CC	G
Mutation coordinate error (line 28857): Length of alternate bases must equal length of refence bases.
20215703	20215704	CC	CC	A
Mutation coordinate error (line 28877): Length of alternate bases must equal length of refence bases.
53499487	53499488	TG	TG	G
Mutation coordinate error (line 28886): Length of alternate bases must equal length of refence bases.
10412856	10412857	CC	CC	A
Mutation coordinate error (line 28896): Length of alternate bases must equal length of refence bases.
65181344	65181345	CC	CC	A
Mutation coordinate error (line 28987): Length of alternate bases must equal length of refence bases.
158576522	158576523	TG	TG	C
Mutation coordinate error (line 29014): Length of alternate bases must equal length of refence bases.
221912899	221912900	GA	GA	A
Mutation coordinate error (line 29036): Length of alternate bases must equal length of refence bases.
248685105	248685106	CC	CC	A
Mutation coordinate error (line 29079): Length of alternate bases must equal length of refence bases.
168106535	168106537	ANA	ANA	G
Mutation coordinate error (line 29081): Length of alternate bases must equal length of refence bases.
170062925	170062926	GA	GA	A
Mutation coordinate error (line 29186): Length of alternate bases must equal length of refence bases.
45303823	45303824	CC	CC	A
Mutation coordinate error (line 29281): Length of alternate bases must equal length of refence bases.
106524666	106524667	GG	GG	T
Mutation coordinate error (line 29375): Length of alternate bases must equal length of refence bases.
7059931	7059932	GG	GG	T
Mutation coordinate error (line 29446): Length of alternate bases must equal length of refence bases.
51851227	51851228	CA	CA	T
Mutation coordinate error (line 29480): Length of alternate bases must equal length of refence bases.
34419656	34419657	CA	CA	A
Mutation coordinate error (line 29540): Length of alternate bases must equal length of refence bases.
34072205	34072206	TG	TG	A
Mutation coordinate error (line 29561): Length of alternate bases must equal length of refence bases.
61305083	61305084	GC	GC	C
Mutation coordinate error (line 29564): Length of alternate bases must equal length of refence bases.
74622041	74622042	CA	CA	T
Mutation coordinate error (line 29639): Length of alternate bases must equal length of refence bases.
53661239	53661240	TC	TC	A
Mutation coordinate error (line 29738): Length of alternate bases must equal length of refence bases.
72891722	72891723	TC	TC	A
Mutation coordinate error (line 29772): Length of alternate bases must equal length of refence bases.
20848129	20848130	GC	GC	T
Mutation coordinate error (line 29800): Length of alternate bases must equal length of refence bases.
42992539	42992540	CC	CC	A
Mutation coordinate error (line 29947): Length of alternate bases must equal length of refence bases.
55340262	55340263	TG	TG	C
Mutation coordinate error (line 30097): Length of alternate bases must equal length of refence bases.
227662963	227662964	CC	CC	A
Mutation coordinate error (line 30159): Length of alternate bases must equal length of refence bases.
27135018	27135019	CC	CC	A
Mutation coordinate error (line 30174): Length of alternate bases must equal length of refence bases.
25323754	25323755	GC	GC	T
Mutation coordinate error (line 30413): Length of alternate bases must equal length of refence bases.
79394605	79394606	GG	GG	C
Mutation coordinate error (line 30468): Length of alternate bases must equal length of refence bases.
104385621	104385622	CC	CC	A
Mutation coordinate error (line 30475): Length of alternate bases must equal length of refence bases.
27059274	27059275	GC	GC	A
Mutation coordinate error (line 30499): Length of alternate bases must equal length of refence bases.
1137525	1137526	GG	GG	T
Mutation coordinate error (line 30519): Length of alternate bases must equal length of refence bases.
101759882	101759883	CC	CC	A
Mutation coordinate error (line 30574): Length of alternate bases must equal length of refence bases.
61943356	61943357	GC	GC	T
Mutation coordinate error (line 30602): Length of alternate bases must equal length of refence bases.
158590100	158590101	CC	CC	A
Mutation coordinate error (line 30620): Length of alternate bases must equal length of refence bases.
39176662	39176663	CC	CC	A
Mutation coordinate error (line 30655): Length of alternate bases must equal length of refence bases.
51524724	51524725	CA	CA	A
Mutation coordinate error (line 30660): Length of alternate bases must equal length of refence bases.
152163791	152163792	AG	AG	T
Mutation coordinate error (line 30833): Length of alternate bases must equal length of refence bases.
26056542	26056543	GG	GG	A
Mutation coordinate error (line 30844): Length of alternate bases must equal length of refence bases.
88965803	88965804	GC	GC	T
Mutation coordinate error (line 30852): Length of alternate bases must equal length of refence bases.
116631873	116631874	TC	TC	A
Mutation coordinate error (line 30853): Length of alternate bases must equal length of refence bases.
139164914	139164915	GG	GG	T
Mutation coordinate error (line 30869): Length of alternate bases must equal length of refence bases.
57958903	57958904	CC	CC	A
Mutation coordinate error (line 31070): Length of alternate bases must equal length of refence bases.
179446770	179446771	GG	GG	T
Mutation coordinate error (line 31098): Length of alternate bases must equal length of refence bases.
50605613	50605614	TC	TC	G
Mutation coordinate error (line 31185): Length of alternate bases must equal length of refence bases.
176564197	176564198	CA	CA	A
Mutation coordinate error (line 31200): Length of alternate bases must equal length of refence bases.
240341368	240341369	GG	GG	T
Mutation coordinate error (line 31239): Length of alternate bases must equal length of refence bases.
72634119	72634120	TG	TG	G
Mutation coordinate error (line 31268): Length of alternate bases must equal length of refence bases.
13946086	13946087	CC	CC	A
Mutation coordinate error (line 31301): Length of alternate bases must equal length of refence bases.
1018760	1018761	GG	GG	T
Mutation coordinate error (line 31317): Length of alternate bases must equal length of refence bases.
43826519	43826520	CC	CC	A
Mutation coordinate error (line 31370): Length of alternate bases must equal length of refence bases.
9324709	9324710	GG	GG	T
Mutation coordinate error (line 31400): Length of alternate bases must equal length of refence bases.
15287980	15287981	CC	CC	A
Mutation coordinate error (line 31425): Length of alternate bases must equal length of refence bases.
123518143	123518144	CC	CC	A
Mutation coordinate error (line 31498): Length of alternate bases must equal length of refence bases.
143412060	143412061	CC	CC	A
Mutation coordinate error (line 31531): Length of alternate bases must equal length of refence bases.
30638192	30638193	CC	CC	A
Mutation coordinate error (line 31535): Length of alternate bases must equal length of refence bases.
57372301	57372302	CC	CC	A
Mutation coordinate error (line 31566): Length of alternate bases must equal length of refence bases.
28998134	28998135	CC	CC	A
Mutation coordinate error (line 31658): Length of alternate bases must equal length of refence bases.
70531872	70531873	CC	CC	A
Mutation coordinate error (line 31661): Length of alternate bases must equal length of refence bases.
10438500	10438501	CA	CA	A
Mutation coordinate error (line 31681): Length of alternate bases must equal length of refence bases.
35761435	35761436	CG	CG	A
Mutation coordinate error (line 31710): Length of alternate bases must equal length of refence bases.
70823780	70823781	AG	AG	G
Mutation coordinate error (line 31814): Length of alternate bases must equal length of refence bases.
202702639	202702640	GG	GG	A
Mutation coordinate error (line 31898): Length of alternate bases must equal length of refence bases.
230638826	230638827	TC	TC	A
Mutation coordinate error (line 31974): Length of alternate bases must equal length of refence bases.
186395356	186395357	CC	CC	G
Mutation coordinate error (line 32107): Length of alternate bases must equal length of refence bases.
50791467	50791468	GG	GG	C
Mutation coordinate error (line 32163): Length of alternate bases must equal length of refence bases.
57188291	57188292	GG	GG	T
Mutation coordinate error (line 32298): Length of alternate bases must equal length of refence bases.
124399867	124399868	CC	CC	T
Mutation coordinate error (line 32426): Length of alternate bases must equal length of refence bases.
129467578	129467579	GG	GG	T
Mutation coordinate error (line 32443): Length of alternate bases must equal length of refence bases.
110829259	110829260	CC	CC	A
Mutation coordinate error (line 32599): Length of alternate bases must equal length of refence bases.
2750347	2750348	GG	GG	T
Mutation coordinate error (line 32681): Length of alternate bases must equal length of refence bases.
57089033	57089034	TA	TA	A
Mutation coordinate error (line 32748): Length of alternate bases must equal length of refence bases.
69478906	69478907	CG	CG	G
Mutation coordinate error (line 32767): Length of alternate bases must equal length of refence bases.
151870215	151870217	CNC	CNC	A
Mutation coordinate error (line 32789): Length of alternate bases must equal length of refence bases.
233296087	233296088	CC	CC	T
Mutation coordinate error (line 32799): Length of alternate bases must equal length of refence bases.
10861396	10861397	GG	GG	T
Mutation coordinate error (line 32803): Length of alternate bases must equal length of refence bases.
98109948	98109949	GG	GG	C
Mutation coordinate error (line 33059): Length of alternate bases must equal length of refence bases.
75107143	75107144	CC	CC	A
Mutation coordinate error (line 33122): Length of alternate bases must equal length of refence bases.
66463151	66463152	GG	GG	T
Mutation coordinate error (line 33163): Length of alternate bases must equal length of refence bases.
13761674	13761675	CC	CC	T
Mutation coordinate error (line 33178): Length of alternate bases must equal length of refence bases.
65489813	65489814	CC	CC	A
Mutation coordinate error (line 33191): Length of alternate bases must equal length of refence bases.
22156774	22156775	TG	TG	A
Mutation coordinate error (line 33241): Length of alternate bases must equal length of refence bases.
97526534	97526535	GT	GT	A
Mutation coordinate error (line 33368): Length of alternate bases must equal length of refence bases.
18671607	18671608	GG	GG	T
Mutation coordinate error (line 33377): Length of alternate bases must equal length of refence bases.
70351922	70351923	GG	GG	T
Mutation coordinate error (line 33484): Length of alternate bases must equal length of refence bases.
46289601	46289602	CC	CC	A
Mutation coordinate error (line 33586): Length of alternate bases must equal length of refence bases.
87041018	87041019	GG	GG	T
Mutation coordinate error (line 33600): Length of alternate bases must equal length of refence bases.
248004991	248004992	CC	CC	A
Mutation coordinate error (line 33603): Length of alternate bases must equal length of refence bases.
61333770	61333771	GG	GG	C
Mutation coordinate error (line 33705): Length of alternate bases must equal length of refence bases.
6340741	6340742	GC	GC	C
Mutation coordinate error (line 33729): Length of alternate bases must equal length of refence bases.
42356319	42356320	GG	GG	C
Mutation coordinate error (line 33898): Length of alternate bases must equal length of refence bases.
102916045	102916046	CA	CA	T
Mutation coordinate error (line 33937): Length of alternate bases must equal length of refence bases.
19478225	19478226	CA	CA	A
Mutation coordinate error (line 34056): Length of alternate bases must equal length of refence bases.
3006571	3006572	CC	CC	A
Mutation coordinate error (line 34064): Length of alternate bases must equal length of refence bases.
52723042	52723043	GG	GG	T
Mutation coordinate error (line 34148): Length of alternate bases must equal length of refence bases.
237870313	237870314	GG	GG	T
Mutation coordinate error (line 34163): Length of alternate bases must equal length of refence bases.
44021646	44021647	GG	GG	T
Mutation coordinate error (line 34210): Length of alternate bases must equal length of refence bases.
20619273	20619274	GG	GG	T
Mutation coordinate error (line 34332): Length of alternate bases must equal length of refence bases.
54348956	54348957	CA	CA	T
Mutation coordinate error (line 34428): Length of alternate bases must equal length of refence bases.
24380969	24380970	GG	GG	C
Mutation coordinate error (line 34441): Length of alternate bases must equal length of refence bases.
55028721	55028722	GG	GG	T
Mutation coordinate error (line 34468): Length of alternate bases must equal length of refence bases.
153631282	153631283	CC	CC	A
Mutation coordinate error (line 34562): Length of alternate bases must equal length of refence bases.
206902762	206902763	GC	GC	T
Mutation coordinate error (line 34570): Length of alternate bases must equal length of refence bases.
26950669	26950670	CT	CT	T
Mutation coordinate error (line 34576): Length of alternate bases must equal length of refence bases.
73928183	73928184	GC	GC	C
Mutation coordinate error (line 34599): Length of alternate bases must equal length of refence bases.
121417551	121417552	CC	CC	A
Mutation coordinate error (line 34612): Length of alternate bases must equal length of refence bases.
69696583	69696584	GG	GG	T
Mutation coordinate error (line 34693): Length of alternate bases must equal length of refence bases.
87373339	87373340	CC	CC	A
Mutation coordinate error (line 34766): Length of alternate bases must equal length of refence bases.
7037633	7037634	GC	GC	T
Mutation coordinate error (line 34945): Length of alternate bases must equal length of refence bases.
32631709	32631710	CC	CC	A
Mutation coordinate error (line 34969): Length of alternate bases must equal length of refence bases.
119290968	119290969	GG	GG	A
Mutation coordinate error (line 34989): Length of alternate bases must equal length of refence bases.
42360618	42360619	CC	CC	A
Mutation coordinate error (line 35002): Length of alternate bases must equal length of refence bases.
293122	293123	GC	GC	C
Mutation coordinate error (line 35021): Length of alternate bases must equal length of refence bases.
9721953	9721954	CC	CC	A
Mutation coordinate error (line 35120): Length of alternate bases must equal length of refence bases.
201436332	201436333	AG	AG	C
Mutation coordinate error (line 35148): Length of alternate bases must equal length of refence bases.
177032832	177032833	CC	CC	A
Mutation coordinate error (line 35157): Length of alternate bases must equal length of refence bases.
32917165	32917166	CG	CG	A
Mutation coordinate error (line 35176): Length of alternate bases must equal length of refence bases.
86479772	86479773	CC	CC	T
Mutation coordinate error (line 35283): Length of alternate bases must equal length of refence bases.
6243368	6243369	TC	TC	A
Mutation coordinate error (line 35333): Length of alternate bases must equal length of refence bases.
98058805	98058806	CC	CC	A
Mutation coordinate error (line 35338): Length of alternate bases must equal length of refence bases.
154523919	154523920	GC	GC	C
Mutation coordinate error (line 35368): Length of alternate bases must equal length of refence bases.
115395053	115395054	CC	CC	A
Mutation coordinate error (line 35407): Length of alternate bases must equal length of refence bases.
125487119	125487120	CC	CC	A
Mutation coordinate error (line 35520): Length of alternate bases must equal length of refence bases.
160146715	160146716	TC	TC	A
Mutation coordinate error (line 35581): Length of alternate bases must equal length of refence bases.
20107455	20107456	CG	CG	G
Mutation coordinate error (line 35598): Length of alternate bases must equal length of refence bases.
27558492	27558493	TA	TA	G
Mutation coordinate error (line 35603): Length of alternate bases must equal length of refence bases.
136272165	136272167	TNC	TNC	G
Mutation coordinate error (line 35660): Length of alternate bases must equal length of refence bases.
30525157	30525158	AC	AC	T
Mutation coordinate error (line 35681): Length of alternate bases must equal length of refence bases.
15734154	15734155	TG	TG	C
Mutation coordinate error (line 35858): Length of alternate bases must equal length of refence bases.
55872567	55872568	GG	GG	A
Mutation coordinate error (line 35876): Length of alternate bases must equal length of refence bases.
26217730	26217731	GG	GG	A
Mutation coordinate error (line 36023): Length of alternate bases must equal length of refence bases.
78706414	78706415	CC	CC	A
Mutation coordinate error (line 36028): Length of alternate bases must equal length of refence bases.
72634150	72634151	CC	CC	A
Mutation coordinate error (line 36222): Length of alternate bases must equal length of refence bases.
27092947	27092948	GG	GG	C
Mutation coordinate error (line 36313): Length of alternate bases must equal length of refence bases.
19747089	19747090	CC	CC	A
Mutation coordinate error (line 36347): Length of alternate bases must equal length of refence bases.
127912763	127912764	CC	CC	A
Mutation coordinate error (line 36352): Length of alternate bases must equal length of refence bases.
165848810	165848811	GG	GG	T
Mutation coordinate error (line 36369): Length of alternate bases must equal length of refence bases.
146825794	146825795	GG	GG	T
Mutation coordinate error (line 36379): Length of alternate bases must equal length of refence bases.
77775458	77775459	CC	CC	A
Mutation coordinate error (line 36394): Length of alternate bases must equal length of refence bases.
61832138	61832139	GC	GC	A
Mutation coordinate error (line 36494): Length of alternate bases must equal length of refence bases.
20340853	20340854	GG	GG	T
Mutation coordinate error (line 36500): Length of alternate bases must equal length of refence bases.
51143492	51143493	GG	GG	T
Mutation coordinate error (line 36575): Length of alternate bases must equal length of refence bases.
140756055	140756056	GA	GA	T
Mutation coordinate error (line 36779): Length of alternate bases must equal length of refence bases.
13719032	13719033	GG	GG	T
Mutation coordinate error (line 36788): Length of alternate bases must equal length of refence bases.
179757699	179757700	CC	CC	A
Mutation coordinate error (line 36863): Length of alternate bases must equal length of refence bases.
64061895	64061896	CC	CC	A
Mutation coordinate error (line 36892): Length of alternate bases must equal length of refence bases.
19481080	19481081	GG	GG	C
Mutation coordinate error (line 36926): Length of alternate bases must equal length of refence bases.
20505152	20505153	CC	CC	A
Mutation coordinate error (line 36960): Length of alternate bases must equal length of refence bases.
135961564	135961565	CC	CC	A
Mutation coordinate error (line 36969): Length of alternate bases must equal length of refence bases.
153588595	153588596	TG	TG	C
Mutation coordinate error (line 36986): Length of alternate bases must equal length of refence bases.
197056045	197056046	CT	CT	A
Mutation coordinate error (line 36988): Length of alternate bases must equal length of refence bases.
204971757	204971758	CC	CC	A
Mutation coordinate error (line 37045): Length of alternate bases must equal length of refence bases.
13357058	13357059	CC	CC	T
Mutation coordinate error (line 37091): Length of alternate bases must equal length of refence bases.
78187123	78187124	AG	AG	G
Mutation coordinate error (line 37112): Length of alternate bases must equal length of refence bases.
7573982	7573983	CC	CC	A
Mutation coordinate error (line 37225): Length of alternate bases must equal length of refence bases.
170380642	170380643	GG	GG	T
Mutation coordinate error (line 37231): Length of alternate bases must equal length of refence bases.
38851775	38851776	GT	GT	T
Mutation coordinate error (line 37257): Length of alternate bases must equal length of refence bases.
150840947	150840948	GG	GG	T
Mutation coordinate error (line 37273): Length of alternate bases must equal length of refence bases.
35079502	35079503	GA	GA	A
Mutation coordinate error (line 37481): Length of alternate bases must equal length of refence bases.
33380528	33380529	GA	GA	A
Mutation coordinate error (line 37518): Length of alternate bases must equal length of refence bases.
55111277	55111278	GG	GG	T
Mutation coordinate error (line 37519): Length of alternate bases must equal length of refence bases.
62349016	62349017	GG	GG	A
Mutation coordinate error (line 37684): Length of alternate bases must equal length of refence bases.
97852251	97852252	CC	CC	A
Mutation coordinate error (line 37706): Length of alternate bases must equal length of refence bases.
175530260	175530261	CC	CC	A
Mutation coordinate error (line 37756): Length of alternate bases must equal length of refence bases.
113780125	113780126	CC	CC	A
Mutation coordinate error (line 37781): Length of alternate bases must equal length of refence bases.
7231835	7231836	CC	CC	A
Mutation coordinate error (line 37797): Length of alternate bases must equal length of refence bases.
5903744	5903745	GG	GG	A
Mutation coordinate error (line 37799): Length of alternate bases must equal length of refence bases.
37531435	37531436	GG	GG	T
Mutation coordinate error (line 37842): Length of alternate bases must equal length of refence bases.
168549299	168549300	AG	AG	T
Mutation coordinate error (line 37903): Length of alternate bases must equal length of refence bases.
14801436	14801437	GG	GG	C
Mutation coordinate error (line 37933): Length of alternate bases must equal length of refence bases.
82369222	82369223	CC	CC	A
Mutation coordinate error (line 37964): Length of alternate bases must equal length of refence bases.
28962925	28962926	TT	TT	A
Mutation coordinate error (line 37994): Length of alternate bases must equal length of refence bases.
102738950	102738951	CA	CA	A
Mutation coordinate error (line 38144): Length of alternate bases must equal length of refence bases.
26970223	26970224	CC	CC	A
Mutation coordinate error (line 38197): Length of alternate bases must equal length of refence bases.
31874249	31874250	CA	CA	A
Mutation coordinate error (line 38277): Length of alternate bases must equal length of refence bases.
19747261	19747262	CG	CG	A
Mutation coordinate error (line 38399): Length of alternate bases must equal length of refence bases.
11903423	11903424	TG	TG	C
Mutation coordinate error (line 38431): Length of alternate bases must equal length of refence bases.
153697756	153697757	CC	CC	A
Mutation coordinate error (line 38450): Length of alternate bases must equal length of refence bases.
153317794	153317795	GC	GC	A
Mutation coordinate error (line 38519): Length of alternate bases must equal length of refence bases.
77334898	77334899	TA	TA	A
Mutation coordinate error (line 38550): Length of alternate bases must equal length of refence bases.
143632546	143632547	CC	CC	T
Mutation coordinate error (line 38560): Length of alternate bases must equal length of refence bases.
92401612	92401613	GG	GG	T
Mutation coordinate error (line 38904): Length of alternate bases must equal length of refence bases.
77767662	77767663	GG	GG	T
Mutation coordinate error (line 38982): Length of alternate bases must equal length of refence bases.
101873408	101873409	GA	GA	T
Mutation coordinate error (line 39179): Length of alternate bases must equal length of refence bases.
147128309	147128310	CC	CC	A
Mutation coordinate error (line 39259): Length of alternate bases must equal length of refence bases.
94931587	94931588	AG	AG	T
Mutation coordinate error (line 39269): Length of alternate bases must equal length of refence bases.
26722124	26722125	GG	GG	T
Mutation coordinate error (line 39304): Length of alternate bases must equal length of refence bases.
72291069	72291070	GG	GG	T
Mutation coordinate error (line 39428): Length of alternate bases must equal length of refence bases.
26299711	26299712	GG	GG	T
Mutation coordinate error (line 39510): Length of alternate bases must equal length of refence bases.
17191060	17191061	CC	CC	G
Mutation coordinate error (line 39624): Length of alternate bases must equal length of refence bases.
121217337	121217338	CC	CC	A
Mutation coordinate error (line 39692): Length of alternate bases must equal length of refence bases.
143632691	143632692	CC	CC	A
Mutation coordinate error (line 39860): Length of alternate bases must equal length of refence bases.
140271147	140271148	GC	GC	T
Mutation coordinate error (line 40203): Length of alternate bases must equal length of refence bases.
112729979	112729980	TT	TT	A
Mutation coordinate error (line 40208): Length of alternate bases must equal length of refence bases.
154860077	154860078	CC	CC	A
Mutation coordinate error (line 40450): Length of alternate bases must equal length of refence bases.
156920133	156920134	CC	CC	A
Mutation coordinate error (line 40512): Length of alternate bases must equal length of refence bases.
101997647	101997649	CNT	CNT	A
Mutation coordinate error (line 40564): Length of alternate bases must equal length of refence bases.
125298951	125298952	GG	GG	T
Mutation coordinate error (line 40606): Length of alternate bases must equal length of refence bases.
229568773	229568774	CC	CC	A
Mutation coordinate error (line 40679): Length of alternate bases must equal length of refence bases.
107743501	107743502	AG	AG	T
Mutation coordinate error (line 40716): Length of alternate bases must equal length of refence bases.
4736450	4736451	CC	CC	A
Mutation coordinate error (line 40937): Length of alternate bases must equal length of refence bases.
140682556	140682557	TC	TC	A
Mutation coordinate error (line 41074): Length of alternate bases must equal length of refence bases.
74351706	74351707	GA	GA	T
Mutation coordinate error (line 41109): Length of alternate bases must equal length of refence bases.
100732771	100732772	CC	CC	A
Mutation coordinate error (line 41208): Length of alternate bases must equal length of refence bases.
64172297	64172298	CG	CG	T
Mutation coordinate error (line 41252): Length of alternate bases must equal length of refence bases.
61512895	61512896	GG	GG	A
Mutation coordinate error (line 41440): Length of alternate bases must equal length of refence bases.
23728456	23728457	GG	GG	T
Mutation coordinate error (line 41622): Length of alternate bases must equal length of refence bases.
104433333	104433334	GA	GA	A
Mutation coordinate error (line 41642): Length of alternate bases must equal length of refence bases.
20799885	20799886	GT	GT	T
Mutation coordinate error (line 41791): Length of alternate bases must equal length of refence bases.
71282411	71282412	TG	TG	C
Mutation coordinate error (line 41819): Length of alternate bases must equal length of refence bases.
54610287	54610288	CC	CC	A
Mutation coordinate error (line 41844): Length of alternate bases must equal length of refence bases.
215848158	215848159	CC	CC	A
Mutation coordinate error (line 41911): Length of alternate bases must equal length of refence bases.
77305543	77305544	CC	CC	A
Mutation coordinate error (line 41926): Length of alternate bases must equal length of refence bases.
26915968	26915969	CC	CC	A
Mutation coordinate error (line 41940): Length of alternate bases must equal length of refence bases.
24145808	24145809	CC	CC	A
Mutation coordinate error (line 41959): Length of alternate bases must equal length of refence bases.
48349667	48349668	CC	CC	G
Mutation coordinate error (line 41980): Length of alternate bases must equal length of refence bases.
7214090	7214091	CC	CC	A
Mutation coordinate error (line 42001): Length of alternate bases must equal length of refence bases.
57958547	57958548	GG	GG	T
Mutation coordinate error (line 42016): Length of alternate bases must equal length of refence bases.
54379542	54379543	GC	GC	A
Mutation coordinate error (line 42033): Length of alternate bases must equal length of refence bases.
23866269	23866270	CC	CC	A
Mutation coordinate error (line 42041): Length of alternate bases must equal length of refence bases.
28501024	28501025	CT	CT	T
Mutation coordinate error (line 42047): Length of alternate bases must equal length of refence bases.
71184338	71184339	CC	CC	A
Mutation coordinate error (line 42086): Length of alternate bases must equal length of refence bases.
56424006	56424007	CC	CC	A
Mutation coordinate error (line 42089): Length of alternate bases must equal length of refence bases.
57328312	57328313	CC	CC	A
Mutation coordinate error (line 42110): Length of alternate bases must equal length of refence bases.
135430658	135430659	GG	GG	T
Mutation coordinate error (line 42499): Length of alternate bases must equal length of refence bases.
155102386	155102387	GG	GG	T
Mutation coordinate error (line 42613): Length of alternate bases must equal length of refence bases.
69100194	69100195	GG	GG	A
Mutation coordinate error (line 42644): Length of alternate bases must equal length of refence bases.
7727363	7727364	CG	CG	A
Mutation coordinate error (line 42786): Length of alternate bases must equal length of refence bases.
92760988	92760989	GG	GG	A
Mutation coordinate error (line 42948): Length of alternate bases must equal length of refence bases.
55873189	55873190	CC	CC	T
Mutation coordinate error (line 43002): Length of alternate bases must equal length of refence bases.
5756892	5756893	CC	CC	A
Mutation coordinate error (line 43290): Length of alternate bases must equal length of refence bases.
49675295	49675296	CC	CC	T
Mutation coordinate error (line 43297): Length of alternate bases must equal length of refence bases.
55671358	55671359	TG	TG	C
Mutation coordinate error (line 43463): Length of alternate bases must equal length of refence bases.
152576119	152576120	CT	CT	A
Mutation coordinate error (line 43630): Length of alternate bases must equal length of refence bases.
248525048	248525049	CC	CC	A
Mutation coordinate error (line 43772): Length of alternate bases must equal length of refence bases.
51907739	51907740	GG	GG	C
Mutation coordinate error (line 43856): Length of alternate bases must equal length of refence bases.
49628312	49628313	CG	CG	T
Mutation coordinate error (line 44110): Length of alternate bases must equal length of refence bases.
133692622	133692623	CC	CC	A
Mutation coordinate error (line 44180): Length of alternate bases must equal length of refence bases.
111099172	111099173	GG	GG	T
Mutation coordinate error (line 44193): Length of alternate bases must equal length of refence bases.
26026288	26026289	GG	GG	T
Mutation coordinate error (line 44280): Length of alternate bases must equal length of refence bases.
101185427	101185428	GG	GG	T
Mutation coordinate error (line 44284): Length of alternate bases must equal length of refence bases.
179497021	179497022	GG	GG	T
Mutation coordinate error (line 44335): Length of alternate bases must equal length of refence bases.
115336143	115336144	CC	CC	A
Mutation coordinate error (line 44369): Length of alternate bases must equal length of refence bases.
139790639	139790640	CC	CC	G
Mutation coordinate error (line 44400): Length of alternate bases must equal length of refence bases.
57982498	57982499	GC	GC	C
Mutation coordinate error (line 44441): Length of alternate bases must equal length of refence bases.
20296217	20296218	GG	GG	T
Mutation coordinate error (line 44477): Length of alternate bases must equal length of refence bases.
72349680	72349681	CA	CA	A
Mutation coordinate error (line 44586): Length of alternate bases must equal length of refence bases.
55981484	55981485	GA	GA	T
Mutation coordinate error (line 44599): Length of alternate bases must equal length of refence bases.
41181632	41181633	TG	TG	A
Mutation coordinate error (line 44877): Length of alternate bases must equal length of refence bases.
98943719	98943720	GC	GC	A
Mutation coordinate error (line 45030): Length of alternate bases must equal length of refence bases.
72419209	72419210	TG	TG	G
Mutation coordinate error (line 45131): Length of alternate bases must equal length of refence bases.
53085745	53085746	TC	TC	C
Mutation coordinate error (line 45189): Length of alternate bases must equal length of refence bases.
49519409	49519410	GC	GC	A
Mutation coordinate error (line 45665): Length of alternate bases must equal length of refence bases.
70612518	70612519	GG	GG	T
Mutation coordinate error (line 45718): Length of alternate bases must equal length of refence bases.
113514756	113514757	AG	AG	C
Mutation coordinate error (line 45776): Length of alternate bases must equal length of refence bases.
17157571	17157572	CG	CG	G
Mutation coordinate error (line 45869): Length of alternate bases must equal length of refence bases.
102632595	102632596	GG	GG	C
Mutation coordinate error (line 45943): Length of alternate bases must equal length of refence bases.
13911575	13911576	CC	CC	A
Mutation coordinate error (line 45947): Length of alternate bases must equal length of refence bases.
79029057	79029058	GG	GG	C
Mutation coordinate error (line 45951): Length of alternate bases must equal length of refence bases.
140167301	140167302	AC	AC	T
Mutation coordinate error (line 46050): Length of alternate bases must equal length of refence bases.
24921095	24921096	CC	CC	A
Mutation coordinate error (line 46548): Length of alternate bases must equal length of refence bases.
42877103	42877104	GG	GG	T
Mutation coordinate error (line 46551): Length of alternate bases must equal length of refence bases.
99948125	99948126	GC	GC	T
Mutation coordinate error (line 46908): Length of alternate bases must equal length of refence bases.
24505300	24505301	AT	AT	C
Mutation coordinate error (line 47076): Length of alternate bases must equal length of refence bases.
69299393	69299394	TG	TG	C
Mutation coordinate error (line 47086): Length of alternate bases must equal length of refence bases.
118352021	118352022	GG	GG	A
Mutation coordinate error (line 47341): Length of alternate bases must equal length of refence bases.
18300884	18300885	CC	CC	A

Error in maflite format!  The faulty lines displayed above will not be included in output.
Ignoring the mutations listed above.
Analyzing clustered mutations
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

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convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
WARNING: unknown chromosome(s):
    'chr6_dbb_hap3'

WARNING: unknown chromosome(s):
    'chr6_dbb_hap3'

1000/13232 convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
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1100/13232 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
1200/13232 1300/13232 1400/13232 1500/13232 1600/13232 WARNING: unknown chromosome(s):
    'chr6_qbl_hap6'

WARNING: unknown chromosome(s):
    'chr6_qbl_hap6'

WARNING: unknown chromosome(s):
    'chr6_mann_hap4'

WARNING: unknown chromosome(s):
    'chr6_mann_hap4'

WARNING: unknown chromosome(s):
    'chr6_mann_hap4'

1700/13232 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
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1800/13232 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
1900/13232 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
2000/13232 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
2100/13232 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
2200/13232 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
2300/13232 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
2400/13232 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
2500/13232 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
2600/13232 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
2700/13232 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
WARNING: unknown chromosome(s):
    'chr17_ctg5_hap1'

WARNING: unknown chromosome(s):
    'chr17_ctg5_hap1'

WARNING: unknown chromosome(s):
    'chr17_ctg5_hap1'

convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
<CSMD3 muts: 100/113 /> 2800/13232 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
2900/13232 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

3000/13232 convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
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3100/13232 convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
4800/13232 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
4900/13232 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
5000/13232 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
5100/13232 WARNING: unknown chromosome(s):
    'chr6_dbb_hap3'

WARNING: unknown chromosome(s):
    'chr6_dbb_hap3'

WARNING: unknown chromosome(s):
    'chr6_dbb_hap3'

WARNING: unknown chromosome(s):
    'chr6_dbb_hap3'

WARNING: unknown chromosome(s):
    'chr6_dbb_hap3'

WARNING: unknown chromosome(s):
    'chr6_dbb_hap3'

WARNING: unknown chromosome(s):
    'chr6_dbb_hap3'

convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
5200/13232 WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
5300/13232 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
5400/13232 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
5500/13232 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
5600/13232 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
5700/13232 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
5800/13232 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
WARNING: unknown chromosome(s):
    'chr17_ctg5_hap1'

WARNING: unknown chromosome(s):
    'chr17_ctg5_hap1'

WARNING: unknown chromosome(s):
    'chr17_ctg5_hap1'

WARNING: unknown chromosome(s):
    'chr17_ctg5_hap1'

5900/13232 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
6000/13232 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
6100/13232 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
6200/13232 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
6300/13232 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
6400/13232 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
<LRP1B muts: 100/103 /> 6500/13232 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
6600/13232 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
6700/13232 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
6800/13232 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
6900/13232 WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
7000/13232 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
7100/13232 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
<MUC16 muts: 100/133 /> convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
7200/13232 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
7300/13232 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
WARNING: trimming <start> to <filesize>
WARNING: trimming <end> to <filesize>
WARNING: trimming <start> to <filesize>
WARNING: trimming <end> to <filesize>
WARNING: trimming <start> to <filesize>
WARNING: trimming <end> to <filesize>
7400/13232 WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
7500/13232 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

7600/13232 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
7700/13232 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
7800/13232 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
WARNING: unknown chromosome(s):
    'chr6_apd_hap1'

WARNING: unknown chromosome(s):
    'chr6_apd_hap1'

WARNING: unknown chromosome(s):
    'chr6_apd_hap1'

WARNING: unknown chromosome(s):
    'chr6_apd_hap1'

WARNING: unknown chromosome(s):
    'chr6_dbb_hap3'

WARNING: unknown chromosome(s):
    'chr6_dbb_hap3'

WARNING: unknown chromosome(s):
    'chr6_dbb_hap3'

WARNING: unknown chromosome(s):
    'chr6_dbb_hap3'

7900/13232 WARNING: unknown chromosome(s):
    'chr6_mcf_hap5'

WARNING: unknown chromosome(s):
    'chr6_mcf_hap5'

WARNING: unknown chromosome(s):
    'chr6_mcf_hap5'

WARNING: unknown chromosome(s):
    'chr6_mcf_hap5'

WARNING: unknown chromosome(s):
    'chr6_mcf_hap5'

WARNING: unknown chromosome(s):
    'chr6_mcf_hap5'

8000/13232 8100/13232 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
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8400/13232 convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
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8500/13232 convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
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8600/13232 convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
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8700/13232 8800/13232 convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
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8900/13232 convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
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9000/13232 convert_chr: assuming human for chrX/chrY
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9100/13232 convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
9200/13232 WARNING: unknown chromosome(s):
    'chr6_ssto_hap7'

WARNING: unknown chromosome(s):
    'chr6_ssto_hap7'

convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
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9300/13232 convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
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9400/13232 convert_chr: assuming human for chrX/chrY
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9500/13232 convert_chr: assuming human for chrX/chrY
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9600/13232 convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
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9800/13232 convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
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9900/13232 <RYR2 muts: 100/108 /> convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
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10000/13232 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
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10100/13232 convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
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10200/13232 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
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10300/13232 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
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10400/13232 10500/13232 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
WARNING: unknown chromosome(s):
    'chr6_qbl_hap6'

WARNING: unknown chromosome(s):
    'chr6_qbl_hap6'

10600/13232 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
10700/13232 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
10800/13232 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
10900/13232 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
11000/13232 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
11100/13232 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
11200/13232 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
WARNING: unknown chromosome(s):
    'chr6_dbb_hap3'

WARNING: unknown chromosome(s):
    'chr6_dbb_hap3'

WARNING: unknown chromosome(s):
    'chr6_dbb_hap3'

WARNING: unknown chromosome(s):
    'chr6_dbb_hap3'

convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
11300/13232 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
11400/13232 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
11500/13232 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
11600/13232 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
11700/13232 11800/13232 <TP53 muts: 100/141 /> 11900/13232 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
12000/13232 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
<TTN muts: 100/330 200/330 300/330 /> 12100/13232 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
12200/13232 WARNING: unknown chromosome(s):
    'chr4_ctg9_hap1'

WARNING: unknown chromosome(s):
    'chr4_ctg9_hap1'

WARNING: unknown chromosome(s):
    'chr4_ctg9_hap1'

convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
12300/13232 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
WARNING: unknown chromosome(s):
    'chr6_apd_hap1'

WARNING: unknown chromosome(s):
    'chr6_apd_hap1'

WARNING: unknown chromosome(s):
    'chr6_apd_hap1'

convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
12400/13232 convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
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12600/13232 WARNING: unknown chromosome(s):
    'chr6_qbl_hap6'

WARNING: unknown chromosome(s):
    'chr6_qbl_hap6'

convert_chr: assuming human for chrX/chrY
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12700/13232 convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

WARNING: unknown chromosome(s):
    'chr6_cox_hap2'

convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
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12800/13232 convert_chr: assuming human for chrX/chrY
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13000/13232 convert_chr: assuming human for chrX/chrY
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13100/13232 convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
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13200/13232 convert_chr: assuming human for chrX/chrY
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convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY

Truncating list of significant genes after the first 100 genes
Analyzing gene-gene correlations and anti-correlations
Performing permutations:
1.05	10/1000000	0.11	0.105	9.5	4783/4950 pairs	14/100 genes done
2.33	58/1000000	0.04	0.027	37.7	4869/4950 pairs	33/100 genes done
4.32	244/1000000	0.02	0.011	93.6	4934/4950 pairs	76/100 genes done
5.95	712/1000000	0.01	0.003	286.8	4944/4950 pairs	91/100 genes done
7.45	1784/1000000	0.00	0.001	714.8	4950/4950 pairs	100/100 genes done

Top gene-gene pairs:
SI	REG1B	0.002241	0.880299	correlated
SPHKAP	SLC17A8	0.002315	0.880299	correlated
REG1A	TRHDE	0.002861	0.880299	correlated
CLVS2	SLC17A8	0.004505	0.880299	correlated
IFNA10	CCDC85A	0.005181	0.880299	correlated
TRHDE	SLC17A8	0.005495	0.880299	correlated
RNF144A	CLSTN2	0.006557	0.880299	correlated
OR5L2	KIRREL2	0.006667	0.880299	correlated
OR5M9	GP2	0.006885	0.880299	correlated
REG3G	ZFP42	0.007692	0.880299	correlated
LRRC4C	OR5M9	0.009238	0.880299	correlated
CYP11B1	KCND2	0.009259	0.880299	correlated
REG3A	SLC17A8	0.013201	0.880299	correlated
PNLIPRP3	ZFP42	0.013333	0.880299	correlated
SPHKAP	ASCL4	0.013559	0.880299	correlated
SI	OR10A4	0.014085	0.880299	correlated
PIK3CA	REG1A	0.016736	0.880299	correlated
TPTE	GBA3	0.017167	0.880299	correlated
LIN37	KIRREL2	0.017857	0.880299	correlated
LRRC4C	CYP11B1	0.018519	0.880299	correlated
TPTE	SLC17A8	0.019324	0.880299	correlated
OR2G6	GPC5	0.019324	0.880299	correlated
KCND2	PSG2	0.019900	0.880299	correlated
C20orf26	ZNF80	0.021277	0.880299	correlated
KRTAP5-5	PRIM2	0.021978	0.880299	correlated
TRHDE	OR8K5	0.022099	0.880299	correlated
ZBBX	REG3G	0.022222	0.880299	correlated
CYP11B1	OR51B2	0.022989	0.880299	correlated
FAM5C	CYP11B1	0.023669	0.880299	correlated
OR2T33	GBA3	0.024540	0.880299	correlated
FAM5C	ELTD1	0.025641	0.880299	correlated
PIK3CA	SLC17A8	0.026144	0.880299	correlated
OR6F1	GP2	0.026144	0.880299	correlated
MAGEB2	OR2A5	0.026490	0.880299	correlated
HS6ST1	RNF144A	0.026490	0.880299	correlated
OR2G6	GP2	0.026667	0.880299	correlated
DPPA4	OR6F1	0.027397	0.880299	correlated
TPTE	SPHKAP	0.028369	0.880299	correlated
TRIM58	USP29	0.029412	0.880299	correlated
ELTD1	ESRRG	0.031250	0.880299	correlated
PDYN	PNLIPRP3	0.031496	0.880299	correlated
ASB5	REG1A	0.033333	0.880299	correlated
LRRC4C	CLSTN2	0.033613	0.880299	correlated
OR2G6	MS4A14	0.033613	0.880299	correlated
KRTAP5-5	SPANXN1	0.033613	0.880299	correlated
FAM5C	OR10A4	0.034783	0.880299	correlated
LRRC4C	SLC17A8	0.035088	0.880299	correlated
POTEG	PRR23B	0.035714	0.880299	correlated
GBA3	SLC17A8	0.036697	0.880299	correlated
PRR23B	CCDC85A	0.037383	0.880299	correlated
CPS1	SPHKAP	0.037736	0.880299	correlated
LRRC4C	GP2	0.038095	0.880299	correlated
ASCL4	TEX13A	0.038462	0.880299	correlated
DPPA4	REG3G	0.038835	0.880299	correlated
TRAT1	KCND2	0.038835	0.880299	correlated
SI	OR2G6	0.040816	0.880299	correlated
OR6F1	REG3G	0.040816	0.880299	correlated
OR51B2	SPANXN1	0.041667	0.880299	correlated
UXS1	CLVS2	0.041667	0.880299	correlated
SI	PDYN	0.042553	0.880299	correlated
Analyzing power per gene...
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 {Warning: The KEYBOARD function cannot be used in compiled applications.} 
> In keyboard at 4
  In single_screen_power_smooth at 26
  In calculate_power_per_gene at 63
  In analyze_mutation_data at 247
  In mutsig_analysis at 16
  In mutsig_analysis_and_report at 3
  In fh_MutSigRun at 111
ERROR in single_screen_power_smooth for gene TTN:
Improper assignment with rectangular empty matrix.
{Warning: The KEYBOARD function cannot be used in compiled applications.} 
> In keyboard at 4
  In single_screen_power_smooth at 26
  In calculate_power_per_gene at 63
  In analyze_mutation_data at 247
  In mutsig_analysis at 16
  In mutsig_analysis_and_report at 3
  In fh_MutSigRun at 111
ERROR in single_screen_power_smooth for gene TTN:
Improper assignment with rectangular empty matrix.
{Warning: The KEYBOARD function cannot be used in compiled applications.} 
> In keyboard at 4
  In single_screen_power_smooth at 26
  In calculate_power_per_gene at 63
  In analyze_mutation_data at 247
  In mutsig_analysis at 16
  In mutsig_analysis_and_report at 3
  In fh_MutSigRun at 111
ERROR in single_screen_power_smooth for gene TTN:
Improper assignment with rectangular empty matrix.
{Warning: The KEYBOARD function cannot be used in compiled applications.} 
> In keyboard at 4
  In single_screen_power_smooth at 26
  In calculate_power_per_gene at 63
  In analyze_mutation_data at 247
  In mutsig_analysis at 16
  In mutsig_analysis_and_report at 3
  In fh_MutSigRun at 111
ERROR in single_screen_power_smooth for gene TTN:
Improper assignment with rectangular empty matrix.
{Warning: The KEYBOARD function cannot be used in compiled applications.} 
> In keyboard at 4
  In single_screen_power_smooth at 26
  In calculate_power_per_gene at 63
  In analyze_mutation_data at 247
  In mutsig_analysis at 16
  In mutsig_analysis_and_report at 3
  In fh_MutSigRun at 111
ERROR in single_screen_power_smooth for gene TTN:
Improper assignment with rectangular empty matrix.
17000/18094 18000/18094 
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 {Warning: The KEYBOARD function cannot be used in compiled applications.} 
> In keyboard at 4
  In single_screen_power_smooth at 26
  In calculate_power_per_gene at 63
  In analyze_mutation_data at 247
  In mutsig_analysis at 16
  In mutsig_analysis_and_report at 3
  In fh_MutSigRun at 111
ERROR in single_screen_power_smooth for gene TTN:
Improper assignment with rectangular empty matrix.
{Warning: The KEYBOARD function cannot be used in compiled applications.} 
> In keyboard at 4
  In single_screen_power_smooth at 26
  In calculate_power_per_gene at 63
  In analyze_mutation_data at 247
  In mutsig_analysis at 16
  In mutsig_analysis_and_report at 3
  In fh_MutSigRun at 111
ERROR in single_screen_power_smooth for gene TTN:
Improper assignment with rectangular empty matrix.
{Warning: The KEYBOARD function cannot be used in compiled applications.} 
> In keyboard at 4
  In single_screen_power_smooth at 26
  In calculate_power_per_gene at 63
  In analyze_mutation_data at 247
  In mutsig_analysis at 16
  In mutsig_analysis_and_report at 3
  In fh_MutSigRun at 111
ERROR in single_screen_power_smooth for gene TTN:
Improper assignment with rectangular empty matrix.
{Warning: The KEYBOARD function cannot be used in compiled applications.} 
> In keyboard at 4
  In single_screen_power_smooth at 26
  In calculate_power_per_gene at 63
  In analyze_mutation_data at 247
  In mutsig_analysis at 16
  In mutsig_analysis_and_report at 3
  In fh_MutSigRun at 111
ERROR in single_screen_power_smooth for gene TTN:
Improper assignment with rectangular empty matrix.
{Warning: The KEYBOARD function cannot be used in compiled applications.} 
> In keyboard at 4
  In single_screen_power_smooth at 26
  In calculate_power_per_gene at 63
  In analyze_mutation_data at 247
  In mutsig_analysis at 16
  In mutsig_analysis_and_report at 3
  In fh_MutSigRun at 111
ERROR in single_screen_power_smooth for gene TTN:
Improper assignment with rectangular empty matrix.
17000/18094 18000/18094 
Generating gene coverage plots...
Superimposing mutations
Outputting figure to ./LUSC.gene_coverage_plots/1.png
Superimposing mutations
Outputting figure to ./LUSC.gene_coverage_plots/2.png
Superimposing mutations
Outputting figure to ./LUSC.gene_coverage_plots/3.png
Superimposing mutations
Outputting figure to ./LUSC.gene_coverage_plots/4.png
Superimposing mutations
Outputting figure to ./LUSC.gene_coverage_plots/5.png
Superimposing mutations
Outputting figure to ./LUSC.gene_coverage_plots/6.png
Superimposing mutations
Outputting figure to ./LUSC.gene_coverage_plots/7.png
Superimposing mutations
Outputting figure to ./LUSC.gene_coverage_plots/8.png
Superimposing mutations
Outputting figure to ./LUSC.gene_coverage_plots/9.png
Superimposing mutations
Outputting figure to ./LUSC.gene_coverage_plots/10.png
Superimposing mutations
Outputting figure to ./LUSC.gene_coverage_plots/11.png
Superimposing mutations
Outputting figure to ./LUSC.gene_coverage_plots/12.png
Superimposing mutations
Outputting figure to ./LUSC.gene_coverage_plots/13.png
Superimposing mutations
Outputting figure to ./LUSC.gene_coverage_plots/14.png
Superimposing mutations
Outputting figure to ./LUSC.gene_coverage_plots/15.png
Superimposing mutations
Outputting figure to ./LUSC.gene_coverage_plots/16.png
Superimposing mutations
Outputting figure to ./LUSC.gene_coverage_plots/17.png
Superimposing mutations
Outputting figure to ./LUSC.gene_coverage_plots/18.png
Superimposing mutations
Outputting figure to ./LUSC.gene_coverage_plots/19.png
Superimposing mutations
Outputting figure to ./LUSC.gene_coverage_plots/20.png
Superimposing mutations
Outputting figure to ./LUSC.gene_coverage_plots/21.png
Superimposing mutations
Outputting figure to ./LUSC.gene_coverage_plots/22.png
Superimposing mutations
Outputting figure to ./LUSC.gene_coverage_plots/23.png
Superimposing mutations
Outputting figure to ./LUSC.gene_coverage_plots/24.png
Superimposing mutations
Outputting figure to ./LUSC.gene_coverage_plots/25.png
Superimposing mutations
Outputting figure to ./LUSC.gene_coverage_plots/26.png
Superimposing mutations
Outputting figure to ./LUSC.gene_coverage_plots/27.png
Superimposing mutations
Outputting figure to ./LUSC.gene_coverage_plots/28.png
Superimposing mutations
Outputting figure to ./LUSC.gene_coverage_plots/29.png
Superimposing mutations
Outputting figure to ./LUSC.gene_coverage_plots/30.png
Superimposing mutations
Outputting figure to ./LUSC.gene_coverage_plots/31.png
Superimposing mutations
Outputting figure to ./LUSC.gene_coverage_plots/32.png
Superimposing mutations
Outputting figure to ./LUSC.gene_coverage_plots/33.png
Superimposing mutations
Outputting figure to ./LUSC.gene_coverage_plots/34.png
Superimposing mutations
Outputting figure to ./LUSC.gene_coverage_plots/35.png
Superimposing mutations
Outputting figure to ./LUSC.gene_coverage_plots/36.png
Superimposing mutations
Outputting figure to ./LUSC.gene_coverage_plots/37.png
Superimposing mutations
Outputting figure to ./LUSC.gene_coverage_plots/38.png
Superimposing mutations
Outputting figure to ./LUSC.gene_coverage_plots/39.png
Superimposing mutations
Outputting figure to ./LUSC.gene_coverage_plots/40.png
Superimposing mutations
Outputting figure to ./LUSC.gene_coverage_plots/41.png
Superimposing mutations
Outputting figure to ./LUSC.gene_coverage_plots/42.png
Superimposing mutations
Outputting figure to ./LUSC.gene_coverage_plots/43.png
Superimposing mutations
Outputting figure to ./LUSC.gene_coverage_plots/44.png
Superimposing mutations
Outputting figure to ./LUSC.gene_coverage_plots/45.png
Superimposing mutations
Outputting figure to ./LUSC.gene_coverage_plots/46.png
Superimposing mutations
Outputting figure to ./LUSC.gene_coverage_plots/47.png
Superimposing mutations
Outputting figure to ./LUSC.gene_coverage_plots/48.png
Superimposing mutations
Outputting figure to ./LUSC.gene_coverage_plots/49.png
Superimposing mutations
Outputting figure to ./LUSC.gene_coverage_plots/50.png
generate_gene_coverage_plots finished
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 0 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200
*** Prepare stdandard out:
cat: prepare.out: No such file or directory
*** Prepare stdandard err:
cat: prepare.err: No such file or directory
*** Scatter stdandard out:
Sender: LSF System <lsf@node1545>
Subject: Job 8003773: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1545>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000001> was used as the working directory.
Started at Sun Nov 11 15:03:00 2012
Results reported at Sun Nov 11 15:13:27 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000001.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000001.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 1  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000001.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    783.55 sec.
    Max Memory :      4703 MB
    Max Swap   :      7038 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
1
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 1
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 1: processing genes 1 - 90
Calculating significance of each gene.
Using projection method.
1	A1BG	6.418924e-01
2	A1CF	2.728433e-01
3	A2BP1	1
4	A2M	9.905047e-01
5	A2ML1	1
6	A4GALT	1
7	A4GNT	4.318445e-03
8	AAAS	8.387027e-01
9	AACS	8.725348e-01
10	AADAC	1.906654e-01
11	AADACL2	1.573949e-02
12	AADACL3	6.124629e-01
13	AADACL4	4.116682e-01
14	AADAT	7.838799e-01
15	AAGAB	6.018806e-01
16	AAK1	8.704353e-01
17	AAMP	1
18	AANAT	1
19	AARS	9.116604e-01
20	AARS2	4.832009e-01
21	AARSD1	3.034326e-01
22	AASDH	9.414847e-01
23	AASDHPPT	4.497286e-01
24	AASS	4.423451e-01
25	AATF	8.165645e-01
26	AATK	1.987463e-01
27	ABAT	2.529999e-01
28	ABCA1	9.914069e-01
29	ABCA10	9.965306e-01
30	ABCA12	9.999136e-01
31	ABCA13	9.998687e-01
32	ABCA2	9.728624e-01
33	ABCA3	9.973453e-01
34	ABCA4	9.998325e-01
35	ABCA5	8.771144e-01
36	ABCA6	4.424352e-01
37	ABCA7	9.993255e-01
38	ABCA8	6.733725e-01
39	ABCA9	3.623282e-01
40	ABCB1	5.357639e-03
41	ABCB10	3.683902e-01
42	ABCB11	4.089488e-01
43	ABCB4	1
44	ABCB5	1.555946e-01
45	ABCB6	5.885279e-01
46	ABCB7	8.303533e-01
47	ABCB8	9.593400e-01
48	ABCB9	4.123159e-01
49	ABCC1	1
50	ABCC10	9.974960e-01
51	ABCC11	9.918248e-01
52	ABCC12	2.336480e-03
53	ABCC2	6.864364e-01
54	ABCC3	9.198711e-01
55	ABCC4	9.900790e-01
56	ABCC5	9.409279e-01
57	ABCC6	1
58	ABCC8	9.828241e-01
59	ABCC9	8.821824e-01
60	ABCD1	4.810548e-01
61	ABCD2	9.461414e-04
62	ABCD3	1
63	ABCD4	8.699366e-01
64	ABCE1	7.821959e-01
65	ABCF1	8.476140e-01
66	ABCF2	3.988907e-01
67	ABCF3	2.570298e-01
68	ABCG1	9.175086e-01
69	ABCG2	6.494622e-01
70	ABCG4	1
71	ABCG5	6.951703e-01
72	ABCG8	6.658962e-02
73	ABHD1	1
74	ABHD10	4.961091e-02
75	ABHD11	1
76	ABHD12	1
77	ABHD12B	1
78	ABHD13	2.914318e-01
79	ABHD14A	1
80	ABHD14B	1
81	ABHD15	1
82	ABHD2	1
83	ABHD3	6.307584e-01
84	ABHD4	5.196605e-01
85	ABHD5	5.696947e-01
86	ABHD6	5.731569e-01
87	ABHD8	1
88	ABI1	2.931053e-01
89	ABI2	1
90	ABI3	1
Done

Running MutSig 2:
Scatter job 1: processing genes 1 - 90
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ABCA13
Processing conservation and coverage...
65% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.119136e-02	ci left: 9.193534e-01	ci right 9.297976e-01	k: 9247	n:10000
Cons ci ratio: 4.944042e-02	ci left: 3.763431e-01	ci right 3.955234e-01	k: 3859	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
ABCA13   10000 perm   6 sec   (1767 perm/sec)   p_kst 1   p_cons 3.859000e-01   p_joint 9.247000e-01

Outputting figure to mutsig2_images.part000000000001/ABCA13.33_15254_10000_1_0.3859_0.9247.png
                gene_name: ABCA13
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 2 percent done.
ABCB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.646737e-02	ci left: 3.159213e-01	ci right 3.343806e-01	k: 3251	n:10000
Cons ci ratio: 7.435137e-02	ci left: 2.093488e-01	ci right 2.256161e-01	k: 2174	n:10000
KS ci ratio: 6.151475e-02	ci left: 2.798308e-01	ci right 2.976924e-01	k: 2887	n:10000
ABCB1   10000 perm   3 sec   (3720 perm/sec)   p_kst 2.887000e-01   p_cons 2.174000e-01   p_joint 3.251000e-01

Outputting figure to mutsig2_images.part000000000001/ABCB1.17_3951_10000_0.2887_0.2174_0.3251.png
                gene_name: ABCB1
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 4 percent done.
ABCC12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.871987e-02	ci left: 2.369909e-01	ci right 2.539576e-01	k: 2454	n:10000
Cons ci ratio: 1.435388e-01	ci left: 6.439839e-02	ci right 7.445420e-02	k: 693	n:10000
KS ci ratio: 3.026420e-02	ci left: 6.169333e-01	ci right 6.359930e-01	k: 6265	n:10000
ABCC12   10000 perm   3 sec   (3868 perm/sec)   p_kst 6.265000e-01   p_cons 6.930000e-02   p_joint 2.454000e-01

Joint ci ratio: 5.350342e-02	ci left: 2.059071e-01	ci right 2.172769e-01	k: 4231	n:20000
Cons ci ratio: 1.004535e-01	ci left: 6.718520e-02	ci right 7.434020e-02	k: 1414	n:20000
KS ci ratio: 2.123447e-02	ci left: 6.234158e-01	ci right 6.368463e-01	k: 12603	n:20000
ABCC12   20000 perm   6 sec   (3527 perm/sec)   p_kst 6.301500e-01   p_cons 7.070000e-02   p_joint 2.115500e-01

Joint ci ratio: 4.777179e-02	ci left: 1.789029e-01	ci right 1.876919e-01	k: 5498	n:30000
Cons ci ratio: 8.163826e-02	ci left: 6.844579e-02	ci right 7.430421e-02	k: 2140	n:30000
KS ci ratio: 1.742441e-02	ci left: 6.223346e-01	ci right 6.333073e-01	k: 18835	n:30000
ABCC12   30000 perm   9 sec   (3409 perm/sec)   p_kst 6.278333e-01   p_cons 7.133333e-02   p_joint 1.832667e-01

Outputting figure to mutsig2_images.part000000000001/ABCC12.15_4196_30000_0.62783_0.071333_0.18327.png
                gene_name: ABCC12
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.071 
      ci_cons_bounds_left: 0.068 
     ci_cons_bounds_right: 0.074 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 5 percent done.
ABCB5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.316938e-02	ci left: 5.729622e-01	ci right 5.923896e-01	k: 5827	n:10000
Cons ci ratio: 6.059909e-02	ci left: 2.859734e-01	ci right 3.039462e-01	k: 2949	n:10000
KS ci ratio: 3.436366e-02	ci left: 5.556165e-01	ci right 5.751454e-01	k: 5654	n:10000
ABCB5   10000 perm   3 sec   (3649 perm/sec)   p_kst 5.654000e-01   p_cons 2.949000e-01   p_joint 5.827000e-01

Outputting figure to mutsig2_images.part000000000001/ABCB5.14_3923_10000_0.5654_0.2949_0.5827.png
                gene_name: ABCB5
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 7 percent done.
ABCA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.453085e-02	ci left: 3.313090e-01	ci right 3.499839e-01	k: 3406	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
ABCA4   10000 perm   3 sec   (3284 perm/sec)   p_kst 1   p_cons 3.406000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000001/ABCA4.12_7022_10000_1_0.3406_1.png
                gene_name: ABCA4
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 9 percent done.
ABCA9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.473772e-02	ci left: 8.695851e-01	ci right 8.825950e-01	k: 8762	n:10000
Cons ci ratio: 4.357574e-02	ci left: 4.374215e-01	ci right 4.570092e-01	k: 4472	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
ABCA9   10000 perm   3 sec   (3793 perm/sec)   p_kst 1   p_cons 4.472000e-01   p_joint 8.762000e-01

Outputting figure to mutsig2_images.part000000000001/ABCA9.12_5027_10000_1_0.4472_0.8762.png
                gene_name: ABCA9
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 11 percent done.
ABCD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.176376e-02	ci left: 5.939338e-01	ci right 6.132058e-01	k: 6036	n:10000
Cons ci ratio: 6.429240e-02	ci left: 2.622072e-01	ci right 2.797264e-01	k: 2709	n:10000
KS ci ratio: 1.536256e-02	ci left: 8.600854e-01	ci right 8.735001e-01	k: 8669	n:10000
ABCD2   10000 perm   2 sec   (4869 perm/sec)   p_kst 8.669000e-01   p_cons 2.709000e-01   p_joint 6.036000e-01

Outputting figure to mutsig2_images.part000000000001/ABCD2.12_2263_10000_0.8669_0.2709_0.6036.png
                gene_name: ABCD2
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 12 percent done.
AASS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.034830e-02	ci left: 6.156270e-01	ci right 6.347000e-01	k: 6252	n:10000
Cons ci ratio: 2.685829e-02	ci left: 6.712594e-01	ci right 6.896353e-01	k: 6805	n:10000
KS ci ratio: 5.017843e-02	ci left: 3.693784e-01	ci right 3.884922e-01	k: 3789	n:10000
AASS   10000 perm   2 sec   (4631 perm/sec)   p_kst 3.789000e-01   p_cons 6.805000e-01   p_joint 6.252000e-01

Outputting figure to mutsig2_images.part000000000001/AASS.11_2873_10000_0.3789_0.6805_0.6252.png
                gene_name: AASS
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.63 

Current progress: 14 percent done.
ABCC9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.597175e-02	ci left: 5.329749e-01	ci right 5.526002e-01	k: 5428	n:10000
Cons ci ratio: 7.707555e-02	ci left: 1.975185e-01	ci right 2.134534e-01	k: 2054	n:10000
KS ci ratio: 1.541574e-02	ci left: 8.592688e-01	ci right 8.727172e-01	k: 8661	n:10000
ABCC9   10000 perm   3 sec   (3774 perm/sec)   p_kst 8.661000e-01   p_cons 2.054000e-01   p_joint 5.428000e-01

Outputting figure to mutsig2_images.part000000000001/ABCC9.10_4944_10000_0.8661_0.2054_0.5428.png
                gene_name: ABCC9
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 16 percent done.
ABCA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.149215e-02	ci left: 1.801871e-01	ci right 1.955952e-01	k: 1878	n:10000
Cons ci ratio: 3.075757e-02	ci left: 6.092978e-01	ci right 6.284329e-01	k: 6189	n:10000
KS ci ratio: 1.140181e-01	ci left: 9.964203e-02	ci right 1.117887e-01	k: 1056	n:10000
ABCA1   10000 perm   3 sec   (3236 perm/sec)   p_kst 1.056000e-01   p_cons 6.189000e-01   p_joint 1.878000e-01

Joint ci ratio: 4.238105e-02	ci left: 2.932062e-01	ci right 3.059521e-01	k: 5991	n:20000
Cons ci ratio: 2.201824e-02	ci left: 6.063090e-01	ci right 6.198581e-01	k: 12262	n:20000
KS ci ratio: 8.070988e-02	ci left: 1.012260e-01	ci right 1.097891e-01	k: 2109	n:20000
ABCA1   20000 perm   7 sec   (3015 perm/sec)   p_kst 1.054500e-01   p_cons 6.131000e-01   p_joint 2.995500e-01

Outputting figure to mutsig2_images.part000000000001/ABCA1.9_6982_20000_0.10545_0.6131_0.29955.png
                gene_name: ABCA1
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 18 percent done.
ABCA10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.002437e-02	ci left: 2.301744e-01	ci right 2.469782e-01	k: 2385	n:10000
Cons ci ratio: 1.152409e-01	ci left: 9.769325e-02	ci right 1.097387e-01	k: 1036	n:10000
KS ci ratio: 9.724413e-03	ci left: 9.373421e-01	ci right 9.465983e-01	k: 9421	n:10000
ABCA10   10000 perm   3 sec   (3904 perm/sec)   p_kst 9.421000e-01   p_cons 1.036000e-01   p_joint 2.385000e-01

Joint ci ratio: 3.707884e-02	ci left: 3.517999e-01	ci right 3.651412e-01	k: 7169	n:20000
Cons ci ratio: 8.070988e-02	ci left: 1.012260e-01	ci right 1.097891e-01	k: 2109	n:20000
KS ci ratio: 6.813920e-03	ci left: 9.397483e-01	ci right 9.462222e-01	k: 18861	n:20000
ABCA10   20000 perm   6 sec   (3565 perm/sec)   p_kst 9.430500e-01   p_cons 1.054500e-01   p_joint 3.584500e-01

Outputting figure to mutsig2_images.part000000000001/ABCA10.9_4780_20000_0.94305_0.10545_0.35845.png
                gene_name: ABCA10
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 19 percent done.
ABCA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.583820e-02	ci left: 8.527383e-01	ci right 8.664514e-01	k: 8597	n:10000
Cons ci ratio: 1.855977e-02	ci left: 8.091780e-01	ci right 8.244370e-01	k: 8169	n:10000
KS ci ratio: 2.024168e-02	ci left: 7.813762e-01	ci right 7.974549e-01	k: 7895	n:10000
ABCA2   10000 perm   3 sec   (3385 perm/sec)   p_kst 7.895000e-01   p_cons 8.169000e-01   p_joint 8.597000e-01

Outputting figure to mutsig2_images.part000000000001/ABCA2.9_7668_10000_0.7895_0.8169_0.8597.png
                gene_name: ABCA2
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 21 percent done.
ABCC10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.261923e-02	ci left: 4.483979e-01	ci right 4.680265e-01	k: 4582	n:10000
Cons ci ratio: 1.357978e-02	ci left: 8.866742e-01	ci right 8.988959e-01	k: 8929	n:10000
KS ci ratio: 5.465244e-02	ci left: 3.303159e-01	ci right 3.489775e-01	k: 3396	n:10000
ABCC10   10000 perm   2 sec   (4162 perm/sec)   p_kst 3.396000e-01   p_cons 8.929000e-01   p_joint 4.582000e-01

Outputting figure to mutsig2_images.part000000000001/ABCC10.9_4475_10000_0.3396_0.8929_0.4582.png
                gene_name: ABCC10
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 23 percent done.
ABCF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.037541e-02	ci left: 9.295765e-01	ci right 9.393685e-01	k: 9346	n:10000
Cons ci ratio: 1.362230e-02	ci left: 8.860594e-01	ci right 8.983110e-01	k: 8923	n:10000
KS ci ratio: 3.384225e-02	ci left: 5.631348e-01	ci right 5.826227e-01	k: 5729	n:10000
ABCF3   10000 perm   2 sec   (4501 perm/sec)   p_kst 5.729000e-01   p_cons 8.923000e-01   p_joint 9.346000e-01

Outputting figure to mutsig2_images.part000000000001/ABCF3.9_2214_10000_0.5729_0.8923_0.9346.png
                gene_name: ABCF3
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 25 percent done.
A2M
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.737120e-02	ci left: 5.139556e-01	ci right 5.336306e-01	k: 5238	n:10000
KS ci ratio: 1.532262e-02	ci left: 8.606980e-01	ci right 8.740872e-01	k: 8675	n:10000
A2M   10000 perm   2 sec   (4141 perm/sec)   p_kst 8.675000e-01   p_cons 5.238000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000001/A2M.8_4569_10000_0.8675_0.5238_1.png
                gene_name: A2M
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 26 percent done.
A2ML1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.232947e-02	ci left: 1.771369e-01	ci right 1.924471e-01	k: 1847	n:10000
Cons ci ratio: 9.607845e-02	ci left: 1.358015e-01	ci right 1.496073e-01	k: 1426	n:10000
KS ci ratio: 6.679098e-02	ci left: 2.475672e-01	ci right 2.647751e-01	k: 2561	n:10000
A2ML1   10000 perm   2 sec   (4180 perm/sec)   p_kst 2.561000e-01   p_cons 1.426000e-01   p_joint 1.847000e-01

Outputting figure to mutsig2_images.part000000000001/A2ML1.8_4505_10000_0.2561_0.1426_0.1847.png
                gene_name: A2ML1
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 28 percent done.
ABCA12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.569972e-02	ci left: 4.140880e-01	ci right 4.335564e-01	k: 4238	n:10000
Cons ci ratio: 8.338283e-02	ci left: 1.733992e-01	ci right 1.885872e-01	k: 1809	n:10000
KS ci ratio: 3.250553e-02	ci left: 5.827935e-01	ci right 6.021526e-01	k: 5925	n:10000
ABCA12   10000 perm   3 sec   (3069 perm/sec)   p_kst 5.925000e-01   p_cons 1.809000e-01   p_joint 4.238000e-01

Outputting figure to mutsig2_images.part000000000001/ABCA12.8_8031_10000_0.5925_0.1809_0.4238.png
                gene_name: ABCA12
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 30 percent done.
ABCC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.867409e-02	ci left: 6.419672e-01	ci right 6.607446e-01	k: 6514	n:10000
Cons ci ratio: 2.050319e-02	ci left: 7.770183e-01	ci right 7.932153e-01	k: 7852	n:10000
KS ci ratio: 4.132906e-02	ci left: 4.636729e-01	ci right 4.833426e-01	k: 4735	n:10000
ABCC5   10000 perm   2 sec   (4243 perm/sec)   p_kst 4.735000e-01   p_cons 7.852000e-01   p_joint 6.514000e-01

Outputting figure to mutsig2_images.part000000000001/ABCC5.8_4470_10000_0.4735_0.7852_0.6514.png
                gene_name: ABCC5
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 32 percent done.
ABCA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.631022e-02	ci left: 6.802263e-01	ci right 6.984633e-01	k: 6894	n:10000
Cons ci ratio: 4.608541e-02	ci left: 4.100020e-01	ci right 4.294448e-01	k: 4197	n:10000
KS ci ratio: 3.537443e-02	ci left: 5.412878e-01	ci right 5.608824e-01	k: 5511	n:10000
ABCA6   10000 perm   3 sec   (3827 perm/sec)   p_kst 5.511000e-01   p_cons 4.197000e-01   p_joint 6.894000e-01

Outputting figure to mutsig2_images.part000000000001/ABCA6.7_5006_10000_0.5511_0.4197_0.6894.png
                gene_name: ABCA6
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 33 percent done.
ABCB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.034940e-02	ci left: 3.677867e-01	ci right 3.868848e-01	k: 3773	n:10000
Cons ci ratio: 2.770819e-02	ci left: 6.574640e-01	ci right 6.760388e-01	k: 6668	n:10000
KS ci ratio: 6.548479e-02	ci left: 2.550834e-01	ci right 2.724544e-01	k: 2637	n:10000
ABCB4   10000 perm   2 sec   (4325 perm/sec)   p_kst 2.637000e-01   p_cons 6.668000e-01   p_joint 3.773000e-01

Outputting figure to mutsig2_images.part000000000001/ABCB4.7_3969_10000_0.2637_0.6668_0.3773.png
                gene_name: ABCB4
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 35 percent done.
A4GNT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.241139e-02	ci left: 5.841983e-01	ci right 6.035469e-01	k: 5939	n:10000
KS ci ratio: 1.781757e-02	ci left: 8.212717e-01	ci right 8.361363e-01	k: 8288	n:10000
A4GNT   10000 perm   2 sec   (6037 perm/sec)   p_kst 8.288000e-01   p_cons 5.939000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000001/A4GNT.6_1031_10000_0.8288_0.5939_1.png
                gene_name: A4GNT
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 37 percent done.
AASDH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.780502e-02	ci left: 8.214750e-01	ci right 8.363328e-01	k: 8290	n:10000
KS ci ratio: 2.328347e-02	ci left: 7.304755e-01	ci right 7.477850e-01	k: 7392	n:10000
AASDH   10000 perm   2 sec   (4453 perm/sec)   p_kst 7.392000e-01   p_cons 8.290000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000001/AASDH.6_3353_10000_0.7392_0.829_1.png
                gene_name: AASDH
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 39 percent done.
ABCA8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.514713e-02	ci left: 1.381531e-01	ci right 1.520544e-01	k: 1450	n:10000
Cons ci ratio: 1.879096e-01	ci left: 3.777051e-02	ci right 4.569926e-02	k: 416	n:10000
KS ci ratio: 2.904114e-02	ci left: 6.361335e-01	ci right 6.549816e-01	k: 6456	n:10000
ABCA8   10000 perm   2 sec   (4046 perm/sec)   p_kst 6.456000e-01   p_cons 4.160000e-02   p_joint 1.450000e-01

Joint ci ratio: 7.194405e-02	ci left: 1.245805e-01	ci right 1.339276e-01	k: 2584	n:20000
Cons ci ratio: 1.310813e-01	ci left: 3.998807e-02	ci right 4.564582e-02	k: 855	n:20000
KS ci ratio: 2.040835e-02	ci left: 6.417867e-01	ci right 6.550701e-01	k: 12969	n:20000
ABCA8   20000 perm   5 sec   (3764 perm/sec)   p_kst 6.484500e-01   p_cons 4.275000e-02   p_joint 1.292000e-01

Joint ci ratio: 4.427892e-02	ci left: 2.025264e-01	ci right 2.117304e-01	k: 6213	n:30000
Cons ci ratio: 1.021382e-01	ci left: 4.440477e-02	ci right 4.921682e-02	k: 1403	n:30000
KS ci ratio: 1.666663e-02	ci left: 6.429327e-01	ci right 6.537719e-01	k: 19451	n:30000
ABCA8   30000 perm   8 sec   (3649 perm/sec)   p_kst 6.483667e-01   p_cons 4.676667e-02   p_joint 2.071000e-01

Joint ci ratio: 4.454895e-02	ci left: 1.585500e-01	ci right 1.657991e-01	k: 6486	n:40000
Cons ci ratio: 8.738255e-02	ci left: 4.580311e-02	ci right 5.001284e-02	k: 1915	n:40000
KS ci ratio: 1.441458e-02	ci left: 6.442745e-01	ci right 6.536539e-01	k: 25959	n:40000
ABCA8   40000 perm   11 sec   (3558 perm/sec)   p_kst 6.489750e-01   p_cons 4.787500e-02   p_joint 1.621500e-01

Outputting figure to mutsig2_images.part000000000001/ABCA8.6_4894_40000_0.64897_0.047875_0.16215.png
                gene_name: ABCA8
               theta_stop: 0.087 
                    nperm: 40000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.048 
      ci_cons_bounds_left: 0.046 
     ci_cons_bounds_right: 0.050 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 40 percent done.
ABCB11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.740181e-02	ci left: 8.279846e-01	ci right 8.426195e-01	k: 8354	n:10000
Cons ci ratio: 1.751552e-02	ci left: 8.261534e-01	ci right 8.408517e-01	k: 8336	n:10000
KS ci ratio: 2.913003e-02	ci left: 6.347256e-01	ci right 6.535903e-01	k: 6442	n:10000
ABCB11   10000 perm   2 sec   (4345 perm/sec)   p_kst 6.442000e-01   p_cons 8.336000e-01   p_joint 8.354000e-01

Outputting figure to mutsig2_images.part000000000001/ABCB11.6_4074_10000_0.6442_0.8336_0.8354.png
                gene_name: ABCB11
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 42 percent done.
ABCC11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.623583e-02	ci left: 1.354096e-01	ci right 1.491994e-01	k: 1422	n:10000
Cons ci ratio: 1.927855e-01	ci left: 3.586235e-02	ci right 4.360871e-02	k: 396	n:10000
KS ci ratio: 1.510206e-02	ci left: 8.640678e-01	ci right 8.773155e-01	k: 8708	n:10000
ABCC11   10000 perm   2 sec   (4524 perm/sec)   p_kst 8.708000e-01   p_cons 3.960000e-02   p_joint 1.422000e-01

Joint ci ratio: 6.992313e-02	ci left: 1.310312e-01	ci right 1.405750e-01	k: 2715	n:20000
Cons ci ratio: 1.343100e-01	ci left: 3.810025e-02	ci right 4.363424e-02	k: 816	n:20000
KS ci ratio: 1.073229e-02	ci left: 8.649051e-01	ci right 8.742872e-01	k: 17393	n:20000
ABCC11   20000 perm   5 sec   (4063 perm/sec)   p_kst 8.696500e-01   p_cons 4.080000e-02   p_joint 1.357500e-01

Joint ci ratio: 5.325651e-02	ci left: 1.488776e-01	ci right 1.570564e-01	k: 4588	n:30000
Cons ci ratio: 1.064664e-01	ci left: 4.092707e-02	ci right 4.556191e-02	k: 1296	n:30000
KS ci ratio: 9.424389e-03	ci left: 8.481669e-01	ci right 8.562314e-01	k: 25567	n:30000
ABCC11   30000 perm   8 sec   (3900 perm/sec)   p_kst 8.522333e-01   p_cons 4.320000e-02   p_joint 1.529333e-01

Joint ci ratio: 4.688239e-02	ci left: 1.452759e-01	ci right 1.522752e-01	k: 5950	n:40000
Cons ci ratio: 9.369455e-02	ci left: 3.995732e-02	ci right 4.390953e-02	k: 1676	n:40000
KS ci ratio: 8.148978e-03	ci left: 8.491131e-01	ci right 8.560856e-01	k: 34105	n:40000
ABCC11   40000 perm   11 sec   (3787 perm/sec)   p_kst 8.526250e-01   p_cons 4.190000e-02   p_joint 1.487500e-01

Outputting figure to mutsig2_images.part000000000001/ABCC11.6_4265_40000_0.85262_0.0419_0.14875.png
                gene_name: ABCC11
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.042 
      ci_cons_bounds_left: 0.040 
     ci_cons_bounds_right: 0.044 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.15 

Current progress: 44 percent done.
ABCC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.490424e-02	ci left: 4.226610e-01	ci right 4.421784e-01	k: 4324	n:10000
Cons ci ratio: 5.810217e-02	ci left: 3.036194e-01	ci right 3.218898e-01	k: 3127	n:10000
KS ci ratio: 6.064282e-02	ci left: 2.856761e-01	ci right 3.036436e-01	k: 2946	n:10000
ABCC2   10000 perm   3 sec   (3984 perm/sec)   p_kst 2.946000e-01   p_cons 3.127000e-01   p_joint 4.324000e-01

Outputting figure to mutsig2_images.part000000000001/ABCC2.6_4766_10000_0.2946_0.3127_0.4324.png
                gene_name: ABCC2
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 46 percent done.
ABCC8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.093456e-02	ci left: 1.495278e-01	ci right 1.638728e-01	k: 1566	n:10000
Cons ci ratio: 1.330186e-01	ci left: 7.456177e-02	ci right 8.528446e-02	k: 798	n:10000
KS ci ratio: 3.871893e-02	ci left: 4.962503e-01	ci right 5.159461e-01	k: 5061	n:10000
ABCC8   10000 perm   2 sec   (4257 perm/sec)   p_kst 5.061000e-01   p_cons 7.980000e-02   p_joint 1.566000e-01

Joint ci ratio: 5.097547e-02	ci left: 2.223490e-01	ci right 2.340301e-01	k: 4563	n:20000
Cons ci ratio: 9.467332e-02	ci left: 7.520025e-02	ci right 8.272270e-02	k: 1578	n:20000
KS ci ratio: 2.744349e-02	ci left: 4.979955e-01	ci right 5.119030e-01	k: 10099	n:20000
ABCC8   20000 perm   5 sec   (3903 perm/sec)   p_kst 5.049500e-01   p_cons 7.890000e-02   p_joint 2.281500e-01

Outputting figure to mutsig2_images.part000000000001/ABCC8.6_4902_20000_0.50495_0.0789_0.22815.png
                gene_name: ABCC8
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.079 
      ci_cons_bounds_left: 0.075 
     ci_cons_bounds_right: 0.083 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 47 percent done.
ABCF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.261114e-01	ci left: 8.251809e-02	ci right 9.372320e-02	k: 880	n:10000
Cons ci ratio: 3.147915e-02	ci left: 5.982508e-01	ci right 6.174863e-01	k: 6079	n:10000
KS ci ratio: 1.489128e-01	ci left: 5.995589e-02	ci right 6.969950e-02	k: 647	n:10000
ABCF2   10000 perm   2 sec   (5579 perm/sec)   p_kst 6.470000e-02   p_cons 6.079000e-01   p_joint 8.800000e-02

Joint ci ratio: 7.988696e-02	ci left: 1.031412e-01	ci right 1.117733e-01	k: 2148	n:20000
Cons ci ratio: 2.220429e-02	ci left: 6.022970e-01	ci right 6.158713e-01	k: 12182	n:20000
KS ci ratio: 1.070774e-01	ci left: 5.942775e-02	ci right 6.620004e-02	k: 1255	n:20000
ABCF2   20000 perm   4 sec   (4966 perm/sec)   p_kst 6.275000e-02   p_cons 6.091000e-01   p_joint 1.074000e-01

Joint ci ratio: 6.928981e-02	ci left: 9.304996e-02	ci right 9.976176e-02	k: 2891	n:30000
Cons ci ratio: 1.810721e-02	ci left: 6.041529e-01	ci right 6.152259e-01	k: 18291	n:30000
KS ci ratio: 8.688895e-02	ci left: 6.076622e-02	ci right 6.631868e-02	k: 1905	n:30000
ABCF2   30000 perm   6 sec   (4728 perm/sec)   p_kst 6.350000e-02   p_cons 6.097000e-01   p_joint 9.636667e-02

Outputting figure to mutsig2_images.part000000000001/ABCF2.6_1969_30000_0.0635_0.6097_0.096367.png
                gene_name: ABCF2
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.064 
        ci_ks_bounds_left: 0.061 
       ci_ks_bounds_right: 0.066 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.096 
     ci_joint_bounds_left: 0.093 
    ci_joint_bounds_right: 0.100 

Current progress: 49 percent done.
ABCG8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.346716e-02	ci left: 2.133931e-01	ci right 2.297694e-01	k: 2215	n:10000
Cons ci ratio: 2.133354e-02	ci left: 7.631424e-01	ci right 7.796992e-01	k: 7715	n:10000
KS ci ratio: 1.330186e-01	ci left: 7.456177e-02	ci right 8.528446e-02	k: 798	n:10000
ABCG8   10000 perm   2 sec   (5824 perm/sec)   p_kst 7.980000e-02   p_cons 7.715000e-01   p_joint 2.215000e-01

Joint ci ratio: 6.653117e-02	ci left: 1.429572e-01	ci right 1.528454e-01	k: 2957	n:20000
Cons ci ratio: 1.495668e-02	ci left: 7.686435e-01	ci right 7.802766e-01	k: 15490	n:20000
KS ci ratio: 9.305140e-02	ci left: 7.769525e-02	ci right 8.532694e-02	k: 1629	n:20000
ABCG8   20000 perm   4 sec   (5097 perm/sec)   p_kst 8.145000e-02   p_cons 7.745000e-01   p_joint 1.478500e-01

Outputting figure to mutsig2_images.part000000000001/ABCG8.6_2074_20000_0.08145_0.7745_0.14785.png
                gene_name: ABCG8
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.081 
        ci_ks_bounds_left: 0.078 
       ci_ks_bounds_right: 0.085 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 51 percent done.
AADACL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.251018e-01	ci left: 8.378084e-02	ci right 9.505967e-02	k: 893	n:10000
Cons ci ratio: 3.239796e-02	ci left: 5.843990e-01	ci right 6.037461e-01	k: 5941	n:10000
KS ci ratio: 1.714031e-01	ci left: 4.542628e-02	ci right 5.403844e-02	k: 496	n:10000
AADACL2   10000 perm   2 sec   (5848 perm/sec)   p_kst 4.960000e-02   p_cons 5.941000e-01   p_joint 8.930000e-02

Joint ci ratio: 7.862204e-02	ci left: 1.061869e-01	ci right 1.149267e-01	k: 2210	n:20000
Cons ci ratio: 2.248974e-02	ci left: 5.961795e-01	ci right 6.097905e-01	k: 12060	n:20000
KS ci ratio: 1.201260e-01	ci left: 4.750575e-02	ci right 5.362575e-02	k: 1010	n:20000
AADACL2   20000 perm   4 sec   (5060 perm/sec)   p_kst 5.050000e-02   p_cons 6.030000e-01   p_joint 1.105000e-01

Joint ci ratio: 5.313354e-02	ci left: 1.494710e-01	ci right 1.576629e-01	k: 4606	n:30000
Cons ci ratio: 1.840406e-02	ci left: 5.963679e-01	ci right 6.074790e-01	k: 18058	n:30000
KS ci ratio: 9.324420e-02	ci left: 5.303346e-02	ci right 5.825301e-02	k: 1668	n:30000
AADACL2   30000 perm   6 sec   (4860 perm/sec)   p_kst 5.560000e-02   p_cons 6.019333e-01   p_joint 1.535333e-01

Outputting figure to mutsig2_images.part000000000001/AADACL2.5_1226_30000_0.0556_0.60193_0.15353.png
                gene_name: AADACL2
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.056 
        ci_ks_bounds_left: 0.053 
       ci_ks_bounds_right: 0.058 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 53 percent done.
AARS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.176048e-02	ci left: 3.549581e-01	ci right 3.739210e-01	k: 3644	n:10000
Cons ci ratio: 8.570440e-02	ci left: 1.655342e-01	ci right 1.804568e-01	k: 1729	n:10000
KS ci ratio: 4.139542e-02	ci left: 4.628739e-01	ci right 4.825420e-01	k: 4727	n:10000
AARS2   10000 perm   2 sec   (4941 perm/sec)   p_kst 4.727000e-01   p_cons 1.729000e-01   p_joint 3.644000e-01

Outputting figure to mutsig2_images.part000000000001/AARS2.5_3046_10000_0.4727_0.1729_0.3644.png
                gene_name: AARS2
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 54 percent done.
ABCA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.121080e-02	ci left: 1.487429e-01	ci right 1.630582e-01	k: 1558	n:10000
Cons ci ratio: 2.541692e-02	ci left: 6.949445e-01	ci right 7.129366e-01	k: 7040	n:10000
KS ci ratio: 1.227051e-01	ci left: 8.689066e-02	ci right 9.834794e-02	k: 925	n:10000
ABCA5   10000 perm   2 sec   (4214 perm/sec)   p_kst 9.250000e-02   p_cons 7.040000e-01   p_joint 1.558000e-01

Joint ci ratio: 6.719905e-02	ci left: 1.404921e-01	ci right 1.503112e-01	k: 2907	n:20000
Cons ci ratio: 1.799882e-02	ci left: 6.970155e-01	ci right 7.097253e-01	k: 14068	n:20000
KS ci ratio: 8.763043e-02	ci left: 8.695066e-02	ci right 9.496872e-02	k: 1818	n:20000
ABCA5   20000 perm   5 sec   (3762 perm/sec)   p_kst 9.090000e-02   p_cons 7.034000e-01   p_joint 1.453500e-01

Outputting figure to mutsig2_images.part000000000001/ABCA5.5_5081_20000_0.0909_0.7034_0.14535.png
                gene_name: ABCA5
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.091 
        ci_ks_bounds_left: 0.087 
       ci_ks_bounds_right: 0.095 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 56 percent done.
ABCB10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.127694e-01	ci left: 1.016890e-01	ci right 1.139406e-01	k: 1077	n:10000
Cons ci ratio: 1.024951e-01	ci left: 1.210221e-01	ci right 1.341957e-01	k: 1275	n:10000
KS ci ratio: 1.255651e-01	ci left: 8.319799e-02	ci right 9.444288e-02	k: 887	n:10000
ABCB10   10000 perm   2 sec   (5380 perm/sec)   p_kst 8.870000e-02   p_cons 1.275000e-01   p_joint 1.077000e-01

Joint ci ratio: 8.017988e-02	ci left: 1.024537e-01	ci right 1.110610e-01	k: 2134	n:20000
Cons ci ratio: 7.231397e-02	ci left: 1.234484e-01	ci right 1.327600e-01	k: 2561	n:20000
KS ci ratio: 8.786976e-02	ci left: 8.650961e-02	ci right 9.450990e-02	k: 1809	n:20000
ABCB10   20000 perm   4 sec   (4782 perm/sec)   p_kst 9.045000e-02   p_cons 1.280500e-01   p_joint 1.067000e-01

Outputting figure to mutsig2_images.part000000000001/ABCB10.5_2269_20000_0.09045_0.12805_0.1067.png
                gene_name: ABCB10
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.090 
        ci_ks_bounds_left: 0.087 
       ci_ks_bounds_right: 0.095 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 58 percent done.
ABCC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.647618e-02	ci left: 6.775056e-01	ci right 6.957856e-01	k: 6867	n:10000
Cons ci ratio: 1.254161e-02	ci left: 9.013439e-01	ci right 9.128177e-01	k: 9072	n:10000
KS ci ratio: 4.417999e-02	ci left: 4.306386e-01	ci right 4.501961e-01	k: 4404	n:10000
ABCC1   10000 perm   2 sec   (4564 perm/sec)   p_kst 4.404000e-01   p_cons 9.072000e-01   p_joint 6.867000e-01

Outputting figure to mutsig2_images.part000000000001/ABCC1.5_4720_10000_0.4404_0.9072_0.6867.png
                gene_name: ABCC1
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 60 percent done.
A1CF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.014424e-02	ci left: 7.829981e-01	ci right 7.990320e-01	k: 7911	n:10000
KS ci ratio: 2.817083e-02	ci left: 6.500161e-01	ci right 6.686910e-01	k: 6594	n:10000
A1CF   10000 perm   2 sec   (5644 perm/sec)   p_kst 6.594000e-01   p_cons 7.911000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000001/A1CF.4_1956_10000_0.6594_0.7911_1.png
                gene_name: A1CF
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 61 percent done.
AATK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.444763e-02	ci left: 5.544138e-01	ci right 5.739488e-01	k: 5642	n:10000
Cons ci ratio: 4.011404e-02	ci left: 4.785574e-01	ci right 4.982494e-01	k: 4884	n:10000
KS ci ratio: 5.136070e-02	ci left: 3.585374e-01	ci right 3.775395e-01	k: 3680	n:10000
AATK   10000 perm   2 sec   (5185 perm/sec)   p_kst 3.680000e-01   p_cons 4.884000e-01   p_joint 5.642000e-01

Outputting figure to mutsig2_images.part000000000001/AATK.4_4181_10000_0.368_0.4884_0.5642.png
                gene_name: AATK
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 63 percent done.
ABCA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.734486e-02	ci left: 8.289004e-01	ci right 8.435032e-01	k: 8363	n:10000
KS ci ratio: 2.802049e-02	ci left: 6.524314e-01	ci right 6.710743e-01	k: 6618	n:10000
ABCA3   10000 perm   2 sec   (4148 perm/sec)   p_kst 6.618000e-01   p_cons 8.363000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000001/ABCA3.4_5235_10000_0.6618_0.8363_1.png
                gene_name: ABCA3
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
ABCA7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.381504e-02	ci left: 7.215864e-01	ci right 7.390793e-01	k: 7304	n:10000
KS ci ratio: 1.735119e-02	ci left: 8.287986e-01	ci right 8.434050e-01	k: 8362	n:10000
ABCA7   10000 perm   3 sec   (3785 perm/sec)   p_kst 8.362000e-01   p_cons 7.304000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000001/ABCA7.4_6625_10000_0.8362_0.7304_1.png
                gene_name: ABCA7
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
ABCG4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.006440e-02	ci left: 2.896400e-01	ci right 3.076774e-01	k: 2986	n:10000
Cons ci ratio: 8.853449e-02	ci left: 1.565950e-01	ci right 1.712014e-01	k: 1638	n:10000
KS ci ratio: 3.761910e-02	ci left: 5.106536e-01	ci right 5.303344e-01	k: 5205	n:10000
ABCG4   10000 perm   2 sec   (5840 perm/sec)   p_kst 5.205000e-01   p_cons 1.638000e-01   p_joint 2.986000e-01

Outputting figure to mutsig2_images.part000000000001/ABCG4.4_1997_10000_0.5205_0.1638_0.2986.png
                gene_name: ABCG4
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 68 percent done.
A2BP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.583820e-02	ci left: 8.527383e-01	ci right 8.664514e-01	k: 8597	n:10000
Cons ci ratio: 3.360775e-02	ci left: 5.665439e-01	ci right 5.860116e-01	k: 5763	n:10000
KS ci ratio: 2.255332e-02	ci left: 7.427054e-01	ci right 7.597480e-01	k: 7513	n:10000
A2BP1   10000 perm   2 sec   (5990 perm/sec)   p_kst 7.513000e-01   p_cons 5.763000e-01   p_joint 8.597000e-01

Outputting figure to mutsig2_images.part000000000001/A2BP1.3_1441_10000_0.7513_0.5763_0.8597.png
                gene_name: A2BP1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 70 percent done.
AADAC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.279465e-02	ci left: 7.386615e-01	ci right 7.557942e-01	k: 7473	n:10000
Cons ci ratio: 4.500499e-02	ci left: 4.215643e-01	ci right 4.410757e-01	k: 4313	n:10000
KS ci ratio: 1.990030e-02	ci left: 7.870536e-01	ci right 8.029742e-01	k: 7951	n:10000
AADAC   10000 perm   2 sec   (6439 perm/sec)   p_kst 7.951000e-01   p_cons 4.313000e-01   p_joint 7.473000e-01

Outputting figure to mutsig2_images.part000000000001/AADAC.3_1220_10000_0.7951_0.4313_0.7473.png
                gene_name: AADAC
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 72 percent done.
AARSD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.422056e-02	ci left: 2.099406e-01	ci right 2.262240e-01	k: 2180	n:10000
Cons ci ratio: 1.302908e-01	ci left: 7.756782e-02	ci right 8.847654e-02	k: 829	n:10000
KS ci ratio: 2.454149e-02	ci left: 7.094718e-01	ci right 7.272009e-01	k: 7184	n:10000
AARSD1   10000 perm   2 sec   (5904 perm/sec)   p_kst 7.184000e-01   p_cons 8.290000e-02   p_joint 2.180000e-01

Joint ci ratio: 4.317173e-02	ci left: 2.855551e-01	ci right 2.982054e-01	k: 5837	n:20000
Cons ci ratio: 9.159097e-02	ci left: 8.004448e-02	ci right 8.777699e-02	k: 1677	n:20000
KS ci ratio: 1.734953e-02	ci left: 7.122107e-01	ci right 7.247257e-01	k: 14370	n:20000
AARSD1   20000 perm   4 sec   (5263 perm/sec)   p_kst 7.185000e-01   p_cons 8.385000e-02   p_joint 2.918500e-01

Outputting figure to mutsig2_images.part000000000001/AARSD1.3_1872_20000_0.7185_0.08385_0.29185.png
                gene_name: AARSD1
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.084 
      ci_cons_bounds_left: 0.080 
     ci_cons_bounds_right: 0.088 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 74 percent done.
ABAT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.972212e-02	ci left: 2.920188e-01	ci right 3.100972e-01	k: 3010	n:10000
KS ci ratio: 1.581851e-02	ci left: 8.530443e-01	ci right 8.667453e-01	k: 8600	n:10000
ABAT   10000 perm   2 sec   (6050 perm/sec)   p_kst 8.600000e-01   p_cons 3.010000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000001/ABAT.3_1563_10000_0.86_0.301_1.png
                gene_name: ABAT
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
ABCB6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.473089e-02	ci left: 4.245555e-01	ci right 4.440828e-01	k: 4343	n:10000
Cons ci ratio: 7.686376e-02	ci left: 1.984054e-01	ci right 2.143660e-01	k: 2063	n:10000
KS ci ratio: 1.160350e-02	ci left: 9.139945e-01	ci right 9.247597e-01	k: 9195	n:10000
ABCB6   10000 perm   2 sec   (5362 perm/sec)   p_kst 9.195000e-01   p_cons 2.063000e-01   p_joint 4.343000e-01

Outputting figure to mutsig2_images.part000000000001/ABCB6.3_2605_10000_0.9195_0.2063_0.4343.png
                gene_name: ABCB6
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 77 percent done.
ABCB9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.986977e-02	ci left: 7.875606e-01	ci right 8.034668e-01	k: 7956	n:10000
KS ci ratio: 1.182907e-02	ci left: 9.110088e-01	ci right 9.219471e-01	k: 9166	n:10000
ABCB9   10000 perm   2 sec   (5658 perm/sec)   p_kst 9.166000e-01   p_cons 7.956000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000001/ABCB9.3_2345_10000_0.9166_0.7956_1.png
                gene_name: ABCB9
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
ABCC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.770450e-02	ci left: 8.231021e-01	ci right 8.379049e-01	k: 8306	n:10000
KS ci ratio: 2.199211e-02	ci left: 7.521113e-01	ci right 7.689367e-01	k: 7606	n:10000
ABCC3   10000 perm   2 sec   (4605 perm/sec)   p_kst 7.606000e-01   p_cons 8.306000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000001/ABCC3.3_4792_10000_0.7606_0.8306_1.png
                gene_name: ABCC3
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
ABCD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.685049e-02	ci left: 4.020311e-01	ci right 4.214204e-01	k: 4117	n:10000
Cons ci ratio: 2.220940e-02	ci left: 7.484697e-01	ci right 7.653804e-01	k: 7570	n:10000
KS ci ratio: 7.409025e-02	ci left: 2.105324e-01	ci right 2.268318e-01	k: 2186	n:10000
ABCD1   10000 perm   2 sec   (5724 perm/sec)   p_kst 2.186000e-01   p_cons 7.570000e-01   p_joint 4.117000e-01

Outputting figure to mutsig2_images.part000000000001/ABCD1.3_2278_10000_0.2186_0.757_0.4117.png
                gene_name: ABCD1
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 82 percent done.
ABHD10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.551311e-02	ci left: 4.160815e-01	ci right 4.355618e-01	k: 4258	n:10000
Cons ci ratio: 8.313059e-02	ci left: 1.742843e-01	ci right 1.895015e-01	k: 1818	n:10000
KS ci ratio: 2.251712e-02	ci left: 7.433121e-01	ci right 7.603410e-01	k: 7519	n:10000
ABHD10   10000 perm   2 sec   (6566 perm/sec)   p_kst 7.519000e-01   p_cons 1.818000e-01   p_joint 4.258000e-01

Outputting figure to mutsig2_images.part000000000001/ABHD10.3_941_10000_0.7519_0.1818_0.4258.png
                gene_name: ABHD10
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 84 percent done.
ABI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.389760e-02	ci left: 5.623328e-01	ci right 5.818252e-01	k: 5721	n:10000
KS ci ratio: 2.194986e-02	ci left: 7.528195e-01	ci right 7.696281e-01	k: 7613	n:10000
ABI1   10000 perm   2 sec   (6196 perm/sec)   p_kst 7.613000e-01   p_cons 5.721000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000001/ABI1.3_1630_10000_0.7613_0.5721_1.png
                gene_name: ABI1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
AADACL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.325328e-02	ci left: 7.309807e-01	ci right 7.482795e-01	k: 7397	n:10000
KS ci ratio: 2.719233e-02	ci left: 6.658208e-01	ci right 6.842772e-01	k: 6751	n:10000
AADACL4   10000 perm   2 sec   (6643 perm/sec)   p_kst 6.751000e-01   p_cons 7.397000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000001/AADACL4.2_1240_10000_0.6751_0.7397_1.png
                gene_name: AADACL4
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
AAK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.947396e-02	ci left: 6.292960e-01	ci right 6.482231e-01	k: 6388	n:10000
Cons ci ratio: 1.584068e-01	ci left: 5.311294e-02	ci right 6.234681e-02	k: 576	n:10000
KS ci ratio: 6.675939e-03	ci left: 9.684703e-01	ci right 9.750510e-01	k: 9719	n:10000
AAK1   10000 perm   2 sec   (5555 perm/sec)   p_kst 9.719000e-01   p_cons 5.760000e-02   p_joint 6.388000e-01

Joint ci ratio: 1.636592e-02	ci left: 7.353725e-01	ci right 7.475572e-01	k: 14830	n:20000
Cons ci ratio: 1.113996e-01	ci left: 5.504340e-02	ci right 6.158575e-02	k: 1165	n:20000
KS ci ratio: 4.660556e-03	ci left: 9.701907e-01	ci right 9.747705e-01	k: 19451	n:20000
AAK1   20000 perm   4 sec   (4957 perm/sec)   p_kst 9.725500e-01   p_cons 5.825000e-02   p_joint 7.415000e-01

Joint ci ratio: 1.334186e-02	ci left: 7.371096e-01	ci right 7.470435e-01	k: 22263	n:30000
Cons ci ratio: 9.154307e-02	ci left: 5.495723e-02	ci right 6.026218e-02	k: 1727	n:30000
KS ci ratio: 3.798368e-03	ci left: 9.707241e-01	ci right 9.744503e-01	k: 29179	n:30000
AAK1   30000 perm   6 sec   (4711 perm/sec)   p_kst 9.726333e-01   p_cons 5.756667e-02   p_joint 7.421000e-01

Outputting figure to mutsig2_images.part000000000001/AAK1.2_2970_30000_0.97263_0.057567_0.7421.png
                gene_name: AAK1
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.058 
      ci_cons_bounds_left: 0.055 
     ci_cons_bounds_right: 0.060 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.75 

Current progress: 89 percent done.
AARS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.052715e-02	ci left: 9.277156e-01	ci right 9.376305e-01	k: 9328	n:10000
Cons ci ratio: 8.315853e-02	ci left: 1.741859e-01	ci right 1.893999e-01	k: 1817	n:10000
KS ci ratio: 3.840271e-02	ci left: 5.003504e-01	ci right 5.200436e-01	k: 5102	n:10000
AARS   10000 perm   2 sec   (5487 perm/sec)   p_kst 5.102000e-01   p_cons 1.817000e-01   p_joint 9.328000e-01

Outputting figure to mutsig2_images.part000000000001/AARS.2_2987_10000_0.5102_0.1817_0.9328.png
                gene_name: AARS
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 91 percent done.
ABCB7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.077830e-02	ci left: 1.828443e-01	ci right 1.983364e-01	k: 1905	n:10000
Cons ci ratio: 9.100344e-02	ci left: 1.493316e-01	ci right 1.636692e-01	k: 1564	n:10000
KS ci ratio: 1.087943e-01	ci left: 1.086148e-01	ci right 1.212105e-01	k: 1148	n:10000
ABCB7   10000 perm   2 sec   (5990 perm/sec)   p_kst 1.148000e-01   p_cons 1.564000e-01   p_joint 1.905000e-01

Joint ci ratio: 6.591775e-02	ci left: 1.452747e-01	ci right 1.552272e-01	k: 3004	n:20000
Cons ci ratio: 5.606796e-02	ci left: 1.908641e-01	ci right 2.019243e-01	k: 3927	n:20000
KS ci ratio: 7.659211e-02	ci left: 1.113472e-01	ci right 1.202648e-01	k: 2315	n:20000
ABCB7   20000 perm   4 sec   (5203 perm/sec)   p_kst 1.157500e-01   p_cons 1.963500e-01   p_joint 1.502000e-01

Outputting figure to mutsig2_images.part000000000001/ABCB7.2_2326_20000_0.11575_0.19635_0.1502.png
                gene_name: ABCB7
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 93 percent done.
ABCF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.152702e-02	ci left: 7.599031e-01	ci right 7.765404e-01	k: 7683	n:10000
Cons ci ratio: 4.024266e-02	ci left: 4.769586e-01	ci right 4.966491e-01	k: 4868	n:10000
KS ci ratio: 7.291787e-02	ci left: 2.159584e-01	ci right 2.324025e-01	k: 2241	n:10000
ABCF1   10000 perm   2 sec   (5926 perm/sec)   p_kst 2.241000e-01   p_cons 4.868000e-01   p_joint 7.683000e-01

Outputting figure to mutsig2_images.part000000000001/ABCF1.2_2638_10000_0.2241_0.4868_0.7683.png
                gene_name: ABCF1
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 95 percent done.
ABCG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.918611e-02	ci left: 1.546314e-01	ci right 1.691662e-01	k: 1618	n:10000
Cons ci ratio: 1.175301e-01	ci left: 9.418721e-02	ci right 1.060469e-01	k: 1000	n:10000
KS ci ratio: 1.317679e-01	ci left: 7.591905e-02	ci right 8.672633e-02	k: 812	n:10000
ABCG2   10000 perm   2 sec   (6058 perm/sec)   p_kst 8.120000e-02   p_cons 1.000000e-01   p_joint 1.618000e-01

Joint ci ratio: 1.747181e-02	ci left: 7.093421e-01	ci right 7.218952e-01	k: 14313	n:20000
Cons ci ratio: 8.039080e-02	ci left: 1.019626e-01	ci right 1.105523e-01	k: 2124	n:20000
KS ci ratio: 9.393256e-02	ci left: 7.632531e-02	ci right 8.389730e-02	k: 1601	n:20000
ABCG2   20000 perm   4 sec   (5376 perm/sec)   p_kst 8.005000e-02   p_cons 1.062000e-01   p_joint 7.156500e-01

Outputting figure to mutsig2_images.part000000000001/ABCG2.2_2028_20000_0.08005_0.1062_0.71565.png
                gene_name: ABCG2
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.080 
        ci_ks_bounds_left: 0.076 
       ci_ks_bounds_right: 0.084 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.72 

Current progress: 96 percent done.
ABCG5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.484940e-02	ci left: 4.232593e-01	ci right 4.427798e-01	k: 4330	n:10000
Cons ci ratio: 5.791351e-02	ci left: 3.050079e-01	ci right 3.233005e-01	k: 3141	n:10000
KS ci ratio: 2.632250e-02	ci left: 6.800247e-01	ci right 6.982650e-01	k: 6892	n:10000
ABCG5   10000 perm   2 sec   (6133 perm/sec)   p_kst 6.892000e-01   p_cons 3.141000e-01   p_joint 4.330000e-01

Outputting figure to mutsig2_images.part000000000001/ABCG5.2_2008_10000_0.6892_0.3141_0.433.png
                gene_name: ABCG5
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 98 percent done.
ABHD13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.435137e-02	ci left: 2.093488e-01	ci right 2.256161e-01	k: 2174	n:10000
Cons ci ratio: 1.106525e-01	ci left: 1.052972e-01	ci right 1.177301e-01	k: 1114	n:10000
KS ci ratio: 7.435137e-02	ci left: 2.093488e-01	ci right 2.256161e-01	k: 2174	n:10000
ABHD13   10000 perm   1 sec   (6789 perm/sec)   p_kst 2.174000e-01   p_cons 1.114000e-01   p_joint 2.174000e-01

Joint ci ratio: 2.095747e-02	ci left: 6.295383e-01	ci right 6.429221e-01	k: 12725	n:20000
Cons ci ratio: 7.791074e-02	ci left: 1.079558e-01	ci right 1.167573e-01	k: 2246	n:20000
KS ci ratio: 5.170993e-02	ci left: 2.173952e-01	ci right 2.289853e-01	k: 4463	n:20000
ABHD13   20000 perm   3 sec   (5912 perm/sec)   p_kst 2.231500e-01   p_cons 1.123000e-01   p_joint 6.362500e-01

Outputting figure to mutsig2_images.part000000000001/ABHD13.2_1018_20000_0.22315_0.1123_0.63625.png
                gene_name: ABHD13
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.64 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000001
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 1 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1422>
Subject: Job 8003779: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1422>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000002> was used as the working directory.
Started at Sun Nov 11 15:03:01 2012
Results reported at Sun Nov 11 15:12:04 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000002.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000002.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 2  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000002.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    699.71 sec.
    Max Memory :      4787 MB
    Max Swap   :      7058 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
2
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 2
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 2: processing genes 91 - 181
Calculating significance of each gene.
Using projection method.
91	ABI3BP	2.473947e-02
92	ABL1	9.895147e-01
93	ABL2	2.447524e-01
94	ABLIM1	1
95	ABLIM2	1
96	ABLIM3	6.653548e-01
97	ABO	6.072227e-01
98	ABP1	5.718738e-01
99	ABR	7.761905e-01
100	ABRA	6.039462e-01
101	ABT1	1
102	ABTB1	1
103	ABTB2	7.596693e-01
104	ACAA1	7.657495e-01
105	ACAA2	7.630374e-01
106	ACACA	1
107	ACACB	9.888045e-01
108	ACAD10	9.605226e-01
109	ACAD11	1
110	ACAD8	3.719602e-01
111	ACAD9	8.537213e-01
112	ACADL	4.595079e-01
113	ACADM	7.122997e-01
114	ACADS	4.022616e-01
115	ACADSB	1
116	ACADVL	8.831013e-01
117	ACAN	8.124033e-01
118	ACAP1	1
119	ACAP2	6.701252e-01
120	ACAP3	1
121	ACAT1	3.675980e-01
122	ACAT2	1
123	ACBD3	4.777163e-01
124	ACBD4	6.924993e-01
125	ACBD5	6.036434e-01
126	ACBD6	7.059426e-01
127	ACBD7	2.235259e-01
128	ACCN1	3.164685e-01
129	ACCN2	4.359068e-01
130	ACCN3	4.288490e-01
131	ACCN4	2.654118e-01
132	ACCN5	8.485845e-02
133	ACCS	4.438931e-01
134	ACCSL	6.762153e-02
135	ACD	8.134154e-01
136	ACE	6.905183e-01
137	ACE2	5.145475e-01
138	ACER1	6.151619e-01
139	ACER2	2.107832e-01
140	ACER3	1
141	ACHE	5.174585e-01
142	ACIN1	9.601189e-01
143	ACLY	1
144	ACMSD	7.795987e-01
145	ACN9	2.050103e-01
146	ACO1	8.342100e-01
147	ACO2	7.163596e-01
148	ACOT1	1
149	ACOT11	8.555031e-01
150	ACOT12	7.573945e-01
151	ACOT13	1
152	ACOT2	1.107243e-01
153	ACOT4	1
154	ACOT6	1
155	ACOT7	1
156	ACOT8	2.088803e-01
157	ACOT9	1
158	ACOX1	9.034118e-01
159	ACOX2	9.233879e-01
160	ACOX3	1.744427e-01
161	ACOXL	3.004903e-01
162	ACP1	7.871066e-02
163	ACP2	7.527051e-01
164	ACP5	1
165	ACP6	3.205329e-01
166	ACPL2	3.597428e-01
167	ACPP	1
168	ACPT	7.074226e-01
169	ACR	5.649505e-01
170	ACRBP	1
171	ACRC	2.379987e-01
172	ACRV1	6.083353e-01
173	ACSBG1	8.833539e-01
174	ACSBG2	8.312237e-01
175	ACSF2	7.916446e-01
176	ACSF3	4.807989e-01
177	ACSL1	7.685698e-01
178	ACSL3	6.339733e-01
179	ACSL4	6.452343e-01
180	ACSL5	1
181	ACSL6	7.616152e-01
Done

Running MutSig 2:
Scatter job 2: processing genes 91 - 181
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ACAN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.507050e-02	ci left: 1.383491e-01	ci right 1.522583e-01	k: 1452	n:10000
Cons ci ratio: 4.841319e-02	ci left: 3.862964e-01	ci right 4.055643e-01	k: 3959	n:10000
KS ci ratio: 8.770386e-02	ci left: 1.591483e-01	ci right 1.738466e-01	k: 1664	n:10000
ACAN   10000 perm   3 sec   (3089 perm/sec)   p_kst 1.664000e-01   p_cons 3.959000e-01   p_joint 1.452000e-01

Outputting figure to mutsig2_images.part000000000002/ACAN.12_7661_10000_0.1664_0.3959_0.1452.png
                gene_name: ACAN
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 2 percent done.
ABI3BP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.785097e-01	ci left: 4.188120e-02	ci right 5.018585e-02	k: 459	n:10000
Cons ci ratio: 2.669889e-01	ci left: 1.827990e-02	ci right 2.400381e-02	k: 210	n:10000
KS ci ratio: 4.730797e-02	ci left: 3.973494e-01	ci right 4.167048e-01	k: 4070	n:10000
ABI3BP   10000 perm   3 sec   (3973 perm/sec)   p_kst 4.070000e-01   p_cons 2.100000e-02   p_joint 4.590000e-02

Joint ci ratio: 1.463025e-01	ci left: 3.210991e-02	ci right 3.722654e-02	k: 692	n:20000
Cons ci ratio: 1.822815e-01	ci left: 2.053707e-02	ci right 2.470332e-02	k: 451	n:20000
KS ci ratio: 3.239040e-02	ci left: 4.158404e-01	ci right 4.295820e-01	k: 8454	n:20000
ABI3BP   20000 perm   5 sec   (3659 perm/sec)   p_kst 4.227000e-01   p_cons 2.255000e-02   p_joint 3.460000e-02

Joint ci ratio: 9.938418e-02	ci left: 4.684472e-02	ci right 5.177636e-02	k: 1478	n:30000
Cons ci ratio: 1.492846e-01	ci left: 2.078729e-02	ci right 2.417273e-02	k: 673	n:30000
KS ci ratio: 2.645106e-02	ci left: 4.170346e-01	ci right 4.282471e-01	k: 12679	n:30000
ABI3BP   30000 perm   8 sec   (3542 perm/sec)   p_kst 4.226333e-01   p_cons 2.243333e-02   p_joint 4.926667e-02

Joint ci ratio: 9.050223e-02	ci left: 4.276891e-02	ci right 4.684750e-02	k: 1791	n:40000
Cons ci ratio: 1.319895e-01	ci left: 2.014929e-02	ci right 2.302075e-02	k: 862	n:40000
KS ci ratio: 2.327804e-02	ci left: 4.099905e-01	ci right 4.196718e-01	k: 16593	n:40000
ABI3BP   40000 perm   12 sec   (3461 perm/sec)   p_kst 4.148250e-01   p_cons 2.155000e-02   p_joint 4.477500e-02

Joint ci ratio: 7.425079e-02	ci left: 5.083616e-02	ci right 5.477597e-02	k: 2639	n:50000
Cons ci ratio: 1.166673e-01	ci left: 2.079038e-02	ci right 2.338552e-02	k: 1103	n:50000
KS ci ratio: 2.082349e-02	ci left: 4.104366e-01	ci right 4.190933e-01	k: 20738	n:50000
ABI3BP   50000 perm   15 sec   (3398 perm/sec)   p_kst 4.147600e-01   p_cons 2.206000e-02   p_joint 5.278000e-02

Joint ci ratio: 6.845712e-02	ci left: 5.004006e-02	ci right 5.360345e-02	k: 3108	n:60000
Cons ci ratio: 1.063301e-01	ci left: 2.097100e-02	ci right 2.334220e-02	k: 1328	n:60000
KS ci ratio: 1.892962e-02	ci left: 4.128508e-01	ci right 4.207573e-01	k: 25008	n:60000
ABI3BP   60000 perm   18 sec   (3339 perm/sec)   p_kst 4.168000e-01   p_cons 2.213333e-02   p_joint 5.180000e-02

Joint ci ratio: 6.004020e-02	ci left: 5.567401e-02	ci right 5.913422e-02	k: 4017	n:70000
Cons ci ratio: 9.924752e-02	ci left: 2.071699e-02	ci right 2.289433e-02	k: 1525	n:70000
KS ci ratio: 1.751315e-02	ci left: 4.134864e-01	ci right 4.208061e-01	k: 29200	n:70000
ABI3BP   70000 perm   21 sec   (3286 perm/sec)   p_kst 4.171429e-01   p_cons 2.178571e-02   p_joint 5.738571e-02

Outputting figure to mutsig2_images.part000000000002/ABI3BP.10_3368_70000_0.41714_0.021786_0.057386.png
                gene_name: ABI3BP
               theta_stop: 0.099 
                    nperm: 70000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.022 
      ci_cons_bounds_left: 0.021 
     ci_cons_bounds_right: 0.023 
                  p_joint: 0.057 
     ci_joint_bounds_left: 0.056 
    ci_joint_bounds_right: 0.059 

Current progress: 4 percent done.
ACACB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.742576e-02	ci left: 3.961543e-01	ci right 4.155006e-01	k: 4058	n:10000
Cons ci ratio: 9.935064e-02	ci left: 1.279678e-01	ci right 1.414457e-01	k: 1346	n:10000
KS ci ratio: 3.269431e-02	ci left: 5.799842e-01	ci right 5.993635e-01	k: 5897	n:10000
ACACB   10000 perm   3 sec   (3086 perm/sec)   p_kst 5.897000e-01   p_cons 1.346000e-01   p_joint 4.058000e-01

Outputting figure to mutsig2_images.part000000000002/ACACB.9_7585_10000_0.5897_0.1346_0.4058.png
                gene_name: ACACB
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 6 percent done.
ABL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.370683e-01	ci left: 7.039603e-02	ci right 8.085279e-02	k: 755	n:10000
Cons ci ratio: 6.493302e-02	ci left: 2.583481e-01	ci right 2.757878e-01	k: 2670	n:10000
KS ci ratio: 1.656929e-01	ci left: 4.859368e-02	ci right 5.746898e-02	k: 529	n:10000
ABL2   10000 perm   2 sec   (4079 perm/sec)   p_kst 5.290000e-02   p_cons 2.670000e-01   p_joint 7.550000e-02

Joint ci ratio: 9.906657e-02	ci left: 6.899234e-02	ci right 7.623250e-02	k: 1451	n:20000
Cons ci ratio: 4.584463e-02	ci left: 2.615233e-01	ci right 2.738444e-01	k: 5353	n:20000
KS ci ratio: 1.172820e-01	ci left: 4.978945e-02	ci right 5.604134e-02	k: 1057	n:20000
ABL2   20000 perm   5 sec   (3743 perm/sec)   p_kst 5.285000e-02   p_cons 2.676500e-01   p_joint 7.255000e-02

Joint ci ratio: 7.716840e-02	ci left: 7.613559e-02	ci right 8.227953e-02	k: 2375	n:30000
Cons ci ratio: 3.777236e-02	ci left: 2.591509e-01	ci right 2.691615e-01	k: 7924	n:30000
KS ci ratio: 9.516112e-02	ci left: 5.098028e-02	ci right 5.610662e-02	k: 1605	n:30000
ABL2   30000 perm   8 sec   (3601 perm/sec)   p_kst 5.350000e-02   p_cons 2.641333e-01   p_joint 7.916667e-02

Outputting figure to mutsig2_images.part000000000002/ABL2.7_3758_30000_0.0535_0.26413_0.079167.png
                gene_name: ABL2
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.053 
        ci_ks_bounds_left: 0.051 
       ci_ks_bounds_right: 0.056 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.079 
     ci_joint_bounds_left: 0.076 
    ci_joint_bounds_right: 0.082 

Current progress: 8 percent done.
ACSBG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.874217e-02	ci left: 4.959503e-01	ci right 5.156463e-01	k: 5058	n:10000
KS ci ratio: 2.015033e-02	ci left: 7.828967e-01	ci right 7.989335e-01	k: 7910	n:10000
ACSBG1   10000 perm   2 sec   (5175 perm/sec)   p_kst 7.910000e-01   p_cons 5.058000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000002/ACSBG1.7_2231_10000_0.791_0.5058_1.png
                gene_name: ACSBG1
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 9 percent done.
ACCN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.649665e-02	ci left: 5.257659e-01	ci right 5.454134e-01	k: 5356	n:10000
Cons ci ratio: 1.665611e-02	ci left: 8.398953e-01	ci right 8.541019e-01	k: 8471	n:10000
KS ci ratio: 5.607094e-02	ci left: 3.189980e-01	ci right 3.375022e-01	k: 3282	n:10000
ACCN1   10000 perm   2 sec   (4960 perm/sec)   p_kst 3.282000e-01   p_cons 8.471000e-01   p_joint 5.356000e-01

Outputting figure to mutsig2_images.part000000000002/ACCN1.6_2291_10000_0.3282_0.8471_0.5356.png
                gene_name: ACCN1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 11 percent done.
ABP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.931866e-02	ci left: 2.338293e-01	ci right 2.507211e-01	k: 2422	n:10000
Cons ci ratio: 1.835482e-02	ci left: 8.125304e-01	ci right 8.276826e-01	k: 8202	n:10000
KS ci ratio: 1.238882e-01	ci left: 8.533549e-02	ci right 9.670407e-02	k: 909	n:10000
ABP1   10000 perm   2 sec   (5128 perm/sec)   p_kst 9.090000e-02   p_cons 8.202000e-01   p_joint 2.422000e-01

Joint ci ratio: 6.142041e-02	ci left: 1.639778e-01	ci right 1.744185e-01	k: 3383	n:20000
Cons ci ratio: 1.335089e-02	ci left: 8.062116e-01	ci right 8.170976e-01	k: 16234	n:20000
KS ci ratio: 8.967923e-02	ci left: 8.327621e-02	ci right 9.114429e-02	k: 1743	n:20000
ABP1   20000 perm   4 sec   (4578 perm/sec)   p_kst 8.715000e-02   p_cons 8.117000e-01   p_joint 1.691500e-01

Outputting figure to mutsig2_images.part000000000002/ABP1.5_2272_20000_0.08715_0.8117_0.16915.png
                gene_name: ABP1
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.087 
        ci_ks_bounds_left: 0.083 
       ci_ks_bounds_right: 0.091 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 13 percent done.
ABR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.312848e-02	ci left: 5.735640e-01	ci right 5.929874e-01	k: 5833	n:10000
Cons ci ratio: 4.272236e-02	ci left: 4.472002e-01	ci right 4.668248e-01	k: 4570	n:10000
KS ci ratio: 4.355812e-02	ci left: 4.376211e-01	ci right 4.572096e-01	k: 4474	n:10000
ABR   10000 perm   2 sec   (4918 perm/sec)   p_kst 4.474000e-01   p_cons 4.570000e-01   p_joint 5.833000e-01

Outputting figure to mutsig2_images.part000000000002/ABR.5_2811_10000_0.4474_0.457_0.5833.png
                gene_name: ABR
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 15 percent done.
ACAD10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.210789e-02	ci left: 4.543870e-01	ci right 4.740339e-01	k: 4642	n:10000
Cons ci ratio: 5.503222e-02	ci left: 3.272376e-01	ci right 3.458577e-01	k: 3365	n:10000
KS ci ratio: 4.911865e-02	ci left: 3.794282e-01	ci right 3.986365e-01	k: 3890	n:10000
ACAD10   10000 perm   2 sec   (4974 perm/sec)   p_kst 3.890000e-01   p_cons 3.365000e-01   p_joint 4.642000e-01

Outputting figure to mutsig2_images.part000000000002/ACAD10.5_3357_10000_0.389_0.3365_0.4642.png
                gene_name: ACAD10
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 17 percent done.
ACCN5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.330595e-02	ci left: 5.709563e-01	ci right 5.903967e-01	k: 5807	n:10000
Cons ci ratio: 4.764275e-02	ci left: 3.939633e-01	ci right 4.132929e-01	k: 4036	n:10000
KS ci ratio: 4.185486e-02	ci left: 4.573820e-01	ci right 4.770371e-01	k: 4672	n:10000
ACCN5   10000 perm   2 sec   (5195 perm/sec)   p_kst 4.672000e-01   p_cons 4.036000e-01   p_joint 5.807000e-01

Outputting figure to mutsig2_images.part000000000002/ACCN5.5_1558_10000_0.4672_0.4036_0.5807.png
                gene_name: ACCN5
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 19 percent done.
ACCSL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.939738e-02	ci left: 6.305025e-01	ci right 6.494159e-01	k: 6400	n:10000
Cons ci ratio: 4.834243e-02	ci left: 3.869933e-01	ci right 4.062670e-01	k: 3966	n:10000
KS ci ratio: 1.985756e-02	ci left: 7.877635e-01	ci right 8.036639e-01	k: 7958	n:10000
ACCSL   10000 perm   2 sec   (5093 perm/sec)   p_kst 7.958000e-01   p_cons 3.966000e-01   p_joint 6.400000e-01

Outputting figure to mutsig2_images.part000000000002/ACCSL.5_1763_10000_0.7958_0.3966_0.64.png
                gene_name: ACCSL
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 21 percent done.
ACOX3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.226371e-02	ci left: 7.475594e-01	ci right 7.644912e-01	k: 7561	n:10000
KS ci ratio: 2.648848e-02	ci left: 6.773041e-01	ci right 6.955872e-01	k: 6865	n:10000
ACOX3   10000 perm   2 sec   (5146 perm/sec)   p_kst 6.865000e-01   p_cons 7.561000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000002/ACOX3.5_2171_10000_0.6865_0.7561_1.png
                gene_name: ACOX3
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 23 percent done.
ABRA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.689143e-01	ci left: 4.676942e-02	ci right 5.549443e-02	k: 510	n:10000
Cons ci ratio: 1.214801e-01	ci left: 8.854359e-02	ci right 1.000940e-01	k: 942	n:10000
KS ci ratio: 1.653637e-01	ci left: 4.878580e-02	ci right 5.767674e-02	k: 531	n:10000
ABRA   10000 perm   2 sec   (5786 perm/sec)   p_kst 5.310000e-02   p_cons 9.420000e-02   p_joint 5.100000e-02

Joint ci ratio: 1.656068e-01	ci left: 2.498955e-02	ci right 2.954929e-02	k: 544	n:20000
Cons ci ratio: 8.625504e-02	ci left: 8.954852e-02	ci right 9.767008e-02	k: 1871	n:20000
KS ci ratio: 1.198764e-01	ci left: 4.770004e-02	ci right 5.383140e-02	k: 1014	n:20000
ABRA   20000 perm   4 sec   (5142 perm/sec)   p_kst 5.070000e-02   p_cons 9.355000e-02   p_joint 2.720000e-02

Joint ci ratio: 1.254227e-01	ci left: 2.955233e-02	ci right 3.353907e-02	k: 945	n:30000
Cons ci ratio: 6.998830e-02	ci left: 9.134379e-02	ci right 9.800161e-02	k: 2839	n:30000
KS ci ratio: 9.782863e-02	ci left: 4.830953e-02	ci right 5.331125e-02	k: 1523	n:30000
ABRA   30000 perm   6 sec   (4884 perm/sec)   p_kst 5.076667e-02   p_cons 9.463333e-02   p_joint 3.150000e-02

Joint ci ratio: 9.875102e-02	ci left: 3.602539e-02	ci right 3.979208e-02	k: 1515	n:40000
Cons ci ratio: 6.074186e-02	ci left: 9.142841e-02	ci right 9.718064e-02	k: 3771	n:40000
KS ci ratio: 8.392051e-02	ci left: 4.955022e-02	ci right 5.391514e-02	k: 2068	n:40000
ABRA   40000 perm   8 sec   (4715 perm/sec)   p_kst 5.170000e-02   p_cons 9.427500e-02   p_joint 3.787500e-02

Outputting figure to mutsig2_images.part000000000002/ABRA.4_1154_40000_0.0517_0.094275_0.037875.png
                gene_name: ABRA
               theta_stop: 0.099 
                    nperm: 40000 
                     p_ks: 0.052 
        ci_ks_bounds_left: 0.050 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.094 
      ci_cons_bounds_left: 0.091 
     ci_cons_bounds_right: 0.097 
                  p_joint: 0.038 
     ci_joint_bounds_left: 0.036 
    ci_joint_bounds_right: 0.040 

Current progress: 25 percent done.
ACCN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.770819e-02	ci left: 6.574640e-01	ci right 6.760388e-01	k: 6668	n:10000
Cons ci ratio: 7.213041e-02	ci left: 2.197085e-01	ci right 2.362502e-01	k: 2279	n:10000
KS ci ratio: 3.988200e-02	ci left: 4.814554e-01	ci right 5.011497e-01	k: 4913	n:10000
ACCN4   10000 perm   2 sec   (5073 perm/sec)   p_kst 4.913000e-01   p_cons 2.279000e-01   p_joint 6.668000e-01

Outputting figure to mutsig2_images.part000000000002/ACCN4.4_2041_10000_0.4913_0.2279_0.6668.png
                gene_name: ACCN4
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 26 percent done.
ACE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.356124e-02	ci left: 7.258284e-01	ci right 7.432348e-01	k: 7346	n:10000
KS ci ratio: 7.873806e-03	ci left: 9.573329e-01	ci right 9.649955e-01	k: 9613	n:10000
ACE   10000 perm   2 sec   (4251 perm/sec)   p_kst 9.613000e-01   p_cons 7.346000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000002/ACE.4_4224_10000_0.9613_0.7346_1.png
                gene_name: ACE
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 28 percent done.
ACRC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.728790e-02	ci left: 3.096702e-01	ci right 3.280354e-01	k: 3188	n:10000
Cons ci ratio: 1.395808e-01	ci left: 6.797633e-02	ci right 7.827401e-02	k: 730	n:10000
KS ci ratio: 1.759750e-02	ci left: 8.248311e-01	ci right 8.395749e-01	k: 8323	n:10000
ACRC   10000 perm   2 sec   (5108 perm/sec)   p_kst 8.323000e-01   p_cons 7.300000e-02   p_joint 3.188000e-01

Joint ci ratio: 4.896280e-02	ci left: 2.367216e-01	ci right 2.486533e-01	k: 4853	n:20000
Cons ci ratio: 1.011475e-01	ci left: 6.630631e-02	ci right 7.341936e-02	k: 1396	n:20000
KS ci ratio: 1.274240e-02	ci left: 8.202183e-01	ci right 8.307868e-01	k: 16511	n:20000
ACRC   20000 perm   4 sec   (4641 perm/sec)   p_kst 8.255500e-01   p_cons 6.980000e-02   p_joint 2.426500e-01

Joint ci ratio: 3.474193e-02	ci left: 2.927280e-01	ci right 3.031112e-01	k: 8937	n:30000
Cons ci ratio: 8.240762e-02	ci left: 6.723595e-02	ci right 7.304763e-02	k: 2103	n:30000
KS ci ratio: 9.818961e-03	ci left: 8.374187e-01	ci right 8.457150e-01	k: 25248	n:30000
ACRC   30000 perm   7 sec   (4448 perm/sec)   p_kst 8.416000e-01   p_cons 7.010000e-02   p_joint 2.979000e-01

Outputting figure to mutsig2_images.part000000000002/ACRC.4_2124_30000_0.8416_0.0701_0.2979.png
                gene_name: ACRC
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.070 
      ci_cons_bounds_left: 0.067 
     ci_cons_bounds_right: 0.073 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 30 percent done.
ABL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.961172e-02	ci left: 4.848535e-01	ci right 5.045496e-01	k: 4947	n:10000
Cons ci ratio: 2.877516e-02	ci left: 6.403578e-01	ci right 6.591549e-01	k: 6498	n:10000
KS ci ratio: 4.921176e-02	ci left: 3.785325e-01	ci right 3.977327e-01	k: 3881	n:10000
ABL1   10000 perm   2 sec   (4781 perm/sec)   p_kst 3.881000e-01   p_cons 6.498000e-01   p_joint 4.947000e-01

Outputting figure to mutsig2_images.part000000000002/ABL1.3_3577_10000_0.3881_0.6498_0.4947.png
                gene_name: ABL1
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 32 percent done.
ABLIM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.309443e-02	ci left: 5.740655e-01	ci right 5.934856e-01	k: 5838	n:10000
Cons ci ratio: 2.984537e-02	ci left: 6.234656e-01	ci right 6.424569e-01	k: 6330	n:10000
KS ci ratio: 5.368008e-02	ci left: 3.383613e-01	ci right 3.571274e-01	k: 3477	n:10000
ABLIM3   10000 perm   2 sec   (5683 perm/sec)   p_kst 3.477000e-01   p_cons 6.330000e-01   p_joint 5.838000e-01

Outputting figure to mutsig2_images.part000000000002/ABLIM3.3_2144_10000_0.3477_0.633_0.5838.png
                gene_name: ABLIM3
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 34 percent done.
ABTB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.102432e-03	ci left: 9.646769e-01	ci right 9.716469e-01	k: 9683	n:10000
KS ci ratio: 1.131927e-02	ci left: 9.177038e-01	ci right 9.282482e-01	k: 9231	n:10000
ABTB2   10000 perm   2 sec   (5780 perm/sec)   p_kst 9.231000e-01   p_cons 9.683000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000002/ABTB2.3_2588_10000_0.9231_0.9683_1.png
                gene_name: ABTB2
               theta_stop: 0.011 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 36 percent done.
ACAD9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.013191e-03	ci left: 9.813449e-01	ci right 9.863675e-01	k: 9840	n:10000
KS ci ratio: 8.790262e-03	ci left: 9.478349e-01	ci right 9.562992e-01	k: 9522	n:10000
ACAD9   10000 perm   2 sec   (5687 perm/sec)   p_kst 9.522000e-01   p_cons 9.840000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000002/ACAD9.3_1938_10000_0.9522_0.984_1.png
                gene_name: ACAD9
               theta_stop: 0.0088 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 38 percent done.
ACCN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.640311e-02	ci left: 3.164175e-01	ci right 3.348842e-01	k: 3256	n:10000
Cons ci ratio: 3.299920e-02	ci left: 5.754698e-01	ci right 5.948805e-01	k: 5852	n:10000
KS ci ratio: 8.205725e-02	ci left: 1.781208e-01	ci right 1.934627e-01	k: 1857	n:10000
ACCN2   10000 perm   2 sec   (6237 perm/sec)   p_kst 1.857000e-01   p_cons 5.852000e-01   p_joint 3.256000e-01

Outputting figure to mutsig2_images.part000000000002/ACCN2.3_1769_10000_0.1857_0.5852_0.3256.png
                gene_name: ACCN2
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 40 percent done.
ACCN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.683541e-02	ci left: 5.211612e-01	ci right 5.408207e-01	k: 5310	n:10000
Cons ci ratio: 8.271402e-02	ci left: 1.757597e-01	ci right 1.910252e-01	k: 1833	n:10000
KS ci ratio: 2.241456e-02	ci left: 7.450311e-01	ci right 7.620210e-01	k: 7536	n:10000
ACCN3   10000 perm   2 sec   (5957 perm/sec)   p_kst 7.536000e-01   p_cons 1.833000e-01   p_joint 5.310000e-01

Outputting figure to mutsig2_images.part000000000002/ACCN3.3_1755_10000_0.7536_0.1833_0.531.png
                gene_name: ACCN3
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 42 percent done.
ACCS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.028186e-01	ci left: 1.203376e-01	ci right 1.334806e-01	k: 1268	n:10000
Cons ci ratio: 7.681687e-02	ci left: 1.986025e-01	ci right 2.145687e-01	k: 2065	n:10000
KS ci ratio: 9.611774e-02	ci left: 1.357035e-01	ci right 1.495054e-01	k: 1425	n:10000
ACCS   10000 perm   2 sec   (6452 perm/sec)   p_kst 1.425000e-01   p_cons 2.065000e-01   p_joint 1.268000e-01

Joint ci ratio: 6.154084e-02	ci left: 1.634346e-01	ci right 1.738619e-01	k: 3372	n:20000
Cons ci ratio: 5.475291e-02	ci left: 1.983841e-01	ci right 2.096021e-01	k: 4079	n:20000
KS ci ratio: 6.800836e-02	ci left: 1.375841e-01	ci right 1.473201e-01	k: 2848	n:20000
ACCS   20000 perm   4 sec   (5623 perm/sec)   p_kst 1.424000e-01   p_cons 2.039500e-01   p_joint 1.686000e-01

Outputting figure to mutsig2_images.part000000000002/ACCS.3_1562_20000_0.1424_0.20395_0.1686.png
                gene_name: ACCS
               theta_stop: 0.068 
                    nperm: 20000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 43 percent done.
ACE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.847191e-02	ci left: 4.994504e-01	ci right 5.191442e-01	k: 5093	n:10000
Cons ci ratio: 3.198321e-02	ci left: 5.906213e-01	ci right 6.099202e-01	k: 6003	n:10000
KS ci ratio: 4.685049e-02	ci left: 4.020311e-01	ci right 4.214204e-01	k: 4117	n:10000
ACE2   10000 perm   2 sec   (5369 perm/sec)   p_kst 4.117000e-01   p_cons 6.003000e-01   p_joint 5.093000e-01

Outputting figure to mutsig2_images.part000000000002/ACE2.3_2490_10000_0.4117_0.6003_0.5093.png
                gene_name: ACE2
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 45 percent done.
ACHE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.090944e-02	ci left: 1.823522e-01	ci right 1.978288e-01	k: 1900	n:10000
Cons ci ratio: 6.083299e-02	ci left: 2.843880e-01	ci right 3.023325e-01	k: 2933	n:10000
KS ci ratio: 1.304623e-01	ci left: 7.737381e-02	ci right 8.827067e-02	k: 827	n:10000
ACHE   10000 perm   2 sec   (5783 perm/sec)   p_kst 8.270000e-02   p_cons 2.933000e-01   p_joint 1.900000e-01

Joint ci ratio: 7.148428e-02	ci left: 1.260082e-01	ci right 1.353995e-01	k: 2613	n:20000
Cons ci ratio: 4.278847e-02	ci left: 2.892313e-01	ci right 3.019281e-01	k: 5911	n:20000
KS ci ratio: 9.150171e-02	ci left: 8.019134e-02	ci right 8.793009e-02	k: 1680	n:20000
ACHE   20000 perm   4 sec   (5069 perm/sec)   p_kst 8.400000e-02   p_cons 2.955500e-01   p_joint 1.306500e-01

Outputting figure to mutsig2_images.part000000000002/ACHE.3_1996_20000_0.084_0.29555_0.13065.png
                gene_name: ACHE
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.084 
        ci_ks_bounds_left: 0.080 
       ci_ks_bounds_right: 0.088 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 47 percent done.
ACO2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.052124e-02	ci left: 3.661952e-01	ci right 3.852773e-01	k: 3757	n:10000
Cons ci ratio: 2.075816e-02	ci left: 7.727630e-01	ci right 7.890731e-01	k: 7810	n:10000
KS ci ratio: 6.494961e-02	ci left: 2.582492e-01	ci right 2.756868e-01	k: 2669	n:10000
ACO2   10000 perm   2 sec   (5897 perm/sec)   p_kst 2.669000e-01   p_cons 7.810000e-01   p_joint 3.757000e-01

Outputting figure to mutsig2_images.part000000000002/ACO2.3_2415_10000_0.2669_0.781_0.3757.png
                gene_name: ACO2
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 49 percent done.
ACOT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.568773e-02	ci left: 1.367812e-01	ci right 1.506270e-01	k: 1436	n:10000
Cons ci ratio: 1.226434e-02	ci left: 9.051459e-01	ci right 9.164135e-01	k: 9109	n:10000
KS ci ratio: 1.385609e-01	ci left: 6.894400e-02	ci right 7.930573e-02	k: 740	n:10000
ACOT2   10000 perm   2 sec   (6119 perm/sec)   p_kst 7.400000e-02   p_cons 9.109000e-01   p_joint 1.436000e-01

Joint ci ratio: 4.203522e-02	ci left: 2.966350e-01	ci right 3.094223e-01	k: 6060	n:20000
Cons ci ratio: 8.514920e-03	ci left: 9.098249e-01	ci right 9.176543e-01	k: 18276	n:20000
KS ci ratio: 9.451095e-02	ci left: 7.544481e-02	ci right 8.297806e-02	k: 1583	n:20000
ACOT2   20000 perm   4 sec   (5341 perm/sec)   p_kst 7.915000e-02   p_cons 9.138000e-01   p_joint 3.030000e-01

Outputting figure to mutsig2_images.part000000000002/ACOT2.3_1464_20000_0.07915_0.9138_0.303.png
                gene_name: ACOT2
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.079 
        ci_ks_bounds_left: 0.075 
       ci_ks_bounds_right: 0.083 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 51 percent done.
ACOT8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.707269e-02	ci left: 5.179584e-01	ci right 5.376254e-01	k: 5278	n:10000
Cons ci ratio: 2.522196e-02	ci left: 6.981718e-01	ci right 7.161074e-01	k: 7072	n:10000
KS ci ratio: 4.844356e-02	ci left: 3.859978e-01	ci right 4.052631e-01	k: 3956	n:10000
ACOT8   10000 perm   2 sec   (6177 perm/sec)   p_kst 3.956000e-01   p_cons 7.072000e-01   p_joint 5.278000e-01

Outputting figure to mutsig2_images.part000000000002/ACOT8.3_984_10000_0.3956_0.7072_0.5278.png
                gene_name: ACOT8
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 53 percent done.
ACOXL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.631636e-02	ci left: 6.801255e-01	ci right 6.983641e-01	k: 6893	n:10000
Cons ci ratio: 4.801080e-02	ci left: 3.902789e-01	ci right 4.095794e-01	k: 3999	n:10000
KS ci ratio: 1.421012e-02	ci left: 8.774593e-01	ci right 8.901162e-01	k: 8839	n:10000
ACOXL   10000 perm   2 sec   (5879 perm/sec)   p_kst 8.839000e-01   p_cons 3.999000e-01   p_joint 6.893000e-01

Outputting figure to mutsig2_images.part000000000002/ACOXL.3_1811_10000_0.8839_0.3999_0.6893.png
                gene_name: ACOXL
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 55 percent done.
ACPL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.692793e-02	ci left: 4.012342e-01	ci right 4.206178e-01	k: 4109	n:10000
Cons ci ratio: 8.383558e-02	ci left: 1.718257e-01	ci right 1.869615e-01	k: 1793	n:10000
KS ci ratio: 4.340871e-02	ci left: 4.393171e-01	ci right 4.589126e-01	k: 4491	n:10000
ACPL2   10000 perm   2 sec   (5843 perm/sec)   p_kst 4.491000e-01   p_cons 1.793000e-01   p_joint 4.109000e-01

Outputting figure to mutsig2_images.part000000000002/ACPL2.3_1463_10000_0.4491_0.1793_0.4109.png
                gene_name: ACPL2
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 57 percent done.
ACSF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.121662e-02	ci left: 2.818121e-01	ci right 2.997100e-01	k: 2907	n:10000
Cons ci ratio: 6.996660e-02	ci left: 2.304707e-01	ci right 2.472817e-01	k: 2388	n:10000
KS ci ratio: 8.409273e-02	ci left: 1.709408e-01	ci right 1.860470e-01	k: 1784	n:10000
ACSF3   10000 perm   2 sec   (5994 perm/sec)   p_kst 1.784000e-01   p_cons 2.388000e-01   p_joint 2.907000e-01

Outputting figure to mutsig2_images.part000000000002/ACSF3.3_1767_10000_0.1784_0.2388_0.2907.png
                gene_name: ACSF3
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 58 percent done.
ABLIM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.376300e-02	ci left: 3.376659e-01	ci right 3.564232e-01	k: 3470	n:10000
KS ci ratio: 8.502186e-02	ci left: 1.677948e-01	ci right 1.827948e-01	k: 1752	n:10000
ABLIM1   10000 perm   2 sec   (5859 perm/sec)   p_kst 1.752000e-01   p_cons 3.470000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000002/ABLIM1.2_2581_10000_0.1752_0.347_1.png
                gene_name: ABLIM1
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 60 percent done.
ABLIM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.628610e-03	ci left: 9.896106e-01	ci right 9.932945e-01	k: 9916	n:10000
Cons ci ratio: 5.169162e-03	ci left: 9.802710e-01	ci right 9.854422e-01	k: 9830	n:10000
KS ci ratio: 6.918678e-02	ci left: 2.345208e-01	ci right 2.514292e-01	k: 2429	n:10000
ABLIM2   10000 perm   2 sec   (5823 perm/sec)   p_kst 2.429000e-01   p_cons 9.830000e-01   p_joint 9.916000e-01

Outputting figure to mutsig2_images.part000000000002/ABLIM2.2_2076_10000_0.2429_0.983_0.9916.png
                gene_name: ABLIM2
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 62 percent done.
ACACA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.133519e-02	ci left: 9.174977e-01	ci right 9.280545e-01	k: 9229	n:10000
Cons ci ratio: 1.947207e-02	ci left: 7.941537e-01	ci right 8.098700e-01	k: 8021	n:10000
KS ci ratio: 1.828014e-02	ci left: 8.137498e-01	ci right 8.288626e-01	k: 8214	n:10000
ACACA   10000 perm   3 sec   (3795 perm/sec)   p_kst 8.214000e-01   p_cons 8.021000e-01   p_joint 9.229000e-01

Outputting figure to mutsig2_images.part000000000002/ACACA.2_7433_10000_0.8214_0.8021_0.9229.png
                gene_name: ACACA
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 64 percent done.
ACAD11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.091580e-02	ci left: 7.701294e-01	ci right 7.865082e-01	k: 7784	n:10000
KS ci ratio: 3.183017e-02	ci left: 5.929300e-01	ci right 6.122102e-01	k: 6026	n:10000
ACAD11   10000 perm   2 sec   (5706 perm/sec)   p_kst 6.026000e-01   p_cons 7.784000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000002/ACAD11.2_2423_10000_0.6026_0.7784_1.png
                gene_name: ACAD11
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 66 percent done.
ACAD8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.020604e-02	ci left: 6.178376e-01	ci right 6.368881e-01	k: 6274	n:10000
KS ci ratio: 3.001256e-02	ci left: 6.208524e-01	ci right 6.398716e-01	k: 6304	n:10000
ACAD8   10000 perm   2 sec   (6386 perm/sec)   p_kst 6.304000e-01   p_cons 6.274000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000002/ACAD8.2_1292_10000_0.6304_0.6274_1.png
                gene_name: ACAD8
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
ACADL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.375241e-02	ci left: 4.354264e-01	ci right 4.550056e-01	k: 4452	n:10000
Cons ci ratio: 3.120255e-02	ci left: 6.024681e-01	ci right 6.216665e-01	k: 6121	n:10000
KS ci ratio: 8.069985e-02	ci left: 1.831396e-01	ci right 1.986409e-01	k: 1908	n:10000
ACADL   10000 perm   2 sec   (6313 perm/sec)   p_kst 1.908000e-01   p_cons 6.121000e-01   p_joint 4.452000e-01

Outputting figure to mutsig2_images.part000000000002/ACADL.2_1337_10000_0.1908_0.6121_0.4452.png
                gene_name: ACADL
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 70 percent done.
ACADS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.331842e-02	ci left: 2.140838e-01	ci right 2.304783e-01	k: 2222	n:10000
KS ci ratio: 2.431726e-02	ci left: 7.132062e-01	ci right 7.308642e-01	k: 7221	n:10000
ACADS   10000 perm   2 sec   (6367 perm/sec)   p_kst 7.221000e-01   p_cons 2.222000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000002/ACADS.2_1279_10000_0.7221_0.2222_1.png
                gene_name: ACADS
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
ACAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.355343e-03	ci left: 9.855591e-01	ci right 9.899499e-01	k: 9879	n:10000
Cons ci ratio: 3.393222e-02	ci left: 5.618315e-01	ci right 5.813268e-01	k: 5716	n:10000
KS ci ratio: 5.710380e-02	ci left: 3.110592e-01	ci right 3.294457e-01	k: 3202	n:10000
ACAP2   10000 perm   2 sec   (5721 perm/sec)   p_kst 3.202000e-01   p_cons 5.716000e-01   p_joint 9.879000e-01

Outputting figure to mutsig2_images.part000000000002/ACAP2.2_2429_10000_0.3202_0.5716_0.9879.png
                gene_name: ACAP2
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 74 percent done.
ACAT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.036364e-02	ci left: 4.754599e-01	ci right 4.951487e-01	k: 4853	n:10000
KS ci ratio: 2.704372e-02	ci left: 6.682378e-01	ci right 6.866587e-01	k: 6775	n:10000
ACAT1   10000 perm   2 sec   (6374 perm/sec)   p_kst 6.775000e-01   p_cons 4.853000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000002/ACAT1.2_1332_10000_0.6775_0.4853_1.png
                gene_name: ACAT1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
ACBD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.563461e-03	ci left: 9.899424e-01	ci right 9.935624e-01	k: 9919	n:10000
Cons ci ratio: 4.964965e-02	ci left: 3.743530e-01	ci right 3.935147e-01	k: 3839	n:10000
KS ci ratio: 1.652740e-02	ci left: 8.419327e-01	ci right 8.560633e-01	k: 8491	n:10000
ACBD3   10000 perm   2 sec   (6336 perm/sec)   p_kst 8.491000e-01   p_cons 3.839000e-01   p_joint 9.919000e-01

Outputting figure to mutsig2_images.part000000000002/ACBD3.2_1619_10000_0.8491_0.3839_0.9919.png
                gene_name: ACBD3
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 77 percent done.
ACBD5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.098128e-02	ci left: 9.220356e-01	ci right 9.323139e-01	k: 9273	n:10000
KS ci ratio: 3.036125e-02	ci left: 6.154261e-01	ci right 6.345011e-01	k: 6250	n:10000
ACBD5   10000 perm   2 sec   (6191 perm/sec)   p_kst 6.250000e-01   p_cons 9.273000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000002/ACBD5.2_1630_10000_0.625_0.9273_1.png
                gene_name: ACBD5
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
ACER2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.044849e-02	ci left: 7.779303e-01	ci right 7.941028e-01	k: 7861	n:10000
Cons ci ratio: 4.233711e-02	ci left: 4.516917e-01	ci right 4.713307e-01	k: 4615	n:10000
KS ci ratio: 2.372437e-02	ci left: 7.231012e-01	ci right 7.405635e-01	k: 7319	n:10000
ACER2   10000 perm   2 sec   (6659 perm/sec)   p_kst 7.319000e-01   p_cons 4.615000e-01   p_joint 7.861000e-01

Outputting figure to mutsig2_images.part000000000002/ACER2.2_852_10000_0.7319_0.4615_0.7861.png
                gene_name: ACER2
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.79 

Current progress: 81 percent done.
ACIN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.573437e-02	ci left: 1.654360e-01	ci right 1.803551e-01	k: 1728	n:10000
Cons ci ratio: 9.152397e-02	ci left: 1.478599e-01	ci right 1.621417e-01	k: 1549	n:10000
KS ci ratio: 7.672327e-02	ci left: 1.989967e-01	ci right 2.149743e-01	k: 2069	n:10000
ACIN1   10000 perm   2 sec   (4972 perm/sec)   p_kst 2.069000e-01   p_cons 1.549000e-01   p_joint 1.728000e-01

Outputting figure to mutsig2_images.part000000000002/ACIN1.2_4249_10000_0.2069_0.1549_0.1728.png
                gene_name: ACIN1
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 83 percent done.
ACO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.665611e-02	ci left: 8.398953e-01	ci right 8.541019e-01	k: 8471	n:10000
KS ci ratio: 7.735548e-03	ci left: 9.586940e-01	ci right 9.662336e-01	k: 9626	n:10000
ACO1   10000 perm   2 sec   (5430 perm/sec)   p_kst 9.626000e-01   p_cons 8.471000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000002/ACO1.2_2750_10000_0.9626_0.8471_1.png
                gene_name: ACO1
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 85 percent done.
ACOT7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.346742e-01	ci left: 7.281740e-02	ci right 8.342992e-02	k: 780	n:10000
Cons ci ratio: 1.325683e-01	ci left: 7.504646e-02	ci right 8.579947e-02	k: 803	n:10000
KS ci ratio: 6.038129e-02	ci left: 2.874598e-01	ci right 3.054589e-01	k: 2964	n:10000
ACOT7   10000 perm   2 sec   (6421 perm/sec)   p_kst 2.964000e-01   p_cons 8.030000e-02   p_joint 7.800000e-02

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 7.627586e-02	ci left: 1.121830e-01	ci right 1.211288e-01	k: 2332	n:20000
KS ci ratio: 4.354540e-02	ci left: 2.820284e-01	ci right 2.946332e-01	k: 5766	n:20000
ACOT7   20000 perm   4 sec   (5628 perm/sec)   p_kst 2.883000e-01   p_cons 1.166000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000002/ACOT7.2_1437_20000_0.2883_0.1166_1.png
                gene_name: ACOT7
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
ACOX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.272810e-02	ci left: 5.794826e-01	ci right 5.988655e-01	k: 5892	n:10000
Cons ci ratio: 2.878780e-02	ci left: 6.401566e-01	ci right 6.589562e-01	k: 6496	n:10000
KS ci ratio: 3.858751e-02	ci left: 4.979503e-01	ci right 5.176452e-01	k: 5078	n:10000
ACOX1   10000 perm   2 sec   (5710 perm/sec)   p_kst 5.078000e-01   p_cons 6.496000e-01   p_joint 5.892000e-01

Outputting figure to mutsig2_images.part000000000002/ACOX1.2_2204_10000_0.5078_0.6496_0.5892.png
                gene_name: ACOX1
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 89 percent done.
ACP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.457464e-03	ci left: 9.513780e-01	ci right 9.595540e-01	k: 9556	n:10000
Cons ci ratio: 7.859457e-02	ci left: 1.913119e-01	ci right 2.070637e-01	k: 1991	n:10000
KS ci ratio: 3.906111e-02	ci left: 4.918509e-01	ci right 5.115481e-01	k: 5017	n:10000
ACP1   10000 perm   1 sec   (7101 perm/sec)   p_kst 5.017000e-01   p_cons 1.991000e-01   p_joint 9.556000e-01

Outputting figure to mutsig2_images.part000000000002/ACP1.2_656_10000_0.5017_0.1991_0.9556.png
                gene_name: ACP1
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 91 percent done.
ACP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.680851e-02	ci left: 2.474683e-01	ci right 2.646740e-01	k: 2560	n:10000
Cons ci ratio: 7.755077e-02	ci left: 1.955478e-01	ci right 2.114253e-01	k: 2034	n:10000
KS ci ratio: 4.090057e-02	ci left: 4.688665e-01	ci right 4.885459e-01	k: 4787	n:10000
ACP6   10000 perm   2 sec   (6600 perm/sec)   p_kst 4.787000e-01   p_cons 2.034000e-01   p_joint 2.560000e-01

Outputting figure to mutsig2_images.part000000000002/ACP6.2_1327_10000_0.4787_0.2034_0.256.png
                gene_name: ACP6
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 92 percent done.
ACSL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.486641e-02	ci left: 8.676433e-01	ci right 8.807378e-01	k: 8743	n:10000
KS ci ratio: 6.877557e-02	ci left: 2.366945e-01	ci right 2.536542e-01	k: 2451	n:10000
ACSL1   10000 perm   2 sec   (5778 perm/sec)   p_kst 2.451000e-01   p_cons 8.743000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000002/ACSL1.2_2177_10000_0.2451_0.8743_1.png
                gene_name: ACSL1
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
ACSL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.062743e-02	ci left: 9.264756e-01	ci right 9.364713e-01	k: 9316	n:10000
Cons ci ratio: 2.269812e-02	ci left: 7.402790e-01	ci right 7.573759e-01	k: 7489	n:10000
KS ci ratio: 2.397830e-02	ci left: 7.188599e-01	ci right 7.364073e-01	k: 7277	n:10000
ACSL3   10000 perm   2 sec   (5714 perm/sec)   p_kst 7.277000e-01   p_cons 7.489000e-01   p_joint 9.316000e-01

Outputting figure to mutsig2_images.part000000000002/ACSL3.2_2219_10000_0.7277_0.7489_0.9316.png
                gene_name: ACSL3
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 96 percent done.
ACSL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.564880e-02	ci left: 6.911127e-01	ci right 7.091706e-01	k: 7002	n:10000
Cons ci ratio: 2.249902e-02	ci left: 7.436154e-01	ci right 7.606374e-01	k: 7522	n:10000
KS ci ratio: 2.963379e-02	ci left: 6.267827e-01	ci right 6.457378e-01	k: 6363	n:10000
ACSL4   10000 perm   2 sec   (5606 perm/sec)   p_kst 6.363000e-01   p_cons 7.522000e-01   p_joint 7.002000e-01

Outputting figure to mutsig2_images.part000000000002/ACSL4.2_2192_10000_0.6363_0.7522_0.7002.png
                gene_name: ACSL4
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 98 percent done.
ACSL6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.991607e-02	ci left: 1.524718e-01	ci right 1.669270e-01	k: 1596	n:10000
KS ci ratio: 7.911566e-02	ci left: 1.892437e-01	ci right 2.049332e-01	k: 1970	n:10000
ACSL6   10000 perm   2 sec   (5721 perm/sec)   p_kst 1.970000e-01   p_cons 1.596000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000002/ACSL6.2_2335_10000_0.197_0.1596_1.png
                gene_name: ACSL6
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000002
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 2 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1431>
Subject: Job 8003782: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1431>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000003> was used as the working directory.
Started at Sun Nov 11 15:03:08 2012
Results reported at Sun Nov 11 15:17:35 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000003.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000003.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 3  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000003.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1049.86 sec.
    Max Memory :      4744 MB
    Max Swap   :      7092 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
3
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 3
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 3: processing genes 182 - 271
Calculating significance of each gene.
Using projection method.
182	ACSM1	7.818416e-01
183	ACSM2A	1
184	ACSM2B	4.027254e-04
185	ACSM3	1.231783e-01
186	ACSM4	9.389532e-02
187	ACSM5	1
188	ACSS1	8.668323e-01
189	ACSS2	1
190	ACSS3	2.983689e-02
191	ACTA1	6.252469e-01
192	ACTA2	1
193	ACTB	7.931213e-01
194	ACTBL2	2.591659e-01
195	ACTC1	8.560919e-03
196	ACTG1	5.716881e-01
197	ACTG2	9.316278e-03
198	ACTL6A	1.620411e-01
199	ACTL6B	1
200	ACTL7A	4.940172e-01
201	ACTL7B	1
202	ACTL8	5.273494e-01
203	ACTL9	5.179545e-01
204	ACTN1	8.926517e-01
205	ACTN2	9.478680e-01
206	ACTN3	8.768857e-01
207	ACTN4	3.510418e-01
208	ACTR10	1
209	ACTR1A	7.093695e-01
210	ACTR1B	7.677964e-01
211	ACTR2	1
212	ACTR3	1
213	ACTR3B	7.652597e-01
214	ACTR3C	1
215	ACTR5	1
216	ACTR6	2.289657e-01
217	ACTR8	5.487477e-01
218	ACTRT1	2.490188e-01
219	ACTRT2	9.858500e-02
220	ACVR1	1
221	ACVR1B	3.275937e-01
222	ACVR1C	6.616724e-01
223	ACVR2A	1.848497e-01
224	ACVR2B	1
225	ACVRL1	3.381706e-01
226	ACY1	6.262949e-01
227	ACY3	3.523207e-01
228	ACYP1	1
229	ACYP2	1
230	ADA	1
231	ADAD1	7.418742e-01
232	ADAD2	8.997398e-01
233	ADAL	4.381355e-01
234	ADAM10	3.990759e-01
235	ADAM11	5.172880e-01
236	ADAM12	9.411604e-01
237	ADAM15	1
238	ADAM17	1
239	ADAM18	2.082512e-01
240	ADAM19	9.357913e-01
241	ADAM2	1.010106e-02
242	ADAM20	8.905344e-02
243	ADAM21	5.834571e-02
244	ADAM22	7.928274e-01
245	ADAM23	7.726741e-01
246	ADAM28	1
247	ADAM29	9.062227e-01
248	ADAM30	6.219376e-01
249	ADAM32	1
250	ADAM33	8.467441e-02
251	ADAM7	8.102473e-01
252	ADAM8	6.547584e-01
253	ADAM9	9.337990e-01
254	ADAMDEC1	2.631921e-01
255	ADAMTS1	1
256	ADAMTS10	1
257	ADAMTS12	1.616623e-02
258	ADAMTS13	9.939703e-01
259	ADAMTS14	7.866041e-01
260	ADAMTS15	4.880102e-01
261	ADAMTS16	1
262	ADAMTS17	5.715084e-01
263	ADAMTS18	1.082087e-02
264	ADAMTS19	3.103957e-01
265	ADAMTS2	8.692011e-01
266	ADAMTS20	3.382372e-01
267	ADAMTS3	9.260213e-01
268	ADAMTS4	4.659954e-01
269	ADAMTS5	1
270	ADAMTS6	7.726429e-01
271	ADAMTS7	5.560296e-01
Done

Running MutSig 2:
Scatter job 3: processing genes 182 - 271
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ADAMTS12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.612611e-02	ci left: 6.832497e-01	ci right 7.014381e-01	k: 6924	n:10000
Cons ci ratio: 7.029523e-02	ci left: 2.287917e-01	ci right 2.455617e-01	k: 2371	n:10000
KS ci ratio: 1.968641e-02	ci left: 7.906032e-01	ci right 8.064225e-01	k: 7986	n:10000
ADAMTS12   10000 perm   3 sec   (2898 perm/sec)   p_kst 7.986000e-01   p_cons 2.371000e-01   p_joint 6.924000e-01

Outputting figure to mutsig2_images.part000000000003/ADAMTS12.34_4881_10000_0.7986_0.2371_0.6924.png
                gene_name: ADAMTS12
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 2 percent done.
ADAMTS20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.037097e-01	ci left: 1.184802e-01	ci right 1.315391e-01	k: 1249	n:10000
Cons ci ratio: 6.342511e-02	ci left: 2.675518e-01	ci right 2.851786e-01	k: 2763	n:10000
KS ci ratio: 1.364833e-01	ci left: 7.097701e-02	ci right 8.147145e-02	k: 761	n:10000
ADAMTS20   10000 perm   3 sec   (3171 perm/sec)   p_kst 7.610000e-02   p_cons 2.763000e-01   p_joint 1.249000e-01

Joint ci ratio: 8.454669e-02	ci left: 9.293210e-02	ci right 1.011855e-01	k: 1940	n:20000
Cons ci ratio: 4.349241e-02	ci left: 2.825251e-01	ci right 2.951364e-01	k: 5776	n:20000
KS ci ratio: 9.939914e-02	ci left: 6.855270e-02	ci right 7.577228e-02	k: 1442	n:20000
ADAMTS20   20000 perm   7 sec   (2912 perm/sec)   p_kst 7.210000e-02   p_cons 2.888000e-01   p_joint 9.700000e-02

Outputting figure to mutsig2_images.part000000000003/ADAMTS20.24_5888_20000_0.0721_0.2888_0.097.png
                gene_name: ADAMTS20
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.076 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.097 
     ci_joint_bounds_left: 0.093 
    ci_joint_bounds_right: 0.10 

Current progress: 3 percent done.
ADAMTS16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.409772e-02	ci left: 2.633947e-01	ci right 2.809382e-01	k: 2721	n:10000
Cons ci ratio: 8.499247e-02	ci left: 1.678931e-01	ci right 1.828965e-01	k: 1753	n:10000
KS ci ratio: 8.555495e-02	ci left: 1.660256e-01	ci right 1.809651e-01	k: 1734	n:10000
ADAMTS16   10000 perm   2 sec   (4143 perm/sec)   p_kst 1.734000e-01   p_cons 1.753000e-01   p_joint 2.721000e-01

Outputting figure to mutsig2_images.part000000000003/ADAMTS16.17_3767_10000_0.1734_0.1753_0.2721.png
                gene_name: ADAMTS16
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 5 percent done.
ACSM2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.435966e-02	ci left: 7.124997e-01	ci right 7.301712e-01	k: 7214	n:10000
Cons ci ratio: 4.723945e-02	ci left: 3.980467e-01	ci right 4.174071e-01	k: 4077	n:10000
KS ci ratio: 1.587099e-02	ci left: 8.522284e-01	ci right 8.659617e-01	k: 8592	n:10000
ACSM2B   10000 perm   2 sec   (4733 perm/sec)   p_kst 8.592000e-01   p_cons 4.077000e-01   p_joint 7.214000e-01

Outputting figure to mutsig2_images.part000000000003/ACSM2B.13_1786_10000_0.8592_0.4077_0.7214.png
                gene_name: ACSM2B
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 6 percent done.
ADAM18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.943197e-01	ci left: 3.529041e-02	ci right 4.298104e-02	k: 390	n:10000
Cons ci ratio: 7.995015e-02	ci left: 1.859943e-01	ci right 2.015845e-01	k: 1937	n:10000
KS ci ratio: 2.043162e-01	ci left: 3.186407e-02	ci right 3.920972e-02	k: 354	n:10000
ADAM18   10000 perm   2 sec   (4109 perm/sec)   p_kst 3.540000e-02   p_cons 1.937000e-01   p_joint 3.900000e-02

Joint ci ratio: 8.778979e-02	ci left: 8.665663e-02	ci right 9.466284e-02	k: 1812	n:20000
Cons ci ratio: 5.471080e-02	ci left: 1.986315e-01	ci right 2.098546e-01	k: 4084	n:20000
KS ci ratio: 1.466316e-01	ci left: 3.196523e-02	ci right 3.707126e-02	k: 689	n:20000
ADAM18   20000 perm   5 sec   (3792 perm/sec)   p_kst 3.445000e-02   p_cons 2.042000e-01   p_joint 9.060000e-02

Joint ci ratio: 9.924309e-02	ci left: 4.697490e-02	ci right 5.191282e-02	k: 1482	n:30000
Cons ci ratio: 4.351170e-02	ci left: 2.082791e-01	ci right 2.175766e-01	k: 6387	n:30000
KS ci ratio: 1.186022e-01	ci left: 3.304597e-02	ci right 3.724468e-02	k: 1053	n:30000
ADAM18   30000 perm   8 sec   (3637 perm/sec)   p_kst 3.510000e-02   p_cons 2.129000e-01   p_joint 4.940000e-02

Joint ci ratio: 6.721093e-02	ci left: 7.573475e-02	ci right 8.102665e-02	k: 3134	n:40000
Cons ci ratio: 3.850605e-02	ci left: 2.017974e-01	ci right 2.097454e-01	k: 8230	n:40000
KS ci ratio: 1.039196e-01	ci left: 3.256219e-02	ci right 3.615582e-02	k: 1373	n:40000
ADAM18   40000 perm   11 sec   (3536 perm/sec)   p_kst 3.432500e-02   p_cons 2.057500e-01   p_joint 7.835000e-02

Joint ci ratio: 6.957342e-02	ci left: 5.761919e-02	ci right 6.179211e-02	k: 2984	n:50000
Cons ci ratio: 3.436259e-02	ci left: 2.029590e-01	ci right 2.100751e-01	k: 10325	n:50000
KS ci ratio: 9.262808e-02	ci left: 3.297599e-02	ci right 3.619834e-02	k: 1728	n:50000
ADAM18   50000 perm   14 sec   (3450 perm/sec)   p_kst 3.456000e-02   p_cons 2.065000e-01   p_joint 5.968000e-02

Outputting figure to mutsig2_images.part000000000003/ADAM18.13_2300_50000_0.03456_0.2065_0.05968.png
                gene_name: ADAM18
               theta_stop: 0.093 
                    nperm: 50000 
                     p_ks: 0.035 
        ci_ks_bounds_left: 0.033 
       ci_ks_bounds_right: 0.036 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.060 
     ci_joint_bounds_left: 0.058 
    ci_joint_bounds_right: 0.062 

Current progress: 8 percent done.
ADAM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.086698e-02	ci left: 9.234805e-01	ci right 9.336681e-01	k: 9287	n:10000
KS ci ratio: 1.520918e-02	ci left: 8.624338e-01	ci right 8.757504e-01	k: 8692	n:10000
ADAM2   10000 perm   2 sec   (4234 perm/sec)   p_kst 8.692000e-01   p_cons 9.287000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000003/ADAM2.12_2288_10000_0.8692_0.9287_1.png
                gene_name: ADAM2
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 9 percent done.
ADAMTS18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.002993e-01	ci left: 1.258149e-01	ci right 1.391999e-01	k: 1324	n:10000
Cons ci ratio: 7.221246e-02	ci left: 2.193138e-01	ci right 2.358452e-01	k: 2275	n:10000
KS ci ratio: 1.388648e-01	ci left: 6.865367e-02	ci right 7.899624e-02	k: 737	n:10000
ADAMTS18   10000 perm   3 sec   (3996 perm/sec)   p_kst 7.370000e-02   p_cons 2.275000e-01   p_joint 1.324000e-01

Joint ci ratio: 5.573271e-02	ci left: 1.927438e-01	ci right 2.038440e-01	k: 3965	n:20000
Cons ci ratio: 5.067345e-02	ci left: 2.244300e-01	ci right 2.361485e-01	k: 4605	n:20000
KS ci ratio: 9.709772e-02	ci left: 7.167988e-02	ci right 7.904415e-02	k: 1506	n:20000
ADAMTS18   20000 perm   5 sec   (3731 perm/sec)   p_kst 7.530000e-02   p_cons 2.302500e-01   p_joint 1.982500e-01

Outputting figure to mutsig2_images.part000000000003/ADAMTS18.11_3758_20000_0.0753_0.23025_0.19825.png
                gene_name: ADAMTS18
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.075 
        ci_ks_bounds_left: 0.072 
       ci_ks_bounds_right: 0.079 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 11 percent done.
ADAMTS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.576830e-01	ci left: 5.359424e-02	ci right 6.286520e-02	k: 581	n:10000
Cons ci ratio: 6.689629e-02	ci left: 2.469740e-01	ci right 2.641687e-01	k: 2555	n:10000
KS ci ratio: 1.972249e-01	ci left: 3.424249e-02	ci right 4.182967e-02	k: 379	n:10000
ADAMTS3   10000 perm   2 sec   (4308 perm/sec)   p_kst 3.790000e-02   p_cons 2.555000e-01   p_joint 5.810000e-02

Joint ci ratio: 1.110461e-01	ci left: 5.538421e-02	ci right 6.194483e-02	k: 1172	n:20000
Cons ci ratio: 4.817661e-02	ci left: 2.426716e-01	ci right 2.547016e-01	k: 4973	n:20000
KS ci ratio: 1.414078e-01	ci left: 3.437815e-02	ci right 3.965756e-02	k: 739	n:20000
ADAMTS3   20000 perm   5 sec   (3899 perm/sec)   p_kst 3.695000e-02   p_cons 2.486500e-01   p_joint 5.860000e-02

Joint ci ratio: 7.604441e-02	ci left: 7.826417e-02	ci right 8.448386e-02	k: 2440	n:30000
Cons ci ratio: 3.759505e-02	ci left: 2.609730e-01	ci right 2.710057e-01	k: 7979	n:30000
KS ci ratio: 1.151371e-01	ci left: 3.505430e-02	ci right 3.936925e-02	k: 1115	n:30000
ADAMTS3   30000 perm   8 sec   (3755 perm/sec)   p_kst 3.716667e-02   p_cons 2.659667e-01   p_joint 8.133333e-02

Joint ci ratio: 7.035225e-02	ci left: 6.948550e-02	ci right 7.457684e-02	k: 2880	n:40000
Cons ci ratio: 3.456801e-02	ci left: 2.390517e-01	ci right 2.474856e-01	k: 9730	n:40000
KS ci ratio: 1.014234e-01	ci left: 3.417125e-02	ci right 3.784651e-02	k: 1439	n:40000
ADAMTS3   40000 perm   11 sec   (3652 perm/sec)   p_kst 3.597500e-02   p_cons 2.432500e-01   p_joint 7.200000e-02

Joint ci ratio: 6.297458e-02	ci left: 6.965065e-02	ci right 7.419920e-02	k: 3595	n:50000
Cons ci ratio: 3.095517e-02	ci left: 2.390666e-01	ci right 2.466033e-01	k: 12141	n:50000
KS ci ratio: 9.076841e-02	ci left: 3.432542e-02	ci right 3.760874e-02	k: 1797	n:50000
ADAMTS3   50000 perm   14 sec   (3548 perm/sec)   p_kst 3.594000e-02   p_cons 2.428200e-01   p_joint 7.190000e-02

Outputting figure to mutsig2_images.part000000000003/ADAMTS3.11_3706_50000_0.03594_0.24282_0.0719.png
                gene_name: ADAMTS3
               theta_stop: 0.091 
                    nperm: 50000 
                     p_ks: 0.036 
        ci_ks_bounds_left: 0.034 
       ci_ks_bounds_right: 0.038 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.072 
     ci_joint_bounds_left: 0.070 
    ci_joint_bounds_right: 0.074 

Current progress: 12 percent done.
ACSM2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.874991e-02	ci left: 4.958504e-01	ci right 5.155463e-01	k: 5057	n:10000
KS ci ratio: 2.153911e-02	ci left: 7.597007e-01	ci right 7.763429e-01	k: 7681	n:10000
ACSM2A   10000 perm   2 sec   (5206 perm/sec)   p_kst 7.681000e-01   p_cons 5.057000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000003/ACSM2A.10_1786_10000_0.7681_0.5057_1.png
                gene_name: ACSM2A
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 14 percent done.
ADAMTS19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.253329e-01	ci left: 8.348941e-02	ci right 9.475129e-02	k: 890	n:10000
Cons ci ratio: 7.082374e-02	ci left: 2.261254e-01	ci right 2.428295e-01	k: 2344	n:10000
KS ci ratio: 1.540616e-01	ci left: 5.609849e-02	ci right 6.555935e-02	k: 607	n:10000
ADAMTS19   10000 perm   2 sec   (4141 perm/sec)   p_kst 6.070000e-02   p_cons 2.344000e-01   p_joint 8.900000e-02

Joint ci ratio: 9.129435e-02	ci left: 8.053403e-02	ci right 8.828730e-02	k: 1687	n:20000
Cons ci ratio: 5.028353e-02	ci left: 2.271553e-01	ci right 2.389224e-01	k: 4660	n:20000
KS ci ratio: 1.084192e-01	ci left: 5.801445e-02	ci right 6.471377e-02	k: 1226	n:20000
ADAMTS19   20000 perm   5 sec   (3857 perm/sec)   p_kst 6.130000e-02   p_cons 2.330000e-01   p_joint 8.435000e-02

Joint ci ratio: 8.420777e-02	ci left: 6.452293e-02	ci right 7.022787e-02	k: 2020	n:30000
Cons ci ratio: 4.115818e-02	ci left: 2.273653e-01	ci right 2.369533e-01	k: 6964	n:30000
KS ci ratio: 9.176870e-02	ci left: 5.469633e-02	ci right 5.998981e-02	k: 1719	n:30000
ADAMTS19   30000 perm   8 sec   (3703 perm/sec)   p_kst 5.730000e-02   p_cons 2.321333e-01   p_joint 6.733333e-02

Outputting figure to mutsig2_images.part000000000003/ADAMTS19.10_3716_30000_0.0573_0.23213_0.067333.png
                gene_name: ADAMTS19
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.057 
        ci_ks_bounds_left: 0.055 
       ci_ks_bounds_right: 0.060 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.067 
     ci_joint_bounds_left: 0.065 
    ci_joint_bounds_right: 0.070 

Current progress: 15 percent done.
ACTN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.357574e-02	ci left: 4.374215e-01	ci right 4.570092e-01	k: 4472	n:10000
KS ci ratio: 1.517575e-02	ci left: 8.629443e-01	ci right 8.762395e-01	k: 8697	n:10000
ACTN2   10000 perm   2 sec   (4477 perm/sec)   p_kst 8.697000e-01   p_cons 4.472000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000003/ACTN2.9_2769_10000_0.8697_0.4472_1.png
                gene_name: ACTN2
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 17 percent done.
ADAM29
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.086321e-02	ci left: 2.259279e-01	ci right 2.426271e-01	k: 2342	n:10000
Cons ci ratio: 1.597330e-01	ci left: 5.224686e-02	ci right 6.141345e-02	k: 567	n:10000
KS ci ratio: 1.255649e-02	ci left: 9.011385e-01	ci right 9.126232e-01	k: 9070	n:10000
ADAM29   10000 perm   2 sec   (4508 perm/sec)   p_kst 9.070000e-01   p_cons 5.670000e-02   p_joint 2.342000e-01

Joint ci ratio: 4.834478e-02	ci left: 2.413823e-01	ci right 2.533912e-01	k: 4947	n:20000
Cons ci ratio: 1.125835e-01	ci left: 5.392380e-02	ci right 6.040569e-02	k: 1142	n:20000
KS ci ratio: 8.858883e-03	ci left: 9.032473e-01	ci right 9.113339e-01	k: 18147	n:20000
ADAM29   20000 perm   5 sec   (4092 perm/sec)   p_kst 9.073500e-01   p_cons 5.710000e-02   p_joint 2.473500e-01

Joint ci ratio: 4.043651e-02	ci left: 2.336864e-01	ci right 2.433643e-01	k: 7155	n:30000
Cons ci ratio: 8.905410e-02	ci left: 5.795871e-02	ci right 6.339342e-02	k: 1819	n:30000
KS ci ratio: 7.656036e-03	ci left: 8.938435e-01	ci right 9.007460e-01	k: 26920	n:30000
ADAM29   30000 perm   8 sec   (3932 perm/sec)   p_kst 8.973333e-01   p_cons 6.063333e-02   p_joint 2.385000e-01

Outputting figure to mutsig2_images.part000000000003/ADAM29.9_2467_30000_0.89733_0.060633_0.2385.png
                gene_name: ADAM29
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.061 
      ci_cons_bounds_left: 0.058 
     ci_cons_bounds_right: 0.063 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 18 percent done.
ADAMTS7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.644232e-02	ci left: 2.495448e-01	ci right 2.667963e-01	k: 2581	n:10000
Cons ci ratio: 4.356693e-02	ci left: 4.375213e-01	ci right 4.571094e-01	k: 4473	n:10000
KS ci ratio: 9.986532e-02	ci left: 1.267935e-01	ci right 1.402208e-01	k: 1334	n:10000
ADAMTS7   10000 perm   3 sec   (3629 perm/sec)   p_kst 1.334000e-01   p_cons 4.473000e-01   p_joint 2.581000e-01

Outputting figure to mutsig2_images.part000000000003/ADAMTS7.9_5157_10000_0.1334_0.4473_0.2581.png
                gene_name: ADAMTS7
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 20 percent done.
ACSM4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.543166e-02	ci left: 5.404864e-01	ci right 5.600843e-01	k: 5503	n:10000
KS ci ratio: 5.541190e-03	ci left: 9.775957e-01	ci right 9.831195e-01	k: 9805	n:10000
ACSM4   10000 perm   2 sec   (5527 perm/sec)   p_kst 9.805000e-01   p_cons 5.503000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000003/ACSM4.8_1795_10000_0.9805_0.5503_1.png
                gene_name: ACSM4
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 22 percent done.
ACSS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.611692e-02	ci left: 5.309722e-01	ci right 5.506041e-01	k: 5408	n:10000
Cons ci ratio: 6.742779e-02	ci left: 2.440081e-01	ci right 2.611363e-01	k: 2525	n:10000
KS ci ratio: 3.788368e-02	ci left: 5.071521e-01	ci right 5.268380e-01	k: 5170	n:10000
ACSS3   10000 perm   2 sec   (5108 perm/sec)   p_kst 5.170000e-01   p_cons 2.525000e-01   p_joint 5.408000e-01

Outputting figure to mutsig2_images.part000000000003/ACSS3.7_2125_10000_0.517_0.2525_0.5408.png
                gene_name: ACSS3
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 23 percent done.
ADAM20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.566662e-02	ci left: 3.221743e-01	ci right 3.407240e-01	k: 3314	n:10000
Cons ci ratio: 5.107490e-02	ci left: 3.611229e-01	ci right 3.801525e-01	k: 3706	n:10000
KS ci ratio: 6.102425e-02	ci left: 2.831000e-01	ci right 3.010213e-01	k: 2920	n:10000
ADAM20   10000 perm   2 sec   (5598 perm/sec)   p_kst 2.920000e-01   p_cons 3.706000e-01   p_joint 3.314000e-01

Outputting figure to mutsig2_images.part000000000003/ADAM20.7_2335_10000_0.292_0.3706_0.3314.png
                gene_name: ADAM20
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 25 percent done.
ADAM22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.641595e-02	ci left: 3.163183e-01	ci right 3.347835e-01	k: 3255	n:10000
Cons ci ratio: 4.721013e-02	ci left: 3.983455e-01	ci right 4.177081e-01	k: 4080	n:10000
KS ci ratio: 8.717051e-02	ci left: 1.608181e-01	ci right 1.755758e-01	k: 1681	n:10000
ADAM22   10000 perm   2 sec   (4793 perm/sec)   p_kst 1.681000e-01   p_cons 4.080000e-01   p_joint 3.255000e-01

Outputting figure to mutsig2_images.part000000000003/ADAM22.7_2940_10000_0.1681_0.408_0.3255.png
                gene_name: ADAM22
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 26 percent done.
ACSM5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.558764e-02	ci left: 4.152841e-01	ci right 4.347596e-01	k: 4250	n:10000
Cons ci ratio: 3.217011e-02	ci left: 5.878110e-01	ci right 6.071321e-01	k: 5975	n:10000
KS ci ratio: 7.632823e-02	ci left: 2.006723e-01	ci right 2.166978e-01	k: 2086	n:10000
ACSM5   10000 perm   2 sec   (5344 perm/sec)   p_kst 2.086000e-01   p_cons 5.975000e-01   p_joint 4.250000e-01

Outputting figure to mutsig2_images.part000000000003/ACSM5.6_1792_10000_0.2086_0.5975_0.425.png
                gene_name: ACSM5
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.43 

Current progress: 28 percent done.
ACTC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.084306e-02	ci left: 7.713448e-01	ci right 7.876920e-01	k: 7796	n:10000
KS ci ratio: 1.332298e-02	ci left: 8.903638e-01	ci right 9.024042e-01	k: 8965	n:10000
ACTC1   10000 perm   2 sec   (5701 perm/sec)   p_kst 8.965000e-01   p_cons 7.796000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000003/ACTC1.6_1158_10000_0.8965_0.7796_1.png
                gene_name: ACTC1
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 29 percent done.
ACTG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.651925e-02	ci left: 6.768003e-01	ci right 6.950913e-01	k: 6860	n:10000
Cons ci ratio: 6.074508e-02	ci left: 2.849825e-01	ci right 3.029377e-01	k: 2939	n:10000
KS ci ratio: 3.315575e-02	ci left: 5.731628e-01	ci right 5.925889e-01	k: 5829	n:10000
ACTG2   10000 perm   2 sec   (5531 perm/sec)   p_kst 5.829000e-01   p_cons 2.939000e-01   p_joint 6.860000e-01

Outputting figure to mutsig2_images.part000000000003/ACTG2.6_1163_10000_0.5829_0.2939_0.686.png
                gene_name: ACTG2
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 31 percent done.
ADAM21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.310919e-01	ci left: 6.437624e-03	ci right 1.005764e-02	k: 81	n:10000
Cons ci ratio: 3.402247e-01	ci left: 1.087258e-02	ci right 1.541759e-02	k: 130	n:10000
KS ci ratio: 3.389164e-01	ci left: 1.096414e-02	ci right 1.552595e-02	k: 131	n:10000
ADAM21   10000 perm   2 sec   (5060 perm/sec)   p_kst 1.310000e-02   p_cons 1.300000e-02   p_joint 8.100000e-03

Joint ci ratio: 3.481110e-01	ci left: 5.205045e-03	ci right 7.442133e-03	k: 125	n:20000
Cons ci ratio: 2.364985e-01	ci left: 1.194666e-02	ci right 1.519704e-02	k: 270	n:20000
KS ci ratio: 2.494107e-01	ci left: 1.067791e-02	ci right 1.376634e-02	k: 243	n:20000
ADAM21   20000 perm   4 sec   (4531 perm/sec)   p_kst 1.215000e-02   p_cons 1.350000e-02   p_joint 6.250000e-03

Joint ci ratio: 3.281742e-01	ci left: 3.957669e-03	ci right 5.540593e-03	k: 141	n:30000
Cons ci ratio: 1.908535e-01	ci left: 1.254223e-02	ci right 1.521980e-02	k: 415	n:30000
KS ci ratio: 2.120119e-01	ci left: 1.007160e-02	ci right 1.249111e-02	k: 337	n:30000
ADAM21   30000 perm   7 sec   (4392 perm/sec)   p_kst 1.123333e-02   p_cons 1.383333e-02   p_joint 4.700000e-03

Joint ci ratio: 3.249437e-01	ci left: 3.036855e-03	ci right 4.236984e-03	k: 144	n:40000
Cons ci ratio: 1.634516e-01	ci left: 1.301542e-02	ci right 1.535588e-02	k: 566	n:40000
KS ci ratio: 1.864896e-01	ci left: 9.905587e-03	ci right 1.196634e-02	k: 436	n:40000
ADAM21   40000 perm   9 sec   (4282 perm/sec)   p_kst 1.090000e-02   p_cons 1.415000e-02   p_joint 3.600000e-03

Joint ci ratio: 3.284884e-01	ci left: 2.374263e-03	ci right 3.324917e-03	k: 141	n:50000
Cons ci ratio: 1.472265e-01	ci left: 1.294991e-02	ci right 1.502708e-02	k: 698	n:50000
KS ci ratio: 1.673057e-01	ci left: 9.950851e-03	ci right 1.178660e-02	k: 542	n:50000
ADAM21   50000 perm   12 sec   (4196 perm/sec)   p_kst 1.084000e-02   p_cons 1.396000e-02   p_joint 2.820000e-03

Joint ci ratio: 1.968356e-01	ci left: 5.920171e-03	ci right 7.228244e-03	k: 393	n:60000
Cons ci ratio: 1.345455e-01	ci left: 1.301067e-02	ci right 1.490344e-02	k: 836	n:60000
KS ci ratio: 1.507074e-01	ci left: 1.030915e-02	ci right 1.200530e-02	k: 668	n:60000
ADAM21   60000 perm   15 sec   (4108 perm/sec)   p_kst 1.113333e-02   p_cons 1.393333e-02   p_joint 6.550000e-03

Joint ci ratio: 1.900188e-01	ci left: 5.468535e-03	ci right 6.630127e-03	k: 422	n:70000
Cons ci ratio: 1.236375e-01	ci left: 1.328117e-02	ci right 1.504516e-02	k: 990	n:70000
KS ci ratio: 1.405792e-01	ci left: 1.021293e-02	ci right 1.177086e-02	k: 768	n:70000
ADAM21   70000 perm   17 sec   (4010 perm/sec)   p_kst 1.097143e-02   p_cons 1.414286e-02   p_joint 6.028571e-03

Joint ci ratio: 1.928608e-01	ci left: 4.641961e-03	ci right 5.644442e-03	k: 410	n:80000
Cons ci ratio: 1.162037e-01	ci left: 1.320940e-02	ci right 1.485112e-02	k: 1121	n:80000
KS ci ratio: 1.297103e-01	ci left: 1.055487e-02	ci right 1.203089e-02	k: 902	n:80000
ADAM21   80000 perm   20 sec   (3912 perm/sec)   p_kst 1.127500e-02   p_cons 1.401250e-02   p_joint 5.125000e-03

Joint ci ratio: 1.446953e-01	ci left: 7.503315e-03	ci right 8.684276e-03	k: 727	n:90000
Cons ci ratio: 1.092184e-01	ci left: 1.333985e-02	ci right 1.489170e-02	k: 1269	n:90000
KS ci ratio: 1.220418e-01	ci left: 1.064123e-02	ci right 1.203498e-02	k: 1019	n:90000
ADAM21   90000 perm   23 sec   (3852 perm/sec)   p_kst 1.132222e-02   p_cons 1.410000e-02   p_joint 8.077778e-03

Joint ci ratio: 1.504823e-01	ci left: 6.232604e-03	ci right 7.256321e-03	k: 673	n:100000
Cons ci ratio: 1.040300e-01	ci left: 1.327118e-02	ci right 1.473721e-02	k: 1399	n:100000
KS ci ratio: 1.159517e-01	ci left: 1.064437e-02	ci right 1.196420e-02	k: 1129	n:100000
ADAM21   100000 perm   26 sec   (3796 perm/sec)   p_kst 1.129000e-02   p_cons 1.399000e-02   p_joint 6.730000e-03

Joint ci ratio: 1.506413e-01	ci left: 5.657127e-03	ci right 6.587383e-03	k: 672	n:110000
Cons ci ratio: 9.876677e-02	ci left: 1.342041e-02	ci right 1.482357e-02	k: 1552	n:110000
KS ci ratio: 1.106908e-01	ci left: 1.064837e-02	ci right 1.190487e-02	k: 1239	n:110000
ADAM21   110000 perm   30 sec   (3728 perm/sec)   p_kst 1.126364e-02   p_cons 1.410909e-02   p_joint 6.109091e-03

Joint ci ratio: 1.470959e-01	ci left: 5.450413e-03	ci right 6.323726e-03	k: 705	n:120000
Cons ci ratio: 9.459549e-02	ci left: 1.344051e-02	ci right 1.478313e-02	k: 1692	n:120000
KS ci ratio: 1.051454e-01	ci left: 1.084760e-02	ci right 1.205952e-02	k: 1373	n:120000
ADAM21   120000 perm   33 sec   (3666 perm/sec)   p_kst 1.144167e-02   p_cons 1.410000e-02   p_joint 5.875000e-03

Joint ci ratio: 2.040539e-01	ci left: 2.541952e-03	ci right 3.126729e-03	k: 367	n:130000
Cons ci ratio: 9.995597e-02	ci left: 1.110752e-02	ci right 1.228364e-02	k: 1519	n:130000
KS ci ratio: 1.013135e-01	ci left: 1.080749e-02	ci right 1.196831e-02	k: 1479	n:130000
ADAM21   130000 perm   36 sec   (3611 perm/sec)   p_kst 1.137692e-02   p_cons 1.168462e-02   p_joint 2.823077e-03

Joint ci ratio: 2.010834e-01	ci left: 2.434956e-03	ci right 2.985962e-03	k: 378	n:140000
Cons ci ratio: 9.661675e-02	ci left: 1.105961e-02	ci right 1.218932e-02	k: 1626	n:140000
KS ci ratio: 9.784092e-02	ci left: 1.078077e-02	ci right 1.189675e-02	k: 1586	n:140000
ADAM21   140000 perm   40 sec   (3544 perm/sec)   p_kst 1.132857e-02   p_cons 1.161429e-02   p_joint 2.700000e-03

Joint ci ratio: 1.457383e-01	ci left: 4.450076e-03	ci right 5.155942e-03	k: 719	n:150000
Cons ci ratio: 9.337358e-02	ci left: 1.107076e-02	ci right 1.216157e-02	k: 1741	n:150000
KS ci ratio: 9.473084e-02	ci left: 1.075170e-02	ci right 1.182732e-02	k: 1692	n:150000
ADAM21   150000 perm   43 sec   (3487 perm/sec)   p_kst 1.128000e-02   p_cons 1.160667e-02   p_joint 4.793333e-03

Joint ci ratio: 1.566188e-01	ci left: 3.594486e-03	ci right 4.211205e-03	k: 623	n:160000
Cons ci ratio: 9.019113e-02	ci left: 1.114218e-02	ci right 1.220063e-02	k: 1866	n:160000
KS ci ratio: 9.133646e-02	ci left: 1.086113e-02	ci right 1.190669e-02	k: 1820	n:160000
ADAM21   160000 perm   47 sec   (3439 perm/sec)   p_kst 1.137500e-02   p_cons 1.166250e-02   p_joint 3.893750e-03

Joint ci ratio: 1.540563e-01	ci left: 3.501760e-03	ci right 4.091831e-03	k: 644	n:170000
Cons ci ratio: 8.773772e-02	ci left: 1.109640e-02	ci right 1.212036e-02	k: 1972	n:170000
KS ci ratio: 8.883755e-02	ci left: 1.082021e-02	ci right 1.183185e-02	k: 1924	n:170000
ADAM21   170000 perm   50 sec   (3379 perm/sec)   p_kst 1.131765e-02   p_cons 1.160000e-02   p_joint 3.788235e-03

Joint ci ratio: 1.547969e-01	ci left: 3.275143e-03	ci right 3.829925e-03	k: 638	n:180000
Cons ci ratio: 8.530829e-02	ci left: 1.109956e-02	ci right 1.209404e-02	k: 2086	n:180000
KS ci ratio: 8.672784e-02	ci left: 1.073526e-02	ci right 1.171391e-02	k: 2019	n:180000
ADAM21   180000 perm   54 sec   (3325 perm/sec)   p_kst 1.121667e-02   p_cons 1.158889e-02   p_joint 3.544444e-03

Joint ci ratio: 1.511752e-01	ci left: 3.259677e-03	ci right 3.797751e-03	k: 669	n:190000
Cons ci ratio: 8.286087e-02	ci left: 1.115945e-02	ci right 1.212922e-02	k: 2211	n:190000
KS ci ratio: 8.435914e-02	ci left: 1.076257e-02	ci right 1.171559e-02	k: 2134	n:190000
ADAM21   190000 perm   58 sec   (3273 perm/sec)   p_kst 1.123158e-02   p_cons 1.163684e-02   p_joint 3.521053e-03

Joint ci ratio: 1.468533e-01	ci left: 3.289241e-03	ci right 3.815310e-03	k: 709	n:200000
Cons ci ratio: 8.077019e-02	ci left: 1.116961e-02	ci right 1.211462e-02	k: 2327	n:200000
KS ci ratio: 8.219296e-02	ci left: 1.078257e-02	ci right 1.171167e-02	k: 2248	n:200000
ADAM21   200000 perm   62 sec   (3231 perm/sec)   p_kst 1.124000e-02   p_cons 1.163500e-02   p_joint 3.545000e-03

Joint ci ratio: 1.461446e-01	ci left: 3.164707e-03	ci right 3.668202e-03	k: 716	n:210000
Cons ci ratio: 7.884649e-02	ci left: 1.117442e-02	ci right 1.209628e-02	k: 2442	n:210000
KS ci ratio: 7.998037e-02	ci left: 1.085697e-02	ci right 1.176612e-02	k: 2374	n:210000
ADAM21   210000 perm   66 sec   (3191 perm/sec)   p_kst 1.130476e-02   p_cons 1.162857e-02   p_joint 3.409524e-03

Joint ci ratio: 1.450440e-01	ci left: 3.069024e-03	ci right 3.553300e-03	k: 727	n:220000
Cons ci ratio: 7.734515e-02	ci left: 1.109431e-02	ci right 1.199135e-02	k: 2538	n:220000
KS ci ratio: 7.843048e-02	ci left: 1.078672e-02	ci right 1.167168e-02	k: 2469	n:220000
ADAM21   220000 perm   70 sec   (3151 perm/sec)   p_kst 1.122273e-02   p_cons 1.153636e-02   p_joint 3.304545e-03

Joint ci ratio: 1.417709e-01	ci left: 3.078111e-03	ci right 3.551934e-03	k: 761	n:230000
Cons ci ratio: 7.582457e-02	ci left: 1.105119e-02	ci right 1.192640e-02	k: 2641	n:230000
KS ci ratio: 7.683109e-02	ci left: 1.076112e-02	ci right 1.162518e-02	k: 2573	n:230000
ADAM21   230000 perm   74 sec   (3112 perm/sec)   p_kst 1.118696e-02   p_cons 1.148261e-02   p_joint 3.308696e-03

Joint ci ratio: 1.390608e-01	ci left: 3.070464e-03	ci right 3.533326e-03	k: 791	n:240000
Cons ci ratio: 7.407696e-02	ci left: 1.110590e-02	ci right 1.196429e-02	k: 2767	n:240000
KS ci ratio: 7.529729e-02	ci left: 1.074600e-02	ci right 1.159087e-02	k: 2679	n:240000
ADAM21   240000 perm   78 sec   (3073 perm/sec)   p_kst 1.116250e-02   p_cons 1.152917e-02   p_joint 3.295833e-03

Joint ci ratio: 1.419768e-01	ci left: 2.824120e-03	ci right 3.259528e-03	k: 759	n:250000
Cons ci ratio: 7.233116e-02	ci left: 1.119179e-02	ci right 1.203559e-02	k: 2902	n:250000
KS ci ratio: 7.367818e-02	ci left: 1.078330e-02	ci right 1.161209e-02	k: 2798	n:250000
ADAM21   250000 perm   82 sec   (3031 perm/sec)   p_kst 1.119200e-02   p_cons 1.160800e-02   p_joint 3.036000e-03

Joint ci ratio: 1.187578e-01	ci left: 3.925173e-03	ci right 4.424440e-03	k: 1084	n:260000
Cons ci ratio: 7.093986e-02	ci left: 1.119572e-02	ci right 1.202291e-02	k: 3017	n:260000
KS ci ratio: 7.232232e-02	ci left: 1.076881e-02	ci right 1.158061e-02	k: 2904	n:260000
ADAM21   260000 perm   87 sec   (2990 perm/sec)   p_kst 1.116923e-02   p_cons 1.160385e-02   p_joint 4.169231e-03

Joint ci ratio: 1.178437e-01	ci left: 3.840886e-03	ci right 4.325410e-03	k: 1101	n:270000
Cons ci ratio: 6.976116e-02	ci left: 1.115583e-02	ci right 1.196582e-02	k: 3120	n:270000
KS ci ratio: 7.108642e-02	ci left: 1.074096e-02	ci right 1.153625e-02	k: 3006	n:270000
ADAM21   270000 perm   91 sec   (2955 perm/sec)   p_kst 1.113333e-02   p_cons 1.155556e-02   p_joint 4.077778e-03

Joint ci ratio: 1.166366e-01	ci left: 3.783439e-03	ci right 4.255489e-03	k: 1124	n:280000
Cons ci ratio: 6.848904e-02	ci left: 1.116804e-02	ci right 1.196354e-02	k: 3237	n:280000
KS ci ratio: 6.988905e-02	ci left: 1.072223e-02	ci right 1.150222e-02	k: 3110	n:280000
ADAM21   280000 perm   96 sec   (2918 perm/sec)   p_kst 1.110714e-02   p_cons 1.156071e-02   p_joint 4.014286e-03

Joint ci ratio: 1.182379e-01	ci left: 3.552541e-03	ci right 4.002293e-03	k: 1094	n:290000
Cons ci ratio: 6.735520e-02	ci left: 1.115580e-02	ci right 1.193676e-02	k: 3347	n:290000
KS ci ratio: 6.868543e-02	ci left: 1.072524e-02	ci right 1.149147e-02	k: 3220	n:290000
ADAM21   290000 perm   101 sec   (2884 perm/sec)   p_kst 1.110345e-02   p_cons 1.154138e-02   p_joint 3.772414e-03

Joint ci ratio: 1.176004e-01	ci left: 3.472935e-03	ci right 3.910072e-03	k: 1106	n:300000
Cons ci ratio: 6.625647e-02	ci left: 1.115104e-02	ci right 1.191844e-02	k: 3459	n:300000
KS ci ratio: 6.749073e-02	ci left: 1.074454e-02	ci right 1.149828e-02	k: 3335	n:300000
ADAM21   300000 perm   105 sec   (2849 perm/sec)   p_kst 1.111667e-02   p_cons 1.153000e-02   p_joint 3.686667e-03

Joint ci ratio: 1.170779e-01	ci left: 3.392208e-03	ci right 3.817155e-03	k: 1116	n:310000
Cons ci ratio: 6.521906e-02	ci left: 1.114351e-02	ci right 1.189793e-02	k: 3570	n:310000
KS ci ratio: 6.654176e-02	ci left: 1.070242e-02	ci right 1.144224e-02	k: 3431	n:310000
ADAM21   310000 perm   110 sec   (2811 perm/sec)   p_kst 1.106774e-02   p_cons 1.151613e-02   p_joint 3.600000e-03

Joint ci ratio: 1.153361e-01	ci left: 3.389362e-03	ci right 3.807207e-03	k: 1150	n:320000
Cons ci ratio: 6.424655e-02	ci left: 1.113038e-02	ci right 1.187226e-02	k: 3679	n:320000
KS ci ratio: 6.541645e-02	ci left: 1.073372e-02	ci right 1.146268e-02	k: 3550	n:320000
ADAM21   320000 perm   115 sec   (2777 perm/sec)   p_kst 1.109375e-02   p_cons 1.149688e-02   p_joint 3.593750e-03

Joint ci ratio: 1.146448e-01	ci left: 3.327852e-03	ci right 3.735488e-03	k: 1164	n:330000
Cons ci ratio: 6.334166e-02	ci left: 1.110918e-02	ci right 1.183883e-02	k: 3785	n:330000
KS ci ratio: 6.440850e-02	ci left: 1.074234e-02	ci right 1.146022e-02	k: 3662	n:330000
ADAM21   330000 perm   120 sec   (2743 perm/sec)   p_kst 1.109697e-02   p_cons 1.146970e-02   p_joint 3.527273e-03

Joint ci ratio: 1.178398e-01	ci left: 3.052897e-03	ci right 3.437999e-03	k: 1102	n:340000
Cons ci ratio: 6.231220e-02	ci left: 1.114721e-02	ci right 1.186703e-02	k: 3911	n:340000
KS ci ratio: 6.320912e-02	ci left: 1.083160e-02	ci right 1.154148e-02	k: 3802	n:340000
ADAM21   340000 perm   125 sec   (2712 perm/sec)   p_kst 1.118235e-02   p_cons 1.150294e-02   p_joint 3.241176e-03

Joint ci ratio: 1.196544e-01	ci left: 2.874170e-03	ci right 3.242705e-03	k: 1069	n:350000
Cons ci ratio: 6.153207e-02	ci left: 1.111000e-02	ci right 1.181812e-02	k: 4011	n:350000
KS ci ratio: 6.218606e-02	ci left: 1.087649e-02	ci right 1.157735e-02	k: 3928	n:350000
ADAM21   350000 perm   131 sec   (2677 perm/sec)   p_kst 1.122286e-02   p_cons 1.146000e-02   p_joint 3.054286e-03

Joint ci ratio: 1.184444e-01	ci left: 2.853622e-03	ci right 3.215562e-03	k: 1091	n:360000
Cons ci ratio: 6.051312e-02	ci left: 1.117342e-02	ci right 1.187337e-02	k: 4147	n:360000
KS ci ratio: 6.133361e-02	ci left: 1.087520e-02	ci right 1.156603e-02	k: 4038	n:360000
ADAM21   360000 perm   136 sec   (2647 perm/sec)   p_kst 1.121667e-02   p_cons 1.151944e-02   p_joint 3.030556e-03

Joint ci ratio: 1.039363e-01	ci left: 3.630619e-03	ci right 4.031267e-03	k: 1416	n:370000
Cons ci ratio: 5.971261e-02	ci left: 1.116958e-02	ci right 1.185972e-02	k: 4259	n:370000
KS ci ratio: 6.054480e-02	ci left: 1.086339e-02	ci right 1.154429e-02	k: 4144	n:370000
ADAM21   370000 perm   141 sec   (2618 perm/sec)   p_kst 1.120000e-02   p_cons 1.151081e-02   p_joint 3.827027e-03

Joint ci ratio: 8.874844e-02	ci left: 4.881131e-03	ci right 5.336992e-03	k: 1940	n:380000
Cons ci ratio: 5.334609e-02	ci left: 1.363663e-02	ci right 1.438660e-02	k: 5323	n:380000
KS ci ratio: 5.976434e-02	ci left: 1.086004e-02	ci right 1.153165e-02	k: 4253	n:380000
ADAM21   380000 perm   147 sec   (2589 perm/sec)   p_kst 1.119211e-02   p_cons 1.400789e-02   p_joint 5.105263e-03

Outputting figure to mutsig2_images.part000000000003/ADAM21.6_2173_380000_0.011192_0.014008_0.0051053.png
                gene_name: ADAM21
               theta_stop: 0.089 
                    nperm: 380000 
                     p_ks: 0.011 
        ci_ks_bounds_left: 0.011 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.014 
      ci_cons_bounds_left: 0.014 
     ci_cons_bounds_right: 0.014 
                  p_joint: 0.0051 
     ci_joint_bounds_left: 0.0049 
    ci_joint_bounds_right: 0.0053 

Current progress: 32 percent done.
ADAM23
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.367975e-02	ci left: 2.659681e-01	ci right 2.835633e-01	k: 2747	n:10000
Cons ci ratio: 1.021741e-01	ci left: 1.217066e-01	ci right 1.349108e-01	k: 1282	n:10000
KS ci ratio: 4.891266e-02	ci left: 3.814188e-01	ci right 4.006447e-01	k: 3910	n:10000
ADAM23   10000 perm   2 sec   (4840 perm/sec)   p_kst 3.910000e-01   p_cons 1.282000e-01   p_joint 2.747000e-01

Joint ci ratio: 5.130325e-02	ci left: 2.201197e-01	ci right 2.317601e-01	k: 4518	n:20000
Cons ci ratio: 7.355390e-02	ci left: 1.197574e-01	ci right 1.289521e-01	k: 2486	n:20000
KS ci ratio: 3.571231e-02	ci left: 3.691808e-01	ci right 3.826553e-01	k: 7518	n:20000
ADAM23   20000 perm   5 sec   (4384 perm/sec)   p_kst 3.759000e-01   p_cons 1.243000e-01   p_joint 2.259000e-01

Outputting figure to mutsig2_images.part000000000003/ADAM23.6_2603_20000_0.3759_0.1243_0.2259.png
                gene_name: ADAM23
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 34 percent done.
ADAM7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.078422e-01	ci left: 1.103719e-01	ci right 1.230523e-01	k: 1166	n:10000
Cons ci ratio: 3.824171e-02	ci left: 5.024508e-01	ci right 5.221421e-01	k: 5123	n:10000
KS ci ratio: 1.893355e-01	ci left: 3.719780e-02	ci right 4.507236e-02	k: 410	n:10000
ADAM7   10000 perm   2 sec   (4875 perm/sec)   p_kst 4.100000e-02   p_cons 5.123000e-01   p_joint 1.166000e-01

Joint ci ratio: 6.519175e-02	ci left: 1.480859e-01	ci right 1.581151e-01	k: 3061	n:20000
Cons ci ratio: 2.617150e-02	ci left: 5.217031e-01	ci right 5.355885e-01	k: 10573	n:20000
KS ci ratio: 1.309216e-01	ci left: 4.008492e-02	ci right 4.574894e-02	k: 857	n:20000
ADAM7   20000 perm   5 sec   (4391 perm/sec)   p_kst 4.285000e-02   p_cons 5.286500e-01   p_joint 1.530500e-01

Joint ci ratio: 6.994750e-02	ci left: 9.144222e-02	ci right 9.810317e-02	k: 2842	n:30000
Cons ci ratio: 2.166929e-02	ci left: 5.160289e-01	ci right 5.273669e-01	k: 15651	n:30000
KS ci ratio: 1.062099e-01	ci left: 4.112198e-02	ci right 4.576696e-02	k: 1302	n:30000
ADAM7   30000 perm   7 sec   (4165 perm/sec)   p_kst 4.340000e-02   p_cons 5.217000e-01   p_joint 9.473333e-02

Joint ci ratio: 5.443882e-02	ci left: 1.116174e-01	ci right 1.178886e-01	k: 4589	n:40000
Cons ci ratio: 1.883040e-02	ci left: 5.150902e-01	ci right 5.249069e-01	k: 20800	n:40000
KS ci ratio: 9.210094e-02	ci left: 4.132614e-02	ci right 4.534049e-02	k: 1732	n:40000
ADAM7   40000 perm   10 sec   (4089 perm/sec)   p_kst 4.330000e-02   p_cons 5.200000e-01   p_joint 1.147250e-01

Outputting figure to mutsig2_images.part000000000003/ADAM7.6_2353_40000_0.0433_0.52_0.11472.png
                gene_name: ADAM7
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.043 
        ci_ks_bounds_left: 0.041 
       ci_ks_bounds_right: 0.045 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 35 percent done.
ADAMTS17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.852468e-02	ci left: 3.852013e-01	ci right 4.044600e-01	k: 3948	n:10000
Cons ci ratio: 1.146988e-02	ci left: 9.157457e-01	ci right 9.264074e-01	k: 9212	n:10000
KS ci ratio: 8.098835e-02	ci left: 1.820569e-01	ci right 1.975242e-01	k: 1897	n:10000
ADAMTS17   10000 perm   2 sec   (4604 perm/sec)   p_kst 1.897000e-01   p_cons 9.212000e-01   p_joint 3.948000e-01

Outputting figure to mutsig2_images.part000000000003/ADAMTS17.6_3376_10000_0.1897_0.9212_0.3948.png
                gene_name: ADAMTS17
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.40 

Current progress: 37 percent done.
ADAMTS4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.353212e-02	ci left: 5.676469e-01	ci right 5.871080e-01	k: 5774	n:10000
Cons ci ratio: 6.424362e-02	ci left: 2.625040e-01	ci right 2.800294e-01	k: 2712	n:10000
KS ci ratio: 2.437784e-02	ci left: 7.121969e-01	ci right 7.298742e-01	k: 7211	n:10000
ADAMTS4   10000 perm   2 sec   (5104 perm/sec)   p_kst 7.211000e-01   p_cons 2.712000e-01   p_joint 5.774000e-01

Outputting figure to mutsig2_images.part000000000003/ADAMTS4.6_2550_10000_0.7211_0.2712_0.5774.png
                gene_name: ADAMTS4
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 38 percent done.
ACSM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.713003e-02	ci left: 3.108607e-01	ci right 3.292442e-01	k: 3200	n:10000
Cons ci ratio: 5.012518e-02	ci left: 3.698758e-01	ci right 3.889945e-01	k: 3794	n:10000
KS ci ratio: 6.503267e-02	ci left: 2.577545e-01	ci right 2.751817e-01	k: 2664	n:10000
ACSM1   10000 perm   2 sec   (5402 perm/sec)   p_kst 2.664000e-01   p_cons 3.794000e-01   p_joint 3.200000e-01

Outputting figure to mutsig2_images.part000000000003/ACSM1.5_1786_10000_0.2664_0.3794_0.32.png
                gene_name: ACSM1
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 40 percent done.
ACSM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.025385e-02	ci left: 7.811735e-01	ci right 7.972577e-01	k: 7893	n:10000
Cons ci ratio: 2.048496e-02	ci left: 7.773223e-01	ci right 7.935111e-01	k: 7855	n:10000
KS ci ratio: 2.543521e-02	ci left: 6.946419e-01	ci right 7.126393e-01	k: 7037	n:10000
ACSM3   10000 perm   2 sec   (5309 perm/sec)   p_kst 7.037000e-01   p_cons 7.855000e-01   p_joint 7.893000e-01

Outputting figure to mutsig2_images.part000000000003/ACSM3.5_1906_10000_0.7037_0.7855_0.7893.png
                gene_name: ACSM3
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 42 percent done.
ACTN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.960880e-02	ci left: 2.928118e-01	ci right 3.109038e-01	k: 3018	n:10000
Cons ci ratio: 1.666254e-02	ci left: 8.397935e-01	ci right 8.540038e-01	k: 8470	n:10000
KS ci ratio: 7.463647e-02	ci left: 2.080667e-01	ci right 2.242990e-01	k: 2161	n:10000
ACTN4   10000 perm   2 sec   (4890 perm/sec)   p_kst 2.161000e-01   p_cons 8.470000e-01   p_joint 3.018000e-01

Outputting figure to mutsig2_images.part000000000003/ACTN4.5_2820_10000_0.2161_0.847_0.3018.png
                gene_name: ACTN4
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 43 percent done.
ADAD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.507969e-02	ci left: 2.060944e-01	ci right 2.222724e-01	k: 2141	n:10000
Cons ci ratio: 1.161806e-01	ci left: 9.623212e-02	ci right 1.082007e-01	k: 1021	n:10000
KS ci ratio: 3.104511e-02	ci left: 6.048784e-01	ci right 6.240549e-01	k: 6145	n:10000
ADAD1   10000 perm   2 sec   (5145 perm/sec)   p_kst 6.145000e-01   p_cons 1.021000e-01   p_joint 2.141000e-01

Joint ci ratio: 3.545871e-02	ci left: 3.725185e-01	ci right 3.860166e-01	k: 7585	n:20000
Cons ci ratio: 8.079552e-02	ci left: 1.010296e-01	ci right 1.095855e-01	k: 2105	n:20000
KS ci ratio: 2.252263e-02	ci left: 5.954776e-01	ci right 6.090926e-01	k: 12046	n:20000
ADAD1   20000 perm   4 sec   (4698 perm/sec)   p_kst 6.023000e-01   p_cons 1.052500e-01   p_joint 3.792500e-01

Outputting figure to mutsig2_images.part000000000003/ADAD1.5_1775_20000_0.6023_0.10525_0.37925.png
                gene_name: ADAD1
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 45 percent done.
ADAM12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.104303e-02	ci left: 7.680025e-01	ci right 7.844363e-01	k: 7763	n:10000
KS ci ratio: 1.097315e-02	ci left: 9.221388e-01	ci right 9.324107e-01	k: 9274	n:10000
ADAM12   10000 perm   2 sec   (4860 perm/sec)   p_kst 9.274000e-01   p_cons 7.763000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000003/ADAM12.5_2930_10000_0.9274_0.7763_1.png
                gene_name: ADAM12
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 46 percent done.
ADAM33
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.340906e-02	ci left: 3.406464e-01	ci right 3.594411e-01	k: 3500	n:10000
Cons ci ratio: 6.059909e-02	ci left: 2.859734e-01	ci right 3.039462e-01	k: 2949	n:10000
KS ci ratio: 7.045098e-02	ci left: 2.280016e-01	ci right 2.447522e-01	k: 2363	n:10000
ADAM33   10000 perm   2 sec   (4975 perm/sec)   p_kst 2.363000e-01   p_cons 2.949000e-01   p_joint 3.500000e-01

Outputting figure to mutsig2_images.part000000000003/ADAM33.5_2530_10000_0.2363_0.2949_0.35.png
                gene_name: ADAM33
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 48 percent done.
ADAM9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.212491e-02	ci left: 7.498858e-01	ci right 7.667635e-01	k: 7584	n:10000
Cons ci ratio: 5.525475e-02	ci left: 3.254505e-01	ci right 3.440459e-01	k: 3347	n:10000
KS ci ratio: 2.365790e-02	ci left: 7.242122e-01	ci right 7.416519e-01	k: 7330	n:10000
ADAM9   10000 perm   2 sec   (5580 perm/sec)   p_kst 7.330000e-01   p_cons 3.347000e-01   p_joint 7.584000e-01

Outputting figure to mutsig2_images.part000000000003/ADAM9.5_2548_10000_0.733_0.3347_0.7584.png
                gene_name: ADAM9
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 49 percent done.
ADAMTS5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.179401e-02	ci left: 3.546598e-01	ci right 3.736194e-01	k: 3641	n:10000
Cons ci ratio: 4.279128e-02	ci left: 4.464018e-01	ci right 4.660237e-01	k: 4562	n:10000
KS ci ratio: 7.056825e-02	ci left: 2.274091e-01	ci right 2.441451e-01	k: 2357	n:10000
ADAMTS5   10000 perm   2 sec   (4999 perm/sec)   p_kst 2.357000e-01   p_cons 4.562000e-01   p_joint 3.641000e-01

Outputting figure to mutsig2_images.part000000000003/ADAMTS5.5_2825_10000_0.2357_0.4562_0.3641.png
                gene_name: ADAMTS5
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 51 percent done.
ADAMTS6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.528286e-02	ci left: 6.971632e-01	ci right 7.151166e-01	k: 7062	n:10000
KS ci ratio: 1.732587e-02	ci left: 8.292056e-01	ci right 8.437978e-01	k: 8366	n:10000
ADAMTS6   10000 perm   2 sec   (4632 perm/sec)   p_kst 8.366000e-01   p_cons 7.062000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000003/ADAMTS6.5_3450_10000_0.8366_0.7062_1.png
                gene_name: ADAMTS6
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 52 percent done.
ACTL8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.340238e-01	ci left: 7.349567e-02	ci right 8.415122e-02	k: 787	n:10000
Cons ci ratio: 2.626109e-02	ci left: 6.810325e-01	ci right 6.992566e-01	k: 6902	n:10000
KS ci ratio: 2.418322e-01	ci left: 2.249916e-02	ci right 2.878131e-02	k: 255	n:10000
ACTL8   10000 perm   2 sec   (6131 perm/sec)   p_kst 2.550000e-02   p_cons 6.902000e-01   p_joint 7.870000e-02

Joint ci ratio: 6.889918e-02	ci left: 1.344796e-01	ci right 1.441255e-01	k: 2785	n:20000
Cons ci ratio: 2.022295e-02	ci left: 6.459543e-01	ci right 6.592013e-01	k: 13052	n:20000
KS ci ratio: 1.758224e-01	ci left: 2.211467e-02	ci right 2.642516e-02	k: 484	n:20000
ACTL8   20000 perm   4 sec   (5155 perm/sec)   p_kst 2.420000e-02   p_cons 6.526000e-01   p_joint 1.392500e-01

Joint ci ratio: 7.831975e-02	ci left: 7.404042e-02	ci right 8.010845e-02	k: 2311	n:30000
Cons ci ratio: 1.638252e-02	ci left: 6.507602e-01	ci right 6.615429e-01	k: 19685	n:30000
KS ci ratio: 1.420166e-01	ci left: 2.300533e-02	ci right 2.655419e-02	k: 742	n:30000
ACTL8   30000 perm   6 sec   (4936 perm/sec)   p_kst 2.473333e-02   p_cons 6.561667e-01   p_joint 7.703333e-02

Joint ci ratio: 7.845125e-02	ci left: 5.644057e-02	ci right 6.107375e-02	k: 2349	n:40000
Cons ci ratio: 1.412390e-02	ci left: 6.535280e-01	ci right 6.628491e-01	k: 26328	n:40000
KS ci ratio: 1.230329e-01	ci left: 2.322530e-02	ci right 2.629422e-02	k: 989	n:40000
ACTL8   40000 perm   8 sec   (4796 perm/sec)   p_kst 2.472500e-02   p_cons 6.582000e-01   p_joint 5.872500e-02

Joint ci ratio: 6.899756e-02	ci left: 5.854389e-02	ci right 6.274730e-02	k: 3031	n:50000
Cons ci ratio: 1.226472e-02	ci left: 6.672430e-01	ci right 6.754971e-01	k: 33569	n:50000
KS ci ratio: 1.109905e-01	ci left: 2.298747e-02	ci right 2.570814e-02	k: 1216	n:50000
ACTL8   50000 perm   11 sec   (4685 perm/sec)   p_kst 2.432000e-02   p_cons 6.713800e-01   p_joint 6.062000e-02

Joint ci ratio: 6.559146e-02	ci left: 5.433754e-02	ci right 5.803887e-02	k: 3370	n:60000
Cons ci ratio: 1.115252e-02	ci left: 6.693300e-01	ci right 6.768532e-01	k: 40386	n:60000
KS ci ratio: 1.008400e-01	ci left: 2.332648e-02	ci right 2.581980e-02	k: 1473	n:60000
ACTL8   60000 perm   13 sec   (4578 perm/sec)   p_kst 2.455000e-02   p_cons 6.731000e-01   p_joint 5.616667e-02

Joint ci ratio: 6.240668e-02	ci left: 5.168956e-02	ci right 5.503330e-02	k: 3734	n:70000
Cons ci ratio: 1.032156e-02	ci left: 6.697684e-01	ci right 6.767315e-01	k: 47128	n:70000
KS ci ratio: 9.318401e-02	ci left: 2.350696e-02	ci right 2.581838e-02	k: 1725	n:70000
ACTL8   70000 perm   16 sec   (4482 perm/sec)   p_kst 2.464286e-02   p_cons 6.732571e-01   p_joint 5.334286e-02

Outputting figure to mutsig2_images.part000000000003/ACTL8.4_1109_70000_0.024643_0.67326_0.053343.png
                gene_name: ACTL8
               theta_stop: 0.093 
                    nperm: 70000 
                     p_ks: 0.025 
        ci_ks_bounds_left: 0.024 
       ci_ks_bounds_right: 0.026 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.053 
     ci_joint_bounds_left: 0.052 
    ci_joint_bounds_right: 0.055 

Current progress: 54 percent done.
ACTL9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.257287e-02	ci left: 5.817902e-01	ci right 6.011565e-01	k: 5915	n:10000
Cons ci ratio: 4.537380e-02	ci left: 4.175767e-01	ci right 4.370657e-01	k: 4273	n:10000
KS ci ratio: 3.888187e-02	ci left: 4.941505e-01	ci right 5.138471e-01	k: 5040	n:10000
ACTL9   10000 perm   2 sec   (6270 perm/sec)   p_kst 5.040000e-01   p_cons 4.273000e-01   p_joint 5.915000e-01

Outputting figure to mutsig2_images.part000000000003/ACTL9.4_1255_10000_0.504_0.4273_0.5915.png
                gene_name: ACTL9
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 55 percent done.
ACTRT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.661776e-02	ci left: 6.751883e-01	ci right 6.935042e-01	k: 6844	n:10000
KS ci ratio: 5.320867e-03	ci left: 9.791993e-01	ci right 9.845147e-01	k: 9820	n:10000
ACTRT2   10000 perm   2 sec   (6030 perm/sec)   p_kst 9.820000e-01   p_cons 6.844000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000003/ACTRT2.4_1138_10000_0.982_0.6844_1.png
                gene_name: ACTRT2
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 57 percent done.
ACVR1C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.358022e-02	ci left: 1.727107e-01	ci right 1.878760e-01	k: 1802	n:10000
Cons ci ratio: 1.745679e-01	ci left: 4.379660e-02	ci right 5.226918e-02	k: 479	n:10000
KS ci ratio: 9.222915e-02	ci left: 1.458981e-01	ci right 1.601047e-01	k: 1529	n:10000
ACVR1C   10000 perm   2 sec   (6113 perm/sec)   p_kst 1.529000e-01   p_cons 4.790000e-02   p_joint 1.802000e-01

Joint ci ratio: 6.911550e-02	ci left: 1.337406e-01	ci right 1.433648e-01	k: 2770	n:20000
Cons ci ratio: 1.229040e-01	ci left: 4.541801e-02	ci right 5.141416e-02	k: 967	n:20000
KS ci ratio: 6.517918e-02	ci left: 1.481353e-01	ci right 1.581658e-01	k: 3062	n:20000
ACVR1C   20000 perm   4 sec   (5253 perm/sec)   p_kst 1.531000e-01   p_cons 4.835000e-02   p_joint 1.385000e-01

Joint ci ratio: 6.272150e-02	ci left: 1.115751e-01	ci right 1.188329e-01	k: 3455	n:30000
Cons ci ratio: 1.014952e-01	ci left: 4.495767e-02	ci right 4.979714e-02	k: 1420	n:30000
KS ci ratio: 5.285595e-02	ci left: 1.508227e-01	ci right 1.590442e-01	k: 4647	n:30000
ACVR1C   30000 perm   6 sec   (5002 perm/sec)   p_kst 1.549000e-01   p_cons 4.733333e-02   p_joint 1.151667e-01

Joint ci ratio: 4.552866e-02	ci left: 1.527786e-01	ci right 1.599214e-01	k: 6253	n:40000
Cons ci ratio: 8.779239e-02	ci left: 4.538698e-02	ci right 4.957903e-02	k: 1898	n:40000
KS ci ratio: 4.585501e-02	ci left: 1.509212e-01	ci right 1.580290e-01	k: 6178	n:40000
ACVR1C   40000 perm   8 sec   (4795 perm/sec)   p_kst 1.544500e-01   p_cons 4.745000e-02   p_joint 1.563250e-01

Outputting figure to mutsig2_images.part000000000003/ACVR1C.4_1518_40000_0.15445_0.04745_0.15632.png
                gene_name: ACVR1C
               theta_stop: 0.088 
                    nperm: 40000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.047 
      ci_cons_bounds_left: 0.045 
     ci_cons_bounds_right: 0.050 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 58 percent done.
ACVR2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.909943e-03	ci left: 9.351657e-01	ci right 9.445760e-01	k: 9400	n:10000
Cons ci ratio: 1.824276e-02	ci left: 8.143595e-01	ci right 8.294525e-01	k: 8220	n:10000
KS ci ratio: 1.812426e-02	ci left: 8.162904e-01	ci right 8.313205e-01	k: 8239	n:10000
ACVR2A   10000 perm   2 sec   (5790 perm/sec)   p_kst 8.239000e-01   p_cons 8.220000e-01   p_joint 9.400000e-01

Outputting figure to mutsig2_images.part000000000003/ACVR2A.4_1586_10000_0.8239_0.822_0.94.png
                gene_name: ACVR2A
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.94 

Current progress: 60 percent done.
ADAM10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.108332e-02	ci left: 2.827037e-01	ci right 3.006178e-01	k: 2916	n:10000
KS ci ratio: 1.506850e-02	ci left: 8.645785e-01	ci right 8.778045e-01	k: 8713	n:10000
ADAM10   10000 perm   2 sec   (5545 perm/sec)   p_kst 8.713000e-01   p_cons 2.916000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000003/ADAM10.4_2311_10000_0.8713_0.2916_1.png
                gene_name: ADAM10
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
ADAMTS14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.772759e-03	ci left: 9.676262e-01	ci right 9.742956e-01	k: 9711	n:10000
KS ci ratio: 1.558138e-02	ci left: 8.567172e-01	ci right 8.702703e-01	k: 8636	n:10000
ADAMTS14   10000 perm   2 sec   (5175 perm/sec)   p_kst 8.636000e-01   p_cons 9.711000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000003/ADAMTS14.4_3769_10000_0.8636_0.9711_1.png
                gene_name: ADAMTS14
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 63 percent done.
ADAMTS15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.237781e-02	ci left: 5.847001e-01	ci right 6.040449e-01	k: 5944	n:10000
Cons ci ratio: 5.526715e-02	ci left: 3.253512e-01	ci right 3.439452e-01	k: 3346	n:10000
KS ci ratio: 2.470529e-02	ci left: 7.067471e-01	ci right 7.245272e-01	k: 7157	n:10000
ADAMTS15   10000 perm   2 sec   (5070 perm/sec)   p_kst 7.157000e-01   p_cons 3.346000e-01   p_joint 5.944000e-01

Outputting figure to mutsig2_images.part000000000003/ADAMTS15.4_2885_10000_0.7157_0.3346_0.5944.png
                gene_name: ADAMTS15
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 65 percent done.
ADAMTS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.873320e-02	ci left: 8.063342e-01	ci right 8.216825e-01	k: 8141	n:10000
KS ci ratio: 2.373646e-02	ci left: 7.228992e-01	ci right 7.403656e-01	k: 7317	n:10000
ADAMTS2   10000 perm   2 sec   (4481 perm/sec)   p_kst 7.317000e-01   p_cons 8.141000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000003/ADAMTS2.4_3799_10000_0.7317_0.8141_1.png
                gene_name: ADAMTS2
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 66 percent done.
ACSS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.768697e-02	ci left: 5.097532e-01	ci right 5.294354e-01	k: 5196	n:10000
KS ci ratio: 1.226434e-02	ci left: 9.051459e-01	ci right 9.164135e-01	k: 9109	n:10000
ACSS1   10000 perm   2 sec   (5316 perm/sec)   p_kst 9.109000e-01   p_cons 5.196000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000003/ACSS1.3_2126_10000_0.9109_0.5196_1.png
                gene_name: ACSS1
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
ACTA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.118413e-01	ci left: 1.032490e-01	ci right 1.155795e-01	k: 1093	n:10000
Cons ci ratio: 7.947409e-03	ci left: 9.566005e-01	ci right 9.643283e-01	k: 9606	n:10000
KS ci ratio: 1.238134e-01	ci left: 8.543267e-02	ci right 9.680682e-02	k: 910	n:10000
ACTA1   10000 perm   2 sec   (6439 perm/sec)   p_kst 9.100000e-02   p_cons 9.606000e-01   p_joint 1.093000e-01

Joint ci ratio: 6.074107e-02	ci left: 1.670892e-01	ci right 1.776063e-01	k: 3446	n:20000
Cons ci ratio: 5.638873e-03	ci left: 9.575012e-01	ci right 9.629639e-01	k: 19206	n:20000
KS ci ratio: 8.838073e-02	ci left: 8.557862e-02	ci right 9.354118e-02	k: 1790	n:20000
ACTA1   20000 perm   4 sec   (5633 perm/sec)   p_kst 8.950000e-02   p_cons 9.603000e-01   p_joint 1.723000e-01

Outputting figure to mutsig2_images.part000000000003/ACTA1.3_1158_20000_0.0895_0.9603_0.1723.png
                gene_name: ACTA1
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.089 
        ci_ks_bounds_left: 0.086 
       ci_ks_bounds_right: 0.094 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 69 percent done.
ACTBL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.714316e-02	ci left: 3.107615e-01	ci right 3.291435e-01	k: 3199	n:10000
Cons ci ratio: 3.706525e-02	ci left: 5.180585e-01	ci right 5.377252e-01	k: 5279	n:10000
KS ci ratio: 7.319143e-02	ci left: 2.146757e-01	ci right 2.310860e-01	k: 2228	n:10000
ACTBL2   10000 perm   2 sec   (6021 perm/sec)   p_kst 2.228000e-01   p_cons 5.279000e-01   p_joint 3.199000e-01

Outputting figure to mutsig2_images.part000000000003/ACTBL2.3_1135_10000_0.2228_0.5279_0.3199.png
                gene_name: ACTBL2
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 71 percent done.
ACTL6A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.909237e-02	ci left: 4.914510e-01	ci right 5.111482e-01	k: 5013	n:10000
Cons ci ratio: 1.017199e-01	ci left: 1.226845e-01	ci right 1.359322e-01	k: 1292	n:10000
KS ci ratio: 3.453877e-02	ci left: 5.531109e-01	ci right 5.726525e-01	k: 5629	n:10000
ACTL6A   10000 perm   2 sec   (5915 perm/sec)   p_kst 5.629000e-01   p_cons 1.292000e-01   p_joint 5.013000e-01

Joint ci ratio: 1.569383e-02	ci left: 7.512459e-01	ci right 7.631793e-01	k: 15145	n:20000
Cons ci ratio: 7.183240e-02	ci left: 1.249251e-01	ci right 1.342829e-01	k: 2591	n:20000
KS ci ratio: 2.420154e-02	ci left: 5.604993e-01	ci right 5.742811e-01	k: 11348	n:20000
ACTL6A   20000 perm   4 sec   (5093 perm/sec)   p_kst 5.674000e-01   p_cons 1.295500e-01   p_joint 7.572500e-01

Outputting figure to mutsig2_images.part000000000003/ACTL6A.3_1346_20000_0.5674_0.12955_0.75725.png
                gene_name: ACTL6A
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.76 

Current progress: 72 percent done.
ACTR6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.008231e-01	ci left: 3.300513e-02	ci right 4.046787e-02	k: 366	n:10000
Cons ci ratio: 4.067840e-01	ci left: 7.332900e-03	ci right 1.116119e-02	k: 91	n:10000
KS ci ratio: 3.713222e-02	ci left: 5.171578e-01	ci right 5.368265e-01	k: 5270	n:10000
ACTR6   10000 perm   1 sec   (6925 perm/sec)   p_kst 5.270000e-01   p_cons 9.100000e-03   p_joint 3.660000e-02

Joint ci ratio: 7.988696e-02	ci left: 1.031412e-01	ci right 1.117733e-01	k: 2148	n:20000
Cons ci ratio: 2.941709e-01	ci left: 7.506100e-03	ci right 1.013969e-02	k: 175	n:20000
KS ci ratio: 2.601700e-02	ci left: 5.246552e-01	ci right 5.385357e-01	k: 10632	n:20000
ACTR6   20000 perm   4 sec   (5450 perm/sec)   p_kst 5.316000e-01   p_cons 8.750000e-03   p_joint 1.074000e-01

Joint ci ratio: 6.660776e-02	ci left: 1.000421e-01	ci right 1.069683e-01	k: 3104	n:30000
Cons ci ratio: 2.340103e-01	ci left: 8.182088e-03	ci right 1.038119e-02	k: 277	n:30000
KS ci ratio: 2.123048e-02	ci left: 5.262341e-01	ci right 5.375598e-01	k: 15957	n:30000
ACTR6   30000 perm   6 sec   (5073 perm/sec)   p_kst 5.319000e-01   p_cons 9.233333e-03   p_joint 1.034667e-01

Joint ci ratio: 5.629855e-02	ci left: 1.050484e-01	ci right 1.111586e-01	k: 4323	n:40000
Cons ci ratio: 1.998665e-01	ci left: 8.572620e-03	ci right 1.049959e-02	k: 380	n:40000
KS ci ratio: 1.834025e-02	ci left: 5.282461e-01	ci right 5.380491e-01	k: 21326	n:40000
ACTR6   40000 perm   8 sec   (4909 perm/sec)   p_kst 5.331500e-01   p_cons 9.500000e-03   p_joint 1.080750e-01

Joint ci ratio: 5.028207e-02	ci left: 1.056483e-01	ci right 1.111173e-01	k: 5418	n:50000
Cons ci ratio: 1.753149e-01	ci left: 9.031614e-03	ci right 1.078599e-02	k: 494	n:50000
KS ci ratio: 1.643216e-02	ci left: 5.279148e-01	ci right 5.366815e-01	k: 26615	n:50000
ACTR6   50000 perm   11 sec   (4601 perm/sec)   p_kst 5.323000e-01   p_cons 9.880000e-03   p_joint 1.083600e-01

Joint ci ratio: 4.579375e-02	ci left: 1.063355e-01	ci right 1.113357e-01	k: 6529	n:60000
Cons ci ratio: 1.605871e-01	ci left: 9.043231e-03	ci right 1.063805e-02	k: 589	n:60000
KS ci ratio: 1.500553e-02	ci left: 5.281310e-01	ci right 5.361325e-01	k: 31928	n:60000
ACTR6   60000 perm   13 sec   (4496 perm/sec)   p_kst 5.321333e-01   p_cons 9.816667e-03   p_joint 1.088167e-01

Joint ci ratio: 3.770012e-02	ci left: 1.312578e-01	ci right 1.363155e-01	k: 9364	n:70000
Cons ci ratio: 1.479530e-01	ci left: 9.193563e-03	ci right 1.067606e-02	k: 694	n:70000
KS ci ratio: 1.383412e-02	ci left: 5.305248e-01	ci right 5.379295e-01	k: 37396	n:70000
ACTR6   70000 perm   16 sec   (4477 perm/sec)   p_kst 5.342286e-01   p_cons 9.914286e-03   p_joint 1.337714e-01

Joint ci ratio: 3.524787e-02	ci left: 1.315348e-01	ci right 1.362667e-01	k: 10711	n:80000
Cons ci ratio: 1.376369e-01	ci left: 9.346232e-03	ci right 1.073964e-02	k: 802	n:80000
KS ci ratio: 1.294238e-02	ci left: 5.306984e-01	ci right 5.376241e-01	k: 42733	n:80000
ACTR6   80000 perm   18 sec   (4437 perm/sec)   p_kst 5.341625e-01   p_cons 1.002500e-02   p_joint 1.338875e-01

Joint ci ratio: 3.370012e-02	ci left: 1.284821e-01	ci right 1.328972e-01	k: 11761	n:90000
Cons ci ratio: 1.292157e-01	ci left: 9.467771e-03	ci right 1.078631e-02	k: 910	n:90000
KS ci ratio: 1.220375e-02	ci left: 5.308344e-01	ci right 5.373634e-01	k: 48069	n:90000
ACTR6   90000 perm   21 sec   (4386 perm/sec)   p_kst 5.341000e-01   p_cons 1.011111e-02   p_joint 1.306778e-01

Joint ci ratio: 3.530877e-02	ci left: 1.077892e-01	ci right 1.116734e-01	k: 10972	n:100000
Cons ci ratio: 1.232771e-01	ci left: 9.392556e-03	ci right 1.063611e-02	k: 1000	n:100000
KS ci ratio: 1.155798e-02	ci left: 5.318426e-01	ci right 5.380353e-01	k: 53494	n:100000
ACTR6   100000 perm   24 sec   (4220 perm/sec)   p_kst 5.349400e-01   p_cons 1.000000e-02   p_joint 1.097200e-01

Joint ci ratio: 3.053031e-02	ci left: 1.283430e-01	ci right 1.323311e-01	k: 14336	n:110000
Cons ci ratio: 1.171165e-01	ci left: 9.491025e-03	ci right 1.068047e-02	k: 1108	n:110000
KS ci ratio: 1.101899e-02	ci left: 5.320380e-01	ci right 5.379420e-01	k: 58849	n:110000
ACTR6   110000 perm   27 sec   (4150 perm/sec)   p_kst 5.349909e-01   p_cons 1.007273e-02   p_joint 1.303273e-01

Joint ci ratio: 2.924492e-02	ci left: 1.283173e-01	ci right 1.321339e-01	k: 15626	n:120000
Cons ci ratio: 1.118422e-01	ci left: 9.566267e-03	ci right 1.070759e-02	k: 1215	n:120000
KS ci ratio: 1.056243e-02	ci left: 5.315728e-01	ci right 5.372256e-01	k: 64128	n:120000
ACTR6   120000 perm   30 sec   (4042 perm/sec)   p_kst 5.344000e-01   p_cons 1.012500e-02   p_joint 1.302167e-01

Joint ci ratio: 2.946001e-02	ci left: 1.181006e-01	ci right 1.216395e-01	k: 15582	n:130000
Cons ci ratio: 1.080919e-01	ci left: 9.473720e-03	ci right 1.056369e-02	k: 1301	n:130000
KS ci ratio: 1.015858e-02	ci left: 5.311683e-01	ci right 5.365994e-01	k: 69405	n:130000
ACTR6   130000 perm   33 sec   (3951 perm/sec)   p_kst 5.338846e-01   p_cons 1.000769e-02   p_joint 1.198615e-01

Joint ci ratio: 2.839674e-02	ci left: 1.181033e-01	ci right 1.215124e-01	k: 16772	n:140000
Cons ci ratio: 1.039413e-01	ci left: 9.534110e-03	ci right 1.058633e-02	k: 1407	n:140000
KS ci ratio: 9.788613e-03	ci left: 5.312898e-01	ci right 5.365231e-01	k: 74747	n:140000
ACTR6   140000 perm   36 sec   (3883 perm/sec)   p_kst 5.339071e-01   p_cons 1.005000e-02   p_joint 1.198000e-01

Joint ci ratio: 3.092617e-02	ci left: 9.524854e-02	ci right 9.824707e-02	k: 14511	n:150000
Cons ci ratio: 1.005709e-01	ci left: 9.522133e-03	ci right 1.053694e-02	k: 1503	n:150000
KS ci ratio: 9.451142e-03	ci left: 5.316716e-01	ci right 5.367270e-01	k: 80130	n:150000
ACTR6   150000 perm   39 sec   (3835 perm/sec)   p_kst 5.342000e-01   p_cons 1.002000e-02   p_joint 9.674000e-02

Joint ci ratio: 2.993928e-02	ci left: 9.532432e-02	ci right 9.822781e-02	k: 15483	n:160000
Cons ci ratio: 9.769366e-02	ci left: 9.475543e-03	ci right 1.045484e-02	k: 1593	n:160000
KS ci ratio: 9.146094e-03	ci left: 5.320209e-01	ci right 5.369154e-01	k: 85515	n:160000
ACTR6   160000 perm   42 sec   (3772 perm/sec)   p_kst 5.344688e-01   p_cons 9.956250e-03   p_joint 9.676875e-02

Outputting figure to mutsig2_images.part000000000003/ACTR6.3_1235_160000_0.53447_0.0099562_0.096769.png
                gene_name: ACTR6
               theta_stop: 0.098 
                    nperm: 160000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.0100 
      ci_cons_bounds_left: 0.0095 
     ci_cons_bounds_right: 0.010 
                  p_joint: 0.097 
     ci_joint_bounds_left: 0.095 
    ci_joint_bounds_right: 0.098 

Current progress: 74 percent done.
ACTRT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.309509e-01	ci left: 2.476030e-02	ci right 3.131851e-02	k: 279	n:10000
Cons ci ratio: 7.969522e-02	ci left: 1.869789e-01	ci right 2.025993e-01	k: 1947	n:10000
KS ci ratio: 2.998689e-01	ci left: 1.427992e-02	ci right 1.940710e-02	k: 167	n:10000
ACTRT1   10000 perm   2 sec   (5525 perm/sec)   p_kst 1.670000e-02   p_cons 1.947000e-01   p_joint 2.790000e-02

Joint ci ratio: 1.659200e-01	ci left: 2.489359e-02	ci right 2.944527e-02	k: 542	n:20000
Cons ci ratio: 5.715669e-02	ci left: 1.849296e-01	ci right 1.958606e-01	k: 3807	n:20000
KS ci ratio: 2.098322e-01	ci left: 1.534872e-02	ci right 1.899360e-02	k: 342	n:20000
ACTRT1   20000 perm   4 sec   (4994 perm/sec)   p_kst 1.710000e-02   p_cons 1.903500e-01   p_joint 2.710000e-02

Joint ci ratio: 1.351760e-01	ci left: 2.542076e-02	ci right 2.913821e-02	k: 817	n:30000
Cons ci ratio: 4.674934e-02	ci left: 1.854091e-01	ci right 1.943177e-01	k: 5695	n:30000
KS ci ratio: 1.740149e-01	ci left: 1.518449e-02	ci right 1.811019e-02	k: 498	n:30000
ACTRT1   30000 perm   6 sec   (4997 perm/sec)   p_kst 1.660000e-02   p_cons 1.898333e-01   p_joint 2.723333e-02

Joint ci ratio: 1.618662e-01	ci left: 1.327937e-02	ci right 1.564189e-02	k: 577	n:40000
Cons ci ratio: 4.064704e-02	ci left: 1.848014e-01	ci right 1.924938e-01	k: 7545	n:40000
KS ci ratio: 1.514366e-01	ci left: 1.522618e-02	ci right 1.774472e-02	k: 658	n:40000
ACTRT1   40000 perm   8 sec   (4953 perm/sec)   p_kst 1.645000e-02   p_cons 1.886250e-01   p_joint 1.442500e-02

Joint ci ratio: 1.187177e-01	ci left: 2.007172e-02	ci right 2.262427e-02	k: 1066	n:50000
Cons ci ratio: 3.556897e-02	ci left: 1.919521e-01	ci right 1.989233e-01	k: 9771	n:50000
KS ci ratio: 1.297044e-01	ci left: 1.677525e-02	ci right 1.912119e-02	k: 896	n:50000
ACTRT1   50000 perm   10 sec   (4788 perm/sec)   p_kst 1.792000e-02   p_cons 1.954200e-01   p_joint 2.132000e-02

Joint ci ratio: 9.655981e-02	ci left: 2.544099e-02	ci right 2.803840e-02	k: 1603	n:60000
Cons ci ratio: 3.235575e-02	ci left: 1.933601e-01	ci right 1.997359e-01	k: 11792	n:60000
KS ci ratio: 1.185382e-01	ci left: 1.683795e-02	ci right 1.897571e-02	k: 1073	n:60000
ACTRT1   60000 perm   13 sec   (4640 perm/sec)   p_kst 1.788333e-02   p_cons 1.965333e-01   p_joint 2.671667e-02

Joint ci ratio: 7.534555e-02	ci left: 3.582412e-02	ci right 3.864297e-02	k: 2605	n:70000
Cons ci ratio: 2.994953e-02	ci left: 1.936613e-01	ci right 1.995638e-01	k: 13762	n:70000
KS ci ratio: 1.094786e-01	ci left: 1.700017e-02	ci right 1.898293e-02	k: 1258	n:70000
ACTRT1   70000 perm   15 sec   (4530 perm/sec)   p_kst 1.797143e-02   p_cons 1.966000e-01   p_joint 3.721429e-02

Joint ci ratio: 8.165685e-02	ci left: 2.685546e-02	ci right 2.915394e-02	k: 2239	n:80000
Cons ci ratio: 2.801206e-02	ci left: 1.938881e-01	ci right 1.994089e-01	k: 15731	n:80000
KS ci ratio: 1.024753e-01	ci left: 1.704123e-02	ci right 1.889396e-02	k: 1436	n:80000
ACTRT1   80000 perm   18 sec   (4433 perm/sec)   p_kst 1.795000e-02   p_cons 1.966375e-01   p_joint 2.798750e-02

Joint ci ratio: 6.966027e-02	ci left: 3.280363e-02	ci right 3.518209e-02	k: 3058	n:90000
Cons ci ratio: 2.633643e-02	ci left: 1.949254e-01	ci right 2.001386e-01	k: 17777	n:90000
KS ci ratio: 9.618016e-02	ci left: 1.724989e-02	ci right 1.900359e-02	k: 1630	n:90000
ACTRT1   90000 perm   21 sec   (4301 perm/sec)   p_kst 1.811111e-02   p_cons 1.975222e-01   p_joint 3.397778e-02

Outputting figure to mutsig2_images.part000000000003/ACTRT1.3_1135_90000_0.018111_0.19752_0.033978.png
                gene_name: ACTRT1
               theta_stop: 0.096 
                    nperm: 90000 
                     p_ks: 0.018 
        ci_ks_bounds_left: 0.017 
       ci_ks_bounds_right: 0.019 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.034 
     ci_joint_bounds_left: 0.033 
    ci_joint_bounds_right: 0.035 

Current progress: 75 percent done.
ACVR1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.163709e-01	ci left: 9.593994e-02	ci right 1.078931e-01	k: 1018	n:10000
Cons ci ratio: 6.842438e-02	ci left: 2.385720e-01	ci right 2.555756e-01	k: 2470	n:10000
KS ci ratio: 1.247955e-01	ci left: 8.416945e-02	ci right 9.547082e-02	k: 897	n:10000
ACVR1B   10000 perm   2 sec   (4494 perm/sec)   p_kst 8.970000e-02   p_cons 2.470000e-01   p_joint 1.018000e-01

Joint ci ratio: 9.506608e-02	ci left: 7.461336e-02	ci right 8.210977e-02	k: 1566	n:20000
Cons ci ratio: 4.824761e-02	ci left: 2.421261e-01	ci right 2.541472e-01	k: 4962	n:20000
KS ci ratio: 8.868017e-02	ci left: 8.503968e-02	ci right 9.298028e-02	k: 1779	n:20000
ACVR1B   20000 perm   5 sec   (4360 perm/sec)   p_kst 8.895000e-02   p_cons 2.481000e-01   p_joint 7.830000e-02

Outputting figure to mutsig2_images.part000000000003/ACVR1B.3_1681_20000_0.08895_0.2481_0.0783.png
                gene_name: ACVR1B
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.089 
        ci_ks_bounds_left: 0.085 
       ci_ks_bounds_right: 0.093 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.078 
     ci_joint_bounds_left: 0.075 
    ci_joint_bounds_right: 0.082 

Current progress: 77 percent done.
ACVRL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.470260e-02	ci left: 2.077708e-01	ci right 2.239950e-01	k: 2158	n:10000
Cons ci ratio: 6.927536e-03	ci left: 9.662559e-01	ci right 9.730668e-01	k: 9698	n:10000
KS ci ratio: 1.133002e-01	ci left: 1.008116e-01	ci right 1.130184e-01	k: 1068	n:10000
ACVRL1   10000 perm   2 sec   (5835 perm/sec)   p_kst 1.068000e-01   p_cons 9.698000e-01   p_joint 2.158000e-01

Joint ci ratio: 4.323447e-02	ci left: 2.849590e-01	ci right 2.976017e-01	k: 5825	n:20000
Cons ci ratio: 4.961308e-03	ci left: 9.665038e-01	ci right 9.713586e-01	k: 19380	n:20000
KS ci ratio: 7.974153e-02	ci left: 1.034850e-01	ci right 1.121294e-01	k: 2155	n:20000
ACVRL1   20000 perm   4 sec   (5101 perm/sec)   p_kst 1.077500e-01   p_cons 9.690000e-01   p_joint 2.912500e-01

Outputting figure to mutsig2_images.part000000000003/ACVRL1.3_1548_20000_0.10775_0.969_0.29125.png
                gene_name: ACVRL1
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 78 percent done.
ADAM11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.722590e-03	ci left: 9.485639e-01	ci right 9.569698e-01	k: 9529	n:10000
Cons ci ratio: 5.616004e-02	ci left: 3.183032e-01	ci right 3.367974e-01	k: 3275	n:10000
KS ci ratio: 3.814999e-02	ci left: 5.036510e-01	ci right 5.233411e-01	k: 5135	n:10000
ADAM11   10000 perm   2 sec   (5397 perm/sec)   p_kst 5.135000e-01   p_cons 3.275000e-01   p_joint 9.529000e-01

Outputting figure to mutsig2_images.part000000000003/ADAM11.3_2418_10000_0.5135_0.3275_0.9529.png
                gene_name: ADAM11
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 80 percent done.
ADAM19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.655002e-02	ci left: 6.762965e-01	ci right 6.945953e-01	k: 6855	n:10000
Cons ci ratio: 4.703470e-02	ci left: 4.001384e-01	ci right 4.195142e-01	k: 4098	n:10000
KS ci ratio: 1.357978e-02	ci left: 8.866742e-01	ci right 8.988959e-01	k: 8929	n:10000
ADAM19   10000 perm   2 sec   (5440 perm/sec)   p_kst 8.929000e-01   p_cons 4.098000e-01   p_joint 6.855000e-01

Outputting figure to mutsig2_images.part000000000003/ADAM19.3_2849_10000_0.8929_0.4098_0.6855.png
                gene_name: ADAM19
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.69 

Current progress: 82 percent done.
ADAM30
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.600744e-02	ci left: 3.194942e-01	ci right 3.380056e-01	k: 3287	n:10000
Cons ci ratio: 1.432059e-02	ci left: 8.758224e-01	ci right 8.885540e-01	k: 8823	n:10000
KS ci ratio: 8.968229e-02	ci left: 1.531589e-01	ci right 1.676395e-01	k: 1603	n:10000
ADAM30   10000 perm   2 sec   (5431 perm/sec)   p_kst 1.603000e-01   p_cons 8.823000e-01   p_joint 3.287000e-01

Outputting figure to mutsig2_images.part000000000003/ADAM30.3_2377_10000_0.1603_0.8823_0.3287.png
                gene_name: ADAM30
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 83 percent done.
ADAMDEC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.952468e-02	ci left: 4.859529e-01	ci right 5.056495e-01	k: 4958	n:10000
Cons ci ratio: 4.782131e-02	ci left: 3.921708e-01	ci right 4.114864e-01	k: 4018	n:10000
KS ci ratio: 4.169550e-02	ci left: 4.592791e-01	ci right 4.789389e-01	k: 4691	n:10000
ADAMDEC1   10000 perm   2 sec   (5908 perm/sec)   p_kst 4.691000e-01   p_cons 4.018000e-01   p_joint 4.958000e-01

Outputting figure to mutsig2_images.part000000000003/ADAMDEC1.3_1469_10000_0.4691_0.4018_0.4958.png
                gene_name: ADAMDEC1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 85 percent done.
ADAMTS13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.909288e-02	ci left: 2.350148e-01	ci right 2.519349e-01	k: 2434	n:10000
Cons ci ratio: 3.018021e-02	ci left: 6.182396e-01	ci right 6.372859e-01	k: 6278	n:10000
KS ci ratio: 1.057501e-01	ci left: 1.143760e-01	ci right 1.272458e-01	k: 1207	n:10000
ADAMTS13   10000 perm   2 sec   (4478 perm/sec)   p_kst 1.207000e-01   p_cons 6.278000e-01   p_joint 2.434000e-01

Joint ci ratio: 5.305057e-02	ci left: 2.087290e-01	ci right 2.201541e-01	k: 4288	n:20000
Cons ci ratio: 2.209023e-02	ci left: 6.047543e-01	ci right 6.183132e-01	k: 12231	n:20000
KS ci ratio: 7.448022e-02	ci left: 1.171008e-01	ci right 1.262095e-01	k: 2432	n:20000
ADAMTS13   20000 perm   5 sec   (4115 perm/sec)   p_kst 1.216000e-01   p_cons 6.115500e-01   p_joint 2.144000e-01

Outputting figure to mutsig2_images.part000000000003/ADAMTS13.3_4400_20000_0.1216_0.61155_0.2144.png
                gene_name: ADAMTS13
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 86 percent done.
ACTG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.921421e-02	ci left: 7.984155e-01	ci right 8.140057e-01	k: 8063	n:10000
Cons ci ratio: 3.258635e-02	ci left: 5.815895e-01	ci right 6.009573e-01	k: 5913	n:10000
KS ci ratio: 3.275514e-02	ci left: 5.790813e-01	ci right 5.984670e-01	k: 5888	n:10000
ACTG1   10000 perm   1 sec   (6977 perm/sec)   p_kst 5.888000e-01   p_cons 5.913000e-01   p_joint 8.063000e-01

Outputting figure to mutsig2_images.part000000000003/ACTG1.2_1148_10000_0.5888_0.5913_0.8063.png
                gene_name: ACTG1
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 88 percent done.
ACTL7A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.064035e-02	ci left: 6.111060e-01	ci right 6.302237e-01	k: 6207	n:10000
Cons ci ratio: 4.344381e-02	ci left: 4.389180e-01	ci right 4.585119e-01	k: 4487	n:10000
KS ci ratio: 5.138278e-02	ci left: 3.583386e-01	ci right 3.773385e-01	k: 3678	n:10000
ACTL7A   10000 perm   2 sec   (6534 perm/sec)   p_kst 3.678000e-01   p_cons 4.487000e-01   p_joint 6.207000e-01

Outputting figure to mutsig2_images.part000000000003/ACTL7A.2_1312_10000_0.3678_0.4487_0.6207.png
                gene_name: ACTL7A
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 89 percent done.
ACTN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.562761e-02	ci left: 8.560029e-01	ci right 8.695850e-01	k: 8629	n:10000
Cons ci ratio: 2.551451e-02	ci left: 6.933310e-01	ci right 7.113510e-01	k: 7024	n:10000
KS ci ratio: 2.322914e-02	ci left: 7.313849e-01	ci right 7.486751e-01	k: 7401	n:10000
ACTN1   10000 perm   2 sec   (5608 perm/sec)   p_kst 7.401000e-01   p_cons 7.024000e-01   p_joint 8.629000e-01

Outputting figure to mutsig2_images.part000000000003/ACTN1.2_2833_10000_0.7401_0.7024_0.8629.png
                gene_name: ACTN1
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 91 percent done.
ACTN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.275626e-02	ci left: 8.983659e-01	ci right 9.099975e-01	k: 9043	n:10000
KS ci ratio: 3.935905e-02	ci left: 4.880521e-01	ci right 5.077491e-01	k: 4979	n:10000
ACTN3   10000 perm   2 sec   (5553 perm/sec)   p_kst 4.979000e-01   p_cons 9.043000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000003/ACTN3.2_2790_10000_0.4979_0.9043_1.png
                gene_name: ACTN3
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
ACTR10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.803364e-03	ci left: 9.827447e-01	ci right 9.875666e-01	k: 9853	n:10000
Cons ci ratio: 5.241476e-02	ci left: 3.491925e-01	ci right 3.680899e-01	k: 3586	n:10000
KS ci ratio: 2.631022e-02	ci left: 6.802263e-01	ci right 6.984633e-01	k: 6894	n:10000
ACTR10   10000 perm   1 sec   (6865 perm/sec)   p_kst 6.894000e-01   p_cons 3.586000e-01   p_joint 9.853000e-01

Outputting figure to mutsig2_images.part000000000003/ACTR10.2_1306_10000_0.6894_0.3586_0.9853.png
                gene_name: ACTR10
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 94 percent done.
ACTR8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.634954e-03	ci left: 9.495015e-01	ci right 9.578316e-01	k: 9538	n:10000
Cons ci ratio: 2.073996e-02	ci left: 7.730669e-01	ci right 7.893690e-01	k: 7813	n:10000
KS ci ratio: 2.881942e-02	ci left: 6.396537e-01	ci right 6.584594e-01	k: 6491	n:10000
ACTR8   10000 perm   2 sec   (6089 perm/sec)   p_kst 6.491000e-01   p_cons 7.813000e-01   p_joint 9.538000e-01

Outputting figure to mutsig2_images.part000000000003/ACTR8.2_1927_10000_0.6491_0.7813_0.9538.png
                gene_name: ACTR8
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 95 percent done.
ACY1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.717051e-02	ci left: 1.608181e-01	ci right 1.755758e-01	k: 1681	n:10000
KS ci ratio: 2.640239e-02	ci left: 6.787147e-01	ci right 6.969757e-01	k: 6879	n:10000
ACY1   10000 perm   2 sec   (6325 perm/sec)   p_kst 6.879000e-01   p_cons 1.681000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000003/ACY1.2_1283_10000_0.6879_0.1681_1.png
                gene_name: ACY1
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
ACY3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.652095e-02	ci left: 8.420346e-01	ci right 8.561614e-01	k: 8492	n:10000
KS ci ratio: 1.676522e-02	ci left: 8.381638e-01	ci right 8.524344e-01	k: 8454	n:10000
ACY3   10000 perm   2 sec   (6256 perm/sec)   p_kst 8.454000e-01   p_cons 8.492000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000003/ACY3.2_984_10000_0.8454_0.8492_1.png
                gene_name: ACY3
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
ADAMTS10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.153199e-02	ci left: 5.974476e-01	ci right 6.166900e-01	k: 6071	n:10000
KS ci ratio: 2.780800e-02	ci left: 6.558534e-01	ci right 6.744503e-01	k: 6652	n:10000
ADAMTS10   10000 perm   2 sec   (5469 perm/sec)   p_kst 6.652000e-01   p_cons 6.071000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000003/ADAMTS10.2_3408_10000_0.6652_0.6071_1.png
                gene_name: ADAMTS10
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000003
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 3 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1646>
Subject: Job 8003794: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1646>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000004> was used as the working directory.
Started at Sun Nov 11 15:03:08 2012
Results reported at Sun Nov 11 15:16:41 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000004.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000004.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 4  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000004.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    859.95 sec.
    Max Memory :      4741 MB
    Max Swap   :      7054 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
4
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 4
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 4: processing genes 272 - 362
Calculating significance of each gene.
Using projection method.
272	ADAMTS8	7.491872e-02
273	ADAMTS9	1
274	ADAMTSL1	9.217094e-01
275	ADAMTSL2	1
276	ADAMTSL3	9.140105e-01
277	ADAMTSL4	1
278	ADAMTSL5	6.343780e-01
279	ADAP1	1
280	ADAP2	1
281	ADAR	9.850808e-01
282	ADARB1	1
283	ADARB2	4.538738e-01
284	ADAT1	2.030779e-01
285	ADAT2	4.442891e-01
286	ADAT3	1
287	ADC	7.740015e-01
288	ADCK1	1
289	ADCK2	1
290	ADCK4	7.363758e-01
291	ADCK5	1
292	ADCY1	4.992038e-02
293	ADCY10	7.336649e-01
294	ADCY2	1.010802e-02
295	ADCY3	2.669700e-01
296	ADCY4	6.095945e-01
297	ADCY5	1
298	ADCY6	9.671106e-01
299	ADCY7	1.799169e-01
300	ADCY8	9.354646e-01
301	ADCY9	9.382572e-01
302	ADCYAP1	9.367173e-02
303	ADCYAP1R1	2.196765e-02
304	ADD1	1
305	ADD2	8.434997e-01
306	ADD3	9.291856e-01
307	ADH1A	8.086152e-01
308	ADH1B	7.065931e-01
309	ADH1C	8.038983e-01
310	ADH4	1.413692e-01
311	ADH5	6.853348e-01
312	ADH6	1
313	ADH7	8.044702e-01
314	ADHFE1	4.478200e-01
315	ADI1	1
316	ADIG	1
317	ADIPOQ	1.351237e-01
318	ADIPOR1	1
319	ADIPOR2	1.697753e-01
320	ADK	1
321	ADM	1
322	ADM2	1
323	ADNP	9.302705e-01
324	ADNP2	8.295075e-01
325	ADO	6.858965e-02
326	ADORA1	1.398341e-01
327	ADORA2A	2.092305e-01
328	ADORA2B	1
329	ADORA3	9.128226e-01
330	ADPGK	1
331	ADPRH	2.916607e-02
332	ADPRHL1	1
333	ADPRHL2	1
334	ADRA1A	6.682650e-01
335	ADRA1B	2.454855e-01
336	ADRA1D	1.140931e-01
337	ADRA2A	1
338	ADRA2B	5.471261e-03
339	ADRA2C	2.332068e-01
340	ADRB1	5.316653e-01
341	ADRB2	1.274920e-01
342	ADRB3	1
343	ADRBK1	9.271945e-01
344	ADRBK2	5.912247e-01
345	ADRM1	1
346	ADSL	8.146222e-01
347	ADSS	8.456152e-01
348	ADSSL1	4.286763e-01
349	AEBP1	8.619667e-01
350	AEBP2	1.448960e-01
351	AEN	1
352	AES	2.638857e-01
353	AFAP1	8.867984e-01
354	AFAP1L1	9.933428e-02
355	AFAP1L2	7.795346e-01
356	AFF1	3.823210e-01
357	AFF2	9.074904e-01
358	AFF3	9.934823e-01
359	AFF4	3.764089e-01
360	AFG3L2	1
361	AFM	7.100875e-01
362	AFMID	4.660693e-01
Done

Running MutSig 2:
Scatter job 4: processing genes 272 - 362
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ADCY8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.207744e-01	ci left: 8.951617e-02	ci right 1.011208e-01	k: 952	n:10000
Cons ci ratio: 7.088296e-02	ci left: 2.258292e-01	ci right 2.425259e-01	k: 2341	n:10000
KS ci ratio: 1.675368e-01	ci left: 4.753733e-02	ci right 5.632602e-02	k: 518	n:10000
ADCY8   10000 perm   3 sec   (3856 perm/sec)   p_kst 5.180000e-02   p_cons 2.341000e-01   p_joint 9.520000e-02

Joint ci ratio: 1.054737e-01	ci left: 6.118290e-02	ci right 6.804434e-02	k: 1291	n:20000
Cons ci ratio: 5.310574e-02	ci left: 2.083824e-01	ci right 2.198008e-01	k: 4281	n:20000
KS ci ratio: 1.217843e-01	ci left: 4.624321e-02	ci right 5.228870e-02	k: 984	n:20000
ADCY8   20000 perm   8 sec   (2569 perm/sec)   p_kst 4.920000e-02   p_cons 2.140500e-01   p_joint 6.455000e-02

Joint ci ratio: 7.772037e-02	ci left: 7.512066e-02	ci right 8.122800e-02	k: 2344	n:30000
Cons ci ratio: 4.325800e-02	ci left: 2.102300e-01	ci right 2.195586e-01	k: 6446	n:30000
KS ci ratio: 9.709255e-02	ci left: 4.902588e-02	ci right 5.406141e-02	k: 1545	n:30000
ADCY8   30000 perm   11 sec   (2840 perm/sec)   p_kst 5.150000e-02   p_cons 2.148667e-01   p_joint 7.813333e-02

Outputting figure to mutsig2_images.part000000000004/ADCY8.18_3828_30000_0.0515_0.21487_0.078133.png
                gene_name: ADCY8
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.051 
        ci_ks_bounds_left: 0.049 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.078 
     ci_joint_bounds_left: 0.075 
    ci_joint_bounds_right: 0.081 

Current progress: 2 percent done.
ADCY2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.609381e-01	ci left: 5.147727e-02	ci right 6.058353e-02	k: 559	n:10000
Cons ci ratio: 1.747592e-01	ci left: 4.370078e-02	ci right 5.216506e-02	k: 478	n:10000
KS ci ratio: 2.016804e-01	ci left: 3.271977e-02	ci right 4.015343e-02	k: 363	n:10000
ADCY2   10000 perm   2 sec   (4401 perm/sec)   p_kst 3.630000e-02   p_cons 4.780000e-02   p_joint 5.590000e-02

Joint ci ratio: 2.123661e-01	ci left: 1.496956e-02	ci right 1.857290e-02	k: 334	n:20000
Cons ci ratio: 1.212672e-01	ci left: 4.663162e-02	ci right 5.270016e-02	k: 992	n:20000
KS ci ratio: 1.405228e-01	ci left: 3.481282e-02	ci right 4.012274e-02	k: 748	n:20000
ADCY2   20000 perm   5 sec   (4029 perm/sec)   p_kst 3.740000e-02   p_cons 4.960000e-02   p_joint 1.670000e-02

Joint ci ratio: 2.676344e-01	ci left: 6.150100e-03	ci right 8.080539e-03	k: 212	n:30000
Cons ci ratio: 9.952582e-02	ci left: 4.671454e-02	ci right 5.163990e-02	k: 1474	n:30000
KS ci ratio: 1.185439e-01	ci left: 3.307835e-02	ci right 3.727896e-02	k: 1054	n:30000
ADCY2   30000 perm   8 sec   (3876 perm/sec)   p_kst 3.513333e-02   p_cons 4.913333e-02   p_joint 7.066667e-03

Joint ci ratio: 1.527379e-01	ci left: 1.496149e-02	ci right 1.745946e-02	k: 647	n:40000
Cons ci ratio: 8.545595e-02	ci left: 4.783542e-02	ci right 5.213021e-02	k: 1998	n:40000
KS ci ratio: 1.032215e-01	ci left: 3.300092e-02	ci right 3.661702e-02	k: 1391	n:40000
ADCY2   40000 perm   11 sec   (3782 perm/sec)   p_kst 3.477500e-02   p_cons 4.995000e-02   p_joint 1.617500e-02

Joint ci ratio: 1.584020e-01	ci left: 1.114087e-02	ci right 1.307640e-02	k: 604	n:50000
Cons ci ratio: 7.644638e-02	ci left: 4.804692e-02	ci right 5.188554e-02	k: 2497	n:50000
KS ci ratio: 9.134971e-02	ci left: 3.389510e-02	ci right 3.715912e-02	k: 1775	n:50000
ADCY2   50000 perm   13 sec   (3706 perm/sec)   p_kst 3.550000e-02   p_cons 4.994000e-02   p_joint 1.208000e-02

Joint ci ratio: 1.334184e-01	ci left: 1.323629e-02	ci right 1.514446e-02	k: 850	n:60000
Cons ci ratio: 6.937988e-02	ci left: 4.876131e-02	ci right 5.228232e-02	k: 3030	n:60000
KS ci ratio: 8.343528e-02	ci left: 3.400091e-02	ci right 3.697758e-02	k: 2128	n:60000
ADCY2   60000 perm   16 sec   (3637 perm/sec)   p_kst 3.546667e-02   p_cons 5.050000e-02   p_joint 1.416667e-02

Joint ci ratio: 1.494812e-01	ci left: 9.000940e-03	ci right 1.046870e-02	k: 680	n:70000
Cons ci ratio: 6.414901e-02	ci left: 4.901597e-02	ci right 5.227855e-02	k: 3544	n:70000
KS ci ratio: 7.655906e-02	ci left: 3.471622e-02	ci right 3.749384e-02	k: 2526	n:70000
ADCY2   70000 perm   20 sec   (3577 perm/sec)   p_kst 3.608571e-02   p_cons 5.062857e-02   p_joint 9.714286e-03

Joint ci ratio: 1.359371e-01	ci left: 9.587756e-03	ci right 1.099810e-02	k: 822	n:80000
Cons ci ratio: 5.990035e-02	ci left: 4.928841e-02	ci right 5.234426e-02	k: 4064	n:80000
KS ci ratio: 7.174346e-02	ci left: 3.468285e-02	ci right 3.727594e-02	k: 2877	n:80000
ADCY2   80000 perm   23 sec   (3518 perm/sec)   p_kst 3.596250e-02   p_cons 5.080000e-02   p_joint 1.027500e-02

Joint ci ratio: 1.357662e-01	ci left: 8.554337e-03	ci right 9.810937e-03	k: 825	n:90000
Cons ci ratio: 5.731893e-02	ci left: 4.798227e-02	ci right 5.082464e-02	k: 4445	n:90000
KS ci ratio: 6.745425e-02	ci left: 3.494537e-02	ci right 3.739576e-02	k: 3254	n:90000
ADCY2   90000 perm   26 sec   (3463 perm/sec)   p_kst 3.615556e-02   p_cons 4.938889e-02   p_joint 9.166667e-03

Joint ci ratio: 9.764743e-02	ci left: 1.508497e-02	ci right 1.664329e-02	k: 1585	n:100000
Cons ci ratio: 5.449951e-02	ci left: 4.784782e-02	ci right 5.053840e-02	k: 4918	n:100000
KS ci ratio: 6.393469e-02	ci left: 3.507046e-02	ci right 3.739654e-02	k: 3622	n:100000
ADCY2   100000 perm   29 sec   (3414 perm/sec)   p_kst 3.622000e-02   p_cons 4.918000e-02   p_joint 1.585000e-02

Outputting figure to mutsig2_images.part000000000004/ADCY2.17_3376_100000_0.03622_0.04918_0.01585.png
                gene_name: ADCY2
               theta_stop: 0.098 
                    nperm: 100000 
                     p_ks: 0.036 
        ci_ks_bounds_left: 0.035 
       ci_ks_bounds_right: 0.037 
                   p_cons: 0.049 
      ci_cons_bounds_left: 0.048 
     ci_cons_bounds_right: 0.051 
                  p_joint: 0.016 
     ci_joint_bounds_left: 0.015 
    ci_joint_bounds_right: 0.017 

Current progress: 4 percent done.
ADAMTS9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.185675e-02	ci left: 5.925284e-01	ci right 6.118120e-01	k: 6022	n:10000
Cons ci ratio: 3.353899e-02	ci left: 5.675467e-01	ci right 5.870083e-01	k: 5773	n:10000
KS ci ratio: 4.459463e-02	ci left: 4.260512e-01	ci right 4.455862e-01	k: 4358	n:10000
ADAMTS9   10000 perm   2 sec   (4217 perm/sec)   p_kst 4.358000e-01   p_cons 5.773000e-01   p_joint 6.022000e-01

Outputting figure to mutsig2_images.part000000000004/ADAMTS9.10_5964_10000_0.4358_0.5773_0.6022.png
                gene_name: ADAMTS9
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 6 percent done.
ADCY1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.871987e-02	ci left: 2.369909e-01	ci right 2.539576e-01	k: 2454	n:10000
Cons ci ratio: 2.315671e-02	ci left: 7.325974e-01	ci right 7.498618e-01	k: 7413	n:10000
KS ci ratio: 1.090088e-01	ci left: 1.082244e-01	ci right 1.208011e-01	k: 1144	n:10000
ADCY1   10000 perm   2 sec   (4591 perm/sec)   p_kst 1.144000e-01   p_cons 7.413000e-01   p_joint 2.454000e-01

Joint ci ratio: 5.126661e-02	ci left: 2.203674e-01	ci right 2.320123e-01	k: 4523	n:20000
Cons ci ratio: 1.650040e-02	ci left: 7.321991e-01	ci right 7.444315e-01	k: 14767	n:20000
KS ci ratio: 7.826432e-02	ci left: 1.070713e-01	ci right 1.158420e-01	k: 2228	n:20000
ADCY1   20000 perm   5 sec   (4166 perm/sec)   p_kst 1.114000e-01   p_cons 7.383500e-01   p_joint 2.261500e-01

Outputting figure to mutsig2_images.part000000000004/ADCY1.10_3440_20000_0.1114_0.73835_0.22615.png
                gene_name: ADCY1
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 8 percent done.
ADAMTSL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.648733e-01	ci left: 4.907401e-02	ci right 5.798834e-02	k: 534	n:10000
Cons ci ratio: 1.461584e-01	ci left: 6.217631e-02	ci right 7.207768e-02	k: 670	n:10000
KS ci ratio: 1.206345e-01	ci left: 8.971071e-02	ci right 1.013261e-01	k: 954	n:10000
ADAMTSL3   10000 perm   2 sec   (4033 perm/sec)   p_kst 9.540000e-02   p_cons 6.700000e-02   p_joint 5.340000e-02

Joint ci ratio: 9.024730e-02	ci left: 8.229672e-02	ci right 9.012407e-02	k: 1723	n:20000
Cons ci ratio: 1.059567e-01	ci left: 6.064653e-02	ci right 6.748089e-02	k: 1280	n:20000
KS ci ratio: 8.520455e-02	ci left: 9.160790e-02	ci right 9.981008e-02	k: 1913	n:20000
ADAMTSL3   20000 perm   5 sec   (3714 perm/sec)   p_kst 9.565000e-02   p_cons 6.400000e-02   p_joint 8.615000e-02

Joint ci ratio: 8.165880e-02	ci left: 6.841309e-02	ci right 7.427025e-02	k: 2139	n:30000
Cons ci ratio: 8.088809e-02	ci left: 6.965589e-02	ci right 7.556053e-02	k: 2177	n:30000
KS ci ratio: 7.076153e-02	ci left: 8.950676e-02	ci right 9.610568e-02	k: 2783	n:30000
ADAMTSL3   30000 perm   8 sec   (3583 perm/sec)   p_kst 9.276667e-02   p_cons 7.256667e-02   p_joint 7.130000e-02

Outputting figure to mutsig2_images.part000000000004/ADAMTSL3.9_5192_30000_0.092767_0.072567_0.0713.png
                gene_name: ADAMTSL3
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.093 
        ci_ks_bounds_left: 0.090 
       ci_ks_bounds_right: 0.096 
                   p_cons: 0.073 
      ci_cons_bounds_left: 0.070 
     ci_cons_bounds_right: 0.076 
                  p_joint: 0.071 
     ci_joint_bounds_left: 0.068 
    ci_joint_bounds_right: 0.074 

Current progress: 10 percent done.
ADCYAP1R1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.954934e-02	ci left: 1.535515e-01	ci right 1.680467e-01	k: 1607	n:10000
Cons ci ratio: 3.089463e-02	ci left: 6.071884e-01	ci right 6.263435e-01	k: 6168	n:10000
KS ci ratio: 1.372648e-01	ci left: 7.020239e-02	ci right 8.064655e-02	k: 753	n:10000
ADCYAP1R1   10000 perm   2 sec   (5152 perm/sec)   p_kst 7.530000e-02   p_cons 6.168000e-01   p_joint 1.607000e-01

Joint ci ratio: 7.120254e-02	ci left: 1.268944e-01	ci right 1.363130e-01	k: 2631	n:20000
Cons ci ratio: 2.155449e-02	ci left: 6.163914e-01	ci right 6.298727e-01	k: 12463	n:20000
KS ci ratio: 9.713258e-02	ci left: 7.163100e-02	ci right 7.899304e-02	k: 1505	n:20000
ADCYAP1R1   20000 perm   4 sec   (4678 perm/sec)   p_kst 7.525000e-02   p_cons 6.231500e-01   p_joint 1.315500e-01

Outputting figure to mutsig2_images.part000000000004/ADCYAP1R1.9_1467_20000_0.07525_0.62315_0.13155.png
                gene_name: ADCYAP1R1
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.075 
        ci_ks_bounds_left: 0.072 
       ci_ks_bounds_right: 0.079 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 12 percent done.
AFF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.926594e-02	ci left: 1.886528e-01	ci right 2.043244e-01	k: 1964	n:10000
Cons ci ratio: 6.758888e-02	ci left: 2.431184e-01	ci right 2.602265e-01	k: 2516	n:10000
KS ci ratio: 7.747908e-02	ci left: 1.958434e-01	ci right 2.117295e-01	k: 2037	n:10000
AFF3   10000 perm   2 sec   (4396 perm/sec)   p_kst 2.037000e-01   p_cons 2.516000e-01   p_joint 1.964000e-01

Outputting figure to mutsig2_images.part000000000004/AFF3.9_3848_10000_0.2037_0.2516_0.1964.png
                gene_name: AFF3
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 14 percent done.
ADCY3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.882749e-02	ci left: 4.948504e-01	ci right 5.145468e-01	k: 5047	n:10000
Cons ci ratio: 4.569972e-02	ci left: 4.140880e-01	ci right 4.335564e-01	k: 4238	n:10000
KS ci ratio: 5.477448e-02	ci left: 3.293229e-01	ci right 3.479712e-01	k: 3386	n:10000
ADCY3   10000 perm   2 sec   (4617 perm/sec)   p_kst 3.386000e-01   p_cons 4.238000e-01   p_joint 5.047000e-01

Outputting figure to mutsig2_images.part000000000004/ADCY3.7_3519_10000_0.3386_0.4238_0.5047.png
                gene_name: ADCY3
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 16 percent done.
ADCY7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.818124e-02	ci left: 3.885863e-01	ci right 4.078731e-01	k: 3982	n:10000
Cons ci ratio: 9.124547e-02	ci left: 1.486448e-01	ci right 1.629564e-01	k: 1557	n:10000
KS ci ratio: 1.416858e-02	ci left: 8.780732e-01	ci right 8.907019e-01	k: 8845	n:10000
ADCY7   10000 perm   2 sec   (4843 perm/sec)   p_kst 8.845000e-01   p_cons 1.557000e-01   p_joint 3.982000e-01

Outputting figure to mutsig2_images.part000000000004/ADCY7.7_3343_10000_0.8845_0.1557_0.3982.png
                gene_name: ADCY7
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 18 percent done.
ADAMTSL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.837802e-02	ci left: 6.466956e-01	ci right 6.654134e-01	k: 6561	n:10000
KS ci ratio: 1.740181e-02	ci left: 8.279846e-01	ci right 8.426195e-01	k: 8354	n:10000
ADAMTSL1   10000 perm   2 sec   (4046 perm/sec)   p_kst 8.354000e-01   p_cons 6.561000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000004/ADAMTSL1.6_5409_10000_0.8354_0.6561_1.png
                gene_name: ADAMTSL1
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 20 percent done.
ADARB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.590188e-03	ci left: 9.692095e-01	ci right 9.757113e-01	k: 9726	n:10000
KS ci ratio: 1.388992e-02	ci left: 8.821675e-01	ci right 8.946052e-01	k: 8885	n:10000
ADARB2   10000 perm   2 sec   (4465 perm/sec)   p_kst 8.885000e-01   p_cons 9.726000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000004/ADARB2.6_2260_10000_0.8885_0.9726_1.png
                gene_name: ADARB2
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 22 percent done.
ADCY10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.732628e-02	ci left: 5.145559e-01	ci right 5.342298e-01	k: 5244	n:10000
Cons ci ratio: 4.438670e-02	ci left: 4.283448e-01	ci right 4.478913e-01	k: 4381	n:10000
KS ci ratio: 3.637213e-02	ci left: 5.274678e-01	ci right 5.471105e-01	k: 5373	n:10000
ADCY10   10000 perm   2 sec   (4660 perm/sec)   p_kst 5.373000e-01   p_cons 4.381000e-01   p_joint 5.244000e-01

Outputting figure to mutsig2_images.part000000000004/ADCY10.6_4961_10000_0.5373_0.4381_0.5244.png
                gene_name: ADCY10
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 24 percent done.
ADRA2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.565409e-02	ci left: 5.373814e-01	ci right 5.569911e-01	k: 5472	n:10000
Cons ci ratio: 1.208994e-02	ci left: 9.075108e-01	ci right 9.186472e-01	k: 9132	n:10000
KS ci ratio: 6.816792e-02	ci left: 2.399555e-01	ci right 2.569912e-01	k: 2484	n:10000
ADRA2B   10000 perm   2 sec   (5703 perm/sec)   p_kst 2.484000e-01   p_cons 9.132000e-01   p_joint 5.472000e-01

Outputting figure to mutsig2_images.part000000000004/ADRA2B.6_1348_10000_0.2484_0.9132_0.5472.png
                gene_name: ADRA2B
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 26 percent done.
AFAP1L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.738618e-02	ci left: 5.137554e-01	ci right 5.334308e-01	k: 5236	n:10000
Cons ci ratio: 3.958604e-03	ci left: 9.878505e-01	ci right 9.918564e-01	k: 9900	n:10000
KS ci ratio: 5.323349e-02	ci left: 3.421367e-01	ci right 3.609498e-01	k: 3515	n:10000
AFAP1L1   10000 perm   2 sec   (5407 perm/sec)   p_kst 3.515000e-01   p_cons 9.900000e-01   p_joint 5.236000e-01

Outputting figure to mutsig2_images.part000000000004/AFAP1L1.6_2383_10000_0.3515_0.99_0.5236.png
                gene_name: AFAP1L1
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 28 percent done.
AFF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.432748e-02	ci left: 8.757201e-01	ci right 8.884564e-01	k: 8822	n:10000
Cons ci ratio: 6.303106e-02	ci left: 2.700268e-01	ci right 2.877022e-01	k: 2788	n:10000
KS ci ratio: 1.294683e-02	ci left: 8.956973e-01	ci right 9.074676e-01	k: 9017	n:10000
AFF1   10000 perm   2 sec   (4636 perm/sec)   p_kst 9.017000e-01   p_cons 2.788000e-01   p_joint 8.822000e-01

Outputting figure to mutsig2_images.part000000000004/AFF1.6_3758_10000_0.9017_0.2788_0.8822.png
                gene_name: AFF1
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 30 percent done.
AFF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.369703e-01	ci left: 7.049285e-02	ci right 8.095591e-02	k: 756	n:10000
Cons ci ratio: 2.910462e-02	ci left: 6.351279e-01	ci right 6.539878e-01	k: 6446	n:10000
KS ci ratio: 2.206259e-01	ci left: 2.721699e-02	ci right 3.406005e-02	k: 305	n:10000
AFF2   10000 perm   2 sec   (4978 perm/sec)   p_kst 3.050000e-02   p_cons 6.446000e-01   p_joint 7.560000e-02

Joint ci ratio: 7.644287e-02	ci left: 1.117405e-01	ci right 1.206714e-01	k: 2323	n:20000
Cons ci ratio: 2.015165e-02	ci left: 6.475612e-01	ci right 6.607939e-01	k: 13084	n:20000
KS ci ratio: 1.630116e-01	ci left: 2.580547e-02	ci right 3.043309e-02	k: 561	n:20000
AFF2   20000 perm   4 sec   (4488 perm/sec)   p_kst 2.805000e-02   p_cons 6.542000e-01   p_joint 1.161500e-01

Joint ci ratio: 9.054644e-02	ci left: 5.613148e-02	ci right 6.148769e-02	k: 1763	n:30000
Cons ci ratio: 1.713353e-02	ci left: 6.301914e-01	ci right 6.411157e-01	k: 19070	n:30000
KS ci ratio: 1.332622e-01	ci left: 2.616234e-02	ci right 2.992980e-02	k: 840	n:30000
AFF2   30000 perm   7 sec   (4309 perm/sec)   p_kst 2.800000e-02   p_cons 6.356667e-01   p_joint 5.876667e-02

Joint ci ratio: 7.738969e-02	ci left: 5.793762e-02	ci right 6.262646e-02	k: 2410	n:40000
Cons ci ratio: 1.490847e-02	ci left: 6.287309e-01	ci right 6.381998e-01	k: 25339	n:40000
KS ci ratio: 1.155326e-01	ci left: 2.635654e-02	ci right 2.961247e-02	k: 1118	n:40000
AFF2   40000 perm   10 sec   (4178 perm/sec)   p_kst 2.795000e-02   p_cons 6.334750e-01   p_joint 6.025000e-02

Joint ci ratio: 6.991028e-02	ci left: 5.708804e-02	ci right 6.124332e-02	k: 2957	n:50000
Cons ci ratio: 1.332125e-02	ci left: 6.296999e-01	ci right 6.381646e-01	k: 31697	n:50000
KS ci ratio: 1.010812e-01	ci left: 2.772210e-02	ci right 3.069289e-02	k: 1459	n:50000
AFF2   50000 perm   12 sec   (4083 perm/sec)   p_kst 2.918000e-02   p_cons 6.339400e-01   p_joint 5.914000e-02

Joint ci ratio: 6.456287e-02	ci left: 5.601147e-02	ci right 5.976477e-02	k: 3472	n:60000
Cons ci ratio: 1.215294e-02	ci left: 6.303647e-01	ci right 6.380890e-01	k: 38054	n:60000
KS ci ratio: 9.189672e-02	ci left: 2.807910e-02	ci right 3.080000e-02	k: 1765	n:60000
AFF2   60000 perm   15 sec   (3997 perm/sec)   p_kst 2.941667e-02   p_cons 6.342333e-01   p_joint 5.786667e-02

Outputting figure to mutsig2_images.part000000000004/AFF2.6_4075_60000_0.029417_0.63423_0.057867.png
                gene_name: AFF2
               theta_stop: 0.092 
                    nperm: 60000 
                     p_ks: 0.029 
        ci_ks_bounds_left: 0.028 
       ci_ks_bounds_right: 0.031 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.058 
     ci_joint_bounds_left: 0.056 
    ci_joint_bounds_right: 0.060 

Current progress: 32 percent done.
ADAMTS8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.988626e-01	ci left: 3.367125e-02	ci right 4.120130e-02	k: 373	n:10000
Cons ci ratio: 6.251794e-02	ci left: 2.732942e-01	ci right 2.910328e-01	k: 2821	n:10000
KS ci ratio: 4.737275e-01	ci left: 5.196070e-03	ci right 8.501060e-03	k: 67	n:10000
ADAMTS8   10000 perm   2 sec   (4786 perm/sec)   p_kst 6.700000e-03   p_cons 2.821000e-01   p_joint 3.730000e-02

Joint ci ratio: 2.212663e-01	ci left: 1.373916e-02	ci right 1.720379e-02	k: 308	n:20000
Cons ci ratio: 4.457549e-02	ci left: 2.725930e-01	ci right 2.850714e-01	k: 5576	n:20000
KS ci ratio: 3.266248e-01	ci left: 5.983476e-03	ci right 8.363189e-03	k: 142	n:20000
ADAMTS8   20000 perm   5 sec   (4371 perm/sec)   p_kst 7.100000e-03   p_cons 2.788000e-01   p_joint 1.540000e-02

Joint ci ratio: 1.455715e-01	ci left: 2.187970e-02	ci right 2.534674e-02	k: 707	n:30000
Cons ci ratio: 3.783399e-02	ci left: 2.585214e-01	ci right 2.685244e-01	k: 7905	n:30000
KS ci ratio: 2.569179e-01	ci left: 6.710907e-03	ci right 8.719528e-03	k: 230	n:30000
ADAMTS8   30000 perm   7 sec   (4250 perm/sec)   p_kst 7.666667e-03   p_cons 2.635000e-01   p_joint 2.356667e-02

Joint ci ratio: 1.401777e-01	ci left: 1.782941e-02	ci right 2.054103e-02	k: 766	n:40000
Cons ci ratio: 3.271537e-02	ci left: 2.597845e-01	ci right 2.684498e-01	k: 10564	n:40000
KS ci ratio: 2.250905e-01	ci left: 6.677907e-03	ci right 8.394749e-03	k: 300	n:40000
ADAMTS8   40000 perm   10 sec   (4155 perm/sec)   p_kst 7.500000e-03   p_cons 2.641000e-01   p_joint 1.915000e-02

Joint ci ratio: 1.227769e-01	ci left: 1.875200e-02	ci right 2.122417e-02	k: 998	n:50000
Cons ci ratio: 2.830822e-02	ci left: 2.732597e-01	ci right 2.811262e-01	k: 13859	n:50000
KS ci ratio: 1.984902e-01	ci left: 6.971524e-03	ci right 8.526446e-03	k: 386	n:50000
ADAMTS8   50000 perm   12 sec   (4075 perm/sec)   p_kst 7.720000e-03   p_cons 2.771800e-01   p_joint 1.996000e-02

Joint ci ratio: 1.094890e-01	ci left: 1.977027e-02	ci right 2.207640e-02	k: 1254	n:60000
Cons ci ratio: 2.584713e-02	ci left: 2.735213e-01	ci right 2.807003e-01	k: 16626	n:60000
KS ci ratio: 1.820675e-01	ci left: 6.968399e-03	ci right 8.379848e-03	k: 459	n:60000
ADAMTS8   60000 perm   15 sec   (3998 perm/sec)   p_kst 7.650000e-03   p_cons 2.771000e-01   p_joint 2.090000e-02

Joint ci ratio: 1.141367e-01	ci left: 1.562479e-02	ci right 1.752988e-02	k: 1159	n:70000
Cons ci ratio: 2.394275e-02	ci left: 2.735731e-01	ci right 2.802168e-01	k: 19382	n:70000
KS ci ratio: 1.710968e-01	ci left: 6.805803e-03	ci right 8.092675e-03	k: 520	n:70000
ADAMTS8   70000 perm   18 sec   (3921 perm/sec)   p_kst 7.428571e-03   p_cons 2.768857e-01   p_joint 1.655714e-02

Joint ci ratio: 9.523791e-02	ci left: 1.974896e-02	ci right 2.173600e-02	k: 1658	n:80000
Cons ci ratio: 2.238033e-02	ci left: 2.740752e-01	ci right 2.802910e-01	k: 22174	n:80000
KS ci ratio: 1.612000e-01	ci left: 6.745777e-03	ci right 7.940369e-03	k: 586	n:80000
ADAMTS8   80000 perm   21 sec   (3866 perm/sec)   p_kst 7.325000e-03   p_cons 2.771750e-01   p_joint 2.072500e-02

Joint ci ratio: 8.632152e-02	ci left: 2.143220e-02	ci right 2.337653e-02	k: 2015	n:90000
Cons ci ratio: 2.105826e-02	ci left: 2.750525e-01	ci right 2.809174e-01	k: 25018	n:90000
KS ci ratio: 1.496445e-01	ci left: 7.000182e-03	ci right 8.143012e-03	k: 680	n:90000
ADAMTS8   90000 perm   24 sec   (3798 perm/sec)   p_kst 7.555556e-03   p_cons 2.779778e-01   p_joint 2.238889e-02

Joint ci ratio: 9.148191e-02	ci left: 1.720453e-02	ci right 1.886360e-02	k: 1802	n:100000
Cons ci ratio: 2.091129e-02	ci left: 2.573033e-01	ci right 2.627506e-01	k: 26002	n:100000
KS ci ratio: 1.412771e-01	ci left: 7.099999e-03	ci right 8.188851e-03	k: 763	n:100000
ADAMTS8   100000 perm   27 sec   (3734 perm/sec)   p_kst 7.630000e-03   p_cons 2.600200e-01   p_joint 1.802000e-02

Joint ci ratio: 9.026891e-02	ci left: 1.609316e-02	ci right 1.762338e-02	k: 1853	n:110000
Cons ci ratio: 1.994534e-02	ci left: 2.572919e-01	ci right 2.624844e-01	k: 28587	n:110000
KS ci ratio: 1.361299e-01	ci left: 6.972266e-03	ci right 7.999412e-03	k: 822	n:110000
ADAMTS8   110000 perm   30 sec   (3674 perm/sec)   p_kst 7.472727e-03   p_cons 2.598818e-01   p_joint 1.684545e-02

Joint ci ratio: 9.053199e-02	ci left: 1.468642e-02	ci right 1.608715e-02	k: 1845	n:120000
Cons ci ratio: 1.910942e-02	ci left: 2.571378e-01	ci right 2.621072e-01	k: 31154	n:120000
KS ci ratio: 1.286712e-01	ci left: 7.180924e-03	ci right 8.176423e-03	k: 920	n:120000
ADAMTS8   120000 perm   33 sec   (3604 perm/sec)   p_kst 7.666667e-03   p_cons 2.596167e-01   p_joint 1.537500e-02

Joint ci ratio: 8.177446e-02	ci left: 1.665846e-02	ci right 1.808626e-02	k: 2257	n:130000
Cons ci ratio: 1.801294e-02	ci left: 2.646119e-01	ci right 2.694293e-01	k: 34712	n:130000
KS ci ratio: 1.237954e-01	ci left: 7.179804e-03	ci right 8.134662e-03	k: 994	n:130000
ADAMTS8   130000 perm   37 sec   (3553 perm/sec)   p_kst 7.646154e-03   p_cons 2.670154e-01   p_joint 1.736154e-02

Joint ci ratio: 7.383559e-02	ci left: 1.900650e-02	ci right 2.047063e-02	k: 2762	n:140000
Cons ci ratio: 1.734828e-02	ci left: 2.649119e-01	ci right 2.695549e-01	k: 37412	n:140000
KS ci ratio: 1.198878e-01	ci left: 7.124009e-03	ci right 8.039420e-03	k: 1060	n:140000
ADAMTS8   140000 perm   40 sec   (3500 perm/sec)   p_kst 7.571429e-03   p_cons 2.672286e-01   p_joint 1.972857e-02

Joint ci ratio: 7.285758e-02	ci left: 1.824305e-02	ci right 1.962896e-02	k: 2839	n:150000
Cons ci ratio: 1.673820e-02	ci left: 2.655004e-01	ci right 2.699885e-01	k: 40161	n:150000
KS ci ratio: 1.172755e-01	ci left: 6.959549e-03	ci right 7.832988e-03	k: 1108	n:150000
ADAMTS8   150000 perm   43 sec   (3449 perm/sec)   p_kst 7.386667e-03   p_cons 2.677400e-01   p_joint 1.892667e-02

Joint ci ratio: 7.307197e-02	ci left: 1.702270e-02	ci right 1.831986e-02	k: 2826	n:160000
Cons ci ratio: 1.620914e-02	ci left: 2.655129e-01	ci right 2.698580e-01	k: 42829	n:160000
KS ci ratio: 1.133554e-01	ci left: 6.998025e-03	ci right 7.844972e-03	k: 1186	n:160000
ADAMTS8   160000 perm   47 sec   (3401 perm/sec)   p_kst 7.412500e-03   p_cons 2.676812e-01   p_joint 1.766250e-02

Joint ci ratio: 7.148228e-02	ci left: 1.676062e-02	ci right 1.800886e-02	k: 2954	n:170000
Cons ci ratio: 1.573411e-02	ci left: 2.653558e-01	ci right 2.695698e-01	k: 45468	n:170000
KS ci ratio: 1.101553e-01	ci left: 6.986629e-03	ci right 7.806776e-03	k: 1256	n:170000
ADAMTS8   170000 perm   51 sec   (3354 perm/sec)   p_kst 7.388235e-03   p_cons 2.674588e-01   p_joint 1.737647e-02

Joint ci ratio: 7.180203e-02	ci left: 1.570368e-02	ci right 1.687865e-02	k: 2931	n:180000
Cons ci ratio: 1.528857e-02	ci left: 2.654727e-01	ci right 2.695681e-01	k: 48153	n:180000
KS ci ratio: 1.068071e-01	ci left: 7.030877e-03	ci right 7.829554e-03	k: 1336	n:180000
ADAMTS8   180000 perm   55 sec   (3301 perm/sec)   p_kst 7.422222e-03   p_cons 2.675167e-01   p_joint 1.628333e-02

Joint ci ratio: 7.019761e-02	ci left: 1.558021e-02	ci right 1.671883e-02	k: 3067	n:190000
Cons ci ratio: 1.488904e-02	ci left: 2.653110e-01	ci right 2.692961e-01	k: 50787	n:190000
KS ci ratio: 1.044170e-01	ci left: 6.978517e-03	ci right 7.752417e-03	k: 1398	n:190000
ADAMTS8   190000 perm   58 sec   (3251 perm/sec)   p_kst 7.357895e-03   p_cons 2.673000e-01   p_joint 1.614211e-02

Joint ci ratio: 6.881622e-02	ci left: 1.541529e-02	ci right 1.651880e-02	k: 3192	n:200000
Cons ci ratio: 1.452318e-02	ci left: 2.650621e-01	ci right 2.689447e-01	k: 53400	n:200000
KS ci ratio: 1.011055e-01	ci left: 7.082661e-03	ci right 7.841720e-03	k: 1491	n:200000
ADAMTS8   200000 perm   62 sec   (3210 perm/sec)   p_kst 7.455000e-03   p_cons 2.670000e-01   p_joint 1.596000e-02

Joint ci ratio: 6.911808e-02	ci left: 1.456401e-02	ci right 1.561134e-02	k: 3167	n:210000
Cons ci ratio: 1.416852e-02	ci left: 2.652370e-01	ci right 2.690266e-01	k: 56097	n:210000
KS ci ratio: 9.887890e-02	ci left: 7.061099e-03	ci right 7.800215e-03	k: 1559	n:210000
ADAMTS8   210000 perm   66 sec   (3163 perm/sec)   p_kst 7.423810e-03   p_cons 2.671286e-01   p_joint 1.508095e-02

Outputting figure to mutsig2_images.part000000000004/ADAMTS8.5_2706_210000_0.0074238_0.26713_0.015081.png
                gene_name: ADAMTS8
               theta_stop: 0.099 
                    nperm: 210000 
                     p_ks: 0.0074 
        ci_ks_bounds_left: 0.0071 
       ci_ks_bounds_right: 0.0078 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.015 
     ci_joint_bounds_left: 0.015 
    ci_joint_bounds_right: 0.016 

Current progress: 34 percent done.
ADAT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.953818e-02	ci left: 2.933074e-01	ci right 3.114079e-01	k: 3023	n:10000
Cons ci ratio: 2.689535e-02	ci left: 6.706551e-01	ci right 6.890400e-01	k: 6799	n:10000
KS ci ratio: 7.312811e-02	ci left: 2.149717e-01	ci right 2.313898e-01	k: 2231	n:10000
ADAT1   10000 perm   2 sec   (5570 perm/sec)   p_kst 2.231000e-01   p_cons 6.799000e-01   p_joint 3.023000e-01

Outputting figure to mutsig2_images.part000000000004/ADAT1.5_1545_10000_0.2231_0.6799_0.3023.png
                gene_name: ADAT1
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 36 percent done.
ADORA2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.973631e-02	ci left: 2.919197e-01	ci right 3.099964e-01	k: 3009	n:10000
Cons ci ratio: 9.069448e-02	ci left: 1.502147e-01	ci right 1.645855e-01	k: 1573	n:10000
KS ci ratio: 5.705138e-02	ci left: 3.114560e-01	ci right 3.298486e-01	k: 3206	n:10000
ADORA2A   10000 perm   2 sec   (6020 perm/sec)   p_kst 3.206000e-01   p_cons 1.573000e-01   p_joint 3.009000e-01

Outputting figure to mutsig2_images.part000000000004/ADORA2A.5_1247_10000_0.3206_0.1573_0.3009.png
                gene_name: ADORA2A
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 38 percent done.
AFF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.024244e-02	ci left: 3.687815e-01	ci right 3.878894e-01	k: 3783	n:10000
Cons ci ratio: 1.709886e-03	ci left: 9.971567e-01	ci right 9.989329e-01	k: 9982	n:10000
KS ci ratio: 8.018115e-02	ci left: 1.851083e-01	ci right 2.006710e-01	k: 1928	n:10000
AFF4   10000 perm   2 sec   (4728 perm/sec)   p_kst 1.928000e-01   p_cons 9.982000e-01   p_joint 3.783000e-01

Outputting figure to mutsig2_images.part000000000004/AFF4.5_3572_10000_0.1928_0.9982_0.3783.png
                gene_name: AFF4
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 40 percent done.
ADAR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.098973e-01	ci left: 3.015459e-02	ci right 3.732038e-02	k: 336	n:10000
Cons ci ratio: 9.197123e-03	ci left: 9.433622e-01	ci right 9.521746e-01	k: 9479	n:10000
KS ci ratio: 3.254388e-01	ci left: 1.197339e-02	ci right 1.671572e-02	k: 142	n:10000
ADAR   10000 perm   2 sec   (4886 perm/sec)   p_kst 1.420000e-02   p_cons 9.479000e-01   p_joint 3.360000e-02

Joint ci ratio: 1.350876e-01	ci left: 3.766484e-02	ci right 4.316980e-02	k: 807	n:20000
Cons ci ratio: 6.441495e-03	ci left: 9.456545e-01	ci right 9.518142e-01	k: 18976	n:20000
KS ci ratio: 2.321934e-01	ci left: 1.241764e-02	ci right 1.572585e-02	k: 280	n:20000
ADAR   20000 perm   5 sec   (4423 perm/sec)   p_kst 1.400000e-02   p_cons 9.488000e-01   p_joint 4.035000e-02

Joint ci ratio: 1.003877e-01	ci left: 4.593359e-02	ci right 5.082101e-02	k: 1450	n:30000
Cons ci ratio: 5.427929e-03	ci left: 9.430074e-01	ci right 9.481725e-01	k: 28369	n:30000
KS ci ratio: 1.944396e-01	ci left: 1.206606e-02	ci right 1.469610e-02	k: 400	n:30000
ADAR   30000 perm   7 sec   (4204 perm/sec)   p_kst 1.333333e-02   p_cons 9.456333e-01   p_joint 4.833333e-02

Joint ci ratio: 9.567682e-02	ci left: 3.834483e-02	ci right 4.222227e-02	k: 1610	n:40000
Cons ci ratio: 4.557457e-03	ci left: 9.465183e-01	ci right 9.508663e-01	k: 37949	n:40000
KS ci ratio: 1.726398e-01	ci left: 1.162564e-02	ci right 1.384594e-02	k: 508	n:40000
ADAR   40000 perm   10 sec   (4068 perm/sec)   p_kst 1.270000e-02   p_cons 9.487250e-01   p_joint 4.025000e-02

Joint ci ratio: 8.581509e-02	ci left: 3.833830e-02	ci right 4.179536e-02	k: 2002	n:50000
Cons ci ratio: 4.081388e-03	ci left: 9.466283e-01	ci right 9.505194e-01	k: 47430	n:50000
KS ci ratio: 1.534701e-01	ci left: 1.189078e-02	ci right 1.388637e-02	k: 643	n:50000
ADAR   50000 perm   13 sec   (3997 perm/sec)   p_kst 1.286000e-02   p_cons 9.486000e-01   p_joint 4.004000e-02

Joint ci ratio: 8.030042e-02	ci left: 3.666397e-02	ci right 3.974757e-02	k: 2291	n:60000
Cons ci ratio: 3.719315e-03	ci left: 9.469724e-01	ci right 9.505174e-01	k: 56926	n:60000
KS ci ratio: 1.412888e-01	ci left: 1.177106e-02	ci right 1.357653e-02	k: 759	n:60000
ADAR   60000 perm   15 sec   (3939 perm/sec)   p_kst 1.265000e-02   p_cons 9.487667e-01   p_joint 3.818333e-02

Joint ci ratio: 8.082009e-02	ci left: 3.119865e-02	ci right 3.384028e-02	k: 2275	n:70000
Cons ci ratio: 3.442679e-03	ci left: 9.471269e-01	ci right 9.504072e-01	k: 66415	n:70000
KS ci ratio: 1.308580e-01	ci left: 1.182829e-02	ci right 1.349818e-02	k: 885	n:70000
ADAR   70000 perm   18 sec   (3879 perm/sec)   p_kst 1.264286e-02   p_cons 9.487857e-01   p_joint 3.250000e-02

Joint ci ratio: 7.651950e-02	ci left: 3.054578e-02	ci right 3.298834e-02	k: 2540	n:80000
Cons ci ratio: 3.211937e-03	ci left: 9.474909e-01	ci right 9.505514e-01	k: 75923	n:80000
KS ci ratio: 1.226873e-01	ci left: 1.182642e-02	ci right 1.338422e-02	k: 1007	n:80000
ADAR   80000 perm   21 sec   (3815 perm/sec)   p_kst 1.258750e-02   p_cons 9.490375e-01   p_joint 3.175000e-02

Joint ci ratio: 7.247952e-02	ci left: 3.033569e-02	ci right 3.262797e-02	k: 2832	n:90000
Cons ci ratio: 3.022076e-03	ci left: 9.477791e-01	ci right 9.506586e-01	k: 85431	n:90000
KS ci ratio: 1.151067e-01	ci left: 1.198941e-02	ci right 1.346447e-02	k: 1144	n:90000
ADAR   90000 perm   24 sec   (3757 perm/sec)   p_kst 1.271111e-02   p_cons 9.492333e-01   p_joint 3.146667e-02

Joint ci ratio: 6.400806e-02	ci left: 3.499169e-02	ci right 3.731531e-02	k: 3614	n:100000
Cons ci ratio: 2.858730e-03	ci left: 9.481348e-01	ci right 9.508590e-01	k: 94951	n:100000
KS ci ratio: 1.096909e-01	ci left: 1.191784e-02	ci right 1.331064e-02	k: 1260	n:100000
ADAR   100000 perm   27 sec   (3703 perm/sec)   p_kst 1.260000e-02   p_cons 9.495100e-01   p_joint 3.614000e-02

Joint ci ratio: 5.921814e-02	ci left: 3.717349e-02	ci right 3.945094e-02	k: 4213	n:110000
Cons ci ratio: 2.723890e-03	ci left: 9.482631e-01	ci right 9.508586e-01	k: 104453	n:110000
KS ci ratio: 1.045138e-01	ci left: 1.196689e-02	ci right 1.329535e-02	k: 1388	n:110000
ADAR   110000 perm   30 sec   (3651 perm/sec)   p_kst 1.261818e-02   p_cons 9.495727e-01   p_joint 3.830000e-02

Joint ci ratio: 6.003620e-02	ci left: 3.327736e-02	ci right 3.534522e-02	k: 4116	n:120000
Cons ci ratio: 2.612836e-03	ci left: 9.481364e-01	ci right 9.506252e-01	k: 113927	n:120000
KS ci ratio: 1.001740e-01	ci left: 1.196842e-02	ci right 1.323863e-02	k: 1511	n:120000
ADAR   120000 perm   33 sec   (3597 perm/sec)   p_kst 1.259167e-02   p_cons 9.493917e-01   p_joint 3.430000e-02

Joint ci ratio: 6.019373e-02	ci left: 3.064053e-02	ci right 3.254967e-02	k: 4106	n:130000
Cons ci ratio: 2.510101e-03	ci left: 9.481946e-01	ci right 9.505853e-01	k: 123422	n:130000
KS ci ratio: 9.609566e-02	ci left: 1.203075e-02	ci right 1.325267e-02	k: 1642	n:130000
ADAR   130000 perm   37 sec   (3549 perm/sec)   p_kst 1.263077e-02   p_cons 9.494000e-01   p_joint 3.158462e-02

Outputting figure to mutsig2_images.part000000000004/ADAR.4_3741_130000_0.012631_0.9494_0.031585.png
                gene_name: ADAR
               theta_stop: 0.096 
                    nperm: 130000 
                     p_ks: 0.013 
        ci_ks_bounds_left: 0.012 
       ci_ks_bounds_right: 0.013 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.032 
     ci_joint_bounds_left: 0.031 
    ci_joint_bounds_right: 0.033 

Current progress: 42 percent done.
ADCY4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.181399e-02	ci left: 1.790063e-01	ci right 1.943767e-01	k: 1866	n:10000
Cons ci ratio: 3.342233e-02	ci left: 5.692514e-01	ci right 5.887025e-01	k: 5790	n:10000
KS ci ratio: 1.301200e-01	ci left: 7.776183e-02	ci right 8.868240e-02	k: 831	n:10000
ADCY4   10000 perm   2 sec   (5126 perm/sec)   p_kst 8.310000e-02   p_cons 5.790000e-01   p_joint 1.866000e-01

Joint ci ratio: 6.048682e-02	ci left: 1.682746e-01	ci right 1.788205e-01	k: 3470	n:20000
Cons ci ratio: 2.281758e-02	ci left: 5.892110e-01	ci right 6.028611e-01	k: 11921	n:20000
KS ci ratio: 9.156119e-02	ci left: 8.009344e-02	ci right 8.782802e-02	k: 1678	n:20000
ADCY4   20000 perm   4 sec   (4564 perm/sec)   p_kst 8.390000e-02   p_cons 5.960500e-01   p_joint 1.735000e-01

Outputting figure to mutsig2_images.part000000000004/ADCY4.4_3334_20000_0.0839_0.59605_0.1735.png
                gene_name: ADCY4
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.084 
        ci_ks_bounds_left: 0.080 
       ci_ks_bounds_right: 0.088 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 44 percent done.
ADIPOR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.423184e-01	ci left: 2.240510e-02	ci right 2.867545e-02	k: 254	n:10000
Cons ci ratio: 7.677370e-01	ci left: 1.618501e-03	ci right 3.688296e-03	k: 25	n:10000
KS ci ratio: 7.984796e-02	ci left: 1.863882e-01	ci right 2.019904e-01	k: 1941	n:10000
ADIPOR2   10000 perm   2 sec   (6212 perm/sec)   p_kst 1.941000e-01   p_cons 2.500000e-03   p_joint 2.540000e-02

Joint ci ratio: 1.392719e-01	ci left: 3.544087e-02	ci right 4.079449e-02	k: 761	n:20000
Cons ci ratio: 4.970559e-01	ci left: 2.333787e-03	ci right 3.916152e-03	k: 61	n:20000
KS ci ratio: 5.628200e-02	ci left: 1.896770e-01	ci right 2.007117e-01	k: 3903	n:20000
ADIPOR2   20000 perm   4 sec   (5527 perm/sec)   p_kst 1.951500e-01   p_cons 3.050000e-03   p_joint 3.805000e-02

Joint ci ratio: 8.616707e-02	ci left: 6.174596e-02	ci right 6.733873e-02	k: 1935	n:30000
Cons ci ratio: 4.036765e-01	ci left: 2.502807e-03	ci right 3.796384e-03	k: 93	n:30000
KS ci ratio: 4.591043e-02	ci left: 1.909922e-01	ci right 2.000001e-01	k: 5864	n:30000
ADIPOR2   30000 perm   6 sec   (5275 perm/sec)   p_kst 1.954667e-01   p_cons 3.100000e-03   p_joint 6.450000e-02

Joint ci ratio: 6.610753e-02	ci left: 7.812265e-02	ci right 8.348839e-02	k: 3231	n:40000
Cons ci ratio: 3.558198e-01	ci left: 2.487905e-03	ci right 3.586211e-03	k: 120	n:40000
KS ci ratio: 3.969030e-02	ci left: 1.921443e-01	ci right 1.999499e-01	k: 7841	n:40000
ADIPOR2   40000 perm   8 sec   (5097 perm/sec)   p_kst 1.960250e-01   p_cons 3.000000e-03   p_joint 8.077500e-02

Joint ci ratio: 7.013738e-02	ci left: 5.673397e-02	ci right 6.087744e-02	k: 2939	n:50000
Cons ci ratio: 3.133581e-01	ci left: 2.631774e-03	ci right 3.627299e-03	k: 155	n:50000
KS ci ratio: 3.545178e-02	ci left: 1.929851e-01	ci right 1.999702e-01	k: 9823	n:50000
ADIPOR2   50000 perm   10 sec   (4963 perm/sec)   p_kst 1.964600e-01   p_cons 3.100000e-03   p_joint 5.878000e-02

Joint ci ratio: 6.432728e-02	ci left: 5.640540e-02	ci right 6.017080e-02	k: 3496	n:60000
Cons ci ratio: 2.901263e-01	ci left: 2.593710e-03	ci right 3.488764e-03	k: 181	n:60000
KS ci ratio: 3.249471e-02	ci left: 1.920185e-01	ci right 1.983777e-01	k: 11711	n:60000
ADIPOR2   60000 perm   12 sec   (4831 perm/sec)   p_kst 1.951833e-01   p_cons 3.016667e-03   p_joint 5.826667e-02

Joint ci ratio: 6.322447e-02	ci left: 5.040890e-02	ci right 5.371407e-02	k: 3643	n:70000
Cons ci ratio: 2.700977e-01	ci left: 2.595116e-03	ci right 3.418367e-03	k: 209	n:70000
KS ci ratio: 3.013498e-02	ci left: 1.917296e-01	ci right 1.976100e-01	k: 13626	n:70000
ADIPOR2   70000 perm   15 sec   (4715 perm/sec)   p_kst 1.946571e-01   p_cons 2.985714e-03   p_joint 5.204286e-02

Joint ci ratio: 5.795123e-02	ci left: 5.253005e-02	ci right 5.567738e-02	k: 4327	n:80000
Cons ci ratio: 2.575428e-01	ci left: 2.515860e-03	ci right 3.270906e-03	k: 230	n:80000
KS ci ratio: 2.784363e-02	ci left: 1.957905e-01	ci right 2.013314e-01	k: 15884	n:80000
ADIPOR2   80000 perm   17 sec   (4611 perm/sec)   p_kst 1.985500e-01   p_cons 2.875000e-03   p_joint 5.408750e-02

Joint ci ratio: 5.438942e-02	ci left: 5.308061e-02	ci right 5.605929e-02	k: 4910	n:90000
Cons ci ratio: 2.418243e-01	ci left: 2.559238e-03	ci right 3.273399e-03	k: 261	n:90000
KS ci ratio: 2.619604e-02	ci left: 1.966169e-01	ci right 2.018469e-01	k: 17930	n:90000
ADIPOR2   90000 perm   20 sec   (4513 perm/sec)   p_kst 1.992222e-01   p_cons 2.900000e-03   p_joint 5.455556e-02

Joint ci ratio: 5.481670e-02	ci left: 4.731484e-02	ci right 4.999142e-02	k: 4864	n:100000
Cons ci ratio: 2.314616e-01	ci left: 2.529085e-03	ci right 3.200266e-03	k: 285	n:100000
KS ci ratio: 2.481857e-02	ci left: 1.971762e-01	ci right 2.021412e-01	k: 19965	n:100000
ADIPOR2   100000 perm   23 sec   (4418 perm/sec)   p_kst 1.996500e-01   p_cons 2.850000e-03   p_joint 4.864000e-02

Joint ci ratio: 5.220675e-02	ci left: 4.748029e-02	ci right 5.003448e-02	k: 5362	n:110000
Cons ci ratio: 2.195037e-01	ci left: 2.573662e-03	ci right 3.216628e-03	k: 317	n:110000
KS ci ratio: 2.367072e-02	ci left: 1.971961e-01	ci right 2.019288e-01	k: 21951	n:110000
ADIPOR2   110000 perm   25 sec   (4338 perm/sec)   p_kst 1.995545e-01   p_cons 2.881818e-03   p_joint 4.874545e-02

Joint ci ratio: 5.220108e-02	ci left: 4.371049e-02	ci right 4.606157e-02	k: 5385	n:120000
Cons ci ratio: 2.101313e-01	ci left: 2.587862e-03	ci right 3.203218e-03	k: 346	n:120000
KS ci ratio: 2.267165e-02	ci left: 1.971757e-01	ci right 2.017055e-01	k: 23932	n:120000
ADIPOR2   120000 perm   28 sec   (4257 perm/sec)   p_kst 1.994333e-01   p_cons 2.883333e-03   p_joint 4.487500e-02

Joint ci ratio: 5.032879e-02	ci left: 4.346141e-02	ci right 4.571281e-02	k: 5795	n:130000
Cons ci ratio: 2.015965e-01	ci left: 2.607675e-03	ci right 3.199459e-03	k: 376	n:130000
KS ci ratio: 2.178664e-02	ci left: 1.972003e-01	ci right 2.015516e-01	k: 25918	n:130000
ADIPOR2   130000 perm   31 sec   (4182 perm/sec)   p_kst 1.993692e-01   p_cons 2.892308e-03   p_joint 4.457692e-02

Joint ci ratio: 5.123896e-02	ci left: 3.909942e-02	ci right 4.116254e-02	k: 5617	n:140000
Cons ci ratio: 1.945037e-01	ci left: 2.611498e-03	ci right 3.180829e-03	k: 404	n:140000
KS ci ratio: 2.099026e-02	ci left: 1.973382e-01	ci right 2.015314e-01	k: 27920	n:140000
ADIPOR2   140000 perm   34 sec   (4113 perm/sec)   p_kst 1.994286e-01   p_cons 2.885714e-03   p_joint 4.012143e-02

Joint ci ratio: 4.937047e-02	ci left: 3.933668e-02	ci right 4.133447e-02	k: 6049	n:150000
Cons ci ratio: 1.892092e-01	ci left: 2.583363e-03	ci right 3.129468e-03	k: 427	n:150000
KS ci ratio: 2.026725e-02	ci left: 1.975864e-01	ci right 2.016385e-01	k: 29941	n:150000
ADIPOR2   150000 perm   37 sec   (4046 perm/sec)   p_kst 1.996067e-01   p_cons 2.846667e-03   p_joint 4.032667e-02

Joint ci ratio: 4.787367e-02	ci left: 3.925509e-02	ci right 4.118661e-02	k: 6434	n:160000
Cons ci ratio: 1.829067e-01	ci left: 2.600674e-03	ci right 3.130096e-03	k: 457	n:160000
KS ci ratio: 1.963257e-02	ci left: 1.975068e-01	ci right 2.014290e-01	k: 31914	n:160000
ADIPOR2   160000 perm   40 sec   (3980 perm/sec)   p_kst 1.994625e-01   p_cons 2.856250e-03   p_joint 4.021250e-02

Joint ci ratio: 4.650522e-02	ci left: 3.918391e-02	ci right 4.105534e-02	k: 6819	n:170000
Cons ci ratio: 1.770129e-01	ci left: 2.621835e-03	ci right 3.136527e-03	k: 488	n:170000
KS ci ratio: 1.903927e-02	ci left: 1.976846e-01	ci right 2.014904e-01	k: 33929	n:170000
ADIPOR2   170000 perm   43 sec   (3916 perm/sec)   p_kst 1.995824e-01   p_cons 2.870588e-03   p_joint 4.011176e-02

Joint ci ratio: 4.630223e-02	ci left: 3.740707e-02	ci right 3.918562e-02	k: 6892	n:180000
Cons ci ratio: 1.726563e-01	ci left: 2.608988e-03	ci right 3.107238e-03	k: 513	n:180000
KS ci ratio: 1.849220e-02	ci left: 1.979217e-01	ci right 2.016213e-01	k: 35958	n:180000
ADIPOR2   180000 perm   47 sec   (3855 perm/sec)   p_kst 1.997667e-01   p_cons 2.850000e-03   p_joint 3.828889e-02

Joint ci ratio: 4.516077e-02	ci left: 3.728007e-02	ci right 3.900774e-02	k: 7246	n:190000
Cons ci ratio: 1.692372e-01	ci left: 2.577467e-03	ci right 3.058954e-03	k: 534	n:190000
KS ci ratio: 1.801373e-02	ci left: 1.977103e-01	ci right 2.013094e-01	k: 37906	n:190000
ADIPOR2   190000 perm   50 sec   (3796 perm/sec)   p_kst 1.995053e-01   p_cons 2.810526e-03   p_joint 3.813684e-02

Joint ci ratio: 4.412389e-02	ci left: 3.712669e-02	ci right 3.880674e-02	k: 7592	n:200000
Cons ci ratio: 1.649752e-01	ci left: 2.582739e-03	ci right 3.051855e-03	k: 562	n:200000
KS ci ratio: 1.756396e-02	ci left: 1.976408e-01	ci right 2.011479e-01	k: 39878	n:200000
ADIPOR2   200000 perm   53 sec   (3740 perm/sec)   p_kst 1.993900e-01   p_cons 2.810000e-03   p_joint 3.796000e-02

Joint ci ratio: 4.311014e-02	ci left: 3.706373e-02	ci right 3.870144e-02	k: 7954	n:210000
Cons ci ratio: 1.619847e-01	ci left: 2.555657e-03	ci right 3.010621e-03	k: 583	n:210000
KS ci ratio: 1.714782e-02	ci left: 1.975505e-01	ci right 2.009721e-01	k: 41844	n:210000
ADIPOR2   210000 perm   57 sec   (3687 perm/sec)   p_kst 1.992571e-01   p_cons 2.776190e-03   p_joint 3.787619e-02

Joint ci ratio: 4.101342e-02	ci left: 3.904992e-02	ci right 4.068950e-02	k: 8770	n:220000
Cons ci ratio: 1.587568e-01	ci left: 2.544203e-03	ci right 2.987241e-03	k: 607	n:220000
KS ci ratio: 1.676422e-02	ci left: 1.973878e-01	ci right 2.007293e-01	k: 43792	n:220000
ADIPOR2   220000 perm   61 sec   (3617 perm/sec)   p_kst 1.990545e-01   p_cons 2.759091e-03   p_joint 3.986364e-02

Joint ci ratio: 3.677568e-02	ci left: 4.620757e-02	ci right 4.794300e-02	k: 10826	n:230000
Cons ci ratio: 1.548569e-01	ci left: 2.563082e-03	ci right 2.997426e-03	k: 638	n:230000
KS ci ratio: 1.640191e-02	ci left: 1.973050e-01	ci right 2.005722e-01	k: 45755	n:230000
ADIPOR2   230000 perm   64 sec   (3569 perm/sec)   p_kst 1.989348e-01   p_cons 2.773913e-03   p_joint 4.706957e-02

Joint ci ratio: 3.604448e-02	ci left: 4.611950e-02	ci right 4.781647e-02	k: 11271	n:240000
Cons ci ratio: 1.518000e-01	ci left: 2.560463e-03	ci right 2.985020e-03	k: 664	n:240000
KS ci ratio: 1.606988e-02	ci left: 1.970761e-01	ci right 2.002729e-01	k: 47681	n:240000
ADIPOR2   240000 perm   68 sec   (3515 perm/sec)   p_kst 1.986708e-01   p_cons 2.766667e-03   p_joint 4.696250e-02

Joint ci ratio: 3.658418e-02	ci left: 4.310417e-02	ci right 4.471442e-02	k: 10976	n:250000
Cons ci ratio: 1.490255e-01	ci left: 2.554281e-03	ci right 2.969381e-03	k: 689	n:250000
KS ci ratio: 1.574951e-02	ci left: 1.970217e-01	ci right 2.001533e-01	k: 49646	n:250000
ADIPOR2   250000 perm   72 sec   (3453 perm/sec)   p_kst 1.985840e-01   p_cons 2.756000e-03   p_joint 4.390400e-02

Joint ci ratio: 3.257765e-02	ci left: 5.189003e-02	ci right 5.361227e-02	k: 13714	n:260000
Cons ci ratio: 1.467066e-01	ci left: 2.537522e-03	ci right 2.942920e-03	k: 711	n:260000
KS ci ratio: 1.544850e-02	ci left: 1.969529e-01	ci right 2.000230e-01	k: 51606	n:260000
ADIPOR2   260000 perm   76 sec   (3405 perm/sec)   p_kst 1.984846e-01   p_cons 2.734615e-03   p_joint 5.274615e-02

Joint ci ratio: 3.233033e-02	ci left: 5.080162e-02	ci right 5.247469e-02	k: 13941	n:270000
Cons ci ratio: 1.440018e-01	ci left: 2.539903e-03	ci right 2.937557e-03	k: 738	n:270000
KS ci ratio: 1.517011e-02	ci left: 1.967642e-01	ci right 1.997756e-01	k: 53532	n:270000
ADIPOR2   270000 perm   80 sec   (3358 perm/sec)   p_kst 1.982667e-01   p_cons 2.733333e-03   p_joint 5.163333e-02

Joint ci ratio: 3.123995e-02	ci left: 5.240700e-02	ci right 5.407369e-02	k: 14906	n:280000
Cons ci ratio: 1.414412e-01	ci left: 2.542178e-03	ci right 2.932513e-03	k: 765	n:280000
KS ci ratio: 1.488684e-02	ci left: 1.970026e-01	ci right 1.999608e-01	k: 55574	n:280000
ADIPOR2   280000 perm   85 sec   (3310 perm/sec)   p_kst 1.984786e-01   p_cons 2.732143e-03   p_joint 5.323571e-02

Joint ci ratio: 3.670335e-02	ci left: 3.714980e-02	ci right 3.854221e-02	k: 10974	n:290000
Cons ci ratio: 1.385752e-01	ci left: 2.560998e-03	ci right 2.945598e-03	k: 797	n:290000
KS ci ratio: 1.462266e-02	ci left: 1.971424e-01	ci right 2.000498e-01	k: 57592	n:290000
ADIPOR2   290000 perm   89 sec   (3264 perm/sec)   p_kst 1.985931e-01   p_cons 2.748276e-03   p_joint 3.784138e-02

Joint ci ratio: 3.614181e-02	ci left: 3.705097e-02	ci right 3.841798e-02	k: 11319	n:300000
Cons ci ratio: 1.363718e-01	ci left: 2.559317e-03	ci right 2.937057e-03	k: 823	n:300000
KS ci ratio: 1.437959e-02	ci left: 1.971072e-01	ci right 1.999653e-01	k: 59560	n:300000
ADIPOR2   300000 perm   93 sec   (3224 perm/sec)   p_kst 1.985333e-01   p_cons 2.743333e-03   p_joint 3.773000e-02

Joint ci ratio: 3.556253e-02	ci left: 3.704501e-02	ci right 3.838945e-02	k: 11691	n:310000
Cons ci ratio: 1.350693e-01	ci left: 2.526616e-03	ci right 2.895681e-03	k: 839	n:310000
KS ci ratio: 1.414911e-02	ci left: 1.970553e-01	ci right 1.998665e-01	k: 61522	n:310000
ADIPOR2   310000 perm   97 sec   (3185 perm/sec)   p_kst 1.984581e-01   p_cons 2.706452e-03   p_joint 3.771290e-02

Joint ci ratio: 3.503287e-02	ci left: 3.699312e-02	ci right 3.831527e-02	k: 12048	n:320000
Cons ci ratio: 1.336469e-01	ci left: 2.502016e-03	ci right 2.863334e-03	k: 857	n:320000
KS ci ratio: 1.392759e-02	ci left: 1.970475e-01	ci right 1.998142e-01	k: 63497	n:320000
ADIPOR2   320000 perm   102 sec   (3146 perm/sec)   p_kst 1.984281e-01   p_cons 2.678125e-03   p_joint 3.765000e-02

Joint ci ratio: 3.451608e-02	ci left: 3.696554e-02	ci right 3.826684e-02	k: 12412	n:330000
Cons ci ratio: 1.316670e-01	ci left: 2.502371e-03	ci right 2.857967e-03	k: 883	n:330000
KS ci ratio: 1.372924e-02	ci left: 1.967383e-01	ci right 1.994610e-01	k: 65372	n:330000
ADIPOR2   330000 perm   106 sec   (3108 perm/sec)   p_kst 1.980970e-01   p_cons 2.675758e-03   p_joint 3.761212e-02

Joint ci ratio: 3.505056e-02	ci left: 3.486010e-02	ci right 3.610666e-02	k: 12063	n:340000
Cons ci ratio: 1.302036e-01	ci left: 2.485667e-03	ci right 2.834660e-03	k: 903	n:340000
KS ci ratio: 1.352446e-02	ci left: 1.967907e-01	ci right 1.994732e-01	k: 67364	n:340000
ADIPOR2   340000 perm   111 sec   (3070 perm/sec)   p_kst 1.981294e-01   p_cons 2.655882e-03   p_joint 3.547941e-02

Joint ci ratio: 3.458206e-02	ci left: 3.479873e-02	ci right 3.602612e-02	k: 12393	n:350000
Cons ci ratio: 1.289280e-01	ci left: 2.464408e-03	ci right 2.806767e-03	k: 921	n:350000
KS ci ratio: 1.333349e-02	ci left: 1.967236e-01	ci right 1.993671e-01	k: 69315	n:350000
ADIPOR2   350000 perm   115 sec   (3033 perm/sec)   p_kst 1.980429e-01   p_cons 2.631429e-03   p_joint 3.540857e-02

Joint ci ratio: 3.411934e-02	ci left: 3.476566e-02	ci right 3.597517e-02	k: 12732	n:360000
Cons ci ratio: 1.270806e-01	ci left: 2.468551e-03	ci right 2.806201e-03	k: 948	n:360000
KS ci ratio: 1.314797e-02	ci left: 1.967187e-01	ci right 1.993250e-01	k: 71287	n:360000
ADIPOR2   360000 perm   120 sec   (2996 perm/sec)   p_kst 1.980194e-01   p_cons 2.633333e-03   p_joint 3.536667e-02

Joint ci ratio: 3.298132e-02	ci left: 3.616883e-02	ci right 3.738439e-02	k: 13606	n:370000
Cons ci ratio: 1.257634e-01	ci left: 2.454177e-03	ci right 2.786122e-03	k: 968	n:370000
KS ci ratio: 1.297495e-02	ci left: 1.965930e-01	ci right 1.991631e-01	k: 73214	n:370000
ADIPOR2   370000 perm   125 sec   (2961 perm/sec)   p_kst 1.978757e-01   p_cons 2.616216e-03   p_joint 3.677297e-02

Joint ci ratio: 3.051548e-02	ci left: 4.098300e-02	ci right 4.225558e-02	k: 15814	n:380000
Cons ci ratio: 1.240469e-01	ci left: 2.458426e-03	ci right 2.786074e-03	k: 995	n:380000
KS ci ratio: 1.280052e-02	ci left: 1.966736e-01	ci right 1.992099e-01	k: 75217	n:380000
ADIPOR2   380000 perm   130 sec   (2928 perm/sec)   p_kst 1.979395e-01   p_cons 2.618421e-03   p_joint 4.161579e-02

Joint ci ratio: 3.063659e-02	ci left: 3.966965e-02	ci right 4.090642e-02	k: 15711	n:390000
Cons ci ratio: 1.222193e-01	ci left: 2.469944e-03	ci right 2.793926e-03	k: 1025	n:390000
KS ci ratio: 1.263958e-02	ci left: 1.965840e-01	ci right 1.990871e-01	k: 77155	n:390000
ADIPOR2   390000 perm   135 sec   (2896 perm/sec)   p_kst 1.978333e-01   p_cons 2.628205e-03   p_joint 4.028462e-02

Joint ci ratio: 2.907872e-02	ci left: 4.282524e-02	ci right 4.409138e-02	k: 17382	n:400000
Cons ci ratio: 1.203560e-01	ci left: 2.485769e-03	ci right 2.806503e-03	k: 1057	n:400000
KS ci ratio: 1.248485e-02	ci left: 1.964917e-01	ci right 1.989627e-01	k: 79090	n:400000
ADIPOR2   400000 perm   140 sec   (2863 perm/sec)   p_kst 1.977250e-01   p_cons 2.642500e-03   p_joint 4.345500e-02

Joint ci ratio: 2.975518e-02	ci left: 4.000760e-02	ci right 4.121841e-02	k: 16650	n:410000
Cons ci ratio: 1.184664e-01	ci left: 2.505592e-03	ci right 2.823452e-03	k: 1091	n:410000
KS ci ratio: 1.233120e-02	ci left: 1.965184e-01	ci right 1.989591e-01	k: 81072	n:410000
ADIPOR2   410000 perm   145 sec   (2830 perm/sec)   p_kst 1.977366e-01   p_cons 2.660976e-03   p_joint 4.060976e-02

Joint ci ratio: 2.940881e-02	ci left: 3.998855e-02	ci right 4.118446e-02	k: 17045	n:420000
Cons ci ratio: 1.172914e-01	ci left: 2.496771e-03	ci right 2.810153e-03	k: 1113	n:420000
KS ci ratio: 1.218218e-02	ci left: 1.965677e-01	ci right 1.989793e-01	k: 83064	n:420000
ADIPOR2   420000 perm   150 sec   (2798 perm/sec)   p_kst 1.977714e-01   p_cons 2.650000e-03   p_joint 4.058333e-02

Joint ci ratio: 2.781857e-02	ci left: 4.352520e-02	ci right 4.475537e-02	k: 18979	n:430000
Cons ci ratio: 1.157936e-01	ci left: 2.504183e-03	ci right 2.814207e-03	k: 1142	n:430000
KS ci ratio: 1.203818e-02	ci left: 1.966219e-01	ci right 1.990055e-01	k: 85059	n:430000
ADIPOR2   430000 perm   155 sec   (2767 perm/sec)   p_kst 1.978116e-01   p_cons 2.655814e-03   p_joint 4.413721e-02

Joint ci ratio: 2.870897e-02	ci left: 4.006613e-02	ci right 4.123538e-02	k: 17885	n:440000
Cons ci ratio: 1.144496e-01	ci left: 2.506867e-03	ci right 2.813377e-03	k: 1169	n:440000
KS ci ratio: 1.189583e-02	ci left: 1.967622e-01	ci right 1.991191e-01	k: 87093	n:440000
ADIPOR2   440000 perm   161 sec   (2737 perm/sec)   p_kst 1.979386e-01   p_cons 2.656818e-03   p_joint 4.064773e-02

Joint ci ratio: 2.842749e-02	ci left: 3.996562e-02	ci right 4.112031e-02	k: 18243	n:450000
Cons ci ratio: 1.136283e-01	ci left: 2.487857e-03	ci right 2.789714e-03	k: 1186	n:450000
KS ci ratio: 1.176451e-02	ci left: 1.967323e-01	ci right 1.990627e-01	k: 89053	n:450000
ADIPOR2   450000 perm   166 sec   (2707 perm/sec)   p_kst 1.978956e-01   p_cons 2.635556e-03   p_joint 4.054000e-02

Joint ci ratio: 2.691292e-02	ci left: 4.349334e-02	ci right 4.468198e-02	k: 20279	n:460000
Cons ci ratio: 1.123576e-01	ci left: 2.490810e-03	ci right 2.789422e-03	k: 1213	n:460000
KS ci ratio: 1.163546e-02	ci left: 1.967581e-01	ci right 1.990630e-01	k: 91038	n:460000
ADIPOR2   460000 perm   172 sec   (2671 perm/sec)   p_kst 1.979087e-01   p_cons 2.636957e-03   p_joint 4.408478e-02

Joint ci ratio: 2.667485e-02	ci left: 4.334352e-02	ci right 4.451743e-02	k: 20646	n:470000
Cons ci ratio: 1.108602e-01	ci left: 2.506068e-03	ci right 2.802244e-03	k: 1246	n:470000
KS ci ratio: 1.150963e-02	ci left: 1.968085e-01	ci right 1.990889e-01	k: 93035	n:470000
ADIPOR2   470000 perm   178 sec   (2641 perm/sec)   p_kst 1.979468e-01   p_cons 2.651064e-03   p_joint 4.392766e-02

Joint ci ratio: 2.637545e-02	ci left: 4.341322e-02	ci right 4.457562e-02	k: 21116	n:480000
Cons ci ratio: 1.097655e-01	ci left: 2.504505e-03	ci right 2.797383e-03	k: 1271	n:480000
KS ci ratio: 1.138735e-02	ci left: 1.968693e-01	ci right 1.991260e-01	k: 95038	n:480000
ADIPOR2   480000 perm   184 sec   (2614 perm/sec)   p_kst 1.979958e-01   p_cons 2.647917e-03   p_joint 4.399167e-02

Joint ci ratio: 2.609476e-02	ci left: 4.345176e-02	ci right 4.460262e-02	k: 21572	n:490000
Cons ci ratio: 1.086606e-01	ci left: 2.505004e-03	ci right 2.794804e-03	k: 1297	n:490000
KS ci ratio: 1.126918e-02	ci left: 1.969196e-01	ci right 1.991533e-01	k: 97037	n:490000
ADIPOR2   490000 perm   189 sec   (2589 perm/sec)   p_kst 1.980347e-01   p_cons 2.646939e-03   p_joint 4.402449e-02

Joint ci ratio: 2.584310e-02	ci left: 4.342322e-02	ci right 4.456207e-02	k: 21995	n:500000
Cons ci ratio: 1.076701e-01	ci left: 2.501605e-03	ci right 2.788206e-03	k: 1321	n:500000
KS ci ratio: 1.115798e-02	ci left: 1.968723e-01	ci right 1.990832e-01	k: 98988	n:500000
ADIPOR2   500000 perm   195 sec   (2562 perm/sec)   p_kst 1.979760e-01   p_cons 2.642000e-03   p_joint 4.399000e-02

Joint ci ratio: 2.563208e-02	ci left: 4.328672e-02	ci right 4.441259e-02	k: 22362	n:510000
Cons ci ratio: 1.068255e-01	ci left: 2.492625e-03	ci right 2.775817e-03	k: 1342	n:510000
KS ci ratio: 1.104742e-02	ci left: 1.969012e-01	ci right 1.990905e-01	k: 100977	n:510000
ADIPOR2   510000 perm   201 sec   (2535 perm/sec)   p_kst 1.979941e-01   p_cons 2.631373e-03   p_joint 4.384706e-02

Joint ci ratio: 2.630481e-02	ci left: 4.041870e-02	ci right 4.149796e-02	k: 21297	n:520000
Cons ci ratio: 1.062351e-01	ci left: 2.472766e-03	ci right 2.752052e-03	k: 1357	n:520000
KS ci ratio: 1.094193e-02	ci left: 1.968754e-01	ci right 1.990433e-01	k: 102938	n:520000
ADIPOR2   520000 perm   207 sec   (2510 perm/sec)   p_kst 1.979577e-01   p_cons 2.609615e-03   p_joint 4.095577e-02

Joint ci ratio: 2.697265e-02	ci left: 3.780739e-02	ci right 3.884295e-02	k: 20311	n:530000
Cons ci ratio: 1.049289e-01	ci left: 2.488568e-03	ci right 2.765970e-03	k: 1391	n:530000
KS ci ratio: 1.083574e-02	ci left: 1.969580e-01	ci right 1.991057e-01	k: 104956	n:530000
ADIPOR2   530000 perm   213 sec   (2485 perm/sec)   p_kst 1.980302e-01   p_cons 2.624528e-03   p_joint 3.832264e-02

Joint ci ratio: 2.700402e-02	ci left: 3.705003e-02	ci right 3.806605e-02	k: 20280	n:540000
Cons ci ratio: 1.039625e-01	ci left: 2.489374e-03	ci right 2.764153e-03	k: 1417	n:540000
KS ci ratio: 1.073822e-02	ci left: 1.968713e-01	ci right 1.989986e-01	k: 106884	n:540000
ADIPOR2   540000 perm   219 sec   (2462 perm/sec)   p_kst 1.979333e-01   p_cons 2.624074e-03   p_joint 3.755556e-02

Joint ci ratio: 2.659699e-02	ci left: 3.748900e-02	ci right 3.850133e-02	k: 20896	n:550000
Cons ci ratio: 1.028795e-01	ci left: 2.497248e-03	ci right 2.769851e-03	k: 1447	n:550000
KS ci ratio: 1.064358e-02	ci left: 1.967788e-01	ci right 1.988862e-01	k: 108807	n:550000
ADIPOR2   550000 perm   225 sec   (2440 perm/sec)   p_kst 1.978309e-01   p_cons 2.630909e-03   p_joint 3.799273e-02

Joint ci ratio: 2.532339e-02	ci left: 4.051409e-02	ci right 4.155495e-02	k: 22978	n:560000
Cons ci ratio: 1.022467e-01	ci left: 2.483972e-03	ci right 2.753358e-03	k: 1465	n:560000
KS ci ratio: 1.054678e-02	ci left: 1.968287e-01	ci right 1.989173e-01	k: 110808	n:560000
ADIPOR2   560000 perm   232 sec   (2417 perm/sec)   p_kst 1.978714e-01   p_cons 2.616071e-03   p_joint 4.103214e-02

Joint ci ratio: 2.420753e-02	ci left: 4.344808e-02	ci right 4.451446e-02	k: 25068	n:570000
Cons ci ratio: 1.012499e-01	ci left: 2.489976e-03	ci right 2.757224e-03	k: 1494	n:570000
KS ci ratio: 1.045742e-02	ci left: 1.967298e-01	ci right 1.987996e-01	k: 112725	n:570000
ADIPOR2   570000 perm   238 sec   (2394 perm/sec)   p_kst 1.977632e-01   p_cons 2.621053e-03   p_joint 4.397895e-02

Joint ci ratio: 2.457955e-02	ci left: 4.149377e-02	ci right 4.252805e-02	k: 24365	n:580000
Cons ci ratio: 1.002158e-01	ci left: 2.499148e-03	ci right 2.764480e-03	k: 1525	n:580000
KS ci ratio: 1.036292e-02	ci left: 1.968598e-01	ci right 1.989122e-01	k: 114773	n:580000
ADIPOR2   580000 perm   244 sec   (2373 perm/sec)   p_kst 1.978845e-01   p_cons 2.629310e-03   p_joint 4.200862e-02

Joint ci ratio: 2.380791e-02	ci left: 4.340728e-02	ci right 4.445483e-02	k: 25918	n:590000
Cons ci ratio: 9.924473e-02	ci left: 2.506369e-03	ci right 2.769739e-03	k: 1555	n:590000
KS ci ratio: 1.027499e-02	ci left: 1.968603e-01	ci right 1.988952e-01	k: 116747	n:590000
ADIPOR2   590000 perm   251 sec   (2350 perm/sec)   p_kst 1.978763e-01   p_cons 2.635593e-03   p_joint 4.392881e-02

Outputting figure to mutsig2_images.part000000000004/ADIPOR2.4_1189_590000_0.19788_0.0026356_0.043929.png
                gene_name: ADIPOR2
               theta_stop: 0.099 
                    nperm: 590000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.0026 
      ci_cons_bounds_left: 0.0025 
     ci_cons_bounds_right: 0.0028 
                  p_joint: 0.044 
     ci_joint_bounds_left: 0.043 
    ci_joint_bounds_right: 0.044 

Current progress: 46 percent done.
ADPRH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.655618e-02	ci left: 6.761958e-01	ci right 6.944962e-01	k: 6854	n:10000
KS ci ratio: 1.068561e-02	ci left: 9.257524e-01	ci right 9.357949e-01	k: 9309	n:10000
ADPRH   10000 perm   2 sec   (5609 perm/sec)   p_kst 9.309000e-01   p_cons 6.854000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000004/ADPRH.4_1086_10000_0.9309_0.6854_1.png
                gene_name: ADPRH
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 48 percent done.
ADRB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.719346e-02	ci left: 1.330589e-01	ci right 1.467516e-01	k: 1398	n:10000
Cons ci ratio: 8.717051e-02	ci left: 1.608181e-01	ci right 1.755758e-01	k: 1681	n:10000
KS ci ratio: 8.525785e-02	ci left: 1.670085e-01	ci right 1.819816e-01	k: 1744	n:10000
ADRB2   10000 perm   2 sec   (5819 perm/sec)   p_kst 1.744000e-01   p_cons 1.681000e-01   p_joint 1.398000e-01

Outputting figure to mutsig2_images.part000000000004/ADRB2.4_1246_10000_0.1744_0.1681_0.1398.png
                gene_name: ADRB2
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.15 

Current progress: 50 percent done.
ADAMTSL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.425160e-02	ci left: 8.768454e-01	ci right 8.895304e-01	k: 8833	n:10000
Cons ci ratio: 3.877317e-02	ci left: 4.955504e-01	ci right 5.152465e-01	k: 5054	n:10000
KS ci ratio: 3.269431e-02	ci left: 5.799842e-01	ci right 5.993635e-01	k: 5897	n:10000
ADAMTSL4   10000 perm   2 sec   (5370 perm/sec)   p_kst 5.897000e-01   p_cons 5.054000e-01   p_joint 8.833000e-01

Outputting figure to mutsig2_images.part000000000004/ADAMTSL4.3_3368_10000_0.5897_0.5054_0.8833.png
                gene_name: ADAMTSL4
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 52 percent done.
ADCY9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.261065e-02	ci left: 2.727001e-01	ci right 2.904273e-01	k: 2815	n:10000
Cons ci ratio: 1.666916e-01	ci left: 4.801742e-02	ci right 5.684561e-02	k: 523	n:10000
KS ci ratio: 4.779148e-02	ci left: 3.924695e-01	ci right 4.117875e-01	k: 4021	n:10000
ADCY9   10000 perm   2 sec   (5134 perm/sec)   p_kst 4.021000e-01   p_cons 5.230000e-02   p_joint 2.815000e-01

Joint ci ratio: 3.001775e-02	ci left: 4.532737e-01	ci right 4.671379e-01	k: 9204	n:20000
Cons ci ratio: 1.171068e-01	ci left: 4.993527e-02	ci right 5.619547e-02	k: 1060	n:20000
KS ci ratio: 3.379339e-02	ci left: 3.953441e-01	ci right 4.089844e-01	k: 8043	n:20000
ADCY9   20000 perm   4 sec   (4643 perm/sec)   p_kst 4.021500e-01   p_cons 5.300000e-02   p_joint 4.602000e-01

Joint ci ratio: 2.737905e-02	ci left: 4.003358e-01	ci right 4.114824e-01	k: 12177	n:30000
Cons ci ratio: 9.506734e-02	ci left: 5.107803e-02	ci right 5.620885e-02	k: 1608	n:30000
KS ci ratio: 2.767260e-02	ci left: 3.952145e-01	ci right 4.063381e-01	k: 12023	n:30000
ADCY9   30000 perm   7 sec   (4391 perm/sec)   p_kst 4.007667e-01   p_cons 5.360000e-02   p_joint 4.059000e-01

Outputting figure to mutsig2_images.part000000000004/ADCY9.3_4102_30000_0.40077_0.0536_0.4059.png
                gene_name: ADCY9
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.054 
      ci_cons_bounds_left: 0.051 
     ci_cons_bounds_right: 0.056 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.41 

Current progress: 54 percent done.
ADH4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.138550e-02	ci left: 1.805807e-01	ci right 1.960013e-01	k: 1882	n:10000
Cons ci ratio: 5.168237e-02	ci left: 3.556540e-01	ci right 3.746246e-01	k: 3651	n:10000
KS ci ratio: 1.257984e-01	ci left: 8.290659e-02	ci right 9.413446e-02	k: 884	n:10000
ADH4   10000 perm   2 sec   (6301 perm/sec)   p_kst 8.840000e-02   p_cons 3.651000e-01   p_joint 1.882000e-01

Joint ci ratio: 6.206165e-02	ci left: 1.611140e-01	ci right 1.714832e-01	k: 3325	n:20000
Cons ci ratio: 3.548131e-02	ci left: 3.722196e-01	ci right 3.857156e-01	k: 7579	n:20000
KS ci ratio: 8.700051e-02	ci left: 8.812692e-02	ci right 9.619210e-02	k: 1842	n:20000
ADH4   20000 perm   4 sec   (5564 perm/sec)   p_kst 9.210000e-02   p_cons 3.789500e-01   p_joint 1.662500e-01

Outputting figure to mutsig2_images.part000000000004/ADH4.3_1179_20000_0.0921_0.37895_0.16625.png
                gene_name: ADH4
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.092 
        ci_ks_bounds_left: 0.088 
       ci_ks_bounds_right: 0.096 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 56 percent done.
ADNP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.836432e-02	ci left: 5.008505e-01	ci right 5.205433e-01	k: 5107	n:10000
Cons ci ratio: 9.973603e-02	ci left: 1.270870e-01	ci right 1.405271e-01	k: 1337	n:10000
KS ci ratio: 1.468336e-02	ci left: 8.704028e-01	ci right 8.833768e-01	k: 8770	n:10000
ADNP2   10000 perm   2 sec   (5402 perm/sec)   p_kst 8.770000e-01   p_cons 1.337000e-01   p_joint 5.107000e-01

Outputting figure to mutsig2_images.part000000000004/ADNP2.3_3408_10000_0.877_0.1337_0.5107.png
                gene_name: ADNP2
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 58 percent done.
ADORA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.734750e-03	ci left: 9.890590e-01	ci right 9.928466e-01	k: 9911	n:10000
KS ci ratio: 2.877516e-02	ci left: 6.403578e-01	ci right 6.591549e-01	k: 6498	n:10000
ADORA1   10000 perm   2 sec   (6274 perm/sec)   p_kst 6.498000e-01   p_cons 9.911000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000004/ADORA1.3_989_10000_0.6498_0.9911_1.png
                gene_name: ADORA1
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 60 percent done.
ADRA1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.004015e-02	ci left: 3.706717e-01	ci right 3.897981e-01	k: 3802	n:10000
Cons ci ratio: 8.386407e-02	ci left: 1.717274e-01	ci right 1.868599e-01	k: 1792	n:10000
KS ci ratio: 7.621287e-02	ci left: 2.011651e-01	ci right 2.172047e-01	k: 2091	n:10000
ADRA1B   10000 perm   2 sec   (6140 perm/sec)   p_kst 2.091000e-01   p_cons 1.792000e-01   p_joint 3.802000e-01

Outputting figure to mutsig2_images.part000000000004/ADRA1B.3_1571_10000_0.2091_0.1792_0.3802.png
                gene_name: ADRA1B
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 62 percent done.
ADRA1D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.061076e-02	ci left: 9.266822e-01	ci right 9.366646e-01	k: 9318	n:10000
Cons ci ratio: 4.198116e-02	ci left: 4.558845e-01	ci right 4.755355e-01	k: 4657	n:10000
KS ci ratio: 1.654673e-02	ci left: 8.416271e-01	ci right 8.557691e-01	k: 8488	n:10000
ADRA1D   10000 perm   2 sec   (5908 perm/sec)   p_kst 8.488000e-01   p_cons 4.657000e-01   p_joint 9.318000e-01

Outputting figure to mutsig2_images.part000000000004/ADRA1D.3_1727_10000_0.8488_0.4657_0.9318.png
                gene_name: ADRA1D
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 64 percent done.
AEBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.329487e-02	ci left: 4.406142e-01	ci right 4.602147e-01	k: 4504	n:10000
Cons ci ratio: 4.191375e-02	ci left: 4.566832e-01	ci right 4.763364e-01	k: 4665	n:10000
KS ci ratio: 6.015053e-02	ci left: 2.890454e-01	ci right 3.070724e-01	k: 2980	n:10000
AEBP1   10000 perm   2 sec   (5360 perm/sec)   p_kst 2.980000e-01   p_cons 4.665000e-01   p_joint 4.504000e-01

Outputting figure to mutsig2_images.part000000000004/AEBP1.3_3561_10000_0.298_0.4665_0.4504.png
                gene_name: AEBP1
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 66 percent done.
AES
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.194893e-02	ci left: 1.785143e-01	ci right 1.938689e-01	k: 1861	n:10000
Cons ci ratio: 1.728722e-01	ci left: 4.465920e-02	ci right 5.320602e-02	k: 488	n:10000
KS ci ratio: 4.208251e-02	ci left: 4.546864e-01	ci right 4.743342e-01	k: 4645	n:10000
AES   10000 perm   2 sec   (6521 perm/sec)   p_kst 4.645000e-01   p_cons 4.880000e-02   p_joint 1.861000e-01

Joint ci ratio: 6.438674e-02	ci left: 1.512925e-01	ci right 1.614077e-01	k: 3126	n:20000
Cons ci ratio: 1.192588e-01	ci left: 4.818582e-02	ci right 5.434548e-02	k: 1024	n:20000
KS ci ratio: 2.991826e-02	ci left: 4.549216e-01	ci right 4.687894e-01	k: 9237	n:20000
AES   20000 perm   3 sec   (5731 perm/sec)   p_kst 4.618500e-01   p_cons 5.120000e-02   p_joint 1.563000e-01

Joint ci ratio: 5.427254e-02	ci left: 1.440982e-01	ci right 1.521701e-01	k: 4443	n:30000
Cons ci ratio: 9.813429e-02	ci left: 4.801652e-02	ci right 5.300432e-02	k: 1514	n:30000
KS ci ratio: 2.434464e-02	ci left: 4.579109e-01	ci right 4.692295e-01	k: 13907	n:30000
AES   30000 perm   6 sec   (5450 perm/sec)   p_kst 4.635667e-01   p_cons 5.046667e-02   p_joint 1.481000e-01

Outputting figure to mutsig2_images.part000000000004/AES.3_854_30000_0.46357_0.050467_0.1481.png
                gene_name: AES
               theta_stop: 0.098 
                    nperm: 30000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.050 
      ci_cons_bounds_left: 0.048 
     ci_cons_bounds_right: 0.053 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 68 percent done.
AFG3L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.159149e-02	ci left: 5.965440e-01	ci right 6.157941e-01	k: 6062	n:10000
Cons ci ratio: 4.630365e-02	ci left: 4.077101e-01	ci right 4.271381e-01	k: 4174	n:10000
KS ci ratio: 6.117213e-02	ci left: 2.821093e-01	ci right 3.000126e-01	k: 2910	n:10000
AFG3L2   10000 perm   2 sec   (5623 perm/sec)   p_kst 2.910000e-01   p_cons 4.174000e-01   p_joint 6.062000e-01

Outputting figure to mutsig2_images.part000000000004/AFG3L2.3_2462_10000_0.291_0.4174_0.6062.png
                gene_name: AFG3L2
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 70 percent done.
ADCK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.817290e-02	ci left: 5.033509e-01	ci right 5.230414e-01	k: 5132	n:10000
Cons ci ratio: 7.934133e-02	ci left: 1.883574e-01	ci right 2.040200e-01	k: 1961	n:10000
KS ci ratio: 2.043026e-02	ci left: 7.782343e-01	ci right 7.943986e-01	k: 7864	n:10000
ADCK4   10000 perm   2 sec   (6459 perm/sec)   p_kst 7.864000e-01   p_cons 1.961000e-01   p_joint 5.132000e-01

Outputting figure to mutsig2_images.part000000000004/ADCK4.2_1691_10000_0.7864_0.1961_0.5132.png
                gene_name: ADCK4
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 72 percent done.
ADCY6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.360775e-02	ci left: 5.665439e-01	ci right 5.860116e-01	k: 5763	n:10000
Cons ci ratio: 7.728861e-02	ci left: 1.966317e-01	ci right 2.125408e-01	k: 2045	n:10000
KS ci ratio: 3.716947e-02	ci left: 5.166574e-01	ci right 5.363271e-01	k: 5265	n:10000
ADCY6   10000 perm   2 sec   (5501 perm/sec)   p_kst 5.265000e-01   p_cons 2.045000e-01   p_joint 5.763000e-01

Outputting figure to mutsig2_images.part000000000004/ADCY6.2_3591_10000_0.5265_0.2045_0.5763.png
                gene_name: ADCY6
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 74 percent done.
ADCYAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.929540e-02	ci left: 6.321112e-01	ci right 6.510063e-01	k: 6416	n:10000
KS ci ratio: 1.034997e-02	ci left: 9.298868e-01	ci right 9.396581e-01	k: 9349	n:10000
ADCYAP1   10000 perm   1 sec   (6762 perm/sec)   p_kst 9.349000e-01   p_cons 6.416000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000004/ADCYAP1.2_547_10000_0.9349_0.6416_1.png
                gene_name: ADCYAP1
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
ADD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.313950e-03	ci left: 9.715363e-01	ci right 9.777830e-01	k: 9748	n:10000
Cons ci ratio: 2.584439e-02	ci left: 6.878865e-01	ci right 7.059987e-01	k: 6970	n:10000
KS ci ratio: 4.101545e-02	ci left: 4.674681e-01	ci right 4.871451e-01	k: 4773	n:10000
ADD2   10000 perm   2 sec   (5916 perm/sec)   p_kst 4.773000e-01   p_cons 6.970000e-01   p_joint 9.748000e-01

Outputting figure to mutsig2_images.part000000000004/ADD2.2_2470_10000_0.4773_0.697_0.9748.png
                gene_name: ADD2
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 78 percent done.
ADHFE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.324445e-02	ci left: 5.718590e-01	ci right 5.912935e-01	k: 5816	n:10000
KS ci ratio: 2.773937e-02	ci left: 6.569607e-01	ci right 6.755424e-01	k: 6663	n:10000
ADHFE1   10000 perm   2 sec   (6279 perm/sec)   p_kst 6.663000e-01   p_cons 5.816000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000004/ADHFE1.2_1460_10000_0.6663_0.5816_1.png
                gene_name: ADHFE1
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
ADIPOQ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.176376e-02	ci left: 5.939338e-01	ci right 6.132058e-01	k: 6036	n:10000
KS ci ratio: 9.183970e-02	ci left: 1.469770e-01	ci right 1.612251e-01	k: 1540	n:10000
ADIPOQ   10000 perm   1 sec   (6760 perm/sec)   p_kst 1.540000e-01   p_cons 6.036000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000004/ADIPOQ.2_743_10000_0.154_0.6036_1.png
                gene_name: ADIPOQ
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
ADNP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.415632e-03	ci left: 9.706895e-01	ci right 9.770303e-01	k: 9740	n:10000
Cons ci ratio: 1.231453e-01	ci left: 8.630741e-02	ci right 9.773155e-02	k: 919	n:10000
KS ci ratio: 1.232929e-01	ci left: 8.611301e-02	ci right 9.752607e-02	k: 917	n:10000
ADNP   10000 perm   2 sec   (5554 perm/sec)   p_kst 9.170000e-02   p_cons 9.190000e-02   p_joint 9.740000e-01

Joint ci ratio: 5.355960e-02	ci left: 2.055606e-01	ci right 2.169235e-01	k: 4224	n:20000
Cons ci ratio: 8.739280e-02	ci left: 8.739173e-02	ci right 9.542751e-02	k: 1827	n:20000
KS ci ratio: 8.776318e-02	ci left: 8.670563e-02	ci right 9.471382e-02	k: 1813	n:20000
ADNP   20000 perm   4 sec   (4967 perm/sec)   p_kst 9.065000e-02   p_cons 9.135000e-02   p_joint 2.112000e-01

Outputting figure to mutsig2_images.part000000000004/ADNP.2_3321_20000_0.09065_0.09135_0.2112.png
                gene_name: ADNP
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.091 
        ci_ks_bounds_left: 0.087 
       ci_ks_bounds_right: 0.095 
                   p_cons: 0.091 
      ci_cons_bounds_left: 0.087 
     ci_cons_bounds_right: 0.095 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 84 percent done.
ADO
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.381275e-02	ci left: 8.832939e-01	ci right 8.956782e-01	k: 8896	n:10000
Cons ci ratio: 6.163475e-02	ci left: 2.790384e-01	ci right 2.968853e-01	k: 2879	n:10000
KS ci ratio: 2.355520e-02	ci left: 7.259294e-01	ci right 7.433338e-01	k: 7347	n:10000
ADO   10000 perm   1 sec   (6721 perm/sec)   p_kst 7.347000e-01   p_cons 2.879000e-01   p_joint 8.896000e-01

Outputting figure to mutsig2_images.part000000000004/ADO.2_817_10000_0.7347_0.2879_0.8896.png
                gene_name: ADO
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.90 

Current progress: 86 percent done.
ADRA1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.087503e-02	ci left: 6.074897e-01	ci right 6.266420e-01	k: 6171	n:10000
KS ci ratio: 2.084306e-02	ci left: 7.713448e-01	ci right 7.876920e-01	k: 7796	n:10000
ADRA1A   10000 perm   2 sec   (6195 perm/sec)   p_kst 7.796000e-01   p_cons 6.171000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000004/ADRA1A.2_1700_10000_0.7796_0.6171_1.png
                gene_name: ADRA1A
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
ADRA2C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.483936e-02	ci left: 8.680521e-01	ci right 8.811288e-01	k: 8747	n:10000
Cons ci ratio: 3.529587e-02	ci left: 5.423897e-01	ci right 5.619799e-01	k: 5522	n:10000
KS ci ratio: 7.124049e-02	ci left: 2.240520e-01	ci right 2.407042e-01	k: 2323	n:10000
ADRA2C   10000 perm   2 sec   (6301 perm/sec)   p_kst 2.323000e-01   p_cons 5.522000e-01   p_joint 8.747000e-01

Outputting figure to mutsig2_images.part000000000004/ADRA2C.2_1393_10000_0.2323_0.5522_0.8747.png
                gene_name: ADRA2C
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 90 percent done.
ADRBK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.075815e-01	ci left: 1.108601e-01	ci right 1.235638e-01	k: 1171	n:10000
Cons ci ratio: 1.175301e-01	ci left: 9.418721e-02	ci right 1.060469e-01	k: 1000	n:10000
KS ci ratio: 7.264646e-02	ci left: 2.172413e-01	ci right 2.337190e-01	k: 2254	n:10000
ADRBK2   10000 perm   2 sec   (5948 perm/sec)   p_kst 2.254000e-01   p_cons 1.000000e-01   p_joint 1.171000e-01

Joint ci ratio: 2.943530e-02	ci left: 4.630128e-01	ci right 4.768959e-01	k: 9399	n:20000
Cons ci ratio: 8.109712e-02	ci left: 1.003422e-01	ci right 1.088731e-01	k: 2091	n:20000
KS ci ratio: 5.111333e-02	ci left: 2.214077e-01	ci right 2.330717e-01	k: 4544	n:20000
ADRBK2   20000 perm   4 sec   (5241 perm/sec)   p_kst 2.272000e-01   p_cons 1.045500e-01   p_joint 4.699500e-01

Outputting figure to mutsig2_images.part000000000004/ADRBK2.2_2151_20000_0.2272_0.10455_0.46995.png
                gene_name: ADRBK2
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 92 percent done.
ADSSL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.450598e-02	ci left: 8.730609e-01	ci right 8.859171e-01	k: 8796	n:10000
Cons ci ratio: 1.010478e-01	ci left: 1.241518e-01	ci right 1.374641e-01	k: 1307	n:10000
KS ci ratio: 2.333780e-02	ci left: 7.295662e-01	ci right 7.468948e-01	k: 7383	n:10000
ADSSL1   10000 perm   2 sec   (6215 perm/sec)   p_kst 7.383000e-01   p_cons 1.307000e-01   p_joint 8.796000e-01

Joint ci ratio: 2.164407e-02	ci left: 6.144349e-01	ci right 6.279298e-01	k: 12424	n:20000
Cons ci ratio: 7.335194e-02	ci left: 1.203479e-01	ci right 1.295615e-01	k: 2498	n:20000
KS ci ratio: 1.671397e-02	ci left: 7.271628e-01	ci right 7.394693e-01	k: 14667	n:20000
ADSSL1   20000 perm   4 sec   (5517 perm/sec)   p_kst 7.333500e-01   p_cons 1.249000e-01   p_joint 6.212000e-01

Outputting figure to mutsig2_images.part000000000004/ADSSL1.2_1751_20000_0.73335_0.1249_0.6212.png
                gene_name: ADSSL1
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 94 percent done.
AEBP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.708334e-02	ci left: 3.996404e-01	ci right 4.190125e-01	k: 4093	n:10000
KS ci ratio: 8.683729e-03	ci left: 9.489806e-01	ci right 9.573529e-01	k: 9533	n:10000
AEBP2   10000 perm   2 sec   (6304 perm/sec)   p_kst 9.533000e-01   p_cons 4.093000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000004/AEBP2.2_1594_10000_0.9533_0.4093_1.png
                gene_name: AEBP2
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
AFAP1L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.553197e-02	ci left: 5.390841e-01	ci right 5.586874e-01	k: 5489	n:10000
Cons ci ratio: 6.265710e-02	ci left: 2.724030e-01	ci right 2.901245e-01	k: 2812	n:10000
KS ci ratio: 2.065500e-02	ci left: 7.744852e-01	ci right 7.907498e-01	k: 7827	n:10000
AFAP1L2   10000 perm   2 sec   (5884 perm/sec)   p_kst 7.827000e-01   p_cons 2.812000e-01   p_joint 5.489000e-01

Outputting figure to mutsig2_images.part000000000004/AFAP1L2.2_2533_10000_0.7827_0.2812_0.5489.png
                gene_name: AFAP1L2
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 98 percent done.
AFM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.055584e-02	ci left: 6.124120e-01	ci right 6.315169e-01	k: 6220	n:10000
Cons ci ratio: 8.186790e-02	ci left: 1.788095e-01	ci right 1.941736e-01	k: 1864	n:10000
KS ci ratio: 1.323674e-02	ci left: 8.915942e-01	ci right 9.035731e-01	k: 8977	n:10000
AFM   10000 perm   2 sec   (5945 perm/sec)   p_kst 8.977000e-01   p_cons 1.864000e-01   p_joint 6.220000e-01

Outputting figure to mutsig2_images.part000000000004/AFM.2_1856_10000_0.8977_0.1864_0.622.png
                gene_name: AFM
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000004
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 4 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1537>
Subject: Job 8003799: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1537>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000005> was used as the working directory.
Started at Sun Nov 11 15:03:15 2012
Results reported at Sun Nov 11 15:15:54 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000005.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000005.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 5  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000005.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    911.94 sec.
    Max Memory :      4802 MB
    Max Swap   :      7171 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
5
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 5
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 5: processing genes 363 - 452
Calculating significance of each gene.
Using projection method.
363	AFP	1.262084e-01
364	AFTPH	7.399859e-01
365	AGA	8.996878e-02
366	AGAP1	9.485783e-01
367	AGAP11	1
368	AGAP2	2.422098e-01
369	AGAP3	9.728543e-01
370	AGAP5	1
371	AGAP6	1
372	AGAP7	4.832367e-01
373	AGAP8	1
374	AGBL1	1.405923e-01
375	AGBL2	4.996017e-01
376	AGBL4	1.738709e-01
377	AGBL5	8.596633e-01
378	AGER	1
379	AGFG1	7.323902e-01
380	AGFG2	5.143467e-01
381	AGGF1	1
382	AGK	1
383	AGL	4.345368e-01
384	AGMAT	6.992064e-01
385	AGPAT1	1
386	AGPAT2	1
387	AGPAT3	6.817368e-01
388	AGPAT4	1
389	AGPAT5	7.983301e-01
390	AGPAT6	8.152341e-01
391	AGPAT9	6.577649e-01
392	AGPHD1	3.372484e-01
393	AGPS	8.427046e-01
394	AGR2	1
395	AGR3	1
396	AGRN	9.955770e-01
397	AGRP	1
398	AGT	1
399	AGTPBP1	4.383164e-01
400	AGTR1	1.435107e-02
401	AGTR2	1.562951e-01
402	AGTRAP	1.928740e-01
403	AGXT	2.390831e-01
404	AGXT2	4.725430e-01
405	AGXT2L1	5.721738e-01
406	AGXT2L2	1
407	AHCTF1	9.925051e-01
408	AHCY	7.460989e-01
409	AHCYL1	1
410	AHCYL2	7.350444e-01
411	AHDC1	1
412	AHI1	4.498258e-01
413	AHNAK	1.000000e+00
414	AHNAK2	1
415	AHR	9.578040e-01
416	AHRR	1
417	AHSA1	1
418	AHSA2	3.659986e-02
419	AHSG	2.507795e-01
420	AHSP	1
421	AICDA	8.068397e-02
422	AIDA	1.228563e-01
423	AIF1	3.434425e-01
424	AIF1L	1
425	AIFM1	8.627834e-01
426	AIFM2	8.563009e-01
427	AIFM3	5.354865e-01
428	AIG1	1
429	AIM1	1
430	AIM1L	8.927178e-01
431	AIM2	1.971214e-01
432	AIMP1	4.447807e-01
433	AIMP2	4.437658e-01
434	AIP	5.887432e-01
435	AIPL1	1.647014e-01
436	AIRE	5.053412e-01
437	AJAP1	1.114400e-01
438	AK1	1
439	AK2	6.362887e-01
440	AK3	1
441	AK3L1	1
442	AK5	1.238475e-02
443	AK7	5.614097e-01
444	AKAP1	9.143836e-01
445	AKAP10	1
446	AKAP11	6.972910e-01
447	AKAP12	9.660467e-01
448	AKAP13	9.830418e-01
449	AKAP14	4.278669e-01
450	AKAP2	1
451	AKAP3	5.105895e-02
452	AKAP4	6.018755e-01
Done

Running MutSig 2:
Scatter job 5: processing genes 363 - 452
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
AHNAK2
Processing conservation and coverage...
57% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.470120e-02	ci left: 3.299187e-01	ci right 3.485750e-01	k: 3392	n:10000
Cons ci ratio: 1.141993e-01	ci left: 9.934967e-02	ci right 1.114813e-01	k: 1053	n:10000
KS ci ratio: 2.547790e-02	ci left: 6.939360e-01	ci right 7.119456e-01	k: 7030	n:10000
AHNAK2   10000 perm   6 sec   (1580 perm/sec)   p_kst 7.030000e-01   p_cons 1.053000e-01   p_joint 3.392000e-01

Joint ci ratio: 3.800354e-02	ci left: 3.405996e-01	ci right 3.538449e-01	k: 6944	n:20000
Cons ci ratio: 8.096751e-02	ci left: 1.006368e-01	ci right 1.091784e-01	k: 2097	n:20000
KS ci ratio: 1.686998e-02	ci left: 7.234869e-01	ci right 7.358463e-01	k: 14594	n:20000
AHNAK2   20000 perm   17 sec   (1165 perm/sec)   p_kst 7.297000e-01   p_cons 1.048500e-01   p_joint 3.472000e-01

Outputting figure to mutsig2_images.part000000000005/AHNAK2.38_17416_20000_0.7297_0.10485_0.3472.png
                gene_name: AHNAK2
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 2 percent done.
AHNAK
Processing conservation and coverage...
56% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.827749e-02	ci left: 6.483055e-01	ci right 6.670026e-01	k: 6577	n:10000
Cons ci ratio: 2.613838e-02	ci left: 6.830481e-01	ci right 7.012398e-01	k: 6922	n:10000
KS ci ratio: 3.989796e-02	ci left: 4.812555e-01	ci right 5.009497e-01	k: 4911	n:10000
AHNAK   10000 perm   5 sec   (1827 perm/sec)   p_kst 4.911000e-01   p_cons 6.922000e-01   p_joint 6.577000e-01

Outputting figure to mutsig2_images.part000000000005/AHNAK.25_17801_10000_0.4911_0.6922_0.6577.png
                gene_name: AHNAK
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 4 percent done.
AKAP13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.805805e-02	ci left: 6.518275e-01	ci right 6.704785e-01	k: 6612	n:10000
Cons ci ratio: 1.335882e-02	ci left: 8.898512e-01	ci right 9.019170e-01	k: 8960	n:10000
KS ci ratio: 5.223299e-02	ci left: 3.507829e-01	ci right 3.696986e-01	k: 3602	n:10000
AKAP13   10000 perm   4 sec   (2784 perm/sec)   p_kst 3.602000e-01   p_cons 8.960000e-01   p_joint 6.612000e-01

Outputting figure to mutsig2_images.part000000000005/AKAP13.18_8656_10000_0.3602_0.896_0.6612.png
                gene_name: AKAP13
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 7 percent done.
AGBL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.436366e-02	ci left: 5.556165e-01	ci right 5.751454e-01	k: 5654	n:10000
Cons ci ratio: 5.326853e-02	ci left: 3.418387e-01	ci right 3.606481e-01	k: 3512	n:10000
KS ci ratio: 4.589673e-02	ci left: 4.119951e-01	ci right 4.314506e-01	k: 4217	n:10000
AGBL1   10000 perm   2 sec   (4328 perm/sec)   p_kst 4.217000e-01   p_cons 3.512000e-01   p_joint 5.654000e-01

Outputting figure to mutsig2_images.part000000000005/AGBL1.10_3293_10000_0.4217_0.3512_0.5654.png
                gene_name: AGBL1
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 9 percent done.
AGAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.743559e-02	ci left: 3.960547e-01	ci right 4.154003e-01	k: 4057	n:10000
Cons ci ratio: 2.421431e-02	ci left: 7.149223e-01	ci right 7.325471e-01	k: 7238	n:10000
KS ci ratio: 6.791337e-02	ci left: 2.413392e-01	ci right 2.584067e-01	k: 2498	n:10000
AGAP2   10000 perm   2 sec   (4279 perm/sec)   p_kst 2.498000e-01   p_cons 7.238000e-01   p_joint 4.057000e-01

Outputting figure to mutsig2_images.part000000000005/AGAP2.8_3819_10000_0.2498_0.7238_0.4057.png
                gene_name: AGAP2
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 11 percent done.
AHCTF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.019010e-01	ci left: 1.222933e-01	ci right 1.355237e-01	k: 1288	n:10000
Cons ci ratio: 4.515205e-02	ci left: 4.199692e-01	ci right 4.394718e-01	k: 4297	n:10000
KS ci ratio: 1.064023e-01	ci left: 1.131062e-01	ci right 1.259164e-01	k: 1194	n:10000
AHCTF1   10000 perm   3 sec   (3356 perm/sec)   p_kst 1.194000e-01   p_cons 4.297000e-01   p_joint 1.288000e-01

Joint ci ratio: 6.228641e-02	ci left: 1.601266e-01	ci right 1.704709e-01	k: 3305	n:20000
Cons ci ratio: 3.363928e-02	ci left: 3.975378e-01	ci right 4.111900e-01	k: 8087	n:20000
KS ci ratio: 7.596290e-02	ci left: 1.130188e-01	ci right 1.219927e-01	k: 2349	n:20000
AHCTF1   20000 perm   7 sec   (3042 perm/sec)   p_kst 1.174500e-01   p_cons 4.043500e-01   p_joint 1.652500e-01

Outputting figure to mutsig2_images.part000000000005/AHCTF1.8_6972_20000_0.11745_0.40435_0.16525.png
                gene_name: AHCTF1
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 13 percent done.
AKAP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.085058e-02	ci left: 9.236870e-01	ci right 9.338615e-01	k: 9289	n:10000
Cons ci ratio: 2.251712e-02	ci left: 7.433121e-01	ci right 7.603410e-01	k: 7519	n:10000
KS ci ratio: 2.082487e-02	ci left: 7.716487e-01	ci right 7.879880e-01	k: 7799	n:10000
AKAP3   10000 perm   2 sec   (5124 perm/sec)   p_kst 7.799000e-01   p_cons 7.519000e-01   p_joint 9.289000e-01

Outputting figure to mutsig2_images.part000000000005/AKAP3.8_2574_10000_0.7799_0.7519_0.9289.png
                gene_name: AKAP3
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 15 percent done.
AK5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.120715e-01	ci left: 1.028590e-01	ci right 1.151698e-01	k: 1089	n:10000
Cons ci ratio: 4.460369e-02	ci left: 4.259515e-01	ci right 4.454860e-01	k: 4357	n:10000
KS ci ratio: 1.326580e-01	ci left: 7.494951e-02	ci right 8.569647e-02	k: 802	n:10000
AK5   10000 perm   2 sec   (5181 perm/sec)   p_kst 8.020000e-02   p_cons 4.357000e-01   p_joint 1.089000e-01

Joint ci ratio: 7.164200e-02	ci left: 1.255159e-01	ci right 1.348919e-01	k: 2603	n:20000
Cons ci ratio: 3.116043e-02	ci left: 4.348016e-01	ci right 4.486153e-01	k: 8834	n:20000
KS ci ratio: 9.566350e-02	ci left: 7.373314e-02	ci right 8.119025e-02	k: 1548	n:20000
AK5   20000 perm   4 sec   (4553 perm/sec)   p_kst 7.740000e-02   p_cons 4.417000e-01   p_joint 1.301500e-01

Outputting figure to mutsig2_images.part000000000005/AK5.7_1745_20000_0.0774_0.4417_0.13015.png
                gene_name: AK5
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.077 
        ci_ks_bounds_left: 0.074 
       ci_ks_bounds_right: 0.081 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 17 percent done.
AKAP11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.475129e-02	ci left: 8.693806e-01	ci right 8.823995e-01	k: 8760	n:10000
Cons ci ratio: 2.719853e-02	ci left: 6.657201e-01	ci right 6.841779e-01	k: 6750	n:10000
KS ci ratio: 2.437784e-02	ci left: 7.121969e-01	ci right 7.298742e-01	k: 7211	n:10000
AKAP11   10000 perm   3 sec   (3657 perm/sec)   p_kst 7.211000e-01   p_cons 6.750000e-01   p_joint 8.760000e-01

Outputting figure to mutsig2_images.part000000000005/AKAP11.7_5750_10000_0.7211_0.675_0.876.png
                gene_name: AKAP11
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 20 percent done.
AFP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.231743e-02	ci left: 5.856032e-01	ci right 6.049412e-01	k: 5953	n:10000
Cons ci ratio: 7.503512e-02	ci left: 2.062917e-01	ci right 2.224751e-01	k: 2143	n:10000
KS ci ratio: 1.398780e-02	ci left: 8.807342e-01	ci right 8.932393e-01	k: 8871	n:10000
AFP   10000 perm   2 sec   (5562 perm/sec)   p_kst 8.871000e-01   p_cons 2.143000e-01   p_joint 5.953000e-01

Outputting figure to mutsig2_images.part000000000005/AFP.6_1886_10000_0.8871_0.2143_0.5953.png
                gene_name: AFP
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.60 

Current progress: 22 percent done.
AGL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.112175e-02	ci left: 7.666861e-01	ci right 7.831535e-01	k: 7750	n:10000
Cons ci ratio: 2.656849e-02	ci left: 6.759943e-01	ci right 6.942978e-01	k: 6852	n:10000
KS ci ratio: 3.010278e-02	ci left: 6.194455e-01	ci right 6.384793e-01	k: 6290	n:10000
AGL   10000 perm   2 sec   (4030 perm/sec)   p_kst 6.290000e-01   p_cons 6.852000e-01   p_joint 7.750000e-01

Outputting figure to mutsig2_images.part000000000005/AGL.6_4800_10000_0.629_0.6852_0.775.png
                gene_name: AGL
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 24 percent done.
AIM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.880420e-02	ci left: 4.951504e-01	ci right 5.148467e-01	k: 5050	n:10000
Cons ci ratio: 3.744616e-02	ci left: 5.129549e-01	ci right 5.326318e-01	k: 5228	n:10000
KS ci ratio: 5.179401e-02	ci left: 3.546598e-01	ci right 3.736194e-01	k: 3641	n:10000
AIM1   10000 perm   2 sec   (4268 perm/sec)   p_kst 3.641000e-01   p_cons 5.228000e-01   p_joint 5.050000e-01

Outputting figure to mutsig2_images.part000000000005/AIM1.6_5252_10000_0.3641_0.5228_0.505.png
                gene_name: AIM1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.51 

Current progress: 26 percent done.
AKAP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.350978e-02	ci left: 2.131958e-01	ci right 2.295668e-01	k: 2213	n:10000
Cons ci ratio: 1.261114e-01	ci left: 8.251809e-02	ci right 9.372320e-02	k: 880	n:10000
KS ci ratio: 5.262044e-02	ci left: 3.474035e-01	ci right 3.662799e-01	k: 3568	n:10000
AKAP4   10000 perm   2 sec   (5197 perm/sec)   p_kst 3.568000e-01   p_cons 8.800000e-02   p_joint 2.213000e-01

Joint ci ratio: 6.509137e-02	ci left: 1.484806e-01	ci right 1.585204e-01	k: 3069	n:20000
Cons ci ratio: 8.996207e-02	ci left: 8.278644e-02	ci right 9.063420e-02	k: 1733	n:20000
KS ci ratio: 3.806229e-02	ci left: 3.399028e-01	ci right 3.531418e-01	k: 6930	n:20000
AKAP4   20000 perm   4 sec   (4592 perm/sec)   p_kst 3.465000e-01   p_cons 8.665000e-02   p_joint 1.534500e-01

Outputting figure to mutsig2_images.part000000000005/AKAP4.6_2589_20000_0.3465_0.08665_0.15345.png
                gene_name: AKAP4
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.087 
      ci_cons_bounds_left: 0.083 
     ci_cons_bounds_right: 0.091 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 28 percent done.
AGTPBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.376352e-02	ci left: 8.840108e-01	ci right 8.963609e-01	k: 8903	n:10000
Cons ci ratio: 4.418895e-02	ci left: 4.305389e-01	ci right 4.500959e-01	k: 4403	n:10000
KS ci ratio: 1.557477e-02	ci left: 8.568193e-01	ci right 8.703681e-01	k: 8637	n:10000
AGTPBP1   10000 perm   2 sec   (4876 perm/sec)   p_kst 8.637000e-01   p_cons 4.403000e-01   p_joint 8.903000e-01

Outputting figure to mutsig2_images.part000000000005/AGTPBP1.5_3661_10000_0.8637_0.4403_0.8903.png
                gene_name: AGTPBP1
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.90 

Current progress: 30 percent done.
AGTR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.306490e-02	ci left: 2.152677e-01	ci right 2.316936e-01	k: 2234	n:10000
Cons ci ratio: 3.418922e-02	ci left: 5.581224e-01	ci right 5.776381e-01	k: 5679	n:10000
KS ci ratio: 1.690887e-01	ci left: 4.667345e-02	ci right 5.539046e-02	k: 509	n:10000
AGTR1   10000 perm   2 sec   (6070 perm/sec)   p_kst 5.090000e-02   p_cons 5.679000e-01   p_joint 2.234000e-01

Joint ci ratio: 5.958532e-02	ci left: 1.725726e-01	ci right 1.832212e-01	k: 3557	n:20000
Cons ci ratio: 2.438444e-02	ci left: 5.567931e-01	ci right 5.705884e-01	k: 11274	n:20000
KS ci ratio: 1.183488e-01	ci left: 4.891463e-02	ci right 5.511643e-02	k: 1039	n:20000
AGTR1   20000 perm   4 sec   (5356 perm/sec)   p_kst 5.195000e-02   p_cons 5.637000e-01   p_joint 1.778500e-01

Joint ci ratio: 5.750954e-02	ci left: 1.302300e-01	ci right 1.379744e-01	k: 4022	n:30000
Cons ci ratio: 1.993182e-02	ci left: 5.575315e-01	ci right 5.687896e-01	k: 16895	n:30000
KS ci ratio: 9.630694e-02	ci left: 4.980752e-02	ci right 5.487962e-02	k: 1569	n:30000
AGTR1   30000 perm   6 sec   (5082 perm/sec)   p_kst 5.230000e-02   p_cons 5.631667e-01   p_joint 1.340667e-01

Outputting figure to mutsig2_images.part000000000005/AGTR1.5_1084_30000_0.0523_0.56317_0.13407.png
                gene_name: AGTR1
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.052 
        ci_ks_bounds_left: 0.050 
       ci_ks_bounds_right: 0.055 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 33 percent done.
AHI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.466463e-02	ci left: 3.302166e-01	ci right 3.488769e-01	k: 3395	n:10000
Cons ci ratio: 1.045236e-01	ci left: 1.168187e-01	ci right 1.298017e-01	k: 1232	n:10000
KS ci ratio: 1.950272e-02	ci left: 7.936464e-01	ci right 8.093775e-01	k: 8016	n:10000
AHI1   10000 perm   2 sec   (4486 perm/sec)   p_kst 8.016000e-01   p_cons 1.232000e-01   p_joint 3.395000e-01

Joint ci ratio: 3.300859e-02	ci left: 4.066630e-01	ci right 4.203622e-01	k: 8270	n:20000
Cons ci ratio: 7.432380e-02	ci left: 1.175435e-01	ci right 1.266667e-01	k: 2441	n:20000
KS ci ratio: 1.445267e-02	ci left: 7.805020e-01	ci right 7.919146e-01	k: 15725	n:20000
AHI1   20000 perm   5 sec   (4063 perm/sec)   p_kst 7.862500e-01   p_cons 1.220500e-01   p_joint 4.135000e-01

Outputting figure to mutsig2_images.part000000000005/AHI1.5_3752_20000_0.78625_0.12205_0.4135.png
                gene_name: AHI1
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.42 

Current progress: 35 percent done.
AFTPH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.180414e-02	ci left: 2.212878e-01	ci right 2.378700e-01	k: 2295	n:10000
Cons ci ratio: 3.888187e-02	ci left: 4.941505e-01	ci right 5.138471e-01	k: 5040	n:10000
KS ci ratio: 1.159281e-01	ci left: 9.662172e-02	ci right 1.086109e-01	k: 1025	n:10000
AFTPH   10000 perm   2 sec   (5422 perm/sec)   p_kst 1.025000e-01   p_cons 5.040000e-01   p_joint 2.295000e-01

Joint ci ratio: 6.269581e-02	ci left: 1.583495e-01	ci right 1.686486e-01	k: 3269	n:20000
Cons ci ratio: 2.830757e-02	ci left: 4.824990e-01	ci right 4.964041e-01	k: 9789	n:20000
KS ci ratio: 8.582577e-02	ci left: 9.038200e-02	ci right 9.853634e-02	k: 1888	n:20000
AFTPH   20000 perm   4 sec   (4788 perm/sec)   p_kst 9.440000e-02   p_cons 4.894500e-01   p_joint 1.634500e-01

Outputting figure to mutsig2_images.part000000000005/AFTPH.4_2850_20000_0.0944_0.48945_0.16345.png
                gene_name: AFTPH
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.094 
        ci_ks_bounds_left: 0.090 
       ci_ks_bounds_right: 0.099 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 37 percent done.
AGBL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.092200e-02	ci left: 3.625152e-01	ci right 3.815594e-01	k: 3720	n:10000
Cons ci ratio: 6.689629e-02	ci left: 2.469740e-01	ci right 2.641687e-01	k: 2555	n:10000
KS ci ratio: 5.651887e-02	ci left: 3.155244e-01	ci right 3.339778e-01	k: 3247	n:10000
AGBL2   10000 perm   2 sec   (5375 perm/sec)   p_kst 3.247000e-01   p_cons 2.555000e-01   p_joint 3.720000e-01

Outputting figure to mutsig2_images.part000000000005/AGBL2.4_2781_10000_0.3247_0.2555_0.372.png
                gene_name: AGBL2
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 39 percent done.
AKAP12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.400106e-02	ci left: 3.356792e-01	ci right 3.544111e-01	k: 3450	n:10000
Cons ci ratio: 6.167987e-02	ci left: 2.787412e-01	ci right 2.965826e-01	k: 2876	n:10000
KS ci ratio: 6.651176e-02	ci left: 2.491493e-01	ci right 2.663920e-01	k: 2577	n:10000
AKAP12   10000 perm   2 sec   (4105 perm/sec)   p_kst 2.577000e-01   p_cons 2.876000e-01   p_joint 3.450000e-01

Outputting figure to mutsig2_images.part000000000005/AKAP12.4_5390_10000_0.2577_0.2876_0.345.png
                gene_name: AKAP12
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 41 percent done.
AGA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.529587e-02	ci left: 5.423897e-01	ci right 5.619799e-01	k: 5522	n:10000
Cons ci ratio: 1.298648e-01	ci left: 7.805288e-02	ci right 8.899118e-02	k: 834	n:10000
KS ci ratio: 4.497748e-02	ci left: 4.218634e-01	ci right 4.413764e-01	k: 4316	n:10000
AGA   10000 perm   2 sec   (6238 perm/sec)   p_kst 4.316000e-01   p_cons 8.340000e-02   p_joint 5.522000e-01

Joint ci ratio: 4.785646e-02	ci left: 2.451512e-01	ci right 2.572212e-01	k: 5023	n:20000
Cons ci ratio: 9.210118e-02	ci left: 7.921235e-02	ci right 8.690937e-02	k: 1660	n:20000
KS ci ratio: 3.190738e-02	ci left: 4.231742e-01	ci right 4.369461e-01	k: 8601	n:20000
AGA   20000 perm   4 sec   (5448 perm/sec)   p_kst 4.300500e-01   p_cons 8.300000e-02   p_joint 2.511500e-01

Outputting figure to mutsig2_images.part000000000005/AGA.3_1077_20000_0.43005_0.083_0.25115.png
                gene_name: AGA
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.083 
      ci_cons_bounds_left: 0.079 
     ci_cons_bounds_right: 0.087 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 43 percent done.
AGAP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.184518e-03	ci left: 9.801637e-01	ci right 9.853496e-01	k: 9829	n:10000
Cons ci ratio: 2.383922e-02	ci left: 7.211824e-01	ci right 7.386835e-01	k: 7300	n:10000
KS ci ratio: 6.428240e-03	ci left: 9.705838e-01	ci right 9.769362e-01	k: 9739	n:10000
AGAP3   10000 perm   2 sec   (5792 perm/sec)   p_kst 9.739000e-01   p_cons 7.300000e-01   p_joint 9.829000e-01

Outputting figure to mutsig2_images.part000000000005/AGAP3.3_2875_10000_0.9739_0.73_0.9829.png
                gene_name: AGAP3
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 46 percent done.
AGRN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.383106e-02	ci left: 2.117161e-01	ci right 2.280474e-01	k: 2198	n:10000
Cons ci ratio: 8.511018e-02	ci left: 1.674999e-01	ci right 1.824899e-01	k: 1749	n:10000
KS ci ratio: 7.555118e-02	ci left: 2.040239e-01	ci right 2.201442e-01	k: 2120	n:10000
AGRN   10000 perm   2 sec   (4039 perm/sec)   p_kst 2.120000e-01   p_cons 1.749000e-01   p_joint 2.198000e-01

Outputting figure to mutsig2_images.part000000000005/AGRN.3_6282_10000_0.212_0.1749_0.2198.png
                gene_name: AGRN
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 48 percent done.
AGTR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.829303e-01	ci left: 3.987233e-02	ci right 4.799604e-02	k: 438	n:10000
Cons ci ratio: 1.524659e-01	ci left: 5.725512e-02	ci right 6.680198e-02	k: 619	n:10000
KS ci ratio: 8.869635e-02	ci left: 1.561040e-01	ci right 1.706926e-01	k: 1633	n:10000
AGTR2   10000 perm   1 sec   (7034 perm/sec)   p_kst 1.633000e-01   p_cons 6.190000e-02   p_joint 4.380000e-02

Joint ci ratio: 1.076732e-01	ci left: 5.879414e-02	ci right 6.553384e-02	k: 1242	n:20000
Cons ci ratio: 1.084192e-01	ci left: 5.801445e-02	ci right 6.471377e-02	k: 1226	n:20000
KS ci ratio: 6.336889e-02	ci left: 1.554867e-01	ci right 1.657121e-01	k: 3211	n:20000
AGTR2   20000 perm   3 sec   (6091 perm/sec)   p_kst 1.605500e-01   p_cons 6.130000e-02   p_joint 6.210000e-02

Joint ci ratio: 8.581225e-02	ci left: 6.223591e-02	ci right 6.784869e-02	k: 1950	n:30000
Cons ci ratio: 8.981837e-02	ci left: 5.701237e-02	ci right 6.240662e-02	k: 1790	n:30000
KS ci ratio: 5.141691e-02	ci left: 1.581107e-01	ci right 1.664881e-01	k: 4868	n:30000
AGTR2   30000 perm   5 sec   (5722 perm/sec)   p_kst 1.622667e-01   p_cons 5.966667e-02   p_joint 6.500000e-02

Outputting figure to mutsig2_images.part000000000005/AGTR2.3_1096_30000_0.16227_0.059667_0.065.png
                gene_name: AGTR2
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.060 
      ci_cons_bounds_left: 0.057 
     ci_cons_bounds_right: 0.062 
                  p_joint: 0.065 
     ci_joint_bounds_left: 0.062 
    ci_joint_bounds_right: 0.068 

Current progress: 50 percent done.
AHDC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.342233e-02	ci left: 5.692514e-01	ci right 5.887025e-01	k: 5790	n:10000
Cons ci ratio: 5.689464e-02	ci left: 3.126467e-01	ci right 3.310572e-01	k: 3218	n:10000
KS ci ratio: 1.650805e-02	ci left: 8.422384e-01	ci right 8.563575e-01	k: 8494	n:10000
AHDC1   10000 perm   2 sec   (4466 perm/sec)   p_kst 8.494000e-01   p_cons 3.218000e-01   p_joint 5.790000e-01

Outputting figure to mutsig2_images.part000000000005/AHDC1.3_4816_10000_0.8494_0.3218_0.579.png
                gene_name: AHDC1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 52 percent done.
AHSG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.786312e-02	ci left: 1.942671e-01	ci right 2.101068e-01	k: 2021	n:10000
Cons ci ratio: 4.132077e-02	ci left: 4.637727e-01	ci right 4.834426e-01	k: 4736	n:10000
KS ci ratio: 1.102080e-01	ci left: 1.060777e-01	ci right 1.185492e-01	k: 1122	n:10000
AHSG   10000 perm   1 sec   (7027 perm/sec)   p_kst 1.122000e-01   p_cons 4.736000e-01   p_joint 2.021000e-01

Joint ci ratio: 5.036102e-02	ci left: 2.266102e-01	ci right 2.383676e-01	k: 4649	n:20000
Cons ci ratio: 2.872132e-02	ci left: 4.752529e-01	ci right 4.891523e-01	k: 9644	n:20000
KS ci ratio: 7.733037e-02	ci left: 1.094302e-01	ci right 1.182824e-01	k: 2276	n:20000
AHSG   20000 perm   3 sec   (6104 perm/sec)   p_kst 1.138000e-01   p_cons 4.822000e-01   p_joint 2.324500e-01

Outputting figure to mutsig2_images.part000000000005/AHSG.3_1132_20000_0.1138_0.4822_0.23245.png
                gene_name: AHSG
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 54 percent done.
AIDA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.793559e-02	ci left: 1.939715e-01	ci right 2.098025e-01	k: 2018	n:10000
Cons ci ratio: 3.356648e-02	ci left: 5.671455e-01	ci right 5.866096e-01	k: 5769	n:10000
KS ci ratio: 1.315040e-01	ci left: 7.620996e-02	ci right 8.703524e-02	k: 815	n:10000
AIDA   10000 perm   2 sec   (6334 perm/sec)   p_kst 8.150000e-02   p_cons 5.769000e-01   p_joint 2.018000e-01

Joint ci ratio: 8.045436e-02	ci left: 1.018153e-01	ci right 1.103996e-01	k: 2121	n:20000
Cons ci ratio: 2.358127e-02	ci left: 5.732237e-01	ci right 5.869530e-01	k: 11602	n:20000
KS ci ratio: 9.516495e-02	ci left: 7.446665e-02	ci right 8.195653e-02	k: 1563	n:20000
AIDA   20000 perm   4 sec   (5567 perm/sec)   p_kst 7.815000e-02   p_cons 5.801000e-01   p_joint 1.060500e-01

Outputting figure to mutsig2_images.part000000000005/AIDA.3_961_20000_0.07815_0.5801_0.10605.png
                gene_name: AIDA
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.078 
        ci_ks_bounds_left: 0.074 
       ci_ks_bounds_right: 0.082 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 57 percent done.
AIPL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.500293e-02	ci left: 7.018032e-01	ci right 7.196739e-01	k: 7108	n:10000
KS ci ratio: 9.094428e-03	ci left: 9.445056e-01	ci right 9.532306e-01	k: 9490	n:10000
AIPL1   10000 perm   2 sec   (6095 perm/sec)   p_kst 9.490000e-01   p_cons 7.108000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000005/AIPL1.3_1179_10000_0.949_0.7108_1.png
                gene_name: AIPL1
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 59 percent done.
AJAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.182775e-03	ci left: 9.639407e-01	ci right 9.709836e-01	k: 9676	n:10000
Cons ci ratio: 4.365513e-02	ci left: 4.365237e-01	ci right 4.561076e-01	k: 4463	n:10000
KS ci ratio: 3.931186e-02	ci left: 4.886519e-01	ci right 5.083490e-01	k: 4985	n:10000
AJAP1   10000 perm   2 sec   (6323 perm/sec)   p_kst 4.985000e-01   p_cons 4.463000e-01   p_joint 9.676000e-01

Outputting figure to mutsig2_images.part000000000005/AJAP1.3_1256_10000_0.4985_0.4463_0.9676.png
                gene_name: AJAP1
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 61 percent done.
AK7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.421586e-02	ci left: 4.302397e-01	ci right 4.497953e-01	k: 4400	n:10000
Cons ci ratio: 9.191022e-02	ci left: 1.467809e-01	ci right 1.610214e-01	k: 1538	n:10000
KS ci ratio: 2.594843e-02	ci left: 6.861727e-01	ci right 7.043134e-01	k: 6953	n:10000
AK7   10000 perm   2 sec   (5786 perm/sec)   p_kst 6.953000e-01   p_cons 1.538000e-01   p_joint 4.400000e-01

Outputting figure to mutsig2_images.part000000000005/AK7.3_2244_10000_0.6953_0.1538_0.44.png
                gene_name: AK7
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 63 percent done.
AGAP7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.952147e-02	ci left: 1.275764e-01	ci right 1.410375e-01	k: 1342	n:10000
Cons ci ratio: 2.754004e-02	ci left: 6.601821e-01	ci right 6.787191e-01	k: 6695	n:10000
KS ci ratio: 1.617042e-01	ci left: 5.099641e-02	ci right 6.006470e-02	k: 554	n:10000
AGAP7   10000 perm   2 sec   (6090 perm/sec)   p_kst 5.540000e-02   p_cons 6.695000e-01   p_joint 1.342000e-01

Joint ci ratio: 5.638971e-02	ci left: 1.890835e-01	ci right 2.001054e-01	k: 3891	n:20000
Cons ci ratio: 1.934919e-02	ci left: 6.657955e-01	ci right 6.788544e-01	k: 13447	n:20000
KS ci ratio: 1.171652e-01	ci left: 4.988666e-02	ci right 5.614409e-02	k: 1059	n:20000
AGAP7   20000 perm   4 sec   (5331 perm/sec)   p_kst 5.295000e-02   p_cons 6.723500e-01   p_joint 1.945500e-01

Joint ci ratio: 4.584243e-02	ci left: 1.914548e-01	ci right 2.004708e-01	k: 5878	n:30000
Cons ci ratio: 1.588067e-02	ci left: 6.647131e-01	ci right 6.753872e-01	k: 20102	n:30000
KS ci ratio: 9.673027e-02	ci left: 4.938411e-02	ci right 5.443644e-02	k: 1556	n:30000
AGAP7   30000 perm   6 sec   (5045 perm/sec)   p_kst 5.186667e-02   p_cons 6.700667e-01   p_joint 1.959333e-01

Outputting figure to mutsig2_images.part000000000005/AGAP7.2_2020_30000_0.051867_0.67007_0.19593.png
                gene_name: AGAP7
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.052 
        ci_ks_bounds_left: 0.049 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 65 percent done.
AGBL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.312042e-02	ci left: 4.426097e-01	ci right 4.622180e-01	k: 4524	n:10000
KS ci ratio: 5.966541e-02	ci left: 2.924153e-01	ci right 3.105005e-01	k: 3014	n:10000
AGBL4   10000 perm   2 sec   (6314 perm/sec)   p_kst 3.014000e-01   p_cons 4.524000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000005/AGBL4.2_1568_10000_0.3014_0.4524_1.png
                gene_name: AGBL4
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
AGBL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.616898e-03	ci left: 9.598466e-01	ci right 9.672802e-01	k: 9637	n:10000
Cons ci ratio: 4.439572e-02	ci left: 4.282451e-01	ci right 4.477911e-01	k: 4380	n:10000
KS ci ratio: 5.060749e-02	ci left: 3.653994e-01	ci right 3.844735e-01	k: 3749	n:10000
AGBL5   10000 perm   2 sec   (5949 perm/sec)   p_kst 3.749000e-01   p_cons 4.380000e-01   p_joint 9.637000e-01

Outputting figure to mutsig2_images.part000000000005/AGBL5.2_2782_10000_0.3749_0.438_0.9637.png
                gene_name: AGBL5
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 70 percent done.
AGFG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.187538e-02	ci left: 9.103913e-01	ci right 9.213650e-01	k: 9160	n:10000
Cons ci ratio: 2.770196e-02	ci left: 6.575647e-01	ci right 6.761380e-01	k: 6669	n:10000
KS ci ratio: 2.815202e-02	ci left: 6.503180e-01	ci right 6.689889e-01	k: 6597	n:10000
AGFG2   10000 perm   2 sec   (6456 perm/sec)   p_kst 6.597000e-01   p_cons 6.669000e-01   p_joint 9.160000e-01

Outputting figure to mutsig2_images.part000000000005/AGFG2.2_1494_10000_0.6597_0.6669_0.916.png
                gene_name: AGFG2
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 72 percent done.
AGPHD1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 74 percent done.
AGTRAP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.497797e-01	ci left: 5.928045e-02	ci right 6.897537e-02	k: 640	n:10000
Cons ci ratio: 6.035677e-01	ci left: 2.943789e-03	ci right 5.558045e-03	k: 41	n:10000
KS ci ratio: 2.415377e-02	ci left: 7.159319e-01	ci right 7.335370e-01	k: 7248	n:10000
AGTRAP   10000 perm   1 sec   (7540 perm/sec)   p_kst 7.248000e-01   p_cons 4.100000e-03   p_joint 6.400000e-02

Joint ci ratio: 1.514734e-01	ci left: 2.994113e-02	ci right 3.489604e-02	k: 647	n:20000
Cons ci ratio: 4.517819e-01	ci left: 2.906379e-03	ci right 4.642815e-03	k: 74	n:20000
KS ci ratio: 1.711815e-02	ci left: 7.176468e-01	ci right 7.300880e-01	k: 14478	n:20000
AGTRAP   20000 perm   3 sec   (6505 perm/sec)   p_kst 7.239000e-01   p_cons 3.700000e-03   p_joint 3.235000e-02

Joint ci ratio: 1.313464e-01	ci left: 2.693656e-02	ci right 3.075541e-02	k: 864	n:30000
Cons ci ratio: 3.730653e-01	ci left: 2.984266e-03	ci right 4.381238e-03	k: 109	n:30000
KS ci ratio: 1.405627e-02	ci left: 7.165237e-01	ci right 7.267001e-01	k: 21649	n:30000
AGTRAP   30000 perm   5 sec   (6089 perm/sec)   p_kst 7.216333e-01   p_cons 3.633333e-03   p_joint 2.880000e-02

Joint ci ratio: 6.799056e-02	ci left: 7.411042e-02	ci right 7.935123e-02	k: 3068	n:40000
Cons ci ratio: 3.260741e-01	ci left: 3.013892e-03	ci right 4.209958e-03	k: 143	n:40000
KS ci ratio: 1.216126e-02	ci left: 7.176062e-01	ci right 7.264116e-01	k: 28881	n:40000
AGTRAP   40000 perm   7 sec   (5823 perm/sec)   p_kst 7.220250e-01   p_cons 3.575000e-03   p_joint 7.670000e-02

Joint ci ratio: 7.451938e-02	ci left: 5.048250e-02	ci right 5.440967e-02	k: 2621	n:50000
Cons ci ratio: 2.908406e-01	ci left: 3.094032e-03	ci right 4.164873e-03	k: 180	n:50000
KS ci ratio: 1.088565e-02	ci left: 7.177691e-01	ci right 7.256452e-01	k: 36086	n:50000
AGTRAP   50000 perm   9 sec   (5630 perm/sec)   p_kst 7.217200e-01   p_cons 3.600000e-03   p_joint 5.242000e-02

Joint ci ratio: 6.771382e-02	ci left: 5.110592e-02	ci right 5.470415e-02	k: 3173	n:60000
Cons ci ratio: 2.574180e-01	ci left: 3.354675e-03	ci right 4.360920e-03	k: 230	n:60000
KS ci ratio: 9.929041e-03	ci left: 7.184464e-01	ci right 7.256321e-01	k: 43323	n:60000
AGTRAP   60000 perm   11 sec   (5472 perm/sec)   p_kst 7.220500e-01   p_cons 3.833333e-03   p_joint 5.288333e-02

Joint ci ratio: 6.388370e-02	ci left: 4.940990e-02	ci right 5.268459e-02	k: 3572	n:70000
Cons ci ratio: 2.359184e-01	ci left: 3.465243e-03	ci right 4.405185e-03	k: 274	n:70000
KS ci ratio: 9.187443e-03	ci left: 7.189372e-01	ci right 7.255872e-01	k: 50559	n:70000
AGTRAP   70000 perm   13 sec   (5311 perm/sec)   p_kst 7.222714e-01   p_cons 3.914286e-03   p_joint 5.102857e-02

Joint ci ratio: 6.142801e-02	ci left: 4.694764e-02	ci right 4.993522e-02	k: 3874	n:80000
Cons ci ratio: 2.218489e-01	ci left: 3.456303e-03	ci right 4.330280e-03	k: 310	n:80000
KS ci ratio: 8.591318e-03	ci left: 7.192826e-01	ci right 7.255013e-01	k: 57792	n:80000
AGTRAP   80000 perm   15 sec   (5180 perm/sec)   p_kst 7.224000e-01   p_cons 3.875000e-03   p_joint 4.842500e-02

Joint ci ratio: 5.794548e-02	ci left: 4.698501e-02	ci right 4.979975e-02	k: 4354	n:90000
Cons ci ratio: 2.115650e-01	ci left: 3.398016e-03	ci right 4.212258e-03	k: 341	n:90000
KS ci ratio: 8.101323e-03	ci left: 7.193948e-01	ci right 7.252576e-01	k: 65010	n:90000
AGTRAP   90000 perm   18 sec   (5059 perm/sec)   p_kst 7.223333e-01   p_cons 3.788889e-03   p_joint 4.837778e-02

Joint ci ratio: 6.393469e-02	ci left: 3.507046e-02	ci right 3.739654e-02	k: 3622	n:100000
Cons ci ratio: 2.009739e-01	ci left: 3.409114e-03	ci right 4.180107e-03	k: 378	n:100000
KS ci ratio: 7.689106e-03	ci left: 7.193623e-01	ci right 7.249248e-01	k: 72215	n:100000
AGTRAP   100000 perm   20 sec   (4944 perm/sec)   p_kst 7.221500e-01   p_cons 3.780000e-03   p_joint 3.622000e-02

Joint ci ratio: 6.417219e-02	ci left: 3.175523e-02	ci right 3.386950e-02	k: 3608	n:110000
Cons ci ratio: 1.937078e-01	ci left: 3.349798e-03	ci right 4.076755e-03	k: 407	n:110000
KS ci ratio: 7.339167e-03	ci left: 7.190594e-01	ci right 7.243652e-01	k: 79389	n:110000
AGTRAP   110000 perm   23 sec   (4839 perm/sec)   p_kst 7.217182e-01   p_cons 3.700000e-03   p_joint 3.280000e-02

Joint ci ratio: 5.850113e-02	ci left: 3.501055e-02	ci right 3.712861e-02	k: 4327	n:120000
Cons ci ratio: 1.848558e-01	ci left: 3.388198e-03	ci right 4.086122e-03	k: 447	n:120000
KS ci ratio: 7.022373e-03	ci left: 7.194222e-01	ci right 7.245004e-01	k: 86636	n:120000
AGTRAP   120000 perm   25 sec   (4736 perm/sec)   p_kst 7.219667e-01   p_cons 3.725000e-03   p_joint 3.605833e-02

Joint ci ratio: 5.599375e-02	ci left: 3.531255e-02	ci right 3.735435e-02	k: 4722	n:130000
Cons ci ratio: 1.753220e-01	ci left: 3.494871e-03	ci right 4.173710e-03	k: 497	n:130000
KS ci ratio: 6.747741e-03	ci left: 7.194710e-01	ci right 7.243499e-01	k: 93849	n:130000
AGTRAP   130000 perm   28 sec   (4640 perm/sec)   p_kst 7.219154e-01   p_cons 3.823077e-03   p_joint 3.632308e-02

Joint ci ratio: 5.693565e-02	ci left: 3.181676e-02	ci right 3.368837e-02	k: 4584	n:140000
Cons ci ratio: 1.688352e-01	ci left: 3.511817e-03	ci right 4.166140e-03	k: 536	n:140000
KS ci ratio: 6.499182e-03	ci left: 7.197525e-01	ci right 7.244526e-01	k: 101095	n:140000
AGTRAP   140000 perm   31 sec   (4549 perm/sec)   p_kst 7.221071e-01   p_cons 3.828571e-03   p_joint 3.274286e-02

Joint ci ratio: 5.228996e-02	ci left: 3.516822e-02	ci right 3.706309e-02	k: 5416	n:150000
Cons ci ratio: 1.641673e-01	ci left: 3.475746e-03	ci right 4.103675e-03	k: 567	n:150000
KS ci ratio: 6.271723e-03	ci left: 7.202866e-01	ci right 7.248248e-01	k: 108384	n:150000
AGTRAP   150000 perm   34 sec   (4464 perm/sec)   p_kst 7.225600e-01   p_cons 3.780000e-03   p_joint 3.610667e-02

Joint ci ratio: 5.053947e-02	ci left: 3.532091e-02	ci right 3.715844e-02	k: 5797	n:160000
Cons ci ratio: 1.573802e-01	ci left: 3.558454e-03	ci right 4.172239e-03	k: 617	n:160000
KS ci ratio: 6.071113e-03	ci left: 7.204555e-01	ci right 7.248490e-01	k: 115625	n:160000
AGTRAP   160000 perm   37 sec   (4380 perm/sec)   p_kst 7.226562e-01   p_cons 3.856250e-03   p_joint 3.623125e-02

Joint ci ratio: 4.892502e-02	ci left: 3.549726e-02	ci right 3.728330e-02	k: 6185	n:170000
Cons ci ratio: 1.531061e-01	ci left: 3.547017e-03	ci right 4.140689e-03	k: 652	n:170000
KS ci ratio: 5.898019e-03	ci left: 7.199638e-01	ci right 7.242286e-01	k: 122757	n:170000
AGTRAP   170000 perm   40 sec   (4301 perm/sec)   p_kst 7.221000e-01   p_cons 3.835294e-03   p_joint 3.638235e-02

Joint ci ratio: 4.756498e-02	ci left: 3.549557e-02	ci right 3.723051e-02	k: 6544	n:180000
Cons ci ratio: 1.486212e-01	ci left: 3.563797e-03	ci right 4.141252e-03	k: 692	n:180000
KS ci ratio: 5.733988e-03	ci left: 7.198739e-01	ci right 7.240190e-01	k: 129951	n:180000
AGTRAP   180000 perm   43 sec   (4222 perm/sec)   p_kst 7.219500e-01   p_cons 3.844444e-03   p_joint 3.635556e-02

Joint ci ratio: 4.829655e-02	ci left: 3.270061e-02	ci right 3.432419e-02	k: 6366	n:190000
Cons ci ratio: 1.445086e-01	ci left: 3.579037e-03	ci right 4.141530e-03	k: 732	n:190000
KS ci ratio: 5.584749e-03	ci left: 7.196630e-01	ci right 7.236986e-01	k: 137120	n:190000
AGTRAP   190000 perm   46 sec   (4147 perm/sec)   p_kst 7.216842e-01   p_cons 3.852632e-03   p_joint 3.350526e-02

Joint ci ratio: 4.708495e-02	ci left: 3.270578e-02	ci right 3.428778e-02	k: 6698	n:200000
Cons ci ratio: 1.413635e-01	ci left: 3.559182e-03	ci right 4.105354e-03	k: 765	n:200000
KS ci ratio: 5.446176e-03	ci left: 7.195047e-01	ci right 7.234389e-01	k: 144295	n:200000
AGTRAP   200000 perm   49 sec   (4073 perm/sec)   p_kst 7.214750e-01   p_cons 3.825000e-03   p_joint 3.349000e-02

Joint ci ratio: 4.876462e-02	ci left: 2.912393e-02	ci right 3.058432e-02	k: 6268	n:210000
Cons ci ratio: 1.379825e-01	ci left: 3.564327e-03	ci right 4.097132e-03	k: 803	n:210000
KS ci ratio: 5.314719e-03	ci left: 7.195678e-01	ci right 7.234070e-01	k: 151513	n:210000
AGTRAP   210000 perm   52 sec   (4004 perm/sec)   p_kst 7.214905e-01   p_cons 3.823810e-03   p_joint 2.984762e-02

Joint ci ratio: 4.499778e-02	ci left: 3.259462e-02	ci right 3.409953e-02	k: 7335	n:220000
Cons ci ratio: 1.349941e-01	ci left: 3.560361e-03	ci right 4.080120e-03	k: 839	n:220000
KS ci ratio: 5.189232e-03	ci left: 7.198676e-01	ci right 7.236174e-01	k: 158784	n:220000
AGTRAP   220000 perm   56 sec   (3936 perm/sec)   p_kst 7.217455e-01   p_cons 3.813636e-03   p_joint 3.334091e-02

Joint ci ratio: 4.395968e-02	ci left: 3.268230e-02	ci right 3.415557e-02	k: 7685	n:230000
Cons ci ratio: 1.324958e-01	ci left: 3.540035e-03	ci right 4.046509e-03	k: 871	n:230000
KS ci ratio: 5.074645e-03	ci left: 7.199506e-01	ci right 7.236177e-01	k: 166011	n:230000
AGTRAP   230000 perm   59 sec   (3869 perm/sec)   p_kst 7.217870e-01   p_cons 3.786957e-03   p_joint 3.341304e-02

Joint ci ratio: 4.306794e-02	ci left: 3.264759e-02	ci right 3.408870e-02	k: 8007	n:240000
Cons ci ratio: 1.291313e-01	ci left: 3.577933e-03	ci right 4.075835e-03	k: 917	n:240000
KS ci ratio: 4.966812e-03	ci left: 7.200693e-01	ci right 7.236587e-01	k: 173248	n:240000
AGTRAP   240000 perm   63 sec   (3805 perm/sec)   p_kst 7.218667e-01   p_cons 3.820833e-03   p_joint 3.336250e-02

Joint ci ratio: 4.051609e-02	ci left: 3.536028e-02	ci right 3.682650e-02	k: 9022	n:250000
Cons ci ratio: 1.261422e-01	ci left: 3.605199e-03	ci right 4.094414e-03	k: 961	n:250000
KS ci ratio: 4.865865e-03	ci left: 7.201551e-01	ci right 7.236718e-01	k: 180479	n:250000
AGTRAP   250000 perm   67 sec   (3745 perm/sec)   p_kst 7.219160e-01   p_cons 3.844000e-03   p_joint 3.608800e-02

Joint ci ratio: 3.972693e-02	ci left: 3.537861e-02	ci right 3.681637e-02	k: 9384	n:260000
Cons ci ratio: 1.233515e-01	ci left: 3.630491e-03	ci right 4.111442e-03	k: 1005	n:260000
KS ci ratio: 4.771152e-03	ci left: 7.202080e-01	ci right 7.236563e-01	k: 187703	n:260000
AGTRAP   260000 perm   71 sec   (3684 perm/sec)   p_kst 7.219346e-01   p_cons 3.865385e-03   p_joint 3.609231e-02

Joint ci ratio: 3.900084e-02	ci left: 3.536283e-02	ci right 3.677308e-02	k: 9737	n:270000
Cons ci ratio: 1.212026e-01	ci left: 3.625283e-03	ci right 4.096577e-03	k: 1041	n:270000
KS ci ratio: 4.679517e-03	ci left: 7.204506e-01	ci right 7.238335e-01	k: 194979	n:270000
AGTRAP   270000 perm   74 sec   (3626 perm/sec)   p_kst 7.221444e-01   p_cons 3.855556e-03   p_joint 3.606296e-02

Joint ci ratio: 3.825028e-02	ci left: 3.546162e-02	ci right 3.684800e-02	k: 10122	n:280000
Cons ci ratio: 1.191621e-01	ci left: 3.620514e-03	ci right 4.082706e-03	k: 1077	n:280000
KS ci ratio: 4.596031e-03	ci left: 7.204080e-01	ci right 7.237302e-01	k: 202180	n:280000
AGTRAP   280000 perm   78 sec   (3570 perm/sec)   p_kst 7.220714e-01   p_cons 3.846429e-03   p_joint 3.615000e-02

Joint ci ratio: 3.753219e-02	ci left: 3.557093e-02	ci right 3.693491e-02	k: 10512	n:290000
Cons ci ratio: 1.168012e-01	ci left: 3.642918e-03	ci right 4.098120e-03	k: 1121	n:290000
KS ci ratio: 4.513910e-03	ci left: 7.206315e-01	ci right 7.238951e-01	k: 209457	n:290000
AGTRAP   290000 perm   82 sec   (3516 perm/sec)   p_kst 7.222655e-01   p_cons 3.865517e-03   p_joint 3.624828e-02

Joint ci ratio: 3.687588e-02	ci left: 3.563023e-02	ci right 3.697208e-02	k: 10889	n:300000
Cons ci ratio: 1.144275e-01	ci left: 3.673626e-03	ci right 4.122707e-03	k: 1168	n:300000
KS ci ratio: 4.437955e-03	ci left: 7.206668e-01	ci right 7.238755e-01	k: 216682	n:300000
AGTRAP   300000 perm   87 sec   (3463 perm/sec)   p_kst 7.222733e-01   p_cons 3.893333e-03   p_joint 3.629667e-02

Joint ci ratio: 3.200626e-02	ci left: 4.541566e-02	ci right 4.689606e-02	k: 14307	n:310000
Cons ci ratio: 1.123785e-01	ci left: 3.689899e-03	ci right 4.132357e-03	k: 1211	n:310000
KS ci ratio: 4.365463e-03	ci left: 7.207230e-01	ci right 7.238793e-01	k: 223914	n:310000
AGTRAP   310000 perm   91 sec   (3413 perm/sec)   p_kst 7.223032e-01   p_cons 3.906452e-03   p_joint 4.615161e-02

Joint ci ratio: 3.089258e-02	ci left: 4.716572e-02	ci right 4.864873e-02	k: 15329	n:320000
Cons ci ratio: 1.111045e-01	ci left: 3.659641e-03	ci right 4.093170e-03	k: 1239	n:320000
KS ci ratio: 4.297917e-03	ci left: 7.206351e-01	ci right 7.237421e-01	k: 231101	n:320000
AGTRAP   320000 perm   95 sec   (3362 perm/sec)   p_kst 7.221906e-01   p_cons 3.871875e-03   p_joint 4.790312e-02

Joint ci ratio: 3.171747e-02	ci left: 4.353731e-02	ci right 4.494344e-02	k: 14598	n:330000
Cons ci ratio: 1.088012e-01	ci left: 3.704937e-03	ci right 4.134150e-03	k: 1292	n:330000
KS ci ratio: 4.230504e-03	ci left: 7.208292e-01	ci right 7.238881e-01	k: 238379	n:330000
AGTRAP   330000 perm   100 sec   (3314 perm/sec)   p_kst 7.223606e-01   p_cons 3.915152e-03   p_joint 4.423636e-02

Joint ci ratio: 2.932461e-02	ci left: 4.919969e-02	ci right 5.066682e-02	k: 16976	n:340000
Cons ci ratio: 1.073991e-01	ci left: 3.693263e-03	ci right 4.115262e-03	k: 1326	n:340000
KS ci ratio: 4.167112e-03	ci left: 7.209209e-01	ci right 7.239342e-01	k: 245626	n:340000
AGTRAP   340000 perm   104 sec   (3269 perm/sec)   p_kst 7.224294e-01   p_cons 3.900000e-03   p_joint 4.992941e-02

Joint ci ratio: 3.016220e-02	ci left: 4.534236e-02	ci right 4.673374e-02	k: 16112	n:350000
Cons ci ratio: 1.063642e-01	ci left: 3.660038e-03	ci right 4.073957e-03	k: 1352	n:350000
KS ci ratio: 4.107539e-03	ci left: 7.209046e-01	ci right 7.238746e-01	k: 252837	n:350000
AGTRAP   350000 perm   109 sec   (3224 perm/sec)   p_kst 7.223914e-01   p_cons 3.862857e-03   p_joint 4.603429e-02

Joint ci ratio: 2.974915e-02	ci left: 4.532624e-02	ci right 4.669775e-02	k: 16563	n:360000
Cons ci ratio: 1.052820e-01	ci left: 3.634087e-03	ci right 4.040631e-03	k: 1380	n:360000
KS ci ratio: 4.047505e-03	ci left: 7.211816e-01	ci right 7.241092e-01	k: 260153	n:360000
AGTRAP   360000 perm   113 sec   (3180 perm/sec)   p_kst 7.226472e-01   p_cons 3.833333e-03   p_joint 4.600833e-02

Joint ci ratio: 2.936076e-02	ci left: 4.528695e-02	ci right 4.663909e-02	k: 17005	n:370000
Cons ci ratio: 1.041209e-01	ci left: 3.617456e-03	ci right 4.017404e-03	k: 1411	n:370000
KS ci ratio: 3.991667e-03	ci left: 7.212788e-01	ci right 7.241663e-01	k: 267408	n:370000
AGTRAP   370000 perm   118 sec   (3138 perm/sec)   p_kst 7.227243e-01   p_cons 3.813514e-03   p_joint 4.595946e-02

Joint ci ratio: 2.780028e-02	ci left: 4.902944e-02	ci right 5.041428e-02	k: 18893	n:380000
Cons ci ratio: 1.025701e-01	ci left: 3.632494e-03	ci right 4.027762e-03	k: 1454	n:380000
KS ci ratio: 3.937663e-03	ci left: 7.214133e-01	ci right 7.242622e-01	k: 274679	n:380000
AGTRAP   380000 perm   123 sec   (3096 perm/sec)   p_kst 7.228395e-01   p_cons 3.826316e-03   p_joint 4.971842e-02

Joint ci ratio: 2.916819e-02	ci left: 4.361559e-02	ci right 4.490914e-02	k: 17261	n:390000
Cons ci ratio: 1.013246e-01	ci left: 3.629307e-03	ci right 4.019147e-03	k: 1490	n:390000
KS ci ratio: 3.887484e-03	ci left: 7.213666e-01	ci right 7.241788e-01	k: 281882	n:390000
AGTRAP   390000 perm   128 sec   (3057 perm/sec)   p_kst 7.227744e-01   p_cons 3.820513e-03   p_joint 4.425897e-02

Joint ci ratio: 2.826880e-02	ci left: 4.521876e-02	ci right 4.651783e-02	k: 18346	n:400000
Cons ci ratio: 1.000576e-01	ci left: 3.631182e-03	ci right 4.016060e-03	k: 1528	n:400000
KS ci ratio: 3.839224e-03	ci left: 7.213173e-01	ci right 7.240944e-01	k: 289083	n:400000
AGTRAP   400000 perm   133 sec   (3017 perm/sec)   p_kst 7.227075e-01   p_cons 3.820000e-03   p_joint 4.586500e-02

Joint ci ratio: 2.846531e-02	ci left: 4.358013e-02	ci right 4.484096e-02	k: 18125	n:410000
Cons ci ratio: 9.852192e-02	ci left: 3.656785e-03	ci right 4.038084e-03	k: 1576	n:410000
KS ci ratio: 3.790017e-03	ci left: 7.215565e-01	ci right 7.242988e-01	k: 296401	n:410000
AGTRAP   410000 perm   138 sec   (2980 perm/sec)   p_kst 7.229293e-01   p_cons 3.843902e-03   p_joint 4.420732e-02

Outputting figure to mutsig2_images.part000000000005/AGTRAP.2_601_410000_0.72293_0.0038439_0.044207.png
                gene_name: AGTRAP
               theta_stop: 0.099 
                    nperm: 410000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.0038 
      ci_cons_bounds_left: 0.0037 
     ci_cons_bounds_right: 0.0040 
                  p_joint: 0.044 
     ci_joint_bounds_left: 0.044 
    ci_joint_bounds_right: 0.045 

Current progress: 76 percent done.
AGXT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.301959e-02	ci left: 5.751689e-01	ci right 5.945816e-01	k: 5849	n:10000
Cons ci ratio: 7.842255e-02	ci left: 1.920014e-01	ci right 2.077738e-01	k: 1998	n:10000
KS ci ratio: 3.882749e-02	ci left: 4.948504e-01	ci right 5.145468e-01	k: 5047	n:10000
AGXT   10000 perm   2 sec   (6582 perm/sec)   p_kst 5.047000e-01   p_cons 1.998000e-01   p_joint 5.849000e-01

Outputting figure to mutsig2_images.part000000000005/AGXT.2_1223_10000_0.5047_0.1998_0.5849.png
                gene_name: AGXT
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.59 

Current progress: 78 percent done.
AGXT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.795547e-02	ci left: 8.190349e-01	ci right 8.339744e-01	k: 8266	n:10000
Cons ci ratio: 4.687951e-02	ci left: 4.017322e-01	ci right 4.211194e-01	k: 4114	n:10000
KS ci ratio: 3.480620e-02	ci left: 5.493028e-01	ci right 5.688627e-01	k: 5591	n:10000
AGXT2   10000 perm   2 sec   (6354 perm/sec)   p_kst 5.591000e-01   p_cons 4.114000e-01   p_joint 8.266000e-01

Outputting figure to mutsig2_images.part000000000005/AGXT2.2_1601_10000_0.5591_0.4114_0.8266.png
                gene_name: AGXT2
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 80 percent done.
AGXT2L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.655537e-02	ci left: 5.249650e-01	ci right 5.446147e-01	k: 5348	n:10000
KS ci ratio: 4.909800e-02	ci left: 3.796273e-01	ci right 3.988373e-01	k: 3892	n:10000
AGXT2L1   10000 perm   2 sec   (6544 perm/sec)   p_kst 3.892000e-01   p_cons 5.348000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000005/AGXT2L1.2_1557_10000_0.3892_0.5348_1.png
                gene_name: AGXT2L1
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
AHRR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.037572e-01	ci left: 1.183824e-01	ci right 1.314370e-01	k: 1248	n:10000
Cons ci ratio: 1.291907e-01	ci left: 7.882909e-02	ci right 8.981448e-02	k: 842	n:10000
KS ci ratio: 2.968502e-02	ci left: 6.259785e-01	ci right 6.449425e-01	k: 6355	n:10000
AHRR   10000 perm   2 sec   (6253 perm/sec)   p_kst 6.355000e-01   p_cons 8.420000e-02   p_joint 1.248000e-01

Joint ci ratio: 7.172118e-02	ci left: 1.252697e-01	ci right 1.346382e-01	k: 2598	n:20000
Cons ci ratio: 9.036206e-02	ci left: 8.210084e-02	ci right 8.992001e-02	k: 1719	n:20000
KS ci ratio: 2.094615e-02	ci left: 6.297892e-01	ci right 6.431711e-01	k: 12730	n:20000
AHRR   20000 perm   4 sec   (5496 perm/sec)   p_kst 6.365000e-01   p_cons 8.595000e-02   p_joint 1.299000e-01

Outputting figure to mutsig2_images.part000000000005/AHRR.2_2208_20000_0.6365_0.08595_0.1299.png
                gene_name: AHRR
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.086 
      ci_cons_bounds_left: 0.082 
     ci_cons_bounds_right: 0.090 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 85 percent done.
AHSA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.010744e-02	ci left: 2.893427e-01	ci right 3.073749e-01	k: 2983	n:10000
Cons ci ratio: 1.078422e-01	ci left: 1.103719e-01	ci right 1.230523e-01	k: 1166	n:10000
KS ci ratio: 3.369038e-02	ci left: 5.653406e-01	ci right 5.848156e-01	k: 5751	n:10000
AHSA2   10000 perm   1 sec   (7259 perm/sec)   p_kst 5.751000e-01   p_cons 1.166000e-01   p_joint 2.983000e-01

Joint ci ratio: 4.075242e-02	ci left: 3.098075e-01	ci right 3.227460e-01	k: 6325	n:20000
Cons ci ratio: 7.736872e-02	ci left: 1.093319e-01	ci right 1.181808e-01	k: 2274	n:20000
KS ci ratio: 2.364667e-02	ci left: 5.718709e-01	ci right 5.856062e-01	k: 11575	n:20000
AHSA2   20000 perm   3 sec   (6259 perm/sec)   p_kst 5.787500e-01   p_cons 1.137000e-01   p_joint 3.162500e-01

Outputting figure to mutsig2_images.part000000000005/AHSA2.2_430_20000_0.57875_0.1137_0.31625.png
                gene_name: AHSA2
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 87 percent done.
AICDA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.526754e-03	ci left: 9.777025e-01	ci right 9.832126e-01	k: 9806	n:10000
Cons ci ratio: 1.852876e-02	ci left: 8.096859e-01	ci right 8.249288e-01	k: 8174	n:10000
KS ci ratio: 5.003467e-01	ci left: 4.581663e-03	ci right 7.716529e-03	k: 60	n:10000
AICDA   10000 perm   1 sec   (7451 perm/sec)   p_kst 6.000000e-03   p_cons 8.174000e-01   p_joint 9.806000e-01

Joint ci ratio: 5.321033e-03	ci left: 9.618421e-01	ci right 9.670218e-01	k: 19290	n:20000
Cons ci ratio: 1.322192e-02	ci left: 8.091940e-01	ci right 8.200143e-01	k: 16293	n:20000
KS ci ratio: 3.693575e-01	ci left: 4.567803e-03	ci right 6.679840e-03	k: 111	n:20000
AICDA   20000 perm   3 sec   (6436 perm/sec)   p_kst 5.550000e-03   p_cons 8.146500e-01   p_joint 9.645000e-01

Joint ci ratio: 4.316196e-03	ci left: 9.627896e-01	ci right 9.669864e-01	k: 28948	n:30000
Cons ci ratio: 1.082830e-02	ci left: 8.092809e-01	ci right 8.181250e-01	k: 24412	n:30000
KS ci ratio: 3.130289e-01	ci left: 4.386948e-03	ci right 6.044432e-03	k: 155	n:30000
AICDA   30000 perm   5 sec   (6050 perm/sec)   p_kst 5.166667e-03   p_cons 8.137333e-01   p_joint 9.649333e-01

Joint ci ratio: 3.772369e-03	ci left: 9.624352e-01	ci right 9.660970e-01	k: 38572	n:40000
Cons ci ratio: 9.363873e-03	ci left: 8.103280e-01	ci right 8.179764e-01	k: 32567	n:40000
KS ci ratio: 2.737508e-01	ci left: 4.402273e-03	ci right 5.821036e-03	k: 203	n:40000
AICDA   40000 perm   7 sec   (5794 perm/sec)   p_kst 5.075000e-03   p_cons 8.141750e-01   p_joint 9.643000e-01

Joint ci ratio: 3.409985e-03	ci left: 9.618804e-01	ci right 9.651855e-01	k: 48178	n:50000
Cons ci ratio: 8.331382e-03	ci left: 8.123336e-01	ci right 8.191497e-01	k: 40788	n:50000
KS ci ratio: 2.401623e-01	ci left: 4.663632e-03	ci right 5.954827e-03	k: 264	n:50000
AICDA   50000 perm   9 sec   (5604 perm/sec)   p_kst 5.280000e-03   p_cons 8.157600e-01   p_joint 9.635600e-01

Joint ci ratio: 3.126464e-03	ci left: 9.617136e-01	ci right 9.647414e-01	k: 57795	n:60000
Cons ci ratio: 7.603184e-03	ci left: 8.127250e-01	ci right 8.189444e-01	k: 48951	n:60000
KS ci ratio: 2.145401e-01	ci left: 4.939689e-03	ci right 6.142233e-03	k: 331	n:60000
AICDA   60000 perm   11 sec   (5438 perm/sec)   p_kst 5.516667e-03   p_cons 8.158500e-01   p_joint 9.632500e-01

Joint ci ratio: 2.920924e-03	ci left: 9.611680e-01	ci right 9.639935e-01	k: 67382	n:70000
Cons ci ratio: 7.014228e-03	ci left: 8.140291e-01	ci right 8.197732e-01	k: 57184	n:70000
KS ci ratio: 1.997525e-01	ci left: 4.924832e-03	ci right 6.031054e-03	k: 382	n:70000
AICDA   70000 perm   13 sec   (5275 perm/sec)   p_kst 5.457143e-03   p_cons 8.169143e-01   p_joint 9.626000e-01

Joint ci ratio: 2.745469e-03	ci left: 9.609062e-01	ci right 9.635602e-01	k: 76980	n:80000
Cons ci ratio: 6.561790e-03	ci left: 8.141897e-01	ci right 8.195623e-01	k: 65351	n:80000
KS ci ratio: 1.838585e-01	ci left: 5.130421e-03	ci right 6.180917e-03	k: 451	n:80000
AICDA   80000 perm   16 sec   (5147 perm/sec)   p_kst 5.637500e-03   p_cons 8.168875e-01   p_joint 9.622500e-01

Joint ci ratio: 1.170907e-01	ci left: 1.157931e-02	ci right 1.303016e-02	k: 1106	n:90000
Cons ci ratio: 6.197506e-03	ci left: 8.138102e-01	ci right 8.188805e-01	k: 73472	n:90000
KS ci ratio: 1.712396e-01	ci left: 5.293042e-03	ci right 6.294771e-03	k: 520	n:90000
AICDA   90000 perm   18 sec   (5016 perm/sec)   p_kst 5.777778e-03   p_cons 8.163556e-01   p_joint 1.228889e-02

Joint ci ratio: 1.108542e-01	ci left: 1.166493e-02	ci right 1.304357e-02	k: 1234	n:100000
Cons ci ratio: 5.866631e-03	ci left: 8.145993e-01	ci right 8.194023e-01	k: 81701	n:100000
KS ci ratio: 1.638659e-01	ci left: 5.223600e-03	ci right 6.165419e-03	k: 568	n:100000
AICDA   100000 perm   20 sec   (4904 perm/sec)   p_kst 5.680000e-03   p_cons 8.170100e-01   p_joint 1.234000e-02

Joint ci ratio: 1.048969e-01	ci left: 1.187834e-02	ci right 1.320210e-02	k: 1378	n:110000
Cons ci ratio: 5.606207e-03	ci left: 8.140353e-01	ci right 8.186208e-01	k: 89797	n:110000
KS ci ratio: 1.556038e-01	ci left: 5.289857e-03	ci right 6.191048e-03	k: 630	n:110000
AICDA   110000 perm   23 sec   (4798 perm/sec)   p_kst 5.727273e-03   p_cons 8.163364e-01   p_joint 1.252727e-02

Joint ci ratio: 1.004096e-01	ci left: 1.191153e-02	ci right 1.317886e-02	k: 1504	n:120000
Cons ci ratio: 5.371464e-03	ci left: 8.139131e-01	ci right 8.183050e-01	k: 97934	n:120000
KS ci ratio: 1.486932e-01	ci left: 5.330014e-03	ci right 6.194134e-03	k: 690	n:120000
AICDA   120000 perm   26 sec   (4700 perm/sec)   p_kst 5.750000e-03   p_cons 8.161167e-01   p_joint 1.253333e-02

Joint ci ratio: 9.690530e-02	ci left: 1.182801e-02	ci right 1.304003e-02	k: 1615	n:130000
Cons ci ratio: 5.157978e-03	ci left: 8.141609e-01	ci right 8.183788e-01	k: 106116	n:130000
KS ci ratio: 1.435933e-01	ci left: 5.290559e-03	ci right 6.116340e-03	k: 740	n:130000
AICDA   130000 perm   28 sec   (4606 perm/sec)   p_kst 5.692308e-03   p_cons 8.162769e-01   p_joint 1.242308e-02

Joint ci ratio: 9.349755e-02	ci left: 1.181989e-02	ci right 1.298615e-02	k: 1735	n:140000
Cons ci ratio: 4.974702e-03	ci left: 8.139745e-01	ci right 8.180410e-01	k: 114242	n:140000
KS ci ratio: 1.393391e-01	ci left: 5.229593e-03	ci right 6.019666e-03	k: 786	n:140000
AICDA   140000 perm   31 sec   (4517 perm/sec)   p_kst 5.614286e-03   p_cons 8.160143e-01   p_joint 1.239286e-02

Joint ci ratio: 9.089800e-02	ci left: 1.168967e-02	ci right 1.280930e-02	k: 1836	n:150000
Cons ci ratio: 4.803472e-03	ci left: 8.142037e-01	ci right 8.181307e-01	k: 122426	n:150000
KS ci ratio: 1.357700e-01	ci left: 5.151303e-03	ci right 5.908003e-03	k: 828	n:150000
AICDA   150000 perm   34 sec   (4430 perm/sec)   p_kst 5.520000e-03   p_cons 8.161733e-01   p_joint 1.224000e-02

Joint ci ratio: 8.820475e-02	ci left: 1.165560e-02	ci right 1.273718e-02	k: 1950	n:160000
Cons ci ratio: 4.646458e-03	ci left: 8.145569e-01	ci right 8.183567e-01	k: 130634	n:160000
KS ci ratio: 1.319297e-01	ci left: 5.125338e-03	ci right 5.855257e-03	k: 877	n:160000
AICDA   160000 perm   37 sec   (4349 perm/sec)   p_kst 5.481250e-03   p_cons 8.164625e-01   p_joint 1.218750e-02

Joint ci ratio: 8.534096e-02	ci left: 1.173537e-02	ci right 1.278724e-02	k: 2083	n:170000
Cons ci ratio: 4.510612e-03	ci left: 8.144214e-01	ci right 8.181090e-01	k: 138766	n:170000
KS ci ratio: 1.288176e-01	ci left: 5.068529e-03	ci right 5.772029e-03	k: 920	n:170000
AICDA   170000 perm   40 sec   (4271 perm/sec)   p_kst 5.411765e-03   p_cons 8.162706e-01   p_joint 1.225294e-02

Joint ci ratio: 8.304305e-02	ci left: 1.171972e-02	ci right 1.274053e-02	k: 2200	n:180000
Cons ci ratio: 4.383745e-03	ci left: 8.144586e-01	ci right 8.180423e-01	k: 146926	n:180000
KS ci ratio: 1.256540e-01	ci left: 5.039740e-03	ci right 5.720784e-03	k: 967	n:180000
AICDA   180000 perm   43 sec   (4196 perm/sec)   p_kst 5.372222e-03   p_cons 8.162556e-01   p_joint 1.222222e-02

Joint ci ratio: 8.085069e-02	ci left: 1.172668e-02	ci right 1.271986e-02	k: 2321	n:190000
Cons ci ratio: 4.266491e-03	ci left: 8.145302e-01	ci right 8.180180e-01	k: 155093	n:190000
KS ci ratio: 1.224701e-01	ci left: 5.034581e-03	ci right 5.696438e-03	k: 1018	n:190000
AICDA   190000 perm   46 sec   (4121 perm/sec)   p_kst 5.357895e-03   p_cons 8.162789e-01   p_joint 1.221579e-02

Joint ci ratio: 7.888869e-02	ci left: 1.171366e-02	ci right 1.268055e-02	k: 2438	n:200000
Cons ci ratio: 4.156019e-03	ci left: 8.147514e-01	ci right 8.181495e-01	k: 163291	n:200000
KS ci ratio: 1.191811e-01	ci left: 5.059242e-03	ci right 5.705221e-03	k: 1075	n:200000
AICDA   200000 perm   49 sec   (4049 perm/sec)   p_kst 5.375000e-03   p_cons 8.164550e-01   p_joint 1.219000e-02

Joint ci ratio: 7.665410e-02	ci left: 1.182827e-02	ci right 1.277574e-02	k: 2582	n:210000
Cons ci ratio: 4.056539e-03	ci left: 8.147422e-01	ci right 8.180586e-01	k: 171445	n:210000
KS ci ratio: 1.159893e-01	ci left: 5.095643e-03	ci right 5.727651e-03	k: 1135	n:210000
AICDA   210000 perm   53 sec   (3980 perm/sec)   p_kst 5.404762e-03   p_cons 8.164048e-01   p_joint 1.229524e-02

Joint ci ratio: 7.489171e-02	ci left: 1.183912e-02	ci right 1.276470e-02	k: 2705	n:220000
Cons ci ratio: 3.964056e-03	ci left: 8.147210e-01	ci right 8.179615e-01	k: 179596	n:220000
KS ci ratio: 1.134230e-01	ci left: 5.093604e-03	ci right 5.710446e-03	k: 1187	n:220000
AICDA   220000 perm   56 sec   (3913 perm/sec)   p_kst 5.395455e-03   p_cons 8.163455e-01   p_joint 1.229545e-02

Joint ci ratio: 7.344292e-02	ci left: 1.178522e-02	ci right 1.268800e-02	k: 2813	n:230000
Cons ci ratio: 3.875880e-03	ci left: 8.148378e-01	ci right 8.180064e-01	k: 187778	n:230000
KS ci ratio: 1.115638e-01	ci left: 5.041155e-03	ci right 5.640980e-03	k: 1227	n:230000
AICDA   230000 perm   60 sec   (3850 perm/sec)   p_kst 5.334783e-03   p_cons 8.164261e-01   p_joint 1.223043e-02

Joint ci ratio: 7.182664e-02	ci left: 1.181782e-02	ci right 1.270235e-02	k: 2941	n:240000
Cons ci ratio: 3.793601e-03	ci left: 8.149246e-01	ci right 8.180261e-01	k: 195955	n:240000
KS ci ratio: 1.091888e-01	ci left: 5.049896e-03	ci right 5.637147e-03	k: 1281	n:240000
AICDA   240000 perm   63 sec   (3789 perm/sec)   p_kst 5.337500e-03   p_cons 8.164792e-01   p_joint 1.225417e-02

Joint ci ratio: 7.046377e-02	ci left: 1.179692e-02	ci right 1.266244e-02	k: 3056	n:250000
Cons ci ratio: 3.716498e-03	ci left: 8.149931e-01	ci right 8.180316e-01	k: 204129	n:250000
KS ci ratio: 1.074455e-01	ci left: 5.011344e-03	ci right 5.584218e-03	k: 1323	n:250000
AICDA   250000 perm   67 sec   (3729 perm/sec)   p_kst 5.292000e-03   p_cons 8.165160e-01   p_joint 1.222400e-02

Joint ci ratio: 6.886858e-02	ci left: 1.188363e-02	ci right 1.273498e-02	k: 3199	n:260000
Cons ci ratio: 3.643444e-03	ci left: 8.150954e-01	ci right 8.180744e-01	k: 212313	n:260000
KS ci ratio: 1.053959e-01	ci left: 5.013276e-03	ci right 5.574761e-03	k: 1375	n:260000
AICDA   260000 perm   71 sec   (3669 perm/sec)   p_kst 5.288462e-03   p_cons 8.165885e-01   p_joint 1.230385e-02

Joint ci ratio: 6.756141e-02	ci left: 1.189857e-02	ci right 1.273417e-02	k: 3324	n:270000
Cons ci ratio: 3.576127e-03	ci left: 8.150570e-01	ci right 8.179806e-01	k: 220461	n:270000
KS ci ratio: 1.028815e-01	ci left: 5.072900e-03	ci right 5.626689e-03	k: 1443	n:270000
AICDA   270000 perm   75 sec   (3613 perm/sec)   p_kst 5.344444e-03   p_cons 8.165222e-01   p_joint 1.231111e-02

Joint ci ratio: 6.618045e-02	ci left: 1.196527e-02	ci right 1.278773e-02	k: 3464	n:280000
Cons ci ratio: 3.510231e-03	ci left: 8.152081e-01	ci right 8.180782e-01	k: 228661	n:280000
KS ci ratio: 1.007063e-01	ci left: 5.111002e-03	ci right 5.656456e-03	k: 1506	n:280000
AICDA   280000 perm   79 sec   (3558 perm/sec)   p_kst 5.378571e-03   p_cons 8.166464e-01   p_joint 1.237143e-02

Joint ci ratio: 6.534121e-02	ci left: 1.185789e-02	ci right 1.266224e-02	k: 3554	n:290000
Cons ci ratio: 3.448442e-03	ci left: 8.152973e-01	ci right 8.181171e-01	k: 236846	n:290000
KS ci ratio: 9.930149e-02	ci left: 5.079323e-03	ci right 5.613394e-03	k: 1549	n:290000
AICDA   290000 perm   83 sec   (3506 perm/sec)   p_kst 5.341379e-03   p_cons 8.167103e-01   p_joint 1.225517e-02

Outputting figure to mutsig2_images.part000000000005/AICDA.2_617_290000_0.0053414_0.81671_0.012255.png
                gene_name: AICDA
               theta_stop: 0.099 
                    nperm: 290000 
                     p_ks: 0.0053 
        ci_ks_bounds_left: 0.0051 
       ci_ks_bounds_right: 0.0056 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.012 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.013 

Current progress: 89 percent done.
AIFM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.728838e-02	ci left: 3.975486e-01	ci right 4.169054e-01	k: 4072	n:10000
Cons ci ratio: 5.950997e-02	ci left: 2.935057e-01	ci right 3.116095e-01	k: 3025	n:10000
KS ci ratio: 8.885890e-02	ci left: 1.556131e-01	ci right 1.701838e-01	k: 1628	n:10000
AIFM3   10000 perm   2 sec   (5987 perm/sec)   p_kst 1.628000e-01   p_cons 3.025000e-01   p_joint 4.072000e-01

Outputting figure to mutsig2_images.part000000000005/AIFM3.2_1916_10000_0.1628_0.3025_0.4072.png
                gene_name: AIFM3
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 91 percent done.
AIM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.760589e-02	ci left: 3.072893e-01	ci right 3.256177e-01	k: 3164	n:10000
Cons ci ratio: 1.384084e-02	ci left: 8.828843e-01	ci right 8.952880e-01	k: 8892	n:10000
KS ci ratio: 9.817468e-02	ci left: 1.307088e-01	ci right 1.443032e-01	k: 1374	n:10000
AIM2   10000 perm   1 sec   (6700 perm/sec)   p_kst 1.374000e-01   p_cons 8.892000e-01   p_joint 3.164000e-01

Outputting figure to mutsig2_images.part000000000005/AIM2.2_1052_10000_0.1374_0.8892_0.3164.png
                gene_name: AIM2
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 93 percent done.
AIMP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.582613e-01	ci left: 5.320919e-02	ci right 6.245049e-02	k: 577	n:10000
Cons ci ratio: 1.818499e-01	ci left: 4.035041e-02	ci right 4.851765e-02	k: 443	n:10000
KS ci ratio: 3.926472e-02	ci left: 4.892517e-01	ci right 5.089489e-01	k: 4991	n:10000
AIMP2   10000 perm   1 sec   (7070 perm/sec)   p_kst 4.991000e-01   p_cons 4.430000e-02   p_joint 5.770000e-02

Joint ci ratio: 7.234636e-02	ci left: 1.233499e-01	ci right 1.326585e-01	k: 2559	n:20000
Cons ci ratio: 1.105463e-01	ci left: 5.587115e-02	ci right 6.245774e-02	k: 1182	n:20000
KS ci ratio: 2.794190e-02	ci left: 4.889967e-01	ci right 5.029045e-01	k: 9919	n:20000
AIMP2   20000 perm   3 sec   (5968 perm/sec)   p_kst 4.959500e-01   p_cons 5.910000e-02   p_joint 1.279500e-01

Joint ci ratio: 5.143583e-02	ci left: 1.580118e-01	ci right 1.663871e-01	k: 4865	n:30000
Cons ci ratio: 9.013996e-02	ci left: 5.662084e-02	ci right 6.199823e-02	k: 1778	n:30000
KS ci ratio: 2.277174e-02	ci left: 4.912260e-01	ci right 5.025746e-01	k: 14907	n:30000
AIMP2   30000 perm   5 sec   (5678 perm/sec)   p_kst 4.969000e-01   p_cons 5.926667e-02   p_joint 1.621667e-01

Outputting figure to mutsig2_images.part000000000005/AIMP2.2_979_30000_0.4969_0.059267_0.16217.png
                gene_name: AIMP2
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.059 
      ci_cons_bounds_left: 0.057 
     ci_cons_bounds_right: 0.062 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 96 percent done.
AIRE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.934937e-02	ci left: 7.961830e-01	ci right 8.118395e-01	k: 8041	n:10000
KS ci ratio: 1.341604e-02	ci left: 8.890312e-01	ci right 9.011376e-01	k: 8952	n:10000
AIRE   10000 perm   2 sec   (6086 perm/sec)   p_kst 8.952000e-01   p_cons 8.041000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000005/AIRE.2_1982_10000_0.8952_0.8041_1.png
                gene_name: AIRE
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
AKAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.564081e-02	ci left: 8.557989e-01	ci right 8.693892e-01	k: 8627	n:10000
Cons ci ratio: 1.712277e-02	ci left: 8.324623e-01	ci right 8.469393e-01	k: 8398	n:10000
KS ci ratio: 4.628462e-02	ci left: 4.079093e-01	ci right 4.273387e-01	k: 4176	n:10000
AKAP1   10000 perm   2 sec   (5816 perm/sec)   p_kst 4.176000e-01   p_cons 8.398000e-01   p_joint 8.627000e-01

Outputting figure to mutsig2_images.part000000000005/AKAP1.2_2752_10000_0.4176_0.8398_0.8627.png
                gene_name: AKAP1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000005
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 5 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1708>
Subject: Job 8003806: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1708>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000006> was used as the working directory.
Started at Sun Nov 11 15:03:15 2012
Results reported at Sun Nov 11 15:09:25 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000006.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000006.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 6  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000006.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    397.38 sec.
    Max Memory :      4725 MB
    Max Swap   :      7072 MB

    Max Processes  :         7
    Max Threads    :        60

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
6
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 6
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 6: processing genes 453 - 543
Calculating significance of each gene.
Using projection method.
453	AKAP5	8.293311e-01
454	AKAP6	3.988188e-01
455	AKAP7	4.531348e-01
456	AKAP8	2.153228e-01
457	AKAP8L	1
458	AKAP9	9.999902e-01
459	AKD1	5.572657e-01
460	AKIRIN1	3.364353e-01
461	AKIRIN2	1
462	AKNA	9.601916e-01
463	AKNAD1	4.565644e-01
464	AKR1A1	1
465	AKR1B1	5.305520e-01
466	AKR1B10	4.366881e-01
467	AKR1B15	3.436923e-01
468	AKR1C1	1
469	AKR1C2	6.283941e-01
470	AKR1C3	6.062596e-01
471	AKR1C4	4.681611e-01
472	AKR1D1	5.852117e-02
473	AKR1E2	1
474	AKR7A2	1
475	AKR7A3	1
476	AKR7L	1
477	AKT1	7.091468e-01
478	AKT1S1	2.270846e-01
479	AKT2	1
480	AKT3	3.747138e-01
481	AKTIP	1
482	ALAD	1
483	ALAS1	1
484	ALAS2	1
485	ALB	4.976948e-01
486	ALCAM	1
487	ALDH16A1	6.336588e-01
488	ALDH18A1	6.766150e-01
489	ALDH1A1	1
490	ALDH1A2	2.013199e-01
491	ALDH1A3	1
492	ALDH1B1	6.471884e-01
493	ALDH1L1	1
494	ALDH1L2	4.974120e-01
495	ALDH2	6.340281e-01
496	ALDH3A1	5.149231e-01
497	ALDH3A2	1
498	ALDH3B1	1
499	ALDH3B2	6.158862e-01
500	ALDH4A1	7.573011e-01
501	ALDH5A1	1
502	ALDH6A1	7.401057e-01
503	ALDH7A1	1
504	ALDH8A1	5.943432e-01
505	ALDH9A1	5.798552e-01
506	ALDOA	6.669139e-01
507	ALDOB	4.349495e-01
508	ALDOC	1
509	ALG1	7.878010e-01
510	ALG10	1
511	ALG10B	8.478667e-01
512	ALG11	1
513	ALG12	7.870920e-01
514	ALG13	3.139518e-02
515	ALG14	1
516	ALG1L	3.159904e-01
517	ALG1L2	1
518	ALG2	5.595739e-01
519	ALG3	1
520	ALG5	3.060794e-01
521	ALG6	4.439983e-01
522	ALG8	8.738341e-01
523	ALG9	7.729370e-01
524	ALK	9.656487e-01
525	ALKBH1	1
526	ALKBH2	1
527	ALKBH3	3.260038e-01
528	ALKBH4	1
529	ALKBH5	1
530	ALKBH6	5.681582e-01
531	ALKBH7	1
532	ALKBH8	1.292132e-01
533	ALLC	2.303916e-01
534	ALMS1	9.996086e-01
535	ALOX12	1
536	ALOX12B	9.498772e-01
537	ALOX15	4.679867e-01
538	ALOX15B	9.547658e-01
539	ALOX5	1
540	ALOX5AP	1
541	ALOXE3	8.842520e-01
542	ALPI	1
543	ALPK1	1
Done

Running MutSig 2:
Scatter job 6: processing genes 453 - 543
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ALMS1
Processing conservation and coverage...
79% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.083508e-02	ci left: 4.696656e-01	ci right 4.893464e-01	k: 4795	n:10000
Cons ci ratio: 7.357380e-02	ci left: 2.128999e-01	ci right 2.292629e-01	k: 2210	n:10000
KS ci ratio: 3.157826e-02	ci left: 5.967448e-01	ci right 6.159932e-01	k: 6064	n:10000
ALMS1   10000 perm   4 sec   (2544 perm/sec)   p_kst 6.064000e-01   p_cons 2.210000e-01   p_joint 4.795000e-01

Outputting figure to mutsig2_images.part000000000006/ALMS1.23_12596_10000_0.6064_0.221_0.4795.png
                gene_name: ALMS1
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 3 percent done.
AKAP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.833363e-02	ci left: 5.012506e-01	ci right 5.209430e-01	k: 5111	n:10000
Cons ci ratio: 1.086698e-02	ci left: 9.234805e-01	ci right 9.336681e-01	k: 9287	n:10000
KS ci ratio: 4.876921e-02	ci left: 3.828123e-01	ci right 4.020504e-01	k: 3924	n:10000
AKAP6   10000 perm   3 sec   (3660 perm/sec)   p_kst 3.924000e-01   p_cons 9.287000e-01   p_joint 5.111000e-01

Outputting figure to mutsig2_images.part000000000006/AKAP6.15_7008_10000_0.3924_0.9287_0.5111.png
                gene_name: AKAP6
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 6 percent done.
AKAP9
Processing conservation and coverage...
83% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.131927e-02	ci left: 9.177038e-01	ci right 9.282482e-01	k: 9231	n:10000
Cons ci ratio: 4.719059e-02	ci left: 3.985447e-01	ci right 4.179088e-01	k: 4082	n:10000
KS ci ratio: 2.531331e-02	ci left: 6.966589e-01	ci right 7.146211e-01	k: 7057	n:10000
AKAP9   10000 perm   3 sec   (2961 perm/sec)   p_kst 7.057000e-01   p_cons 4.082000e-01   p_joint 9.231000e-01

Outputting figure to mutsig2_images.part000000000006/AKAP9.11_11924_10000_0.7057_0.4082_0.9231.png
                gene_name: AKAP9
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 8 percent done.
AKD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.233711e-02	ci left: 4.516917e-01	ci right 4.713307e-01	k: 4615	n:10000
Cons ci ratio: 4.035556e-02	ci left: 4.755598e-01	ci right 4.952487e-01	k: 4854	n:10000
KS ci ratio: 5.268928e-02	ci left: 3.468072e-01	ci right 3.656766e-01	k: 3562	n:10000
AKD1   10000 perm   2 sec   (4158 perm/sec)   p_kst 3.562000e-01   p_cons 4.854000e-01   p_joint 4.615000e-01

Outputting figure to mutsig2_images.part000000000006/AKD1.9_5908_10000_0.3562_0.4854_0.4615.png
                gene_name: AKD1
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 11 percent done.
ALG13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.418244e-02	ci left: 8.778686e-01	ci right 8.905067e-01	k: 8843	n:10000
KS ci ratio: 9.150557e-03	ci left: 9.438819e-01	ci right 9.526547e-01	k: 9484	n:10000
ALG13   10000 perm   2 sec   (4593 perm/sec)   p_kst 9.484000e-01   p_cons 8.843000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000006/ALG13.8_3664_10000_0.9484_0.8843_1.png
                gene_name: ALG13
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 14 percent done.
AKNA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.690941e-02	ci left: 5.201603e-01	ci right 5.398222e-01	k: 5300	n:10000
KS ci ratio: 2.278258e-02	ci left: 7.388637e-01	ci right 7.559919e-01	k: 7475	n:10000
AKNA   10000 perm   2 sec   (4788 perm/sec)   p_kst 7.475000e-01   p_cons 5.300000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000006/AKNA.6_4404_10000_0.7475_0.53_1.png
                gene_name: AKNA
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 17 percent done.
AKAP8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.890621e-02	ci left: 8.034910e-01	ci right 8.189273e-01	k: 8113	n:10000
Cons ci ratio: 2.518543e-02	ci left: 6.987770e-01	ci right 7.167018e-01	k: 7078	n:10000
KS ci ratio: 2.992248e-02	ci left: 6.222595e-01	ci right 6.412637e-01	k: 6318	n:10000
AKAP8   10000 perm   2 sec   (5656 perm/sec)   p_kst 6.318000e-01   p_cons 7.078000e-01   p_joint 8.113000e-01

Outputting figure to mutsig2_images.part000000000006/AKAP8.5_2135_10000_0.6318_0.7078_0.8113.png
                gene_name: AKAP8
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 19 percent done.
ALDH1L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.597292e-02	ci left: 6.857695e-01	ci right 7.039168e-01	k: 6949	n:10000
Cons ci ratio: 1.825522e-02	ci left: 8.141562e-01	ci right 8.292559e-01	k: 8218	n:10000
KS ci ratio: 4.261923e-02	ci left: 4.483979e-01	ci right 4.680265e-01	k: 4582	n:10000
ALDH1L1   10000 perm   2 sec   (5037 perm/sec)   p_kst 4.582000e-01   p_cons 8.218000e-01   p_joint 6.949000e-01

Outputting figure to mutsig2_images.part000000000006/ALDH1L1.5_2797_10000_0.4582_0.8218_0.6949.png
                gene_name: ALDH1L1
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.70 

Current progress: 22 percent done.
ALK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.221543e-02	ci left: 7.483685e-01	ci right 7.652816e-01	k: 7569	n:10000
Cons ci ratio: 6.320387e-02	ci left: 2.689378e-01	ci right 2.865919e-01	k: 2777	n:10000
KS ci ratio: 2.276448e-02	ci left: 7.391670e-01	ci right 7.562885e-01	k: 7478	n:10000
ALK   10000 perm   2 sec   (4405 perm/sec)   p_kst 7.478000e-01   p_cons 2.777000e-01   p_joint 7.569000e-01

Outputting figure to mutsig2_images.part000000000006/ALK.5_4979_10000_0.7478_0.2777_0.7569.png
                gene_name: ALK
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 25 percent done.
AKNAD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.349549e-02	ci left: 1.730058e-01	ci right 1.881808e-01	k: 1805	n:10000
Cons ci ratio: 4.184646e-02	ci left: 4.574819e-01	ci right 4.771372e-01	k: 4673	n:10000
KS ci ratio: 1.082627e-01	ci left: 1.095910e-01	ci right 1.222338e-01	k: 1158	n:10000
AKNAD1   10000 perm   2 sec   (5358 perm/sec)   p_kst 1.158000e-01   p_cons 4.673000e-01   p_joint 1.805000e-01

Joint ci ratio: 5.182203e-02	ci left: 2.166523e-01	ci right 2.282285e-01	k: 4448	n:20000
Cons ci ratio: 3.076864e-02	ci left: 4.410411e-01	ci right 4.548740e-01	k: 8959	n:20000
KS ci ratio: 7.702532e-02	ci left: 1.102166e-01	ci right 1.190958e-01	k: 2292	n:20000
AKNAD1   20000 perm   4 sec   (4857 perm/sec)   p_kst 1.146000e-01   p_cons 4.479500e-01   p_joint 2.224000e-01

Outputting figure to mutsig2_images.part000000000006/AKNAD1.4_2571_20000_0.1146_0.44795_0.2224.png
                gene_name: AKNAD1
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 28 percent done.
AKR1D1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.565297e-02	ci left: 4.145864e-01	ci right 4.340577e-01	k: 4243	n:10000
Cons ci ratio: 7.532587e-02	ci left: 2.050098e-01	ci right 2.211576e-01	k: 2130	n:10000
KS ci ratio: 2.248092e-02	ci left: 7.439188e-01	ci right 7.609339e-01	k: 7525	n:10000
AKR1D1   10000 perm   2 sec   (5377 perm/sec)   p_kst 7.525000e-01   p_cons 2.130000e-01   p_joint 4.243000e-01

Outputting figure to mutsig2_images.part000000000006/AKR1D1.4_1017_10000_0.7525_0.213_0.4243.png
                gene_name: AKR1D1
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 31 percent done.
ALB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.055584e-02	ci left: 6.124120e-01	ci right 6.315169e-01	k: 6220	n:10000
Cons ci ratio: 7.470260e-02	ci left: 2.077708e-01	ci right 2.239950e-01	k: 2158	n:10000
KS ci ratio: 2.342233e-02	ci left: 7.281518e-01	ci right 7.455101e-01	k: 7369	n:10000
ALB   10000 perm   2 sec   (5513 perm/sec)   p_kst 7.369000e-01   p_cons 2.158000e-01   p_joint 6.220000e-01

Outputting figure to mutsig2_images.part000000000006/ALB.4_1886_10000_0.7369_0.2158_0.622.png
                gene_name: ALB
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 33 percent done.
ALDH1A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.751552e-02	ci left: 8.261534e-01	ci right 8.408517e-01	k: 8336	n:10000
Cons ci ratio: 3.554632e-02	ci left: 5.388838e-01	ci right 5.584878e-01	k: 5487	n:10000
KS ci ratio: 2.213094e-02	ci left: 7.497846e-01	ci right 7.666647e-01	k: 7583	n:10000
ALDH1A2   10000 perm   2 sec   (5271 perm/sec)   p_kst 7.583000e-01   p_cons 5.487000e-01   p_joint 8.336000e-01

Outputting figure to mutsig2_images.part000000000006/ALDH1A2.4_1609_10000_0.7583_0.5487_0.8336.png
                gene_name: ALDH1A2
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 36 percent done.
ALDH1L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.014148e-02	ci left: 6.188425e-01	ci right 6.378826e-01	k: 6284	n:10000
KS ci ratio: 9.848396e-03	ci left: 9.358910e-01	ci right 9.452503e-01	k: 9407	n:10000
ALDH1L2   10000 perm   2 sec   (5585 perm/sec)   p_kst 9.407000e-01   p_cons 6.284000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000006/ALDH1L2.4_2864_10000_0.9407_0.6284_1.png
                gene_name: ALDH1L2
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 39 percent done.
AKT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.697569e-02	ci left: 6.693457e-01	ci right 6.877502e-01	k: 6786	n:10000
KS ci ratio: 1.234719e-02	ci left: 9.040153e-01	ci right 9.153447e-01	k: 9098	n:10000
AKT3   10000 perm   2 sec   (6152 perm/sec)   p_kst 9.098000e-01   p_cons 6.786000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000006/AKT3.3_1540_10000_0.9098_0.6786_1.png
                gene_name: AKT3
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 42 percent done.
ALCAM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.075896e-02	ci left: 3.640070e-01	ci right 3.830667e-01	k: 3735	n:10000
Cons ci ratio: 1.532580e-01	ci left: 5.667674e-02	ci right 6.618073e-02	k: 613	n:10000
KS ci ratio: 3.177040e-02	ci left: 5.938334e-01	ci right 6.131063e-01	k: 6035	n:10000
ALCAM   10000 perm   2 sec   (6018 perm/sec)   p_kst 6.035000e-01   p_cons 6.130000e-02   p_joint 3.735000e-01

Joint ci ratio: 3.647792e-02	ci left: 3.593188e-01	ci right 3.727201e-01	k: 7320	n:20000
Cons ci ratio: 1.076732e-01	ci left: 5.879414e-02	ci right 6.553384e-02	k: 1242	n:20000
KS ci ratio: 2.243811e-02	ci left: 5.972826e-01	ci right 6.108871e-01	k: 12082	n:20000
ALCAM   20000 perm   4 sec   (5352 perm/sec)   p_kst 6.041000e-01   p_cons 6.210000e-02   p_joint 3.660000e-01

Joint ci ratio: 2.943113e-02	ci left: 3.660946e-01	ci right 3.770636e-01	k: 11147	n:30000
Cons ci ratio: 7.974886e-02	ci left: 7.155329e-02	ci right 7.752942e-02	k: 2235	n:30000
KS ci ratio: 1.842070e-02	ci left: 5.959336e-01	ci right 6.070467e-01	k: 18045	n:30000
ALCAM   30000 perm   6 sec   (5078 perm/sec)   p_kst 6.015000e-01   p_cons 7.450000e-02   p_joint 3.715667e-01

Outputting figure to mutsig2_images.part000000000006/ALCAM.3_1812_30000_0.6015_0.0745_0.37157.png
                gene_name: ALCAM
               theta_stop: 0.080 
                    nperm: 30000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.074 
      ci_cons_bounds_left: 0.072 
     ci_cons_bounds_right: 0.078 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.38 

Current progress: 44 percent done.
ALDH18A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.246035e-02	ci left: 3.487950e-01	ci right 3.676877e-01	k: 3582	n:10000
Cons ci ratio: 5.539147e-02	ci left: 3.243584e-01	ci right 3.429386e-01	k: 3336	n:10000
KS ci ratio: 5.595672e-02	ci left: 3.198913e-01	ci right 3.384084e-01	k: 3291	n:10000
ALDH18A1   10000 perm   2 sec   (5641 perm/sec)   p_kst 3.291000e-01   p_cons 3.336000e-01   p_joint 3.582000e-01

Outputting figure to mutsig2_images.part000000000006/ALDH18A1.3_2456_10000_0.3291_0.3336_0.3582.png
                gene_name: ALDH18A1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 47 percent done.
ALDH4A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.010601e-02	ci left: 4.786573e-01	ci right 4.983494e-01	k: 4885	n:10000
Cons ci ratio: 1.141455e-02	ci left: 9.164670e-01	ci right 9.270857e-01	k: 9219	n:10000
KS ci ratio: 5.534169e-02	ci left: 3.247555e-01	ci right 3.433413e-01	k: 3340	n:10000
ALDH4A1   10000 perm   2 sec   (5986 perm/sec)   p_kst 3.340000e-01   p_cons 9.219000e-01   p_joint 4.885000e-01

Outputting figure to mutsig2_images.part000000000006/ALDH4A1.3_1752_10000_0.334_0.9219_0.4885.png
                gene_name: ALDH4A1
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 50 percent done.
ALG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.594306e-02	ci left: 2.524128e-01	ci right 2.697266e-01	k: 2610	n:10000
Cons ci ratio: 1.019918e-01	ci left: 1.220977e-01	ci right 1.353194e-01	k: 1286	n:10000
KS ci ratio: 6.065741e-02	ci left: 2.855770e-01	ci right 3.035428e-01	k: 2945	n:10000
ALG2   10000 perm   2 sec   (6191 perm/sec)   p_kst 2.945000e-01   p_cons 1.286000e-01   p_joint 2.610000e-01

Joint ci ratio: 6.405925e-02	ci left: 1.526246e-01	ci right 1.627751e-01	k: 3153	n:20000
Cons ci ratio: 7.247628e-02	ci left: 1.229562e-01	ci right 1.322524e-01	k: 2551	n:20000
KS ci ratio: 4.254826e-02	ci left: 2.915665e-01	ci right 3.042923e-01	k: 5958	n:20000
ALG2   20000 perm   4 sec   (5531 perm/sec)   p_kst 2.979000e-01   p_cons 1.275500e-01   p_joint 1.576500e-01

Outputting figure to mutsig2_images.part000000000006/ALG2.3_1259_20000_0.2979_0.12755_0.15765.png
                gene_name: ALG2
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 53 percent done.
ALLC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.795366e-03	ci left: 9.756767e-01	ci right 9.814398e-01	k: 9787	n:10000
KS ci ratio: 3.222363e-02	ci left: 5.870082e-01	ci right 6.063355e-01	k: 5967	n:10000
ALLC   10000 perm   2 sec   (6242 perm/sec)   p_kst 5.967000e-01   p_cons 9.787000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000006/ALLC.3_1220_10000_0.5967_0.9787_1.png
                gene_name: ALLC
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 56 percent done.
ALOX15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.600354e-02	ci left: 6.852655e-01	ci right 7.034211e-01	k: 6944	n:10000
KS ci ratio: 2.126700e-02	ci left: 7.642560e-01	ci right 7.807849e-01	k: 7726	n:10000
ALOX15   10000 perm   2 sec   (6245 perm/sec)   p_kst 7.726000e-01   p_cons 6.944000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000006/ALOX15.3_2045_10000_0.7726_0.6944_1.png
                gene_name: ALOX15
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 58 percent done.
ALPK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.526715e-02	ci left: 3.253512e-01	ci right 3.439452e-01	k: 3346	n:10000
Cons ci ratio: 8.363681e-02	ci left: 1.725141e-01	ci right 1.876728e-01	k: 1800	n:10000
KS ci ratio: 3.885856e-02	ci left: 4.944505e-01	ci right 5.141470e-01	k: 5043	n:10000
ALPK1   10000 perm   2 sec   (5104 perm/sec)   p_kst 5.043000e-01   p_cons 1.800000e-01   p_joint 3.346000e-01

Outputting figure to mutsig2_images.part000000000006/ALPK1.3_3791_10000_0.5043_0.18_0.3346.png
                gene_name: ALPK1
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 61 percent done.
AKAP7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.128045e-02	ci left: 2.238545e-01	ci right 2.405018e-01	k: 2321	n:10000
Cons ci ratio: 1.176235e-03	ci left: 9.984243e-01	ci right 9.996546e-01	k: 9992	n:10000
KS ci ratio: 1.399944e-01	ci left: 6.758933e-02	ci right 7.786125e-02	k: 726	n:10000
AKAP7   10000 perm   2 sec   (6478 perm/sec)   p_kst 7.260000e-02   p_cons 9.992000e-01   p_joint 2.321000e-01

Joint ci ratio: 6.592444e-03	ci left: 9.432908e-01	ci right 9.495786e-01	k: 18930	n:20000
Cons ci ratio: 7.592946e-04	ci left: 9.988258e-01	ci right 9.996173e-01	k: 19986	n:20000
KS ci ratio: 9.783690e-02	ci left: 7.065356e-02	ci right 7.797078e-02	k: 1485	n:20000
AKAP7   20000 perm   3 sec   (5754 perm/sec)   p_kst 7.425000e-02   p_cons 9.993000e-01   p_joint 9.465000e-01

Outputting figure to mutsig2_images.part000000000006/AKAP7.2_1135_20000_0.07425_0.9993_0.9465.png
                gene_name: AKAP7
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.074 
        ci_ks_bounds_left: 0.071 
       ci_ks_bounds_right: 0.078 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 64 percent done.
AKR1B10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.382589e-01	ci left: 6.923436e-02	ci right 7.961519e-02	k: 743	n:10000
KS ci ratio: 4.874877e-02	ci left: 3.830114e-01	ci right 4.022512e-01	k: 3926	n:10000
AKR1B10   10000 perm   1 sec   (6706 perm/sec)   p_kst 3.926000e-01   p_cons 7.430000e-02   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 9.470588e-02	ci left: 7.515134e-02	ci right 8.267162e-02	k: 1577	n:20000
KS ci ratio: 3.439097e-02	ci left: 3.869696e-01	ci right 4.005613e-01	k: 7875	n:20000
AKR1B10   20000 perm   3 sec   (5902 perm/sec)   p_kst 3.937500e-01   p_cons 7.885000e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000006/AKR1B10.2_991_20000_0.39375_0.07885_1.png
                gene_name: AKR1B10
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.079 
      ci_cons_bounds_left: 0.075 
     ci_cons_bounds_right: 0.083 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
AKR1B15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.030980e-01	ci left: 1.197510e-01	ci right 1.328675e-01	k: 1262	n:10000
Cons ci ratio: 3.441962e-02	ci left: 5.548147e-01	ci right 5.743477e-01	k: 5646	n:10000
KS ci ratio: 1.403068e-01	ci left: 6.729912e-02	ci right 7.755164e-02	k: 723	n:10000
AKR1B15   10000 perm   1 sec   (6825 perm/sec)   p_kst 7.230000e-02   p_cons 5.646000e-01   p_joint 1.262000e-01

Joint ci ratio: 6.585329e-02	ci left: 1.455213e-01	ci right 1.554805e-01	k: 3009	n:20000
Cons ci ratio: 2.412277e-02	ci left: 5.621022e-01	ci right 5.758778e-01	k: 11380	n:20000
KS ci ratio: 9.958521e-02	ci left: 6.830848e-02	ci right 7.551658e-02	k: 1437	n:20000
AKR1B15   20000 perm   3 sec   (5914 perm/sec)   p_kst 7.185000e-02   p_cons 5.690000e-01   p_joint 1.504500e-01

Outputting figure to mutsig2_images.part000000000006/AKR1B15.2_1075_20000_0.07185_0.569_0.15045.png
                gene_name: AKR1B15
               theta_stop: 0.100 
                    nperm: 20000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.076 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 69 percent done.
ALDH16A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.268795e-02	ci left: 4.475994e-01	ci right 4.672254e-01	k: 4574	n:10000
Cons ci ratio: 6.827759e-02	ci left: 2.393626e-01	ci right 2.563846e-01	k: 2478	n:10000
KS ci ratio: 2.454149e-02	ci left: 7.094718e-01	ci right 7.272009e-01	k: 7184	n:10000
ALDH16A1   10000 perm   2 sec   (5830 perm/sec)   p_kst 7.184000e-01   p_cons 2.478000e-01   p_joint 4.574000e-01

Outputting figure to mutsig2_images.part000000000006/ALDH16A1.2_2477_10000_0.7184_0.2478_0.4574.png
                gene_name: ALDH16A1
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 72 percent done.
ALDH1B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.503264e-02	ci left: 5.460965e-01	ci right 5.656709e-01	k: 5559	n:10000
KS ci ratio: 6.427613e-02	ci left: 2.623061e-01	ci right 2.798274e-01	k: 2710	n:10000
ALDH1B1   10000 perm   2 sec   (6528 perm/sec)   p_kst 2.710000e-01   p_cons 5.559000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000006/ALDH1B1.2_1558_10000_0.271_0.5559_1.png
                gene_name: ALDH1B1
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
ALDH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.439761e-02	ci left: 3.324015e-01	ci right 3.510908e-01	k: 3417	n:10000
KS ci ratio: 2.417799e-02	ci left: 7.155281e-01	ci right 7.331411e-01	k: 7244	n:10000
ALDH2   10000 perm   2 sec   (6323 perm/sec)   p_kst 7.244000e-01   p_cons 3.417000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000006/ALDH2.2_1606_10000_0.7244_0.3417_1.png
                gene_name: ALDH2
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
ALDH3A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.744565e-02	ci left: 2.439092e-01	ci right 2.610352e-01	k: 2524	n:10000
Cons ci ratio: 1.510206e-02	ci left: 8.640678e-01	ci right 8.773155e-01	k: 8708	n:10000
KS ci ratio: 9.545513e-02	ci left: 1.373691e-01	ci right 1.512388e-01	k: 1442	n:10000
ALDH3A1   10000 perm   2 sec   (6444 perm/sec)   p_kst 1.442000e-01   p_cons 8.708000e-01   p_joint 2.524000e-01

Outputting figure to mutsig2_images.part000000000006/ALDH3A1.2_1402_10000_0.1442_0.8708_0.2524.png
                gene_name: ALDH3A1
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 81 percent done.
ALDH8A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.150142e-02	ci left: 9.153336e-01	ci right 9.260198e-01	k: 9208	n:10000
KS ci ratio: 1.004086e-02	ci left: 9.336122e-01	ci right 9.431305e-01	k: 9385	n:10000
ALDH8A1   10000 perm   2 sec   (6307 perm/sec)   p_kst 9.385000e-01   p_cons 9.208000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000006/ALDH8A1.2_1492_10000_0.9385_0.9208_1.png
                gene_name: ALDH8A1
               theta_stop: 0.012 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
ALDH9A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.495430e-02	ci left: 7.026103e-01	ci right 7.204663e-01	k: 7116	n:10000
KS ci ratio: 2.724192e-02	ci left: 6.650151e-01	ci right 6.834832e-01	k: 6743	n:10000
ALDH9A1   10000 perm   2 sec   (6047 perm/sec)   p_kst 6.743000e-01   p_cons 7.116000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000006/ALDH9A1.2_1601_10000_0.6743_0.7116_1.png
                gene_name: ALDH9A1
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
ALDOB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.849500e-02	ci left: 4.991503e-01	ci right 5.188444e-01	k: 5090	n:10000
KS ci ratio: 7.788726e-02	ci left: 1.941685e-01	ci right 2.100054e-01	k: 2020	n:10000
ALDOB   10000 perm   2 sec   (5077 perm/sec)   p_kst 2.020000e-01   p_cons 5.090000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000006/ALDOB.2_1127_10000_0.202_0.509_1.png
                gene_name: ALDOB
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
ALG5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.128802e-02	ci left: 6.011627e-01	ci right 6.203727e-01	k: 6108	n:10000
Cons ci ratio: 5.490924e-02	ci left: 3.282306e-01	ci right 3.468641e-01	k: 3375	n:10000
KS ci ratio: 4.834243e-02	ci left: 3.869933e-01	ci right 4.062670e-01	k: 3966	n:10000
ALG5   10000 perm   2 sec   (6031 perm/sec)   p_kst 3.966000e-01   p_cons 3.375000e-01   p_joint 6.108000e-01

Outputting figure to mutsig2_images.part000000000006/ALG5.2_1015_10000_0.3966_0.3375_0.6108.png
                gene_name: ALG5
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 92 percent done.
ALG6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.826467e-02	ci left: 5.021507e-01	ci right 5.218423e-01	k: 5120	n:10000
KS ci ratio: 4.800080e-02	ci left: 3.903785e-01	ci right 4.096798e-01	k: 4000	n:10000
ALG6   10000 perm   2 sec   (6009 perm/sec)   p_kst 4.000000e-01   p_cons 5.120000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000006/ALG6.2_1580_10000_0.4_0.512_1.png
                gene_name: ALG6
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
ALKBH3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.869303e-02	ci left: 6.416654e-01	ci right 6.604465e-01	k: 6511	n:10000
Cons ci ratio: 6.127603e-02	ci left: 2.814158e-01	ci right 2.993065e-01	k: 2903	n:10000
KS ci ratio: 5.599475e-02	ci left: 3.195935e-01	ci right 3.381063e-01	k: 3288	n:10000
ALKBH3   10000 perm   2 sec   (6523 perm/sec)   p_kst 3.288000e-01   p_cons 2.903000e-01   p_joint 6.511000e-01

Outputting figure to mutsig2_images.part000000000006/ALKBH3.2_897_10000_0.3288_0.2903_0.6511.png
                gene_name: ALKBH3
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 97 percent done.
ALKBH8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.522827e-02	ci left: 1.671068e-01	ci right 1.820833e-01	k: 1745	n:10000
Cons ci ratio: 6.499942e-02	ci left: 2.579524e-01	ci right 2.753837e-01	k: 2666	n:10000
KS ci ratio: 8.579437e-02	ci left: 1.652394e-01	ci right 1.801518e-01	k: 1726	n:10000
ALKBH8   10000 perm   2 sec   (6128 perm/sec)   p_kst 1.726000e-01   p_cons 2.666000e-01   p_joint 1.745000e-01

Outputting figure to mutsig2_images.part000000000006/ALKBH8.2_2039_10000_0.1726_0.2666_0.1745.png
                gene_name: ALKBH8
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000006
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 6 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1703>
Subject: Job 8003811: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1703>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000007> was used as the working directory.
Started at Sun Nov 11 15:03:18 2012
Results reported at Sun Nov 11 15:25:23 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000007.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000007.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 7  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000007.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1382.05 sec.
    Max Memory :      4753 MB
    Max Swap   :      7129 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
7
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 7
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 7: processing genes 544 - 633
Calculating significance of each gene.
Using projection method.
544	ALPK2	4.474821e-02
545	ALPK3	1
546	ALPL	5.276459e-01
547	ALPP	2.918950e-01
548	ALPPL2	6.624126e-01
549	ALS2	6.376257e-01
550	ALS2CL	9.523884e-01
551	ALS2CR11	4.546535e-01
552	ALS2CR12	1
553	ALS2CR4	2.502364e-01
554	ALS2CR8	8.009923e-01
555	ALX1	8.801467e-02
556	ALX3	6.505266e-01
557	ALX4	5.834560e-01
558	AMAC1	1
559	AMAC1L2	2.831653e-03
560	AMAC1L3	2.975511e-01
561	AMACR	5.456413e-01
562	AMBN	2.961608e-02
563	AMBP	6.166427e-01
564	AMBRA1	9.476133e-01
565	AMD1	4.998007e-01
566	AMDHD1	7.013748e-01
567	AMDHD2	5.416694e-01
568	AMELX	1.962038e-01
569	AMELY	3.319680e-01
570	AMFR	7.748892e-01
571	AMH	1
572	AMHR2	1.465882e-01
573	AMICA1	2.355484e-01
574	AMIGO1	9.002410e-01
575	AMIGO2	1
576	AMIGO3	1
577	AMMECR1	3.515747e-01
578	AMMECR1L	7.299569e-01
579	AMN	4.209111e-01
580	AMN1	1
581	AMOT	1.486229e-01
582	AMOTL1	7.064021e-01
583	AMOTL2	7.687972e-01
584	AMPD1	3.292813e-01
585	AMPD2	9.584552e-01
586	AMPD3	1.176004e-01
587	AMPH	4.699304e-02
588	AMT	1
589	AMTN	2.055403e-01
590	AMY2A	1
591	AMY2B	3.957300e-03
592	AMZ1	2.403383e-01
593	AMZ2	5.902120e-01
594	ANAPC1	9.918214e-01
595	ANAPC10	1
596	ANAPC11	1
597	ANAPC13	2.807127e-01
598	ANAPC16	1
599	ANAPC2	1
600	ANAPC4	6.917752e-01
601	ANAPC5	2.524099e-01
602	ANAPC7	1
603	ANG	1
604	ANGEL1	8.396655e-01
605	ANGEL2	1
606	ANGPT1	1
607	ANGPT2	5.312013e-01
608	ANGPT4	1.570875e-01
609	ANGPTL1	8.852913e-01
610	ANGPTL2	1
611	ANGPTL3	1.909431e-01
612	ANGPTL4	6.615932e-01
613	ANGPTL5	3.686692e-02
614	ANGPTL6	5.443615e-01
615	ANGPTL7	6.998264e-01
616	ANK1	9.894369e-01
617	ANK2	9.999998e-01
618	ANK3	1.000000e+00
619	ANKAR	8.615203e-01
620	ANKDD1A	8.719200e-01
621	ANKFN1	1.373287e-01
622	ANKFY1	9.189711e-01
623	ANKH	4.400825e-01
624	ANKHD1	1
625	ANKHD1-EIF4EBP3	7.911078e-01
626	ANKIB1	9.593699e-01
627	ANKK1	1
628	ANKLE1	1
629	ANKLE2	1.336302e-02
630	ANKMY1	1
631	ANKMY2	5.516469e-01
632	ANKRA2	6.394521e-01
633	ANKRD1	1
Done

Running MutSig 2:
Scatter job 7: processing genes 544 - 633
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ANK2
Processing conservation and coverage...
82% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.802049e-02	ci left: 6.524314e-01	ci right 6.710743e-01	k: 6618	n:10000
KS ci ratio: 1.103001e-02	ci left: 9.214164e-01	ci right 9.317334e-01	k: 9267	n:10000
ANK2   10000 perm   3 sec   (2932 perm/sec)   p_kst 9.267000e-01   p_cons 6.618000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000007/ANK2.26_12123_10000_0.9267_0.6618_1.png
                gene_name: ANK2
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 2 percent done.
ALPK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.096501e-02	ci left: 9.222420e-01	ci right 9.325074e-01	k: 9275	n:10000
Cons ci ratio: 2.236025e-02	ci left: 7.459413e-01	ci right 7.629103e-01	k: 7545	n:10000
KS ci ratio: 2.494822e-02	ci left: 7.027112e-01	ci right 7.205654e-01	k: 7117	n:10000
ALPK2   10000 perm   3 sec   (3629 perm/sec)   p_kst 7.117000e-01   p_cons 7.545000e-01   p_joint 9.275000e-01

Outputting figure to mutsig2_images.part000000000007/ALPK2.18_6561_10000_0.7117_0.7545_0.9275.png
                gene_name: ALPK2
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 4 percent done.
ANK3
Processing conservation and coverage...
73% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.990962e-02	ci left: 6.224605e-01	ci right 6.414626e-01	k: 6320	n:10000
KS ci ratio: 2.563048e-02	ci left: 6.914151e-01	ci right 7.094680e-01	k: 7005	n:10000
ANK3   10000 perm   3 sec   (3107 perm/sec)   p_kst 7.005000e-01   p_cons 6.320000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000007/ANK3.12_13639_10000_0.7005_0.632_1.png
                gene_name: ANK3
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 6 percent done.
AMPH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.646584e-02	ci left: 4.060162e-01	ci right 4.254329e-01	k: 4157	n:10000
Cons ci ratio: 2.823983e-02	ci left: 6.489092e-01	ci right 6.675985e-01	k: 6583	n:10000
KS ci ratio: 6.513262e-02	ci left: 2.571609e-01	ci right 2.745757e-01	k: 2658	n:10000
AMPH   10000 perm   2 sec   (4847 perm/sec)   p_kst 2.658000e-01   p_cons 6.583000e-01   p_joint 4.157000e-01

Outputting figure to mutsig2_images.part000000000007/AMPH.11_2172_10000_0.2658_0.6583_0.4157.png
                gene_name: AMPH
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 8 percent done.
ALS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.031447e-01	ci left: 1.196532e-01	ci right 1.327654e-01	k: 1261	n:10000
Cons ci ratio: 7.649036e-02	ci left: 1.999823e-01	ci right 2.159882e-01	k: 2079	n:10000
KS ci ratio: 1.018556e-01	ci left: 1.223911e-01	ci right 1.356258e-01	k: 1289	n:10000
ALS2   10000 perm   2 sec   (4468 perm/sec)   p_kst 1.289000e-01   p_cons 2.079000e-01   p_joint 1.261000e-01

Joint ci ratio: 8.210895e-02	ci left: 9.808407e-02	ci right 1.065320e-01	k: 2045	n:20000
Cons ci ratio: 5.506675e-02	ci left: 1.965533e-01	ci right 2.077334e-01	k: 4042	n:20000
KS ci ratio: 7.202407e-02	ci left: 1.243344e-01	ci right 1.336738e-01	k: 2579	n:20000
ALS2   20000 perm   5 sec   (4089 perm/sec)   p_kst 1.289500e-01   p_cons 2.021000e-01   p_joint 1.022500e-01

Outputting figure to mutsig2_images.part000000000007/ALS2.9_5184_20000_0.12895_0.2021_0.10225.png
                gene_name: ALS2
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.098 
    ci_joint_bounds_right: 0.11 

Current progress: 10 percent done.
ANKFN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.156933e-02	ci left: 7.591946e-01	ci right 7.758493e-01	k: 7676	n:10000
Cons ci ratio: 1.370713e-02	ci left: 8.848302e-01	ci right 8.971410e-01	k: 8911	n:10000
KS ci ratio: 3.595726e-02	ci left: 5.331752e-01	ci right 5.527998e-01	k: 5430	n:10000
ANKFN1   10000 perm   2 sec   (5567 perm/sec)   p_kst 5.430000e-01   p_cons 8.911000e-01   p_joint 7.676000e-01

Outputting figure to mutsig2_images.part000000000007/ANKFN1.9_2360_10000_0.543_0.8911_0.7676.png
                gene_name: ANKFN1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 12 percent done.
ANKHD1-EIF4EBP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.569156e-02	ci left: 6.904069e-01	ci right 7.084768e-01	k: 6995	n:10000
Cons ci ratio: 4.595323e-02	ci left: 4.113971e-01	ci right 4.308489e-01	k: 4211	n:10000
KS ci ratio: 1.150929e-02	ci left: 9.152306e-01	ci right 9.259229e-01	k: 9207	n:10000
ANKHD1-EIF4EBP3   10000 perm   3 sec   (3853 perm/sec)   p_kst 9.207000e-01   p_cons 4.211000e-01   p_joint 6.995000e-01

Outputting figure to mutsig2_images.part000000000007/ANKHD1-EIF4EBP3.9_7998_10000_0.9207_0.4211_0.6995.png
                gene_name: ANKHD1-EIF4EBP3
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 14 percent done.
ANKLE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.665833e-02	ci left: 5.235635e-01	ci right 5.432170e-01	k: 5334	n:10000
Cons ci ratio: 4.490424e-02	ci left: 4.226610e-01	ci right 4.421784e-01	k: 4324	n:10000
KS ci ratio: 3.596451e-02	ci left: 5.330750e-01	ci right 5.527000e-01	k: 5429	n:10000
ANKLE2   10000 perm   2 sec   (5030 perm/sec)   p_kst 5.429000e-01   p_cons 4.324000e-01   p_joint 5.334000e-01

Outputting figure to mutsig2_images.part000000000007/ANKLE2.9_2869_10000_0.5429_0.4324_0.5334.png
                gene_name: ANKLE2
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 16 percent done.
ALPK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.673464e-02	ci left: 4.032266e-01	ci right 4.226242e-01	k: 4129	n:10000
Cons ci ratio: 6.145491e-02	ci left: 2.802271e-01	ci right 2.980959e-01	k: 2891	n:10000
KS ci ratio: 4.529048e-02	ci left: 4.184738e-01	ci right 4.379680e-01	k: 4282	n:10000
ALPK3   10000 perm   2 sec   (4516 perm/sec)   p_kst 4.282000e-01   p_cons 2.891000e-01   p_joint 4.129000e-01

Outputting figure to mutsig2_images.part000000000007/ALPK3.8_5780_10000_0.4282_0.2891_0.4129.png
                gene_name: ALPK3
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 18 percent done.
AMHR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.116258e-02	ci left: 3.603273e-01	ci right 3.793486e-01	k: 3698	n:10000
Cons ci ratio: 1.189885e-01	ci left: 9.204578e-02	ci right 1.037896e-01	k: 978	n:10000
KS ci ratio: 2.904114e-02	ci left: 6.361335e-01	ci right 6.549816e-01	k: 6456	n:10000
AMHR2   10000 perm   2 sec   (5788 perm/sec)   p_kst 6.456000e-01   p_cons 9.780000e-02   p_joint 3.698000e-01

Joint ci ratio: 3.813383e-02	ci left: 3.390567e-01	ci right 3.522881e-01	k: 6913	n:20000
Cons ci ratio: 8.219848e-02	ci left: 9.788774e-02	ci right 1.063283e-01	k: 2041	n:20000
KS ci ratio: 2.054056e-02	ci left: 6.388246e-01	ci right 6.521331e-01	k: 12910	n:20000
AMHR2   20000 perm   4 sec   (5175 perm/sec)   p_kst 6.455000e-01   p_cons 1.020500e-01   p_joint 3.456500e-01

Outputting figure to mutsig2_images.part000000000007/AMHR2.7_1766_20000_0.6455_0.10205_0.34565.png
                gene_name: AMHR2
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.098 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 20 percent done.
AMPD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.863623e-02	ci left: 6.425708e-01	ci right 6.613406e-01	k: 6520	n:10000
Cons ci ratio: 6.620037e-02	ci left: 2.509293e-01	ci right 2.682110e-01	k: 2595	n:10000
KS ci ratio: 1.784267e-02	ci left: 8.208650e-01	ci right 8.357433e-01	k: 8284	n:10000
AMPD3   10000 perm   2 sec   (5441 perm/sec)   p_kst 8.284000e-01   p_cons 2.595000e-01   p_joint 6.520000e-01

Outputting figure to mutsig2_images.part000000000007/AMPD3.7_2411_10000_0.8284_0.2595_0.652.png
                gene_name: AMPD3
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 22 percent done.
AMY2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.664856e-02	ci left: 6.746845e-01	ci right 6.930083e-01	k: 6839	n:10000
Cons ci ratio: 5.009327e-02	ci left: 3.701742e-01	ci right 3.892959e-01	k: 3797	n:10000
KS ci ratio: 3.240467e-02	ci left: 5.842987e-01	ci right 6.036465e-01	k: 5940	n:10000
AMY2B   10000 perm   2 sec   (5496 perm/sec)   p_kst 5.940000e-01   p_cons 3.797000e-01   p_joint 6.839000e-01

Outputting figure to mutsig2_images.part000000000007/AMY2B.7_1576_10000_0.594_0.3797_0.6839.png
                gene_name: AMY2B
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 24 percent done.
AMAC1L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.814227e-01	ci left: 4.054168e-02	ci right 4.872625e-02	k: 445	n:10000
Cons ci ratio: 1.969557e-01	ci left: 3.433772e-02	ci right 4.193438e-02	k: 380	n:10000
KS ci ratio: 9.191022e-02	ci left: 1.467809e-01	ci right 1.610214e-01	k: 1538	n:10000
AMAC1L2   10000 perm   2 sec   (6079 perm/sec)   p_kst 1.538000e-01   p_cons 3.800000e-02   p_joint 4.450000e-02

Joint ci ratio: 1.129508e-01	ci left: 5.358313e-02	ci right 6.004647e-02	k: 1135	n:20000
Cons ci ratio: 1.389877e-01	ci left: 3.558584e-02	ci right 4.094947e-02	k: 764	n:20000
KS ci ratio: 6.463191e-02	ci left: 1.503058e-01	ci right 1.603947e-01	k: 3106	n:20000
AMAC1L2   20000 perm   4 sec   (5409 perm/sec)   p_kst 1.553000e-01   p_cons 3.820000e-02   p_joint 5.675000e-02

Joint ci ratio: 1.065093e-01	ci left: 4.089459e-02	ci right 4.552773e-02	k: 1295	n:30000
Cons ci ratio: 1.136642e-01	ci left: 3.596188e-02	ci right 4.032815e-02	k: 1143	n:30000
KS ci ratio: 5.405142e-02	ci left: 1.451198e-01	ci right 1.532149e-01	k: 4474	n:30000
AMAC1L2   30000 perm   6 sec   (5142 perm/sec)   p_kst 1.491333e-01   p_cons 3.810000e-02   p_joint 4.316667e-02

Joint ci ratio: 9.125109e-02	ci left: 4.208413e-02	ci right 4.613239e-02	k: 1763	n:40000
Cons ci ratio: 9.831371e-02	ci left: 3.634267e-02	ci right 4.012474e-02	k: 1528	n:40000
KS ci ratio: 4.639796e-02	ci left: 1.479003e-01	ci right 1.549504e-01	k: 6056	n:40000
AMAC1L2   40000 perm   8 sec   (4965 perm/sec)   p_kst 1.514000e-01   p_cons 3.820000e-02   p_joint 4.407500e-02

Outputting figure to mutsig2_images.part000000000007/AMAC1L2.6_1021_40000_0.1514_0.0382_0.044075.png
                gene_name: AMAC1L2
               theta_stop: 0.098 
                    nperm: 40000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.038 
      ci_cons_bounds_left: 0.036 
     ci_cons_bounds_right: 0.040 
                  p_joint: 0.044 
     ci_joint_bounds_left: 0.042 
    ci_joint_bounds_right: 0.046 

Current progress: 26 percent done.
ANAPC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.973073e-02	ci left: 4.833543e-01	ci right 5.030497e-01	k: 4932	n:10000
Cons ci ratio: 1.830504e-02	ci left: 8.133433e-01	ci right 8.284693e-01	k: 8210	n:10000
KS ci ratio: 6.114250e-02	ci left: 2.823074e-01	ci right 3.002143e-01	k: 2912	n:10000
ANAPC1   10000 perm   2 sec   (4225 perm/sec)   p_kst 2.912000e-01   p_cons 8.210000e-01   p_joint 4.932000e-01

Outputting figure to mutsig2_images.part000000000007/ANAPC1.6_6023_10000_0.2912_0.821_0.4932.png
                gene_name: ANAPC1
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 28 percent done.
ANK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.021124e-02	ci left: 7.818830e-01	ci right 7.979478e-01	k: 7900	n:10000
Cons ci ratio: 2.290325e-02	ci left: 7.368421e-01	ci right 7.540147e-01	k: 7455	n:10000
KS ci ratio: 2.688299e-02	ci left: 6.708565e-01	ci right 6.892385e-01	k: 6801	n:10000
ANK1   10000 perm   2 sec   (4174 perm/sec)   p_kst 6.801000e-01   p_cons 7.455000e-01   p_joint 7.900000e-01

Outputting figure to mutsig2_images.part000000000007/ANK1.6_6298_10000_0.6801_0.7455_0.79.png
                gene_name: ANK1
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 30 percent done.
ANKIB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.226054e-02	ci left: 4.525901e-01	ci right 4.722318e-01	k: 4624	n:10000
KS ci ratio: 1.952111e-02	ci left: 7.933421e-01	ci right 8.090821e-01	k: 8013	n:10000
ANKIB1   10000 perm   2 sec   (5032 perm/sec)   p_kst 8.013000e-01   p_cons 4.624000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000007/ANKIB1.6_3346_10000_0.8013_0.4624_1.png
                gene_name: ANKIB1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 32 percent done.
ALX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.663840e-02	ci left: 4.042228e-01	ci right 4.236274e-01	k: 4139	n:10000
Cons ci ratio: 1.121293e-01	ci left: 1.027615e-01	ci right 1.150674e-01	k: 1088	n:10000
KS ci ratio: 8.337419e-03	ci left: 9.526301e-01	ci right 9.607012e-01	k: 9568	n:10000
ALX1   10000 perm   2 sec   (6402 perm/sec)   p_kst 9.568000e-01   p_cons 1.088000e-01   p_joint 4.139000e-01

Joint ci ratio: 3.859775e-02	ci left: 3.336325e-01	ci right 3.468139e-01	k: 6804	n:20000
Cons ci ratio: 7.874221e-02	ci left: 1.058921e-01	ci right 1.146216e-01	k: 2204	n:20000
KS ci ratio: 5.828263e-03	ci left: 9.548182e-01	ci right 9.604477e-01	k: 19154	n:20000
ALX1   20000 perm   4 sec   (5696 perm/sec)   p_kst 9.577000e-01   p_cons 1.102000e-01   p_joint 3.402000e-01

Outputting figure to mutsig2_images.part000000000007/ALX1.5_997_20000_0.9577_0.1102_0.3402.png
                gene_name: ALX1
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 34 percent done.
AMBN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.540245e-02	ci left: 8.594729e-01	ci right 8.729130e-01	k: 8663	n:10000
Cons ci ratio: 1.168940e-02	ci left: 9.128618e-01	ci right 9.236931e-01	k: 9184	n:10000
KS ci ratio: 2.425064e-02	ci left: 7.143166e-01	ci right 7.319532e-01	k: 7232	n:10000
AMBN   10000 perm   2 sec   (4168 perm/sec)   p_kst 7.232000e-01   p_cons 9.184000e-01   p_joint 8.663000e-01

Outputting figure to mutsig2_images.part000000000007/AMBN.5_1396_10000_0.7232_0.9184_0.8663.png
                gene_name: AMBN
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 36 percent done.
ANAPC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.439601e-02	ci left: 7.118940e-01	ci right 7.295772e-01	k: 7208	n:10000
Cons ci ratio: 5.219901e-02	ci left: 3.510811e-01	ci right 3.700002e-01	k: 3605	n:10000
KS ci ratio: 8.536721e-03	ci left: 9.505438e-01	ci right 9.587887e-01	k: 9548	n:10000
ANAPC5   10000 perm   2 sec   (4301 perm/sec)   p_kst 9.548000e-01   p_cons 3.605000e-01   p_joint 7.208000e-01

Outputting figure to mutsig2_images.part000000000007/ANAPC5.5_2336_10000_0.9548_0.3605_0.7208.png
                gene_name: ANAPC5
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 38 percent done.
AMOT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.775808e-02	ci left: 6.566587e-01	ci right 6.752445e-01	k: 6660	n:10000
KS ci ratio: 3.095346e-02	ci left: 6.062845e-01	ci right 6.254480e-01	k: 6159	n:10000
AMOT   10000 perm   2 sec   (5511 perm/sec)   p_kst 6.159000e-01   p_cons 6.660000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000007/AMOT.4_3299_10000_0.6159_0.666_1.png
                gene_name: AMOT
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 40 percent done.
AMPD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.484493e-02	ci left: 7.044263e-01	ci right 7.222493e-01	k: 7134	n:10000
Cons ci ratio: 1.148566e-02	ci left: 9.155397e-01	ci right 9.262136e-01	k: 9210	n:10000
KS ci ratio: 4.819129e-02	ci left: 3.884867e-01	ci right 4.077727e-01	k: 3981	n:10000
AMPD1   10000 perm   2 sec   (5627 perm/sec)   p_kst 3.981000e-01   p_cons 9.210000e-01   p_joint 7.134000e-01

Outputting figure to mutsig2_images.part000000000007/AMPD1.4_2407_10000_0.3981_0.921_0.7134.png
                gene_name: AMPD1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 42 percent done.
ANGPT4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.643706e-02	ci left: 8.433592e-01	ci right 8.574360e-01	k: 8505	n:10000
KS ci ratio: 1.547546e-02	ci left: 8.583501e-01	ci right 8.718364e-01	k: 8652	n:10000
ANGPT4   10000 perm   2 sec   (5775 perm/sec)   p_kst 8.652000e-01   p_cons 8.505000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000007/ANGPT4.4_1548_10000_0.8652_0.8505_1.png
                gene_name: ANGPT4
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 44 percent done.
ANGPTL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.384612e-02	ci left: 3.369706e-01	ci right 3.557190e-01	k: 3463	n:10000
Cons ci ratio: 7.452509e-03	ci left: 9.614198e-01	ci right 9.687060e-01	k: 9652	n:10000
KS ci ratio: 9.850717e-02	ci left: 1.299255e-01	ci right 1.434869e-01	k: 1366	n:10000
ANGPTL5   10000 perm   2 sec   (5998 perm/sec)   p_kst 1.366000e-01   p_cons 9.652000e-01   p_joint 3.463000e-01

Outputting figure to mutsig2_images.part000000000007/ANGPTL5.4_1199_10000_0.1366_0.9652_0.3463.png
                gene_name: ANGPTL5
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 46 percent done.
ALPL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.563461e-03	ci left: 9.899424e-01	ci right 9.935624e-01	k: 9919	n:10000
Cons ci ratio: 2.238439e-02	ci left: 7.455367e-01	ci right 7.625150e-01	k: 7541	n:10000
KS ci ratio: 1.859697e-02	ci left: 8.085685e-01	ci right 8.238468e-01	k: 8163	n:10000
ALPL   10000 perm   2 sec   (6650 perm/sec)   p_kst 8.163000e-01   p_cons 7.541000e-01   p_joint 9.919000e-01

Outputting figure to mutsig2_images.part000000000007/ALPL.3_1619_10000_0.8163_0.7541_0.9919.png
                gene_name: ALPL
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 48 percent done.
ALPP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.520741e-01	ci left: 5.754436e-02	ci right 6.711256e-02	k: 622	n:10000
Cons ci ratio: 4.856532e-02	ci left: 3.848032e-01	ci right 4.040584e-01	k: 3944	n:10000
KS ci ratio: 2.669889e-01	ci left: 1.827990e-02	ci right 2.400381e-02	k: 210	n:10000
ALPP   10000 perm   2 sec   (4680 perm/sec)   p_kst 2.100000e-02   p_cons 3.944000e-01   p_joint 6.220000e-02

Joint ci ratio: 1.480826e-01	ci left: 3.133844e-02	ci right 3.639826e-02	k: 676	n:20000
Cons ci ratio: 3.439457e-02	ci left: 3.869198e-01	ci right 4.005112e-01	k: 7874	n:20000
KS ci ratio: 1.913577e-01	ci left: 1.858107e-02	ci right 2.256002e-02	k: 410	n:20000
ALPP   20000 perm   4 sec   (4597 perm/sec)   p_kst 2.050000e-02   p_cons 3.937000e-01   p_joint 3.380000e-02

Joint ci ratio: 1.018720e-01	ci left: 4.463242e-02	ci right 4.945578e-02	k: 1410	n:30000
Cons ci ratio: 2.739040e-02	ci left: 4.001363e-01	ci right 4.112820e-01	k: 12171	n:30000
KS ci ratio: 1.452567e-01	ci left: 2.197614e-02	ci right 2.545027e-02	k: 710	n:30000
ALPP   30000 perm   7 sec   (4525 perm/sec)   p_kst 2.366667e-02   p_cons 4.057000e-01   p_joint 4.700000e-02

Joint ci ratio: 7.338977e-02	ci left: 6.412651e-02	ci right 6.903664e-02	k: 2662	n:40000
Cons ci ratio: 2.378152e-02	ci left: 3.996599e-01	ci right 4.093039e-01	k: 16179	n:40000
KS ci ratio: 1.277422e-01	ci left: 2.152896e-02	ci right 2.449084e-02	k: 919	n:40000
ALPP   40000 perm   9 sec   (4501 perm/sec)   p_kst 2.297500e-02   p_cons 4.044750e-01   p_joint 6.655000e-02

Joint ci ratio: 7.343214e-02	ci left: 5.193658e-02	ci right 5.591541e-02	k: 2695	n:50000
Cons ci ratio: 2.125317e-02	ci left: 4.005730e-01	ci right 4.091980e-01	k: 20244	n:50000
KS ci ratio: 1.148713e-01	ci left: 2.145110e-02	ci right 2.408471e-02	k: 1137	n:50000
ALPP   50000 perm   11 sec   (4454 perm/sec)   p_kst 2.274000e-02   p_cons 4.048800e-01   p_joint 5.390000e-02

Joint ci ratio: 6.687264e-02	ci left: 5.235241e-02	ci right 5.599086e-02	k: 3249	n:60000
Cons ci ratio: 1.939200e-02	ci left: 4.011849e-01	ci right 4.090576e-01	k: 24307	n:60000
KS ci ratio: 1.052817e-01	ci left: 2.139310e-02	ci right 2.378672e-02	k: 1354	n:60000
ALPP   60000 perm   14 sec   (4403 perm/sec)   p_kst 2.256667e-02   p_cons 4.051167e-01   p_joint 5.415000e-02

Joint ci ratio: 7.479576e-02	ci left: 3.634314e-02	ci right 3.918106e-02	k: 2642	n:70000
Cons ci ratio: 1.793719e-02	ci left: 4.019167e-01	ci right 4.092054e-01	k: 28389	n:70000
KS ci ratio: 1.018718e-01	ci left: 1.965803e-02	ci right 2.178196e-02	k: 1449	n:70000
ALPP   70000 perm   16 sec   (4342 perm/sec)   p_kst 2.070000e-02   p_cons 4.055571e-01   p_joint 3.774286e-02

Joint ci ratio: 7.387333e-02	ci left: 3.274256e-02	ci right 3.526638e-02	k: 2719	n:80000
Cons ci ratio: 1.678379e-02	ci left: 4.020075e-01	ci right 4.088243e-01	k: 32433	n:80000
KS ci ratio: 9.541425e-02	ci left: 1.967572e-02	ci right 2.165926e-02	k: 1652	n:80000
ALPP   80000 perm   19 sec   (4278 perm/sec)   p_kst 2.065000e-02   p_cons 4.054125e-01   p_joint 3.398750e-02

Outputting figure to mutsig2_images.part000000000007/ALPP.3_1652_80000_0.02065_0.40541_0.033987.png
                gene_name: ALPP
               theta_stop: 0.095 
                    nperm: 80000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.022 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.034 
     ci_joint_bounds_left: 0.033 
    ci_joint_bounds_right: 0.035 

Current progress: 50 percent done.
ALS2CR11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.810553e-02	ci left: 8.165953e-01	ci right 8.316154e-01	k: 8242	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
ALS2CR11   10000 perm   2 sec   (4901 perm/sec)   p_kst 1   p_cons 8.242000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000007/ALS2CR11.3_5674_10000_1_0.8242_1.png
                gene_name: ALS2CR11
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 52 percent done.
ALX4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.880608e-01	ci left: 8.143597e-03	ci right 1.214950e-02	k: 100	n:10000
Cons ci ratio: 7.829804e-01	ci left: 1.538312e-03	ci right 3.568919e-03	k: 24	n:10000
KS ci ratio: 1.527287e-01	ci left: 5.706232e-02	ci right 6.659491e-02	k: 617	n:10000
ALX4   10000 perm   2 sec   (6273 perm/sec)   p_kst 6.170000e-02   p_cons 2.400000e-03   p_joint 1.000000e-02

Joint ci ratio: 3.387667e-01	ci left: 5.525009e-03	ci right 7.821951e-03	k: 132	n:20000
Cons ci ratio: 5.971366e-01	ci left: 1.513902e-03	ci right 2.837541e-03	k: 42	n:20000
KS ci ratio: 1.078584e-01	ci left: 5.859920e-02	ci right 6.532884e-02	k: 1238	n:20000
ALX4   20000 perm   4 sec   (5605 perm/sec)   p_kst 6.190000e-02   p_cons 2.100000e-03   p_joint 6.600000e-03

Joint ci ratio: 1.913204e-01	ci left: 1.247871e-02	ci right 1.515000e-02	k: 413	n:30000
Cons ci ratio: 5.973559e-01	ci left: 1.009177e-03	ci right 1.891927e-03	k: 42	n:30000
KS ci ratio: 8.820587e-02	ci left: 5.903581e-02	ci right 6.451610e-02	k: 1852	n:30000
ALX4   30000 perm   6 sec   (5328 perm/sec)   p_kst 6.173333e-02   p_cons 1.400000e-03   p_joint 1.376667e-02

Joint ci ratio: 2.321912e-01	ci left: 6.253518e-03	ci right 7.919248e-03	k: 282	n:40000
Cons ci ratio: 5.143415e-01	ci left: 1.079454e-03	ci right 1.845864e-03	k: 57	n:40000
KS ci ratio: 7.673143e-02	ci left: 5.889498e-02	ci right 6.361896e-02	k: 2449	n:40000
ALX4   40000 perm   8 sec   (5152 perm/sec)   p_kst 6.122500e-02   p_cons 1.425000e-03   p_joint 7.050000e-03

Joint ci ratio: 2.838430e-01	ci left: 3.261100e-03	ci right 4.357749e-03	k: 189	n:50000
Cons ci ratio: 4.681969e-01	ci left: 1.073876e-03	ci right 1.746158e-03	k: 69	n:50000
KS ci ratio: 6.875647e-02	ci left: 5.893742e-02	ci right 6.315372e-02	k: 3051	n:50000
ALX4   50000 perm   10 sec   (5014 perm/sec)   p_kst 6.102000e-02   p_cons 1.380000e-03   p_joint 3.780000e-03

Joint ci ratio: 2.568604e-01	ci left: 3.370270e-03	ci right 4.378653e-03	k: 231	n:60000
Cons ci ratio: 4.223979e-01	ci left: 1.131735e-03	ci right 1.751437e-03	k: 85	n:60000
KS ci ratio: 6.225513e-02	ci left: 6.005043e-02	ci right 6.392541e-02	k: 3718	n:60000
ALX4   60000 perm   12 sec   (4908 perm/sec)   p_kst 6.196667e-02   p_cons 1.416667e-03   p_joint 3.850000e-03

Joint ci ratio: 1.752095e-01	ci left: 6.477708e-03	ci right 7.735099e-03	k: 496	n:70000
Cons ci ratio: 3.998060e-01	ci left: 1.098144e-03	ci right 1.658786e-03	k: 95	n:70000
KS ci ratio: 5.755113e-02	ci left: 6.036550e-02	ci right 6.395662e-02	k: 4350	n:70000
ALX4   70000 perm   15 sec   (4807 perm/sec)   p_kst 6.214286e-02   p_cons 1.357143e-03   p_joint 7.085714e-03

Joint ci ratio: 1.673404e-01	ci left: 6.242217e-03	ci right 7.393986e-03	k: 544	n:80000
Cons ci ratio: 3.718094e-01	ci left: 1.130214e-03	ci right 1.657013e-03	k: 110	n:80000
KS ci ratio: 5.399981e-02	ci left: 6.012875e-02	ci right 6.347812e-02	k: 4943	n:80000
ALX4   80000 perm   17 sec   (4719 perm/sec)   p_kst 6.178750e-02   p_cons 1.375000e-03   p_joint 6.800000e-03

Joint ci ratio: 1.629514e-01	ci left: 5.868101e-03	ci right 6.919651e-03	k: 574	n:90000
Cons ci ratio: 3.606266e-01	ci left: 1.075250e-03	ci right 1.557815e-03	k: 117	n:90000
KS ci ratio: 5.096527e-02	ci left: 6.010370e-02	ci right 6.325796e-02	k: 5550	n:90000
ALX4   90000 perm   19 sec   (4633 perm/sec)   p_kst 6.166667e-02   p_cons 1.300000e-03   p_joint 6.377778e-03

Joint ci ratio: 1.087343e-01	ci left: 1.213190e-02	ci right 1.353656e-02	k: 1282	n:100000
Cons ci ratio: 3.409652e-01	ci left: 1.095400e-03	ci right 1.554310e-03	k: 131	n:100000
KS ci ratio: 4.844533e-02	ci left: 5.995939e-02	ci right 6.294611e-02	k: 6144	n:100000
ALX4   100000 perm   22 sec   (4543 perm/sec)   p_kst 6.144000e-02   p_cons 1.310000e-03   p_joint 1.282000e-02

Joint ci ratio: 1.338545e-01	ci left: 7.218275e-03	ci right 8.262476e-03	k: 850	n:110000
Cons ci ratio: 3.287452e-01	ci left: 1.079085e-03	ci right 1.511535e-03	k: 141	n:110000
KS ci ratio: 4.628758e-02	ci left: 5.979055e-02	ci right 6.263264e-02	k: 6732	n:110000
ALX4   110000 perm   25 sec   (4460 perm/sec)   p_kst 6.120000e-02   p_cons 1.281818e-03   p_joint 7.727273e-03

Joint ci ratio: 1.303944e-01	ci left: 6.987360e-03	ci right 7.970000e-03	k: 896	n:120000
Cons ci ratio: 3.177512e-01	ci left: 1.065734e-03	ci right 1.475646e-03	k: 151	n:120000
KS ci ratio: 4.423076e-02	ci left: 6.007293e-02	ci right 6.279831e-02	k: 7371	n:120000
ALX4   120000 perm   27 sec   (4380 perm/sec)   p_kst 6.142500e-02   p_cons 1.258333e-03   p_joint 7.466667e-03

Joint ci ratio: 1.231732e-01	ci left: 7.254367e-03	ci right 8.213940e-03	k: 1004	n:130000
Cons ci ratio: 3.059063e-01	ci left: 1.068841e-03	ci right 1.461641e-03	k: 163	n:130000
KS ci ratio: 4.236945e-02	ci left: 6.046654e-02	ci right 6.309151e-02	k: 8030	n:130000
ALX4   130000 perm   30 sec   (4305 perm/sec)   p_kst 6.176923e-02   p_cons 1.253846e-03   p_joint 7.723077e-03

Joint ci ratio: 1.192664e-01	ci left: 7.200247e-03	ci right 8.120320e-03	k: 1071	n:140000
Cons ci ratio: 2.978468e-01	ci left: 1.051912e-03	ci right 1.426380e-03	k: 172	n:140000
KS ci ratio: 4.088563e-02	ci left: 6.035318e-02	ci right 6.287930e-02	k: 8625	n:140000
ALX4   140000 perm   33 sec   (4233 perm/sec)   p_kst 6.160714e-02   p_cons 1.228571e-03   p_joint 7.650000e-03

Joint ci ratio: 9.378295e-02	ci left: 1.097308e-02	ci right 1.205926e-02	k: 1726	n:150000
Cons ci ratio: 2.872491e-01	ci left: 1.062094e-03	ci right 1.424294e-03	k: 185	n:150000
KS ci ratio: 3.947912e-02	ci left: 6.045449e-02	ci right 6.289582e-02	k: 9250	n:150000
ALX4   150000 perm   36 sec   (4163 perm/sec)   p_kst 6.166667e-02   p_cons 1.233333e-03   p_joint 1.150667e-02

Joint ci ratio: 1.021569e-01	ci left: 8.652680e-03	ci right 9.590237e-03	k: 1458	n:160000
Cons ci ratio: 2.777077e-01	ci left: 1.071210e-03	ci right 1.422264e-03	k: 198	n:160000
KS ci ratio: 3.815290e-02	ci left: 6.071168e-02	ci right 6.307922e-02	k: 9902	n:160000
ALX4   160000 perm   39 sec   (4095 perm/sec)   p_kst 6.188750e-02   p_cons 1.237500e-03   p_joint 9.112500e-03

Joint ci ratio: 1.069046e-01	ci left: 7.427365e-03	ci right 8.271902e-03	k: 1333	n:170000
Cons ci ratio: 2.665519e-01	ci left: 1.101380e-03	ci right 1.445402e-03	k: 215	n:170000
KS ci ratio: 3.704367e-02	ci left: 6.065408e-02	ci right 6.294913e-02	k: 10505	n:170000
ALX4   170000 perm   42 sec   (4034 perm/sec)   p_kst 6.179412e-02   p_cons 1.264706e-03   p_joint 7.841176e-03

Joint ci ratio: 1.060112e-01	ci left: 7.139052e-03	ci right 7.943597e-03	k: 1356	n:180000
Cons ci ratio: 2.583112e-01	ci left: 1.112856e-03	ci right 1.447983e-03	k: 229	n:180000
KS ci ratio: 3.605182e-02	ci left: 6.052113e-02	ci right 6.274857e-02	k: 11093	n:180000
ALX4   180000 perm   45 sec   (3973 perm/sec)   p_kst 6.162778e-02   p_cons 1.272222e-03   p_joint 7.533333e-03

Joint ci ratio: 1.033799e-01	ci left: 7.122083e-03	ci right 7.903582e-03	k: 1426	n:190000
Cons ci ratio: 2.518260e-01	ci left: 1.113405e-03	ci right 1.438960e-03	k: 241	n:190000
KS ci ratio: 3.509560e-02	ci left: 6.053343e-02	ci right 6.270102e-02	k: 11706	n:190000
ALX4   190000 perm   49 sec   (3912 perm/sec)   p_kst 6.161053e-02   p_cons 1.268421e-03   p_joint 7.505263e-03

Joint ci ratio: 1.009692e-01	ci left: 7.102159e-03	ci right 7.862221e-03	k: 1495	n:200000
Cons ci ratio: 2.462917e-01	ci left: 1.109302e-03	ci right 1.425438e-03	k: 252	n:200000
KS ci ratio: 3.418798e-02	ci left: 6.062456e-02	ci right 6.273817e-02	k: 12335	n:200000
ALX4   200000 perm   52 sec   (3851 perm/sec)   p_kst 6.167500e-02   p_cons 1.260000e-03   p_joint 7.475000e-03

Joint ci ratio: 9.824638e-02	ci left: 7.154006e-03	ci right 7.897780e-03	k: 1579	n:210000
Cons ci ratio: 2.401978e-01	ci left: 1.114611e-03	ci right 1.423230e-03	k: 265	n:210000
KS ci ratio: 3.332541e-02	ci left: 6.078326e-02	ci right 6.284791e-02	k: 12980	n:210000
ALX4   210000 perm   55 sec   (3793 perm/sec)   p_kst 6.180952e-02   p_cons 1.261905e-03   p_joint 7.519048e-03

Joint ci ratio: 9.581965e-02	ci left: 7.188077e-03	ci right 7.915898e-03	k: 1660	n:220000
Cons ci ratio: 2.349569e-01	ci left: 1.115246e-03	ci right 1.416324e-03	k: 277	n:220000
KS ci ratio: 3.250465e-02	ci left: 6.100031e-02	ci right 6.302034e-02	k: 13641	n:220000
ALX4   220000 perm   59 sec   (3737 perm/sec)   p_kst 6.200455e-02   p_cons 1.259091e-03   p_joint 7.545455e-03

Joint ci ratio: 9.356429e-02	ci left: 7.219391e-03	ci right 7.932234e-03	k: 1741	n:230000
Cons ci ratio: 2.284724e-01	ci left: 1.132286e-03	ci right 1.428339e-03	k: 293	n:230000
KS ci ratio: 3.181765e-02	ci left: 6.092285e-02	ci right 6.289690e-02	k: 14238	n:230000
ALX4   230000 perm   62 sec   (3685 perm/sec)   p_kst 6.190435e-02   p_cons 1.273913e-03   p_joint 7.569565e-03

Joint ci ratio: 9.191942e-02	ci left: 7.174987e-03	ci right 7.870320e-03	k: 1804	n:240000
Cons ci ratio: 2.254282e-01	ci left: 1.116544e-03	ci right 1.404051e-03	k: 301	n:240000
KS ci ratio: 3.119822e-02	ci left: 6.075714e-02	ci right 6.268680e-02	k: 14812	n:240000
ALX4   240000 perm   66 sec   (3633 perm/sec)   p_kst 6.171667e-02   p_cons 1.254167e-03   p_joint 7.516667e-03

Joint ci ratio: 8.975516e-02	ci left: 7.232000e-03	ci right 7.915491e-03	k: 1892	n:250000
Cons ci ratio: 2.196824e-01	ci left: 1.132316e-03	ci right 1.415449e-03	k: 317	n:250000
KS ci ratio: 3.057128e-02	ci left: 6.076388e-02	ci right 6.265429e-02	k: 15426	n:250000
ALX4   250000 perm   70 sec   (3583 perm/sec)   p_kst 6.170400e-02   p_cons 1.268000e-03   p_joint 7.568000e-03

Joint ci ratio: 9.161458e-02	ci left: 6.671838e-03	ci right 7.316149e-03	k: 1817	n:260000
Cons ci ratio: 2.163088e-01	ci left: 1.125127e-03	ci right 1.401568e-03	k: 327	n:260000
KS ci ratio: 2.999861e-02	ci left: 6.070173e-02	ci right 6.255422e-02	k: 16022	n:260000
ALX4   260000 perm   74 sec   (3534 perm/sec)   p_kst 6.162308e-02   p_cons 1.257692e-03   p_joint 6.988462e-03

Joint ci ratio: 9.006847e-02	ci left: 6.652762e-03	ci right 7.283817e-03	k: 1880	n:270000
Cons ci ratio: 2.118346e-01	ci left: 1.132528e-03	ci right 1.404285e-03	k: 341	n:270000
KS ci ratio: 2.942585e-02	ci left: 6.076586e-02	ci right 6.258430e-02	k: 16651	n:270000
ALX4   270000 perm   77 sec   (3486 perm/sec)   p_kst 6.167037e-02   p_cons 1.262963e-03   p_joint 6.962963e-03

Joint ci ratio: 8.834672e-02	ci left: 6.673556e-03	ci right 7.293857e-03	k: 1954	n:280000
Cons ci ratio: 2.097016e-01	ci left: 1.115760e-03	ci right 1.380451e-03	k: 348	n:280000
KS ci ratio: 2.889895e-02	ci left: 6.076897e-02	ci right 6.255440e-02	k: 17264	n:280000
ALX4   280000 perm   82 sec   (3431 perm/sec)   p_kst 6.165714e-02   p_cons 1.242857e-03   p_joint 6.978571e-03

Joint ci ratio: 8.946998e-02	ci left: 6.281540e-03	ci right 6.873214e-03	k: 1906	n:290000
Cons ci ratio: 2.064735e-01	ci left: 1.113240e-03	ci right 1.372754e-03	k: 359	n:290000
KS ci ratio: 2.838415e-02	ci left: 6.083380e-02	ci right 6.258877e-02	k: 17895	n:290000
ALX4   290000 perm   86 sec   (3386 perm/sec)   p_kst 6.170690e-02   p_cons 1.237931e-03   p_joint 6.572414e-03

Joint ci ratio: 8.550829e-02	ci left: 6.659087e-03	ci right 7.257164e-03	k: 2086	n:300000
Cons ci ratio: 2.033900e-01	ci left: 1.110917e-03	ci right 1.365542e-03	k: 370	n:300000
KS ci ratio: 2.791841e-02	ci left: 6.080184e-02	ci right 6.252664e-02	k: 18498	n:300000
ALX4   300000 perm   90 sec   (3341 perm/sec)   p_kst 6.166000e-02   p_cons 1.233333e-03   p_joint 6.953333e-03

Joint ci ratio: 8.484521e-02	ci left: 6.548446e-03	ci right 7.131799e-03	k: 2119	n:310000
Cons ci ratio: 2.009681e-01	ci left: 1.102643e-03	ci right 1.351993e-03	k: 379	n:310000
KS ci ratio: 2.747563e-02	ci left: 6.076896e-02	ci right 6.246506e-02	k: 19100	n:310000
ALX4   310000 perm   94 sec   (3298 perm/sec)   p_kst 6.161290e-02   p_cons 1.222581e-03   p_joint 6.835484e-03

Joint ci ratio: 8.302120e-02	ci left: 6.631403e-03	ci right 7.208831e-03	k: 2213	n:320000
Cons ci ratio: 1.983756e-01	ci left: 1.097873e-03	ci right 1.342554e-03	k: 389	n:320000
KS ci ratio: 2.708551e-02	ci left: 6.060170e-02	ci right 6.226875e-02	k: 19658	n:320000
ALX4   320000 perm   98 sec   (3256 perm/sec)   p_kst 6.143125e-02   p_cons 1.215625e-03   p_joint 6.915625e-03

Joint ci ratio: 8.252487e-02	ci left: 6.510559e-03	ci right 7.073912e-03	k: 2240	n:330000
Cons ci ratio: 1.941870e-01	ci left: 1.113589e-03	ci right 1.355912e-03	k: 406	n:330000
KS ci ratio: 2.666871e-02	ci left: 6.062845e-02	ci right 6.227017e-02	k: 20277	n:330000
ALX4   330000 perm   103 sec   (3215 perm/sec)   p_kst 6.144545e-02   p_cons 1.230303e-03   p_joint 6.787879e-03

Joint ci ratio: 8.163947e-02	ci left: 6.460224e-03	ci right 7.012939e-03	k: 2289	n:340000
Cons ci ratio: 1.927731e-01	ci left: 1.097627e-03	ci right 1.334535e-03	k: 412	n:340000
KS ci ratio: 2.627057e-02	ci left: 6.065381e-02	ci right 6.227132e-02	k: 20896	n:340000
ALX4   340000 perm   107 sec   (3177 perm/sec)   p_kst 6.145882e-02   p_cons 1.211765e-03   p_joint 6.732353e-03

Joint ci ratio: 7.952516e-02	ci left: 6.620015e-03	ci right 7.171054e-03	k: 2412	n:350000
Cons ci ratio: 1.891431e-01	ci left: 1.109796e-03	ci right 1.344301e-03	k: 428	n:350000
KS ci ratio: 2.588078e-02	ci left: 6.071764e-02	ci right 6.231248e-02	k: 21529	n:350000
ALX4   350000 perm   112 sec   (3139 perm/sec)   p_kst 6.151143e-02   p_cons 1.222857e-03   p_joint 6.891429e-03

Joint ci ratio: 7.858750e-02	ci left: 6.594048e-03	ci right 7.136157e-03	k: 2470	n:360000
Cons ci ratio: 1.865520e-01	ci left: 1.110734e-03	ci right 1.341859e-03	k: 440	n:360000
KS ci ratio: 2.553117e-02	ci left: 6.067318e-02	ci right 6.224500e-02	k: 22124	n:360000
ALX4   360000 perm   116 sec   (3101 perm/sec)   p_kst 6.145556e-02   p_cons 1.222222e-03   p_joint 6.861111e-03

Joint ci ratio: 7.743598e-02	ci left: 6.611931e-03	ci right 7.147187e-03	k: 2544	n:370000
Cons ci ratio: 1.830559e-01	ci left: 1.124536e-03	ci right 1.353660e-03	k: 457	n:370000
KS ci ratio: 2.519181e-02	ci left: 6.064737e-02	ci right 6.219734e-02	k: 22725	n:370000
ALX4   370000 perm   121 sec   (3065 perm/sec)   p_kst 6.141892e-02   p_cons 1.235135e-03   p_joint 6.875676e-03

Joint ci ratio: 7.646605e-02	ci left: 6.605693e-03	ci right 7.133447e-03	k: 2609	n:380000
Cons ci ratio: 1.803203e-01	ci left: 1.130110e-03	ci right 1.356553e-03	k: 471	n:380000
KS ci ratio: 2.484634e-02	ci left: 6.071201e-02	ci right 6.224205e-02	k: 23360	n:380000
ALX4   380000 perm   125 sec   (3030 perm/sec)   p_kst 6.147368e-02   p_cons 1.239474e-03   p_joint 6.865789e-03

Joint ci ratio: 7.544652e-02	ci left: 6.614911e-03	ci right 7.136046e-03	k: 2680	n:390000
Cons ci ratio: 1.777038e-01	ci left: 1.135422e-03	ci right 1.359274e-03	k: 485	n:390000
KS ci ratio: 2.452342e-02	ci left: 6.073268e-02	ci right 6.224307e-02	k: 23979	n:390000
ALX4   390000 perm   130 sec   (2995 perm/sec)   p_kst 6.148462e-02   p_cons 1.243590e-03   p_joint 6.871795e-03

Joint ci ratio: 7.437153e-02	ci left: 6.640889e-03	ci right 7.156293e-03	k: 2758	n:400000
Cons ci ratio: 1.750228e-01	ci left: 1.142881e-03	ci right 1.364445e-03	k: 500	n:400000
KS ci ratio: 2.422012e-02	ci left: 6.071764e-02	ci right 6.220872e-02	k: 24584	n:400000
ALX4   400000 perm   135 sec   (2961 perm/sec)   p_kst 6.146000e-02   p_cons 1.250000e-03   p_joint 6.895000e-03

Joint ci ratio: 7.410789e-02	ci left: 6.526777e-03	ci right 7.031451e-03	k: 2778	n:410000
Cons ci ratio: 1.726271e-01	ci left: 1.147667e-03	ci right 1.366796e-03	k: 514	n:410000
KS ci ratio: 2.393286e-02	ci left: 6.067919e-02	ci right 6.215141e-02	k: 25179	n:410000
ALX4   410000 perm   140 sec   (2928 perm/sec)   p_kst 6.141220e-02   p_cons 1.253659e-03   p_joint 6.775610e-03

Joint ci ratio: 7.241513e-02	ci left: 6.677587e-03	ci right 7.181633e-03	k: 2909	n:420000
Cons ci ratio: 1.703272e-01	ci left: 1.152245e-03	ci right 1.369016e-03	k: 528	n:420000
KS ci ratio: 2.365021e-02	ci left: 6.066871e-02	ci right 6.212306e-02	k: 25785	n:420000
ALX4   420000 perm   145 sec   (2893 perm/sec)   p_kst 6.139286e-02   p_cons 1.257143e-03   p_joint 6.926190e-03

Joint ci ratio: 7.053007e-02	ci left: 6.880910e-03	ci right 7.386230e-03	k: 3066	n:430000
Cons ci ratio: 1.681169e-01	ci left: 1.156628e-03	ci right 1.371113e-03	k: 542	n:430000
KS ci ratio: 2.336697e-02	ci left: 6.070971e-02	ci right 6.214737e-02	k: 26413	n:430000
ALX4   430000 perm   151 sec   (2856 perm/sec)   p_kst 6.142558e-02   p_cons 1.260465e-03   p_joint 7.130233e-03

Joint ci ratio: 7.075687e-02	ci left: 6.682083e-03	ci right 7.174444e-03	k: 3047	n:440000
Cons ci ratio: 1.658414e-01	ci left: 1.163007e-03	ci right 1.375466e-03	k: 557	n:440000
KS ci ratio: 2.311097e-02	ci left: 6.066304e-02	ci right 6.208365e-02	k: 27003	n:440000
ALX4   440000 perm   156 sec   (2821 perm/sec)   p_kst 6.137045e-02   p_cons 1.265909e-03   p_joint 6.925000e-03

Joint ci ratio: 6.871513e-02	ci left: 6.933199e-03	ci right 7.428734e-03	k: 3230	n:450000
Cons ci ratio: 1.639426e-01	ci left: 1.164860e-03	ci right 1.374980e-03	k: 570	n:450000
KS ci ratio: 2.283457e-02	ci left: 6.076220e-02	ci right 6.216789e-02	k: 27658	n:450000
ALX4   450000 perm   161 sec   (2790 perm/sec)   p_kst 6.146222e-02   p_cons 1.266667e-03   p_joint 7.177778e-03

Joint ci ratio: 9.063542e-02	ci left: 3.866384e-03	ci right 4.235558e-03	k: 1862	n:460000
Cons ci ratio: 1.612801e-01	ci left: 1.179161e-03	ci right 1.388072e-03	k: 589	n:460000
KS ci ratio: 2.272217e-02	ci left: 6.007869e-02	ci right 6.146163e-02	k: 27953	n:460000
ALX4   460000 perm   167 sec   (2760 perm/sec)   p_kst 6.076739e-02   p_cons 1.280435e-03   p_joint 4.047826e-03

Joint ci ratio: 8.965421e-02	ci left: 3.869388e-03	ci right 4.234639e-03	k: 1903	n:470000
Cons ci ratio: 1.600646e-01	ci left: 1.172451e-03	ci right 1.378457e-03	k: 598	n:470000
KS ci ratio: 2.247818e-02	ci left: 6.009096e-02	ci right 6.145914e-02	k: 28563	n:470000
ALX4   470000 perm   172 sec   (2727 perm/sec)   p_kst 6.077234e-02   p_cons 1.272340e-03   p_joint 4.048936e-03

Joint ci ratio: 8.852158e-02	ci left: 3.888587e-03	ci right 4.250773e-03	k: 1952	n:480000
Cons ci ratio: 1.579682e-01	ci left: 1.180032e-03	ci right 1.384397e-03	k: 614	n:480000
KS ci ratio: 2.223499e-02	ci left: 6.013803e-02	ci right 6.149228e-02	k: 29190	n:480000
ALX4   480000 perm   178 sec   (2700 perm/sec)   p_kst 6.081250e-02   p_cons 1.279167e-03   p_joint 4.066667e-03

Joint ci ratio: 8.751866e-02	ci left: 3.899044e-03	ci right 4.257879e-03	k: 1997	n:490000
Cons ci ratio: 1.562001e-01	ci left: 1.183398e-03	ci right 1.385838e-03	k: 628	n:490000
KS ci ratio: 2.200188e-02	ci left: 6.017107e-02	ci right 6.151168e-02	k: 29811	n:490000
ALX4   490000 perm   183 sec   (2673 perm/sec)   p_kst 6.083878e-02   p_cons 1.281633e-03   p_joint 4.075510e-03

Joint ci ratio: 8.663426e-02	ci left: 3.901278e-03	ci right 4.256507e-03	k: 2038	n:500000
Cons ci ratio: 1.543700e-01	ci left: 1.188565e-03	ci right 1.389285e-03	k: 643	n:500000
KS ci ratio: 2.178205e-02	ci left: 6.017102e-02	ci right 6.149807e-02	k: 30416	n:500000
ALX4   500000 perm   189 sec   (2647 perm/sec)   p_kst 6.083200e-02   p_cons 1.286000e-03   p_joint 4.076000e-03

Joint ci ratio: 8.594226e-02	ci left: 3.888091e-03	ci right 4.239149e-03	k: 2071	n:510000
Cons ci ratio: 1.530685e-01	ci left: 1.185999e-03	ci right 1.384442e-03	k: 654	n:510000
KS ci ratio: 2.156794e-02	ci left: 6.017495e-02	ci right 6.148887e-02	k: 31023	n:510000
ALX4   510000 perm   195 sec   (2620 perm/sec)   p_kst 6.082941e-02   p_cons 1.282353e-03   p_joint 4.060784e-03

Joint ci ratio: 8.021880e-02	ci left: 4.387729e-03	ci right 4.756286e-03	k: 2376	n:520000
Cons ci ratio: 1.513451e-01	ci left: 1.190939e-03	ci right 1.387762e-03	k: 669	n:520000
KS ci ratio: 2.136433e-02	ci left: 6.015582e-02	ci right 6.145677e-02	k: 31618	n:520000
ALX4   520000 perm   200 sec   (2594 perm/sec)   p_kst 6.080385e-02   p_cons 1.286538e-03   p_joint 4.569231e-03

Joint ci ratio: 8.317349e-02	ci left: 3.999946e-03	ci right 4.348905e-03	k: 2211	n:530000
Cons ci ratio: 1.497881e-01	ci left: 1.193888e-03	ci right 1.388987e-03	k: 683	n:530000
KS ci ratio: 2.114962e-02	ci left: 6.022758e-02	ci right 6.151684e-02	k: 32261	n:530000
ALX4   530000 perm   206 sec   (2570 perm/sec)   p_kst 6.086981e-02   p_cons 1.288679e-03   p_joint 4.171698e-03

Joint ci ratio: 8.226674e-02	ci left: 4.014738e-03	ci right 4.360985e-03	k: 2260	n:540000
Cons ci ratio: 1.480659e-01	ci left: 1.200305e-03	ci right 1.393998e-03	k: 699	n:540000
KS ci ratio: 2.095447e-02	ci left: 6.022489e-02	ci right 6.150205e-02	k: 32865	n:540000
ALX4   540000 perm   212 sec   (2545 perm/sec)   p_kst 6.086111e-02   p_cons 1.294444e-03   p_joint 4.185185e-03

Joint ci ratio: 8.174514e-02	ci left: 3.993387e-03	ci right 4.335505e-03	k: 2289	n:550000
Cons ci ratio: 1.470199e-01	ci left: 1.195992e-03	ci right 1.387505e-03	k: 709	n:550000
KS ci ratio: 2.076100e-02	ci left: 6.024224e-02	ci right 6.150784e-02	k: 33480	n:550000
ALX4   550000 perm   218 sec   (2522 perm/sec)   p_kst 6.087273e-02   p_cons 1.289091e-03   p_joint 4.161818e-03

Joint ci ratio: 8.225466e-02	ci left: 3.873092e-03	ci right 4.207071e-03	k: 2261	n:560000
Cons ci ratio: 1.455913e-01	ci left: 1.198720e-03	ci right 1.388643e-03	k: 723	n:560000
KS ci ratio: 2.057665e-02	ci left: 6.023771e-02	ci right 6.149184e-02	k: 34083	n:560000
ALX4   560000 perm   224 sec   (2498 perm/sec)   p_kst 6.086250e-02   p_cons 1.291071e-03   p_joint 4.037500e-03

Joint ci ratio: 8.489806e-02	ci left: 3.568072e-03	ci right 3.886127e-03	k: 2123	n:570000
Cons ci ratio: 1.444980e-01	ci left: 1.196287e-03	ci right 1.384279e-03	k: 734	n:570000
KS ci ratio: 2.039524e-02	ci left: 6.024386e-02	ci right 6.148693e-02	k: 34692	n:570000
ALX4   570000 perm   230 sec   (2474 perm/sec)   p_kst 6.086316e-02   p_cons 1.287719e-03   p_joint 3.724561e-03

Joint ci ratio: 8.420726e-02	ci left: 3.565623e-03	ci right 3.880746e-03	k: 2158	n:580000
Cons ci ratio: 1.437186e-01	ci left: 1.188957e-03	ci right 1.374702e-03	k: 742	n:580000
KS ci ratio: 2.021276e-02	ci left: 6.028244e-02	ci right 6.151505e-02	k: 35320	n:580000
ALX4   580000 perm   237 sec   (2451 perm/sec)   p_kst 6.089655e-02   p_cons 1.279310e-03   p_joint 3.720690e-03

Joint ci ratio: 8.355217e-02	ci left: 3.561606e-03	ci right 3.873806e-03	k: 2192	n:590000
Cons ci ratio: 1.423833e-01	ci left: 1.191685e-03	ci right 1.375980e-03	k: 756	n:590000
KS ci ratio: 2.003627e-02	ci left: 6.031302e-02	ci right 6.153536e-02	k: 35944	n:590000
ALX4   590000 perm   243 sec   (2428 perm/sec)   p_kst 6.092203e-02   p_cons 1.281356e-03   p_joint 3.715254e-03

Joint ci ratio: 8.436953e-02	ci left: 3.433706e-03	ci right 3.737784e-03	k: 2150	n:600000
Cons ci ratio: 1.418231e-01	ci left: 1.181468e-03	ci right 1.363403e-03	k: 762	n:600000
KS ci ratio: 1.987591e-02	ci left: 6.027627e-02	ci right 6.148798e-02	k: 36528	n:600000
ALX4   600000 perm   249 sec   (2406 perm/sec)   p_kst 6.088000e-02   p_cons 1.270000e-03   p_joint 3.583333e-03

Joint ci ratio: 8.376840e-02	ci left: 3.427167e-03	ci right 3.728398e-03	k: 2181	n:610000
Cons ci ratio: 1.405395e-01	ci left: 1.184240e-03	ci right 1.364813e-03	k: 776	n:610000
KS ci ratio: 1.971764e-02	ci left: 6.025055e-02	ci right 6.145199e-02	k: 37118	n:610000
ALX4   610000 perm   256 sec   (2384 perm/sec)   p_kst 6.084918e-02   p_cons 1.272131e-03   p_joint 3.575410e-03

Joint ci ratio: 7.843093e-02	ci left: 3.855472e-03	ci right 4.171771e-03	k: 2487	n:620000
Cons ci ratio: 1.392901e-01	ci left: 1.186929e-03	ci right 1.366170e-03	k: 790	n:620000
KS ci ratio: 1.955260e-02	ci left: 6.028671e-02	ci right 6.147869e-02	k: 37746	n:620000
ALX4   620000 perm   262 sec   (2362 perm/sec)   p_kst 6.088065e-02   p_cons 1.274194e-03   p_joint 4.011290e-03

Joint ci ratio: 7.780797e-02	ci left: 3.856525e-03	ci right 4.170285e-03	k: 2527	n:630000
Cons ci ratio: 1.380734e-01	ci left: 1.189540e-03	ci right 1.367477e-03	k: 804	n:630000
KS ci ratio: 1.939137e-02	ci left: 6.032334e-02	ci right 6.150610e-02	k: 38375	n:630000
ALX4   630000 perm   269 sec   (2341 perm/sec)   p_kst 6.091270e-02   p_cons 1.276190e-03   p_joint 4.011111e-03

Joint ci ratio: 7.710923e-02	ci left: 3.866751e-03	ci right 4.178390e-03	k: 2573	n:640000
Cons ci ratio: 1.370558e-01	ci left: 1.189059e-03	ci right 1.365506e-03	k: 816	n:640000
KS ci ratio: 1.924405e-02	ci left: 6.029975e-02	ci right 6.147298e-02	k: 38966	n:640000
ALX4   640000 perm   276 sec   (2320 perm/sec)   p_kst 6.088437e-02   p_cons 1.275000e-03   p_joint 4.020312e-03

Joint ci ratio: 7.612327e-02	ci left: 3.908368e-03	ci right 4.219155e-03	k: 2640	n:650000
Cons ci ratio: 1.361425e-01	ci left: 1.187110e-03	ci right 1.361999e-03	k: 827	n:650000
KS ci ratio: 1.909104e-02	ci left: 6.033054e-02	ci right 6.149492e-02	k: 39592	n:650000
ALX4   650000 perm   283 sec   (2300 perm/sec)   p_kst 6.091077e-02   p_cons 1.272308e-03   p_joint 4.061538e-03

Joint ci ratio: 7.566674e-02	ci left: 3.896714e-03	ci right 4.204634e-03	k: 2672	n:660000
Cons ci ratio: 1.354090e-01	ci left: 1.182296e-03	ci right 1.355462e-03	k: 836	n:660000
KS ci ratio: 1.894389e-02	ci left: 6.034684e-02	ci right 6.150247e-02	k: 40209	n:660000
ALX4   660000 perm   289 sec   (2281 perm/sec)   p_kst 6.092273e-02   p_cons 1.266667e-03   p_joint 4.048485e-03

Joint ci ratio: 7.207531e-02	ci left: 4.237055e-03	ci right 4.555313e-03	k: 2944	n:670000
Cons ci ratio: 1.343695e-01	ci left: 1.183398e-03	ci right 1.355289e-03	k: 849	n:670000
KS ci ratio: 1.880498e-02	ci left: 6.033298e-02	ci right 6.147978e-02	k: 40806	n:670000
ALX4   670000 perm   296 sec   (2261 perm/sec)   p_kst 6.090448e-02   p_cons 1.267164e-03   p_joint 4.394030e-03

Joint ci ratio: 7.153083e-02	ci left: 4.239734e-03	ci right 4.555688e-03	k: 2989	n:680000
Cons ci ratio: 1.335862e-01	ci left: 1.180208e-03	ci right 1.350557e-03	k: 859	n:680000
KS ci ratio: 1.866190e-02	ci left: 6.036348e-02	ci right 6.150203e-02	k: 41433	n:680000
ALX4   680000 perm   303 sec   (2241 perm/sec)   p_kst 6.093088e-02   p_cons 1.263235e-03   p_joint 4.395588e-03

Joint ci ratio: 5.577784e-02	ci left: 6.908954e-03	ci right 7.306795e-03	k: 4903	n:690000
Cons ci ratio: 1.327402e-01	ci left: 1.178515e-03	ci right 1.347456e-03	k: 870	n:690000
KS ci ratio: 1.853047e-02	ci left: 6.034118e-02	ci right 6.147121e-02	k: 42024	n:690000
ALX4   690000 perm   310 sec   (2222 perm/sec)   p_kst 6.090435e-02   p_cons 1.260870e-03   p_joint 7.105797e-03

Joint ci ratio: 5.228628e-02	ci left: 7.757383e-03	ci right 8.175276e-03	k: 5575	n:700000
Cons ci ratio: 1.317605e-01	ci left: 1.179636e-03	ci right 1.347392e-03	k: 883	n:700000
KS ci ratio: 1.840018e-02	ci left: 6.032950e-02	ci right 6.145128e-02	k: 42622	n:700000
ALX4   700000 perm   318 sec   (2204 perm/sec)   p_kst 6.088857e-02   p_cons 1.261429e-03   p_joint 7.964286e-03

Joint ci ratio: 7.011519e-02	ci left: 4.229377e-03	ci right 4.538068e-03	k: 3111	n:710000
Cons ci ratio: 1.302941e-01	ci left: 1.190267e-03	ci right 1.357506e-03	k: 903	n:710000
KS ci ratio: 1.826967e-02	ci left: 6.033641e-02	ci right 6.145028e-02	k: 43233	n:710000
ALX4   710000 perm   325 sec   (2185 perm/sec)   p_kst 6.089155e-02   p_cons 1.271831e-03   p_joint 4.381690e-03

Joint ci ratio: 6.971350e-02	ci left: 4.219761e-03	ci right 4.525914e-03	k: 3147	n:720000
Cons ci ratio: 1.293673e-01	ci left: 1.191205e-03	ci right 1.357294e-03	k: 916	n:720000
KS ci ratio: 1.814674e-02	ci left: 6.031272e-02	ci right 6.141859e-02	k: 43822	n:720000
ALX4   720000 perm   332 sec   (2167 perm/sec)   p_kst 6.086389e-02   p_cons 1.272222e-03   p_joint 4.370833e-03

Joint ci ratio: 6.926404e-02	ci left: 4.217144e-03	ci right 4.521056e-03	k: 3188	n:730000
Cons ci ratio: 1.285291e-01	ci left: 1.190795e-03	ci right 1.355669e-03	k: 928	n:730000
KS ci ratio: 1.801892e-02	ci left: 6.033609e-02	ci right 6.143452e-02	k: 44445	n:730000
ALX4   730000 perm   340 sec   (2149 perm/sec)   p_kst 6.088356e-02   p_cons 1.271233e-03   p_joint 4.367123e-03

Joint ci ratio: 6.886600e-02	ci left: 4.209292e-03	ci right 4.510825e-03	k: 3225	n:740000
Cons ci ratio: 1.279113e-01	ci left: 1.186475e-03	ci right 1.349901e-03	k: 937	n:740000
KS ci ratio: 1.790054e-02	ci left: 6.031580e-02	ci right 6.140656e-02	k: 45036	n:740000
ALX4   740000 perm   347 sec   (2131 perm/sec)   p_kst 6.085946e-02   p_cons 1.266216e-03   p_joint 4.358108e-03

Joint ci ratio: 5.044651e-02	ci left: 7.785139e-03	ci right 8.189342e-03	k: 5989	n:750000
Cons ci ratio: 1.271680e-01	ci left: 1.184854e-03	ci right 1.347037e-03	k: 948	n:750000
KS ci ratio: 1.778155e-02	ci left: 6.031465e-02	ci right 6.139807e-02	k: 45641	n:750000
ALX4   750000 perm   355 sec   (2113 perm/sec)   p_kst 6.085467e-02   p_cons 1.264000e-03   p_joint 7.985333e-03

Joint ci ratio: 6.769971e-02	ci left: 4.243376e-03	ci right 4.542000e-03	k: 3337	n:760000
Cons ci ratio: 1.265695e-01	ci left: 1.180730e-03	ci right 1.341531e-03	k: 957	n:760000
KS ci ratio: 1.765840e-02	ci left: 6.035550e-02	ci right 6.143206e-02	k: 46278	n:760000
ALX4   760000 perm   363 sec   (2096 perm/sec)   p_kst 6.089211e-02   p_cons 1.259211e-03   p_joint 4.390789e-03

Joint ci ratio: 6.723791e-02	ci left: 4.247000e-03	ci right 4.543761e-03	k: 3383	n:770000
Cons ci ratio: 1.255254e-01	ci left: 1.185520e-03	ci right 1.345542e-03	k: 973	n:770000
KS ci ratio: 1.753916e-02	ci left: 6.038625e-02	ci right 6.145602e-02	k: 46908	n:770000
ALX4   770000 perm   370 sec   (2080 perm/sec)   p_kst 6.091948e-02   p_cons 1.263636e-03   p_joint 4.393506e-03

Joint ci ratio: 6.719993e-02	ci left: 4.197589e-03	ci right 4.490726e-03	k: 3387	n:780000
Cons ci ratio: 1.248226e-01	ci left: 1.183982e-03	ci right 1.342836e-03	k: 984	n:780000
KS ci ratio: 1.743266e-02	ci left: 6.034856e-02	ci right 6.141111e-02	k: 47485	n:780000
ALX4   780000 perm   378 sec   (2064 perm/sec)   p_kst 6.087821e-02   p_cons 1.261538e-03   p_joint 4.342308e-03

Joint ci ratio: 6.678730e-02	ci left: 4.196729e-03	ci right 4.487936e-03	k: 3429	n:790000
Cons ci ratio: 1.241316e-01	ci left: 1.182486e-03	ci right 1.340195e-03	k: 995	n:790000
KS ci ratio: 1.731906e-02	ci left: 6.037111e-02	ci right 6.142705e-02	k: 48109	n:790000
ALX4   790000 perm   386 sec   (2048 perm/sec)   p_kst 6.089747e-02   p_cons 1.259494e-03   p_joint 4.340506e-03

Joint ci ratio: 6.642061e-02	ci left: 4.190979e-03	ci right 4.480128e-03	k: 3467	n:800000
Cons ci ratio: 1.235133e-01	ci left: 1.179817e-03	ci right 1.336330e-03	k: 1005	n:800000
KS ci ratio: 1.721217e-02	ci left: 6.036323e-02	ci right 6.141246e-02	k: 48709	n:800000
ALX4   800000 perm   394 sec   (2032 perm/sec)   p_kst 6.088625e-02   p_cons 1.256250e-03   p_joint 4.333750e-03

Joint ci ratio: 6.600320e-02	ci left: 4.192660e-03	ci right 4.480038e-03	k: 3511	n:810000
Cons ci ratio: 1.226626e-01	ci left: 1.182003e-03	ci right 1.337648e-03	k: 1019	n:810000
KS ci ratio: 1.710372e-02	ci left: 6.037892e-02	ci right 6.142175e-02	k: 49328	n:810000
ALX4   810000 perm   402 sec   (2016 perm/sec)   p_kst 6.089877e-02   p_cons 1.258025e-03   p_joint 4.334568e-03

Joint ci ratio: 6.561209e-02	ci left: 4.191907e-03	ci right 4.477466e-03	k: 3553	n:820000
Cons ci ratio: 1.219474e-01	ci left: 1.181775e-03	ci right 1.336417e-03	k: 1031	n:820000
KS ci ratio: 1.700782e-02	ci left: 6.032381e-02	ci right 6.135978e-02	k: 49889	n:820000
ALX4   820000 perm   410 sec   (2001 perm/sec)   p_kst 6.084024e-02   p_cons 1.257317e-03   p_joint 4.332927e-03

Joint ci ratio: 6.525520e-02	ci left: 4.187621e-03	ci right 4.471278e-03	k: 3592	n:830000
Cons ci ratio: 1.213610e-01	ci left: 1.179218e-03	ci right 1.332730e-03	k: 1041	n:830000
KS ci ratio: 1.690904e-02	ci left: 6.030004e-02	ci right 6.132953e-02	k: 50475	n:830000
ALX4   830000 perm   418 sec   (1986 perm/sec)   p_kst 6.081325e-02   p_cons 1.254217e-03   p_joint 4.327711e-03

Joint ci ratio: 6.476096e-02	ci left: 4.202181e-03	ci right 4.484587e-03	k: 3647	n:840000
Cons ci ratio: 1.206682e-01	ci left: 1.179033e-03	ci right 1.331582e-03	k: 1053	n:840000
KS ci ratio: 1.680584e-02	ci left: 6.031836e-02	ci right 6.134182e-02	k: 51096	n:840000
ALX4   840000 perm   426 sec   (1971 perm/sec)   p_kst 6.082857e-02   p_cons 1.253571e-03   p_joint 4.341667e-03

Joint ci ratio: 6.433015e-02	ci left: 4.209460e-03	ci right 4.490404e-03	k: 3696	n:850000
Cons ci ratio: 1.196505e-01	ci left: 1.185703e-03	ci right 1.337729e-03	k: 1071	n:850000
KS ci ratio: 1.670073e-02	ci left: 6.036204e-02	ci right 6.137978e-02	k: 51739	n:850000
ALX4   850000 perm   435 sec   (1956 perm/sec)   p_kst 6.086941e-02   p_cons 1.260000e-03   p_joint 4.348235e-03

Joint ci ratio: 6.400227e-02	ci left: 4.203990e-03	ci right 4.483086e-03	k: 3734	n:860000
Cons ci ratio: 1.191516e-01	ci left: 1.182068e-03	ci right 1.332952e-03	k: 1080	n:860000
KS ci ratio: 1.660127e-02	ci left: 6.037925e-02	ci right 6.139115e-02	k: 52360	n:860000
ALX4   860000 perm   443 sec   (1942 perm/sec)   p_kst 6.088372e-02   p_cons 1.255814e-03   p_joint 4.341860e-03

Joint ci ratio: 6.635545e-02	ci left: 3.862795e-03	ci right 4.129030e-03	k: 3475	n:870000
Cons ci ratio: 1.184957e-01	ci left: 1.181864e-03	ci right 1.331833e-03	k: 1092	n:870000
KS ci ratio: 1.650954e-02	ci left: 6.035486e-02	ci right 6.136071e-02	k: 52945	n:870000
ALX4   870000 perm   451 sec   (1927 perm/sec)   p_kst 6.085632e-02   p_cons 1.255172e-03   p_joint 3.994253e-03

Joint ci ratio: 6.532719e-02	ci left: 3.941847e-03	ci right 4.209161e-03	k: 3585	n:880000
Cons ci ratio: 1.178506e-01	ci left: 1.181667e-03	ci right 1.330738e-03	k: 1104	n:880000
KS ci ratio: 1.641426e-02	ci left: 6.036613e-02	ci right 6.136631e-02	k: 53561	n:880000
ALX4   880000 perm   460 sec   (1913 perm/sec)   p_kst 6.086477e-02   p_cons 1.254545e-03   p_joint 4.073864e-03

Joint ci ratio: 6.502895e-02	ci left: 3.934030e-03	ci right 4.199551e-03	k: 3618	n:890000
Cons ci ratio: 1.175854e-01	ci left: 1.173842e-03	ci right 1.321570e-03	k: 1109	n:890000
KS ci ratio: 1.632269e-02	ci left: 6.036261e-02	ci right 6.135710e-02	k: 54164	n:890000
ALX4   890000 perm   469 sec   (1899 perm/sec)   p_kst 6.085843e-02   p_cons 1.246067e-03   p_joint 4.065169e-03

Joint ci ratio: 6.532102e-02	ci left: 3.855338e-03	ci right 4.116760e-03	k: 3586	n:900000
Cons ci ratio: 1.170594e-01	ci left: 1.171584e-03	ci right 1.318323e-03	k: 1119	n:900000
KS ci ratio: 1.622728e-02	ci left: 6.039682e-02	ci right 6.138601e-02	k: 54801	n:900000
ALX4   900000 perm   477 sec   (1885 perm/sec)   p_kst 6.089000e-02   p_cons 1.243333e-03   p_joint 3.984444e-03

Joint ci ratio: 6.502285e-02	ci left: 3.848644e-03	ci right 4.108376e-03	k: 3619	n:910000
Cons ci ratio: 1.165921e-01	ci left: 1.168311e-03	ci right 1.314015e-03	k: 1128	n:910000
KS ci ratio: 1.614220e-02	ci left: 6.036899e-02	ci right 6.135249e-02	k: 55382	n:910000
ALX4   910000 perm   486 sec   (1872 perm/sec)   p_kst 6.085934e-02   p_cons 1.239560e-03   p_joint 3.976923e-03

Joint ci ratio: 6.154510e-02	ci left: 4.255070e-03	ci right 4.526326e-03	k: 4038	n:920000
Cons ci ratio: 1.158758e-01	ci left: 1.170387e-03	ci right 1.315391e-03	k: 1142	n:920000
KS ci ratio: 1.605463e-02	ci left: 6.036885e-02	ci right 6.134696e-02	k: 55988	n:920000
ALX4   920000 perm   495 sec   (1859 perm/sec)   p_kst 6.085652e-02   p_cons 1.241304e-03   p_joint 4.389130e-03

Joint ci ratio: 6.556420e-02	ci left: 3.703463e-03	ci right 3.955557e-03	k: 3560	n:930000
Cons ci ratio: 1.154225e-01	ci left: 1.167199e-03	ci right 1.311205e-03	k: 1151	n:930000
KS ci ratio: 1.604604e-02	ci left: 5.981918e-02	ci right 6.078786e-02	k: 56081	n:930000
ALX4   930000 perm   504 sec   (1845 perm/sec)   p_kst 6.030215e-02   p_cons 1.237634e-03   p_joint 3.827957e-03

Joint ci ratio: 6.558403e-02	ci left: 3.661969e-03	ci right 3.911317e-03	k: 3558	n:940000
Cons ci ratio: 1.147767e-01	ci left: 1.168214e-03	ci right 1.311484e-03	k: 1164	n:940000
KS ci ratio: 1.595478e-02	ci left: 5.986200e-02	ci right 6.082581e-02	k: 56722	n:940000
ALX4   940000 perm   513 sec   (1832 perm/sec)   p_kst 6.034255e-02   p_cons 1.238298e-03   p_joint 3.785106e-03

Joint ci ratio: 6.527312e-02	ci left: 3.658626e-03	ci right 3.906520e-03	k: 3592	n:950000
Cons ci ratio: 1.141901e-01	ci left: 1.168187e-03	ci right 1.310672e-03	k: 1176	n:950000
KS ci ratio: 1.587374e-02	ci left: 5.984207e-02	ci right 6.080062e-02	k: 57304	n:950000
ALX4   950000 perm   522 sec   (1819 perm/sec)   p_kst 6.032000e-02   p_cons 1.237895e-03   p_joint 3.781053e-03

Joint ci ratio: 6.495761e-02	ci left: 3.656380e-03	ci right 3.902879e-03	k: 3627	n:960000
Cons ci ratio: 1.136603e-01	ci left: 1.167150e-03	ci right 1.308804e-03	k: 1187	n:960000
KS ci ratio: 1.578885e-02	ci left: 5.985888e-02	ci right 6.081252e-02	k: 57921	n:960000
ALX4   960000 perm   531 sec   (1806 perm/sec)   p_kst 6.033438e-02   p_cons 1.236458e-03   p_joint 3.778125e-03

Joint ci ratio: 6.468208e-02	ci left: 3.650125e-03	ci right 3.895121e-03	k: 3658	n:970000
Cons ci ratio: 1.134223e-01	ci left: 1.160126e-03	ci right 1.300612e-03	k: 1192	n:970000
KS ci ratio: 1.571002e-02	ci left: 5.984146e-02	ci right 6.079003e-02	k: 58505	n:970000
ALX4   970000 perm   541 sec   (1794 perm/sec)   p_kst 6.031443e-02   p_cons 1.228866e-03   p_joint 3.771134e-03

Joint ci ratio: 6.441003e-02	ci left: 3.644001e-03	ci right 3.887518e-03	k: 3689	n:980000
Cons ci ratio: 1.129030e-01	ci left: 1.159194e-03	ci right 1.298883e-03	k: 1203	n:980000
KS ci ratio: 1.563207e-02	ci left: 5.982645e-02	ci right 6.077003e-02	k: 59091	n:980000
ALX4   980000 perm   550 sec   (1781 perm/sec)   p_kst 6.029694e-02   p_cons 1.227551e-03   p_joint 3.764286e-03

Joint ci ratio: 6.409817e-02	ci left: 3.642972e-03	ci right 3.885198e-03	k: 3725	n:990000
Cons ci ratio: 1.122061e-01	ci left: 1.162210e-03	ci right 1.301340e-03	k: 1218	n:990000
KS ci ratio: 1.555500e-02	ci left: 5.981376e-02	ci right 6.075245e-02	k: 59679	n:990000
ALX4   990000 perm   560 sec   (1769 perm/sec)   p_kst 6.028182e-02   p_cons 1.230303e-03   p_joint 3.762626e-03

Joint ci ratio: 6.379079e-02	ci left: 3.641967e-03	ci right 3.882922e-03	k: 3761	n:1000000
Cons ci ratio: 1.116125e-01	ci left: 1.163224e-03	ci right 1.301691e-03	k: 1231	n:1000000
KS ci ratio: 1.547714e-02	ci left: 5.981529e-02	ci right 6.074926e-02	k: 60281	n:1000000
ALX4   1000000 perm   569 sec   (1757 perm/sec)   p_kst 6.028100e-02   p_cons 1.231000e-03   p_joint 3.761000e-03

Joint ci ratio: 6.352979e-02	ci left: 3.636112e-03	ci right 3.875659e-03	k: 3792	n:1010000
Cons ci ratio: 1.112072e-01	ci left: 1.160370e-03	ci right 1.297962e-03	k: 1240	n:1010000
KS ci ratio: 1.540179e-02	ci left: 5.980693e-02	ci right 6.073619e-02	k: 60873	n:1010000
ALX4   1010000 perm   579 sec   (1746 perm/sec)   p_kst 6.027030e-02   p_cons 1.227723e-03   p_joint 3.754455e-03

Joint ci ratio: 6.317254e-02	ci left: 3.641953e-03	ci right 3.880486e-03	k: 3835	n:1020000
Cons ci ratio: 1.107620e-01	ci left: 1.158525e-03	ci right 1.295313e-03	k: 1250	n:1020000
KS ci ratio: 1.532633e-02	ci left: 5.980754e-02	ci right 6.073221e-02	k: 61474	n:1020000
ALX4   1020000 perm   588 sec   (1734 perm/sec)   p_kst 6.026863e-02   p_cons 1.225490e-03   p_joint 3.759804e-03

Joint ci ratio: 6.283752e-02	ci left: 3.645773e-03	ci right 3.883244e-03	k: 3876	n:1030000
Cons ci ratio: 1.101909e-01	ci left: 1.159550e-03	ci right 1.295707e-03	k: 1263	n:1030000
KS ci ratio: 1.525550e-02	ci left: 5.978203e-02	ci right 6.070200e-02	k: 62048	n:1030000
ALX4   1030000 perm   598 sec   (1723 perm/sec)   p_kst 6.024078e-02   p_cons 1.226214e-03   p_joint 3.763107e-03

Joint ci ratio: 6.253181e-02	ci left: 3.646684e-03	ci right 3.883016e-03	k: 3914	n:1040000
Cons ci ratio: 1.098008e-01	ci left: 1.156816e-03	ci right 1.292140e-03	k: 1272	n:1040000
KS ci ratio: 1.518281e-02	ci left: 5.977810e-02	ci right 6.069358e-02	k: 62644	n:1040000
ALX4   1040000 perm   608 sec   (1712 perm/sec)   p_kst 6.023462e-02   p_cons 1.223077e-03   p_joint 3.763462e-03

Joint ci ratio: 6.228590e-02	ci left: 3.641016e-03	ci right 3.876020e-03	k: 3945	n:1050000
Cons ci ratio: 1.094149e-01	ci left: 1.154135e-03	ci right 1.288640e-03	k: 1281	n:1050000
KS ci ratio: 1.510835e-02	ci left: 5.979513e-02	ci right 6.070635e-02	k: 63262	n:1050000
ALX4   1050000 perm   617 sec   (1701 perm/sec)   p_kst 6.024952e-02   p_cons 1.220000e-03   p_joint 3.757143e-03

Joint ci ratio: 6.195691e-02	ci left: 3.645674e-03	ci right 3.879692e-03	k: 3987	n:1060000
Cons ci ratio: 1.087383e-01	ci left: 1.157930e-03	ci right 1.291989e-03	k: 1297	n:1060000
KS ci ratio: 1.503498e-02	ci left: 5.981185e-02	ci right 6.071886e-02	k: 63880	n:1060000
ALX4   1060000 perm   627 sec   (1690 perm/sec)   p_kst 6.026415e-02   p_cons 1.223585e-03   p_joint 3.761321e-03

Joint ci ratio: 6.167150e-02	ci left: 3.645647e-03	ci right 3.878547e-03	k: 4024	n:1070000
Cons ci ratio: 1.081152e-01	ci left: 1.160747e-03	ci right 1.294313e-03	k: 1312	n:1070000
KS ci ratio: 1.496254e-02	ci left: 5.982920e-02	ci right 6.073206e-02	k: 64499	n:1070000
ALX4   1070000 perm   637 sec   (1679 perm/sec)   p_kst 6.027944e-02   p_cons 1.226168e-03   p_joint 3.760748e-03

Joint ci ratio: 6.131429e-02	ci left: 3.654741e-03	ci right 3.886821e-03	k: 4071	n:1080000
Cons ci ratio: 1.075028e-01	ci left: 1.163514e-03	ci right 1.296592e-03	k: 1327	n:1080000
KS ci ratio: 1.489052e-02	ci left: 5.985085e-02	ci right 6.074966e-02	k: 65123	n:1080000
ALX4   1080000 perm   647 sec   (1668 perm/sec)   p_kst 6.029907e-02   p_cons 1.228704e-03   p_joint 3.769444e-03

Joint ci ratio: 6.106747e-02	ci left: 3.651023e-03	ci right 3.881901e-03	k: 4104	n:1090000
Cons ci ratio: 1.070203e-01	ci left: 1.163553e-03	ci right 1.296001e-03	k: 1339	n:1090000
KS ci ratio: 1.482470e-02	ci left: 5.983281e-02	ci right 6.072733e-02	k: 65704	n:1090000
ALX4   1090000 perm   658 sec   (1657 perm/sec)   p_kst 6.027890e-02   p_cons 1.228440e-03   p_joint 3.765138e-03

Joint ci ratio: 6.089012e-02	ci left: 3.639317e-03	ci right 3.868763e-03	k: 4128	n:1100000
Cons ci ratio: 1.067025e-01	ci left: 1.160053e-03	ci right 1.291686e-03	k: 1347	n:1100000
KS ci ratio: 1.475856e-02	ci left: 5.982415e-02	ci right 6.071453e-02	k: 66295	n:1100000
ALX4   1100000 perm   668 sec   (1647 perm/sec)   p_kst 6.026818e-02   p_cons 1.224545e-03   p_joint 3.752727e-03

Joint ci ratio: 6.061913e-02	ci left: 3.639357e-03	ci right 3.867749e-03	k: 4165	n:1110000
Cons ci ratio: 1.061526e-01	ci left: 1.161879e-03	ci right 1.292998e-03	k: 1361	n:1110000
KS ci ratio: 1.468886e-02	ci left: 5.984978e-02	ci right 6.073630e-02	k: 66924	n:1110000
ALX4   1110000 perm   678 sec   (1637 perm/sec)   p_kst 6.029189e-02   p_cons 1.226126e-03   p_joint 3.752252e-03

Joint ci ratio: 6.030135e-02	ci left: 3.645555e-03	ci right 3.873094e-03	k: 4209	n:1120000
Cons ci ratio: 1.055344e-01	ci left: 1.165413e-03	ci right 1.296117e-03	k: 1377	n:1120000
KS ci ratio: 1.462036e-02	ci left: 5.987319e-02	ci right 6.075587e-02	k: 67551	n:1120000
ALX4   1120000 perm   688 sec   (1627 perm/sec)   p_kst 6.031339e-02   p_cons 1.229464e-03   p_joint 3.758036e-03

Joint ci ratio: 6.003103e-02	ci left: 3.646416e-03	ci right 3.872953e-03	k: 4247	n:1130000
Cons ci ratio: 1.050022e-01	ci left: 1.167163e-03	ci right 1.297362e-03	k: 1391	n:1130000
KS ci ratio: 1.455486e-02	ci left: 5.988031e-02	ci right 6.075911e-02	k: 68160	n:1130000
ALX4   1130000 perm   699 sec   (1617 perm/sec)   p_kst 6.031858e-02   p_cons 1.230973e-03   p_joint 3.758407e-03

Joint ci ratio: 5.972236e-02	ci left: 3.652449e-03	ci right 3.878154e-03	k: 4291	n:1140000
Cons ci ratio: 1.044781e-01	ci left: 1.168884e-03	ci right 1.298584e-03	k: 1405	n:1140000
KS ci ratio: 1.449180e-02	ci left: 5.987508e-02	ci right 6.074997e-02	k: 68755	n:1140000
ALX4   1140000 perm   709 sec   (1607 perm/sec)   p_kst 6.031140e-02   p_cons 1.232456e-03   p_joint 3.764035e-03

Joint ci ratio: 5.954259e-02	ci left: 3.642960e-03	ci right 3.867377e-03	k: 4317	n:1150000
Cons ci ratio: 1.041823e-01	ci left: 1.165494e-03	ci right 1.294430e-03	k: 1413	n:1150000
KS ci ratio: 1.443066e-02	ci left: 5.986128e-02	ci right 6.073224e-02	k: 69340	n:1150000
ALX4   1150000 perm   720 sec   (1597 perm/sec)   p_kst 6.029565e-02   p_cons 1.228696e-03   p_joint 3.753913e-03

Joint ci ratio: 5.927546e-02	ci left: 3.644676e-03	ci right 3.868158e-03	k: 4356	n:1160000
Cons ci ratio: 1.037431e-01	ci left: 1.165523e-03	ci right 1.293885e-03	k: 1425	n:1160000
KS ci ratio: 1.437084e-02	ci left: 5.984343e-02	ci right 6.071049e-02	k: 69920	n:1160000
ALX4   1160000 perm   731 sec   (1587 perm/sec)   p_kst 6.027586e-02   p_cons 1.228448e-03   p_joint 3.755172e-03

Joint ci ratio: 5.903213e-02	ci left: 3.643839e-03	ci right 3.866321e-03	k: 4392	n:1170000
Cons ci ratio: 1.031657e-01	ci left: 1.168883e-03	ci right 1.296855e-03	k: 1441	n:1170000
KS ci ratio: 1.431024e-02	ci left: 5.983781e-02	ci right 6.070112e-02	k: 70514	n:1170000
ALX4   1170000 perm   741 sec   (1578 perm/sec)   p_kst 6.026838e-02   p_cons 1.231624e-03   p_joint 3.753846e-03

Joint ci ratio: 5.882510e-02	ci left: 3.638843e-03	ci right 3.860214e-03	k: 4423	n:1180000
Cons ci ratio: 1.028454e-01	ci left: 1.166407e-03	ci right 1.293688e-03	k: 1450	n:1180000
KS ci ratio: 1.425072e-02	ci left: 5.982977e-02	ci right 6.068934e-02	k: 71105	n:1180000
ALX4   1180000 perm   752 sec   (1569 perm/sec)   p_kst 6.025847e-02   p_cons 1.228814e-03   p_joint 3.748305e-03

Joint ci ratio: 5.863345e-02	ci left: 3.632276e-03	ci right 3.852503e-03	k: 4452	n:1190000
Cons ci ratio: 1.024579e-01	ci left: 1.165612e-03	ci right 1.292298e-03	k: 1461	n:1190000
KS ci ratio: 1.419141e-02	ci left: 5.982606e-02	ci right 6.068197e-02	k: 71701	n:1190000
ALX4   1190000 perm   763 sec   (1560 perm/sec)   p_kst 6.025294e-02   p_cons 1.227731e-03   p_joint 3.741176e-03

Joint ci ratio: 5.843712e-02	ci left: 3.626641e-03	ci right 3.845765e-03	k: 4482	n:1200000
Cons ci ratio: 1.021093e-01	ci left: 1.164019e-03	ci right 1.290075e-03	k: 1471	n:1200000
KS ci ratio: 1.413159e-02	ci left: 5.983238e-02	ci right 6.068474e-02	k: 72309	n:1200000
ALX4   1200000 perm   774 sec   (1550 perm/sec)   p_kst 6.025750e-02   p_cons 1.225833e-03   p_joint 3.735000e-03

Joint ci ratio: 5.824922e-02	ci left: 3.620286e-03	ci right 3.838299e-03	k: 4511	n:1210000
Cons ci ratio: 1.016614e-01	ci left: 1.164869e-03	ci right 1.290431e-03	k: 1484	n:1210000
KS ci ratio: 1.407385e-02	ci left: 5.982790e-02	ci right 6.067669e-02	k: 72904	n:1210000
ALX4   1210000 perm   785 sec   (1541 perm/sec)   p_kst 6.025124e-02   p_cons 1.226446e-03   p_joint 3.728099e-03

Joint ci ratio: 5.796710e-02	ci left: 3.626153e-03	ci right 3.843426e-03	k: 4555	n:1220000
Cons ci ratio: 1.009833e-01	ci left: 1.171299e-03	ci right 1.296662e-03	k: 1504	n:1220000
KS ci ratio: 1.401499e-02	ci left: 5.983820e-02	ci right 6.068356e-02	k: 73517	n:1220000
ALX4   1220000 perm   796 sec   (1532 perm/sec)   p_kst 6.025984e-02   p_cons 1.232787e-03   p_joint 3.733607e-03

Joint ci ratio: 5.775841e-02	ci left: 3.623113e-03	ci right 3.839397e-03	k: 4588	n:1230000
Cons ci ratio: 1.006163e-01	ci left: 1.170494e-03	ci right 1.295288e-03	k: 1515	n:1230000
KS ci ratio: 1.396237e-02	ci left: 5.980378e-02	ci right 6.064545e-02	k: 74075	n:1230000
ALX4   1230000 perm   808 sec   (1523 perm/sec)   p_kst 6.022358e-02   p_cons 1.231707e-03   p_joint 3.730081e-03

Joint ci ratio: 5.758322e-02	ci left: 3.616149e-03	ci right 3.831340e-03	k: 4616	n:1240000
Cons ci ratio: 1.002862e-01	ci left: 1.168916e-03	ci right 1.293110e-03	k: 1525	n:1240000
KS ci ratio: 1.390163e-02	ci left: 5.984065e-02	ci right 6.067915e-02	k: 74721	n:1240000
ALX4   1240000 perm   819 sec   (1514 perm/sec)   p_kst 6.025887e-02   p_cons 1.229839e-03   p_joint 3.722581e-03

Joint ci ratio: 5.735387e-02	ci left: 3.616395e-03	ci right 3.830715e-03	k: 4653	n:1250000
Cons ci ratio: 9.999191e-02	ci left: 1.166584e-03	ci right 1.290145e-03	k: 1534	n:1250000
KS ci ratio: 1.384489e-02	ci left: 5.985063e-02	ci right 6.068581e-02	k: 75334	n:1250000
ALX4   1250000 perm   830 sec   (1505 perm/sec)   p_kst 6.026720e-02   p_cons 1.227200e-03   p_joint 3.722400e-03

Outputting figure to mutsig2_images.part000000000007/ALX4.3_1252_1250000_0.060267_0.0012272_0.0037224.png
                gene_name: ALX4
               theta_stop: 0.100 
                    nperm: 1250000 
                     p_ks: 0.060 
        ci_ks_bounds_left: 0.060 
       ci_ks_bounds_right: 0.061 
                   p_cons: 0.0012 
      ci_cons_bounds_left: 0.0012 
     ci_cons_bounds_right: 0.0013 
                  p_joint: 0.0037 
     ci_joint_bounds_left: 0.0036 
    ci_joint_bounds_right: 0.0038 

Current progress: 54 percent done.
AMICA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.752138e-02	ci left: 6.604841e-01	ci right 6.790169e-01	k: 6698	n:10000
Cons ci ratio: 2.327743e-02	ci left: 7.305765e-01	ci right 7.478839e-01	k: 7393	n:10000
KS ci ratio: 4.495916e-02	ci left: 4.220628e-01	ci right 4.415769e-01	k: 4318	n:10000
AMICA1   10000 perm   2 sec   (6076 perm/sec)   p_kst 4.318000e-01   p_cons 7.393000e-01   p_joint 6.698000e-01

Outputting figure to mutsig2_images.part000000000007/AMICA1.3_1238_10000_0.4318_0.7393_0.6698.png
                gene_name: AMICA1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 56 percent done.
AMOTL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.850270e-02	ci left: 4.990503e-01	ci right 5.187445e-01	k: 5089	n:10000
Cons ci ratio: 3.170407e-02	ci left: 5.948373e-01	ci right 6.141018e-01	k: 6045	n:10000
KS ci ratio: 5.045670e-02	ci left: 3.667920e-01	ci right 3.858801e-01	k: 3763	n:10000
AMOTL1   10000 perm   2 sec   (5575 perm/sec)   p_kst 3.763000e-01   p_cons 6.045000e-01   p_joint 5.089000e-01

Outputting figure to mutsig2_images.part000000000007/AMOTL1.3_2923_10000_0.3763_0.6045_0.5089.png
                gene_name: AMOTL1
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 58 percent done.
AMZ1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.224355e-02	ci left: 4.527897e-01	ci right 4.724321e-01	k: 4626	n:10000
KS ci ratio: 2.864254e-02	ci left: 6.424702e-01	ci right 6.612413e-01	k: 6519	n:10000
AMZ1   10000 perm   2 sec   (6421 perm/sec)   p_kst 6.519000e-01   p_cons 4.626000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000007/AMZ1.3_1521_10000_0.6519_0.4626_1.png
                gene_name: AMZ1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 60 percent done.
ANAPC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.075338e-02	ci left: 4.706645e-01	ci right 4.903468e-01	k: 4805	n:10000
Cons ci ratio: 1.613966e-01	ci left: 5.118874e-02	ci right 6.027224e-02	k: 556	n:10000
KS ci ratio: 2.113385e-02	ci left: 7.664836e-01	ci right 7.829561e-01	k: 7748	n:10000
ANAPC4   10000 perm   2 sec   (5771 perm/sec)   p_kst 7.748000e-01   p_cons 5.560000e-02   p_joint 4.805000e-01

Joint ci ratio: 2.733119e-02	ci left: 5.000456e-01	ci right 5.139524e-01	k: 10140	n:20000
Cons ci ratio: 1.163560e-01	ci left: 5.056727e-02	ci right 5.686327e-02	k: 1073	n:20000
KS ci ratio: 1.485604e-02	ci left: 7.710147e-01	ci right 7.826048e-01	k: 15537	n:20000
ANAPC4   20000 perm   4 sec   (5138 perm/sec)   p_kst 7.768500e-01   p_cons 5.365000e-02   p_joint 5.070000e-01

Joint ci ratio: 2.473655e-02	ci left: 4.499856e-01	ci right 4.612897e-01	k: 13669	n:30000
Cons ci ratio: 9.519244e-02	ci left: 5.094770e-02	ci right 5.607254e-02	k: 1604	n:30000
KS ci ratio: 1.208382e-02	ci left: 7.734217e-01	ci right 7.828577e-01	k: 23345	n:30000
ANAPC4   30000 perm   6 sec   (4900 perm/sec)   p_kst 7.781667e-01   p_cons 5.346667e-02   p_joint 4.556333e-01

Outputting figure to mutsig2_images.part000000000007/ANAPC4.3_2539_30000_0.77817_0.053467_0.45563.png
                gene_name: ANAPC4
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.053 
      ci_cons_bounds_left: 0.051 
     ci_cons_bounds_right: 0.056 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.46 

Current progress: 62 percent done.
ANGPTL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.883815e-01	ci left: 3.757958e-02	ci right 4.549032e-02	k: 414	n:10000
Cons ci ratio: 1.356182e-01	ci left: 7.184865e-02	ci right 8.239926e-02	k: 770	n:10000
KS ci ratio: 1.030513e-01	ci left: 1.198488e-01	ci right 1.329697e-01	k: 1263	n:10000
ANGPTL3   10000 perm   2 sec   (6422 perm/sec)   p_kst 1.263000e-01   p_cons 7.700000e-02   p_joint 4.140000e-02

Joint ci ratio: 5.981036e-02	ci left: 1.714856e-01	ci right 1.821085e-01	k: 3535	n:20000
Cons ci ratio: 9.271124e-02	ci left: 7.823353e-02	ci right 8.588850e-02	k: 1640	n:20000
KS ci ratio: 7.415097e-02	ci left: 1.180354e-01	ci right 1.271746e-01	k: 2451	n:20000
ANGPTL3   20000 perm   4 sec   (5682 perm/sec)   p_kst 1.225500e-01   p_cons 8.200000e-02   p_joint 1.767500e-01

Outputting figure to mutsig2_images.part000000000007/ANGPTL3.3_1411_20000_0.12255_0.082_0.17675.png
                gene_name: ANGPTL3
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.082 
      ci_cons_bounds_left: 0.078 
     ci_cons_bounds_right: 0.086 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 64 percent done.
ANKAR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.881451e-01	ci left: 3.767505e-02	ci right 4.559480e-02	k: 415	n:10000
Cons ci ratio: 7.146083e-02	ci left: 2.229660e-01	ci right 2.395908e-01	k: 2312	n:10000
KS ci ratio: 4.090336e-01	ci left: 7.243098e-03	ci right 1.105110e-02	k: 90	n:10000
ANKAR   10000 perm   2 sec   (5246 perm/sec)   p_kst 9.000000e-03   p_cons 2.312000e-01   p_joint 4.150000e-02

Joint ci ratio: 1.466316e-01	ci left: 3.196523e-02	ci right 3.707126e-02	k: 689	n:20000
Cons ci ratio: 5.050254e-02	ci left: 2.256192e-01	ci right 2.373590e-01	k: 4629	n:20000
KS ci ratio: 2.800644e-01	ci left: 8.341806e-03	ci right 1.110354e-02	k: 193	n:20000
ANKAR   20000 perm   4 sec   (4720 perm/sec)   p_kst 9.650000e-03   p_cons 2.314500e-01   p_joint 3.445000e-02

Joint ci ratio: 1.621863e-01	ci left: 1.754916e-02	ci right 2.067829e-02	k: 572	n:30000
Cons ci ratio: 4.271416e-02	ci left: 2.144962e-01	ci right 2.238916e-01	k: 6575	n:30000
KS ci ratio: 2.298730e-01	ci left: 8.496207e-03	ci right 1.073364e-02	k: 287	n:30000
ANKAR   30000 perm   7 sec   (4499 perm/sec)   p_kst 9.566667e-03   p_cons 2.191667e-01   p_joint 1.906667e-02

Joint ci ratio: 1.315229e-01	ci left: 2.029445e-02	ci right 2.317557e-02	k: 868	n:40000
Cons ci ratio: 3.680620e-02	ci left: 2.168424e-01	ci right 2.249982e-01	k: 8836	n:40000
KS ci ratio: 1.988155e-01	ci left: 8.667670e-03	ci right 1.060452e-02	k: 384	n:40000
ANKAR   40000 perm   9 sec   (4350 perm/sec)   p_kst 9.600000e-03   p_cons 2.209000e-01   p_joint 2.170000e-02

Joint ci ratio: 1.148713e-01	ci left: 2.145110e-02	ci right 2.408471e-02	k: 1137	n:50000
Cons ci ratio: 3.184059e-02	ci left: 2.289024e-01	ci right 2.363287e-01	k: 11630	n:50000
KS ci ratio: 1.765803e-01	ci left: 8.897727e-03	ci right 1.063990e-02	k: 487	n:50000
ANKAR   50000 perm   12 sec   (4237 perm/sec)   p_kst 9.740000e-03   p_cons 2.326000e-01   p_joint 2.274000e-02

Joint ci ratio: 7.863863e-02	ci left: 3.820070e-02	ci right 4.134402e-02	k: 2385	n:60000
Cons ci ratio: 2.908021e-02	ci left: 2.290583e-01	ci right 2.358343e-01	k: 13946	n:60000
KS ci ratio: 1.629752e-01	ci left: 8.771269e-03	ci right 1.034338e-02	k: 572	n:60000
ANKAR   60000 perm   14 sec   (4142 perm/sec)   p_kst 9.533333e-03   p_cons 2.324333e-01   p_joint 3.975000e-02

Joint ci ratio: 8.540793e-02	ci left: 2.796515e-02	ci right 3.047408e-02	k: 2044	n:70000
Cons ci ratio: 2.700361e-02	ci left: 2.282515e-01	ci right 2.345137e-01	k: 16196	n:70000
KS ci ratio: 1.522133e-01	ci left: 8.670912e-03	ci right 1.011305e-02	k: 656	n:70000
ANKAR   70000 perm   17 sec   (4057 perm/sec)   p_kst 9.371429e-03   p_cons 2.313714e-01   p_joint 2.920000e-02

Joint ci ratio: 6.683695e-02	ci left: 3.984545e-02	ci right 4.261295e-02	k: 3297	n:80000
Cons ci ratio: 2.523284e-02	ci left: 2.288296e-01	ci right 2.346899e-01	k: 18540	n:80000
KS ci ratio: 1.440237e-01	ci left: 8.513843e-03	ci right 9.847116e-03	k: 733	n:80000
ANKAR   80000 perm   20 sec   (3982 perm/sec)   p_kst 9.162500e-03   p_cons 2.317500e-01   p_joint 4.121250e-02

Joint ci ratio: 6.705980e-02	ci left: 3.534981e-02	ci right 3.781351e-02	k: 3291	n:90000
Cons ci ratio: 2.381921e-02	ci left: 2.285594e-01	ci right 2.340802e-01	k: 20818	n:90000
KS ci ratio: 1.354356e-01	ci left: 8.597286e-03	ci right 9.856873e-03	k: 829	n:90000
ANKAR   90000 perm   23 sec   (3914 perm/sec)   p_kst 9.211111e-03   p_cons 2.313111e-01   p_joint 3.656667e-02

Joint ci ratio: 6.294972e-02	ci left: 3.615365e-02	ci right 3.851329e-02	k: 3732	n:100000
Cons ci ratio: 2.256024e-02	ci left: 2.292770e-01	ci right 2.345185e-01	k: 23189	n:100000
KS ci ratio: 1.286421e-01	ci left: 8.607843e-03	ci right 9.800885e-03	k: 919	n:100000
ANKAR   100000 perm   26 sec   (3851 perm/sec)   p_kst 9.190000e-03   p_cons 2.318900e-01   p_joint 3.732000e-02

Joint ci ratio: 6.326261e-02	ci left: 3.265926e-02	ci right 3.480178e-02	k: 3709	n:110000
Cons ci ratio: 2.153453e-02	ci left: 2.290009e-01	ci right 2.339951e-01	k: 25464	n:110000
KS ci ratio: 1.218679e-01	ci left: 8.750001e-03	ci right 9.894276e-03	k: 1024	n:110000
ANKAR   110000 perm   29 sec   (3787 perm/sec)   p_kst 9.309091e-03   p_cons 2.314909e-01   p_joint 3.371818e-02

Joint ci ratio: 6.441021e-02	ci left: 2.897641e-02	ci right 3.091306e-02	k: 3592	n:120000
Cons ci ratio: 2.055565e-02	ci left: 2.301787e-01	ci right 2.349676e-01	k: 27908	n:120000
KS ci ratio: 1.171129e-01	ci left: 8.707988e-03	ci right 9.799260e-03	k: 1109	n:120000
ANKAR   120000 perm   32 sec   (3725 perm/sec)   p_kst 9.241667e-03   p_cons 2.325667e-01   p_joint 2.993333e-02

Joint ci ratio: 6.808978e-02	ci left: 2.401434e-02	ci right 2.571463e-02	k: 3231	n:130000
Cons ci ratio: 1.973084e-02	ci left: 2.306045e-01	ci right 2.352075e-01	k: 30277	n:130000
KS ci ratio: 1.129220e-01	ci left: 8.665698e-03	ci right 9.710217e-03	k: 1193	n:130000
ANKAR   130000 perm   35 sec   (3666 perm/sec)   p_kst 9.176923e-03   p_cons 2.329000e-01   p_joint 2.485385e-02

Joint ci ratio: 7.301755e-02	ci left: 1.943437e-02	ci right 2.091417e-02	k: 2823	n:140000
Cons ci ratio: 1.901885e-02	ci left: 2.305811e-01	ci right 2.350157e-01	k: 32591	n:140000
KS ci ratio: 1.089362e-01	ci left: 8.664797e-03	ci right 9.669976e-03	k: 1282	n:140000
ANKAR   140000 perm   39 sec   (3607 perm/sec)   p_kst 9.157143e-03   p_cons 2.327929e-01   p_joint 2.016429e-02

Joint ci ratio: 7.509876e-02	ci left: 1.716958e-02	ci right 1.851581e-02	k: 2675	n:150000
Cons ci ratio: 1.836402e-02	ci left: 2.308492e-01	ci right 2.351344e-01	k: 34948	n:150000
KS ci ratio: 1.058126e-01	ci left: 8.586673e-03	ci right 9.552447e-03	k: 1359	n:150000
ANKAR   150000 perm   42 sec   (3554 perm/sec)   p_kst 9.060000e-03   p_cons 2.329867e-01   p_joint 1.783333e-02

Joint ci ratio: 7.328337e-02	ci left: 1.692450e-02	ci right 1.821806e-02	k: 2810	n:160000
Cons ci ratio: 1.778522e-02	ci left: 2.308306e-01	ci right 2.349790e-01	k: 37264	n:160000
KS ci ratio: 1.022631e-01	ci left: 8.634405e-03	ci right 9.571013e-03	k: 1455	n:160000
ANKAR   160000 perm   46 sec   (3504 perm/sec)   p_kst 9.093750e-03   p_cons 2.329000e-01   p_joint 1.756250e-02

Joint ci ratio: 6.995583e-02	ci left: 1.750047e-02	ci right 1.877486e-02	k: 3082	n:170000
Cons ci ratio: 1.725024e-02	ci left: 2.309745e-01	ci right 2.349993e-01	k: 39607	n:170000
KS ci ratio: 9.917746e-02	ci left: 8.654048e-03	ci right 9.562811e-03	k: 1547	n:170000
ANKAR   170000 perm   49 sec   (3455 perm/sec)   p_kst 9.100000e-03   p_cons 2.329824e-01   p_joint 1.812941e-02

Outputting figure to mutsig2_images.part000000000007/ANKAR.3_4393_170000_0.0091_0.23298_0.018129.png
                gene_name: ANKAR
               theta_stop: 0.099 
                    nperm: 170000 
                     p_ks: 0.0091 
        ci_ks_bounds_left: 0.0087 
       ci_ks_bounds_right: 0.0096 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.018 
     ci_joint_bounds_left: 0.018 
    ci_joint_bounds_right: 0.019 

Current progress: 66 percent done.
ANKFY1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.124191e-01	ci left: 1.022739e-01	ci right 1.145552e-01	k: 1083	n:10000
Cons ci ratio: 1.684207e-02	ci left: 8.369418e-01	ci right 8.512571e-01	k: 8442	n:10000
KS ci ratio: 1.332907e-01	ci left: 7.427098e-02	ci right 8.497542e-02	k: 795	n:10000
ANKFY1   10000 perm   2 sec   (5315 perm/sec)   p_kst 7.950000e-02   p_cons 8.442000e-01   p_joint 1.083000e-01

Joint ci ratio: 8.522918e-02	ci left: 9.155886e-02	ci right 9.975913e-02	k: 1912	n:20000
Cons ci ratio: 1.198307e-02	ci left: 8.374275e-01	ci right 8.475727e-01	k: 16851	n:20000
KS ci ratio: 9.393256e-02	ci left: 7.632531e-02	ci right 8.389730e-02	k: 1601	n:20000
ANKFY1   20000 perm   4 sec   (4790 perm/sec)   p_kst 8.005000e-02   p_cons 8.425500e-01   p_joint 9.560000e-02

Outputting figure to mutsig2_images.part000000000007/ANKFY1.3_3705_20000_0.08005_0.84255_0.0956.png
                gene_name: ANKFY1
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.080 
        ci_ks_bounds_left: 0.076 
       ci_ks_bounds_right: 0.084 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.096 
     ci_joint_bounds_left: 0.092 
    ci_joint_bounds_right: 0.100 

Current progress: 68 percent done.
ALS2CR4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.460297e-02	ci left: 2.603270e-01	ci right 2.778077e-01	k: 2690	n:10000
KS ci ratio: 3.019958e-02	ci left: 6.179381e-01	ci right 6.369876e-01	k: 6275	n:10000
ALS2CR4   10000 perm   2 sec   (6547 perm/sec)   p_kst 6.275000e-01   p_cons 2.690000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000007/ALS2CR4.2_1297_10000_0.6275_0.269_1.png
                gene_name: ALS2CR4
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
ALS2CR8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.957621e-02	ci left: 6.276875e-01	ci right 6.466326e-01	k: 6372	n:10000
Cons ci ratio: 6.717872e-02	ci left: 2.453921e-01	ci right 2.625515e-01	k: 2539	n:10000
KS ci ratio: 1.269727e-02	ci left: 8.991872e-01	ci right 9.107756e-01	k: 9051	n:10000
ALS2CR8   10000 perm   2 sec   (6065 perm/sec)   p_kst 9.051000e-01   p_cons 2.539000e-01   p_joint 6.372000e-01

Outputting figure to mutsig2_images.part000000000007/ALS2CR8.2_2234_10000_0.9051_0.2539_0.6372.png
                gene_name: ALS2CR8
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 72 percent done.
AMAC1L3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.839503e-02	ci left: 5.004505e-01	ci right 5.201435e-01	k: 5103	n:10000
Cons ci ratio: 5.149343e-02	ci left: 3.573442e-01	ci right 3.763334e-01	k: 3668	n:10000
KS ci ratio: 8.790262e-03	ci left: 9.478349e-01	ci right 9.562992e-01	k: 9522	n:10000
AMAC1L3   10000 perm   1 sec   (6735 perm/sec)   p_kst 9.522000e-01   p_cons 3.668000e-01   p_joint 5.103000e-01

Outputting figure to mutsig2_images.part000000000007/AMAC1L3.2_1025_10000_0.9522_0.3668_0.5103.png
                gene_name: AMAC1L3
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 74 percent done.
AMACR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.675415e-02	ci left: 5.222622e-01	ci right 5.419191e-01	k: 5321	n:10000
Cons ci ratio: 1.479387e-01	ci left: 6.072801e-02	ci right 7.052689e-02	k: 655	n:10000
KS ci ratio: 2.115201e-02	ci left: 7.661798e-01	ci right 7.826601e-01	k: 7745	n:10000
AMACR   10000 perm   1 sec   (6728 perm/sec)   p_kst 7.745000e-01   p_cons 6.550000e-02   p_joint 5.321000e-01

Joint ci ratio: 3.568569e-02	ci left: 3.695295e-01	ci right 3.830065e-01	k: 7525	n:20000
Cons ci ratio: 1.049106e-01	ci left: 6.181689e-02	ci right 6.871016e-02	k: 1304	n:20000
KS ci ratio: 1.500376e-02	ci left: 7.675337e-01	ci right 7.791868e-01	k: 15468	n:20000
AMACR   20000 perm   3 sec   (5928 perm/sec)   p_kst 7.734000e-01   p_cons 6.520000e-02   p_joint 3.762500e-01

Joint ci ratio: 2.931386e-02	ci left: 3.679555e-01	ci right 3.789357e-01	k: 11203	n:30000
Cons ci ratio: 8.511445e-02	ci left: 6.321594e-02	ci right 6.886846e-02	k: 1980	n:30000
KS ci ratio: 1.226332e-02	ci left: 7.682505e-01	ci right 7.777633e-01	k: 23191	n:30000
AMACR   30000 perm   5 sec   (5637 perm/sec)   p_kst 7.730333e-01   p_cons 6.600000e-02   p_joint 3.734333e-01

Outputting figure to mutsig2_images.part000000000007/AMACR.2_1499_30000_0.77303_0.066_0.37343.png
                gene_name: AMACR
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.066 
      ci_cons_bounds_left: 0.063 
     ci_cons_bounds_right: 0.069 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.38 

Current progress: 76 percent done.
AMBRA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.457181e-02	ci left: 7.089672e-01	ci right 7.267058e-01	k: 7179	n:10000
Cons ci ratio: 1.516236e-02	ci left: 8.631486e-01	ci right 8.764352e-01	k: 8699	n:10000
KS ci ratio: 5.917331e-02	ci left: 2.958849e-01	ci right 3.140289e-01	k: 3049	n:10000
AMBRA1   10000 perm   2 sec   (5551 perm/sec)   p_kst 3.049000e-01   p_cons 8.699000e-01   p_joint 7.179000e-01

Outputting figure to mutsig2_images.part000000000007/AMBRA1.2_3699_10000_0.3049_0.8699_0.7179.png
                gene_name: AMBRA1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 78 percent done.
AMDHD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.116412e-02	ci left: 7.659773e-01	ci right 7.824627e-01	k: 7743	n:10000
Cons ci ratio: 8.467069e-02	ci left: 1.689744e-01	ci right 1.840145e-01	k: 1764	n:10000
KS ci ratio: 2.418404e-02	ci left: 7.154271e-01	ci right 7.330421e-01	k: 7243	n:10000
AMDHD2   10000 perm   2 sec   (6418 perm/sec)   p_kst 7.243000e-01   p_cons 1.764000e-01   p_joint 7.743000e-01

Outputting figure to mutsig2_images.part000000000007/AMDHD2.2_1867_10000_0.7243_0.1764_0.7743.png
                gene_name: AMDHD2
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 80 percent done.
AMELX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.143635e-02	ci left: 7.614214e-01	ci right 7.780212e-01	k: 7698	n:10000
Cons ci ratio: 4.515190e-03	ci left: 9.845824e-01	ci right 9.891274e-01	k: 9870	n:10000
KS ci ratio: 3.118942e-02	ci left: 6.026690e-01	ci right 6.218656e-01	k: 6123	n:10000
AMELX   10000 perm   1 sec   (7022 perm/sec)   p_kst 6.123000e-01   p_cons 9.870000e-01   p_joint 7.698000e-01

Outputting figure to mutsig2_images.part000000000007/AMELX.2_642_10000_0.6123_0.987_0.7698.png
                gene_name: AMELX
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 82 percent done.
AMOTL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.355961e-02	ci left: 5.672458e-01	ci right 5.867093e-01	k: 5770	n:10000
KS ci ratio: 2.861100e-02	ci left: 6.429732e-01	ci right 6.617380e-01	k: 6524	n:10000
AMOTL2   10000 perm   2 sec   (6125 perm/sec)   p_kst 6.524000e-01   p_cons 5.770000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000007/AMOTL2.2_2379_10000_0.6524_0.577_1.png
                gene_name: AMOTL2
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
AMTN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.182125e-02	ci left: 4.577814e-01	ci right 4.774375e-01	k: 4676	n:10000
Cons ci ratio: 6.485020e-02	ci left: 2.588428e-01	ci right 2.762928e-01	k: 2675	n:10000
KS ci ratio: 3.441962e-02	ci left: 5.548147e-01	ci right 5.743477e-01	k: 5646	n:10000
AMTN   10000 perm   1 sec   (7020 perm/sec)   p_kst 5.646000e-01   p_cons 2.675000e-01   p_joint 4.676000e-01

Outputting figure to mutsig2_images.part000000000007/AMTN.2_662_10000_0.5646_0.2675_0.4676.png
                gene_name: AMTN
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 86 percent done.
ANGEL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.700582e-02	ci left: 5.188592e-01	ci right 5.385241e-01	k: 5287	n:10000
Cons ci ratio: 1.562101e-02	ci left: 8.561050e-01	ci right 8.696829e-01	k: 8630	n:10000
KS ci ratio: 5.922919e-02	ci left: 2.954883e-01	ci right 3.136257e-01	k: 3045	n:10000
ANGEL1   10000 perm   2 sec   (6407 perm/sec)   p_kst 3.045000e-01   p_cons 8.630000e-01   p_joint 5.287000e-01

Outputting figure to mutsig2_images.part000000000007/ANGEL1.2_2053_10000_0.3045_0.863_0.5287.png
                gene_name: ANGEL1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 88 percent done.
ANGPT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.101379e-02	ci left: 9.216228e-01	ci right 9.319269e-01	k: 9269	n:10000
Cons ci ratio: 1.493392e-02	ci left: 8.666216e-01	ci right 8.797602e-01	k: 8733	n:10000
KS ci ratio: 4.312042e-02	ci left: 4.426097e-01	ci right 4.622180e-01	k: 4524	n:10000
ANGPT2   10000 perm   2 sec   (5856 perm/sec)   p_kst 4.524000e-01   p_cons 8.733000e-01   p_joint 9.269000e-01

Outputting figure to mutsig2_images.part000000000007/ANGPT2.2_1527_10000_0.4524_0.8733_0.9269.png
                gene_name: ANGPT2
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 90 percent done.
ANGPTL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.082627e-01	ci left: 1.095910e-01	ci right 1.222338e-01	k: 1158	n:10000
KS ci ratio: 3.438464e-02	ci left: 5.553158e-01	ci right 5.748463e-01	k: 5651	n:10000
ANGPTL1   10000 perm   2 sec   (5203 perm/sec)   p_kst 5.651000e-01   p_cons 1.158000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 7.649875e-02	ci left: 1.115930e-01	ci right 1.205189e-01	k: 2320	n:20000
KS ci ratio: 2.452850e-02	ci left: 5.538885e-01	ci right 5.676938e-01	k: 11216	n:20000
ANGPTL1   20000 perm   4 sec   (5156 perm/sec)   p_kst 5.608000e-01   p_cons 1.160000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000007/ANGPTL1.2_1492_20000_0.5608_0.116_1.png
                gene_name: ANGPTL1
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
ANKH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.341162e-03	ci left: 9.624696e-01	ci right 9.696556e-01	k: 9662	n:10000
Cons ci ratio: 2.611385e-02	ci left: 6.834513e-01	ci right 7.016364e-01	k: 6926	n:10000
KS ci ratio: 1.158000e-02	ci left: 9.143035e-01	ci right 9.250505e-01	k: 9198	n:10000
ANKH   10000 perm   2 sec   (6063 perm/sec)   p_kst 9.198000e-01   p_cons 6.926000e-01   p_joint 9.662000e-01

Outputting figure to mutsig2_images.part000000000007/ANKH.2_1527_10000_0.9198_0.6926_0.9662.png
                gene_name: ANKH
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 94 percent done.
ANKK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.029037e-02	ci left: 7.805653e-01	ci right 7.966662e-01	k: 7887	n:10000
Cons ci ratio: 9.508989e-03	ci left: 9.398315e-01	ci right 9.489074e-01	k: 9445	n:10000
KS ci ratio: 1.403068e-01	ci left: 6.729912e-02	ci right 7.755164e-02	k: 723	n:10000
ANKK1   10000 perm   2 sec   (6228 perm/sec)   p_kst 7.230000e-02   p_cons 9.445000e-01   p_joint 7.887000e-01

Joint ci ratio: 2.500501e-02	ci left: 5.443750e-01	ci right 5.582101e-01	k: 11026	n:20000
Cons ci ratio: 7.506856e-03	ci left: 9.281157e-01	ci right 9.351581e-01	k: 18634	n:20000
KS ci ratio: 1.009534e-01	ci left: 6.655043e-02	ci right 7.367517e-02	k: 1401	n:20000
ANKK1   20000 perm   4 sec   (5491 perm/sec)   p_kst 7.005000e-02   p_cons 9.317000e-01   p_joint 5.513000e-01

Joint ci ratio: 1.378716e-02	ci left: 7.242669e-01	ci right 7.343553e-01	k: 21880	n:30000
Cons ci ratio: 6.148014e-03	ci left: 9.283791e-01	ci right 9.341371e-01	k: 27939	n:30000
KS ci ratio: 8.255541e-02	ci left: 6.700709e-02	ci right 7.280987e-02	k: 2096	n:30000
ANKK1   30000 perm   6 sec   (5222 perm/sec)   p_kst 6.986667e-02   p_cons 9.313000e-01   p_joint 7.293333e-01

Outputting figure to mutsig2_images.part000000000007/ANKK1.2_2330_30000_0.069867_0.9313_0.72933.png
                gene_name: ANKK1
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.070 
        ci_ks_bounds_left: 0.067 
       ci_ks_bounds_right: 0.073 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 96 percent done.
ANKMY1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.255332e-02	ci left: 7.427054e-01	ci right 7.597480e-01	k: 7513	n:10000
KS ci ratio: 4.004187e-02	ci left: 4.794567e-01	ci right 4.991495e-01	k: 4893	n:10000
ANKMY1   10000 perm   2 sec   (5751 perm/sec)   p_kst 4.893000e-01   p_cons 7.513000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000007/ANKMY1.2_3161_10000_0.4893_0.7513_1.png
                gene_name: ANKMY1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
ANKMY2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.802118e-02	ci left: 3.042144e-01	ci right 3.224944e-01	k: 3133	n:10000
Cons ci ratio: 3.591382e-02	ci left: 5.337760e-01	ci right 5.533986e-01	k: 5436	n:10000
KS ci ratio: 8.211153e-02	ci left: 1.779240e-01	ci right 1.932596e-01	k: 1855	n:10000
ANKMY2   10000 perm   2 sec   (6593 perm/sec)   p_kst 1.855000e-01   p_cons 5.436000e-01   p_joint 3.133000e-01

Outputting figure to mutsig2_images.part000000000007/ANKMY2.2_1366_10000_0.1855_0.5436_0.3133.png
                gene_name: ANKMY2
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000007
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 7 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1557>
Subject: Job 8003819: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1557>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000008> was used as the working directory.
Started at Sun Nov 11 15:03:25 2012
Results reported at Sun Nov 11 15:15:33 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000008.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000008.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 8  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000008.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    851.30 sec.
    Max Memory :      4755 MB
    Max Swap   :      7070 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
8
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 8
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 8: processing genes 634 - 724
Calculating significance of each gene.
Using projection method.
634	ANKRD10	7.967897e-01
635	ANKRD11	1
636	ANKRD12	8.561187e-01
637	ANKRD13A	8.955172e-01
638	ANKRD13B	3.352403e-01
639	ANKRD13C	4.730332e-01
640	ANKRD13D	6.356198e-01
641	ANKRD16	6.577867e-01
642	ANKRD17	1
643	ANKRD2	1
644	ANKRD20A1	1
645	ANKRD20A4	1
646	ANKRD22	3.606058e-01
647	ANKRD23	1
648	ANKRD24	6.717824e-01
649	ANKRD26	7.687023e-01
650	ANKRD27	1
651	ANKRD28	1
652	ANKRD29	1
653	ANKRD30A	3.794739e-01
654	ANKRD30B	1
655	ANKRD32	2.585398e-01
656	ANKRD33	1
657	ANKRD34A	1.077968e-02
658	ANKRD34B	4.348069e-02
659	ANKRD35	3.728851e-01
660	ANKRD36	9.070181e-01
661	ANKRD36B	4.181154e-01
662	ANKRD37	1
663	ANKRD39	1
664	ANKRD40	7.494399e-01
665	ANKRD42	1
666	ANKRD44	1
667	ANKRD45	1
668	ANKRD46	5.143068e-02
669	ANKRD49	1
670	ANKRD5	1
671	ANKRD50	4.514637e-02
672	ANKRD52	7.327300e-01
673	ANKRD53	6.879302e-01
674	ANKRD54	1
675	ANKRD55	8.793746e-01
676	ANKRD56	4.472385e-01
677	ANKRD57	1.923600e-01
678	ANKRD6	1
679	ANKRD7	1.355562e-02
680	ANKS1A	6.841484e-01
681	ANKS1B	5.590744e-01
682	ANKS3	7.607073e-01
683	ANKS4B	4.880725e-01
684	ANKS6	5.572075e-01
685	ANKZF1	9.449486e-01
686	ANLN	8.618653e-01
687	ANO1	2.775464e-01
688	ANO10	6.885724e-01
689	ANO2	9.725645e-01
690	ANO3	6.671297e-01
691	ANO4	3.691454e-02
692	ANO5	1
693	ANO6	4.735956e-01
694	ANO7	1
695	ANO8	2.495670e-01
696	ANO9	8.724441e-01
697	ANP32A	5.351648e-01
698	ANP32B	3.130478e-01
699	ANP32C	1.389111e-01
700	ANP32D	3.726861e-01
701	ANP32E	1
702	ANPEP	3.016299e-01
703	ANTXR1	4.145482e-01
704	ANTXR2	3.754400e-01
705	ANUBL1	6.032833e-01
706	ANXA1	6.022694e-01
707	ANXA10	6.327584e-01
708	ANXA11	4.055191e-01
709	ANXA13	5.166781e-01
710	ANXA2	1
711	ANXA3	1
712	ANXA4	6.299063e-01
713	ANXA5	1.657656e-01
714	ANXA6	1.919742e-01
715	ANXA7	7.848894e-01
716	ANXA9	8.121348e-01
717	AOAH	1.246500e-01
718	AOC2	1
719	AOC3	8.939077e-01
720	AOX1	3.006103e-02
721	AP1AR	1
722	AP1B1	1
723	AP1G1	9.055439e-01
724	AP1G2	9.676084e-01
Done

Running MutSig 2:
Scatter job 8: processing genes 634 - 724
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ANKRD30A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.269655e-02	ci left: 4.474996e-01	ci right 4.671253e-01	k: 4573	n:10000
Cons ci ratio: 1.100567e-02	ci left: 9.217260e-01	ci right 9.320237e-01	k: 9270	n:10000
KS ci ratio: 6.585772e-02	ci left: 2.529073e-01	ci right 2.702318e-01	k: 2615	n:10000
ANKRD30A   10000 perm   3 sec   (3087 perm/sec)   p_kst 2.615000e-01   p_cons 9.270000e-01   p_joint 4.573000e-01

Outputting figure to mutsig2_images.part000000000008/ANKRD30A.25_4166_10000_0.2615_0.927_0.4573.png
                gene_name: ANKRD30A
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 2 percent done.
ANKS1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.443362e-02	ci left: 5.546142e-01	ci right 5.741482e-01	k: 5644	n:10000
Cons ci ratio: 3.443362e-02	ci left: 5.546142e-01	ci right 5.741482e-01	k: 5644	n:10000
KS ci ratio: 4.345259e-02	ci left: 4.388183e-01	ci right 4.584117e-01	k: 4486	n:10000
ANKS1B   10000 perm   2 sec   (4026 perm/sec)   p_kst 4.486000e-01   p_cons 5.644000e-01   p_joint 5.644000e-01

Outputting figure to mutsig2_images.part000000000008/ANKS1B.13_4139_10000_0.4486_0.5644_0.5644.png
                gene_name: ANKS1B
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 4 percent done.
AOX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.769670e-02	ci left: 2.425253e-01	ci right 2.596199e-01	k: 2510	n:10000
Cons ci ratio: 2.736601e-02	ci left: 6.630012e-01	ci right 6.814983e-01	k: 6723	n:10000
KS ci ratio: 1.038047e-01	ci left: 1.182847e-01	ci right 1.313348e-01	k: 1247	n:10000
AOX1   10000 perm   2 sec   (4288 perm/sec)   p_kst 1.247000e-01   p_cons 6.723000e-01   p_joint 2.510000e-01

Joint ci ratio: 5.753960e-02	ci left: 1.829024e-01	ci right 1.937884e-01	k: 3766	n:20000
Cons ci ratio: 1.900979e-02	ci left: 6.735848e-01	ci right 6.865628e-01	k: 13602	n:20000
KS ci ratio: 7.246001e-02	ci left: 1.230054e-01	ci right 1.323032e-01	k: 2552	n:20000
AOX1   20000 perm   5 sec   (3821 perm/sec)   p_kst 1.276000e-01   p_cons 6.801000e-01   p_joint 1.883000e-01

Outputting figure to mutsig2_images.part000000000008/AOX1.13_4157_20000_0.1276_0.6801_0.1883.png
                gene_name: AOX1
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 6 percent done.
ANO4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.209473e-02	ci left: 7.503916e-01	ci right 7.672574e-01	k: 7589	n:10000
Cons ci ratio: 2.679656e-02	ci left: 6.722668e-01	ci right 6.906274e-01	k: 6815	n:10000
KS ci ratio: 3.169081e-02	ci left: 5.950381e-01	ci right 6.143009e-01	k: 6047	n:10000
ANO4   10000 perm   3 sec   (3996 perm/sec)   p_kst 6.047000e-01   p_cons 6.815000e-01   p_joint 7.589000e-01

Outputting figure to mutsig2_images.part000000000008/ANO4.12_2863_10000_0.6047_0.6815_0.7589.png
                gene_name: ANO4
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 8 percent done.
ANKRD26
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.253337e-02	ci left: 2.731952e-01	ci right 2.909319e-01	k: 2820	n:10000
Cons ci ratio: 8.117314e-02	ci left: 1.813680e-01	ci right 1.968136e-01	k: 1890	n:10000
KS ci ratio: 2.234215e-02	ci left: 7.462447e-01	ci right 7.632067e-01	k: 7548	n:10000
ANKRD26   10000 perm   3 sec   (3560 perm/sec)   p_kst 7.548000e-01   p_cons 1.890000e-01   p_joint 2.820000e-01

Outputting figure to mutsig2_images.part000000000008/ANKRD26.10_5269_10000_0.7548_0.189_0.282.png
                gene_name: ANKRD26
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 10 percent done.
ANKRD50
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.814885e-02	ci left: 1.577733e-01	ci right 1.724223e-01	k: 1650	n:10000
Cons ci ratio: 5.825115e-02	ci left: 3.025284e-01	ci right 3.207814e-01	k: 3116	n:10000
KS ci ratio: 1.314164e-01	ci left: 7.630693e-02	ci right 8.713821e-02	k: 816	n:10000
ANKRD50   10000 perm   3 sec   (3808 perm/sec)   p_kst 8.160000e-02   p_cons 3.116000e-01   p_joint 1.650000e-01

Joint ci ratio: 7.476036e-02	ci left: 1.163138e-01	ci right 1.253968e-01	k: 2416	n:20000
Cons ci ratio: 4.090366e-02	ci left: 3.082165e-01	ci right 3.211374e-01	k: 6293	n:20000
KS ci ratio: 9.428489e-02	ci left: 7.578721e-02	ci right 8.333556e-02	k: 1590	n:20000
ANKRD50   20000 perm   6 sec   (3515 perm/sec)   p_kst 7.950000e-02   p_cons 3.146500e-01   p_joint 1.208000e-01

Outputting figure to mutsig2_images.part000000000008/ANKRD50.10_4302_20000_0.0795_0.31465_0.1208.png
                gene_name: ANKRD50
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.080 
        ci_ks_bounds_left: 0.076 
       ci_ks_bounds_right: 0.083 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 12 percent done.
ANO5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.291093e-02	ci left: 5.767739e-01	ci right 5.961757e-01	k: 5865	n:10000
Cons ci ratio: 5.513094e-02	ci left: 3.264433e-01	ci right 3.450525e-01	k: 3357	n:10000
KS ci ratio: 3.557503e-02	ci left: 5.384831e-01	ci right 5.580887e-01	k: 5483	n:10000
ANO5   10000 perm   2 sec   (4721 perm/sec)   p_kst 5.483000e-01   p_cons 3.357000e-01   p_joint 5.865000e-01

Outputting figure to mutsig2_images.part000000000008/ANO5.10_2830_10000_0.5483_0.3357_0.5865.png
                gene_name: ANO5
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 14 percent done.
ANO3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.459463e-02	ci left: 4.260512e-01	ci right 4.455862e-01	k: 4358	n:10000
Cons ci ratio: 7.446075e-02	ci left: 2.088557e-01	ci right 2.251095e-01	k: 2169	n:10000
KS ci ratio: 3.136703e-02	ci left: 5.999577e-01	ci right 6.191784e-01	k: 6096	n:10000
ANO3   10000 perm   2 sec   (4417 perm/sec)   p_kst 6.096000e-01   p_cons 2.169000e-01   p_joint 4.358000e-01

Outputting figure to mutsig2_images.part000000000008/ANO3.9_3054_10000_0.6096_0.2169_0.4358.png
                gene_name: ANO3
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 16 percent done.
ANPEP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.236221e-02	ci left: 9.038097e-01	ci right 9.151504e-01	k: 9096	n:10000
Cons ci ratio: 1.936165e-02	ci left: 7.959800e-01	ci right 8.116426e-01	k: 8039	n:10000
KS ci ratio: 3.543166e-02	ci left: 5.404864e-01	ci right 5.600843e-01	k: 5503	n:10000
ANPEP   10000 perm   2 sec   (5213 perm/sec)   p_kst 5.503000e-01   p_cons 8.039000e-01   p_joint 9.096000e-01

Outputting figure to mutsig2_images.part000000000008/ANPEP.8_2984_10000_0.5503_0.8039_0.9096.png
                gene_name: ANPEP
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.92 

Current progress: 18 percent done.
ANKRD12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.808752e-03	ci left: 9.673099e-01	ci right 9.740122e-01	k: 9708	n:10000
KS ci ratio: 1.150142e-02	ci left: 9.153336e-01	ci right 9.260198e-01	k: 9208	n:10000
ANKRD12   10000 perm   3 sec   (3666 perm/sec)   p_kst 9.208000e-01   p_cons 9.708000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000008/ANKRD12.7_6237_10000_0.9208_0.9708_1.png
                gene_name: ANKRD12
               theta_stop: 0.012 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 20 percent done.
ANO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.343015e-01	ci left: 7.320496e-02	ci right 8.384211e-02	k: 784	n:10000
Cons ci ratio: 7.521376e-02	ci left: 2.055028e-01	ci right 2.216644e-01	k: 2135	n:10000
KS ci ratio: 1.631092e-01	ci left: 5.013112e-02	ci right 5.913054e-02	k: 545	n:10000
ANO1   10000 perm   2 sec   (5259 perm/sec)   p_kst 5.450000e-02   p_cons 2.135000e-01   p_joint 7.840000e-02

Joint ci ratio: 9.939914e-02	ci left: 6.855270e-02	ci right 7.577228e-02	k: 1442	n:20000
Cons ci ratio: 5.142086e-02	ci left: 2.193271e-01	ci right 2.309529e-01	k: 4502	n:20000
KS ci ratio: 1.147833e-01	ci left: 5.192892e-02	ci right 5.830119e-02	k: 1101	n:20000
ANO1   20000 perm   4 sec   (4632 perm/sec)   p_kst 5.505000e-02   p_cons 2.251000e-01   p_joint 7.210000e-02

Joint ci ratio: 8.833296e-02	ci left: 5.887260e-02	ci right 6.434601e-02	k: 1847	n:30000
Cons ci ratio: 4.306662e-02	ci left: 2.117181e-01	ci right 2.210702e-01	k: 6491	n:30000
KS ci ratio: 9.813429e-02	ci left: 4.801652e-02	ci right 5.300432e-02	k: 1514	n:30000
ANO1   30000 perm   7 sec   (4418 perm/sec)   p_kst 5.046667e-02   p_cons 2.163667e-01   p_joint 6.156667e-02

Outputting figure to mutsig2_images.part000000000008/ANO1.7_3065_30000_0.050467_0.21637_0.061567.png
                gene_name: ANO1
               theta_stop: 0.098 
                    nperm: 30000 
                     p_ks: 0.050 
        ci_ks_bounds_left: 0.048 
       ci_ks_bounds_right: 0.053 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.062 
     ci_joint_bounds_left: 0.059 
    ci_joint_bounds_right: 0.064 

Current progress: 22 percent done.
ANKRD17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.056065e-02	ci left: 9.273022e-01	ci right 9.372442e-01	k: 9324	n:10000
KS ci ratio: 5.918697e-03	ci left: 9.747193e-01	ci right 9.805979e-01	k: 9778	n:10000
ANKRD17   10000 perm   3 sec   (3314 perm/sec)   p_kst 9.778000e-01   p_cons 9.324000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000008/ANKRD17.6_7948_10000_0.9778_0.9324_1.png
                gene_name: ANKRD17
               theta_stop: 0.011 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 24 percent done.
ANKRD34A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.777008e-02	ci left: 5.086527e-01	ci right 5.283365e-01	k: 5185	n:10000
Cons ci ratio: 3.356648e-02	ci left: 5.671455e-01	ci right 5.866096e-01	k: 5769	n:10000
KS ci ratio: 5.174931e-02	ci left: 3.550575e-01	ci right 3.740215e-01	k: 3645	n:10000
ANKRD34A   10000 perm   2 sec   (5669 perm/sec)   p_kst 3.645000e-01   p_cons 5.769000e-01   p_joint 5.185000e-01

Outputting figure to mutsig2_images.part000000000008/ANKRD34A.6_1495_10000_0.3645_0.5769_0.5185.png
                gene_name: ANKRD34A
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 27 percent done.
ANKRD35
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.190635e-02	ci left: 2.772555e-01	ci right 2.950692e-01	k: 2861	n:10000
Cons ci ratio: 4.448599e-02	ci left: 4.272478e-01	ci right 4.467889e-01	k: 4370	n:10000
KS ci ratio: 8.138550e-02	ci left: 1.805807e-01	ci right 1.960013e-01	k: 1882	n:10000
ANKRD35   10000 perm   2 sec   (5314 perm/sec)   p_kst 1.882000e-01   p_cons 4.370000e-01   p_joint 2.861000e-01

Outputting figure to mutsig2_images.part000000000008/ANKRD35.6_3058_10000_0.1882_0.437_0.2861.png
                gene_name: ANKRD35
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 29 percent done.
ANKS1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.551626e-02	ci left: 3.233656e-01	ci right 3.419320e-01	k: 3326	n:10000
Cons ci ratio: 1.335882e-02	ci left: 8.898512e-01	ci right 9.019170e-01	k: 8960	n:10000
KS ci ratio: 8.327051e-02	ci left: 1.737925e-01	ci right 1.889935e-01	k: 1813	n:10000
ANKS1A   10000 perm   2 sec   (4562 perm/sec)   p_kst 1.813000e-01   p_cons 8.960000e-01   p_joint 3.326000e-01

Outputting figure to mutsig2_images.part000000000008/ANKS1A.6_3501_10000_0.1813_0.896_0.3326.png
                gene_name: ANKS1A
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 31 percent done.
ANO2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.445485e-01	ci left: 6.352868e-02	ci right 7.352445e-02	k: 684	n:10000
Cons ci ratio: 9.405044e-02	ci left: 1.409954e-01	ci right 1.550103e-01	k: 1479	n:10000
KS ci ratio: 1.851468e-01	ci left: 3.891660e-02	ci right 4.695241e-02	k: 428	n:10000
ANO2   10000 perm   2 sec   (4964 perm/sec)   p_kst 4.280000e-02   p_cons 1.479000e-01   p_joint 6.840000e-02

Joint ci ratio: 1.362337e-01	ci left: 3.703607e-02	ci right 4.249877e-02	k: 794	n:20000
Cons ci ratio: 6.965628e-02	ci left: 1.319178e-01	ci right 1.414881e-01	k: 2733	n:20000
KS ci ratio: 1.332927e-01	ci left: 3.868094e-02	ci right 4.425337e-02	k: 828	n:20000
ANO2   20000 perm   4 sec   (4447 perm/sec)   p_kst 4.140000e-02   p_cons 1.366500e-01   p_joint 3.970000e-02

Joint ci ratio: 1.079984e-01	ci left: 3.979041e-02	ci right 4.436547e-02	k: 1261	n:30000
Cons ci ratio: 5.690659e-02	ci left: 1.326666e-01	ci right 1.404705e-01	k: 4096	n:30000
KS ci ratio: 1.086744e-01	ci left: 3.930342e-02	ci right 4.385257e-02	k: 1246	n:30000
ANO2   30000 perm   7 sec   (4222 perm/sec)   p_kst 4.153333e-02   p_cons 1.365333e-01   p_joint 4.203333e-02

Joint ci ratio: 8.428630e-02	ci left: 4.913371e-02	ci right 5.348172e-02	k: 2051	n:40000
Cons ci ratio: 4.952269e-02	ci left: 1.320610e-01	ci right 1.387920e-01	k: 5416	n:40000
KS ci ratio: 9.360719e-02	ci left: 4.003064e-02	ci right 4.398620e-02	k: 1679	n:40000
ANO2   40000 perm   10 sec   (4100 perm/sec)   p_kst 4.197500e-02   p_cons 1.354000e-01   p_joint 5.127500e-02

Outputting figure to mutsig2_images.part000000000008/ANO2.6_3101_40000_0.041975_0.1354_0.051275.png
                gene_name: ANO2
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.042 
        ci_ks_bounds_left: 0.040 
       ci_ks_bounds_right: 0.044 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.051 
     ci_joint_bounds_left: 0.049 
    ci_joint_bounds_right: 0.053 

Current progress: 33 percent done.
ANKRD11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.031471e-02	ci left: 7.801599e-01	ci right 7.962719e-01	k: 7883	n:10000
KS ci ratio: 2.089156e-02	ci left: 7.705345e-01	ci right 7.869028e-01	k: 7788	n:10000
ANKRD11   10000 perm   3 sec   (3157 perm/sec)   p_kst 7.788000e-01   p_cons 7.883000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000008/ANKRD11.5_8036_10000_0.7788_0.7883_1.png
                gene_name: ANKRD11
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 35 percent done.
ANKRD34B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.048895e-02	ci left: 3.664936e-01	ci right 3.855787e-01	k: 3760	n:10000
Cons ci ratio: 1.372124e-02	ci left: 8.846253e-01	ci right 8.969460e-01	k: 8909	n:10000
KS ci ratio: 8.241153e-02	ci left: 1.768418e-01	ci right 1.921425e-01	k: 1844	n:10000
ANKRD34B   10000 perm   2 sec   (5602 perm/sec)   p_kst 1.844000e-01   p_cons 8.909000e-01   p_joint 3.760000e-01

Outputting figure to mutsig2_images.part000000000008/ANKRD34B.5_1549_10000_0.1844_0.8909_0.376.png
                gene_name: ANKRD34B
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 37 percent done.
ANO8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.476387e-02	ci left: 5.499041e-01	ci right 5.694611e-01	k: 5597	n:10000
Cons ci ratio: 5.052124e-02	ci left: 3.661952e-01	ci right 3.852773e-01	k: 3757	n:10000
KS ci ratio: 2.969783e-02	ci left: 6.257775e-01	ci right 6.447437e-01	k: 6353	n:10000
ANO8   10000 perm   2 sec   (4353 perm/sec)   p_kst 6.353000e-01   p_cons 3.757000e-01   p_joint 5.597000e-01

Outputting figure to mutsig2_images.part000000000008/ANO8.5_3771_10000_0.6353_0.3757_0.5597.png
                gene_name: ANO8
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 39 percent done.
AOAH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.185010e-02	ci left: 5.926288e-01	ci right 6.119116e-01	k: 6023	n:10000
Cons ci ratio: 8.112025e-02	ci left: 1.815648e-01	ci right 1.970166e-01	k: 1892	n:10000
KS ci ratio: 4.034749e-02	ci left: 4.756597e-01	ci right 4.953487e-01	k: 4855	n:10000
AOAH   10000 perm   2 sec   (5035 perm/sec)   p_kst 4.855000e-01   p_cons 1.892000e-01   p_joint 6.023000e-01

Outputting figure to mutsig2_images.part000000000008/AOAH.5_2153_10000_0.4855_0.1892_0.6023.png
                gene_name: AOAH
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 41 percent done.
ANKRD7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.689535e-02	ci left: 6.706551e-01	ci right 6.890400e-01	k: 6799	n:10000
KS ci ratio: 8.644727e-03	ci left: 9.493973e-01	ci right 9.577359e-01	k: 9537	n:10000
ANKRD7   10000 perm   2 sec   (6179 perm/sec)   p_kst 9.537000e-01   p_cons 6.799000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000008/ANKRD7.4_789_10000_0.9537_0.6799_1.png
                gene_name: ANKRD7
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 43 percent done.
ANO6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.178706e-02	ci left: 1.791047e-01	ci right 1.944782e-01	k: 1867	n:10000
Cons ci ratio: 1.668597e-01	ci left: 4.792139e-02	ci right 5.674170e-02	k: 522	n:10000
KS ci ratio: 2.753382e-02	ci left: 6.602828e-01	ci right 6.788183e-01	k: 6696	n:10000
ANO6   10000 perm   2 sec   (5176 perm/sec)   p_kst 6.696000e-01   p_cons 5.220000e-02   p_joint 1.867000e-01

Joint ci ratio: 5.242865e-02	ci left: 2.126902e-01	ci right 2.241917e-01	k: 4368	n:20000
Cons ci ratio: 1.130563e-01	ci left: 5.348580e-02	ci right 5.994383e-02	k: 1133	n:20000
KS ci ratio: 1.961985e-02	ci left: 6.596157e-01	ci right 6.727360e-01	k: 13324	n:20000
ANO6   20000 perm   4 sec   (4543 perm/sec)   p_kst 6.662000e-01   p_cons 5.665000e-02   p_joint 2.184000e-01

Joint ci ratio: 4.183924e-02	ci left: 2.216081e-01	ci right 2.311116e-01	k: 6790	n:30000
Cons ci ratio: 9.315558e-02	ci left: 5.313126e-02	ci right 5.835519e-02	k: 1671	n:30000
KS ci ratio: 1.604616e-02	ci left: 6.600950e-01	ci right 6.708062e-01	k: 19964	n:30000
ANO6   30000 perm   7 sec   (4336 perm/sec)   p_kst 6.654667e-01   p_cons 5.570000e-02   p_joint 2.263333e-01

Outputting figure to mutsig2_images.part000000000008/ANO6.4_3101_30000_0.66547_0.0557_0.22633.png
                gene_name: ANO6
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.056 
      ci_cons_bounds_left: 0.053 
     ci_cons_bounds_right: 0.058 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 45 percent done.
ANXA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.787322e-02	ci left: 3.053055e-01	ci right 3.236027e-01	k: 3144	n:10000
Cons ci ratio: 3.361463e-02	ci left: 5.664436e-01	ci right 5.859120e-01	k: 5762	n:10000
KS ci ratio: 7.839804e-02	ci left: 1.920999e-01	ci right 2.078753e-01	k: 1999	n:10000
ANXA6   10000 perm   2 sec   (5224 perm/sec)   p_kst 1.999000e-01   p_cons 5.762000e-01   p_joint 3.144000e-01

Outputting figure to mutsig2_images.part000000000008/ANXA6.4_2122_10000_0.1999_0.5762_0.3144.png
                gene_name: ANXA6
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 47 percent done.
ANKRD13B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.281241e-02	ci left: 2.714129e-01	ci right 2.891153e-01	k: 2802	n:10000
Cons ci ratio: 2.098973e-01	ci left: 3.015459e-02	ci right 3.732038e-02	k: 336	n:10000
KS ci ratio: 7.476885e-02	ci left: 2.074750e-01	ci right 2.236910e-01	k: 2155	n:10000
ANKRD13B   10000 perm   2 sec   (5705 perm/sec)   p_kst 2.155000e-01   p_cons 3.360000e-02   p_joint 2.802000e-01

Joint ci ratio: 6.987848e-02	ci left: 1.311789e-01	ci right 1.407272e-01	k: 2718	n:20000
Cons ci ratio: 1.545824e-01	ci left: 2.873760e-02	ci right 3.359997e-02	k: 622	n:20000
KS ci ratio: 5.217660e-02	ci left: 2.143245e-01	ci right 2.258570e-01	k: 4401	n:20000
ANKRD13B   20000 perm   4 sec   (4959 perm/sec)   p_kst 2.200500e-01   p_cons 3.110000e-02   p_joint 1.359000e-01

Joint ci ratio: 3.594119e-02	ci left: 2.788023e-01	ci right 2.890396e-01	k: 8517	n:30000
Cons ci ratio: 1.268135e-01	ci left: 2.890608e-02	ci right 3.285213e-02	k: 925	n:30000
KS ci ratio: 4.258977e-02	ci left: 2.154884e-01	ci right 2.248991e-01	k: 6605	n:30000
ANKRD13B   30000 perm   6 sec   (4675 perm/sec)   p_kst 2.201667e-01   p_cons 3.083333e-02   p_joint 2.839000e-01

Joint ci ratio: 3.341122e-02	ci left: 2.517285e-01	ci right 2.603070e-01	k: 10240	n:40000
Cons ci ratio: 1.092623e-01	ci left: 2.946915e-02	ci right 3.289936e-02	k: 1246	n:40000
KS ci ratio: 3.688389e-02	ci left: 2.161222e-01	ci right 2.242684e-01	k: 8807	n:40000
ANKRD13B   40000 perm   9 sec   (4512 perm/sec)   p_kst 2.201750e-01   p_cons 3.115000e-02   p_joint 2.560000e-01

Joint ci ratio: 2.989845e-02	ci left: 2.519998e-01	ci right 2.596686e-01	k: 12791	n:50000
Cons ci ratio: 9.759018e-02	ci left: 2.973241e-02	ci right 3.280232e-02	k: 1562	n:50000
KS ci ratio: 3.302268e-02	ci left: 2.162163e-01	ci right 2.234962e-01	k: 10992	n:50000
ANKRD13B   50000 perm   11 sec   (4422 perm/sec)   p_kst 2.198400e-01   p_cons 3.124000e-02   p_joint 2.558200e-01

Outputting figure to mutsig2_images.part000000000008/ANKRD13B.3_1941_50000_0.21984_0.03124_0.25582.png
                gene_name: ANKRD13B
               theta_stop: 0.098 
                    nperm: 50000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.031 
      ci_cons_bounds_left: 0.030 
     ci_cons_bounds_right: 0.033 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 49 percent done.
ANKRD27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.437769e-02	ci left: 4.284445e-01	ci right 4.479915e-01	k: 4382	n:10000
Cons ci ratio: 2.104908e-02	ci left: 7.679013e-01	ci right 7.843376e-01	k: 7762	n:10000
KS ci ratio: 6.356810e-02	ci left: 2.666610e-01	ci right 2.842700e-01	k: 2754	n:10000
ANKRD27   10000 perm   2 sec   (5497 perm/sec)   p_kst 2.754000e-01   p_cons 7.762000e-01   p_joint 4.382000e-01

Outputting figure to mutsig2_images.part000000000008/ANKRD27.3_3265_10000_0.2754_0.7762_0.4382.png
                gene_name: ANKRD27
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 51 percent done.
ANKRD32
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.898176e-01	ci left: 3.700694e-02	ci right 4.486335e-02	k: 408	n:10000
Cons ci ratio: 4.249928e-02	ci left: 4.497952e-01	ci right 4.694284e-01	k: 4596	n:10000
KS ci ratio: 3.787022e-01	ci left: 8.595766e-03	ci right 1.269681e-02	k: 105	n:10000
ANKRD32   10000 perm   2 sec   (5021 perm/sec)   p_kst 1.050000e-02   p_cons 4.596000e-01   p_joint 4.080000e-02

Joint ci ratio: 1.329584e-01	ci left: 3.887454e-02	ci right 4.445971e-02	k: 832	n:20000
Cons ci ratio: 3.005705e-02	ci left: 4.526245e-01	ci right 4.664873e-01	k: 9191	n:20000
KS ci ratio: 2.553012e-01	ci left: 1.016235e-02	ci right 1.318213e-02	k: 232	n:20000
ANKRD32   20000 perm   4 sec   (4515 perm/sec)   p_kst 1.160000e-02   p_cons 4.595500e-01   p_joint 4.160000e-02

Joint ci ratio: 1.356026e-01	ci left: 2.525960e-02	ci right 2.896608e-02	k: 812	n:30000
Cons ci ratio: 2.456935e-02	ci left: 4.533487e-01	ci right 4.646593e-01	k: 13770	n:30000
KS ci ratio: 2.120119e-01	ci left: 1.007160e-02	ci right 1.249111e-02	k: 337	n:30000
ANKRD32   30000 perm   7 sec   (4306 perm/sec)   p_kst 1.123333e-02   p_cons 4.590000e-01   p_joint 2.706667e-02

Joint ci ratio: 1.168279e-01	ci left: 2.577352e-02	ci right 2.899558e-02	k: 1094	n:40000
Cons ci ratio: 2.100371e-02	ci left: 4.605520e-01	ci right 4.703531e-01	k: 18618	n:40000
KS ci ratio: 1.813164e-01	ci left: 1.050210e-02	ci right 1.261970e-02	k: 461	n:40000
ANKRD32   40000 perm   10 sec   (4170 perm/sec)   p_kst 1.152500e-02   p_cons 4.654500e-01   p_joint 2.735000e-02

Joint ci ratio: 9.531615e-02	ci left: 3.115828e-02	ci right 3.429628e-02	k: 1635	n:50000
Cons ci ratio: 1.935765e-02	ci left: 4.462118e-01	ci right 4.549539e-01	k: 22529	n:50000
KS ci ratio: 1.660733e-01	ci left: 1.010424e-02	ci right 1.195319e-02	k: 550	n:50000
ANKRD32   50000 perm   12 sec   (4056 perm/sec)   p_kst 1.100000e-02   p_cons 4.505800e-01   p_joint 3.270000e-02

Joint ci ratio: 8.465911e-02	ci left: 3.303754e-02	ci right 3.597438e-02	k: 2069	n:60000
Cons ci ratio: 1.766685e-02	ci left: 4.467129e-01	ci right 4.546919e-01	k: 27042	n:60000
KS ci ratio: 1.551046e-01	ci left: 9.715840e-03	ci right 1.136535e-02	k: 631	n:60000
ANKRD32   60000 perm   15 sec   (3965 perm/sec)   p_kst 1.051667e-02   p_cons 4.507000e-01   p_joint 3.448333e-02

Joint ci ratio: 8.211555e-02	ci left: 3.023240e-02	ci right 3.283520e-02	k: 2206	n:70000
Cons ci ratio: 1.634224e-02	ci left: 4.474373e-01	ci right 4.548239e-01	k: 31579	n:70000
KS ci ratio: 1.429474e-01	ci left: 9.868332e-03	ci right 1.140121e-02	k: 743	n:70000
ANKRD32   70000 perm   18 sec   (3891 perm/sec)   p_kst 1.061429e-02   p_cons 4.511286e-01   p_joint 3.151429e-02

Joint ci ratio: 7.548258e-02	ci left: 3.138013e-02	ci right 3.385392e-02	k: 2608	n:80000
Cons ci ratio: 1.531126e-02	ci left: 4.468855e-01	ci right 4.537931e-01	k: 36027	n:80000
KS ci ratio: 1.322519e-01	ci left: 1.014366e-02	ci right 1.159214e-02	k: 868	n:80000
ANKRD32   80000 perm   21 sec   (3807 perm/sec)   p_kst 1.085000e-02   p_cons 4.503375e-01   p_joint 3.260000e-02

Joint ci ratio: 6.262166e-02	ci left: 4.041417e-02	ci right 4.303769e-02	k: 3754	n:90000
Cons ci ratio: 1.397609e-02	ci left: 4.631363e-01	ci right 4.696658e-01	k: 41976	n:90000
KS ci ratio: 1.244072e-01	ci left: 1.023188e-02	ci right 1.159991e-02	k: 981	n:90000
ANKRD32   90000 perm   24 sec   (3723 perm/sec)   p_kst 1.090000e-02   p_cons 4.664000e-01   p_joint 4.171111e-02

Joint ci ratio: 5.593142e-02	ci left: 4.550896e-02	ci right 4.813741e-02	k: 4681	n:100000
Cons ci ratio: 1.327036e-02	ci left: 4.628742e-01	ci right 4.690677e-01	k: 46597	n:100000
KS ci ratio: 1.197614e-01	ci left: 9.964795e-03	ci right 1.124383e-02	k: 1059	n:100000
ANKRD32   100000 perm   27 sec   (3649 perm/sec)   p_kst 1.059000e-02   p_cons 4.659700e-01   p_joint 4.681000e-02

Joint ci ratio: 5.668502e-02	ci left: 4.048139e-02	ci right 4.285195e-02	k: 4582	n:110000
Cons ci ratio: 1.266801e-02	ci left: 4.624215e-01	ci right 4.683258e-01	k: 51191	n:110000
KS ci ratio: 1.141386e-01	ci left: 1.000320e-02	ci right 1.122281e-02	k: 1166	n:110000
ANKRD32   110000 perm   31 sec   (3583 perm/sec)   p_kst 1.060000e-02   p_cons 4.653727e-01   p_joint 4.165455e-02

Joint ci ratio: 5.786607e-02	ci left: 3.576647e-02	ci right 3.790599e-02	k: 4419	n:120000
Cons ci ratio: 1.213170e-02	ci left: 4.624246e-01	ci right 4.680771e-01	k: 55830	n:120000
KS ci ratio: 1.096321e-01	ci left: 9.963400e-03	ci right 1.112710e-02	k: 1264	n:120000
ANKRD32   120000 perm   34 sec   (3525 perm/sec)   p_kst 1.053333e-02   p_cons 4.652500e-01   p_joint 3.682500e-02

Joint ci ratio: 5.566437e-02	ci left: 3.572235e-02	ci right 3.777530e-02	k: 4776	n:130000
Cons ci ratio: 1.165226e-02	ci left: 4.626855e-01	ci right 4.681161e-01	k: 60502	n:130000
KS ci ratio: 1.057774e-01	ci left: 9.900568e-03	ci right 1.101374e-02	k: 1358	n:130000
ANKRD32   130000 perm   37 sec   (3470 perm/sec)   p_kst 1.044615e-02   p_cons 4.654000e-01   p_joint 3.673846e-02

Joint ci ratio: 5.138205e-02	ci left: 3.888777e-02	ci right 4.094562e-02	k: 5587	n:140000
Cons ci ratio: 1.120748e-02	ci left: 4.637126e-01	ci right 4.689460e-01	k: 65286	n:140000
KS ci ratio: 1.017380e-01	ci left: 9.958727e-03	ci right 1.103312e-02	k: 1468	n:140000
ANKRD32   140000 perm   41 sec   (3416 perm/sec)   p_kst 1.048571e-02   p_cons 4.663286e-01   p_joint 3.990714e-02

Joint ci ratio: 5.221500e-02	ci left: 3.526697e-02	ci right 3.716435e-02	k: 5431	n:150000
Cons ci ratio: 1.082417e-02	ci left: 4.639527e-01	ci right 4.690086e-01	k: 69972	n:150000
KS ci ratio: 9.809722e-02	ci left: 1.001634e-02	ci right 1.105605e-02	k: 1579	n:150000
ANKRD32   150000 perm   45 sec   (3359 perm/sec)   p_kst 1.052667e-02   p_cons 4.664800e-01   p_joint 3.620667e-02

Outputting figure to mutsig2_images.part000000000008/ANKRD32.3_3257_150000_0.010527_0.46648_0.036207.png
                gene_name: ANKRD32
               theta_stop: 0.098 
                    nperm: 150000 
                     p_ks: 0.011 
        ci_ks_bounds_left: 0.010 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.036 
     ci_joint_bounds_left: 0.035 
    ci_joint_bounds_right: 0.037 

Current progress: 53 percent done.
ANKRD46
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.308208e-02	ci left: 3.434285e-01	ci right 3.622573e-01	k: 3528	n:10000
KS ci ratio: 2.115807e-02	ci left: 7.660785e-01	ci right 7.825614e-01	k: 7744	n:10000
ANKRD46   10000 perm   2 sec   (6448 perm/sec)   p_kst 7.744000e-01   p_cons 3.528000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000008/ANKRD46.3_699_10000_0.7744_0.3528_1.png
                gene_name: ANKRD46
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 55 percent done.
ANKRD52
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.399846e-03	ci left: 9.410771e-01	ci right 9.500611e-01	k: 9457	n:10000
KS ci ratio: 1.497436e-02	ci left: 8.660086e-01	ci right 8.791735e-01	k: 8727	n:10000
ANKRD52   10000 perm   2 sec   (5180 perm/sec)   p_kst 8.727000e-01   p_cons 9.457000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000008/ANKRD52.3_3343_10000_0.8727_0.9457_1.png
                gene_name: ANKRD52
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 57 percent done.
ANKRD56
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.598823e-01	ci left: 5.215064e-02	ci right 6.130972e-02	k: 566	n:10000
Cons ci ratio: 1.920312e-01	ci left: 3.614841e-02	ci right 4.392246e-02	k: 399	n:10000
KS ci ratio: 1.816359e-01	ci left: 4.044604e-02	ci right 4.862195e-02	k: 444	n:10000
ANKRD56   10000 perm   2 sec   (6065 perm/sec)   p_kst 4.440000e-02   p_cons 3.990000e-02   p_joint 5.660000e-02

Joint ci ratio: 1.780934e-01	ci left: 2.154068e-02	ci right 2.579935e-02	k: 472	n:20000
Cons ci ratio: 1.267345e-01	ci left: 4.275002e-02	ci right 4.858299e-02	k: 912	n:20000
KS ci ratio: 1.293542e-01	ci left: 4.105370e-02	ci right 4.677985e-02	k: 877	n:20000
ANKRD56   20000 perm   4 sec   (5136 perm/sec)   p_kst 4.385000e-02   p_cons 4.560000e-02   p_joint 2.360000e-02

Joint ci ratio: 1.885683e-01	ci left: 1.285992e-02	ci right 1.556869e-02	k: 425	n:30000
Cons ci ratio: 1.040978e-01	ci left: 4.277918e-02	ci right 4.750942e-02	k: 1353	n:30000
KS ci ratio: 1.060823e-01	ci left: 4.121943e-02	ci right 4.586949e-02	k: 1305	n:30000
ANKRD56   30000 perm   6 sec   (4915 perm/sec)   p_kst 4.350000e-02   p_cons 4.510000e-02   p_joint 1.416667e-02

Joint ci ratio: 1.776565e-01	ci left: 1.095598e-02	ci right 1.311572e-02	k: 480	n:40000
Cons ci ratio: 9.068782e-02	ci left: 4.259770e-02	ci right 4.666873e-02	k: 1784	n:40000
KS ci ratio: 9.187949e-02	ci left: 4.152174e-02	ci right 4.554487e-02	k: 1740	n:40000
ANKRD56   40000 perm   8 sec   (4765 perm/sec)   p_kst 4.350000e-02   p_cons 4.460000e-02   p_joint 1.200000e-02

Joint ci ratio: 1.286856e-01	ci left: 1.704635e-02	ci right 1.941006e-02	k: 910	n:50000
Cons ci ratio: 8.064677e-02	ci left: 4.329746e-02	ci right 4.695558e-02	k: 2255	n:50000
KS ci ratio: 8.302588e-02	ci left: 4.090524e-02	ci right 4.446810e-02	k: 2133	n:50000
ANKRD56   50000 perm   11 sec   (4653 perm/sec)   p_kst 4.266000e-02   p_cons 4.510000e-02   p_joint 1.820000e-02

Joint ci ratio: 1.333390e-01	ci left: 1.325240e-02	ci right 1.516168e-02	k: 851	n:60000
Cons ci ratio: 7.363730e-02	ci left: 4.343683e-02	ci right 4.677402e-02	k: 2705	n:60000
KS ci ratio: 7.502708e-02	ci left: 4.188163e-02	ci right 4.516271e-02	k: 2610	n:60000
ANKRD56   60000 perm   13 sec   (4547 perm/sec)   p_kst 4.350000e-02   p_cons 4.508333e-02   p_joint 1.418333e-02

Joint ci ratio: 1.490398e-01	ci left: 9.055967e-03	ci right 1.052795e-02	k: 684	n:70000
Cons ci ratio: 6.796107e-02	ci left: 4.382738e-02	ci right 4.692474e-02	k: 3175	n:70000
KS ci ratio: 6.961911e-02	ci left: 4.181811e-02	ci right 4.484847e-02	k: 3032	n:70000
ANKRD56   70000 perm   16 sec   (4432 perm/sec)   p_kst 4.331429e-02   p_cons 4.535714e-02   p_joint 9.771429e-03

Joint ci ratio: 1.437275e-01	ci left: 8.550004e-03	ci right 9.885951e-03	k: 736	n:80000
Cons ci ratio: 6.370720e-02	ci left: 4.374609e-02	ci right 4.663701e-02	k: 3614	n:80000
KS ci ratio: 6.545194e-02	ci left: 4.150621e-02	ci right 4.432706e-02	k: 3432	n:80000
ANKRD56   80000 perm   18 sec   (4342 perm/sec)   p_kst 4.290000e-02   p_cons 4.517500e-02   p_joint 9.200000e-03

Joint ci ratio: 1.167707e-01	ci left: 1.164405e-02	ci right 1.309875e-02	k: 1112	n:90000
Cons ci ratio: 6.005506e-02	ci left: 4.384094e-02	ci right 4.656625e-02	k: 4067	n:90000
KS ci ratio: 6.193632e-02	ci left: 4.128980e-02	ci right 4.393978e-02	k: 3834	n:90000
ANKRD56   90000 perm   21 sec   (4259 perm/sec)   p_kst 4.260000e-02   p_cons 4.518889e-02   p_joint 1.235556e-02

Joint ci ratio: 1.206854e-01	ci left: 9.809560e-03	ci right 1.107908e-02	k: 1043	n:100000
Cons ci ratio: 5.707915e-02	ci left: 4.375294e-02	ci right 4.633353e-02	k: 4503	n:100000
KS ci ratio: 5.884538e-02	ci left: 4.123827e-02	ci right 4.374835e-02	k: 4248	n:100000
ANKRD56   100000 perm   24 sec   (4174 perm/sec)   p_kst 4.248000e-02   p_cons 4.503000e-02   p_joint 1.043000e-02

Joint ci ratio: 1.056757e-01	ci left: 1.170125e-02	ci right 1.301556e-02	k: 1358	n:110000
Cons ci ratio: 5.446546e-02	ci left: 4.374651e-02	ci right 4.620483e-02	k: 4946	n:110000
KS ci ratio: 5.626360e-02	ci left: 4.107327e-02	ci right 4.346003e-02	k: 4648	n:110000
ANKRD56   110000 perm   27 sec   (4102 perm/sec)   p_kst 4.225455e-02   p_cons 4.496364e-02   p_joint 1.234545e-02

Joint ci ratio: 1.026790e-01	ci left: 1.138346e-02	ci right 1.262362e-02	k: 1439	n:120000
Cons ci ratio: 5.219600e-02	ci left: 4.371871e-02	ci right 4.607001e-02	k: 5386	n:120000
KS ci ratio: 5.384413e-02	ci left: 4.115989e-02	ci right 4.344563e-02	k: 5075	n:120000
ANKRD56   120000 perm   30 sec   (4033 perm/sec)   p_kst 4.229167e-02   p_cons 4.488333e-02   p_joint 1.199167e-02

Joint ci ratio: 1.013828e-01	ci left: 1.079249e-02	ci right 1.195254e-02	k: 1477	n:130000
Cons ci ratio: 5.012097e-02	ci left: 4.381101e-02	ci right 4.607088e-02	k: 5841	n:130000
KS ci ratio: 5.170724e-02	ci left: 4.124265e-02	ci right 4.343936e-02	k: 5503	n:130000
ANKRD56   130000 perm   33 sec   (3966 perm/sec)   p_kst 4.233077e-02   p_cons 4.493077e-02   p_joint 1.136154e-02

Joint ci ratio: 1.068543e-01	ci left: 9.012387e-03	ci right 1.003665e-02	k: 1332	n:140000
Cons ci ratio: 4.831944e-02	ci left: 4.381405e-02	ci right 4.599057e-02	k: 6285	n:140000
KS ci ratio: 4.987199e-02	ci left: 4.120926e-02	ci right 4.332404e-02	k: 5916	n:140000
ANKRD56   140000 perm   36 sec   (3897 perm/sec)   p_kst 4.225714e-02   p_cons 4.489286e-02   p_joint 9.514286e-03

Joint ci ratio: 1.096615e-01	ci left: 7.983239e-03	ci right 8.915911e-03	k: 1266	n:150000
Cons ci ratio: 4.658334e-02	ci left: 4.402890e-02	ci right 4.613539e-02	k: 6761	n:150000
KS ci ratio: 4.811616e-02	ci left: 4.135286e-02	ci right 4.339821e-02	k: 6355	n:150000
ANKRD56   150000 perm   39 sec   (3833 perm/sec)   p_kst 4.236667e-02   p_cons 4.507333e-02   p_joint 8.440000e-03

Joint ci ratio: 1.078194e-01	ci left: 7.751756e-03	ci right 8.641203e-03	k: 1310	n:160000
Cons ci ratio: 4.516581e-02	ci left: 4.394608e-02	ci right 4.598295e-02	k: 7193	n:160000
KS ci ratio: 4.663043e-02	ci left: 4.131278e-02	ci right 4.329135e-02	k: 6767	n:160000
ANKRD56   160000 perm   42 sec   (3769 perm/sec)   p_kst 4.229375e-02   p_cons 4.495625e-02   p_joint 8.187500e-03

Joint ci ratio: 1.048638e-01	ci left: 7.725207e-03	ci right 8.585810e-03	k: 1385	n:170000
Cons ci ratio: 4.392457e-02	ci left: 4.376909e-02	ci right 4.574059e-02	k: 7607	n:170000
KS ci ratio: 4.529740e-02	ci left: 4.123755e-02	ci right 4.315458e-02	k: 7172	n:170000
ANKRD56   170000 perm   46 sec   (3708 perm/sec)   p_kst 4.218824e-02   p_cons 4.474706e-02   p_joint 8.147059e-03

Joint ci ratio: 1.023153e-01	ci left: 7.674832e-03	ci right 8.507794e-03	k: 1455	n:180000
Cons ci ratio: 4.265523e-02	ci left: 4.385991e-02	ci right 4.577701e-02	k: 8066	n:180000
KS ci ratio: 4.405734e-02	ci left: 4.119888e-02	ci right 4.306035e-02	k: 7582	n:180000
ANKRD56   180000 perm   49 sec   (3653 perm/sec)   p_kst 4.212222e-02   p_cons 4.481111e-02   p_joint 8.083333e-03

Joint ci ratio: 1.000763e-01	ci left: 7.609457e-03	ci right 8.416188e-03	k: 1521	n:190000
Cons ci ratio: 4.146448e-02	ci left: 4.399401e-02	ci right 4.586201e-02	k: 8535	n:190000
KS ci ratio: 4.287466e-02	ci left: 4.123786e-02	ci right 4.304983e-02	k: 8006	n:190000
ANKRD56   190000 perm   53 sec   (3597 perm/sec)   p_kst 4.213684e-02   p_cons 4.492105e-02   p_joint 8.005263e-03

Joint ci ratio: 8.682050e-02	ci left: 9.651717e-03	ci right 1.053257e-02	k: 2017	n:200000
Cons ci ratio: 4.031664e-02	ci left: 4.422431e-02	ci right 4.604890e-02	k: 9026	n:200000
KS ci ratio: 4.248698e-02	ci left: 3.995696e-02	ci right 4.169638e-02	k: 8164	n:200000
ANKRD56   200000 perm   56 sec   (3542 perm/sec)   p_kst 4.082000e-02   p_cons 4.513000e-02   p_joint 1.008500e-02

Outputting figure to mutsig2_images.part000000000008/ANKRD56.3_2386_200000_0.04082_0.04513_0.010085.png
                gene_name: ANKRD56
               theta_stop: 0.087 
                    nperm: 200000 
                     p_ks: 0.041 
        ci_ks_bounds_left: 0.040 
       ci_ks_bounds_right: 0.042 
                   p_cons: 0.045 
      ci_cons_bounds_left: 0.044 
     ci_cons_bounds_right: 0.046 
                  p_joint: 0.010 
     ci_joint_bounds_left: 0.0097 
    ci_joint_bounds_right: 0.011 

Current progress: 59 percent done.
ANKS6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.402065e-02	ci left: 7.181531e-01	ci right 7.357145e-01	k: 7270	n:10000
Cons ci ratio: 4.424278e-02	ci left: 4.299405e-01	ci right 4.494947e-01	k: 4397	n:10000
KS ci ratio: 2.891436e-02	ci left: 6.381450e-01	ci right 6.569690e-01	k: 6476	n:10000
ANKS6   10000 perm   2 sec   (5333 perm/sec)   p_kst 6.476000e-01   p_cons 4.397000e-01   p_joint 7.270000e-01

Outputting figure to mutsig2_images.part000000000008/ANKS6.3_2676_10000_0.6476_0.4397_0.727.png
                gene_name: ANKS6
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 61 percent done.
ANLN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.911566e-02	ci left: 1.892437e-01	ci right 2.049332e-01	k: 1970	n:10000
Cons ci ratio: 2.227578e-02	ci left: 7.473571e-01	ci right 7.642936e-01	k: 7559	n:10000
KS ci ratio: 1.417902e-01	ci left: 6.594512e-02	ci right 7.610649e-02	k: 709	n:10000
ANLN   10000 perm   2 sec   (5187 perm/sec)   p_kst 7.090000e-02   p_cons 7.559000e-01   p_joint 1.970000e-01

Joint ci ratio: 6.060305e-02	ci left: 1.677313e-01	ci right 1.782640e-01	k: 3459	n:20000
Cons ci ratio: 1.577918e-02	ci left: 7.492296e-01	ci right 7.611961e-01	k: 15105	n:20000
KS ci ratio: 1.010697e-01	ci left: 6.640396e-02	ci right 7.352168e-02	k: 1398	n:20000
ANLN   20000 perm   4 sec   (4594 perm/sec)   p_kst 6.990000e-02   p_cons 7.552500e-01   p_joint 1.729500e-01

Joint ci ratio: 5.385355e-02	ci left: 1.460427e-01	ci right 1.541585e-01	k: 4502	n:30000
Cons ci ratio: 1.287264e-02	ci left: 7.506624e-01	ci right 7.604214e-01	k: 22667	n:30000
KS ci ratio: 8.416313e-02	ci left: 6.458829e-02	ci right 7.029583e-02	k: 2022	n:30000
ANLN   30000 perm   7 sec   (4374 perm/sec)   p_kst 6.740000e-02   p_cons 7.555667e-01   p_joint 1.500667e-01

Outputting figure to mutsig2_images.part000000000008/ANLN.3_3471_30000_0.0674_0.75557_0.15007.png
                gene_name: ANLN
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.067 
        ci_ks_bounds_left: 0.065 
       ci_ks_bounds_right: 0.070 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.15 

Current progress: 63 percent done.
ANTXR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.535527e-02	ci left: 4.177760e-01	ci right 4.372662e-01	k: 4275	n:10000
Cons ci ratio: 1.209850e-01	ci left: 8.922438e-02	ci right 1.008128e-01	k: 949	n:10000
KS ci ratio: 2.549010e-02	ci left: 6.937343e-01	ci right 7.117474e-01	k: 7028	n:10000
ANTXR1   10000 perm   2 sec   (6039 perm/sec)   p_kst 7.028000e-01   p_cons 9.490000e-02   p_joint 4.275000e-01

Joint ci ratio: 3.169031e-02	ci left: 4.265173e-01	ci right 4.403020e-01	k: 8668	n:20000
Cons ci ratio: 8.525382e-02	ci left: 9.150982e-02	ci right 9.970819e-02	k: 1911	n:20000
KS ci ratio: 1.806354e-02	ci left: 6.955065e-01	ci right 7.082347e-01	k: 14038	n:20000
ANTXR1   20000 perm   4 sec   (5307 perm/sec)   p_kst 7.019000e-01   p_cons 9.555000e-02   p_joint 4.334000e-01

Outputting figure to mutsig2_images.part000000000008/ANTXR1.3_1844_20000_0.7019_0.09555_0.4334.png
                gene_name: ANTXR1
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.096 
      ci_cons_bounds_left: 0.092 
     ci_cons_bounds_right: 0.100 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.44 

Current progress: 65 percent done.
ANUBL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.644396e-01	ci left: 1.865372e-02	ci right 2.442970e-02	k: 214	n:10000
Cons ci ratio: 3.556745e-01	ci left: 9.867770e-03	ci right 1.422343e-02	k: 119	n:10000
KS ci ratio: 4.933629e-02	ci left: 3.773383e-01	ci right 3.965276e-01	k: 3869	n:10000
ANUBL1   10000 perm   2 sec   (5795 perm/sec)   p_kst 3.869000e-01   p_cons 1.190000e-02   p_joint 2.140000e-02

Joint ci ratio: 1.786746e-01	ci left: 2.139724e-02	ci right 2.564284e-02	k: 469	n:20000
Cons ci ratio: 2.658944e-01	ci left: 9.320579e-03	ci right 1.222429e-02	k: 214	n:20000
KS ci ratio: 3.475748e-02	ci left: 3.819359e-01	ci right 3.954964e-01	k: 7774	n:20000
ANUBL1   20000 perm   4 sec   (5115 perm/sec)   p_kst 3.887000e-01   p_cons 1.070000e-02   p_joint 2.345000e-02

Joint ci ratio: 9.598481e-02	ci left: 5.013325e-02	ci right 5.522049e-02	k: 1579	n:30000
Cons ci ratio: 2.179593e-01	ci left: 9.503598e-03	ci right 1.185927e-02	k: 319	n:30000
KS ci ratio: 2.841416e-02	ci left: 3.826132e-01	ci right 3.936751e-01	k: 11644	n:30000
ANUBL1   30000 perm   6 sec   (4844 perm/sec)   p_kst 3.881333e-01   p_cons 1.063333e-02   p_joint 5.263333e-02

Joint ci ratio: 9.655446e-02	ci left: 3.766101e-02	ci right 4.150620e-02	k: 1582	n:40000
Cons ci ratio: 1.902672e-01	ci left: 9.500442e-03	ci right 1.152157e-02	k: 419	n:40000
KS ci ratio: 2.464452e-02	ci left: 3.826467e-01	ci right 3.922196e-01	k: 15497	n:40000
ANUBL1   40000 perm   9 sec   (4679 perm/sec)   p_kst 3.874250e-01   p_cons 1.047500e-02   p_joint 3.955000e-02

Joint ci ratio: 9.632510e-02	ci left: 3.051360e-02	ci right 3.362103e-02	k: 1602	n:50000
Cons ci ratio: 1.677749e-01	ci left: 9.893343e-03	ci right 1.172412e-02	k: 539	n:50000
KS ci ratio: 2.205712e-02	ci left: 3.828472e-01	ci right 3.914059e-01	k: 19356	n:50000
ANUBL1   50000 perm   11 sec   (4553 perm/sec)   p_kst 3.871200e-01   p_cons 1.078000e-02   p_joint 3.204000e-02

Joint ci ratio: 6.845712e-02	ci left: 5.004006e-02	ci right 5.360345e-02	k: 3108	n:60000
Cons ci ratio: 1.556030e-01	ci left: 9.651741e-03	ci right 1.129613e-02	k: 627	n:60000
KS ci ratio: 2.013134e-02	ci left: 3.833162e-01	ci right 3.911280e-01	k: 23233	n:60000
ANUBL1   60000 perm   14 sec   (4436 perm/sec)   p_kst 3.872167e-01   p_cons 1.045000e-02   p_joint 5.180000e-02

Joint ci ratio: 6.525193e-02	ci left: 4.742650e-02	ci right 5.063959e-02	k: 3431	n:70000
Cons ci ratio: 1.431420e-01	ci left: 9.840773e-03	ci right 1.137163e-02	k: 741	n:70000
KS ci ratio: 1.868145e-02	ci left: 3.825053e-01	ci right 3.897327e-01	k: 27028	n:70000
ANUBL1   70000 perm   16 sec   (4337 perm/sec)   p_kst 3.861143e-01   p_cons 1.058571e-02   p_joint 4.901429e-02

Joint ci ratio: 7.346885e-02	ci left: 3.309861e-02	ci right 3.563530e-02	k: 2748	n:80000
Cons ci ratio: 1.337379e-01	ci left: 9.913980e-03	ci right 1.134684e-02	k: 849	n:80000
KS ci ratio: 1.752489e-02	ci left: 3.813890e-01	ci right 3.881444e-01	k: 30781	n:80000
ANUBL1   80000 perm   19 sec   (4233 perm/sec)   p_kst 3.847625e-01   p_cons 1.061250e-02   p_joint 3.435000e-02

Joint ci ratio: 6.770281e-02	ci left: 3.469398e-02	ci right 3.713605e-02	k: 3231	n:90000
Cons ci ratio: 1.253790e-01	ci left: 1.007037e-02	ci right 1.142811e-02	k: 966	n:90000
KS ci ratio: 1.650122e-02	ci left: 3.821963e-01	ci right 3.885666e-01	k: 34684	n:90000
ANUBL1   90000 perm   22 sec   (4134 perm/sec)   p_kst 3.853778e-01   p_cons 1.073333e-02   p_joint 3.590000e-02

Joint ci ratio: 7.023402e-02	ci left: 2.914794e-02	ci right 3.127942e-02	k: 3020	n:100000
Cons ci ratio: 1.184139e-01	ci left: 1.019772e-02	ci right 1.149089e-02	k: 1083	n:100000
KS ci ratio: 1.564019e-02	ci left: 3.827913e-01	ci right 3.888354e-01	k: 38581	n:100000
ANUBL1   100000 perm   25 sec   (4049 perm/sec)   p_kst 3.858100e-01   p_cons 1.083000e-02   p_joint 3.020000e-02

Joint ci ratio: 6.100942e-02	ci left: 3.506804e-02	ci right 3.728377e-02	k: 3978	n:110000
Cons ci ratio: 1.128267e-01	ci left: 1.024175e-02	ci right 1.147515e-02	k: 1193	n:110000
KS ci ratio: 1.490725e-02	ci left: 3.830943e-01	ci right 3.888571e-01	k: 42457	n:110000
ANUBL1   110000 perm   28 sec   (3969 perm/sec)   p_kst 3.859727e-01   p_cons 1.084545e-02   p_joint 3.616364e-02

Joint ci ratio: 4.956938e-02	ci left: 4.830418e-02	ci right 5.076765e-02	k: 5943	n:120000
Cons ci ratio: 9.508086e-02	ci left: 1.330216e-02	ci right 1.463815e-02	k: 1675	n:120000
KS ci ratio: 1.424499e-02	ci left: 3.841346e-01	ci right 3.896542e-01	k: 46427	n:120000
ANUBL1   120000 perm   31 sec   (3898 perm/sec)   p_kst 3.868917e-01   p_cons 1.395833e-02   p_joint 4.952500e-02

Outputting figure to mutsig2_images.part000000000008/ANUBL1.3_2220_120000_0.38689_0.013958_0.049525.png
                gene_name: ANUBL1
               theta_stop: 0.095 
                    nperm: 120000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.014 
      ci_cons_bounds_left: 0.013 
     ci_cons_bounds_right: 0.015 
                  p_joint: 0.050 
     ci_joint_bounds_left: 0.048 
    ci_joint_bounds_right: 0.051 

Current progress: 67 percent done.
ANXA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.621287e-02	ci left: 2.011651e-01	ci right 2.172047e-01	k: 2091	n:10000
Cons ci ratio: 6.929979e-02	ci left: 2.339280e-01	ci right 2.508223e-01	k: 2423	n:10000
KS ci ratio: 1.121871e-01	ci left: 1.026640e-01	ci right 1.149650e-01	k: 1087	n:10000
ANXA5   10000 perm   2 sec   (6213 perm/sec)   p_kst 1.087000e-01   p_cons 2.423000e-01   p_joint 2.091000e-01

Joint ci ratio: 6.486688e-02	ci left: 1.493685e-01	ci right 1.594322e-01	k: 3087	n:20000
Cons ci ratio: 4.919030e-02	ci left: 2.350360e-01	ci right 2.469394e-01	k: 4819	n:20000
KS ci ratio: 7.990779e-02	ci left: 1.030921e-01	ci right 1.117224e-01	k: 2147	n:20000
ANXA5   20000 perm   4 sec   (5395 perm/sec)   p_kst 1.073500e-01   p_cons 2.409500e-01   p_joint 1.543500e-01

Outputting figure to mutsig2_images.part000000000008/ANXA5.3_1011_20000_0.10735_0.24095_0.15435.png
                gene_name: ANXA5
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 69 percent done.
AOC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.536657e-02	ci left: 3.245569e-01	ci right 3.431400e-01	k: 3338	n:10000
Cons ci ratio: 4.918069e-02	ci left: 3.788311e-01	ci right 3.980340e-01	k: 3884	n:10000
KS ci ratio: 1.520741e-01	ci left: 5.754436e-02	ci right 6.711256e-02	k: 622	n:10000
AOC3   10000 perm   2 sec   (5750 perm/sec)   p_kst 6.220000e-02   p_cons 3.884000e-01   p_joint 3.338000e-01

Joint ci ratio: 6.300704e-02	ci left: 1.570167e-01	ci right 1.672817e-01	k: 3242	n:20000
Cons ci ratio: 3.409745e-02	ci left: 3.910569e-01	ci right 4.046728e-01	k: 7957	n:20000
KS ci ratio: 1.083252e-01	ci left: 5.811191e-02	ci right 6.481629e-02	k: 1228	n:20000
AOC3   20000 perm   4 sec   (4993 perm/sec)   p_kst 6.140000e-02   p_cons 3.978500e-01   p_joint 1.621000e-01

Joint ci ratio: 5.424388e-02	ci left: 1.442300e-01	ci right 1.523049e-01	k: 4447	n:30000
Cons ci ratio: 2.875001e-02	ci left: 3.770619e-01	ci right 3.880942e-01	k: 11477	n:30000
KS ci ratio: 8.843500e-02	ci left: 5.874203e-02	ci right 6.420994e-02	k: 1843	n:30000
AOC3   30000 perm   6 sec   (4753 perm/sec)   p_kst 6.143333e-02   p_cons 3.825667e-01   p_joint 1.482333e-01

Outputting figure to mutsig2_images.part000000000008/AOC3.3_2308_30000_0.061433_0.38257_0.14823.png
                gene_name: AOC3
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.061 
        ci_ks_bounds_left: 0.059 
       ci_ks_bounds_right: 0.064 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 71 percent done.
ANKRD13C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.022202e-02	ci left: 9.314385e-01	ci right 9.411054e-01	k: 9364	n:10000
KS ci ratio: 5.531683e-02	ci left: 3.249540e-01	ci right 3.435426e-01	k: 3342	n:10000
ANKRD13C   10000 perm   2 sec   (6576 perm/sec)   p_kst 3.342000e-01   p_cons 9.364000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000008/ANKRD13C.2_1678_10000_0.3342_0.9364_1.png
                gene_name: ANKRD13C
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
ANKRD24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.923248e-02	ci left: 3.783335e-01	ci right 3.975319e-01	k: 3879	n:10000
Cons ci ratio: 3.916278e-02	ci left: 4.905513e-01	ci right 5.102485e-01	k: 5004	n:10000
KS ci ratio: 1.728722e-01	ci left: 4.465920e-02	ci right 5.320602e-02	k: 488	n:10000
ANKRD24   10000 perm   2 sec   (5179 perm/sec)   p_kst 4.880000e-02   p_cons 5.004000e-01   p_joint 3.879000e-01

Joint ci ratio: 4.385511e-02	ci left: 2.791477e-01	ci right 2.917147e-01	k: 5708	n:20000
Cons ci ratio: 2.919126e-02	ci left: 4.671590e-01	ci right 4.810486e-01	k: 9482	n:20000
KS ci ratio: 1.190142e-01	ci left: 4.838015e-02	ci right 5.455108e-02	k: 1028	n:20000
ANKRD24   20000 perm   4 sec   (4522 perm/sec)   p_kst 5.140000e-02   p_cons 4.741000e-01   p_joint 2.854000e-01

Joint ci ratio: 2.517831e-02	ci left: 4.412295e-01	ci right 4.525141e-01	k: 13406	n:30000
Cons ci ratio: 2.268084e-02	ci left: 4.932258e-01	ci right 5.045745e-01	k: 14967	n:30000
KS ci ratio: 9.786246e-02	ci left: 4.827697e-02	ci right 5.327714e-02	k: 1522	n:30000
ANKRD24   30000 perm   7 sec   (4308 perm/sec)   p_kst 5.073333e-02   p_cons 4.989000e-01   p_joint 4.468667e-01

Outputting figure to mutsig2_images.part000000000008/ANKRD24.2_3525_30000_0.050733_0.4989_0.44687.png
                gene_name: ANKRD24
               theta_stop: 0.098 
                    nperm: 30000 
                     p_ks: 0.051 
        ci_ks_bounds_left: 0.048 
       ci_ks_bounds_right: 0.053 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.45 

Current progress: 76 percent done.
ANKRD36B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.785097e-01	ci left: 4.188120e-02	ci right 5.018585e-02	k: 459	n:10000
Cons ci ratio: 5.946770e-02	ci left: 2.938030e-01	ci right 3.119119e-01	k: 3028	n:10000
KS ci ratio: 3.920006e-01	ci left: 7.963073e-03	ci right 1.193024e-02	k: 98	n:10000
ANKRD36B   10000 perm   2 sec   (4730 perm/sec)   p_kst 9.800000e-03   p_cons 3.028000e-01   p_joint 4.590000e-02

Joint ci ratio: 9.460828e-02	ci left: 7.529807e-02	ci right 8.282484e-02	k: 1580	n:20000
Cons ci ratio: 4.185679e-02	ci left: 2.984241e-01	ci right 3.112327e-01	k: 6096	n:20000
KS ci ratio: 2.730449e-01	ci left: 8.807415e-03	ci right 1.163770e-02	k: 203	n:20000
ANKRD36B   20000 perm   5 sec   (4283 perm/sec)   p_kst 1.015000e-02   p_cons 3.048000e-01   p_joint 7.900000e-02

Joint ci ratio: 6.062895e-02	ci left: 1.185797e-01	ci right 1.260269e-01	k: 3668	n:30000
Cons ci ratio: 3.406741e-02	ci left: 3.009535e-01	ci right 3.114174e-01	k: 9185	n:30000
KS ci ratio: 2.162579e-01	ci left: 9.661284e-03	ci right 1.203487e-02	k: 324	n:30000
ANKRD36B   30000 perm   7 sec   (4098 perm/sec)   p_kst 1.080000e-02   p_cons 3.061667e-01   p_joint 1.222667e-01

Joint ci ratio: 4.441825e-02	ci left: 1.593428e-01	ci right 1.666062e-01	k: 6518	n:40000
Cons ci ratio: 2.959377e-02	ci left: 3.003654e-01	ci right 3.094129e-01	k: 12195	n:40000
KS ci ratio: 1.889083e-01	ci left: 9.643388e-03	ci right 1.167859e-02	k: 425	n:40000
ANKRD36B   40000 perm   10 sec   (3968 perm/sec)   p_kst 1.062500e-02   p_cons 3.048750e-01   p_joint 1.629500e-01

Joint ci ratio: 3.592809e-02	ci left: 1.888336e-01	ci right 1.957621e-01	k: 9614	n:50000
Cons ci ratio: 2.642957e-02	ci left: 3.014839e-01	ci right 3.095787e-01	k: 15276	n:50000
KS ci ratio: 1.663789e-01	ci left: 1.006589e-02	ci right 1.191154e-02	k: 548	n:50000
ANKRD36B   50000 perm   13 sec   (3882 perm/sec)   p_kst 1.096000e-02   p_cons 3.055200e-01   p_joint 1.922800e-01

Joint ci ratio: 3.335542e-02	ci left: 1.839863e-01	ci right 1.902440e-01	k: 11226	n:60000
Cons ci ratio: 2.411297e-02	ci left: 3.020812e-01	ci right 3.094709e-01	k: 18346	n:60000
KS ci ratio: 1.540002e-01	ci left: 9.860094e-03	ci right 1.152108e-02	k: 640	n:60000
ANKRD36B   60000 perm   16 sec   (3802 perm/sec)   p_kst 1.066667e-02   p_cons 3.057667e-01   p_joint 1.871000e-01

Joint ci ratio: 3.409858e-02	ci left: 1.560995e-01	ci right 1.615288e-01	k: 11116	n:70000
Cons ci ratio: 2.231514e-02	ci left: 3.025302e-01	ci right 3.093716e-01	k: 21416	n:70000
KS ci ratio: 1.432396e-01	ci left: 9.826995e-03	ci right 1.135684e-02	k: 740	n:70000
ANKRD36B   70000 perm   19 sec   (3716 perm/sec)   p_kst 1.057143e-02   p_cons 3.059429e-01   p_joint 1.588000e-01

Joint ci ratio: 3.206622e-02	ci left: 1.548702e-01	ci right 1.599297e-01	k: 12591	n:80000
Cons ci ratio: 2.087794e-02	ci left: 3.026704e-01	ci right 3.090687e-01	k: 24469	n:80000
KS ci ratio: 1.338175e-01	ci left: 9.901895e-03	ci right 1.133393e-02	k: 848	n:80000
ANKRD36B   80000 perm   22 sec   (3652 perm/sec)   p_kst 1.060000e-02   p_cons 3.058625e-01   p_joint 1.573875e-01

Joint ci ratio: 3.161758e-02	ci left: 1.435665e-01	ci right 1.481897e-01	k: 13128	n:90000
Cons ci ratio: 1.970750e-02	ci left: 3.023474e-01	ci right 3.083763e-01	k: 27482	n:90000
KS ci ratio: 1.257740e-01	ci left: 1.000578e-02	ci right 1.135937e-02	k: 960	n:90000
ANKRD36B   90000 perm   25 sec   (3596 perm/sec)   p_kst 1.066667e-02   p_cons 3.053556e-01   p_joint 1.458667e-01

Joint ci ratio: 3.145349e-02	ci left: 1.323214e-01	ci right 1.365598e-01	k: 13443	n:100000
Cons ci ratio: 1.870485e-02	ci left: 3.023067e-01	ci right 3.080246e-01	k: 30516	n:100000
KS ci ratio: 1.190259e-01	ci left: 1.009095e-02	ci right 1.137766e-02	k: 1072	n:100000
ANKRD36B   100000 perm   28 sec   (3533 perm/sec)   p_kst 1.072000e-02   p_cons 3.051600e-01   p_joint 1.344300e-01

Joint ci ratio: 3.137246e-02	ci left: 1.223376e-01	ci right 1.262458e-01	k: 13671	n:110000
Cons ci ratio: 1.780220e-02	ci left: 3.032048e-01	ci right 3.086600e-01	k: 33652	n:110000
KS ci ratio: 1.140892e-01	ci left: 1.001203e-02	ci right 1.123216e-02	k: 1167	n:110000
ANKRD36B   110000 perm   32 sec   (3471 perm/sec)   p_kst 1.060909e-02   p_cons 3.059273e-01   p_joint 1.242818e-01

Joint ci ratio: 2.866969e-02	ci left: 1.328559e-01	ci right 1.367285e-01	k: 16174	n:120000
Cons ci ratio: 1.700304e-02	ci left: 3.043492e-01	ci right 3.095768e-01	k: 36835	n:120000
KS ci ratio: 1.100284e-01	ci left: 9.890441e-03	ci right 1.105007e-02	k: 1255	n:120000
ANKRD36B   120000 perm   35 sec   (3411 perm/sec)   p_kst 1.045833e-02   p_cons 3.069583e-01   p_joint 1.347833e-01

Joint ci ratio: 2.753398e-02	ci left: 1.330244e-01	ci right 1.367458e-01	k: 17534	n:130000
Cons ci ratio: 1.632114e-02	ci left: 3.048385e-01	ci right 3.098624e-01	k: 39955	n:130000
KS ci ratio: 1.058167e-01	ci left: 9.893077e-03	ci right 1.100585e-02	k: 1357	n:130000
ANKRD36B   130000 perm   39 sec   (3359 perm/sec)   p_kst 1.043846e-02   p_cons 3.073462e-01   p_joint 1.348769e-01

Joint ci ratio: 2.572618e-02	ci left: 1.404170e-01	ci right 1.440835e-01	k: 19914	n:140000
Cons ci ratio: 1.570730e-02	ci left: 3.054752e-01	ci right 3.103185e-01	k: 43105	n:140000
KS ci ratio: 1.013552e-01	ci left: 1.003532e-02	ci right 1.111366e-02	k: 1479	n:140000
ANKRD36B   140000 perm   42 sec   (3306 perm/sec)   p_kst 1.056429e-02   p_cons 3.078929e-01   p_joint 1.422429e-01

Joint ci ratio: 2.443515e-02	ci left: 1.446544e-01	ci right 1.482393e-01	k: 21966	n:150000
Cons ci ratio: 1.517089e-02	ci left: 3.056641e-01	ci right 3.103433e-01	k: 46200	n:150000
KS ci ratio: 9.857119e-02	ci left: 9.918771e-03	ci right 1.095362e-02	k: 1564	n:150000
ANKRD36B   150000 perm   46 sec   (3257 perm/sec)   p_kst 1.042667e-02   p_cons 3.080000e-01   p_joint 1.464400e-01

Outputting figure to mutsig2_images.part000000000008/ANKRD36B.2_4234_150000_0.010427_0.308_0.14644.png
                gene_name: ANKRD36B
               theta_stop: 0.099 
                    nperm: 150000 
                     p_ks: 0.010 
        ci_ks_bounds_left: 0.0099 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 78 percent done.
ANKRD44
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.938381e-02	ci left: 1.540423e-01	ci right 1.685555e-01	k: 1612	n:10000
KS ci ratio: 1.973534e-02	ci left: 7.897918e-01	ci right 8.056344e-01	k: 7978	n:10000
ANKRD44   10000 perm   2 sec   (5549 perm/sec)   p_kst 7.978000e-01   p_cons 1.612000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000008/ANKRD44.2_2860_10000_0.7978_0.1612_1.png
                gene_name: ANKRD44
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
ANKRD57
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.741968e-03	ci left: 9.483556e-01	ci right 9.567782e-01	k: 9527	n:10000
Cons ci ratio: 4.087600e-02	ci left: 4.691661e-01	ci right 4.888461e-01	k: 4790	n:10000
KS ci ratio: 5.464026e-02	ci left: 3.304153e-01	ci right 3.490782e-01	k: 3397	n:10000
ANKRD57   10000 perm   1 sec   (6683 perm/sec)   p_kst 3.397000e-01   p_cons 4.790000e-01   p_joint 9.527000e-01

Outputting figure to mutsig2_images.part000000000008/ANKRD57.2_1582_10000_0.3397_0.479_0.9527.png
                gene_name: ANKRD57
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 82 percent done.
ANKS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.638534e-02	ci left: 8.441744e-01	ci right 8.582204e-01	k: 8513	n:10000
Cons ci ratio: 4.628462e-02	ci left: 4.079093e-01	ci right 4.273387e-01	k: 4176	n:10000
KS ci ratio: 2.721712e-02	ci left: 6.654179e-01	ci right 6.838802e-01	k: 6747	n:10000
ANKS3   10000 perm   2 sec   (6026 perm/sec)   p_kst 6.747000e-01   p_cons 4.176000e-01   p_joint 8.513000e-01

Outputting figure to mutsig2_images.part000000000008/ANKS3.2_2031_10000_0.6747_0.4176_0.8513.png
                gene_name: ANKS3
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 84 percent done.
ANKS4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.957012e-02	ci left: 7.925305e-01	ci right 8.082941e-01	k: 8005	n:10000
Cons ci ratio: 4.420689e-02	ci left: 4.303394e-01	ci right 4.498955e-01	k: 4401	n:10000
KS ci ratio: 3.271458e-02	ci left: 5.796832e-01	ci right 5.990647e-01	k: 5894	n:10000
ANKS4B   10000 perm   1 sec   (6962 perm/sec)   p_kst 5.894000e-01   p_cons 4.401000e-01   p_joint 8.005000e-01

Outputting figure to mutsig2_images.part000000000008/ANKS4B.2_1262_10000_0.5894_0.4401_0.8005.png
                gene_name: ANKS4B
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 86 percent done.
ANO10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.943528e-02	ci left: 7.947624e-01	ci right 8.104609e-01	k: 8027	n:10000
Cons ci ratio: 4.256777e-02	ci left: 4.489967e-01	ci right 4.686273e-01	k: 4588	n:10000
KS ci ratio: 4.000184e-02	ci left: 4.799564e-01	ci right 4.996496e-01	k: 4898	n:10000
ANO10   10000 perm   2 sec   (6096 perm/sec)   p_kst 4.898000e-01   p_cons 4.588000e-01   p_joint 8.027000e-01

Outputting figure to mutsig2_images.part000000000008/ANO10.2_2031_10000_0.4898_0.4588_0.8027.png
                gene_name: ANO10
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 88 percent done.
ANO7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.905420e-02	ci left: 8.010545e-01	ci right 8.165651e-01	k: 8089	n:10000
KS ci ratio: 2.747163e-02	ci left: 6.612896e-01	ci right 6.798110e-01	k: 6706	n:10000
ANO7   10000 perm   2 sec   (5530 perm/sec)   p_kst 6.706000e-01   p_cons 8.089000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000008/ANO7.2_2974_10000_0.6706_0.8089_1.png
                gene_name: ANO7
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
ANP32C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.662392e-02	ci left: 6.750875e-01	ci right 6.934051e-01	k: 6843	n:10000
KS ci ratio: 8.227486e-02	ci left: 1.773337e-01	ci right 1.926503e-01	k: 1849	n:10000
ANP32C   10000 perm   1 sec   (7004 perm/sec)   p_kst 1.849000e-01   p_cons 6.843000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000008/ANP32C.2_708_10000_0.1849_0.6843_1.png
                gene_name: ANP32C
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
ANTXR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.426589e-02	ci left: 5.570197e-01	ci right 5.765413e-01	k: 5668	n:10000
Cons ci ratio: 2.437784e-02	ci left: 7.121969e-01	ci right 7.298742e-01	k: 7211	n:10000
KS ci ratio: 4.997652e-02	ci left: 3.712686e-01	ci right 3.904009e-01	k: 3808	n:10000
ANTXR2   10000 perm   2 sec   (6330 perm/sec)   p_kst 3.808000e-01   p_cons 7.211000e-01   p_joint 5.668000e-01

Outputting figure to mutsig2_images.part000000000008/ANTXR2.2_1577_10000_0.3808_0.7211_0.5668.png
                gene_name: ANTXR2
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 94 percent done.
ANXA11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.807515e-02	ci left: 3.038177e-01	ci right 3.220914e-01	k: 3129	n:10000
Cons ci ratio: 4.801080e-02	ci left: 3.902789e-01	ci right 4.095794e-01	k: 3999	n:10000
KS ci ratio: 1.094953e-01	ci left: 1.073461e-01	ci right 1.198799e-01	k: 1135	n:10000
ANXA11   10000 perm   2 sec   (6325 perm/sec)   p_kst 1.135000e-01   p_cons 3.999000e-01   p_joint 3.129000e-01

Joint ci ratio: 1.740958e-02	ci left: 7.108015e-01	ci right 7.233353e-01	k: 14342	n:20000
Cons ci ratio: 3.413306e-02	ci left: 3.905584e-01	ci right 4.041714e-01	k: 7947	n:20000
KS ci ratio: 7.756119e-02	ci left: 1.088404e-01	ci right 1.176724e-01	k: 2264	n:20000
ANXA11   20000 perm   4 sec   (5513 perm/sec)   p_kst 1.132000e-01   p_cons 3.973500e-01   p_joint 7.171000e-01

Outputting figure to mutsig2_images.part000000000008/ANXA11.2_1574_20000_0.1132_0.39735_0.7171.png
                gene_name: ANXA11
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.72 

Current progress: 96 percent done.
ANXA13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.548769e-01	ci left: 5.552036e-02	ci right 6.493785e-02	k: 601	n:10000
Cons ci ratio: 2.432992e-01	ci left: 2.221701e-02	ci right 2.846368e-02	k: 252	n:10000
KS ci ratio: 4.920140e-02	ci left: 3.786320e-01	ci right 3.978331e-01	k: 3882	n:10000
ANXA13   10000 perm   2 sec   (6575 perm/sec)   p_kst 3.882000e-01   p_cons 2.520000e-02   p_joint 6.010000e-02

Joint ci ratio: 5.378563e-02	ci left: 2.041746e-01	ci right 2.155099e-01	k: 4196	n:20000
Cons ci ratio: 1.645238e-01	ci left: 2.532545e-02	ci right 2.991327e-02	k: 551	n:20000
KS ci ratio: 3.469175e-02	ci left: 3.828330e-01	ci right 3.963991e-01	k: 7792	n:20000
ANXA13   20000 perm   3 sec   (5735 perm/sec)   p_kst 3.896000e-01   p_cons 2.755000e-02   p_joint 2.098000e-01

Joint ci ratio: 3.831753e-02	ci left: 2.536521e-01	ci right 2.635947e-01	k: 7758	n:30000
Cons ci ratio: 1.308797e-01	ci left: 2.713018e-02	ci right 3.096175e-02	k: 870	n:30000
KS ci ratio: 2.819801e-02	ci left: 3.862369e-01	ci right 3.973174e-01	k: 11753	n:30000
ANXA13   30000 perm   6 sec   (5434 perm/sec)   p_kst 3.917667e-01   p_cons 2.900000e-02   p_joint 2.586000e-01

Joint ci ratio: 3.630561e-02	ci left: 2.215611e-01	ci right 2.297788e-01	k: 9026	n:40000
Cons ci ratio: 1.145361e-01	ci left: 2.681823e-02	ci right 3.010070e-02	k: 1137	n:40000
KS ci ratio: 2.446249e-02	ci left: 3.861636e-01	ci right 3.957522e-01	k: 15638	n:40000
ANXA13   40000 perm   8 sec   (5225 perm/sec)   p_kst 3.909500e-01   p_cons 2.842500e-02   p_joint 2.256500e-01

Joint ci ratio: 4.422373e-02	ci left: 1.327886e-01	ci right 1.388137e-01	k: 6789	n:50000
Cons ci ratio: 1.020941e-01	ci left: 2.717594e-02	ci right 3.011913e-02	k: 1431	n:50000
KS ci ratio: 2.177528e-02	ci left: 3.889548e-01	ci right 3.975376e-01	k: 19662	n:50000
ANXA13   50000 perm   10 sec   (5062 perm/sec)   p_kst 3.932400e-01   p_cons 2.862000e-02   p_joint 1.357800e-01

Joint ci ratio: 4.184156e-02	ci left: 1.249401e-01	ci right 1.302960e-01	k: 7656	n:60000
Cons ci ratio: 9.329393e-02	ci left: 2.724824e-02	ci right 2.993095e-02	k: 1714	n:60000
KS ci ratio: 1.982162e-02	ci left: 3.906860e-01	ci right 3.985242e-01	k: 23676	n:60000
ANXA13   60000 perm   12 sec   (4924 perm/sec)   p_kst 3.946000e-01   p_cons 2.856667e-02   p_joint 1.276000e-01

Outputting figure to mutsig2_images.part000000000008/ANXA13.2_1122_60000_0.3946_0.028567_0.1276.png
                gene_name: ANXA13
               theta_stop: 0.093 
                    nperm: 60000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.029 
      ci_cons_bounds_left: 0.027 
     ci_cons_bounds_right: 0.030 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 98 percent done.
AOC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.130334e-02	ci left: 9.179100e-01	ci right 9.284419e-01	k: 9233	n:10000
Cons ci ratio: 2.255936e-02	ci left: 7.426043e-01	ci right 7.596492e-01	k: 7512	n:10000
KS ci ratio: 2.640239e-02	ci left: 6.787147e-01	ci right 6.969757e-01	k: 6879	n:10000
AOC2   10000 perm   2 sec   (6233 perm/sec)   p_kst 6.879000e-01   p_cons 7.512000e-01   p_joint 9.233000e-01

Outputting figure to mutsig2_images.part000000000008/AOC2.2_2287_10000_0.6879_0.7512_0.9233.png
                gene_name: AOC2
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000008
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 8 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1419>
Subject: Job 8003824: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1419>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000009> was used as the working directory.
Started at Sun Nov 11 15:03:25 2012
Results reported at Sun Nov 11 15:16:26 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000009.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000009.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 9  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000009.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    928.58 sec.
    Max Memory :      4723 MB
    Max Swap   :      7067 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
9
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 9
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 9: processing genes 725 - 814
Calculating significance of each gene.
Using projection method.
725	AP1M1	4.238335e-01
726	AP1M2	7.309614e-01
727	AP1S1	3.160909e-02
728	AP1S2	1
729	AP1S3	4.269729e-01
730	AP2A1	7.401880e-01
731	AP2A2	1
732	AP2B1	8.895536e-01
733	AP2M1	7.758668e-01
734	AP2S1	1
735	AP3B1	7.349623e-01
736	AP3B2	7.564231e-02
737	AP3D1	9.770453e-01
738	AP3M1	7.960210e-01
739	AP3M2	5.635088e-01
740	AP3S1	1
741	AP3S2	1
742	AP4B1	9.298765e-01
743	AP4E1	9.743354e-01
744	AP4M1	5.623336e-01
745	AP4S1	3.247067e-01
746	APAF1	6.405788e-01
747	APBA1	6.349707e-01
748	APBA2	9.480412e-01
749	APBA3	1
750	APBB1	9.008033e-01
751	APBB1IP	1.210376e-01
752	APBB2	1
753	APBB3	1
754	APC	8.613803e-01
755	APC2	8.455051e-01
756	APCDD1	1
757	APCDD1L	3.452744e-01
758	APCS	3.396724e-01
759	APEH	8.758526e-01
760	APEX1	1
761	APEX2	6.597735e-01
762	APH1A	1
763	APH1B	1
764	API5	8.791298e-01
765	APIP	1
766	APITD1	1
767	APLF	5.459044e-01
768	APLNR	1.520219e-03
769	APLP1	7.063325e-01
770	APLP2	1
771	APOA1	1
772	APOA1BP	2.328229e-01
773	APOA2	1.185975e-01
774	APOA4	2.357101e-01
775	APOA5	1.666166e-01
776	APOB	1
777	APOB48R	6.846154e-01
778	APOBEC1	1.266554e-04
779	APOBEC2	1.687840e-01
780	APOBEC3A	1
781	APOBEC3B	1
782	APOBEC3C	1
783	APOBEC3D	6.542359e-01
784	APOBEC3F	7.568316e-01
785	APOBEC3G	1
786	APOBEC3H	4.494930e-01
787	APOBEC4	1.666087e-01
788	APOC1	1
789	APOC2	6.788214e-02
790	APOC3	5.015885e-02
791	APOC4	1
792	APOD	1
793	APOE	1
794	APOF	7.642507e-01
795	APOH	6.887021e-01
796	APOL1	7.409528e-01
797	APOL2	5.637348e-01
798	APOL3	1
799	APOL4	1
800	APOL5	1
801	APOL6	7.017041e-01
802	APOLD1	2.550668e-01
803	APOM	1
804	APOO	1.775561e-01
805	APOOL	1
806	APP	9.375917e-01
807	APPBP2	1.986488e-01
808	APPL1	9.466818e-01
809	APPL2	1.228407e-01
810	APRT	1
811	APTX	7.137654e-01
812	AQP1	2.519913e-01
813	AQP10	3.391087e-01
814	AQP11	5.892209e-01
Done

Running MutSig 2:
Scatter job 9: processing genes 725 - 814
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
APOB
Processing conservation and coverage...
72% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.530898e-02	ci left: 4.182745e-01	ci right 4.377675e-01	k: 4280	n:10000
Cons ci ratio: 3.893634e-02	ci left: 4.934506e-01	ci right 5.131474e-01	k: 5033	n:10000
KS ci ratio: 6.614875e-02	ci left: 2.512260e-01	ci right 2.685141e-01	k: 2598	n:10000
APOB   10000 perm   6 sec   (1726 perm/sec)   p_kst 2.598000e-01   p_cons 5.033000e-01   p_joint 4.280000e-01

Outputting figure to mutsig2_images.part000000000009/APOB.30_13808_10000_0.2598_0.5033_0.428.png
                gene_name: APOB
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 3 percent done.
APBA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.099927e-02	ci left: 6.055814e-01	ci right 6.247515e-01	k: 6152	n:10000
KS ci ratio: 1.430680e-02	ci left: 8.760270e-01	ci right 8.887493e-01	k: 8825	n:10000
APBA2   10000 perm   2 sec   (4171 perm/sec)   p_kst 8.825000e-01   p_cons 6.152000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000009/APBA2.11_2298_10000_0.8825_0.6152_1.png
                gene_name: APBA2
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 5 percent done.
APC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.545109e-02	ci left: 2.552813e-01	ci right 2.726564e-01	k: 2639	n:10000
Cons ci ratio: 3.881196e-02	ci left: 4.950504e-01	ci right 5.147467e-01	k: 5049	n:10000
KS ci ratio: 9.291121e-02	ci left: 1.440348e-01	ci right 1.581691e-01	k: 1510	n:10000
APC   10000 perm   3 sec   (3002 perm/sec)   p_kst 1.510000e-01   p_cons 5.049000e-01   p_joint 2.639000e-01

Outputting figure to mutsig2_images.part000000000009/APC.9_8592_10000_0.151_0.5049_0.2639.png
                gene_name: APC
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 8 percent done.
AP3B2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.648198e-02	ci left: 5.259661e-01	ci right 5.456130e-01	k: 5358	n:10000
Cons ci ratio: 2.795168e-02	ci left: 6.535385e-01	ci right 6.721666e-01	k: 6629	n:10000
KS ci ratio: 5.188359e-02	ci left: 3.538645e-01	ci right 3.728152e-01	k: 3633	n:10000
AP3B2   10000 perm   2 sec   (4556 perm/sec)   p_kst 3.633000e-01   p_cons 6.629000e-01   p_joint 5.358000e-01

Outputting figure to mutsig2_images.part000000000009/AP3B2.8_3277_10000_0.3633_0.6629_0.5358.png
                gene_name: AP3B2
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 11 percent done.
APBB1IP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.848730e-02	ci left: 4.992504e-01	ci right 5.189443e-01	k: 5091	n:10000
Cons ci ratio: 1.293223e-02	ci left: 8.959025e-01	ci right 9.076623e-01	k: 9019	n:10000
KS ci ratio: 5.897850e-02	ci left: 2.972729e-01	ci right 3.154400e-01	k: 3063	n:10000
APBB1IP   10000 perm   2 sec   (4817 perm/sec)   p_kst 3.063000e-01   p_cons 9.019000e-01   p_joint 5.091000e-01

Outputting figure to mutsig2_images.part000000000009/APBB1IP.8_2053_10000_0.3063_0.9019_0.5091.png
                gene_name: APBB1IP
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 13 percent done.
APLNR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.172038e-02	ci left: 7.566645e-01	ci right 7.733809e-01	k: 7651	n:10000
Cons ci ratio: 2.587498e-02	ci left: 6.873824e-01	ci right 7.055030e-01	k: 6965	n:10000
KS ci ratio: 4.995533e-02	ci left: 3.714676e-01	ci right 3.906018e-01	k: 3810	n:10000
APLNR   10000 perm   2 sec   (5473 perm/sec)   p_kst 3.810000e-01   p_cons 6.965000e-01   p_joint 7.651000e-01

Outputting figure to mutsig2_images.part000000000009/APLNR.7_1147_10000_0.381_0.6965_0.7651.png
                gene_name: APLNR
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 16 percent done.
APOBEC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.771470e-02	ci left: 2.424265e-01	ci right 2.595188e-01	k: 2509	n:10000
Cons ci ratio: 6.824099e-02	ci left: 2.395602e-01	ci right 2.565868e-01	k: 2480	n:10000
KS ci ratio: 7.714643e-02	ci left: 1.972229e-01	ci right 2.131492e-01	k: 2051	n:10000
APOBEC1   10000 perm   2 sec   (5364 perm/sec)   p_kst 2.051000e-01   p_cons 2.480000e-01   p_joint 2.509000e-01

Outputting figure to mutsig2_images.part000000000009/APOBEC1.7_731_10000_0.2051_0.248_0.2509.png
                gene_name: APOBEC1
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 18 percent done.
APPL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.295982e-02	ci left: 2.157611e-01	ci right 2.322000e-01	k: 2239	n:10000
Cons ci ratio: 3.345662e-02	ci left: 5.687500e-01	ci right 5.882042e-01	k: 5785	n:10000
KS ci ratio: 9.813331e-02	ci left: 1.308067e-01	ci right 1.444052e-01	k: 1375	n:10000
APPL2   10000 perm   2 sec   (4726 perm/sec)   p_kst 1.375000e-01   p_cons 5.785000e-01   p_joint 2.239000e-01

Outputting figure to mutsig2_images.part000000000009/APPL2.6_2079_10000_0.1375_0.5785_0.2239.png
                gene_name: APPL2
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 21 percent done.
AP3D1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.052336e-02	ci left: 6.129143e-01	ci right 6.320143e-01	k: 6225	n:10000
KS ci ratio: 2.488745e-02	ci left: 7.037201e-01	ci right 7.215559e-01	k: 7127	n:10000
AP3D1   10000 perm   2 sec   (4552 perm/sec)   p_kst 7.127000e-01   p_cons 6.225000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000009/AP3D1.4_3740_10000_0.7127_0.6225_1.png
                gene_name: AP3D1
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 24 percent done.
APAF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.298561e-02	ci left: 5.756705e-01	ci right 5.950798e-01	k: 5854	n:10000
Cons ci ratio: 1.260105e-02	ci left: 9.005222e-01	ci right 9.120399e-01	k: 9064	n:10000
KS ci ratio: 5.818335e-02	ci left: 3.030243e-01	ci right 3.212853e-01	k: 3121	n:10000
APAF1   10000 perm   2 sec   (4516 perm/sec)   p_kst 3.121000e-01   p_cons 9.064000e-01   p_joint 5.854000e-01

Outputting figure to mutsig2_images.part000000000009/APAF1.4_3851_10000_0.3121_0.9064_0.5854.png
                gene_name: APAF1
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 26 percent done.
API5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.225767e-02	ci left: 7.476605e-01	ci right 7.645900e-01	k: 7562	n:10000
Cons ci ratio: 1.092424e-02	ci left: 9.227580e-01	ci right 9.329911e-01	k: 9280	n:10000
KS ci ratio: 3.866476e-02	ci left: 4.969503e-01	ci right 5.166457e-01	k: 5068	n:10000
API5   10000 perm   2 sec   (5051 perm/sec)   p_kst 5.068000e-01   p_cons 9.280000e-01   p_joint 7.562000e-01

Outputting figure to mutsig2_images.part000000000009/API5.4_1631_10000_0.5068_0.928_0.7562.png
                gene_name: API5
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.76 

Current progress: 29 percent done.
APPBP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.153651e-01	ci left: 9.749841e-02	ci right 1.095337e-01	k: 1034	n:10000
Cons ci ratio: 2.491176e-02	ci left: 7.033165e-01	ci right 7.211597e-01	k: 7123	n:10000
KS ci ratio: 1.179891e-01	ci left: 9.350575e-02	ci right 1.053288e-01	k: 993	n:10000
APPBP2   10000 perm   2 sec   (5241 perm/sec)   p_kst 9.930000e-02   p_cons 7.123000e-01   p_joint 1.034000e-01

Joint ci ratio: 7.679852e-02	ci left: 1.108065e-01	ci right 1.197057e-01	k: 2304	n:20000
Cons ci ratio: 1.847667e-02	ci left: 6.859011e-01	ci right 6.987429e-01	k: 13847	n:20000
KS ci ratio: 8.469174e-02	ci left: 9.263781e-02	ci right 1.008798e-01	k: 1934	n:20000
APPBP2   20000 perm   4 sec   (4686 perm/sec)   p_kst 9.670000e-02   p_cons 6.923500e-01   p_joint 1.152000e-01

Outputting figure to mutsig2_images.part000000000009/APPBP2.4_1810_20000_0.0967_0.69235_0.1152.png
                gene_name: APPBP2
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.097 
        ci_ks_bounds_left: 0.093 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 32 percent done.
AP3B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.179607e-02	ci left: 4.580809e-01	ci right 4.777378e-01	k: 4679	n:10000
KS ci ratio: 1.756598e-02	ci left: 8.253397e-01	ci right 8.400660e-01	k: 8328	n:10000
AP3B1   10000 perm   2 sec   (5042 perm/sec)   p_kst 8.328000e-01   p_cons 4.679000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000009/AP3B1.3_3393_10000_0.8328_0.4679_1.png
                gene_name: AP3B1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 34 percent done.
APBA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.803927e-02	ci left: 6.521295e-01	ci right 6.707764e-01	k: 6615	n:10000
Cons ci ratio: 3.775496e-02	ci left: 5.088528e-01	ci right 5.285363e-01	k: 5187	n:10000
KS ci ratio: 6.225664e-02	ci left: 2.749777e-01	ci right 2.927484e-01	k: 2838	n:10000
APBA1   10000 perm   2 sec   (5038 perm/sec)   p_kst 2.838000e-01   p_cons 5.187000e-01   p_joint 6.615000e-01

Outputting figure to mutsig2_images.part000000000009/APBA1.3_2562_10000_0.2838_0.5187_0.6615.png
                gene_name: APBA1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 37 percent done.
APOA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.498200e-01	ci left: 1.023265e-02	ci right 1.465817e-02	k: 123	n:10000
Cons ci ratio: 4.602876e-01	ci left: 5.549202e-03	ci right 8.947365e-03	k: 71	n:10000
KS ci ratio: 1.044753e-01	ci left: 1.169164e-01	ci right 1.299039e-01	k: 1233	n:10000
APOA4   10000 perm   2 sec   (6115 perm/sec)   p_kst 1.233000e-01   p_cons 7.100000e-03   p_joint 1.230000e-02

Joint ci ratio: 2.387411e-01	ci left: 1.171137e-02	ci right 1.493242e-02	k: 265	n:20000
Cons ci ratio: 3.660847e-01	ci left: 4.658600e-03	ci right 6.788973e-03	k: 113	n:20000
KS ci ratio: 7.463747e-02	ci left: 1.166581e-01	ci right 1.257524e-01	k: 2423	n:20000
APOA4   20000 perm   4 sec   (5351 perm/sec)   p_kst 1.211500e-01   p_cons 5.650000e-03   p_joint 1.325000e-02

Joint ci ratio: 2.374838e-01	ci left: 7.931051e-03	ci right 1.009897e-02	k: 269	n:30000
Cons ci ratio: 2.989094e-01	ci left: 4.848747e-03	ci right 6.582421e-03	k: 170	n:30000
KS ci ratio: 6.079899e-02	ci left: 1.179876e-01	ci right 1.254192e-01	k: 3650	n:30000
APOA4   30000 perm   6 sec   (5058 perm/sec)   p_kst 1.216667e-01   p_cons 5.666667e-03   p_joint 8.966667e-03

Joint ci ratio: 2.338615e-01	ci left: 6.159321e-03	ci right 7.813469e-03	k: 278	n:40000
Cons ci ratio: 2.538728e-01	ci left: 5.173036e-03	ci right 6.700031e-03	k: 236	n:40000
KS ci ratio: 5.261672e-02	ci left: 1.186347e-01	ci right 1.250703e-01	k: 4873	n:40000
APOA4   40000 perm   8 sec   (4866 perm/sec)   p_kst 1.218250e-01   p_cons 5.900000e-03   p_joint 6.950000e-03

Joint ci ratio: 2.283346e-01	ci left: 5.190941e-03	ci right 6.547394e-03	k: 292	n:50000
Cons ci ratio: 2.219476e-01	ci left: 5.511867e-03	ci right 6.906397e-03	k: 309	n:50000
KS ci ratio: 4.723201e-02	ci left: 1.182129e-01	ci right 1.239512e-01	k: 6053	n:50000
APOA4   50000 perm   11 sec   (4687 perm/sec)   p_kst 1.210600e-01   p_cons 6.180000e-03   p_joint 5.840000e-03

Joint ci ratio: 2.341361e-01	ci left: 4.105687e-03	ci right 5.209734e-03	k: 278	n:60000
Cons ci ratio: 2.012533e-01	ci left: 5.650879e-03	ci right 6.930915e-03	k: 376	n:60000
KS ci ratio: 4.328916e-02	ci left: 1.176245e-01	ci right 1.228456e-01	k: 7213	n:60000
APOA4   60000 perm   13 sec   (4570 perm/sec)   p_kst 1.202167e-01   p_cons 6.266667e-03   p_joint 4.633333e-03

Joint ci ratio: 2.182893e-01	ci left: 4.085191e-03	ci right 5.099406e-03	k: 320	n:70000
Cons ci ratio: 1.833758e-01	ci left: 5.890813e-03	ci right 7.093502e-03	k: 453	n:70000
KS ci ratio: 4.005727e-02	ci left: 1.179271e-01	ci right 1.227616e-01	k: 8423	n:70000
APOA4   70000 perm   16 sec   (4465 perm/sec)   p_kst 1.203286e-01   p_cons 6.471429e-03   p_joint 4.571429e-03

Joint ci ratio: 1.682756e-01	ci left: 6.170348e-03	ci right 7.315863e-03	k: 538	n:80000
Cons ci ratio: 1.720099e-01	ci left: 5.895018e-03	ci right 7.016225e-03	k: 515	n:80000
KS ci ratio: 3.751765e-02	ci left: 1.178177e-01	ci right 1.223349e-01	k: 9605	n:80000
APOA4   80000 perm   18 sec   (4371 perm/sec)   p_kst 1.200625e-01   p_cons 6.437500e-03   p_joint 6.725000e-03

Joint ci ratio: 1.692896e-01	ci left: 5.420723e-03	ci right 6.433743e-03	k: 532	n:90000
Cons ci ratio: 1.625252e-01	ci left: 5.900084e-03	ci right 6.954330e-03	k: 577	n:90000
KS ci ratio: 3.543117e-02	ci left: 1.175970e-01	ci right 1.218498e-01	k: 10774	n:90000
APOA4   90000 perm   21 sec   (4292 perm/sec)   p_kst 1.197111e-01   p_cons 6.411111e-03   p_joint 5.911111e-03

Joint ci ratio: 1.622956e-01	ci left: 5.329133e-03	ci right 6.279875e-03	k: 579	n:100000
Cons ci ratio: 1.540911e-01	ci left: 5.934346e-03	ci right 6.934606e-03	k: 642	n:100000
KS ci ratio: 3.358306e-02	ci left: 1.178927e-01	ci right 1.219294e-01	k: 11990	n:100000
APOA4   100000 perm   24 sec   (4220 perm/sec)   p_kst 1.199000e-01   p_cons 6.420000e-03   p_joint 5.790000e-03

Joint ci ratio: 1.619183e-01	ci left: 4.870738e-03	ci right 5.737477e-03	k: 582	n:110000
Cons ci ratio: 1.471612e-01	ci left: 5.937260e-03	ci right 6.889045e-03	k: 704	n:110000
KS ci ratio: 3.206732e-02	ci left: 1.176789e-01	ci right 1.215230e-01	k: 13155	n:110000
APOA4   110000 perm   27 sec   (4145 perm/sec)   p_kst 1.195909e-01   p_cons 6.400000e-03   p_joint 5.290909e-03

Joint ci ratio: 1.604403e-01	ci left: 4.552751e-03	ci right 5.354793e-03	k: 593	n:120000
Cons ci ratio: 1.404458e-01	ci left: 5.996820e-03	ci right 6.910611e-03	k: 773	n:120000
KS ci ratio: 3.075937e-02	ci left: 1.173717e-01	ci right 1.210467e-01	k: 14304	n:120000
APOA4   120000 perm   29 sec   (4075 perm/sec)   p_kst 1.192000e-01   p_cons 6.441667e-03   p_joint 4.941667e-03

Joint ci ratio: 1.564220e-01	ci left: 4.431526e-03	ci right 5.190822e-03	k: 624	n:130000
Cons ci ratio: 1.353019e-01	ci left: 5.981143e-03	ci right 6.856477e-03	k: 833	n:130000
KS ci ratio: 2.960700e-02	ci left: 1.170611e-01	ci right 1.205867e-01	k: 15446	n:130000
APOA4   130000 perm   32 sec   (4008 perm/sec)   p_kst 1.188154e-01   p_cons 6.407692e-03   p_joint 4.800000e-03

Joint ci ratio: 1.604974e-01	ci left: 3.902252e-03	ci right 4.589959e-03	k: 593	n:140000
Cons ci ratio: 1.298107e-01	ci left: 6.051168e-03	ci right 6.898039e-03	k: 905	n:140000
KS ci ratio: 2.856240e-02	ci left: 1.168894e-01	ci right 1.202835e-01	k: 16601	n:140000
APOA4   140000 perm   36 sec   (3941 perm/sec)   p_kst 1.185786e-01   p_cons 6.464286e-03   p_joint 4.235714e-03

Joint ci ratio: 1.554764e-01	ci left: 3.891822e-03	ci right 4.554234e-03	k: 632	n:150000
Cons ci ratio: 1.255860e-01	ci left: 6.047887e-03	ci right 6.864700e-03	k: 967	n:150000
KS ci ratio: 2.761492e-02	ci left: 1.167889e-01	ci right 1.200658e-01	k: 17763	n:150000
APOA4   150000 perm   39 sec   (3874 perm/sec)   p_kst 1.184200e-01   p_cons 6.446667e-03   p_joint 4.213333e-03

Joint ci ratio: 1.687183e-01	ci left: 3.078767e-03	ci right 3.651963e-03	k: 537	n:160000
Cons ci ratio: 1.215113e-01	ci left: 6.069651e-03	ci right 6.860893e-03	k: 1033	n:160000
KS ci ratio: 2.675507e-02	ci left: 1.167089e-01	ci right 1.198800e-01	k: 18926	n:160000
APOA4   160000 perm   42 sec   (3812 perm/sec)   p_kst 1.182875e-01   p_cons 6.456250e-03   p_joint 3.356250e-03

Joint ci ratio: 1.356501e-01	ci left: 4.556537e-03	ci right 5.225225e-03	k: 830	n:170000
Cons ci ratio: 1.185709e-01	ci left: 6.009299e-03	ci right 6.772387e-03	k: 1085	n:170000
KS ci ratio: 2.594668e-02	ci left: 1.168327e-01	ci right 1.199098e-01	k: 20122	n:170000
APOA4   170000 perm   45 sec   (3750 perm/sec)   p_kst 1.183647e-01   p_cons 6.382353e-03   p_joint 4.882353e-03

Joint ci ratio: 1.321215e-01	ci left: 4.545021e-03	ci right 5.193306e-03	k: 875	n:180000
Cons ci ratio: 1.156808e-01	ci left: 5.972046e-03	ci right 6.710656e-03	k: 1140	n:180000
KS ci ratio: 2.517927e-02	ci left: 1.171761e-01	ci right 1.201696e-01	k: 21360	n:180000
APOA4   180000 perm   49 sec   (3679 perm/sec)   p_kst 1.186667e-01   p_cons 6.333333e-03   p_joint 4.861111e-03

Joint ci ratio: 1.323664e-01	ci left: 4.290505e-03	ci right 4.903708e-03	k: 872	n:190000
Cons ci ratio: 1.125197e-01	ci left: 5.990073e-03	ci right 6.709324e-03	k: 1205	n:190000
KS ci ratio: 2.453099e-02	ci left: 1.170185e-01	ci right 1.199300e-01	k: 22509	n:190000
APOA4   190000 perm   52 sec   (3620 perm/sec)   p_kst 1.184684e-01   p_cons 6.342105e-03   p_joint 4.589474e-03

Joint ci ratio: 1.104382e-01	ci left: 5.914143e-03	ci right 6.610284e-03	k: 1251	n:200000
Cons ci ratio: 1.099094e-01	ci left: 5.972499e-03	ci right 6.671926e-03	k: 1263	n:200000
KS ci ratio: 2.389369e-02	ci left: 1.171960e-01	ci right 1.200351e-01	k: 23722	n:200000
APOA4   200000 perm   56 sec   (3555 perm/sec)   p_kst 1.186100e-01   p_cons 6.315000e-03   p_joint 6.255000e-03

Joint ci ratio: 1.094048e-01	ci left: 5.743633e-03	ci right 6.412968e-03	k: 1275	n:210000
Cons ci ratio: 1.075546e-01	ci left: 5.947505e-03	ci right 6.628136e-03	k: 1319	n:210000
KS ci ratio: 2.331475e-02	ci left: 1.172580e-01	ci right 1.200288e-01	k: 24914	n:210000
APOA4   210000 perm   60 sec   (3503 perm/sec)   p_kst 1.186381e-01   p_cons 6.280952e-03   p_joint 6.071429e-03

Joint ci ratio: 1.125687e-01	ci left: 5.173122e-03	ci right 5.794562e-03	k: 1205	n:220000
Cons ci ratio: 1.052295e-01	ci left: 5.938207e-03	ci right 6.602175e-03	k: 1378	n:220000
KS ci ratio: 2.274976e-02	ci left: 1.175548e-01	ci right 1.202644e-01	k: 26159	n:220000
APOA4   220000 perm   64 sec   (3451 perm/sec)   p_kst 1.189045e-01   p_cons 6.263636e-03   p_joint 5.477273e-03

Joint ci ratio: 1.117011e-01	ci left: 5.028474e-03	ci right 5.627575e-03	k: 1224	n:230000
Cons ci ratio: 1.030490e-01	ci left: 5.929863e-03	ci right 6.578326e-03	k: 1437	n:230000
KS ci ratio: 2.225806e-02	ci left: 1.175063e-01	ci right 1.201555e-01	k: 27330	n:230000
APOA4   230000 perm   68 sec   (3402 perm/sec)   p_kst 1.188261e-01   p_cons 6.247826e-03   p_joint 5.321739e-03

Joint ci ratio: 1.135929e-01	ci left: 4.656932e-03	ci right 5.221792e-03	k: 1184	n:240000
Cons ci ratio: 1.007956e-01	ci left: 5.946718e-03	ci right 6.581961e-03	k: 1502	n:240000
KS ci ratio: 2.178219e-02	ci left: 1.176034e-01	ci right 1.201974e-01	k: 28535	n:240000
APOA4   240000 perm   72 sec   (3344 perm/sec)   p_kst 1.188958e-01   p_cons 6.258333e-03   p_joint 4.933333e-03

Joint ci ratio: 1.149272e-01	ci left: 4.365704e-03	ci right 4.901880e-03	k: 1157	n:250000
Cons ci ratio: 9.913014e-02	ci left: 5.907743e-03	ci right 6.527789e-03	k: 1553	n:250000
KS ci ratio: 2.132460e-02	ci left: 1.178009e-01	ci right 1.203440e-01	k: 29767	n:250000
APOA4   250000 perm   76 sec   (3302 perm/sec)   p_kst 1.190680e-01   p_cons 6.212000e-03   p_joint 4.628000e-03

Joint ci ratio: 1.131360e-01	ci left: 4.336037e-03	ci right 4.859716e-03	k: 1194	n:260000
Cons ci ratio: 9.720995e-02	ci left: 5.913129e-03	ci right 6.521034e-03	k: 1615	n:260000
KS ci ratio: 2.089200e-02	ci left: 1.180104e-01	ci right 1.205057e-01	k: 31006	n:260000
APOA4   260000 perm   80 sec   (3260 perm/sec)   p_kst 1.192538e-01   p_cons 6.211538e-03   p_joint 4.592308e-03

Joint ci ratio: 1.112900e-01	ci left: 4.319431e-03	ci right 4.832034e-03	k: 1234	n:270000
Cons ci ratio: 9.531149e-02	ci left: 5.929072e-03	ci right 6.526046e-03	k: 1680	n:270000
KS ci ratio: 2.048073e-02	ci left: 1.182455e-01	ci right 1.206960e-01	k: 32256	n:270000
APOA4   270000 perm   84 sec   (3219 perm/sec)   p_kst 1.194667e-01   p_cons 6.222222e-03   p_joint 4.570370e-03

Joint ci ratio: 1.093164e-01	ci left: 4.321446e-03	ci right 4.824607e-03	k: 1279	n:280000
Cons ci ratio: 9.343934e-02	ci left: 5.954448e-03	ci right 6.541557e-03	k: 1748	n:280000
KS ci ratio: 2.010407e-02	ci left: 1.183469e-01	ci right 1.207538e-01	k: 33473	n:280000
APOA4   280000 perm   88 sec   (3172 perm/sec)   p_kst 1.195464e-01   p_cons 6.242857e-03   p_joint 4.567857e-03

Joint ci ratio: 1.126437e-01	ci left: 3.924294e-03	ci right 4.396044e-03	k: 1205	n:290000
Cons ci ratio: 9.182603e-02	ci left: 5.957963e-03	ci right 6.534730e-03	k: 1810	n:290000
KS ci ratio: 1.973680e-02	ci left: 1.185550e-01	ci right 1.209216e-01	k: 34723	n:290000
APOA4   290000 perm   93 sec   (3123 perm/sec)   p_kst 1.197345e-01   p_cons 6.241379e-03   p_joint 4.155172e-03

Joint ci ratio: 1.031247e-01	ci left: 4.546061e-03	ci right 5.043579e-03	k: 1437	n:300000
Cons ci ratio: 9.029350e-02	ci left: 5.961325e-03	ci right 6.528277e-03	k: 1872	n:300000
KS ci ratio: 1.939445e-02	ci left: 1.186898e-01	ci right 1.210176e-01	k: 35955	n:300000
APOA4   300000 perm   97 sec   (3083 perm/sec)   p_kst 1.198500e-01   p_cons 6.240000e-03   p_joint 4.790000e-03

Joint ci ratio: 1.046045e-01	ci left: 4.273702e-03	ci right 4.748537e-03	k: 1397	n:310000
Cons ci ratio: 8.860513e-02	ci left: 5.996091e-03	ci right 6.555135e-03	k: 1944	n:310000
KS ci ratio: 1.907339e-02	ci left: 1.187713e-01	ci right 1.210616e-01	k: 37173	n:310000
APOA4   310000 perm   102 sec   (3041 perm/sec)   p_kst 1.199129e-01   p_cons 6.270968e-03   p_joint 4.506452e-03

Joint ci ratio: 1.066620e-01	ci left: 3.978867e-03	ci right 4.430184e-03	k: 1344	n:320000
Cons ci ratio: 8.737938e-02	ci left: 5.976803e-03	ci right 6.525946e-03	k: 1999	n:320000
KS ci ratio: 1.876888e-02	ci left: 1.188355e-01	ci right 1.210901e-01	k: 38387	n:320000
APOA4   320000 perm   107 sec   (3002 perm/sec)   p_kst 1.199594e-01   p_cons 6.246875e-03   p_joint 4.200000e-03

Joint ci ratio: 1.056870e-01	ci left: 3.932036e-03	ci right 4.373711e-03	k: 1369	n:330000
Cons ci ratio: 8.584655e-02	ci left: 6.009148e-03	ci right 6.551092e-03	k: 2071	n:330000
KS ci ratio: 1.846950e-02	ci left: 1.189987e-01	ci right 1.212201e-01	k: 39635	n:330000
APOA4   330000 perm   111 sec   (2961 perm/sec)   p_kst 1.201061e-01   p_cons 6.275758e-03   p_joint 4.148485e-03

Joint ci ratio: 1.047383e-01	ci left: 3.887978e-03	ci right 4.320541e-03	k: 1394	n:340000
Cons ci ratio: 8.447097e-02	ci left: 6.028152e-03	ci right 6.562668e-03	k: 2139	n:340000
KS ci ratio: 1.817263e-02	ci left: 1.192845e-01	ci right 1.214750e-01	k: 40928	n:340000
APOA4   340000 perm   116 sec   (2923 perm/sec)   p_kst 1.203765e-01   p_cons 6.291176e-03   p_joint 4.100000e-03

Joint ci ratio: 1.047822e-01	ci left: 3.774099e-03	ci right 4.194179e-03	k: 1393	n:350000
Cons ci ratio: 8.350268e-02	ci left: 5.995771e-03	ci right 6.521025e-03	k: 2189	n:350000
KS ci ratio: 1.791181e-02	ci left: 1.192923e-01	ci right 1.214511e-01	k: 42129	n:350000
APOA4   350000 perm   121 sec   (2887 perm/sec)   p_kst 1.203686e-01   p_cons 6.254286e-03   p_joint 3.980000e-03

Joint ci ratio: 1.032382e-01	ci left: 3.782895e-03	ci right 4.197374e-03	k: 1435	n:360000
Cons ci ratio: 8.240051e-02	ci left: 5.989710e-03	ci right 6.507175e-03	k: 2248	n:360000
KS ci ratio: 1.764803e-02	ci left: 1.194659e-01	ci right 1.215958e-01	k: 43390	n:360000
APOA4   360000 perm   126 sec   (2853 perm/sec)   p_kst 1.205278e-01   p_cons 6.244444e-03   p_joint 3.986111e-03

Joint ci ratio: 9.292538e-02	ci left: 4.563991e-03	ci right 5.011386e-03	k: 1770	n:370000
Cons ci ratio: 8.142967e-02	ci left: 5.970780e-03	ci right 6.480243e-03	k: 2302	n:370000
KS ci ratio: 1.739667e-02	ci left: 1.196169e-01	ci right 1.217188e-01	k: 44646	n:370000
APOA4   370000 perm   131 sec   (2819 perm/sec)   p_kst 1.206649e-01   p_cons 6.221622e-03   p_joint 4.783784e-03

Outputting figure to mutsig2_images.part000000000009/APOA4.3_1203_370000_0.12066_0.0062216_0.0047838.png
                gene_name: APOA4
               theta_stop: 0.093 
                    nperm: 370000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.0062 
      ci_cons_bounds_left: 0.0060 
     ci_cons_bounds_right: 0.0065 
                  p_joint: 0.0048 
     ci_joint_bounds_left: 0.0046 
    ci_joint_bounds_right: 0.0050 

Current progress: 39 percent done.
APOA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.013935e-01	ci left: 3.281488e-02	ci right 4.025825e-02	k: 364	n:10000
Cons ci ratio: 1.123029e-01	ci left: 1.024689e-01	ci right 1.147601e-01	k: 1085	n:10000
KS ci ratio: 2.980694e-01	ci left: 1.446512e-02	ci right 1.962175e-02	k: 169	n:10000
APOA5   10000 perm   2 sec   (5910 perm/sec)   p_kst 1.690000e-02   p_cons 1.085000e-01   p_joint 3.640000e-02

Joint ci ratio: 2.216308e-01	ci left: 1.369190e-02	ci right 1.715108e-02	k: 307	n:20000
Cons ci ratio: 7.694953e-02	ci left: 1.104132e-01	ci right 1.192991e-01	k: 2296	n:20000
KS ci ratio: 2.035806e-01	ci left: 1.634521e-02	ci right 2.009673e-02	k: 363	n:20000
APOA5   20000 perm   4 sec   (5151 perm/sec)   p_kst 1.815000e-02   p_cons 1.148000e-01   p_joint 1.535000e-02

Joint ci ratio: 1.483862e-01	ci left: 2.104423e-02	ci right 2.444906e-02	k: 681	n:30000
Cons ci ratio: 6.302071e-02	ci left: 1.106218e-01	ci right 1.178531e-01	k: 3426	n:30000
KS ci ratio: 1.657610e-01	ci left: 1.678143e-02	ci right 1.984620e-02	k: 548	n:30000
APOA5   30000 perm   6 sec   (4873 perm/sec)   p_kst 1.826667e-02   p_cons 1.142000e-01   p_joint 2.270000e-02

Joint ci ratio: 1.116410e-01	ci left: 2.822835e-02	ci right 3.159035e-02	k: 1195	n:40000
Cons ci ratio: 5.468812e-02	ci left: 1.107035e-01	ci right 1.169527e-01	k: 4552	n:40000
KS ci ratio: 1.418846e-01	ci left: 1.739501e-02	ci right 2.007550e-02	k: 748	n:40000
APOA5   40000 perm   8 sec   (4708 perm/sec)   p_kst 1.870000e-02   p_cons 1.138000e-01   p_joint 2.987500e-02

Joint ci ratio: 1.136509e-01	ci left: 2.191768e-02	ci right 2.457807e-02	k: 1161	n:50000
Cons ci ratio: 4.884323e-02	ci left: 1.113257e-01	ci right 1.169192e-01	k: 5705	n:50000
KS ci ratio: 1.274793e-01	ci left: 1.737564e-02	ci right 1.976072e-02	k: 927	n:50000
APOA5   50000 perm   11 sec   (4576 perm/sec)   p_kst 1.854000e-02   p_cons 1.141000e-01   p_joint 2.322000e-02

Joint ci ratio: 1.097124e-01	ci left: 1.968918e-02	ci right 2.199083e-02	k: 1249	n:60000
Cons ci ratio: 4.449306e-02	ci left: 1.119955e-01	ci right 1.171085e-01	k: 6872	n:60000
KS ci ratio: 1.165110e-01	ci left: 1.743679e-02	ci right 1.961013e-02	k: 1110	n:60000
APOA5   60000 perm   14 sec   (4426 perm/sec)   p_kst 1.850000e-02   p_cons 1.145333e-01   p_joint 2.081667e-02

Joint ci ratio: 1.220847e-01	ci left: 1.362748e-02	ci right 1.541310e-02	k: 1015	n:70000
Cons ci ratio: 4.124636e-02	ci left: 1.119235e-01	ci right 1.166514e-01	k: 7999	n:70000
KS ci ratio: 1.092139e-01	ci left: 1.708358e-02	ci right 1.907094e-02	k: 1264	n:70000
APOA5   70000 perm   16 sec   (4318 perm/sec)   p_kst 1.805714e-02   p_cons 1.142714e-01   p_joint 1.450000e-02

Joint ci ratio: 1.423690e-01	ci left: 8.718794e-03	ci right 1.006714e-02	k: 750	n:80000
Cons ci ratio: 4.058165e-02	ci left: 1.023264e-01	ci right 1.065773e-01	k: 8355	n:80000
KS ci ratio: 1.018991e-01	ci left: 1.723621e-02	ci right 1.909897e-02	k: 1452	n:80000
APOA5   80000 perm   19 sec   (4229 perm/sec)   p_kst 1.815000e-02   p_cons 1.044375e-01   p_joint 9.375000e-03

Joint ci ratio: 1.121194e-01	ci left: 1.264817e-02	ci right 1.416122e-02	k: 1205	n:90000
Cons ci ratio: 3.833709e-02	ci left: 1.020790e-01	ci right 1.060799e-01	k: 9366	n:90000
KS ci ratio: 9.690886e-02	ci left: 1.698955e-02	ci right 1.873061e-02	k: 1606	n:90000
APOA5   90000 perm   22 sec   (4153 perm/sec)   p_kst 1.784444e-02   p_cons 1.040667e-01   p_joint 1.338889e-02

Joint ci ratio: 1.145250e-01	ci left: 1.091639e-02	ci right 1.225217e-02	k: 1157	n:100000
Cons ci ratio: 3.637129e-02	ci left: 1.021740e-01	ci right 1.059690e-01	k: 10406	n:100000
KS ci ratio: 9.174133e-02	ci left: 1.710678e-02	ci right 1.876135e-02	k: 1792	n:100000
APOA5   100000 perm   25 sec   (4080 perm/sec)   p_kst 1.792000e-02   p_cons 1.040600e-01   p_joint 1.157000e-02

Joint ci ratio: 1.026584e-01	ci left: 1.240980e-02	ci right 1.376150e-02	k: 1438	n:110000
Cons ci ratio: 3.294386e-02	ci left: 1.121546e-01	ci right 1.159203e-01	k: 12543	n:110000
KS ci ratio: 8.768270e-02	ci left: 1.706239e-02	ci right 1.863591e-02	k: 1962	n:110000
APOA5   110000 perm   28 sec   (3997 perm/sec)   p_kst 1.783636e-02   p_cons 1.140273e-01   p_joint 1.307273e-02

Joint ci ratio: 8.779457e-02	ci left: 1.562371e-02	ci right 1.706647e-02	k: 1960	n:120000
Cons ci ratio: 3.161489e-02	ci left: 1.117684e-01	ci right 1.153670e-01	k: 13627	n:120000
KS ci ratio: 8.417934e-02	ci left: 1.700226e-02	ci right 1.850451e-02	k: 2129	n:120000
APOA5   120000 perm   30 sec   (3937 perm/sec)   p_kst 1.774167e-02   p_cons 1.135583e-01   p_joint 1.633333e-02

Outputting figure to mutsig2_images.part000000000009/APOA5.3_1113_120000_0.017742_0.11356_0.016333.png
                gene_name: APOA5
               theta_stop: 0.088 
                    nperm: 120000 
                     p_ks: 0.018 
        ci_ks_bounds_left: 0.017 
       ci_ks_bounds_right: 0.019 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.016 
     ci_joint_bounds_left: 0.016 
    ci_joint_bounds_right: 0.017 

Current progress: 42 percent done.
APOBEC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.692647e-03	ci left: 9.892795e-01	ci right 9.930260e-01	k: 9913	n:10000
KS ci ratio: 2.570378e-02	ci left: 6.902052e-01	ci right 7.082786e-01	k: 6993	n:10000
APOBEC4   10000 perm   2 sec   (5893 perm/sec)   p_kst 6.993000e-01   p_cons 9.913000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000009/APOBEC4.3_1108_10000_0.6993_0.9913_1.png
                gene_name: APOBEC4
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 45 percent done.
APOO
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.690855e-02	ci left: 4.014334e-01	ci right 4.208184e-01	k: 4111	n:10000
Cons ci ratio: 8.837333e-02	ci left: 1.570859e-01	ci right 1.717101e-01	k: 1643	n:10000
KS ci ratio: 5.413272e-02	ci left: 3.345866e-01	ci right 3.533044e-01	k: 3439	n:10000
APOO   10000 perm   2 sec   (6054 perm/sec)   p_kst 3.439000e-01   p_cons 1.643000e-01   p_joint 4.111000e-01

Outputting figure to mutsig2_images.part000000000009/APOO.3_629_10000_0.3439_0.1643_0.4111.png
                gene_name: APOO
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 47 percent done.
AP1M1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.413272e-02	ci left: 3.345866e-01	ci right 3.533044e-01	k: 3439	n:10000
KS ci ratio: 1.950272e-02	ci left: 7.936464e-01	ci right 8.093775e-01	k: 8016	n:10000
AP1M1   10000 perm   2 sec   (6139 perm/sec)   p_kst 8.016000e-01   p_cons 3.439000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000009/AP1M1.2_1360_10000_0.8016_0.3439_1.png
                gene_name: AP1M1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
AP1S1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.685487e-02	ci left: 8.367382e-01	ci right 8.510609e-01	k: 8440	n:10000
Cons ci ratio: 1.720538e-02	ci left: 8.311391e-01	ci right 8.456632e-01	k: 8385	n:10000
KS ci ratio: 5.051047e-02	ci left: 3.662946e-01	ci right 3.853777e-01	k: 3758	n:10000
AP1S1   10000 perm   1 sec   (6704 perm/sec)   p_kst 3.758000e-01   p_cons 8.385000e-01   p_joint 8.440000e-01

Outputting figure to mutsig2_images.part000000000009/AP1S1.2_497_10000_0.3758_0.8385_0.844.png
                gene_name: AP1S1
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 53 percent done.
AP2A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.543521e-02	ci left: 6.946419e-01	ci right 7.126393e-01	k: 7037	n:10000
Cons ci ratio: 4.583094e-02	ci left: 4.126927e-01	ci right 4.321525e-01	k: 4224	n:10000
KS ci ratio: 3.623340e-02	ci left: 5.293701e-01	ci right 5.490070e-01	k: 5392	n:10000
AP2A1   10000 perm   2 sec   (5029 perm/sec)   p_kst 5.392000e-01   p_cons 4.224000e-01   p_joint 7.037000e-01

Outputting figure to mutsig2_images.part000000000009/AP2A1.2_3030_10000_0.5392_0.4224_0.7037.png
                gene_name: AP2A1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 55 percent done.
AP2B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.308937e-01	ci left: 7.688883e-02	ci right 8.775595e-02	k: 822	n:10000
Cons ci ratio: 1.383594e-01	ci left: 6.913757e-02	ci right 7.951204e-02	k: 742	n:10000
KS ci ratio: 8.552514e-02	ci left: 1.661239e-01	ci right 1.810667e-01	k: 1735	n:10000
AP2B1   10000 perm   2 sec   (5451 perm/sec)   p_kst 1.735000e-01   p_cons 7.420000e-02   p_joint 8.220000e-02

Joint ci ratio: 5.559287e-02	ci left: 1.935353e-01	ci right 2.046523e-01	k: 3981	n:20000
Cons ci ratio: 9.808669e-02	ci left: 7.031150e-02	ci right 7.761295e-02	k: 1478	n:20000
KS ci ratio: 6.039211e-02	ci left: 1.687192e-01	ci right 1.792758e-01	k: 3479	n:20000
AP2B1   20000 perm   4 sec   (4802 perm/sec)   p_kst 1.739500e-01   p_cons 7.390000e-02   p_joint 1.990500e-01

Outputting figure to mutsig2_images.part000000000009/AP2B1.2_2940_20000_0.17395_0.0739_0.19905.png
                gene_name: AP2B1
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.074 
      ci_cons_bounds_left: 0.070 
     ci_cons_bounds_right: 0.078 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 58 percent done.
AP3M2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.963012e-01	ci left: 1.465041e-02	ci right 1.983629e-02	k: 171	n:10000
Cons ci ratio: 3.527114e-01	ci left: 1.005013e-02	ci right 1.444087e-02	k: 121	n:10000
KS ci ratio: 5.372743e-02	ci left: 3.379640e-01	ci right 3.567250e-01	k: 3473	n:10000
AP3M2   10000 perm   1 sec   (6668 perm/sec)   p_kst 3.473000e-01   p_cons 1.210000e-02   p_joint 1.710000e-02

Joint ci ratio: 1.458670e-01	ci left: 3.230283e-02	ci right 3.743355e-02	k: 696	n:20000
Cons ci ratio: 2.494107e-01	ci left: 1.067791e-02	ci right 1.376634e-02	k: 243	n:20000
KS ci ratio: 3.803290e-02	ci left: 3.402512e-01	ci right 3.534933e-01	k: 6937	n:20000
AP3M2   20000 perm   3 sec   (5787 perm/sec)   p_kst 3.468500e-01   p_cons 1.215000e-02   p_joint 3.480000e-02

Joint ci ratio: 1.857145e-01	ci left: 1.327321e-02	ci right 1.602196e-02	k: 438	n:30000
Cons ci ratio: 2.039269e-01	ci left: 1.092521e-02	ci right 1.343725e-02	k: 364	n:30000
KS ci ratio: 3.078153e-02	ci left: 3.454643e-01	ci right 3.562980e-01	k: 10526	n:30000
AP3M2   30000 perm   6 sec   (5433 perm/sec)   p_kst 3.508667e-01   p_cons 1.213333e-02   p_joint 1.460000e-02

Joint ci ratio: 1.590960e-01	ci left: 1.375956e-02	ci right 1.616161e-02	k: 597	n:40000
Cons ci ratio: 1.749164e-01	ci left: 1.131462e-02	ci right 1.350702e-02	k: 495	n:40000
KS ci ratio: 2.658896e-02	ci left: 3.473679e-01	ci right 3.567536e-01	k: 14082	n:40000
AP3M2   40000 perm   8 sec   (5120 perm/sec)   p_kst 3.520500e-01   p_cons 1.237500e-02   p_joint 1.492500e-02

Joint ci ratio: 1.570930e-01	ci left: 1.133306e-02	ci right 1.328418e-02	k: 614	n:50000
Cons ci ratio: 1.570930e-01	ci left: 1.133306e-02	ci right 1.328418e-02	k: 614	n:50000
KS ci ratio: 2.372232e-02	ci left: 3.490092e-01	ci right 3.574079e-01	k: 17660	n:50000
AP3M2   50000 perm   10 sec   (4952 perm/sec)   p_kst 3.532000e-01   p_cons 1.228000e-02   p_joint 1.228000e-02

Joint ci ratio: 1.425285e-01	ci left: 1.156200e-02	ci right 1.335229e-02	k: 746	n:60000
Cons ci ratio: 1.425285e-01	ci left: 1.156200e-02	ci right 1.335229e-02	k: 746	n:60000
KS ci ratio: 2.166900e-02	ci left: 3.490918e-01	ci right 3.567558e-01	k: 21175	n:60000
AP3M2   60000 perm   12 sec   (4834 perm/sec)   p_kst 3.529167e-01   p_cons 1.243333e-02   p_joint 1.243333e-02

Joint ci ratio: 1.309328e-01	ci left: 1.181447e-02	ci right 1.348344e-02	k: 884	n:70000
Cons ci ratio: 1.309328e-01	ci left: 1.181447e-02	ci right 1.348344e-02	k: 884	n:70000
KS ci ratio: 2.004300e-02	ci left: 3.498008e-01	ci right 3.568971e-01	k: 24734	n:70000
AP3M2   70000 perm   15 sec   (4726 perm/sec)   p_kst 3.533429e-01   p_cons 1.262857e-02   p_joint 1.262857e-02

Joint ci ratio: 1.231210e-01	ci left: 1.174158e-02	ci right 1.329407e-02	k: 1000	n:80000
Cons ci ratio: 1.231210e-01	ci left: 1.174158e-02	ci right 1.329407e-02	k: 1000	n:80000
KS ci ratio: 1.875085e-02	ci left: 3.499744e-01	ci right 3.566113e-01	k: 28263	n:80000
AP3M2   80000 perm   17 sec   (4609 perm/sec)   p_kst 3.532875e-01   p_cons 1.250000e-02   p_joint 1.250000e-02

Joint ci ratio: 1.165588e-01	ci left: 1.168721e-02	ci right 1.314447e-02	k: 1116	n:90000
Cons ci ratio: 1.165588e-01	ci left: 1.168721e-02	ci right 1.314447e-02	k: 1116	n:90000
KS ci ratio: 1.765828e-02	ci left: 3.506864e-01	ci right 3.569452e-01	k: 31843	n:90000
AP3M2   90000 perm   20 sec   (4524 perm/sec)   p_kst 3.538111e-01   p_cons 1.240000e-02   p_joint 1.240000e-02

Joint ci ratio: 1.115420e-01	ci left: 1.151906e-02	ci right 1.288946e-02	k: 1219	n:100000
Cons ci ratio: 1.115420e-01	ci left: 1.151906e-02	ci right 1.288946e-02	k: 1219	n:100000
KS ci ratio: 1.673939e-02	ci left: 3.511950e-01	ci right 3.571334e-01	k: 35416	n:100000
AP3M2   100000 perm   23 sec   (4440 perm/sec)   p_kst 3.541600e-01   p_cons 1.219000e-02   p_joint 1.219000e-02

Joint ci ratio: 1.065523e-01	ci left: 1.150650e-02	ci right 1.281032e-02	k: 1336	n:110000
Cons ci ratio: 1.065523e-01	ci left: 1.150650e-02	ci right 1.281032e-02	k: 1336	n:110000
KS ci ratio: 1.598887e-02	ci left: 3.505200e-01	ci right 3.561786e-01	k: 38868	n:110000
AP3M2   110000 perm   25 sec   (4363 perm/sec)   p_kst 3.533455e-01   p_cons 1.214545e-02   p_joint 1.214545e-02

Joint ci ratio: 1.017532e-01	ci left: 1.159465e-02	ci right 1.284575e-02	k: 1465	n:120000
Cons ci ratio: 1.017532e-01	ci left: 1.159465e-02	ci right 1.284575e-02	k: 1465	n:120000
KS ci ratio: 1.531391e-02	ci left: 3.504702e-01	ci right 3.558869e-01	k: 42381	n:120000
AP3M2   120000 perm   28 sec   (4276 perm/sec)   p_kst 3.531750e-01   p_cons 1.220833e-02   p_joint 1.220833e-02

Joint ci ratio: 9.745638e-02	ci left: 1.169288e-02	ci right 1.289825e-02	k: 1597	n:130000
Cons ci ratio: 9.745638e-02	ci left: 1.169288e-02	ci right 1.289825e-02	k: 1597	n:130000
KS ci ratio: 1.469848e-02	ci left: 3.510313e-01	ci right 3.562368e-01	k: 45972	n:130000
AP3M2   130000 perm   31 sec   (4200 perm/sec)   p_kst 3.536308e-01   p_cons 1.228462e-02   p_joint 1.228462e-02

Outputting figure to mutsig2_images.part000000000009/AP3M2.2_1289_130000_0.35363_0.012285_0.012285.png
                gene_name: AP3M2
               theta_stop: 0.097 
                    nperm: 130000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.012 
      ci_cons_bounds_left: 0.012 
     ci_cons_bounds_right: 0.013 
                  p_joint: 0.012 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.013 

Current progress: 61 percent done.
AP4M1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.159900e-03	ci left: 9.641510e-01	ci right 9.711731e-01	k: 9678	n:10000
Cons ci ratio: 6.314093e-02	ci left: 2.693338e-01	ci right 2.869956e-01	k: 2781	n:10000
KS ci ratio: 7.200770e-02	ci left: 2.203008e-01	ci right 2.368576e-01	k: 2285	n:10000
AP4M1   10000 perm   2 sec   (6250 perm/sec)   p_kst 2.285000e-01   p_cons 2.781000e-01   p_joint 9.678000e-01

Outputting figure to mutsig2_images.part000000000009/AP4M1.2_1422_10000_0.2285_0.2781_0.9678.png
                gene_name: AP4M1
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 63 percent done.
APC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.045098e-02	ci left: 2.280016e-01	ci right 2.447522e-01	k: 2363	n:10000
Cons ci ratio: 1.557042e-01	ci left: 5.494237e-02	ci right 6.431621e-02	k: 595	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
APC2   10000 perm   3 sec   (3852 perm/sec)   p_kst 1   p_cons 5.950000e-02   p_joint 2.363000e-01

Joint ci ratio: 5.335952e-02	ci left: 2.067982e-01	ci right 2.181855e-01	k: 4249	n:20000
Cons ci ratio: 1.026566e-01	ci left: 6.445142e-02	ci right 7.147482e-02	k: 1358	n:20000
KS ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
APC2   20000 perm   6 sec   (3386 perm/sec)   p_kst 1   p_cons 6.790000e-02   p_joint 2.124500e-01

Joint ci ratio: 5.550997e-02	ci left: 1.385625e-01	ci right 1.465069e-01	k: 4275	n:30000
Cons ci ratio: 8.363240e-02	ci left: 6.537265e-02	ci right 7.111131e-02	k: 2046	n:30000
KS ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
APC2   30000 perm   9 sec   (3261 perm/sec)   p_kst 1   p_cons 6.820000e-02   p_joint 1.425000e-01

Outputting figure to mutsig2_images.part000000000009/APC2.2_6968_30000_1_0.0682_0.1425.png
                gene_name: APC2
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.068 
      ci_cons_bounds_left: 0.065 
     ci_cons_bounds_right: 0.071 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 66 percent done.
APCDD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.369301e-02	ci left: 8.850350e-01	ci right 8.973360e-01	k: 8913	n:10000
Cons ci ratio: 9.697687e-03	ci left: 9.376532e-01	ci right 9.468871e-01	k: 9424	n:10000
KS ci ratio: 1.799302e-02	ci left: 8.184250e-01	ci right 8.333847e-01	k: 8260	n:10000
APCDD1   10000 perm   2 sec   (6318 perm/sec)   p_kst 8.260000e-01   p_cons 9.424000e-01   p_joint 8.913000e-01

Outputting figure to mutsig2_images.part000000000009/APCDD1.2_1565_10000_0.826_0.9424_0.8913.png
                gene_name: APCDD1
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 68 percent done.
APCDD1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.657053e-01	ci left: 1.846678e-02	ci right 2.421679e-02	k: 212	n:10000
Cons ci ratio: 2.157537e-02	ci left: 7.590934e-01	ci right 7.757506e-01	k: 7675	n:10000
KS ci ratio: 4.337666e-01	ci left: 6.348452e-03	ci right 9.946939e-03	k: 80	n:10000
APCDD1L   10000 perm   2 sec   (6067 perm/sec)   p_kst 8.000000e-03   p_cons 7.675000e-01   p_joint 2.120000e-02

Joint ci ratio: 1.380522e-01	ci left: 3.606913e-02	ci right 4.146602e-02	k: 774	n:20000
Cons ci ratio: 1.535010e-02	ci left: 7.593631e-01	ci right 7.711597e-01	k: 15306	n:20000
KS ci ratio: 3.057768e-01	ci left: 6.904673e-03	ci right 9.441445e-03	k: 162	n:20000
APCDD1L   20000 perm   4 sec   (5196 perm/sec)   p_kst 8.100000e-03   p_cons 7.653000e-01   p_joint 3.870000e-02

Joint ci ratio: 1.084930e-01	ci left: 3.943328e-02	ci right 4.398935e-02	k: 1250	n:30000
Cons ci ratio: 1.245887e-02	ci left: 7.626103e-01	ci right 7.722045e-01	k: 23023	n:30000
KS ci ratio: 2.411146e-01	ci left: 7.680255e-03	ci right 9.816515e-03	k: 261	n:30000
APCDD1L   30000 perm   6 sec   (4959 perm/sec)   p_kst 8.700000e-03   p_cons 7.674333e-01   p_joint 4.166667e-02

Joint ci ratio: 1.036854e-01	ci left: 3.270842e-02	ci right 3.630956e-02	k: 1379	n:40000
Cons ci ratio: 1.082471e-02	ci left: 7.620960e-01	ci right 7.704153e-01	k: 30651	n:40000
KS ci ratio: 2.080128e-01	ci left: 7.884339e-03	ci right 9.738027e-03	k: 351	n:40000
APCDD1L   40000 perm   8 sec   (4772 perm/sec)   p_kst 8.775000e-03   p_cons 7.662750e-01   p_joint 3.447500e-02

Joint ci ratio: 9.169825e-02	ci left: 3.364085e-02	ci right 3.689340e-02	k: 1762	n:50000
Cons ci ratio: 9.685562e-03	ci left: 7.624044e-01	ci right 7.698446e-01	k: 38307	n:50000
KS ci ratio: 1.841619e-01	ci left: 8.152640e-03	ci right 9.825115e-03	k: 448	n:50000
APCDD1L   50000 perm   11 sec   (4644 perm/sec)   p_kst 8.960000e-03   p_cons 7.661400e-01   p_joint 3.524000e-02

Joint ci ratio: 7.110132e-02	ci left: 4.649972e-02	ci right 4.994415e-02	k: 2892	n:60000
Cons ci ratio: 8.815513e-03	ci left: 7.637972e-01	ci right 7.705769e-01	k: 46032	n:60000
KS ci ratio: 1.657728e-01	ci left: 8.467520e-03	ci right 1.001384e-02	k: 553	n:60000
APCDD1L   60000 perm   13 sec   (4529 perm/sec)   p_kst 9.216667e-03   p_cons 7.672000e-01   p_joint 4.820000e-02

Joint ci ratio: 8.065541e-02	ci left: 3.132471e-02	ci right 3.397136e-02	k: 2284	n:70000
Cons ci ratio: 8.180508e-03	ci left: 7.632187e-01	ci right 7.695021e-01	k: 53646	n:70000
KS ci ratio: 1.525653e-01	ci left: 8.629675e-03	ci right 1.006858e-02	k: 653	n:70000
APCDD1L   70000 perm   16 sec   (4448 perm/sec)   p_kst 9.328571e-03   p_cons 7.663714e-01   p_joint 3.262857e-02

Joint ci ratio: 7.957925e-02	ci left: 2.826479e-02	ci right 3.061950e-02	k: 2354	n:80000
Cons ci ratio: 7.631520e-03	ci left: 7.643937e-01	ci right 7.702619e-01	k: 61387	n:80000
KS ci ratio: 1.435311e-01	ci left: 8.574114e-03	ci right 9.911839e-03	k: 738	n:80000
APCDD1L   80000 perm   18 sec   (4368 perm/sec)   p_kst 9.225000e-03   p_cons 7.673375e-01   p_joint 2.942500e-02

Joint ci ratio: 7.935072e-02	ci left: 2.535142e-02	ci right 2.745703e-02	k: 2375	n:90000
Cons ci ratio: 7.193359e-03	ci left: 7.646480e-01	ci right 7.701792e-01	k: 69068	n:90000
KS ci ratio: 1.360157e-01	ci left: 8.522127e-03	ci right 9.776483e-03	k: 822	n:90000
APCDD1L   90000 perm   21 sec   (4291 perm/sec)   p_kst 9.133333e-03   p_cons 7.674222e-01   p_joint 2.638889e-02

Joint ci ratio: 6.567551e-02	ci left: 3.326908e-02	ci right 3.553803e-02	k: 3439	n:100000
Cons ci ratio: 6.819100e-03	ci left: 7.650598e-01	ci right 7.703046e-01	k: 76769	n:100000
KS ci ratio: 1.282907e-01	ci left: 8.656250e-03	ci right 9.852475e-03	k: 924	n:100000
APCDD1L   100000 perm   24 sec   (4215 perm/sec)   p_kst 9.240000e-03   p_cons 7.676900e-01   p_joint 3.439000e-02

Joint ci ratio: 6.562442e-02	ci left: 3.038617e-02	ci right 3.245681e-02	k: 3455	n:110000
Cons ci ratio: 6.511351e-03	ci left: 7.646545e-01	ci right 7.696587e-01	k: 84388	n:110000
KS ci ratio: 1.216286e-01	ci left: 8.785266e-03	ci right 9.931735e-03	k: 1028	n:110000
APCDD1L   110000 perm   27 sec   (4140 perm/sec)   p_kst 9.345455e-03   p_cons 7.671636e-01   p_joint 3.140909e-02

Joint ci ratio: 6.643909e-02	ci left: 2.725422e-02	ci right 2.913534e-02	k: 3382	n:120000
Cons ci ratio: 6.236272e-03	ci left: 7.646394e-01	ci right 7.694311e-01	k: 92045	n:120000
KS ci ratio: 1.172730e-01	ci left: 8.683714e-03	ci right 9.773534e-03	k: 1106	n:120000
APCDD1L   120000 perm   29 sec   (4071 perm/sec)   p_kst 9.216667e-03   p_cons 7.670417e-01   p_joint 2.818333e-02

Joint ci ratio: 6.405705e-02	ci left: 2.710234e-02	ci right 2.890342e-02	k: 3639	n:130000
Cons ci ratio: 5.991026e-03	ci left: 7.647694e-01	ci right 7.693725e-01	k: 99720	n:130000
KS ci ratio: 1.131614e-01	ci left: 8.628315e-03	ci right 9.670680e-03	k: 1188	n:130000
APCDD1L   130000 perm   32 sec   (4003 perm/sec)   p_kst 9.138462e-03   p_cons 7.670769e-01   p_joint 2.799231e-02

Joint ci ratio: 6.178371e-02	ci left: 2.708577e-02	ci right 2.881957e-02	k: 3912	n:140000
Cons ci ratio: 5.769493e-03	ci left: 7.650775e-01	ci right 7.695114e-01	k: 107422	n:140000
KS ci ratio: 1.092805e-01	ci left: 8.609200e-03	ci right 9.611289e-03	k: 1274	n:140000
APCDD1L   140000 perm   36 sec   (3935 perm/sec)   p_kst 9.100000e-03   p_cons 7.673000e-01   p_joint 2.794286e-02

Joint ci ratio: 5.948108e-02	ci left: 2.730234e-02	ci right 2.898263e-02	k: 4220	n:150000
Cons ci ratio: 5.578854e-03	ci left: 7.648321e-01	ci right 7.691176e-01	k: 115047	n:150000
KS ci ratio: 1.051129e-01	ci left: 8.703535e-03	ci right 9.675579e-03	k: 1377	n:150000
APCDD1L   150000 perm   39 sec   (3872 perm/sec)   p_kst 9.180000e-03   p_cons 7.669800e-01   p_joint 2.813333e-02

Joint ci ratio: 5.766749e-02	ci left: 2.725871e-02	ci right 2.888345e-02	k: 4490	n:160000
Cons ci ratio: 5.404894e-03	ci left: 7.646887e-01	ci right 7.688391e-01	k: 122683	n:160000
KS ci ratio: 1.020159e-01	ci left: 8.677047e-03	ci right 9.615869e-03	k: 1462	n:160000
APCDD1L   160000 perm   42 sec   (3808 perm/sec)   p_kst 9.137500e-03   p_cons 7.667687e-01   p_joint 2.806250e-02

Joint ci ratio: 5.761114e-02	ci left: 2.574743e-02	ci right 2.728054e-02	k: 4506	n:170000
Cons ci ratio: 5.245733e-03	ci left: 7.645995e-01	ci right 7.686267e-01	k: 130325	n:170000
KS ci ratio: 9.860055e-02	ci left: 8.757334e-03	ci right 9.671285e-03	k: 1565	n:170000
APCDD1L   170000 perm   45 sec   (3743 perm/sec)   p_kst 9.205882e-03   p_cons 7.666176e-01   p_joint 2.650588e-02

Outputting figure to mutsig2_images.part000000000009/APCDD1L.2_1522_170000_0.0092059_0.76662_0.026506.png
                gene_name: APCDD1L
               theta_stop: 0.099 
                    nperm: 170000 
                     p_ks: 0.0092 
        ci_ks_bounds_left: 0.0088 
       ci_ks_bounds_right: 0.0097 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.027 
     ci_joint_bounds_left: 0.026 
    ci_joint_bounds_right: 0.027 

Current progress: 71 percent done.
APEX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.435754e-02	ci left: 2.618113e-01	ci right 2.793225e-01	k: 2705	n:10000
Cons ci ratio: 1.342318e-02	ci left: 8.889287e-01	ci right 9.010401e-01	k: 8951	n:10000
KS ci ratio: 2.256183e-01	ci left: 2.598777e-02	ci right 3.269015e-02	k: 292	n:10000
APEX2   10000 perm   2 sec   (6197 perm/sec)   p_kst 2.920000e-02   p_cons 8.951000e-01   p_joint 2.705000e-01

Joint ci ratio: 4.360382e-02	ci left: 2.814820e-01	ci right 2.940797e-01	k: 5755	n:20000
Cons ci ratio: 9.452411e-03	ci left: 8.915340e-01	ci right 9.000506e-01	k: 17917	n:20000
KS ci ratio: 1.560097e-01	ci left: 2.820837e-02	ci right 3.302937e-02	k: 611	n:20000
APEX2   20000 perm   4 sec   (5438 perm/sec)   p_kst 3.055000e-02   p_cons 8.958500e-01   p_joint 2.877500e-01

Joint ci ratio: 2.634835e-02	ci left: 4.189311e-01	ci right 4.301502e-01	k: 12736	n:30000
Cons ci ratio: 7.680936e-03	ci left: 8.932347e-01	ci right 9.001550e-01	k: 26902	n:30000
KS ci ratio: 1.295079e-01	ci left: 2.771117e-02	ci right 3.158063e-02	k: 888	n:30000
APEX2   30000 perm   6 sec   (5152 perm/sec)   p_kst 2.960000e-02   p_cons 8.967333e-01   p_joint 4.245333e-01

Joint ci ratio: 4.678546e-02	ci left: 1.457958e-01	ci right 1.528052e-01	k: 5971	n:40000
Cons ci ratio: 6.602551e-03	ci left: 8.950939e-01	ci right 9.010481e-01	k: 35924	n:40000
KS ci ratio: 1.113534e-01	ci left: 2.837429e-02	ci right 3.174439e-02	k: 1201	n:40000
APEX2   40000 perm   8 sec   (4902 perm/sec)   p_kst 3.002500e-02   p_cons 8.981000e-01   p_joint 1.492750e-01

Joint ci ratio: 4.639870e-02	ci left: 1.220140e-01	ci right 1.278296e-01	k: 6245	n:50000
Cons ci ratio: 5.922821e-03	ci left: 8.948690e-01	ci right 9.002047e-01	k: 44878	n:50000
KS ci ratio: 9.941030e-02	ci left: 2.865872e-02	ci right 3.167616e-02	k: 1507	n:50000
APEX2   50000 perm   11 sec   (4738 perm/sec)   p_kst 3.014000e-02   p_cons 8.975600e-01   p_joint 1.249000e-01

Outputting figure to mutsig2_images.part000000000009/APEX2.2_1581_50000_0.03014_0.89756_0.1249.png
                gene_name: APEX2
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.030 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 74 percent done.
APLF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.242548e-02	ci left: 2.738884e-01	ci right 2.916384e-01	k: 2827	n:10000
Cons ci ratio: 9.386443e-02	ci left: 1.414855e-01	ci right 1.555199e-01	k: 1484	n:10000
KS ci ratio: 1.084746e-01	ci left: 1.092005e-01	ci right 1.218245e-01	k: 1154	n:10000
APLF   10000 perm   2 sec   (6461 perm/sec)   p_kst 1.154000e-01   p_cons 1.484000e-01   p_joint 2.827000e-01

Joint ci ratio: 3.425092e-02	ci left: 3.889135e-01	ci right 4.025168e-01	k: 7914	n:20000
Cons ci ratio: 6.563526e-02	ci left: 1.463597e-01	ci right 1.563419e-01	k: 3026	n:20000
KS ci ratio: 7.826432e-02	ci left: 1.070713e-01	ci right 1.158420e-01	k: 2228	n:20000
APLF   20000 perm   4 sec   (5616 perm/sec)   p_kst 1.114000e-01   p_cons 1.513000e-01   p_joint 3.957000e-01

Outputting figure to mutsig2_images.part000000000009/APLF.2_1576_20000_0.1114_0.1513_0.3957.png
                gene_name: APLF
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.40 

Current progress: 76 percent done.
APLP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.032889e-02	ci left: 6.159285e-01	ci right 6.349984e-01	k: 6255	n:10000
Cons ci ratio: 5.699905e-02	ci left: 3.118529e-01	ci right 3.302514e-01	k: 3210	n:10000
KS ci ratio: 6.151475e-02	ci left: 2.798308e-01	ci right 2.976924e-01	k: 2887	n:10000
APLP1   10000 perm   2 sec   (5876 perm/sec)   p_kst 2.887000e-01   p_cons 3.210000e-01   p_joint 6.255000e-01

Outputting figure to mutsig2_images.part000000000009/APLP1.2_2024_10000_0.2887_0.321_0.6255.png
                gene_name: APLP1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.63 

Current progress: 79 percent done.
APOA1BP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.714896e-02	ci left: 6.665257e-01	ci right 6.849718e-01	k: 6758	n:10000
Cons ci ratio: 5.095471e-02	ci left: 3.622168e-01	ci right 3.812580e-01	k: 3717	n:10000
KS ci ratio: 5.619830e-02	ci left: 3.180054e-01	ci right 3.364953e-01	k: 3272	n:10000
APOA1BP   10000 perm   2 sec   (6648 perm/sec)   p_kst 3.272000e-01   p_cons 3.717000e-01   p_joint 6.758000e-01

Outputting figure to mutsig2_images.part000000000009/APOA1BP.2_891_10000_0.3272_0.3717_0.6758.png
                gene_name: APOA1BP
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.68 

Current progress: 82 percent done.
APOB48R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.248318e-02	ci left: 3.485962e-01	ci right 3.674866e-01	k: 3580	n:10000
Cons ci ratio: 1.246706e-02	ci left: 9.023712e-01	ci right 9.137898e-01	k: 9082	n:10000
KS ci ratio: 2.676375e-01	ci left: 1.818649e-02	ci right 2.389730e-02	k: 209	n:10000
APOB48R   10000 perm   2 sec   (5224 perm/sec)   p_kst 2.090000e-02   p_cons 9.082000e-01   p_joint 3.580000e-01

Joint ci ratio: 3.110049e-02	ci left: 4.357500e-01	ci right 4.495667e-01	k: 8853	n:20000
Cons ci ratio: 8.272235e-03	ci left: 9.143667e-01	ci right 9.220112e-01	k: 18365	n:20000
KS ci ratio: 1.940254e-01	ci left: 1.805714e-02	ci right 2.198415e-02	k: 399	n:20000
APOB48R   20000 perm   4 sec   (4601 perm/sec)   p_kst 1.995000e-02   p_cons 9.182500e-01   p_joint 4.426500e-01

Joint ci ratio: 2.529919e-02	ci left: 4.388660e-01	ci right 4.501448e-01	k: 13335	n:30000
Cons ci ratio: 6.787463e-03	ci left: 9.143295e-01	ci right 9.205894e-01	k: 27525	n:30000
KS ci ratio: 1.576201e-01	ci left: 1.860592e-02	ci right 2.182127e-02	k: 605	n:30000
APOB48R   30000 perm   7 sec   (4270 perm/sec)   p_kst 2.016667e-02   p_cons 9.175000e-01   p_joint 4.445000e-01

Joint ci ratio: 2.085134e-02	ci left: 4.641744e-01	ci right 4.739801e-01	k: 18763	n:40000
Cons ci ratio: 5.860434e-03	ci left: 9.152176e-01	ci right 9.206216e-01	k: 36718	n:40000
KS ci ratio: 1.353960e-01	ci left: 1.913373e-02	ci right 2.193649e-02	k: 820	n:40000
APOB48R   40000 perm   10 sec   (4112 perm/sec)   p_kst 2.050000e-02   p_cons 9.179500e-01   p_joint 4.690750e-01

Joint ci ratio: 1.838844e-02	ci left: 4.717339e-01	ci right 4.805089e-01	k: 23806	n:50000
Cons ci ratio: 5.240582e-03	ci left: 9.155405e-01	ci right 9.203708e-01	k: 45899	n:50000
KS ci ratio: 1.220311e-01	ci left: 1.898479e-02	ci right 2.147135e-02	k: 1010	n:50000
APOB48R   50000 perm   12 sec   (4011 perm/sec)   p_kst 2.020000e-02   p_cons 9.179800e-01   p_joint 4.761200e-01

Joint ci ratio: 5.767160e-03	ci left: 8.824877e-01	ci right 8.876083e-01	k: 53104	n:60000
Cons ci ratio: 4.791741e-03	ci left: 9.155062e-01	ci right 9.199200e-01	k: 55064	n:60000
KS ci ratio: 1.109424e-01	ci left: 1.925135e-02	ci right 2.152870e-02	k: 1222	n:60000
APOB48R   60000 perm   15 sec   (3942 perm/sec)   p_kst 2.036667e-02   p_cons 9.177333e-01   p_joint 8.850667e-01

Joint ci ratio: 1.421390e-02	ci left: 5.170198e-01	ci right 5.244356e-01	k: 36451	n:70000
Cons ci ratio: 4.443936e-03	ci left: 9.154085e-01	ci right 9.194997e-01	k: 64223	n:70000
KS ci ratio: 1.025600e-01	ci left: 1.939340e-02	ci right 2.150375e-02	k: 1430	n:70000
APOB48R   70000 perm   18 sec   (3881 perm/sec)   p_kst 2.042857e-02   p_cons 9.174714e-01   p_joint 5.207286e-01

Joint ci ratio: 1.390449e-02	ci left: 4.948916e-01	ci right 5.018335e-01	k: 39869	n:80000
Cons ci ratio: 4.154392e-03	ci left: 9.156352e-01	ci right 9.194594e-01	k: 73405	n:80000
KS ci ratio: 9.582945e-02	ci left: 1.950482e-02	ci right 2.148017e-02	k: 1638	n:80000
APOB48R   80000 perm   21 sec   (3822 perm/sec)   p_kst 2.047500e-02   p_cons 9.175625e-01   p_joint 4.983625e-01

Outputting figure to mutsig2_images.part000000000009/APOB48R.2_3287_80000_0.020475_0.91756_0.49836.png
                gene_name: APOB48R
               theta_stop: 0.096 
                    nperm: 80000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.021 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.50 

Current progress: 84 percent done.
APOBEC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.307207e-01	ci left: 7.708281e-02	ci right 8.796184e-02	k: 824	n:10000
Cons ci ratio: 1.991394e-01	ci left: 3.357607e-02	ci right 4.109654e-02	k: 372	n:10000
KS ci ratio: 4.601925e-02	ci left: 4.106995e-01	ci right 4.301469e-01	k: 4204	n:10000
APOBEC2   10000 perm   1 sec   (6779 perm/sec)   p_kst 4.204000e-01   p_cons 3.720000e-02   p_joint 8.240000e-02

Joint ci ratio: 1.259415e-01	ci left: 4.328340e-02	ci right 4.914944e-02	k: 923	n:20000
Cons ci ratio: 1.458670e-01	ci left: 3.230283e-02	ci right 3.743355e-02	k: 696	n:20000
KS ci ratio: 3.271100e-02	ci left: 4.110519e-01	ci right 4.247720e-01	k: 8358	n:20000
APOBEC2   20000 perm   3 sec   (5854 perm/sec)   p_kst 4.179000e-01   p_cons 3.480000e-02   p_joint 4.615000e-02

Joint ci ratio: 1.082674e-01	ci left: 3.959561e-02	ci right 4.416032e-02	k: 1255	n:30000
Cons ci ratio: 1.197851e-01	ci left: 3.239853e-02	ci right 3.655893e-02	k: 1033	n:30000
KS ci ratio: 2.674037e-02	ci left: 4.117448e-01	ci right 4.229378e-01	k: 12520	n:30000
APOBEC2   30000 perm   5 sec   (5502 perm/sec)   p_kst 4.173333e-01   p_cons 3.443333e-02   p_joint 4.183333e-02

Joint ci ratio: 9.497260e-02	ci left: 3.890666e-02	ci right 4.281035e-02	k: 1633	n:40000
Cons ci ratio: 1.041160e-01	ci left: 3.244034e-02	ci right 3.602770e-02	k: 1368	n:40000
KS ci ratio: 2.300098e-02	ci left: 4.158056e-01	ci right 4.255059e-01	k: 16826	n:40000
APOBEC2   40000 perm   8 sec   (5266 perm/sec)   p_kst 4.206500e-01   p_cons 3.420000e-02   p_joint 4.082500e-02

Joint ci ratio: 8.467649e-02	ci left: 3.935701e-02	ci right 4.285652e-02	k: 2054	n:50000
Cons ci ratio: 9.321605e-02	ci left: 3.256543e-02	ci right 3.576895e-02	k: 1707	n:50000
KS ci ratio: 2.064693e-02	ci left: 4.145702e-01	ci right 4.232392e-01	k: 20945	n:50000
APOBEC2   50000 perm   10 sec   (5085 perm/sec)   p_kst 4.189000e-01   p_cons 3.414000e-02   p_joint 4.108000e-02

Outputting figure to mutsig2_images.part000000000009/APOBEC2.2_683_50000_0.4189_0.03414_0.04108.png
                gene_name: APOBEC2
               theta_stop: 0.093 
                    nperm: 50000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.034 
      ci_cons_bounds_left: 0.033 
     ci_cons_bounds_right: 0.036 
                  p_joint: 0.041 
     ci_joint_bounds_left: 0.039 
    ci_joint_bounds_right: 0.043 

Current progress: 87 percent done.
APOC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.079421e-02	ci left: 4.701650e-01	ci right 4.898466e-01	k: 4800	n:10000
KS ci ratio: 8.083070e-02	ci left: 1.826474e-01	ci right 1.981334e-01	k: 1903	n:10000
APOC2   10000 perm   1 sec   (7502 perm/sec)   p_kst 1.903000e-01   p_cons 4.800000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000009/APOC2.2_318_10000_0.1903_0.48_1.png
                gene_name: APOC2
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
APOC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.949518e-03	ci left: 9.817751e-01	ci right 9.867370e-01	k: 9844	n:10000
Cons ci ratio: 3.087503e-02	ci left: 6.074897e-01	ci right 6.266420e-01	k: 6171	n:10000
KS ci ratio: 6.236713e-03	ci left: 9.721719e-01	ci right 9.783470e-01	k: 9754	n:10000
APOC3   10000 perm   1 sec   (6744 perm/sec)   p_kst 9.754000e-01   p_cons 6.171000e-01   p_joint 9.844000e-01

Outputting figure to mutsig2_images.part000000000009/APOC3.2_312_10000_0.9754_0.6171_0.9844.png
                gene_name: APOC3
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 92 percent done.
APOH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.105447e-01	ci left: 2.996481e-02	ci right 3.711029e-02	k: 334	n:10000
Cons ci ratio: 2.150889e-02	ci left: 7.602067e-01	ci right 7.768366e-01	k: 7686	n:10000
KS ci ratio: 3.920006e-01	ci left: 7.963073e-03	ci right 1.193024e-02	k: 98	n:10000
APOH   10000 perm   2 sec   (6213 perm/sec)   p_kst 9.800000e-03   p_cons 7.686000e-01   p_joint 3.340000e-02

Joint ci ratio: 2.575473e-01	ci left: 9.975082e-03	ci right 1.296948e-02	k: 228	n:20000
Cons ci ratio: 1.495882e-02	ci left: 7.685930e-01	ci right 7.802271e-01	k: 15489	n:20000
KS ci ratio: 2.845415e-01	ci left: 8.062881e-03	ci right 1.078261e-02	k: 187	n:20000
APOH   20000 perm   4 sec   (5418 perm/sec)   p_kst 9.350000e-03   p_cons 7.744500e-01   p_joint 1.140000e-02

Joint ci ratio: 1.759980e-01	ci left: 1.483366e-02	ci right 1.772779e-02	k: 487	n:30000
Cons ci ratio: 1.220740e-02	ci left: 7.698622e-01	ci right 7.793513e-01	k: 23239	n:30000
KS ci ratio: 2.331652e-01	ci left: 8.244884e-03	ci right 1.045170e-02	k: 279	n:30000
APOH   30000 perm   6 sec   (5102 perm/sec)   p_kst 9.300000e-03   p_cons 7.746333e-01   p_joint 1.623333e-02

Joint ci ratio: 1.449724e-01	ci left: 1.664736e-02	ci right 1.927329e-02	k: 717	n:40000
Cons ci ratio: 1.055173e-02	ci left: 7.711773e-01	ci right 7.793827e-01	k: 31012	n:40000
KS ci ratio: 2.056678e-01	ci left: 8.074059e-03	ci right 9.948263e-03	k: 359	n:40000
APOH   40000 perm   8 sec   (4938 perm/sec)   p_kst 8.975000e-03   p_cons 7.753000e-01   p_joint 1.792500e-02

Joint ci ratio: 1.365276e-01	ci left: 1.511160e-02	ci right 1.734508e-02	k: 810	n:50000
Cons ci ratio: 9.437749e-03	ci left: 7.716156e-01	ci right 7.789524e-01	k: 38765	n:50000
KS ci ratio: 1.821264e-01	ci left: 8.343543e-03	ci right 1.003418e-02	k: 458	n:50000
APOH   50000 perm   10 sec   (4771 perm/sec)   p_kst 9.160000e-03   p_cons 7.753000e-01   p_joint 1.620000e-02

Joint ci ratio: 4.437284e-02	ci left: 1.125402e-01	ci right 1.176638e-01	k: 6905	n:60000
Cons ci ratio: 8.625746e-03	ci left: 7.715198e-01	ci right 7.782202e-01	k: 46493	n:60000
KS ci ratio: 1.659240e-01	ci left: 8.451539e-03	ci right 9.996492e-03	k: 552	n:60000
APOH   60000 perm   13 sec   (4657 perm/sec)   p_kst 9.200000e-03   p_cons 7.748833e-01   p_joint 1.150833e-01

Joint ci ratio: 4.146908e-02	ci left: 1.108476e-01	ci right 1.155559e-01	k: 7923	n:70000
Cons ci ratio: 7.718492e-03	ci left: 7.834885e-01	ci right 7.895735e-01	k: 55058	n:70000
KS ci ratio: 1.535159e-01	ci left: 8.519730e-03	ci right 9.949967e-03	k: 645	n:70000
APOH   70000 perm   15 sec   (4562 perm/sec)   p_kst 9.214286e-03   p_cons 7.865429e-01   p_joint 1.131857e-01

Joint ci ratio: 3.866094e-02	ci left: 1.116692e-01	ci right 1.160839e-01	k: 9109	n:80000
Cons ci ratio: 7.230850e-03	ci left: 7.831791e-01	ci right 7.888751e-01	k: 62883	n:80000
KS ci ratio: 1.450240e-01	ci left: 8.393326e-03	ci right 9.717645e-03	k: 723	n:80000
APOH   80000 perm   18 sec   (4481 perm/sec)   p_kst 9.037500e-03   p_cons 7.860375e-01   p_joint 1.138625e-01

Joint ci ratio: 3.349405e-02	ci left: 1.298721e-01	ci right 1.343072e-01	k: 11887	n:90000
Cons ci ratio: 6.811088e-03	ci left: 7.836518e-01	ci right 7.890186e-01	k: 70771	n:90000
KS ci ratio: 1.368573e-01	ci left: 8.414778e-03	ci right 9.661620e-03	k: 812	n:90000
APOH   90000 perm   20 sec   (4403 perm/sec)   p_kst 9.022222e-03   p_cons 7.863444e-01   p_joint 1.320778e-01

Joint ci ratio: 3.175156e-02	ci left: 1.301561e-01	ci right 1.343653e-01	k: 13225	n:100000
Cons ci ratio: 6.473570e-03	ci left: 7.831636e-01	ci right 7.882598e-01	k: 78572	n:100000
KS ci ratio: 1.299311e-01	ci left: 8.433616e-03	ci right 9.615126e-03	k: 901	n:100000
APOH   100000 perm   23 sec   (4331 perm/sec)   p_kst 9.010000e-03   p_cons 7.857200e-01   p_joint 1.322500e-01

Joint ci ratio: 3.027945e-02	ci left: 1.302126e-01	ci right 1.342250e-01	k: 14543	n:110000
Cons ci ratio: 6.183002e-03	ci left: 7.826971e-01	ci right 7.875606e-01	k: 86365	n:110000
KS ci ratio: 1.235832e-01	ci left: 8.503203e-03	ci right 9.632000e-03	k: 996	n:110000
APOH   110000 perm   26 sec   (4255 perm/sec)   p_kst 9.054545e-03   p_cons 7.851364e-01   p_joint 1.322091e-01

Joint ci ratio: 3.021281e-02	ci left: 1.211632e-01	ci right 1.248883e-01	k: 14762	n:120000
Cons ci ratio: 5.906080e-03	ci left: 7.835848e-01	ci right 7.882347e-01	k: 94310	n:120000
KS ci ratio: 1.178112e-01	ci left: 8.602810e-03	ci right 9.687777e-03	k: 1096	n:120000
APOH   120000 perm   29 sec   (4175 perm/sec)   p_kst 9.133333e-03   p_cons 7.859167e-01   p_joint 1.230167e-01

Joint ci ratio: 2.907133e-02	ci left: 1.209134e-01	ci right 1.244880e-01	k: 15950	n:130000
Cons ci ratio: 5.681014e-03	ci left: 7.832816e-01	ci right 7.877518e-01	k: 102118	n:130000
KS ci ratio: 1.135961e-01	ci left: 8.561031e-03	ci right 9.599506e-03	k: 1179	n:130000
APOH   130000 perm   32 sec   (4103 perm/sec)   p_kst 9.069231e-03   p_cons 7.855231e-01   p_joint 1.226923e-01

Joint ci ratio: 2.435734e-02	ci left: 1.542166e-01	ci right 1.580263e-01	k: 21856	n:140000
Cons ci ratio: 5.471835e-03	ci left: 7.835196e-01	ci right 7.878257e-01	k: 109995	n:140000
KS ci ratio: 1.095845e-01	ci left: 8.560557e-03	ci right 9.559935e-03	k: 1267	n:140000
APOH   140000 perm   35 sec   (4032 perm/sec)   p_kst 9.050000e-03   p_cons 7.856786e-01   p_joint 1.561143e-01

Joint ci ratio: 2.239493e-02	ci left: 1.677106e-01	ci right 1.715156e-01	k: 25441	n:150000
Cons ci ratio: 5.288260e-03	ci left: 7.834674e-01	ci right 7.876282e-01	k: 117833	n:150000
KS ci ratio: 1.059700e-01	ci left: 8.560707e-03	ci right 9.525081e-03	k: 1355	n:150000
APOH   150000 perm   38 sec   (3965 perm/sec)   p_kst 9.033333e-03   p_cons 7.855533e-01   p_joint 1.696067e-01

Joint ci ratio: 2.197857e-02	ci left: 1.640180e-01	ci right 1.676691e-01	k: 26534	n:160000
Cons ci ratio: 5.123520e-03	ci left: 7.833236e-01	ci right 7.873535e-01	k: 125655	n:160000
KS ci ratio: 1.029431e-01	ci left: 8.518677e-03	ci right 9.449246e-03	k: 1436	n:160000
APOH   160000 perm   41 sec   (3899 perm/sec)   p_kst 8.975000e-03   p_cons 7.853438e-01   p_joint 1.658375e-01

Joint ci ratio: 2.183577e-02	ci left: 1.576218e-01	ci right 1.611074e-01	k: 27091	n:170000
Cons ci ratio: 4.971190e-03	ci left: 7.833403e-01	ci right 7.872500e-01	k: 133501	n:170000
KS ci ratio: 9.996245e-02	ci left: 8.516357e-03	ci right 9.418155e-03	k: 1523	n:170000
APOH   170000 perm   44 sec   (3833 perm/sec)   p_kst 8.958824e-03   p_cons 7.853000e-01   p_joint 1.593588e-01

Outputting figure to mutsig2_images.part000000000009/APOH.2_1070_170000_0.0089588_0.7853_0.15936.png
                gene_name: APOH
               theta_stop: 0.100 
                    nperm: 170000 
                     p_ks: 0.0090 
        ci_ks_bounds_left: 0.0085 
       ci_ks_bounds_right: 0.0094 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.16 

Current progress: 95 percent done.
AQP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.247189e-02	ci left: 5.832952e-01	ci right 6.026506e-01	k: 5930	n:10000
Cons ci ratio: 5.106395e-02	ci left: 3.612223e-01	ci right 3.802530e-01	k: 3707	n:10000
KS ci ratio: 3.728142e-02	ci left: 5.151564e-01	ci right 5.348291e-01	k: 5250	n:10000
AQP1   10000 perm   2 sec   (6192 perm/sec)   p_kst 5.250000e-01   p_cons 3.707000e-01   p_joint 5.930000e-01

Outputting figure to mutsig2_images.part000000000009/AQP1.2_1083_10000_0.525_0.3707_0.593.png
                gene_name: AQP1
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 97 percent done.
AQP10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.571106e-01	ci left: 5.397934e-02	ci right 6.327985e-02	k: 585	n:10000
Cons ci ratio: 2.008231e-01	ci left: 3.300513e-02	ci right 4.046787e-02	k: 366	n:10000
KS ci ratio: 2.729774e-02	ci left: 6.641089e-01	ci right 6.825900e-01	k: 6734	n:10000
AQP10   10000 perm   2 sec   (6354 perm/sec)   p_kst 6.734000e-01   p_cons 3.660000e-02   p_joint 5.850000e-02

Joint ci ratio: 1.588432e-01	ci left: 2.719860e-02	ci right 3.193948e-02	k: 590	n:20000
Cons ci ratio: 1.477441e-01	ci left: 3.148306e-02	ci right 3.655359e-02	k: 679	n:20000
KS ci ratio: 1.946567e-02	ci left: 6.631325e-01	ci right 6.762181e-01	k: 13394	n:20000
AQP10   20000 perm   4 sec   (5451 perm/sec)   p_kst 6.697000e-01   p_cons 3.395000e-02   p_joint 2.950000e-02

Joint ci ratio: 1.302649e-01	ci left: 2.738837e-02	ci right 3.123684e-02	k: 878	n:30000
Cons ci ratio: 1.204502e-01	ci left: 3.204252e-02	ci right 3.618168e-02	k: 1022	n:30000
KS ci ratio: 1.598733e-02	ci left: 6.617347e-01	ci right 6.724329e-01	k: 20013	n:30000
AQP10   30000 perm   6 sec   (5190 perm/sec)   p_kst 6.671000e-01   p_cons 3.406667e-02   p_joint 2.926667e-02

Joint ci ratio: 1.144843e-01	ci left: 2.684254e-02	ci right 3.012639e-02	k: 1138	n:40000
Cons ci ratio: 1.042343e-01	ci left: 3.236723e-02	ci right 3.595082e-02	k: 1365	n:40000
KS ci ratio: 1.380502e-02	ci left: 6.637618e-01	ci right 6.730138e-01	k: 26736	n:40000
AQP10   40000 perm   8 sec   (5027 perm/sec)   p_kst 6.684000e-01   p_cons 3.412500e-02   p_joint 2.845000e-02

Joint ci ratio: 1.062944e-01	ci left: 2.507074e-02	ci right 2.790460e-02	k: 1323	n:50000
Cons ci ratio: 9.307509e-02	ci left: 3.266317e-02	ci right 3.587119e-02	k: 1712	n:50000
KS ci ratio: 1.231534e-02	ci left: 6.654173e-01	ci right 6.736830e-01	k: 33478	n:50000
AQP10   50000 perm   10 sec   (4857 perm/sec)   p_kst 6.695600e-01   p_cons 3.424000e-02   p_joint 2.646000e-02

Joint ci ratio: 9.637476e-02	ci left: 2.553864e-02	ci right 2.814074e-02	k: 1609	n:60000
Cons ci ratio: 8.527977e-02	ci left: 3.256413e-02	ci right 3.548117e-02	k: 2040	n:60000
KS ci ratio: 1.122905e-02	ci left: 6.663047e-01	ci right 6.738455e-01	k: 40205	n:60000
AQP10   60000 perm   13 sec   (4761 perm/sec)   p_kst 6.700833e-01   p_cons 3.400000e-02   p_joint 2.681667e-02

Outputting figure to mutsig2_images.part000000000009/AQP10.2_930_60000_0.67008_0.034_0.026817.png
                gene_name: AQP10
               theta_stop: 0.096 
                    nperm: 60000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.034 
      ci_cons_bounds_left: 0.033 
     ci_cons_bounds_right: 0.035 
                  p_joint: 0.027 
     ci_joint_bounds_left: 0.026 
    ci_joint_bounds_right: 0.028 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000009
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 9 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1702>
Subject: Job 8003827: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1702>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000010> was used as the working directory.
Started at Sun Nov 11 15:03:26 2012
Results reported at Sun Nov 11 15:16:35 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000010.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000010.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 10  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000010.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    855.37 sec.
    Max Memory :      4829 MB
    Max Swap   :      7198 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
10
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 10
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 10: processing genes 815 - 905
Calculating significance of each gene.
Using projection method.
815	AQP12A	2.314320e-02
816	AQP12B	2.495567e-01
817	AQP2	4.141108e-01
818	AQP3	1
819	AQP4	4.499036e-01
820	AQP5	3.768030e-01
821	AQP6	6.010727e-01
822	AQP7	5.597606e-01
823	AQP8	4.091429e-01
824	AQP9	1
825	AQPEP	3.978267e-01
826	AQR	9.849049e-01
827	AR	3.605911e-01
828	ARAF	4.015291e-01
829	ARAP1	9.573125e-01
830	ARAP2	9.960437e-01
831	ARAP3	8.971564e-01
832	ARC	4.429438e-01
833	ARCN1	1
834	AREG	4.201521e-02
835	ARF1	1
836	ARF3	1
837	ARF4	1
838	ARF5	1.571031e-01
839	ARF6	1
840	ARFGAP1	7.310377e-01
841	ARFGAP2	3.672183e-01
842	ARFGAP3	1
843	ARFGEF1	7.368630e-01
844	ARFGEF2	9.879976e-01
845	ARFIP1	1
846	ARFIP2	7.997782e-01
847	ARFRP1	4.348922e-01
848	ARG1	2.842735e-01
849	ARG2	1
850	ARGFX	1
851	ARGLU1	2.664113e-01
852	ARHGAP1	6.912916e-01
853	ARHGAP10	4.806025e-01
854	ARHGAP11A	3.449492e-01
855	ARHGAP11B	5.788869e-01
856	ARHGAP12	3.773822e-01
857	ARHGAP15	1
858	ARHGAP17	5.635437e-01
859	ARHGAP18	4.038678e-01
860	ARHGAP19	6.626219e-01
861	ARHGAP20	1
862	ARHGAP21	9.683550e-01
863	ARHGAP22	2.134628e-01
864	ARHGAP24	1
865	ARHGAP25	2.038113e-01
866	ARHGAP26	1
867	ARHGAP27	1
868	ARHGAP28	2.880580e-01
869	ARHGAP29	5.714215e-01
870	ARHGAP30	9.903227e-01
871	ARHGAP31	1
872	ARHGAP32	9.047650e-01
873	ARHGAP33	8.675765e-01
874	ARHGAP36	5.591679e-01
875	ARHGAP39	5.683710e-01
876	ARHGAP4	8.875480e-01
877	ARHGAP5	9.843944e-01
878	ARHGAP6	1.691493e-01
879	ARHGAP8	1
880	ARHGAP9	9.131374e-01
881	ARHGDIA	1
882	ARHGDIB	1.813065e-01
883	ARHGDIG	1
884	ARHGEF1	8.744785e-01
885	ARHGEF10	7.860434e-01
886	ARHGEF10L	8.066214e-01
887	ARHGEF11	8.332790e-01
888	ARHGEF12	8.226756e-01
889	ARHGEF15	7.551523e-01
890	ARHGEF16	1
891	ARHGEF17	9.977992e-01
892	ARHGEF18	1
893	ARHGEF19	1
894	ARHGEF2	1.093375e-01
895	ARHGEF3	1
896	ARHGEF35	1
897	ARHGEF37	9.161079e-01
898	ARHGEF38	1
899	ARHGEF4	4.431734e-01
900	ARHGEF5	8.818497e-01
901	ARHGEF6	7.463194e-01
902	ARHGEF7	5.769320e-01
903	ARHGEF9	5.886047e-01
904	ARID1A	6.610335e-01
905	ARID1B	9.940168e-01
Done

Running MutSig 2:
Scatter job 10: processing genes 815 - 905
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ARID1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.156183e-02	ci left: 4.608768e-01	ci right 4.805403e-01	k: 4707	n:10000
Cons ci ratio: 2.094004e-02	ci left: 7.697242e-01	ci right 7.861136e-01	k: 7780	n:10000
KS ci ratio: 5.540393e-02	ci left: 3.242591e-01	ci right 3.428380e-01	k: 3335	n:10000
ARID1A   10000 perm   3 sec   (3714 perm/sec)   p_kst 3.335000e-01   p_cons 7.780000e-01   p_joint 4.707000e-01

Outputting figure to mutsig2_images.part000000000010/ARID1A.13_6938_10000_0.3335_0.778_0.4707.png
                gene_name: ARID1A
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 2 percent done.
ARID1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.022198e-01	ci left: 1.216088e-01	ci right 1.348087e-01	k: 1281	n:10000
Cons ci ratio: 3.187670e-02	ci left: 5.922273e-01	ci right 6.115133e-01	k: 6019	n:10000
KS ci ratio: 1.927855e-01	ci left: 3.586235e-02	ci right 4.360871e-02	k: 396	n:10000
ARID1B   10000 perm   2 sec   (4141 perm/sec)   p_kst 3.960000e-02   p_cons 6.019000e-01   p_joint 1.281000e-01

Joint ci ratio: 9.348920e-02	ci left: 7.701023e-02	ci right 8.461216e-02	k: 1615	n:20000
Cons ci ratio: 2.269460e-02	ci left: 5.918178e-01	ci right 6.054536e-01	k: 11973	n:20000
KS ci ratio: 1.363231e-01	ci left: 3.698772e-02	ci right 4.244714e-02	k: 793	n:20000
ARID1B   20000 perm   5 sec   (3715 perm/sec)   p_kst 3.965000e-02   p_cons 5.986500e-01   p_joint 8.075000e-02

Joint ci ratio: 8.281044e-02	ci left: 6.661478e-02	ci right 7.240226e-02	k: 2084	n:30000
Cons ci ratio: 1.863791e-02	ci left: 5.902880e-01	ci right 6.014268e-01	k: 17876	n:30000
KS ci ratio: 1.137677e-01	ci left: 3.589704e-02	ci right 4.025967e-02	k: 1141	n:30000
ARID1B   30000 perm   8 sec   (3532 perm/sec)   p_kst 3.803333e-02   p_cons 5.958667e-01   p_joint 6.946667e-02

Joint ci ratio: 6.596331e-02	ci left: 7.844274e-02	ci right 8.381826e-02	k: 3244	n:40000
Cons ci ratio: 1.607049e-02	ci left: 5.931506e-01	ci right 6.027852e-01	k: 23919	n:40000
KS ci ratio: 9.801416e-02	ci left: 3.656235e-02	ci right 4.035503e-02	k: 1537	n:40000
ARID1B   40000 perm   11 sec   (3510 perm/sec)   p_kst 3.842500e-02   p_cons 5.979750e-01   p_joint 8.110000e-02

Outputting figure to mutsig2_images.part000000000010/ARID1B.9_6830_40000_0.038425_0.59798_0.0811.png
                gene_name: ARID1B
               theta_stop: 0.098 
                    nperm: 40000 
                     p_ks: 0.038 
        ci_ks_bounds_left: 0.037 
       ci_ks_bounds_right: 0.040 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.081 
     ci_joint_bounds_left: 0.078 
    ci_joint_bounds_right: 0.084 

Current progress: 3 percent done.
ARHGAP36
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.956251e-01	ci left: 3.481398e-02	ci right 4.245779e-02	k: 385	n:10000
Cons ci ratio: 3.045107e-01	ci left: 1.381734e-02	ci right 1.887010e-02	k: 162	n:10000
KS ci ratio: 1.511704e-01	ci left: 5.821938e-02	ci right 6.783712e-02	k: 629	n:10000
ARHGAP36   10000 perm   2 sec   (5627 perm/sec)   p_kst 6.290000e-02   p_cons 1.620000e-02   p_joint 3.850000e-02

Joint ci ratio: 2.257608e-01	ci left: 1.317232e-02	ci right 1.657086e-02	k: 296	n:20000
Cons ci ratio: 2.201831e-01	ci left: 1.388097e-02	ci right 1.736192e-02	k: 311	n:20000
KS ci ratio: 1.095653e-01	ci left: 5.684523e-02	ci right 6.348336e-02	k: 1202	n:20000
ARHGAP36   20000 perm   4 sec   (5080 perm/sec)   p_kst 6.010000e-02   p_cons 1.555000e-02   p_joint 1.480000e-02

Joint ci ratio: 1.479429e-01	ci left: 2.117272e-02	ci right 2.458721e-02	k: 685	n:30000
Cons ci ratio: 1.724403e-01	ci left: 1.547168e-02	ci right 1.842294e-02	k: 507	n:30000
KS ci ratio: 8.979171e-02	ci left: 5.704500e-02	ci right 6.244065e-02	k: 1791	n:30000
ARHGAP36   30000 perm   6 sec   (4874 perm/sec)   p_kst 5.970000e-02   p_cons 1.690000e-02   p_joint 2.283333e-02

Joint ci ratio: 1.110205e-01	ci left: 2.854456e-02	ci right 3.192409e-02	k: 1208	n:40000
Cons ci ratio: 1.492636e-01	ci left: 1.568358e-02	ci right 1.823724e-02	k: 677	n:40000
KS ci ratio: 7.761260e-02	ci left: 5.761854e-02	ci right 6.229559e-02	k: 2397	n:40000
ARHGAP36   40000 perm   8 sec   (4739 perm/sec)   p_kst 5.992500e-02   p_cons 1.692500e-02   p_joint 3.020000e-02

Joint ci ratio: 1.087227e-01	ci left: 2.396064e-02	ci right 2.673484e-02	k: 1266	n:50000
Cons ci ratio: 1.278307e-01	ci left: 1.727878e-02	ci right 1.965759e-02	k: 922	n:50000
KS ci ratio: 6.924099e-02	ci left: 5.815038e-02	ci right 6.234085e-02	k: 3011	n:50000
ARHGAP36   50000 perm   11 sec   (4632 perm/sec)   p_kst 6.022000e-02   p_cons 1.844000e-02   p_joint 2.532000e-02

Joint ci ratio: 1.241276e-01	ci left: 1.533422e-02	ci right 1.737961e-02	k: 980	n:60000
Cons ci ratio: 1.221796e-01	ci left: 1.583522e-02	ci right 1.791189e-02	k: 1011	n:60000
KS ci ratio: 6.302654e-02	ci left: 5.865457e-02	ci right 6.248807e-02	k: 3633	n:60000
ARHGAP36   60000 perm   13 sec   (4539 perm/sec)   p_kst 6.055000e-02   p_cons 1.685000e-02   p_joint 1.633333e-02

Joint ci ratio: 1.097898e-01	ci left: 1.690287e-02	ci right 1.888024e-02	k: 1251	n:70000
Cons ci ratio: 1.079179e-01	ci left: 1.750072e-02	ci right 1.951091e-02	k: 1294	n:70000
KS ci ratio: 5.666075e-02	ci left: 6.218374e-02	ci right 6.582393e-02	k: 4479	n:70000
ARHGAP36   70000 perm   16 sec   (4452 perm/sec)   p_kst 6.398571e-02   p_cons 1.848571e-02   p_joint 1.787143e-02

Joint ci ratio: 9.161005e-02	ci left: 2.134900e-02	ci right 2.341084e-02	k: 1789	n:80000
Cons ci ratio: 1.106806e-01	ci left: 1.458239e-02	ci right 1.630301e-02	k: 1234	n:80000
KS ci ratio: 5.292956e-02	ci left: 6.246171e-02	ci right 6.586998e-02	k: 5132	n:80000
ARHGAP36   80000 perm   18 sec   (4350 perm/sec)   p_kst 6.415000e-02   p_cons 1.542500e-02   p_joint 2.236250e-02

Joint ci ratio: 8.803411e-02	ci left: 2.060577e-02	ci right 2.251413e-02	k: 1939	n:90000
Cons ci ratio: 1.037598e-01	ci left: 1.480048e-02	ci right 1.643096e-02	k: 1404	n:90000
KS ci ratio: 5.010504e-02	ci left: 6.208006e-02	ci right 6.528147e-02	k: 5730	n:90000
ARHGAP36   90000 perm   21 sec   (4230 perm/sec)   p_kst 6.366667e-02   p_cons 1.560000e-02   p_joint 2.154444e-02

Joint ci ratio: 1.018389e-01	ci left: 1.385594e-02	ci right 1.535241e-02	k: 1459	n:100000
Cons ci ratio: 8.921580e-02	ci left: 1.809433e-02	ci right 1.979373e-02	k: 1893	n:100000
KS ci ratio: 4.743359e-02	ci left: 6.241158e-02	ci right 6.545377e-02	k: 6392	n:100000
ARHGAP36   100000 perm   24 sec   (4162 perm/sec)   p_kst 6.392000e-02   p_cons 1.893000e-02   p_joint 1.459000e-02

Joint ci ratio: 9.847773e-02	ci left: 1.350023e-02	ci right 1.490737e-02	k: 1561	n:110000
Cons ci ratio: 8.472058e-02	ci left: 1.828147e-02	ci right 1.990766e-02	k: 2099	n:110000
KS ci ratio: 4.518603e-02	ci left: 6.258758e-02	ci right 6.549001e-02	k: 7043	n:110000
ARHGAP36   110000 perm   27 sec   (4098 perm/sec)   p_kst 6.402727e-02   p_cons 1.908182e-02   p_joint 1.419091e-02

Outputting figure to mutsig2_images.part000000000010/ARHGAP36.8_1688_110000_0.064027_0.019082_0.014191.png
                gene_name: ARHGAP36
               theta_stop: 0.098 
                    nperm: 110000 
                     p_ks: 0.064 
        ci_ks_bounds_left: 0.063 
       ci_ks_bounds_right: 0.065 
                   p_cons: 0.019 
      ci_cons_bounds_left: 0.018 
     ci_cons_bounds_right: 0.020 
                  p_joint: 0.014 
     ci_joint_bounds_left: 0.014 
    ci_joint_bounds_right: 0.015 

Current progress: 5 percent done.
ARHGEF11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.178264e-02	ci left: 9.116264e-01	ci right 9.225292e-01	k: 9172	n:10000
Cons ci ratio: 2.223957e-02	ci left: 7.479640e-01	ci right 7.648864e-01	k: 7565	n:10000
KS ci ratio: 1.781757e-02	ci left: 8.212717e-01	ci right 8.361363e-01	k: 8288	n:10000
ARHGEF11   10000 perm   3 sec   (3940 perm/sec)   p_kst 8.288000e-01   p_cons 7.565000e-01   p_joint 9.172000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGEF11.8_4853_10000_0.8288_0.7565_0.9172.png
                gene_name: ARHGEF11
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 7 percent done.
ARHGAP32
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.032853e-01	ci left: 1.193599e-01	ci right 1.324588e-01	k: 1258	n:10000
Cons ci ratio: 4.280852e-02	ci left: 4.462022e-01	ci right 4.658234e-01	k: 4560	n:10000
KS ci ratio: 1.163074e-01	ci left: 9.603734e-02	ci right 1.079956e-01	k: 1019	n:10000
ARHGAP32   10000 perm   2 sec   (4290 perm/sec)   p_kst 1.019000e-01   p_cons 4.560000e-01   p_joint 1.258000e-01

Joint ci ratio: 6.874160e-02	ci left: 1.350216e-01	ci right 1.446834e-01	k: 2796	n:20000
Cons ci ratio: 2.989420e-02	ci left: 4.553212e-01	ci right 4.691898e-01	k: 9245	n:20000
KS ci ratio: 8.201966e-02	ci left: 9.828040e-02	ci right 1.067356e-01	k: 2049	n:20000
ARHGAP32   20000 perm   5 sec   (3909 perm/sec)   p_kst 1.024500e-01   p_cons 4.622500e-01   p_joint 1.398000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGAP32.7_6352_20000_0.10245_0.46225_0.1398.png
                gene_name: ARHGAP32
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.098 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.14 

Current progress: 9 percent done.
ARHGEF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.625527e-02	ci left: 5.290697e-01	ci right 5.487076e-01	k: 5389	n:10000
Cons ci ratio: 1.505507e-02	ci left: 8.647828e-01	ci right 8.780001e-01	k: 8715	n:10000
KS ci ratio: 5.579244e-02	ci left: 3.211817e-01	ci right 3.397172e-01	k: 3304	n:10000
ARHGEF2   10000 perm   2 sec   (5049 perm/sec)   p_kst 3.304000e-01   p_cons 8.715000e-01   p_joint 5.389000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGEF2.7_3049_10000_0.3304_0.8715_0.5389.png
                gene_name: ARHGEF2
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 10 percent done.
AQR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.333818e-01	ci left: 7.417406e-02	ci right 8.487241e-02	k: 794	n:10000
Cons ci ratio: 2.914909e-02	ci left: 6.344240e-01	ci right 6.532922e-01	k: 6439	n:10000
KS ci ratio: 1.958891e-01	ci left: 3.471871e-02	ci right 4.235312e-02	k: 384	n:10000
AQR   10000 perm   2 sec   (4783 perm/sec)   p_kst 3.840000e-02   p_cons 6.439000e-01   p_joint 7.940000e-02

Joint ci ratio: 8.153307e-02	ci left: 9.936033e-02	ci right 1.078553e-01	k: 2071	n:20000
Cons ci ratio: 2.056076e-02	ci left: 6.383728e-01	ci right 6.516850e-01	k: 12901	n:20000
KS ci ratio: 1.348270e-01	ci left: 3.780997e-02	ci right 4.332462e-02	k: 810	n:20000
AQR   20000 perm   5 sec   (4314 perm/sec)   p_kst 4.050000e-02   p_cons 6.450500e-01   p_joint 1.035500e-01

Joint ci ratio: 6.496285e-02	ci left: 1.047063e-01	ci right 1.117698e-01	k: 3246	n:30000
Cons ci ratio: 1.684856e-02	ci left: 6.379494e-01	ci right 6.488228e-01	k: 19302	n:30000
KS ci ratio: 1.108246e-01	ci left: 3.781053e-02	ci right 4.227910e-02	k: 1200	n:30000
AQR   30000 perm   7 sec   (4136 perm/sec)   p_kst 4.000000e-02   p_cons 6.434000e-01   p_joint 1.082000e-01

Joint ci ratio: 6.629740e-02	ci left: 7.770410e-02	ci right 8.305700e-02	k: 3214	n:40000
Cons ci ratio: 1.459696e-02	ci left: 6.385077e-01	ci right 6.479215e-01	k: 25729	n:40000
KS ci ratio: 9.617554e-02	ci left: 3.795406e-02	ci right 4.181310e-02	k: 1594	n:40000
AQR   40000 perm   10 sec   (4024 perm/sec)   p_kst 3.985000e-02   p_cons 6.432250e-01   p_joint 8.035000e-02

Outputting figure to mutsig2_images.part000000000010/AQR.6_4598_40000_0.03985_0.64323_0.08035.png
                gene_name: AQR
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.040 
        ci_ks_bounds_left: 0.038 
       ci_ks_bounds_right: 0.042 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.080 
     ci_joint_bounds_left: 0.078 
    ci_joint_bounds_right: 0.083 

Current progress: 12 percent done.
AR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.132751e-02	ci left: 6.005602e-01	ci right 6.197756e-01	k: 6102	n:10000
KS ci ratio: 2.038162e-02	ci left: 7.790450e-01	ci right 7.951874e-01	k: 7872	n:10000
AR   10000 perm   2 sec   (5297 perm/sec)   p_kst 7.872000e-01   p_cons 6.102000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000010/AR.6_2819_10000_0.7872_0.6102_1.png
                gene_name: AR
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 14 percent done.
ARAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.470260e-02	ci left: 2.077708e-01	ci right 2.239950e-01	k: 2158	n:10000
Cons ci ratio: 1.020373e-01	ci left: 1.219999e-01	ci right 1.352172e-01	k: 1285	n:10000
KS ci ratio: 5.359736e-02	ci left: 3.390568e-01	ci right 3.578316e-01	k: 3484	n:10000
ARAP2   10000 perm   2 sec   (4484 perm/sec)   p_kst 3.484000e-01   p_cons 1.285000e-01   p_joint 2.158000e-01

Joint ci ratio: 5.309785e-02	ci left: 2.084319e-01	ci right 2.198513e-01	k: 4282	n:20000
Cons ci ratio: 7.034327e-02	ci left: 1.296521e-01	ci right 1.391545e-01	k: 2687	n:20000
KS ci ratio: 3.782816e-02	ci left: 3.426900e-01	ci right 3.559538e-01	k: 6986	n:20000
ARAP2   20000 perm   5 sec   (3753 perm/sec)   p_kst 3.493000e-01   p_cons 1.343500e-01   p_joint 2.141000e-01

Outputting figure to mutsig2_images.part000000000010/ARAP2.6_5243_20000_0.3493_0.13435_0.2141.png
                gene_name: ARAP2
               theta_stop: 0.070 
                    nperm: 20000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 16 percent done.
ARFGEF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.651176e-02	ci left: 2.491493e-01	ci right 2.663920e-01	k: 2577	n:10000
Cons ci ratio: 4.941957e-02	ci left: 3.765422e-01	ci right 3.957242e-01	k: 3861	n:10000
KS ci ratio: 9.623583e-02	ci left: 1.354096e-01	ci right 1.491994e-01	k: 1422	n:10000
ARFGEF1   10000 perm   2 sec   (4103 perm/sec)   p_kst 1.422000e-01   p_cons 3.861000e-01   p_joint 2.577000e-01

Outputting figure to mutsig2_images.part000000000010/ARFGEF1.6_5706_10000_0.1422_0.3861_0.2577.png
                gene_name: ARFGEF1
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 17 percent done.
ARHGAP31
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.820645e-01	ci left: 4.025478e-02	ci right 4.841334e-02	k: 442	n:10000
Cons ci ratio: 4.099081e-02	ci left: 4.677677e-01	ci right 4.874453e-01	k: 4776	n:10000
KS ci ratio: 2.809059e-01	ci left: 1.641496e-02	ci right 2.187026e-02	k: 190	n:10000
ARHGAP31   10000 perm   2 sec   (5076 perm/sec)   p_kst 1.900000e-02   p_cons 4.776000e-01   p_joint 4.420000e-02

Joint ci ratio: 1.235762e-01	ci left: 4.493272e-02	ci right 5.089960e-02	k: 957	n:20000
Cons ci ratio: 2.869832e-02	ci left: 4.756526e-01	ci right 4.895524e-01	k: 9652	n:20000
KS ci ratio: 1.994351e-01	ci left: 1.705797e-02	ci right 2.088369e-02	k: 378	n:20000
ARHGAP31   20000 perm   5 sec   (4358 perm/sec)   p_kst 1.890000e-02   p_cons 4.826000e-01   p_joint 4.785000e-02

Joint ci ratio: 9.963243e-02	ci left: 4.661691e-02	ci right 5.153755e-02	k: 1471	n:30000
Cons ci ratio: 2.358808e-02	ci left: 4.736325e-01	ci right 4.849715e-01	k: 14379	n:30000
KS ci ratio: 1.635002e-01	ci left: 1.726117e-02	ci right 2.036634e-02	k: 563	n:30000
ARHGAP31   30000 perm   7 sec   (4252 perm/sec)   p_kst 1.876667e-02   p_cons 4.793000e-01   p_joint 4.903333e-02

Joint ci ratio: 1.176591e-01	ci left: 2.540924e-02	ci right 2.860992e-02	k: 1079	n:40000
Cons ci ratio: 2.041690e-02	ci left: 4.746683e-01	ci right 4.844847e-01	k: 19183	n:40000
KS ci ratio: 1.412136e-01	ci left: 1.756392e-02	ci right 2.025657e-02	k: 755	n:40000
ARHGAP31   40000 perm   10 sec   (4165 perm/sec)   p_kst 1.887500e-02   p_cons 4.795750e-01   p_joint 2.697500e-02

Joint ci ratio: 9.111062e-02	ci left: 3.407113e-02	ci right 3.734306e-02	k: 1784	n:50000
Cons ci ratio: 1.828335e-02	ci left: 4.745926e-01	ci right 4.833699e-01	k: 23949	n:50000
KS ci ratio: 1.279013e-01	ci left: 1.725941e-02	ci right 1.963697e-02	k: 921	n:50000
ARHGAP31   50000 perm   12 sec   (4076 perm/sec)   p_kst 1.842000e-02   p_cons 4.789800e-01   p_joint 3.568000e-02

Joint ci ratio: 8.667429e-02	ci left: 3.153598e-02	ci right 3.440943e-02	k: 1977	n:60000
Cons ci ratio: 1.604138e-02	ci left: 4.947911e-01	ci right 5.028091e-01	k: 29928	n:60000
KS ci ratio: 1.176490e-01	ci left: 1.709687e-02	ci right 1.925010e-02	k: 1089	n:60000
ARHGAP31   60000 perm   15 sec   (4000 perm/sec)   p_kst 1.815000e-02   p_cons 4.988000e-01   p_joint 3.295000e-02

Joint ci ratio: 8.154502e-02	ci left: 3.065247e-02	ci right 3.327223e-02	k: 2236	n:70000
Cons ci ratio: 1.483283e-02	ci left: 4.957175e-01	ci right 5.031397e-01	k: 34960	n:70000
KS ci ratio: 1.142369e-01	ci left: 1.559702e-02	ci right 1.750050e-02	k: 1157	n:70000
ARHGAP31   70000 perm   18 sec   (3891 perm/sec)   p_kst 1.652857e-02   p_cons 4.994286e-01   p_joint 3.194286e-02

Joint ci ratio: 7.128227e-02	ci left: 3.512509e-02	ci right 3.773367e-02	k: 2913	n:80000
Cons ci ratio: 1.388296e-02	ci left: 4.956666e-01	ci right 5.026085e-01	k: 39931	n:80000
KS ci ratio: 1.078758e-01	ci left: 1.536085e-02	ci right 1.712448e-02	k: 1298	n:80000
ARHGAP31   80000 perm   21 sec   (3837 perm/sec)   p_kst 1.622500e-02   p_cons 4.991375e-01   p_joint 3.641250e-02

Joint ci ratio: 7.238724e-02	ci left: 3.041211e-02	ci right 3.270711e-02	k: 2839	n:90000
Cons ci ratio: 1.310367e-02	ci left: 4.953057e-01	ci right 5.018499e-01	k: 44872	n:90000
KS ci ratio: 1.021827e-01	ci left: 1.526613e-02	ci right 1.692082e-02	k: 1447	n:90000
ARHGAP31   90000 perm   24 sec   (3780 perm/sec)   p_kst 1.607778e-02   p_cons 4.985778e-01   p_joint 3.154444e-02

Joint ci ratio: 6.553752e-02	ci left: 3.340686e-02	ci right 3.568024e-02	k: 3453	n:100000
Cons ci ratio: 1.243244e-02	ci left: 4.954261e-01	ci right 5.016340e-01	k: 49853	n:100000
KS ci ratio: 9.663093e-02	ci left: 1.540708e-02	ci right 1.698117e-02	k: 1618	n:100000
ARHGAP31   100000 perm   27 sec   (3739 perm/sec)   p_kst 1.618000e-02   p_cons 4.985300e-01   p_joint 3.453000e-02

Outputting figure to mutsig2_images.part000000000010/ARHGAP31.6_4383_100000_0.01618_0.49853_0.03453.png
                gene_name: ARHGAP31
               theta_stop: 0.097 
                    nperm: 100000 
                     p_ks: 0.016 
        ci_ks_bounds_left: 0.015 
       ci_ks_bounds_right: 0.017 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.035 
     ci_joint_bounds_left: 0.033 
    ci_joint_bounds_right: 0.036 

Current progress: 19 percent done.
AQPEP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.090368e-02	ci left: 7.703319e-01	ci right 7.867055e-01	k: 7786	n:10000
Cons ci ratio: 6.181557e-02	ci left: 2.778498e-01	ci right 2.956746e-01	k: 2867	n:10000
KS ci ratio: 2.098245e-02	ci left: 7.690153e-01	ci right 7.854229e-01	k: 7773	n:10000
AQPEP   10000 perm   2 sec   (5754 perm/sec)   p_kst 7.773000e-01   p_cons 2.867000e-01   p_joint 7.786000e-01

Outputting figure to mutsig2_images.part000000000010/AQPEP.5_3053_10000_0.7773_0.2867_0.7786.png
                gene_name: AQPEP
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 21 percent done.
ARAP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.045098e-02	ci left: 2.280016e-01	ci right 2.447522e-01	k: 2363	n:10000
Cons ci ratio: 1.559827e-01	ci left: 5.474973e-02	ci right 6.410897e-02	k: 593	n:10000
KS ci ratio: 2.781424e-02	ci left: 6.557528e-01	ci right 6.743510e-01	k: 6651	n:10000
ARAP3   10000 perm   2 sec   (4746 perm/sec)   p_kst 6.651000e-01   p_cons 5.930000e-02   p_joint 2.363000e-01

Joint ci ratio: 5.419442e-02	ci left: 2.016998e-01	ci right 2.129854e-01	k: 4146	n:20000
Cons ci ratio: 1.071685e-01	ci left: 5.933027e-02	ci right 6.609755e-02	k: 1253	n:20000
KS ci ratio: 1.958898e-02	ci left: 6.603190e-01	ci right 6.734324e-01	k: 13338	n:20000
ARAP3   20000 perm   5 sec   (4281 perm/sec)   p_kst 6.669000e-01   p_cons 6.265000e-02   p_joint 2.073000e-01

Joint ci ratio: 4.470575e-02	ci left: 1.994192e-01	ci right 2.085716e-01	k: 6119	n:30000
Cons ci ratio: 9.248383e-02	ci left: 5.388111e-02	ci right 5.913852e-02	k: 1694	n:30000
KS ci ratio: 1.606178e-02	ci left: 6.596600e-01	ci right 6.703747e-01	k: 19951	n:30000
ARAP3   30000 perm   7 sec   (4131 perm/sec)   p_kst 6.650333e-01   p_cons 5.646667e-02   p_joint 2.039667e-01

Outputting figure to mutsig2_images.part000000000010/ARAP3.5_4763_30000_0.66503_0.056467_0.20397.png
                gene_name: ARAP3
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.056 
      ci_cons_bounds_left: 0.054 
     ci_cons_bounds_right: 0.059 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 22 percent done.
ARHGAP11A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.152409e-01	ci left: 9.769325e-02	ci right 1.097387e-01	k: 1036	n:10000
Cons ci ratio: 2.744677e-02	ci left: 6.616923e-01	ci right 6.802080e-01	k: 6710	n:10000
KS ci ratio: 2.148972e-01	ci left: 2.873209e-02	ci right 3.574387e-02	k: 321	n:10000
ARHGAP11A   10000 perm   2 sec   (5322 perm/sec)   p_kst 3.210000e-02   p_cons 6.710000e-01   p_joint 1.036000e-01

Joint ci ratio: 8.015886e-02	ci left: 1.025028e-01	ci right 1.111119e-01	k: 2135	n:20000
Cons ci ratio: 1.821904e-02	ci left: 6.918853e-01	ci right 7.046570e-01	k: 13966	n:20000
KS ci ratio: 1.544545e-01	ci left: 2.878572e-02	ci right 3.365183e-02	k: 623	n:20000
ARHGAP11A   20000 perm   4 sec   (4807 perm/sec)   p_kst 3.115000e-02   p_cons 6.983000e-01   p_joint 1.067500e-01

Joint ci ratio: 7.322328e-02	ci left: 8.399812e-02	ci right 9.041542e-02	k: 2615	n:30000
Cons ci ratio: 1.480418e-02	ci left: 6.951135e-01	ci right 7.055143e-01	k: 21010	n:30000
KS ci ratio: 1.251497e-01	ci left: 2.968161e-02	ci right 3.367643e-02	k: 949	n:30000
ARHGAP11A   30000 perm   7 sec   (4610 perm/sec)   p_kst 3.163333e-02   p_cons 7.003333e-01   p_joint 8.716667e-02

Joint ci ratio: 7.254697e-02	ci left: 6.555186e-02	ci right 7.051107e-02	k: 2720	n:40000
Cons ci ratio: 1.283409e-02	ci left: 6.953818e-01	ci right 7.043891e-01	k: 27996	n:40000
KS ci ratio: 1.078858e-01	ci left: 3.022373e-02	ci right 3.369465e-02	k: 1277	n:40000
ARHGAP11A   40000 perm   9 sec   (4481 perm/sec)   p_kst 3.192500e-02   p_cons 6.999000e-01   p_joint 6.800000e-02

Joint ci ratio: 6.886467e-02	ci left: 5.876033e-02	ci right 6.297083e-02	k: 3042	n:50000
Cons ci ratio: 1.147373e-02	ci left: 6.960621e-01	ci right 7.041146e-01	k: 35005	n:50000
KS ci ratio: 9.669967e-02	ci left: 3.027922e-02	ci right 3.337545e-02	k: 1590	n:50000
ARHGAP11A   50000 perm   11 sec   (4384 perm/sec)   p_kst 3.180000e-02   p_cons 7.001000e-01   p_joint 6.084000e-02

Outputting figure to mutsig2_images.part000000000010/ARHGAP11A.5_3143_50000_0.0318_0.7001_0.06084.png
                gene_name: ARHGAP11A
               theta_stop: 0.097 
                    nperm: 50000 
                     p_ks: 0.032 
        ci_ks_bounds_left: 0.030 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.061 
     ci_joint_bounds_left: 0.059 
    ci_joint_bounds_right: 0.063 

Current progress: 24 percent done.
ARHGAP25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.004989e-02	ci left: 4.793568e-01	ci right 4.990495e-01	k: 4892	n:10000
Cons ci ratio: 3.289058e-02	ci left: 5.770748e-01	ci right 5.964746e-01	k: 5868	n:10000
KS ci ratio: 4.137882e-02	ci left: 4.630737e-01	ci right 4.827421e-01	k: 4729	n:10000
ARHGAP25   10000 perm   2 sec   (5586 perm/sec)   p_kst 4.729000e-01   p_cons 5.868000e-01   p_joint 4.892000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGAP25.5_2025_10000_0.4729_0.5868_0.4892.png
                gene_name: ARHGAP25
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 26 percent done.
ARHGAP28
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.388648e-01	ci left: 6.865367e-02	ci right 7.899624e-02	k: 737	n:10000
Cons ci ratio: 4.269655e-02	ci left: 4.474996e-01	ci right 4.671253e-01	k: 4573	n:10000
KS ci ratio: 3.587123e-01	ci left: 9.685560e-03	ci right 1.400583e-02	k: 117	n:10000
ARHGAP28   10000 perm   2 sec   (6008 perm/sec)   p_kst 1.170000e-02   p_cons 4.573000e-01   p_joint 7.370000e-02

Joint ci ratio: 1.396534e-01	ci left: 3.524760e-02	ci right 4.058782e-02	k: 757	n:20000
Cons ci ratio: 3.076864e-02	ci left: 4.410411e-01	ci right 4.548740e-01	k: 8959	n:20000
KS ci ratio: 2.547487e-01	ci left: 1.020918e-02	ci right 1.323527e-02	k: 233	n:20000
ARHGAP28   20000 perm   4 sec   (5405 perm/sec)   p_kst 1.165000e-02   p_cons 4.479500e-01   p_joint 3.785000e-02

Joint ci ratio: 1.348374e-01	ci left: 2.554970e-02	ci right 2.927591e-02	k: 821	n:30000
Cons ci ratio: 2.517152e-02	ci left: 4.413626e-01	ci right 4.526476e-01	k: 13410	n:30000
KS ci ratio: 2.062269e-01	ci left: 1.067210e-02	ci right 1.315710e-02	k: 356	n:30000
ARHGAP28   30000 perm   6 sec   (5158 perm/sec)   p_kst 1.186667e-02   p_cons 4.470000e-01   p_joint 2.736667e-02

Joint ci ratio: 1.108788e-01	ci left: 2.861754e-02	ci right 3.200110e-02	k: 1211	n:40000
Cons ci ratio: 2.184032e-02	ci left: 4.411952e-01	ci right 4.509626e-01	k: 17843	n:40000
KS ci ratio: 1.795553e-01	ci left: 1.071704e-02	ci right 1.285471e-02	k: 470	n:40000
ARHGAP28   40000 perm   8 sec   (5010 perm/sec)   p_kst 1.175000e-02   p_cons 4.460750e-01   p_joint 3.027500e-02

Joint ci ratio: 9.941030e-02	ci left: 2.865872e-02	ci right 3.167616e-02	k: 1507	n:50000
Cons ci ratio: 1.951795e-02	ci left: 4.421358e-01	ci right 4.508705e-01	k: 22325	n:50000
KS ci ratio: 1.559418e-01	ci left: 1.150609e-02	ci right 1.347112e-02	k: 623	n:50000
ARHGAP28   50000 perm   10 sec   (4887 perm/sec)   p_kst 1.246000e-02   p_cons 4.465000e-01   p_joint 3.014000e-02

Joint ci ratio: 9.889680e-02	ci left: 2.425331e-02	ci right 2.679286e-02	k: 1530	n:60000
Cons ci ratio: 1.781928e-02	ci left: 4.424666e-01	ci right 4.504386e-01	k: 26787	n:60000
KS ci ratio: 1.413830e-01	ci left: 1.175498e-02	ci right 1.355929e-02	k: 758	n:60000
ARHGAP28   60000 perm   13 sec   (4785 perm/sec)   p_kst 1.263333e-02   p_cons 4.464500e-01   p_joint 2.550000e-02

Joint ci ratio: 9.529980e-02	ci left: 2.247416e-02	ci right 2.473700e-02	k: 1651	n:70000
Cons ci ratio: 1.609279e-02	ci left: 4.550604e-01	ci right 4.624573e-01	k: 32113	n:70000
KS ci ratio: 1.316884e-01	ci left: 1.167625e-02	ci right 1.333596e-02	k: 874	n:70000
ARHGAP28   70000 perm   15 sec   (4688 perm/sec)   p_kst 1.248571e-02   p_cons 4.587571e-01   p_joint 2.358571e-02

Joint ci ratio: 9.346966e-02	ci left: 2.050605e-02	ci right 2.252886e-02	k: 1720	n:80000
Cons ci ratio: 1.508442e-02	ci left: 4.542805e-01	ci right 4.611976e-01	k: 36619	n:80000
KS ci ratio: 1.233709e-01	ci left: 1.169311e-02	ci right 1.324255e-02	k: 996	n:80000
ARHGAP28   80000 perm   17 sec   (4598 perm/sec)   p_kst 1.245000e-02   p_cons 4.577375e-01   p_joint 2.150000e-02

Joint ci ratio: 8.281697e-02	ci left: 2.328205e-02	ci right 2.530433e-02	k: 2185	n:90000
Cons ci ratio: 1.419993e-02	ci left: 4.552405e-01	ci right 4.617622e-01	k: 41265	n:90000
KS ci ratio: 1.175756e-01	ci left: 1.148221e-02	ci right 1.292726e-02	k: 1097	n:90000
ARHGAP28   90000 perm   20 sec   (4513 perm/sec)   p_kst 1.218889e-02   p_cons 4.585000e-01   p_joint 2.427778e-02

Joint ci ratio: 7.516185e-02	ci left: 2.548381e-02	ci right 2.748379e-02	k: 2647	n:100000
Cons ci ratio: 1.347561e-02	ci left: 4.552480e-01	ci right 4.614344e-01	k: 45834	n:100000
KS ci ratio: 1.108542e-01	ci left: 1.166493e-02	ci right 1.304357e-02	k: 1234	n:100000
ARHGAP28   100000 perm   23 sec   (4434 perm/sec)   p_kst 1.234000e-02   p_cons 4.583400e-01   p_joint 2.647000e-02

Joint ci ratio: 7.596321e-02	ci left: 2.273774e-02	ci right 2.454204e-02	k: 2599	n:110000
Cons ci ratio: 1.285848e-02	ci left: 4.550068e-01	ci right 4.609045e-01	k: 50375	n:110000
KS ci ratio: 1.053231e-01	ci left: 1.178093e-02	ci right 1.309950e-02	k: 1367	n:110000
ARHGAP28   110000 perm   25 sec   (4361 perm/sec)   p_kst 1.242727e-02   p_cons 4.579545e-01   p_joint 2.362727e-02

Joint ci ratio: 7.515813e-02	ci left: 2.133289e-02	ci right 2.300698e-02	k: 2659	n:120000
Cons ci ratio: 1.258991e-02	ci left: 4.440425e-01	ci right 4.496767e-01	k: 53623	n:120000
KS ci ratio: 1.006810e-01	ci left: 1.184652e-02	ci right 1.311054e-02	k: 1496	n:120000
ARHGAP28   120000 perm   28 sec   (4291 perm/sec)   p_kst 1.246667e-02   p_cons 4.468583e-01   p_joint 2.215833e-02

Joint ci ratio: 7.617936e-02	ci left: 1.920055e-02	ci right 2.072866e-02	k: 2594	n:130000
Cons ci ratio: 1.209555e-02	ci left: 4.441717e-01	ci right 4.495845e-01	k: 58094	n:130000
KS ci ratio: 9.657302e-02	ci left: 1.191061e-02	ci right 1.312667e-02	k: 1626	n:130000
ARHGAP28   130000 perm   31 sec   (4222 perm/sec)   p_kst 1.250769e-02   p_cons 4.468769e-01   p_joint 1.995385e-02

Outputting figure to mutsig2_images.part000000000010/ARHGAP28.5_1920_130000_0.012508_0.44688_0.019954.png
                gene_name: ARHGAP28
               theta_stop: 0.097 
                    nperm: 130000 
                     p_ks: 0.013 
        ci_ks_bounds_left: 0.012 
       ci_ks_bounds_right: 0.013 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.020 
     ci_joint_bounds_left: 0.019 
    ci_joint_bounds_right: 0.021 

Current progress: 28 percent done.
ARHGAP29
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.365768e-02	ci left: 8.855472e-01	ci right 8.978236e-01	k: 8918	n:10000
Cons ci ratio: 4.988129e-02	ci left: 3.721640e-01	ci right 3.913049e-01	k: 3817	n:10000
KS ci ratio: 1.918346e-02	ci left: 7.989230e-01	ci right 8.144979e-01	k: 8068	n:10000
ARHGAP29   10000 perm   2 sec   (4671 perm/sec)   p_kst 8.068000e-01   p_cons 3.817000e-01   p_joint 8.918000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGAP29.5_3874_10000_0.8068_0.3817_0.8918.png
                gene_name: ARHGAP29
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 29 percent done.
ARHGAP33
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.310676e-02	ci left: 8.934402e-01	ci right 9.053260e-01	k: 8995	n:10000
Cons ci ratio: 3.808135e-02	ci left: 5.045512e-01	ci right 5.242404e-01	k: 5144	n:10000
KS ci ratio: 3.543881e-02	ci left: 5.403863e-01	ci right 5.599845e-01	k: 5502	n:10000
ARHGAP33   10000 perm   2 sec   (5424 perm/sec)   p_kst 5.502000e-01   p_cons 5.144000e-01   p_joint 8.995000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGAP33.5_3948_10000_0.5502_0.5144_0.8995.png
                gene_name: ARHGAP33
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.91 

Current progress: 31 percent done.
ARHGAP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.319447e-01	ci left: 7.572512e-02	ci right 8.652038e-02	k: 810	n:10000
Cons ci ratio: 4.637988e-02	ci left: 4.069129e-01	ci right 4.263357e-01	k: 4166	n:10000
KS ci ratio: 1.443225e-01	ci left: 6.372193e-02	ci right 7.373108e-02	k: 686	n:10000
ARHGAP6   10000 perm   2 sec   (5243 perm/sec)   p_kst 6.860000e-02   p_cons 4.166000e-01   p_joint 8.100000e-02

Joint ci ratio: 7.924803e-02	ci left: 1.046639e-01	ci right 1.133501e-01	k: 2179	n:20000
Cons ci ratio: 3.158729e-02	ci left: 4.281142e-01	ci right 4.419048e-01	k: 8700	n:20000
KS ci ratio: 1.011864e-01	ci left: 6.625749e-02	ci right 7.336820e-02	k: 1395	n:20000
ARHGAP6   20000 perm   4 sec   (4550 perm/sec)   p_kst 6.975000e-02   p_cons 4.350000e-01   p_joint 1.089500e-01

Joint ci ratio: 6.570267e-02	ci left: 1.025710e-01	ci right 1.095722e-01	k: 3181	n:30000
Cons ci ratio: 2.632141e-02	ci left: 4.194302e-01	ci right 4.306510e-01	k: 12751	n:30000
KS ci ratio: 8.302460e-02	ci left: 6.628788e-02	ci right 7.206256e-02	k: 2074	n:30000
ARHGAP6   30000 perm   7 sec   (4436 perm/sec)   p_kst 6.913333e-02   p_cons 4.250333e-01   p_joint 1.060333e-01

Outputting figure to mutsig2_images.part000000000010/ARHGAP6.5_3099_30000_0.069133_0.42503_0.10603.png
                gene_name: ARHGAP6
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.069 
        ci_ks_bounds_left: 0.066 
       ci_ks_bounds_right: 0.072 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 33 percent done.
ARHGEF12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.775496e-02	ci left: 5.088528e-01	ci right 5.285363e-01	k: 5187	n:10000
Cons ci ratio: 6.204299e-02	ci left: 2.763642e-01	ci right 2.941611e-01	k: 2852	n:10000
KS ci ratio: 3.645999e-02	ci left: 5.262664e-01	ci right 5.459125e-01	k: 5361	n:10000
ARHGEF12   10000 perm   2 sec   (4216 perm/sec)   p_kst 5.361000e-01   p_cons 2.852000e-01   p_joint 5.187000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGEF12.5_4799_10000_0.5361_0.2852_0.5187.png
                gene_name: ARHGEF12
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 34 percent done.
ARHGEF17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.229731e-02	ci left: 5.859043e-01	ci right 6.052400e-01	k: 5956	n:10000
Cons ci ratio: 5.667384e-02	ci left: 3.143335e-01	ci right 3.327693e-01	k: 3235	n:10000
KS ci ratio: 2.561216e-02	ci left: 6.917176e-01	ci right 7.097653e-01	k: 7008	n:10000
ARHGEF17   10000 perm   2 sec   (4511 perm/sec)   p_kst 7.008000e-01   p_cons 3.235000e-01   p_joint 5.956000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGEF17.5_6276_10000_0.7008_0.3235_0.5956.png
                gene_name: ARHGEF17
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 36 percent done.
ARHGEF9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.037083e-02	ci left: 3.675878e-01	ci right 3.866839e-01	k: 3771	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
ARHGEF9   10000 perm   2 sec   (6449 perm/sec)   p_kst 1   p_cons 3.771000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000010/ARHGEF9.5_1625_10000_1_0.3771_1.png
                gene_name: ARHGEF9
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 38 percent done.
ARF5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.963746e-02	ci left: 7.914146e-01	ci right 8.072106e-01	k: 7994	n:10000
Cons ci ratio: 2.856056e-02	ci left: 6.437780e-01	ci right 6.625327e-01	k: 6532	n:10000
KS ci ratio: 3.197654e-02	ci left: 5.907217e-01	ci right 6.100198e-01	k: 6004	n:10000
ARF5   10000 perm   1 sec   (7580 perm/sec)   p_kst 6.004000e-01   p_cons 6.532000e-01   p_joint 7.994000e-01

Outputting figure to mutsig2_images.part000000000010/ARF5.4_567_10000_0.6004_0.6532_0.7994.png
                gene_name: ARF5
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 40 percent done.
ARHGAP10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.067928e-02	ci left: 7.740800e-01	ci right 7.903553e-01	k: 7823	n:10000
KS ci ratio: 1.510876e-02	ci left: 8.639656e-01	ci right 8.772177e-01	k: 8707	n:10000
ARHGAP10   10000 perm   2 sec   (5670 perm/sec)   p_kst 8.707000e-01   p_cons 7.823000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000010/ARHGAP10.4_2453_10000_0.8707_0.7823_1.png
                gene_name: ARHGAP10
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 41 percent done.
ARHGAP12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.394779e-01	ci left: 6.807308e-02	ci right 7.837719e-02	k: 731	n:10000
Cons ci ratio: 6.205820e-02	ci left: 2.762651e-01	ci right 2.940602e-01	k: 2851	n:10000
KS ci ratio: 2.619600e-01	ci left: 1.902780e-02	ci right 2.485533e-02	k: 218	n:10000
ARHGAP12   10000 perm   2 sec   (5498 perm/sec)   p_kst 2.180000e-02   p_cons 2.851000e-01   p_joint 7.310000e-02

Joint ci ratio: 9.826617e-02	ci left: 7.006718e-02	ci right 7.735734e-02	k: 1473	n:20000
Cons ci ratio: 4.523858e-02	ci left: 2.667349e-01	ci right 2.791312e-01	k: 5458	n:20000
KS ci ratio: 1.881123e-01	ci left: 1.924843e-02	ci right 2.329242e-02	k: 424	n:20000
ARHGAP12   20000 perm   4 sec   (5046 perm/sec)   p_kst 2.120000e-02   p_cons 2.729000e-01   p_joint 7.365000e-02

Joint ci ratio: 1.068111e-01	ci left: 4.066722e-02	ci right 4.528848e-02	k: 1288	n:30000
Cons ci ratio: 3.691087e-02	ci left: 2.681631e-01	ci right 2.782808e-01	k: 8196	n:30000
KS ci ratio: 1.547767e-01	ci left: 1.931113e-02	ci right 2.258257e-02	k: 627	n:30000
ARHGAP12   30000 perm   6 sec   (4843 perm/sec)   p_kst 2.090000e-02   p_cons 2.732000e-01   p_joint 4.293333e-02

Joint ci ratio: 1.109732e-01	ci left: 2.856889e-02	ci right 3.194977e-02	k: 1209	n:40000
Cons ci ratio: 3.203501e-02	ci left: 2.679916e-01	ci right 2.767415e-01	k: 10894	n:40000
KS ci ratio: 1.337423e-01	ci left: 1.961722e-02	ci right 2.245291e-02	k: 840	n:40000
ARHGAP12   40000 perm   8 sec   (4706 perm/sec)   p_kst 2.100000e-02   p_cons 2.723500e-01   p_joint 3.022500e-02

Joint ci ratio: 7.893955e-02	ci left: 4.514166e-02	ci right 4.887116e-02	k: 2349	n:50000
Cons ci ratio: 2.849445e-02	ci left: 2.706513e-01	ci right 2.784949e-01	k: 13728	n:50000
KS ci ratio: 1.192902e-01	ci left: 1.987756e-02	ci right 2.241846e-02	k: 1056	n:50000
ARHGAP12   50000 perm   11 sec   (4527 perm/sec)   p_kst 2.112000e-02   p_cons 2.745600e-01   p_joint 4.698000e-02

Joint ci ratio: 8.656122e-02	ci left: 3.161756e-02	ci right 3.449450e-02	k: 1982	n:60000
Cons ci ratio: 2.531777e-02	ci left: 2.818550e-01	ci right 2.890991e-01	k: 17128	n:60000
KS ci ratio: 1.097124e-01	ci left: 1.968918e-02	ci right 2.199083e-02	k: 1249	n:60000
ARHGAP12   60000 perm   14 sec   (4441 perm/sec)   p_kst 2.081667e-02   p_cons 2.854667e-01   p_joint 3.303333e-02

Joint ci ratio: 9.810349e-02	ci left: 2.120491e-02	ci right 2.340637e-02	k: 1560	n:70000
Cons ci ratio: 2.352274e-02	ci left: 2.806898e-01	ci right 2.873852e-01	k: 19882	n:70000
KS ci ratio: 1.013731e-01	ci left: 1.985304e-02	ci right 2.198693e-02	k: 1463	n:70000
ARHGAP12   70000 perm   16 sec   (4360 perm/sec)   p_kst 2.090000e-02   p_cons 2.840286e-01   p_joint 2.228571e-02

Joint ci ratio: 8.902422e-02	ci left: 2.260807e-02	ci right 2.472667e-02	k: 1892	n:80000
Cons ci ratio: 2.203970e-02	ci left: 2.802415e-01	ci right 2.864992e-01	k: 22669	n:80000
KS ci ratio: 9.509168e-02	ci left: 1.981001e-02	ci right 2.179996e-02	k: 1663	n:80000
ARHGAP12   80000 perm   19 sec   (4286 perm/sec)   p_kst 2.078750e-02   p_cons 2.833625e-01   p_joint 2.365000e-02

Outputting figure to mutsig2_images.part000000000010/ARHGAP12.4_2613_80000_0.020788_0.28336_0.02365.png
                gene_name: ARHGAP12
               theta_stop: 0.095 
                    nperm: 80000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.022 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.024 
     ci_joint_bounds_left: 0.023 
    ci_joint_bounds_right: 0.025 

Current progress: 43 percent done.
ARHGAP17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.382332e-02	ci left: 4.346283e-01	ci right 4.542041e-01	k: 4444	n:10000
Cons ci ratio: 3.457387e-02	ci left: 5.526098e-01	ci right 5.721538e-01	k: 5624	n:10000
KS ci ratio: 5.364460e-02	ci left: 3.386594e-01	ci right 3.574292e-01	k: 3480	n:10000
ARHGAP17   10000 perm   2 sec   (5086 perm/sec)   p_kst 3.480000e-01   p_cons 5.624000e-01   p_joint 4.444000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGAP17.4_2726_10000_0.348_0.5624_0.4444.png
                gene_name: ARHGAP17
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 45 percent done.
ARHGAP21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.412657e-02	ci left: 5.590245e-01	ci right 5.785354e-01	k: 5688	n:10000
Cons ci ratio: 1.047675e-02	ci left: 9.283358e-01	ci right 9.382100e-01	k: 9334	n:10000
KS ci ratio: 5.870215e-02	ci left: 2.992559e-01	ci right 3.174558e-01	k: 3083	n:10000
ARHGAP21   10000 perm   2 sec   (4543 perm/sec)   p_kst 3.083000e-01   p_cons 9.334000e-01   p_joint 5.688000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGAP21.4_5977_10000_0.3083_0.9334_0.5688.png
                gene_name: ARHGAP21
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 47 percent done.
ARHGAP39
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.008330e-02	ci left: 7.840118e-01	ci right 8.000177e-01	k: 7921	n:10000
KS ci ratio: 3.525308e-02	ci left: 5.429908e-01	ci right 5.625785e-01	k: 5528	n:10000
ARHGAP39   10000 perm   2 sec   (5693 perm/sec)   p_kst 5.528000e-01   p_cons 7.921000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000010/ARHGAP39.4_3389_10000_0.5528_0.7921_1.png
                gene_name: ARHGAP39
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 48 percent done.
ARHGEF10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.767080e-02	ci left: 6.580680e-01	ci right 6.766344e-01	k: 6674	n:10000
Cons ci ratio: 1.869607e-02	ci left: 8.069435e-01	ci right 8.222728e-01	k: 8147	n:10000
KS ci ratio: 4.424278e-02	ci left: 4.299405e-01	ci right 4.494947e-01	k: 4397	n:10000
ARHGEF10   10000 perm   2 sec   (5110 perm/sec)   p_kst 4.397000e-01   p_cons 8.147000e-01   p_joint 6.674000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGEF10.4_4147_10000_0.4397_0.8147_0.6674.png
                gene_name: ARHGEF10
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 50 percent done.
ARHGEF10L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.763285e-02	ci left: 3.940629e-01	ci right 4.133932e-01	k: 4037	n:10000
Cons ci ratio: 1.164983e-01	ci left: 9.574517e-02	ci right 1.076880e-01	k: 1016	n:10000
KS ci ratio: 1.760380e-02	ci left: 8.247294e-01	ci right 8.394766e-01	k: 8322	n:10000
ARHGEF10L   10000 perm   2 sec   (5271 perm/sec)   p_kst 8.322000e-01   p_cons 1.016000e-01   p_joint 4.037000e-01

Joint ci ratio: 4.879688e-02	ci left: 2.379610e-01	ci right 2.499135e-01	k: 4878	n:20000
Cons ci ratio: 8.264998e-02	ci left: 9.690616e-02	ci right 1.053102e-01	k: 2021	n:20000
KS ci ratio: 1.176332e-02	ci left: 8.423408e-01	ci right 8.523580e-01	k: 16948	n:20000
ARHGEF10L   20000 perm   4 sec   (4780 perm/sec)   p_kst 8.474000e-01   p_cons 1.010500e-01   p_joint 2.439000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGEF10L.4_3952_20000_0.8474_0.10105_0.2439.png
                gene_name: ARHGEF10L
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.097 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 52 percent done.
AQP12A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.538379e-02	ci left: 2.556770e-01	ci right 2.730605e-01	k: 2643	n:10000
Cons ci ratio: 2.932725e-02	ci left: 6.316085e-01	ci right 6.505093e-01	k: 6411	n:10000
KS ci ratio: 1.036150e-01	ci left: 1.186757e-01	ci right 1.317435e-01	k: 1251	n:10000
AQP12A   10000 perm   2 sec   (6530 perm/sec)   p_kst 1.251000e-01   p_cons 6.411000e-01   p_joint 2.643000e-01

Joint ci ratio: 5.068775e-02	ci left: 2.243309e-01	ci right 2.360477e-01	k: 4603	n:20000
Cons ci ratio: 2.090092e-02	ci left: 6.307930e-01	ci right 6.441670e-01	k: 12750	n:20000
KS ci ratio: 7.435849e-02	ci left: 1.174451e-01	ci right 1.265651e-01	k: 2439	n:20000
AQP12A   20000 perm   3 sec   (5962 perm/sec)   p_kst 1.219500e-01   p_cons 6.375000e-01   p_joint 2.301500e-01

Outputting figure to mutsig2_images.part000000000010/AQP12A.3_904_20000_0.12195_0.6375_0.23015.png
                gene_name: AQP12A
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 53 percent done.
AQP8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.186767e-02	ci left: 9.104942e-01	ci right 9.214620e-01	k: 9161	n:10000
Cons ci ratio: 1.330145e-02	ci left: 8.906714e-01	ci right 9.026964e-01	k: 8968	n:10000
KS ci ratio: 3.409876e-02	ci left: 5.594255e-01	ci right 5.789342e-01	k: 5692	n:10000
AQP8   10000 perm   1 sec   (6800 perm/sec)   p_kst 5.692000e-01   p_cons 8.968000e-01   p_joint 9.161000e-01

Outputting figure to mutsig2_images.part000000000010/AQP8.3_810_10000_0.5692_0.8968_0.9161.png
                gene_name: AQP8
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 55 percent done.
ARAF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.372187e-02	ci left: 1.722191e-01	ci right 1.873680e-01	k: 1797	n:10000
Cons ci ratio: 8.082601e-03	ci left: 9.552412e-01	ci right 9.630885e-01	k: 9593	n:10000
KS ci ratio: 2.135306e-01	ci left: 2.911124e-02	ci right 3.616447e-02	k: 325	n:10000
ARAF   10000 perm   2 sec   (6257 perm/sec)   p_kst 3.250000e-02   p_cons 9.593000e-01   p_joint 1.797000e-01

Joint ci ratio: 9.640759e-02	ci left: 7.265752e-02	ci right 8.006620e-02	k: 1526	n:20000
Cons ci ratio: 5.542148e-03	ci left: 9.588439e-01	ci right 9.642209e-01	k: 19232	n:20000
KS ci ratio: 1.519588e-01	ci left: 2.974850e-02	ci right 3.468873e-02	k: 643	n:20000
ARAF   20000 perm   4 sec   (5608 perm/sec)   p_kst 3.215000e-02   p_cons 9.616000e-01   p_joint 7.630000e-02

Joint ci ratio: 5.365741e-02	ci left: 1.469656e-01	ci right 1.551021e-01	k: 4530	n:30000
Cons ci ratio: 4.556864e-03	ci left: 9.588160e-01	ci right 9.632275e-01	k: 28832	n:30000
KS ci ratio: 1.261126e-01	ci left: 2.922917e-02	ci right 3.319563e-02	k: 935	n:30000
ARAF   30000 perm   6 sec   (5345 perm/sec)   p_kst 3.116667e-02   p_cons 9.610667e-01   p_joint 1.510000e-01

Joint ci ratio: 6.413112e-02	ci left: 8.267885e-02	ci right 8.818151e-02	k: 3416	n:40000
Cons ci ratio: 3.961349e-03	ci left: 9.588263e-01	ci right 9.626564e-01	k: 38431	n:40000
KS ci ratio: 1.101313e-01	ci left: 2.900680e-02	ci right 3.241178e-02	k: 1227	n:40000
ARAF   40000 perm   8 sec   (5179 perm/sec)   p_kst 3.067500e-02   p_cons 9.607750e-01   p_joint 8.540000e-02

Joint ci ratio: 5.415824e-02	ci left: 9.226566e-02	ci right 9.742149e-02	k: 4741	n:50000
Cons ci ratio: 3.577340e-03	ci left: 9.582863e-01	ci right 9.617400e-01	k: 48002	n:50000
KS ci ratio: 9.867060e-02	ci left: 2.908813e-02	ci right 3.212669e-02	k: 1529	n:50000
ARAF   50000 perm   10 sec   (5049 perm/sec)   p_kst 3.058000e-02   p_cons 9.600400e-01   p_joint 9.482000e-02

Outputting figure to mutsig2_images.part000000000010/ARAF.3_1881_50000_0.03058_0.96004_0.09482.png
                gene_name: ARAF
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.095 
     ci_joint_bounds_left: 0.092 
    ci_joint_bounds_right: 0.097 

Current progress: 57 percent done.
AREG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.088478e-01	ci left: 1.085172e-01	ci right 1.211081e-01	k: 1147	n:10000
Cons ci ratio: 3.713756e-03	ci left: 9.891692e-01	ci right 9.929363e-01	k: 9912	n:10000
KS ci ratio: 1.689143e-01	ci left: 4.676942e-02	ci right 5.549443e-02	k: 510	n:10000
AREG   10000 perm   2 sec   (6240 perm/sec)   p_kst 5.100000e-02   p_cons 9.912000e-01   p_joint 1.147000e-01

Joint ci ratio: 6.135495e-02	ci left: 1.642741e-01	ci right 1.747222e-01	k: 3389	n:20000
Cons ci ratio: 2.685264e-03	ci left: 9.893244e-01	ci right 9.920300e-01	k: 19815	n:20000
KS ci ratio: 1.193201e-01	ci left: 4.813723e-02	ci right 5.429407e-02	k: 1023	n:20000
AREG   20000 perm   4 sec   (5705 perm/sec)   p_kst 5.115000e-02   p_cons 9.907500e-01   p_joint 1.694500e-01

Joint ci ratio: 5.440914e-02	ci left: 1.434720e-01	ci right 1.515297e-01	k: 4424	n:30000
Cons ci ratio: 2.164665e-03	ci left: 9.898305e-01	ci right 9.920062e-01	k: 29729	n:30000
KS ci ratio: 9.752563e-02	ci left: 4.860257e-02	ci right 5.361815e-02	k: 1532	n:30000
AREG   30000 perm   5 sec   (5476 perm/sec)   p_kst 5.106667e-02   p_cons 9.909667e-01   p_joint 1.474667e-01

Outputting figure to mutsig2_images.part000000000010/AREG.3_1558_30000_0.051067_0.99097_0.14747.png
                gene_name: AREG
               theta_stop: 0.098 
                    nperm: 30000 
                     p_ks: 0.051 
        ci_ks_bounds_left: 0.049 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 59 percent done.
ARFGAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.663449e-01	ci left: 1.837333e-02	ci right 2.411031e-02	k: 211	n:10000
Cons ci ratio: 3.339492e-02	ci left: 5.696526e-01	ci right 5.891012e-01	k: 5794	n:10000
KS ci ratio: 6.109146e-01	ci left: 2.859150e-03	ci right 5.442922e-03	k: 40	n:10000
ARFGAP2   10000 perm   2 sec   (6348 perm/sec)   p_kst 4.000000e-03   p_cons 5.794000e-01   p_joint 2.110000e-02

Joint ci ratio: 1.999736e-01	ci left: 1.696289e-02	ci right 2.077881e-02	k: 376	n:20000
Cons ci ratio: 2.361032e-02	ci left: 5.726225e-01	ci right 5.863544e-01	k: 11590	n:20000
KS ci ratio: 4.122633e-01	ci left: 3.575194e-03	ci right 5.473296e-03	k: 89	n:20000
ARFGAP2   20000 perm   4 sec   (5677 perm/sec)   p_kst 4.450000e-03   p_cons 5.795000e-01   p_joint 1.880000e-02

Joint ci ratio: 1.304178e-01	ci left: 2.732382e-02	ci right 3.116807e-02	k: 876	n:30000
Cons ci ratio: 1.934677e-02	ci left: 5.721536e-01	ci right 5.833647e-01	k: 17333	n:30000
KS ci ratio: 3.471010e-01	ci left: 3.499882e-03	ci right 4.998632e-03	k: 126	n:30000
ARFGAP2   30000 perm   6 sec   (5217 perm/sec)   p_kst 4.200000e-03   p_cons 5.777667e-01   p_joint 2.920000e-02

Joint ci ratio: 1.366763e-01	ci left: 1.877125e-02	ci right 2.154902e-02	k: 805	n:40000
Cons ci ratio: 1.679419e-02	ci left: 5.717651e-01	ci right 5.814738e-01	k: 23065	n:40000
KS ci ratio: 3.083131e-01	ci left: 3.405185e-03	ci right 4.668493e-03	k: 160	n:40000
ARFGAP2   40000 perm   8 sec   (5088 perm/sec)   p_kst 4.000000e-03   p_cons 5.766250e-01   p_joint 2.012500e-02

Joint ci ratio: 1.563227e-01	ci left: 1.144840e-02	ci right 1.340881e-02	k: 620	n:50000
Cons ci ratio: 1.546219e-02	ci left: 5.580782e-01	ci right 5.667946e-01	k: 28122	n:50000
KS ci ratio: 2.705821e-01	ci left: 3.614787e-03	ci right 4.763953e-03	k: 208	n:50000
ARFGAP2   50000 perm   10 sec   (4978 perm/sec)   p_kst 4.160000e-03   p_cons 5.624400e-01   p_joint 1.240000e-02

Joint ci ratio: 1.374039e-01	ci left: 1.246304e-02	ci right 1.431780e-02	k: 802	n:60000
Cons ci ratio: 1.373619e-02	ci left: 5.718169e-01	ci right 5.797425e-01	k: 34547	n:60000
KS ci ratio: 2.494151e-01	ci left: 3.588852e-03	ci right 4.626685e-03	k: 245	n:60000
ARFGAP2   60000 perm   12 sec   (4880 perm/sec)   p_kst 4.083333e-03   p_cons 5.757833e-01   p_joint 1.336667e-02

Joint ci ratio: 1.336351e-01	ci left: 1.133082e-02	ci right 1.296713e-02	k: 849	n:70000
Cons ci ratio: 1.274326e-02	ci left: 5.711132e-01	ci right 5.784520e-01	k: 40235	n:70000
KS ci ratio: 2.313188e-01	ci left: 3.613220e-03	ci right 4.571464e-03	k: 285	n:70000
ARFGAP2   70000 perm   15 sec   (4788 perm/sec)   p_kst 4.071429e-03   p_cons 5.747857e-01   p_joint 1.212857e-02

Joint ci ratio: 1.237485e-01	ci left: 1.162040e-02	ci right 1.316527e-02	k: 990	n:80000
Cons ci ratio: 1.192722e-02	ci left: 5.710650e-01	ci right 5.779296e-01	k: 45960	n:80000
KS ci ratio: 2.160003e-01	ci left: 3.657193e-03	ci right 4.554357e-03	k: 327	n:80000
ARFGAP2   80000 perm   17 sec   (4700 perm/sec)   p_kst 4.087500e-03   p_cons 5.745000e-01   p_joint 1.237500e-02

Joint ci ratio: 1.104150e-01	ci left: 1.304798e-02	ci right 1.458359e-02	k: 1242	n:90000
Cons ci ratio: 1.123081e-02	ci left: 5.718848e-01	ci right 5.783548e-01	k: 51761	n:90000
KS ci ratio: 2.073471e-01	ci left: 3.545440e-03	ci right 4.375924e-03	k: 355	n:90000
ARFGAP2   90000 perm   20 sec   (4615 perm/sec)   p_kst 3.944444e-03   p_cons 5.751222e-01   p_joint 1.380000e-02

Joint ci ratio: 1.125741e-01	ci left: 1.130515e-02	ci right 1.266337e-02	k: 1197	n:100000
Cons ci ratio: 1.066523e-02	ci left: 5.715586e-01	ci right 5.776971e-01	k: 57463	n:100000
KS ci ratio: 1.968457e-01	ci left: 3.561173e-03	ci right 4.348029e-03	k: 394	n:100000
ARFGAP2   100000 perm   22 sec   (4534 perm/sec)   p_kst 3.940000e-03   p_cons 5.746300e-01   p_joint 1.197000e-02

Joint ci ratio: 1.135500e-01	ci left: 1.010921e-02	ci right 1.133497e-02	k: 1178	n:110000
Cons ci ratio: 1.018126e-02	ci left: 5.711077e-01	ci right 5.769611e-01	k: 63144	n:110000
KS ci ratio: 1.865037e-01	ci left: 3.626913e-03	ci right 4.381427e-03	k: 439	n:110000
ARFGAP2   110000 perm   25 sec   (4457 perm/sec)   p_kst 3.990909e-03   p_cons 5.740364e-01   p_joint 1.070909e-02

Joint ci ratio: 1.136013e-01	ci left: 9.266546e-03	ci right 1.039067e-02	k: 1178	n:120000
Cons ci ratio: 9.745393e-03	ci left: 5.713547e-01	ci right 5.769584e-01	k: 68899	n:120000
KS ci ratio: 1.789384e-01	ci left: 3.626856e-03	ci right 4.347440e-03	k: 477	n:120000
ARFGAP2   120000 perm   27 sec   (4384 perm/sec)   p_kst 3.975000e-03   p_cons 5.741583e-01   p_joint 9.816667e-03

Joint ci ratio: 1.123536e-01	ci left: 8.755427e-03	ci right 9.805098e-03	k: 1205	n:130000
Cons ci ratio: 9.359777e-03	ci left: 5.716375e-01	ci right 5.770207e-01	k: 74663	n:130000
KS ci ratio: 1.712283e-01	ci left: 3.671509e-03	ci right 4.366287e-03	k: 521	n:130000
ARFGAP2   130000 perm   30 sec   (4315 perm/sec)   p_kst 4.007692e-03   p_cons 5.743308e-01   p_joint 9.269231e-03

Joint ci ratio: 1.160375e-01	ci left: 7.616300e-03	ci right 8.561387e-03	k: 1131	n:140000
Cons ci ratio: 9.022779e-03	ci left: 5.715476e-01	ci right 5.767350e-01	k: 80380	n:140000
KS ci ratio: 1.656152e-01	ci left: 3.655561e-03	ci right 4.322384e-03	k: 557	n:140000
ARFGAP2   140000 perm   33 sec   (4248 perm/sec)   p_kst 3.978571e-03   p_cons 5.741429e-01   p_joint 8.078571e-03

Joint ci ratio: 1.202613e-01	ci left: 6.610171e-03	ci right 7.462385e-03	k: 1054	n:150000
Cons ci ratio: 8.719622e-03	ci left: 5.714795e-01	ci right 5.764910e-01	k: 86098	n:150000
KS ci ratio: 1.598462e-01	ci left: 3.674064e-03	ci right 4.318675e-03	k: 598	n:150000
ARFGAP2   150000 perm   36 sec   (4182 perm/sec)   p_kst 3.986667e-03   p_cons 5.739867e-01   p_joint 7.026667e-03

Joint ci ratio: 1.171434e-01	ci left: 6.542694e-03	ci right 7.362825e-03	k: 1111	n:160000
Cons ci ratio: 8.449527e-03	ci left: 5.711660e-01	ci right 5.760188e-01	k: 91775	n:160000
KS ci ratio: 1.552510e-01	ci left: 3.660563e-03	ci right 4.282623e-03	k: 634	n:160000
ARFGAP2   160000 perm   39 sec   (4118 perm/sec)   p_kst 3.962500e-03   p_cons 5.735938e-01   p_joint 6.943750e-03

Joint ci ratio: 1.141578e-01	ci left: 6.494840e-03	ci right 7.286823e-03	k: 1170	n:170000
Cons ci ratio: 8.208683e-03	ci left: 5.705562e-01	ci right 5.752648e-01	k: 97395	n:170000
KS ci ratio: 1.511436e-01	ci left: 3.643224e-03	ci right 4.244476e-03	k: 669	n:170000
ARFGAP2   170000 perm   42 sec   (4056 perm/sec)   p_kst 3.935294e-03   p_cons 5.729118e-01   p_joint 6.882353e-03

Joint ci ratio: 1.104884e-01	ci left: 6.560587e-03	ci right 7.333199e-03	k: 1249	n:180000
Cons ci ratio: 7.978144e-03	ci left: 5.705776e-01	ci right 5.751534e-01	k: 103116	n:180000
KS ci ratio: 1.470322e-01	ci left: 3.644059e-03	ci right 4.227652e-03	k: 707	n:180000
ARFGAP2   180000 perm   45 sec   (3995 perm/sec)   p_kst 3.927778e-03   p_cons 5.728667e-01   p_joint 6.938889e-03

Joint ci ratio: 1.083484e-01	ci left: 6.471232e-03	ci right 7.217618e-03	k: 1299	n:190000
Cons ci ratio: 7.763827e-03	ci left: 5.707353e-01	ci right 5.751888e-01	k: 108863	n:190000
KS ci ratio: 1.432390e-01	ci left: 3.645004e-03	ci right 4.212402e-03	k: 745	n:190000
ARFGAP2   190000 perm   48 sec   (3921 perm/sec)   p_kst 3.921053e-03   p_cons 5.729632e-01   p_joint 6.836842e-03

Joint ci ratio: 1.058944e-01	ci left: 6.444494e-03	ci right 7.169911e-03	k: 1360	n:200000
Cons ci ratio: 7.571547e-03	ci left: 5.705134e-01	ci right 5.748545e-01	k: 114537	n:200000
KS ci ratio: 1.401744e-01	ci left: 3.621901e-03	ci right 4.172632e-03	k: 778	n:200000
ARFGAP2   200000 perm   52 sec   (3865 perm/sec)   p_kst 3.890000e-03   p_cons 5.726850e-01   p_joint 6.800000e-03

Joint ci ratio: 9.199824e-02	ci left: 8.176917e-03	ci right 8.970070e-03	k: 1799	n:210000
Cons ci ratio: 7.390071e-03	ci left: 5.704999e-01	ci right 5.747362e-01	k: 120250	n:210000
KS ci ratio: 1.365409e-01	ci left: 3.642510e-03	ci right 4.180850e-03	k: 820	n:210000
ARFGAP2   210000 perm   55 sec   (3810 perm/sec)   p_kst 3.904762e-03   p_cons 5.726190e-01   p_joint 8.566667e-03

Joint ci ratio: 9.058128e-02	ci left: 8.058392e-03	ci right 8.827371e-03	k: 1856	n:220000
Cons ci ratio: 7.220176e-03	ci left: 5.705478e-01	ci right 5.746867e-01	k: 125976	n:220000
KS ci ratio: 1.345127e-01	ci left: 3.586717e-03	ci right 4.108307e-03	k: 845	n:220000
ARFGAP2   220000 perm   59 sec   (3747 perm/sec)   p_kst 3.840909e-03   p_cons 5.726182e-01   p_joint 8.436364e-03

Joint ci ratio: 8.927472e-02	ci left: 7.941758e-03	ci right 8.688104e-03	k: 1911	n:230000
Cons ci ratio: 7.060168e-03	ci left: 5.706839e-01	ci right 5.747316e-01	k: 131723	n:230000
KS ci ratio: 1.323435e-01	ci left: 3.548444e-03	ci right 4.055492e-03	k: 873	n:230000
ARFGAP2   230000 perm   62 sec   (3700 perm/sec)   p_kst 3.795652e-03   p_cons 5.727087e-01   p_joint 8.308696e-03

Joint ci ratio: 8.995668e-02	ci left: 7.496722e-03	ci right 8.206907e-03	k: 1883	n:240000
Cons ci ratio: 6.907640e-03	ci left: 5.710014e-01	ci right 5.749635e-01	k: 137516	n:240000
KS ci ratio: 1.292728e-01	ci left: 3.569868e-03	ci right 4.067233e-03	k: 915	n:240000
ARFGAP2   240000 perm   66 sec   (3653 perm/sec)   p_kst 3.812500e-03   p_cons 5.729833e-01   p_joint 7.845833e-03

Joint ci ratio: 8.840062e-02	ci left: 7.458870e-03	ci right 8.152614e-03	k: 1950	n:250000
Cons ci ratio: 6.768512e-03	ci left: 5.710102e-01	ci right 5.748921e-01	k: 143238	n:250000
KS ci ratio: 1.269395e-01	ci left: 3.558713e-03	ci right 4.044902e-03	k: 949	n:250000
ARFGAP2   250000 perm   69 sec   (3609 perm/sec)   p_kst 3.796000e-03   p_cons 5.729520e-01   p_joint 7.800000e-03

Joint ci ratio: 8.796087e-02	ci left: 7.247182e-03	ci right 7.917711e-03	k: 1970	n:260000
Cons ci ratio: 6.638613e-03	ci left: 5.709343e-01	ci right 5.747410e-01	k: 148938	n:260000
KS ci ratio: 1.237224e-01	ci left: 3.608124e-03	ci right 4.087655e-03	k: 999	n:260000
ARFGAP2   260000 perm   73 sec   (3565 perm/sec)   p_kst 3.842308e-03   p_cons 5.728385e-01   p_joint 7.576923e-03

Joint ci ratio: 8.597459e-02	ci left: 7.312108e-03	ci right 7.972600e-03	k: 2062	n:270000
Cons ci ratio: 6.514832e-03	ci left: 5.709463e-01	ci right 5.746817e-01	k: 154660	n:270000
KS ci ratio: 1.205654e-01	ci left: 3.664796e-03	ci right 4.138544e-03	k: 1052	n:270000
ARFGAP2   270000 perm   77 sec   (3521 perm/sec)   p_kst 3.896296e-03   p_cons 5.728148e-01   p_joint 7.637037e-03

Joint ci ratio: 8.449321e-02	ci left: 7.306118e-03	ci right 7.954136e-03	k: 2135	n:280000
Cons ci ratio: 6.395252e-03	ci left: 5.711475e-01	ci right 5.748153e-01	k: 160435	n:280000
KS ci ratio: 1.187207e-01	ci left: 3.648238e-03	ci right 4.112124e-03	k: 1085	n:280000
ARFGAP2   280000 perm   80 sec   (3479 perm/sec)   p_kst 3.875000e-03   p_cons 5.729821e-01   p_joint 7.625000e-03

Joint ci ratio: 7.981899e-02	ci left: 7.918914e-03	ci right 8.580625e-03	k: 2391	n:290000
Cons ci ratio: 6.286362e-03	ci left: 5.709972e-01	ci right 5.746014e-01	k: 166112	n:290000
KS ci ratio: 1.168012e-01	ci left: 3.642918e-03	ci right 4.098120e-03	k: 1121	n:290000
ARFGAP2   290000 perm   84 sec   (3438 perm/sec)   p_kst 3.865517e-03   p_cons 5.728000e-01   p_joint 8.244828e-03

Joint ci ratio: 7.989743e-02	ci left: 7.641840e-03	ci right 8.281053e-03	k: 2387	n:300000
Cons ci ratio: 6.181039e-03	ci left: 5.710008e-01	ci right 5.745444e-01	k: 171832	n:300000
KS ci ratio: 1.150716e-01	ci left: 3.631532e-03	ci right 4.078136e-03	k: 1155	n:300000
ARFGAP2   300000 perm   88 sec   (3399 perm/sec)   p_kst 3.850000e-03   p_cons 5.727733e-01   p_joint 7.956667e-03

Joint ci ratio: 8.641884e-02	ci left: 6.308500e-03	ci right 6.881427e-03	k: 2043	n:310000
Cons ci ratio: 6.081800e-03	ci left: 5.709273e-01	ci right 5.744133e-01	k: 177528	n:310000
KS ci ratio: 1.134166e-01	ci left: 3.620928e-03	ci right 4.059395e-03	k: 1189	n:310000
ARFGAP2   310000 perm   93 sec   (3350 perm/sec)   p_kst 3.835484e-03   p_cons 5.726710e-01   p_joint 6.590323e-03

Joint ci ratio: 8.483420e-02	ci left: 6.346837e-03	ci right 6.912153e-03	k: 2120	n:320000
Cons ci ratio: 5.982607e-03	ci left: 5.712339e-01	ci right 5.746647e-01	k: 183344	n:320000
KS ci ratio: 1.113300e-01	ci left: 3.644449e-03	ci right 4.077112e-03	k: 1234	n:320000
ARFGAP2   320000 perm   97 sec   (3312 perm/sec)   p_kst 3.856250e-03   p_cons 5.729500e-01   p_joint 6.625000e-03

Joint ci ratio: 8.360210e-02	ci left: 6.341397e-03	ci right 6.897624e-03	k: 2183	n:330000
Cons ci ratio: 5.889714e-03	ci left: 5.713890e-01	ci right 5.747673e-01	k: 189116	n:330000
KS ci ratio: 1.098727e-01	ci left: 3.631244e-03	ci right 4.056330e-03	k: 1267	n:330000
ARFGAP2   330000 perm   101 sec   (3274 perm/sec)   p_kst 3.839394e-03   p_cons 5.730788e-01   p_joint 6.615152e-03

Joint ci ratio: 8.251464e-02	ci left: 6.321927e-03	ci right 6.868886e-03	k: 2241	n:340000
Cons ci ratio: 5.802901e-03	ci left: 5.713765e-01	ci right 5.747046e-01	k: 194834	n:340000
KS ci ratio: 1.083876e-01	ci left: 3.624573e-03	ci right 4.042777e-03	k: 1302	n:340000
ARFGAP2   340000 perm   105 sec   (3236 perm/sec)   p_kst 3.829412e-03   p_cons 5.730412e-01   p_joint 6.591176e-03

Joint ci ratio: 8.129083e-02	ci left: 6.331608e-03	ci right 6.870895e-03	k: 2309	n:350000
Cons ci ratio: 5.722990e-03	ci left: 5.710934e-01	ci right 5.743740e-01	k: 200457	n:350000
KS ci ratio: 1.071219e-01	ci left: 3.607196e-03	ci right 4.018229e-03	k: 1333	n:350000
ARFGAP2   350000 perm   109 sec   (3200 perm/sec)   p_kst 3.808571e-03   p_cons 5.727343e-01   p_joint 6.597143e-03

Joint ci ratio: 8.115701e-02	ci left: 6.177481e-03	ci right 6.702733e-03	k: 2317	n:360000
Cons ci ratio: 5.642251e-03	ci left: 5.711766e-01	ci right 5.744111e-01	k: 206206	n:360000
KS ci ratio: 1.055894e-01	ci left: 3.612448e-03	ci right 4.017825e-03	k: 1372	n:360000
ARFGAP2   360000 perm   115 sec   (3143 perm/sec)   p_kst 3.811111e-03   p_cons 5.727944e-01   p_joint 6.436111e-03

Joint ci ratio: 7.729848e-02	ci left: 6.635788e-03	ci right 7.171978e-03	k: 2553	n:370000
Cons ci ratio: 5.565819e-03	ci left: 5.711690e-01	ci right 5.743596e-01	k: 211923	n:370000
KS ci ratio: 1.042321e-01	ci left: 3.609559e-03	ci right 4.009085e-03	k: 1408	n:370000
ARFGAP2   370000 perm   119 sec   (3108 perm/sec)   p_kst 3.805405e-03   p_cons 5.727649e-01   p_joint 6.900000e-03

Joint ci ratio: 7.640712e-02	ci left: 6.616020e-03	ci right 7.144173e-03	k: 2613	n:380000
Cons ci ratio: 5.490699e-03	ci left: 5.713148e-01	ci right 5.744630e-01	k: 217698	n:380000
KS ci ratio: 1.031050e-01	ci left: 3.594032e-03	ci right 3.987278e-03	k: 1439	n:380000
ARFGAP2   380000 perm   124 sec   (3074 perm/sec)   p_kst 3.786842e-03   p_cons 5.728895e-01   p_joint 6.876316e-03

Joint ci ratio: 7.571715e-02	ci left: 6.567108e-03	ci right 7.086414e-03	k: 2661	n:390000
Cons ci ratio: 5.419817e-03	ci left: 5.713380e-01	ci right 5.744455e-01	k: 223428	n:390000
KS ci ratio: 1.021882e-01	ci left: 3.566830e-03	ci right 3.953421e-03	k: 1465	n:390000
ARFGAP2   390000 perm   128 sec   (3042 perm/sec)   p_kst 3.756410e-03   p_cons 5.728923e-01   p_joint 6.823077e-03

Joint ci ratio: 7.471314e-02	ci left: 6.579546e-03	ci right 7.092637e-03	k: 2733	n:400000
Cons ci ratio: 5.352924e-03	ci left: 5.712402e-01	ci right 5.743087e-01	k: 229110	n:400000
KS ci ratio: 1.009226e-01	ci left: 3.567810e-03	ci right 3.949434e-03	k: 1502	n:400000
ARFGAP2   400000 perm   133 sec   (3009 perm/sec)   p_kst 3.755000e-03   p_cons 5.727750e-01   p_joint 6.832500e-03

Joint ci ratio: 7.262292e-02	ci left: 6.799759e-03	ci right 7.314562e-03	k: 2892	n:410000
Cons ci ratio: 5.287103e-03	ci left: 5.712719e-01	ci right 5.743027e-01	k: 234843	n:410000
KS ci ratio: 9.947627e-02	ci left: 3.585420e-03	ci right 3.963110e-03	k: 1546	n:410000
ARFGAP2   410000 perm   138 sec   (2979 perm/sec)   p_kst 3.770732e-03   p_cons 5.727878e-01   p_joint 7.053659e-03

Outputting figure to mutsig2_images.part000000000010/ARFGAP2.3_1630_410000_0.0037707_0.57279_0.0070537.png
                gene_name: ARFGAP2
               theta_stop: 0.099 
                    nperm: 410000 
                     p_ks: 0.0038 
        ci_ks_bounds_left: 0.0036 
       ci_ks_bounds_right: 0.0040 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.0071 
     ci_joint_bounds_left: 0.0068 
    ci_joint_bounds_right: 0.0073 

Current progress: 60 percent done.
ARFGEF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.241010e-02	ci left: 2.739874e-01	ci right 2.917393e-01	k: 2828	n:10000
Cons ci ratio: 3.946939e-02	ci left: 4.866526e-01	ci right 5.063494e-01	k: 4965	n:10000
KS ci ratio: 8.723287e-02	ci left: 1.606216e-01	ci right 1.753724e-01	k: 1679	n:10000
ARFGEF2   10000 perm   2 sec   (5041 perm/sec)   p_kst 1.679000e-01   p_cons 4.965000e-01   p_joint 2.828000e-01

Outputting figure to mutsig2_images.part000000000010/ARFGEF2.3_5514_10000_0.1679_0.4965_0.2828.png
                gene_name: ARFGEF2
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 62 percent done.
ARHGAP15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.336488e-02	ci left: 4.398160e-01	ci right 4.594134e-01	k: 4496	n:10000
Cons ci ratio: 2.712419e-02	ci left: 6.669285e-01	ci right 6.853688e-01	k: 6762	n:10000
KS ci ratio: 5.556630e-02	ci left: 3.229685e-01	ci right 3.415293e-01	k: 3322	n:10000
ARHGAP15   10000 perm   1 sec   (7082 perm/sec)   p_kst 3.322000e-01   p_cons 6.762000e-01   p_joint 4.496000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGAP15.3_1480_10000_0.3322_0.6762_0.4496.png
                gene_name: ARHGAP15
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 64 percent done.
ARHGAP18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.615502e-01	ci left: 5.109258e-02	ci right 6.016847e-02	k: 555	n:10000
Cons ci ratio: 2.663449e-01	ci left: 1.837333e-02	ci right 2.411031e-02	k: 211	n:10000
KS ci ratio: 6.597726e-02	ci left: 2.522150e-01	ci right 2.695245e-01	k: 2608	n:10000
ARHGAP18   10000 perm   2 sec   (6125 perm/sec)   p_kst 2.608000e-01   p_cons 2.110000e-02   p_joint 5.550000e-02

Joint ci ratio: 1.437437e-01	ci left: 3.326778e-02	ci right 3.846828e-02	k: 716	n:20000
Cons ci ratio: 1.960353e-01	ci left: 1.767633e-02	ci right 2.156510e-02	k: 391	n:20000
KS ci ratio: 4.637670e-02	ci left: 2.570570e-01	ci right 2.693119e-01	k: 5263	n:20000
ARHGAP18   20000 perm   4 sec   (5479 perm/sec)   p_kst 2.631500e-01   p_cons 1.955000e-02   p_joint 3.580000e-02

Joint ci ratio: 1.203285e-01	ci left: 3.210725e-02	ci right 3.625027e-02	k: 1024	n:30000
Cons ci ratio: 1.695765e-01	ci left: 1.601447e-02	ci right 1.901335e-02	k: 524	n:30000
KS ci ratio: 3.789908e-02	ci left: 2.578589e-01	ci right 2.678537e-01	k: 7885	n:30000
ARHGAP18   30000 perm   6 sec   (5216 perm/sec)   p_kst 2.628333e-01   p_cons 1.746667e-02   p_joint 3.413333e-02

Joint ci ratio: 1.089920e-01	ci left: 2.961518e-02	ci right 3.305331e-02	k: 1252	n:40000
Cons ci ratio: 1.466451e-01	ci left: 1.626171e-02	ci right 1.885900e-02	k: 701	n:40000
KS ci ratio: 3.288453e-02	ci left: 2.577952e-01	ci right 2.664394e-01	k: 10484	n:40000
ARHGAP18   40000 perm   8 sec   (5074 perm/sec)   p_kst 2.621000e-01   p_cons 1.752500e-02   p_joint 3.130000e-02

Joint ci ratio: 7.890433e-02	ci left: 4.518091e-02	ci right 4.891191e-02	k: 2351	n:50000
Cons ci ratio: 1.291920e-01	ci left: 1.691079e-02	ci right 1.926563e-02	k: 903	n:50000
KS ci ratio: 2.947112e-02	ci left: 2.574928e-01	ci right 2.652149e-01	k: 13067	n:50000
ARHGAP18   50000 perm   10 sec   (4955 perm/sec)   p_kst 2.613400e-01   p_cons 1.806000e-02   p_joint 4.702000e-02

Joint ci ratio: 6.916385e-02	ci left: 4.905638e-02	ci right 5.258723e-02	k: 3048	n:60000
Cons ci ratio: 1.174297e-01	ci left: 1.716161e-02	ci right 1.931868e-02	k: 1093	n:60000
KS ci ratio: 2.681144e-02	ci left: 2.591485e-01	ci right 2.662078e-01	k: 15760	n:60000
ARHGAP18   60000 perm   12 sec   (4848 perm/sec)   p_kst 2.626667e-01   p_cons 1.821667e-02   p_joint 5.080000e-02

Joint ci ratio: 6.904991e-02	ci left: 4.249245e-02	ci right 4.554550e-02	k: 3080	n:70000
Cons ci ratio: 1.087768e-01	ci left: 1.722261e-02	ci right 1.921761e-02	k: 1274	n:70000
KS ci ratio: 2.487012e-02	ci left: 2.586742e-01	ci right 2.652027e-01	k: 18335	n:70000
ARHGAP18   70000 perm   15 sec   (4747 perm/sec)   p_kst 2.619286e-01   p_cons 1.820000e-02   p_joint 4.400000e-02

Joint ci ratio: 6.411694e-02	ci left: 4.320448e-02	ci right 4.607866e-02	k: 3570	n:80000
Cons ci ratio: 1.017566e-01	ci left: 1.728496e-02	ci right 1.915022e-02	k: 1456	n:80000
KS ci ratio: 2.332074e-02	ci left: 2.579467e-01	ci right 2.640456e-01	k: 20879	n:80000
ARHGAP18   80000 perm   17 sec   (4597 perm/sec)   p_kst 2.609875e-01   p_cons 1.820000e-02   p_joint 4.462500e-02

Joint ci ratio: 5.964923e-02	ci left: 4.442142e-02	ci right 4.716351e-02	k: 4120	n:90000
Cons ci ratio: 9.600047e-02	ci left: 1.731498e-02	ci right 1.907183e-02	k: 1636	n:90000
KS ci ratio: 2.195412e-02	ci left: 2.586976e-01	ci right 2.644511e-01	k: 23541	n:90000
ARHGAP18   90000 perm   20 sec   (4500 perm/sec)   p_kst 2.615667e-01   p_cons 1.817778e-02   p_joint 4.577778e-02

Outputting figure to mutsig2_images.part000000000010/ARHGAP18.3_2052_90000_0.26157_0.018178_0.045778.png
                gene_name: ARHGAP18
               theta_stop: 0.096 
                    nperm: 90000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.018 
      ci_cons_bounds_left: 0.017 
     ci_cons_bounds_right: 0.019 
                  p_joint: 0.046 
     ci_joint_bounds_left: 0.044 
    ci_joint_bounds_right: 0.047 

Current progress: 66 percent done.
ARHGAP22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.743137e-02	ci left: 1.960405e-01	ci right 2.119323e-01	k: 2039	n:10000
Cons ci ratio: 7.490173e-02	ci left: 2.068833e-01	ci right 2.230831e-01	k: 2149	n:10000
KS ci ratio: 1.054030e-01	ci left: 1.150598e-01	ci right 1.279615e-01	k: 1214	n:10000
ARHGAP22   10000 perm   2 sec   (6048 perm/sec)   p_kst 1.214000e-01   p_cons 2.149000e-01   p_joint 2.039000e-01

Joint ci ratio: 7.224929e-02	ci left: 1.236453e-01	ci right 1.329631e-01	k: 2565	n:20000
Cons ci ratio: 5.311363e-02	ci left: 2.083329e-01	ci right 2.197503e-01	k: 4280	n:20000
KS ci ratio: 7.470763e-02	ci left: 1.164613e-01	ci right 1.255492e-01	k: 2419	n:20000
ARHGAP22   20000 perm   4 sec   (5358 perm/sec)   p_kst 1.209500e-01   p_cons 2.140000e-01   p_joint 1.282500e-01

Outputting figure to mutsig2_images.part000000000010/ARHGAP22.3_2137_20000_0.12095_0.214_0.12825.png
                gene_name: ARHGAP22
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 67 percent done.
ARHGAP9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.462640e-02	ci left: 7.080589e-01	ci right 7.258146e-01	k: 7170	n:10000
Cons ci ratio: 4.594381e-02	ci left: 4.114968e-01	ci right 4.309491e-01	k: 4212	n:10000
KS ci ratio: 1.952111e-02	ci left: 7.933421e-01	ci right 8.090821e-01	k: 8013	n:10000
ARHGAP9   10000 perm   2 sec   (6178 perm/sec)   p_kst 8.013000e-01   p_cons 4.212000e-01   p_joint 7.170000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGAP9.3_2264_10000_0.8013_0.4212_0.717.png
                gene_name: ARHGAP9
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 69 percent done.
ARHGEF15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.035409e-02	ci left: 1.511960e-01	ci right 1.656036e-01	k: 1583	n:10000
Cons ci ratio: 1.599533e-02	ci left: 8.502907e-01	ci right 8.641005e-01	k: 8573	n:10000
KS ci ratio: 1.444354e-01	ci left: 6.362530e-02	ci right 7.362777e-02	k: 685	n:10000
ARHGEF15   10000 perm   2 sec   (6089 perm/sec)   p_kst 6.850000e-02   p_cons 8.573000e-01   p_joint 1.583000e-01

Joint ci ratio: 5.352748e-02	ci left: 2.057586e-01	ci right 2.171254e-01	k: 4228	n:20000
Cons ci ratio: 1.146626e-02	ci left: 8.489285e-01	ci right 8.587684e-01	k: 17078	n:20000
KS ci ratio: 9.980974e-02	ci left: 6.801542e-02	ci right 7.520972e-02	k: 1431	n:20000
ARHGEF15   20000 perm   4 sec   (5437 perm/sec)   p_kst 7.155000e-02   p_cons 8.539000e-01   p_joint 2.114000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGEF15.3_2586_20000_0.07155_0.8539_0.2114.png
                gene_name: ARHGEF15
               theta_stop: 0.100 
                    nperm: 20000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.075 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 71 percent done.
ARHGEF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.737222e-02	ci left: 6.629006e-01	ci right 6.813991e-01	k: 6722	n:10000
Cons ci ratio: 6.340926e-02	ci left: 2.676508e-01	ci right 2.852796e-01	k: 2764	n:10000
KS ci ratio: 1.655961e-02	ci left: 8.414233e-01	ci right 8.555730e-01	k: 8486	n:10000
ARHGEF4   10000 perm   2 sec   (6228 perm/sec)   p_kst 8.486000e-01   p_cons 2.764000e-01   p_joint 6.722000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGEF4.3_2213_10000_0.8486_0.2764_0.6722.png
                gene_name: ARHGEF4
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 72 percent done.
ARHGEF7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.578961e-02	ci left: 2.533030e-01	ci right 2.706359e-01	k: 2619	n:10000
Cons ci ratio: 1.009590e-01	ci left: 1.243474e-01	ci right 1.376684e-01	k: 1309	n:10000
KS ci ratio: 5.495838e-02	ci left: 3.278334e-01	ci right 3.464615e-01	k: 3371	n:10000
ARHGEF7   10000 perm   2 sec   (5813 perm/sec)   p_kst 3.371000e-01   p_cons 1.309000e-01   p_joint 2.619000e-01

Joint ci ratio: 3.544742e-02	ci left: 3.726680e-01	ci right 3.861671e-01	k: 7588	n:20000
Cons ci ratio: 7.055569e-02	ci left: 1.289626e-01	ci right 1.384442e-01	k: 2673	n:20000
KS ci ratio: 3.861926e-02	ci left: 3.333837e-01	ci right 3.465628e-01	k: 6799	n:20000
ARHGEF7   20000 perm   4 sec   (5218 perm/sec)   p_kst 3.399500e-01   p_cons 1.336500e-01   p_joint 3.794000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGEF7.3_2782_20000_0.33995_0.13365_0.3794.png
                gene_name: ARHGEF7
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 74 percent done.
AQP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.857837e-02	ci left: 8.088732e-01	ci right 8.241419e-01	k: 8166	n:10000
Cons ci ratio: 4.405475e-02	ci left: 4.320349e-01	ci right 4.515990e-01	k: 4418	n:10000
KS ci ratio: 6.954595e-02	ci left: 2.326438e-01	ci right 2.495073e-01	k: 2410	n:10000
AQP4   10000 perm   1 sec   (7461 perm/sec)   p_kst 2.410000e-01   p_cons 4.418000e-01   p_joint 8.166000e-01

Outputting figure to mutsig2_images.part000000000010/AQP4.2_992_10000_0.241_0.4418_0.8166.png
                gene_name: AQP4
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 76 percent done.
AQP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.876884e-02	ci left: 6.404584e-01	ci right 6.592543e-01	k: 6499	n:10000
KS ci ratio: 4.454932e-02	ci left: 4.265498e-01	ci right 4.460873e-01	k: 4363	n:10000
AQP5   10000 perm   1 sec   (7436 perm/sec)   p_kst 4.363000e-01   p_cons 6.499000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000010/AQP5.2_814_10000_0.4363_0.6499_1.png
                gene_name: AQP5
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
AQP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.169621e-02	ci left: 7.570693e-01	ci right 7.737758e-01	k: 7655	n:10000
KS ci ratio: 4.582155e-02	ci left: 4.127924e-01	ci right 4.322528e-01	k: 4225	n:10000
AQP6   10000 perm   1 sec   (6940 perm/sec)   p_kst 4.225000e-01   p_cons 7.655000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000010/AQP6.2_865_10000_0.4225_0.7655_1.png
                gene_name: AQP6
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
ARAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.942289e-02	ci left: 6.301003e-01	ci right 6.490183e-01	k: 6396	n:10000
Cons ci ratio: 2.248092e-02	ci left: 7.439188e-01	ci right 7.609339e-01	k: 7525	n:10000
KS ci ratio: 8.615640e-02	ci left: 1.640602e-01	ci right 1.789317e-01	k: 1714	n:10000
ARAP1   10000 perm   2 sec   (5375 perm/sec)   p_kst 1.714000e-01   p_cons 7.525000e-01   p_joint 6.396000e-01

Outputting figure to mutsig2_images.part000000000010/ARAP1.2_4485_10000_0.1714_0.7525_0.6396.png
                gene_name: ARAP1
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 81 percent done.
ARC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.749955e-02	ci left: 3.080829e-01	ci right 3.264237e-01	k: 3172	n:10000
Cons ci ratio: 6.596015e-02	ci left: 2.523139e-01	ci right 2.696255e-01	k: 2609	n:10000
KS ci ratio: 1.254905e-02	ci left: 9.012412e-01	ci right 9.127205e-01	k: 9071	n:10000
ARC   10000 perm   2 sec   (5888 perm/sec)   p_kst 9.071000e-01   p_cons 2.609000e-01   p_joint 3.172000e-01

Outputting figure to mutsig2_images.part000000000010/ARC.2_1195_10000_0.9071_0.2609_0.3172.png
                gene_name: ARC
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 83 percent done.
ARG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.705025e-01	ci left: 4.590587e-02	ci right 5.455854e-02	k: 501	n:10000
KS ci ratio: 5.596939e-02	ci left: 3.197920e-01	ci right 3.383077e-01	k: 3290	n:10000
ARG1   10000 perm   1 sec   (7127 perm/sec)   p_kst 3.290000e-01   p_cons 5.010000e-02   p_joint 1

Joint ci ratio: 2.149030e-02	ci left: 6.177962e-01	ci right 6.312676e-01	k: 12491	n:20000
Cons ci ratio: 1.225717e-01	ci left: 4.566069e-02	ci right 5.167140e-02	k: 972	n:20000
KS ci ratio: 3.966165e-02	ci left: 3.215933e-01	ci right 3.346567e-01	k: 6562	n:20000
ARG1   20000 perm   3 sec   (6303 perm/sec)   p_kst 3.281000e-01   p_cons 4.860000e-02   p_joint 6.245500e-01

Joint ci ratio: 3.426621e-02	ci left: 2.984989e-01	ci right 3.089391e-01	k: 9111	n:30000
Cons ci ratio: 1.004241e-01	ci left: 4.590106e-02	ci right 5.078689e-02	k: 1449	n:30000
KS ci ratio: 3.234081e-02	ci left: 3.233846e-01	ci right 3.340486e-01	k: 9861	n:30000
ARG1   30000 perm   5 sec   (5990 perm/sec)   p_kst 3.287000e-01   p_cons 4.830000e-02   p_joint 3.037000e-01

Joint ci ratio: 3.347713e-02	ci left: 2.509826e-01	ci right 2.595529e-01	k: 10210	n:40000
Cons ci ratio: 8.712020e-02	ci left: 4.607239e-02	ci right 5.029351e-02	k: 1926	n:40000
KS ci ratio: 2.799423e-02	ci left: 3.243209e-01	ci right 3.335540e-01	k: 13157	n:40000
ARG1   40000 perm   7 sec   (5783 perm/sec)   p_kst 3.289250e-01   p_cons 4.815000e-02   p_joint 2.552500e-01

Outputting figure to mutsig2_images.part000000000010/ARG1.2_1001_40000_0.32893_0.04815_0.25525.png
                gene_name: ARG1
               theta_stop: 0.087 
                    nperm: 40000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.048 
      ci_cons_bounds_left: 0.046 
     ci_cons_bounds_right: 0.050 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 84 percent done.
ARGLU1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.100668e-02	ci left: 7.686102e-01	ci right 7.850283e-01	k: 7769	n:10000
KS ci ratio: 1.649515e-02	ci left: 8.424422e-01	ci right 8.565536e-01	k: 8496	n:10000
ARGLU1   10000 perm   1 sec   (7255 perm/sec)   p_kst 8.496000e-01   p_cons 7.769000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000010/ARGLU1.2_838_10000_0.8496_0.7769_1.png
                gene_name: ARGLU1
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
ARHGAP19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.475129e-02	ci left: 8.693806e-01	ci right 8.823995e-01	k: 8760	n:10000
KS ci ratio: 1.727517e-02	ci left: 8.300197e-01	ci right 8.445832e-01	k: 8374	n:10000
ARHGAP19   10000 perm   1 sec   (6936 perm/sec)   p_kst 8.374000e-01   p_cons 8.760000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000010/ARHGAP19.2_1533_10000_0.8374_0.876_1.png
                gene_name: ARHGAP19
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
ARHGAP20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.805070e-02	ci left: 1.310025e-01	ci right 1.446093e-01	k: 1377	n:10000
Cons ci ratio: 1.053537e-01	ci left: 1.151575e-01	ci right 1.280638e-01	k: 1215	n:10000
KS ci ratio: 2.542302e-02	ci left: 6.948436e-01	ci right 7.128375e-01	k: 7039	n:10000
ARHGAP20   10000 perm   2 sec   (5750 perm/sec)   p_kst 7.039000e-01   p_cons 1.215000e-01   p_joint 1.377000e-01

Joint ci ratio: 7.434114e-02	ci left: 1.174943e-01	ci right 1.266159e-01	k: 2440	n:20000
Cons ci ratio: 7.259044e-02	ci left: 1.226116e-01	ci right 1.318970e-01	k: 2544	n:20000
KS ci ratio: 1.761998e-02	ci left: 7.058700e-01	ci right 7.184683e-01	k: 14244	n:20000
ARHGAP20   20000 perm   4 sec   (5164 perm/sec)   p_kst 7.122000e-01   p_cons 1.272000e-01   p_joint 1.220000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGAP20.2_3636_20000_0.7122_0.1272_0.122.png
                gene_name: ARHGAP20
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 90 percent done.
ARHGAP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.900490e-02	ci left: 8.018666e-01	ci right 8.173526e-01	k: 8097	n:10000
KS ci ratio: 1.373633e-01	ci left: 7.010558e-02	ci right 8.054343e-02	k: 752	n:10000
ARHGAP4   10000 perm   2 sec   (6067 perm/sec)   p_kst 7.520000e-02   p_cons 8.097000e-01   p_joint 1

Joint ci ratio: 6.955406e-03	ci left: 9.374397e-01	ci right 9.440315e-01	k: 18816	n:20000
Cons ci ratio: 1.355574e-02	ci left: 8.014610e-01	ci right 8.124496e-01	k: 16140	n:20000
KS ci ratio: 9.734244e-02	ci left: 7.133775e-02	ci right 7.868638e-02	k: 1499	n:20000
ARHGAP4   20000 perm   4 sec   (5434 perm/sec)   p_kst 7.495000e-02   p_cons 8.070000e-01   p_joint 9.408000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGAP4.2_3053_20000_0.07495_0.807_0.9408.png
                gene_name: ARHGAP4
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.075 
        ci_ks_bounds_left: 0.071 
       ci_ks_bounds_right: 0.079 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.94 

Current progress: 91 percent done.
ARHGAP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.345683e-02	ci left: 2.673539e-01	ci right 2.849767e-01	k: 2761	n:10000
Cons ci ratio: 6.382384e-02	ci left: 2.650773e-01	ci right 2.826547e-01	k: 2738	n:10000
KS ci ratio: 2.375804e-01	ci left: 2.334629e-02	ci right 2.973355e-02	k: 264	n:10000
ARHGAP5   10000 perm   2 sec   (4632 perm/sec)   p_kst 2.640000e-02   p_cons 2.738000e-01   p_joint 2.761000e-01

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 5.126661e-02	ci left: 2.203674e-01	ci right 2.320123e-01	k: 4523	n:20000
KS ci ratio: 1.646773e-01	ci left: 2.527745e-02	ci right 2.986128e-02	k: 550	n:20000
ARHGAP5   20000 perm   5 sec   (3967 perm/sec)   p_kst 2.750000e-02   p_cons 2.261500e-01   p_joint 1

Joint ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
Cons ci ratio: 4.157816e-02	ci left: 2.237917e-01	ci right 2.333276e-01	k: 6856	n:30000
KS ci ratio: 1.329373e-01	ci left: 2.629135e-02	ci right 3.006743e-02	k: 844	n:30000
ARHGAP5   30000 perm   7 sec   (4070 perm/sec)   p_kst 2.813333e-02   p_cons 2.285333e-01   p_joint 1

Joint ci ratio: 9.799510e-05	ci left: 9.999078e-01	ci right 1	k: 40000	n:40000
Cons ci ratio: 3.171878e-02	ci left: 2.719217e-01	ci right 2.807108e-01	k: 11052	n:40000
KS ci ratio: 1.131118e-01	ci left: 2.749885e-02	ci right 3.081998e-02	k: 1165	n:40000
ARHGAP5   40000 perm   10 sec   (4070 perm/sec)   p_kst 2.912500e-02   p_cons 2.763000e-01   p_joint 1

Joint ci ratio: 7.839686e-05	ci left: 9.999262e-01	ci right 1	k: 50000	n:50000
Cons ci ratio: 2.844732e-02	ci left: 2.713084e-01	ci right 2.791577e-01	k: 13761	n:50000
KS ci ratio: 1.009389e-01	ci left: 2.780014e-02	ci right 3.077485e-02	k: 1463	n:50000
ARHGAP5   50000 perm   13 sec   (3924 perm/sec)   p_kst 2.926000e-02   p_cons 2.752200e-01   p_joint 1

Joint ci ratio: 6.533116e-05	ci left: 9.999385e-01	ci right 1	k: 60000	n:60000
Cons ci ratio: 2.605078e-02	ci left: 2.704007e-01	ci right 2.775545e-01	k: 16438	n:60000
KS ci ratio: 9.118103e-02	ci left: 2.851910e-02	ci right 3.125996e-02	k: 1792	n:60000
ARHGAP5   60000 perm   16 sec   (3851 perm/sec)   p_kst 2.986667e-02   p_cons 2.739667e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000010/ARHGAP5.2_4533_60000_0.029867_0.27397_1.png
                gene_name: ARHGAP5
               theta_stop: 0.091 
                    nperm: 60000 
                     p_ks: 0.030 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.031 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
ARHGDIB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.902845e-02	ci left: 6.363347e-01	ci right 6.551803e-01	k: 6458	n:10000
Cons ci ratio: 4.342625e-02	ci left: 4.391176e-01	ci right 4.587122e-01	k: 4489	n:10000
KS ci ratio: 6.677346e-02	ci left: 2.476661e-01	ci right 2.648761e-01	k: 2562	n:10000
ARHGDIB   10000 perm   1 sec   (7391 perm/sec)   p_kst 2.562000e-01   p_cons 4.489000e-01   p_joint 6.458000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGDIB.2_626_10000_0.2562_0.4489_0.6458.png
                gene_name: ARHGDIB
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 95 percent done.
ARHGEF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.569957e-03	ci left: 9.773822e-01	ci right 9.829331e-01	k: 9803	n:10000
Cons ci ratio: 1.980869e-02	ci left: 7.885747e-01	ci right 8.044522e-01	k: 7966	n:10000
KS ci ratio: 8.276858e-03	ci left: 9.532564e-01	ci right 9.612745e-01	k: 9574	n:10000
ARHGEF1   10000 perm   2 sec   (4773 perm/sec)   p_kst 9.574000e-01   p_cons 7.966000e-01   p_joint 9.803000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGEF1.2_2896_10000_0.9574_0.7966_0.9803.png
                gene_name: ARHGEF1
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 97 percent done.
ARHGEF5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.829882e-02	ci left: 8.134449e-01	ci right 8.285676e-01	k: 8211	n:10000
KS ci ratio: 3.656271e-02	ci left: 5.248649e-01	ci right 5.445149e-01	k: 5347	n:10000
ARHGEF5   10000 perm   2 sec   (5516 perm/sec)   p_kst 5.347000e-01   p_cons 8.211000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000010/ARHGEF5.2_4850_10000_0.5347_0.8211_1.png
                gene_name: ARHGEF5
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
ARHGEF6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.805555e-02	ci left: 8.174085e-01	ci right 8.324018e-01	k: 8250	n:10000
Cons ci ratio: 6.606290e-02	ci left: 2.517205e-01	ci right 2.690193e-01	k: 2603	n:10000
KS ci ratio: 9.711277e-02	ci left: 1.332547e-01	ci right 1.469557e-01	k: 1400	n:10000
ARHGEF6   10000 perm   2 sec   (6558 perm/sec)   p_kst 1.400000e-01   p_cons 2.603000e-01   p_joint 8.250000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGEF6.2_2419_10000_0.14_0.2603_0.825.png
                gene_name: ARHGEF6
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000010
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 10 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1701>
Subject: Job 8003835: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1701>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000011> was used as the working directory.
Started at Sun Nov 11 15:03:33 2012
Results reported at Sun Nov 11 15:11:43 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000011.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000011.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 11  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000011.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    521.37 sec.
    Max Memory :      4729 MB
    Max Swap   :      7182 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
11
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 11
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 11: processing genes 906 - 995
Calculating significance of each gene.
Using projection method.
906	ARID2	9.987743e-01
907	ARID3A	5.828691e-01
908	ARID3B	1
909	ARID3C	7.738737e-01
910	ARID4A	1.336048e-01
911	ARID4B	2.781348e-01
912	ARID5A	1
913	ARID5B	9.173967e-01
914	ARIH1	1
915	ARIH2	5.665975e-01
916	ARL1	1.355714e-01
917	ARL10	1
918	ARL11	1
919	ARL13A	1.234301e-01
920	ARL13B	4.555844e-01
921	ARL14	2.483508e-01
922	ARL15	1
923	ARL16	1
924	ARL2	1
925	ARL2BP	7.647332e-02
926	ARL3	1
927	ARL4A	4.877246e-01
928	ARL4C	1
929	ARL4D	1
930	ARL5A	3.026427e-01
931	ARL5B	1
932	ARL6	3.313772e-02
933	ARL6IP1	6.004132e-01
934	ARL6IP4	1
935	ARL6IP5	1
936	ARL6IP6	1
937	ARL8A	3.119786e-01
938	ARL8B	1
939	ARL9	1
940	ARMC1	7.660381e-02
941	ARMC10	6.691933e-01
942	ARMC2	7.236908e-01
943	ARMC3	1
944	ARMC4	2.633798e-01
945	ARMC5	6.963361e-01
946	ARMC6	8.578245e-01
947	ARMC7	6.224752e-01
948	ARMC8	5.314506e-01
949	ARMC9	1
950	ARMCX1	5.138437e-01
951	ARMCX2	1.589674e-01
952	ARMCX3	6.763395e-01
953	ARMCX5	4.108496e-01
954	ARMCX6	4.764296e-01
955	ARMS2	1
956	ARNT	9.764691e-01
957	ARNT2	1.771296e-01
958	ARNTL	6.134338e-01
959	ARNTL2	1
960	ARPC1A	7.798748e-02
961	ARPC1B	1
962	ARPC2	1
963	ARPC3	1
964	ARPC4	1
965	ARPC5	1
966	ARPC5L	1
967	ARPM1	8.358077e-02
968	ARPP19	1
969	ARPP21	2.337342e-02
970	ARR3	4.114461e-01
971	ARRB1	3.652039e-01
972	ARRB2	1
973	ARRDC1	7.957769e-01
974	ARRDC2	1
975	ARRDC3	5.280000e-01
976	ARRDC4	2.212480e-02
977	ARRDC5	3.370021e-01
978	ARSA	5.139731e-01
979	ARSB	6.955928e-01
980	ARSD	9.086970e-01
981	ARSE	7.573742e-01
982	ARSF	5.661228e-01
983	ARSG	6.210202e-01
984	ARSH	2.238323e-01
985	ARSI	2.656721e-01
986	ARSJ	1
987	ARSK	8.973646e-01
988	ART1	1
989	ART3	2.470809e-01
990	ART4	6.617169e-01
991	ART5	3.282720e-01
992	ARTN	1
993	ARV1	1
994	ARVCF	8.366986e-01
995	AS3MT	1.739707e-01
Done

Running MutSig 2:
Scatter job 11: processing genes 906 - 995
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ARID2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.391093e-02	ci left: 8.818604e-01	ci right 8.943125e-01	k: 8882	n:10000
Cons ci ratio: 1.777363e-02	ci left: 8.219835e-01	ci right 8.368241e-01	k: 8295	n:10000
KS ci ratio: 3.950888e-02	ci left: 4.861529e-01	ci right 5.058495e-01	k: 4960	n:10000
ARID2   10000 perm   3 sec   (3942 perm/sec)   p_kst 4.960000e-01   p_cons 8.295000e-01   p_joint 8.882000e-01

Outputting figure to mutsig2_images.part000000000011/ARID2.12_5592_10000_0.496_0.8295_0.8882.png
                gene_name: ARID2
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 3 percent done.
ARID4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.186790e-02	ci left: 1.788095e-01	ci right 1.941736e-01	k: 1864	n:10000
Cons ci ratio: 4.584535e-03	ci left: 9.841492e-01	ci right 9.887610e-01	k: 9866	n:10000
KS ci ratio: 1.297800e-01	ci left: 7.814990e-02	ci right 8.909410e-02	k: 835	n:10000
ARID4A   10000 perm   2 sec   (4469 perm/sec)   p_kst 8.350000e-02   p_cons 9.866000e-01   p_joint 1.864000e-01

Joint ci ratio: 5.673382e-02	ci left: 1.872042e-01	ci right 1.981853e-01	k: 3853	n:20000
Cons ci ratio: 3.578731e-03	ci left: 9.817954e-01	ci right 9.853620e-01	k: 19673	n:20000
KS ci ratio: 8.876230e-02	ci left: 8.489271e-02	ci right 9.282730e-02	k: 1776	n:20000
ARID4A   20000 perm   5 sec   (4036 perm/sec)   p_kst 8.880000e-02   p_cons 9.836500e-01   p_joint 1.926500e-01

Outputting figure to mutsig2_images.part000000000011/ARID4A.9_3866_20000_0.0888_0.98365_0.19265.png
                gene_name: ARID4A
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.089 
        ci_ks_bounds_left: 0.085 
       ci_ks_bounds_right: 0.093 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 5 percent done.
ARMC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.983124e-01	ci left: 3.386163e-02	ci right 4.141078e-02	k: 375	n:10000
Cons ci ratio: 3.823649e-01	ci left: 8.414755e-03	ci right 1.247803e-02	k: 103	n:10000
KS ci ratio: 8.307477e-02	ci left: 1.744810e-01	ci right 1.897046e-01	k: 1820	n:10000
ARMC4   10000 perm   2 sec   (4609 perm/sec)   p_kst 1.820000e-01   p_cons 1.030000e-02   p_joint 3.750000e-02

Joint ci ratio: 1.422079e-01	ci left: 3.399185e-02	ci right 3.924397e-02	k: 731	n:20000
Cons ci ratio: 2.640385e-01	ci left: 9.460703e-03	ci right 1.238410e-02	k: 217	n:20000
KS ci ratio: 5.841046e-02	ci left: 1.784039e-01	ci right 1.891882e-01	k: 3675	n:20000
ARMC4   20000 perm   5 sec   (4195 perm/sec)   p_kst 1.837500e-01   p_cons 1.085000e-02   p_joint 3.655000e-02

Joint ci ratio: 1.092239e-01	ci left: 3.891389e-02	ci right 4.344218e-02	k: 1234	n:30000
Cons ci ratio: 2.259452e-01	ci left: 8.810667e-03	ci right 1.108575e-02	k: 297	n:30000
KS ci ratio: 4.715339e-02	ci left: 1.827998e-01	ci right 1.916609e-01	k: 5616	n:30000
ARMC4   30000 perm   7 sec   (4028 perm/sec)   p_kst 1.872000e-01   p_cons 9.900000e-03   p_joint 4.113333e-02

Joint ci ratio: 1.120764e-01	ci left: 2.800947e-02	ci right 3.135927e-02	k: 1186	n:40000
Cons ci ratio: 1.957580e-01	ci left: 8.952977e-03	ci right 1.091915e-02	k: 396	n:40000
KS ci ratio: 4.085066e-02	ci left: 1.832885e-01	ci right 1.909570e-01	k: 7484	n:40000
ARMC4   40000 perm   10 sec   (3925 perm/sec)   p_kst 1.871000e-01   p_cons 9.900000e-03   p_joint 2.965000e-02

Joint ci ratio: 1.391675e-01	ci left: 1.453199e-02	ci right 1.672477e-02	k: 780	n:50000
Cons ci ratio: 1.728626e-01	ci left: 9.299522e-03	ci right 1.107804e-02	k: 508	n:50000
KS ci ratio: 3.835856e-02	ci left: 1.694555e-01	ci right 1.761026e-01	k: 8638	n:50000
ARMC4   50000 perm   13 sec   (3794 perm/sec)   p_kst 1.727600e-01   p_cons 1.016000e-02   p_joint 1.560000e-02

Joint ci ratio: 1.482614e-01	ci left: 1.066224e-02	ci right 1.238550e-02	k: 690	n:60000
Cons ci ratio: 1.567420e-01	ci left: 9.507549e-03	ci right 1.114034e-02	k: 618	n:60000
KS ci ratio: 3.511025e-02	ci left: 1.689880e-01	ci right 1.750438e-01	k: 10320	n:60000
ARMC4   60000 perm   16 sec   (3726 perm/sec)   p_kst 1.720000e-01   p_cons 1.030000e-02   p_joint 1.150000e-02

Joint ci ratio: 7.459069e-02	ci left: 3.653954e-02	ci right 3.938464e-02	k: 2656	n:70000
Cons ci ratio: 1.530384e-01	ci left: 8.574699e-03	ci right 1.000928e-02	k: 649	n:70000
KS ci ratio: 3.232305e-02	ci left: 1.708147e-01	ci right 1.764409e-01	k: 12153	n:70000
ARMC4   70000 perm   19 sec   (3637 perm/sec)   p_kst 1.736143e-01   p_cons 9.271429e-03   p_joint 3.794286e-02

Joint ci ratio: 7.575313e-02	ci left: 3.115925e-02	ci right 3.362482e-02	k: 2590	n:80000
Cons ci ratio: 1.352744e-01	ci left: 9.684396e-03	ci right 1.110145e-02	k: 830	n:80000
KS ci ratio: 3.020952e-02	ci left: 1.712419e-01	ci right 1.765068e-01	k: 13909	n:80000
ARMC4   80000 perm   22 sec   (3585 perm/sec)   p_kst 1.738625e-01   p_cons 1.037500e-02   p_joint 3.237500e-02

Joint ci ratio: 7.909465e-02	ci left: 2.551487e-02	ci right 2.762691e-02	k: 2390	n:90000
Cons ci ratio: 1.280145e-01	ci left: 9.650640e-03	ci right 1.098121e-02	k: 927	n:90000
KS ci ratio: 2.846063e-02	ci left: 1.716055e-01	ci right 1.765711e-01	k: 15667	n:90000
ARMC4   90000 perm   26 sec   (3476 perm/sec)   p_kst 1.740778e-01   p_cons 1.030000e-02   p_joint 2.655556e-02

Joint ci ratio: 7.826856e-02	ci left: 2.351140e-02	ci right 2.543632e-02	k: 2446	n:100000
Cons ci ratio: 1.213924e-01	ci left: 9.693159e-03	ci right 1.095549e-02	k: 1031	n:100000
KS ci ratio: 2.697377e-02	ci left: 1.720129e-01	ci right 1.767261e-01	k: 17436	n:100000
ARMC4   100000 perm   30 sec   (3333 perm/sec)   p_kst 1.743600e-01   p_cons 1.031000e-02   p_joint 2.446000e-02

Joint ci ratio: 7.172477e-02	ci left: 2.548733e-02	ci right 2.739230e-02	k: 2907	n:110000
Cons ci ratio: 1.153434e-01	ci left: 9.791215e-03	ci right 1.099844e-02	k: 1142	n:110000
KS ci ratio: 2.574589e-02	ci left: 1.718180e-01	ci right 1.763083e-01	k: 19146	n:110000
ARMC4   110000 perm   34 sec   (3277 perm/sec)   p_kst 1.740545e-01   p_cons 1.038182e-02   p_joint 2.642727e-02

Joint ci ratio: 7.001304e-02	ci left: 2.456626e-02	ci right 2.635677e-02	k: 3054	n:120000
Cons ci ratio: 1.180286e-01	ci left: 8.570452e-03	ci right 9.653471e-03	k: 1092	n:120000
KS ci ratio: 2.463242e-02	ci left: 1.721158e-01	ci right 1.764166e-01	k: 20911	n:120000
ARMC4   120000 perm   37 sec   (3257 perm/sec)   p_kst 1.742583e-01   p_cons 9.100000e-03   p_joint 2.545000e-02

Joint ci ratio: 6.597455e-02	ci left: 2.556550e-02	ci right 2.731725e-02	k: 3436	n:130000
Cons ci ratio: 1.141342e-01	ci left: 8.478805e-03	ci right 9.512506e-03	k: 1168	n:130000
KS ci ratio: 2.370071e-02	ci left: 1.717818e-01	ci right 1.759096e-01	k: 22599	n:130000
ARMC4   130000 perm   40 sec   (3215 perm/sec)   p_kst 1.738385e-01   p_cons 8.984615e-03   p_joint 2.643077e-02

Joint ci ratio: 5.488932e-02	ci left: 3.418435e-02	ci right 3.612068e-02	k: 4920	n:140000
Cons ci ratio: 1.062524e-01	ci left: 9.116699e-03	ci right 1.014662e-02	k: 1347	n:140000
KS ci ratio: 2.286101e-02	ci left: 1.715765e-01	ci right 1.755513e-01	k: 24298	n:140000
ARMC4   140000 perm   44 sec   (3179 perm/sec)   p_kst 1.735571e-01   p_cons 9.621429e-03   p_joint 3.514286e-02

Joint ci ratio: 5.319304e-02	ci left: 3.400982e-02	ci right 3.587488e-02	k: 5240	n:150000
Cons ci ratio: 1.026957e-01	ci left: 9.125707e-03	ci right 1.012005e-02	k: 1442	n:150000
KS ci ratio: 2.211959e-02	ci left: 1.712083e-01	ci right 1.750443e-01	k: 25968	n:150000
ARMC4   150000 perm   48 sec   (3147 perm/sec)   p_kst 1.731200e-01   p_cons 9.613333e-03   p_joint 3.493333e-02

Joint ci ratio: 5.053495e-02	ci left: 3.532709e-02	ci right 3.716477e-02	k: 5798	n:160000
Cons ci ratio: 9.950657e-02	ci left: 9.127996e-03	ci right 1.008990e-02	k: 1536	n:160000
KS ci ratio: 2.141733e-02	ci left: 1.712677e-01	ci right 1.749817e-01	k: 27699	n:160000
ARMC4   160000 perm   51 sec   (3118 perm/sec)   p_kst 1.731187e-01   p_cons 9.600000e-03   p_joint 3.623750e-02

Outputting figure to mutsig2_images.part000000000011/ARMC4.8_3211_160000_0.17312_0.0096_0.036237.png
                gene_name: ARMC4
               theta_stop: 0.100 
                    nperm: 160000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.0096 
      ci_cons_bounds_left: 0.0091 
     ci_cons_bounds_right: 0.010 
                  p_joint: 0.036 
     ci_joint_bounds_left: 0.035 
    ci_joint_bounds_right: 0.037 

Current progress: 8 percent done.
ARPP21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.075182e-02	ci left: 9.249261e-01	ci right 9.350217e-01	k: 9301	n:10000
Cons ci ratio: 1.261589e-02	ci left: 9.003168e-01	ci right 9.118454e-01	k: 9062	n:10000
KS ci ratio: 2.199815e-02	ci left: 7.520101e-01	ci right 7.688379e-01	k: 7605	n:10000
ARPP21   10000 perm   2 sec   (4964 perm/sec)   p_kst 7.605000e-01   p_cons 9.062000e-01   p_joint 9.301000e-01

Outputting figure to mutsig2_images.part000000000011/ARPP21.8_2524_10000_0.7605_0.9062_0.9301.png
                gene_name: ARPP21
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.94 

Current progress: 11 percent done.
ARID4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.298170e-02	ci left: 7.355281e-01	ci right 7.527294e-01	k: 7442	n:10000
Cons ci ratio: 6.106031e-03	ci left: 9.732324e-01	ci right 9.792858e-01	k: 9764	n:10000
KS ci ratio: 4.145358e-02	ci left: 4.621749e-01	ci right 4.818414e-01	k: 4720	n:10000
ARID4B   10000 perm   2 sec   (4724 perm/sec)   p_kst 4.720000e-01   p_cons 9.764000e-01   p_joint 7.442000e-01

Outputting figure to mutsig2_images.part000000000011/ARID4B.7_4031_10000_0.472_0.9764_0.7442.png
                gene_name: ARID4B
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.75 

Current progress: 13 percent done.
ARMCX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.814106e-02	ci left: 3.889845e-01	ci right 4.082746e-01	k: 3986	n:10000
Cons ci ratio: 2.482064e-02	ci left: 7.048299e-01	ci right 7.226454e-01	k: 7138	n:10000
KS ci ratio: 7.487955e-02	ci left: 2.069819e-01	ci right 2.231844e-01	k: 2150	n:10000
ARMCX2   10000 perm   2 sec   (5842 perm/sec)   p_kst 2.150000e-01   p_cons 7.138000e-01   p_joint 3.986000e-01

Outputting figure to mutsig2_images.part000000000011/ARMCX2.5_1903_10000_0.215_0.7138_0.3986.png
                gene_name: ARMCX2
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 16 percent done.
ARNT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.143295e-02	ci left: 5.989536e-01	ci right 6.181831e-01	k: 6086	n:10000
Cons ci ratio: 4.094976e-02	ci left: 4.682672e-01	ci right 4.879456e-01	k: 4781	n:10000
KS ci ratio: 3.163120e-02	ci left: 5.959416e-01	ci right 6.151968e-01	k: 6056	n:10000
ARNT2   10000 perm   2 sec   (5095 perm/sec)   p_kst 6.056000e-01   p_cons 4.781000e-01   p_joint 6.086000e-01

Outputting figure to mutsig2_images.part000000000011/ARNT2.5_2230_10000_0.6056_0.4781_0.6086.png
                gene_name: ARNT2
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 18 percent done.
ARRDC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.518041e-02	ci left: 3.260462e-01	ci right 3.446498e-01	k: 3353	n:10000
Cons ci ratio: 4.579340e-02	ci left: 4.130914e-01	ci right 4.325536e-01	k: 4228	n:10000
KS ci ratio: 7.045098e-02	ci left: 2.280016e-01	ci right 2.447522e-01	k: 2363	n:10000
ARRDC4   10000 perm   2 sec   (5365 perm/sec)   p_kst 2.363000e-01   p_cons 4.228000e-01   p_joint 3.353000e-01

Outputting figure to mutsig2_images.part000000000011/ARRDC4.5_1289_10000_0.2363_0.4228_0.3353.png
                gene_name: ARRDC4
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 21 percent done.
ARMC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.476548e-02	ci left: 1.391331e-01	ci right 1.530738e-01	k: 1460	n:10000
Cons ci ratio: 2.335591e-02	ci left: 7.292631e-01	ci right 7.465981e-01	k: 7380	n:10000
KS ci ratio: 2.155899e-01	ci left: 2.854258e-02	ci right 3.553353e-02	k: 319	n:10000
ARMC5   10000 perm   2 sec   (5099 perm/sec)   p_kst 3.190000e-02   p_cons 7.380000e-01   p_joint 1.460000e-01

Joint ci ratio: 8.794992e-02	ci left: 8.636261e-02	ci right 9.435695e-02	k: 1806	n:20000
Cons ci ratio: 1.640434e-02	ci left: 7.344658e-01	ci right 7.466642e-01	k: 14812	n:20000
KS ci ratio: 1.589819e-01	ci left: 2.715054e-02	ci right 3.188756e-02	k: 589	n:20000
ARMC5   20000 perm   4 sec   (4710 perm/sec)   p_kst 2.945000e-02   p_cons 7.406000e-01   p_joint 9.030000e-02

Joint ci ratio: 8.330529e-02	ci left: 6.586293e-02	ci right 7.162093e-02	k: 2061	n:30000
Cons ci ratio: 1.346851e-02	ci left: 7.334541e-01	ci right 7.434330e-01	k: 22154	n:30000
KS ci ratio: 1.291342e-01	ci left: 2.787259e-02	ci right 3.175251e-02	k: 893	n:30000
ARMC5   30000 perm   7 sec   (4452 perm/sec)   p_kst 2.976667e-02   p_cons 7.384667e-01   p_joint 6.870000e-02

Joint ci ratio: 6.162983e-02	ci left: 8.901222e-02	ci right 9.469719e-02	k: 3673	n:40000
Cons ci ratio: 1.127679e-02	ci left: 7.470333e-01	ci right 7.555302e-01	k: 30052	n:40000
KS ci ratio: 1.072375e-01	ci left: 3.058895e-02	ci right 3.407937e-02	k: 1292	n:40000
ARMC5   40000 perm   9 sec   (4354 perm/sec)   p_kst 3.230000e-02   p_cons 7.513000e-01   p_joint 9.182500e-02

Joint ci ratio: 6.679676e-02	ci left: 6.228347e-02	ci right 6.660726e-02	k: 3221	n:50000
Cons ci ratio: 1.038427e-02	ci left: 7.363926e-01	ci right 7.440994e-01	k: 37013	n:50000
KS ci ratio: 9.589333e-02	ci left: 3.078708e-02	ci right 3.390752e-02	k: 1616	n:50000
ARMC5   50000 perm   12 sec   (4274 perm/sec)   p_kst 3.232000e-02   p_cons 7.402600e-01   p_joint 6.442000e-02

Outputting figure to mutsig2_images.part000000000011/ARMC5.4_3146_50000_0.03232_0.74026_0.06442.png
                gene_name: ARMC5
               theta_stop: 0.096 
                    nperm: 50000 
                     p_ks: 0.032 
        ci_ks_bounds_left: 0.031 
       ci_ks_bounds_right: 0.034 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.064 
     ci_joint_bounds_left: 0.062 
    ci_joint_bounds_right: 0.067 

Current progress: 24 percent done.
ARMC8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.011880e-02	ci left: 9.326804e-01	ci right 9.422628e-01	k: 9376	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
ARMC8   10000 perm   3 sec   (3596 perm/sec)   p_kst 1   p_cons 9.376000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000011/ARMC8.4_2134_10000_1_0.9376_1.png
                gene_name: ARMC8
               theta_stop: 0.010 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 26 percent done.
ARPC1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.432992e-01	ci left: 2.221701e-02	ci right 2.846368e-02	k: 252	n:10000
Cons ci ratio: 5.781514e-03	ci left: 9.757832e-01	ci right 9.815332e-01	k: 9788	n:10000
KS ci ratio: 3.187220e-01	ci left: 1.252543e-02	ci right 1.736316e-02	k: 148	n:10000
ARPC1A   10000 perm   2 sec   (5799 perm/sec)   p_kst 1.480000e-02   p_cons 9.788000e-01   p_joint 2.520000e-02

Joint ci ratio: 1.812584e-01	ci left: 2.077592e-02	ci right 2.496439e-02	k: 456	n:20000
Cons ci ratio: 4.064079e-03	ci left: 9.769168e-01	ci right 9.809423e-01	k: 19580	n:20000
KS ci ratio: 2.360574e-01	ci left: 1.199373e-02	ci right 1.524994e-02	k: 271	n:20000
ARPC1A   20000 perm   4 sec   (5294 perm/sec)   p_kst 1.355000e-02   p_cons 9.790000e-01   p_joint 2.280000e-02

Joint ci ratio: 1.506624e-01	ci left: 2.040200e-02	ci right 2.375811e-02	k: 661	n:30000
Cons ci ratio: 3.327827e-03	ci left: 9.771753e-01	ci right 9.804644e-01	k: 29366	n:30000
KS ci ratio: 1.870157e-01	ci left: 1.308242e-02	ci right 1.581280e-02	k: 432	n:30000
ARPC1A   30000 perm   6 sec   (5141 perm/sec)   p_kst 1.440000e-02   p_cons 9.788667e-01   p_joint 2.203333e-02

Joint ci ratio: 1.314456e-01	ci left: 2.031864e-02	ci right 2.320137e-02	k: 869	n:40000
Cons ci ratio: 2.866938e-03	ci left: 9.776245e-01	ci right 9.804553e-01	k: 39163	n:40000
KS ci ratio: 1.630147e-01	ci left: 1.308740e-02	ci right 1.543390e-02	k: 569	n:40000
ARPC1A   40000 perm   8 sec   (4874 perm/sec)   p_kst 1.422500e-02   p_cons 9.790750e-01   p_joint 2.172500e-02

Joint ci ratio: 1.375658e-01	ci left: 1.487971e-02	ci right 1.709700e-02	k: 798	n:50000
Cons ci ratio: 2.581127e-03	ci left: 9.774992e-01	ci right 9.800448e-01	k: 48940	n:50000
KS ci ratio: 1.489652e-01	ci left: 1.264162e-02	ci right 1.469541e-02	k: 682	n:50000
ARPC1A   50000 perm   10 sec   (4842 perm/sec)   p_kst 1.364000e-02   p_cons 9.788000e-01   p_joint 1.596000e-02

Joint ci ratio: 1.391712e-01	ci left: 1.214110e-02	ci right 1.397311e-02	k: 782	n:60000
Cons ci ratio: 2.333274e-03	ci left: 9.780263e-01	ci right 9.803270e-01	k: 58752	n:60000
KS ci ratio: 1.391712e-01	ci left: 1.214110e-02	ci right 1.397311e-02	k: 782	n:60000
ARPC1A   60000 perm   13 sec   (4798 perm/sec)   p_kst 1.303333e-02   p_cons 9.792000e-01   p_joint 1.303333e-02

Joint ci ratio: 1.301899e-01	ci left: 1.195271e-02	ci right 1.363089e-02	k: 894	n:70000
Cons ci ratio: 2.185679e-03	ci left: 9.776179e-01	ci right 9.797708e-01	k: 68510	n:70000
KS ci ratio: 1.301899e-01	ci left: 1.195271e-02	ci right 1.363089e-02	k: 894	n:70000
ARPC1A   70000 perm   15 sec   (4738 perm/sec)   p_kst 1.277143e-02   p_cons 9.787143e-01   p_joint 1.277143e-02

Joint ci ratio: 1.211745e-01	ci left: 1.212950e-02	ci right 1.370611e-02	k: 1032	n:80000
Cons ci ratio: 2.051868e-03	ci left: 9.775351e-01	ci right 9.795550e-01	k: 78285	n:80000
KS ci ratio: 1.211745e-01	ci left: 1.212950e-02	ci right 1.370611e-02	k: 1032	n:80000
ARPC1A   80000 perm   17 sec   (4676 perm/sec)   p_kst 1.290000e-02   p_cons 9.785625e-01   p_joint 1.290000e-02

Joint ci ratio: 1.140520e-01	ci left: 1.221614e-02	ci right 1.370439e-02	k: 1165	n:90000
Cons ci ratio: 1.935807e-03	ci left: 9.775653e-01	ci right 9.794703e-01	k: 88068	n:90000
KS ci ratio: 1.140520e-01	ci left: 1.221614e-02	ci right 1.370439e-02	k: 1165	n:90000
ARPC1A   90000 perm   20 sec   (4615 perm/sec)   p_kst 1.294444e-02   p_cons 9.785333e-01   p_joint 1.294444e-02

Joint ci ratio: 1.091227e-01	ci left: 1.204433e-02	ci right 1.344415e-02	k: 1273	n:100000
Cons ci ratio: 1.819458e-03	ci left: 9.780106e-01	ci right 9.798014e-01	k: 97892	n:100000
KS ci ratio: 1.091227e-01	ci left: 1.204433e-02	ci right 1.344415e-02	k: 1273	n:100000
ARPC1A   100000 perm   22 sec   (4545 perm/sec)   p_kst 1.273000e-02   p_cons 9.789200e-01   p_joint 1.273000e-02

Joint ci ratio: 1.037971e-01	ci left: 1.213517e-02	ci right 1.347252e-02	k: 1407	n:110000
Cons ci ratio: 1.735973e-03	ci left: 9.780241e-01	ci right 9.797323e-01	k: 107678	n:110000
KS ci ratio: 1.037971e-01	ci left: 1.213517e-02	ci right 1.347252e-02	k: 1407	n:110000
ARPC1A   110000 perm   25 sec   (4479 perm/sec)   p_kst 1.279091e-02   p_cons 9.788909e-01   p_joint 1.279091e-02

Joint ci ratio: 9.941102e-02	ci left: 1.215536e-02	ci right 1.343501e-02	k: 1534	n:120000
Cons ci ratio: 1.658992e-03	ci left: 9.781389e-01	ci right 9.797711e-01	k: 117476	n:120000
KS ci ratio: 9.941102e-02	ci left: 1.215536e-02	ci right 1.343501e-02	k: 1534	n:120000
ARPC1A   120000 perm   27 sec   (4411 perm/sec)   p_kst 1.278333e-02   p_cons 9.789667e-01   p_joint 1.278333e-02

Outputting figure to mutsig2_images.part000000000011/ARPC1A.4_1149_120000_0.012783_0.97897_0.012783.png
                gene_name: ARPC1A
               theta_stop: 0.099 
                    nperm: 120000 
                     p_ks: 0.013 
        ci_ks_bounds_left: 0.012 
       ci_ks_bounds_right: 0.013 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.013 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.013 

Current progress: 29 percent done.
ARPM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.087503e-02	ci left: 6.074897e-01	ci right 6.266420e-01	k: 6171	n:10000
Cons ci ratio: 8.664465e-02	ci left: 1.624881e-01	ci right 1.773047e-01	k: 1698	n:10000
KS ci ratio: 1.819289e-02	ci left: 8.151724e-01	ci right 8.302391e-01	k: 8228	n:10000
ARPM1   10000 perm   2 sec   (5756 perm/sec)   p_kst 8.228000e-01   p_cons 1.698000e-01   p_joint 6.171000e-01

Outputting figure to mutsig2_images.part000000000011/ARPM1.4_1127_10000_0.8228_0.1698_0.6171.png
                gene_name: ARPM1
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 32 percent done.
ARSH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.368076e-02	ci left: 2.124066e-01	ci right 2.287565e-01	k: 2205	n:10000
Cons ci ratio: 1.265846e-01	ci left: 8.193541e-02	ci right 9.310624e-02	k: 874	n:10000
KS ci ratio: 4.047690e-02	ci left: 4.740612e-01	ci right 4.937482e-01	k: 4839	n:10000
ARSH   10000 perm   2 sec   (5644 perm/sec)   p_kst 4.839000e-01   p_cons 8.740000e-02   p_joint 2.205000e-01

Joint ci ratio: 4.644855e-02	ci left: 2.564616e-01	ci right 2.687075e-01	k: 5251	n:20000
Cons ci ratio: 8.920376e-02	ci left: 8.410890e-02	ci right 9.201134e-02	k: 1760	n:20000
KS ci ratio: 2.901333e-02	ci left: 4.702065e-01	ci right 4.841002e-01	k: 9543	n:20000
ARSH   20000 perm   4 sec   (5067 perm/sec)   p_kst 4.771500e-01   p_cons 8.800000e-02   p_joint 2.625500e-01

Outputting figure to mutsig2_images.part000000000011/ARSH.4_1724_20000_0.47715_0.088_0.26255.png
                gene_name: ARSH
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.088 
      ci_cons_bounds_left: 0.084 
     ci_cons_bounds_right: 0.092 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 34 percent done.
ARSI
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.562761e-02	ci left: 8.560029e-01	ci right 8.695850e-01	k: 8629	n:10000
Cons ci ratio: 3.654068e-02	ci left: 5.251652e-01	ci right 5.448144e-01	k: 5350	n:10000
KS ci ratio: 2.044241e-02	ci left: 7.780316e-01	ci right 7.942014e-01	k: 7862	n:10000
ARSI   10000 perm   2 sec   (5985 perm/sec)   p_kst 7.862000e-01   p_cons 5.350000e-01   p_joint 8.629000e-01

Outputting figure to mutsig2_images.part000000000011/ARSI.4_1718_10000_0.7862_0.535_0.8629.png
                gene_name: ARSI
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 37 percent done.
ARID5B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.151493e-02	ci left: 7.601055e-01	ci right 7.767378e-01	k: 7685	n:10000
KS ci ratio: 1.564081e-02	ci left: 8.557989e-01	ci right 8.693892e-01	k: 8627	n:10000
ARID5B   10000 perm   2 sec   (5198 perm/sec)   p_kst 8.627000e-01   p_cons 7.685000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000011/ARID5B.3_3607_10000_0.8627_0.7685_1.png
                gene_name: ARID5B
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 39 percent done.
ARL6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.948304e-02	ci left: 1.537479e-01	ci right 1.682502e-01	k: 1609	n:10000
KS ci ratio: 3.387683e-02	ci left: 5.626335e-01	ci right 5.821243e-01	k: 5724	n:10000
ARL6   10000 perm   2 sec   (6345 perm/sec)   p_kst 5.724000e-01   p_cons 1.609000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000011/ARL6.3_589_10000_0.5724_0.1609_1.png
                gene_name: ARL6
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 42 percent done.
ARMC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.116124e-01	ci left: 1.036391e-01	ci right 1.159892e-01	k: 1097	n:10000
Cons ci ratio: 7.681810e-03	ci left: 9.592178e-01	ci right 9.667094e-01	k: 9631	n:10000
KS ci ratio: 1.991394e-01	ci left: 3.357607e-02	ci right 4.109654e-02	k: 372	n:10000
ARMC1   10000 perm   2 sec   (6334 perm/sec)   p_kst 3.720000e-02   p_cons 9.631000e-01   p_joint 1.097000e-01

Joint ci ratio: 1.106956e-01	ci left: 5.572506e-02	ci right 6.230387e-02	k: 1179	n:20000
Cons ci ratio: 5.409638e-03	ci left: 9.606526e-01	ci right 9.659116e-01	k: 19267	n:20000
KS ci ratio: 1.434327e-01	ci left: 3.341257e-02	ci right 3.862344e-02	k: 719	n:20000
ARMC1   20000 perm   4 sec   (5602 perm/sec)   p_kst 3.595000e-02   p_cons 9.633500e-01   p_joint 5.895000e-02

Joint ci ratio: 7.601052e-02	ci left: 7.832967e-02	ci right 8.455167e-02	k: 2442	n:30000
Cons ci ratio: 4.423381e-03	ci left: 9.610418e-01	ci right 9.653346e-01	k: 28897	n:30000
KS ci ratio: 1.169449e-01	ci left: 3.398512e-02	ci right 3.823866e-02	k: 1082	n:30000
ARMC1   30000 perm   6 sec   (5343 perm/sec)   p_kst 3.606667e-02   p_cons 9.632333e-01   p_joint 8.140000e-02

Joint ci ratio: 7.880816e-02	ci left: 5.594982e-02	ci right 6.056457e-02	k: 2329	n:40000
Cons ci ratio: 3.833543e-03	ci left: 9.612829e-01	ci right 9.649994e-01	k: 38527	n:40000
KS ci ratio: 1.016066e-01	ci left: 3.404932e-02	ci right 3.771846e-02	k: 1434	n:40000
ARMC1   40000 perm   8 sec   (5168 perm/sec)   p_kst 3.585000e-02   p_cons 9.631750e-01   p_joint 5.822500e-02

Joint ci ratio: 7.738016e-02	ci left: 4.692777e-02	ci right 5.072483e-02	k: 2440	n:50000
Cons ci ratio: 3.424518e-03	ci left: 9.615739e-01	ci right 9.648920e-01	k: 48163	n:50000
KS ci ratio: 9.151010e-02	ci left: 3.377775e-02	ci right 3.703648e-02	k: 1769	n:50000
ARMC1   50000 perm   10 sec   (5028 perm/sec)   p_kst 3.538000e-02   p_cons 9.632600e-01   p_joint 4.880000e-02

Outputting figure to mutsig2_images.part000000000011/ARMC1.3_873_50000_0.03538_0.96326_0.0488.png
                gene_name: ARMC1
               theta_stop: 0.092 
                    nperm: 50000 
                     p_ks: 0.035 
        ci_ks_bounds_left: 0.034 
       ci_ks_bounds_right: 0.037 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.049 
     ci_joint_bounds_left: 0.047 
    ci_joint_bounds_right: 0.051 

Current progress: 45 percent done.
ARMC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.190759e-02	ci left: 7.535277e-01	ci right 7.703194e-01	k: 7620	n:10000
Cons ci ratio: 4.872833e-02	ci left: 3.832104e-01	ci right 4.024520e-01	k: 3928	n:10000
KS ci ratio: 2.459607e-02	ci left: 7.085635e-01	ci right 7.263097e-01	k: 7175	n:10000
ARMC2   10000 perm   2 sec   (5591 perm/sec)   p_kst 7.175000e-01   p_cons 3.928000e-01   p_joint 7.620000e-01

Outputting figure to mutsig2_images.part000000000011/ARMC2.3_2672_10000_0.7175_0.3928_0.762.png
                gene_name: ARMC2
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 47 percent done.
ARMCX5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.795385e-02	ci left: 3.047104e-01	ci right 3.229982e-01	k: 3138	n:10000
Cons ci ratio: 2.290325e-02	ci left: 7.368421e-01	ci right 7.540147e-01	k: 7455	n:10000
KS ci ratio: 7.575520e-02	ci left: 2.031366e-01	ci right 2.192320e-01	k: 2111	n:10000
ARMCX5   10000 perm   2 sec   (6044 perm/sec)   p_kst 2.111000e-01   p_cons 7.455000e-01   p_joint 3.138000e-01

Outputting figure to mutsig2_images.part000000000011/ARMCX5.3_1681_10000_0.2111_0.7455_0.3138.png
                gene_name: ARMCX5
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 50 percent done.
ARSF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.337476e-01	ci left: 7.378639e-02	ci right 8.446032e-02	k: 790	n:10000
Cons ci ratio: 1.442098e-01	ci left: 6.381856e-02	ci right 7.383439e-02	k: 687	n:10000
KS ci ratio: 8.435169e-02	ci left: 1.700559e-01	ci right 1.851324e-01	k: 1775	n:10000
ARSF   10000 perm   2 sec   (5890 perm/sec)   p_kst 1.775000e-01   p_cons 6.870000e-02   p_joint 7.900000e-02

Joint ci ratio: 9.207096e-02	ci left: 7.926130e-02	ci right 8.696041e-02	k: 1661	n:20000
Cons ci ratio: 1.040180e-01	ci left: 6.284124e-02	ci right 6.978550e-02	k: 1325	n:20000
KS ci ratio: 6.023501e-02	ci left: 1.694601e-01	ci right 1.800346e-01	k: 3494	n:20000
ARSF   20000 perm   4 sec   (5258 perm/sec)   p_kst 1.747000e-01   p_cons 6.625000e-02   p_joint 8.305000e-02

Joint ci ratio: 7.129918e-02	ci left: 8.826043e-02	ci right 9.481893e-02	k: 2745	n:30000
Cons ci ratio: 8.595369e-02	ci left: 6.203992e-02	ci right 6.764471e-02	k: 1944	n:30000
KS ci ratio: 4.911665e-02	ci left: 1.708143e-01	ci right 1.794487e-01	k: 5253	n:30000
ARSF   30000 perm   6 sec   (4990 perm/sec)   p_kst 1.751000e-01   p_cons 6.480000e-02   p_joint 9.150000e-02

Outputting figure to mutsig2_images.part000000000011/ARSF.3_1813_30000_0.1751_0.0648_0.0915.png
                gene_name: ARSF
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.065 
      ci_cons_bounds_left: 0.062 
     ci_cons_bounds_right: 0.068 
                  p_joint: 0.091 
     ci_joint_bounds_left: 0.088 
    ci_joint_bounds_right: 0.095 

Current progress: 53 percent done.
ART3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.455374e-02	ci left: 2.606239e-01	ci right 2.781107e-01	k: 2693	n:10000
Cons ci ratio: 5.559135e-02	ci left: 3.227699e-01	ci right 3.413280e-01	k: 3320	n:10000
KS ci ratio: 6.204299e-02	ci left: 2.763642e-01	ci right 2.941611e-01	k: 2852	n:10000
ART3   10000 perm   2 sec   (6199 perm/sec)   p_kst 2.852000e-01   p_cons 3.320000e-01   p_joint 2.693000e-01

Outputting figure to mutsig2_images.part000000000011/ART3.3_1214_10000_0.2852_0.332_0.2693.png
                gene_name: ART3
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 55 percent done.
AS3MT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.164346e-01	ci left: 9.584256e-02	ci right 1.077905e-01	k: 1017	n:10000
Cons ci ratio: 1.736201e-01	ci left: 4.427577e-02	ci right 5.278970e-02	k: 484	n:10000
KS ci ratio: 6.077436e-02	ci left: 2.847843e-01	ci right 3.027359e-01	k: 2937	n:10000
AS3MT   10000 perm   2 sec   (6291 perm/sec)   p_kst 2.937000e-01   p_cons 4.840000e-02   p_joint 1.017000e-01

Joint ci ratio: 8.615353e-02	ci left: 8.974462e-02	ci right 9.787391e-02	k: 1875	n:20000
Cons ci ratio: 1.252327e-01	ci left: 4.376838e-02	ci right 4.966431e-02	k: 933	n:20000
KS ci ratio: 4.272178e-02	ci left: 2.898772e-01	ci right 3.025821e-01	k: 5924	n:20000
AS3MT   20000 perm   4 sec   (5568 perm/sec)   p_kst 2.962000e-01   p_cons 4.665000e-02   p_joint 9.375000e-02

Joint ci ratio: 8.631013e-02	ci left: 6.155000e-02	ci right 6.713474e-02	k: 1929	n:30000
Cons ci ratio: 1.030657e-01	ci left: 4.362438e-02	ci right 4.839737e-02	k: 1379	n:30000
KS ci ratio: 3.482238e-02	ci left: 2.917662e-01	ci right 3.021398e-01	k: 8908	n:30000
AS3MT   30000 perm   6 sec   (5270 perm/sec)   p_kst 2.969333e-01   p_cons 4.596667e-02   p_joint 6.430000e-02

Joint ci ratio: 6.944727e-02	ci left: 7.120719e-02	ci right 7.635489e-02	k: 2950	n:40000
Cons ci ratio: 8.995183e-02	ci left: 4.328259e-02	ci right 4.738375e-02	k: 1812	n:40000
KS ci ratio: 3.007184e-02	ci left: 2.936445e-01	ci right 3.026348e-01	k: 11925	n:40000
AS3MT   40000 perm   8 sec   (5071 perm/sec)   p_kst 2.981250e-01   p_cons 4.530000e-02   p_joint 7.375000e-02

Outputting figure to mutsig2_images.part000000000011/AS3MT.3_1172_40000_0.29812_0.0453_0.07375.png
                gene_name: AS3MT
               theta_stop: 0.090 
                    nperm: 40000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.045 
      ci_cons_bounds_left: 0.043 
     ci_cons_bounds_right: 0.047 
                  p_joint: 0.074 
     ci_joint_bounds_left: 0.071 
    ci_joint_bounds_right: 0.076 

Current progress: 58 percent done.
ARIH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.103114e-02	ci left: 3.615207e-01	ci right 3.805545e-01	k: 3710	n:10000
Cons ci ratio: 2.683977e-02	ci left: 6.715616e-01	ci right 6.899330e-01	k: 6808	n:10000
KS ci ratio: 5.863342e-02	ci left: 2.997517e-01	ci right 3.179597e-01	k: 3088	n:10000
ARIH2   10000 perm   2 sec   (6150 perm/sec)   p_kst 3.088000e-01   p_cons 6.808000e-01   p_joint 3.710000e-01

Outputting figure to mutsig2_images.part000000000011/ARIH2.2_1538_10000_0.3088_0.6808_0.371.png
                gene_name: ARIH2
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 61 percent done.
ARL13A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.383424e-02	ci left: 3.370699e-01	ci right 3.558196e-01	k: 3464	n:10000
Cons ci ratio: 5.280433e-02	ci left: 3.458134e-01	ci right 3.646710e-01	k: 3552	n:10000
KS ci ratio: 7.812958e-02	ci left: 1.931834e-01	ci right 2.089911e-01	k: 2010	n:10000
ARL13A   10000 perm   2 sec   (6570 perm/sec)   p_kst 2.010000e-01   p_cons 3.552000e-01   p_joint 3.464000e-01

Outputting figure to mutsig2_images.part000000000011/ARL13A.2_932_10000_0.201_0.3552_0.3464.png
                gene_name: ARL13A
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 63 percent done.
ARL13B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.435137e-02	ci left: 2.093488e-01	ci right 2.256161e-01	k: 2174	n:10000
Cons ci ratio: 8.397822e-02	ci left: 1.713341e-01	ci right 1.864535e-01	k: 1788	n:10000
KS ci ratio: 1.690887e-01	ci left: 4.667345e-02	ci right 5.539046e-02	k: 509	n:10000
ARL13B   10000 perm   2 sec   (6440 perm/sec)   p_kst 5.090000e-02   p_cons 1.788000e-01   p_joint 2.174000e-01

Joint ci ratio: 1.652175e-02	ci left: 7.316955e-01	ci right 7.439353e-01	k: 14757	n:20000
Cons ci ratio: 5.936220e-02	ci left: 1.736596e-01	ci right 1.843339e-01	k: 3579	n:20000
KS ci ratio: 1.184089e-01	ci left: 4.886604e-02	ci right 5.506504e-02	k: 1038	n:20000
ARL13B   20000 perm   3 sec   (5726 perm/sec)   p_kst 5.190000e-02   p_cons 1.789500e-01   p_joint 7.378500e-01

Joint ci ratio: 6.814819e-02	ci left: 9.593808e-02	ci right 1.027397e-01	k: 2979	n:30000
Cons ci ratio: 4.839792e-02	ci left: 1.750728e-01	ci right 1.837894e-01	k: 5382	n:30000
KS ci ratio: 9.595276e-02	ci left: 5.016582e-02	ci right 5.525457e-02	k: 1580	n:30000
ARL13B   30000 perm   6 sec   (5437 perm/sec)   p_kst 5.266667e-02   p_cons 1.794000e-01   p_joint 9.930000e-02

Outputting figure to mutsig2_images.part000000000011/ARL13B.2_1327_30000_0.052667_0.1794_0.0993.png
                gene_name: ARL13B
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.053 
        ci_ks_bounds_left: 0.050 
       ci_ks_bounds_right: 0.055 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.099 
     ci_joint_bounds_left: 0.096 
    ci_joint_bounds_right: 0.10 

Current progress: 66 percent done.
ARL2BP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.202833e-02	ci left: 7.515043e-01	ci right 7.683440e-01	k: 7600	n:10000
KS ci ratio: 4.056613e-02	ci left: 4.729622e-01	ci right 4.926478e-01	k: 4828	n:10000
ARL2BP   10000 perm   2 sec   (6482 perm/sec)   p_kst 4.828000e-01   p_cons 7.600000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000011/ARL2BP.2_516_10000_0.4828_0.76_1.png
                gene_name: ARL2BP
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
ARMC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.895970e-02	ci left: 4.931507e-01	ci right 5.128476e-01	k: 5030	n:10000
Cons ci ratio: 1.963746e-02	ci left: 7.914146e-01	ci right 8.072106e-01	k: 7994	n:10000
KS ci ratio: 1.191234e-01	ci left: 9.185115e-02	ci right 1.035844e-01	k: 976	n:10000
ARMC3   10000 perm   2 sec   (5848 perm/sec)   p_kst 9.760000e-02   p_cons 7.994000e-01   p_joint 5.030000e-01

Joint ci ratio: 3.297799e-02	ci left: 4.071118e-01	ci right 4.208132e-01	k: 8279	n:20000
Cons ci ratio: 1.407574e-02	ci left: 7.893374e-01	ci right 8.005767e-01	k: 15900	n:20000
KS ci ratio: 8.368985e-02	ci left: 9.469809e-02	ci right 1.030190e-01	k: 1976	n:20000
ARMC3   20000 perm   4 sec   (5215 perm/sec)   p_kst 9.880000e-02   p_cons 7.950000e-01   p_joint 4.139500e-01

Outputting figure to mutsig2_images.part000000000011/ARMC3.2_2691_20000_0.0988_0.795_0.41395.png
                gene_name: ARMC3
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.099 
        ci_ks_bounds_left: 0.095 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.42 

Current progress: 71 percent done.
ARMCX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.261899e-01	ci left: 8.242097e-02	ci right 9.362038e-02	k: 879	n:10000
Cons ci ratio: 1.793285e-01	ci left: 4.149837e-02	ci right 4.976893e-02	k: 455	n:10000
KS ci ratio: 3.969896e-02	ci left: 4.837540e-01	ci right 5.034497e-01	k: 4936	n:10000
ARMCX1   10000 perm   3 sec   (3861 perm/sec)   p_kst 4.936000e-01   p_cons 4.550000e-02   p_joint 8.790000e-02

Joint ci ratio: 1.017755e-01	ci left: 6.552521e-02	ci right 7.260070e-02	k: 1380	n:20000
Cons ci ratio: 1.263723e-01	ci left: 4.299245e-02	ci right 4.884048e-02	k: 917	n:20000
KS ci ratio: 2.824252e-02	ci left: 4.836485e-01	ci right 4.975542e-01	k: 9812	n:20000
ARMCX1   20000 perm   5 sec   (3814 perm/sec)   p_kst 4.906000e-01   p_cons 4.585000e-02   p_joint 6.900000e-02

Joint ci ratio: 2.395022e-02	ci left: 4.660374e-01	ci right 4.773680e-01	k: 14151	n:30000
Cons ci ratio: 6.382242e-02	ci left: 1.081237e-01	ci right 1.152850e-01	k: 3350	n:30000
KS ci ratio: 2.304821e-02	ci left: 4.851941e-01	ci right 4.965410e-01	k: 14726	n:30000
ARMCX1   30000 perm   7 sec   (4084 perm/sec)   p_kst 4.908667e-01   p_cons 1.116667e-01   p_joint 4.717000e-01

Outputting figure to mutsig2_images.part000000000011/ARMCX1.2_1366_30000_0.49087_0.11167_0.4717.png
                gene_name: ARMCX1
               theta_stop: 0.064 
                    nperm: 30000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.48 

Current progress: 74 percent done.
ARNTL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.367563e-03	ci left: 9.523170e-01	ci right 9.604144e-01	k: 9565	n:10000
Cons ci ratio: 4.539235e-02	ci left: 4.173773e-01	ci right 4.368652e-01	k: 4271	n:10000
KS ci ratio: 3.750623e-02	ci left: 5.121545e-01	ci right 5.318327e-01	k: 5220	n:10000
ARNTL   10000 perm   2 sec   (5781 perm/sec)   p_kst 5.220000e-01   p_cons 4.271000e-01   p_joint 9.565000e-01

Outputting figure to mutsig2_images.part000000000011/ARNTL.2_1957_10000_0.522_0.4271_0.9565.png
                gene_name: ARNTL
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 76 percent done.
ARR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.527287e-01	ci left: 5.706232e-02	ci right 6.659491e-02	k: 617	n:10000
Cons ci ratio: 3.805205e-01	ci left: 8.505237e-03	ci right 1.258745e-02	k: 104	n:10000
KS ci ratio: 1.987588e-02	ci left: 7.874592e-01	ci right 8.033683e-01	k: 7955	n:10000
ARR3   10000 perm   2 sec   (6482 perm/sec)   p_kst 7.955000e-01   p_cons 1.040000e-02   p_joint 6.170000e-02

Joint ci ratio: 1.696499e-01	ci left: 2.379073e-02	ci right 2.824852e-02	k: 519	n:20000
Cons ci ratio: 2.710386e-01	ci left: 8.947269e-03	ci right 1.179778e-02	k: 206	n:20000
KS ci ratio: 1.410380e-02	ci left: 7.886809e-01	ci right 7.999334e-01	k: 15887	n:20000
ARR3   20000 perm   4 sec   (5651 perm/sec)   p_kst 7.943500e-01   p_cons 1.030000e-02   p_joint 2.595000e-02

Joint ci ratio: 1.396263e-01	ci left: 2.380998e-02	ci right 2.741602e-02	k: 767	n:30000
Cons ci ratio: 2.222095e-01	ci left: 9.125451e-03	ci right 1.143753e-02	k: 307	n:30000
KS ci ratio: 1.154090e-02	ci left: 7.890088e-01	ci right 7.982009e-01	k: 23809	n:30000
ARR3   30000 perm   6 sec   (5344 perm/sec)   p_kst 7.936333e-01   p_cons 1.023333e-02   p_joint 2.556667e-02

Joint ci ratio: 3.646738e-02	ci left: 2.200212e-01	ci right 2.282189e-01	k: 8964	n:40000
Cons ci ratio: 1.398065e-01	ci left: 1.792597e-02	ci right 2.064446e-02	k: 770	n:40000
KS ci ratio: 1.002544e-02	ci left: 7.886182e-01	ci right 7.965893e-01	k: 31705	n:40000
ARR3   40000 perm   8 sec   (5163 perm/sec)   p_kst 7.926250e-01   p_cons 1.925000e-02   p_joint 2.241000e-01

Joint ci ratio: 4.751822e-02	ci left: 1.169460e-01	ci right 1.226582e-01	k: 5989	n:50000
Cons ci ratio: 1.274094e-01	ci left: 1.739502e-02	ci right 1.978134e-02	k: 928	n:50000
KS ci ratio: 9.023851e-03	ci left: 7.869464e-01	ci right 7.940998e-01	k: 39527	n:50000
ARR3   50000 perm   10 sec   (4976 perm/sec)   p_kst 7.905400e-01   p_cons 1.856000e-02   p_joint 1.197800e-01

Joint ci ratio: 5.628941e-02	ci left: 7.267442e-02	ci right 7.690015e-02	k: 4486	n:60000
Cons ci ratio: 1.161388e-01	ci left: 1.755012e-02	ci right 1.973012e-02	k: 1117	n:60000
KS ci ratio: 8.227820e-03	ci left: 7.876572e-01	ci right 7.941813e-01	k: 47456	n:60000
ARR3   60000 perm   12 sec   (4864 perm/sec)   p_kst 7.909333e-01   p_cons 1.861667e-02   p_joint 7.476667e-02

Joint ci ratio: 5.285325e-02	ci left: 7.092828e-02	ci right 7.479293e-02	k: 5099	n:70000
Cons ci ratio: 1.074119e-01	ci left: 1.766761e-02	ci right 1.968685e-02	k: 1306	n:70000
KS ci ratio: 7.613308e-03	ci left: 7.880837e-01	ci right 7.941207e-01	k: 55378	n:70000
ARR3   70000 perm   15 sec   (4761 perm/sec)   p_kst 7.911143e-01   p_cons 1.865714e-02   p_joint 7.284286e-02

Joint ci ratio: 4.923761e-02	ci left: 7.160208e-02	ci right 7.522893e-02	k: 5872	n:80000
Cons ci ratio: 1.001240e-01	ci left: 1.785788e-02	ci right 1.975224e-02	k: 1503	n:80000
KS ci ratio: 7.145059e-03	ci left: 7.871859e-01	ci right 7.928430e-01	k: 63202	n:80000
ARR3   80000 perm   17 sec   (4665 perm/sec)   p_kst 7.900250e-01   p_cons 1.878750e-02   p_joint 7.340000e-02

Joint ci ratio: 4.659747e-02	ci left: 7.119878e-02	ci right 7.460658e-02	k: 6560	n:90000
Cons ci ratio: 9.386221e-02	ci left: 1.811803e-02	ci right 1.991316e-02	k: 1710	n:90000
KS ci ratio: 6.740089e-03	ci left: 7.871678e-01	ci right 7.925024e-01	k: 71086	n:90000
ARR3   90000 perm   20 sec   (4573 perm/sec)   p_kst 7.898444e-01   p_cons 1.900000e-02   p_joint 7.288889e-02

Outputting figure to mutsig2_images.part000000000011/ARR3.2_1231_90000_0.78984_0.019_0.072889.png
                gene_name: ARR3
               theta_stop: 0.094 
                    nperm: 90000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.019 
      ci_cons_bounds_left: 0.018 
     ci_cons_bounds_right: 0.020 
                  p_joint: 0.073 
     ci_joint_bounds_left: 0.071 
    ci_joint_bounds_right: 0.075 

Current progress: 79 percent done.
ARRB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.614789e-03	ci left: 9.689983e-01	ci right 9.755227e-01	k: 9724	n:10000
Cons ci ratio: 2.032079e-02	ci left: 7.800585e-01	ci right 7.961733e-01	k: 7882	n:10000
KS ci ratio: 1.212039e-02	ci left: 9.070994e-01	ci right 9.182588e-01	k: 9128	n:10000
ARRB1   10000 perm   2 sec   (6399 perm/sec)   p_kst 9.128000e-01   p_cons 7.882000e-01   p_joint 9.724000e-01

Outputting figure to mutsig2_images.part000000000011/ARRB1.2_1321_10000_0.9128_0.7882_0.9724.png
                gene_name: ARRB1
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 82 percent done.
ARRDC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.133093e-03	ci left: 9.868662e-01	ci right 9.910417e-01	k: 9891	n:10000
Cons ci ratio: 5.202967e-02	ci left: 3.525721e-01	ci right 3.715083e-01	k: 3620	n:10000
KS ci ratio: 1.096501e-02	ci left: 9.222420e-01	ci right 9.325074e-01	k: 9275	n:10000
ARRDC3   10000 perm   2 sec   (6145 perm/sec)   p_kst 9.275000e-01   p_cons 3.620000e-01   p_joint 9.891000e-01

Outputting figure to mutsig2_images.part000000000011/ARRDC3.2_1277_10000_0.9275_0.362_0.9891.png
                gene_name: ARRDC3
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 84 percent done.
ARRDC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.935905e-02	ci left: 4.880521e-01	ci right 5.077491e-01	k: 4979	n:10000
KS ci ratio: 2.363978e-02	ci left: 7.245152e-01	ci right 7.419487e-01	k: 7333	n:10000
ARRDC5   10000 perm   2 sec   (6525 perm/sec)   p_kst 7.333000e-01   p_cons 4.979000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000011/ARRDC5.2_1041_10000_0.7333_0.4979_1.png
                gene_name: ARRDC5
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
ARSA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.273055e-02	ci left: 1.445251e-01	ci right 1.586785e-01	k: 1515	n:10000
Cons ci ratio: 8.265884e-02	ci left: 1.759564e-01	ci right 1.912283e-01	k: 1835	n:10000
KS ci ratio: 1.030980e-01	ci left: 1.197510e-01	ci right 1.328675e-01	k: 1262	n:10000
ARSA   10000 perm   2 sec   (6318 perm/sec)   p_kst 1.262000e-01   p_cons 1.835000e-01   p_joint 1.515000e-01

Joint ci ratio: 7.432380e-02	ci left: 1.175435e-01	ci right 1.266667e-01	k: 2441	n:20000
Cons ci ratio: 5.769059e-02	ci left: 1.821114e-01	ci right 1.929796e-01	k: 3750	n:20000
KS ci ratio: 7.197603e-02	ci left: 1.244821e-01	ci right 1.338260e-01	k: 2582	n:20000
ARSA   20000 perm   4 sec   (5585 perm/sec)   p_kst 1.291000e-01   p_cons 1.875000e-01   p_joint 1.220500e-01

Outputting figure to mutsig2_images.part000000000011/ARSA.2_1556_20000_0.1291_0.1875_0.12205.png
                gene_name: ARSA
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 89 percent done.
ARSE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.211153e-02	ci left: 1.779240e-01	ci right 1.932596e-01	k: 1855	n:10000
Cons ci ratio: 1.853727e-01	ci left: 3.882106e-02	ci right 4.684801e-02	k: 427	n:10000
KS ci ratio: 4.311172e-02	ci left: 4.427095e-01	ci right 4.623181e-01	k: 4525	n:10000
ARSE   10000 perm   2 sec   (6404 perm/sec)   p_kst 4.525000e-01   p_cons 4.270000e-02   p_joint 1.855000e-01

Joint ci ratio: 4.671387e-02	ci left: 2.542785e-01	ci right 2.664913e-01	k: 5207	n:20000
Cons ci ratio: 1.298967e-01	ci left: 4.071458e-02	ci right 4.641908e-02	k: 870	n:20000
KS ci ratio: 3.093089e-02	ci left: 4.384454e-01	ci right 4.522705e-01	k: 8907	n:20000
ARSE   20000 perm   4 sec   (5656 perm/sec)   p_kst 4.453500e-01   p_cons 4.350000e-02   p_joint 2.603500e-01

Joint ci ratio: 5.097393e-02	ci left: 1.604528e-01	ci right 1.688789e-01	k: 4939	n:30000
Cons ci ratio: 1.071591e-01	ci left: 4.040740e-02	ci right 4.501502e-02	k: 1280	n:30000
KS ci ratio: 2.543797e-02	ci left: 4.361697e-01	ci right 4.474415e-01	k: 13254	n:30000
ARSE   30000 perm   6 sec   (5379 perm/sec)   p_kst 4.418000e-01   p_cons 4.266667e-02   p_joint 1.646333e-01

Joint ci ratio: 4.718082e-02	ci left: 1.436916e-01	ci right 1.506597e-01	k: 5886	n:40000
Cons ci ratio: 9.378214e-02	ci left: 3.988401e-02	ci right 4.383285e-02	k: 1673	n:40000
KS ci ratio: 2.202578e-02	ci left: 4.370251e-01	ci right 4.467833e-01	k: 17676	n:40000
ARSE   40000 perm   8 sec   (5187 perm/sec)   p_kst 4.419000e-01   p_cons 4.182500e-02   p_joint 1.471500e-01

Outputting figure to mutsig2_images.part000000000011/ARSE.2_1810_40000_0.4419_0.041825_0.14715.png
                gene_name: ARSE
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.042 
      ci_cons_bounds_left: 0.040 
     ci_cons_bounds_right: 0.044 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 92 percent done.
ARSG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.906185e-02	ci left: 2.966780e-01	ci right 3.148353e-01	k: 3057	n:10000
KS ci ratio: 2.047888e-02	ci left: 7.774236e-01	ci right 7.936097e-01	k: 7856	n:10000
ARSG   10000 perm   2 sec   (6126 perm/sec)   p_kst 7.856000e-01   p_cons 3.057000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000011/ARSG.2_1622_10000_0.7856_0.3057_1.png
                gene_name: ARSG
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
ART5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.784775e-03	ci left: 9.675208e-01	ci right 9.742012e-01	k: 9710	n:10000
Cons ci ratio: 4.336488e-02	ci left: 4.398160e-01	ci right 4.594134e-01	k: 4496	n:10000
KS ci ratio: 4.531823e-02	ci left: 4.181748e-01	ci right 4.376672e-01	k: 4279	n:10000
ART5   10000 perm   2 sec   (6496 perm/sec)   p_kst 4.279000e-01   p_cons 4.496000e-01   p_joint 9.710000e-01

Outputting figure to mutsig2_images.part000000000011/ART5.2_892_10000_0.4279_0.4496_0.971.png
                gene_name: ART5
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.97 

Current progress: 97 percent done.
ARVCF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.529504e-02	ci left: 6.969615e-01	ci right 7.149184e-01	k: 7060	n:10000
KS ci ratio: 1.119938e-02	ci left: 9.192503e-01	ci right 9.297008e-01	k: 9246	n:10000
ARVCF   10000 perm   2 sec   (5556 perm/sec)   p_kst 9.246000e-01   p_cons 7.060000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000011/ARVCF.2_2957_10000_0.9246_0.706_1.png
                gene_name: ARVCF
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000011
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 11 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1420>
Subject: Job 8003842: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1420>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000012> was used as the working directory.
Started at Sun Nov 11 15:03:33 2012
Results reported at Sun Nov 11 17:52:25 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000012.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000012.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 12  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000012.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  11129.63 sec.
    Max Memory :      4803 MB
    Max Swap   :      7157 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
12
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 12
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 12: processing genes 996 - 1086
Calculating significance of each gene.
Using projection method.
996	ASAH1	1
997	ASAH2	2.951250e-03
998	ASAM	6.973212e-01
999	ASAP1	5.380005e-01
1000/18094 1000	ASAP2	8.484580e-01
1001	ASAP3	8.475958e-01
1002	ASB1	5.273900e-01
1003	ASB10	7.031813e-01
1004	ASB11	2.247156e-01
1005	ASB12	1
1006	ASB13	1
1007	ASB14	1
1008	ASB15	9.101238e-01
1009	ASB16	5.627843e-01
1010	ASB17	7.188000e-04
1011	ASB18	1.277696e-01
1012	ASB2	3.050039e-01
1013	ASB3	8.818194e-01
1014	ASB4	2.230863e-02
1015	ASB5	5.522663e-06
1016	ASB6	6.560888e-01
1017	ASB7	5.897593e-02
1018	ASB8	4.775677e-01
1019	ASB9	3.642171e-02
1020	ASCC1	7.568795e-01
1021	ASCC2	1
1022	ASCC3	9.072325e-01
1023	ASCL1	2.530154e-01
1024	ASCL3	2.779356e-01
1025	ASCL4	1.619925e-05
1026	ASF1A	4.821571e-01
1027	ASF1B	1
1028	ASGR1	6.440234e-01
1029	ASGR2	1
1030	ASH1L	9.972366e-01
1031	ASH2L	2.583151e-01
1032	ASIP	1
1033	ASL	9.315451e-02
1034	ASMT	5.769088e-01
1035	ASMTL	9.283683e-01
1036	ASNA1	4.769150e-02
1037	ASNS	2.327002e-01
1038	ASNSD1	2.566795e-01
1039	ASPA	1
1040	ASPDH	4.893309e-01
1041	ASPG	7.185522e-01
1042	ASPH	9.766421e-01
1043	ASPHD1	1
1044	ASPHD2	4.159882e-01
1045	ASPM	1
1046	ASPN	1
1047	ASPRV1	4.847594e-01
1048	ASPSCR1	8.102332e-01
1049	ASRGL1	1
1050	ASS1	1
1051	ASTE1	5.729906e-01
1052	ASTL	4.776349e-01
1053	ASTN1	9.046999e-01
1054	ASTN2	4.543544e-03
1055	ASXL1	9.754296e-01
1056	ASXL2	6.914837e-01
1057	ASXL3	1
1058	ASZ1	1
1059	ATAD1	7.760336e-01
1060	ATAD2	1.397219e-01
1061	ATAD2B	7.677579e-01
1062	ATAD3A	5.244749e-01
1063	ATAD3B	8.333856e-01
1064	ATAD3C	1
1065	ATAD5	9.121846e-01
1066	ATCAY	6.841889e-01
1067	ATE1	7.251445e-01
1068	ATF1	1
1069	ATF2	3.224343e-01
1070	ATF3	4.006118e-01
1071	ATF4	2.591126e-01
1072	ATF5	1
1073	ATF6	6.563793e-01
1074	ATF6B	6.957426e-01
1075	ATF7	1
1076	ATF7IP	9.661584e-03
1077	ATF7IP2	1
1078	ATG10	4.764094e-01
1079	ATG12	1.606552e-01
1080	ATG16L1	1
1081	ATG16L2	2.808637e-01
1082	ATG2A	6.785733e-01
1083	ATG2B	7.768097e-02
1084	ATG3	2.709692e-01
1085	ATG4A	1
1086	ATG4B	1
Done

Running MutSig 2:
Scatter job 12: processing genes 996 - 1086
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ASTN2
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside exons of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.173349e-01	ci left: 9.447929e-02	ci right 1.063546e-01	k: 1003	n:10000
Cons ci ratio: 4.488595e-02	ci left: 4.228604e-01	ci right 4.423788e-01	k: 4326	n:10000
KS ci ratio: 1.671973e-01	ci left: 4.772935e-02	ci right 5.653387e-02	k: 520	n:10000
ASTN2   10000 perm   3 sec   (3650 perm/sec)   p_kst 5.200000e-02   p_cons 4.326000e-01   p_joint 1.003000e-01

Joint ci ratio: 8.255917e-02	ci left: 9.710247e-02	ci right 1.055138e-01	k: 2025	n:20000
Cons ci ratio: 3.167741e-02	ci left: 4.267169e-01	ci right 4.405024e-01	k: 8672	n:20000
KS ci ratio: 1.164133e-01	ci left: 5.051865e-02	ci right 5.681191e-02	k: 1072	n:20000
ASTN2   20000 perm   10 sec   (2077 perm/sec)   p_kst 5.360000e-02   p_cons 4.336000e-01   p_joint 1.012500e-01

Joint ci ratio: 6.721301e-02	ci left: 9.840026e-02	ci right 1.052771e-01	k: 3054	n:30000
Cons ci ratio: 2.607697e-02	ci left: 4.239888e-01	ci right 4.352248e-01	k: 12888	n:30000
KS ci ratio: 9.528656e-02	ci left: 5.084996e-02	ci right 5.597030e-02	k: 1601	n:30000
ASTN2   30000 perm   13 sec   (2327 perm/sec)   p_kst 5.336667e-02   p_cons 4.296000e-01   p_joint 1.018000e-01

Outputting figure to mutsig2_images.part000000000012/ASTN2.17_4187_30000_0.053367_0.4296_0.1018.png
                gene_name: ASTN2
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.053 
        ci_ks_bounds_left: 0.051 
       ci_ks_bounds_right: 0.056 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.098 
    ci_joint_bounds_right: 0.11 

Current progress: 2 percent done.
ASPM
Processing conservation and coverage...
94% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.283085e-02	ci left: 7.380550e-01	ci right 7.552011e-01	k: 7467	n:10000
Cons ci ratio: 2.763342e-02	ci left: 6.586720e-01	ci right 6.772301e-01	k: 6680	n:10000
KS ci ratio: 3.506812e-02	ci left: 5.455956e-01	ci right 5.651722e-01	k: 5554	n:10000
ASPM   10000 perm   4 sec   (2528 perm/sec)   p_kst 5.554000e-01   p_cons 6.680000e-01   p_joint 7.467000e-01

Outputting figure to mutsig2_images.part000000000012/ASPM.16_10546_10000_0.5554_0.668_0.7467.png
                gene_name: ASPM
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 4 percent done.
ATG2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.985870e-01	ci left: 3.376644e-02	ci right 4.130605e-02	k: 374	n:10000
Cons ci ratio: 8.658327e-02	ci left: 1.626846e-01	ci right 1.775081e-01	k: 1700	n:10000
KS ci ratio: 2.105447e-01	ci left: 2.996481e-02	ci right 3.711029e-02	k: 334	n:10000
ATG2B   10000 perm   3 sec   (3342 perm/sec)   p_kst 3.340000e-02   p_cons 1.700000e-01   p_joint 3.740000e-02

Joint ci ratio: 1.102495e-01	ci left: 5.616335e-02	ci right 6.276545e-02	k: 1188	n:20000
Cons ci ratio: 6.070916e-02	ci left: 1.672373e-01	ci right 1.777580e-01	k: 3449	n:20000
KS ci ratio: 1.515943e-01	ci left: 2.989297e-02	ci right 3.484421e-02	k: 646	n:20000
ATG2B   20000 perm   6 sec   (3078 perm/sec)   p_kst 3.230000e-02   p_cons 1.724500e-01   p_joint 5.940000e-02

Joint ci ratio: 1.008634e-01	ci left: 4.551066e-02	ci right 5.037737e-02	k: 1437	n:30000
Cons ci ratio: 4.977843e-02	ci left: 1.670188e-01	ci right 1.755783e-01	k: 5138	n:30000
KS ci ratio: 1.244748e-01	ci left: 3.000484e-02	ci right 3.401980e-02	k: 959	n:30000
ATG2B   30000 perm   10 sec   (2984 perm/sec)   p_kst 3.196667e-02   p_cons 1.712667e-01   p_joint 4.790000e-02

Joint ci ratio: 9.623840e-02	ci left: 3.790521e-02	ci right 4.176196e-02	k: 1592	n:40000
Cons ci ratio: 4.304885e-02	ci left: 1.679909e-01	ci right 1.754068e-01	k: 6867	n:40000
KS ci ratio: 1.072803e-01	ci left: 3.056460e-02	ci right 3.405373e-02	k: 1291	n:40000
ATG2B   40000 perm   14 sec   (2921 perm/sec)   p_kst 3.227500e-02   p_cons 1.716750e-01   p_joint 3.980000e-02

Joint ci ratio: 9.454223e-02	ci left: 3.166633e-02	ci right 3.482817e-02	k: 1661	n:50000
Cons ci ratio: 3.848788e-02	ci left: 1.685028e-01	ci right 1.751353e-01	k: 8590	n:50000
KS ci ratio: 9.638724e-02	ci left: 3.047454e-02	ci right 3.358011e-02	k: 1600	n:50000
ATG2B   50000 perm   17 sec   (2865 perm/sec)   p_kst 3.200000e-02   p_cons 1.718000e-01   p_joint 3.322000e-02

Outputting figure to mutsig2_images.part000000000012/ATG2B.14_6405_50000_0.032_0.1718_0.03322.png
                gene_name: ATG2B
               theta_stop: 0.096 
                    nperm: 50000 
                     p_ks: 0.032 
        ci_ks_bounds_left: 0.030 
       ci_ks_bounds_right: 0.034 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.033 
     ci_joint_bounds_left: 0.032 
    ci_joint_bounds_right: 0.035 

Current progress: 6 percent done.
ASTN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.373633e-01	ci left: 7.010558e-02	ci right 8.054343e-02	k: 752	n:10000
Cons ci ratio: 3.083799e-01	ci left: 1.344771e-02	ci right 1.844006e-02	k: 158	n:10000
KS ci ratio: 7.793559e-02	ci left: 1.939715e-01	ci right 2.098025e-01	k: 2018	n:10000
ASTN1   10000 perm   2 sec   (4054 perm/sec)   p_kst 2.018000e-01   p_cons 1.580000e-02   p_joint 7.520000e-02

Joint ci ratio: 1.179902e-01	ci left: 4.920621e-02	ci right 5.542476e-02	k: 1045	n:20000
Cons ci ratio: 1.989008e-01	ci left: 1.715307e-02	ci right 2.098856e-02	k: 380	n:20000
KS ci ratio: 5.510092e-02	ci left: 1.963554e-01	ci right 2.075314e-01	k: 4038	n:20000
ASTN1   20000 perm   5 sec   (3651 perm/sec)   p_kst 2.019000e-01   p_cons 1.900000e-02   p_joint 5.225000e-02

Joint ci ratio: 9.796415e-02	ci left: 4.817930e-02	ci right 5.317484e-02	k: 1519	n:30000
Cons ci ratio: 1.681158e-01	ci left: 1.630199e-02	ci right 1.932576e-02	k: 533	n:30000
KS ci ratio: 4.513697e-02	ci left: 1.963454e-01	ci right 2.054459e-01	k: 6026	n:30000
ASTN1   30000 perm   9 sec   (3491 perm/sec)   p_kst 2.008667e-01   p_cons 1.776667e-02   p_joint 5.063333e-02

Joint ci ratio: 8.364377e-02	ci left: 4.986876e-02	ci right 5.424656e-02	k: 2081	n:40000
Cons ci ratio: 1.255930e-01	ci left: 2.227994e-02	ci right 2.528974e-02	k: 950	n:40000
KS ci ratio: 3.920282e-02	ci left: 1.960398e-01	ci right 2.039038e-01	k: 7998	n:40000
ASTN1   40000 perm   12 sec   (3378 perm/sec)   p_kst 1.999500e-01   p_cons 2.375000e-02   p_joint 5.202500e-02

Joint ci ratio: 7.639810e-02	ci left: 4.810583e-02	ci right 5.194662e-02	k: 2500	n:50000
Cons ci ratio: 1.097943e-01	ci left: 2.349344e-02	ci right 2.624210e-02	k: 1242	n:50000
KS ci ratio: 3.508330e-02	ci left: 1.962829e-01	ci right 2.033120e-01	k: 9989	n:50000
ASTN1   50000 perm   15 sec   (3316 perm/sec)   p_kst 1.997800e-01   p_cons 2.484000e-02   p_joint 5.000000e-02

Joint ci ratio: 8.024583e-02	ci left: 3.671301e-02	ci right 3.979853e-02	k: 2294	n:60000
Cons ci ratio: 1.159277e-01	ci left: 1.761489e-02	ci right 1.979868e-02	k: 1121	n:60000
KS ci ratio: 3.202488e-02	ci left: 1.966068e-01	ci right 2.030222e-01	k: 11988	n:60000
ASTN1   60000 perm   18 sec   (3260 perm/sec)   p_kst 1.998000e-01   p_cons 1.868333e-02   p_joint 3.823333e-02

Joint ci ratio: 6.811849e-02	ci left: 4.363063e-02	ci right 4.672150e-02	k: 3161	n:70000
Cons ci ratio: 1.057343e-01	ci left: 1.823799e-02	ci right 2.028785e-02	k: 1347	n:70000
KS ci ratio: 2.962966e-02	ci left: 1.970564e-01	ci right 2.029971e-01	k: 14001	n:70000
ASTN1   70000 perm   22 sec   (3179 perm/sec)   p_kst 2.000143e-01   p_cons 1.924286e-02   p_joint 4.515714e-02

Joint ci ratio: 6.346852e-02	ci left: 4.406616e-02	ci right 4.696692e-02	k: 3640	n:80000
Cons ci ratio: 9.902252e-02	ci left: 1.826030e-02	ci right 2.017480e-02	k: 1536	n:80000
KS ci ratio: 2.769362e-02	ci left: 1.975064e-01	ci right 2.030653e-01	k: 16022	n:80000
ASTN1   80000 perm   25 sec   (3140 perm/sec)   p_kst 2.002750e-01   p_cons 1.920000e-02   p_joint 4.550000e-02

Outputting figure to mutsig2_images.part000000000012/ASTN1.12_3981_80000_0.20028_0.0192_0.0455.png
                gene_name: ASTN1
               theta_stop: 0.099 
                    nperm: 80000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.019 
      ci_cons_bounds_left: 0.018 
     ci_cons_bounds_right: 0.020 
                  p_joint: 0.045 
     ci_joint_bounds_left: 0.044 
    ci_joint_bounds_right: 0.047 

Current progress: 9 percent done.
ASXL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.977580e-02	ci left: 3.731590e-01	ci right 3.923094e-01	k: 3827	n:10000
Cons ci ratio: 7.684031e-02	ci left: 1.985040e-01	ci right 2.144674e-01	k: 2064	n:10000
KS ci ratio: 2.719853e-02	ci left: 6.657201e-01	ci right 6.841779e-01	k: 6750	n:10000
ASXL3   10000 perm   3 sec   (3204 perm/sec)   p_kst 6.750000e-01   p_cons 2.064000e-01   p_joint 3.827000e-01

Outputting figure to mutsig2_images.part000000000012/ASXL3.12_6795_10000_0.675_0.2064_0.3827.png
                gene_name: ASXL3
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 11 percent done.
ATF7IP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.741871e-01	ci left: 4.398826e-02	ci right 5.247740e-02	k: 481	n:10000
Cons ci ratio: 2.331010e-01	ci left: 2.428868e-02	ci right 3.079048e-02	k: 274	n:10000
KS ci ratio: 7.972063e-02	ci left: 1.868804e-01	ci right 2.024978e-01	k: 1946	n:10000
ATF7IP   10000 perm   3 sec   (3938 perm/sec)   p_kst 1.946000e-01   p_cons 2.740000e-02   p_joint 4.810000e-02

Joint ci ratio: 1.749006e-01	ci left: 2.235394e-02	ci right 2.668581e-02	k: 489	n:20000
Cons ci ratio: 1.662350e-01	ci left: 2.479765e-02	ci right 2.934125e-02	k: 540	n:20000
KS ci ratio: 5.711964e-02	ci left: 1.851273e-01	ci right 1.960628e-01	k: 3811	n:20000
ATF7IP   20000 perm   6 sec   (3540 perm/sec)   p_kst 1.905500e-01   p_cons 2.700000e-02   p_joint 2.445000e-02

Joint ci ratio: 8.708426e-02	ci left: 6.050498e-02	ci right 6.604663e-02	k: 1897	n:30000
Cons ci ratio: 1.305713e-01	ci left: 2.725927e-02	ci right 3.109930e-02	k: 874	n:30000
KS ci ratio: 4.554396e-02	ci left: 1.935035e-01	ci right 2.025551e-01	k: 5940	n:30000
ATF7IP   30000 perm   9 sec   (3402 perm/sec)   p_kst 1.980000e-01   p_cons 2.913333e-02   p_joint 6.323333e-02

Joint ci ratio: 9.331766e-02	ci left: 4.027503e-02	ci right 4.424177e-02	k: 1689	n:40000
Cons ci ratio: 1.128131e-01	ci left: 2.764472e-02	ci right 3.097408e-02	k: 1171	n:40000
KS ci ratio: 3.999185e-02	ci left: 1.897874e-01	ci right 1.975572e-01	k: 7746	n:40000
ATF7IP   40000 perm   12 sec   (3319 perm/sec)   p_kst 1.936500e-01   p_cons 2.927500e-02   p_joint 4.222500e-02

Joint ci ratio: 7.514142e-02	ci left: 4.967705e-02	ci right 5.357521e-02	k: 2580	n:50000
Cons ci ratio: 1.009389e-01	ci left: 2.780014e-02	ci right 3.077485e-02	k: 1463	n:50000
KS ci ratio: 3.588421e-02	ci left: 1.892110e-01	ci right 1.961447e-01	k: 9633	n:50000
ATF7IP   50000 perm   15 sec   (3263 perm/sec)   p_kst 1.926600e-01   p_cons 2.926000e-02   p_joint 5.160000e-02

Joint ci ratio: 7.000236e-02	ci left: 4.792539e-02	ci right 5.141834e-02	k: 2979	n:60000
Cons ci ratio: 9.224713e-02	ci left: 2.786729e-02	ci right 3.057851e-02	k: 1752	n:60000
KS ci ratio: 3.269778e-02	ci left: 1.900806e-01	ci right 1.964157e-01	k: 11594	n:60000
ATF7IP   60000 perm   19 sec   (3208 perm/sec)   p_kst 1.932333e-01   p_cons 2.920000e-02   p_joint 4.965000e-02

Outputting figure to mutsig2_images.part000000000012/ATF7IP.12_3869_60000_0.19323_0.0292_0.04965.png
                gene_name: ATF7IP
               theta_stop: 0.092 
                    nperm: 60000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.029 
      ci_cons_bounds_left: 0.028 
     ci_cons_bounds_right: 0.031 
                  p_joint: 0.050 
     ci_joint_bounds_left: 0.048 
    ci_joint_bounds_right: 0.051 

Current progress: 13 percent done.
ASXL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.738464e-02	ci left: 6.626992e-01	ci right 6.812006e-01	k: 6720	n:10000
Cons ci ratio: 3.616056e-02	ci left: 5.303714e-01	ci right 5.500052e-01	k: 5402	n:10000
KS ci ratio: 3.217680e-02	ci left: 5.877107e-01	ci right 6.070326e-01	k: 5974	n:10000
ASXL1   10000 perm   3 sec   (3834 perm/sec)   p_kst 5.974000e-01   p_cons 5.402000e-01   p_joint 6.720000e-01

Outputting figure to mutsig2_images.part000000000012/ASXL1.11_4684_10000_0.5974_0.5402_0.672.png
                gene_name: ASXL1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 15 percent done.
ASCC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.301790e-02	ci left: 7.349217e-01	ci right 7.521362e-01	k: 7436	n:10000
Cons ci ratio: 3.486271e-02	ci left: 5.485012e-01	ci right 5.680648e-01	k: 5583	n:10000
KS ci ratio: 2.989034e-02	ci left: 6.227620e-01	ci right 6.417609e-01	k: 6323	n:10000
ASCC3   10000 perm   3 sec   (3168 perm/sec)   p_kst 6.323000e-01   p_cons 5.583000e-01   p_joint 7.436000e-01

Outputting figure to mutsig2_images.part000000000012/ASCC3.10_6872_10000_0.6323_0.5583_0.7436.png
                gene_name: ASCC3
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 17 percent done.
ATAD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.643927e-02	ci left: 6.781102e-01	ci right 6.963806e-01	k: 6873	n:10000
KS ci ratio: 1.782385e-02	ci left: 8.211700e-01	ci right 8.360381e-01	k: 8287	n:10000
ATAD2   10000 perm   3 sec   (3884 perm/sec)   p_kst 8.287000e-01   p_cons 6.873000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000012/ATAD2.10_4285_10000_0.8287_0.6873_1.png
                gene_name: ATAD2
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 19 percent done.
ASB5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 6.918207e-01	ci left: 2.107242e-03	ci right 4.397341e-03	k: 31	n:10000
KS ci ratio: 3.456111e-01	ci left: 1.050669e-02	ci right 1.498385e-02	k: 126	n:10000
ASB5   10000 perm   2 sec   (5276 perm/sec)   p_kst 1.260000e-02   p_cons 3.100000e-03   p_joint 0

Joint ci ratio: 3.761731e-01	ci left: 4.386465e-03	ci right 6.461320e-03	k: 107	n:20000
Cons ci ratio: 5.139616e-01	ci left: 2.159255e-03	ci right 3.690949e-03	k: 57	n:20000
KS ci ratio: 2.478726e-01	ci left: 1.081866e-02	ci right 1.392552e-02	k: 246	n:20000
ASB5   20000 perm   4 sec   (4680 perm/sec)   p_kst 1.230000e-02   p_cons 2.850000e-03   p_joint 5.350000e-03

Joint ci ratio: 4.015396e-01	ci left: 2.532772e-03	ci right 3.833062e-03	k: 94	n:30000
Cons ci ratio: 3.994361e-01	ci left: 2.562755e-03	ci right 3.869722e-03	k: 95	n:30000
KS ci ratio: 1.941943e-01	ci left: 1.209779e-02	ci right 1.473103e-02	k: 401	n:30000
ASB5   30000 perm   7 sec   (4459 perm/sec)   p_kst 1.336667e-02   p_cons 3.166667e-03   p_joint 3.133333e-03

Joint ci ratio: 4.082129e-01	ci left: 1.832071e-03	ci right 2.792472e-03	k: 91	n:40000
Cons ci ratio: 3.432433e-01	ci left: 2.693205e-03	ci right 3.830801e-03	k: 129	n:40000
KS ci ratio: 1.681779e-01	ci left: 1.227219e-02	ci right 1.454927e-02	k: 535	n:40000
ASB5   40000 perm   9 sec   (4294 perm/sec)   p_kst 1.337500e-02   p_cons 3.225000e-03   p_joint 2.275000e-03

Joint ci ratio: 3.733423e-01	ci left: 1.790338e-03	ci right 2.629137e-03	k: 109	n:50000
Cons ci ratio: 3.094039e-01	ci left: 2.705539e-03	ci right 3.713506e-03	k: 159	n:50000
KS ci ratio: 1.513417e-01	ci left: 1.223721e-02	ci right 1.425989e-02	k: 661	n:50000
ASB5   50000 perm   12 sec   (4201 perm/sec)   p_kst 1.322000e-02   p_cons 3.180000e-03   p_joint 2.180000e-03

Joint ci ratio: 3.285669e-01	ci left: 1.978482e-03	ci right 2.770881e-03	k: 141	n:60000
Cons ci ratio: 2.656231e-01	ci left: 3.136587e-03	ci right 4.112397e-03	k: 216	n:60000
KS ci ratio: 1.384562e-01	ci left: 1.226986e-02	ci right 1.411101e-02	k: 790	n:60000
ASB5   60000 perm   15 sec   (4108 perm/sec)   p_kst 1.316667e-02   p_cons 3.600000e-03   p_joint 2.350000e-03

Joint ci ratio: 2.002790e-01	ci left: 4.897685e-03	ci right 6.001062e-03	k: 380	n:70000
Cons ci ratio: 2.435967e-01	ci left: 3.236925e-03	ci right 4.147836e-03	k: 257	n:70000
KS ci ratio: 1.283149e-01	ci left: 1.231227e-02	ci right 1.401415e-02	k: 920	n:70000
ASB5   70000 perm   17 sec   (4024 perm/sec)   p_kst 1.314286e-02   p_cons 3.671429e-03   p_joint 5.428571e-03

Joint ci ratio: 1.972503e-01	ci left: 4.427900e-03	ci right 5.408533e-03	k: 392	n:80000
Cons ci ratio: 2.278086e-01	ci left: 3.267529e-03	ci right 4.119088e-03	k: 294	n:80000
KS ci ratio: 1.209375e-01	ci left: 1.217801e-02	ci right 1.375761e-02	k: 1036	n:80000
ASB5   80000 perm   20 sec   (3952 perm/sec)   p_kst 1.295000e-02   p_cons 3.675000e-03   p_joint 4.900000e-03

Joint ci ratio: 3.591062e-01	ci left: 1.085358e-03	ci right 1.569925e-03	k: 118	n:90000
Cons ci ratio: 2.131347e-01	ci left: 3.345405e-03	ci right 4.153766e-03	k: 336	n:90000
KS ci ratio: 1.152087e-01	ci left: 1.196782e-02	ci right 1.344161e-02	k: 1142	n:90000
ASB5   90000 perm   23 sec   (3883 perm/sec)   p_kst 1.268889e-02   p_cons 3.733333e-03   p_joint 1.311111e-03

Joint ci ratio: 3.546818e-01	ci left: 1.004124e-03	ci right 1.445625e-03	k: 121	n:100000
Cons ci ratio: 2.039668e-01	ci left: 3.304673e-03	ci right 4.064562e-03	k: 367	n:100000
KS ci ratio: 1.095152e-01	ci left: 1.195676e-02	ci right 1.335172e-02	k: 1264	n:100000
ASB5   100000 perm   26 sec   (3815 perm/sec)   p_kst 1.264000e-02   p_cons 3.670000e-03   p_joint 1.210000e-03

Joint ci ratio: 3.547017e-01	ci left: 9.128322e-04	ci right 1.314219e-03	k: 121	n:110000
Cons ci ratio: 1.949102e-01	ci left: 3.306547e-03	ci right 4.029102e-03	k: 402	n:110000
KS ci ratio: 1.042859e-01	ci left: 1.202003e-02	ci right 1.335130e-02	k: 1394	n:110000
ASB5   110000 perm   29 sec   (3753 perm/sec)   p_kst 1.267273e-02   p_cons 3.654545e-03   p_joint 1.100000e-03

Joint ci ratio: 4.153633e-01	ci left: 5.881950e-04	ci right 9.034103e-04	k: 88	n:120000
Cons ci ratio: 1.891414e-01	ci left: 3.229308e-03	ci right 3.911696e-03	k: 427	n:120000
KS ci ratio: 9.818716e-02	ci left: 1.246430e-02	ci right 1.375939e-02	k: 1572	n:120000
ASB5   120000 perm   33 sec   (3692 perm/sec)   p_kst 1.310000e-02   p_cons 3.558333e-03   p_joint 7.333333e-04

Joint ci ratio: 3.918477e-01	ci left: 6.189826e-04	ci right 9.270690e-04	k: 99	n:130000
Cons ci ratio: 1.824466e-01	ci left: 3.215605e-03	ci right 3.868388e-03	k: 459	n:130000
KS ci ratio: 9.481795e-02	ci left: 1.236123e-02	ci right 1.359909e-02	k: 1686	n:130000
ASB5   130000 perm   36 sec   (3635 perm/sec)   p_kst 1.296923e-02   p_cons 3.530769e-03   p_joint 7.615385e-04

Joint ci ratio: 3.805985e-01	ci left: 6.134654e-04	ci right 9.078490e-04	k: 105	n:140000
Cons ci ratio: 1.758785e-01	ci left: 3.224711e-03	ci right 3.853271e-03	k: 494	n:140000
KS ci ratio: 9.105884e-02	ci left: 1.246903e-02	ci right 1.366555e-02	k: 1828	n:140000
ASB5   140000 perm   39 sec   (3579 perm/sec)   p_kst 1.305714e-02   p_cons 3.528571e-03   p_joint 7.500000e-04

Joint ci ratio: 3.670009e-01	ci left: 6.208924e-04	ci right 9.056454e-04	k: 113	n:150000
Cons ci ratio: 1.698116e-01	ci left: 3.239351e-03	ci right 3.846755e-03	k: 530	n:150000
KS ci ratio: 8.791766e-02	ci left: 1.250460e-02	ci right 1.366100e-02	k: 1961	n:150000
ASB5   150000 perm   43 sec   (3524 perm/sec)   p_kst 1.307333e-02   p_cons 3.533333e-03   p_joint 7.533333e-04

Joint ci ratio: 3.607310e-01	ci left: 6.048000e-04	ci right 8.763203e-04	k: 117	n:160000
Cons ci ratio: 1.664065e-01	ci left: 3.168597e-03	ci right 3.749625e-03	k: 552	n:160000
KS ci ratio: 8.520434e-02	ci left: 1.249963e-02	ci right 1.361812e-02	k: 2088	n:160000
ASB5   160000 perm   46 sec   (3471 perm/sec)   p_kst 1.305000e-02   p_cons 3.450000e-03   p_joint 7.312500e-04

Joint ci ratio: 3.518969e-01	ci left: 6.013587e-04	ci right 8.632127e-04	k: 123	n:170000
Cons ci ratio: 1.624908e-01	ci left: 3.134492e-03	ci right 3.694419e-03	k: 579	n:170000
KS ci ratio: 8.268986e-02	ci left: 1.250725e-02	ci right 1.359180e-02	k: 2217	n:170000
ASB5   170000 perm   50 sec   (3420 perm/sec)   p_kst 1.304118e-02   p_cons 3.405882e-03   p_joint 7.235294e-04

Joint ci ratio: 3.410661e-01	ci left: 6.085281e-04	ci right 8.635522e-04	k: 131	n:180000
Cons ci ratio: 1.585770e-01	ci left: 3.114990e-03	ci right 3.656755e-03	k: 608	n:180000
KS ci ratio: 8.055969e-02	ci left: 1.246001e-02	ci right 1.351132e-02	k: 2336	n:180000
ASB5   180000 perm   53 sec   (3368 perm/sec)   p_kst 1.297778e-02   p_cons 3.377778e-03   p_joint 7.277778e-04

Joint ci ratio: 3.788530e-01	ci left: 4.567804e-04	ci right 6.747182e-04	k: 106	n:190000
Cons ci ratio: 1.533731e-01	ci left: 3.163475e-03	ci right 3.693959e-03	k: 650	n:190000
KS ci ratio: 7.836011e-02	ci left: 1.249031e-02	ci right 1.351410e-02	k: 2469	n:190000
ASB5   190000 perm   57 sec   (3321 perm/sec)   p_kst 1.299474e-02   p_cons 3.421053e-03   p_joint 5.578947e-04

Joint ci ratio: 3.477324e-01	ci left: 5.248331e-04	ci right 7.500502e-04	k: 126	n:200000
Cons ci ratio: 1.490823e-01	ci left: 3.188116e-03	ci right 3.706441e-03	k: 688	n:200000
KS ci ratio: 7.726915e-02	ci left: 1.221382e-02	ci right 1.320038e-02	k: 2540	n:200000
ASB5   200000 perm   61 sec   (3276 perm/sec)   p_kst 1.270000e-02   p_cons 3.440000e-03   p_joint 6.300000e-04

Joint ci ratio: 2.152923e-01	ci left: 1.406550e-03	ci right 1.750300e-03	k: 330	n:210000
Cons ci ratio: 1.586155e-01	ci left: 2.669942e-03	ci right 3.134424e-03	k: 608	n:210000
KS ci ratio: 7.560888e-02	ci left: 1.216001e-02	ci right 1.312018e-02	k: 2653	n:210000
ASB5   210000 perm   65 sec   (3229 perm/sec)   p_kst 1.263333e-02   p_cons 2.895238e-03   p_joint 1.571429e-03

Joint ci ratio: 2.186329e-01	ci left: 1.299623e-03	ci right 1.622831e-03	k: 320	n:220000
Cons ci ratio: 1.550907e-01	ci left: 2.670859e-03	ci right 3.124214e-03	k: 636	n:220000
KS ci ratio: 7.403765e-02	ci left: 1.211576e-02	ci right 1.305170e-02	k: 2767	n:220000
ASB5   220000 perm   69 sec   (3185 perm/sec)   p_kst 1.257727e-02   p_cons 2.890909e-03   p_joint 1.454545e-03

Joint ci ratio: 2.153071e-01	ci left: 1.284233e-03	ci right 1.598112e-03	k: 330	n:230000
Cons ci ratio: 1.515624e-01	ci left: 2.680166e-03	ci right 3.123813e-03	k: 666	n:230000
KS ci ratio: 7.248409e-02	ci left: 1.210116e-02	ci right 1.301553e-02	k: 2887	n:230000
ASB5   230000 perm   73 sec   (3144 perm/sec)   p_kst 1.255217e-02   p_cons 2.895652e-03   p_joint 1.434783e-03

Joint ci ratio: 2.115084e-01	ci left: 1.278050e-03	ci right 1.584193e-03	k: 342	n:240000
Cons ci ratio: 1.482645e-01	ci left: 2.688805e-03	ci right 3.123338e-03	k: 696	n:240000
KS ci ratio: 7.102439e-02	ci left: 1.208797e-02	ci right 1.298219e-02	k: 3007	n:240000
ASB5   240000 perm   77 sec   (3103 perm/sec)   p_kst 1.252917e-02   p_cons 2.900000e-03   p_joint 1.425000e-03

Joint ci ratio: 2.084928e-01	ci left: 1.264824e-03	ci right 1.562928e-03	k: 352	n:250000
Cons ci ratio: 1.452732e-01	ci left: 2.692993e-03	ci right 3.118661e-03	k: 725	n:250000
KS ci ratio: 6.950335e-02	ci left: 1.212711e-02	ci right 1.300424e-02	k: 3140	n:250000
ASB5   250000 perm   82 sec   (3061 perm/sec)   p_kst 1.256000e-02   p_cons 2.900000e-03   p_joint 1.408000e-03

Joint ci ratio: 2.067464e-01	ci left: 1.238052e-03	ci right 1.527093e-03	k: 358	n:260000
Cons ci ratio: 1.432188e-01	ci left: 2.667268e-03	ci right 3.082398e-03	k: 746	n:260000
KS ci ratio: 6.811818e-02	ci left: 1.214831e-02	ci right 1.300876e-02	k: 3269	n:260000
ASB5   260000 perm   86 sec   (3021 perm/sec)   p_kst 1.257308e-02   p_cons 2.869231e-03   p_joint 1.376923e-03

Joint ci ratio: 2.039272e-01	ci left: 1.227330e-03	ci right 1.509473e-03	k: 368	n:270000
Cons ci ratio: 1.406081e-01	ci left: 2.668502e-03	ci right 3.075619e-03	k: 774	n:270000
KS ci ratio: 6.703269e-02	ci left: 1.208796e-02	ci right 1.292996e-02	k: 3376	n:270000
ASB5   270000 perm   91 sec   (2980 perm/sec)   p_kst 1.250370e-02   p_cons 2.866667e-03   p_joint 1.362963e-03

Joint ci ratio: 2.039322e-01	ci left: 1.183494e-03	ci right 1.455567e-03	k: 368	n:280000
Cons ci ratio: 1.381350e-01	ci left: 2.669712e-03	ci right 3.069260e-03	k: 802	n:280000
KS ci ratio: 6.600707e-02	ci left: 1.202851e-02	ci right 1.285306e-02	k: 3482	n:280000
ASB5   280000 perm   95 sec   (2943 perm/sec)   p_kst 1.243571e-02   p_cons 2.864286e-03   p_joint 1.314286e-03

Joint ci ratio: 2.094060e-01	ci left: 1.080551e-03	ci right 1.336481e-03	k: 349	n:290000
Cons ci ratio: 1.352991e-01	ci left: 2.690886e-03	ci right 3.084670e-03	k: 836	n:290000
KS ci ratio: 6.503629e-02	ci left: 1.196985e-02	ci right 1.277787e-02	k: 3587	n:290000
ASB5   290000 perm   100 sec   (2907 perm/sec)   p_kst 1.236897e-02   p_cons 2.882759e-03   p_joint 1.203448e-03

Joint ci ratio: 2.082223e-01	ci left: 1.057167e-03	ci right 1.305963e-03	k: 353	n:300000
Cons ci ratio: 1.331687e-01	ci left: 2.688167e-03	ci right 3.074868e-03	k: 863	n:300000
KS ci ratio: 6.395821e-02	ci left: 1.197097e-02	ci right 1.276516e-02	k: 3709	n:300000
ASB5   300000 perm   104 sec   (2871 perm/sec)   p_kst 1.236333e-02   p_cons 2.876667e-03   p_joint 1.176667e-03

Joint ci ratio: 2.082263e-01	ci left: 1.023063e-03	ci right 1.263838e-03	k: 353	n:310000
Cons ci ratio: 1.309885e-01	ci left: 2.691910e-03	ci right 3.072316e-03	k: 892	n:310000
KS ci ratio: 6.260203e-02	ci left: 1.209914e-02	ci right 1.288420e-02	k: 3871	n:310000
ASB5   310000 perm   109 sec   (2836 perm/sec)   p_kst 1.248710e-02   p_cons 2.877419e-03   p_joint 1.138710e-03

Joint ci ratio: 2.059137e-01	ci left: 1.014796e-03	ci right 1.250638e-03	k: 361	n:320000
Cons ci ratio: 1.288420e-01	ci left: 2.698491e-03	ci right 3.073101e-03	k: 922	n:320000
KS ci ratio: 6.163097e-02	ci left: 1.209945e-02	ci right 1.287192e-02	k: 3994	n:320000
ASB5   320000 perm   114 sec   (2801 perm/sec)   p_kst 1.248125e-02   p_cons 2.881250e-03   p_joint 1.128125e-03

Joint ci ratio: 2.150294e-01	ci left: 8.979185e-04	ci right 1.117057e-03	k: 331	n:330000
Cons ci ratio: 1.267976e-01	ci left: 2.704722e-03	ci right 3.073791e-03	k: 952	n:330000
KS ci ratio: 6.066646e-02	ci left: 1.211475e-02	ci right 1.287567e-02	k: 4122	n:330000
ASB5   330000 perm   119 sec   (2767 perm/sec)   p_kst 1.249091e-02   p_cons 2.884848e-03   p_joint 1.003030e-03

Joint ci ratio: 2.156838e-01	ci left: 8.659425e-04	ci right 1.078005e-03	k: 329	n:340000
Cons ci ratio: 1.245303e-01	ci left: 2.724878e-03	ci right 3.089558e-03	k: 987	n:340000
KS ci ratio: 5.968901e-02	ci left: 1.215242e-02	ci right 1.290298e-02	k: 4258	n:340000
ASB5   340000 perm   124 sec   (2734 perm/sec)   p_kst 1.252353e-02   p_cons 2.902941e-03   p_joint 9.676471e-04

Joint ci ratio: 2.128017e-01	ci left: 8.655359e-04	ci right 1.074297e-03	k: 338	n:350000
Cons ci ratio: 1.222009e-01	ci left: 2.752248e-03	ci right 3.113203e-03	k: 1025	n:350000
KS ci ratio: 5.883872e-02	ci left: 1.215424e-02	ci right 1.289386e-02	k: 4382	n:350000
ASB5   350000 perm   130 sec   (2702 perm/sec)   p_kst 1.252000e-02   p_cons 2.928571e-03   p_joint 9.657143e-04

Joint ci ratio: 2.094306e-01	ci left: 8.704336e-04	ci right 1.076624e-03	k: 349	n:360000
Cons ci ratio: 1.206819e-01	ci left: 2.745824e-03	ci right 3.101141e-03	k: 1051	n:360000
KS ci ratio: 5.809561e-02	ci left: 1.212592e-02	ci right 1.285418e-02	k: 4495	n:360000
ASB5   360000 perm   135 sec   (2671 perm/sec)   p_kst 1.248611e-02   p_cons 2.919444e-03   p_joint 9.694444e-04

Joint ci ratio: 2.076593e-01	ci left: 8.622773e-04	ci right 1.064588e-03	k: 355	n:370000
Cons ci ratio: 1.197766e-01	ci left: 2.713553e-03	ci right 3.061873e-03	k: 1067	n:370000
KS ci ratio: 5.731074e-02	ci left: 1.212849e-02	ci right 1.284674e-02	k: 4619	n:370000
ASB5   370000 perm   140 sec   (2641 perm/sec)   p_kst 1.248378e-02   p_cons 2.883784e-03   p_joint 9.594595e-04

Joint ci ratio: 2.048027e-01	ci left: 8.645428e-04	ci right 1.064246e-03	k: 365	n:380000
Cons ci ratio: 1.182910e-01	ci left: 2.711080e-03	ci right 3.054465e-03	k: 1094	n:380000
KS ci ratio: 5.651464e-02	ci left: 1.214916e-02	ci right 1.285831e-02	k: 4750	n:380000
ASB5   380000 perm   145 sec   (2612 perm/sec)   p_kst 1.250000e-02   p_cons 2.878947e-03   p_joint 9.605263e-04

Joint ci ratio: 2.026009e-01	ci left: 8.618414e-04	ci right 1.058515e-03	k: 373	n:390000
Cons ci ratio: 1.165472e-01	ci left: 2.723696e-03	ci right 3.063243e-03	k: 1127	n:390000
KS ci ratio: 5.572770e-02	ci left: 1.217894e-02	ci right 1.287961e-02	k: 4885	n:390000
ASB5   390000 perm   151 sec   (2583 perm/sec)   p_kst 1.252564e-02   p_cons 2.889744e-03   p_joint 9.564103e-04

Joint ci ratio: 1.996853e-01	ci left: 8.664106e-04	ci right 1.060935e-03	k: 384	n:400000
Cons ci ratio: 1.152774e-01	ci left: 2.716291e-03	ci right 3.050974e-03	k: 1152	n:400000
KS ci ratio: 5.503939e-02	ci left: 1.217771e-02	ci right 1.286938e-02	k: 5008	n:400000
ASB5   400000 perm   157 sec   (2555 perm/sec)   p_kst 1.252000e-02   p_cons 2.880000e-03   p_joint 9.600000e-04

Joint ci ratio: 1.978950e-01	ci left: 8.615018e-04	ci right 1.052981e-03	k: 391	n:410000
Cons ci ratio: 1.138061e-01	ci left: 2.721115e-03	ci right 3.051826e-03	k: 1182	n:410000
KS ci ratio: 5.436524e-02	ci left: 1.218140e-02	ci right 1.286454e-02	k: 5133	n:410000
ASB5   410000 perm   162 sec   (2528 perm/sec)   p_kst 1.251951e-02   p_cons 2.882927e-03   p_joint 9.536585e-04

Joint ci ratio: 2.037011e-01	ci left: 7.912390e-04	ci right 9.729033e-04	k: 369	n:420000
Cons ci ratio: 1.122045e-01	ci left: 2.734992e-03	ci right 3.062402e-03	k: 1216	n:420000
KS ci ratio: 5.379821e-02	ci left: 1.214738e-02	ci right 1.282128e-02	k: 5242	n:420000
ASB5   420000 perm   168 sec   (2500 perm/sec)   p_kst 1.248095e-02   p_cons 2.895238e-03   p_joint 8.785714e-04

Joint ci ratio: 2.007385e-01	ci left: 7.971244e-04	ci right 9.771523e-04	k: 380	n:430000
Cons ci ratio: 1.107574e-01	ci left: 2.743732e-03	ci right 3.067675e-03	k: 1248	n:430000
KS ci ratio: 5.322339e-02	ci left: 1.212644e-02	ci right 1.279178e-02	k: 5356	n:430000
ASB5   430000 perm   174 sec   (2472 perm/sec)   p_kst 1.245581e-02   p_cons 2.902326e-03   p_joint 8.837209e-04

Joint ci ratio: 1.968985e-01	ci left: 8.114026e-04	ci right 9.907292e-04	k: 395	n:440000
Cons ci ratio: 1.093221e-01	ci left: 2.754311e-03	ci right 3.075018e-03	k: 1281	n:440000
KS ci ratio: 5.266173e-02	ci left: 1.210874e-02	ci right 1.276588e-02	k: 5471	n:440000
ASB5   440000 perm   180 sec   (2446 perm/sec)   p_kst 1.243409e-02   p_cons 2.911364e-03   p_joint 8.977273e-04

Joint ci ratio: 1.976513e-01	ci left: 7.870330e-04	ci right 9.617188e-04	k: 392	n:450000
Cons ci ratio: 1.078590e-01	ci left: 2.768770e-03	ci right 3.086572e-03	k: 1316	n:450000
KS ci ratio: 5.209388e-02	ci left: 1.210283e-02	ci right 1.275236e-02	k: 5591	n:450000
ASB5   450000 perm   186 sec   (2421 perm/sec)   p_kst 1.242444e-02   p_cons 2.924444e-03   p_joint 8.711111e-04

Joint ci ratio: 1.966540e-01	ci left: 7.781897e-04	ci right 9.499367e-04	k: 396	n:460000
Cons ci ratio: 1.069701e-01	ci left: 2.755120e-03	ci right 3.068585e-03	k: 1338	n:460000
KS ci ratio: 5.153944e-02	ci left: 1.209936e-02	ci right 1.274158e-02	k: 5712	n:460000
ASB5   460000 perm   192 sec   (2396 perm/sec)   p_kst 1.241739e-02   p_cons 2.908696e-03   p_joint 8.608696e-04

Joint ci ratio: 1.947022e-01	ci left: 7.778198e-04	ci right 9.475795e-04	k: 404	n:470000
Cons ci ratio: 1.059857e-01	ci left: 2.748274e-03	ci right 3.057904e-03	k: 1363	n:470000
KS ci ratio: 5.102006e-02	ci left: 1.208767e-02	ci right 1.272262e-02	k: 5829	n:470000
ASB5   470000 perm   198 sec   (2370 perm/sec)   p_kst 1.240213e-02   p_cons 2.900000e-03   p_joint 8.595745e-04

Joint ci ratio: 1.916498e-01	ci left: 7.873892e-04	ci right 9.562293e-04	k: 417	n:480000
Cons ci ratio: 1.052563e-01	ci left: 2.729555e-03	ci right 3.034828e-03	k: 1382	n:480000
KS ci ratio: 5.047740e-02	ci left: 1.209502e-02	ci right 1.272339e-02	k: 5955	n:480000
ASB5   480000 perm   205 sec   (2346 perm/sec)   p_kst 1.240625e-02   p_cons 2.879167e-03   p_joint 8.687500e-04

Joint ci ratio: 1.907402e-01	ci left: 7.790922e-04	ci right 9.452684e-04	k: 421	n:490000
Cons ci ratio: 1.039118e-01	ci left: 2.745399e-03	ci right 3.048282e-03	k: 1418	n:490000
KS ci ratio: 5.000167e-02	ci left: 1.207791e-02	ci right 1.269931e-02	k: 6069	n:490000
ASB5   490000 perm   211 sec   (2322 perm/sec)   p_kst 1.238571e-02   p_cons 2.893878e-03   p_joint 8.591837e-04

Joint ci ratio: 1.937520e-01	ci left: 7.387601e-04	ci right 8.991152e-04	k: 408	n:500000
Cons ci ratio: 1.032240e-01	ci left: 2.727505e-03	ci right 3.026302e-03	k: 1437	n:500000
KS ci ratio: 4.951888e-02	ci left: 1.207139e-02	ci right 1.268628e-02	k: 6188	n:500000
ASB5   500000 perm   218 sec   (2298 perm/sec)   p_kst 1.237600e-02   p_cons 2.874000e-03   p_joint 8.160000e-04

Joint ci ratio: 1.949498e-01	ci left: 7.149469e-04	ci right 8.712063e-04	k: 403	n:510000
Cons ci ratio: 1.021986e-01	ci left: 2.729427e-03	ci right 3.025285e-03	k: 1466	n:510000
KS ci ratio: 4.906161e-02	ci left: 1.205934e-02	ci right 1.266779e-02	k: 6304	n:510000
ASB5   510000 perm   224 sec   (2275 perm/sec)   p_kst 1.236078e-02   p_cons 2.874510e-03   p_joint 7.901961e-04

Joint ci ratio: 1.937551e-01	ci left: 7.103453e-04	ci right 8.645353e-04	k: 408	n:520000
Cons ci ratio: 1.015441e-01	ci left: 2.712544e-03	ci right 3.004577e-03	k: 1485	n:520000
KS ci ratio: 4.855557e-02	ci left: 1.207818e-02	ci right 1.268112e-02	k: 6436	n:520000
ASB5   520000 perm   231 sec   (2252 perm/sec)   p_kst 1.237692e-02   p_cons 2.855769e-03   p_joint 7.846154e-04

Joint ci ratio: 2.020867e-01	ci left: 6.377600e-04	ci right 7.828822e-04	k: 375	n:530000
Cons ci ratio: 1.004015e-01	ci left: 2.723896e-03	ci right 3.013657e-03	k: 1519	n:530000
KS ci ratio: 4.806858e-02	ci left: 1.209447e-02	ci right 1.269201e-02	k: 6567	n:530000
ASB5   530000 perm   238 sec   (2230 perm/sec)   p_kst 1.239057e-02   p_cons 2.866038e-03   p_joint 7.075472e-04

Joint ci ratio: 2.031723e-01	ci left: 6.189174e-04	ci right 7.606025e-04	k: 371	n:540000
Cons ci ratio: 9.932865e-02	ci left: 2.733038e-03	ci right 3.020484e-03	k: 1552	n:540000
KS ci ratio: 4.761035e-02	ci left: 1.210288e-02	ci right 1.269497e-02	k: 6694	n:540000
ASB5   540000 perm   245 sec   (2208 perm/sec)   p_kst 1.239630e-02   p_cons 2.874074e-03   p_joint 6.870370e-04

Joint ci ratio: 2.015536e-01	ci left: 6.180207e-04	ci right 7.582346e-04	k: 377	n:550000
Cons ci ratio: 9.838283e-02	ci left: 2.736544e-03	ci right 3.021460e-03	k: 1582	n:550000
KS ci ratio: 4.720352e-02	ci left: 1.209123e-02	ci right 1.267756e-02	k: 6810	n:550000
ASB5   550000 perm   251 sec   (2187 perm/sec)   p_kst 1.238182e-02   p_cons 2.876364e-03   p_joint 6.854545e-04

Joint ci ratio: 1.706774e-01	ci left: 8.607533e-04	ci right 1.023052e-03	k: 526	n:560000
Cons ci ratio: 9.764583e-02	ci left: 2.729483e-03	ci right 3.011413e-03	k: 1606	n:560000
KS ci ratio: 4.643839e-02	ci left: 1.227242e-02	ci right 1.285764e-02	k: 7035	n:560000
ASB5   560000 perm   259 sec   (2166 perm/sec)   p_kst 1.256250e-02   p_cons 2.867857e-03   p_joint 9.392857e-04

Joint ci ratio: 1.689233e-01	ci left: 8.641307e-04	ci right 1.025222e-03	k: 537	n:570000
Cons ci ratio: 9.698480e-02	ci left: 2.719254e-03	ci right 2.998118e-03	k: 1628	n:570000
KS ci ratio: 4.603133e-02	ci left: 1.227388e-02	ci right 1.285390e-02	k: 7160	n:570000
ASB5   570000 perm   266 sec   (2145 perm/sec)   p_kst 1.256140e-02   p_cons 2.856140e-03   p_joint 9.421053e-04

Joint ci ratio: 1.673748e-01	ci left: 8.657477e-04	ci right 1.025512e-03	k: 547	n:580000
Cons ci ratio: 9.607475e-02	ci left: 2.724529e-03	ci right 3.001164e-03	k: 1659	n:580000
KS ci ratio: 4.560944e-02	ci left: 1.228895e-02	ci right 1.286421e-02	k: 7293	n:580000
ASB5   580000 perm   273 sec   (2125 perm/sec)   p_kst 1.257414e-02   p_cons 2.860345e-03   p_joint 9.431034e-04

Joint ci ratio: 1.661665e-01	ci left: 8.640674e-04	ci right 1.022255e-03	k: 555	n:590000
Cons ci ratio: 9.518985e-02	ci left: 2.729636e-03	ci right 3.004095e-03	k: 1690	n:590000
KS ci ratio: 4.523596e-02	ci left: 1.228342e-02	ci right 1.285359e-02	k: 7414	n:590000
ASB5   590000 perm   280 sec   (2105 perm/sec)   p_kst 1.256610e-02   p_cons 2.864407e-03   p_joint 9.406780e-04

Joint ci ratio: 1.664678e-01	ci left: 8.464710e-04	ci right 1.001746e-03	k: 553	n:600000
Cons ci ratio: 9.430150e-02	ci left: 2.736212e-03	ci right 3.008623e-03	k: 1722	n:600000
KS ci ratio: 4.483838e-02	ci left: 1.229622e-02	ci right 1.286184e-02	k: 7546	n:600000
ASB5   600000 perm   288 sec   (2086 perm/sec)   p_kst 1.257667e-02   p_cons 2.870000e-03   p_joint 9.216667e-04

Joint ci ratio: 1.663189e-01	ci left: 8.341651e-04	ci right 9.870323e-04	k: 554	n:610000
Cons ci ratio: 9.367877e-02	ci left: 2.728174e-03	ci right 2.997893e-03	k: 1745	n:610000
KS ci ratio: 4.444523e-02	ci left: 1.231186e-02	ci right 1.287311e-02	k: 7680	n:610000
ASB5   610000 perm   295 sec   (2066 perm/sec)   p_kst 1.259016e-02   p_cons 2.860656e-03   p_joint 9.081967e-04

Joint ci ratio: 1.664703e-01	ci left: 8.191645e-04	ci right 9.694331e-04	k: 553	n:620000
Cons ci ratio: 9.285787e-02	ci left: 2.733006e-03	ci right 3.000705e-03	k: 1776	n:620000
KS ci ratio: 4.406511e-02	ci left: 1.232543e-02	ci right 1.288237e-02	k: 7813	n:620000
ASB5   620000 perm   303 sec   (2047 perm/sec)   p_kst 1.260161e-02   p_cons 2.864516e-03   p_joint 8.919355e-04

Joint ci ratio: 1.648415e-01	ci left: 8.228985e-04	ci right 9.722286e-04	k: 564	n:630000
Cons ci ratio: 9.223743e-02	ci left: 2.726838e-03	ci right 2.992052e-03	k: 1800	n:630000
KS ci ratio: 4.370572e-02	ci left: 1.233230e-02	ci right 1.288489e-02	k: 7942	n:630000
ASB5   630000 perm   311 sec   (2029 perm/sec)   p_kst 1.260635e-02   p_cons 2.857143e-03   p_joint 8.952381e-04

Joint ci ratio: 1.634017e-01	ci left: 8.250240e-04	ci right 9.733036e-04	k: 574	n:640000
Cons ci ratio: 9.132864e-02	ci left: 2.739190e-03	ci right 3.002841e-03	k: 1836	n:640000
KS ci ratio: 4.336314e-02	ci left: 1.233434e-02	ci right 1.288258e-02	k: 8068	n:640000
ASB5   640000 perm   318 sec   (2011 perm/sec)   p_kst 1.260625e-02   p_cons 2.868750e-03   p_joint 8.968750e-04

Joint ci ratio: 1.621377e-01	ci left: 8.256135e-04	ci right 9.727394e-04	k: 583	n:650000
Cons ci ratio: 9.073816e-02	ci left: 2.733131e-03	ci right 2.994408e-03	k: 1860	n:650000
KS ci ratio: 4.303913e-02	ci left: 1.233025e-02	ci right 1.287411e-02	k: 8190	n:650000
ASB5   650000 perm   326 sec   (1993 perm/sec)   p_kst 1.260000e-02   p_cons 2.861538e-03   p_joint 8.969231e-04

Joint ci ratio: 1.648449e-01	ci left: 7.854928e-04	ci right 9.280380e-04	k: 564	n:660000
Cons ci ratio: 9.008712e-02	ci left: 2.731704e-03	ci right 2.990872e-03	k: 1887	n:660000
KS ci ratio: 4.272228e-02	ci left: 1.232629e-02	ci right 1.286588e-02	k: 8312	n:660000
ASB5   660000 perm   334 sec   (1976 perm/sec)   p_kst 1.259394e-02   p_cons 2.859091e-03   p_joint 8.545455e-04

Joint ci ratio: 1.632630e-01	ci left: 7.895130e-04	ci right 9.312779e-04	k: 575	n:670000
Cons ci ratio: 8.933301e-02	ci left: 2.737622e-03	ci right 2.995064e-03	k: 1919	n:670000
KS ci ratio: 4.243526e-02	ci left: 1.230917e-02	ci right 1.284431e-02	k: 8425	n:670000
ASB5   670000 perm   342 sec   (1960 perm/sec)   p_kst 1.257463e-02   p_cons 2.864179e-03   p_joint 8.582090e-04

Joint ci ratio: 1.632640e-01	ci left: 7.779021e-04	ci right 9.175831e-04	k: 575	n:680000
Cons ci ratio: 8.855204e-02	ci left: 2.746252e-03	ci right 3.002130e-03	k: 1953	n:680000
KS ci ratio: 4.209407e-02	ci left: 1.232750e-02	ci right 1.285902e-02	k: 8562	n:680000
ASB5   680000 perm   350 sec   (1943 perm/sec)   p_kst 1.259118e-02   p_cons 2.872059e-03   p_joint 8.455882e-04

Joint ci ratio: 1.825115e-01	ci left: 6.071459e-04	ci right 7.304422e-04	k: 460	n:690000
Cons ci ratio: 8.792437e-02	ci left: 2.746135e-03	ci right 3.000096e-03	k: 1981	n:690000
KS ci ratio: 4.173913e-02	ci left: 1.235822e-02	ci right 1.288646e-02	k: 8708	n:690000
ASB5   690000 perm   358 sec   (1926 perm/sec)   p_kst 1.262029e-02   p_cons 2.871014e-03   p_joint 6.666667e-04

Joint ci ratio: 1.815299e-01	ci left: 6.052897e-04	ci right 7.274754e-04	k: 465	n:700000
Cons ci ratio: 8.724459e-02	ci left: 2.750221e-03	ci right 3.002493e-03	k: 2012	n:700000
KS ci ratio: 4.145707e-02	ci left: 1.234991e-02	ci right 1.287414e-02	k: 8827	n:700000
ASB5   700000 perm   366 sec   (1911 perm/sec)   p_kst 1.261000e-02   p_cons 2.874286e-03   p_joint 6.642857e-04

Joint ci ratio: 1.805640e-01	ci left: 6.034876e-04	ci right 7.245904e-04	k: 470	n:710000
Cons ci ratio: 8.655911e-02	ci left: 2.755576e-03	ci right 3.006253e-03	k: 2044	n:710000
KS ci ratio: 4.117833e-02	ci left: 1.234323e-02	ci right 1.286357e-02	k: 8947	n:710000
ASB5   710000 perm   375 sec   (1895 perm/sec)   p_kst 1.260141e-02   p_cons 2.878873e-03   p_joint 6.619718e-04

Joint ci ratio: 1.796134e-01	ci left: 6.017371e-04	ci right 7.217838e-04	k: 475	n:720000
Cons ci ratio: 8.599339e-02	ci left: 2.753995e-03	ci right 3.002809e-03	k: 2071	n:720000
KS ci ratio: 4.088231e-02	ci left: 1.235050e-02	ci right 1.286732e-02	k: 9077	n:720000
ASB5   720000 perm   383 sec   (1879 perm/sec)   p_kst 1.260694e-02   p_cons 2.876389e-03   p_joint 6.597222e-04

Joint ci ratio: 1.799930e-01	ci left: 5.908774e-04	ci right 7.090339e-04	k: 473	n:730000
Cons ci ratio: 8.535710e-02	ci left: 2.757825e-03	ci right 3.005050e-03	k: 2102	n:730000
KS ci ratio: 4.062163e-02	ci left: 1.233996e-02	ci right 1.285296e-02	k: 9194	n:730000
ASB5   730000 perm   392 sec   (1864 perm/sec)   p_kst 1.259452e-02   p_cons 2.879452e-03   p_joint 6.479452e-04

Joint ci ratio: 1.779396e-01	ci left: 5.970918e-04	ci right 7.149822e-04	k: 484	n:740000
Cons ci ratio: 8.491450e-02	ci left: 2.749654e-03	ci right 2.994804e-03	k: 2124	n:740000
KS ci ratio: 4.035491e-02	ci left: 1.233640e-02	ci right 1.284581e-02	k: 9316	n:740000
ASB5   740000 perm   400 sec   (1849 perm/sec)   p_kst 1.258919e-02   p_cons 2.870270e-03   p_joint 6.540541e-04

Joint ci ratio: 1.766692e-01	ci left: 5.980497e-04	ci right 7.151962e-04	k: 491	n:750000
Cons ci ratio: 8.447870e-02	ci left: 2.741703e-03	ci right 2.984828e-03	k: 2146	n:750000
KS ci ratio: 4.008907e-02	ci left: 1.233558e-02	ci right 1.284153e-02	k: 9440	n:750000
ASB5   750000 perm   409 sec   (1834 perm/sec)   p_kst 1.258667e-02   p_cons 2.861333e-03   p_joint 6.546667e-04

Joint ci ratio: 1.752499e-01	ci left: 6.002434e-04	ci right 7.167751e-04	k: 499	n:760000
Cons ci ratio: 8.391386e-02	ci left: 2.742983e-03	ci right 2.984515e-03	k: 2175	n:760000
KS ci ratio: 3.984741e-02	ci left: 1.232307e-02	ci right 1.282539e-02	k: 9555	n:760000
ASB5   760000 perm   418 sec   (1819 perm/sec)   p_kst 1.257237e-02   p_cons 2.861842e-03   p_joint 6.565789e-04

Joint ci ratio: 1.752507e-01	ci left: 5.924478e-04	ci right 7.074666e-04	k: 499	n:770000
Cons ci ratio: 8.336020e-02	ci left: 2.744234e-03	ci right 2.984205e-03	k: 2204	n:770000
KS ci ratio: 3.959348e-02	ci left: 1.232119e-02	ci right 1.282015e-02	k: 9678	n:770000
ASB5   770000 perm   426 sec   (1806 perm/sec)   p_kst 1.256883e-02   p_cons 2.862338e-03   p_joint 6.480519e-04

Joint ci ratio: 1.742086e-01	ci left: 5.922082e-04	ci right 7.064249e-04	k: 505	n:780000
Cons ci ratio: 8.276165e-02	ci left: 2.749226e-03	ci right 2.987823e-03	k: 2236	n:780000
KS ci ratio: 3.933013e-02	ci left: 1.232825e-02	ci right 1.282410e-02	k: 9808	n:780000
ASB5   780000 perm   435 sec   (1792 perm/sec)   p_kst 1.257436e-02   p_cons 2.866667e-03   p_joint 6.474359e-04

Joint ci ratio: 1.784965e-01	ci left: 5.556720e-04	ci right 6.657649e-04	k: 481	n:790000
Cons ci ratio: 8.226676e-02	ci left: 2.747897e-03	ci right 2.984885e-03	k: 2263	n:790000
KS ci ratio: 3.910185e-02	ci left: 1.231633e-02	ci right 1.280877e-02	k: 9923	n:790000
ASB5   790000 perm   444 sec   (1778 perm/sec)   p_kst 1.256076e-02   p_cons 2.864557e-03   p_joint 6.088608e-04

Joint ci ratio: 1.784972e-01	ci left: 5.487259e-04	ci right 6.574430e-04	k: 481	n:800000
Cons ci ratio: 8.149574e-02	ci left: 2.766199e-03	ci right 3.002423e-03	k: 2306	n:800000
KS ci ratio: 3.883248e-02	ci left: 1.233320e-02	ci right 1.282284e-02	k: 10061	n:800000
ASB5   800000 perm   453 sec   (1765 perm/sec)   p_kst 1.257625e-02   p_cons 2.882500e-03   p_joint 6.012500e-04

Joint ci ratio: 1.805714e-01	ci left: 5.289811e-04	ci right 6.351372e-04	k: 470	n:810000
Cons ci ratio: 8.097091e-02	ci left: 2.768333e-03	ci right 3.003146e-03	k: 2336	n:810000
KS ci ratio: 3.861272e-02	ci left: 1.232154e-02	ci right 1.280788e-02	k: 10176	n:810000
ASB5   810000 perm   463 sec   (1751 perm/sec)   p_kst 1.256296e-02   p_cons 2.883951e-03   p_joint 5.802469e-04

Joint ci ratio: 1.798097e-01	ci left: 5.271881e-04	ci right 6.324895e-04	k: 474	n:820000
Cons ci ratio: 8.047315e-02	ci left: 2.769225e-03	ci right 3.002601e-03	k: 2365	n:820000
KS ci ratio: 3.837776e-02	ci left: 1.232225e-02	ci right 1.280560e-02	k: 10301	n:820000
ASB5   820000 perm   472 sec   (1738 perm/sec)   p_kst 1.256220e-02   p_cons 2.884146e-03   p_joint 5.780488e-04

Joint ci ratio: 1.786847e-01	ci left: 5.277410e-04	ci right 6.324221e-04	k: 480	n:830000
Cons ci ratio: 7.991755e-02	ci left: 2.774823e-03	ci right 3.006981e-03	k: 2398	n:830000
KS ci ratio: 3.818601e-02	ci left: 1.229788e-02	ci right 1.277782e-02	k: 10405	n:830000
ASB5   830000 perm   481 sec   (1725 perm/sec)   p_kst 1.253614e-02   p_cons 2.889157e-03   p_joint 5.783133e-04

Joint ci ratio: 1.783148e-01	ci left: 5.237328e-04	ci right 6.273806e-04	k: 482	n:840000
Cons ci ratio: 7.938967e-02	ci left: 2.779126e-03	ci right 3.010038e-03	k: 2430	n:840000
KS ci ratio: 3.794594e-02	ci left: 1.230713e-02	ci right 1.278434e-02	k: 10537	n:840000
ASB5   840000 perm   491 sec   (1712 perm/sec)   p_kst 1.254405e-02   p_cons 2.892857e-03   p_joint 5.738095e-04

Joint ci ratio: 1.775812e-01	ci left: 5.220675e-04	ci right 6.249150e-04	k: 486	n:850000
Cons ci ratio: 7.893642e-02	ci left: 2.778719e-03	ci right 3.008219e-03	k: 2458	n:850000
KS ci ratio: 3.771393e-02	ci left: 1.231383e-02	ci right 1.278832e-02	k: 10667	n:850000
ASB5   850000 perm   500 sec   (1699 perm/sec)   p_kst 1.254941e-02   p_cons 2.891765e-03   p_joint 5.717647e-04

Joint ci ratio: 1.759623e-01	ci left: 5.259991e-04	ci right 6.285761e-04	k: 495	n:860000
Cons ci ratio: 7.857010e-02	ci left: 2.772626e-03	ci right 3.000510e-03	k: 2481	n:860000
KS ci ratio: 3.748612e-02	ci left: 1.232039e-02	ci right 1.279220e-02	k: 10797	n:860000
ASB5   860000 perm   510 sec   (1687 perm/sec)   p_kst 1.255465e-02   p_cons 2.884884e-03   p_joint 5.755814e-04

Joint ci ratio: 1.749076e-01	ci left: 5.265469e-04	ci right 6.285501e-04	k: 501	n:870000
Cons ci ratio: 7.803719e-02	ci left: 2.779072e-03	ci right 3.005867e-03	k: 2515	n:870000
KS ci ratio: 3.726756e-02	ci left: 1.232339e-02	ci right 1.279250e-02	k: 10924	n:870000
ASB5   870000 perm   520 sec   (1674 perm/sec)   p_kst 1.255632e-02   p_cons 2.890805e-03   p_joint 5.758621e-04

Joint ci ratio: 1.740431e-01	ci left: 5.259971e-04	ci right 6.273372e-04	k: 506	n:880000
Cons ci ratio: 7.768319e-02	ci left: 2.773119e-03	ci right 2.998355e-03	k: 2538	n:880000
KS ci ratio: 3.704940e-02	ci left: 1.232858e-02	ci right 1.279509e-02	k: 11053	n:880000
ASB5   880000 perm   529 sec   (1662 perm/sec)   p_kst 1.256023e-02   p_cons 2.884091e-03   p_joint 5.750000e-04

Joint ci ratio: 1.731912e-01	ci left: 5.254609e-04	ci right 6.261504e-04	k: 511	n:890000
Cons ci ratio: 7.710791e-02	ci left: 2.783831e-03	ci right 3.008188e-03	k: 2576	n:890000
KS ci ratio: 3.683669e-02	ci left: 1.233255e-02	ci right 1.279647e-02	k: 11181	n:890000
ASB5   890000 perm   539 sec   (1650 perm/sec)   p_kst 1.256292e-02   p_cons 2.894382e-03   p_joint 5.741573e-04

Joint ci ratio: 1.737017e-01	ci left: 5.164336e-04	ci right 6.157155e-04	k: 508	n:900000
Cons ci ratio: 7.666293e-02	ci left: 2.785592e-03	ci right 3.008737e-03	k: 2606	n:900000
KS ci ratio: 3.661940e-02	ci left: 1.234195e-02	ci right 1.280342e-02	k: 11314	n:900000
ASB5   900000 perm   549 sec   (1638 perm/sec)   p_kst 1.257111e-02   p_cons 2.895556e-03   p_joint 5.644444e-04

Joint ci ratio: 2.116201e-01	ci left: 3.370505e-04	ci right 4.178338e-04	k: 342	n:910000
Cons ci ratio: 7.610986e-02	ci left: 2.795943e-03	ci right 3.018229e-03	k: 2644	n:910000
KS ci ratio: 3.641075e-02	ci left: 1.234787e-02	ci right 1.280689e-02	k: 11444	n:910000
ASB5   910000 perm   559 sec   (1627 perm/sec)   p_kst 1.257582e-02   p_cons 2.905495e-03   p_joint 3.758242e-04

Joint ci ratio: 2.103968e-01	ci left: 3.375050e-04	ci right 4.178693e-04	k: 346	n:920000
Cons ci ratio: 7.568183e-02	ci left: 2.797542e-03	ci right 3.018650e-03	k: 2674	n:920000
KS ci ratio: 3.623099e-02	ci left: 1.233644e-02	ci right 1.279272e-02	k: 11558	n:920000
ASB5   920000 perm   569 sec   (1616 perm/sec)   p_kst 1.256304e-02   p_cons 2.906522e-03   p_joint 3.760870e-04

Joint ci ratio: 2.097933e-01	ci left: 3.359133e-04	ci right 4.156397e-04	k: 348	n:930000
Cons ci ratio: 7.530284e-02	ci left: 2.795945e-03	ci right 3.015772e-03	k: 2701	n:930000
KS ci ratio: 3.605699e-02	ci left: 1.232313e-02	ci right 1.277668e-02	k: 11670	n:930000
ASB5   930000 perm   580 sec   (1604 perm/sec)   p_kst 1.254839e-02   p_cons 2.904301e-03   p_joint 3.741935e-04

Joint ci ratio: 2.086013e-01	ci left: 3.363721e-04	ci right 4.156959e-04	k: 352	n:940000
Cons ci ratio: 7.491572e-02	ci left: 2.795428e-03	ci right 3.014036e-03	k: 2729	n:940000
KS ci ratio: 3.587161e-02	ci left: 1.231960e-02	ci right 1.277064e-02	k: 11791	n:940000
ASB5   940000 perm   590 sec   (1593 perm/sec)   p_kst 1.254362e-02   p_cons 2.903191e-03   p_joint 3.744681e-04

Joint ci ratio: 2.080130e-01	ci left: 3.348268e-04	ci right 4.135351e-04	k: 354	n:950000
Cons ci ratio: 7.458877e-02	ci left: 2.790794e-03	ci right 3.008044e-03	k: 2753	n:950000
KS ci ratio: 3.568299e-02	ci left: 1.232032e-02	ci right 1.276897e-02	k: 11916	n:950000
ASB5   950000 perm   601 sec   (1582 perm/sec)   p_kst 1.254316e-02   p_cons 2.897895e-03   p_joint 3.726316e-04

Joint ci ratio: 2.071397e-01	ci left: 3.343016e-04	ci right 4.125147e-04	k: 357	n:960000
Cons ci ratio: 7.426607e-02	ci left: 2.786257e-03	ci right 3.002176e-03	k: 2777	n:960000
KS ci ratio: 3.551823e-02	ci left: 1.230658e-02	ci right 1.275262e-02	k: 12027	n:960000
ASB5   960000 perm   611 sec   (1571 perm/sec)   p_kst 1.252812e-02   p_cons 2.892708e-03   p_joint 3.718750e-04

Joint ci ratio: 2.062773e-01	ci left: 3.337878e-04	ci right 4.115146e-04	k: 360	n:970000
Cons ci ratio: 7.378922e-02	ci left: 2.793960e-03	ci right 3.009026e-03	k: 2813	n:970000
KS ci ratio: 3.533804e-02	ci left: 1.230539e-02	ci right 1.274907e-02	k: 12150	n:970000
ASB5   970000 perm   622 sec   (1560 perm/sec)   p_kst 1.252577e-02   p_cons 2.900000e-03   p_joint 3.711340e-04

Joint ci ratio: 2.043057e-01	ci left: 3.371576e-04	ci right 4.148249e-04	k: 367	n:980000
Cons ci ratio: 7.334726e-02	ci left: 2.799506e-03	ci right 3.013653e-03	k: 2847	n:980000
KS ci ratio: 3.515767e-02	ci left: 1.230625e-02	ci right 1.274766e-02	k: 12275	n:980000
ASB5   980000 perm   632 sec   (1549 perm/sec)   p_kst 1.252551e-02   p_cons 2.905102e-03   p_joint 3.744898e-04

Joint ci ratio: 2.032042e-01	ci left: 3.375862e-04	ci right 4.148810e-04	k: 371	n:990000
Cons ci ratio: 7.305309e-02	ci left: 2.794035e-03	ci right 3.006870e-03	k: 2870	n:990000
KS ci ratio: 3.500005e-02	ci left: 1.229308e-02	ci right 1.273200e-02	k: 12386	n:990000
ASB5   990000 perm   643 sec   (1539 perm/sec)   p_kst 1.251111e-02   p_cons 2.898990e-03   p_joint 3.747475e-04

Joint ci ratio: 2.018521e-01	ci left: 3.389568e-04	ci right 4.159854e-04	k: 376	n:1000000
Cons ci ratio: 7.281292e-02	ci left: 2.784747e-03	ci right 2.996148e-03	k: 2889	n:1000000
KS ci ratio: 3.484312e-02	ci left: 1.228117e-02	ci right 1.271766e-02	k: 12498	n:1000000
ASB5   1000000 perm   654 sec   (1529 perm/sec)   p_kst 1.249800e-02   p_cons 2.889000e-03   p_joint 3.760000e-04

Joint ci ratio: 2.015852e-01	ci left: 3.365409e-04	ci right 4.129069e-04	k: 377	n:1010000
Cons ci ratio: 7.255010e-02	ci left: 2.777590e-03	ci right 2.987654e-03	k: 2910	n:1010000
KS ci ratio: 3.466184e-02	ci left: 1.228815e-02	ci right 1.272257e-02	k: 12629	n:1010000
ASB5   1010000 perm   665 sec   (1519 perm/sec)   p_kst 1.250396e-02   p_cons 2.881188e-03   p_joint 3.732673e-04

Joint ci ratio: 2.007901e-01	ci left: 3.360345e-04	ci right 4.119479e-04	k: 380	n:1020000
Cons ci ratio: 7.209308e-02	ci left: 2.785977e-03	ci right 2.995293e-03	k: 2947	n:1020000
KS ci ratio: 3.449158e-02	ci left: 1.228917e-02	ci right 1.272145e-02	k: 12754	n:1020000
ASB5   1020000 perm   676 sec   (1509 perm/sec)   p_kst 1.250392e-02   p_cons 2.889216e-03   p_joint 3.725490e-04

Joint ci ratio: 1.997443e-01	ci left: 3.364608e-04	ci right 4.120264e-04	k: 384	n:1030000
Cons ci ratio: 7.160852e-02	ci left: 2.797067e-03	ci right 3.005744e-03	k: 2987	n:1030000
KS ci ratio: 3.430762e-02	ci left: 1.230173e-02	ci right 1.273209e-02	k: 12891	n:1030000
ASB5   1030000 perm   687 sec   (1499 perm/sec)   p_kst 1.251553e-02   p_cons 2.900000e-03   p_joint 3.728155e-04

Joint ci ratio: 1.979525e-01	ci left: 3.396213e-04	ci right 4.151299e-04	k: 391	n:1040000
Cons ci ratio: 7.125169e-02	ci left: 2.798503e-03	ci right 3.006204e-03	k: 3017	n:1040000
KS ci ratio: 3.414250e-02	ci left: 1.230260e-02	ci right 1.273089e-02	k: 13016	n:1040000
ASB5   1040000 perm   698 sec   (1489 perm/sec)   p_kst 1.251538e-02   p_cons 2.900962e-03   p_joint 3.759615e-04

Joint ci ratio: 1.964545e-01	ci left: 3.418190e-04	ci right 4.171723e-04	k: 397	n:1050000
Cons ci ratio: 7.083026e-02	ci left: 2.805527e-03	ci right 3.012468e-03	k: 3053	n:1050000
KS ci ratio: 3.397975e-02	ci left: 1.230347e-02	ci right 1.272970e-02	k: 13141	n:1050000
ASB5   1050000 perm   710 sec   (1479 perm/sec)   p_kst 1.251524e-02   p_cons 2.907619e-03   p_joint 3.780952e-04

Joint ci ratio: 1.994863e-01	ci left: 3.278344e-04	ci right 4.013559e-04	k: 385	n:1060000
Cons ci ratio: 7.034775e-02	ci left: 2.817984e-03	ci right 3.024370e-03	k: 3095	n:1060000
KS ci ratio: 3.383092e-02	ci left: 1.229591e-02	ci right 1.271997e-02	k: 13257	n:1060000
ASB5   1060000 perm   721 sec   (1470 perm/sec)   p_kst 1.250660e-02   p_cons 2.919811e-03   p_joint 3.632075e-04

Joint ci ratio: 1.989717e-01	ci left: 3.265464e-04	ci right 3.995673e-04	k: 387	n:1070000
Cons ci ratio: 7.000935e-02	ci left: 2.819193e-03	ci right 3.024634e-03	k: 3125	n:1070000
KS ci ratio: 3.369040e-02	ci left: 1.228385e-02	ci right 1.270571e-02	k: 13368	n:1070000
ASB5   1070000 perm   733 sec   (1460 perm/sec)   p_kst 1.249346e-02   p_cons 2.920561e-03   p_joint 3.616822e-04

Joint ci ratio: 1.735394e-01	ci left: 4.312453e-04	ci right 5.140646e-04	k: 509	n:1080000
Cons ci ratio: 6.964260e-02	ci left: 2.823112e-03	ci right 3.027717e-03	k: 3158	n:1080000
KS ci ratio: 3.356802e-02	ci left: 1.226009e-02	ci right 1.267957e-02	k: 13466	n:1080000
ASB5   1080000 perm   744 sec   (1451 perm/sec)   p_kst 1.246852e-02   p_cons 2.924074e-03   p_joint 4.712963e-04

Joint ci ratio: 1.728629e-01	ci left: 4.307996e-04	ci right 5.131771e-04	k: 513	n:1090000
Cons ci ratio: 6.929244e-02	ci left: 2.826060e-03	ci right 3.029807e-03	k: 3190	n:1090000
KS ci ratio: 3.342576e-02	ci left: 1.225223e-02	ci right 1.266963e-02	k: 13581	n:1090000
ASB5   1090000 perm   756 sec   (1442 perm/sec)   p_kst 1.245963e-02   p_cons 2.926606e-03   p_joint 4.706422e-04

Joint ci ratio: 1.720282e-01	ci left: 4.312325e-04	ci right 5.132533e-04	k: 518	n:1100000
Cons ci ratio: 6.897971e-02	ci left: 2.826276e-03	ci right 3.029083e-03	k: 3219	n:1100000
KS ci ratio: 3.328898e-02	ci left: 1.224181e-02	ci right 1.265712e-02	k: 13693	n:1100000
ASB5   1100000 perm   768 sec   (1433 perm/sec)   p_kst 1.244818e-02   p_cons 2.926364e-03   p_joint 4.709091e-04

Joint ci ratio: 1.708795e-01	ci left: 4.333833e-04	ci right 5.152060e-04	k: 525	n:1110000
Cons ci ratio: 6.866058e-02	ci left: 2.827376e-03	ci right 3.029286e-03	k: 3249	n:1110000
KS ci ratio: 3.315265e-02	ci left: 1.223248e-02	ci right 1.264574e-02	k: 13806	n:1110000
ASB5   1110000 perm   780 sec   (1424 perm/sec)   p_kst 1.243784e-02   p_cons 2.927027e-03   p_joint 4.729730e-04

Joint ci ratio: 1.725285e-01	ci left: 4.209686e-04	ci right 5.012943e-04	k: 515	n:1120000
Cons ci ratio: 6.838768e-02	ci left: 2.824948e-03	ci right 3.025850e-03	k: 3275	n:1120000
KS ci ratio: 3.298201e-02	ci left: 1.224989e-02	ci right 1.266157e-02	k: 13949	n:1120000
ASB5   1120000 perm   792 sec   (1415 perm/sec)   p_kst 1.245446e-02   p_cons 2.924107e-03   p_joint 4.598214e-04

Joint ci ratio: 1.715340e-01	ci left: 4.223244e-04	ci right 5.023962e-04	k: 521	n:1130000
Cons ci ratio: 6.802508e-02	ci left: 2.830394e-03	ci right 3.030574e-03	k: 3310	n:1130000
KS ci ratio: 3.283522e-02	ci left: 1.225119e-02	ci right 1.266105e-02	k: 14074	n:1130000
ASB5   1130000 perm   804 sec   (1406 perm/sec)   p_kst 1.245487e-02   p_cons 2.929204e-03   p_joint 4.610619e-04

Joint ci ratio: 1.702343e-01	ci left: 4.253373e-04	ci right 5.053065e-04	k: 529	n:1140000
Cons ci ratio: 6.778003e-02	ci left: 2.826261e-03	ci right 3.025401e-03	k: 3334	n:1140000
KS ci ratio: 3.266476e-02	ci left: 1.227162e-02	ci right 1.267999e-02	k: 14221	n:1140000
ASB5   1140000 perm   816 sec   (1397 perm/sec)   p_kst 1.247456e-02   p_cons 2.924561e-03   p_joint 4.640351e-04

Joint ci ratio: 1.697546e-01	ci left: 4.241364e-04	ci right 5.036322e-04	k: 532	n:1150000
Cons ci ratio: 6.747720e-02	ci left: 2.827331e-03	ci right 3.025621e-03	k: 3364	n:1150000
KS ci ratio: 3.251297e-02	ci left: 1.227962e-02	ci right 1.268632e-02	k: 14354	n:1150000
ASB5   1150000 perm   828 sec   (1389 perm/sec)   p_kst 1.248174e-02   p_cons 2.925217e-03   p_joint 4.626087e-04

Joint ci ratio: 1.692790e-01	ci left: 4.229565e-04	ci right 5.019864e-04	k: 535	n:1160000
Cons ci ratio: 6.717838e-02	ci left: 2.828384e-03	ci right 3.025835e-03	k: 3394	n:1160000
KS ci ratio: 3.234745e-02	ci left: 1.229946e-02	ci right 1.270470e-02	k: 14501	n:1160000
ASB5   1160000 perm   840 sec   (1381 perm/sec)   p_kst 1.250086e-02   p_cons 2.925862e-03   p_joint 4.612069e-04

Joint ci ratio: 1.686509e-01	ci left: 4.226157e-04	ci right 5.012591e-04	k: 539	n:1170000
Cons ci ratio: 6.695215e-02	ci left: 2.823538e-03	ci right 3.019961e-03	k: 3417	n:1170000
KS ci ratio: 3.220337e-02	ci left: 1.230455e-02	ci right 1.270812e-02	k: 14631	n:1170000
ASB5   1170000 perm   853 sec   (1372 perm/sec)   p_kst 1.250513e-02   p_cons 2.920513e-03   p_joint 4.606838e-04

Joint ci ratio: 1.677216e-01	ci left: 4.239050e-04	ci right 5.023097e-04	k: 545	n:1180000
Cons ci ratio: 6.673792e-02	ci left: 2.817942e-03	ci right 3.013324e-03	k: 3439	n:1180000
KS ci ratio: 3.207109e-02	ci left: 1.230199e-02	ci right 1.270379e-02	k: 14752	n:1180000
ASB5   1180000 perm   865 sec   (1364 perm/sec)   p_kst 1.250169e-02   p_cons 2.914407e-03   p_joint 4.618644e-04

Joint ci ratio: 1.666565e-01	ci left: 4.259790e-04	ci right 5.042168e-04	k: 552	n:1190000
Cons ci ratio: 6.649685e-02	ci left: 2.814920e-03	ci right 3.009361e-03	k: 3464	n:1190000
KS ci ratio: 3.192413e-02	ci left: 1.231199e-02	ci right 1.271224e-02	k: 14888	n:1190000
ASB5   1190000 perm   877 sec   (1357 perm/sec)   p_kst 1.251092e-02   p_cons 2.910924e-03   p_joint 4.638655e-04

Joint ci ratio: 1.657596e-01	ci left: 4.272212e-04	ci right 5.052228e-04	k: 558	n:1200000
Cons ci ratio: 6.625837e-02	ci left: 2.811950e-03	ci right 3.005462e-03	k: 3489	n:1200000
KS ci ratio: 3.178989e-02	ci left: 1.231355e-02	ci right 1.271214e-02	k: 15014	n:1200000
ASB5   1200000 perm   890 sec   (1349 perm/sec)   p_kst 1.251167e-02   p_cons 2.907500e-03   p_joint 4.650000e-04

Joint ci ratio: 1.644409e-01	ci left: 4.308212e-04	ci right 5.087924e-04	k: 567	n:1210000
Cons ci ratio: 6.599419e-02	ci left: 2.811468e-03	ci right 3.004147e-03	k: 3517	n:1210000
KS ci ratio: 3.165098e-02	ci left: 1.232001e-02	ci right 1.271704e-02	k: 15146	n:1210000
ASB5   1210000 perm   902 sec   (1341 perm/sec)   p_kst 1.251736e-02   p_cons 2.906612e-03   p_joint 4.685950e-04

Joint ci ratio: 1.638649e-01	ci left: 4.304339e-04	ci right 5.080352e-04	k: 571	n:1220000
Cons ci ratio: 6.576106e-02	ci left: 2.808577e-03	ci right 3.000352e-03	k: 3542	n:1220000
KS ci ratio: 3.152850e-02	ci left: 1.231499e-02	ci right 1.271028e-02	k: 15264	n:1220000
ASB5   1220000 perm   915 sec   (1333 perm/sec)   p_kst 1.251148e-02   p_cons 2.903279e-03   p_joint 4.680328e-04

Joint ci ratio: 1.625905e-01	ci left: 4.339527e-04	ci right 5.115205e-04	k: 580	n:1230000
Cons ci ratio: 6.549357e-02	ci left: 2.808934e-03	ci right 2.999923e-03	k: 3571	n:1230000
KS ci ratio: 3.138369e-02	ci left: 1.232860e-02	ci right 1.272248e-02	k: 15405	n:1230000
ASB5   1230000 perm   928 sec   (1325 perm/sec)   p_kst 1.252439e-02   p_cons 2.903252e-03   p_joint 4.715447e-04

Joint ci ratio: 1.628715e-01	ci left: 4.289058e-04	ci right 5.057169e-04	k: 578	n:1240000
Cons ci ratio: 6.517488e-02	ci left: 2.814046e-03	ci right 3.004417e-03	k: 3606	n:1240000
KS ci ratio: 3.126122e-02	ci left: 1.232599e-02	ci right 1.271823e-02	k: 15526	n:1240000
ASB5   1240000 perm   941 sec   (1318 perm/sec)   p_kst 1.252097e-02   p_cons 2.908065e-03   p_joint 4.661290e-04

Joint ci ratio: 1.621728e-01	ci left: 4.293118e-04	ci right 5.058337e-04	k: 583	n:1250000
Cons ci ratio: 6.491445e-02	ci left: 2.814356e-03	ci right 3.003958e-03	k: 3635	n:1250000
KS ci ratio: 3.111199e-02	ci left: 1.234566e-02	ci right 1.273661e-02	k: 15675	n:1250000
ASB5   1250000 perm   954 sec   (1310 perm/sec)   p_kst 1.254000e-02   p_cons 2.908000e-03   p_joint 4.664000e-04

Joint ci ratio: 1.614830e-01	ci left: 4.297122e-04	ci right 5.059480e-04	k: 588	n:1260000
Cons ci ratio: 6.464828e-02	ci left: 2.815444e-03	ci right 3.004313e-03	k: 3665	n:1260000
KS ci ratio: 3.096489e-02	ci left: 1.236501e-02	ci right 1.275469e-02	k: 15824	n:1260000
ASB5   1260000 perm   968 sec   (1302 perm/sec)   p_kst 1.255873e-02   p_cons 2.908730e-03   p_joint 4.666667e-04

Joint ci ratio: 1.601290e-01	ci left: 4.338858e-04	ci right 5.101546e-04	k: 598	n:1270000
Cons ci ratio: 6.425471e-02	ci left: 2.828138e-03	ci right 3.016660e-03	k: 3710	n:1270000
KS ci ratio: 3.083843e-02	ci left: 1.236922e-02	ci right 1.275742e-02	k: 15954	n:1270000
ASB5   1270000 perm   981 sec   (1295 perm/sec)   p_kst 1.256220e-02   p_cons 2.921260e-03   p_joint 4.708661e-04

Joint ci ratio: 1.597296e-01	ci left: 4.327460e-04	ci right 5.086065e-04	k: 601	n:1280000
Cons ci ratio: 6.407388e-02	ci left: 2.822186e-03	ci right 3.009762e-03	k: 3731	n:1280000
KS ci ratio: 3.072995e-02	ci left: 1.236019e-02	ci right 1.274671e-02	k: 16067	n:1280000
ASB5   1280000 perm   994 sec   (1287 perm/sec)   p_kst 1.255234e-02   p_cons 2.914844e-03   p_joint 4.695313e-04

Joint ci ratio: 1.588089e-01	ci left: 4.346015e-04	ci right 5.103063e-04	k: 608	n:1290000
Cons ci ratio: 6.377538e-02	ci left: 2.827007e-03	ci right 3.013996e-03	k: 3766	n:1290000
KS ci ratio: 3.059104e-02	ci left: 1.237668e-02	ci right 1.276194e-02	k: 16213	n:1290000
ASB5   1290000 perm   1007 sec   (1280 perm/sec)   p_kst 1.256822e-02   p_cons 2.919380e-03   p_joint 4.713178e-04

Joint ci ratio: 1.580322e-01	ci left: 4.356909e-04	ci right 5.111790e-04	k: 614	n:1300000
Cons ci ratio: 6.361540e-02	ci left: 2.819643e-03	ci right 3.005660e-03	k: 3785	n:1300000
KS ci ratio: 3.045399e-02	ci left: 1.239293e-02	ci right 1.277694e-02	k: 16359	n:1300000
ASB5   1300000 perm   1021 sec   (1273 perm/sec)   p_kst 1.258385e-02   p_cons 2.911538e-03   p_joint 4.723077e-04

Joint ci ratio: 1.571403e-01	ci left: 4.374978e-04	ci right 5.128309e-04	k: 621	n:1310000
Cons ci ratio: 6.328172e-02	ci left: 2.828169e-03	ci right 3.013734e-03	k: 3825	n:1310000
KS ci ratio: 3.035044e-02	ci left: 1.238317e-02	ci right 1.276555e-02	k: 16471	n:1310000
ASB5   1310000 perm   1035 sec   (1266 perm/sec)   p_kst 1.257328e-02   p_cons 2.919847e-03   p_joint 4.740458e-04

Joint ci ratio: 1.566375e-01	ci left: 4.370948e-04	ci right 5.120950e-04	k: 625	n:1320000
Cons ci ratio: 6.305146e-02	ci left: 2.827621e-03	ci right 3.012450e-03	k: 3853	n:1320000
KS ci ratio: 3.022396e-02	ci left: 1.239312e-02	ci right 1.277418e-02	k: 16609	n:1320000
ASB5   1320000 perm   1048 sec   (1259 perm/sec)   p_kst 1.258258e-02   p_cons 2.918939e-03   p_joint 4.734848e-04

Joint ci ratio: 1.560157e-01	ci left: 4.374207e-04	ci right 5.121510e-04	k: 630	n:1330000
Cons ci ratio: 6.276695e-02	ci left: 2.832262e-03	ci right 3.016529e-03	k: 3888	n:1330000
KS ci ratio: 3.009813e-02	ci left: 1.240366e-02	ci right 1.278343e-02	k: 16748	n:1330000
ASB5   1330000 perm   1062 sec   (1252 perm/sec)   p_kst 1.259248e-02   p_cons 2.923308e-03   p_joint 4.736842e-04

Joint ci ratio: 1.556462e-01	ci left: 4.363078e-04	ci right 5.106550e-04	k: 633	n:1340000
Cons ci ratio: 6.261443e-02	ci left: 2.825083e-03	ci right 3.008420e-03	k: 3907	n:1340000
KS ci ratio: 2.997117e-02	ci left: 1.241627e-02	ci right 1.279480e-02	k: 16890	n:1340000
ASB5   1340000 perm   1076 sec   (1245 perm/sec)   p_kst 1.260448e-02   p_cons 2.915672e-03   p_joint 4.723881e-04

Joint ci ratio: 1.549148e-01	ci left: 4.373477e-04	ci right 5.114894e-04	k: 639	n:1350000
Cons ci ratio: 6.239929e-02	ci left: 2.823844e-03	ci right 3.006448e-03	k: 3934	n:1350000
KS ci ratio: 2.985201e-02	ci left: 1.242355e-02	ci right 1.280077e-02	k: 17025	n:1350000
ASB5   1350000 perm   1090 sec   (1239 perm/sec)   p_kst 1.261111e-02   p_cons 2.914074e-03   p_joint 4.733333e-04

Joint ci ratio: 1.546735e-01	ci left: 4.355455e-04	ci right 5.092560e-04	k: 641	n:1360000
Cons ci ratio: 6.213134e-02	ci left: 2.827691e-03	ci right 3.009730e-03	k: 3968	n:1360000
KS ci ratio: 2.974655e-02	ci left: 1.242051e-02	ci right 1.279628e-02	k: 17146	n:1360000
ASB5   1360000 perm   1104 sec   (1232 perm/sec)   p_kst 1.260735e-02   p_cons 2.917647e-03   p_joint 4.713235e-04

Joint ci ratio: 1.540747e-01	ci left: 4.358750e-04	ci right 5.093293e-04	k: 646	n:1370000
Cons ci ratio: 6.188231e-02	ci left: 2.830046e-03	ci right 3.011481e-03	k: 4000	n:1370000
KS ci ratio: 2.962483e-02	ci left: 1.243201e-02	ci right 1.280656e-02	k: 17287	n:1370000
ASB5   1370000 perm   1118 sec   (1225 perm/sec)   p_kst 1.261825e-02   p_cons 2.919708e-03   p_joint 4.715328e-04

Joint ci ratio: 1.539559e-01	ci left: 4.334132e-04	ci right 5.063911e-04	k: 647	n:1380000
Cons ci ratio: 6.162860e-02	ci left: 2.833083e-03	ci right 3.013941e-03	k: 4033	n:1380000
KS ci ratio: 2.950631e-02	ci left: 1.244190e-02	ci right 1.281522e-02	k: 17426	n:1380000
ASB5   1380000 perm   1132 sec   (1219 perm/sec)   p_kst 1.262754e-02   p_cons 2.922464e-03   p_joint 4.688406e-04

Joint ci ratio: 1.534830e-01	ci left: 4.330621e-04	ci right 5.057363e-04	k: 651	n:1390000
Cons ci ratio: 6.136284e-02	ci left: 2.837494e-03	ci right 3.017825e-03	k: 4068	n:1390000
KS ci ratio: 2.940192e-02	ci left: 1.244094e-02	ci right 1.281289e-02	k: 17550	n:1390000
ASB5   1390000 perm   1147 sec   (1212 perm/sec)   p_kst 1.262590e-02   p_cons 2.926619e-03   p_joint 4.683453e-04

Joint ci ratio: 1.525498e-01	ci left: 4.354643e-04	ci right 5.080568e-04	k: 659	n:1400000
Cons ci ratio: 6.116031e-02	ci left: 2.836216e-03	ci right 3.015850e-03	k: 4095	n:1400000
KS ci ratio: 2.929359e-02	ci left: 1.244425e-02	ci right 1.281491e-02	k: 17680	n:1400000
ASB5   1400000 perm   1161 sec   (1206 perm/sec)   p_kst 1.262857e-02   p_cons 2.925000e-03   p_joint 4.707143e-04

Joint ci ratio: 1.519752e-01	ci left: 4.357869e-04	ci right 5.081346e-04	k: 664	n:1410000
Cons ci ratio: 6.096719e-02	ci left: 2.834259e-03	ci right 3.013182e-03	k: 4121	n:1410000
KS ci ratio: 2.919642e-02	ci left: 1.243907e-02	ci right 1.280832e-02	k: 17798	n:1410000
ASB5   1410000 perm   1175 sec   (1200 perm/sec)   p_kst 1.262270e-02   p_cons 2.922695e-03   p_joint 4.709220e-04

Joint ci ratio: 1.510690e-01	ci left: 4.381382e-04	ci right 5.104034e-04	k: 672	n:1420000
Cons ci ratio: 6.074652e-02	ci left: 2.835105e-03	ci right 3.013411e-03	k: 4151	n:1420000
KS ci ratio: 2.909938e-02	ci left: 1.243466e-02	ci right 1.280254e-02	k: 17917	n:1420000
ASB5   1420000 perm   1190 sec   (1193 perm/sec)   p_kst 1.261761e-02   p_cons 2.923239e-03   p_joint 4.732394e-04

Joint ci ratio: 1.505109e-01	ci left: 4.384389e-04	ci right 5.104625e-04	k: 677	n:1430000
Cons ci ratio: 6.045577e-02	ci left: 2.842828e-03	ci right 3.020733e-03	k: 4191	n:1430000
KS ci ratio: 2.898947e-02	ci left: 1.244212e-02	ci right 1.280881e-02	k: 18053	n:1430000
ASB5   1430000 perm   1204 sec   (1187 perm/sec)   p_kst 1.262448e-02   p_cons 2.930769e-03   p_joint 4.734266e-04

Joint ci ratio: 1.538387e-01	ci left: 4.160217e-04	ci right 4.860130e-04	k: 648	n:1440000
Cons ci ratio: 6.026923e-02	ci left: 2.840869e-03	ci right 3.018084e-03	k: 4217	n:1440000
KS ci ratio: 2.888562e-02	ci left: 1.244534e-02	ci right 1.281079e-02	k: 18183	n:1440000
ASB5   1440000 perm   1219 sec   (1181 perm/sec)   p_kst 1.262708e-02   p_cons 2.928472e-03   p_joint 4.500000e-04

Joint ci ratio: 1.536024e-01	ci left: 4.144788e-04	ci right 4.840935e-04	k: 650	n:1450000
Cons ci ratio: 6.002768e-02	ci left: 2.844372e-03	ci right 3.021071e-03	k: 4251	n:1450000
KS ci ratio: 2.878447e-02	ci left: 1.244715e-02	ci right 1.281135e-02	k: 18311	n:1450000
ASB5   1450000 perm   1234 sec   (1175 perm/sec)   p_kst 1.262828e-02   p_cons 2.931724e-03   p_joint 4.482759e-04

Joint ci ratio: 1.534847e-01	ci left: 4.122985e-04	ci right 4.814891e-04	k: 651	n:1460000
Cons ci ratio: 5.985208e-02	ci left: 2.841757e-03	ci right 3.017758e-03	k: 4276	n:1460000
KS ci ratio: 2.869778e-02	ci left: 1.243738e-02	ci right 1.280017e-02	k: 18422	n:1460000
ASB5   1460000 perm   1249 sec   (1169 perm/sec)   p_kst 1.261781e-02   p_cons 2.928767e-03   p_joint 4.458904e-04

Joint ci ratio: 1.532500e-01	ci left: 4.108020e-04	ci right 4.796264e-04	k: 653	n:1470000
Cons ci ratio: 5.961550e-02	ci left: 2.845209e-03	ci right 3.020704e-03	k: 4310	n:1470000
KS ci ratio: 2.859936e-02	ci left: 1.243855e-02	ci right 1.280011e-02	k: 18549	n:1470000
ASB5   1470000 perm   1264 sec   (1163 perm/sec)   p_kst 1.261837e-02   p_cons 2.931973e-03   p_joint 4.442177e-04

Joint ci ratio: 1.524362e-01	ci left: 4.125752e-04	ci right 4.812961e-04	k: 660	n:1480000
Cons ci ratio: 5.941599e-02	ci left: 2.845288e-03	ci right 3.020180e-03	k: 4339	n:1480000
KS ci ratio: 2.848882e-02	ci left: 1.245111e-02	ci right 1.281161e-02	k: 18693	n:1480000
ASB5   1480000 perm   1279 sec   (1157 perm/sec)   p_kst 1.263041e-02   p_cons 2.931757e-03   p_joint 4.459459e-04

Joint ci ratio: 1.515219e-01	ci left: 4.149713e-04	ci right 4.836391e-04	k: 668	n:1490000
Cons ci ratio: 5.923888e-02	ci left: 2.843383e-03	ci right 3.017619e-03	k: 4365	n:1490000
KS ci ratio: 2.839712e-02	ci left: 1.244817e-02	ci right 1.280742e-02	k: 18814	n:1490000
ASB5   1490000 perm   1294 sec   (1151 perm/sec)   p_kst 1.262685e-02   p_cons 2.929530e-03   p_joint 4.483221e-04

Joint ci ratio: 1.514089e-01	ci left: 4.128461e-04	ci right 4.811068e-04	k: 669	n:1500000
Cons ci ratio: 5.902965e-02	ci left: 2.844788e-03	ci right 3.018474e-03	k: 4396	n:1500000
KS ci ratio: 2.831008e-02	ci left: 1.244197e-02	ci right 1.279992e-02	k: 18930	n:1500000
ASB5   1500000 perm   1309 sec   (1146 perm/sec)   p_kst 1.262000e-02   p_cons 2.930667e-03   p_joint 4.460000e-04

Joint ci ratio: 1.508471e-01	ci left: 4.132981e-04	ci right 4.813570e-04	k: 674	n:1510000
Cons ci ratio: 5.888267e-02	ci left: 2.840303e-03	ci right 3.013268e-03	k: 4418	n:1510000
KS ci ratio: 2.822684e-02	ci left: 1.243322e-02	ci right 1.278985e-02	k: 19042	n:1510000
ASB5   1510000 perm   1325 sec   (1140 perm/sec)   p_kst 1.261060e-02   p_cons 2.925828e-03   p_joint 4.463576e-04

Joint ci ratio: 1.500708e-01	ci left: 4.150110e-04	ci right 4.829687e-04	k: 681	n:1520000
Cons ci ratio: 5.863095e-02	ci left: 2.846250e-03	ci right 3.018811e-03	k: 4456	n:1520000
KS ci ratio: 2.813169e-02	ci left: 1.243569e-02	ci right 1.279117e-02	k: 19171	n:1520000
ASB5   1520000 perm   1341 sec   (1134 perm/sec)   p_kst 1.261250e-02   p_cons 2.931579e-03   p_joint 4.480263e-04

Joint ci ratio: 1.496327e-01	ci left: 4.148148e-04	ci right 4.825243e-04	k: 685	n:1530000
Cons ci ratio: 5.842808e-02	ci left: 2.847612e-03	ci right 3.019638e-03	k: 4487	n:1530000
KS ci ratio: 2.803676e-02	ci left: 1.243879e-02	ci right 1.279313e-02	k: 19301	n:1530000
ASB5   1530000 perm   1356 sec   (1128 perm/sec)   p_kst 1.261503e-02   p_cons 2.932680e-03   p_joint 4.477124e-04

Joint ci ratio: 1.488749e-01	ci left: 4.164970e-04	ci right 4.841061e-04	k: 692	n:1540000
Cons ci ratio: 5.822730e-02	ci left: 2.848957e-03	ci right 3.020453e-03	k: 4518	n:1540000
KS ci ratio: 2.794133e-02	ci left: 1.244313e-02	ci right 1.279637e-02	k: 19433	n:1540000
ASB5   1540000 perm   1372 sec   (1123 perm/sec)   p_kst 1.261883e-02   p_cons 2.933766e-03   p_joint 4.493506e-04

Joint ci ratio: 1.481286e-01	ci left: 4.181582e-04	ci right 4.856666e-04	k: 699	n:1550000
Cons ci ratio: 5.808621e-02	ci left: 2.844564e-03	ci right 3.015367e-03	k: 4540	n:1550000
KS ci ratio: 2.784182e-02	ci left: 1.245190e-02	ci right 1.280411e-02	k: 19572	n:1550000
ASB5   1550000 perm   1388 sec   (1117 perm/sec)   p_kst 1.262710e-02   p_cons 2.929032e-03   p_joint 4.509677e-04

Joint ci ratio: 1.504030e-01	ci left: 4.025187e-04	ci right 4.685898e-04	k: 678	n:1560000
Cons ci ratio: 5.787623e-02	ci left: 2.847176e-03	ci right 3.017498e-03	k: 4573	n:1560000
KS ci ratio: 2.775764e-02	ci left: 1.244783e-02	ci right 1.279885e-02	k: 19691	n:1560000
ASB5   1560000 perm   1403 sec   (1112 perm/sec)   p_kst 1.262244e-02   p_cons 2.931410e-03   p_joint 4.346154e-04

Joint ci ratio: 1.499620e-01	ci left: 4.024069e-04	ci right 4.682486e-04	k: 682	n:1570000
Cons ci ratio: 5.772508e-02	ci left: 2.844107e-03	ci right 3.013786e-03	k: 4597	n:1570000
KS ci ratio: 2.766785e-02	ci left: 1.244951e-02	ci right 1.279942e-02	k: 19819	n:1570000
ASB5   1570000 perm   1419 sec   (1106 perm/sec)   p_kst 1.262357e-02   p_cons 2.928025e-03   p_joint 4.343949e-04

Joint ci ratio: 1.491992e-01	ci left: 4.041246e-04	ci right 4.698810e-04	k: 689	n:1580000
Cons ci ratio: 5.750030e-02	ci left: 2.848563e-03	ci right 3.017824e-03	k: 4633	n:1580000
KS ci ratio: 2.757892e-02	ci left: 1.245117e-02	ci right 1.279999e-02	k: 19947	n:1580000
ASB5   1580000 perm   1436 sec   (1101 perm/sec)   p_kst 1.262468e-02   p_cons 2.932278e-03   p_joint 4.360759e-04

Joint ci ratio: 1.487686e-01	ci left: 4.040049e-04	ci right 4.695352e-04	k: 693	n:1590000
Cons ci ratio: 5.731506e-02	ci left: 2.849245e-03	ci right 3.017983e-03	k: 4663	n:1590000
KS ci ratio: 2.749709e-02	ci left: 1.244719e-02	ci right 1.279484e-02	k: 20066	n:1590000
ASB5   1590000 perm   1452 sec   (1095 perm/sec)   p_kst 1.262013e-02   p_cons 2.932704e-03   p_joint 4.358491e-04

Joint ci ratio: 1.486617e-01	ci left: 4.020816e-04	ci right 4.672489e-04	k: 694	n:1600000
Cons ci ratio: 5.714381e-02	ci left: 2.848687e-03	ci right 3.016871e-03	k: 4691	n:1600000
KS ci ratio: 2.739743e-02	ci left: 1.246002e-02	ci right 1.280675e-02	k: 20212	n:1600000
ASB5   1600000 perm   1468 sec   (1090 perm/sec)   p_kst 1.263250e-02   p_cons 2.931875e-03   p_joint 4.337500e-04

Joint ci ratio: 1.484484e-01	ci left: 4.007802e-04	ci right 4.656351e-04	k: 696	n:1610000
Cons ci ratio: 5.693781e-02	ci left: 2.851810e-03	ci right 3.019551e-03	k: 4725	n:1610000
KS ci ratio: 2.732196e-02	ci left: 1.245172e-02	ci right 1.279724e-02	k: 20324	n:1610000
ASB5   1610000 perm   1484 sec   (1085 perm/sec)   p_kst 1.262360e-02   p_cons 2.934783e-03   p_joint 4.322981e-04

Joint ci ratio: 1.476036e-01	ci left: 4.030617e-04	ci right 4.678818e-04	k: 704	n:1620000
Cons ci ratio: 5.674597e-02	ci left: 2.853679e-03	ci right 3.020946e-03	k: 4757	n:1620000
KS ci ratio: 2.723834e-02	ci left: 1.245149e-02	ci right 1.279594e-02	k: 20449	n:1620000
ASB5   1620000 perm   1501 sec   (1079 perm/sec)   p_kst 1.262284e-02   p_cons 2.936420e-03   p_joint 4.345679e-04

Joint ci ratio: 1.468761e-01	ci left: 4.047252e-04	ci right 4.694640e-04	k: 711	n:1630000
Cons ci ratio: 5.655606e-02	ci left: 2.855525e-03	ci right 3.022322e-03	k: 4789	n:1630000
KS ci ratio: 2.715883e-02	ci left: 1.244822e-02	ci right 1.279155e-02	k: 20569	n:1630000
ASB5   1630000 perm   1517 sec   (1074 perm/sec)   p_kst 1.261902e-02   p_cons 2.938037e-03   p_joint 4.361963e-04

Joint ci ratio: 1.464653e-01	ci left: 4.046069e-04	ci right 4.691298e-04	k: 715	n:1640000
Cons ci ratio: 5.639150e-02	ci left: 2.854945e-03	ci right 3.021208e-03	k: 4817	n:1640000
KS ci ratio: 2.707139e-02	ci left: 1.245286e-02	ci right 1.279520e-02	k: 20702	n:1640000
ASB5   1640000 perm   1534 sec   (1069 perm/sec)   p_kst 1.262317e-02   p_cons 2.937195e-03   p_joint 4.359756e-04

Joint ci ratio: 1.462612e-01	ci left: 4.033224e-04	ci right 4.675431e-04	k: 717	n:1650000
Cons ci ratio: 5.623420e-02	ci left: 2.853776e-03	ci right 3.019491e-03	k: 4844	n:1650000
KS ci ratio: 2.698808e-02	ci left: 1.245444e-02	ci right 1.279576e-02	k: 20830	n:1650000
ASB5   1650000 perm   1551 sec   (1064 perm/sec)   p_kst 1.262424e-02   p_cons 2.935758e-03   p_joint 4.345455e-04

Joint ci ratio: 1.459567e-01	ci left: 4.026339e-04	ci right 4.665999e-04	k: 720	n:1660000
Cons ci ratio: 5.603784e-02	ci left: 2.856779e-03	ci right 3.022071e-03	k: 4878	n:1660000
KS ci ratio: 2.691984e-02	ci left: 1.244284e-02	ci right 1.278296e-02	k: 20936	n:1660000
ASB5   1660000 perm   1567 sec   (1059 perm/sec)   p_kst 1.261205e-02   p_cons 2.938554e-03   p_joint 4.337349e-04

Joint ci ratio: 1.453531e-01	ci left: 4.036848e-04	ci right 4.675295e-04	k: 726	n:1670000
Cons ci ratio: 5.589489e-02	ci left: 2.854433e-03	ci right 3.019154e-03	k: 4903	n:1670000
KS ci ratio: 2.682502e-02	ci left: 1.245636e-02	ci right 1.279563e-02	k: 21084	n:1670000
ASB5   1670000 perm   1584 sec   (1054 perm/sec)   p_kst 1.262515e-02   p_cons 2.935928e-03   p_joint 4.347305e-04

Joint ci ratio: 1.445597e-01	ci left: 4.058712e-04	ci right 4.696810e-04	k: 734	n:1680000
Cons ci ratio: 5.567379e-02	ci left: 2.860333e-03	ci right 3.024721e-03	k: 4942	n:1680000
KS ci ratio: 2.673948e-02	ci left: 1.246203e-02	ci right 1.280036e-02	k: 21219	n:1680000
ASB5   1680000 perm   1601 sec   (1049 perm/sec)   p_kst 1.263036e-02   p_cons 2.941667e-03   p_joint 4.369048e-04

Joint ci ratio: 1.439732e-01	ci left: 4.068917e-04	ci right 4.705802e-04	k: 740	n:1690000
Cons ci ratio: 5.548322e-02	ci left: 2.863247e-03	ci right 3.027221e-03	k: 4976	n:1690000
KS ci ratio: 2.665602e-02	ci left: 1.246647e-02	ci right 1.280384e-02	k: 21352	n:1690000
ASB5   1690000 perm   1618 sec   (1045 perm/sec)   p_kst 1.263432e-02   p_cons 2.944379e-03   p_joint 4.378698e-04

Joint ci ratio: 1.435862e-01	ci left: 4.067666e-04	ci right 4.702496e-04	k: 744	n:1700000
Cons ci ratio: 5.535557e-02	ci left: 2.859746e-03	ci right 3.023131e-03	k: 4999	n:1700000
KS ci ratio: 2.658337e-02	ci left: 1.246150e-02	ci right 1.279781e-02	k: 21469	n:1700000
ASB5   1700000 perm   1635 sec   (1040 perm/sec)   p_kst 1.262882e-02   p_cons 2.940588e-03   p_joint 4.376471e-04

Joint ci ratio: 1.232486e-01	ci left: 5.547840e-04	ci right 6.282111e-04	k: 1010	n:1710000
Cons ci ratio: 5.522879e-02	ci left: 2.856287e-03	ci right 3.019088e-03	k: 5022	n:1710000
KS ci ratio: 2.651379e-02	ci left: 1.245427e-02	ci right 1.278949e-02	k: 21582	n:1710000
ASB5   1710000 perm   1652 sec   (1035 perm/sec)   p_kst 1.262105e-02   p_cons 2.936842e-03   p_joint 5.906433e-04

Joint ci ratio: 1.300554e-01	ci left: 4.935696e-04	ci right 5.627813e-04	k: 907	n:1720000
Cons ci ratio: 5.504275e-02	ci left: 2.859175e-03	ci right 3.021575e-03	k: 5056	n:1720000
KS ci ratio: 2.642688e-02	ci left: 1.246387e-02	ci right 1.279824e-02	k: 21724	n:1720000
ASB5   1720000 perm   1670 sec   (1030 perm/sec)   p_kst 1.263023e-02   p_cons 2.939535e-03   p_joint 5.273256e-04

Joint ci ratio: 1.318101e-01	ci left: 4.772979e-04	ci right 5.452016e-04	k: 883	n:1730000
Cons ci ratio: 5.488560e-02	ci left: 2.859181e-03	ci right 3.021103e-03	k: 5085	n:1730000
KS ci ratio: 2.634203e-02	ci left: 1.247222e-02	ci right 1.280572e-02	k: 21864	n:1730000
ASB5   1730000 perm   1687 sec   (1025 perm/sec)   p_kst 1.263815e-02   p_cons 2.939306e-03   p_joint 5.104046e-04

Joint ci ratio: 1.312176e-01	ci left: 4.790013e-04	ci right 5.468171e-04	k: 891	n:1740000
Cons ci ratio: 5.474053e-02	ci left: 2.858054e-03	ci right 3.019470e-03	k: 5112	n:1740000
KS ci ratio: 2.627009e-02	ci left: 1.246905e-02	ci right 1.280154e-02	k: 21984	n:1740000
ASB5   1740000 perm   1705 sec   (1021 perm/sec)   p_kst 1.263448e-02   p_cons 2.937931e-03   p_joint 5.120690e-04

Joint ci ratio: 1.309244e-01	ci left: 4.784749e-04	ci right 5.460531e-04	k: 895	n:1750000
Cons ci ratio: 5.455404e-02	ci left: 2.861449e-03	ci right 3.022489e-03	k: 5147	n:1750000
KS ci ratio: 2.619574e-02	ci left: 1.246876e-02	ci right 1.280028e-02	k: 22109	n:1750000
ASB5   1750000 perm   1722 sec   (1016 perm/sec)   p_kst 1.263371e-02   p_cons 2.941143e-03   p_joint 5.114286e-04

Joint ci ratio: 1.304159e-01	ci left: 4.796035e-04	ci right 5.470577e-04	k: 902	n:1760000
Cons ci ratio: 5.439577e-02	ci left: 2.862004e-03	ci right 3.022593e-03	k: 5177	n:1760000
KS ci ratio: 2.611487e-02	ci left: 1.247525e-02	ci right 1.280590e-02	k: 22246	n:1760000
ASB5   1760000 perm   1740 sec   (1012 perm/sec)   p_kst 1.263977e-02   p_cons 2.941477e-03   p_joint 5.125000e-04

Joint ci ratio: 1.300564e-01	ci left: 4.796267e-04	ci right 5.468838e-04	k: 907	n:1770000
Cons ci ratio: 5.425977e-02	ci left: 2.860324e-03	ci right 3.020405e-03	k: 5203	n:1770000
KS ci ratio: 2.603534e-02	ci left: 1.248110e-02	ci right 1.281089e-02	k: 22382	n:1770000
ASB5   1770000 perm   1758 sec   (1007 perm/sec)   p_kst 1.264520e-02   p_cons 2.939548e-03   p_joint 5.124294e-04

Joint ci ratio: 1.298421e-01	ci left: 4.785628e-04	ci right 5.455516e-04	k: 910	n:1780000
Cons ci ratio: 5.417155e-02	ci left: 2.853675e-03	ci right 3.013117e-03	k: 5220	n:1780000
KS ci ratio: 2.594603e-02	ci left: 1.249694e-02	ci right 1.282600e-02	k: 22536	n:1780000
ASB5   1780000 perm   1776 sec   (1002 perm/sec)   p_kst 1.266067e-02   p_cons 2.932584e-03   p_joint 5.112360e-04

Joint ci ratio: 1.293461e-01	ci left: 4.796731e-04	ci right 5.465411e-04	k: 917	n:1790000
Cons ci ratio: 5.402173e-02	ci left: 2.853715e-03	ci right 3.012704e-03	k: 5249	n:1790000
KS ci ratio: 2.587381e-02	ci left: 1.249706e-02	ci right 1.282519e-02	k: 22662	n:1790000
ASB5   1790000 perm   1794 sec   (998 perm/sec)   p_kst 1.266034e-02   p_cons 2.932402e-03   p_joint 5.122905e-04

Joint ci ratio: 1.290652e-01	ci left: 4.791587e-04	ci right 5.457988e-04	k: 921	n:1800000
Cons ci ratio: 5.389363e-02	ci left: 2.851563e-03	ci right 3.010043e-03	k: 5274	n:1800000
KS ci ratio: 2.579760e-02	ci left: 1.250159e-02	ci right 1.282887e-02	k: 22796	n:1800000
ASB5   1800000 perm   1812 sec   (994 perm/sec)   p_kst 1.266444e-02   p_cons 2.930000e-03   p_joint 5.116667e-04

Joint ci ratio: 1.287167e-01	ci left: 4.791847e-04	ci right 5.456348e-04	k: 926	n:1810000
Cons ci ratio: 5.372578e-02	ci left: 2.853795e-03	ci right 3.011891e-03	k: 5307	n:1810000
KS ci ratio: 2.572150e-02	ci left: 1.250663e-02	ci right 1.283305e-02	k: 22931	n:1810000
ASB5   1810000 perm   1830 sec   (989 perm/sec)   p_kst 1.266906e-02   p_cons 2.932044e-03   p_joint 5.116022e-04

Joint ci ratio: 1.285782e-01	ci left: 4.776154e-04	ci right 5.437711e-04	k: 928	n:1820000
Cons ci ratio: 5.361490e-02	ci left: 2.850040e-03	ci right 3.007592e-03	k: 5329	n:1820000
KS ci ratio: 2.566184e-02	ci left: 1.249633e-02	ci right 1.282171e-02	k: 23038	n:1820000
ASB5   1820000 perm   1848 sec   (985 perm/sec)   p_kst 1.265824e-02   p_cons 2.928022e-03   p_joint 5.098901e-04

Joint ci ratio: 1.282335e-01	ci left: 4.776499e-04	ci right 5.436196e-04	k: 933	n:1830000
Cons ci ratio: 5.346463e-02	ci left: 2.850640e-03	ci right 3.007770e-03	k: 5359	n:1830000
KS ci ratio: 2.559531e-02	ci left: 1.249319e-02	ci right 1.281764e-02	k: 23158	n:1830000
ASB5   1830000 perm   1866 sec   (981 perm/sec)   p_kst 1.265464e-02   p_cons 2.928415e-03   p_joint 5.098361e-04

Joint ci ratio: 1.278917e-01	ci left: 4.776843e-04	ci right 5.434696e-04	k: 938	n:1840000
Cons ci ratio: 5.328094e-02	ci left: 2.854988e-03	ci right 3.011800e-03	k: 5396	n:1840000
KS ci ratio: 2.552764e-02	ci left: 1.249172e-02	ci right 1.281526e-02	k: 23281	n:1840000
ASB5   1840000 perm   1884 sec   (976 perm/sec)   p_kst 1.265272e-02   p_cons 2.932609e-03   p_joint 5.097826e-04

Joint ci ratio: 1.275525e-01	ci left: 4.777186e-04	ci right 5.433209e-04	k: 943	n:1850000
Cons ci ratio: 5.309913e-02	ci left: 2.859290e-03	ci right 3.015786e-03	k: 5433	n:1850000
KS ci ratio: 2.544454e-02	ci left: 1.250583e-02	ci right 1.282867e-02	k: 23433	n:1850000
ASB5   1850000 perm   1903 sec   (972 perm/sec)   p_kst 1.266649e-02   p_cons 2.936757e-03   p_joint 5.097297e-04

Joint ci ratio: 1.270822e-01	ci left: 4.787938e-04	ci right 5.442830e-04	k: 950	n:1860000
Cons ci ratio: 5.299694e-02	ci left: 2.855058e-03	ci right 3.011012e-03	k: 5454	n:1860000
KS ci ratio: 2.537259e-02	ci left: 1.250965e-02	ci right 1.283166e-02	k: 23566	n:1860000
ASB5   1860000 perm   1921 sec   (968 perm/sec)   p_kst 1.266989e-02   p_cons 2.932258e-03   p_joint 5.107527e-04

Joint ci ratio: 1.264849e-01	ci left: 4.808937e-04	ci right 5.463378e-04	k: 959	n:1870000
Cons ci ratio: 5.287598e-02	ci left: 2.852982e-03	ci right 3.008457e-03	k: 5479	n:1870000
KS ci ratio: 2.530450e-02	ci left: 1.251024e-02	ci right 1.283138e-02	k: 23693	n:1870000
ASB5   1870000 perm   1940 sec   (964 perm/sec)   p_kst 1.267005e-02   p_cons 2.929947e-03   p_joint 5.128342e-04

Joint ci ratio: 1.262878e-01	ci left: 4.798810e-04	ci right 5.450779e-04	k: 962	n:1880000
Cons ci ratio: 5.275103e-02	ci left: 2.851454e-03	ci right 3.006467e-03	k: 5505	n:1880000
KS ci ratio: 2.524018e-02	ci left: 1.250765e-02	ci right 1.282790e-02	k: 23814	n:1880000
ASB5   1880000 perm   1959 sec   (960 perm/sec)   p_kst 1.266702e-02   p_cons 2.928191e-03   p_joint 5.117021e-04

Joint ci ratio: 1.258962e-01	ci left: 4.804164e-04	ci right 5.454686e-04	k: 968	n:1890000
Cons ci ratio: 5.263651e-02	ci left: 2.848898e-03	ci right 3.003425e-03	k: 5529	n:1890000
KS ci ratio: 2.517421e-02	ci left: 1.250719e-02	ci right 1.282658e-02	k: 23939	n:1890000
ASB5   1890000 perm   1978 sec   (956 perm/sec)   p_kst 1.266614e-02   p_cons 2.925397e-03   p_joint 5.121693e-04

Joint ci ratio: 1.256372e-01	ci left: 4.799269e-04	ci right 5.447692e-04	k: 972	n:1900000
Cons ci ratio: 5.249430e-02	ci left: 2.849486e-03	ci right 3.003615e-03	k: 5559	n:1900000
KS ci ratio: 2.510875e-02	ci left: 1.250674e-02	ci right 1.282528e-02	k: 24064	n:1900000
ASB5   1900000 perm   1997 sec   (952 perm/sec)   p_kst 1.266526e-02   p_cons 2.925789e-03   p_joint 5.115789e-04

Joint ci ratio: 1.251876e-01	ci left: 4.809642e-04	ci right 5.456968e-04	k: 979	n:1910000
Cons ci ratio: 5.236264e-02	ci left: 2.849034e-03	ci right 3.002741e-03	k: 5587	n:1910000
KS ci ratio: 2.504748e-02	ci left: 1.250265e-02	ci right 1.282030e-02	k: 24182	n:1910000
ASB5   1910000 perm   2016 sec   (948 perm/sec)   p_kst 1.266073e-02   p_cons 2.925131e-03   p_joint 5.125654e-04

Joint ci ratio: 1.249330e-01	ci left: 4.804773e-04	ci right 5.450031e-04	k: 983	n:1920000
Cons ci ratio: 5.227399e-02	ci left: 2.843962e-03	ci right 2.997127e-03	k: 5606	n:1920000
KS ci ratio: 2.497988e-02	ci left: 1.250533e-02	ci right 1.282218e-02	k: 24313	n:1920000
ASB5   1920000 perm   2035 sec   (944 perm/sec)   p_kst 1.266302e-02   p_cons 2.919792e-03   p_joint 5.119792e-04

Joint ci ratio: 1.245538e-01	ci left: 4.809996e-04	ci right 5.453850e-04	k: 989	n:1930000
Cons ci ratio: 5.208837e-02	ci left: 2.849681e-03	ci right 3.002593e-03	k: 5646	n:1930000
KS ci ratio: 2.492057e-02	ci left: 1.250027e-02	ci right 1.281622e-02	k: 24429	n:1930000
ASB5   1930000 perm   2054 sec   (940 perm/sec)   p_kst 1.265751e-02   p_cons 2.925389e-03   p_joint 5.124352e-04

Joint ci ratio: 1.244283e-01	ci left: 4.795190e-04	ci right 5.436368e-04	k: 991	n:1940000
Cons ci ratio: 5.190472e-02	ci left: 2.855343e-03	ci right 3.008002e-03	k: 5686	n:1940000
KS ci ratio: 2.485605e-02	ci left: 1.250089e-02	ci right 1.281603e-02	k: 24556	n:1940000
ASB5   1940000 perm   2073 sec   (936 perm/sec)   p_kst 1.265773e-02   p_cons 2.930928e-03   p_joint 5.108247e-04

Joint ci ratio: 1.239915e-01	ci left: 4.805382e-04	ci right 5.445501e-04	k: 998	n:1950000
Cons ci ratio: 5.178197e-02	ci left: 2.854367e-03	ci right 3.006602e-03	k: 5713	n:1950000
KS ci ratio: 2.479456e-02	ci left: 1.249896e-02	ci right 1.281326e-02	k: 24678	n:1950000
ASB5   1950000 perm   2092 sec   (932 perm/sec)   p_kst 1.265538e-02   p_cons 2.929744e-03   p_joint 5.117949e-04

Joint ci ratio: 1.237441e-01	ci left: 4.800640e-04	ci right 5.438758e-04	k: 1002	n:1960000
Cons ci ratio: 5.167816e-02	ci left: 2.851387e-03	ci right 3.003149e-03	k: 5736	n:1960000
KS ci ratio: 2.473656e-02	ci left: 1.249401e-02	ci right 1.280744e-02	k: 24794	n:1960000
ASB5   1960000 perm   2111 sec   (928 perm/sec)   p_kst 1.265000e-02   p_cons 2.926531e-03   p_joint 5.112245e-04

Joint ci ratio: 1.234368e-01	ci left: 4.800868e-04	ci right 5.437315e-04	k: 1007	n:1970000
Cons ci ratio: 5.153459e-02	ci left: 2.852947e-03	ci right 3.004358e-03	k: 5768	n:1970000
KS ci ratio: 2.467195e-02	ci left: 1.249617e-02	ci right 1.280882e-02	k: 24924	n:1970000
ASB5   1970000 perm   2130 sec   (925 perm/sec)   p_kst 1.265178e-02   p_cons 2.927919e-03   p_joint 5.111675e-04

Joint ci ratio: 1.232536e-01	ci left: 4.791305e-04	ci right 5.425473e-04	k: 1010	n:1980000
Cons ci ratio: 5.138334e-02	ci left: 2.855489e-03	ci right 3.006577e-03	k: 5802	n:1980000
KS ci ratio: 2.460983e-02	ci left: 1.249630e-02	ci right 1.280816e-02	k: 25050	n:1980000
ASB5   1980000 perm   2150 sec   (921 perm/sec)   p_kst 1.265152e-02   p_cons 2.930303e-03   p_joint 5.101010e-04

Joint ci ratio: 1.240543e-01	ci left: 4.703920e-04	ci right 5.330865e-04	k: 997	n:1990000
Cons ci ratio: 5.128189e-02	ci left: 2.852549e-03	ci right 3.003175e-03	k: 5825	n:1990000
KS ci ratio: 2.455262e-02	ci left: 1.249194e-02	ci right 1.280295e-02	k: 25167	n:1990000
ASB5   1990000 perm   2169 sec   (917 perm/sec)   p_kst 1.264673e-02   p_cons 2.927136e-03   p_joint 5.010050e-04

Joint ci ratio: 1.243039e-01	ci left: 4.661021e-04	ci right 5.283590e-04	k: 993	n:2000000
Cons ci ratio: 5.118544e-02	ci left: 2.849145e-03	ci right 2.999300e-03	k: 5847	n:2000000
KS ci ratio: 2.449728e-02	ci left: 1.248613e-02	ci right 1.279629e-02	k: 25281	n:2000000
ASB5   2000000 perm   2189 sec   (914 perm/sec)   p_kst 1.264050e-02   p_cons 2.923500e-03   p_joint 4.965000e-04

Joint ci ratio: 1.239925e-01	ci left: 4.661935e-04	ci right 5.282952e-04	k: 998	n:2010000
Cons ci ratio: 5.107207e-02	ci left: 2.847740e-03	ci right 2.997479e-03	k: 5873	n:2010000
KS ci ratio: 2.443111e-02	ci left: 1.249175e-02	ci right 1.280120e-02	k: 25418	n:2010000
ASB5   2010000 perm   2208 sec   (910 perm/sec)   p_kst 1.264577e-02   p_cons 2.921891e-03   p_joint 4.965174e-04

Joint ci ratio: 1.236833e-01	ci left: 4.662842e-04	ci right 5.282317e-04	k: 1003	n:2020000
Cons ci ratio: 5.093781e-02	ci left: 2.848793e-03	ci right 2.998182e-03	k: 5904	n:2020000
KS ci ratio: 2.437368e-02	ci left: 1.248895e-02	ci right 1.279760e-02	k: 25538	n:2020000
ASB5   2020000 perm   2228 sec   (907 perm/sec)   p_kst 1.264257e-02   p_cons 2.922772e-03   p_joint 4.965347e-04

Joint ci ratio: 1.289291e-01	ci left: 4.258224e-04	ci right 4.849775e-04	k: 923	n:2030000
Cons ci ratio: 5.084758e-02	ci left: 2.844973e-03	ci right 2.993889e-03	k: 5925	n:2030000
KS ci ratio: 2.431570e-02	ci left: 1.248716e-02	ci right 1.279502e-02	k: 25660	n:2030000
ASB5   2030000 perm   2248 sec   (903 perm/sec)   p_kst 1.264039e-02   p_cons 2.918719e-03   p_joint 4.546798e-04

Joint ci ratio: 1.287204e-01	ci left: 4.251582e-04	ci right 4.841181e-04	k: 926	n:2040000
Cons ci ratio: 5.074499e-02	ci left: 2.842642e-03	ci right 2.991127e-03	k: 5949	n:2040000
KS ci ratio: 2.426289e-02	ci left: 1.248052e-02	ci right 1.278753e-02	k: 25772	n:2040000
ASB5   2040000 perm   2268 sec   (900 perm/sec)   p_kst 1.263333e-02   p_cons 2.916176e-03   p_joint 4.539216e-04

Joint ci ratio: 1.284436e-01	ci left: 4.249727e-04	ci right 4.837705e-04	k: 930	n:2050000
Cons ci ratio: 5.061754e-02	ci left: 2.843224e-03	ci right 2.991356e-03	k: 5979	n:2050000
KS ci ratio: 2.421233e-02	ci left: 1.247200e-02	ci right 1.277816e-02	k: 25880	n:2050000
ASB5   2050000 perm   2288 sec   (896 perm/sec)   p_kst 1.262439e-02   p_cons 2.916585e-03   p_joint 4.536585e-04

Joint ci ratio: 1.324920e-01	ci left: 3.966120e-04	ci right 4.533516e-04	k: 874	n:2060000
Cons ci ratio: 5.051211e-02	ci left: 2.841405e-03	ci right 2.989124e-03	k: 6004	n:2060000
KS ci ratio: 2.415407e-02	ci left: 1.247177e-02	ci right 1.277717e-02	k: 26005	n:2060000
ASB5   2060000 perm   2308 sec   (893 perm/sec)   p_kst 1.262379e-02   p_cons 2.914563e-03   p_joint 4.242718e-04

Joint ci ratio: 1.322655e-01	ci left: 3.960972e-04	ci right 4.526587e-04	k: 877	n:2070000
Cons ci ratio: 5.040315e-02	ci left: 2.840080e-03	ci right 2.987403e-03	k: 6030	n:2070000
KS ci ratio: 2.408597e-02	ci left: 1.248211e-02	ci right 1.278689e-02	k: 26152	n:2070000
ASB5   2070000 perm   2329 sec   (889 perm/sec)   p_kst 1.263382e-02   p_cons 2.913043e-03   p_joint 4.236715e-04

Joint ci ratio: 1.318158e-01	ci left: 3.969823e-04	ci right 4.534623e-04	k: 883	n:2080000
Cons ci ratio: 5.030323e-02	ci left: 2.837819e-03	ci right 2.984724e-03	k: 6054	n:2080000
KS ci ratio: 2.402400e-02	ci left: 1.248661e-02	ci right 1.279071e-02	k: 26287	n:2080000
ASB5   2080000 perm   2349 sec   (885 perm/sec)   p_kst 1.263798e-02   p_cons 2.910577e-03   p_joint 4.245192e-04

Joint ci ratio: 1.316670e-01	ci left: 3.960082e-04	ci right 4.522811e-04	k: 885	n:2090000
Cons ci ratio: 5.020389e-02	ci left: 2.835580e-03	ci right 2.982071e-03	k: 6078	n:2090000
KS ci ratio: 2.397077e-02	ci left: 1.248251e-02	ci right 1.278583e-02	k: 26404	n:2090000
ASB5   2090000 perm   2370 sec   (882 perm/sec)   p_kst 1.263349e-02   p_cons 2.908134e-03   p_joint 4.234450e-04

Joint ci ratio: 1.314447e-01	ci left: 3.955040e-04	ci right 4.516029e-04	k: 888	n:2100000
Cons ci ratio: 5.011338e-02	ci left: 2.832422e-03	ci right 2.978478e-03	k: 6100	n:2100000
KS ci ratio: 2.391789e-02	ci left: 1.247845e-02	ci right 1.278099e-02	k: 26521	n:2100000
ASB5   2100000 perm   2391 sec   (878 perm/sec)   p_kst 1.262905e-02   p_cons 2.904762e-03   p_joint 4.228571e-04

Joint ci ratio: 1.311500e-01	ci left: 3.954630e-04	ci right 4.514206e-04	k: 892	n:2110000
Cons ci ratio: 4.999061e-02	ci left: 2.833038e-03	ci right 2.978758e-03	k: 6130	n:2110000
KS ci ratio: 2.386264e-02	ci left: 1.247726e-02	ci right 1.277906e-02	k: 26644	n:2110000
ASB5   2110000 perm   2412 sec   (875 perm/sec)   p_kst 1.262749e-02   p_cons 2.905213e-03   p_joint 4.227488e-04

Joint ci ratio: 1.338775e-01	ci left: 3.771791e-04	ci right 4.317479e-04	k: 856	n:2120000
Cons ci ratio: 4.986874e-02	ci left: 2.833649e-03	ci right 2.979035e-03	k: 6160	n:2120000
KS ci ratio: 2.380147e-02	ci left: 1.248264e-02	ci right 1.278379e-02	k: 26781	n:2120000
ASB5   2120000 perm   2432 sec   (872 perm/sec)   p_kst 1.263255e-02   p_cons 2.905660e-03   p_joint 4.037736e-04

Joint ci ratio: 1.335662e-01	ci left: 3.772235e-04	ci right 4.316616e-04	k: 860	n:2130000
Cons ci ratio: 4.975582e-02	ci left: 2.833327e-03	ci right 2.978358e-03	k: 6188	n:2130000
KS ci ratio: 2.374389e-02	ci left: 1.248471e-02	ci right 1.278516e-02	k: 26911	n:2130000
ASB5   2130000 perm   2453 sec   (868 perm/sec)   p_kst 1.263427e-02   p_cons 2.905164e-03   p_joint 4.037559e-04

Joint ci ratio: 1.331800e-01	ci left: 3.777192e-04	ci right 4.320588e-04	k: 865	n:2140000
Cons ci ratio: 4.963165e-02	ci left: 2.834393e-03	ci right 2.979107e-03	k: 6219	n:2140000
KS ci ratio: 2.368407e-02	ci left: 1.248954e-02	ci right 1.278935e-02	k: 27047	n:2140000
ASB5   2140000 perm   2474 sec   (865 perm/sec)   p_kst 1.263879e-02   p_cons 2.906075e-03   p_joint 4.042056e-04

Joint ci ratio: 9.827131e-02	ci left: 7.031859e-04	ci right 7.763092e-04	k: 1589	n:2150000
Cons ci ratio: 4.319066e-02	ci left: 3.734298e-03	ci right 3.899601e-03	k: 8205	n:2150000
KS ci ratio: 2.362866e-02	ci left: 1.249017e-02	ci right 1.278928e-02	k: 27174	n:2150000
ASB5   2150000 perm   2495 sec   (862 perm/sec)   p_kst 1.263907e-02   p_cons 3.816279e-03   p_joint 7.390698e-04

Outputting figure to mutsig2_images.part000000000012/ASB5.9_1018_2150000_0.012639_0.0038163_0.00073907.png
                gene_name: ASB5
               theta_stop: 0.098 
                    nperm: 2150000 
                     p_ks: 0.013 
        ci_ks_bounds_left: 0.012 
       ci_ks_bounds_right: 0.013 
                   p_cons: 0.0038 
      ci_cons_bounds_left: 0.0037 
     ci_cons_bounds_right: 0.0039 
                  p_joint: 0.00074 
     ci_joint_bounds_left: 0.00070 
    ci_joint_bounds_right: 0.00078 

Current progress: 21 percent done.
ASH1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.901581e-02	ci left: 1.896376e-01	ci right 2.053390e-01	k: 1974	n:10000
Cons ci ratio: 7.964445e-02	ci left: 1.871758e-01	ci right 2.028023e-01	k: 1949	n:10000
KS ci ratio: 1.048634e-01	ci left: 1.161346e-01	ci right 1.290861e-01	k: 1225	n:10000
ASH1L   10000 perm   3 sec   (2932 perm/sec)   p_kst 1.225000e-01   p_cons 1.949000e-01   p_joint 1.974000e-01

Joint ci ratio: 7.616503e-02	ci left: 1.124780e-01	ci right 1.214337e-01	k: 2338	n:20000
Cons ci ratio: 5.744568e-02	ci left: 1.833968e-01	ci right 1.942938e-01	k: 3776	n:20000
KS ci ratio: 7.353701e-02	ci left: 1.198066e-01	ci right 1.290029e-01	k: 2487	n:20000
ASH1L   20000 perm   7 sec   (2702 perm/sec)   p_kst 1.243500e-01   p_cons 1.888000e-01   p_joint 1.169000e-01

Outputting figure to mutsig2_images.part000000000012/ASH1L.9_9003_20000_0.12435_0.1888_0.1169.png
                gene_name: ASH1L
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 23 percent done.
ASB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.675954e-02	ci left: 6.728712e-01	ci right 6.912227e-01	k: 6821	n:10000
Cons ci ratio: 2.449299e-02	ci left: 7.102792e-01	ci right 7.279930e-01	k: 7192	n:10000
KS ci ratio: 4.340871e-02	ci left: 4.393171e-01	ci right 4.589126e-01	k: 4491	n:10000
ASB4   10000 perm   2 sec   (5215 perm/sec)   p_kst 4.491000e-01   p_cons 7.192000e-01   p_joint 6.821000e-01

Outputting figure to mutsig2_images.part000000000012/ASB4.7_1371_10000_0.4491_0.7192_0.6821.png
                gene_name: ASB4
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 26 percent done.
ATG2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.593006e-02	ci left: 6.864752e-01	ci right 7.046108e-01	k: 6956	n:10000
Cons ci ratio: 5.583028e-02	ci left: 3.208839e-01	ci right 3.394152e-01	k: 3301	n:10000
KS ci ratio: 2.850386e-02	ci left: 6.446834e-01	ci right 6.634268e-01	k: 6541	n:10000
ATG2A   10000 perm   3 sec   (3508 perm/sec)   p_kst 6.541000e-01   p_cons 3.301000e-01   p_joint 6.956000e-01

Outputting figure to mutsig2_images.part000000000012/ATG2A.7_5981_10000_0.6541_0.3301_0.6956.png
                gene_name: ATG2A
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.70 

Current progress: 28 percent done.
ASB17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.009549e-02	ci left: 7.838091e-01	ci right 7.998206e-01	k: 7919	n:10000
KS ci ratio: 2.348272e-02	ci left: 7.271416e-01	ci right 7.445209e-01	k: 7359	n:10000
ASB17   10000 perm   2 sec   (5797 perm/sec)   p_kst 7.359000e-01   p_cons 7.919000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000012/ASB17.6_900_10000_0.7359_0.7919_1.png
                gene_name: ASB17
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 30 percent done.
ASCL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.541639e-02	ci left: 3.241598e-01	ci right 3.427373e-01	k: 3334	n:10000
Cons ci ratio: 4.318138e-02	ci left: 4.419113e-01	ci right 4.615169e-01	k: 4517	n:10000
KS ci ratio: 7.098191e-02	ci left: 2.253355e-01	ci right 2.420199e-01	k: 2336	n:10000
ASCL4   10000 perm   2 sec   (5699 perm/sec)   p_kst 2.336000e-01   p_cons 4.517000e-01   p_joint 3.334000e-01

Outputting figure to mutsig2_images.part000000000012/ASCL4.6_526_10000_0.2336_0.4517_0.3334.png
                gene_name: ASCL4
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 32 percent done.
ATAD5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.320387e-02	ci left: 2.689378e-01	ci right 2.865919e-01	k: 2777	n:10000
Cons ci ratio: 1.255651e-01	ci left: 8.319799e-02	ci right 9.444288e-02	k: 887	n:10000
KS ci ratio: 2.249902e-02	ci left: 7.436154e-01	ci right 7.606374e-01	k: 7522	n:10000
ATAD5   10000 perm   3 sec   (3529 perm/sec)   p_kst 7.522000e-01   p_cons 8.870000e-02   p_joint 2.777000e-01

Joint ci ratio: 5.000383e-02	ci left: 2.291376e-01	ci right 2.409395e-01	k: 4700	n:20000
Cons ci ratio: 8.530316e-02	ci left: 9.141174e-02	ci right 9.960629e-02	k: 1909	n:20000
KS ci ratio: 1.568742e-02	ci left: 7.513971e-01	ci right 7.633280e-01	k: 15148	n:20000
ATAD5   20000 perm   6 sec   (3275 perm/sec)   p_kst 7.574000e-01   p_cons 9.545000e-02   p_joint 2.350000e-01

Outputting figure to mutsig2_images.part000000000012/ATAD5.6_5627_20000_0.7574_0.09545_0.235.png
                gene_name: ATAD5
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.095 
      ci_cons_bounds_left: 0.091 
     ci_cons_bounds_right: 0.100 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 34 percent done.
ASAH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.484002e-01	ci left: 1.032396e-02	ci right 1.476677e-02	k: 124	n:10000
Cons ci ratio: 2.577713e-02	ci left: 6.889954e-01	ci right 7.070891e-01	k: 6981	n:10000
KS ci ratio: 1.385306e+00	ci left: 2.814811e-04	ci right 1.441732e-03	k: 7	n:10000
ASAH2   10000 perm   2 sec   (4980 perm/sec)   p_kst 7.000000e-04   p_cons 6.981000e-01   p_joint 1.240000e-02

Joint ci ratio: 3.744341e-01	ci left: 4.431766e-03	ci right 6.515982e-03	k: 108	n:20000
Cons ci ratio: 1.875907e-02	ci left: 6.793653e-01	ci right 6.922806e-01	k: 13717	n:20000
KS ci ratio: 1.086832e+00	ci left: 3.100660e-04	ci right 1.047844e-03	k: 12	n:20000
ASAH2   20000 perm   4 sec   (4574 perm/sec)   p_kst 6.000000e-04   p_cons 6.858500e-01   p_joint 5.400000e-03

Joint ci ratio: 3.913396e-01	ci left: 2.682862e-03	ci right 4.016189e-03	k: 99	n:30000
Cons ci ratio: 1.524998e-02	ci left: 6.824547e-01	ci right 6.929756e-01	k: 20632	n:30000
KS ci ratio: 1.011870e+00	ci left: 2.551537e-04	ci right 7.828635e-04	k: 14	n:30000
ASAH2   30000 perm   7 sec   (4402 perm/sec)   p_kst 4.666667e-04   p_cons 6.877333e-01   p_joint 3.300000e-03

Joint ci ratio: 3.838828e-01	ci left: 2.102270e-03	ci right 3.122080e-03	k: 103	n:40000
Cons ci ratio: 1.318875e-02	ci left: 6.837599e-01	ci right 6.928628e-01	k: 27533	n:40000
KS ci ratio: 9.237334e-01	ci left: 2.475970e-04	ci right 6.803793e-04	k: 17	n:40000
ASAH2   40000 perm   9 sec   (4269 perm/sec)   p_kst 4.250000e-04   p_cons 6.883250e-01   p_joint 2.575000e-03

Joint ci ratio: 3.544634e-01	ci left: 2.008446e-03	ci right 2.890909e-03	k: 121	n:50000
Cons ci ratio: 1.175972e-02	ci left: 6.855840e-01	ci right 6.937140e-01	k: 34483	n:50000
KS ci ratio: 8.355546e-01	ci left: 2.600048e-04	ci right 6.419433e-04	k: 21	n:50000
ASAH2   50000 perm   12 sec   (4173 perm/sec)   p_kst 4.200000e-04   p_cons 6.896600e-01   p_joint 2.420000e-03

Joint ci ratio: 3.530891e-01	ci left: 1.688838e-03	ci right 2.427324e-03	k: 122	n:60000
Cons ci ratio: 1.070781e-02	ci left: 6.870343e-01	ci right 6.944472e-01	k: 41445	n:60000
KS ci ratio: 7.838301e-01	ci left: 2.563038e-04	ci right 5.951102e-04	k: 24	n:60000
ASAH2   60000 perm   15 sec   (4085 perm/sec)   p_kst 4.000000e-04   p_cons 6.907500e-01   p_joint 2.033333e-03

Joint ci ratio: 2.018836e-01	ci left: 4.816266e-03	ci right 5.911065e-03	k: 374	n:70000
Cons ci ratio: 9.892472e-03	ci left: 6.882210e-01	ci right 6.950774e-01	k: 48416	n:70000
KS ci ratio: 6.928013e-01	ci left: 3.009192e-04	ci right 6.285420e-04	k: 31	n:70000
ASAH2   70000 perm   17 sec   (4009 perm/sec)   p_kst 4.428571e-04   p_cons 6.916571e-01   p_joint 5.342857e-03

Joint ci ratio: 2.035946e-01	ci left: 4.142890e-03	ci right 5.093584e-03	k: 368	n:80000
Cons ci ratio: 9.257793e-03	ci left: 6.882487e-01	ci right 6.946624e-01	k: 55317	n:80000
KS ci ratio: 6.822394e-01	ci left: 2.736153e-04	ci right 5.646342e-04	k: 32	n:80000
ASAH2   80000 perm   20 sec   (3934 perm/sec)   p_kst 4.000000e-04   p_cons 6.914625e-01   p_joint 4.600000e-03

Joint ci ratio: 2.157200e-01	ci left: 3.261275e-03	ci right 4.060131e-03	k: 328	n:90000
Cons ci ratio: 8.726207e-03	ci left: 6.885376e-01	ci right 6.945834e-01	k: 62241	n:90000
KS ci ratio: 6.531990e-01	ci left: 2.708898e-04	ci right 5.408092e-04	k: 35	n:90000
ASAH2   90000 perm   23 sec   (3861 perm/sec)   p_kst 3.888889e-04   p_cons 6.915667e-01   p_joint 3.644444e-03

Joint ci ratio: 2.088656e-01	ci left: 3.143432e-03	ci right 3.885825e-03	k: 350	n:100000
Cons ci ratio: 8.286111e-03	ci left: 6.882960e-01	ci right 6.940329e-01	k: 69117	n:100000
KS ci ratio: 6.120726e-01	ci left: 2.857808e-04	ci right 5.446471e-04	k: 40	n:100000
ASAH2   100000 perm   26 sec   (3782 perm/sec)   p_kst 4.000000e-04   p_cons 6.911700e-01   p_joint 3.500000e-03

Joint ci ratio: 2.841397e-01	ci left: 1.482116e-03	ci right 1.981108e-03	k: 189	n:110000
Cons ci ratio: 7.900955e-03	ci left: 6.884056e-01	ci right 6.938753e-01	k: 76026	n:110000
KS ci ratio: 5.656772e-01	ci left: 3.139603e-04	ci right 5.681421e-04	k: 47	n:110000
ASAH2   110000 perm   30 sec   (3714 perm/sec)   p_kst 4.272727e-04   p_cons 6.911455e-01   p_joint 1.718182e-03

Joint ci ratio: 2.689877e-01	ci left: 1.529240e-03	ci right 2.012016e-03	k: 211	n:120000
Cons ci ratio: 7.569828e-03	ci left: 6.882265e-01	ci right 6.934643e-01	k: 82902	n:120000
KS ci ratio: 5.059412e-01	ci left: 3.742999e-04	ci right 6.341690e-04	k: 59	n:120000
ASAH2   120000 perm   33 sec   (3651 perm/sec)   p_kst 4.916667e-04   p_cons 6.908500e-01   p_joint 1.758333e-03

Joint ci ratio: 3.146730e-01	ci left: 1.004994e-03	ci right 1.387046e-03	k: 154	n:130000
Cons ci ratio: 7.276853e-03	ci left: 6.880946e-01	ci right 6.931277e-01	k: 89780	n:130000
KS ci ratio: 4.717855e-01	ci left: 4.062119e-04	ci right 6.630782e-04	k: 68	n:130000
ASAH2   130000 perm   36 sec   (3592 perm/sec)   p_kst 5.230769e-04   p_cons 6.906154e-01   p_joint 1.184615e-03

Joint ci ratio: 2.995857e-01	ci left: 1.038696e-03	ci right 1.411029e-03	k: 170	n:140000
Cons ci ratio: 7.018736e-03	ci left: 6.877846e-01	ci right 6.926361e-01	k: 96630	n:140000
KS ci ratio: 4.495312e-01	ci left: 4.213959e-04	ci right 6.714769e-04	k: 75	n:140000
ASAH2   140000 perm   40 sec   (3533 perm/sec)   p_kst 5.357143e-04   p_cons 6.902143e-01   p_joint 1.214286e-03

Joint ci ratio: 2.895970e-01	ci left: 1.043540e-03	ci right 1.402853e-03	k: 182	n:150000
Cons ci ratio: 6.781183e-03	ci left: 6.878396e-01	ci right 6.925264e-01	k: 103528	n:150000
KS ci ratio: 4.354365e-01	ci left: 4.229221e-04	ci right 6.637362e-04	k: 80	n:150000
ASAH2   150000 perm   43 sec   (3478 perm/sec)   p_kst 5.333333e-04   p_cons 6.901867e-01   p_joint 1.213333e-03

Joint ci ratio: 2.791156e-01	ci left: 1.059582e-03	ci right 1.408895e-03	k: 196	n:160000
Cons ci ratio: 6.573230e-03	ci left: 6.874329e-01	ci right 6.919727e-01	k: 110353	n:160000
KS ci ratio: 4.225895e-01	ci left: 4.243650e-04	ci right 6.568576e-04	k: 85	n:160000
ASAH2   160000 perm   47 sec   (3423 perm/sec)   p_kst 5.312500e-04   p_cons 6.897062e-01   p_joint 1.225000e-03

Joint ci ratio: 2.857364e-01	ci left: 9.480531e-04	ci right 1.269351e-03	k: 187	n:170000
Cons ci ratio: 6.382499e-03	ci left: 6.871293e-01	ci right 6.915348e-01	k: 117187	n:170000
KS ci ratio: 4.130937e-01	ci left: 4.204575e-04	ci right 6.442091e-04	k: 89	n:170000
ASAH2   170000 perm   50 sec   (3370 perm/sec)   p_kst 5.235294e-04   p_cons 6.893353e-01   p_joint 1.100000e-03

Joint ci ratio: 2.756547e-01	ci left: 9.676897e-04	ci right 1.282066e-03	k: 201	n:180000
Cons ci ratio: 6.207209e-03	ci left: 6.868780e-01	ci right 6.911604e-01	k: 124024	n:180000
KS ci ratio: 3.958709e-01	ci left: 4.370236e-04	ci right 6.573598e-04	k: 97	n:180000
ASAH2   180000 perm   54 sec   (3318 perm/sec)   p_kst 5.388889e-04   p_cons 6.890222e-01   p_joint 1.116667e-03

Joint ci ratio: 2.703555e-01	ci left: 9.559813e-04	ci right 1.259571e-03	k: 209	n:190000
Cons ci ratio: 6.037888e-03	ci left: 6.872031e-01	ci right 6.913701e-01	k: 130965	n:190000
KS ci ratio: 3.842814e-01	ci left: 4.425048e-04	ci right 6.574224e-04	k: 103	n:190000
ASAH2   190000 perm   58 sec   (3270 perm/sec)   p_kst 5.421053e-04   p_cons 6.892895e-01   p_joint 1.100000e-03

Joint ci ratio: 2.629465e-01	ci left: 9.641727e-04	ci right 1.260592e-03	k: 221	n:200000
Cons ci ratio: 5.883006e-03	ci left: 6.874018e-01	ci right 6.914627e-01	k: 137887	n:200000
KS ci ratio: 3.686575e-01	ci left: 4.611239e-04	ci right 6.737872e-04	k: 112	n:200000
ASAH2   200000 perm   62 sec   (3220 perm/sec)   p_kst 5.600000e-04   p_cons 6.894350e-01   p_joint 1.105000e-03

Joint ci ratio: 1.747485e-01	ci left: 2.181574e-03	ci right 2.603778e-03	k: 501	n:210000
Cons ci ratio: 5.740547e-03	ci left: 6.875017e-01	ci right 6.914645e-01	k: 144792	n:210000
KS ci ratio: 3.533501e-01	ci left: 4.824685e-04	ci right 6.936189e-04	k: 122	n:210000
ASAH2   210000 perm   66 sec   (3174 perm/sec)   p_kst 5.809524e-04   p_cons 6.894857e-01   p_joint 2.385714e-03

Joint ci ratio: 1.708782e-01	ci left: 2.182435e-03	ci right 2.594487e-03	k: 524	n:220000
Cons ci ratio: 5.608674e-03	ci left: 6.875390e-01	ci right 6.914105e-01	k: 151685	n:220000
KS ci ratio: 3.463807e-01	ci left: 4.812683e-04	ci right 6.868074e-04	k: 127	n:220000
ASAH2   220000 perm   70 sec   (3131 perm/sec)   p_kst 5.772727e-04   p_cons 6.894773e-01   p_joint 2.381818e-03

Joint ci ratio: 1.671014e-01	ci left: 2.187482e-03	ci right 2.590439e-03	k: 548	n:230000
Cons ci ratio: 5.485937e-03	ci left: 6.875392e-01	ci right 6.913256e-01	k: 158570	n:230000
KS ci ratio: 3.372801e-01	ci left: 4.881666e-04	ci right 6.899829e-04	k: 134	n:230000
ASAH2   230000 perm   74 sec   (3090 perm/sec)   p_kst 5.826087e-04   p_cons 6.894348e-01   p_joint 2.382609e-03

Joint ci ratio: 1.747747e-01	ci left: 1.908853e-03	ci right 2.278337e-03	k: 501	n:240000
Cons ci ratio: 5.373114e-03	ci left: 6.873649e-01	ci right 6.910722e-01	k: 165413	n:240000
KS ci ratio: 3.300259e-01	ci left: 4.907324e-04	ci right 6.883201e-04	k: 140	n:240000
ASAH2   240000 perm   79 sec   (3047 perm/sec)   p_kst 5.833333e-04   p_cons 6.892208e-01   p_joint 2.087500e-03

Joint ci ratio: 1.723899e-01	ci left: 1.886064e-03	ci right 2.245636e-03	k: 515	n:250000
Cons ci ratio: 5.267663e-03	ci left: 6.871492e-01	ci right 6.907824e-01	k: 172242	n:250000
KS ci ratio: 3.199700e-01	ci left: 5.041676e-04	ci right 6.997126e-04	k: 149	n:250000
ASAH2   250000 perm   83 sec   (3007 perm/sec)   p_kst 5.960000e-04   p_cons 6.889680e-01   p_joint 2.060000e-03

Joint ci ratio: 1.832083e-01	ci left: 1.596667e-03	ci right 1.922293e-03	k: 456	n:260000
Cons ci ratio: 5.166096e-03	ci left: 6.871242e-01	ci right 6.906870e-01	k: 179116	n:260000
KS ci ratio: 3.078877e-01	ci left: 5.272967e-04	ci right 7.225761e-04	k: 161	n:260000
ASAH2   260000 perm   88 sec   (2968 perm/sec)   p_kst 6.192308e-04   p_cons 6.889077e-01   p_joint 1.753846e-03

Joint ci ratio: 1.800835e-01	ci left: 1.594096e-03	ci right 1.913048e-03	k: 472	n:270000
Cons ci ratio: 5.068697e-03	ci left: 6.872278e-01	ci right 6.907237e-01	k: 186024	n:270000
KS ci ratio: 3.050778e-01	ci left: 5.180235e-04	ci right 7.077777e-04	k: 164	n:270000
ASAH2   270000 perm   92 sec   (2926 perm/sec)   p_kst 6.074074e-04   p_cons 6.889778e-01   p_joint 1.748148e-03

Joint ci ratio: 1.785827e-01	ci left: 1.564451e-03	ci right 1.874580e-03	k: 480	n:280000
Cons ci ratio: 4.978431e-03	ci left: 6.871672e-01	ci right 6.906003e-01	k: 192888	n:280000
KS ci ratio: 3.023433e-01	ci left: 5.094203e-04	ci right 6.940287e-04	k: 167	n:280000
ASAH2   280000 perm   97 sec   (2888 perm/sec)   p_kst 5.964286e-04   p_cons 6.888857e-01   p_joint 1.714286e-03

Joint ci ratio: 1.782173e-01	ci left: 1.517090e-03	ci right 1.817148e-03	k: 482	n:290000
Cons ci ratio: 4.895222e-03	ci left: 6.869007e-01	ci right 6.902749e-01	k: 199691	n:290000
KS ci ratio: 2.979427e-01	ci left: 5.077972e-04	ci right 6.886326e-04	k: 172	n:290000
ASAH2   290000 perm   102 sec   (2849 perm/sec)   p_kst 5.931034e-04   p_cons 6.885897e-01   p_joint 1.662069e-03

Joint ci ratio: 1.751613e-01	ci left: 1.520681e-03	ci right 1.815746e-03	k: 499	n:300000
Cons ci ratio: 4.816195e-03	ci left: 6.866391e-01	ci right 6.899573e-01	k: 206490	n:300000
KS ci ratio: 2.912829e-01	ci left: 5.155672e-04	ci right 6.943093e-04	k: 180	n:300000
ASAH2   300000 perm   107 sec   (2812 perm/sec)   p_kst 6.000000e-04   p_cons 6.883000e-01   p_joint 1.663333e-03

Joint ci ratio: 1.749908e-01	ci left: 1.474708e-03	ci right 1.760545e-03	k: 500	n:310000
Cons ci ratio: 4.741440e-03	ci left: 6.863431e-01	ci right 6.896082e-01	k: 213273	n:310000
KS ci ratio: 2.828136e-01	ci left: 5.318667e-04	ci right 7.099424e-04	k: 191	n:310000
ASAH2   310000 perm   112 sec   (2774 perm/sec)   p_kst 6.161290e-04   p_cons 6.879774e-01   p_joint 1.612903e-03

Joint ci ratio: 1.711055e-01	ci left: 1.497387e-03	ci right 1.780511e-03	k: 523	n:320000
Cons ci ratio: 4.665775e-03	ci left: 6.864603e-01	ci right 6.896738e-01	k: 220182	n:320000
KS ci ratio: 2.764082e-01	ci left: 5.413996e-04	ci right 7.178478e-04	k: 200	n:320000
ASAH2   320000 perm   117 sec   (2739 perm/sec)   p_kst 6.250000e-04   p_cons 6.880688e-01   p_joint 1.634375e-03

Joint ci ratio: 1.679298e-01	ci left: 1.510047e-03	ci right 1.789730e-03	k: 543	n:330000
Cons ci ratio: 4.595955e-03	ci left: 6.863524e-01	ci right 6.895171e-01	k: 227019	n:330000
KS ci ratio: 2.717170e-01	ci left: 5.447483e-04	ci right 7.187608e-04	k: 207	n:330000
ASAH2   330000 perm   122 sec   (2707 perm/sec)   p_kst 6.272727e-04   p_cons 6.879364e-01   p_joint 1.645455e-03

Joint ci ratio: 1.667105e-01	ci left: 1.488177e-03	ci right 1.761606e-03	k: 551	n:340000
Cons ci ratio: 4.528494e-03	ci left: 6.863159e-01	ci right 6.894338e-01	k: 233878	n:340000
KS ci ratio: 2.666371e-01	ci left: 5.506683e-04	ci right 7.227338e-04	k: 215	n:340000
ASAH2   340000 perm   127 sec   (2676 perm/sec)   p_kst 6.323529e-04   p_cons 6.878765e-01   p_joint 1.620588e-03

Joint ci ratio: 1.631986e-01	ci left: 1.511400e-03	ci right 1.782672e-03	k: 575	n:350000
Cons ci ratio: 4.462970e-03	ci left: 6.863734e-01	ci right 6.894463e-01	k: 240769	n:350000
KS ci ratio: 2.624186e-01	ci left: 5.536089e-04	ci right 7.234073e-04	k: 222	n:350000
ASAH2   350000 perm   132 sec   (2645 perm/sec)   p_kst 6.342857e-04   p_cons 6.879114e-01   p_joint 1.642857e-03

Joint ci ratio: 1.612513e-01	ci left: 1.506726e-03	ci right 1.773620e-03	k: 589	n:360000
Cons ci ratio: 4.401604e-03	ci left: 6.862917e-01	ci right 6.893219e-01	k: 247611	n:360000
KS ci ratio: 2.589581e-01	ci left: 5.538086e-04	ci right 7.210660e-04	k: 228	n:360000
ASAH2   360000 perm   138 sec   (2615 perm/sec)   p_kst 6.333333e-04   p_cons 6.878083e-01   p_joint 1.636111e-03

Joint ci ratio: 1.607102e-01	ci left: 1.476377e-03	ci right 1.736933e-03	k: 593	n:370000
Cons ci ratio: 4.343112e-03	ci left: 6.861742e-01	ci right 6.891634e-01	k: 254438	n:370000
KS ci ratio: 2.556310e-01	ci left: 5.540113e-04	ci right 7.188374e-04	k: 234	n:370000
ASAH2   370000 perm   143 sec   (2585 perm/sec)   p_kst 6.324324e-04   p_cons 6.876703e-01   p_joint 1.602703e-03

Joint ci ratio: 1.611216e-01	ci left: 1.429946e-03	ci right 1.683016e-03	k: 590	n:380000
Cons ci ratio: 4.285840e-03	ci left: 6.861685e-01	ci right 6.891182e-01	k: 261305	n:380000
KS ci ratio: 2.534836e-01	ci left: 5.492866e-04	ci right 7.111174e-04	k: 238	n:380000
ASAH2   380000 perm   149 sec   (2555 perm/sec)   p_kst 6.263158e-04   p_cons 6.876447e-01   p_joint 1.552632e-03

Joint ci ratio: 1.205233e-01	ci left: 2.542051e-03	ci right 2.870535e-03	k: 1054	n:390000
Cons ci ratio: 4.231179e-03	ci left: 6.861222e-01	ci right 6.890340e-01	k: 268156	n:390000
KS ci ratio: 2.488408e-01	ci left: 5.568272e-04	ci right 7.174096e-04	k: 247	n:390000
ASAH2   390000 perm   154 sec   (2528 perm/sec)   p_kst 6.333333e-04   p_cons 6.875795e-01   p_joint 2.702564e-03

Joint ci ratio: 1.093061e-01	ci left: 3.029765e-03	ci right 3.382492e-03	k: 1281	n:400000
Cons ci ratio: 4.177998e-03	ci left: 6.861361e-01	ci right 6.890112e-01	k: 275030	n:400000
KS ci ratio: 2.468587e-01	ci left: 5.522852e-04	ci right 7.100945e-04	k: 251	n:400000
ASAH2   400000 perm   160 sec   (2500 perm/sec)   p_kst 6.275000e-04   p_cons 6.875750e-01   p_joint 3.202500e-03

Joint ci ratio: 1.089275e-01	ci left: 2.977216e-03	ci right 3.322547e-03	k: 1290	n:410000
Cons ci ratio: 4.125462e-03	ci left: 6.862862e-01	ci right 6.891257e-01	k: 281960	n:410000
KS ci ratio: 2.439714e-01	ci left: 5.525491e-04	ci right 7.083074e-04	k: 257	n:410000
ASAH2   410000 perm   166 sec   (2470 perm/sec)   p_kst 6.268293e-04   p_cons 6.877073e-01   p_joint 3.146341e-03

Joint ci ratio: 1.096582e-01	ci left: 2.866952e-03	ci right 3.201867e-03	k: 1273	n:420000
Cons ci ratio: 4.075671e-03	ci left: 6.863436e-01	ci right 6.891490e-01	k: 288854	n:420000
KS ci ratio: 2.384866e-01	ci left: 5.662384e-04	ci right 7.217372e-04	k: 269	n:420000
ASAH2   420000 perm   172 sec   (2443 perm/sec)   p_kst 6.404762e-04   p_cons 6.877476e-01   p_joint 3.030952e-03

Joint ci ratio: 9.045204e-02	ci left: 4.152070e-03	ci right 4.547678e-03	k: 1869	n:430000
Cons ci ratio: 4.028251e-03	ci left: 6.863334e-01	ci right 6.891060e-01	k: 295720	n:430000
KS ci ratio: 2.354538e-01	ci left: 5.683827e-04	ci right 7.221963e-04	k: 276	n:430000
ASAH2   430000 perm   178 sec   (2417 perm/sec)   p_kst 6.418605e-04   p_cons 6.877209e-01   p_joint 4.346512e-03

Joint ci ratio: 8.983151e-02	ci left: 4.115460e-03	ci right 4.504748e-03	k: 1895	n:440000
Cons ci ratio: 3.981037e-03	ci left: 6.864762e-01	ci right 6.892168e-01	k: 302653	n:440000
KS ci ratio: 2.325339e-01	ci left: 5.704415e-04	ci right 7.226227e-04	k: 283	n:440000
ASAH2   440000 perm   184 sec   (2392 perm/sec)   p_kst 6.431818e-04   p_cons 6.878477e-01   p_joint 4.306818e-03

Joint ci ratio: 8.894511e-02	ci left: 4.106561e-03	ci right 4.490975e-03	k: 1933	n:450000
Cons ci ratio: 3.936015e-03	ci left: 6.865506e-01	ci right 6.892603e-01	k: 309558	n:450000
KS ci ratio: 2.289340e-01	ci left: 5.766093e-04	ci right 7.277181e-04	k: 292	n:450000
ASAH2   450000 perm   190 sec   (2367 perm/sec)   p_kst 6.488889e-04   p_cons 6.879067e-01   p_joint 4.295556e-03

Joint ci ratio: 8.846824e-02	ci left: 4.061923e-03	ci right 4.440015e-03	k: 1954	n:460000
Cons ci ratio: 3.892545e-03	ci left: 6.866153e-01	ci right 6.892953e-01	k: 316460	n:460000
KS ci ratio: 2.262472e-01	ci left: 5.784242e-04	ci right 7.279815e-04	k: 299	n:460000
ASAH2   460000 perm   196 sec   (2343 perm/sec)   p_kst 6.500000e-04   p_cons 6.879565e-01   p_joint 4.247826e-03

Joint ci ratio: 8.817834e-02	ci left: 4.002543e-03	ci right 4.373823e-03	k: 1967	n:470000
Cons ci ratio: 3.851133e-03	ci left: 6.866051e-01	ci right 6.892565e-01	k: 323328	n:470000
KS ci ratio: 2.258724e-01	ci left: 5.681242e-04	ci right 7.147410e-04	k: 300	n:470000
ASAH2   470000 perm   203 sec   (2319 perm/sec)   p_kst 6.382979e-04   p_cons 6.879319e-01   p_joint 4.185106e-03

Joint ci ratio: 8.827232e-02	ci left: 3.910999e-03	ci right 4.274194e-03	k: 1963	n:480000
Cons ci ratio: 3.812014e-03	ci left: 6.864827e-01	ci right 6.891067e-01	k: 330142	n:480000
KS ci ratio: 2.240198e-01	ci left: 5.661179e-04	ci right 7.108533e-04	k: 305	n:480000
ASAH2   480000 perm   209 sec   (2296 perm/sec)   p_kst 6.354167e-04   p_cons 6.877958e-01   p_joint 4.089583e-03

Joint ci ratio: 1.140750e-01	ci left: 2.266908e-03	ci right 2.543110e-03	k: 1177	n:490000
Cons ci ratio: 3.773148e-03	ci left: 6.864698e-01	ci right 6.890668e-01	k: 337007	n:490000
KS ci ratio: 2.321330e-01	ci left: 5.141535e-04	ci right 6.510476e-04	k: 284	n:490000
ASAH2   490000 perm   216 sec   (2273 perm/sec)   p_kst 5.795918e-04   p_cons 6.877694e-01   p_joint 2.402041e-03

Joint ci ratio: 1.135954e-01	ci left: 2.240998e-03	ci right 2.512819e-03	k: 1187	n:500000
Cons ci ratio: 3.734977e-03	ci left: 6.865115e-01	ci right 6.890823e-01	k: 343899	n:500000
KS ci ratio: 2.297274e-01	ci left: 5.151762e-04	ci right 6.507196e-04	k: 290	n:500000
ASAH2   500000 perm   222 sec   (2251 perm/sec)   p_kst 5.800000e-04   p_cons 6.877980e-01   p_joint 2.374000e-03

Joint ci ratio: 1.128390e-01	ci left: 2.227541e-03	ci right 2.495810e-03	k: 1203	n:510000
Cons ci ratio: 3.697756e-03	ci left: 6.865733e-01	ci right 6.891187e-01	k: 350802	n:510000
KS ci ratio: 2.277790e-01	ci left: 5.143169e-04	ci right 6.483252e-04	k: 295	n:510000
ASAH2   510000 perm   229 sec   (2229 perm/sec)   p_kst 5.784314e-04   p_cons 6.878471e-01   p_joint 2.358824e-03

Joint ci ratio: 1.136006e-01	ci left: 2.154801e-03	ci right 2.416179e-03	k: 1187	n:520000
Cons ci ratio: 3.661544e-03	ci left: 6.866425e-01	ci right 6.891631e-01	k: 357710	n:520000
KS ci ratio: 2.247615e-01	ci left: 5.189390e-04	ci right 6.521124e-04	k: 303	n:520000
ASAH2   520000 perm   236 sec   (2207 perm/sec)   p_kst 5.826923e-04   p_cons 6.879038e-01   p_joint 2.282692e-03

Joint ci ratio: 1.133642e-01	ci left: 2.123308e-03	ci right 2.380294e-03	k: 1192	n:530000
Cons ci ratio: 3.627347e-03	ci left: 6.865939e-01	ci right 6.890908e-01	k: 364557	n:530000
KS ci ratio: 2.232976e-01	ci left: 5.162712e-04	ci right 6.477785e-04	k: 307	n:530000
ASAH2   530000 perm   243 sec   (2185 perm/sec)   p_kst 5.792453e-04   p_cons 6.878434e-01   p_joint 2.249057e-03

Joint ci ratio: 1.121484e-01	ci left: 2.130779e-03	ci right 2.385720e-03	k: 1218	n:540000
Cons ci ratio: 3.592742e-03	ci left: 6.867086e-01	ci right 6.891820e-01	k: 371491	n:540000
KS ci ratio: 2.197577e-01	ci left: 5.242020e-04	ci right 6.553266e-04	k: 317	n:540000
ASAH2   540000 perm   250 sec   (2164 perm/sec)   p_kst 5.870370e-04   p_cons 6.879463e-01   p_joint 2.255556e-03

Joint ci ratio: 1.112398e-01	ci left: 2.127385e-03	ci right 2.379723e-03	k: 1238	n:550000
Cons ci ratio: 3.560843e-03	ci left: 6.866099e-01	ci right 6.890609e-01	k: 378310	n:550000
KS ci ratio: 2.170442e-01	ci left: 5.284210e-04	ci right 6.587513e-04	k: 325	n:550000
ASAH2   550000 perm   257 sec   (2143 perm/sec)   p_kst 5.909091e-04   p_cons 6.878364e-01   p_joint 2.250909e-03

Joint ci ratio: 1.103530e-01	ci left: 2.124120e-03	ci right 2.373931e-03	k: 1258	n:560000
Cons ci ratio: 3.528589e-03	ci left: 6.866595e-01	ci right 6.890885e-01	k: 385210	n:560000
KS ci ratio: 2.157251e-01	ci left: 5.257406e-04	ci right 6.545173e-04	k: 329	n:560000
ASAH2   560000 perm   264 sec   (2123 perm/sec)   p_kst 5.875000e-04   p_cons 6.878750e-01   p_joint 2.246429e-03

Joint ci ratio: 1.095299e-01	ci left: 2.119271e-03	ci right 2.366533e-03	k: 1277	n:570000
Cons ci ratio: 3.496539e-03	ci left: 6.867884e-01	ci right 6.891957e-01	k: 392156	n:570000
KS ci ratio: 2.141093e-01	ci left: 5.248168e-04	ci right 6.522780e-04	k: 334	n:570000
ASAH2   570000 perm   271 sec   (2103 perm/sec)   p_kst 5.859649e-04   p_cons 6.879930e-01   p_joint 2.240351e-03

Joint ci ratio: 1.084322e-01	ci left: 2.126338e-03	ci right 2.371780e-03	k: 1303	n:580000
Cons ci ratio: 3.466654e-03	ci left: 6.867506e-01	ci right 6.891372e-01	k: 399008	n:580000
KS ci ratio: 2.109827e-01	ci left: 5.320922e-04	ci right 6.591893e-04	k: 344	n:580000
ASAH2   580000 perm   278 sec   (2084 perm/sec)   p_kst 5.931034e-04   p_cons 6.879448e-01   p_joint 2.246552e-03

Joint ci ratio: 1.102716e-01	ci left: 2.019404e-03	ci right 2.256713e-03	k: 1260	n:590000
Cons ci ratio: 3.438432e-03	ci left: 6.866005e-01	ci right 6.889671e-01	k: 405793	n:590000
KS ci ratio: 2.091717e-01	ci left: 5.327082e-04	ci right 6.587203e-04	k: 350	n:590000
ASAH2   590000 perm   286 sec   (2065 perm/sec)   p_kst 5.932203e-04   p_cons 6.877847e-01   p_joint 2.135593e-03

Joint ci ratio: 1.091941e-01	ci left: 2.026271e-03	ci right 2.261911e-03	k: 1285	n:600000
Cons ci ratio: 3.411124e-03	ci left: 6.864255e-01	ci right 6.887726e-01	k: 412560	n:600000
KS ci ratio: 2.065400e-01	ci left: 5.380491e-04	ci right 6.635210e-04	k: 359	n:600000
ASAH2   600000 perm   293 sec   (2046 perm/sec)   p_kst 5.983333e-04   p_cons 6.876000e-01   p_joint 2.141667e-03

Joint ci ratio: 1.096671e-01	ci left: 1.975511e-03	ci right 2.206308e-03	k: 1274	n:610000
Cons ci ratio: 3.382687e-03	ci left: 6.864812e-01	ci right 6.888089e-01	k: 419464	n:610000
KS ci ratio: 2.054023e-01	ci left: 5.354478e-04	ci right 6.595389e-04	k: 363	n:610000
ASAH2   610000 perm   301 sec   (2028 perm/sec)   p_kst 5.950820e-04   p_cons 6.876459e-01   p_joint 2.088525e-03

Joint ci ratio: 1.100589e-01	ci left: 1.929528e-03	ci right 2.155810e-03	k: 1265	n:620000
Cons ci ratio: 3.354408e-03	ci left: 6.866045e-01	ci right 6.889131e-01	k: 426411	n:620000
KS ci ratio: 2.042833e-01	ci left: 5.329321e-04	ci right 6.556833e-04	k: 367	n:620000
ASAH2   620000 perm   308 sec   (2011 perm/sec)   p_kst 5.919355e-04   p_cons 6.877597e-01   p_joint 2.040323e-03

Joint ci ratio: 1.088609e-01	ci left: 1.942129e-03	ci right 2.167251e-03	k: 1293	n:630000
Cons ci ratio: 3.328572e-03	ci left: 6.864984e-01	ci right 6.887888e-01	k: 433216	n:630000
KS ci ratio: 2.026380e-01	ci left: 5.335115e-04	ci right 6.552840e-04	k: 373	n:630000
ASAH2   630000 perm   316 sec   (1993 perm/sec)   p_kst 5.920635e-04   p_cons 6.876444e-01   p_joint 2.052381e-03

Joint ci ratio: 1.113476e-01	ci left: 1.825167e-03	ci right 2.041881e-03	k: 1236	n:640000
Cons ci ratio: 3.302831e-03	ci left: 6.864598e-01	ci right 6.887323e-01	k: 440062	n:640000
KS ci ratio: 2.018306e-01	ci left: 5.296254e-04	ci right 6.499699e-04	k: 376	n:640000
ASAH2   640000 perm   324 sec   (1976 perm/sec)   p_kst 5.875000e-04   p_cons 6.875969e-01   p_joint 1.931250e-03

Joint ci ratio: 1.104142e-01	ci left: 1.828500e-03	ci right 2.043670e-03	k: 1257	n:650000
Cons ci ratio: 3.277455e-03	ci left: 6.864517e-01	ci right 6.887067e-01	k: 446927	n:650000
KS ci ratio: 1.997224e-01	ci left: 5.331664e-04	ci right 6.528958e-04	k: 384	n:650000
ASAH2   650000 perm   332 sec   (1958 perm/sec)   p_kst 5.907692e-04   p_cons 6.875800e-01   p_joint 1.933846e-03

Joint ci ratio: 1.095897e-01	ci left: 1.828791e-03	ci right 2.042285e-03	k: 1276	n:660000
Cons ci ratio: 3.252506e-03	ci left: 6.864636e-01	ci right 6.887014e-01	k: 453805	n:660000
KS ci ratio: 1.979309e-01	ci left: 5.351663e-04	ci right 6.541368e-04	k: 391	n:660000
ASAH2   660000 perm   340 sec   (1941 perm/sec)   p_kst 5.924242e-04   p_cons 6.875833e-01   p_joint 1.933333e-03

Joint ci ratio: 1.088676e-01	ci left: 1.826175e-03	ci right 2.037870e-03	k: 1293	n:670000
Cons ci ratio: 3.228387e-03	ci left: 6.864394e-01	ci right 6.886605e-01	k: 460659	n:670000
KS ci ratio: 1.966807e-01	ci left: 5.342727e-04	ci right 6.522045e-04	k: 396	n:670000
ASAH2   670000 perm   348 sec   (1924 perm/sec)   p_kst 5.910448e-04   p_cons 6.875507e-01   p_joint 1.929851e-03

Joint ci ratio: 1.080359e-01	ci left: 1.827934e-03	ci right 2.038110e-03	k: 1313	n:680000
Cons ci ratio: 3.205170e-03	ci left: 6.863659e-01	ci right 6.885708e-01	k: 467479	n:680000
KS ci ratio: 1.956976e-01	ci left: 5.320091e-04	ci right 6.487842e-04	k: 400	n:680000
ASAH2   680000 perm   356 sec   (1908 perm/sec)   p_kst 5.882353e-04   p_cons 6.874691e-01   p_joint 1.930882e-03

Joint ci ratio: 1.121760e-01	ci left: 1.667543e-03	ci right 1.867112e-03	k: 1218	n:690000
Cons ci ratio: 3.181137e-03	ci left: 6.864716e-01	ci right 6.886602e-01	k: 474421	n:690000
KS ci ratio: 1.952119e-01	ci left: 5.270554e-04	ci right 6.424220e-04	k: 402	n:690000
ASAH2   690000 perm   365 sec   (1893 perm/sec)   p_kst 5.826087e-04   p_cons 6.875667e-01   p_joint 1.765217e-03

Joint ci ratio: 1.115376e-01	ci left: 1.663162e-03	ci right 1.860998e-03	k: 1232	n:700000
Cons ci ratio: 3.158781e-03	ci left: 6.864184e-01	ci right 6.885915e-01	k: 481254	n:700000
KS ci ratio: 1.933024e-01	ci left: 5.303989e-04	ci right 6.452281e-04	k: 410	n:700000
ASAH2   700000 perm   373 sec   (1877 perm/sec)   p_kst 5.857143e-04   p_cons 6.875057e-01   p_joint 1.760000e-03

Joint ci ratio: 1.017892e-01	ci left: 1.978378e-03	ci right 2.191914e-03	k: 1479	n:710000
Cons ci ratio: 3.137034e-03	ci left: 6.863471e-01	ci right 6.885049e-01	k: 488073	n:710000
KS ci ratio: 1.921374e-01	ci left: 5.296310e-04	ci right 6.435220e-04	k: 415	n:710000
ASAH2   710000 perm   381 sec   (1862 perm/sec)   p_kst 5.845070e-04   p_cons 6.874268e-01   p_joint 2.083099e-03

Joint ci ratio: 1.010072e-01	ci left: 1.982035e-03	ci right 2.194225e-03	k: 1502	n:720000
Cons ci ratio: 3.114622e-03	ci left: 6.864307e-01	ci right 6.885734e-01	k: 495002	n:720000
KS ci ratio: 1.909931e-01	ci left: 5.288864e-04	ci right 6.418614e-04	k: 420	n:720000
ASAH2   720000 perm   390 sec   (1848 perm/sec)   p_kst 5.833333e-04   p_cons 6.875028e-01   p_joint 2.086111e-03

Joint ci ratio: 1.004742e-01	ci left: 1.976249e-03	ci right 2.186637e-03	k: 1518	n:730000
Cons ci ratio: 3.093067e-03	ci left: 6.864586e-01	ci right 6.885865e-01	k: 501892	n:730000
KS ci ratio: 1.896465e-01	ci left: 5.294689e-04	ci right 6.416791e-04	k: 426	n:730000
ASAH2   730000 perm   398 sec   (1833 perm/sec)   p_kst 5.835616e-04   p_cons 6.875233e-01   p_joint 2.079452e-03

Joint ci ratio: 9.985178e-02	ci left: 1.974576e-03	ci right 2.183407e-03	k: 1537	n:740000
Cons ci ratio: 3.071935e-03	ci left: 6.864885e-01	ci right 6.886019e-01	k: 508784	n:740000
KS ci ratio: 1.872493e-01	ci left: 5.364777e-04	ci right 6.485728e-04	k: 437	n:740000
ASAH2   740000 perm   407 sec   (1818 perm/sec)   p_kst 5.905405e-04   p_cons 6.875459e-01   p_joint 2.077027e-03

Joint ci ratio: 9.924079e-02	ci left: 1.972950e-03	ci right 2.180259e-03	k: 1556	n:750000
Cons ci ratio: 3.051496e-03	ci left: 6.864803e-01	ci right 6.885796e-01	k: 515648	n:750000
KS ci ratio: 1.861897e-01	ci left: 5.356797e-04	ci right 6.469031e-04	k: 442	n:750000
ASAH2   750000 perm   416 sec   (1804 perm/sec)   p_kst 5.893333e-04   p_cons 6.875307e-01   p_joint 2.074667e-03

Joint ci ratio: 9.854693e-02	ci left: 1.975222e-03	ci right 2.181234e-03	k: 1578	n:760000
Cons ci ratio: 3.031709e-03	ci left: 6.864368e-01	ci right 6.885223e-01	k: 522485	n:760000
KS ci ratio: 1.843263e-01	ci left: 5.399244e-04	ci right 6.507818e-04	k: 451	n:760000
ASAH2   760000 perm   425 sec   (1790 perm/sec)   p_kst 5.934211e-04   p_cons 6.874803e-01   p_joint 2.076316e-03

Joint ci ratio: 9.795944e-02	ci left: 1.973639e-03	ci right 2.178188e-03	k: 1597	n:770000
Cons ci ratio: 3.011046e-03	ci left: 6.865738e-01	ci right 6.886455e-01	k: 529460	n:770000
KS ci ratio: 1.837180e-01	ci left: 5.366289e-04	ci right 6.464055e-04	k: 454	n:770000
ASAH2   770000 perm   434 sec   (1776 perm/sec)   p_kst 5.896104e-04   p_cons 6.876104e-01   p_joint 2.074026e-03

Joint ci ratio: 9.738233e-02	ci left: 1.972100e-03	ci right 2.175217e-03	k: 1616	n:780000
Cons ci ratio: 2.992174e-03	ci left: 6.865098e-01	ci right 6.885683e-01	k: 536281	n:780000
KS ci ratio: 1.829160e-01	ci left: 5.346419e-04	ci right 6.434816e-04	k: 458	n:780000
ASAH2   780000 perm   443 sec   (1762 perm/sec)   p_kst 5.871795e-04   p_cons 6.875397e-01   p_joint 2.071795e-03

Joint ci ratio: 1.011516e-01	ci left: 1.801468e-03	ci right 1.994619e-03	k: 1498	n:790000
Cons ci ratio: 2.972873e-03	ci left: 6.865602e-01	ci right 6.886055e-01	k: 543191	n:790000
KS ci ratio: 1.811483e-01	ci left: 5.387477e-04	ci right 6.472471e-04	k: 467	n:790000
ASAH2   790000 perm   452 sec   (1749 perm/sec)   p_kst 5.911392e-04   p_cons 6.875835e-01   p_joint 1.896203e-03

Joint ci ratio: 1.014925e-01	ci left: 1.766765e-03	ci right 1.956871e-03	k: 1488	n:800000
Cons ci ratio: 2.953451e-03	ci left: 6.866807e-01	ci right 6.887130e-01	k: 550158	n:800000
KS ci ratio: 1.801884e-01	ci left: 5.379807e-04	ci right 6.456889e-04	k: 472	n:800000
ASAH2   800000 perm   461 sec   (1735 perm/sec)   p_kst 5.900000e-04   p_cons 6.876975e-01   p_joint 1.860000e-03

Joint ci ratio: 1.011201e-01	ci left: 1.758189e-03	ci right 1.946637e-03	k: 1499	n:810000
Cons ci ratio: 2.935332e-03	ci left: 6.866623e-01	ci right 6.886820e-01	k: 557015	n:810000
KS ci ratio: 1.790563e-01	ci left: 5.384133e-04	ci right 6.454575e-04	k: 478	n:810000
ASAH2   810000 perm   470 sec   (1722 perm/sec)   p_kst 5.901235e-04   p_cons 6.876728e-01   p_joint 1.850617e-03

Joint ci ratio: 1.004526e-01	ci left: 1.760523e-03	ci right 1.947902e-03	k: 1519	n:820000
Cons ci ratio: 2.917608e-03	ci left: 6.866346e-01	ci right 6.886421e-01	k: 563864	n:820000
KS ci ratio: 1.783135e-01	ci left: 5.365071e-04	ci right 6.426822e-04	k: 482	n:820000
ASAH2   820000 perm   480 sec   (1709 perm/sec)   p_kst 5.878049e-04   p_cons 6.876390e-01   p_joint 1.852439e-03

Joint ci ratio: 9.983055e-02	ci left: 1.761630e-03	ci right 1.947898e-03	k: 1538	n:830000
Cons ci ratio: 2.899925e-03	ci left: 6.866487e-01	ci right 6.886440e-01	k: 570747	n:830000
KS ci ratio: 1.773978e-01	ci left: 5.357991e-04	ci right 6.412310e-04	k: 487	n:830000
ASAH2   830000 perm   489 sec   (1697 perm/sec)   p_kst 5.867470e-04   p_cons 6.876470e-01   p_joint 1.853012e-03

Joint ci ratio: 8.882732e-02	ci left: 2.210324e-03	ci right 2.416941e-03	k: 1942	n:840000
Cons ci ratio: 2.882983e-03	ci left: 6.865993e-01	ci right 6.885828e-01	k: 577577	n:840000
KS ci ratio: 1.766754e-01	ci left: 5.339714e-04	ci right 6.385701e-04	k: 491	n:840000
ASAH2   840000 perm   499 sec   (1684 perm/sec)   p_kst 5.845238e-04   p_cons 6.875917e-01   p_joint 2.311905e-03

Joint ci ratio: 8.898934e-02	ci left: 2.176267e-03	ci right 2.380090e-03	k: 1935	n:850000
Cons ci ratio: 2.866350e-03	ci left: 6.865487e-01	ci right 6.885206e-01	k: 584405	n:850000
KS ci ratio: 1.756078e-01	ci left: 5.344370e-04	ci right 6.384272e-04	k: 497	n:850000
ASAH2   850000 perm   508 sec   (1672 perm/sec)   p_kst 5.847059e-04   p_cons 6.875353e-01   p_joint 2.276471e-03

Joint ci ratio: 8.857876e-02	ci left: 2.171426e-03	ci right 2.373810e-03	k: 1953	n:860000
Cons ci ratio: 2.850048e-03	ci left: 6.864924e-01	ci right 6.884529e-01	k: 591227	n:860000
KS ci ratio: 1.752567e-01	ci left: 5.304460e-04	ci right 6.334313e-04	k: 499	n:860000
ASAH2   860000 perm   518 sec   (1659 perm/sec)   p_kst 5.802326e-04   p_cons 6.874733e-01   p_joint 2.270930e-03

Joint ci ratio: 8.810666e-02	ci left: 2.170072e-03	ci right 2.371196e-03	k: 1974	n:870000
Cons ci ratio: 2.833157e-03	ci left: 6.865685e-01	ci right 6.885176e-01	k: 598163	n:870000
KS ci ratio: 1.740425e-01	ci left: 5.320432e-04	ci right 6.345478e-04	k: 506	n:870000
ASAH2   870000 perm   528 sec   (1647 perm/sec)   p_kst 5.816092e-04   p_cons 6.875437e-01   p_joint 2.268966e-03

Joint ci ratio: 1.019133e-01	ci left: 1.592853e-03	ci right 1.764999e-03	k: 1476	n:880000
Cons ci ratio: 2.691112e-03	ci left: 7.058920e-01	ci right 7.077953e-01	k: 622023	n:880000
KS ci ratio: 1.733601e-01	ci left: 5.303450e-04	ci right 6.320800e-04	k: 510	n:880000
ASAH2   880000 perm   538 sec   (1636 perm/sec)   p_kst 5.795455e-04   p_cons 7.068443e-01   p_joint 1.677273e-03

Joint ci ratio: 1.017075e-01	ci left: 1.581525e-03	ci right 1.752081e-03	k: 1482	n:890000
Cons ci ratio: 2.676092e-03	ci left: 7.058755e-01	ci right 7.077681e-01	k: 629072	n:890000
KS ci ratio: 1.723512e-01	ci left: 5.308360e-04	ci right 6.320109e-04	k: 516	n:890000
ASAH2   890000 perm   548 sec   (1624 perm/sec)   p_kst 5.797753e-04   p_cons 7.068225e-01   p_joint 1.665169e-03

Joint ci ratio: 1.010621e-01	ci left: 1.584529e-03	ci right 1.754260e-03	k: 1501	n:900000
Cons ci ratio: 2.661135e-03	ci left: 7.058883e-01	ci right 7.077704e-01	k: 636147	n:900000
KS ci ratio: 1.716885e-01	ci left: 5.291909e-04	ci right 6.296242e-04	k: 520	n:900000
ASAH2   900000 perm   558 sec   (1612 perm/sec)   p_kst 5.777778e-04   p_cons 7.068300e-01   p_joint 1.667778e-03

Joint ci ratio: 1.006943e-01	ci left: 1.578899e-03	ci right 1.747375e-03	k: 1512	n:910000
Cons ci ratio: 2.646643e-03	ci left: 7.058668e-01	ci right 7.077385e-01	k: 643191	n:910000
KS ci ratio: 1.708706e-01	ci left: 5.286346e-04	ci right 6.284351e-04	k: 525	n:910000
ASAH2   910000 perm   569 sec   (1600 perm/sec)   p_kst 5.769231e-04   p_cons 7.068033e-01   p_joint 1.661538e-03

Joint ci ratio: 1.001333e-01	ci left: 1.579751e-03	ci right 1.747324e-03	k: 1529	n:920000
Cons ci ratio: 2.632172e-03	ci left: 7.058795e-01	ci right 7.077410e-01	k: 650266	n:920000
KS ci ratio: 1.699043e-01	ci left: 5.291322e-04	ci right 6.284039e-04	k: 531	n:920000
ASAH2   920000 perm   579 sec   (1589 perm/sec)   p_kst 5.771739e-04   p_cons 7.068109e-01   p_joint 1.661957e-03

Joint ci ratio: 9.980806e-02	ci left: 1.573248e-03	ci right 1.739558e-03	k: 1539	n:930000
Cons ci ratio: 2.618085e-03	ci left: 7.058682e-01	ci right 7.077197e-01	k: 657319	n:930000
KS ci ratio: 1.686409e-01	ci left: 5.316804e-04	ci right 6.306130e-04	k: 539	n:930000
ASAH2   930000 perm   589 sec   (1578 perm/sec)   p_kst 5.795699e-04   p_cons 7.067946e-01   p_joint 1.654839e-03

Joint ci ratio: 9.945379e-02	ci left: 1.567922e-03	ci right 1.733046e-03	k: 1550	n:940000
Cons ci ratio: 2.604242e-03	ci left: 7.058541e-01	ci right 7.076957e-01	k: 664369	n:940000
KS ci ratio: 1.680199e-01	ci left: 5.301002e-04	ci right 6.283388e-04	k: 543	n:940000
ASAH2   940000 perm   600 sec   (1567 perm/sec)   p_kst 5.776596e-04   p_cons 7.067755e-01   p_joint 1.648936e-03

Joint ci ratio: 9.885004e-02	ci left: 1.570922e-03	ci right 1.735299e-03	k: 1569	n:950000
Cons ci ratio: 2.590714e-03	ci left: 7.058244e-01	ci right 7.076564e-01	k: 671404	n:950000
KS ci ratio: 1.675587e-01	ci left: 5.275454e-04	ci right 6.250152e-04	k: 546	n:950000
ASAH2   950000 perm   610 sec   (1557 perm/sec)   p_kst 5.747368e-04   p_cons 7.067411e-01   p_joint 1.651579e-03

Joint ci ratio: 9.825715e-02	ci left: 1.573862e-03	ci right 1.737502e-03	k: 1588	n:960000
Cons ci ratio: 2.577201e-03	ci left: 7.058267e-01	ci right 7.076491e-01	k: 678469	n:960000
KS ci ratio: 1.666473e-01	ci left: 5.280388e-04	ci right 6.250158e-04	k: 552	n:960000
ASAH2   960000 perm   621 sec   (1546 perm/sec)   p_kst 5.750000e-04   p_cons 7.067385e-01   p_joint 1.654167e-03

Joint ci ratio: 9.779672e-02	ci left: 1.572721e-03	ci right 1.735432e-03	k: 1603	n:970000
Cons ci ratio: 2.563623e-03	ci left: 7.058733e-01	ci right 7.076863e-01	k: 685577	n:970000
KS ci ratio: 1.657505e-01	ci left: 5.285234e-04	ci right 6.250149e-04	k: 558	n:970000
ASAH2   970000 perm   632 sec   (1535 perm/sec)   p_kst 5.752577e-04   p_cons 7.067804e-01   p_joint 1.652577e-03

Joint ci ratio: 9.746337e-02	ci left: 1.567623e-03	ci right 1.729223e-03	k: 1614	n:980000
Cons ci ratio: 2.550760e-03	ci left: 7.058373e-01	ci right 7.076410e-01	k: 692605	n:980000
KS ci ratio: 1.647222e-01	ci left: 5.299778e-04	ci right 6.260751e-04	k: 565	n:980000
ASAH2   980000 perm   642 sec   (1525 perm/sec)   p_kst 5.765306e-04   p_cons 7.067398e-01   p_joint 1.646939e-03

Joint ci ratio: 9.961890e-02	ci left: 1.483806e-03	ci right 1.640346e-03	k: 1545	n:990000
Cons ci ratio: 2.538125e-03	ci left: 7.057960e-01	ci right 7.075907e-01	k: 699627	n:990000
KS ci ratio: 1.627214e-01	ci left: 5.381867e-04	ci right 6.344712e-04	k: 579	n:990000
ASAH2   990000 perm   653 sec   (1515 perm/sec)   p_kst 5.848485e-04   p_cons 7.066939e-01   p_joint 1.560606e-03

Joint ci ratio: 9.907560e-02	ci left: 1.485546e-03	ci right 1.641364e-03	k: 1562	n:1000000
Cons ci ratio: 2.525500e-03	ci left: 7.057846e-01	ci right 7.075702e-01	k: 706678	n:1000000
KS ci ratio: 1.617481e-01	ci left: 5.395207e-04	ci right 6.354104e-04	k: 586	n:1000000
ASAH2   1000000 perm   664 sec   (1506 perm/sec)   p_kst 5.860000e-04   p_cons 7.066780e-01   p_joint 1.562000e-03

Joint ci ratio: 9.942740e-02	ci left: 1.460216e-03	ci right 1.613953e-03	k: 1551	n:1010000
Cons ci ratio: 2.512539e-03	ci left: 7.058596e-01	ci right 7.076363e-01	k: 713816	n:1010000
KS ci ratio: 1.607922e-01	ci left: 5.408299e-04	ci right 6.363293e-04	k: 593	n:1010000
ASAH2   1010000 perm   675 sec   (1496 perm/sec)   p_kst 5.871287e-04   p_cons 7.067485e-01   p_joint 1.535644e-03

Joint ci ratio: 9.895039e-02	ci left: 1.460241e-03	ci right 1.613200e-03	k: 1566	n:1020000
Cons ci ratio: 2.500384e-03	ci left: 7.058321e-01	ci right 7.076001e-01	k: 720851	n:1020000
KS ci ratio: 1.599862e-01	ci left: 5.411739e-04	ci right 6.362091e-04	k: 599	n:1020000
ASAH2   1020000 perm   686 sec   (1486 perm/sec)   p_kst 5.872549e-04   p_cons 7.067167e-01   p_joint 1.535294e-03

Joint ci ratio: 9.914140e-02	ci left: 1.440382e-03	ci right 1.591570e-03	k: 1560	n:1030000
Cons ci ratio: 2.488160e-03	ci left: 7.058459e-01	ci right 7.076053e-01	k: 727928	n:1030000
KS ci ratio: 1.595879e-01	ci left: 5.387159e-04	ci right 6.330613e-04	k: 602	n:1030000
ASAH2   1030000 perm   698 sec   (1477 perm/sec)   p_kst 5.844660e-04   p_cons 7.067262e-01   p_joint 1.514563e-03

Joint ci ratio: 9.873124e-02	ci left: 1.438723e-03	ci right 1.589075e-03	k: 1573	n:1040000
Cons ci ratio: 2.476090e-03	ci left: 7.058634e-01	ci right 7.076143e-01	k: 735009	n:1040000
KS ci ratio: 1.589304e-01	ci left: 5.381520e-04	ci right 6.319734e-04	k: 607	n:1040000
ASAH2   1040000 perm   709 sec   (1467 perm/sec)   p_kst 5.836538e-04   p_cons 7.067394e-01   p_joint 1.512500e-03

Joint ci ratio: 9.823319e-02	ci left: 1.439884e-03	ci right 1.589555e-03	k: 1589	n:1050000
Cons ci ratio: 2.464182e-03	ci left: 7.058825e-01	ci right 7.076250e-01	k: 742092	n:1050000
KS ci ratio: 1.581520e-01	ci left: 5.385144e-04	ci right 6.318954e-04	k: 613	n:1050000
ASAH2   1050000 perm   720 sec   (1458 perm/sec)   p_kst 5.838095e-04   p_cons 7.067543e-01   p_joint 1.513333e-03

Joint ci ratio: 9.765129e-02	ci left: 1.443785e-03	ci right 1.592922e-03	k: 1608	n:1060000
Cons ci ratio: 2.452233e-03	ci left: 7.059371e-01	ci right 7.076712e-01	k: 749213	n:1060000
KS ci ratio: 1.568793e-01	ci left: 5.424963e-04	ci right 6.357395e-04	k: 623	n:1060000
ASAH2   1060000 perm   732 sec   (1449 perm/sec)   p_kst 5.877358e-04   p_cons 7.068047e-01   p_joint 1.516981e-03

Joint ci ratio: 9.786542e-02	ci left: 1.423909e-03	ci right 1.571334e-03	k: 1601	n:1070000
Cons ci ratio: 2.440747e-03	ci left: 7.059411e-01	ci right 7.076671e-01	k: 756281	n:1070000
KS ci ratio: 1.565038e-01	ci left: 5.401200e-04	ci right 6.327117e-04	k: 626	n:1070000
ASAH2   1070000 perm   743 sec   (1440 perm/sec)   p_kst 5.850467e-04   p_cons 7.068047e-01   p_joint 1.496262e-03

Joint ci ratio: 9.732007e-02	ci left: 1.426985e-03	ci right 1.573858e-03	k: 1619	n:1080000
Cons ci ratio: 2.429307e-03	ci left: 7.059645e-01	ci right 7.076825e-01	k: 763370	n:1080000
KS ci ratio: 1.558835e-01	ci left: 5.395675e-04	ci right 6.316637e-04	k: 631	n:1080000
ASAH2   1080000 perm   755 sec   (1431 perm/sec)   p_kst 5.842593e-04   p_cons 7.068241e-01   p_joint 1.499074e-03

Joint ci ratio: 9.681333e-02	ci left: 1.429111e-03	ci right 1.575393e-03	k: 1636	n:1090000
Cons ci ratio: 2.418428e-03	ci left: 7.059187e-01	ci right 7.076288e-01	k: 770384	n:1090000
KS ci ratio: 1.552706e-01	ci left: 5.390259e-04	ci right 6.306342e-04	k: 636	n:1090000
ASAH2   1090000 perm   767 sec   (1422 perm/sec)   p_kst 5.834862e-04   p_cons 7.067743e-01   p_joint 1.500917e-03

Joint ci ratio: 9.631443e-02	ci left: 1.431200e-03	ci right 1.576899e-03	k: 1653	n:1100000
Cons ci ratio: 2.407552e-03	ci left: 7.058982e-01	ci right 7.076007e-01	k: 777425	n:1100000
KS ci ratio: 1.543045e-01	ci left: 5.411168e-04	ci right 6.324553e-04	k: 644	n:1100000
ASAH2   1100000 perm   778 sec   (1413 perm/sec)   p_kst 5.854545e-04   p_cons 7.067500e-01   p_joint 1.502727e-03

Joint ci ratio: 8.980659e-02	ci left: 1.636544e-03	ci right 1.791300e-03	k: 1901	n:1110000
Cons ci ratio: 2.396471e-03	ci left: 7.059386e-01	ci right 7.076333e-01	k: 784533	n:1110000
KS ci ratio: 1.535918e-01	ci left: 5.414390e-04	ci right 6.323710e-04	k: 650	n:1110000
ASAH2   1110000 perm   790 sec   (1405 perm/sec)   p_kst 5.855856e-04   p_cons 7.067865e-01   p_joint 1.712613e-03

Joint ci ratio: 8.947801e-02	ci left: 1.634152e-03	ci right 1.788086e-03	k: 1915	n:1120000
Cons ci ratio: 2.385872e-03	ci left: 7.059211e-01	ci right 7.076082e-01	k: 791577	n:1120000
KS ci ratio: 1.531222e-01	ci left: 5.400391e-04	ci right 6.304332e-04	k: 654	n:1120000
ASAH2   1120000 perm   802 sec   (1396 perm/sec)   p_kst 5.839286e-04   p_cons 7.067652e-01   p_joint 1.709821e-03

Joint ci ratio: 8.919932e-02	ci left: 1.630072e-03	ci right 1.783119e-03	k: 1927	n:1130000
Cons ci ratio: 2.375188e-03	ci left: 7.059429e-01	ci right 7.076225e-01	k: 798665	n:1130000
KS ci ratio: 1.527729e-01	ci left: 5.378132e-04	ci right 6.276106e-04	k: 657	n:1130000
ASAH2   1130000 perm   814 sec   (1387 perm/sec)   p_kst 5.814159e-04   p_cons 7.067832e-01   p_joint 1.705310e-03

Joint ci ratio: 8.869453e-02	ci left: 1.634643e-03	ci right 1.787205e-03	k: 1949	n:1140000
Cons ci ratio: 2.364577e-03	ci left: 7.059766e-01	ci right 7.076487e-01	k: 805767	n:1140000
KS ci ratio: 1.519667e-01	ci left: 5.390018e-04	ci right 6.284795e-04	k: 664	n:1140000
ASAH2   1140000 perm   827 sec   (1379 perm/sec)   p_kst 5.824561e-04   p_cons 7.068132e-01   p_joint 1.709649e-03

Joint ci ratio: 8.876361e-02	ci left: 1.617877e-03	ci right 1.768998e-03	k: 1946	n:1150000
Cons ci ratio: 2.354126e-03	ci left: 7.060062e-01	ci right 7.076710e-01	k: 812865	n:1150000
KS ci ratio: 1.512857e-01	ci left: 5.393343e-04	ci right 6.284297e-04	k: 670	n:1150000
ASAH2   1150000 perm   839 sec   (1371 perm/sec)   p_kst 5.826087e-04   p_cons 7.068391e-01   p_joint 1.692174e-03

Joint ci ratio: 8.826614e-02	ci left: 1.622476e-03	ci right 1.773133e-03	k: 1968	n:1160000
Cons ci ratio: 2.344271e-03	ci left: 7.059542e-01	ci right 7.076120e-01	k: 819869	n:1160000
KS ci ratio: 1.503917e-01	ci left: 5.413212e-04	ci right 6.301688e-04	k: 678	n:1160000
ASAH2   1160000 perm   851 sec   (1362 perm/sec)   p_kst 5.844828e-04   p_cons 7.067836e-01   p_joint 1.696552e-03

Joint ci ratio: 8.784325e-02	ci left: 1.624490e-03	ci right 1.774575e-03	k: 1987	n:1170000
Cons ci ratio: 2.334201e-03	ci left: 7.059631e-01	ci right 7.076137e-01	k: 826943	n:1170000
KS ci ratio: 1.497316e-01	ci left: 5.416301e-04	ci right 6.301033e-04	k: 684	n:1170000
ASAH2   1170000 perm   864 sec   (1354 perm/sec)   p_kst 5.846154e-04   p_cons 7.067889e-01   p_joint 1.698291e-03

Joint ci ratio: 8.744822e-02	ci left: 1.625643e-03	ci right 1.775125e-03	k: 2005	n:1180000
Cons ci ratio: 2.324337e-03	ci left: 7.059582e-01	ci right 7.076018e-01	k: 834001	n:1180000
KS ci ratio: 1.491881e-01	ci left: 5.411189e-04	ci right 6.291591e-04	k: 689	n:1180000
ASAH2   1180000 perm   877 sec   (1346 perm/sec)   p_kst 5.838983e-04   p_cons 7.067805e-01   p_joint 1.699153e-03

Joint ci ratio: 8.786665e-02	ci left: 1.596365e-03	ci right 1.743893e-03	k: 1986	n:1190000
Cons ci ratio: 2.314845e-03	ci left: 7.059088e-01	ci right 7.075456e-01	k: 841006	n:1190000
KS ci ratio: 1.489726e-01	ci left: 5.381896e-04	ci right 6.256154e-04	k: 691	n:1190000
ASAH2   1190000 perm   889 sec   (1338 perm/sec)   p_kst 5.806723e-04   p_cons 7.067277e-01   p_joint 1.668908e-03

Joint ci ratio: 8.782300e-02	ci left: 1.584691e-03	ci right 1.731064e-03	k: 1988	n:1200000
Cons ci ratio: 2.305148e-03	ci left: 7.059179e-01	ci right 7.075478e-01	k: 848080	n:1200000
KS ci ratio: 1.483310e-01	ci left: 5.385187e-04	ci right 6.255878e-04	k: 697	n:1200000
ASAH2   1200000 perm   902 sec   (1330 perm/sec)   p_kst 5.808333e-04   p_cons 7.067333e-01   p_joint 1.656667e-03

Joint ci ratio: 8.753753e-02	ci left: 1.582103e-03	ci right 1.727737e-03	k: 2001	n:1210000
Cons ci ratio: 2.295440e-03	ci left: 7.059508e-01	ci right 7.075739e-01	k: 855183	n:1210000
KS ci ratio: 1.475927e-01	ci left: 5.396391e-04	ci right 6.264168e-04	k: 704	n:1210000
ASAH2   1210000 perm   915 sec   (1322 perm/sec)   p_kst 5.818182e-04   p_cons 7.067628e-01   p_joint 1.653719e-03

Joint ci ratio: 8.706029e-02	ci left: 1.586774e-03	ci right 1.732001e-03	k: 2023	n:1220000
Cons ci ratio: 2.285853e-03	ci left: 7.059831e-01	ci right 7.075995e-01	k: 862286	n:1220000
KS ci ratio: 1.465567e-01	ci left: 5.431110e-04	ci right 6.297803e-04	k: 714	n:1220000
ASAH2   1220000 perm   928 sec   (1314 perm/sec)   p_kst 5.852459e-04   p_cons 7.067918e-01   p_joint 1.658197e-03

Joint ci ratio: 8.671822e-02	ci left: 1.586599e-03	ci right 1.731211e-03	k: 2039	n:1230000
Cons ci ratio: 2.276608e-03	ci left: 7.059743e-01	ci right 7.075841e-01	k: 869339	n:1230000
KS ci ratio: 1.460470e-01	ci left: 5.426117e-04	ci right 6.288739e-04	k: 719	n:1230000
ASAH2   1230000 perm   941 sec   (1307 perm/sec)   p_kst 5.845528e-04   p_cons 7.067797e-01   p_joint 1.657724e-03

Joint ci ratio: 8.635912e-02	ci left: 1.587217e-03	ci right 1.731256e-03	k: 2056	n:1240000
Cons ci ratio: 2.267303e-03	ci left: 7.059971e-01	ci right 7.076004e-01	k: 876431	n:1240000
KS ci ratio: 1.452422e-01	ci left: 5.444523e-04	ci right 6.304888e-04	k: 727	n:1240000
ASAH2   1240000 perm   955 sec   (1299 perm/sec)   p_kst 5.862903e-04   p_cons 7.067992e-01   p_joint 1.658065e-03

Joint ci ratio: 8.598369e-02	ci left: 1.588609e-03	ci right 1.732116e-03	k: 2074	n:1250000
Cons ci ratio: 2.258024e-03	ci left: 7.060355e-01	ci right 7.076323e-01	k: 883543	n:1250000
KS ci ratio: 1.440593e-01	ci left: 5.493494e-04	ci right 6.353920e-04	k: 739	n:1250000
ASAH2   1250000 perm   968 sec   (1292 perm/sec)   p_kst 5.912000e-04   p_cons 7.068344e-01   p_joint 1.659200e-03

Joint ci ratio: 8.569517e-02	ci left: 1.586873e-03	ci right 1.729719e-03	k: 2088	n:1260000
Cons ci ratio: 2.249064e-03	ci left: 7.060352e-01	ci right 7.076257e-01	k: 890607	n:1260000
KS ci ratio: 1.434788e-01	ci left: 5.495801e-04	ci right 6.352823e-04	k: 745	n:1260000
ASAH2   1260000 perm   981 sec   (1284 perm/sec)   p_kst 5.912698e-04   p_cons 7.068310e-01   p_joint 1.657143e-03

Joint ci ratio: 8.265964e-02	ci left: 1.694632e-03	ci right 1.841513e-03	k: 2244	n:1270000
Cons ci ratio: 2.240326e-03	ci left: 7.060137e-01	ci right 7.075979e-01	k: 897644	n:1270000
KS ci ratio: 1.428103e-01	ci left: 5.505671e-04	ci right 6.359891e-04	k: 752	n:1270000
ASAH2   1270000 perm   994 sec   (1277 perm/sec)   p_kst 5.921260e-04   p_cons 7.068063e-01   p_joint 1.766929e-03

Joint ci ratio: 8.222112e-02	ci left: 1.699756e-03	ci right 1.846263e-03	k: 2268	n:1280000
Cons ci ratio: 2.232092e-03	ci left: 7.059175e-01	ci right 7.074957e-01	k: 904585	n:1280000
KS ci ratio: 1.418712e-01	ci left: 5.538002e-04	ci right 6.391109e-04	k: 762	n:1280000
ASAH2   1280000 perm   1008 sec   (1270 perm/sec)   p_kst 5.953125e-04   p_cons 7.067070e-01   p_joint 1.771875e-03

Joint ci ratio: 8.184315e-02	ci left: 1.702525e-03	ci right 1.848564e-03	k: 2289	n:1290000
Cons ci ratio: 2.223486e-03	ci left: 7.059088e-01	ci right 7.074809e-01	k: 911637	n:1290000
KS ci ratio: 1.412248e-01	ci left: 5.547413e-04	ci right 6.397749e-04	k: 769	n:1290000
ASAH2   1290000 perm   1021 sec   (1263 perm/sec)   p_kst 5.961240e-04   p_cons 7.066953e-01   p_joint 1.774419e-03

Joint ci ratio: 8.240435e-02	ci left: 1.666071e-03	ci right 1.810010e-03	k: 2258	n:1300000
Cons ci ratio: 2.214432e-03	ci left: 7.060028e-01	ci right 7.075686e-01	k: 918822	n:1300000
KS ci ratio: 1.409506e-01	ci left: 5.527003e-04	ci right 6.372427e-04	k: 772	n:1300000
ASAH2   1300000 perm   1035 sec   (1256 perm/sec)   p_kst 5.938462e-04   p_cons 7.067862e-01   p_joint 1.736923e-03

Joint ci ratio: 8.213219e-02	ci left: 1.664568e-03	ci right 1.807879e-03	k: 2273	n:1310000
Cons ci ratio: 2.205964e-03	ci left: 7.060059e-01	ci right 7.075657e-01	k: 925890	n:1310000
KS ci ratio: 1.402268e-01	ci left: 5.543733e-04	ci right 6.386998e-04	k: 780	n:1310000
ASAH2   1310000 perm   1049 sec   (1249 perm/sec)   p_kst 5.954198e-04   p_cons 7.067863e-01   p_joint 1.735115e-03

Joint ci ratio: 8.229603e-02	ci left: 1.645279e-03	ci right 1.787225e-03	k: 2264	n:1320000
Cons ci ratio: 2.197547e-03	ci left: 7.060173e-01	ci right 7.075712e-01	k: 932969	n:1320000
KS ci ratio: 1.395139e-01	ci left: 5.560221e-04	ci right 6.401336e-04	k: 788	n:1320000
ASAH2   1320000 perm   1062 sec   (1243 perm/sec)   p_kst 5.969697e-04   p_cons 7.067947e-01   p_joint 1.715152e-03

Joint ci ratio: 8.197093e-02	ci left: 1.646164e-03	ci right 1.787599e-03	k: 2282	n:1330000
Cons ci ratio: 2.189143e-03	ci left: 7.060443e-01	ci right 7.075924e-01	k: 940069	n:1330000
KS ci ratio: 1.388991e-01	ci left: 5.569213e-04	ci right 6.407669e-04	k: 795	n:1330000
ASAH2   1330000 perm   1076 sec   (1236 perm/sec)   p_kst 5.977444e-04   p_cons 7.068188e-01   p_joint 1.715789e-03

Joint ci ratio: 8.175651e-02	ci left: 1.642651e-03	ci right 1.783397e-03	k: 2294	n:1340000
Cons ci ratio: 2.181105e-03	ci left: 7.060194e-01	ci right 7.075617e-01	k: 947100	n:1340000
KS ci ratio: 1.382923e-01	ci left: 5.578080e-04	ci right 6.413900e-04	k: 802	n:1340000
ASAH2   1340000 perm   1090 sec   (1229 perm/sec)   p_kst 5.985075e-04   p_cons 7.067910e-01   p_joint 1.711940e-03

Joint ci ratio: 8.149070e-02	ci left: 1.641368e-03	ci right 1.781525e-03	k: 2309	n:1350000
Cons ci ratio: 2.173214e-03	ci left: 7.059838e-01	ci right 7.075205e-01	k: 954116	n:1350000
KS ci ratio: 1.378638e-01	ci left: 5.572518e-04	ci right 6.404705e-04	k: 807	n:1350000
ASAH2   1350000 perm   1104 sec   (1223 perm/sec)   p_kst 5.977778e-04   p_cons 7.067526e-01   p_joint 1.710370e-03

Joint ci ratio: 8.112268e-02	ci left: 1.644426e-03	ci right 1.784180e-03	k: 2330	n:1360000
Cons ci ratio: 2.165104e-03	ci left: 7.060069e-01	ci right 7.075378e-01	k: 961211	n:1360000
KS ci ratio: 1.372704e-01	ci left: 5.581243e-04	ci right 6.410853e-04	k: 814	n:1360000
ASAH2   1360000 perm   1119 sec   (1216 perm/sec)   p_kst 5.985294e-04   p_cons 7.067728e-01   p_joint 1.713235e-03

Joint ci ratio: 8.209916e-02	ci left: 1.593094e-03	ci right 1.730194e-03	k: 2275	n:1370000
Cons ci ratio: 2.157190e-03	ci left: 7.060092e-01	ci right 7.075345e-01	k: 968278	n:1370000
KS ci ratio: 1.368513e-01	ci left: 5.575749e-04	ci right 6.401805e-04	k: 819	n:1370000
ASAH2   1370000 perm   1133 sec   (1209 perm/sec)   p_kst 5.978102e-04   p_cons 7.067723e-01   p_joint 1.660584e-03

Joint ci ratio: 8.179425e-02	ci left: 1.593617e-03	ci right 1.730228e-03	k: 2292	n:1380000
Cons ci ratio: 2.148964e-03	ci left: 7.060883e-01	ci right 7.076080e-01	k: 975451	n:1380000
KS ci ratio: 1.362709e-01	ci left: 5.584337e-04	ci right 6.407872e-04	k: 826	n:1380000
ASAH2   1380000 perm   1147 sec   (1203 perm/sec)   p_kst 5.985507e-04   p_cons 7.068486e-01   p_joint 1.660870e-03

Joint ci ratio: 8.149271e-02	ci left: 1.594132e-03	ci right 1.730260e-03	k: 2309	n:1390000
Cons ci ratio: 2.141207e-03	ci left: 7.060935e-01	ci right 7.076078e-01	k: 982523	n:1390000
KS ci ratio: 1.359426e-01	ci left: 5.571958e-04	ci right 6.391528e-04	k: 830	n:1390000
ASAH2   1390000 perm   1162 sec   (1197 perm/sec)   p_kst 5.971223e-04   p_cons 7.068511e-01   p_joint 1.661151e-03

Joint ci ratio: 8.121196e-02	ci left: 1.593942e-03	ci right 1.729562e-03	k: 2325	n:1400000
Cons ci ratio: 2.133372e-03	ci left: 7.061302e-01	ci right 7.076389e-01	k: 989639	n:1400000
KS ci ratio: 1.352928e-01	ci left: 5.587363e-04	ci right 6.404955e-04	k: 838	n:1400000
ASAH2   1400000 perm   1176 sec   (1190 perm/sec)   p_kst 5.985714e-04   p_cons 7.068850e-01   p_joint 1.660714e-03

Joint ci ratio: 8.151134e-02	ci left: 1.570825e-03	ci right 1.704994e-03	k: 2308	n:1410000
Cons ci ratio: 2.126033e-03	ci left: 7.060862e-01	ci right 7.075896e-01	k: 996642	n:1410000
KS ci ratio: 1.350517e-01	ci left: 5.568293e-04	ci right 6.381526e-04	k: 841	n:1410000
ASAH2   1410000 perm   1191 sec   (1184 perm/sec)   p_kst 5.964539e-04   p_cons 7.068383e-01   p_joint 1.636879e-03

Joint ci ratio: 8.109078e-02	ci left: 1.576321e-03	ci right 1.710232e-03	k: 2332	n:1420000
Cons ci ratio: 2.118787e-03	ci left: 7.060392e-01	ci right 7.075374e-01	k: 1003640	n:1420000
KS ci ratio: 1.342566e-01	ci left: 5.597131e-04	ci right 6.409378e-04	k: 851	n:1420000
ASAH2   1420000 perm   1206 sec   (1178 perm/sec)   p_kst 5.992958e-04   p_cons 7.067887e-01   p_joint 1.642254e-03

Joint ci ratio: 8.093503e-02	ci left: 1.571464e-03	ci right 1.704694e-03	k: 2341	n:1430000
Cons ci ratio: 2.111201e-03	ci left: 7.060741e-01	ci right 7.075670e-01	k: 1010754	n:1430000
KS ci ratio: 1.340995e-01	ci left: 5.571506e-04	ci right 6.379013e-04	k: 853	n:1430000
ASAH2   1430000 perm   1221 sec   (1172 perm/sec)   p_kst 5.965035e-04   p_cons 7.068210e-01   p_joint 1.637063e-03

Joint ci ratio: 8.067712e-02	ci left: 1.570757e-03	ci right 1.703483e-03	k: 2356	n:1440000
Cons ci ratio: 2.103785e-03	ci left: 7.060912e-01	ci right 7.075788e-01	k: 1017843	n:1440000
KS ci ratio: 1.335533e-01	ci left: 5.579799e-04	ci right 6.384952e-04	k: 860	n:1440000
ASAH2   1440000 perm   1235 sec   (1166 perm/sec)   p_kst 5.972222e-04   p_cons 7.068354e-01   p_joint 1.636111e-03

Joint ci ratio: 8.043865e-02	ci left: 1.569385e-03	ci right 1.701584e-03	k: 2370	n:1450000
Cons ci ratio: 2.096407e-03	ci left: 7.061156e-01	ci right 7.075981e-01	k: 1024943	n:1450000
KS ci ratio: 1.331672e-01	ci left: 5.574649e-04	ci right 6.376550e-04	k: 865	n:1450000
ASAH2   1450000 perm   1250 sec   (1160 perm/sec)   p_kst 5.965517e-04   p_cons 7.068572e-01   p_joint 1.634483e-03

Joint ci ratio: 8.020228e-02	ci left: 1.568032e-03	ci right 1.699711e-03	k: 2384	n:1460000
Cons ci ratio: 2.089366e-03	ci left: 7.060882e-01	ci right 7.075657e-01	k: 1031968	n:1460000
KS ci ratio: 1.328608e-01	ci left: 5.562952e-04	ci right 6.361184e-04	k: 869	n:1460000
ASAH2   1460000 perm   1265 sec   (1154 perm/sec)   p_kst 5.952055e-04   p_cons 7.068274e-01   p_joint 1.632877e-03

Joint ci ratio: 8.050760e-02	ci left: 1.545365e-03	ci right 1.675658e-03	k: 2366	n:1470000
Cons ci ratio: 2.082067e-03	ci left: 7.061267e-01	ci right 7.075991e-01	k: 1039089	n:1470000
KS ci ratio: 1.325565e-01	ci left: 5.551416e-04	ci right 6.346025e-04	k: 873	n:1470000
ASAH2   1470000 perm   1280 sec   (1148 perm/sec)   p_kst 5.938776e-04   p_cons 7.068633e-01   p_joint 1.609524e-03

Joint ci ratio: 8.038906e-02	ci left: 1.539558e-03	ci right 1.669161e-03	k: 2373	n:1480000
Cons ci ratio: 2.074962e-03	ci left: 7.061409e-01	ci right 7.076083e-01	k: 1046175	n:1480000
KS ci ratio: 1.324053e-01	ci left: 5.526972e-04	ci right 6.317108e-04	k: 875	n:1480000
ASAH2   1480000 perm   1295 sec   (1142 perm/sec)   p_kst 5.912162e-04   p_cons 7.068750e-01   p_joint 1.603378e-03

Joint ci ratio: 7.641396e-02	ci left: 1.695702e-03	ci right 1.831078e-03	k: 2626	n:1490000
Cons ci ratio: 2.068154e-03	ci left: 7.061100e-01	ci right 7.075725e-01	k: 1053194	n:1490000
KS ci ratio: 1.316558e-01	ci left: 5.554776e-04	ci right 6.344040e-04	k: 885	n:1490000
ASAH2   1490000 perm   1311 sec   (1137 perm/sec)   p_kst 5.939597e-04   p_cons 7.068416e-01   p_joint 1.762416e-03

Joint ci ratio: 7.619680e-02	ci left: 1.694207e-03	ci right 1.829062e-03	k: 2641	n:1500000
Cons ci ratio: 2.061084e-03	ci left: 7.061455e-01	ci right 7.076031e-01	k: 1060312	n:1500000
KS ci ratio: 1.312859e-01	ci left: 5.549981e-04	ci right 6.336176e-04	k: 890	n:1500000
ASAH2   1500000 perm   1326 sec   (1131 perm/sec)   p_kst 5.933333e-04   p_cons 7.068747e-01   p_joint 1.760667e-03

Joint ci ratio: 7.721394e-02	ci left: 1.638166e-03	ci right 1.770379e-03	k: 2572	n:1510000
Cons ci ratio: 2.054238e-03	ci left: 7.061501e-01	ci right 7.076028e-01	k: 1067384	n:1510000
KS ci ratio: 1.305551e-01	ci left: 5.577283e-04	ci right 6.362607e-04	k: 900	n:1510000
ASAH2   1510000 perm   1342 sec   (1125 perm/sec)   p_kst 5.960265e-04   p_cons 7.068768e-01   p_joint 1.703311e-03

Joint ci ratio: 7.505381e-02	ci left: 1.724197e-03	ci right 1.859291e-03	k: 2722	n:1520000
Cons ci ratio: 2.047394e-03	ci left: 7.061678e-01	ci right 7.076157e-01	k: 1074476	n:1520000
KS ci ratio: 1.300509e-01	ci left: 5.585142e-04	ci right 6.368300e-04	k: 907	n:1520000
ASAH2   1520000 perm   1357 sec   (1120 perm/sec)   p_kst 5.967105e-04   p_cons 7.068921e-01   p_joint 1.790789e-03

Joint ci ratio: 7.599668e-02	ci left: 1.669963e-03	ci right 1.802523e-03	k: 2655	n:1530000
Cons ci ratio: 2.040820e-03	ci left: 7.061440e-01	ci right 7.075872e-01	k: 1081505	n:1530000
KS ci ratio: 1.298367e-01	ci left: 5.567608e-04	ci right 6.346923e-04	k: 910	n:1530000
ASAH2   1530000 perm   1373 sec   (1115 perm/sec)   p_kst 5.947712e-04   p_cons 7.068660e-01   p_joint 1.735294e-03

Joint ci ratio: 7.616967e-02	ci left: 1.651474e-03	ci right 1.782879e-03	k: 2643	n:1540000
Cons ci ratio: 2.034310e-03	ci left: 7.061206e-01	ci right 7.075591e-01	k: 1088534	n:1540000
KS ci ratio: 1.294819e-01	ci left: 5.562869e-04	ci right 6.339229e-04	k: 915	n:1540000
ASAH2   1540000 perm   1389 sec   (1109 perm/sec)   p_kst 5.941558e-04   p_cons 7.068403e-01   p_joint 1.716234e-03

Joint ci ratio: 7.602621e-02	ci left: 1.647148e-03	ci right 1.777951e-03	k: 2653	n:1550000
Cons ci ratio: 2.027555e-03	ci left: 7.061601e-01	ci right 7.075940e-01	k: 1095660	n:1550000
KS ci ratio: 1.292705e-01	ci left: 5.545708e-04	ci right 6.318312e-04	k: 918	n:1550000
ASAH2   1550000 perm   1405 sec   (1103 perm/sec)   p_kst 5.922581e-04   p_cons 7.068774e-01   p_joint 1.711613e-03

Joint ci ratio: 7.576968e-02	ci left: 1.647909e-03	ci right 1.778311e-03	k: 2671	n:1560000
Cons ci ratio: 2.020927e-03	ci left: 7.061869e-01	ci right 7.076161e-01	k: 1102767	n:1560000
KS ci ratio: 1.290601e-01	ci left: 5.528767e-04	ci right 6.297662e-04	k: 921	n:1560000
ASAH2   1560000 perm   1421 sec   (1098 perm/sec)   p_kst 5.903846e-04   p_cons 7.069019e-01   p_joint 1.712179e-03

Joint ci ratio: 7.557203e-02	ci left: 1.646161e-03	ci right 1.776070e-03	k: 2685	n:1570000
Cons ci ratio: 2.014400e-03	ci left: 7.062058e-01	ci right 7.076304e-01	k: 1109862	n:1570000
KS ci ratio: 1.287812e-01	ci left: 5.518208e-04	ci right 6.283849e-04	k: 925	n:1570000
ASAH2   1570000 perm   1437 sec   (1093 perm/sec)   p_kst 5.891720e-04   p_cons 7.069185e-01   p_joint 1.710191e-03

Joint ci ratio: 7.527824e-02	ci left: 1.648783e-03	ci right 1.778371e-03	k: 2706	n:1580000
Cons ci ratio: 2.008120e-03	ci left: 7.061864e-01	ci right 7.076065e-01	k: 1116897	n:1580000
KS ci ratio: 1.282971e-01	ci left: 5.526162e-04	ci right 6.289805e-04	k: 932	n:1580000
ASAH2   1580000 perm   1453 sec   (1087 perm/sec)   p_kst 5.898734e-04   p_cons 7.068968e-01   p_joint 1.712658e-03

Joint ci ratio: 7.497408e-02	ci left: 1.651990e-03	ci right 1.781282e-03	k: 2728	n:1590000
Cons ci ratio: 2.001919e-03	ci left: 7.061628e-01	ci right 7.075785e-01	k: 1123925	n:1590000
KS ci ratio: 1.278865e-01	ci left: 5.527933e-04	ci right 6.289191e-04	k: 938	n:1590000
ASAH2   1590000 perm   1470 sec   (1082 perm/sec)   p_kst 5.899371e-04   p_cons 7.068711e-01   p_joint 1.715723e-03

Joint ci ratio: 7.474165e-02	ci left: 1.652091e-03	ci right 1.780973e-03	k: 2745	n:1600000
Cons ci ratio: 1.995602e-03	ci left: 7.061759e-01	ci right 7.075871e-01	k: 1131011	n:1600000
KS ci ratio: 1.276151e-01	ci left: 5.517584e-04	ci right 6.275682e-04	k: 942	n:1600000
ASAH2   1600000 perm   1487 sec   (1076 perm/sec)   p_kst 5.887500e-04   p_cons 7.068819e-01   p_joint 1.715625e-03

Joint ci ratio: 7.920043e-02	ci left: 1.459072e-03	ci right 1.580000e-03	k: 2445	n:1610000
Cons ci ratio: 1.989451e-03	ci left: 7.061664e-01	ci right 7.075733e-01	k: 1138061	n:1610000
KS ci ratio: 1.231245e-01	ci left: 5.904472e-04	ci right 6.685101e-04	k: 1012	n:1610000
ASAH2   1610000 perm   1503 sec   (1071 perm/sec)   p_kst 6.285714e-04   p_cons 7.068702e-01   p_joint 1.518634e-03

Joint ci ratio: 8.039465e-02	ci left: 1.406506e-03	ci right 1.524917e-03	k: 2373	n:1620000
Cons ci ratio: 1.983288e-03	ci left: 7.061712e-01	ci right 7.075737e-01	k: 1145134	n:1620000
KS ci ratio: 1.227615e-01	ci left: 5.903923e-04	ci right 6.682010e-04	k: 1018	n:1620000
ASAH2   1620000 perm   1520 sec   (1066 perm/sec)   p_kst 6.283951e-04   p_cons 7.068728e-01   p_joint 1.464815e-03

Joint ci ratio: 8.017547e-02	ci left: 1.405693e-03	ci right 1.523698e-03	k: 2386	n:1630000
Cons ci ratio: 1.977127e-03	ci left: 7.061877e-01	ci right 7.075858e-01	k: 1152226	n:1630000
KS ci ratio: 1.224615e-01	ci left: 5.897437e-04	ci right 6.672632e-04	k: 1023	n:1630000
ASAH2   1630000 perm   1536 sec   (1061 perm/sec)   p_kst 6.276074e-04   p_cons 7.068871e-01   p_joint 1.463804e-03

Joint ci ratio: 7.990807e-02	ci left: 1.406682e-03	ci right 1.524358e-03	k: 2402	n:1640000
Cons ci ratio: 1.971061e-03	ci left: 7.061960e-01	ci right 7.075899e-01	k: 1159305	n:1640000
KS ci ratio: 1.219858e-01	ci left: 5.908766e-04	ci right 6.682216e-04	k: 1031	n:1640000
ASAH2   1640000 perm   1553 sec   (1056 perm/sec)   p_kst 6.286585e-04   p_cons 7.068933e-01   p_joint 1.464634e-03

Joint ci ratio: 7.975899e-02	ci left: 1.403502e-03	ci right 1.520683e-03	k: 2411	n:1650000
Cons ci ratio: 1.965216e-03	ci left: 7.061690e-01	ci right 7.075587e-01	k: 1166326	n:1650000
KS ci ratio: 1.217502e-01	ci left: 5.896458e-04	ci right 6.666699e-04	k: 1035	n:1650000
ASAH2   1650000 perm   1569 sec   (1051 perm/sec)   p_kst 6.272727e-04   p_cons 7.068642e-01   p_joint 1.461212e-03

Joint ci ratio: 8.051503e-02	ci left: 1.368481e-03	ci right 1.483872e-03	k: 2366	n:1660000
Cons ci ratio: 1.959264e-03	ci left: 7.061762e-01	ci right 7.075617e-01	k: 1173403	n:1660000
KS ci ratio: 1.211088e-01	ci left: 5.925190e-04	ci right 6.694814e-04	k: 1046	n:1660000
ASAH2   1660000 perm   1586 sec   (1047 perm/sec)   p_kst 6.301205e-04   p_cons 7.068693e-01   p_joint 1.425301e-03

Joint ci ratio: 8.027798e-02	ci left: 1.368501e-03	ci right 1.483538e-03	k: 2380	n:1670000
Cons ci ratio: 1.953239e-03	ci left: 7.062102e-01	ci right 7.075915e-01	k: 1180525	n:1670000
KS ci ratio: 1.205344e-01	ci left: 5.947781e-04	ci right 6.716414e-04	k: 1056	n:1670000
ASAH2   1670000 perm   1603 sec   (1042 perm/sec)   p_kst 6.323353e-04   p_cons 7.069012e-01   p_joint 1.425150e-03

Joint ci ratio: 8.002628e-02	ci left: 1.369105e-03	ci right 1.483815e-03	k: 2395	n:1680000
Cons ci ratio: 1.947375e-03	ci left: 7.062212e-01	ci right 7.075984e-01	k: 1187609	n:1680000
KS ci ratio: 1.202504e-01	ci left: 5.941243e-04	ci right 6.707094e-04	k: 1061	n:1680000
ASAH2   1680000 perm   1620 sec   (1037 perm/sec)   p_kst 6.315476e-04   p_cons 7.069101e-01   p_joint 1.425595e-03

Joint ci ratio: 7.972727e-02	ci left: 1.371442e-03	ci right 1.485899e-03	k: 2413	n:1690000
Cons ci ratio: 1.941683e-03	ci left: 7.062066e-01	ci right 7.075797e-01	k: 1194650	n:1690000
KS ci ratio: 1.196880e-01	ci left: 5.963484e-04	ci right 6.728353e-04	k: 1071	n:1690000
ASAH2   1690000 perm   1637 sec   (1032 perm/sec)   p_kst 6.337278e-04   p_cons 7.068935e-01   p_joint 1.427811e-03

Joint ci ratio: 7.283113e-02	ci left: 1.639207e-03	ci right 1.763677e-03	k: 2891	n:1700000
Cons ci ratio: 1.935870e-03	ci left: 7.062286e-01	ci right 7.075977e-01	k: 1201753	n:1700000
KS ci ratio: 1.194099e-01	ci left: 5.956937e-04	ci right 6.719065e-04	k: 1076	n:1700000
ASAH2   1700000 perm   1654 sec   (1028 perm/sec)   p_kst 6.329412e-04   p_cons 7.069135e-01   p_joint 1.700588e-03

Joint ci ratio: 7.278110e-02	ci left: 1.631917e-03	ci right 1.755745e-03	k: 2895	n:1710000
Cons ci ratio: 1.930109e-03	ci left: 7.062505e-01	ci right 7.076155e-01	k: 1208856	n:1710000
KS ci ratio: 1.189688e-01	ci left: 5.967490e-04	ci right 6.727950e-04	k: 1084	n:1710000
ASAH2   1710000 perm   1671 sec   (1023 perm/sec)   p_kst 6.339181e-04   p_cons 7.069333e-01   p_joint 1.692982e-03

Joint ci ratio: 7.258089e-02	ci left: 1.631563e-03	ci right 1.755009e-03	k: 2911	n:1720000
Cons ci ratio: 1.924321e-03	ci left: 7.062889e-01	ci right 7.076499e-01	k: 1215988	n:1720000
KS ci ratio: 1.185869e-01	ci left: 5.972284e-04	ci right 6.730740e-04	k: 1091	n:1720000
ASAH2   1720000 perm   1689 sec   (1019 perm/sec)   p_kst 6.343023e-04   p_cons 7.069698e-01   p_joint 1.692442e-03

Joint ci ratio: 7.243191e-02	ci left: 1.628942e-03	ci right 1.751926e-03	k: 2923	n:1730000
Cons ci ratio: 1.918729e-03	ci left: 7.062957e-01	ci right 7.076527e-01	k: 1223066	n:1730000
KS ci ratio: 1.183164e-01	ci left: 5.965808e-04	ci right 6.721592e-04	k: 1096	n:1730000
ASAH2   1730000 perm   1706 sec   (1014 perm/sec)   p_kst 6.335260e-04   p_cons 7.069746e-01   p_joint 1.689595e-03

Joint ci ratio: 7.223457e-02	ci left: 1.628610e-03	ci right 1.751219e-03	k: 2939	n:1740000
Cons ci ratio: 1.913170e-03	ci left: 7.063059e-01	ci right 7.076590e-01	k: 1230150	n:1740000
KS ci ratio: 1.177275e-01	ci left: 5.992874e-04	ci right 6.748045e-04	k: 1107	n:1740000
ASAH2   1740000 perm   1724 sec   (1009 perm/sec)   p_kst 6.362069e-04   p_cons 7.069828e-01   p_joint 1.689080e-03

Joint ci ratio: 7.431472e-02	ci left: 1.528425e-03	ci right 1.646949e-03	k: 2777	n:1750000
Cons ci ratio: 1.907548e-03	ci left: 7.063399e-01	ci right 7.076891e-01	k: 1237276	n:1750000
KS ci ratio: 1.174628e-01	ci left: 5.986360e-04	ci right 6.738897e-04	k: 1112	n:1750000
ASAH2   1750000 perm   1742 sec   (1005 perm/sec)   p_kst 6.354286e-04   p_cons 7.070149e-01   p_joint 1.586857e-03

Joint ci ratio: 7.466583e-02	ci left: 1.505242e-03	ci right 1.622544e-03	k: 2751	n:1760000
Cons ci ratio: 1.902017e-03	ci left: 7.063645e-01	ci right 7.077098e-01	k: 1244386	n:1760000
KS ci ratio: 1.173575e-01	ci left: 5.963376e-04	ci right 6.712305e-04	k: 1114	n:1760000
ASAH2   1760000 perm   1759 sec   (1000 perm/sec)   p_kst 6.329545e-04   p_cons 7.070375e-01   p_joint 1.563068e-03

Joint ci ratio: 7.458478e-02	ci left: 1.500064e-03	ci right 1.616830e-03	k: 2757	n:1770000
Cons ci ratio: 1.896738e-03	ci left: 7.063441e-01	ci right 7.076857e-01	k: 1251417	n:1770000
KS ci ratio: 1.168346e-01	ci left: 5.984527e-04	ci right 6.732533e-04	k: 1124	n:1770000
ASAH2   1770000 perm   1777 sec   (996 perm/sec)   p_kst 6.350282e-04   p_cons 7.070153e-01   p_joint 1.557627e-03

Joint ci ratio: 7.438279e-02	ci left: 1.499907e-03	ci right 1.616331e-03	k: 2772	n:1780000
Cons ci ratio: 1.891398e-03	ci left: 7.063471e-01	ci right 7.076848e-01	k: 1258489	n:1780000
KS ci ratio: 1.166276e-01	ci left: 5.972722e-04	ci right 6.717838e-04	k: 1128	n:1780000
ASAH2   1780000 perm   1795 sec   (992 perm/sec)   p_kst 6.337079e-04   p_cons 7.070163e-01   p_joint 1.557303e-03

Joint ci ratio: 7.599195e-02	ci left: 1.427940e-03	ci right 1.541281e-03	k: 2656	n:1790000
Cons ci ratio: 1.886215e-03	ci left: 7.063254e-01	ci right 7.076594e-01	k: 1265517	n:1790000
KS ci ratio: 1.163189e-01	ci left: 5.971898e-04	ci right 6.714804e-04	k: 1134	n:1790000
ASAH2   1790000 perm   1813 sec   (987 perm/sec)   p_kst 6.335196e-04   p_cons 7.069927e-01   p_joint 1.483799e-03

Joint ci ratio: 7.582099e-02	ci left: 1.426547e-03	ci right 1.539512e-03	k: 2668	n:1800000
Cons ci ratio: 1.880784e-03	ci left: 7.063678e-01	ci right 7.076982e-01	k: 1272660	n:1800000
KS ci ratio: 1.161656e-01	ci left: 5.954902e-04	ci right 6.694651e-04	k: 1137	n:1800000
ASAH2   1800000 perm   1831 sec   (983 perm/sec)   p_kst 6.316667e-04   p_cons 7.070333e-01   p_joint 1.482222e-03

Joint ci ratio: 7.579287e-02	ci left: 1.419749e-03	ci right 1.532132e-03	k: 2670	n:1810000
Cons ci ratio: 1.875542e-03	ci left: 7.063784e-01	ci right 7.077050e-01	k: 1279746	n:1810000
KS ci ratio: 1.159113e-01	ci left: 5.948825e-04	ci right 6.686090e-04	k: 1142	n:1810000
ASAH2   1810000 perm   1849 sec   (979 perm/sec)   p_kst 6.309392e-04   p_cons 7.070420e-01   p_joint 1.475138e-03

Joint ci ratio: 7.655764e-02	ci left: 1.383381e-03	ci right 1.494039e-03	k: 2617	n:1820000
Cons ci ratio: 1.870525e-03	ci left: 7.063486e-01	ci right 7.076716e-01	k: 1286759	n:1820000
KS ci ratio: 1.157091e-01	ci left: 5.937480e-04	ci right 6.671967e-04	k: 1146	n:1820000
ASAH2   1820000 perm   1868 sec   (975 perm/sec)   p_kst 6.296703e-04   p_cons 7.070104e-01   p_joint 1.437912e-03

Joint ci ratio: 7.635377e-02	ci left: 1.383326e-03	ci right 1.493672e-03	k: 2631	n:1830000
Cons ci ratio: 1.865392e-03	ci left: 7.063536e-01	ci right 7.076730e-01	k: 1293835	n:1830000
KS ci ratio: 1.154076e-01	ci left: 5.936874e-04	ci right 6.669243e-04	k: 1152	n:1830000
ASAH2   1830000 perm   1886 sec   (970 perm/sec)   p_kst 6.295082e-04   p_cons 7.070137e-01   p_joint 1.437705e-03

Joint ci ratio: 7.620922e-02	ci left: 1.381139e-03	ci right 1.491092e-03	k: 2641	n:1840000
Cons ci ratio: 1.860263e-03	ci left: 7.063673e-01	ci right 7.076831e-01	k: 1300927	n:1840000
KS ci ratio: 1.152080e-01	ci left: 5.925720e-04	ci right 6.655363e-04	k: 1156	n:1840000
ASAH2   1840000 perm   1904 sec   (966 perm/sec)   p_kst 6.282609e-04   p_cons 7.070255e-01   p_joint 1.435326e-03

Joint ci ratio: 7.599379e-02	ci left: 1.381627e-03	ci right 1.491295e-03	k: 2656	n:1850000
Cons ci ratio: 1.855234e-03	ci left: 7.063679e-01	ci right 7.076801e-01	k: 1307995	n:1850000
KS ci ratio: 1.149105e-01	ci left: 5.925188e-04	ci right 6.652754e-04	k: 1162	n:1850000
ASAH2   1850000 perm   1923 sec   (962 perm/sec)   p_kst 6.281081e-04   p_cons 7.070243e-01   p_joint 1.435676e-03

Joint ci ratio: 7.580858e-02	ci left: 1.381055e-03	ci right 1.490399e-03	k: 2669	n:1860000
Cons ci ratio: 1.850267e-03	ci left: 7.063636e-01	ci right 7.076723e-01	k: 1315054	n:1860000
KS ci ratio: 1.145172e-01	ci left: 5.935109e-04	ci right 6.661230e-04	k: 1170	n:1860000
ASAH2   1860000 perm   1941 sec   (958 perm/sec)   p_kst 6.290323e-04   p_cons 7.070183e-01   p_joint 1.434946e-03

Joint ci ratio: 7.556834e-02	ci left: 1.382589e-03	ci right 1.491692e-03	k: 2686	n:1870000
Cons ci ratio: 1.845461e-03	ci left: 7.063321e-01	ci right 7.076373e-01	k: 1322062	n:1870000
KS ci ratio: 1.141764e-01	ci left: 5.939734e-04	ci right 6.664112e-04	k: 1177	n:1870000
ASAH2   1870000 perm   1960 sec   (954 perm/sec)   p_kst 6.294118e-04   p_cons 7.069850e-01   p_joint 1.436364e-03

Joint ci ratio: 7.602332e-02	ci left: 1.358535e-03	ci right 1.466414e-03	k: 2654	n:1880000
Cons ci ratio: 1.840638e-03	ci left: 7.063132e-01	ci right 7.076149e-01	k: 1329093	n:1880000
KS ci ratio: 1.140798e-01	ci left: 5.918473e-04	ci right 6.639607e-04	k: 1179	n:1880000
ASAH2   1880000 perm   1979 sec   (950 perm/sec)   p_kst 6.271277e-04   p_cons 7.069644e-01   p_joint 1.411702e-03

Joint ci ratio: 7.582367e-02	ci left: 1.358614e-03	ci right 1.466203e-03	k: 2668	n:1890000
Cons ci ratio: 1.835710e-03	ci left: 7.063267e-01	ci right 7.076250e-01	k: 1336185	n:1890000
KS ci ratio: 1.138389e-01	ci left: 5.912860e-04	ci right 6.631685e-04	k: 1184	n:1890000
ASAH2   1890000 perm   1997 sec   (946 perm/sec)   p_kst 6.264550e-04   p_cons 7.069762e-01   p_joint 1.411640e-03

Joint ci ratio: 7.125135e-02	ci left: 1.533845e-03	ci right 1.647683e-03	k: 3021	n:1900000
Cons ci ratio: 1.830884e-03	ci left: 7.063259e-01	ci right 7.076208e-01	k: 1343250	n:1900000
KS ci ratio: 1.133140e-01	ci left: 5.937990e-04	ci right 6.656320e-04	k: 1195	n:1900000
ASAH2   1900000 perm   2016 sec   (942 perm/sec)   p_kst 6.289474e-04   p_cons 7.069737e-01   p_joint 1.590000e-03

Joint ci ratio: 7.106347e-02	ci left: 1.534042e-03	ci right 1.647583e-03	k: 3037	n:1910000
Cons ci ratio: 1.826133e-03	ci left: 7.063168e-01	ci right 7.076083e-01	k: 1350299	n:1910000
KS ci ratio: 1.130309e-01	ci left: 5.937425e-04	ci right 6.653773e-04	k: 1201	n:1910000
ASAH2   1910000 perm   2035 sec   (939 perm/sec)   p_kst 6.287958e-04   p_cons 7.069628e-01   p_joint 1.590052e-03

Joint ci ratio: 7.086545e-02	ci left: 1.534749e-03	ci right 1.648013e-03	k: 3054	n:1920000
Cons ci ratio: 1.821512e-03	ci left: 7.062863e-01	ci right 7.075745e-01	k: 1357307	n:1920000
KS ci ratio: 1.127498e-01	ci left: 5.936869e-04	ci right 6.651250e-04	k: 1207	n:1920000
ASAH2   1920000 perm   2054 sec   (935 perm/sec)   p_kst 6.286458e-04   p_cons 7.069307e-01   p_joint 1.590625e-03

Joint ci ratio: 7.069213e-02	ci left: 1.534432e-03	ci right 1.647383e-03	k: 3069	n:1930000
Cons ci ratio: 1.816806e-03	ci left: 7.062837e-01	ci right 7.075685e-01	k: 1364368	n:1930000
KS ci ratio: 1.124245e-01	ci left: 5.941356e-04	ci right 6.654077e-04	k: 1214	n:1930000
ASAH2   1930000 perm   2073 sec   (931 perm/sec)   p_kst 6.290155e-04   p_cons 7.069264e-01   p_joint 1.590155e-03

Joint ci ratio: 7.055445e-02	ci left: 1.532598e-03	ci right 1.645186e-03	k: 3081	n:1940000
Cons ci ratio: 1.812244e-03	ci left: 7.062563e-01	ci right 7.075379e-01	k: 1371381	n:1940000
KS ci ratio: 1.121480e-01	ci left: 5.940790e-04	ci right 6.651574e-04	k: 1220	n:1940000
ASAH2   1940000 perm   2093 sec   (927 perm/sec)   p_kst 6.288660e-04   p_cons 7.068974e-01   p_joint 1.588144e-03

Joint ci ratio: 7.034927e-02	ci left: 1.533807e-03	ci right 1.646143e-03	k: 3099	n:1950000
Cons ci ratio: 1.807815e-03	ci left: 7.062067e-01	ci right 7.074850e-01	k: 1378350	n:1950000
KS ci ratio: 1.116914e-01	ci left: 5.960171e-04	ci right 6.670180e-04	k: 1230	n:1950000
ASAH2   1950000 perm   2112 sec   (923 perm/sec)   p_kst 6.307692e-04   p_cons 7.068462e-01   p_joint 1.589231e-03

Joint ci ratio: 7.015715e-02	ci left: 1.534503e-03	ci right 1.646570e-03	k: 3116	n:1960000
Cons ci ratio: 1.803274e-03	ci left: 7.061907e-01	ci right 7.074658e-01	k: 1385384	n:1960000
KS ci ratio: 1.114202e-01	ci left: 5.959520e-04	ci right 6.667615e-04	k: 1236	n:1960000
ASAH2   1960000 perm   2131 sec   (920 perm/sec)   p_kst 6.306122e-04   p_cons 7.068286e-01   p_joint 1.589796e-03

Joint ci ratio: 7.079729e-02	ci left: 1.498787e-03	ci right 1.609286e-03	k: 3060	n:1970000
Cons ci ratio: 1.798705e-03	ci left: 7.061891e-01	ci right 7.074610e-01	k: 1392446	n:1970000
KS ci ratio: 1.111063e-01	ci left: 5.963813e-04	ci right 6.670290e-04	k: 1243	n:1970000
ASAH2   1970000 perm   2151 sec   (916 perm/sec)   p_kst 6.309645e-04   p_cons 7.068254e-01   p_joint 1.553299e-03

Joint ci ratio: 7.063597e-02	ci left: 1.498163e-03	ci right 1.608354e-03	k: 3074	n:1980000
Cons ci ratio: 1.794158e-03	ci left: 7.061906e-01	ci right 7.074593e-01	k: 1399514	n:1980000
KS ci ratio: 1.108837e-01	ci left: 5.958244e-04	ci right 6.662555e-04	k: 1248	n:1980000
ASAH2   1980000 perm   2171 sec   (912 perm/sec)   p_kst 6.303030e-04   p_cons 7.068253e-01   p_joint 1.552525e-03

Joint ci ratio: 7.046432e-02	ci left: 1.498039e-03	ci right 1.607942e-03	k: 3089	n:1990000
Cons ci ratio: 1.789692e-03	ci left: 7.061810e-01	ci right 7.074465e-01	k: 1406560	n:1990000
KS ci ratio: 1.106625e-01	ci left: 5.952732e-04	ci right 6.654897e-04	k: 1253	n:1990000
ASAH2   1990000 perm   2190 sec   (909 perm/sec)   p_kst 6.296482e-04   p_cons 7.068141e-01   p_joint 1.552261e-03

Joint ci ratio: 7.021470e-02	ci left: 1.501356e-03	ci right 1.611096e-03	k: 3111	n:2000000
Cons ci ratio: 1.785243e-03	ci left: 7.061756e-01	ci right 7.074378e-01	k: 1413614	n:2000000
KS ci ratio: 1.101366e-01	ci left: 5.981312e-04	ci right 6.683278e-04	k: 1265	n:2000000
ASAH2   2000000 perm   2210 sec   (905 perm/sec)   p_kst 6.325000e-04   p_cons 7.068070e-01   p_joint 1.555500e-03

Joint ci ratio: 7.004610e-02	ci left: 1.501218e-03	ci right 1.610674e-03	k: 3126	n:2010000
Cons ci ratio: 1.780596e-03	ci left: 7.062239e-01	ci right 7.074830e-01	k: 1420776	n:2010000
KS ci ratio: 1.099631e-01	ci left: 5.970907e-04	ci right 6.670476e-04	k: 1269	n:2010000
ASAH2   2010000 perm   2230 sec   (901 perm/sec)   p_kst 6.313433e-04   p_cons 7.068537e-01   p_joint 1.555224e-03

Joint ci ratio: 6.974544e-02	ci left: 1.506919e-03	ci right 1.616300e-03	k: 3153	n:2020000
Cons ci ratio: 1.776201e-03	ci left: 7.062212e-01	ci right 7.074772e-01	k: 1427836	n:2020000
KS ci ratio: 1.097904e-01	ci left: 5.960606e-04	ci right 6.657800e-04	k: 1273	n:2020000
ASAH2   2020000 perm   2250 sec   (898 perm/sec)   p_kst 6.301980e-04   p_cons 7.068495e-01   p_joint 1.560891e-03

Joint ci ratio: 6.961320e-02	ci left: 1.505304e-03	ci right 1.614352e-03	k: 3165	n:2030000
Cons ci ratio: 1.771925e-03	ci left: 7.061984e-01	ci right 7.074513e-01	k: 1434855	n:2030000
KS ci ratio: 1.096614e-01	ci left: 5.945616e-04	ci right 6.640187e-04	k: 1276	n:2030000
ASAH2   2030000 perm   2270 sec   (894 perm/sec)   p_kst 6.285714e-04   p_cons 7.068251e-01   p_joint 1.559113e-03

Joint ci ratio: 6.944888e-02	ci left: 1.505150e-03	ci right 1.613920e-03	k: 3180	n:2040000
Cons ci ratio: 1.767703e-03	ci left: 7.061704e-01	ci right 7.074202e-01	k: 1441863	n:2040000
KS ci ratio: 1.094474e-01	ci left: 5.940309e-04	ci right 6.632818e-04	k: 1281	n:2040000
ASAH2   2040000 perm   2290 sec   (891 perm/sec)   p_kst 6.279412e-04   p_cons 7.067956e-01   p_joint 1.558824e-03

Joint ci ratio: 6.926402e-02	ci left: 1.505957e-03	ci right 1.614483e-03	k: 3197	n:2050000
Cons ci ratio: 1.763261e-03	ci left: 7.062012e-01	ci right 7.074480e-01	k: 1448991	n:2050000
KS ci ratio: 1.091922e-01	ci left: 5.939800e-04	ci right 6.630531e-04	k: 1287	n:2050000
ASAH2   2050000 perm   2311 sec   (887 perm/sec)   p_kst 6.278049e-04   p_cons 7.068249e-01   p_joint 1.559512e-03

Joint ci ratio: 6.914529e-02	ci left: 1.503894e-03	ci right 1.612078e-03	k: 3208	n:2060000
Cons ci ratio: 1.758905e-03	ci left: 7.062196e-01	ci right 7.074633e-01	k: 1456094	n:2060000
KS ci ratio: 1.090653e-01	ci left: 5.925131e-04	ci right 6.613305e-04	k: 1290	n:2060000
ASAH2   2060000 perm   2332 sec   (883 perm/sec)   p_kst 6.262136e-04   p_cons 7.068417e-01   p_joint 1.557282e-03

Joint ci ratio: 6.898425e-02	ci left: 1.503750e-03	ci right 1.611662e-03	k: 3223	n:2070000
Cons ci ratio: 1.754644e-03	ci left: 7.062228e-01	ci right 7.074635e-01	k: 1463166	n:2070000
KS ci ratio: 1.088968e-01	ci left: 5.915304e-04	ci right 6.601207e-04	k: 1294	n:2070000
ASAH2   2070000 perm   2353 sec   (880 perm/sec)   p_kst 6.251208e-04   p_cons 7.068435e-01   p_joint 1.557005e-03

Joint ci ratio: 6.883499e-02	ci left: 1.503135e-03	ci right 1.610760e-03	k: 3237	n:2080000
Cons ci ratio: 1.750576e-03	ci left: 7.061876e-01	ci right 7.074253e-01	k: 1470158	n:2080000
KS ci ratio: 1.087710e-01	ci left: 5.900895e-04	ci right 6.584286e-04	k: 1297	n:2080000
ASAH2   2080000 perm   2374 sec   (876 perm/sec)   p_kst 6.235577e-04   p_cons 7.068067e-01   p_joint 1.556250e-03

Joint ci ratio: 6.866554e-02	ci left: 1.503467e-03	ci right 1.610840e-03	k: 3253	n:2090000
Cons ci ratio: 1.746381e-03	ci left: 7.061895e-01	ci right 7.074243e-01	k: 1477227	n:2090000
KS ci ratio: 1.085621e-01	ci left: 5.895934e-04	ci right 6.577356e-04	k: 1302	n:2090000
ASAH2   2090000 perm   2395 sec   (873 perm/sec)   p_kst 6.229665e-04   p_cons 7.068072e-01   p_joint 1.556459e-03

Joint ci ratio: 6.845542e-02	ci left: 1.505668e-03	ci right 1.612857e-03	k: 3273	n:2100000
Cons ci ratio: 1.742312e-03	ci left: 7.061685e-01	ci right 7.074004e-01	k: 1484248	n:2100000
KS ci ratio: 1.080655e-01	ci left: 5.923454e-04	ci right 6.604725e-04	k: 1314	n:2100000
ASAH2   2100000 perm   2416 sec   (869 perm/sec)   p_kst 6.257143e-04   p_cons 7.067848e-01   p_joint 1.558571e-03

Joint ci ratio: 6.827836e-02	ci left: 1.506452e-03	ci right 1.613407e-03	k: 3290	n:2110000
Cons ci ratio: 1.738101e-03	ci left: 7.061886e-01	ci right 7.074175e-01	k: 1491355	n:2110000
KS ci ratio: 1.077382e-01	ci left: 5.932272e-04	ci right 6.612360e-04	k: 1322	n:2110000
ASAH2   2110000 perm   2436 sec   (866 perm/sec)   p_kst 6.265403e-04   p_cons 7.068033e-01   p_joint 1.559242e-03

Joint ci ratio: 6.812330e-02	ci left: 1.506300e-03	ci right 1.612993e-03	k: 3305	n:2120000
Cons ci ratio: 1.733993e-03	ci left: 7.061909e-01	ci right 7.074170e-01	k: 1498425	n:2120000
KS ci ratio: 1.074543e-01	ci left: 5.936420e-04	ci right 6.615077e-04	k: 1329	n:2120000
ASAH2   2120000 perm   2457 sec   (863 perm/sec)   p_kst 6.268868e-04   p_cons 7.068042e-01   p_joint 1.558962e-03

Joint ci ratio: 6.796928e-02	ci left: 1.506151e-03	ci right 1.612582e-03	k: 3320	n:2130000
Cons ci ratio: 1.729867e-03	ci left: 7.062046e-01	ci right 7.074277e-01	k: 1505519	n:2130000
KS ci ratio: 1.071726e-01	ci left: 5.940532e-04	ci right 6.617766e-04	k: 1336	n:2130000
ASAH2   2130000 perm   2479 sec   (859 perm/sec)   p_kst 6.272300e-04   p_cons 7.068164e-01   p_joint 1.558685e-03

Joint ci ratio: 6.779596e-02	ci left: 1.506922e-03	ci right 1.613126e-03	k: 3337	n:2140000
Cons ci ratio: 1.725725e-03	ci left: 7.062288e-01	ci right 7.074491e-01	k: 1512636	n:2140000
KS ci ratio: 1.068534e-01	ci left: 5.949155e-04	ci right 6.625225e-04	k: 1344	n:2140000
ASAH2   2140000 perm   2501 sec   (856 perm/sec)   p_kst 6.280374e-04   p_cons 7.068393e-01   p_joint 1.559346e-03

Joint ci ratio: 6.478475e-02	ci left: 1.644916e-03	ci right 1.755503e-03	k: 3654	n:2150000
Cons ci ratio: 1.721780e-03	ci left: 7.062129e-01	ci right 7.074303e-01	k: 1519667	n:2150000
KS ci ratio: 1.066159e-01	ci left: 5.948646e-04	ci right 6.623062e-04	k: 1350	n:2150000
ASAH2   2150000 perm   2523 sec   (852 perm/sec)   p_kst 6.279070e-04   p_cons 7.068219e-01   p_joint 1.699535e-03

Joint ci ratio: 6.480277e-02	ci left: 1.636389e-03	ci right 1.746435e-03	k: 3652	n:2160000
Cons ci ratio: 1.717700e-03	ci left: 7.062359e-01	ci right 7.074505e-01	k: 1526782	n:2160000
KS ci ratio: 1.064191e-01	ci left: 5.943638e-04	ci right 6.616164e-04	k: 1355	n:2160000
ASAH2   2160000 perm   2544 sec   (849 perm/sec)   p_kst 6.273148e-04   p_cons 7.068435e-01   p_joint 1.690741e-03

Joint ci ratio: 6.473206e-02	ci left: 1.632475e-03	ci right 1.742133e-03	k: 3660	n:2170000
Cons ci ratio: 1.713734e-03	ci left: 7.062381e-01	ci right 7.074499e-01	k: 1533852	n:2170000
KS ci ratio: 1.063017e-01	ci left: 5.929704e-04	ci right 6.599868e-04	k: 1358	n:2170000
ASAH2   2170000 perm   2565 sec   (846 perm/sec)   p_kst 6.258065e-04   p_cons 7.068442e-01   p_joint 1.686636e-03

Joint ci ratio: 6.459989e-02	ci left: 1.631756e-03	ci right 1.741134e-03	k: 3675	n:2180000
Cons ci ratio: 1.709675e-03	ci left: 7.062696e-01	ci right 7.074785e-01	k: 1540986	n:2180000
KS ci ratio: 1.060290e-01	ci left: 5.933762e-04	ci right 6.602555e-04	k: 1365	n:2180000
ASAH2   2180000 perm   2586 sec   (843 perm/sec)   p_kst 6.261468e-04   p_cons 7.068743e-01   p_joint 1.685780e-03

Joint ci ratio: 6.370374e-02	ci left: 1.671033e-03	ci right 1.781432e-03	k: 3779	n:2190000
Cons ci ratio: 1.705663e-03	ci left: 7.062962e-01	ci right 7.075024e-01	k: 1548110	n:2190000
KS ci ratio: 1.056429e-01	ci left: 5.951120e-04	ci right 6.619277e-04	k: 1375	n:2190000
ASAH2   2190000 perm   2608 sec   (840 perm/sec)   p_kst 6.278539e-04   p_cons 7.068995e-01   p_joint 1.725571e-03

Joint ci ratio: 6.357775e-02	ci left: 1.670147e-03	ci right 1.780262e-03	k: 3794	n:2200000
Cons ci ratio: 1.701887e-03	ci left: 7.062721e-01	ci right 7.074755e-01	k: 1555123	n:2200000
KS ci ratio: 1.054133e-01	ci left: 5.950623e-04	ci right 6.617181e-04	k: 1381	n:2200000
ASAH2   2200000 perm   2630 sec   (837 perm/sec)   p_kst 6.277273e-04   p_cons 7.068741e-01   p_joint 1.724545e-03

Joint ci ratio: 6.341084e-02	ci left: 1.671496e-03	ci right 1.781400e-03	k: 3814	n:2210000
Cons ci ratio: 1.698052e-03	ci left: 7.062686e-01	ci right 7.074693e-01	k: 1562181	n:2210000
KS ci ratio: 1.051473e-01	ci left: 5.954537e-04	ci right 6.619747e-04	k: 1388	n:2210000
ASAH2   2210000 perm   2652 sec   (833 perm/sec)   p_kst 6.280543e-04   p_cons 7.068692e-01   p_joint 1.725792e-03

Joint ci ratio: 6.326177e-02	ci left: 1.671947e-03	ci right 1.781612e-03	k: 3832	n:2220000
Cons ci ratio: 1.694326e-03	ci left: 7.062448e-01	ci right 7.074429e-01	k: 1569194	n:2220000
KS ci ratio: 1.048834e-01	ci left: 5.958418e-04	ci right 6.622288e-04	k: 1395	n:2220000
ASAH2   2220000 perm   2674 sec   (830 perm/sec)   p_kst 6.283784e-04   p_cons 7.068441e-01   p_joint 1.726126e-03

Joint ci ratio: 6.312195e-02	ci left: 1.671952e-03	ci right 1.781366e-03	k: 3849	n:2230000
Cons ci ratio: 1.690560e-03	ci left: 7.062370e-01	ci right 7.074324e-01	k: 1576242	n:2230000
KS ci ratio: 1.046214e-01	ci left: 5.962267e-04	ci right 6.624804e-04	k: 1402	n:2230000
ASAH2   2230000 perm   2696 sec   (827 perm/sec)   p_kst 6.286996e-04   p_cons 7.068350e-01   p_joint 1.726009e-03

Joint ci ratio: 6.320447e-02	ci left: 1.660094e-03	ci right 1.768879e-03	k: 3839	n:2240000
Cons ci ratio: 1.686865e-03	ci left: 7.062181e-01	ci right 7.074108e-01	k: 1583265	n:2240000
KS ci ratio: 1.043613e-01	ci left: 5.966083e-04	ci right 6.627295e-04	k: 1409	n:2240000
ASAH2   2240000 perm   2718 sec   (824 perm/sec)   p_kst 6.290179e-04   p_cons 7.068147e-01   p_joint 1.713839e-03

Joint ci ratio: 6.304866e-02	ci left: 1.661027e-03	ci right 1.769595e-03	k: 3858	n:2250000
Cons ci ratio: 1.683183e-03	ci left: 7.062020e-01	ci right 7.073921e-01	k: 1590294	n:2250000
KS ci ratio: 1.040665e-01	ci left: 5.974196e-04	ci right 6.634322e-04	k: 1417	n:2250000
ASAH2   2250000 perm   2741 sec   (821 perm/sec)   p_kst 6.297778e-04   p_cons 7.067973e-01   p_joint 1.714667e-03

Joint ci ratio: 6.289399e-02	ci left: 1.661952e-03	ci right 1.770305e-03	k: 3877	n:2260000
Cons ci ratio: 1.679359e-03	ci left: 7.062268e-01	ci right 7.074142e-01	k: 1597415	n:2260000
KS ci ratio: 1.038106e-01	ci left: 5.977930e-04	ci right 6.636745e-04	k: 1424	n:2260000
ASAH2   2260000 perm   2764 sec   (818 perm/sec)   p_kst 6.300885e-04   p_cons 7.068208e-01   p_joint 1.715487e-03

Joint ci ratio: 6.275659e-02	ci left: 1.662002e-03	ci right 1.770113e-03	k: 3894	n:2270000
Cons ci ratio: 1.675831e-03	ci left: 7.061848e-01	ci right 7.073697e-01	k: 1604385	n:2270000
KS ci ratio: 1.035927e-01	ci left: 5.977341e-04	ci right 6.634625e-04	k: 1430	n:2270000
ASAH2   2270000 perm   2788 sec   (814 perm/sec)   p_kst 6.299559e-04   p_cons 7.067775e-01   p_joint 1.715419e-03

Joint ci ratio: 6.260406e-02	ci left: 1.662915e-03	ci right 1.770813e-03	k: 3913	n:2280000
Cons ci ratio: 1.672194e-03	ci left: 7.061757e-01	ci right 7.073580e-01	k: 1611429	n:2280000
KS ci ratio: 1.032326e-01	ci left: 5.993851e-04	ci right 6.650519e-04	k: 1440	n:2280000
ASAH2   2280000 perm   2811 sec   (811 perm/sec)   p_kst 6.315789e-04   p_cons 7.067671e-01   p_joint 1.716228e-03

Joint ci ratio: 6.251635e-02	ci left: 1.660382e-03	ci right 1.767959e-03	k: 3924	n:2290000
Cons ci ratio: 1.668653e-03	ci left: 7.061487e-01	ci right 7.073285e-01	k: 1618432	n:2290000
KS ci ratio: 1.031253e-01	ci left: 5.980439e-04	ci right 6.634916e-04	k: 1443	n:2290000
ASAH2   2290000 perm   2834 sec   (808 perm/sec)   p_kst 6.301310e-04   p_cons 7.067389e-01   p_joint 1.713537e-03

Joint ci ratio: 6.241314e-02	ci left: 1.658727e-03	ci right 1.766012e-03	k: 3937	n:2300000
Cons ci ratio: 1.665054e-03	ci left: 7.061420e-01	ci right 7.073192e-01	k: 1625481	n:2300000
KS ci ratio: 1.029829e-01	ci left: 5.971380e-04	ci right 6.623908e-04	k: 1447	n:2300000
ASAH2   2300000 perm   2858 sec   (805 perm/sec)   p_kst 6.291304e-04   p_cons 7.067309e-01   p_joint 1.711739e-03

Joint ci ratio: 6.223946e-02	ci left: 1.660921e-03	ci right 1.768040e-03	k: 3959	n:2310000
Cons ci ratio: 1.661547e-03	ci left: 7.061181e-01	ci right 7.072927e-01	k: 1632490	n:2310000
KS ci ratio: 1.026290e-01	ci left: 5.987707e-04	ci right 6.639636e-04	k: 1457	n:2310000
ASAH2   2310000 perm   2880 sec   (802 perm/sec)   p_kst 6.307359e-04   p_cons 7.067056e-01   p_joint 1.713853e-03

Joint ci ratio: 6.251705e-02	ci left: 1.638911e-03	ci right 1.745098e-03	k: 3924	n:2320000
Cons ci ratio: 1.658014e-03	ci left: 7.061064e-01	ci right 7.072785e-01	k: 1639527	n:2320000
KS ci ratio: 1.024886e-01	ci left: 5.978697e-04	ci right 6.628701e-04	k: 1461	n:2320000
ASAH2   2320000 perm   2903 sec   (799 perm/sec)   p_kst 6.297414e-04   p_cons 7.066927e-01   p_joint 1.691379e-03

Joint ci ratio: 6.257319e-02	ci left: 1.628919e-03	ci right 1.734557e-03	k: 3917	n:2330000
Cons ci ratio: 1.654361e-03	ci left: 7.061304e-01	ci right 7.073000e-01	k: 1646647	n:2330000
KS ci ratio: 1.023138e-01	ci left: 5.973947e-04	ci right 6.622260e-04	k: 1466	n:2330000
ASAH2   2330000 perm   2927 sec   (796 perm/sec)   p_kst 6.291845e-04   p_cons 7.067155e-01   p_joint 1.681116e-03

Joint ci ratio: 6.241405e-02	ci left: 1.630372e-03	ci right 1.735825e-03	k: 3937	n:2340000
Cons ci ratio: 1.650874e-03	ci left: 7.061188e-01	ci right 7.072858e-01	k: 1653684	n:2340000
KS ci ratio: 1.021052e-01	ci left: 5.973403e-04	ci right 6.620256e-04	k: 1472	n:2340000
ASAH2   2340000 perm   2950 sec   (793 perm/sec)   p_kst 6.290598e-04   p_cons 7.067026e-01   p_joint 1.682479e-03

Joint ci ratio: 6.231134e-02	ci left: 1.628879e-03	ci right 1.734057e-03	k: 3950	n:2350000
Cons ci ratio: 1.647339e-03	ci left: 7.061247e-01	ci right 7.072893e-01	k: 1660762	n:2350000
KS ci ratio: 1.019669e-01	ci left: 5.964571e-04	ci right 6.609540e-04	k: 1476	n:2350000
ASAH2   2350000 perm   2973 sec   (790 perm/sec)   p_kst 6.280851e-04   p_cons 7.067072e-01   p_joint 1.680851e-03

Joint ci ratio: 6.219341e-02	ci left: 1.628234e-03	ci right 1.733164e-03	k: 3965	n:2360000
Cons ci ratio: 1.643741e-03	ci left: 7.061522e-01	ci right 7.073143e-01	k: 1667891	n:2360000
KS ci ratio: 1.017948e-01	ci left: 5.959944e-04	ci right 6.603260e-04	k: 1481	n:2360000
ASAH2   2360000 perm   2997 sec   (787 perm/sec)   p_kst 6.275424e-04   p_cons 7.067335e-01   p_joint 1.680085e-03

Joint ci ratio: 6.112234e-02	ci left: 1.679527e-03	ci right 1.785832e-03	k: 4105	n:2370000
Cons ci ratio: 1.640310e-03	ci left: 7.061431e-01	ci right 7.073028e-01	k: 1674934	n:2370000
KS ci ratio: 1.014190e-01	ci left: 5.980031e-04	ci right 6.622990e-04	k: 1492	n:2370000
ASAH2   2370000 perm   3021 sec   (784 perm/sec)   p_kst 6.295359e-04   p_cons 7.067232e-01   p_joint 1.732068e-03

Joint ci ratio: 6.137765e-02	ci left: 1.658402e-03	ci right 1.763824e-03	k: 4071	n:2380000
Cons ci ratio: 1.636756e-03	ci left: 7.061707e-01	ci right 7.073279e-01	k: 1682064	n:2380000
KS ci ratio: 1.013512e-01	ci left: 5.963094e-04	ci right 6.603779e-04	k: 1494	n:2380000
ASAH2   2380000 perm   3045 sec   (782 perm/sec)   p_kst 6.277311e-04   p_cons 7.067496e-01   p_joint 1.710504e-03

Joint ci ratio: 6.124243e-02	ci left: 1.658879e-03	ci right 1.764091e-03	k: 4089	n:2390000
Cons ci ratio: 1.633405e-03	ci left: 7.061525e-01	ci right 7.073073e-01	k: 1689085	n:2390000
KS ci ratio: 1.010475e-01	ci left: 5.974848e-04	ci right 6.614758e-04	k: 1503	n:2390000
ASAH2   2390000 perm   3068 sec   (779 perm/sec)   p_kst 6.288703e-04   p_cons 7.067301e-01   p_joint 1.710879e-03

Joint ci ratio: 6.110065e-02	ci left: 1.659763e-03	ci right 1.764779e-03	k: 4108	n:2400000
Cons ci ratio: 1.629893e-03	ci left: 7.061807e-01	ci right 7.073330e-01	k: 1696217	n:2400000
KS ci ratio: 1.007464e-01	ci left: 5.986507e-04	ci right 6.625642e-04	k: 1512	n:2400000
ASAH2   2400000 perm   3092 sec   (776 perm/sec)   p_kst 6.300000e-04   p_cons 7.067571e-01   p_joint 1.711667e-03

Joint ci ratio: 6.097465e-02	ci left: 1.659822e-03	ci right 1.764617e-03	k: 4125	n:2410000
Cons ci ratio: 1.626338e-03	ci left: 7.062252e-01	ci right 7.073751e-01	k: 1703389	n:2410000
KS ci ratio: 1.006467e-01	ci left: 5.973801e-04	ci right 6.610912e-04	k: 1515	n:2410000
ASAH2   2410000 perm   3116 sec   (774 perm/sec)   p_kst 6.286307e-04   p_cons 7.068004e-01   p_joint 1.711618e-03

Joint ci ratio: 6.108619e-02	ci left: 1.646859e-03	ci right 1.751033e-03	k: 4110	n:2420000
Cons ci ratio: 1.622956e-03	ci left: 7.062310e-01	ci right 7.073785e-01	k: 1710468	n:2420000
KS ci ratio: 1.005143e-01	ci left: 5.965229e-04	ci right 6.600538e-04	k: 1519	n:2420000
ASAH2   2420000 perm   3140 sec   (771 perm/sec)   p_kst 6.276860e-04   p_cons 7.068050e-01   p_joint 1.698347e-03

Joint ci ratio: 6.095288e-02	ci left: 1.647377e-03	ci right 1.751347e-03	k: 4128	n:2430000
Cons ci ratio: 1.619546e-03	ci left: 7.062494e-01	ci right 7.073945e-01	k: 1717578	n:2430000
KS ci ratio: 1.003494e-01	ci left: 5.960740e-04	ci right 6.594469e-04	k: 1524	n:2430000
ASAH2   2430000 perm   3163 sec   (768 perm/sec)   p_kst 6.271605e-04   p_cons 7.068222e-01   p_joint 1.698765e-03

Joint ci ratio: 6.096789e-02	ci left: 1.639818e-03	ci right 1.743338e-03	k: 4126	n:2440000
Cons ci ratio: 1.616368e-03	ci left: 7.062136e-01	ci right 7.073564e-01	k: 1724556	n:2440000
KS ci ratio: 1.000872e-01	ci left: 5.968276e-04	ci right 6.601050e-04	k: 1532	n:2440000
ASAH2   2440000 perm   3187 sec   (766 perm/sec)   p_kst 6.278689e-04   p_cons 7.067852e-01   p_joint 1.690984e-03

Joint ci ratio: 6.090899e-02	ci left: 1.636340e-03	ci right 1.739537e-03	k: 4134	n:2450000
Cons ci ratio: 1.613075e-03	ci left: 7.062124e-01	ci right 7.073529e-01	k: 1731618	n:2450000
KS ci ratio: 1.000220e-01	ci left: 5.951874e-04	ci right 6.582475e-04	k: 1534	n:2450000
ASAH2   2450000 perm   3212 sec   (763 perm/sec)   p_kst 6.261224e-04   p_cons 7.067829e-01   p_joint 1.687347e-03

Joint ci ratio: 6.094612e-02	ci left: 1.627686e-03	ci right 1.730403e-03	k: 4129	n:2460000
Cons ci ratio: 1.609832e-03	ci left: 7.062034e-01	ci right 7.073416e-01	k: 1738661	n:2460000
KS ci ratio: 9.973004e-02	ci left: 5.963351e-04	ci right 6.593216e-04	k: 1543	n:2460000
ASAH2   2460000 perm   3236 sec   (760 perm/sec)   p_kst 6.272358e-04   p_cons 7.067728e-01   p_joint 1.678455e-03

Outputting figure to mutsig2_images.part000000000012/ASAH2.5_2423_2460000_0.00062724_0.70677_0.0016785.png
                gene_name: ASAH2
               theta_stop: 0.100 
                    nperm: 2460000 
                     p_ks: 0.00063 
        ci_ks_bounds_left: 0.00060 
       ci_ks_bounds_right: 0.00066 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.0017 
     ci_joint_bounds_left: 0.0016 
    ci_joint_bounds_right: 0.0017 

Current progress: 36 percent done.
ASAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.001251e-01	ci left: 1.262063e-01	ci right 1.396083e-01	k: 1328	n:10000
Cons ci ratio: 1.016296e-01	ci left: 1.228802e-01	ci right 1.361365e-01	k: 1294	n:10000
KS ci ratio: 8.885890e-02	ci left: 1.556131e-01	ci right 1.701838e-01	k: 1628	n:10000
ASAP1   10000 perm   2 sec   (4421 perm/sec)   p_kst 1.628000e-01   p_cons 1.294000e-01   p_joint 1.328000e-01

Joint ci ratio: 7.139006e-02	ci left: 1.263036e-01	ci right 1.357040e-01	k: 2619	n:20000
Cons ci ratio: 7.437585e-02	ci left: 1.173959e-01	ci right 1.265143e-01	k: 2438	n:20000
KS ci ratio: 6.254725e-02	ci left: 1.589912e-01	ci right 1.693067e-01	k: 3282	n:20000
ASAP1   20000 perm   5 sec   (4109 perm/sec)   p_kst 1.641000e-01   p_cons 1.219000e-01   p_joint 1.309500e-01

Outputting figure to mutsig2_images.part000000000012/ASAP1.5_3506_20000_0.1641_0.1219_0.13095.png
                gene_name: ASAP1
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 38 percent done.
ASAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.432872e-02	ci left: 5.561176e-01	ci right 5.756439e-01	k: 5659	n:10000
Cons ci ratio: 3.589212e-02	ci left: 5.340764e-01	ci right 5.536980e-01	k: 5439	n:10000
KS ci ratio: 4.773191e-02	ci left: 3.930670e-01	ci right 4.123897e-01	k: 4027	n:10000
ASAP2   10000 perm   2 sec   (4743 perm/sec)   p_kst 4.027000e-01   p_cons 5.439000e-01   p_joint 5.659000e-01

Outputting figure to mutsig2_images.part000000000012/ASAP2.5_3133_10000_0.4027_0.5439_0.5659.png
                gene_name: ASAP2
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 40 percent done.
ASNS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.655618e-02	ci left: 6.761958e-01	ci right 6.944962e-01	k: 6854	n:10000
Cons ci ratio: 1.808679e-02	ci left: 8.169002e-01	ci right 8.319103e-01	k: 8245	n:10000
KS ci ratio: 3.749872e-02	ci left: 5.122545e-01	ci right 5.319326e-01	k: 5221	n:10000
ASNS   10000 perm   2 sec   (5193 perm/sec)   p_kst 5.221000e-01   p_cons 8.245000e-01   p_joint 6.854000e-01

Outputting figure to mutsig2_images.part000000000012/ASNS.5_1730_10000_0.5221_0.8245_0.6854.png
                gene_name: ASNS
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.69 

Current progress: 43 percent done.
ASXL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.888568e-01	ci left: 3.738868e-02	ci right 4.528136e-02	k: 412	n:10000
Cons ci ratio: 2.880045e-02	ci left: 6.399554e-01	ci right 6.587575e-01	k: 6494	n:10000
KS ci ratio: 3.054647e-01	ci left: 1.372489e-02	ci right 1.876262e-02	k: 161	n:10000
ASXL2   10000 perm   2 sec   (4368 perm/sec)   p_kst 1.610000e-02   p_cons 6.494000e-01   p_joint 4.120000e-02

Joint ci ratio: 1.262282e-01	ci left: 4.308943e-02	ci right 4.894347e-02	k: 919	n:20000
Cons ci ratio: 2.050243e-02	ci left: 6.396781e-01	ci right 6.529794e-01	k: 12927	n:20000
KS ci ratio: 2.130137e-01	ci left: 1.487481e-02	ci right 1.846769e-02	k: 332	n:20000
ASXL2   20000 perm   5 sec   (4001 perm/sec)   p_kst 1.660000e-02   p_cons 6.463500e-01   p_joint 4.595000e-02

Joint ci ratio: 1.062525e-01	ci left: 4.108949e-02	ci right 4.573279e-02	k: 1301	n:30000
Cons ci ratio: 1.680575e-02	ci left: 6.391199e-01	ci right 6.499854e-01	k: 19337	n:30000
KS ci ratio: 1.724403e-01	ci left: 1.547168e-02	ci right 1.842294e-02	k: 507	n:30000
ASXL2   30000 perm   8 sec   (3900 perm/sec)   p_kst 1.690000e-02   p_cons 6.445667e-01   p_joint 4.336667e-02

Joint ci ratio: 9.623840e-02	ci left: 3.790521e-02	ci right 4.176196e-02	k: 1592	n:40000
Cons ci ratio: 1.455882e-02	ci left: 6.397111e-01	ci right 6.491179e-01	k: 25777	n:40000
KS ci ratio: 1.503958e-01	ci left: 1.544281e-02	ci right 1.797805e-02	k: 667	n:40000
ASXL2   40000 perm   10 sec   (3822 perm/sec)   p_kst 1.667500e-02   p_cons 6.444250e-01   p_joint 3.980000e-02

Joint ci ratio: 8.302588e-02	ci left: 4.090524e-02	ci right 4.446810e-02	k: 2133	n:50000
Cons ci ratio: 1.303109e-02	ci left: 6.398851e-01	ci right 6.482982e-01	k: 32205	n:50000
KS ci ratio: 1.336260e-01	ci left: 1.578830e-02	ci right 1.806828e-02	k: 845	n:50000
ASXL2   50000 perm   13 sec   (3751 perm/sec)   p_kst 1.690000e-02   p_cons 6.441000e-01   p_joint 4.266000e-02

Joint ci ratio: 7.332569e-02	ci left: 4.379706e-02	ci right 4.714708e-02	k: 2727	n:60000
Cons ci ratio: 1.190828e-02	ci left: 6.397693e-01	ci right 6.474501e-01	k: 38617	n:60000
KS ci ratio: 1.209693e-01	ci left: 1.615857e-02	ci right 1.825517e-02	k: 1031	n:60000
ASXL2   60000 perm   16 sec   (3683 perm/sec)   p_kst 1.718333e-02   p_cons 6.436167e-01   p_joint 4.545000e-02

Joint ci ratio: 7.351875e-02	ci left: 3.759188e-02	ci right 4.047506e-02	k: 2731	n:70000
Cons ci ratio: 1.100510e-02	ci left: 6.408837e-01	ci right 6.479900e-01	k: 45111	n:70000
KS ci ratio: 1.120907e-01	ci left: 1.620808e-02	ci right 1.814653e-02	k: 1201	n:70000
ASXL2   70000 perm   19 sec   (3619 perm/sec)   p_kst 1.715714e-02   p_cons 6.444429e-01   p_joint 3.901429e-02

Joint ci ratio: 7.165312e-02	ci left: 3.476883e-02	ci right 3.736495e-02	k: 2884	n:80000
Cons ci ratio: 1.028015e-02	ci left: 6.417478e-01	ci right 6.483917e-01	k: 51606	n:80000
KS ci ratio: 1.046467e-01	ci left: 1.633470e-02	ci right 1.815055e-02	k: 1378	n:80000
ASXL2   80000 perm   22 sec   (3557 perm/sec)   p_kst 1.722500e-02   p_cons 6.450750e-01   p_joint 3.605000e-02

Joint ci ratio: 7.090547e-02	ci left: 3.167863e-02	ci right 3.401827e-02	k: 2955	n:90000
Cons ci ratio: 9.917656e-03	ci left: 6.313217e-01	ci right 6.376252e-01	k: 57103	n:90000
KS ci ratio: 9.890141e-02	ci left: 1.630640e-02	ci right 1.801381e-02	k: 1543	n:90000
ASXL2   90000 perm   26 sec   (3498 perm/sec)   p_kst 1.714444e-02   p_cons 6.344778e-01   p_joint 3.283333e-02

Outputting figure to mutsig2_images.part000000000012/ASXL2.5_4356_90000_0.017144_0.63448_0.032833.png
                gene_name: ASXL2
               theta_stop: 0.099 
                    nperm: 90000 
                     p_ks: 0.017 
        ci_ks_bounds_left: 0.016 
       ci_ks_bounds_right: 0.018 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.033 
     ci_joint_bounds_left: 0.032 
    ci_joint_bounds_right: 0.034 

Current progress: 45 percent done.
ASB9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.621882e-02	ci left: 5.295704e-01	ci right 5.492067e-01	k: 5394	n:10000
Cons ci ratio: 5.992136e-02	ci left: 2.906312e-01	ci right 3.086857e-01	k: 2996	n:10000
KS ci ratio: 4.400121e-02	ci left: 4.326334e-01	ci right 4.522002e-01	k: 4424	n:10000
ASB9   10000 perm   2 sec   (5731 perm/sec)   p_kst 4.424000e-01   p_cons 2.996000e-01   p_joint 5.394000e-01

Outputting figure to mutsig2_images.part000000000012/ASB9.4_942_10000_0.4424_0.2996_0.5394.png
                gene_name: ASB9
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 47 percent done.
ASH2L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.967064e-02	ci left: 3.741540e-01	ci right 3.933138e-01	k: 3837	n:10000
Cons ci ratio: 8.012969e-02	ci left: 1.853052e-01	ci right 2.008740e-01	k: 1930	n:10000
KS ci ratio: 2.902211e-02	ci left: 6.364352e-01	ci right 6.552797e-01	k: 6459	n:10000
ASH2L   10000 perm   2 sec   (5621 perm/sec)   p_kst 6.459000e-01   p_cons 1.930000e-01   p_joint 3.837000e-01

Outputting figure to mutsig2_images.part000000000012/ASH2L.4_1951_10000_0.6459_0.193_0.3837.png
                gene_name: ASH2L
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 49 percent done.
ASL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.981388e-01	ci left: 7.692674e-03	ci right 1.160097e-02	k: 95	n:10000
Cons ci ratio: 1.202867e-01	ci left: 9.019709e-02	ci right 1.018395e-01	k: 959	n:10000
KS ci ratio: 3.415481e-01	ci left: 1.078106e-02	ci right 1.530921e-02	k: 129	n:10000
ASL   10000 perm   2 sec   (5081 perm/sec)   p_kst 1.290000e-02   p_cons 9.590000e-02   p_joint 9.500000e-03

Joint ci ratio: 2.194697e-01	ci left: 1.397554e-02	ci right 1.746732e-02	k: 313	n:20000
Cons ci ratio: 8.486178e-02	ci left: 9.229449e-02	ci right 1.005233e-01	k: 1927	n:20000
KS ci ratio: 2.391972e-01	ci left: 1.166433e-02	ci right 1.487948e-02	k: 264	n:20000
ASL   20000 perm   4 sec   (4663 perm/sec)   p_kst 1.320000e-02   p_cons 9.635000e-02   p_joint 1.565000e-02

Joint ci ratio: 2.123298e-01	ci left: 1.004002e-02	ci right 1.245603e-02	k: 336	n:30000
Cons ci ratio: 6.881679e-02	ci left: 9.423135e-02	ci right 1.009801e-01	k: 2927	n:30000
KS ci ratio: 1.897008e-01	ci left: 1.270105e-02	ci right 1.539427e-02	k: 420	n:30000
ASL   30000 perm   7 sec   (4509 perm/sec)   p_kst 1.400000e-02   p_cons 9.756667e-02   p_joint 1.120000e-02

Joint ci ratio: 1.952618e-01	ci left: 9.000550e-03	ci right 1.097157e-02	k: 398	n:40000
Cons ci ratio: 5.993814e-02	ci left: 9.369720e-02	ci right 9.951151e-02	k: 3863	n:40000
KS ci ratio: 1.666096e-01	ci left: 1.251184e-02	ci right 1.480957e-02	k: 545	n:40000
ASL   40000 perm   9 sec   (4376 perm/sec)   p_kst 1.362500e-02   p_cons 9.657500e-02   p_joint 9.950000e-03

Joint ci ratio: 1.158120e-01	ci left: 2.110127e-02	ci right 2.371459e-02	k: 1119	n:50000
Cons ci ratio: 5.367810e-02	ci left: 9.378700e-02	ci right 9.897996e-02	k: 4818	n:50000
KS ci ratio: 1.476556e-01	ci left: 1.287283e-02	ci right 1.494417e-02	k: 694	n:50000
ASL   50000 perm   12 sec   (4283 perm/sec)   p_kst 1.388000e-02   p_cons 9.636000e-02   p_joint 2.238000e-02

Joint ci ratio: 1.245802e-01	ci left: 1.522113e-02	ci right 1.725939e-02	k: 973	n:60000
Cons ci ratio: 4.887414e-02	ci left: 9.446176e-02	ci right 9.921065e-02	k: 5809	n:60000
KS ci ratio: 1.344641e-01	ci left: 1.302679e-02	ci right 1.492065e-02	k: 837	n:60000
ASL   60000 perm   14 sec   (4182 perm/sec)   p_kst 1.395000e-02   p_cons 9.681667e-02   p_joint 1.621667e-02

Joint ci ratio: 1.219022e-01	ci left: 1.366905e-02	ci right 1.545724e-02	k: 1018	n:70000
Cons ci ratio: 4.532030e-02	ci left: 9.436464e-02	ci right 9.875458e-02	k: 6758	n:70000
KS ci ratio: 1.242750e-01	ci left: 1.314268e-02	ci right 1.489794e-02	k: 980	n:70000
ASL   70000 perm   17 sec   (4094 perm/sec)   p_kst 1.400000e-02   p_cons 9.654286e-02   p_joint 1.454286e-02

Joint ci ratio: 1.274456e-01	ci left: 1.094214e-02	ci right 1.244358e-02	k: 934	n:80000
Cons ci ratio: 4.247419e-02	ci left: 9.417752e-02	ci right 9.827681e-02	k: 7697	n:80000
KS ci ratio: 1.177568e-01	ci left: 1.285737e-02	ci right 1.447818e-02	k: 1092	n:80000
ASL   80000 perm   20 sec   (4007 perm/sec)   p_kst 1.365000e-02   p_cons 9.621250e-02   p_joint 1.167500e-02

Joint ci ratio: 1.228977e-01	ci left: 1.049039e-02	ci right 1.187472e-02	k: 1005	n:90000
Cons ci ratio: 4.003804e-02	ci left: 9.432511e-02	ci right 9.818985e-02	k: 8662	n:90000
KS ci ratio: 1.108226e-01	ci left: 1.295071e-02	ci right 1.448087e-02	k: 1233	n:90000
ASL   90000 perm   23 sec   (3937 perm/sec)   p_kst 1.370000e-02   p_cons 9.624444e-02   p_joint 1.116667e-02

Joint ci ratio: 1.140280e-01	ci left: 1.101356e-02	ci right 1.235499e-02	k: 1167	n:100000
Cons ci ratio: 3.794323e-02	ci left: 9.460721e-02	ci right 9.827623e-02	k: 9643	n:100000
KS ci ratio: 1.054131e-01	ci left: 1.292049e-02	ci right 1.436793e-02	k: 1363	n:100000
ASL   100000 perm   26 sec   (3877 perm/sec)   p_kst 1.363000e-02   p_cons 9.643000e-02   p_joint 1.167000e-02

Joint ci ratio: 1.125887e-01	ci left: 1.028594e-02	ci right 1.152187e-02	k: 1198	n:110000
Cons ci ratio: 3.613111e-02	ci left: 9.491447e-02	ci right 9.841592e-02	k: 10632	n:110000
KS ci ratio: 1.007597e-01	ci left: 1.288838e-02	ci right 1.426471e-02	k: 1492	n:110000
ASL   110000 perm   29 sec   (3819 perm/sec)   p_kst 1.356364e-02   p_cons 9.665455e-02   p_joint 1.089091e-02

Joint ci ratio: 9.931276e-02	ci left: 1.217974e-02	ci right 1.346063e-02	k: 1537	n:120000
Cons ci ratio: 3.452153e-02	ci left: 9.534762e-02	ci right 9.870522e-02	k: 11642	n:120000
KS ci ratio: 9.622265e-02	ci left: 1.298483e-02	ci right 1.430550e-02	k: 1636	n:120000
ASL   120000 perm   32 sec   (3757 perm/sec)   p_kst 1.363333e-02   p_cons 9.701667e-02   p_joint 1.280833e-02

Outputting figure to mutsig2_images.part000000000012/ASL.4_1459_120000_0.013633_0.097017_0.012808.png
                gene_name: ASL
               theta_stop: 0.099 
                    nperm: 120000 
                     p_ks: 0.014 
        ci_ks_bounds_left: 0.013 
       ci_ks_bounds_right: 0.014 
                   p_cons: 0.097 
      ci_cons_bounds_left: 0.095 
     ci_cons_bounds_right: 0.099 
                  p_joint: 0.013 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.013 

Current progress: 51 percent done.
ASNA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.133959e-02	ci left: 7.630411e-01	ci right 7.796005e-01	k: 7714	n:10000
KS ci ratio: 1.516905e-02	ci left: 8.630465e-01	ci right 8.763374e-01	k: 8698	n:10000
ASNA1   10000 perm   2 sec   (5777 perm/sec)   p_kst 8.698000e-01   p_cons 7.714000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000012/ASNA1.4_1075_10000_0.8698_0.7714_1.png
                gene_name: ASNA1
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 53 percent done.
ASNSD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.598625e-02	ci left: 5.327746e-01	ci right 5.524006e-01	k: 5426	n:10000
Cons ci ratio: 9.644065e-03	ci left: 9.382754e-01	ci right 9.474645e-01	k: 9430	n:10000
KS ci ratio: 6.214964e-02	ci left: 2.756709e-01	ci right 2.934548e-01	k: 2845	n:10000
ASNSD1   10000 perm   2 sec   (5039 perm/sec)   p_kst 2.845000e-01   p_cons 9.430000e-01   p_joint 5.426000e-01

Outputting figure to mutsig2_images.part000000000012/ASNSD1.4_1944_10000_0.2845_0.943_0.5426.png
                gene_name: ASNSD1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 55 percent done.
ASPH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.257621e-02	ci left: 1.762516e-01	ci right 1.915330e-01	k: 1838	n:10000
Cons ci ratio: 2.859839e-02	ci left: 6.431744e-01	ci right 6.619367e-01	k: 6526	n:10000
KS ci ratio: 1.041386e-01	ci left: 1.176005e-01	ci right 1.306194e-01	k: 1240	n:10000
ASPH   10000 perm   2 sec   (4467 perm/sec)   p_kst 1.240000e-01   p_cons 6.526000e-01   p_joint 1.838000e-01

Joint ci ratio: 4.439332e-02	ci left: 2.742315e-01	ci right 2.867324e-01	k: 5609	n:20000
Cons ci ratio: 2.053383e-02	ci left: 6.389752e-01	ci right 6.522824e-01	k: 12913	n:20000
KS ci ratio: 7.231397e-02	ci left: 1.234484e-01	ci right 1.327600e-01	k: 2561	n:20000
ASPH   20000 perm   5 sec   (4159 perm/sec)   p_kst 1.280500e-01   p_cons 6.456500e-01   p_joint 2.804500e-01

Outputting figure to mutsig2_images.part000000000012/ASPH.4_3113_20000_0.12805_0.64565_0.28045.png
                gene_name: ASPH
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 57 percent done.
ATAD2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.906018e-02	ci left: 6.358318e-01	ci right 6.546835e-01	k: 6453	n:10000
Cons ci ratio: 5.207474e-02	ci left: 3.521745e-01	ci right 3.711061e-01	k: 3616	n:10000
KS ci ratio: 3.914713e-02	ci left: 4.907512e-01	ci right 5.104484e-01	k: 5006	n:10000
ATAD2B   10000 perm   2 sec   (4515 perm/sec)   p_kst 5.006000e-01   p_cons 3.616000e-01   p_joint 6.453000e-01

Outputting figure to mutsig2_images.part000000000012/ATAD2B.4_4489_10000_0.5006_0.3616_0.6453.png
                gene_name: ATAD2B
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.65 

Current progress: 60 percent done.
ASB10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.036337e-02	ci left: 7.793491e-01	ci right 7.954831e-01	k: 7875	n:10000
KS ci ratio: 1.044305e-02	ci left: 9.287493e-01	ci right 9.385962e-01	k: 9338	n:10000
ASB10   10000 perm   2 sec   (5821 perm/sec)   p_kst 9.338000e-01   p_cons 7.875000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000012/ASB10.3_1699_10000_0.9338_0.7875_1.png
                gene_name: ASB10
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
ASB11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.598207e-02	ci left: 3.196927e-01	ci right 3.382070e-01	k: 3289	n:10000
Cons ci ratio: 7.724115e-02	ci left: 1.968288e-01	ci right 2.127436e-01	k: 2047	n:10000
KS ci ratio: 4.769225e-02	ci left: 3.934654e-01	ci right 4.127911e-01	k: 4031	n:10000
ASB11   10000 perm   2 sec   (6323 perm/sec)   p_kst 4.031000e-01   p_cons 2.047000e-01   p_joint 3.289000e-01

Outputting figure to mutsig2_images.part000000000012/ASB11.3_1122_10000_0.4031_0.2047_0.3289.png
                gene_name: ASB11
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 64 percent done.
ASB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.055197e-01	ci left: 3.148396e-02	ci right 3.879009e-02	k: 350	n:10000
Cons ci ratio: 6.102425e-02	ci left: 2.831000e-01	ci right 3.010213e-01	k: 2920	n:10000
KS ci ratio: 2.371212e-01	ci left: 2.344048e-02	ci right 2.983930e-02	k: 265	n:10000
ASB2   10000 perm   2 sec   (5556 perm/sec)   p_kst 2.650000e-02   p_cons 2.920000e-01   p_joint 3.500000e-02

Joint ci ratio: 1.376830e-01	ci left: 3.626248e-02	ci right 4.167261e-02	k: 778	n:20000
Cons ci ratio: 4.290176e-02	ci left: 2.881384e-01	ci right 3.008214e-01	k: 5889	n:20000
KS ci ratio: 1.716948e-01	ci left: 2.321577e-02	ci right 2.762368e-02	k: 507	n:20000
ASB2   20000 perm   4 sec   (5011 perm/sec)   p_kst 2.535000e-02   p_cons 2.944500e-01   p_joint 3.890000e-02

Joint ci ratio: 1.165546e-01	ci left: 3.421187e-02	ci right 3.847853e-02	k: 1089	n:30000
Cons ci ratio: 3.514474e-02	ci left: 2.879528e-01	ci right 2.982873e-01	k: 8793	n:30000
KS ci ratio: 1.409503e-01	ci left: 2.335931e-02	ci right 2.693346e-02	k: 753	n:30000
ASB2   30000 perm   6 sec   (4802 perm/sec)   p_kst 2.510000e-02   p_cons 2.931000e-01   p_joint 3.630000e-02

Joint ci ratio: 1.022363e-01	ci left: 3.363478e-02	ci right 3.728306e-02	k: 1417	n:40000
Cons ci ratio: 3.034532e-02	ci left: 2.898863e-01	ci right 2.988436e-01	k: 11774	n:40000
KS ci ratio: 1.205584e-01	ci left: 2.419556e-02	ci right 2.732381e-02	k: 1029	n:40000
ASB2   40000 perm   9 sec   (4660 perm/sec)   p_kst 2.572500e-02   p_cons 2.943500e-01   p_joint 3.542500e-02

Joint ci ratio: 9.055963e-02	ci left: 3.448192e-02	ci right 3.777222e-02	k: 1805	n:50000
Cons ci ratio: 2.720159e-02	ci left: 2.894509e-01	ci right 2.974531e-01	k: 14672	n:50000
KS ci ratio: 1.079386e-01	ci left: 2.431112e-02	ci right 2.710432e-02	k: 1284	n:50000
ASB2   50000 perm   11 sec   (4540 perm/sec)   p_kst 2.568000e-02   p_cons 2.934400e-01   p_joint 3.610000e-02

Joint ci ratio: 7.647778e-02	ci left: 4.034339e-02	ci right 4.356777e-02	k: 2516	n:60000
Cons ci ratio: 2.413950e-02	ci left: 3.016162e-01	ci right 3.090027e-01	k: 18318	n:60000
KS ci ratio: 9.916299e-02	ci left: 2.412320e-02	ci right 2.665632e-02	k: 1522	n:60000
ASB2   60000 perm   14 sec   (4438 perm/sec)   p_kst 2.536667e-02   p_cons 3.053000e-01   p_joint 4.193333e-02

Outputting figure to mutsig2_images.part000000000012/ASB2.3_1796_60000_0.025367_0.3053_0.041933.png
                gene_name: ASB2
               theta_stop: 0.099 
                    nperm: 60000 
                     p_ks: 0.025 
        ci_ks_bounds_left: 0.024 
       ci_ks_bounds_right: 0.027 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.042 
     ci_joint_bounds_left: 0.040 
    ci_joint_bounds_right: 0.044 

Current progress: 66 percent done.
ASB7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.584152e-02	ci left: 5.347774e-01	ci right 5.543966e-01	k: 5446	n:10000
Cons ci ratio: 3.242483e-02	ci left: 5.839977e-01	ci right 6.033477e-01	k: 5937	n:10000
KS ci ratio: 3.985010e-02	ci left: 4.818551e-01	ci right 5.015497e-01	k: 4917	n:10000
ASB7   10000 perm   2 sec   (6111 perm/sec)   p_kst 4.917000e-01   p_cons 5.937000e-01   p_joint 5.446000e-01

Outputting figure to mutsig2_images.part000000000012/ASB7.3_977_10000_0.4917_0.5937_0.5446.png
                gene_name: ASB7
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 68 percent done.
ASMTL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.898308e-02	ci left: 4.928507e-01	ci right 5.125477e-01	k: 5027	n:10000
KS ci ratio: 2.018079e-02	ci left: 7.823898e-01	ci right 7.984406e-01	k: 7905	n:10000
ASMTL   10000 perm   2 sec   (5779 perm/sec)   p_kst 7.905000e-01   p_cons 5.027000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000012/ASMTL.3_1918_10000_0.7905_0.5027_1.png
                gene_name: ASMTL
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
ASTE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.086321e-02	ci left: 2.259279e-01	ci right 2.426271e-01	k: 2342	n:10000
Cons ci ratio: 7.457047e-02	ci left: 2.083625e-01	ci right 2.246029e-01	k: 2164	n:10000
KS ci ratio: 5.016777e-02	ci left: 3.694779e-01	ci right 3.885927e-01	k: 3790	n:10000
ASTE1   10000 perm   2 sec   (5629 perm/sec)   p_kst 3.790000e-01   p_cons 2.164000e-01   p_joint 2.342000e-01

Outputting figure to mutsig2_images.part000000000012/ASTE1.3_2056_10000_0.379_0.2164_0.2342.png
                gene_name: ASTE1
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 72 percent done.
ATF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.240467e-02	ci left: 5.842987e-01	ci right 6.036465e-01	k: 5940	n:10000
KS ci ratio: 3.503264e-02	ci left: 5.460965e-01	ci right 5.656709e-01	k: 5559	n:10000
ATF2   10000 perm   2 sec   (5653 perm/sec)   p_kst 5.559000e-01   p_cons 5.940000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000012/ATF2.3_1566_10000_0.5559_0.594_1.png
                gene_name: ATF2
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 74 percent done.
ATG16L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.566232e-02	ci left: 4.144867e-01	ci right 4.339575e-01	k: 4242	n:10000
KS ci ratio: 3.799000e-02	ci left: 5.057516e-01	ci right 5.254393e-01	k: 5156	n:10000
ATG16L2   10000 perm   2 sec   (5699 perm/sec)   p_kst 5.156000e-01   p_cons 4.242000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000012/ATG16L2.3_1932_10000_0.5156_0.4242_1.png
                gene_name: ATG16L2
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
ASAP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.011330e+00	ci left: 7.655977e-04	ci right 2.347848e-03	k: 14	n:10000
Cons ci ratio: 3.978639e-02	ci left: 4.826547e-01	ci right 5.023497e-01	k: 4925	n:10000
KS ci ratio: 1.959510e+00	ci left: 6.187149e-05	ci right 8.764745e-04	k: 3	n:10000
ASAP3   10000 perm   2 sec   (5405 perm/sec)   p_kst 3.000000e-04   p_cons 4.925000e-01   p_joint 1.400000e-03

Joint ci ratio: 1.086832e+00	ci left: 3.100660e-04	ci right 1.047844e-03	k: 12	n:20000
Cons ci ratio: 2.811006e-02	ci left: 4.859976e-01	ci right 4.999044e-01	k: 9859	n:20000
KS ci ratio: 1.239272e+00	ci left: 2.057886e-04	ci right 8.540675e-04	k: 9	n:20000
ASAP3   20000 perm   4 sec   (4875 perm/sec)   p_kst 4.500000e-04   p_cons 4.929500e-01   p_joint 6.000000e-04

Joint ci ratio: 5.905189e-01	ci left: 1.037499e-03	ci right 1.930210e-03	k: 43	n:30000
Cons ci ratio: 2.295618e-02	ci left: 4.871936e-01	ci right 4.985411e-01	k: 14786	n:30000
KS ci ratio: 8.990099e-01	ci left: 3.556356e-04	ci right 9.480936e-04	k: 18	n:30000
ASAP3   30000 perm   6 sec   (4670 perm/sec)   p_kst 6.000000e-04   p_cons 4.928667e-01   p_joint 1.433333e-03

Joint ci ratio: 6.623027e-01	ci left: 5.887193e-04	ci right 1.187589e-03	k: 34	n:40000
Cons ci ratio: 1.914112e-02	ci left: 5.069133e-01	ci right 5.167350e-01	k: 20473	n:40000
KS ci ratio: 7.685158e-01	ci left: 4.045066e-04	ci right 9.224860e-04	k: 25	n:40000
ASAP3   40000 perm   9 sec   (4528 perm/sec)   p_kst 6.250000e-04   p_cons 5.118250e-01   p_joint 8.500000e-04

Joint ci ratio: 6.274512e-01	ci left: 5.378756e-04	ci right 1.043012e-03	k: 38	n:50000
Cons ci ratio: 1.712406e-02	ci left: 5.073280e-01	ci right 5.161106e-01	k: 25586	n:50000
KS ci ratio: 6.720391e-01	ci left: 4.543558e-04	ci right 9.267617e-04	k: 33	n:50000
ASAP3   50000 perm   11 sec   (4409 perm/sec)   p_kst 6.600000e-04   p_cons 5.117200e-01   p_joint 7.600000e-04

Joint ci ratio: 6.357013e-01	ci left: 4.342262e-04	ci right 8.498946e-04	k: 37	n:60000
Cons ci ratio: 1.559214e-02	ci left: 5.089917e-01	ci right 5.170070e-01	k: 30780	n:60000
KS ci ratio: 6.357013e-01	ci left: 4.342262e-04	ci right 8.498946e-04	k: 37	n:60000
ASAP3   60000 perm   14 sec   (4313 perm/sec)   p_kst 6.166667e-04   p_cons 5.130000e-01   p_joint 6.166667e-04

Joint ci ratio: 6.046833e-01	ci left: 4.203504e-04	ci right 7.945046e-04	k: 41	n:70000
Cons ci ratio: 1.443474e-02	ci left: 5.093182e-01	ci right 5.167378e-01	k: 35912	n:70000
KS ci ratio: 6.046833e-01	ci left: 4.203504e-04	ci right 7.945046e-04	k: 41	n:70000
ASAP3   70000 perm   17 sec   (4219 perm/sec)   p_kst 5.857143e-04   p_cons 5.130286e-01   p_joint 5.857143e-04

Joint ci ratio: 5.541950e-01	ci left: 4.531642e-04	ci right 8.096776e-04	k: 49	n:80000
Cons ci ratio: 1.350023e-02	ci left: 5.096423e-01	ci right 5.165818e-01	k: 41049	n:80000
KS ci ratio: 5.541950e-01	ci left: 4.531642e-04	ci right 8.096776e-04	k: 49	n:80000
ASAP3   80000 perm   19 sec   (4130 perm/sec)   p_kst 6.125000e-04   p_cons 5.131125e-01   p_joint 6.125000e-04

Joint ci ratio: 5.236661e-01	ci left: 4.604047e-04	ci right 7.953718e-04	k: 55	n:90000
Cons ci ratio: 1.272226e-02	ci left: 5.100731e-01	ci right 5.166150e-01	k: 46201	n:90000
KS ci ratio: 5.236661e-01	ci left: 4.604047e-04	ci right 7.953718e-04	k: 55	n:90000
ASAP3   90000 perm   22 sec   (4049 perm/sec)   p_kst 6.111111e-04   p_cons 5.133444e-01   p_joint 6.111111e-04

Joint ci ratio: 5.842247e-01	ci left: 3.197223e-04	ci right 5.906350e-04	k: 44	n:100000
Cons ci ratio: 1.205431e-02	ci left: 5.108669e-01	ci right 5.170723e-01	k: 51397	n:100000
KS ci ratio: 5.101874e-01	ci left: 4.404469e-04	ci right 7.497208e-04	k: 58	n:100000
ASAP3   100000 perm   25 sec   (3974 perm/sec)   p_kst 5.800000e-04   p_cons 5.139700e-01   p_joint 4.400000e-04

Joint ci ratio: 5.598727e-01	ci left: 3.217571e-04	ci right 5.785137e-04	k: 48	n:110000
Cons ci ratio: 1.149894e-02	ci left: 5.107688e-01	ci right 5.166851e-01	k: 56510	n:110000
KS ci ratio: 4.752207e-01	ci left: 4.720673e-04	ci right 7.734603e-04	k: 67	n:110000
ASAP3   110000 perm   28 sec   (3901 perm/sec)   p_kst 6.090909e-04   p_cons 5.137273e-01   p_joint 4.363636e-04

Joint ci ratio: 5.434861e-01	ci left: 3.164563e-04	ci right 5.587591e-04	k: 51	n:120000
Cons ci ratio: 1.100266e-02	ci left: 5.112010e-01	ci right 5.168650e-01	k: 61684	n:120000
KS ci ratio: 4.618359e-01	ci left: 4.621246e-04	ci right 7.462493e-04	k: 71	n:120000
ASAP3   120000 perm   31 sec   (3827 perm/sec)   p_kst 5.916667e-04   p_cons 5.140333e-01   p_joint 4.250000e-04

Joint ci ratio: 5.191008e-01	ci left: 3.254143e-04	ci right 5.593537e-04	k: 56	n:130000
Cons ci ratio: 1.058525e-02	ci left: 5.106404e-01	ci right 5.160821e-01	k: 66737	n:130000
KS ci ratio: 4.555593e-01	ci left: 4.401815e-04	ci right 7.059993e-04	k: 73	n:130000
ASAP3   130000 perm   35 sec   (3761 perm/sec)   p_kst 5.615385e-04   p_cons 5.133615e-01   p_joint 4.307692e-04

Joint ci ratio: 4.977285e-01	ci left: 3.333028e-04	ci right 5.596585e-04	k: 61	n:140000
Cons ci ratio: 1.020074e-02	ci left: 5.107137e-01	ci right 5.159572e-01	k: 71867	n:140000
KS ci ratio: 4.381425e-01	ci left: 4.467750e-04	ci right 7.032195e-04	k: 79	n:140000
ASAP3   140000 perm   38 sec   (3697 perm/sec)   p_kst 5.642857e-04   p_cons 5.133357e-01   p_joint 4.357143e-04

Joint ci ratio: 4.787957e-01	ci left: 3.403118e-04	ci right 5.597544e-04	k: 66	n:150000
Cons ci ratio: 9.854113e-03	ci left: 5.108404e-01	ci right 5.159058e-01	k: 77006	n:150000
KS ci ratio: 4.225819e-01	ci left: 4.526575e-04	ci right 7.006451e-04	k: 85	n:150000
ASAP3   150000 perm   41 sec   (3638 perm/sec)   p_kst 5.666667e-04   p_cons 5.133733e-01   p_joint 4.400000e-04

Joint ci ratio: 4.651137e-01	ci left: 3.410681e-04	ci right 5.527231e-04	k: 70	n:160000
Cons ci ratio: 9.543923e-03	ci left: 5.107788e-01	ci right 5.156832e-01	k: 82117	n:160000
KS ci ratio: 4.108095e-01	ci left: 4.523399e-04	ci right 6.913634e-04	k: 90	n:160000
ASAP3   160000 perm   45 sec   (3577 perm/sec)   p_kst 5.625000e-04   p_cons 5.132313e-01   p_joint 4.375000e-04

Joint ci ratio: 4.555902e-01	ci left: 3.366049e-04	ci right 5.398910e-04	k: 73	n:170000
Cons ci ratio: 9.253011e-03	ci left: 5.111739e-01	ci right 5.159316e-01	k: 87304	n:170000
KS ci ratio: 4.020699e-01	ci left: 4.468552e-04	ci right 6.766181e-04	k: 94	n:170000
ASAP3   170000 perm   48 sec   (3519 perm/sec)   p_kst 5.529412e-04   p_cons 5.135529e-01   p_joint 4.294118e-04

Joint ci ratio: 4.466287e-01	ci left: 3.326771e-04	ci right 5.284460e-04	k: 76	n:180000
Cons ci ratio: 8.994768e-03	ci left: 5.111047e-01	ci right 5.157282e-01	k: 92415	n:180000
KS ci ratio: 3.918900e-01	ci left: 4.470346e-04	ci right 6.695652e-04	k: 99	n:180000
ASAP3   180000 perm   52 sec   (3464 perm/sec)   p_kst 5.500000e-04   p_cons 5.134167e-01   p_joint 4.222222e-04

Joint ci ratio: 4.276114e-01	ci left: 3.479569e-04	ci right 5.415032e-04	k: 83	n:190000
Cons ci ratio: 8.755529e-03	ci left: 5.111287e-01	ci right 5.156288e-01	k: 97542	n:190000
KS ci ratio: 3.788530e-01	ci left: 4.567804e-04	ci right 6.747182e-04	k: 106	n:190000
ASAP3   190000 perm   56 sec   (3411 perm/sec)   p_kst 5.578947e-04   p_cons 5.133789e-01   p_joint 4.368421e-04

Joint ci ratio: 4.131103e-01	ci left: 3.573863e-04	ci right 5.475827e-04	k: 89	n:200000
Cons ci ratio: 8.531428e-03	ci left: 5.113268e-01	ci right 5.157128e-01	k: 102704	n:200000
KS ci ratio: 3.670361e-01	ci left: 4.656619e-04	ci right 6.792470e-04	k: 113	n:200000
ASAP3   200000 perm   60 sec   (3360 perm/sec)   p_kst 5.650000e-04   p_cons 5.135200e-01   p_joint 4.450000e-04

Joint ci ratio: 4.042257e-01	ci left: 3.574573e-04	ci right 5.425029e-04	k: 93	n:210000
Cons ci ratio: 8.324015e-03	ci left: 5.114883e-01	ci right 5.157685e-01	k: 107862	n:210000
KS ci ratio: 3.607630e-01	ci left: 4.607934e-04	ci right 6.676842e-04	k: 117	n:210000
ASAP3   210000 perm   63 sec   (3309 perm/sec)   p_kst 5.571429e-04   p_cons 5.136286e-01   p_joint 4.428571e-04

Joint ci ratio: 3.861578e-01	ci left: 3.780554e-04	ci right 5.627950e-04	k: 102	n:220000
Cons ci ratio: 8.134803e-03	ci left: 5.114044e-01	ci right 5.155861e-01	k: 112969	n:220000
KS ci ratio: 3.463807e-01	ci left: 4.812683e-04	ci right 6.868074e-04	k: 127	n:220000
ASAP3   220000 perm   67 sec   (3261 perm/sec)   p_kst 5.772727e-04   p_cons 5.134955e-01   p_joint 4.636364e-04

Joint ci ratio: 3.736671e-01	ci left: 3.891476e-04	ci right 5.716522e-04	k: 109	n:230000
Cons ci ratio: 7.950664e-03	ci left: 5.117855e-01	ci right 5.158750e-01	k: 118181	n:230000
KS ci ratio: 3.360371e-01	ci left: 4.921471e-04	ci right 6.946966e-04	k: 135	n:230000
ASAP3   230000 perm   72 sec   (3215 perm/sec)   p_kst 5.869565e-04   p_cons 5.138304e-01   p_joint 4.739130e-04

Joint ci ratio: 3.638741e-01	ci left: 3.956169e-04	ci right 5.751394e-04	k: 115	n:240000
Cons ci ratio: 7.783869e-03	ci left: 5.117898e-01	ci right 5.157932e-01	k: 123310	n:240000
KS ci ratio: 3.288611e-01	ci left: 4.945547e-04	ci right 6.928299e-04	k: 141	n:240000
ASAP3   240000 perm   76 sec   (3170 perm/sec)   p_kst 5.875000e-04   p_cons 5.137917e-01   p_joint 4.791667e-04

Joint ci ratio: 3.623186e-01	ci left: 3.834269e-04	ci right 5.564981e-04	k: 116	n:250000
Cons ci ratio: 7.624279e-03	ci left: 5.119826e-01	ci right 5.159050e-01	k: 128486	n:250000
KS ci ratio: 3.243261e-01	ci left: 4.894606e-04	ci right 6.824243e-04	k: 145	n:250000
ASAP3   250000 perm   80 sec   (3126 perm/sec)   p_kst 5.800000e-04   p_cons 5.139440e-01   p_joint 4.640000e-04

Joint ci ratio: 3.210463e-01	ci left: 4.812388e-04	ci right 6.686477e-04	k: 148	n:260000
Cons ci ratio: 7.473831e-03	ci left: 5.121806e-01	ci right 5.160267e-01	k: 133667	n:260000
KS ci ratio: 3.210463e-01	ci left: 4.812388e-04	ci right 6.686477e-04	k: 148	n:260000
ASAP3   260000 perm   84 sec   (3083 perm/sec)   p_kst 5.692308e-04   p_cons 5.141038e-01   p_joint 5.692308e-04

Joint ci ratio: 3.117666e-01	ci left: 4.941027e-04	ci right 6.798533e-04	k: 157	n:270000
Cons ci ratio: 7.336572e-03	ci left: 5.120498e-01	ci right 5.158240e-01	k: 138763	n:270000
KS ci ratio: 3.117666e-01	ci left: 4.941027e-04	ci right 6.798533e-04	k: 157	n:270000
ASAP3   270000 perm   89 sec   (3042 perm/sec)   p_kst 5.814815e-04   p_cons 5.139370e-01   p_joint 5.814815e-04

Joint ci ratio: 3.069482e-01	ci left: 4.929272e-04	ci right 6.748119e-04	k: 162	n:280000
Cons ci ratio: 7.490915e-03	ci left: 4.925857e-01	ci right 4.962930e-01	k: 138443	n:280000
KS ci ratio: 3.069482e-01	ci left: 4.929272e-04	ci right 6.748119e-04	k: 162	n:280000
ASAP3   280000 perm   93 sec   (3003 perm/sec)   p_kst 5.785714e-04   p_cons 4.944393e-01   p_joint 5.785714e-04

Joint ci ratio: 3.032508e-01	ci left: 4.886669e-04	ci right 6.663886e-04	k: 166	n:290000
Cons ci ratio: 7.360903e-03	ci left: 4.925994e-01	ci right 4.962421e-01	k: 143382	n:290000
KS ci ratio: 3.032508e-01	ci left: 4.886669e-04	ci right 6.663886e-04	k: 166	n:290000
ASAP3   290000 perm   98 sec   (2963 perm/sec)   p_kst 5.724138e-04   p_cons 4.944207e-01   p_joint 5.724138e-04

Joint ci ratio: 3.005646e-01	ci left: 4.816203e-04	ci right 6.549313e-04	k: 169	n:300000
Cons ci ratio: 7.232611e-03	ci left: 4.929460e-01	ci right 4.965275e-01	k: 148421	n:300000
KS ci ratio: 3.005646e-01	ci left: 4.816203e-04	ci right 6.549313e-04	k: 169	n:300000
ASAP3   300000 perm   103 sec   (2924 perm/sec)   p_kst 5.633333e-04   p_cons 4.947367e-01   p_joint 5.633333e-04

Joint ci ratio: 2.945606e-01	ci left: 4.869797e-04	ci right 6.580654e-04	k: 176	n:310000
Cons ci ratio: 7.114237e-03	ci left: 4.930288e-01	ci right 4.965520e-01	k: 153385	n:310000
KS ci ratio: 2.945606e-01	ci left: 4.869797e-04	ci right 6.580654e-04	k: 176	n:310000
ASAP3   310000 perm   107 sec   (2884 perm/sec)   p_kst 5.677419e-04   p_cons 4.947903e-01   p_joint 5.677419e-04

Joint ci ratio: 2.889027e-01	ci left: 4.920363e-04	ci right 6.609717e-04	k: 183	n:320000
Cons ci ratio: 7.001491e-03	ci left: 4.931068e-01	ci right 4.965745e-01	k: 158349	n:320000
KS ci ratio: 2.889027e-01	ci left: 4.920363e-04	ci right 6.609717e-04	k: 183	n:320000
ASAP3   320000 perm   112 sec   (2846 perm/sec)   p_kst 5.718750e-04   p_cons 4.948406e-01   p_joint 5.718750e-04

Joint ci ratio: 2.835587e-01	ci left: 4.968159e-04	ci right 6.636727e-04	k: 190	n:330000
Cons ci ratio: 6.895488e-03	ci left: 4.930685e-01	ci right 4.964831e-01	k: 163276	n:330000
KS ci ratio: 2.835587e-01	ci left: 4.968159e-04	ci right 6.636727e-04	k: 190	n:330000
ASAP3   330000 perm   118 sec   (2808 perm/sec)   p_kst 5.757576e-04   p_cons 4.947758e-01   p_joint 5.757576e-04

Joint ci ratio: 2.813589e-01	ci left: 4.904020e-04	ci right 6.536002e-04	k: 193	n:340000
Cons ci ratio: 6.792399e-03	ci left: 4.931621e-01	ci right 4.965262e-01	k: 168247	n:340000
KS ci ratio: 2.813589e-01	ci left: 4.904020e-04	ci right 6.536002e-04	k: 193	n:340000
ASAP3   340000 perm   123 sec   (2772 perm/sec)   p_kst 5.676471e-04   p_cons 4.948441e-01   p_joint 5.676471e-04

Joint ci ratio: 2.778020e-01	ci left: 4.896747e-04	ci right 6.502106e-04	k: 198	n:350000
Cons ci ratio: 6.692307e-03	ci left: 4.933622e-01	ci right 4.966779e-01	k: 173257	n:350000
KS ci ratio: 2.778020e-01	ci left: 4.896747e-04	ci right 6.502106e-04	k: 198	n:350000
ASAP3   350000 perm   128 sec   (2736 perm/sec)   p_kst 5.657143e-04   p_cons 4.950200e-01   p_joint 5.657143e-04

Joint ci ratio: 2.737063e-01	ci left: 4.915871e-04	ci right 6.499652e-04	k: 204	n:360000
Cons ci ratio: 6.598162e-03	ci left: 4.934265e-01	ci right 4.966958e-01	k: 178222	n:360000
KS ci ratio: 2.737063e-01	ci left: 4.915871e-04	ci right 6.499652e-04	k: 204	n:360000
ASAP3   360000 perm   133 sec   (2703 perm/sec)   p_kst 5.666667e-04   p_cons 4.950611e-01   p_joint 5.666667e-04

Joint ci ratio: 2.660285e-01	ci left: 5.085402e-04	ci right 6.670188e-04	k: 216	n:370000
Cons ci ratio: 6.506334e-03	ci left: 4.936066e-01	ci right 4.968313e-01	k: 183231	n:370000
KS ci ratio: 2.660285e-01	ci left: 5.085402e-04	ci right 6.670188e-04	k: 216	n:370000
ASAP3   370000 perm   138 sec   (2672 perm/sec)   p_kst 5.837838e-04   p_cons 4.952189e-01   p_joint 5.837838e-04

Joint ci ratio: 2.624252e-01	ci left: 5.099014e-04	ci right 6.662985e-04	k: 222	n:380000
Cons ci ratio: 6.420397e-03	ci left: 4.936091e-01	ci right 4.967910e-01	k: 188176	n:380000
KS ci ratio: 2.624252e-01	ci left: 5.099014e-04	ci right 6.662985e-04	k: 222	n:380000
ASAP3   380000 perm   144 sec   (2642 perm/sec)   p_kst 5.842105e-04   p_cons 4.952000e-01   p_joint 5.842105e-04

Joint ci ratio: 2.595321e-01	ci left: 5.088088e-04	ci right 6.628714e-04	k: 227	n:390000
Cons ci ratio: 6.338721e-03	ci left: 4.935373e-01	ci right 4.966782e-01	k: 193092	n:390000
KS ci ratio: 2.595321e-01	ci left: 5.088088e-04	ci right 6.628714e-04	k: 227	n:390000
ASAP3   390000 perm   149 sec   (2611 perm/sec)   p_kst 5.820513e-04   p_cons 4.951077e-01   p_joint 5.820513e-04

Joint ci ratio: 2.572856e-01	ci left: 5.054408e-04	ci right 6.569460e-04	k: 231	n:400000
Cons ci ratio: 6.259865e-03	ci left: 4.934869e-01	ci right 4.965882e-01	k: 198015	n:400000
KS ci ratio: 2.572856e-01	ci left: 5.054408e-04	ci right 6.569460e-04	k: 231	n:400000
ASAP3   400000 perm   155 sec   (2582 perm/sec)   p_kst 5.775000e-04   p_cons 4.950375e-01   p_joint 5.775000e-04

Joint ci ratio: 2.534895e-01	ci left: 5.090935e-04	ci right 6.590864e-04	k: 238	n:410000
Cons ci ratio: 6.184483e-03	ci left: 4.933904e-01	ci right 4.964536e-01	k: 202918	n:410000
KS ci ratio: 2.534895e-01	ci left: 5.090935e-04	ci right 6.590864e-04	k: 238	n:410000
ASAP3   410000 perm   161 sec   (2553 perm/sec)   p_kst 5.804878e-04   p_cons 4.949220e-01   p_joint 5.804878e-04

Joint ci ratio: 2.785163e-01	ci left: 4.058448e-04	ci right 5.392995e-04	k: 197	n:420000
Cons ci ratio: 6.109607e-03	ci left: 4.934749e-01	ci right 4.965014e-01	k: 207895	n:420000
KS ci ratio: 2.488465e-01	ci left: 5.170524e-04	ci right 6.661681e-04	k: 247	n:420000
ASAP3   420000 perm   166 sec   (2525 perm/sec)   p_kst 5.880952e-04   p_cons 4.949881e-01   p_joint 4.690476e-04

Joint ci ratio: 3.200105e-01	ci left: 2.931153e-04	ci right 4.068185e-04	k: 149	n:430000
Cons ci ratio: 6.038257e-03	ci left: 4.934836e-01	ci right 4.964746e-01	k: 212841	n:430000
KS ci ratio: 2.468641e-01	ci left: 5.137524e-04	ci right 6.605549e-04	k: 251	n:430000
ASAP3   430000 perm   172 sec   (2497 perm/sec)   p_kst 5.837209e-04   p_cons 4.949791e-01   p_joint 3.465116e-04

Joint ci ratio: 2.743910e-01	ci left: 4.000884e-04	ci right 5.293653e-04	k: 203	n:440000
Cons ci ratio: 5.969485e-03	ci left: 4.934807e-01	ci right 4.964376e-01	k: 217782	n:440000
KS ci ratio: 2.449284e-01	ci left: 5.106069e-04	ci right 6.551924e-04	k: 255	n:440000
ASAP3   440000 perm   178 sec   (2469 perm/sec)   p_kst 5.795455e-04   p_cons 4.949591e-01   p_joint 4.613636e-04

Joint ci ratio: 2.723959e-01	ci left: 3.974071e-04	ci right 5.247243e-04	k: 206	n:450000
Cons ci ratio: 5.901358e-03	ci left: 4.936181e-01	ci right 4.965419e-01	k: 222786	n:450000
KS ci ratio: 2.430376e-01	ci left: 5.076054e-04	ci right 6.500640e-04	k: 259	n:450000
ASAP3   450000 perm   184 sec   (2441 perm/sec)   p_kst 5.755556e-04   p_cons 4.950800e-01   p_joint 4.577778e-04

Joint ci ratio: 2.698017e-01	ci left: 3.968725e-04	ci right 5.226026e-04	k: 210	n:460000
Cons ci ratio: 5.835079e-03	ci left: 4.937867e-01	ci right 4.966786e-01	k: 227807	n:460000
KS ci ratio: 2.407341e-01	ci left: 5.067813e-04	ci right 6.474593e-04	k: 264	n:460000
ASAP3   460000 perm   191 sec   (2414 perm/sec)   p_kst 5.739130e-04   p_cons 4.952326e-01   p_joint 4.565217e-04

Joint ci ratio: 2.672803e-01	ci left: 3.963661e-04	ci right 5.205656e-04	k: 214	n:470000
Cons ci ratio: 5.773243e-03	ci left: 4.937526e-01	ci right 4.966135e-01	k: 232736	n:470000
KS ci ratio: 2.384948e-01	ci left: 5.059983e-04	ci right 6.449594e-04	k: 269	n:470000
ASAP3   470000 perm   197 sec   (2389 perm/sec)   p_kst 5.723404e-04   p_cons 4.951830e-01   p_joint 4.553191e-04

Joint ci ratio: 2.654353e-01	ci left: 3.939411e-04	ci right 5.163870e-04	k: 217	n:480000
Cons ci ratio: 5.713547e-03	ci left: 4.937012e-01	ci right 4.965321e-01	k: 237656	n:480000
KS ci ratio: 2.367480e-01	ci left: 5.032938e-04	ci right 6.403514e-04	k: 273	n:480000
ASAP3   480000 perm   203 sec   (2363 perm/sec)   p_kst 5.687500e-04   p_cons 4.951167e-01   p_joint 4.520833e-04

Joint ci ratio: 2.636280e-01	ci left: 3.916179e-04	ci right 5.123761e-04	k: 220	n:490000
Cons ci ratio: 5.655273e-03	ci left: 4.936869e-01	ci right 4.964887e-01	k: 242593	n:490000
KS ci ratio: 2.346172e-01	ci left: 5.026241e-04	ci right 6.380886e-04	k: 278	n:490000
ASAP3   490000 perm   210 sec   (2338 perm/sec)   p_kst 5.673469e-04   p_cons 4.950878e-01   p_joint 4.489796e-04

Joint ci ratio: 2.606953e-01	ci left: 3.931285e-04	ci right 5.127842e-04	k: 225	n:500000
Cons ci ratio: 5.597939e-03	ci left: 4.937452e-01	ci right 4.965189e-01	k: 247566	n:500000
KS ci ratio: 2.325429e-01	ci left: 5.019864e-04	ci right 6.359110e-04	k: 283	n:500000
ASAP3   500000 perm   216 sec   (2314 perm/sec)   p_kst 5.660000e-04   p_cons 4.951320e-01   p_joint 4.500000e-04

Joint ci ratio: 3.005999e-01	ci left: 2.833015e-04	ci right 3.852610e-04	k: 169	n:510000
Cons ci ratio: 5.543380e-03	ci left: 4.937053e-01	ci right 4.964516e-01	k: 252490	n:510000
KS ci ratio: 2.301246e-01	ci left: 5.032265e-04	ci right 6.358874e-04	k: 289	n:510000
ASAP3   510000 perm   223 sec   (2291 perm/sec)   p_kst 5.666667e-04   p_cons 4.950784e-01   p_joint 3.313725e-04

Joint ci ratio: 2.289441e-01	ci left: 4.989865e-04	ci right 6.297594e-04	k: 292	n:520000
Cons ci ratio: 5.489498e-03	ci left: 4.937478e-01	ci right 4.964676e-01	k: 257456	n:520000
KS ci ratio: 2.289441e-01	ci left: 4.989865e-04	ci right 6.297594e-04	k: 292	n:520000
ASAP3   520000 perm   229 sec   (2268 perm/sec)   p_kst 5.615385e-04   p_cons 4.951077e-01   p_joint 5.615385e-04

Joint ci ratio: 2.273975e-01	ci left: 4.966874e-04	ci right 6.258551e-04	k: 296	n:530000
Cons ci ratio: 5.438000e-03	ci left: 4.937115e-01	ci right 4.964055e-01	k: 262381	n:530000
KS ci ratio: 2.273975e-01	ci left: 4.966874e-04	ci right 6.258551e-04	k: 296	n:530000
ASAP3   530000 perm   236 sec   (2246 perm/sec)   p_kst 5.584906e-04   p_cons 4.950585e-01   p_joint 5.584906e-04

Joint ci ratio: 2.247639e-01	ci left: 4.997184e-04	ci right 6.279609e-04	k: 303	n:540000
Cons ci ratio: 5.387404e-03	ci left: 4.937248e-01	ci right 4.963937e-01	k: 267332	n:540000
KS ci ratio: 2.247639e-01	ci left: 4.997184e-04	ci right 6.279609e-04	k: 303	n:540000
ASAP3   540000 perm   243 sec   (2224 perm/sec)   p_kst 5.611111e-04   p_cons 4.950593e-01   p_joint 5.611111e-04

Joint ci ratio: 2.236636e-01	ci left: 4.957807e-04	ci right 6.223040e-04	k: 306	n:550000
Cons ci ratio: 5.336856e-03	ci left: 4.938632e-01	ci right 4.965077e-01	k: 272352	n:550000
KS ci ratio: 2.236636e-01	ci left: 4.957807e-04	ci right 6.223040e-04	k: 306	n:550000
ASAP3   550000 perm   250 sec   (2203 perm/sec)   p_kst 5.563636e-04   p_cons 4.951855e-01   p_joint 5.563636e-04

Joint ci ratio: 2.222209e-01	ci left: 4.936714e-04	ci right 6.187326e-04	k: 310	n:560000
Cons ci ratio: 5.289253e-03	ci left: 4.938504e-01	ci right 4.964711e-01	k: 277290	n:560000
KS ci ratio: 2.222209e-01	ci left: 4.936714e-04	ci right 6.187326e-04	k: 310	n:560000
ASAP3   560000 perm   257 sec   (2183 perm/sec)   p_kst 5.535714e-04   p_cons 4.951607e-01   p_joint 5.535714e-04

Joint ci ratio: 2.197612e-01	ci left: 4.966116e-04	ci right 6.208369e-04	k: 317	n:570000
Cons ci ratio: 5.240639e-03	ci left: 4.940538e-01	ci right 4.966515e-01	k: 282351	n:570000
KS ci ratio: 2.197612e-01	ci left: 4.966116e-04	ci right 6.208369e-04	k: 317	n:570000
ASAP3   570000 perm   264 sec   (2162 perm/sec)   p_kst 5.561404e-04   p_cons 4.953526e-01   p_joint 5.561404e-04

Joint ci ratio: 2.183922e-01	ci left: 4.945674e-04	ci right 6.174072e-04	k: 321	n:580000
Cons ci ratio: 5.196547e-03	ci left: 4.939418e-01	ci right 4.965169e-01	k: 287233	n:580000
KS ci ratio: 2.183922e-01	ci left: 4.945674e-04	ci right 6.174072e-04	k: 321	n:580000
ASAP3   580000 perm   271 sec   (2141 perm/sec)   p_kst 5.534483e-04   p_cons 4.952293e-01   p_joint 5.534483e-04

Joint ci ratio: 2.167162e-01	ci left: 4.941977e-04	ci right 6.158784e-04	k: 326	n:590000
Cons ci ratio: 5.151923e-03	ci left: 4.939912e-01	ci right 4.965444e-01	k: 292208	n:590000
KS ci ratio: 2.167162e-01	ci left: 4.941977e-04	ci right 6.158784e-04	k: 326	n:590000
ASAP3   590000 perm   278 sec   (2121 perm/sec)   p_kst 5.525424e-04   p_cons 4.952678e-01   p_joint 5.525424e-04

Joint ci ratio: 2.147549e-01	ci left: 4.954208e-04	ci right 6.161532e-04	k: 332	n:600000
Cons ci ratio: 5.108362e-03	ci left: 4.940458e-01	ci right 4.965776e-01	k: 297187	n:600000
KS ci ratio: 2.147549e-01	ci left: 4.954208e-04	ci right 6.161532e-04	k: 332	n:600000
ASAP3   600000 perm   286 sec   (2101 perm/sec)   p_kst 5.533333e-04   p_cons 4.953117e-01   p_joint 5.533333e-04

Joint ci ratio: 2.131606e-01	ci left: 4.950567e-04	ci right 6.146876e-04	k: 337	n:610000
Cons ci ratio: 5.066403e-03	ci left: 4.940478e-01	ci right 4.965588e-01	k: 302135	n:610000
KS ci ratio: 2.131606e-01	ci left: 4.950567e-04	ci right 6.146876e-04	k: 337	n:610000
ASAP3   610000 perm   293 sec   (2080 perm/sec)   p_kst 5.524590e-04   p_cons 4.953033e-01   p_joint 5.524590e-04

Joint ci ratio: 2.109868e-01	ci left: 4.977627e-04	ci right 6.166622e-04	k: 344	n:620000
Cons ci ratio: 5.025185e-03	ci left: 4.940773e-01	ci right 4.965679e-01	k: 307100	n:620000
KS ci ratio: 2.109868e-01	ci left: 4.977627e-04	ci right 6.166622e-04	k: 344	n:620000
ASAP3   620000 perm   301 sec   (2061 perm/sec)   p_kst 5.548387e-04   p_cons 4.953226e-01   p_joint 5.548387e-04

Joint ci ratio: 2.097745e-01	ci left: 4.958763e-04	ci right 6.135573e-04	k: 348	n:630000
Cons ci ratio: 4.985147e-03	ci left: 4.940868e-01	ci right 4.965576e-01	k: 312053	n:630000
KS ci ratio: 2.097745e-01	ci left: 4.958763e-04	ci right 6.135573e-04	k: 348	n:630000
ASAP3   630000 perm   308 sec   (2042 perm/sec)   p_kst 5.523810e-04   p_cons 4.953222e-01   p_joint 5.523810e-04

Joint ci ratio: 2.082879e-01	ci left: 4.955318e-04	ci right 6.121913e-04	k: 353	n:640000
Cons ci ratio: 4.945880e-03	ci left: 4.941134e-01	ci right 4.965648e-01	k: 317017	n:640000
KS ci ratio: 2.082879e-01	ci left: 4.955318e-04	ci right 6.121913e-04	k: 353	n:640000
ASAP3   640000 perm   316 sec   (2024 perm/sec)   p_kst 5.515625e-04   p_cons 4.953391e-01   p_joint 5.515625e-04

Joint ci ratio: 2.056890e-01	ci left: 5.010369e-04	ci right 6.173356e-04	k: 362	n:650000
Cons ci ratio: 4.907090e-03	ci left: 4.941838e-01	ci right 4.966163e-01	k: 322010	n:650000
KS ci ratio: 2.056890e-01	ci left: 5.010369e-04	ci right 6.173356e-04	k: 362	n:650000
ASAP3   650000 perm   324 sec   (2006 perm/sec)   p_kst 5.569231e-04   p_cons 4.954000e-01   p_joint 5.569231e-04

Joint ci ratio: 2.048447e-01	ci left: 4.977572e-04	ci right 6.127609e-04	k: 365	n:660000
Cons ci ratio: 4.868932e-03	ci left: 4.942794e-01	ci right 4.966934e-01	k: 327021	n:660000
KS ci ratio: 2.048447e-01	ci left: 4.977572e-04	ci right 6.127609e-04	k: 365	n:660000
ASAP3   660000 perm   332 sec   (1987 perm/sec)   p_kst 5.530303e-04   p_cons 4.954864e-01   p_joint 5.530303e-04

Joint ci ratio: 2.029132e-01	ci left: 5.002424e-04	ci right 6.145956e-04	k: 372	n:670000
Cons ci ratio: 4.832328e-03	ci left: 4.943021e-01	ci right 4.966980e-01	k: 331985	n:670000
KS ci ratio: 2.029132e-01	ci left: 5.002424e-04	ci right 6.145956e-04	k: 372	n:670000
ASAP3   670000 perm   340 sec   (1970 perm/sec)   p_kst 5.552239e-04   p_cons 4.955000e-01   p_joint 5.552239e-04

Joint ci ratio: 2.013006e-01	ci left: 5.012630e-04	ci right 6.148268e-04	k: 378	n:680000
Cons ci ratio: 4.796806e-03	ci left: 4.942962e-01	ci right 4.966744e-01	k: 336930	n:680000
KS ci ratio: 2.013006e-01	ci left: 5.012630e-04	ci right 6.148268e-04	k: 378	n:680000
ASAP3   680000 perm   348 sec   (1953 perm/sec)   p_kst 5.558824e-04   p_cons 4.954853e-01   p_joint 5.558824e-04

Joint ci ratio: 1.994668e-01	ci left: 5.036343e-04	ci right 6.165695e-04	k: 385	n:690000
Cons ci ratio: 4.762015e-03	ci left: 4.942949e-01	ci right 4.966558e-01	k: 341878	n:690000
KS ci ratio: 1.994668e-01	ci left: 5.036343e-04	ci right 6.165695e-04	k: 385	n:690000
ASAP3   690000 perm   356 sec   (1937 perm/sec)   p_kst 5.579710e-04   p_cons 4.954754e-01   p_joint 5.579710e-04

Joint ci ratio: 1.964358e-01	ci left: 5.127330e-04	ci right 6.257524e-04	k: 397	n:700000
Cons ci ratio: 4.727577e-03	ci left: 4.943352e-01	ci right 4.966791e-01	k: 346855	n:700000
KS ci ratio: 1.964358e-01	ci left: 5.127330e-04	ci right 6.257524e-04	k: 397	n:700000
ASAP3   700000 perm   364 sec   (1921 perm/sec)   p_kst 5.671429e-04   p_cons 4.955071e-01   p_joint 5.671429e-04

Joint ci ratio: 1.949717e-01	ci left: 5.135481e-04	ci right 6.258032e-04	k: 403	n:710000
Cons ci ratio: 4.694260e-03	ci left: 4.943335e-01	ci right 4.966609e-01	k: 351803	n:710000
KS ci ratio: 1.949717e-01	ci left: 5.135481e-04	ci right 6.258032e-04	k: 403	n:710000
ASAP3   710000 perm   373 sec   (1905 perm/sec)   p_kst 5.676056e-04   p_cons 4.954972e-01   p_joint 5.676056e-04

Joint ci ratio: 1.937763e-01	ci left: 5.130220e-04	ci right 6.243935e-04	k: 408	n:720000
Cons ci ratio: 4.660705e-03	ci left: 4.944320e-01	ci right 4.967431e-01	k: 356823	n:720000
KS ci ratio: 1.937763e-01	ci left: 5.130220e-04	ci right 6.243935e-04	k: 408	n:720000
ASAP3   720000 perm   381 sec   (1890 perm/sec)   p_kst 5.666667e-04   p_cons 4.955875e-01   p_joint 5.666667e-04

Joint ci ratio: 1.928359e-01	ci left: 5.112085e-04	ci right 6.215846e-04	k: 412	n:730000
Cons ci ratio: 4.629128e-03	ci left: 4.943908e-01	ci right 4.966860e-01	k: 361743	n:730000
KS ci ratio: 1.928359e-01	ci left: 5.112085e-04	ci right 6.215846e-04	k: 412	n:730000
ASAP3   730000 perm   389 sec   (1874 perm/sec)   p_kst 5.643836e-04   p_cons 4.955384e-01   p_joint 5.643836e-04

Joint ci ratio: 1.905423e-01	ci left: 5.171655e-04	ci right 6.273458e-04	k: 422	n:740000
Cons ci ratio: 4.597227e-03	ci left: 4.944548e-01	ci right 4.967344e-01	k: 366740	n:740000
KS ci ratio: 1.905423e-01	ci left: 5.171655e-04	ci right 6.273458e-04	k: 422	n:740000
ASAP3   740000 perm   398 sec   (1859 perm/sec)   p_kst 5.702703e-04   p_cons 4.955946e-01   p_joint 5.702703e-04

Joint ci ratio: 1.881114e-01	ci left: 5.242416e-04	ci right 6.343419e-04	k: 433	n:750000
Cons ci ratio: 4.566341e-03	ci left: 4.944771e-01	ci right 4.967416e-01	k: 371707	n:750000
KS ci ratio: 1.881114e-01	ci left: 5.242416e-04	ci right 6.343419e-04	k: 433	n:750000
ASAP3   750000 perm   407 sec   (1845 perm/sec)   p_kst 5.773333e-04   p_cons 4.956093e-01   p_joint 5.773333e-04

Joint ci ratio: 1.868244e-01	ci left: 5.248680e-04	ci right 6.342601e-04	k: 439	n:760000
Cons ci ratio: 4.536882e-03	ci left: 4.944095e-01	ci right 4.966590e-01	k: 376606	n:760000
KS ci ratio: 1.868244e-01	ci left: 5.248680e-04	ci right 6.342601e-04	k: 439	n:760000
ASAP3   760000 perm   415 sec   (1830 perm/sec)   p_kst 5.776316e-04   p_cons 4.955342e-01   p_joint 5.776316e-04

Joint ci ratio: 1.857720e-01	ci left: 5.242422e-04	ci right 6.328190e-04	k: 444	n:770000
Cons ci ratio: 4.507938e-03	ci left: 4.943489e-01	ci right 4.965836e-01	k: 381509	n:770000
KS ci ratio: 1.857720e-01	ci left: 5.242422e-04	ci right 6.328190e-04	k: 444	n:770000
ASAP3   770000 perm   424 sec   (1816 perm/sec)   p_kst 5.766234e-04   p_cons 4.954662e-01   p_joint 5.766234e-04

Joint ci ratio: 1.847371e-01	ci left: 5.236341e-04	ci right 6.314132e-04	k: 449	n:780000
Cons ci ratio: 4.478783e-03	ci left: 4.943744e-01	ci right 4.965948e-01	k: 386478	n:780000
KS ci ratio: 1.847371e-01	ci left: 5.236341e-04	ci right 6.314132e-04	k: 449	n:780000
ASAP3   780000 perm   433 sec   (1802 perm/sec)   p_kst 5.756410e-04   p_cons 4.954846e-01   p_joint 5.756410e-04

Joint ci ratio: 1.843284e-01	ci left: 5.194204e-04	ci right 6.260692e-04	k: 451	n:790000
Cons ci ratio: 4.450885e-03	ci left: 4.943209e-01	ci right 4.965272e-01	k: 391385	n:790000
KS ci ratio: 1.843284e-01	ci left: 5.194204e-04	ci right 6.260692e-04	k: 451	n:790000
ASAP3   790000 perm   442 sec   (1789 perm/sec)   p_kst 5.708861e-04   p_cons 4.954241e-01   p_joint 5.708861e-04

Joint ci ratio: 1.833174e-01	ci left: 5.188900e-04	ci right 6.247806e-04	k: 456	n:800000
Cons ci ratio: 4.422540e-03	ci left: 4.943775e-01	ci right 4.965700e-01	k: 396379	n:800000
KS ci ratio: 1.833174e-01	ci left: 5.188900e-04	ci right 6.247806e-04	k: 456	n:800000
ASAP3   800000 perm   451 sec   (1775 perm/sec)   p_kst 5.700000e-04   p_cons 4.954737e-01   p_joint 5.700000e-04

Joint ci ratio: 1.831177e-01	ci left: 5.136618e-04	ci right 6.183586e-04	k: 457	n:810000
Cons ci ratio: 4.394253e-03	ci left: 4.944871e-01	ci right 4.966660e-01	k: 401417	n:810000
KS ci ratio: 1.831177e-01	ci left: 5.136618e-04	ci right 6.183586e-04	k: 457	n:810000
ASAP3   810000 perm   460 sec   (1760 perm/sec)   p_kst 5.641975e-04   p_cons 4.955765e-01   p_joint 5.641975e-04

Joint ci ratio: 1.817340e-01	ci left: 5.155445e-04	ci right 6.197436e-04	k: 464	n:820000
Cons ci ratio: 4.366575e-03	ci left: 4.945855e-01	ci right 4.967511e-01	k: 406448	n:820000
KS ci ratio: 1.817340e-01	ci left: 5.155445e-04	ci right 6.197436e-04	k: 464	n:820000
ASAP3   820000 perm   469 sec   (1747 perm/sec)   p_kst 5.658537e-04   p_cons 4.956683e-01   p_joint 5.658537e-04

Joint ci ratio: 1.803812e-01	ci left: 5.173846e-04	ci right 6.210923e-04	k: 471	n:830000
Cons ci ratio: 4.340302e-03	ci left: 4.945792e-01	ci right 4.967317e-01	k: 411394	n:830000
KS ci ratio: 1.803812e-01	ci left: 5.173846e-04	ci right 6.210923e-04	k: 471	n:830000
ASAP3   830000 perm   479 sec   (1732 perm/sec)   p_kst 5.674699e-04   p_cons 4.956554e-01   p_joint 5.674699e-04

Joint ci ratio: 1.798110e-01	ci left: 5.146357e-04	ci right 6.174307e-04	k: 474	n:840000
Cons ci ratio: 4.314724e-03	ci left: 4.945469e-01	ci right 4.966865e-01	k: 416318	n:840000
KS ci ratio: 1.798110e-01	ci left: 5.146357e-04	ci right 6.174307e-04	k: 474	n:840000
ASAP3   840000 perm   489 sec   (1719 perm/sec)   p_kst 5.642857e-04   p_cons 4.956167e-01   p_joint 5.642857e-04

Joint ci ratio: 1.792461e-01	ci left: 5.119519e-04	ci right 6.138547e-04	k: 477	n:850000
Cons ci ratio: 4.289502e-03	ci left: 4.945259e-01	ci right 4.966529e-01	k: 421251	n:850000
KS ci ratio: 1.792461e-01	ci left: 5.119519e-04	ci right 6.138547e-04	k: 477	n:850000
ASAP3   850000 perm   498 sec   (1707 perm/sec)   p_kst 5.611765e-04   p_cons 4.955894e-01   p_joint 5.611765e-04

Joint ci ratio: 1.777645e-01	ci left: 5.148857e-04	ci right 6.164343e-04	k: 485	n:860000
Cons ci ratio: 4.264371e-03	ci left: 4.945462e-01	ci right 4.966608e-01	k: 426219	n:860000
KS ci ratio: 1.777645e-01	ci left: 5.148857e-04	ci right 6.164343e-04	k: 485	n:860000
ASAP3   860000 perm   507 sec   (1695 perm/sec)   p_kst 5.639535e-04   p_cons 4.956035e-01   p_joint 5.639535e-04

Joint ci ratio: 1.774002e-01	ci left: 5.111640e-04	ci right 6.117499e-04	k: 487	n:870000
Cons ci ratio: 4.239578e-03	ci left: 4.945776e-01	ci right 4.966799e-01	k: 431197	n:870000
KS ci ratio: 1.774002e-01	ci left: 5.111640e-04	ci right 6.117499e-04	k: 487	n:870000
ASAP3   870000 perm   517 sec   (1682 perm/sec)   p_kst 5.597701e-04   p_cons 4.956287e-01   p_joint 5.597701e-04

Joint ci ratio: 1.766777e-01	ci left: 5.096994e-04	ci right 6.095449e-04	k: 491	n:880000
Cons ci ratio: 4.215098e-03	ci left: 4.946219e-01	ci right 4.967123e-01	k: 436187	n:880000
KS ci ratio: 1.766777e-01	ci left: 5.096994e-04	ci right 6.095449e-04	k: 491	n:880000
ASAP3   880000 perm   527 sec   (1670 perm/sec)   p_kst 5.579545e-04   p_cons 4.956670e-01   p_joint 5.579545e-04

Joint ci ratio: 1.761418e-01	ci left: 5.071943e-04	ci right 6.062156e-04	k: 494	n:890000
Cons ci ratio: 4.190942e-03	ci left: 4.946764e-01	ci right 4.967550e-01	k: 441187	n:890000
KS ci ratio: 1.761418e-01	ci left: 5.071943e-04	ci right 6.062156e-04	k: 494	n:890000
ASAP3   890000 perm   537 sec   (1657 perm/sec)   p_kst 5.550562e-04   p_cons 4.957157e-01   p_joint 5.550562e-04

Joint ci ratio: 1.756107e-01	ci left: 5.047453e-04	ci right 6.029599e-04	k: 497	n:900000
Cons ci ratio: 4.167577e-03	ci left: 4.946843e-01	ci right 4.967513e-01	k: 446146	n:900000
KS ci ratio: 1.756107e-01	ci left: 5.047453e-04	ci right 6.029599e-04	k: 497	n:900000
ASAP3   900000 perm   547 sec   (1646 perm/sec)   p_kst 5.522222e-04   p_cons 4.957178e-01   p_joint 5.522222e-04

Joint ci ratio: 1.745622e-01	ci left: 5.055032e-04	ci right 6.032160e-04	k: 503	n:910000
Cons ci ratio: 4.144116e-03	ci left: 4.947502e-01	ci right 4.968058e-01	k: 451158	n:910000
KS ci ratio: 1.745622e-01	ci left: 5.055032e-04	ci right 6.032160e-04	k: 503	n:910000
ASAP3   910000 perm   557 sec   (1634 perm/sec)   p_kst 5.527473e-04   p_cons 4.957780e-01   p_joint 5.527473e-04

Joint ci ratio: 2.305519e-01	ci left: 2.779345e-04	ci right 3.513587e-04	k: 288	n:920000
Cons ci ratio: 4.122767e-03	ci left: 4.946061e-01	ci right 4.966505e-01	k: 455978	n:920000
KS ci ratio: 1.726874e-01	ci left: 5.114457e-04	ci right 6.091347e-04	k: 514	n:920000
ASAP3   920000 perm   567 sec   (1622 perm/sec)   p_kst 5.586957e-04   p_cons 4.956283e-01   p_joint 3.130435e-04

Joint ci ratio: 2.297584e-01	ci left: 2.769724e-04	ci right 3.498550e-04	k: 290	n:930000
Cons ci ratio: 4.100041e-03	ci left: 4.946726e-01	ci right 4.967060e-01	k: 460991	n:930000
KS ci ratio: 1.723534e-01	ci left: 5.080038e-04	ci right 6.048283e-04	k: 516	n:930000
ASAP3   930000 perm   577 sec   (1611 perm/sec)   p_kst 5.548387e-04   p_cons 4.956892e-01   p_joint 3.118280e-04

Joint ci ratio: 2.285832e-01	ci left: 2.770342e-04	ci right 3.495075e-04	k: 293	n:940000
Cons ci ratio: 4.078425e-03	ci left: 4.946473e-01	ci right 4.966698e-01	k: 465919	n:940000
KS ci ratio: 1.715260e-01	ci left: 5.076898e-04	ci right 6.039418e-04	k: 521	n:940000
ASAP3   940000 perm   588 sec   (1600 perm/sec)   p_kst 5.542553e-04   p_cons 4.956585e-01   p_joint 3.117021e-04

Joint ci ratio: 2.278098e-01	ci left: 2.761030e-04	ci right 3.480539e-04	k: 295	n:950000
Cons ci ratio: 4.057275e-03	ci left: 4.946067e-01	ci right 4.966186e-01	k: 470832	n:950000
KS ci ratio: 1.703872e-01	ci left: 5.093989e-04	ci right 6.052679e-04	k: 528	n:950000
ASAP3   950000 perm   598 sec   (1589 perm/sec)   p_kst 5.557895e-04   p_cons 4.956126e-01   p_joint 3.105263e-04

Joint ci ratio: 2.274262e-01	ci left: 2.742091e-04	ci right 3.455294e-04	k: 296	n:960000
Cons ci ratio: 4.036695e-03	ci left: 4.945368e-01	ci right 4.965382e-01	k: 475716	n:960000
KS ci ratio: 1.699064e-01	ci left: 5.070845e-04	ci right 6.022210e-04	k: 531	n:960000
ASAP3   960000 perm   608 sec   (1578 perm/sec)   p_kst 5.531250e-04   p_cons 4.955375e-01   p_joint 3.083333e-04

Joint ci ratio: 2.255354e-01	ci left: 2.762445e-04	ci right 3.474137e-04	k: 301	n:970000
Cons ci ratio: 4.015447e-03	ci left: 4.945901e-01	ci right 4.965811e-01	k: 480718	n:970000
KS ci ratio: 1.684869e-01	ci left: 5.107424e-04	ci right 6.056833e-04	k: 540	n:970000
ASAP3   970000 perm   619 sec   (1568 perm/sec)   p_kst 5.567010e-04   p_cons 4.955856e-01   p_joint 3.103093e-04

Joint ci ratio: 2.251632e-01	ci left: 2.743884e-04	ci right 3.449467e-04	k: 302	n:980000
Cons ci ratio: 3.994817e-03	ci left: 4.946065e-01	ci right 4.965874e-01	k: 485685	n:980000
KS ci ratio: 1.677137e-01	ci left: 5.104181e-04	ci right 6.048194e-04	k: 545	n:980000
ASAP3   980000 perm   629 sec   (1557 perm/sec)   p_kst 5.561224e-04   p_cons 4.955969e-01   p_joint 3.081633e-04

Joint ci ratio: 2.240567e-01	ci left: 2.744767e-04	ci right 3.446629e-04	k: 305	n:990000
Cons ci ratio: 3.975064e-03	ci left: 4.945520e-01	ci right 4.965228e-01	k: 490582	n:990000
KS ci ratio: 1.671028e-01	ci left: 5.091335e-04	ci right 6.029197e-04	k: 549	n:990000
ASAP3   990000 perm   640 sec   (1547 perm/sec)   p_kst 5.545455e-04   p_cons 4.955374e-01   p_joint 3.080808e-04

Joint ci ratio: 2.222481e-01	ci left: 2.764525e-04	ci right 3.464952e-04	k: 310	n:1000000
Cons ci ratio: 3.954667e-03	ci left: 4.946166e-01	ci right 4.965775e-01	k: 495597	n:1000000
KS ci ratio: 1.657519e-01	ci left: 5.126674e-04	ci right 6.062649e-04	k: 558	n:1000000
ASAP3   1000000 perm   651 sec   (1536 perm/sec)   p_kst 5.580000e-04   p_cons 4.955970e-01   p_joint 3.100000e-04

Joint ci ratio: 2.204826e-01	ci left: 2.783914e-04	ci right 3.482891e-04	k: 315	n:1010000
Cons ci ratio: 3.934737e-03	ci left: 4.946601e-01	ci right 4.966112e-01	k: 500592	n:1010000
KS ci ratio: 1.644332e-01	ci left: 5.161343e-04	ci right 6.095409e-04	k: 567	n:1010000
ASAP3   1010000 perm   662 sec   (1526 perm/sec)   p_kst 5.613861e-04   p_cons 4.956356e-01   p_joint 3.118812e-04

Joint ci ratio: 2.194434e-01	ci left: 2.784412e-04	ci right 3.479774e-04	k: 318	n:1020000
Cons ci ratio: 3.915542e-03	ci left: 4.946469e-01	ci right 4.965884e-01	k: 505530	n:1020000
KS ci ratio: 1.635715e-01	ci left: 5.167151e-04	ci right 6.096886e-04	k: 573	n:1020000
ASAP3   1020000 perm   673 sec   (1516 perm/sec)   p_kst 5.617647e-04   p_cons 4.956176e-01   p_joint 3.117647e-04

Joint ci ratio: 2.184188e-01	ci left: 2.784908e-04	ci right 3.476711e-04	k: 321	n:1030000
Cons ci ratio: 3.896520e-03	ci left: 4.946476e-01	ci right 4.965797e-01	k: 510482	n:1030000
KS ci ratio: 1.631459e-01	ci left: 5.144919e-04	ci right 6.068009e-04	k: 576	n:1030000
ASAP3   1030000 perm   684 sec   (1506 perm/sec)   p_kst 5.592233e-04   p_cons 4.956136e-01   p_joint 3.116505e-04

Joint ci ratio: 2.177437e-01	ci left: 2.776310e-04	ci right 3.463561e-04	k: 323	n:1040000
Cons ci ratio: 3.878332e-03	ci left: 4.945761e-01	ci right 4.964989e-01	k: 515359	n:1040000
KS ci ratio: 1.623042e-01	ci left: 5.150792e-04	ci right 6.069703e-04	k: 582	n:1040000
ASAP3   1040000 perm   695 sec   (1496 perm/sec)   p_kst 5.596154e-04   p_cons 4.955375e-01   p_joint 3.105769e-04

Joint ci ratio: 2.167426e-01	ci left: 2.776886e-04	ci right 3.460698e-04	k: 326	n:1050000
Cons ci ratio: 3.860322e-03	ci left: 4.945156e-01	ci right 4.964292e-01	k: 520246	n:1050000
KS ci ratio: 1.617504e-01	ci left: 5.138287e-04	ci right 6.051535e-04	k: 586	n:1050000
ASAP3   1050000 perm   706 sec   (1487 perm/sec)   p_kst 5.580952e-04   p_cons 4.954724e-01   p_joint 3.104762e-04

Joint ci ratio: 2.154289e-01	ci left: 2.786383e-04	ci right 3.467825e-04	k: 330	n:1060000
Cons ci ratio: 3.842416e-03	ci left: 4.944751e-01	ci right 4.963796e-01	k: 525153	n:1060000
KS ci ratio: 1.609300e-01	ci left: 5.144131e-04	ci right 6.053332e-04	k: 592	n:1060000
ASAP3   1060000 perm   717 sec   (1478 perm/sec)   p_kst 5.584906e-04   p_cons 4.954274e-01   p_joint 3.113208e-04

Joint ci ratio: 2.144593e-01	ci left: 2.786870e-04	ci right 3.464959e-04	k: 333	n:1070000
Cons ci ratio: 3.824835e-03	ci left: 4.944251e-01	ci right 4.963207e-01	k: 530049	n:1070000
KS ci ratio: 1.603901e-01	ci left: 5.131935e-04	ci right 6.035644e-04	k: 596	n:1070000
ASAP3   1070000 perm   729 sec   (1468 perm/sec)   p_kst 5.570093e-04   p_cons 4.953729e-01   p_joint 3.112150e-04

Joint ci ratio: 2.138202e-01	ci left: 2.778591e-04	ci right 3.452387e-04	k: 335	n:1080000
Cons ci ratio: 3.807085e-03	ci left: 4.944298e-01	ci right 4.963166e-01	k: 535003	n:1080000
KS ci ratio: 1.595901e-01	ci left: 5.137748e-04	ci right 6.037536e-04	k: 602	n:1080000
ASAP3   1080000 perm   740 sec   (1459 perm/sec)   p_kst 5.574074e-04   p_cons 4.953731e-01   p_joint 3.101852e-04

Joint ci ratio: 1.584120e-01	ci left: 5.169897e-04	ci right 6.067997e-04	k: 611	n:1090000
Cons ci ratio: 3.789391e-03	ci left: 4.944591e-01	ci right 4.963372e-01	k: 539984	n:1090000
KS ci ratio: 1.584120e-01	ci left: 5.169897e-04	ci right 6.067997e-04	k: 611	n:1090000
ASAP3   1090000 perm   752 sec   (1449 perm/sec)   p_kst 5.605505e-04   p_cons 4.953982e-01   p_joint 5.605505e-04

Joint ci ratio: 1.570069e-01	ci left: 5.218953e-04	ci right 6.116775e-04	k: 622	n:1100000
Cons ci ratio: 3.771400e-03	ci left: 4.945598e-01	ci right 4.964293e-01	k: 545044	n:1100000
KS ci ratio: 1.570069e-01	ci left: 5.218953e-04	ci right 6.116775e-04	k: 622	n:1100000
ASAP3   1100000 perm   764 sec   (1440 perm/sec)   p_kst 5.654545e-04   p_cons 4.954945e-01   p_joint 5.654545e-04

Joint ci ratio: 1.565054e-01	ci left: 5.206558e-04	ci right 6.099118e-04	k: 626	n:1110000
Cons ci ratio: 3.754042e-03	ci left: 4.946082e-01	ci right 4.964693e-01	k: 550048	n:1110000
KS ci ratio: 1.565054e-01	ci left: 5.206558e-04	ci right 6.099118e-04	k: 626	n:1110000
ASAP3   1110000 perm   776 sec   (1431 perm/sec)   p_kst 5.639640e-04   p_cons 4.955387e-01   p_joint 5.639640e-04

Joint ci ratio: 1.558852e-01	ci left: 5.202968e-04	ci right 6.091048e-04	k: 631	n:1120000
Cons ci ratio: 3.737381e-03	ci left: 4.945941e-01	ci right 4.964470e-01	k: 554983	n:1120000
KS ci ratio: 1.558852e-01	ci left: 5.202968e-04	ci right 6.091048e-04	k: 631	n:1120000
ASAP3   1120000 perm   787 sec   (1422 perm/sec)   p_kst 5.633929e-04   p_cons 4.955205e-01   p_joint 5.633929e-04

Joint ci ratio: 1.551504e-01	ci left: 5.207956e-04	ci right 6.092306e-04	k: 637	n:1130000
Cons ci ratio: 3.720888e-03	ci left: 4.945875e-01	ci right 4.964320e-01	k: 559926	n:1130000
KS ci ratio: 1.551504e-01	ci left: 5.207956e-04	ci right 6.092306e-04	k: 637	n:1130000
ASAP3   1130000 perm   800 sec   (1413 perm/sec)   p_kst 5.637168e-04   p_cons 4.955097e-01   p_joint 5.637168e-04

Joint ci ratio: 1.549080e-01	ci left: 5.179134e-04	ci right 6.057090e-04	k: 639	n:1140000
Cons ci ratio: 3.704468e-03	ci left: 4.946002e-01	ci right 4.964367e-01	k: 564891	n:1140000
KS ci ratio: 1.549080e-01	ci left: 5.179134e-04	ci right 6.057090e-04	k: 639	n:1140000
ASAP3   1140000 perm   812 sec   (1404 perm/sec)   p_kst 5.605263e-04   p_cons 4.955184e-01   p_joint 5.605263e-04

Joint ci ratio: 1.541869e-01	ci left: 5.184255e-04	ci right 6.058609e-04	k: 645	n:1150000
Cons ci ratio: 3.688744e-03	ci left: 4.945475e-01	ci right 4.963760e-01	k: 569781	n:1150000
KS ci ratio: 1.541869e-01	ci left: 5.184255e-04	ci right 6.058609e-04	k: 645	n:1150000
ASAP3   1150000 perm   824 sec   (1395 perm/sec)   p_kst 5.608696e-04   p_cons 4.954617e-01   p_joint 5.608696e-04

Joint ci ratio: 1.532408e-01	ci left: 5.205876e-04	ci right 6.077996e-04	k: 653	n:1160000
Cons ci ratio: 3.672599e-03	ci left: 4.945802e-01	ci right 4.964008e-01	k: 574769	n:1160000
KS ci ratio: 1.532408e-01	ci left: 5.205876e-04	ci right 6.077996e-04	k: 653	n:1160000
ASAP3   1160000 perm   836 sec   (1387 perm/sec)   p_kst 5.629310e-04   p_cons 4.954905e-01   p_joint 5.629310e-04

Joint ci ratio: 1.524272e-01	ci left: 5.218923e-04	ci right 6.088162e-04	k: 660	n:1170000
Cons ci ratio: 3.657007e-03	ci left: 4.945654e-01	ci right 4.963782e-01	k: 579702	n:1170000
KS ci ratio: 1.524272e-01	ci left: 5.218923e-04	ci right 6.088162e-04	k: 660	n:1170000
ASAP3   1170000 perm   849 sec   (1379 perm/sec)   p_kst 5.641026e-04   p_cons 4.954718e-01   p_joint 5.641026e-04

Joint ci ratio: 1.520826e-01	ci left: 5.199150e-04	ci right 6.062959e-04	k: 663	n:1180000
Cons ci ratio: 3.641526e-03	ci left: 4.945627e-01	ci right 4.963678e-01	k: 584649	n:1180000
KS ci ratio: 1.520826e-01	ci left: 5.199150e-04	ci right 6.062959e-04	k: 663	n:1180000
ASAP3   1180000 perm   861 sec   (1371 perm/sec)   p_kst 5.618644e-04   p_cons 4.954653e-01   p_joint 5.618644e-04

Joint ci ratio: 1.514001e-01	ci left: 5.203965e-04	ci right 6.064343e-04	k: 669	n:1190000
Cons ci ratio: 3.625935e-03	ci left: 4.946021e-01	ci right 4.963996e-01	k: 589646	n:1190000
KS ci ratio: 1.514001e-01	ci left: 5.203965e-04	ci right 6.064343e-04	k: 669	n:1190000
ASAP3   1190000 perm   874 sec   (1362 perm/sec)   p_kst 5.621849e-04   p_cons 4.955008e-01   p_joint 5.621849e-04

Joint ci ratio: 1.509503e-01	ci left: 5.192671e-04	ci right 6.048401e-04	k: 673	n:1200000
Cons ci ratio: 3.611211e-03	ci left: 4.945484e-01	ci right 4.963383e-01	k: 594532	n:1200000
KS ci ratio: 1.509503e-01	ci left: 5.192671e-04	ci right 6.048401e-04	k: 673	n:1200000
ASAP3   1200000 perm   886 sec   (1354 perm/sec)   p_kst 5.608333e-04   p_cons 4.954433e-01   p_joint 5.608333e-04

Joint ci ratio: 1.506156e-01	ci left: 5.173614e-04	ci right 6.024142e-04	k: 676	n:1210000
Cons ci ratio: 3.596278e-03	ci left: 4.945492e-01	ci right 4.963318e-01	k: 599483	n:1210000
KS ci ratio: 1.506156e-01	ci left: 5.173614e-04	ci right 6.024142e-04	k: 676	n:1210000
ASAP3   1210000 perm   899 sec   (1346 perm/sec)   p_kst 5.586777e-04   p_cons 4.954405e-01   p_joint 5.586777e-04

Joint ci ratio: 1.500625e-01	ci left: 5.170649e-04	ci right 6.017289e-04	k: 681	n:1220000
Cons ci ratio: 3.581112e-03	ci left: 4.946083e-01	ci right 4.963835e-01	k: 604505	n:1220000
KS ci ratio: 1.500625e-01	ci left: 5.170649e-04	ci right 6.017289e-04	k: 681	n:1220000
ASAP3   1220000 perm   912 sec   (1338 perm/sec)   p_kst 5.581967e-04   p_cons 4.954959e-01   p_joint 5.581967e-04

Joint ci ratio: 1.498432e-01	ci left: 5.144261e-04	ci right 5.985238e-04	k: 683	n:1230000
Cons ci ratio: 3.566908e-03	ci left: 4.945583e-01	ci right 4.963263e-01	k: 609394	n:1230000
KS ci ratio: 1.498432e-01	ci left: 5.144261e-04	ci right 5.985238e-04	k: 683	n:1230000
ASAP3   1230000 perm   925 sec   (1330 perm/sec)   p_kst 5.552846e-04   p_cons 4.954423e-01   p_joint 5.552846e-04

Joint ci ratio: 1.494071e-01	ci left: 5.133825e-04	ci right 5.970435e-04	k: 687	n:1240000
Cons ci ratio: 3.552057e-03	ci left: 4.946236e-01	ci right 4.963845e-01	k: 614425	n:1240000
KS ci ratio: 1.494071e-01	ci left: 5.133825e-04	ci right 5.970435e-04	k: 687	n:1240000
ASAP3   1240000 perm   938 sec   (1322 perm/sec)   p_kst 5.540323e-04   p_cons 4.955040e-01   p_joint 5.540323e-04

Joint ci ratio: 1.486527e-01	ci left: 5.146666e-04	ci right 5.980758e-04	k: 694	n:1250000
Cons ci ratio: 3.537334e-03	ci left: 4.946959e-01	ci right 4.964497e-01	k: 619466	n:1250000
KS ci ratio: 1.486527e-01	ci left: 5.146666e-04	ci right 5.980758e-04	k: 694	n:1250000
ASAP3   1250000 perm   951 sec   (1315 perm/sec)   p_kst 5.552000e-04   p_cons 4.955728e-01   p_joint 5.552000e-04

Joint ci ratio: 1.482268e-01	ci left: 5.136387e-04	ci right 5.966216e-04	k: 698	n:1260000
Cons ci ratio: 3.523301e-03	ci left: 4.946949e-01	ci right 4.964417e-01	k: 624416	n:1260000
KS ci ratio: 1.482268e-01	ci left: 5.136387e-04	ci right 5.966216e-04	k: 698	n:1260000
ASAP3   1260000 perm   964 sec   (1307 perm/sec)   p_kst 5.539683e-04   p_cons 4.955683e-01   p_joint 5.539683e-04

Joint ci ratio: 1.478046e-01	ci left: 5.126272e-04	ci right 5.951900e-04	k: 702	n:1270000
Cons ci ratio: 3.509318e-03	ci left: 4.947104e-01	ci right 4.964503e-01	k: 629387	n:1270000
KS ci ratio: 1.478046e-01	ci left: 5.126272e-04	ci right 5.951900e-04	k: 702	n:1270000
ASAP3   1270000 perm   977 sec   (1300 perm/sec)   p_kst 5.527559e-04   p_cons 4.955803e-01   p_joint 5.527559e-04

Joint ci ratio: 1.471779e-01	ci left: 5.131368e-04	ci right 5.954004e-04	k: 708	n:1280000
Cons ci ratio: 3.495450e-03	ci left: 4.947327e-01	ci right 4.964658e-01	k: 634367	n:1280000
KS ci ratio: 1.471779e-01	ci left: 5.131368e-04	ci right 5.954004e-04	k: 708	n:1280000
ASAP3   1280000 perm   990 sec   (1293 perm/sec)   p_kst 5.531250e-04   p_cons 4.955992e-01   p_joint 5.531250e-04

Joint ci ratio: 1.463543e-01	ci left: 5.151329e-04	ci right 5.972140e-04	k: 716	n:1290000
Cons ci ratio: 3.481163e-03	ci left: 4.948384e-01	ci right 4.965647e-01	k: 639455	n:1290000
KS ci ratio: 1.463543e-01	ci left: 5.151329e-04	ci right 5.972140e-04	k: 716	n:1290000
ASAP3   1290000 perm   1004 sec   (1285 perm/sec)   p_kst 5.550388e-04   p_cons 4.957016e-01   p_joint 5.550388e-04

Joint ci ratio: 1.459479e-01	ci left: 5.141347e-04	ci right 5.958094e-04	k: 720	n:1300000
Cons ci ratio: 3.468015e-03	ci left: 4.948032e-01	ci right 4.965229e-01	k: 644362	n:1300000
KS ci ratio: 1.459479e-01	ci left: 5.141347e-04	ci right 5.958094e-04	k: 720	n:1300000
ASAP3   1300000 perm   1017 sec   (1278 perm/sec)   p_kst 5.538462e-04   p_cons 4.956631e-01   p_joint 5.538462e-04

Joint ci ratio: 1.458470e-01	ci left: 5.109455e-04	ci right 5.920525e-04	k: 721	n:1310000
Cons ci ratio: 3.454625e-03	ci left: 4.948251e-01	ci right 4.965383e-01	k: 649343	n:1310000
KS ci ratio: 1.458470e-01	ci left: 5.109455e-04	ci right 5.920525e-04	k: 721	n:1310000
ASAP3   1310000 perm   1031 sec   (1271 perm/sec)   p_kst 5.503817e-04   p_cons 4.956817e-01   p_joint 5.503817e-04

Joint ci ratio: 1.453447e-01	ci left: 5.107245e-04	ci right 5.914931e-04	k: 726	n:1320000
Cons ci ratio: 3.441430e-03	ci left: 4.948406e-01	ci right 4.965473e-01	k: 654316	n:1320000
KS ci ratio: 1.453447e-01	ci left: 5.107245e-04	ci right 5.914931e-04	k: 726	n:1320000
ASAP3   1320000 perm   1045 sec   (1264 perm/sec)   p_kst 5.500000e-04   p_cons 4.956939e-01   p_joint 5.500000e-04

Joint ci ratio: 1.447485e-01	ci left: 5.112321e-04	ci right 5.917206e-04	k: 732	n:1330000
Cons ci ratio: 3.428725e-03	ci left: 4.948063e-01	ci right 4.965065e-01	k: 659223	n:1330000
KS ci ratio: 1.447485e-01	ci left: 5.112321e-04	ci right 5.917206e-04	k: 732	n:1330000
ASAP3   1330000 perm   1058 sec   (1257 perm/sec)   p_kst 5.503759e-04   p_cons 4.956564e-01   p_joint 5.503759e-04

Joint ci ratio: 1.437709e-01	ci left: 5.146103e-04	ci right 5.950366e-04	k: 742	n:1340000
Cons ci ratio: 3.415528e-03	ci left: 4.948650e-01	ci right 4.965589e-01	k: 664254	n:1340000
KS ci ratio: 1.437709e-01	ci left: 5.146103e-04	ci right 5.950366e-04	k: 742	n:1340000
ASAP3   1340000 perm   1072 sec   (1250 perm/sec)   p_kst 5.537313e-04   p_cons 4.957119e-01   p_joint 5.537313e-04

Joint ci ratio: 1.430030e-01	ci left: 5.165118e-04	ci right 5.967672e-04	k: 750	n:1350000
Cons ci ratio: 3.403016e-03	ci left: 4.948444e-01	ci right 4.965319e-01	k: 669179	n:1350000
KS ci ratio: 1.430030e-01	ci left: 5.165118e-04	ci right 5.967672e-04	k: 750	n:1350000
ASAP3   1350000 perm   1086 sec   (1243 perm/sec)   p_kst 5.555556e-04   p_cons 4.956881e-01   p_joint 5.555556e-04

Joint ci ratio: 1.422472e-01	ci left: 5.183864e-04	ci right 5.984713e-04	k: 758	n:1360000
Cons ci ratio: 3.390117e-03	ci left: 4.949013e-01	ci right 4.965826e-01	k: 674209	n:1360000
KS ci ratio: 1.422472e-01	ci left: 5.183864e-04	ci right 5.984713e-04	k: 758	n:1360000
ASAP3   1360000 perm   1100 sec   (1236 perm/sec)   p_kst 5.573529e-04   p_cons 4.957419e-01   p_joint 5.573529e-04

Joint ci ratio: 1.416883e-01	ci left: 5.188265e-04	ci right 5.986379e-04	k: 764	n:1370000
Cons ci ratio: 3.377576e-03	ci left: 4.949259e-01	ci right 4.966011e-01	k: 679196	n:1370000
KS ci ratio: 1.416883e-01	ci left: 5.188265e-04	ci right 5.986379e-04	k: 764	n:1370000
ASAP3   1370000 perm   1114 sec   (1229 perm/sec)   p_kst 5.576642e-04   p_cons 4.957635e-01   p_joint 5.576642e-04

Joint ci ratio: 1.885715e-01	ci left: 2.835296e-04	ci right 3.432380e-04	k: 431	n:1380000
Cons ci ratio: 3.364876e-03	ci left: 4.949944e-01	ci right 4.966635e-01	k: 684244	n:1380000
KS ci ratio: 1.409531e-01	ci left: 5.206591e-04	ci right 6.003019e-04	k: 772	n:1380000
ASAP3   1380000 perm   1129 sec   (1223 perm/sec)   p_kst 5.594203e-04   p_cons 4.958290e-01   p_joint 3.123188e-04

Joint ci ratio: 1.403191e-01	ci left: 5.217721e-04	ci right 6.011962e-04	k: 779	n:1390000
Cons ci ratio: 3.352660e-03	ci left: 4.950109e-01	ci right 4.966740e-01	k: 689221	n:1390000
KS ci ratio: 1.403191e-01	ci left: 5.217721e-04	ci right 6.011962e-04	k: 779	n:1390000
ASAP3   1390000 perm   1143 sec   (1216 perm/sec)   p_kst 5.604317e-04   p_cons 4.958424e-01   p_joint 5.604317e-04

Joint ci ratio: 1.860054e-01	ci left: 2.876488e-04	ci right 3.473074e-04	k: 443	n:1400000
Cons ci ratio: 3.340323e-03	ci left: 4.950650e-01	ci right 4.967221e-01	k: 694251	n:1400000
KS ci ratio: 1.394279e-01	ci left: 5.249382e-04	ci right 6.042945e-04	k: 789	n:1400000
ASAP3   1400000 perm   1157 sec   (1210 perm/sec)   p_kst 5.635714e-04   p_cons 4.958936e-01   p_joint 3.164286e-04

Joint ci ratio: 1.853802e-01	ci left: 2.876375e-04	ci right 3.470707e-04	k: 446	n:1410000
Cons ci ratio: 3.328343e-03	ci left: 4.950850e-01	ci right 4.967363e-01	k: 699234	n:1410000
KS ci ratio: 1.388142e-01	ci left: 5.260070e-04	ci right 6.051459e-04	k: 796	n:1410000
ASAP3   1410000 perm   1172 sec   (1203 perm/sec)   p_kst 5.645390e-04   p_cons 4.959106e-01   p_joint 3.163121e-04

Joint ci ratio: 1.383809e-01	ci left: 5.257017e-04	ci right 6.045275e-04	k: 801	n:1420000
Cons ci ratio: 3.316898e-03	ci left: 4.950435e-01	ci right 4.966889e-01	k: 704130	n:1420000
KS ci ratio: 1.383809e-01	ci left: 5.257017e-04	ci right 6.045275e-04	k: 801	n:1420000
ASAP3   1420000 perm   1186 sec   (1197 perm/sec)   p_kst 5.640845e-04   p_cons 4.958662e-01   p_joint 5.640845e-04

Joint ci ratio: 1.837431e-01	ci left: 2.889506e-04	ci right 3.480691e-04	k: 454	n:1430000
Cons ci ratio: 3.305362e-03	ci left: 4.950340e-01	ci right 4.966737e-01	k: 709071	n:1430000
KS ci ratio: 1.378661e-01	ci left: 5.260763e-04	ci right 6.046407e-04	k: 807	n:1430000
ASAP3   1430000 perm   1201 sec   (1191 perm/sec)   p_kst 5.643357e-04   p_cons 4.958538e-01   p_joint 3.174825e-04

Joint ci ratio: 1.835417e-01	ci left: 2.876065e-04	ci right 3.463783e-04	k: 455	n:1440000
Cons ci ratio: 3.293863e-03	ci left: 4.950372e-01	ci right 4.966711e-01	k: 714030	n:1440000
KS ci ratio: 1.376960e-01	ci left: 5.237640e-04	ci right 6.018786e-04	k: 809	n:1440000
ASAP3   1440000 perm   1216 sec   (1184 perm/sec)   p_kst 5.618056e-04   p_cons 4.958542e-01   p_joint 3.159722e-04

Joint ci ratio: 1.366869e-01	ci left: 5.281437e-04	ci right 6.062874e-04	k: 821	n:1450000
Cons ci ratio: 3.282782e-03	ci left: 4.949948e-01	ci right 4.966231e-01	k: 718923	n:1450000
KS ci ratio: 1.366869e-01	ci left: 5.281437e-04	ci right 6.062874e-04	k: 821	n:1450000
ASAP3   1450000 perm   1231 sec   (1178 perm/sec)   p_kst 5.662069e-04   p_cons 4.958090e-01   p_joint 5.662069e-04

Joint ci ratio: 1.363556e-01	ci left: 5.271724e-04	ci right 6.049680e-04	k: 825	n:1460000
Cons ci ratio: 3.271431e-03	ci left: 4.950113e-01	ci right 4.966340e-01	k: 723901	n:1460000
KS ci ratio: 1.363556e-01	ci left: 5.271724e-04	ci right 6.049680e-04	k: 825	n:1460000
ASAP3   1460000 perm   1246 sec   (1172 perm/sec)   p_kst 5.650685e-04   p_cons 4.958226e-01   p_joint 5.650685e-04

Joint ci ratio: 1.357814e-01	ci left: 5.281860e-04	ci right 6.057764e-04	k: 832	n:1470000
Cons ci ratio: 3.260374e-03	ci left: 4.950003e-01	ci right 4.966174e-01	k: 728839	n:1470000
KS ci ratio: 1.357814e-01	ci left: 5.281860e-04	ci right 6.057764e-04	k: 832	n:1470000
ASAP3   1470000 perm   1261 sec   (1165 perm/sec)   p_kst 5.659864e-04   p_cons 4.958088e-01   p_joint 5.659864e-04

Joint ci ratio: 1.798330e-01	ci left: 2.920874e-04	ci right 3.504377e-04	k: 474	n:1480000
Cons ci ratio: 3.249455e-03	ci left: 4.949854e-01	ci right 4.965971e-01	k: 733771	n:1480000
KS ci ratio: 1.352144e-01	ci left: 5.291866e-04	ci right 6.065733e-04	k: 839	n:1480000
ASAP3   1480000 perm   1276 sec   (1160 perm/sec)   p_kst 5.668919e-04   p_cons 4.957912e-01   p_joint 3.202703e-04

Joint ci ratio: 1.348937e-01	ci left: 5.282289e-04	ci right 6.052776e-04	k: 843	n:1490000
Cons ci ratio: 3.238358e-03	ci left: 4.950150e-01	ci right 4.966213e-01	k: 738769	n:1490000
KS ci ratio: 1.348937e-01	ci left: 5.282289e-04	ci right 6.052776e-04	k: 843	n:1490000
ASAP3   1490000 perm   1291 sec   (1154 perm/sec)   p_kst 5.657718e-04   p_cons 4.958181e-01   p_joint 5.657718e-04

Joint ci ratio: 1.346547e-01	ci left: 5.266399e-04	ci right 6.033098e-04	k: 846	n:1500000
Cons ci ratio: 3.227121e-03	ci left: 4.950836e-01	ci right 4.966845e-01	k: 743826	n:1500000
KS ci ratio: 1.346547e-01	ci left: 5.266399e-04	ci right 6.033098e-04	k: 846	n:1500000
ASAP3   1500000 perm   1307 sec   (1148 perm/sec)   p_kst 5.640000e-04   p_cons 4.958840e-01   p_joint 5.640000e-04

Joint ci ratio: 1.339448e-01	ci left: 5.289122e-04	ci right 6.054747e-04	k: 855	n:1510000
Cons ci ratio: 3.216220e-03	ci left: 4.951168e-01	ci right 4.967124e-01	k: 748831	n:1510000
KS ci ratio: 1.339448e-01	ci left: 5.289122e-04	ci right 6.054747e-04	k: 855	n:1510000
ASAP3   1510000 perm   1322 sec   (1142 perm/sec)   p_kst 5.662252e-04   p_cons 4.959146e-01   p_joint 5.662252e-04

Joint ci ratio: 1.334778e-01	ci left: 5.292479e-04	ci right 6.055707e-04	k: 861	n:1520000
Cons ci ratio: 3.205776e-03	ci left: 4.950956e-01	ci right 4.966860e-01	k: 753754	n:1520000
KS ci ratio: 1.334778e-01	ci left: 5.292479e-04	ci right 6.055707e-04	k: 861	n:1520000
ASAP3   1520000 perm   1337 sec   (1137 perm/sec)   p_kst 5.664474e-04   p_cons 4.958908e-01   p_joint 5.664474e-04

Joint ci ratio: 1.330157e-01	ci left: 5.295796e-04	ci right 6.056649e-04	k: 867	n:1530000
Cons ci ratio: 3.195240e-03	ci left: 4.951048e-01	ci right 4.966900e-01	k: 758723	n:1530000
KS ci ratio: 1.330157e-01	ci left: 5.295796e-04	ci right 6.056649e-04	k: 867	n:1530000
ASAP3   1530000 perm   1352 sec   (1131 perm/sec)   p_kst 5.666667e-04   p_cons 4.958974e-01   p_joint 5.666667e-04

Joint ci ratio: 1.327865e-01	ci left: 5.280240e-04	ci right 6.037448e-04	k: 870	n:1540000
Cons ci ratio: 3.184841e-03	ci left: 4.951087e-01	ci right 4.966887e-01	k: 763684	n:1540000
KS ci ratio: 1.327865e-01	ci left: 5.280240e-04	ci right 6.037448e-04	k: 870	n:1540000
ASAP3   1540000 perm   1368 sec   (1126 perm/sec)   p_kst 5.649351e-04   p_cons 4.958987e-01   p_joint 5.649351e-04

Joint ci ratio: 1.322561e-01	ci left: 5.289839e-04	ci right 6.045155e-04	k: 877	n:1550000
Cons ci ratio: 3.174714e-03	ci left: 4.950855e-01	ci right 4.966603e-01	k: 768603	n:1550000
KS ci ratio: 1.322561e-01	ci left: 5.289839e-04	ci right 6.045155e-04	k: 877	n:1550000
ASAP3   1550000 perm   1384 sec   (1120 perm/sec)   p_kst 5.658065e-04   p_cons 4.958729e-01   p_joint 5.658065e-04

Joint ci ratio: 1.318065e-01	ci left: 5.293121e-04	ci right 6.046135e-04	k: 883	n:1560000
Cons ci ratio: 3.164826e-03	ci left: 4.950401e-01	ci right 4.966099e-01	k: 773487	n:1560000
KS ci ratio: 1.318065e-01	ci left: 5.293121e-04	ci right 6.046135e-04	k: 883	n:1560000
ASAP3   1560000 perm   1400 sec   (1114 perm/sec)   p_kst 5.660256e-04   p_cons 4.958250e-01   p_joint 5.660256e-04

Joint ci ratio: 1.313614e-01	ci left: 5.296365e-04	ci right 6.047098e-04	k: 889	n:1570000
Cons ci ratio: 3.154591e-03	ci left: 4.950647e-01	ci right 4.966295e-01	k: 778480	n:1570000
KS ci ratio: 1.313614e-01	ci left: 5.296365e-04	ci right 6.047098e-04	k: 889	n:1570000
ASAP3   1570000 perm   1416 sec   (1109 perm/sec)   p_kst 5.662420e-04   p_cons 4.958471e-01   p_joint 5.662420e-04

Joint ci ratio: 1.307749e-01	ci left: 5.311817e-04	ci right 6.061117e-04	k: 897	n:1580000
Cons ci ratio: 3.144534e-03	ci left: 4.950764e-01	ci right 4.966363e-01	k: 783453	n:1580000
KS ci ratio: 1.307749e-01	ci left: 5.311817e-04	ci right 6.061117e-04	k: 897	n:1580000
ASAP3   1580000 perm   1431 sec   (1104 perm/sec)   p_kst 5.677215e-04   p_cons 4.958563e-01   p_joint 5.677215e-04

Joint ci ratio: 1.304123e-01	ci left: 5.308828e-04	ci right 6.055470e-04	k: 902	n:1590000
Cons ci ratio: 3.134688e-03	ci left: 4.950697e-01	ci right 4.966246e-01	k: 788397	n:1590000
KS ci ratio: 1.304123e-01	ci left: 5.308828e-04	ci right 6.055470e-04	k: 902	n:1590000
ASAP3   1590000 perm   1448 sec   (1098 perm/sec)   p_kst 5.672956e-04   p_cons 4.958472e-01   p_joint 5.672956e-04

Joint ci ratio: 1.302683e-01	ci left: 5.287740e-04	ci right 6.030531e-04	k: 904	n:1600000
Cons ci ratio: 3.124843e-03	ci left: 4.950775e-01	ci right 4.966275e-01	k: 793364	n:1600000
KS ci ratio: 1.302683e-01	ci left: 5.287740e-04	ci right 6.030531e-04	k: 904	n:1600000
ASAP3   1600000 perm   1464 sec   (1093 perm/sec)   p_kst 5.650000e-04   p_cons 4.958525e-01   p_joint 5.650000e-04

Joint ci ratio: 1.300530e-01	ci left: 5.272924e-04	ci right 6.012315e-04	k: 907	n:1610000
Cons ci ratio: 3.115145e-03	ci left: 4.950765e-01	ci right 4.966217e-01	k: 798317	n:1610000
KS ci ratio: 1.300530e-01	ci left: 5.272924e-04	ci right 6.012315e-04	k: 907	n:1610000
ASAP3   1610000 perm   1480 sec   (1088 perm/sec)   p_kst 5.633540e-04   p_cons 4.958491e-01   p_joint 5.633540e-04

Joint ci ratio: 1.297676e-01	ci left: 5.264263e-04	ci right 6.000695e-04	k: 911	n:1620000
Cons ci ratio: 3.105057e-03	ci left: 4.951526e-01	ci right 4.966931e-01	k: 803395	n:1620000
KS ci ratio: 1.297676e-01	ci left: 5.264263e-04	ci right 6.000695e-04	k: 911	n:1620000
ASAP3   1620000 perm   1496 sec   (1083 perm/sec)   p_kst 5.623457e-04   p_cons 4.959228e-01   p_joint 5.623457e-04

Joint ci ratio: 1.293428e-01	ci left: 5.267584e-04	ci right 6.001883e-04	k: 917	n:1630000
Cons ci ratio: 3.095530e-03	ci left: 4.951530e-01	ci right 4.966887e-01	k: 808351	n:1630000
KS ci ratio: 1.293428e-01	ci left: 5.267584e-04	ci right 6.001883e-04	k: 917	n:1630000
ASAP3   1630000 perm   1513 sec   (1078 perm/sec)   p_kst 5.625767e-04   p_cons 4.959209e-01   p_joint 5.625767e-04

Joint ci ratio: 1.289920e-01	ci left: 5.264967e-04	ci right 5.996759e-04	k: 922	n:1640000
Cons ci ratio: 3.086369e-03	ci left: 4.951083e-01	ci right 4.966393e-01	k: 813233	n:1640000
KS ci ratio: 1.289920e-01	ci left: 5.264967e-04	ci right 5.996759e-04	k: 922	n:1640000
ASAP3   1640000 perm   1529 sec   (1073 perm/sec)   p_kst 5.621951e-04   p_cons 4.958738e-01   p_joint 5.621951e-04

Joint ci ratio: 1.288526e-01	ci left: 5.244788e-04	ci right 5.972927e-04	k: 924	n:1650000
Cons ci ratio: 3.076785e-03	ci left: 4.951459e-01	ci right 4.966723e-01	k: 818250	n:1650000
KS ci ratio: 1.288526e-01	ci left: 5.244788e-04	ci right 5.972927e-04	k: 924	n:1650000
ASAP3   1650000 perm   1546 sec   (1067 perm/sec)   p_kst 5.600000e-04   p_cons 4.959091e-01   p_joint 5.600000e-04

Joint ci ratio: 1.284367e-01	ci left: 5.248175e-04	ci right 5.974253e-04	k: 930	n:1660000
Cons ci ratio: 3.067585e-03	ci left: 4.951349e-01	ci right 4.966567e-01	k: 823187	n:1660000
KS ci ratio: 1.284367e-01	ci left: 5.248175e-04	ci right 5.974253e-04	k: 930	n:1660000
ASAP3   1660000 perm   1563 sec   (1062 perm/sec)   p_kst 5.602410e-04   p_cons 4.958958e-01   p_joint 5.602410e-04

Joint ci ratio: 1.278203e-01	ci left: 5.268914e-04	ci right 5.994097e-04	k: 939	n:1670000
Cons ci ratio: 3.058094e-03	ci left: 4.951851e-01	ci right 4.967023e-01	k: 828226	n:1670000
KS ci ratio: 1.278203e-01	ci left: 5.268914e-04	ci right 5.994097e-04	k: 939	n:1670000
ASAP3   1670000 perm   1580 sec   (1057 perm/sec)   p_kst 5.622754e-04   p_cons 4.959437e-01   p_joint 5.622754e-04

Joint ci ratio: 1.273469e-01	ci left: 5.277888e-04	ci right 6.001414e-04	k: 946	n:1680000
Cons ci ratio: 3.048857e-03	ci left: 4.952074e-01	ci right 4.967200e-01	k: 833219	n:1680000
KS ci ratio: 1.273469e-01	ci left: 5.277888e-04	ci right 6.001414e-04	k: 946	n:1680000
ASAP3   1680000 perm   1597 sec   (1052 perm/sec)   p_kst 5.630952e-04   p_cons 4.959637e-01   p_joint 5.630952e-04

Joint ci ratio: 1.268788e-01	ci left: 5.286761e-04	ci right 6.008639e-04	k: 953	n:1690000
Cons ci ratio: 3.039922e-03	ci left: 4.951932e-01	ci right 4.967014e-01	k: 838151	n:1690000
KS ci ratio: 1.268788e-01	ci left: 5.286761e-04	ci right 6.008639e-04	k: 953	n:1690000
ASAP3   1690000 perm   1614 sec   (1047 perm/sec)   p_kst 5.639053e-04   p_cons 4.959473e-01   p_joint 5.639053e-04

Joint ci ratio: 1.265477e-01	ci left: 5.284142e-04	ci right 6.003637e-04	k: 958	n:1700000
Cons ci ratio: 3.030528e-03	ci left: 4.952681e-01	ci right 4.967719e-01	k: 843234	n:1700000
KS ci ratio: 1.265477e-01	ci left: 5.284142e-04	ci right 6.003637e-04	k: 958	n:1700000
ASAP3   1700000 perm   1631 sec   (1043 perm/sec)   p_kst 5.635294e-04   p_cons 4.960200e-01   p_joint 5.635294e-04

Joint ci ratio: 1.262846e-01	ci left: 5.275893e-04	ci right 5.992660e-04	k: 962	n:1710000
Cons ci ratio: 3.021746e-03	ci left: 4.952550e-01	ci right 4.967544e-01	k: 848168	n:1710000
KS ci ratio: 1.262846e-01	ci left: 5.275893e-04	ci right 5.992660e-04	k: 962	n:1710000
ASAP3   1710000 perm   1648 sec   (1038 perm/sec)   p_kst 5.625731e-04   p_cons 4.960047e-01   p_joint 5.625731e-04

Joint ci ratio: 1.663678e-01	ci left: 2.958307e-04	ci right 3.500610e-04	k: 554	n:1720000
Cons ci ratio: 3.013111e-03	ci left: 4.952304e-01	ci right 4.967254e-01	k: 853082	n:1720000
KS ci ratio: 1.257632e-01	ci left: 5.290265e-04	ci right 6.005796e-04	k: 970	n:1720000
ASAP3   1720000 perm   1665 sec   (1033 perm/sec)   p_kst 5.639535e-04   p_cons 4.959779e-01   p_joint 3.220930e-04

Joint ci ratio: 1.662183e-01	ci left: 2.946747e-04	ci right 3.486397e-04	k: 555	n:1730000
Cons ci ratio: 3.004493e-03	ci left: 4.952154e-01	ci right 4.967060e-01	k: 858012	n:1730000
KS ci ratio: 1.254407e-01	ci left: 5.287679e-04	ci right 6.000889e-04	k: 975	n:1730000
ASAP3   1730000 perm   1682 sec   (1028 perm/sec)   p_kst 5.635838e-04   p_cons 4.959607e-01   p_joint 3.208092e-04

Joint ci ratio: 1.651815e-01	ci left: 2.968373e-04	ci right 3.508256e-04	k: 562	n:1740000
Cons ci ratio: 2.995952e-03	ci left: 4.951999e-01	ci right 4.966863e-01	k: 862941	n:1740000
KS ci ratio: 1.249297e-01	ci left: 5.301827e-04	ci right 6.013817e-04	k: 983	n:1740000
ASAP3   1740000 perm   1699 sec   (1024 perm/sec)   p_kst 5.649425e-04   p_cons 4.959431e-01   p_joint 3.229885e-04

Joint ci ratio: 1.648890e-01	ci left: 2.962367e-04	ci right 3.500109e-04	k: 564	n:1750000
Cons ci ratio: 2.987249e-03	ci left: 4.952241e-01	ci right 4.967062e-01	k: 867939	n:1750000
KS ci ratio: 1.247397e-01	ci left: 5.288138e-04	ci right 5.997131e-04	k: 986	n:1750000
ASAP3   1750000 perm   1717 sec   (1019 perm/sec)   p_kst 5.634286e-04   p_cons 4.959651e-01   p_joint 3.222857e-04

Joint ci ratio: 1.244878e-01	ci left: 5.280111e-04	ci right 5.986492e-04	k: 990	n:1760000
Cons ci ratio: 2.978901e-03	ci left: 4.952008e-01	ci right 4.966787e-01	k: 872854	n:1760000
KS ci ratio: 1.244878e-01	ci left: 5.280111e-04	ci right 5.986492e-04	k: 990	n:1760000
ASAP3   1760000 perm   1734 sec   (1015 perm/sec)   p_kst 5.625000e-04   p_cons 4.959398e-01   p_joint 5.625000e-04

Joint ci ratio: 1.242374e-01	ci left: 5.272175e-04	ci right 5.975971e-04	k: 994	n:1770000
Cons ci ratio: 2.970563e-03	ci left: 4.951880e-01	ci right 4.966617e-01	k: 877787	n:1770000
KS ci ratio: 1.242374e-01	ci left: 5.272175e-04	ci right 5.975971e-04	k: 994	n:1770000
ASAP3   1770000 perm   1752 sec   (1010 perm/sec)   p_kst 5.615819e-04   p_cons 4.959249e-01   p_joint 5.615819e-04

Joint ci ratio: 1.238645e-01	ci left: 5.275218e-04	ci right 5.977152e-04	k: 1000	n:1780000
Cons ci ratio: 2.962294e-03	ci left: 4.951753e-01	ci right 4.966449e-01	k: 882720	n:1780000
KS ci ratio: 1.238645e-01	ci left: 5.275218e-04	ci right 5.977152e-04	k: 1000	n:1780000
ASAP3   1780000 perm   1770 sec   (1006 perm/sec)   p_kst 5.617978e-04   p_cons 4.959101e-01   p_joint 5.617978e-04

Joint ci ratio: 1.235563e-01	ci left: 5.272816e-04	ci right 5.972557e-04	k: 1005	n:1790000
Cons ci ratio: 2.954147e-03	ci left: 4.951539e-01	ci right 4.966193e-01	k: 887637	n:1790000
KS ci ratio: 1.235563e-01	ci left: 5.272816e-04	ci right 5.972557e-04	k: 1005	n:1790000
ASAP3   1790000 perm   1788 sec   (1001 perm/sec)   p_kst 5.614525e-04   p_cons 4.958866e-01   p_joint 5.614525e-04

Joint ci ratio: 1.231895e-01	ci left: 5.275828e-04	ci right 5.973737e-04	k: 1011	n:1800000
Cons ci ratio: 2.946172e-03	ci left: 4.951149e-01	ci right 4.965762e-01	k: 892522	n:1800000
KS ci ratio: 1.231895e-01	ci left: 5.275828e-04	ci right 5.973737e-04	k: 1011	n:1800000
ASAP3   1800000 perm   1805 sec   (997 perm/sec)   p_kst 5.616667e-04   p_cons 4.958456e-01   p_joint 5.616667e-04

Joint ci ratio: 1.230074e-01	ci left: 5.262743e-04	ci right 5.957818e-04	k: 1014	n:1810000
Cons ci ratio: 2.938387e-03	ci left: 4.950548e-01	ci right 4.965121e-01	k: 897368	n:1810000
KS ci ratio: 1.230074e-01	ci left: 5.262743e-04	ci right 5.957818e-04	k: 1014	n:1810000
ASAP3   1810000 perm   1823 sec   (993 perm/sec)   p_kst 5.602210e-04   p_cons 4.957834e-01   p_joint 5.602210e-04

Joint ci ratio: 1.623238e-01	ci left: 2.943282e-04	ci right 3.468437e-04	k: 582	n:1820000
Cons ci ratio: 2.930116e-03	ci left: 4.950887e-01	ci right 4.965421e-01	k: 902384	n:1820000
KS ci ratio: 1.226454e-01	ci left: 5.265781e-04	ci right 5.959062e-04	k: 1020	n:1820000
ASAP3   1820000 perm   1841 sec   (988 perm/sec)   p_kst 5.604396e-04   p_cons 4.958154e-01   p_joint 3.197802e-04

Joint ci ratio: 1.222271e-01	ci left: 5.274087e-04	ci right 5.965921e-04	k: 1027	n:1830000
Cons ci ratio: 2.921835e-03	ci left: 4.951360e-01	ci right 4.965853e-01	k: 907425	n:1830000
KS ci ratio: 1.222271e-01	ci left: 5.274087e-04	ci right 5.965921e-04	k: 1027	n:1830000
ASAP3   1830000 perm   1860 sec   (984 perm/sec)   p_kst 5.612022e-04   p_cons 4.958607e-01   p_joint 5.612022e-04

Joint ci ratio: 1.221085e-01	ci left: 5.255960e-04	ci right 5.944700e-04	k: 1029	n:1840000
Cons ci ratio: 2.913899e-03	ci left: 4.951355e-01	ci right 4.965809e-01	k: 912379	n:1840000
KS ci ratio: 1.221085e-01	ci left: 5.255960e-04	ci right 5.944700e-04	k: 1029	n:1840000
ASAP3   1840000 perm   1878 sec   (980 perm/sec)   p_kst 5.592391e-04   p_cons 4.958582e-01   p_joint 5.592391e-04

Joint ci ratio: 1.218721e-01	ci left: 5.248511e-04	ci right 5.934848e-04	k: 1033	n:1850000
Cons ci ratio: 2.906077e-03	ci left: 4.951263e-01	ci right 4.965678e-01	k: 917317	n:1850000
KS ci ratio: 1.218721e-01	ci left: 5.248511e-04	ci right 5.934848e-04	k: 1033	n:1850000
ASAP3   1850000 perm   1896 sec   (976 perm/sec)   p_kst 5.583784e-04   p_cons 4.958470e-01   p_joint 5.583784e-04

Joint ci ratio: 1.214616e-01	ci left: 5.256783e-04	ci right 5.941719e-04	k: 1040	n:1860000
Cons ci ratio: 2.898415e-03	ci left: 4.951006e-01	ci right 4.965382e-01	k: 922224	n:1860000
KS ci ratio: 1.214616e-01	ci left: 5.256783e-04	ci right 5.941719e-04	k: 1040	n:1860000
ASAP3   1860000 perm   1914 sec   (972 perm/sec)   p_kst 5.591398e-04   p_cons 4.958194e-01   p_joint 5.591398e-04

Joint ci ratio: 1.211131e-01	ci left: 5.259784e-04	ci right 5.943003e-04	k: 1046	n:1870000
Cons ci ratio: 2.890900e-03	ci left: 4.950601e-01	ci right 4.964939e-01	k: 927103	n:1870000
KS ci ratio: 1.211131e-01	ci left: 5.259784e-04	ci right 5.943003e-04	k: 1046	n:1870000
ASAP3   1870000 perm   1933 sec   (967 perm/sec)   p_kst 5.593583e-04   p_cons 4.957770e-01   p_joint 5.593583e-04

Joint ci ratio: 1.205957e-01	ci left: 5.278232e-04	ci right 5.960710e-04	k: 1055	n:1880000
Cons ci ratio: 2.883308e-03	ci left: 4.950436e-01	ci right 4.964735e-01	k: 932026	n:1880000
KS ci ratio: 1.205957e-01	ci left: 5.278232e-04	ci right 5.960710e-04	k: 1055	n:1880000
ASAP3   1880000 perm   1951 sec   (963 perm/sec)   p_kst 5.611702e-04   p_cons 4.957585e-01   p_joint 5.611702e-04

Joint ci ratio: 1.203680e-01	ci left: 5.270831e-04	ci right 5.950974e-04	k: 1059	n:1890000
Cons ci ratio: 2.875513e-03	ci left: 4.950726e-01	ci right 4.964988e-01	k: 937035	n:1890000
KS ci ratio: 1.203680e-01	ci left: 5.270831e-04	ci right 5.950974e-04	k: 1059	n:1890000
ASAP3   1890000 perm   1970 sec   (959 perm/sec)   p_kst 5.603175e-04   p_cons 4.957857e-01   p_joint 5.603175e-04

Joint ci ratio: 1.200852e-01	ci left: 5.268614e-04	ci right 5.946760e-04	k: 1064	n:1900000
Cons ci ratio: 2.868183e-03	ci left: 4.950314e-01	ci right 4.964538e-01	k: 941911	n:1900000
KS ci ratio: 1.200852e-01	ci left: 5.268614e-04	ci right 5.946760e-04	k: 1064	n:1900000
ASAP3   1900000 perm   1989 sec   (955 perm/sec)   p_kst 5.600000e-04   p_cons 4.957426e-01   p_joint 5.600000e-04

Joint ci ratio: 1.198043e-01	ci left: 5.266422e-04	ci right 5.942588e-04	k: 1069	n:1910000
Cons ci ratio: 2.860771e-03	ci left: 4.950148e-01	ci right 4.964334e-01	k: 946833	n:1910000
KS ci ratio: 1.198043e-01	ci left: 5.266422e-04	ci right 5.942588e-04	k: 1069	n:1910000
ASAP3   1910000 perm   2008 sec   (951 perm/sec)   p_kst 5.596859e-04   p_cons 4.957241e-01   p_joint 5.596859e-04

Joint ci ratio: 1.579159e-01	ci left: 2.954976e-04	ci right 3.466544e-04	k: 615	n:1920000
Cons ci ratio: 2.853199e-03	ci left: 4.950363e-01	ci right 4.964512e-01	k: 951828	n:1920000
KS ci ratio: 1.193035e-01	ci left: 5.284466e-04	ci right 5.959913e-04	k: 1078	n:1920000
ASAP3   1920000 perm   2027 sec   (947 perm/sec)   p_kst 5.614583e-04   p_cons 4.957437e-01   p_joint 3.203125e-04

Joint ci ratio: 1.577880e-01	ci left: 2.944642e-04	ci right 3.453968e-04	k: 616	n:1930000
Cons ci ratio: 2.845858e-03	ci left: 4.950275e-01	ci right 4.964388e-01	k: 956765	n:1930000
KS ci ratio: 1.191932e-01	ci left: 5.267139e-04	ci right 5.939704e-04	k: 1080	n:1930000
ASAP3   1930000 perm   2046 sec   (943 perm/sec)   p_kst 5.595855e-04   p_cons 4.957332e-01   p_joint 3.191710e-04

Joint ci ratio: 1.576604e-01	ci left: 2.934414e-04	ci right 3.441522e-04	k: 617	n:1940000
Cons ci ratio: 2.838509e-03	ci left: 4.950302e-01	ci right 4.964378e-01	k: 961724	n:1940000
KS ci ratio: 1.189733e-01	ci left: 5.259993e-04	ci right 5.930320e-04	k: 1084	n:1940000
ASAP3   1940000 perm   2065 sec   (939 perm/sec)   p_kst 5.587629e-04   p_cons 4.957340e-01   p_joint 3.180412e-04

Joint ci ratio: 1.575331e-01	ci left: 2.924292e-04	ci right 3.429204e-04	k: 618	n:1950000
Cons ci ratio: 2.831252e-03	ci left: 4.950267e-01	ci right 4.964307e-01	k: 966671	n:1950000
KS ci ratio: 1.187547e-01	ci left: 5.252921e-04	ci right 5.921031e-04	k: 1088	n:1950000
ASAP3   1950000 perm   2084 sec   (936 perm/sec)   p_kst 5.579487e-04   p_cons 4.957287e-01   p_joint 3.169231e-04

Joint ci ratio: 1.571527e-01	ci left: 2.924075e-04	ci right 3.427616e-04	k: 621	n:1960000
Cons ci ratio: 2.824116e-03	ci left: 4.950115e-01	ci right 4.964120e-01	k: 971595	n:1960000
KS ci ratio: 1.184289e-01	ci left: 5.255825e-04	ci right 5.922341e-04	k: 1094	n:1960000
ASAP3   1960000 perm   2104 sec   (932 perm/sec)   p_kst 5.581633e-04   p_cons 4.957117e-01   p_joint 3.168367e-04

Joint ci ratio: 1.178916e-01	ci left: 5.278407e-04	ci right 5.944539e-04	k: 1104	n:1970000
Cons ci ratio: 2.816888e-03	ci left: 4.950224e-01	ci right 4.964193e-01	k: 976570	n:1970000
KS ci ratio: 1.178916e-01	ci left: 5.278407e-04	ci right 5.944539e-04	k: 1104	n:1970000
ASAP3   1970000 perm   2123 sec   (928 perm/sec)   p_kst 5.604061e-04   p_cons 4.957208e-01   p_joint 5.604061e-04

Joint ci ratio: 1.175729e-01	ci left: 5.281159e-04	ci right 5.945711e-04	k: 1110	n:1980000
Cons ci ratio: 2.809857e-03	ci left: 4.950079e-01	ci right 4.964012e-01	k: 981495	n:1980000
KS ci ratio: 1.175729e-01	ci left: 5.281159e-04	ci right 5.945711e-04	k: 1110	n:1980000
ASAP3   1980000 perm   2143 sec   (924 perm/sec)   p_kst 5.606061e-04   p_cons 4.957045e-01   p_joint 5.606061e-04

Joint ci ratio: 1.169428e-01	ci left: 5.313154e-04	ci right 5.977902e-04	k: 1122	n:1990000
Cons ci ratio: 2.802777e-03	ci left: 4.950116e-01	ci right 4.964015e-01	k: 986456	n:1990000
KS ci ratio: 1.169428e-01	ci left: 5.313154e-04	ci right 5.977902e-04	k: 1122	n:1990000
ASAP3   1990000 perm   2163 sec   (920 perm/sec)   p_kst 5.638191e-04   p_cons 4.957065e-01   p_joint 5.638191e-04

Joint ci ratio: 1.165284e-01	ci left: 5.325421e-04	ci right 5.989180e-04	k: 1130	n:2000000
Cons ci ratio: 2.795633e-03	ci left: 4.950363e-01	ci right 4.964227e-01	k: 991459	n:2000000
KS ci ratio: 1.165284e-01	ci left: 5.325421e-04	ci right 5.989180e-04	k: 1130	n:2000000
ASAP3   2000000 perm   2183 sec   (916 perm/sec)   p_kst 5.650000e-04   p_cons 4.957295e-01   p_joint 5.650000e-04

Joint ci ratio: 1.160165e-01	ci left: 5.347231e-04	ci right 6.010580e-04	k: 1140	n:2010000
Cons ci ratio: 2.788596e-03	ci left: 4.950513e-01	ci right 4.964342e-01	k: 996443	n:2010000
KS ci ratio: 1.160165e-01	ci left: 5.347231e-04	ci right 6.010580e-04	k: 1140	n:2010000
ASAP3   2010000 perm   2203 sec   (913 perm/sec)   p_kst 5.671642e-04   p_cons 4.957428e-01   p_joint 5.671642e-04

Joint ci ratio: 1.158137e-01	ci left: 5.339987e-04	ci right 6.001200e-04	k: 1144	n:2020000
Cons ci ratio: 2.781518e-03	ci left: 4.950830e-01	ci right 4.964625e-01	k: 1001461	n:2020000
KS ci ratio: 1.158137e-01	ci left: 5.339987e-04	ci right 6.001200e-04	k: 1144	n:2020000
ASAP3   2020000 perm   2222 sec   (909 perm/sec)   p_kst 5.663366e-04   p_cons 4.957728e-01   p_joint 5.663366e-04

Joint ci ratio: 1.155617e-01	ci left: 5.337599e-04	ci right 5.996981e-04	k: 1149	n:2030000
Cons ci ratio: 2.774701e-03	ci left: 4.950770e-01	ci right 4.964531e-01	k: 1006403	n:2030000
KS ci ratio: 1.155617e-01	ci left: 5.337599e-04	ci right 5.996981e-04	k: 1149	n:2030000
ASAP3   2030000 perm   2242 sec   (905 perm/sec)   p_kst 5.660099e-04   p_cons 4.957650e-01   p_joint 5.660099e-04

Joint ci ratio: 1.153613e-01	ci left: 5.330476e-04	ci right 5.987758e-04	k: 1153	n:2040000
Cons ci ratio: 2.767607e-03	ci left: 4.951303e-01	ci right 4.965030e-01	k: 1011466	n:2040000
KS ci ratio: 1.153613e-01	ci left: 5.330476e-04	ci right 5.987758e-04	k: 1153	n:2040000
ASAP3   2040000 perm   2262 sec   (902 perm/sec)   p_kst 5.651961e-04   p_cons 4.958167e-01   p_joint 5.651961e-04

Joint ci ratio: 1.149634e-01	ci left: 5.342374e-04	ci right 5.998697e-04	k: 1161	n:2050000
Cons ci ratio: 2.761010e-03	ci left: 4.951027e-01	ci right 4.964720e-01	k: 1016364	n:2050000
KS ci ratio: 1.149634e-01	ci left: 5.342374e-04	ci right 5.998697e-04	k: 1161	n:2050000
ASAP3   2050000 perm   2282 sec   (898 perm/sec)   p_kst 5.663415e-04   p_cons 4.957873e-01   p_joint 5.663415e-04

Joint ci ratio: 1.148154e-01	ci left: 5.330585e-04	ci right 5.984559e-04	k: 1164	n:2060000
Cons ci ratio: 2.754442e-03	ci left: 4.950787e-01	ci right 4.964447e-01	k: 1021269	n:2060000
KS ci ratio: 1.148154e-01	ci left: 5.330585e-04	ci right 5.984559e-04	k: 1164	n:2060000
ASAP3   2060000 perm   2302 sec   (895 perm/sec)   p_kst 5.650485e-04   p_cons 4.957617e-01   p_joint 5.650485e-04

Joint ci ratio: 1.144231e-01	ci left: 5.342373e-04	ci right 5.995403e-04	k: 1172	n:2070000
Cons ci ratio: 2.747880e-03	ci left: 4.950621e-01	ci right 4.964248e-01	k: 1026189	n:2070000
KS ci ratio: 1.144231e-01	ci left: 5.342373e-04	ci right 5.995403e-04	k: 1172	n:2070000
ASAP3   2070000 perm   2323 sec   (891 perm/sec)   p_kst 5.661836e-04   p_cons 4.957435e-01   p_joint 5.661836e-04

Joint ci ratio: 1.517586e-01	ci left: 2.963366e-04	ci right 3.454567e-04	k: 666	n:2080000
Cons ci ratio: 2.741458e-03	ci left: 4.950289e-01	ci right 4.963884e-01	k: 1031074	n:2080000
KS ci ratio: 1.142286e-01	ci left: 5.335369e-04	ci right 5.986359e-04	k: 1176	n:2080000
ASAP3   2080000 perm   2343 sec   (888 perm/sec)   p_kst 5.653846e-04   p_cons 4.957087e-01   p_joint 3.201923e-04

Joint ci ratio: 1.515317e-01	ci left: 2.958394e-04	ci right 3.447971e-04	k: 668	n:2090000
Cons ci ratio: 2.735143e-03	ci left: 4.949846e-01	ci right 4.963408e-01	k: 1035935	n:2090000
KS ci ratio: 1.138904e-01	ci left: 5.342378e-04	ci right 5.992164e-04	k: 1183	n:2090000
ASAP3   2090000 perm   2364 sec   (884 perm/sec)   p_kst 5.660287e-04   p_cons 4.956627e-01   p_joint 3.196172e-04

Joint ci ratio: 1.514186e-01	ci left: 2.948887e-04	ci right 3.436494e-04	k: 669	n:2100000
Cons ci ratio: 2.728708e-03	ci left: 4.949707e-01	ci right 4.963236e-01	k: 1040859	n:2100000
KS ci ratio: 1.136985e-01	ci left: 5.335444e-04	ci right 5.983220e-04	k: 1187	n:2100000
ASAP3   2100000 perm   2384 sec   (881 perm/sec)   p_kst 5.652381e-04   p_cons 4.956471e-01   p_joint 3.185714e-04

Joint ci ratio: 1.134125e-01	ci left: 5.337786e-04	ci right 5.984106e-04	k: 1193	n:2110000
Cons ci ratio: 2.722380e-03	ci left: 4.949455e-01	ci right 4.962952e-01	k: 1045759	n:2110000
KS ci ratio: 1.134125e-01	ci left: 5.337786e-04	ci right 5.984106e-04	k: 1193	n:2110000
ASAP3   2110000 perm   2405 sec   (877 perm/sec)   p_kst 5.654028e-04   p_cons 4.956204e-01   p_joint 5.654028e-04

Joint ci ratio: 1.130815e-01	ci left: 5.344691e-04	ci right 5.989833e-04	k: 1200	n:2120000
Cons ci ratio: 2.715832e-03	ci left: 4.949692e-01	ci right 4.963157e-01	k: 1050762	n:2120000
KS ci ratio: 1.130815e-01	ci left: 5.344691e-04	ci right 5.989833e-04	k: 1200	n:2120000
ASAP3   2120000 perm   2426 sec   (874 perm/sec)   p_kst 5.660377e-04   p_cons 4.956425e-01   p_joint 5.660377e-04

Joint ci ratio: 1.128937e-01	ci left: 5.337847e-04	ci right 5.981022e-04	k: 1204	n:2130000
Cons ci ratio: 2.709503e-03	ci left: 4.949607e-01	ci right 4.963041e-01	k: 1055697	n:2130000
KS ci ratio: 1.128937e-01	ci left: 5.337847e-04	ci right 5.981022e-04	k: 1204	n:2130000
ASAP3   2130000 perm   2447 sec   (871 perm/sec)   p_kst 5.652582e-04   p_cons 4.956324e-01   p_joint 5.652582e-04

Joint ci ratio: 1.126136e-01	ci left: 5.340151e-04	ci right 5.981901e-04	k: 1210	n:2140000
Cons ci ratio: 2.703348e-03	ci left: 4.949285e-01	ci right 4.962687e-01	k: 1060581	n:2140000
KS ci ratio: 1.126136e-01	ci left: 5.340151e-04	ci right 5.981901e-04	k: 1210	n:2140000
ASAP3   2140000 perm   2467 sec   (867 perm/sec)   p_kst 5.654206e-04   p_cons 4.955986e-01   p_joint 5.654206e-04

Joint ci ratio: 1.123357e-01	ci left: 5.342435e-04	ci right 5.982770e-04	k: 1216	n:2150000
Cons ci ratio: 2.696901e-03	ci left: 4.949584e-01	ci right 4.962955e-01	k: 1065598	n:2150000
KS ci ratio: 1.123357e-01	ci left: 5.342435e-04	ci right 5.982770e-04	k: 1216	n:2150000
ASAP3   2150000 perm   2488 sec   (864 perm/sec)   p_kst 5.655814e-04   p_cons 4.956270e-01   p_joint 5.655814e-04

Joint ci ratio: 1.120140e-01	ci left: 5.349200e-04	ci right 5.988388e-04	k: 1223	n:2160000
Cons ci ratio: 2.690674e-03	ci left: 4.949557e-01	ci right 4.962897e-01	k: 1070545	n:2160000
KS ci ratio: 1.120140e-01	ci left: 5.349200e-04	ci right 5.988388e-04	k: 1223	n:2160000
ASAP3   2160000 perm   2510 sec   (861 perm/sec)   p_kst 5.662037e-04   p_cons 4.956227e-01   p_joint 5.662037e-04

Joint ci ratio: 1.117859e-01	ci left: 5.346945e-04	ci right 5.984478e-04	k: 1228	n:2170000
Cons ci ratio: 2.684475e-03	ci left: 4.949557e-01	ci right 4.962867e-01	k: 1075498	n:2170000
KS ci ratio: 1.117859e-01	ci left: 5.346945e-04	ci right 5.984478e-04	k: 1228	n:2170000
ASAP3   2170000 perm   2531 sec   (857 perm/sec)   p_kst 5.658986e-04   p_cons 4.956212e-01   p_joint 5.658986e-04

Joint ci ratio: 1.114689e-01	ci left: 5.353632e-04	ci right 5.990032e-04	k: 1235	n:2180000
Cons ci ratio: 2.678346e-03	ci left: 4.949508e-01	ci right 4.962786e-01	k: 1080440	n:2180000
KS ci ratio: 1.114689e-01	ci left: 5.353632e-04	ci right 5.990032e-04	k: 1235	n:2180000
ASAP3   2180000 perm   2553 sec   (854 perm/sec)   p_kst 5.665138e-04   p_cons 4.956147e-01   p_joint 5.665138e-04

Joint ci ratio: 1.112441e-01	ci left: 5.351381e-04	ci right 5.986147e-04	k: 1240	n:2190000
Cons ci ratio: 2.672410e-03	ci left: 4.949175e-01	ci right 4.962423e-01	k: 1085320	n:2190000
KS ci ratio: 1.112441e-01	ci left: 5.351381e-04	ci right 5.986147e-04	k: 1240	n:2190000
ASAP3   2190000 perm   2574 sec   (851 perm/sec)   p_kst 5.662100e-04   p_cons 4.955799e-01   p_joint 5.662100e-04

Joint ci ratio: 1.106658e-01	ci left: 5.384508e-04	ci right 6.019667e-04	k: 1253	n:2200000
Cons ci ratio: 2.666377e-03	ci left: 4.949100e-01	ci right 4.962318e-01	k: 1090256	n:2200000
KS ci ratio: 1.106658e-01	ci left: 5.384508e-04	ci right 6.019667e-04	k: 1253	n:2200000
ASAP3   2200000 perm   2596 sec   (848 perm/sec)   p_kst 5.695455e-04   p_cons 4.955709e-01   p_joint 5.695455e-04

Joint ci ratio: 1.100964e-01	ci left: 5.417344e-04	ci right 6.052875e-04	k: 1266	n:2210000
Cons ci ratio: 2.660344e-03	ci left: 4.949103e-01	ci right 4.962291e-01	k: 1095209	n:2210000
KS ci ratio: 1.100964e-01	ci left: 5.417344e-04	ci right 6.052875e-04	k: 1266	n:2210000
ASAP3   2210000 perm   2618 sec   (844 perm/sec)   p_kst 5.728507e-04   p_cons 4.955697e-01   p_joint 5.728507e-04

Joint ci ratio: 1.098798e-01	ci left: 5.414844e-04	ci right 6.048752e-04	k: 1271	n:2220000
Cons ci ratio: 2.654398e-03	ci left: 4.949020e-01	ci right 4.962178e-01	k: 1100143	n:2220000
KS ci ratio: 1.098798e-01	ci left: 5.414844e-04	ci right 6.048752e-04	k: 1271	n:2220000
ASAP3   2220000 perm   2640 sec   (841 perm/sec)   p_kst 5.725225e-04   p_cons 4.955599e-01   p_joint 5.725225e-04

Joint ci ratio: 1.096645e-01	ci left: 5.412369e-04	ci right 6.044664e-04	k: 1276	n:2230000
Cons ci ratio: 2.648363e-03	ci left: 4.949180e-01	ci right 4.962309e-01	k: 1105131	n:2230000
KS ci ratio: 1.096645e-01	ci left: 5.412369e-04	ci right 6.044664e-04	k: 1276	n:2230000
ASAP3   2230000 perm   2661 sec   (838 perm/sec)   p_kst 5.721973e-04   p_cons 4.955744e-01   p_joint 5.721973e-04

Joint ci ratio: 1.095360e-01	ci left: 5.401232e-04	ci right 6.031439e-04	k: 1279	n:2240000
Cons ci ratio: 2.642453e-03	ci left: 4.949178e-01	ci right 4.962277e-01	k: 1110083	n:2240000
KS ci ratio: 1.095360e-01	ci left: 5.401232e-04	ci right 6.031439e-04	k: 1279	n:2240000
ASAP3   2240000 perm   2683 sec   (835 perm/sec)   p_kst 5.709821e-04   p_cons 4.955728e-01   p_joint 5.709821e-04

Joint ci ratio: 1.093227e-01	ci left: 5.398840e-04	ci right 6.027463e-04	k: 1284	n:2250000
Cons ci ratio: 2.636583e-03	ci left: 4.949176e-01	ci right 4.962246e-01	k: 1115035	n:2250000
KS ci ratio: 1.093227e-01	ci left: 5.398840e-04	ci right 6.027463e-04	k: 1284	n:2250000
ASAP3   2250000 perm   2705 sec   (832 perm/sec)   p_kst 5.706667e-04   p_cons 4.955711e-01   p_joint 5.706667e-04

Joint ci ratio: 1.092378e-01	ci left: 5.383559e-04	ci right 6.009884e-04	k: 1286	n:2260000
Cons ci ratio: 2.630687e-03	ci left: 4.949298e-01	ci right 4.962339e-01	k: 1120015	n:2260000
KS ci ratio: 1.092378e-01	ci left: 5.383559e-04	ci right 6.009884e-04	k: 1286	n:2260000
ASAP3   2260000 perm   2727 sec   (829 perm/sec)   p_kst 5.690265e-04   p_cons 4.955819e-01   p_joint 5.690265e-04

Joint ci ratio: 1.090263e-01	ci left: 5.381268e-04	ci right 6.006037e-04	k: 1291	n:2270000
Cons ci ratio: 2.624830e-03	ci left: 4.949419e-01	ci right 4.962431e-01	k: 1124995	n:2270000
KS ci ratio: 1.090263e-01	ci left: 5.381268e-04	ci right 6.006037e-04	k: 1291	n:2270000
ASAP3   2270000 perm   2749 sec   (826 perm/sec)   p_kst 5.687225e-04   p_cons 4.955925e-01   p_joint 5.687225e-04

Joint ci ratio: 1.089842e-01	ci left: 5.361932e-04	ci right 5.984200e-04	k: 1292	n:2280000
Cons ci ratio: 2.619052e-03	ci left: 4.949464e-01	ci right 4.962448e-01	k: 1129958	n:2280000
KS ci ratio: 1.089842e-01	ci left: 5.361932e-04	ci right 5.984200e-04	k: 1292	n:2280000
ASAP3   2280000 perm   2771 sec   (823 perm/sec)   p_kst 5.666667e-04   p_cons 4.955956e-01   p_joint 5.666667e-04

Joint ci ratio: 1.085651e-01	ci left: 5.380998e-04	ci right 6.002924e-04	k: 1302	n:2290000
Cons ci ratio: 2.613619e-03	ci left: 4.948920e-01	ci right 4.961875e-01	k: 1134786	n:2290000
KS ci ratio: 1.085651e-01	ci left: 5.380998e-04	ci right 6.002924e-04	k: 1302	n:2290000
ASAP3   2290000 perm   2794 sec   (820 perm/sec)   p_kst 5.685590e-04   p_cons 4.955397e-01   p_joint 5.685590e-04

Joint ci ratio: 1.081920e-01	ci left: 5.395672e-04	ci right 6.017014e-04	k: 1311	n:2300000
Cons ci ratio: 2.607946e-03	ci left: 4.948906e-01	ci right 4.961833e-01	k: 1139735	n:2300000
KS ci ratio: 1.081920e-01	ci left: 5.395672e-04	ci right 6.017014e-04	k: 1311	n:2300000
ASAP3   2300000 perm   2816 sec   (817 perm/sec)   p_kst 5.700000e-04   p_cons 4.955370e-01   p_joint 5.700000e-04

Joint ci ratio: 1.080686e-01	ci left: 5.384950e-04	ci right 6.004305e-04	k: 1314	n:2310000
Cons ci ratio: 2.602266e-03	ci left: 4.948975e-01	ci right 4.961874e-01	k: 1144703	n:2310000
KS ci ratio: 1.080686e-01	ci left: 5.384950e-04	ci right 6.004305e-04	k: 1314	n:2310000
ASAP3   2310000 perm   2838 sec   (814 perm/sec)   p_kst 5.688312e-04   p_cons 4.955424e-01   p_joint 5.688312e-04

Joint ci ratio: 1.078637e-01	ci left: 5.382709e-04	ci right 6.000558e-04	k: 1319	n:2320000
Cons ci ratio: 2.596729e-03	ci left: 4.948840e-01	ci right 4.961712e-01	k: 1149624	n:2320000
KS ci ratio: 1.078637e-01	ci left: 5.382709e-04	ci right 6.000558e-04	k: 1319	n:2320000
ASAP3   2320000 perm   2861 sec   (811 perm/sec)   p_kst 5.685345e-04   p_cons 4.955276e-01   p_joint 5.685345e-04

Joint ci ratio: 1.077822e-01	ci left: 5.367959e-04	ci right 5.983620e-04	k: 1321	n:2330000
Cons ci ratio: 2.591311e-03	ci left: 4.948544e-01	ci right 4.961388e-01	k: 1154507	n:2330000
KS ci ratio: 1.077822e-01	ci left: 5.367959e-04	ci right 5.983620e-04	k: 1321	n:2330000
ASAP3   2330000 perm   2883 sec   (808 perm/sec)   p_kst 5.669528e-04   p_cons 4.954966e-01   p_joint 5.669528e-04

Joint ci ratio: 1.075384e-01	ci left: 5.369970e-04	ci right 5.984380e-04	k: 1327	n:2340000
Cons ci ratio: 2.586022e-03	ci left: 4.948066e-01	ci right 4.960883e-01	k: 1159347	n:2340000
KS ci ratio: 1.075384e-01	ci left: 5.369970e-04	ci right 5.984380e-04	k: 1327	n:2340000
ASAP3   2340000 perm   2906 sec   (805 perm/sec)   p_kst 5.670940e-04   p_cons 4.954474e-01   p_joint 5.670940e-04

Joint ci ratio: 1.073366e-01	ci left: 5.367823e-04	ci right 5.980763e-04	k: 1332	n:2350000
Cons ci ratio: 2.580577e-03	ci left: 4.947959e-01	ci right 4.960748e-01	k: 1164273	n:2350000
KS ci ratio: 1.073366e-01	ci left: 5.367823e-04	ci right 5.980763e-04	k: 1332	n:2350000
ASAP3   2350000 perm   2929 sec   (802 perm/sec)   p_kst 5.668085e-04   p_cons 4.954353e-01   p_joint 5.668085e-04

Joint ci ratio: 1.071759e-01	ci left: 5.361573e-04	ci right 5.972824e-04	k: 1336	n:2360000
Cons ci ratio: 2.575235e-03	ci left: 4.947717e-01	ci right 4.960478e-01	k: 1169167	n:2360000
KS ci ratio: 1.071759e-01	ci left: 5.361573e-04	ci right 5.972824e-04	k: 1336	n:2360000
ASAP3   2360000 perm   2952 sec   (800 perm/sec)   p_kst 5.661017e-04   p_cons 4.954097e-01   p_joint 5.661017e-04

Joint ci ratio: 1.069761e-01	ci left: 5.359482e-04	ci right 5.969284e-04	k: 1341	n:2370000
Cons ci ratio: 2.569806e-03	ci left: 4.947713e-01	ci right 4.960448e-01	k: 1174117	n:2370000
KS ci ratio: 1.069761e-01	ci left: 5.359482e-04	ci right 5.969284e-04	k: 1341	n:2370000
ASAP3   2370000 perm   2975 sec   (797 perm/sec)   p_kst 5.658228e-04   p_cons 4.954080e-01   p_joint 5.658228e-04

Joint ci ratio: 1.068171e-01	ci left: 5.353321e-04	ci right 5.961459e-04	k: 1345	n:2380000
Cons ci ratio: 2.564244e-03	ci left: 4.948032e-01	ci right 4.960741e-01	k: 1179144	n:2380000
KS ci ratio: 1.068171e-01	ci left: 5.353321e-04	ci right 5.961459e-04	k: 1345	n:2380000
ASAP3   2380000 perm   2998 sec   (794 perm/sec)   p_kst 5.651261e-04   p_cons 4.954387e-01   p_joint 5.651261e-04

Joint ci ratio: 1.066983e-01	ci left: 5.343139e-04	ci right 5.949403e-04	k: 1348	n:2390000
Cons ci ratio: 2.558847e-03	ci left: 4.948099e-01	ci right 4.960780e-01	k: 1184111	n:2390000
KS ci ratio: 1.066983e-01	ci left: 5.343139e-04	ci right 5.949403e-04	k: 1348	n:2390000
ASAP3   2390000 perm   3021 sec   (791 perm/sec)   p_kst 5.640167e-04   p_cons 4.954439e-01   p_joint 5.640167e-04

Joint ci ratio: 1.065405e-01	ci left: 5.337098e-04	ci right 5.941725e-04	k: 1352	n:2400000
Cons ci ratio: 2.553479e-03	ci left: 4.948172e-01	ci right 4.960828e-01	k: 1189080	n:2400000
KS ci ratio: 1.065405e-01	ci left: 5.337098e-04	ci right 5.941725e-04	k: 1352	n:2400000
ASAP3   2400000 perm   3044 sec   (788 perm/sec)   p_kst 5.633333e-04   p_cons 4.954500e-01   p_joint 5.633333e-04

Joint ci ratio: 1.061488e-01	ci left: 5.355343e-04	ci right 5.959668e-04	k: 1362	n:2410000
Cons ci ratio: 2.548196e-03	ci left: 4.948146e-01	ci right 4.960775e-01	k: 1194025	n:2410000
KS ci ratio: 1.061488e-01	ci left: 5.355343e-04	ci right 5.959668e-04	k: 1362	n:2410000
ASAP3   2410000 perm   3067 sec   (786 perm/sec)   p_kst 5.651452e-04   p_cons 4.954461e-01   p_joint 5.651452e-04

Joint ci ratio: 1.057615e-01	ci left: 5.373441e-04	ci right 5.977457e-04	k: 1372	n:2420000
Cons ci ratio: 2.542980e-03	ci left: 4.948054e-01	ci right 4.960657e-01	k: 1198954	n:2420000
KS ci ratio: 1.057615e-01	ci left: 5.373441e-04	ci right 5.977457e-04	k: 1372	n:2420000
ASAP3   2420000 perm   3090 sec   (783 perm/sec)   p_kst 5.669421e-04   p_cons 4.954355e-01   p_joint 5.669421e-04

Joint ci ratio: 1.055311e-01	ci left: 5.375367e-04	ci right 5.978202e-04	k: 1378	n:2430000
Cons ci ratio: 2.537724e-03	ci left: 4.948103e-01	ci right 4.960679e-01	k: 1203917	n:2430000
KS ci ratio: 1.055311e-01	ci left: 5.375367e-04	ci right 5.978202e-04	k: 1378	n:2430000
ASAP3   2430000 perm   3114 sec   (780 perm/sec)   p_kst 5.670782e-04   p_cons 4.954391e-01   p_joint 5.670782e-04

Joint ci ratio: 1.053784e-01	ci left: 5.369298e-04	ci right 5.970527e-04	k: 1382	n:2440000
Cons ci ratio: 2.532573e-03	ci left: 4.948007e-01	ci right 4.960558e-01	k: 1208845	n:2440000
KS ci ratio: 1.053784e-01	ci left: 5.369298e-04	ci right 5.970527e-04	k: 1382	n:2440000
ASAP3   2440000 perm   3137 sec   (778 perm/sec)   p_kst 5.663934e-04   p_cons 4.954283e-01   p_joint 5.663934e-04

Joint ci ratio: 1.050749e-01	ci left: 5.379176e-04	ci right 5.979670e-04	k: 1390	n:2450000
Cons ci ratio: 2.527323e-03	ci left: 4.948170e-01	ci right 4.960695e-01	k: 1213836	n:2450000
KS ci ratio: 1.050749e-01	ci left: 5.379176e-04	ci right 5.979670e-04	k: 1390	n:2450000
ASAP3   2450000 perm   3161 sec   (775 perm/sec)   p_kst 5.673469e-04   p_cons 4.954433e-01   p_joint 5.673469e-04

Joint ci ratio: 1.048490e-01	ci left: 5.381059e-04	ci right 5.980392e-04	k: 1396	n:2460000
Cons ci ratio: 2.522201e-03	ci left: 4.948144e-01	ci right 4.960644e-01	k: 1218781	n:2460000
KS ci ratio: 1.048490e-01	ci left: 5.381059e-04	ci right 5.980392e-04	k: 1396	n:2460000
ASAP3   2460000 perm   3184 sec   (773 perm/sec)   p_kst 5.674797e-04   p_cons 4.954394e-01   p_joint 5.674797e-04

Joint ci ratio: 1.047367e-01	ci left: 5.371101e-04	ci right 5.968644e-04	k: 1399	n:2470000
Cons ci ratio: 2.517109e-03	ci left: 4.948119e-01	ci right 4.960594e-01	k: 1223726	n:2470000
KS ci ratio: 1.047367e-01	ci left: 5.371101e-04	ci right 5.968644e-04	k: 1399	n:2470000
ASAP3   2470000 perm   3209 sec   (770 perm/sec)   p_kst 5.663968e-04   p_cons 4.954356e-01   p_joint 5.663968e-04

Joint ci ratio: 1.044758e-01	ci left: 5.376931e-04	ci right 5.973541e-04	k: 1406	n:2480000
Cons ci ratio: 2.512206e-03	ci left: 4.947779e-01	ci right 4.960229e-01	k: 1228593	n:2480000
KS ci ratio: 1.044758e-01	ci left: 5.376931e-04	ci right 5.973541e-04	k: 1406	n:2480000
ASAP3   2480000 perm   3232 sec   (767 perm/sec)   p_kst 5.669355e-04   p_cons 4.954004e-01   p_joint 5.669355e-04

Joint ci ratio: 1.043276e-01	ci left: 5.370981e-04	ci right 5.966035e-04	k: 1410	n:2490000
Cons ci ratio: 2.507243e-03	ci left: 4.947619e-01	ci right 4.960044e-01	k: 1233504	n:2490000
KS ci ratio: 1.043276e-01	ci left: 5.370981e-04	ci right 5.966035e-04	k: 1410	n:2490000
ASAP3   2490000 perm   3256 sec   (765 perm/sec)   p_kst 5.662651e-04   p_cons 4.953831e-01   p_joint 5.662651e-04

Joint ci ratio: 1.041065e-01	ci left: 5.372872e-04	ci right 5.966796e-04	k: 1416	n:2500000
Cons ci ratio: 2.502089e-03	ci left: 4.947900e-01	ci right 4.960300e-01	k: 1238525	n:2500000
KS ci ratio: 1.041065e-01	ci left: 5.372872e-04	ci right 5.966796e-04	k: 1416	n:2500000
ASAP3   2500000 perm   3280 sec   (762 perm/sec)   p_kst 5.664000e-04   p_cons 4.954100e-01   p_joint 5.664000e-04

Joint ci ratio: 1.037410e-01	ci left: 5.390271e-04	ci right 5.983899e-04	k: 1426	n:2510000
Cons ci ratio: 2.496961e-03	ci left: 4.948191e-01	ci right 4.960566e-01	k: 1243549	n:2510000
KS ci ratio: 1.037410e-01	ci left: 5.390271e-04	ci right 5.983899e-04	k: 1426	n:2510000
ASAP3   2510000 perm   3305 sec   (760 perm/sec)   p_kst 5.681275e-04   p_cons 4.954378e-01   p_joint 5.681275e-04

Joint ci ratio: 1.035960e-01	ci left: 5.384343e-04	ci right 5.976438e-04	k: 1430	n:2520000
Cons ci ratio: 2.491747e-03	ci left: 4.948714e-01	ci right 4.961064e-01	k: 1248632	n:2520000
KS ci ratio: 1.035960e-01	ci left: 5.384343e-04	ci right 5.976438e-04	k: 1430	n:2520000
ASAP3   2520000 perm   3329 sec   (757 perm/sec)   p_kst 5.674603e-04   p_cons 4.954889e-01   p_joint 5.674603e-04

Joint ci ratio: 1.034515e-01	ci left: 5.378462e-04	ci right 5.969036e-04	k: 1434	n:2530000
Cons ci ratio: 2.486762e-03	ci left: 4.948837e-01	ci right 4.961163e-01	k: 1253615	n:2530000
KS ci ratio: 1.034515e-01	ci left: 5.378462e-04	ci right 5.969036e-04	k: 1434	n:2530000
ASAP3   2530000 perm   3354 sec   (754 perm/sec)   p_kst 5.667984e-04   p_cons 4.955000e-01   p_joint 5.667984e-04

Joint ci ratio: 1.032718e-01	ci left: 5.376463e-04	ci right 5.965729e-04	k: 1439	n:2540000
Cons ci ratio: 2.481935e-03	ci left: 4.948704e-01	ci right 4.961005e-01	k: 1258533	n:2540000
KS ci ratio: 1.032718e-01	ci left: 5.376463e-04	ci right 5.965729e-04	k: 1439	n:2540000
ASAP3   2540000 perm   3378 sec   (752 perm/sec)   p_kst 5.665354e-04   p_cons 4.954854e-01   p_joint 5.665354e-04

Joint ci ratio: 1.030573e-01	ci left: 5.378301e-04	ci right 5.966470e-04	k: 1445	n:2550000
Cons ci ratio: 2.476912e-03	ci left: 4.949022e-01	ci right 4.961299e-01	k: 1263566	n:2550000
KS ci ratio: 1.030573e-01	ci left: 5.378301e-04	ci right 5.966470e-04	k: 1445	n:2550000
ASAP3   2550000 perm   3402 sec   (750 perm/sec)   p_kst 5.666667e-04   p_cons 4.955161e-01   p_joint 5.666667e-04

Joint ci ratio: 1.027733e-01	ci left: 5.387738e-04	ci right 5.975218e-04	k: 1453	n:2560000
Cons ci ratio: 2.471948e-03	ci left: 4.949280e-01	ci right 4.961533e-01	k: 1268584	n:2560000
KS ci ratio: 1.027733e-01	ci left: 5.387738e-04	ci right 5.975218e-04	k: 1453	n:2560000
ASAP3   2560000 perm   3427 sec   (747 perm/sec)   p_kst 5.675781e-04   p_cons 4.955406e-01   p_joint 5.675781e-04

Joint ci ratio: 1.025268e-01	ci left: 5.393312e-04	ci right 5.979904e-04	k: 1460	n:2570000
Cons ci ratio: 2.467035e-03	ci left: 4.949492e-01	ci right 4.961722e-01	k: 1273591	n:2570000
KS ci ratio: 1.025268e-01	ci left: 5.393312e-04	ci right 5.979904e-04	k: 1460	n:2570000
ASAP3   2570000 perm   3452 sec   (745 perm/sec)   p_kst 5.680934e-04   p_cons 4.955607e-01   p_joint 5.680934e-04

Joint ci ratio: 1.022820e-01	ci left: 5.398845e-04	ci right 5.984553e-04	k: 1467	n:2580000
Cons ci ratio: 2.462222e-03	ci left: 4.949560e-01	ci right 4.961766e-01	k: 1278561	n:2580000
KS ci ratio: 1.022820e-01	ci left: 5.398845e-04	ci right 5.984553e-04	k: 1467	n:2580000
ASAP3   2580000 perm   3477 sec   (742 perm/sec)   p_kst 5.686047e-04   p_cons 4.955663e-01   p_joint 5.686047e-04

Joint ci ratio: 1.021430e-01	ci left: 5.393049e-04	ci right 5.977285e-04	k: 1471	n:2590000
Cons ci ratio: 2.457416e-03	ci left: 4.949670e-01	ci right 4.961852e-01	k: 1283542	n:2590000
KS ci ratio: 1.021430e-01	ci left: 5.393049e-04	ci right 5.977285e-04	k: 1471	n:2590000
ASAP3   2590000 perm   3501 sec   (740 perm/sec)   p_kst 5.679537e-04   p_cons 4.955761e-01   p_joint 5.679537e-04

Joint ci ratio: 1.017634e-01	ci left: 5.413535e-04	ci right 5.997681e-04	k: 1482	n:2600000
Cons ci ratio: 2.452643e-03	ci left: 4.949767e-01	ci right 4.961925e-01	k: 1288520	n:2600000
KS ci ratio: 1.017634e-01	ci left: 5.413535e-04	ci right 5.997681e-04	k: 1482	n:2600000
ASAP3   2600000 perm   3526 sec   (737 perm/sec)   p_kst 5.700000e-04   p_cons 4.955846e-01   p_joint 5.700000e-04

Joint ci ratio: 1.016607e-01	ci left: 5.403996e-04	ci right 5.986488e-04	k: 1485	n:2610000
Cons ci ratio: 2.447996e-03	ci left: 4.949664e-01	ci right 4.961799e-01	k: 1293446	n:2610000
KS ci ratio: 1.016607e-01	ci left: 5.403996e-04	ci right 5.986488e-04	k: 1485	n:2610000
ASAP3   2610000 perm   3552 sec   (735 perm/sec)   p_kst 5.689655e-04   p_cons 4.955732e-01   p_joint 5.689655e-04

Joint ci ratio: 1.014901e-01	ci left: 5.401969e-04	ci right 5.983208e-04	k: 1490	n:2620000
Cons ci ratio: 2.443196e-03	ci left: 4.949929e-01	ci right 4.962041e-01	k: 1298468	n:2620000
KS ci ratio: 1.014901e-01	ci left: 5.401969e-04	ci right 5.983208e-04	k: 1490	n:2620000
ASAP3   2620000 perm   3577 sec   (733 perm/sec)   p_kst 5.687023e-04   p_cons 4.955985e-01   p_joint 5.687023e-04

Joint ci ratio: 1.012526e-01	ci left: 5.407370e-04	ci right 5.987748e-04	k: 1497	n:2630000
Cons ci ratio: 2.438529e-03	ci left: 4.949978e-01	ci right 4.962067e-01	k: 1303434	n:2630000
KS ci ratio: 1.012526e-01	ci left: 5.407370e-04	ci right 5.987748e-04	k: 1497	n:2630000
ASAP3   2630000 perm   3602 sec   (730 perm/sec)   p_kst 5.692015e-04   p_cons 4.956023e-01   p_joint 5.692015e-04

Joint ci ratio: 1.009163e-01	ci left: 5.423809e-04	ci right 6.003903e-04	k: 1507	n:2640000
Cons ci ratio: 2.433801e-03	ci left: 4.950206e-01	ci right 4.962272e-01	k: 1308447	n:2640000
KS ci ratio: 1.009163e-01	ci left: 5.423809e-04	ci right 6.003903e-04	k: 1507	n:2640000
ASAP3   2640000 perm   3627 sec   (728 perm/sec)   p_kst 5.708333e-04   p_cons 4.956239e-01   p_joint 5.708333e-04

Joint ci ratio: 1.007827e-01	ci left: 5.418056e-04	ci right 5.996722e-04	k: 1511	n:2650000
Cons ci ratio: 2.429245e-03	ci left: 4.950133e-01	ci right 4.962176e-01	k: 1313381	n:2650000
KS ci ratio: 1.007827e-01	ci left: 5.418056e-04	ci right 5.996722e-04	k: 1511	n:2650000
ASAP3   2650000 perm   3652 sec   (726 perm/sec)   p_kst 5.701887e-04   p_cons 4.956155e-01   p_joint 5.701887e-04

Joint ci ratio: 1.005834e-01	ci left: 5.419675e-04	ci right 5.997302e-04	k: 1517	n:2660000
Cons ci ratio: 2.424753e-03	ci left: 4.949982e-01	ci right 4.962003e-01	k: 1318294	n:2660000
KS ci ratio: 1.005834e-01	ci left: 5.419675e-04	ci right 5.997302e-04	k: 1517	n:2660000
ASAP3   2660000 perm   3678 sec   (723 perm/sec)   p_kst 5.703008e-04   p_cons 4.955992e-01   p_joint 5.703008e-04

Joint ci ratio: 1.004181e-01	ci left: 5.417633e-04	ci right 5.994038e-04	k: 1522	n:2670000
Cons ci ratio: 2.420243e-03	ci left: 4.949922e-01	ci right 4.961920e-01	k: 1323231	n:2670000
KS ci ratio: 1.004181e-01	ci left: 5.417633e-04	ci right 5.994038e-04	k: 1522	n:2670000
ASAP3   2670000 perm   3704 sec   (721 perm/sec)   p_kst 5.700375e-04   p_cons 4.955921e-01   p_joint 5.700375e-04

Joint ci ratio: 1.003194e-01	ci left: 5.408331e-04	ci right 5.983147e-04	k: 1525	n:2680000
Cons ci ratio: 2.415860e-03	ci left: 4.949650e-01	ci right 4.961626e-01	k: 1328111	n:2680000
KS ci ratio: 1.003194e-01	ci left: 5.408331e-04	ci right 5.983147e-04	k: 1525	n:2680000
ASAP3   2680000 perm   3729 sec   (719 perm/sec)   p_kst 5.690299e-04   p_cons 4.955638e-01   p_joint 5.690299e-04

Joint ci ratio: 9.992718e-02	ci left: 5.431718e-04	ci right 6.006631e-04	k: 1537	n:2690000
Cons ci ratio: 2.411332e-03	ci left: 4.949730e-01	ci right 4.961683e-01	k: 1333085	n:2690000
KS ci ratio: 9.992718e-02	ci left: 5.431718e-04	ci right 6.006631e-04	k: 1537	n:2690000
ASAP3   2690000 perm   3755 sec   (716 perm/sec)   p_kst 5.713755e-04   p_cons 4.955706e-01   p_joint 5.713755e-04

Outputting figure to mutsig2_images.part000000000012/ASAP3.2_2835_2690000_0.00057138_0.49557_0.00057138.png
                gene_name: ASAP3
               theta_stop: 0.100 
                    nperm: 2690000 
                     p_ks: 0.00057 
        ci_ks_bounds_left: 0.00054 
       ci_ks_bounds_right: 0.00060 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.00057 
     ci_joint_bounds_left: 0.00054 
    ci_joint_bounds_right: 0.00060 

Current progress: 79 percent done.
ASB18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.708756e-02	ci left: 5.177583e-01	ci right 5.374256e-01	k: 5276	n:10000
Cons ci ratio: 4.415312e-02	ci left: 4.309378e-01	ci right 4.504967e-01	k: 4407	n:10000
KS ci ratio: 6.419492e-02	ci left: 2.628009e-01	ci right 2.803323e-01	k: 2715	n:10000
ASB18   10000 perm   2 sec   (6383 perm/sec)   p_kst 2.715000e-01   p_cons 4.407000e-01   p_joint 5.276000e-01

Outputting figure to mutsig2_images.part000000000012/ASB18.2_1424_10000_0.2715_0.4407_0.5276.png
                gene_name: ASB18
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 81 percent done.
ASCC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.609546e-02	ci left: 6.837536e-01	ci right 7.019339e-01	k: 6929	n:10000
Cons ci ratio: 1.184452e-02	ci left: 9.108030e-01	ci right 9.217531e-01	k: 9164	n:10000
KS ci ratio: 6.689629e-02	ci left: 2.469740e-01	ci right 2.641687e-01	k: 2555	n:10000
ASCC2   10000 perm   2 sec   (5589 perm/sec)   p_kst 2.555000e-01   p_cons 9.164000e-01   p_joint 6.929000e-01

Outputting figure to mutsig2_images.part000000000012/ASCC2.2_2350_10000_0.2555_0.9164_0.6929.png
                gene_name: ASCC2
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 83 percent done.
ASPHD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.529587e-02	ci left: 5.423897e-01	ci right 5.619799e-01	k: 5522	n:10000
Cons ci ratio: 1.170758e-01	ci left: 9.486876e-02	ci right 1.067649e-01	k: 1007	n:10000
KS ci ratio: 3.938267e-02	ci left: 4.877522e-01	ci right 5.074492e-01	k: 4976	n:10000
ASPHD2   10000 perm   2 sec   (6447 perm/sec)   p_kst 4.976000e-01   p_cons 1.007000e-01   p_joint 5.522000e-01

Joint ci ratio: 9.454337e-02	ci left: 7.539590e-02	ci right 8.292699e-02	k: 1582	n:20000
Cons ci ratio: 8.242343e-02	ci left: 9.739693e-02	ci right 1.058193e-01	k: 2031	n:20000
KS ci ratio: 2.819735e-02	ci left: 4.844482e-01	ci right 4.983543e-01	k: 9828	n:20000
ASPHD2   20000 perm   4 sec   (5665 perm/sec)   p_kst 4.914000e-01   p_cons 1.015500e-01   p_joint 7.910000e-02

Outputting figure to mutsig2_images.part000000000012/ASPHD2.2_1122_20000_0.4914_0.10155_0.0791.png
                gene_name: ASPHD2
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.097 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.079 
     ci_joint_bounds_left: 0.075 
    ci_joint_bounds_right: 0.083 

Current progress: 85 percent done.
ASPRV1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.200770e-02	ci left: 2.203008e-01	ci right 2.368576e-01	k: 2285	n:10000
Cons ci ratio: 1.052715e-02	ci left: 9.277156e-01	ci right 9.376305e-01	k: 9328	n:10000
KS ci ratio: 1.814227e-01	ci left: 4.054168e-02	ci right 4.872625e-02	k: 445	n:10000
ASPRV1   10000 perm   2 sec   (6447 perm/sec)   p_kst 4.450000e-02   p_cons 9.328000e-01   p_joint 2.285000e-01

Joint ci ratio: 5.522945e-02	ci left: 1.956132e-01	ci right 2.067738e-01	k: 4023	n:20000
Cons ci ratio: 6.848713e-03	ci left: 9.391838e-01	ci right 9.456868e-01	k: 18850	n:20000
KS ci ratio: 1.265168e-01	ci left: 4.289548e-02	ci right 4.873749e-02	k: 915	n:20000
ASPRV1   20000 perm   3 sec   (5733 perm/sec)   p_kst 4.575000e-02   p_cons 9.425000e-01   p_joint 2.011500e-01

Joint ci ratio: 4.996626e-02	ci left: 1.659628e-01	ci right 1.745011e-01	k: 5106	n:30000
Cons ci ratio: 5.610210e-03	ci left: 9.394314e-01	ci right 9.447492e-01	k: 28264	n:30000
KS ci ratio: 1.024063e-01	ci left: 4.417714e-02	ci right 4.897783e-02	k: 1396	n:30000
ASPRV1   30000 perm   6 sec   (5446 perm/sec)   p_kst 4.653333e-02   p_cons 9.421333e-01   p_joint 1.702000e-01

Joint ci ratio: 4.326578e-02	ci left: 1.665782e-01	ci right 1.739697e-01	k: 6810	n:40000
Cons ci ratio: 4.887571e-03	ci left: 9.391299e-01	ci right 9.437557e-01	k: 37659	n:40000
KS ci ratio: 8.902986e-02	ci left: 4.416335e-02	ci right 4.830285e-02	k: 1848	n:40000
ASPRV1   40000 perm   8 sec   (5264 perm/sec)   p_kst 4.620000e-02   p_cons 9.414750e-01   p_joint 1.702500e-01

Outputting figure to mutsig2_images.part000000000012/ASPRV1.2_1036_40000_0.0462_0.94147_0.17025.png
                gene_name: ASPRV1
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.046 
        ci_ks_bounds_left: 0.044 
       ci_ks_bounds_right: 0.048 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.17 

Current progress: 87 percent done.
ASTL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.108203e-01	ci left: 1.050046e-01	ci right 1.174229e-01	k: 1111	n:10000
Cons ci ratio: 1.159281e-01	ci left: 9.662172e-02	ci right 1.086109e-01	k: 1025	n:10000
KS ci ratio: 4.649454e-02	ci left: 4.057173e-01	ci right 4.251320e-01	k: 4154	n:10000
ASTL   10000 perm   2 sec   (6291 perm/sec)   p_kst 4.154000e-01   p_cons 1.025000e-01   p_joint 1.111000e-01

Joint ci ratio: 7.984534e-02	ci left: 1.032395e-01	ci right 1.118750e-01	k: 2150	n:20000
Cons ci ratio: 8.159898e-02	ci left: 9.921306e-02	ci right 1.077026e-01	k: 2068	n:20000
KS ci ratio: 3.285258e-02	ci left: 4.089571e-01	ci right 4.226674e-01	k: 8316	n:20000
ASTL   20000 perm   4 sec   (5542 perm/sec)   p_kst 4.158000e-01   p_cons 1.034000e-01   p_joint 1.075000e-01

Outputting figure to mutsig2_images.part000000000012/ASTL.2_1331_20000_0.4158_0.1034_0.1075.png
                gene_name: ASTL
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.099 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 89 percent done.
ATAD3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.512284e-03	ci left: 9.778092e-01	ci right 9.833058e-01	k: 9807	n:10000
Cons ci ratio: 3.641604e-02	ci left: 5.268671e-01	ci right 5.465115e-01	k: 5367	n:10000
KS ci ratio: 3.841808e-02	ci left: 5.001504e-01	ci right 5.198437e-01	k: 5100	n:10000
ATAD3A   10000 perm   2 sec   (5779 perm/sec)   p_kst 5.100000e-01   p_cons 5.367000e-01   p_joint 9.807000e-01

Outputting figure to mutsig2_images.part000000000012/ATAD3A.2_1969_10000_0.51_0.5367_0.9807.png
                gene_name: ATAD3A
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 91 percent done.
ATF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.061076e-02	ci left: 9.266822e-01	ci right 9.366646e-01	k: 9318	n:10000
KS ci ratio: 3.107132e-02	ci left: 6.044766e-01	ci right 6.236569e-01	k: 6141	n:10000
ATF4   10000 perm   2 sec   (6478 perm/sec)   p_kst 6.141000e-01   p_cons 9.318000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000012/ATF4.2_1064_10000_0.6141_0.9318_1.png
                gene_name: ATF4
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
ATF6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.078481e-02	ci left: 9.245130e-01	ci right 9.346350e-01	k: 9297	n:10000
Cons ci ratio: 8.536721e-03	ci left: 9.505438e-01	ci right 9.587887e-01	k: 9548	n:10000
KS ci ratio: 2.801423e-02	ci left: 6.525320e-01	ci right 6.711736e-01	k: 6619	n:10000
ATF6   10000 perm   2 sec   (5724 perm/sec)   p_kst 6.619000e-01   p_cons 9.548000e-01   p_joint 9.297000e-01

Outputting figure to mutsig2_images.part000000000012/ATF6.2_2077_10000_0.6619_0.9548_0.9297.png
                gene_name: ATF6
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 96 percent done.
ATF6B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.088336e-02	ci left: 9.232741e-01	ci right 9.334747e-01	k: 9285	n:10000
Cons ci ratio: 3.170407e-02	ci left: 5.948373e-01	ci right 6.141018e-01	k: 6045	n:10000
KS ci ratio: 4.779148e-02	ci left: 3.924695e-01	ci right 4.117875e-01	k: 4021	n:10000
ATF6B   10000 perm   2 sec   (5703 perm/sec)   p_kst 4.021000e-01   p_cons 6.045000e-01   p_joint 9.285000e-01

Outputting figure to mutsig2_images.part000000000012/ATF6B.2_2184_10000_0.4021_0.6045_0.9285.png
                gene_name: ATF6B
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 98 percent done.
ATG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.557882e-02	ci left: 3.228692e-01	ci right 3.414287e-01	k: 3321	n:10000
Cons ci ratio: 4.372585e-02	ci left: 4.357256e-01	ci right 4.553061e-01	k: 4455	n:10000
KS ci ratio: 1.398907e-01	ci left: 6.768608e-02	ci right 7.796444e-02	k: 727	n:10000
ATG3   10000 perm   1 sec   (6745 perm/sec)   p_kst 7.270000e-02   p_cons 4.455000e-01   p_joint 3.321000e-01

Joint ci ratio: 1.515777e-02	ci left: 7.639019e-01	ci right 7.756196e-01	k: 15396	n:20000
Cons ci ratio: 3.059197e-02	ci left: 4.438867e-01	ci right 4.577276e-01	k: 9016	n:20000
KS ci ratio: 9.596603e-02	ci left: 7.329309e-02	ci right 8.073044e-02	k: 1539	n:20000
ATG3   20000 perm   3 sec   (5975 perm/sec)   p_kst 7.695000e-02   p_cons 4.508000e-01   p_joint 7.698000e-01

Outputting figure to mutsig2_images.part000000000012/ATG3.2_993_20000_0.07695_0.4508_0.7698.png
                gene_name: ATG3
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.077 
        ci_ks_bounds_left: 0.073 
       ci_ks_bounds_right: 0.081 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000012
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 12 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1543>
Subject: Job 8003851: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1543>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000013> was used as the working directory.
Started at Sun Nov 11 15:03:35 2012
Results reported at Sun Nov 11 15:12:20 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000013.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000013.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 13  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000013.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    598.04 sec.
    Max Memory :      4799 MB
    Max Swap   :      7067 MB

    Max Processes  :         7
    Max Threads    :        60

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
13
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 13
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 13: processing genes 1087 - 1176
Calculating significance of each gene.
Using projection method.
1087	ATG4C	1.991523e-01
1088	ATG4D	1.033178e-01
1089	ATG5	1
1090	ATG7	7.199233e-01
1091	ATG9A	9.043747e-01
1092	ATG9B	8.203067e-01
1093	ATHL1	1
1094	ATIC	8.761380e-01
1095	ATL1	1
1096	ATL2	2.357630e-01
1097	ATL3	7.652218e-01
1098	ATM	9.346165e-01
1099	ATMIN	1
1100	ATN1	1
1101	ATOH1	1
1102	ATOH7	1
1103	ATOH8	1
1104	ATOX1	1
1105	ATP10A	1
1106	ATP10B	1
1107	ATP10D	3.648053e-01
1108	ATP11A	6.977403e-01
1109	ATP11B	2.134291e-01
1110	ATP11C	1.169254e-01
1111	ATP12A	3.935614e-01
1112	ATP13A1	6.031840e-01
1113	ATP13A2	9.880012e-01
1114	ATP13A3	9.364502e-01
1115	ATP13A4	2.405719e-01
1116	ATP13A5	2.375670e-01
1117	ATP1A1	9.635359e-01
1118	ATP1A2	6.337603e-01
1119	ATP1A3	3.333672e-01
1120	ATP1A4	9.883738e-01
1121	ATP1B1	1
1122	ATP1B2	5.679442e-01
1123	ATP1B3	6.505688e-01
1124	ATP1B4	4.302522e-01
1125	ATP2A1	1
1126	ATP2A2	8.511684e-01
1127	ATP2A3	9.879341e-01
1128	ATP2B1	7.062623e-01
1129	ATP2B2	6.409332e-01
1130	ATP2B3	1
1131	ATP2B4	8.519203e-01
1132	ATP2C1	9.348262e-01
1133	ATP2C2	8.857685e-01
1134	ATP4A	5.897328e-01
1135	ATP4B	1.745332e-01
1136	ATP5A1	4.472147e-01
1137	ATP5B	5.554093e-01
1138	ATP5C1	6.802742e-02
1139	ATP5D	1
1140	ATP5E	1
1141	ATP5F1	1
1142	ATP5G1	1
1143	ATP5G2	1.170900e-01
1144	ATP5G3	3.862952e-01
1145	ATP5H	1
1146	ATP5I	1
1147	ATP5J	1
1148	ATP5J2	1
1149	ATP5L	2.396354e-01
1150	ATP5L2	1
1151	ATP5O	1
1152	ATP5S	5.981436e-01
1153	ATP5SL	1
1154	ATP6AP1	1
1155	ATP6AP1L	2.349235e-01
1156	ATP6AP2	4.711929e-01
1157	ATP6V0A1	6.523049e-01
1158	ATP6V0A2	3.142824e-01
1159	ATP6V0A4	7.387641e-01
1160	ATP6V0B	1
1161	ATP6V0C	1
1162	ATP6V0D1	3.975458e-01
1163	ATP6V0D2	3.854737e-01
1164	ATP6V0E1	1
1165	ATP6V0E2	1
1166	ATP6V1A	2.063721e-01
1167	ATP6V1B1	2.257671e-01
1168	ATP6V1B2	7.051907e-01
1169	ATP6V1C1	6.446111e-01
1170	ATP6V1C2	8.077548e-01
1171	ATP6V1D	6.509793e-01
1172	ATP6V1E1	1
1173	ATP6V1E2	1
1174	ATP6V1F	1
1175	ATP6V1G1	1
1176	ATP6V1G2	2.090134e-01
Done

Running MutSig 2:
Scatter job 13: processing genes 1087 - 1176
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ATP10A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.903033e-01	ci left: 3.681611e-02	ci right 4.465430e-02	k: 406	n:10000
Cons ci ratio: 2.423184e-01	ci left: 2.240510e-02	ci right 2.867545e-02	k: 254	n:10000
KS ci ratio: 1.572531e-01	ci left: 5.388306e-02	ci right 6.317620e-02	k: 584	n:10000
ATP10A   10000 perm   3 sec   (3646 perm/sec)   p_kst 5.840000e-02   p_cons 2.540000e-02   p_joint 4.060000e-02

Joint ci ratio: 2.180628e-01	ci left: 1.416473e-02	ci right 1.767805e-02	k: 317	n:20000
Cons ci ratio: 1.662350e-01	ci left: 2.479765e-02	ci right 2.934125e-02	k: 540	n:20000
KS ci ratio: 1.129508e-01	ci left: 5.358313e-02	ci right 6.004647e-02	k: 1135	n:20000
ATP10A   20000 perm   9 sec   (2245 perm/sec)   p_kst 5.675000e-02   p_cons 2.700000e-02   p_joint 1.585000e-02

Joint ci ratio: 1.632055e-01	ci left: 1.732516e-02	ci right 2.043567e-02	k: 565	n:30000
Cons ci ratio: 1.281768e-01	ci left: 2.829237e-02	ci right 3.219931e-02	k: 906	n:30000
KS ci ratio: 9.405248e-02	ci left: 5.215340e-02	ci right 5.733326e-02	k: 1641	n:30000
ATP10A   30000 perm   12 sec   (2495 perm/sec)   p_kst 5.470000e-02   p_cons 3.020000e-02   p_joint 1.883333e-02

Joint ci ratio: 1.350605e-01	ci left: 1.923041e-02	ci right 2.203979e-02	k: 824	n:40000
Cons ci ratio: 1.108316e-01	ci left: 2.864186e-02	ci right 3.202677e-02	k: 1212	n:40000
KS ci ratio: 7.893414e-02	ci left: 5.577808e-02	ci right 6.038634e-02	k: 2322	n:40000
ATP10A   40000 perm   15 sec   (2633 perm/sec)   p_kst 5.805000e-02   p_cons 3.030000e-02   p_joint 2.060000e-02

Joint ci ratio: 9.604689e-02	ci left: 3.068941e-02	ci right 3.380521e-02	k: 1611	n:50000
Cons ci ratio: 1.003403e-01	ci left: 2.813182e-02	ci right 3.112312e-02	k: 1480	n:50000
KS ci ratio: 7.087021e-02	ci left: 5.561289e-02	ci right 5.971865e-02	k: 2882	n:50000
ATP10A   50000 perm   18 sec   (2712 perm/sec)   p_kst 5.764000e-02   p_cons 2.960000e-02   p_joint 3.222000e-02

Joint ci ratio: 9.929686e-02	ci left: 2.405815e-02	ci right 2.658805e-02	k: 1518	n:60000
Cons ci ratio: 9.195038e-02	ci left: 2.804652e-02	ci right 3.076592e-02	k: 1763	n:60000
KS ci ratio: 6.444478e-02	ci left: 5.620843e-02	ci right 5.996779e-02	k: 3484	n:60000
ATP10A   60000 perm   22 sec   (2757 perm/sec)   p_kst 5.806667e-02   p_cons 2.938333e-02   p_joint 2.530000e-02

Outputting figure to mutsig2_images.part000000000013/ATP10A.17_4584_60000_0.058067_0.029383_0.0253.png
                gene_name: ATP10A
               theta_stop: 0.099 
                    nperm: 60000 
                     p_ks: 0.058 
        ci_ks_bounds_left: 0.056 
       ci_ks_bounds_right: 0.060 
                   p_cons: 0.029 
      ci_cons_bounds_left: 0.028 
     ci_cons_bounds_right: 0.031 
                  p_joint: 0.025 
     ci_joint_bounds_left: 0.024 
    ci_joint_bounds_right: 0.027 

Current progress: 2 percent done.
ATP10B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.046551e-02	ci left: 1.840255e-01	ci right 1.995545e-01	k: 1917	n:10000
Cons ci ratio: 2.111569e-02	ci left: 7.667873e-01	ci right 7.832521e-01	k: 7751	n:10000
KS ci ratio: 1.341162e-01	ci left: 7.339876e-02	ci right 8.404819e-02	k: 786	n:10000
ATP10B   10000 perm   2 sec   (4093 perm/sec)   p_kst 7.860000e-02   p_cons 7.751000e-01   p_joint 1.917000e-01

Joint ci ratio: 5.941274e-02	ci left: 1.734126e-01	ci right 1.840810e-01	k: 3574	n:20000
Cons ci ratio: 1.497380e-02	ci left: 7.682399e-01	ci right 7.798803e-01	k: 15482	n:20000
KS ci ratio: 9.470588e-02	ci left: 7.515134e-02	ci right 8.267162e-02	k: 1577	n:20000
ATP10B   20000 perm   5 sec   (3684 perm/sec)   p_kst 7.885000e-02   p_cons 7.741000e-01   p_joint 1.787000e-01

Outputting figure to mutsig2_images.part000000000013/ATP10B.11_4474_20000_0.07885_0.7741_0.1787.png
                gene_name: ATP10B
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.079 
        ci_ks_bounds_left: 0.075 
       ci_ks_bounds_right: 0.083 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 5 percent done.
ATP13A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.328022e-02	ci left: 3.417393e-01	ci right 3.605475e-01	k: 3511	n:10000
Cons ci ratio: 1.166260e-01	ci left: 9.555040e-02	ci right 1.074829e-01	k: 1014	n:10000
KS ci ratio: 2.471742e-02	ci left: 7.065452e-01	ci right 7.243291e-01	k: 7155	n:10000
ATP13A4   10000 perm   3 sec   (3911 perm/sec)   p_kst 7.155000e-01   p_cons 1.014000e-01   p_joint 3.511000e-01

Joint ci ratio: 3.470634e-02	ci left: 3.826336e-01	ci right 3.961985e-01	k: 7788	n:20000
Cons ci ratio: 8.210895e-02	ci left: 9.808407e-02	ci right 1.065320e-01	k: 2045	n:20000
KS ci ratio: 1.677380e-02	ci left: 7.257528e-01	ci right 7.380797e-01	k: 14639	n:20000
ATP13A4   20000 perm   6 sec   (3555 perm/sec)   p_kst 7.319500e-01   p_cons 1.022500e-01   p_joint 3.894000e-01

Outputting figure to mutsig2_images.part000000000013/ATP13A4.11_3711_20000_0.73195_0.10225_0.3894.png
                gene_name: ATP13A4
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.098 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 7 percent done.
ATP10D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.564455e-02	ci left: 1.657308e-01	ci right 1.806601e-01	k: 1731	n:10000
Cons ci ratio: 4.888187e-02	ci left: 3.817174e-01	ci right 4.009460e-01	k: 3913	n:10000
KS ci ratio: 9.999502e-02	ci left: 1.264999e-01	ci right 1.399146e-01	k: 1331	n:10000
ATP10D   10000 perm   2 sec   (4178 perm/sec)   p_kst 1.331000e-01   p_cons 3.913000e-01   p_joint 1.731000e-01

Outputting figure to mutsig2_images.part000000000013/ATP10D.10_4369_10000_0.1331_0.3913_0.1731.png
                gene_name: ATP10D
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 9 percent done.
ATM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.728889e-02	ci left: 5.150563e-01	ci right 5.347292e-01	k: 5249	n:10000
Cons ci ratio: 9.487959e-02	ci left: 1.388391e-01	ci right 1.527680e-01	k: 1457	n:10000
KS ci ratio: 1.414779e-02	ci left: 8.783802e-01	ci right 8.909947e-01	k: 8848	n:10000
ATM   10000 perm   4 sec   (2835 perm/sec)   p_kst 8.848000e-01   p_cons 1.457000e-01   p_joint 5.249000e-01

Outputting figure to mutsig2_images.part000000000013/ATM.8_9419_10000_0.8848_0.1457_0.5249.png
                gene_name: ATM
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.53 

Current progress: 11 percent done.
ATP11B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.972988e-02	ci left: 6.252749e-01	ci right 6.442466e-01	k: 6348	n:10000
Cons ci ratio: 5.396524e-02	ci left: 3.359772e-01	ci right 3.547130e-01	k: 3453	n:10000
KS ci ratio: 4.370816e-02	ci left: 4.359251e-01	ci right 4.555065e-01	k: 4457	n:10000
ATP11B   10000 perm   2 sec   (4470 perm/sec)   p_kst 4.457000e-01   p_cons 3.453000e-01   p_joint 6.348000e-01

Outputting figure to mutsig2_images.part000000000013/ATP11B.7_3654_10000_0.4457_0.3453_0.6348.png
                gene_name: ATP11B
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.64 

Current progress: 14 percent done.
ATP11C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.343015e-01	ci left: 7.320496e-02	ci right 8.384211e-02	k: 784	n:10000
Cons ci ratio: 4.014615e-02	ci left: 4.781577e-01	ci right 4.978493e-01	k: 4880	n:10000
KS ci ratio: 2.013935e-01	ci left: 3.281488e-02	ci right 4.025825e-02	k: 364	n:10000
ATP11C   10000 perm   2 sec   (4385 perm/sec)   p_kst 3.640000e-02   p_cons 4.880000e-01   p_joint 7.840000e-02

Joint ci ratio: 9.483644e-02	ci left: 7.495571e-02	ci right 8.246732e-02	k: 1573	n:20000
Cons ci ratio: 2.854363e-02	ci left: 4.783510e-01	ci right 4.922532e-01	k: 9706	n:20000
KS ci ratio: 1.457587e-01	ci left: 3.235107e-02	ci right 3.748530e-02	k: 697	n:20000
ATP11C   20000 perm   5 sec   (3922 perm/sec)   p_kst 3.485000e-02   p_cons 4.853000e-01   p_joint 7.865000e-02

Joint ci ratio: 7.623155e-02	ci left: 7.790390e-02	ci right 8.411086e-02	k: 2429	n:30000
Cons ci ratio: 2.428924e-02	ci left: 4.590432e-01	ci right 4.703637e-01	k: 13941	n:30000
KS ci ratio: 1.193672e-01	ci left: 3.262511e-02	ci right 3.679896e-02	k: 1040	n:30000
ATP11C   30000 perm   8 sec   (3771 perm/sec)   p_kst 3.466667e-02   p_cons 4.647000e-01   p_joint 8.096667e-02

Joint ci ratio: 6.985704e-02	ci left: 7.042008e-02	ci right 7.554212e-02	k: 2918	n:40000
Cons ci ratio: 2.102060e-02	ci left: 4.601523e-01	ci right 4.699528e-01	k: 18602	n:40000
KS ci ratio: 1.000618e-01	ci left: 3.509815e-02	ci right 3.881946e-02	k: 1477	n:40000
ATP11C   40000 perm   11 sec   (3676 perm/sec)   p_kst 3.692500e-02   p_cons 4.650500e-01   p_joint 7.295000e-02

Joint ci ratio: 6.050790e-02	ci left: 7.509202e-02	ci right 7.979718e-02	k: 3871	n:50000
Cons ci ratio: 1.887388e-02	ci left: 4.587616e-01	ci right 4.675227e-01	k: 23157	n:50000
KS ci ratio: 8.913561e-02	ci left: 3.557765e-02	ci right 3.891635e-02	k: 1861	n:50000
ATP11C   50000 perm   14 sec   (3598 perm/sec)   p_kst 3.722000e-02   p_cons 4.631400e-01   p_joint 7.742000e-02

Outputting figure to mutsig2_images.part000000000013/ATP11C.7_3582_50000_0.03722_0.46314_0.07742.png
                gene_name: ATP11C
               theta_stop: 0.089 
                    nperm: 50000 
                     p_ks: 0.037 
        ci_ks_bounds_left: 0.036 
       ci_ks_bounds_right: 0.039 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.077 
     ci_joint_bounds_left: 0.075 
    ci_joint_bounds_right: 0.080 

Current progress: 16 percent done.
ATP12A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.998584e-02	ci left: 2.303719e-01	ci right 2.471805e-01	k: 2387	n:10000
Cons ci ratio: 1.058498e-01	ci left: 1.141806e-01	ci right 1.270413e-01	k: 1205	n:10000
KS ci ratio: 3.904550e-02	ci left: 4.920509e-01	ci right 5.117480e-01	k: 5019	n:10000
ATP12A   10000 perm   2 sec   (4582 perm/sec)   p_kst 5.019000e-01   p_cons 1.205000e-01   p_joint 2.387000e-01

Joint ci ratio: 3.811277e-02	ci left: 3.393056e-01	ci right 3.525392e-01	k: 6918	n:20000
Cons ci ratio: 7.148428e-02	ci left: 1.260082e-01	ci right 1.353995e-01	k: 2613	n:20000
KS ci ratio: 2.748468e-02	ci left: 4.972455e-01	ci right 5.111532e-01	k: 10084	n:20000
ATP12A   20000 perm   5 sec   (4155 perm/sec)   p_kst 5.042000e-01   p_cons 1.306500e-01   p_joint 3.459000e-01

Outputting figure to mutsig2_images.part000000000013/ATP12A.7_3230_20000_0.5042_0.13065_0.3459.png
                gene_name: ATP12A
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 18 percent done.
ATP13A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.310533e-02	ci left: 3.432297e-01	ci right 3.620562e-01	k: 3526	n:10000
Cons ci ratio: 1.752183e-02	ci left: 8.260517e-01	ci right 8.407535e-01	k: 8335	n:10000
KS ci ratio: 7.628204e-02	ci left: 2.008694e-01	ci right 2.169006e-01	k: 2088	n:10000
ATP13A5   10000 perm   2 sec   (4420 perm/sec)   p_kst 2.088000e-01   p_cons 8.335000e-01   p_joint 3.526000e-01

Outputting figure to mutsig2_images.part000000000013/ATP13A5.7_3775_10000_0.2088_0.8335_0.3526.png
                gene_name: ATP13A5
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 20 percent done.
ATP1A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.345173e-02	ci left: 8.885187e-01	ci right 9.006503e-01	k: 8947	n:10000
KS ci ratio: 8.516963e-03	ci left: 9.507523e-01	ci right 9.589800e-01	k: 9550	n:10000
ATP1A2   10000 perm   2 sec   (5052 perm/sec)   p_kst 9.550000e-01   p_cons 8.947000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000013/ATP1A2.7_3155_10000_0.955_0.8947_1.png
                gene_name: ATP1A2
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 23 percent done.
ATP2B2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.561466e-02	ci left: 1.658291e-01	ci right 1.807618e-01	k: 1732	n:10000
Cons ci ratio: 7.677004e-02	ci left: 1.987996e-01	ci right 2.147715e-01	k: 2067	n:10000
KS ci ratio: 9.134967e-02	ci left: 1.483504e-01	ci right 1.626509e-01	k: 1554	n:10000
ATP2B2   10000 perm   2 sec   (4281 perm/sec)   p_kst 1.554000e-01   p_cons 2.067000e-01   p_joint 1.732000e-01

Outputting figure to mutsig2_images.part000000000013/ATP2B2.7_3820_10000_0.1554_0.2067_0.1732.png
                gene_name: ATP2B2
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 25 percent done.
ATG7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.688685e-02	ci left: 8.362290e-01	ci right 8.505703e-01	k: 8435	n:10000
Cons ci ratio: 2.147867e-02	ci left: 7.607128e-01	ci right 7.773302e-01	k: 7691	n:10000
KS ci ratio: 2.430514e-02	ci left: 7.134081e-01	ci right 7.310622e-01	k: 7223	n:10000
ATG7   10000 perm   2 sec   (4354 perm/sec)   p_kst 7.223000e-01   p_cons 7.691000e-01   p_joint 8.435000e-01

Outputting figure to mutsig2_images.part000000000013/ATG7.6_2184_10000_0.7223_0.7691_0.8435.png
                gene_name: ATG7
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 27 percent done.
ATP11A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.158161e-02	ci left: 2.223737e-01	ci right 2.389835e-01	k: 2306	n:10000
Cons ci ratio: 9.476548e-02	ci left: 1.391331e-01	ci right 1.530738e-01	k: 1460	n:10000
KS ci ratio: 7.359516e-02	ci left: 2.128012e-01	ci right 2.291616e-01	k: 2209	n:10000
ATP11A   10000 perm   2 sec   (4402 perm/sec)   p_kst 2.209000e-01   p_cons 1.460000e-01   p_joint 2.306000e-01

Outputting figure to mutsig2_images.part000000000013/ATP11A.6_3774_10000_0.2209_0.146_0.2306.png
                gene_name: ATP11A
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 30 percent done.
ATP13A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.072075e-02	ci left: 4.710641e-01	ci right 4.907470e-01	k: 4809	n:10000
Cons ci ratio: 7.378805e-02	ci left: 2.119134e-01	ci right 2.282500e-01	k: 2200	n:10000
KS ci ratio: 3.113690e-02	ci left: 6.034724e-01	ci right 6.226617e-01	k: 6131	n:10000
ATP13A3   10000 perm   2 sec   (4340 perm/sec)   p_kst 6.131000e-01   p_cons 2.200000e-01   p_joint 4.809000e-01

Outputting figure to mutsig2_images.part000000000013/ATP13A3.6_3805_10000_0.6131_0.22_0.4809.png
                gene_name: ATP13A3
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 32 percent done.
ATP1A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.619910e-02	ci left: 4.088062e-01	ci right 4.282413e-01	k: 4185	n:10000
Cons ci ratio: 3.040660e-02	ci left: 6.147227e-01	ci right 6.338048e-01	k: 6243	n:10000
KS ci ratio: 6.054087e-02	ci left: 2.863697e-01	ci right 3.043496e-01	k: 2953	n:10000
ATP1A3   10000 perm   2 sec   (4615 perm/sec)   p_kst 2.953000e-01   p_cons 6.243000e-01   p_joint 4.185000e-01

Outputting figure to mutsig2_images.part000000000013/ATP1A3.6_3134_10000_0.2953_0.6243_0.4185.png
                gene_name: ATP1A3
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 34 percent done.
ATP1A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.590614e-02	ci left: 4.118954e-01	ci right 4.313503e-01	k: 4216	n:10000
Cons ci ratio: 1.004954e-02	ci left: 9.335086e-01	ci right 9.430341e-01	k: 9384	n:10000
KS ci ratio: 5.727471e-02	ci left: 3.097694e-01	ci right 3.281362e-01	k: 3189	n:10000
ATP1A4   10000 perm   2 sec   (4325 perm/sec)   p_kst 3.189000e-01   p_cons 9.384000e-01   p_joint 4.216000e-01

Outputting figure to mutsig2_images.part000000000013/ATP1A4.6_3178_10000_0.3189_0.9384_0.4216.png
                gene_name: ATP1A4
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 36 percent done.
ATP4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.248318e-02	ci left: 3.485962e-01	ci right 3.674866e-01	k: 3580	n:10000
Cons ci ratio: 7.947409e-03	ci left: 9.566005e-01	ci right 9.643283e-01	k: 9606	n:10000
KS ci ratio: 7.312811e-02	ci left: 2.149717e-01	ci right 2.313898e-01	k: 2231	n:10000
ATP4A   10000 perm   2 sec   (4448 perm/sec)   p_kst 2.231000e-01   p_cons 9.606000e-01   p_joint 3.580000e-01

Outputting figure to mutsig2_images.part000000000013/ATP4A.6_3196_10000_0.2231_0.9606_0.358.png
                gene_name: ATP4A
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 39 percent done.
ATP6V0A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.778681e-02	ci left: 2.420311e-01	ci right 2.591144e-01	k: 2505	n:10000
Cons ci ratio: 2.883207e-02	ci left: 6.394525e-01	ci right 6.582607e-01	k: 6489	n:10000
KS ci ratio: 9.025256e-02	ci left: 1.514904e-01	ci right 1.659090e-01	k: 1586	n:10000
ATP6V0A2   10000 perm   2 sec   (4890 perm/sec)   p_kst 1.586000e-01   p_cons 6.489000e-01   p_joint 2.505000e-01

Outputting figure to mutsig2_images.part000000000013/ATP6V0A2.5_2651_10000_0.1586_0.6489_0.2505.png
                gene_name: ATP6V0A2
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 41 percent done.
ATG4D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.744616e-02	ci left: 5.129549e-01	ci right 5.326318e-01	k: 5228	n:10000
Cons ci ratio: 3.050389e-02	ci left: 6.132157e-01	ci right 6.323128e-01	k: 6228	n:10000
KS ci ratio: 5.254030e-02	ci left: 3.480992e-01	ci right 3.669838e-01	k: 3575	n:10000
ATG4D   10000 perm   2 sec   (5534 perm/sec)   p_kst 3.575000e-01   p_cons 6.228000e-01   p_joint 5.228000e-01

Outputting figure to mutsig2_images.part000000000013/ATG4D.4_1465_10000_0.3575_0.6228_0.5228.png
                gene_name: ATG4D
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 43 percent done.
ATL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.167123e-02	ci left: 3.557534e-01	ci right 3.747251e-01	k: 3652	n:10000
Cons ci ratio: 1.797425e-02	ci left: 8.187299e-01	ci right 8.336795e-01	k: 8263	n:10000
KS ci ratio: 7.859457e-02	ci left: 1.913119e-01	ci right 2.070637e-01	k: 1991	n:10000
ATL2   10000 perm   2 sec   (5376 perm/sec)   p_kst 1.991000e-01   p_cons 8.263000e-01   p_joint 3.652000e-01

Outputting figure to mutsig2_images.part000000000013/ATL2.4_1916_10000_0.1991_0.8263_0.3652.png
                gene_name: ATL2
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 45 percent done.
ATP13A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.474272e-02	ci left: 5.502047e-01	ci right 5.697603e-01	k: 5600	n:10000
Cons ci ratio: 1.289569e-02	ci left: 8.964156e-01	ci right 9.081488e-01	k: 9024	n:10000
KS ci ratio: 5.925716e-02	ci left: 2.952901e-01	ci right 3.134240e-01	k: 3043	n:10000
ATP13A1   10000 perm   2 sec   (4769 perm/sec)   p_kst 3.043000e-01   p_cons 9.024000e-01   p_joint 5.600000e-01

Outputting figure to mutsig2_images.part000000000013/ATP13A1.4_3719_10000_0.3043_0.9024_0.56.png
                gene_name: ATP13A1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 48 percent done.
ATP2B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.684280e-02	ci left: 5.210611e-01	ci right 5.407209e-01	k: 5309	n:10000
Cons ci ratio: 3.255266e-02	ci left: 5.820912e-01	ci right 6.014553e-01	k: 5918	n:10000
KS ci ratio: 6.092113e-02	ci left: 2.837935e-01	ci right 3.017273e-01	k: 2927	n:10000
ATP2B1   10000 perm   2 sec   (4495 perm/sec)   p_kst 2.927000e-01   p_cons 5.918000e-01   p_joint 5.309000e-01

Outputting figure to mutsig2_images.part000000000013/ATP2B1.4_3901_10000_0.2927_0.5918_0.5309.png
                gene_name: ATP2B1
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 50 percent done.
ATP2C1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.579244e-02	ci left: 3.211817e-01	ci right 3.397172e-01	k: 3304	n:10000
Cons ci ratio: 1.408318e-01	ci left: 6.681548e-02	ci right 7.703558e-02	k: 718	n:10000
KS ci ratio: 4.573716e-02	ci left: 4.136894e-01	ci right 4.331553e-01	k: 4234	n:10000
ATP2C1   10000 perm   2 sec   (5025 perm/sec)   p_kst 4.234000e-01   p_cons 7.180000e-02   p_joint 3.304000e-01

Joint ci ratio: 3.544365e-02	ci left: 3.727178e-01	ci right 3.862172e-01	k: 7589	n:20000
Cons ci ratio: 9.333221e-02	ci left: 7.725487e-02	ci right 8.486745e-02	k: 1620	n:20000
KS ci ratio: 3.281542e-02	ci left: 4.095057e-01	ci right 4.232186e-01	k: 8327	n:20000
ATP2C1   20000 perm   4 sec   (4470 perm/sec)   p_kst 4.163500e-01   p_cons 8.100000e-02   p_joint 3.794500e-01

Outputting figure to mutsig2_images.part000000000013/ATP2C1.4_2968_20000_0.41635_0.081_0.37945.png
                gene_name: ATP2C1
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.081 
      ci_cons_bounds_left: 0.077 
     ci_cons_bounds_right: 0.085 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 52 percent done.
ATP6V0A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.081274e-02	ci left: 7.718513e-01	ci right 7.881853e-01	k: 7801	n:10000
Cons ci ratio: 1.009590e-01	ci left: 1.243474e-01	ci right 1.376684e-01	k: 1309	n:10000
KS ci ratio: 2.581993e-02	ci left: 6.882897e-01	ci right 7.063952e-01	k: 6974	n:10000
ATP6V0A1   10000 perm   2 sec   (4804 perm/sec)   p_kst 6.974000e-01   p_cons 1.309000e-01   p_joint 7.801000e-01

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 7.170532e-02	ci left: 1.253190e-01	ci right 1.346889e-01	k: 2599	n:20000
KS ci ratio: 1.838349e-02	ci left: 6.880633e-01	ci right 7.008801e-01	k: 13890	n:20000
ATP6V0A1   20000 perm   5 sec   (4294 perm/sec)   p_kst 6.945000e-01   p_cons 1.299500e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000013/ATP6V0A1.4_2619_20000_0.6945_0.12995_1.png
                gene_name: ATP6V0A1
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.13 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 55 percent done.
ATP6V1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.201483e-01	ci left: 9.039166e-02	ci right 1.020448e-01	k: 961	n:10000
Cons ci ratio: 1.709886e-03	ci left: 9.971567e-01	ci right 9.989329e-01	k: 9982	n:10000
KS ci ratio: 1.354280e-01	ci left: 7.204238e-02	ci right 8.260541e-02	k: 772	n:10000
ATP6V1A   10000 perm   2 sec   (5463 perm/sec)   p_kst 7.720000e-02   p_cons 9.982000e-01   p_joint 9.610000e-02

Joint ci ratio: 8.965107e-02	ci left: 8.332519e-02	ci right 9.119529e-02	k: 1744	n:20000
Cons ci ratio: 1.359390e-03	ci left: 9.968762e-01	ci right 9.982728e-01	k: 19953	n:20000
KS ci ratio: 9.552987e-02	ci left: 7.392873e-02	ci right 8.139460e-02	k: 1552	n:20000
ATP6V1A   20000 perm   4 sec   (4826 perm/sec)   p_kst 7.760000e-02   p_cons 9.976500e-01   p_joint 8.720000e-02

Outputting figure to mutsig2_images.part000000000013/ATP6V1A.4_1910_20000_0.0776_0.99765_0.0872.png
                gene_name: ATP6V1A
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.078 
        ci_ks_bounds_left: 0.074 
       ci_ks_bounds_right: 0.081 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.087 
     ci_joint_bounds_left: 0.083 
    ci_joint_bounds_right: 0.091 

Current progress: 57 percent done.
ATG4C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.182775e-03	ci left: 9.639407e-01	ci right 9.709836e-01	k: 9676	n:10000
KS ci ratio: 5.028991e-03	ci left: 9.812374e-01	ci right 9.862751e-01	k: 9839	n:10000
ATG4C   10000 perm   2 sec   (6193 perm/sec)   p_kst 9.839000e-01   p_cons 9.676000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000013/ATG4C.3_1417_10000_0.9839_0.9676_1.png
                gene_name: ATG4C
               theta_stop: 0.0072 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 59 percent done.
ATP2A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.058498e-01	ci left: 1.141806e-01	ci right 1.270413e-01	k: 1205	n:10000
Cons ci ratio: 1.118988e-01	ci left: 1.031515e-01	ci right 1.154771e-01	k: 1092	n:10000
KS ci ratio: 1.454625e-01	ci left: 6.275582e-02	ci right 7.269780e-02	k: 676	n:10000
ATP2A2   10000 perm   2 sec   (5002 perm/sec)   p_kst 6.760000e-02   p_cons 1.092000e-01   p_joint 1.205000e-01

Joint ci ratio: 1.089404e-01	ci left: 5.747851e-02	ci right 6.414988e-02	k: 1215	n:20000
Cons ci ratio: 7.900420e-02	ci left: 1.052534e-01	ci right 1.139605e-01	k: 2191	n:20000
KS ci ratio: 1.046534e-01	ci left: 6.210954e-02	ci right 6.901742e-02	k: 1310	n:20000
ATP2A2   20000 perm   5 sec   (4423 perm/sec)   p_kst 6.550000e-02   p_cons 1.095500e-01   p_joint 6.075000e-02

Joint ci ratio: 6.262937e-02	ci left: 1.118710e-01	ci right 1.191370e-01	k: 3464	n:30000
Cons ci ratio: 6.504149e-02	ci left: 1.044763e-01	ci right 1.115331e-01	k: 3239	n:30000
KS ci ratio: 8.569486e-02	ci left: 6.239923e-02	ci right 6.801866e-02	k: 1955	n:30000
ATP2A2   30000 perm   7 sec   (4218 perm/sec)   p_kst 6.516667e-02   p_cons 1.079667e-01   p_joint 1.154667e-01

Outputting figure to mutsig2_images.part000000000013/ATP2A2.3_3227_30000_0.065167_0.10797_0.11547.png
                gene_name: ATP2A2
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.065 
        ci_ks_bounds_left: 0.062 
       ci_ks_bounds_right: 0.068 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 61 percent done.
ATP2A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.128017e-02	ci left: 1.485467e-01	ci right 1.628545e-01	k: 1556	n:10000
Cons ci ratio: 3.899868e-02	ci left: 4.926508e-01	ci right 5.123478e-01	k: 5025	n:10000
KS ci ratio: 1.113846e-01	ci left: 1.040292e-01	ci right 1.163989e-01	k: 1101	n:10000
ATP2A3   10000 perm   2 sec   (4853 perm/sec)   p_kst 1.101000e-01   p_cons 5.025000e-01   p_joint 1.556000e-01

Joint ci ratio: 7.159459e-02	ci left: 1.256636e-01	ci right 1.350442e-01	k: 2606	n:20000
Cons ci ratio: 2.760311e-02	ci left: 4.950957e-01	ci right 5.090037e-01	k: 10041	n:20000
KS ci ratio: 7.779378e-02	ci left: 1.082507e-01	ci right 1.170623e-01	k: 2252	n:20000
ATP2A3   20000 perm   5 sec   (4319 perm/sec)   p_kst 1.126000e-01   p_cons 5.020500e-01   p_joint 1.303000e-01

Outputting figure to mutsig2_images.part000000000013/ATP2A3.3_3295_20000_0.1126_0.50205_0.1303.png
                gene_name: ATP2A3
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 64 percent done.
ATP2B4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.779148e-02	ci left: 3.924695e-01	ci right 4.117875e-01	k: 4021	n:10000
Cons ci ratio: 1.460163e-02	ci left: 8.716295e-01	ci right 8.845493e-01	k: 8782	n:10000
KS ci ratio: 5.372743e-02	ci left: 3.379640e-01	ci right 3.567250e-01	k: 3473	n:10000
ATP2B4   10000 perm   2 sec   (4793 perm/sec)   p_kst 3.473000e-01   p_cons 8.782000e-01   p_joint 4.021000e-01

Outputting figure to mutsig2_images.part000000000013/ATP2B4.3_3880_10000_0.3473_0.8782_0.4021.png
                gene_name: ATP2B4
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 66 percent done.
ATP5A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.871639e-02	ci left: 1.294361e-01	ci right 1.429766e-01	k: 1361	n:10000
Cons ci ratio: 1.083685e-01	ci left: 1.093957e-01	ci right 1.220291e-01	k: 1156	n:10000
KS ci ratio: 9.103792e-02	ci left: 1.492334e-01	ci right 1.635673e-01	k: 1563	n:10000
ATP5A1   10000 perm   2 sec   (5930 perm/sec)   p_kst 1.563000e-01   p_cons 1.156000e-01   p_joint 1.361000e-01

Joint ci ratio: 6.701042e-02	ci left: 1.411823e-01	ci right 1.510208e-01	k: 2921	n:20000
Cons ci ratio: 7.541845e-02	ci left: 1.144940e-01	ci right 1.235171e-01	k: 2379	n:20000
KS ci ratio: 6.411960e-02	ci left: 1.523779e-01	ci right 1.625219e-01	k: 3148	n:20000
ATP5A1   20000 perm   4 sec   (5148 perm/sec)   p_kst 1.574000e-01   p_cons 1.189500e-01   p_joint 1.460500e-01

Outputting figure to mutsig2_images.part000000000013/ATP5A1.3_1710_20000_0.1574_0.11895_0.14605.png
                gene_name: ATP5A1
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 68 percent done.
ATP5C1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.514891e-02	ci left: 6.993822e-01	ci right 7.172963e-01	k: 7084	n:10000
KS ci ratio: 6.565505e-03	ci left: 9.694208e-01	ci right 9.758999e-01	k: 9728	n:10000
ATP5C1   10000 perm   2 sec   (6477 perm/sec)   p_kst 9.728000e-01   p_cons 7.084000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000013/ATP5C1.3_941_10000_0.9728_0.7084_1.png
                gene_name: ATP5C1
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
ATP6V0A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.687951e-02	ci left: 4.017322e-01	ci right 4.211194e-01	k: 4114	n:10000
Cons ci ratio: 1.133596e-01	ci left: 1.007141e-01	ci right 1.129160e-01	k: 1067	n:10000
KS ci ratio: 9.056855e-03	ci left: 9.449215e-01	ci right 9.536144e-01	k: 9494	n:10000
ATP6V0A4   10000 perm   2 sec   (5217 perm/sec)   p_kst 9.494000e-01   p_cons 1.067000e-01   p_joint 4.114000e-01

Joint ci ratio: 3.831151e-02	ci left: 3.369666e-01	ci right 3.501789e-01	k: 6871	n:20000
Cons ci ratio: 8.022195e-02	ci left: 1.023554e-01	ci right 1.109593e-01	k: 2132	n:20000
KS ci ratio: 6.270778e-03	ci left: 9.482772e-01	ci right 9.542908e-01	k: 19027	n:20000
ATP6V0A4   20000 perm   4 sec   (4638 perm/sec)   p_kst 9.513500e-01   p_cons 1.066000e-01   p_joint 3.435500e-01

Outputting figure to mutsig2_images.part000000000013/ATP6V0A4.3_2603_20000_0.95135_0.1066_0.34355.png
                gene_name: ATP6V0A4
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 73 percent done.
ATP6V1B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.837967e-02	ci left: 5.006505e-01	ci right 5.203434e-01	k: 5105	n:10000
KS ci ratio: 3.431475e-02	ci left: 5.563181e-01	ci right 5.758434e-01	k: 5661	n:10000
ATP6V1B1   10000 perm   2 sec   (5861 perm/sec)   p_kst 5.661000e-01   p_cons 5.105000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000013/ATP6V1B1.3_1598_10000_0.5661_0.5105_1.png
                gene_name: ATP6V1B1
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
ATG9A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.355961e-02	ci left: 5.672458e-01	ci right 5.867093e-01	k: 5770	n:10000
Cons ci ratio: 7.219193e-02	ci left: 2.194125e-01	ci right 2.359465e-01	k: 2276	n:10000
KS ci ratio: 5.026381e-02	ci left: 3.685825e-01	ci right 3.876885e-01	k: 3781	n:10000
ATG9A   10000 perm   2 sec   (5603 perm/sec)   p_kst 3.781000e-01   p_cons 2.276000e-01   p_joint 5.770000e-01

Outputting figure to mutsig2_images.part000000000013/ATG9A.2_2576_10000_0.3781_0.2276_0.577.png
                gene_name: ATG9A
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 77 percent done.
ATN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.290422e-03	ci left: 9.912756e-01	ci right 9.946275e-01	k: 9931	n:10000
KS ci ratio: 2.077635e-02	ci left: 7.724591e-01	ci right 7.887771e-01	k: 7807	n:10000
ATN1   10000 perm   2 sec   (5116 perm/sec)   p_kst 7.807000e-01   p_cons 9.931000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000013/ATN1.2_3609_10000_0.7807_0.9931_1.png
                gene_name: ATN1
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
ATP1B4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.781130e-02	ci left: 8.213734e-01	ci right 8.362346e-01	k: 8289	n:10000
Cons ci ratio: 2.704372e-02	ci left: 6.682378e-01	ci right 6.866587e-01	k: 6775	n:10000
KS ci ratio: 2.282482e-02	ci left: 7.381561e-01	ci right 7.553000e-01	k: 7468	n:10000
ATP1B4   10000 perm   2 sec   (6605 perm/sec)   p_kst 7.468000e-01   p_cons 6.775000e-01   p_joint 8.289000e-01

Outputting figure to mutsig2_images.part000000000013/ATP1B4.2_1106_10000_0.7468_0.6775_0.8289.png
                gene_name: ATP1B4
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 82 percent done.
ATP2B3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.023059e-02	ci left: 9.313350e-01	ci right 9.410090e-01	k: 9363	n:10000
Cons ci ratio: 2.281878e-02	ci left: 7.382572e-01	ci right 7.553988e-01	k: 7469	n:10000
KS ci ratio: 5.363278e-02	ci left: 3.387587e-01	ci right 3.575298e-01	k: 3481	n:10000
ATP2B3   10000 perm   2 sec   (4843 perm/sec)   p_kst 3.481000e-01   p_cons 7.469000e-01   p_joint 9.363000e-01

Outputting figure to mutsig2_images.part000000000013/ATP2B3.2_3901_10000_0.3481_0.7469_0.9363.png
                gene_name: ATP2B3
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 84 percent done.
ATP2C2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.243504e-03	ci left: 9.428427e-01	ci right 9.516945e-01	k: 9474	n:10000
Cons ci ratio: 1.522255e-02	ci left: 8.622295e-01	ci right 8.755548e-01	k: 8690	n:10000
KS ci ratio: 4.659998e-02	ci left: 4.046213e-01	ci right 4.240286e-01	k: 4143	n:10000
ATP2C2   10000 perm   2 sec   (5448 perm/sec)   p_kst 4.143000e-01   p_cons 8.690000e-01   p_joint 9.474000e-01

Outputting figure to mutsig2_images.part000000000013/ATP2C2.2_2949_10000_0.4143_0.869_0.9474.png
                gene_name: ATP2C2
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 86 percent done.
ATP4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.621882e-02	ci left: 5.295704e-01	ci right 5.492067e-01	k: 5394	n:10000
Cons ci ratio: 5.626217e-02	ci left: 3.175092e-01	ci right 3.359918e-01	k: 3267	n:10000
KS ci ratio: 1.904803e-02	ci left: 8.011560e-01	ci right 8.166636e-01	k: 8090	n:10000
ATP4B   10000 perm   1 sec   (6750 perm/sec)   p_kst 8.090000e-01   p_cons 3.267000e-01   p_joint 5.394000e-01

Outputting figure to mutsig2_images.part000000000013/ATP4B.2_904_10000_0.809_0.3267_0.5394.png
                gene_name: ATP4B
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 89 percent done.
ATP5B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.196217e-02	ci left: 3.531686e-01	ci right 3.721115e-01	k: 3626	n:10000
KS ci ratio: 1.715456e-02	ci left: 8.319533e-01	ci right 8.464485e-01	k: 8393	n:10000
ATP5B   10000 perm   2 sec   (6214 perm/sec)   p_kst 8.393000e-01   p_cons 3.626000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000013/ATP5B.2_1630_10000_0.8393_0.3626_1.png
                gene_name: ATP5B
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
ATP5G2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.697756e-03	ci left: 9.764223e-01	ci right 9.820937e-01	k: 9794	n:10000
Cons ci ratio: 1.524659e-01	ci left: 5.725512e-02	ci right 6.680198e-02	k: 619	n:10000
KS ci ratio: 8.988259e-02	ci left: 1.525700e-01	ci right 1.670288e-01	k: 1597	n:10000
ATP5G2   10000 perm   1 sec   (6840 perm/sec)   p_kst 1.597000e-01   p_cons 6.190000e-02   p_joint 9.794000e-01

Joint ci ratio: 4.294775e-03	ci left: 9.744093e-01	ci right 9.786506e-01	k: 19532	n:20000
Cons ci ratio: 1.094685e-01	ci left: 5.694265e-02	ci right 6.358591e-02	k: 1204	n:20000
KS ci ratio: 6.355757e-02	ci left: 1.546971e-01	ci right 1.649020e-01	k: 3195	n:20000
ATP5G2   20000 perm   3 sec   (5982 perm/sec)   p_kst 1.597500e-01   p_cons 6.020000e-02   p_joint 9.766000e-01

Joint ci ratio: 4.045448e-03	ci left: 9.670448e-01	ci right 9.709970e-01	k: 29072	n:30000
Cons ci ratio: 8.979171e-02	ci left: 5.704500e-02	ci right 6.244065e-02	k: 1791	n:30000
KS ci ratio: 5.195932e-02	ci left: 1.553073e-01	ci right 1.636254e-01	k: 4783	n:30000
ATP5G2   30000 perm   5 sec   (5664 perm/sec)   p_kst 1.594333e-01   p_cons 5.970000e-02   p_joint 9.690667e-01

Outputting figure to mutsig2_images.part000000000013/ATP5G2.2_617_30000_0.15943_0.0597_0.96907.png
                gene_name: ATP5G2
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.060 
      ci_cons_bounds_left: 0.057 
     ci_cons_bounds_right: 0.062 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.97 

Current progress: 93 percent done.
ATP6AP1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.537425e-02	ci left: 6.956504e-01	ci right 7.136303e-01	k: 7047	n:10000
Cons ci ratio: 2.773937e-02	ci left: 6.569607e-01	ci right 6.755424e-01	k: 6663	n:10000
KS ci ratio: 9.699204e-02	ci left: 1.335486e-01	ci right 1.472617e-01	k: 1403	n:10000
ATP6AP1L   10000 perm   1 sec   (6859 perm/sec)   p_kst 1.403000e-01   p_cons 6.663000e-01   p_joint 7.047000e-01

Outputting figure to mutsig2_images.part000000000013/ATP6AP1L.2_691_10000_0.1403_0.6663_0.7047.png
                gene_name: ATP6AP1L
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.71 

Current progress: 95 percent done.
ATP6V0D1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.774850e-02	ci left: 8.223902e-01	ci right 8.372171e-01	k: 8299	n:10000
KS ci ratio: 7.660225e-03	ci left: 9.594273e-01	ci right 9.668997e-01	k: 9633	n:10000
ATP6V0D1   10000 perm   2 sec   (6570 perm/sec)   p_kst 9.633000e-01   p_cons 8.299000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000013/ATP6V0D1.2_1088_10000_0.9633_0.8299_1.png
                gene_name: ATP6V0D1
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
ATP6V0D2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.336069e-02	ci left: 5.701540e-01	ci right 5.895994e-01	k: 5799	n:10000
Cons ci ratio: 4.819809e-03	ci left: 9.826368e-01	ci right 9.874746e-01	k: 9852	n:10000
KS ci ratio: 3.979435e-02	ci left: 4.825547e-01	ci right 5.022497e-01	k: 4924	n:10000
ATP6V0D2   10000 perm   1 sec   (6822 perm/sec)   p_kst 4.924000e-01   p_cons 9.852000e-01   p_joint 5.799000e-01

Outputting figure to mutsig2_images.part000000000013/ATP6V0D2.2_1085_10000_0.4924_0.9852_0.5799.png
                gene_name: ATP6V0D2
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000013
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 13 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1426>
Subject: Job 8003858: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1426>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000014> was used as the working directory.
Started at Sun Nov 11 15:03:44 2012
Results reported at Sun Nov 11 17:14:24 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000014.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000014.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 14  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000014.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   8551.28 sec.
    Max Memory :      4733 MB
    Max Swap   :      7166 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
14
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 14
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 14: processing genes 1177 - 1267
Calculating significance of each gene.
Using projection method.
1177	ATP6V1G3	1.401273e-01
1178	ATP6V1H	1.607277e-01
1179	ATP7A	2.568181e-01
1180	ATP7B	1
1181	ATP8A1	5.107761e-01
1182	ATP8A2	8.264068e-02
1183	ATP8B1	9.599693e-01
1184	ATP8B2	5.584448e-01
1185	ATP8B3	7.860642e-01
1186	ATP8B4	6.342963e-03
1187	ATP9A	9.725396e-01
1188	ATP9B	5.501992e-01
1189	ATPAF1	2.820972e-01
1190	ATPAF2	1
1191	ATPBD4	1.233826e-02
1192	ATPIF1	1
1193	ATR	9.128536e-01
1194	ATRIP	7.983274e-01
1195	ATRN	5.592168e-01
1196	ATRNL1	9.415977e-01
1197	ATRX	4.193216e-01
1198	ATXN1	6.924854e-01
1199	ATXN10	3.167013e-01
1200	ATXN2	6.911035e-01
1201	ATXN2L	6.523653e-01
1202	ATXN3	2.036154e-02
1203	ATXN3L	6.438535e-02
1204	ATXN7	5.032457e-01
1205	ATXN7L2	5.486217e-01
1206	ATXN7L3	3.055594e-01
1207	AUH	5.254481e-01
1208	AUP1	7.818852e-01
1209	AURKA	5.958729e-01
1210	AURKAIP1	1
1211	AURKB	1
1212	AURKC	4.921872e-01
1213	AUTS2	9.865052e-01
1214	AVEN	6.808110e-01
1215	AVIL	1
1216	AVL9	3.803918e-01
1217	AVP	1
1218	AVPI1	1
1219	AVPR1A	2.834439e-01
1220	AVPR1B	4.510196e-01
1221	AVPR2	6.922878e-02
1222	AWAT1	1
1223	AWAT2	1
1224	AXIN1	1
1225	AXIN2	1
1226	AXL	1
1227	AZGP1	5.987984e-01
1228	AZI1	7.767447e-01
1229	AZI2	3.122769e-01
1230	AZIN1	6.845103e-01
1231	AZU1	3.226977e-01
1232	B2M	3.428550e-02
1233	B3GALNT1	1
1234	B3GALNT2	4.230797e-01
1235	B3GALT1	1
1236	B3GALT2	2.547641e-01
1237	B3GALT4	8.004447e-01
1238	B3GALT5	1
1239	B3GALTL	1
1240	B3GAT1	1
1241	B3GAT2	1.826920e-01
1242	B3GAT3	1
1243	B3GNT1	1
1244	B3GNT2	6.915391e-01
1245	B3GNT3	9.169843e-02
1246	B3GNT4	6.944329e-01
1247	B3GNT5	1
1248	B3GNT6	4.371651e-01
1249	B3GNT7	6.874434e-01
1250	B3GNT8	1.298269e-01
1251	B3GNT9	3.194714e-01
1252	B3GNTL1	6.492240e-01
1253	B4GALNT1	1
1254	B4GALNT2	5.578033e-01
1255	B4GALNT3	8.914602e-01
1256	B4GALNT4	1
1257	B4GALT1	7.549947e-01
1258	B4GALT2	1
1259	B4GALT3	2.811995e-01
1260	B4GALT4	2.088137e-01
1261	B4GALT5	4.266210e-01
1262	B4GALT6	4.780707e-01
1263	B4GALT7	1
1264	B9D1	1
1265	B9D2	1
1266	BAALC	1
1267	BAAT	5.637069e-01
Done

Running MutSig 2:
Scatter job 14: processing genes 1177 - 1267
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ATR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.197598e-02	ci left: 1.784159e-01	ci right 1.937674e-01	k: 1860	n:10000
Cons ci ratio: 5.513094e-02	ci left: 3.264433e-01	ci right 3.450525e-01	k: 3357	n:10000
KS ci ratio: 1.027259e-01	ci left: 1.205332e-01	ci right 1.336849e-01	k: 1270	n:10000
ATR   10000 perm   4 sec   (2564 perm/sec)   p_kst 1.270000e-01   p_cons 3.357000e-01   p_joint 1.860000e-01

Joint ci ratio: 7.072369e-02	ci left: 1.284209e-01	ci right 1.378860e-01	k: 2662	n:20000
Cons ci ratio: 3.919853e-02	ci left: 3.267666e-01	ci right 3.398819e-01	k: 6666	n:20000
KS ci ratio: 7.199204e-02	ci left: 1.244328e-01	ci right 1.337753e-01	k: 2581	n:20000
ATR   20000 perm   12 sec   (1735 perm/sec)   p_kst 1.290500e-01   p_cons 3.333000e-01   p_joint 1.331000e-01

Outputting figure to mutsig2_images.part000000000014/ATR.13_8123_20000_0.12905_0.3333_0.1331.png
                gene_name: ATR
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 2 percent done.
ATRX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.531663e-02	ci left: 2.560727e-01	ci right 2.734646e-01	k: 2647	n:10000
Cons ci ratio: 3.858401e-03	ci left: 9.883990e-01	ci right 9.923073e-01	k: 9905	n:10000
KS ci ratio: 9.545513e-02	ci left: 1.373691e-01	ci right 1.512388e-01	k: 1442	n:10000
ATRX   10000 perm   3 sec   (3173 perm/sec)   p_kst 1.442000e-01   p_cons 9.905000e-01   p_joint 2.647000e-01

Outputting figure to mutsig2_images.part000000000014/ATRX.13_7619_10000_0.1442_0.9905_0.2647.png
                gene_name: ATRX
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 4 percent done.
ATP8B4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.374855e-02	ci left: 7.226973e-01	ci right 7.401677e-01	k: 7315	n:10000
Cons ci ratio: 2.277052e-02	ci left: 7.390659e-01	ci right 7.561897e-01	k: 7477	n:10000
KS ci ratio: 3.334015e-02	ci left: 5.704549e-01	ci right 5.898984e-01	k: 5802	n:10000
ATP8B4   10000 perm   2 sec   (4161 perm/sec)   p_kst 5.802000e-01   p_cons 7.477000e-01   p_joint 7.315000e-01

Outputting figure to mutsig2_images.part000000000014/ATP8B4.12_3687_10000_0.5802_0.7477_0.7315.png
                gene_name: ATP8B4
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 6 percent done.
ATP8A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.295265e-01	ci left: 7.844097e-02	ci right 8.940285e-02	k: 838	n:10000
Cons ci ratio: 7.037302e-02	ci left: 2.283967e-01	ci right 2.451569e-01	k: 2367	n:10000
KS ci ratio: 1.571106e-01	ci left: 5.397934e-02	ci right 6.327985e-02	k: 585	n:10000
ATP8A2   10000 perm   2 sec   (4009 perm/sec)   p_kst 5.850000e-02   p_cons 2.367000e-01   p_joint 8.380000e-02

Joint ci ratio: 1.023740e-01	ci left: 6.479305e-02	ci right 7.183308e-02	k: 1365	n:20000
Cons ci ratio: 5.038219e-02	ci left: 2.264616e-01	ci right 2.382163e-01	k: 4646	n:20000
KS ci ratio: 1.099059e-01	ci left: 5.650427e-02	ci right 6.312442e-02	k: 1195	n:20000
ATP8A2   20000 perm   5 sec   (3697 perm/sec)   p_kst 5.975000e-02   p_cons 2.323000e-01   p_joint 6.825000e-02

Joint ci ratio: 8.088809e-02	ci left: 6.965589e-02	ci right 7.556053e-02	k: 2177	n:30000
Cons ci ratio: 4.127008e-02	ci left: 2.264057e-01	ci right 2.359798e-01	k: 6935	n:30000
KS ci ratio: 8.987175e-02	ci left: 5.694711e-02	ci right 6.233856e-02	k: 1788	n:30000
ATP8A2   30000 perm   8 sec   (3567 perm/sec)   p_kst 5.960000e-02   p_cons 2.311667e-01   p_joint 7.256667e-02

Outputting figure to mutsig2_images.part000000000014/ATP8A2.11_3715_30000_0.0596_0.23117_0.072567.png
                gene_name: ATP8A2
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.060 
        ci_ks_bounds_left: 0.057 
       ci_ks_bounds_right: 0.062 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.073 
     ci_joint_bounds_left: 0.070 
    ci_joint_bounds_right: 0.076 

Current progress: 8 percent done.
ATP7A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.108443e-02	ci left: 6.042758e-01	ci right 6.234578e-01	k: 6139	n:10000
Cons ci ratio: 5.571689e-02	ci left: 3.217772e-01	ci right 3.403213e-01	k: 3310	n:10000
KS ci ratio: 1.791163e-02	ci left: 8.197466e-01	ci right 8.346623e-01	k: 8273	n:10000
ATP7A   10000 perm   2 sec   (4082 perm/sec)   p_kst 8.273000e-01   p_cons 3.310000e-01   p_joint 6.139000e-01

Outputting figure to mutsig2_images.part000000000014/ATP7A.9_4591_10000_0.8273_0.331_0.6139.png
                gene_name: ATP7A
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 10 percent done.
ATP8A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.733977e-01	ci left: 8.867630e-03	ci right 1.302464e-02	k: 108	n:10000
Cons ci ratio: 6.185349e-01	ci left: 2.774707e-03	ci right 5.327611e-03	k: 39	n:10000
KS ci ratio: 7.969522e-02	ci left: 1.869789e-01	ci right 2.025993e-01	k: 1947	n:10000
ATP8A1   10000 perm   2 sec   (4195 perm/sec)   p_kst 1.947000e-01   p_cons 3.900000e-03   p_joint 1.080000e-02

Joint ci ratio: 2.488949e-01	ci left: 1.072482e-02	ci right 1.381940e-02	k: 244	n:20000
Cons ci ratio: 4.401516e-01	ci left: 3.083972e-03	ci right 4.865021e-03	k: 78	n:20000
KS ci ratio: 5.769059e-02	ci left: 1.821114e-01	ci right 1.929796e-01	k: 3750	n:20000
ATP8A1   20000 perm   5 sec   (3833 perm/sec)   p_kst 1.875000e-01   p_cons 3.900000e-03   p_joint 1.220000e-02

Joint ci ratio: 2.204090e-01	ci left: 9.282959e-03	ci right 1.161331e-02	k: 312	n:30000
Cons ci ratio: 3.632525e-01	ci left: 3.165816e-03	ci right 4.599568e-03	k: 115	n:30000
KS ci ratio: 4.724136e-02	ci left: 1.822383e-01	ci right 1.910891e-01	k: 5599	n:30000
ATP8A1   30000 perm   8 sec   (3696 perm/sec)   p_kst 1.866333e-01   p_cons 3.833333e-03   p_joint 1.040000e-02

Joint ci ratio: 1.772839e-01	ci left: 1.100379e-02	ci right 1.316791e-02	k: 482	n:40000
Cons ci ratio: 3.227175e-01	ci left: 3.082802e-03	ci right 4.291016e-03	k: 146	n:40000
KS ci ratio: 4.003352e-02	ci left: 1.894649e-01	ci right 1.972297e-01	k: 7733	n:40000
ATP8A1   40000 perm   11 sec   (3587 perm/sec)   p_kst 1.933250e-01   p_cons 3.650000e-03   p_joint 1.205000e-02

Joint ci ratio: 1.397137e-01	ci left: 1.441612e-02	ci right 1.660066e-02	k: 774	n:50000
Cons ci ratio: 2.941203e-01	ci left: 3.019884e-03	ci right 4.079046e-03	k: 176	n:50000
KS ci ratio: 3.597674e-02	ci left: 1.884165e-01	ci right 1.953393e-01	k: 9593	n:50000
ATP8A1   50000 perm   14 sec   (3497 perm/sec)   p_kst 1.918600e-01   p_cons 3.520000e-03   p_joint 1.548000e-02

Joint ci ratio: 1.540002e-01	ci left: 9.860094e-03	ci right 1.152108e-02	k: 640	n:60000
Cons ci ratio: 2.637992e-01	ci left: 3.183279e-03	ci right 4.165693e-03	k: 219	n:60000
KS ci ratio: 3.288953e-02	ci left: 1.882754e-01	ci right 1.945878e-01	k: 11485	n:60000
ATP8A1   60000 perm   17 sec   (3431 perm/sec)   p_kst 1.914167e-01   p_cons 3.650000e-03   p_joint 1.066667e-02

Joint ci ratio: 1.805940e-01	ci left: 6.081755e-03	ci right 7.302534e-03	k: 467	n:70000
Cons ci ratio: 2.431242e-01	ci left: 3.250342e-03	ci right 4.162987e-03	k: 258	n:70000
KS ci ratio: 3.123093e-02	ci left: 1.808374e-01	ci right 1.865889e-01	k: 12859	n:70000
ATP8A1   70000 perm   21 sec   (3368 perm/sec)   p_kst 1.837000e-01   p_cons 3.685714e-03   p_joint 6.671429e-03

Joint ci ratio: 1.610619e-01	ci left: 6.757776e-03	ci right 7.953368e-03	k: 587	n:80000
Cons ci ratio: 2.293747e-01	ci left: 3.220383e-03	ci right 4.066242e-03	k: 290	n:80000
KS ci ratio: 2.915695e-02	ci left: 1.816060e-01	ci right 1.869919e-01	k: 14743	n:80000
ATP8A1   80000 perm   24 sec   (3311 perm/sec)   p_kst 1.842875e-01   p_cons 3.625000e-03   p_joint 7.337500e-03

Joint ci ratio: 1.557526e-01	ci left: 6.444329e-03	ci right 7.543364e-03	k: 628	n:90000
Cons ci ratio: 2.160498e-01	ci left: 3.250762e-03	ci right 4.048423e-03	k: 327	n:90000
KS ci ratio: 2.744281e-02	ci left: 1.822689e-01	ci right 1.873515e-01	k: 16632	n:90000
ATP8A1   90000 perm   28 sec   (3260 perm/sec)   p_kst 1.848000e-01   p_cons 3.633333e-03   p_joint 6.977778e-03

Joint ci ratio: 1.360785e-01	ci left: 7.669683e-03	ci right 8.799120e-03	k: 822	n:100000
Cons ci ratio: 2.059420e-01	ci left: 3.238254e-03	ci right 3.990990e-03	k: 360	n:100000
KS ci ratio: 2.599841e-02	ci left: 1.828164e-01	ci right 1.876419e-01	k: 18522	n:100000
ATP8A1   100000 perm   31 sec   (3209 perm/sec)   p_kst 1.852200e-01   p_cons 3.600000e-03   p_joint 8.220000e-03

Joint ci ratio: 1.389650e-01	ci left: 6.682520e-03	ci right 7.689181e-03	k: 789	n:110000
Cons ci ratio: 1.968813e-01	ci left: 3.237376e-03	ci right 3.952827e-03	k: 394	n:110000
KS ci ratio: 2.480667e-02	ci left: 1.827091e-01	ci right 1.873075e-01	k: 20350	n:110000
ATP8A1   110000 perm   35 sec   (3163 perm/sec)   p_kst 1.850000e-01   p_cons 3.581818e-03   p_joint 7.172727e-03

Joint ci ratio: 1.331905e-01	ci left: 6.689124e-03	ci right 7.651591e-03	k: 859	n:120000
Cons ci ratio: 1.907129e-01	ci left: 3.173740e-03	ci right 3.850604e-03	k: 420	n:120000
KS ci ratio: 2.379010e-02	ci left: 1.823088e-01	ci right 1.867064e-01	k: 22140	n:120000
ATP8A1   120000 perm   39 sec   (3116 perm/sec)   p_kst 1.845000e-01   p_cons 3.500000e-03   p_joint 7.158333e-03

Joint ci ratio: 1.169427e-01	ci left: 8.067854e-03	ci right 9.077327e-03	k: 1113	n:130000
Cons ci ratio: 1.830466e-01	ci left: 3.193580e-03	ci right 3.844261e-03	k: 456	n:130000
KS ci ratio: 2.289430e-02	ci left: 1.819045e-01	ci right 1.861250e-01	k: 23921	n:130000
ATP8A1   130000 perm   42 sec   (3073 perm/sec)   p_kst 1.840077e-01   p_cons 3.507692e-03   p_joint 8.561538e-03

Joint ci ratio: 1.167151e-01	ci left: 7.526126e-03	ci right 8.465852e-03	k: 1118	n:140000
Cons ci ratio: 1.771399e-01	ci left: 3.176913e-03	ci right 3.801073e-03	k: 487	n:140000
KS ci ratio: 2.200873e-02	ci left: 1.826987e-01	ci right 1.867715e-01	k: 25862	n:140000
ATP8A1   140000 perm   46 sec   (3029 perm/sec)   p_kst 1.847286e-01   p_cons 3.478571e-03   p_joint 7.985714e-03

Joint ci ratio: 1.048063e-01	ci left: 8.755480e-03	ci right 9.730298e-03	k: 1385	n:150000
Cons ci ratio: 1.719367e-01	ci left: 3.156380e-03	ci right 3.756400e-03	k: 517	n:150000
KS ci ratio: 2.127204e-02	ci left: 1.826328e-01	ci right 1.865661e-01	k: 27689	n:150000
ATP8A1   150000 perm   50 sec   (2989 perm/sec)   p_kst 1.845933e-01   p_cons 3.446667e-03   p_joint 9.233333e-03

Joint ci ratio: 1.024764e-01	ci left: 8.597857e-03	ci right 9.532562e-03	k: 1449	n:160000
Cons ci ratio: 1.664065e-01	ci left: 3.168597e-03	ci right 3.749625e-03	k: 552	n:160000
KS ci ratio: 2.059528e-02	ci left: 1.827140e-01	ci right 1.865224e-01	k: 29538	n:160000
ATP8A1   160000 perm   54 sec   (2948 perm/sec)   p_kst 1.846125e-01   p_cons 3.450000e-03   p_joint 9.056250e-03

Joint ci ratio: 9.999556e-02	ci left: 8.510621e-03	ci right 9.412127e-03	k: 1522	n:170000
Cons ci ratio: 1.620707e-01	ci left: 3.151424e-03	ci right 3.712779e-03	k: 582	n:170000
KS ci ratio: 1.997146e-02	ci left: 1.829047e-01	ci right 1.866002e-01	k: 31407	n:170000
ATP8A1   170000 perm   58 sec   (2909 perm/sec)   p_kst 1.847471e-01   p_cons 3.423529e-03   p_joint 8.952941e-03

Joint ci ratio: 9.802790e-02	ci left: 8.373694e-03	ci right 9.242237e-03	k: 1584	n:180000
Cons ci ratio: 1.569054e-01	ci left: 3.184370e-03	ci right 3.731814e-03	k: 621	n:180000
KS ci ratio: 1.939823e-02	ci left: 1.831199e-01	ci right 1.867124e-01	k: 33284	n:180000
ATP8A1   180000 perm   63 sec   (2872 perm/sec)   p_kst 1.849111e-01   p_cons 3.450000e-03   p_joint 8.800000e-03

Joint ci ratio: 1.018101e-01	ci left: 7.347762e-03	ci right 8.141052e-03	k: 1470	n:190000
Cons ci ratio: 1.533731e-01	ci left: 3.163475e-03	ci right 3.693959e-03	k: 650	n:190000
KS ci ratio: 1.884669e-02	ci left: 1.837124e-01	ci right 1.872130e-01	k: 35237	n:190000
ATP8A1   190000 perm   67 sec   (2835 perm/sec)   p_kst 1.854579e-01   p_cons 3.421053e-03   p_joint 7.736842e-03

Joint ci ratio: 9.953786e-02	ci left: 7.311807e-03	ci right 8.082565e-03	k: 1538	n:200000
Cons ci ratio: 1.491910e-01	ci left: 3.183302e-03	ci right 3.701255e-03	k: 687	n:200000
KS ci ratio: 1.834630e-02	ci left: 1.841373e-01	ci right 1.875518e-01	k: 37168	n:200000
ATP8A1   200000 perm   71 sec   (2798 perm/sec)   p_kst 1.858400e-01   p_cons 3.435000e-03   p_joint 7.690000e-03

Joint ci ratio: 9.981793e-02	ci left: 6.926411e-03	ci right 7.658717e-03	k: 1530	n:210000
Cons ci ratio: 1.455348e-01	ci left: 3.192239e-03	ci right 3.697811e-03	k: 722	n:210000
KS ci ratio: 1.791839e-02	ci left: 1.839391e-01	ci right 1.872695e-01	k: 38976	n:210000
ATP8A1   210000 perm   76 sec   (2763 perm/sec)   p_kst 1.856000e-01   p_cons 3.438095e-03   p_joint 7.285714e-03

Joint ci ratio: 9.576158e-02	ci left: 7.196951e-03	ci right 7.925204e-03	k: 1662	n:220000
Cons ci ratio: 1.425128e-01	ci left: 3.182967e-03	ci right 3.675714e-03	k: 753	n:220000
KS ci ratio: 1.750459e-02	ci left: 1.840090e-01	ci right 1.872629e-01	k: 40839	n:220000
ATP8A1   220000 perm   81 sec   (2729 perm/sec)   p_kst 1.856318e-01   p_cons 3.422727e-03   p_joint 7.554545e-03

Joint ci ratio: 9.413774e-02	ci left: 7.130214e-03	ci right 7.838804e-03	k: 1720	n:230000
Cons ci ratio: 1.394045e-01	ci left: 3.187191e-03	ci right 3.668936e-03	k: 787	n:230000
KS ci ratio: 1.711352e-02	ci left: 1.841559e-01	ci right 1.873390e-01	k: 42721	n:230000
ATP8A1   230000 perm   85 sec   (2696 perm/sec)   p_kst 1.857435e-01   p_cons 3.421739e-03   p_joint 7.478261e-03

Joint ci ratio: 9.426293e-02	ci left: 6.816796e-03	ci right 7.495188e-03	k: 1716	n:240000
Cons ci ratio: 1.364911e-01	ci left: 3.191169e-03	ci right 3.662616e-03	k: 821	n:240000
KS ci ratio: 1.674892e-02	ci left: 1.842664e-01	ci right 1.873829e-01	k: 44597	n:240000
ATP8A1   240000 perm   90 sec   (2665 perm/sec)   p_kst 1.858208e-01   p_cons 3.420833e-03   p_joint 7.150000e-03

Joint ci ratio: 9.016400e-02	ci left: 7.165519e-03	ci right 7.845974e-03	k: 1875	n:250000
Cons ci ratio: 1.335184e-01	ci left: 3.206526e-03	ci right 3.669105e-03	k: 858	n:250000
KS ci ratio: 1.639714e-02	ci left: 1.845442e-01	ci right 1.875991e-01	k: 46517	n:250000
ATP8A1   250000 perm   95 sec   (2633 perm/sec)   p_kst 1.860680e-01   p_cons 3.432000e-03   p_joint 7.500000e-03

Joint ci ratio: 8.692260e-02	ci left: 7.424027e-03	ci right 8.102399e-03	k: 2017	n:260000
Cons ci ratio: 1.306588e-01	ci left: 3.224524e-03	ci right 3.678964e-03	k: 896	n:260000
KS ci ratio: 1.607091e-02	ci left: 1.847206e-01	ci right 1.877171e-01	k: 48416	n:260000
ATP8A1   260000 perm   100 sec   (2602 perm/sec)   p_kst 1.862154e-01   p_cons 3.446154e-03   p_joint 7.757692e-03

Joint ci ratio: 8.539256e-02	ci left: 7.413606e-03	ci right 8.078507e-03	k: 2090	n:270000
Cons ci ratio: 1.279753e-01	ci left: 3.241287e-03	ci right 3.687995e-03	k: 934	n:270000
KS ci ratio: 1.576995e-02	ci left: 1.847591e-01	ci right 1.876995e-01	k: 50281	n:270000
ATP8A1   270000 perm   105 sec   (2570 perm/sec)   p_kst 1.862259e-01   p_cons 3.459259e-03   p_joint 7.740741e-03

Joint ci ratio: 8.370699e-02	ci left: 7.445992e-03	ci right 8.099972e-03	k: 2175	n:280000
Cons ci ratio: 1.260369e-01	ci left: 3.225806e-03	ci right 3.663143e-03	k: 963	n:280000
KS ci ratio: 1.548018e-02	ci left: 1.848949e-01	ci right 1.877830e-01	k: 52174	n:280000
ATP8A1   280000 perm   110 sec   (2542 perm/sec)   p_kst 1.863357e-01   p_cons 3.439286e-03   p_joint 7.767857e-03

Joint ci ratio: 8.432563e-02	ci left: 7.084528e-03	ci right 7.711584e-03	k: 2144	n:290000
Cons ci ratio: 1.240588e-01	ci left: 3.218123e-03	ci right 3.647068e-03	k: 994	n:290000
KS ci ratio: 1.519926e-02	ci left: 1.851525e-01	ci right 1.879917e-01	k: 54105	n:290000
ATP8A1   290000 perm   115 sec   (2513 perm/sec)   p_kst 1.865690e-01   p_cons 3.427586e-03   p_joint 7.393103e-03

Joint ci ratio: 7.489043e-02	ci left: 8.710937e-03	ci right 9.391931e-03	k: 2714	n:300000
Cons ci ratio: 1.225912e-01	ci left: 3.188381e-03	ci right 3.607969e-03	k: 1018	n:300000
KS ci ratio: 1.493014e-02	ci left: 1.854532e-01	ci right 1.882462e-01	k: 56054	n:300000
ATP8A1   300000 perm   121 sec   (2485 perm/sec)   p_kst 1.868467e-01   p_cons 3.393333e-03   p_joint 9.046667e-03

Joint ci ratio: 7.937357e-02	ci left: 7.496477e-03	ci right 8.119229e-03	k: 2419	n:310000
Cons ci ratio: 1.208842e-01	ci left: 3.176228e-03	ci right 3.587980e-03	k: 1047	n:310000
KS ci ratio: 1.468104e-02	ci left: 1.856062e-01	ci right 1.883545e-01	k: 57963	n:310000
ATP8A1   310000 perm   126 sec   (2458 perm/sec)   p_kst 1.869774e-01   p_cons 3.377419e-03   p_joint 7.803226e-03

Joint ci ratio: 7.821926e-02	ci left: 7.482776e-03	ci right 8.094938e-03	k: 2491	n:320000
Cons ci ratio: 1.191355e-01	ci left: 3.170938e-03	ci right 3.575639e-03	k: 1078	n:320000
KS ci ratio: 1.446393e-02	ci left: 1.853325e-01	ci right 1.880357e-01	k: 59738	n:320000
ATP8A1   320000 perm   132 sec   (2432 perm/sec)   p_kst 1.866812e-01   p_cons 3.368750e-03   p_joint 7.784375e-03

Joint ci ratio: 7.789853e-02	ci left: 7.318395e-03	ci right 7.914543e-03	k: 2512	n:330000
Cons ci ratio: 1.177804e-01	ci left: 3.148359e-03	ci right 3.545290e-03	k: 1103	n:330000
KS ci ratio: 1.424421e-02	ci left: 1.853294e-01	ci right 1.879912e-01	k: 61597	n:330000
ATP8A1   330000 perm   137 sec   (2406 perm/sec)   p_kst 1.866576e-01   p_cons 3.342424e-03   p_joint 7.612121e-03

Joint ci ratio: 7.811112e-02	ci left: 7.065623e-03	ci right 7.642821e-03	k: 2499	n:340000
Cons ci ratio: 1.162641e-01	ci left: 3.138557e-03	ci right 3.528808e-03	k: 1132	n:340000
KS ci ratio: 1.403176e-02	ci left: 1.853797e-01	ci right 1.880021e-01	k: 63474	n:340000
ATP8A1   340000 perm   143 sec   (2380 perm/sec)   p_kst 1.866882e-01   p_cons 3.329412e-03   p_joint 7.350000e-03

Joint ci ratio: 7.601902e-02	ci left: 7.253264e-03	ci right 7.829220e-03	k: 2638	n:350000
Cons ci ratio: 1.138745e-01	ci left: 3.182084e-03	ci right 3.569068e-03	k: 1180	n:350000
KS ci ratio: 1.383323e-02	ci left: 1.853247e-01	ci right 1.879090e-01	k: 65315	n:350000
ATP8A1   350000 perm   149 sec   (2355 perm/sec)   p_kst 1.866143e-01   p_cons 3.371429e-03   p_joint 7.537143e-03

Joint ci ratio: 7.533986e-02	ci left: 7.182585e-03	ci right 7.747609e-03	k: 2686	n:360000
Cons ci ratio: 1.122699e-01	ci left: 3.185466e-03	ci right 3.567041e-03	k: 1214	n:360000
KS ci ratio: 1.363690e-02	ci left: 1.854061e-01	ci right 1.879545e-01	k: 67204	n:360000
ATP8A1   360000 perm   155 sec   (2330 perm/sec)   p_kst 1.866778e-01   p_cons 3.372222e-03   p_joint 7.461111e-03

Joint ci ratio: 7.418820e-02	ci left: 7.211247e-03	ci right 7.769481e-03	k: 2770	n:370000
Cons ci ratio: 1.106867e-01	ci left: 3.191330e-03	ci right 3.567865e-03	k: 1249	n:370000
KS ci ratio: 1.345336e-02	ci left: 1.853781e-01	ci right 1.878916e-01	k: 69054	n:370000
ATP8A1   370000 perm   160 sec   (2306 perm/sec)   p_kst 1.866324e-01   p_cons 3.375676e-03   p_joint 7.486486e-03

Joint ci ratio: 7.306201e-02	ci left: 7.243631e-03	ci right 7.795498e-03	k: 2856	n:380000
Cons ci ratio: 1.095113e-01	ci left: 3.176442e-03	ci right 3.546984e-03	k: 1276	n:380000
KS ci ratio: 1.327268e-02	ci left: 1.854516e-01	ci right 1.879321e-01	k: 70942	n:380000
ATP8A1   380000 perm   167 sec   (2281 perm/sec)   p_kst 1.866895e-01   p_cons 3.357895e-03   p_joint 7.515789e-03

Joint ci ratio: 7.258441e-02	ci left: 7.153546e-03	ci right 7.694836e-03	k: 2894	n:390000
Cons ci ratio: 1.084561e-01	ci left: 3.157348e-03	ci right 3.521887e-03	k: 1301	n:390000
KS ci ratio: 1.310837e-02	ci left: 1.853067e-01	ci right 1.877543e-01	k: 72746	n:390000
ATP8A1   390000 perm   173 sec   (2257 perm/sec)   p_kst 1.865282e-01   p_cons 3.335897e-03   p_joint 7.420513e-03

Joint ci ratio: 7.166201e-02	ci left: 7.158827e-03	ci right 7.693346e-03	k: 2969	n:400000
Cons ci ratio: 1.074714e-01	ci left: 3.136792e-03	ci right 3.495462e-03	k: 1325	n:400000
KS ci ratio: 1.293563e-02	ci left: 1.855059e-01	ci right 1.879236e-01	k: 74685	n:400000
ATP8A1   400000 perm   179 sec   (2234 perm/sec)   p_kst 1.867125e-01   p_cons 3.312500e-03   p_joint 7.422500e-03

Joint ci ratio: 7.020702e-02	ci left: 7.281312e-03	ci right 7.813488e-03	k: 3093	n:410000
Cons ci ratio: 1.062370e-01	ci left: 3.133874e-03	ci right 3.487837e-03	k: 1356	n:410000
KS ci ratio: 1.277641e-02	ci left: 1.855326e-01	ci right 1.879206e-01	k: 76557	n:410000
ATP8A1   410000 perm   185 sec   (2210 perm/sec)   p_kst 1.867244e-01   p_cons 3.307317e-03   p_joint 7.543902e-03

Joint ci ratio: 6.662948e-02	ci left: 7.901371e-03	ci right 8.448304e-03	k: 3432	n:420000
Cons ci ratio: 1.050442e-01	ci left: 3.131117e-03	ci right 3.480553e-03	k: 1387	n:420000
KS ci ratio: 1.262748e-02	ci left: 1.854489e-01	ci right 1.878078e-01	k: 78383	n:420000
ATP8A1   420000 perm   192 sec   (2189 perm/sec)   p_kst 1.866262e-01   p_cons 3.302381e-03   p_joint 8.171429e-03

Joint ci ratio: 6.616155e-02	ci left: 7.829670e-03	ci right 8.367688e-03	k: 3481	n:430000
Cons ci ratio: 1.039642e-01	ci left: 3.123979e-03	ci right 3.468814e-03	k: 1416	n:430000
KS ci ratio: 1.247646e-02	ci left: 1.855432e-01	ci right 1.878750e-01	k: 80284	n:430000
ATP8A1   430000 perm   198 sec   (2167 perm/sec)   p_kst 1.867070e-01   p_cons 3.293023e-03   p_joint 8.095349e-03

Joint ci ratio: 6.068069e-02	ci left: 9.110257e-03	ci right 9.682595e-03	k: 4133	n:440000
Cons ci ratio: 1.028812e-01	ci left: 3.119397e-03	ci right 3.459923e-03	k: 1446	n:440000
KS ci ratio: 1.233693e-02	ci left: 1.854815e-01	ci right 1.877862e-01	k: 82118	n:440000
ATP8A1   440000 perm   205 sec   (2146 perm/sec)   p_kst 1.866318e-01   p_cons 3.286364e-03   p_joint 9.393182e-03

Joint ci ratio: 6.257855e-02	ci left: 8.373839e-03	ci right 8.916960e-03	k: 3889	n:450000
Cons ci ratio: 1.020047e-01	ci left: 3.104208e-03	ci right 3.440016e-03	k: 1471	n:450000
KS ci ratio: 1.219670e-02	ci left: 1.855535e-01	ci right 1.878327e-01	k: 84011	n:450000
ATP8A1   450000 perm   212 sec   (2126 perm/sec)   p_kst 1.866911e-01   p_cons 3.268889e-03   p_joint 8.642222e-03

Joint ci ratio: 6.185888e-02	ci left: 8.386549e-03	ci right 8.924015e-03	k: 3980	n:460000
Cons ci ratio: 1.009138e-01	ci left: 3.104525e-03	ci right 3.436563e-03	k: 1503	n:460000
KS ci ratio: 1.206909e-02	ci left: 1.854230e-01	ci right 1.876766e-01	k: 85812	n:460000
ATP8A1   460000 perm   218 sec   (2106 perm/sec)   p_kst 1.865478e-01   p_cons 3.267391e-03   p_joint 8.652174e-03

Joint ci ratio: 6.162311e-02	ci left: 8.273036e-03	ci right 8.801134e-03	k: 4011	n:470000
Cons ci ratio: 1.000862e-01	ci left: 3.090325e-03	ci right 3.417974e-03	k: 1528	n:470000
KS ci ratio: 1.193788e-02	ci left: 1.854892e-01	ci right 1.877189e-01	k: 87703	n:470000
ATP8A1   470000 perm   225 sec   (2086 perm/sec)   p_kst 1.866021e-01   p_cons 3.251064e-03   p_joint 8.534043e-03

Joint ci ratio: 6.103315e-02	ci left: 8.260688e-03	ci right 8.782771e-03	k: 4089	n:480000
Cons ci ratio: 9.911882e-02	ci left: 3.086886e-03	ci right 3.410823e-03	k: 1558	n:480000
KS ci ratio: 1.180534e-02	ci left: 1.856941e-01	ci right 1.879013e-01	k: 89662	n:480000
ATP8A1   480000 perm   232 sec   (2067 perm/sec)   p_kst 1.867958e-01   p_cons 3.245833e-03   p_joint 8.518750e-03

Outputting figure to mutsig2_images.part000000000014/ATP8A1.9_3721_480000_0.1868_0.0032458_0.0085188.png
                gene_name: ATP8A1
               theta_stop: 0.099 
                    nperm: 480000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.0032 
      ci_cons_bounds_left: 0.0031 
     ci_cons_bounds_right: 0.0034 
                  p_joint: 0.0085 
     ci_joint_bounds_left: 0.0083 
    ci_joint_bounds_right: 0.0088 

Current progress: 12 percent done.
ATRNL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.157826e-02	ci left: 5.967448e-01	ci right 6.159932e-01	k: 6064	n:10000
Cons ci ratio: 5.987856e-02	ci left: 2.909285e-01	ci right 3.089882e-01	k: 2999	n:10000
KS ci ratio: 3.981823e-02	ci left: 4.822549e-01	ci right 5.019497e-01	k: 4921	n:10000
ATRNL1   10000 perm   2 sec   (4077 perm/sec)   p_kst 4.921000e-01   p_cons 2.999000e-01   p_joint 6.064000e-01

Outputting figure to mutsig2_images.part000000000014/ATRNL1.8_4256_10000_0.4921_0.2999_0.6064.png
                gene_name: ATRNL1
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 14 percent done.
ATP8B2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.283636e-02	ci left: 5.778774e-01	ci right 5.972716e-01	k: 5876	n:10000
Cons ci ratio: 5.167123e-02	ci left: 3.557534e-01	ci right 3.747251e-01	k: 3652	n:10000
KS ci ratio: 3.364216e-02	ci left: 5.660425e-01	ci right 5.855133e-01	k: 5758	n:10000
ATP8B2   10000 perm   2 sec   (4302 perm/sec)   p_kst 5.758000e-01   p_cons 3.652000e-01   p_joint 5.876000e-01

Outputting figure to mutsig2_images.part000000000014/ATP8B2.7_3914_10000_0.5758_0.3652_0.5876.png
                gene_name: ATP8B2
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 16 percent done.
ATP8B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.531941e-02	ci left: 6.965581e-01	ci right 7.145221e-01	k: 7056	n:10000
Cons ci ratio: 6.633841e-02	ci left: 2.501382e-01	ci right 2.674026e-01	k: 2587	n:10000
KS ci ratio: 2.168413e-02	ci left: 7.572717e-01	ci right 7.739733e-01	k: 7657	n:10000
ATP8B1   10000 perm   2 sec   (4691 perm/sec)   p_kst 7.657000e-01   p_cons 2.587000e-01   p_joint 7.056000e-01

Outputting figure to mutsig2_images.part000000000014/ATP8B1.5_3864_10000_0.7657_0.2587_0.7056.png
                gene_name: ATP8B1
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.71 

Current progress: 18 percent done.
ATP9B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.979036e-02	ci left: 7.888790e-01	ci right 8.047477e-01	k: 7969	n:10000
Cons ci ratio: 4.988129e-02	ci left: 3.721640e-01	ci right 3.913049e-01	k: 3817	n:10000
KS ci ratio: 2.427486e-02	ci left: 7.139129e-01	ci right 7.315572e-01	k: 7228	n:10000
ATP9B   10000 perm   2 sec   (4605 perm/sec)   p_kst 7.228000e-01   p_cons 3.817000e-01   p_joint 7.969000e-01

Outputting figure to mutsig2_images.part000000000014/ATP9B.5_3564_10000_0.7228_0.3817_0.7969.png
                gene_name: ATP9B
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 20 percent done.
ATRN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.950997e-02	ci left: 2.935057e-01	ci right 3.116095e-01	k: 3025	n:10000
Cons ci ratio: 1.165621e-01	ci left: 9.564778e-02	ci right 1.075854e-01	k: 1015	n:10000
KS ci ratio: 4.037172e-02	ci left: 4.753600e-01	ci right 4.950486e-01	k: 4852	n:10000
ATRN   10000 perm   2 sec   (4278 perm/sec)   p_kst 4.852000e-01   p_cons 1.015000e-01   p_joint 3.025000e-01

Joint ci ratio: 4.585633e-02	ci left: 2.614240e-01	ci right 2.737436e-01	k: 5351	n:20000
Cons ci ratio: 8.217607e-02	ci left: 9.793682e-02	ci right 1.063792e-01	k: 2042	n:20000
KS ci ratio: 2.871844e-02	ci left: 4.753029e-01	ci right 4.892023e-01	k: 9645	n:20000
ATRN   20000 perm   5 sec   (3842 perm/sec)   p_kst 4.822500e-01   p_cons 1.021000e-01   p_joint 2.675500e-01

Outputting figure to mutsig2_images.part000000000014/ATRN.5_4428_20000_0.48225_0.1021_0.26755.png
                gene_name: ATRN
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.098 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 22 percent done.
ATXN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.287024e-02	ci left: 5.773758e-01	ci right 5.967734e-01	k: 5871	n:10000
Cons ci ratio: 6.321963e-02	ci left: 2.688388e-01	ci right 2.864909e-01	k: 2776	n:10000
KS ci ratio: 2.149680e-02	ci left: 7.604092e-01	ci right 7.770340e-01	k: 7688	n:10000
ATXN3   10000 perm   2 sec   (5768 perm/sec)   p_kst 7.688000e-01   p_cons 2.776000e-01   p_joint 5.871000e-01

Outputting figure to mutsig2_images.part000000000014/ATXN3.5_1130_10000_0.7688_0.2776_0.5871.png
                gene_name: ATXN3
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 24 percent done.
ATP9A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.401013e-02	ci left: 4.325336e-01	ci right 4.521000e-01	k: 4423	n:10000
KS ci ratio: 1.808054e-02	ci left: 8.170019e-01	ci right 8.320086e-01	k: 8246	n:10000
ATP9A   10000 perm   2 sec   (4825 perm/sec)   p_kst 8.246000e-01   p_cons 4.423000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000014/ATP9A.4_3256_10000_0.8246_0.4423_1.png
                gene_name: ATP9A
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 25 percent done.
ATPBD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.920630e-02	ci left: 6.335189e-01	ci right 6.523977e-01	k: 6430	n:10000
Cons ci ratio: 4.621809e-02	ci left: 4.086069e-01	ci right 4.280407e-01	k: 4183	n:10000
KS ci ratio: 2.494214e-02	ci left: 7.028121e-01	ci right 7.206644e-01	k: 7118	n:10000
ATPBD4   10000 perm   2 sec   (6031 perm/sec)   p_kst 7.118000e-01   p_cons 4.183000e-01   p_joint 6.430000e-01

Outputting figure to mutsig2_images.part000000000014/ATPBD4.4_1030_10000_0.7118_0.4183_0.643.png
                gene_name: ATPBD4
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 27 percent done.
ATXN2L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.132093e-02	ci left: 6.006606e-01	ci right 6.198751e-01	k: 6103	n:10000
Cons ci ratio: 5.621107e-02	ci left: 3.179062e-01	ci right 3.363946e-01	k: 3271	n:10000
KS ci ratio: 3.612419e-02	ci left: 5.308720e-01	ci right 5.505042e-01	k: 5407	n:10000
ATXN2L   10000 perm   2 sec   (4900 perm/sec)   p_kst 5.407000e-01   p_cons 3.271000e-01   p_joint 6.103000e-01

Outputting figure to mutsig2_images.part000000000014/ATXN2L.4_3552_10000_0.5407_0.3271_0.6103.png
                gene_name: ATXN2L
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 29 percent done.
ATXN7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.982218e-02	ci left: 1.268913e-01	ci right 1.403229e-01	k: 1335	n:10000
Cons ci ratio: 6.106854e-02	ci left: 2.828028e-01	ci right 3.007187e-01	k: 2917	n:10000
KS ci ratio: 1.214091e-01	ci left: 8.864084e-02	ci right 1.001967e-01	k: 943	n:10000
ATXN7   10000 perm   2 sec   (5086 perm/sec)   p_kst 9.430000e-02   p_cons 2.917000e-01   p_joint 1.335000e-01

Joint ci ratio: 7.638710e-02	ci left: 1.118880e-01	ci right 1.208239e-01	k: 2326	n:20000
Cons ci ratio: 4.448147e-02	ci left: 2.734371e-01	ci right 2.859270e-01	k: 5593	n:20000
KS ci ratio: 8.821853e-02	ci left: 8.587260e-02	ci right 9.384710e-02	k: 1796	n:20000
ATXN7   20000 perm   4 sec   (4573 perm/sec)   p_kst 8.980000e-02   p_cons 2.796500e-01   p_joint 1.163000e-01

Outputting figure to mutsig2_images.part000000000014/ATXN7.4_2954_20000_0.0898_0.27965_0.1163.png
                gene_name: ATXN7
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.090 
        ci_ks_bounds_left: 0.086 
       ci_ks_bounds_right: 0.094 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 31 percent done.
AVPR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.567918e-02	ci left: 3.220751e-01	ci right 3.406233e-01	k: 3313	n:10000
Cons ci ratio: 3.956422e-02	ci left: 4.854532e-01	ci right 5.051496e-01	k: 4953	n:10000
KS ci ratio: 7.660662e-02	ci left: 1.994895e-01	ci right 2.154812e-01	k: 2074	n:10000
AVPR2   10000 perm   2 sec   (6352 perm/sec)   p_kst 2.074000e-01   p_cons 4.953000e-01   p_joint 3.313000e-01

Outputting figure to mutsig2_images.part000000000014/AVPR2.4_1148_10000_0.2074_0.4953_0.3313.png
                gene_name: AVPR2
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 33 percent done.
B3GNT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.711004e-02	ci left: 8.326658e-01	ci right 8.471356e-01	k: 8400	n:10000
Cons ci ratio: 3.807373e-02	ci left: 5.046513e-01	ci right 5.243403e-01	k: 5145	n:10000
KS ci ratio: 1.554831e-02	ci left: 8.572275e-01	ci right 8.707597e-01	k: 8641	n:10000
B3GNT3   10000 perm   2 sec   (6511 perm/sec)   p_kst 8.641000e-01   p_cons 5.145000e-01   p_joint 8.400000e-01

Outputting figure to mutsig2_images.part000000000014/B3GNT3.4_1127_10000_0.8641_0.5145_0.84.png
                gene_name: B3GNT3
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 35 percent done.
B4GALNT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.704991e-02	ci left: 6.681371e-01	ci right 6.865595e-01	k: 6774	n:10000
Cons ci ratio: 2.753382e-02	ci left: 6.602828e-01	ci right 6.788183e-01	k: 6696	n:10000
KS ci ratio: 4.302484e-02	ci left: 4.437074e-01	ci right 4.633197e-01	k: 4535	n:10000
B4GALNT3   10000 perm   2 sec   (5065 perm/sec)   p_kst 4.535000e-01   p_cons 6.696000e-01   p_joint 6.774000e-01

Outputting figure to mutsig2_images.part000000000014/B4GALNT3.4_3077_10000_0.4535_0.6696_0.6774.png
                gene_name: B4GALNT3
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 37 percent done.
ATP6V1H
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.197598e-02	ci left: 1.784159e-01	ci right 1.937674e-01	k: 1860	n:10000
Cons ci ratio: 3.041308e-02	ci left: 6.146223e-01	ci right 6.337054e-01	k: 6242	n:10000
KS ci ratio: 1.445485e-01	ci left: 6.352868e-02	ci right 7.352445e-02	k: 684	n:10000
ATP6V1H   10000 perm   2 sec   (5978 perm/sec)   p_kst 6.840000e-02   p_cons 6.242000e-01   p_joint 1.860000e-01

Joint ci ratio: 7.046446e-02	ci left: 1.292581e-01	ci right 1.387486e-01	k: 2679	n:20000
Cons ci ratio: 2.141248e-02	ci left: 6.195021e-01	ci right 6.329612e-01	k: 12525	n:20000
KS ci ratio: 1.010309e-01	ci left: 6.645278e-02	ci right 7.357284e-02	k: 1399	n:20000
ATP6V1H   20000 perm   4 sec   (5290 perm/sec)   p_kst 6.995000e-02   p_cons 6.262500e-01   p_joint 1.339500e-01

Joint ci ratio: 7.880085e-02	ci left: 7.318945e-02	ci right 7.922626e-02	k: 2285	n:30000
Cons ci ratio: 1.746421e-02	ci left: 6.212649e-01	ci right 6.322439e-01	k: 18803	n:30000
KS ci ratio: 8.352297e-02	ci left: 6.553607e-02	ci right 7.128119e-02	k: 2051	n:30000
ATP6V1H   30000 perm   6 sec   (5011 perm/sec)   p_kst 6.836667e-02   p_cons 6.267667e-01   p_joint 7.616667e-02

Outputting figure to mutsig2_images.part000000000014/ATP6V1H.3_1504_30000_0.068367_0.62677_0.076167.png
                gene_name: ATP6V1H
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.068 
        ci_ks_bounds_left: 0.066 
       ci_ks_bounds_right: 0.071 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.076 
     ci_joint_bounds_left: 0.073 
    ci_joint_bounds_right: 0.079 

Current progress: 39 percent done.
ATP8B3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.434813e-02	ci left: 8.754132e-01	ci right 8.881634e-01	k: 8819	n:10000
KS ci ratio: 2.307825e-02	ci left: 7.339111e-01	ci right 7.511474e-01	k: 7426	n:10000
ATP8B3   10000 perm   2 sec   (4770 perm/sec)   p_kst 7.426000e-01   p_cons 8.819000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000014/ATP8B3.3_4063_10000_0.7426_0.8819_1.png
                gene_name: ATP8B3
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 41 percent done.
ATXN10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.619083e-02	ci left: 8.472320e-01	ci right 8.611609e-01	k: 8543	n:10000
Cons ci ratio: 4.248217e-02	ci left: 4.499948e-01	ci right 4.696286e-01	k: 4598	n:10000
KS ci ratio: 1.632709e-02	ci left: 8.450916e-01	ci right 8.591026e-01	k: 8522	n:10000
ATXN10   10000 perm   2 sec   (6234 perm/sec)   p_kst 8.522000e-01   p_cons 4.598000e-01   p_joint 8.543000e-01

Outputting figure to mutsig2_images.part000000000014/ATXN10.3_1476_10000_0.8522_0.4598_0.8543.png
                gene_name: ATXN10
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 43 percent done.
ATXN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.750272e-02	ci left: 6.607862e-01	ci right 6.793147e-01	k: 6701	n:10000
Cons ci ratio: 7.516901e-02	ci left: 2.057000e-01	ci right 2.218670e-01	k: 2137	n:10000
KS ci ratio: 1.916501e-02	ci left: 7.992275e-01	ci right 8.147933e-01	k: 8071	n:10000
ATXN2   10000 perm   2 sec   (4767 perm/sec)   p_kst 8.071000e-01   p_cons 2.137000e-01   p_joint 6.701000e-01

Outputting figure to mutsig2_images.part000000000014/ATXN2.3_4042_10000_0.8071_0.2137_0.6701.png
                gene_name: ATXN2
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 45 percent done.
ATXN3L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.012858e-02	ci left: 6.190435e-01	ci right 6.380815e-01	k: 6286	n:10000
Cons ci ratio: 7.032931e-03	ci left: 9.653082e-01	ci right 9.722151e-01	k: 9689	n:10000
KS ci ratio: 4.671537e-02	ci left: 4.034258e-01	ci right 4.228248e-01	k: 4131	n:10000
ATXN3L   10000 perm   2 sec   (6270 perm/sec)   p_kst 4.131000e-01   p_cons 9.689000e-01   p_joint 6.286000e-01

Outputting figure to mutsig2_images.part000000000014/ATXN3L.3_1072_10000_0.4131_0.9689_0.6286.png
                gene_name: ATXN3L
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 47 percent done.
ATXN7L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.967861e-02	ci left: 6.260790e-01	ci right 6.450419e-01	k: 6356	n:10000
Cons ci ratio: 5.205220e-02	ci left: 3.523733e-01	ci right 3.713072e-01	k: 3618	n:10000
KS ci ratio: 3.323079e-02	ci left: 5.720595e-01	ci right 5.914928e-01	k: 5818	n:10000
ATXN7L2   10000 perm   2 sec   (5446 perm/sec)   p_kst 5.818000e-01   p_cons 3.618000e-01   p_joint 6.356000e-01

Outputting figure to mutsig2_images.part000000000014/ATXN7L2.3_2213_10000_0.5818_0.3618_0.6356.png
                gene_name: ATXN7L2
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 49 percent done.
AUTS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.822728e-02	ci left: 6.491105e-01	ci right 6.677971e-01	k: 6585	n:10000
KS ci ratio: 1.093240e-02	ci left: 9.226548e-01	ci right 9.328943e-01	k: 9279	n:10000
AUTS2   10000 perm   2 sec   (4824 perm/sec)   p_kst 9.279000e-01   p_cons 6.585000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000014/AUTS2.3_4001_10000_0.9279_0.6585_1.png
                gene_name: AUTS2
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 51 percent done.
AVL9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.303319e-02	ci left: 5.749683e-01	ci right 5.943823e-01	k: 5847	n:10000
KS ci ratio: 2.022342e-02	ci left: 7.816803e-01	ci right 7.977506e-01	k: 7898	n:10000
AVL9   10000 perm   2 sec   (5752 perm/sec)   p_kst 7.898000e-01   p_cons 5.847000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000014/AVL9.3_2011_10000_0.7898_0.5847_1.png
                gene_name: AVL9
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 53 percent done.
AVPR1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.147477e-01	ci left: 9.847268e-02	ci right 1.105588e-01	k: 1044	n:10000
Cons ci ratio: 1.719268e-02	ci left: 8.313427e-01	ci right 8.458595e-01	k: 8387	n:10000
KS ci ratio: 2.155899e-01	ci left: 2.854258e-02	ci right 3.553353e-02	k: 319	n:10000
AVPR1A   10000 perm   2 sec   (6457 perm/sec)   p_kst 3.190000e-02   p_cons 8.387000e-01   p_joint 1.044000e-01

Joint ci ratio: 7.661082e-02	ci left: 1.112981e-01	ci right 1.202140e-01	k: 2314	n:20000
Cons ci ratio: 1.233343e-02	ci left: 8.295291e-01	ci right 8.398734e-01	k: 16695	n:20000
KS ci ratio: 1.603879e-01	ci left: 2.666999e-02	ci right 3.136827e-02	k: 579	n:20000
AVPR1A   20000 perm   4 sec   (5627 perm/sec)   p_kst 2.895000e-02   p_cons 8.347500e-01   p_joint 1.157000e-01

Joint ci ratio: 8.968531e-02	ci left: 5.717552e-02	ci right 6.257677e-02	k: 1795	n:30000
Cons ci ratio: 1.004266e-02	ci left: 8.312558e-01	ci right 8.396791e-01	k: 25065	n:30000
KS ci ratio: 1.304178e-01	ci left: 2.732382e-02	ci right 3.116807e-02	k: 876	n:30000
AVPR1A   30000 perm   6 sec   (5318 perm/sec)   p_kst 2.920000e-02   p_cons 8.355000e-01   p_joint 5.983333e-02

Joint ci ratio: 8.332759e-02	ci left: 5.023634e-02	ci right 5.462892e-02	k: 2096	n:40000
Cons ci ratio: 8.657555e-03	ci left: 8.330911e-01	ci right 8.403599e-01	k: 33470	n:40000
KS ci ratio: 1.129124e-01	ci left: 2.759610e-02	ci right 3.092271e-02	k: 1169	n:40000
AVPR1A   40000 perm   8 sec   (5112 perm/sec)   p_kst 2.922500e-02   p_cons 8.367500e-01   p_joint 5.240000e-02

Joint ci ratio: 8.242253e-02	ci left: 4.149335e-02	ci right 4.507992e-02	k: 2163	n:50000
Cons ci ratio: 7.722250e-03	ci left: 8.342369e-01	ci right 8.407239e-01	k: 41875	n:50000
KS ci ratio: 1.009034e-01	ci left: 2.781965e-02	ci right 3.079534e-02	k: 1464	n:50000
AVPR1A   50000 perm   10 sec   (4957 perm/sec)   p_kst 2.928000e-02   p_cons 8.375000e-01   p_joint 4.326000e-02

Joint ci ratio: 6.740050e-02	ci left: 5.156512e-02	ci right 5.517824e-02	k: 3201	n:60000
Cons ci ratio: 7.047668e-03	ci left: 8.345907e-01	ci right 8.405100e-01	k: 50254	n:60000
KS ci ratio: 9.321004e-02	ci left: 2.729711e-02	ci right 2.998208e-02	k: 1717	n:60000
AVPR1A   60000 perm   12 sec   (4817 perm/sec)   p_kst 2.861667e-02   p_cons 8.375667e-01   p_joint 5.335000e-02

Outputting figure to mutsig2_images.part000000000014/AVPR1A.3_1265_60000_0.028617_0.83757_0.05335.png
                gene_name: AVPR1A
               theta_stop: 0.093 
                    nperm: 60000 
                     p_ks: 0.029 
        ci_ks_bounds_left: 0.027 
       ci_ks_bounds_right: 0.030 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.053 
     ci_joint_bounds_left: 0.052 
    ci_joint_bounds_right: 0.055 

Current progress: 55 percent done.
AZI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.499685e-02	ci left: 7.019041e-01	ci right 7.197729e-01	k: 7109	n:10000
Cons ci ratio: 3.971484e-02	ci left: 4.835542e-01	ci right 5.032497e-01	k: 4934	n:10000
KS ci ratio: 3.109098e-02	ci left: 6.041754e-01	ci right 6.233583e-01	k: 6138	n:10000
AZI1   10000 perm   2 sec   (5274 perm/sec)   p_kst 6.138000e-01   p_cons 4.934000e-01   p_joint 7.109000e-01

Outputting figure to mutsig2_images.part000000000014/AZI1.3_3343_10000_0.6138_0.4934_0.7109.png
                gene_name: AZI1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 57 percent done.
B3GALT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.576724e-02	ci left: 3.213802e-01	ci right 3.399186e-01	k: 3306	n:10000
Cons ci ratio: 5.457943e-02	ci left: 3.309118e-01	ci right 3.495813e-01	k: 3402	n:10000
KS ci ratio: 9.871639e-02	ci left: 1.294361e-01	ci right 1.429766e-01	k: 1361	n:10000
B3GALT1   10000 perm   2 sec   (6629 perm/sec)   p_kst 1.361000e-01   p_cons 3.402000e-01   p_joint 3.306000e-01

Outputting figure to mutsig2_images.part000000000014/B3GALT1.3_985_10000_0.1361_0.3402_0.3306.png
                gene_name: B3GALT1
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 59 percent done.
B3GALT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.307811e-02	ci left: 2.697298e-01	ci right 2.873994e-01	k: 2785	n:10000
Cons ci ratio: 7.217141e-02	ci left: 2.195112e-01	ci right 2.360477e-01	k: 2277	n:10000
KS ci ratio: 6.359997e-02	ci left: 2.664630e-01	ci right 2.840681e-01	k: 2752	n:10000
B3GALT2   10000 perm   2 sec   (6423 perm/sec)   p_kst 2.752000e-01   p_cons 2.277000e-01   p_joint 2.785000e-01

Outputting figure to mutsig2_images.part000000000014/B3GALT2.3_1273_10000_0.2752_0.2277_0.2785.png
                gene_name: B3GALT2
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 61 percent done.
B3GNT8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.329282e-01	ci left: 7.465870e-02	ci right 8.538747e-02	k: 799	n:10000
Cons ci ratio: 1.920312e-01	ci left: 3.614841e-02	ci right 4.392246e-02	k: 399	n:10000
KS ci ratio: 6.055541e-02	ci left: 2.862707e-01	ci right 3.042488e-01	k: 2952	n:10000
B3GNT8   10000 perm   2 sec   (6221 perm/sec)   p_kst 2.952000e-01   p_cons 3.990000e-02   p_joint 7.990000e-02

Joint ci ratio: 9.457581e-02	ci left: 7.534699e-02	ci right 8.287592e-02	k: 1581	n:20000
Cons ci ratio: 1.357897e-01	ci left: 3.727788e-02	ci right 4.275688e-02	k: 799	n:20000
KS ci ratio: 4.257878e-02	ci left: 2.912684e-01	ci right 3.039905e-01	k: 5952	n:20000
B3GNT8   20000 perm   4 sec   (5463 perm/sec)   p_kst 2.976000e-01   p_cons 3.995000e-02   p_joint 7.905000e-02

Joint ci ratio: 9.854601e-02	ci left: 4.762588e-02	ci right 5.259504e-02	k: 1502	n:30000
Cons ci ratio: 1.113569e-01	ci left: 3.745367e-02	ci right 4.190271e-02	k: 1189	n:30000
KS ci ratio: 3.488363e-02	ci left: 2.910367e-01	ci right 3.014028e-01	k: 8886	n:30000
B3GNT8   30000 perm   6 sec   (5171 perm/sec)   p_kst 2.962000e-01   p_cons 3.963333e-02   p_joint 5.006667e-02

Joint ci ratio: 6.905644e-02	ci left: 7.196979e-02	ci right 7.714218e-02	k: 2981	n:40000
Cons ci ratio: 9.589410e-02	ci left: 3.817386e-02	ci right 4.204327e-02	k: 1603	n:40000
KS ci ratio: 3.028881e-02	ci left: 2.906578e-01	ci right 2.996219e-01	k: 11805	n:40000
B3GNT8   40000 perm   8 sec   (4973 perm/sec)   p_kst 2.951250e-01   p_cons 4.007500e-02   p_joint 7.452500e-02

Outputting figure to mutsig2_images.part000000000014/B3GNT8.3_1198_40000_0.29513_0.040075_0.074525.png
                gene_name: B3GNT8
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.040 
      ci_cons_bounds_left: 0.038 
     ci_cons_bounds_right: 0.042 
                  p_joint: 0.075 
     ci_joint_bounds_left: 0.072 
    ci_joint_bounds_right: 0.077 

Current progress: 63 percent done.
B4GALT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.759650e-02	ci left: 5.109538e-01	ci right 5.306341e-01	k: 5208	n:10000
Cons ci ratio: 3.663624e-02	ci left: 5.238638e-01	ci right 5.435165e-01	k: 5337	n:10000
KS ci ratio: 5.571689e-02	ci left: 3.217772e-01	ci right 3.403213e-01	k: 3310	n:10000
B4GALT3   10000 perm   2 sec   (6519 perm/sec)   p_kst 3.310000e-01   p_cons 5.337000e-01   p_joint 5.208000e-01

Outputting figure to mutsig2_images.part000000000014/B4GALT3.3_1206_10000_0.331_0.5337_0.5208.png
                gene_name: B4GALT3
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 65 percent done.
B4GALT4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.299920e-02	ci left: 5.754698e-01	ci right 5.948805e-01	k: 5852	n:10000
Cons ci ratio: 3.746868e-02	ci left: 5.126548e-01	ci right 5.323321e-01	k: 5225	n:10000
KS ci ratio: 5.340906e-02	ci left: 3.406464e-01	ci right 3.594411e-01	k: 3500	n:10000
B4GALT4   10000 perm   2 sec   (6585 perm/sec)   p_kst 3.500000e-01   p_cons 5.225000e-01   p_joint 5.852000e-01

Outputting figure to mutsig2_images.part000000000014/B4GALT4.3_1059_10000_0.35_0.5225_0.5852.png
                gene_name: B4GALT4
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.59 

Current progress: 67 percent done.
ATP7B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.588454e-02	ci left: 1.649446e-01	ci right 1.798468e-01	k: 1723	n:10000
KS ci ratio: 1.839835e-02	ci left: 8.118192e-01	ci right 8.269942e-01	k: 8195	n:10000
ATP7B   10000 perm   2 sec   (4872 perm/sec)   p_kst 8.195000e-01   p_cons 1.723000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000014/ATP7B.2_4482_10000_0.8195_0.1723_1.png
                gene_name: ATP7B
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 69 percent done.
ATPAF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.379027e-02	ci left: 1.416816e-01	ci right 1.557237e-01	k: 1486	n:10000
Cons ci ratio: 9.691176e-02	ci left: 1.337444e-01	ci right 1.474657e-01	k: 1405	n:10000
KS ci ratio: 5.301242e-02	ci left: 3.440247e-01	ci right 3.628608e-01	k: 3534	n:10000
ATPAF1   10000 perm   1 sec   (6774 perm/sec)   p_kst 3.534000e-01   p_cons 1.405000e-01   p_joint 1.486000e-01

Outputting figure to mutsig2_images.part000000000014/ATPAF1.2_1023_10000_0.3534_0.1405_0.1486.png
                gene_name: ATPAF1
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.16 

Current progress: 71 percent done.
ATRIP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.553508e-02	ci left: 8.574316e-01	ci right 8.709555e-01	k: 8643	n:10000
Cons ci ratio: 1.240721e-02	ci left: 9.031932e-01	ci right 9.145673e-01	k: 9090	n:10000
KS ci ratio: 2.866147e-02	ci left: 6.421684e-01	ci right 6.609432e-01	k: 6516	n:10000
ATRIP   10000 perm   2 sec   (6162 perm/sec)   p_kst 6.516000e-01   p_cons 9.090000e-01   p_joint 8.643000e-01

Outputting figure to mutsig2_images.part000000000014/ATRIP.2_2428_10000_0.6516_0.909_0.8643.png
                gene_name: ATRIP
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 73 percent done.
ATXN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.163954e-01	ci left: 1.379226e-03	ci right 3.328943e-03	k: 22	n:10000
Cons ci ratio: 1.063575e-02	ci left: 9.263722e-01	ci right 9.363747e-01	k: 9315	n:10000
KS ci ratio: 2.262761e+00	ci left: 2.422185e-05	ci right 7.222801e-04	k: 2	n:10000
ATXN1   10000 perm   2 sec   (6072 perm/sec)   p_kst 2.000000e-04   p_cons 9.315000e-01   p_joint 2.200000e-03

Joint ci ratio: 1.385617e+00	ci left: 1.407294e-04	ci right 7.210000e-04	k: 7	n:20000
Cons ci ratio: 7.207754e-03	ci left: 9.332363e-01	ci right 9.400360e-01	k: 18734	n:20000
KS ci ratio: 1.600053e+00	ci left: 8.117914e-05	ci right 5.833193e-04	k: 5	n:20000
ATXN1   20000 perm   4 sec   (5352 perm/sec)   p_kst 2.500000e-04   p_cons 9.367000e-01   p_joint 3.500000e-04

Joint ci ratio: 1.239386e+00	ci left: 1.371880e-04	ci right 5.694167e-04	k: 9	n:30000
Cons ci ratio: 5.828118e-03	ci left: 9.350417e-01	ci right 9.405398e-01	k: 28135	n:30000
KS ci ratio: 1.306449e+00	ci left: 1.151345e-04	ci right 5.253717e-04	k: 8	n:30000
ATXN1   30000 perm   6 sec   (5061 perm/sec)   p_kst 2.666667e-04   p_cons 9.378333e-01   p_joint 3.000000e-04

Joint ci ratio: 1.181747e+00	ci left: 1.198910e-04	ci right 4.597107e-04	k: 10	n:40000
Cons ci ratio: 5.062532e-03	ci left: 9.350580e-01	ci right 9.398283e-01	k: 37499	n:40000
KS ci ratio: 1.239442e+00	ci left: 1.028893e-04	ci right 4.270769e-04	k: 9	n:40000
ATXN1   40000 perm   8 sec   (4892 perm/sec)   p_kst 2.250000e-04   p_cons 9.374750e-01   p_joint 2.500000e-04

Joint ci ratio: 1.047507e+00	ci left: 1.384461e-04	ci right 4.445669e-04	k: 13	n:50000
Cons ci ratio: 4.527739e-03	ci left: 9.353224e-01	ci right 9.395866e-01	k: 46874	n:50000
KS ci ratio: 1.087060e+00	ci left: 1.240175e-04	ci right 4.191941e-04	k: 12	n:50000
ATXN1   50000 perm   11 sec   (4745 perm/sec)   p_kst 2.400000e-04   p_cons 9.374800e-01   p_joint 2.600000e-04

Joint ci ratio: 9.798612e-01	ci left: 1.399296e-04	ci right 4.123035e-04	k: 15	n:60000
Cons ci ratio: 4.143020e-03	ci left: 9.352292e-01	ci right 9.391283e-01	k: 56232	n:60000
KS ci ratio: 1.012005e+00	ci left: 1.275712e-04	ci right 3.914627e-04	k: 14	n:60000
ATXN1   60000 perm   13 sec   (4617 perm/sec)   p_kst 2.333333e-04   p_cons 9.372000e-01   p_joint 2.500000e-04

Joint ci ratio: 8.172364e-01	ci left: 1.969713e-04	ci right 4.757939e-04	k: 22	n:70000
Cons ci ratio: 3.831447e-03	ci left: 9.355078e-01	ci right 9.391130e-01	k: 65613	n:70000
KS ci ratio: 8.764072e-01	ci left: 1.634254e-04	ci right 4.238370e-04	k: 19	n:70000
ATXN1   70000 perm   16 sec   (4501 perm/sec)   p_kst 2.714286e-04   p_cons 9.373286e-01   p_joint 3.142857e-04

Joint ci ratio: 4.976444e-01	ci left: 5.833007e-04	ci right 9.793569e-04	k: 61	n:80000
Cons ci ratio: 3.570317e-03	ci left: 9.360789e-01	ci right 9.394393e-01	k: 75022	n:80000
KS ci ratio: 7.039120e-01	ci left: 2.530248e-04	ci right 5.352929e-04	k: 30	n:80000
ATXN1   80000 perm   18 sec   (4392 perm/sec)   p_kst 3.750000e-04   p_cons 9.377750e-01   p_joint 7.625000e-04

Joint ci ratio: 4.153114e-01	ci left: 7.842779e-04	ci right 1.204513e-03	k: 88	n:90000
Cons ci ratio: 3.371463e-03	ci left: 9.359888e-01	ci right 9.391607e-01	k: 84383	n:90000
KS ci ratio: 6.531990e-01	ci left: 2.708898e-04	ci right 5.408092e-04	k: 35	n:90000
ATXN1   90000 perm   21 sec   (4295 perm/sec)   p_kst 3.888889e-04   p_cons 9.375889e-01   p_joint 9.777778e-04

Joint ci ratio: 4.353769e-01	ci left: 6.343996e-04	ci right 9.955718e-04	k: 80	n:100000
Cons ci ratio: 3.209043e-03	ci left: 9.356786e-01	ci right 9.386959e-01	k: 93720	n:100000
KS ci ratio: 6.047391e-01	ci left: 2.942386e-04	ci right 5.561706e-04	k: 41	n:100000
ATXN1   100000 perm   24 sec   (4205 perm/sec)   p_kst 4.100000e-04   p_cons 9.372000e-01   p_joint 8.000000e-04

Joint ci ratio: 4.250175e-01	ci left: 6.091506e-04	ci right 9.453478e-04	k: 84	n:110000
Cons ci ratio: 3.054248e-03	ci left: 9.359615e-01	ci right 9.388335e-01	k: 103115	n:110000
KS ci ratio: 6.047509e-01	ci left: 2.674884e-04	ci right 5.056130e-04	k: 41	n:110000
ATXN1   110000 perm   27 sec   (4124 perm/sec)   p_kst 3.727273e-04   p_cons 9.374091e-01   p_joint 7.636364e-04

Joint ci ratio: 4.130476e-01	ci left: 5.956603e-04	ci right 9.126066e-04	k: 89	n:120000
Cons ci ratio: 2.926509e-03	ci left: 9.359305e-01	ci right 9.386817e-01	k: 112478	n:120000
KS ci ratio: 5.842471e-01	ci left: 2.664328e-04	ci right 4.922020e-04	k: 44	n:120000
ATXN1   120000 perm   30 sec   (4044 perm/sec)   p_kst 3.666667e-04   p_cons 9.373167e-01   p_joint 7.416667e-04

Joint ci ratio: 4.085420e-01	ci left: 5.636326e-04	ci right 8.593764e-04	k: 91	n:130000
Cons ci ratio: 2.807668e-03	ci left: 9.361550e-01	ci right 9.387947e-01	k: 121873	n:130000
KS ci ratio: 5.716852e-01	ci left: 2.590711e-04	ci right 4.719533e-04	k: 46	n:130000
ATXN1   130000 perm   33 sec   (3968 perm/sec)   p_kst 3.538462e-04   p_cons 9.374846e-01   p_joint 7.000000e-04

Joint ci ratio: 3.938341e-01	ci left: 5.683292e-04	ci right 8.530105e-04	k: 98	n:140000
Cons ci ratio: 2.706821e-03	ci left: 9.361473e-01	ci right 9.386917e-01	k: 131240	n:140000
KS ci ratio: 5.435033e-01	ci left: 2.712463e-04	ci right 4.789410e-04	k: 51	n:140000
ATXN1   140000 perm   36 sec   (3898 perm/sec)   p_kst 3.642857e-04   p_cons 9.374286e-01   p_joint 7.000000e-04

Joint ci ratio: 3.842531e-01	ci left: 5.605131e-04	ci right 8.327222e-04	k: 103	n:150000
Cons ci ratio: 2.619379e-03	ci left: 9.359941e-01	ci right 9.384556e-01	k: 140585	n:150000
KS ci ratio: 5.333466e-01	ci left: 2.646818e-04	ci right 4.621435e-04	k: 53	n:150000
ATXN1   150000 perm   39 sec   (3832 perm/sec)   p_kst 3.533333e-04   p_cons 9.372333e-01   p_joint 6.866667e-04

Joint ci ratio: 4.651137e-01	ci left: 3.410681e-04	ci right 5.527231e-04	k: 70	n:160000
Cons ci ratio: 2.537992e-03	ci left: 9.359498e-01	ci right 9.383344e-01	k: 149944	n:160000
KS ci ratio: 5.146263e-01	ci left: 2.698311e-04	ci right 4.615389e-04	k: 57	n:160000
ATXN1   160000 perm   42 sec   (3766 perm/sec)   p_kst 3.562500e-04   p_cons 9.371500e-01   p_joint 4.375000e-04

Joint ci ratio: 4.495530e-01	ci left: 3.470286e-04	ci right 5.529876e-04	k: 75	n:170000
Cons ci ratio: 2.470619e-03	ci left: 9.355795e-01	ci right 9.378997e-01	k: 159247	n:170000
KS ci ratio: 4.977482e-01	ci left: 2.744823e-04	ci right 4.609003e-04	k: 61	n:170000
ATXN1   170000 perm   46 sec   (3704 perm/sec)   p_kst 3.588235e-04   p_cons 9.367471e-01   p_joint 4.411765e-04

Joint ci ratio: 4.250821e-01	ci left: 3.722482e-04	ci right 5.777330e-04	k: 84	n:180000
Cons ci ratio: 2.400383e-03	ci left: 9.356437e-01	ci right 9.378978e-01	k: 168620	n:180000
KS ci ratio: 4.651254e-01	ci left: 3.031701e-04	ci right 4.913125e-04	k: 70	n:180000
ATXN1   180000 perm   49 sec   (3644 perm/sec)   p_kst 3.888889e-04   p_cons 9.367778e-01   p_joint 4.666667e-04

Joint ci ratio: 4.108282e-01	ci left: 3.809147e-04	ci right 5.822067e-04	k: 90	n:190000
Cons ci ratio: 2.337580e-03	ci left: 9.356117e-01	ci right 9.378065e-01	k: 177976	n:190000
KS ci ratio: 4.495637e-01	ci left: 3.104978e-04	ci right 4.947813e-04	k: 75	n:190000
ATXN1   190000 perm   53 sec   (3585 perm/sec)   p_kst 3.947368e-04   p_cons 9.367158e-01   p_joint 4.736842e-04

Joint ci ratio: 3.979182e-01	ci left: 3.888183e-04	ci right 5.861310e-04	k: 96	n:200000
Cons ci ratio: 2.279843e-03	ci left: 9.355635e-01	ci right 9.377038e-01	k: 187328	n:200000
KS ci ratio: 4.328017e-01	ci left: 3.216411e-04	ci right 5.033533e-04	k: 81	n:200000
ATXN1   200000 perm   57 sec   (3528 perm/sec)   p_kst 4.050000e-04   p_cons 9.366400e-01   p_joint 4.800000e-04

Joint ci ratio: 3.899598e-01	ci left: 3.874638e-04	ci right 5.791454e-04	k: 100	n:210000
Cons ci ratio: 2.222610e-03	ci left: 9.357125e-01	ci right 9.377992e-01	k: 196720	n:210000
KS ci ratio: 4.226169e-01	ci left: 3.233218e-04	ci right 5.004704e-04	k: 85	n:210000
ATXN1   210000 perm   60 sec   (3472 perm/sec)   p_kst 4.047619e-04   p_cons 9.367619e-01   p_joint 4.761905e-04

Joint ci ratio: 3.117457e-01	ci left: 6.064045e-04	ci right 8.343561e-04	k: 157	n:220000
Cons ci ratio: 2.170558e-03	ci left: 9.357889e-01	ci right 9.378268e-01	k: 206099	n:220000
KS ci ratio: 4.131188e-01	ci left: 3.248954e-04	ci right 4.978048e-04	k: 89	n:220000
ATXN1   220000 perm   64 sec   (3419 perm/sec)   p_kst 4.045455e-04   p_cons 9.368136e-01   p_joint 7.136364e-04

Joint ci ratio: 3.107681e-01	ci left: 5.840463e-04	ci right 8.027679e-04	k: 158	n:230000
Cons ci ratio: 2.120672e-03	ci left: 9.359337e-01	ci right 9.379249e-01	k: 215495	n:230000
KS ci ratio: 4.042336e-01	ci left: 3.263729e-04	ci right 4.953309e-04	k: 93	n:230000
ATXN1   230000 perm   68 sec   (3368 perm/sec)   p_kst 4.043478e-04   p_cons 9.369348e-01   p_joint 6.869565e-04

Joint ci ratio: 3.097992e-01	ci left: 5.635523e-04	ci right 7.738109e-04	k: 159	n:240000
Cons ci ratio: 2.076045e-03	ci left: 9.359534e-01	ci right 9.379027e-01	k: 224864	n:240000
KS ci ratio: 4.021031e-01	ci left: 3.165178e-04	ci right 4.792798e-04	k: 94	n:240000
ATXN1   240000 perm   72 sec   (3318 perm/sec)   p_kst 3.916667e-04   p_cons 9.369333e-01   p_joint 6.625000e-04

Joint ci ratio: 3.719866e-01	ci left: 3.616399e-04	ci right 5.302950e-04	k: 110	n:250000
Cons ci ratio: 2.031504e-03	ci left: 9.361251e-01	ci right 9.380327e-01	k: 234271	n:250000
KS ci ratio: 3.919208e-01	ci left: 3.218605e-04	ci right 4.820950e-04	k: 99	n:250000
ATXN1   250000 perm   76 sec   (3269 perm/sec)   p_kst 3.960000e-04   p_cons 9.370840e-01   p_joint 4.400000e-04

Joint ci ratio: 3.753885e-01	ci left: 3.407601e-04	ci right 5.014888e-04	k: 108	n:260000
Cons ci ratio: 1.992301e-03	ci left: 9.361290e-01	ci right 9.379997e-01	k: 243638	n:260000
KS ci ratio: 3.824748e-01	ci left: 3.268403e-04	ci right 4.846464e-04	k: 104	n:260000
ATXN1   260000 perm   81 sec   (3222 perm/sec)   p_kst 4.000000e-04   p_cons 9.370692e-01   p_joint 4.153846e-04

Joint ci ratio: 3.686847e-01	ci left: 3.415691e-04	ci right 4.991090e-04	k: 112	n:270000
Cons ci ratio: 1.955038e-03	ci left: 9.361479e-01	ci right 9.379835e-01	k: 253009	n:270000
KS ci ratio: 3.753914e-01	ci left: 3.281389e-04	ci right 4.829159e-04	k: 108	n:270000
ATXN1   270000 perm   85 sec   (3177 perm/sec)   p_kst 4.000000e-04   p_cons 9.370704e-01   p_joint 4.148148e-04

Joint ci ratio: 3.577681e-01	ci left: 3.520895e-04	ci right 5.085546e-04	k: 119	n:280000
Cons ci ratio: 1.918569e-03	ci left: 9.362412e-01	ci right 9.380426e-01	k: 262401	n:280000
KS ci ratio: 3.654662e-01	ci left: 3.358540e-04	ci right 4.890829e-04	k: 114	n:280000
ATXN1   280000 perm   89 sec   (3133 perm/sec)   p_kst 4.071429e-04   p_cons 9.371464e-01   p_joint 4.250000e-04

Joint ci ratio: 3.519505e-01	ci left: 3.525121e-04	ci right 5.060359e-04	k: 123	n:290000
Cons ci ratio: 1.886438e-03	ci left: 9.361790e-01	ci right 9.379501e-01	k: 271750	n:290000
KS ci ratio: 3.592715e-01	ci left: 3.368103e-04	ci right 4.872615e-04	k: 118	n:290000
ATXN1   290000 perm   94 sec   (3091 perm/sec)   p_kst 4.068966e-04   p_cons 9.370690e-01   p_joint 4.241379e-04

Joint ci ratio: 3.464078e-01	ci left: 3.529258e-04	ci right 5.036661e-04	k: 127	n:300000
Cons ci ratio: 1.854242e-03	ci left: 9.362253e-01	ci right 9.379662e-01	k: 281130	n:300000
KS ci ratio: 3.548274e-01	ci left: 3.346862e-04	ci right 4.819129e-04	k: 121	n:300000
ATXN1   300000 perm   98 sec   (3050 perm/sec)   p_kst 4.033333e-04   p_cons 9.371000e-01   p_joint 4.233333e-04

Joint ci ratio: 3.265903e-01	ci left: 3.887982e-04	ci right 5.433710e-04	k: 143	n:310000
Cons ci ratio: 1.825336e-03	ci left: 9.361585e-01	ci right 9.378720e-01	k: 290476	n:310000
KS ci ratio: 3.477719e-01	ci left: 3.385960e-04	ci right 4.839137e-04	k: 126	n:310000
ATXN1   310000 perm   103 sec   (3009 perm/sec)   p_kst 4.064516e-04   p_cons 9.370194e-01   p_joint 4.612903e-04

Joint ci ratio: 3.232414e-01	ci left: 3.852586e-04	ci right 5.365279e-04	k: 146	n:320000
Cons ci ratio: 1.798403e-03	ci left: 9.360520e-01	ci right 9.377400e-01	k: 299808	n:320000
KS ci ratio: 3.437364e-01	ci left: 3.365758e-04	ci right 4.789774e-04	k: 129	n:320000
ATXN1   320000 perm   108 sec   (2967 perm/sec)   p_kst 4.031250e-04   p_cons 9.369000e-01   p_joint 4.562500e-04

Joint ci ratio: 3.199934e-01	ci left: 3.819411e-04	ci right 5.300920e-04	k: 149	n:330000
Cons ci ratio: 1.771489e-03	ci left: 9.360285e-01	ci right 9.376911e-01	k: 309165	n:330000
KS ci ratio: 3.398381e-01	ci left: 3.346871e-04	ci right 4.743313e-04	k: 132	n:330000
ATXN1   330000 perm   113 sec   (2928 perm/sec)   p_kst 4.000000e-04   p_cons 9.368636e-01   p_joint 4.515152e-04

Joint ci ratio: 3.147897e-01	ci left: 3.842422e-04	ci right 5.303744e-04	k: 154	n:340000
Cons ci ratio: 1.745096e-03	ci left: 9.360509e-01	ci right 9.376887e-01	k: 318537	n:340000
KS ci ratio: 3.348402e-01	ci left: 3.356117e-04	ci right 4.731379e-04	k: 136	n:340000
ATXN1   340000 perm   118 sec   (2889 perm/sec)   p_kst 4.000000e-04   p_cons 9.368735e-01   p_joint 4.529412e-04

Joint ci ratio: 3.088678e-01	ci left: 3.890656e-04	ci right 5.337006e-04	k: 160	n:350000
Cons ci ratio: 1.719184e-03	ci left: 9.361182e-01	ci right 9.377317e-01	k: 327925	n:350000
KS ci ratio: 3.277394e-01	ci left: 3.417402e-04	ci right 4.781829e-04	k: 142	n:350000
ATXN1   350000 perm   123 sec   (2852 perm/sec)   p_kst 4.057143e-04   p_cons 9.369286e-01   p_joint 4.571429e-04

Joint ci ratio: 3.014673e-01	ci left: 3.987795e-04	ci right 5.427934e-04	k: 168	n:360000
Cons ci ratio: 1.694751e-03	ci left: 9.361567e-01	ci right 9.377474e-01	k: 337304	n:360000
KS ci ratio: 3.189377e-01	ci left: 3.526668e-04	ci right 4.889189e-04	k: 150	n:360000
ATXN1   360000 perm   128 sec   (2816 perm/sec)   p_kst 4.166667e-04   p_cons 9.369556e-01   p_joint 4.666667e-04

Joint ci ratio: 2.988273e-01	ci left: 3.954992e-04	ci right 5.368403e-04	k: 171	n:370000
Cons ci ratio: 1.672898e-03	ci left: 9.360819e-01	ci right 9.376518e-01	k: 346642	n:370000
KS ci ratio: 3.158164e-01	ci left: 3.505975e-04	ci right 4.844568e-04	k: 153	n:370000
ATXN1   370000 perm   133 sec   (2780 perm/sec)   p_kst 4.135135e-04   p_cons 9.368703e-01   p_joint 4.621622e-04

Joint ci ratio: 2.971060e-01	ci left: 3.899609e-04	ci right 5.283687e-04	k: 173	n:380000
Cons ci ratio: 1.649772e-03	ci left: 9.361620e-01	ci right 9.377103e-01	k: 356037	n:380000
KS ci ratio: 3.147973e-01	ci left: 3.437944e-04	ci right 4.745474e-04	k: 154	n:380000
ATXN1   380000 perm   138 sec   (2744 perm/sec)   p_kst 4.052632e-04   p_cons 9.369395e-01   p_joint 4.552632e-04

Joint ci ratio: 2.881354e-01	ci left: 4.060980e-04	ci right 5.450891e-04	k: 184	n:390000
Cons ci ratio: 1.629310e-03	ci left: 9.361117e-01	ci right 9.376407e-01	k: 365383	n:390000
KS ci ratio: 3.041859e-01	ci left: 3.609951e-04	ci right 4.927669e-04	k: 165	n:390000
ATXN1   390000 perm   144 sec   (2711 perm/sec)   p_kst 4.230769e-04   p_cons 9.368795e-01   p_joint 4.717949e-04

Joint ci ratio: 2.828334e-01	ci left: 4.121929e-04	ci right 5.502111e-04	k: 191	n:400000
Cons ci ratio: 1.608637e-03	ci left: 9.361345e-01	ci right 9.376441e-01	k: 374757	n:400000
KS ci ratio: 2.979673e-01	ci left: 3.681488e-04	ci right 4.992652e-04	k: 172	n:400000
ATXN1   400000 perm   149 sec   (2676 perm/sec)   p_kst 4.300000e-04   p_cons 9.368925e-01   p_joint 4.775000e-04

Joint ci ratio: 2.792210e-01	ci left: 4.134752e-04	ci right 5.498436e-04	k: 196	n:410000
Cons ci ratio: 1.588633e-03	ci left: 9.361637e-01	ci right 9.376545e-01	k: 384134	n:410000
KS ci ratio: 2.937523e-01	ci left: 3.704598e-04	ci right 5.001855e-04	k: 177	n:410000
ATXN1   410000 perm   155 sec   (2644 perm/sec)   p_kst 4.317073e-04   p_cons 9.369122e-01   p_joint 4.780488e-04

Joint ci ratio: 2.771195e-01	ci left: 4.102752e-04	ci right 5.443921e-04	k: 199	n:420000
Cons ci ratio: 1.570211e-03	ci left: 9.361269e-01	ci right 9.376004e-01	k: 393484	n:420000
KS ci ratio: 2.913082e-01	ci left: 3.682581e-04	ci right 4.959419e-04	k: 180	n:420000
ATXN1   420000 perm   161 sec   (2613 perm/sec)   p_kst 4.285714e-04   p_cons 9.368667e-01   p_joint 4.738095e-04

Joint ci ratio: 2.678987e-01	ci left: 4.310689e-04	ci right 5.665075e-04	k: 213	n:430000
Cons ci ratio: 1.552170e-03	ci left: 9.361107e-01	ci right 9.375671e-01	k: 402842	n:430000
KS ci ratio: 2.865961e-01	ci left: 3.726364e-04	ci right 4.993701e-04	k: 186	n:430000
ATXN1   430000 perm   167 sec   (2582 perm/sec)   p_kst 4.325581e-04   p_cons 9.368419e-01   p_joint 4.953488e-04

Joint ci ratio: 2.642200e-01	ci left: 4.339989e-04	ci right 5.681759e-04	k: 219	n:440000
Cons ci ratio: 1.535856e-03	ci left: 9.360085e-01	ci right 9.374494e-01	k: 412162	n:440000
KS ci ratio: 2.835794e-01	ci left: 3.726084e-04	ci right 4.977600e-04	k: 190	n:440000
ATXN1   440000 perm   172 sec   (2553 perm/sec)   p_kst 4.318182e-04   p_cons 9.367318e-01   p_joint 4.977273e-04

Joint ci ratio: 2.618505e-01	ci left: 4.326572e-04	ci right 5.650235e-04	k: 223	n:450000
Cons ci ratio: 1.518647e-03	ci left: 9.360204e-01	ci right 9.374451e-01	k: 421531	n:450000
KS ci ratio: 2.806559e-01	ci left: 3.725883e-04	ci right 4.962147e-04	k: 194	n:450000
ATXN1   450000 perm   178 sec   (2524 perm/sec)   p_kst 4.311111e-04   p_cons 9.367356e-01   p_joint 4.955556e-04

Joint ci ratio: 2.710902e-01	ci left: 3.928194e-04	ci right 5.179608e-04	k: 208	n:460000
Cons ci ratio: 1.501260e-03	ci left: 9.360908e-01	ci right 9.374993e-01	k: 430927	n:460000
KS ci ratio: 2.764348e-01	ci left: 3.766212e-04	ci right 4.993795e-04	k: 200	n:460000
ATXN1   460000 perm   184 sec   (2496 perm/sec)   p_kst 4.347826e-04   p_cons 9.367978e-01   p_joint 4.521739e-04

Joint ci ratio: 2.691657e-01	ci left: 3.904122e-04	ci right 5.137547e-04	k: 211	n:470000
Cons ci ratio: 1.485015e-03	ci left: 9.361134e-01	ci right 9.375067e-01	k: 440302	n:470000
KS ci ratio: 2.743950e-01	ci left: 3.745501e-04	ci right 4.955771e-04	k: 203	n:470000
ATXN1   470000 perm   190 sec   (2469 perm/sec)   p_kst 4.319149e-04   p_cons 9.368128e-01   p_joint 4.489362e-04

Joint ci ratio: 2.660465e-01	ci left: 3.919965e-04	ci right 5.141653e-04	k: 216	n:480000
Cons ci ratio: 1.469933e-03	ci left: 9.360828e-01	ci right 9.374619e-01	k: 449652	n:480000
KS ci ratio: 2.710927e-01	ci left: 3.764514e-04	ci right 4.963798e-04	k: 208	n:480000
ATXN1   480000 perm   197 sec   (2443 perm/sec)   p_kst 4.333333e-04   p_cons 9.367750e-01   p_joint 4.500000e-04

Joint ci ratio: 2.648296e-01	ci left: 3.878065e-04	ci right 5.080249e-04	k: 218	n:490000
Cons ci ratio: 1.454775e-03	ci left: 9.360966e-01	ci right 9.374615e-01	k: 459023	n:490000
KS ci ratio: 2.698055e-01	ci left: 3.725735e-04	ci right 4.906075e-04	k: 210	n:490000
ATXN1   490000 perm   203 sec   (2415 perm/sec)   p_kst 4.285714e-04   p_cons 9.367816e-01   p_joint 4.448980e-04

Joint ci ratio: 2.556522e-01	ci left: 4.099643e-04	ci right 5.319457e-04	k: 234	n:500000
Cons ci ratio: 1.441558e-03	ci left: 9.359874e-01	ci right 9.373396e-01	k: 468333	n:500000
KS ci ratio: 2.685365e-01	ci left: 3.688521e-04	ci right 4.850648e-04	k: 212	n:500000
ATXN1   500000 perm   209 sec   (2389 perm/sec)   p_kst 4.240000e-04   p_cons 9.366660e-01   p_joint 4.680000e-04

Joint ci ratio: 2.519271e-01	ci left: 4.147785e-04	ci right 5.361118e-04	k: 241	n:510000
Cons ci ratio: 1.426828e-03	ci left: 9.360381e-01	ci right 9.373765e-01	k: 477722	n:510000
KS ci ratio: 2.642291e-01	ci left: 3.744288e-04	ci right 4.901934e-04	k: 219	n:510000
ATXN1   510000 perm   216 sec   (2364 perm/sec)   p_kst 4.294118e-04   p_cons 9.367098e-01   p_joint 4.725490e-04

Joint ci ratio: 2.573029e-01	ci left: 3.887975e-04	ci right 5.053477e-04	k: 231	n:520000
Cons ci ratio: 1.413846e-03	ci left: 9.359768e-01	ci right 9.373029e-01	k: 487054	n:520000
KS ci ratio: 2.624461e-01	ci left: 3.726166e-04	ci right 4.869159e-04	k: 222	n:520000
ATXN1   520000 perm   222 sec   (2339 perm/sec)   p_kst 4.269231e-04   p_cons 9.366423e-01   p_joint 4.442308e-04

Joint ci ratio: 2.545742e-01	ci left: 3.902906e-04	ci right 5.058506e-04	k: 236	n:530000
Cons ci ratio: 1.401054e-03	ci left: 9.359311e-01	ci right 9.372452e-01	k: 496393	n:530000
KS ci ratio: 2.595523e-01	ci left: 3.744030e-04	ci right 4.877785e-04	k: 227	n:530000
ATXN1   530000 perm   229 sec   (2315 perm/sec)   p_kst 4.283019e-04   p_cons 9.365906e-01   p_joint 4.452830e-04

Joint ci ratio: 2.535074e-01	ci left: 3.865308e-04	ci right 5.004222e-04	k: 238	n:540000
Cons ci ratio: 1.388884e-03	ci left: 9.358631e-01	ci right 9.371656e-01	k: 505719	n:540000
KS ci ratio: 2.589857e-01	ci left: 3.692010e-04	ci right 4.807177e-04	k: 228	n:540000
ATXN1   540000 perm   236 sec   (2291 perm/sec)   p_kst 4.222222e-04   p_cons 9.365167e-01   p_joint 4.407407e-04

Joint ci ratio: 2.498739e-01	ci left: 3.914276e-04	ci right 5.048518e-04	k: 245	n:550000
Cons ci ratio: 1.375572e-03	ci left: 9.359236e-01	ci right 9.372137e-01	k: 515114	n:550000
KS ci ratio: 2.556577e-01	ci left: 3.726939e-04	ci right 4.835884e-04	k: 234	n:550000
ATXN1   550000 perm   243 sec   (2268 perm/sec)   p_kst 4.254545e-04   p_cons 9.365709e-01   p_joint 4.454545e-04

Joint ci ratio: 2.483644e-01	ci left: 3.894605e-04	ci right 5.015276e-04	k: 248	n:560000
Cons ci ratio: 1.363597e-03	ci left: 9.358976e-01	ci right 9.371764e-01	k: 524462	n:560000
KS ci ratio: 2.540416e-01	ci left: 3.710536e-04	ci right 4.806515e-04	k: 237	n:560000
ATXN1   560000 perm   249 sec   (2246 perm/sec)   p_kst 4.232143e-04   p_cons 9.365393e-01   p_joint 4.428571e-04

Joint ci ratio: 2.514143e-01	ci left: 3.727603e-04	ci right 4.815453e-04	k: 242	n:570000
Cons ci ratio: 1.350912e-03	ci left: 9.359625e-01	ci right 9.372295e-01	k: 533861	n:570000
KS ci ratio: 2.514143e-01	ci left: 3.727603e-04	ci right 4.815453e-04	k: 242	n:570000
ATXN1   570000 perm   256 sec   (2224 perm/sec)   p_kst 4.245614e-04   p_cons 9.365982e-01   p_joint 4.245614e-04

Joint ci ratio: 2.430534e-01	ci left: 3.938289e-04	ci right 5.043642e-04	k: 259	n:580000
Cons ci ratio: 1.340109e-03	ci left: 9.358884e-01	ci right 9.371451e-01	k: 543181	n:580000
KS ci ratio: 2.488668e-01	ci left: 3.744137e-04	ci right 4.824028e-04	k: 247	n:580000
ATXN1   580000 perm   263 sec   (2203 perm/sec)   p_kst 4.258621e-04   p_cons 9.365190e-01   p_joint 4.465517e-04

Joint ci ratio: 2.468838e-01	ci left: 3.744263e-04	ci right 4.814264e-04	k: 251	n:590000
Cons ci ratio: 1.328953e-03	ci left: 9.358714e-01	ci right 9.371176e-01	k: 552533	n:590000
KS ci ratio: 2.468838e-01	ci left: 3.744263e-04	ci right 4.814264e-04	k: 251	n:590000
ATXN1   590000 perm   271 sec   (2180 perm/sec)   p_kst 4.254237e-04   p_cons 9.364966e-01   p_joint 4.254237e-04

Joint ci ratio: 2.449475e-01	ci left: 3.744417e-04	ci right 4.804793e-04	k: 255	n:600000
Cons ci ratio: 1.317757e-03	ci left: 9.358834e-01	ci right 9.371191e-01	k: 561902	n:600000
KS ci ratio: 2.449475e-01	ci left: 3.744417e-04	ci right 4.804793e-04	k: 255	n:600000
ATXN1   600000 perm   278 sec   (2159 perm/sec)   p_kst 4.250000e-04   p_cons 9.365033e-01   p_joint 4.250000e-04

Joint ci ratio: 2.439967e-01	ci left: 3.713811e-04	ci right 4.760818e-04	k: 257	n:610000
Cons ci ratio: 1.307740e-03	ci left: 9.358127e-01	ci right 9.370389e-01	k: 571221	n:610000
KS ci ratio: 2.439967e-01	ci left: 3.713811e-04	ci right 4.760818e-04	k: 257	n:610000
ATXN1   610000 perm   285 sec   (2138 perm/sec)   p_kst 4.213115e-04   p_cons 9.364279e-01   p_joint 4.213115e-04

Joint ci ratio: 2.421270e-01	ci left: 3.714498e-04	ci right 4.752469e-04	k: 261	n:620000
Cons ci ratio: 1.297314e-03	ci left: 9.358027e-01	ci right 9.370191e-01	k: 580576	n:620000
KS ci ratio: 2.421270e-01	ci left: 3.714498e-04	ci right 4.752469e-04	k: 261	n:620000
ATXN1   620000 perm   293 sec   (2118 perm/sec)   p_kst 4.209677e-04   p_cons 9.364129e-01   p_joint 4.209677e-04

Joint ci ratio: 2.389554e-01	ci left: 3.759953e-04	ci right 4.794826e-04	k: 268	n:630000
Cons ci ratio: 1.286773e-03	ci left: 9.358265e-01	ci right 9.370330e-01	k: 589952	n:630000
KS ci ratio: 2.389554e-01	ci left: 3.759953e-04	ci right 4.794826e-04	k: 268	n:630000
ATXN1   630000 perm   300 sec   (2098 perm/sec)   p_kst 4.253968e-04   p_cons 9.364317e-01   p_joint 4.253968e-04

Joint ci ratio: 2.380724e-01	ci left: 3.730586e-04	ci right 4.753022e-04	k: 270	n:640000
Cons ci ratio: 1.276484e-03	ci left: 9.358496e-01	ci right 9.370465e-01	k: 599328	n:640000
KS ci ratio: 2.380724e-01	ci left: 3.730586e-04	ci right 4.753022e-04	k: 270	n:640000
ATXN1   640000 perm   308 sec   (2079 perm/sec)   p_kst 4.218750e-04   p_cons 9.364500e-01   p_joint 4.218750e-04

Joint ci ratio: 2.376350e-01	ci left: 3.687659e-04	ci right 4.696200e-04	k: 271	n:650000
Cons ci ratio: 1.266095e-03	ci left: 9.359045e-01	ci right 9.370917e-01	k: 608725	n:650000
KS ci ratio: 2.376350e-01	ci left: 3.687659e-04	ci right 4.696200e-04	k: 271	n:650000
ATXN1   650000 perm   316 sec   (2060 perm/sec)   p_kst 4.169231e-04   p_cons 9.365000e-01   p_joint 4.169231e-04

Joint ci ratio: 2.354804e-01	ci left: 3.703054e-04	ci right 4.705284e-04	k: 276	n:660000
Cons ci ratio: 1.255762e-03	ci left: 9.359760e-01	ci right 9.371535e-01	k: 618134	n:660000
KS ci ratio: 2.354804e-01	ci left: 3.703054e-04	ci right 4.705284e-04	k: 276	n:660000
ATXN1   660000 perm   323 sec   (2041 perm/sec)   p_kst 4.181818e-04   p_cons 9.365667e-01   p_joint 4.181818e-04

Joint ci ratio: 2.342157e-01	ci left: 3.689926e-04	ci right 4.682462e-04	k: 279	n:670000
Cons ci ratio: 1.246147e-03	ci left: 9.360004e-01	ci right 9.371690e-01	k: 627513	n:670000
KS ci ratio: 2.342157e-01	ci left: 3.689926e-04	ci right 4.682462e-04	k: 279	n:670000
ATXN1   670000 perm   331 sec   (2023 perm/sec)   p_kst 4.164179e-04   p_cons 9.365866e-01   p_joint 4.164179e-04

Joint ci ratio: 2.313413e-01	ci left: 3.732601e-04	ci right 4.722535e-04	k: 286	n:680000
Cons ci ratio: 1.236917e-03	ci left: 9.360079e-01	ci right 9.371678e-01	k: 636881	n:680000
KS ci ratio: 2.313413e-01	ci left: 3.732601e-04	ci right 4.722535e-04	k: 286	n:680000
ATXN1   680000 perm   339 sec   (2005 perm/sec)   p_kst 4.205882e-04   p_cons 9.365897e-01   p_joint 4.205882e-04

Joint ci ratio: 2.293519e-01	ci left: 3.746789e-04	ci right 4.730730e-04	k: 291	n:690000
Cons ci ratio: 1.227979e-03	ci left: 9.360065e-01	ci right 9.371580e-01	k: 646243	n:690000
KS ci ratio: 2.293519e-01	ci left: 3.746789e-04	ci right 4.730730e-04	k: 291	n:690000
ATXN1   690000 perm   347 sec   (1987 perm/sec)   p_kst 4.217391e-04   p_cons 9.365841e-01   p_joint 4.217391e-04

Joint ci ratio: 2.277970e-01	ci left: 3.747134e-04	ci right 4.723557e-04	k: 295	n:700000
Cons ci ratio: 1.219071e-03	ci left: 9.360209e-01	ci right 9.371641e-01	k: 655616	n:700000
KS ci ratio: 2.277970e-01	ci left: 3.747134e-04	ci right 4.723557e-04	k: 295	n:700000
ATXN1   700000 perm   355 sec   (1970 perm/sec)   p_kst 4.214286e-04   p_cons 9.365943e-01   p_joint 4.214286e-04

Joint ci ratio: 2.258970e-01	ci left: 3.760779e-04	ci right 4.731445e-04	k: 300	n:710000
Cons ci ratio: 1.210699e-03	ci left: 9.360010e-01	ci right 9.371363e-01	k: 664965	n:710000
KS ci ratio: 2.258970e-01	ci left: 3.760779e-04	ci right 4.731445e-04	k: 300	n:710000
ATXN1   710000 perm   364 sec   (1953 perm/sec)   p_kst 4.225352e-04   p_cons 9.365704e-01   p_joint 4.225352e-04

Joint ci ratio: 2.251506e-01	ci left: 3.734754e-04	ci right 4.695076e-04	k: 302	n:720000
Cons ci ratio: 1.202272e-03	ci left: 9.360040e-01	ci right 9.371314e-01	k: 674330	n:720000
KS ci ratio: 2.251506e-01	ci left: 3.734754e-04	ci right 4.695076e-04	k: 302	n:720000
ATXN1   720000 perm   372 sec   (1936 perm/sec)   p_kst 4.194444e-04   p_cons 9.365694e-01   p_joint 4.194444e-04

Joint ci ratio: 2.244115e-01	ci left: 3.709447e-04	ci right 4.659698e-04	k: 304	n:730000
Cons ci ratio: 1.193426e-03	ci left: 9.360661e-01	ci right 9.371852e-01	k: 683738	n:730000
KS ci ratio: 2.244115e-01	ci left: 3.709447e-04	ci right 4.659698e-04	k: 304	n:730000
ATXN1   730000 perm   380 sec   (1919 perm/sec)   p_kst 4.164384e-04   p_cons 9.366274e-01   p_joint 4.164384e-04

Joint ci ratio: 2.233161e-01	ci left: 3.697586e-04	ci right 4.639540e-04	k: 307	n:740000
Cons ci ratio: 1.185406e-03	ci left: 9.360628e-01	ci right 9.371744e-01	k: 693099	n:740000
KS ci ratio: 2.233161e-01	ci left: 3.697586e-04	ci right 4.639540e-04	k: 307	n:740000
ATXN1   740000 perm   389 sec   (1903 perm/sec)   p_kst 4.148649e-04   p_cons 9.366203e-01   p_joint 4.148649e-04

Joint ci ratio: 2.204706e-01	ci left: 3.749025e-04	ci right 4.690263e-04	k: 315	n:750000
Cons ci ratio: 1.177334e-03	ci left: 9.360810e-01	ci right 9.371850e-01	k: 702476	n:750000
KS ci ratio: 2.204706e-01	ci left: 3.749025e-04	ci right 4.690263e-04	k: 315	n:750000
ATXN1   750000 perm   397 sec   (1887 perm/sec)   p_kst 4.200000e-04   p_cons 9.366347e-01   p_joint 4.200000e-04

Joint ci ratio: 2.187467e-01	ci left: 3.761867e-04	ci right 4.697951e-04	k: 320	n:760000
Cons ci ratio: 1.169787e-03	ci left: 9.360617e-01	ci right 9.371586e-01	k: 711825	n:760000
KS ci ratio: 2.187467e-01	ci left: 3.761867e-04	ci right 4.697951e-04	k: 320	n:760000
ATXN1   760000 perm   406 sec   (1872 perm/sec)   p_kst 4.210526e-04   p_cons 9.366118e-01   p_joint 4.210526e-04

Joint ci ratio: 2.170626e-01	ci left: 3.774403e-04	ci right 4.705412e-04	k: 325	n:770000
Cons ci ratio: 1.162422e-03	ci left: 9.360391e-01	ci right 9.371291e-01	k: 721171	n:770000
KS ci ratio: 2.170626e-01	ci left: 3.774403e-04	ci right 4.705412e-04	k: 325	n:770000
ATXN1   770000 perm   415 sec   (1856 perm/sec)   p_kst 4.220779e-04   p_cons 9.365857e-01   p_joint 4.220779e-04

Joint ci ratio: 2.154168e-01	ci left: 3.786644e-04	ci right 4.712655e-04	k: 330	n:780000
Cons ci ratio: 1.155256e-03	ci left: 9.360106e-01	ci right 9.370938e-01	k: 730512	n:780000
KS ci ratio: 2.154168e-01	ci left: 3.786644e-04	ci right 4.712655e-04	k: 330	n:780000
ATXN1   780000 perm   424 sec   (1841 perm/sec)   p_kst 4.230769e-04   p_cons 9.365538e-01   p_joint 4.230769e-04

Joint ci ratio: 2.138079e-01	ci left: 3.798602e-04	ci right 4.719688e-04	k: 335	n:790000
Cons ci ratio: 1.147989e-03	ci left: 9.360070e-01	ci right 9.370834e-01	k: 739872	n:790000
KS ci ratio: 2.138079e-01	ci left: 3.798602e-04	ci right 4.719688e-04	k: 335	n:790000
ATXN1   790000 perm   433 sec   (1826 perm/sec)   p_kst 4.240506e-04   p_cons 9.365468e-01   p_joint 4.240506e-04

Joint ci ratio: 2.122345e-01	ci left: 3.810285e-04	ci right 4.726521e-04	k: 340	n:800000
Cons ci ratio: 1.140905e-03	ci left: 9.359986e-01	ci right 9.370683e-01	k: 749228	n:800000
KS ci ratio: 2.122345e-01	ci left: 3.810285e-04	ci right 4.726521e-04	k: 340	n:800000
ATXN1   800000 perm   442 sec   (1812 perm/sec)   p_kst 4.250000e-04   p_cons 9.365350e-01   p_joint 4.250000e-04

Joint ci ratio: 2.116152e-01	ci left: 3.786625e-04	ci right 4.694170e-04	k: 342	n:810000
Cons ci ratio: 1.133750e-03	ci left: 9.360114e-01	ci right 9.370744e-01	k: 758601	n:810000
KS ci ratio: 2.116152e-01	ci left: 3.786625e-04	ci right 4.694170e-04	k: 342	n:810000
ATXN1   810000 perm   451 sec   (1797 perm/sec)   p_kst 4.222222e-04   p_cons 9.365444e-01   p_joint 4.222222e-04

Joint ci ratio: 2.085955e-01	ci left: 3.855984e-04	ci right 4.765280e-04	k: 352	n:820000
Cons ci ratio: 1.126983e-03	ci left: 9.359970e-01	ci right 9.370536e-01	k: 767952	n:820000
KS ci ratio: 2.085955e-01	ci left: 3.855984e-04	ci right 4.765280e-04	k: 352	n:820000
ATXN1   820000 perm   460 sec   (1783 perm/sec)   p_kst 4.292683e-04   p_cons 9.365268e-01   p_joint 4.292683e-04

Joint ci ratio: 2.077149e-01	ci left: 3.843786e-04	ci right 4.745893e-04	k: 355	n:830000
Cons ci ratio: 1.119881e-03	ci left: 9.360313e-01	ci right 9.370813e-01	k: 777343	n:830000
KS ci ratio: 2.077149e-01	ci left: 3.843786e-04	ci right 4.745893e-04	k: 355	n:830000
ATXN1   830000 perm   469 sec   (1769 perm/sec)   p_kst 4.277108e-04   p_cons 9.365578e-01   p_joint 4.277108e-04

Joint ci ratio: 2.062713e-01	ci left: 3.854466e-04	ci right 4.751999e-04	k: 360	n:840000
Cons ci ratio: 1.113067e-03	ci left: 9.360481e-01	ci right 9.370917e-01	k: 786720	n:840000
KS ci ratio: 2.062713e-01	ci left: 3.854466e-04	ci right 4.751999e-04	k: 360	n:840000
ATXN1   840000 perm   479 sec   (1755 perm/sec)   p_kst 4.285714e-04   p_cons 9.365714e-01   p_joint 4.285714e-04

Joint ci ratio: 2.045780e-01	ci left: 3.876077e-04	ci right 4.770307e-04	k: 366	n:850000
Cons ci ratio: 1.106103e-03	ci left: 9.360941e-01	ci right 9.371312e-01	k: 796122	n:850000
KS ci ratio: 2.045780e-01	ci left: 3.876077e-04	ci right 4.770307e-04	k: 366	n:850000
ATXN1   850000 perm   488 sec   (1742 perm/sec)   p_kst 4.305882e-04   p_cons 9.366141e-01   p_joint 4.305882e-04

Joint ci ratio: 2.034722e-01	ci left: 3.875142e-04	ci right 4.763723e-04	k: 370	n:860000
Cons ci ratio: 1.099967e-03	ci left: 9.360631e-01	ci right 9.370944e-01	k: 805459	n:860000
KS ci ratio: 2.034722e-01	ci left: 3.875142e-04	ci right 4.763723e-04	k: 370	n:860000
ATXN1   860000 perm   498 sec   (1728 perm/sec)   p_kst 4.302326e-04   p_cons 9.365802e-01   p_joint 4.302326e-04

Joint ci ratio: 2.021148e-01	ci left: 3.885153e-04	ci right 4.769353e-04	k: 375	n:870000
Cons ci ratio: 1.093561e-03	ci left: 9.360732e-01	ci right 9.370986e-01	k: 814831	n:870000
KS ci ratio: 2.021148e-01	ci left: 3.885153e-04	ci right 4.769353e-04	k: 375	n:870000
ATXN1   870000 perm   508 sec   (1714 perm/sec)   p_kst 4.310345e-04   p_cons 9.365874e-01   p_joint 4.310345e-04

Joint ci ratio: 2.010482e-01	ci left: 3.884164e-04	ci right 4.762901e-04	k: 379	n:880000
Cons ci ratio: 1.087381e-03	ci left: 9.360706e-01	ci right 9.370901e-01	k: 824192	n:880000
KS ci ratio: 2.010482e-01	ci left: 3.884164e-04	ci right 4.762901e-04	k: 379	n:880000
ATXN1   880000 perm   517 sec   (1701 perm/sec)   p_kst 4.306818e-04   p_cons 9.365818e-01   p_joint 4.306818e-04

Joint ci ratio: 2.007846e-01	ci left: 3.851191e-04	ci right 4.721187e-04	k: 380	n:890000
Cons ci ratio: 1.081713e-03	ci left: 9.360230e-01	ci right 9.370371e-01	k: 833513	n:890000
KS ci ratio: 2.007846e-01	ci left: 3.851191e-04	ci right 4.721187e-04	k: 380	n:890000
ATXN1   890000 perm   527 sec   (1688 perm/sec)   p_kst 4.269663e-04   p_cons 9.365315e-01   p_joint 4.269663e-04

Joint ci ratio: 1.992218e-01	ci left: 3.871729e-04	ci right 4.738730e-04	k: 386	n:900000
Cons ci ratio: 1.075871e-03	ci left: 9.360054e-01	ci right 9.370140e-01	k: 842860	n:900000
KS ci ratio: 1.992218e-01	ci left: 3.871729e-04	ci right 4.738730e-04	k: 386	n:900000
ATXN1   900000 perm   537 sec   (1675 perm/sec)   p_kst 4.288889e-04   p_cons 9.365111e-01   p_joint 4.288889e-04

Joint ci ratio: 1.987093e-01	ci left: 3.850065e-04	ci right 4.709728e-04	k: 388	n:910000
Cons ci ratio: 1.070290e-03	ci left: 9.359695e-01	ci right 9.369728e-01	k: 852190	n:910000
KS ci ratio: 1.987093e-01	ci left: 3.850065e-04	ci right 4.709728e-04	k: 388	n:910000
ATXN1   910000 perm   547 sec   (1663 perm/sec)   p_kst 4.263736e-04   p_cons 9.364725e-01   p_joint 4.263736e-04

Joint ci ratio: 1.979476e-01	ci left: 3.839206e-04	ci right 4.692761e-04	k: 391	n:920000
Cons ci ratio: 1.064629e-03	ci left: 9.359529e-01	ci right 9.369509e-01	k: 861537	n:920000
KS ci ratio: 1.979476e-01	ci left: 3.839206e-04	ci right 4.692761e-04	k: 391	n:920000
ATXN1   920000 perm   557 sec   (1651 perm/sec)   p_kst 4.250000e-04   p_cons 9.364533e-01   p_joint 4.250000e-04

Joint ci ratio: 1.969454e-01	ci left: 3.838809e-04	ci right 4.687436e-04	k: 395	n:930000
Cons ci ratio: 1.059153e-03	ci left: 9.359259e-01	ci right 9.369187e-01	k: 870874	n:930000
KS ci ratio: 1.969454e-01	ci left: 3.838809e-04	ci right 4.687436e-04	k: 395	n:930000
ATXN1   930000 perm   568 sec   (1639 perm/sec)   p_kst 4.247312e-04   p_cons 9.364237e-01   p_joint 4.247312e-04

Joint ci ratio: 1.966975e-01	ci left: 3.808084e-04	ci right 4.648732e-04	k: 396	n:940000
Cons ci ratio: 1.053704e-03	ci left: 9.359059e-01	ci right 9.368936e-01	k: 880217	n:940000
KS ci ratio: 1.966975e-01	ci left: 3.808084e-04	ci right 4.648732e-04	k: 396	n:940000
ATXN1   940000 perm   578 sec   (1627 perm/sec)   p_kst 4.212766e-04   p_cons 9.364011e-01   p_joint 4.212766e-04

Joint ci ratio: 1.959586e-01	ci left: 3.798025e-04	ci right 4.632928e-04	k: 399	n:950000
Cons ci ratio: 1.048070e-03	ci left: 9.359169e-01	ci right 9.368994e-01	k: 889589	n:950000
KS ci ratio: 1.959586e-01	ci left: 3.798025e-04	ci right 4.632928e-04	k: 399	n:950000
ATXN1   950000 perm   588 sec   (1615 perm/sec)   p_kst 4.200000e-04   p_cons 9.364095e-01   p_joint 4.200000e-04

Joint ci ratio: 1.959591e-01	ci left: 3.758462e-04	ci right 4.584669e-04	k: 399	n:960000
Cons ci ratio: 1.042734e-03	ci left: 9.359037e-01	ci right 9.368811e-01	k: 898938	n:960000
KS ci ratio: 1.959591e-01	ci left: 3.758462e-04	ci right 4.584669e-04	k: 399	n:960000
ATXN1   960000 perm   598 sec   (1604 perm/sec)   p_kst 4.156250e-04   p_cons 9.363938e-01   p_joint 4.156250e-04

Joint ci ratio: 1.945055e-01	ci left: 3.778547e-04	ci right 4.602279e-04	k: 405	n:970000
Cons ci ratio: 1.037408e-03	ci left: 9.358991e-01	ci right 9.368715e-01	k: 908295	n:970000
KS ci ratio: 1.945055e-01	ci left: 3.778547e-04	ci right 4.602279e-04	k: 405	n:970000
ATXN1   970000 perm   609 sec   (1593 perm/sec)   p_kst 4.175258e-04   p_cons 9.363866e-01   p_joint 4.175258e-04

Joint ci ratio: 1.935544e-01	ci left: 3.778824e-04	ci right 4.598114e-04	k: 409	n:980000
Cons ci ratio: 1.032109e-03	ci left: 9.359007e-01	ci right 9.368681e-01	k: 917658	n:980000
KS ci ratio: 1.935544e-01	ci left: 3.778824e-04	ci right 4.598114e-04	k: 409	n:980000
ATXN1   980000 perm   620 sec   (1582 perm/sec)   p_kst 4.173469e-04   p_cons 9.363857e-01   p_joint 4.173469e-04

Joint ci ratio: 1.926171e-01	ci left: 3.779105e-04	ci right 4.594023e-04	k: 413	n:990000
Cons ci ratio: 1.027099e-03	ci left: 9.358780e-01	ci right 9.368407e-01	k: 926997	n:990000
KS ci ratio: 1.926171e-01	ci left: 3.779105e-04	ci right 4.594023e-04	k: 413	n:990000
ATXN1   990000 perm   630 sec   (1571 perm/sec)   p_kst 4.171717e-04   p_cons 9.363606e-01   p_joint 4.171717e-04

Joint ci ratio: 1.905565e-01	ci left: 3.826999e-04	ci right 4.642393e-04	k: 422	n:1000000
Cons ci ratio: 1.021759e-03	ci left: 9.359029e-01	ci right 9.368606e-01	k: 936383	n:1000000
KS ci ratio: 1.905565e-01	ci left: 3.826999e-04	ci right 4.642393e-04	k: 422	n:1000000
ATXN1   1000000 perm   641 sec   (1560 perm/sec)   p_kst 4.220000e-04   p_cons 9.363830e-01   p_joint 4.220000e-04

Joint ci ratio: 1.896619e-01	ci left: 3.826827e-04	ci right 4.637916e-04	k: 426	n:1010000
Cons ci ratio: 1.016780e-03	ci left: 9.358945e-01	ci right 9.368476e-01	k: 945736	n:1010000
KS ci ratio: 1.896619e-01	ci left: 3.826827e-04	ci right 4.637916e-04	k: 426	n:1010000
ATXN1   1010000 perm   652 sec   (1549 perm/sec)   p_kst 4.217822e-04   p_cons 9.363723e-01   p_joint 4.217822e-04

Joint ci ratio: 1.885611e-01	ci left: 3.836008e-04	ci right 4.643783e-04	k: 431	n:1020000
Cons ci ratio: 1.011806e-03	ci left: 9.358942e-01	ci right 9.368426e-01	k: 955097	n:1020000
KS ci ratio: 1.885611e-01	ci left: 3.836008e-04	ci right 4.643783e-04	k: 431	n:1020000
ATXN1   1020000 perm   663 sec   (1539 perm/sec)   p_kst 4.225490e-04   p_cons 9.363696e-01   p_joint 4.225490e-04

Joint ci ratio: 1.879098e-01	ci left: 3.826519e-04	ci right 4.629195e-04	k: 434	n:1030000
Cons ci ratio: 1.006502e-03	ci left: 9.359416e-01	ci right 9.368851e-01	k: 964507	n:1030000
KS ci ratio: 1.879098e-01	ci left: 3.826519e-04	ci right 4.629195e-04	k: 434	n:1030000
ATXN1   1030000 perm   674 sec   (1528 perm/sec)   p_kst 4.213592e-04   p_cons 9.364146e-01   p_joint 4.213592e-04

Joint ci ratio: 1.874795e-01	ci left: 3.808052e-04	ci right 4.604818e-04	k: 436	n:1040000
Cons ci ratio: 1.001572e-03	ci left: 9.359534e-01	ci right 9.368922e-01	k: 973881	n:1040000
KS ci ratio: 1.874795e-01	ci left: 3.808052e-04	ci right 4.604818e-04	k: 436	n:1040000
ATXN1   1040000 perm   685 sec   (1518 perm/sec)   p_kst 4.192308e-04   p_cons 9.364240e-01   p_joint 4.192308e-04

Joint ci ratio: 1.874799e-01	ci left: 3.771784e-04	ci right 4.560963e-04	k: 436	n:1050000
Cons ci ratio: 9.967449e-04	ci left: 9.359612e-01	ci right 9.368955e-01	k: 983251	n:1050000
KS ci ratio: 1.874799e-01	ci left: 3.771784e-04	ci right 4.560963e-04	k: 436	n:1050000
ATXN1   1050000 perm   696 sec   (1508 perm/sec)   p_kst 4.152381e-04   p_cons 9.364295e-01   p_joint 4.152381e-04

Joint ci ratio: 1.866277e-01	ci left: 3.772170e-04	ci right 4.557436e-04	k: 440	n:1060000
Cons ci ratio: 9.921287e-04	ci left: 9.359517e-01	ci right 9.368817e-01	k: 992603	n:1060000
KS ci ratio: 1.866277e-01	ci left: 3.772170e-04	ci right 4.557436e-04	k: 440	n:1060000
ATXN1   1060000 perm   708 sec   (1498 perm/sec)   p_kst 4.150943e-04   p_cons 9.364179e-01   p_joint 4.150943e-04

Joint ci ratio: 1.855786e-01	ci left: 3.781468e-04	ci right 4.563747e-04	k: 445	n:1070000
Cons ci ratio: 9.874443e-04	ci left: 9.359585e-01	ci right 9.368840e-01	k: 1001972	n:1070000
KS ci ratio: 1.855786e-01	ci left: 3.781468e-04	ci right 4.563747e-04	k: 445	n:1070000
ATXN1   1070000 perm   719 sec   (1488 perm/sec)   p_kst 4.158879e-04   p_cons 9.364224e-01   p_joint 4.158879e-04

Joint ci ratio: 1.847520e-01	ci left: 3.781775e-04	ci right 4.560242e-04	k: 449	n:1080000
Cons ci ratio: 9.828180e-04	ci left: 9.359660e-01	ci right 9.368872e-01	k: 1011342	n:1080000
KS ci ratio: 1.847520e-01	ci left: 3.781775e-04	ci right 4.560242e-04	k: 449	n:1080000
ATXN1   1080000 perm   730 sec   (1479 perm/sec)   p_kst 4.157407e-04   p_cons 9.364278e-01   p_joint 4.157407e-04

Joint ci ratio: 1.843430e-01	ci left: 3.764581e-04	ci right 4.537600e-04	k: 451	n:1090000
Cons ci ratio: 9.781807e-04	ci left: 9.359826e-01	ci right 9.368995e-01	k: 1020722	n:1090000
KS ci ratio: 1.843430e-01	ci left: 3.764581e-04	ci right 4.537600e-04	k: 451	n:1090000
ATXN1   1090000 perm   742 sec   (1470 perm/sec)   p_kst 4.137615e-04   p_cons 9.364422e-01   p_joint 4.137615e-04

Joint ci ratio: 1.833317e-01	ci left: 3.773720e-04	ci right 4.543893e-04	k: 456	n:1100000
Cons ci ratio: 9.736901e-04	ci left: 9.359889e-01	ci right 9.369016e-01	k: 1030091	n:1100000
KS ci ratio: 1.833317e-01	ci left: 3.773720e-04	ci right 4.543893e-04	k: 456	n:1100000
ATXN1   1100000 perm   753 sec   (1460 perm/sec)   p_kst 4.145455e-04   p_cons 9.364464e-01   p_joint 4.145455e-04

Joint ci ratio: 1.829320e-01	ci left: 3.756914e-04	ci right 4.521801e-04	k: 458	n:1110000
Cons ci ratio: 9.693783e-04	ci left: 9.359806e-01	ci right 9.368892e-01	k: 1039444	n:1110000
KS ci ratio: 1.829320e-01	ci left: 3.756914e-04	ci right 4.521801e-04	k: 458	n:1110000
ATXN1   1110000 perm   765 sec   (1451 perm/sec)   p_kst 4.126126e-04   p_cons 9.364360e-01   p_joint 4.126126e-04

Joint ci ratio: 1.821401e-01	ci left: 3.757453e-04	ci right 4.518772e-04	k: 462	n:1120000
Cons ci ratio: 9.649857e-04	ci left: 9.359895e-01	ci right 9.368940e-01	k: 1048816	n:1120000
KS ci ratio: 1.821401e-01	ci left: 3.757453e-04	ci right 4.518772e-04	k: 462	n:1120000
ATXN1   1120000 perm   777 sec   (1442 perm/sec)   p_kst 4.125000e-04   p_cons 9.364429e-01   p_joint 4.125000e-04

Joint ci ratio: 1.813584e-01	ci left: 3.757989e-04	ci right 4.515790e-04	k: 466	n:1130000
Cons ci ratio: 9.607236e-04	ci left: 9.359893e-01	ci right 9.368899e-01	k: 1058178	n:1130000
KS ci ratio: 1.813584e-01	ci left: 3.757989e-04	ci right 4.515790e-04	k: 466	n:1130000
ATXN1   1130000 perm   789 sec   (1432 perm/sec)   p_kst 4.123894e-04   p_cons 9.364407e-01   p_joint 4.123894e-04

Joint ci ratio: 1.813587e-01	ci left: 3.725023e-04	ci right 4.476178e-04	k: 466	n:1140000
Cons ci ratio: 9.567149e-04	ci left: 9.359646e-01	ci right 9.368613e-01	k: 1067512	n:1140000
KS ci ratio: 1.813587e-01	ci left: 3.725023e-04	ci right 4.476178e-04	k: 466	n:1140000
ATXN1   1140000 perm   801 sec   (1423 perm/sec)   p_kst 4.087719e-04   p_cons 9.364140e-01   p_joint 4.087719e-04

Joint ci ratio: 1.807791e-01	ci left: 3.717536e-04	ci right 4.464523e-04	k: 469	n:1150000
Cons ci ratio: 9.529088e-04	ci left: 9.359210e-01	ci right 9.368142e-01	k: 1076824	n:1150000
KS ci ratio: 1.807791e-01	ci left: 3.717536e-04	ci right 4.464523e-04	k: 469	n:1150000
ATXN1   1150000 perm   813 sec   (1415 perm/sec)   p_kst 4.078261e-04   p_cons 9.363687e-01   p_joint 4.078261e-04

Joint ci ratio: 1.802050e-01	ci left: 3.710182e-04	ci right 4.453065e-04	k: 472	n:1160000
Cons ci ratio: 9.487491e-04	ci left: 9.359284e-01	ci right 9.368177e-01	k: 1086194	n:1160000
KS ci ratio: 1.802050e-01	ci left: 3.710182e-04	ci right 4.453065e-04	k: 472	n:1160000
ATXN1   1160000 perm   825 sec   (1406 perm/sec)   p_kst 4.068966e-04   p_cons 9.363741e-01   p_joint 4.068966e-04

Joint ci ratio: 1.792599e-01	ci left: 3.719284e-04	ci right 4.459660e-04	k: 477	n:1170000
Cons ci ratio: 9.447790e-04	ci left: 9.359186e-01	ci right 9.368041e-01	k: 1095544	n:1170000
KS ci ratio: 1.792599e-01	ci left: 3.719284e-04	ci right 4.459660e-04	k: 477	n:1170000
ATXN1   1170000 perm   837 sec   (1397 perm/sec)   p_kst 4.076923e-04   p_cons 9.363624e-01   p_joint 4.076923e-04

Joint ci ratio: 1.785146e-01	ci left: 3.720145e-04	ci right 4.457281e-04	k: 481	n:1180000
Cons ci ratio: 9.405505e-04	ci left: 9.359480e-01	ci right 9.368295e-01	k: 1104940	n:1180000
KS ci ratio: 1.785146e-01	ci left: 3.720145e-04	ci right 4.457281e-04	k: 481	n:1180000
ATXN1   1180000 perm   850 sec   (1389 perm/sec)   p_kst 4.076271e-04   p_cons 9.363898e-01   p_joint 4.076271e-04

Joint ci ratio: 1.772320e-01	ci left: 3.745088e-04	ci right 4.481264e-04	k: 488	n:1190000
Cons ci ratio: 9.368803e-04	ci left: 9.359128e-01	ci right 9.367909e-01	k: 1114260	n:1190000
KS ci ratio: 1.772320e-01	ci left: 3.745088e-04	ci right 4.481264e-04	k: 488	n:1190000
ATXN1   1190000 perm   862 sec   (1380 perm/sec)   p_kst 4.100840e-04   p_cons 9.363529e-01   p_joint 4.100840e-04

Joint ci ratio: 1.761545e-01	ci left: 3.761668e-04	ci right 4.496129e-04	k: 494	n:1200000
Cons ci ratio: 9.330175e-04	ci left: 9.359084e-01	ci right 9.367828e-01	k: 1123616	n:1200000
KS ci ratio: 1.761545e-01	ci left: 3.761668e-04	ci right 4.496129e-04	k: 494	n:1200000
ATXN1   1200000 perm   875 sec   (1372 perm/sec)   p_kst 4.116667e-04   p_cons 9.363467e-01   p_joint 4.116667e-04

Joint ci ratio: 1.749218e-01	ci left: 3.785890e-04	ci right 4.519361e-04	k: 501	n:1210000
Cons ci ratio: 9.291506e-04	ci left: 9.359107e-01	ci right 9.367815e-01	k: 1132980	n:1210000
KS ci ratio: 1.749218e-01	ci left: 3.785890e-04	ci right 4.519361e-04	k: 501	n:1210000
ATXN1   1210000 perm   888 sec   (1363 perm/sec)   p_kst 4.140496e-04   p_cons 9.363471e-01   p_joint 4.140496e-04

Joint ci ratio: 1.740571e-01	ci left: 3.794052e-04	ci right 4.525089e-04	k: 506	n:1220000
Cons ci ratio: 9.255413e-04	ci left: 9.358858e-01	ci right 9.367532e-01	k: 1142311	n:1220000
KS ci ratio: 1.740571e-01	ci left: 3.794052e-04	ci right 4.525089e-04	k: 506	n:1220000
ATXN1   1220000 perm   900 sec   (1355 perm/sec)   p_kst 4.147541e-04   p_cons 9.363205e-01   p_joint 4.147541e-04

Joint ci ratio: 1.730361e-01	ci left: 3.809868e-04	ci right 4.539196e-04	k: 512	n:1230000
Cons ci ratio: 9.216091e-04	ci left: 9.359086e-01	ci right 9.367723e-01	k: 1151700	n:1230000
KS ci ratio: 1.730361e-01	ci left: 3.809868e-04	ci right 4.539196e-04	k: 512	n:1230000
ATXN1   1230000 perm   913 sec   (1347 perm/sec)   p_kst 4.162602e-04   p_cons 9.363415e-01   p_joint 4.162602e-04

Joint ci ratio: 1.726999e-01	ci left: 3.794574e-04	ci right 4.519416e-04	k: 514	n:1240000
Cons ci ratio: 9.181115e-04	ci left: 9.358809e-01	ci right 9.367413e-01	k: 1161027	n:1240000
KS ci ratio: 1.726999e-01	ci left: 3.794574e-04	ci right 4.519416e-04	k: 514	n:1240000
ATXN1   1240000 perm   926 sec   (1339 perm/sec)   p_kst 4.145161e-04   p_cons 9.363121e-01   p_joint 4.145161e-04

Joint ci ratio: 1.713737e-01	ci left: 3.825463e-04	ci right 4.550013e-04	k: 522	n:1250000
Cons ci ratio: 9.142974e-04	ci left: 9.359002e-01	ci right 9.367570e-01	k: 1170412	n:1250000
KS ci ratio: 1.713737e-01	ci left: 3.825463e-04	ci right 4.550013e-04	k: 522	n:1250000
ATXN1   1250000 perm   939 sec   (1331 perm/sec)   p_kst 4.176000e-04   p_cons 9.363296e-01   p_joint 4.176000e-04

Joint ci ratio: 1.708844e-01	ci left: 3.817891e-04	ci right 4.538731e-04	k: 525	n:1260000
Cons ci ratio: 9.107183e-04	ci left: 9.358945e-01	ci right 9.367480e-01	k: 1179766	n:1260000
KS ci ratio: 1.708844e-01	ci left: 3.817891e-04	ci right 4.538731e-04	k: 525	n:1260000
ATXN1   1260000 perm   952 sec   (1323 perm/sec)   p_kst 4.166667e-04   p_cons 9.363222e-01   p_joint 4.166667e-04

Joint ci ratio: 1.695993e-01	ci left: 3.848138e-04	ci right 4.568665e-04	k: 533	n:1270000
Cons ci ratio: 9.069893e-04	ci left: 9.359142e-01	ci right 9.367642e-01	k: 1189152	n:1270000
KS ci ratio: 1.695993e-01	ci left: 3.848138e-04	ci right 4.568665e-04	k: 533	n:1270000
ATXN1   1270000 perm   965 sec   (1315 perm/sec)   p_kst 4.196850e-04   p_cons 9.363402e-01   p_joint 4.196850e-04

Joint ci ratio: 1.683427e-01	ci left: 3.877932e-04	ci right 4.598113e-04	k: 541	n:1280000
Cons ci ratio: 9.035187e-04	ci left: 9.359053e-01	ci right 9.367521e-01	k: 1198502	n:1280000
KS ci ratio: 1.683427e-01	ci left: 3.877932e-04	ci right 4.598113e-04	k: 541	n:1280000
ATXN1   1280000 perm   979 sec   (1308 perm/sec)   p_kst 4.226563e-04   p_cons 9.363297e-01   p_joint 4.226563e-04

Joint ci ratio: 1.680331e-01	ci left: 3.862721e-04	ci right 4.578625e-04	k: 543	n:1290000
Cons ci ratio: 8.998770e-04	ci left: 9.359246e-01	ci right 9.367680e-01	k: 1207888	n:1290000
KS ci ratio: 1.680331e-01	ci left: 3.862721e-04	ci right 4.578625e-04	k: 543	n:1290000
ATXN1   1290000 perm   992 sec   (1300 perm/sec)   p_kst 4.209302e-04   p_cons 9.363473e-01   p_joint 4.209302e-04

Joint ci ratio: 1.668108e-01	ci left: 3.891969e-04	ci right 4.607518e-04	k: 551	n:1300000
Cons ci ratio: 8.963773e-04	ci left: 9.359305e-01	ci right 9.367706e-01	k: 1217257	n:1300000
KS ci ratio: 1.668108e-01	ci left: 3.891969e-04	ci right 4.607518e-04	k: 551	n:1300000
ATXN1   1300000 perm   1006 sec   (1292 perm/sec)   p_kst 4.238462e-04   p_cons 9.363515e-01   p_joint 4.238462e-04

Joint ci ratio: 1.660604e-01	ci left: 3.898837e-04	ci right 4.612103e-04	k: 556	n:1310000
Cons ci ratio: 8.929180e-04	ci left: 9.359363e-01	ci right 9.367732e-01	k: 1226626	n:1310000
KS ci ratio: 1.660604e-01	ci left: 3.898837e-04	ci right 4.612103e-04	k: 556	n:1310000
ATXN1   1310000 perm   1019 sec   (1285 perm/sec)   p_kst 4.244275e-04   p_cons 9.363557e-01   p_joint 4.244275e-04

Joint ci ratio: 1.653200e-01	ci left: 3.905609e-04	ci right 4.616610e-04	k: 561	n:1320000
Cons ci ratio: 8.894080e-04	ci left: 9.359542e-01	ci right 9.367878e-01	k: 1236011	n:1320000
KS ci ratio: 1.653200e-01	ci left: 3.905609e-04	ci right 4.616610e-04	k: 561	n:1320000
ATXN1   1320000 perm   1033 sec   (1278 perm/sec)   p_kst 4.250000e-04   p_cons 9.363720e-01   p_joint 4.250000e-04

Joint ci ratio: 1.641555e-01	ci left: 3.933914e-04	ci right 4.644526e-04	k: 569	n:1330000
Cons ci ratio: 8.860621e-04	ci left: 9.359553e-01	ci right 9.367857e-01	k: 1245374	n:1330000
KS ci ratio: 1.641555e-01	ci left: 3.933914e-04	ci right 4.644526e-04	k: 569	n:1330000
ATXN1   1330000 perm   1047 sec   (1270 perm/sec)   p_kst 4.278195e-04   p_cons 9.363714e-01   p_joint 4.278195e-04

Joint ci ratio: 1.631565e-01	ci left: 3.954657e-04	ci right 4.664242e-04	k: 576	n:1340000
Cons ci ratio: 8.826762e-04	ci left: 9.359668e-01	ci right 9.367940e-01	k: 1254751	n:1340000
KS ci ratio: 1.631565e-01	ci left: 3.954657e-04	ci right 4.664242e-04	k: 576	n:1340000
ATXN1   1340000 perm   1061 sec   (1263 perm/sec)   p_kst 4.298507e-04   p_cons 9.363813e-01   p_joint 4.298507e-04

Joint ci ratio: 1.628746e-01	ci left: 3.939573e-04	ci right 4.645111e-04	k: 578	n:1350000
Cons ci ratio: 8.794601e-04	ci left: 9.359603e-01	ci right 9.367845e-01	k: 1264104	n:1350000
KS ci ratio: 1.628746e-01	ci left: 3.939573e-04	ci right 4.645111e-04	k: 578	n:1350000
ATXN1   1350000 perm   1075 sec   (1256 perm/sec)   p_kst 4.281481e-04   p_cons 9.363733e-01   p_joint 4.281481e-04

Joint ci ratio: 1.621759e-01	ci left: 3.945875e-04	ci right 4.649214e-04	k: 583	n:1360000
Cons ci ratio: 8.761490e-04	ci left: 9.359716e-01	ci right 9.367927e-01	k: 1273481	n:1360000
KS ci ratio: 1.621759e-01	ci left: 3.945875e-04	ci right 4.649214e-04	k: 583	n:1360000
ATXN1   1360000 perm   1089 sec   (1249 perm/sec)   p_kst 4.286765e-04   p_cons 9.363831e-01   p_joint 4.286765e-04

Joint ci ratio: 1.608046e-01	ci left: 3.987117e-04	ci right 4.691217e-04	k: 593	n:1370000
Cons ci ratio: 8.727467e-04	ci left: 9.360003e-01	ci right 9.368183e-01	k: 1282882	n:1370000
KS ci ratio: 1.608046e-01	ci left: 3.987117e-04	ci right 4.691217e-04	k: 593	n:1370000
ATXN1   1370000 perm   1103 sec   (1242 perm/sec)   p_kst 4.328467e-04   p_cons 9.364102e-01   p_joint 4.328467e-04

Joint ci ratio: 1.599985e-01	ci left: 3.999958e-04	ci right 4.702445e-04	k: 599	n:1380000
Cons ci ratio: 8.693677e-04	ci left: 9.360308e-01	ci right 9.368456e-01	k: 1292286	n:1380000
KS ci ratio: 1.599985e-01	ci left: 3.999958e-04	ci right 4.702445e-04	k: 599	n:1380000
ATXN1   1380000 perm   1117 sec   (1236 perm/sec)   p_kst 4.340580e-04   p_cons 9.364391e-01   p_joint 4.340580e-04

Joint ci ratio: 1.596001e-01	ci left: 3.991901e-04	ci right 4.691060e-04	k: 602	n:1390000
Cons ci ratio: 8.660222e-04	ci left: 9.360616e-01	ci right 9.368733e-01	k: 1301691	n:1390000
KS ci ratio: 1.596001e-01	ci left: 3.991901e-04	ci right 4.691060e-04	k: 602	n:1390000
ATXN1   1390000 perm   1131 sec   (1229 perm/sec)   p_kst 4.330935e-04   p_cons 9.364683e-01   p_joint 4.330935e-04

Joint ci ratio: 1.588118e-01	ci left: 4.004537e-04	ci right 4.702115e-04	k: 608	n:1400000
Cons ci ratio: 8.630464e-04	ci left: 9.360461e-01	ci right 9.368550e-01	k: 1311032	n:1400000
KS ci ratio: 1.588118e-01	ci left: 4.004537e-04	ci right 4.702115e-04	k: 608	n:1400000
ATXN1   1400000 perm   1145 sec   (1222 perm/sec)   p_kst 4.342857e-04   p_cons 9.364514e-01   p_joint 4.342857e-04

Joint ci ratio: 1.586818e-01	ci left: 3.982946e-04	ci right 4.676141e-04	k: 609	n:1410000
Cons ci ratio: 8.598293e-04	ci left: 9.360685e-01	ci right 9.368744e-01	k: 1320426	n:1410000
KS ci ratio: 1.586818e-01	ci left: 3.982946e-04	ci right 4.676141e-04	k: 609	n:1410000
ATXN1   1410000 perm   1160 sec   (1216 perm/sec)   p_kst 4.319149e-04   p_cons 9.364723e-01   p_joint 4.319149e-04

Joint ci ratio: 1.577789e-01	ci left: 4.002241e-04	ci right 4.694456e-04	k: 616	n:1420000
Cons ci ratio: 8.569573e-04	ci left: 9.360475e-01	ci right 9.368507e-01	k: 1329759	n:1420000
KS ci ratio: 1.577789e-01	ci left: 4.002241e-04	ci right 4.694456e-04	k: 616	n:1420000
ATXN1   1420000 perm   1174 sec   (1210 perm/sec)   p_kst 4.338028e-04   p_cons 9.364500e-01   p_joint 4.338028e-04

Joint ci ratio: 1.570172e-01	ci left: 4.014559e-04	ci right 4.705237e-04	k: 622	n:1430000
Cons ci ratio: 8.540585e-04	ci left: 9.360346e-01	ci right 9.368350e-01	k: 1339103	n:1430000
KS ci ratio: 1.570172e-01	ci left: 4.014559e-04	ci right 4.705237e-04	k: 622	n:1430000
ATXN1   1430000 perm   1189 sec   (1203 perm/sec)   p_kst 4.349650e-04   p_cons 9.364357e-01   p_joint 4.349650e-04

Joint ci ratio: 1.562664e-01	ci left: 4.026714e-04	ci right 4.715860e-04	k: 628	n:1440000
Cons ci ratio: 8.511342e-04	ci left: 9.360294e-01	ci right 9.368271e-01	k: 1348458	n:1440000
KS ci ratio: 1.562664e-01	ci left: 4.026714e-04	ci right 4.715860e-04	k: 628	n:1440000
ATXN1   1440000 perm   1203 sec   (1197 perm/sec)   p_kst 4.361111e-04   p_cons 9.364292e-01   p_joint 4.361111e-04

Joint ci ratio: 1.558952e-01	ci left: 4.018825e-04	ci right 4.704834e-04	k: 631	n:1450000
Cons ci ratio: 8.482595e-04	ci left: 9.360216e-01	ci right 9.368166e-01	k: 1357809	n:1450000
KS ci ratio: 1.558952e-01	ci left: 4.018825e-04	ci right 4.704834e-04	k: 631	n:1450000
ATXN1   1450000 perm   1218 sec   (1191 perm/sec)   p_kst 4.351724e-04   p_cons 9.364200e-01   p_joint 4.351724e-04

Joint ci ratio: 1.556492e-01	ci left: 4.004463e-04	ci right 4.686841e-04	k: 633	n:1460000
Cons ci ratio: 8.452678e-04	ci left: 9.360345e-01	ci right 9.368267e-01	k: 1367190	n:1460000
KS ci ratio: 1.556492e-01	ci left: 4.004463e-04	ci right 4.686841e-04	k: 633	n:1460000
ATXN1   1460000 perm   1233 sec   (1184 perm/sec)   p_kst 4.335616e-04   p_cons 9.364315e-01   p_joint 4.335616e-04

Joint ci ratio: 1.546762e-01	ci left: 4.029531e-04	ci right 4.711491e-04	k: 641	n:1470000
Cons ci ratio: 8.422786e-04	ci left: 9.360514e-01	ci right 9.368408e-01	k: 1376577	n:1470000
KS ci ratio: 1.546762e-01	ci left: 4.029531e-04	ci right 4.711491e-04	k: 641	n:1470000
ATXN1   1470000 perm   1248 sec   (1178 perm/sec)   p_kst 4.360544e-04   p_cons 9.364469e-01   p_joint 4.360544e-04

Joint ci ratio: 1.544360e-01	ci left: 4.015296e-04	ci right 4.693692e-04	k: 643	n:1480000
Cons ci ratio: 8.393685e-04	ci left: 9.360612e-01	ci right 9.368479e-01	k: 1385954	n:1480000
KS ci ratio: 1.544360e-01	ci left: 4.015296e-04	ci right 4.693692e-04	k: 643	n:1480000
ATXN1   1480000 perm   1263 sec   (1172 perm/sec)   p_kst 4.344595e-04   p_cons 9.364554e-01   p_joint 4.344595e-04

Joint ci ratio: 1.534854e-01	ci left: 4.039970e-04	ci right 4.717949e-04	k: 651	n:1490000
Cons ci ratio: 8.363185e-04	ci left: 9.360951e-01	ci right 9.368790e-01	k: 1395367	n:1490000
KS ci ratio: 1.534854e-01	ci left: 4.039970e-04	ci right 4.717949e-04	k: 651	n:1490000
ATXN1   1490000 perm   1278 sec   (1166 perm/sec)   p_kst 4.369128e-04   p_cons 9.364879e-01   p_joint 4.369128e-04

Joint ci ratio: 1.527839e-01	ci left: 4.051505e-04	ci right 4.728027e-04	k: 657	n:1500000
Cons ci ratio: 8.335629e-04	ci left: 9.360912e-01	ci right 9.368725e-01	k: 1404724	n:1500000
KS ci ratio: 1.527839e-01	ci left: 4.051505e-04	ci right 4.728027e-04	k: 657	n:1500000
ATXN1   1500000 perm   1293 sec   (1160 perm/sec)   p_kst 4.380000e-04   p_cons 9.364827e-01   p_joint 4.380000e-04

Joint ci ratio: 1.525524e-01	ci left: 4.037412e-04	ci right 4.710466e-04	k: 659	n:1510000
Cons ci ratio: 8.309962e-04	ci left: 9.360640e-01	ci right 9.368429e-01	k: 1414046	n:1510000
KS ci ratio: 1.525524e-01	ci left: 4.037412e-04	ci right 4.710466e-04	k: 659	n:1510000
ATXN1   1510000 perm   1308 sec   (1154 perm/sec)   p_kst 4.364238e-04   p_cons 9.364543e-01   p_joint 4.364238e-04

Joint ci ratio: 1.520922e-01	ci left: 4.036163e-04	ci right 4.706795e-04	k: 663	n:1520000
Cons ci ratio: 8.281416e-04	ci left: 9.360821e-01	ci right 9.368583e-01	k: 1423436	n:1520000
KS ci ratio: 1.520922e-01	ci left: 4.036163e-04	ci right 4.706795e-04	k: 663	n:1520000
ATXN1   1520000 perm   1323 sec   (1149 perm/sec)   p_kst 4.361842e-04   p_cons 9.364711e-01   p_joint 4.361842e-04

Joint ci ratio: 1.518638e-01	ci left: 4.022358e-04	ci right 4.689600e-04	k: 665	n:1530000
Cons ci ratio: 8.254884e-04	ci left: 9.360751e-01	ci right 9.368488e-01	k: 1432788	n:1530000
KS ci ratio: 1.518638e-01	ci left: 4.022358e-04	ci right 4.689600e-04	k: 665	n:1530000
ATXN1   1530000 perm   1339 sec   (1143 perm/sec)   p_kst 4.346405e-04   p_cons 9.364627e-01   p_joint 4.346405e-04

Joint ci ratio: 1.512969e-01	ci left: 4.027475e-04	ci right 4.692846e-04	k: 670	n:1540000
Cons ci ratio: 8.227304e-04	ci left: 9.360870e-01	ci right 9.368581e-01	k: 1442169	n:1540000
KS ci ratio: 1.512969e-01	ci left: 4.027475e-04	ci right 4.692846e-04	k: 670	n:1540000
ATXN1   1540000 perm   1354 sec   (1137 perm/sec)   p_kst 4.350649e-04   p_cons 9.364734e-01   p_joint 4.350649e-04

Joint ci ratio: 1.510720e-01	ci left: 4.013906e-04	ci right 4.675961e-04	k: 672	n:1550000
Cons ci ratio: 8.199820e-04	ci left: 9.361014e-01	ci right 9.368699e-01	k: 1451554	n:1550000
KS ci ratio: 1.510720e-01	ci left: 4.013906e-04	ci right 4.675961e-04	k: 672	n:1550000
ATXN1   1550000 perm   1370 sec   (1131 perm/sec)   p_kst 4.335484e-04   p_cons 9.364865e-01   p_joint 4.335484e-04

Joint ci ratio: 1.508482e-01	ci left: 4.000512e-04	ci right 4.659292e-04	k: 674	n:1560000
Cons ci ratio: 8.175559e-04	ci left: 9.360725e-01	ci right 9.368387e-01	k: 1460872	n:1560000
KS ci ratio: 1.508482e-01	ci left: 4.000512e-04	ci right 4.659292e-04	k: 674	n:1560000
ATXN1   1560000 perm   1386 sec   (1126 perm/sec)   p_kst 4.320513e-04   p_cons 9.364564e-01   p_joint 4.320513e-04

Joint ci ratio: 1.504032e-01	ci left: 3.999548e-04	ci right 4.656052e-04	k: 678	n:1570000
Cons ci ratio: 8.150945e-04	ci left: 9.360523e-01	ci right 9.368162e-01	k: 1470203	n:1570000
KS ci ratio: 1.504032e-01	ci left: 3.999548e-04	ci right 4.656052e-04	k: 678	n:1570000
ATXN1   1570000 perm   1402 sec   (1120 perm/sec)   p_kst 4.318471e-04   p_cons 9.364350e-01   p_joint 4.318471e-04

Joint ci ratio: 1.501823e-01	ci left: 3.986417e-04	ci right 4.639717e-04	k: 680	n:1580000
Cons ci ratio: 8.125513e-04	ci left: 9.360476e-01	ci right 9.368091e-01	k: 1479558	n:1580000
KS ci ratio: 1.501823e-01	ci left: 3.986417e-04	ci right 4.639717e-04	k: 680	n:1580000
ATXN1   1580000 perm   1418 sec   (1115 perm/sec)   p_kst 4.303797e-04   p_cons 9.364291e-01   p_joint 4.303797e-04

Joint ci ratio: 1.497432e-01	ci left: 3.985558e-04	ci right 4.636637e-04	k: 684	n:1590000
Cons ci ratio: 8.101901e-04	ci left: 9.360196e-01	ci right 9.367788e-01	k: 1488876	n:1590000
KS ci ratio: 1.497432e-01	ci left: 3.985558e-04	ci right 4.636637e-04	k: 684	n:1590000
ATXN1   1590000 perm   1434 sec   (1109 perm/sec)   p_kst 4.301887e-04   p_cons 9.364000e-01   p_joint 4.301887e-04

Joint ci ratio: 1.494164e-01	ci left: 3.978697e-04	ci right 4.627110e-04	k: 687	n:1600000
Cons ci ratio: 8.075653e-04	ci left: 9.360339e-01	ci right 9.367907e-01	k: 1498261	n:1600000
KS ci ratio: 1.494164e-01	ci left: 3.978697e-04	ci right 4.627110e-04	k: 687	n:1600000
ATXN1   1600000 perm   1450 sec   (1104 perm/sec)   p_kst 4.293750e-04   p_cons 9.364131e-01   p_joint 4.293750e-04

Joint ci ratio: 1.489840e-01	ci left: 3.977901e-04	ci right 4.624141e-04	k: 691	n:1610000
Cons ci ratio: 8.051085e-04	ci left: 9.360269e-01	ci right 9.367814e-01	k: 1507612	n:1610000
KS ci ratio: 1.489840e-01	ci left: 3.977901e-04	ci right 4.624141e-04	k: 691	n:1610000
ATXN1   1610000 perm   1466 sec   (1098 perm/sec)   p_kst 4.291925e-04   p_cons 9.364050e-01   p_joint 4.291925e-04

Joint ci ratio: 1.485552e-01	ci left: 3.977119e-04	ci right 4.621207e-04	k: 695	n:1620000
Cons ci ratio: 8.026158e-04	ci left: 9.360287e-01	ci right 9.367809e-01	k: 1516977	n:1620000
KS ci ratio: 1.485552e-01	ci left: 3.977119e-04	ci right 4.621207e-04	k: 695	n:1620000
ATXN1   1620000 perm   1482 sec   (1093 perm/sec)   p_kst 4.290123e-04   p_cons 9.364056e-01   p_joint 4.290123e-04

Joint ci ratio: 1.481302e-01	ci left: 3.976348e-04	ci right 4.618306e-04	k: 699	n:1630000
Cons ci ratio: 8.001544e-04	ci left: 9.360292e-01	ci right 9.367791e-01	k: 1526340	n:1630000
KS ci ratio: 1.481302e-01	ci left: 3.976348e-04	ci right 4.618306e-04	k: 699	n:1630000
ATXN1   1630000 perm   1498 sec   (1088 perm/sec)   p_kst 4.288344e-04   p_cons 9.364049e-01   p_joint 4.288344e-04

Joint ci ratio: 1.478139e-01	ci left: 3.969717e-04	ci right 4.609115e-04	k: 702	n:1640000
Cons ci ratio: 7.978379e-04	ci left: 9.360114e-01	ci right 9.367590e-01	k: 1535673	n:1640000
KS ci ratio: 1.478139e-01	ci left: 3.969717e-04	ci right 4.609115e-04	k: 702	n:1640000
ATXN1   1640000 perm   1515 sec   (1083 perm/sec)   p_kst 4.280488e-04   p_cons 9.363860e-01   p_joint 4.280488e-04

Joint ci ratio: 1.474995e-01	ci left: 3.963169e-04	ci right 4.600035e-04	k: 705	n:1650000
Cons ci ratio: 7.954605e-04	ci left: 9.360059e-01	ci right 9.367513e-01	k: 1545026	n:1650000
KS ci ratio: 1.474995e-01	ci left: 3.963169e-04	ci right 4.600035e-04	k: 705	n:1650000
ATXN1   1650000 perm   1532 sec   (1077 perm/sec)   p_kst 4.272727e-04   p_cons 9.363794e-01   p_joint 4.272727e-04

Joint ci ratio: 1.472912e-01	ci left: 3.950898e-04	ci right 4.584816e-04	k: 707	n:1660000
Cons ci ratio: 7.929999e-04	ci left: 9.360162e-01	ci right 9.367594e-01	k: 1554405	n:1660000
KS ci ratio: 1.472912e-01	ci left: 3.950898e-04	ci right 4.584816e-04	k: 707	n:1660000
ATXN1   1660000 perm   1548 sec   (1072 perm/sec)   p_kst 4.259036e-04   p_cons 9.363886e-01   p_joint 4.259036e-04

Joint ci ratio: 1.466709e-01	ci left: 3.961847e-04	ci right 4.594610e-04	k: 713	n:1670000
Cons ci ratio: 7.907210e-04	ci left: 9.360024e-01	ci right 9.367434e-01	k: 1563744	n:1670000
KS ci ratio: 1.466709e-01	ci left: 3.961847e-04	ci right 4.594610e-04	k: 713	n:1670000
ATXN1   1670000 perm   1565 sec   (1067 perm/sec)   p_kst 4.269461e-04   p_cons 9.363737e-01   p_joint 4.269461e-04

Joint ci ratio: 1.465684e-01	ci left: 3.943998e-04	ci right 4.573432e-04	k: 714	n:1680000
Cons ci ratio: 7.882646e-04	ci left: 9.360186e-01	ci right 9.367573e-01	k: 1573133	n:1680000
KS ci ratio: 1.465684e-01	ci left: 3.943998e-04	ci right 4.573432e-04	k: 714	n:1680000
ATXN1   1680000 perm   1582 sec   (1062 perm/sec)   p_kst 4.250000e-04   p_cons 9.363887e-01   p_joint 4.250000e-04

Joint ci ratio: 1.462620e-01	ci left: 3.937762e-04	ci right 4.564772e-04	k: 717	n:1690000
Cons ci ratio: 7.858387e-04	ci left: 9.360334e-01	ci right 9.367698e-01	k: 1582520	n:1690000
KS ci ratio: 1.462620e-01	ci left: 3.937762e-04	ci right 4.564772e-04	k: 717	n:1690000
ATXN1   1690000 perm   1599 sec   (1057 perm/sec)   p_kst 4.242604e-04   p_cons 9.364024e-01   p_joint 4.242604e-04

Joint ci ratio: 1.458563e-01	ci left: 3.937268e-04	ci right 4.562309e-04	k: 721	n:1700000
Cons ci ratio: 7.836054e-04	ci left: 9.360221e-01	ci right 9.367564e-01	k: 1591863	n:1700000
KS ci ratio: 1.458563e-01	ci left: 3.937268e-04	ci right 4.562309e-04	k: 721	n:1700000
ATXN1   1700000 perm   1616 sec   (1052 perm/sec)   p_kst 4.241176e-04   p_cons 9.363900e-01   p_joint 4.241176e-04

Joint ci ratio: 1.455542e-01	ci left: 3.931147e-04	ci right 4.553812e-04	k: 724	n:1710000
Cons ci ratio: 7.811723e-04	ci left: 9.360443e-01	ci right 9.367764e-01	k: 1601263	n:1710000
KS ci ratio: 1.455542e-01	ci left: 3.931147e-04	ci right 4.553812e-04	k: 724	n:1710000
ATXN1   1710000 perm   1633 sec   (1047 perm/sec)   p_kst 4.233918e-04   p_cons 9.364111e-01   p_joint 4.233918e-04

Joint ci ratio: 1.452541e-01	ci left: 3.925099e-04	ci right 4.545412e-04	k: 727	n:1720000
Cons ci ratio: 7.788377e-04	ci left: 9.360547e-01	ci right 9.367846e-01	k: 1610643	n:1720000
KS ci ratio: 1.452541e-01	ci left: 3.925099e-04	ci right 4.545412e-04	k: 727	n:1720000
ATXN1   1720000 perm   1650 sec   (1042 perm/sec)   p_kst 4.226744e-04   p_cons 9.364203e-01   p_joint 4.226744e-04

Joint ci ratio: 1.445606e-01	ci left: 3.941406e-04	ci right 4.561067e-04	k: 734	n:1730000
Cons ci ratio: 7.764598e-04	ci left: 9.360747e-01	ci right 9.368024e-01	k: 1620040	n:1730000
KS ci ratio: 1.445606e-01	ci left: 3.941406e-04	ci right 4.561067e-04	k: 734	n:1730000
ATXN1   1730000 perm   1667 sec   (1038 perm/sec)   p_kst 4.242775e-04   p_cons 9.364393e-01   p_joint 4.242775e-04

Joint ci ratio: 1.440714e-01	ci left: 3.946453e-04	ci right 4.564626e-04	k: 739	n:1740000
Cons ci ratio: 7.741184e-04	ci left: 9.360923e-01	ci right 9.368178e-01	k: 1629433	n:1740000
KS ci ratio: 1.440714e-01	ci left: 3.946453e-04	ci right 4.564626e-04	k: 739	n:1740000
ATXN1   1740000 perm   1685 sec   (1033 perm/sec)   p_kst 4.247126e-04   p_cons 9.364557e-01   p_joint 4.247126e-04

Joint ci ratio: 1.438772e-01	ci left: 3.934918e-04	ci right 4.550383e-04	k: 741	n:1750000
Cons ci ratio: 7.720130e-04	ci left: 9.360764e-01	ci right 9.367999e-01	k: 1638768	n:1750000
KS ci ratio: 1.438772e-01	ci left: 3.934918e-04	ci right 4.550383e-04	k: 741	n:1750000
ATXN1   1750000 perm   1702 sec   (1028 perm/sec)   p_kst 4.234286e-04   p_cons 9.364389e-01   p_joint 4.234286e-04

Joint ci ratio: 1.435872e-01	ci left: 3.928993e-04	ci right 4.542186e-04	k: 744	n:1760000
Cons ci ratio: 7.697262e-04	ci left: 9.360914e-01	ci right 9.368128e-01	k: 1648157	n:1760000
KS ci ratio: 1.435872e-01	ci left: 3.928993e-04	ci right 4.542186e-04	k: 744	n:1760000
ATXN1   1760000 perm   1720 sec   (1024 perm/sec)   p_kst 4.227273e-04   p_cons 9.364528e-01   p_joint 4.227273e-04

Joint ci ratio: 1.433950e-01	ci left: 3.917689e-04	ci right 4.528229e-04	k: 746	n:1770000
Cons ci ratio: 7.676053e-04	ci left: 9.360837e-01	ci right 9.368030e-01	k: 1657506	n:1770000
KS ci ratio: 1.433950e-01	ci left: 3.917689e-04	ci right 4.528229e-04	k: 746	n:1770000
ATXN1   1770000 perm   1737 sec   (1019 perm/sec)   p_kst 4.214689e-04   p_cons 9.364441e-01   p_joint 4.214689e-04

Joint ci ratio: 1.431080e-01	ci left: 3.911929e-04	ci right 4.520247e-04	k: 749	n:1780000
Cons ci ratio: 7.652851e-04	ci left: 9.361098e-01	ci right 9.368270e-01	k: 1666915	n:1780000
KS ci ratio: 1.431080e-01	ci left: 3.911929e-04	ci right 4.520247e-04	k: 749	n:1780000
ATXN1   1780000 perm   1755 sec   (1014 perm/sec)   p_kst 4.207865e-04   p_cons 9.364691e-01   p_joint 4.207865e-04

Joint ci ratio: 1.428227e-01	ci left: 3.906235e-04	ci right 4.512354e-04	k: 752	n:1790000
Cons ci ratio: 7.631505e-04	ci left: 9.361098e-01	ci right 9.368251e-01	k: 1676278	n:1790000
KS ci ratio: 1.428227e-01	ci left: 3.906235e-04	ci right 4.512354e-04	k: 752	n:1790000
ATXN1   1790000 perm   1773 sec   (1010 perm/sec)   p_kst 4.201117e-04   p_cons 9.364682e-01   p_joint 4.201117e-04

Joint ci ratio: 1.421633e-01	ci left: 3.922037e-04	ci right 4.527559e-04	k: 759	n:1800000
Cons ci ratio: 7.612468e-04	ci left: 9.360765e-01	ci right 9.367899e-01	k: 1685581	n:1800000
KS ci ratio: 1.421633e-01	ci left: 3.922037e-04	ci right 4.527559e-04	k: 759	n:1800000
ATXN1   1800000 perm   1791 sec   (1005 perm/sec)   p_kst 4.216667e-04   p_cons 9.364339e-01   p_joint 4.216667e-04

Joint ci ratio: 1.421634e-01	ci left: 3.900368e-04	ci right 4.502545e-04	k: 759	n:1810000
Cons ci ratio: 7.591527e-04	ci left: 9.360756e-01	ci right 9.367871e-01	k: 1694942	n:1810000
KS ci ratio: 1.421634e-01	ci left: 3.900368e-04	ci right 4.502545e-04	k: 759	n:1810000
ATXN1   1810000 perm   1809 sec   (1001 perm/sec)   p_kst 4.193370e-04   p_cons 9.364320e-01   p_joint 4.193370e-04

Joint ci ratio: 1.414209e-01	ci left: 3.921334e-04	ci right 4.523320e-04	k: 767	n:1820000
Cons ci ratio: 7.570409e-04	ci left: 9.360803e-01	ci right 9.367897e-01	k: 1704313	n:1820000
KS ci ratio: 1.414209e-01	ci left: 3.921334e-04	ci right 4.523320e-04	k: 767	n:1820000
ATXN1   1820000 perm   1827 sec   (996 perm/sec)   p_kst 4.214286e-04   p_cons 9.364357e-01   p_joint 4.214286e-04

Joint ci ratio: 1.411456e-01	ci left: 3.915720e-04	ci right 4.515575e-04	k: 770	n:1830000
Cons ci ratio: 7.550679e-04	ci left: 9.360657e-01	ci right 9.367733e-01	k: 1713649	n:1830000
KS ci ratio: 1.411456e-01	ci left: 3.915720e-04	ci right 4.515575e-04	k: 770	n:1830000
ATXN1   1830000 perm   1845 sec   (992 perm/sec)   p_kst 4.207650e-04   p_cons 9.364202e-01   p_joint 4.207650e-04

Joint ci ratio: 1.410542e-01	ci left: 3.899681e-04	ci right 4.496661e-04	k: 771	n:1840000
Cons ci ratio: 7.529625e-04	ci left: 9.360748e-01	ci right 9.367804e-01	k: 1723028	n:1840000
KS ci ratio: 1.410542e-01	ci left: 3.899681e-04	ci right 4.496661e-04	k: 771	n:1840000
ATXN1   1840000 perm   1863 sec   (988 perm/sec)   p_kst 4.190217e-04   p_cons 9.364283e-01   p_joint 4.190217e-04

Joint ci ratio: 1.406902e-01	ci left: 3.899462e-04	ci right 4.494738e-04	k: 775	n:1850000
Cons ci ratio: 7.509563e-04	ci left: 9.360707e-01	ci right 9.367744e-01	k: 1732383	n:1850000
KS ci ratio: 1.406902e-01	ci left: 3.899462e-04	ci right 4.494738e-04	k: 775	n:1850000
ATXN1   1850000 perm   1881 sec   (983 perm/sec)   p_kst 4.189189e-04   p_cons 9.364232e-01   p_joint 4.189189e-04

Joint ci ratio: 1.404191e-01	ci left: 3.894059e-04	ci right 4.487268e-04	k: 778	n:1860000
Cons ci ratio: 7.488782e-04	ci left: 9.360807e-01	ci right 9.367825e-01	k: 1741764	n:1860000
KS ci ratio: 1.404191e-01	ci left: 3.894059e-04	ci right 4.487268e-04	k: 778	n:1860000
ATXN1   1860000 perm   1900 sec   (979 perm/sec)   p_kst 4.182796e-04   p_cons 9.364323e-01   p_joint 4.182796e-04

Joint ci ratio: 1.403292e-01	ci left: 3.878394e-04	ci right 4.468808e-04	k: 779	n:1870000
Cons ci ratio: 7.468239e-04	ci left: 9.360895e-01	ci right 9.367894e-01	k: 1751143	n:1870000
KS ci ratio: 1.403292e-01	ci left: 3.878394e-04	ci right 4.468808e-04	k: 779	n:1870000
ATXN1   1870000 perm   1918 sec   (975 perm/sec)   p_kst 4.165775e-04   p_cons 9.364401e-01   p_joint 4.165775e-04

Joint ci ratio: 1.397925e-01	ci left: 3.888561e-04	ci right 4.478070e-04	k: 785	n:1880000
Cons ci ratio: 7.447165e-04	ci left: 9.361094e-01	ci right 9.368073e-01	k: 1760543	n:1880000
KS ci ratio: 1.397925e-01	ci left: 3.888561e-04	ci right 4.478070e-04	k: 785	n:1880000
ATXN1   1880000 perm   1937 sec   (971 perm/sec)   p_kst 4.175532e-04   p_cons 9.364590e-01   p_joint 4.175532e-04

Joint ci ratio: 1.393499e-01	ci left: 3.893518e-04	ci right 4.481755e-04	k: 790	n:1890000
Cons ci ratio: 7.427853e-04	ci left: 9.361037e-01	ci right 9.367998e-01	k: 1769895	n:1890000
KS ci ratio: 1.393499e-01	ci left: 3.893518e-04	ci right 4.481755e-04	k: 790	n:1890000
ATXN1   1890000 perm   1955 sec   (967 perm/sec)   p_kst 4.179894e-04   p_cons 9.364524e-01   p_joint 4.179894e-04

Joint ci ratio: 1.390865e-01	ci left: 3.888265e-04	ci right 4.474506e-04	k: 793	n:1900000
Cons ci ratio: 7.409051e-04	ci left: 9.360922e-01	ci right 9.367865e-01	k: 1779236	n:1900000
KS ci ratio: 1.390865e-01	ci left: 3.888265e-04	ci right 4.474506e-04	k: 793	n:1900000
ATXN1   1900000 perm   1974 sec   (962 perm/sec)   p_kst 4.173684e-04   p_cons 9.364400e-01   p_joint 4.173684e-04

Joint ci ratio: 1.386506e-01	ci left: 3.893177e-04	ci right 4.478166e-04	k: 798	n:1910000
Cons ci ratio: 7.389968e-04	ci left: 9.360876e-01	ci right 9.367802e-01	k: 1788590	n:1910000
KS ci ratio: 1.386506e-01	ci left: 3.893177e-04	ci right 4.478166e-04	k: 798	n:1910000
ATXN1   1910000 perm   1993 sec   (958 perm/sec)   p_kst 4.178010e-04   p_cons 9.364346e-01   p_joint 4.178010e-04

Joint ci ratio: 1.383911e-01	ci left: 3.887983e-04	ci right 4.471008e-04	k: 801	n:1920000
Cons ci ratio: 7.371483e-04	ci left: 9.360758e-01	ci right 9.367666e-01	k: 1797930	n:1920000
KS ci ratio: 1.383911e-01	ci left: 3.887983e-04	ci right 4.471008e-04	k: 801	n:1920000
ATXN1   1920000 perm   2012 sec   (954 perm/sec)   p_kst 4.171875e-04   p_cons 9.364219e-01   p_joint 4.171875e-04

Joint ci ratio: 1.379616e-01	ci left: 3.892849e-04	ci right 4.474644e-04	k: 806	n:1930000
Cons ci ratio: 7.352496e-04	ci left: 9.360745e-01	ci right 9.367635e-01	k: 1807290	n:1930000
KS ci ratio: 1.379616e-01	ci left: 3.892849e-04	ci right 4.474644e-04	k: 806	n:1930000
ATXN1   1930000 perm   2031 sec   (950 perm/sec)   p_kst 4.176166e-04   p_cons 9.364197e-01   p_joint 4.176166e-04

Joint ci ratio: 1.373671e-01	ci left: 3.907623e-04	ci right 4.488903e-04	k: 813	n:1940000
Cons ci ratio: 7.332924e-04	ci left: 9.360851e-01	ci right 9.367723e-01	k: 1816673	n:1940000
KS ci ratio: 1.373671e-01	ci left: 3.907623e-04	ci right 4.488903e-04	k: 813	n:1940000
ATXN1   1940000 perm   2050 sec   (946 perm/sec)   p_kst 4.190722e-04   p_cons 9.364294e-01   p_joint 4.190722e-04

Joint ci ratio: 1.368635e-01	ci left: 3.917298e-04	ci right 4.497707e-04	k: 819	n:1950000
Cons ci ratio: 7.314265e-04	ci left: 9.360833e-01	ci right 9.367687e-01	k: 1826032	n:1950000
KS ci ratio: 1.368635e-01	ci left: 3.917298e-04	ci right 4.497707e-04	k: 819	n:1950000
ATXN1   1950000 perm   2069 sec   (942 perm/sec)   p_kst 4.200000e-04   p_cons 9.364267e-01   p_joint 4.200000e-04

Joint ci ratio: 1.364481e-01	ci left: 3.921950e-04	ci right 4.501141e-04	k: 824	n:1960000
Cons ci ratio: 7.295809e-04	ci left: 9.360805e-01	ci right 9.367642e-01	k: 1835389	n:1960000
KS ci ratio: 1.364481e-01	ci left: 3.921950e-04	ci right 4.501141e-04	k: 824	n:1960000
ATXN1   1960000 perm   2089 sec   (938 perm/sec)   p_kst 4.204082e-04   p_cons 9.364230e-01   p_joint 4.204082e-04

Joint ci ratio: 1.357097e-01	ci left: 3.946172e-04	ci right 4.525532e-04	k: 833	n:1970000
Cons ci ratio: 7.277089e-04	ci left: 9.360843e-01	ci right 9.367662e-01	k: 1844759	n:1970000
KS ci ratio: 1.357097e-01	ci left: 3.946172e-04	ci right 4.525532e-04	k: 833	n:1970000
ATXN1   1970000 perm   2108 sec   (934 perm/sec)   p_kst 4.228426e-04   p_cons 9.364259e-01   p_joint 4.228426e-04

Joint ci ratio: 1.356286e-01	ci left: 3.931120e-04	ci right 4.507898e-04	k: 834	n:1980000
Cons ci ratio: 7.257866e-04	ci left: 9.360987e-01	ci right 9.367788e-01	k: 1854150	n:1980000
KS ci ratio: 1.356286e-01	ci left: 3.931120e-04	ci right 4.507898e-04	k: 834	n:1980000
ATXN1   1980000 perm   2128 sec   (931 perm/sec)   p_kst 4.212121e-04   p_cons 9.364394e-01   p_joint 4.212121e-04

Joint ci ratio: 1.352243e-01	ci left: 3.935641e-04	ci right 4.511221e-04	k: 839	n:1990000
Cons ci ratio: 7.238610e-04	ci left: 9.361160e-01	ci right 9.367943e-01	k: 1863547	n:1990000
KS ci ratio: 1.352243e-01	ci left: 3.935641e-04	ci right 4.511221e-04	k: 839	n:1990000
ATXN1   1990000 perm   2147 sec   (927 perm/sec)   p_kst 4.216080e-04   p_cons 9.364558e-01   p_joint 4.216080e-04

Joint ci ratio: 1.348236e-01	ci left: 3.940118e-04	ci right 4.514509e-04	k: 844	n:2000000
Cons ci ratio: 7.221206e-04	ci left: 9.361050e-01	ci right 9.367817e-01	k: 1872888	n:2000000
KS ci ratio: 1.348236e-01	ci left: 3.940118e-04	ci right 4.514509e-04	k: 844	n:2000000
ATXN1   2000000 perm   2167 sec   (923 perm/sec)   p_kst 4.220000e-04   p_cons 9.364440e-01   p_joint 4.220000e-04

Joint ci ratio: 1.345056e-01	ci left: 3.939745e-04	ci right 4.512619e-04	k: 848	n:2010000
Cons ci ratio: 7.204437e-04	ci left: 9.360857e-01	ci right 9.367608e-01	k: 1882212	n:2010000
KS ci ratio: 1.345056e-01	ci left: 3.939745e-04	ci right 4.512619e-04	k: 848	n:2010000
ATXN1   2010000 perm   2187 sec   (919 perm/sec)   p_kst 4.218905e-04   p_cons 9.364239e-01   p_joint 4.218905e-04

Joint ci ratio: 1.339544e-01	ci left: 3.953732e-04	ci right 4.526096e-04	k: 855	n:2020000
Cons ci ratio: 7.186111e-04	ci left: 9.360944e-01	ci right 9.367678e-01	k: 1891592	n:2020000
KS ci ratio: 1.339544e-01	ci left: 3.953732e-04	ci right 4.526096e-04	k: 855	n:2020000
ATXN1   2020000 perm   2206 sec   (916 perm/sec)   p_kst 4.232673e-04   p_cons 9.364317e-01   p_joint 4.232673e-04

Joint ci ratio: 1.334873e-01	ci left: 3.962823e-04	ci right 4.534345e-04	k: 861	n:2030000
Cons ci ratio: 7.168933e-04	ci left: 9.360861e-01	ci right 9.367579e-01	k: 1900938	n:2030000
KS ci ratio: 1.334873e-01	ci left: 3.962823e-04	ci right 4.534345e-04	k: 861	n:2030000
ATXN1   2030000 perm   2226 sec   (912 perm/sec)   p_kst 4.241379e-04   p_cons 9.364227e-01   p_joint 4.241379e-04

Joint ci ratio: 1.334101e-01	ci left: 3.948136e-04	ci right 4.517183e-04	k: 862	n:2040000
Cons ci ratio: 7.151730e-04	ci left: 9.360805e-01	ci right 9.367506e-01	k: 1910289	n:2040000
KS ci ratio: 1.334101e-01	ci left: 3.948136e-04	ci right 4.517183e-04	k: 862	n:2040000
ATXN1   2040000 perm   2246 sec   (908 perm/sec)   p_kst 4.225490e-04   p_cons 9.364162e-01   p_joint 4.225490e-04

Joint ci ratio: 1.331020e-01	ci left: 3.947738e-04	ci right 4.515310e-04	k: 866	n:2050000
Cons ci ratio: 7.134679e-04	ci left: 9.360744e-01	ci right 9.367429e-01	k: 1919639	n:2050000
KS ci ratio: 1.331020e-01	ci left: 3.947738e-04	ci right 4.515310e-04	k: 866	n:2050000
ATXN1   2050000 perm   2266 sec   (905 perm/sec)   p_kst 4.224390e-04   p_cons 9.364093e-01   p_joint 4.224390e-04

Joint ci ratio: 1.327960e-01	ci left: 3.947346e-04	ci right 4.513454e-04	k: 870	n:2060000
Cons ci ratio: 7.117807e-04	ci left: 9.360674e-01	ci right 9.367343e-01	k: 1928987	n:2060000
KS ci ratio: 1.327960e-01	ci left: 3.947346e-04	ci right 4.513454e-04	k: 870	n:2060000
ATXN1   2060000 perm   2286 sec   (901 perm/sec)   p_kst 4.223301e-04   p_cons 9.364015e-01   p_joint 4.223301e-04

Joint ci ratio: 1.325680e-01	ci left: 3.942288e-04	ci right 4.506624e-04	k: 873	n:2070000
Cons ci ratio: 7.099096e-04	ci left: 9.360933e-01	ci right 9.367586e-01	k: 1938403	n:2070000
KS ci ratio: 1.325680e-01	ci left: 3.942288e-04	ci right 4.506624e-04	k: 873	n:2070000
ATXN1   2070000 perm   2306 sec   (898 perm/sec)   p_kst 4.217391e-04   p_cons 9.364266e-01   p_joint 4.217391e-04

Joint ci ratio: 1.322656e-01	ci left: 3.941929e-04	ci right 4.504825e-04	k: 877	n:2080000
Cons ci ratio: 7.081932e-04	ci left: 9.360955e-01	ci right 9.367591e-01	k: 1947770	n:2080000
KS ci ratio: 1.322656e-01	ci left: 3.941929e-04	ci right 4.504825e-04	k: 877	n:2080000
ATXN1   2080000 perm   2327 sec   (894 perm/sec)   p_kst 4.216346e-04   p_cons 9.364279e-01   p_joint 4.216346e-04

Joint ci ratio: 1.319654e-01	ci left: 3.941574e-04	ci right 4.503042e-04	k: 881	n:2090000
Cons ci ratio: 7.064921e-04	ci left: 9.360971e-01	ci right 9.367591e-01	k: 1957136	n:2090000
KS ci ratio: 1.319654e-01	ci left: 3.941574e-04	ci right 4.503042e-04	k: 881	n:2090000
ATXN1   2090000 perm   2347 sec   (890 perm/sec)   p_kst 4.215311e-04   p_cons 9.364287e-01   p_joint 4.215311e-04

Joint ci ratio: 1.314447e-01	ci left: 3.955040e-04	ci right 4.516029e-04	k: 888	n:2100000
Cons ci ratio: 7.047665e-04	ci left: 9.361049e-01	ci right 9.367653e-01	k: 1966515	n:2100000
KS ci ratio: 1.314447e-01	ci left: 3.955040e-04	ci right 4.516029e-04	k: 888	n:2100000
ATXN1   2100000 perm   2368 sec   (887 perm/sec)   p_kst 4.228571e-04   p_cons 9.364357e-01   p_joint 4.228571e-04

Joint ci ratio: 1.312235e-01	ci left: 3.950047e-04	ci right 4.509311e-04	k: 891	n:2110000
Cons ci ratio: 7.032214e-04	ci left: 9.360841e-01	ci right 9.367431e-01	k: 1975834	n:2110000
KS ci ratio: 1.312235e-01	ci left: 3.950047e-04	ci right 4.509311e-04	k: 891	n:2110000
ATXN1   2110000 perm   2389 sec   (883 perm/sec)   p_kst 4.222749e-04   p_cons 9.364142e-01   p_joint 4.222749e-04

Joint ci ratio: 1.310767e-01	ci left: 3.940539e-04	ci right 4.497784e-04	k: 893	n:2120000
Cons ci ratio: 7.014028e-04	ci left: 9.361118e-01	ci right 9.367691e-01	k: 1985255	n:2120000
KS ci ratio: 1.310767e-01	ci left: 3.940539e-04	ci right 4.497784e-04	k: 893	n:2120000
ATXN1   2120000 perm   2409 sec   (880 perm/sec)   p_kst 4.212264e-04   p_cons 9.364410e-01   p_joint 4.212264e-04

Joint ci ratio: 1.307117e-01	ci left: 3.944744e-04	ci right 4.500910e-04	k: 898	n:2130000
Cons ci ratio: 6.996838e-04	ci left: 9.361246e-01	ci right 9.367803e-01	k: 1994645	n:2130000
KS ci ratio: 1.307117e-01	ci left: 3.944744e-04	ci right 4.500910e-04	k: 898	n:2130000
ATXN1   2130000 perm   2430 sec   (877 perm/sec)   p_kst 4.215962e-04   p_cons 9.364531e-01   p_joint 4.215962e-04

Joint ci ratio: 1.304942e-01	ci left: 3.939871e-04	ci right 4.494355e-04	k: 901	n:2140000
Cons ci ratio: 6.981581e-04	ci left: 9.361064e-01	ci right 9.367606e-01	k: 2003969	n:2140000
KS ci ratio: 1.304942e-01	ci left: 3.939871e-04	ci right 4.494355e-04	k: 901	n:2140000
ATXN1   2140000 perm   2451 sec   (873 perm/sec)   p_kst 4.210280e-04   p_cons 9.364341e-01   p_joint 4.210280e-04

Joint ci ratio: 1.303498e-01	ci left: 3.930545e-04	ci right 4.483057e-04	k: 903	n:2150000
Cons ci ratio: 6.964873e-04	ci left: 9.361149e-01	ci right 9.367676e-01	k: 2013350	n:2150000
KS ci ratio: 1.303498e-01	ci left: 3.930545e-04	ci right 4.483057e-04	k: 903	n:2150000
ATXN1   2150000 perm   2472 sec   (870 perm/sec)   p_kst 4.200000e-04   p_cons 9.364419e-01   p_joint 4.200000e-04

Joint ci ratio: 1.302059e-01	ci left: 3.921305e-04	ci right 4.471863e-04	k: 905	n:2160000
Cons ci ratio: 6.948230e-04	ci left: 9.361243e-01	ci right 9.367754e-01	k: 2022733	n:2160000
KS ci ratio: 1.302059e-01	ci left: 3.921305e-04	ci right 4.471863e-04	k: 905	n:2160000
ATXN1   2160000 perm   2493 sec   (866 perm/sec)   p_kst 4.189815e-04   p_cons 9.364505e-01   p_joint 4.189815e-04

Joint ci ratio: 1.299195e-01	ci left: 3.921068e-04	ci right 4.470288e-04	k: 909	n:2170000
Cons ci ratio: 6.932107e-04	ci left: 9.361267e-01	ci right 9.367763e-01	k: 2032101	n:2170000
KS ci ratio: 1.299195e-01	ci left: 3.921068e-04	ci right 4.470288e-04	k: 909	n:2170000
ATXN1   2170000 perm   2514 sec   (863 perm/sec)   p_kst 4.188940e-04   p_cons 9.364521e-01   p_joint 4.188940e-04

Joint ci ratio: 1.293520e-01	ci left: 3.938589e-04	ci right 4.487668e-04	k: 917	n:2180000
Cons ci ratio: 6.917163e-04	ci left: 9.361106e-01	ci right 9.367588e-01	k: 2041429	n:2180000
KS ci ratio: 1.293520e-01	ci left: 3.938589e-04	ci right 4.487668e-04	k: 917	n:2180000
ATXN1   2180000 perm   2535 sec   (860 perm/sec)   p_kst 4.206422e-04   p_cons 9.364353e-01   p_joint 4.206422e-04

Joint ci ratio: 1.292817e-01	ci left: 3.925023e-04	ci right 4.471891e-04	k: 918	n:2190000
Cons ci ratio: 6.900912e-04	ci left: 9.361190e-01	ci right 9.367657e-01	k: 2050810	n:2190000
KS ci ratio: 1.292817e-01	ci left: 3.925023e-04	ci right 4.471891e-04	k: 918	n:2190000
ATXN1   2190000 perm   2557 sec   (857 perm/sec)   p_kst 4.191781e-04   p_cons 9.364429e-01   p_joint 4.191781e-04

Joint ci ratio: 1.290013e-01	ci left: 3.924776e-04	ci right 4.470333e-04	k: 922	n:2200000
Cons ci ratio: 6.885063e-04	ci left: 9.361223e-01	ci right 9.367675e-01	k: 2060180	n:2200000
KS ci ratio: 1.290013e-01	ci left: 3.924776e-04	ci right 4.470333e-04	k: 922	n:2200000
ATXN1   2200000 perm   2578 sec   (853 perm/sec)   p_kst 4.190909e-04   p_cons 9.364455e-01   p_joint 4.190909e-04

Joint ci ratio: 1.287227e-01	ci left: 3.924533e-04	ci right 4.468788e-04	k: 926	n:2210000
Cons ci ratio: 6.868984e-04	ci left: 9.361314e-01	ci right 9.367751e-01	k: 2069563	n:2210000
KS ci ratio: 1.287227e-01	ci left: 3.924533e-04	ci right 4.468788e-04	k: 926	n:2210000
ATXN1   2210000 perm   2599 sec   (850 perm/sec)   p_kst 4.190045e-04   p_cons 9.364538e-01   p_joint 4.190045e-04

Joint ci ratio: 1.283080e-01	ci left: 3.933013e-04	ci right 4.476553e-04	k: 932	n:2220000
Cons ci ratio: 6.852550e-04	ci left: 9.361486e-01	ci right 9.367908e-01	k: 2078964	n:2220000
KS ci ratio: 1.283080e-01	ci left: 3.933013e-04	ci right 4.476553e-04	k: 932	n:2220000
ATXN1   2220000 perm   2621 sec   (847 perm/sec)   p_kst 4.198198e-04   p_cons 9.364703e-01   p_joint 4.198198e-04

Joint ci ratio: 1.282394e-01	ci left: 3.919717e-04	ci right 4.461107e-04	k: 933	n:2230000
Cons ci ratio: 6.838243e-04	ci left: 9.361306e-01	ci right 9.367714e-01	k: 2088287	n:2230000
KS ci ratio: 1.282394e-01	ci left: 3.919717e-04	ci right 4.461107e-04	k: 933	n:2230000
ATXN1   2230000 perm   2643 sec   (844 perm/sec)   p_kst 4.183857e-04   p_cons 9.364516e-01   p_joint 4.183857e-04

Joint ci ratio: 1.278975e-01	ci left: 3.923825e-04	ci right 4.464228e-04	k: 938	n:2240000
Cons ci ratio: 6.823512e-04	ci left: 9.361217e-01	ci right 9.367611e-01	k: 2097630	n:2240000
KS ci ratio: 1.278975e-01	ci left: 3.923825e-04	ci right 4.464228e-04	k: 938	n:2240000
ATXN1   2240000 perm   2664 sec   (841 perm/sec)   p_kst 4.187500e-04   p_cons 9.364420e-01   p_joint 4.187500e-04

Joint ci ratio: 1.276260e-01	ci left: 3.923595e-04	ci right 4.462732e-04	k: 942	n:2250000
Cons ci ratio: 6.809283e-04	ci left: 9.361057e-01	ci right 9.367438e-01	k: 2106957	n:2250000
KS ci ratio: 1.276260e-01	ci left: 3.923595e-04	ci right 4.462732e-04	k: 942	n:2250000
ATXN1   2250000 perm   2686 sec   (838 perm/sec)   p_kst 4.186667e-04   p_cons 9.364253e-01   p_joint 4.186667e-04

Joint ci ratio: 1.272218e-01	ci left: 3.931936e-04	ci right 4.470380e-04	k: 948	n:2260000
Cons ci ratio: 6.793653e-04	ci left: 9.361161e-01	ci right 9.367527e-01	k: 2116343	n:2260000
KS ci ratio: 1.272218e-01	ci left: 3.931936e-04	ci right 4.470380e-04	k: 948	n:2260000
ATXN1   2260000 perm   2708 sec   (834 perm/sec)   p_kst 4.194690e-04   p_cons 9.364350e-01   p_joint 4.194690e-04

Joint ci ratio: 1.268215e-01	ci left: 3.940207e-04	ci right 4.477958e-04	k: 954	n:2270000
Cons ci ratio: 6.778781e-04	ci left: 9.361149e-01	ci right 9.367501e-01	k: 2125703	n:2270000
KS ci ratio: 1.268215e-01	ci left: 3.940207e-04	ci right 4.477958e-04	k: 954	n:2270000
ATXN1   2270000 perm   2730 sec   (831 perm/sec)   p_kst 4.202643e-04   p_cons 9.364330e-01   p_joint 4.202643e-04

Joint ci ratio: 1.264249e-01	ci left: 3.948408e-04	ci right 4.485466e-04	k: 960	n:2280000
Cons ci ratio: 6.764406e-04	ci left: 9.361066e-01	ci right 9.367405e-01	k: 2135047	n:2280000
KS ci ratio: 1.264249e-01	ci left: 3.948408e-04	ci right 4.485466e-04	k: 960	n:2280000
ATXN1   2280000 perm   2752 sec   (828 perm/sec)   p_kst 4.210526e-04   p_cons 9.364241e-01   p_joint 4.210526e-04

Joint ci ratio: 1.261626e-01	ci left: 3.948081e-04	ci right 4.483898e-04	k: 964	n:2290000
Cons ci ratio: 6.749477e-04	ci left: 9.361099e-01	ci right 9.367423e-01	k: 2144417	n:2290000
KS ci ratio: 1.261626e-01	ci left: 3.948081e-04	ci right 4.483898e-04	k: 964	n:2290000
ATXN1   2290000 perm   2775 sec   (825 perm/sec)   p_kst 4.209607e-04   p_cons 9.364266e-01   p_joint 4.209607e-04

Joint ci ratio: 1.259020e-01	ci left: 3.947759e-04	ci right 4.482342e-04	k: 968	n:2300000
Cons ci ratio: 6.734229e-04	ci left: 9.361205e-01	ci right 9.367515e-01	k: 2153804	n:2300000
KS ci ratio: 1.259020e-01	ci left: 3.947759e-04	ci right 4.482342e-04	k: 968	n:2300000
ATXN1   2300000 perm   2797 sec   (822 perm/sec)   p_kst 4.208696e-04   p_cons 9.364365e-01   p_joint 4.208696e-04

Joint ci ratio: 1.254496e-01	ci left: 3.960019e-04	ci right 4.494193e-04	k: 975	n:2310000
Cons ci ratio: 6.719329e-04	ci left: 9.361266e-01	ci right 9.367563e-01	k: 2163181	n:2310000
KS ci ratio: 1.254496e-01	ci left: 3.960019e-04	ci right 4.494193e-04	k: 975	n:2310000
ATXN1   2310000 perm   2820 sec   (819 perm/sec)   p_kst 4.220779e-04   p_cons 9.364420e-01   p_joint 4.220779e-04

Joint ci ratio: 1.251295e-01	ci left: 3.963827e-04	ci right 4.497048e-04	k: 980	n:2320000
Cons ci ratio: 6.705619e-04	ci left: 9.361133e-01	ci right 9.367416e-01	k: 2172513	n:2320000
KS ci ratio: 1.251295e-01	ci left: 3.963827e-04	ci right 4.497048e-04	k: 980	n:2320000
ATXN1   2320000 perm   2842 sec   (816 perm/sec)   p_kst 4.224138e-04   p_cons 9.364280e-01   p_joint 4.224138e-04

Joint ci ratio: 1.248118e-01	ci left: 3.967603e-04	ci right 4.499877e-04	k: 985	n:2330000
Cons ci ratio: 6.691847e-04	ci left: 9.361027e-01	ci right 9.367297e-01	k: 2181851	n:2330000
KS ci ratio: 1.248118e-01	ci left: 3.967603e-04	ci right 4.499877e-04	k: 985	n:2330000
ATXN1   2330000 perm   2865 sec   (813 perm/sec)   p_kst 4.227468e-04   p_cons 9.364167e-01   p_joint 4.227468e-04

Joint ci ratio: 1.245594e-01	ci left: 3.967208e-04	ci right 4.498274e-04	k: 989	n:2340000
Cons ci ratio: 6.678160e-04	ci left: 9.360921e-01	ci right 9.367179e-01	k: 2191189	n:2340000
KS ci ratio: 1.245594e-01	ci left: 3.967208e-04	ci right 4.498274e-04	k: 989	n:2340000
ATXN1   2340000 perm   2888 sec   (810 perm/sec)   p_kst 4.226496e-04   p_cons 9.364056e-01   p_joint 4.226496e-04

Joint ci ratio: 1.243085e-01	ci left: 3.966818e-04	ci right 4.496683e-04	k: 993	n:2350000
Cons ci ratio: 6.663604e-04	ci left: 9.360988e-01	ci right 9.367232e-01	k: 2200567	n:2350000
KS ci ratio: 1.243085e-01	ci left: 3.966818e-04	ci right 4.496683e-04	k: 993	n:2350000
ATXN1   2350000 perm   2910 sec   (807 perm/sec)   p_kst 4.225532e-04   p_cons 9.364115e-01   p_joint 4.225532e-04

Joint ci ratio: 1.241214e-01	ci left: 3.962326e-04	ci right 4.490736e-04	k: 996	n:2360000
Cons ci ratio: 6.649426e-04	ci left: 9.361002e-01	ci right 9.367233e-01	k: 2209933	n:2360000
KS ci ratio: 1.241214e-01	ci left: 3.962326e-04	ci right 4.490736e-04	k: 996	n:2360000
ATXN1   2360000 perm   2933 sec   (805 perm/sec)   p_kst 4.220339e-04   p_cons 9.364123e-01   p_joint 4.220339e-04

Joint ci ratio: 1.238113e-01	ci left: 3.966050e-04	ci right 4.493539e-04	k: 1001	n:2370000
Cons ci ratio: 6.635739e-04	ci left: 9.360945e-01	ci right 9.367163e-01	k: 2219282	n:2370000
KS ci ratio: 1.238113e-01	ci left: 3.966050e-04	ci right 4.493539e-04	k: 1001	n:2370000
ATXN1   2370000 perm   2956 sec   (802 perm/sec)   p_kst 4.223629e-04   p_cons 9.364059e-01   p_joint 4.223629e-04

Joint ci ratio: 1.236264e-01	ci left: 3.961601e-04	ci right 4.487654e-04	k: 1004	n:2380000
Cons ci ratio: 6.622439e-04	ci left: 9.360833e-01	ci right 9.367039e-01	k: 2228618	n:2380000
KS ci ratio: 1.236264e-01	ci left: 3.961601e-04	ci right 4.487654e-04	k: 1004	n:2380000
ATXN1   2380000 perm   2979 sec   (799 perm/sec)   p_kst 4.218487e-04   p_cons 9.363941e-01   p_joint 4.218487e-04

Joint ci ratio: 1.233200e-01	ci left: 3.965300e-04	ci right 4.490443e-04	k: 1009	n:2390000
Cons ci ratio: 6.609149e-04	ci left: 9.360735e-01	ci right 9.366928e-01	k: 2237957	n:2390000
KS ci ratio: 1.233200e-01	ci left: 3.965300e-04	ci right 4.490443e-04	k: 1009	n:2390000
ATXN1   2390000 perm   3002 sec   (796 perm/sec)   p_kst 4.221757e-04   p_cons 9.363837e-01   p_joint 4.221757e-04

Joint ci ratio: 1.230159e-01	ci left: 3.968969e-04	ci right 4.493208e-04	k: 1014	n:2400000
Cons ci ratio: 6.595846e-04	ci left: 9.360655e-01	ci right 9.366835e-01	k: 2247300	n:2400000
KS ci ratio: 1.230159e-01	ci left: 3.968969e-04	ci right 4.493208e-04	k: 1014	n:2400000
ATXN1   2400000 perm   3025 sec   (793 perm/sec)   p_kst 4.225000e-04   p_cons 9.363750e-01   p_joint 4.225000e-04

Joint ci ratio: 1.227742e-01	ci left: 3.968588e-04	ci right 4.491671e-04	k: 1018	n:2410000
Cons ci ratio: 6.582027e-04	ci left: 9.360683e-01	ci right 9.366850e-01	k: 2256669	n:2410000
KS ci ratio: 1.227742e-01	ci left: 3.968588e-04	ci right 4.491671e-04	k: 1018	n:2410000
ATXN1   2410000 perm   3049 sec   (791 perm/sec)   p_kst 4.224066e-04   p_cons 9.363772e-01   p_joint 4.224066e-04

Joint ci ratio: 1.226539e-01	ci left: 3.960199e-04	ci right 4.481629e-04	k: 1020	n:2420000
Cons ci ratio: 6.568477e-04	ci left: 9.360678e-01	ci right 9.366832e-01	k: 2266030	n:2420000
KS ci ratio: 1.226539e-01	ci left: 3.960199e-04	ci right 4.481629e-04	k: 1020	n:2420000
ATXN1   2420000 perm   3072 sec   (788 perm/sec)   p_kst 4.214876e-04   p_cons 9.363760e-01   p_joint 4.214876e-04

Joint ci ratio: 1.224742e-01	ci left: 3.955869e-04	ci right 4.475910e-04	k: 1023	n:2430000
Cons ci ratio: 6.555508e-04	ci left: 9.360582e-01	ci right 9.366724e-01	k: 2275369	n:2430000
KS ci ratio: 1.224742e-01	ci left: 3.955869e-04	ci right 4.475910e-04	k: 1023	n:2430000
ATXN1   2430000 perm   3096 sec   (785 perm/sec)   p_kst 4.209877e-04   p_cons 9.363658e-01   p_joint 4.209877e-04

Joint ci ratio: 1.222952e-01	ci left: 3.951575e-04	ci right 4.470237e-04	k: 1026	n:2440000
Cons ci ratio: 6.540433e-04	ci left: 9.360886e-01	ci right 9.367014e-01	k: 2284805	n:2440000
KS ci ratio: 1.222952e-01	ci left: 3.951575e-04	ci right 4.470237e-04	k: 1026	n:2440000
ATXN1   2440000 perm   3119 sec   (782 perm/sec)   p_kst 4.204918e-04   p_cons 9.363955e-01   p_joint 4.204918e-04

Joint ci ratio: 1.221170e-01	ci left: 3.947317e-04	ci right 4.464611e-04	k: 1029	n:2450000
Cons ci ratio: 6.526354e-04	ci left: 9.361023e-01	ci right 9.367138e-01	k: 2294201	n:2450000
KS ci ratio: 1.221170e-01	ci left: 3.947317e-04	ci right 4.464611e-04	k: 1029	n:2450000
ATXN1   2450000 perm   3142 sec   (780 perm/sec)   p_kst 4.200000e-04   p_cons 9.364086e-01   p_joint 4.200000e-04

Joint ci ratio: 1.219396e-01	ci left: 3.943094e-04	ci right 4.459029e-04	k: 1032	n:2460000
Cons ci ratio: 6.512833e-04	ci left: 9.361074e-01	ci right 9.367176e-01	k: 2303576	n:2460000
KS ci ratio: 1.219396e-01	ci left: 3.943094e-04	ci right 4.459029e-04	k: 1032	n:2460000
ATXN1   2460000 perm   3166 sec   (777 perm/sec)   p_kst 4.195122e-04   p_cons 9.364130e-01   p_joint 4.195122e-04

Joint ci ratio: 1.218807e-01	ci left: 3.931055e-04	ci right 4.445148e-04	k: 1033	n:2470000
Cons ci ratio: 6.500059e-04	ci left: 9.361002e-01	ci right 9.367093e-01	k: 2312921	n:2470000
KS ci ratio: 1.218807e-01	ci left: 3.931055e-04	ci right 4.445148e-04	k: 1033	n:2470000
ATXN1   2470000 perm   3189 sec   (774 perm/sec)   p_kst 4.182186e-04   p_cons 9.364053e-01   p_joint 4.182186e-04

Joint ci ratio: 1.217630e-01	ci left: 3.923023e-04	ci right 4.435535e-04	k: 1035	n:2480000
Cons ci ratio: 6.487776e-04	ci left: 9.360855e-01	ci right 9.366934e-01	k: 2322247	n:2480000
KS ci ratio: 1.217630e-01	ci left: 3.923023e-04	ci right 4.435535e-04	k: 1035	n:2480000
ATXN1   2480000 perm   3213 sec   (772 perm/sec)   p_kst 4.173387e-04   p_cons 9.363899e-01   p_joint 4.173387e-04

Joint ci ratio: 1.215871e-01	ci left: 3.918949e-04	ci right 4.430136e-04	k: 1038	n:2490000
Cons ci ratio: 6.474668e-04	ci left: 9.360873e-01	ci right 9.366940e-01	k: 2331614	n:2490000
KS ci ratio: 1.215871e-01	ci left: 3.918949e-04	ci right 4.430136e-04	k: 1038	n:2490000
ATXN1   2490000 perm   3237 sec   (769 perm/sec)   p_kst 4.168675e-04   p_cons 9.363912e-01   p_joint 4.168675e-04

Joint ci ratio: 1.214120e-01	ci left: 3.914908e-04	ci right 4.424780e-04	k: 1041	n:2500000
Cons ci ratio: 6.462506e-04	ci left: 9.360731e-01	ci right 9.366787e-01	k: 2340941	n:2500000
KS ci ratio: 1.214120e-01	ci left: 3.914908e-04	ci right 4.424780e-04	k: 1041	n:2500000
ATXN1   2500000 perm   3261 sec   (767 perm/sec)   p_kst 4.164000e-04   p_cons 9.363764e-01   p_joint 4.164000e-04

Joint ci ratio: 1.211217e-01	ci left: 3.918627e-04	ci right 4.427676e-04	k: 1046	n:2510000
Cons ci ratio: 6.449485e-04	ci left: 9.360762e-01	ci right 9.366805e-01	k: 2350311	n:2510000
KS ci ratio: 1.211217e-01	ci left: 3.918627e-04	ci right 4.427676e-04	k: 1046	n:2510000
ATXN1   2510000 perm   3285 sec   (764 perm/sec)   p_kst 4.167331e-04   p_cons 9.363789e-01   p_joint 4.167331e-04

Joint ci ratio: 1.208910e-01	ci left: 3.918470e-04	ci right 4.426459e-04	k: 1050	n:2520000
Cons ci ratio: 6.437036e-04	ci left: 9.360702e-01	ci right 9.366733e-01	k: 2359658	n:2520000
KS ci ratio: 1.208910e-01	ci left: 3.918470e-04	ci right 4.426459e-04	k: 1050	n:2520000
ATXN1   2520000 perm   3310 sec   (761 perm/sec)   p_kst 4.166667e-04   p_cons 9.363722e-01   p_joint 4.166667e-04

Joint ci ratio: 1.207189e-01	ci left: 3.914481e-04	ci right 4.421179e-04	k: 1053	n:2530000
Cons ci ratio: 6.423443e-04	ci left: 9.360867e-01	ci right 9.366886e-01	k: 2369062	n:2530000
KS ci ratio: 1.207189e-01	ci left: 3.914481e-04	ci right 4.421179e-04	k: 1053	n:2530000
ATXN1   2530000 perm   3334 sec   (759 perm/sec)   p_kst 4.162055e-04   p_cons 9.363881e-01   p_joint 4.162055e-04

Joint ci ratio: 1.205475e-01	ci left: 3.910524e-04	ci right 4.415940e-04	k: 1056	n:2540000
Cons ci ratio: 6.410784e-04	ci left: 9.360874e-01	ci right 9.366880e-01	k: 2378426	n:2540000
KS ci ratio: 1.205475e-01	ci left: 3.910524e-04	ci right 4.415940e-04	k: 1056	n:2540000
ATXN1   2540000 perm   3358 sec   (756 perm/sec)   p_kst 4.157480e-04   p_cons 9.363882e-01   p_joint 4.157480e-04

Joint ci ratio: 1.200938e-01	ci left: 3.925617e-04	ci right 4.430939e-04	k: 1064	n:2550000
Cons ci ratio: 6.396787e-04	ci left: 9.361143e-01	ci right 9.367137e-01	k: 2387857	n:2550000
KS ci ratio: 1.200938e-01	ci left: 3.925617e-04	ci right 4.430939e-04	k: 1064	n:2550000
ATXN1   2550000 perm   3383 sec   (754 perm/sec)   p_kst 4.172549e-04   p_cons 9.364145e-01   p_joint 4.172549e-04

Joint ci ratio: 1.199812e-01	ci left: 3.917861e-04	ci right 4.421677e-04	k: 1066	n:2560000
Cons ci ratio: 6.384012e-04	ci left: 9.361199e-01	ci right 9.367181e-01	k: 2397234	n:2560000
KS ci ratio: 1.199812e-01	ci left: 3.917861e-04	ci right 4.421677e-04	k: 1066	n:2560000
ATXN1   2560000 perm   3407 sec   (751 perm/sec)   p_kst 4.164063e-04   p_cons 9.364195e-01   p_joint 4.164063e-04

Joint ci ratio: 1.195895e-01	ci left: 3.929038e-04	ci right 4.432525e-04	k: 1073	n:2570000
Cons ci ratio: 6.371854e-04	ci left: 9.361154e-01	ci right 9.367124e-01	k: 2406585	n:2570000
KS ci ratio: 1.195895e-01	ci left: 3.929038e-04	ci right 4.432525e-04	k: 1073	n:2570000
ATXN1   2570000 perm   3432 sec   (749 perm/sec)   p_kst 4.175097e-04   p_cons 9.364144e-01   p_joint 4.175097e-04

Joint ci ratio: 1.193674e-01	ci left: 3.928849e-04	ci right 4.431312e-04	k: 1077	n:2580000
Cons ci ratio: 6.359849e-04	ci left: 9.361093e-01	ci right 9.367052e-01	k: 2415932	n:2580000
KS ci ratio: 1.193674e-01	ci left: 3.928849e-04	ci right 4.431312e-04	k: 1077	n:2580000
ATXN1   2580000 perm   3457 sec   (746 perm/sec)   p_kst 4.174419e-04   p_cons 9.364078e-01   p_joint 4.174419e-04

Joint ci ratio: 1.190915e-01	ci left: 3.932409e-04	ci right 4.434083e-04	k: 1082	n:2590000
Cons ci ratio: 6.347499e-04	ci left: 9.361110e-01	ci right 9.367058e-01	k: 2425299	n:2590000
KS ci ratio: 1.190915e-01	ci left: 3.932409e-04	ci right 4.434083e-04	k: 1082	n:2590000
ATXN1   2590000 perm   3482 sec   (744 perm/sec)   p_kst 4.177606e-04   p_cons 9.364089e-01   p_joint 4.177606e-04

Joint ci ratio: 1.188176e-01	ci left: 3.935943e-04	ci right 4.436832e-04	k: 1087	n:2600000
Cons ci ratio: 6.334914e-04	ci left: 9.361185e-01	ci right 9.367121e-01	k: 2434681	n:2600000
KS ci ratio: 1.188176e-01	ci left: 3.935943e-04	ci right 4.436832e-04	k: 1087	n:2600000
ATXN1   2600000 perm   3507 sec   (741 perm/sec)   p_kst 4.180769e-04   p_cons 9.364158e-01   p_joint 4.180769e-04

Joint ci ratio: 1.185455e-01	ci left: 3.939451e-04	ci right 4.439558e-04	k: 1092	n:2610000
Cons ci ratio: 6.322932e-04	ci left: 9.361159e-01	ci right 9.367084e-01	k: 2444037	n:2610000
KS ci ratio: 1.185455e-01	ci left: 3.939451e-04	ci right 4.439558e-04	k: 1092	n:2610000
ATXN1   2610000 perm   3532 sec   (739 perm/sec)   p_kst 4.183908e-04   p_cons 9.364126e-01   p_joint 4.183908e-04

Joint ci ratio: 1.183291e-01	ci left: 3.939230e-04	ci right 4.438332e-04	k: 1096	n:2620000
Cons ci ratio: 6.310614e-04	ci left: 9.361210e-01	ci right 9.367123e-01	k: 2453413	n:2620000
KS ci ratio: 1.183291e-01	ci left: 3.939230e-04	ci right 4.438332e-04	k: 1096	n:2620000
ATXN1   2620000 perm   3557 sec   (737 perm/sec)   p_kst 4.183206e-04   p_cons 9.364172e-01   p_joint 4.183206e-04

Joint ci ratio: 1.182753e-01	ci left: 3.927942e-04	ci right 4.425371e-04	k: 1097	n:2630000
Cons ci ratio: 6.298790e-04	ci left: 9.361181e-01	ci right 9.367083e-01	k: 2462768	n:2630000
KS ci ratio: 1.182753e-01	ci left: 3.927942e-04	ci right 4.425371e-04	k: 1097	n:2630000
ATXN1   2630000 perm   3582 sec   (734 perm/sec)   p_kst 4.171103e-04   p_cons 9.364137e-01   p_joint 4.171103e-04

Joint ci ratio: 1.181141e-01	ci left: 3.924091e-04	ci right 4.420308e-04	k: 1100	n:2640000
Cons ci ratio: 6.287171e-04	ci left: 9.361125e-01	ci right 9.367016e-01	k: 2472116	n:2640000
KS ci ratio: 1.181141e-01	ci left: 3.924091e-04	ci right 4.420308e-04	k: 1100	n:2640000
ATXN1   2640000 perm   3607 sec   (732 perm/sec)   p_kst 4.166667e-04   p_cons 9.364076e-01   p_joint 4.166667e-04

Joint ci ratio: 1.180070e-01	ci left: 3.916607e-04	ci right 4.411398e-04	k: 1102	n:2650000
Cons ci ratio: 6.275060e-04	ci left: 9.361176e-01	ci right 9.367056e-01	k: 2481492	n:2650000
KS ci ratio: 1.180070e-01	ci left: 3.916607e-04	ci right 4.411398e-04	k: 1102	n:2650000
ATXN1   2650000 perm   3633 sec   (729 perm/sec)   p_kst 4.158491e-04   p_cons 9.364121e-01   p_joint 4.158491e-04

Joint ci ratio: 1.177404e-01	ci left: 3.920126e-04	ci right 4.414164e-04	k: 1107	n:2660000
Cons ci ratio: 6.263375e-04	ci left: 9.361159e-01	ci right 9.367027e-01	k: 2490850	n:2660000
KS ci ratio: 1.177404e-01	ci left: 3.920126e-04	ci right 4.414164e-04	k: 1107	n:2660000
ATXN1   2660000 perm   3658 sec   (727 perm/sec)   p_kst 4.161654e-04   p_cons 9.364098e-01   p_joint 4.161654e-04

Joint ci ratio: 1.174229e-01	ci left: 3.927255e-04	ci right 4.420764e-04	k: 1113	n:2670000
Cons ci ratio: 6.251892e-04	ci left: 9.361115e-01	ci right 9.366973e-01	k: 2500201	n:2670000
KS ci ratio: 1.174229e-01	ci left: 3.927255e-04	ci right 4.420764e-04	k: 1113	n:2670000
ATXN1   2670000 perm   3684 sec   (725 perm/sec)   p_kst 4.168539e-04   p_cons 9.364049e-01   p_joint 4.168539e-04

Joint ci ratio: 1.173177e-01	ci left: 3.919844e-04	ci right 4.411951e-04	k: 1115	n:2680000
Cons ci ratio: 6.240629e-04	ci left: 9.361042e-01	ci right 9.366889e-01	k: 2509544	n:2680000
KS ci ratio: 1.173177e-01	ci left: 3.919844e-04	ci right 4.411951e-04	k: 1115	n:2680000
ATXN1   2680000 perm   3710 sec   (722 perm/sec)   p_kst 4.160448e-04   p_cons 9.363970e-01   p_joint 4.160448e-04

Joint ci ratio: 1.168993e-01	ci left: 3.934141e-04	ci right 4.426160e-04	k: 1123	n:2690000
Cons ci ratio: 6.229309e-04	ci left: 9.360991e-01	ci right 9.366828e-01	k: 2518893	n:2690000
KS ci ratio: 1.168993e-01	ci left: 3.934141e-04	ci right 4.426160e-04	k: 1123	n:2690000
ATXN1   2690000 perm   3735 sec   (720 perm/sec)   p_kst 4.174721e-04   p_cons 9.363914e-01   p_joint 4.174721e-04

Joint ci ratio: 1.166919e-01	ci left: 3.933952e-04	ci right 4.425014e-04	k: 1127	n:2700000
Cons ci ratio: 6.217317e-04	ci left: 9.361083e-01	ci right 9.366908e-01	k: 2528280	n:2700000
KS ci ratio: 1.166919e-01	ci left: 3.933952e-04	ci right 4.425014e-04	k: 1127	n:2700000
ATXN1   2700000 perm   3761 sec   (718 perm/sec)   p_kst 4.174074e-04   p_cons 9.364000e-01   p_joint 4.174074e-04

Joint ci ratio: 1.165371e-01	ci left: 3.930183e-04	ci right 4.420078e-04	k: 1130	n:2710000
Cons ci ratio: 6.205335e-04	ci left: 9.361184e-01	ci right 9.366998e-01	k: 2537670	n:2710000
KS ci ratio: 1.165371e-01	ci left: 3.930183e-04	ci right 4.420078e-04	k: 1130	n:2710000
ATXN1   2710000 perm   3787 sec   (716 perm/sec)   p_kst 4.169742e-04   p_cons 9.364096e-01   p_joint 4.169742e-04

Joint ci ratio: 1.164342e-01	ci left: 3.922873e-04	ci right 4.411395e-04	k: 1132	n:2720000
Cons ci ratio: 6.194187e-04	ci left: 9.361138e-01	ci right 9.366941e-01	k: 2547020	n:2720000
KS ci ratio: 1.164342e-01	ci left: 3.922873e-04	ci right 4.411395e-04	k: 1132	n:2720000
ATXN1   2720000 perm   3813 sec   (713 perm/sec)   p_kst 4.161765e-04   p_cons 9.364044e-01   p_joint 4.161765e-04

Joint ci ratio: 1.163829e-01	ci left: 3.912059e-04	ci right 4.399006e-04	k: 1133	n:2730000
Cons ci ratio: 6.182738e-04	ci left: 9.361161e-01	ci right 9.366954e-01	k: 2556389	n:2730000
KS ci ratio: 1.163829e-01	ci left: 3.912059e-04	ci right 4.399006e-04	k: 1133	n:2730000
ATXN1   2730000 perm   3839 sec   (711 perm/sec)   p_kst 4.150183e-04   p_cons 9.364062e-01   p_joint 4.150183e-04

Joint ci ratio: 1.161782e-01	ci left: 3.911956e-04	ci right 4.397974e-04	k: 1137	n:2740000
Cons ci ratio: 6.171068e-04	ci left: 9.361239e-01	ci right 9.367022e-01	k: 2565773	n:2740000
KS ci ratio: 1.161782e-01	ci left: 3.911956e-04	ci right 4.397974e-04	k: 1137	n:2740000
ATXN1   2740000 perm   3866 sec   (709 perm/sec)   p_kst 4.149635e-04   p_cons 9.364135e-01   p_joint 4.149635e-04

Joint ci ratio: 1.160254e-01	ci left: 3.908323e-04	ci right 4.393207e-04	k: 1140	n:2750000
Cons ci ratio: 6.159050e-04	ci left: 9.361397e-01	ci right 9.367168e-01	k: 2575179	n:2750000
KS ci ratio: 1.160254e-01	ci left: 3.908323e-04	ci right 4.393207e-04	k: 1140	n:2750000
ATXN1   2750000 perm   3892 sec   (707 perm/sec)   p_kst 4.145455e-04   p_cons 9.364287e-01   p_joint 4.145455e-04

Joint ci ratio: 1.158732e-01	ci left: 3.904716e-04	ci right 4.388475e-04	k: 1143	n:2760000
Cons ci ratio: 6.147532e-04	ci left: 9.361470e-01	ci right 9.367231e-01	k: 2584562	n:2760000
KS ci ratio: 1.158732e-01	ci left: 3.904716e-04	ci right 4.388475e-04	k: 1143	n:2760000
ATXN1   2760000 perm   3918 sec   (704 perm/sec)   p_kst 4.141304e-04   p_cons 9.364355e-01   p_joint 4.141304e-04

Joint ci ratio: 1.158226e-01	ci left: 3.894125e-04	ci right 4.376347e-04	k: 1144	n:2770000
Cons ci ratio: 6.137251e-04	ci left: 9.361315e-01	ci right 9.367066e-01	k: 2593882	n:2770000
KS ci ratio: 1.158226e-01	ci left: 3.894125e-04	ci right 4.376347e-04	k: 1144	n:2770000
ATXN1   2770000 perm   3945 sec   (702 perm/sec)   p_kst 4.129964e-04   p_cons 9.364195e-01   p_joint 4.129964e-04

Joint ci ratio: 1.156209e-01	ci left: 3.894090e-04	ci right 4.375409e-04	k: 1148	n:2780000
Cons ci ratio: 6.126169e-04	ci left: 9.361327e-01	ci right 9.367067e-01	k: 2603248	n:2780000
KS ci ratio: 1.156209e-01	ci left: 3.894090e-04	ci right 4.375409e-04	k: 1148	n:2780000
ATXN1   2780000 perm   3971 sec   (700 perm/sec)   p_kst 4.129496e-04   p_cons 9.364201e-01   p_joint 4.129496e-04

Joint ci ratio: 1.153201e-01	ci left: 3.901017e-04	ci right 4.381853e-04	k: 1154	n:2790000
Cons ci ratio: 6.115387e-04	ci left: 9.361292e-01	ci right 9.367022e-01	k: 2612601	n:2790000
KS ci ratio: 1.153201e-01	ci left: 3.901017e-04	ci right 4.381853e-04	k: 1154	n:2790000
ATXN1   2790000 perm   3998 sec   (698 perm/sec)   p_kst 4.136201e-04   p_cons 9.364161e-01   p_joint 4.136201e-04

Joint ci ratio: 1.151707e-01	ci left: 3.897490e-04	ci right 4.377226e-04	k: 1157	n:2800000
Cons ci ratio: 6.104093e-04	ci left: 9.361368e-01	ci right 9.367087e-01	k: 2621985	n:2800000
KS ci ratio: 1.151707e-01	ci left: 3.897490e-04	ci right 4.377226e-04	k: 1157	n:2800000
ATXN1   2800000 perm   4025 sec   (696 perm/sec)   p_kst 4.132143e-04   p_cons 9.364232e-01   p_joint 4.132143e-04

Joint ci ratio: 1.149723e-01	ci left: 3.897445e-04	ci right 4.376294e-04	k: 1161	n:2810000
Cons ci ratio: 6.093172e-04	ci left: 9.361383e-01	ci right 9.367092e-01	k: 2631352	n:2810000
KS ci ratio: 1.149723e-01	ci left: 3.897445e-04	ci right 4.376294e-04	k: 1161	n:2810000
ATXN1   2810000 perm   4051 sec   (694 perm/sec)   p_kst 4.131673e-04   p_cons 9.364242e-01   p_joint 4.131673e-04

Joint ci ratio: 1.149229e-01	ci left: 3.887068e-04	ci right 4.364423e-04	k: 1162	n:2820000
Cons ci ratio: 6.082834e-04	ci left: 9.361295e-01	ci right 9.366994e-01	k: 2640690	n:2820000
KS ci ratio: 1.149229e-01	ci left: 3.887068e-04	ci right 4.364423e-04	k: 1162	n:2820000
ATXN1   2820000 perm   4078 sec   (691 perm/sec)   p_kst 4.120567e-04   p_cons 9.364149e-01   p_joint 4.120567e-04

Joint ci ratio: 1.149230e-01	ci left: 3.873333e-04	ci right 4.349001e-04	k: 1162	n:2830000
Cons ci ratio: 6.072458e-04	ci left: 9.361225e-01	ci right 9.366915e-01	k: 2650033	n:2830000
KS ci ratio: 1.149230e-01	ci left: 3.873333e-04	ci right 4.349001e-04	k: 1162	n:2830000
ATXN1   2830000 perm   4105 sec   (689 perm/sec)   p_kst 4.106007e-04   p_cons 9.364074e-01   p_joint 4.106007e-04

Joint ci ratio: 1.147751e-01	ci left: 3.869954e-04	ci right 4.344555e-04	k: 1165	n:2840000
Cons ci ratio: 6.061616e-04	ci left: 9.361258e-01	ci right 9.366937e-01	k: 2659405	n:2840000
KS ci ratio: 1.147751e-01	ci left: 3.869954e-04	ci right 4.344555e-04	k: 1165	n:2840000
ATXN1   2840000 perm   4132 sec   (687 perm/sec)   p_kst 4.102113e-04   p_cons 9.364102e-01   p_joint 4.102113e-04

Joint ci ratio: 1.146277e-01	ci left: 3.866600e-04	ci right 4.340139e-04	k: 1168	n:2850000
Cons ci ratio: 6.051420e-04	ci left: 9.361175e-01	ci right 9.366845e-01	k: 2668744	n:2850000
KS ci ratio: 1.146277e-01	ci left: 3.866600e-04	ci right 4.340139e-04	k: 1168	n:2850000
ATXN1   2850000 perm   4160 sec   (685 perm/sec)   p_kst 4.098246e-04   p_cons 9.364014e-01   p_joint 4.098246e-04

Joint ci ratio: 1.144321e-01	ci left: 3.866666e-04	ci right 4.339350e-04	k: 1172	n:2860000
Cons ci ratio: 6.040317e-04	ci left: 9.361281e-01	ci right 9.366941e-01	k: 2678137	n:2860000
KS ci ratio: 1.144321e-01	ci left: 3.866666e-04	ci right 4.339350e-04	k: 1172	n:2860000
ATXN1   2860000 perm   4187 sec   (683 perm/sec)   p_kst 4.097902e-04   p_cons 9.364115e-01   p_joint 4.097902e-04

Joint ci ratio: 1.142861e-01	ci left: 3.863347e-04	ci right 4.334982e-04	k: 1175	n:2870000
Cons ci ratio: 6.030245e-04	ci left: 9.361195e-01	ci right 9.366845e-01	k: 2687475	n:2870000
KS ci ratio: 1.142861e-01	ci left: 3.863347e-04	ci right 4.334982e-04	k: 1175	n:2870000
ATXN1   2870000 perm   4214 sec   (681 perm/sec)   p_kst 4.094077e-04   p_cons 9.364024e-01   p_joint 4.094077e-04

Joint ci ratio: 1.139474e-01	ci left: 3.873544e-04	ci right 4.344929e-04	k: 1182	n:2880000
Cons ci ratio: 6.020013e-04	ci left: 9.361151e-01	ci right 9.366792e-01	k: 2696825	n:2880000
KS ci ratio: 1.139474e-01	ci left: 3.873544e-04	ci right 4.344929e-04	k: 1182	n:2880000
ATXN1   2880000 perm   4241 sec   (679 perm/sec)   p_kst 4.104167e-04   p_cons 9.363976e-01   p_joint 4.104167e-04

Joint ci ratio: 1.137073e-01	ci left: 3.876950e-04	ci right 4.347688e-04	k: 1187	n:2890000
Cons ci ratio: 6.010129e-04	ci left: 9.361049e-01	ci right 9.366680e-01	k: 2706158	n:2890000
KS ci ratio: 1.137073e-01	ci left: 3.876950e-04	ci right 4.347688e-04	k: 1187	n:2890000
ATXN1   2890000 perm   4269 sec   (677 perm/sec)   p_kst 4.107266e-04   p_cons 9.363869e-01   p_joint 4.107266e-04

Joint ci ratio: 1.135641e-01	ci left: 3.873632e-04	ci right 4.343335e-04	k: 1190	n:2900000
Cons ci ratio: 6.000172e-04	ci left: 9.360971e-01	ci right 9.366593e-01	k: 2715498	n:2900000
KS ci ratio: 1.135641e-01	ci left: 3.873632e-04	ci right 4.343335e-04	k: 1190	n:2900000
ATXN1   2900000 perm   4296 sec   (675 perm/sec)   p_kst 4.103448e-04   p_cons 9.363786e-01   p_joint 4.103448e-04

Joint ci ratio: 1.135641e-01	ci left: 3.860320e-04	ci right 4.328409e-04	k: 1190	n:2910000
Cons ci ratio: 5.990386e-04	ci left: 9.360870e-01	ci right 9.366482e-01	k: 2724831	n:2910000
KS ci ratio: 1.135641e-01	ci left: 3.860320e-04	ci right 4.328409e-04	k: 1190	n:2910000
ATXN1   2910000 perm   4324 sec   (673 perm/sec)   p_kst 4.089347e-04   p_cons 9.363680e-01   p_joint 4.089347e-04

Joint ci ratio: 1.133265e-01	ci left: 3.863737e-04	ci right 4.331195e-04	k: 1195	n:2920000
Cons ci ratio: 5.980303e-04	ci left: 9.360838e-01	ci right 9.366441e-01	k: 2734184	n:2920000
KS ci ratio: 1.133265e-01	ci left: 3.863737e-04	ci right 4.331195e-04	k: 1195	n:2920000
ATXN1   2920000 perm   4352 sec   (671 perm/sec)   p_kst 4.092466e-04   p_cons 9.363644e-01   p_joint 4.092466e-04

Joint ci ratio: 1.132319e-01	ci left: 3.857183e-04	ci right 4.323432e-04	k: 1197	n:2930000
Cons ci ratio: 5.969844e-04	ci left: 9.360892e-01	ci right 9.366485e-01	k: 2743562	n:2930000
KS ci ratio: 1.132319e-01	ci left: 3.857183e-04	ci right 4.323432e-04	k: 1197	n:2930000
ATXN1   2930000 perm   4380 sec   (669 perm/sec)   p_kst 4.085324e-04   p_cons 9.363693e-01   p_joint 4.085324e-04

Joint ci ratio: 1.128556e-01	ci left: 3.870505e-04	ci right 4.336706e-04	k: 1205	n:2940000
Cons ci ratio: 5.959541e-04	ci left: 9.360925e-01	ci right 9.366509e-01	k: 2752934	n:2940000
KS ci ratio: 1.128556e-01	ci left: 3.870505e-04	ci right 4.336706e-04	k: 1205	n:2940000
ATXN1   2940000 perm   4408 sec   (667 perm/sec)   p_kst 4.098639e-04   p_cons 9.363721e-01   p_joint 4.098639e-04

Joint ci ratio: 1.126224e-01	ci left: 3.873856e-04	ci right 4.339432e-04	k: 1210	n:2950000
Cons ci ratio: 5.948885e-04	ci left: 9.361039e-01	ci right 9.366613e-01	k: 2762330	n:2950000
KS ci ratio: 1.126224e-01	ci left: 3.873856e-04	ci right 4.339432e-04	k: 1210	n:2950000
ATXN1   2950000 perm   4436 sec   (665 perm/sec)   p_kst 4.101695e-04   p_cons 9.363831e-01   p_joint 4.101695e-04

Joint ci ratio: 1.123444e-01	ci left: 3.880468e-04	ci right 4.345612e-04	k: 1216	n:2960000
Cons ci ratio: 5.939364e-04	ci left: 9.360936e-01	ci right 9.366501e-01	k: 2771662	n:2960000
KS ci ratio: 1.123444e-01	ci left: 3.880468e-04	ci right 4.345612e-04	k: 1216	n:2960000
ATXN1   2960000 perm   4464 sec   (663 perm/sec)   p_kst 4.108108e-04   p_cons 9.363723e-01   p_joint 4.108108e-04

Joint ci ratio: 1.120684e-01	ci left: 3.887038e-04	ci right 4.351749e-04	k: 1222	n:2970000
Cons ci ratio: 5.928698e-04	ci left: 9.361074e-01	ci right 9.366628e-01	k: 2781065	n:2970000
KS ci ratio: 1.120684e-01	ci left: 3.887038e-04	ci right 4.351749e-04	k: 1222	n:2970000
ATXN1   2970000 perm   4492 sec   (661 perm/sec)   p_kst 4.114478e-04   p_cons 9.363855e-01   p_joint 4.114478e-04

Joint ci ratio: 1.119770e-01	ci left: 3.880517e-04	ci right 4.344046e-04	k: 1224	n:2980000
Cons ci ratio: 5.918206e-04	ci left: 9.361186e-01	ci right 9.366731e-01	k: 2790461	n:2980000
KS ci ratio: 1.119770e-01	ci left: 3.880517e-04	ci right 4.344046e-04	k: 1224	n:2980000
ATXN1   2980000 perm   4521 sec   (659 perm/sec)   p_kst 4.107383e-04   p_cons 9.363963e-01   p_joint 4.107383e-04

Joint ci ratio: 1.118401e-01	ci left: 3.877292e-04	ci right 4.339831e-04	k: 1227	n:2990000
Cons ci ratio: 5.908782e-04	ci left: 9.361094e-01	ci right 9.366630e-01	k: 2799796	n:2990000
KS ci ratio: 1.118401e-01	ci left: 3.877292e-04	ci right 4.339831e-04	k: 1227	n:2990000
ATXN1   2990000 perm   4551 sec   (657 perm/sec)   p_kst 4.103679e-04   p_cons 9.363866e-01   p_joint 4.103679e-04

Joint ci ratio: 1.117038e-01	ci left: 3.874088e-04	ci right 4.335645e-04	k: 1230	n:3000000
Cons ci ratio: 5.899468e-04	ci left: 9.360989e-01	ci right 9.366516e-01	k: 2809127	n:3000000
KS ci ratio: 1.117038e-01	ci left: 3.874088e-04	ci right 4.335645e-04	k: 1230	n:3000000
ATXN1   3000000 perm   4580 sec   (655 perm/sec)   p_kst 4.100000e-04   p_cons 9.363757e-01   p_joint 4.100000e-04

Joint ci ratio: 1.114325e-01	ci left: 3.880594e-04	ci right 4.341730e-04	k: 1236	n:3010000
Cons ci ratio: 5.889787e-04	ci left: 9.360968e-01	ci right 9.366486e-01	k: 2818483	n:3010000
KS ci ratio: 1.114325e-01	ci left: 3.880594e-04	ci right 4.341730e-04	k: 1236	n:3010000
ATXN1   3010000 perm   4609 sec   (653 perm/sec)   p_kst 4.106312e-04   p_cons 9.363731e-01   p_joint 4.106312e-04

Joint ci ratio: 1.113426e-01	ci left: 3.874183e-04	ci right 4.334160e-04	k: 1238	n:3020000
Cons ci ratio: 5.880677e-04	ci left: 9.360840e-01	ci right 9.366350e-01	k: 2827807	n:3020000
KS ci ratio: 1.113426e-01	ci left: 3.874183e-04	ci right 4.334160e-04	k: 1238	n:3020000
ATXN1   3020000 perm   4639 sec   (651 perm/sec)   p_kst 4.099338e-04   p_cons 9.363599e-01   p_joint 4.099338e-04

Joint ci ratio: 1.112080e-01	ci left: 3.871022e-04	ci right 4.330033e-04	k: 1241	n:3030000
Cons ci ratio: 5.870584e-04	ci left: 9.360922e-01	ci right 9.366423e-01	k: 2837194	n:3030000
KS ci ratio: 1.112080e-01	ci left: 3.871022e-04	ci right 4.330033e-04	k: 1241	n:3030000
ATXN1   3030000 perm   4670 sec   (649 perm/sec)   p_kst 4.095710e-04   p_cons 9.363677e-01   p_joint 4.095710e-04

Joint ci ratio: 1.109404e-01	ci left: 3.877477e-04	ci right 4.336074e-04	k: 1247	n:3040000
Cons ci ratio: 5.861239e-04	ci left: 9.360862e-01	ci right 9.366353e-01	k: 2846538	n:3040000
KS ci ratio: 1.109404e-01	ci left: 3.877477e-04	ci right 4.336074e-04	k: 1247	n:3040000
ATXN1   3040000 perm   4699 sec   (647 perm/sec)   p_kst 4.101974e-04   p_cons 9.363612e-01   p_joint 4.101974e-04

Joint ci ratio: 1.107188e-01	ci left: 3.880703e-04	ci right 4.338705e-04	k: 1252	n:3050000
Cons ci ratio: 5.851230e-04	ci left: 9.360947e-01	ci right 9.366429e-01	k: 2855926	n:3050000
KS ci ratio: 1.107188e-01	ci left: 3.880703e-04	ci right 4.338705e-04	k: 1252	n:3050000
ATXN1   3050000 perm   4730 sec   (645 perm/sec)   p_kst 4.104918e-04   p_cons 9.363692e-01   p_joint 4.104918e-04

Joint ci ratio: 1.105425e-01	ci left: 3.880731e-04	ci right 4.337960e-04	k: 1256	n:3060000
Cons ci ratio: 5.840823e-04	ci left: 9.361122e-01	ci right 9.366595e-01	k: 2865342	n:3060000
KS ci ratio: 1.105425e-01	ci left: 3.880731e-04	ci right 4.337960e-04	k: 1256	n:3060000
ATXN1   3060000 perm   4760 sec   (643 perm/sec)   p_kst 4.104575e-04   p_cons 9.363863e-01   p_joint 4.104575e-04

Joint ci ratio: 1.104108e-01	ci left: 3.877592e-04	ci right 4.333872e-04	k: 1259	n:3070000
Cons ci ratio: 5.831508e-04	ci left: 9.361085e-01	ci right 9.366549e-01	k: 2874693	n:3070000
KS ci ratio: 1.104108e-01	ci left: 3.877592e-04	ci right 4.333872e-04	k: 1259	n:3070000
ATXN1   3070000 perm   4791 sec   (641 perm/sec)   p_kst 4.100977e-04   p_cons 9.363821e-01   p_joint 4.100977e-04

Joint ci ratio: 1.101488e-01	ci left: 3.883946e-04	ci right 4.339818e-04	k: 1265	n:3080000
Cons ci ratio: 5.821571e-04	ci left: 9.361184e-01	ci right 9.366639e-01	k: 2884086	n:3080000
KS ci ratio: 1.101488e-01	ci left: 3.883946e-04	ci right 4.339818e-04	k: 1265	n:3080000
ATXN1   3080000 perm   4822 sec   (639 perm/sec)   p_kst 4.107143e-04   p_cons 9.363916e-01   p_joint 4.107143e-04

Joint ci ratio: 1.098455e-01	ci left: 3.893407e-04	ci right 4.349050e-04	k: 1272	n:3090000
Cons ci ratio: 5.812647e-04	ci left: 9.361085e-01	ci right 9.366531e-01	k: 2893418	n:3090000
KS ci ratio: 1.098455e-01	ci left: 3.893407e-04	ci right 4.349050e-04	k: 1272	n:3090000
ATXN1   3090000 perm   4852 sec   (637 perm/sec)   p_kst 4.116505e-04   p_cons 9.363812e-01   p_joint 4.116505e-04

Joint ci ratio: 1.097594e-01	ci left: 3.887122e-04	ci right 4.341650e-04	k: 1274	n:3100000
Cons ci ratio: 5.803418e-04	ci left: 9.361058e-01	ci right 9.366495e-01	k: 2902772	n:3100000
KS ci ratio: 1.097594e-01	ci left: 3.887122e-04	ci right 4.341650e-04	k: 1274	n:3100000
ATXN1   3100000 perm   4882 sec   (635 perm/sec)   p_kst 4.109677e-04   p_cons 9.363781e-01   p_joint 4.109677e-04

Joint ci ratio: 1.095448e-01	ci left: 3.890260e-04	ci right 4.344207e-04	k: 1279	n:3110000
Cons ci ratio: 5.793842e-04	ci left: 9.361111e-01	ci right 9.366540e-01	k: 2912151	n:3110000
KS ci ratio: 1.095448e-01	ci left: 3.890260e-04	ci right 4.344207e-04	k: 1279	n:3110000
ATXN1   3110000 perm   4913 sec   (633 perm/sec)   p_kst 4.112540e-04   p_cons 9.363830e-01   p_joint 4.112540e-04

Joint ci ratio: 1.092889e-01	ci left: 3.896495e-04	ci right 4.350040e-04	k: 1285	n:3120000
Cons ci ratio: 5.784516e-04	ci left: 9.361123e-01	ci right 9.366542e-01	k: 2921517	n:3120000
KS ci ratio: 1.092889e-01	ci left: 3.896495e-04	ci right 4.350040e-04	k: 1285	n:3120000
ATXN1   3120000 perm   4944 sec   (631 perm/sec)   p_kst 4.118590e-04   p_cons 9.363837e-01   p_joint 4.118590e-04

Joint ci ratio: 1.092890e-01	ci left: 3.884046e-04	ci right 4.336143e-04	k: 1285	n:3130000
Cons ci ratio: 5.774863e-04	ci left: 9.361211e-01	ci right 9.366621e-01	k: 2930907	n:3130000
KS ci ratio: 1.092890e-01	ci left: 3.884046e-04	ci right 4.336143e-04	k: 1285	n:3130000
ATXN1   3130000 perm   4975 sec   (629 perm/sec)   p_kst 4.105431e-04   p_cons 9.363920e-01   p_joint 4.105431e-04

Joint ci ratio: 1.091617e-01	ci left: 3.880970e-04	ci right 4.332148e-04	k: 1288	n:3140000
Cons ci ratio: 5.766075e-04	ci left: 9.361129e-01	ci right 9.366532e-01	k: 2940244	n:3140000
KS ci ratio: 1.091617e-01	ci left: 3.880970e-04	ci right 4.332148e-04	k: 1288	n:3140000
ATXN1   3140000 perm   5007 sec   (627 perm/sec)   p_kst 4.101911e-04   p_cons 9.363834e-01   p_joint 4.101911e-04

Joint ci ratio: 1.089085e-01	ci left: 3.887178e-04	ci right 4.337962e-04	k: 1294	n:3150000
Cons ci ratio: 5.756728e-04	ci left: 9.361172e-01	ci right 9.366566e-01	k: 2949620	n:3150000
KS ci ratio: 1.089085e-01	ci left: 3.887178e-04	ci right 4.337962e-04	k: 1294	n:3150000
ATXN1   3150000 perm   5038 sec   (625 perm/sec)   p_kst 4.107937e-04   p_cons 9.363873e-01   p_joint 4.107937e-04

Joint ci ratio: 1.085319e-01	ci left: 3.902583e-04	ci right 4.353489e-04	k: 1303	n:3160000
Cons ci ratio: 5.746985e-04	ci left: 9.361307e-01	ci right 9.366691e-01	k: 2959025	n:3160000
KS ci ratio: 1.085319e-01	ci left: 3.902583e-04	ci right 4.353489e-04	k: 1303	n:3160000
ATXN1   3160000 perm   5069 sec   (623 perm/sec)   p_kst 4.123418e-04   p_cons 9.364003e-01   p_joint 4.123418e-04

Joint ci ratio: 1.081593e-01	ci left: 3.917894e-04	ci right 4.368916e-04	k: 1312	n:3170000
Cons ci ratio: 5.737502e-04	ci left: 9.361396e-01	ci right 9.366772e-01	k: 2968416	n:3170000
KS ci ratio: 1.081593e-01	ci left: 3.917894e-04	ci right 4.368916e-04	k: 1312	n:3170000
ATXN1   3170000 perm   5099 sec   (622 perm/sec)   p_kst 4.138801e-04   p_cons 9.364088e-01   p_joint 4.138801e-04

Joint ci ratio: 1.079129e-01	ci left: 3.923932e-04	ci right 4.374555e-04	k: 1318	n:3180000
Cons ci ratio: 5.728869e-04	ci left: 9.361319e-01	ci right 9.366686e-01	k: 2977754	n:3180000
KS ci ratio: 1.079129e-01	ci left: 3.923932e-04	ci right 4.374555e-04	k: 1318	n:3180000
ATXN1   3180000 perm   5130 sec   (620 perm/sec)   p_kst 4.144654e-04   p_cons 9.364006e-01   p_joint 4.144654e-04

Joint ci ratio: 1.075871e-01	ci left: 3.936034e-04	ci right 4.386595e-04	k: 1326	n:3190000
Cons ci ratio: 5.719882e-04	ci left: 9.361323e-01	ci right 9.366682e-01	k: 2987118	n:3190000
KS ci ratio: 1.075871e-01	ci left: 3.936034e-04	ci right 4.386595e-04	k: 1326	n:3190000
ATXN1   3190000 perm   5161 sec   (618 perm/sec)   p_kst 4.156740e-04   p_cons 9.364006e-01   p_joint 4.156740e-04

Joint ci ratio: 1.074253e-01	ci left: 3.935898e-04	ci right 4.385723e-04	k: 1330	n:3200000
Cons ci ratio: 5.710518e-04	ci left: 9.361415e-01	ci right 9.366765e-01	k: 2996510	n:3200000
KS ci ratio: 1.074253e-01	ci left: 3.935898e-04	ci right 4.385723e-04	k: 1330	n:3200000
ATXN1   3200000 perm   5191 sec   (616 perm/sec)   p_kst 4.156250e-04   p_cons 9.364094e-01   p_joint 4.156250e-04

Joint ci ratio: 1.073447e-01	ci left: 3.929699e-04	ci right 4.378458e-04	k: 1332	n:3210000
Cons ci ratio: 5.701156e-04	ci left: 9.361515e-01	ci right 9.366857e-01	k: 3005905	n:3210000
KS ci ratio: 1.073447e-01	ci left: 3.929699e-04	ci right 4.378458e-04	k: 1332	n:3210000
ATXN1   3210000 perm   5222 sec   (615 perm/sec)   p_kst 4.149533e-04   p_cons 9.364190e-01   p_joint 4.149533e-04

Joint ci ratio: 1.071840e-01	ci left: 3.929584e-04	ci right 4.377616e-04	k: 1336	n:3220000
Cons ci ratio: 5.692418e-04	ci left: 9.361494e-01	ci right 9.366827e-01	k: 3015261	n:3220000
KS ci ratio: 1.071840e-01	ci left: 3.929584e-04	ci right 4.377616e-04	k: 1336	n:3220000
ATXN1   3220000 perm   5252 sec   (613 perm/sec)   p_kst 4.149068e-04   p_cons 9.364165e-01   p_joint 4.149068e-04

Joint ci ratio: 1.070640e-01	ci left: 3.926458e-04	ci right 4.373600e-04	k: 1339	n:3230000
Cons ci ratio: 5.683527e-04	ci left: 9.361513e-01	ci right 9.366838e-01	k: 3024630	n:3230000
KS ci ratio: 1.070640e-01	ci left: 3.926458e-04	ci right 4.373600e-04	k: 1339	n:3230000
ATXN1   3230000 perm   5283 sec   (611 perm/sec)   p_kst 4.145511e-04   p_cons 9.364180e-01   p_joint 4.145511e-04

Joint ci ratio: 1.069842e-01	ci left: 3.920346e-04	ci right 4.366439e-04	k: 1341	n:3240000
Cons ci ratio: 5.673899e-04	ci left: 9.361696e-01	ci right 9.367012e-01	k: 3034052	n:3240000
KS ci ratio: 1.069842e-01	ci left: 3.920346e-04	ci right 4.366439e-04	k: 1341	n:3240000
ATXN1   3240000 perm   5314 sec   (610 perm/sec)   p_kst 4.138889e-04   p_cons 9.364358e-01   p_joint 4.138889e-04

Joint ci ratio: 1.069046e-01	ci left: 3.914273e-04	ci right 4.359322e-04	k: 1343	n:3250000
Cons ci ratio: 5.664978e-04	ci left: 9.361739e-01	ci right 9.367047e-01	k: 3043429	n:3250000
KS ci ratio: 1.069046e-01	ci left: 3.914273e-04	ci right 4.359322e-04	k: 1343	n:3250000
ATXN1   3250000 perm   5345 sec   (608 perm/sec)   p_kst 4.132308e-04   p_cons 9.364397e-01   p_joint 4.132308e-04

Joint ci ratio: 1.068649e-01	ci left: 3.905251e-04	ci right 4.349100e-04	k: 1344	n:3260000
Cons ci ratio: 5.656231e-04	ci left: 9.361754e-01	ci right 9.367054e-01	k: 3052797	n:3260000
KS ci ratio: 1.068649e-01	ci left: 3.905251e-04	ci right 4.349100e-04	k: 1344	n:3260000
ATXN1   3260000 perm   5376 sec   (606 perm/sec)   p_kst 4.122699e-04   p_cons 9.364408e-01   p_joint 4.122699e-04

Joint ci ratio: 1.067064e-01	ci left: 3.905215e-04	ci right 4.348359e-04	k: 1348	n:3270000
Cons ci ratio: 5.647305e-04	ci left: 9.361815e-01	ci right 9.367107e-01	k: 3062180	n:3270000
KS ci ratio: 1.067064e-01	ci left: 3.905215e-04	ci right 4.348359e-04	k: 1348	n:3270000
ATXN1   3270000 perm   5408 sec   (605 perm/sec)   p_kst 4.122324e-04   p_cons 9.364465e-01   p_joint 4.122324e-04

Joint ci ratio: 1.065092e-01	ci left: 3.908146e-04	ci right 4.350752e-04	k: 1353	n:3280000
Cons ci ratio: 5.638119e-04	ci left: 9.361940e-01	ci right 9.367223e-01	k: 3071584	n:3280000
KS ci ratio: 1.065092e-01	ci left: 3.908146e-04	ci right 4.350752e-04	k: 1353	n:3280000
ATXN1   3280000 perm   5439 sec   (603 perm/sec)   p_kst 4.125000e-04   p_cons 9.364585e-01   p_joint 4.125000e-04

Joint ci ratio: 1.063130e-01	ci left: 3.911060e-04	ci right 4.353130e-04	k: 1358	n:3290000
Cons ci ratio: 5.629394e-04	ci left: 9.361976e-01	ci right 9.367251e-01	k: 3080959	n:3290000
KS ci ratio: 1.063130e-01	ci left: 3.911060e-04	ci right 4.353130e-04	k: 1358	n:3290000
ATXN1   3290000 perm   5471 sec   (601 perm/sec)   p_kst 4.127660e-04   p_cons 9.364617e-01   p_joint 4.127660e-04

Joint ci ratio: 1.060403e-01	ci left: 3.919857e-04	ci right 4.361713e-04	k: 1365	n:3300000
Cons ci ratio: 5.620524e-04	ci left: 9.362051e-01	ci right 9.367317e-01	k: 3090347	n:3300000
KS ci ratio: 1.060403e-01	ci left: 3.919857e-04	ci right 4.361713e-04	k: 1365	n:3300000
ATXN1   3300000 perm   5503 sec   (600 perm/sec)   p_kst 4.136364e-04   p_cons 9.364688e-01   p_joint 4.136364e-04

Joint ci ratio: 1.059627e-01	ci left: 3.913897e-04	ci right 4.354738e-04	k: 1367	n:3310000
Cons ci ratio: 5.611980e-04	ci left: 9.362065e-01	ci right 9.367323e-01	k: 3099715	n:3310000
KS ci ratio: 1.059627e-01	ci left: 3.913897e-04	ci right 4.354738e-04	k: 1367	n:3310000
ATXN1   3310000 perm   5535 sec   (598 perm/sec)   p_kst 4.129909e-04   p_cons 9.364698e-01   p_joint 4.129909e-04

Joint ci ratio: 1.057696e-01	ci left: 3.916770e-04	ci right 4.357081e-04	k: 1372	n:3320000
Cons ci ratio: 5.603758e-04	ci left: 9.362018e-01	ci right 9.367269e-01	k: 3109063	n:3320000
KS ci ratio: 1.057696e-01	ci left: 3.916770e-04	ci right 4.357081e-04	k: 1372	n:3320000
ATXN1   3320000 perm   5567 sec   (596 perm/sec)   p_kst 4.132530e-04   p_cons 9.364648e-01   p_joint 4.132530e-04

Joint ci ratio: 1.055775e-01	ci left: 3.919626e-04	ci right 4.359408e-04	k: 1377	n:3330000
Cons ci ratio: 5.595446e-04	ci left: 9.361999e-01	ci right 9.367242e-01	k: 3118420	n:3330000
KS ci ratio: 1.055775e-01	ci left: 3.919626e-04	ci right 4.359408e-04	k: 1377	n:3330000
ATXN1   3330000 perm   5598 sec   (595 perm/sec)   p_kst 4.135135e-04   p_cons 9.364625e-01   p_joint 4.135135e-04

Joint ci ratio: 1.053865e-01	ci left: 3.922465e-04	ci right 4.361721e-04	k: 1382	n:3340000
Cons ci ratio: 5.587100e-04	ci left: 9.361995e-01	ci right 9.367230e-01	k: 3127782	n:3340000
KS ci ratio: 1.053865e-01	ci left: 3.922465e-04	ci right 4.361721e-04	k: 1382	n:3340000
ATXN1   3340000 perm   5630 sec   (593 perm/sec)   p_kst 4.137725e-04   p_cons 9.364617e-01   p_joint 4.137725e-04

Joint ci ratio: 1.051965e-01	ci left: 3.925289e-04	ci right 4.364019e-04	k: 1387	n:3350000
Cons ci ratio: 5.578974e-04	ci left: 9.361953e-01	ci right 9.367180e-01	k: 3137131	n:3350000
KS ci ratio: 1.051965e-01	ci left: 3.925289e-04	ci right 4.364019e-04	k: 1387	n:3350000
ATXN1   3350000 perm   5662 sec   (592 perm/sec)   p_kst 4.140299e-04   p_cons 9.364570e-01   p_joint 4.140299e-04

Joint ci ratio: 1.051208e-01	ci left: 3.919402e-04	ci right 4.357140e-04	k: 1389	n:3360000
Cons ci ratio: 5.570729e-04	ci left: 9.361943e-01	ci right 9.367163e-01	k: 3146491	n:3360000
KS ci ratio: 1.051208e-01	ci left: 3.919402e-04	ci right 4.357140e-04	k: 1389	n:3360000
ATXN1   3360000 perm   5694 sec   (590 perm/sec)   p_kst 4.133929e-04   p_cons 9.364557e-01   p_joint 4.133929e-04

Joint ci ratio: 1.048571e-01	ci left: 3.927998e-04	ci right 4.365527e-04	k: 1396	n:3370000
Cons ci ratio: 5.562008e-04	ci left: 9.362043e-01	ci right 9.367255e-01	k: 3155888	n:3370000
KS ci ratio: 1.048571e-01	ci left: 3.927998e-04	ci right 4.365527e-04	k: 1396	n:3370000
ATXN1   3370000 perm   5726 sec   (589 perm/sec)   p_kst 4.142433e-04   p_cons 9.364653e-01   p_joint 4.142433e-04

Joint ci ratio: 1.047447e-01	ci left: 3.925020e-04	ci right 4.361720e-04	k: 1399	n:3380000
Cons ci ratio: 5.554225e-04	ci left: 9.361950e-01	ci right 9.367155e-01	k: 3165220	n:3380000
KS ci ratio: 1.047447e-01	ci left: 3.925020e-04	ci right 4.361720e-04	k: 1399	n:3380000
ATXN1   3380000 perm   5758 sec   (587 perm/sec)   p_kst 4.139053e-04   p_cons 9.364556e-01   p_joint 4.139053e-04

Joint ci ratio: 1.047448e-01	ci left: 3.913442e-04	ci right 4.348853e-04	k: 1399	n:3390000
Cons ci ratio: 5.546117e-04	ci left: 9.361935e-01	ci right 9.367131e-01	k: 3174578	n:3390000
KS ci ratio: 1.047448e-01	ci left: 3.913442e-04	ci right 4.348853e-04	k: 1399	n:3390000
ATXN1   3390000 perm   5791 sec   (585 perm/sec)   p_kst 4.126844e-04   p_cons 9.364537e-01   p_joint 4.126844e-04

Joint ci ratio: 1.047074e-01	ci left: 3.904796e-04	ci right 4.339081e-04	k: 1400	n:3400000
Cons ci ratio: 5.538318e-04	ci left: 9.361861e-01	ci right 9.367050e-01	k: 3183916	n:3400000
KS ci ratio: 1.047074e-01	ci left: 3.904796e-04	ci right 4.339081e-04	k: 1400	n:3400000
ATXN1   3400000 perm   5823 sec   (584 perm/sec)   p_kst 4.117647e-04   p_cons 9.364459e-01   p_joint 4.117647e-04

Joint ci ratio: 1.044468e-01	ci left: 3.913336e-04	ci right 4.347421e-04	k: 1407	n:3410000
Cons ci ratio: 5.530511e-04	ci left: 9.361795e-01	ci right 9.366977e-01	k: 3193257	n:3410000
KS ci ratio: 1.044468e-01	ci left: 3.913336e-04	ci right 4.347421e-04	k: 1407	n:3410000
ATXN1   3410000 perm   5855 sec   (582 perm/sec)   p_kst 4.126100e-04   p_cons 9.364390e-01   p_joint 4.126100e-04

Joint ci ratio: 1.044097e-01	ci left: 3.904741e-04	ci right 4.337709e-04	k: 1408	n:3420000
Cons ci ratio: 5.522411e-04	ci left: 9.361801e-01	ci right 9.366975e-01	k: 3202622	n:3420000
KS ci ratio: 1.044097e-01	ci left: 3.904741e-04	ci right 4.337709e-04	k: 1408	n:3420000
ATXN1   3420000 perm   5887 sec   (581 perm/sec)   p_kst 4.116959e-04   p_cons 9.364392e-01   p_joint 4.116959e-04

Joint ci ratio: 1.041881e-01	ci left: 3.910393e-04	ci right 4.343012e-04	k: 1414	n:3430000
Cons ci ratio: 5.514090e-04	ci left: 9.361862e-01	ci right 9.367029e-01	k: 3212006	n:3430000
KS ci ratio: 1.041881e-01	ci left: 3.910393e-04	ci right 4.343012e-04	k: 1414	n:3430000
ATXN1   3430000 perm   5920 sec   (579 perm/sec)   p_kst 4.122449e-04   p_cons 9.364449e-01   p_joint 4.122449e-04

Joint ci ratio: 1.039679e-01	ci left: 3.916014e-04	ci right 4.348282e-04	k: 1420	n:3440000
Cons ci ratio: 5.506156e-04	ci left: 9.361847e-01	ci right 9.367006e-01	k: 3221364	n:3440000
KS ci ratio: 1.039679e-01	ci left: 3.916014e-04	ci right 4.348282e-04	k: 1420	n:3440000
ATXN1   3440000 perm   5952 sec   (578 perm/sec)   p_kst 4.127907e-04   p_cons 9.364430e-01   p_joint 4.127907e-04

Joint ci ratio: 1.038583e-01	ci left: 3.913132e-04	ci right 4.344600e-04	k: 1423	n:3450000
Cons ci ratio: 5.498029e-04	ci left: 9.361882e-01	ci right 9.367033e-01	k: 3230739	n:3450000
KS ci ratio: 1.038583e-01	ci left: 3.913132e-04	ci right 4.344600e-04	k: 1423	n:3450000
ATXN1   3450000 perm   5985 sec   (576 perm/sec)   p_kst 4.124638e-04   p_cons 9.364461e-01   p_joint 4.124638e-04

Joint ci ratio: 1.038219e-01	ci left: 3.904638e-04	ci right 4.335009e-04	k: 1424	n:3460000
Cons ci ratio: 5.489697e-04	ci left: 9.361968e-01	ci right 9.367112e-01	k: 3240132	n:3460000
KS ci ratio: 1.038219e-01	ci left: 3.904638e-04	ci right 4.335009e-04	k: 1424	n:3460000
ATXN1   3460000 perm   6018 sec   (575 perm/sec)   p_kst 4.115607e-04   p_cons 9.364543e-01   p_joint 4.115607e-04

Joint ci ratio: 1.038220e-01	ci left: 3.893385e-04	ci right 4.322516e-04	k: 1424	n:3470000
Cons ci ratio: 5.481244e-04	ci left: 9.362088e-01	ci right 9.367224e-01	k: 3249537	n:3470000
KS ci ratio: 1.038220e-01	ci left: 3.893385e-04	ci right 4.322516e-04	k: 1424	n:3470000
ATXN1   3470000 perm   6051 sec   (573 perm/sec)   p_kst 4.103746e-04   p_cons 9.364660e-01   p_joint 4.103746e-04

Joint ci ratio: 1.037129e-01	ci left: 3.890594e-04	ci right 4.318940e-04	k: 1427	n:3480000
Cons ci ratio: 5.473425e-04	ci left: 9.362079e-01	ci right 9.367207e-01	k: 3258897	n:3480000
KS ci ratio: 1.037129e-01	ci left: 3.890594e-04	ci right 4.318940e-04	k: 1427	n:3480000
ATXN1   3480000 perm   6084 sec   (572 perm/sec)   p_kst 4.100575e-04   p_cons 9.364647e-01   p_joint 4.100575e-04

Joint ci ratio: 1.035679e-01	ci left: 3.890611e-04	ci right 4.318323e-04	k: 1431	n:3490000
Cons ci ratio: 5.465244e-04	ci left: 9.362155e-01	ci right 9.367276e-01	k: 3268287	n:3490000
KS ci ratio: 1.035679e-01	ci left: 3.890611e-04	ci right 4.318323e-04	k: 1431	n:3490000
ATXN1   3490000 perm   6117 sec   (571 perm/sec)   p_kst 4.100287e-04   p_cons 9.364719e-01   p_joint 4.100287e-04

Joint ci ratio: 1.035319e-01	ci left: 3.882278e-04	ci right 4.308916e-04	k: 1432	n:3500000
Cons ci ratio: 5.456877e-04	ci left: 9.362280e-01	ci right 9.367393e-01	k: 3277694	n:3500000
KS ci ratio: 1.035319e-01	ci left: 3.882278e-04	ci right 4.308916e-04	k: 1432	n:3500000
ATXN1   3500000 perm   6150 sec   (569 perm/sec)   p_kst 4.091429e-04   p_cons 9.364840e-01   p_joint 4.091429e-04

Joint ci ratio: 1.035319e-01	ci left: 3.871217e-04	ci right 4.296640e-04	k: 1432	n:3510000
Cons ci ratio: 5.448430e-04	ci left: 9.362430e-01	ci right 9.367535e-01	k: 3287110	n:3510000
KS ci ratio: 1.035319e-01	ci left: 3.871217e-04	ci right 4.296640e-04	k: 1432	n:3510000
ATXN1   3510000 perm   6183 sec   (568 perm/sec)   p_kst 4.079772e-04   p_cons 9.364986e-01   p_joint 4.079772e-04

Joint ci ratio: 1.034598e-01	ci left: 3.865754e-04	ci right 4.290262e-04	k: 1434	n:3520000
Cons ci ratio: 5.440542e-04	ci left: 9.362465e-01	ci right 9.367562e-01	k: 3296486	n:3520000
KS ci ratio: 1.034598e-01	ci left: 3.865754e-04	ci right 4.290262e-04	k: 1434	n:3520000
ATXN1   3520000 perm   6217 sec   (566 perm/sec)   p_kst 4.073864e-04   p_cons 9.365017e-01   p_joint 4.073864e-04

Joint ci ratio: 1.032800e-01	ci left: 3.868601e-04	ci right 4.292639e-04	k: 1439	n:3530000
Cons ci ratio: 5.432740e-04	ci left: 9.362488e-01	ci right 9.367579e-01	k: 3305858	n:3530000
KS ci ratio: 1.032800e-01	ci left: 3.868601e-04	ci right 4.292639e-04	k: 1439	n:3530000
ATXN1   3530000 perm   6250 sec   (565 perm/sec)   p_kst 4.076487e-04   p_cons 9.365037e-01   p_joint 4.076487e-04

Joint ci ratio: 1.030298e-01	ci left: 3.876936e-04	ci right 4.300797e-04	k: 1446	n:3540000
Cons ci ratio: 5.425049e-04	ci left: 9.362494e-01	ci right 9.367578e-01	k: 3315224	n:3540000
KS ci ratio: 1.030298e-01	ci left: 3.876936e-04	ci right 4.300797e-04	k: 1446	n:3540000
ATXN1   3540000 perm   6284 sec   (563 perm/sec)   p_kst 4.084746e-04   p_cons 9.365040e-01   p_joint 4.084746e-04

Joint ci ratio: 1.028169e-01	ci left: 3.882482e-04	ci right 4.306018e-04	k: 1452	n:3550000
Cons ci ratio: 5.418173e-04	ci left: 9.362328e-01	ci right 9.367405e-01	k: 3324529	n:3550000
KS ci ratio: 1.028169e-01	ci left: 3.882482e-04	ci right 4.306018e-04	k: 1452	n:3550000
ATXN1   3550000 perm   6318 sec   (562 perm/sec)   p_kst 4.090141e-04   p_cons 9.364870e-01   p_joint 4.090141e-04

Joint ci ratio: 1.027462e-01	ci left: 3.877050e-04	ci right 4.299685e-04	k: 1454	n:3560000
Cons ci ratio: 5.410940e-04	ci left: 9.362248e-01	ci right 9.367318e-01	k: 3333864	n:3560000
KS ci ratio: 1.027462e-01	ci left: 3.877050e-04	ci right 4.299685e-04	k: 1454	n:3560000
ATXN1   3560000 perm   6351 sec   (561 perm/sec)   p_kst 4.084270e-04   p_cons 9.364787e-01   p_joint 4.084270e-04

Joint ci ratio: 1.025701e-01	ci left: 3.879836e-04	ci right 4.302006e-04	k: 1459	n:3570000
Cons ci ratio: 5.403900e-04	ci left: 9.362131e-01	ci right 9.367195e-01	k: 3343186	n:3570000
KS ci ratio: 1.025701e-01	ci left: 3.879836e-04	ci right 4.302006e-04	k: 1459	n:3570000
ATXN1   3570000 perm   6385 sec   (559 perm/sec)   p_kst 4.086835e-04   p_cons 9.364667e-01   p_joint 4.086835e-04

Joint ci ratio: 1.023600e-01	ci left: 3.885328e-04	ci right 4.307178e-04	k: 1465	n:3580000
Cons ci ratio: 5.395989e-04	ci left: 9.362214e-01	ci right 9.367270e-01	k: 3352579	n:3580000
KS ci ratio: 1.023600e-01	ci left: 3.885328e-04	ci right 4.307178e-04	k: 1465	n:3580000
ATXN1   3580000 perm   6419 sec   (558 perm/sec)   p_kst 4.092179e-04   p_cons 9.364746e-01   p_joint 4.092179e-04

Joint ci ratio: 1.021858e-01	ci left: 3.888077e-04	ci right 4.309464e-04	k: 1470	n:3590000
Cons ci ratio: 5.388326e-04	ci left: 9.362249e-01	ci right 9.367298e-01	k: 3361955	n:3590000
KS ci ratio: 1.021858e-01	ci left: 3.888077e-04	ci right 4.309464e-04	k: 1470	n:3590000
ATXN1   3590000 perm   6453 sec   (556 perm/sec)   p_kst 4.094708e-04   p_cons 9.364777e-01   p_joint 4.094708e-04

Joint ci ratio: 1.020126e-01	ci left: 3.890811e-04	ci right 4.311737e-04	k: 1475	n:3600000
Cons ci ratio: 5.381437e-04	ci left: 9.362120e-01	ci right 9.367162e-01	k: 3371272	n:3600000
KS ci ratio: 1.020126e-01	ci left: 3.890811e-04	ci right 4.311737e-04	k: 1475	n:3600000
ATXN1   3600000 perm   6487 sec   (555 perm/sec)   p_kst 4.097222e-04   p_cons 9.364644e-01   p_joint 4.097222e-04

Joint ci ratio: 1.019781e-01	ci left: 3.882733e-04	ci right 4.302634e-04	k: 1476	n:3610000
Cons ci ratio: 5.373824e-04	ci left: 9.362158e-01	ci right 9.367193e-01	k: 3380649	n:3610000
KS ci ratio: 1.019781e-01	ci left: 3.882733e-04	ci right 4.302634e-04	k: 1476	n:3610000
ATXN1   3610000 perm   6522 sec   (554 perm/sec)   p_kst 4.088643e-04   p_cons 9.364679e-01   p_joint 4.088643e-04

Joint ci ratio: 1.018059e-01	ci left: 3.885467e-04	ci right 4.304912e-04	k: 1481	n:3620000
Cons ci ratio: 5.366293e-04	ci left: 9.362184e-01	ci right 9.367212e-01	k: 3390022	n:3620000
KS ci ratio: 1.018059e-01	ci left: 3.885467e-04	ci right 4.304912e-04	k: 1481	n:3620000
ATXN1   3620000 perm   6556 sec   (552 perm/sec)   p_kst 4.091160e-04   p_cons 9.364702e-01   p_joint 4.091160e-04

Joint ci ratio: 1.017716e-01	ci left: 3.877448e-04	ci right 4.295878e-04	k: 1482	n:3630000
Cons ci ratio: 5.358024e-04	ci left: 9.362382e-01	ci right 9.367402e-01	k: 3399457	n:3630000
KS ci ratio: 1.017716e-01	ci left: 3.877448e-04	ci right 4.295878e-04	k: 1482	n:3630000
ATXN1   3630000 perm   6591 sec   (551 perm/sec)   p_kst 4.082645e-04   p_cons 9.364895e-01   p_joint 4.082645e-04

Joint ci ratio: 1.016689e-01	ci left: 3.874828e-04	ci right 4.292528e-04	k: 1485	n:3640000
Cons ci ratio: 5.351337e-04	ci left: 9.362234e-01	ci right 9.367248e-01	k: 3408767	n:3640000
KS ci ratio: 1.016689e-01	ci left: 3.874828e-04	ci right 4.292528e-04	k: 1485	n:3640000
ATXN1   3640000 perm   6625 sec   (549 perm/sec)   p_kst 4.079670e-04   p_cons 9.364745e-01   p_joint 4.079670e-04

Joint ci ratio: 1.014302e-01	ci left: 3.882903e-04	ci right 4.300432e-04	k: 1492	n:3650000
Cons ci ratio: 5.344331e-04	ci left: 9.362164e-01	ci right 9.367171e-01	k: 3418105	n:3650000
KS ci ratio: 1.014302e-01	ci left: 3.882903e-04	ci right 4.300432e-04	k: 1492	n:3650000
ATXN1   3650000 perm   6659 sec   (548 perm/sec)   p_kst 4.087671e-04   p_cons 9.364671e-01   p_joint 4.087671e-04

Joint ci ratio: 1.013285e-01	ci left: 3.880283e-04	ci right 4.297087e-04	k: 1495	n:3660000
Cons ci ratio: 5.337033e-04	ci left: 9.362166e-01	ci right 9.367166e-01	k: 3427469	n:3660000
KS ci ratio: 1.013285e-01	ci left: 3.880283e-04	ci right 4.297087e-04	k: 1495	n:3660000
ATXN1   3660000 perm   6694 sec   (547 perm/sec)   p_kst 4.084699e-04   p_cons 9.364669e-01   p_joint 4.084699e-04

Joint ci ratio: 1.010922e-01	ci left: 3.888300e-04	ci right 4.304934e-04	k: 1502	n:3670000
Cons ci ratio: 5.330290e-04	ci left: 9.362050e-01	ci right 9.367044e-01	k: 3436790	n:3670000
KS ci ratio: 1.010922e-01	ci left: 3.888300e-04	ci right 4.304934e-04	k: 1502	n:3670000
ATXN1   3670000 perm   6728 sec   (545 perm/sec)   p_kst 4.092643e-04   p_cons 9.364550e-01   p_joint 4.092643e-04

Joint ci ratio: 1.009579e-01	ci left: 3.888329e-04	ci right 4.304380e-04	k: 1506	n:3680000
Cons ci ratio: 5.321967e-04	ci left: 9.362294e-01	ci right 9.367281e-01	k: 3446243	n:3680000
KS ci ratio: 1.009579e-01	ci left: 3.888329e-04	ci right 4.304380e-04	k: 1506	n:3680000
ATXN1   3680000 perm   6763 sec   (544 perm/sec)   p_kst 4.092391e-04   p_cons 9.364791e-01   p_joint 4.092391e-04

Joint ci ratio: 1.007909e-01	ci left: 3.891000e-04	ci right 4.306607e-04	k: 1511	n:3690000
Cons ci ratio: 5.315063e-04	ci left: 9.362227e-01	ci right 9.367207e-01	k: 3455582	n:3690000
KS ci ratio: 1.007909e-01	ci left: 3.891000e-04	ci right 4.306607e-04	k: 1511	n:3690000
ATXN1   3690000 perm   6798 sec   (543 perm/sec)   p_kst 4.094851e-04   p_cons 9.364721e-01   p_joint 4.094851e-04

Joint ci ratio: 1.007576e-01	ci left: 3.883118e-04	ci right 4.297738e-04	k: 1512	n:3700000
Cons ci ratio: 5.308138e-04	ci left: 9.362172e-01	ci right 9.367145e-01	k: 3464925	n:3700000
KS ci ratio: 1.007576e-01	ci left: 3.883118e-04	ci right 4.297738e-04	k: 1512	n:3700000
ATXN1   3700000 perm   6833 sec   (541 perm/sec)   p_kst 4.086486e-04   p_cons 9.364662e-01   p_joint 4.086486e-04

Joint ci ratio: 1.006579e-01	ci left: 3.880534e-04	ci right 4.294444e-04	k: 1515	n:3710000
Cons ci ratio: 5.300927e-04	ci left: 9.362187e-01	ci right 9.367154e-01	k: 3474294	n:3710000
KS ci ratio: 1.006579e-01	ci left: 3.880534e-04	ci right 4.294444e-04	k: 1515	n:3710000
ATXN1   3710000 perm   6869 sec   (540 perm/sec)   p_kst 4.083558e-04   p_cons 9.364674e-01   p_joint 4.083558e-04

Joint ci ratio: 1.005915e-01	ci left: 3.875344e-04	ci right 4.288411e-04	k: 1517	n:3720000
Cons ci ratio: 5.293722e-04	ci left: 9.362207e-01	ci right 9.367167e-01	k: 3483665	n:3720000
KS ci ratio: 1.005915e-01	ci left: 3.875344e-04	ci right 4.288411e-04	k: 1517	n:3720000
ATXN1   3720000 perm   6904 sec   (539 perm/sec)   p_kst 4.077957e-04   p_cons 9.364691e-01   p_joint 4.077957e-04

Joint ci ratio: 1.004593e-01	ci left: 3.875408e-04	ci right 4.287908e-04	k: 1521	n:3730000
Cons ci ratio: 5.286081e-04	ci left: 9.362332e-01	ci right 9.367285e-01	k: 3493075	n:3730000
KS ci ratio: 1.004593e-01	ci left: 3.875408e-04	ci right 4.287908e-04	k: 1521	n:3730000
ATXN1   3730000 perm   6939 sec   (538 perm/sec)   p_kst 4.077748e-04   p_cons 9.364812e-01   p_joint 4.077748e-04

Joint ci ratio: 1.003934e-01	ci left: 3.870260e-04	ci right 4.281925e-04	k: 1523	n:3740000
Cons ci ratio: 5.278402e-04	ci left: 9.362473e-01	ci right 9.367419e-01	k: 3502491	n:3740000
KS ci ratio: 1.003934e-01	ci left: 3.870260e-04	ci right 4.281925e-04	k: 1523	n:3740000
ATXN1   3740000 perm   6974 sec   (536 perm/sec)   p_kst 4.072193e-04   p_cons 9.364949e-01   p_joint 4.072193e-04

Joint ci ratio: 1.003276e-01	ci left: 3.865138e-04	ci right 4.275973e-04	k: 1525	n:3750000
Cons ci ratio: 5.271359e-04	ci left: 9.362476e-01	ci right 9.367416e-01	k: 3511856	n:3750000
KS ci ratio: 1.003276e-01	ci left: 3.865138e-04	ci right 4.275973e-04	k: 1525	n:3750000
ATXN1   3750000 perm   7010 sec   (535 perm/sec)   p_kst 4.066667e-04   p_cons 9.364949e-01   p_joint 4.066667e-04

Joint ci ratio: 1.001309e-01	ci left: 3.870416e-04	ci right 4.280958e-04	k: 1531	n:3760000
Cons ci ratio: 5.264308e-04	ci left: 9.362488e-01	ci right 9.367420e-01	k: 3521224	n:3760000
KS ci ratio: 1.001309e-01	ci left: 3.870416e-04	ci right 4.280958e-04	k: 1531	n:3760000
ATXN1   3760000 perm   7045 sec   (534 perm/sec)   p_kst 4.071809e-04   p_cons 9.364957e-01   p_joint 4.071809e-04

Joint ci ratio: 9.996789e-02	ci left: 3.873081e-04	ci right 4.283197e-04	k: 1536	n:3770000
Cons ci ratio: 5.257415e-04	ci left: 9.362470e-01	ci right 9.367396e-01	k: 3530581	n:3770000
KS ci ratio: 9.996789e-02	ci left: 3.873081e-04	ci right 4.283197e-04	k: 1536	n:3770000
ATXN1   3770000 perm   7081 sec   (532 perm/sec)   p_kst 4.074271e-04   p_cons 9.364936e-01   p_joint 4.074271e-04

Outputting figure to mutsig2_images.part000000000014/ATXN1.2_2456_3770000_0.00040743_0.93649_0.00040743.png
                gene_name: ATXN1
               theta_stop: 0.100 
                    nperm: 3770000 
                     p_ks: 0.00041 
        ci_ks_bounds_left: 0.00039 
       ci_ks_bounds_right: 0.00043 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.00041 
     ci_joint_bounds_left: 0.00039 
    ci_joint_bounds_right: 0.00043 

Current progress: 75 percent done.
ATXN7L3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.119438e-02	ci left: 7.654710e-01	ci right 7.819693e-01	k: 7738	n:10000
KS ci ratio: 5.337388e-02	ci left: 3.409444e-01	ci right 3.597428e-01	k: 3503	n:10000
ATXN7L3   10000 perm   2 sec   (6640 perm/sec)   p_kst 3.503000e-01   p_cons 7.738000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000014/ATXN7L3.2_1113_10000_0.3503_0.7738_1.png
                gene_name: ATXN7L3
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
AVPR1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.923265e-02	ci left: 7.981111e-01	ci right 8.137103e-01	k: 8060	n:10000
Cons ci ratio: 6.241010e-02	ci left: 2.739874e-01	ci right 2.917393e-01	k: 2828	n:10000
KS ci ratio: 3.270107e-02	ci left: 5.798839e-01	ci right 5.992639e-01	k: 5896	n:10000
AVPR1B   10000 perm   2 sec   (6655 perm/sec)   p_kst 5.896000e-01   p_cons 2.828000e-01   p_joint 8.060000e-01

Outputting figure to mutsig2_images.part000000000014/AVPR1B.2_1283_10000_0.5896_0.2828_0.806.png
                gene_name: AVPR1B
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 78 percent done.
AXIN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.901577e-02	ci left: 6.365358e-01	ci right 6.553791e-01	k: 6460	n:10000
Cons ci ratio: 5.379860e-02	ci left: 3.373679e-01	ci right 3.561214e-01	k: 3467	n:10000
KS ci ratio: 1.043462e-02	ci left: 9.288527e-01	ci right 9.386928e-01	k: 9339	n:10000
AXIN2   10000 perm   2 sec   (5791 perm/sec)   p_kst 9.339000e-01   p_cons 3.467000e-01   p_joint 6.460000e-01

Outputting figure to mutsig2_images.part000000000014/AXIN2.2_2572_10000_0.9339_0.3467_0.646.png
                gene_name: AXIN2
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 80 percent done.
AZI2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.481289e-02	ci left: 4.236581e-01	ci right 4.431807e-01	k: 4334	n:10000
Cons ci ratio: 7.098191e-02	ci left: 2.253355e-01	ci right 2.420199e-01	k: 2336	n:10000
KS ci ratio: 5.422880e-02	ci left: 3.337920e-01	ci right 3.524995e-01	k: 3431	n:10000
AZI2   10000 perm   2 sec   (6619 perm/sec)   p_kst 3.431000e-01   p_cons 2.336000e-01   p_joint 4.334000e-01

Outputting figure to mutsig2_images.part000000000014/AZI2.2_1296_10000_0.3431_0.2336_0.4334.png
                gene_name: AZI2
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 82 percent done.
AZU1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.229455e-02	ci left: 4.521908e-01	ci right 4.718314e-01	k: 4620	n:10000
Cons ci ratio: 1.603451e-02	ci left: 8.496789e-01	ci right 8.635127e-01	k: 8567	n:10000
KS ci ratio: 8.664465e-02	ci left: 1.624881e-01	ci right 1.773047e-01	k: 1698	n:10000
AZU1   10000 perm   1 sec   (7196 perm/sec)   p_kst 1.698000e-01   p_cons 8.567000e-01   p_joint 4.620000e-01

Outputting figure to mutsig2_images.part000000000014/AZU1.2_776_10000_0.1698_0.8567_0.462.png
                gene_name: AZU1
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 84 percent done.
B2M
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.751436e-01	ci left: 4.350916e-02	ci right 5.195681e-02	k: 476	n:10000
Cons ci ratio: 2.526781e-01	ci left: 2.052656e-02	ci right 2.655540e-02	k: 234	n:10000
KS ci ratio: 2.035729e-02	ci left: 7.794504e-01	ci right 7.955817e-01	k: 7876	n:10000
B2M   10000 perm   1 sec   (7320 perm/sec)   p_kst 7.876000e-01   p_cons 2.340000e-02   p_joint 4.760000e-02

Joint ci ratio: 1.389877e-01	ci left: 3.558584e-02	ci right 4.094947e-02	k: 764	n:20000
Cons ci ratio: 1.804519e-01	ci left: 2.096705e-02	ci right 2.517319e-02	k: 460	n:20000
KS ci ratio: 1.431931e-02	ci left: 7.836318e-01	ci right 7.949839e-01	k: 15787	n:20000
B2M   20000 perm   3 sec   (6310 perm/sec)   p_kst 7.893500e-01   p_cons 2.300000e-02   p_joint 3.820000e-02

Joint ci ratio: 1.031441e-01	ci left: 4.355936e-02	ci right 4.832908e-02	k: 1377	n:30000
Cons ci ratio: 1.467433e-01	ci left: 2.152616e-02	ci right 2.496703e-02	k: 696	n:30000
KS ci ratio: 1.174843e-02	ci left: 7.830617e-01	ci right 7.923492e-01	k: 23632	n:30000
B2M   30000 perm   5 sec   (5925 perm/sec)   p_kst 7.877333e-01   p_cons 2.320000e-02   p_joint 4.590000e-02

Joint ci ratio: 9.919391e-02	ci left: 3.570814e-02	ci right 3.945938e-02	k: 1502	n:40000
Cons ci ratio: 1.273179e-01	ci left: 2.167428e-02	ci right 2.464550e-02	k: 925	n:40000
KS ci ratio: 1.015794e-02	ci left: 7.842381e-01	ci right 7.922700e-01	k: 31531	n:40000
B2M   40000 perm   7 sec   (5641 perm/sec)   p_kst 7.882750e-01   p_cons 2.312500e-02   p_joint 3.755000e-02

Joint ci ratio: 8.059067e-02	ci left: 4.335631e-02	ci right 4.701673e-02	k: 2258	n:50000
Cons ci ratio: 1.154435e-01	ci left: 2.123730e-02	ci right 2.385853e-02	k: 1126	n:50000
KS ci ratio: 9.034748e-03	ci left: 7.865439e-01	ci right 7.937024e-01	k: 39507	n:50000
B2M   50000 perm   9 sec   (5434 perm/sec)   p_kst 7.901400e-01   p_cons 2.252000e-02   p_joint 4.516000e-02

Joint ci ratio: 7.328349e-02	ci left: 4.384618e-02	ci right 4.719796e-02	k: 2730	n:60000
Cons ci ratio: 1.048078e-01	ci left: 2.158796e-02	ci right 2.399184e-02	k: 1366	n:60000
KS ci ratio: 8.229064e-03	ci left: 7.876069e-01	ci right 7.941316e-01	k: 47453	n:60000
B2M   60000 perm   11 sec   (5284 perm/sec)   p_kst 7.908833e-01   p_cons 2.276667e-02   p_joint 4.550000e-02

Joint ci ratio: 6.788275e-02	ci left: 4.392575e-02	ci right 4.702635e-02	k: 3182	n:70000
Cons ci ratio: 9.690386e-02	ci left: 2.173481e-02	ci right 2.396213e-02	k: 1598	n:70000
KS ci ratio: 7.645874e-03	ci left: 7.866620e-01	ci right 7.927140e-01	k: 55279	n:70000
B2M   70000 perm   14 sec   (5145 perm/sec)   p_kst 7.897000e-01   p_cons 2.282857e-02   p_joint 4.545714e-02

Outputting figure to mutsig2_images.part000000000014/B2M.2_372_70000_0.7897_0.022829_0.045457.png
                gene_name: B2M
               theta_stop: 0.097 
                    nperm: 70000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.023 
      ci_cons_bounds_left: 0.022 
     ci_cons_bounds_right: 0.024 
                  p_joint: 0.045 
     ci_joint_bounds_left: 0.044 
    ci_joint_bounds_right: 0.047 

Current progress: 86 percent done.
B3GALNT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.983313e-02	ci left: 7.881691e-01	ci right 8.040580e-01	k: 7962	n:10000
Cons ci ratio: 8.818083e-02	ci left: 1.576751e-01	ci right 1.723206e-01	k: 1649	n:10000
KS ci ratio: 2.109753e-02	ci left: 7.670911e-01	ci right 7.835482e-01	k: 7754	n:10000
B3GALNT2   10000 perm   2 sec   (5876 perm/sec)   p_kst 7.754000e-01   p_cons 1.649000e-01   p_joint 7.962000e-01

Outputting figure to mutsig2_images.part000000000014/B3GALNT2.2_1551_10000_0.7754_0.1649_0.7962.png
                gene_name: B3GALNT2
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 88 percent done.
B3GAT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.137492e-02	ci left: 9.169823e-01	ci right 9.275701e-01	k: 9224	n:10000
Cons ci ratio: 2.825866e-02	ci left: 6.486074e-01	ci right 6.673005e-01	k: 6580	n:10000
KS ci ratio: 6.233328e-02	ci left: 2.744825e-01	ci right 2.922438e-01	k: 2833	n:10000
B3GAT1   10000 perm   1 sec   (7123 perm/sec)   p_kst 2.833000e-01   p_cons 6.580000e-01   p_joint 9.224000e-01

Outputting figure to mutsig2_images.part000000000014/B3GAT1.2_1021_10000_0.2833_0.658_0.9224.png
                gene_name: B3GAT1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 90 percent done.
B3GAT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.566060e-02	ci left: 8.554928e-01	ci right 8.690954e-01	k: 8624	n:10000
KS ci ratio: 2.116412e-02	ci left: 7.659773e-01	ci right 7.824627e-01	k: 7743	n:10000
B3GAT2   10000 perm   1 sec   (6819 perm/sec)   p_kst 7.743000e-01   p_cons 8.624000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000014/B3GAT2.2_988_10000_0.7743_0.8624_1.png
                gene_name: B3GAT2
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
B4GALNT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.935118e-02	ci left: 4.881520e-01	ci right 5.078491e-01	k: 4980	n:10000
Cons ci ratio: 1.754707e-02	ci left: 8.256448e-01	ci right 8.403607e-01	k: 8331	n:10000
KS ci ratio: 9.780389e-02	ci left: 1.315900e-01	ci right 1.452214e-01	k: 1383	n:10000
B4GALNT2   10000 perm   2 sec   (6297 perm/sec)   p_kst 1.383000e-01   p_cons 8.331000e-01   p_joint 4.980000e-01

Outputting figure to mutsig2_images.part000000000014/B4GALNT2.2_1763_10000_0.1383_0.8331_0.498.png
                gene_name: B4GALNT2
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 94 percent done.
B4GALT5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.344429e-02	ci left: 3.403483e-01	ci right 3.591393e-01	k: 3497	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
B4GALT5   10000 perm   2 sec   (6654 perm/sec)   p_kst 1   p_cons 3.497000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000014/B4GALT5.2_1203_10000_1_0.3497_1.png
                gene_name: B4GALT5
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
B4GALT6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.089155e-02	ci left: 9.231709e-01	ci right 9.333780e-01	k: 9284	n:10000
Cons ci ratio: 3.822641e-02	ci left: 5.026508e-01	ci right 5.223419e-01	k: 5125	n:10000
KS ci ratio: 1.620383e-02	ci left: 8.470282e-01	ci right 8.609649e-01	k: 8541	n:10000
B4GALT6   10000 perm   1 sec   (6814 perm/sec)   p_kst 8.541000e-01   p_cons 5.125000e-01   p_joint 9.284000e-01

Outputting figure to mutsig2_images.part000000000014/B4GALT6.2_1185_10000_0.8541_0.5125_0.9284.png
                gene_name: B4GALT6
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 98 percent done.
BAAT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.831423e-02	ci left: 2.391649e-01	ci right 2.561823e-01	k: 2476	n:10000
Cons ci ratio: 5.642880e-02	ci left: 3.162190e-01	ci right 3.346828e-01	k: 3254	n:10000
KS ci ratio: 7.070558e-02	ci left: 2.267179e-01	ci right 2.434367e-01	k: 2350	n:10000
BAAT   10000 perm   2 sec   (6588 perm/sec)   p_kst 2.350000e-01   p_cons 3.254000e-01   p_joint 2.476000e-01

Outputting figure to mutsig2_images.part000000000014/BAAT.2_1269_10000_0.235_0.3254_0.2476.png
                gene_name: BAAT
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000014
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 14 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1417>
Subject: Job 8003869: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1417>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000015> was used as the working directory.
Started at Sun Nov 11 15:03:44 2012
Results reported at Sun Nov 11 15:21:21 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000015.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000015.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 15  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000015.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1277.48 sec.
    Max Memory :      4793 MB
    Max Swap   :      7061 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
15
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 15
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 15: processing genes 1268 - 1357
Calculating significance of each gene.
Using projection method.
1268	BACE1	1
1269	BACE2	4.625934e-01
1270	BACH1	8.820606e-01
1271	BACH2	3.531260e-01
1272	BAD	1
1273	BAG1	7.767570e-01
1274	BAG2	1
1275	BAG3	1
1276	BAG4	7.172649e-01
1277	BAG5	4.154315e-01
1278	BAGE	1
1279	BAGE2	2.992742e-03
1280	BAGE3	1
1281	BAGE4	1
1282	BAGE5	1
1283	BAHCC1	7.190598e-01
1284	BAHD1	9.593352e-01
1285	BAI1	3.305784e-01
1286	BAI2	5.768209e-01
1287	BAI3	1.338146e-01
1288	BAIAP2	5.875917e-01
1289	BAIAP2L1	6.317048e-01
1290	BAIAP2L2	7.663376e-01
1291	BAIAP3	5.108483e-02
1292	BAK1	4.194132e-01
1293	BAMBI	2.973966e-01
1294	BANF1	1
1295	BANF2	1
1296	BANK1	1.213751e-02
1297	BANP	5.159532e-01
1298	BAP1	8.476160e-01
1299	BARD1	3.514973e-01
1300	BARHL1	1
1301	BARHL2	1
1302	BARX1	1
1303	BARX2	3.910656e-01
1304	BASP1	1
1305	BAT1	8.414684e-01
1306	BAT2	1
1307	BAT2L1	1
1308	BAT2L2	9.940858e-01
1309	BAT3	9.932387e-01
1310	BAT4	2.905065e-01
1311	BAT5	1
1312	BATF	1
1313	BATF2	1
1314	BATF3	1
1315	BAX	3.775439e-01
1316	BAZ1A	9.017429e-01
1317	BAZ1B	9.936749e-01
1318	BAZ2A	9.719173e-01
1319	BAZ2B	9.987999e-01
1320	BBOX1	5.211863e-01
1321	BBS1	8.350561e-01
1322	BBS10	8.337616e-01
1323	BBS12	6.097166e-01
1324	BBS2	8.156815e-01
1325	BBS4	8.407936e-01
1326	BBS5	1
1327	BBS7	2.047147e-01
1328	BBS9	5.873915e-01
1329	BBX	9.400933e-01
1330	BCAM	3.840061e-01
1331	BCAN	9.684957e-01
1332	BCAP29	3.457839e-01
1333	BCAP31	4.433065e-01
1334	BCAR1	3.418807e-01
1335	BCAR3	4.067150e-01
1336	BCAS1	1
1337	BCAS2	4.994479e-01
1338	BCAS3	5.151454e-01
1339	BCAS4	1
1340	BCAT1	6.926416e-01
1341	BCAT2	3.971398e-01
1342	BCCIP	3.272993e-01
1343	BCDIN3D	4.506152e-01
1344	BCHE	1.991300e-01
1345	BCKDHA	1
1346	BCKDHB	4.435720e-01
1347	BCKDK	1
1348	BCL10	1
1349	BCL11A	1
1350	BCL11B	1
1351	BCL2	1
1352	BCL2A1	1.060985e-01
1353	BCL2L1	4.611197e-01
1354	BCL2L10	1
1355	BCL2L11	1
1356	BCL2L12	1
1357	BCL2L13	9.065524e-01
Done

Running MutSig 2:
Scatter job 15: processing genes 1268 - 1357
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
BAI3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.999969e-02	ci left: 6.210534e-01	ci right 6.400704e-01	k: 6306	n:10000
Cons ci ratio: 2.391782e-02	ci left: 7.198696e-01	ci right 7.373970e-01	k: 7287	n:10000
KS ci ratio: 4.044451e-02	ci left: 4.744608e-01	ci right 4.941484e-01	k: 4843	n:10000
BAI3   10000 perm   3 sec   (3080 perm/sec)   p_kst 4.843000e-01   p_cons 7.287000e-01   p_joint 6.306000e-01

Outputting figure to mutsig2_images.part000000000015/BAI3.25_4689_10000_0.4843_0.7287_0.6306.png
                gene_name: BAI3
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 2 percent done.
BAZ2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.922212e-02	ci left: 3.784330e-01	ci right 3.976323e-01	k: 3880	n:10000
Cons ci ratio: 1.987588e-02	ci left: 7.874592e-01	ci right 8.033683e-01	k: 7955	n:10000
KS ci ratio: 7.198729e-02	ci left: 2.203995e-01	ci right 2.369589e-01	k: 2286	n:10000
BAZ2B   10000 perm   3 sec   (3142 perm/sec)   p_kst 2.286000e-01   p_cons 7.955000e-01   p_joint 3.880000e-01

Outputting figure to mutsig2_images.part000000000015/BAZ2B.13_6647_10000_0.2286_0.7955_0.388.png
                gene_name: BAZ2B
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 5 percent done.
BCHE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.780800e-02	ci left: 6.558534e-01	ci right 6.744503e-01	k: 6652	n:10000
KS ci ratio: 1.008422e-02	ci left: 9.330945e-01	ci right 9.426485e-01	k: 9380	n:10000
BCHE   10000 perm   2 sec   (5186 perm/sec)   p_kst 9.380000e-01   p_cons 6.652000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000015/BCHE.13_1821_10000_0.938_0.6652_1.png
                gene_name: BCHE
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 7 percent done.
BAI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.954840e-02	ci left: 4.856531e-01	ci right 5.053495e-01	k: 4955	n:10000
Cons ci ratio: 3.827232e-02	ci left: 5.020507e-01	ci right 5.217424e-01	k: 5119	n:10000
KS ci ratio: 5.024244e-02	ci left: 3.687815e-01	ci right 3.878894e-01	k: 3783	n:10000
BAI1   10000 perm   3 sec   (3886 perm/sec)   p_kst 3.783000e-01   p_cons 5.119000e-01   p_joint 4.955000e-01

Outputting figure to mutsig2_images.part000000000015/BAI1.11_4875_10000_0.3783_0.5119_0.4955.png
                gene_name: BAI1
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 9 percent done.
BAT2L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.165271e-02	ci left: 1.795967e-01	ci right 1.949860e-01	k: 1872	n:10000
Cons ci ratio: 8.249378e-02	ci left: 1.765467e-01	ci right 1.918378e-01	k: 1841	n:10000
KS ci ratio: 5.139383e-02	ci left: 3.582391e-01	ci right 3.772380e-01	k: 3677	n:10000
BAT2L2   10000 perm   3 sec   (2891 perm/sec)   p_kst 3.677000e-01   p_cons 1.841000e-01   p_joint 1.872000e-01

Outputting figure to mutsig2_images.part000000000015/BAT2L2.10_8478_10000_0.3677_0.1841_0.1872.png
                gene_name: BAT2L2
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 11 percent done.
BAZ1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.561992e-02	ci left: 2.542921e-01	ci right 2.716462e-01	k: 2629	n:10000
Cons ci ratio: 1.241134e-01	ci left: 8.504395e-02	ci right 9.639578e-02	k: 906	n:10000
KS ci ratio: 3.282282e-02	ci left: 5.780780e-01	ci right 5.974708e-01	k: 5878	n:10000
BAZ1A   10000 perm   3 sec   (3791 perm/sec)   p_kst 5.878000e-01   p_cons 9.060000e-02   p_joint 2.629000e-01

Joint ci ratio: 4.198056e-02	ci left: 2.971817e-01	ci right 3.099755e-01	k: 6071	n:20000
Cons ci ratio: 8.653582e-02	ci left: 8.900926e-02	ci right 9.710950e-02	k: 1860	n:20000
KS ci ratio: 2.259321e-02	ci left: 5.939735e-01	ci right 6.075972e-01	k: 12016	n:20000
BAZ1A   20000 perm   6 sec   (3496 perm/sec)   p_kst 6.008000e-01   p_cons 9.300000e-02   p_joint 3.035500e-01

Outputting figure to mutsig2_images.part000000000015/BAZ1A.10_4775_20000_0.6008_0.093_0.30355.png
                gene_name: BAZ1A
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.093 
      ci_cons_bounds_left: 0.089 
     ci_cons_bounds_right: 0.097 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 14 percent done.
BAIAP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.419618e-02	ci left: 5.580221e-01	ci right 5.775384e-01	k: 5678	n:10000
Cons ci ratio: 7.977151e-02	ci left: 1.866835e-01	ci right 2.022949e-01	k: 1944	n:10000
KS ci ratio: 1.340175e-02	ci left: 8.892362e-01	ci right 9.013324e-01	k: 8954	n:10000
BAIAP3   10000 perm   2 sec   (4085 perm/sec)   p_kst 8.954000e-01   p_cons 1.944000e-01   p_joint 5.678000e-01

Outputting figure to mutsig2_images.part000000000015/BAIAP3.9_3700_10000_0.8954_0.1944_0.5678.png
                gene_name: BAIAP3
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 16 percent done.
BANK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.336069e-02	ci left: 5.701540e-01	ci right 5.895994e-01	k: 5799	n:10000
Cons ci ratio: 7.555118e-02	ci left: 2.040239e-01	ci right 2.201442e-01	k: 2120	n:10000
KS ci ratio: 1.210517e-02	ci left: 9.073051e-01	ci right 9.184530e-01	k: 9130	n:10000
BANK1   10000 perm   2 sec   (5075 perm/sec)   p_kst 9.130000e-01   p_cons 2.120000e-01   p_joint 5.799000e-01

Outputting figure to mutsig2_images.part000000000015/BANK1.8_2422_10000_0.913_0.212_0.5799.png
                gene_name: BANK1
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 18 percent done.
BCAN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.805087e-02	ci left: 5.049514e-01	ci right 5.246400e-01	k: 5148	n:10000
Cons ci ratio: 5.372743e-02	ci left: 3.379640e-01	ci right 3.567250e-01	k: 3473	n:10000
KS ci ratio: 4.476731e-02	ci left: 4.241566e-01	ci right 4.436819e-01	k: 4339	n:10000
BCAN   10000 perm   2 sec   (4935 perm/sec)   p_kst 4.339000e-01   p_cons 3.473000e-01   p_joint 5.148000e-01

Outputting figure to mutsig2_images.part000000000015/BCAN.8_2862_10000_0.4339_0.3473_0.5148.png
                gene_name: BCAN
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 20 percent done.
BCL11A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.305278e-01	ci left: 2.485465e-02	ci right 3.142409e-02	k: 280	n:10000
Cons ci ratio: 3.900160e-01	ci left: 8.053309e-03	ci right 1.203990e-02	k: 99	n:10000
KS ci ratio: 4.782131e-02	ci left: 3.921708e-01	ci right 4.114864e-01	k: 4018	n:10000
BCL11A   10000 perm   2 sec   (4761 perm/sec)   p_kst 4.018000e-01   p_cons 9.900000e-03   p_joint 2.800000e-02

Joint ci ratio: 1.833216e-01	ci left: 2.029828e-02	ci right 2.444220e-02	k: 446	n:20000
Cons ci ratio: 2.703794e-01	ci left: 8.993904e-03	ci right 1.185112e-02	k: 207	n:20000
KS ci ratio: 3.422587e-02	ci left: 3.892624e-01	ci right 4.028678e-01	k: 7921	n:20000
BCL11A   20000 perm   5 sec   (4285 perm/sec)   p_kst 3.960500e-01   p_cons 1.035000e-02   p_joint 2.230000e-02

Joint ci ratio: 1.291342e-01	ci left: 2.787259e-02	ci right 3.175251e-02	k: 893	n:30000
Cons ci ratio: 2.211240e-01	ci left: 9.219947e-03	ci right 1.154301e-02	k: 310	n:30000
KS ci ratio: 2.787333e-02	ci left: 3.917562e-01	ci right 4.028637e-01	k: 11919	n:30000
BCL11A   30000 perm   7 sec   (4089 perm/sec)   p_kst 3.973000e-01   p_cons 1.033333e-02   p_joint 2.976667e-02

Joint ci ratio: 1.090369e-01	ci left: 2.959084e-02	ci right 3.302765e-02	k: 1251	n:40000
Cons ci ratio: 1.925979e-01	ci left: 9.262315e-03	ci right 1.125974e-02	k: 409	n:40000
KS ci ratio: 2.422023e-02	ci left: 3.909031e-01	ci right 4.005120e-01	k: 15828	n:40000
BCL11A   40000 perm   10 sec   (3967 perm/sec)   p_kst 3.957000e-01   p_cons 1.022500e-02   p_joint 3.127500e-02

Joint ci ratio: 1.105260e-01	ci left: 2.318206e-02	ci right 2.591353e-02	k: 1226	n:50000
Cons ci ratio: 1.737267e-01	ci left: 9.203821e-03	ci right 1.097375e-02	k: 503	n:50000
KS ci ratio: 2.260324e-02	ci left: 3.713326e-01	ci right 3.798419e-01	k: 18779	n:50000
BCL11A   50000 perm   13 sec   (3874 perm/sec)   p_kst 3.755800e-01   p_cons 1.006000e-02   p_joint 2.452000e-02

Joint ci ratio: 1.021258e-01	ci left: 2.274135e-02	ci right 2.520499e-02	k: 1437	n:60000
Cons ci ratio: 1.586964e-01	ci left: 9.267325e-03	ci right 1.088059e-02	k: 603	n:60000
KS ci ratio: 2.066613e-02	ci left: 3.709744e-01	ci right 3.787377e-01	k: 22491	n:60000
BCL11A   60000 perm   16 sec   (3795 perm/sec)   p_kst 3.748500e-01   p_cons 1.005000e-02   p_joint 2.395000e-02

Joint ci ratio: 8.874951e-02	ci left: 2.590962e-02	ci right 2.832979e-02	k: 1897	n:70000
Cons ci ratio: 1.471003e-01	ci left: 9.303668e-03	ci right 1.079451e-02	k: 702	n:70000
KS ci ratio: 1.912068e-02	ci left: 3.715686e-01	ci right 3.787561e-01	k: 26261	n:70000
BCL11A   70000 perm   19 sec   (3719 perm/sec)   p_kst 3.751571e-01   p_cons 1.002857e-02   p_joint 2.710000e-02

Joint ci ratio: 7.817109e-02	ci left: 2.928242e-02	ci right 3.167679e-02	k: 2437	n:80000
Cons ci ratio: 1.371204e-01	ci left: 9.418678e-03	ci right 1.081719e-02	k: 808	n:80000
KS ci ratio: 1.788705e-02	ci left: 3.717684e-01	ci right 3.784907e-01	k: 30010	n:80000
BCL11A   80000 perm   22 sec   (3653 perm/sec)   p_kst 3.751250e-01   p_cons 1.010000e-02   p_joint 3.046250e-02

Joint ci ratio: 8.095736e-02	ci left: 2.436006e-02	ci right 2.642624e-02	k: 2284	n:90000
Cons ci ratio: 1.292157e-01	ci left: 9.467771e-03	ci right 1.078631e-02	k: 910	n:90000
KS ci ratio: 1.686861e-02	ci left: 3.718356e-01	ci right 3.781724e-01	k: 33750	n:90000
BCL11A   90000 perm   25 sec   (3595 perm/sec)   p_kst 3.750000e-01   p_cons 1.011111e-02   p_joint 2.537778e-02

Joint ci ratio: 8.063049e-02	ci left: 2.215818e-02	ci right 2.402962e-02	k: 2308	n:100000
Cons ci ratio: 1.230909e-01	ci left: 9.421640e-03	ci right 1.066703e-02	k: 1003	n:100000
KS ci ratio: 1.595430e-02	ci left: 3.734258e-01	ci right 3.794414e-01	k: 37643	n:100000
BCL11A   100000 perm   28 sec   (3539 perm/sec)   p_kst 3.764300e-01   p_cons 1.003000e-02   p_joint 2.308000e-02

Joint ci ratio: 6.820399e-02	ci left: 2.815927e-02	ci right 3.015656e-02	k: 3206	n:110000
Cons ci ratio: 1.172768e-01	ci left: 9.464544e-03	ci right 1.065241e-02	k: 1105	n:110000
KS ci ratio: 1.518194e-02	ci left: 3.744888e-01	ci right 3.802268e-01	k: 41509	n:110000
BCL11A   110000 perm   32 sec   (3483 perm/sec)   p_kst 3.773545e-01   p_cons 1.004545e-02   p_joint 2.914545e-02

Joint ci ratio: 6.963969e-02	ci left: 2.482839e-02	ci right 2.662796e-02	k: 3086	n:120000
Cons ci ratio: 1.109243e-01	ci left: 9.728335e-03	ci right 1.087885e-02	k: 1235	n:120000
KS ci ratio: 1.454196e-02	ci left: 3.744066e-01	ci right 3.798994e-01	k: 45258	n:120000
BCL11A   120000 perm   35 sec   (3429 perm/sec)   p_kst 3.771500e-01   p_cons 1.029167e-02   p_joint 2.571667e-02

Joint ci ratio: 6.712689e-02	ci left: 2.470280e-02	ci right 2.642614e-02	k: 3322	n:130000
Cons ci ratio: 1.068958e-01	ci left: 9.690856e-03	ci right 1.079269e-02	k: 1330	n:130000
KS ci ratio: 1.395011e-02	ci left: 3.752325e-01	ci right 3.805114e-01	k: 49123	n:130000
BCL11A   130000 perm   38 sec   (3378 perm/sec)   p_kst 3.778692e-01   p_cons 1.023077e-02   p_joint 2.555385e-02

Joint ci ratio: 6.388905e-02	ci left: 2.534846e-02	ci right 2.702839e-02	k: 3665	n:140000
Cons ci ratio: 1.029851e-01	ci left: 9.715065e-03	ci right 1.077680e-02	k: 1433	n:140000
KS ci ratio: 1.345467e-02	ci left: 3.749098e-01	ci right 3.799953e-01	k: 52843	n:140000
BCL11A   140000 perm   42 sec   (3327 perm/sec)   p_kst 3.774500e-01   p_cons 1.023571e-02   p_joint 2.617857e-02

Joint ci ratio: 6.058285e-02	ci left: 2.633008e-02	ci right 2.798160e-02	k: 4072	n:150000
Cons ci ratio: 9.960541e-02	ci left: 9.710673e-03	ci right 1.073506e-02	k: 1532	n:150000
KS ci ratio: 1.300464e-02	ci left: 3.747729e-01	ci right 3.796852e-01	k: 56584	n:150000
BCL11A   150000 perm   46 sec   (3277 perm/sec)   p_kst 3.772267e-01   p_cons 1.021333e-02   p_joint 2.714667e-02

Outputting figure to mutsig2_images.part000000000015/BCL11A.8_2630_150000_0.37723_0.010213_0.027147.png
                gene_name: BCL11A
               theta_stop: 0.100 
                    nperm: 150000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.010 
      ci_cons_bounds_left: 0.0097 
     ci_cons_bounds_right: 0.011 
                  p_joint: 0.027 
     ci_joint_bounds_left: 0.026 
    ci_joint_bounds_right: 0.028 

Current progress: 23 percent done.
BBS9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.797044e-02	ci left: 6.532365e-01	ci right 6.718687e-01	k: 6626	n:10000
Cons ci ratio: 1.402266e-02	ci left: 8.802224e-01	ci right 8.927514e-01	k: 8866	n:10000
KS ci ratio: 3.720675e-02	ci left: 5.161571e-01	ci right 5.358278e-01	k: 5260	n:10000
BBS9   10000 perm   2 sec   (4961 perm/sec)   p_kst 5.260000e-01   p_cons 8.866000e-01   p_joint 6.626000e-01

Outputting figure to mutsig2_images.part000000000015/BBS9.7_2752_10000_0.526_0.8866_0.6626.png
                gene_name: BBS9
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 25 percent done.
BAI2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.532928e-02	ci left: 8.605959e-01	ci right 8.739894e-01	k: 8674	n:10000
Cons ci ratio: 2.496645e-02	ci left: 7.024085e-01	ci right 7.202682e-01	k: 7114	n:10000
KS ci ratio: 3.194990e-02	ci left: 5.911232e-01	ci right 6.104181e-01	k: 6008	n:10000
BAI2   10000 perm   2 sec   (4012 perm/sec)   p_kst 6.008000e-01   p_cons 7.114000e-01   p_joint 8.674000e-01

Outputting figure to mutsig2_images.part000000000015/BAI2.6_4882_10000_0.6008_0.7114_0.8674.png
                gene_name: BAI2
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 27 percent done.
BAZ1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.563429e-02	ci left: 4.147857e-01	ci right 4.342583e-01	k: 4245	n:10000
Cons ci ratio: 3.297202e-02	ci left: 5.758711e-01	ci right 5.952790e-01	k: 5856	n:10000
KS ci ratio: 5.826473e-02	ci left: 3.024292e-01	ci right 3.206807e-01	k: 3115	n:10000
BAZ1B   10000 perm   2 sec   (4297 perm/sec)   p_kst 3.115000e-01   p_cons 5.856000e-01   p_joint 4.245000e-01

Outputting figure to mutsig2_images.part000000000015/BAZ1B.6_4528_10000_0.3115_0.5856_0.4245.png
                gene_name: BAZ1B
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 30 percent done.
BBX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.503252e-02	ci left: 4.212652e-01	ci right 4.407750e-01	k: 4310	n:10000
KS ci ratio: 6.092823e-03	ci left: 9.733385e-01	ci right 9.793796e-01	k: 9765	n:10000
BBX   10000 perm   2 sec   (4572 perm/sec)   p_kst 9.765000e-01   p_cons 4.310000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000015/BBX.6_2886_10000_0.9765_0.431_1.png
                gene_name: BBX
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 32 percent done.
BCAR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.980390e-01	ci left: 3.395684e-02	ci right 4.151552e-02	k: 376	n:10000
Cons ci ratio: 1.009590e-01	ci left: 1.243474e-01	ci right 1.376684e-01	k: 1309	n:10000
KS ci ratio: 3.064274e-01	ci left: 1.363247e-02	ci right 1.865513e-02	k: 160	n:10000
BCAR1   10000 perm   2 sec   (4863 perm/sec)   p_kst 1.600000e-02   p_cons 1.309000e-01   p_joint 3.760000e-02

Joint ci ratio: 2.309462e-01	ci left: 1.255904e-02	ci right 1.588439e-02	k: 283	n:20000
Cons ci ratio: 6.865601e-02	ci left: 1.353172e-01	ci right 1.449877e-01	k: 2802	n:20000
KS ci ratio: 2.053109e-01	ci left: 1.606033e-02	ci right 1.978172e-02	k: 357	n:20000
BCAR1   20000 perm   5 sec   (4352 perm/sec)   p_kst 1.785000e-02   p_cons 1.401000e-01   p_joint 1.415000e-02

Joint ci ratio: 1.403785e-01	ci left: 2.355244e-02	ci right 2.714029e-02	k: 759	n:30000
Cons ci ratio: 5.617820e-02	ci left: 1.356966e-01	ci right 1.435733e-01	k: 4188	n:30000
KS ci ratio: 1.663795e-01	ci left: 1.665355e-02	ci right 1.970744e-02	k: 544	n:30000
BCAR1   30000 perm   7 sec   (4151 perm/sec)   p_kst 1.813333e-02   p_cons 1.396000e-01   p_joint 2.530000e-02

Joint ci ratio: 1.400846e-01	ci left: 1.785355e-02	ci right 2.056689e-02	k: 767	n:40000
Cons ci ratio: 5.006930e-02	ci left: 1.295381e-01	ci right 1.362153e-01	k: 5314	n:40000
KS ci ratio: 1.434540e-01	ci left: 1.700905e-02	ci right 1.966153e-02	k: 732	n:40000
BCAR1   40000 perm   10 sec   (4023 perm/sec)   p_kst 1.830000e-02   p_cons 1.328500e-01   p_joint 1.917500e-02

Joint ci ratio: 9.632510e-02	ci left: 3.051360e-02	ci right 3.362103e-02	k: 1602	n:50000
Cons ci ratio: 4.458531e-02	ci left: 1.309066e-01	ci right 1.368960e-01	k: 6694	n:50000
KS ci ratio: 1.239854e-01	ci left: 1.838351e-02	ci right 2.083271e-02	k: 979	n:50000
BCAR1   50000 perm   13 sec   (3906 perm/sec)   p_kst 1.958000e-02   p_cons 1.338800e-01   p_joint 3.204000e-02

Joint ci ratio: 9.912960e-02	ci left: 2.413947e-02	ci right 2.667339e-02	k: 1523	n:60000
Cons ci ratio: 4.066854e-02	ci left: 1.313498e-01	ci right 1.368190e-01	k: 8044	n:60000
KS ci ratio: 1.137266e-01	ci left: 1.831134e-02	ci right 2.053549e-02	k: 1164	n:60000
BCAR1   60000 perm   16 sec   (3822 perm/sec)   p_kst 1.940000e-02   p_cons 1.340667e-01   p_joint 2.538333e-02

Joint ci ratio: 1.239550e-01	ci left: 1.321192e-02	ci right 1.497155e-02	k: 985	n:70000
Cons ci ratio: 3.770244e-02	ci left: 1.312436e-01	ci right 1.363011e-01	k: 9363	n:70000
KS ci ratio: 1.081307e-01	ci left: 1.743119e-02	ci right 1.943759e-02	k: 1289	n:70000
BCAR1   70000 perm   19 sec   (3749 perm/sec)   p_kst 1.841429e-02   p_cons 1.337571e-01   p_joint 1.407143e-02

Joint ci ratio: 1.034695e-01	ci left: 1.671228e-02	ci right 1.854794e-02	k: 1409	n:80000
Cons ci ratio: 3.519857e-02	ci left: 1.318574e-01	ci right 1.365942e-01	k: 10737	n:80000
KS ci ratio: 1.004307e-01	ci left: 1.774816e-02	ci right 1.963698e-02	k: 1494	n:80000
BCAR1   80000 perm   22 sec   (3667 perm/sec)   p_kst 1.867500e-02   p_cons 1.342125e-01   p_joint 1.761250e-02

Joint ci ratio: 9.857711e-02	ci left: 1.641482e-02	ci right 1.812761e-02	k: 1553	n:90000
Cons ci ratio: 3.320499e-02	ci left: 1.318579e-01	ci right 1.363212e-01	k: 12067	n:90000
KS ci ratio: 9.479839e-02	ci left: 1.775986e-02	ci right 1.953803e-02	k: 1677	n:90000
BCAR1   90000 perm   25 sec   (3599 perm/sec)   p_kst 1.863333e-02   p_cons 1.340778e-01   p_joint 1.725556e-02

Outputting figure to mutsig2_images.part000000000015/BCAR1.6_3038_90000_0.018633_0.13408_0.017256.png
                gene_name: BCAR1
               theta_stop: 0.099 
                    nperm: 90000 
                     p_ks: 0.019 
        ci_ks_bounds_left: 0.018 
       ci_ks_bounds_right: 0.020 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.017 
     ci_joint_bounds_left: 0.016 
    ci_joint_bounds_right: 0.018 

Current progress: 34 percent done.
BACH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.253919e-02	ci left: 5.822919e-01	ci right 6.016545e-01	k: 5920	n:10000
KS ci ratio: 2.499077e-02	ci left: 7.020050e-01	ci right 7.198720e-01	k: 7110	n:10000
BACH2   10000 perm   2 sec   (5054 perm/sec)   p_kst 7.110000e-01   p_cons 5.920000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000015/BACH2.5_2542_10000_0.711_0.592_1.png
                gene_name: BACH2
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 36 percent done.
BAT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.277834e-02	ci left: 8.980579e-01	ci right 9.097056e-01	k: 9040	n:10000
Cons ci ratio: 6.301137e-03	ci left: 9.716422e-01	ci right 9.778770e-01	k: 9749	n:10000
KS ci ratio: 4.523504e-02	ci left: 4.190720e-01	ci right 4.385695e-01	k: 4288	n:10000
BAT2   10000 perm   3 sec   (3779 perm/sec)   p_kst 4.288000e-01   p_cons 9.749000e-01   p_joint 9.040000e-01

Outputting figure to mutsig2_images.part000000000015/BAT2.5_6594_10000_0.4288_0.9749_0.904.png
                gene_name: BAT2
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 39 percent done.
BBS7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.812426e-02	ci left: 8.162904e-01	ci right 8.313205e-01	k: 8239	n:10000
Cons ci ratio: 2.178682e-02	ci left: 7.555514e-01	ci right 7.722946e-01	k: 7640	n:10000
KS ci ratio: 3.482738e-02	ci left: 5.490022e-01	ci right 5.685635e-01	k: 5588	n:10000
BBS7   10000 perm   2 sec   (5497 perm/sec)   p_kst 5.588000e-01   p_cons 7.640000e-01   p_joint 8.239000e-01

Outputting figure to mutsig2_images.part000000000015/BBS7.5_2229_10000_0.5588_0.764_0.8239.png
                gene_name: BBS7
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 41 percent done.
BCAS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.524960e-02	ci left: 2.564684e-01	ci right 2.738686e-01	k: 2651	n:10000
Cons ci ratio: 9.431236e-02	ci left: 1.403092e-01	ci right 1.542969e-01	k: 1472	n:10000
KS ci ratio: 5.448234e-02	ci left: 3.317063e-01	ci right 3.503864e-01	k: 3410	n:10000
BCAS1   10000 perm   2 sec   (5430 perm/sec)   p_kst 3.410000e-01   p_cons 1.472000e-01   p_joint 2.651000e-01

Outputting figure to mutsig2_images.part000000000015/BCAS1.5_1799_10000_0.341_0.1472_0.2651.png
                gene_name: BCAS1
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 43 percent done.
BAHCC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.561642e-02	ci left: 3.225714e-01	ci right 3.411266e-01	k: 3318	n:10000
KS ci ratio: 9.751082e-03	ci left: 9.370311e-01	ci right 9.463095e-01	k: 9418	n:10000
BAHCC1   10000 perm   3 sec   (3359 perm/sec)   p_kst 9.418000e-01   p_cons 3.318000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000015/BAHCC1.4_7770_10000_0.9418_0.3318_1.png
                gene_name: BAHCC1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 45 percent done.
BARD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.987402e-02	ci left: 4.815553e-01	ci right 5.012497e-01	k: 4914	n:10000
Cons ci ratio: 1.450598e-02	ci left: 8.730609e-01	ci right 8.859171e-01	k: 8796	n:10000
KS ci ratio: 7.669991e-02	ci left: 1.990953e-01	ci right 2.150757e-01	k: 2070	n:10000
BARD1   10000 perm   2 sec   (5188 perm/sec)   p_kst 2.070000e-01   p_cons 8.796000e-01   p_joint 4.914000e-01

Outputting figure to mutsig2_images.part000000000015/BARD1.4_2378_10000_0.207_0.8796_0.4914.png
                gene_name: BARD1
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 48 percent done.
BAZ2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.395993e-02	ci left: 5.614305e-01	ci right 5.809280e-01	k: 5712	n:10000
Cons ci ratio: 6.977475e-02	ci left: 2.314584e-01	ci right 2.482934e-01	k: 2398	n:10000
KS ci ratio: 2.399040e-02	ci left: 7.186579e-01	ci right 7.362094e-01	k: 7275	n:10000
BAZ2A   10000 perm   3 sec   (3777 perm/sec)   p_kst 7.275000e-01   p_cons 2.398000e-01   p_joint 5.712000e-01

Outputting figure to mutsig2_images.part000000000015/BAZ2A.4_5834_10000_0.7275_0.2398_0.5712.png
                gene_name: BAZ2A
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 50 percent done.
BCAR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.391144e-02	ci left: 5.621323e-01	ci right 5.816258e-01	k: 5719	n:10000
Cons ci ratio: 2.921903e-02	ci left: 6.333178e-01	ci right 6.521989e-01	k: 6428	n:10000
KS ci ratio: 4.846382e-02	ci left: 3.857986e-01	ci right 4.050623e-01	k: 3954	n:10000
BCAR3   10000 perm   2 sec   (5073 perm/sec)   p_kst 3.954000e-01   p_cons 6.428000e-01   p_joint 5.719000e-01

Outputting figure to mutsig2_images.part000000000015/BCAR3.4_2522_10000_0.3954_0.6428_0.5719.png
                gene_name: BCAR3
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 52 percent done.
BCAS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.241471e-02	ci left: 9.030904e-01	ci right 9.144701e-01	k: 9089	n:10000
Cons ci ratio: 2.375459e-02	ci left: 7.225963e-01	ci right 7.400688e-01	k: 7314	n:10000
KS ci ratio: 3.385608e-02	ci left: 5.629343e-01	ci right 5.824233e-01	k: 5727	n:10000
BCAS3   10000 perm   2 sec   (5113 perm/sec)   p_kst 5.727000e-01   p_cons 7.314000e-01   p_joint 9.089000e-01

Outputting figure to mutsig2_images.part000000000015/BCAS3.4_2883_10000_0.5727_0.7314_0.9089.png
                gene_name: BCAS3
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 55 percent done.
BAGE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.320203e-02	ci left: 1.432503e-01	ci right 1.573541e-01	k: 1502	n:10000
Cons ci ratio: 1.345173e-02	ci left: 8.885187e-01	ci right 9.006503e-01	k: 8947	n:10000
KS ci ratio: 1.525972e-01	ci left: 5.715872e-02	ci right 6.669845e-02	k: 618	n:10000
BAGE2   10000 perm   2 sec   (6596 perm/sec)   p_kst 6.180000e-02   p_cons 8.947000e-01   p_joint 1.502000e-01

Joint ci ratio: 5.538456e-02	ci left: 1.947227e-01	ci right 2.058646e-01	k: 4005	n:20000
Cons ci ratio: 9.322776e-03	ci left: 8.941298e-01	ci right 9.025540e-01	k: 17968	n:20000
KS ci ratio: 1.098083e-01	ci left: 5.660168e-02	ci right 6.322698e-02	k: 1197	n:20000
BAGE2   20000 perm   3 sec   (5726 perm/sec)   p_kst 5.985000e-02   p_cons 8.984000e-01   p_joint 2.002500e-01

Joint ci ratio: 4.408216e-02	ci left: 2.039809e-01	ci right 2.132089e-01	k: 6257	n:30000
Cons ci ratio: 7.631088e-03	ci left: 8.944523e-01	ci right 9.013371e-01	k: 26938	n:30000
KS ci ratio: 9.038324e-02	ci left: 5.632722e-02	ci right 6.169192e-02	k: 1769	n:30000
BAGE2   30000 perm   6 sec   (5412 perm/sec)   p_kst 5.896667e-02   p_cons 8.979333e-01   p_joint 2.085667e-01

Outputting figure to mutsig2_images.part000000000015/BAGE2.3_346_30000_0.058967_0.89793_0.20857.png
                gene_name: BAGE2
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.059 
        ci_ks_bounds_left: 0.056 
       ci_ks_bounds_right: 0.062 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 57 percent done.
BAT2L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.166412e-01	ci left: 2.825837e-02	ci right 3.521793e-02	k: 316	n:10000
Cons ci ratio: 7.829804e-01	ci left: 1.538312e-03	ci right 3.568919e-03	k: 24	n:10000
KS ci ratio: 3.111066e-02	ci left: 6.038741e-01	ci right 6.230598e-01	k: 6135	n:10000
BAT2L1   10000 perm   3 sec   (3771 perm/sec)   p_kst 6.135000e-01   p_cons 2.400000e-03   p_joint 3.160000e-02

Joint ci ratio: 1.792614e-01	ci left: 2.125382e-02	ci right 2.548631e-02	k: 466	n:20000
Cons ci ratio: 5.651098e-01	ci left: 1.727187e-03	ci right 3.123791e-03	k: 47	n:20000
KS ci ratio: 2.219963e-02	ci left: 6.023973e-01	ci right 6.159710e-01	k: 12184	n:20000
BAT2L1   20000 perm   6 sec   (3419 perm/sec)   p_kst 6.092000e-01   p_cons 2.350000e-03   p_joint 2.330000e-02

Joint ci ratio: 2.344363e-01	ci left: 8.150696e-03	ci right 1.034592e-02	k: 276	n:30000
Cons ci ratio: 5.839110e-01	ci left: 1.065878e-03	ci right 1.968437e-03	k: 44	n:30000
KS ci ratio: 1.824191e-02	ci left: 6.006110e-01	ci right 6.117017e-01	k: 18185	n:30000
BAT2L1   30000 perm   9 sec   (3304 perm/sec)   p_kst 6.061667e-01   p_cons 1.466667e-03   p_joint 9.200000e-03

Joint ci ratio: 1.465389e-01	ci left: 1.628581e-02	ci right 1.888490e-02	k: 702	n:40000
Cons ci ratio: 3.802345e-01	ci left: 2.147477e-03	ci right 3.176844e-03	k: 105	n:40000
KS ci ratio: 1.572018e-02	ci left: 6.037217e-01	ci right 6.133126e-01	k: 24341	n:40000
BAT2L1   40000 perm   12 sec   (3212 perm/sec)   p_kst 6.085250e-01   p_cons 2.625000e-03   p_joint 1.755000e-02

Joint ci ratio: 1.315840e-01	ci left: 1.629133e-02	ci right 1.860519e-02	k: 871	n:50000
Cons ci ratio: 3.228373e-01	ci left: 2.466107e-03	ci right 3.433034e-03	k: 146	n:50000
KS ci ratio: 1.402009e-02	ci left: 6.056083e-01	ci right 6.141790e-01	k: 30495	n:50000
BAT2L1   50000 perm   16 sec   (3139 perm/sec)   p_kst 6.099000e-01   p_cons 2.920000e-03   p_joint 1.742000e-02

Joint ci ratio: 1.116905e-01	ci left: 1.899197e-02	ci right 2.125478e-02	k: 1206	n:60000
Cons ci ratio: 2.862094e-01	ci left: 2.671036e-03	ci right 3.578081e-03	k: 186	n:60000
KS ci ratio: 1.282773e-02	ci left: 6.048983e-01	ci right 6.127245e-01	k: 36529	n:60000
BAT2L1   60000 perm   19 sec   (3086 perm/sec)   p_kst 6.088167e-01   p_cons 3.100000e-03   p_joint 2.010000e-02

Joint ci ratio: 9.198884e-02	ci left: 2.412133e-02	ci right 2.646111e-02	k: 1769	n:70000
Cons ci ratio: 2.580503e-01	ci left: 2.861975e-03	ci right 3.722870e-03	k: 229	n:70000
KS ci ratio: 1.184636e-02	ci left: 6.063894e-01	ci right 6.136300e-01	k: 42701	n:70000
BAT2L1   70000 perm   23 sec   (3035 perm/sec)   p_kst 6.100143e-01   p_cons 3.271429e-03   p_joint 2.527143e-02

Joint ci ratio: 6.966092e-02	ci left: 3.674708e-02	ci right 3.941155e-02	k: 3045	n:80000
Cons ci ratio: 2.427112e-01	ci left: 2.855715e-03	ci right 3.655979e-03	k: 259	n:80000
KS ci ratio: 1.105513e-02	ci left: 6.077492e-01	ci right 6.145178e-01	k: 48891	n:80000
BAT2L1   80000 perm   27 sec   (2992 perm/sec)   p_kst 6.111375e-01   p_cons 3.237500e-03   p_joint 3.806250e-02

Joint ci ratio: 5.172930e-02	ci left: 5.842416e-02	ci right 6.153761e-02	k: 5397	n:90000
Cons ci ratio: 2.302164e-01	ci left: 2.841554e-03	ci right 3.591032e-03	k: 288	n:90000
KS ci ratio: 1.042201e-02	ci left: 6.079839e-01	ci right 6.143645e-01	k: 55006	n:90000
BAT2L1   90000 perm   31 sec   (2951 perm/sec)   p_kst 6.111778e-01   p_cons 3.200000e-03   p_joint 5.996667e-02

Joint ci ratio: 5.585637e-02	ci left: 4.562736e-02	ci right 4.825900e-02	k: 4693	n:100000
Cons ci ratio: 2.177610e-01	ci left: 2.878341e-03	ci right 3.590955e-03	k: 322	n:100000
KS ci ratio: 9.869273e-03	ci left: 6.090116e-01	ci right 6.150619e-01	k: 61204	n:100000
BAT2L1   100000 perm   34 sec   (2909 perm/sec)   p_kst 6.120400e-01   p_cons 3.220000e-03   p_joint 4.693000e-02

Joint ci ratio: 5.935742e-02	ci left: 3.700323e-02	ci right 3.927575e-02	k: 4194	n:110000
Cons ci ratio: 2.065509e-01	ci left: 2.926575e-03	ci right 3.609121e-03	k: 358	n:110000
KS ci ratio: 9.410424e-03	ci left: 6.091311e-01	ci right 6.148994e-01	k: 67322	n:110000
BAT2L1   110000 perm   38 sec   (2872 perm/sec)   p_kst 6.120182e-01   p_cons 3.254545e-03   p_joint 3.812727e-02

Joint ci ratio: 4.940346e-02	ci left: 4.861712e-02	ci right 5.108802e-02	k: 5981	n:120000
Cons ci ratio: 1.981733e-01	ci left: 2.927941e-03	ci right 3.579764e-03	k: 389	n:120000
KS ci ratio: 9.001454e-03	ci left: 6.096950e-01	ci right 6.152162e-01	k: 73495	n:120000
BAT2L1   120000 perm   42 sec   (2833 perm/sec)   p_kst 6.124583e-01   p_cons 3.241667e-03   p_joint 4.984167e-02

Joint ci ratio: 4.492638e-02	ci left: 5.407883e-02	ci right 5.657182e-02	k: 7191	n:130000
Cons ci ratio: 1.889461e-01	ci left: 2.988192e-03	ci right 3.618900e-03	k: 428	n:130000
KS ci ratio: 8.643080e-03	ci left: 6.100918e-01	ci right 6.153954e-01	k: 79657	n:130000
BAT2L1   130000 perm   46 sec   (2798 perm/sec)   p_kst 6.127462e-01   p_cons 3.292308e-03   p_joint 5.531538e-02

Joint ci ratio: 4.443391e-02	ci left: 5.149290e-02	ci right 5.383996e-02	k: 7372	n:140000
Cons ci ratio: 1.842874e-01	ci left: 2.924543e-03	ci right 3.524895e-03	k: 450	n:140000
KS ci ratio: 8.328868e-03	ci left: 6.101782e-01	ci right 6.152886e-01	k: 85783	n:140000
BAT2L1   140000 perm   51 sec   (2765 perm/sec)   p_kst 6.127357e-01   p_cons 3.214286e-03   p_joint 5.265714e-02

Joint ci ratio: 3.855895e-02	ci left: 6.321575e-02	ci right 6.570778e-02	k: 9668	n:150000
Cons ci ratio: 1.780782e-01	ci left: 2.933234e-03	ci right 3.512898e-03	k: 482	n:150000
KS ci ratio: 8.035987e-03	ci left: 6.108834e-01	ci right 6.158189e-01	k: 92003	n:150000
BAT2L1   150000 perm   55 sec   (2732 perm/sec)   p_kst 6.133533e-01   p_cons 3.213333e-03   p_joint 6.445333e-02

Joint ci ratio: 3.496272e-02	ci left: 7.156879e-02	ci right 7.412172e-02	k: 11654	n:160000
Cons ci ratio: 1.733031e-01	ci left: 2.911234e-03	ci right 3.469509e-03	k: 509	n:160000
KS ci ratio: 7.781177e-03	ci left: 6.109399e-01	ci right 6.157185e-01	k: 98133	n:160000
BAT2L1   160000 perm   59 sec   (2700 perm/sec)   p_kst 6.133312e-01   p_cons 3.181250e-03   p_joint 7.283750e-02

Joint ci ratio: 3.481309e-02	ci left: 6.819636e-02	ci right 7.061835e-02	k: 11798	n:170000
Cons ci ratio: 1.692090e-01	ci left: 2.880737e-03	ci right 3.418781e-03	k: 534	n:170000
KS ci ratio: 7.545138e-03	ci left: 6.112452e-01	ci right 6.158804e-01	k: 104306	n:170000
BAT2L1   170000 perm   64 sec   (2664 perm/sec)   p_kst 6.135647e-01   p_cons 3.141176e-03   p_joint 6.940000e-02

Joint ci ratio: 3.228677e-02	ci left: 7.447105e-02	ci right 7.692042e-02	k: 13624	n:180000
Cons ci ratio: 1.648025e-01	ci left: 2.875073e-03	ci right 3.396689e-03	k: 563	n:180000
KS ci ratio: 7.333474e-03	ci left: 6.112514e-01	ci right 6.157560e-01	k: 110431	n:180000
BAT2L1   180000 perm   69 sec   (2628 perm/sec)   p_kst 6.135056e-01   p_cons 3.127778e-03   p_joint 7.568889e-02

Joint ci ratio: 4.332571e-02	ci left: 4.040965e-02	ci right 4.220438e-02	k: 7847	n:190000
Cons ci ratio: 1.601823e-01	ci left: 2.890377e-03	ci right 3.398654e-03	k: 596	n:190000
KS ci ratio: 7.141451e-03	ci left: 6.110743e-01	ci right 6.154591e-01	k: 116521	n:190000
BAT2L1   190000 perm   73 sec   (2596 perm/sec)   p_kst 6.132684e-01   p_cons 3.136842e-03   p_joint 4.130000e-02

Joint ci ratio: 4.344732e-02	ci left: 3.825964e-02	ci right 3.996375e-02	k: 7821	n:200000
Cons ci ratio: 1.559300e-01	ci left: 2.904334e-03	ci right 3.400239e-03	k: 629	n:200000
KS ci ratio: 6.964860e-03	ci left: 6.108412e-01	ci right 6.151155e-01	k: 122596	n:200000
BAT2L1   200000 perm   78 sec   (2565 perm/sec)   p_kst 6.129800e-01   p_cons 3.145000e-03   p_joint 3.910500e-02

Joint ci ratio: 4.390503e-02	ci left: 3.576792e-02	ci right 3.737824e-02	k: 7679	n:210000
Cons ci ratio: 1.524614e-01	ci left: 2.898799e-03	ci right 3.381744e-03	k: 658	n:210000
KS ci ratio: 6.797064e-03	ci left: 6.108891e-01	ci right 6.150602e-01	k: 128725	n:210000
BAT2L1   210000 perm   83 sec   (2531 perm/sec)   p_kst 6.129762e-01   p_cons 3.133333e-03   p_joint 3.656667e-02

Joint ci ratio: 4.107199e-02	ci left: 3.894191e-02	ci right 4.057934e-02	k: 8746	n:220000
Cons ci ratio: 1.491057e-01	ci left: 2.898254e-03	ci right 3.369533e-03	k: 688	n:220000
KS ci ratio: 6.644847e-03	ci left: 6.106470e-01	ci right 6.147227e-01	k: 134791	n:220000
BAT2L1   220000 perm   88 sec   (2505 perm/sec)   p_kst 6.126864e-01   p_cons 3.127273e-03   p_joint 3.975455e-02

Joint ci ratio: 4.218078e-02	ci left: 3.542740e-02	ci right 3.695823e-02	k: 8323	n:230000
Cons ci ratio: 1.451545e-01	ci left: 2.931383e-03	ci right 3.394322e-03	k: 726	n:230000
KS ci ratio: 6.497889e-03	ci left: 6.107578e-01	ci right 6.147437e-01	k: 140933	n:230000
BAT2L1   230000 perm   93 sec   (2478 perm/sec)   p_kst 6.127522e-01   p_cons 3.156522e-03   p_joint 3.618696e-02

Joint ci ratio: 4.184285e-02	ci left: 3.454050e-02	ci right 3.602075e-02	k: 8466	n:240000
Cons ci ratio: 1.419677e-01	ci left: 2.941804e-03	ci right 3.395326e-03	k: 759	n:240000
KS ci ratio: 6.361832e-03	ci left: 6.107435e-01	ci right 6.146455e-01	k: 147047	n:240000
BAT2L1   240000 perm   98 sec   (2451 perm/sec)   p_kst 6.126958e-01   p_cons 3.162500e-03   p_joint 3.527500e-02

Joint ci ratio: 4.151446e-02	ci left: 3.372066e-02	ci right 3.515416e-02	k: 8608	n:250000
Cons ci ratio: 1.392465e-01	ci left: 2.939910e-03	ci right 3.383732e-03	k: 789	n:250000
KS ci ratio: 6.235398e-03	ci left: 6.106230e-01	ci right 6.144464e-01	k: 153134	n:250000
BAT2L1   250000 perm   103 sec   (2426 perm/sec)   p_kst 6.125360e-01   p_cons 3.156000e-03   p_joint 3.443200e-02

Joint ci ratio: 4.117096e-02	ci left: 3.299822e-02	ci right 3.438913e-02	k: 8759	n:260000
Cons ci ratio: 1.367597e-01	ci left: 2.934524e-03	ci right 3.368976e-03	k: 818	n:260000
KS ci ratio: 6.116410e-03	ci left: 6.104972e-01	ci right 6.142465e-01	k: 159217	n:260000
BAT2L1   260000 perm   108 sec   (2403 perm/sec)   p_kst 6.123731e-01   p_cons 3.146154e-03   p_joint 3.368846e-02

Joint ci ratio: 3.336114e-02	ci left: 4.783600e-02	ci right 4.946259e-02	k: 13134	n:270000
Cons ci ratio: 1.340847e-01	ci left: 2.943920e-03	ci right 3.370559e-03	k: 851	n:270000
KS ci ratio: 6.003936e-03	ci left: 6.103850e-01	ci right 6.140644e-01	k: 165301	n:270000
BAT2L1   270000 perm   114 sec   (2378 perm/sec)   p_kst 6.122259e-01   p_cons 3.151852e-03   p_joint 4.864444e-02

Joint ci ratio: 3.180505e-02	ci left: 5.064169e-02	ci right 5.228190e-02	k: 14408	n:280000
Cons ci ratio: 1.314118e-01	ci left: 2.959631e-03	ci right 3.379329e-03	k: 886	n:280000
KS ci ratio: 5.895140e-03	ci left: 6.104674e-01	ci right 6.140803e-01	k: 171437	n:280000
BAT2L1   280000 perm   119 sec   (2353 perm/sec)   p_kst 6.122750e-01   p_cons 3.164286e-03   p_joint 5.145714e-02

Joint ci ratio: 3.313684e-02	ci left: 4.527117e-02	ci right 4.679999e-02	k: 13349	n:290000
Cons ci ratio: 1.293864e-01	ci left: 2.950976e-03	ci right 3.362501e-03	k: 914	n:290000
KS ci ratio: 5.789990e-03	ci left: 6.107137e-01	ci right 6.142634e-01	k: 177622	n:290000
BAT2L1   290000 perm   125 sec   (2329 perm/sec)   p_kst 6.124897e-01   p_cons 3.151724e-03   p_joint 4.603103e-02

Joint ci ratio: 3.263484e-02	ci left: 4.513734e-02	ci right 4.663811e-02	k: 13765	n:300000
Cons ci ratio: 1.273164e-01	ci left: 2.949399e-03	ci right 3.353627e-03	k: 944	n:300000
KS ci ratio: 5.692989e-03	ci left: 6.107172e-01	ci right 6.142073e-01	k: 183739	n:300000
BAT2L1   300000 perm   130 sec   (2306 perm/sec)   p_kst 6.124633e-01   p_cons 3.146667e-03   p_joint 4.588333e-02

Joint ci ratio: 3.207683e-02	ci left: 4.522359e-02	ci right 4.670104e-02	k: 14247	n:310000
Cons ci ratio: 1.253427e-01	ci left: 2.947973e-03	ci right 3.345277e-03	k: 974	n:310000
KS ci ratio: 5.599981e-03	ci left: 6.107824e-01	ci right 6.142155e-01	k: 189875	n:310000
BAT2L1   310000 perm   136 sec   (2283 perm/sec)   p_kst 6.125000e-01   p_cons 3.141935e-03   p_joint 4.595806e-02

Joint ci ratio: 3.155885e-02	ci left: 4.527053e-02	ci right 4.672520e-02	k: 14718	n:320000
Cons ci ratio: 1.233350e-01	ci left: 2.952738e-03	ci right 3.343845e-03	k: 1006	n:320000
KS ci ratio: 5.508124e-03	ci left: 6.111253e-01	ci right 6.145039e-01	k: 196101	n:320000
BAT2L1   320000 perm   142 sec   (2261 perm/sec)   p_kst 6.128156e-01   p_cons 3.143750e-03   p_joint 4.599375e-02

Joint ci ratio: 2.861902e-02	ci left: 5.302358e-02	ci right 5.456608e-02	k: 17751	n:330000
Cons ci ratio: 1.217740e-01	ci left: 2.939633e-03	ci right 3.323720e-03	k: 1032	n:330000
KS ci ratio: 5.421745e-03	ci left: 6.113509e-01	ci right 6.146774e-01	k: 202295	n:330000
BAT2L1   330000 perm   147 sec   (2240 perm/sec)   p_kst 6.130152e-01   p_cons 3.127273e-03   p_joint 5.379091e-02

Joint ci ratio: 3.104552e-02	ci left: 4.409540e-02	ci right 4.548884e-02	k: 15228	n:340000
Cons ci ratio: 1.208444e-01	ci left: 2.898800e-03	ci right 3.274454e-03	k: 1048	n:340000
KS ci ratio: 5.341987e-03	ci left: 6.113251e-01	ci right 6.146024e-01	k: 208408	n:340000
BAT2L1   340000 perm   153 sec   (2219 perm/sec)   p_kst 6.129647e-01   p_cons 3.082353e-03   p_joint 4.478824e-02

Joint ci ratio: 3.059360e-02	ci left: 4.411985e-02	ci right 4.549342e-02	k: 15681	n:350000
Cons ci ratio: 1.190975e-01	ci left: 2.901891e-03	ci right 3.272126e-03	k: 1079	n:350000
KS ci ratio: 5.263968e-03	ci left: 6.114527e-01	ci right 6.146826e-01	k: 214574	n:350000
BAT2L1   350000 perm   159 sec   (2198 perm/sec)   p_kst 6.130686e-01   p_cons 3.082857e-03   p_joint 4.480286e-02

Joint ci ratio: 3.087589e-02	ci left: 4.219350e-02	ci right 4.351943e-02	k: 15427	n:360000
Cons ci ratio: 1.177435e-01	ci left: 2.888669e-03	ci right 3.252736e-03	k: 1104	n:360000
KS ci ratio: 5.189088e-03	ci left: 6.115901e-01	ci right 6.147747e-01	k: 220746	n:360000
BAT2L1   360000 perm   165 sec   (2178 perm/sec)   p_kst 6.131833e-01   p_cons 3.066667e-03   p_joint 4.285278e-02

Joint ci ratio: 3.078851e-02	ci left: 4.132640e-02	ci right 4.262133e-02	k: 15529	n:370000
Cons ci ratio: 1.156671e-01	ci left: 2.915551e-03	ci right 3.276084e-03	k: 1144	n:370000
KS ci ratio: 5.117459e-03	ci left: 6.117070e-01	ci right 6.148480e-01	k: 226913	n:370000
BAT2L1   370000 perm   172 sec   (2157 perm/sec)   p_kst 6.132784e-01   p_cons 3.091892e-03   p_joint 4.197027e-02

Joint ci ratio: 3.086224e-02	ci left: 4.009745e-02	ci right 4.135693e-02	k: 15475	n:380000
Cons ci ratio: 1.142298e-01	ci left: 2.912948e-03	ci right 3.268381e-03	k: 1173	n:380000
KS ci ratio: 5.049614e-03	ci left: 6.117336e-01	ci right 6.148331e-01	k: 233048	n:380000
BAT2L1   380000 perm   178 sec   (2137 perm/sec)   p_kst 6.132842e-01   p_cons 3.086842e-03   p_joint 4.072368e-02

Joint ci ratio: 3.076741e-02	ci left: 3.934386e-02	ci right 4.057581e-02	k: 15583	n:390000
Cons ci ratio: 1.128920e-01	ci left: 2.908012e-03	ci right 3.258410e-03	k: 1201	n:390000
KS ci ratio: 4.983508e-03	ci left: 6.118439e-01	ci right 6.149031e-01	k: 239216	n:390000
BAT2L1   390000 perm   184 sec   (2117 perm/sec)   p_kst 6.133744e-01   p_cons 3.079487e-03   p_joint 3.995641e-02

Joint ci ratio: 3.010732e-02	ci left: 4.004506e-02	ci right 4.127160e-02	k: 16262	n:400000
Cons ci ratio: 1.111477e-01	ci left: 2.927651e-03	ci right 3.274608e-03	k: 1239	n:400000
KS ci ratio: 4.921617e-03	ci left: 6.117862e-01	ci right 6.148071e-01	k: 245319	n:400000
BAT2L1   400000 perm   191 sec   (2097 perm/sec)   p_kst 6.132975e-01   p_cons 3.097500e-03   p_joint 4.065500e-02

Joint ci ratio: 2.987130e-02	ci left: 3.970732e-02	ci right 4.091382e-02	k: 16526	n:410000
Cons ci ratio: 1.100011e-01	ci left: 2.917905e-03	ci right 3.259909e-03	k: 1265	n:410000
KS ci ratio: 4.860052e-03	ci left: 6.119196e-01	ci right 6.149032e-01	k: 251499	n:410000
BAT2L1   410000 perm   197 sec   (2078 perm/sec)   p_kst 6.134122e-01   p_cons 3.085366e-03   p_joint 4.030732e-02

Joint ci ratio: 2.969227e-02	ci left: 3.925332e-02	ci right 4.043875e-02	k: 16734	n:420000
Cons ci ratio: 1.086786e-01	ci left: 2.920222e-03	ci right 3.258119e-03	k: 1296	n:420000
KS ci ratio: 4.803609e-03	ci left: 6.117633e-01	ci right 6.147114e-01	k: 257560	n:420000
BAT2L1   420000 perm   204 sec   (2060 perm/sec)   p_kst 6.132381e-01   p_cons 3.085714e-03   p_joint 3.984286e-02

Joint ci ratio: 2.935163e-02	ci left: 3.924304e-02	ci right 4.041433e-02	k: 17125	n:430000
Cons ci ratio: 1.070394e-01	ci left: 2.942826e-03	ci right 3.277879e-03	k: 1336	n:430000
KS ci ratio: 4.748644e-03	ci left: 6.116586e-01	ci right 6.145724e-01	k: 263640	n:430000
BAT2L1   430000 perm   211 sec   (2042 perm/sec)   p_kst 6.131163e-01   p_cons 3.106977e-03   p_joint 3.982558e-02

Joint ci ratio: 2.977394e-02	ci left: 3.733768e-02	ci right 3.846841e-02	k: 16676	n:440000
Cons ci ratio: 1.056262e-01	ci left: 2.955587e-03	ci right 3.287373e-03	k: 1372	n:440000
KS ci ratio: 4.694331e-03	ci left: 6.116795e-01	ci right 6.145599e-01	k: 269773	n:440000
BAT2L1   440000 perm   217 sec   (2024 perm/sec)   p_kst 6.131205e-01   p_cons 3.118182e-03   p_joint 3.790000e-02

Joint ci ratio: 2.858297e-02	ci left: 3.954628e-02	ci right 4.069521e-02	k: 18053	n:450000
Cons ci ratio: 1.038983e-01	ci left: 2.989454e-03	ci right 3.319217e-03	k: 1418	n:450000
KS ci ratio: 4.642079e-03	ci left: 6.116752e-01	ci right 6.145234e-01	k: 275895	n:450000
BAT2L1   450000 perm   224 sec   (2007 perm/sec)   p_kst 6.131000e-01   p_cons 3.151111e-03   p_joint 4.011778e-02

Joint ci ratio: 2.718683e-02	ci left: 4.265315e-02	ci right 4.383087e-02	k: 19890	n:460000
Cons ci ratio: 1.304660e-01	ci left: 1.830883e-03	ci right 2.088499e-03	k: 900	n:460000
KS ci ratio: 4.590230e-03	ci left: 6.118060e-01	ci right 6.146230e-01	k: 282079	n:460000
BAT2L1   460000 perm   231 sec   (1990 perm/sec)   p_kst 6.132152e-01   p_cons 1.956522e-03   p_joint 4.323913e-02

Joint ci ratio: 2.688666e-02	ci left: 4.268817e-02	ci right 4.385364e-02	k: 20336	n:470000
Cons ci ratio: 1.284837e-01	ci left: 1.849574e-03	ci right 2.105564e-03	k: 928	n:470000
KS ci ratio: 4.540588e-03	ci left: 6.118783e-01	ci right 6.146650e-01	k: 288238	n:470000
BAT2L1   470000 perm   238 sec   (1974 perm/sec)   p_kst 6.132723e-01   p_cons 1.974468e-03   p_joint 4.326809e-02

Joint ci ratio: 2.670925e-02	ci left: 4.237402e-02	ci right 4.352317e-02	k: 20614	n:480000
Cons ci ratio: 1.270555e-01	ci left: 1.853393e-03	ci right 2.106846e-03	k: 949	n:480000
KS ci ratio: 4.493036e-03	ci left: 6.118935e-01	ci right 6.146510e-01	k: 294371	n:480000
BAT2L1   480000 perm   245 sec   (1957 perm/sec)   p_kst 6.132729e-01   p_cons 1.977083e-03   p_joint 4.294583e-02

Joint ci ratio: 2.603988e-02	ci left: 4.362820e-02	ci right 4.478127e-02	k: 21659	n:490000
Cons ci ratio: 1.250944e-01	ci left: 1.874863e-03	ci right 2.127002e-03	k: 979	n:490000
KS ci ratio: 4.447751e-03	ci left: 6.118224e-01	ci right 6.145517e-01	k: 300462	n:490000
BAT2L1   490000 perm   253 sec   (1940 perm/sec)   p_kst 6.131878e-01   p_cons 1.997959e-03   p_joint 4.420204e-02

Joint ci ratio: 2.644355e-02	ci left: 4.154304e-02	ci right 4.265827e-02	k: 21049	n:500000
Cons ci ratio: 1.238371e-01	ci left: 1.876121e-03	ci right 2.125706e-03	k: 999	n:500000
KS ci ratio: 4.402861e-03	ci left: 6.118564e-01	ci right 6.145583e-01	k: 306604	n:500000
BAT2L1   500000 perm   260 sec   (1924 perm/sec)   p_kst 6.132080e-01   p_cons 1.998000e-03   p_joint 4.209800e-02

Joint ci ratio: 2.635454e-02	ci left: 4.102829e-02	ci right 4.212594e-02	k: 21203	n:510000
Cons ci ratio: 1.228587e-01	ci left: 1.869738e-03	ci right 2.116366e-03	k: 1015	n:510000
KS ci ratio: 4.360061e-03	ci left: 6.118068e-01	ci right 6.144821e-01	k: 312704	n:510000
BAT2L1   510000 perm   267 sec   (1909 perm/sec)   p_kst 6.131451e-01   p_cons 1.990196e-03   p_joint 4.157451e-02

Joint ci ratio: 2.526098e-02	ci left: 4.370027e-02	ci right 4.482020e-02	k: 23014	n:520000
Cons ci ratio: 1.215495e-01	ci left: 1.874796e-03	ci right 2.119267e-03	k: 1037	n:520000
KS ci ratio: 4.317872e-03	ci left: 6.118266e-01	ci right 6.144760e-01	k: 318839	n:520000
BAT2L1   520000 perm   275 sec   (1892 perm/sec)   p_kst 6.131519e-01   p_cons 1.994231e-03   p_joint 4.425769e-02

Joint ci ratio: 2.443316e-02	ci left: 4.575082e-02	ci right 4.688434e-02	k: 24547	n:530000
Cons ci ratio: 1.199416e-01	ci left: 1.890658e-03	ci right 2.133705e-03	k: 1065	n:530000
KS ci ratio: 4.277088e-03	ci left: 6.118231e-01	ci right 6.144474e-01	k: 324962	n:530000
BAT2L1   530000 perm   282 sec   (1877 perm/sec)   p_kst 6.131358e-01   p_cons 2.009434e-03   p_joint 4.631509e-02

Joint ci ratio: 2.409956e-02	ci left: 4.614427e-02	ci right 4.727171e-02	k: 25221	n:540000
Cons ci ratio: 1.185045e-01	ci left: 1.902359e-03	ci right 2.143774e-03	k: 1091	n:540000
KS ci ratio: 4.237124e-03	ci left: 6.118550e-01	ci right 6.144549e-01	k: 331104	n:540000
BAT2L1   540000 perm   290 sec   (1862 perm/sec)   p_kst 6.131556e-01   p_cons 2.020370e-03   p_joint 4.670556e-02

Joint ci ratio: 2.505353e-02	ci left: 4.208043e-02	ci right 4.314985e-02	k: 23437	n:550000
Cons ci ratio: 1.174340e-01	ci left: 1.903061e-03	ci right 2.142233e-03	k: 1111	n:550000
KS ci ratio: 4.198647e-03	ci left: 6.118423e-01	ci right 6.144184e-01	k: 337222	n:550000
BAT2L1   550000 perm   298 sec   (1847 perm/sec)   p_kst 6.131309e-01   p_cons 2.020000e-03   p_joint 4.261273e-02

Joint ci ratio: 2.263152e-02	ci left: 5.027426e-02	ci right 5.142682e-02	k: 28475	n:560000
Cons ci ratio: 1.161353e-01	ci left: 1.912417e-03	ci right 2.149924e-03	k: 1136	n:560000
KS ci ratio: 4.160776e-03	ci left: 6.118783e-01	ci right 6.144312e-01	k: 343367	n:560000
BAT2L1   560000 perm   306 sec   (1833 perm/sec)   p_kst 6.131554e-01   p_cons 2.028571e-03   p_joint 5.084821e-02

Joint ci ratio: 2.279464e-02	ci left: 4.876207e-02	ci right 4.988813e-02	k: 28114	n:570000
Cons ci ratio: 1.154777e-01	ci left: 1.901012e-03	ci right 2.135675e-03	k: 1149	n:570000
KS ci ratio: 4.124582e-03	ci left: 6.118359e-01	ci right 6.143664e-01	k: 349468	n:570000
BAT2L1   570000 perm   314 sec   (1816 perm/sec)   p_kst 6.131018e-01   p_cons 2.015789e-03   p_joint 4.932281e-02

Joint ci ratio: 2.208526e-02	ci left: 5.094973e-02	ci right 5.208923e-02	k: 29880	n:580000
Cons ci ratio: 1.143397e-01	ci left: 1.906752e-03	ci right 2.139647e-03	k: 1172	n:580000
KS ci ratio: 4.088009e-03	ci left: 6.119469e-01	ci right 6.144554e-01	k: 355657	n:580000
BAT2L1   580000 perm   322 sec   (1803 perm/sec)   p_kst 6.132017e-01   p_cons 2.020690e-03   p_joint 5.151724e-02

Joint ci ratio: 2.139694e-02	ci left: 5.324924e-02	ci right 5.440260e-02	k: 31756	n:590000
Cons ci ratio: 1.133297e-01	ci left: 1.909014e-03	ci right 2.139988e-03	k: 1193	n:590000
KS ci ratio: 4.054130e-03	ci left: 6.118508e-01	ci right 6.143380e-01	k: 361726	n:590000
BAT2L1   590000 perm   330 sec   (1789 perm/sec)   p_kst 6.130949e-01   p_cons 2.022034e-03   p_joint 5.382373e-02

Joint ci ratio: 2.121415e-02	ci left: 5.327189e-02	ci right 5.441576e-02	k: 32305	n:600000
Cons ci ratio: 1.124852e-01	ci left: 1.906349e-03	ci right 2.135168e-03	k: 1211	n:600000
KS ci ratio: 4.021036e-03	ci left: 6.117629e-01	ci right 6.142294e-01	k: 367798	n:600000
BAT2L1   600000 perm   338 sec   (1775 perm/sec)   p_kst 6.129967e-01   p_cons 2.018333e-03   p_joint 5.384167e-02

Joint ci ratio: 2.104376e-02	ci left: 5.325631e-02	ci right 5.439055e-02	k: 32831	n:610000
Cons ci ratio: 1.113874e-01	ci left: 1.913341e-03	ci right 2.140610e-03	k: 1235	n:610000
KS ci ratio: 3.988299e-03	ci left: 6.117304e-01	ci right 6.141767e-01	k: 373902	n:610000
BAT2L1   610000 perm   346 sec   (1762 perm/sec)   p_kst 6.129541e-01   p_cons 2.024590e-03   p_joint 5.382131e-02

Joint ci ratio: 2.068188e-02	ci left: 5.420267e-02	ci right 5.533698e-02	k: 33956	n:620000
Cons ci ratio: 1.103650e-01	ci left: 1.918549e-03	ci right 2.144209e-03	k: 1258	n:620000
KS ci ratio: 3.956092e-03	ci left: 6.117298e-01	ci right 6.141562e-01	k: 380025	n:620000
BAT2L1   620000 perm   355 sec   (1749 perm/sec)   p_kst 6.129435e-01   p_cons 2.029032e-03   p_joint 5.476774e-02

Joint ci ratio: 2.050598e-02	ci left: 5.426296e-02	ci right 5.538876e-02	k: 34539	n:630000
Cons ci ratio: 1.095417e-01	ci left: 1.917425e-03	ci right 2.141162e-03	k: 1277	n:630000
KS ci ratio: 3.925153e-03	ci left: 6.116689e-01	ci right 6.140761e-01	k: 386110	n:630000
BAT2L1   630000 perm   363 sec   (1735 perm/sec)   p_kst 6.128730e-01   p_cons 2.026984e-03   p_joint 5.482381e-02

Joint ci ratio: 2.035751e-02	ci left: 5.420478e-02	ci right 5.532113e-02	k: 35047	n:640000
Cons ci ratio: 1.090741e-01	ci left: 1.904182e-03	ci right 2.125365e-03	k: 1288	n:640000
KS ci ratio: 3.893594e-03	ci left: 6.117726e-01	ci right 6.141608e-01	k: 392299	n:640000
BAT2L1   640000 perm   371 sec   (1723 perm/sec)   p_kst 6.129672e-01   p_cons 2.012500e-03   p_joint 5.476094e-02

Joint ci ratio: 1.995959e-02	ci left: 5.545757e-02	ci right 5.657716e-02	k: 36410	n:650000
Cons ci ratio: 1.084870e-01	ci left: 1.895839e-03	ci right 2.114791e-03	k: 1302	n:650000
KS ci ratio: 3.863623e-03	ci left: 6.117700e-01	ci right 6.141397e-01	k: 398421	n:650000
BAT2L1   650000 perm   380 sec   (1710 perm/sec)   p_kst 6.129554e-01   p_cons 2.003077e-03   p_joint 5.601538e-02

Joint ci ratio: 2.001427e-02	ci left: 5.438031e-02	ci right 5.548118e-02	k: 36253	n:660000
Cons ci ratio: 1.075824e-01	ci left: 1.899547e-03	ci right 2.116983e-03	k: 1324	n:660000
KS ci ratio: 3.834947e-03	ci left: 6.116918e-01	ci right 6.140436e-01	k: 404493	n:660000
BAT2L1   660000 perm   389 sec   (1697 perm/sec)   p_kst 6.128682e-01   p_cons 2.006061e-03   p_joint 5.492879e-02

Joint ci ratio: 1.998016e-02	ci left: 5.378680e-02	ci right 5.487378e-02	k: 36400	n:670000
Cons ci ratio: 1.068592e-01	ci left: 1.897340e-03	ci right 2.112972e-03	k: 1342	n:670000
KS ci ratio: 3.806049e-03	ci left: 6.117220e-01	ci right 6.140561e-01	k: 410636	n:670000
BAT2L1   670000 perm   398 sec   (1685 perm/sec)   p_kst 6.128896e-01   p_cons 2.002985e-03   p_joint 5.432836e-02

Joint ci ratio: 2.066973e-02	ci left: 4.971585e-02	ci right 5.075564e-02	k: 34159	n:680000
Cons ci ratio: 1.061504e-01	ci left: 1.895204e-03	ci right 2.109074e-03	k: 1360	n:680000
KS ci ratio: 3.778274e-03	ci left: 6.116910e-01	ci right 6.140080e-01	k: 416738	n:680000
BAT2L1   680000 perm   407 sec   (1672 perm/sec)   p_kst 6.128500e-01   p_cons 2.000000e-03   p_joint 5.023382e-02

Joint ci ratio: 1.969168e-02	ci left: 5.377800e-02	ci right 5.484893e-02	k: 37475	n:690000
Cons ci ratio: 1.053407e-01	ci left: 1.897367e-03	ci right 2.109747e-03	k: 1381	n:690000
KS ci ratio: 3.749897e-03	ci left: 6.118133e-01	ci right 6.141133e-01	k: 422945	n:690000
BAT2L1   690000 perm   416 sec   (1660 perm/sec)   p_kst 6.129638e-01   p_cons 2.001449e-03   p_joint 5.431159e-02

Joint ci ratio: 1.983291e-02	ci left: 5.233413e-02	ci right 5.338386e-02	k: 37000	n:700000
Cons ci ratio: 1.046241e-01	ci left: 1.896692e-03	ci right 2.107463e-03	k: 1400	n:700000
KS ci ratio: 3.722899e-03	ci left: 6.118364e-01	ci right 6.141198e-01	k: 429085	n:700000
BAT2L1   700000 perm   425 sec   (1648 perm/sec)   p_kst 6.129786e-01   p_cons 2.000000e-03   p_joint 5.285714e-02

Joint ci ratio: 1.969402e-02	ci left: 5.233141e-02	ci right 5.337365e-02	k: 37524	n:710000
Cons ci ratio: 1.039218e-01	ci left: 1.896040e-03	ci right 2.105239e-03	k: 1419	n:710000
KS ci ratio: 3.696685e-03	ci left: 6.118321e-01	ci right 6.140994e-01	k: 435206	n:710000
BAT2L1   710000 perm   434 sec   (1637 perm/sec)   p_kst 6.129662e-01   p_cons 1.998592e-03   p_joint 5.285070e-02

Joint ci ratio: 2.016391e-02	ci left: 4.937053e-02	ci right 5.037754e-02	k: 35908	n:720000
Cons ci ratio: 1.033055e-01	ci left: 1.892706e-03	ci right 2.100223e-03	k: 1436	n:720000
KS ci ratio: 3.670652e-03	ci left: 6.118752e-01	ci right 6.141267e-01	k: 441361	n:720000
BAT2L1   720000 perm   443 sec   (1625 perm/sec)   p_kst 6.130014e-01   p_cons 1.994444e-03   p_joint 4.987222e-02

Joint ci ratio: 2.003046e-02	ci left: 4.934981e-02	ci right 5.034966e-02	k: 36389	n:730000
Cons ci ratio: 1.027354e-01	ci left: 1.888131e-03	ci right 2.093935e-03	k: 1452	n:730000
KS ci ratio: 3.645845e-03	ci left: 6.118281e-01	ci right 6.140641e-01	k: 447451	n:730000
BAT2L1   730000 perm   452 sec   (1614 perm/sec)   p_kst 6.129466e-01   p_cons 1.989041e-03   p_joint 4.984795e-02

Joint ci ratio: 1.989509e-02	ci left: 4.935119e-02	ci right 5.034423e-02	k: 36886	n:740000
Cons ci ratio: 1.020009e-01	ci left: 1.890268e-03	ci right 2.094743e-03	k: 1473	n:740000
KS ci ratio: 3.619894e-03	ci left: 6.119973e-01	ci right 6.142180e-01	k: 453700	n:740000
BAT2L1   740000 perm   462 sec   (1603 perm/sec)   p_kst 6.131081e-01   p_cons 1.990541e-03   p_joint 4.984595e-02

Joint ci ratio: 1.981996e-02	ci left: 4.907918e-02	ci right 5.006297e-02	k: 37177	n:750000
Cons ci ratio: 1.013839e-01	ci left: 1.888454e-03	ci right 2.091424e-03	k: 1491	n:750000
KS ci ratio: 3.595035e-03	ci left: 6.120900e-01	ci right 6.142958e-01	k: 459895	n:750000
BAT2L1   750000 perm   471 sec   (1592 perm/sec)   p_kst 6.131933e-01   p_cons 1.988000e-03   p_joint 4.956933e-02

Joint ci ratio: 2.743394e-02	ci left: 2.580283e-02	ci right 2.652184e-02	k: 19882	n:760000
Cons ci ratio: 1.005779e-01	ci left: 1.894387e-03	ci right 2.096281e-03	k: 1515	n:760000
KS ci ratio: 3.570334e-03	ci left: 6.122264e-01	ci right 6.144175e-01	k: 466125	n:760000
BAT2L1   760000 perm   481 sec   (1581 perm/sec)   p_kst 6.133224e-01   p_cons 1.993421e-03   p_joint 2.616053e-02

Joint ci ratio: 2.741185e-02	ci left: 2.551669e-02	ci right 2.622714e-02	k: 19920	n:770000
Cons ci ratio: 9.969359e-02	ci left: 1.903972e-03	ci right 2.104999e-03	k: 1542	n:770000
KS ci ratio: 3.546154e-03	ci left: 6.123567e-01	ci right 6.145333e-01	k: 472353	n:770000
BAT2L1   770000 perm   490 sec   (1570 perm/sec)   p_kst 6.134455e-01   p_cons 2.002597e-03   p_joint 2.587013e-02

Outputting figure to mutsig2_images.part000000000015/BAT2L1.3_6814_770000_0.61345_0.0020026_0.02587.png
                gene_name: BAT2L1
               theta_stop: 0.100 
                    nperm: 770000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.0020 
      ci_cons_bounds_left: 0.0019 
     ci_cons_bounds_right: 0.0021 
                  p_joint: 0.026 
     ci_joint_bounds_left: 0.026 
    ci_joint_bounds_right: 0.026 

Current progress: 59 percent done.
BAT4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.947870e-02	ci left: 1.276742e-01	ci right 1.411395e-01	k: 1343	n:10000
Cons ci ratio: 1.857217e-02	ci left: 8.089748e-01	ci right 8.242403e-01	k: 8167	n:10000
KS ci ratio: 1.601820e-01	ci left: 5.195823e-02	ci right 6.110226e-02	k: 564	n:10000
BAT4   10000 perm   1 sec   (6841 perm/sec)   p_kst 5.640000e-02   p_cons 8.167000e-01   p_joint 1.343000e-01

Joint ci ratio: 7.629437e-02	ci left: 1.121338e-01	ci right 1.210780e-01	k: 2331	n:20000
Cons ci ratio: 1.293657e-02	ci left: 8.157673e-01	ci right 8.264392e-01	k: 16423	n:20000
KS ci ratio: 1.153381e-01	ci left: 5.144255e-02	ci right 5.778772e-02	k: 1091	n:20000
BAT4   20000 perm   3 sec   (5883 perm/sec)   p_kst 5.455000e-02   p_cons 8.211500e-01   p_joint 1.165500e-01

Joint ci ratio: 6.184504e-02	ci left: 1.144356e-01	ci right 1.217718e-01	k: 3542	n:30000
Cons ci ratio: 1.054876e-02	ci left: 8.171527e-01	ci right 8.258516e-01	k: 24646	n:30000
KS ci ratio: 9.387118e-02	ci left: 5.234895e-02	ci right 5.753766e-02	k: 1647	n:30000
BAT4   30000 perm   5 sec   (5536 perm/sec)   p_kst 5.490000e-02   p_cons 8.215333e-01   p_joint 1.180667e-01

Outputting figure to mutsig2_images.part000000000015/BAT4.3_1079_30000_0.0549_0.82153_0.11807.png
                gene_name: BAT4
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.055 
        ci_ks_bounds_left: 0.052 
       ci_ks_bounds_right: 0.058 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 61 percent done.
BBS12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.123944e-02	ci left: 9.187348e-01	ci right 9.292167e-01	k: 9241	n:10000
KS ci ratio: 1.337314e-02	ci left: 8.896462e-01	ci right 9.017222e-01	k: 8958	n:10000
BBS12   10000 perm   2 sec   (5455 perm/sec)   p_kst 8.958000e-01   p_cons 9.241000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000015/BBS12.3_2137_10000_0.8958_0.9241_1.png
                gene_name: BBS12
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 64 percent done.
BCAM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.230215e-02	ci left: 1.772353e-01	ci right 1.925487e-01	k: 1848	n:10000
Cons ci ratio: 1.045991e-02	ci left: 9.285426e-01	ci right 9.384031e-01	k: 9336	n:10000
KS ci ratio: 1.642256e-01	ci left: 4.945836e-02	ci right 5.840374e-02	k: 538	n:10000
BCAM   10000 perm   2 sec   (5402 perm/sec)   p_kst 5.380000e-02   p_cons 9.336000e-01   p_joint 1.848000e-01

Joint ci ratio: 6.482964e-02	ci left: 1.495164e-01	ci right 1.595842e-01	k: 3090	n:20000
Cons ci ratio: 7.533346e-03	ci left: 9.276552e-01	ci right 9.347189e-01	k: 18625	n:20000
KS ci ratio: 1.151153e-01	ci left: 5.163709e-02	ci right 5.799312e-02	k: 1095	n:20000
BCAM   20000 perm   4 sec   (4854 perm/sec)   p_kst 5.475000e-02   p_cons 9.312500e-01   p_joint 1.545000e-01

Joint ci ratio: 5.638173e-02	ci left: 1.348403e-01	ci right 1.426965e-01	k: 4162	n:30000
Cons ci ratio: 6.138404e-03	ci left: 9.285829e-01	ci right 9.343332e-01	k: 27945	n:30000
KS ci ratio: 9.528656e-02	ci left: 5.084996e-02	ci right 5.597030e-02	k: 1601	n:30000
BCAM   30000 perm   6 sec   (4643 perm/sec)   p_kst 5.336667e-02   p_cons 9.315000e-01   p_joint 1.387333e-01

Outputting figure to mutsig2_images.part000000000015/BCAM.3_1951_30000_0.053367_0.9315_0.13873.png
                gene_name: BCAM
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.053 
        ci_ks_bounds_left: 0.051 
       ci_ks_bounds_right: 0.056 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 66 percent done.
BACE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.063929e-02	ci left: 4.720631e-01	ci right 4.917475e-01	k: 4819	n:10000
Cons ci ratio: 2.400250e-02	ci left: 7.184560e-01	ci right 7.360115e-01	k: 7273	n:10000
KS ci ratio: 5.391754e-02	ci left: 3.363745e-01	ci right 3.551154e-01	k: 3457	n:10000
BACE2   10000 perm   2 sec   (6182 perm/sec)   p_kst 3.457000e-01   p_cons 7.273000e-01   p_joint 4.819000e-01

Outputting figure to mutsig2_images.part000000000015/BACE2.2_1593_10000_0.3457_0.7273_0.4819.png
                gene_name: BACE2
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 68 percent done.
BAG5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.938760e-03	ci left: 9.879601e-01	ci right 9.919467e-01	k: 9901	n:10000
Cons ci ratio: 4.858565e-02	ci left: 3.846041e-01	ci right 4.038576e-01	k: 3942	n:10000
KS ci ratio: 4.471269e-02	ci left: 4.247549e-01	ci right 4.442833e-01	k: 4345	n:10000
BAG5   10000 perm   2 sec   (6268 perm/sec)   p_kst 4.345000e-01   p_cons 3.942000e-01   p_joint 9.901000e-01

Outputting figure to mutsig2_images.part000000000015/BAG5.2_1475_10000_0.4345_0.3942_0.9901.png
                gene_name: BAG5
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 70 percent done.
BAIAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.585663e-02	ci left: 6.876848e-01	ci right 7.058004e-01	k: 6968	n:10000
Cons ci ratio: 1.245959e-02	ci left: 9.024739e-01	ci right 9.138870e-01	k: 9083	n:10000
KS ci ratio: 3.930400e-02	ci left: 4.887518e-01	ci right 5.084490e-01	k: 4986	n:10000
BAIAP2   10000 perm   2 sec   (6311 perm/sec)   p_kst 4.986000e-01   p_cons 9.083000e-01   p_joint 6.968000e-01

Outputting figure to mutsig2_images.part000000000015/BAIAP2.2_1808_10000_0.4986_0.9083_0.6968.png
                gene_name: BAIAP2
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 73 percent done.
BAIAP2L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.956342e-02	ci left: 6.278885e-01	ci right 6.468314e-01	k: 6374	n:10000
KS ci ratio: 3.743116e-02	ci left: 5.131551e-01	ci right 5.328315e-01	k: 5230	n:10000
BAIAP2L1   10000 perm   2 sec   (6233 perm/sec)   p_kst 5.230000e-01   p_cons 6.374000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000015/BAIAP2L1.2_1592_10000_0.523_0.6374_1.png
                gene_name: BAIAP2L1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
BAMBI
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.739590e-02	ci left: 1.325692e-01	ci right 1.462416e-01	k: 1393	n:10000
Cons ci ratio: 1.734323e-01	ci left: 4.437162e-02	ci right 5.289379e-02	k: 485	n:10000
KS ci ratio: 3.856436e-02	ci left: 4.982503e-01	ci right 5.179450e-01	k: 5081	n:10000
BAMBI   10000 perm   1 sec   (6760 perm/sec)   p_kst 5.081000e-01   p_cons 4.850000e-02   p_joint 1.393000e-01

Joint ci ratio: 6.540627e-02	ci left: 1.472474e-01	ci right 1.572539e-01	k: 3044	n:20000
Cons ci ratio: 1.245349e-01	ci left: 4.425346e-02	ci right 5.017908e-02	k: 943	n:20000
KS ci ratio: 2.689182e-02	ci left: 5.081469e-01	ci right 5.220487e-01	k: 10302	n:20000
BAMBI   20000 perm   3 sec   (5852 perm/sec)   p_kst 5.151000e-01   p_cons 4.715000e-02   p_joint 1.522000e-01

Joint ci ratio: 6.690861e-02	ci left: 9.922113e-02	ci right 1.061227e-01	k: 3079	n:30000
Cons ci ratio: 1.020239e-01	ci left: 4.450233e-02	ci right 4.931923e-02	k: 1406	n:30000
KS ci ratio: 2.191223e-02	ci left: 5.104604e-01	ci right 5.218032e-01	k: 15484	n:30000
BAMBI   30000 perm   5 sec   (5518 perm/sec)   p_kst 5.161333e-01   p_cons 4.686667e-02   p_joint 1.026333e-01

Joint ci ratio: 5.364327e-02	ci left: 1.146067e-01	ci right 1.209489e-01	k: 4710	n:40000
Cons ci ratio: 8.716774e-02	ci left: 4.602343e-02	ci right 5.024248e-02	k: 1924	n:40000
KS ci ratio: 1.889746e-02	ci left: 5.133147e-01	ci right 5.231327e-01	k: 20729	n:40000
BAMBI   40000 perm   8 sec   (5296 perm/sec)   p_kst 5.182250e-01   p_cons 4.810000e-02   p_joint 1.177500e-01

Outputting figure to mutsig2_images.part000000000015/BAMBI.2_795_40000_0.51823_0.0481_0.11775.png
                gene_name: BAMBI
               theta_stop: 0.087 
                    nperm: 40000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.048 
      ci_cons_bounds_left: 0.046 
     ci_cons_bounds_right: 0.050 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 77 percent done.
BANP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.967923e-02	ci left: 2.319523e-01	ci right 2.487992e-01	k: 2403	n:10000
Cons ci ratio: 8.921899e-02	ci left: 1.545332e-01	ci right 1.690644e-01	k: 1617	n:10000
KS ci ratio: 1.032853e-01	ci left: 1.193599e-01	ci right 1.324588e-01	k: 1258	n:10000
BANP   10000 perm   2 sec   (6133 perm/sec)   p_kst 1.258000e-01   p_cons 1.617000e-01   p_joint 2.403000e-01

Joint ci ratio: 5.051673e-02	ci left: 2.255201e-01	ci right 2.372581e-01	k: 4627	n:20000
Cons ci ratio: 5.915100e-02	ci left: 1.746973e-01	ci right 1.853959e-01	k: 3600	n:20000
KS ci ratio: 7.273787e-02	ci left: 1.221687e-01	ci right 1.314401e-01	k: 2535	n:20000
BANP   20000 perm   4 sec   (5377 perm/sec)   p_kst 1.267500e-01   p_cons 1.800000e-01   p_joint 2.313500e-01

Outputting figure to mutsig2_images.part000000000015/BANP.2_1663_20000_0.12675_0.18_0.23135.png
                gene_name: BANP
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 80 percent done.
BARHL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.019685e-01	ci left: 3.262466e-02	ci right 4.004861e-02	k: 362	n:10000
Cons ci ratio: 1.051569e-01	ci left: 1.155484e-01	ci right 1.284727e-01	k: 1219	n:10000
KS ci ratio: 7.283413e-02	ci left: 2.163531e-01	ci right 2.328076e-01	k: 2245	n:10000
BARHL2   10000 perm   2 sec   (6477 perm/sec)   p_kst 2.245000e-01   p_cons 1.219000e-01   p_joint 3.620000e-02

Joint ci ratio: 1.112477e-01	ci left: 5.518946e-02	ci right 6.173965e-02	k: 1168	n:20000
Cons ci ratio: 7.511428e-02	ci left: 1.153301e-01	ci right 1.243808e-01	k: 2396	n:20000
KS ci ratio: 5.068775e-02	ci left: 2.243309e-01	ci right 2.360477e-01	k: 4603	n:20000
BARHL2   20000 perm   4 sec   (5622 perm/sec)   p_kst 2.301500e-01   p_cons 1.198000e-01   p_joint 5.840000e-02

Joint ci ratio: 1.094551e-01	ci left: 3.875160e-02	ci right 4.327117e-02	k: 1229	n:30000
Cons ci ratio: 6.126802e-02	ci left: 1.163759e-01	ci right 1.237645e-01	k: 3601	n:30000
KS ci ratio: 4.128557e-02	ci left: 2.262733e-01	ci right 2.358455e-01	k: 6931	n:30000
BARHL2   30000 perm   6 sec   (5314 perm/sec)   p_kst 2.310333e-01   p_cons 1.200333e-01   p_joint 4.096667e-02

Joint ci ratio: 5.982681e-02	ci left: 9.401784e-02	ci right 9.984083e-02	k: 3876	n:40000
Cons ci ratio: 5.284538e-02	ci left: 1.177203e-01	ci right 1.241349e-01	k: 4836	n:40000
KS ci ratio: 3.572341e-02	ci left: 2.272246e-01	ci right 2.355145e-01	k: 9254	n:40000
BARHL2   40000 perm   8 sec   (5112 perm/sec)   p_kst 2.313500e-01   p_cons 1.209000e-01   p_joint 9.690000e-02

Outputting figure to mutsig2_images.part000000000015/BARHL2.2_1176_40000_0.23135_0.1209_0.0969.png
                gene_name: BARHL2
               theta_stop: 0.060 
                    nperm: 40000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.097 
     ci_joint_bounds_left: 0.094 
    ci_joint_bounds_right: 0.100 

Current progress: 82 percent done.
BARX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.401542e-02	ci left: 5.606285e-01	ci right 5.801305e-01	k: 5704	n:10000
Cons ci ratio: 9.141221e-03	ci left: 9.439858e-01	ci right 9.527507e-01	k: 9485	n:10000
KS ci ratio: 1.466274e-01	ci left: 6.179002e-02	ci right 7.166421e-02	k: 666	n:10000
BARX2   10000 perm   1 sec   (7014 perm/sec)   p_kst 6.660000e-02   p_cons 9.485000e-01   p_joint 5.704000e-01

Joint ci ratio: 1.153279e-02	ci left: 8.474586e-01	ci right 8.573387e-01	k: 17049	n:20000
Cons ci ratio: 6.510750e-03	ci left: 9.445752e-01	ci right 9.507938e-01	k: 18955	n:20000
KS ci ratio: 1.050398e-01	ci left: 6.167058e-02	ci right 6.855652e-02	k: 1301	n:20000
BARX2   20000 perm   3 sec   (6026 perm/sec)   p_kst 6.505000e-02   p_cons 9.477500e-01   p_joint 8.524500e-01

Joint ci ratio: 1.740826e-02	ci left: 6.227692e-01	ci right 6.337393e-01	k: 18848	n:30000
Cons ci ratio: 5.752816e-03	ci left: 9.365726e-01	ci right 9.420087e-01	k: 28180	n:30000
KS ci ratio: 8.411855e-02	ci left: 6.465365e-02	ci right 7.036379e-02	k: 2024	n:30000
BARX2   30000 perm   5 sec   (5670 perm/sec)   p_kst 6.746667e-02   p_cons 9.393333e-01   p_joint 6.282667e-01

Outputting figure to mutsig2_images.part000000000015/BARX2.2_856_30000_0.067467_0.93933_0.62827.png
                gene_name: BARX2
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.067 
        ci_ks_bounds_left: 0.065 
       ci_ks_bounds_right: 0.070 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.63 

Current progress: 84 percent done.
BBOX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.487514e-02	ci left: 1.682863e-01	ci right 1.833030e-01	k: 1757	n:10000
Cons ci ratio: 1.510425e-01	ci left: 5.831582e-02	ci right 6.794061e-02	k: 630	n:10000
KS ci ratio: 1.143829e-02	ci left: 9.161579e-01	ci right 9.267950e-01	k: 9216	n:10000
BBOX1   10000 perm   1 sec   (6934 perm/sec)   p_kst 9.216000e-01   p_cons 6.300000e-02   p_joint 1.757000e-01

Joint ci ratio: 9.902033e-03	ci left: 8.823784e-01	ci right 8.912088e-01	k: 17737	n:20000
Cons ci ratio: 1.037668e-01	ci left: 6.313395e-02	ci right 7.009269e-02	k: 1331	n:20000
KS ci ratio: 8.052736e-03	ci left: 9.184011e-01	ci right 9.258757e-01	k: 18444	n:20000
BBOX1   20000 perm   3 sec   (5912 perm/sec)   p_kst 9.222000e-01   p_cons 6.655000e-02   p_joint 8.868500e-01

Joint ci ratio: 8.012663e-03	ci left: 8.850192e-01	ci right 8.921721e-01	k: 26659	n:30000
Cons ci ratio: 8.463514e-02	ci left: 6.390207e-02	ci right 6.958219e-02	k: 2001	n:30000
KS ci ratio: 6.608079e-03	ci left: 9.183649e-01	ci right 9.244865e-01	k: 27644	n:30000
BBOX1   30000 perm   5 sec   (5543 perm/sec)   p_kst 9.214667e-01   p_cons 6.670000e-02   p_joint 8.886333e-01

Outputting figure to mutsig2_images.part000000000015/BBOX1.2_1192_30000_0.92147_0.0667_0.88863.png
                gene_name: BBOX1
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.067 
      ci_cons_bounds_left: 0.064 
     ci_cons_bounds_right: 0.070 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.89 

Current progress: 86 percent done.
BBS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.733862e-02	ci left: 2.445023e-01	ci right 2.616417e-01	k: 2530	n:10000
Cons ci ratio: 3.628610e-03	ci left: 9.896106e-01	ci right 9.932945e-01	k: 9916	n:10000
KS ci ratio: 1.296954e-01	ci left: 7.824692e-02	ci right 8.919702e-02	k: 836	n:10000
BBS2   10000 perm   2 sec   (5985 perm/sec)   p_kst 8.360000e-02   p_cons 9.916000e-01   p_joint 2.530000e-01

Joint ci ratio: 3.302494e-03	ci left: 9.843270e-01	ci right 9.876295e-01	k: 19721	n:20000
Cons ci ratio: 2.685264e-03	ci left: 9.893244e-01	ci right 9.920300e-01	k: 19815	n:20000
KS ci ratio: 9.094175e-02	ci left: 8.112153e-02	ci right 8.889961e-02	k: 1699	n:20000
BBS2   20000 perm   4 sec   (5257 perm/sec)   p_kst 8.495000e-02   p_cons 9.907500e-01   p_joint 9.860500e-01

Outputting figure to mutsig2_images.part000000000015/BBS2.2_2234_20000_0.08495_0.99075_0.98605.png
                gene_name: BBS2
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.085 
        ci_ks_bounds_left: 0.081 
       ci_ks_bounds_right: 0.089 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 89 percent done.
BCAP29
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.839835e-02	ci left: 8.118192e-01	ci right 8.269942e-01	k: 8195	n:10000
Cons ci ratio: 5.731428e-02	ci left: 3.094718e-01	ci right 3.278340e-01	k: 3186	n:10000
KS ci ratio: 2.601579e-02	ci left: 6.850639e-01	ci right 7.032228e-01	k: 6942	n:10000
BCAP29   10000 perm   2 sec   (6544 perm/sec)   p_kst 6.942000e-01   p_cons 3.186000e-01   p_joint 8.195000e-01

Outputting figure to mutsig2_images.part000000000015/BCAP29.2_1079_10000_0.6942_0.3186_0.8195.png
                gene_name: BCAP29
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 91 percent done.
BCAT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.902955e-02	ci left: 8.014606e-01	ci right 8.169589e-01	k: 8093	n:10000
KS ci ratio: 1.628172e-02	ci left: 8.458050e-01	ci right 8.597888e-01	k: 8529	n:10000
BCAT2   10000 perm   1 sec   (6749 perm/sec)   p_kst 8.529000e-01   p_cons 8.093000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000015/BCAT2.2_1223_10000_0.8529_0.8093_1.png
                gene_name: BCAT2
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
BCCIP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.242237e-02	ci left: 4.506935e-01	ci right 4.703295e-01	k: 4605	n:10000
Cons ci ratio: 2.035121e-02	ci left: 7.795518e-01	ci right 7.956803e-01	k: 7877	n:10000
KS ci ratio: 5.886768e-02	ci left: 2.980661e-01	ci right 3.162464e-01	k: 3071	n:10000
BCCIP   10000 perm   1 sec   (6761 perm/sec)   p_kst 3.071000e-01   p_cons 7.877000e-01   p_joint 4.605000e-01

Outputting figure to mutsig2_images.part000000000015/BCCIP.2_1205_10000_0.3071_0.7877_0.4605.png
                gene_name: BCCIP
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 95 percent done.
BCKDHB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.555591e-03	ci left: 9.774889e-01	ci right 9.830263e-01	k: 9804	n:10000
Cons ci ratio: 5.571689e-02	ci left: 3.217772e-01	ci right 3.403213e-01	k: 3310	n:10000
KS ci ratio: 2.643313e-02	ci left: 6.782109e-01	ci right 6.964798e-01	k: 6874	n:10000
BCKDHB   10000 perm   2 sec   (6407 perm/sec)   p_kst 6.874000e-01   p_cons 3.310000e-01   p_joint 9.804000e-01

Outputting figure to mutsig2_images.part000000000015/BCKDHB.2_1219_10000_0.6874_0.331_0.9804.png
                gene_name: BCKDHB
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 98 percent done.
BCL2A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.163782e-02	ci left: 3.560517e-01	ci right 3.750267e-01	k: 3655	n:10000
KS ci ratio: 4.473089e-02	ci left: 4.245555e-01	ci right 4.440828e-01	k: 4343	n:10000
BCL2A1   10000 perm   1 sec   (7227 perm/sec)   p_kst 4.343000e-01   p_cons 3.655000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000015/BCL2A1.2_596_10000_0.4343_0.3655_1.png
                gene_name: BCL2A1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000015
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 15 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1544>
Subject: Job 8003879: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1544>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000016> was used as the working directory.
Started at Sun Nov 11 15:03:46 2012
Results reported at Sun Nov 11 15:53:42 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000016.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000016.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 16  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000016.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   3354.75 sec.
    Max Memory :      4661 MB
    Max Swap   :      7102 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
16
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 16
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 16: processing genes 1358 - 1448
Calculating significance of each gene.
Using projection method.
1358	BCL2L14	5.543238e-01
1359	BCL2L15	4.662582e-01
1360	BCL2L2	1
1361	BCL3	1
1362	BCL6	3.054540e-01
1363	BCL6B	1
1364	BCL7A	5.886518e-01
1365	BCL7B	1
1366	BCL7C	1
1367	BCL9	9.587557e-01
1368	BCL9L	7.956389e-01
1369	BCLAF1	9.766857e-01
1370	BCMO1	8.967176e-01
1371	BCO2	8.244726e-01
1372	BCOR	4.786322e-01
1373	BCORL1	9.001420e-01
1374	BCR	9.706208e-01
1375	BCS1L	1
1376	BDH1	7.640264e-02
1377	BDH2	1
1378	BDKRB1	4.516915e-01
1379	BDKRB2	2.905384e-01
1380	BDNF	7.446871e-01
1381	BDP1	1
1382	BECN1	6.043166e-01
1383	BEGAIN	1
1384	BEND2	2.881174e-01
1385	BEND3	4.650729e-01
1386	BEND4	1
1387	BEND5	1
1388	BEND6	6.162903e-01
1389	BEND7	1
1390	BEST1	6.837678e-01
1391	BEST2	1
1392	BEST3	4.814414e-01
1393	BEST4	3.841981e-01
1394	BET1	1
1395	BET1L	1
1396	BEX1	3.629414e-02
1397	BEX2	1
1398	BEX4	1.651605e-01
1399	BEX5	1
1400	BFAR	1
1401	BFSP1	3.565751e-01
1402	BFSP2	7.211114e-01
1403	BGLAP	1
1404	BGN	7.123152e-01
1405	BHLHB9	4.390745e-01
1406	BHLHE22	4.055245e-01
1407	BHLHE23	1
1408	BHLHE40	7.215412e-01
1409	BHLHE41	6.355934e-02
1410	BHMT	5.062850e-01
1411	BHMT2	7.997930e-01
1412	BICC1	7.275204e-01
1413	BICD1	9.519714e-01
1414	BICD2	8.060949e-01
1415	BID	1
1416	BIK	1
1417	BIN1	1
1418	BIN2	6.474451e-01
1419	BIN3	1
1420	BIRC2	9.130093e-01
1421	BIRC3	6.345306e-01
1422	BIRC5	1
1423	BIRC6	1.000000e+00
1424	BIRC7	1.584750e-01
1425	BIRC8	2.007805e-01
1426	BIVM	8.434106e-01
1427	BLCAP	1.218389e-01
1428	BLID	6.715283e-02
1429	BLK	7.222509e-01
1430	BLM	9.554108e-01
1431	BLMH	8.319753e-01
1432	BLNK	6.817094e-01
1433	BLOC1S1	1
1434	BLOC1S2	1
1435	BLOC1S3	1
1436	BLVRA	2.709230e-01
1437	BLVRB	1
1438	BLZF1	6.508948e-01
1439	BMF	1
1440	BMI1	1
1441	BMP1	1
1442	BMP10	6.652132e-01
1443	BMP15	2.920193e-01
1444	BMP2	1
1445	BMP2K	9.579272e-01
1446	BMP3	2.480911e-01
1447	BMP4	6.343547e-01
1448	BMP5	5.369193e-04
Done

Running MutSig 2:
Scatter job 16: processing genes 1358 - 1448
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
BIRC6
Processing conservation and coverage...
67% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.023926e-01	ci left: 7.512676e-03	ci right 1.138119e-02	k: 93	n:10000
Cons ci ratio: 1.424392e-01	ci left: 6.536500e-02	ci right 7.548697e-02	k: 703	n:10000
KS ci ratio: 2.954286e-01	ci left: 1.474309e-02	ci right 1.994354e-02	k: 172	n:10000
BIRC6   10000 perm   6 sec   (1809 perm/sec)   p_kst 1.720000e-02   p_cons 7.030000e-02   p_joint 9.300000e-03

Joint ci ratio: 2.564170e-01	ci left: 1.006870e-02	ci right 1.307582e-02	k: 230	n:20000
Cons ci ratio: 9.943628e-02	ci left: 6.850386e-02	ci right 7.572114e-02	k: 1441	n:20000
KS ci ratio: 2.010635e-01	ci left: 1.677277e-02	ci right 2.056900e-02	k: 372	n:20000
BIRC6   20000 perm   15 sec   (1348 perm/sec)   p_kst 1.860000e-02   p_cons 7.205000e-02   p_joint 1.150000e-02

Joint ci ratio: 1.827789e-01	ci left: 1.371864e-02	ci right 1.650975e-02	k: 452	n:30000
Cons ci ratio: 8.068853e-02	ci left: 6.998298e-02	ci right 7.590004e-02	k: 2187	n:30000
KS ci ratio: 1.627664e-01	ci left: 1.742115e-02	ci right 2.053966e-02	k: 568	n:30000
BIRC6   30000 perm   21 sec   (1461 perm/sec)   p_kst 1.893333e-02   p_cons 7.290000e-02   p_joint 1.506667e-02

Joint ci ratio: 1.871401e-01	ci left: 9.834062e-03	ci right 1.188788e-02	k: 433	n:40000
Cons ci ratio: 7.049739e-02	ci left: 6.921499e-02	ci right 7.429739e-02	k: 2869	n:40000
KS ci ratio: 1.412136e-01	ci left: 1.756392e-02	ci right 2.025657e-02	k: 755	n:40000
BIRC6   40000 perm   26 sec   (1526 perm/sec)   p_kst 1.887500e-02   p_cons 7.172500e-02   p_joint 1.082500e-02

Joint ci ratio: 1.793855e-01	ci left: 8.610978e-03	ci right 1.032670e-02	k: 472	n:50000
Cons ci ratio: 6.311653e-02	ci left: 6.935503e-02	ci right 7.389486e-02	k: 3580	n:50000
KS ci ratio: 1.263738e-01	ci left: 1.768566e-02	ci right 2.009066e-02	k: 943	n:50000
BIRC6   50000 perm   32 sec   (1550 perm/sec)   p_kst 1.886000e-02   p_cons 7.160000e-02   p_joint 9.440000e-03

Joint ci ratio: 1.584316e-01	ci left: 9.299348e-03	ci right 1.091523e-02	k: 605	n:60000
Cons ci ratio: 5.774190e-02	ci left: 6.926989e-02	ci right 7.340502e-02	k: 4279	n:60000
KS ci ratio: 1.169407e-01	ci left: 1.730729e-02	ci right 1.947299e-02	k: 1102	n:60000
BIRC6   60000 perm   38 sec   (1571 perm/sec)   p_kst 1.836667e-02   p_cons 7.131667e-02   p_joint 1.008333e-02

Joint ci ratio: 1.608387e-01	ci left: 7.737203e-03	ci right 9.104016e-03	k: 588	n:70000
Cons ci ratio: 5.354725e-02	ci left: 6.920688e-02	ci right 7.302877e-02	k: 4977	n:70000
KS ci ratio: 1.081307e-01	ci left: 1.743119e-02	ci right 1.943759e-02	k: 1289	n:70000
BIRC6   70000 perm   44 sec   (1586 perm/sec)   p_kst 1.841429e-02   p_cons 7.110000e-02   p_joint 8.400000e-03

Joint ci ratio: 1.374641e-01	ci left: 9.370380e-03	ci right 1.076549e-02	k: 804	n:80000
Cons ci ratio: 4.707089e-02	ci left: 7.789413e-02	ci right 8.166141e-02	k: 6381	n:80000
KS ci ratio: 1.022220e-01	ci left: 1.712653e-02	ci right 1.898366e-02	k: 1443	n:80000
BIRC6   80000 perm   50 sec   (1595 perm/sec)   p_kst 1.803750e-02   p_cons 7.976250e-02   p_joint 1.005000e-02

Joint ci ratio: 1.053320e-01	ci left: 1.435666e-02	ci right 1.596370e-02	k: 1363	n:90000
Cons ci ratio: 4.441167e-02	ci left: 7.789464e-02	ci right 8.144362e-02	k: 7169	n:90000
KS ci ratio: 9.654250e-02	ci left: 1.711971e-02	ci right 1.886711e-02	k: 1618	n:90000
BIRC6   90000 perm   56 sec   (1595 perm/sec)   p_kst 1.797778e-02   p_cons 7.965556e-02   p_joint 1.514444e-02

Joint ci ratio: 9.967848e-02	ci left: 1.447029e-02	ci right 1.599802e-02	k: 1522	n:100000
Cons ci ratio: 4.217482e-02	ci left: 7.784046e-02	ci right 8.120397e-02	k: 7951	n:100000
KS ci ratio: 9.143028e-02	ci left: 1.722408e-02	ci right 1.888404e-02	k: 1804	n:100000
BIRC6   100000 perm   63 sec   (1593 perm/sec)   p_kst 1.804000e-02   p_cons 7.951000e-02   p_joint 1.522000e-02

Outputting figure to mutsig2_images.part000000000016/BIRC6.25_14870_100000_0.01804_0.07951_0.01522.png
                gene_name: BIRC6
               theta_stop: 0.100 
                    nperm: 100000 
                     p_ks: 0.018 
        ci_ks_bounds_left: 0.017 
       ci_ks_bounds_right: 0.019 
                   p_cons: 0.080 
      ci_cons_bounds_left: 0.078 
     ci_cons_bounds_right: 0.081 
                  p_joint: 0.015 
     ci_joint_bounds_left: 0.014 
    ci_joint_bounds_right: 0.016 

Current progress: 3 percent done.
BCLAF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.078848e-02	ci left: 7.722565e-01	ci right 7.885799e-01	k: 7805	n:10000
KS ci ratio: 1.343746e-02	ci left: 8.887237e-01	ci right 9.008452e-01	k: 8949	n:10000
BCLAF1   10000 perm   3 sec   (3986 perm/sec)   p_kst 8.949000e-01   p_cons 7.805000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000016/BCLAF1.17_2807_10000_0.8949_0.7805_1.png
                gene_name: BCLAF1
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 5 percent done.
BDP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.330145e-02	ci left: 8.906714e-01	ci right 9.026964e-01	k: 8968	n:10000
Cons ci ratio: 2.661776e-02	ci left: 6.751883e-01	ci right 6.935042e-01	k: 6844	n:10000
KS ci ratio: 2.955702e-02	ci left: 6.279891e-01	ci right 6.469308e-01	k: 6375	n:10000
BDP1   10000 perm   3 sec   (3243 perm/sec)   p_kst 6.375000e-01   p_cons 6.844000e-01   p_joint 8.968000e-01

Outputting figure to mutsig2_images.part000000000016/BDP1.11_8031_10000_0.6375_0.6844_0.8968.png
                gene_name: BDP1
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 8 percent done.
BMP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.182907e-02	ci left: 9.110088e-01	ci right 9.219471e-01	k: 9166	n:10000
KS ci ratio: 1.686766e-02	ci left: 8.365345e-01	ci right 8.508647e-01	k: 8438	n:10000
BMP5   10000 perm   2 sec   (4830 perm/sec)   p_kst 8.438000e-01   p_cons 9.166000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000016/BMP5.8_1393_10000_0.8438_0.9166_1.png
                gene_name: BMP5
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 10 percent done.
BCOR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.354280e-01	ci left: 7.204238e-02	ci right 8.260541e-02	k: 772	n:10000
Cons ci ratio: 1.154273e-01	ci left: 9.740099e-02	ci right 1.094311e-01	k: 1033	n:10000
KS ci ratio: 1.097134e-01	ci left: 1.069558e-01	ci right 1.194705e-01	k: 1131	n:10000
BCOR   10000 perm   3 sec   (3530 perm/sec)   p_kst 1.131000e-01   p_cons 1.033000e-01   p_joint 7.720000e-02

Joint ci ratio: 9.380531e-02	ci left: 7.652099e-02	ci right 8.410155e-02	k: 1605	n:20000
Cons ci ratio: 8.053930e-02	ci left: 1.016188e-01	ci right 1.101961e-01	k: 2117	n:20000
KS ci ratio: 7.963807e-02	ci left: 1.037306e-01	ci right 1.123837e-01	k: 2160	n:20000
BCOR   20000 perm   6 sec   (3444 perm/sec)   p_kst 1.080000e-01   p_cons 1.058500e-01   p_joint 8.025000e-02

Outputting figure to mutsig2_images.part000000000016/BCOR.7_5324_20000_0.108_0.10585_0.08025.png
                gene_name: BCOR
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.080 
     ci_joint_bounds_left: 0.077 
    ci_joint_bounds_right: 0.084 

Current progress: 13 percent done.
BCORL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.180047e-02	ci left: 2.779488e-01	ci right 2.957755e-01	k: 2868	n:10000
Cons ci ratio: 1.439852e-01	ci left: 6.401182e-02	ci right 7.404101e-02	k: 689	n:10000
KS ci ratio: 1.869607e-02	ci left: 8.069435e-01	ci right 8.222728e-01	k: 8147	n:10000
BCORL1   10000 perm   3 sec   (3994 perm/sec)   p_kst 8.147000e-01   p_cons 6.890000e-02   p_joint 2.868000e-01

Joint ci ratio: 4.358788e-02	ci left: 2.816310e-01	ci right 2.942307e-01	k: 5758	n:20000
Cons ci ratio: 1.030230e-01	ci left: 6.401222e-02	ci right 7.101415e-02	k: 1349	n:20000
KS ci ratio: 1.374471e-02	ci left: 7.970653e-01	ci right 8.081466e-01	k: 16053	n:20000
BCORL1   20000 perm   6 sec   (3617 perm/sec)   p_kst 8.026500e-01   p_cons 6.745000e-02   p_joint 2.879000e-01

Joint ci ratio: 3.821124e-02	ci left: 2.547120e-01	ci right 2.646679e-01	k: 7790	n:30000
Cons ci ratio: 8.396303e-02	ci left: 6.488241e-02	ci right 7.060165e-02	k: 2031	n:30000
KS ci ratio: 1.126196e-02	ci left: 7.969743e-01	ci right 8.060339e-01	k: 24046	n:30000
BCORL1   30000 perm   9 sec   (3489 perm/sec)   p_kst 8.015333e-01   p_cons 6.770000e-02   p_joint 2.596667e-01

Outputting figure to mutsig2_images.part000000000016/BCORL1.7_5410_30000_0.80153_0.0677_0.25967.png
                gene_name: BCORL1
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.068 
      ci_cons_bounds_left: 0.065 
     ci_cons_bounds_right: 0.071 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 15 percent done.
BEND4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.964204e-01	ci left: 3.452820e-02	ci right 4.214376e-02	k: 382	n:10000
Cons ci ratio: 3.751414e-01	ci left: 8.776964e-03	ci right 1.291541e-02	k: 107	n:10000
KS ci ratio: 6.239472e-02	ci left: 2.740864e-01	ci right 2.918402e-01	k: 2829	n:10000
BEND4   10000 perm   2 sec   (5118 perm/sec)   p_kst 2.829000e-01   p_cons 1.070000e-02   p_joint 3.820000e-02

Joint ci ratio: 1.565382e-01	ci left: 2.801598e-02	ci right 3.282183e-02	k: 607	n:20000
Cons ci ratio: 2.499297e-01	ci left: 1.063101e-02	ci right 1.371326e-02	k: 242	n:20000
KS ci ratio: 4.470328e-02	ci left: 2.714510e-01	ci right 2.839136e-01	k: 5553	n:20000
BEND4   20000 perm   4 sec   (4559 perm/sec)   p_kst 2.776500e-01   p_cons 1.210000e-02   p_joint 3.035000e-02

Joint ci ratio: 1.109208e-01	ci left: 3.774564e-02	ci right 4.221067e-02	k: 1198	n:30000
Cons ci ratio: 2.011555e-01	ci left: 1.124182e-02	ci right 1.378722e-02	k: 374	n:30000
KS ci ratio: 3.659135e-02	ci left: 2.716097e-01	ci right 2.817669e-01	k: 8300	n:30000
BEND4   30000 perm   7 sec   (4335 perm/sec)   p_kst 2.766667e-01   p_cons 1.246667e-02   p_joint 3.993333e-02

Joint ci ratio: 9.410529e-02	ci left: 3.961521e-02	ci right 4.355170e-02	k: 1662	n:40000
Cons ci ratio: 1.733310e-01	ci left: 1.152992e-02	ci right 1.374168e-02	k: 504	n:40000
KS ci ratio: 3.166731e-02	ci left: 2.725685e-01	ci right 2.813639e-01	k: 11078	n:40000
BEND4   40000 perm   10 sec   (4197 perm/sec)   p_kst 2.769500e-01   p_cons 1.260000e-02   p_joint 4.155000e-02

Joint ci ratio: 8.399676e-02	ci left: 3.998406e-02	ci right 4.350940e-02	k: 2086	n:50000
Cons ci ratio: 1.563227e-01	ci left: 1.144840e-02	ci right 1.340881e-02	k: 620	n:50000
KS ci ratio: 2.837477e-02	ci left: 2.723238e-01	ci right 2.801822e-01	k: 13812	n:50000
BEND4   50000 perm   12 sec   (4088 perm/sec)   p_kst 2.762400e-01   p_cons 1.240000e-02   p_joint 4.172000e-02

Joint ci ratio: 8.218277e-02	ci left: 3.502993e-02	ci right 3.804845e-02	k: 2191	n:60000
Cons ci ratio: 1.417618e-01	ci left: 1.169064e-02	ci right 1.349029e-02	k: 754	n:60000
KS ci ratio: 2.584391e-02	ci left: 2.735711e-01	ci right 2.807505e-01	k: 16629	n:60000
BEND4   60000 perm   15 sec   (4009 perm/sec)   p_kst 2.771500e-01   p_cons 1.256667e-02   p_joint 3.651667e-02

Joint ci ratio: 6.790510e-02	ci left: 4.389765e-02	ci right 4.699732e-02	k: 3180	n:70000
Cons ci ratio: 1.297500e-01	ci left: 1.203567e-02	ci right 1.371935e-02	k: 900	n:70000
KS ci ratio: 2.420074e-02	ci left: 2.693178e-01	ci right 2.759296e-01	k: 19083	n:70000
BEND4   70000 perm   18 sec   (3942 perm/sec)   p_kst 2.726143e-01   p_cons 1.285714e-02   p_joint 4.542857e-02

Joint ci ratio: 6.168776e-02	ci left: 4.656581e-02	ci right 4.954207e-02	k: 3843	n:80000
Cons ci ratio: 1.204676e-01	ci left: 1.227502e-02	ci right 1.386058e-02	k: 1044	n:80000
KS ci ratio: 2.261512e-02	ci left: 2.699274e-01	ci right 2.761141e-01	k: 21841	n:80000
BEND4   80000 perm   21 sec   (3871 perm/sec)   p_kst 2.730125e-01   p_cons 1.305000e-02   p_joint 4.803750e-02

Joint ci ratio: 5.078029e-02	ci left: 6.052089e-02	ci right 6.368518e-02	k: 5588	n:90000
Cons ci ratio: 1.134131e-01	ci left: 1.235652e-02	ci right 1.385288e-02	k: 1178	n:90000
KS ci ratio: 2.132727e-02	ci left: 2.700027e-01	ci right 2.758342e-01	k: 24562	n:90000
BEND4   90000 perm   24 sec   (3808 perm/sec)   p_kst 2.729111e-01   p_cons 1.308889e-02   p_joint 6.208889e-02

Joint ci ratio: 5.166683e-02	ci left: 5.302197e-02	ci right 5.584395e-02	k: 5442	n:100000
Cons ci ratio: 1.081805e-01	ci left: 1.225842e-02	ci right 1.367004e-02	k: 1295	n:100000
KS ci ratio: 2.019477e-02	ci left: 2.708983e-01	ci right 2.764348e-01	k: 27366	n:100000
BEND4   100000 perm   27 sec   (3749 perm/sec)   p_kst 2.736600e-01   p_cons 1.295000e-02   p_joint 5.442000e-02

Joint ci ratio: 5.092688e-02	ci left: 4.980602e-02	ci right 5.241771e-02	k: 5621	n:110000
Cons ci ratio: 1.028395e-01	ci left: 1.236550e-02	ci right 1.371490e-02	k: 1433	n:110000
KS ci ratio: 1.927113e-02	ci left: 2.706951e-01	ci right 2.759714e-01	k: 30066	n:110000
BEND4   110000 perm   30 sec   (3691 perm/sec)   p_kst 2.733273e-01   p_cons 1.302727e-02   p_joint 5.110000e-02

Joint ci ratio: 5.190912e-02	ci left: 4.418781e-02	ci right 4.655089e-02	k: 5443	n:120000
Cons ci ratio: 9.834566e-02	ci left: 1.242364e-02	ci right 1.371672e-02	k: 1567	n:120000
KS ci ratio: 1.846440e-02	ci left: 2.705140e-01	ci right 2.755637e-01	k: 32764	n:120000
BEND4   120000 perm   33 sec   (3626 perm/sec)   p_kst 2.730333e-01   p_cons 1.305833e-02   p_joint 4.535833e-02

Outputting figure to mutsig2_images.part000000000016/BEND4.7_1625_120000_0.27303_0.013058_0.045358.png
                gene_name: BEND4
               theta_stop: 0.098 
                    nperm: 120000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.013 
      ci_cons_bounds_left: 0.012 
     ci_cons_bounds_right: 0.014 
                  p_joint: 0.045 
     ci_joint_bounds_left: 0.044 
    ci_joint_bounds_right: 0.047 

Current progress: 18 percent done.
BCL9L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.251744e-02	ci left: 3.482980e-01	ci right 3.671849e-01	k: 3577	n:10000
Cons ci ratio: 4.554104e-02	ci left: 4.157825e-01	ci right 4.352610e-01	k: 4255	n:10000
KS ci ratio: 5.773929e-02	ci left: 3.062974e-01	ci right 3.246102e-01	k: 3154	n:10000
BCL9L   10000 perm   2 sec   (4408 perm/sec)   p_kst 3.154000e-01   p_cons 4.255000e-01   p_joint 3.577000e-01

Outputting figure to mutsig2_images.part000000000016/BCL9L.5_4532_10000_0.3154_0.4255_0.3577.png
                gene_name: BCL9L
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 21 percent done.
BEND2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.021250e-02	ci left: 6.177371e-01	ci right 6.367887e-01	k: 6273	n:10000
KS ci ratio: 1.832994e-02	ci left: 8.129369e-01	ci right 8.280759e-01	k: 8206	n:10000
BEND2   10000 perm   2 sec   (4845 perm/sec)   p_kst 8.206000e-01   p_cons 6.273000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000016/BEND2.5_2482_10000_0.8206_0.6273_1.png
                gene_name: BEND2
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 23 percent done.
BCL6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.777008e-02	ci left: 5.086527e-01	ci right 5.283365e-01	k: 5185	n:10000
Cons ci ratio: 1.096588e-01	ci left: 1.070534e-01	ci right 1.195729e-01	k: 1132	n:10000
KS ci ratio: 8.387610e-03	ci left: 9.521083e-01	ci right 9.602233e-01	k: 9563	n:10000
BCL6   10000 perm   2 sec   (5368 perm/sec)   p_kst 9.563000e-01   p_cons 1.132000e-01   p_joint 5.185000e-01

Joint ci ratio: 3.431905e-02	ci left: 3.879665e-01	ci right 4.015642e-01	k: 7895	n:20000
Cons ci ratio: 7.842279e-02	ci left: 1.066782e-01	ci right 1.154352e-01	k: 2220	n:20000
KS ci ratio: 5.806674e-03	ci left: 9.551277e-01	ci right 9.607382e-01	k: 19160	n:20000
BCL6   20000 perm   4 sec   (4725 perm/sec)   p_kst 9.580000e-01   p_cons 1.110000e-01   p_joint 3.947500e-01

Outputting figure to mutsig2_images.part000000000016/BCL6.4_2153_20000_0.958_0.111_0.39475.png
                gene_name: BCL6
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.40 

Current progress: 26 percent done.
BDH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.650805e-02	ci left: 8.422384e-01	ci right 8.563575e-01	k: 8494	n:10000
KS ci ratio: 1.655317e-02	ci left: 8.415252e-01	ci right 8.556711e-01	k: 8487	n:10000
BDH1   10000 perm   2 sec   (6409 perm/sec)   p_kst 8.487000e-01   p_cons 8.494000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000016/BDH1.4_1056_10000_0.8487_0.8494_1.png
                gene_name: BDH1
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 28 percent done.
BEND3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.997354e-02	ci left: 7.858368e-01	ci right 8.017917e-01	k: 7939	n:10000
Cons ci ratio: 4.957627e-02	ci left: 3.750495e-01	ci right 3.942177e-01	k: 3846	n:10000
KS ci ratio: 2.246886e-02	ci left: 7.441210e-01	ci right 7.611316e-01	k: 7527	n:10000
BEND3   10000 perm   2 sec   (4958 perm/sec)   p_kst 7.527000e-01   p_cons 3.846000e-01   p_joint 7.939000e-01

Outputting figure to mutsig2_images.part000000000016/BEND3.4_2499_10000_0.7527_0.3846_0.7939.png
                gene_name: BEND3
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 31 percent done.
BCL9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.230595e-02	ci left: 7.468514e-01	ci right 7.637996e-01	k: 7554	n:10000
KS ci ratio: 2.389364e-02	ci left: 7.202736e-01	ci right 7.377928e-01	k: 7291	n:10000
BCL9   10000 perm   2 sec   (4606 perm/sec)   p_kst 7.291000e-01   p_cons 7.554000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000016/BCL9.3_4309_10000_0.7291_0.7554_1.png
                gene_name: BCL9
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 33 percent done.
BDKRB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.000184e-02	ci left: 4.799564e-01	ci right 4.996496e-01	k: 4898	n:10000
Cons ci ratio: 4.682149e-02	ci left: 4.023300e-01	ci right 4.217213e-01	k: 4120	n:10000
KS ci ratio: 8.853449e-02	ci left: 1.565950e-01	ci right 1.712014e-01	k: 1638	n:10000
BDKRB2   10000 perm   2 sec   (6425 perm/sec)   p_kst 1.638000e-01   p_cons 4.120000e-01   p_joint 4.898000e-01

Outputting figure to mutsig2_images.part000000000016/BDKRB2.3_1184_10000_0.1638_0.412_0.4898.png
                gene_name: BDKRB2
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 36 percent done.
BEST3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.650251e-01	ci left: 9.321618e-03	ci right 1.357016e-02	k: 113	n:10000
Cons ci ratio: 8.417606e-03	ci left: 9.517953e-01	ci right 9.599365e-01	k: 9560	n:10000
KS ci ratio: 1.130871e+00	ci left: 5.492399e-04	ci right 1.967349e-03	k: 11	n:10000
BEST3   10000 perm   2 sec   (5481 perm/sec)   p_kst 1.100000e-03   p_cons 9.560000e-01   p_joint 1.130000e-02

Joint ci ratio: 3.362310e-01	ci left: 5.616577e-03	ci right 7.930323e-03	k: 134	n:20000
Cons ci ratio: 6.260620e-03	ci left: 9.484315e-01	ci right 9.544364e-01	k: 19030	n:20000
KS ci ratio: 9.235139e-01	ci left: 4.952318e-04	ci right 1.360585e-03	k: 17	n:20000
BEST3   20000 perm   4 sec   (4948 perm/sec)   p_kst 8.500000e-04   p_cons 9.515000e-01   p_joint 6.700000e-03

Joint ci ratio: 2.857593e-01	ci left: 5.343177e-03	ci right 7.154445e-03	k: 186	n:30000
Cons ci ratio: 5.142352e-03	ci left: 9.484283e-01	ci right 9.533505e-01	k: 28528	n:30000
KS ci ratio: 7.836602e-01	ci left: 5.126402e-04	ci right 1.190104e-03	k: 24	n:30000
BEST3   30000 perm   6 sec   (4724 perm/sec)   p_kst 8.000000e-04   p_cons 9.509333e-01   p_joint 6.200000e-03

Joint ci ratio: 2.907077e-01	ci left: 3.867775e-03	ci right 5.205722e-03	k: 180	n:40000
Cons ci ratio: 4.463033e-03	ci left: 9.485585e-01	ci right 9.528258e-01	k: 38029	n:40000
KS ci ratio: 6.820944e-01	ci left: 5.472618e-04	ci right 1.129175e-03	k: 32	n:40000
BEST3   40000 perm   9 sec   (4562 perm/sec)   p_kst 8.000000e-04   p_cons 9.507250e-01   p_joint 4.500000e-03

Joint ci ratio: 3.515861e-01	ci left: 2.044905e-03	ci right 2.934431e-03	k: 123	n:50000
Cons ci ratio: 3.982531e-03	ci left: 9.490104e-01	ci right 9.528170e-01	k: 47547	n:50000
KS ci ratio: 6.356599e-01	ci left: 5.210801e-04	ci right 1.019850e-03	k: 37	n:50000
BEST3   50000 perm   11 sec   (4403 perm/sec)   p_kst 7.400000e-04   p_cons 9.509400e-01   p_joint 2.460000e-03

Joint ci ratio: 3.956530e-01	ci left: 1.311197e-03	ci right 1.971846e-03	k: 97	n:60000
Cons ci ratio: 3.629202e-03	ci left: 9.493441e-01	ci right 9.528121e-01	k: 57066	n:60000
KS ci ratio: 5.715620e-01	ci left: 5.613493e-04	ci right 1.022495e-03	k: 46	n:60000
BEST3   60000 perm   14 sec   (4310 perm/sec)   p_kst 7.666667e-04   p_cons 9.511000e-01   p_joint 1.616667e-03

Joint ci ratio: 3.977370e-01	ci left: 1.110998e-03	ci right 1.674495e-03	k: 96	n:70000
Cons ci ratio: 3.347006e-03	ci left: 9.498391e-01	ci right 9.530376e-01	k: 66602	n:70000
KS ci ratio: 5.434004e-01	ci left: 5.425159e-04	ci right 9.578270e-04	k: 51	n:70000
BEST3   70000 perm   17 sec   (4226 perm/sec)   p_kst 7.285714e-04   p_cons 9.514571e-01   p_joint 1.371429e-03

Joint ci ratio: 3.878879e-01	ci left: 1.028441e-03	ci right 1.533844e-03	k: 101	n:80000
Cons ci ratio: 3.147937e-03	ci left: 9.494307e-01	ci right 9.524365e-01	k: 76076	n:80000
KS ci ratio: 5.101491e-01	ci left: 5.505675e-04	ci right 9.371312e-04	k: 58	n:80000
BEST3   80000 perm   19 sec   (4134 perm/sec)   p_kst 7.250000e-04   p_cons 9.509500e-01   p_joint 1.262500e-03

Joint ci ratio: 2.330653e-01	ci left: 2.768278e-03	ci right 3.508765e-03	k: 281	n:90000
Cons ci ratio: 2.960972e-03	ci left: 9.497385e-01	ci right 9.525657e-01	k: 85605	n:90000
KS ci ratio: 4.650323e-01	ci left: 6.063646e-04	ci right 9.825747e-04	k: 70	n:90000
BEST3   90000 perm   22 sec   (4046 perm/sec)   p_kst 7.777778e-04   p_cons 9.511667e-01   p_joint 3.122222e-03

Joint ci ratio: 2.205177e-01	ci left: 2.802719e-03	ci right 3.506587e-03	k: 314	n:100000
Cons ci ratio: 2.802241e-03	ci left: 9.500390e-01	ci right 9.527148e-01	k: 95139	n:100000
KS ci ratio: 4.300952e-01	ci left: 6.522218e-04	ci right 1.017736e-03	k: 82	n:100000
BEST3   100000 perm   25 sec   (3978 perm/sec)   p_kst 8.200000e-04   p_cons 9.513900e-01   p_joint 3.140000e-03

Joint ci ratio: 3.136271e-01	ci left: 1.196114e-03	ci right 1.649010e-03	k: 155	n:110000
Cons ci ratio: 2.676770e-03	ci left: 9.499287e-01	ci right 9.524838e-01	k: 104634	n:110000
KS ci ratio: 4.085155e-01	ci left: 6.661191e-04	ci right 1.015612e-03	k: 91	n:110000
BEST3   110000 perm   28 sec   (3912 perm/sec)   p_kst 8.272727e-04   p_cons 9.512182e-01   p_joint 1.409091e-03

Joint ci ratio: 3.049604e-01	ci left: 1.165615e-03	ci right 1.592400e-03	k: 164	n:120000
Cons ci ratio: 2.564219e-03	ci left: 9.499322e-01	ci right 9.523793e-01	k: 114140	n:120000
KS ci ratio: 4.020226e-01	ci left: 6.330580e-04	ci right 9.585176e-04	k: 94	n:120000
BEST3   120000 perm   31 sec   (3826 perm/sec)   p_kst 7.833333e-04   p_cons 9.511667e-01   p_joint 1.366667e-03

Joint ci ratio: 2.903651e-01	ci left: 1.196966e-03	ci right 1.610404e-03	k: 181	n:130000
Cons ci ratio: 2.464968e-03	ci left: 9.499293e-01	ci right 9.522813e-01	k: 123645	n:130000
KS ci ratio: 3.823968e-01	ci left: 6.537033e-04	ci right 9.692518e-04	k: 104	n:130000
BEST3   130000 perm   35 sec   (3765 perm/sec)   p_kst 8.000000e-04   p_cons 9.511154e-01   p_joint 1.392308e-03

Joint ci ratio: 2.819722e-01	ci left: 1.184400e-03	ci right 1.579572e-03	k: 192	n:140000
Cons ci ratio: 2.380606e-03	ci left: 9.497624e-01	ci right 9.520331e-01	k: 133127	n:140000
KS ci ratio: 3.753204e-01	ci left: 6.328594e-04	ci right 9.313020e-04	k: 108	n:140000
BEST3   140000 perm   38 sec   (3706 perm/sec)   p_kst 7.714286e-04   p_cons 9.509071e-01   p_joint 1.371429e-03

Joint ci ratio: 2.729308e-01	ci left: 1.186079e-03	ci right 1.566947e-03	k: 205	n:150000
Cons ci ratio: 2.296765e-03	ci left: 9.499292e-01	ci right 9.521200e-01	k: 142655	n:150000
KS ci ratio: 3.638209e-01	ci left: 6.330022e-04	ci right 9.201965e-04	k: 115	n:150000
BEST3   150000 perm   41 sec   (3643 perm/sec)   p_kst 7.666667e-04   p_cons 9.510333e-01   p_joint 1.366667e-03

Joint ci ratio: 2.571732e-01	ci left: 1.263668e-03	ci right 1.642267e-03	k: 231	n:160000
Cons ci ratio: 2.225516e-03	ci left: 9.498931e-01	ci right 9.520156e-01	k: 152154	n:160000
KS ci ratio: 3.436660e-01	ci left: 6.731729e-04	ci right 9.579185e-04	k: 129	n:160000
BEST3   160000 perm   45 sec   (3586 perm/sec)   p_kst 8.062500e-04   p_cons 9.509625e-01   p_joint 1.443750e-03

Joint ci ratio: 2.472448e-01	ci left: 1.294040e-03	ci right 1.664472e-03	k: 250	n:170000
Cons ci ratio: 2.159963e-03	ci left: 9.498860e-01	ci right 9.519457e-01	k: 161657	n:170000
KS ci ratio: 3.323531e-01	ci left: 6.820241e-04	ci right 9.589866e-04	k: 138	n:170000
BEST3   170000 perm   48 sec   (3520 perm/sec)   p_kst 8.117647e-04   p_cons 9.509235e-01   p_joint 1.470588e-03

Joint ci ratio: 3.231832e-01	ci left: 6.849222e-04	ci right 9.537976e-04	k: 146	n:180000
Cons ci ratio: 2.096756e-03	ci left: 9.500207e-01	ci right 9.520203e-01	k: 171185	n:180000
KS ci ratio: 3.231832e-01	ci left: 6.849222e-04	ci right 9.537976e-04	k: 146	n:180000
BEST3   180000 perm   52 sec   (3471 perm/sec)   p_kst 8.111111e-04   p_cons 9.510278e-01   p_joint 8.111111e-04

Joint ci ratio: 3.178259e-01	ci left: 6.730720e-04	ci right 9.320246e-04	k: 151	n:190000
Cons ci ratio: 2.039475e-03	ci left: 9.501101e-01	ci right 9.520550e-01	k: 180707	n:190000
KS ci ratio: 3.178259e-01	ci left: 6.730720e-04	ci right 9.320246e-04	k: 151	n:190000
BEST3   190000 perm   55 sec   (3424 perm/sec)   p_kst 7.947368e-04   p_cons 9.510895e-01   p_joint 7.947368e-04

Joint ci ratio: 3.107518e-01	ci left: 6.716582e-04	ci right 9.231750e-04	k: 158	n:200000
Cons ci ratio: 1.986323e-03	ci left: 9.502063e-01	ci right 9.521006e-01	k: 190232	n:200000
KS ci ratio: 3.107518e-01	ci left: 6.716582e-04	ci right 9.231750e-04	k: 158	n:200000
BEST3   200000 perm   59 sec   (3377 perm/sec)   p_kst 7.900000e-04   p_cons 9.511600e-01   p_joint 7.900000e-04

Joint ci ratio: 3.014164e-01	ci left: 6.836380e-04	ci right 9.304777e-04	k: 168	n:210000
Cons ci ratio: 1.935129e-03	ci left: 9.503900e-01	ci right 9.522356e-01	k: 199777	n:210000
KS ci ratio: 3.014164e-01	ci left: 6.836380e-04	ci right 9.304777e-04	k: 168	n:210000
BEST3   210000 perm   63 sec   (3331 perm/sec)   p_kst 8.000000e-04   p_cons 9.513190e-01   p_joint 8.000000e-04

Joint ci ratio: 2.962056e-01	ci left: 6.777917e-04	ci right 9.174949e-04	k: 174	n:220000
Cons ci ratio: 1.890652e-03	ci left: 9.504107e-01	ci right 9.522138e-01	k: 209290	n:220000
KS ci ratio: 2.962056e-01	ci left: 6.777917e-04	ci right 9.174949e-04	k: 174	n:220000
BEST3   220000 perm   67 sec   (3284 perm/sec)   p_kst 7.909091e-04   p_cons 9.513182e-01   p_joint 7.909091e-04

Joint ci ratio: 2.920646e-01	ci left: 6.684573e-04	ci right 9.009432e-04	k: 179	n:230000
Cons ci ratio: 1.851275e-03	ci left: 9.503204e-01	ci right 9.520856e-01	k: 218778	n:230000
KS ci ratio: 2.920646e-01	ci left: 6.684573e-04	ci right 9.009432e-04	k: 179	n:230000
BEST3   230000 perm   71 sec   (3239 perm/sec)   p_kst 7.782609e-04   p_cons 9.512087e-01   p_joint 7.782609e-04

Joint ci ratio: 2.880924e-01	ci left: 6.599222e-04	ci right 8.857495e-04	k: 184	n:240000
Cons ci ratio: 1.812952e-03	ci left: 9.503053e-01	ci right 9.520338e-01	k: 228282	n:240000
KS ci ratio: 2.880924e-01	ci left: 6.599222e-04	ci right 8.857495e-04	k: 184	n:240000
BEST3   240000 perm   75 sec   (3196 perm/sec)   p_kst 7.666667e-04   p_cons 9.511750e-01   p_joint 7.666667e-04

Joint ci ratio: 2.402222e-01	ci left: 9.362623e-04	ci right 1.195529e-03	k: 265	n:250000
Cons ci ratio: 1.778900e-03	ci left: 9.501869e-01	ci right 9.518826e-01	k: 237760	n:250000
KS ci ratio: 2.813298e-01	ci left: 6.669556e-04	ci right 8.888824e-04	k: 193	n:250000
BEST3   250000 perm   79 sec   (3153 perm/sec)   p_kst 7.720000e-04   p_cons 9.510400e-01   p_joint 1.060000e-03

Joint ci ratio: 2.341382e-01	ci left: 9.508999e-04	ci right 1.206585e-03	k: 279	n:260000
Cons ci ratio: 1.743373e-03	ci left: 9.502563e-01	ci right 9.519182e-01	k: 247284	n:260000
KS ci ratio: 2.736762e-01	ci left: 6.806686e-04	ci right 8.999374e-04	k: 204	n:260000
BEST3   260000 perm   84 sec   (3110 perm/sec)   p_kst 7.846154e-04   p_cons 9.510923e-01   p_joint 1.073077e-03

Joint ci ratio: 2.672348e-01	ci left: 6.899852e-04	ci right 9.061479e-04	k: 214	n:270000
Cons ci ratio: 1.711662e-03	ci left: 9.502238e-01	ci right 9.518553e-01	k: 256782	n:270000
KS ci ratio: 2.672348e-01	ci left: 6.899852e-04	ci right 9.061479e-04	k: 214	n:270000
BEST3   270000 perm   88 sec   (3069 perm/sec)   p_kst 7.925926e-04   p_cons 9.510444e-01   p_joint 7.925926e-04

Joint ci ratio: 2.635832e-01	ci left: 6.853456e-04	ci right 8.966368e-04	k: 220	n:280000
Cons ci ratio: 1.678136e-03	ci left: 9.503883e-01	ci right 9.519880e-01	k: 266334	n:280000
KS ci ratio: 2.635832e-01	ci left: 6.853456e-04	ci right 8.966368e-04	k: 220	n:280000
BEST3   280000 perm   92 sec   (3029 perm/sec)   p_kst 7.857143e-04   p_cons 9.511929e-01   p_joint 7.857143e-04

Joint ci ratio: 2.624012e-01	ci left: 6.681540e-04	ci right 8.730697e-04	k: 222	n:290000
Cons ci ratio: 1.648698e-03	ci left: 9.504166e-01	ci right 9.519882e-01	k: 275850	n:290000
KS ci ratio: 2.624012e-01	ci left: 6.681540e-04	ci right 8.730697e-04	k: 222	n:290000
BEST3   290000 perm   97 sec   (2991 perm/sec)   p_kst 7.655172e-04   p_cons 9.512069e-01   p_joint 7.655172e-04

Joint ci ratio: 2.561580e-01	ci left: 6.801669e-04	ci right 8.830107e-04	k: 233	n:300000
Cons ci ratio: 1.621280e-03	ci left: 9.504129e-01	ci right 9.519583e-01	k: 285357	n:300000
KS ci ratio: 2.561580e-01	ci left: 6.801669e-04	ci right 8.830107e-04	k: 233	n:300000
BEST3   300000 perm   102 sec   (2952 perm/sec)   p_kst 7.766667e-04   p_cons 9.511900e-01   p_joint 7.766667e-04

Joint ci ratio: 2.524108e-01	ci left: 6.793677e-04	ci right 8.785432e-04	k: 240	n:310000
Cons ci ratio: 1.593302e-03	ci left: 9.505202e-01	ci right 9.520391e-01	k: 294898	n:310000
KS ci ratio: 2.524108e-01	ci left: 6.793677e-04	ci right 8.785432e-04	k: 240	n:310000
BEST3   310000 perm   106 sec   (2917 perm/sec)   p_kst 7.741935e-04   p_cons 9.512839e-01   p_joint 7.741935e-04

Joint ci ratio: 2.483228e-01	ci left: 6.815691e-04	ci right 8.776540e-04	k: 248	n:320000
Cons ci ratio: 1.568728e-03	ci left: 9.505014e-01	ci right 9.519967e-01	k: 304401	n:320000
KS ci ratio: 2.483228e-01	ci left: 6.815691e-04	ci right 8.776540e-04	k: 248	n:320000
BEST3   320000 perm   111 sec   (2881 perm/sec)   p_kst 7.750000e-04   p_cons 9.512531e-01   p_joint 7.750000e-04

Joint ci ratio: 2.444273e-01	ci left: 6.836614e-04	ci right 8.767944e-04	k: 256	n:330000
Cons ci ratio: 1.544550e-03	ci left: 9.505266e-01	ci right 9.519988e-01	k: 313918	n:330000
KS ci ratio: 2.444273e-01	ci left: 6.836614e-04	ci right 8.767944e-04	k: 256	n:330000
BEST3   330000 perm   116 sec   (2845 perm/sec)   p_kst 7.757576e-04   p_cons 9.512667e-01   p_joint 7.757576e-04

Joint ci ratio: 2.420847e-01	ci left: 6.773630e-04	ci right 8.666073e-04	k: 261	n:340000
Cons ci ratio: 1.521552e-03	ci left: 9.505445e-01	ci right 9.519948e-01	k: 323433	n:340000
KS ci ratio: 2.420847e-01	ci left: 6.773630e-04	ci right 8.666073e-04	k: 261	n:340000
BEST3   340000 perm   121 sec   (2811 perm/sec)   p_kst 7.676471e-04   p_cons 9.512735e-01   p_joint 7.676471e-04

Joint ci ratio: 2.402589e-01	ci left: 6.687473e-04	ci right 8.539655e-04	k: 265	n:350000
Cons ci ratio: 1.497703e-03	ci left: 9.506767e-01	ci right 9.521044e-01	k: 332988	n:350000
KS ci ratio: 2.402589e-01	ci left: 6.687473e-04	ci right 8.539655e-04	k: 265	n:350000
BEST3   350000 perm   126 sec   (2777 perm/sec)   p_kst 7.571429e-04   p_cons 9.513943e-01   p_joint 7.571429e-04

Joint ci ratio: 2.358655e-01	ci left: 6.762924e-04	ci right 8.596753e-04	k: 275	n:360000
Cons ci ratio: 1.477195e-03	ci left: 9.506590e-01	ci right 9.520671e-01	k: 342492	n:360000
KS ci ratio: 2.358655e-01	ci left: 6.762924e-04	ci right 8.596753e-04	k: 275	n:360000
BEST3   360000 perm   131 sec   (2746 perm/sec)   p_kst 7.638889e-04   p_cons 9.513667e-01   p_joint 7.638889e-04

Joint ci ratio: 2.321110e-01	ci left: 6.809129e-04	ci right 8.621882e-04	k: 284	n:370000
Cons ci ratio: 1.455804e-03	ci left: 9.507512e-01	ci right 9.521390e-01	k: 352036	n:370000
KS ci ratio: 2.321110e-01	ci left: 6.809129e-04	ci right 8.621882e-04	k: 284	n:370000
BEST3   370000 perm   136 sec   (2715 perm/sec)   p_kst 7.675676e-04   p_cons 9.514486e-01   p_joint 7.675676e-04

Joint ci ratio: 2.293122e-01	ci left: 6.803506e-04	ci right 8.589830e-04	k: 291	n:380000
Cons ci ratio: 1.435230e-03	ci left: 9.508440e-01	ci right 9.522123e-01	k: 361582	n:380000
KS ci ratio: 2.293122e-01	ci left: 6.803506e-04	ci right 8.589830e-04	k: 291	n:380000
BEST3   380000 perm   142 sec   (2683 perm/sec)   p_kst 7.657895e-04   p_cons 9.515316e-01   p_joint 7.657895e-04

Joint ci ratio: 2.254830e-01	ci left: 6.870865e-04	ci right 8.640565e-04	k: 301	n:390000
Cons ci ratio: 1.416407e-03	ci left: 9.508728e-01	ci right 9.522231e-01	k: 371105	n:390000
KS ci ratio: 2.254830e-01	ci left: 6.870865e-04	ci right 8.640565e-04	k: 301	n:390000
BEST3   390000 perm   147 sec   (2651 perm/sec)   p_kst 7.717949e-04   p_cons 9.515513e-01   p_joint 7.717949e-04

Joint ci ratio: 2.229146e-01	ci left: 6.864266e-04	ci right 8.609363e-04	k: 308	n:400000
Cons ci ratio: 1.397471e-03	ci left: 9.509556e-01	ci right 9.522879e-01	k: 380650	n:400000
KS ci ratio: 2.229146e-01	ci left: 6.864266e-04	ci right 8.609363e-04	k: 308	n:400000
BEST3   400000 perm   153 sec   (2620 perm/sec)   p_kst 7.700000e-04   p_cons 9.516250e-01   p_joint 7.700000e-04

Joint ci ratio: 2.204320e-01	ci left: 6.858097e-04	ci right 8.579575e-04	k: 315	n:410000
Cons ci ratio: 1.381538e-03	ci left: 9.508822e-01	ci right 9.521992e-01	k: 390133	n:410000
KS ci ratio: 2.204320e-01	ci left: 6.858097e-04	ci right 8.579575e-04	k: 315	n:410000
BEST3   410000 perm   158 sec   (2592 perm/sec)   p_kst 7.682927e-04   p_cons 9.515439e-01   p_joint 7.682927e-04

Joint ci ratio: 2.180305e-01	ci left: 6.852324e-04	ci right 8.551104e-04	k: 322	n:420000
Cons ci ratio: 1.364337e-03	ci left: 9.509347e-01	ci right 9.522353e-01	k: 399667	n:420000
KS ci ratio: 2.180305e-01	ci left: 6.852324e-04	ci right 8.551104e-04	k: 322	n:420000
BEST3   420000 perm   164 sec   (2564 perm/sec)   p_kst 7.666667e-04   p_cons 9.515881e-01   p_joint 7.666667e-04

Joint ci ratio: 2.147312e-01	ci left: 6.912926e-04	ci right 8.597379e-04	k: 332	n:430000
Cons ci ratio: 1.348817e-03	ci left: 9.509122e-01	ci right 9.521980e-01	k: 409170	n:430000
KS ci ratio: 2.147312e-01	ci left: 6.912926e-04	ci right 8.597379e-04	k: 332	n:430000
BEST3   430000 perm   170 sec   (2537 perm/sec)   p_kst 7.720930e-04   p_cons 9.515581e-01   p_joint 7.720930e-04

Joint ci ratio: 2.112694e-01	ci left: 6.992482e-04	ci right 8.665296e-04	k: 343	n:440000
Cons ci ratio: 1.333124e-03	ci left: 9.509389e-01	ci right 9.522097e-01	k: 418694	n:440000
KS ci ratio: 2.112694e-01	ci left: 6.992482e-04	ci right 8.665296e-04	k: 343	n:440000
BEST3   440000 perm   175 sec   (2509 perm/sec)   p_kst 7.795455e-04   p_cons 9.515773e-01   p_joint 7.795455e-04

Joint ci ratio: 2.079697e-01	ci left: 7.068710e-04	ci right 8.729987e-04	k: 354	n:450000
Cons ci ratio: 1.317330e-03	ci left: 9.510092e-01	ci right 9.522650e-01	k: 428238	n:450000
KS ci ratio: 2.079697e-01	ci left: 7.068710e-04	ci right 8.729987e-04	k: 354	n:450000
BEST3   450000 perm   181 sec   (2482 perm/sec)   p_kst 7.866667e-04   p_cons 9.516400e-01   p_joint 7.866667e-04

Joint ci ratio: 2.045405e-01	ci left: 7.162443e-04	ci right 8.814524e-04	k: 366	n:460000
Cons ci ratio: 1.302206e-03	ci left: 9.510677e-01	ci right 9.523092e-01	k: 437778	n:460000
KS ci ratio: 2.045405e-01	ci left: 7.162443e-04	ci right 8.814524e-04	k: 366	n:460000
BEST3   460000 perm   187 sec   (2456 perm/sec)   p_kst 7.956522e-04   p_cons 9.516913e-01   p_joint 7.956522e-04

Joint ci ratio: 2.031619e-01	ci left: 7.111001e-04	ci right 8.738790e-04	k: 371	n:470000
Cons ci ratio: 1.288126e-03	ci left: 9.510853e-01	ci right 9.523133e-01	k: 447300	n:470000
KS ci ratio: 2.031619e-01	ci left: 7.111001e-04	ci right 8.738790e-04	k: 371	n:470000
BEST3   470000 perm   193 sec   (2431 perm/sec)   p_kst 7.893617e-04   p_cons 9.517021e-01   p_joint 7.893617e-04

Joint ci ratio: 1.615589e-01	ci left: 1.126028e-03	ci right 1.325904e-03	k: 587	n:480000
Cons ci ratio: 1.223186e-03	ci left: 9.547640e-01	ci right 9.559346e-01	k: 458569	n:480000
KS ci ratio: 2.004846e-01	ci left: 7.160663e-04	ci right 8.775576e-04	k: 381	n:480000
BEST3   480000 perm   200 sec   (2404 perm/sec)   p_kst 7.937500e-04   p_cons 9.553521e-01   p_joint 1.222917e-03

Joint ci ratio: 1.468013e-01	ci left: 1.346379e-03	ci right 1.561626e-03	k: 711	n:490000
Cons ci ratio: 1.211089e-03	ci left: 9.547382e-01	ci right 9.558972e-01	k: 468107	n:490000
KS ci ratio: 1.979105e-01	ci left: 7.208432e-04	ci right 8.810728e-04	k: 391	n:490000
BEST3   490000 perm   206 sec   (2379 perm/sec)   p_kst 7.979592e-04   p_cons 9.553204e-01   p_joint 1.451020e-03

Joint ci ratio: 1.451789e-01	ci left: 1.350283e-03	ci right 1.563561e-03	k: 727	n:500000
Cons ci ratio: 1.199063e-03	ci left: 9.547336e-01	ci right 9.558811e-01	k: 477655	n:500000
KS ci ratio: 1.951902e-01	ci left: 7.273440e-04	ci right 8.865322e-04	k: 402	n:500000
BEST3   500000 perm   212 sec   (2356 perm/sec)   p_kst 8.040000e-04   p_cons 9.553100e-01   p_joint 1.454000e-03

Joint ci ratio: 1.442905e-01	ci left: 1.340814e-03	ci right 1.551189e-03	k: 736	n:510000
Cons ci ratio: 1.186924e-03	ci left: 9.547628e-01	ci right 9.558987e-01	k: 487220	n:510000
KS ci ratio: 1.937536e-01	ci left: 7.242741e-04	ci right 8.814862e-04	k: 408	n:510000
BEST3   510000 perm   219 sec   (2333 perm/sec)   p_kst 8.000000e-04   p_cons 9.553333e-01   p_joint 1.443137e-03

Joint ci ratio: 1.553429e-01	ci left: 1.128060e-03	ci right 1.319874e-03	k: 635	n:520000
Cons ci ratio: 1.175624e-03	ci left: 9.547561e-01	ci right 9.558811e-01	k: 496767	n:520000
KS ci ratio: 1.925806e-01	ci left: 7.194960e-04	ci right 8.746146e-04	k: 413	n:520000
BEST3   520000 perm   225 sec   (2310 perm/sec)   p_kst 7.942308e-04   p_cons 9.553212e-01   p_joint 1.221154e-03

Joint ci ratio: 1.544958e-01	ci left: 1.119471e-03	ci right 1.308691e-03	k: 642	n:530000
Cons ci ratio: 1.165514e-03	ci left: 9.546852e-01	ci right 9.558004e-01	k: 506280	n:530000
KS ci ratio: 1.912004e-01	ci left: 7.166974e-04	ci right 8.699766e-04	k: 419	n:530000
BEST3   530000 perm   232 sec   (2287 perm/sec)   p_kst 7.905660e-04   p_cons 9.552453e-01   p_joint 1.211321e-03

Joint ci ratio: 1.531911e-01	ci left: 1.118326e-03	ci right 1.305610e-03	k: 653	n:540000
Cons ci ratio: 1.154333e-03	ci left: 9.547157e-01	ci right 9.558202e-01	k: 515846	n:540000
KS ci ratio: 1.894051e-01	ci left: 7.175342e-04	ci right 8.693857e-04	k: 427	n:540000
BEST3   540000 perm   238 sec   (2265 perm/sec)   p_kst 7.907407e-04   p_cons 9.552704e-01   p_joint 1.209259e-03

Joint ci ratio: 1.519190e-01	ci left: 1.117229e-03	ci right 1.302634e-03	k: 664	n:550000
Cons ci ratio: 1.144343e-03	ci left: 9.546792e-01	ci right 9.557741e-01	k: 525376	n:550000
KS ci ratio: 1.878751e-01	ci left: 7.166144e-04	ci right 8.669063e-04	k: 434	n:550000
BEST3   550000 perm   245 sec   (2243 perm/sec)   p_kst 7.890909e-04   p_cons 9.552291e-01   p_joint 1.207273e-03

Joint ci ratio: 1.500130e-01	ci left: 1.126490e-03	ci right 1.310876e-03	k: 681	n:560000
Cons ci ratio: 1.134133e-03	ci left: 9.546801e-01	ci right 9.557652e-01	k: 534926	n:560000
KS ci ratio: 1.859610e-01	ci left: 7.191372e-04	ci right 8.682483e-04	k: 443	n:560000
BEST3   560000 perm   252 sec   (2222 perm/sec)   p_kst 7.910714e-04   p_cons 9.552250e-01   p_joint 1.216071e-03

Joint ci ratio: 1.378927e-01	ci left: 1.318149e-03	ci right 1.515045e-03	k: 806	n:570000
Cons ci ratio: 1.124653e-03	ci left: 9.546457e-01	ci right 9.557216e-01	k: 544456	n:570000
KS ci ratio: 1.843080e-01	ci left: 7.199054e-04	ci right 8.677007e-04	k: 451	n:570000
BEST3   570000 perm   259 sec   (2201 perm/sec)   p_kst 7.912281e-04   p_cons 9.551860e-01   p_joint 1.414035e-03

Joint ci ratio: 1.363797e-01	ci left: 1.325392e-03	ci right 1.521021e-03	k: 824	n:580000
Cons ci ratio: 1.114912e-03	ci left: 9.546506e-01	ci right 9.557173e-01	k: 554008	n:580000
KS ci ratio: 1.823021e-01	ci left: 7.239437e-04	ci right 8.707718e-04	k: 461	n:580000
BEST3   580000 perm   266 sec   (2180 perm/sec)   p_kst 7.948276e-04   p_cons 9.551862e-01   p_joint 1.420690e-03

Joint ci ratio: 1.353178e-01	ci left: 1.324213e-03	ci right 1.518024e-03	k: 837	n:590000
Cons ci ratio: 1.104676e-03	ci left: 9.547134e-01	ci right 9.557703e-01	k: 563594	n:590000
KS ci ratio: 1.811300e-01	ci left: 7.213803e-04	ci right 8.666447e-04	k: 467	n:590000
BEST3   590000 perm   273 sec   (2160 perm/sec)   p_kst 7.915254e-04   p_cons 9.552441e-01   p_joint 1.418644e-03

Joint ci ratio: 1.485009e-01	ci left: 1.073850e-03	ci right 1.247691e-03	k: 695	n:600000
Cons ci ratio: 1.141642e-03	ci left: 9.510288e-01	ci right 9.521168e-01	k: 570945	n:600000
KS ci ratio: 1.801706e-01	ci left: 7.173136e-04	ci right 8.609105e-04	k: 472	n:600000
BEST3   600000 perm   280 sec   (2141 perm/sec)   p_kst 7.866667e-04   p_cons 9.515750e-01   p_joint 1.158333e-03

Joint ci ratio: 1.467192e-01	ci left: 1.083086e-03	ci right 1.256134e-03	k: 712	n:610000
Cons ci ratio: 1.132280e-03	ci left: 9.510305e-01	ci right 9.521095e-01	k: 580459	n:610000
KS ci ratio: 1.777438e-01	ci left: 7.259116e-04	ci right 8.690620e-04	k: 485	n:610000
BEST3   610000 perm   288 sec   (2121 perm/sec)   p_kst 7.950820e-04   p_cons 9.515721e-01   p_joint 1.167213e-03

Joint ci ratio: 1.456004e-01	ci left: 1.082710e-03	ci right 1.254264e-03	k: 723	n:620000
Cons ci ratio: 1.123774e-03	ci left: 9.509802e-01	ci right 9.520511e-01	k: 589941	n:620000
KS ci ratio: 1.759426e-01	ci left: 7.296185e-04	ci right 8.718869e-04	k: 495	n:620000
BEST3   620000 perm   295 sec   (2103 perm/sec)   p_kst 7.983871e-04   p_cons 9.515177e-01   p_joint 1.166129e-03

Joint ci ratio: 1.442125e-01	ci left: 1.086941e-03	ci right 1.257382e-03	k: 737	n:630000
Cons ci ratio: 1.114573e-03	ci left: 9.510050e-01	ci right 9.520671e-01	k: 599469	n:630000
KS ci ratio: 1.743676e-01	ci left: 7.316968e-04	ci right 8.729587e-04	k: 504	n:630000
BEST3   630000 perm   302 sec   (2084 perm/sec)   p_kst 8.000000e-04   p_cons 9.515381e-01   p_joint 1.169841e-03

Joint ci ratio: 1.436305e-01	ci left: 1.078994e-03	ci right 1.247448e-03	k: 743	n:640000
Cons ci ratio: 1.106363e-03	ci left: 9.509646e-01	ci right 9.520188e-01	k: 608956	n:640000
KS ci ratio: 1.736817e-01	ci left: 7.262416e-04	ci right 8.658410e-04	k: 508	n:640000
BEST3   640000 perm   310 sec   (2067 perm/sec)   p_kst 7.937500e-04   p_cons 9.514938e-01   p_joint 1.160938e-03

Joint ci ratio: 1.845214e-01	ci left: 6.298315e-04	ci right 7.593010e-04	k: 450	n:650000
Cons ci ratio: 1.098001e-03	ci left: 9.509533e-01	ci right 9.519996e-01	k: 618461	n:650000
KS ci ratio: 1.845214e-01	ci left: 6.298315e-04	ci right 7.593010e-04	k: 450	n:650000
BEST3   650000 perm   317 sec   (2049 perm/sec)   p_kst 6.923077e-04   p_cons 9.514785e-01   p_joint 6.923077e-04

Joint ci ratio: 1.823109e-01	ci left: 6.361903e-04	ci right 7.652272e-04	k: 461	n:660000
Cons ci ratio: 1.090433e-03	ci left: 9.508907e-01	ci right 9.519296e-01	k: 627932	n:660000
KS ci ratio: 1.823109e-01	ci left: 6.361903e-04	ci right 7.652272e-04	k: 461	n:660000
BEST3   660000 perm   325 sec   (2032 perm/sec)   p_kst 6.984848e-04   p_cons 9.514121e-01   p_joint 6.984848e-04

Joint ci ratio: 1.813326e-01	ci left: 6.338178e-04	ci right 7.616080e-04	k: 466	n:670000
Cons ci ratio: 1.082250e-03	ci left: 9.508959e-01	ci right 9.519270e-01	k: 637447	n:670000
KS ci ratio: 1.813326e-01	ci left: 6.338178e-04	ci right 7.616080e-04	k: 466	n:670000
BEST3   670000 perm   333 sec   (2014 perm/sec)   p_kst 6.955224e-04   p_cons 9.514134e-01   p_joint 6.955224e-04

Joint ci ratio: 1.803699e-01	ci left: 6.315170e-04	ci right 7.580934e-04	k: 471	n:680000
Cons ci ratio: 1.073752e-03	ci left: 9.509439e-01	ci right 9.519670e-01	k: 646991	n:680000
KS ci ratio: 1.803699e-01	ci left: 6.315170e-04	ci right 7.580934e-04	k: 471	n:680000
BEST3   680000 perm   341 sec   (1996 perm/sec)   p_kst 6.926471e-04   p_cons 9.514574e-01   p_joint 6.926471e-04

Joint ci ratio: 1.788603e-01	ci left: 6.334376e-04	ci right 7.592214e-04	k: 479	n:690000
Cons ci ratio: 1.066253e-03	ci left: 9.509206e-01	ci right 9.519365e-01	k: 656487	n:690000
KS ci ratio: 1.788603e-01	ci left: 6.334376e-04	ci right 7.592214e-04	k: 479	n:690000
BEST3   690000 perm   349 sec   (1979 perm/sec)   p_kst 6.942029e-04   p_cons 9.514304e-01   p_joint 6.942029e-04

Joint ci ratio: 1.772065e-01	ci left: 6.366728e-04	ci right 7.618048e-04	k: 488	n:700000
Cons ci ratio: 1.058696e-03	ci left: 9.509167e-01	ci right 9.519253e-01	k: 665996	n:700000
KS ci ratio: 1.772065e-01	ci left: 6.366728e-04	ci right 7.618048e-04	k: 488	n:700000
BEST3   700000 perm   357 sec   (1961 perm/sec)   p_kst 6.971429e-04   p_cons 9.514229e-01   p_joint 6.971429e-04

Joint ci ratio: 1.745486e-01	ci left: 6.479027e-04	ci right 7.731305e-04	k: 503	n:710000
Cons ci ratio: 1.051025e-03	ci left: 9.509369e-01	ci right 9.519383e-01	k: 675522	n:710000
KS ci ratio: 1.745486e-01	ci left: 6.479027e-04	ci right 7.731305e-04	k: 503	n:710000
BEST3   710000 perm   366 sec   (1942 perm/sec)   p_kst 7.084507e-04   p_cons 9.514394e-01   p_joint 7.084507e-04

Joint ci ratio: 1.728419e-01	ci left: 6.521892e-04	ci right 7.768846e-04	k: 513	n:720000
Cons ci ratio: 1.043739e-03	ci left: 9.509371e-01	ci right 9.519315e-01	k: 685034	n:720000
KS ci ratio: 1.728419e-01	ci left: 6.521892e-04	ci right 7.768846e-04	k: 513	n:720000
BEST3   720000 perm   374 sec   (1926 perm/sec)   p_kst 7.125000e-04   p_cons 9.514361e-01   p_joint 7.125000e-04

Joint ci ratio: 1.718420e-01	ci left: 6.511197e-04	ci right 7.748157e-04	k: 519	n:730000
Cons ci ratio: 1.037185e-03	ci left: 9.508850e-01	ci right 9.518731e-01	k: 694508	n:730000
KS ci ratio: 1.718420e-01	ci left: 6.511197e-04	ci right 7.748157e-04	k: 519	n:730000
BEST3   730000 perm   382 sec   (1910 perm/sec)   p_kst 7.109589e-04   p_cons 9.513808e-01   p_joint 7.109589e-04

Joint ci ratio: 1.706970e-01	ci left: 6.513748e-04	ci right 7.742098e-04	k: 526	n:740000
Cons ci ratio: 1.029698e-03	ci left: 9.509294e-01	ci right 9.519104e-01	k: 704052	n:740000
KS ci ratio: 1.706970e-01	ci left: 6.513748e-04	ci right 7.742098e-04	k: 526	n:740000
BEST3   740000 perm   391 sec   (1895 perm/sec)   p_kst 7.108108e-04   p_cons 9.514216e-01   p_joint 7.108108e-04

Joint ci ratio: 1.700532e-01	ci left: 6.477956e-04	ci right 7.694477e-04	k: 530	n:750000
Cons ci ratio: 1.023065e-03	ci left: 9.509096e-01	ci right 9.518842e-01	k: 713549	n:750000
KS ci ratio: 1.700532e-01	ci left: 6.477956e-04	ci right 7.694477e-04	k: 530	n:750000
BEST3   750000 perm   399 sec   (1879 perm/sec)   p_kst 7.066667e-04   p_cons 9.513987e-01   p_joint 7.066667e-04

Joint ci ratio: 1.686299e-01	ci left: 6.506123e-04	ci right 7.716668e-04	k: 539	n:760000
Cons ci ratio: 1.016485e-03	ci left: 9.508970e-01	ci right 9.518654e-01	k: 723051	n:760000
KS ci ratio: 1.686299e-01	ci left: 6.506123e-04	ci right 7.716668e-04	k: 539	n:760000
BEST3   760000 perm   408 sec   (1864 perm/sec)   p_kst 7.092105e-04   p_cons 9.513829e-01   p_joint 7.092105e-04

Joint ci ratio: 1.677009e-01	ci left: 6.496270e-04	ci right 7.697650e-04	k: 545	n:770000
Cons ci ratio: 1.009775e-03	ci left: 9.509082e-01	ci right 9.518702e-01	k: 732571	n:770000
KS ci ratio: 1.677009e-01	ci left: 6.496270e-04	ci right 7.697650e-04	k: 545	n:770000
BEST3   770000 perm   416 sec   (1849 perm/sec)   p_kst 7.077922e-04   p_cons 9.513909e-01   p_joint 7.077922e-04

Joint ci ratio: 1.663354e-01	ci left: 6.523547e-04	ci right 7.719165e-04	k: 554	n:780000
Cons ci ratio: 1.003169e-03	ci left: 9.509218e-01	ci right 9.518774e-01	k: 742093	n:780000
KS ci ratio: 1.663354e-01	ci left: 6.523547e-04	ci right 7.719165e-04	k: 554	n:780000
BEST3   780000 perm   425 sec   (1835 perm/sec)   p_kst 7.102564e-04   p_cons 9.514013e-01   p_joint 7.102564e-04

Joint ci ratio: 1.651493e-01	ci left: 6.538036e-04	ci right 7.726916e-04	k: 562	n:790000
Cons ci ratio: 9.974949e-04	ci left: 9.508600e-01	ci right 9.518101e-01	k: 751556	n:790000
KS ci ratio: 1.651493e-01	ci left: 6.538036e-04	ci right 7.726916e-04	k: 562	n:790000
BEST3   790000 perm   434 sec   (1821 perm/sec)   p_kst 7.113924e-04   p_cons 9.513367e-01   p_joint 7.113924e-04

Joint ci ratio: 1.638447e-01	ci left: 6.564180e-04	ci right 7.747456e-04	k: 571	n:800000
Cons ci ratio: 9.912591e-04	ci left: 9.508612e-01	ci right 9.518055e-01	k: 761068	n:800000
KS ci ratio: 1.638447e-01	ci left: 6.564180e-04	ci right 7.747456e-04	k: 571	n:800000
BEST3   800000 perm   443 sec   (1807 perm/sec)   p_kst 7.137500e-04   p_cons 9.513350e-01   p_joint 7.137500e-04

Joint ci ratio: 1.625706e-01	ci left: 6.589715e-04	ci right 7.767453e-04	k: 580	n:810000
Cons ci ratio: 9.847447e-04	ci left: 9.508997e-01	ci right 9.518378e-01	k: 770610	n:810000
KS ci ratio: 1.625706e-01	ci left: 6.589715e-04	ci right 7.767453e-04	k: 580	n:810000
BEST3   810000 perm   452 sec   (1793 perm/sec)   p_kst 7.160494e-04   p_cons 9.513704e-01   p_joint 7.160494e-04

Joint ci ratio: 1.617377e-01	ci left: 6.579554e-04	ci right 7.748865e-04	k: 586	n:820000
Cons ci ratio: 9.785888e-04	ci left: 9.509152e-01	ci right 9.518474e-01	k: 780134	n:820000
KS ci ratio: 1.617377e-01	ci left: 6.579554e-04	ci right 7.748865e-04	k: 586	n:820000
BEST3   820000 perm   461 sec   (1779 perm/sec)   p_kst 7.146341e-04   p_cons 9.513829e-01   p_joint 7.146341e-04

Joint ci ratio: 1.607819e-01	ci left: 6.581216e-04	ci right 7.743243e-04	k: 593	n:830000
Cons ci ratio: 9.727116e-04	ci left: 9.509146e-01	ci right 9.518412e-01	k: 789645	n:830000
KS ci ratio: 1.607819e-01	ci left: 6.581216e-04	ci right 7.743243e-04	k: 593	n:830000
BEST3   830000 perm   470 sec   (1766 perm/sec)   p_kst 7.144578e-04   p_cons 9.513795e-01   p_joint 7.144578e-04

Joint ci ratio: 1.598428e-01	ci left: 6.582858e-04	ci right 7.737736e-04	k: 600	n:840000
Cons ci ratio: 9.669265e-04	ci left: 9.509153e-01	ci right 9.518364e-01	k: 799157	n:840000
KS ci ratio: 1.598428e-01	ci left: 6.582858e-04	ci right 7.737736e-04	k: 600	n:840000
BEST3   840000 perm   479 sec   (1752 perm/sec)   p_kst 7.142857e-04   p_cons 9.513774e-01   p_joint 7.142857e-04

Joint ci ratio: 1.586591e-01	ci left: 6.607076e-04	ci right 7.756801e-04	k: 609	n:850000
Cons ci ratio: 9.615001e-04	ci left: 9.508911e-01	ci right 9.518070e-01	k: 808648	n:850000
KS ci ratio: 1.586591e-01	ci left: 6.607076e-04	ci right 7.756801e-04	k: 609	n:850000
BEST3   850000 perm   489 sec   (1740 perm/sec)   p_kst 7.164706e-04   p_cons 9.513506e-01   p_joint 7.164706e-04

Joint ci ratio: 1.578846e-01	ci left: 6.597254e-04	ci right 7.739134e-04	k: 615	n:860000
Cons ci ratio: 9.558035e-04	ci left: 9.509026e-01	ci right 9.518130e-01	k: 818169	n:860000
KS ci ratio: 1.578846e-01	ci left: 6.597254e-04	ci right 7.739134e-04	k: 615	n:860000
BEST3   860000 perm   498 sec   (1727 perm/sec)   p_kst 7.151163e-04   p_cons 9.513593e-01   p_joint 7.151163e-04

Joint ci ratio: 1.567436e-01	ci left: 6.620800e-04	ci right 7.757695e-04	k: 624	n:870000
Cons ci ratio: 9.503250e-04	ci left: 9.509022e-01	ci right 9.518074e-01	k: 827680	n:870000
KS ci ratio: 1.567436e-01	ci left: 6.620800e-04	ci right 7.757695e-04	k: 624	n:870000
BEST3   870000 perm   507 sec   (1715 perm/sec)   p_kst 7.172414e-04   p_cons 9.513563e-01   p_joint 7.172414e-04

Joint ci ratio: 1.562447e-01	ci left: 6.589237e-04	ci right 7.716774e-04	k: 628	n:880000
Cons ci ratio: 9.450208e-04	ci left: 9.508939e-01	ci right 9.517940e-01	k: 837184	n:880000
KS ci ratio: 1.562447e-01	ci left: 6.589237e-04	ci right 7.716774e-04	k: 628	n:880000
BEST3   880000 perm   517 sec   (1702 perm/sec)   p_kst 7.136364e-04   p_cons 9.513455e-01   p_joint 7.136364e-04

Joint ci ratio: 1.556275e-01	ci left: 6.569188e-04	ci right 7.688440e-04	k: 633	n:890000
Cons ci ratio: 9.396904e-04	ci left: 9.508971e-01	ci right 9.517921e-01	k: 846698	n:890000
KS ci ratio: 1.556275e-01	ci left: 6.569188e-04	ci right 7.688440e-04	k: 633	n:890000
BEST3   890000 perm   527 sec   (1689 perm/sec)   p_kst 7.112360e-04   p_cons 9.513461e-01   p_joint 7.112360e-04

Joint ci ratio: 1.546548e-01	ci left: 6.581636e-04	ci right 7.695349e-04	k: 641	n:900000
Cons ci ratio: 9.346511e-04	ci left: 9.508801e-01	ci right 9.517703e-01	k: 856194	n:900000
KS ci ratio: 1.546548e-01	ci left: 6.581636e-04	ci right 7.695349e-04	k: 641	n:900000
BEST3   900000 perm   537 sec   (1677 perm/sec)   p_kst 7.122222e-04   p_cons 9.513267e-01   p_joint 7.122222e-04

Joint ci ratio: 1.538185e-01	ci left: 6.583264e-04	ci right 7.690674e-04	k: 648	n:910000
Cons ci ratio: 9.295263e-04	ci left: 9.508801e-01	ci right 9.517654e-01	k: 865705	n:910000
KS ci ratio: 1.538185e-01	ci left: 6.583264e-04	ci right 7.690674e-04	k: 648	n:910000
BEST3   910000 perm   546 sec   (1665 perm/sec)   p_kst 7.120879e-04   p_cons 9.513242e-01   p_joint 7.120879e-04

Joint ci ratio: 1.528791e-01	ci left: 6.595327e-04	ci right 7.697370e-04	k: 656	n:920000
Cons ci ratio: 9.245609e-04	ci left: 9.508724e-01	ci right 9.517530e-01	k: 875209	n:920000
KS ci ratio: 1.528791e-01	ci left: 6.595327e-04	ci right 7.697370e-04	k: 656	n:920000
BEST3   920000 perm   557 sec   (1652 perm/sec)   p_kst 7.130435e-04   p_cons 9.513141e-01   p_joint 7.130435e-04

Joint ci ratio: 1.523008e-01	ci left: 6.576120e-04	ci right 7.670418e-04	k: 661	n:930000
Cons ci ratio: 9.200371e-04	ci left: 9.508282e-01	ci right 9.517045e-01	k: 884679	n:930000
KS ci ratio: 1.523008e-01	ci left: 6.576120e-04	ci right 7.670418e-04	k: 661	n:930000
BEST3   930000 perm   567 sec   (1641 perm/sec)   p_kst 7.107527e-04   p_cons 9.512677e-01   p_joint 7.107527e-04

Joint ci ratio: 1.515019e-01	ci left: 6.577799e-04	ci right 7.666114e-04	k: 668	n:940000
Cons ci ratio: 9.149587e-04	ci left: 9.508480e-01	ci right 9.517194e-01	k: 894208	n:940000
KS ci ratio: 1.515019e-01	ci left: 6.577799e-04	ci right 7.666114e-04	k: 668	n:940000
BEST3   940000 perm   577 sec   (1629 perm/sec)   p_kst 7.106383e-04   p_cons 9.512851e-01   p_joint 7.106383e-04

Joint ci ratio: 1.503819e-01	ci left: 6.609847e-04	ci right 7.694653e-04	k: 678	n:950000
Cons ci ratio: 9.101701e-04	ci left: 9.508462e-01	ci right 9.517131e-01	k: 903717	n:950000
KS ci ratio: 1.503819e-01	ci left: 6.609847e-04	ci right 7.694653e-04	k: 678	n:950000
BEST3   950000 perm   587 sec   (1618 perm/sec)   p_kst 7.136842e-04   p_cons 9.512811e-01   p_joint 7.136842e-04

Joint ci ratio: 1.495037e-01	ci left: 6.621202e-04	ci right 7.700958e-04	k: 686	n:960000
Cons ci ratio: 9.053338e-04	ci left: 9.508571e-01	ci right 9.517193e-01	k: 913238	n:960000
KS ci ratio: 1.495037e-01	ci left: 6.621202e-04	ci right 7.700958e-04	k: 686	n:960000
BEST3   960000 perm   598 sec   (1606 perm/sec)   p_kst 7.145833e-04   p_cons 9.512896e-01   p_joint 7.145833e-04

Joint ci ratio: 1.486407e-01	ci left: 6.632340e-04	ci right 7.707115e-04	k: 694	n:970000
Cons ci ratio: 9.009945e-04	ci left: 9.508242e-01	ci right 9.516823e-01	k: 922717	n:970000
KS ci ratio: 1.486407e-01	ci left: 6.632340e-04	ci right 7.707115e-04	k: 694	n:970000
BEST3   970000 perm   608 sec   (1595 perm/sec)   p_kst 7.154639e-04   p_cons 9.512546e-01   p_joint 7.154639e-04

Joint ci ratio: 1.115205e-01	ci left: 1.188948e-03	ci right 1.330352e-03	k: 1233	n:980000
Cons ci ratio: 8.965390e-04	ci left: 9.508105e-01	ci right 9.516644e-01	k: 932214	n:980000
KS ci ratio: 1.477925e-01	ci left: 6.643269e-04	ci right 7.713128e-04	k: 702	n:980000
BEST3   980000 perm   618 sec   (1585 perm/sec)   p_kst 7.163265e-04   p_cons 9.512388e-01   p_joint 1.258163e-03

Joint ci ratio: 1.471659e-01	ci left: 6.634535e-04	ci right 7.698059e-04	k: 708	n:990000
Cons ci ratio: 8.919838e-04	ci left: 9.508143e-01	ci right 9.516638e-01	k: 941728	n:990000
KS ci ratio: 1.471659e-01	ci left: 6.634535e-04	ci right 7.698059e-04	k: 708	n:990000
BEST3   990000 perm   629 sec   (1574 perm/sec)   p_kst 7.151515e-04   p_cons 9.512404e-01   p_joint 7.151515e-04

Joint ci ratio: 1.459357e-01	ci left: 6.683790e-04	ci right 7.745474e-04	k: 720	n:1000000
Cons ci ratio: 8.868657e-04	ci left: 9.508844e-01	ci right 9.517290e-01	k: 951308	n:1000000
KS ci ratio: 1.459357e-01	ci left: 6.683790e-04	ci right 7.745474e-04	k: 720	n:1000000
BEST3   1000000 perm   640 sec   (1563 perm/sec)   p_kst 7.200000e-04   p_cons 9.513080e-01   p_joint 7.200000e-04

Joint ci ratio: 1.449339e-01	ci left: 6.713022e-04	ci right 7.771395e-04	k: 730	n:1010000
Cons ci ratio: 8.826537e-04	ci left: 9.508665e-01	ci right 9.517071e-01	k: 960801	n:1010000
KS ci ratio: 1.449339e-01	ci left: 6.713022e-04	ci right 7.771395e-04	k: 730	n:1010000
BEST3   1010000 perm   650 sec   (1553 perm/sec)   p_kst 7.227723e-04   p_cons 9.512881e-01   p_joint 7.227723e-04

Joint ci ratio: 1.439524e-01	ci left: 6.741705e-04	ci right 7.796784e-04	k: 740	n:1020000
Cons ci ratio: 8.784266e-04	ci left: 9.508569e-01	ci right 9.516935e-01	k: 970302	n:1020000
KS ci ratio: 1.439524e-01	ci left: 6.741705e-04	ci right 7.796784e-04	k: 740	n:1020000
BEST3   1020000 perm   661 sec   (1542 perm/sec)   p_kst 7.254902e-04   p_cons 9.512765e-01   p_joint 7.254902e-04

Joint ci ratio: 1.428004e-01	ci left: 6.788578e-04	ci right 7.841767e-04	k: 752	n:1030000
Cons ci ratio: 8.743603e-04	ci left: 9.508368e-01	ci right 9.516694e-01	k: 979792	n:1030000
KS ci ratio: 1.428004e-01	ci left: 6.788578e-04	ci right 7.841767e-04	k: 752	n:1030000
BEST3   1030000 perm   672 sec   (1532 perm/sec)   p_kst 7.300971e-04   p_cons 9.512544e-01   p_joint 7.300971e-04

Joint ci ratio: 1.422350e-01	ci left: 6.778938e-04	ci right 7.826114e-04	k: 758	n:1040000
Cons ci ratio: 8.701965e-04	ci left: 9.508334e-01	ci right 9.516621e-01	k: 989299	n:1040000
KS ci ratio: 1.422350e-01	ci left: 6.778938e-04	ci right 7.826114e-04	k: 758	n:1040000
BEST3   1040000 perm   683 sec   (1522 perm/sec)   p_kst 7.288462e-04   p_cons 9.512490e-01   p_joint 7.288462e-04

Joint ci ratio: 1.416762e-01	ci left: 6.769490e-04	ci right 7.810751e-04	k: 764	n:1050000
Cons ci ratio: 8.659937e-04	ci left: 9.508407e-01	ci right 9.516654e-01	k: 998817	n:1050000
KS ci ratio: 1.416762e-01	ci left: 6.769490e-04	ci right 7.810751e-04	k: 764	n:1050000
BEST3   1050000 perm   694 sec   (1512 perm/sec)   p_kst 7.276190e-04   p_cons 9.512543e-01   p_joint 7.276190e-04

Joint ci ratio: 1.414917e-01	ci left: 6.723826e-04	ci right 7.756602e-04	k: 766	n:1060000
Cons ci ratio: 8.615092e-04	ci left: 9.508848e-01	ci right 9.517052e-01	k: 1008374	n:1060000
KS ci ratio: 1.414917e-01	ci left: 6.723826e-04	ci right 7.756602e-04	k: 766	n:1060000
BEST3   1060000 perm   705 sec   (1503 perm/sec)   p_kst 7.226415e-04   p_cons 9.512962e-01   p_joint 7.226415e-04

Joint ci ratio: 1.407595e-01	ci left: 6.733113e-04	ci right 7.761514e-04	k: 774	n:1070000
Cons ci ratio: 8.575169e-04	ci left: 9.508820e-01	ci right 9.516987e-01	k: 1017882	n:1070000
KS ci ratio: 1.407595e-01	ci left: 6.733113e-04	ci right 7.761514e-04	k: 774	n:1070000
BEST3   1070000 perm   717 sec   (1493 perm/sec)   p_kst 7.233645e-04   p_cons 9.512916e-01   p_joint 7.233645e-04

Joint ci ratio: 1.400385e-01	ci left: 6.742242e-04	ci right 7.766323e-04	k: 782	n:1080000
Cons ci ratio: 8.536648e-04	ci left: 9.508701e-01	ci right 9.516831e-01	k: 1027380	n:1080000
KS ci ratio: 1.400385e-01	ci left: 6.742242e-04	ci right 7.766323e-04	k: 782	n:1080000
BEST3   1080000 perm   728 sec   (1483 perm/sec)   p_kst 7.240741e-04   p_cons 9.512778e-01   p_joint 7.240741e-04

Joint ci ratio: 1.393285e-01	ci left: 6.751216e-04	ci right 7.771030e-04	k: 790	n:1090000
Cons ci ratio: 8.497968e-04	ci left: 9.508657e-01	ci right 9.516750e-01	k: 1036886	n:1090000
KS ci ratio: 1.393285e-01	ci left: 6.751216e-04	ci right 7.771030e-04	k: 790	n:1090000
BEST3   1090000 perm   740 sec   (1473 perm/sec)   p_kst 7.247706e-04   p_cons 9.512716e-01   p_joint 7.247706e-04

Joint ci ratio: 1.388031e-01	ci left: 6.742489e-04	ci right 7.756826e-04	k: 796	n:1100000
Cons ci ratio: 8.458399e-04	ci left: 9.508770e-01	ci right 9.516825e-01	k: 1046409	n:1100000
KS ci ratio: 1.388031e-01	ci left: 6.742489e-04	ci right 7.756826e-04	k: 796	n:1100000
BEST3   1100000 perm   751 sec   (1464 perm/sec)   p_kst 7.236364e-04   p_cons 9.512809e-01   p_joint 7.236364e-04

Joint ci ratio: 9.905156e-02	ci left: 1.339203e-03	ci right 1.479636e-03	k: 1563	n:1110000
Cons ci ratio: 8.423469e-04	ci left: 9.508428e-01	ci right 9.516449e-01	k: 1055882	n:1110000
KS ci ratio: 1.383699e-01	ci left: 6.725228e-04	ci right 7.733551e-04	k: 801	n:1110000
BEST3   1110000 perm   763 sec   (1455 perm/sec)   p_kst 7.216216e-04   p_cons 9.512450e-01   p_joint 1.408108e-03

Joint ci ratio: 9.851746e-02	ci left: 1.342049e-03	ci right 1.481978e-03	k: 1580	n:1120000
Cons ci ratio: 8.388721e-04	ci left: 9.508119e-01	ci right 9.516107e-01	k: 1065358	n:1120000
KS ci ratio: 1.376849e-01	ci left: 6.734144e-04	ci right 7.738395e-04	k: 809	n:1120000
BEST3   1120000 perm   775 sec   (1446 perm/sec)   p_kst 7.223214e-04   p_cons 9.512125e-01   p_joint 1.410714e-03

Joint ci ratio: 9.811495e-02	ci left: 1.341394e-03	ci right 1.480650e-03	k: 1593	n:1130000
Cons ci ratio: 8.354157e-04	ci left: 9.507843e-01	ci right 9.515798e-01	k: 1074837	n:1130000
KS ci ratio: 1.371778e-01	ci left: 6.725821e-04	ci right 7.724836e-04	k: 815	n:1130000
BEST3   1130000 perm   786 sec   (1437 perm/sec)   p_kst 7.212389e-04   p_cons 9.511832e-01   p_joint 1.409735e-03

Joint ci ratio: 9.741428e-02	ci left: 1.349310e-03	ci right 1.488330e-03	k: 1616	n:1140000
Cons ci ratio: 8.315536e-04	ci left: 9.508073e-01	ci right 9.515992e-01	k: 1084373	n:1140000
KS ci ratio: 1.361799e-01	ci left: 6.768488e-04	ci right 7.765933e-04	k: 827	n:1140000
BEST3   1140000 perm   798 sec   (1429 perm/sec)   p_kst 7.254386e-04   p_cons 9.512044e-01   p_joint 1.417544e-03

Joint ci ratio: 9.705491e-02	ci left: 1.347758e-03	ci right 1.486077e-03	k: 1628	n:1150000
Cons ci ratio: 8.277987e-04	ci left: 9.508239e-01	ci right 9.516121e-01	k: 1093902	n:1150000
KS ci ratio: 1.355267e-01	ci left: 6.776832e-04	ci right 7.770331e-04	k: 835	n:1150000
BEST3   1150000 perm   810 sec   (1420 perm/sec)   p_kst 7.260870e-04   p_cons 9.512191e-01   p_joint 1.415652e-03

Joint ci ratio: 9.664053e-02	ci left: 1.347916e-03	ci right 1.485627e-03	k: 1642	n:1160000
Cons ci ratio: 8.245458e-04	ci left: 9.507891e-01	ci right 9.515742e-01	k: 1103372	n:1160000
KS ci ratio: 1.349628e-01	ci left: 6.776714e-04	ci right 7.765731e-04	k: 842	n:1160000
BEST3   1160000 perm   822 sec   (1412 perm/sec)   p_kst 7.258621e-04   p_cons 9.511828e-01   p_joint 1.415517e-03

Joint ci ratio: 9.608635e-02	ci left: 1.352244e-03	ci right 1.489560e-03	k: 1661	n:1170000
Cons ci ratio: 8.209376e-04	ci left: 9.507995e-01	ci right 9.515812e-01	k: 1112894	n:1170000
KS ci ratio: 1.340121e-01	ci left: 6.817908e-04	ci right 7.805369e-04	k: 854	n:1170000
BEST3   1170000 perm   834 sec   (1403 perm/sec)   p_kst 7.299145e-04   p_cons 9.511915e-01   p_joint 1.419658e-03

Joint ci ratio: 9.557006e-02	ci left: 1.355673e-03	ci right 1.492556e-03	k: 1679	n:1180000
Cons ci ratio: 8.174957e-04	ci left: 9.507961e-01	ci right 9.515745e-01	k: 1122400	n:1180000
KS ci ratio: 1.332351e-01	ci left: 6.842043e-04	ci right 7.826798e-04	k: 864	n:1180000
BEST3   1180000 perm   846 sec   (1395 perm/sec)   p_kst 7.322034e-04   p_cons 9.511864e-01   p_joint 1.422881e-03

Joint ci ratio: 1.328518e-01	ci left: 6.825164e-04	ci right 7.804442e-04	k: 869	n:1190000
Cons ci ratio: 8.138537e-04	ci left: 9.508207e-01	ci right 9.515956e-01	k: 1131939	n:1190000
KS ci ratio: 1.328518e-01	ci left: 6.825164e-04	ci right 7.804442e-04	k: 869	n:1190000
BEST3   1190000 perm   858 sec   (1387 perm/sec)   p_kst 7.302521e-04   p_cons 9.512092e-01   p_joint 7.302521e-04

Joint ci ratio: 1.323961e-01	ci left: 6.816629e-04	ci right 7.791063e-04	k: 875	n:1200000
Cons ci ratio: 8.104052e-04	ci left: 9.508281e-01	ci right 9.515998e-01	k: 1141458	n:1200000
KS ci ratio: 1.323961e-01	ci left: 6.816629e-04	ci right 7.791063e-04	k: 875	n:1200000
BEST3   1200000 perm   870 sec   (1379 perm/sec)   p_kst 7.291667e-04   p_cons 9.512150e-01   p_joint 7.291667e-04

Joint ci ratio: 1.317956e-01	ci left: 6.824224e-04	ci right 7.794973e-04	k: 883	n:1210000
Cons ci ratio: 8.070936e-04	ci left: 9.508246e-01	ci right 9.515931e-01	k: 1150964	n:1210000
KS ci ratio: 1.317956e-01	ci left: 6.824224e-04	ci right 7.794973e-04	k: 883	n:1210000
BEST3   1210000 perm   883 sec   (1370 perm/sec)   p_kst 7.297521e-04   p_cons 9.512099e-01   p_joint 7.297521e-04

Joint ci ratio: 1.311297e-01	ci left: 6.839633e-04	ci right 7.807275e-04	k: 892	n:1220000
Cons ci ratio: 8.040494e-04	ci left: 9.507948e-01	ci right 9.515604e-01	k: 1160438	n:1220000
KS ci ratio: 1.311297e-01	ci left: 6.839633e-04	ci right 7.807275e-04	k: 892	n:1220000
BEST3   1220000 perm   895 sec   (1362 perm/sec)   p_kst 7.311475e-04   p_cons 9.511787e-01   p_joint 7.311475e-04

Joint ci ratio: 1.306915e-01	ci left: 6.831209e-04	ci right 7.794178e-04	k: 898	n:1230000
Cons ci ratio: 8.006886e-04	ci left: 9.508064e-01	ci right 9.515688e-01	k: 1169962	n:1230000
KS ci ratio: 1.306915e-01	ci left: 6.831209e-04	ci right 7.794178e-04	k: 898	n:1230000
BEST3   1230000 perm   908 sec   (1355 perm/sec)   p_kst 7.300813e-04   p_cons 9.511886e-01   p_joint 7.300813e-04

Joint ci ratio: 1.301138e-01	ci left: 6.838530e-04	ci right 7.797941e-04	k: 906	n:1240000
Cons ci ratio: 7.973003e-04	ci left: 9.508258e-01	ci right 9.515850e-01	k: 1179496	n:1240000
KS ci ratio: 1.301138e-01	ci left: 6.838530e-04	ci right 7.797941e-04	k: 906	n:1240000
BEST3   1240000 perm   921 sec   (1347 perm/sec)   p_kst 7.306452e-04   p_cons 9.512065e-01   p_joint 7.306452e-04

Joint ci ratio: 1.294023e-01	ci left: 6.861225e-04	ci right 7.818153e-04	k: 916	n:1250000
Cons ci ratio: 7.939819e-04	ci left: 9.508417e-01	ci right 9.515978e-01	k: 1189026	n:1250000
KS ci ratio: 1.294023e-01	ci left: 6.861225e-04	ci right 7.818153e-04	k: 916	n:1250000
BEST3   1250000 perm   933 sec   (1339 perm/sec)   p_kst 7.328000e-04   p_cons 9.512208e-01   p_joint 7.328000e-04

Joint ci ratio: 1.291211e-01	ci left: 6.837490e-04	ci right 7.788877e-04	k: 920	n:1260000
Cons ci ratio: 7.908668e-04	ci left: 9.508383e-01	ci right 9.515914e-01	k: 1198532	n:1260000
KS ci ratio: 1.291211e-01	ci left: 6.837490e-04	ci right 7.788877e-04	k: 920	n:1260000
BEST3   1260000 perm   946 sec   (1332 perm/sec)   p_kst 7.301587e-04   p_cons 9.512159e-01   p_joint 7.301587e-04

Joint ci ratio: 1.285639e-01	ci left: 6.844614e-04	ci right 7.792568e-04	k: 928	n:1270000
Cons ci ratio: 7.877280e-04	ci left: 9.508420e-01	ci right 9.515921e-01	k: 1208047	n:1270000
KS ci ratio: 1.285639e-01	ci left: 6.844614e-04	ci right 7.792568e-04	k: 928	n:1270000
BEST3   1270000 perm   959 sec   (1324 perm/sec)   p_kst 7.307087e-04   p_cons 9.512181e-01   p_joint 7.307087e-04

Joint ci ratio: 1.282195e-01	ci left: 6.828948e-04	ci right 7.772005e-04	k: 933	n:1280000
Cons ci ratio: 7.845139e-04	ci left: 9.508591e-01	ci right 9.516061e-01	k: 1217579	n:1280000
KS ci ratio: 1.282195e-01	ci left: 6.828948e-04	ci right 7.772005e-04	k: 933	n:1280000
BEST3   1280000 perm   972 sec   (1317 perm/sec)   p_kst 7.289062e-04   p_cons 9.512336e-01   p_joint 7.289062e-04

Joint ci ratio: 1.279459e-01	ci left: 6.806024e-04	ci right 7.743759e-04	k: 937	n:1290000
Cons ci ratio: 7.811429e-04	ci left: 9.508992e-01	ci right 9.516430e-01	k: 1227141	n:1290000
KS ci ratio: 1.279459e-01	ci left: 6.806024e-04	ci right 7.743759e-04	k: 937	n:1290000
BEST3   1290000 perm   986 sec   (1309 perm/sec)   p_kst 7.263566e-04   p_cons 9.512721e-01   p_joint 7.263566e-04

Joint ci ratio: 1.275388e-01	ci left: 6.798349e-04	ci right 7.731819e-04	k: 943	n:1300000
Cons ci ratio: 7.782793e-04	ci left: 9.508831e-01	ci right 9.516242e-01	k: 1236631	n:1300000
KS ci ratio: 1.275388e-01	ci left: 6.798349e-04	ci right 7.731819e-04	k: 943	n:1300000
BEST3   1300000 perm   1000 sec   (1300 perm/sec)   p_kst 7.253846e-04   p_cons 9.512546e-01   p_joint 7.253846e-04

Joint ci ratio: 1.270017e-01	ci left: 6.805577e-04	ci right 7.735810e-04	k: 951	n:1310000
Cons ci ratio: 7.753257e-04	ci left: 9.508818e-01	ci right 9.516200e-01	k: 1246140	n:1310000
KS ci ratio: 1.270017e-01	ci left: 6.805577e-04	ci right 7.735810e-04	k: 951	n:1310000
BEST3   1310000 perm   1013 sec   (1293 perm/sec)   p_kst 7.259542e-04   p_cons 9.512519e-01   p_joint 7.259542e-04

Joint ci ratio: 1.264055e-01	ci left: 6.820041e-04	ci right 7.747546e-04	k: 960	n:1320000
Cons ci ratio: 7.724370e-04	ci left: 9.508767e-01	ci right 9.516122e-01	k: 1255644	n:1320000
KS ci ratio: 1.264055e-01	ci left: 6.820041e-04	ci right 7.747546e-04	k: 960	n:1320000
BEST3   1320000 perm   1027 sec   (1285 perm/sec)   p_kst 7.272727e-04   p_cons 9.512455e-01   p_joint 7.272727e-04

Joint ci ratio: 1.259477e-01	ci left: 6.819733e-04	ci right 7.743586e-04	k: 967	n:1330000
Cons ci ratio: 7.697175e-04	ci left: 9.508551e-01	ci right 9.515880e-01	k: 1265126	n:1330000
KS ci ratio: 1.259477e-01	ci left: 6.819733e-04	ci right 7.743586e-04	k: 967	n:1330000
BEST3   1330000 perm   1040 sec   (1278 perm/sec)   p_kst 7.270677e-04   p_cons 9.512226e-01   p_joint 7.270677e-04

Joint ci ratio: 1.255592e-01	ci left: 6.812207e-04	ci right 7.731982e-04	k: 973	n:1340000
Cons ci ratio: 7.670572e-04	ci left: 9.508301e-01	ci right 9.515605e-01	k: 1274603	n:1340000
KS ci ratio: 1.255592e-01	ci left: 6.812207e-04	ci right 7.731982e-04	k: 973	n:1340000
BEST3   1340000 perm   1054 sec   (1272 perm/sec)   p_kst 7.261194e-04   p_cons 9.511963e-01   p_joint 7.261194e-04

Joint ci ratio: 1.252383e-01	ci left: 6.797621e-04	ci right 7.712907e-04	k: 978	n:1350000
Cons ci ratio: 7.641376e-04	ci left: 9.508404e-01	ci right 9.515680e-01	k: 1284127	n:1350000
KS ci ratio: 1.252383e-01	ci left: 6.797621e-04	ci right 7.712907e-04	k: 978	n:1350000
BEST3   1350000 perm   1067 sec   (1265 perm/sec)   p_kst 7.244444e-04   p_cons 9.512052e-01   p_joint 7.244444e-04

Joint ci ratio: 1.246665e-01	ci left: 6.811747e-04	ci right 7.724438e-04	k: 987	n:1360000
Cons ci ratio: 7.615404e-04	ci left: 9.508152e-01	ci right 9.515403e-01	k: 1293603	n:1360000
KS ci ratio: 1.246665e-01	ci left: 6.811747e-04	ci right 7.724438e-04	k: 987	n:1360000
BEST3   1360000 perm   1081 sec   (1258 perm/sec)   p_kst 7.257353e-04   p_cons 9.511787e-01   p_joint 7.257353e-04

Joint ci ratio: 1.241647e-01	ci left: 6.818603e-04	ci right 7.728266e-04	k: 995	n:1370000
Cons ci ratio: 7.587070e-04	ci left: 9.508225e-01	ci right 9.515449e-01	k: 1303123	n:1370000
KS ci ratio: 1.241647e-01	ci left: 6.818603e-04	ci right 7.728266e-04	k: 995	n:1370000
BEST3   1370000 perm   1095 sec   (1251 perm/sec)   p_kst 7.262774e-04   p_cons 9.511847e-01   p_joint 7.262774e-04

Joint ci ratio: 1.234846e-01	ci left: 6.846434e-04	ci right 7.754441e-04	k: 1006	n:1380000
Cons ci ratio: 7.559757e-04	ci left: 9.508210e-01	ci right 9.515408e-01	k: 1312631	n:1380000
KS ci ratio: 1.234846e-01	ci left: 6.846434e-04	ci right 7.754441e-04	k: 1006	n:1380000
BEST3   1380000 perm   1109 sec   (1245 perm/sec)   p_kst 7.289855e-04   p_cons 9.511819e-01   p_joint 7.289855e-04

Joint ci ratio: 1.229969e-01	ci left: 6.852959e-04	ci right 7.757981e-04	k: 1014	n:1390000
Cons ci ratio: 7.533437e-04	ci left: 9.508109e-01	ci right 9.515282e-01	k: 1322127	n:1390000
KS ci ratio: 1.229969e-01	ci left: 6.852959e-04	ci right 7.757981e-04	k: 1014	n:1390000
BEST3   1390000 perm   1123 sec   (1238 perm/sec)   p_kst 7.294964e-04   p_cons 9.511705e-01   p_joint 7.294964e-04

Joint ci ratio: 1.225150e-01	ci left: 6.859398e-04	ci right 7.761463e-04	k: 1022	n:1400000
Cons ci ratio: 7.505427e-04	ci left: 9.508253e-01	ci right 9.515399e-01	k: 1331657	n:1400000
KS ci ratio: 1.225150e-01	ci left: 6.859398e-04	ci right 7.761463e-04	k: 1022	n:1400000
BEST3   1400000 perm   1137 sec   (1232 perm/sec)   p_kst 7.300000e-04   p_cons 9.511836e-01   p_joint 7.300000e-04

Joint ci ratio: 8.743854e-02	ci left: 1.361153e-03	ci right 1.486299e-03	k: 2006	n:1410000
Cons ci ratio: 7.479612e-04	ci left: 9.508161e-01	ci right 9.515282e-01	k: 1341154	n:1410000
KS ci ratio: 1.222168e-01	ci left: 6.845125e-04	ci right 7.742964e-04	k: 1027	n:1410000
BEST3   1410000 perm   1151 sec   (1225 perm/sec)   p_kst 7.283688e-04   p_cons 9.511730e-01   p_joint 1.422695e-03

Joint ci ratio: 8.717838e-02	ci left: 1.359834e-03	ci right 1.484468e-03	k: 2018	n:1420000
Cons ci ratio: 7.452535e-04	ci left: 9.508260e-01	ci right 9.515355e-01	k: 1350678	n:1420000
KS ci ratio: 1.218618e-01	ci left: 6.837883e-04	ci right 7.731979e-04	k: 1033	n:1420000
BEST3   1420000 perm   1165 sec   (1218 perm/sec)   p_kst 7.274648e-04   p_cons 9.511817e-01   p_joint 1.421127e-03

Joint ci ratio: 8.683493e-02	ci left: 1.361270e-03	ci right 1.485519e-03	k: 2034	n:1430000
Cons ci ratio: 7.428154e-04	ci left: 9.508056e-01	ci right 9.515128e-01	k: 1360159	n:1430000
KS ci ratio: 1.212766e-01	ci left: 6.857870e-04	ci right 7.749964e-04	k: 1043	n:1430000
BEST3   1430000 perm   1180 sec   (1212 perm/sec)   p_kst 7.293706e-04   p_cons 9.511601e-01   p_joint 1.422378e-03

Joint ci ratio: 8.662249e-02	ci left: 1.358610e-03	ci right 1.482298e-03	k: 2044	n:1440000
Cons ci ratio: 7.400967e-04	ci left: 9.508239e-01	ci right 9.515285e-01	k: 1369695	n:1440000
KS ci ratio: 1.210451e-01	ci left: 6.837181e-04	ci right 7.724765e-04	k: 1047	n:1440000
BEST3   1440000 perm   1194 sec   (1206 perm/sec)   p_kst 7.270833e-04   p_cons 9.511771e-01   p_joint 1.419444e-03

Joint ci ratio: 8.632750e-02	ci left: 1.358687e-03	ci right 1.481939e-03	k: 2058	n:1450000
Cons ci ratio: 7.374623e-04	ci left: 9.508349e-01	ci right 9.515371e-01	k: 1379221	n:1450000
KS ci ratio: 1.205857e-01	ci left: 6.843534e-04	ci right 7.728329e-04	k: 1055	n:1450000
BEST3   1450000 perm   1208 sec   (1200 perm/sec)   p_kst 7.275862e-04   p_cons 9.511869e-01   p_joint 1.419310e-03

Joint ci ratio: 8.603551e-02	ci left: 1.358763e-03	ci right 1.481584e-03	k: 2072	n:1460000
Cons ci ratio: 7.349858e-04	ci left: 9.508294e-01	ci right 9.515291e-01	k: 1388723	n:1460000
KS ci ratio: 1.200750e-01	ci left: 6.856449e-04	ci right 7.738893e-04	k: 1064	n:1460000
BEST3   1460000 perm   1223 sec   (1194 perm/sec)   p_kst 7.287671e-04   p_cons 9.511801e-01   p_joint 1.419178e-03

Joint ci ratio: 8.564378e-02	ci left: 1.362168e-03	ci right 1.484708e-03	k: 2091	n:1470000
Cons ci ratio: 7.326790e-04	ci left: 9.508054e-01	ci right 9.515030e-01	k: 1398198	n:1470000
KS ci ratio: 1.194040e-01	ci left: 6.888995e-04	ci right 7.770324e-04	k: 1076	n:1470000
BEST3   1470000 perm   1237 sec   (1188 perm/sec)   p_kst 7.319728e-04   p_cons 9.511551e-01   p_joint 1.422449e-03

Joint ci ratio: 8.541960e-02	ci left: 1.360237e-03	ci right 1.482268e-03	k: 2102	n:1480000
Cons ci ratio: 7.302184e-04	ci left: 9.508042e-01	ci right 9.514994e-01	k: 1407706	n:1480000
KS ci ratio: 1.190728e-01	ci left: 6.881779e-04	ci right 7.759571e-04	k: 1082	n:1480000
BEST3   1480000 perm   1252 sec   (1182 perm/sec)   p_kst 7.310811e-04   p_cons 9.511527e-01   p_joint 1.420270e-03

Joint ci ratio: 1.185811e-01	ci left: 6.894200e-04	ci right 7.769690e-04	k: 1091	n:1490000
Cons ci ratio: 7.277929e-04	ci left: 9.508017e-01	ci right 9.514946e-01	k: 1417212	n:1490000
KS ci ratio: 1.185811e-01	ci left: 6.894200e-04	ci right 7.769690e-04	k: 1091	n:1490000
BEST3   1490000 perm   1267 sec   (1176 perm/sec)   p_kst 7.322148e-04   p_cons 9.511490e-01   p_joint 7.322148e-04

Joint ci ratio: 1.180954e-01	ci left: 6.906463e-04	ci right 7.779667e-04	k: 1100	n:1500000
Cons ci ratio: 7.254070e-04	ci left: 9.507972e-01	ci right 9.514878e-01	k: 1426715	n:1500000
KS ci ratio: 1.180954e-01	ci left: 6.906463e-04	ci right 7.779667e-04	k: 1100	n:1500000
BEST3   1500000 perm   1282 sec   (1170 perm/sec)   p_kst 7.333333e-04   p_cons 9.511433e-01   p_joint 7.333333e-04

Joint ci ratio: 1.177749e-01	ci left: 6.899287e-04	ci right 7.769053e-04	k: 1106	n:1510000
Cons ci ratio: 7.230444e-04	ci left: 9.507927e-01	ci right 9.514811e-01	k: 1436218	n:1510000
KS ci ratio: 1.177749e-01	ci left: 6.899287e-04	ci right 7.769053e-04	k: 1106	n:1510000
BEST3   1510000 perm   1297 sec   (1164 perm/sec)   p_kst 7.324503e-04   p_cons 9.511377e-01   p_joint 7.324503e-04

Joint ci ratio: 1.175099e-01	ci left: 6.885824e-04	ci right 7.751803e-04	k: 1111	n:1520000
Cons ci ratio: 7.207507e-04	ci left: 9.507824e-01	ci right 9.514685e-01	k: 1445712	n:1520000
KS ci ratio: 1.175099e-01	ci left: 6.885824e-04	ci right 7.751803e-04	k: 1111	n:1520000
BEST3   1520000 perm   1312 sec   (1159 perm/sec)   p_kst 7.309211e-04   p_cons 9.511263e-01   p_joint 7.309211e-04

Joint ci ratio: 1.172993e-01	ci left: 6.866194e-04	ci right 7.728050e-04	k: 1115	n:1530000
Cons ci ratio: 7.184432e-04	ci left: 9.507768e-01	ci right 9.514607e-01	k: 1455213	n:1530000
KS ci ratio: 1.172993e-01	ci left: 6.866194e-04	ci right 7.728050e-04	k: 1115	n:1530000
BEST3   1530000 perm   1327 sec   (1153 perm/sec)   p_kst 7.287582e-04   p_cons 9.511196e-01   p_joint 7.287582e-04

Joint ci ratio: 1.169331e-01	ci left: 6.865731e-04	ci right 7.724653e-04	k: 1122	n:1540000
Cons ci ratio: 7.161028e-04	ci left: 9.507784e-01	ci right 9.514601e-01	k: 1464725	n:1540000
KS ci ratio: 1.169331e-01	ci left: 6.865731e-04	ci right 7.724653e-04	k: 1122	n:1540000
BEST3   1540000 perm   1342 sec   (1148 perm/sec)   p_kst 7.285714e-04   p_cons 9.511201e-01   p_joint 7.285714e-04

Joint ci ratio: 1.165188e-01	ci left: 6.871542e-04	ci right 7.727936e-04	k: 1130	n:1550000
Cons ci ratio: 7.137801e-04	ci left: 9.507807e-01	ci right 9.514602e-01	k: 1474238	n:1550000
KS ci ratio: 1.165188e-01	ci left: 6.871542e-04	ci right 7.727936e-04	k: 1130	n:1550000
BEST3   1550000 perm   1357 sec   (1142 perm/sec)   p_kst 7.290323e-04   p_cons 9.511213e-01   p_joint 7.290323e-04

Joint ci ratio: 1.162110e-01	ci left: 6.864836e-04	ci right 7.717978e-04	k: 1136	n:1560000
Cons ci ratio: 7.113769e-04	ci left: 9.507964e-01	ci right 9.514737e-01	k: 1483772	n:1560000
KS ci ratio: 1.162110e-01	ci left: 6.864836e-04	ci right 7.717978e-04	k: 1136	n:1560000
BEST3   1560000 perm   1373 sec   (1136 perm/sec)   p_kst 7.282051e-04   p_cons 9.511359e-01   p_joint 7.282051e-04

Joint ci ratio: 1.158043e-01	ci left: 6.870588e-04	ci right 7.721252e-04	k: 1144	n:1570000
Cons ci ratio: 7.091094e-04	ci left: 9.507973e-01	ci right 9.514724e-01	k: 1493283	n:1570000
KS ci ratio: 1.158043e-01	ci left: 6.870588e-04	ci right 7.721252e-04	k: 1144	n:1570000
BEST3   1570000 perm   1388 sec   (1131 perm/sec)   p_kst 7.286624e-04   p_cons 9.511357e-01   p_joint 7.286624e-04

Joint ci ratio: 1.153518e-01	ci left: 6.882419e-04	ci right 7.730991e-04	k: 1153	n:1580000
Cons ci ratio: 7.068635e-04	ci left: 9.507981e-01	ci right 9.514711e-01	k: 1502794	n:1580000
KS ci ratio: 1.153518e-01	ci left: 6.882419e-04	ci right 7.730991e-04	k: 1153	n:1580000
BEST3   1580000 perm   1404 sec   (1126 perm/sec)   p_kst 7.297468e-04   p_cons 9.511354e-01   p_joint 7.297468e-04

Joint ci ratio: 1.149540e-01	ci left: 6.887998e-04	ci right 7.734132e-04	k: 1161	n:1590000
Cons ci ratio: 7.045530e-04	ci left: 9.508103e-01	ci right 9.514811e-01	k: 1512323	n:1590000
KS ci ratio: 1.149540e-01	ci left: 6.887998e-04	ci right 7.734132e-04	k: 1161	n:1590000
BEST3   1590000 perm   1419 sec   (1120 perm/sec)   p_kst 7.301887e-04   p_cons 9.511465e-01   p_joint 7.301887e-04

Joint ci ratio: 1.146093e-01	ci left: 6.887442e-04	ci right 7.730799e-04	k: 1168	n:1600000
Cons ci ratio: 7.022083e-04	ci left: 9.508299e-01	ci right 9.514984e-01	k: 1521864	n:1600000
KS ci ratio: 1.146093e-01	ci left: 6.887442e-04	ci right 7.730799e-04	k: 1168	n:1600000
BEST3   1600000 perm   1435 sec   (1115 perm/sec)   p_kst 7.300000e-04   p_cons 9.511650e-01   p_joint 7.300000e-04

Joint ci ratio: 1.144627e-01	ci left: 6.862762e-04	ci right 7.701949e-04	k: 1171	n:1610000
Cons ci ratio: 7.000085e-04	ci left: 9.508331e-01	ci right 9.514995e-01	k: 1531379	n:1610000
KS ci ratio: 1.144627e-01	ci left: 6.862762e-04	ci right 7.701949e-04	k: 1171	n:1610000
BEST3   1610000 perm   1451 sec   (1110 perm/sec)   p_kst 7.273292e-04   p_cons 9.511671e-01   p_joint 7.273292e-04

Joint ci ratio: 1.142194e-01	ci left: 6.850381e-04	ci right 7.686153e-04	k: 1176	n:1620000
Cons ci ratio: 6.978059e-04	ci left: 9.508392e-01	ci right 9.515036e-01	k: 1540899	n:1620000
KS ci ratio: 1.142194e-01	ci left: 6.850381e-04	ci right 7.686153e-04	k: 1176	n:1620000
BEST3   1620000 perm   1467 sec   (1105 perm/sec)   p_kst 7.259259e-04   p_cons 9.511722e-01   p_joint 7.259259e-04

Joint ci ratio: 1.137851e-01	ci left: 6.861995e-04	ci right 7.695787e-04	k: 1185	n:1630000
Cons ci ratio: 6.957527e-04	ci left: 9.508281e-01	ci right 9.514905e-01	k: 1550391	n:1630000
KS ci ratio: 1.137851e-01	ci left: 6.861995e-04	ci right 7.695787e-04	k: 1185	n:1630000
BEST3   1630000 perm   1483 sec   (1099 perm/sec)   p_kst 7.269939e-04   p_cons 9.511601e-01   p_joint 7.269939e-04

Joint ci ratio: 1.133084e-01	ci left: 6.879397e-04	ci right 7.711568e-04	k: 1195	n:1640000
Cons ci ratio: 6.935263e-04	ci left: 9.508429e-01	ci right 9.515031e-01	k: 1559925	n:1640000
KS ci ratio: 1.133084e-01	ci left: 6.879397e-04	ci right 7.711568e-04	k: 1195	n:1640000
BEST3   1640000 perm   1499 sec   (1094 perm/sec)   p_kst 7.286585e-04   p_cons 9.511738e-01   p_joint 7.286585e-04

Joint ci ratio: 1.129782e-01	ci left: 6.878928e-04	ci right 7.708455e-04	k: 1202	n:1650000
Cons ci ratio: 6.912985e-04	ci left: 9.508604e-01	ci right 9.515186e-01	k: 1569464	n:1650000
KS ci ratio: 1.129782e-01	ci left: 6.878928e-04	ci right 7.708455e-04	k: 1202	n:1650000
BEST3   1650000 perm   1515 sec   (1089 perm/sec)   p_kst 7.284848e-04   p_cons 9.511903e-01   p_joint 7.284848e-04

Joint ci ratio: 1.126976e-01	ci left: 6.872613e-04	ci right 7.699183e-04	k: 1208	n:1660000
Cons ci ratio: 6.892842e-04	ci left: 9.508518e-01	ci right 9.515080e-01	k: 1578960	n:1660000
KS ci ratio: 1.126976e-01	ci left: 6.872613e-04	ci right 7.699183e-04	k: 1208	n:1660000
BEST3   1660000 perm   1531 sec   (1084 perm/sec)   p_kst 7.277108e-04   p_cons 9.511807e-01   p_joint 7.277108e-04

Joint ci ratio: 1.123727e-01	ci left: 6.872196e-04	ci right 7.696176e-04	k: 1215	n:1670000
Cons ci ratio: 6.872254e-04	ci left: 9.508517e-01	ci right 9.515060e-01	k: 1588470	n:1670000
KS ci ratio: 1.123727e-01	ci left: 6.872196e-04	ci right 7.696176e-04	k: 1215	n:1670000
BEST3   1670000 perm   1547 sec   (1080 perm/sec)   p_kst 7.275449e-04   p_cons 9.511796e-01   p_joint 7.275449e-04

Joint ci ratio: 1.120966e-01	ci left: 6.866001e-04	ci right 7.687082e-04	k: 1221	n:1680000
Cons ci ratio: 6.852112e-04	ci left: 9.508481e-01	ci right 9.515004e-01	k: 1597974	n:1680000
KS ci ratio: 1.120966e-01	ci left: 6.866001e-04	ci right 7.687082e-04	k: 1221	n:1680000
BEST3   1680000 perm   1563 sec   (1075 perm/sec)   p_kst 7.267857e-04   p_cons 9.511750e-01   p_joint 7.267857e-04

Joint ci ratio: 1.116406e-01	ci left: 6.882890e-04	ci right 7.702423e-04	k: 1231	n:1690000
Cons ci ratio: 6.832582e-04	ci left: 9.508385e-01	ci right 9.514890e-01	k: 1607468	n:1690000
KS ci ratio: 1.116406e-01	ci left: 6.882890e-04	ci right 7.702423e-04	k: 1231	n:1690000
BEST3   1690000 perm   1580 sec   (1070 perm/sec)   p_kst 7.284024e-04   p_cons 9.511645e-01   p_joint 7.284024e-04

Joint ci ratio: 1.112350e-01	ci left: 6.893869e-04	ci right 7.711530e-04	k: 1240	n:1700000
Cons ci ratio: 6.813002e-04	ci left: 9.508320e-01	ci right 9.514806e-01	k: 1616967	n:1700000
KS ci ratio: 1.112350e-01	ci left: 6.893869e-04	ci right 7.711530e-04	k: 1240	n:1700000
BEST3   1700000 perm   1596 sec   (1065 perm/sec)   p_kst 7.294118e-04   p_cons 9.511571e-01   p_joint 7.294118e-04

Joint ci ratio: 1.109226e-01	ci left: 6.893352e-04	ci right 7.708506e-04	k: 1247	n:1710000
Cons ci ratio: 6.790766e-04	ci left: 9.508643e-01	ci right 9.515108e-01	k: 1626532	n:1710000
KS ci ratio: 1.109226e-01	ci left: 6.893352e-04	ci right 7.708506e-04	k: 1247	n:1710000
BEST3   1710000 perm   1612 sec   (1061 perm/sec)   p_kst 7.292398e-04   p_cons 9.511883e-01   p_joint 7.292398e-04

Joint ci ratio: 1.107012e-01	ci left: 6.881538e-04	ci right 7.693565e-04	k: 1252	n:1720000
Cons ci ratio: 6.772391e-04	ci left: 9.508461e-01	ci right 9.514908e-01	k: 1636011	n:1720000
KS ci ratio: 1.107012e-01	ci left: 6.881538e-04	ci right 7.693565e-04	k: 1252	n:1720000
BEST3   1720000 perm   1629 sec   (1056 perm/sec)   p_kst 7.279070e-04   p_cons 9.511692e-01   p_joint 7.279070e-04

Joint ci ratio: 1.104371e-01	ci left: 6.875483e-04	ci right 7.684734e-04	k: 1258	n:1730000
Cons ci ratio: 6.751263e-04	ci left: 9.508680e-01	ci right 9.515108e-01	k: 1645559	n:1730000
KS ci ratio: 1.104371e-01	ci left: 6.875483e-04	ci right 7.684734e-04	k: 1258	n:1730000
BEST3   1730000 perm   1646 sec   (1051 perm/sec)   p_kst 7.271676e-04   p_cons 9.511902e-01   p_joint 7.271676e-04

Joint ci ratio: 1.100879e-01	ci left: 6.880678e-04	ci right 7.687813e-04	k: 1266	n:1740000
Cons ci ratio: 6.731539e-04	ci left: 9.508731e-01	ci right 9.515139e-01	k: 1655078	n:1740000
KS ci ratio: 1.100879e-01	ci left: 6.880678e-04	ci right 7.687813e-04	k: 1266	n:1740000
BEST3   1740000 perm   1663 sec   (1046 perm/sec)   p_kst 7.275862e-04   p_cons 9.511943e-01   p_joint 7.275862e-04

Joint ci ratio: 1.099579e-01	ci left: 6.858031e-04	ci right 7.661498e-04	k: 1269	n:1750000
Cons ci ratio: 6.713722e-04	ci left: 9.508540e-01	ci right 9.514931e-01	k: 1664555	n:1750000
KS ci ratio: 1.099579e-01	ci left: 6.858031e-04	ci right 7.661498e-04	k: 1269	n:1750000
BEST3   1750000 perm   1680 sec   (1042 perm/sec)   p_kst 7.251429e-04   p_cons 9.511743e-01   p_joint 7.251429e-04

Joint ci ratio: 1.093992e-01	ci left: 6.890903e-04	ci right 7.693855e-04	k: 1282	n:1760000
Cons ci ratio: 6.694242e-04	ci left: 9.508602e-01	ci right 9.514975e-01	k: 1674076	n:1760000
KS ci ratio: 1.093992e-01	ci left: 6.890903e-04	ci right 7.693855e-04	k: 1282	n:1760000
BEST3   1760000 perm   1697 sec   (1037 perm/sec)   p_kst 7.284091e-04   p_cons 9.511795e-01   p_joint 7.284091e-04

Joint ci ratio: 1.092292e-01	ci left: 6.873952e-04	ci right 7.673604e-04	k: 1286	n:1770000
Cons ci ratio: 6.676434e-04	ci left: 9.508453e-01	ci right 9.514809e-01	k: 1683560	n:1770000
KS ci ratio: 1.092292e-01	ci left: 6.873952e-04	ci right 7.673604e-04	k: 1286	n:1770000
BEST3   1770000 perm   1715 sec   (1032 perm/sec)   p_kst 7.265537e-04   p_cons 9.511638e-01   p_joint 7.265537e-04

Joint ci ratio: 1.089334e-01	ci left: 6.873587e-04	ci right 7.670892e-04	k: 1293	n:1780000
Cons ci ratio: 6.657759e-04	ci left: 9.508447e-01	ci right 9.514785e-01	k: 1693069	n:1780000
KS ci ratio: 1.089334e-01	ci left: 6.873587e-04	ci right 7.670892e-04	k: 1293	n:1780000
BEST3   1780000 perm   1731 sec   (1028 perm/sec)   p_kst 7.264045e-04   p_cons 9.511624e-01   p_joint 7.264045e-04

Joint ci ratio: 1.087655e-01	ci left: 6.856925e-04	ci right 7.650993e-04	k: 1297	n:1790000
Cons ci ratio: 6.636685e-04	ci left: 9.508800e-01	ci right 9.515118e-01	k: 1702642	n:1790000
KS ci ratio: 1.087655e-01	ci left: 6.856925e-04	ci right 7.650993e-04	k: 1297	n:1790000
BEST3   1790000 perm   1749 sec   (1023 perm/sec)   p_kst 7.245810e-04   p_cons 9.511966e-01   p_joint 7.245810e-04

Joint ci ratio: 1.086401e-01	ci left: 6.835044e-04	ci right 7.625607e-04	k: 1300	n:1800000
Cons ci ratio: 6.618064e-04	ci left: 9.508831e-01	ci right 9.515132e-01	k: 1712158	n:1800000
KS ci ratio: 1.086401e-01	ci left: 6.835044e-04	ci right 7.625607e-04	k: 1300	n:1800000
BEST3   1800000 perm   1766 sec   (1019 perm/sec)   p_kst 7.222222e-04   p_cons 9.511989e-01   p_joint 7.222222e-04

Joint ci ratio: 1.083076e-01	ci left: 6.840281e-04	ci right 7.628874e-04	k: 1308	n:1810000
Cons ci ratio: 6.600110e-04	ci left: 9.508790e-01	ci right 9.515074e-01	k: 1721661	n:1810000
KS ci ratio: 1.083076e-01	ci left: 6.840281e-04	ci right 7.628874e-04	k: 1308	n:1810000
BEST3   1810000 perm   1784 sec   (1015 perm/sec)   p_kst 7.226519e-04   p_cons 9.511939e-01   p_joint 7.226519e-04

Joint ci ratio: 1.081426e-01	ci left: 6.824080e-04	ci right 7.609531e-04	k: 1312	n:1820000
Cons ci ratio: 6.580392e-04	ci left: 9.509020e-01	ci right 9.515285e-01	k: 1731213	n:1820000
KS ci ratio: 1.081426e-01	ci left: 6.824080e-04	ci right 7.609531e-04	k: 1312	n:1820000
BEST3   1820000 perm   1801 sec   (1011 perm/sec)   p_kst 7.208791e-04   p_cons 9.512159e-01   p_joint 7.208791e-04

Joint ci ratio: 1.078964e-01	ci left: 6.818691e-04	ci right 7.601621e-04	k: 1318	n:1830000
Cons ci ratio: 6.561583e-04	ci left: 9.509143e-01	ci right 9.515390e-01	k: 1740746	n:1830000
KS ci ratio: 1.078964e-01	ci left: 6.818691e-04	ci right 7.601621e-04	k: 1318	n:1830000
BEST3   1830000 perm   1818 sec   (1006 perm/sec)   p_kst 7.202186e-04   p_cons 9.512273e-01   p_joint 7.202186e-04

Joint ci ratio: 1.075707e-01	ci left: 6.823939e-04	ci right 7.604957e-04	k: 1326	n:1840000
Cons ci ratio: 6.543968e-04	ci left: 9.509117e-01	ci right 9.515347e-01	k: 1750252	n:1840000
KS ci ratio: 1.075707e-01	ci left: 6.823939e-04	ci right 7.604957e-04	k: 1326	n:1840000
BEST3   1840000 perm   1836 sec   (1002 perm/sec)   p_kst 7.206522e-04   p_cons 9.512239e-01   p_joint 7.206522e-04

Joint ci ratio: 1.072077e-01	ci left: 6.834395e-04	ci right 7.613804e-04	k: 1335	n:1850000
Cons ci ratio: 6.525202e-04	ci left: 9.509276e-01	ci right 9.515488e-01	k: 1759792	n:1850000
KS ci ratio: 1.072077e-01	ci left: 6.834395e-04	ci right 7.613804e-04	k: 1335	n:1850000
BEST3   1850000 perm   1854 sec   (998 perm/sec)   p_kst 7.216216e-04   p_cons 9.512389e-01   p_joint 7.216216e-04

Joint ci ratio: 1.069279e-01	ci left: 6.834278e-04	ci right 7.611511e-04	k: 1342	n:1860000
Cons ci ratio: 6.507313e-04	ci left: 9.509331e-01	ci right 9.515526e-01	k: 1769313	n:1860000
KS ci ratio: 1.069279e-01	ci left: 6.834278e-04	ci right 7.611511e-04	k: 1342	n:1860000
BEST3   1860000 perm   1872 sec   (994 perm/sec)   p_kst 7.215054e-04   p_cons 9.512435e-01   p_joint 7.215054e-04

Joint ci ratio: 1.068485e-01	ci left: 6.808140e-04	ci right 7.581789e-04	k: 1344	n:1870000
Cons ci ratio: 6.488934e-04	ci left: 9.509476e-01	ci right 9.515654e-01	k: 1778851	n:1870000
KS ci ratio: 1.068485e-01	ci left: 6.808140e-04	ci right 7.581789e-04	k: 1344	n:1870000
BEST3   1870000 perm   1890 sec   (990 perm/sec)   p_kst 7.187166e-04   p_cons 9.512572e-01   p_joint 7.187166e-04

Joint ci ratio: 1.066505e-01	ci left: 6.797812e-04	ci right 7.568767e-04	k: 1349	n:1880000
Cons ci ratio: 6.472157e-04	ci left: 9.509412e-01	ci right 9.515574e-01	k: 1788350	n:1880000
KS ci ratio: 1.066505e-01	ci left: 6.797812e-04	ci right 7.568767e-04	k: 1349	n:1880000
BEST3   1880000 perm   1908 sec   (985 perm/sec)   p_kst 7.175532e-04   p_cons 9.512500e-01   p_joint 7.175532e-04

Joint ci ratio: 1.064930e-01	ci left: 6.782444e-04	ci right 7.550448e-04	k: 1353	n:1890000
Cons ci ratio: 6.454883e-04	ci left: 9.509439e-01	ci right 9.515584e-01	k: 1797866	n:1890000
KS ci ratio: 1.064930e-01	ci left: 6.782444e-04	ci right 7.550448e-04	k: 1353	n:1890000
BEST3   1890000 perm   1926 sec   (981 perm/sec)   p_kst 7.158730e-04   p_cons 9.512519e-01   p_joint 7.158730e-04

Joint ci ratio: 1.061797e-01	ci left: 6.787733e-04	ci right 7.553934e-04	k: 1361	n:1900000
Cons ci ratio: 6.439537e-04	ci left: 9.509207e-01	ci right 9.515337e-01	k: 1807333	n:1900000
KS ci ratio: 1.061797e-01	ci left: 6.787733e-04	ci right 7.553934e-04	k: 1361	n:1900000
BEST3   1900000 perm   1944 sec   (977 perm/sec)   p_kst 7.163158e-04   p_cons 9.512279e-01   p_joint 7.163158e-04

Joint ci ratio: 1.059467e-01	ci left: 6.782775e-04	ci right 7.546631e-04	k: 1367	n:1910000
Cons ci ratio: 6.423355e-04	ci left: 9.509114e-01	ci right 9.515229e-01	k: 1816826	n:1910000
KS ci ratio: 1.059467e-01	ci left: 6.782775e-04	ci right 7.546631e-04	k: 1367	n:1910000
BEST3   1910000 perm   1963 sec   (973 perm/sec)   p_kst 7.157068e-04   p_cons 9.512178e-01   p_joint 7.157068e-04

Joint ci ratio: 1.057151e-01	ci left: 6.777871e-04	ci right 7.539403e-04	k: 1373	n:1920000
Cons ci ratio: 6.406361e-04	ci left: 9.509157e-01	ci right 9.515256e-01	k: 1826345	n:1920000
KS ci ratio: 1.057151e-01	ci left: 6.777871e-04	ci right 7.539403e-04	k: 1373	n:1920000
BEST3   1920000 perm   1981 sec   (969 perm/sec)   p_kst 7.151042e-04   p_cons 9.512214e-01   p_joint 7.151042e-04

Joint ci ratio: 1.054087e-01	ci left: 6.783109e-04	ci right 7.542883e-04	k: 1381	n:1930000
Cons ci ratio: 6.389357e-04	ci left: 9.509221e-01	ci right 9.515304e-01	k: 1835868	n:1930000
KS ci ratio: 1.054087e-01	ci left: 6.783109e-04	ci right 7.542883e-04	k: 1381	n:1930000
BEST3   1930000 perm   2000 sec   (965 perm/sec)   p_kst 7.155440e-04   p_cons 9.512269e-01   p_joint 7.155440e-04

Joint ci ratio: 1.050671e-01	ci left: 6.793315e-04	ci right 7.551614e-04	k: 1390	n:1940000
Cons ci ratio: 6.372453e-04	ci left: 9.509290e-01	ci right 9.515357e-01	k: 1845392	n:1940000
KS ci ratio: 1.050671e-01	ci left: 6.793315e-04	ci right 7.551614e-04	k: 1390	n:1940000
BEST3   1940000 perm   2018 sec   (961 perm/sec)   p_kst 7.164948e-04   p_cons 9.512330e-01   p_joint 7.164948e-04

Joint ci ratio: 1.045794e-01	ci left: 6.823397e-04	ci right 7.581301e-04	k: 1403	n:1950000
Cons ci ratio: 6.355120e-04	ci left: 9.509440e-01	ci right 9.515490e-01	k: 1854932	n:1950000
KS ci ratio: 1.045794e-01	ci left: 6.823397e-04	ci right 7.581301e-04	k: 1403	n:1950000
BEST3   1950000 perm   2037 sec   (957 perm/sec)   p_kst 7.194872e-04   p_cons 9.512472e-01   p_joint 7.194872e-04

Joint ci ratio: 1.042827e-01	ci left: 6.828334e-04	ci right 7.584503e-04	k: 1411	n:1960000
Cons ci ratio: 6.339636e-04	ci left: 9.509338e-01	ci right 9.515373e-01	k: 1864423	n:1960000
KS ci ratio: 1.042827e-01	ci left: 6.828334e-04	ci right 7.584503e-04	k: 1411	n:1960000
BEST3   1960000 perm   2056 sec   (953 perm/sec)   p_kst 7.198980e-04   p_cons 9.512362e-01   p_joint 7.198980e-04

Joint ci ratio: 1.039153e-01	ci left: 6.843113e-04	ci right 7.598085e-04	k: 1421	n:1970000
Cons ci ratio: 6.322984e-04	ci left: 9.509425e-01	ci right 9.515445e-01	k: 1873951	n:1970000
KS ci ratio: 1.039153e-01	ci left: 6.843113e-04	ci right 7.598085e-04	k: 1421	n:1970000
BEST3   1970000 perm   2075 sec   (949 perm/sec)   p_kst 7.213198e-04   p_cons 9.512442e-01   p_joint 7.213198e-04

Joint ci ratio: 1.037695e-01	ci left: 6.828228e-04	ci right 7.580438e-04	k: 1425	n:1980000
Cons ci ratio: 6.306290e-04	ci left: 9.509537e-01	ci right 9.515541e-01	k: 1883484	n:1980000
KS ci ratio: 1.037695e-01	ci left: 6.828228e-04	ci right 7.580438e-04	k: 1425	n:1980000
BEST3   1980000 perm   2093 sec   (946 perm/sec)   p_kst 7.196970e-04   p_cons 9.512545e-01   p_joint 7.196970e-04

Joint ci ratio: 1.036606e-01	ci left: 6.808600e-04	ci right 7.557812e-04	k: 1428	n:1990000
Cons ci ratio: 6.290921e-04	ci left: 9.509471e-01	ci right 9.515460e-01	k: 1892982	n:1990000
KS ci ratio: 1.036606e-01	ci left: 6.808600e-04	ci right 7.557812e-04	k: 1428	n:1990000
BEST3   1990000 perm   2113 sec   (942 perm/sec)   p_kst 7.175879e-04   p_cons 9.512472e-01   p_joint 7.175879e-04

Joint ci ratio: 1.034437e-01	ci left: 6.803780e-04	ci right 7.550800e-04	k: 1434	n:2000000
Cons ci ratio: 6.275833e-04	ci left: 9.509381e-01	ci right 9.515356e-01	k: 1902475	n:2000000
KS ci ratio: 1.034437e-01	ci left: 6.803780e-04	ci right 7.550800e-04	k: 1434	n:2000000
BEST3   2000000 perm   2132 sec   (938 perm/sec)   p_kst 7.170000e-04   p_cons 9.512375e-01   p_joint 7.170000e-04

Joint ci ratio: 1.030851e-01	ci left: 6.818397e-04	ci right 7.564269e-04	k: 1444	n:2010000
Cons ci ratio: 6.261020e-04	ci left: 9.509267e-01	ci right 9.515227e-01	k: 1911963	n:2010000
KS ci ratio: 1.030851e-01	ci left: 6.818397e-04	ci right 7.564269e-04	k: 1444	n:2010000
BEST3   2010000 perm   2152 sec   (934 perm/sec)   p_kst 7.184080e-04   p_cons 9.512254e-01   p_joint 7.184080e-04

Joint ci ratio: 1.029784e-01	ci left: 6.799111e-04	ci right 7.542057e-04	k: 1447	n:2020000
Cons ci ratio: 6.244378e-04	ci left: 9.509442e-01	ci right 9.515387e-01	k: 1921509	n:2020000
KS ci ratio: 1.029784e-01	ci left: 6.799111e-04	ci right 7.542057e-04	k: 1447	n:2020000
BEST3   2020000 perm   2171 sec   (930 perm/sec)   p_kst 7.163366e-04   p_cons 9.512421e-01   p_joint 7.163366e-04

Joint ci ratio: 1.027303e-01	ci left: 6.799213e-04	ci right 7.540273e-04	k: 1454	n:2030000
Cons ci ratio: 6.228927e-04	ci left: 9.509457e-01	ci right 9.515387e-01	k: 1931023	n:2030000
KS ci ratio: 1.027303e-01	ci left: 6.799213e-04	ci right 7.540273e-04	k: 1454	n:2030000
BEST3   2030000 perm   2191 sec   (927 perm/sec)   p_kst 7.162562e-04   p_cons 9.512429e-01   p_joint 7.162562e-04

Joint ci ratio: 1.024140e-01	ci left: 6.808870e-04	ci right 7.548560e-04	k: 1463	n:2040000
Cons ci ratio: 6.212276e-04	ci left: 9.509669e-01	ci right 9.515583e-01	k: 1940577	n:2040000
KS ci ratio: 1.024140e-01	ci left: 6.808870e-04	ci right 7.548560e-04	k: 1463	n:2040000
BEST3   2040000 perm   2210 sec   (923 perm/sec)   p_kst 7.171569e-04   p_cons 9.512632e-01   p_joint 7.171569e-04

Joint ci ratio: 1.021701e-01	ci left: 6.808929e-04	ci right 7.546757e-04	k: 1470	n:2050000
Cons ci ratio: 6.196376e-04	ci left: 9.509785e-01	ci right 9.515685e-01	k: 1950112	n:2050000
KS ci ratio: 1.021701e-01	ci left: 6.808929e-04	ci right 7.546757e-04	k: 1470	n:2050000
BEST3   2050000 perm   2230 sec   (919 perm/sec)   p_kst 7.170732e-04   p_cons 9.512741e-01   p_joint 7.170732e-04

Joint ci ratio: 1.018934e-01	ci left: 6.813720e-04	ci right 7.549948e-04	k: 1478	n:2060000
Cons ci ratio: 6.181536e-04	ci left: 9.509760e-01	ci right 9.515645e-01	k: 1959618	n:2060000
KS ci ratio: 1.018934e-01	ci left: 6.813720e-04	ci right 7.549948e-04	k: 1478	n:2060000
BEST3   2060000 perm   2249 sec   (916 perm/sec)   p_kst 7.174757e-04   p_cons 9.512709e-01   p_joint 7.174757e-04

Joint ci ratio: 1.017903e-01	ci left: 6.794926e-04	ci right 7.528337e-04	k: 1481	n:2070000
Cons ci ratio: 6.166641e-04	ci left: 9.509759e-01	ci right 9.515630e-01	k: 1969129	n:2070000
KS ci ratio: 1.017903e-01	ci left: 6.794926e-04	ci right 7.528337e-04	k: 1481	n:2070000
BEST3   2070000 perm   2269 sec   (912 perm/sec)   p_kst 7.154589e-04   p_cons 9.512700e-01   p_joint 7.154589e-04

Joint ci ratio: 1.016191e-01	ci left: 6.785685e-04	ci right 7.516793e-04	k: 1486	n:2080000
Cons ci ratio: 6.152652e-04	ci left: 9.509637e-01	ci right 9.515495e-01	k: 1978615	n:2080000
KS ci ratio: 1.016191e-01	ci left: 6.785685e-04	ci right 7.516793e-04	k: 1486	n:2080000
BEST3   2080000 perm   2289 sec   (909 perm/sec)   p_kst 7.144231e-04   p_cons 9.512572e-01   p_joint 7.144231e-04

Joint ci ratio: 1.013468e-01	ci left: 6.790524e-04	ci right 7.520076e-04	k: 1494	n:2090000
Cons ci ratio: 6.139294e-04	ci left: 9.509435e-01	ci right 9.515280e-01	k: 1988084	n:2090000
KS ci ratio: 1.013468e-01	ci left: 6.790524e-04	ci right 7.520076e-04	k: 1494	n:2090000
BEST3   2090000 perm   2309 sec   (905 perm/sec)   p_kst 7.148325e-04   p_cons 9.512364e-01   p_joint 7.148325e-04

Joint ci ratio: 1.011104e-01	ci left: 6.790678e-04	ci right 7.518443e-04	k: 1501	n:2100000
Cons ci ratio: 6.124419e-04	ci left: 9.509479e-01	ci right 9.515309e-01	k: 1997604	n:2100000
KS ci ratio: 1.011104e-01	ci left: 6.790678e-04	ci right 7.518443e-04	k: 1501	n:2100000
BEST3   2100000 perm   2329 sec   (902 perm/sec)   p_kst 7.147619e-04   p_cons 9.512400e-01   p_joint 7.147619e-04

Joint ci ratio: 1.008756e-01	ci left: 6.790832e-04	ci right 7.516824e-04	k: 1508	n:2110000
Cons ci ratio: 6.109777e-04	ci left: 9.509503e-01	ci right 9.515319e-01	k: 2007120	n:2110000
KS ci ratio: 1.008756e-01	ci left: 6.790832e-04	ci right 7.516824e-04	k: 1508	n:2110000
BEST3   2110000 perm   2349 sec   (898 perm/sec)   p_kst 7.146919e-04   p_cons 9.512417e-01   p_joint 7.146919e-04

Joint ci ratio: 1.006424e-01	ci left: 6.790986e-04	ci right 7.515218e-04	k: 1515	n:2120000
Cons ci ratio: 6.095828e-04	ci left: 9.509437e-01	ci right 9.515240e-01	k: 2016617	n:2120000
KS ci ratio: 1.006424e-01	ci left: 6.790986e-04	ci right 7.515218e-04	k: 1515	n:2120000
BEST3   2120000 perm   2368 sec   (895 perm/sec)   p_kst 7.146226e-04   p_cons 9.512344e-01   p_joint 7.146226e-04

Joint ci ratio: 1.004109e-01	ci left: 6.791141e-04	ci right 7.513625e-04	k: 1522	n:2130000
Cons ci ratio: 6.081235e-04	ci left: 9.509484e-01	ci right 9.515273e-01	k: 2026138	n:2130000
KS ci ratio: 1.004109e-01	ci left: 6.791141e-04	ci right 7.513625e-04	k: 1522	n:2130000
BEST3   2130000 perm   2389 sec   (892 perm/sec)   p_kst 7.145540e-04   p_cons 9.512385e-01   p_joint 7.145540e-04

Joint ci ratio: 1.002137e-01	ci left: 6.786741e-04	ci right 7.507255e-04	k: 1528	n:2140000
Cons ci ratio: 6.067205e-04	ci left: 9.509461e-01	ci right 9.515237e-01	k: 2035644	n:2140000
KS ci ratio: 1.002137e-01	ci left: 6.786741e-04	ci right 7.507255e-04	k: 1528	n:2140000
BEST3   2140000 perm   2409 sec   (888 perm/sec)   p_kst 7.140187e-04   p_cons 9.512355e-01   p_joint 7.140187e-04

Joint ci ratio: 1.000177e-01	ci left: 6.782383e-04	ci right 7.500943e-04	k: 1534	n:2150000
Cons ci ratio: 6.053150e-04	ci left: 9.509457e-01	ci right 9.515219e-01	k: 2045154	n:2150000
KS ci ratio: 1.000177e-01	ci left: 6.782383e-04	ci right 7.500943e-04	k: 1534	n:2150000
BEST3   2150000 perm   2429 sec   (885 perm/sec)   p_kst 7.134884e-04   p_cons 9.512344e-01   p_joint 7.134884e-04

Joint ci ratio: 9.956449e-02	ci left: 6.814181e-04	ci right 7.532648e-04	k: 1548	n:2160000
Cons ci ratio: 6.039915e-04	ci left: 9.509341e-01	ci right 9.515091e-01	k: 2054640	n:2160000
KS ci ratio: 9.956449e-02	ci left: 6.814181e-04	ci right 7.532648e-04	k: 1548	n:2160000
BEST3   2160000 perm   2450 sec   (882 perm/sec)   p_kst 7.166667e-04   p_cons 9.512222e-01   p_joint 7.166667e-04

Outputting figure to mutsig2_images.part000000000016/BEST3.3_2043_2160000_0.00071667_0.95122_0.00071667.png
                gene_name: BEST3
               theta_stop: 0.100 
                    nperm: 2160000 
                     p_ks: 0.00072 
        ci_ks_bounds_left: 0.00068 
       ci_ks_bounds_right: 0.00075 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.00072 
     ci_joint_bounds_left: 0.00068 
    ci_joint_bounds_right: 0.00075 

Current progress: 38 percent done.
BFSP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.105409e-01	ci left: 1.054923e-01	ci right 1.179349e-01	k: 1116	n:10000
Cons ci ratio: 4.964965e-02	ci left: 3.743530e-01	ci right 3.935147e-01	k: 3839	n:10000
KS ci ratio: 1.996961e-01	ci left: 3.338573e-02	ci right 4.088702e-02	k: 370	n:10000
BFSP1   10000 perm   2 sec   (6233 perm/sec)   p_kst 3.700000e-02   p_cons 3.839000e-01   p_joint 1.116000e-01

Joint ci ratio: 7.300184e-02	ci left: 1.213813e-01	ci right 1.306278e-01	k: 2519	n:20000
Cons ci ratio: 3.532355e-02	ci left: 3.743121e-01	ci right 3.878225e-01	k: 7621	n:20000
KS ci ratio: 1.398453e-01	ci left: 3.515098e-02	ci right 4.048447e-02	k: 755	n:20000
BFSP1   20000 perm   4 sec   (5489 perm/sec)   p_kst 3.775000e-02   p_cons 3.810500e-01   p_joint 1.259500e-01

Joint ci ratio: 7.614633e-02	ci left: 7.806765e-02	ci right 8.428041e-02	k: 2434	n:30000
Cons ci ratio: 2.871758e-02	ci left: 3.775938e-01	ci right 3.886289e-01	k: 11493	n:30000
KS ci ratio: 1.152982e-01	ci left: 3.495708e-02	ci right 3.926649e-02	k: 1112	n:30000
BFSP1   30000 perm   6 sec   (5187 perm/sec)   p_kst 3.706667e-02   p_cons 3.831000e-01   p_joint 8.113333e-02

Joint ci ratio: 5.813952e-02	ci left: 9.907524e-02	ci right 1.050327e-01	k: 4081	n:40000
Cons ci ratio: 2.496951e-02	ci left: 3.764616e-01	ci right 3.860056e-01	k: 15249	n:40000
KS ci ratio: 9.953848e-02	ci left: 3.546413e-02	ci right 3.920343e-02	k: 1492	n:40000
BFSP1   40000 perm   8 sec   (5006 perm/sec)   p_kst 3.730000e-02   p_cons 3.812250e-01   p_joint 1.020250e-01

Outputting figure to mutsig2_images.part000000000016/BFSP1.3_2036_40000_0.0373_0.38122_0.10203.png
                gene_name: BFSP1
               theta_stop: 0.100 
                    nperm: 40000 
                     p_ks: 0.037 
        ci_ks_bounds_left: 0.035 
       ci_ks_bounds_right: 0.039 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.099 
    ci_joint_bounds_right: 0.11 

Current progress: 41 percent done.
BICC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.818666e-02	ci left: 8.152741e-01	ci right 8.303374e-01	k: 8229	n:10000
KS ci ratio: 2.319896e-02	ci left: 7.318901e-01	ci right 7.491696e-01	k: 7406	n:10000
BICC1   10000 perm   2 sec   (5303 perm/sec)   p_kst 7.406000e-01   p_cons 8.229000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000016/BICC1.3_3009_10000_0.7406_0.8229_1.png
                gene_name: BICC1
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 44 percent done.
BIRC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.786312e-02	ci left: 1.942671e-01	ci right 2.101068e-01	k: 2021	n:10000
Cons ci ratio: 1.528606e-01	ci left: 5.696592e-02	ci right 6.649137e-02	k: 616	n:10000
KS ci ratio: 7.306490e-02	ci left: 2.152677e-01	ci right 2.316936e-01	k: 2234	n:10000
BIRC3   10000 perm   2 sec   (6006 perm/sec)   p_kst 2.234000e-01   p_cons 6.160000e-02   p_joint 2.021000e-01

Joint ci ratio: 1.114503e-01	ci left: 5.499471e-02	ci right 6.153445e-02	k: 1164	n:20000
Cons ci ratio: 1.078584e-01	ci left: 5.859920e-02	ci right 6.532884e-02	k: 1238	n:20000
KS ci ratio: 5.151684e-02	ci left: 2.186831e-01	ci right 2.302971e-01	k: 4489	n:20000
BIRC3   20000 perm   4 sec   (5267 perm/sec)   p_kst 2.244500e-01   p_cons 6.190000e-02   p_joint 5.820000e-02

Joint ci ratio: 8.735481e-02	ci left: 6.014581e-02	ci right 6.567254e-02	k: 1886	n:30000
Cons ci ratio: 8.887230e-02	ci left: 5.818716e-02	ci right 6.363159e-02	k: 1826	n:30000
KS ci ratio: 4.221302e-02	ci left: 2.185316e-01	ci right 2.279888e-01	k: 6697	n:30000
BIRC3   30000 perm   6 sec   (4959 perm/sec)   p_kst 2.232333e-01   p_cons 6.086667e-02   p_joint 6.286667e-02

Outputting figure to mutsig2_images.part000000000016/BIRC3.3_1847_30000_0.22323_0.060867_0.062867.png
                gene_name: BIRC3
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.061 
      ci_cons_bounds_left: 0.058 
     ci_cons_bounds_right: 0.064 
                  p_joint: 0.063 
     ci_joint_bounds_left: 0.060 
    ci_joint_bounds_right: 0.066 

Current progress: 46 percent done.
BIRC7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.562438e-02	ci left: 6.915160e-01	ci right 7.095671e-01	k: 7006	n:10000
Cons ci ratio: 3.418225e-02	ci left: 5.582226e-01	ci right 5.777378e-01	k: 5680	n:10000
KS ci ratio: 3.058833e-02	ci left: 6.119096e-01	ci right 6.310196e-01	k: 6215	n:10000
BIRC7   10000 perm   2 sec   (6581 perm/sec)   p_kst 6.215000e-01   p_cons 5.680000e-01   p_joint 7.006000e-01

Outputting figure to mutsig2_images.part000000000016/BIRC7.3_921_10000_0.6215_0.568_0.7006.png
                gene_name: BIRC7
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 49 percent done.
BLK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.880121e-02	ci left: 8.052171e-01	ci right 8.206001e-01	k: 8130	n:10000
KS ci ratio: 1.251928e-02	ci left: 9.016521e-01	ci right 9.131093e-01	k: 9075	n:10000
BLK   10000 perm   2 sec   (5860 perm/sec)   p_kst 9.075000e-01   p_cons 8.130000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000016/BLK.3_1566_10000_0.9075_0.813_1.png
                gene_name: BLK
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 51 percent done.
BMP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.019312e-02	ci left: 6.180386e-01	ci right 6.370870e-01	k: 6276	n:10000
KS ci ratio: 2.453543e-02	ci left: 7.095727e-01	ci right 7.272999e-01	k: 7185	n:10000
BMP3   10000 perm   2 sec   (5802 perm/sec)   p_kst 7.185000e-01   p_cons 6.276000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000016/BMP3.3_1431_10000_0.7185_0.6276_1.png
                gene_name: BMP3
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 54 percent done.
BCMO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.595002e-02	ci left: 5.332753e-01	ci right 5.528996e-01	k: 5431	n:10000
Cons ci ratio: 3.818818e-02	ci left: 5.031509e-01	ci right 5.228415e-01	k: 5130	n:10000
KS ci ratio: 3.886633e-02	ci left: 4.943505e-01	ci right 5.140471e-01	k: 5042	n:10000
BCMO1   10000 perm   2 sec   (6242 perm/sec)   p_kst 5.042000e-01   p_cons 5.130000e-01   p_joint 5.431000e-01

Outputting figure to mutsig2_images.part000000000016/BCMO1.2_1688_10000_0.5042_0.513_0.5431.png
                gene_name: BCMO1
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 56 percent done.
BCR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.840456e-02	ci left: 8.117176e-01	ci right 8.268959e-01	k: 8194	n:10000
KS ci ratio: 1.497436e-02	ci left: 8.660086e-01	ci right 8.791735e-01	k: 8727	n:10000
BCR   10000 perm   2 sec   (5040 perm/sec)   p_kst 8.727000e-01   p_cons 8.194000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000016/BCR.2_3908_10000_0.8727_0.8194_1.png
                gene_name: BCR
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 59 percent done.
BDKRB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.817083e-02	ci left: 6.500161e-01	ci right 6.686910e-01	k: 6594	n:10000
Cons ci ratio: 4.464907e-02	ci left: 4.254529e-01	ci right 4.449849e-01	k: 4352	n:10000
KS ci ratio: 1.183680e-02	ci left: 9.109059e-01	ci right 9.218501e-01	k: 9165	n:10000
BDKRB1   10000 perm   2 sec   (6620 perm/sec)   p_kst 9.165000e-01   p_cons 4.352000e-01   p_joint 6.594000e-01

Outputting figure to mutsig2_images.part000000000016/BDKRB1.2_1066_10000_0.9165_0.4352_0.6594.png
                gene_name: BDKRB1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 62 percent done.
BECN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.431475e-02	ci left: 5.563181e-01	ci right 5.758434e-01	k: 5661	n:10000
KS ci ratio: 6.163475e-02	ci left: 2.790384e-01	ci right 2.968853e-01	k: 2879	n:10000
BECN1   10000 perm   1 sec   (6713 perm/sec)   p_kst 2.879000e-01   p_cons 5.661000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000016/BECN1.2_1397_10000_0.2879_0.5661_1.png
                gene_name: BECN1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 64 percent done.
BEST1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.196701e-02	ci left: 2.768594e-01	ci right 2.946656e-01	k: 2857	n:10000
Cons ci ratio: 1.894940e-02	ci left: 8.027803e-01	ci right 8.182384e-01	k: 8106	n:10000
KS ci ratio: 1.236641e-01	ci left: 8.562704e-02	ci right 9.701233e-02	k: 912	n:10000
BEST1   10000 perm   2 sec   (5961 perm/sec)   p_kst 9.120000e-02   p_cons 8.106000e-01   p_joint 2.857000e-01

Joint ci ratio: 1.305531e-02	ci left: 8.130366e-01	ci right 8.237707e-01	k: 16369	n:20000
Cons ci ratio: 1.421593e-02	ci left: 7.860552e-01	ci right 7.973598e-01	k: 15835	n:20000
KS ci ratio: 8.741912e-02	ci left: 8.734272e-02	ci right 9.537654e-02	k: 1826	n:20000
BEST1   20000 perm   4 sec   (5257 perm/sec)   p_kst 9.130000e-02   p_cons 7.917500e-01   p_joint 8.184500e-01

Outputting figure to mutsig2_images.part000000000016/BEST1.2_2054_20000_0.0913_0.79175_0.81845.png
                gene_name: BEST1
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.091 
        ci_ks_bounds_left: 0.087 
       ci_ks_bounds_right: 0.095 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 67 percent done.
BEST4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.544131e-02	ci left: 6.945411e-01	ci right 7.125402e-01	k: 7036	n:10000
KS ci ratio: 2.634093e-02	ci left: 6.797224e-01	ci right 6.979674e-01	k: 6889	n:10000
BEST4   10000 perm   1 sec   (6781 perm/sec)   p_kst 6.889000e-01   p_cons 7.036000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000016/BEST4.2_1458_10000_0.6889_0.7036_1.png
                gene_name: BEST4
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 69 percent done.
BEX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.402670e-02	ci left: 7.180521e-01	ci right 7.356156e-01	k: 7269	n:10000
KS ci ratio: 1.234719e-02	ci left: 9.040153e-01	ci right 9.153447e-01	k: 9098	n:10000
BEX1   10000 perm   1 sec   (7304 perm/sec)   p_kst 9.098000e-01   p_cons 7.269000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000016/BEX1.2_382_10000_0.9098_0.7269_1.png
                gene_name: BEX1
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
BHLHB9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.717997e-02	ci left: 8.315462e-01	ci right 8.460558e-01	k: 8389	n:10000
KS ci ratio: 1.808679e-02	ci left: 8.169002e-01	ci right 8.319103e-01	k: 8245	n:10000
BHLHB9   10000 perm   2 sec   (6237 perm/sec)   p_kst 8.245000e-01   p_cons 8.389000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000016/BHLHB9.2_1648_10000_0.8245_0.8389_1.png
                gene_name: BHLHB9
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 74 percent done.
BHLHE41
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.192571e-02	ci left: 7.532242e-01	ci right 7.700231e-01	k: 7617	n:10000
Cons ci ratio: 2.731636e-02	ci left: 6.638068e-01	ci right 6.822923e-01	k: 6731	n:10000
KS ci ratio: 6.208866e-02	ci left: 2.760670e-01	ci right 2.938584e-01	k: 2849	n:10000
BHLHE41   10000 perm   2 sec   (6464 perm/sec)   p_kst 2.849000e-01   p_cons 6.731000e-01   p_joint 7.617000e-01

Outputting figure to mutsig2_images.part000000000016/BHLHE41.2_1469_10000_0.2849_0.6731_0.7617.png
                gene_name: BHLHE41
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 77 percent done.
BHMT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.131878e-03	ci left: 9.440897e-01	ci right 9.528467e-01	k: 9486	n:10000
Cons ci ratio: 7.577795e-02	ci left: 2.030380e-01	ci right 2.191306e-01	k: 2110	n:10000
KS ci ratio: 2.010159e-02	ci left: 7.837077e-01	ci right 7.997220e-01	k: 7918	n:10000
BHMT   10000 perm   2 sec   (6574 perm/sec)   p_kst 7.918000e-01   p_cons 2.110000e-01   p_joint 9.486000e-01

Outputting figure to mutsig2_images.part000000000016/BHMT.2_1253_10000_0.7918_0.211_0.9486.png
                gene_name: BHMT
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 79 percent done.
BICD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.397226e-02	ci left: 7.189609e-01	ci right 7.365063e-01	k: 7278	n:10000
KS ci ratio: 2.043634e-02	ci left: 7.781330e-01	ci right 7.943000e-01	k: 7863	n:10000
BICD2   10000 perm   2 sec   (5733 perm/sec)   p_kst 7.863000e-01   p_cons 7.278000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000016/BICD2.2_2606_10000_0.7863_0.7278_1.png
                gene_name: BICD2
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
BIN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.385608e-02	ci left: 5.629343e-01	ci right 5.824233e-01	k: 5727	n:10000
Cons ci ratio: 5.677757e-02	ci left: 3.135397e-01	ci right 3.319637e-01	k: 3227	n:10000
KS ci ratio: 2.246886e-02	ci left: 7.441210e-01	ci right 7.611316e-01	k: 7527	n:10000
BIN2   10000 perm   2 sec   (6485 perm/sec)   p_kst 7.527000e-01   p_cons 3.227000e-01   p_joint 5.727000e-01

Outputting figure to mutsig2_images.part000000000016/BIN2.2_1750_10000_0.7527_0.3227_0.5727.png
                gene_name: BIN2
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 85 percent done.
BIRC8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.254263e-02	ci left: 2.177347e-01	ci right 2.342252e-01	k: 2259	n:10000
KS ci ratio: 5.138321e-03	ci left: 9.804856e-01	ci right 9.856275e-01	k: 9832	n:10000
BIRC8   10000 perm   1 sec   (6935 perm/sec)   p_kst 9.832000e-01   p_cons 2.259000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000016/BIRC8.2_715_10000_0.9832_0.2259_1.png
                gene_name: BIRC8
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
BLID
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.738916e-02	ci left: 8.281881e-01	ci right 8.428159e-01	k: 8356	n:10000
KS ci ratio: 3.181024e-02	ci left: 5.932311e-01	ci right 6.125089e-01	k: 6029	n:10000
BLID   10000 perm   1 sec   (7228 perm/sec)   p_kst 6.029000e-01   p_cons 8.356000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000016/BLID.2_331_10000_0.6029_0.8356_1.png
                gene_name: BLID
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
BLM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.372437e-02	ci left: 7.231012e-01	ci right 7.405635e-01	k: 7319	n:10000
KS ci ratio: 2.555722e-02	ci left: 6.926251e-01	ci right 7.106573e-01	k: 7017	n:10000
BLM   10000 perm   2 sec   (4782 perm/sec)   p_kst 7.017000e-01   p_cons 7.319000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000016/BLM.2_4338_10000_0.7017_0.7319_1.png
                gene_name: BLM
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
BLVRA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.895760e-03	ci left: 9.466899e-01	ci right 9.552449e-01	k: 9511	n:10000
Cons ci ratio: 1.414779e-02	ci left: 8.783802e-01	ci right 8.909947e-01	k: 8848	n:10000
KS ci ratio: 3.220355e-02	ci left: 5.873093e-01	ci right 6.066342e-01	k: 5970	n:10000
BLVRA   10000 perm   1 sec   (6721 perm/sec)   p_kst 5.970000e-01   p_cons 8.848000e-01   p_joint 9.511000e-01

Outputting figure to mutsig2_images.part000000000016/BLVRA.2_919_10000_0.597_0.8848_0.9511.png
                gene_name: BLVRA
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 95 percent done.
BMP15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.969831e-02	ci left: 2.318535e-01	ci right 2.486980e-01	k: 2402	n:10000
Cons ci ratio: 7.064666e-02	ci left: 2.270141e-01	ci right 2.437403e-01	k: 2353	n:10000
KS ci ratio: 5.602013e-02	ci left: 3.193950e-01	ci right 3.379049e-01	k: 3286	n:10000
BMP15   10000 perm   2 sec   (6661 perm/sec)   p_kst 3.286000e-01   p_cons 2.353000e-01   p_joint 2.402000e-01

Outputting figure to mutsig2_images.part000000000016/BMP15.2_1187_10000_0.3286_0.2353_0.2402.png
                gene_name: BMP15
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 97 percent done.
BMP2K
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.742198e-03	ci left: 9.371348e-01	ci right 9.464058e-01	k: 9419	n:10000
Cons ci ratio: 9.659224e-02	ci left: 1.345280e-01	ci right 1.482816e-01	k: 1413	n:10000
KS ci ratio: 1.608669e-02	ci left: 8.488632e-01	ci right 8.627288e-01	k: 8559	n:10000
BMP2K   10000 perm   2 sec   (5417 perm/sec)   p_kst 8.559000e-01   p_cons 1.413000e-01   p_joint 9.419000e-01

Outputting figure to mutsig2_images.part000000000016/BMP2K.2_3588_10000_0.8559_0.1413_0.9419.png
                gene_name: BMP2K
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000016
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 16 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1558>
Subject: Job 8003881: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1558>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000017> was used as the working directory.
Started at Sun Nov 11 15:03:53 2012
Results reported at Sun Nov 11 15:23:32 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000017.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000017.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 17  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000017.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1418.45 sec.
    Max Memory :      4746 MB
    Max Swap   :      7145 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
17
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 17
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 17: processing genes 1449 - 1538
Calculating significance of each gene.
Using projection method.
1449	BMP6	1
1450	BMP7	1
1451	BMP8A	1
1452	BMP8B	1
1453	BMPER	1
1454	BMPR1A	2.492884e-01
1455	BMPR1B	8.342775e-01
1456	BMPR2	9.689435e-01
1457	BMS1	9.837868e-01
1458	BMX	7.575897e-01
1459	BNC1	3.834120e-01
1460	BNC2	7.775108e-01
1461	BNIP1	3.566576e-01
1462	BNIP2	1
1463	BNIP3	1
1464	BNIP3L	1
1465	BNIPL	7.757900e-01
1466	BOC	9.590372e-01
1467	BOD1	1
1468	BOD1L	9.999678e-01
1469	BOK	1
1470	BOLA1	1
1471	BOLA3	7.111297e-02
1472	BOLL	3.833204e-01
1473	BPGM	4.222856e-01
1474	BPHL	1.556426e-01
1475	BPI	2.942554e-01
1476	BPIL1	1.918474e-01
1477	BPIL2	2.905930e-02
1478	BPIL3	4.919026e-01
1479	BPNT1	5.819477e-01
1480	BPTF	8.007740e-01
1481	BRAF	3.905584e-01
1482	BRAP	8.730187e-01
1483	BRCA1	3.175737e-01
1484	BRCA2	9.993487e-01
1485	BRCC3	2.618885e-01
1486	BRD1	9.739246e-01
1487	BRD2	1
1488	BRD3	9.164487e-01
1489	BRD4	1
1490	BRD7	8.024714e-01
1491	BRD8	9.970715e-01
1492	BRD9	6.278456e-01
1493	BRDT	1
1494	BRE	6.611532e-01
1495	BRF1	8.329881e-01
1496	BRF2	8.464259e-01
1497	BRI3	1
1498	BRI3BP	2.219622e-02
1499	BRIP1	7.441398e-01
1500	BRIX1	1
1501	BRMS1	7.596132e-01
1502	BRMS1L	1
1503	BRP44	1
1504	BRP44L	2.256869e-01
1505	BRPF1	1
1506	BRPF3	5.784878e-01
1507	BRS3	1
1508	BRSK1	1.395729e-01
1509	BRSK2	6.776004e-01
1510	BRWD1	8.174085e-01
1511	BRWD3	3.004703e-01
1512	BSCL2	6.850928e-01
1513	BSDC1	4.461629e-01
1514	BSG	1
1515	BSN	9.999999e-01
1516	BSND	1
1517	BSPRY	1
1518	BST1	5.401129e-01
1519	BST2	5.812679e-01
1520	BSX	1.841334e-01
1521	BTAF1	9.991649e-01
1522	BTBD1	1
1523	BTBD10	1
1524	BTBD11	1
1525	BTBD12	3.652050e-01
1526	BTBD16	7.348500e-01
1527	BTBD17	2.581520e-01
1528	BTBD2	1
1529	BTBD3	1.677815e-01
1530	BTBD6	5.281994e-01
1531	BTBD7	9.767011e-01
1532	BTBD8	1.036341e-01
1533	BTBD9	9.178178e-01
1534	BTC	4.455796e-01
1535	BTD	6.033998e-01
1536	BTF3	1
1537	BTF3L4	1
1538	BTG1	2.203534e-01
Done

Running MutSig 2:
Scatter job 17: processing genes 1449 - 1538
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
BRWD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.161134e-02	ci left: 5.962428e-01	ci right 6.154955e-01	k: 6059	n:10000
Cons ci ratio: 8.477335e-03	ci left: 9.511695e-01	ci right 9.593627e-01	k: 9554	n:10000
KS ci ratio: 3.783063e-02	ci left: 5.078524e-01	ci right 5.275373e-01	k: 5177	n:10000
BRWD3   10000 perm   3 sec   (3223 perm/sec)   p_kst 5.177000e-01   p_cons 9.554000e-01   p_joint 6.059000e-01

Outputting figure to mutsig2_images.part000000000017/BRWD3.15_5573_10000_0.5177_0.9554_0.6059.png
                gene_name: BRWD3
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 2 percent done.
BPTF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.027723e-01	ci left: 1.204354e-01	ci right 1.335827e-01	k: 1269	n:10000
Cons ci ratio: 1.281968e-01	ci left: 7.999369e-02	ci right 9.104916e-02	k: 854	n:10000
KS ci ratio: 6.584068e-02	ci left: 2.530063e-01	ci right 2.703328e-01	k: 2616	n:10000
BPTF   10000 perm   4 sec   (2844 perm/sec)   p_kst 2.616000e-01   p_cons 8.540000e-02   p_joint 1.269000e-01

Joint ci ratio: 8.931503e-02	ci left: 8.391296e-02	ci right 9.180734e-02	k: 1756	n:20000
Cons ci ratio: 8.892717e-02	ci left: 8.459877e-02	ci right 9.252133e-02	k: 1770	n:20000
KS ci ratio: 4.742157e-02	ci left: 2.485735e-01	ci right 2.606979e-01	k: 5092	n:20000
BPTF   20000 perm   8 sec   (2649 perm/sec)   p_kst 2.546000e-01   p_cons 8.850000e-02   p_joint 8.780000e-02

Outputting figure to mutsig2_images.part000000000017/BPTF.13_9261_20000_0.2546_0.0885_0.0878.png
                gene_name: BPTF
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.088 
      ci_cons_bounds_left: 0.085 
     ci_cons_bounds_right: 0.093 
                  p_joint: 0.088 
     ci_joint_bounds_left: 0.084 
    ci_joint_bounds_right: 0.092 

Current progress: 4 percent done.
BRCA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.918727e-02	ci left: 2.957857e-01	ci right 3.139281e-01	k: 3048	n:10000
Cons ci ratio: 1.149320e-01	ci left: 9.818038e-02	ci right 1.102513e-01	k: 1041	n:10000
KS ci ratio: 3.290415e-02	ci left: 5.768742e-01	ci right 5.962753e-01	k: 5866	n:10000
BRCA1   10000 perm   3 sec   (3397 perm/sec)   p_kst 5.866000e-01   p_cons 1.041000e-01   p_joint 3.048000e-01

Joint ci ratio: 4.888302e-02	ci left: 2.373165e-01	ci right 2.492582e-01	k: 4865	n:20000
Cons ci ratio: 8.179755e-02	ci left: 9.877126e-02	ci right 1.072446e-01	k: 2059	n:20000
KS ci ratio: 2.353532e-02	ci left: 5.741758e-01	ci right 5.879007e-01	k: 11621	n:20000
BRCA1   20000 perm   7 sec   (3057 perm/sec)   p_kst 5.810500e-01   p_cons 1.029500e-01   p_joint 2.432500e-01

Outputting figure to mutsig2_images.part000000000017/BRCA1.12_5750_20000_0.58105_0.10295_0.24325.png
                gene_name: BRCA1
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.099 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 7 percent done.
BRCA2
Processing conservation and coverage...
96% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.177074e-01	ci left: 2.797424e-02	ci right 3.490226e-02	k: 313	n:10000
Cons ci ratio: 3.198132e-01	ci left: 1.243336e-02	ci right 1.725533e-02	k: 147	n:10000
KS ci ratio: 5.002953e-02	ci left: 3.707712e-01	ci right 3.898986e-01	k: 3803	n:10000
BRCA2   10000 perm   4 sec   (2646 perm/sec)   p_kst 3.803000e-01   p_cons 1.470000e-02   p_joint 3.130000e-02

Joint ci ratio: 1.439520e-01	ci left: 3.317126e-02	ci right 3.836483e-02	k: 714	n:20000
Cons ci ratio: 2.187629e-01	ci left: 1.407013e-02	ci right 1.757269e-02	k: 315	n:20000
KS ci ratio: 3.603411e-02	ci left: 3.649965e-01	ci right 3.784408e-01	k: 7434	n:20000
BRCA2   20000 perm   8 sec   (2461 perm/sec)   p_kst 3.717000e-01   p_cons 1.575000e-02   p_joint 3.570000e-02

Joint ci ratio: 1.082674e-01	ci left: 3.959561e-02	ci right 4.416032e-02	k: 1255	n:30000
Cons ci ratio: 1.790047e-01	ci left: 1.432368e-02	ci right 1.717122e-02	k: 471	n:30000
KS ci ratio: 2.951956e-02	ci left: 3.646989e-01	ci right 3.756595e-01	k: 11105	n:30000
BRCA2   30000 perm   13 sec   (2386 perm/sec)   p_kst 3.701667e-01   p_cons 1.570000e-02   p_joint 4.183333e-02

Joint ci ratio: 9.844768e-02	ci left: 3.624504e-02	ci right 4.002239e-02	k: 1524	n:40000
Cons ci ratio: 1.571075e-01	ci left: 1.411992e-02	ci right 1.655118e-02	k: 612	n:40000
KS ci ratio: 2.542817e-02	ci left: 3.679335e-01	ci right 3.774350e-01	k: 14907	n:40000
BRCA2   40000 perm   17 sec   (2335 perm/sec)   p_kst 3.726750e-01   p_cons 1.530000e-02   p_joint 3.810000e-02

Joint ci ratio: 8.214517e-02	ci left: 4.176783e-02	ci right 4.536540e-02	k: 2177	n:50000
Cons ci ratio: 1.405449e-01	ci left: 1.424234e-02	ci right 1.641446e-02	k: 765	n:50000
KS ci ratio: 2.279723e-02	ci left: 3.673420e-01	ci right 3.758330e-01	k: 18579	n:50000
BRCA2   50000 perm   22 sec   (2300 perm/sec)   p_kst 3.715800e-01   p_cons 1.530000e-02   p_joint 4.354000e-02

Joint ci ratio: 7.967007e-02	ci left: 3.723608e-02	ci right 4.034207e-02	k: 2326	n:60000
Cons ci ratio: 1.291729e-01	ci left: 1.413938e-02	ci right 1.610793e-02	k: 906	n:60000
KS ci ratio: 2.085630e-02	ci left: 3.667003e-01	ci right 3.744456e-01	k: 22234	n:60000
BRCA2   60000 perm   26 sec   (2268 perm/sec)   p_kst 3.705667e-01   p_cons 1.510000e-02   p_joint 3.876667e-02

Joint ci ratio: 7.142261e-02	ci left: 3.978167e-02	ci right 4.274222e-02	k: 2887	n:70000
Cons ci ratio: 1.200043e-01	ci left: 1.411255e-02	ci right 1.592798e-02	k: 1050	n:70000
KS ci ratio: 1.927660e-02	ci left: 3.677761e-01	ci right 3.749488e-01	k: 25995	n:70000
BRCA2   70000 perm   31 sec   (2246 perm/sec)   p_kst 3.713571e-01   p_cons 1.500000e-02   p_joint 4.124286e-02

Joint ci ratio: 7.798981e-02	ci left: 2.941732e-02	ci right 3.181688e-02	k: 2448	n:80000
Cons ci ratio: 1.121185e-01	ci left: 1.420554e-02	ci right 1.590490e-02	k: 1203	n:80000
KS ci ratio: 1.757032e-02	ci left: 3.801661e-01	ci right 3.869174e-01	k: 30683	n:80000
BRCA2   80000 perm   36 sec   (2225 perm/sec)   p_kst 3.835375e-01   p_cons 1.503750e-02   p_joint 3.060000e-02

Joint ci ratio: 7.681456e-02	ci left: 2.704091e-02	ci right 2.921187e-02	k: 2530	n:90000
Cons ci ratio: 1.054105e-01	ci left: 1.433502e-02	ci right 1.594090e-02	k: 1361	n:90000
KS ci ratio: 1.735439e-02	ci left: 3.586485e-01	ci right 3.649382e-01	k: 32561	n:90000
BRCA2   90000 perm   41 sec   (2200 perm/sec)   p_kst 3.617889e-01   p_cons 1.512222e-02   p_joint 2.811111e-02

Joint ci ratio: 7.530804e-02	ci left: 2.538564e-02	ci right 2.738196e-02	k: 2637	n:100000
Cons ci ratio: 1.004175e-01	ci left: 1.425572e-02	ci right 1.577261e-02	k: 1500	n:100000
KS ci ratio: 1.647452e-02	ci left: 3.585114e-01	ci right 3.644767e-01	k: 36149	n:100000
BRCA2   100000 perm   46 sec   (2177 perm/sec)   p_kst 3.614900e-01   p_cons 1.500000e-02   p_joint 2.637000e-02

Joint ci ratio: 6.366328e-02	ci left: 3.225645e-02	ci right 3.438643e-02	k: 3664	n:110000
Cons ci ratio: 9.562980e-02	ci left: 1.432545e-02	ci right 1.577301e-02	k: 1654	n:110000
KS ci ratio: 1.571495e-02	ci left: 3.584422e-01	ci right 3.641288e-01	k: 39741	n:110000
BRCA2   110000 perm   51 sec   (2151 perm/sec)   p_kst 3.612818e-01   p_cons 1.503636e-02   p_joint 3.330909e-02

Outputting figure to mutsig2_images.part000000000017/BRCA2.12_10361_110000_0.36128_0.015036_0.033309.png
                gene_name: BRCA2
               theta_stop: 0.096 
                    nperm: 110000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.015 
      ci_cons_bounds_left: 0.014 
     ci_cons_bounds_right: 0.016 
                  p_joint: 0.033 
     ci_joint_bounds_left: 0.032 
    ci_joint_bounds_right: 0.034 

Current progress: 9 percent done.
BTBD12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.763342e-02	ci left: 6.586720e-01	ci right 6.772301e-01	k: 6680	n:10000
Cons ci ratio: 3.213668e-02	ci left: 5.883129e-01	ci right 6.076300e-01	k: 5980	n:10000
KS ci ratio: 3.851811e-02	ci left: 4.988503e-01	ci right 5.185446e-01	k: 5087	n:10000
BTBD12   10000 perm   3 sec   (3707 perm/sec)   p_kst 5.087000e-01   p_cons 5.980000e-01   p_joint 6.680000e-01

Outputting figure to mutsig2_images.part000000000017/BTBD12.11_5561_10000_0.5087_0.598_0.668.png
                gene_name: BTBD12
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 11 percent done.
BOD1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.881451e-01	ci left: 3.767505e-02	ci right 4.559480e-02	k: 415	n:10000
Cons ci ratio: 4.066371e-02	ci left: 4.717634e-01	ci right 4.914473e-01	k: 4816	n:10000
KS ci ratio: 2.423184e-01	ci left: 2.240510e-02	ci right 2.867545e-02	k: 254	n:10000
BOD1L   10000 perm   3 sec   (2861 perm/sec)   p_kst 2.540000e-02   p_cons 4.816000e-01   p_joint 4.150000e-02

Joint ci ratio: 9.709772e-02	ci left: 7.167988e-02	ci right 7.904415e-02	k: 1506	n:20000
Cons ci ratio: 2.912403e-02	ci left: 4.683080e-01	ci right 4.821992e-01	k: 9505	n:20000
KS ci ratio: 1.760084e-01	ci left: 2.206683e-02	ci right 2.637302e-02	k: 483	n:20000
BOD1L   20000 perm   8 sec   (2657 perm/sec)   p_kst 2.415000e-02   p_cons 4.752500e-01   p_joint 7.530000e-02

Joint ci ratio: 8.730545e-02	ci left: 6.021111e-02	ci right 6.574056e-02	k: 1888	n:30000
Cons ci ratio: 2.389423e-02	ci left: 4.672033e-01	ci right 4.785353e-01	k: 14186	n:30000
KS ci ratio: 1.431066e-01	ci left: 2.265144e-02	ci right 2.617482e-02	k: 731	n:30000
BOD1L   30000 perm   12 sec   (2581 perm/sec)   p_kst 2.436667e-02   p_cons 4.728667e-01   p_joint 6.293333e-02

Joint ci ratio: 7.541216e-02	ci left: 6.088387e-02	ci right 6.567977e-02	k: 2530	n:40000
Cons ci ratio: 2.067427e-02	ci left: 4.684217e-01	ci right 4.782322e-01	k: 18933	n:40000
KS ci ratio: 1.215308e-01	ci left: 2.380738e-02	ci right 2.691205e-02	k: 1013	n:40000
BOD1L   40000 perm   16 sec   (2538 perm/sec)   p_kst 2.532500e-02   p_cons 4.733250e-01   p_joint 6.325000e-02

Joint ci ratio: 8.049742e-02	ci left: 4.345438e-02	ci right 4.711864e-02	k: 2263	n:50000
Cons ci ratio: 1.814618e-02	ci left: 4.783511e-01	ci right 4.871309e-01	k: 24137	n:50000
KS ci ratio: 1.085032e-01	ci left: 2.405798e-02	ci right 2.683748e-02	k: 1271	n:50000
BOD1L   50000 perm   20 sec   (2503 perm/sec)   p_kst 2.542000e-02   p_cons 4.827400e-01   p_joint 4.526000e-02

Joint ci ratio: 5.444235e-02	ci left: 7.736395e-02	ci right 8.171016e-02	k: 4771	n:60000
Cons ci ratio: 1.652733e-02	ci left: 4.798772e-01	ci right 4.878910e-01	k: 29033	n:60000
KS ci ratio: 9.794896e-02	ci left: 2.472504e-02	ci right 2.728775e-02	k: 1559	n:60000
BOD1L   60000 perm   24 sec   (2453 perm/sec)   p_kst 2.598333e-02   p_cons 4.838833e-01   p_joint 7.951667e-02

Outputting figure to mutsig2_images.part000000000017/BOD1L.10_9260_60000_0.025983_0.48388_0.079517.png
                gene_name: BOD1L
               theta_stop: 0.098 
                    nperm: 60000 
                     p_ks: 0.026 
        ci_ks_bounds_left: 0.025 
       ci_ks_bounds_right: 0.027 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.080 
     ci_joint_bounds_left: 0.077 
    ci_joint_bounds_right: 0.082 

Current progress: 13 percent done.
BSN
Processing conservation and coverage...
84% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.372187e-02	ci left: 1.722191e-01	ci right 1.873680e-01	k: 1797	n:10000
Cons ci ratio: 2.539254e-02	ci left: 6.953478e-01	ci right 7.133330e-01	k: 7044	n:10000
KS ci ratio: 1.413621e-01	ci left: 6.633192e-02	ci right 7.651945e-02	k: 713	n:10000
BSN   10000 perm   4 sec   (2662 perm/sec)   p_kst 7.130000e-02   p_cons 7.044000e-01   p_joint 1.797000e-01

Joint ci ratio: 7.636853e-02	ci left: 1.119372e-01	ci right 1.208747e-01	k: 2327	n:20000
Cons ci ratio: 1.751474e-02	ci left: 7.083356e-01	ci right 7.209019e-01	k: 14293	n:20000
KS ci ratio: 1.010697e-01	ci left: 6.640396e-02	ci right 7.352168e-02	k: 1398	n:20000
BSN   20000 perm   8 sec   (2446 perm/sec)   p_kst 6.990000e-02   p_cons 7.146500e-01   p_joint 1.163500e-01

Joint ci ratio: 6.149134e-02	ci left: 1.156195e-01	ci right 1.229877e-01	k: 3578	n:30000
Cons ci ratio: 1.430843e-02	ci left: 7.092849e-01	ci right 7.195402e-01	k: 21433	n:30000
KS ci ratio: 8.228152e-02	ci left: 6.743212e-02	ci right 7.325142e-02	k: 2109	n:30000
BSN   30000 perm   13 sec   (2356 perm/sec)   p_kst 7.030000e-02   p_cons 7.144333e-01   p_joint 1.192667e-01

Outputting figure to mutsig2_images.part000000000017/BSN.9_11821_30000_0.0703_0.71443_0.11927.png
                gene_name: BSN
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.070 
        ci_ks_bounds_left: 0.067 
       ci_ks_bounds_right: 0.073 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 16 percent done.
BRAF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.754621e-02	ci left: 1.596393e-01	ci right 1.743552e-01	k: 1669	n:10000
Cons ci ratio: 6.981304e-02	ci left: 2.312609e-01	ci right 2.480910e-01	k: 2396	n:10000
KS ci ratio: 1.079470e-01	ci left: 1.101767e-01	ci right 1.228477e-01	k: 1164	n:10000
BRAF   10000 perm   2 sec   (5216 perm/sec)   p_kst 1.164000e-01   p_cons 2.396000e-01   p_joint 1.669000e-01

Joint ci ratio: 7.527493e-02	ci left: 1.148875e-01	ci right 1.239235e-01	k: 2387	n:20000
Cons ci ratio: 5.029057e-02	ci left: 2.271058e-01	ci right 2.388719e-01	k: 4659	n:20000
KS ci ratio: 7.830386e-02	ci left: 1.069730e-01	ci right 1.157403e-01	k: 2226	n:20000
BRAF   20000 perm   4 sec   (4655 perm/sec)   p_kst 1.113000e-01   p_cons 2.329500e-01   p_joint 1.193500e-01

Outputting figure to mutsig2_images.part000000000017/BRAF.8_2373_20000_0.1113_0.23295_0.11935.png
                gene_name: BRAF
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 18 percent done.
BRWD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.723519e-02	ci left: 3.100670e-01	ci right 3.284384e-01	k: 3192	n:10000
Cons ci ratio: 1.455385e-02	ci left: 8.723452e-01	ci right 8.852332e-01	k: 8789	n:10000
KS ci ratio: 7.235652e-02	ci left: 2.186229e-01	ci right 2.351365e-01	k: 2268	n:10000
BRWD1   10000 perm   3 sec   (3535 perm/sec)   p_kst 2.268000e-01   p_cons 8.789000e-01   p_joint 3.192000e-01

Outputting figure to mutsig2_images.part000000000017/BRWD1.8_7384_10000_0.2268_0.8789_0.3192.png
                gene_name: BRWD1
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 20 percent done.
BMPER
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.367280e-02	ci left: 4.363242e-01	ci right 4.559072e-01	k: 4461	n:10000
Cons ci ratio: 3.980231e-02	ci left: 4.824548e-01	ci right 5.021497e-01	k: 4923	n:10000
KS ci ratio: 4.735700e-02	ci left: 3.968515e-01	ci right 4.162030e-01	k: 4065	n:10000
BMPER   10000 perm   2 sec   (5077 perm/sec)   p_kst 4.065000e-01   p_cons 4.923000e-01   p_joint 4.461000e-01

Outputting figure to mutsig2_images.part000000000017/BMPER.6_2118_10000_0.4065_0.4923_0.4461.png
                gene_name: BMPER
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 22 percent done.
BNC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.025071e-02	ci left: 4.768587e-01	ci right 4.965490e-01	k: 4867	n:10000
Cons ci ratio: 6.553540e-02	ci left: 2.547867e-01	ci right 2.721513e-01	k: 2634	n:10000
KS ci ratio: 2.578324e-02	ci left: 6.888946e-01	ci right 7.069900e-01	k: 6980	n:10000
BNC2   10000 perm   2 sec   (4879 perm/sec)   p_kst 6.980000e-01   p_cons 2.634000e-01   p_joint 4.867000e-01

Outputting figure to mutsig2_images.part000000000017/BNC2.6_3328_10000_0.698_0.2634_0.4867.png
                gene_name: BNC2
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 24 percent done.
BPIL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.761474e-02	ci left: 6.589740e-01	ci right 6.775279e-01	k: 6683	n:10000
Cons ci ratio: 6.508261e-02	ci left: 2.574577e-01	ci right 2.748787e-01	k: 2661	n:10000
KS ci ratio: 1.513557e-02	ci left: 8.635571e-01	ci right 8.768264e-01	k: 8703	n:10000
BPIL2   10000 perm   2 sec   (5687 perm/sec)   p_kst 8.703000e-01   p_cons 2.661000e-01   p_joint 6.683000e-01

Outputting figure to mutsig2_images.part000000000017/BPIL2.6_1584_10000_0.8703_0.2661_0.6683.png
                gene_name: BPIL2
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 27 percent done.
BMS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.115659e-02	ci left: 6.031711e-01	ci right 6.223632e-01	k: 6128	n:10000
KS ci ratio: 2.068535e-02	ci left: 7.739786e-01	ci right 7.902567e-01	k: 7822	n:10000
BMS1   10000 perm   2 sec   (4516 perm/sec)   p_kst 7.822000e-01   p_cons 6.128000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000017/BMS1.5_3937_10000_0.7822_0.6128_1.png
                gene_name: BMS1
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 29 percent done.
BNC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.948178e-02	ci left: 2.937039e-01	ci right 3.118111e-01	k: 3027	n:10000
Cons ci ratio: 1.827128e-01	ci left: 3.996794e-02	ci right 4.810038e-02	k: 439	n:10000
KS ci ratio: 2.245679e-02	ci left: 7.443233e-01	ci right 7.613292e-01	k: 7529	n:10000
BNC1   10000 perm   2 sec   (4979 perm/sec)   p_kst 7.529000e-01   p_cons 4.390000e-02   p_joint 3.027000e-01

Joint ci ratio: 5.214622e-02	ci left: 2.145226e-01	ci right 2.260588e-01	k: 4405	n:20000
Cons ci ratio: 1.319696e-01	ci left: 3.945544e-02	ci right 4.507862e-02	k: 844	n:20000
KS ci ratio: 1.543340e-02	ci left: 7.573965e-01	ci right 7.692268e-01	k: 15267	n:20000
BNC1   20000 perm   4 sec   (4471 perm/sec)   p_kst 7.633500e-01   p_cons 4.220000e-02   p_joint 2.202500e-01

Joint ci ratio: 3.839094e-02	ci left: 2.529234e-01	ci right 2.628569e-01	k: 7736	n:30000
Cons ci ratio: 1.084477e-01	ci left: 3.946574e-02	ci right 4.402355e-02	k: 1251	n:30000
KS ci ratio: 1.262632e-02	ci left: 7.577768e-01	ci right 7.674389e-01	k: 22879	n:30000
BNC1   30000 perm   7 sec   (4282 perm/sec)   p_kst 7.626333e-01   p_cons 4.170000e-02   p_joint 2.578667e-01

Joint ci ratio: 3.415984e-02	ci left: 2.434259e-01	ci right 2.519108e-01	k: 9906	n:40000
Cons ci ratio: 9.323129e-02	ci left: 4.034835e-02	ci right 4.431844e-02	k: 1692	n:40000
KS ci ratio: 1.092138e-02	ci left: 7.588766e-01	ci right 7.672351e-01	k: 30523	n:40000
BNC1   40000 perm   10 sec   (4145 perm/sec)   p_kst 7.630750e-01   p_cons 4.230000e-02   p_joint 2.476500e-01

Outputting figure to mutsig2_images.part000000000017/BNC1.5_3005_40000_0.76307_0.0423_0.24765.png
                gene_name: BNC1
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.042 
      ci_cons_bounds_left: 0.040 
     ci_cons_bounds_right: 0.044 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 31 percent done.
BRPF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.078065e-02	ci left: 3.638081e-01	ci right 3.828658e-01	k: 3733	n:10000
Cons ci ratio: 7.924085e-02	ci left: 1.887513e-01	ci right 2.044258e-01	k: 1965	n:10000
KS ci ratio: 5.190602e-02	ci left: 3.536657e-01	ci right 3.726141e-01	k: 3631	n:10000
BRPF3   10000 perm   2 sec   (4701 perm/sec)   p_kst 3.631000e-01   p_cons 1.965000e-01   p_joint 3.733000e-01

Outputting figure to mutsig2_images.part000000000017/BRPF3.5_3666_10000_0.3631_0.1965_0.3733.png
                gene_name: BRPF3
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 33 percent done.
BRSK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.045589e-02	ci left: 1.509016e-01	ci right 1.652982e-01	k: 1580	n:10000
Cons ci ratio: 3.000613e-02	ci left: 6.209529e-01	ci right 6.399710e-01	k: 6305	n:10000
KS ci ratio: 2.177074e-01	ci left: 2.797424e-02	ci right 3.490226e-02	k: 313	n:10000
BRSK1   10000 perm   2 sec   (5204 perm/sec)   p_kst 3.130000e-02   p_cons 6.305000e-01   p_joint 1.580000e-01

Joint ci ratio: 9.409227e-02	ci left: 7.608071e-02	ci right 8.364197e-02	k: 1596	n:20000
Cons ci ratio: 2.019397e-02	ci left: 6.466071e-01	ci right 6.598483e-01	k: 13065	n:20000
KS ci ratio: 1.541997e-01	ci left: 2.888197e-02	ci right 3.375555e-02	k: 625	n:20000
BRSK1   20000 perm   4 sec   (4709 perm/sec)   p_kst 3.125000e-02   p_cons 6.532500e-01   p_joint 7.980000e-02

Joint ci ratio: 7.638557e-02	ci left: 7.760915e-02	ci right 8.380567e-02	k: 2420	n:30000
Cons ci ratio: 1.642005e-02	ci left: 6.497231e-01	ci right 6.605135e-01	k: 19654	n:30000
KS ci ratio: 1.271682e-01	ci left: 2.874456e-02	ci right 3.268035e-02	k: 920	n:30000
BRSK1   30000 perm   7 sec   (4492 perm/sec)   p_kst 3.066667e-02   p_cons 6.551333e-01   p_joint 8.066667e-02

Joint ci ratio: 7.388139e-02	ci left: 6.331569e-02	ci right 6.819759e-02	k: 2629	n:40000
Cons ci ratio: 1.451992e-02	ci left: 6.409397e-01	ci right 6.503392e-01	k: 25826	n:40000
KS ci ratio: 1.086790e-01	ci left: 2.978556e-02	ci right 3.323290e-02	k: 1259	n:40000
BRSK1   40000 perm   9 sec   (4360 perm/sec)   p_kst 3.147500e-02   p_cons 6.456500e-01   p_joint 6.572500e-02

Joint ci ratio: 6.171690e-02	ci left: 7.235116e-02	ci right 7.697837e-02	k: 3732	n:50000
Cons ci ratio: 1.301689e-02	ci left: 6.403864e-01	ci right 6.487968e-01	k: 32230	n:50000
KS ci ratio: 9.810975e-02	ci left: 2.942001e-02	ci right 3.247477e-02	k: 1546	n:50000
BRSK1   50000 perm   12 sec   (4246 perm/sec)   p_kst 3.092000e-02   p_cons 6.446000e-01   p_joint 7.464000e-02

Outputting figure to mutsig2_images.part000000000017/BRSK1.5_2413_50000_0.03092_0.6446_0.07464.png
                gene_name: BRSK1
               theta_stop: 0.098 
                    nperm: 50000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.075 
     ci_joint_bounds_left: 0.072 
    ci_joint_bounds_right: 0.077 

Current progress: 36 percent done.
BPIL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.873806e-03	ci left: 9.573329e-01	ci right 9.649955e-01	k: 9613	n:10000
KS ci ratio: 2.530722e-02	ci left: 6.967598e-01	ci right 7.147202e-01	k: 7058	n:10000
BPIL1   10000 perm   2 sec   (5818 perm/sec)   p_kst 7.058000e-01   p_cons 9.613000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000017/BPIL1.4_1437_10000_0.7058_0.9613_1.png
                gene_name: BPIL1
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 38 percent done.
BRIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.375324e-02	ci left: 1.417796e-01	ci right 1.558256e-01	k: 1487	n:10000
Cons ci ratio: 9.842379e-02	ci left: 1.301213e-01	ci right 1.436909e-01	k: 1368	n:10000
KS ci ratio: 8.723287e-02	ci left: 1.606216e-01	ci right 1.753724e-01	k: 1679	n:10000
BRIP1   10000 perm   2 sec   (4935 perm/sec)   p_kst 1.679000e-01   p_cons 1.368000e-01   p_joint 1.487000e-01

Outputting figure to mutsig2_images.part000000000017/BRIP1.4_3826_10000_0.1679_0.1368_0.1487.png
                gene_name: BRIP1
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.16 

Current progress: 40 percent done.
BTBD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.859208e-02	ci left: 6.432750e-01	ci right 6.620360e-01	k: 6527	n:10000
Cons ci ratio: 1.635946e-02	ci left: 8.445820e-01	ci right 8.586125e-01	k: 8517	n:10000
KS ci ratio: 4.688919e-02	ci left: 4.016326e-01	ci right 4.210191e-01	k: 4113	n:10000
BTBD3   10000 perm   2 sec   (6158 perm/sec)   p_kst 4.113000e-01   p_cons 8.517000e-01   p_joint 6.527000e-01

Outputting figure to mutsig2_images.part000000000017/BTBD3.4_1585_10000_0.4113_0.8517_0.6527.png
                gene_name: BTBD3
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 42 percent done.
BMPR1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.963710e-02	ci left: 2.926135e-01	ci right 3.107021e-01	k: 3016	n:10000
Cons ci ratio: 8.241153e-02	ci left: 1.768418e-01	ci right 1.921425e-01	k: 1844	n:10000
KS ci ratio: 5.992136e-02	ci left: 2.906312e-01	ci right 3.086857e-01	k: 2996	n:10000
BMPR1A   10000 perm   2 sec   (6138 perm/sec)   p_kst 2.996000e-01   p_cons 1.844000e-01   p_joint 3.016000e-01

Outputting figure to mutsig2_images.part000000000017/BMPR1A.3_1643_10000_0.2996_0.1844_0.3016.png
                gene_name: BMPR1A
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 44 percent done.
BPI
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.221246e-02	ci left: 2.193138e-01	ci right 2.358452e-01	k: 2275	n:10000
Cons ci ratio: 7.266726e-02	ci left: 2.171426e-01	ci right 2.336177e-01	k: 2253	n:10000
KS ci ratio: 6.609721e-02	ci left: 2.515227e-01	ci right 2.688172e-01	k: 2601	n:10000
BPI   10000 perm   2 sec   (5913 perm/sec)   p_kst 2.601000e-01   p_cons 2.253000e-01   p_joint 2.275000e-01

Outputting figure to mutsig2_images.part000000000017/BPI.3_1524_10000_0.2601_0.2253_0.2275.png
                gene_name: BPI
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 47 percent done.
BRD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.908455e-02	ci left: 4.915510e-01	ci right 5.112482e-01	k: 5014	n:10000
Cons ci ratio: 1.700177e-02	ci left: 8.343964e-01	ci right 8.488040e-01	k: 8417	n:10000
KS ci ratio: 5.339733e-02	ci left: 3.407457e-01	ci right 3.595416e-01	k: 3501	n:10000
BRD4   10000 perm   2 sec   (4815 perm/sec)   p_kst 3.501000e-01   p_cons 8.417000e-01   p_joint 5.014000e-01

Outputting figure to mutsig2_images.part000000000017/BRD4.3_4180_10000_0.3501_0.8417_0.5014.png
                gene_name: BRD4
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 49 percent done.
BRDT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.275060e-02	ci left: 2.167479e-01	ci right 2.332127e-01	k: 2249	n:10000
Cons ci ratio: 3.139998e-02	ci left: 5.994557e-01	ci right 6.186808e-01	k: 6091	n:10000
KS ci ratio: 1.699685e-01	ci left: 4.619368e-02	ci right 5.487054e-02	k: 504	n:10000
BRDT   10000 perm   2 sec   (5357 perm/sec)   p_kst 5.040000e-02   p_cons 6.091000e-01   p_joint 2.249000e-01

Joint ci ratio: 6.087983e-02	ci left: 1.664471e-01	ci right 1.769485e-01	k: 3433	n:20000
Cons ci ratio: 2.217167e-02	ci left: 6.029991e-01	ci right 6.165690e-01	k: 12196	n:20000
KS ci ratio: 1.169904e-01	ci left: 5.003249e-02	ci right 5.629822e-02	k: 1062	n:20000
BRDT   20000 perm   4 sec   (4787 perm/sec)   p_kst 5.310000e-02   p_cons 6.098000e-01   p_joint 1.716500e-01

Joint ci ratio: 5.846997e-02	ci left: 1.264771e-01	ci right 1.341280e-01	k: 3908	n:30000
Cons ci ratio: 1.856062e-02	ci left: 5.922923e-01	ci right 6.034221e-01	k: 17936	n:30000
KS ci ratio: 9.679586e-02	ci left: 4.931898e-02	ci right 5.436826e-02	k: 1554	n:30000
BRDT   30000 perm   7 sec   (4562 perm/sec)   p_kst 5.180000e-02   p_cons 5.978667e-01   p_joint 1.302667e-01

Outputting figure to mutsig2_images.part000000000017/BRDT.3_2916_30000_0.0518_0.59787_0.13027.png
                gene_name: BRDT
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.052 
        ci_ks_bounds_left: 0.049 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 51 percent done.
BRI3BP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.281878e-02	ci left: 7.382572e-01	ci right 7.553988e-01	k: 7469	n:10000
Cons ci ratio: 4.246508e-02	ci left: 4.501944e-01	ci right 4.698289e-01	k: 4600	n:10000
KS ci ratio: 2.925084e-02	ci left: 6.328151e-01	ci right 6.517020e-01	k: 6423	n:10000
BRI3BP   10000 perm   2 sec   (6377 perm/sec)   p_kst 6.423000e-01   p_cons 4.600000e-01   p_joint 7.469000e-01

Outputting figure to mutsig2_images.part000000000017/BRI3BP.3_768_10000_0.6423_0.46_0.7469.png
                gene_name: BRI3BP
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 53 percent done.
BRPF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.456111e-01	ci left: 1.050669e-02	ci right 1.498385e-02	k: 126	n:10000
Cons ci ratio: 8.754621e-02	ci left: 1.596393e-01	ci right 1.743552e-01	k: 1669	n:10000
KS ci ratio: 4.233520e-01	ci left: 6.705543e-03	ci right 1.038936e-02	k: 84	n:10000
BRPF1   10000 perm   2 sec   (5004 perm/sec)   p_kst 8.400000e-03   p_cons 1.669000e-01   p_joint 1.260000e-02

Joint ci ratio: 2.360574e-01	ci left: 1.199373e-02	ci right 1.524994e-02	k: 271	n:20000
Cons ci ratio: 6.283369e-02	ci left: 1.577571e-01	ci right 1.680411e-01	k: 3257	n:20000
KS ci ratio: 2.845415e-01	ci left: 8.062881e-03	ci right 1.078261e-02	k: 187	n:20000
BRPF1   20000 perm   4 sec   (4477 perm/sec)   p_kst 9.350000e-03   p_cons 1.628500e-01   p_joint 1.355000e-02

Joint ci ratio: 1.668478e-01	ci left: 1.655765e-02	ci right 1.960336e-02	k: 541	n:30000
Cons ci ratio: 5.136655e-02	ci left: 1.583746e-01	ci right 1.667575e-01	k: 4876	n:30000
KS ci ratio: 2.310914e-01	ci left: 8.401935e-03	ci right 1.062794e-02	k: 284	n:30000
BRPF1   30000 perm   7 sec   (4232 perm/sec)   p_kst 9.466667e-03   p_cons 1.625333e-01   p_joint 1.803333e-02

Joint ci ratio: 1.342322e-01	ci left: 1.947215e-02	ci right 2.229801e-02	k: 834	n:40000
Cons ci ratio: 4.449166e-02	ci left: 1.588969e-01	ci right 1.661522e-01	k: 6500	n:40000
KS ci ratio: 1.993389e-01	ci left: 8.620141e-03	ci right 1.055206e-02	k: 382	n:40000
BRPF1   40000 perm   10 sec   (4100 perm/sec)   p_kst 9.550000e-03   p_cons 1.625000e-01   p_joint 2.085000e-02

Joint ci ratio: 1.081981e-01	ci left: 2.419428e-02	ci right 2.698117e-02	k: 1278	n:50000
Cons ci ratio: 3.991564e-02	ci left: 1.584627e-01	ci right 1.649366e-01	k: 8084	n:50000
KS ci ratio: 1.767632e-01	ci left: 8.878603e-03	ci right 1.061903e-02	k: 486	n:50000
BRPF1   50000 perm   12 sec   (4007 perm/sec)   p_kst 9.720000e-03   p_cons 1.616800e-01   p_joint 2.556000e-02

Joint ci ratio: 9.956619e-02	ci left: 2.392805e-02	ci right 2.645149e-02	k: 1510	n:60000
Cons ci ratio: 3.649847e-02	ci left: 1.582989e-01	ci right 1.642006e-01	k: 9674	n:60000
KS ci ratio: 1.635525e-01	ci left: 8.707304e-03	ci right 1.027403e-02	k: 568	n:60000
BRPF1   60000 perm   15 sec   (3924 perm/sec)   p_kst 9.466667e-03   p_cons 1.612333e-01   p_joint 2.516667e-02

Joint ci ratio: 9.299085e-02	ci left: 2.360469e-02	ci right 2.592065e-02	k: 1732	n:70000
Cons ci ratio: 3.381158e-02	ci left: 1.583552e-01	ci right 1.638158e-01	k: 11275	n:70000
KS ci ratio: 1.514012e-01	ci left: 8.767145e-03	ci right 1.021681e-02	k: 663	n:70000
BRPF1   70000 perm   18 sec   (3852 perm/sec)   p_kst 9.471429e-03   p_cons 1.610714e-01   p_joint 2.474286e-02

Joint ci ratio: 8.019534e-02	ci left: 2.783578e-02	ci right 3.017354e-02	k: 2319	n:80000
Cons ci ratio: 3.160864e-02	ci left: 1.586952e-01	ci right 1.638044e-01	k: 12899	n:80000
KS ci ratio: 1.399438e-01	ci left: 9.032416e-03	ci right 1.040349e-02	k: 776	n:80000
BRPF1   80000 perm   21 sec   (3767 perm/sec)   p_kst 9.700000e-03   p_cons 1.612375e-01   p_joint 2.898750e-02

Joint ci ratio: 7.213844e-02	ci left: 3.061952e-02	ci right 3.292190e-02	k: 2858	n:90000
Cons ci ratio: 2.978074e-02	ci left: 1.590239e-01	ci right 1.638424e-01	k: 14528	n:90000
KS ci ratio: 1.311192e-01	ci left: 9.188203e-03	ci right 1.048813e-02	k: 884	n:90000
BRPF1   90000 perm   24 sec   (3698 perm/sec)   p_kst 9.822222e-03   p_cons 1.614222e-01   p_joint 3.175556e-02

Joint ci ratio: 7.170352e-02	ci left: 2.797845e-02	ci right 3.006899e-02	k: 2901	n:100000
Cons ci ratio: 2.823721e-02	ci left: 1.592936e-01	ci right 1.638660e-01	k: 16157	n:100000
KS ci ratio: 1.246684e-01	ci left: 9.179316e-03	ci right 1.040937e-02	k: 978	n:100000
BRPF1   100000 perm   28 sec   (3632 perm/sec)   p_kst 9.780000e-03   p_cons 1.615700e-01   p_joint 2.901000e-02

Joint ci ratio: 6.846833e-02	ci left: 2.794471e-02	ci right 2.993477e-02	k: 3182	n:110000
Cons ci ratio: 2.690039e-02	ci left: 1.596281e-01	ci right 1.639897e-01	k: 17798	n:110000
KS ci ratio: 1.192531e-01	ci left: 9.146864e-03	ci right 1.031557e-02	k: 1069	n:110000
BRPF1   110000 perm   31 sec   (3569 perm/sec)   p_kst 9.718182e-03   p_cons 1.618000e-01   p_joint 2.892727e-02

Joint ci ratio: 6.636847e-02	ci left: 2.731161e-02	ci right 2.919462e-02	k: 3389	n:120000
Cons ci ratio: 2.577741e-02	ci left: 1.594883e-01	ci right 1.636614e-01	k: 19388	n:120000
KS ci ratio: 1.146869e-01	ci left: 9.088400e-03	ci right 1.020216e-02	k: 1156	n:120000
BRPF1   120000 perm   34 sec   (3516 perm/sec)   p_kst 9.633333e-03   p_cons 1.615667e-01   p_joint 2.824167e-02

Joint ci ratio: 5.905981e-02	ci left: 3.180804e-02	ci right 3.375133e-02	k: 4260	n:130000
Cons ci ratio: 2.478427e-02	ci left: 1.593732e-01	ci right 1.633804e-01	k: 20978	n:130000
KS ci ratio: 1.096771e-01	ci left: 9.196784e-03	ci right 1.027141e-02	k: 1264	n:130000
BRPF1   130000 perm   38 sec   (3461 perm/sec)   p_kst 9.723077e-03   p_cons 1.613692e-01   p_joint 3.276923e-02

Joint ci ratio: 6.034715e-02	ci left: 2.837351e-02	ci right 3.014605e-02	k: 4095	n:140000
Cons ci ratio: 2.388888e-02	ci left: 1.593768e-01	ci right 1.632372e-01	k: 22582	n:140000
KS ci ratio: 1.066525e-01	ci left: 9.047156e-03	ci right 1.007331e-02	k: 1337	n:140000
BRPF1   140000 perm   41 sec   (3409 perm/sec)   p_kst 9.550000e-03   p_cons 1.613000e-01   p_joint 2.925000e-02

Joint ci ratio: 6.283086e-02	ci left: 2.449803e-02	ci right 2.609372e-02	k: 3793	n:150000
Cons ci ratio: 2.311193e-02	ci left: 1.590570e-01	ci right 1.627827e-01	k: 24137	n:150000
KS ci ratio: 1.024808e-01	ci left: 9.164690e-03	ci right 1.016107e-02	k: 1448	n:150000
BRPF1   150000 perm   45 sec   (3355 perm/sec)   p_kst 9.653333e-03   p_cons 1.609133e-01   p_joint 2.528667e-02

Joint ci ratio: 6.725049e-02	ci left: 2.009399e-02	ci right 2.149845e-02	k: 3326	n:160000
Cons ci ratio: 2.237555e-02	ci left: 1.591462e-01	ci right 1.627536e-01	k: 25751	n:160000
KS ci ratio: 9.908434e-02	ci left: 9.207247e-03	ci right 1.017315e-02	k: 1549	n:160000
BRPF1   160000 perm   48 sec   (3305 perm/sec)   p_kst 9.681250e-03   p_cons 1.609437e-01   p_joint 2.078750e-02

Outputting figure to mutsig2_images.part000000000017/BRPF1.3_3715_160000_0.0096813_0.16094_0.020788.png
                gene_name: BRPF1
               theta_stop: 0.099 
                    nperm: 160000 
                     p_ks: 0.0097 
        ci_ks_bounds_left: 0.0092 
       ci_ks_bounds_right: 0.010 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.021 
     ci_joint_bounds_left: 0.020 
    ci_joint_bounds_right: 0.021 

Current progress: 56 percent done.
BSND
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.549010e-02	ci left: 6.937343e-01	ci right 7.117474e-01	k: 7028	n:10000
Cons ci ratio: 5.731428e-02	ci left: 3.094718e-01	ci right 3.278340e-01	k: 3186	n:10000
KS ci ratio: 2.058215e-02	ci left: 7.757010e-01	ci right 7.919333e-01	k: 7839	n:10000
BSND   10000 perm   2 sec   (6321 perm/sec)   p_kst 7.839000e-01   p_cons 3.186000e-01   p_joint 7.028000e-01

Outputting figure to mutsig2_images.part000000000017/BSND.3_979_10000_0.7839_0.3186_0.7028.png
                gene_name: BSND
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 58 percent done.
BTBD8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.552846e-02	ci left: 8.575336e-01	ci right 8.710534e-01	k: 8644	n:10000
KS ci ratio: 2.795168e-02	ci left: 6.535385e-01	ci right 6.721666e-01	k: 6629	n:10000
BTBD8   10000 perm   2 sec   (6114 perm/sec)   p_kst 6.629000e-01   p_cons 8.644000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000017/BTBD8.3_1173_10000_0.6629_0.8644_1.png
                gene_name: BTBD8
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 60 percent done.
BMX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.866778e-02	ci left: 6.420678e-01	ci right 6.608439e-01	k: 6515	n:10000
Cons ci ratio: 6.089172e-02	ci left: 2.839917e-01	ci right 3.019291e-01	k: 2929	n:10000
KS ci ratio: 2.103697e-02	ci left: 7.681038e-01	ci right 7.845349e-01	k: 7764	n:10000
BMX   10000 perm   2 sec   (6319 perm/sec)   p_kst 7.764000e-01   p_cons 2.929000e-01   p_joint 6.515000e-01

Outputting figure to mutsig2_images.part000000000017/BMX.2_2100_10000_0.7764_0.2929_0.6515.png
                gene_name: BMX
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 62 percent done.
BNIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.380435e-03	ci left: 9.787712e-01	ci right 9.841431e-01	k: 9816	n:10000
Cons ci ratio: 7.047050e-02	ci left: 2.279029e-01	ci right 2.446510e-01	k: 2362	n:10000
KS ci ratio: 2.396016e-02	ci left: 7.191628e-01	ci right 7.367042e-01	k: 7280	n:10000
BNIP1   10000 perm   1 sec   (6925 perm/sec)   p_kst 7.280000e-01   p_cons 2.362000e-01   p_joint 9.816000e-01

Outputting figure to mutsig2_images.part000000000017/BNIP1.2_844_10000_0.728_0.2362_0.9816.png
                gene_name: BNIP1
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 64 percent done.
BOC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.282959e-02	ci left: 5.779777e-01	ci right 5.973712e-01	k: 5877	n:10000
Cons ci ratio: 5.400106e-02	ci left: 3.356792e-01	ci right 3.544111e-01	k: 3450	n:10000
KS ci ratio: 2.874988e-02	ci left: 6.407601e-01	ci right 6.595523e-01	k: 6502	n:10000
BOC   10000 perm   2 sec   (5316 perm/sec)   p_kst 6.502000e-01   p_cons 3.450000e-01   p_joint 5.877000e-01

Outputting figure to mutsig2_images.part000000000017/BOC.2_3417_10000_0.6502_0.345_0.5877.png
                gene_name: BOC
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 67 percent done.
BOLA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.903033e-01	ci left: 3.681611e-02	ci right 4.465430e-02	k: 406	n:10000
Cons ci ratio: 4.345259e-02	ci left: 4.388183e-01	ci right 4.584117e-01	k: 4486	n:10000
KS ci ratio: 2.723101e-01	ci left: 1.753307e-02	ci right 2.315124e-02	k: 202	n:10000
BOLA3   10000 perm   1 sec   (7206 perm/sec)   p_kst 2.020000e-02   p_cons 4.486000e-01   p_joint 4.060000e-02

Joint ci ratio: 1.373166e-01	ci left: 3.645585e-02	ci right 4.187918e-02	k: 782	n:20000
Cons ci ratio: 3.043493e-02	ci left: 4.464329e-01	ci right 4.602807e-01	k: 9067	n:20000
KS ci ratio: 1.883388e-01	ci left: 1.920075e-02	ci right 2.324013e-02	k: 423	n:20000
BOLA3   20000 perm   3 sec   (6200 perm/sec)   p_kst 2.115000e-02   p_cons 4.533500e-01   p_joint 3.910000e-02

Joint ci ratio: 1.127958e-01	ci left: 3.651309e-02	ci right 4.091016e-02	k: 1160	n:30000
Cons ci ratio: 2.494199e-02	ci left: 4.458903e-01	ci right 4.571858e-01	k: 13546	n:30000
KS ci ratio: 1.484976e-01	ci left: 2.101211e-02	ci right 2.441452e-02	k: 680	n:30000
BOLA3   30000 perm   5 sec   (5837 perm/sec)   p_kst 2.266667e-02   p_cons 4.515333e-01   p_joint 3.866667e-02

Joint ci ratio: 7.794159e-02	ci left: 5.715223e-02	ci right 6.181198e-02	k: 2378	n:40000
Cons ci ratio: 2.156839e-02	ci left: 4.473886e-01	ci right 4.571684e-01	k: 18091	n:40000
KS ci ratio: 1.281706e-01	ci left: 2.138366e-02	ci right 2.433617e-02	k: 913	n:40000
BOLA3   40000 perm   7 sec   (5600 perm/sec)   p_kst 2.282500e-02   p_cons 4.522750e-01   p_joint 5.945000e-02

Joint ci ratio: 7.664034e-02	ci left: 4.781129e-02	ci right 5.164120e-02	k: 2485	n:50000
Cons ci ratio: 1.931236e-02	ci left: 4.473708e-01	ci right 4.561148e-01	k: 22587	n:50000
KS ci ratio: 1.151303e-01	ci left: 2.135392e-02	ci right 2.398191e-02	k: 1132	n:50000
BOLA3   50000 perm   9 sec   (5419 perm/sec)   p_kst 2.264000e-02   p_cons 4.517400e-01   p_joint 4.970000e-02

Joint ci ratio: 7.245351e-02	ci left: 4.482879e-02	ci right 4.821524e-02	k: 2790	n:60000
Cons ci ratio: 1.763537e-02	ci left: 4.475955e-01	ci right 4.555759e-01	k: 27095	n:60000
KS ci ratio: 1.054410e-01	ci left: 2.132816e-02	ci right 2.371834e-02	k: 1350	n:60000
BOLA3   60000 perm   11 sec   (5258 perm/sec)   p_kst 2.250000e-02   p_cons 4.515833e-01   p_joint 4.650000e-02

Joint ci ratio: 7.394224e-02	ci left: 3.717091e-02	ci right 4.003893e-02	k: 2701	n:70000
Cons ci ratio: 1.633659e-02	ci left: 4.476086e-01	ci right 4.549955e-01	k: 31591	n:70000
KS ci ratio: 9.712164e-02	ci left: 2.163719e-02	ci right 2.385976e-02	k: 1591	n:70000
BOLA3   70000 perm   14 sec   (5115 perm/sec)   p_kst 2.272857e-02   p_cons 4.513000e-01   p_joint 3.858571e-02

Outputting figure to mutsig2_images.part000000000017/BOLA3.2_411_70000_0.022729_0.4513_0.038586.png
                gene_name: BOLA3
               theta_stop: 0.097 
                    nperm: 70000 
                     p_ks: 0.023 
        ci_ks_bounds_left: 0.022 
       ci_ks_bounds_right: 0.024 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.039 
     ci_joint_bounds_left: 0.037 
    ci_joint_bounds_right: 0.040 

Current progress: 69 percent done.
BOLL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.715629e-02	ci left: 3.106623e-01	ci right 3.290427e-01	k: 3198	n:10000
KS ci ratio: 2.806431e-02	ci left: 6.517269e-01	ci right 6.703792e-01	k: 6611	n:10000
BOLL   10000 perm   1 sec   (6726 perm/sec)   p_kst 6.611000e-01   p_cons 3.198000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000017/BOLL.2_932_10000_0.6611_0.3198_1.png
                gene_name: BOLL
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
BPHL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.613273e-02	ci left: 4.095037e-01	ci right 4.289434e-01	k: 4192	n:10000
KS ci ratio: 1.012743e-02	ci left: 9.325769e-01	ci right 9.421664e-01	k: 9375	n:10000
BPHL   10000 perm   1 sec   (6757 perm/sec)   p_kst 9.375000e-01   p_cons 4.192000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000017/BPHL.2_904_10000_0.9375_0.4192_1.png
                gene_name: BPHL
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
BPIL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.544131e-02	ci left: 6.945411e-01	ci right 7.125402e-01	k: 7036	n:10000
Cons ci ratio: 1.128739e-02	ci left: 9.181162e-01	ci right 9.286356e-01	k: 9235	n:10000
KS ci ratio: 1.046689e-01	ci left: 1.165255e-01	ci right 1.294950e-01	k: 1229	n:10000
BPIL3   10000 perm   2 sec   (6443 perm/sec)   p_kst 1.229000e-01   p_cons 9.235000e-01   p_joint 7.036000e-01

Joint ci ratio: 4.781833e-02	ci left: 2.454488e-01	ci right 2.575236e-01	k: 5029	n:20000
Cons ci ratio: 7.962651e-03	ci left: 9.200360e-01	ci right 9.274403e-01	k: 18476	n:20000
KS ci ratio: 7.384239e-02	ci left: 1.189210e-01	ci right 1.280888e-01	k: 2469	n:20000
BPIL3   20000 perm   4 sec   (5615 perm/sec)   p_kst 1.234500e-01   p_cons 9.238000e-01   p_joint 2.514500e-01

Outputting figure to mutsig2_images.part000000000017/BPIL3.2_1421_20000_0.12345_0.9238_0.25145.png
                gene_name: BPIL3
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 76 percent done.
BRD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.161915e-02	ci left: 9.137886e-01	ci right 9.245657e-01	k: 9193	n:10000
Cons ci ratio: 9.979928e-03	ci left: 9.343371e-01	ci right 9.438051e-01	k: 9392	n:10000
KS ci ratio: 2.136983e-02	ci left: 7.625349e-01	ci right 7.791070e-01	k: 7709	n:10000
BRD1   10000 perm   2 sec   (5400 perm/sec)   p_kst 7.709000e-01   p_cons 9.392000e-01   p_joint 9.193000e-01

Outputting figure to mutsig2_images.part000000000017/BRD1.2_3225_10000_0.7709_0.9392_0.9193.png
                gene_name: BRD1
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 78 percent done.
BRD7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.422405e-02	ci left: 5.576212e-01	ci right 5.771396e-01	k: 5674	n:10000
Cons ci ratio: 6.413009e-02	ci left: 2.631968e-01	ci right 2.807362e-01	k: 2719	n:10000
KS ci ratio: 1.986367e-02	ci left: 7.876620e-01	ci right 8.035654e-01	k: 7957	n:10000
BRD7   10000 perm   2 sec   (6309 perm/sec)   p_kst 7.957000e-01   p_cons 2.719000e-01   p_joint 5.674000e-01

Outputting figure to mutsig2_images.part000000000017/BRD7.2_2027_10000_0.7957_0.2719_0.5674.png
                gene_name: BRD7
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 80 percent done.
BRD9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.518912e-02	ci left: 8.627401e-01	ci right 8.760439e-01	k: 8695	n:10000
Cons ci ratio: 1.786148e-02	ci left: 8.205599e-01	ci right 8.354485e-01	k: 8281	n:10000
KS ci ratio: 1.877649e-02	ci left: 8.056233e-01	ci right 8.209937e-01	k: 8134	n:10000
BRD9   10000 perm   2 sec   (6446 perm/sec)   p_kst 8.134000e-01   p_cons 8.281000e-01   p_joint 8.695000e-01

Outputting figure to mutsig2_images.part000000000017/BRD9.2_1858_10000_0.8134_0.8281_0.8695.png
                gene_name: BRD9
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.88 

Current progress: 82 percent done.
BRSK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.918053e-02	ci left: 1.283593e-01	ci right 1.418540e-01	k: 1350	n:10000
Cons ci ratio: 2.664142e-03	ci left: 9.939832e-01	ci right 9.967158e-01	k: 9955	n:10000
KS ci ratio: 2.743868e-01	ci left: 1.725330e-02	ci right 2.283124e-02	k: 199	n:10000
BRSK2   10000 perm   2 sec   (6217 perm/sec)   p_kst 1.990000e-02   p_cons 9.955000e-01   p_joint 1.350000e-01

Joint ci ratio: 7.397914e-02	ci left: 1.185274e-01	ci right 1.276825e-01	k: 2461	n:20000
Cons ci ratio: 2.089158e-03	ci left: 9.932656e-01	ci right 9.953868e-01	k: 19888	n:20000
KS ci ratio: 1.908840e-01	ci left: 1.867638e-02	ci right 2.266469e-02	k: 412	n:20000
BRSK2   20000 perm   4 sec   (5456 perm/sec)   p_kst 2.060000e-02   p_cons 9.944000e-01   p_joint 1.230500e-01

Joint ci ratio: 6.117156e-02	ci left: 1.167048e-01	ci right 1.241022e-01	k: 3611	n:30000
Cons ci ratio: 1.748360e-03	ci left: 9.931671e-01	ci right 9.949352e-01	k: 29823	n:30000
KS ci ratio: 1.584224e-01	ci left: 1.841369e-02	ci right 2.161355e-02	k: 599	n:30000
BRSK2   30000 perm   6 sec   (5182 perm/sec)   p_kst 1.996667e-02   p_cons 9.941000e-01   p_joint 1.203667e-01

Joint ci ratio: 6.416192e-02	ci left: 8.260495e-02	ci right 8.810542e-02	k: 3413	n:40000
Cons ci ratio: 1.535403e-03	ci left: 9.931140e-01	ci right 9.946630e-01	k: 39757	n:40000
KS ci ratio: 1.365035e-01	ci left: 1.881957e-02	ci right 2.160069e-02	k: 807	n:40000
BRSK2   40000 perm   8 sec   (4991 perm/sec)   p_kst 2.017500e-02   p_cons 9.939250e-01   p_joint 8.532500e-02

Joint ci ratio: 5.757656e-02	ci left: 8.239204e-02	ci right 8.729628e-02	k: 4241	n:50000
Cons ci ratio: 1.355084e-03	ci left: 9.933681e-01	ci right 9.947336e-01	k: 49704	n:50000
KS ci ratio: 1.209369e-01	ci left: 1.933406e-02	ci right 2.184204e-02	k: 1028	n:50000
BRSK2   50000 perm   10 sec   (4836 perm/sec)   p_kst 2.056000e-02   p_cons 9.940800e-01   p_joint 8.482000e-02

Joint ci ratio: 5.274936e-02	ci left: 8.205576e-02	ci right 8.651788e-02	k: 5056	n:60000
Cons ci ratio: 1.229322e-03	ci left: 9.935069e-01	ci right 9.947445e-01	k: 59649	n:60000
KS ci ratio: 1.109424e-01	ci left: 1.925135e-02	ci right 2.152870e-02	k: 1222	n:60000
BRSK2   60000 perm   13 sec   (4712 perm/sec)   p_kst 2.036667e-02   p_cons 9.941500e-01   p_joint 8.426667e-02

Joint ci ratio: 4.885832e-02	ci left: 8.215302e-02	ci right 8.628152e-02	k: 5894	n:70000
Cons ci ratio: 1.124585e-03	ci left: 9.936992e-01	ci right 9.948307e-01	k: 69600	n:70000
KS ci ratio: 1.032994e-01	ci left: 1.911490e-02	ci right 2.121085e-02	k: 1410	n:70000
BRSK2   70000 perm   15 sec   (4596 perm/sec)   p_kst 2.014286e-02   p_cons 9.942857e-01   p_joint 8.420000e-02

Joint ci ratio: 4.555582e-02	ci left: 8.277941e-02	ci right 8.665076e-02	k: 6776	n:80000
Cons ci ratio: 1.040018e-03	ci left: 9.938714e-01	ci right 9.949173e-01	k: 79553	n:80000
KS ci ratio: 9.562119e-02	ci left: 1.959027e-02	ci right 2.156972e-02	k: 1645	n:80000
BRSK2   80000 perm   18 sec   (4490 perm/sec)   p_kst 2.056250e-02   p_cons 9.944125e-01   p_joint 8.470000e-02

Outputting figure to mutsig2_images.part000000000017/BRSK2.2_2087_80000_0.020563_0.99441_0.0847.png
                gene_name: BRSK2
               theta_stop: 0.096 
                    nperm: 80000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.022 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.085 
     ci_joint_bounds_left: 0.083 
    ci_joint_bounds_right: 0.087 

Current progress: 84 percent done.
BSDC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.785907e-02	ci left: 2.416357e-01	ci right 2.587100e-01	k: 2501	n:10000
Cons ci ratio: 3.770962e-02	ci left: 5.094531e-01	ci right 5.291357e-01	k: 5193	n:10000
KS ci ratio: 6.178537e-02	ci left: 2.780479e-01	ci right 2.958764e-01	k: 2869	n:10000
BSDC1   10000 perm   2 sec   (6398 perm/sec)   p_kst 2.869000e-01   p_cons 5.193000e-01   p_joint 2.501000e-01

Outputting figure to mutsig2_images.part000000000017/BSDC1.2_1388_10000_0.2869_0.5193_0.2501.png
                gene_name: BSDC1
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 87 percent done.
BSX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.689324e-02	ci left: 8.361272e-01	ci right 8.504722e-01	k: 8434	n:10000
KS ci ratio: 2.194382e-02	ci left: 7.529207e-01	ci right 7.697268e-01	k: 7614	n:10000
BSX   10000 perm   1 sec   (6899 perm/sec)   p_kst 7.614000e-01   p_cons 8.434000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000017/BSX.2_713_10000_0.7614_0.8434_1.png
                gene_name: BSX
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
BTAF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.084306e-02	ci left: 7.713448e-01	ci right 7.876920e-01	k: 7796	n:10000
Cons ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
KS ci ratio: 6.017928e-02	ci left: 2.888472e-01	ci right 3.068707e-01	k: 2978	n:10000
BTAF1   10000 perm   2 sec   (4236 perm/sec)   p_kst 2.978000e-01   p_cons 1   p_joint 7.796000e-01

Outputting figure to mutsig2_images.part000000000017/BTAF1.2_5702_10000_0.2978_1_0.7796.png
                gene_name: BTAF1
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 1 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 91 percent done.
BTBD17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.571011e-01	ci left: 5.637697e-03	ci right 9.058734e-03	k: 72	n:10000
Cons ci ratio: 1.851468e-01	ci left: 3.891660e-02	ci right 4.695241e-02	k: 428	n:10000
KS ci ratio: 8.756181e-01	ci left: 1.144300e-03	ci right 2.965502e-03	k: 19	n:10000
BTBD17   10000 perm   1 sec   (6695 perm/sec)   p_kst 1.900000e-03   p_cons 4.280000e-02   p_joint 7.200000e-03

Joint ci ratio: 5.971366e-01	ci left: 1.513902e-03	ci right 2.837541e-03	k: 42	n:20000
Cons ci ratio: 1.329584e-01	ci left: 3.887454e-02	ci right 4.445971e-02	k: 832	n:20000
KS ci ratio: 7.034894e-01	ci left: 1.012265e-03	ci right 2.140657e-03	k: 30	n:20000
BTBD17   20000 perm   3 sec   (5759 perm/sec)   p_kst 1.500000e-03   p_cons 4.160000e-02   p_joint 2.100000e-03

Joint ci ratio: 2.574802e-01	ci left: 6.679709e-03	ci right 8.684070e-03	k: 229	n:30000
Cons ci ratio: 1.008634e-01	ci left: 4.551066e-02	ci right 5.037737e-02	k: 1437	n:30000
KS ci ratio: 5.595332e-01	ci left: 1.179942e-03	ci right 2.120815e-03	k: 48	n:30000
BTBD17   30000 perm   6 sec   (5450 perm/sec)   p_kst 1.600000e-03   p_cons 4.790000e-02   p_joint 7.633333e-03

Joint ci ratio: 1.729844e-01	ci left: 1.157778e-02	ci right 1.379381e-02	k: 506	n:40000
Cons ci ratio: 8.714396e-02	ci left: 4.604791e-02	ci right 5.026800e-02	k: 1925	n:40000
KS ci ratio: 4.784970e-01	ci left: 1.276333e-03	ci right 2.098733e-03	k: 66	n:40000
BTBD17   40000 perm   8 sec   (5247 perm/sec)   p_kst 1.650000e-03   p_cons 4.812500e-02   p_joint 1.265000e-02

Joint ci ratio: 1.466954e-01	ci left: 1.304628e-02	ci right 1.513069e-02	k: 703	n:50000
Cons ci ratio: 7.778301e-02	ci left: 4.645664e-02	ci right 5.023602e-02	k: 2416	n:50000
KS ci ratio: 4.248179e-01	ci left: 1.340248e-03	ci right 2.079538e-03	k: 84	n:50000
BTBD17   50000 perm   10 sec   (5099 perm/sec)   p_kst 1.680000e-03   p_cons 4.832000e-02   p_joint 1.406000e-02

Joint ci ratio: 1.369723e-01	ci left: 1.254355e-02	ci right 1.440395e-02	k: 807	n:60000
Cons ci ratio: 7.141309e-02	ci left: 4.610651e-02	ci right 4.953740e-02	k: 2868	n:60000
KS ci ratio: 3.916699e-01	ci left: 1.341235e-03	ci right 2.008455e-03	k: 99	n:60000
BTBD17   60000 perm   12 sec   (4961 perm/sec)   p_kst 1.650000e-03   p_cons 4.780000e-02   p_joint 1.345000e-02

Joint ci ratio: 1.230718e-01	ci left: 1.340582e-02	ci right 1.517763e-02	k: 999	n:70000
Cons ci ratio: 6.604497e-02	ci left: 4.632962e-02	ci right 4.950799e-02	k: 3353	n:70000
KS ci ratio: 3.822631e-01	ci left: 1.214093e-03	ci right 1.799908e-03	k: 104	n:70000
BTBD17   70000 perm   14 sec   (4832 perm/sec)   p_kst 1.485714e-03   p_cons 4.790000e-02   p_joint 1.427143e-02

Joint ci ratio: 8.677350e-02	ci left: 2.379454e-02	ci right 2.596510e-02	k: 1989	n:80000
Cons ci ratio: 6.162043e-02	ci left: 4.666435e-02	ci right 4.964353e-02	k: 3851	n:80000
KS ci ratio: 3.621368e-01	ci left: 1.198307e-03	ci right 1.738885e-03	k: 116	n:80000
BTBD17   80000 perm   17 sec   (4724 perm/sec)   p_kst 1.450000e-03   p_cons 4.813750e-02   p_joint 2.486250e-02

Joint ci ratio: 1.226514e-01	ci left: 1.053348e-02	ci right 1.192052e-02	k: 1009	n:90000
Cons ci ratio: 5.831225e-02	ci left: 4.641522e-02	ci right 4.921401e-02	k: 4302	n:90000
KS ci ratio: 3.396540e-01	ci left: 1.227288e-03	ci right 1.739042e-03	k: 132	n:90000
BTBD17   90000 perm   20 sec   (4608 perm/sec)   p_kst 1.466667e-03   p_cons 4.780000e-02   p_joint 1.121111e-02

Joint ci ratio: 1.224153e-01	ci left: 9.528294e-03	ci right 1.078036e-02	k: 1014	n:100000
Cons ci ratio: 5.521149e-02	ci left: 4.666348e-02	ci right 4.932282e-02	k: 4798	n:100000
KS ci ratio: 3.241830e-01	ci left: 1.223731e-03	ci right 1.705930e-03	k: 145	n:100000
BTBD17   100000 perm   22 sec   (4519 perm/sec)   p_kst 1.450000e-03   p_cons 4.798000e-02   p_joint 1.014000e-02

Joint ci ratio: 1.092735e-01	ci left: 1.093136e-02	ci right 1.220368e-02	k: 1271	n:110000
Cons ci ratio: 5.266255e-02	ci left: 4.669027e-02	ci right 4.922454e-02	k: 5274	n:110000
KS ci ratio: 3.068091e-01	ci left: 1.254803e-03	ci right 1.717575e-03	k: 162	n:110000
BTBD17   110000 perm   25 sec   (4427 perm/sec)   p_kst 1.472727e-03   p_cons 4.794545e-02   p_joint 1.155455e-02

Joint ci ratio: 1.153430e-01	ci left: 8.983156e-03	ci right 1.009074e-02	k: 1143	n:120000
Cons ci ratio: 5.066401e-02	ci left: 4.631154e-02	ci right 4.872706e-02	k: 5701	n:120000
KS ci ratio: 2.927747e-01	ci left: 1.273549e-03	ci right 1.717769e-03	k: 178	n:120000
BTBD17   120000 perm   28 sec   (4343 perm/sec)   p_kst 1.483333e-03   p_cons 4.750833e-02   p_joint 9.525000e-03

Joint ci ratio: 1.098086e-01	ci left: 9.174335e-03	ci right 1.024770e-02	k: 1261	n:130000
Cons ci ratio: 4.862341e-02	ci left: 4.645644e-02	ci right 4.877918e-02	k: 6189	n:130000
KS ci ratio: 2.769715e-01	ci left: 1.325595e-03	ci right 1.758667e-03	k: 199	n:130000
BTBD17   130000 perm   31 sec   (4260 perm/sec)   p_kst 1.530769e-03   p_cons 4.760769e-02   p_joint 9.700000e-03

Joint ci ratio: 1.127216e-01	ci left: 8.081288e-03	ci right 9.053516e-03	k: 1198	n:140000
Cons ci ratio: 5.162308e-02	ci left: 3.853505e-02	ci right 4.058408e-02	k: 5537	n:140000
KS ci ratio: 2.677598e-01	ci left: 1.324082e-03	ci right 1.739859e-03	k: 213	n:140000
BTBD17   140000 perm   33 sec   (4180 perm/sec)   p_kst 1.521429e-03   p_cons 3.955000e-02   p_joint 8.557143e-03

Joint ci ratio: 1.082068e-01	ci left: 8.203779e-03	ci right 9.148693e-03	k: 1300	n:150000
Cons ci ratio: 4.989704e-02	ci left: 3.853304e-02	ci right 4.051148e-02	k: 5927	n:150000
KS ci ratio: 2.582780e-01	ci left: 1.335447e-03	ci right 1.737549e-03	k: 229	n:150000
BTBD17   150000 perm   37 sec   (4105 perm/sec)   p_kst 1.526667e-03   p_cons 3.951333e-02   p_joint 8.666667e-03

Joint ci ratio: 1.157368e-01	ci left: 6.706561e-03	ci right 7.536450e-03	k: 1138	n:160000
Cons ci ratio: 4.824196e-02	ci left: 3.867437e-02	ci right 4.059236e-02	k: 6340	n:160000
KS ci ratio: 2.502470e-01	ci left: 1.339759e-03	ci right 1.728662e-03	k: 244	n:160000
BTBD17   160000 perm   40 sec   (4032 perm/sec)   p_kst 1.525000e-03   p_cons 3.962500e-02   p_joint 7.112500e-03

Joint ci ratio: 1.132843e-01	ci left: 6.597730e-03	ci right 7.395693e-03	k: 1188	n:170000
Cons ci ratio: 4.675216e-02	ci left: 3.878257e-02	ci right 4.064493e-02	k: 6750	n:170000
KS ci ratio: 2.415298e-01	ci left: 1.360312e-03	ci right 1.739366e-03	k: 262	n:170000
BTBD17   170000 perm   43 sec   (3963 perm/sec)   p_kst 1.541176e-03   p_cons 3.970588e-02   p_joint 6.988235e-03

Joint ci ratio: 1.091338e-01	ci left: 6.728110e-03	ci right 7.510113e-03	k: 1280	n:180000
Cons ci ratio: 4.530349e-02	ci left: 3.902793e-02	ci right 4.084248e-02	k: 7187	n:180000
KS ci ratio: 2.340819e-01	ci left: 1.373558e-03	ci right 1.742794e-03	k: 279	n:180000
BTBD17   180000 perm   46 sec   (3896 perm/sec)   p_kst 1.550000e-03   p_cons 3.992778e-02   p_joint 7.111111e-03

Joint ci ratio: 1.128498e-01	ci left: 5.954263e-03	ci right 6.671451e-03	k: 1198	n:190000
Cons ci ratio: 4.408711e-02	ci left: 3.906599e-02	ci right 4.083230e-02	k: 7589	n:190000
KS ci ratio: 2.265204e-01	ci left: 1.395500e-03	ci right 1.756823e-03	k: 298	n:190000
BTBD17   190000 perm   50 sec   (3832 perm/sec)   p_kst 1.568421e-03   p_cons 3.994211e-02   p_joint 6.305263e-03

Joint ci ratio: 1.106608e-01	ci left: 5.889830e-03	ci right 6.584598e-03	k: 1246	n:200000
Cons ci ratio: 4.298334e-02	ci left: 3.906618e-02	ci right 4.078718e-02	k: 7984	n:200000
KS ci ratio: 2.210441e-01	ci left: 1.396521e-03	ci right 1.748179e-03	k: 313	n:200000
BTBD17   200000 perm   53 sec   (3769 perm/sec)   p_kst 1.565000e-03   p_cons 3.992000e-02   p_joint 6.230000e-03

Joint ci ratio: 1.046423e-01	ci left: 6.290593e-03	ci right 6.989797e-03	k: 1393	n:210000
Cons ci ratio: 4.189608e-02	ci left: 3.918000e-02	ci right 4.086130e-02	k: 8403	n:210000
KS ci ratio: 2.136819e-01	ci left: 1.429083e-03	ci right 1.775384e-03	k: 335	n:210000
BTBD17   210000 perm   57 sec   (3706 perm/sec)   p_kst 1.595238e-03   p_cons 4.001429e-02   p_joint 6.633333e-03

Joint ci ratio: 1.019690e-01	ci left: 6.332337e-03	ci right 7.017122e-03	k: 1467	n:220000
Cons ci ratio: 4.088977e-02	ci left: 3.927946e-02	ci right 4.092359e-02	k: 8821	n:220000
KS ci ratio: 2.075909e-01	ci left: 1.450240e-03	ci right 1.790380e-03	k: 355	n:220000
BTBD17   220000 perm   60 sec   (3648 perm/sec)   p_kst 1.613636e-03   p_cons 4.009545e-02   p_joint 6.668182e-03

Joint ci ratio: 9.668938e-02	ci left: 6.752426e-03	ci right 7.442692e-03	k: 1631	n:230000
Cons ci ratio: 4.003396e-02	ci left: 3.921570e-02	ci right 4.082201e-02	k: 9203	n:230000
KS ci ratio: 2.025331e-01	ci left: 1.461430e-03	ci right 1.794810e-03	k: 373	n:230000
BTBD17   230000 perm   64 sec   (3590 perm/sec)   p_kst 1.621739e-03   p_cons 4.001304e-02   p_joint 7.091304e-03

Joint ci ratio: 1.189023e-01	ci left: 4.240184e-03	ci right 4.780223e-03	k: 1081	n:240000
Cons ci ratio: 3.914898e-02	ci left: 3.931442e-02	ci right 4.088838e-02	k: 9623	n:240000
KS ci ratio: 1.996210e-01	ci left: 1.444062e-03	ci right 1.768166e-03	k: 384	n:240000
BTBD17   240000 perm   68 sec   (3535 perm/sec)   p_kst 1.600000e-03   p_cons 4.009583e-02   p_joint 4.504167e-03

Joint ci ratio: 1.167648e-01	ci left: 4.225859e-03	ci right 4.753730e-03	k: 1121	n:250000
Cons ci ratio: 3.830431e-02	ci left: 3.943731e-02	ci right 4.098137e-02	k: 10051	n:250000
KS ci ratio: 1.960884e-01	ci left: 1.439525e-03	ci right 1.756210e-03	k: 398	n:250000
BTBD17   250000 perm   72 sec   (3483 perm/sec)   p_kst 1.592000e-03   p_cons 4.020400e-02   p_joint 4.484000e-03

Joint ci ratio: 1.142458e-01	ci left: 4.250080e-03	ci right 4.768752e-03	k: 1171	n:260000
Cons ci ratio: 3.759060e-02	ci left: 3.939100e-02	ci right 4.090389e-02	k: 10437	n:260000
KS ci ratio: 1.925037e-01	ci left: 1.439044e-03	ci right 1.749159e-03	k: 413	n:260000
BTBD17   260000 perm   76 sec   (3430 perm/sec)   p_kst 1.588462e-03   p_cons 4.014231e-02   p_joint 4.503846e-03

Joint ci ratio: 9.211238e-02	ci left: 6.355931e-03	ci right 6.973248e-03	k: 1798	n:270000
Cons ci ratio: 3.689405e-02	ci left: 3.939242e-02	ci right 4.087673e-02	k: 10835	n:270000
KS ci ratio: 1.891086e-01	ci left: 1.438648e-03	ci right 1.742582e-03	k: 428	n:270000
BTBD17   270000 perm   80 sec   (3379 perm/sec)   p_kst 1.585185e-03   p_cons 4.012963e-02   p_joint 6.659259e-03

Joint ci ratio: 9.086113e-02	ci left: 6.303412e-03	ci right 6.906869e-03	k: 1848	n:280000
Cons ci ratio: 3.622812e-02	ci left: 3.940814e-02	ci right 4.086568e-02	k: 11237	n:280000
KS ci ratio: 1.844365e-01	ci left: 1.462168e-03	ci right 1.762585e-03	k: 450	n:280000
BTBD17   280000 perm   84 sec   (3330 perm/sec)   p_kst 1.607143e-03   p_cons 4.013214e-02   p_joint 6.600000e-03

Joint ci ratio: 8.656983e-02	ci left: 6.716641e-03	ci right 7.327756e-03	k: 2035	n:290000
Cons ci ratio: 3.557312e-02	ci left: 3.947429e-02	ci right 4.090733e-02	k: 11654	n:290000
KS ci ratio: 1.808620e-01	ci left: 1.470980e-03	ci right 1.766709e-03	k: 468	n:290000
BTBD17   290000 perm   88 sec   (3283 perm/sec)   p_kst 1.613793e-03   p_cons 4.018621e-02   p_joint 7.017241e-03

Joint ci ratio: 8.445515e-02	ci left: 6.828761e-03	ci right 7.434152e-03	k: 2138	n:300000
Cons ci ratio: 3.497959e-02	ci left: 3.947674e-02	ci right 4.088549e-02	k: 12053	n:300000
KS ci ratio: 1.780377e-01	ci left: 1.469701e-03	ci right 1.760062e-03	k: 483	n:300000
BTBD17   300000 perm   93 sec   (3237 perm/sec)   p_kst 1.610000e-03   p_cons 4.017667e-02   p_joint 7.126667e-03

Joint ci ratio: 8.327747e-02	ci left: 6.801122e-03	ci right 7.395246e-03	k: 2199	n:310000
Cons ci ratio: 3.442777e-02	ci left: 3.945044e-02	ci right 4.083560e-02	k: 12443	n:310000
KS ci ratio: 1.748162e-01	ci left: 1.477793e-03	ci right 1.763912e-03	k: 501	n:310000
BTBD17   310000 perm   97 sec   (3190 perm/sec)   p_kst 1.616129e-03   p_cons 4.013871e-02   p_joint 7.093548e-03

Joint ci ratio: 8.249751e-02	ci left: 6.717104e-03	ci right 7.298128e-03	k: 2241	n:320000
Cons ci ratio: 3.385595e-02	ci left: 3.952823e-02	ci right 4.089262e-02	k: 12866	n:320000
KS ci ratio: 1.719290e-01	ci left: 1.482432e-03	ci right 1.764217e-03	k: 518	n:320000
BTBD17   320000 perm   102 sec   (3148 perm/sec)   p_kst 1.618750e-03   p_cons 4.020625e-02   p_joint 7.003125e-03

Joint ci ratio: 8.006177e-02	ci left: 6.923267e-03	ci right 7.503619e-03	k: 2379	n:330000
Cons ci ratio: 3.334047e-02	ci left: 3.953535e-02	ci right 4.087880e-02	k: 13267	n:330000
KS ci ratio: 1.690225e-01	ci left: 1.489728e-03	ci right 1.767626e-03	k: 536	n:330000
BTBD17   330000 perm   106 sec   (3107 perm/sec)   p_kst 1.624242e-03   p_cons 4.020303e-02   p_joint 7.209091e-03

Joint ci ratio: 7.874827e-02	ci left: 6.950267e-03	ci right 7.522885e-03	k: 2459	n:340000
Cons ci ratio: 3.287290e-02	ci left: 3.948384e-02	ci right 4.080637e-02	k: 13648	n:340000
KS ci ratio: 1.659594e-01	ci left: 1.502272e-03	ci right 1.776923e-03	k: 556	n:340000
BTBD17   340000 perm   111 sec   (3066 perm/sec)   p_kst 1.635294e-03   p_cons 4.014118e-02   p_joint 7.232353e-03

Joint ci ratio: 7.752813e-02	ci left: 6.970193e-03	ci right 7.535154e-03	k: 2537	n:350000
Cons ci ratio: 3.242688e-02	ci left: 3.942972e-02	ci right 4.073219e-02	k: 14027	n:350000
KS ci ratio: 1.627746e-01	ci left: 1.519622e-03	ci right 1.791592e-03	k: 578	n:350000
BTBD17   350000 perm   116 sec   (3027 perm/sec)   p_kst 1.651429e-03   p_cons 4.007714e-02   p_joint 7.248571e-03

Joint ci ratio: 7.651043e-02	ci left: 6.961826e-03	ci right 7.518372e-03	k: 2605	n:360000
Cons ci ratio: 3.197541e-02	ci left: 3.943386e-02	ci right 4.071800e-02	k: 14426	n:360000
KS ci ratio: 1.609783e-01	ci left: 1.512058e-03	ci right 1.779399e-03	k: 591	n:360000
BTBD17   360000 perm   120 sec   (2988 perm/sec)   p_kst 1.641667e-03   p_cons 4.007222e-02   p_joint 7.236111e-03

Joint ci ratio: 6.736918e-02	ci left: 8.761976e-03	ci right 9.375479e-03	k: 3354	n:370000
Cons ci ratio: 3.155893e-02	ci left: 3.939766e-02	ci right 4.066361e-02	k: 14810	n:370000
KS ci ratio: 1.580668e-01	ci left: 1.528279e-03	ci right 1.793137e-03	k: 613	n:370000
BTBD17   370000 perm   125 sec   (2950 perm/sec)   p_kst 1.656757e-03   p_cons 4.002703e-02   p_joint 9.064865e-03

Joint ci ratio: 6.645422e-02	ci left: 8.772041e-03	ci right 9.377586e-03	k: 3447	n:380000
Cons ci ratio: 3.110503e-02	ci left: 3.949407e-02	ci right 4.074453e-02	k: 15244	n:380000
KS ci ratio: 1.555530e-01	ci left: 1.538628e-03	ci right 1.800644e-03	k: 633	n:380000
BTBD17   380000 perm   130 sec   (2914 perm/sec)   p_kst 1.665789e-03   p_cons 4.011579e-02   p_joint 9.071053e-03

Joint ci ratio: 6.553821e-02	ci left: 8.791733e-03	ci right 9.389954e-03	k: 3544	n:390000
Cons ci ratio: 3.070998e-02	ci left: 3.948639e-02	ci right 4.072045e-02	k: 15639	n:390000
KS ci ratio: 1.533905e-01	ci left: 1.543546e-03	ci right 1.802410e-03	k: 651	n:390000
BTBD17   390000 perm   136 sec   (2877 perm/sec)   p_kst 1.669231e-03   p_cons 4.010000e-02   p_joint 9.087179e-03

Joint ci ratio: 7.151659e-02	ci left: 7.188294e-03	ci right 7.723879e-03	k: 2981	n:400000
Cons ci ratio: 3.034342e-02	ci left: 3.944445e-02	ci right 4.066223e-02	k: 16020	n:400000
KS ci ratio: 1.510900e-01	ci left: 1.553053e-03	ci right 1.809252e-03	k: 671	n:400000
BTBD17   400000 perm   141 sec   (2841 perm/sec)   p_kst 1.677500e-03   p_cons 4.005000e-02   p_joint 7.452500e-03

Joint ci ratio: 6.377994e-02	ci left: 8.837994e-03	ci right 9.422633e-03	k: 3742	n:410000
Cons ci ratio: 2.996589e-02	ci left: 3.946517e-02	ci right 4.066817e-02	k: 16426	n:410000
KS ci ratio: 1.493230e-01	ci left: 1.552732e-03	ci right 1.805614e-03	k: 687	n:410000
BTBD17   410000 perm   146 sec   (2806 perm/sec)   p_kst 1.675610e-03   p_cons 4.006341e-02   p_joint 9.126829e-03

Joint ci ratio: 6.314329e-02	ci left: 8.805642e-03	ci right 9.382114e-03	k: 3818	n:420000
Cons ci ratio: 2.961311e-02	ci left: 3.945663e-02	ci right 4.064497e-02	k: 16820	n:420000
KS ci ratio: 1.474069e-01	ci left: 1.557028e-03	ci right 1.807070e-03	k: 705	n:420000
BTBD17   420000 perm   152 sec   (2772 perm/sec)   p_kst 1.678571e-03   p_cons 4.004762e-02   p_joint 9.090476e-03

Joint ci ratio: 6.246870e-02	ci left: 8.790849e-03	ci right 9.359982e-03	k: 3901	n:430000
Cons ci ratio: 2.928668e-02	ci left: 3.941161e-02	ci right 4.058529e-02	k: 17198	n:430000
KS ci ratio: 1.462728e-01	ci left: 1.545459e-03	ci right 1.791566e-03	k: 716	n:430000
BTBD17   430000 perm   157 sec   (2740 perm/sec)   p_kst 1.665116e-03   p_cons 3.999535e-02   p_joint 9.072093e-03

Joint ci ratio: 6.906568e-02	ci left: 7.017074e-03	ci right 7.521266e-03	k: 3197	n:440000
Cons ci ratio: 2.894338e-02	ci left: 3.944094e-02	ci right 4.060149e-02	k: 17608	n:440000
KS ci ratio: 1.445689e-01	ci left: 1.547566e-03	ci right 1.790890e-03	k: 733	n:440000
BTBD17   440000 perm   162 sec   (2708 perm/sec)   p_kst 1.665909e-03   p_cons 4.001818e-02   p_joint 7.265909e-03

Joint ci ratio: 6.832220e-02	ci left: 7.014022e-03	ci right 7.512354e-03	k: 3267	n:450000
Cons ci ratio: 2.864169e-02	ci left: 3.938958e-02	ci right 4.053635e-02	k: 17982	n:450000
KS ci ratio: 1.433060e-01	ci left: 1.541024e-03	ci right 1.781022e-03	k: 746	n:450000
BTBD17   450000 perm   168 sec   (2678 perm/sec)   p_kst 1.657778e-03   p_cons 3.996000e-02   p_joint 7.260000e-03

Joint ci ratio: 6.751060e-02	ci left: 7.030368e-03	ci right 7.523695e-03	k: 3346	n:460000
Cons ci ratio: 2.833639e-02	ci left: 3.937507e-02	ci right 4.050899e-02	k: 18372	n:460000
KS ci ratio: 1.411486e-01	ci left: 1.555745e-03	ci right 1.794081e-03	k: 769	n:460000
BTBD17   460000 perm   174 sec   (2647 perm/sec)   p_kst 1.671739e-03   p_cons 3.993913e-02   p_joint 7.273913e-03

Joint ci ratio: 6.675671e-02	ci left: 7.039774e-03	ci right 7.528032e-03	k: 3422	n:470000
Cons ci ratio: 2.803831e-02	ci left: 3.936758e-02	ci right 4.048917e-02	k: 18765	n:470000
KS ci ratio: 1.396157e-01	ci left: 1.557544e-03	ci right 1.793348e-03	k: 786	n:470000
BTBD17   470000 perm   180 sec   (2616 perm/sec)   p_kst 1.672340e-03   p_cons 3.992553e-02   p_joint 7.280851e-03

Joint ci ratio: 6.611322e-02	ci left: 7.030375e-03	ci right 7.513101e-03	k: 3489	n:480000
Cons ci ratio: 2.771931e-02	ci left: 3.944324e-02	ci right 4.055399e-02	k: 19198	n:480000
KS ci ratio: 1.383906e-01	ci left: 1.553247e-03	ci right 1.786168e-03	k: 800	n:480000
BTBD17   480000 perm   186 sec   (2585 perm/sec)   p_kst 1.666667e-03   p_cons 3.999583e-02   p_joint 7.268750e-03

Joint ci ratio: 6.534012e-02	ci left: 7.053505e-03	ci right 7.531941e-03	k: 3572	n:490000
Cons ci ratio: 2.742042e-02	ci left: 3.948952e-02	ci right 4.058940e-02	k: 19618	n:490000
KS ci ratio: 1.371130e-01	ci left: 1.551105e-03	ci right 1.781382e-03	k: 815	n:490000
BTBD17   490000 perm   192 sec   (2557 perm/sec)   p_kst 1.663265e-03   p_cons 4.003673e-02   p_joint 7.289796e-03

Joint ci ratio: 6.469163e-02	ci left: 7.054094e-03	ci right 7.527643e-03	k: 3644	n:500000
Cons ci ratio: 2.713522e-02	ci left: 3.952209e-02	ci right 4.061125e-02	k: 20032	n:500000
KS ci ratio: 1.352197e-01	ci left: 1.564517e-03	ci right 1.793320e-03	k: 838	n:500000
BTBD17   500000 perm   198 sec   (2531 perm/sec)   p_kst 1.676000e-03   p_cons 4.006400e-02   p_joint 7.288000e-03

Joint ci ratio: 6.399273e-02	ci left: 7.070119e-03	ci right 7.539426e-03	k: 3724	n:510000
Cons ci ratio: 2.688546e-02	ci left: 3.947746e-02	ci right 4.055522e-02	k: 20407	n:510000
KS ci ratio: 1.334803e-01	ci left: 1.575528e-03	ci right 1.802742e-03	k: 860	n:510000
BTBD17   510000 perm   204 sec   (2504 perm/sec)   p_kst 1.686275e-03   p_cons 4.001373e-02   p_joint 7.301961e-03

Joint ci ratio: 6.335796e-02	ci left: 7.076090e-03	ci right 7.540963e-03	k: 3799	n:520000
Cons ci ratio: 2.660583e-02	ci left: 3.953969e-02	ci right 4.060775e-02	k: 20837	n:520000
KS ci ratio: 1.323328e-01	ci left: 1.573116e-03	ci right 1.797879e-03	k: 875	n:520000
BTBD17   520000 perm   210 sec   (2477 perm/sec)   p_kst 1.682692e-03   p_cons 4.007115e-02   p_joint 7.305769e-03

Joint ci ratio: 6.272540e-02	ci left: 7.085573e-03	ci right 7.546253e-03	k: 3876	n:530000
Cons ci ratio: 2.394374e-02	ci left: 4.756110e-02	ci right 4.871555e-02	k: 25512	n:530000
KS ci ratio: 1.312144e-01	ci left: 1.570804e-03	ci right 1.793191e-03	k: 890	n:530000
BTBD17   530000 perm   216 sec   (2449 perm/sec)   p_kst 1.679245e-03   p_cons 4.813585e-02   p_joint 7.313208e-03

Joint ci ratio: 6.216688e-02	ci left: 7.081963e-03	ci right 7.538161e-03	k: 3946	n:540000
Cons ci ratio: 2.371448e-02	ci left: 4.759155e-02	ci right 4.873553e-02	k: 26007	n:540000
KS ci ratio: 1.301239e-01	ci left: 1.568584e-03	ci right 1.788669e-03	k: 905	n:540000
BTBD17   540000 perm   223 sec   (2423 perm/sec)   p_kst 1.675926e-03   p_cons 4.816111e-02   p_joint 7.307407e-03

Joint ci ratio: 6.161529e-02	ci left: 7.080293e-03	ci right 7.532193e-03	k: 4017	n:550000
Cons ci ratio: 2.349633e-02	ci left: 4.760287e-02	ci right 4.873644e-02	k: 26492	n:550000
KS ci ratio: 1.292007e-01	ci left: 1.562934e-03	ci right 1.780551e-03	k: 918	n:550000
BTBD17   550000 perm   229 sec   (2398 perm/sec)   p_kst 1.669091e-03   p_cons 4.816727e-02   p_joint 7.303636e-03

Joint ci ratio: 6.110072e-02	ci left: 7.073424e-03	ci right 7.520981e-03	k: 4085	n:560000
Cons ci ratio: 2.329317e-02	ci left: 4.757831e-02	ci right 4.870137e-02	k: 26957	n:560000
KS ci ratio: 1.280905e-01	ci left: 1.562676e-03	ci right 1.778246e-03	k: 934	n:560000
BTBD17   560000 perm   236 sec   (2374 perm/sec)   p_kst 1.667857e-03   p_cons 4.813750e-02   p_joint 7.294643e-03

Joint ci ratio: 6.058413e-02	ci left: 7.070267e-03	ci right 7.513710e-03	k: 4155	n:570000
Cons ci ratio: 2.309077e-02	ci left: 4.757210e-02	ci right 4.868513e-02	k: 27432	n:570000
KS ci ratio: 1.268749e-01	ci left: 1.565833e-03	ci right 1.779634e-03	k: 952	n:570000
BTBD17   570000 perm   243 sec   (2350 perm/sec)   p_kst 1.670175e-03   p_cons 4.812632e-02   p_joint 7.289474e-03

Joint ci ratio: 6.005895e-02	ci left: 7.072330e-03	ci right 7.511923e-03	k: 4228	n:580000
Cons ci ratio: 2.287590e-02	ci left: 4.763645e-02	ci right 4.874048e-02	k: 27948	n:580000
KS ci ratio: 1.256933e-01	ci left: 1.568890e-03	ci right 1.780965e-03	k: 970	n:580000
BTBD17   580000 perm   249 sec   (2326 perm/sec)   p_kst 1.672414e-03   p_cons 4.818621e-02   p_joint 7.289655e-03

Joint ci ratio: 5.958209e-02	ci left: 7.065990e-03	ci right 7.501581e-03	k: 4296	n:590000
Cons ci ratio: 2.267781e-02	ci left: 4.765484e-02	ci right 4.874961e-02	k: 28438	n:590000
KS ci ratio: 1.248607e-01	ci left: 1.563642e-03	ci right 1.773503e-03	k: 983	n:590000
BTBD17   590000 perm   256 sec   (2302 perm/sec)   p_kst 1.666102e-03   p_cons 4.820000e-02   p_joint 7.281356e-03

Joint ci ratio: 5.898045e-02	ci left: 7.092719e-03	ci right 7.525392e-03	k: 4384	n:600000
Cons ci ratio: 2.248926e-02	ci left: 4.765441e-02	ci right 4.873995e-02	k: 28917	n:600000
KS ci ratio: 1.233033e-01	ci left: 1.577955e-03	ci right 1.786903e-03	k: 1008	n:600000
BTBD17   600000 perm   263 sec   (2279 perm/sec)   p_kst 1.680000e-03   p_cons 4.819500e-02   p_joint 7.306667e-03

Joint ci ratio: 5.852201e-02	ci left: 7.087897e-03	ci right 7.516802e-03	k: 4453	n:610000
Cons ci ratio: 2.231612e-02	ci left: 4.761001e-02	ci right 4.868609e-02	k: 29369	n:610000
KS ci ratio: 1.218027e-01	ci left: 1.591815e-03	ci right 1.799849e-03	k: 1033	n:610000
BTBD17   610000 perm   270 sec   (2256 perm/sec)   p_kst 1.693443e-03   p_cons 4.814590e-02   p_joint 7.300000e-03

Joint ci ratio: 5.800954e-02	ci left: 7.099140e-03	ci right 7.524838e-03	k: 4532	n:620000
Cons ci ratio: 2.213638e-02	ci left: 4.761040e-02	ci right 4.867770e-02	k: 29848	n:620000
KS ci ratio: 1.206413e-01	ci left: 1.597421e-03	ci right 1.804054e-03	k: 1053	n:620000
BTBD17   620000 perm   278 sec   (2234 perm/sec)   p_kst 1.698387e-03   p_cons 4.814194e-02   p_joint 7.309677e-03

Joint ci ratio: 5.706329e-02	ci left: 7.222703e-03	ci right 7.648512e-03	k: 4683	n:630000
Cons ci ratio: 2.196548e-02	ci left: 4.759185e-02	ci right 4.865040e-02	k: 30315	n:630000
KS ci ratio: 1.192901e-01	ci left: 1.609018e-03	ci right 1.814656e-03	k: 1077	n:630000
BTBD17   630000 perm   285 sec   (2212 perm/sec)   p_kst 1.709524e-03   p_cons 4.811905e-02   p_joint 7.433333e-03

Joint ci ratio: 5.720211e-02	ci left: 7.075949e-03	ci right 7.494155e-03	k: 4661	n:640000
Cons ci ratio: 2.178176e-02	ci left: 4.764387e-02	ci right 4.869460e-02	k: 30827	n:640000
KS ci ratio: 1.185777e-01	ci left: 1.603585e-03	ci right 1.807218e-03	k: 1090	n:640000
BTBD17   640000 perm   292 sec   (2190 perm/sec)   p_kst 1.703125e-03   p_cons 4.816719e-02   p_joint 7.282813e-03

Joint ci ratio: 5.672325e-02	ci left: 7.086897e-03	ci right 7.502128e-03	k: 4740	n:650000
Cons ci ratio: 2.161817e-02	ci left: 4.762851e-02	ci right 4.867091e-02	k: 31296	n:650000
KS ci ratio: 1.173994e-01	ci left: 1.611762e-03	ci right 1.814259e-03	k: 1112	n:650000
BTBD17   650000 perm   300 sec   (2169 perm/sec)   p_kst 1.710769e-03   p_cons 4.814769e-02   p_joint 7.292308e-03

Joint ci ratio: 5.675053e-02	ci left: 6.973533e-03	ci right 7.382326e-03	k: 4736	n:660000
Cons ci ratio: 2.143588e-02	ci left: 4.770860e-02	ci right 4.874385e-02	k: 31828	n:660000
KS ci ratio: 1.161532e-01	ci left: 1.622643e-03	ci right 1.824195e-03	k: 1136	n:660000
BTBD17   660000 perm   307 sec   (2148 perm/sec)   p_kst 1.721212e-03   p_cons 4.822424e-02   p_joint 7.175758e-03

Joint ci ratio: 5.579481e-02	ci left: 7.109325e-03	ci right 7.518833e-03	k: 4899	n:670000
Cons ci ratio: 2.127540e-02	ci left: 4.771210e-02	ci right 4.873957e-02	k: 32310	n:670000
KS ci ratio: 1.150451e-01	ci left: 1.630311e-03	ci right 1.830753e-03	k: 1158	n:670000
BTBD17   670000 perm   315 sec   (2129 perm/sec)   p_kst 1.728358e-03   p_cons 4.822388e-02   p_joint 7.311940e-03

Joint ci ratio: 5.589558e-02	ci left: 6.980112e-03	ci right 7.382927e-03	k: 4882	n:680000
Cons ci ratio: 2.110832e-02	ci left: 4.775941e-02	ci right 4.877973e-02	k: 32822	n:680000
KS ci ratio: 1.142106e-01	ci left: 1.630619e-03	ci right 1.829546e-03	k: 1175	n:680000
BTBD17   680000 perm   322 sec   (2110 perm/sec)   p_kst 1.727941e-03   p_cons 4.826765e-02   p_joint 7.179412e-03

Joint ci ratio: 5.547671e-02	ci left: 6.984705e-03	ci right 7.384667e-03	k: 4956	n:690000
Cons ci ratio: 2.095305e-02	ci left: 4.777078e-02	ci right 4.878374e-02	k: 33310	n:690000
KS ci ratio: 1.134893e-01	ci left: 1.628107e-03	ci right 1.825389e-03	k: 1190	n:690000
BTBD17   690000 perm   330 sec   (2091 perm/sec)   p_kst 1.724638e-03   p_cons 4.827536e-02   p_joint 7.182609e-03

Joint ci ratio: 5.454536e-02	ci left: 7.124454e-03	ci right 7.525354e-03	k: 5126	n:700000
Cons ci ratio: 2.080213e-02	ci left: 4.777758e-02	ci right 4.878331e-02	k: 33795	n:700000
KS ci ratio: 1.125480e-01	ci left: 1.632612e-03	ci right 1.828691e-03	k: 1210	n:700000
BTBD17   700000 perm   338 sec   (2072 perm/sec)   p_kst 1.728571e-03   p_cons 4.827857e-02   p_joint 7.322857e-03

Joint ci ratio: 5.411399e-02	ci left: 7.138035e-03	ci right 7.536423e-03	k: 5208	n:710000
Cons ci ratio: 2.065378e-02	ci left: 4.778702e-02	ci right 4.878568e-02	k: 34282	n:710000
KS ci ratio: 1.117207e-01	ci left: 1.634259e-03	ci right 1.828997e-03	k: 1228	n:710000
BTBD17   710000 perm   346 sec   (2054 perm/sec)   p_kst 1.729577e-03   p_cons 4.828451e-02   p_joint 7.335211e-03

Joint ci ratio: 5.372340e-02	ci left: 7.143028e-03	ci right 7.538729e-03	k: 5284	n:720000
Cons ci ratio: 2.051446e-02	ci left: 4.776996e-02	ci right 4.876146e-02	k: 34750	n:720000
KS ci ratio: 1.110453e-01	ci left: 1.631814e-03	ci right 1.825008e-03	k: 1243	n:720000
BTBD17   720000 perm   354 sec   (2035 perm/sec)   p_kst 1.726389e-03   p_cons 4.826389e-02   p_joint 7.338889e-03

Joint ci ratio: 5.330109e-02	ci left: 7.158709e-03	ci right 7.552065e-03	k: 5368	n:730000
Cons ci ratio: 2.037701e-02	ci left: 4.775748e-02	ci right 4.874200e-02	k: 35221	n:730000
KS ci ratio: 1.099888e-01	ci left: 1.641428e-03	ci right 1.833793e-03	k: 1267	n:730000
BTBD17   730000 perm   362 sec   (2018 perm/sec)   p_kst 1.735616e-03   p_cons 4.824795e-02   p_joint 7.353425e-03

Joint ci ratio: 5.295221e-02	ci left: 7.156641e-03	ci right 7.547231e-03	k: 5439	n:740000
Cons ci ratio: 2.023632e-02	ci left: 4.777226e-02	ci right 4.875020e-02	k: 35712	n:740000
KS ci ratio: 1.095582e-01	ci left: 1.632389e-03	ci right 1.822897e-03	k: 1277	n:740000
BTBD17   740000 perm   370 sec   (2000 perm/sec)   p_kst 1.725676e-03   p_cons 4.825946e-02   p_joint 7.350000e-03

Joint ci ratio: 5.266789e-02	ci left: 7.138845e-03	ci right 7.526308e-03	k: 5498	n:750000
Cons ci ratio: 2.011019e-02	ci left: 4.773358e-02	ci right 4.870458e-02	k: 36163	n:750000
KS ci ratio: 1.089633e-01	ci left: 1.628780e-03	ci right 1.817768e-03	k: 1291	n:750000
BTBD17   750000 perm   378 sec   (1983 perm/sec)   p_kst 1.721333e-03   p_cons 4.821733e-02   p_joint 7.330667e-03

Joint ci ratio: 5.234542e-02	ci left: 7.133211e-03	ci right 7.517927e-03	k: 5566	n:760000
Cons ci ratio: 1.998495e-02	ci left: 4.770249e-02	ci right 4.866674e-02	k: 36619	n:760000
KS ci ratio: 1.084195e-01	ci left: 1.623989e-03	ci right 1.811421e-03	k: 1304	n:760000
BTBD17   760000 perm   387 sec   (1965 perm/sec)   p_kst 1.715789e-03   p_cons 4.818289e-02   p_joint 7.323684e-03

Joint ci ratio: 5.032072e-02	ci left: 7.622664e-03	ci right 8.017415e-03	k: 6020	n:770000
Cons ci ratio: 1.985162e-02	ci left: 4.772006e-02	ci right 4.867815e-02	k: 37112	n:770000
KS ci ratio: 1.076386e-01	ci left: 1.626907e-03	ci right 1.813237e-03	k: 1323	n:770000
BTBD17   770000 perm   395 sec   (1949 perm/sec)   p_kst 1.718182e-03   p_cons 4.819740e-02   p_joint 7.818182e-03

Joint ci ratio: 5.004756e-02	ci left: 7.608490e-03	ci right 8.000307e-03	k: 6086	n:780000
Cons ci ratio: 1.972037e-02	ci left: 4.773974e-02	ci right 4.869182e-02	k: 37607	n:780000
KS ci ratio: 1.070342e-01	ci left: 1.624764e-03	ci right 1.809738e-03	k: 1338	n:780000
BTBD17   780000 perm   404 sec   (1933 perm/sec)   p_kst 1.715385e-03   p_cons 4.821410e-02   p_joint 7.802564e-03

Joint ci ratio: 4.969746e-02	ci left: 7.619685e-03	ci right 8.009254e-03	k: 6172	n:790000
Cons ci ratio: 1.959790e-02	ci left: 4.772997e-02	ci right 4.867588e-02	k: 38079	n:790000
KS ci ratio: 1.062043e-01	ci left: 1.630071e-03	ci right 1.814120e-03	k: 1359	n:790000
BTBD17   790000 perm   412 sec   (1917 perm/sec)   p_kst 1.720253e-03   p_cons 4.820127e-02   p_joint 7.812658e-03

Joint ci ratio: 4.935461e-02	ci left: 7.630608e-03	ci right 8.017968e-03	k: 6258	n:800000
Cons ci ratio: 1.947000e-02	ci left: 4.775654e-02	ci right 4.869673e-02	k: 38580	n:800000
KS ci ratio: 1.052029e-01	ci left: 1.641336e-03	ci right 1.824802e-03	k: 1385	n:800000
BTBD17   800000 perm   421 sec   (1901 perm/sec)   p_kst 1.731250e-03   p_cons 4.822500e-02   p_joint 7.822500e-03

Joint ci ratio: 4.905384e-02	ci left: 7.630295e-03	ci right 8.015212e-03	k: 6335	n:810000
Cons ci ratio: 1.934665e-02	ci left: 4.777265e-02	ci right 4.870713e-02	k: 39073	n:810000
KS ci ratio: 1.048259e-01	ci left: 1.633094e-03	ci right 1.814944e-03	k: 1395	n:810000
BTBD17   810000 perm   430 sec   (1886 perm/sec)   p_kst 1.722222e-03   p_cons 4.823827e-02   p_joint 7.820988e-03

Joint ci ratio: 4.874317e-02	ci left: 7.634816e-03	ci right 8.017453e-03	k: 6416	n:820000
Cons ci ratio: 1.922485e-02	ci left: 4.779202e-02	ci right 4.872093e-02	k: 39569	n:820000
KS ci ratio: 1.041565e-01	ci left: 1.634555e-03	ci right 1.815335e-03	k: 1413	n:820000
BTBD17   820000 perm   438 sec   (1870 perm/sec)   p_kst 1.723171e-03   p_cons 4.825488e-02   p_joint 7.824390e-03

Joint ci ratio: 4.843083e-02	ci left: 7.641616e-03	ci right 8.022072e-03	k: 6499	n:830000
Cons ci ratio: 1.910707e-02	ci left: 4.780255e-02	ci right 4.872591e-02	k: 40058	n:830000
KS ci ratio: 1.036085e-01	ci left: 1.632465e-03	ci right 1.812005e-03	k: 1428	n:830000
BTBD17   830000 perm   447 sec   (1855 perm/sec)   p_kst 1.720482e-03   p_cons 4.826265e-02   p_joint 7.830120e-03

Joint ci ratio: 4.821677e-02	ci left: 7.618856e-03	ci right 7.996455e-03	k: 6557	n:840000
Cons ci ratio: 1.899783e-02	ci left: 4.778203e-02	ci right 4.869966e-02	k: 40521	n:840000
KS ci ratio: 1.032124e-01	ci left: 1.625787e-03	ci right 1.803868e-03	k: 1439	n:840000
BTBD17   840000 perm   456 sec   (1840 perm/sec)   p_kst 1.713095e-03   p_cons 4.823929e-02   p_joint 7.805952e-03

Joint ci ratio: 4.792529e-02	ci left: 7.622209e-03	ci right 7.997627e-03	k: 6637	n:850000
Cons ci ratio: 1.888077e-02	ci left: 4.780886e-02	ci right 4.872128e-02	k: 41024	n:850000
KS ci ratio: 1.025733e-01	ci left: 1.627292e-03	ci right 1.804367e-03	k: 1457	n:850000
BTBD17   850000 perm   466 sec   (1825 perm/sec)   p_kst 1.714118e-03   p_cons 4.826353e-02   p_joint 7.808235e-03

Joint ci ratio: 4.762474e-02	ci left: 7.630087e-03	ci right 8.003472e-03	k: 6721	n:860000
Cons ci ratio: 1.877344e-02	ci left: 4.779803e-02	ci right 4.870501e-02	k: 41495	n:860000
KS ci ratio: 1.019805e-01	ci left: 1.627631e-03	ci right 1.803659e-03	k: 1474	n:860000
BTBD17   860000 perm   475 sec   (1811 perm/sec)   p_kst 1.713953e-03   p_cons 4.825000e-02   p_joint 7.815116e-03

Joint ci ratio: 4.735081e-02	ci left: 7.630976e-03	ci right 8.002198e-03	k: 6799	n:870000
Cons ci ratio: 1.866606e-02	ci left: 4.779663e-02	ci right 4.869834e-02	k: 41974	n:870000
KS ci ratio: 1.013978e-01	ci left: 1.627966e-03	ci right 1.802964e-03	k: 1491	n:870000
BTBD17   870000 perm   484 sec   (1797 perm/sec)   p_kst 1.713793e-03   p_cons 4.824598e-02   p_joint 7.814943e-03

Joint ci ratio: 4.711955e-02	ci left: 7.619496e-03	ci right 7.988300e-03	k: 6866	n:880000
Cons ci ratio: 1.855774e-02	ci left: 4.780885e-02	ci right 4.870549e-02	k: 42465	n:880000
KS ci ratio: 1.009928e-01	ci left: 1.622758e-03	ci right 1.796458e-03	k: 1503	n:880000
BTBD17   880000 perm   493 sec   (1783 perm/sec)   p_kst 1.707955e-03   p_cons 4.825568e-02   p_joint 7.802273e-03

Joint ci ratio: 4.641502e-02	ci left: 7.765983e-03	ci right 8.136107e-03	k: 7075	n:890000
Cons ci ratio: 1.844880e-02	ci left: 4.783311e-02	ci right 4.872489e-02	k: 42967	n:890000
KS ci ratio: 1.001633e-01	ci left: 1.631908e-03	ci right 1.805069e-03	k: 1528	n:890000
BTBD17   890000 perm   503 sec   (1770 perm/sec)   p_kst 1.716854e-03   p_cons 4.827753e-02   p_joint 7.949438e-03

Joint ci ratio: 4.652657e-02	ci left: 7.643442e-03	ci right 8.008625e-03	k: 7042	n:900000
Cons ci ratio: 1.834509e-02	ci left: 4.784025e-02	ci right 4.872710e-02	k: 43454	n:900000
KS ci ratio: 9.954662e-02	ci left: 1.634360e-03	ci right 1.806650e-03	k: 1547	n:900000
BTBD17   900000 perm   512 sec   (1757 perm/sec)   p_kst 1.718889e-03   p_cons 4.828222e-02   p_joint 7.824444e-03

Outputting figure to mutsig2_images.part000000000017/BTBD17.2_1449_900000_0.0017189_0.048282_0.0078244.png
                gene_name: BTBD17
               theta_stop: 0.100 
                    nperm: 900000 
                     p_ks: 0.0017 
        ci_ks_bounds_left: 0.0016 
       ci_ks_bounds_right: 0.0018 
                   p_cons: 0.048 
      ci_cons_bounds_left: 0.048 
     ci_cons_bounds_right: 0.049 
                  p_joint: 0.0078 
     ci_joint_bounds_left: 0.0076 
    ci_joint_bounds_right: 0.0080 

Current progress: 93 percent done.
BTBD6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.428612e-02	ci left: 8.763339e-01	ci right 8.890423e-01	k: 8828	n:10000
Cons ci ratio: 7.499060e-02	ci left: 2.064889e-01	ci right 2.226777e-01	k: 2145	n:10000
KS ci ratio: 3.395300e-02	ci left: 5.615307e-01	ci right 5.810277e-01	k: 5713	n:10000
BTBD6   10000 perm   1 sec   (6709 perm/sec)   p_kst 5.713000e-01   p_cons 2.145000e-01   p_joint 8.828000e-01

Outputting figure to mutsig2_images.part000000000017/BTBD6.2_1474_10000_0.5713_0.2145_0.8828.png
                gene_name: BTBD6
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 96 percent done.
BTBD7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.602870e-02	ci left: 4.105999e-01	ci right 4.300466e-01	k: 4203	n:10000
KS ci ratio: 2.976194e-02	ci left: 6.247723e-01	ci right 6.437494e-01	k: 6343	n:10000
BTBD7   10000 perm   2 sec   (5504 perm/sec)   p_kst 6.343000e-01   p_cons 4.203000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000017/BTBD7.2_3514_10000_0.6343_0.4203_1.png
                gene_name: BTBD7
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
BTD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.051572e-03	ci left: 9.555548e-01	ci right 9.633747e-01	k: 9596	n:10000
Cons ci ratio: 4.849424e-02	ci left: 3.855000e-01	ci right 4.047611e-01	k: 3951	n:10000
KS ci ratio: 2.910462e-02	ci left: 6.351279e-01	ci right 6.539878e-01	k: 6446	n:10000
BTD   10000 perm   2 sec   (6272 perm/sec)   p_kst 6.446000e-01   p_cons 3.951000e-01   p_joint 9.596000e-01

Outputting figure to mutsig2_images.part000000000017/BTD.2_1648_10000_0.6446_0.3951_0.9596.png
                gene_name: BTD
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.96 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000017
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 17 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1533>
Subject: Job 8003888: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1533>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000018> was used as the working directory.
Started at Sun Nov 11 15:03:53 2012
Results reported at Sun Nov 11 15:11:35 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000018.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000018.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 18  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000018.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    525.93 sec.
    Max Memory :      4797 MB
    Max Swap   :      7067 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
18
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 18
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 18: processing genes 1539 - 1628
Calculating significance of each gene.
Using projection method.
1539	BTG2	1
1540	BTG3	2.453176e-01
1541	BTG4	1
1542	BTK	6.127695e-01
1543	BTLA	5.719020e-01
1544	BTN1A1	9.223260e-02
1545	BTN2A1	7.023234e-01
1546	BTN2A2	2.796662e-02
1547	BTN3A1	1
1548	BTN3A2	7.935991e-01
1549	BTN3A3	8.764510e-01
1550	BTNL2	6.474033e-01
1551	BTNL3	9.765562e-02
1552	BTNL8	2.122314e-01
1553	BTNL9	5.856184e-01
1554	BTRC	8.872873e-01
1555	BUB1	5.599280e-01
1556	BUB1B	8.900559e-01
1557	BUB3	4.095119e-01
1558	BUD13	5.537318e-01
1559	BUD31	1
1560	BVES	3.714263e-01
1561	BYSL	6.267927e-01
1562	BZRAP1	9.212117e-01
1563	BZW1	1
1564	BZW2	1
1565	C10orf10	5.239866e-01
1566	C10orf107	1.845630e-01
1567	C10orf11	3.335706e-01
1568	C10orf111	1.407584e-01
1569	C10orf113	1
1570	C10orf114	1
1571	C10orf116	1
1572	C10orf118	4.679682e-01
1573	C10orf119	4.226732e-01
1574	C10orf12	9.247413e-01
1575	C10orf120	3.120911e-01
1576	C10orf125	1
1577	C10orf128	1
1578	C10orf129	4.683819e-01
1579	C10orf137	1
1580	C10orf140	6.765816e-01
1581	C10orf18	1
1582	C10orf2	9.432791e-01
1583	C10orf25	1
1584	C10orf26	1
1585	C10orf27	5.376924e-01
1586	C10orf28	8.797400e-01
1587	C10orf32	1
1588	C10orf35	1.591398e-01
1589	C10orf46	3.293016e-01
1590	C10orf47	1
1591	C10orf53	1.717113e-01
1592	C10orf54	1
1593	C10orf55	1
1594	C10orf57	1
1595	C10orf58	8.715381e-02
1596	C10orf62	1
1597	C10orf67	2.973222e-02
1598	C10orf68	1
1599	C10orf71	6.456257e-01
1600	C10orf72	6.930853e-02
1601	C10orf76	1
1602	C10orf78	1
1603	C10orf79	4.234867e-01
1604	C10orf81	4.964254e-01
1605	C10orf82	1
1606	C10orf84	5.544941e-01
1607	C10orf88	2.578021e-02
1608	C10orf90	8.880191e-01
1609	C10orf91	3.613896e-01
1610	C10orf93	6.832761e-01
1611	C10orf96	1
1612	C10orf99	1
1613	C11orf1	1
1614	C11orf10	1.427239e-01
1615	C11orf16	4.816418e-02
1616	C11orf17	2.654898e-01
1617	C11orf2	7.269613e-01
1618	C11orf20	1
1619	C11orf24	7.100411e-01
1620	C11orf30	7.847767e-01
1621	C11orf31	1
1622	C11orf35	7.122267e-01
1623	C11orf40	1
1624	C11orf41	1
1625	C11orf42	1
1626	C11orf45	1
1627	C11orf46	3.461581e-01
1628	C11orf48	1
Done

Running MutSig 2:
Scatter job 18: processing genes 1539 - 1628
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
C10orf79
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.297765e-02	ci left: 3.443228e-01	ci right 3.631625e-01	k: 3537	n:10000
Cons ci ratio: 1.564081e-02	ci left: 8.557989e-01	ci right 8.693892e-01	k: 8627	n:10000
KS ci ratio: 6.589183e-02	ci left: 2.527095e-01	ci right 2.700297e-01	k: 2613	n:10000
C10orf79   10000 perm   3 sec   (3897 perm/sec)   p_kst 2.613000e-01   p_cons 8.627000e-01   p_joint 3.537000e-01

Outputting figure to mutsig2_images.part000000000018/C10orf79.9_5150_10000_0.2613_0.8627_0.3537.png
                gene_name: C10orf79
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 2 percent done.
C11orf30
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.771708e-02	ci left: 8.228987e-01	ci right 8.377084e-01	k: 8304	n:10000
Cons ci ratio: 1.151716e-02	ci left: 9.151276e-01	ci right 9.258259e-01	k: 9206	n:10000
KS ci ratio: 2.628565e-02	ci left: 6.806294e-01	ci right 6.988600e-01	k: 6898	n:10000
C11orf30   10000 perm   2 sec   (4173 perm/sec)   p_kst 6.898000e-01   p_cons 9.206000e-01   p_joint 8.304000e-01

Outputting figure to mutsig2_images.part000000000018/C11orf30.8_4049_10000_0.6898_0.9206_0.8304.png
                gene_name: C11orf30
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 5 percent done.
BTK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.386890e-02	ci left: 8.824747e-01	ci right 8.948979e-01	k: 8888	n:10000
Cons ci ratio: 7.205586e-03	ci left: 9.637304e-01	ci right 9.707940e-01	k: 9674	n:10000
KS ci ratio: 2.241456e-02	ci left: 7.450311e-01	ci right 7.620210e-01	k: 7536	n:10000
BTK   10000 perm   2 sec   (4739 perm/sec)   p_kst 7.536000e-01   p_cons 9.674000e-01   p_joint 8.888000e-01

Outputting figure to mutsig2_images.part000000000018/BTK.7_2052_10000_0.7536_0.9674_0.8888.png
                gene_name: BTK
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 7 percent done.
BTN2A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.573434e-02	ci left: 6.897011e-01	ci right 7.077830e-01	k: 6988	n:10000
Cons ci ratio: 4.343503e-02	ci left: 4.390178e-01	ci right 4.586120e-01	k: 4488	n:10000
KS ci ratio: 2.823983e-02	ci left: 6.489092e-01	ci right 6.675985e-01	k: 6583	n:10000
BTN2A2   10000 perm   2 sec   (5885 perm/sec)   p_kst 6.583000e-01   p_cons 4.488000e-01   p_joint 6.988000e-01

Outputting figure to mutsig2_images.part000000000018/BTN2A2.7_1600_10000_0.6583_0.4488_0.6988.png
                gene_name: BTN2A2
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 10 percent done.
C10orf90
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.033297e-02	ci left: 9.300936e-01	ci right 9.398511e-01	k: 9351	n:10000
Cons ci ratio: 5.596939e-02	ci left: 3.197920e-01	ci right 3.383077e-01	k: 3290	n:10000
KS ci ratio: 1.417551e-02	ci left: 8.779709e-01	ci right 8.906043e-01	k: 8844	n:10000
C10orf90   10000 perm   2 sec   (5164 perm/sec)   p_kst 8.844000e-01   p_cons 3.290000e-01   p_joint 9.351000e-01

Outputting figure to mutsig2_images.part000000000018/C10orf90.7_2136_10000_0.8844_0.329_0.9351.png
                gene_name: C10orf90
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 12 percent done.
C11orf41
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.533769e-02	ci left: 6.962555e-01	ci right 7.142248e-01	k: 7053	n:10000
KS ci ratio: 1.504163e-02	ci left: 8.649871e-01	ci right 8.781956e-01	k: 8717	n:10000
C11orf41   10000 perm   3 sec   (3868 perm/sec)   p_kst 8.717000e-01   p_cons 7.053000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000018/C11orf41.7_5648_10000_0.8717_0.7053_1.png
                gene_name: C11orf41
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 15 percent done.
BUB1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.286200e-02	ci left: 3.453165e-01	ci right 3.641682e-01	k: 3547	n:10000
Cons ci ratio: 9.596083e-02	ci left: 1.360954e-01	ci right 1.499133e-01	k: 1429	n:10000
KS ci ratio: 2.298773e-02	ci left: 7.354271e-01	ci right 7.526306e-01	k: 7441	n:10000
BUB1B   10000 perm   2 sec   (4730 perm/sec)   p_kst 7.441000e-01   p_cons 1.429000e-01   p_joint 3.547000e-01

Outputting figure to mutsig2_images.part000000000018/BUB1B.6_3245_10000_0.7441_0.1429_0.3547.png
                gene_name: BUB1B
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 17 percent done.
BTN1A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.546746e-02	ci left: 5.399856e-01	ci right 5.595854e-01	k: 5498	n:10000
Cons ci ratio: 1.923880e-02	ci left: 7.980096e-01	ci right 8.136118e-01	k: 8059	n:10000
KS ci ratio: 4.627510e-02	ci left: 4.080090e-01	ci right 4.274390e-01	k: 4177	n:10000
BTN1A1   10000 perm   2 sec   (5454 perm/sec)   p_kst 4.177000e-01   p_cons 8.059000e-01   p_joint 5.498000e-01

Outputting figure to mutsig2_images.part000000000018/BTN1A1.5_1609_10000_0.4177_0.8059_0.5498.png
                gene_name: BTN1A1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 20 percent done.
C10orf137
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.382332e-02	ci left: 4.346283e-01	ci right 4.542041e-01	k: 4444	n:10000
KS ci ratio: 1.977813e-02	ci left: 7.890818e-01	ci right 8.049448e-01	k: 7971	n:10000
C10orf137   10000 perm   2 sec   (4625 perm/sec)   p_kst 7.971000e-01   p_cons 4.444000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000018/C10orf137.5_3711_10000_0.7971_0.4444_1.png
                gene_name: C10orf137
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 22 percent done.
C10orf71
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.454299e-02	ci left: 3.312097e-01	ci right 3.498832e-01	k: 3405	n:10000
Cons ci ratio: 5.176048e-02	ci left: 3.549581e-01	ci right 3.739210e-01	k: 3644	n:10000
KS ci ratio: 7.144074e-02	ci left: 2.230647e-01	ci right 2.396920e-01	k: 2313	n:10000
C10orf71   10000 perm   2 sec   (4258 perm/sec)   p_kst 2.313000e-01   p_cons 3.644000e-01   p_joint 3.405000e-01

Outputting figure to mutsig2_images.part000000000018/C10orf71.5_4402_10000_0.2313_0.3644_0.3405.png
                gene_name: C10orf71
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 24 percent done.
C10orf72
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.875794e-02	ci left: 8.059280e-01	ci right 8.212889e-01	k: 8137	n:10000
KS ci ratio: 5.555591e-03	ci left: 9.774889e-01	ci right 9.830263e-01	k: 9804	n:10000
C10orf72   10000 perm   2 sec   (5783 perm/sec)   p_kst 9.804000e-01   p_cons 8.137000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000018/C10orf72.5_1118_10000_0.9804_0.8137_1.png
                gene_name: C10orf72
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 27 percent done.
C10orf88
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.642880e-02	ci left: 3.162190e-01	ci right 3.346828e-01	k: 3254	n:10000
Cons ci ratio: 7.984796e-02	ci left: 1.863882e-01	ci right 2.019904e-01	k: 1941	n:10000
KS ci ratio: 3.323079e-02	ci left: 5.720595e-01	ci right 5.914928e-01	k: 5818	n:10000
C10orf88   10000 perm   2 sec   (5570 perm/sec)   p_kst 5.818000e-01   p_cons 1.941000e-01   p_joint 3.254000e-01

Outputting figure to mutsig2_images.part000000000018/C10orf88.5_1362_10000_0.5818_0.1941_0.3254.png
                gene_name: C10orf88
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 29 percent done.
C11orf16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.726153e-02	ci left: 3.098686e-01	ci right 3.282369e-01	k: 3190	n:10000
Cons ci ratio: 8.176015e-02	ci left: 1.792031e-01	ci right 1.945798e-01	k: 1868	n:10000
KS ci ratio: 4.195586e-02	ci left: 4.561840e-01	ci right 4.758358e-01	k: 4660	n:10000
C11orf16   10000 perm   2 sec   (5630 perm/sec)   p_kst 4.660000e-01   p_cons 1.868000e-01   p_joint 3.190000e-01

Outputting figure to mutsig2_images.part000000000018/C11orf16.5_1424_10000_0.466_0.1868_0.319.png
                gene_name: C11orf16
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 32 percent done.
BTN3A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.042418e-02	ci left: 7.783356e-01	ci right 7.944972e-01	k: 7865	n:10000
KS ci ratio: 1.733853e-02	ci left: 8.290021e-01	ci right 8.436014e-01	k: 8364	n:10000
BTN3A3   10000 perm   2 sec   (5475 perm/sec)   p_kst 8.364000e-01   p_cons 7.865000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000018/BTN3A3.4_1791_10000_0.8364_0.7865_1.png
                gene_name: BTN3A3
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 34 percent done.
BTNL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.515890e-03	ci left: 9.698435e-01	ci right 9.762769e-01	k: 9732	n:10000
KS ci ratio: 1.857217e-02	ci left: 8.089748e-01	ci right 8.242403e-01	k: 8167	n:10000
BTNL3   10000 perm   2 sec   (6067 perm/sec)   p_kst 8.167000e-01   p_cons 9.732000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000018/BTNL3.4_1433_10000_0.8167_0.9732_1.png
                gene_name: BTNL3
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 37 percent done.
BTNL8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.790262e-03	ci left: 9.478349e-01	ci right 9.562992e-01	k: 9522	n:10000
Cons ci ratio: 1.206707e-02	ci left: 9.078193e-01	ci right 9.189385e-01	k: 9135	n:10000
KS ci ratio: 2.202230e-02	ci left: 7.516055e-01	ci right 7.684428e-01	k: 7601	n:10000
BTNL8   10000 perm   2 sec   (5823 perm/sec)   p_kst 7.601000e-01   p_cons 9.135000e-01   p_joint 9.522000e-01

Outputting figure to mutsig2_images.part000000000018/BTNL8.4_1691_10000_0.7601_0.9135_0.9522.png
                gene_name: BTNL8
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 39 percent done.
BTNL9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.503941e-02	ci left: 7.011979e-01	ci right 7.190795e-01	k: 7102	n:10000
Cons ci ratio: 6.010744e-02	ci left: 2.893427e-01	ci right 3.073749e-01	k: 2983	n:10000
KS ci ratio: 1.716091e-02	ci left: 8.318516e-01	ci right 8.463503e-01	k: 8392	n:10000
BTNL9   10000 perm   2 sec   (5845 perm/sec)   p_kst 8.392000e-01   p_cons 2.983000e-01   p_joint 7.102000e-01

Outputting figure to mutsig2_images.part000000000018/BTNL9.4_1648_10000_0.8392_0.2983_0.7102.png
                gene_name: BTNL9
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 41 percent done.
BUB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.753382e-02	ci left: 6.602828e-01	ci right 6.788183e-01	k: 6696	n:10000
Cons ci ratio: 6.814967e-02	ci left: 2.400544e-01	ci right 2.570923e-01	k: 2485	n:10000
KS ci ratio: 1.408530e-02	ci left: 8.793013e-01	ci right 8.918731e-01	k: 8857	n:10000
BUB1   10000 perm   2 sec   (5024 perm/sec)   p_kst 8.857000e-01   p_cons 2.485000e-01   p_joint 6.696000e-01

Outputting figure to mutsig2_images.part000000000018/BUB1.4_3358_10000_0.8857_0.2485_0.6696.png
                gene_name: BUB1
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 44 percent done.
BZRAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.113278e-01	ci left: 1.041267e-01	ci right 1.165013e-01	k: 1102	n:10000
Cons ci ratio: 1.555655e-01	ci left: 5.503869e-02	ci right 6.441983e-02	k: 596	n:10000
KS ci ratio: 8.088317e-02	ci left: 1.824506e-01	ci right 1.979303e-01	k: 1901	n:10000
BZRAP1   10000 perm   3 sec   (3916 perm/sec)   p_kst 1.901000e-01   p_cons 5.960000e-02   p_joint 1.102000e-01

Joint ci ratio: 9.132389e-02	ci left: 8.048507e-02	ci right 8.823627e-02	k: 1686	n:20000
Cons ci ratio: 1.053865e-01	ci left: 6.128043e-02	ci right 6.814678e-02	k: 1293	n:20000
KS ci ratio: 5.710114e-02	ci left: 1.852262e-01	ci right 1.961638e-01	k: 3813	n:20000
BZRAP1   20000 perm   6 sec   (3574 perm/sec)   p_kst 1.906500e-01   p_cons 6.465000e-02   p_joint 8.430000e-02

Joint ci ratio: 8.979171e-02	ci left: 5.704500e-02	ci right 6.244065e-02	k: 1791	n:30000
Cons ci ratio: 8.343572e-02	ci left: 6.566681e-02	ci right 7.141709e-02	k: 2055	n:30000
KS ci ratio: 4.665332e-02	ci left: 1.860367e-01	ci right 1.949566e-01	k: 5714	n:30000
BZRAP1   30000 perm   9 sec   (3444 perm/sec)   p_kst 1.904667e-01   p_cons 6.850000e-02   p_joint 5.970000e-02

Outputting figure to mutsig2_images.part000000000018/BZRAP1.4_5698_30000_0.19047_0.0685_0.0597.png
                gene_name: BZRAP1
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.069 
      ci_cons_bounds_left: 0.066 
     ci_cons_bounds_right: 0.071 
                  p_joint: 0.060 
     ci_joint_bounds_left: 0.057 
    ci_joint_bounds_right: 0.062 

Current progress: 46 percent done.
C10orf118
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.431310e-02	ci left: 3.330967e-01	ci right 3.517951e-01	k: 3424	n:10000
Cons ci ratio: 8.213870e-02	ci left: 1.778256e-01	ci right 1.931581e-01	k: 1854	n:10000
KS ci ratio: 2.914273e-02	ci left: 6.345245e-01	ci right 6.533915e-01	k: 6440	n:10000
C10orf118   10000 perm   2 sec   (5228 perm/sec)   p_kst 6.440000e-01   p_cons 1.854000e-01   p_joint 3.424000e-01

Outputting figure to mutsig2_images.part000000000018/C10orf118.4_2757_10000_0.644_0.1854_0.3424.png
                gene_name: C10orf118
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 49 percent done.
C10orf18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.798399e-02	ci left: 1.937745e-01	ci right 2.095997e-01	k: 2016	n:10000
Cons ci ratio: 4.369932e-02	ci left: 4.360249e-01	ci right 4.556067e-01	k: 4458	n:10000
KS ci ratio: 1.029115e-01	ci left: 1.201421e-01	ci right 1.332762e-01	k: 1266	n:10000
C10orf18   10000 perm   3 sec   (3176 perm/sec)   p_kst 1.266000e-01   p_cons 4.458000e-01   p_joint 2.016000e-01

Joint ci ratio: 5.277655e-02	ci left: 2.104619e-01	ci right 2.219207e-01	k: 4323	n:20000
Cons ci ratio: 3.102497e-02	ci left: 4.369479e-01	ci right 4.507684e-01	k: 8877	n:20000
KS ci ratio: 7.241124e-02	ci left: 1.231530e-01	ci right 1.324555e-01	k: 2555	n:20000
C10orf18   20000 perm   7 sec   (2955 perm/sec)   p_kst 1.277500e-01   p_cons 4.438500e-01   p_joint 2.161500e-01

Outputting figure to mutsig2_images.part000000000018/C10orf18.4_7365_20000_0.12775_0.44385_0.21615.png
                gene_name: C10orf18
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 51 percent done.
BTG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.138550e-02	ci left: 1.805807e-01	ci right 1.960013e-01	k: 1882	n:10000
Cons ci ratio: 7.516901e-02	ci left: 2.057000e-01	ci right 2.218670e-01	k: 2137	n:10000
KS ci ratio: 1.025873e-01	ci left: 1.208265e-01	ci right 1.339914e-01	k: 1273	n:10000
BTG3   10000 perm   2 sec   (5604 perm/sec)   p_kst 1.273000e-01   p_cons 2.137000e-01   p_joint 1.882000e-01

Joint ci ratio: 8.931503e-02	ci left: 8.391296e-02	ci right 9.180734e-02	k: 1756	n:20000
Cons ci ratio: 5.274542e-02	ci left: 2.106600e-01	ci right 2.221226e-01	k: 4327	n:20000
KS ci ratio: 7.392778e-02	ci left: 1.186750e-01	ci right 1.278348e-01	k: 2464	n:20000
BTG3   20000 perm   4 sec   (5120 perm/sec)   p_kst 1.232000e-01   p_cons 2.163500e-01   p_joint 8.780000e-02

Outputting figure to mutsig2_images.part000000000018/BTG3.3_911_20000_0.1232_0.21635_0.0878.png
                gene_name: BTG3
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.088 
     ci_joint_bounds_left: 0.084 
    ci_joint_bounds_right: 0.092 

Current progress: 54 percent done.
BUD13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.455280e-02	ci left: 5.529105e-01	ci right 5.724530e-01	k: 5627	n:10000
Cons ci ratio: 6.123146e-02	ci left: 2.817130e-01	ci right 2.996091e-01	k: 2906	n:10000
KS ci ratio: 3.517473e-02	ci left: 5.440928e-01	ci right 5.636758e-01	k: 5539	n:10000
BUD13   10000 perm   2 sec   (5298 perm/sec)   p_kst 5.539000e-01   p_cons 2.906000e-01   p_joint 5.627000e-01

Outputting figure to mutsig2_images.part000000000018/BUD13.3_1900_10000_0.5539_0.2906_0.5627.png
                gene_name: BUD13
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 56 percent done.
C10orf119
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.931551e-02	ci left: 3.775373e-01	ci right 3.967285e-01	k: 3871	n:10000
Cons ci ratio: 1.197356e-01	ci left: 9.097541e-02	ci right 1.026607e-01	k: 967	n:10000
KS ci ratio: 2.313256e-02	ci left: 7.330016e-01	ci right 7.502574e-01	k: 7417	n:10000
C10orf119   10000 perm   2 sec   (5568 perm/sec)   p_kst 7.417000e-01   p_cons 9.670000e-02   p_joint 3.871000e-01

Joint ci ratio: 3.126171e-02	ci left: 4.332045e-01	ci right 4.470129e-01	k: 8802	n:20000
Cons ci ratio: 8.620424e-02	ci left: 8.964657e-02	ci right 9.777200e-02	k: 1873	n:20000
KS ci ratio: 1.641501e-02	ci left: 7.342140e-01	ci right 7.464161e-01	k: 14807	n:20000
C10orf119   20000 perm   4 sec   (4894 perm/sec)   p_kst 7.403500e-01   p_cons 9.365000e-02   p_joint 4.401000e-01

Outputting figure to mutsig2_images.part000000000018/C10orf119.3_1993_20000_0.74035_0.09365_0.4401.png
                gene_name: C10orf119
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.094 
      ci_cons_bounds_left: 0.090 
     ci_cons_bounds_right: 0.098 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 59 percent done.
C10orf12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.027259e-01	ci left: 1.205332e-01	ci right 1.336849e-01	k: 1270	n:10000
Cons ci ratio: 1.809983e-01	ci left: 4.073298e-02	ci right 4.893483e-02	k: 447	n:10000
KS ci ratio: 3.571888e-02	ci left: 5.364800e-01	ci right 5.560930e-01	k: 5463	n:10000
C10orf12   10000 perm   2 sec   (4681 perm/sec)   p_kst 5.463000e-01   p_cons 4.470000e-02   p_joint 1.270000e-01

Joint ci ratio: 7.870210e-02	ci left: 1.059903e-01	ci right 1.147233e-01	k: 2206	n:20000
Cons ci ratio: 1.224394e-01	ci left: 4.575777e-02	ci right 5.177429e-02	k: 974	n:20000
KS ci ratio: 2.555822e-02	ci left: 5.335127e-01	ci right 5.473755e-01	k: 10809	n:20000
C10orf12   20000 perm   5 sec   (4176 perm/sec)   p_kst 5.404500e-01   p_cons 4.870000e-02   p_joint 1.103000e-01

Joint ci ratio: 5.673829e-02	ci left: 1.333582e-01	ci right 1.411788e-01	k: 4117	n:30000
Cons ci ratio: 9.956132e-02	ci left: 4.668200e-02	ci right 5.160578e-02	k: 1473	n:30000
KS ci ratio: 2.096056e-02	ci left: 5.326052e-01	ci right 5.439207e-01	k: 16148	n:30000
C10orf12   30000 perm   7 sec   (4054 perm/sec)   p_kst 5.382667e-01   p_cons 4.910000e-02   p_joint 1.372333e-01

Outputting figure to mutsig2_images.part000000000018/C10orf12.3_3748_30000_0.53827_0.0491_0.13723.png
                gene_name: C10orf12
               theta_stop: 0.100 
                    nperm: 30000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.049 
      ci_cons_bounds_left: 0.047 
     ci_cons_bounds_right: 0.052 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 61 percent done.
C10orf58
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.335612e-02	ci left: 4.399157e-01	ci right 4.595136e-01	k: 4497	n:10000
Cons ci ratio: 4.404582e-02	ci left: 4.321347e-01	ci right 4.516992e-01	k: 4419	n:10000
KS ci ratio: 6.596015e-02	ci left: 2.523139e-01	ci right 2.696255e-01	k: 2609	n:10000
C10orf58   10000 perm   1 sec   (7248 perm/sec)   p_kst 2.609000e-01   p_cons 4.419000e-01   p_joint 4.497000e-01

Outputting figure to mutsig2_images.part000000000018/C10orf58.3_710_10000_0.2609_0.4419_0.4497.png
                gene_name: C10orf58
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 63 percent done.
C10orf96
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.433436e-02	ci left: 8.756178e-01	ci right 8.883587e-01	k: 8821	n:10000
KS ci ratio: 3.240467e-02	ci left: 5.842987e-01	ci right 6.036465e-01	k: 5940	n:10000
C10orf96   10000 perm   2 sec   (6620 perm/sec)   p_kst 5.940000e-01   p_cons 8.821000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000018/C10orf96.3_809_10000_0.594_0.8821_1.png
                gene_name: C10orf96
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 66 percent done.
BTN2A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.435360e-02	ci left: 7.126006e-01	ci right 7.302702e-01	k: 7215	n:10000
Cons ci ratio: 2.391178e-02	ci left: 7.199706e-01	ci right 7.374960e-01	k: 7288	n:10000
KS ci ratio: 3.624798e-02	ci left: 5.291699e-01	ci right 5.488074e-01	k: 5390	n:10000
BTN2A1   10000 perm   2 sec   (6485 perm/sec)   p_kst 5.390000e-01   p_cons 7.288000e-01   p_joint 7.215000e-01

Outputting figure to mutsig2_images.part000000000018/BTN2A1.2_1639_10000_0.539_0.7288_0.7215.png
                gene_name: BTN2A1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 68 percent done.
BTNL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.637447e-02	ci left: 2.004751e-01	ci right 2.164950e-01	k: 2084	n:10000
Cons ci ratio: 8.646081e-02	ci left: 1.630776e-01	ci right 1.779148e-01	k: 1704	n:10000
KS ci ratio: 9.635428e-02	ci left: 1.351158e-01	ci right 1.488935e-01	k: 1419	n:10000
BTNL2   10000 perm   2 sec   (6646 perm/sec)   p_kst 1.419000e-01   p_cons 1.704000e-01   p_joint 2.084000e-01

Outputting figure to mutsig2_images.part000000000018/BTNL2.2_1392_10000_0.1419_0.1704_0.2084.png
                gene_name: BTNL2
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 71 percent done.
BUB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.989211e-03	ci left: 9.561821e-01	ci right 9.639469e-01	k: 9602	n:10000
Cons ci ratio: 4.005790e-02	ci left: 4.792569e-01	ci right 4.989495e-01	k: 4891	n:10000
KS ci ratio: 3.019958e-02	ci left: 6.179381e-01	ci right 6.369876e-01	k: 6275	n:10000
BUB3   10000 perm   2 sec   (6593 perm/sec)   p_kst 6.275000e-01   p_cons 4.891000e-01   p_joint 9.602000e-01

Outputting figure to mutsig2_images.part000000000018/BUB3.2_1029_10000_0.6275_0.4891_0.9602.png
                gene_name: BUB3
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.96 

Current progress: 73 percent done.
BVES
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.863342e-02	ci left: 2.997517e-01	ci right 3.179597e-01	k: 3088	n:10000
KS ci ratio: 1.195989e-01	ci left: 9.117000e-02	ci right 1.028660e-01	k: 969	n:10000
BVES   10000 perm   2 sec   (6433 perm/sec)   p_kst 9.690000e-02   p_cons 3.088000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 4.322400e-02	ci left: 2.850584e-01	ci right 2.977023e-01	k: 5827	n:20000
KS ci ratio: 8.394926e-02	ci left: 9.415843e-02	ci right 1.024588e-01	k: 1965	n:20000
BVES   20000 perm   4 sec   (5628 perm/sec)   p_kst 9.825000e-02   p_cons 2.913500e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000018/BVES.2_1111_20000_0.09825_0.29135_1.png
                gene_name: BVES
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.098 
        ci_ks_bounds_left: 0.094 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
BYSL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.547790e-02	ci left: 6.939360e-01	ci right 7.119456e-01	k: 7030	n:10000
KS ci ratio: 3.605879e-02	ci left: 5.317732e-01	ci right 5.514025e-01	k: 5416	n:10000
BYSL   10000 perm   2 sec   (6230 perm/sec)   p_kst 5.416000e-01   p_cons 7.030000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000018/BYSL.2_1342_10000_0.5416_0.703_1.png
                gene_name: BYSL
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
C10orf107
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.623340e-02	ci left: 5.293701e-01	ci right 5.490070e-01	k: 5392	n:10000
Cons ci ratio: 4.398338e-02	ci left: 4.328329e-01	ci right 4.524006e-01	k: 4426	n:10000
KS ci ratio: 6.068661e-02	ci left: 2.853789e-01	ci right 3.033411e-01	k: 2943	n:10000
C10orf107   10000 perm   1 sec   (6750 perm/sec)   p_kst 2.943000e-01   p_cons 4.426000e-01   p_joint 5.392000e-01

Outputting figure to mutsig2_images.part000000000018/C10orf107.2_651_10000_0.2943_0.4426_0.5392.png
                gene_name: C10orf107
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 80 percent done.
C10orf111
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.076409e-02	ci left: 6.091973e-01	ci right 6.283334e-01	k: 6188	n:10000
Cons ci ratio: 2.676571e-02	ci left: 6.727704e-01	ci right 6.911235e-01	k: 6820	n:10000
KS ci ratio: 5.057512e-02	ci left: 3.656978e-01	ci right 3.847749e-01	k: 3752	n:10000
C10orf111   10000 perm   1 sec   (7019 perm/sec)   p_kst 3.752000e-01   p_cons 6.820000e-01   p_joint 6.188000e-01

Outputting figure to mutsig2_images.part000000000018/C10orf111.2_472_10000_0.3752_0.682_0.6188.png
                gene_name: C10orf111
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 83 percent done.
C10orf120
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.930639e-02	ci left: 7.968933e-01	ci right 8.125288e-01	k: 8048	n:10000
KS ci ratio: 3.734125e-02	ci left: 5.143558e-01	ci right 5.340301e-01	k: 5242	n:10000
C10orf120   10000 perm   2 sec   (6604 perm/sec)   p_kst 5.242000e-01   p_cons 8.048000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000018/C10orf120.2_1020_10000_0.5242_0.8048_1.png
                gene_name: C10orf120
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 85 percent done.
C10orf140
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.056430e-03	ci left: 9.873032e-01	ci right 9.914042e-01	k: 9895	n:10000
Cons ci ratio: 2.732256e-02	ci left: 6.637061e-01	ci right 6.821931e-01	k: 6730	n:10000
KS ci ratio: 3.989796e-02	ci left: 4.812555e-01	ci right 5.009497e-01	k: 4911	n:10000
C10orf140   10000 perm   2 sec   (5759 perm/sec)   p_kst 4.911000e-01   p_cons 6.730000e-01   p_joint 9.895000e-01

Outputting figure to mutsig2_images.part000000000018/C10orf140.2_2731_10000_0.4911_0.673_0.9895.png
                gene_name: C10orf140
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 88 percent done.
C10orf46
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.792668e-02	ci left: 6.539410e-01	ci right 6.725638e-01	k: 6633	n:10000
Cons ci ratio: 5.479894e-02	ci left: 3.291243e-01	ci right 3.477699e-01	k: 3384	n:10000
KS ci ratio: 8.104105e-02	ci left: 1.818601e-01	ci right 1.973212e-01	k: 1895	n:10000
C10orf46   10000 perm   2 sec   (6206 perm/sec)   p_kst 1.895000e-01   p_cons 3.384000e-01   p_joint 6.633000e-01

Outputting figure to mutsig2_images.part000000000018/C10orf46.2_1146_10000_0.1895_0.3384_0.6633.png
                gene_name: C10orf46
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 90 percent done.
C10orf67
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.394965e-02	ci left: 1.714324e-01	ci right 1.865551e-01	k: 1789	n:10000
Cons ci ratio: 1.071676e-01	ci left: 1.116413e-01	ci right 1.243822e-01	k: 1179	n:10000
KS ci ratio: 1.038047e-01	ci left: 1.182847e-01	ci right 1.313348e-01	k: 1247	n:10000
C10orf67   10000 perm   1 sec   (6820 perm/sec)   p_kst 1.247000e-01   p_cons 1.179000e-01   p_joint 1.789000e-01

Joint ci ratio: 4.620989e-02	ci left: 2.584464e-01	ci right 2.707221e-01	k: 5291	n:20000
Cons ci ratio: 6.848561e-02	ci left: 1.359085e-01	ci right 1.455962e-01	k: 2814	n:20000
KS ci ratio: 7.300184e-02	ci left: 1.213813e-01	ci right 1.306278e-01	k: 2519	n:20000
C10orf67   20000 perm   3 sec   (5843 perm/sec)   p_kst 1.259500e-01   p_cons 1.407000e-01   p_joint 2.645500e-01

Outputting figure to mutsig2_images.part000000000018/C10orf67.2_578_20000_0.12595_0.1407_0.26455.png
                gene_name: C10orf67
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 93 percent done.
C10orf68
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.661919e-02	ci left: 4.044221e-01	ci right 4.238280e-01	k: 4141	n:10000
Cons ci ratio: 3.423800e-02	ci left: 5.574207e-01	ci right 5.769402e-01	k: 5672	n:10000
KS ci ratio: 1.326580e-01	ci left: 7.494951e-02	ci right 8.569647e-02	k: 802	n:10000
C10orf68   10000 perm   2 sec   (6146 perm/sec)   p_kst 8.020000e-02   p_cons 5.672000e-01   p_joint 4.141000e-01

Joint ci ratio: 3.393434e-02	ci left: 3.933500e-01	ci right 4.069791e-01	k: 8003	n:20000
Cons ci ratio: 2.442908e-02	ci left: 5.558916e-01	ci right 5.696901e-01	k: 11256	n:20000
KS ci ratio: 9.573051e-02	ci left: 7.363535e-02	ci right 8.108808e-02	k: 1546	n:20000
C10orf68   20000 perm   4 sec   (5339 perm/sec)   p_kst 7.730000e-02   p_cons 5.628000e-01   p_joint 4.001500e-01

Outputting figure to mutsig2_images.part000000000018/C10orf68.2_1967_20000_0.0773_0.5628_0.40015.png
                gene_name: C10orf68
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.077 
        ci_ks_bounds_left: 0.074 
       ci_ks_bounds_right: 0.081 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 95 percent done.
C10orf81
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.762664e-02	ci left: 5.105536e-01	ci right 5.302345e-01	k: 5204	n:10000
Cons ci ratio: 3.115002e-02	ci left: 6.032715e-01	ci right 6.224627e-01	k: 6129	n:10000
KS ci ratio: 3.168419e-02	ci left: 5.951385e-01	ci right 6.144005e-01	k: 6048	n:10000
C10orf81   10000 perm   1 sec   (6713 perm/sec)   p_kst 6.048000e-01   p_cons 6.129000e-01   p_joint 5.204000e-01

Outputting figure to mutsig2_images.part000000000018/C10orf81.2_1136_10000_0.6048_0.6129_0.5204.png
                gene_name: C10orf81
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 98 percent done.
C11orf2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.093572e-02	ci left: 1.822537e-01	ci right 1.977273e-01	k: 1899	n:10000
KS ci ratio: 3.033536e-02	ci left: 6.158280e-01	ci right 6.348989e-01	k: 6254	n:10000
C11orf2   10000 perm   2 sec   (5735 perm/sec)   p_kst 6.254000e-01   p_cons 1.899000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000018/C11orf2.2_2389_10000_0.6254_0.1899_1.png
                gene_name: C11orf2
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000018
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 18 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1535>
Subject: Job 8003891: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1535>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000019> was used as the working directory.
Started at Sun Nov 11 15:03:55 2012
Results reported at Sun Nov 11 15:11:12 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000019.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000019.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 19  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000019.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    571.88 sec.
    Max Memory :      4696 MB
    Max Swap   :      7093 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
19
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 19
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 19: processing genes 1629 - 1719
Calculating significance of each gene.
Using projection method.
1629	C11orf49	6.631986e-01
1630	C11orf51	1
1631	C11orf52	2.036676e-01
1632	C11orf53	1
1633	C11orf54	4.593540e-02
1634	C11orf57	1
1635	C11orf58	2.039616e-01
1636	C11orf59	1
1637	C11orf61	5.720757e-01
1638	C11orf63	7.448006e-01
1639	C11orf65	3.504099e-01
1640	C11orf66	1
1641	C11orf67	1
1642	C11orf68	1
1643	C11orf70	1.185819e-01
1644	C11orf71	1
1645	C11orf73	1
1646	C11orf74	1.762527e-01
1647	C11orf75	1
1648	C11orf80	2.170394e-01
1649	C11orf82	7.736823e-01
1650	C11orf83	1
1651	C11orf84	1
1652	C11orf85	1
1653	C11orf87	5.229190e-01
1654	C11orf88	1
1655	C11orf9	6.940649e-01
1656	C11orf92	1
1657	C11orf94	1
1658	C12orf10	1
1659	C12orf11	9.495662e-01
1660	C12orf12	4.468524e-01
1661	C12orf23	1
1662	C12orf24	1
1663	C12orf26	2.115437e-01
1664	C12orf29	1
1665	C12orf34	1
1666	C12orf35	9.959068e-01
1667	C12orf36	3.949848e-01
1668	C12orf39	2.664998e-01
1669	C12orf4	7.763903e-01
1670	C12orf40	2.904573e-02
1671	C12orf41	1.582592e-01
1672	C12orf42	1.895400e-01
1673	C12orf43	1.301884e-01
1674	C12orf44	1
1675	C12orf45	4.027261e-01
1676	C12orf48	3.448814e-02
1677	C12orf49	1
1678	C12orf5	1.925236e-01
1679	C12orf50	3.578514e-03
1680	C12orf51	9.999878e-01
1681	C12orf52	1
1682	C12orf53	1
1683	C12orf54	1
1684	C12orf56	1
1685	C12orf57	1
1686	C12orf59	7.731586e-02
1687	C12orf60	1
1688	C12orf61	9.104529e-02
1689	C12orf62	1
1690	C12orf63	7.902592e-02
1691	C12orf64	1
1692	C12orf65	3.761103e-01
1693	C12orf66	8.733592e-01
1694	C12orf68	1
1695	C12orf69	1
1696	C12orf71	4.800130e-01
1697	C12orf72	1
1698	C12orf74	4.700130e-01
1699	C12orf76	1
1700	C12orf77	4.042445e-01
1701	C13orf1	2.969920e-01
1702	C13orf15	1.081636e-01
1703	C13orf16	1
1704	C13orf18	3.381262e-01
1705	C13orf23	9.484737e-01
1706	C13orf26	3.989451e-01
1707	C13orf27	1
1708	C13orf28	1
1709	C13orf30	1.226187e-01
1710	C13orf31	1
1711	C13orf33	1
1712	C13orf34	7.616104e-01
1713	C13orf35	1
1714	C13orf36	1.351911e-01
1715	C13orf37	1
1716	C13orf39	1
1717	C14orf1	1
1718	C14orf101	8.047380e-01
1719	C14orf102	9.275028e-01
Done

Running MutSig 2:
Scatter job 19: processing genes 1629 - 1719
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
C12orf51
Processing conservation and coverage...
76% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.284305e-02	ci left: 4.458030e-01	ci right 4.654229e-01	k: 4556	n:10000
Cons ci ratio: 4.957627e-02	ci left: 3.750495e-01	ci right 3.942177e-01	k: 3846	n:10000
KS ci ratio: 6.169492e-02	ci left: 2.786422e-01	ci right 2.964817e-01	k: 2875	n:10000
C12orf51   10000 perm   5 sec   (2196 perm/sec)   p_kst 2.875000e-01   p_cons 3.846000e-01   p_joint 4.556000e-01

Outputting figure to mutsig2_images.part000000000019/C12orf51.13_13037_10000_0.2875_0.3846_0.4556.png
                gene_name: C12orf51
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 4 percent done.
C12orf63
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.503222e-02	ci left: 3.272376e-01	ci right 3.458577e-01	k: 3365	n:10000
Cons ci ratio: 4.363748e-02	ci left: 4.367232e-01	ci right 4.563080e-01	k: 4465	n:10000
KS ci ratio: 6.686115e-02	ci left: 2.471717e-01	ci right 2.643708e-01	k: 2557	n:10000
C12orf63   10000 perm   2 sec   (4145 perm/sec)   p_kst 2.557000e-01   p_cons 4.465000e-01   p_joint 3.365000e-01

Outputting figure to mutsig2_images.part000000000019/C12orf63.10_3698_10000_0.2557_0.4465_0.3365.png
                gene_name: C12orf63
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 7 percent done.
C12orf50
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.609721e-02	ci left: 2.515227e-01	ci right 2.688172e-01	k: 2601	n:10000
KS ci ratio: 1.339460e-02	ci left: 8.893387e-01	ci right 9.014299e-01	k: 8955	n:10000
C12orf50   10000 perm   2 sec   (5377 perm/sec)   p_kst 8.955000e-01   p_cons 2.601000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000019/C12orf50.7_1293_10000_0.8955_0.2601_1.png
                gene_name: C12orf50
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 11 percent done.
C12orf35
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.650805e-02	ci left: 8.422384e-01	ci right 8.563575e-01	k: 8494	n:10000
KS ci ratio: 1.966806e-02	ci left: 7.909075e-01	ci right 8.067181e-01	k: 7989	n:10000
C12orf35   10000 perm   3 sec   (3985 perm/sec)   p_kst 7.989000e-01   p_cons 8.494000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000019/C12orf35.6_5256_10000_0.7989_0.8494_1.png
                gene_name: C12orf35
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 14 percent done.
C12orf40
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.961298e-02	ci left: 7.918204e-01	ci right 8.076046e-01	k: 7998	n:10000
Cons ci ratio: 4.123801e-02	ci left: 4.647714e-01	ci right 4.844434e-01	k: 4746	n:10000
KS ci ratio: 1.930639e-02	ci left: 7.968933e-01	ci right 8.125288e-01	k: 8048	n:10000
C12orf40   10000 perm   2 sec   (5438 perm/sec)   p_kst 8.048000e-01   p_cons 4.746000e-01   p_joint 7.998000e-01

Outputting figure to mutsig2_images.part000000000019/C12orf40.6_2011_10000_0.8048_0.4746_0.7998.png
                gene_name: C12orf40
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 18 percent done.
C12orf48
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.196988e-02	ci left: 5.908220e-01	ci right 6.101194e-01	k: 6005	n:10000
Cons ci ratio: 8.673992e-03	ci left: 9.490847e-01	ci right 9.574486e-01	k: 9534	n:10000
KS ci ratio: 6.284356e-02	ci left: 2.712149e-01	ci right 2.889134e-01	k: 2800	n:10000
C12orf48   10000 perm   2 sec   (5678 perm/sec)   p_kst 2.800000e-01   p_cons 9.534000e-01   p_joint 6.005000e-01

Outputting figure to mutsig2_images.part000000000019/C12orf48.5_1533_10000_0.28_0.9534_0.6005.png
                gene_name: C12orf48
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 21 percent done.
C13orf23
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.647107e-01	ci left: 4.917009e-02	ci right 5.809220e-02	k: 535	n:10000
Cons ci ratio: 1.311543e-01	ci left: 7.659787e-02	ci right 8.744709e-02	k: 819	n:10000
KS ci ratio: 8.846994e-02	ci left: 1.567914e-01	ci right 1.714049e-01	k: 1640	n:10000
C13orf23   10000 perm   2 sec   (4833 perm/sec)   p_kst 1.640000e-01   p_cons 8.190000e-02   p_joint 5.350000e-02

Joint ci ratio: 9.647600e-02	ci left: 7.255975e-02	ci right 7.996401e-02	k: 1524	n:20000
Cons ci ratio: 9.866417e-02	ci left: 6.952973e-02	ci right 7.679495e-02	k: 1462	n:20000
KS ci ratio: 6.261571e-02	ci left: 1.586950e-01	ci right 1.690029e-01	k: 3276	n:20000
C13orf23   20000 perm   5 sec   (4306 perm/sec)   p_kst 1.638000e-01   p_cons 7.310000e-02   p_joint 7.620000e-02

Outputting figure to mutsig2_images.part000000000019/C13orf23.5_2887_20000_0.1638_0.0731_0.0762.png
                gene_name: C13orf23
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.073 
      ci_cons_bounds_left: 0.070 
     ci_cons_bounds_right: 0.077 
                  p_joint: 0.076 
     ci_joint_bounds_left: 0.073 
    ci_joint_bounds_right: 0.080 

Current progress: 25 percent done.
C11orf54
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.724812e-02	ci left: 6.649144e-01	ci right 6.833840e-01	k: 6742	n:10000
Cons ci ratio: 2.004063e-02	ci left: 7.847215e-01	ci right 8.007076e-01	k: 7928	n:10000
KS ci ratio: 3.834897e-02	ci left: 5.010505e-01	ci right 5.207431e-01	k: 5109	n:10000
C11orf54   10000 perm   2 sec   (6589 perm/sec)   p_kst 5.109000e-01   p_cons 7.928000e-01   p_joint 6.742000e-01

Outputting figure to mutsig2_images.part000000000019/C11orf54.4_826_10000_0.5109_0.7928_0.6742.png
                gene_name: C11orf54
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 29 percent done.
C11orf82
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.693146e-02	ci left: 2.467762e-01	ci right 2.639665e-01	k: 2553	n:10000
Cons ci ratio: 6.533341e-02	ci left: 2.559738e-01	ci right 2.733635e-01	k: 2646	n:10000
KS ci ratio: 6.614875e-02	ci left: 2.512260e-01	ci right 2.685141e-01	k: 2598	n:10000
C11orf82   10000 perm   2 sec   (5687 perm/sec)   p_kst 2.598000e-01   p_cons 2.646000e-01   p_joint 2.553000e-01

Outputting figure to mutsig2_images.part000000000019/C11orf82.4_3013_10000_0.2598_0.2646_0.2553.png
                gene_name: C11orf82
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 32 percent done.
C12orf26
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.553508e-02	ci left: 8.574316e-01	ci right 8.709555e-01	k: 8643	n:10000
KS ci ratio: 2.959539e-02	ci left: 6.273859e-01	ci right 6.463343e-01	k: 6369	n:10000
C12orf26   10000 perm   2 sec   (6001 perm/sec)   p_kst 6.369000e-01   p_cons 8.643000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000019/C12orf26.4_1860_10000_0.6369_0.8643_1.png
                gene_name: C12orf26
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 36 percent done.
C11orf80
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.438752e-02	ci left: 1.401132e-01	ci right 1.540931e-01	k: 1470	n:10000
Cons ci ratio: 8.732284e-03	ci left: 9.484598e-01	ci right 9.568740e-01	k: 9528	n:10000
KS ci ratio: 1.785097e-01	ci left: 4.188120e-02	ci right 5.018585e-02	k: 459	n:10000
C11orf80   10000 perm   2 sec   (5580 perm/sec)   p_kst 4.590000e-02   p_cons 9.528000e-01   p_joint 1.470000e-01

Joint ci ratio: 6.042364e-02	ci left: 1.685710e-01	ci right 1.791240e-01	k: 3476	n:20000
Cons ci ratio: 6.731132e-03	ci left: 9.410827e-01	ci right 9.474873e-01	k: 18887	n:20000
KS ci ratio: 1.253030e-01	ci left: 4.371988e-02	ci right 4.961282e-02	k: 932	n:20000
C11orf80   20000 perm   4 sec   (4972 perm/sec)   p_kst 4.660000e-02   p_cons 9.443500e-01   p_joint 1.738000e-01

Joint ci ratio: 6.572578e-02	ci left: 1.025053e-01	ci right 1.095045e-01	k: 3179	n:30000
Cons ci ratio: 5.443738e-03	ci left: 9.427008e-01	ci right 9.478792e-01	k: 28360	n:30000
KS ci ratio: 1.050768e-01	ci left: 4.199920e-02	ci right 4.668956e-02	k: 1329	n:30000
C11orf80   30000 perm   6 sec   (4714 perm/sec)   p_kst 4.430000e-02   p_cons 9.453333e-01   p_joint 1.059667e-01

Joint ci ratio: 4.416758e-02	ci left: 1.608789e-01	ci right 1.681699e-01	k: 6580	n:40000
Cons ci ratio: 4.701967e-03	ci left: 9.433323e-01	ci right 9.478027e-01	k: 37824	n:40000
KS ci ratio: 9.000385e-02	ci left: 4.323366e-02	ci right 4.733268e-02	k: 1810	n:40000
C11orf80   40000 perm   9 sec   (4570 perm/sec)   p_kst 4.525000e-02   p_cons 9.456000e-01   p_joint 1.645000e-01

Outputting figure to mutsig2_images.part000000000019/C11orf80.3_2102_40000_0.04525_0.9456_0.1645.png
                gene_name: C11orf80
               theta_stop: 0.090 
                    nperm: 40000 
                     p_ks: 0.045 
        ci_ks_bounds_left: 0.043 
       ci_ks_bounds_right: 0.047 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 39 percent done.
C11orf9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.231072e-02	ci left: 5.857036e-01	ci right 6.050408e-01	k: 5954	n:10000
KS ci ratio: 3.275514e-02	ci left: 5.790813e-01	ci right 5.984670e-01	k: 5888	n:10000
C11orf9   10000 perm   2 sec   (4887 perm/sec)   p_kst 5.888000e-01   p_cons 5.954000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000019/C11orf9.3_3590_10000_0.5888_0.5954_1.png
                gene_name: C11orf9
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 43 percent done.
C12orf41
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.441687e-02	ci left: 8.743904e-01	ci right 8.871869e-01	k: 8809	n:10000
KS ci ratio: 1.313571e-02	ci left: 8.930299e-01	ci right 9.049365e-01	k: 8991	n:10000
C12orf41   10000 perm   2 sec   (5723 perm/sec)   p_kst 8.991000e-01   p_cons 8.809000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000019/C12orf41.3_1515_10000_0.8991_0.8809_1.png
                gene_name: C12orf41
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 46 percent done.
C12orf42
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.009147e-01	ci left: 1.244452e-01	ci right 1.377705e-01	k: 1310	n:10000
Cons ci ratio: 1.964204e-01	ci left: 3.452820e-02	ci right 4.214376e-02	k: 382	n:10000
KS ci ratio: 2.142425e-02	ci left: 7.616239e-01	ci right 7.782186e-01	k: 7700	n:10000
C12orf42   10000 perm   2 sec   (6155 perm/sec)   p_kst 7.700000e-01   p_cons 3.820000e-02   p_joint 1.310000e-01

Joint ci ratio: 7.576212e-02	ci left: 1.135597e-01	ci right 1.225517e-01	k: 2360	n:20000
Cons ci ratio: 1.389877e-01	ci left: 3.558584e-02	ci right 4.094947e-02	k: 764	n:20000
KS ci ratio: 1.496952e-02	ci left: 7.683408e-01	ci right 7.799794e-01	k: 15484	n:20000
C12orf42   20000 perm   4 sec   (5404 perm/sec)   p_kst 7.742000e-01   p_cons 3.820000e-02   p_joint 1.180000e-01

Joint ci ratio: 6.269075e-02	ci left: 1.116737e-01	ci right 1.189343e-01	k: 3458	n:30000
Cons ci ratio: 1.138714e-01	ci left: 3.583221e-02	ci right 4.019118e-02	k: 1139	n:30000
KS ci ratio: 1.216778e-02	ci left: 7.710038e-01	ci right 7.804760e-01	k: 23273	n:30000
C12orf42   30000 perm   6 sec   (5127 perm/sec)   p_kst 7.757667e-01   p_cons 3.796667e-02   p_joint 1.152667e-01

Joint ci ratio: 5.202884e-02	ci left: 1.210322e-01	ci right 1.275224e-01	k: 4970	n:40000
Cons ci ratio: 9.915964e-02	ci left: 3.573254e-02	ci right 3.948497e-02	k: 1503	n:40000
KS ci ratio: 1.052068e-02	ci left: 7.722089e-01	ci right 7.804010e-01	k: 31053	n:40000
C12orf42   40000 perm   8 sec   (4944 perm/sec)   p_kst 7.763250e-01   p_cons 3.757500e-02   p_joint 1.242500e-01

Outputting figure to mutsig2_images.part000000000019/C12orf42.3_1103_40000_0.77633_0.037575_0.12425.png
                gene_name: C12orf42
               theta_stop: 0.099 
                    nperm: 40000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.038 
      ci_cons_bounds_left: 0.036 
     ci_cons_bounds_right: 0.039 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 50 percent done.
C13orf18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.945788e-03	ci left: 9.745067e-01	ci right 9.804106e-01	k: 9776	n:10000
Cons ci ratio: 1.947820e-02	ci left: 7.940522e-01	ci right 8.097715e-01	k: 8020	n:10000
KS ci ratio: 2.437178e-02	ci left: 7.122978e-01	ci right 7.299732e-01	k: 7212	n:10000
C13orf18   10000 perm   2 sec   (5566 perm/sec)   p_kst 7.212000e-01   p_cons 8.020000e-01   p_joint 9.776000e-01

Outputting figure to mutsig2_images.part000000000019/C13orf18.3_2041_10000_0.7212_0.802_0.9776.png
                gene_name: C13orf18
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 54 percent done.
C14orf101
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.435067e-02	ci left: 4.287437e-01	ci right 4.482921e-01	k: 4385	n:10000
KS ci ratio: 1.023915e-02	ci left: 9.312316e-01	ci right 9.409125e-01	k: 9362	n:10000
C14orf101   10000 perm   2 sec   (5368 perm/sec)   p_kst 9.362000e-01   p_cons 4.385000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000019/C14orf101.3_2188_10000_0.9362_0.4385_1.png
                gene_name: C14orf101
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 57 percent done.
C11orf58
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.090642e-02	ci left: 2.838926e-01	ci right 3.018282e-01	k: 2928	n:10000
Cons ci ratio: 4.948217e-02	ci left: 3.759451e-01	ci right 3.951216e-01	k: 3855	n:10000
KS ci ratio: 5.728790e-02	ci left: 3.096702e-01	ci right 3.280354e-01	k: 3188	n:10000
C11orf58   10000 perm   1 sec   (7276 perm/sec)   p_kst 3.188000e-01   p_cons 3.855000e-01   p_joint 2.928000e-01

Outputting figure to mutsig2_images.part000000000019/C11orf58.2_572_10000_0.3188_0.3855_0.2928.png
                gene_name: C11orf58
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 61 percent done.
C11orf61
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.756493e-02	ci left: 6.597794e-01	ci right 6.783220e-01	k: 6691	n:10000
KS ci ratio: 4.612326e-02	ci left: 4.096033e-01	ci right 4.290437e-01	k: 4193	n:10000
C11orf61   10000 perm   2 sec   (6336 perm/sec)   p_kst 4.193000e-01   p_cons 6.691000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000019/C11orf61.2_1540_10000_0.4193_0.6691_1.png
                gene_name: C11orf61
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 64 percent done.
C11orf63
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.825701e-02	ci left: 5.022507e-01	ci right 5.219422e-01	k: 5121	n:10000
KS ci ratio: 2.370625e-02	ci left: 7.234042e-01	ci right 7.408604e-01	k: 7322	n:10000
C11orf63   10000 perm   2 sec   (5645 perm/sec)   p_kst 7.322000e-01   p_cons 5.121000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000019/C11orf63.2_2433_10000_0.7322_0.5121_1.png
                gene_name: C11orf63
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
C11orf65
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.064286e-02	ci left: 7.746878e-01	ci right 7.909471e-01	k: 7829	n:10000
KS ci ratio: 1.441001e-02	ci left: 8.744927e-01	ci right 8.872845e-01	k: 8810	n:10000
C11orf65   10000 perm   1 sec   (7082 perm/sec)   p_kst 8.810000e-01   p_cons 7.829000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000019/C11orf65.2_974_10000_0.881_0.7829_1.png
                gene_name: C11orf65
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
C11orf70
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.512569e-01	ci left: 1.014137e-02	ci right 1.454954e-02	k: 122	n:10000
Cons ci ratio: 4.509198e-01	ci left: 5.814929e-03	ci right 9.281233e-03	k: 74	n:10000
KS ci ratio: 5.011454e-02	ci left: 3.699753e-01	ci right 3.890950e-01	k: 3795	n:10000
C11orf70   10000 perm   1 sec   (7145 perm/sec)   p_kst 3.795000e-01   p_cons 7.400000e-03   p_joint 1.220000e-02

Joint ci ratio: 2.095217e-01	ci left: 1.539613e-02	ci right 1.904617e-02	k: 343	n:20000
Cons ci ratio: 3.156909e-01	ci left: 6.443412e-03	ci right 8.902974e-03	k: 152	n:20000
KS ci ratio: 3.560979e-02	ci left: 3.705258e-01	ci right 3.840099e-01	k: 7545	n:20000
C11orf70   20000 perm   3 sec   (6132 perm/sec)   p_kst 3.772500e-01   p_cons 7.600000e-03   p_joint 1.715000e-02

Joint ci ratio: 1.697411e-01	ci left: 1.598253e-02	ci right 1.897863e-02	k: 523	n:30000
Cons ci ratio: 2.558043e-01	ci left: 6.773317e-03	ci right 8.790429e-03	k: 232	n:30000
KS ci ratio: 2.890683e-02	ci left: 3.745026e-01	ci right 3.855206e-01	k: 11400	n:30000
C11orf70   30000 perm   5 sec   (5759 perm/sec)   p_kst 3.800000e-01   p_cons 7.733333e-03   p_joint 1.743333e-02

Joint ci ratio: 1.147438e-01	ci left: 2.672103e-02	ci right 2.999792e-02	k: 1133	n:40000
Cons ci ratio: 2.239687e-01	ci left: 6.748716e-03	ci right 8.473923e-03	k: 303	n:40000
KS ci ratio: 2.494835e-02	ci left: 3.768606e-01	ci right 3.864066e-01	k: 15265	n:40000
C11orf70   40000 perm   7 sec   (5538 perm/sec)   p_kst 3.816250e-01   p_cons 7.575000e-03   p_joint 2.832500e-02

Joint ci ratio: 1.343548e-01	ci left: 1.561424e-02	ci right 1.788236e-02	k: 836	n:50000
Cons ci ratio: 2.041484e-01	ci left: 6.572555e-03	ci right 8.085491e-03	k: 365	n:50000
KS ci ratio: 2.244791e-02	ci left: 3.745652e-01	ci right 3.830889e-01	k: 18941	n:50000
C11orf70   50000 perm   9 sec   (5366 perm/sec)   p_kst 3.788200e-01   p_cons 7.300000e-03   p_joint 1.672000e-02

Joint ci ratio: 1.224877e-01	ci left: 1.575439e-02	ci right 1.782606e-02	k: 1006	n:60000
Cons ci ratio: 1.857658e-01	ci left: 6.682119e-03	ci right 8.066173e-03	k: 441	n:60000
KS ci ratio: 2.048434e-02	ci left: 3.751158e-01	ci right 3.828960e-01	k: 22740	n:60000
C11orf70   60000 perm   12 sec   (5210 perm/sec)   p_kst 3.790000e-01   p_cons 7.350000e-03   p_joint 1.676667e-02

Joint ci ratio: 1.131977e-01	ci left: 1.588862e-02	ci right 1.780888e-02	k: 1178	n:70000
Cons ci ratio: 1.702755e-01	ci left: 6.874200e-03	ci right 8.167126e-03	k: 525	n:70000
KS ci ratio: 1.895110e-02	ci left: 3.757463e-01	ci right 3.829495e-01	k: 26554	n:70000
C11orf70   70000 perm   14 sec   (5077 perm/sec)   p_kst 3.793429e-01   p_cons 7.500000e-03   p_joint 1.682857e-02

Joint ci ratio: 1.055063e-01	ci left: 1.606681e-02	ci right 1.786847e-02	k: 1356	n:80000
Cons ci ratio: 1.569464e-01	ci left: 7.129963e-03	ci right 8.356140e-03	k: 618	n:80000
KS ci ratio: 1.775095e-02	ci left: 3.753494e-01	ci right 3.820844e-01	k: 30297	n:80000
C11orf70   80000 perm   16 sec   (4954 perm/sec)   p_kst 3.787125e-01   p_cons 7.725000e-03   p_joint 1.695000e-02

Joint ci ratio: 9.955951e-02	ci left: 1.608961e-02	ci right 1.778618e-02	k: 1523	n:90000
Cons ci ratio: 1.487666e-01	ci left: 7.085775e-03	ci right 8.235188e-03	k: 688	n:90000
KS ci ratio: 1.673190e-02	ci left: 3.756514e-01	ci right 3.820009e-01	k: 34094	n:90000
C11orf70   90000 perm   19 sec   (4831 perm/sec)   p_kst 3.788222e-01   p_cons 7.644444e-03   p_joint 1.692222e-02

Joint ci ratio: 9.488845e-02	ci left: 1.598317e-02	ci right 1.758504e-02	k: 1677	n:100000
Cons ci ratio: 1.413704e-01	ci left: 7.090350e-03	ci right 8.178501e-03	k: 762	n:100000
KS ci ratio: 1.587136e-02	ci left: 3.758719e-01	ci right 3.818952e-01	k: 37888	n:100000
C11orf70   100000 perm   21 sec   (4720 perm/sec)   p_kst 3.788800e-01   p_cons 7.620000e-03   p_joint 1.677000e-02

Joint ci ratio: 9.109705e-02	ci left: 1.579985e-02	ci right 1.731670e-02	k: 1820	n:110000
Cons ci ratio: 1.358806e-01	ci left: 6.998617e-03	ci right 8.027605e-03	k: 825	n:110000
KS ci ratio: 1.514149e-02	ci left: 3.757414e-01	ci right 3.814832e-01	k: 41647	n:110000
C11orf70   110000 perm   24 sec   (4626 perm/sec)   p_kst 3.786091e-01   p_cons 7.500000e-03   p_joint 1.654545e-02

Joint ci ratio: 8.736529e-02	ci left: 1.577863e-02	ci right 1.722821e-02	k: 1979	n:120000
Cons ci ratio: 1.305411e-01	ci left: 6.971234e-03	ci right 7.952795e-03	k: 894	n:120000
KS ci ratio: 1.451337e-02	ci left: 3.753302e-01	ci right 3.808257e-01	k: 45369	n:120000
C11orf70   120000 perm   26 sec   (4536 perm/sec)   p_kst 3.780750e-01   p_cons 7.450000e-03   p_joint 1.649167e-02

Joint ci ratio: 8.387826e-02	ci left: 1.582954e-02	ci right 1.722291e-02	k: 2147	n:130000
Cons ci ratio: 1.249393e-01	ci left: 7.045620e-03	ci right 7.991932e-03	k: 976	n:130000
KS ci ratio: 1.393802e-02	ci left: 3.756396e-01	ci right 3.809197e-01	k: 49176	n:130000
C11orf70   130000 perm   29 sec   (4455 perm/sec)   p_kst 3.782769e-01   p_cons 7.507692e-03   p_joint 1.651538e-02

Joint ci ratio: 8.040810e-02	ci left: 1.602120e-02	ci right 1.737036e-02	k: 2336	n:140000
Cons ci ratio: 1.197741e-01	ci left: 7.137870e-03	ci right 8.054130e-03	k: 1062	n:140000
KS ci ratio: 1.343853e-02	ci left: 3.754733e-01	ci right 3.805603e-01	k: 52922	n:140000
C11orf70   140000 perm   32 sec   (4372 perm/sec)   p_kst 3.780143e-01   p_cons 7.585714e-03   p_joint 1.668571e-02

Joint ci ratio: 7.775949e-02	ci left: 1.601176e-02	ci right 1.731369e-02	k: 2498	n:150000
Cons ci ratio: 1.155559e-01	ci left: 7.173187e-03	ci right 8.059338e-03	k: 1141	n:150000
KS ci ratio: 1.298308e-02	ci left: 3.755519e-01	ci right 3.804662e-01	k: 56701	n:150000
C11orf70   150000 perm   35 sec   (4296 perm/sec)   p_kst 3.780067e-01   p_cons 7.606667e-03   p_joint 1.665333e-02

Joint ci ratio: 7.539970e-02	ci left: 1.598573e-02	ci right 1.724437e-02	k: 2657	n:160000
Cons ci ratio: 1.122181e-01	ci left: 7.143822e-03	ci right 7.999167e-03	k: 1210	n:160000
KS ci ratio: 1.257518e-02	ci left: 3.754671e-01	ci right 3.802248e-01	k: 60455	n:160000
C11orf70   160000 perm   38 sec   (4219 perm/sec)   p_kst 3.778437e-01   p_cons 7.562500e-03   p_joint 1.660625e-02

Joint ci ratio: 7.286204e-02	ci left: 1.613082e-02	ci right 1.735633e-02	k: 2845	n:170000
Cons ci ratio: 1.081369e-01	ci left: 7.255605e-03	ci right 8.090728e-03	k: 1303	n:170000
KS ci ratio: 1.220727e-02	ci left: 3.752477e-01	ci right 3.798624e-01	k: 64184	n:170000
C11orf70   170000 perm   41 sec   (4145 perm/sec)   p_kst 3.775529e-01   p_cons 7.664706e-03   p_joint 1.673529e-02

Joint ci ratio: 7.080216e-02	ci left: 1.615124e-02	ci right 1.734218e-02	k: 3013	n:180000
Cons ci ratio: 1.047355e-01	ci left: 7.317588e-03	ci right 8.131720e-03	k: 1389	n:180000
KS ci ratio: 1.185795e-02	ci left: 3.755261e-01	ci right 3.800112e-01	k: 67998	n:180000
C11orf70   180000 perm   44 sec   (4075 perm/sec)   p_kst 3.777667e-01   p_cons 7.716667e-03   p_joint 1.673889e-02

Joint ci ratio: 6.878683e-02	ci left: 1.622686e-02	ci right 1.738795e-02	k: 3192	n:190000
Cons ci ratio: 1.018450e-01	ci left: 7.342632e-03	ci right 8.135656e-03	k: 1469	n:190000
KS ci ratio: 1.154217e-02	ci left: 3.755666e-01	ci right 3.799318e-01	k: 71772	n:190000
C11orf70   190000 perm   47 sec   (4010 perm/sec)   p_kst 3.777474e-01   p_cons 7.731579e-03   p_joint 1.680000e-02

Joint ci ratio: 6.704565e-02	ci left: 1.624125e-02	ci right 1.737282e-02	k: 3360	n:200000
Cons ci ratio: 9.957046e-02	ci left: 7.306930e-03	ci right 8.077442e-03	k: 1537	n:200000
KS ci ratio: 1.125309e-02	ci left: 3.754896e-01	ci right 3.797439e-01	k: 75523	n:200000
C11orf70   200000 perm   51 sec   (3928 perm/sec)   p_kst 3.776150e-01   p_cons 7.685000e-03   p_joint 1.680000e-02

Outputting figure to mutsig2_images.part000000000019/C11orf70.2_714_200000_0.37761_0.007685_0.0168.png
                gene_name: C11orf70
               theta_stop: 0.100 
                    nperm: 200000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.0077 
      ci_cons_bounds_left: 0.0073 
     ci_cons_bounds_right: 0.0081 
                  p_joint: 0.017 
     ci_joint_bounds_left: 0.016 
    ci_joint_bounds_right: 0.017 

Current progress: 75 percent done.
C11orf74
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.108542e-02	ci left: 7.672937e-01	ci right 7.837455e-01	k: 7756	n:10000
Cons ci ratio: 1.237722e-02	ci left: 9.036042e-01	ci right 9.149561e-01	k: 9094	n:10000
KS ci ratio: 5.021042e-02	ci left: 3.690799e-01	ci right 3.881908e-01	k: 3786	n:10000
C11orf74   10000 perm   1 sec   (6870 perm/sec)   p_kst 3.786000e-01   p_cons 9.094000e-01   p_joint 7.756000e-01

Outputting figure to mutsig2_images.part000000000019/C11orf74.2_686_10000_0.3786_0.9094_0.7756.png
                gene_name: C11orf74
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 79 percent done.
C12orf12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.868280e-02	ci left: 2.371885e-01	ci right 2.541599e-01	k: 2456	n:10000
Cons ci ratio: 6.205820e-02	ci left: 2.762651e-01	ci right 2.940602e-01	k: 2851	n:10000
KS ci ratio: 6.784099e-02	ci left: 2.417346e-01	ci right 2.588111e-01	k: 2502	n:10000
C12orf12   10000 perm   2 sec   (6493 perm/sec)   p_kst 2.502000e-01   p_cons 2.851000e-01   p_joint 2.456000e-01

Outputting figure to mutsig2_images.part000000000019/C12orf12.2_1225_10000_0.2502_0.2851_0.2456.png
                gene_name: C12orf12
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 82 percent done.
C12orf43
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.758489e-02	ci left: 8.250345e-01	ci right 8.397713e-01	k: 8325	n:10000
Cons ci ratio: 3.969102e-02	ci left: 4.838540e-01	ci right 5.035497e-01	k: 4937	n:10000
KS ci ratio: 2.854796e-02	ci left: 6.439792e-01	ci right 6.627314e-01	k: 6534	n:10000
C12orf43   10000 perm   1 sec   (6798 perm/sec)   p_kst 6.534000e-01   p_cons 4.937000e-01   p_joint 8.325000e-01

Outputting figure to mutsig2_images.part000000000019/C12orf43.2_813_10000_0.6534_0.4937_0.8325.png
                gene_name: C12orf43
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 86 percent done.
C12orf5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.981450e-03	ci left: 9.815599e-01	ci right 9.865523e-01	k: 9842	n:10000
Cons ci ratio: 2.260762e-02	ci left: 7.417955e-01	ci right 7.588585e-01	k: 7504	n:10000
KS ci ratio: 7.428590e-02	ci left: 2.096447e-01	ci right 2.259200e-01	k: 2177	n:10000
C12orf5   10000 perm   1 sec   (6835 perm/sec)   p_kst 2.177000e-01   p_cons 7.504000e-01   p_joint 9.842000e-01

Outputting figure to mutsig2_images.part000000000019/C12orf5.2_837_10000_0.2177_0.7504_0.9842.png
                gene_name: C12orf5
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 89 percent done.
C12orf59
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.549380e-02	ci left: 1.372712e-01	ci right 1.511368e-01	k: 1441	n:10000
KS ci ratio: 2.393597e-02	ci left: 7.195667e-01	ci right 7.371001e-01	k: 7284	n:10000
C12orf59   10000 perm   1 sec   (7046 perm/sec)   p_kst 7.284000e-01   p_cons 1.441000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000019/C12orf59.2_508_10000_0.7284_0.1441_1.png
                gene_name: C12orf59
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
C13orf30
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.181098e-02	ci left: 7.551466e-01	ci right 7.718996e-01	k: 7636	n:10000
KS ci ratio: 2.208266e-02	ci left: 7.505939e-01	ci right 7.674550e-01	k: 7591	n:10000
C13orf30   10000 perm   1 sec   (7144 perm/sec)   p_kst 7.591000e-01   p_cons 7.636000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000019/C13orf30.2_432_10000_0.7591_0.7636_1.png
                gene_name: C13orf30
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
C14orf102
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.933874e-03	ci left: 9.462737e-01	ci right 9.548614e-01	k: 9507	n:10000
KS ci ratio: 1.952724e-02	ci left: 7.932406e-01	ci right 8.089836e-01	k: 8012	n:10000
C14orf102   10000 perm   2 sec   (5482 perm/sec)   p_kst 8.012000e-01   p_cons 9.507000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000019/C14orf102.2_3551_10000_0.8012_0.9507_1.png
                gene_name: C14orf102
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000019
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 19 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1650>
Subject: Job 8003894: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1650>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000020> was used as the working directory.
Started at Sun Nov 11 15:03:58 2012
Results reported at Sun Nov 11 15:09:52 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000020.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000020.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 20  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000020.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    385.86 sec.
    Max Memory :      4787 MB
    Max Swap   :      7116 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
20
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 20
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 20: processing genes 1720 - 1809
Calculating significance of each gene.
Using projection method.
1720	C14orf104	4.994464e-01
1721	C14orf105	2.857776e-01
1722	C14orf106	1
1723	C14orf109	1
1724	C14orf115	8.762575e-01
1725	C14orf118	8.238562e-01
1726	C14orf119	1
1727	C14orf126	1
1728	C14orf129	1
1729	C14orf135	1
1730	C14orf138	1
1731	C14orf142	1
1732	C14orf143	2.952062e-01
1733	C14orf145	2.768695e-01
1734	C14orf147	1
1735	C14orf148	1
1736	C14orf149	1
1737	C14orf153	1
1738	C14orf156	1
1739	C14orf159	1
1740	C14orf166	1
1741	C14orf166B	7.207789e-01
1742	C14orf169	5.475188e-01
1743	C14orf174	1
1744	C14orf177	8.124754e-03
1745	C14orf178	1.047452e-01
1746	C14orf179	5.534942e-02
1747	C14orf180	1
1748	C14orf181	1.838370e-01
1749	C14orf182	1
1750	C14orf183	1.225009e-01
1751	C14orf184	1
1752	C14orf2	1
1753	C14orf21	1
1754	C14orf28	4.779194e-01
1755	C14orf37	1.617714e-02
1756	C14orf39	6.162709e-01
1757	C14orf4	6.077736e-01
1758	C14orf43	9.703676e-01
1759	C14orf45	8.821654e-01
1760	C14orf49	4.251678e-01
1761	C14orf50	5.433228e-01
1762	C14orf68	2.295701e-01
1763	C14orf73	6.323940e-01
1764	C14orf79	1
1765	C14orf93	5.979506e-01
1766	C15orf17	1
1767	C15orf2	1
1768	C15orf23	6.154526e-01
1769	C15orf24	1.730737e-01
1770	C15orf26	1
1771	C15orf27	8.219299e-01
1772	C15orf29	1
1773	C15orf32	4.367061e-01
1774	C15orf33	6.251646e-02
1775	C15orf38	1
1776	C15orf39	9.673155e-01
1777	C15orf40	5.725873e-01
1778	C15orf41	1
1779	C15orf42	8.833089e-01
1780	C15orf43	1
1781	C15orf44	1
1782	C15orf48	1
1783	C15orf52	1
1784	C15orf53	2.949838e-01
1785	C15orf54	1
1786	C15orf55	3.898754e-01
1787	C15orf56	1
1788	C15orf57	5.574218e-01
1789	C15orf58	1
1790	C15orf59	4.231446e-01
1791	C15orf60	5.375612e-02
1792	C15orf63	2.562187e-01
1793	C16orf11	2.566430e-01
1794	C16orf13	1
1795	C16orf3	1.821055e-01
1796	C16orf42	1
1797	C16orf45	1
1798	C16orf46	4.513646e-01
1799	C16orf48	6.387353e-01
1800	C16orf5	1
1801	C16orf53	1
1802	C16orf54	7.572659e-02
1803	C16orf55	1
1804	C16orf57	5.359977e-02
1805	C16orf58	5.710014e-01
1806	C16orf59	1
1807	C16orf61	1
1808	C16orf62	5.126218e-01
1809	C16orf63	4.612046e-01
Done

Running MutSig 2:
Scatter job 20: processing genes 1720 - 1809
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
C15orf2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.477798e-02	ci left: 5.497037e-01	ci right 5.692617e-01	k: 5595	n:10000
Cons ci ratio: 1.338745e-02	ci left: 8.894412e-01	ci right 9.015273e-01	k: 8956	n:10000
KS ci ratio: 5.259752e-02	ci left: 3.476023e-01	ci right 3.664811e-01	k: 3570	n:10000
C15orf2   10000 perm   2 sec   (4614 perm/sec)   p_kst 3.570000e-01   p_cons 8.956000e-01   p_joint 5.595000e-01

Outputting figure to mutsig2_images.part000000000020/C15orf2.16_3475_10000_0.357_0.8956_0.5595.png
                gene_name: C15orf2
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 3 percent done.
C14orf37
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.822407e-02	ci left: 8.146643e-01	ci right 8.297475e-01	k: 8223	n:10000
Cons ci ratio: 2.511240e-02	ci left: 6.999874e-01	ci right 7.178907e-01	k: 7090	n:10000
KS ci ratio: 3.556785e-02	ci left: 5.385833e-01	ci right 5.581885e-01	k: 5484	n:10000
C14orf37   10000 perm   2 sec   (5200 perm/sec)   p_kst 5.484000e-01   p_cons 7.090000e-01   p_joint 8.223000e-01

Outputting figure to mutsig2_images.part000000000020/C14orf37.8_2353_10000_0.5484_0.709_0.8223.png
                gene_name: C14orf37
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 6 percent done.
C14orf145
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.761910e-02	ci left: 5.106536e-01	ci right 5.303344e-01	k: 5205	n:10000
Cons ci ratio: 8.639973e-02	ci left: 1.632741e-01	ci right 1.781182e-01	k: 1706	n:10000
KS ci ratio: 2.462640e-02	ci left: 7.080589e-01	ci right 7.258146e-01	k: 7170	n:10000
C14orf145   10000 perm   2 sec   (4875 perm/sec)   p_kst 7.170000e-01   p_cons 1.706000e-01   p_joint 5.205000e-01

Outputting figure to mutsig2_images.part000000000020/C14orf145.7_3377_10000_0.717_0.1706_0.5205.png
                gene_name: C14orf145
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 10 percent done.
C15orf42
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.769032e-01	ci left: 4.264711e-02	ci right 5.101943e-02	k: 467	n:10000
Cons ci ratio: 2.980694e-01	ci left: 1.446512e-02	ci right 1.962175e-02	k: 169	n:10000
KS ci ratio: 7.665324e-02	ci left: 1.992924e-01	ci right 2.152785e-01	k: 2072	n:10000
C15orf42   10000 perm   2 sec   (4742 perm/sec)   p_kst 2.072000e-01   p_cons 1.690000e-02   p_joint 4.670000e-02

Joint ci ratio: 1.704933e-01	ci left: 2.355113e-02	ci right 2.798821e-02	k: 514	n:20000
Cons ci ratio: 2.076863e-01	ci left: 1.568069e-02	ci right 1.936149e-02	k: 349	n:20000
KS ci ratio: 5.440136e-02	ci left: 2.004625e-01	ci right 2.117231e-01	k: 4121	n:20000
C15orf42   20000 perm   5 sec   (4262 perm/sec)   p_kst 2.060500e-01   p_cons 1.745000e-02   p_joint 2.570000e-02

Joint ci ratio: 1.296583e-01	ci left: 2.764661e-02	ci right 3.151188e-02	k: 886	n:30000
Cons ci ratio: 1.621863e-01	ci left: 1.754916e-02	ci right 2.067829e-02	k: 572	n:30000
KS ci ratio: 4.444134e-02	ci left: 2.013363e-01	ci right 2.105207e-01	k: 6177	n:30000
C15orf42   30000 perm   7 sec   (4070 perm/sec)   p_kst 2.059000e-01   p_cons 1.906667e-02   p_joint 2.953333e-02

Joint ci ratio: 1.086790e-01	ci left: 2.978556e-02	ci right 3.323290e-02	k: 1259	n:40000
Cons ci ratio: 1.390726e-01	ci left: 1.811911e-02	ci right 2.085128e-02	k: 778	n:40000
KS ci ratio: 3.859462e-02	ci left: 2.010528e-01	ci right 2.089901e-01	k: 8200	n:40000
C15orf42   40000 perm   10 sec   (3950 perm/sec)   p_kst 2.050000e-01   p_cons 1.945000e-02   p_joint 3.147500e-02

Joint ci ratio: 9.797911e-02	ci left: 2.949811e-02	ci right 3.255666e-02	k: 1550	n:50000
Cons ci ratio: 1.214197e-01	ci left: 1.917881e-02	ci right 2.167730e-02	k: 1020	n:50000
KS ci ratio: 3.434373e-02	ci left: 2.031379e-01	ci right 2.102562e-01	k: 10334	n:50000
C15orf42   50000 perm   13 sec   (3859 perm/sec)   p_kst 2.066800e-01   p_cons 2.040000e-02   p_joint 3.100000e-02

Joint ci ratio: 8.482903e-02	ci left: 3.290694e-02	ci right 3.583833e-02	k: 2061	n:60000
Cons ci ratio: 1.115962e-01	ci left: 1.902439e-02	ci right 2.128902e-02	k: 1208	n:60000
KS ci ratio: 3.133549e-02	ci left: 2.036149e-01	ci right 2.101135e-01	k: 12411	n:60000
C15orf42   60000 perm   16 sec   (3782 perm/sec)   p_kst 2.068500e-01   p_cons 2.013333e-02   p_joint 3.435000e-02

Joint ci ratio: 7.668508e-02	ci left: 3.460404e-02	ci right 3.737745e-02	k: 2518	n:70000
Cons ci ratio: 1.039022e-01	ci left: 1.889214e-02	ci right 2.097649e-02	k: 1394	n:70000
KS ci ratio: 2.896524e-02	ci left: 2.043731e-01	ci right 2.103940e-01	k: 14516	n:70000
C15orf42   70000 perm   19 sec   (3713 perm/sec)   p_kst 2.073714e-01   p_cons 1.991429e-02   p_joint 3.597143e-02

Joint ci ratio: 7.964897e-02	ci left: 2.821575e-02	ci right 3.056854e-02	k: 2350	n:80000
Cons ci ratio: 9.726288e-02	ci left: 1.893123e-02	ci right 2.087880e-02	k: 1591	n:80000
KS ci ratio: 2.712324e-02	ci left: 2.042218e-01	ci right 2.098495e-01	k: 16562	n:80000
C15orf42   80000 perm   22 sec   (3652 perm/sec)   p_kst 2.070250e-01   p_cons 1.988750e-02   p_joint 2.937500e-02

Outputting figure to mutsig2_images.part000000000020/C15orf42.6_5821_80000_0.20702_0.019887_0.029375.png
                gene_name: C15orf42
               theta_stop: 0.097 
                    nperm: 80000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.020 
      ci_cons_bounds_left: 0.019 
     ci_cons_bounds_right: 0.021 
                  p_joint: 0.029 
     ci_joint_bounds_left: 0.028 
    ci_joint_bounds_right: 0.031 

Current progress: 13 percent done.
C15orf55
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.689963e-02	ci left: 8.360254e-01	ci right 8.503741e-01	k: 8433	n:10000
Cons ci ratio: 1.102190e-02	ci left: 9.215196e-01	ci right 9.318302e-01	k: 9268	n:10000
KS ci ratio: 2.851646e-02	ci left: 6.444822e-01	ci right 6.632281e-01	k: 6539	n:10000
C15orf55   10000 perm   2 sec   (4845 perm/sec)   p_kst 6.539000e-01   p_cons 9.268000e-01   p_joint 8.433000e-01

Outputting figure to mutsig2_images.part000000000020/C15orf55.6_3427_10000_0.6539_0.9268_0.8433.png
                gene_name: C15orf55
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 16 percent done.
C14orf115
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.427985e-02	ci left: 5.568193e-01	ci right 5.763419e-01	k: 5666	n:10000
KS ci ratio: 2.359145e-02	ci left: 7.253233e-01	ci right 7.427402e-01	k: 7341	n:10000
C14orf115   10000 perm   2 sec   (5959 perm/sec)   p_kst 7.341000e-01   p_cons 5.666000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000020/C14orf115.5_2113_10000_0.7341_0.5666_1.png
                gene_name: C14orf115
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 19 percent done.
C14orf49
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.260847e-02	ci left: 9.004195e-01	ci right 9.119426e-01	k: 9063	n:10000
Cons ci ratio: 1.466295e-02	ci left: 8.707094e-01	ci right 8.836699e-01	k: 8773	n:10000
KS ci ratio: 2.130330e-02	ci left: 7.636486e-01	ci right 7.801928e-01	k: 7720	n:10000
C14orf49   10000 perm   2 sec   (5053 perm/sec)   p_kst 7.720000e-01   p_cons 8.773000e-01   p_joint 9.063000e-01

Outputting figure to mutsig2_images.part000000000020/C14orf49.5_2996_10000_0.772_0.8773_0.9063.png
                gene_name: C14orf49
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 23 percent done.
C15orf33
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.723287e-02	ci left: 1.606216e-01	ci right 1.753724e-01	k: 1679	n:10000
Cons ci ratio: 5.859226e-02	ci left: 3.000492e-01	ci right 3.182621e-01	k: 3091	n:10000
KS ci ratio: 9.884244e-02	ci left: 1.291424e-01	ci right 1.426705e-01	k: 1358	n:10000
C15orf33   10000 perm   2 sec   (5456 perm/sec)   p_kst 1.358000e-01   p_cons 3.091000e-01   p_joint 1.679000e-01

Outputting figure to mutsig2_images.part000000000020/C15orf33.5_1587_10000_0.1358_0.3091_0.1679.png
                gene_name: C15orf33
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.18 

Current progress: 26 percent done.
C14orf174
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.444763e-02	ci left: 5.544138e-01	ci right 5.739488e-01	k: 5642	n:10000
Cons ci ratio: 2.661776e-02	ci left: 6.751883e-01	ci right 6.935042e-01	k: 6844	n:10000
KS ci ratio: 5.796730e-02	ci left: 3.046112e-01	ci right 3.228974e-01	k: 3137	n:10000
C14orf174   10000 perm   2 sec   (5785 perm/sec)   p_kst 3.137000e-01   p_cons 6.844000e-01   p_joint 5.642000e-01

Outputting figure to mutsig2_images.part000000000020/C14orf174.4_2037_10000_0.3137_0.6844_0.5642.png
                gene_name: C14orf174
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 29 percent done.
C16orf62
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.216596e-02	ci left: 9.064824e-01	ci right 9.176761e-01	k: 9122	n:10000
KS ci ratio: 1.741446e-02	ci left: 8.277812e-01	ci right 8.424231e-01	k: 8352	n:10000
C16orf62   10000 perm   2 sec   (5136 perm/sec)   p_kst 8.352000e-01   p_cons 9.122000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000020/C16orf62.4_3016_10000_0.8352_0.9122_1.png
                gene_name: C16orf62
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 32 percent done.
C14orf166B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.751475e-02	ci left: 1.597376e-01	ci right 1.744569e-01	k: 1670	n:10000
Cons ci ratio: 1.010923e-01	ci left: 1.240539e-01	ci right 1.373620e-01	k: 1306	n:10000
KS ci ratio: 1.050588e-01	ci left: 1.157438e-01	ci right 1.286772e-01	k: 1221	n:10000
C14orf166B   10000 perm   2 sec   (6233 perm/sec)   p_kst 1.221000e-01   p_cons 1.306000e-01   p_joint 1.670000e-01

Joint ci ratio: 8.454669e-02	ci left: 9.293210e-02	ci right 1.011855e-01	k: 1940	n:20000
Cons ci ratio: 7.054046e-02	ci left: 1.290118e-01	ci right 1.384949e-01	k: 2674	n:20000
KS ci ratio: 7.384239e-02	ci left: 1.189210e-01	ci right 1.280888e-01	k: 2469	n:20000
C14orf166B   20000 perm   4 sec   (5391 perm/sec)   p_kst 1.234500e-01   p_cons 1.337000e-01   p_joint 9.700000e-02

Outputting figure to mutsig2_images.part000000000020/C14orf166B.3_1523_20000_0.12345_0.1337_0.097.png
                gene_name: C14orf166B
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.097 
     ci_joint_bounds_left: 0.093 
    ci_joint_bounds_right: 0.10 

Current progress: 35 percent done.
C14orf177
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.999280e-02	ci left: 2.901356e-01	ci right 3.081815e-01	k: 2991	n:10000
Cons ci ratio: 2.359749e-02	ci left: 7.252223e-01	ci right 7.426412e-01	k: 7340	n:10000
KS ci ratio: 9.345829e-02	ci left: 1.425640e-01	ci right 1.566408e-01	k: 1495	n:10000
C14orf177   10000 perm   2 sec   (5688 perm/sec)   p_kst 1.495000e-01   p_cons 7.340000e-01   p_joint 2.991000e-01

Outputting figure to mutsig2_images.part000000000020/C14orf177.3_386_10000_0.1495_0.734_0.2991.png
                gene_name: C14orf177
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 39 percent done.
C14orf179
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.581381e-02	ci left: 6.883905e-01	ci right 7.064943e-01	k: 6975	n:10000
Cons ci ratio: 7.355244e-02	ci left: 2.129985e-01	ci right 2.293642e-01	k: 2211	n:10000
KS ci ratio: 2.572211e-02	ci left: 6.899028e-01	ci right 7.079812e-01	k: 6990	n:10000
C14orf179   10000 perm   2 sec   (5120 perm/sec)   p_kst 6.990000e-01   p_cons 2.211000e-01   p_joint 6.975000e-01

Outputting figure to mutsig2_images.part000000000020/C14orf179.3_762_10000_0.699_0.2211_0.6975.png
                gene_name: C14orf179
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 42 percent done.
C15orf27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.637447e-02	ci left: 2.004751e-01	ci right 2.164950e-01	k: 2084	n:10000
Cons ci ratio: 1.595841e-01	ci left: 5.234307e-02	ci right 6.151717e-02	k: 568	n:10000
KS ci ratio: 2.976835e-02	ci left: 6.246718e-01	ci right 6.436500e-01	k: 6342	n:10000
C15orf27   10000 perm   2 sec   (4992 perm/sec)   p_kst 6.342000e-01   p_cons 5.680000e-02   p_joint 2.084000e-01

Joint ci ratio: 4.959707e-02	ci left: 2.320618e-01	ci right 2.439144e-01	k: 4759	n:20000
Cons ci ratio: 1.228373e-01	ci left: 4.546654e-02	ci right 5.146561e-02	k: 968	n:20000
KS ci ratio: 2.105718e-02	ci left: 6.273301e-01	ci right 6.407310e-01	k: 12681	n:20000
C15orf27   20000 perm   4 sec   (4933 perm/sec)   p_kst 6.340500e-01   p_cons 4.840000e-02   p_joint 2.379500e-01

Joint ci ratio: 4.329650e-02	ci left: 2.099324e-01	ci right 2.192563e-01	k: 6437	n:30000
Cons ci ratio: 9.917276e-02	ci left: 4.703999e-02	ci right 5.198105e-02	k: 1484	n:30000
KS ci ratio: 1.717054e-02	ci left: 6.291883e-01	ci right 6.401189e-01	k: 19040	n:30000
C15orf27   30000 perm   6 sec   (4902 perm/sec)   p_kst 6.346667e-01   p_cons 4.946667e-02   p_joint 2.145667e-01

Outputting figure to mutsig2_images.part000000000020/C15orf27.3_1636_30000_0.63467_0.049467_0.21457.png
                gene_name: C15orf27
               theta_stop: 0.099 
                    nperm: 30000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.049 
      ci_cons_bounds_left: 0.047 
     ci_cons_bounds_right: 0.052 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 45 percent done.
C15orf52
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.660918e-02	ci left: 3.148297e-01	ci right 3.332729e-01	k: 3240	n:10000
Cons ci ratio: 9.780389e-02	ci left: 1.315900e-01	ci right 1.452214e-01	k: 1383	n:10000
KS ci ratio: 5.759258e-02	ci left: 3.073885e-01	ci right 3.257185e-01	k: 3165	n:10000
C15orf52   10000 perm   2 sec   (6120 perm/sec)   p_kst 3.165000e-01   p_cons 1.383000e-01   p_joint 3.240000e-01

Outputting figure to mutsig2_images.part000000000020/C15orf52.3_1649_10000_0.3165_0.1383_0.324.png
                gene_name: C15orf52
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 48 percent done.
C15orf60
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.197654e-02	ci left: 5.907217e-01	ci right 6.100198e-01	k: 6004	n:10000
Cons ci ratio: 2.063679e-02	ci left: 7.747892e-01	ci right 7.910457e-01	k: 7830	n:10000
KS ci ratio: 4.948217e-02	ci left: 3.759451e-01	ci right 3.951216e-01	k: 3855	n:10000
C15orf60   10000 perm   2 sec   (6432 perm/sec)   p_kst 3.855000e-01   p_cons 7.830000e-01   p_joint 6.004000e-01

Outputting figure to mutsig2_images.part000000000020/C15orf60.3_825_10000_0.3855_0.783_0.6004.png
                gene_name: C15orf60
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 52 percent done.
C16orf57
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.113531e-03	ci left: 9.549276e-01	ci right 9.628022e-01	k: 9590	n:10000
KS ci ratio: 2.593006e-02	ci left: 6.864752e-01	ci right 7.046108e-01	k: 6956	n:10000
C16orf57   10000 perm   2 sec   (6211 perm/sec)   p_kst 6.956000e-01   p_cons 9.590000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000020/C16orf57.3_826_10000_0.6956_0.959_1.png
                gene_name: C16orf57
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 55 percent done.
C14orf104
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.325487e-02	ci left: 2.143797e-01	ci right 2.307822e-01	k: 2225	n:10000
Cons ci ratio: 7.979698e-02	ci left: 1.865851e-01	ci right 2.021934e-01	k: 1943	n:10000
KS ci ratio: 1.242219e-02	ci left: 9.029877e-01	ci right 9.143730e-01	k: 9088	n:10000
C14orf104   10000 perm   2 sec   (5844 perm/sec)   p_kst 9.088000e-01   p_cons 1.943000e-01   p_joint 2.225000e-01

Outputting figure to mutsig2_images.part000000000020/C14orf104.2_2526_10000_0.9088_0.1943_0.2225.png
                gene_name: C14orf104
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 58 percent done.
C14orf105
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.827759e-02	ci left: 2.393626e-01	ci right 2.563846e-01	k: 2478	n:10000
Cons ci ratio: 7.346716e-02	ci left: 2.133931e-01	ci right 2.297694e-01	k: 2215	n:10000
KS ci ratio: 8.181399e-02	ci left: 1.790063e-01	ci right 1.943767e-01	k: 1866	n:10000
C14orf105   10000 perm   2 sec   (6647 perm/sec)   p_kst 1.866000e-01   p_cons 2.215000e-01   p_joint 2.478000e-01

Outputting figure to mutsig2_images.part000000000020/C14orf105.2_915_10000_0.1866_0.2215_0.2478.png
                gene_name: C14orf105
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 61 percent done.
C14orf169
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.941686e-02	ci left: 1.539442e-01	ci right 1.684538e-01	k: 1611	n:10000
Cons ci ratio: 1.224866e-01	ci left: 8.718231e-02	ci right 9.865611e-02	k: 928	n:10000
KS ci ratio: 2.012596e-02	ci left: 7.833022e-01	ci right 7.993277e-01	k: 7914	n:10000
C14orf169   10000 perm   2 sec   (6081 perm/sec)   p_kst 7.914000e-01   p_cons 9.280000e-02   p_joint 1.611000e-01

Joint ci ratio: 7.822483e-02	ci left: 1.071696e-01	ci right 1.159437e-01	k: 2230	n:20000
Cons ci ratio: 8.600185e-02	ci left: 9.003879e-02	ci right 9.817966e-02	k: 1881	n:20000
KS ci ratio: 1.436881e-02	ci left: 7.824707e-01	ci right 7.938454e-01	k: 15764	n:20000
C14orf169   20000 perm   4 sec   (5421 perm/sec)   p_kst 7.882000e-01   p_cons 9.405000e-02   p_joint 1.115000e-01

Outputting figure to mutsig2_images.part000000000020/C14orf169.2_1929_20000_0.7882_0.09405_0.1115.png
                gene_name: C14orf169
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.094 
      ci_cons_bounds_left: 0.090 
     ci_cons_bounds_right: 0.098 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 65 percent done.
C14orf183
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.990962e-02	ci left: 6.224605e-01	ci right 6.414626e-01	k: 6320	n:10000
KS ci ratio: 5.107307e-03	ci left: 9.807002e-01	ci right 9.858126e-01	k: 9834	n:10000
C14orf183   10000 perm   1 sec   (6751 perm/sec)   p_kst 9.834000e-01   p_cons 6.320000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000020/C14orf183.2_994_10000_0.9834_0.632_1.png
                gene_name: C14orf183
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
C14orf39
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.321513e-02	ci left: 8.919018e-01	ci right 9.038653e-01	k: 8980	n:10000
KS ci ratio: 4.473089e-02	ci left: 4.245555e-01	ci right 4.440828e-01	k: 4343	n:10000
C14orf39   10000 perm   2 sec   (6074 perm/sec)   p_kst 4.343000e-01   p_cons 8.980000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000020/C14orf39.2_1832_10000_0.4343_0.898_1.png
                gene_name: C14orf39
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
C14orf4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.827121e-02	ci left: 6.484061e-01	ci right 6.671019e-01	k: 6578	n:10000
Cons ci ratio: 5.509389e-02	ci left: 3.267412e-01	ci right 3.453544e-01	k: 3360	n:10000
KS ci ratio: 4.665763e-02	ci left: 4.040236e-01	ci right 4.234267e-01	k: 4137	n:10000
C14orf4   10000 perm   2 sec   (6242 perm/sec)   p_kst 4.137000e-01   p_cons 3.360000e-01   p_joint 6.578000e-01

Outputting figure to mutsig2_images.part000000000020/C14orf4.2_2395_10000_0.4137_0.336_0.6578.png
                gene_name: C14orf4
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 74 percent done.
C14orf50
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.519381e-03	ci left: 9.901638e-01	ci right 9.937407e-01	k: 9921	n:10000
Cons ci ratio: 4.435967e-02	ci left: 4.286440e-01	ci right 4.481919e-01	k: 4384	n:10000
KS ci ratio: 4.523504e-02	ci left: 4.190720e-01	ci right 4.385695e-01	k: 4288	n:10000
C14orf50   10000 perm   1 sec   (6810 perm/sec)   p_kst 4.288000e-01   p_cons 4.384000e-01   p_joint 9.921000e-01

Outputting figure to mutsig2_images.part000000000020/C14orf50.2_1317_10000_0.4288_0.4384_0.9921.png
                gene_name: C14orf50
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 77 percent done.
C14orf68
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.541190e-03	ci left: 9.775957e-01	ci right 9.831195e-01	k: 9805	n:10000
Cons ci ratio: 3.913930e-02	ci left: 4.908512e-01	ci right 5.105484e-01	k: 5007	n:10000
KS ci ratio: 6.075972e-02	ci left: 2.848834e-01	ci right 3.028368e-01	k: 2938	n:10000
C14orf68   10000 perm   1 sec   (6953 perm/sec)   p_kst 2.938000e-01   p_cons 5.007000e-01   p_joint 9.805000e-01

Outputting figure to mutsig2_images.part000000000020/C14orf68.2_951_10000_0.2938_0.5007_0.9805.png
                gene_name: C14orf68
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 81 percent done.
C14orf93
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.513262e-02	ci left: 2.571609e-01	ci right 2.745757e-01	k: 2658	n:10000
Cons ci ratio: 1.023114e-01	ci left: 1.214132e-01	ci right 1.346043e-01	k: 1279	n:10000
KS ci ratio: 2.743868e-01	ci left: 1.725330e-02	ci right 2.283124e-02	k: 199	n:10000
C14orf93   10000 perm   2 sec   (6555 perm/sec)   p_kst 1.990000e-02   p_cons 1.279000e-01   p_joint 2.658000e-01

Joint ci ratio: 6.661047e-02	ci left: 1.426613e-01	ci right 1.525414e-01	k: 2951	n:20000
Cons ci ratio: 7.357079e-02	ci left: 1.197082e-01	ci right 1.289013e-01	k: 2485	n:20000
KS ci ratio: 1.950228e-01	ci left: 1.786671e-02	ci right 2.177465e-02	k: 395	n:20000
C14orf93   20000 perm   3 sec   (5775 perm/sec)   p_kst 1.975000e-02   p_cons 1.242500e-01   p_joint 1.475500e-01

Joint ci ratio: 5.655536e-02	ci left: 1.341157e-01	ci right 1.419546e-01	k: 4140	n:30000
Cons ci ratio: 6.061954e-02	ci left: 1.186126e-01	ci right 1.260607e-01	k: 3669	n:30000
KS ci ratio: 1.613273e-01	ci left: 1.774120e-02	ci right 2.088620e-02	k: 578	n:30000
C14orf93   30000 perm   6 sec   (5454 perm/sec)   p_kst 1.926667e-02   p_cons 1.223000e-01   p_joint 1.380000e-01

Joint ci ratio: 6.436827e-02	ci left: 8.211227e-02	ci right 8.759817e-02	k: 3393	n:40000
Cons ci ratio: 5.256760e-02	ci left: 1.188324e-01	ci right 1.252726e-01	k: 4881	n:40000
KS ci ratio: 1.417882e-01	ci left: 1.741914e-02	ci right 2.010137e-02	k: 749	n:40000
C14orf93   40000 perm   8 sec   (5253 perm/sec)   p_kst 1.872500e-02   p_cons 1.220250e-01   p_joint 8.482500e-02

Joint ci ratio: 5.715795e-02	ci left: 8.351715e-02	ci right 8.845104e-02	k: 4298	n:50000
Cons ci ratio: 4.713462e-02	ci left: 1.186484e-01	ci right 1.243957e-01	k: 6075	n:50000
KS ci ratio: 1.265789e-01	ci left: 1.762752e-02	ci right 2.002880e-02	k: 940	n:50000
C14orf93   50000 perm   10 sec   (5096 perm/sec)   p_kst 1.880000e-02   p_cons 1.215000e-01   p_joint 8.596000e-02

Joint ci ratio: 5.356909e-02	ci left: 7.973427e-02	ci right 8.413960e-02	k: 4915	n:60000
Cons ci ratio: 4.289471e-02	ci left: 1.195563e-01	ci right 1.248136e-01	k: 7330	n:60000
KS ci ratio: 1.162448e-01	ci left: 1.751774e-02	ci right 1.969584e-02	k: 1115	n:60000
C14orf93   60000 perm   12 sec   (4966 perm/sec)   p_kst 1.858333e-02   p_cons 1.221667e-01   p_joint 8.191667e-02

Joint ci ratio: 3.662809e-02	ci left: 1.380327e-01	ci right 1.431971e-01	k: 9842	n:70000
Cons ci ratio: 3.963850e-02	ci left: 1.201506e-01	ci right 1.250236e-01	k: 8580	n:70000
KS ci ratio: 1.078331e-01	ci left: 1.752853e-02	ci right 1.954023e-02	k: 1296	n:70000
C14orf93   70000 perm   14 sec   (4852 perm/sec)   p_kst 1.851429e-02   p_cons 1.225714e-01   p_joint 1.406000e-01

Joint ci ratio: 3.468726e-02	ci left: 1.352695e-01	ci right 1.400568e-01	k: 11012	n:80000
Cons ci ratio: 3.713426e-02	ci left: 1.199875e-01	ci right 1.245399e-01	k: 9780	n:80000
KS ci ratio: 1.020064e-01	ci left: 1.719965e-02	ci right 1.906053e-02	k: 1449	n:80000
C14orf93   80000 perm   17 sec   (4729 perm/sec)   p_kst 1.811250e-02   p_cons 1.222500e-01   p_joint 1.376500e-01

Joint ci ratio: 3.847477e-02	ci left: 1.014180e-01	ci right 1.054076e-01	k: 9306	n:90000
Cons ci ratio: 3.500442e-02	ci left: 1.201551e-01	ci right 1.244470e-01	k: 11006	n:90000
KS ci ratio: 9.585149e-02	ci left: 1.736923e-02	ci right 1.912869e-02	k: 1641	n:90000
C14orf93   90000 perm   19 sec   (4631 perm/sec)   p_kst 1.823333e-02   p_cons 1.222889e-01   p_joint 1.034000e-01

Outputting figure to mutsig2_images.part000000000020/C14orf93.2_1641_90000_0.018233_0.12229_0.1034.png
                gene_name: C14orf93
               theta_stop: 0.096 
                    nperm: 90000 
                     p_ks: 0.018 
        ci_ks_bounds_left: 0.017 
       ci_ks_bounds_right: 0.019 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 84 percent done.
C15orf24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.783900e-02	ci left: 1.943656e-01	ci right 2.102082e-01	k: 2022	n:10000
Cons ci ratio: 2.073996e-02	ci left: 7.730669e-01	ci right 7.893690e-01	k: 7813	n:10000
KS ci ratio: 8.106743e-02	ci left: 1.817616e-01	ci right 1.972197e-01	k: 1894	n:10000
C15orf24   10000 perm   1 sec   (7101 perm/sec)   p_kst 1.894000e-01   p_cons 7.813000e-01   p_joint 2.022000e-01

Outputting figure to mutsig2_images.part000000000020/C15orf24.2_749_10000_0.1894_0.7813_0.2022.png
                gene_name: C15orf24
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 87 percent done.
C15orf41
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.263071e-02	ci left: 9.001114e-01	ci right 9.116509e-01	k: 9060	n:10000
Cons ci ratio: 1.335166e-02	ci left: 8.899537e-01	ci right 9.020145e-01	k: 8961	n:10000
KS ci ratio: 2.301068e-01	ci left: 2.494902e-02	ci right 3.152965e-02	k: 281	n:10000
C15orf41   10000 perm   3 sec   (3817 perm/sec)   p_kst 2.810000e-02   p_cons 8.961000e-01   p_joint 9.060000e-01

Joint ci ratio: 3.538353e-02	ci left: 3.735150e-01	ci right 3.870199e-01	k: 7605	n:20000
Cons ci ratio: 9.287003e-03	ci left: 8.948425e-01	ci right 9.032411e-01	k: 17982	n:20000
KS ci ratio: 1.528191e-01	ci left: 2.941145e-02	ci right 3.432589e-02	k: 636	n:20000
C15orf41   20000 perm   5 sec   (4290 perm/sec)   p_kst 3.180000e-02   p_cons 8.991000e-01   p_joint 3.802500e-01

Joint ci ratio: 2.923676e-02	ci left: 3.691851e-01	ci right 3.801725e-01	k: 11240	n:30000
Cons ci ratio: 7.571294e-03	ci left: 8.959069e-01	ci right 9.027488e-01	k: 26981	n:30000
KS ci ratio: 1.259045e-01	ci left: 2.932611e-02	ci right 3.329867e-02	k: 938	n:30000
C15orf41   30000 perm   7 sec   (4538 perm/sec)   p_kst 3.126667e-02   p_cons 8.993667e-01   p_joint 3.746667e-01

Joint ci ratio: 2.501986e-02	ci left: 3.755140e-01	ci right 3.850534e-01	k: 15211	n:40000
Cons ci ratio: 6.624169e-03	ci left: 8.944863e-01	ci right 9.004559e-01	k: 35900	n:40000
KS ci ratio: 1.090819e-01	ci left: 2.956650e-02	ci right 3.300199e-02	k: 1250	n:40000
C15orf41   40000 perm   9 sec   (4610 perm/sec)   p_kst 3.125000e-02   p_cons 8.975000e-01   p_joint 3.802750e-01

Joint ci ratio: 2.368809e-02	ci left: 3.496673e-01	ci right 3.580696e-01	k: 17693	n:50000
Cons ci ratio: 5.931190e-03	ci left: 8.946061e-01	ci right 8.999477e-01	k: 44865	n:50000
KS ci ratio: 9.814249e-02	ci left: 2.940049e-02	ci right 3.245429e-02	k: 1545	n:50000
C15orf41   50000 perm   11 sec   (4639 perm/sec)   p_kst 3.090000e-02   p_cons 8.973000e-01   p_joint 3.538600e-01

Outputting figure to mutsig2_images.part000000000020/C15orf41.2_890_50000_0.0309_0.8973_0.35386.png
                gene_name: C15orf41
               theta_stop: 0.098 
                    nperm: 50000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 90 percent done.
C15orf59
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.123801e-02	ci left: 4.647714e-01	ci right 4.844434e-01	k: 4746	n:10000
Cons ci ratio: 1.463924e-01	ci left: 6.198316e-02	ci right 7.187095e-02	k: 668	n:10000
KS ci ratio: 7.122053e-02	ci left: 2.241507e-01	ci right 2.408054e-01	k: 2324	n:10000
C15orf59   10000 perm   2 sec   (6665 perm/sec)   p_kst 2.324000e-01   p_cons 6.680000e-02   p_joint 4.746000e-01

Joint ci ratio: 2.838981e-02	ci left: 4.810496e-01	ci right 4.949538e-01	k: 9760	n:20000
Cons ci ratio: 1.017359e-01	ci left: 6.557403e-02	ci right 7.265187e-02	k: 1381	n:20000
KS ci ratio: 5.002470e-02	ci left: 2.289890e-01	ci right 2.407882e-01	k: 4697	n:20000
C15orf59   20000 perm   3 sec   (5918 perm/sec)   p_kst 2.348500e-01   p_cons 6.905000e-02   p_joint 4.880000e-01

Joint ci ratio: 2.314062e-02	ci left: 4.831948e-01	ci right 4.945407e-01	k: 14666	n:30000
Cons ci ratio: 8.923694e-02	ci left: 5.773026e-02	ci right 6.315525e-02	k: 1812	n:30000
KS ci ratio: 4.060044e-02	ci left: 2.322301e-01	ci right 2.418875e-01	k: 7111	n:30000
C15orf59   30000 perm   6 sec   (5378 perm/sec)   p_kst 2.370333e-01   p_cons 6.040000e-02   p_joint 4.888667e-01

Outputting figure to mutsig2_images.part000000000020/C15orf59.2_890_30000_0.23703_0.0604_0.48887.png
                gene_name: C15orf59
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.060 
      ci_cons_bounds_left: 0.058 
     ci_cons_bounds_right: 0.063 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.49 

Current progress: 94 percent done.
C16orf11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.980258e-02	ci left: 7.886762e-01	ci right 8.045507e-01	k: 7967	n:10000
KS ci ratio: 1.719903e-02	ci left: 8.312409e-01	ci right 8.457613e-01	k: 8386	n:10000
C16orf11   10000 perm   2 sec   (5945 perm/sec)   p_kst 8.386000e-01   p_cons 7.967000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000020/C16orf11.2_1724_10000_0.8386_0.7967_1.png
                gene_name: C16orf11
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
C16orf46
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.407617e-03	ci left: 9.518996e-01	ci right 9.600321e-01	k: 9561	n:10000
Cons ci ratio: 6.748669e-03	ci left: 9.678372e-01	ci right 9.744845e-01	k: 9713	n:10000
KS ci ratio: 4.279128e-02	ci left: 4.464018e-01	ci right 4.660237e-01	k: 4562	n:10000
C16orf46   10000 perm   2 sec   (5725 perm/sec)   p_kst 4.562000e-01   p_cons 9.713000e-01   p_joint 9.561000e-01

Outputting figure to mutsig2_images.part000000000020/C16orf46.2_1224_10000_0.4562_0.9713_0.9561.png
                gene_name: C16orf46
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000020
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 20 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1548>
Subject: Job 8003898: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1548>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000021> was used as the working directory.
Started at Sun Nov 11 15:04:01 2012
Results reported at Sun Nov 11 15:09:47 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000021.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000021.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 21  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000021.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    420.88 sec.
    Max Memory :      4795 MB
    Max Swap   :      7236 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
21
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 21
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 21: processing genes 1810 - 1900
Calculating significance of each gene.
Using projection method.
1810	C16orf68	5.712518e-01
1811	C16orf7	7.707040e-01
1812	C16orf70	1
1813	C16orf71	1
1814	C16orf72	1
1815	C16orf73	3.458055e-01
1816	C16orf75	1
1817	C16orf78	1.894483e-01
1818	C16orf79	6.455772e-01
1819	C16orf80	1
1820	C16orf82	1.498404e-01
1821	C16orf86	1.872524e-01
1822	C16orf87	1
1823	C16orf88	2.244633e-01
1824	C16orf89	8.627567e-01
1825	C16orf90	2.636146e-01
1826	C16orf91	7.990486e-01
1827	C16orf92	2.961297e-01
1828	C16orf93	3.227580e-01
1829	C17orf100	1
1830	C17orf101	4.461932e-01
1831	C17orf102	2.810926e-01
1832	C17orf103	1
1833	C17orf104	5.048936e-01
1834	C17orf108	1
1835	C17orf28	1
1836	C17orf37	2.014459e-01
1837	C17orf39	1
1838	C17orf42	7.873990e-01
1839	C17orf46	1
1840	C17orf47	9.261214e-01
1841	C17orf48	1
1842	C17orf49	1
1843	C17orf50	1
1844	C17orf53	9.317088e-01
1845	C17orf55	1
1846	C17orf56	4.590640e-01
1847	C17orf57	3.507010e-01
1848	C17orf58	1
1849	C17orf59	4.784030e-01
1850	C17orf60	1
1851	C17orf61	1
1852	C17orf62	1
1853	C17orf63	9.913577e-02
1854	C17orf64	1
1855	C17orf65	1
1856	C17orf66	4.068934e-01
1857	C17orf67	1
1858	C17orf68	9.895605e-01
1859	C17orf70	1
1860	C17orf71	7.224027e-01
1861	C17orf74	7.987581e-01
1862	C17orf75	1
1863	C17orf76	1
1864	C17orf77	1
1865	C17orf78	1
1866	C17orf79	1
1867	C17orf80	8.853429e-01
1868	C17orf81	5.865015e-01
1869	C17orf82	2.303114e-01
1870	C17orf85	5.133467e-01
1871	C17orf87	1
1872	C17orf90	3.807152e-01
1873	C17orf95	1
1874	C17orf98	1
1875	C18orf1	4.051813e-01
1876	C18orf10	7.168298e-01
1877	C18orf19	1
1878	C18orf21	1
1879	C18orf22	1
1880	C18orf25	8.220078e-01
1881	C18orf26	5.777152e-01
1882	C18orf32	1
1883	C18orf34	1.359633e-01
1884	C18orf45	1
1885	C18orf54	4.963204e-01
1886	C18orf55	5.319822e-02
1887	C18orf56	1
1888	C18orf62	2.296384e-01
1889	C18orf8	1
1890	C19orf10	1
1891	C19orf12	1
1892	C19orf18	5.104053e-01
1893	C19orf2	4.233902e-02
1894	C19orf21	8.585394e-01
1895	C19orf22	1
1896	C19orf26	1.154630e-01
1897	C19orf28	1
1898	C19orf29	1
1899	C19orf33	1
1900	C19orf35	5.330351e-02
Done

Running MutSig 2:
Scatter job 21: processing genes 1810 - 1900
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
C18orf34
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.107132e-02	ci left: 6.044766e-01	ci right 6.236569e-01	k: 6141	n:10000
Cons ci ratio: 7.485738e-02	ci left: 2.070805e-01	ci right 2.232857e-01	k: 2151	n:10000
KS ci ratio: 3.297882e-02	ci left: 5.757708e-01	ci right 5.951794e-01	k: 5855	n:10000
C18orf34   10000 perm   2 sec   (4385 perm/sec)   p_kst 5.855000e-01   p_cons 2.151000e-01   p_joint 6.141000e-01

Outputting figure to mutsig2_images.part000000000021/C18orf34.7_2688_10000_0.5855_0.2151_0.6141.png
                gene_name: C18orf34
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 5 percent done.
C17orf57
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.193174e-02	ci left: 7.531230e-01	ci right 7.699244e-01	k: 7616	n:10000
Cons ci ratio: 4.777161e-02	ci left: 3.926687e-01	ci right 4.119882e-01	k: 4023	n:10000
KS ci ratio: 1.266032e-02	ci left: 8.997006e-01	ci right 9.112619e-01	k: 9056	n:10000
C17orf57   10000 perm   2 sec   (4896 perm/sec)   p_kst 9.056000e-01   p_cons 4.023000e-01   p_joint 7.616000e-01

Outputting figure to mutsig2_images.part000000000021/C17orf57.5_3010_10000_0.9056_0.4023_0.7616.png
                gene_name: C17orf57
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 11 percent done.
C17orf66
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.054868e-02	ci left: 2.275079e-01	ci right 2.442463e-01	k: 2358	n:10000
Cons ci ratio: 4.193059e-02	ci left: 4.564835e-01	ci right 4.761362e-01	k: 4663	n:10000
KS ci ratio: 1.239631e-01	ci left: 8.523830e-02	ci right 9.660131e-02	k: 908	n:10000
C17orf66   10000 perm   2 sec   (5117 perm/sec)   p_kst 9.080000e-02   p_cons 4.663000e-01   p_joint 2.358000e-01

Joint ci ratio: 6.188320e-02	ci left: 1.619040e-01	ci right 1.722930e-01	k: 3341	n:20000
Cons ci ratio: 2.952110e-02	ci left: 4.615642e-01	ci right 4.754449e-01	k: 9370	n:20000
KS ci ratio: 8.813772e-02	ci left: 8.601960e-02	ci right 9.400006e-02	k: 1799	n:20000
C17orf66   20000 perm   4 sec   (4584 perm/sec)   p_kst 8.995000e-02   p_cons 4.685000e-01   p_joint 1.670500e-01

Outputting figure to mutsig2_images.part000000000021/C17orf66.5_1773_20000_0.08995_0.4685_0.16705.png
                gene_name: C17orf66
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.090 
        ci_ks_bounds_left: 0.086 
       ci_ks_bounds_right: 0.094 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 16 percent done.
C18orf1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.327177e-02	ci left: 5.714578e-01	ci right 5.908949e-01	k: 5812	n:10000
KS ci ratio: 2.225164e-02	ci left: 7.477617e-01	ci right 7.646888e-01	k: 7563	n:10000
C18orf1   10000 perm   2 sec   (5912 perm/sec)   p_kst 7.563000e-01   p_cons 5.812000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000021/C18orf1.5_1022_10000_0.7563_0.5812_1.png
                gene_name: C18orf1
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 21 percent done.
C19orf2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.042345e-01	ci left: 1.174050e-01	ci right 1.304149e-01	k: 1238	n:10000
Cons ci ratio: 5.404887e-02	ci left: 3.352819e-01	ci right 3.540087e-01	k: 3446	n:10000
KS ci ratio: 1.202174e-01	ci left: 9.029438e-02	ci right 1.019421e-01	k: 960	n:10000
C19orf2   10000 perm   2 sec   (5211 perm/sec)   p_kst 9.600000e-02   p_cons 3.446000e-01   p_joint 1.238000e-01

Joint ci ratio: 9.542997e-02	ci left: 7.407543e-02	ci right 8.154786e-02	k: 1555	n:20000
Cons ci ratio: 3.815491e-02	ci left: 3.388079e-01	ci right 3.520371e-01	k: 6908	n:20000
KS ci ratio: 8.590112e-02	ci left: 9.023491e-02	ci right 9.838348e-02	k: 1885	n:20000
C19orf2   20000 perm   4 sec   (4646 perm/sec)   p_kst 9.425000e-02   p_cons 3.454000e-01   p_joint 7.775000e-02

Outputting figure to mutsig2_images.part000000000021/C19orf2.5_1652_20000_0.09425_0.3454_0.07775.png
                gene_name: C19orf2
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.094 
        ci_ks_bounds_left: 0.090 
       ci_ks_bounds_right: 0.098 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.078 
     ci_joint_bounds_left: 0.074 
    ci_joint_bounds_right: 0.082 

Current progress: 26 percent done.
C16orf88
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.527287e-01	ci left: 5.706232e-02	ci right 6.659491e-02	k: 617	n:10000
Cons ci ratio: 1.059997e-01	ci left: 1.138876e-01	ci right 1.267345e-01	k: 1202	n:10000
KS ci ratio: 9.764019e-02	ci left: 1.319816e-01	ci right 1.456295e-01	k: 1387	n:10000
C16orf88   10000 perm   2 sec   (5909 perm/sec)   p_kst 1.387000e-01   p_cons 1.202000e-01   p_joint 6.170000e-02

Joint ci ratio: 6.502883e-02	ci left: 1.487272e-01	ci right 1.587737e-01	k: 3074	n:20000
Cons ci ratio: 7.164200e-02	ci left: 1.255159e-01	ci right 1.348919e-01	k: 2603	n:20000
KS ci ratio: 6.658401e-02	ci left: 1.427599e-01	ci right 1.526427e-01	k: 2953	n:20000
C16orf88   20000 perm   4 sec   (5164 perm/sec)   p_kst 1.476500e-01   p_cons 1.301500e-01   p_joint 1.537000e-01

Outputting figure to mutsig2_images.part000000000021/C16orf88.3_1393_20000_0.14765_0.13015_0.1537.png
                gene_name: C16orf88
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 32 percent done.
C16orf93
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.911566e-02	ci left: 1.892437e-01	ci right 2.049332e-01	k: 1970	n:10000
Cons ci ratio: 1.145642e-01	ci left: 9.876499e-02	ci right 1.108663e-01	k: 1047	n:10000
KS ci ratio: 5.350308e-02	ci left: 3.398515e-01	ci right 3.586364e-01	k: 3492	n:10000
C16orf93   10000 perm   2 sec   (6222 perm/sec)   p_kst 3.492000e-01   p_cons 1.047000e-01   p_joint 1.970000e-01

Joint ci ratio: 5.947352e-02	ci left: 1.731161e-01	ci right 1.837775e-01	k: 3568	n:20000
Cons ci ratio: 7.715840e-02	ci left: 1.098725e-01	ci right 1.187399e-01	k: 2285	n:20000
KS ci ratio: 3.748536e-02	ci left: 3.468215e-01	ci right 3.601211e-01	k: 7069	n:20000
C16orf93   20000 perm   4 sec   (5506 perm/sec)   p_kst 3.534500e-01   p_cons 1.142500e-01   p_joint 1.784000e-01

Outputting figure to mutsig2_images.part000000000021/C16orf93.3_917_20000_0.35345_0.11425_0.1784.png
                gene_name: C16orf93
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 37 percent done.
C17orf71
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.507844e-02	ci left: 4.207667e-01	ci right 4.402738e-01	k: 4305	n:10000
Cons ci ratio: 2.606481e-02	ci left: 6.842576e-01	ci right 7.024297e-01	k: 6934	n:10000
KS ci ratio: 7.310703e-02	ci left: 2.150704e-01	ci right 2.314911e-01	k: 2232	n:10000
C17orf71   10000 perm   2 sec   (5248 perm/sec)   p_kst 2.232000e-01   p_cons 6.934000e-01   p_joint 4.305000e-01

Outputting figure to mutsig2_images.part000000000021/C17orf71.3_2992_10000_0.2232_0.6934_0.4305.png
                gene_name: C17orf71
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 42 percent done.
C18orf55
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.688685e-02	ci left: 8.362290e-01	ci right 8.505703e-01	k: 8435	n:10000
Cons ci ratio: 5.541190e-03	ci left: 9.775957e-01	ci right 9.831195e-01	k: 9805	n:10000
KS ci ratio: 4.149518e-02	ci left: 4.616756e-01	ci right 4.813410e-01	k: 4715	n:10000
C18orf55   10000 perm   2 sec   (6238 perm/sec)   p_kst 4.715000e-01   p_cons 9.805000e-01   p_joint 8.435000e-01

Outputting figure to mutsig2_images.part000000000021/C18orf55.3_771_10000_0.4715_0.9805_0.8435.png
                gene_name: C18orf55
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 47 percent done.
C19orf26
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.969865e-02	ci left: 7.904003e-01	ci right 8.062255e-01	k: 7984	n:10000
KS ci ratio: 1.368595e-02	ci left: 8.851375e-01	ci right 8.974335e-01	k: 8914	n:10000
C19orf26   10000 perm   2 sec   (6004 perm/sec)   p_kst 8.914000e-01   p_cons 7.984000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000021/C19orf26.3_1376_10000_0.8914_0.7984_1.png
                gene_name: C19orf26
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 53 percent done.
C19orf35
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.626217e-02	ci left: 3.175092e-01	ci right 3.359918e-01	k: 3267	n:10000
Cons ci ratio: 6.228728e-02	ci left: 2.747796e-01	ci right 2.925466e-01	k: 2836	n:10000
KS ci ratio: 6.090642e-02	ci left: 2.838926e-01	ci right 3.018282e-01	k: 2928	n:10000
C19orf35   10000 perm   2 sec   (5488 perm/sec)   p_kst 2.928000e-01   p_cons 2.836000e-01   p_joint 3.267000e-01

Outputting figure to mutsig2_images.part000000000021/C19orf35.3_1434_10000_0.2928_0.2836_0.3267.png
                gene_name: C19orf35
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 58 percent done.
C16orf68
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.630365e-02	ci left: 4.077101e-01	ci right 4.271381e-01	k: 4174	n:10000
Cons ci ratio: 3.904550e-02	ci left: 4.920509e-01	ci right 5.117480e-01	k: 5019	n:10000
KS ci ratio: 1.216940e-01	ci left: 8.825186e-02	ci right 9.978590e-02	k: 939	n:10000
C16orf68   10000 perm   2 sec   (6419 perm/sec)   p_kst 9.390000e-02   p_cons 5.019000e-01   p_joint 4.174000e-01

Joint ci ratio: 7.880247e-02	ci left: 1.057447e-01	ci right 1.144690e-01	k: 2201	n:20000
Cons ci ratio: 2.840970e-02	ci left: 4.806998e-01	ci right 4.946038e-01	k: 9753	n:20000
KS ci ratio: 8.612820e-02	ci left: 8.979365e-02	ci right 9.792487e-02	k: 1876	n:20000
C16orf68   20000 perm   4 sec   (5584 perm/sec)   p_kst 9.380000e-02   p_cons 4.876500e-01   p_joint 1.100500e-01

Outputting figure to mutsig2_images.part000000000021/C16orf68.2_1255_20000_0.0938_0.48765_0.11005.png
                gene_name: C16orf68
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.094 
        ci_ks_bounds_left: 0.090 
       ci_ks_bounds_right: 0.098 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 63 percent done.
C16orf78
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.064286e-02	ci left: 7.746878e-01	ci right 7.909471e-01	k: 7829	n:10000
Cons ci ratio: 3.698355e-02	ci left: 5.191594e-01	ci right 5.388237e-01	k: 5290	n:10000
KS ci ratio: 3.465118e-02	ci left: 5.515074e-01	ci right 5.710568e-01	k: 5613	n:10000
C16orf78   10000 perm   1 sec   (6750 perm/sec)   p_kst 5.613000e-01   p_cons 5.290000e-01   p_joint 7.829000e-01

Outputting figure to mutsig2_images.part000000000021/C16orf78.2_818_10000_0.5613_0.529_0.7829.png
                gene_name: C16orf78
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 68 percent done.
C16orf86
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.940616e-01	ci left: 3.538572e-02	ci right 4.308567e-02	k: 391	n:10000
Cons ci ratio: 1.504075e-01	ci left: 5.879809e-02	ci right 6.845803e-02	k: 635	n:10000
KS ci ratio: 6.073045e-02	ci left: 2.850816e-01	ci right 3.030385e-01	k: 2940	n:10000
C16orf86   10000 perm   2 sec   (6519 perm/sec)   p_kst 2.940000e-01   p_cons 6.350000e-02   p_joint 3.910000e-02

Joint ci ratio: 1.291237e-01	ci left: 4.119905e-02	ci right 4.693445e-02	k: 880	n:20000
Cons ci ratio: 1.031460e-01	ci left: 6.386583e-02	ci right 7.086059e-02	k: 1346	n:20000
KS ci ratio: 4.265528e-02	ci left: 2.905231e-01	ci right 3.032360e-01	k: 5937	n:20000
C16orf86   20000 perm   4 sec   (5704 perm/sec)   p_kst 2.968500e-01   p_cons 6.730000e-02   p_joint 4.400000e-02

Joint ci ratio: 1.132532e-01	ci left: 3.622126e-02	ci right 4.060205e-02	k: 1151	n:30000
Cons ci ratio: 8.481686e-02	ci left: 6.364067e-02	ci right 6.931030e-02	k: 1993	n:30000
KS ci ratio: 3.504325e-02	ci left: 2.891465e-01	ci right 2.994934e-01	k: 8829	n:30000
C16orf86   30000 perm   6 sec   (5375 perm/sec)   p_kst 2.943000e-01   p_cons 6.643333e-02   p_joint 3.836667e-02

Joint ci ratio: 9.026519e-02	ci left: 4.298905e-02	ci right 4.707733e-02	k: 1800	n:40000
Cons ci ratio: 7.346369e-02	ci left: 6.400365e-02	ci right 6.890952e-02	k: 2657	n:40000
KS ci ratio: 3.019806e-02	ci left: 2.919022e-01	ci right 3.008773e-01	k: 11855	n:40000
C16orf86   40000 perm   8 sec   (5172 perm/sec)   p_kst 2.963750e-01   p_cons 6.642500e-02   p_joint 4.500000e-02

Outputting figure to mutsig2_images.part000000000021/C16orf86.2_970_40000_0.29637_0.066425_0.045.png
                gene_name: C16orf86
               theta_stop: 0.090 
                    nperm: 40000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.066 
      ci_cons_bounds_left: 0.064 
     ci_cons_bounds_right: 0.069 
                  p_joint: 0.045 
     ci_joint_bounds_left: 0.043 
    ci_joint_bounds_right: 0.047 

Current progress: 74 percent done.
C17orf101
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.123146e-02	ci left: 2.817130e-01	ci right 2.996091e-01	k: 2906	n:10000
Cons ci ratio: 8.624746e-02	ci left: 1.637654e-01	ci right 1.786266e-01	k: 1711	n:10000
KS ci ratio: 9.707249e-02	ci left: 1.333527e-01	ci right 1.470577e-01	k: 1401	n:10000
C17orf101   10000 perm   2 sec   (6220 perm/sec)   p_kst 1.401000e-01   p_cons 1.711000e-01   p_joint 2.906000e-01

Outputting figure to mutsig2_images.part000000000021/C17orf101.2_1173_10000_0.1401_0.1711_0.2906.png
                gene_name: C17orf101
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 79 percent done.
C17orf104
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.052552e-01	ci left: 1.153530e-01	ci right 1.282683e-01	k: 1217	n:10000
Cons ci ratio: 9.386443e-02	ci left: 1.414855e-01	ci right 1.555199e-01	k: 1484	n:10000
KS ci ratio: 8.290783e-02	ci left: 1.750712e-01	ci right 1.903141e-01	k: 1826	n:10000
C17orf104   10000 perm   2 sec   (5473 perm/sec)   p_kst 1.826000e-01   p_cons 1.484000e-01   p_joint 1.217000e-01

Joint ci ratio: 4.355070e-02	ci left: 2.819787e-01	ci right 2.945829e-01	k: 5765	n:20000
Cons ci ratio: 6.740259e-02	ci left: 1.397527e-01	ci right 1.495508e-01	k: 2892	n:20000
KS ci ratio: 5.883244e-02	ci left: 1.762787e-01	ci right 1.870140e-01	k: 3632	n:20000
C17orf104   20000 perm   4 sec   (4828 perm/sec)   p_kst 1.816000e-01   p_cons 1.446000e-01   p_joint 2.882500e-01

Outputting figure to mutsig2_images.part000000000021/C17orf104.2_2891_20000_0.1816_0.1446_0.28825.png
                gene_name: C17orf104
               theta_stop: 0.067 
                    nperm: 20000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 84 percent done.
C17orf56
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.558222e-02	ci left: 5.383830e-01	ci right 5.579889e-01	k: 5482	n:10000
Cons ci ratio: 2.785795e-02	ci left: 6.550482e-01	ci right 6.736560e-01	k: 6644	n:10000
KS ci ratio: 5.623661e-02	ci left: 3.177077e-01	ci right 3.361932e-01	k: 3269	n:10000
C17orf56   10000 perm   2 sec   (6174 perm/sec)   p_kst 3.269000e-01   p_cons 6.644000e-01   p_joint 5.482000e-01

Outputting figure to mutsig2_images.part000000000021/C17orf56.2_1626_10000_0.3269_0.6644_0.5482.png
                gene_name: C17orf56
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 89 percent done.
C17orf85
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.632827e-02	ci left: 5.280685e-01	ci right 5.477094e-01	k: 5379	n:10000
KS ci ratio: 2.386945e-02	ci left: 7.206775e-01	ci right 7.381887e-01	k: 7295	n:10000
C17orf85   10000 perm   2 sec   (6325 perm/sec)   p_kst 7.295000e-01   p_cons 5.379000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000021/C17orf85.2_1915_10000_0.7295_0.5379_1.png
                gene_name: C17orf85
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
C18orf22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.863342e-02	ci left: 2.997517e-01	ci right 3.179597e-01	k: 3088	n:10000
Cons ci ratio: 6.694906e-02	ci left: 2.466773e-01	ci right 2.638654e-01	k: 2552	n:10000
KS ci ratio: 2.615064e-02	ci left: 6.828465e-01	ci right 7.010415e-01	k: 6920	n:10000
C18orf22   10000 perm   1 sec   (6868 perm/sec)   p_kst 6.920000e-01   p_cons 2.552000e-01   p_joint 3.088000e-01

Outputting figure to mutsig2_images.part000000000021/C18orf22.2_1060_10000_0.692_0.2552_0.3088.png
                gene_name: C18orf22
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000021
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 21 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1653>
Subject: Job 8003902: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1653>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000022> was used as the working directory.
Started at Sun Nov 11 15:04:10 2012
Results reported at Sun Nov 11 15:09:15 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000022.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000022.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 22  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000022.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    333.77 sec.
    Max Memory :      4628 MB
    Max Swap   :      7119 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
22
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 22
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 22: processing genes 1901 - 1990
Calculating significance of each gene.
Using projection method.
1901	C19orf36	1
1902	C19orf39	1
1903	C19orf40	1
1904	C19orf41	1
1905	C19orf42	1
1906	C19orf43	1
1907	C19orf44	2.104624e-01
1908	C19orf45	8.725646e-01
1909	C19orf46	2.730074e-01
1910	C19orf47	8.267958e-01
1911	C19orf48	1
1912	C19orf50	2.689075e-01
1913	C19orf51	1.458255e-01
1914	C19orf52	1
1915	C19orf53	1
1916	C19orf54	3.023156e-01
1917	C19orf55	4.915522e-01
1918	C19orf56	1
1919	C19orf57	6.949671e-01
1920	C19orf59	1
1921	C19orf6	6.136913e-01
1922	C19orf60	1
1923	C19orf61	7.939932e-01
1924	C19orf62	3.783835e-01
1925	C19orf63	1
1926	C19orf66	1
1927	C19orf70	1
1928	C19orf73	5.165711e-02
1929	C19orf75	1
1930	C1D	2.305014e-01
1931	C1GALT1	1
1932	C1GALT1C1	4.561714e-01
1933	C1QA	2.598311e-01
1934	C1QB	1
1935	C1QBP	5.414392e-01
1936	C1QC	1
1937	C1QL1	4.938636e-01
1938	C1QL2	1
1939	C1QL3	8.576836e-02
1940	C1QL4	1
1941	C1QTNF1	1
1942	C1QTNF2	7.862618e-01
1943	C1QTNF3	5.699204e-01
1944	C1QTNF4	2.925447e-01
1945	C1QTNF5	1
1946	C1QTNF6	1.045108e-01
1947	C1QTNF7	1
1948	C1QTNF8	5.896870e-01
1949	C1QTNF9	6.484364e-01
1950	C1QTNF9B	1
1951	C1R	3.168132e-01
1952	C1RL	6.276332e-01
1953	C1S	4.174910e-01
1954	C1orf100	1.455949e-01
1955	C1orf101	9.218127e-01
1956	C1orf103	1
1957	C1orf104	1
1958	C1orf105	1
1959	C1orf106	7.627046e-01
1960	C1orf107	3.421628e-01
1961	C1orf109	1
1962	C1orf110	1.457221e-01
1963	C1orf111	1
1964	C1orf112	1
1965	C1orf113	8.036599e-01
1966	C1orf114	4.633724e-01
1967	C1orf115	1
1968	C1orf116	9.227430e-01
1969	C1orf122	1
1970	C1orf123	1
1971	C1orf124	1
1972	C1orf125	2.204229e-03
1973	C1orf127	8.592356e-01
1974	C1orf128	4.540157e-02
1975	C1orf129	1.408373e-01
1976	C1orf130	1
1977	C1orf131	5.878268e-01
1978	C1orf135	1
1979	C1orf14	7.906272e-01
1980	C1orf141	7.397600e-01
1981	C1orf144	2.419551e-01
1982	C1orf146	1
1983	C1orf150	1
1984	C1orf151	1
1985	C1orf156	1
1986	C1orf158	1
1987	C1orf159	3.253322e-01
1988	C1orf161	8.176057e-01
1989	C1orf162	1
1990	C1orf163	1
Done

Running MutSig 2:
Scatter job 22: processing genes 1901 - 1990
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
C1orf125
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.988626e-01	ci left: 3.367125e-02	ci right 4.120130e-02	k: 373	n:10000
Cons ci ratio: 1.883815e-01	ci left: 3.757958e-02	ci right 4.549032e-02	k: 414	n:10000
KS ci ratio: 1.120139e-01	ci left: 1.029565e-01	ci right 1.152723e-01	k: 1090	n:10000
C1orf125   10000 perm   2 sec   (4298 perm/sec)   p_kst 1.090000e-01   p_cons 4.140000e-02   p_joint 3.730000e-02

Joint ci ratio: 1.145086e-01	ci left: 5.217214e-02	ci right 5.855790e-02	k: 1106	n:20000
Cons ci ratio: 1.270263e-01	ci left: 4.255610e-02	ci right 4.837698e-02	k: 908	n:20000
KS ci ratio: 8.085991e-02	ci left: 1.008823e-01	ci right 1.094329e-01	k: 2102	n:20000
C1orf125   20000 perm   7 sec   (2910 perm/sec)   p_kst 1.051000e-01   p_cons 4.540000e-02   p_joint 5.530000e-02

Joint ci ratio: 1.190124e-01	ci left: 3.281934e-02	ci right 3.700469e-02	k: 1046	n:30000
Cons ci ratio: 1.054507e-01	ci left: 4.170676e-02	ci right 4.638206e-02	k: 1320	n:30000
KS ci ratio: 6.599304e-02	ci left: 1.017499e-01	ci right 1.087268e-01	k: 3156	n:30000
C1orf125   30000 perm   10 sec   (3101 perm/sec)   p_kst 1.052000e-01   p_cons 4.400000e-02   p_joint 3.486667e-02

Joint ci ratio: 8.867843e-02	ci left: 4.450592e-02	ci right 4.866022e-02	k: 1862	n:40000
Cons ci ratio: 9.160477e-02	ci left: 4.176625e-02	ci right 4.580032e-02	k: 1750	n:40000
KS ci ratio: 5.731428e-02	ci left: 1.016912e-01	ci right 1.077163e-01	k: 4187	n:40000
C1orf125   40000 perm   13 sec   (3127 perm/sec)   p_kst 1.046750e-01   p_cons 4.375000e-02   p_joint 4.655000e-02

Outputting figure to mutsig2_images.part000000000022/C1orf125.11_3139_40000_0.10468_0.04375_0.04655.png
                gene_name: C1orf125
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.044 
      ci_cons_bounds_left: 0.042 
     ci_cons_bounds_right: 0.046 
                  p_joint: 0.047 
     ci_joint_bounds_left: 0.045 
    ci_joint_bounds_right: 0.049 

Current progress: 5 percent done.
C19orf44
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.336175e-02	ci left: 2.679478e-01	ci right 2.855824e-01	k: 2767	n:10000
Cons ci ratio: 2.990962e-02	ci left: 6.224605e-01	ci right 6.414626e-01	k: 6320	n:10000
KS ci ratio: 8.786218e-02	ci left: 1.586572e-01	ci right 1.733379e-01	k: 1659	n:10000
C19orf44   10000 perm   2 sec   (6064 perm/sec)   p_kst 1.659000e-01   p_cons 6.320000e-01   p_joint 2.767000e-01

Outputting figure to mutsig2_images.part000000000022/C19orf44.5_2002_10000_0.1659_0.632_0.2767.png
                gene_name: C19orf44
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 9 percent done.
C1orf129
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.433170e-01	ci left: 6.459169e-02	ci right 7.466078e-02	k: 695	n:10000
Cons ci ratio: 6.041024e-02	ci left: 2.872616e-01	ci right 3.052572e-01	k: 2962	n:10000
KS ci ratio: 2.657053e-01	ci left: 1.846678e-02	ci right 2.421679e-02	k: 212	n:10000
C1orf129   10000 perm   2 sec   (5333 perm/sec)   p_kst 2.120000e-02   p_cons 2.962000e-01   p_joint 6.950000e-02

Joint ci ratio: 1.102988e-01	ci left: 5.611465e-02	ci right 6.271417e-02	k: 1187	n:20000
Cons ci ratio: 4.139233e-02	ci left: 3.031459e-01	ci right 3.160095e-01	k: 6191	n:20000
KS ci ratio: 1.806525e-01	ci left: 2.091926e-02	ci right 2.512099e-02	k: 459	n:20000
C1orf129   20000 perm   4 sec   (4817 perm/sec)   p_kst 2.295000e-02   p_cons 3.095500e-01   p_joint 5.935000e-02

Joint ci ratio: 1.186605e-01	ci left: 3.301359e-02	ci right 3.721040e-02	k: 1052	n:30000
Cons ci ratio: 3.386801e-02	ci left: 3.034414e-01	ci right 3.139290e-01	k: 9260	n:30000
KS ci ratio: 1.447362e-01	ci left: 2.213689e-02	ci right 2.562282e-02	k: 715	n:30000
C1orf129   30000 perm   6 sec   (4629 perm/sec)   p_kst 2.383333e-02   p_cons 3.086667e-01   p_joint 3.506667e-02

Joint ci ratio: 9.570777e-02	ci left: 3.832041e-02	ci right 4.219670e-02	k: 1609	n:40000
Cons ci ratio: 2.940460e-02	ci left: 3.030790e-01	ci right 3.121490e-01	k: 12304	n:40000
KS ci ratio: 1.239995e-01	ci left: 2.286163e-02	ci right 2.590796e-02	k: 974	n:40000
C1orf129   40000 perm   9 sec   (4497 perm/sec)   p_kst 2.435000e-02   p_cons 3.076000e-01   p_joint 4.022500e-02

Joint ci ratio: 8.310727e-02	ci left: 4.082683e-02	ci right 4.438652e-02	k: 2129	n:50000
Cons ci ratio: 2.628332e-02	ci left: 3.038351e-01	ci right 3.119472e-01	k: 15394	n:50000
KS ci ratio: 1.122254e-01	ci left: 2.248166e-02	ci right 2.517402e-02	k: 1190	n:50000
C1orf129   50000 perm   11 sec   (4392 perm/sec)   p_kst 2.380000e-02   p_cons 3.078800e-01   p_joint 4.258000e-02

Joint ci ratio: 6.403611e-02	ci left: 5.689785e-02	ci right 6.067830e-02	k: 3526	n:60000
Cons ci ratio: 2.399891e-02	ci left: 3.040911e-01	ci right 3.114942e-01	k: 18467	n:60000
KS ci ratio: 1.015485e-01	ci left: 2.300138e-02	ci right 2.547826e-02	k: 1453	n:60000
C1orf129   60000 perm   14 sec   (4304 perm/sec)   p_kst 2.421667e-02   p_cons 3.077833e-01   p_joint 5.876667e-02

Joint ci ratio: 7.111496e-02	ci left: 4.011867e-02	ci right 4.309091e-02	k: 2911	n:70000
Cons ci ratio: 2.219635e-02	ci left: 3.047945e-01	ci right 3.116500e-01	k: 21575	n:70000
KS ci ratio: 9.512303e-02	ci left: 2.255788e-02	ci right 2.482470e-02	k: 1657	n:70000
C1orf129   70000 perm   17 sec   (4223 perm/sec)   p_kst 2.367143e-02   p_cons 3.082143e-01   p_joint 4.158571e-02

Outputting figure to mutsig2_images.part000000000022/C1orf129.5_2796_70000_0.023671_0.30821_0.041586.png
                gene_name: C1orf129
               theta_stop: 0.095 
                    nperm: 70000 
                     p_ks: 0.024 
        ci_ks_bounds_left: 0.023 
       ci_ks_bounds_right: 0.025 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.042 
     ci_joint_bounds_left: 0.040 
    ci_joint_bounds_right: 0.043 

Current progress: 14 percent done.
C19orf51
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.292744e-01	ci left: 7.873206e-02	ci right 8.971158e-02	k: 841	n:10000
Cons ci ratio: 5.384612e-02	ci left: 3.369706e-01	ci right 3.557190e-01	k: 3463	n:10000
KS ci ratio: 1.898176e-01	ci left: 3.700694e-02	ci right 4.486335e-02	k: 408	n:10000
C19orf51   10000 perm   2 sec   (6096 perm/sec)   p_kst 4.080000e-02   p_cons 3.463000e-01   p_joint 8.410000e-02

Joint ci ratio: 9.678552e-02	ci left: 7.211979e-02	ci right 7.950409e-02	k: 1515	n:20000
Cons ci ratio: 3.730970e-02	ci left: 3.489621e-01	ci right 3.622799e-01	k: 7112	n:20000
KS ci ratio: 1.361446e-01	ci left: 3.708443e-02	ci right 4.255039e-02	k: 795	n:20000
C19orf51   20000 perm   4 sec   (5429 perm/sec)   p_kst 3.975000e-02   p_cons 3.556000e-01   p_joint 7.575000e-02

Joint ci ratio: 9.087531e-02	ci left: 5.574003e-02	ci right 6.107923e-02	k: 1751	n:30000
Cons ci ratio: 3.051090e-02	ci left: 3.494832e-01	ci right 3.603450e-01	k: 10647	n:30000
KS ci ratio: 1.108726e-01	ci left: 3.777809e-02	ci right 4.224489e-02	k: 1199	n:30000
C19orf51   30000 perm   6 sec   (5185 perm/sec)   p_kst 3.996667e-02   p_cons 3.549000e-01   p_joint 5.836667e-02

Joint ci ratio: 5.482409e-02	ci left: 1.102095e-01	ci right 1.164468e-01	k: 4532	n:40000
Cons ci ratio: 2.652352e-02	ci left: 3.484894e-01	ci right 3.578819e-01	k: 14127	n:40000
KS ci ratio: 9.684146e-02	ci left: 3.744124e-02	ci right 4.127600e-02	k: 1573	n:40000
C19orf51   40000 perm   8 sec   (5024 perm/sec)   p_kst 3.932500e-02   p_cons 3.531750e-01   p_joint 1.133000e-01

Outputting figure to mutsig2_images.part000000000022/C19orf51.4_1815_40000_0.039325_0.35318_0.1133.png
                gene_name: C19orf51
               theta_stop: 0.097 
                    nperm: 40000 
                     p_ks: 0.039 
        ci_ks_bounds_left: 0.037 
       ci_ks_bounds_right: 0.041 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 18 percent done.
C1orf107
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.624928e-02	ci left: 8.463146e-01	ci right 8.602789e-01	k: 8534	n:10000
KS ci ratio: 1.926339e-02	ci left: 7.976037e-01	ci right 8.132180e-01	k: 8055	n:10000
C1orf107   10000 perm   2 sec   (5904 perm/sec)   p_kst 8.055000e-01   p_cons 8.534000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000022/C1orf107.4_2319_10000_0.8055_0.8534_1.png
                gene_name: C1orf107
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 23 percent done.
C1QTNF6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.693242e-02	ci left: 6.700507e-01	ci right 6.884448e-01	k: 6793	n:10000
KS ci ratio: 4.432366e-02	ci left: 4.290429e-01	ci right 4.485928e-01	k: 4388	n:10000
C1QTNF6   10000 perm   2 sec   (6633 perm/sec)   p_kst 4.388000e-01   p_cons 6.793000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000022/C1QTNF6.3_849_10000_0.4388_0.6793_1.png
                gene_name: C1QTNF6
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 27 percent done.
C1R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.919994e-02	ci left: 6.336195e-01	ci right 6.524971e-01	k: 6431	n:10000
Cons ci ratio: 6.071583e-02	ci left: 2.851807e-01	ci right 3.031394e-01	k: 2941	n:10000
KS ci ratio: 3.940630e-02	ci left: 4.874523e-01	ci right 5.071493e-01	k: 4973	n:10000
C1R   10000 perm   2 sec   (6127 perm/sec)   p_kst 4.973000e-01   p_cons 2.941000e-01   p_joint 6.431000e-01

Outputting figure to mutsig2_images.part000000000022/C1R.3_1841_10000_0.4973_0.2941_0.6431.png
                gene_name: C1R
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 32 percent done.
C1S
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.326494e-02	ci left: 5.715581e-01	ci right 5.909945e-01	k: 5813	n:10000
Cons ci ratio: 7.776672e-02	ci left: 1.946611e-01	ci right 2.105125e-01	k: 2025	n:10000
KS ci ratio: 1.860936e-02	ci left: 8.083654e-01	ci right 8.236501e-01	k: 8161	n:10000
C1S   10000 perm   2 sec   (6025 perm/sec)   p_kst 8.161000e-01   p_cons 2.025000e-01   p_joint 5.813000e-01

Outputting figure to mutsig2_images.part000000000022/C1S.3_2111_10000_0.8161_0.2025_0.5813.png
                gene_name: C1S
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 36 percent done.
C1orf103
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.204093e-02	ci left: 3.524727e-01	ci right 3.714078e-01	k: 3619	n:10000
KS ci ratio: 3.774740e-02	ci left: 5.089528e-01	ci right 5.286362e-01	k: 5188	n:10000
C1orf103   10000 perm   2 sec   (5751 perm/sec)   p_kst 5.188000e-01   p_cons 3.619000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000022/C1orf103.3_2326_10000_0.5188_0.3619_1.png
                gene_name: C1orf103
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 41 percent done.
C1orf110
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.599533e-02	ci left: 8.502907e-01	ci right 8.641005e-01	k: 8573	n:10000
Cons ci ratio: 1.730052e-02	ci left: 8.296127e-01	ci right 8.441905e-01	k: 8370	n:10000
KS ci ratio: 3.620425e-02	ci left: 5.297706e-01	ci right 5.494063e-01	k: 5396	n:10000
C1orf110   10000 perm   1 sec   (7080 perm/sec)   p_kst 5.396000e-01   p_cons 8.370000e-01   p_joint 8.573000e-01

Outputting figure to mutsig2_images.part000000000022/C1orf110.3_921_10000_0.5396_0.837_0.8573.png
                gene_name: C1orf110
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 45 percent done.
C19orf46
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.901106e-02	ci left: 8.017651e-01	ci right 8.172541e-01	k: 8096	n:10000
Cons ci ratio: 5.526715e-02	ci left: 3.253512e-01	ci right 3.439452e-01	k: 3346	n:10000
KS ci ratio: 1.514897e-02	ci left: 8.633528e-01	ci right 8.766308e-01	k: 8701	n:10000
C19orf46   10000 perm   1 sec   (6670 perm/sec)   p_kst 8.701000e-01   p_cons 3.346000e-01   p_joint 8.096000e-01

Outputting figure to mutsig2_images.part000000000022/C19orf46.2_1247_10000_0.8701_0.3346_0.8096.png
                gene_name: C19orf46
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 50 percent done.
C19orf57
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.742710e-02	ci left: 8.275777e-01	ci right 8.422267e-01	k: 8350	n:10000
Cons ci ratio: 4.833233e-02	ci left: 3.870929e-01	ci right 4.063673e-01	k: 3967	n:10000
KS ci ratio: 1.429301e-02	ci left: 8.762316e-01	ci right 8.889446e-01	k: 8827	n:10000
C19orf57   10000 perm   2 sec   (6510 perm/sec)   p_kst 8.827000e-01   p_cons 3.967000e-01   p_joint 8.350000e-01

Outputting figure to mutsig2_images.part000000000022/C19orf57.2_1942_10000_0.8827_0.3967_0.835.png
                gene_name: C19orf57
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 55 percent done.
C19orf73
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.412626e-02	ci left: 4.312370e-01	ci right 4.507974e-01	k: 4410	n:10000
Cons ci ratio: 6.390416e-02	ci left: 2.645824e-01	ci right 2.821498e-01	k: 2733	n:10000
KS ci ratio: 3.215005e-02	ci left: 5.881121e-01	ci right 6.074309e-01	k: 5978	n:10000
C19orf73   10000 perm   1 sec   (7147 perm/sec)   p_kst 5.978000e-01   p_cons 2.733000e-01   p_joint 4.410000e-01

Outputting figure to mutsig2_images.part000000000022/C19orf73.2_394_10000_0.5978_0.2733_0.441.png
                gene_name: C19orf73
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 59 percent done.
C19orf75
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.652095e-02	ci left: 8.420346e-01	ci right 8.561614e-01	k: 8492	n:10000
KS ci ratio: 4.653285e-02	ci left: 4.053188e-01	ci right 4.247308e-01	k: 4150	n:10000
C19orf75   10000 perm   1 sec   (7053 perm/sec)   p_kst 4.150000e-01   p_cons 8.492000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000022/C19orf75.2_614_10000_0.415_0.8492_1.png
                gene_name: C19orf75
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 64 percent done.
C1QA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.654802e-02	ci left: 5.250651e-01	ci right 5.447146e-01	k: 5349	n:10000
Cons ci ratio: 1.768563e-02	ci left: 8.234072e-01	ci right 8.381996e-01	k: 8309	n:10000
KS ci ratio: 1.038522e-01	ci left: 1.181869e-01	ci right 1.312326e-01	k: 1246	n:10000
C1QA   10000 perm   1 sec   (6960 perm/sec)   p_kst 1.246000e-01   p_cons 8.309000e-01   p_joint 5.349000e-01

Joint ci ratio: 4.168950e-02	ci left: 3.001139e-01	ci right 3.129424e-01	k: 6130	n:20000
Cons ci ratio: 1.267601e-02	ci left: 8.217360e-01	ci right 8.322687e-01	k: 16541	n:20000
KS ci ratio: 7.444539e-02	ci left: 1.171992e-01	ci right 1.263111e-01	k: 2434	n:20000
C1QA   20000 perm   3 sec   (6148 perm/sec)   p_kst 1.217000e-01   p_cons 8.270500e-01   p_joint 3.065000e-01

Outputting figure to mutsig2_images.part000000000022/C1QA.2_746_20000_0.1217_0.82705_0.3065.png
                gene_name: C1QA
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 68 percent done.
C1QB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.366514e-02	ci left: 1.724157e-01	ci right 1.875712e-01	k: 1799	n:10000
Cons ci ratio: 7.223301e-02	ci left: 2.192151e-01	ci right 2.357440e-01	k: 2274	n:10000
KS ci ratio: 9.364237e-02	ci left: 1.420738e-01	ci right 1.561313e-01	k: 1490	n:10000
C1QB   10000 perm   1 sec   (6903 perm/sec)   p_kst 1.490000e-01   p_cons 2.274000e-01   p_joint 1.799000e-01

Outputting figure to mutsig2_images.part000000000022/C1QB.2_770_10000_0.149_0.2274_0.1799.png
                gene_name: C1QB
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.19 

Current progress: 73 percent done.
C1QL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.212039e-02	ci left: 9.070994e-01	ci right 9.182588e-01	k: 9128	n:10000
Cons ci ratio: 8.863152e-02	ci left: 1.563004e-01	ci right 1.708961e-01	k: 1635	n:10000
KS ci ratio: 2.185929e-02	ci left: 7.543371e-01	ci right 7.711095e-01	k: 7628	n:10000
C1QL3   10000 perm   1 sec   (6911 perm/sec)   p_kst 7.628000e-01   p_cons 1.635000e-01   p_joint 9.128000e-01

Outputting figure to mutsig2_images.part000000000022/C1QL3.2_776_10000_0.7628_0.1635_0.9128.png
                gene_name: C1QL3
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 77 percent done.
C1RL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.840456e-02	ci left: 8.117176e-01	ci right 8.268959e-01	k: 8194	n:10000
Cons ci ratio: 4.017026e-02	ci left: 4.778579e-01	ci right 4.975492e-01	k: 4877	n:10000
KS ci ratio: 3.749872e-02	ci left: 5.122545e-01	ci right 5.319326e-01	k: 5221	n:10000
C1RL   10000 perm   1 sec   (6717 perm/sec)   p_kst 5.221000e-01   p_cons 4.877000e-01   p_joint 8.194000e-01

Outputting figure to mutsig2_images.part000000000022/C1RL.2_1488_10000_0.5221_0.4877_0.8194.png
                gene_name: C1RL
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 82 percent done.
C1orf100
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.294549e-02	ci left: 7.361346e-01	ci right 7.533227e-01	k: 7448	n:10000
Cons ci ratio: 5.802118e-02	ci left: 3.042144e-01	ci right 3.224944e-01	k: 3133	n:10000
KS ci ratio: 2.566713e-02	ci left: 6.908102e-01	ci right 7.088733e-01	k: 6999	n:10000
C1orf100   10000 perm   1 sec   (7116 perm/sec)   p_kst 6.999000e-01   p_cons 3.133000e-01   p_joint 7.448000e-01

Outputting figure to mutsig2_images.part000000000022/C1orf100.2_460_10000_0.6999_0.3133_0.7448.png
                gene_name: C1orf100
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.75 

Current progress: 86 percent done.
C1orf114
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.548769e-01	ci left: 5.552036e-02	ci right 6.493785e-02	k: 601	n:10000
Cons ci ratio: 2.543456e-01	ci left: 2.024526e-02	ci right 2.623692e-02	k: 231	n:10000
KS ci ratio: 1.950885e-02	ci left: 7.935450e-01	ci right 8.092791e-01	k: 8015	n:10000
C1orf114   10000 perm   2 sec   (6439 perm/sec)   p_kst 8.015000e-01   p_cons 2.310000e-02   p_joint 6.010000e-02

Joint ci ratio: 8.058186e-02	ci left: 1.015206e-01	ci right 1.100944e-01	k: 2115	n:20000
Cons ci ratio: 1.752676e-01	ci left: 2.225822e-02	ci right 2.658156e-02	k: 487	n:20000
KS ci ratio: 1.381407e-02	ci left: 7.954487e-01	ci right 8.065636e-01	k: 16021	n:20000
C1orf114   20000 perm   3 sec   (5746 perm/sec)   p_kst 8.010500e-01   p_cons 2.435000e-02   p_joint 1.057500e-01

Joint ci ratio: 4.690186e-02	ci left: 1.844182e-01	ci right 1.933088e-01	k: 5665	n:30000
Cons ci ratio: 1.450478e-01	ci left: 2.204044e-02	ci right 2.551929e-02	k: 712	n:30000
KS ci ratio: 1.125607e-02	ci left: 7.971424e-01	ci right 8.061991e-01	k: 24051	n:30000
C1orf114   30000 perm   5 sec   (5472 perm/sec)   p_kst 8.017000e-01   p_cons 2.373333e-02   p_joint 1.888333e-01

Joint ci ratio: 3.379261e-02	ci left: 2.474526e-01	ci right 2.559835e-01	k: 10068	n:40000
Cons ci ratio: 1.257964e-01	ci left: 2.220724e-02	ci right 2.521245e-02	k: 947	n:40000
KS ci ratio: 9.766396e-03	ci left: 7.971539e-01	ci right 8.050024e-01	k: 32044	n:40000
C1orf114   40000 perm   8 sec   (5293 perm/sec)   p_kst 8.011000e-01   p_cons 2.367500e-02   p_joint 2.517000e-01

Joint ci ratio: 3.311924e-02	ci left: 2.152223e-01	ci right 2.224903e-01	k: 10942	n:50000
Cons ci ratio: 1.142563e-01	ci left: 2.168437e-02	ci right 2.433141e-02	k: 1149	n:50000
KS ci ratio: 8.756139e-03	ci left: 7.968088e-01	ci right 8.038363e-01	k: 40017	n:50000
C1orf114   50000 perm   10 sec   (5147 perm/sec)   p_kst 8.003400e-01   p_cons 2.298000e-02   p_joint 2.188400e-01

Joint ci ratio: 2.956662e-02	ci left: 2.232221e-01	ci right 2.299377e-01	k: 13594	n:60000
Cons ci ratio: 1.043789e-01	ci left: 2.176660e-02	ci right 2.417984e-02	k: 1377	n:60000
KS ci ratio: 7.978790e-03	ci left: 7.976987e-01	ci right 8.041055e-01	k: 48055	n:60000
C1orf114   60000 perm   12 sec   (5002 perm/sec)   p_kst 8.009167e-01   p_cons 2.295000e-02   p_joint 2.265667e-01

Joint ci ratio: 3.055607e-02	ci left: 1.874404e-01	ci right 1.932710e-01	k: 13324	n:70000
Cons ci ratio: 9.684190e-02	ci left: 2.176271e-02	ci right 2.399137e-02	k: 1600	n:70000
KS ci ratio: 7.369431e-03	ci left: 7.986979e-01	ci right 8.046199e-01	k: 56117	n:70000
C1orf114   70000 perm   14 sec   (4851 perm/sec)   p_kst 8.016714e-01   p_cons 2.285714e-02   p_joint 1.903429e-01

Outputting figure to mutsig2_images.part000000000022/C1orf114.2_1547_70000_0.80167_0.022857_0.19034.png
                gene_name: C1orf114
               theta_stop: 0.097 
                    nperm: 70000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.023 
      ci_cons_bounds_left: 0.022 
     ci_cons_bounds_right: 0.024 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.19 

Current progress: 91 percent done.
C1orf128
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.422405e-02	ci left: 5.576212e-01	ci right 5.771396e-01	k: 5674	n:10000
KS ci ratio: 3.480620e-02	ci left: 5.493028e-01	ci right 5.688627e-01	k: 5591	n:10000
C1orf128   10000 perm   1 sec   (6969 perm/sec)   p_kst 5.591000e-01   p_cons 5.674000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000022/C1orf128.2_660_10000_0.5591_0.5674_1.png
                gene_name: C1orf128
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
C1orf150
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.697915e-01	ci left: 4.628962e-02	ci right 5.497454e-02	k: 505	n:10000
Cons ci ratio: 1.677072e-01	ci left: 4.744132e-02	ci right 5.622208e-02	k: 517	n:10000
KS ci ratio: 1.005619e-01	ci left: 1.252279e-01	ci right 1.385873e-01	k: 1318	n:10000
C1orf150   10000 perm   1 sec   (7117 perm/sec)   p_kst 1.318000e-01   p_cons 5.170000e-02   p_joint 5.050000e-02

Joint ci ratio: 1.014209e-01	ci left: 6.596456e-02	ci right 7.306121e-02	k: 1389	n:20000
Cons ci ratio: 1.176937e-01	ci left: 4.944921e-02	ci right 5.568168e-02	k: 1050	n:20000
KS ci ratio: 7.107820e-02	ci left: 1.272883e-01	ci right 1.367189e-01	k: 2639	n:20000
C1orf150   20000 perm   3 sec   (6151 perm/sec)   p_kst 1.319500e-01   p_cons 5.250000e-02   p_joint 6.945000e-02

Joint ci ratio: 7.643710e-02	ci left: 7.751090e-02	ci right 8.370394e-02	k: 2417	n:30000
Cons ci ratio: 9.411313e-02	ci left: 5.208821e-02	ci right 5.726512e-02	k: 1639	n:30000
KS ci ratio: 5.838414e-02	ci left: 1.268062e-01	ci right 1.344655e-01	k: 3918	n:30000
C1orf150   30000 perm   5 sec   (5882 perm/sec)   p_kst 1.306000e-01   p_cons 5.463333e-02   p_joint 8.056667e-02

Outputting figure to mutsig2_images.part000000000022/C1orf150.2_428_30000_0.1306_0.054633_0.080567.png
                gene_name: C1orf150
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.055 
      ci_cons_bounds_left: 0.052 
     ci_cons_bounds_right: 0.057 
                  p_joint: 0.081 
     ci_joint_bounds_left: 0.078 
    ci_joint_bounds_right: 0.084 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000022
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 22 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1712>
Subject: Job 8003905: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1712>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000023> was used as the working directory.
Started at Sun Nov 11 15:04:10 2012
Results reported at Sun Nov 11 15:10:50 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000023.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000023.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 23  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000023.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    431.88 sec.
    Max Memory :      4804 MB
    Max Swap   :      7098 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
23
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 23
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 23: processing genes 1991 - 2081
Calculating significance of each gene.
Using projection method.
1991	C1orf168	7.300208e-01
1992	C1orf172	8.094848e-01
1993	C1orf173	9.054281e-01
1994	C1orf174	1
1995	C1orf175	9.866945e-01
1996	C1orf177	5.817024e-01
1997	C1orf182	1
1998	C1orf183	1
1999	C1orf186	3.839446e-01
2000/18094 2000	C1orf187	1.787552e-01
2001	C1orf189	1
2002	C1orf190	1
2003	C1orf192	8.214806e-02
2004	C1orf194	1
2005	C1orf198	3.289467e-01
2006	C1orf201	6.591415e-01
2007	C1orf21	1
2008	C1orf210	2.286673e-01
2009	C1orf213	1
2010	C1orf216	3.754063e-01
2011	C1orf226	1
2012	C1orf227	1
2013	C1orf25	4.802973e-01
2014	C1orf26	2.903672e-01
2015	C1orf27	1
2016	C1orf31	3.776995e-01
2017	C1orf35	1
2018	C1orf38	1
2019	C1orf43	5.773731e-01
2020	C1orf49	4.859625e-01
2021	C1orf50	1
2022	C1orf51	5.841516e-01
2023	C1orf52	1
2024	C1orf53	6.999315e-02
2025	C1orf54	3.320672e-01
2026	C1orf55	1.528333e-01
2027	C1orf56	7.480985e-01
2028	C1orf57	1
2029	C1orf58	5.930625e-01
2030	C1orf59	5.307652e-01
2031	C1orf61	1
2032	C1orf63	7.592912e-01
2033	C1orf64	3.302707e-01
2034	C1orf65	5.796442e-01
2035	C1orf66	9.047924e-01
2036	C1orf69	4.568822e-01
2037	C1orf74	4.012070e-01
2038	C1orf77	4.722348e-02
2039	C1orf83	2.443167e-01
2040	C1orf84	1
2041	C1orf85	1
2042	C1orf86	1
2043	C1orf87	4.660372e-01
2044	C1orf88	1.586856e-01
2045	C1orf89	5.933848e-01
2046	C1orf9	4.050682e-01
2047	C1orf91	4.106584e-01
2048	C1orf92	4.287750e-01
2049	C1orf93	2.832430e-01
2050	C1orf94	3.343242e-01
2051	C1orf95	1
2052	C1orf96	5.536535e-01
2053	C2	7.621238e-01
2054	C20orf103	5.370331e-01
2055	C20orf106	2.478702e-01
2056	C20orf107	1
2057	C20orf108	1
2058	C20orf11	3.667664e-01
2059	C20orf111	1.716076e-01
2060	C20orf112	7.243723e-01
2061	C20orf114	3.706207e-01
2062	C20orf117	9.512584e-01
2063	C20orf118	3.928318e-01
2064	C20orf12	1.233035e-01
2065	C20orf132	1
2066	C20orf134	1
2067	C20orf135	4.861250e-01
2068	C20orf141	1.142734e-01
2069	C20orf151	6.657385e-01
2070	C20orf152	8.524004e-01
2071	C20orf160	1.071113e-01
2072	C20orf165	1
2073	C20orf166	3.919907e-01
2074	C20orf177	5.573889e-01
2075	C20orf185	4.809239e-01
2076	C20orf186	2.901344e-02
2077	C20orf194	8.753007e-01
2078	C20orf195	1
2079	C20orf196	3.717238e-01
2080	C20orf197	1
2081	C20orf20	5.413398e-01
Done

Running MutSig 2:
Scatter job 23: processing genes 1991 - 2081
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
C1orf173
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.315671e-02	ci left: 7.325974e-01	ci right 7.498618e-01	k: 7413	n:10000
Cons ci ratio: 2.003453e-02	ci left: 7.848229e-01	ci right 8.008061e-01	k: 7929	n:10000
KS ci ratio: 4.673464e-02	ci left: 4.032266e-01	ci right 4.226242e-01	k: 4129	n:10000
C1orf173   10000 perm   3 sec   (3183 perm/sec)   p_kst 4.129000e-01   p_cons 7.929000e-01   p_joint 7.413000e-01

Outputting figure to mutsig2_images.part000000000023/C1orf173.37_4649_10000_0.4129_0.7929_0.7413.png
                gene_name: C1orf173
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 3 percent done.
C20orf186
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.341025e-02	ci left: 7.283538e-01	ci right 7.457079e-01	k: 7371	n:10000
Cons ci ratio: 2.692624e-02	ci left: 6.701514e-01	ci right 6.885440e-01	k: 6794	n:10000
KS ci ratio: 3.192992e-02	ci left: 5.914243e-01	ci right 6.107168e-01	k: 6011	n:10000
C20orf186   10000 perm   2 sec   (4029 perm/sec)   p_kst 6.011000e-01   p_cons 6.794000e-01   p_joint 7.371000e-01

Outputting figure to mutsig2_images.part000000000023/C20orf186.9_1909_10000_0.6011_0.6794_0.7371.png
                gene_name: C20orf186
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 7 percent done.
C20orf117
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.172700e-01	ci left: 9.457666e-02	ci right 1.064572e-01	k: 1004	n:10000
Cons ci ratio: 1.950272e-02	ci left: 7.936464e-01	ci right 8.093775e-01	k: 8016	n:10000
KS ci ratio: 2.073636e-01	ci left: 3.091404e-02	ci right 3.816041e-02	k: 344	n:10000
C20orf117   10000 perm   2 sec   (4044 perm/sec)   p_kst 3.440000e-02   p_cons 8.016000e-01   p_joint 1.004000e-01

Joint ci ratio: 9.039081e-02	ci left: 8.205187e-02	ci right 8.986900e-02	k: 1718	n:20000
Cons ci ratio: 1.367310e-02	ci left: 7.987325e-01	ci right 8.097789e-01	k: 16086	n:20000
KS ci ratio: 1.466316e-01	ci left: 3.196523e-02	ci right 3.707126e-02	k: 689	n:20000
C20orf117   20000 perm   5 sec   (3785 perm/sec)   p_kst 3.445000e-02   p_cons 8.043000e-01   p_joint 8.590000e-02

Joint ci ratio: 7.880085e-02	ci left: 7.318945e-02	ci right 7.922626e-02	k: 2285	n:30000
Cons ci ratio: 1.125135e-02	ci left: 7.972768e-01	ci right 8.063313e-01	k: 24055	n:30000
KS ci ratio: 1.193079e-01	ci left: 3.265748e-02	ci right 3.683325e-02	k: 1041	n:30000
C20orf117   30000 perm   8 sec   (3630 perm/sec)   p_kst 3.470000e-02   p_cons 8.018333e-01   p_joint 7.616667e-02

Joint ci ratio: 7.001240e-02	ci left: 7.012494e-02	ci right 7.523731e-02	k: 2906	n:40000
Cons ci ratio: 9.789373e-03	ci left: 7.963984e-01	ci right 8.042579e-01	k: 32014	n:40000
KS ci ratio: 1.023112e-01	ci left: 3.358602e-02	ci right 3.723183e-02	k: 1415	n:40000
C20orf117   40000 perm   11 sec   (3537 perm/sec)   p_kst 3.537500e-02   p_cons 8.003500e-01   p_joint 7.265000e-02

Joint ci ratio: 6.044025e-02	ci left: 7.524979e-02	ci right 7.995939e-02	k: 3879	n:50000
Cons ci ratio: 8.790644e-03	ci left: 7.955406e-01	ci right 8.025847e-01	k: 39954	n:50000
KS ci ratio: 9.084706e-02	ci left: 3.426674e-02	ci right 3.754743e-02	k: 1794	n:50000
C20orf117   50000 perm   14 sec   (3487 perm/sec)   p_kst 3.588000e-02   p_cons 7.990800e-01   p_joint 7.758000e-02

Outputting figure to mutsig2_images.part000000000023/C20orf117.8_5108_50000_0.03588_0.79908_0.07758.png
                gene_name: C20orf117
               theta_stop: 0.091 
                    nperm: 50000 
                     p_ks: 0.036 
        ci_ks_bounds_left: 0.034 
       ci_ks_bounds_right: 0.038 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.078 
     ci_joint_bounds_left: 0.075 
    ci_joint_bounds_right: 0.080 

Current progress: 10 percent done.
C1orf9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.785907e-02	ci left: 2.416357e-01	ci right 2.587100e-01	k: 2501	n:10000
Cons ci ratio: 3.985807e-02	ci left: 4.817552e-01	ci right 5.014497e-01	k: 4916	n:10000
KS ci ratio: 1.330186e-01	ci left: 7.456177e-02	ci right 8.528446e-02	k: 798	n:10000
C1orf9   10000 perm   3 sec   (3792 perm/sec)   p_kst 7.980000e-02   p_cons 4.916000e-01   p_joint 2.501000e-01

Joint ci ratio: 5.989268e-02	ci left: 1.710904e-01	ci right 1.817039e-01	k: 3527	n:20000
Cons ci ratio: 2.843245e-02	ci left: 4.803000e-01	ci right 4.942037e-01	k: 9745	n:20000
KS ci ratio: 9.470588e-02	ci left: 7.515134e-02	ci right 8.267162e-02	k: 1577	n:20000
C1orf9   20000 perm   6 sec   (3571 perm/sec)   p_kst 7.885000e-02   p_cons 4.872500e-01   p_joint 1.763500e-01

Outputting figure to mutsig2_images.part000000000023/C1orf9.7_3861_20000_0.07885_0.48725_0.17635.png
                gene_name: C1orf9
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.079 
        ci_ks_bounds_left: 0.075 
       ci_ks_bounds_right: 0.083 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 14 percent done.
C1orf26
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.947820e-02	ci left: 7.940522e-01	ci right 8.097715e-01	k: 8020	n:10000
Cons ci ratio: 5.965125e-02	ci left: 2.925144e-01	ci right 3.106013e-01	k: 3015	n:10000
KS ci ratio: 1.627524e-02	ci left: 8.459069e-01	ci right 8.598868e-01	k: 8530	n:10000
C1orf26   10000 perm   2 sec   (4870 perm/sec)   p_kst 8.530000e-01   p_cons 3.015000e-01   p_joint 8.020000e-01

Outputting figure to mutsig2_images.part000000000023/C1orf26.5_2775_10000_0.853_0.3015_0.802.png
                gene_name: C1orf26
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 17 percent done.
C1orf65
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.246282e-02	ci left: 7.442221e-01	ci right 7.612304e-01	k: 7528	n:10000
Cons ci ratio: 3.768697e-02	ci left: 5.097532e-01	ci right 5.294354e-01	k: 5196	n:10000
KS ci ratio: 2.849757e-02	ci left: 6.447840e-01	ci right 6.635261e-01	k: 6542	n:10000
C1orf65   10000 perm   2 sec   (5865 perm/sec)   p_kst 6.542000e-01   p_cons 5.196000e-01   p_joint 7.528000e-01

Outputting figure to mutsig2_images.part000000000023/C1orf65.5_1876_10000_0.6542_0.5196_0.7528.png
                gene_name: C1orf65
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 21 percent done.
C20orf12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.299980e-02	ci left: 7.352249e-01	ci right 7.524328e-01	k: 7439	n:10000
Cons ci ratio: 1.412697e-02	ci left: 8.786872e-01	ci right 8.912875e-01	k: 8851	n:10000
KS ci ratio: 3.276867e-02	ci left: 5.788806e-01	ci right 5.982678e-01	k: 5886	n:10000
C20orf12   10000 perm   2 sec   (5351 perm/sec)   p_kst 5.886000e-01   p_cons 8.851000e-01   p_joint 7.439000e-01

Outputting figure to mutsig2_images.part000000000023/C20orf12.5_2339_10000_0.5886_0.8851_0.7439.png
                gene_name: C20orf12
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.75 

Current progress: 24 percent done.
C1orf55
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.435967e-02	ci left: 4.286440e-01	ci right 4.481919e-01	k: 4384	n:10000
Cons ci ratio: 2.105514e-02	ci left: 7.678000e-01	ci right 7.842389e-01	k: 7761	n:10000
KS ci ratio: 5.938332e-02	ci left: 2.943978e-01	ci right 3.125168e-01	k: 3034	n:10000
C1orf55   10000 perm   2 sec   (5513 perm/sec)   p_kst 3.034000e-01   p_cons 7.761000e-01   p_joint 4.384000e-01

Outputting figure to mutsig2_images.part000000000023/C1orf55.4_1384_10000_0.3034_0.7761_0.4384.png
                gene_name: C1orf55
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 28 percent done.
C20orf114
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.186767e-02	ci left: 9.104942e-01	ci right 9.214620e-01	k: 9161	n:10000
Cons ci ratio: 2.090368e-02	ci left: 7.703319e-01	ci right 7.867055e-01	k: 7786	n:10000
KS ci ratio: 2.407510e-02	ci left: 7.172444e-01	ci right 7.348238e-01	k: 7261	n:10000
C20orf114   10000 perm   2 sec   (5934 perm/sec)   p_kst 7.261000e-01   p_cons 7.786000e-01   p_joint 9.161000e-01

Outputting figure to mutsig2_images.part000000000023/C20orf114.4_1515_10000_0.7261_0.7786_0.9161.png
                gene_name: C20orf114
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 31 percent done.
C1orf187
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.936750e-02	ci left: 3.770397e-01	ci right 3.962264e-01	k: 3866	n:10000
Cons ci ratio: 1.301967e-02	ci left: 8.946712e-01	ci right 9.064942e-01	k: 9007	n:10000
KS ci ratio: 1.025873e-01	ci left: 1.208265e-01	ci right 1.339914e-01	k: 1273	n:10000
C1orf187   10000 perm   2 sec   (6160 perm/sec)   p_kst 1.273000e-01   p_cons 9.007000e-01   p_joint 3.866000e-01

Joint ci ratio: 3.733820e-02	ci left: 3.486137e-01	ci right 3.619284e-01	k: 7105	n:20000
Cons ci ratio: 9.304900e-03	ci left: 8.944862e-01	ci right 9.028975e-01	k: 17975	n:20000
KS ci ratio: 7.140574e-02	ci left: 1.262544e-01	ci right 1.356532e-01	k: 2618	n:20000
C1orf187   20000 perm   4 sec   (5516 perm/sec)   p_kst 1.309000e-01   p_cons 8.987500e-01   p_joint 3.552500e-01

Outputting figure to mutsig2_images.part000000000023/C1orf187.3_1074_20000_0.1309_0.89875_0.35525.png
                gene_name: C1orf187
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 34 percent done.
C1orf25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.347270e-02	ci left: 2.672549e-01	ci right 2.848757e-01	k: 2760	n:10000
Cons ci ratio: 1.158024e-01	ci left: 9.681653e-02	ci right 1.088160e-01	k: 1027	n:10000
KS ci ratio: 7.223301e-02	ci left: 2.192151e-01	ci right 2.357440e-01	k: 2274	n:10000
C1orf25   10000 perm   2 sec   (5775 perm/sec)   p_kst 2.274000e-01   p_cons 1.027000e-01   p_joint 2.760000e-01

Joint ci ratio: 5.485427e-02	ci left: 1.977903e-01	ci right 2.089961e-01	k: 4067	n:20000
Cons ci ratio: 8.133614e-02	ci left: 9.980216e-02	ci right 1.083133e-01	k: 2080	n:20000
KS ci ratio: 5.104067e-02	ci left: 2.219031e-01	ci right 2.335761e-01	k: 4554	n:20000
C1orf25   20000 perm   4 sec   (5175 perm/sec)   p_kst 2.277000e-01   p_cons 1.040000e-01   p_joint 2.033500e-01

Outputting figure to mutsig2_images.part000000000023/C1orf25.3_2262_20000_0.2277_0.104_0.20335.png
                gene_name: C1orf25
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.100 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 38 percent done.
C1orf74
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.747592e-01	ci left: 4.370078e-02	ci right 5.216506e-02	k: 478	n:10000
Cons ci ratio: 2.870972e-01	ci left: 1.567108e-02	ci right 2.101476e-02	k: 182	n:10000
KS ci ratio: 4.864673e-02	ci left: 3.840068e-01	ci right 4.032552e-01	k: 3936	n:10000
C1orf74   10000 perm   2 sec   (6434 perm/sec)   p_kst 3.936000e-01   p_cons 1.820000e-02   p_joint 4.780000e-02

Joint ci ratio: 1.155622e-01	ci left: 5.124802e-02	ci right 5.758231e-02	k: 1087	n:20000
Cons ci ratio: 1.983707e-01	ci left: 1.724818e-02	ci right 2.109342e-02	k: 382	n:20000
KS ci ratio: 3.462620e-02	ci left: 3.837300e-01	ci right 3.973018e-01	k: 7810	n:20000
C1orf74   20000 perm   4 sec   (5656 perm/sec)   p_kst 3.905000e-01   p_cons 1.910000e-02   p_joint 5.435000e-02

Joint ci ratio: 1.427074e-01	ci left: 2.278012e-02	ci right 2.631278e-02	k: 735	n:30000
Cons ci ratio: 1.617551e-01	ci left: 1.764517e-02	ci right 2.078225e-02	k: 575	n:30000
KS ci ratio: 2.830480e-02	ci left: 3.844417e-01	ci right 3.955130e-01	k: 11699	n:30000
C1orf74   30000 perm   6 sec   (5409 perm/sec)   p_kst 3.899667e-01   p_cons 1.916667e-02   p_joint 2.450000e-02

Joint ci ratio: 1.268280e-01	ci left: 2.184384e-02	ci right 2.482592e-02	k: 932	n:40000
Cons ci ratio: 1.476112e-01	ci left: 1.604487e-02	ci right 1.862589e-02	k: 692	n:40000
KS ci ratio: 2.445094e-02	ci left: 3.863881e-01	ci right 3.959777e-01	k: 15647	n:40000
C1orf74   40000 perm   8 sec   (5241 perm/sec)   p_kst 3.911750e-01   p_cons 1.730000e-02   p_joint 2.330000e-02

Joint ci ratio: 1.031746e-01	ci left: 2.661043e-02	ci right 2.952471e-02	k: 1402	n:50000
Cons ci ratio: 1.300740e-01	ci left: 1.667845e-02	ci right 1.901801e-02	k: 891	n:50000
KS ci ratio: 2.186773e-02	ci left: 3.869388e-01	ci right 3.955139e-01	k: 19561	n:50000
C1orf74   50000 perm   10 sec   (5094 perm/sec)   p_kst 3.912200e-01   p_cons 1.782000e-02   p_joint 2.804000e-02

Joint ci ratio: 8.253514e-02	ci left: 3.473589e-02	ci right 3.774252e-02	k: 2173	n:60000
Cons ci ratio: 1.184260e-01	ci left: 1.687031e-02	ci right 1.901002e-02	k: 1075	n:60000
KS ci ratio: 2.001938e-02	ci left: 3.859612e-01	ci right 3.937828e-01	k: 23392	n:60000
C1orf74   60000 perm   12 sec   (4978 perm/sec)   p_kst 3.898667e-01   p_cons 1.791667e-02   p_joint 3.621667e-02

Joint ci ratio: 8.834367e-02	ci left: 2.614724e-02	ci right 2.857786e-02	k: 1914	n:70000
Cons ci ratio: 1.094343e-01	ci left: 1.701408e-02	ci right 1.899759e-02	k: 1259	n:70000
KS ci ratio: 1.855485e-02	ci left: 3.857282e-01	ci right 3.929667e-01	k: 27254	n:70000
C1orf74   70000 perm   14 sec   (4873 perm/sec)   p_kst 3.893429e-01   p_cons 1.798571e-02   p_joint 2.734286e-02

Joint ci ratio: 7.064318e-02	ci left: 3.575168e-02	ci right 3.838203e-02	k: 2964	n:80000
Cons ci ratio: 1.011921e-01	ci left: 1.747997e-02	ci right 1.935519e-02	k: 1472	n:80000
KS ci ratio: 1.735901e-02	ci left: 3.858941e-01	ci right 3.926640e-01	k: 31142	n:80000
C1orf74   80000 perm   17 sec   (4777 perm/sec)   p_kst 3.892750e-01   p_cons 1.840000e-02   p_joint 3.705000e-02

Joint ci ratio: 7.299995e-02	ci left: 2.991000e-02	ci right 3.218702e-02	k: 2793	n:90000
Cons ci ratio: 9.546726e-02	ci left: 1.751027e-02	ci right 1.927652e-02	k: 1654	n:90000
KS ci ratio: 1.637536e-02	ci left: 3.858241e-01	ci right 3.922053e-01	k: 35011	n:90000
C1orf74   90000 perm   19 sec   (4681 perm/sec)   p_kst 3.890111e-01   p_cons 1.837778e-02   p_joint 3.103333e-02

Outputting figure to mutsig2_images.part000000000023/C1orf74.3_814_90000_0.38901_0.018378_0.031033.png
                gene_name: C1orf74
               theta_stop: 0.095 
                    nperm: 90000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.018 
      ci_cons_bounds_left: 0.018 
     ci_cons_bounds_right: 0.019 
                  p_joint: 0.031 
     ci_joint_bounds_left: 0.030 
    ci_joint_bounds_right: 0.032 

Current progress: 41 percent done.
C1orf77
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.703560e-03	ci left: 9.833923e-01	ci right 9.881185e-01	k: 9859	n:10000
Cons ci ratio: 4.819809e-03	ci left: 9.826368e-01	ci right 9.874746e-01	k: 9852	n:10000
KS ci ratio: 9.215698e-03	ci left: 9.431544e-01	ci right 9.519826e-01	k: 9477	n:10000
C1orf77   10000 perm   2 sec   (6273 perm/sec)   p_kst 9.477000e-01   p_cons 9.852000e-01   p_joint 9.859000e-01

Outputting figure to mutsig2_images.part000000000023/C1orf77.3_767_10000_0.9477_0.9852_0.9859.png
                gene_name: C1orf77
               theta_stop: 0.0092 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 45 percent done.
C1orf87
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.962739e-02	ci left: 6.268832e-01	ci right 6.458373e-01	k: 6364	n:10000
Cons ci ratio: 5.093290e-02	ci left: 3.624157e-01	ci right 3.814590e-01	k: 3719	n:10000
KS ci ratio: 2.391178e-02	ci left: 7.199706e-01	ci right 7.374960e-01	k: 7288	n:10000
C1orf87   10000 perm   2 sec   (5922 perm/sec)   p_kst 7.288000e-01   p_cons 3.719000e-01   p_joint 6.364000e-01

Outputting figure to mutsig2_images.part000000000023/C1orf87.3_1685_10000_0.7288_0.3719_0.6364.png
                gene_name: C1orf87
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 48 percent done.
C1orf92
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.335612e-02	ci left: 4.399157e-01	ci right 4.595136e-01	k: 4497	n:10000
Cons ci ratio: 4.166204e-02	ci left: 4.596785e-01	ci right 4.793393e-01	k: 4695	n:10000
KS ci ratio: 6.802223e-02	ci left: 2.407462e-01	ci right 2.578001e-01	k: 2492	n:10000
C1orf92   10000 perm   2 sec   (6013 perm/sec)   p_kst 2.492000e-01   p_cons 4.695000e-01   p_joint 4.497000e-01

Outputting figure to mutsig2_images.part000000000023/C1orf92.3_1740_10000_0.2492_0.4695_0.4497.png
                gene_name: C1orf92
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 52 percent done.
C1orf94
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.334700e-02	ci left: 5.703546e-01	ci right 5.897987e-01	k: 5801	n:10000
Cons ci ratio: 1.626875e-02	ci left: 8.460089e-01	ci right 8.599848e-01	k: 8531	n:10000
KS ci ratio: 6.621760e-02	ci left: 2.508304e-01	ci right 2.681099e-01	k: 2594	n:10000
C1orf94   10000 perm   2 sec   (5923 perm/sec)   p_kst 2.594000e-01   p_cons 8.531000e-01   p_joint 5.801000e-01

Outputting figure to mutsig2_images.part000000000023/C1orf94.3_1825_10000_0.2594_0.8531_0.5801.png
                gene_name: C1orf94
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 55 percent done.
C20orf160
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.156183e-02	ci left: 4.608768e-01	ci right 4.805403e-01	k: 4707	n:10000
Cons ci ratio: 7.035355e-02	ci left: 2.284954e-01	ci right 2.452581e-01	k: 2368	n:10000
KS ci ratio: 1.443746e-02	ci left: 8.740836e-01	ci right 8.868938e-01	k: 8806	n:10000
C20orf160   10000 perm   2 sec   (6162 perm/sec)   p_kst 8.806000e-01   p_cons 2.368000e-01   p_joint 4.707000e-01

Outputting figure to mutsig2_images.part000000000023/C20orf160.3_1334_10000_0.8806_0.2368_0.4707.png
                gene_name: C20orf160
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 59 percent done.
C20orf194
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.531729e-02	ci left: 5.420892e-01	ci right 5.616806e-01	k: 5519	n:10000
Cons ci ratio: 2.571600e-02	ci left: 6.900036e-01	ci right 7.080803e-01	k: 6991	n:10000
KS ci ratio: 5.668679e-02	ci left: 3.142343e-01	ci right 3.326686e-01	k: 3234	n:10000
C20orf194   10000 perm   2 sec   (5041 perm/sec)   p_kst 3.234000e-01   p_cons 6.991000e-01   p_joint 5.519000e-01

Outputting figure to mutsig2_images.part000000000023/C20orf194.3_3682_10000_0.3234_0.6991_0.5519.png
                gene_name: C20orf194
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 62 percent done.
C1orf168
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.087503e-02	ci left: 6.074897e-01	ci right 6.266420e-01	k: 6171	n:10000
Cons ci ratio: 4.449503e-02	ci left: 4.271481e-01	ci right 4.466887e-01	k: 4369	n:10000
KS ci ratio: 3.747619e-02	ci left: 5.125547e-01	ci right 5.322323e-01	k: 5224	n:10000
C1orf168   10000 perm   2 sec   (5811 perm/sec)   p_kst 5.224000e-01   p_cons 4.369000e-01   p_joint 6.171000e-01

Outputting figure to mutsig2_images.part000000000023/C1orf168.2_2267_10000_0.5224_0.4369_0.6171.png
                gene_name: C1orf168
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 66 percent done.
C1orf175
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.607094e-02	ci left: 3.189980e-01	ci right 3.375022e-01	k: 3282	n:10000
Cons ci ratio: 1.313289e-01	ci left: 7.640391e-02	ci right 8.724117e-02	k: 817	n:10000
KS ci ratio: 3.255266e-02	ci left: 5.820912e-01	ci right 6.014553e-01	k: 5918	n:10000
C1orf175   10000 perm   2 sec   (5271 perm/sec)   p_kst 5.918000e-01   p_cons 8.170000e-02   p_joint 3.282000e-01

Joint ci ratio: 4.825408e-02	ci left: 2.420765e-01	ci right 2.540968e-01	k: 4961	n:20000
Cons ci ratio: 9.390070e-02	ci left: 7.637423e-02	ci right 8.394836e-02	k: 1602	n:20000
KS ci ratio: 2.296237e-02	ci left: 5.861533e-01	ci right 5.998197e-01	k: 11860	n:20000
C1orf175   20000 perm   4 sec   (4818 perm/sec)   p_kst 5.930000e-01   p_cons 8.010000e-02   p_joint 2.480500e-01

Outputting figure to mutsig2_images.part000000000023/C1orf175.2_4060_20000_0.593_0.0801_0.24805.png
                gene_name: C1orf175
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.080 
      ci_cons_bounds_left: 0.076 
     ci_cons_bounds_right: 0.084 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 69 percent done.
C1orf192
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.493302e-02	ci left: 2.583481e-01	ci right 2.757878e-01	k: 2670	n:10000
Cons ci ratio: 4.464907e-02	ci left: 4.254529e-01	ci right 4.449849e-01	k: 4352	n:10000
KS ci ratio: 2.076755e-01	ci left: 3.081908e-02	ci right 3.805543e-02	k: 343	n:10000
C1orf192   10000 perm   1 sec   (6752 perm/sec)   p_kst 3.430000e-02   p_cons 4.352000e-01   p_joint 2.670000e-01

Joint ci ratio: 8.491052e-02	ci left: 9.219640e-02	ci right 1.004214e-01	k: 1925	n:20000
Cons ci ratio: 3.374425e-02	ci left: 3.960421e-01	ci right 4.096862e-01	k: 8057	n:20000
KS ci ratio: 1.466316e-01	ci left: 3.196523e-02	ci right 3.707126e-02	k: 689	n:20000
C1orf192   20000 perm   3 sec   (6008 perm/sec)   p_kst 3.445000e-02   p_cons 4.028500e-01   p_joint 9.625000e-02

Joint ci ratio: 6.853184e-02	ci left: 9.495339e-02	ci right 1.017246e-01	k: 2949	n:30000
Cons ci ratio: 2.764381e-02	ci left: 3.957133e-01	ci right 4.068392e-01	k: 12038	n:30000
KS ci ratio: 1.205112e-01	ci left: 3.201016e-02	ci right 3.614738e-02	k: 1021	n:30000
C1orf192   30000 perm   5 sec   (5710 perm/sec)   p_kst 3.403333e-02   p_cons 4.012667e-01   p_joint 9.830000e-02

Joint ci ratio: 5.862858e-02	ci left: 9.757011e-02	ci right 1.034880e-01	k: 4020	n:40000
Cons ci ratio: 2.391034e-02	ci left: 3.970651e-01	ci right 4.066991e-01	k: 16075	n:40000
KS ci ratio: 1.023112e-01	ci left: 3.358602e-02	ci right 3.723183e-02	k: 1415	n:40000
C1orf192   40000 perm   7 sec   (5510 perm/sec)   p_kst 3.537500e-02   p_cons 4.018750e-01   p_joint 1.005000e-01

Joint ci ratio: 4.147143e-02	ci left: 1.484470e-01	ci right 1.547535e-01	k: 7579	n:50000
Cons ci ratio: 2.142613e-02	ci left: 3.966800e-01	ci right 4.052915e-01	k: 20049	n:50000
KS ci ratio: 9.180625e-02	ci left: 3.356262e-02	ci right 3.681164e-02	k: 1758	n:50000
C1orf192   50000 perm   9 sec   (5324 perm/sec)   p_kst 3.516000e-02   p_cons 4.009800e-01   p_joint 1.515800e-01

Outputting figure to mutsig2_images.part000000000023/C1orf192.2_554_50000_0.03516_0.40098_0.15158.png
                gene_name: C1orf192
               theta_stop: 0.092 
                    nperm: 50000 
                     p_ks: 0.035 
        ci_ks_bounds_left: 0.034 
       ci_ks_bounds_right: 0.037 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.15 

Current progress: 72 percent done.
C1orf198
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.379086e-02	ci left: 7.219903e-01	ci right 7.394751e-01	k: 7308	n:10000
Cons ci ratio: 1.253329e-01	ci left: 8.348941e-02	ci right 9.475129e-02	k: 890	n:10000
KS ci ratio: 1.204951e-01	ci left: 8.990526e-02	ci right 1.015315e-01	k: 956	n:10000
C1orf198   10000 perm   2 sec   (6347 perm/sec)   p_kst 9.560000e-02   p_cons 8.900000e-02   p_joint 7.308000e-01

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 8.887212e-02	ci left: 8.469674e-02	ci right 9.262332e-02	k: 1772	n:20000
KS ci ratio: 8.478879e-02	ci left: 9.244163e-02	ci right 1.006761e-01	k: 1930	n:20000
C1orf198   20000 perm   3 sec   (5744 perm/sec)   p_kst 9.650000e-02   p_cons 8.860000e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000023/C1orf198.2_1000_20000_0.0965_0.0886_1.png
                gene_name: C1orf198
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.097 
        ci_ks_bounds_left: 0.092 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.089 
      ci_cons_bounds_left: 0.085 
     ci_cons_bounds_right: 0.093 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
C1orf59
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.201258e-02	ci left: 2.765622e-01	ci right 2.943629e-01	k: 2854	n:10000
Cons ci ratio: 8.944993e-02	ci left: 1.538460e-01	ci right 1.683520e-01	k: 1610	n:10000
KS ci ratio: 7.231530e-02	ci left: 2.188203e-01	ci right 2.353390e-01	k: 2270	n:10000
C1orf59   10000 perm   2 sec   (5093 perm/sec)   p_kst 2.270000e-01   p_cons 1.610000e-01   p_joint 2.854000e-01

Outputting figure to mutsig2_images.part000000000023/C1orf59.2_1210_10000_0.227_0.161_0.2854.png
                gene_name: C1orf59
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 79 percent done.
C1orf83
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.339214e-02	ci left: 7.286569e-01	ci right 7.460046e-01	k: 7374	n:10000
Cons ci ratio: 9.427484e-02	ci left: 1.404072e-01	ci right 1.543988e-01	k: 1473	n:10000
KS ci ratio: 2.642698e-02	ci left: 6.783117e-01	ci right 6.965790e-01	k: 6875	n:10000
C1orf83   10000 perm   2 sec   (6650 perm/sec)   p_kst 6.875000e-01   p_cons 1.473000e-01   p_joint 7.374000e-01

Outputting figure to mutsig2_images.part000000000023/C1orf83.2_643_10000_0.6875_0.1473_0.7374.png
                gene_name: C1orf83
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 83 percent done.
C1orf88
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.230402e-02	ci left: 5.858039e-01	ci right 6.051404e-01	k: 5955	n:10000
Cons ci ratio: 4.371700e-02	ci left: 4.358254e-01	ci right 4.554063e-01	k: 4456	n:10000
KS ci ratio: 5.402496e-02	ci left: 3.354805e-01	ci right 3.542099e-01	k: 3448	n:10000
C1orf88   10000 perm   2 sec   (6657 perm/sec)   p_kst 3.448000e-01   p_cons 4.456000e-01   p_joint 5.955000e-01

Outputting figure to mutsig2_images.part000000000023/C1orf88.2_600_10000_0.3448_0.4456_0.5955.png
                gene_name: C1orf88
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 86 percent done.
C2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.103695e-01	ci left: 1.326304e-02	ci right 1.822489e-02	k: 156	n:10000
Cons ci ratio: 3.940154e-01	ci left: 7.872887e-03	ci right 1.182054e-02	k: 97	n:10000
KS ci ratio: 3.183681e-02	ci left: 5.928296e-01	ci right 6.121107e-01	k: 6025	n:10000
C2   10000 perm   2 sec   (6060 perm/sec)   p_kst 6.025000e-01   p_cons 9.700000e-03   p_joint 1.560000e-02

Joint ci ratio: 2.146584e-01	ci left: 1.463801e-02	ci right 1.820458e-02	k: 327	n:20000
Cons ci ratio: 2.786178e-01	ci left: 8.434855e-03	ci right 1.121045e-02	k: 195	n:20000
KS ci ratio: 2.225095e-02	ci left: 6.012941e-01	ci right 6.148745e-01	k: 12162	n:20000
C2   20000 perm   4 sec   (5390 perm/sec)   p_kst 6.081000e-01   p_cons 9.750000e-03   p_joint 1.635000e-02

Joint ci ratio: 1.915552e-01	ci left: 1.244696e-02	ci right 1.511510e-02	k: 412	n:30000
Cons ci ratio: 2.306832e-01	ci left: 8.433355e-03	ci right 1.066317e-02	k: 285	n:30000
KS ci ratio: 1.828907e-02	ci left: 5.993748e-01	ci right 6.104715e-01	k: 18148	n:30000
C2   30000 perm   6 sec   (5139 perm/sec)   p_kst 6.049333e-01   p_cons 9.500000e-03   p_joint 1.373333e-02

Joint ci ratio: 1.693020e-01	ci left: 1.210449e-02	ci right 1.436699e-02	k: 528	n:40000
Cons ci ratio: 2.012037e-01	ci left: 8.453845e-03	ci right 1.036839e-02	k: 375	n:40000
KS ci ratio: 1.577633e-02	ci left: 6.020181e-01	ci right 6.116164e-01	k: 24273	n:40000
C2   40000 perm   8 sec   (4996 perm/sec)   p_kst 6.068250e-01   p_cons 9.375000e-03   p_joint 1.320000e-02

Joint ci ratio: 1.589347e-01	ci left: 1.106401e-02	ci right 1.299327e-02	k: 600	n:50000
Cons ci ratio: 1.807405e-01	ci left: 8.477237e-03	ci right 1.018046e-02	k: 465	n:50000
KS ci ratio: 1.408440e-02	ci left: 6.034242e-01	ci right 6.120033e-01	k: 30386	n:50000
C2   50000 perm   10 sec   (4882 perm/sec)   p_kst 6.077200e-01   p_cons 9.300000e-03   p_joint 1.200000e-02

Joint ci ratio: 1.464496e-01	ci left: 1.093524e-02	ci right 1.267913e-02	k: 707	n:60000
Cons ci ratio: 1.645776e-01	ci left: 8.595387e-03	ci right 1.015262e-02	k: 561	n:60000
KS ci ratio: 1.284524e-02	ci left: 6.042472e-01	ci right 6.120757e-01	k: 36490	n:60000
C2   60000 perm   13 sec   (4779 perm/sec)   p_kst 6.081667e-01   p_cons 9.350000e-03   p_joint 1.178333e-02

Joint ci ratio: 1.484935e-01	ci left: 9.124760e-03	ci right 1.060201e-02	k: 689	n:70000
Cons ci ratio: 1.550989e-01	ci left: 8.341128e-03	ci right 9.757161e-03	k: 632	n:70000
KS ci ratio: 1.188944e-02	ci left: 6.046581e-01	ci right 6.119044e-01	k: 42580	n:70000
C2   70000 perm   15 sec   (4654 perm/sec)   p_kst 6.082857e-01   p_cons 9.028571e-03   p_joint 9.842857e-03

Joint ci ratio: 1.385991e-01	ci left: 9.213441e-03	ci right 1.059745e-02	k: 791	n:80000
Cons ci ratio: 1.445213e-01	ci left: 8.453581e-03	ci right 9.782384e-03	k: 728	n:80000
KS ci ratio: 1.112328e-02	ci left: 6.048197e-01	ci right 6.115974e-01	k: 48657	n:80000
C2   80000 perm   18 sec   (4568 perm/sec)   p_kst 6.082125e-01   p_cons 9.100000e-03   p_joint 9.887500e-03

Joint ci ratio: 1.409378e-01	ci left: 7.921283e-03	ci right 9.132937e-03	k: 766	n:90000
Cons ci ratio: 1.362665e-01	ci left: 8.489920e-03	ci right 9.742026e-03	k: 819	n:90000
KS ci ratio: 1.047496e-02	ci left: 6.055693e-01	ci right 6.119571e-01	k: 54789	n:90000
C2   90000 perm   20 sec   (4490 perm/sec)   p_kst 6.087667e-01   p_cons 9.100000e-03   p_joint 8.511111e-03

Joint ci ratio: 1.239669e-01	ci left: 9.285927e-03	ci right 1.052275e-02	k: 989	n:100000
Cons ci ratio: 1.294253e-01	ci left: 8.501364e-03	ci right 9.687372e-03	k: 908	n:100000
KS ci ratio: 9.926306e-03	ci left: 6.062678e-01	ci right 6.123258e-01	k: 60930	n:100000
C2   100000 perm   23 sec   (4412 perm/sec)   p_kst 6.093000e-01   p_cons 9.080000e-03   p_joint 9.890000e-03

Joint ci ratio: 1.179248e-01	ci left: 9.358633e-03	ci right 1.054015e-02	k: 1093	n:110000
Cons ci ratio: 1.234583e-01	ci left: 8.520828e-03	ci right 9.650738e-03	k: 998	n:110000
KS ci ratio: 9.466901e-03	ci left: 6.062819e-01	ci right 6.120578e-01	k: 67009	n:110000
C2   110000 perm   25 sec   (4338 perm/sec)   p_kst 6.091727e-01   p_cons 9.072727e-03   p_joint 9.936364e-03

Joint ci ratio: 1.132140e-01	ci left: 9.331339e-03	ci right 1.045920e-02	k: 1186	n:120000
Cons ci ratio: 1.183569e-01	ci left: 8.521918e-03	ci right 9.602008e-03	k: 1086	n:120000
KS ci ratio: 9.053048e-03	ci left: 6.069749e-01	ci right 6.125031e-01	k: 73169	n:120000
C2   120000 perm   28 sec   (4269 perm/sec)   p_kst 6.097417e-01   p_cons 9.050000e-03   p_joint 9.883333e-03

Joint ci ratio: 1.181249e-01	ci left: 7.903560e-03	ci right 8.903170e-03	k: 1091	n:130000
Cons ci ratio: 1.144309e-01	ci left: 8.433960e-03	ci right 9.465046e-03	k: 1162	n:130000
KS ci ratio: 8.712439e-03	ci left: 6.062872e-01	ci right 6.116002e-01	k: 79163	n:130000
C2   130000 perm   31 sec   (4199 perm/sec)   p_kst 6.089462e-01   p_cons 8.938462e-03   p_joint 8.392308e-03

Joint ci ratio: 1.142205e-01	ci left: 7.866094e-03	ci right 8.825864e-03	k: 1167	n:140000
Cons ci ratio: 1.108260e-01	ci left: 8.366024e-03	ci right 9.354479e-03	k: 1239	n:140000
KS ci ratio: 8.393439e-03	ci left: 6.065024e-01	ci right 6.116216e-01	k: 85269	n:140000
C2   140000 perm   34 sec   (4133 perm/sec)   p_kst 6.090643e-01   p_cons 8.850000e-03   p_joint 8.335714e-03

Joint ci ratio: 1.095744e-01	ci left: 7.996209e-03	ci right 8.929607e-03	k: 1268	n:150000
Cons ci ratio: 1.066869e-01	ci left: 8.443871e-03	ci right 9.401922e-03	k: 1337	n:150000
KS ci ratio: 8.109931e-03	ci left: 6.065251e-01	ci right 6.114707e-01	k: 91350	n:150000
C2   150000 perm   37 sec   (4068 perm/sec)   p_kst 6.090000e-01   p_cons 8.913333e-03   p_joint 8.453333e-03

Joint ci ratio: 1.112047e-01	ci left: 7.277508e-03	ci right 8.140475e-03	k: 1232	n:160000
Cons ci ratio: 1.033796e-01	ci left: 8.445596e-03	ci right 9.372331e-03	k: 1424	n:160000
KS ci ratio: 7.850658e-03	ci left: 6.067103e-01	ci right 6.114983e-01	k: 97457	n:160000
C2   160000 perm   40 sec   (4008 perm/sec)   p_kst 6.091062e-01   p_cons 8.900000e-03   p_joint 7.700000e-03

Joint ci ratio: 1.078042e-01	ci left: 7.301402e-03	ci right 8.139046e-03	k: 1311	n:170000
Cons ci ratio: 1.002950e-01	ci left: 8.458995e-03	ci right 9.357873e-03	k: 1513	n:170000
KS ci ratio: 7.616078e-03	ci left: 6.067933e-01	ci right 6.114382e-01	k: 103550	n:170000
C2   170000 perm   43 sec   (3948 perm/sec)   p_kst 6.091176e-01   p_cons 8.900000e-03   p_joint 7.711765e-03

Joint ci ratio: 1.049259e-01	ci left: 7.290533e-03	ci right 8.103221e-03	k: 1384	n:180000
Cons ci ratio: 9.744039e-02	ci left: 8.476691e-03	ci right 9.350347e-03	k: 1603	n:180000
KS ci ratio: 7.398666e-03	ci left: 6.070415e-01	ci right 6.115550e-01	k: 109674	n:180000
C2   180000 perm   46 sec   (3890 perm/sec)   p_kst 6.093000e-01   p_cons 8.905556e-03   p_joint 7.688889e-03

Joint ci ratio: 1.000101e-01	ci left: 7.619722e-03	ci right 8.426976e-03	k: 1523	n:190000
Cons ci ratio: 9.484466e-02	ci left: 8.487710e-03	ci right 9.337902e-03	k: 1692	n:190000
KS ci ratio: 7.201176e-03	ci left: 6.071124e-01	ci right 6.115053e-01	k: 115769	n:190000
C2   190000 perm   50 sec   (3834 perm/sec)   p_kst 6.093105e-01   p_cons 8.905263e-03   p_joint 8.015789e-03

Joint ci ratio: 9.911685e-02	ci left: 7.375204e-03	ci right 8.149166e-03	k: 1551	n:200000
Cons ci ratio: 9.226324e-02	ci left: 8.532103e-03	ci right 9.362224e-03	k: 1788	n:200000
KS ci ratio: 7.022681e-03	ci left: 6.069074e-01	ci right 6.111895e-01	k: 121810	n:200000
C2   200000 perm   53 sec   (3778 perm/sec)   p_kst 6.090500e-01   p_cons 8.940000e-03   p_joint 7.755000e-03

Outputting figure to mutsig2_images.part000000000023/C2.2_2408_200000_0.60905_0.00894_0.007755.png
                gene_name: C2
               theta_stop: 0.099 
                    nperm: 200000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.0089 
      ci_cons_bounds_left: 0.0085 
     ci_cons_bounds_right: 0.0094 
                  p_joint: 0.0078 
     ci_joint_bounds_left: 0.0074 
    ci_joint_bounds_right: 0.0081 

Current progress: 90 percent done.
C20orf111
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.170919e-03	ci left: 9.866479e-01	ci right 9.908601e-01	k: 9889	n:10000
Cons ci ratio: 5.365600e-03	ci left: 9.788782e-01	ci right 9.842360e-01	k: 9817	n:10000
KS ci ratio: 1.277098e-02	ci left: 8.981605e-01	ci right 9.098029e-01	k: 9041	n:10000
C20orf111   10000 perm   2 sec   (6645 perm/sec)   p_kst 9.041000e-01   p_cons 9.817000e-01   p_joint 9.889000e-01

Outputting figure to mutsig2_images.part000000000023/C20orf111.2_891_10000_0.9041_0.9817_0.9889.png
                gene_name: C20orf111
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 93 percent done.
C20orf141
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.553251e-02	ci left: 1.371732e-01	ci right 1.510349e-01	k: 1440	n:10000
Cons ci ratio: 7.740754e-02	ci left: 1.961390e-01	ci right 2.120337e-01	k: 2040	n:10000
KS ci ratio: 9.715309e-02	ci left: 1.331568e-01	ci right 1.468536e-01	k: 1399	n:10000
C20orf141   10000 perm   1 sec   (6982 perm/sec)   p_kst 1.399000e-01   p_cons 2.040000e-01   p_joint 1.440000e-01

Outputting figure to mutsig2_images.part000000000023/C20orf141.2_506_10000_0.1399_0.204_0.144.png
                gene_name: C20orf141
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 97 percent done.
C20orf185
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.599094e-02	ci left: 4.109985e-01	ci right 4.304477e-01	k: 4207	n:10000
Cons ci ratio: 2.323517e-02	ci left: 7.312838e-01	ci right 7.485762e-01	k: 7400	n:10000
KS ci ratio: 5.204093e-02	ci left: 3.524727e-01	ci right 3.714078e-01	k: 3619	n:10000
C20orf185   10000 perm   2 sec   (6227 perm/sec)   p_kst 3.619000e-01   p_cons 7.400000e-01   p_joint 4.207000e-01

Outputting figure to mutsig2_images.part000000000023/C20orf185.2_1491_10000_0.3619_0.74_0.4207.png
                gene_name: C20orf185
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000023
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 23 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1655>
Subject: Job 8003911: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1655>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000024> was used as the working directory.
Started at Sun Nov 11 15:04:11 2012
Results reported at Sun Nov 11 15:12:02 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000024.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000024.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 24  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000024.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    505.53 sec.
    Max Memory :      4762 MB
    Max Swap   :      7048 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
24
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 24
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 24: processing genes 2082 - 2171
Calculating significance of each gene.
Using projection method.
2082	C20orf24	4.359105e-01
2083	C20orf26	7.298254e-06
2084	C20orf27	1.200467e-01
2085	C20orf29	3.611335e-01
2086	C20orf3	8.451985e-01
2087	C20orf30	3.066377e-01
2088	C20orf4	7.149771e-01
2089	C20orf43	5.387799e-01
2090	C20orf46	1.680586e-02
2091	C20orf54	3.471225e-01
2092	C20orf7	3.328360e-01
2093	C20orf70	7.012819e-01
2094	C20orf71	3.920124e-01
2095	C20orf72	5.391797e-01
2096	C20orf79	1.411059e-01
2097	C20orf85	1
2098	C20orf94	1.330980e-01
2099	C20orf96	3.312629e-01
2100	C21orf2	1
2101	C21orf29	1
2102	C21orf33	1
2103	C21orf45	5.616167e-01
2104	C21orf56	1
2105	C21orf57	3.834341e-01
2106	C21orf58	1
2107	C21orf59	1
2108	C21orf63	8.094715e-01
2109	C21orf7	1
2110	C21orf70	1
2111	C21orf91	5.101754e-01
2112	C22orf13	4.150599e-01
2113	C22orf15	1
2114	C22orf23	1
2115	C22orf24	1
2116	C22orf25	1
2117	C22orf28	6.308589e-01
2118	C22orf29	6.732824e-01
2119	C22orf31	6.301744e-01
2120	C22orf32	1
2121	C22orf33	5.251498e-01
2122	C22orf36	4.267071e-01
2123	C22orf39	1
2124	C22orf40	1
2125	C22orf42	2.656654e-02
2126	C22orf43	3.420628e-01
2127	C22orf9	5.183433e-01
2128	C2CD2	1
2129	C2CD2L	5.996847e-01
2130	C2CD3	6.943534e-01
2131	C2orf15	1
2132	C2orf16	3.863999e-01
2133	C2orf18	1
2134	C2orf24	5.128525e-01
2135	C2orf28	5.186565e-01
2136	C2orf29	4.919383e-01
2137	C2orf3	1
2138	C2orf34	5.781391e-01
2139	C2orf39	5.567438e-01
2140	C2orf40	7.559558e-02
2141	C2orf42	1
2142	C2orf43	7.523855e-01
2143	C2orf44	8.921378e-01
2144	C2orf47	1
2145	C2orf48	1
2146	C2orf49	1
2147	C2orf50	1
2148	C2orf51	1
2149	C2orf53	1
2150	C2orf54	1
2151	C2orf55	1
2152	C2orf56	1
2153	C2orf57	1
2154	C2orf60	1
2155	C2orf61	2.130461e-01
2156	C2orf62	1
2157	C2orf63	5.298457e-02
2158	C2orf64	2.389627e-01
2159	C2orf65	1
2160	C2orf66	2.235477e-01
2161	C2orf67	2.240800e-01
2162	C2orf68	1
2163	C2orf69	5.566892e-01
2164	C2orf7	2.088574e-01
2165	C2orf70	5.657035e-01
2166	C2orf71	1
2167	C2orf73	1
2168	C2orf76	1.480840e-01
2169	C2orf77	8.408895e-01
2170	C2orf78	9.147719e-01
2171	C2orf79	4.887310e-01
Done

Running MutSig 2:
Scatter job 24: processing genes 2082 - 2171
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
C20orf26
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.601820e-01	ci left: 5.195823e-02	ci right 6.110226e-02	k: 564	n:10000
Cons ci ratio: 5.554127e-02	ci left: 3.231670e-01	ci right 3.417307e-01	k: 3324	n:10000
KS ci ratio: 2.463123e-01	ci left: 2.165304e-02	ci right 2.782806e-02	k: 246	n:10000
C20orf26   10000 perm   2 sec   (4123 perm/sec)   p_kst 2.460000e-02   p_cons 3.324000e-01   p_joint 5.640000e-02

Joint ci ratio: 1.115521e-01	ci left: 5.489734e-02	ci right 6.143185e-02	k: 1162	n:20000
Cons ci ratio: 3.947352e-02	ci left: 3.236824e-01	ci right 3.367670e-01	k: 6604	n:20000
KS ci ratio: 1.732762e-01	ci left: 2.278476e-02	ci right 2.715484e-02	k: 498	n:20000
C20orf26   20000 perm   7 sec   (2770 perm/sec)   p_kst 2.490000e-02   p_cons 3.302000e-01   p_joint 5.810000e-02

Joint ci ratio: 9.630694e-02	ci left: 4.980752e-02	ci right 5.487962e-02	k: 1569	n:30000
Cons ci ratio: 3.251503e-02	ci left: 3.210280e-01	ci right 3.316723e-01	k: 9790	n:30000
KS ci ratio: 1.428069e-01	ci left: 2.274795e-02	ci right 2.627829e-02	k: 734	n:30000
C20orf26   30000 perm   10 sec   (2936 perm/sec)   p_kst 2.446667e-02   p_cons 3.263333e-01   p_joint 5.230000e-02

Joint ci ratio: 9.337536e-02	ci left: 4.022615e-02	ci right 4.419066e-02	k: 1687	n:40000
Cons ci ratio: 2.827720e-02	ci left: 3.199122e-01	ci right 3.291133e-01	k: 12980	n:40000
KS ci ratio: 1.249219e-01	ci left: 2.252228e-02	ci right 2.554736e-02	k: 960	n:40000
C20orf26   40000 perm   13 sec   (3056 perm/sec)   p_kst 2.400000e-02   p_cons 3.245000e-01   p_joint 4.217500e-02

Joint ci ratio: 7.716438e-02	ci left: 4.718299e-02	ci right 5.098958e-02	k: 2453	n:50000
Cons ci ratio: 2.448275e-02	ci left: 3.347705e-01	ci right 3.430882e-01	k: 16946	n:50000
KS ci ratio: 1.117934e-01	ci left: 2.265673e-02	ci right 2.535892e-02	k: 1199	n:50000
C20orf26   50000 perm   16 sec   (3121 perm/sec)   p_kst 2.398000e-02   p_cons 3.389200e-01   p_joint 4.906000e-02

Joint ci ratio: 7.450649e-02	ci left: 4.245453e-02	ci right 4.575641e-02	k: 2645	n:60000
Cons ci ratio: 2.244334e-02	ci left: 3.332673e-01	ci right 3.408485e-01	k: 20223	n:60000
KS ci ratio: 1.026020e-01	ci left: 2.253011e-02	ci right 2.498292e-02	k: 1424	n:60000
C20orf26   60000 perm   19 sec   (3157 perm/sec)   p_kst 2.373333e-02   p_cons 3.370500e-01   p_joint 4.408333e-02

Joint ci ratio: 6.525193e-02	ci left: 4.742650e-02	ci right 5.063959e-02	k: 3431	n:70000
Cons ci ratio: 2.074577e-02	ci left: 3.342532e-01	ci right 3.412745e-01	k: 23643	n:70000
KS ci ratio: 9.532935e-02	ci left: 2.246021e-02	ci right 2.472238e-02	k: 1650	n:70000
C20orf26   70000 perm   22 sec   (3172 perm/sec)   p_kst 2.357143e-02   p_cons 3.377571e-01   p_joint 4.901429e-02

Outputting figure to mutsig2_images.part000000000024/C20orf26.21_3850_70000_0.023571_0.33776_0.049014.png
                gene_name: C20orf26
               theta_stop: 0.095 
                    nperm: 70000 
                     p_ks: 0.024 
        ci_ks_bounds_left: 0.022 
       ci_ks_bounds_right: 0.025 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.049 
     ci_joint_bounds_left: 0.047 
    ci_joint_bounds_right: 0.051 

Current progress: 3 percent done.
C2orf16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.554271e-01	ci left: 5.513502e-02	ci right 6.452344e-02	k: 597	n:10000
Cons ci ratio: 3.079670e-02	ci left: 6.086951e-01	ci right 6.278360e-01	k: 6183	n:10000
KS ci ratio: 2.676375e-01	ci left: 1.818649e-02	ci right 2.389730e-02	k: 209	n:10000
C2orf16   10000 perm   2 sec   (4171 perm/sec)   p_kst 2.090000e-02   p_cons 6.183000e-01   p_joint 5.970000e-02

Joint ci ratio: 1.255149e-01	ci left: 4.357437e-02	ci right 4.945837e-02	k: 929	n:20000
Cons ci ratio: 2.278207e-02	ci left: 5.899629e-01	ci right 6.036089e-01	k: 11936	n:20000
KS ci ratio: 1.947721e-01	ci left: 1.791431e-02	ci right 2.182703e-02	k: 396	n:20000
C2orf16   20000 perm   5 sec   (3801 perm/sec)   p_kst 1.980000e-02   p_cons 5.968000e-01   p_joint 4.645000e-02

Joint ci ratio: 8.427486e-02	ci left: 6.442489e-02	ci right 7.012592e-02	k: 2017	n:30000
Cons ci ratio: 1.767135e-02	ci left: 6.157160e-01	ci right 6.267271e-01	k: 18637	n:30000
KS ci ratio: 1.603418e-01	ci left: 1.796530e-02	ci right 2.112871e-02	k: 585	n:30000
C2orf16   30000 perm   8 sec   (3663 perm/sec)   p_kst 1.950000e-02   p_cons 6.212333e-01   p_joint 6.723333e-02

Joint ci ratio: 8.538853e-02	ci left: 4.790890e-02	ci right 5.220672e-02	k: 2001	n:40000
Cons ci ratio: 1.538156e-02	ci left: 6.140695e-01	ci right 6.236132e-01	k: 24754	n:40000
KS ci ratio: 1.392550e-01	ci left: 1.807082e-02	ci right 2.079957e-02	k: 776	n:40000
C2orf16   40000 perm   11 sec   (3575 perm/sec)   p_kst 1.940000e-02   p_cons 6.188500e-01   p_joint 5.002500e-02

Joint ci ratio: 8.393383e-02	ci left: 4.004285e-02	ci right 4.357060e-02	k: 2089	n:50000
Cons ci ratio: 1.441870e-02	ci left: 5.921643e-01	ci right 6.007845e-01	k: 29824	n:50000
KS ci ratio: 1.257641e-01	ci left: 1.786008e-02	ci right 2.027621e-02	k: 952	n:50000
C2orf16   50000 perm   14 sec   (3495 perm/sec)   p_kst 1.904000e-02   p_cons 5.964800e-01   p_joint 4.178000e-02

Joint ci ratio: 7.715212e-02	ci left: 3.965629e-02	ci right 4.285495e-02	k: 2474	n:60000
Cons ci ratio: 1.315052e-02	ci left: 5.929788e-01	ci right 6.008451e-01	k: 35815	n:60000
KS ci ratio: 1.149912e-01	ci left: 1.790638e-02	ci right 2.010716e-02	k: 1139	n:60000
C2orf16   60000 perm   17 sec   (3439 perm/sec)   p_kst 1.898333e-02   p_cons 5.969167e-01   p_joint 4.123333e-02

Joint ci ratio: 6.455282e-02	ci left: 4.842514e-02	ci right 5.166943e-02	k: 3502	n:70000
Cons ci ratio: 1.217367e-02	ci left: 5.933267e-01	ci right 6.006081e-01	k: 41788	n:70000
KS ci ratio: 1.068716e-01	ci left: 1.784844e-02	ci right 1.987744e-02	k: 1319	n:70000
C2orf16   70000 perm   21 sec   (3362 perm/sec)   p_kst 1.884286e-02   p_cons 5.969714e-01   p_joint 5.002857e-02

Joint ci ratio: 5.940167e-02	ci left: 5.008942e-02	ci right 5.316820e-02	k: 4129	n:80000
Cons ci ratio: 1.141222e-02	ci left: 5.925149e-01	ci right 5.993281e-01	k: 47674	n:80000
KS ci ratio: 9.958551e-02	ci left: 1.805298e-02	ci right 1.995713e-02	k: 1519	n:80000
C2orf16   80000 perm   24 sec   (3282 perm/sec)   p_kst 1.898750e-02   p_cons 5.959250e-01   p_joint 5.161250e-02

Outputting figure to mutsig2_images.part000000000024/C2orf16.16_5959_80000_0.018988_0.59593_0.051612.png
                gene_name: C2orf16
               theta_stop: 0.100 
                    nperm: 80000 
                     p_ks: 0.019 
        ci_ks_bounds_left: 0.018 
       ci_ks_bounds_right: 0.020 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.052 
     ci_joint_bounds_left: 0.050 
    ci_joint_bounds_right: 0.053 

Current progress: 7 percent done.
C2CD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.198987e-02	ci left: 5.905209e-01	ci right 6.098207e-01	k: 6002	n:10000
Cons ci ratio: 2.958900e-02	ci left: 6.274864e-01	ci right 6.464337e-01	k: 6370	n:10000
KS ci ratio: 5.042447e-02	ci left: 3.670904e-01	ci right 3.861815e-01	k: 3766	n:10000
C2CD3   10000 perm   3 sec   (3566 perm/sec)   p_kst 3.766000e-01   p_cons 6.370000e-01   p_joint 6.002000e-01

Outputting figure to mutsig2_images.part000000000024/C2CD3.10_6016_10000_0.3766_0.637_0.6002.png
                gene_name: C2CD3
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 10 percent done.
C2orf78
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.289034e-02	ci left: 2.709178e-01	ci right 2.886106e-01	k: 2797	n:10000
Cons ci ratio: 2.929540e-02	ci left: 6.321112e-01	ci right 6.510063e-01	k: 6416	n:10000
KS ci ratio: 9.553251e-02	ci left: 1.371732e-01	ci right 1.510349e-01	k: 1440	n:10000
C2orf78   10000 perm   2 sec   (5055 perm/sec)   p_kst 1.440000e-01   p_cons 6.416000e-01   p_joint 2.797000e-01

Outputting figure to mutsig2_images.part000000000024/C2orf78.8_2781_10000_0.144_0.6416_0.2797.png
                gene_name: C2orf78
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 14 percent done.
C2orf67
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.392529e-02	ci left: 5.619317e-01	ci right 5.814265e-01	k: 5717	n:10000
KS ci ratio: 6.364973e-03	ci left: 9.711128e-01	ci right 9.774068e-01	k: 9744	n:10000
C2orf67   10000 perm   2 sec   (5167 perm/sec)   p_kst 9.744000e-01   p_cons 5.717000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000024/C2orf67.6_3020_10000_0.9744_0.5717_1.png
                gene_name: C2orf67
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 17 percent done.
C2orf63
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.043788e-01	ci left: 1.171118e-01	ci right 1.301083e-01	k: 1235	n:10000
Cons ci ratio: 6.151475e-02	ci left: 2.798308e-01	ci right 2.976924e-01	k: 2887	n:10000
KS ci ratio: 1.181211e-01	ci left: 9.331107e-02	ci right 1.051236e-01	k: 991	n:10000
C2orf63   10000 perm   2 sec   (4117 perm/sec)   p_kst 9.910000e-02   p_cons 2.887000e-01   p_joint 1.235000e-01

Joint ci ratio: 6.291445e-02	ci left: 1.574116e-01	ci right 1.676867e-01	k: 3250	n:20000
Cons ci ratio: 4.347125e-02	ci left: 2.827238e-01	ci right 2.953376e-01	k: 5780	n:20000
KS ci ratio: 8.164300e-02	ci left: 9.911488e-02	ci right 1.076008e-01	k: 2066	n:20000
C2orf63   20000 perm   5 sec   (4146 perm/sec)   p_kst 1.033000e-01   p_cons 2.890000e-01   p_joint 1.625000e-01

Outputting figure to mutsig2_images.part000000000024/C2orf63.5_1805_20000_0.1033_0.289_0.1625.png
                gene_name: C2orf63
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.099 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 21 percent done.
C20orf46
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.435967e-02	ci left: 4.286440e-01	ci right 4.481919e-01	k: 4384	n:10000
Cons ci ratio: 2.420449e-03	ci left: 9.949036e-01	ci right 9.973936e-01	k: 9963	n:10000
KS ci ratio: 1.081572e-01	ci left: 1.097862e-01	ci right 1.224384e-01	k: 1160	n:10000
C20orf46   10000 perm   2 sec   (6168 perm/sec)   p_kst 1.160000e-01   p_cons 9.963000e-01   p_joint 4.384000e-01

Joint ci ratio: 4.767272e-02	ci left: 2.465895e-01	ci right 2.586825e-01	k: 5052	n:20000
Cons ci ratio: 1.654258e-03	ci left: 9.955800e-01	ci right 9.972706e-01	k: 19930	n:20000
KS ci ratio: 7.631289e-02	ci left: 1.120847e-01	ci right 1.210271e-01	k: 2330	n:20000
C20orf46   20000 perm   4 sec   (5507 perm/sec)   p_kst 1.165000e-01   p_cons 9.965000e-01   p_joint 2.526000e-01

Outputting figure to mutsig2_images.part000000000024/C20orf46.4_779_20000_0.1165_0.9965_0.2526.png
                gene_name: C20orf46
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 24 percent done.
C22orf42
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.984796e-02	ci left: 1.863882e-01	ci right 2.019904e-01	k: 1941	n:10000
KS ci ratio: 9.399846e-03	ci left: 9.410771e-01	ci right 9.500611e-01	k: 9457	n:10000
C22orf42   10000 perm   1 sec   (6936 perm/sec)   p_kst 9.457000e-01   p_cons 1.941000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000024/C22orf42.4_792_10000_0.9457_0.1941_1.png
                gene_name: C22orf42
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 28 percent done.
C2orf3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.776290e-02	ci left: 1.316879e-01	ci right 1.453234e-01	k: 1384	n:10000
Cons ci ratio: 1.113278e-01	ci left: 1.041267e-01	ci right 1.165013e-01	k: 1102	n:10000
KS ci ratio: 1.525972e-01	ci left: 5.715872e-02	ci right 6.669845e-02	k: 618	n:10000
C2orf3   10000 perm   2 sec   (5548 perm/sec)   p_kst 6.180000e-02   p_cons 1.102000e-01   p_joint 1.384000e-01

Joint ci ratio: 1.009921e-01	ci left: 6.650160e-02	ci right 7.362401e-02	k: 1400	n:20000
Cons ci ratio: 7.955555e-02	ci left: 1.039271e-01	ci right 1.125872e-01	k: 2164	n:20000
KS ci ratio: 1.096623e-01	ci left: 5.674781e-02	ci right 6.338081e-02	k: 1200	n:20000
C2orf3   20000 perm   4 sec   (4978 perm/sec)   p_kst 6.000000e-02   p_cons 1.082000e-01   p_joint 7.000000e-02

Joint ci ratio: 7.258673e-02	ci left: 8.537492e-02	ci right 9.183834e-02	k: 2657	n:30000
Cons ci ratio: 6.463962e-02	ci left: 1.056591e-01	ci right 1.127501e-01	k: 3275	n:30000
KS ci ratio: 8.892414e-02	ci left: 5.812189e-02	ci right 6.356354e-02	k: 1824	n:30000
C2orf3   30000 perm   6 sec   (4803 perm/sec)   p_kst 6.080000e-02   p_cons 1.091667e-01   p_joint 8.856667e-02

Outputting figure to mutsig2_images.part000000000024/C2orf3.4_2414_30000_0.0608_0.10917_0.088567.png
                gene_name: C2orf3
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.061 
        ci_ks_bounds_left: 0.058 
       ci_ks_bounds_right: 0.064 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.089 
     ci_joint_bounds_left: 0.085 
    ci_joint_bounds_right: 0.092 

Current progress: 31 percent done.
C2orf71
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.147127e-02	ci left: 3.575431e-01	ci right 3.765344e-01	k: 3670	n:10000
Cons ci ratio: 5.438552e-02	ci left: 3.325008e-01	ci right 3.511914e-01	k: 3418	n:10000
KS ci ratio: 4.726880e-02	ci left: 3.977478e-01	ci right 4.171061e-01	k: 4074	n:10000
C2orf71   10000 perm   2 sec   (5298 perm/sec)   p_kst 4.074000e-01   p_cons 3.418000e-01   p_joint 3.670000e-01

Outputting figure to mutsig2_images.part000000000024/C2orf71.4_3875_10000_0.4074_0.3418_0.367.png
                gene_name: C2orf71
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 34 percent done.
C20orf71
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.166482e-02	ci left: 2.788403e-01	ci right 2.966835e-01	k: 2877	n:10000
Cons ci ratio: 1.097134e-01	ci left: 1.069558e-01	ci right 1.194705e-01	k: 1131	n:10000
KS ci ratio: 3.775496e-02	ci left: 5.088528e-01	ci right 5.285363e-01	k: 5187	n:10000
C20orf71   10000 perm   2 sec   (6609 perm/sec)   p_kst 5.187000e-01   p_cons 1.131000e-01   p_joint 2.877000e-01

Joint ci ratio: 3.243357e-02	ci left: 4.151920e-01	ci right 4.289307e-01	k: 8441	n:20000
Cons ci ratio: 7.676089e-02	ci left: 1.109048e-01	ci right 1.198074e-01	k: 2306	n:20000
KS ci ratio: 2.683804e-02	ci left: 5.091472e-01	ci right 5.230482e-01	k: 10322	n:20000
C20orf71   20000 perm   3 sec   (5863 perm/sec)   p_kst 5.161000e-01   p_cons 1.153000e-01   p_joint 4.220500e-01

Outputting figure to mutsig2_images.part000000000024/C20orf71.3_793_20000_0.5161_0.1153_0.42205.png
                gene_name: C20orf71
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.43 

Current progress: 38 percent done.
C20orf94
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.082601e-03	ci left: 9.552412e-01	ci right 9.630885e-01	k: 9593	n:10000
KS ci ratio: 2.406905e-02	ci left: 7.173453e-01	ci right 7.349227e-01	k: 7262	n:10000
C20orf94   10000 perm   2 sec   (6398 perm/sec)   p_kst 7.262000e-01   p_cons 9.593000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000024/C20orf94.3_1253_10000_0.7262_0.9593_1.png
                gene_name: C20orf94
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 41 percent done.
C22orf9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.129120e-02	ci left: 7.638510e-01	ci right 7.803902e-01	k: 7722	n:10000
KS ci ratio: 3.378007e-02	ci left: 5.640372e-01	ci right 5.835198e-01	k: 5738	n:10000
C22orf9   10000 perm   2 sec   (6269 perm/sec)   p_kst 5.738000e-01   p_cons 7.722000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000024/C22orf9.3_1338_10000_0.5738_0.7722_1.png
                gene_name: C22orf9
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 45 percent done.
C2CD2L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.688299e-02	ci left: 6.708565e-01	ci right 6.892385e-01	k: 6801	n:10000
Cons ci ratio: 3.020604e-02	ci left: 6.178376e-01	ci right 6.368881e-01	k: 6274	n:10000
KS ci ratio: 4.953441e-02	ci left: 3.754476e-01	ci right 3.946195e-01	k: 3850	n:10000
C2CD2L   10000 perm   2 sec   (5897 perm/sec)   p_kst 3.850000e-01   p_cons 6.274000e-01   p_joint 6.801000e-01

Outputting figure to mutsig2_images.part000000000024/C2CD2L.3_2180_10000_0.385_0.6274_0.6801.png
                gene_name: C2CD2L
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 48 percent done.
C2orf39
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.371833e-02	ci left: 7.232022e-01	ci right 7.406625e-01	k: 7320	n:10000
KS ci ratio: 2.460821e-02	ci left: 7.083616e-01	ci right 7.261116e-01	k: 7173	n:10000
C2orf39   10000 perm   2 sec   (5764 perm/sec)   p_kst 7.173000e-01   p_cons 7.320000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000024/C2orf39.3_2291_10000_0.7173_0.732_1.png
                gene_name: C2orf39
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 52 percent done.
C2orf65
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.148972e-01	ci left: 2.873209e-02	ci right 3.574387e-02	k: 321	n:10000
Cons ci ratio: 7.256337e-02	ci left: 2.176360e-01	ci right 2.341240e-01	k: 2258	n:10000
KS ci ratio: 2.272211e-01	ci left: 2.560990e-02	ci right 3.226830e-02	k: 288	n:10000
C2orf65   10000 perm   2 sec   (6053 perm/sec)   p_kst 2.880000e-02   p_cons 2.258000e-01   p_joint 3.210000e-02

Joint ci ratio: 1.335450e-01	ci left: 3.853576e-02	ci right 4.409860e-02	k: 825	n:20000
Cons ci ratio: 5.284672e-02	ci left: 2.100163e-01	ci right 2.214664e-01	k: 4314	n:20000
KS ci ratio: 1.634610e-01	ci left: 2.566144e-02	ci right 3.027716e-02	k: 558	n:20000
C2orf65   20000 perm   4 sec   (5384 perm/sec)   p_kst 2.790000e-02   p_cons 2.157000e-01   p_joint 4.125000e-02

Joint ci ratio: 8.332699e-02	ci left: 6.583024e-02	ci right 7.158696e-02	k: 2060	n:30000
Cons ci ratio: 4.292321e-02	ci left: 2.128426e-01	ci right 2.222122e-01	k: 6525	n:30000
KS ci ratio: 1.385197e-01	ci left: 2.419639e-02	ci right 2.782952e-02	k: 779	n:30000
C2orf65   30000 perm   6 sec   (5118 perm/sec)   p_kst 2.596667e-02   p_cons 2.175000e-01   p_joint 6.866667e-02

Joint ci ratio: 7.855785e-02	ci left: 5.629334e-02	ci right 6.092100e-02	k: 2343	n:40000
Cons ci ratio: 3.726664e-02	ci left: 2.126210e-01	ci right 2.207201e-01	k: 8666	n:40000
KS ci ratio: 1.226523e-01	ci left: 2.337080e-02	ci right 2.644870e-02	k: 995	n:40000
C2orf65   40000 perm   8 sec   (4851 perm/sec)   p_kst 2.487500e-02   p_cons 2.166500e-01   p_joint 5.857500e-02

Joint ci ratio: 9.474882e-02	ci left: 3.152953e-02	ci right 3.468498e-02	k: 1654	n:50000
Cons ci ratio: 3.330829e-02	ci left: 2.132941e-01	ci right 2.205388e-01	k: 10845	n:50000
KS ci ratio: 1.093889e-01	ci left: 2.366863e-02	ci right 2.642689e-02	k: 1251	n:50000
C2orf65   50000 perm   10 sec   (4782 perm/sec)   p_kst 2.502000e-02   p_cons 2.169000e-01   p_joint 3.308000e-02

Joint ci ratio: 8.017321e-02	ci left: 3.677839e-02	ci right 3.986648e-02	k: 2298	n:60000
Cons ci ratio: 3.034101e-02	ci left: 2.143370e-01	ci right 2.209570e-01	k: 13058	n:60000
KS ci ratio: 9.987173e-02	ci left: 2.378171e-02	ci right 2.629786e-02	k: 1501	n:60000
C2orf65   60000 perm   13 sec   (4707 perm/sec)   p_kst 2.501667e-02   p_cons 2.176333e-01   p_joint 3.830000e-02

Outputting figure to mutsig2_images.part000000000024/C2orf65.3_1633_60000_0.025017_0.21763_0.0383.png
                gene_name: C2orf65
               theta_stop: 0.100 
                    nperm: 60000 
                     p_ks: 0.025 
        ci_ks_bounds_left: 0.024 
       ci_ks_bounds_right: 0.026 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.038 
     ci_joint_bounds_left: 0.037 
    ci_joint_bounds_right: 0.040 

Current progress: 55 percent done.
C20orf27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.182535e-01	ci left: 9.311639e-02	ci right 1.049184e-01	k: 989	n:10000
Cons ci ratio: 1.604833e-01	ci left: 5.176584e-02	ci right 6.089478e-02	k: 562	n:10000
KS ci ratio: 1.637446e-01	ci left: 4.974666e-02	ci right 5.871525e-02	k: 541	n:10000
C20orf27   10000 perm   1 sec   (6827 perm/sec)   p_kst 5.410000e-02   p_cons 5.620000e-02   p_joint 9.890000e-02

Joint ci ratio: 1.142902e-01	ci left: 5.236672e-02	ci right 5.876326e-02	k: 1110	n:20000
Cons ci ratio: 1.125313e-01	ci left: 5.397247e-02	ci right 6.045701e-02	k: 1143	n:20000
KS ci ratio: 1.142902e-01	ci left: 5.236672e-02	ci right 5.876326e-02	k: 1110	n:20000
C20orf27   20000 perm   3 sec   (6034 perm/sec)   p_kst 5.550000e-02   p_cons 5.715000e-02   p_joint 5.550000e-02

Joint ci ratio: 9.348168e-02	ci left: 5.277268e-02	ci right 5.798051e-02	k: 1660	n:30000
Cons ci ratio: 9.154307e-02	ci left: 5.495723e-02	ci right 6.026218e-02	k: 1727	n:30000
KS ci ratio: 9.348168e-02	ci left: 5.277268e-02	ci right 5.798051e-02	k: 1660	n:30000
C20orf27   30000 perm   5 sec   (5728 perm/sec)   p_kst 5.533333e-02   p_cons 5.756667e-02   p_joint 5.533333e-02

Outputting figure to mutsig2_images.part000000000024/C20orf27.2_620_30000_0.055333_0.057567_0.055333.png
                gene_name: C20orf27
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.055 
        ci_ks_bounds_left: 0.053 
       ci_ks_bounds_right: 0.058 
                   p_cons: 0.058 
      ci_cons_bounds_left: 0.055 
     ci_cons_bounds_right: 0.060 
                  p_joint: 0.055 
     ci_joint_bounds_left: 0.053 
    ci_joint_bounds_right: 0.058 

Current progress: 59 percent done.
C20orf54
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.135109e-02	ci left: 9.172915e-01	ci right 9.278607e-01	k: 9227	n:10000
Cons ci ratio: 3.237110e-02	ci left: 5.848004e-01	ci right 6.041445e-01	k: 5945	n:10000
KS ci ratio: 1.230957e-02	ci left: 9.045292e-01	ci right 9.158305e-01	k: 9103	n:10000
C20orf54   10000 perm   2 sec   (6363 perm/sec)   p_kst 9.103000e-01   p_cons 5.945000e-01   p_joint 9.227000e-01

Outputting figure to mutsig2_images.part000000000024/C20orf54.2_1426_10000_0.9103_0.5945_0.9227.png
                gene_name: C20orf54
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 62 percent done.
C20orf7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.702584e-01	ci left: 5.284222e-03	ci right 8.612765e-03	k: 68	n:10000
Cons ci ratio: 2.348632e-01	ci left: 2.391158e-02	ci right 3.036784e-02	k: 270	n:10000
KS ci ratio: 4.392673e-01	ci left: 6.170319e-03	ci right 9.725324e-03	k: 78	n:10000
C20orf7   10000 perm   1 sec   (6677 perm/sec)   p_kst 7.800000e-03   p_cons 2.700000e-02   p_joint 6.800000e-03

Joint ci ratio: 4.676974e-01	ci left: 2.685268e-03	ci right 4.364195e-03	k: 69	n:20000
Cons ci ratio: 1.667107e-01	ci left: 2.465375e-02	ci right 2.918520e-02	k: 537	n:20000
KS ci ratio: 3.116120e-01	ci left: 6.627764e-03	ci right 9.118513e-03	k: 156	n:20000
C20orf7   20000 perm   3 sec   (5932 perm/sec)   p_kst 7.800000e-03   p_cons 2.685000e-02   p_joint 3.450000e-03

Joint ci ratio: 7.153210e-01	ci left: 6.474844e-04	ci right 1.388002e-03	k: 29	n:30000
Cons ci ratio: 1.365551e-01	ci left: 2.490510e-02	ci right 2.858732e-02	k: 801	n:30000
KS ci ratio: 2.463869e-01	ci left: 7.335823e-03	ci right 9.427729e-03	k: 250	n:30000
C20orf7   30000 perm   5 sec   (5650 perm/sec)   p_kst 8.333333e-03   p_cons 2.670000e-02   p_joint 9.666667e-04

Joint ci ratio: 6.118797e-01	ci left: 7.145078e-04	ci right 1.361470e-03	k: 40	n:40000
Cons ci ratio: 1.166637e-01	ci left: 2.584639e-02	ci right 2.907270e-02	k: 1097	n:40000
KS ci ratio: 2.158859e-01	ci left: 7.292263e-03	ci right 9.080242e-03	k: 326	n:40000
C20orf7   40000 perm   7 sec   (5462 perm/sec)   p_kst 8.150000e-03   p_cons 2.742500e-02   p_joint 1.000000e-03

Joint ci ratio: 6.821524e-01	ci left: 4.377994e-04	ci right 9.033700e-04	k: 32	n:50000
Cons ci ratio: 1.051178e-01	ci left: 2.563579e-02	ci right 2.849947e-02	k: 1352	n:50000
KS ci ratio: 1.954589e-01	ci left: 7.199768e-03	ci right 8.778158e-03	k: 398	n:50000
C20orf7   50000 perm   9 sec   (5311 perm/sec)   p_kst 7.960000e-03   p_cons 2.704000e-02   p_joint 6.400000e-04

Joint ci ratio: 6.046524e-01	ci left: 4.904150e-04	ci right 9.269059e-04	k: 41	n:60000
Cons ci ratio: 9.564471e-02	ci left: 2.592928e-02	ci right 2.855005e-02	k: 1633	n:60000
KS ci ratio: 1.752827e-01	ci left: 7.541761e-03	ci right 9.006400e-03	k: 495	n:60000
C20orf7   60000 perm   12 sec   (5195 perm/sec)   p_kst 8.250000e-03   p_cons 2.721667e-02   p_joint 6.833333e-04

Joint ci ratio: 4.353004e-01	ci left: 9.063154e-04	ci right 1.422186e-03	k: 80	n:70000
Cons ci ratio: 8.839114e-02	ci left: 2.611929e-02	ci right 2.854868e-02	k: 1912	n:70000
KS ci ratio: 1.608387e-01	ci left: 7.737203e-03	ci right 9.104016e-03	k: 588	n:70000
C20orf7   70000 perm   14 sec   (5093 perm/sec)   p_kst 8.400000e-03   p_cons 2.731429e-02   p_joint 1.142857e-03

Joint ci ratio: 5.190284e-01	ci left: 5.288145e-04	ci right 9.089132e-04	k: 56	n:80000
Cons ci ratio: 8.232089e-02	ci left: 2.642669e-02	ci right 2.870775e-02	k: 2204	n:80000
KS ci ratio: 1.516071e-01	ci left: 7.658889e-03	ci right 8.927158e-03	k: 662	n:80000
C20orf7   80000 perm   16 sec   (5009 perm/sec)   p_kst 8.275000e-03   p_cons 2.755000e-02   p_joint 7.000000e-04

Joint ci ratio: 3.752384e-01	ci left: 9.844840e-04	ci right 1.448628e-03	k: 108	n:90000
Cons ci ratio: 7.776822e-02	ci left: 2.638678e-02	ci right 2.853271e-02	k: 2470	n:90000
KS ci ratio: 1.422531e-01	ci left: 7.771196e-03	ci right 8.971926e-03	k: 752	n:90000
C20orf7   90000 perm   18 sec   (4926 perm/sec)   p_kst 8.355556e-03   p_cons 2.744444e-02   p_joint 1.200000e-03

Joint ci ratio: 3.489995e-01	ci left: 1.040593e-03	ci right 1.489140e-03	k: 125	n:100000
Cons ci ratio: 7.386817e-02	ci left: 2.637729e-02	ci right 2.841024e-02	k: 2738	n:100000
KS ci ratio: 1.344410e-01	ci left: 7.862966e-03	ci right 9.005821e-03	k: 842	n:100000
C20orf7   100000 perm   21 sec   (4844 perm/sec)   p_kst 8.420000e-03   p_cons 2.738000e-02   p_joint 1.250000e-03

Joint ci ratio: 3.253222e-01	ci left: 1.104121e-03	ci right 1.541035e-03	k: 144	n:110000
Cons ci ratio: 7.005967e-02	ci left: 2.670236e-02	ci right 2.864993e-02	k: 3043	n:110000
KS ci ratio: 1.276511e-01	ci left: 7.957131e-03	ci right 9.050838e-03	k: 934	n:110000
C20orf7   110000 perm   23 sec   (4765 perm/sec)   p_kst 8.490909e-03   p_cons 2.766364e-02   p_joint 1.309091e-03

Joint ci ratio: 4.020226e-01	ci left: 6.330580e-04	ci right 9.585176e-04	k: 94	n:120000
Cons ci ratio: 6.692927e-02	ci left: 2.686070e-02	ci right 2.872888e-02	k: 3334	n:120000
KS ci ratio: 1.212611e-01	ci left: 8.109549e-03	ci right 9.164403e-03	k: 1035	n:120000
C20orf7   120000 perm   26 sec   (4690 perm/sec)   p_kst 8.625000e-03   p_cons 2.778333e-02   p_joint 7.833333e-04

Joint ci ratio: 2.969743e-01	ci left: 1.139955e-03	ci right 1.544354e-03	k: 173	n:130000
Cons ci ratio: 6.414776e-02	ci left: 2.702661e-02	ci right 2.882530e-02	k: 3629	n:130000
KS ci ratio: 1.159494e-01	ci left: 8.209785e-03	ci right 9.227696e-03	k: 1132	n:130000
C20orf7   130000 perm   28 sec   (4615 perm/sec)   p_kst 8.707692e-03   p_cons 2.791538e-02   p_joint 1.330769e-03

Joint ci ratio: 2.880126e-01	ci left: 1.131337e-03	ci right 1.518363e-03	k: 184	n:140000
Cons ci ratio: 6.206164e-02	ci left: 2.684657e-02	ci right 2.857307e-02	k: 3878	n:140000
KS ci ratio: 1.122973e-01	ci left: 8.143779e-03	ci right 9.119593e-03	k: 1207	n:140000
C20orf7   140000 perm   31 sec   (4540 perm/sec)   p_kst 8.621429e-03   p_cons 2.770000e-02   p_joint 1.314286e-03

Joint ci ratio: 2.763092e-01	ci left: 1.155038e-03	ci right 1.531328e-03	k: 200	n:150000
Cons ci ratio: 6.021909e-02	ci left: 2.664538e-02	ci right 2.830629e-02	k: 4120	n:150000
KS ci ratio: 1.086287e-01	ci left: 8.138905e-03	ci right 9.080237e-03	k: 1290	n:150000
C20orf7   150000 perm   34 sec   (4468 perm/sec)   p_kst 8.600000e-03   p_cons 2.746667e-02   p_joint 1.333333e-03

Joint ci ratio: 2.671613e-01	ci left: 1.164390e-03	ci right 1.529065e-03	k: 214	n:160000
Cons ci ratio: 5.830507e-02	ci left: 2.667333e-02	ci right 2.828135e-02	k: 4395	n:160000
KS ci ratio: 1.052976e-01	ci left: 8.135095e-03	ci right 9.045346e-03	k: 1373	n:160000
C20orf7   160000 perm   36 sec   (4398 perm/sec)   p_kst 8.581250e-03   p_cons 2.746875e-02   p_joint 1.337500e-03

Joint ci ratio: 2.629206e-01	ci left: 1.134334e-03	ci right 1.483030e-03	k: 221	n:170000
Cons ci ratio: 5.665629e-02	ci left: 2.661171e-02	ci right 2.816917e-02	k: 4655	n:170000
KS ci ratio: 1.015893e-01	ci left: 8.241062e-03	ci right 9.128757e-03	k: 1475	n:170000
C20orf7   170000 perm   39 sec   (4331 perm/sec)   p_kst 8.676471e-03   p_cons 2.738235e-02   p_joint 1.300000e-03

Joint ci ratio: 2.539271e-01	ci left: 1.154450e-03	ci right 1.495270e-03	k: 237	n:180000
Cons ci ratio: 5.513990e-02	ci left: 2.655752e-02	ci right 2.806887e-02	k: 4915	n:180000
KS ci ratio: 9.897730e-02	ci left: 8.211100e-03	ci right 9.071504e-03	k: 1554	n:180000
C20orf7   180000 perm   42 sec   (4265 perm/sec)   p_kst 8.633333e-03   p_cons 2.730556e-02   p_joint 1.316667e-03

Joint ci ratio: 2.453145e-01	ci left: 1.177570e-03	ci right 1.511627e-03	k: 254	n:190000
Cons ci ratio: 5.374976e-02	ci left: 2.649914e-02	ci right 2.796796e-02	k: 5173	n:190000
KS ci ratio: 9.587859e-02	ci left: 8.302717e-03	ci right 9.143954e-03	k: 1656	n:190000
C20orf7   190000 perm   45 sec   (4202 perm/sec)   p_kst 8.715789e-03   p_cons 2.722632e-02   p_joint 1.336842e-03

Joint ci ratio: 2.406435e-01	ci left: 1.165646e-03	ci right 1.489085e-03	k: 264	n:200000
Cons ci ratio: 5.243491e-02	ci left: 2.647171e-02	ci right 2.790204e-02	k: 5436	n:200000
KS ci ratio: 9.359203e-02	ci left: 8.287864e-03	ci right 9.106471e-03	k: 1738	n:200000
C20orf7   200000 perm   48 sec   (4135 perm/sec)   p_kst 8.690000e-03   p_cons 2.718000e-02   p_joint 1.320000e-03

Joint ci ratio: 2.316360e-01	ci left: 1.204228e-03	ci right 1.524076e-03	k: 285	n:210000
Cons ci ratio: 5.109240e-02	ci left: 2.656957e-02	ci right 2.796733e-02	k: 5725	n:210000
KS ci ratio: 9.066147e-02	ci left: 8.423581e-03	ci right 9.228160e-03	k: 1852	n:210000
C20orf7   210000 perm   52 sec   (4076 perm/sec)   p_kst 8.819048e-03   p_cons 2.726190e-02   p_joint 1.357143e-03

Joint ci ratio: 2.273074e-01	ci left: 1.196616e-03	ci right 1.507670e-03	k: 296	n:220000
Cons ci ratio: 5.005801e-02	ci left: 2.643892e-02	ci right 2.780085e-02	k: 5965	n:220000
KS ci ratio: 8.879043e-02	ci left: 8.391718e-03	ci right 9.175852e-03	k: 1931	n:220000
C20orf7   220000 perm   55 sec   (4017 perm/sec)   p_kst 8.777273e-03   p_cons 2.711364e-02   p_joint 1.345455e-03

Joint ci ratio: 1.187254e-01	ci left: 4.437222e-03	ci right 5.001458e-03	k: 1084	n:230000
Cons ci ratio: 4.895843e-02	ci left: 2.645308e-02	ci right 2.778496e-02	k: 6236	n:230000
KS ci ratio: 8.655428e-02	ci left: 8.456375e-03	ci right 9.225644e-03	k: 2032	n:230000
C20orf7   230000 perm   58 sec   (3956 perm/sec)   p_kst 8.834783e-03   p_cons 2.711304e-02   p_joint 4.713043e-03

Joint ci ratio: 2.189881e-01	ci left: 1.187375e-03	ci right 1.483212e-03	k: 319	n:240000
Cons ci ratio: 4.787537e-02	ci left: 2.652402e-02	ci right 2.782910e-02	k: 6521	n:240000
KS ci ratio: 8.445899e-02	ci left: 8.519950e-03	ci right 9.275315e-03	k: 2134	n:240000
C20orf7   240000 perm   62 sec   (3901 perm/sec)   p_kst 8.891667e-03   p_cons 2.717083e-02   p_joint 1.329167e-03

Joint ci ratio: 2.149946e-01	ci left: 1.185272e-03	ci right 1.474488e-03	k: 331	n:250000
Cons ci ratio: 4.696409e-02	ci left: 2.647490e-02	ci right 2.775210e-02	k: 6777	n:250000
KS ci ratio: 8.273303e-02	ci left: 8.531628e-03	ci right 9.271825e-03	k: 2224	n:250000
C20orf7   250000 perm   65 sec   (3845 perm/sec)   p_kst 8.896000e-03   p_cons 2.710800e-02   p_joint 1.324000e-03

Joint ci ratio: 2.109052e-01	ci left: 1.187018e-03	ci right 1.470439e-03	k: 344	n:260000
Cons ci ratio: 4.609283e-02	ci left: 2.644118e-02	ci right 2.769246e-02	k: 7036	n:260000
KS ci ratio: 8.109107e-02	ci left: 8.546322e-03	ci right 9.272381e-03	k: 2315	n:260000
C20orf7   260000 perm   69 sec   (3794 perm/sec)   p_kst 8.903846e-03   p_cons 2.706154e-02   p_joint 1.323077e-03

Joint ci ratio: 2.067517e-01	ci left: 1.192195e-03	ci right 1.470538e-03	k: 358	n:270000
Cons ci ratio: 4.526513e-02	ci left: 2.641384e-02	ci right 2.764079e-02	k: 7296	n:270000
KS ci ratio: 7.939351e-02	ci left: 8.592738e-03	ci right 9.306752e-03	k: 2415	n:270000
C20orf7   270000 perm   72 sec   (3743 perm/sec)   p_kst 8.944444e-03   p_cons 2.702222e-02   p_joint 1.325926e-03

Joint ci ratio: 2.017540e-01	ci left: 1.210616e-03	ci right 1.485586e-03	k: 376	n:280000
Cons ci ratio: 4.441408e-02	ci left: 2.646635e-02	ci right 2.767204e-02	k: 7578	n:280000
KS ci ratio: 7.781388e-02	ci left: 8.632482e-03	ci right 9.334880e-03	k: 2514	n:280000
C20orf7   280000 perm   76 sec   (3693 perm/sec)   p_kst 8.978571e-03   p_cons 2.706429e-02   p_joint 1.342857e-03

Joint ci ratio: 1.981089e-01	ci left: 1.214730e-03	ci right 1.485048e-03	k: 390	n:290000
Cons ci ratio: 4.353818e-02	ci left: 2.660074e-02	ci right 2.778805e-02	k: 7885	n:290000
KS ci ratio: 7.656171e-02	ci left: 8.615490e-03	ci right 9.304722e-03	k: 2597	n:290000
C20orf7   290000 perm   80 sec   (3645 perm/sec)   p_kst 8.955172e-03   p_cons 2.718966e-02   p_joint 1.344828e-03

Joint ci ratio: 1.968570e-01	ci left: 1.190080e-03	ci right 1.453038e-03	k: 395	n:300000
Cons ci ratio: 4.287650e-02	ci left: 2.652516e-02	ci right 2.769066e-02	k: 8131	n:300000
KS ci ratio: 7.542491e-02	ci left: 8.586631e-03	ci right 9.262907e-03	k: 2676	n:300000
C20orf7   300000 perm   83 sec   (3598 perm/sec)   p_kst 8.920000e-03   p_cons 2.710333e-02   p_joint 1.316667e-03

Joint ci ratio: 1.934666e-01	ci left: 1.194646e-03	ci right 1.453531e-03	k: 409	n:310000
Cons ci ratio: 4.214080e-02	ci left: 2.658230e-02	ci right 2.772979e-02	k: 8417	n:310000
KS ci ratio: 7.409353e-02	ci left: 8.616701e-03	ci right 9.282850e-03	k: 2773	n:310000
C20orf7   310000 perm   87 sec   (3552 perm/sec)   p_kst 8.945161e-03   p_cons 2.715161e-02   p_joint 1.319355e-03

Joint ci ratio: 1.916079e-01	ci left: 1.181107e-03	ci right 1.434313e-03	k: 417	n:320000
Cons ci ratio: 4.143683e-02	ci left: 2.664222e-02	ci right 2.777262e-02	k: 8705	n:320000
KS ci ratio: 7.303588e-02	ci left: 8.595894e-03	ci right 9.250546e-03	k: 2854	n:320000
C20orf7   320000 perm   91 sec   (3506 perm/sec)   p_kst 8.918750e-03   p_cons 2.720313e-02   p_joint 1.303125e-03

Joint ci ratio: 1.882593e-01	ci left: 1.188610e-03	ci right 1.438461e-03	k: 432	n:330000
Cons ci ratio: 4.081366e-02	ci left: 2.663865e-02	ci right 2.775150e-02	k: 8973	n:330000
KS ci ratio: 7.175152e-02	ci left: 8.641891e-03	ci right 9.287989e-03	k: 2957	n:330000
C20orf7   330000 perm   95 sec   (3462 perm/sec)   p_kst 8.960606e-03   p_cons 2.719091e-02   p_joint 1.309091e-03

Joint ci ratio: 8.856115e-02	ci left: 5.475587e-03	ci right 5.985833e-03	k: 1947	n:340000
Cons ci ratio: 4.026484e-02	ci left: 2.657424e-02	ci right 2.766913e-02	k: 9220	n:340000
KS ci ratio: 7.076627e-02	ci left: 8.627483e-03	ci right 9.263282e-03	k: 3040	n:340000
C20orf7   340000 perm   99 sec   (3419 perm/sec)   p_kst 8.941176e-03   p_cons 2.711765e-02   p_joint 5.726471e-03

Outputting figure to mutsig2_images.part000000000024/C20orf7.2_1102_340000_0.0089412_0.027118_0.0057265.png
                gene_name: C20orf7
               theta_stop: 0.089 
                    nperm: 340000 
                     p_ks: 0.0089 
        ci_ks_bounds_left: 0.0086 
       ci_ks_bounds_right: 0.0093 
                   p_cons: 0.027 
      ci_cons_bounds_left: 0.027 
     ci_cons_bounds_right: 0.028 
                  p_joint: 0.0057 
     ci_joint_bounds_left: 0.0055 
    ci_joint_bounds_right: 0.0060 

Current progress: 66 percent done.
C20orf70
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.989796e-02	ci left: 4.812555e-01	ci right 5.009497e-01	k: 4911	n:10000
Cons ci ratio: 4.909800e-02	ci left: 3.796273e-01	ci right 3.988373e-01	k: 3892	n:10000
KS ci ratio: 1.999794e-02	ci left: 7.854313e-01	ci right 8.013975e-01	k: 7935	n:10000
C20orf70   10000 perm   1 sec   (6742 perm/sec)   p_kst 7.935000e-01   p_cons 3.892000e-01   p_joint 4.911000e-01

Outputting figure to mutsig2_images.part000000000024/C20orf70.2_778_10000_0.7935_0.3892_0.4911.png
                gene_name: C20orf70
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 69 percent done.
C20orf79
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.370625e-02	ci left: 7.234042e-01	ci right 7.408604e-01	k: 7322	n:10000
Cons ci ratio: 1.263474e-01	ci left: 8.222674e-02	ci right 9.341473e-02	k: 877	n:10000
KS ci ratio: 3.044806e-03	ci left: 9.923959e-01	ci right 9.955057e-01	k: 9941	n:10000
C20orf79   10000 perm   1 sec   (6880 perm/sec)   p_kst 9.941000e-01   p_cons 8.770000e-02   p_joint 7.322000e-01

Joint ci ratio: 1.837482e-02	ci left: 6.882645e-01	ci right 7.010789e-01	k: 13894	n:20000
Cons ci ratio: 8.859824e-02	ci left: 8.518666e-02	ci right 9.313326e-02	k: 1782	n:20000
KS ci ratio: 2.070483e-03	ci left: 9.933748e-01	ci right 9.954776e-01	k: 19890	n:20000
C20orf79   20000 perm   3 sec   (6076 perm/sec)   p_kst 9.945000e-01   p_cons 8.910000e-02   p_joint 6.947000e-01

Outputting figure to mutsig2_images.part000000000024/C20orf79.2_475_20000_0.9945_0.0891_0.6947.png
                gene_name: C20orf79
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 1.00 
                   p_cons: 0.089 
      ci_cons_bounds_left: 0.085 
     ci_cons_bounds_right: 0.093 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.70 

Current progress: 72 percent done.
C20orf96
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.621153e-02	ci left: 5.296705e-01	ci right 5.493065e-01	k: 5395	n:10000
Cons ci ratio: 4.318138e-02	ci left: 4.419113e-01	ci right 4.615169e-01	k: 4517	n:10000
KS ci ratio: 6.969831e-02	ci left: 2.318535e-01	ci right 2.486980e-01	k: 2402	n:10000
C20orf96   10000 perm   1 sec   (6830 perm/sec)   p_kst 2.402000e-01   p_cons 4.517000e-01   p_joint 5.395000e-01

Outputting figure to mutsig2_images.part000000000024/C20orf96.2_1136_10000_0.2402_0.4517_0.5395.png
                gene_name: C20orf96
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 76 percent done.
C22orf28
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.295412e-02	ci left: 8.955947e-01	ci right 9.073703e-01	k: 9016	n:10000
KS ci ratio: 1.915270e-02	ci left: 7.994305e-01	ci right 8.149901e-01	k: 8073	n:10000
C22orf28   10000 perm   2 sec   (6470 perm/sec)   p_kst 8.073000e-01   p_cons 9.016000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000024/C22orf28.2_1566_10000_0.8073_0.9016_1.png
                gene_name: C22orf28
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
C2orf24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.531015e-02	ci left: 5.421894e-01	ci right 5.617803e-01	k: 5520	n:10000
KS ci ratio: 1.514227e-02	ci left: 8.634550e-01	ci right 8.767286e-01	k: 8702	n:10000
C2orf24   10000 perm   1 sec   (6719 perm/sec)   p_kst 8.702000e-01   p_cons 5.520000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000024/C2orf24.2_1265_10000_0.8702_0.552_1.png
                gene_name: C2orf24
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
C2orf29
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.032931e-03	ci left: 9.653082e-01	ci right 9.722151e-01	k: 9689	n:10000
KS ci ratio: 3.913930e-02	ci left: 4.908512e-01	ci right 5.105484e-01	k: 5007	n:10000
C2orf29   10000 perm   2 sec   (6549 perm/sec)   p_kst 5.007000e-01   p_cons 9.689000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000024/C2orf29.2_1561_10000_0.5007_0.9689_1.png
                gene_name: C2orf29
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
C2orf40
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.075725e-03	ci left: 9.871939e-01	ci right 9.913137e-01	k: 9894	n:10000
Cons ci ratio: 6.724503e-03	ci left: 9.680482e-01	ci right 9.746734e-01	k: 9715	n:10000
KS ci ratio: 3.738618e-02	ci left: 5.137554e-01	ci right 5.334308e-01	k: 5236	n:10000
C2orf40   10000 perm   1 sec   (7041 perm/sec)   p_kst 5.236000e-01   p_cons 9.715000e-01   p_joint 9.894000e-01

Outputting figure to mutsig2_images.part000000000024/C2orf40.2_463_10000_0.5236_0.9715_0.9894.png
                gene_name: C2orf40
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 90 percent done.
C2orf55
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.232741e-01	ci left: 2.655489e-02	ci right 3.332262e-02	k: 298	n:10000
Cons ci ratio: 9.327507e-02	ci left: 1.430542e-01	ci right 1.571503e-01	k: 1500	n:10000
KS ci ratio: 1.257984e-01	ci left: 8.290659e-02	ci right 9.413446e-02	k: 884	n:10000
C2orf55   10000 perm   2 sec   (5977 perm/sec)   p_kst 8.840000e-02   p_cons 1.500000e-01   p_joint 2.980000e-02

Joint ci ratio: 1.696499e-01	ci left: 2.379073e-02	ci right 2.824852e-02	k: 519	n:20000
Cons ci ratio: 6.719905e-02	ci left: 1.404921e-01	ci right 1.503112e-01	k: 2907	n:20000
KS ci ratio: 9.067967e-02	ci left: 8.156220e-02	ci right 8.935881e-02	k: 1708	n:20000
C2orf55   20000 perm   4 sec   (5332 perm/sec)   p_kst 8.540000e-02   p_cons 1.453500e-01   p_joint 2.595000e-02

Joint ci ratio: 1.406636e-01	ci left: 2.345587e-02	ci right 2.703688e-02	k: 756	n:30000
Cons ci ratio: 5.564664e-02	ci left: 1.379695e-01	ci right 1.459000e-01	k: 4257	n:30000
KS ci ratio: 7.450989e-02	ci left: 8.131079e-02	ci right 8.763662e-02	k: 2533	n:30000
C2orf55   30000 perm   6 sec   (5093 perm/sec)   p_kst 8.443333e-02   p_cons 1.419000e-01   p_joint 2.520000e-02

Joint ci ratio: 1.242610e-01	ci left: 2.276466e-02	ci right 2.580494e-02	k: 970	n:40000
Cons ci ratio: 4.833716e-02	ci left: 1.377763e-01	ci right 1.446259e-01	k: 5647	n:40000
KS ci ratio: 6.424425e-02	ci left: 8.240787e-02	ci right 8.790253e-02	k: 3405	n:40000
C2orf55   40000 perm   8 sec   (4927 perm/sec)   p_kst 8.512500e-02   p_cons 1.411750e-01   p_joint 2.425000e-02

Joint ci ratio: 1.130547e-01	ci left: 2.215102e-02	ci right 2.482470e-02	k: 1173	n:50000
Cons ci ratio: 4.330917e-02	ci left: 1.377226e-01	ci right 1.438392e-01	k: 7038	n:50000
KS ci ratio: 5.737726e-02	ci left: 8.292497e-02	ci right 8.784329e-02	k: 4268	n:50000
C2orf55   50000 perm   10 sec   (4799 perm/sec)   p_kst 8.536000e-02   p_cons 1.407600e-01   p_joint 2.346000e-02

Joint ci ratio: 1.025651e-01	ci left: 2.254636e-02	ci right 2.500000e-02	k: 1425	n:60000
Cons ci ratio: 3.937798e-02	ci left: 1.389516e-01	ci right 1.445497e-01	k: 8504	n:60000
KS ci ratio: 5.237140e-02	ci left: 8.315906e-02	ci right 8.764781e-02	k: 5123	n:60000
C2orf55   60000 perm   13 sec   (4668 perm/sec)   p_kst 8.538333e-02   p_cons 1.417333e-01   p_joint 2.375000e-02

Joint ci ratio: 9.315634e-02	ci left: 2.352092e-02	ci right 2.583299e-02	k: 1726	n:70000
Cons ci ratio: 3.650304e-02	ci left: 1.388549e-01	ci right 1.440320e-01	k: 9900	n:70000
KS ci ratio: 4.837602e-02	ci left: 8.367880e-02	ci right 8.784132e-02	k: 6002	n:70000
C2orf55   70000 perm   15 sec   (4564 perm/sec)   p_kst 8.574286e-02   p_cons 1.414286e-01   p_joint 2.465714e-02

Outputting figure to mutsig2_images.part000000000024/C2orf55.2_2925_70000_0.085743_0.14143_0.024657.png
                gene_name: C2orf55
               theta_stop: 0.093 
                    nperm: 70000 
                     p_ks: 0.086 
        ci_ks_bounds_left: 0.084 
       ci_ks_bounds_right: 0.088 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.025 
     ci_joint_bounds_left: 0.024 
    ci_joint_bounds_right: 0.026 

Current progress: 93 percent done.
C2orf56
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.855977e-02	ci left: 8.091780e-01	ci right 8.244370e-01	k: 8169	n:10000
KS ci ratio: 5.739775e-03	ci left: 9.761027e-01	ci right 9.818135e-01	k: 9791	n:10000
C2orf56   10000 perm   2 sec   (6435 perm/sec)   p_kst 9.791000e-01   p_cons 8.169000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000024/C2orf56.2_1366_10000_0.9791_0.8169_1.png
                gene_name: C2orf56
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
C2orf7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.033792e-01	ci left: 1.191644e-01	ci right 1.322545e-01	k: 1256	n:10000
KS ci ratio: 3.776252e-02	ci left: 5.087527e-01	ci right 5.284364e-01	k: 5186	n:10000
C2orf7   10000 perm   1 sec   (7144 perm/sec)   p_kst 5.186000e-01   p_cons 1.256000e-01   p_joint 1

Joint ci ratio: 4.547915e-02	ci left: 2.646501e-01	ci right 2.770166e-01	k: 5416	n:20000
Cons ci ratio: 7.320138e-02	ci left: 1.207908e-01	ci right 1.300185e-01	k: 2507	n:20000
KS ci ratio: 2.676828e-02	ci left: 5.104476e-01	ci right 5.243474e-01	k: 10348	n:20000
C2orf7   20000 perm   3 sec   (6282 perm/sec)   p_kst 5.174000e-01   p_cons 1.253500e-01   p_joint 2.708000e-01

Outputting figure to mutsig2_images.part000000000024/C2orf7.2_587_20000_0.5174_0.12535_0.2708.png
                gene_name: C2orf7
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000024
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 24 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1643>
Subject: Job 8003915: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1643>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000025> was used as the working directory.
Started at Sun Nov 11 15:04:14 2012
Results reported at Sun Nov 11 15:11:52 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000025.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000025.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 25  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000025.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    488.05 sec.
    Max Memory :      4788 MB
    Max Swap   :      7049 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
25
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 25
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 25: processing genes 2172 - 2262
Calculating significance of each gene.
Using projection method.
2172	C2orf80	4.142370e-01
2173	C2orf83	4.539487e-01
2174	C2orf84	2.742509e-01
2175	C2orf85	8.145406e-01
2176	C2orf86	1
2177	C2orf88	1
2178	C2orf89	5.571564e-01
2179	C3	9.303524e-01
2180	C3AR1	5.236453e-01
2181	C3orf1	4.199171e-01
2182	C3orf10	1
2183	C3orf14	1
2184	C3orf15	1.224249e-01
2185	C3orf17	5.407552e-01
2186	C3orf18	1
2187	C3orf19	4.064511e-01
2188	C3orf20	7.284376e-01
2189	C3orf21	1
2190	C3orf22	1
2191	C3orf23	6.658705e-01
2192	C3orf24	1
2193	C3orf26	1
2194	C3orf27	1.471617e-01
2195	C3orf30	9.855691e-03
2196	C3orf31	1
2197	C3orf32	7.042131e-01
2198	C3orf33	1.959965e-02
2199	C3orf34	2.180891e-01
2200	C3orf35	1
2201	C3orf36	4.693326e-01
2202	C3orf37	3.282047e-01
2203	C3orf38	2.069013e-01
2204	C3orf39	8.635852e-01
2205	C3orf43	5.578356e-01
2206	C3orf45	1
2207	C3orf52	1
2208	C3orf54	1
2209	C3orf55	1
2210	C3orf57	1
2211	C3orf58	1
2212	C3orf59	4.813757e-04
2213	C3orf62	4.469893e-01
2214	C3orf63	8.202659e-01
2215	C3orf64	4.981247e-01
2216	C3orf67	1
2217	C3orf70	8.488513e-02
2218	C3orf71	6.593759e-01
2219	C3orf72	2.436915e-01
2220	C3orf75	1
2221	C3orf79	1
2222	C4BPA	7.420787e-01
2223	C4BPB	1
2224	C4orf14	8.513008e-01
2225	C4orf17	7.899139e-01
2226	C4orf19	3.217622e-01
2227	C4orf21	9.924659e-01
2228	C4orf22	1
2229	C4orf23	1
2230	C4orf26	1
2231	C4orf27	1
2232	C4orf29	5.365257e-01
2233	C4orf3	1
2234	C4orf31	8.271621e-01
2235	C4orf32	1
2236	C4orf33	1
2237	C4orf34	1
2238	C4orf35	1
2239	C4orf36	1
2240	C4orf37	4.952481e-01
2241	C4orf39	1
2242	C4orf40	1
2243	C4orf41	9.052541e-01
2244	C4orf43	1
2245	C4orf44	1
2246	C4orf45	3.039229e-01
2247	C4orf46	4.304941e-02
2248	C4orf49	6.896756e-01
2249	C4orf50	6.213910e-01
2250	C4orf51	1.294380e-01
2251	C4orf6	1
2252	C4orf7	2.270916e-01
2253	C5	9.956463e-01
2254	C5AR1	2.239545e-01
2255	C5orf13	1
2256	C5orf15	1
2257	C5orf20	3.664924e-01
2258	C5orf22	1
2259	C5orf23	4.200468e-01
2260	C5orf24	1
2261	C5orf25	7.783897e-01
2262	C5orf28	1
Done

Running MutSig 2:
Scatter job 25: processing genes 2172 - 2262
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
C4orf21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.006293e-02	ci left: 2.299769e-01	ci right 2.467758e-01	k: 2383	n:10000
Cons ci ratio: 1.759120e-02	ci left: 8.249328e-01	ci right 8.396731e-01	k: 8324	n:10000
KS ci ratio: 1.025873e-01	ci left: 1.208265e-01	ci right 1.339914e-01	k: 1273	n:10000
C4orf21   10000 perm   3 sec   (3839 perm/sec)   p_kst 1.273000e-01   p_cons 8.324000e-01   p_joint 2.383000e-01

Joint ci ratio: 4.748411e-02	ci left: 2.480775e-01	ci right 2.601941e-01	k: 5082	n:20000
Cons ci ratio: 1.242047e-02	ci left: 8.275552e-01	ci right 8.379479e-01	k: 16656	n:20000
KS ci ratio: 7.221701e-02	ci left: 1.237437e-01	ci right 1.330646e-01	k: 2567	n:20000
C4orf21   20000 perm   8 sec   (2637 perm/sec)   p_kst 1.283500e-01   p_cons 8.328000e-01   p_joint 2.541000e-01

Outputting figure to mutsig2_images.part000000000025/C4orf21.11_6423_20000_0.12835_0.8328_0.2541.png
                gene_name: C4orf21
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 4 percent done.
C3orf59
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.689629e-02	ci left: 2.469740e-01	ci right 2.641687e-01	k: 2555	n:10000
Cons ci ratio: 3.363528e-02	ci left: 5.661428e-01	ci right 5.856130e-01	k: 5759	n:10000
KS ci ratio: 9.262256e-02	ci left: 1.448193e-01	ci right 1.589842e-01	k: 1518	n:10000
C3orf59   10000 perm   2 sec   (5621 perm/sec)   p_kst 1.518000e-01   p_cons 5.759000e-01   p_joint 2.555000e-01

Outputting figure to mutsig2_images.part000000000025/C3orf59.9_1484_10000_0.1518_0.5759_0.2555.png
                gene_name: C3orf59
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 7 percent done.
C2orf86
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.823649e-01	ci left: 8.414755e-03	ci right 1.247803e-02	k: 103	n:10000
Cons ci ratio: 9.653018e-03	ci left: 9.381717e-01	ci right 9.473683e-01	k: 9429	n:10000
KS ci ratio: 6.432188e-01	ci left: 2.522631e-03	ci right 4.980467e-03	k: 36	n:10000
C2orf86   10000 perm   2 sec   (4990 perm/sec)   p_kst 3.600000e-03   p_cons 9.429000e-01   p_joint 1.030000e-02

Joint ci ratio: 2.249930e-01	ci left: 1.326674e-02	ci right 1.667640e-02	k: 298	n:20000
Cons ci ratio: 6.848713e-03	ci left: 9.391838e-01	ci right 9.456868e-01	k: 18850	n:20000
KS ci ratio: 4.267974e-01	ci left: 3.306767e-03	ci right 5.141989e-03	k: 83	n:20000
C2orf86   20000 perm   4 sec   (4525 perm/sec)   p_kst 4.150000e-03   p_cons 9.425000e-01   p_joint 1.490000e-02

Joint ci ratio: 2.186510e-01	ci left: 9.440543e-03	ci right 1.178901e-02	k: 317	n:30000
Cons ci ratio: 5.584452e-03	ci left: 9.399421e-01	ci right 9.452384e-01	k: 28279	n:30000
KS ci ratio: 3.471010e-01	ci left: 3.499882e-03	ci right 4.998632e-03	k: 126	n:30000
C2orf86   30000 perm   7 sec   (4347 perm/sec)   p_kst 4.200000e-03   p_cons 9.426333e-01   p_joint 1.056667e-02

Joint ci ratio: 2.033995e-01	ci left: 8.263895e-03	ci right 1.015838e-02	k: 367	n:40000
Cons ci ratio: 4.844197e-03	ci left: 9.401229e-01	ci right 9.447126e-01	k: 37698	n:40000
KS ci ratio: 3.054686e-01	ci left: 3.474429e-03	ci right 4.749221e-03	k: 163	n:40000
C2orf86   40000 perm   9 sec   (4234 perm/sec)   p_kst 4.075000e-03   p_cons 9.424500e-01   p_joint 9.175000e-03

Joint ci ratio: 1.407316e-01	ci left: 1.420373e-02	ci right 1.637308e-02	k: 763	n:50000
Cons ci ratio: 4.212766e-03	ci left: 9.433929e-01	ci right 9.473952e-01	k: 47271	n:50000
KS ci ratio: 2.745683e-01	ci left: 3.502960e-03	ci right 4.635813e-03	k: 202	n:50000
C2orf86   50000 perm   12 sec   (4143 perm/sec)   p_kst 4.040000e-03   p_cons 9.454200e-01   p_joint 1.526000e-02

Joint ci ratio: 1.483701e-01	ci left: 1.064618e-02	ci right 1.236822e-02	k: 689	n:60000
Cons ci ratio: 3.848228e-03	ci left: 9.435013e-01	ci right 9.471555e-01	k: 56721	n:60000
KS ci ratio: 2.489076e-01	ci left: 3.604482e-03	ci right 4.644385e-03	k: 246	n:60000
C2orf86   60000 perm   15 sec   (4061 perm/sec)   p_kst 4.100000e-03   p_cons 9.453500e-01   p_joint 1.148333e-02

Joint ci ratio: 1.484935e-01	ci left: 9.124760e-03	ci right 1.060201e-02	k: 689	n:70000
Cons ci ratio: 3.548155e-03	ci left: 9.440681e-01	ci right 9.474377e-01	k: 66204	n:70000
KS ci ratio: 2.317259e-01	ci left: 3.599760e-03	ci right 4.556355e-03	k: 284	n:70000
C2orf86   70000 perm   18 sec   (3983 perm/sec)   p_kst 4.057143e-03   p_cons 9.457714e-01   p_joint 9.842857e-03

Joint ci ratio: 1.431406e-01	ci left: 8.622335e-03	ci right 9.963613e-03	k: 742	n:80000
Cons ci ratio: 3.336190e-03	ci left: 9.436385e-01	ci right 9.468042e-01	k: 75619	n:80000
KS ci ratio: 2.176725e-01	ci left: 3.598075e-03	ci right 4.488484e-03	k: 322	n:80000
C2orf86   80000 perm   21 sec   (3866 perm/sec)   p_kst 4.025000e-03   p_cons 9.452375e-01   p_joint 9.275000e-03

Joint ci ratio: 1.119314e-01	ci left: 1.269138e-02	ci right 1.420689e-02	k: 1209	n:90000
Cons ci ratio: 3.144473e-03	ci left: 9.437607e-01	ci right 9.467439e-01	k: 85074	n:90000
KS ci ratio: 2.042036e-01	ci left: 3.661386e-03	ci right 4.504405e-03	k: 366	n:90000
C2orf86   90000 perm   24 sec   (3793 perm/sec)   p_kst 4.066667e-03   p_cons 9.452667e-01   p_joint 1.343333e-02

Joint ci ratio: 1.102680e-01	ci left: 1.179138e-02	ci right 1.317711e-02	k: 1247	n:100000
Cons ci ratio: 2.987023e-03	ci left: 9.437006e-01	ci right 9.465335e-01	k: 94513	n:100000
KS ci ratio: 1.943906e-01	ci left: 3.656293e-03	ci right 4.452897e-03	k: 404	n:100000
C2orf86   100000 perm   27 sec   (3713 perm/sec)   p_kst 4.040000e-03   p_cons 9.451300e-01   p_joint 1.247000e-02

Joint ci ratio: 1.097987e-01	ci left: 1.082522e-02	ci right 1.209164e-02	k: 1259	n:110000
Cons ci ratio: 2.838324e-03	ci left: 9.441238e-01	ci right 9.468163e-01	k: 104003	n:110000
KS ci ratio: 1.858686e-01	ci left: 3.652919e-03	ci right 4.409963e-03	k: 442	n:110000
C2orf86   110000 perm   30 sec   (3640 perm/sec)   p_kst 4.018182e-03   p_cons 9.454818e-01   p_joint 1.144545e-02

Joint ci ratio: 1.082566e-01	ci left: 1.022287e-02	ci right 1.140095e-02	k: 1296	n:120000
Cons ci ratio: 2.713698e-03	ci left: 9.443271e-01	ci right 9.469014e-01	k: 113475	n:120000
KS ci ratio: 1.791266e-01	ci left: 3.618895e-03	ci right 4.338735e-03	k: 476	n:120000
C2orf86   120000 perm   34 sec   (3553 perm/sec)   p_kst 3.966667e-03   p_cons 9.456250e-01   p_joint 1.080000e-02

Joint ci ratio: 9.852303e-02	ci left: 1.143768e-02	ci right 1.263039e-02	k: 1563	n:130000
Cons ci ratio: 2.606299e-03	ci left: 9.444155e-01	ci right 9.468877e-01	k: 122936	n:130000
KS ci ratio: 1.715586e-01	ci left: 3.656782e-03	ci right 4.350246e-03	k: 519	n:130000
C2orf86   130000 perm   37 sec   (3512 perm/sec)   p_kst 3.992308e-03   p_cons 9.456615e-01   p_joint 1.202308e-02

Joint ci ratio: 8.972613e-02	ci left: 1.284614e-02	ci right 1.405985e-02	k: 1882	n:140000
Cons ci ratio: 2.512288e-03	ci left: 9.444280e-01	ci right 9.468107e-01	k: 132388	n:140000
KS ci ratio: 1.644359e-01	ci left: 3.710352e-03	ci right 4.381874e-03	k: 565	n:140000
C2orf86   140000 perm   41 sec   (3447 perm/sec)   p_kst 4.035714e-03   p_cons 9.456286e-01   p_joint 1.344286e-02

Joint ci ratio: 8.865310e-02	ci left: 1.229592e-02	ci right 1.344303e-02	k: 1929	n:150000
Cons ci ratio: 2.422098e-03	ci left: 9.446826e-01	ci right 9.469801e-01	k: 141876	n:150000
KS ci ratio: 1.582624e-01	ci left: 3.750891e-03	ci right 4.401842e-03	k: 610	n:150000
C2orf86   150000 perm   45 sec   (3364 perm/sec)   p_kst 4.066667e-03   p_cons 9.458400e-01   p_joint 1.286000e-02

Joint ci ratio: 8.532859e-02	ci left: 1.246292e-02	ci right 1.357983e-02	k: 2082	n:160000
Cons ci ratio: 2.345523e-03	ci left: 9.447046e-01	ci right 9.469292e-01	k: 151332	n:160000
KS ci ratio: 1.541580e-01	ci left: 3.714643e-03	ci right 4.341039e-03	k: 643	n:160000
C2orf86   160000 perm   48 sec   (3308 perm/sec)   p_kst 4.018750e-03   p_cons 9.458250e-01   p_joint 1.301250e-02

Joint ci ratio: 7.850927e-02	ci left: 1.388519e-02	ci right 1.502558e-02	k: 2456	n:170000
Cons ci ratio: 2.271859e-03	ci left: 9.449032e-01	ci right 9.470581e-01	k: 160818	n:170000
KS ci ratio: 1.500237e-01	ci left: 3.699839e-03	ci right 4.305504e-03	k: 679	n:170000
C2orf86   170000 perm   53 sec   (3219 perm/sec)   p_kst 3.994118e-03   p_cons 9.459882e-01   p_joint 1.444706e-02

Joint ci ratio: 7.310558e-02	ci left: 1.514712e-02	ci right 1.630189e-02	k: 2829	n:180000
Cons ci ratio: 2.207951e-03	ci left: 9.449291e-01	ci right 9.470232e-01	k: 170277	n:180000
KS ci ratio: 1.455940e-01	ci left: 3.719000e-03	ci right 4.308263e-03	k: 721	n:180000
C2orf86   180000 perm   56 sec   (3187 perm/sec)   p_kst 4.005556e-03   p_cons 9.459833e-01   p_joint 1.571667e-02

Joint ci ratio: 8.453954e-02	ci left: 1.071619e-02	ci right 1.166723e-02	k: 2125	n:190000
Cons ci ratio: 2.148707e-03	ci left: 9.449743e-01	ci right 9.470121e-01	k: 179740	n:190000
KS ci ratio: 1.446076e-01	ci left: 3.573964e-03	ci right 4.136077e-03	k: 731	n:190000
C2orf86   190000 perm   60 sec   (3158 perm/sec)   p_kst 3.847368e-03   p_cons 9.460000e-01   p_joint 1.118421e-02

Joint ci ratio: 8.392735e-02	ci left: 1.033692e-02	ci right 1.124734e-02	k: 2157	n:200000
Cons ci ratio: 2.088859e-03	ci left: 9.452678e-01	ci right 9.472493e-01	k: 189253	n:200000
KS ci ratio: 1.409944e-01	ci left: 3.578478e-03	ci right 4.126057e-03	k: 769	n:200000
C2orf86   200000 perm   64 sec   (3128 perm/sec)   p_kst 3.845000e-03   p_cons 9.462650e-01   p_joint 1.078500e-02

Joint ci ratio: 7.876498e-02	ci left: 1.119776e-02	ci right 1.212055e-02	k: 2447	n:210000
Cons ci ratio: 2.037717e-03	ci left: 9.453321e-01	ci right 9.472651e-01	k: 198724	n:210000
KS ci ratio: 1.375538e-01	ci left: 3.587319e-03	ci right 4.121758e-03	k: 808	n:210000
C2orf86   210000 perm   68 sec   (3098 perm/sec)   p_kst 3.847619e-03   p_cons 9.463048e-01   p_joint 1.165238e-02

Joint ci ratio: 7.870486e-02	ci left: 1.071095e-02	ci right 1.159291e-02	k: 2452	n:220000
Cons ci ratio: 1.993360e-03	ci left: 9.452261e-01	ci right 9.471166e-01	k: 208159	n:220000
KS ci ratio: 1.336433e-01	ci left: 3.635046e-03	ci right 4.159976e-03	k: 856	n:220000
C2orf86   220000 perm   72 sec   (3069 perm/sec)   p_kst 3.890909e-03   p_cons 9.461773e-01   p_joint 1.114545e-02

Joint ci ratio: 7.696729e-02	ci left: 1.072273e-02	ci right 1.158530e-02	k: 2564	n:230000
Cons ci ratio: 1.948440e-03	ci left: 9.453052e-01	ci right 9.471531e-01	k: 217634	n:230000
KS ci ratio: 1.307757e-01	ci left: 3.636754e-03	ci right 4.149786e-03	k: 894	n:230000
C2orf86   230000 perm   76 sec   (3035 perm/sec)   p_kst 3.886957e-03   p_cons 9.462348e-01   p_joint 1.114783e-02

Joint ci ratio: 7.684921e-02	ci left: 1.031265e-02	ci right 1.114090e-02	k: 2573	n:240000
Cons ci ratio: 1.905800e-03	ci left: 9.454116e-01	ci right 9.472192e-01	k: 227117	n:240000
KS ci ratio: 1.280851e-01	ci left: 3.638429e-03	ci right 4.140336e-03	k: 932	n:240000
C2orf86   240000 perm   82 sec   (2939 perm/sec)   p_kst 3.883333e-03   p_cons 9.463208e-01   p_joint 1.072083e-02

Joint ci ratio: 7.641719e-02	ci left: 1.001779e-02	ci right 1.081763e-02	k: 2603	n:250000
Cons ci ratio: 1.864660e-03	ci left: 9.455744e-01	ci right 9.473432e-01	k: 236616	n:250000
KS ci ratio: 1.256190e-01	ci left: 3.636195e-03	ci right 4.127417e-03	k: 969	n:250000
C2orf86   250000 perm   88 sec   (2846 perm/sec)   p_kst 3.876000e-03   p_cons 9.464640e-01   p_joint 1.041200e-02

Joint ci ratio: 7.525909e-02	ci left: 9.938100e-03	ci right 1.071903e-02	k: 2684	n:260000
Cons ci ratio: 1.829463e-03	ci left: 9.455351e-01	ci right 9.472703e-01	k: 246066	n:260000
KS ci ratio: 1.233515e-01	ci left: 3.630491e-03	ci right 4.111442e-03	k: 1005	n:260000
C2orf86   260000 perm   93 sec   (2798 perm/sec)   p_kst 3.865385e-03   p_cons 9.464077e-01   p_joint 1.032308e-02

Joint ci ratio: 6.981777e-02	ci left: 1.113763e-02	ci right 1.194698e-02	k: 3115	n:270000
Cons ci ratio: 1.795792e-03	ci left: 9.455214e-01	ci right 9.472245e-01	k: 255522	n:270000
KS ci ratio: 1.211442e-01	ci left: 3.628874e-03	ci right 4.100392e-03	k: 1042	n:270000
C2orf86   270000 perm   98 sec   (2749 perm/sec)   p_kst 3.859259e-03   p_cons 9.463778e-01   p_joint 1.153704e-02

Joint ci ratio: 7.541487e-02	ci left: 9.196566e-03	ci right 9.920782e-03	k: 2675	n:280000
Cons ci ratio: 1.760064e-03	ci left: 9.457320e-01	ci right 9.474016e-01	k: 265040	n:280000
KS ci ratio: 1.188306e-01	ci left: 3.641307e-03	ci right 4.104770e-03	k: 1083	n:280000
C2orf86   280000 perm   103 sec   (2730 perm/sec)   p_kst 3.867857e-03   p_cons 9.465714e-01   p_joint 9.553571e-03

Joint ci ratio: 7.443707e-02	ci left: 9.119670e-03	ci right 9.828116e-03	k: 2746	n:290000
Cons ci ratio: 1.730730e-03	ci left: 9.456713e-01	ci right 9.473128e-01	k: 274484	n:290000
KS ci ratio: 1.165927e-01	ci left: 3.656309e-03	ci right 4.112314e-03	k: 1125	n:290000
C2orf86   290000 perm   107 sec   (2704 perm/sec)   p_kst 3.879310e-03   p_cons 9.464966e-01   p_joint 9.468966e-03

Joint ci ratio: 7.333883e-02	ci left: 9.087230e-03	ci right 9.782296e-03	k: 2829	n:300000
Cons ci ratio: 1.699620e-03	ci left: 9.458063e-01	ci right 9.474184e-01	k: 283985	n:300000
KS ci ratio: 1.149718e-01	ci left: 3.638008e-03	ci right 4.084994e-03	k: 1157	n:300000
C2orf86   300000 perm   112 sec   (2677 perm/sec)   p_kst 3.856667e-03   p_cons 9.466167e-01   p_joint 9.430000e-03

Joint ci ratio: 7.296082e-02	ci left: 8.889064e-03	ci right 9.565319e-03	k: 2859	n:310000
Cons ci ratio: 1.673217e-03	ci left: 9.457443e-01	ci right 9.473312e-01	k: 293428	n:310000
KS ci ratio: 1.134645e-01	ci left: 3.617794e-03	ci right 4.056078e-03	k: 1188	n:310000
C2orf86   310000 perm   117 sec   (2651 perm/sec)   p_kst 3.832258e-03   p_cons 9.465419e-01   p_joint 9.222581e-03

Joint ci ratio: 7.193801e-02	ci left: 8.862884e-03	ci right 9.527300e-03	k: 2941	n:320000
Cons ci ratio: 1.647699e-03	ci left: 9.457053e-01	ci right 9.472679e-01	k: 302877	n:320000
KS ci ratio: 1.115114e-01	ci left: 3.632296e-03	ci right 4.064265e-03	k: 1230	n:320000
C2orf86   320000 perm   122 sec   (2626 perm/sec)   p_kst 3.843750e-03   p_cons 9.464906e-01   p_joint 9.190625e-03

Joint ci ratio: 7.492152e-02	ci left: 7.918913e-03	ci right 8.538254e-03	k: 2714	n:330000
Cons ci ratio: 1.622147e-03	ci left: 9.457420e-01	ci right 9.472804e-01	k: 312350	n:330000
KS ci ratio: 1.096991e-01	ci left: 3.643033e-03	ci right 4.068783e-03	k: 1271	n:330000
C2orf86   330000 perm   127 sec   (2603 perm/sec)   p_kst 3.851515e-03   p_cons 9.465152e-01   p_joint 8.224242e-03

Joint ci ratio: 7.423104e-02	ci left: 7.833194e-03	ci right 8.439940e-03	k: 2765	n:340000
Cons ci ratio: 1.598909e-03	ci left: 9.457028e-01	ci right 9.472190e-01	k: 321798	n:340000
KS ci ratio: 1.079724e-01	ci left: 3.653192e-03	ci right 4.072981e-03	k: 1312	n:340000
C2orf86   340000 perm   132 sec   (2582 perm/sec)   p_kst 3.858824e-03   p_cons 9.464647e-01   p_joint 8.132353e-03

Joint ci ratio: 7.332345e-02	ci left: 7.802889e-03	ci right 8.399584e-03	k: 2834	n:350000
Cons ci ratio: 1.576730e-03	ci left: 9.456602e-01	ci right 9.471552e-01	k: 331244	n:350000
KS ci ratio: 1.062460e-01	ci left: 3.668382e-03	ci right 4.082756e-03	k: 1355	n:350000
C2orf86   350000 perm   137 sec   (2556 perm/sec)   p_kst 3.871429e-03   p_cons 9.464114e-01   p_joint 8.097143e-03

Joint ci ratio: 7.238554e-02	ci left: 7.787951e-03	ci right 8.375564e-03	k: 2908	n:360000
Cons ci ratio: 1.555617e-03	ci left: 9.456090e-01	ci right 9.470838e-01	k: 340686	n:360000
KS ci ratio: 1.049393e-01	ci left: 3.658432e-03	ci right 4.066285e-03	k: 1389	n:360000
C2orf86   360000 perm   142 sec   (2536 perm/sec)   p_kst 3.858333e-03   p_cons 9.463500e-01   p_joint 8.077778e-03

Joint ci ratio: 6.842675e-02	ci left: 8.490940e-03	ci right 9.095169e-03	k: 3252	n:370000
Cons ci ratio: 1.673127e-03	ci left: 9.360656e-01	ci right 9.376357e-01	k: 346636	n:370000
KS ci ratio: 1.038261e-01	ci left: 3.638517e-03	ci right 4.039585e-03	k: 1419	n:370000
C2orf86   370000 perm   147 sec   (2515 perm/sec)   p_kst 3.835135e-03   p_cons 9.368541e-01   p_joint 8.789189e-03

Joint ci ratio: 6.865861e-02	ci left: 8.213138e-03	ci right 8.799657e-03	k: 3231	n:380000
Cons ci ratio: 1.649772e-03	ci left: 9.361620e-01	ci right 9.377103e-01	k: 356037	n:380000
KS ci ratio: 1.025348e-01	ci left: 3.635059e-03	ci right 4.030461e-03	k: 1455	n:380000
C2orf86   380000 perm   152 sec   (2495 perm/sec)   p_kst 3.828947e-03   p_cons 9.369395e-01   p_joint 8.502632e-03

Joint ci ratio: 6.811578e-02	ci left: 8.133587e-03	ci right 8.709650e-03	k: 3283	n:390000
Cons ci ratio: 1.628285e-03	ci left: 9.361865e-01	ci right 9.377147e-01	k: 365412	n:390000
KS ci ratio: 1.013929e-01	ci left: 3.624309e-03	ci right 4.013890e-03	k: 1488	n:390000
C2orf86   390000 perm   158 sec   (2476 perm/sec)   p_kst 3.815385e-03   p_cons 9.369538e-01   p_joint 8.417949e-03

Joint ci ratio: 6.763669e-02	ci left: 8.045741e-03	ci right 8.611417e-03	k: 3330	n:400000
Cons ci ratio: 1.518750e-03	ci left: 9.426392e-01	ci right 9.440744e-01	k: 377344	n:400000
KS ci ratio: 1.005206e-01	ci left: 3.597057e-03	ci right 3.980186e-03	k: 1514	n:400000
C2orf86   400000 perm   163 sec   (2455 perm/sec)   p_kst 3.785000e-03   p_cons 9.433600e-01   p_joint 8.325000e-03

Joint ci ratio: 6.678975e-02	ci left: 8.053337e-03	ci right 8.612182e-03	k: 3415	n:410000
Cons ci ratio: 1.500237e-03	ci left: 9.426393e-01	ci right 9.440569e-01	k: 386774	n:410000
KS ci ratio: 9.902749e-02	ci left: 3.618721e-03	ci right 3.998100e-03	k: 1560	n:410000
C2orf86   410000 perm   168 sec   (2436 perm/sec)   p_kst 3.804878e-03   p_cons 9.433512e-01   p_joint 8.329268e-03

Outputting figure to mutsig2_images.part000000000025/C2orf86.7_2339_410000_0.0038049_0.94335_0.0083293.png
                gene_name: C2orf86
               theta_stop: 0.099 
                    nperm: 410000 
                     p_ks: 0.0038 
        ci_ks_bounds_left: 0.0036 
       ci_ks_bounds_right: 0.0040 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.0083 
     ci_joint_bounds_left: 0.0081 
    ci_joint_bounds_right: 0.0086 

Current progress: 11 percent done.
C3orf30
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.583430e-02	ci left: 5.348776e-01	ci right 5.544964e-01	k: 5447	n:10000
Cons ci ratio: 3.910801e-02	ci left: 4.912511e-01	ci right 5.109483e-01	k: 5011	n:10000
KS ci ratio: 4.357574e-02	ci left: 4.374215e-01	ci right 4.570092e-01	k: 4472	n:10000
C3orf30   10000 perm   2 sec   (5700 perm/sec)   p_kst 4.472000e-01   p_cons 5.011000e-01   p_joint 5.447000e-01

Outputting figure to mutsig2_images.part000000000025/C3orf30.7_1623_10000_0.4472_0.5011_0.5447.png
                gene_name: C3orf30
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 14 percent done.
C3orf15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.020515e-02	ci left: 7.819844e-01	ci right 7.980463e-01	k: 7901	n:10000
Cons ci ratio: 3.620425e-02	ci left: 5.297706e-01	ci right 5.494063e-01	k: 5396	n:10000
KS ci ratio: 3.796719e-02	ci left: 5.060517e-01	ci right 5.257390e-01	k: 5159	n:10000
C3orf15   10000 perm   2 sec   (5147 perm/sec)   p_kst 5.159000e-01   p_cons 5.396000e-01   p_joint 7.901000e-01

Outputting figure to mutsig2_images.part000000000025/C3orf15.6_2372_10000_0.5159_0.5396_0.7901.png
                gene_name: C3orf15
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 18 percent done.
C3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.386189e-02	ci left: 8.825771e-01	ci right 8.949954e-01	k: 8889	n:10000
Cons ci ratio: 2.876252e-02	ci left: 6.405589e-01	ci right 6.593536e-01	k: 6500	n:10000
KS ci ratio: 6.614789e-03	ci left: 9.689983e-01	ci right 9.755227e-01	k: 9724	n:10000
C3   10000 perm   2 sec   (4614 perm/sec)   p_kst 9.724000e-01   p_cons 6.500000e-01   p_joint 8.889000e-01

Outputting figure to mutsig2_images.part000000000025/C3.5_5156_10000_0.9724_0.65_0.8889.png
                gene_name: C3
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 21 percent done.
C4orf31
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.204321e-02	ci left: 5.897180e-01	ci right 6.090241e-01	k: 5994	n:10000
Cons ci ratio: 9.155892e-02	ci left: 1.477618e-01	ci right 1.620398e-01	k: 1548	n:10000
KS ci ratio: 1.948433e-02	ci left: 7.939508e-01	ci right 8.096730e-01	k: 8019	n:10000
C4orf31   10000 perm   2 sec   (6053 perm/sec)   p_kst 8.019000e-01   p_cons 1.548000e-01   p_joint 5.994000e-01

Outputting figure to mutsig2_images.part000000000025/C4orf31.4_1719_10000_0.8019_0.1548_0.5994.png
                gene_name: C4orf31
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 25 percent done.
C3orf20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.953784e-02	ci left: 6.282906e-01	ci right 6.472290e-01	k: 6378	n:10000
KS ci ratio: 3.057533e-02	ci left: 6.121106e-01	ci right 6.312185e-01	k: 6217	n:10000
C3orf20   10000 perm   2 sec   (5548 perm/sec)   p_kst 6.217000e-01   p_cons 6.378000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000025/C3orf20.3_2775_10000_0.6217_0.6378_1.png
                gene_name: C3orf20
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 29 percent done.
C3orf33
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.794440e-02	ci left: 5.063518e-01	ci right 5.260388e-01	k: 5162	n:10000
Cons ci ratio: 5.584290e-02	ci left: 3.207846e-01	ci right 3.393145e-01	k: 3300	n:10000
KS ci ratio: 4.835253e-02	ci left: 3.868937e-01	ci right 4.061666e-01	k: 3965	n:10000
C3orf33   10000 perm   2 sec   (6423 perm/sec)   p_kst 3.965000e-01   p_cons 3.300000e-01   p_joint 5.162000e-01

Outputting figure to mutsig2_images.part000000000025/C3orf33.3_772_10000_0.3965_0.33_0.5162.png
                gene_name: C3orf33
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 32 percent done.
C3orf63
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.745527e-02	ci left: 3.958555e-01	ci right 4.151996e-01	k: 4055	n:10000
Cons ci ratio: 6.625207e-02	ci left: 2.506326e-01	ci right 2.679078e-01	k: 2592	n:10000
KS ci ratio: 4.357574e-02	ci left: 4.374215e-01	ci right 4.570092e-01	k: 4472	n:10000
C3orf63   10000 perm   2 sec   (4750 perm/sec)   p_kst 4.472000e-01   p_cons 2.592000e-01   p_joint 4.055000e-01

Outputting figure to mutsig2_images.part000000000025/C3orf63.3_5169_10000_0.4472_0.2592_0.4055.png
                gene_name: C3orf63
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 36 percent done.
C3orf70
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.080951e-02	ci left: 9.242033e-01	ci right 9.343450e-01	k: 9294	n:10000
KS ci ratio: 1.997354e-02	ci left: 7.858368e-01	ci right 8.017917e-01	k: 7939	n:10000
C3orf70   10000 perm   2 sec   (6432 perm/sec)   p_kst 7.939000e-01   p_cons 9.294000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000025/C3orf70.3_761_10000_0.7939_0.9294_1.png
                gene_name: C3orf70
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 39 percent done.
C5AR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.079994e-01	ci left: 1.100791e-01	ci right 1.227454e-01	k: 1163	n:10000
Cons ci ratio: 1.445485e-01	ci left: 6.352868e-02	ci right 7.352445e-02	k: 684	n:10000
KS ci ratio: 4.867731e-02	ci left: 3.837082e-01	ci right 4.029540e-01	k: 3933	n:10000
C5AR1   10000 perm   2 sec   (5989 perm/sec)   p_kst 3.933000e-01   p_cons 6.840000e-02   p_joint 1.163000e-01

Joint ci ratio: 6.974495e-02	ci left: 1.316222e-01	ci right 1.411837e-01	k: 2727	n:20000
Cons ci ratio: 9.921401e-02	ci left: 6.879694e-02	ci right 7.602796e-02	k: 1447	n:20000
KS ci ratio: 3.422945e-02	ci left: 3.892126e-01	ci right 4.028177e-01	k: 7920	n:20000
C5AR1   20000 perm   4 sec   (5350 perm/sec)   p_kst 3.960000e-01   p_cons 7.235000e-02   p_joint 1.363500e-01

Outputting figure to mutsig2_images.part000000000025/C5AR1.3_1060_20000_0.396_0.07235_0.13635.png
                gene_name: C5AR1
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.072 
      ci_cons_bounds_left: 0.069 
     ci_cons_bounds_right: 0.076 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 43 percent done.
C5orf22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.978118e-02	ci left: 6.244707e-01	ci right 6.434512e-01	k: 6340	n:10000
Cons ci ratio: 4.859582e-02	ci left: 3.845045e-01	ci right 4.037572e-01	k: 3941	n:10000
KS ci ratio: 4.325118e-02	ci left: 4.411130e-01	ci right 4.607156e-01	k: 4509	n:10000
C5orf22   10000 perm   2 sec   (6318 perm/sec)   p_kst 4.509000e-01   p_cons 3.941000e-01   p_joint 6.340000e-01

Outputting figure to mutsig2_images.part000000000025/C5orf22.3_1365_10000_0.4509_0.3941_0.634.png
                gene_name: C5orf22
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 46 percent done.
C2orf85
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.608933e-02	ci left: 6.838544e-01	ci right 7.020331e-01	k: 6930	n:10000
Cons ci ratio: 2.826493e-02	ci left: 6.485067e-01	ci right 6.672012e-01	k: 6579	n:10000
KS ci ratio: 6.106854e-02	ci left: 2.828028e-01	ci right 3.007187e-01	k: 2917	n:10000
C2orf85   10000 perm   2 sec   (6195 perm/sec)   p_kst 2.917000e-01   p_cons 6.579000e-01   p_joint 6.930000e-01

Outputting figure to mutsig2_images.part000000000025/C2orf85.2_1727_10000_0.2917_0.6579_0.693.png
                gene_name: C2orf85
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 50 percent done.
C3AR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.414779e-02	ci left: 8.783802e-01	ci right 8.909947e-01	k: 8848	n:10000
Cons ci ratio: 1.482583e-02	ci left: 8.682565e-01	ci right 8.813243e-01	k: 8749	n:10000
KS ci ratio: 3.961172e-02	ci left: 4.848535e-01	ci right 5.045496e-01	k: 4947	n:10000
C3AR1   10000 perm   2 sec   (6104 perm/sec)   p_kst 4.947000e-01   p_cons 8.749000e-01   p_joint 8.848000e-01

Outputting figure to mutsig2_images.part000000000025/C3AR1.2_1453_10000_0.4947_0.8749_0.8848.png
                gene_name: C3AR1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 54 percent done.
C3orf17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.749659e-02	ci left: 8.264586e-01	ci right 8.411464e-01	k: 8339	n:10000
Cons ci ratio: 1.320792e-02	ci left: 8.920044e-01	ci right 9.039627e-01	k: 8981	n:10000
KS ci ratio: 3.179695e-02	ci left: 5.934319e-01	ci right 6.127080e-01	k: 6031	n:10000
C3orf17   10000 perm   2 sec   (6489 perm/sec)   p_kst 6.031000e-01   p_cons 8.981000e-01   p_joint 8.339000e-01

Outputting figure to mutsig2_images.part000000000025/C3orf17.2_1740_10000_0.6031_0.8981_0.8339.png
                gene_name: C3orf17
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 57 percent done.
C3orf19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.412351e-02	ci left: 7.164367e-01	ci right 7.340319e-01	k: 7253	n:10000
Cons ci ratio: 6.253337e-02	ci left: 2.731952e-01	ci right 2.909319e-01	k: 2820	n:10000
KS ci ratio: 3.414049e-02	ci left: 5.588240e-01	ci right 5.783360e-01	k: 5686	n:10000
C3orf19   10000 perm   2 sec   (6404 perm/sec)   p_kst 5.686000e-01   p_cons 2.820000e-01   p_joint 7.253000e-01

Outputting figure to mutsig2_images.part000000000025/C3orf19.2_1448_10000_0.5686_0.282_0.7253.png
                gene_name: C3orf19
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 61 percent done.
C3orf27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.126343e-02	ci left: 9.184254e-01	ci right 9.289262e-01	k: 9238	n:10000
Cons ci ratio: 2.917451e-02	ci left: 6.340217e-01	ci right 6.528946e-01	k: 6435	n:10000
KS ci ratio: 2.723572e-02	ci left: 6.651158e-01	ci right 6.835825e-01	k: 6744	n:10000
C3orf27   10000 perm   1 sec   (6892 perm/sec)   p_kst 6.744000e-01   p_cons 6.435000e-01   p_joint 9.238000e-01

Outputting figure to mutsig2_images.part000000000025/C3orf27.2_454_10000_0.6744_0.6435_0.9238.png
                gene_name: C3orf27
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 64 percent done.
C3orf34
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.351411e-02	ci left: 4.381199e-01	ci right 4.577105e-01	k: 4479	n:10000
Cons ci ratio: 1.868369e-02	ci left: 8.071466e-01	ci right 8.224696e-01	k: 8149	n:10000
KS ci ratio: 7.596042e-02	ci left: 2.022494e-01	ci right 2.183197e-01	k: 2102	n:10000
C3orf34   10000 perm   1 sec   (7006 perm/sec)   p_kst 2.102000e-01   p_cons 8.149000e-01   p_joint 4.479000e-01

Outputting figure to mutsig2_images.part000000000025/C3orf34.2_512_10000_0.2102_0.8149_0.4479.png
                gene_name: C3orf34
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 68 percent done.
C3orf37
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.915327e-02	ci left: 1.547295e-01	ci right 1.692679e-01	k: 1619	n:10000
Cons ci ratio: 6.668601e-02	ci left: 2.481605e-01	ci right 2.653814e-01	k: 2567	n:10000
KS ci ratio: 5.612182e-02	ci left: 3.186009e-01	ci right 3.370994e-01	k: 3278	n:10000
C3orf37   10000 perm   2 sec   (6442 perm/sec)   p_kst 3.278000e-01   p_cons 2.567000e-01   p_joint 1.619000e-01

Outputting figure to mutsig2_images.part000000000025/C3orf37.2_1089_10000_0.3278_0.2567_0.1619.png
                gene_name: C3orf37
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.17 

Current progress: 71 percent done.
C3orf38
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.157110e-02	ci left: 3.566483e-01	ci right 3.756298e-01	k: 3661	n:10000
Cons ci ratio: 8.096203e-02	ci left: 1.821553e-01	ci right 1.976258e-01	k: 1898	n:10000
KS ci ratio: 5.904794e-02	ci left: 2.967772e-01	ci right 3.149361e-01	k: 3058	n:10000
C3orf38   10000 perm   1 sec   (6673 perm/sec)   p_kst 3.058000e-01   p_cons 1.898000e-01   p_joint 3.661000e-01

Outputting figure to mutsig2_images.part000000000025/C3orf38.2_1002_10000_0.3058_0.1898_0.3661.png
                gene_name: C3orf38
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 75 percent done.
C3orf64
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.132409e-01	ci left: 1.009091e-01	ci right 1.131209e-01	k: 1069	n:10000
KS ci ratio: 2.519761e-02	ci left: 6.985753e-01	ci right 7.165037e-01	k: 7076	n:10000
C3orf64   10000 perm   2 sec   (6658 perm/sec)   p_kst 7.076000e-01   p_cons 1.069000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 8.213131e-02	ci left: 9.803498e-02	ci right 1.064811e-01	k: 2044	n:20000
KS ci ratio: 1.774683e-02	ci left: 7.029014e-01	ci right 7.155377e-01	k: 14185	n:20000
C3orf64   20000 perm   3 sec   (5848 perm/sec)   p_kst 7.092500e-01   p_cons 1.022000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000025/C3orf64.2_1380_20000_0.70925_0.1022_1.png
                gene_name: C3orf64
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.098 
     ci_cons_bounds_right: 0.11 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
C4BPA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.585912e-02	ci left: 4.123937e-01	ci right 4.318517e-01	k: 4221	n:10000
KS ci ratio: 5.857854e-02	ci left: 3.001484e-01	ci right 3.183629e-01	k: 3092	n:10000
C4BPA   10000 perm   2 sec   (6213 perm/sec)   p_kst 3.092000e-01   p_cons 4.221000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000025/C4BPA.2_1838_10000_0.3092_0.4221_1.png
                gene_name: C4BPA
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
C4orf19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.836201e-03	ci left: 9.825290e-01	ci right 9.873825e-01	k: 9851	n:10000
Cons ci ratio: 1.300507e-03	ci left: 9.981617e-01	ci right 9.995204e-01	k: 9990	n:10000
KS ci ratio: 3.379388e-02	ci left: 5.638367e-01	ci right 5.833204e-01	k: 5736	n:10000
C4orf19   10000 perm   1 sec   (6783 perm/sec)   p_kst 5.736000e-01   p_cons 9.990000e-01   p_joint 9.851000e-01

Outputting figure to mutsig2_images.part000000000025/C4orf19.2_953_10000_0.5736_0.999_0.9851.png
                gene_name: C4orf19
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 86 percent done.
C4orf37
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.448086e-02	ci left: 7.104810e-01	ci right 7.281911e-01	k: 7194	n:10000
KS ci ratio: 1.596919e-02	ci left: 8.506986e-01	ci right 8.644924e-01	k: 8577	n:10000
C4orf37   10000 perm   2 sec   (6415 perm/sec)   p_kst 8.577000e-01   p_cons 7.194000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000025/C4orf37.2_1424_10000_0.8577_0.7194_1.png
                gene_name: C4orf37
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
C4orf41
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.181286e-02	ci left: 4.578813e-01	ci right 4.775376e-01	k: 4677	n:10000
KS ci ratio: 8.205735e-03	ci left: 9.539874e-01	ci right 9.619430e-01	k: 9581	n:10000
C4orf41   10000 perm   2 sec   (5530 perm/sec)   p_kst 9.581000e-01   p_cons 4.677000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000025/C4orf41.2_3518_10000_0.9581_0.4677_1.png
                gene_name: C4orf41
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
C4orf46
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.749029e-02	ci left: 6.609875e-01	ci right 6.795132e-01	k: 6703	n:10000
KS ci ratio: 1.781757e-02	ci left: 8.212717e-01	ci right 8.361363e-01	k: 8288	n:10000
C4orf46   10000 perm   1 sec   (7132 perm/sec)   p_kst 8.288000e-01   p_cons 6.703000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000025/C4orf46.2_350_10000_0.8288_0.6703_1.png
                gene_name: C4orf46
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
C4orf51
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.139078e-02	ci left: 9.167762e-01	ci right 9.273764e-01	k: 9222	n:10000
Cons ci ratio: 1.747133e-02	ci left: 8.268655e-01	ci right 8.415392e-01	k: 8343	n:10000
KS ci ratio: 3.202320e-02	ci left: 5.900191e-01	ci right 6.093228e-01	k: 5997	n:10000
C4orf51   10000 perm   1 sec   (6726 perm/sec)   p_kst 5.997000e-01   p_cons 8.343000e-01   p_joint 9.222000e-01

Outputting figure to mutsig2_images.part000000000025/C4orf51.2_633_10000_0.5997_0.8343_0.9222.png
                gene_name: C4orf51
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000025
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 25 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1708>
Subject: Job 8003923: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1708>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000026> was used as the working directory.
Started at Sun Nov 11 15:04:17 2012
Results reported at Sun Nov 11 15:11:22 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000026.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000026.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 26  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000026.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    454.60 sec.
    Max Memory :      4713 MB
    Max Swap   :      7087 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
26
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 26
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 26: processing genes 2263 - 2352
Calculating significance of each gene.
Using projection method.
2263	C5orf30	5.068817e-01
2264	C5orf32	1
2265	C5orf33	6.348527e-01
2266	C5orf34	1
2267	C5orf35	1
2268	C5orf36	1
2269	C5orf38	1.213790e-01
2270	C5orf39	1
2271	C5orf4	1.773184e-01
2272	C5orf40	6.231390e-01
2273	C5orf41	8.523798e-01
2274	C5orf42	7.986062e-01
2275	C5orf43	1
2276	C5orf44	1
2277	C5orf45	6.911955e-01
2278	C5orf46	1.516376e-01
2279	C5orf48	1
2280	C5orf49	7.092558e-02
2281	C5orf51	1
2282	C5orf53	1
2283	C5orf54	1
2284	C5orf55	1
2285	C5orf56	2.000858e-01
2286	C5orf58	1
2287	C5orf62	1
2288	C6	6.414751e-01
2289	C6orf1	1
2290	C6orf10	1
2291	C6orf105	1.455428e-01
2292	C6orf106	7.354218e-01
2293	C6orf108	1
2294	C6orf114	1
2295	C6orf115	1
2296	C6orf118	1
2297	C6orf120	4.244633e-01
2298	C6orf125	1
2299	C6orf126	1
2300	C6orf127	2.469319e-01
2301	C6orf129	1
2302	C6orf130	1
2303	C6orf134	7.372580e-01
2304	C6orf136	3.098976e-01
2305	C6orf138	2.647722e-03
2306	C6orf142	8.380916e-02
2307	C6orf145	4.380978e-01
2308	C6orf146	8.026874e-01
2309	C6orf15	5.526776e-01
2310	C6orf150	1
2311	C6orf153	1.284595e-01
2312	C6orf154	1
2313	C6orf162	2.057686e-01
2314	C6orf165	4.137410e-02
2315	C6orf167	2.677499e-01
2316	C6orf168	1
2317	C6orf170	9.864270e-01
2318	C6orf174	3.691335e-01
2319	C6orf182	4.884925e-01
2320	C6orf186	2.464268e-01
2321	C6orf191	1.849609e-02
2322	C6orf192	5.254334e-01
2323	C6orf195	3.527184e-01
2324	C6orf201	2.824441e-01
2325	C6orf203	4.620964e-01
2326	C6orf204	1
2327	C6orf211	8.442057e-01
2328	C6orf221	1
2329	C6orf222	6.463057e-01
2330	C6orf223	4.323753e-01
2331	C6orf225	1
2332	C6orf226	2.538231e-01
2333	C6orf25	1.255317e-01
2334	C6orf26	1
2335	C6orf27	9.695223e-01
2336	C6orf35	3.048049e-01
2337	C6orf47	6.215799e-01
2338	C6orf48	1
2339	C6orf57	1
2340	C6orf58	1.113887e-01
2341	C6orf62	6.591016e-01
2342	C6orf64	3.157106e-01
2343	C6orf70	5.871840e-01
2344	C6orf72	3.789525e-01
2345	C6orf81	1
2346	C6orf89	7.988918e-01
2347	C6orf97	1.186971e-04
2348	C7	9.373973e-01
2349	C7orf10	1
2350	C7orf11	1
2351	C7orf16	6.362896e-02
2352	C7orf23	1
Done

Running MutSig 2:
Scatter job 26: processing genes 2263 - 2352
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
C6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.806611e-02	ci left: 5.047513e-01	ci right 5.244402e-01	k: 5146	n:10000
Cons ci ratio: 3.687980e-02	ci left: 5.205606e-01	ci right 5.402216e-01	k: 5304	n:10000
KS ci ratio: 5.907576e-02	ci left: 2.965789e-01	ci right 3.147345e-01	k: 3056	n:10000
C6   10000 perm   3 sec   (3991 perm/sec)   p_kst 3.056000e-01   p_cons 5.304000e-01   p_joint 5.146000e-01

Outputting figure to mutsig2_images.part000000000026/C6.18_2873_10000_0.3056_0.5304_0.5146.png
                gene_name: C6
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 3 percent done.
C6orf138
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.343944e-01	ci left: 7.310807e-02	ci right 8.373906e-02	k: 783	n:10000
Cons ci ratio: 9.584355e-02	ci left: 1.363893e-01	ci right 1.502192e-01	k: 1432	n:10000
KS ci ratio: 8.776711e-02	ci left: 1.589518e-01	ci right 1.736431e-01	k: 1662	n:10000
C6orf138   10000 perm   2 sec   (4025 perm/sec)   p_kst 1.662000e-01   p_cons 1.432000e-01   p_joint 7.830000e-02

Joint ci ratio: 8.219848e-02	ci left: 9.788774e-02	ci right 1.063283e-01	k: 2041	n:20000
Cons ci ratio: 6.741621e-02	ci left: 1.397034e-01	ci right 1.495001e-01	k: 2891	n:20000
KS ci ratio: 6.482964e-02	ci left: 1.495164e-01	ci right 1.595842e-01	k: 3090	n:20000
C6orf138   20000 perm   5 sec   (3904 perm/sec)   p_kst 1.545000e-01   p_cons 1.445500e-01   p_joint 1.020500e-01

Outputting figure to mutsig2_images.part000000000026/C6orf138.12_2553_20000_0.1545_0.14455_0.10205.png
                gene_name: C6orf138
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.098 
    ci_joint_bounds_right: 0.11 

Current progress: 6 percent done.
C6orf97
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.829530e-02	ci left: 5.017506e-01	ci right 5.214426e-01	k: 5116	n:10000
KS ci ratio: 2.236025e-02	ci left: 7.459413e-01	ci right 7.629103e-01	k: 7545	n:10000
C6orf97   10000 perm   2 sec   (5076 perm/sec)   p_kst 7.545000e-01   p_cons 5.116000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000026/C6orf97.12_2192_10000_0.7545_0.5116_1.png
                gene_name: C6orf97
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 10 percent done.
C7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.418225e-02	ci left: 5.582226e-01	ci right 5.777378e-01	k: 5680	n:10000
KS ci ratio: 9.206414e-03	ci left: 9.432583e-01	ci right 9.520786e-01	k: 9478	n:10000
C7   10000 perm   3 sec   (3535 perm/sec)   p_kst 9.478000e-01   p_cons 5.680000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000026/C7.12_2604_10000_0.9478_0.568_1.png
                gene_name: C7
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 13 percent done.
C5orf42
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.298409e-02	ci left: 2.703238e-01	ci right 2.880050e-01	k: 2791	n:10000
Cons ci ratio: 6.119212e-03	ci left: 9.731262e-01	ci right 9.791920e-01	k: 9763	n:10000
KS ci ratio: 9.079719e-02	ci left: 1.499203e-01	ci right 1.642801e-01	k: 1570	n:10000
C5orf42   10000 perm   3 sec   (3166 perm/sec)   p_kst 1.570000e-01   p_cons 9.763000e-01   p_joint 2.791000e-01

Outputting figure to mutsig2_images.part000000000026/C5orf42.8_9798_10000_0.157_0.9763_0.2791.png
                gene_name: C5orf42
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 16 percent done.
C6orf167
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.411309e-02	ci left: 8.788919e-01	ci right 8.914828e-01	k: 8853	n:10000
KS ci ratio: 2.569156e-02	ci left: 6.904069e-01	ci right 7.084768e-01	k: 6995	n:10000
C6orf167   10000 perm   2 sec   (4721 perm/sec)   p_kst 6.995000e-01   p_cons 8.853000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000026/C6orf167.8_3828_10000_0.6995_0.8853_1.png
                gene_name: C6orf167
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 19 percent done.
C6orf174
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.118988e-01	ci left: 1.031515e-01	ci right 1.154771e-01	k: 1092	n:10000
Cons ci ratio: 4.378784e-02	ci left: 4.350274e-01	ci right 4.546048e-01	k: 4448	n:10000
KS ci ratio: 1.315040e-01	ci left: 7.620996e-02	ci right 8.703524e-02	k: 815	n:10000
C6orf174   10000 perm   2 sec   (5220 perm/sec)   p_kst 8.150000e-02   p_cons 4.448000e-01   p_joint 1.092000e-01

Joint ci ratio: 8.755103e-02	ci left: 8.709768e-02	ci right 9.512166e-02	k: 1821	n:20000
Cons ci ratio: 2.994837e-02	ci left: 4.544223e-01	ci right 4.682890e-01	k: 9227	n:20000
KS ci ratio: 9.500031e-02	ci left: 7.471117e-02	ci right 8.221193e-02	k: 1568	n:20000
C6orf174   20000 perm   4 sec   (4705 perm/sec)   p_kst 7.840000e-02   p_cons 4.613500e-01   p_joint 9.105000e-02

Outputting figure to mutsig2_images.part000000000026/C6orf174.8_2868_20000_0.0784_0.46135_0.09105.png
                gene_name: C6orf174
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.078 
        ci_ks_bounds_left: 0.075 
       ci_ks_bounds_right: 0.082 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.091 
     ci_joint_bounds_left: 0.087 
    ci_joint_bounds_right: 0.095 

Current progress: 23 percent done.
C6orf165
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.416248e-02	ci left: 1.407013e-01	ci right 1.547046e-01	k: 1476	n:10000
Cons ci ratio: 1.900600e-01	ci left: 3.691153e-02	ci right 4.475883e-02	k: 407	n:10000
KS ci ratio: 3.887410e-02	ci left: 4.942505e-01	ci right 5.139471e-01	k: 5041	n:10000
C6orf165   10000 perm   2 sec   (5741 perm/sec)   p_kst 5.041000e-01   p_cons 4.070000e-02   p_joint 1.476000e-01

Joint ci ratio: 6.187209e-02	ci left: 1.619533e-01	ci right 1.723436e-01	k: 3342	n:20000
Cons ci ratio: 1.264445e-01	ci left: 4.294396e-02	ci right 4.878899e-02	k: 916	n:20000
KS ci ratio: 2.768327e-02	ci left: 4.936458e-01	ci right 5.075540e-01	k: 10012	n:20000
C6orf165   20000 perm   4 sec   (5126 perm/sec)   p_kst 5.006000e-01   p_cons 4.580000e-02   p_joint 1.671000e-01

Joint ci ratio: 5.896529e-02	ci left: 1.246010e-01	ci right 1.322045e-01	k: 3851	n:30000
Cons ci ratio: 1.034592e-01	ci left: 4.329927e-02	ci right 4.805588e-02	k: 1369	n:30000
KS ci ratio: 2.261441e-02	ci left: 4.946923e-01	ci right 5.060410e-01	k: 15011	n:30000
C6orf165   30000 perm   6 sec   (4888 perm/sec)   p_kst 5.003667e-01   p_cons 4.563333e-02   p_joint 1.283667e-01

Joint ci ratio: 5.148041e-02	ci left: 1.233313e-01	ci right 1.298730e-01	k: 5063	n:40000
Cons ci ratio: 8.969304e-02	ci left: 4.352722e-02	ci right 4.763907e-02	k: 1822	n:40000
KS ci ratio: 1.961005e-02	ci left: 4.948128e-01	ci right 5.046373e-01	k: 19989	n:40000
C6orf165   40000 perm   8 sec   (4742 perm/sec)   p_kst 4.997250e-01   p_cons 4.555000e-02   p_joint 1.265750e-01

Outputting figure to mutsig2_images.part000000000026/C6orf165.6_1917_40000_0.49972_0.04555_0.12657.png
                gene_name: C6orf165
               theta_stop: 0.090 
                    nperm: 40000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.046 
      ci_cons_bounds_left: 0.044 
     ci_cons_bounds_right: 0.048 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 26 percent done.
C6orf170
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.371229e-02	ci left: 7.233032e-01	ci right 7.407614e-01	k: 7321	n:10000
KS ci ratio: 1.595611e-02	ci left: 8.509025e-01	ci right 8.646883e-01	k: 8579	n:10000
C6orf170   10000 perm   2 sec   (4963 perm/sec)   p_kst 8.579000e-01   p_cons 7.321000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000026/C6orf170.6_3902_10000_0.8579_0.7321_1.png
                gene_name: C6orf170
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 29 percent done.
C5orf34
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.888151e-02	ci left: 2.979669e-01	ci right 3.161456e-01	k: 3070	n:10000
KS ci ratio: 1.322954e-02	ci left: 8.916967e-01	ci right 9.036705e-01	k: 8978	n:10000
C5orf34   10000 perm   2 sec   (6033 perm/sec)   p_kst 8.978000e-01   p_cons 3.070000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000026/C5orf34.4_1965_10000_0.8978_0.307_1.png
                gene_name: C5orf34
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 32 percent done.
C6orf118
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.323001e-01	ci left: 7.533730e-02	ci right 8.610844e-02	k: 806	n:10000
Cons ci ratio: 6.561992e-02	ci left: 2.542921e-01	ci right 2.716462e-01	k: 2629	n:10000
KS ci ratio: 1.367749e-01	ci left: 7.068651e-02	ci right 8.116213e-02	k: 758	n:10000
C6orf118   10000 perm   2 sec   (5975 perm/sec)   p_kst 7.580000e-02   p_cons 2.629000e-01   p_joint 8.060000e-02

Joint ci ratio: 7.333518e-02	ci left: 1.203971e-01	ci right 1.296122e-01	k: 2499	n:20000
Cons ci ratio: 4.447043e-02	ci left: 2.735364e-01	ci right 2.860277e-01	k: 5595	n:20000
KS ci ratio: 9.748302e-02	ci left: 7.114225e-02	ci right 7.848193e-02	k: 1495	n:20000
C6orf118   20000 perm   4 sec   (5340 perm/sec)   p_kst 7.475000e-02   p_cons 2.797500e-01   p_joint 1.249500e-01

Outputting figure to mutsig2_images.part000000000026/C6orf118.4_1446_20000_0.07475_0.27975_0.12495.png
                gene_name: C6orf118
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.075 
        ci_ks_bounds_left: 0.071 
       ci_ks_bounds_right: 0.078 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 35 percent done.
C6orf142
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.623245e-01	ci left: 5.061180e-02	ci right 5.964956e-02	k: 550	n:10000
Cons ci ratio: 1.015396e-01	ci left: 1.230758e-01	ci right 1.363408e-01	k: 1296	n:10000
KS ci ratio: 1.565438e-01	ci left: 5.436451e-02	ci right 6.369444e-02	k: 589	n:10000
C6orf142   10000 perm   2 sec   (5955 perm/sec)   p_kst 5.890000e-02   p_cons 1.296000e-01   p_joint 5.500000e-02

Joint ci ratio: 1.285145e-01	ci left: 4.158670e-02	ci right 4.734668e-02	k: 888	n:20000
Cons ci ratio: 7.257410e-02	ci left: 1.226609e-01	ci right 1.319478e-01	k: 2545	n:20000
KS ci ratio: 1.083722e-01	ci left: 5.806318e-02	ci right 6.476503e-02	k: 1227	n:20000
C6orf142   20000 perm   4 sec   (5340 perm/sec)   p_kst 6.135000e-02   p_cons 1.272500e-01   p_joint 4.440000e-02

Joint ci ratio: 1.028316e-01	ci left: 4.381946e-02	ci right 4.860225e-02	k: 1385	n:30000
Cons ci ratio: 6.258853e-02	ci left: 1.120025e-01	ci right 1.192721e-01	k: 3468	n:30000
KS ci ratio: 8.965876e-02	ci left: 5.720815e-02	ci right 6.261080e-02	k: 1796	n:30000
C6orf142   30000 perm   6 sec   (5117 perm/sec)   p_kst 5.986667e-02   p_cons 1.156000e-01   p_joint 4.616667e-02

Joint ci ratio: 5.767643e-02	ci left: 1.005312e-01	ci right 1.065265e-01	k: 4140	n:40000
Cons ci ratio: 5.171452e-02	ci left: 1.223424e-01	ci right 1.288621e-01	k: 5023	n:40000
KS ci ratio: 7.771608e-02	ci left: 5.747128e-02	ci right 6.214288e-02	k: 2391	n:40000
C6orf142   40000 perm   8 sec   (4939 perm/sec)   p_kst 5.977500e-02   p_cons 1.255750e-01   p_joint 1.035000e-01

Outputting figure to mutsig2_images.part000000000026/C6orf142.4_1429_40000_0.059775_0.12557_0.1035.png
                gene_name: C6orf142
               theta_stop: 0.078 
                    nperm: 40000 
                     p_ks: 0.060 
        ci_ks_bounds_left: 0.057 
       ci_ks_bounds_right: 0.062 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 39 percent done.
C6orf15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.861344e-01	ci left: 8.233934e-03	ci right 1.225906e-02	k: 101	n:10000
Cons ci ratio: 5.585987e-01	ci left: 3.541199e-03	ci right 6.359123e-03	k: 48	n:10000
KS ci ratio: 4.314654e-02	ci left: 4.423104e-01	ci right 4.619175e-01	k: 4521	n:10000
C6orf15   10000 perm   2 sec   (6138 perm/sec)   p_kst 4.521000e-01   p_cons 4.800000e-03   p_joint 1.010000e-02

Joint ci ratio: 1.332927e-01	ci left: 3.868094e-02	ci right 4.425337e-02	k: 828	n:20000
Cons ci ratio: 4.055288e-01	ci left: 3.709812e-03	ci right 5.638552e-03	k: 92	n:20000
KS ci ratio: 3.061051e-02	ci left: 4.435871e-01	ci right 4.574273e-01	k: 9010	n:20000
C6orf15   20000 perm   4 sec   (5444 perm/sec)   p_kst 4.505000e-01   p_cons 4.600000e-03   p_joint 4.140000e-02

Joint ci ratio: 1.252178e-01	ci left: 2.964928e-02	ci right 3.364210e-02	k: 948	n:30000
Cons ci ratio: 3.225177e-01	ci left: 4.110775e-03	ci right 5.720741e-03	k: 146	n:30000
KS ci ratio: 2.499745e-02	ci left: 4.447916e-01	ci right 4.560846e-01	k: 13513	n:30000
C6orf15   30000 perm   6 sec   (5180 perm/sec)   p_kst 4.504333e-01   p_cons 4.866667e-03   p_joint 3.160000e-02

Joint ci ratio: 1.291134e-01	ci left: 2.106890e-02	ci right 2.400098e-02	k: 900	n:40000
Cons ci ratio: 2.793097e-01	ci left: 4.216083e-03	ci right 5.607289e-03	k: 195	n:40000
KS ci ratio: 2.166113e-02	ci left: 4.452658e-01	ci right 4.550415e-01	k: 18006	n:40000
C6orf15   40000 perm   8 sec   (5018 perm/sec)   p_kst 4.501500e-01   p_cons 4.875000e-03   p_joint 2.250000e-02

Joint ci ratio: 1.087667e-01	ci left: 2.394117e-02	ci right 2.671432e-02	k: 1265	n:50000
Cons ci ratio: 2.488043e-01	ci left: 4.325586e-03	ci right 5.572957e-03	k: 246	n:50000
KS ci ratio: 1.934045e-02	ci left: 4.466514e-01	ci right 4.553943e-01	k: 22551	n:50000
C6orf15   50000 perm   10 sec   (4898 perm/sec)   p_kst 4.510200e-01   p_cons 4.920000e-03   p_joint 2.530000e-02

Joint ci ratio: 1.192753e-01	ci left: 1.662762e-02	ci right 1.875273e-02	k: 1060	n:60000
Cons ci ratio: 2.238855e-01	ci left: 4.514274e-03	ci right 5.667729e-03	k: 304	n:60000
KS ci ratio: 1.766091e-02	ci left: 4.468794e-01	ci right 4.548587e-01	k: 27052	n:60000
C6orf15   60000 perm   13 sec   (4791 perm/sec)   p_kst 4.508667e-01   p_cons 5.066667e-03   p_joint 1.766667e-02

Joint ci ratio: 1.120907e-01	ci left: 1.620808e-02	ci right 1.814653e-02	k: 1201	n:70000
Cons ci ratio: 2.052110e-01	ci left: 4.653535e-03	ci right 5.730965e-03	k: 362	n:70000
KS ci ratio: 1.672130e-02	ci left: 4.361184e-01	ci right 4.434866e-01	k: 30786	n:70000
C6orf15   70000 perm   15 sec   (4702 perm/sec)   p_kst 4.398000e-01   p_cons 5.171429e-03   p_joint 1.715714e-02

Joint ci ratio: 1.184732e-01	ci left: 1.269961e-02	ci right 1.431095e-02	k: 1079	n:80000
Cons ci ratio: 1.921572e-01	ci left: 4.677662e-03	ci right 5.683736e-03	k: 413	n:80000
KS ci ratio: 1.562316e-02	ci left: 4.369309e-01	ci right 4.438234e-01	k: 35230	n:80000
C6orf15   80000 perm   17 sec   (4625 perm/sec)   p_kst 4.403750e-01   p_cons 5.162500e-03   p_joint 1.348750e-02

Joint ci ratio: 9.777980e-02	ci left: 1.668589e-02	ci right 1.841208e-02	k: 1578	n:90000
Cons ci ratio: 1.702563e-01	ci left: 5.356874e-03	ci right 6.364265e-03	k: 526	n:90000
KS ci ratio: 1.472463e-02	ci left: 4.372974e-01	ci right 4.437953e-01	k: 39649	n:90000
C6orf15   90000 perm   20 sec   (4549 perm/sec)   p_kst 4.405444e-01   p_cons 5.844444e-03   p_joint 1.753333e-02

Joint ci ratio: 1.023380e-01	ci left: 1.371947e-02	ci right 1.520889e-02	k: 1445	n:100000
Cons ci ratio: 1.622956e-01	ci left: 5.329133e-03	ci right 6.279875e-03	k: 579	n:100000
KS ci ratio: 1.403424e-02	ci left: 4.351716e-01	ci right 4.413320e-01	k: 43825	n:100000
C6orf15   100000 perm   22 sec   (4468 perm/sec)   p_kst 4.382500e-01   p_cons 5.790000e-03   p_joint 1.445000e-02

Joint ci ratio: 8.725374e-02	ci left: 1.723140e-02	ci right 1.881234e-02	k: 1981	n:110000
Cons ci ratio: 1.548650e-01	ci left: 5.342295e-03	ci right 6.247697e-03	k: 636	n:110000
KS ci ratio: 1.343105e-02	ci left: 4.334846e-01	ci right 4.393551e-01	k: 48006	n:110000
C6orf15   110000 perm   25 sec   (4390 perm/sec)   p_kst 4.364182e-01   p_cons 5.781818e-03   p_joint 1.800909e-02

Joint ci ratio: 8.839217e-02	ci left: 1.541174e-02	ci right 1.684511e-02	k: 1934	n:120000
Cons ci ratio: 1.489101e-01	ci left: 5.313965e-03	ci right 6.176851e-03	k: 688	n:120000
KS ci ratio: 1.285038e-02	ci left: 4.339495e-01	ci right 4.395702e-01	k: 52411	n:120000
C6orf15   120000 perm   28 sec   (4317 perm/sec)   p_kst 4.367583e-01   p_cons 5.733333e-03   p_joint 1.611667e-02

Joint ci ratio: 9.216933e-02	ci left: 1.309016e-02	ci right 1.436243e-02	k: 1783	n:130000
Cons ci ratio: 1.434959e-01	ci left: 5.297976e-03	ci right 6.124307e-03	k: 741	n:130000
KS ci ratio: 1.234888e-02	ci left: 4.339554e-01	ci right 4.393552e-01	k: 56765	n:130000
C6orf15   130000 perm   31 sec   (4251 perm/sec)   p_kst 4.366538e-01   p_cons 5.700000e-03   p_joint 1.371538e-02

Joint ci ratio: 9.424243e-02	ci left: 1.163151e-02	ci right 1.278883e-02	k: 1708	n:140000
Cons ci ratio: 1.391614e-01	ci left: 5.243384e-03	ci right 6.034446e-03	k: 788	n:140000
KS ci ratio: 1.189926e-02	ci left: 4.340712e-01	ci right 4.392743e-01	k: 61134	n:140000
C6orf15   140000 perm   34 sec   (4179 perm/sec)   p_kst 4.366714e-01   p_cons 5.628571e-03   p_joint 1.220000e-02

Joint ci ratio: 8.227871e-02	ci left: 1.429295e-02	ci right 1.552590e-02	k: 2235	n:150000
Cons ci ratio: 1.343913e-01	ci left: 5.260826e-03	ci right 6.025140e-03	k: 845	n:150000
KS ci ratio: 1.149357e-02	ci left: 4.342546e-01	ci right 4.392812e-01	k: 65515	n:150000
C6orf15   150000 perm   36 sec   (4117 perm/sec)   p_kst 4.367667e-01   p_cons 5.633333e-03   p_joint 1.490000e-02

Joint ci ratio: 8.342181e-02	ci left: 1.304430e-02	ci right 1.418593e-02	k: 2177	n:160000
Cons ci ratio: 1.302982e-01	ci left: 5.258351e-03	ci right 5.997237e-03	k: 899	n:160000
KS ci ratio: 1.111232e-02	ci left: 4.350548e-01	ci right 4.399225e-01	k: 69998	n:160000
C6orf15   160000 perm   40 sec   (4048 perm/sec)   p_kst 4.374875e-01   p_cons 5.618750e-03   p_joint 1.360625e-02

Joint ci ratio: 8.594844e-02	ci left: 1.156840e-02	ci right 1.261305e-02	k: 2054	n:170000
Cons ci ratio: 1.262917e-01	ci left: 5.279267e-03	ci right 5.996574e-03	k: 957	n:170000
KS ci ratio: 1.078078e-02	ci left: 4.351165e-01	ci right 4.398386e-01	k: 74371	n:170000
C6orf15   170000 perm   43 sec   (3986 perm/sec)   p_kst 4.374765e-01   p_cons 5.629412e-03   p_joint 1.208235e-02

Joint ci ratio: 8.593537e-02	ci left: 1.093643e-02	ci right 1.192385e-02	k: 2056	n:180000
Cons ci ratio: 1.228159e-01	ci left: 5.282011e-03	ci right 5.978501e-03	k: 1012	n:180000
KS ci ratio: 1.047264e-02	ci left: 4.353897e-01	ci right 4.399789e-01	k: 78783	n:180000
C6orf15   180000 perm   46 sec   (3929 perm/sec)   p_kst 4.376833e-01   p_cons 5.622222e-03   p_joint 1.142222e-02

Joint ci ratio: 7.426316e-02	ci left: 1.391561e-02	ci right 1.499402e-02	k: 2745	n:190000
Cons ci ratio: 1.196121e-01	ci left: 5.284708e-03	ci right 5.962089e-03	k: 1067	n:190000
KS ci ratio: 1.018100e-02	ci left: 4.360462e-01	ci right 4.405135e-01	k: 83273	n:190000
C6orf15   190000 perm   49 sec   (3875 perm/sec)   p_kst 4.382789e-01   p_cons 5.615789e-03   p_joint 1.444737e-02

Joint ci ratio: 6.486187e-02	ci left: 1.735293e-02	ci right 1.852110e-02	k: 3586	n:200000
Cons ci ratio: 1.164383e-01	ci left: 5.306767e-03	ci right 5.967686e-03	k: 1126	n:200000
KS ci ratio: 9.924099e-03	ci left: 4.360589e-01	ci right 4.404129e-01	k: 87647	n:200000
C6orf15   200000 perm   53 sec   (3806 perm/sec)   p_kst 4.382350e-01   p_cons 5.630000e-03   p_joint 1.793000e-02

Joint ci ratio: 6.573411e-02	ci left: 1.610469e-02	ci right 1.720395e-02	k: 3496	n:210000
Cons ci ratio: 1.139887e-01	ci left: 5.280669e-03	ci right 5.923570e-03	k: 1175	n:210000
KS ci ratio: 9.690213e-03	ci left: 4.358432e-01	ci right 4.400919e-01	k: 91973	n:210000
C6orf15   210000 perm   56 sec   (3753 perm/sec)   p_kst 4.379667e-01   p_cons 5.595238e-03   p_joint 1.664762e-02

Joint ci ratio: 6.439751e-02	ci left: 1.602995e-02	ci right 1.710103e-02	k: 3643	n:220000
Cons ci ratio: 1.120560e-01	ci left: 5.221724e-03	ci right 5.845958e-03	k: 1216	n:220000
KS ci ratio: 9.469404e-03	ci left: 4.357891e-01	ci right 4.399398e-01	k: 96330	n:220000
C6orf15   220000 perm   59 sec   (3701 perm/sec)   p_kst 4.378636e-01   p_cons 5.527273e-03   p_joint 1.655909e-02

Joint ci ratio: 6.436726e-02	ci left: 1.535849e-02	ci right 1.638420e-02	k: 3649	n:230000
Cons ci ratio: 1.095202e-01	ci left: 5.235654e-03	ci right 5.846474e-03	k: 1273	n:230000
KS ci ratio: 9.256900e-03	ci left: 4.360666e-01	ci right 4.401263e-01	k: 100762	n:230000
C6orf15   230000 perm   63 sec   (3650 perm/sec)   p_kst 4.380957e-01   p_cons 5.534783e-03   p_joint 1.586522e-02

Joint ci ratio: 6.676934e-02	ci left: 1.368536e-02	ci right 1.463476e-02	k: 3397	n:240000
Cons ci ratio: 1.075152e-01	ci left: 5.212069e-03	ci right 5.808302e-03	k: 1321	n:240000
KS ci ratio: 9.064450e-03	ci left: 4.359763e-01	ci right 4.399502e-01	k: 105111	n:240000
C6orf15   240000 perm   67 sec   (3604 perm/sec)   p_kst 4.379625e-01   p_cons 5.504167e-03   p_joint 1.415417e-02

Joint ci ratio: 6.820657e-02	ci left: 1.259502e-02	ci right 1.348832e-02	k: 3259	n:250000
Cons ci ratio: 1.054618e-01	ci left: 5.206046e-03	ci right 5.789509e-03	k: 1373	n:250000
KS ci ratio: 8.885906e-03	ci left: 4.357620e-01	ci right 4.396554e-01	k: 109427	n:250000
C6orf15   250000 perm   70 sec   (3555 perm/sec)   p_kst 4.377080e-01   p_cons 5.492000e-03   p_joint 1.303600e-02

Joint ci ratio: 6.680622e-02	ci left: 1.263241e-02	ci right 1.350926e-02	k: 3397	n:260000
Cons ci ratio: 1.032671e-01	ci left: 5.226816e-03	ci right 5.799676e-03	k: 1432	n:260000
KS ci ratio: 8.717238e-03	ci left: 4.355804e-01	ci right 4.393979e-01	k: 113747	n:260000
C6orf15   260000 perm   74 sec   (3507 perm/sec)   p_kst 4.374885e-01   p_cons 5.507692e-03   p_joint 1.306538e-02

Joint ci ratio: 6.580055e-02	ci left: 1.254697e-02	ci right 1.340427e-02	k: 3502	n:270000
Cons ci ratio: 1.013749e-01	ci left: 5.228112e-03	ci right 5.789990e-03	k: 1486	n:270000
KS ci ratio: 8.551125e-03	ci left: 4.357979e-01	ci right 4.395441e-01	k: 118171	n:270000
C6orf15   270000 perm   78 sec   (3461 perm/sec)   p_kst 4.376704e-01   p_cons 5.503704e-03   p_joint 1.297037e-02

Joint ci ratio: 6.525240e-02	ci left: 1.230959e-02	ci right 1.314340e-02	k: 3562	n:280000
Cons ci ratio: 9.977860e-02	ci left: 5.208507e-03	ci right 5.758947e-03	k: 1534	n:280000
KS ci ratio: 8.391785e-03	ci left: 4.361397e-01	ci right 4.398187e-01	k: 122634	n:280000
C6orf15   280000 perm   82 sec   (3417 perm/sec)   p_kst 4.379786e-01   p_cons 5.478571e-03   p_joint 1.272143e-02

Outputting figure to mutsig2_images.part000000000026/C6orf15.4_986_280000_0.43798_0.0054786_0.012721.png
                gene_name: C6orf15
               theta_stop: 0.100 
                    nperm: 280000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.0055 
      ci_cons_bounds_left: 0.0052 
     ci_cons_bounds_right: 0.0058 
                  p_joint: 0.013 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.013 

Current progress: 42 percent done.
C5orf4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.719572e-02	ci left: 3.103647e-01	ci right 3.287406e-01	k: 3195	n:10000
Cons ci ratio: 2.699424e-02	ci left: 6.690435e-01	ci right 6.874525e-01	k: 6783	n:10000
KS ci ratio: 8.837333e-02	ci left: 1.570859e-01	ci right 1.717101e-01	k: 1643	n:10000
C5orf4   10000 perm   2 sec   (6308 perm/sec)   p_kst 1.643000e-01   p_cons 6.783000e-01   p_joint 3.195000e-01

Outputting figure to mutsig2_images.part000000000026/C5orf4.3_1034_10000_0.1643_0.6783_0.3195.png
                gene_name: C5orf4
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 45 percent done.
C6orf191
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.081055e-02	ci left: 4.699653e-01	ci right 4.896465e-01	k: 4798	n:10000
Cons ci ratio: 1.073223e-01	ci left: 1.113483e-01	ci right 1.240753e-01	k: 1176	n:10000
KS ci ratio: 5.142700e-02	ci left: 3.579408e-01	ci right 3.769365e-01	k: 3674	n:10000
C6orf191   10000 perm   2 sec   (6635 perm/sec)   p_kst 3.674000e-01   p_cons 1.176000e-01   p_joint 4.798000e-01

Joint ci ratio: 3.461893e-02	ci left: 3.838297e-01	ci right 3.974021e-01	k: 7812	n:20000
Cons ci ratio: 7.702532e-02	ci left: 1.102166e-01	ci right 1.190958e-01	k: 2292	n:20000
KS ci ratio: 3.658820e-02	ci left: 3.579245e-01	ci right 3.713149e-01	k: 7292	n:20000
C6orf191   20000 perm   3 sec   (5871 perm/sec)   p_kst 3.646000e-01   p_cons 1.146000e-01   p_joint 3.906000e-01

Outputting figure to mutsig2_images.part000000000026/C6orf191.3_407_20000_0.3646_0.1146_0.3906.png
                gene_name: C6orf191
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 48 percent done.
C6orf204
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.749659e-02	ci left: 8.264586e-01	ci right 8.411464e-01	k: 8339	n:10000
KS ci ratio: 3.020604e-02	ci left: 6.178376e-01	ci right 6.368881e-01	k: 6274	n:10000
C6orf204   10000 perm   2 sec   (5731 perm/sec)   p_kst 6.274000e-01   p_cons 8.339000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000026/C6orf204.3_2610_10000_0.6274_0.8339_1.png
                gene_name: C6orf204
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 52 percent done.
C6orf25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.842833e-02	ci left: 6.458907e-01	ci right 6.646188e-01	k: 6553	n:10000
Cons ci ratio: 5.877102e-02	ci left: 2.987602e-01	ci right 3.169519e-01	k: 3078	n:10000
KS ci ratio: 1.637888e-02	ci left: 8.442763e-01	ci right 8.583184e-01	k: 8514	n:10000
C6orf25   10000 perm   2 sec   (6638 perm/sec)   p_kst 8.514000e-01   p_cons 3.078000e-01   p_joint 6.553000e-01

Outputting figure to mutsig2_images.part000000000026/C6orf25.3_797_10000_0.8514_0.3078_0.6553.png
                gene_name: C6orf25
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.66 

Current progress: 55 percent done.
C6orf58
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.342919e-02	ci left: 5.691511e-01	ci right 5.886029e-01	k: 5789	n:10000
KS ci ratio: 1.208994e-02	ci left: 9.075108e-01	ci right 9.186472e-01	k: 9132	n:10000
C6orf58   10000 perm   2 sec   (5292 perm/sec)   p_kst 9.132000e-01   p_cons 5.789000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000026/C6orf58.3_1017_10000_0.9132_0.5789_1.png
                gene_name: C6orf58
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 58 percent done.
C6orf70
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.309433e-02	ci left: 4.429091e-01	ci right 4.625185e-01	k: 4527	n:10000
Cons ci ratio: 1.537586e-02	ci left: 8.598813e-01	ci right 8.733044e-01	k: 8667	n:10000
KS ci ratio: 6.567074e-02	ci left: 2.539954e-01	ci right 2.713431e-01	k: 2626	n:10000
C6orf70   10000 perm   2 sec   (6191 perm/sec)   p_kst 2.626000e-01   p_cons 8.667000e-01   p_joint 4.527000e-01

Outputting figure to mutsig2_images.part000000000026/C6orf70.3_2109_10000_0.2626_0.8667_0.4527.png
                gene_name: C6orf70
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 61 percent done.
C5orf49
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.307184e-03	ci left: 9.529432e-01	ci right 9.609878e-01	k: 9571	n:10000
Cons ci ratio: 1.552846e-02	ci left: 8.575336e-01	ci right 8.710534e-01	k: 8644	n:10000
KS ci ratio: 4.947173e-02	ci left: 3.760446e-01	ci right 3.952221e-01	k: 3856	n:10000
C5orf49   10000 perm   1 sec   (7464 perm/sec)   p_kst 3.856000e-01   p_cons 8.644000e-01   p_joint 9.571000e-01

Outputting figure to mutsig2_images.part000000000026/C5orf49.2_456_10000_0.3856_0.8644_0.9571.png
                gene_name: C5orf49
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 65 percent done.
C6orf10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.330145e-02	ci left: 8.906714e-01	ci right 9.026964e-01	k: 8968	n:10000
KS ci ratio: 2.434755e-02	ci left: 7.127015e-01	ci right 7.303692e-01	k: 7216	n:10000
C6orf10   10000 perm   2 sec   (5222 perm/sec)   p_kst 7.216000e-01   p_cons 8.968000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000026/C6orf10.2_1488_10000_0.7216_0.8968_1.png
                gene_name: C6orf10
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
C6orf105
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.094230e-02	ci left: 2.255330e-01	ci right 2.422223e-01	k: 2338	n:10000
Cons ci ratio: 7.781489e-02	ci left: 1.944641e-01	ci right 2.103097e-01	k: 2023	n:10000
KS ci ratio: 1.885682e-02	ci left: 8.043033e-01	ci right 8.197145e-01	k: 8121	n:10000
C6orf105   10000 perm   2 sec   (6144 perm/sec)   p_kst 8.121000e-01   p_cons 2.023000e-01   p_joint 2.338000e-01

Outputting figure to mutsig2_images.part000000000026/C6orf105.2_775_10000_0.8121_0.2023_0.2338.png
                gene_name: C6orf105
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 71 percent done.
C6orf136
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.455778e-01	ci left: 6.265923e-02	ci right 7.259445e-02	k: 675	n:10000
Cons ci ratio: 1.443225e-01	ci left: 6.372193e-02	ci right 7.373108e-02	k: 686	n:10000
KS ci ratio: 1.049610e-01	ci left: 1.159392e-01	ci right 1.288817e-01	k: 1223	n:10000
C6orf136   10000 perm   2 sec   (5807 perm/sec)   p_kst 1.223000e-01   p_cons 6.860000e-02   p_joint 6.750000e-02

Joint ci ratio: 1.213315e-01	ci left: 4.658307e-02	ci right 5.264873e-02	k: 991	n:20000
Cons ci ratio: 1.038086e-01	ci left: 6.308517e-02	ci right 7.004149e-02	k: 1330	n:20000
KS ci ratio: 7.427185e-02	ci left: 1.176911e-01	ci right 1.268191e-01	k: 2444	n:20000
C6orf136   20000 perm   4 sec   (5514 perm/sec)   p_kst 1.222000e-01   p_cons 6.650000e-02   p_joint 4.955000e-02

Joint ci ratio: 1.246762e-01	ci left: 2.990786e-02	ci right 3.391679e-02	k: 956	n:30000
Cons ci ratio: 8.918459e-02	ci left: 5.779553e-02	ci right 6.322330e-02	k: 1814	n:30000
KS ci ratio: 6.077057e-02	ci left: 1.180863e-01	ci right 1.255205e-01	k: 3653	n:30000
C6orf136   30000 perm   6 sec   (5360 perm/sec)   p_kst 1.217667e-01   p_cons 6.046667e-02   p_joint 3.186667e-02

Joint ci ratio: 1.079731e-01	ci left: 3.017504e-02	ci right 3.364335e-02	k: 1275	n:40000
Cons ci ratio: 7.759539e-02	ci left: 5.764309e-02	ci right 6.232104e-02	k: 2398	n:40000
KS ci ratio: 5.243922e-02	ci left: 1.193514e-01	ci right 1.258035e-01	k: 4902	n:40000
C6orf136   40000 perm   8 sec   (5206 perm/sec)   p_kst 1.225500e-01   p_cons 5.995000e-02   p_joint 3.187500e-02

Joint ci ratio: 1.045630e-01	ci left: 2.590864e-02	ci right 2.878659e-02	k: 1366	n:50000
Cons ci ratio: 6.963546e-02	ci left: 5.752082e-02	ci right 6.169049e-02	k: 2979	n:50000
KS ci ratio: 4.687591e-02	ci left: 1.198164e-01	ci right 1.255875e-01	k: 6134	n:50000
C6orf136   50000 perm   10 sec   (5037 perm/sec)   p_kst 1.226800e-01   p_cons 5.958000e-02   p_joint 2.732000e-02

Joint ci ratio: 9.609911e-02	ci left: 2.568512e-02	ci right 2.829424e-02	k: 1618	n:60000
Cons ci ratio: 6.411340e-02	ci left: 5.676653e-02	ci right 6.054297e-02	k: 3518	n:60000
KS ci ratio: 4.296819e-02	ci left: 1.191931e-01	ci right 1.244436e-01	k: 7308	n:60000
C6orf136   60000 perm   12 sec   (4952 perm/sec)   p_kst 1.218000e-01   p_cons 5.863333e-02   p_joint 2.696667e-02

Outputting figure to mutsig2_images.part000000000026/C6orf136.2_1515_60000_0.1218_0.058633_0.026967.png
                gene_name: C6orf136
               theta_stop: 0.096 
                    nperm: 60000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.059 
      ci_cons_bounds_left: 0.057 
     ci_cons_bounds_right: 0.061 
                  p_joint: 0.027 
     ci_joint_bounds_left: 0.026 
    ci_joint_bounds_right: 0.028 

Current progress: 74 percent done.
C6orf153
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.075816e-02	ci left: 7.727630e-01	ci right 7.890731e-01	k: 7810	n:10000
Cons ci ratio: 4.013009e-02	ci left: 4.783575e-01	ci right 4.980493e-01	k: 4882	n:10000
KS ci ratio: 8.082601e-03	ci left: 9.552412e-01	ci right 9.630885e-01	k: 9593	n:10000
C6orf153   10000 perm   1 sec   (6836 perm/sec)   p_kst 9.593000e-01   p_cons 4.882000e-01   p_joint 7.810000e-01

Outputting figure to mutsig2_images.part000000000026/C6orf153.2_808_10000_0.9593_0.4882_0.781.png
                gene_name: C6orf153
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 77 percent done.
C6orf182
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.285669e-02	ci left: 5.775764e-01	ci right 5.969727e-01	k: 5873	n:10000
KS ci ratio: 2.679039e-02	ci left: 6.723675e-01	ci right 6.907266e-01	k: 6816	n:10000
C6orf182   10000 perm   2 sec   (6498 perm/sec)   p_kst 6.816000e-01   p_cons 5.873000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000026/C6orf182.2_1423_10000_0.6816_0.5873_1.png
                gene_name: C6orf182
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
C6orf186
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.783640e-02	ci left: 8.209666e-01	ci right 8.358415e-01	k: 8285	n:10000
Cons ci ratio: 1.621688e-01	ci left: 5.070795e-02	ci right 5.975335e-02	k: 551	n:10000
KS ci ratio: 4.595323e-02	ci left: 4.113971e-01	ci right 4.308489e-01	k: 4211	n:10000
C6orf186   10000 perm   2 sec   (6650 perm/sec)   p_kst 4.211000e-01   p_cons 5.510000e-02   p_joint 8.285000e-01

Joint ci ratio: 3.995125e-02	ci left: 3.184101e-01	ci right 3.314408e-01	k: 6498	n:20000
Cons ci ratio: 1.147282e-01	ci left: 5.197757e-02	ci right 5.835254e-02	k: 1102	n:20000
KS ci ratio: 3.249347e-02	ci left: 4.142941e-01	ci right 4.280289e-01	k: 8423	n:20000
C6orf186   20000 perm   3 sec   (5936 perm/sec)   p_kst 4.211500e-01   p_cons 5.510000e-02   p_joint 3.249000e-01

Joint ci ratio: 3.351162e-02	ci left: 3.079534e-01	ci right 3.184828e-01	k: 9396	n:30000
Cons ci ratio: 9.432627e-02	ci left: 5.186009e-02	ci right 5.702663e-02	k: 1632	n:30000
KS ci ratio: 2.657974e-02	ci left: 4.146724e-01	ci right 4.258764e-01	k: 12608	n:30000
C6orf186   30000 perm   5 sec   (5615 perm/sec)   p_kst 4.202667e-01   p_cons 5.440000e-02   p_joint 3.132000e-01

Outputting figure to mutsig2_images.part000000000026/C6orf186.2_1121_30000_0.42027_0.0544_0.3132.png
                gene_name: C6orf186
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.054 
      ci_cons_bounds_left: 0.052 
     ci_cons_bounds_right: 0.057 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 84 percent done.
C6orf192
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.690201e-02	ci left: 5.202604e-01	ci right 5.399221e-01	k: 5301	n:10000
KS ci ratio: 2.915544e-02	ci left: 6.343234e-01	ci right 6.531928e-01	k: 6438	n:10000
C6orf192   10000 perm   2 sec   (6538 perm/sec)   p_kst 6.438000e-01   p_cons 5.301000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000026/C6orf192.2_1427_10000_0.6438_0.5301_1.png
                gene_name: C6orf192
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
C6orf222
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.941651e-02	ci left: 6.302008e-01	ci right 6.491177e-01	k: 6397	n:10000
KS ci ratio: 2.802049e-02	ci left: 6.524314e-01	ci right 6.710743e-01	k: 6618	n:10000
C6orf222   10000 perm   2 sec   (6302 perm/sec)   p_kst 6.618000e-01   p_cons 6.397000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000026/C6orf222.2_2003_10000_0.6618_0.6397_1.png
                gene_name: C6orf222
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
C6orf72
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.434125e-02	ci left: 8.755155e-01	ci right 8.882611e-01	k: 8820	n:10000
KS ci ratio: 1.945981e-02	ci left: 7.943566e-01	ci right 8.100670e-01	k: 8023	n:10000
C6orf72   10000 perm   1 sec   (6793 perm/sec)   p_kst 8.023000e-01   p_cons 8.820000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000026/C6orf72.2_1025_10000_0.8023_0.882_1.png
                gene_name: C6orf72
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
C7orf10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.493169e-02	ci left: 4.223619e-01	ci right 4.418776e-01	k: 4321	n:10000
Cons ci ratio: 5.612182e-02	ci left: 3.186009e-01	ci right 3.370994e-01	k: 3278	n:10000
KS ci ratio: 5.162669e-02	ci left: 3.561511e-01	ci right 3.751272e-01	k: 3656	n:10000
C7orf10   10000 perm   1 sec   (6838 perm/sec)   p_kst 3.656000e-01   p_cons 3.278000e-01   p_joint 4.321000e-01

Outputting figure to mutsig2_images.part000000000026/C7orf10.2_1365_10000_0.3656_0.3278_0.4321.png
                gene_name: C7orf10
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 97 percent done.
C7orf16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.875699e-02	ci left: 2.367933e-01	ci right 2.537553e-01	k: 2452	n:10000
Cons ci ratio: 8.827696e-02	ci left: 1.573805e-01	ci right 1.720154e-01	k: 1646	n:10000
KS ci ratio: 4.821140e-02	ci left: 3.882876e-01	ci right 4.075719e-01	k: 3979	n:10000
C7orf16   10000 perm   1 sec   (7188 perm/sec)   p_kst 3.979000e-01   p_cons 1.646000e-01   p_joint 2.452000e-01

Outputting figure to mutsig2_images.part000000000026/C7orf16.2_484_10000_0.3979_0.1646_0.2452.png
                gene_name: C7orf16
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000026
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 26 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1423>
Subject: Job 8003927: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1423>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000027> was used as the working directory.
Started at Sun Nov 11 15:04:20 2012
Results reported at Sun Nov 11 15:11:12 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000027.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000027.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 27  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000027.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    522.72 sec.
    Max Memory :      4809 MB
    Max Swap   :      7111 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
27
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 27
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 27: processing genes 2353 - 2443
Calculating significance of each gene.
Using projection method.
2353	C7orf25	1
2354	C7orf26	7.981906e-01
2355	C7orf27	9.523253e-01
2356	C7orf28A	6.005894e-01
2357	C7orf28B	1
2358	C7orf29	1
2359	C7orf30	1
2360	C7orf31	5.378718e-01
2361	C7orf33	3.019645e-02
2362	C7orf34	1
2363	C7orf36	3.529629e-01
2364	C7orf41	1
2365	C7orf42	3.648986e-01
2366	C7orf43	1
2367	C7orf44	1
2368	C7orf45	2.222293e-01
2369	C7orf46	1
2370	C7orf47	2.169992e-01
2371	C7orf49	1
2372	C7orf50	2.450902e-01
2373	C7orf51	7.650891e-01
2374	C7orf52	3.640271e-01
2375	C7orf53	1
2376	C7orf55	1
2377	C7orf57	1
2378	C7orf58	5.186464e-01
2379	C7orf59	1
2380	C7orf60	1
2381	C7orf61	1
2382	C7orf63	4.272987e-01
2383	C7orf64	5.835112e-01
2384	C7orf65	1
2385	C7orf66	1.683409e-02
2386	C7orf68	1
2387	C7orf69	1
2388	C7orf70	3.286426e-01
2389	C8A	8.538654e-01
2390	C8B	8.059182e-01
2391	C8G	1
2392	C8orf22	3.748036e-04
2393	C8orf31	2.850900e-01
2394	C8orf33	5.414467e-01
2395	C8orf34	1.288202e-04
2396	C8orf37	6.079095e-01
2397	C8orf38	3.998552e-01
2398	C8orf4	1
2399	C8orf40	1
2400	C8orf41	1
2401	C8orf42	1
2402	C8orf44	1.556839e-01
2403	C8orf45	6.350715e-01
2404	C8orf46	1
2405	C8orf47	4.267956e-01
2406	C8orf58	7.938129e-01
2407	C8orf59	1
2408	C8orf73	1
2409	C8orf74	6.148260e-01
2410	C8orf76	8.943861e-02
2411	C8orf79	7.213468e-01
2412	C8orf80	8.332012e-01
2413	C8orf84	1.121967e-01
2414	C8orf85	2.609615e-01
2415	C8orf86	1
2416	C9	3.508134e-01
2417	C9orf100	5.992111e-01
2418	C9orf102	2.088990e-01
2419	C9orf103	1
2420	C9orf106	1
2421	C9orf11	4.372543e-01
2422	C9orf114	1
2423	C9orf116	4.057172e-01
2424	C9orf117	1
2425	C9orf119	2.114227e-01
2426	C9orf123	1
2427	C9orf125	4.951368e-01
2428	C9orf128	1
2429	C9orf129	1
2430	C9orf131	8.169389e-01
2431	C9orf135	1
2432	C9orf139	1
2433	C9orf140	1
2434	C9orf142	1
2435	C9orf150	1
2436	C9orf152	1
2437	C9orf153	2.064539e-01
2438	C9orf156	1
2439	C9orf16	1
2440	C9orf163	1
2441	C9orf167	2.345064e-01
2442	C9orf170	1.155550e-01
2443	C9orf171	2.464769e-01
Done

Running MutSig 2:
Scatter job 27: processing genes 2353 - 2443
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
C8orf34
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.916815e-02	ci left: 6.341223e-01	ci right 6.529940e-01	k: 6436	n:10000
Cons ci ratio: 4.398338e-02	ci left: 4.328329e-01	ci right 4.524006e-01	k: 4426	n:10000
KS ci ratio: 3.959588e-02	ci left: 4.850534e-01	ci right 5.047496e-01	k: 4949	n:10000
C8orf34   10000 perm   2 sec   (4990 perm/sec)   p_kst 4.949000e-01   p_cons 4.426000e-01   p_joint 6.436000e-01

Outputting figure to mutsig2_images.part000000000027/C8orf34.9_1336_10000_0.4949_0.4426_0.6436.png
                gene_name: C8orf34
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 4 percent done.
C7orf58
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.746352e-02	ci left: 2.438103e-01	ci right 2.609341e-01	k: 2523	n:10000
Cons ci ratio: 1.207044e-01	ci left: 8.961344e-02	ci right 1.012235e-01	k: 953	n:10000
KS ci ratio: 6.503433e-03	ci left: 9.699492e-01	ci right 9.763711e-01	k: 9733	n:10000
C7orf58   10000 perm   2 sec   (4214 perm/sec)   p_kst 9.733000e-01   p_cons 9.530000e-02   p_joint 2.523000e-01

Joint ci ratio: 3.836252e-02	ci left: 3.363694e-01	ci right 3.495763e-01	k: 6859	n:20000
Cons ci ratio: 8.993368e-02	ci left: 8.283542e-02	ci right 9.068521e-02	k: 1734	n:20000
KS ci ratio: 4.703943e-03	ci left: 9.696709e-01	ci right 9.742906e-01	k: 19441	n:20000
C7orf58   20000 perm   5 sec   (3848 perm/sec)   p_kst 9.720500e-01   p_cons 8.670000e-02   p_joint 3.429500e-01

Outputting figure to mutsig2_images.part000000000027/C7orf58.7_3215_20000_0.97205_0.0867_0.34295.png
                gene_name: C7orf58
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.087 
      ci_cons_bounds_left: 0.083 
     ci_cons_bounds_right: 0.091 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 7 percent done.
C8A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.478455e-03	ci left: 9.701607e-01	ci right 9.765595e-01	k: 9735	n:10000
KS ci ratio: 7.102432e-03	ci left: 9.646769e-01	ci right 9.716469e-01	k: 9683	n:10000
C8A   10000 perm   2 sec   (5756 perm/sec)   p_kst 9.683000e-01   p_cons 9.735000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000027/C8A.6_1799_10000_0.9683_0.9735_1.png
                gene_name: C8A
               theta_stop: 0.0071 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 11 percent done.
C7orf63
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.686016e-02	ci left: 4.019315e-01	ci right 4.213200e-01	k: 4116	n:10000
Cons ci ratio: 9.768831e-03	ci left: 9.368238e-01	ci right 9.461169e-01	k: 9416	n:10000
KS ci ratio: 6.118695e-02	ci left: 2.820102e-01	ci right 2.999117e-01	k: 2909	n:10000
C7orf63   10000 perm   2 sec   (4666 perm/sec)   p_kst 2.909000e-01   p_cons 9.416000e-01   p_joint 4.116000e-01

Outputting figure to mutsig2_images.part000000000027/C7orf63.5_2918_10000_0.2909_0.9416_0.4116.png
                gene_name: C7orf63
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 14 percent done.
C8orf76
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.906704e-02	ci left: 3.799258e-01	ci right 3.991386e-01	k: 3895	n:10000
KS ci ratio: 2.298170e-02	ci left: 7.355281e-01	ci right 7.527294e-01	k: 7442	n:10000
C8orf76   10000 perm   2 sec   (5751 perm/sec)   p_kst 7.442000e-01   p_cons 3.895000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000027/C8orf76.5_1167_10000_0.7442_0.3895_1.png
                gene_name: C8orf76
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 18 percent done.
C8B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.334826e-02	ci left: 1.428581e-01	ci right 1.569465e-01	k: 1498	n:10000
Cons ci ratio: 2.903464e-01	ci left: 1.529963e-02	ci right 2.058652e-02	k: 178	n:10000
KS ci ratio: 1.384084e-02	ci left: 8.828843e-01	ci right 8.952880e-01	k: 8892	n:10000
C8B   10000 perm   2 sec   (5398 perm/sec)   p_kst 8.892000e-01   p_cons 1.780000e-02   p_joint 1.498000e-01

Joint ci ratio: 8.166503e-02	ci left: 9.906579e-02	ci right 1.075499e-01	k: 2065	n:20000
Cons ci ratio: 1.978447e-01	ci left: 1.734330e-02	ci right 2.119826e-02	k: 384	n:20000
KS ci ratio: 9.768373e-03	ci left: 8.851241e-01	ci right 8.938623e-01	k: 17791	n:20000
C8B   20000 perm   4 sec   (4873 perm/sec)   p_kst 8.895500e-01   p_cons 1.920000e-02   p_joint 1.032500e-01

Joint ci ratio: 5.091841e-02	ci left: 1.607497e-01	ci right 1.691819e-01	k: 4948	n:30000
Cons ci ratio: 1.581536e-01	ci left: 1.847776e-02	ci right 2.168280e-02	k: 601	n:30000
KS ci ratio: 8.104112e-03	ci left: 8.827213e-01	ci right 8.899371e-01	k: 26591	n:30000
C8B   30000 perm   7 sec   (4600 perm/sec)   p_kst 8.863667e-01   p_cons 2.003333e-02   p_joint 1.649333e-01

Joint ci ratio: 4.596944e-02	ci left: 1.502774e-01	ci right 1.573730e-01	k: 6152	n:40000
Cons ci ratio: 1.401777e-01	ci left: 1.782941e-02	ci right 2.054103e-02	k: 766	n:40000
KS ci ratio: 7.035345e-03	ci left: 8.827185e-01	ci right 8.889754e-01	k: 35435	n:40000
C8B   40000 perm   9 sec   (4477 perm/sec)   p_kst 8.858750e-01   p_cons 1.915000e-02   p_joint 1.538000e-01

Joint ci ratio: 3.771375e-02	ci left: 1.743185e-01	ci right 1.810390e-01	k: 8883	n:50000
Cons ci ratio: 1.247668e-01	ci left: 1.815085e-02	ci right 2.058541e-02	k: 967	n:50000
KS ci ratio: 6.296109e-03	ci left: 8.829393e-01	ci right 8.885358e-01	k: 44288	n:50000
C8B   50000 perm   11 sec   (4355 perm/sec)   p_kst 8.857600e-01   p_cons 1.934000e-02   p_joint 1.776600e-01

Joint ci ratio: 3.830589e-02	ci left: 1.457461e-01	ci right 1.514546e-01	k: 8915	n:60000
Cons ci ratio: 1.153528e-01	ci left: 1.779301e-02	ci right 1.998721e-02	k: 1132	n:60000
KS ci ratio: 5.728353e-03	ci left: 8.838675e-01	ci right 8.889617e-01	k: 53186	n:60000
C8B   60000 perm   14 sec   (4265 perm/sec)   p_kst 8.864333e-01   p_cons 1.886667e-02   p_joint 1.485833e-01

Joint ci ratio: 3.819842e-02	ci left: 1.282679e-01	ci right 1.332771e-01	k: 9153	n:70000
Cons ci ratio: 1.036372e-01	ci left: 1.898960e-02	ci right 2.107903e-02	k: 1401	n:70000
KS ci ratio: 5.300133e-03	ci left: 8.841846e-01	ci right 8.888975e-01	k: 62059	n:70000
C8B   70000 perm   17 sec   (4182 perm/sec)   p_kst 8.865571e-01   p_cons 2.001429e-02   p_joint 1.307571e-01

Joint ci ratio: 3.709539e-02	ci left: 1.202107e-01	ci right 1.247667e-01	k: 9798	n:80000
Cons ci ratio: 9.643184e-02	ci left: 1.926072e-02	ci right 2.122429e-02	k: 1618	n:80000
KS ci ratio: 4.955819e-03	ci left: 8.844203e-01	ci right 8.888266e-01	k: 70931	n:80000
C8B   80000 perm   20 sec   (4071 perm/sec)   p_kst 8.866375e-01   p_cons 2.022500e-02   p_joint 1.224750e-01

Outputting figure to mutsig2_images.part000000000027/C8B.4_1824_80000_0.88664_0.020225_0.12248.png
                gene_name: C8B
               theta_stop: 0.096 
                    nperm: 80000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.020 
      ci_cons_bounds_left: 0.019 
     ci_cons_bounds_right: 0.021 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 21 percent done.
C8orf22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.873093e-02	ci left: 6.410619e-01	ci right 6.598504e-01	k: 6505	n:10000
Cons ci ratio: 3.206323e-02	ci left: 5.894169e-01	ci right 6.087254e-01	k: 5991	n:10000
KS ci ratio: 4.433266e-02	ci left: 4.289432e-01	ci right 4.484926e-01	k: 4387	n:10000
C8orf22   10000 perm   2 sec   (5706 perm/sec)   p_kst 4.387000e-01   p_cons 5.991000e-01   p_joint 6.505000e-01

Outputting figure to mutsig2_images.part000000000027/C8orf22.4_262_10000_0.4387_0.5991_0.6505.png
                gene_name: C8orf22
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 25 percent done.
C9orf102
Processing conservation and coverage...
Processing mutations... 
Skipping 2 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.264082e-03	ci left: 9.861030e-01	ci right 9.904055e-01	k: 9884	n:10000
Cons ci ratio: 7.947409e-03	ci left: 9.566005e-01	ci right 9.643283e-01	k: 9606	n:10000
KS ci ratio: 4.409049e-02	ci left: 4.316360e-01	ci right 4.511982e-01	k: 4414	n:10000
C9orf102   10000 perm   2 sec   (5710 perm/sec)   p_kst 4.414000e-01   p_cons 9.606000e-01   p_joint 9.884000e-01

Outputting figure to mutsig2_images.part000000000027/C9orf102.2_2195_10000_0.4414_0.9606_0.9884.png
                gene_name: C9orf102
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 29 percent done.
C7orf33
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.775496e-02	ci left: 5.088528e-01	ci right 5.285363e-01	k: 5187	n:10000
Cons ci ratio: 6.755301e-02	ci left: 2.433161e-01	ci right 2.604287e-01	k: 2518	n:10000
KS ci ratio: 1.738916e-02	ci left: 8.281881e-01	ci right 8.428159e-01	k: 8356	n:10000
C7orf33   10000 perm   1 sec   (6693 perm/sec)   p_kst 8.356000e-01   p_cons 2.518000e-01   p_joint 5.187000e-01

Outputting figure to mutsig2_images.part000000000027/C7orf33.3_546_10000_0.8356_0.2518_0.5187.png
                gene_name: C7orf33
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 32 percent done.
C7orf66
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.517473e-02	ci left: 5.440928e-01	ci right 5.636758e-01	k: 5539	n:10000
Cons ci ratio: 3.708012e-02	ci left: 5.178584e-01	ci right 5.375255e-01	k: 5277	n:10000
KS ci ratio: 4.552242e-02	ci left: 4.159818e-01	ci right 4.354615e-01	k: 4257	n:10000
C7orf66   10000 perm   2 sec   (6400 perm/sec)   p_kst 4.257000e-01   p_cons 5.277000e-01   p_joint 5.539000e-01

Outputting figure to mutsig2_images.part000000000027/C7orf66.3_356_10000_0.4257_0.5277_0.5539.png
                gene_name: C7orf66
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 36 percent done.
C8orf84
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.346716e-02	ci left: 2.133931e-01	ci right 2.297694e-01	k: 2215	n:10000
Cons ci ratio: 1.536584e-01	ci left: 5.638760e-02	ci right 6.587006e-02	k: 610	n:10000
KS ci ratio: 2.701279e-02	ci left: 6.687414e-01	ci right 6.871549e-01	k: 6780	n:10000
C8orf84   10000 perm   2 sec   (6196 perm/sec)   p_kst 6.780000e-01   p_cons 6.100000e-02   p_joint 2.215000e-01

Joint ci ratio: 6.234290e-02	ci left: 1.598798e-01	ci right 1.702178e-01	k: 3300	n:20000
Cons ci ratio: 1.059567e-01	ci left: 6.064653e-02	ci right 6.748089e-02	k: 1280	n:20000
KS ci ratio: 1.906441e-02	ci left: 6.723283e-01	ci right 6.853197e-01	k: 13577	n:20000
C8orf84   20000 perm   4 sec   (5418 perm/sec)   p_kst 6.788500e-01   p_cons 6.400000e-02   p_joint 1.650000e-01

Joint ci ratio: 4.275580e-02	ci left: 2.141655e-01	ci right 2.235557e-01	k: 6565	n:30000
Cons ci ratio: 8.800357e-02	ci left: 5.929696e-02	ci right 6.478823e-02	k: 1860	n:30000
KS ci ratio: 1.565135e-02	ci left: 6.711393e-01	ci right 6.817599e-01	k: 20294	n:30000
C8orf84   30000 perm   6 sec   (5022 perm/sec)   p_kst 6.764667e-01   p_cons 6.200000e-02   p_joint 2.188333e-01

Outputting figure to mutsig2_images.part000000000027/C8orf84.3_815_30000_0.67647_0.062_0.21883.png
                gene_name: C8orf84
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.062 
      ci_cons_bounds_left: 0.059 
     ci_cons_bounds_right: 0.065 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 39 percent done.
C9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.033941e-02	ci left: 4.757596e-01	ci right 4.954488e-01	k: 4856	n:10000
Cons ci ratio: 2.107331e-02	ci left: 7.674962e-01	ci right 7.839429e-01	k: 7758	n:10000
KS ci ratio: 6.392025e-02	ci left: 2.644834e-01	ci right 2.820489e-01	k: 2732	n:10000
C9   10000 perm   2 sec   (5671 perm/sec)   p_kst 2.732000e-01   p_cons 7.758000e-01   p_joint 4.856000e-01

Outputting figure to mutsig2_images.part000000000027/C9.3_1724_10000_0.2732_0.7758_0.4856.png
                gene_name: C9
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 43 percent done.
C9orf131
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.962374e-03	ci left: 9.459616e-01	ci right 9.545737e-01	k: 9504	n:10000
KS ci ratio: 1.945981e-02	ci left: 7.943566e-01	ci right 8.100670e-01	k: 8023	n:10000
C9orf131   10000 perm   2 sec   (5051 perm/sec)   p_kst 8.023000e-01   p_cons 9.504000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000027/C9orf131.3_3264_10000_0.8023_0.9504_1.png
                gene_name: C9orf131
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 46 percent done.
C7orf31
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.852255e-02	ci left: 8.097874e-01	ci right 8.250272e-01	k: 8175	n:10000
Cons ci ratio: 6.193667e-02	ci left: 2.770574e-01	ci right 2.948674e-01	k: 2859	n:10000
KS ci ratio: 1.968030e-02	ci left: 7.907046e-01	ci right 8.065211e-01	k: 7987	n:10000
C7orf31   10000 perm   2 sec   (6092 perm/sec)   p_kst 7.987000e-01   p_cons 2.859000e-01   p_joint 8.175000e-01

Outputting figure to mutsig2_images.part000000000027/C7orf31.2_1809_10000_0.7987_0.2859_0.8175.png
                gene_name: C7orf31
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 50 percent done.
C7orf42
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.287912e-02	ci left: 7.372464e-01	ci right 7.544102e-01	k: 7459	n:10000
Cons ci ratio: 3.274838e-02	ci left: 5.791816e-01	ci right 5.985666e-01	k: 5889	n:10000
KS ci ratio: 6.565379e-02	ci left: 2.540943e-01	ci right 2.714441e-01	k: 2627	n:10000
C7orf42   10000 perm   2 sec   (6620 perm/sec)   p_kst 2.627000e-01   p_cons 5.889000e-01   p_joint 7.459000e-01

Outputting figure to mutsig2_images.part000000000027/C7orf42.2_969_10000_0.2627_0.5889_0.7459.png
                gene_name: C7orf42
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.75 

Current progress: 54 percent done.
C7orf45
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.784894e-02	ci left: 8.207633e-01	ci right 8.356450e-01	k: 8283	n:10000
KS ci ratio: 3.899868e-02	ci left: 4.926508e-01	ci right 5.123478e-01	k: 5025	n:10000
C7orf45   10000 perm   1 sec   (6882 perm/sec)   p_kst 5.025000e-01   p_cons 8.283000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000027/C7orf45.2_747_10000_0.5025_0.8283_1.png
                gene_name: C7orf45
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 57 percent done.
C7orf47
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.481289e-02	ci left: 4.236581e-01	ci right 4.431807e-01	k: 4334	n:10000
Cons ci ratio: 1.058498e-01	ci left: 1.141806e-01	ci right 1.270413e-01	k: 1205	n:10000
KS ci ratio: 5.739775e-03	ci left: 9.761027e-01	ci right 9.818135e-01	k: 9791	n:10000
C7orf47   10000 perm   2 sec   (6226 perm/sec)   p_kst 9.791000e-01   p_cons 1.205000e-01   p_joint 4.334000e-01

Joint ci ratio: 2.618989e-02	ci left: 5.213529e-01	ci right 5.352389e-01	k: 10566	n:20000
Cons ci ratio: 7.590801e-02	ci left: 1.131663e-01	ci right 1.221451e-01	k: 2352	n:20000
KS ci ratio: 4.108234e-03	ci left: 9.764461e-01	ci right 9.805131e-01	k: 19571	n:20000
C7orf47   20000 perm   4 sec   (5308 perm/sec)   p_kst 9.785500e-01   p_cons 1.176000e-01   p_joint 5.283000e-01

Outputting figure to mutsig2_images.part000000000027/C7orf47.2_778_20000_0.97855_0.1176_0.5283.png
                gene_name: C7orf47
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 61 percent done.
C7orf50
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.372124e-02	ci left: 8.846253e-01	ci right 8.969460e-01	k: 8909	n:10000
KS ci ratio: 2.431120e-02	ci left: 7.133072e-01	ci right 7.309632e-01	k: 7222	n:10000
C7orf50   10000 perm   2 sec   (6415 perm/sec)   p_kst 7.222000e-01   p_cons 8.909000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000027/C7orf50.2_601_10000_0.7222_0.8909_1.png
                gene_name: C7orf50
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 64 percent done.
C7orf51
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.603921e-02	ci left: 1.358995e-01	ci right 1.497093e-01	k: 1427	n:10000
Cons ci ratio: 1.661901e-01	ci left: 4.830553e-02	ci right 5.715732e-02	k: 526	n:10000
KS ci ratio: 3.906111e-02	ci left: 4.918509e-01	ci right 5.115481e-01	k: 5017	n:10000
C7orf51   10000 perm   2 sec   (5626 perm/sec)   p_kst 5.017000e-01   p_cons 5.260000e-02   p_joint 1.427000e-01

Joint ci ratio: 6.993803e-02	ci left: 1.309819e-01	ci right 1.405243e-01	k: 2714	n:20000
Cons ci ratio: 1.103482e-01	ci left: 5.606595e-02	ci right 6.266288e-02	k: 1186	n:20000
KS ci ratio: 2.748193e-02	ci left: 4.972955e-01	ci right 5.112032e-01	k: 10085	n:20000
C7orf51   20000 perm   4 sec   (4927 perm/sec)   p_kst 5.042500e-01   p_cons 5.930000e-02   p_joint 1.357000e-01

Joint ci ratio: 3.864669e-02	ci left: 2.504063e-01	ci right 2.603078e-01	k: 7660	n:30000
Cons ci ratio: 8.997877e-02	ci left: 5.681660e-02	ci right 6.220243e-02	k: 1784	n:30000
KS ci ratio: 2.245068e-02	ci left: 4.983254e-01	ci right 5.096738e-01	k: 15120	n:30000
C7orf51   30000 perm   6 sec   (4689 perm/sec)   p_kst 5.040000e-01   p_cons 5.946667e-02   p_joint 2.553333e-01

Outputting figure to mutsig2_images.part000000000027/C7orf51.2_2550_30000_0.504_0.059467_0.25533.png
                gene_name: C7orf51
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.059 
      ci_cons_bounds_left: 0.057 
     ci_cons_bounds_right: 0.062 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 68 percent done.
C7orf52
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.256777e-02	ci left: 4.489967e-01	ci right 4.686273e-01	k: 4588	n:10000
KS ci ratio: 1.146199e-02	ci left: 9.158488e-01	ci right 9.265043e-01	k: 9213	n:10000
C7orf52   10000 perm   2 sec   (6466 perm/sec)   p_kst 9.213000e-01   p_cons 4.588000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000027/C7orf52.2_1122_10000_0.9213_0.4588_1.png
                gene_name: C7orf52
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
C7orf70
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.080951e-02	ci left: 9.242033e-01	ci right 9.343450e-01	k: 9294	n:10000
KS ci ratio: 4.615168e-02	ci left: 4.093044e-01	ci right 4.287428e-01	k: 4190	n:10000
C7orf70   10000 perm   1 sec   (6931 perm/sec)   p_kst 4.190000e-01   p_cons 9.294000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000027/C7orf70.2_784_10000_0.419_0.9294_1.png
                gene_name: C7orf70
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
C8orf44
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.397872e-01	ci left: 6.778282e-02	ci right 7.806763e-02	k: 728	n:10000
Cons ci ratio: 1.342088e-01	ci left: 7.330186e-02	ci right 8.394515e-02	k: 785	n:10000
KS ci ratio: 5.205220e-02	ci left: 3.523733e-01	ci right 3.713072e-01	k: 3618	n:10000
C8orf44   10000 perm   2 sec   (6427 perm/sec)   p_kst 3.618000e-01   p_cons 7.850000e-02   p_joint 7.280000e-02

Joint ci ratio: 7.649875e-02	ci left: 1.115930e-01	ci right 1.205189e-01	k: 2320	n:20000
Cons ci ratio: 8.320037e-02	ci left: 9.572844e-02	ci right 1.040883e-01	k: 1997	n:20000
KS ci ratio: 3.686218e-02	ci left: 3.544886e-01	ci right 3.678518e-01	k: 7223	n:20000
C8orf44   20000 perm   4 sec   (5511 perm/sec)   p_kst 3.611500e-01   p_cons 9.985000e-02   p_joint 1.160000e-01

Outputting figure to mutsig2_images.part000000000027/C8orf44.2_488_20000_0.36115_0.09985_0.116.png
                gene_name: C8orf44
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.100 
      ci_cons_bounds_left: 0.096 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 79 percent done.
C8orf45
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.985179e-02	ci left: 6.233651e-01	ci right 6.423575e-01	k: 6329	n:10000
Cons ci ratio: 7.817824e-02	ci left: 1.929864e-01	ci right 2.087882e-01	k: 2008	n:10000
KS ci ratio: 2.869303e-02	ci left: 6.416654e-01	ci right 6.604465e-01	k: 6511	n:10000
C8orf45   10000 perm   2 sec   (5625 perm/sec)   p_kst 6.511000e-01   p_cons 2.008000e-01   p_joint 6.329000e-01

Outputting figure to mutsig2_images.part000000000027/C8orf45.2_2126_10000_0.6511_0.2008_0.6329.png
                gene_name: C8orf45
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 82 percent done.
C8orf47
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.754004e-02	ci left: 6.601821e-01	ci right 6.787191e-01	k: 6695	n:10000
Cons ci ratio: 1.722442e-02	ci left: 8.308338e-01	ci right 8.453686e-01	k: 8382	n:10000
KS ci ratio: 8.805305e-02	ci left: 1.580679e-01	ci right 1.727275e-01	k: 1653	n:10000
C8orf47   10000 perm   2 sec   (6050 perm/sec)   p_kst 1.653000e-01   p_cons 8.382000e-01   p_joint 6.695000e-01

Outputting figure to mutsig2_images.part000000000027/C8orf47.2_1137_10000_0.1653_0.8382_0.6695.png
                gene_name: C8orf47
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 86 percent done.
C9orf119
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.707361e-02	ci left: 3.997400e-01	ci right 4.191128e-01	k: 4094	n:10000
KS ci ratio: 8.625171e-03	ci left: 9.496057e-01	ci right 9.579274e-01	k: 9539	n:10000
C9orf119   10000 perm   2 sec   (6657 perm/sec)   p_kst 9.539000e-01   p_cons 4.094000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000027/C9orf119.2_728_10000_0.9539_0.4094_1.png
                gene_name: C9orf119
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
C9orf125
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.941142e-02	ci left: 2.941996e-01	ci right 3.123152e-01	k: 3032	n:10000
Cons ci ratio: 5.444600e-02	ci left: 3.320042e-01	ci right 3.506883e-01	k: 3413	n:10000
KS ci ratio: 6.570466e-02	ci left: 2.537975e-01	ci right 2.711410e-01	k: 2624	n:10000
C9orf125   10000 perm   2 sec   (6323 perm/sec)   p_kst 2.624000e-01   p_cons 3.413000e-01   p_joint 3.032000e-01

Outputting figure to mutsig2_images.part000000000027/C9orf125.2_1216_10000_0.2624_0.3413_0.3032.png
                gene_name: C9orf125
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 93 percent done.
C9orf128
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.408143e-03	ci left: 9.618396e-01	ci right 9.690860e-01	k: 9656	n:10000
KS ci ratio: 4.936750e-02	ci left: 3.770397e-01	ci right 3.962264e-01	k: 3866	n:10000
C9orf128   10000 perm   2 sec   (6359 perm/sec)   p_kst 3.866000e-01   p_cons 9.656000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000027/C9orf128.2_1233_10000_0.3866_0.9656_1.png
                gene_name: C9orf128
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
C9orf171
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.635899e-03	ci left: 9.838246e-01	ci right 9.884858e-01	k: 9863	n:10000
Cons ci ratio: 2.240852e-02	ci left: 7.451322e-01	ci right 7.621198e-01	k: 7537	n:10000
KS ci ratio: 8.154618e-03	ci left: 9.545097e-01	ci right 9.624204e-01	k: 9586	n:10000
C9orf171   10000 perm   2 sec   (6440 perm/sec)   p_kst 9.586000e-01   p_cons 7.537000e-01   p_joint 9.863000e-01

Outputting figure to mutsig2_images.part000000000027/C9orf171.2_991_10000_0.9586_0.7537_0.9863.png
                gene_name: C9orf171
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000027
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 27 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1532>
Subject: Job 8003932: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1532>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000028> was used as the working directory.
Started at Sun Nov 11 15:04:25 2012
Results reported at Sun Nov 11 15:13:45 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000028.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000028.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 28  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000028.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    684.33 sec.
    Max Memory :      4771 MB
    Max Swap   :      7010 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
28
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 28
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 28: processing genes 2444 - 2533
Calculating significance of each gene.
Using projection method.
2444	C9orf172	6.945507e-01
2445	C9orf173	1.314071e-01
2446	C9orf21	1
2447	C9orf23	2.256428e-01
2448	C9orf24	5.606011e-01
2449	C9orf25	1
2450	C9orf3	6.240957e-01
2451	C9orf30	7.222068e-01
2452	C9orf37	1
2453	C9orf4	6.943808e-02
2454	C9orf40	1.030970e-01
2455	C9orf41	7.612921e-01
2456	C9orf43	1
2457	C9orf46	6.191536e-02
2458	C9orf47	1
2459	C9orf5	1
2460	C9orf50	1
2461	C9orf6	1
2462	C9orf64	6.802261e-01
2463	C9orf66	1
2464	C9orf68	3.537907e-01
2465	C9orf69	1
2466	C9orf7	1
2467	C9orf71	3.585698e-01
2468	C9orf72	5.184557e-01
2469	C9orf78	2.626114e-01
2470	C9orf79	1
2471	C9orf80	1
2472	C9orf82	7.397385e-01
2473	C9orf84	9.254542e-01
2474	C9orf85	1.791263e-01
2475	C9orf86	6.123141e-01
2476	C9orf89	1
2477	C9orf9	2.632899e-01
2478	C9orf91	6.410784e-01
2479	C9orf93	9.840451e-01
2480	C9orf95	3.765109e-01
2481	C9orf96	1.989941e-01
2482	C9orf98	7.534506e-01
2483	CA1	1
2484	CA10	1.557672e-01
2485	CA11	2.320953e-02
2486	CA12	4.401927e-01
2487	CA13	5.849266e-01
2488	CA14	8.005057e-01
2489	CA2	1
2490	CA3	1.650615e-02
2491	CA4	4.566177e-01
2492	CA5A	2.748118e-01
2493	CA5B	3.419050e-01
2494	CA6	3.315366e-01
2495	CA7	8.184992e-02
2496	CA8	1
2497	CA9	7.208028e-01
2498	CAB39	5.575712e-01
2499	CAB39L	7.074471e-01
2500	CABC1	8.472584e-01
2501	CABIN1	9.936902e-01
2502	CABLES1	8.150480e-01
2503	CABLES2	1
2504	CABP1	6.186366e-01
2505	CABP2	1.892271e-01
2506	CABP4	3.003826e-01
2507	CABP5	5.560179e-01
2508	CABP7	1
2509	CABYR	8.706977e-01
2510	CACHD1	9.737218e-01
2511	CACNA1A	3.879118e-01
2512	CACNA1B	5.596023e-01
2513	CACNA1C	9.996329e-01
2514	CACNA1D	9.999565e-01
2515	CACNA1E	9.925113e-01
2516	CACNA1F	1.091064e-01
2517	CACNA1G	9.983935e-01
2518	CACNA1H	9.931400e-01
2519	CACNA1I	1.418727e-01
2520	CACNA1S	1
2521	CACNA2D1	1.036510e-02
2522	CACNA2D2	7.600533e-01
2523	CACNA2D3	7.894793e-01
2524	CACNA2D4	6.366254e-01
2525	CACNB1	1
2526	CACNB2	1.312204e-01
2527	CACNB3	4.348452e-01
2528	CACNB4	7.424536e-01
2529	CACNG1	1
2530	CACNG2	5.482867e-01
2531	CACNG3	3.332977e-02
2532	CACNG4	3.588791e-01
2533	CACNG5	1
Done

Running MutSig 2:
Scatter job 28: processing genes 2444 - 2533
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CACNA1E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.264382e-02	ci left: 7.411889e-01	ci right 7.582654e-01	k: 7498	n:10000
Cons ci ratio: 4.579340e-02	ci left: 4.130914e-01	ci right 4.325536e-01	k: 4228	n:10000
KS ci ratio: 3.550329e-02	ci left: 5.394848e-01	ci right 5.590865e-01	k: 5493	n:10000
CACNA1E   10000 perm   3 sec   (2865 perm/sec)   p_kst 5.493000e-01   p_cons 4.228000e-01   p_joint 7.498000e-01

Outputting figure to mutsig2_images.part000000000028/CACNA1E.19_7001_10000_0.5493_0.4228_0.7498.png
                gene_name: CACNA1E
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 2 percent done.
C9orf79
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.237722e-02	ci left: 9.036042e-01	ci right 9.149561e-01	k: 9094	n:10000
Cons ci ratio: 1.994303e-02	ci left: 7.863438e-01	ci right 8.022844e-01	k: 7944	n:10000
KS ci ratio: 2.181702e-02	ci left: 7.550454e-01	ci right 7.718009e-01	k: 7635	n:10000
C9orf79   10000 perm   3 sec   (3598 perm/sec)   p_kst 7.635000e-01   p_cons 7.944000e-01   p_joint 9.094000e-01

Outputting figure to mutsig2_images.part000000000028/C9orf79.16_4354_10000_0.7635_0.7944_0.9094.png
                gene_name: C9orf79
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 5 percent done.
CACNA1C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.097653e-02	ci left: 3.620179e-01	ci right 3.810570e-01	k: 3715	n:10000
Cons ci ratio: 2.479027e-02	ci left: 7.053344e-01	ci right 7.231406e-01	k: 7143	n:10000
KS ci ratio: 7.642078e-02	ci left: 2.002780e-01	ci right 2.162923e-01	k: 2082	n:10000
CACNA1C   10000 perm   3 sec   (3159 perm/sec)   p_kst 2.082000e-01   p_cons 7.143000e-01   p_joint 3.715000e-01

Outputting figure to mutsig2_images.part000000000028/CACNA1C.15_7314_10000_0.2082_0.7143_0.3715.png
                gene_name: CACNA1C
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 7 percent done.
CACNA1I
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.009590e-01	ci left: 1.243474e-01	ci right 1.376684e-01	k: 1309	n:10000
Cons ci ratio: 1.252558e-01	ci left: 8.358655e-02	ci right 9.485408e-02	k: 891	n:10000
KS ci ratio: 6.836926e-02	ci left: 2.388684e-01	ci right 2.558790e-01	k: 2473	n:10000
CACNA1I   10000 perm   3 sec   (3405 perm/sec)   p_kst 2.473000e-01   p_cons 8.910000e-02   p_joint 1.309000e-01

Joint ci ratio: 7.142143e-02	ci left: 1.262051e-01	ci right 1.356025e-01	k: 2617	n:20000
Cons ci ratio: 8.829953e-02	ci left: 8.572561e-02	ci right 9.369414e-02	k: 1793	n:20000
KS ci ratio: 4.854685e-02	ci left: 2.398451e-01	ci right 2.518288e-01	k: 4916	n:20000
CACNA1I   20000 perm   6 sec   (3088 perm/sec)   p_kst 2.458000e-01   p_cons 8.965000e-02   p_joint 1.308500e-01

Outputting figure to mutsig2_images.part000000000028/CACNA1I.11_6820_20000_0.2458_0.08965_0.13085.png
                gene_name: CACNA1I
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.090 
      ci_cons_bounds_left: 0.086 
     ci_cons_bounds_right: 0.094 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 10 percent done.
CACNA1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.098191e-02	ci left: 2.253355e-01	ci right 2.420199e-01	k: 2336	n:10000
Cons ci ratio: 1.379586e-01	ci left: 6.952474e-02	ci right 7.992463e-02	k: 746	n:10000
KS ci ratio: 4.279990e-02	ci left: 4.463020e-01	ci right 4.659236e-01	k: 4561	n:10000
CACNA1A   10000 perm   3 sec   (2934 perm/sec)   p_kst 4.561000e-01   p_cons 7.460000e-02   p_joint 2.336000e-01

Joint ci ratio: 5.922121e-02	ci left: 1.743514e-01	ci right 1.850419e-01	k: 3593	n:20000
Cons ci ratio: 9.984730e-02	ci left: 6.796658e-02	ci right 7.515858e-02	k: 1430	n:20000
KS ci ratio: 3.077176e-02	ci left: 4.409912e-01	ci right 4.548240e-01	k: 8958	n:20000
CACNA1A   20000 perm   7 sec   (2753 perm/sec)   p_kst 4.479000e-01   p_cons 7.150000e-02   p_joint 1.796500e-01

Outputting figure to mutsig2_images.part000000000028/CACNA1A.10_7823_20000_0.4479_0.0715_0.17965.png
                gene_name: CACNA1A
               theta_stop: 0.100 
                    nperm: 20000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.071 
      ci_cons_bounds_left: 0.068 
     ci_cons_bounds_right: 0.075 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.19 

Current progress: 12 percent done.
CACNA1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.117628e-02	ci left: 6.028698e-01	ci right 6.220646e-01	k: 6125	n:10000
Cons ci ratio: 6.659877e-02	ci left: 2.486549e-01	ci right 2.658867e-01	k: 2572	n:10000
KS ci ratio: 9.298919e-03	ci left: 9.422194e-01	ci right 9.511181e-01	k: 9468	n:10000
CACNA1B   10000 perm   3 sec   (3050 perm/sec)   p_kst 9.468000e-01   p_cons 2.572000e-01   p_joint 6.125000e-01

Outputting figure to mutsig2_images.part000000000028/CACNA1B.10_7204_10000_0.9468_0.2572_0.6125.png
                gene_name: CACNA1B
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 14 percent done.
CACNA1F
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.331431e-02	ci left: 2.682448e-01	ci right 2.858852e-01	k: 2770	n:10000
Cons ci ratio: 5.018909e-02	ci left: 3.692789e-01	ci right 3.883917e-01	k: 3788	n:10000
KS ci ratio: 6.608005e-02	ci left: 2.516216e-01	ci right 2.689183e-01	k: 2602	n:10000
CACNA1F   10000 perm   3 sec   (3541 perm/sec)   p_kst 2.602000e-01   p_cons 3.788000e-01   p_joint 2.770000e-01

Outputting figure to mutsig2_images.part000000000028/CACNA1F.10_6126_10000_0.2602_0.3788_0.277.png
                gene_name: CACNA1F
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 17 percent done.
CACNA2D1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.428612e-02	ci left: 8.763339e-01	ci right 8.890423e-01	k: 8828	n:10000
Cons ci ratio: 4.139542e-02	ci left: 4.628739e-01	ci right 4.825420e-01	k: 4727	n:10000
KS ci ratio: 1.860936e-02	ci left: 8.083654e-01	ci right 8.236501e-01	k: 8161	n:10000
CACNA2D1   10000 perm   3 sec   (3982 perm/sec)   p_kst 8.161000e-01   p_cons 4.727000e-01   p_joint 8.828000e-01

Outputting figure to mutsig2_images.part000000000028/CACNA2D1.10_3432_10000_0.8161_0.4727_0.8828.png
                gene_name: CACNA2D1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 19 percent done.
CACNA2D4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.381275e-02	ci left: 8.832939e-01	ci right 8.956782e-01	k: 8896	n:10000
KS ci ratio: 1.996134e-02	ci left: 7.860396e-01	ci right 8.019887e-01	k: 7941	n:10000
CACNA2D4   10000 perm   2 sec   (4074 perm/sec)   p_kst 7.941000e-01   p_cons 8.896000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000028/CACNA2D4.9_3566_10000_0.7941_0.8896_1.png
                gene_name: CACNA2D4
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 21 percent done.
CACNA1G
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.174650e-01	ci left: 9.428457e-02	ci right 1.061495e-01	k: 1001	n:10000
Cons ci ratio: 4.520736e-02	ci left: 4.193710e-01	ci right 4.388703e-01	k: 4291	n:10000
KS ci ratio: 1.397872e-01	ci left: 6.778282e-02	ci right 7.806763e-02	k: 728	n:10000
CACNA1G   10000 perm   3 sec   (3390 perm/sec)   p_kst 7.280000e-02   p_cons 4.291000e-01   p_joint 1.001000e-01

Joint ci ratio: 5.985149e-02	ci left: 1.712880e-01	ci right 1.819062e-01	k: 3531	n:20000
Cons ci ratio: 3.128710e-02	ci left: 4.328052e-01	ci right 4.466123e-01	k: 8794	n:20000
KS ci ratio: 9.902981e-02	ci left: 6.904119e-02	ci right 7.628364e-02	k: 1452	n:20000
CACNA1G   20000 perm   6 sec   (3098 perm/sec)   p_kst 7.260000e-02   p_cons 4.397000e-01   p_joint 1.765500e-01

Outputting figure to mutsig2_images.part000000000028/CACNA1G.7_7553_20000_0.0726_0.4397_0.17655.png
                gene_name: CACNA1G
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.073 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.076 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 24 percent done.
CA10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.048147e-01	ci left: 1.162323e-01	ci right 1.291883e-01	k: 1226	n:10000
Cons ci ratio: 4.037980e-02	ci left: 4.752601e-01	ci right 4.949486e-01	k: 4851	n:10000
KS ci ratio: 1.604833e-01	ci left: 5.176584e-02	ci right 6.089478e-02	k: 562	n:10000
CA10   10000 perm   2 sec   (5363 perm/sec)   p_kst 5.620000e-02   p_cons 4.851000e-01   p_joint 1.226000e-01

Joint ci ratio: 9.129435e-02	ci left: 8.053403e-02	ci right 8.828730e-02	k: 1687	n:20000
Cons ci ratio: 2.868683e-02	ci left: 4.758525e-01	ci right 4.897525e-01	k: 9656	n:20000
KS ci ratio: 1.165856e-01	ci left: 5.037280e-02	ci right 5.665781e-02	k: 1069	n:20000
CA10   20000 perm   4 sec   (4864 perm/sec)   p_kst 5.345000e-02   p_cons 4.828000e-01   p_joint 8.435000e-02

Joint ci ratio: 6.925006e-02	ci left: 9.314841e-02	ci right 9.986330e-02	k: 2894	n:30000
Cons ci ratio: 2.341550e-02	ci left: 4.772972e-01	ci right 4.886394e-01	k: 14489	n:30000
KS ci ratio: 9.735842e-02	ci left: 4.876538e-02	ci right 5.378864e-02	k: 1537	n:30000
CA10   30000 perm   6 sec   (4654 perm/sec)   p_kst 5.123333e-02   p_cons 4.829667e-01   p_joint 9.646667e-02

Outputting figure to mutsig2_images.part000000000028/CA10.6_1023_30000_0.051233_0.48297_0.096467.png
                gene_name: CA10
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.051 
        ci_ks_bounds_left: 0.049 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.096 
     ci_joint_bounds_left: 0.093 
    ci_joint_bounds_right: 0.100 

Current progress: 26 percent done.
CACNA1D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.482738e-02	ci left: 5.490022e-01	ci right 5.685635e-01	k: 5588	n:10000
Cons ci ratio: 6.379177e-02	ci left: 2.652752e-01	ci right 2.828566e-01	k: 2740	n:10000
KS ci ratio: 3.128144e-02	ci left: 6.012631e-01	ci right 6.204723e-01	k: 6109	n:10000
CACNA1D   10000 perm   3 sec   (3391 perm/sec)   p_kst 6.109000e-01   p_cons 2.740000e-01   p_joint 5.588000e-01

Outputting figure to mutsig2_images.part000000000028/CACNA1D.6_6850_10000_0.6109_0.274_0.5588.png
                gene_name: CACNA1D
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 29 percent done.
CACNA1S
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.146053e-02	ci left: 7.610165e-01	ci right 7.776263e-01	k: 7694	n:10000
Cons ci ratio: 5.226699e-02	ci left: 3.504847e-01	ci right 3.693970e-01	k: 3599	n:10000
KS ci ratio: 2.525849e-02	ci left: 6.975666e-01	ci right 7.155129e-01	k: 7066	n:10000
CACNA1S   10000 perm   3 sec   (3801 perm/sec)   p_kst 7.066000e-01   p_cons 3.599000e-01   p_joint 7.694000e-01

Outputting figure to mutsig2_images.part000000000028/CACNA1S.6_5798_10000_0.7066_0.3599_0.7694.png
                gene_name: CACNA1S
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 31 percent done.
C9orf93
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.081046e-01	ci left: 1.098838e-01	ci right 1.225407e-01	k: 1161	n:10000
Cons ci ratio: 2.430514e-02	ci left: 7.134081e-01	ci right 7.310622e-01	k: 7223	n:10000
KS ci ratio: 1.767052e-01	ci left: 4.274287e-02	ci right 5.112360e-02	k: 468	n:10000
C9orf93   10000 perm   2 sec   (4366 perm/sec)   p_kst 4.680000e-02   p_cons 7.223000e-01   p_joint 1.161000e-01

Joint ci ratio: 7.750332e-02	ci left: 1.089878e-01	ci right 1.178249e-01	k: 2267	n:20000
Cons ci ratio: 1.710530e-02	ci left: 7.179489e-01	ci right 7.303859e-01	k: 14484	n:20000
KS ci ratio: 1.219798e-01	ci left: 4.609757e-02	ci right 5.213438e-02	k: 981	n:20000
C9orf93   20000 perm   5 sec   (3958 perm/sec)   p_kst 4.905000e-02   p_cons 7.242000e-01   p_joint 1.133500e-01

Joint ci ratio: 7.436574e-02	ci left: 8.160570e-02	ci right 8.794166e-02	k: 2542	n:30000
Cons ci ratio: 1.400497e-02	ci left: 7.179984e-01	ci right 7.281583e-01	k: 21693	n:30000
KS ci ratio: 1.043401e-01	ci left: 4.258416e-02	ci right 4.730447e-02	k: 1347	n:30000
C9orf93   30000 perm   8 sec   (3793 perm/sec)   p_kst 4.490000e-02   p_cons 7.231000e-01   p_joint 8.473333e-02

Joint ci ratio: 5.366264e-02	ci left: 1.145326e-01	ci right 1.208730e-01	k: 4707	n:40000
Cons ci ratio: 1.216277e-02	ci left: 7.175559e-01	ci right 7.263618e-01	k: 28879	n:40000
KS ci ratio: 8.946190e-02	ci left: 4.374741e-02	ci right 4.786886e-02	k: 1831	n:40000
C9orf93   40000 perm   11 sec   (3695 perm/sec)   p_kst 4.577500e-02   p_cons 7.219750e-01   p_joint 1.176750e-01

Outputting figure to mutsig2_images.part000000000028/C9orf93.5_4081_40000_0.045775_0.72198_0.11768.png
                gene_name: C9orf93
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.046 
        ci_ks_bounds_left: 0.044 
       ci_ks_bounds_right: 0.048 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 33 percent done.
C9orf96
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.664969e-02	ci left: 8.399972e-01	ci right 8.542000e-01	k: 8472	n:10000
Cons ci ratio: 4.240530e-02	ci left: 4.508931e-01	ci right 4.705298e-01	k: 4607	n:10000
KS ci ratio: 2.446874e-02	ci left: 7.106829e-01	ci right 7.283891e-01	k: 7196	n:10000
C9orf96   10000 perm   2 sec   (5602 perm/sec)   p_kst 7.196000e-01   p_cons 4.607000e-01   p_joint 8.472000e-01

Outputting figure to mutsig2_images.part000000000028/C9orf96.5_2115_10000_0.7196_0.4607_0.8472.png
                gene_name: C9orf96
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 36 percent done.
CA11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.966014e-02	ci left: 3.742535e-01	ci right 3.934142e-01	k: 3838	n:10000
Cons ci ratio: 2.824610e-02	ci left: 6.488086e-01	ci right 6.674992e-01	k: 6582	n:10000
KS ci ratio: 9.331165e-02	ci left: 1.429561e-01	ci right 1.570484e-01	k: 1499	n:10000
CA11   10000 perm   2 sec   (6290 perm/sec)   p_kst 1.499000e-01   p_cons 6.582000e-01   p_joint 3.838000e-01

Outputting figure to mutsig2_images.part000000000028/CA11.5_1023_10000_0.1499_0.6582_0.3838.png
                gene_name: CA11
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 38 percent done.
CABIN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.573329e-02	ci left: 5.362797e-01	ci right 5.558935e-01	k: 5461	n:10000
Cons ci ratio: 8.125263e-02	ci left: 1.810727e-01	ci right 1.965090e-01	k: 1887	n:10000
KS ci ratio: 3.928043e-02	ci left: 4.890517e-01	ci right 5.087489e-01	k: 4989	n:10000
CABIN1   10000 perm   3 sec   (3321 perm/sec)   p_kst 4.989000e-01   p_cons 1.887000e-01   p_joint 5.461000e-01

Outputting figure to mutsig2_images.part000000000028/CABIN1.5_6807_10000_0.4989_0.1887_0.5461.png
                gene_name: CABIN1
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 40 percent done.
CACNA1H
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.867250e-02	ci left: 4.968503e-01	ci right 5.165458e-01	k: 5067	n:10000
Cons ci ratio: 3.049091e-02	ci left: 6.134166e-01	ci right 6.325117e-01	k: 6230	n:10000
KS ci ratio: 5.140488e-02	ci left: 3.581397e-01	ci right 3.771375e-01	k: 3676	n:10000
CACNA1H   10000 perm   3 sec   (3250 perm/sec)   p_kst 3.676000e-01   p_cons 6.230000e-01   p_joint 5.067000e-01

Outputting figure to mutsig2_images.part000000000028/CACNA1H.5_7198_10000_0.3676_0.623_0.5067.png
                gene_name: CACNA1H
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 43 percent done.
CACNB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.737663e-02	ci left: 3.966523e-01	ci right 4.160023e-01	k: 4063	n:10000
Cons ci ratio: 9.930804e-02	ci left: 1.280657e-01	ci right 1.415478e-01	k: 1347	n:10000
KS ci ratio: 4.025877e-02	ci left: 4.767588e-01	ci right 4.964490e-01	k: 4866	n:10000
CACNB2   10000 perm   2 sec   (5110 perm/sec)   p_kst 4.866000e-01   p_cons 1.347000e-01   p_joint 4.063000e-01

Outputting figure to mutsig2_images.part000000000028/CACNB2.5_2349_10000_0.4866_0.1347_0.4063.png
                gene_name: CACNB2
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 45 percent done.
CA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.888568e-01	ci left: 3.738868e-02	ci right 4.528136e-02	k: 412	n:10000
Cons ci ratio: 1.660239e-01	ci left: 4.840157e-02	ci right 5.726121e-02	k: 527	n:10000
KS ci ratio: 2.638133e-01	ci left: 1.874721e-02	ci right 2.453613e-02	k: 215	n:10000
CA3   10000 perm   2 sec   (5359 perm/sec)   p_kst 2.150000e-02   p_cons 5.270000e-02   p_joint 4.120000e-02

Joint ci ratio: 1.257988e-01	ci left: 4.338038e-02	ci right 4.925242e-02	k: 925	n:20000
Cons ci ratio: 1.158440e-01	ci left: 5.100488e-02	ci right 5.732553e-02	k: 1082	n:20000
KS ci ratio: 1.858900e-01	ci left: 1.972547e-02	ci right 2.381521e-02	k: 434	n:20000
CA3   20000 perm   4 sec   (5030 perm/sec)   p_kst 2.170000e-02   p_cons 5.410000e-02   p_joint 4.625000e-02

Joint ci ratio: 1.861452e-01	ci left: 1.320961e-02	ci right 1.595225e-02	k: 436	n:30000
Cons ci ratio: 9.396171e-02	ci left: 5.225117e-02	ci right 5.743546e-02	k: 1644	n:30000
KS ci ratio: 1.526791e-01	ci left: 1.985641e-02	ci right 2.317049e-02	k: 644	n:30000
CA3   30000 perm   6 sec   (4873 perm/sec)   p_kst 2.146667e-02   p_cons 5.480000e-02   p_joint 1.453333e-02

Joint ci ratio: 1.359039e-01	ci left: 1.898872e-02	ci right 2.178152e-02	k: 814	n:40000
Cons ci ratio: 8.072014e-02	ci left: 5.342326e-02	ci right 5.794151e-02	k: 2226	n:40000
KS ci ratio: 1.305284e-01	ci left: 2.060901e-02	ci right 2.351095e-02	k: 881	n:40000
CA3   40000 perm   8 sec   (4747 perm/sec)   p_kst 2.202500e-02   p_cons 5.565000e-02   p_joint 2.035000e-02

Joint ci ratio: 1.322026e-01	ci left: 1.613652e-02	ci right 1.844001e-02	k: 863	n:50000
Cons ci ratio: 7.294721e-02	ci left: 5.260481e-02	ci right 5.660710e-02	k: 2729	n:50000
KS ci ratio: 1.174309e-01	ci left: 2.051841e-02	ci right 2.309753e-02	k: 1089	n:50000
CA3   50000 perm   11 sec   (4635 perm/sec)   p_kst 2.178000e-02   p_cons 5.458000e-02   p_joint 1.726000e-02

Joint ci ratio: 1.388123e-01	ci left: 1.220548e-02	ci right 1.404206e-02	k: 786	n:60000
Cons ci ratio: 6.688352e-02	ci left: 5.233601e-02	ci right 5.597393e-02	k: 3248	n:60000
KS ci ratio: 1.069906e-01	ci left: 2.071130e-02	ci right 2.306860e-02	k: 1312	n:60000
CA3   60000 perm   13 sec   (4540 perm/sec)   p_kst 2.186667e-02   p_cons 5.413333e-02   p_joint 1.310000e-02

Joint ci ratio: 1.129543e-01	ci left: 1.595806e-02	ci right 1.788229e-02	k: 1183	n:70000
Cons ci ratio: 6.176299e-02	ci left: 5.273119e-02	ci right 5.610587e-02	k: 3808	n:70000
KS ci ratio: 9.855648e-02	ci left: 2.100972e-02	ci right 2.320157e-02	k: 1546	n:70000
CA3   70000 perm   16 sec   (4444 perm/sec)   p_kst 2.208571e-02   p_cons 5.440000e-02   p_joint 1.690000e-02

Joint ci ratio: 1.140576e-01	ci left: 1.371948e-02	ci right 1.539099e-02	k: 1163	n:80000
Cons ci ratio: 5.776100e-02	ci left: 5.286294e-02	ci right 5.601947e-02	k: 4354	n:80000
KS ci ratio: 9.200514e-02	ci left: 2.116572e-02	ci right 2.321914e-02	k: 1774	n:80000
CA3   80000 perm   18 sec   (4356 perm/sec)   p_kst 2.217500e-02   p_cons 5.442500e-02   p_joint 1.453750e-02

Joint ci ratio: 1.288589e-01	ci left: 9.521550e-03	ci right 1.084364e-02	k: 915	n:90000
Cons ci ratio: 5.425517e-02	ci left: 5.333289e-02	ci right 5.631811e-02	k: 4933	n:90000
KS ci ratio: 8.638730e-02	ci left: 2.139957e-02	ci right 2.334250e-02	k: 2012	n:90000
CA3   90000 perm   21 sec   (4261 perm/sec)   p_kst 2.235556e-02   p_cons 5.481111e-02   p_joint 1.016667e-02

Joint ci ratio: 1.238407e-01	ci left: 9.305312e-03	ci right 1.054336e-02	k: 991	n:100000
Cons ci ratio: 5.135328e-02	ci left: 5.364431e-02	ci right 5.648157e-02	k: 5505	n:100000
KS ci ratio: 8.140984e-02	ci left: 2.173670e-02	ci right 2.359113e-02	k: 2265	n:100000
CA3   100000 perm   24 sec   (4176 perm/sec)   p_kst 2.265000e-02   p_cons 5.505000e-02   p_joint 9.910000e-03

Joint ci ratio: 1.299849e-01	ci left: 7.666725e-03	ci right 8.741266e-03	k: 901	n:110000
Cons ci ratio: 4.906469e-02	ci left: 5.349820e-02	ci right 5.619805e-02	k: 6032	n:110000
KS ci ratio: 7.801608e-02	ci left: 2.156032e-02	ci right 2.331953e-02	k: 2467	n:110000
CA3   110000 perm   27 sec   (4102 perm/sec)   p_kst 2.242727e-02   p_cons 5.483636e-02   p_joint 8.190909e-03

Joint ci ratio: 1.309100e-01	ci left: 6.930920e-03	ci right 7.909777e-03	k: 889	n:120000
Cons ci ratio: 4.694741e-02	ci left: 5.361781e-02	ci right 5.620375e-02	k: 6588	n:120000
KS ci ratio: 7.448788e-02	ci left: 2.171739e-02	ci right 2.340579e-02	k: 2706	n:120000
CA3   120000 perm   30 sec   (4026 perm/sec)   p_kst 2.255000e-02   p_cons 5.490000e-02   p_joint 7.408333e-03

Joint ci ratio: 8.924720e-02	ci left: 1.397003e-02	ci right 1.528252e-02	k: 1900	n:130000
Cons ci ratio: 4.511260e-02	ci left: 5.365264e-02	ci right 5.613649e-02	k: 7135	n:130000
KS ci ratio: 7.152305e-02	ci left: 2.177623e-02	ci right 2.339901e-02	k: 2935	n:130000
CA3   130000 perm   33 sec   (3958 perm/sec)   p_kst 2.257692e-02   p_cons 5.488462e-02   p_joint 1.461538e-02

Outputting figure to mutsig2_images.part000000000028/CA3.4_811_130000_0.022577_0.054885_0.014615.png
                gene_name: CA3
               theta_stop: 0.089 
                    nperm: 130000 
                     p_ks: 0.023 
        ci_ks_bounds_left: 0.022 
       ci_ks_bounds_right: 0.023 
                   p_cons: 0.055 
      ci_cons_bounds_left: 0.054 
     ci_cons_bounds_right: 0.056 
                  p_joint: 0.015 
     ci_joint_bounds_left: 0.014 
    ci_joint_bounds_right: 0.015 

Current progress: 48 percent done.
CACNG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.748407e-02	ci left: 6.610882e-01	ci right 6.796124e-01	k: 6704	n:10000
Cons ci ratio: 3.505392e-02	ci left: 5.457959e-01	ci right 5.653717e-01	k: 5556	n:10000
KS ci ratio: 3.534585e-02	ci left: 5.416885e-01	ci right 5.612815e-01	k: 5515	n:10000
CACNG3   10000 perm   2 sec   (5645 perm/sec)   p_kst 5.515000e-01   p_cons 5.556000e-01   p_joint 6.704000e-01

Outputting figure to mutsig2_images.part000000000028/CACNG3.4_964_10000_0.5515_0.5556_0.6704.png
                gene_name: CACNG3
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 50 percent done.
C9orf3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.007111e-02	ci left: 7.842146e-01	ci right 8.002148e-01	k: 7923	n:10000
Cons ci ratio: 4.160355e-02	ci left: 4.603775e-01	ci right 4.800399e-01	k: 4702	n:10000
KS ci ratio: 3.066638e-02	ci left: 6.107041e-01	ci right 6.298258e-01	k: 6203	n:10000
C9orf3   10000 perm   2 sec   (5640 perm/sec)   p_kst 6.203000e-01   p_cons 4.702000e-01   p_joint 7.923000e-01

Outputting figure to mutsig2_images.part000000000028/C9orf3.3_2215_10000_0.6203_0.4702_0.7923.png
                gene_name: C9orf3
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 52 percent done.
C9orf4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.511858e-02	ci left: 3.265426e-01	ci right 3.451531e-01	k: 3358	n:10000
Cons ci ratio: 6.864576e-02	ci left: 2.373862e-01	ci right 2.543621e-01	k: 2458	n:10000
KS ci ratio: 5.835992e-02	ci left: 3.017350e-01	ci right 3.199753e-01	k: 3108	n:10000
C9orf4   10000 perm   2 sec   (6336 perm/sec)   p_kst 3.108000e-01   p_cons 2.458000e-01   p_joint 3.358000e-01

Outputting figure to mutsig2_images.part000000000028/C9orf4.3_1055_10000_0.3108_0.2458_0.3358.png
                gene_name: C9orf4
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 55 percent done.
C9orf84
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.364237e-02	ci left: 1.420738e-01	ci right 1.561313e-01	k: 1490	n:10000
Cons ci ratio: 4.163696e-02	ci left: 4.599781e-01	ci right 4.796395e-01	k: 4698	n:10000
KS ci ratio: 1.017651e-01	ci left: 1.225867e-01	ci right 1.358301e-01	k: 1291	n:10000
C9orf84   10000 perm   2 sec   (4523 perm/sec)   p_kst 1.291000e-01   p_cons 4.698000e-01   p_joint 1.490000e-01

Joint ci ratio: 5.836184e-02	ci left: 1.786511e-01	ci right 1.894410e-01	k: 3680	n:20000
Cons ci ratio: 2.798385e-02	ci left: 4.882469e-01	ci right 5.021545e-01	k: 9904	n:20000
KS ci ratio: 7.315137e-02	ci left: 1.209384e-01	ci right 1.301708e-01	k: 2510	n:20000
C9orf84   20000 perm   5 sec   (4042 perm/sec)   p_kst 1.255000e-01   p_cons 4.952000e-01   p_joint 1.840000e-01

Outputting figure to mutsig2_images.part000000000028/C9orf84.3_4572_20000_0.1255_0.4952_0.184.png
                gene_name: C9orf84
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 57 percent done.
CA7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.712419e-02	ci left: 6.669285e-01	ci right 6.853688e-01	k: 6762	n:10000
Cons ci ratio: 6.228728e-02	ci left: 2.747796e-01	ci right 2.925466e-01	k: 2836	n:10000
KS ci ratio: 1.112701e-02	ci left: 9.201785e-01	ci right 9.305721e-01	k: 9255	n:10000
CA7   10000 perm   2 sec   (5939 perm/sec)   p_kst 9.255000e-01   p_cons 2.836000e-01   p_joint 6.762000e-01

Outputting figure to mutsig2_images.part000000000028/CA7.3_823_10000_0.9255_0.2836_0.6762.png
                gene_name: CA7
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 60 percent done.
CACHD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.164979e-02	ci left: 2.789393e-01	ci right 2.967844e-01	k: 2878	n:10000
Cons ci ratio: 3.722914e-02	ci left: 5.158568e-01	ci right 5.355282e-01	k: 5257	n:10000
KS ci ratio: 6.931866e-02	ci left: 2.338293e-01	ci right 2.507211e-01	k: 2422	n:10000
CACHD1   10000 perm   2 sec   (5099 perm/sec)   p_kst 2.422000e-01   p_cons 5.257000e-01   p_joint 2.878000e-01

Outputting figure to mutsig2_images.part000000000028/CACHD1.3_3780_10000_0.2422_0.5257_0.2878.png
                gene_name: CACHD1
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 62 percent done.
CACNA2D2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.377594e-01	ci left: 6.971834e-02	ci right 8.013090e-02	k: 748	n:10000
Cons ci ratio: 4.958674e-02	ci left: 3.749500e-01	ci right 3.941173e-01	k: 3845	n:10000
KS ci ratio: 1.677072e-01	ci left: 4.744132e-02	ci right 5.622208e-02	k: 517	n:10000
CACNA2D2   10000 perm   2 sec   (4773 perm/sec)   p_kst 5.170000e-02   p_cons 3.845000e-01   p_joint 7.480000e-02

Joint ci ratio: 8.292399e-02	ci left: 9.631728e-02	ci right 1.046993e-01	k: 2009	n:20000
Cons ci ratio: 3.656058e-02	ci left: 3.582731e-01	ci right 3.716662e-01	k: 7299	n:20000
KS ci ratio: 1.176937e-01	ci left: 4.944921e-02	ci right 5.568168e-02	k: 1050	n:20000
CACNA2D2   20000 perm   5 sec   (4314 perm/sec)   p_kst 5.250000e-02   p_cons 3.649500e-01   p_joint 1.004500e-01

Joint ci ratio: 6.061013e-02	ci left: 1.186455e-01	ci right 1.260945e-01	k: 3670	n:30000
Cons ci ratio: 2.996134e-02	ci left: 3.578212e-01	ci right 3.687386e-01	k: 10898	n:30000
KS ci ratio: 9.481852e-02	ci left: 5.133870e-02	ci right 5.648146e-02	k: 1616	n:30000
CACNA2D2   30000 perm   7 sec   (4156 perm/sec)   p_kst 5.386667e-02   p_cons 3.632667e-01   p_joint 1.223333e-01

Outputting figure to mutsig2_images.part000000000028/CACNA2D2.3_3615_30000_0.053867_0.36327_0.12233.png
                gene_name: CACNA2D2
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.054 
        ci_ks_bounds_left: 0.051 
       ci_ks_bounds_right: 0.056 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 64 percent done.
CACNA2D3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.131249e-02	ci left: 4.638726e-01	ci right 4.835427e-01	k: 4737	n:10000
Cons ci ratio: 4.233711e-02	ci left: 4.516917e-01	ci right 4.713307e-01	k: 4615	n:10000
KS ci ratio: 7.681687e-02	ci left: 1.986025e-01	ci right 2.145687e-01	k: 2065	n:10000
CACNA2D3   10000 perm   2 sec   (5375 perm/sec)   p_kst 2.065000e-01   p_cons 4.615000e-01   p_joint 4.737000e-01

Outputting figure to mutsig2_images.part000000000028/CACNA2D3.3_3428_10000_0.2065_0.4615_0.4737.png
                gene_name: CACNA2D3
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 67 percent done.
C9orf173
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.353098e-01	ci left: 2.381734e-02	ci right 3.026216e-02	k: 269	n:10000
Cons ci ratio: 1.696151e-01	ci left: 4.638557e-02	ci right 5.507852e-02	k: 506	n:10000
KS ci ratio: 8.935079e-02	ci left: 1.541405e-01	ci right 1.686573e-01	k: 1613	n:10000
C9orf173   10000 perm   2 sec   (6628 perm/sec)   p_kst 1.613000e-01   p_cons 5.060000e-02   p_joint 2.690000e-02

Joint ci ratio: 1.812584e-01	ci left: 2.077592e-02	ci right 2.496439e-02	k: 456	n:20000
Cons ci ratio: 1.179902e-01	ci left: 4.920621e-02	ci right 5.542476e-02	k: 1045	n:20000
KS ci ratio: 6.372376e-02	ci left: 1.540063e-01	ci right 1.641931e-01	k: 3181	n:20000
C9orf173   20000 perm   3 sec   (5722 perm/sec)   p_kst 1.590500e-01   p_cons 5.225000e-02   p_joint 2.280000e-02

Joint ci ratio: 1.383377e-01	ci left: 2.426080e-02	ci right 2.789843e-02	k: 781	n:30000
Cons ci ratio: 9.653424e-02	ci left: 4.957953e-02	ci right 5.464099e-02	k: 1562	n:30000
KS ci ratio: 5.197871e-02	ci left: 1.552083e-01	ci right 1.635244e-01	k: 4780	n:30000
C9orf173   30000 perm   6 sec   (5313 perm/sec)   p_kst 1.593333e-01   p_cons 5.206667e-02   p_joint 2.603333e-02

Joint ci ratio: 1.147438e-01	ci left: 2.672103e-02	ci right 2.999792e-02	k: 1133	n:40000
Cons ci ratio: 8.404911e-02	ci left: 4.940321e-02	ci right 5.376218e-02	k: 2062	n:40000
KS ci ratio: 4.476741e-02	ci left: 1.572371e-01	ci right 1.644622e-01	k: 6433	n:40000
C9orf173   40000 perm   8 sec   (5138 perm/sec)   p_kst 1.608250e-01   p_cons 5.155000e-02   p_joint 2.832500e-02

Joint ci ratio: 9.975184e-02	ci left: 2.846355e-02	ci right 3.147135e-02	k: 1497	n:50000
Cons ci ratio: 7.529535e-02	ci left: 4.948062e-02	ci right 5.337167e-02	k: 2570	n:50000
KS ci ratio: 4.025169e-02	ci left: 1.562212e-01	ci right 1.626584e-01	k: 7971	n:50000
C9orf173   50000 perm   10 sec   (4995 perm/sec)   p_kst 1.594200e-01   p_cons 5.140000e-02   p_joint 2.994000e-02

Outputting figure to mutsig2_images.part000000000028/C9orf173.2_951_50000_0.15942_0.0514_0.02994.png
                gene_name: C9orf173
               theta_stop: 0.100 
                    nperm: 50000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.051 
      ci_cons_bounds_left: 0.049 
     ci_cons_bounds_right: 0.053 
                  p_joint: 0.030 
     ci_joint_bounds_left: 0.028 
    ci_joint_bounds_right: 0.031 

Current progress: 69 percent done.
C9orf40
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.782131e-02	ci left: 3.921708e-01	ci right 4.114864e-01	k: 4018	n:10000
KS ci ratio: 2.523414e-02	ci left: 6.979701e-01	ci right 7.159092e-01	k: 7070	n:10000
C9orf40   10000 perm   1 sec   (6979 perm/sec)   p_kst 7.070000e-01   p_cons 4.018000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000028/C9orf40.2_593_10000_0.707_0.4018_1.png
                gene_name: C9orf40
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
C9orf46
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.373378e-03	ci left: 9.854505e-01	ci right 9.898586e-01	k: 9878	n:10000
Cons ci ratio: 5.487243e-02	ci left: 3.285285e-01	ci right 3.471661e-01	k: 3378	n:10000
KS ci ratio: 6.577857e-03	ci left: 9.693152e-01	ci right 9.758056e-01	k: 9727	n:10000
C9orf46   10000 perm   1 sec   (6960 perm/sec)   p_kst 9.727000e-01   p_cons 3.378000e-01   p_joint 9.878000e-01

Outputting figure to mutsig2_images.part000000000028/C9orf46.2_460_10000_0.9727_0.3378_0.9878.png
                gene_name: C9orf46
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 74 percent done.
C9orf68
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.410615e-02	ci left: 8.789942e-01	ci right 8.915804e-01	k: 8854	n:10000
KS ci ratio: 2.202833e-02	ci left: 7.515043e-01	ci right 7.683440e-01	k: 7600	n:10000
C9orf68   10000 perm   1 sec   (6886 perm/sec)   p_kst 7.600000e-01   p_cons 8.854000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000028/C9orf68.2_1041_10000_0.76_0.8854_1.png
                gene_name: C9orf68
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
C9orf72
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.144422e-01	ci left: 9.895988e-02	ci right 1.110713e-01	k: 1049	n:10000
Cons ci ratio: 2.090368e-02	ci left: 7.703319e-01	ci right 7.867055e-01	k: 7786	n:10000
KS ci ratio: 1.524659e-01	ci left: 5.725512e-02	ci right 6.680198e-02	k: 619	n:10000
C9orf72   10000 perm   2 sec   (6269 perm/sec)   p_kst 6.190000e-02   p_cons 7.786000e-01   p_joint 1.049000e-01

Joint ci ratio: 7.249256e-02	ci left: 1.229069e-01	ci right 1.322016e-01	k: 2550	n:20000
Cons ci ratio: 1.468671e-02	ci left: 7.750009e-01	ci right 7.865174e-01	k: 15616	n:20000
KS ci ratio: 1.088451e-01	ci left: 5.757595e-02	ci right 6.425241e-02	k: 1217	n:20000
C9orf72   20000 perm   4 sec   (5110 perm/sec)   p_kst 6.085000e-02   p_cons 7.808000e-01   p_joint 1.275000e-01

Joint ci ratio: 6.584164e-02	ci left: 1.021768e-01	ci right 1.091664e-01	k: 3169	n:30000
Cons ci ratio: 1.191219e-02	ci left: 7.783588e-01	ci right 7.877197e-01	k: 23492	n:30000
KS ci ratio: 8.989847e-02	ci left: 5.691449e-02	ci right 6.230453e-02	k: 1787	n:30000
C9orf72   30000 perm   6 sec   (4910 perm/sec)   p_kst 5.956667e-02   p_cons 7.830667e-01   p_joint 1.056333e-01

Outputting figure to mutsig2_images.part000000000028/C9orf72.2_1490_30000_0.059567_0.78307_0.10563.png
                gene_name: C9orf72
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.060 
        ci_ks_bounds_left: 0.057 
       ci_ks_bounds_right: 0.062 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 79 percent done.
C9orf78
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.697756e-03	ci left: 9.764223e-01	ci right 9.820937e-01	k: 9794	n:10000
Cons ci ratio: 1.237722e-02	ci left: 9.036042e-01	ci right 9.149561e-01	k: 9094	n:10000
KS ci ratio: 2.623040e-02	ci left: 6.815364e-01	ci right 6.997525e-01	k: 6907	n:10000
C9orf78   10000 perm   2 sec   (6532 perm/sec)   p_kst 6.907000e-01   p_cons 9.094000e-01   p_joint 9.794000e-01

Outputting figure to mutsig2_images.part000000000028/C9orf78.2_906_10000_0.6907_0.9094_0.9794.png
                gene_name: C9orf78
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 81 percent done.
C9orf86
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.956496e-02	ci left: 2.325450e-01	ci right 2.494061e-01	k: 2409	n:10000
KS ci ratio: 5.409992e-03	ci left: 9.785573e-01	ci right 9.839571e-01	k: 9814	n:10000
C9orf86   10000 perm   2 sec   (5732 perm/sec)   p_kst 9.814000e-01   p_cons 2.409000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000028/C9orf86.2_2497_10000_0.9814_0.2409_1.png
                gene_name: C9orf86
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
CA12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.453827e-02	ci left: 1.397211e-01	ci right 1.536854e-01	k: 1466	n:10000
Cons ci ratio: 1.284434e-01	ci left: 7.970251e-02	ci right 9.074052e-02	k: 851	n:10000
KS ci ratio: 5.903404e-02	ci left: 2.968763e-01	ci right 3.150368e-01	k: 3059	n:10000
CA12   10000 perm   2 sec   (6541 perm/sec)   p_kst 3.059000e-01   p_cons 8.510000e-02   p_joint 1.466000e-01

Joint ci ratio: 7.516773e-02	ci left: 1.151825e-01	ci right 1.242283e-01	k: 2393	n:20000
Cons ci ratio: 9.228307e-02	ci left: 7.891869e-02	ci right 8.660313e-02	k: 1654	n:20000
KS ci ratio: 4.163564e-02	ci left: 3.006607e-01	ci right 3.134955e-01	k: 6141	n:20000
CA12   20000 perm   4 sec   (5660 perm/sec)   p_kst 3.070500e-01   p_cons 8.270000e-02   p_joint 1.196500e-01

Outputting figure to mutsig2_images.part000000000028/CA12.2_1109_20000_0.30705_0.0827_0.11965.png
                gene_name: CA12
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.083 
      ci_cons_bounds_left: 0.079 
     ci_cons_bounds_right: 0.087 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 86 percent done.
CA5A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.398202e-02	ci left: 2.110256e-01	ci right 2.273383e-01	k: 2191	n:10000
Cons ci ratio: 7.148093e-02	ci left: 2.228673e-01	ci right 2.394896e-01	k: 2311	n:10000
KS ci ratio: 7.160178e-02	ci left: 2.222750e-01	ci right 2.388823e-01	k: 2305	n:10000
CA5A   10000 perm   2 sec   (6648 perm/sec)   p_kst 2.305000e-01   p_cons 2.311000e-01   p_joint 2.191000e-01

Outputting figure to mutsig2_images.part000000000028/CA5A.2_946_10000_0.2305_0.2311_0.2191.png
                gene_name: CA5A
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 88 percent done.
CA5B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.213559e-02	ci left: 9.068938e-01	ci right 9.180646e-01	k: 9126	n:10000
Cons ci ratio: 1.393891e-02	ci left: 8.814508e-01	ci right 8.939223e-01	k: 8878	n:10000
KS ci ratio: 2.412351e-02	ci left: 7.164367e-01	ci right 7.340319e-01	k: 7253	n:10000
CA5B   10000 perm   2 sec   (6590 perm/sec)   p_kst 7.253000e-01   p_cons 8.878000e-01   p_joint 9.126000e-01

Outputting figure to mutsig2_images.part000000000028/CA5B.2_982_10000_0.7253_0.8878_0.9126.png
                gene_name: CA5B
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 90 percent done.
CA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.204869e-02	ci left: 4.550858e-01	ci right 4.747347e-01	k: 4649	n:10000
Cons ci ratio: 5.549126e-02	ci left: 3.235641e-01	ci right 3.421333e-01	k: 3328	n:10000
KS ci ratio: 5.147127e-02	ci left: 3.575431e-01	ci right 3.765344e-01	k: 3670	n:10000
CA6   10000 perm   2 sec   (6634 perm/sec)   p_kst 3.670000e-01   p_cons 3.328000e-01   p_joint 4.649000e-01

Outputting figure to mutsig2_images.part000000000028/CA6.2_959_10000_0.367_0.3328_0.4649.png
                gene_name: CA6
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.47 

Current progress: 93 percent done.
CABP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.710988e-02	ci left: 5.174580e-01	ci right 5.371261e-01	k: 5273	n:10000
Cons ci ratio: 2.209987e-01	ci left: 2.712237e-02	ci right 3.395474e-02	k: 304	n:10000
KS ci ratio: 7.070558e-02	ci left: 2.267179e-01	ci right 2.434367e-01	k: 2350	n:10000
CABP2   10000 perm   1 sec   (7169 perm/sec)   p_kst 2.350000e-01   p_cons 3.040000e-02   p_joint 5.273000e-01

Joint ci ratio: 1.108454e-01	ci left: 5.557898e-02	ci right 6.215000e-02	k: 1176	n:20000
Cons ci ratio: 1.587049e-01	ci left: 2.724667e-02	ci right 3.199140e-02	k: 591	n:20000
KS ci ratio: 4.908298e-02	ci left: 2.358292e-01	ci right 2.477459e-01	k: 4835	n:20000
CABP2   20000 perm   3 sec   (6056 perm/sec)   p_kst 2.417500e-01   p_cons 2.955000e-02   p_joint 5.880000e-02

Joint ci ratio: 5.487546e-02	ci left: 1.413630e-01	ci right 1.493725e-01	k: 4360	n:30000
Cons ci ratio: 1.280313e-01	ci left: 2.835696e-02	ci right 3.226803e-02	k: 908	n:30000
KS ci ratio: 4.017848e-02	ci left: 2.360034e-01	ci right 2.457135e-01	k: 7225	n:30000
CABP2   30000 perm   5 sec   (5711 perm/sec)   p_kst 2.408333e-01   p_cons 3.026667e-02   p_joint 1.453333e-01

Joint ci ratio: 3.526751e-02	ci left: 2.317959e-01	ci right 2.401425e-01	k: 9438	n:40000
Cons ci ratio: 1.104565e-01	ci left: 2.883649e-02	ci right 3.223212e-02	k: 1220	n:40000
KS ci ratio: 3.471653e-02	ci left: 2.374861e-01	ci right 2.459014e-01	k: 9667	n:40000
CABP2   40000 perm   7 sec   (5492 perm/sec)   p_kst 2.416750e-01   p_cons 3.050000e-02   p_joint 2.359500e-01

Joint ci ratio: 5.207273e-02	ci left: 9.914293e-02	ci right 1.044634e-01	k: 5089	n:50000
Cons ci ratio: 9.920698e-02	ci left: 2.877582e-02	ci right 3.179904e-02	k: 1513	n:50000
KS ci ratio: 3.104635e-02	ci left: 2.379924e-01	ci right 2.455177e-01	k: 12087	n:50000
CABP2   50000 perm   9 sec   (5323 perm/sec)   p_kst 2.417400e-01   p_cons 3.026000e-02   p_joint 1.017800e-01

Outputting figure to mutsig2_images.part000000000028/CABP2.2_691_50000_0.24174_0.03026_0.10178.png
                gene_name: CABP2
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.030 
      ci_cons_bounds_left: 0.029 
     ci_cons_bounds_right: 0.032 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.099 
    ci_joint_bounds_right: 0.10 

Current progress: 95 percent done.
CACNB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.198321e-02	ci left: 5.906213e-01	ci right 6.099202e-01	k: 6003	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
CACNB3   10000 perm   2 sec   (6230 perm/sec)   p_kst 1   p_cons 6.003000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000028/CACNB3.2_1507_10000_1_0.6003_1.png
                gene_name: CACNB3
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
CACNG4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.925084e-02	ci left: 6.328151e-01	ci right 6.517020e-01	k: 6423	n:10000
KS ci ratio: 2.514891e-02	ci left: 6.993822e-01	ci right 7.172963e-01	k: 7084	n:10000
CACNG4   10000 perm   2 sec   (6455 perm/sec)   p_kst 7.084000e-01   p_cons 6.423000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000028/CACNG4.2_1000_10000_0.7084_0.6423_1.png
                gene_name: CACNG4
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000028
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 28 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1706>
Subject: Job 8003937: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1706>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000029> was used as the working directory.
Started at Sun Nov 11 15:04:32 2012
Results reported at Sun Nov 11 15:11:56 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000029.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000029.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 29  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000029.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    480.74 sec.
    Max Memory :      4662 MB
    Max Swap   :      7074 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
29
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 29
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 29: processing genes 2534 - 2624
Calculating significance of each gene.
Using projection method.
2534	CACNG6	3.549577e-01
2535	CACNG7	2.389351e-02
2536	CACNG8	5.470304e-01
2537	CACYBP	4.985913e-01
2538	CAD	8.105043e-01
2539	CADM1	1
2540	CADM2	2.518027e-02
2541	CADM3	1.941184e-01
2542	CADM4	7.954263e-01
2543	CADPS	9.859001e-01
2544	CADPS2	6.079547e-03
2545	CAGE1	1
2546	CALB1	6.885195e-01
2547	CALB2	5.617620e-01
2548	CALCA	1
2549	CALCB	1
2550	CALCOCO1	6.489855e-01
2551	CALCOCO2	1
2552	CALCR	1.362414e-01
2553	CALCRL	2.601012e-01
2554	CALD1	8.015186e-01
2555	CALHM1	1
2556	CALHM2	6.536460e-01
2557	CALM1	1
2558	CALM2	1.693894e-01
2559	CALM3	1
2560	CALML3	1
2561	CALML4	1
2562	CALML5	5.140269e-02
2563	CALML6	3.311616e-01
2564	CALN1	1.508756e-04
2565	CALR	6.204251e-01
2566	CALR3	1
2567	CALU	7.276044e-01
2568	CALY	1
2569	CAMK1	1
2570	CAMK1D	8.144089e-01
2571	CAMK1G	2.247473e-01
2572	CAMK2A	7.921071e-01
2573	CAMK2B	5.742208e-01
2574	CAMK2D	9.037078e-01
2575	CAMK2G	1
2576	CAMK2N1	1
2577	CAMK2N2	1
2578	CAMK4	2.358909e-01
2579	CAMKK1	1
2580	CAMKK2	7.819273e-01
2581	CAMKV	1
2582	CAMLG	3.584509e-01
2583	CAMP	1
2584	CAMSAP1	6.433665e-01
2585	CAMSAP1L1	9.666916e-01
2586	CAMTA1	9.510709e-01
2587	CAMTA2	9.617582e-01
2588	CAND1	8.047216e-01
2589	CAND2	9.659030e-01
2590	CANT1	1
2591	CANX	5.497425e-01
2592	CAP1	4.180846e-01
2593	CAP2	9.005382e-01
2594	CAPG	2.681250e-01
2595	CAPN1	7.078935e-01
2596	CAPN10	6.196460e-01
2597	CAPN11	8.209447e-01
2598	CAPN12	8.508242e-01
2599	CAPN13	8.557642e-01
2600	CAPN2	7.361519e-01
2601	CAPN3	3.056566e-02
2602	CAPN5	5.971223e-01
2603	CAPN6	8.304724e-01
2604	CAPN7	9.705471e-01
2605	CAPN9	8.727763e-01
2606	CAPNS1	1
2607	CAPNS2	6.588343e-01
2608	CAPRIN1	8.971229e-01
2609	CAPRIN2	9.709427e-01
2610	CAPS	1
2611	CAPS2	5.344322e-01
2612	CAPSL	1.089231e-01
2613	CAPZA1	2.914025e-01
2614	CAPZA2	1
2615	CAPZA3	2.398388e-01
2616	CAPZB	5.987900e-01
2617	CARD10	8.323332e-01
2618	CARD11	6.887427e-01
2619	CARD14	9.511678e-01
2620	CARD16	1
2621	CARD17	1
2622	CARD18	1.041325e-01
2623	CARD6	1
2624	CARD8	5.388963e-01
Done

Running MutSig 2:
Scatter job 29: processing genes 2534 - 2624
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CADPS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.194625e-01	ci left: 9.136461e-02	ci right 1.030712e-01	k: 971	n:10000
Cons ci ratio: 1.059497e-01	ci left: 1.139852e-01	ci right 1.268368e-01	k: 1203	n:10000
KS ci ratio: 1.407264e-01	ci left: 6.691220e-02	ci right 7.713880e-02	k: 719	n:10000
CADPS2   10000 perm   2 sec   (4009 perm/sec)   p_kst 7.190000e-02   p_cons 1.203000e-01   p_joint 9.710000e-02

Joint ci ratio: 1.150043e-01	ci left: 5.173437e-02	ci right 5.809581e-02	k: 1097	n:20000
Cons ci ratio: 7.453255e-02	ci left: 1.169532e-01	ci right 1.260571e-01	k: 2429	n:20000
KS ci ratio: 9.969730e-02	ci left: 6.816195e-02	ci right 7.536315e-02	k: 1434	n:20000
CADPS2   20000 perm   7 sec   (2778 perm/sec)   p_kst 7.170000e-02   p_cons 1.214500e-01   p_joint 5.485000e-02

Joint ci ratio: 8.483965e-02	ci left: 6.360800e-02	ci right 6.927632e-02	k: 1992	n:30000
Cons ci ratio: 5.896529e-02	ci left: 1.246010e-01	ci right 1.322045e-01	k: 3851	n:30000
KS ci ratio: 8.186495e-02	ci left: 6.808608e-02	ci right 7.393066e-02	k: 2129	n:30000
CADPS2   30000 perm   10 sec   (2969 perm/sec)   p_kst 7.096667e-02   p_cons 1.283667e-01   p_joint 6.640000e-02

Outputting figure to mutsig2_images.part000000000029/CADPS2.16_4055_30000_0.070967_0.12837_0.0664.png
                gene_name: CADPS2
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.071 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.074 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.066 
     ci_joint_bounds_left: 0.064 
    ci_joint_bounds_right: 0.069 

Current progress: 2 percent done.
CAD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.905474e-01	ci left: 3.672071e-02	ci right 4.454977e-02	k: 405	n:10000
Cons ci ratio: 3.242904e-01	ci left: 1.206533e-02	ci right 1.682370e-02	k: 143	n:10000
KS ci ratio: 4.565297e-02	ci left: 4.145864e-01	ci right 4.340577e-01	k: 4243	n:10000
CAD   10000 perm   2 sec   (4150 perm/sec)   p_kst 4.243000e-01   p_cons 1.430000e-02   p_joint 4.050000e-02

Joint ci ratio: 9.076681e-02	ci left: 8.141531e-02	ci right 8.920575e-02	k: 1705	n:20000
Cons ci ratio: 2.198255e-01	ci left: 1.392826e-02	ci right 1.741462e-02	k: 312	n:20000
KS ci ratio: 3.278843e-02	ci left: 4.099047e-01	ci right 4.236195e-01	k: 8335	n:20000
CAD   20000 perm   5 sec   (3784 perm/sec)   p_kst 4.167500e-01   p_cons 1.560000e-02   p_joint 8.525000e-02

Joint ci ratio: 9.104098e-02	ci left: 5.554431e-02	ci right 6.087498e-02	k: 1745	n:30000
Cons ci ratio: 1.791977e-01	ci left: 1.429182e-02	ci right 1.713642e-02	k: 470	n:30000
KS ci ratio: 2.664894e-02	ci left: 4.134082e-01	ci right 4.246075e-01	k: 12570	n:30000
CAD   30000 perm   8 sec   (3641 perm/sec)   p_kst 4.190000e-01   p_cons 1.566667e-02   p_joint 5.816667e-02

Joint ci ratio: 6.988287e-02	ci left: 7.037089e-02	ci right 7.549132e-02	k: 2916	n:40000
Cons ci ratio: 1.533403e-01	ci left: 1.484121e-02	ci right 1.732977e-02	k: 642	n:40000
KS ci ratio: 2.300688e-02	ci left: 4.156808e-01	ci right 4.253807e-01	k: 16821	n:40000
CAD   40000 perm   11 sec   (3551 perm/sec)   p_kst 4.205250e-01   p_cons 1.605000e-02   p_joint 7.290000e-02

Joint ci ratio: 6.546042e-02	ci left: 6.472521e-02	ci right 6.912523e-02	k: 3345	n:50000
Cons ci ratio: 1.366132e-01	ci left: 1.509227e-02	ci right 1.732441e-02	k: 809	n:50000
KS ci ratio: 2.065456e-02	ci left: 4.143905e-01	ci right 4.230589e-01	k: 20936	n:50000
CAD   50000 perm   14 sec   (3479 perm/sec)   p_kst 4.187200e-01   p_cons 1.618000e-02   p_joint 6.690000e-02

Joint ci ratio: 5.849596e-02	ci left: 6.759280e-02	ci right 7.168228e-02	k: 4177	n:60000
Cons ci ratio: 1.251694e-01	ci left: 1.507575e-02	ci right 1.710479e-02	k: 964	n:60000
KS ci ratio: 1.888686e-02	ci left: 4.139493e-01	ci right 4.218587e-01	k: 25074	n:60000
CAD   60000 perm   18 sec   (3415 perm/sec)   p_kst 4.179000e-01   p_cons 1.606667e-02   p_joint 6.961667e-02

Joint ci ratio: 5.276403e-02	ci left: 7.115406e-02	ci right 7.502428e-02	k: 5115	n:70000
Cons ci ratio: 1.147417e-01	ci left: 1.545819e-02	ci right 1.735363e-02	k: 1147	n:70000
KS ci ratio: 1.750801e-02	ci left: 4.136291e-01	ci right 4.209492e-01	k: 29210	n:70000
CAD   70000 perm   21 sec   (3361 perm/sec)   p_kst 4.172857e-01   p_cons 1.638571e-02   p_joint 7.307143e-02

Joint ci ratio: 5.222638e-02	ci left: 6.406677e-02	ci right 6.751480e-02	k: 5262	n:80000
Cons ci ratio: 1.078336e-01	ci left: 1.537302e-02	ci right 1.713731e-02	k: 1299	n:80000
KS ci ratio: 1.643377e-02	ci left: 4.121943e-01	ci right 4.190368e-01	k: 33249	n:80000
CAD   80000 perm   24 sec   (3307 perm/sec)   p_kst 4.156125e-01   p_cons 1.623750e-02   p_joint 6.577500e-02

Joint ci ratio: 5.025035e-02	ci left: 6.173965e-02	ci right 6.493301e-02	k: 5699	n:90000
Cons ci ratio: 1.024346e-01	ci left: 1.519032e-02	ci right 1.684109e-02	k: 1440	n:90000
KS ci ratio: 1.549364e-02	ci left: 4.123997e-01	ci right 4.188502e-01	k: 37406	n:90000
CAD   90000 perm   28 sec   (3260 perm/sec)   p_kst 4.156222e-01   p_cons 1.600000e-02   p_joint 6.332222e-02

Joint ci ratio: 4.720133e-02	ci left: 6.299506e-02	ci right 6.605026e-02	k: 6451	n:100000
Cons ci ratio: 9.705836e-02	ci left: 1.527042e-02	ci right 1.683784e-02	k: 1604	n:100000
KS ci ratio: 1.467145e-02	ci left: 4.134620e-01	ci right 4.195829e-01	k: 41652	n:100000
CAD   100000 perm   31 sec   (3215 perm/sec)   p_kst 4.165200e-01   p_cons 1.604000e-02   p_joint 6.451000e-02

Outputting figure to mutsig2_images.part000000000029/CAD.10_6854_100000_0.41652_0.01604_0.06451.png
                gene_name: CAD
               theta_stop: 0.097 
                    nperm: 100000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.016 
      ci_cons_bounds_left: 0.015 
     ci_cons_bounds_right: 0.017 
                  p_joint: 0.065 
     ci_joint_bounds_left: 0.063 
    ci_joint_bounds_right: 0.066 

Current progress: 5 percent done.
CALCR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.774561e-02	ci left: 6.568600e-01	ci right 6.754431e-01	k: 6662	n:10000
Cons ci ratio: 6.348859e-02	ci left: 2.671559e-01	ci right 2.847748e-01	k: 2759	n:10000
KS ci ratio: 2.217319e-02	ci left: 7.490766e-01	ci right 7.659732e-01	k: 7576	n:10000
CALCR   10000 perm   2 sec   (5961 perm/sec)   p_kst 7.576000e-01   p_cons 2.759000e-01   p_joint 6.662000e-01

Outputting figure to mutsig2_images.part000000000029/CALCR.10_1583_10000_0.7576_0.2759_0.6662.png
                gene_name: CALCR
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 7 percent done.
CAMTA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.310302e-02	ci left: 4.428093e-01	ci right 4.624183e-01	k: 4526	n:10000
Cons ci ratio: 1.055514e-01	ci left: 1.147668e-01	ci right 1.276548e-01	k: 1211	n:10000
KS ci ratio: 1.903571e-02	ci left: 8.013591e-01	ci right 8.168604e-01	k: 8092	n:10000
CAMTA1   10000 perm   2 sec   (4306 perm/sec)   p_kst 8.092000e-01   p_cons 1.211000e-01   p_joint 4.526000e-01

Joint ci ratio: 2.832740e-02	ci left: 4.821491e-01	ci right 4.960540e-01	k: 9782	n:20000
Cons ci ratio: 7.467253e-02	ci left: 1.165597e-01	ci right 1.256508e-01	k: 2421	n:20000
KS ci ratio: 1.347084e-02	ci left: 8.034319e-01	ci right 8.143782e-01	k: 16179	n:20000
CAMTA1   20000 perm   5 sec   (3941 perm/sec)   p_kst 8.089500e-01   p_cons 1.210500e-01   p_joint 4.891000e-01

Outputting figure to mutsig2_images.part000000000029/CAMTA1.9_5114_20000_0.80895_0.12105_0.4891.png
                gene_name: CAMTA1
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 10 percent done.
CADPS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.522196e-02	ci left: 6.981718e-01	ci right 7.161074e-01	k: 7072	n:10000
KS ci ratio: 3.222363e-02	ci left: 5.870082e-01	ci right 6.063355e-01	k: 5967	n:10000
CADPS   10000 perm   2 sec   (4585 perm/sec)   p_kst 5.967000e-01   p_cons 7.072000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000029/CADPS.8_4255_10000_0.5967_0.7072_1.png
                gene_name: CADPS
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 12 percent done.
CALN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.589188e-02	ci left: 2.025451e-01	ci right 2.186238e-01	k: 2105	n:10000
Cons ci ratio: 6.651539e-03	ci left: 9.686815e-01	ci right 9.752397e-01	k: 9721	n:10000
KS ci ratio: 1.326580e-01	ci left: 7.494951e-02	ci right 8.569647e-02	k: 802	n:10000
CALN1   10000 perm   2 sec   (5666 perm/sec)   p_kst 8.020000e-02   p_cons 9.721000e-01   p_joint 2.105000e-01

Joint ci ratio: 6.012040e-02	ci left: 1.700035e-01	ci right 1.805910e-01	k: 3505	n:20000
Cons ci ratio: 4.751262e-03	ci left: 9.690992e-01	ci right 9.737623e-01	k: 19430	n:20000
KS ci ratio: 9.352068e-02	ci left: 7.696131e-02	ci right 8.456110e-02	k: 1614	n:20000
CALN1   20000 perm   4 sec   (5115 perm/sec)   p_kst 8.070000e-02   p_cons 9.715000e-01   p_joint 1.752500e-01

Outputting figure to mutsig2_images.part000000000029/CALN1.8_810_20000_0.0807_0.9715_0.17525.png
                gene_name: CALN1
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.081 
        ci_ks_bounds_left: 0.077 
       ci_ks_bounds_right: 0.085 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 14 percent done.
CAPN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.329855e-02	ci left: 1.736942e-01	ci right 1.888919e-01	k: 1812	n:10000
Cons ci ratio: 1.245670e-01	ci left: 8.446093e-02	ci right 9.577916e-02	k: 900	n:10000
KS ci ratio: 5.527957e-02	ci left: 3.252519e-01	ci right 3.438446e-01	k: 3345	n:10000
CAPN3   10000 perm   2 sec   (5097 perm/sec)   p_kst 3.345000e-01   p_cons 9.000000e-02   p_joint 1.812000e-01

Joint ci ratio: 6.470589e-02	ci left: 1.500098e-01	ci right 1.600907e-01	k: 3100	n:20000
Cons ci ratio: 8.752461e-02	ci left: 8.714669e-02	ci right 9.517263e-02	k: 1822	n:20000
KS ci ratio: 3.897035e-02	ci left: 3.293536e-01	ci right 3.424942e-01	k: 6718	n:20000
CAPN3   20000 perm   4 sec   (4514 perm/sec)   p_kst 3.359000e-01   p_cons 9.110000e-02   p_joint 1.550000e-01

Outputting figure to mutsig2_images.part000000000029/CAPN3.8_2614_20000_0.3359_0.0911_0.155.png
                gene_name: CAPN3
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.091 
      ci_cons_bounds_left: 0.087 
     ci_cons_bounds_right: 0.095 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 17 percent done.
CAPN6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.654654e-02	ci left: 2.489515e-01	ci right 2.661899e-01	k: 2575	n:10000
Cons ci ratio: 1.880121e-02	ci left: 8.052171e-01	ci right 8.206001e-01	k: 8130	n:10000
KS ci ratio: 9.334826e-02	ci left: 1.428581e-01	ci right 1.569465e-01	k: 1498	n:10000
CAPN6   10000 perm   2 sec   (5263 perm/sec)   p_kst 1.498000e-01   p_cons 8.130000e-01   p_joint 2.575000e-01

Outputting figure to mutsig2_images.part000000000029/CAPN6.6_1974_10000_0.1498_0.813_0.2575.png
                gene_name: CAPN6
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 19 percent done.
CADM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.086321e-02	ci left: 2.259279e-01	ci right 2.426271e-01	k: 2342	n:10000
Cons ci ratio: 2.637780e-02	ci left: 6.791178e-01	ci right 6.973724e-01	k: 6883	n:10000
KS ci ratio: 1.190559e-01	ci left: 9.194847e-02	ci right 1.036870e-01	k: 977	n:10000
CADM2   10000 perm   2 sec   (5456 perm/sec)   p_kst 9.770000e-02   p_cons 6.883000e-01   p_joint 2.342000e-01

Joint ci ratio: 6.223004e-02	ci left: 1.603734e-01	ci right 1.707240e-01	k: 3310	n:20000
Cons ci ratio: 1.875036e-02	ci left: 6.795664e-01	ci right 6.924795e-01	k: 13721	n:20000
KS ci ratio: 8.447442e-02	ci left: 9.307925e-02	ci right 1.013383e-01	k: 1943	n:20000
CADM2   20000 perm   4 sec   (4924 perm/sec)   p_kst 9.715000e-02   p_cons 6.860500e-01   p_joint 1.655000e-01

Outputting figure to mutsig2_images.part000000000029/CADM2.5_1419_20000_0.09715_0.68605_0.1655.png
                gene_name: CADM2
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.097 
        ci_ks_bounds_left: 0.093 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 21 percent done.
CALCOCO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.394965e-02	ci left: 1.714324e-01	ci right 1.865551e-01	k: 1789	n:10000
Cons ci ratio: 1.643706e-02	ci left: 8.433592e-01	ci right 8.574360e-01	k: 8505	n:10000
KS ci ratio: 1.632674e-01	ci left: 5.003500e-02	ci right 5.902673e-02	k: 544	n:10000
CALCOCO1   10000 perm   2 sec   (5412 perm/sec)   p_kst 5.440000e-02   p_cons 8.505000e-01   p_joint 1.789000e-01

Joint ci ratio: 5.884234e-02	ci left: 1.762293e-01	ci right 1.869634e-01	k: 3631	n:20000
Cons ci ratio: 1.169959e-02	ci left: 8.437594e-01	ci right 8.537390e-01	k: 16976	n:20000
KS ci ratio: 1.155622e-01	ci left: 5.124802e-02	ci right 5.758231e-02	k: 1087	n:20000
CALCOCO1   20000 perm   4 sec   (4888 perm/sec)   p_kst 5.435000e-02   p_cons 8.488000e-01   p_joint 1.815500e-01

Joint ci ratio: 5.773348e-02	ci left: 1.293410e-01	ci right 1.370635e-01	k: 3995	n:30000
Cons ci ratio: 9.499091e-03	ci left: 8.461448e-01	ci right 8.542539e-01	k: 25507	n:30000
KS ci ratio: 9.709255e-02	ci left: 4.902588e-02	ci right 5.406141e-02	k: 1545	n:30000
CALCOCO1   30000 perm   6 sec   (4676 perm/sec)   p_kst 5.150000e-02   p_cons 8.502333e-01   p_joint 1.331667e-01

Outputting figure to mutsig2_images.part000000000029/CALCOCO1.5_2132_30000_0.0515_0.85023_0.13317.png
                gene_name: CALCOCO1
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.051 
        ci_ks_bounds_left: 0.049 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 24 percent done.
CAMSAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.296414e-02	ci left: 4.444059e-01	ci right 4.640208e-01	k: 4542	n:10000
Cons ci ratio: 5.016777e-02	ci left: 3.694779e-01	ci right 3.885927e-01	k: 3790	n:10000
KS ci ratio: 3.601525e-02	ci left: 5.323740e-01	ci right 5.520014e-01	k: 5422	n:10000
CAMSAP1   10000 perm   2 sec   (4693 perm/sec)   p_kst 5.422000e-01   p_cons 3.790000e-01   p_joint 4.542000e-01

Outputting figure to mutsig2_images.part000000000029/CAMSAP1.5_4877_10000_0.5422_0.379_0.4542.png
                gene_name: CAMSAP1
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 26 percent done.
CAPN10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.314893e-02	ci left: 5.732631e-01	ci right 5.926885e-01	k: 5830	n:10000
Cons ci ratio: 7.272974e-02	ci left: 2.168465e-01	ci right 2.333139e-01	k: 2250	n:10000
KS ci ratio: 3.862612e-02	ci left: 4.974503e-01	ci right 5.171454e-01	k: 5073	n:10000
CAPN10   10000 perm   2 sec   (6103 perm/sec)   p_kst 5.073000e-01   p_cons 2.250000e-01   p_joint 5.830000e-01

Outputting figure to mutsig2_images.part000000000029/CAPN10.5_2222_10000_0.5073_0.225_0.583.png
                gene_name: CAPN10
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 29 percent done.
CARD11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.422738e-02	ci left: 2.626030e-01	ci right 2.801304e-01	k: 2713	n:10000
Cons ci ratio: 9.159391e-02	ci left: 1.476637e-01	ci right 1.619380e-01	k: 1547	n:10000
KS ci ratio: 4.734719e-02	ci left: 3.969510e-01	ci right 4.163034e-01	k: 4066	n:10000
CARD11   10000 perm   2 sec   (4749 perm/sec)   p_kst 4.066000e-01   p_cons 1.547000e-01   p_joint 2.713000e-01

Outputting figure to mutsig2_images.part000000000029/CARD11.5_3561_10000_0.4066_0.1547_0.2713.png
                gene_name: CARD11
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 31 percent done.
CARD6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.596067e-02	ci left: 6.859711e-01	ci right 7.041151e-01	k: 6951	n:10000
Cons ci ratio: 4.805083e-02	ci left: 3.898806e-01	ci right 4.091780e-01	k: 3995	n:10000
KS ci ratio: 2.755249e-02	ci left: 6.599808e-01	ci right 6.785206e-01	k: 6693	n:10000
CARD6   10000 perm   2 sec   (4641 perm/sec)   p_kst 6.693000e-01   p_cons 3.995000e-01   p_joint 6.951000e-01

Outputting figure to mutsig2_images.part000000000029/CARD6.5_3126_10000_0.6693_0.3995_0.6951.png
                gene_name: CARD6
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.70 

Current progress: 33 percent done.
CACNG7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.336085e-02	ci left: 2.138864e-01	ci right 2.302758e-01	k: 2220	n:10000
Cons ci ratio: 9.691176e-02	ci left: 1.337444e-01	ci right 1.474657e-01	k: 1405	n:10000
KS ci ratio: 6.466872e-02	ci left: 2.599312e-01	ci right 2.774037e-01	k: 2686	n:10000
CACNG7   10000 perm   2 sec   (6045 perm/sec)   p_kst 2.686000e-01   p_cons 1.405000e-01   p_joint 2.220000e-01

Outputting figure to mutsig2_images.part000000000029/CACNG7.4_848_10000_0.2686_0.1405_0.222.png
                gene_name: CACNG7
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 36 percent done.
CADM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.398202e-02	ci left: 2.110256e-01	ci right 2.273383e-01	k: 2191	n:10000
Cons ci ratio: 8.707717e-02	ci left: 1.611128e-01	ci right 1.758809e-01	k: 1684	n:10000
KS ci ratio: 8.313059e-02	ci left: 1.742843e-01	ci right 1.895015e-01	k: 1818	n:10000
CADM3   10000 perm   2 sec   (6215 perm/sec)   p_kst 1.818000e-01   p_cons 1.684000e-01   p_joint 2.191000e-01

Outputting figure to mutsig2_images.part000000000029/CADM3.4_1339_10000_0.1818_0.1684_0.2191.png
                gene_name: CADM3
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 38 percent done.
CAMSAP1L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.422036e-02	ci left: 7.148214e-01	ci right 7.324482e-01	k: 7237	n:10000
Cons ci ratio: 2.739085e-02	ci left: 6.625985e-01	ci right 6.811013e-01	k: 6719	n:10000
KS ci ratio: 4.664801e-02	ci left: 4.041232e-01	ci right 4.235270e-01	k: 4138	n:10000
CAMSAP1L1   10000 perm   2 sec   (4374 perm/sec)   p_kst 4.138000e-01   p_cons 6.719000e-01   p_joint 7.237000e-01

Outputting figure to mutsig2_images.part000000000029/CAMSAP1L1.4_4505_10000_0.4138_0.6719_0.7237.png
                gene_name: CAMSAP1L1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 40 percent done.
CAND1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.362105e-01	ci left: 2.362888e-02	ci right 3.005075e-02	k: 267	n:10000
Cons ci ratio: 1.968641e-02	ci left: 7.906032e-01	ci right 8.064225e-01	k: 7986	n:10000
KS ci ratio: 2.537862e-01	ci left: 2.033901e-02	ci right 2.634310e-02	k: 232	n:10000
CAND1   10000 perm   2 sec   (4894 perm/sec)   p_kst 2.320000e-02   p_cons 7.986000e-01   p_joint 2.670000e-02

Joint ci ratio: 1.201260e-01	ci left: 4.750575e-02	ci right 5.362575e-02	k: 1010	n:20000
Cons ci ratio: 1.397421e-02	ci left: 7.917110e-01	ci right 8.029024e-01	k: 15947	n:20000
KS ci ratio: 1.856719e-01	ci left: 1.977319e-02	ci right 2.386748e-02	k: 435	n:20000
CAND1   20000 perm   5 sec   (4297 perm/sec)   p_kst 2.175000e-02   p_cons 7.973500e-01   p_joint 5.050000e-02

Joint ci ratio: 1.163333e-01	ci left: 3.434145e-02	ci right 3.861558e-02	k: 1093	n:30000
Cons ci ratio: 1.143277e-02	ci left: 7.921006e-01	ci right 8.012419e-01	k: 23901	n:30000
KS ci ratio: 1.552825e-01	ci left: 1.918287e-02	ci right 2.244419e-02	k: 623	n:30000
CAND1   30000 perm   7 sec   (4163 perm/sec)   p_kst 2.076667e-02   p_cons 7.967000e-01   p_joint 3.643333e-02

Joint ci ratio: 1.068114e-01	ci left: 3.083247e-02	ci right 3.433582e-02	k: 1302	n:40000
Cons ci ratio: 9.959842e-03	ci left: 7.907834e-01	ci right 7.987238e-01	k: 31791	n:40000
KS ci ratio: 1.369366e-01	ci left: 1.869877e-02	ci right 2.147152e-02	k: 802	n:40000
CAND1   40000 perm   10 sec   (4073 perm/sec)   p_kst 2.005000e-02   p_cons 7.947750e-01   p_joint 3.255000e-02

Joint ci ratio: 9.507609e-02	ci left: 3.131459e-02	ci right 3.445995e-02	k: 1643	n:50000
Cons ci ratio: 8.919124e-03	ci left: 7.908105e-01	ci right 7.979153e-01	k: 39719	n:50000
KS ci ratio: 1.217243e-01	ci left: 1.908180e-02	ci right 2.157433e-02	k: 1015	n:50000
CAND1   50000 perm   13 sec   (3986 perm/sec)   p_kst 2.030000e-02   p_cons 7.943800e-01   p_joint 3.286000e-02

Joint ci ratio: 7.597505e-02	ci left: 4.086698e-02	ci right 4.411079e-02	k: 2548	n:60000
Cons ci ratio: 8.153962e-03	ci left: 7.906408e-01	ci right 7.971307e-01	k: 47634	n:60000
KS ci ratio: 1.116905e-01	ci left: 1.899197e-02	ci right 2.125478e-02	k: 1206	n:60000
CAND1   60000 perm   15 sec   (3901 perm/sec)   p_kst 2.010000e-02   p_cons 7.939000e-01   p_joint 4.246667e-02

Joint ci ratio: 9.274421e-02	ci left: 2.373035e-02	ci right 2.605212e-02	k: 1741	n:70000
Cons ci ratio: 7.534265e-03	ci left: 7.915305e-01	ci right 7.975308e-01	k: 55618	n:70000
KS ci ratio: 1.049041e-01	ci left: 1.853023e-02	ci right 2.059558e-02	k: 1368	n:70000
CAND1   70000 perm   18 sec   (3836 perm/sec)   p_kst 1.954286e-02   p_cons 7.945429e-01   p_joint 2.487143e-02

Joint ci ratio: 8.679586e-02	ci left: 2.378230e-02	ci right 2.595234e-02	k: 1988	n:80000
Cons ci ratio: 7.044803e-03	ci left: 7.918590e-01	ci right 7.974696e-01	k: 63574	n:80000
KS ci ratio: 9.763900e-02	ci left: 1.878482e-02	ci right 2.072523e-02	k: 1579	n:80000
CAND1   80000 perm   21 sec   (3777 perm/sec)   p_kst 1.973750e-02   p_cons 7.946750e-01   p_joint 2.485000e-02

Outputting figure to mutsig2_images.part000000000029/CAND1.4_3753_80000_0.019738_0.79468_0.02485.png
                gene_name: CAND1
               theta_stop: 0.098 
                    nperm: 80000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.021 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.025 
     ci_joint_bounds_left: 0.024 
    ci_joint_bounds_right: 0.026 

Current progress: 43 percent done.
CAGE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.654243e-02	ci left: 4.052191e-01	ci right 4.246305e-01	k: 4149	n:10000
Cons ci ratio: 7.125468e-03	ci left: 9.644665e-01	ci right 9.714574e-01	k: 9681	n:10000
KS ci ratio: 6.599437e-02	ci left: 2.521161e-01	ci right 2.694235e-01	k: 2607	n:10000
CAGE1   10000 perm   2 sec   (5525 perm/sec)   p_kst 2.607000e-01   p_cons 9.681000e-01   p_joint 4.149000e-01

Outputting figure to mutsig2_images.part000000000029/CAGE1.3_2678_10000_0.2607_0.9681_0.4149.png
                gene_name: CAGE1
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.42 

Current progress: 45 percent done.
CALCRL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.327139e-02	ci left: 7.306776e-01	ci right 7.479828e-01	k: 7394	n:10000
Cons ci ratio: 8.497168e-03	ci left: 9.509609e-01	ci right 9.591714e-01	k: 9552	n:10000
KS ci ratio: 3.233084e-02	ci left: 5.854025e-01	ci right 6.047421e-01	k: 5951	n:10000
CALCRL   10000 perm   2 sec   (5890 perm/sec)   p_kst 5.951000e-01   p_cons 9.552000e-01   p_joint 7.394000e-01

Outputting figure to mutsig2_images.part000000000029/CALCRL.3_1434_10000_0.5951_0.9552_0.7394.png
                gene_name: CALCRL
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 48 percent done.
CAMK1G
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.626875e-02	ci left: 8.460089e-01	ci right 8.599848e-01	k: 8531	n:10000
KS ci ratio: 4.901255e-03	ci left: 9.820981e-01	ci right 9.870138e-01	k: 9847	n:10000
CAMK1G   10000 perm   2 sec   (5942 perm/sec)   p_kst 9.847000e-01   p_cons 8.531000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000029/CAMK1G.3_1475_10000_0.9847_0.8531_1.png
                gene_name: CAMK1G
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
CAMK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.364973e-03	ci left: 9.711128e-01	ci right 9.774068e-01	k: 9744	n:10000
Cons ci ratio: 1.922651e-02	ci left: 7.982126e-01	ci right 8.138088e-01	k: 8061	n:10000
KS ci ratio: 4.738645e-02	ci left: 3.965527e-01	ci right 4.159020e-01	k: 4062	n:10000
CAMK4   10000 perm   2 sec   (5999 perm/sec)   p_kst 4.062000e-01   p_cons 8.061000e-01   p_joint 9.744000e-01

Outputting figure to mutsig2_images.part000000000029/CAMK4.3_1466_10000_0.4062_0.8061_0.9744.png
                gene_name: CAMK4
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 52 percent done.
CAPN13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.853727e-01	ci left: 3.882106e-02	ci right 4.684801e-02	k: 427	n:10000
Cons ci ratio: 2.195183e-01	ci left: 2.750089e-02	ci right 3.437595e-02	k: 308	n:10000
KS ci ratio: 5.084582e-02	ci left: 3.632113e-01	ci right 3.822629e-01	k: 3727	n:10000
CAPN13   10000 perm   2 sec   (5779 perm/sec)   p_kst 3.727000e-01   p_cons 3.080000e-02   p_joint 4.270000e-02

Joint ci ratio: 1.355252e-01	ci left: 3.742298e-02	ci right 4.291173e-02	k: 802	n:20000
Cons ci ratio: 1.539460e-01	ci left: 2.897822e-02	ci right 3.385926e-02	k: 627	n:20000
KS ci ratio: 3.605726e-02	ci left: 3.646977e-01	ci right 3.781397e-01	k: 7428	n:20000
CAPN13   20000 perm   4 sec   (5034 perm/sec)   p_kst 3.714000e-01   p_cons 3.135000e-02   p_joint 4.010000e-02

Joint ci ratio: 1.042188e-01	ci left: 4.268167e-02	ci right 4.740695e-02	k: 1350	n:30000
Cons ci ratio: 1.250818e-01	ci left: 2.971393e-02	ci right 3.371077e-02	k: 950	n:30000
KS ci ratio: 2.909173e-02	ci left: 3.715114e-01	ci right 3.825124e-01	k: 11310	n:30000
CAPN13   30000 perm   6 sec   (4841 perm/sec)   p_kst 3.770000e-01   p_cons 3.166667e-02   p_joint 4.500000e-02

Joint ci ratio: 1.028014e-01	ci left: 3.326907e-02	ci right 3.689883e-02	k: 1402	n:40000
Cons ci ratio: 1.090369e-01	ci left: 2.959084e-02	ci right 3.302765e-02	k: 1251	n:40000
KS ci ratio: 2.516914e-02	ci left: 3.727210e-01	ci right 3.822468e-01	k: 15099	n:40000
CAPN13   40000 perm   9 sec   (4703 perm/sec)   p_kst 3.774750e-01   p_cons 3.127500e-02   p_joint 3.505000e-02

Joint ci ratio: 9.053363e-02	ci left: 3.450149e-02	ci right 3.779265e-02	k: 1806	n:50000
Cons ci ratio: 9.768700e-02	ci left: 2.967384e-02	ci right 3.274091e-02	k: 1559	n:50000
KS ci ratio: 2.251866e-02	ci left: 3.730885e-01	ci right 3.816057e-01	k: 18867	n:50000
CAPN13   50000 perm   11 sec   (4569 perm/sec)   p_kst 3.773400e-01   p_cons 3.118000e-02   p_joint 3.612000e-02

Outputting figure to mutsig2_images.part000000000029/CAPN13.3_2094_50000_0.37734_0.03118_0.03612.png
                gene_name: CAPN13
               theta_stop: 0.098 
                    nperm: 50000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.031 
      ci_cons_bounds_left: 0.030 
     ci_cons_bounds_right: 0.033 
                  p_joint: 0.036 
     ci_joint_bounds_left: 0.035 
    ci_joint_bounds_right: 0.038 

Current progress: 55 percent done.
CAPRIN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.491783e-02	ci left: 7.032156e-01	ci right 7.210607e-01	k: 7122	n:10000
Cons ci ratio: 2.454756e-02	ci left: 7.093708e-01	ci right 7.271019e-01	k: 7183	n:10000
KS ci ratio: 4.204869e-02	ci left: 4.550858e-01	ci right 4.747347e-01	k: 4649	n:10000
CAPRIN2   10000 perm   2 sec   (5294 perm/sec)   p_kst 4.649000e-01   p_cons 7.183000e-01   p_joint 7.122000e-01

Outputting figure to mutsig2_images.part000000000029/CAPRIN2.3_3456_10000_0.4649_0.7183_0.7122.png
                gene_name: CAPRIN2
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 57 percent done.
CADM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.830757e-03	ci left: 9.360983e-01	ci right 9.454429e-01	k: 9409	n:10000
Cons ci ratio: 3.140657e-02	ci left: 5.993553e-01	ci right 6.185812e-01	k: 6090	n:10000
KS ci ratio: 3.232413e-02	ci left: 5.855029e-01	ci right 6.048417e-01	k: 5952	n:10000
CADM1   10000 perm   2 sec   (6316 perm/sec)   p_kst 5.952000e-01   p_cons 6.090000e-01   p_joint 9.409000e-01

Outputting figure to mutsig2_images.part000000000029/CADM1.2_1369_10000_0.5952_0.609_0.9409.png
                gene_name: CADM1
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 60 percent done.
CALD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.499718e-02	ci left: 5.465975e-01	ci right 5.661697e-01	k: 5564	n:10000
Cons ci ratio: 5.526715e-02	ci left: 3.253512e-01	ci right 3.439452e-01	k: 3346	n:10000
KS ci ratio: 1.277098e-02	ci left: 8.981605e-01	ci right 9.098029e-01	k: 9041	n:10000
CALD1   10000 perm   2 sec   (6067 perm/sec)   p_kst 9.041000e-01   p_cons 3.346000e-01   p_joint 5.564000e-01

Outputting figure to mutsig2_images.part000000000029/CALD1.2_2491_10000_0.9041_0.3346_0.5564.png
                gene_name: CALD1
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 62 percent done.
CALML5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.471812e-02	ci left: 2.596344e-01	ci right 2.771008e-01	k: 2683	n:10000
Cons ci ratio: 8.925190e-02	ci left: 1.544350e-01	ci right 1.689626e-01	k: 1616	n:10000
KS ci ratio: 6.228728e-02	ci left: 2.747796e-01	ci right 2.925466e-01	k: 2836	n:10000
CALML5   10000 perm   1 sec   (6923 perm/sec)   p_kst 2.836000e-01   p_cons 1.616000e-01   p_joint 2.683000e-01

Outputting figure to mutsig2_images.part000000000029/CALML5.2_445_10000_0.2836_0.1616_0.2683.png
                gene_name: CALML5
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 64 percent done.
CAMK2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.724192e-02	ci left: 6.650151e-01	ci right 6.834832e-01	k: 6743	n:10000
KS ci ratio: 1.964358e-02	ci left: 7.913132e-01	ci right 8.071121e-01	k: 7993	n:10000
CAMK2B   10000 perm   2 sec   (5982 perm/sec)   p_kst 7.993000e-01   p_cons 6.743000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000029/CAMK2B.2_2096_10000_0.7993_0.6743_1.png
                gene_name: CAMK2B
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
CAMLG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.508764e-02	ci left: 4.206670e-01	ci right 4.401735e-01	k: 4304	n:10000
Cons ci ratio: 3.628610e-03	ci left: 9.896106e-01	ci right 9.932945e-01	k: 9916	n:10000
KS ci ratio: 5.473782e-02	ci left: 3.296208e-01	ci right 3.482731e-01	k: 3389	n:10000
CAMLG   10000 perm   2 sec   (6554 perm/sec)   p_kst 3.389000e-01   p_cons 9.916000e-01   p_joint 4.304000e-01

Outputting figure to mutsig2_images.part000000000029/CAMLG.2_907_10000_0.3389_0.9916_0.4304.png
                gene_name: CAMLG
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 69 percent done.
CAMTA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.170407e-02	ci left: 5.948373e-01	ci right 6.141018e-01	k: 6045	n:10000
Cons ci ratio: 1.481906e-02	ci left: 8.683587e-01	ci right 8.814221e-01	k: 8750	n:10000
KS ci ratio: 5.575464e-02	ci left: 3.214794e-01	ci right 3.400192e-01	k: 3307	n:10000
CAMTA2   10000 perm   2 sec   (5429 perm/sec)   p_kst 3.307000e-01   p_cons 8.750000e-01   p_joint 6.045000e-01

Outputting figure to mutsig2_images.part000000000029/CAMTA2.2_3861_10000_0.3307_0.875_0.6045.png
                gene_name: CAMTA2
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 71 percent done.
CANX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.341096e-02	ci left: 1.733008e-01	ci right 1.884856e-01	k: 1808	n:10000
Cons ci ratio: 3.230402e-02	ci left: 5.858039e-01	ci right 6.051404e-01	k: 5955	n:10000
KS ci ratio: 1.174650e-01	ci left: 9.428457e-02	ci right 1.061495e-01	k: 1001	n:10000
CANX   10000 perm   2 sec   (5794 perm/sec)   p_kst 1.001000e-01   p_cons 5.955000e-01   p_joint 1.808000e-01

Joint ci ratio: 5.209316e-02	ci left: 2.148693e-01	ci right 2.264121e-01	k: 4412	n:20000
Cons ci ratio: 2.279390e-02	ci left: 5.897123e-01	ci right 6.033597e-01	k: 11931	n:20000
KS ci ratio: 8.433034e-02	ci left: 9.337356e-02	ci right 1.016439e-01	k: 1949	n:20000
CANX   20000 perm   4 sec   (5211 perm/sec)   p_kst 9.745000e-02   p_cons 5.965500e-01   p_joint 2.206000e-01

Outputting figure to mutsig2_images.part000000000029/CANX.2_1835_20000_0.09745_0.59655_0.2206.png
                gene_name: CANX
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.097 
        ci_ks_bounds_left: 0.093 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 74 percent done.
CAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.796419e-02	ci left: 6.533372e-01	ci right 6.719680e-01	k: 6627	n:10000
Cons ci ratio: 4.364630e-02	ci left: 4.366235e-01	ci right 4.562078e-01	k: 4464	n:10000
KS ci ratio: 3.430079e-02	ci left: 5.565186e-01	ci right 5.760428e-01	k: 5663	n:10000
CAP1   10000 perm   2 sec   (6276 perm/sec)   p_kst 5.663000e-01   p_cons 4.464000e-01   p_joint 6.627000e-01

Outputting figure to mutsig2_images.part000000000029/CAP1.2_1476_10000_0.5663_0.4464_0.6627.png
                gene_name: CAP1
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 76 percent done.
CAPG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.351152e-02	ci left: 5.679478e-01	ci right 5.874070e-01	k: 5777	n:10000
Cons ci ratio: 1.740181e-02	ci left: 8.279846e-01	ci right 8.426195e-01	k: 8354	n:10000
KS ci ratio: 4.608541e-02	ci left: 4.100020e-01	ci right 4.294448e-01	k: 4197	n:10000
CAPG   10000 perm   2 sec   (6383 perm/sec)   p_kst 4.197000e-01   p_cons 8.354000e-01   p_joint 5.777000e-01

Outputting figure to mutsig2_images.part000000000029/CAPG.2_1083_10000_0.4197_0.8354_0.5777.png
                gene_name: CAPG
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 79 percent done.
CAPN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.879503e-02	ci left: 8.053187e-01	ci right 8.206985e-01	k: 8131	n:10000
Cons ci ratio: 5.143806e-02	ci left: 3.578414e-01	ci right 3.768359e-01	k: 3673	n:10000
KS ci ratio: 3.541019e-02	ci left: 5.407869e-01	ci right 5.603836e-01	k: 5506	n:10000
CAPN1   10000 perm   2 sec   (5863 perm/sec)   p_kst 5.506000e-01   p_cons 3.673000e-01   p_joint 8.131000e-01

Outputting figure to mutsig2_images.part000000000029/CAPN1.2_2229_10000_0.5506_0.3673_0.8131.png
                gene_name: CAPN1
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 81 percent done.
CAPN11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.015541e-02	ci left: 1.852067e-01	ci right 2.007725e-01	k: 1929	n:10000
Cons ci ratio: 1.495306e-01	ci left: 5.947341e-02	ci right 6.918228e-02	k: 642	n:10000
KS ci ratio: 1.104622e-02	ci left: 9.212101e-01	ci right 9.315399e-01	k: 9265	n:10000
CAPN11   10000 perm   2 sec   (6153 perm/sec)   p_kst 9.265000e-01   p_cons 6.420000e-02   p_joint 1.929000e-01

Joint ci ratio: 6.263858e-02	ci left: 1.585963e-01	ci right 1.689017e-01	k: 3274	n:20000
Cons ci ratio: 1.045255e-01	ci left: 6.225587e-02	ci right 6.917105e-02	k: 1313	n:20000
KS ci ratio: 7.857599e-03	ci left: 9.219270e-01	ci right 9.292487e-01	k: 18513	n:20000
CAPN11   20000 perm   4 sec   (5472 perm/sec)   p_kst 9.256500e-01   p_cons 6.565000e-02   p_joint 1.637000e-01

Joint ci ratio: 4.382127e-02	ci left: 2.059315e-01	ci right 2.151913e-01	k: 6316	n:30000
Cons ci ratio: 8.253425e-02	ci left: 6.703978e-02	ci right 7.284384e-02	k: 2097	n:30000
KS ci ratio: 6.389542e-03	ci left: 9.231834e-01	ci right 9.291338e-01	k: 27786	n:30000
CAPN11   30000 perm   6 sec   (5135 perm/sec)   p_kst 9.262000e-01   p_cons 6.990000e-02   p_joint 2.105333e-01

Outputting figure to mutsig2_images.part000000000029/CAPN11.2_2312_30000_0.9262_0.0699_0.21053.png
                gene_name: CAPN11
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.070 
      ci_cons_bounds_left: 0.067 
     ci_cons_bounds_right: 0.073 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 83 percent done.
CAPN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.835253e-02	ci left: 3.868937e-01	ci right 4.061666e-01	k: 3965	n:10000
Cons ci ratio: 3.303319e-02	ci left: 5.749683e-01	ci right 5.943823e-01	k: 5847	n:10000
KS ci ratio: 6.178537e-02	ci left: 2.780479e-01	ci right 2.958764e-01	k: 2869	n:10000
CAPN2   10000 perm   2 sec   (6033 perm/sec)   p_kst 2.869000e-01   p_cons 5.847000e-01   p_joint 3.965000e-01

Outputting figure to mutsig2_images.part000000000029/CAPN2.2_2194_10000_0.2869_0.5847_0.3965.png
                gene_name: CAPN2
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 86 percent done.
CAPN5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.004989e-02	ci left: 4.793568e-01	ci right 4.990495e-01	k: 4892	n:10000
KS ci ratio: 4.109773e-02	ci left: 4.664693e-01	ci right 4.861445e-01	k: 4763	n:10000
CAPN5   10000 perm   2 sec   (6167 perm/sec)   p_kst 4.763000e-01   p_cons 4.892000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000029/CAPN5.2_1971_10000_0.4763_0.4892_1.png
                gene_name: CAPN5
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
CAPSL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.825115e-02	ci left: 3.025284e-01	ci right 3.207814e-01	k: 3116	n:10000
Cons ci ratio: 4.578402e-02	ci left: 4.131910e-01	ci right 4.326539e-01	k: 4229	n:10000
KS ci ratio: 1.308937e-01	ci left: 7.688883e-02	ci right 8.775595e-02	k: 822	n:10000
CAPSL   10000 perm   1 sec   (7083 perm/sec)   p_kst 8.220000e-02   p_cons 4.229000e-01   p_joint 3.116000e-01

Joint ci ratio: 6.053959e-02	ci left: 1.680276e-01	ci right 1.785675e-01	k: 3465	n:20000
Cons ci ratio: 3.392374e-02	ci left: 3.934995e-01	ci right 4.071295e-01	k: 8006	n:20000
KS ci ratio: 9.108822e-02	ci left: 8.087673e-02	ci right 8.864449e-02	k: 1694	n:20000
CAPSL   20000 perm   3 sec   (6221 perm/sec)   p_kst 8.470000e-02   p_cons 4.003000e-01   p_joint 1.732500e-01

Outputting figure to mutsig2_images.part000000000029/CAPSL.2_643_20000_0.0847_0.4003_0.17325.png
                gene_name: CAPSL
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.085 
        ci_ks_bounds_left: 0.081 
       ci_ks_bounds_right: 0.089 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 90 percent done.
CAPZA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.586887e-02	ci left: 6.874832e-01	ci right 7.056022e-01	k: 6966	n:10000
Cons ci ratio: 4.450408e-02	ci left: 4.270484e-01	ci right 4.465885e-01	k: 4368	n:10000
KS ci ratio: 3.297202e-02	ci left: 5.758711e-01	ci right 5.952790e-01	k: 5856	n:10000
CAPZA1   10000 perm   1 sec   (6675 perm/sec)   p_kst 5.856000e-01   p_cons 4.368000e-01   p_joint 6.966000e-01

Outputting figure to mutsig2_images.part000000000029/CAPZA1.2_901_10000_0.5856_0.4368_0.6966.png
                gene_name: CAPZA1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 93 percent done.
CAPZA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.461249e-02	ci left: 1.691711e-01	ci right 1.842178e-01	k: 1766	n:10000
Cons ci ratio: 1.020373e-01	ci left: 1.219999e-01	ci right 1.352172e-01	k: 1285	n:10000
KS ci ratio: 6.032345e-02	ci left: 2.878562e-01	ci right 3.058623e-01	k: 2968	n:10000
CAPZA3   10000 perm   1 sec   (6676 perm/sec)   p_kst 2.968000e-01   p_cons 1.285000e-01   p_joint 1.766000e-01

Joint ci ratio: 5.192711e-02	ci left: 2.159589e-01	ci right 2.275221e-01	k: 4434	n:20000
Cons ci ratio: 7.117140e-02	ci left: 1.269929e-01	ci right 1.364144e-01	k: 2633	n:20000
KS ci ratio: 4.278847e-02	ci left: 2.892313e-01	ci right 3.019281e-01	k: 5911	n:20000
CAPZA3   20000 perm   3 sec   (5880 perm/sec)   p_kst 2.955500e-01   p_cons 1.316500e-01   p_joint 2.217000e-01

Outputting figure to mutsig2_images.part000000000029/CAPZA3.2_904_20000_0.29555_0.13165_0.2217.png
                gene_name: CAPZA3
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 95 percent done.
CARD10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.424497e-02	ci left: 5.573205e-01	ci right 5.768404e-01	k: 5671	n:10000
Cons ci ratio: 1.155646e-02	ci left: 9.146125e-01	ci right 9.253413e-01	k: 9201	n:10000
KS ci ratio: 1.126523e-01	ci left: 1.018840e-01	ci right 1.141454e-01	k: 1079	n:10000
CARD10   10000 perm   2 sec   (5580 perm/sec)   p_kst 1.079000e-01   p_cons 9.201000e-01   p_joint 5.671000e-01

Joint ci ratio: 3.145272e-02	ci left: 4.302101e-01	ci right 4.440082e-01	k: 8742	n:20000
Cons ci ratio: 7.973950e-03	ci left: 9.198316e-01	ci right 9.272447e-01	k: 18472	n:20000
KS ci ratio: 7.963807e-02	ci left: 1.037306e-01	ci right 1.123837e-01	k: 2160	n:20000
CARD10   20000 perm   4 sec   (4960 perm/sec)   p_kst 1.080000e-01   p_cons 9.236000e-01   p_joint 4.371000e-01

Outputting figure to mutsig2_images.part000000000029/CARD10.2_3179_20000_0.108_0.9236_0.4371.png
                gene_name: CARD10
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.44 

Current progress: 98 percent done.
CARD8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.288510e-02	ci left: 3.451178e-01	ci right 3.639670e-01	k: 3545	n:10000
KS ci ratio: 4.227754e-02	ci left: 4.523904e-01	ci right 4.720316e-01	k: 4622	n:10000
CARD8   10000 perm   2 sec   (6125 perm/sec)   p_kst 4.622000e-01   p_cons 3.545000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000029/CARD8.2_1662_10000_0.4622_0.3545_1.png
                gene_name: CARD8
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000029
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 29 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1419>
Subject: Job 8003939: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1419>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000030> was used as the working directory.
Started at Sun Nov 11 15:04:32 2012
Results reported at Sun Nov 11 15:46:01 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000030.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000030.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 30  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000030.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   2790.86 sec.
    Max Memory :      4811 MB
    Max Swap   :      7192 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
30
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 30
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 30: processing genes 2625 - 2714
Calculating significance of each gene.
Using projection method.
2625	CARD9	1
2626	CARHSP1	2.904853e-01
2627	CARKD	4.581121e-01
2628	CARM1	8.330197e-01
2629	CARNS1	5.150389e-01
2630	CARS	2.343639e-02
2631	CARS2	8.607368e-01
2632	CARTPT	2.268901e-01
2633	CASC1	1
2634	CASC3	1
2635	CASC4	2.378752e-01
2636	CASC5	8.891374e-01
2637	CASD1	1.954257e-02
2638	CASK	9.339255e-01
2639	CASKIN1	7.536970e-01
2640	CASKIN2	9.561930e-01
2641	CASP1	5.855628e-01
2642	CASP10	5.056814e-01
2643	CASP14	1
2644	CASP2	8.132052e-01
2645	CASP3	1
2646	CASP4	4.499229e-02
2647	CASP5	1.515276e-01
2648	CASP6	1
2649	CASP7	4.243514e-01
2650	CASP8	5.275191e-01
2651	CASP8AP2	8.935954e-01
2652	CASP9	8.346860e-01
2653	CASQ1	6.361628e-01
2654	CASQ2	2.344555e-01
2655	CASR	4.893679e-02
2656	CASS4	1
2657	CAST	4.995890e-01
2658	CASZ1	9.969231e-01
2659	CAT	1
2660	CATSPER1	9.153147e-01
2661	CATSPER2	6.547359e-01
2662	CATSPER3	5.058678e-01
2663	CATSPER4	8.380703e-01
2664	CATSPERB	1
2665	CATSPERG	2.479467e-01
2666	CAV1	1
2667	CAV2	5.218726e-01
2668	CAV3	4.876654e-01
2669	CBARA1	4.994883e-01
2670	CBFA2T2	9.245918e-01
2671	CBFA2T3	5.541863e-01
2672	CBFB	3.628678e-01
2673	CBL	1
2674	CBLB	9.536118e-02
2675	CBLC	1
2676	CBLL1	1.109756e-01
2677	CBLN1	4.421473e-01
2678	CBLN2	5.858122e-03
2679	CBLN3	1.171216e-01
2680	CBLN4	1.095875e-03
2681	CBR1	1
2682	CBR3	1
2683	CBR4	1
2684	CBS	4.089456e-01
2685	CBWD1	1
2686	CBWD2	6.800917e-01
2687	CBWD6	1.102887e-01
2688	CBX1	1
2689	CBX2	9.516928e-01
2690	CBX3	1
2691	CBX4	6.852172e-01
2692	CBX5	1
2693	CBX6	1
2694	CBX7	5.270942e-01
2695	CBX8	3.149922e-01
2696	CBY1	1
2697	CC2D1A	9.677292e-01
2698	CC2D1B	8.754743e-01
2699	CC2D2A	9.900447e-01
2700	CC2D2B	1
2701	CCAR1	5.282303e-01
2702	CCBE1	2.100588e-01
2703	CCBL1	8.521859e-01
2704	CCBL2	1
2705	CCBP2	4.505284e-02
2706	CCDC101	7.210746e-01
2707	CCDC102A	4.604434e-01
2708	CCDC102B	6.878747e-01
2709	CCDC103	1
2710	CCDC104	5.805479e-01
2711	CCDC105	1.814509e-02
2712	CCDC106	1
2713	CCDC107	1
2714	CCDC108	6.079168e-01
Done

Running MutSig 2:
Scatter job 30: processing genes 2625 - 2714
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CASR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.314023e-02	ci left: 3.429316e-01	ci right 3.617544e-01	k: 3523	n:10000
Cons ci ratio: 8.767228e-02	ci left: 1.592465e-01	ci right 1.739483e-01	k: 1665	n:10000
KS ci ratio: 3.812710e-02	ci left: 5.039511e-01	ci right 5.236409e-01	k: 5138	n:10000
CASR   10000 perm   3 sec   (3887 perm/sec)   p_kst 5.138000e-01   p_cons 1.665000e-01   p_joint 3.523000e-01

Outputting figure to mutsig2_images.part000000000030/CASR.11_3291_10000_0.5138_0.1665_0.3523.png
                gene_name: CASR
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 2 percent done.
CCDC108
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.977477e-02	ci left: 6.245712e-01	ci right 6.435506e-01	k: 6341	n:10000
Cons ci ratio: 2.497253e-02	ci left: 7.023076e-01	ci right 7.201692e-01	k: 7113	n:10000
KS ci ratio: 4.927397e-02	ci left: 3.779354e-01	ci right 3.971302e-01	k: 3875	n:10000
CCDC108   10000 perm   3 sec   (3521 perm/sec)   p_kst 3.875000e-01   p_cons 7.113000e-01   p_joint 6.341000e-01

Outputting figure to mutsig2_images.part000000000030/CCDC108.11_6058_10000_0.3875_0.7113_0.6341.png
                gene_name: CCDC108
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 4 percent done.
CARS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.725800e-03	ci left: 9.762092e-01	ci right 9.819069e-01	k: 9792	n:10000
KS ci ratio: 1.675240e-02	ci left: 8.383675e-01	ci right 8.526306e-01	k: 8456	n:10000
CARS   10000 perm   2 sec   (4473 perm/sec)   p_kst 8.456000e-01   p_cons 9.792000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000030/CARS.8_2643_10000_0.8456_0.9792_1.png
                gene_name: CARS
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 7 percent done.
CASD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.842359e-01	ci left: 8.324320e-03	ci right 1.236857e-02	k: 102	n:10000
Cons ci ratio: 1.224140e-01	ci left: 8.727953e-02	ci right 9.875882e-02	k: 929	n:10000
KS ci ratio: 4.160103e-01	ci left: 6.974044e-03	ci right 1.072050e-02	k: 87	n:10000
CASD1   10000 perm   2 sec   (4569 perm/sec)   p_kst 8.700000e-03   p_cons 9.290000e-02   p_joint 1.020000e-02

Joint ci ratio: 4.012173e-01	ci left: 3.799699e-03	ci right 5.748583e-03	k: 94	n:20000
Cons ci ratio: 8.478879e-02	ci left: 9.244163e-02	ci right 1.006761e-01	k: 1930	n:20000
KS ci ratio: 2.900427e-01	ci left: 7.737913e-03	ci right 1.040775e-02	k: 180	n:20000
CASD1   20000 perm   5 sec   (4104 perm/sec)   p_kst 9.000000e-03   p_cons 9.650000e-02   p_joint 4.700000e-03

Joint ci ratio: 1.987540e-01	ci left: 1.152696e-02	ci right 1.410200e-02	k: 383	n:30000
Cons ci ratio: 7.048281e-02	ci left: 9.016279e-02	ci right 9.678284e-02	k: 2803	n:30000
KS ci ratio: 2.488992e-01	ci left: 7.179429e-03	ci right 9.250843e-03	k: 245	n:30000
CASD1   30000 perm   8 sec   (3978 perm/sec)   p_kst 8.166667e-03   p_cons 9.343333e-02   p_joint 1.276667e-02

Joint ci ratio: 1.880181e-01	ci left: 9.738713e-03	ci right 1.178324e-02	k: 429	n:40000
Cons ci ratio: 6.112732e-02	ci left: 9.036817e-02	ci right 9.609104e-02	k: 3728	n:40000
KS ci ratio: 2.172295e-01	ci left: 7.197650e-03	ci right 8.974878e-03	k: 322	n:40000
CASD1   40000 perm   10 sec   (3881 perm/sec)   p_kst 8.050000e-03   p_cons 9.320000e-02   p_joint 1.072500e-02

Joint ci ratio: 1.773156e-01	ci left: 8.821240e-03	ci right 1.055640e-02	k: 483	n:50000
Cons ci ratio: 5.465626e-02	ci left: 9.072477e-02	ci right 9.584257e-02	k: 4663	n:50000
KS ci ratio: 1.954589e-01	ci left: 7.199768e-03	ci right 8.778158e-03	k: 398	n:50000
CASD1   50000 perm   13 sec   (3799 perm/sec)   p_kst 7.960000e-03   p_cons 9.326000e-02   p_joint 9.660000e-03

Joint ci ratio: 1.382792e-01	ci left: 1.230205e-02	ci right 1.414548e-02	k: 792	n:60000
Cons ci ratio: 5.002144e-02	ci left: 9.052270e-02	ci right 9.518343e-02	k: 5570	n:60000
KS ci ratio: 1.780173e-01	ci left: 7.302736e-03	ci right 8.745461e-03	k: 480	n:60000
CASD1   60000 perm   16 sec   (3727 perm/sec)   p_kst 8.000000e-03   p_cons 9.283333e-02   p_joint 1.320000e-02

Joint ci ratio: 1.400279e-01	ci left: 1.029567e-02	ci right 1.185954e-02	k: 774	n:70000
Cons ci ratio: 4.625796e-02	ci left: 9.088652e-02	ci right 9.520443e-02	k: 6512	n:70000
KS ci ratio: 1.646889e-01	ci left: 7.367083e-03	ci right 8.702753e-03	k: 561	n:70000
CASD1   70000 perm   19 sec   (3662 perm/sec)   p_kst 8.014286e-03   p_cons 9.302857e-02   p_joint 1.105714e-02

Joint ci ratio: 1.325607e-01	ci left: 1.009530e-02	ci right 1.154051e-02	k: 864	n:80000
Cons ci ratio: 4.328459e-02	ci left: 9.097122e-02	ci right 9.500835e-02	k: 7438	n:80000
KS ci ratio: 1.518382e-01	ci left: 7.634831e-03	ci right 8.901218e-03	k: 660	n:80000
CASD1   80000 perm   22 sec   (3598 perm/sec)   p_kst 8.250000e-03   p_cons 9.297500e-02   p_joint 1.080000e-02

Joint ci ratio: 1.275983e-01	ci left: 9.715195e-03	ci right 1.104998e-02	k: 933	n:90000
Cons ci ratio: 4.091668e-02	ci left: 9.064775e-02	ci right 9.444522e-02	k: 8328	n:90000
KS ci ratio: 1.437036e-01	ci left: 7.610447e-03	ci right 8.799357e-03	k: 737	n:90000
CASD1   90000 perm   25 sec   (3543 perm/sec)   p_kst 8.188889e-03   p_cons 9.253333e-02   p_joint 1.036667e-02

Joint ci ratio: 1.230290e-01	ci left: 9.431335e-03	ci right 1.067733e-02	k: 1004	n:100000
Cons ci ratio: 3.889681e-02	ci left: 9.040382e-02	ci right 9.399988e-02	k: 9219	n:100000
KS ci ratio: 1.370898e-01	ci left: 7.553753e-03	ci right 8.675060e-03	k: 810	n:100000
CASD1   100000 perm   29 sec   (3484 perm/sec)   p_kst 8.100000e-03   p_cons 9.219000e-02   p_joint 1.004000e-02

Joint ci ratio: 1.219279e-01	ci left: 8.741185e-03	ci right 9.884911e-03	k: 1023	n:110000
Cons ci ratio: 3.699432e-02	ci left: 9.090223e-02	ci right 9.433747e-02	k: 10187	n:110000
KS ci ratio: 1.299123e-01	ci left: 7.675522e-03	ci right 8.750649e-03	k: 902	n:110000
CASD1   110000 perm   32 sec   (3430 perm/sec)   p_kst 8.200000e-03   p_cons 9.260909e-02   p_joint 9.300000e-03

Joint ci ratio: 1.315819e-01	ci left: 6.858366e-03	ci right 7.832336e-03	k: 880	n:120000
Cons ci ratio: 3.545839e-02	ci left: 9.079202e-02	ci right 9.407771e-02	k: 11091	n:120000
KS ci ratio: 1.217361e-01	ci left: 8.044893e-03	ci right 9.095731e-03	k: 1027	n:120000
CASD1   120000 perm   35 sec   (3381 perm/sec)   p_kst 8.558333e-03   p_cons 9.242500e-02   p_joint 7.333333e-03

Joint ci ratio: 1.337767e-01	ci left: 6.122407e-03	ci right 7.007512e-03	k: 852	n:130000
Cons ci ratio: 3.488818e-02	ci left: 8.696905e-02	ci right 9.006472e-02	k: 11506	n:130000
KS ci ratio: 1.168898e-01	ci left: 8.075323e-03	ci right 9.085242e-03	k: 1114	n:130000
CASD1   130000 perm   39 sec   (3330 perm/sec)   p_kst 8.569231e-03   p_cons 8.850769e-02   p_joint 6.553846e-03

Joint ci ratio: 1.187650e-01	ci left: 7.262633e-03	ci right 8.186503e-03	k: 1080	n:140000
Cons ci ratio: 3.367003e-02	ci left: 8.678328e-02	ci right 8.976237e-02	k: 12357	n:140000
KS ci ratio: 1.122504e-01	ci left: 8.150723e-03	ci right 9.126935e-03	k: 1208	n:140000
CASD1   140000 perm   43 sec   (3283 perm/sec)   p_kst 8.628571e-03   p_cons 8.826429e-02   p_joint 7.714286e-03

Joint ci ratio: 1.173288e-01	ci left: 6.953076e-03	ci right 7.826128e-03	k: 1107	n:150000
Cons ci ratio: 3.251988e-02	ci left: 8.687540e-02	ci right 8.975387e-02	k: 13246	n:150000
KS ci ratio: 1.086287e-01	ci left: 8.138905e-03	ci right 9.080237e-03	k: 1290	n:150000
CASD1   150000 perm   46 sec   (3237 perm/sec)   p_kst 8.600000e-03   p_cons 8.830667e-02   p_joint 7.380000e-03

Joint ci ratio: 1.243258e-01	ci left: 5.790938e-03	ci right 6.564620e-03	k: 987	n:160000
Cons ci ratio: 2.925489e-02	ci left: 9.941586e-02	ci right 1.023736e-01	k: 16142	n:160000
KS ci ratio: 1.056082e-01	ci left: 8.086404e-03	ci right 8.994040e-03	k: 1365	n:160000
CASD1   160000 perm   50 sec   (3192 perm/sec)   p_kst 8.531250e-03   p_cons 1.008875e-01   p_joint 6.168750e-03

Joint ci ratio: 1.218909e-01	ci left: 5.678323e-03	ci right 6.421027e-03	k: 1027	n:170000
Cons ci ratio: 2.837675e-02	ci left: 9.948964e-02	ci right 1.023593e-01	k: 17156	n:170000
KS ci ratio: 1.025754e-01	ci left: 8.080527e-03	ci right 8.959887e-03	k: 1447	n:170000
CASD1   170000 perm   54 sec   (3149 perm/sec)   p_kst 8.511765e-03   p_cons 1.009176e-01   p_joint 6.041176e-03

Joint ci ratio: 9.812162e-02	ci left: 8.357433e-03	ci right 9.225165e-03	k: 1581	n:180000
Cons ci ratio: 2.760365e-02	ci left: 9.935763e-02	ci right 1.021441e-01	k: 18134	n:180000
KS ci ratio: 9.949494e-02	ci left: 8.124399e-03	ci right 8.980431e-03	k: 1538	n:180000
CASD1   180000 perm   58 sec   (3104 perm/sec)   p_kst 8.544444e-03   p_cons 1.007444e-01   p_joint 8.783333e-03

Outputting figure to mutsig2_images.part000000000030/CASD1.8_2466_180000_0.0085444_0.10074_0.0087833.png
                gene_name: CASD1
               theta_stop: 0.099 
                    nperm: 180000 
                     p_ks: 0.0085 
        ci_ks_bounds_left: 0.0081 
       ci_ks_bounds_right: 0.0090 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.099 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.0088 
     ci_joint_bounds_left: 0.0084 
    ci_joint_bounds_right: 0.0092 

Current progress: 9 percent done.
CASS4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.147127e-02	ci left: 3.575431e-01	ci right 3.765344e-01	k: 3670	n:10000
Cons ci ratio: 7.090890e-03	ci left: 9.647821e-01	ci right 9.717416e-01	k: 9684	n:10000
KS ci ratio: 7.961909e-02	ci left: 1.872743e-01	ci right 2.029038e-01	k: 1950	n:10000
CASS4   10000 perm   2 sec   (4854 perm/sec)   p_kst 1.950000e-01   p_cons 9.684000e-01   p_joint 3.670000e-01

Outputting figure to mutsig2_images.part000000000030/CASS4.8_2385_10000_0.195_0.9684_0.367.png
                gene_name: CASS4
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 11 percent done.
CASC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.691388e-02	ci left: 6.703529e-01	ci right 6.887424e-01	k: 6796	n:10000
Cons ci ratio: 6.395245e-02	ci left: 2.642855e-01	ci right 2.818469e-01	k: 2730	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
CASC5   10000 perm   3 sec   (3230 perm/sec)   p_kst 1   p_cons 2.730000e-01   p_joint 6.796000e-01

Outputting figure to mutsig2_images.part000000000030/CASC5.7_7133_10000_1_0.273_0.6796.png
                gene_name: CASC5
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 13 percent done.
CBLB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.400848e-02	ci left: 5.607287e-01	ci right 5.802302e-01	k: 5705	n:10000
Cons ci ratio: 9.371625e-02	ci left: 1.418777e-01	ci right 1.559275e-01	k: 1488	n:10000
KS ci ratio: 2.642698e-02	ci left: 6.783117e-01	ci right 6.965790e-01	k: 6875	n:10000
CBLB   10000 perm   2 sec   (4278 perm/sec)   p_kst 6.875000e-01   p_cons 1.488000e-01   p_joint 5.705000e-01

Outputting figure to mutsig2_images.part000000000030/CBLB.7_3021_10000_0.6875_0.1488_0.5705.png
                gene_name: CBLB
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 15 percent done.
CASP8AP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.093398e-02	ci left: 7.698255e-01	ci right 7.862122e-01	k: 7781	n:10000
KS ci ratio: 8.625171e-03	ci left: 9.496057e-01	ci right 9.579274e-01	k: 9539	n:10000
CASP8AP2   10000 perm   3 sec   (3618 perm/sec)   p_kst 9.539000e-01   p_cons 7.781000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000030/CASP8AP2.6_5937_10000_0.9539_0.7781_1.png
                gene_name: CASP8AP2
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 17 percent done.
CBLN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 1.286912e-01	ci left: 7.941135e-02	ci right 9.043186e-02	k: 848	n:10000
KS ci ratio: 1.306013e+00	ci left: 3.454445e-04	ci right 1.575707e-03	k: 8	n:10000
CBLN4   10000 perm   2 sec   (6045 perm/sec)   p_kst 8.000000e-04   p_cons 8.480000e-02   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 9.361530e-02	ci left: 7.681453e-02	ci right 8.440792e-02	k: 1611	n:20000
KS ci ratio: 1.181570e+00	ci left: 2.397946e-04	ci right 9.193249e-04	k: 10	n:20000
CBLN4   20000 perm   4 sec   (5266 perm/sec)   p_kst 5.000000e-04   p_cons 8.055000e-02   p_joint 0

Joint ci ratio: 3.919869e+00	ci left: 0	ci right 1.229551e-04	k: 0	n:30000
Cons ci ratio: 7.648872e-02	ci left: 7.741266e-02	ci right 8.360220e-02	k: 2414	n:30000
KS ci ratio: 8.551005e-01	ci left: 4.072634e-04	ci right 1.029426e-03	k: 20	n:30000
CBLN4   30000 perm   6 sec   (4972 perm/sec)   p_kst 6.666667e-04   p_cons 8.046667e-02   p_joint 0

Joint ci ratio: 4.060072e-01	ci left: 1.854515e-03	ci right 2.820011e-03	k: 92	n:40000
Cons ci ratio: 6.614093e-02	ci left: 7.804879e-02	ci right 8.341226e-02	k: 3228	n:40000
KS ci ratio: 7.154134e-01	ci left: 4.855960e-04	ci right 1.041056e-03	k: 29	n:40000
CBLN4   40000 perm   8 sec   (4791 perm/sec)   p_kst 7.250000e-04   p_cons 8.070000e-02   p_joint 2.300000e-03

Joint ci ratio: 4.175014e-01	ci left: 1.393896e-03	ci right 2.145847e-03	k: 87	n:50000
Cons ci ratio: 5.923223e-02	ci left: 7.814941e-02	ci right 8.293942e-02	k: 4026	n:50000
KS ci ratio: 6.356599e-01	ci left: 5.210801e-04	ci right 1.019850e-03	k: 37	n:50000
CBLN4   50000 perm   11 sec   (4668 perm/sec)   p_kst 7.400000e-04   p_cons 8.052000e-02   p_joint 1.740000e-03

Joint ci ratio: 3.997598e-01	ci left: 1.281194e-03	ci right 1.935202e-03	k: 95	n:60000
Cons ci ratio: 5.388612e-02	ci left: 7.886180e-02	ci right 8.324549e-02	k: 4862	n:60000
KS ci ratio: 6.119868e-01	ci left: 4.763178e-04	ci right 9.077013e-04	k: 40	n:60000
CBLN4   60000 perm   13 sec   (4559 perm/sec)   p_kst 6.666667e-04   p_cons 8.103333e-02   p_joint 1.583333e-03

Joint ci ratio: 3.786683e-01	ci left: 1.239934e-03	ci right 1.831194e-03	k: 106	n:70000
Cons ci ratio: 4.983873e-02	ci left: 7.917270e-02	ci right 8.323353e-02	k: 5683	n:70000
KS ci ratio: 5.656052e-01	ci left: 4.933809e-04	ci right 8.927588e-04	k: 47	n:70000
CBLN4   70000 perm   16 sec   (4438 perm/sec)   p_kst 6.714286e-04   p_cons 8.118571e-02   p_joint 1.514286e-03

Joint ci ratio: 4.898009e-01	ci left: 6.051880e-04	ci right 1.007444e-03	k: 63	n:80000
Cons ci ratio: 4.652642e-02	ci left: 7.960066e-02	ci right 8.340476e-02	k: 6519	n:80000
KS ci ratio: 5.058769e-01	ci left: 5.614651e-04	ci right 9.512195e-04	k: 59	n:80000
CBLN4   80000 perm   18 sec   (4354 perm/sec)   p_kst 7.375000e-04   p_cons 8.148750e-02   p_joint 7.875000e-04

Joint ci ratio: 2.427553e-01	ci left: 2.538361e-03	ci right 3.249835e-03	k: 259	n:90000
Cons ci ratio: 4.383628e-02	ci left: 7.980845e-02	ci right 8.339635e-02	k: 7343	n:90000
KS ci ratio: 4.524515e-01	ci left: 6.456747e-04	ci right 1.032116e-03	k: 74	n:90000
CBLN4   90000 perm   21 sec   (4255 perm/sec)   p_kst 8.222222e-04   p_cons 8.158889e-02   p_joint 2.877778e-03

Joint ci ratio: 2.522037e-01	ci left: 2.106243e-03	ci right 2.723185e-03	k: 240	n:100000
Cons ci ratio: 4.162844e-02	ci left: 7.975196e-02	ci right 8.315237e-02	k: 8144	n:100000
KS ci ratio: 4.327119e-01	ci left: 6.433073e-04	ci right 1.006657e-03	k: 81	n:100000
CBLN4   100000 perm   24 sec   (4156 perm/sec)   p_kst 8.100000e-04   p_cons 8.144000e-02   p_joint 2.400000e-03

Joint ci ratio: 2.405124e-01	ci left: 2.119487e-03	ci right 2.707240e-03	k: 264	n:110000
Cons ci ratio: 3.970203e-02	ci left: 7.979056e-02	ci right 8.303155e-02	k: 8954	n:110000
KS ci ratio: 3.999069e-01	ci left: 6.987878e-04	ci right 1.055649e-03	k: 95	n:110000
CBLN4   110000 perm   27 sec   (4069 perm/sec)   p_kst 8.636364e-04   p_cons 8.140000e-02   p_joint 2.400000e-03

Joint ci ratio: 2.491658e-01	ci left: 1.802025e-03	ci right 2.322510e-03	k: 246	n:120000
Cons ci ratio: 3.811190e-02	ci left: 7.947055e-02	ci right 8.256640e-02	k: 9721	n:120000
KS ci ratio: 3.823838e-01	ci left: 7.081827e-04	ci right 1.050015e-03	k: 104	n:120000
CBLN4   120000 perm   30 sec   (3979 perm/sec)   p_kst 8.666667e-04   p_cons 8.100833e-02   p_joint 2.050000e-03

Joint ci ratio: 2.392042e-01	ci left: 1.815066e-03	ci right 2.315254e-03	k: 267	n:130000
Cons ci ratio: 3.661894e-02	ci left: 7.952239e-02	ci right 8.249633e-02	k: 10530	n:130000
KS ci ratio: 3.686009e-01	ci left: 7.094394e-04	ci right 1.036564e-03	k: 112	n:130000
CBLN4   130000 perm   33 sec   (3913 perm/sec)   p_kst 8.615385e-04   p_cons 8.100000e-02   p_joint 2.053846e-03

Joint ci ratio: 2.370169e-01	ci left: 1.718992e-03	ci right 2.187735e-03	k: 272	n:140000
Cons ci ratio: 3.526167e-02	ci left: 7.968222e-02	ci right 8.254944e-02	k: 11355	n:140000
KS ci ratio: 3.532979e-01	ci left: 7.237197e-04	ci right 1.040399e-03	k: 122	n:140000
CBLN4   140000 perm   36 sec   (3851 perm/sec)   p_kst 8.714286e-04   p_cons 8.110714e-02   p_joint 1.942857e-03

Joint ci ratio: 2.387914e-01	ci left: 1.579301e-03	ci right 2.013653e-03	k: 268	n:150000
Cons ci ratio: 3.410285e-02	ci left: 7.957115e-02	ci right 8.233841e-02	k: 12142	n:150000
KS ci ratio: 3.423413e-01	ci left: 7.241469e-04	ci right 1.029013e-03	k: 130	n:150000
CBLN4   150000 perm   40 sec   (3784 perm/sec)   p_kst 8.666667e-04   p_cons 8.094667e-02   p_joint 1.786667e-03

Joint ci ratio: 2.295847e-01	ci left: 1.610033e-03	ci right 2.033346e-03	k: 290	n:160000
Cons ci ratio: 3.301514e-02	ci left: 7.963659e-02	ci right 8.231611e-02	k: 12955	n:160000
KS ci ratio: 3.311545e-01	ci left: 7.303832e-04	ci right 1.025687e-03	k: 139	n:160000
CBLN4   160000 perm   43 sec   (3725 perm/sec)   p_kst 8.687500e-04   p_cons 8.096875e-02   p_joint 1.812500e-03

Joint ci ratio: 2.227976e-01	ci left: 1.615210e-03	ci right 2.025608e-03	k: 308	n:170000
Cons ci ratio: 3.205442e-02	ci left: 7.956128e-02	ci right 8.215892e-02	k: 13745	n:170000
KS ci ratio: 3.199245e-01	ci left: 7.414382e-04	ci right 1.028964e-03	k: 149	n:170000
CBLN4   170000 perm   46 sec   (3669 perm/sec)   p_kst 8.764706e-04   p_cons 8.085294e-02   p_joint 1.811765e-03

Joint ci ratio: 2.228089e-01	ci left: 1.525468e-03	ci right 1.913085e-03	k: 308	n:180000
Cons ci ratio: 3.118697e-02	ci left: 7.942915e-02	ci right 8.195104e-02	k: 14523	n:180000
KS ci ratio: 3.137143e-01	ci left: 7.309298e-04	ci right 1.007776e-03	k: 155	n:180000
CBLN4   180000 perm   50 sec   (3616 perm/sec)   p_kst 8.611111e-04   p_cons 8.068333e-02   p_joint 1.711111e-03

Joint ci ratio: 2.224588e-01	ci left: 1.450143e-03	ci right 1.817962e-03	k: 309	n:190000
Cons ci ratio: 3.038417e-02	ci left: 7.932225e-02	ci right 8.177477e-02	k: 15303	n:190000
KS ci ratio: 3.097719e-01	ci left: 7.118644e-04	ci right 9.774310e-04	k: 159	n:190000
CBLN4   190000 perm   53 sec   (3564 perm/sec)   p_kst 8.368421e-04   p_cons 8.054211e-02   p_joint 1.626316e-03

Joint ci ratio: 2.182766e-01	ci left: 1.434323e-03	ci right 1.790372e-03	k: 321	n:200000
Cons ci ratio: 2.955647e-02	ci left: 7.964396e-02	ci right 8.203820e-02	k: 16167	n:200000
KS ci ratio: 3.059743e-01	ci left: 6.947253e-04	ci right 9.501013e-04	k: 163	n:200000
CBLN4   200000 perm   57 sec   (3515 perm/sec)   p_kst 8.150000e-04   p_cons 8.083500e-02   p_joint 1.605000e-03

Joint ci ratio: 2.210524e-01	ci left: 1.330015e-03	ci right 1.664940e-03	k: 313	n:210000
Cons ci ratio: 2.881961e-02	ci left: 7.979865e-02	ci right 8.213674e-02	k: 17002	n:210000
KS ci ratio: 2.945203e-01	ci left: 7.188881e-04	ci right 9.714089e-04	k: 176	n:210000
CBLN4   210000 perm   61 sec   (3461 perm/sec)   p_kst 8.380952e-04   p_cons 8.096190e-02   p_joint 1.490476e-03

Joint ci ratio: 2.284657e-01	ci left: 1.183757e-03	ci right 1.493258e-03	k: 293	n:220000
Cons ci ratio: 2.810952e-02	ci left: 8.007543e-02	ci right 8.236289e-02	k: 17867	n:220000
KS ci ratio: 2.896535e-01	ci left: 7.114857e-04	ci right 9.565199e-04	k: 182	n:220000
CBLN4   220000 perm   64 sec   (3413 perm/sec)   p_kst 8.272727e-04   p_cons 8.121364e-02   p_joint 1.331818e-03

Joint ci ratio: 2.273141e-01	ci left: 1.144585e-03	ci right 1.442124e-03	k: 296	n:230000
Cons ci ratio: 2.749180e-02	ci left: 8.009979e-02	ci right 8.233686e-02	k: 18679	n:230000
KS ci ratio: 2.842686e-01	ci left: 7.087961e-04	ci right 9.475515e-04	k: 189	n:230000
CBLN4   230000 perm   68 sec   (3368 perm/sec)   p_kst 8.217391e-04   p_cons 8.121304e-02   p_joint 1.286957e-03

Joint ci ratio: 2.448688e-01	ci left: 9.361386e-04	ci right 1.201148e-03	k: 255	n:240000
Cons ci ratio: 2.695526e-02	ci left: 7.989073e-02	ci right 8.207774e-02	k: 19435	n:240000
KS ci ratio: 2.756936e-01	ci left: 7.257542e-04	ci right 9.615697e-04	k: 201	n:240000
CBLN4   240000 perm   72 sec   (3322 perm/sec)   p_kst 8.375000e-04   p_cons 8.097917e-02   p_joint 1.062500e-03

Joint ci ratio: 2.402222e-01	ci left: 9.362623e-04	ci right 1.195529e-03	k: 265	n:250000
Cons ci ratio: 2.641622e-02	ci left: 7.988168e-02	ci right 8.202405e-02	k: 20237	n:250000
KS ci ratio: 2.678504e-01	ci left: 7.414550e-04	ci right 9.743679e-04	k: 213	n:250000
CBLN4   250000 perm   76 sec   (3276 perm/sec)   p_kst 8.520000e-04   p_cons 8.094800e-02   p_joint 1.060000e-03

Joint ci ratio: 2.388825e-01	ci left: 9.110967e-04	ci right 1.161779e-03	k: 268	n:260000
Cons ci ratio: 2.586683e-02	ci left: 8.011079e-02	ci right 8.221395e-02	k: 21101	n:260000
KS ci ratio: 2.623895e-01	ci left: 7.452528e-04	ci right 9.738025e-04	k: 222	n:260000
CBLN4   260000 perm   80 sec   (3230 perm/sec)   p_kst 8.538462e-04   p_cons 8.115769e-02   p_joint 1.030769e-03

Joint ci ratio: 2.354087e-01	ci left: 9.052212e-04	ci right 1.150137e-03	k: 276	n:270000
Cons ci ratio: 2.538053e-02	ci left: 8.014659e-02	ci right 8.221056e-02	k: 21917	n:270000
KS ci ratio: 2.594982e-01	ci left: 7.349576e-04	ci right 9.574636e-04	k: 227	n:270000
CBLN4   270000 perm   85 sec   (3187 perm/sec)   p_kst 8.407407e-04   p_cons 8.117407e-02   p_joint 1.022222e-03

Joint ci ratio: 1.808568e-01	ci left: 1.523519e-03	ci right 1.829801e-03	k: 468	n:280000
Cons ci ratio: 2.490875e-02	ci left: 8.025121e-02	ci right 8.227890e-02	k: 22753	n:280000
KS ci ratio: 2.503296e-01	ci left: 7.655472e-04	ci right 9.878503e-04	k: 244	n:280000
CBLN4   280000 perm   89 sec   (3141 perm/sec)   p_kst 8.714286e-04   p_cons 8.126071e-02   p_joint 1.671429e-03

Joint ci ratio: 1.771187e-01	ci left: 1.536861e-03	ci right 1.838755e-03	k: 488	n:290000
Cons ci ratio: 2.448323e-02	ci left: 8.022206e-02	ci right 8.221390e-02	k: 23552	n:290000
KS ci ratio: 2.429987e-01	ci left: 7.876779e-04	ci right 1.008699e-03	k: 259	n:290000
CBLN4   290000 perm   94 sec   (3095 perm/sec)   p_kst 8.931034e-04   p_cons 8.121379e-02   p_joint 1.682759e-03

Joint ci ratio: 1.720859e-01	ci left: 1.578078e-03	ci right 1.878346e-03	k: 517	n:300000
Cons ci ratio: 2.407934e-02	ci left: 8.019182e-02	ci right 8.214961e-02	k: 24350	n:300000
KS ci ratio: 2.371408e-01	ci left: 8.021498e-04	ci right 1.021010e-03	k: 272	n:300000
CBLN4   300000 perm   98 sec   (3053 perm/sec)   p_kst 9.066667e-04   p_cons 8.116667e-02   p_joint 1.723333e-03

Joint ci ratio: 1.688562e-01	ci left: 1.588936e-03	ci right 1.885019e-03	k: 537	n:310000
Cons ci ratio: 2.367381e-02	ci left: 8.029533e-02	ci right 8.222218e-02	k: 25189	n:310000
KS ci ratio: 2.320936e-01	ci left: 8.127092e-04	ci right 1.029054e-03	k: 284	n:310000
CBLN4   310000 perm   103 sec   (3013 perm/sec)   p_kst 9.161290e-04   p_cons 8.125484e-02   p_joint 1.732258e-03

Joint ci ratio: 1.674635e-01	ci left: 1.566222e-03	ci right 1.855422e-03	k: 546	n:320000
Cons ci ratio: 2.330467e-02	ci left: 8.028695e-02	ci right 8.218315e-02	k: 25994	n:320000
KS ci ratio: 2.304837e-01	ci left: 7.990871e-04	ci right 1.010120e-03	k: 288	n:320000
CBLN4   320000 perm   108 sec   (2969 perm/sec)   p_kst 9.000000e-04   p_cons 8.123125e-02   p_joint 1.706250e-03

Joint ci ratio: 1.646283e-01	ci left: 1.573944e-03	ci right 1.859163e-03	k: 565	n:330000
Cons ci ratio: 2.295228e-02	ci left: 8.027929e-02	ci right 8.214626e-02	k: 26799	n:330000
KS ci ratio: 2.269766e-01	ci left: 8.005825e-04	ci right 1.008343e-03	k: 297	n:330000
CBLN4   330000 perm   113 sec   (2926 perm/sec)   p_kst 9.000000e-04   p_cons 8.120909e-02   p_joint 1.712121e-03

Joint ci ratio: 1.622103e-01	ci left: 1.575607e-03	ci right 1.856524e-03	k: 582	n:340000
Cons ci ratio: 2.262878e-02	ci left: 8.018450e-02	ci right 8.202264e-02	k: 27574	n:340000
KS ci ratio: 2.228993e-01	ci left: 8.075665e-04	ci right 1.012858e-03	k: 308	n:340000
CBLN4   340000 perm   118 sec   (2886 perm/sec)   p_kst 9.058824e-04   p_cons 8.110000e-02   p_joint 1.711765e-03

Joint ci ratio: 1.594969e-01	ci left: 1.585433e-03	ci right 1.862921e-03	k: 602	n:350000
Cons ci ratio: 2.231645e-02	ci left: 8.010953e-02	ci right 8.192028e-02	k: 28354	n:350000
KS ci ratio: 2.186924e-01	ci left: 8.168833e-04	ci right 1.020097e-03	k: 320	n:350000
CBLN4   350000 perm   123 sec   (2851 perm/sec)   p_kst 9.142857e-04   p_cons 8.101143e-02   p_joint 1.720000e-03

Joint ci ratio: 1.665670e-01	ci left: 1.408157e-03	ci right 1.666639e-03	k: 552	n:360000
Cons ci ratio: 2.200273e-02	ci left: 8.013285e-02	ci right 8.191834e-02	k: 29168	n:360000
KS ci ratio: 2.131195e-01	ci left: 8.388623e-04	ci right 1.041531e-03	k: 337	n:360000
CBLN4   360000 perm   128 sec   (2816 perm/sec)   p_kst 9.361111e-04   p_cons 8.102222e-02   p_joint 1.533333e-03

Joint ci ratio: 1.716171e-01	ci left: 1.287265e-03	ci right 1.531461e-03	k: 520	n:370000
Cons ci ratio: 2.169480e-02	ci left: 8.020349e-02	ci right 8.196524e-02	k: 30000	n:370000
KS ci ratio: 2.121818e-01	ci left: 8.238660e-04	ci right 1.021922e-03	k: 340	n:370000
CBLN4   370000 perm   133 sec   (2782 perm/sec)   p_kst 9.189189e-04   p_cons 8.108108e-02   p_joint 1.405405e-03

Joint ci ratio: 1.916277e-01	ci left: 9.946072e-04	ci right 1.207855e-03	k: 417	n:380000
Cons ci ratio: 2.140587e-02	ci left: 8.022606e-02	ci right 8.196454e-02	k: 30815	n:380000
KS ci ratio: 2.088396e-01	ci left: 8.296070e-04	ci right 1.025500e-03	k: 351	n:380000
CBLN4   380000 perm   138 sec   (2749 perm/sec)   p_kst 9.236842e-04   p_cons 8.109211e-02   p_joint 1.097368e-03

Joint ci ratio: 2.007293e-01	ci left: 8.788846e-04	ci right 1.077368e-03	k: 380	n:390000
Cons ci ratio: 2.113254e-02	ci left: 8.021700e-02	ci right 8.193282e-02	k: 31618	n:390000
KS ci ratio: 2.036941e-01	ci left: 8.521063e-04	ci right 1.047738e-03	k: 369	n:390000
CBLN4   390000 perm   143 sec   (2718 perm/sec)   p_kst 9.461538e-04   p_cons 8.107179e-02   p_joint 9.743590e-04

Joint ci ratio: 1.973892e-01	ci left: 8.877932e-04	ci right 1.084551e-03	k: 393	n:400000
Cons ci ratio: 2.085473e-02	ci left: 8.031303e-02	ci right 8.200805e-02	k: 32463	n:400000
KS ci ratio: 2.007318e-01	ci left: 8.569115e-04	ci right 1.050435e-03	k: 380	n:400000
CBLN4   400000 perm   149 sec   (2681 perm/sec)   p_kst 9.500000e-04   p_cons 8.115750e-02   p_joint 9.825000e-04

Joint ci ratio: 1.954157e-01	ci left: 8.846922e-04	ci right 1.078569e-03	k: 401	n:410000
Cons ci ratio: 2.060072e-02	ci left: 8.030983e-02	ci right 8.198390e-02	k: 33269	n:410000
KS ci ratio: 1.986573e-01	ci left: 8.545477e-04	ci right 1.045301e-03	k: 388	n:410000
CBLN4   410000 perm   155 sec   (2649 perm/sec)   p_kst 9.463415e-04   p_cons 8.114390e-02   p_joint 9.780488e-04

Joint ci ratio: 1.927955e-01	ci left: 8.885461e-04	ci right 1.080350e-03	k: 412	n:420000
Cons ci ratio: 2.034635e-02	ci left: 8.037564e-02	ci right 8.203014e-02	k: 34104	n:420000
KS ci ratio: 1.959064e-01	ci left: 8.590984e-04	ci right 1.047895e-03	k: 399	n:420000
CBLN4   420000 perm   160 sec   (2618 perm/sec)   p_kst 9.500000e-04   p_cons 8.120000e-02   p_joint 9.809524e-04

Joint ci ratio: 1.887249e-01	ci left: 9.077446e-04	ci right 1.099082e-03	k: 430	n:430000
Cons ci ratio: 2.011434e-02	ci left: 8.034128e-02	ci right 8.197600e-02	k: 34897	n:430000
KS ci ratio: 1.925645e-01	ci left: 8.700948e-04	ci right 1.057665e-03	k: 413	n:430000
CBLN4   430000 perm   166 sec   (2592 perm/sec)   p_kst 9.604651e-04   p_cons 8.115581e-02   p_joint 1.000000e-03

Joint ci ratio: 1.859409e-01	ci left: 9.152743e-04	ci right 1.105032e-03	k: 443	n:440000
Cons ci ratio: 1.988342e-02	ci left: 8.035836e-02	ci right 8.197444e-02	k: 35712	n:440000
KS ci ratio: 1.893880e-01	ci left: 8.806173e-04	ci right 1.066964e-03	k: 427	n:440000
CBLN4   440000 perm   172 sec   (2565 perm/sec)   p_kst 9.704545e-04   p_cons 8.116364e-02   p_joint 1.006818e-03

Joint ci ratio: 1.834776e-01	ci left: 9.203688e-04	ci right 1.108373e-03	k: 455	n:450000
Cons ci ratio: 1.966789e-02	ci left: 8.031726e-02	ci right 8.191481e-02	k: 36501	n:450000
KS ci ratio: 1.865750e-01	ci left: 8.885779e-04	ci right 1.073500e-03	k: 440	n:450000
CBLN4   450000 perm   177 sec   (2539 perm/sec)   p_kst 9.777778e-04   p_cons 8.111333e-02   p_joint 1.011111e-03

Joint ci ratio: 1.816935e-01	ci left: 9.190317e-04	ci right 1.104737e-03	k: 464	n:460000
Cons ci ratio: 1.945043e-02	ci left: 8.034513e-02	ci right 8.192537e-02	k: 37321	n:460000
KS ci ratio: 1.840868e-01	ci left: 8.941379e-04	ci right 1.077458e-03	k: 452	n:460000
CBLN4   460000 perm   183 sec   (2514 perm/sec)   p_kst 9.826087e-04   p_cons 8.113261e-02   p_joint 1.008696e-03

Joint ci ratio: 1.805333e-01	ci left: 9.116647e-04	ci right 1.094576e-03	k: 470	n:470000
Cons ci ratio: 1.923645e-02	ci left: 8.039945e-02	ci right 8.196316e-02	k: 38154	n:470000
KS ci ratio: 1.828804e-01	ci left: 8.872930e-04	ci right 1.067886e-03	k: 458	n:470000
CBLN4   470000 perm   189 sec   (2488 perm/sec)   p_kst 9.744681e-04   p_cons 8.117872e-02   p_joint 1.000000e-03

Joint ci ratio: 1.784613e-01	ci left: 9.145589e-04	ci right 1.095718e-03	k: 481	n:480000
Cons ci ratio: 1.904135e-02	ci left: 8.035825e-02	ci right 8.190514e-02	k: 38942	n:480000
KS ci ratio: 1.807274e-01	ci left: 8.906817e-04	ci right 1.069596e-03	k: 469	n:480000
CBLN4   480000 perm   195 sec   (2461 perm/sec)   p_kst 9.770833e-04   p_cons 8.112917e-02   p_joint 1.002083e-03

Joint ci ratio: 1.387404e-01	ci left: 1.513666e-03	ci right 1.741272e-03	k: 796	n:490000
Cons ci ratio: 1.885232e-02	ci left: 8.031678e-02	ci right 8.184736e-02	k: 39729	n:490000
KS ci ratio: 1.795854e-01	ci left: 8.841969e-04	ci right 1.060565e-03	k: 475	n:490000
CBLN4   490000 perm   201 sec   (2436 perm/sec)   p_kst 9.693878e-04   p_cons 8.107959e-02   p_joint 1.624490e-03

Joint ci ratio: 1.373684e-01	ci left: 1.514287e-03	ci right 1.739551e-03	k: 812	n:500000
Cons ci ratio: 1.866205e-02	ci left: 8.033082e-02	ci right 8.184604e-02	k: 40543	n:500000
KS ci ratio: 1.786504e-01	ci left: 8.760643e-04	ci right 1.049802e-03	k: 480	n:500000
CBLN4   500000 perm   207 sec   (2412 perm/sec)   p_kst 9.600000e-04   p_cons 8.108600e-02   p_joint 1.624000e-03

Joint ci ratio: 1.362011e-01	ci left: 1.511107e-03	ci right 1.733832e-03	k: 826	n:510000
Cons ci ratio: 1.847913e-02	ci left: 8.033071e-02	ci right 8.183092e-02	k: 41350	n:510000
KS ci ratio: 1.764624e-01	ci left: 8.813705e-04	ci right 1.053791e-03	k: 492	n:510000
CBLN4   510000 perm   214 sec   (2389 perm/sec)   p_kst 9.647059e-04   p_cons 8.107843e-02   p_joint 1.619608e-03

Joint ci ratio: 1.473264e-01	ci left: 1.259438e-03	ci right 1.461568e-03	k: 706	n:520000
Cons ci ratio: 1.829180e-02	ci left: 8.040919e-02	ci right 8.189548e-02	k: 42198	n:520000
KS ci ratio: 1.809270e-01	ci left: 8.203289e-04	ci right 9.853134e-04	k: 468	n:520000
CBLN4   520000 perm   220 sec   (2365 perm/sec)   p_kst 9.000000e-04   p_cons 8.115000e-02   p_joint 1.357692e-03

Joint ci ratio: 1.538978e-01	ci left: 1.128541e-03	ci right 1.318488e-03	k: 647	n:530000
Cons ci ratio: 1.811922e-02	ci left: 8.040962e-02	ci right 8.188176e-02	k: 43006	n:530000
KS ci ratio: 1.790282e-01	ci left: 8.228690e-04	ci right 9.864395e-04	k: 478	n:530000
CBLN4   530000 perm   226 sec   (2342 perm/sec)   p_kst 9.018868e-04   p_cons 8.114340e-02   p_joint 1.220755e-03

Joint ci ratio: 1.523768e-01	ci left: 1.130794e-03	ci right 1.319067e-03	k: 660	n:540000
Cons ci ratio: 1.795501e-02	ci left: 8.038059e-02	ci right 8.183872e-02	k: 43798	n:540000
KS ci ratio: 1.775519e-01	ci left: 8.217844e-04	ci right 9.836475e-04	k: 486	n:540000
CBLN4   540000 perm   233 sec   (2319 perm/sec)   p_kst 9.000000e-04   p_cons 8.110741e-02   p_joint 1.222222e-03

Joint ci ratio: 1.514636e-01	ci left: 1.124226e-03	ci right 1.310183e-03	k: 668	n:550000
Cons ci ratio: 1.778823e-02	ci left: 8.041062e-02	ci right 8.185561e-02	k: 44622	n:550000
KS ci ratio: 1.768280e-01	ci left: 8.137927e-04	ci right 9.733583e-04	k: 490	n:550000
CBLN4   550000 perm   239 sec   (2298 perm/sec)   p_kst 8.909091e-04   p_cons 8.113091e-02   p_joint 1.214545e-03

Joint ci ratio: 1.510139e-01	ci left: 1.111023e-03	ci right 1.294200e-03	k: 672	n:560000
Cons ci ratio: 1.763468e-02	ci left: 8.036672e-02	ci right 8.179833e-02	k: 45405	n:560000
KS ci ratio: 1.755811e-01	ci left: 8.112093e-04	ci right 9.690278e-04	k: 497	n:560000
CBLN4   560000 perm   246 sec   (2276 perm/sec)   p_kst 8.875000e-04   p_cons 8.108036e-02   p_joint 1.200000e-03

Joint ci ratio: 1.486033e-01	ci left: 1.128682e-03	ci right 1.311536e-03	k: 694	n:570000
Cons ci ratio: 1.747536e-02	ci left: 8.040654e-02	ci right 8.182579e-02	k: 46235	n:570000
KS ci ratio: 1.729942e-01	ci left: 8.221458e-04	ci right 9.794894e-04	k: 512	n:570000
CBLN4   570000 perm   253 sec   (2255 perm/sec)   p_kst 8.982456e-04   p_cons 8.111404e-02   p_joint 1.217544e-03

Joint ci ratio: 1.474412e-01	ci left: 1.127485e-03	ci right 1.308591e-03	k: 705	n:580000
Cons ci ratio: 1.731827e-02	ci left: 8.046222e-02	ci right 8.186955e-02	k: 47075	n:580000
KS ci ratio: 1.706801e-01	ci left: 8.310711e-04	ci right 9.877763e-04	k: 526	n:580000
CBLN4   580000 perm   260 sec   (2235 perm/sec)   p_kst 9.068966e-04   p_cons 8.116379e-02   p_joint 1.215517e-03

Joint ci ratio: 1.504600e-01	ci left: 1.062683e-03	ci right 1.237190e-03	k: 677	n:590000
Cons ci ratio: 1.716165e-02	ci left: 8.054814e-02	ci right 8.194411e-02	k: 47934	n:590000
KS ci ratio: 1.689260e-01	ci left: 8.348370e-04	ci right 9.904698e-04	k: 537	n:590000
CBLN4   590000 perm   266 sec   (2214 perm/sec)   p_kst 9.101695e-04   p_cons 8.124407e-02   p_joint 1.147458e-03

Joint ci ratio: 1.487150e-01	ci left: 1.070641e-03	ci right 1.244234e-03	k: 693	n:600000
Cons ci ratio: 1.700598e-02	ci left: 8.065948e-02	ci right 8.204457e-02	k: 48810	n:600000
KS ci ratio: 1.670726e-01	ci left: 8.400824e-04	ci right 9.948018e-04	k: 549	n:600000
CBLN4   600000 perm   273 sec   (2195 perm/sec)   p_kst 9.150000e-04   p_cons 8.135000e-02   p_joint 1.155000e-03

Joint ci ratio: 1.552348e-01	ci left: 9.631940e-04	ci right 1.126850e-03	k: 636	n:610000
Cons ci ratio: 1.686629e-02	ci left: 8.066270e-02	ci right 8.203636e-02	k: 49622	n:610000
KS ci ratio: 1.658708e-01	ci left: 8.388788e-04	ci right 9.921543e-04	k: 557	n:610000
CBLN4   610000 perm   280 sec   (2175 perm/sec)   p_kst 9.131148e-04   p_cons 8.134754e-02   p_joint 1.042623e-03

Joint ci ratio: 1.539115e-01	ci left: 9.647143e-04	ci right 1.127103e-03	k: 647	n:620000
Cons ci ratio: 1.673053e-02	ci left: 8.066104e-02	ci right 8.202352e-02	k: 50431	n:620000
KS ci ratio: 1.644041e-01	ci left: 8.408111e-04	ci right 9.929468e-04	k: 567	n:620000
CBLN4   620000 perm   288 sec   (2156 perm/sec)   p_kst 9.145161e-04   p_cons 8.134032e-02   p_joint 1.043548e-03

Joint ci ratio: 1.546311e-01	ci left: 9.402443e-04	ci right 1.099322e-03	k: 641	n:630000
Cons ci ratio: 1.659694e-02	ci left: 8.066897e-02	ci right 8.202059e-02	k: 51246	n:630000
KS ci ratio: 1.626941e-01	ci left: 8.457331e-04	ci right 9.970120e-04	k: 579	n:630000
CBLN4   630000 perm   295 sec   (2138 perm/sec)   p_kst 9.190476e-04   p_cons 8.134286e-02   p_joint 1.017460e-03

Joint ci ratio: 1.533231e-01	ci left: 9.420784e-04	ci right 1.099994e-03	k: 652	n:640000
Cons ci ratio: 1.646977e-02	ci left: 8.064712e-02	ci right 8.198792e-02	k: 52042	n:640000
KS ci ratio: 1.613093e-01	ci left: 8.475101e-04	ci right 9.976916e-04	k: 589	n:640000
CBLN4   640000 perm   302 sec   (2116 perm/sec)   p_kst 9.203125e-04   p_cons 8.131563e-02   p_joint 1.018750e-03

Joint ci ratio: 1.518190e-01	ci left: 9.468215e-04	ci right 1.103834e-03	k: 665	n:650000
Cons ci ratio: 1.633505e-02	ci left: 8.072101e-02	ci right 8.205196e-02	k: 52900	n:650000
KS ci ratio: 1.596931e-01	ci left: 8.521917e-04	ci right 1.001545e-03	k: 601	n:650000
CBLN4   650000 perm   310 sec   (2095 perm/sec)   p_kst 9.246154e-04   p_cons 8.138462e-02   p_joint 1.023077e-03

Joint ci ratio: 1.506919e-01	ci left: 9.470538e-04	ci right 1.102834e-03	k: 675	n:660000
Cons ci ratio: 1.620768e-02	ci left: 8.075496e-02	ci right 8.207599e-02	k: 53733	n:660000
KS ci ratio: 1.585127e-01	ci left: 8.523731e-04	ci right 1.000549e-03	k: 610	n:660000
CBLN4   660000 perm   318 sec   (2076 perm/sec)   p_kst 9.242424e-04   p_cons 8.141364e-02   p_joint 1.022727e-03

Joint ci ratio: 1.496988e-01	ci left: 9.458466e-04	ci right 1.100311e-03	k: 684	n:670000
Cons ci ratio: 1.608164e-02	ci left: 8.080281e-02	ci right 8.211425e-02	k: 54576	n:670000
KS ci ratio: 1.579970e-01	ci left: 8.453846e-04	ci right 9.918217e-04	k: 614	n:670000
CBLN4   670000 perm   326 sec   (2057 perm/sec)   p_kst 9.164179e-04   p_cons 8.145672e-02   p_joint 1.020896e-03

Joint ci ratio: 1.578696e-01	ci left: 8.343646e-04	ci right 9.787653e-04	k: 615	n:680000
Cons ci ratio: 1.596023e-02	ci left: 8.083317e-02	ci right 8.213511e-02	k: 55408	n:680000
KS ci ratio: 1.567278e-01	ci left: 8.470793e-04	ci right 9.925206e-04	k: 624	n:680000
CBLN4   680000 perm   333 sec   (2040 perm/sec)   p_kst 9.176471e-04   p_cons 8.148235e-02   p_joint 9.044118e-04

Joint ci ratio: 1.568545e-01	ci left: 8.334100e-04	ci right 9.766307e-04	k: 623	n:690000
Cons ci ratio: 1.584689e-02	ci left: 8.081214e-02	ci right 8.210442e-02	k: 56205	n:690000
KS ci ratio: 1.557344e-01	ci left: 8.459437e-04	ci right 9.901834e-04	k: 632	n:690000
CBLN4   690000 perm   341 sec   (2023 perm/sec)   p_kst 9.159420e-04   p_cons 8.145652e-02   p_joint 9.028986e-04

Joint ci ratio: 1.559823e-01	ci left: 8.311126e-04	ci right 9.730700e-04	k: 630	n:700000
Cons ci ratio: 1.573052e-02	ci left: 8.084300e-02	ci right 8.212618e-02	k: 57038	n:700000
KS ci ratio: 1.548806e-01	ci left: 8.434701e-04	ci right 9.864263e-04	k: 639	n:700000
CBLN4   700000 perm   349 sec   (2007 perm/sec)   p_kst 9.128571e-04   p_cons 8.148286e-02   p_joint 9.000000e-04

Joint ci ratio: 1.845268e-01	ci left: 5.766048e-04	ci right 6.951367e-04	k: 450	n:710000
Cons ci ratio: 1.561551e-02	ci left: 8.088424e-02	ci right 8.215861e-02	k: 57879	n:710000
KS ci ratio: 1.539217e-01	ci left: 8.424225e-04	ci right 9.842357e-04	k: 647	n:710000
CBLN4   710000 perm   357 sec   (1991 perm/sec)   p_kst 9.112676e-04   p_cons 8.151972e-02   p_joint 6.338028e-04

Joint ci ratio: 1.316138e-01	ci left: 1.149553e-03	ci right 1.312835e-03	k: 885	n:720000
Cons ci ratio: 1.549881e-02	ci left: 8.096451e-02	ci right 8.223053e-02	k: 58749	n:720000
KS ci ratio: 1.529804e-01	ci left: 8.414066e-04	ci right 9.821032e-04	k: 655	n:720000
CBLN4   720000 perm   365 sec   (1974 perm/sec)   p_kst 9.097222e-04   p_cons 8.159583e-02   p_joint 1.229167e-03

Joint ci ratio: 1.309507e-01	ci left: 1.145730e-03	ci right 1.307585e-03	k: 894	n:730000
Cons ci ratio: 1.538807e-02	ci left: 8.100985e-02	ci right 8.226744e-02	k: 59595	n:730000
KS ci ratio: 1.522859e-01	ci left: 8.377856e-04	ci right 9.771827e-04	k: 661	n:730000
CBLN4   730000 perm   373 sec   (1958 perm/sec)   p_kst 9.054795e-04   p_cons 8.163699e-02   p_joint 1.224658e-03

Joint ci ratio: 1.301534e-01	ci left: 1.144626e-03	ci right 1.305265e-03	k: 905	n:740000
Cons ci ratio: 1.527595e-02	ci left: 8.109036e-02	ci right 8.233995e-02	k: 60468	n:740000
KS ci ratio: 1.511485e-01	ci left: 8.394648e-04	ci right 9.780036e-04	k: 671	n:740000
CBLN4   740000 perm   381 sec   (1940 perm/sec)   p_kst 9.067568e-04   p_cons 8.171351e-02   p_joint 1.222973e-03

Joint ci ratio: 1.296540e-01	ci left: 1.138394e-03	ci right 1.297498e-03	k: 912	n:750000
Cons ci ratio: 1.517271e-02	ci left: 8.110497e-02	ci right 8.234627e-02	k: 61293	n:750000
KS ci ratio: 1.502569e-01	ci left: 8.385363e-04	ci right 9.760322e-04	k: 679	n:750000
CBLN4   750000 perm   390 sec   (1924 perm/sec)   p_kst 9.053333e-04   p_cons 8.172400e-02   p_joint 1.216000e-03

Joint ci ratio: 1.282562e-01	ci left: 1.148883e-03	ci right 1.307590e-03	k: 932	n:760000
Cons ci ratio: 1.507206e-02	ci left: 8.111398e-02	ci right 8.234711e-02	k: 62114	n:760000
KS ci ratio: 1.491640e-01	ci left: 8.401680e-04	ci right 9.768401e-04	k: 689	n:760000
CBLN4   760000 perm   398 sec   (1910 perm/sec)   p_kst 9.065789e-04   p_cons 8.172895e-02   p_joint 1.226316e-03

Joint ci ratio: 1.275068e-01	ci left: 1.147791e-03	ci right 1.305351e-03	k: 943	n:770000
Cons ci ratio: 1.497715e-02	ci left: 8.108525e-02	ci right 8.231011e-02	k: 62906	n:770000
KS ci ratio: 1.483068e-01	ci left: 8.392597e-04	ci right 9.749299e-04	k: 697	n:770000
CBLN4   770000 perm   407 sec   (1893 perm/sec)   p_kst 9.051948e-04   p_cons 8.169610e-02   p_joint 1.224675e-03

Joint ci ratio: 1.332100e-01	ci left: 1.035091e-03	ci right 1.184039e-03	k: 864	n:780000
Cons ci ratio: 1.488490e-02	ci left: 8.104833e-02	ci right 8.226503e-02	k: 63691	n:780000
KS ci ratio: 1.475689e-01	ci left: 8.371420e-04	ci right 9.717372e-04	k: 704	n:780000
CBLN4   780000 perm   416 sec   (1873 perm/sec)   p_kst 9.025641e-04   p_cons 8.165513e-02   p_joint 1.107692e-03

Joint ci ratio: 1.348598e-01	ci left: 9.962960e-04	ci right 1.141579e-03	k: 843	n:790000
Cons ci ratio: 1.479046e-02	ci left: 8.105148e-02	ci right 8.226045e-02	k: 64507	n:790000
KS ci ratio: 1.463285e-01	ci left: 8.411768e-04	ci right 9.751845e-04	k: 716	n:790000
CBLN4   790000 perm   425 sec   (1858 perm/sec)   p_kst 9.063291e-04   p_cons 8.165443e-02   p_joint 1.067089e-03

Joint ci ratio: 1.125602e-01	ci left: 1.428527e-03	ci right 1.600115e-03	k: 1210	n:800000
Cons ci ratio: 1.469560e-02	ci left: 8.107701e-02	ci right 8.227853e-02	k: 65341	n:800000
KS ci ratio: 1.454187e-01	ci left: 8.415015e-04	ci right 9.746550e-04	k: 725	n:800000
CBLN4   800000 perm   434 sec   (1842 perm/sec)   p_kst 9.062500e-04   p_cons 8.167625e-02   p_joint 1.512500e-03

Joint ci ratio: 1.126078e-01	ci left: 1.409691e-03	ci right 1.579092e-03	k: 1209	n:810000
Cons ci ratio: 1.460445e-02	ci left: 8.108223e-02	ci right 8.227632e-02	k: 66159	n:810000
KS ci ratio: 1.448218e-01	ci left: 8.382509e-04	ci right 9.702986e-04	k: 731	n:810000
CBLN4   810000 perm   443 sec   (1827 perm/sec)   p_kst 9.024691e-04   p_cons 8.167778e-02   p_joint 1.492593e-03

Joint ci ratio: 1.120537e-01	ci left: 1.406722e-03	ci right 1.574880e-03	k: 1221	n:820000
Cons ci ratio: 1.451393e-02	ci left: 8.109830e-02	ci right 8.228515e-02	k: 66986	n:820000
KS ci ratio: 1.443301e-01	ci left: 8.339052e-04	ci right 9.647838e-04	k: 736	n:820000
CBLN4   820000 perm   452 sec   (1814 perm/sec)   p_kst 8.975610e-04   p_cons 8.169024e-02   p_joint 1.489024e-03

Joint ci ratio: 1.115530e-01	ci left: 1.402656e-03	ci right 1.569529e-03	k: 1232	n:830000
Cons ci ratio: 1.442413e-02	ci left: 8.112360e-02	ci right 8.230342e-02	k: 67821	n:830000
KS ci ratio: 1.436497e-01	ci left: 8.319880e-04	ci right 9.618973e-04	k: 743	n:830000
CBLN4   830000 perm   461 sec   (1801 perm/sec)   p_kst 8.951807e-04   p_cons 8.171205e-02   p_joint 1.484337e-03

Joint ci ratio: 1.108806e-01	ci left: 1.403318e-03	ci right 1.569198e-03	k: 1247	n:840000
Cons ci ratio: 1.433712e-02	ci left: 8.113646e-02	ci right 8.230929e-02	k: 68646	n:840000
KS ci ratio: 1.425992e-01	ci left: 8.347098e-04	ci right 9.640099e-04	k: 754	n:840000
CBLN4   840000 perm   472 sec   (1780 perm/sec)   p_kst 8.976190e-04   p_cons 8.172143e-02   p_joint 1.484524e-03

Joint ci ratio: 1.103515e-01	ci left: 1.400535e-03	ci right 1.565245e-03	k: 1259	n:850000
Cons ci ratio: 1.424531e-02	ci left: 8.121587e-02	ci right 8.238227e-02	k: 69528	n:850000
KS ci ratio: 1.421297e-01	ci left: 8.305624e-04	ci right 9.587605e-04	k: 759	n:850000
CBLN4   850000 perm   481 sec   (1766 perm/sec)   p_kst 8.929412e-04   p_cons 8.179765e-02   p_joint 1.481176e-03

Joint ci ratio: 1.097436e-01	ci left: 1.400081e-03	ci right 1.563771e-03	k: 1273	n:860000
Cons ci ratio: 1.416575e-02	ci left: 8.118220e-02	ci right 8.234155e-02	k: 70314	n:860000
KS ci ratio: 1.413876e-01	ci left: 8.298770e-04	ci right 9.572442e-04	k: 767	n:860000
CBLN4   860000 perm   491 sec   (1752 perm/sec)   p_kst 8.918605e-04   p_cons 8.176047e-02   p_joint 1.480233e-03

Joint ci ratio: 1.096154e-01	ci left: 1.387341e-03	ci right 1.549340e-03	k: 1276	n:870000
Cons ci ratio: 1.408255e-02	ci left: 8.120202e-02	ci right 8.235479e-02	k: 71146	n:870000
KS ci ratio: 1.412962e-01	ci left: 8.214467e-04	ci right 9.474318e-04	k: 768	n:870000
CBLN4   870000 perm   500 sec   (1739 perm/sec)   p_kst 8.827586e-04   p_cons 8.177701e-02   p_joint 1.466667e-03

Joint ci ratio: 1.089350e-01	ci left: 1.389261e-03	ci right 1.550413e-03	k: 1292	n:880000
Cons ci ratio: 1.400356e-02	ci left: 8.119196e-02	ci right 8.233807e-02	k: 71952	n:880000
KS ci ratio: 1.405670e-01	ci left: 8.208825e-04	ci right 9.460768e-04	k: 776	n:880000
CBLN4   880000 perm   510 sec   (1727 perm/sec)   p_kst 8.818182e-04   p_cons 8.176364e-02   p_joint 1.468182e-03

Joint ci ratio: 1.093602e-01	ci left: 1.362721e-03	ci right 1.521451e-03	k: 1282	n:890000
Cons ci ratio: 1.392629e-02	ci left: 8.117766e-02	ci right 8.231720e-02	k: 72754	n:890000
KS ci ratio: 1.395823e-01	ci left: 8.235856e-04	ci right 9.482390e-04	k: 787	n:890000
CBLN4   890000 perm   519 sec   (1714 perm/sec)   p_kst 8.842697e-04   p_cons 8.174607e-02   p_joint 1.440449e-03

Joint ci ratio: 1.134645e-01	ci left: 1.249281e-03	ci right 1.400624e-03	k: 1191	n:900000
Cons ci ratio: 1.384784e-02	ci left: 8.119028e-02	ci right 8.232352e-02	k: 73580	n:900000
KS ci ratio: 1.387049e-01	ci left: 8.251590e-04	ci right 9.492007e-04	k: 797	n:900000
CBLN4   900000 perm   529 sec   (1701 perm/sec)   p_kst 8.855556e-04   p_cons 8.175556e-02   p_joint 1.323333e-03

Joint ci ratio: 1.130388e-01	ci left: 1.245163e-03	ci right 1.395403e-03	k: 1200	n:910000
Cons ci ratio: 1.377210e-02	ci left: 8.118731e-02	ci right 8.231426e-02	k: 74392	n:910000
KS ci ratio: 1.380149e-01	ci left: 8.245782e-04	ci right 9.478652e-04	k: 805	n:910000
CBLN4   910000 perm   539 sec   (1688 perm/sec)   p_kst 8.846154e-04   p_cons 8.174945e-02   p_joint 1.318681e-03

Joint ci ratio: 1.129455e-01	ci left: 1.233740e-03	ci right 1.382471e-03	k: 1202	n:920000
Cons ci ratio: 1.369561e-02	ci left: 8.120608e-02	ci right 8.232698e-02	k: 75224	n:920000
KS ci ratio: 1.374196e-01	ci left: 8.229619e-04	ci right 9.454331e-04	k: 812	n:920000
CBLN4   920000 perm   549 sec   (1676 perm/sec)   p_kst 8.826087e-04   p_cons 8.176522e-02   p_joint 1.306522e-03

Joint ci ratio: 1.122016e-01	ci left: 1.237194e-03	ci right 1.385295e-03	k: 1218	n:930000
Cons ci ratio: 1.362575e-02	ci left: 8.116552e-02	ci right 8.228010e-02	k: 76001	n:930000
KS ci ratio: 1.369155e-01	ci left: 8.203429e-04	ci right 9.419401e-04	k: 818	n:930000
CBLN4   930000 perm   559 sec   (1664 perm/sec)   p_kst 8.795699e-04   p_cons 8.172151e-02   p_joint 1.309677e-03

Joint ci ratio: 1.116081e-01	ci left: 1.237475e-03	ci right 1.384774e-03	k: 1231	n:940000
Cons ci ratio: 1.354705e-02	ci left: 8.123507e-02	ci right 8.234411e-02	k: 76881	n:940000
KS ci ratio: 1.360871e-01	ci left: 8.218909e-04	ci right 9.429208e-04	k: 828	n:940000
CBLN4   940000 perm   569 sec   (1652 perm/sec)   p_kst 8.808511e-04   p_cons 8.178830e-02   p_joint 1.309574e-03

Joint ci ratio: 1.109347e-01	ci left: 1.239799e-03	ci right 1.386426e-03	k: 1246	n:950000
Cons ci ratio: 1.346998e-02	ci left: 8.130002e-02	ci right 8.240358e-02	k: 77758	n:950000
KS ci ratio: 1.354352e-01	ci left: 8.213745e-04	ci right 9.417022e-04	k: 836	n:950000
CBLN4   950000 perm   579 sec   (1641 perm/sec)   p_kst 8.800000e-04   p_cons 8.185053e-02   p_joint 1.311579e-03

Joint ci ratio: 1.112935e-01	ci left: 1.218782e-03	ci right 1.363420e-03	k: 1238	n:960000
Cons ci ratio: 1.340210e-02	ci left: 8.127536e-02	ci right 8.237299e-02	k: 78550	n:960000
KS ci ratio: 1.347129e-01	ci left: 8.218767e-04	ci right 9.415844e-04	k: 845	n:960000
CBLN4   960000 perm   589 sec   (1629 perm/sec)   p_kst 8.802083e-04   p_cons 8.182292e-02   p_joint 1.289583e-03

Joint ci ratio: 1.110701e-01	ci left: 1.211229e-03	ci right 1.354663e-03	k: 1243	n:970000
Cons ci ratio: 1.333259e-02	ci left: 8.128104e-02	ci right 8.237301e-02	k: 79371	n:970000
KS ci ratio: 1.343959e-01	ci left: 8.173885e-04	ci right 9.361400e-04	k: 849	n:970000
CBLN4   970000 perm   600 sec   (1617 perm/sec)   p_kst 8.752577e-04   p_cons 8.182577e-02   p_joint 1.281443e-03

Joint ci ratio: 1.045420e-01	ci left: 1.357741e-03	ci right 1.508495e-03	k: 1403	n:980000
Cons ci ratio: 1.326379e-02	ci left: 8.129068e-02	ci right 8.237710e-02	k: 80196	n:980000
KS ci ratio: 1.340026e-01	ci left: 8.139785e-04	ci right 9.318609e-04	k: 854	n:980000
CBLN4   980000 perm   610 sec   (1606 perm/sec)   p_kst 8.714286e-04   p_cons 8.183265e-02   p_joint 1.431633e-03

Joint ci ratio: 1.040982e-01	ci left: 1.355832e-03	ci right 1.505695e-03	k: 1415	n:990000
Cons ci ratio: 1.319763e-02	ci left: 8.128201e-02	ci right 8.236286e-02	k: 81003	n:990000
KS ci ratio: 1.334575e-01	ci left: 8.125906e-04	ci right 9.297553e-04	k: 861	n:990000
CBLN4   990000 perm   621 sec   (1594 perm/sec)   p_kst 8.696970e-04   p_cons 8.182121e-02   p_joint 1.429293e-03

Joint ci ratio: 1.035874e-01	ci left: 1.355910e-03	ci right 1.505002e-03	k: 1429	n:1000000
Cons ci ratio: 1.312949e-02	ci left: 8.130743e-02	ci right 8.238299e-02	k: 81844	n:1000000
KS ci ratio: 1.327662e-01	ci left: 8.131650e-04	ci right 9.297573e-04	k: 870	n:1000000
CBLN4   1000000 perm   631 sec   (1584 perm/sec)   p_kst 8.700000e-04   p_cons 8.184400e-02   p_joint 1.429000e-03

Joint ci ratio: 1.030483e-01	ci left: 1.356953e-03	ci right 1.505336e-03	k: 1444	n:1010000
Cons ci ratio: 1.306428e-02	ci left: 8.131064e-02	ci right 8.238086e-02	k: 82663	n:1010000
KS ci ratio: 1.321607e-01	ci left: 8.127721e-04	ci right 9.287349e-04	k: 878	n:1010000
CBLN4   1010000 perm   642 sec   (1573 perm/sec)   p_kst 8.693069e-04   p_cons 8.184455e-02   p_joint 1.429703e-03

Joint ci ratio: 1.026585e-01	ci left: 1.354156e-03	ci right 1.501640e-03	k: 1455	n:1020000
Cons ci ratio: 1.299970e-02	ci left: 8.131772e-02	ci right 8.238270e-02	k: 83486	n:1020000
KS ci ratio: 1.317121e-01	ci left: 8.104919e-04	ci right 9.257062e-04	k: 884	n:1020000
CBLN4   1020000 perm   653 sec   (1563 perm/sec)   p_kst 8.666667e-04   p_cons 8.184902e-02   p_joint 1.426471e-03

Joint ci ratio: 1.022033e-01	ci left: 1.353307e-03	ci right 1.500005e-03	k: 1468	n:1030000
Cons ci ratio: 1.293732e-02	ci left: 8.131014e-02	ci right 8.236988e-02	k: 84294	n:1030000
KS ci ratio: 1.314158e-01	ci left: 8.063786e-04	ci right 9.207301e-04	k: 888	n:1030000
CBLN4   1030000 perm   664 sec   (1552 perm/sec)   p_kst 8.621359e-04   p_cons 8.183883e-02   p_joint 1.425243e-03

Joint ci ratio: 1.031220e-01	ci left: 1.315935e-03	ci right 1.459942e-03	k: 1442	n:1040000
Cons ci ratio: 1.287599e-02	ci left: 8.130081e-02	ci right 8.235536e-02	k: 85100	n:1040000
KS ci ratio: 1.308285e-01	ci left: 8.060650e-04	ci right 9.198214e-04	k: 896	n:1040000
CBLN4   1040000 perm   674 sec   (1542 perm/sec)   p_kst 8.615385e-04   p_cons 8.182692e-02   p_joint 1.386538e-03

Joint ci ratio: 1.026959e-01	ci left: 1.314537e-03	ci right 1.457760e-03	k: 1454	n:1050000
Cons ci ratio: 1.281642e-02	ci left: 8.128122e-02	ci right 8.233061e-02	k: 85895	n:1050000
KS ci ratio: 1.303211e-01	ci left: 8.048370e-04	ci right 9.179456e-04	k: 903	n:1050000
CBLN4   1050000 perm   685 sec   (1533 perm/sec)   p_kst 8.600000e-04   p_cons 8.180476e-02   p_joint 1.384762e-03

Joint ci ratio: 1.023450e-01	ci left: 1.311327e-03	ci right 1.453684e-03	k: 1464	n:1060000
Cons ci ratio: 1.275583e-02	ci left: 8.128365e-02	ci right 8.232807e-02	k: 86713	n:1060000
KS ci ratio: 1.297483e-01	ci left: 8.045459e-04	ci right 9.170783e-04	k: 911	n:1060000
CBLN4   1060000 perm   696 sec   (1523 perm/sec)   p_kst 8.594340e-04   p_cons 8.180472e-02   p_joint 1.381132e-03

Joint ci ratio: 1.018250e-01	ci left: 1.312733e-03	ci right 1.454474e-03	k: 1479	n:1070000
Cons ci ratio: 1.269909e-02	ci left: 8.125063e-02	ci right 8.228995e-02	k: 87493	n:1070000
KS ci ratio: 1.289028e-01	ci left: 8.078790e-04	ci right 9.200849e-04	k: 923	n:1070000
CBLN4   1070000 perm   707 sec   (1513 perm/sec)   p_kst 8.626168e-04   p_cons 8.176916e-02   p_joint 1.382243e-03

Joint ci ratio: 1.014488e-01	ci left: 1.310504e-03	ci right 1.451451e-03	k: 1490	n:1080000
Cons ci ratio: 1.263904e-02	ci left: 8.126625e-02	ci right 8.230081e-02	k: 88325	n:1080000
KS ci ratio: 1.283484e-01	ci left: 8.075677e-04	ci right 9.192113e-04	k: 931	n:1080000
CBLN4   1080000 perm   718 sec   (1504 perm/sec)   p_kst 8.620370e-04   p_cons 8.178241e-02   p_joint 1.379630e-03

Joint ci ratio: 1.010431e-01	ci left: 1.309211e-03	ci right 1.449423e-03	k: 1502	n:1090000
Cons ci ratio: 1.258153e-02	ci left: 8.126146e-02	ci right 8.229122e-02	k: 89135	n:1090000
KS ci ratio: 1.278692e-01	ci left: 8.063750e-04	ci right 9.174059e-04	k: 938	n:1090000
CBLN4   1090000 perm   729 sec   (1494 perm/sec)   p_kst 8.605505e-04   p_cons 8.177523e-02   p_joint 1.377982e-03

Joint ci ratio: 1.045502e-01	ci left: 1.209619e-03	ci right 1.343938e-03	k: 1403	n:1100000
Cons ci ratio: 1.252412e-02	ci left: 8.126493e-02	ci right 8.229000e-02	k: 89954	n:1100000
KS ci ratio: 1.273280e-01	ci left: 8.060849e-04	ci right 9.165706e-04	k: 946	n:1100000
CBLN4   1100000 perm   742 sec   (1483 perm/sec)   p_kst 8.600000e-04   p_cons 8.177636e-02   p_joint 1.275455e-03

Joint ci ratio: 1.044020e-01	ci left: 1.202231e-03	ci right 1.335528e-03	k: 1407	n:1110000
Cons ci ratio: 1.247153e-02	ci left: 8.121983e-02	ci right 8.224001e-02	k: 90719	n:1110000
KS ci ratio: 1.267272e-01	ci left: 8.066733e-04	ci right 9.166788e-04	k: 955	n:1110000
CBLN4   1110000 perm   753 sec   (1474 perm/sec)   p_kst 8.603604e-04   p_cons 8.172883e-02   p_joint 1.267568e-03

Joint ci ratio: 1.038868e-01	ci left: 1.203671e-03	ci right 1.336429e-03	k: 1421	n:1120000
Cons ci ratio: 1.241435e-02	ci left: 8.123877e-02	ci right 8.225447e-02	k: 91555	n:1120000
KS ci ratio: 1.260042e-01	ci left: 8.089819e-04	ci right 9.186258e-04	k: 966	n:1120000
CBLN4   1120000 perm   764 sec   (1465 perm/sec)   p_kst 8.625000e-04   p_cons 8.174554e-02   p_joint 1.268750e-03

Joint ci ratio: 1.033070e-01	ci left: 1.206812e-03	ci right 1.339129e-03	k: 1437	n:1130000
Cons ci ratio: 1.236042e-02	ci left: 8.122737e-02	ci right 8.223849e-02	k: 92357	n:1130000
KS ci ratio: 1.252935e-01	ci left: 8.112514e-04	ci right 9.205366e-04	k: 977	n:1130000
CBLN4   1130000 perm   776 sec   (1457 perm/sec)   p_kst 8.646018e-04   p_cons 8.173186e-02   p_joint 1.271681e-03

Joint ci ratio: 1.080781e-01	ci left: 1.090324e-03	ci right 1.215741e-03	k: 1313	n:1140000
Cons ci ratio: 1.230726e-02	ci left: 8.121531e-02	ci right 8.222190e-02	k: 93158	n:1140000
KS ci ratio: 1.244687e-01	ci left: 8.151825e-04	ci right 9.242212e-04	k: 990	n:1140000
CBLN4   1140000 perm   787 sec   (1448 perm/sec)   p_kst 8.684211e-04   p_cons 8.171754e-02   p_joint 1.151754e-03

Joint ci ratio: 1.075879e-01	ci left: 1.090996e-03	ci right 1.215886e-03	k: 1325	n:1150000
Cons ci ratio: 1.225599e-02	ci left: 8.118873e-02	ci right 8.219077e-02	k: 93942	n:1150000
KS ci ratio: 1.238454e-01	ci left: 8.165196e-04	ci right 9.251500e-04	k: 1000	n:1150000
CBLN4   1150000 perm   799 sec   (1439 perm/sec)   p_kst 8.695652e-04   p_cons 8.168870e-02   p_joint 1.152174e-03

Joint ci ratio: 9.358163e-02	ci left: 1.439650e-03	ci right 1.581823e-03	k: 1751	n:1160000
Cons ci ratio: 1.220003e-02	ci left: 8.122795e-02	ci right 8.222586e-02	k: 94802	n:1160000
KS ci ratio: 1.232313e-01	ci left: 8.178350e-04	ci right 9.260615e-04	k: 1010	n:1160000
CBLN4   1160000 perm   811 sec   (1431 perm/sec)   p_kst 8.706897e-04   p_cons 8.172586e-02   p_joint 1.509483e-03

Joint ci ratio: 9.299928e-02	ci left: 1.445710e-03	ci right 1.587545e-03	k: 1773	n:1170000
Cons ci ratio: 1.214600e-02	ci left: 8.125202e-02	ci right 8.224578e-02	k: 95645	n:1170000
KS ci ratio: 1.224463e-01	ci left: 8.216147e-04	ci right 9.295987e-04	k: 1023	n:1170000
CBLN4   1170000 perm   823 sec   (1422 perm/sec)   p_kst 8.743590e-04   p_cons 8.174786e-02   p_joint 1.515385e-03

Joint ci ratio: 9.284277e-02	ci left: 1.438425e-03	ci right 1.579294e-03	k: 1779	n:1180000
Cons ci ratio: 1.209309e-02	ci left: 8.127062e-02	ci right 8.226024e-02	k: 96482	n:1180000
KS ci ratio: 1.219708e-01	ci left: 8.212243e-04	ci right 9.287076e-04	k: 1031	n:1180000
CBLN4   1180000 perm   835 sec   (1414 perm/sec)   p_kst 8.737288e-04   p_cons 8.176441e-02   p_joint 1.507627e-03

Joint ci ratio: 9.240249e-02	ci left: 1.440292e-03	ci right 1.580639e-03	k: 1796	n:1190000
Cons ci ratio: 1.204303e-02	ci left: 8.126210e-02	ci right 8.224750e-02	k: 97287	n:1190000
KS ci ratio: 1.215009e-01	ci left: 8.208412e-04	ci right 9.278306e-04	k: 1039	n:1190000
CBLN4   1190000 perm   847 sec   (1406 perm/sec)   p_kst 8.731092e-04   p_cons 8.175378e-02   p_joint 1.509244e-03

Joint ci ratio: 9.186704e-02	ci left: 1.445387e-03	ci right 1.585370e-03	k: 1817	n:1200000
Cons ci ratio: 1.198952e-02	ci left: 8.130443e-02	ci right 8.228592e-02	k: 98153	n:1200000
KS ci ratio: 1.208057e-01	ci left: 8.236979e-04	ci right 9.304015e-04	k: 1051	n:1200000
CBLN4   1200000 perm   859 sec   (1396 perm/sec)   p_kst 8.758333e-04   p_cons 8.179417e-02   p_joint 1.514167e-03

Joint ci ratio: 9.766050e-02	ci left: 1.264798e-03	ci right 1.395459e-03	k: 1608	n:1210000
Cons ci ratio: 1.193691e-02	ci left: 8.134359e-02	ci right 8.232122e-02	k: 99016	n:1210000
KS ci ratio: 1.201789e-01	ci left: 8.257074e-04	ci right 9.320770e-04	k: 1062	n:1210000
CBLN4   1210000 perm   873 sec   (1386 perm/sec)   p_kst 8.776860e-04   p_cons 8.183140e-02   p_joint 1.328926e-03

Joint ci ratio: 9.705887e-02	ci left: 1.270425e-03	ci right 1.400813e-03	k: 1628	n:1220000
Cons ci ratio: 1.188889e-02	ci left: 8.133307e-02	ci right 8.230662e-02	k: 99819	n:1220000
KS ci ratio: 1.193396e-01	ci left: 8.308662e-04	ci right 9.371001e-04	k: 1077	n:1220000
CBLN4   1220000 perm   886 sec   (1378 perm/sec)   p_kst 8.827869e-04   p_cons 8.181885e-02   p_joint 1.334426e-03

Joint ci ratio: 9.667390e-02	ci left: 1.270410e-03	ci right 1.400249e-03	k: 1641	n:1230000
Cons ci ratio: 1.184041e-02	ci left: 8.133571e-02	ci right 8.230529e-02	k: 100638	n:1230000
KS ci ratio: 1.190640e-01	ci left: 8.280550e-04	ci right 9.336677e-04	k: 1082	n:1230000
CBLN4   1230000 perm   899 sec   (1368 perm/sec)   p_kst 8.796748e-04   p_cons 8.181951e-02   p_joint 1.334146e-03

Joint ci ratio: 9.620621e-02	ci left: 1.272757e-03	ci right 1.402171e-03	k: 1657	n:1240000
Cons ci ratio: 1.179530e-02	ci left: 8.130292e-02	ci right 8.226839e-02	k: 101413	n:1240000
KS ci ratio: 1.184096e-01	ci left: 8.307672e-04	ci right 9.361027e-04	k: 1094	n:1240000
CBLN4   1240000 perm   913 sec   (1359 perm/sec)   p_kst 8.822581e-04   p_cons 8.178468e-02   p_joint 1.336290e-03

Joint ci ratio: 9.742038e-02	ci left: 1.230567e-03	ci right 1.357362e-03	k: 1616	n:1250000
Cons ci ratio: 1.174870e-02	ci left: 8.129619e-02	ci right 8.225774e-02	k: 102220	n:1250000
KS ci ratio: 1.177127e-01	ci left: 8.342140e-04	ci right 9.393208e-04	k: 1107	n:1250000
CBLN4   1250000 perm   925 sec   (1351 perm/sec)   p_kst 8.856000e-04   p_cons 8.177600e-02   p_joint 1.292800e-03

Joint ci ratio: 9.715054e-02	ci left: 1.227770e-03	ci right 1.353906e-03	k: 1625	n:1260000
Cons ci ratio: 1.169944e-02	ci left: 8.133074e-02	ci right 8.228864e-02	k: 103079	n:1260000
KS ci ratio: 1.173427e-01	ci left: 8.329855e-04	ci right 9.375847e-04	k: 1114	n:1260000
CBLN4   1260000 perm   938 sec   (1344 perm/sec)   p_kst 8.841270e-04   p_cons 8.180873e-02   p_joint 1.289683e-03

Joint ci ratio: 9.691261e-02	ci left: 1.224249e-03	ci right 1.349697e-03	k: 1633	n:1270000
Cons ci ratio: 1.165415e-02	ci left: 8.132156e-02	ci right 8.227562e-02	k: 103883	n:1270000
KS ci ratio: 1.170807e-01	ci left: 8.302480e-04	ci right 9.342546e-04	k: 1119	n:1270000
CBLN4   1270000 perm   950 sec   (1337 perm/sec)   p_kst 8.811024e-04   p_cons 8.179764e-02   p_joint 1.285827e-03

Joint ci ratio: 9.650005e-02	ci left: 1.225357e-03	ci right 1.350354e-03	k: 1647	n:1280000
Cons ci ratio: 1.160980e-02	ci left: 8.130708e-02	ci right 8.225731e-02	k: 104680	n:1280000
KS ci ratio: 1.165614e-01	ci left: 8.313460e-04	ci right 9.349964e-04	k: 1129	n:1280000
CBLN4   1280000 perm   963 sec   (1330 perm/sec)   p_kst 8.820313e-04   p_cons 8.178125e-02   p_joint 1.286719e-03

Joint ci ratio: 9.606378e-02	ci left: 1.227206e-03	ci right 1.351794e-03	k: 1662	n:1290000
Cons ci ratio: 1.156590e-02	ci left: 8.129360e-02	ci right 8.224006e-02	k: 105478	n:1290000
KS ci ratio: 1.161510e-01	ci left: 8.309225e-04	ci right 9.341303e-04	k: 1137	n:1290000
CBLN4   1290000 perm   976 sec   (1322 perm/sec)   p_kst 8.813953e-04   p_cons 8.176589e-02   p_joint 1.288372e-03

Joint ci ratio: 9.577635e-02	ci left: 1.225274e-03	ci right 1.349273e-03	k: 1672	n:1300000
Cons ci ratio: 1.151995e-02	ci left: 8.131333e-02	ci right 8.225623e-02	k: 106319	n:1300000
KS ci ratio: 1.159477e-01	ci left: 8.275183e-04	ci right 9.301110e-04	k: 1141	n:1300000
CBLN4   1300000 perm   988 sec   (1315 perm/sec)   p_kst 8.776923e-04   p_cons 8.178385e-02   p_joint 1.286154e-03

Joint ci ratio: 9.546310e-02	ci left: 1.224117e-03	ci right 1.347571e-03	k: 1683	n:1310000
Cons ci ratio: 1.147554e-02	ci left: 8.131981e-02	ci right 8.225913e-02	k: 107143	n:1310000
KS ci ratio: 1.155940e-01	ci left: 8.263901e-04	ci right 9.285091e-04	k: 1148	n:1310000
CBLN4   1310000 perm   1001 sec   (1308 perm/sec)   p_kst 8.763359e-04   p_cons 8.178855e-02   p_joint 1.284733e-03

Joint ci ratio: 9.526552e-02	ci left: 1.220020e-03	ci right 1.342791e-03	k: 1690	n:1320000
Cons ci ratio: 1.143279e-02	ci left: 8.131110e-02	ci right 8.224680e-02	k: 107947	n:1320000
KS ci ratio: 1.151439e-01	ci left: 8.267510e-04	ci right 9.284898e-04	k: 1157	n:1320000
CBLN4   1320000 perm   1014 sec   (1301 perm/sec)   p_kst 8.765152e-04   p_cons 8.177803e-02   p_joint 1.280303e-03

Joint ci ratio: 9.495724e-02	ci left: 1.218920e-03	ci right 1.341163e-03	k: 1701	n:1330000
Cons ci ratio: 1.138875e-02	ci left: 8.132577e-02	ci right 8.225801e-02	k: 108782	n:1330000
KS ci ratio: 1.146991e-01	ci left: 8.271072e-04	ci right 9.284700e-04	k: 1166	n:1330000
CBLN4   1330000 perm   1028 sec   (1294 perm/sec)   p_kst 8.766917e-04   p_cons 8.179098e-02   p_joint 1.278947e-03

Joint ci ratio: 9.470730e-02	ci left: 1.216381e-03	ci right 1.338030e-03	k: 1710	n:1340000
Cons ci ratio: 1.134499e-02	ci left: 8.134321e-02	ci right 8.227204e-02	k: 109621	n:1340000
KS ci ratio: 1.144543e-01	ci left: 8.245591e-04	ci right 9.253795e-04	k: 1171	n:1340000
CBLN4   1340000 perm   1042 sec   (1286 perm/sec)   p_kst 8.738806e-04   p_cons 8.180672e-02   p_joint 1.276119e-03

Joint ci ratio: 9.479099e-02	ci left: 1.205201e-03	ci right 1.325844e-03	k: 1707	n:1350000
Cons ci ratio: 1.130083e-02	ci left: 8.137221e-02	ci right 8.229773e-02	k: 110476	n:1350000
KS ci ratio: 1.141626e-01	ci left: 8.227686e-04	ci right 9.230963e-04	k: 1177	n:1350000
CBLN4   1350000 perm   1055 sec   (1280 perm/sec)   p_kst 8.718519e-04   p_cons 8.183407e-02   p_joint 1.264444e-03

Joint ci ratio: 9.440483e-02	ci left: 1.206390e-03	ci right 1.326633e-03	k: 1721	n:1360000
Cons ci ratio: 1.125939e-02	ci left: 8.137146e-02	ci right 8.229356e-02	k: 111291	n:1360000
KS ci ratio: 1.137289e-01	ci left: 8.231479e-04	ci right 9.231150e-04	k: 1186	n:1360000
CBLN4   1360000 perm   1068 sec   (1273 perm/sec)   p_kst 8.720588e-04   p_cons 8.183162e-02   p_joint 1.265441e-03

Joint ci ratio: 9.399625e-02	ci left: 1.208275e-03	ci right 1.328156e-03	k: 1736	n:1370000
Cons ci ratio: 1.121748e-02	ci left: 8.138310e-02	ci right 8.230188e-02	k: 112123	n:1370000
KS ci ratio: 1.130168e-01	ci left: 8.277781e-04	ci right 9.276361e-04	k: 1201	n:1370000
CBLN4   1370000 perm   1082 sec   (1266 perm/sec)   p_kst 8.766423e-04   p_cons 8.184161e-02   p_joint 1.267153e-03

Joint ci ratio: 9.356619e-02	ci left: 1.210842e-03	ci right 1.330397e-03	k: 1752	n:1380000
Cons ci ratio: 1.117485e-02	ci left: 8.141049e-02	ci right 8.232605e-02	k: 112977	n:1380000
KS ci ratio: 1.125496e-01	ci left: 8.288217e-04	ci right 9.283647e-04	k: 1211	n:1380000
CBLN4   1380000 perm   1097 sec   (1258 perm/sec)   p_kst 8.775362e-04   p_cons 8.186739e-02   p_joint 1.269565e-03

Joint ci ratio: 9.416007e-02	ci left: 1.186674e-03	ci right 1.304628e-03	k: 1730	n:1390000
Cons ci ratio: 1.113504e-02	ci left: 8.140591e-02	ci right 8.231814e-02	k: 113787	n:1390000
KS ci ratio: 1.120422e-01	ci left: 8.305503e-04	ci right 9.298217e-04	k: 1222	n:1390000
CBLN4   1390000 perm   1111 sec   (1251 perm/sec)   p_kst 8.791367e-04   p_cons 8.186115e-02   p_joint 1.244604e-03

Joint ci ratio: 9.386236e-02	ci left: 1.185870e-03	ci right 1.303351e-03	k: 1741	n:1400000
Cons ci ratio: 1.109687e-02	ci left: 8.138501e-02	ci right 8.229386e-02	k: 114574	n:1400000
KS ci ratio: 1.117685e-01	ci left: 8.287836e-04	ci right 9.275858e-04	k: 1228	n:1400000
CBLN4   1400000 perm   1125 sec   (1245 perm/sec)   p_kst 8.771429e-04   p_cons 8.183857e-02   p_joint 1.243571e-03

Joint ci ratio: 9.367452e-02	ci left: 1.182308e-03	ci right 1.299189e-03	k: 1748	n:1410000
Cons ci ratio: 1.105768e-02	ci left: 8.138352e-02	ci right 8.228912e-02	k: 115388	n:1410000
KS ci ratio: 1.115419e-01	ci left: 8.263527e-04	ci right 9.246523e-04	k: 1233	n:1410000
CBLN4   1410000 perm   1139 sec   (1238 perm/sec)   p_kst 8.744681e-04   p_cons 8.183546e-02   p_joint 1.239716e-03

Joint ci ratio: 9.319600e-02	ci left: 1.186362e-03	ci right 1.303012e-03	k: 1766	n:1420000
Cons ci ratio: 1.101843e-02	ci left: 8.138837e-02	ci right 8.229080e-02	k: 116211	n:1420000
KS ci ratio: 1.109143e-01	ci left: 8.301182e-04	ci right 9.282739e-04	k: 1247	n:1420000
CBLN4   1420000 perm   1153 sec   (1232 perm/sec)   p_kst 8.781690e-04   p_cons 8.183873e-02   p_joint 1.243662e-03

Joint ci ratio: 9.295967e-02	ci left: 1.184213e-03	ci right 1.300340e-03	k: 1775	n:1430000
Cons ci ratio: 1.097955e-02	ci left: 8.139386e-02	ci right 8.229315e-02	k: 117035	n:1430000
KS ci ratio: 1.106930e-01	ci left: 8.277128e-04	ci right 9.253759e-04	k: 1252	n:1430000
CBLN4   1430000 perm   1167 sec   (1225 perm/sec)   p_kst 8.755245e-04   p_cons 8.184266e-02   p_joint 1.241259e-03

Joint ci ratio: 9.251778e-02	ci left: 1.187521e-03	ci right 1.303389e-03	k: 1792	n:1440000
Cons ci ratio: 1.094093e-02	ci left: 8.140136e-02	ci right 8.229754e-02	k: 117862	n:1440000
KS ci ratio: 1.101230e-01	ci left: 8.307433e-04	ci right 9.282266e-04	k: 1265	n:1440000
CBLN4   1440000 perm   1181 sec   (1219 perm/sec)   p_kst 8.784722e-04   p_cons 8.184861e-02   p_joint 1.244444e-03

Joint ci ratio: 9.215864e-02	ci left: 1.188763e-03	ci right 1.304278e-03	k: 1806	n:1450000
Cons ci ratio: 1.090301e-02	ci left: 8.140463e-02	ci right 8.229773e-02	k: 118683	n:1450000
KS ci ratio: 1.096476e-01	ci left: 8.323918e-04	ci right 9.296196e-04	k: 1276	n:1450000
CBLN4   1450000 perm   1195 sec   (1213 perm/sec)   p_kst 8.800000e-04   p_cons 8.185034e-02   p_joint 1.245517e-03

Joint ci ratio: 9.177842e-02	ci left: 1.190659e-03	ci right 1.305855e-03	k: 1821	n:1460000
Cons ci ratio: 1.086707e-02	ci left: 8.138600e-02	ci right 8.227593e-02	k: 119472	n:1460000
KS ci ratio: 1.091359e-01	ci left: 8.346848e-04	ci right 9.316962e-04	k: 1288	n:1460000
CBLN4   1460000 perm   1209 sec   (1208 perm/sec)   p_kst 8.821918e-04   p_cons 8.183014e-02   p_joint 1.247260e-03

Joint ci ratio: 9.140287e-02	ci left: 1.192530e-03	ci right 1.307409e-03	k: 1836	n:1470000
Cons ci ratio: 1.083192e-02	ci left: 8.136152e-02	ci right 8.224829e-02	k: 120252	n:1470000
KS ci ratio: 1.085895e-01	ci left: 8.376095e-04	ci right 9.344423e-04	k: 1301	n:1470000
CBLN4   1470000 perm   1224 sec   (1201 perm/sec)   p_kst 8.850340e-04   p_cons 8.180408e-02   p_joint 1.248980e-03

Joint ci ratio: 9.122938e-02	ci left: 1.189094e-03	ci right 1.303413e-03	k: 1843	n:1480000
Cons ci ratio: 1.079789e-02	ci left: 8.132660e-02	ci right 8.221018e-02	k: 121016	n:1480000
KS ci ratio: 1.084233e-01	ci left: 8.345793e-04	ci right 9.309046e-04	k: 1305	n:1480000
CBLN4   1480000 perm   1238 sec   (1196 perm/sec)   p_kst 8.817568e-04   p_cons 8.176757e-02   p_joint 1.245270e-03

Joint ci ratio: 9.152843e-02	ci left: 1.173243e-03	ci right 1.286428e-03	k: 1831	n:1490000
Cons ci ratio: 1.076009e-02	ci left: 8.134905e-02	ci right 8.222976e-02	k: 121865	n:1490000
KS ci ratio: 1.079695e-01	ci left: 8.361609e-04	ci right 9.322392e-04	k: 1316	n:1490000
CBLN4   1490000 perm   1253 sec   (1190 perm/sec)   p_kst 8.832215e-04   p_cons 8.178859e-02   p_joint 1.228859e-03

Joint ci ratio: 9.130454e-02	ci left: 1.171284e-03	ci right 1.283989e-03	k: 1840	n:1500000
Cons ci ratio: 1.072373e-02	ci left: 8.135658e-02	ci right 8.223437e-02	k: 122692	n:1500000
KS ci ratio: 1.077245e-01	ci left: 8.344785e-04	ci right 9.301321e-04	k: 1322	n:1500000
CBLN4   1500000 perm   1268 sec   (1183 perm/sec)   p_kst 8.813333e-04   p_cons 8.179467e-02   p_joint 1.226667e-03

Joint ci ratio: 9.304144e-02	ci left: 1.119531e-03	ci right 1.229417e-03	k: 1772	n:1510000
Cons ci ratio: 1.068849e-02	ci left: 8.135344e-02	ci right 8.222830e-02	k: 123503	n:1510000
KS ci ratio: 1.071989e-01	ci left: 8.373301e-04	ci right 9.328128e-04	k: 1335	n:1510000
CBLN4   1510000 perm   1283 sec   (1177 perm/sec)   p_kst 8.841060e-04   p_cons 8.179007e-02   p_joint 1.173510e-03

Joint ci ratio: 9.272816e-02	ci left: 1.119877e-03	ci right 1.229407e-03	k: 1784	n:1520000
Cons ci ratio: 1.065187e-02	ci left: 8.137463e-02	ci right 8.224670e-02	k: 124351	n:1520000
KS ci ratio: 1.070390e-01	ci left: 8.343824e-04	ci right 9.293780e-04	k: 1339	n:1520000
CBLN4   1520000 perm   1298 sec   (1171 perm/sec)   p_kst 8.809211e-04   p_cons 8.180987e-02   p_joint 1.173684e-03

Joint ci ratio: 1.023318e-01	ci left: 9.091285e-04	ci right 1.007809e-03	k: 1465	n:1530000
Cons ci ratio: 1.061599e-02	ci left: 8.139033e-02	ci right 8.225962e-02	k: 125191	n:1530000
KS ci ratio: 1.066023e-01	ci left: 8.359264e-04	ci right 9.306852e-04	k: 1350	n:1530000
CBLN4   1530000 perm   1314 sec   (1165 perm/sec)   p_kst 8.823529e-04   p_cons 8.182418e-02   p_joint 9.575163e-04

Joint ci ratio: 1.019500e-01	ci left: 9.101855e-04	ci right 1.008590e-03	k: 1476	n:1540000
Cons ci ratio: 1.058079e-02	ci left: 8.140130e-02	ci right 8.226780e-02	k: 126024	n:1540000
KS ci ratio: 1.062489e-01	ci left: 8.361869e-04	ci right 9.306414e-04	k: 1359	n:1540000
CBLN4   1540000 perm   1329 sec   (1159 perm/sec)   p_kst 8.824675e-04   p_cons 8.183377e-02   p_joint 9.584416e-04

Joint ci ratio: 1.015383e-01	ci left: 9.118583e-04	ci right 1.010022e-03	k: 1488	n:1550000
Cons ci ratio: 1.054662e-02	ci left: 8.140248e-02	ci right 8.226618e-02	k: 126842	n:1550000
KS ci ratio: 1.058218e-01	ci left: 8.377008e-04	ci right 9.319222e-04	k: 1370	n:1550000
CBLN4   1550000 perm   1344 sec   (1153 perm/sec)   p_kst 8.838710e-04   p_cons 8.183355e-02   p_joint 9.600000e-04

Joint ci ratio: 1.013345e-01	ci left: 9.097616e-04	ci right 1.007491e-03	k: 1494	n:1560000
Cons ci ratio: 1.051219e-02	ci left: 8.141196e-02	ci right 8.227293e-02	k: 127673	n:1560000
KS ci ratio: 1.055527e-01	ci left: 8.366994e-04	ci right 9.305541e-04	k: 1377	n:1560000
CBLN4   1560000 perm   1359 sec   (1148 perm/sec)   p_kst 8.826923e-04   p_cons 8.184167e-02   p_joint 9.576923e-04

Joint ci ratio: 1.010645e-01	ci left: 9.089335e-04	ci right 1.006298e-03	k: 1502	n:1570000
Cons ci ratio: 1.047881e-02	ci left: 8.141116e-02	ci right 8.226937e-02	k: 128488	n:1570000
KS ci ratio: 1.053619e-01	ci left: 8.344708e-04	ci right 9.278957e-04	k: 1382	n:1570000
CBLN4   1570000 perm   1374 sec   (1142 perm/sec)   p_kst 8.802548e-04   p_cons 8.183949e-02   p_joint 9.566879e-04

Joint ci ratio: 1.008635e-01	ci left: 9.068822e-04	ci right 1.003823e-03	k: 1508	n:1580000
Cons ci ratio: 1.044439e-02	ci left: 8.142995e-02	ci right 8.228551e-02	k: 129334	n:1580000
KS ci ratio: 1.051342e-01	ci left: 8.328868e-04	ci right 9.259204e-04	k: 1388	n:1580000
CBLN4   1580000 perm   1392 sec   (1135 perm/sec)   p_kst 8.784810e-04   p_cons 8.185696e-02   p_joint 9.544304e-04

Joint ci ratio: 1.004317e-01	ci left: 9.091489e-04	ci right 1.005891e-03	k: 1521	n:1590000
Cons ci ratio: 1.041121e-02	ci left: 8.143532e-02	ci right 8.228821e-02	k: 130159	n:1590000
KS ci ratio: 1.047202e-01	ci left: 8.343852e-04	ci right 9.271967e-04	k: 1399	n:1590000
CBLN4   1590000 perm   1407 sec   (1130 perm/sec)   p_kst 8.798742e-04   p_cons 8.186101e-02   p_joint 9.566038e-04

Joint ci ratio: 1.000054e-01	ci left: 9.113881e-04	ci right 1.007933e-03	k: 1534	n:1600000
Cons ci ratio: 1.037844e-02	ci left: 8.143939e-02	ci right 8.228962e-02	k: 130982	n:1600000
KS ci ratio: 1.043112e-01	ci left: 8.358657e-04	ci right 9.284563e-04	k: 1410	n:1600000
CBLN4   1600000 perm   1423 sec   (1124 perm/sec)   p_kst 8.812500e-04   p_cons 8.186375e-02   p_joint 9.587500e-04

Joint ci ratio: 9.974583e-02	ci left: 9.105722e-04	ci right 1.006765e-03	k: 1542	n:1610000
Cons ci ratio: 1.034627e-02	ci left: 8.143908e-02	ci right 8.228665e-02	k: 131798	n:1610000
KS ci ratio: 1.040534e-01	ci left: 8.349085e-04	ci right 9.271506e-04	k: 1417	n:1610000
CBLN4   1610000 perm   1438 sec   (1119 perm/sec)   p_kst 8.801242e-04   p_cons 8.186211e-02   p_joint 9.577640e-04

Joint ci ratio: 9.961697e-02	ci left: 9.073589e-04	ci right 1.003082e-03	k: 1546	n:1620000
Cons ci ratio: 1.031346e-02	ci left: 8.145232e-02	ci right 8.229733e-02	k: 132636	n:1620000
KS ci ratio: 1.038706e-01	ci left: 8.327608e-04	ci right 9.245942e-04	k: 1422	n:1620000
CBLN4   1620000 perm   1454 sec   (1114 perm/sec)   p_kst 8.777778e-04   p_cons 8.187407e-02   p_joint 9.543210e-04

Joint ci ratio: 9.923276e-02	ci left: 9.089712e-04	ci right 1.004473e-03	k: 1558	n:1630000
Cons ci ratio: 1.028190e-02	ci left: 8.145193e-02	ci right 8.229434e-02	k: 133452	n:1630000
KS ci ratio: 1.034714e-01	ci left: 8.342254e-04	ci right 9.258451e-04	k: 1433	n:1630000
CBLN4   1630000 perm   1470 sec   (1109 perm/sec)   p_kst 8.791411e-04   p_cons 8.187239e-02   p_joint 9.558282e-04

Joint ci ratio: 9.907416e-02	ci left: 9.064018e-04	ci right 1.001472e-03	k: 1563	n:1640000
Cons ci ratio: 1.025086e-02	ci left: 8.144791e-02	ci right 8.228771e-02	k: 134262	n:1640000
KS ci ratio: 1.032198e-01	ci left: 8.332966e-04	ci right 9.245784e-04	k: 1440	n:1640000
CBLN4   1640000 perm   1486 sec   (1103 perm/sec)   p_kst 8.780488e-04   p_cons 8.186707e-02   p_joint 9.530488e-04

Joint ci ratio: 9.869617e-02	ci left: 9.080013e-04	ci right 1.002855e-03	k: 1575	n:1650000
Cons ci ratio: 1.022073e-02	ci left: 8.143487e-02	ci right 8.227206e-02	k: 135057	n:1650000
KS ci ratio: 1.027926e-01	ci left: 8.353317e-04	ci right 9.264348e-04	k: 1452	n:1650000
CBLN4   1650000 perm   1502 sec   (1098 perm/sec)   p_kst 8.800000e-04   p_cons 8.185273e-02   p_joint 9.545455e-04

Joint ci ratio: 9.835349e-02	ci left: 9.089947e-04	ci right 1.003604e-03	k: 1586	n:1660000
Cons ci ratio: 1.018873e-02	ci left: 8.145324e-02	ci right 8.228798e-02	k: 135904	n:1660000
KS ci ratio: 1.022659e-01	ci left: 8.391041e-04	ci right 9.301216e-04	k: 1467	n:1660000
CBLN4   1660000 perm   1518 sec   (1094 perm/sec)   p_kst 8.837349e-04   p_cons 8.186988e-02   p_joint 9.554217e-04

Joint ci ratio: 1.047225e-01	ci left: 7.944138e-04	ci right 8.827811e-04	k: 1399	n:1670000
Cons ci ratio: 1.015829e-02	ci left: 8.145287e-02	ci right 8.228510e-02	k: 136720	n:1670000
KS ci ratio: 1.021965e-01	ci left: 8.352464e-04	ci right 9.257803e-04	k: 1469	n:1670000
CBLN4   1670000 perm   1535 sec   (1088 perm/sec)   p_kst 8.796407e-04   p_cons 8.186826e-02   p_joint 8.377246e-04

Joint ci ratio: 1.042026e-01	ci left: 7.978009e-04	ci right 8.860773e-04	k: 1413	n:1680000
Cons ci ratio: 1.012933e-02	ci left: 8.143470e-02	ci right 8.226436e-02	k: 137506	n:1680000
KS ci ratio: 1.018162e-01	ci left: 8.366554e-04	ci right 9.269843e-04	k: 1480	n:1680000
CBLN4   1680000 perm   1551 sec   (1083 perm/sec)   p_kst 8.809524e-04   p_cons 8.184881e-02   p_joint 8.410714e-04

Joint ci ratio: 1.039090e-01	ci left: 7.976907e-04	ci right 8.856911e-04	k: 1421	n:1690000
Cons ci ratio: 1.009854e-02	ci left: 8.144745e-02	ci right 8.227470e-02	k: 138344	n:1690000
KS ci ratio: 1.015423e-01	ci left: 8.363181e-04	ci right 9.263532e-04	k: 1488	n:1690000
CBLN4   1690000 perm   1567 sec   (1078 perm/sec)   p_kst 8.804734e-04   p_cons 8.186036e-02   p_joint 8.408284e-04

Joint ci ratio: 1.034372e-01	ci left: 8.004472e-04	ci right 8.883264e-04	k: 1434	n:1700000
Cons ci ratio: 1.006826e-02	ci left: 8.145652e-02	ci right 8.228137e-02	k: 139176	n:1700000
KS ci ratio: 1.010345e-01	ci left: 8.399986e-04	ci right 9.299510e-04	k: 1503	n:1700000
CBLN4   1700000 perm   1583 sec   (1074 perm/sec)   p_kst 8.841176e-04   p_cons 8.186824e-02   p_joint 8.435294e-04

Joint ci ratio: 1.031858e-01	ci left: 7.997540e-04	ci right 8.873308e-04	k: 1441	n:1710000
Cons ci ratio: 1.003869e-02	ci left: 8.145908e-02	ci right 8.228152e-02	k: 139997	n:1710000
KS ci ratio: 1.007003e-01	ci left: 8.407868e-04	ci right 9.305081e-04	k: 1513	n:1710000
CBLN4   1710000 perm   1599 sec   (1069 perm/sec)   p_kst 8.847953e-04   p_cons 8.186959e-02   p_joint 8.426901e-04

Joint ci ratio: 1.029008e-01	ci left: 7.996356e-04	ci right 8.869429e-04	k: 1449	n:1720000
Cons ci ratio: 1.000841e-02	ci left: 8.147611e-02	ci right 8.229623e-02	k: 140843	n:1720000
KS ci ratio: 1.005014e-01	ci left: 8.392991e-04	ci right 9.286743e-04	k: 1519	n:1720000
CBLN4   1720000 perm   1617 sec   (1064 perm/sec)   p_kst 8.831395e-04   p_cons 8.188547e-02   p_joint 8.424419e-04

Joint ci ratio: 1.026181e-01	ci left: 7.995188e-04	ci right 8.865592e-04	k: 1457	n:1730000
Cons ci ratio: 9.979091e-03	ci left: 8.148257e-02	ci right 8.230033e-02	k: 141671	n:1730000
KS ci ratio: 1.002052e-01	ci left: 8.395194e-04	ci right 9.286391e-04	k: 1528	n:1730000
CBLN4   1730000 perm   1634 sec   (1059 perm/sec)   p_kst 8.832370e-04   p_cons 8.189075e-02   p_joint 8.421965e-04

Joint ci ratio: 1.041304e-01	ci left: 7.714094e-04	ci right 8.567029e-04	k: 1415	n:1740000
Cons ci ratio: 9.948090e-03	ci left: 8.151820e-02	ci right 8.233377e-02	k: 142550	n:1740000
KS ci ratio: 9.984661e-02	ci left: 8.408583e-04	ci right 9.297820e-04	k: 1539	n:1740000
CBLN4   1740000 perm   1651 sec   (1054 perm/sec)   p_kst 8.844828e-04   p_cons 8.192529e-02   p_joint 8.132184e-04

Joint ci ratio: 1.062937e-01	ci left: 7.352862e-04	ci right 8.183802e-04	k: 1358	n:1750000
Cons ci ratio: 9.921596e-03	ci left: 8.148957e-02	ci right 8.230267e-02	k: 143317	n:1750000
KS ci ratio: 9.952397e-02	ci left: 8.416252e-04	ci right 9.303256e-04	k: 1549	n:1750000
CBLN4   1750000 perm   1668 sec   (1049 perm/sec)   p_kst 8.851429e-04   p_cons 8.189543e-02   p_joint 7.760000e-04

Joint ci ratio: 1.057888e-01	ci left: 7.382990e-04	ci right 8.213125e-04	k: 1371	n:1760000
Cons ci ratio: 9.892807e-03	ci left: 8.149926e-02	ci right 8.231007e-02	k: 144151	n:1760000
KS ci ratio: 9.904569e-02	ci left: 8.451545e-04	ci right 9.337739e-04	k: 1564	n:1760000
CBLN4   1760000 perm   1685 sec   (1044 perm/sec)   p_kst 8.886364e-04   p_cons 8.190398e-02   p_joint 7.789773e-04

Joint ci ratio: 1.071257e-01	ci left: 7.154297e-04	ci right 7.969525e-04	k: 1337	n:1770000
Cons ci ratio: 9.863379e-03	ci left: 8.152236e-02	ci right 8.233098e-02	k: 145009	n:1770000
KS ci ratio: 9.882498e-02	ci left: 8.442365e-04	ci right 9.325509e-04	k: 1571	n:1770000
CBLN4   1770000 perm   1702 sec   (1040 perm/sec)   p_kst 8.875706e-04   p_cons 8.192599e-02   p_joint 7.553672e-04

Joint ci ratio: 1.067275e-01	ci left: 7.168782e-04	ci right 7.982434e-04	k: 1347	n:1780000
Cons ci ratio: 9.836598e-03	ci left: 8.150878e-02	ci right 8.231506e-02	k: 145802	n:1780000
KS ci ratio: 9.841876e-02	ci left: 8.466169e-04	ci right 9.347953e-04	k: 1584	n:1780000
CBLN4   1780000 perm   1720 sec   (1035 perm/sec)   p_kst 8.898876e-04   p_cons 8.191124e-02   p_joint 7.567416e-04

Joint ci ratio: 1.065302e-01	ci left: 7.155921e-04	ci right 7.966517e-04	k: 1352	n:1790000
Cons ci ratio: 9.809379e-03	ci left: 8.150538e-02	ci right 8.230938e-02	k: 146613	n:1790000
KS ci ratio: 9.820220e-02	ci left: 8.457016e-04	ci right 9.335797e-04	k: 1591	n:1790000
CBLN4   1790000 perm   1739 sec   (1029 perm/sec)   p_kst 8.888268e-04   p_cons 8.190670e-02   p_joint 7.553073e-04

Joint ci ratio: 1.061776e-01	ci left: 7.164836e-04	ci right 7.973588e-04	k: 1361	n:1800000
Cons ci ratio: 9.780542e-03	ci left: 8.153029e-02	ci right 8.233216e-02	k: 147475	n:1800000
KS ci ratio: 9.780357e-02	ci left: 8.480485e-04	ci right 9.357923e-04	k: 1604	n:1800000
CBLN4   1800000 perm   1756 sec   (1025 perm/sec)   p_kst 8.911111e-04   p_cons 8.193056e-02   p_joint 7.561111e-04

Joint ci ratio: 1.057513e-01	ci left: 7.184415e-04	ci right 7.991918e-04	k: 1372	n:1810000
Cons ci ratio: 9.751958e-03	ci left: 8.155494e-02	ci right 8.235469e-02	k: 148337	n:1810000
KS ci ratio: 9.743991e-02	ci left: 8.498312e-04	ci right 9.374138e-04	k: 1616	n:1810000
CBLN4   1810000 perm   1774 sec   (1020 perm/sec)   p_kst 8.928177e-04   p_cons 8.195414e-02   p_joint 7.580110e-04

Joint ci ratio: 1.056361e-01	ci left: 7.160987e-04	ci right 7.964926e-04	k: 1375	n:1820000
Cons ci ratio: 9.724617e-03	ci left: 8.156396e-02	ci right 8.236155e-02	k: 149171	n:1820000
KS ci ratio: 9.719978e-02	ci left: 8.494504e-04	ci right 9.367657e-04	k: 1624	n:1820000
CBLN4   1820000 perm   1792 sec   (1016 perm/sec)   p_kst 8.923077e-04   p_cons 8.196209e-02   p_joint 7.554945e-04

Joint ci ratio: 9.975159e-02	ci left: 8.011022e-04	ci right 8.857362e-04	k: 1542	n:1830000
Cons ci ratio: 9.699159e-03	ci left: 8.154726e-02	ci right 8.234259e-02	k: 149958	n:1830000
KS ci ratio: 9.687241e-02	ci left: 8.506737e-04	ci right 9.378035e-04	k: 1635	n:1830000
CBLN4   1830000 perm   1809 sec   (1012 perm/sec)   p_kst 8.934426e-04   p_cons 8.194426e-02   p_joint 8.426230e-04

Outputting figure to mutsig2_images.part000000000030/CBLN4.6_618_1830000_0.00089344_0.081944_0.00084262.png
                gene_name: CBLN4
               theta_stop: 0.100 
                    nperm: 1830000 
                     p_ks: 0.00089 
        ci_ks_bounds_left: 0.00085 
       ci_ks_bounds_right: 0.00094 
                   p_cons: 0.082 
      ci_cons_bounds_left: 0.082 
     ci_cons_bounds_right: 0.082 
                  p_joint: 0.00084 
     ci_joint_bounds_left: 0.00080 
    ci_joint_bounds_right: 0.00089 

Current progress: 20 percent done.
CATSPERG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.473567e-02	ci left: 5.503049e-01	ci right 5.698601e-01	k: 5601	n:10000
Cons ci ratio: 2.575267e-02	ci left: 6.893987e-01	ci right 7.074856e-01	k: 6985	n:10000
KS ci ratio: 4.678286e-02	ci left: 4.027284e-01	ci right 4.221226e-01	k: 4124	n:10000
CATSPERG   10000 perm   2 sec   (4085 perm/sec)   p_kst 4.124000e-01   p_cons 6.985000e-01   p_joint 5.601000e-01

Outputting figure to mutsig2_images.part000000000030/CATSPERG.5_3592_10000_0.4124_0.6985_0.5601.png
                gene_name: CATSPERG
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 22 percent done.
CC2D1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.827998e-02	ci left: 5.019507e-01	ci right 5.216425e-01	k: 5118	n:10000
Cons ci ratio: 2.239042e-02	ci left: 7.454356e-01	ci right 7.624162e-01	k: 7540	n:10000
KS ci ratio: 5.208602e-02	ci left: 3.520751e-01	ci right 3.710056e-01	k: 3615	n:10000
CC2D1B   10000 perm   2 sec   (4290 perm/sec)   p_kst 3.615000e-01   p_cons 7.540000e-01   p_joint 5.118000e-01

Outputting figure to mutsig2_images.part000000000030/CC2D1B.5_2669_10000_0.3615_0.754_0.5118.png
                gene_name: CC2D1B
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 24 percent done.
CCAR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.465674e-02	ci left: 7.075543e-01	ci right 7.253194e-01	k: 7165	n:10000
Cons ci ratio: 3.748370e-02	ci left: 5.124546e-01	ci right 5.321324e-01	k: 5223	n:10000
KS ci ratio: 5.147127e-02	ci left: 3.575431e-01	ci right 3.765344e-01	k: 3670	n:10000
CCAR1   10000 perm   2 sec   (4388 perm/sec)   p_kst 3.670000e-01   p_cons 5.223000e-01   p_joint 7.165000e-01

Outputting figure to mutsig2_images.part000000000030/CCAR1.5_3549_10000_0.367_0.5223_0.7165.png
                gene_name: CCAR1
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 26 percent done.
CCDC102B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.822146e-02	ci left: 3.881880e-01	ci right 4.074716e-01	k: 3978	n:10000
Cons ci ratio: 3.778521e-02	ci left: 5.084526e-01	ci right 5.281367e-01	k: 5183	n:10000
KS ci ratio: 6.112769e-02	ci left: 2.824065e-01	ci right 3.003152e-01	k: 2913	n:10000
CCDC102B   10000 perm   2 sec   (5129 perm/sec)   p_kst 2.913000e-01   p_cons 5.183000e-01   p_joint 3.978000e-01

Outputting figure to mutsig2_images.part000000000030/CCDC102B.5_1570_10000_0.2913_0.5183_0.3978.png
                gene_name: CCDC102B
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 28 percent done.
CCDC105
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.787716e-02	ci left: 2.415369e-01	ci right 2.586089e-01	k: 2500	n:10000
Cons ci ratio: 4.892293e-02	ci left: 3.813192e-01	ci right 4.005443e-01	k: 3909	n:10000
KS ci ratio: 8.064764e-02	ci left: 1.833364e-01	ci right 1.988440e-01	k: 1910	n:10000
CCDC105   10000 perm   2 sec   (5477 perm/sec)   p_kst 1.910000e-01   p_cons 3.909000e-01   p_joint 2.500000e-01

Outputting figure to mutsig2_images.part000000000030/CCDC105.5_1528_10000_0.191_0.3909_0.25.png
                gene_name: CCDC105
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 30 percent done.
CASP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.857208e-02	ci left: 4.981503e-01	ci right 5.178450e-01	k: 5080	n:10000
Cons ci ratio: 5.864716e-02	ci left: 2.996526e-01	ci right 3.178589e-01	k: 3087	n:10000
KS ci ratio: 2.569767e-02	ci left: 6.903061e-01	ci right 7.083777e-01	k: 6994	n:10000
CASP4   10000 perm   2 sec   (5162 perm/sec)   p_kst 6.994000e-01   p_cons 3.087000e-01   p_joint 5.080000e-01

Outputting figure to mutsig2_images.part000000000030/CASP4.4_1166_10000_0.6994_0.3087_0.508.png
                gene_name: CASP4
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 33 percent done.
CAST
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.598329e-02	ci left: 2.021508e-01	ci right 2.182184e-01	k: 2101	n:10000
Cons ci ratio: 2.257142e-02	ci left: 7.424021e-01	ci right 7.594515e-01	k: 7510	n:10000
KS ci ratio: 1.082627e-01	ci left: 1.095910e-01	ci right 1.222338e-01	k: 1158	n:10000
CAST   10000 perm   2 sec   (4863 perm/sec)   p_kst 1.158000e-01   p_cons 7.510000e-01   p_joint 2.101000e-01

Joint ci ratio: 5.589096e-02	ci left: 1.918534e-01	ci right 2.029347e-01	k: 3947	n:20000
Cons ci ratio: 1.587946e-02	ci left: 7.468607e-01	ci right 7.588657e-01	k: 15058	n:20000
KS ci ratio: 7.661082e-02	ci left: 1.112981e-01	ci right 1.202140e-01	k: 2314	n:20000
CAST   20000 perm   5 sec   (4292 perm/sec)   p_kst 1.157000e-01   p_cons 7.529000e-01   p_joint 1.973500e-01

Outputting figure to mutsig2_images.part000000000030/CAST.4_2624_20000_0.1157_0.7529_0.19735.png
                gene_name: CAST
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 35 percent done.
CASZ1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.176417e-01	ci left: 1.261754e-02	ci right 1.747097e-02	k: 149	n:10000
Cons ci ratio: 1.031447e-01	ci left: 1.196532e-01	ci right 1.327654e-01	k: 1261	n:10000
KS ci ratio: 4.635411e-01	ci left: 5.460790e-03	ci right 8.835916e-03	k: 70	n:10000
CASZ1   10000 perm   3 sec   (3939 perm/sec)   p_kst 7.000000e-03   p_cons 1.261000e-01   p_joint 1.490000e-02

Joint ci ratio: 1.863283e-01	ci left: 1.963004e-02	ci right 2.371068e-02	k: 432	n:20000
Cons ci ratio: 7.316803e-02	ci left: 1.208892e-01	ci right 1.301200e-01	k: 2509	n:20000
KS ci ratio: 3.426791e-01	ci left: 5.387780e-03	ci right 7.659273e-03	k: 129	n:20000
CASZ1   20000 perm   6 sec   (3621 perm/sec)   p_kst 6.450000e-03   p_cons 1.254500e-01   p_joint 2.160000e-02

Joint ci ratio: 1.925026e-01	ci left: 1.231996e-02	ci right 1.497546e-02	k: 408	n:30000
Cons ci ratio: 5.962415e-02	ci left: 1.221658e-01	ci right 1.297068e-01	k: 3777	n:30000
KS ci ratio: 2.857593e-01	ci left: 5.343177e-03	ci right 7.154445e-03	k: 186	n:30000
CASZ1   30000 perm   9 sec   (3501 perm/sec)   p_kst 6.200000e-03   p_cons 1.259000e-01   p_joint 1.360000e-02

Joint ci ratio: 1.364174e-01	ci left: 1.884374e-02	ci right 2.162653e-02	k: 808	n:40000
Cons ci ratio: 5.210068e-02	ci left: 1.207356e-01	ci right 1.272191e-01	k: 4958	n:40000
KS ci ratio: 2.413810e-01	ci left: 5.759475e-03	ci right 7.363423e-03	k: 261	n:40000
CASZ1   40000 perm   12 sec   (3416 perm/sec)   p_kst 6.525000e-03   p_cons 1.239500e-01   p_joint 2.020000e-02

Joint ci ratio: 1.523950e-01	ci left: 1.206397e-02	ci right 1.407315e-02	k: 652	n:50000
Cons ci ratio: 4.653930e-02	ci left: 1.213606e-01	ci right 1.271631e-01	k: 6212	n:50000
KS ci ratio: 2.167325e-01	ci left: 5.795477e-03	ci right 7.222727e-03	k: 324	n:50000
CASZ1   50000 perm   15 sec   (3357 perm/sec)   p_kst 6.480000e-03   p_cons 1.242400e-01   p_joint 1.304000e-02

Joint ci ratio: 1.536372e-01	ci left: 9.908188e-03	ci right 1.157298e-02	k: 643	n:60000
Cons ci ratio: 4.273218e-02	ci left: 1.203654e-01	ci right 1.256378e-01	k: 7379	n:60000
KS ci ratio: 2.012533e-01	ci left: 5.650879e-03	ci right 6.930915e-03	k: 376	n:60000
CASZ1   60000 perm   18 sec   (3293 perm/sec)   p_kst 6.266667e-03   p_cons 1.229833e-01   p_joint 1.071667e-02

Joint ci ratio: 1.865025e-01	ci left: 5.686392e-03	ci right 6.869381e-03	k: 438	n:70000
Cons ci ratio: 3.971767e-02	ci left: 1.197257e-01	ci right 1.245914e-01	k: 8550	n:70000
KS ci ratio: 1.854427e-01	ci left: 5.754513e-03	ci right 6.944107e-03	k: 443	n:70000
CASZ1   70000 perm   22 sec   (3239 perm/sec)   p_kst 6.328571e-03   p_cons 1.221429e-01   p_joint 6.257143e-03

Joint ci ratio: 1.780113e-01	ci left: 5.488528e-03	ci right 6.572765e-03	k: 481	n:80000
Cons ci ratio: 3.716024e-02	ci left: 1.198387e-01	ci right 1.243887e-01	k: 9768	n:80000
KS ci ratio: 1.703562e-01	ci left: 6.014694e-03	ci right 7.146536e-03	k: 525	n:80000
CASZ1   80000 perm   25 sec   (3187 perm/sec)   p_kst 6.562500e-03   p_cons 1.221000e-01   p_joint 6.012500e-03

Joint ci ratio: 1.666369e-01	ci left: 5.601714e-03	ci right 6.630510e-03	k: 549	n:90000
Cons ci ratio: 3.494837e-02	ci left: 1.204970e-01	ci right 1.247941e-01	k: 11037	n:90000
KS ci ratio: 1.590982e-01	ci left: 6.166750e-03	ci right 7.243193e-03	k: 602	n:90000
CASZ1   90000 perm   29 sec   (3142 perm/sec)   p_kst 6.688889e-03   p_cons 1.226333e-01   p_joint 6.100000e-03

Joint ci ratio: 1.240302e-01	ci left: 9.276234e-03	ci right 1.051244e-02	k: 988	n:100000
Cons ci ratio: 3.315409e-02	ci left: 1.206129e-01	ci right 1.246890e-01	k: 12264	n:100000
KS ci ratio: 1.494808e-01	ci left: 6.319247e-03	ci right 7.349670e-03	k: 682	n:100000
CASZ1   100000 perm   32 sec   (3099 perm/sec)   p_kst 6.820000e-03   p_cons 1.226400e-01   p_joint 9.880000e-03

Joint ci ratio: 1.082451e-01	ci left: 1.114367e-02	ci right 1.242772e-02	k: 1295	n:110000
Cons ci ratio: 3.162523e-02	ci left: 1.206131e-01	ci right 1.244978e-01	k: 13480	n:110000
KS ci ratio: 1.420776e-01	ci left: 6.384226e-03	ci right 7.369317e-03	k: 755	n:110000
CASZ1   110000 perm   36 sec   (3057 perm/sec)   p_kst 6.863636e-03   p_cons 1.225455e-01   p_joint 1.177273e-02

Joint ci ratio: 1.123097e-01	ci left: 9.485248e-03	ci right 1.062195e-02	k: 1205	n:120000
Cons ci ratio: 3.030534e-02	ci left: 1.205092e-01	ci right 1.242257e-01	k: 14683	n:120000
KS ci ratio: 1.351024e-01	ci left: 6.495792e-03	ci right 7.444936e-03	k: 835	n:120000
CASZ1   120000 perm   40 sec   (3016 perm/sec)   p_kst 6.958333e-03   p_cons 1.223583e-01   p_joint 1.004167e-02

Joint ci ratio: 1.076750e-01	ci left: 9.548587e-03	ci right 1.064266e-02	k: 1311	n:130000
Cons ci ratio: 2.909941e-02	ci left: 1.207071e-01	ci right 1.242790e-01	k: 15923	n:130000
KS ci ratio: 1.299227e-01	ci left: 6.501857e-03	ci right 7.412652e-03	k: 903	n:130000
CASZ1   130000 perm   44 sec   (2974 perm/sec)   p_kst 6.946154e-03   p_cons 1.224846e-01   p_joint 1.008462e-02

Joint ci ratio: 8.432819e-02	ci left: 1.455860e-02	ci right 1.584730e-02	k: 2127	n:140000
Cons ci ratio: 2.804083e-02	ci left: 1.207726e-01	ci right 1.242144e-01	k: 17148	n:140000
KS ci ratio: 1.246523e-01	ci left: 6.576861e-03	ci right 7.458029e-03	k: 981	n:140000
CASZ1   140000 perm   48 sec   (2937 perm/sec)   p_kst 7.007143e-03   p_cons 1.224857e-01   p_joint 1.519286e-02

Joint ci ratio: 7.882475e-02	ci left: 1.558023e-02	ci right 1.686523e-02	k: 2432	n:150000
Cons ci ratio: 2.706982e-02	ci left: 1.209906e-01	ci right 1.243173e-01	k: 18397	n:150000
KS ci ratio: 1.210729e-01	ci left: 6.519637e-03	ci right 7.366257e-03	k: 1040	n:150000
CASZ1   150000 perm   52 sec   (2901 perm/sec)   p_kst 6.933333e-03   p_cons 1.226467e-01   p_joint 1.621333e-02

Joint ci ratio: 8.244860e-02	ci left: 1.335653e-02	ci right 1.451119e-02	k: 2228	n:160000
Cons ci ratio: 2.619544e-02	ci left: 1.211645e-01	ci right 1.243867e-01	k: 19643	n:160000
KS ci ratio: 1.184922e-01	ci left: 6.391020e-03	ci right 7.202007e-03	k: 1086	n:160000
CASZ1   160000 perm   56 sec   (2863 perm/sec)   p_kst 6.787500e-03   p_cons 1.227687e-01   p_joint 1.392500e-02

Joint ci ratio: 8.513441e-02	ci left: 1.179296e-02	ci right 1.284730e-02	k: 2093	n:170000
Cons ci ratio: 2.542494e-02	ci left: 1.211146e-01	ci right 1.242394e-01	k: 20854	n:170000
KS ci ratio: 1.155571e-01	ci left: 6.334836e-03	ci right 7.117423e-03	k: 1142	n:170000
CASZ1   170000 perm   60 sec   (2830 perm/sec)   p_kst 6.717647e-03   p_cons 1.226706e-01   p_joint 1.231176e-02

Joint ci ratio: 9.759398e-02	ci left: 8.449585e-03	ci right 9.321898e-03	k: 1598	n:180000
Cons ci ratio: 2.470463e-02	ci left: 1.211932e-01	ci right 1.242301e-01	k: 22087	n:180000
KS ci ratio: 1.120331e-01	ci left: 6.376921e-03	ci right 7.139095e-03	k: 1215	n:180000
CASZ1   180000 perm   64 sec   (2796 perm/sec)   p_kst 6.750000e-03   p_cons 1.227056e-01   p_joint 8.877778e-03

Joint ci ratio: 9.951753e-02	ci left: 7.696715e-03	ci right 8.507875e-03	k: 1538	n:190000
Cons ci ratio: 2.404814e-02	ci left: 1.212122e-01	ci right 1.241678e-01	k: 23310	n:190000
KS ci ratio: 1.092833e-01	ci left: 6.358575e-03	ci right 7.098701e-03	k: 1277	n:190000
CASZ1   190000 perm   69 sec   (2759 perm/sec)   p_kst 6.721053e-03   p_cons 1.226842e-01   p_joint 8.094737e-03

Joint ci ratio: 1.029643e-01	ci left: 6.824376e-03	ci right 7.570014e-03	k: 1438	n:200000
Cons ci ratio: 2.345116e-02	ci left: 1.211407e-01	ci right 1.240202e-01	k: 24515	n:200000
KS ci ratio: 1.068069e-01	ci left: 6.332534e-03	ci right 7.051876e-03	k: 1337	n:200000
CASZ1   200000 perm   73 sec   (2722 perm/sec)   p_kst 6.685000e-03   p_cons 1.225750e-01   p_joint 7.190000e-03

Joint ci ratio: 1.003809e-01	ci left: 6.847471e-03	ci right 7.575754e-03	k: 1513	n:210000
Cons ci ratio: 2.289602e-02	ci left: 1.210816e-01	ci right 1.238907e-01	k: 25721	n:210000
KS ci ratio: 1.044539e-01	ci left: 6.313783e-03	ci right 7.014224e-03	k: 1398	n:210000
CASZ1   210000 perm   78 sec   (2690 perm/sec)   p_kst 6.657143e-03   p_cons 1.224810e-01   p_joint 7.204762e-03

Joint ci ratio: 8.774266e-02	ci left: 8.596233e-03	ci right 9.389513e-03	k: 1977	n:220000
Cons ci ratio: 2.235017e-02	ci left: 1.213001e-01	ci right 1.240463e-01	k: 26987	n:220000
KS ci ratio: 1.026755e-01	ci left: 6.243740e-03	ci right 6.923904e-03	k: 1447	n:220000
CASZ1   220000 perm   83 sec   (2657 perm/sec)   p_kst 6.577273e-03   p_cons 1.226682e-01   p_joint 8.986364e-03

Joint ci ratio: 8.850773e-02	ci left: 8.082072e-03	ci right 8.834742e-03	k: 1944	n:230000
Cons ci ratio: 2.183717e-02	ci left: 1.215435e-01	ci right 1.242312e-01	k: 28263	n:230000
KS ci ratio: 1.006807e-01	ci left: 6.218029e-03	ci right 6.881455e-03	k: 1505	n:230000
CASZ1   230000 perm   88 sec   (2626 perm/sec)   p_kst 6.543478e-03   p_cons 1.228826e-01   p_joint 8.452174e-03

Joint ci ratio: 8.940824e-02	ci left: 7.590422e-03	ci right 8.304871e-03	k: 1906	n:240000
Cons ci ratio: 2.137692e-02	ci left: 1.215765e-01	ci right 1.242076e-01	k: 29493	n:240000
KS ci ratio: 9.860755e-02	ci left: 6.218966e-03	ci right 6.868038e-03	k: 1569	n:240000
CASZ1   240000 perm   92 sec   (2595 perm/sec)   p_kst 6.537500e-03   p_cons 1.228875e-01   p_joint 7.941667e-03

Outputting figure to mutsig2_images.part000000000030/CASZ1.4_5356_240000_0.0065375_0.12289_0.0079417.png
                gene_name: CASZ1
               theta_stop: 0.099 
                    nperm: 240000 
                     p_ks: 0.0065 
        ci_ks_bounds_left: 0.0062 
       ci_ks_bounds_right: 0.0069 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.0079 
     ci_joint_bounds_left: 0.0076 
    ci_joint_bounds_right: 0.0083 

Current progress: 37 percent done.
CATSPERB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.876884e-02	ci left: 6.404584e-01	ci right 6.592543e-01	k: 6499	n:10000
Cons ci ratio: 4.548520e-02	ci left: 4.163805e-01	ci right 4.358625e-01	k: 4261	n:10000
KS ci ratio: 4.522581e-02	ci left: 4.191717e-01	ci right 4.386698e-01	k: 4289	n:10000
CATSPERB   10000 perm   2 sec   (4895 perm/sec)   p_kst 4.289000e-01   p_cons 4.261000e-01   p_joint 6.499000e-01

Outputting figure to mutsig2_images.part000000000030/CATSPERB.4_3455_10000_0.4289_0.4261_0.6499.png
                gene_name: CATSPERB
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 39 percent done.
CBLL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.700042e-02	ci left: 6.689428e-01	ci right 6.873533e-01	k: 6782	n:10000
Cons ci ratio: 2.902211e-02	ci left: 6.364352e-01	ci right 6.552797e-01	k: 6459	n:10000
KS ci ratio: 4.045260e-02	ci left: 4.743609e-01	ci right 4.940483e-01	k: 4842	n:10000
CBLL1   10000 perm   2 sec   (5778 perm/sec)   p_kst 4.842000e-01   p_cons 6.459000e-01   p_joint 6.782000e-01

Outputting figure to mutsig2_images.part000000000030/CBLL1.4_1500_10000_0.4842_0.6459_0.6782.png
                gene_name: CBLL1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 41 percent done.
CBLN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.689143e-01	ci left: 4.676942e-02	ci right 5.549443e-02	k: 510	n:10000
Cons ci ratio: 1.256428e-01	ci left: 8.310086e-02	ci right 9.434008e-02	k: 886	n:10000
KS ci ratio: 1.121871e-01	ci left: 1.026640e-01	ci right 1.149650e-01	k: 1087	n:10000
CBLN2   10000 perm   2 sec   (5739 perm/sec)   p_kst 1.087000e-01   p_cons 8.860000e-02   p_joint 5.100000e-02

Joint ci ratio: 5.362397e-02	ci left: 2.051646e-01	ci right 2.165196e-01	k: 4216	n:20000
Cons ci ratio: 8.976383e-02	ci left: 8.312927e-02	ci right 9.099126e-02	k: 1740	n:20000
KS ci ratio: 7.727294e-02	ci left: 1.095776e-01	ci right 1.184349e-01	k: 2279	n:20000
CBLN2   20000 perm   4 sec   (5142 perm/sec)   p_kst 1.139500e-01   p_cons 8.700000e-02   p_joint 2.108000e-01

Outputting figure to mutsig2_images.part000000000030/CBLN2.4_687_20000_0.11395_0.087_0.2108.png
                gene_name: CBLN2
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.087 
      ci_cons_bounds_left: 0.083 
     ci_cons_bounds_right: 0.091 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 43 percent done.
CBS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.442278e-02	ci left: 4.279459e-01	ci right 4.474904e-01	k: 4377	n:10000
Cons ci ratio: 9.537790e-02	ci left: 1.375651e-01	ci right 1.514427e-01	k: 1444	n:10000
KS ci ratio: 2.725432e-02	ci left: 6.648137e-01	ci right 6.832848e-01	k: 6741	n:10000
CBS   10000 perm   2 sec   (5449 perm/sec)   p_kst 6.741000e-01   p_cons 1.444000e-01   p_joint 4.377000e-01

Outputting figure to mutsig2_images.part000000000030/CBS.4_1716_10000_0.6741_0.1444_0.4377.png
                gene_name: CBS
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 46 percent done.
CCBP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.051038e-02	ci left: 6.131152e-01	ci right 6.322133e-01	k: 6227	n:10000
Cons ci ratio: 2.850386e-02	ci left: 6.446834e-01	ci right 6.634268e-01	k: 6541	n:10000
KS ci ratio: 4.901550e-02	ci left: 3.804235e-01	ci right 3.996406e-01	k: 3900	n:10000
CCBP2   10000 perm   2 sec   (5526 perm/sec)   p_kst 3.900000e-01   p_cons 6.541000e-01   p_joint 6.227000e-01

Outputting figure to mutsig2_images.part000000000030/CCBP2.4_1159_10000_0.39_0.6541_0.6227.png
                gene_name: CCBP2
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 48 percent done.
CASC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.668601e-02	ci left: 2.481605e-01	ci right 2.653814e-01	k: 2567	n:10000
Cons ci ratio: 4.335612e-02	ci left: 4.399157e-01	ci right 4.595136e-01	k: 4497	n:10000
KS ci ratio: 1.102633e-01	ci left: 1.059801e-01	ci right 1.184468e-01	k: 1121	n:10000
CASC4   10000 perm   2 sec   (6389 perm/sec)   p_kst 1.121000e-01   p_cons 4.497000e-01   p_joint 2.567000e-01

Joint ci ratio: 7.047964e-02	ci left: 1.292088e-01	ci right 1.386979e-01	k: 2678	n:20000
Cons ci ratio: 2.996042e-02	ci left: 4.542225e-01	ci right 4.680888e-01	k: 9223	n:20000
KS ci ratio: 7.868207e-02	ci left: 1.060395e-01	ci right 1.147742e-01	k: 2207	n:20000
CASC4   20000 perm   4 sec   (5479 perm/sec)   p_kst 1.103500e-01   p_cons 4.611500e-01   p_joint 1.339000e-01

Outputting figure to mutsig2_images.part000000000030/CASC4.3_1351_20000_0.11035_0.46115_0.1339.png
                gene_name: CASC4
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 50 percent done.
CASP10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.021733e-02	ci left: 7.817816e-01	ci right 7.978492e-01	k: 7899	n:10000
KS ci ratio: 2.277655e-02	ci left: 7.389648e-01	ci right 7.560908e-01	k: 7476	n:10000
CASP10   10000 perm   2 sec   (5846 perm/sec)   p_kst 7.476000e-01   p_cons 7.899000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000030/CASP10.3_1760_10000_0.7476_0.7899_1.png
                gene_name: CASP10
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 52 percent done.
CASP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.021896e-02	ci left: 6.176367e-01	ci right 6.366892e-01	k: 6272	n:10000
Cons ci ratio: 5.190602e-02	ci left: 3.536657e-01	ci right 3.726141e-01	k: 3631	n:10000
KS ci ratio: 3.014148e-02	ci left: 6.188425e-01	ci right 6.378826e-01	k: 6284	n:10000
CASP5   10000 perm   2 sec   (5762 perm/sec)   p_kst 6.284000e-01   p_cons 3.631000e-01   p_joint 6.272000e-01

Outputting figure to mutsig2_images.part000000000030/CASP5.3_1380_10000_0.6284_0.3631_0.6272.png
                gene_name: CASP5
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 54 percent done.
CASP9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.124773e-01	ci left: 1.021764e-01	ci right 1.144528e-01	k: 1082	n:10000
Cons ci ratio: 2.709509e-01	ci left: 1.771967e-02	ci right 2.336449e-02	k: 204	n:10000
KS ci ratio: 4.912899e-02	ci left: 3.793287e-01	ci right 3.985361e-01	k: 3889	n:10000
CASP9   10000 perm   2 sec   (6098 perm/sec)   p_kst 3.889000e-01   p_cons 2.040000e-02   p_joint 1.082000e-01

Joint ci ratio: 7.842279e-02	ci left: 1.066782e-01	ci right 1.154352e-01	k: 2220	n:20000
Cons ci ratio: 1.765700e-01	ci left: 2.192330e-02	ci right 2.621660e-02	k: 480	n:20000
KS ci ratio: 3.453546e-02	ci left: 3.849760e-01	ci right 3.985555e-01	k: 7835	n:20000
CASP9   20000 perm   4 sec   (5291 perm/sec)   p_kst 3.917500e-01   p_cons 2.400000e-02   p_joint 1.110000e-01

Joint ci ratio: 5.886015e-02	ci left: 1.249959e-01	ci right 1.326095e-01	k: 3863	n:30000
Cons ci ratio: 1.463140e-01	ci left: 2.165471e-02	ci right 2.510512e-02	k: 700	n:30000
KS ci ratio: 2.831273e-02	ci left: 3.843087e-01	ci right 3.953793e-01	k: 11695	n:30000
CASP9   30000 perm   6 sec   (4998 perm/sec)   p_kst 3.898333e-01   p_cons 2.333333e-02   p_joint 1.287667e-01

Joint ci ratio: 5.645236e-02	ci left: 1.045300e-01	ci right 1.106271e-01	k: 4302	n:40000
Cons ci ratio: 1.254580e-01	ci left: 2.232840e-02	ci right 2.534127e-02	k: 952	n:40000
KS ci ratio: 2.457458e-02	ci left: 3.839936e-01	ci right 3.935726e-01	k: 15551	n:40000
CASP9   40000 perm   8 sec   (4816 perm/sec)   p_kst 3.887750e-01   p_cons 2.380000e-02   p_joint 1.075500e-01

Joint ci ratio: 4.083519e-02	ci left: 1.524329e-01	ci right 1.588072e-01	k: 7780	n:50000
Cons ci ratio: 1.114135e-01	ci left: 2.281236e-02	ci right 2.552327e-02	k: 1207	n:50000
KS ci ratio: 2.203483e-02	ci left: 3.833262e-01	ci right 3.918869e-01	k: 19380	n:50000
CASP9   50000 perm   11 sec   (4670 perm/sec)   p_kst 3.876000e-01   p_cons 2.414000e-02   p_joint 1.556000e-01

Joint ci ratio: 4.030480e-02	ci left: 1.334317e-01	ci right 1.389368e-01	k: 8170	n:60000
Cons ci ratio: 1.004563e-01	ci left: 2.350530e-02	ci right 2.600762e-02	k: 1484	n:60000
KS ci ratio: 2.006715e-02	ci left: 3.848300e-01	ci right 3.926474e-01	k: 23324	n:60000
CASP9   60000 perm   13 sec   (4522 perm/sec)   p_kst 3.887333e-01   p_cons 2.473333e-02   p_joint 1.361667e-01

Joint ci ratio: 4.076746e-02	ci left: 1.142879e-01	ci right 1.190582e-01	k: 8166	n:70000
Cons ci ratio: 9.348990e-02	ci left: 2.335340e-02	ci right 2.565767e-02	k: 1714	n:70000
KS ci ratio: 1.858834e-02	ci left: 3.848726e-01	ci right 3.921081e-01	k: 27194	n:70000
CASP9   70000 perm   16 sec   (4424 perm/sec)   p_kst 3.884857e-01   p_cons 2.448571e-02   p_joint 1.166571e-01

Outputting figure to mutsig2_images.part000000000030/CASP9.3_1287_70000_0.38849_0.024486_0.11666.png
                gene_name: CASP9
               theta_stop: 0.093 
                    nperm: 70000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.024 
      ci_cons_bounds_left: 0.023 
     ci_cons_bounds_right: 0.026 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 57 percent done.
CASQ2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.728151e-02	ci left: 8.299179e-01	ci right 8.444851e-01	k: 8373	n:10000
Cons ci ratio: 1.986367e-02	ci left: 7.876620e-01	ci right 8.035654e-01	k: 7957	n:10000
KS ci ratio: 3.994587e-02	ci left: 4.806559e-01	ci right 5.003496e-01	k: 4905	n:10000
CASQ2   10000 perm   2 sec   (5803 perm/sec)   p_kst 4.905000e-01   p_cons 7.957000e-01   p_joint 8.373000e-01

Outputting figure to mutsig2_images.part000000000030/CASQ2.3_1244_10000_0.4905_0.7957_0.8373.png
                gene_name: CASQ2
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 59 percent done.
CBL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.055197e-01	ci left: 3.148396e-02	ci right 3.879009e-02	k: 350	n:10000
Cons ci ratio: 4.804081e-02	ci left: 3.899802e-01	ci right 4.092783e-01	k: 3996	n:10000
KS ci ratio: 2.375804e-01	ci left: 2.334629e-02	ci right 2.973355e-02	k: 264	n:10000
CBL   10000 perm   2 sec   (5704 perm/sec)   p_kst 2.640000e-02   p_cons 3.996000e-01   p_joint 3.500000e-02

Joint ci ratio: 1.419064e-01	ci left: 3.413670e-02	ci right 3.939908e-02	k: 734	n:20000
Cons ci ratio: 3.408322e-02	ci left: 3.912563e-01	ci right 4.048734e-01	k: 7961	n:20000
KS ci ratio: 1.656068e-01	ci left: 2.498955e-02	ci right 2.954929e-02	k: 544	n:20000
CBL   20000 perm   4 sec   (5000 perm/sec)   p_kst 2.720000e-02   p_cons 3.980500e-01   p_joint 3.670000e-02

Joint ci ratio: 1.150836e-01	ci left: 3.508671e-02	ci right 3.940351e-02	k: 1116	n:30000
Cons ci ratio: 2.780168e-02	ci left: 3.929865e-01	ci right 4.040998e-01	k: 11956	n:30000
KS ci ratio: 1.335894e-01	ci left: 2.603335e-02	ci right 2.979216e-02	k: 836	n:30000
CBL   30000 perm   6 sec   (4642 perm/sec)   p_kst 2.786667e-02   p_cons 3.985333e-01   p_joint 3.720000e-02

Joint ci ratio: 1.147959e-01	ci left: 2.669672e-02	ci right 2.997223e-02	k: 1132	n:40000
Cons ci ratio: 2.398636e-02	ci left: 3.955433e-01	ci right 4.051712e-01	k: 16014	n:40000
KS ci ratio: 1.142780e-01	ci left: 2.693975e-02	ci right 3.022916e-02	k: 1142	n:40000
CBL   40000 perm   9 sec   (4482 perm/sec)   p_kst 2.855000e-02   p_cons 4.003500e-01   p_joint 2.830000e-02

Joint ci ratio: 8.810855e-02	ci left: 3.639972e-02	ci right 3.977418e-02	k: 1903	n:50000
Cons ci ratio: 2.205247e-02	ci left: 3.829470e-01	ci right 3.915061e-01	k: 19361	n:50000
KS ci ratio: 1.020208e-01	ci left: 2.721494e-02	ci right 3.016011e-02	k: 1433	n:50000
CBL   50000 perm   11 sec   (4360 perm/sec)   p_kst 2.866000e-02   p_cons 3.872200e-01   p_joint 3.806000e-02

Joint ci ratio: 9.646716e-02	ci left: 2.548981e-02	ci right 2.808957e-02	k: 1606	n:60000
Cons ci ratio: 2.005871e-02	ci left: 3.850296e-01	ci right 3.928478e-01	k: 23336	n:60000
KS ci ratio: 9.417375e-02	ci left: 2.674336e-02	ci right 2.940256e-02	k: 1683	n:60000
CBL   60000 perm   14 sec   (4260 perm/sec)   p_kst 2.805000e-02   p_cons 3.889333e-01   p_joint 2.676667e-02

Outputting figure to mutsig2_images.part000000000030/CBL.3_2785_60000_0.02805_0.38893_0.026767.png
                gene_name: CBL
               theta_stop: 0.096 
                    nperm: 60000 
                     p_ks: 0.028 
        ci_ks_bounds_left: 0.027 
       ci_ks_bounds_right: 0.029 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.027 
     ci_joint_bounds_left: 0.025 
    ci_joint_bounds_right: 0.028 

Current progress: 61 percent done.
CCBE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.080449e-02	ci left: 1.827459e-01	ci right 1.982349e-01	k: 1904	n:10000
Cons ci ratio: 4.384994e-02	ci left: 4.343291e-01	ci right 4.539035e-01	k: 4441	n:10000
KS ci ratio: 1.617042e-01	ci left: 5.099641e-02	ci right 6.006470e-02	k: 554	n:10000
CCBE1   10000 perm   2 sec   (6045 perm/sec)   p_kst 5.540000e-02   p_cons 4.441000e-01   p_joint 1.904000e-01

Joint ci ratio: 6.774517e-02	ci left: 1.385205e-01	ci right 1.482834e-01	k: 2867	n:20000
Cons ci ratio: 2.994837e-02	ci left: 4.544223e-01	ci right 4.682890e-01	k: 9227	n:20000
KS ci ratio: 1.143447e-01	ci left: 5.231807e-02	ci right 5.871192e-02	k: 1109	n:20000
CCBE1   20000 perm   4 sec   (5300 perm/sec)   p_kst 5.545000e-02   p_cons 4.613500e-01   p_joint 1.433500e-01

Joint ci ratio: 6.508654e-02	ci left: 1.043449e-01	ci right 1.113979e-01	k: 3235	n:30000
Cons ci ratio: 2.535048e-02	ci left: 4.378673e-01	ci right 4.491436e-01	k: 13305	n:30000
KS ci ratio: 9.469479e-02	ci left: 5.146904e-02	ci right 5.661776e-02	k: 1620	n:30000
CCBE1   30000 perm   6 sec   (5011 perm/sec)   p_kst 5.400000e-02   p_cons 4.435000e-01   p_joint 1.078333e-01

Outputting figure to mutsig2_images.part000000000030/CCBE1.3_1265_30000_0.054_0.4435_0.10783.png
                gene_name: CCBE1
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.054 
        ci_ks_bounds_left: 0.051 
       ci_ks_bounds_right: 0.057 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 63 percent done.
CARKD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.636482e-02	ci left: 5.275679e-01	ci right 5.472103e-01	k: 5374	n:10000
Cons ci ratio: 1.546038e-01	ci left: 5.571306e-02	ci right 6.514503e-02	k: 603	n:10000
KS ci ratio: 8.958253e-02	ci left: 1.534534e-01	ci right 1.679449e-01	k: 1606	n:10000
CARKD   10000 perm   2 sec   (6354 perm/sec)   p_kst 1.606000e-01   p_cons 6.030000e-02   p_joint 5.374000e-01

Joint ci ratio: 1.371867e-02	ci left: 7.976715e-01	ci right 8.087402e-01	k: 16065	n:20000
Cons ci ratio: 9.988490e-02	ci left: 6.791774e-02	ci right 7.510743e-02	k: 1429	n:20000
KS ci ratio: 6.290290e-02	ci left: 1.574610e-01	ci right 1.677373e-01	k: 3251	n:20000
CARKD   20000 perm   4 sec   (5553 perm/sec)   p_kst 1.625500e-01   p_cons 7.145000e-02   p_joint 8.032500e-01

Outputting figure to mutsig2_images.part000000000030/CARKD.2_1213_20000_0.16255_0.07145_0.80325.png
                gene_name: CARKD
               theta_stop: 0.100 
                    nperm: 20000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.071 
      ci_cons_bounds_left: 0.068 
     ci_cons_bounds_right: 0.075 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 65 percent done.
CARNS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.138375e-01	ci left: 9.993440e-02	ci right 1.120962e-01	k: 1059	n:10000
Cons ci ratio: 9.338490e-02	ci left: 1.427601e-01	ci right 1.568446e-01	k: 1497	n:10000
KS ci ratio: 6.879415e-02	ci left: 2.365957e-01	ci right 2.535531e-01	k: 2450	n:10000
CARNS1   10000 perm   2 sec   (5334 perm/sec)   p_kst 2.450000e-01   p_cons 1.497000e-01   p_joint 1.059000e-01

Joint ci ratio: 5.423567e-02	ci left: 2.014523e-01	ci right 2.127330e-01	k: 4141	n:20000
Cons ci ratio: 6.608606e-02	ci left: 1.446337e-01	ci right 1.545684e-01	k: 2991	n:20000
KS ci ratio: 4.887638e-02	ci left: 2.373661e-01	ci right 2.493086e-01	k: 4866	n:20000
CARNS1   20000 perm   4 sec   (4613 perm/sec)   p_kst 2.433000e-01   p_cons 1.495500e-01   p_joint 2.070500e-01

Outputting figure to mutsig2_images.part000000000030/CARNS1.2_2889_20000_0.2433_0.14955_0.20705.png
                gene_name: CARNS1
               theta_stop: 0.066 
                    nperm: 20000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 67 percent done.
CASK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.388181e-02	ci left: 3.366725e-01	ci right 3.554172e-01	k: 3460	n:10000
Cons ci ratio: 7.098191e-02	ci left: 2.253355e-01	ci right 2.420199e-01	k: 2336	n:10000
KS ci ratio: 5.362097e-02	ci left: 3.388581e-01	ci right 3.576304e-01	k: 3482	n:10000
CASK   10000 perm   2 sec   (5336 perm/sec)   p_kst 3.482000e-01   p_cons 2.336000e-01   p_joint 3.460000e-01

Outputting figure to mutsig2_images.part000000000030/CASK.2_2889_10000_0.3482_0.2336_0.346.png
                gene_name: CASK
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 70 percent done.
CASKIN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.920191e-02	ci left: 7.986185e-01	ci right 8.142026e-01	k: 8065	n:10000
KS ci ratio: 9.166397e-02	ci left: 1.474675e-01	ci right 1.617343e-01	k: 1545	n:10000
CASKIN1   10000 perm   2 sec   (4514 perm/sec)   p_kst 1.545000e-01   p_cons 8.065000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000030/CASKIN1.2_4376_10000_0.1545_0.8065_1.png
                gene_name: CASKIN1
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
CASKIN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.426972e-02	ci left: 4.296413e-01	ci right 4.491941e-01	k: 4394	n:10000
KS ci ratio: 2.815829e-02	ci left: 6.502174e-01	ci right 6.688896e-01	k: 6596	n:10000
CASKIN2   10000 perm   2 sec   (4767 perm/sec)   p_kst 6.596000e-01   p_cons 4.394000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000030/CASKIN2.2_3685_10000_0.6596_0.4394_1.png
                gene_name: CASKIN2
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 74 percent done.
CASP7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.067940e-02	ci left: 6.105032e-01	ci right 6.296268e-01	k: 6201	n:10000
Cons ci ratio: 4.975474e-02	ci left: 3.733580e-01	ci right 3.925103e-01	k: 3829	n:10000
KS ci ratio: 1.708459e-02	ci left: 8.330730e-01	ci right 8.475282e-01	k: 8404	n:10000
CASP7   10000 perm   2 sec   (6189 perm/sec)   p_kst 8.404000e-01   p_cons 3.829000e-01   p_joint 6.201000e-01

Outputting figure to mutsig2_images.part000000000030/CASP7.2_1117_10000_0.8404_0.3829_0.6201.png
                gene_name: CASP7
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 76 percent done.
CASP8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.657006e-02	ci left: 5.247648e-01	ci right 5.444151e-01	k: 5346	n:10000
KS ci ratio: 2.239042e-02	ci left: 7.454356e-01	ci right 7.624162e-01	k: 7540	n:10000
CASP8   10000 perm   2 sec   (5951 perm/sec)   p_kst 7.540000e-01   p_cons 5.346000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000030/CASP8.2_1753_10000_0.754_0.5346_1.png
                gene_name: CASP8
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
CATSPER2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.407096e-02	ci left: 5.598265e-01	ci right 5.793330e-01	k: 5696	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
CATSPER2   10000 perm   2 sec   (5681 perm/sec)   p_kst 1   p_cons 5.696000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000030/CATSPER2.2_1680_10000_1_0.5696_1.png
                gene_name: CATSPER2
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
CATSPER3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.393882e-02	ci left: 2.112229e-01	ci right 2.275409e-01	k: 2193	n:10000
KS ci ratio: 1.713548e-02	ci left: 8.322587e-01	ci right 8.467429e-01	k: 8396	n:10000
CATSPER3   10000 perm   2 sec   (6375 perm/sec)   p_kst 8.396000e-01   p_cons 2.193000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000030/CATSPER3.2_1229_10000_0.8396_0.2193_1.png
                gene_name: CATSPER3
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
CBARA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.527596e-02	ci left: 8.614127e-01	ci right 8.747721e-01	k: 8682	n:10000
Cons ci ratio: 4.622758e-02	ci left: 4.085072e-01	ci right 4.279405e-01	k: 4182	n:10000
KS ci ratio: 3.967515e-02	ci left: 4.840539e-01	ci right 5.037497e-01	k: 4939	n:10000
CBARA1   10000 perm   2 sec   (5925 perm/sec)   p_kst 4.939000e-01   p_cons 4.182000e-01   p_joint 8.682000e-01

Outputting figure to mutsig2_images.part000000000030/CBARA1.2_1481_10000_0.4939_0.4182_0.8682.png
                gene_name: CBARA1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 85 percent done.
CBFA2T3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.260207e-02	ci left: 4.485975e-01	ci right 4.682268e-01	k: 4584	n:10000
Cons ci ratio: 3.977048e-02	ci left: 4.828546e-01	ci right 5.025497e-01	k: 4927	n:10000
KS ci ratio: 4.790096e-02	ci left: 3.913742e-01	ci right 4.106835e-01	k: 4010	n:10000
CBFA2T3   10000 perm   2 sec   (5629 perm/sec)   p_kst 4.010000e-01   p_cons 4.927000e-01   p_joint 4.584000e-01

Outputting figure to mutsig2_images.part000000000030/CBFA2T3.2_2010_10000_0.401_0.4927_0.4584.png
                gene_name: CBFA2T3
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 87 percent done.
CBFB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.553540e-02	ci left: 2.547867e-01	ci right 2.721513e-01	k: 2634	n:10000
Cons ci ratio: 5.877102e-02	ci left: 2.987602e-01	ci right 3.169519e-01	k: 3078	n:10000
KS ci ratio: 7.570976e-02	ci left: 2.033338e-01	ci right 2.194347e-01	k: 2113	n:10000
CBFB   10000 perm   1 sec   (6674 perm/sec)   p_kst 2.113000e-01   p_cons 3.078000e-01   p_joint 2.634000e-01

Outputting figure to mutsig2_images.part000000000030/CBFB.2_619_10000_0.2113_0.3078_0.2634.png
                gene_name: CBFB
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 89 percent done.
CBLN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.863244e-03	ci left: 9.574375e-01	ci right 9.650907e-01	k: 9614	n:10000
Cons ci ratio: 2.642083e-02	ci left: 6.784124e-01	ci right 6.966782e-01	k: 6876	n:10000
KS ci ratio: 2.228181e-02	ci left: 7.472560e-01	ci right 7.641948e-01	k: 7558	n:10000
CBLN3   10000 perm   2 sec   (6342 perm/sec)   p_kst 7.558000e-01   p_cons 6.876000e-01   p_joint 9.614000e-01

Outputting figure to mutsig2_images.part000000000030/CBLN3.2_630_10000_0.7558_0.6876_0.9614.png
                gene_name: CBLN3
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 91 percent done.
CBWD6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.366646e-01	ci left: 2.353468e-02	ci right 2.994503e-02	k: 266	n:10000
Cons ci ratio: 4.127937e-02	ci left: 4.642721e-01	ci right 4.839430e-01	k: 4741	n:10000
KS ci ratio: 2.366646e-01	ci left: 2.353468e-02	ci right 2.994503e-02	k: 266	n:10000
CBWD6   10000 perm   2 sec   (6126 perm/sec)   p_kst 2.660000e-02   p_cons 4.741000e-01   p_joint 2.660000e-02

Joint ci ratio: 1.662350e-01	ci left: 2.479765e-02	ci right 2.934125e-02	k: 540	n:20000
Cons ci ratio: 2.933212e-02	ci left: 4.647611e-01	ci right 4.786471e-01	k: 9434	n:20000
KS ci ratio: 1.662350e-01	ci left: 2.479765e-02	ci right 2.934125e-02	k: 540	n:20000
CBWD6   20000 perm   4 sec   (5393 perm/sec)   p_kst 2.700000e-02   p_cons 4.717000e-01   p_joint 2.700000e-02

Joint ci ratio: 1.547767e-01	ci left: 1.931113e-02	ci right 2.258257e-02	k: 627	n:30000
Cons ci ratio: 2.376363e-02	ci left: 4.699347e-01	ci right 4.812700e-01	k: 14268	n:30000
KS ci ratio: 1.349218e-01	ci left: 2.551747e-02	ci right 2.924148e-02	k: 820	n:30000
CBWD6   30000 perm   6 sec   (5115 perm/sec)   p_kst 2.733333e-02   p_cons 4.756000e-01   p_joint 2.090000e-02

Joint ci ratio: 1.334992e-01	ci left: 1.968976e-02	ci right 2.253036e-02	k: 843	n:40000
Cons ci ratio: 2.074906e-02	ci left: 4.666228e-01	ci right 4.764314e-01	k: 18861	n:40000
KS ci ratio: 1.171031e-01	ci left: 2.565209e-02	ci right 2.886704e-02	k: 1089	n:40000
CBWD6   40000 perm   8 sec   (4936 perm/sec)   p_kst 2.722500e-02   p_cons 4.715250e-01   p_joint 2.107500e-02

Joint ci ratio: 1.030613e-01	ci left: 2.666892e-02	ci right 2.958621e-02	k: 1405	n:50000
Cons ci ratio: 1.860136e-02	ci left: 4.659969e-01	ci right 4.747665e-01	k: 23519	n:50000
KS ci ratio: 1.030613e-01	ci left: 2.666892e-02	ci right 2.958621e-02	k: 1405	n:50000
CBWD6   50000 perm   10 sec   (4785 perm/sec)   p_kst 2.810000e-02   p_cons 4.703800e-01   p_joint 2.810000e-02

Joint ci ratio: 9.388732e-02	ci left: 2.690621e-02	ci right 2.957302e-02	k: 1693	n:60000
Cons ci ratio: 1.700848e-02	ci left: 4.655665e-01	ci right 4.735697e-01	k: 28174	n:60000
KS ci ratio: 9.388732e-02	ci left: 2.690621e-02	ci right 2.957302e-02	k: 1693	n:60000
CBWD6   60000 perm   13 sec   (4658 perm/sec)   p_kst 2.821667e-02   p_cons 4.695667e-01   p_joint 2.821667e-02

Outputting figure to mutsig2_images.part000000000030/CBWD6.2_1248_60000_0.028217_0.46957_0.028217.png
                gene_name: CBWD6
               theta_stop: 0.094 
                    nperm: 60000 
                     p_ks: 0.028 
        ci_ks_bounds_left: 0.027 
       ci_ks_bounds_right: 0.030 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.028 
     ci_joint_bounds_left: 0.027 
    ci_joint_bounds_right: 0.030 

Current progress: 93 percent done.
CBX8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.609721e-02	ci left: 2.515227e-01	ci right 2.688172e-01	k: 2601	n:10000
Cons ci ratio: 4.452217e-02	ci left: 4.268489e-01	ci right 4.463880e-01	k: 4366	n:10000
KS ci ratio: 1.175954e-01	ci left: 9.408985e-02	ci right 1.059443e-01	k: 999	n:10000
CBX8   10000 perm   2 sec   (6253 perm/sec)   p_kst 9.990000e-02   p_cons 4.366000e-01   p_joint 2.601000e-01

Joint ci ratio: 4.257369e-02	ci left: 2.913181e-01	ci right 3.040408e-01	k: 5953	n:20000
Cons ci ratio: 3.149749e-02	ci left: 4.295114e-01	ci right 4.433071e-01	k: 8728	n:20000
KS ci ratio: 8.364291e-02	ci left: 9.479621e-02	ci right 1.031208e-01	k: 1978	n:20000
CBX8   20000 perm   4 sec   (5386 perm/sec)   p_kst 9.890000e-02   p_cons 4.364000e-01   p_joint 2.976500e-01

Outputting figure to mutsig2_images.part000000000030/CBX8.2_1190_20000_0.0989_0.4364_0.29765.png
                gene_name: CBX8
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.099 
        ci_ks_bounds_left: 0.095 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 96 percent done.
CCBL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.056613e-02	ci left: 4.729622e-01	ci right 4.926478e-01	k: 4828	n:10000
KS ci ratio: 2.362165e-02	ci left: 7.248183e-01	ci right 7.422455e-01	k: 7336	n:10000
CCBL2   10000 perm   2 sec   (6313 perm/sec)   p_kst 7.336000e-01   p_cons 4.828000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000030/CCBL2.2_1417_10000_0.7336_0.4828_1.png
                gene_name: CCBL2
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
CCDC102A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.508232e-02	ci left: 5.453952e-01	ci right 5.649726e-01	k: 5552	n:10000
Cons ci ratio: 5.579244e-02	ci left: 3.211817e-01	ci right 3.397172e-01	k: 3304	n:10000
KS ci ratio: 4.584033e-02	ci left: 4.125930e-01	ci right 4.320522e-01	k: 4223	n:10000
CCDC102A   10000 perm   2 sec   (6040 perm/sec)   p_kst 4.223000e-01   p_cons 3.304000e-01   p_joint 5.552000e-01

Outputting figure to mutsig2_images.part000000000030/CCDC102A.2_1685_10000_0.4223_0.3304_0.5552.png
                gene_name: CCDC102A
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.56 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000030
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 30 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1431>
Subject: Job 8003942: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1431>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000031> was used as the working directory.
Started at Sun Nov 11 15:04:32 2012
Results reported at Sun Nov 11 15:14:23 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000031.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000031.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 31  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000031.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    731.78 sec.
    Max Memory :      4713 MB
    Max Swap   :      7089 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
31
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 31
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 31: processing genes 2715 - 2805
Calculating significance of each gene.
Using projection method.
2715	CCDC109A	2.434509e-01
2716	CCDC109B	1
2717	CCDC11	6.457828e-01
2718	CCDC110	1.687398e-01
2719	CCDC111	2.964991e-01
2720	CCDC112	8.766611e-01
2721	CCDC113	4.668067e-01
2722	CCDC114	1
2723	CCDC115	1.332222e-01
2724	CCDC116	1
2725	CCDC117	1
2726	CCDC12	1
2727	CCDC120	6.470117e-01
2728	CCDC121	3.818806e-02
2729	CCDC122	4.248646e-01
2730	CCDC123	2.457441e-01
2731	CCDC124	1
2732	CCDC125	2.942765e-01
2733	CCDC126	1
2734	CCDC127	6.838333e-01
2735	CCDC129	1.016214e-01
2736	CCDC13	8.567649e-01
2737	CCDC130	1
2738	CCDC132	9.329999e-01
2739	CCDC134	1
2740	CCDC135	5.174955e-01
2741	CCDC136	6.214308e-01
2742	CCDC137	1.922091e-01
2743	CCDC138	6.408900e-01
2744	CCDC14	9.346696e-01
2745	CCDC140	1
2746	CCDC141	3.287536e-01
2747	CCDC142	1
2748	CCDC144A	9.329707e-01
2749	CCDC144B	5.393376e-01
2750	CCDC144NL	4.394165e-01
2751	CCDC146	5.823931e-01
2752	CCDC147	2.147908e-01
2753	CCDC148	4.345311e-01
2754	CCDC149	1
2755	CCDC15	2.381153e-01
2756	CCDC150	9.614684e-01
2757	CCDC151	1
2758	CCDC153	1
2759	CCDC155	3.486110e-01
2760	CCDC157	9.533778e-01
2761	CCDC158	5.106327e-01
2762	CCDC159	2.896030e-01
2763	CCDC17	1
2764	CCDC18	1
2765	CCDC19	2.862623e-01
2766	CCDC21	1
2767	CCDC22	3.466639e-01
2768	CCDC23	1
2769	CCDC24	7.311206e-01
2770	CCDC25	1
2771	CCDC27	8.411875e-01
2772	CCDC28A	3.764348e-01
2773	CCDC28B	3.163297e-01
2774	CCDC3	1
2775	CCDC30	8.690519e-01
2776	CCDC33	9.611992e-01
2777	CCDC34	1
2778	CCDC36	9.068478e-01
2779	CCDC37	1
2780	CCDC38	3.697073e-02
2781	CCDC39	1.107401e-02
2782	CCDC40	1
2783	CCDC41	5.907329e-01
2784	CCDC42	1
2785	CCDC43	3.496050e-01
2786	CCDC45	9.473170e-01
2787	CCDC46	4.270753e-01
2788	CCDC47	2.637141e-01
2789	CCDC48	1
2790	CCDC50	6.901451e-01
2791	CCDC51	3.054139e-01
2792	CCDC52	3.810316e-01
2793	CCDC53	1
2794	CCDC54	1
2795	CCDC55	5.825766e-01
2796	CCDC56	1
2797	CCDC57	2.834599e-01
2798	CCDC58	1
2799	CCDC59	1
2800	CCDC6	5.464306e-01
2801	CCDC60	1.367567e-01
2802	CCDC61	5.237808e-01
2803	CCDC62	1
2804	CCDC63	1.455852e-01
2805	CCDC64	8.335561e-01
Done

Running MutSig 2:
Scatter job 31: processing genes 2715 - 2805
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CCDC141
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.793088e-02	ci left: 3.910755e-01	ci right 4.103824e-01	k: 4007	n:10000
Cons ci ratio: 1.218871e-02	ci left: 9.061740e-01	ci right 9.173848e-01	k: 9119	n:10000
KS ci ratio: 9.198086e-02	ci left: 1.465847e-01	ci right 1.608177e-01	k: 1536	n:10000
CCDC141   10000 perm   2 sec   (4009 perm/sec)   p_kst 1.536000e-01   p_cons 9.119000e-01   p_joint 4.007000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC141.16_2676_10000_0.1536_0.9119_0.4007.png
                gene_name: CCDC141
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 2 percent done.
CCDC39
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.092424e-02	ci left: 9.227580e-01	ci right 9.329911e-01	k: 9280	n:10000
Cons ci ratio: 8.605580e-03	ci left: 9.498142e-01	ci right 9.581188e-01	k: 9541	n:10000
KS ci ratio: 2.851646e-02	ci left: 6.444822e-01	ci right 6.632281e-01	k: 6539	n:10000
CCDC39   10000 perm   2 sec   (4373 perm/sec)   p_kst 6.539000e-01   p_cons 9.541000e-01   p_joint 9.280000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC39.13_2906_10000_0.6539_0.9541_0.928.png
                gene_name: CCDC39
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 4 percent done.
CCDC129
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.711691e-02	ci left: 3.109600e-01	ci right 3.293449e-01	k: 3201	n:10000
Cons ci ratio: 1.047675e-02	ci left: 9.283358e-01	ci right 9.382100e-01	k: 9334	n:10000
KS ci ratio: 1.015846e-01	ci left: 1.229780e-01	ci right 1.362386e-01	k: 1295	n:10000
CCDC129   10000 perm   2 sec   (4203 perm/sec)   p_kst 1.295000e-01   p_cons 9.334000e-01   p_joint 3.201000e-01

Joint ci ratio: 4.826055e-02	ci left: 2.420269e-01	ci right 2.540464e-01	k: 4960	n:20000
Cons ci ratio: 7.283378e-03	ci left: 9.319557e-01	ci right 9.388171e-01	k: 18709	n:20000
KS ci ratio: 7.239501e-02	ci left: 1.232023e-01	ci right 1.325062e-01	k: 2556	n:20000
CCDC129   20000 perm   5 sec   (3843 perm/sec)   p_kst 1.278000e-01   p_cons 9.354500e-01   p_joint 2.480000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC129.12_3187_20000_0.1278_0.93545_0.248.png
                gene_name: CCDC129
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 7 percent done.
CCDC110
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.980736e-02	ci left: 2.914241e-01	ci right 3.094923e-01	k: 3004	n:10000
Cons ci ratio: 5.215104e-03	ci left: 9.799492e-01	ci right 9.851642e-01	k: 9827	n:10000
KS ci ratio: 1.028186e-01	ci left: 1.203376e-01	ci right 1.334806e-01	k: 1268	n:10000
CCDC110   10000 perm   2 sec   (4434 perm/sec)   p_kst 1.268000e-01   p_cons 9.827000e-01   p_joint 3.004000e-01

Joint ci ratio: 4.886975e-02	ci left: 2.374157e-01	ci right 2.493590e-01	k: 4867	n:20000
Cons ci ratio: 3.741666e-03	ci left: 9.802183e-01	ci right 9.839397e-01	k: 19643	n:20000
KS ci ratio: 7.150001e-02	ci left: 1.259590e-01	ci right 1.353487e-01	k: 2612	n:20000
CCDC110   20000 perm   5 sec   (4034 perm/sec)   p_kst 1.306000e-01   p_cons 9.821500e-01   p_joint 2.433500e-01

Outputting figure to mutsig2_images.part000000000031/CCDC110.6_2530_20000_0.1306_0.98215_0.24335.png
                gene_name: CCDC110
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 9 percent done.
CCDC132
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.210554e-01	ci left: 8.912712e-02	ci right 1.007101e-01	k: 948	n:10000
Cons ci ratio: 1.013601e-01	ci left: 1.234670e-01	ci right 1.367493e-01	k: 1300	n:10000
KS ci ratio: 1.161806e-01	ci left: 9.623212e-02	ci right 1.082007e-01	k: 1021	n:10000
CCDC132   10000 perm   2 sec   (4664 perm/sec)   p_kst 1.021000e-01   p_cons 1.300000e-01   p_joint 9.480000e-02

Joint ci ratio: 1.043980e-01	ci left: 6.240220e-02	ci right 6.932467e-02	k: 1316	n:20000
Cons ci ratio: 6.984875e-02	ci left: 1.312774e-01	ci right 1.408286e-01	k: 2720	n:20000
KS ci ratio: 8.269549e-02	ci left: 9.680801e-02	ci right 1.052084e-01	k: 2019	n:20000
CCDC132   20000 perm   5 sec   (4210 perm/sec)   p_kst 1.009500e-01   p_cons 1.360000e-01   p_joint 6.580000e-02

Joint ci ratio: 1.005334e-01	ci left: 4.580345e-02	ci right 5.068451e-02	k: 1446	n:30000
Cons ci ratio: 5.696296e-02	ci left: 1.324361e-01	ci right 1.402344e-01	k: 4089	n:30000
KS ci ratio: 6.782018e-02	ci left: 9.679156e-02	ci right 1.036194e-01	k: 3005	n:30000
CCDC132   30000 perm   7 sec   (4013 perm/sec)   p_kst 1.001667e-01   p_cons 1.363000e-01   p_joint 4.820000e-02

Joint ci ratio: 7.603951e-02	ci left: 5.992617e-02	ci right 6.468762e-02	k: 2491	n:40000
Cons ci ratio: 4.877035e-02	ci left: 1.356483e-01	ci right 1.424542e-01	k: 5561	n:40000
KS ci ratio: 5.900452e-02	ci left: 9.643522e-02	ci right 1.023231e-01	k: 3974	n:40000
CCDC132   40000 perm   10 sec   (3884 perm/sec)   p_kst 9.935000e-02   p_cons 1.390250e-01   p_joint 6.227500e-02

Outputting figure to mutsig2_images.part000000000031/CCDC132.6_3049_40000_0.09935_0.13903_0.062275.png
                gene_name: CCDC132
               theta_stop: 0.076 
                    nperm: 40000 
                     p_ks: 0.099 
        ci_ks_bounds_left: 0.096 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.062 
     ci_joint_bounds_left: 0.060 
    ci_joint_bounds_right: 0.065 

Current progress: 11 percent done.
CCDC33
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.159332e-02	ci left: 3.564494e-01	ci right 3.754288e-01	k: 3659	n:10000
Cons ci ratio: 5.434929e-02	ci left: 3.327988e-01	ci right 3.514933e-01	k: 3421	n:10000
KS ci ratio: 6.833256e-02	ci left: 2.390661e-01	ci right 2.560812e-01	k: 2475	n:10000
CCDC33   10000 perm   2 sec   (4883 perm/sec)   p_kst 2.475000e-01   p_cons 3.421000e-01   p_joint 3.659000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC33.6_2607_10000_0.2475_0.3421_0.3659.png
                gene_name: CCDC33
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 13 percent done.
CCDC123
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.849218e-01	ci left: 3.901215e-02	ci right 4.705680e-02	k: 429	n:10000
Cons ci ratio: 1.360009e-01	ci left: 7.146123e-02	ci right 8.198693e-02	k: 766	n:10000
KS ci ratio: 8.866392e-02	ci left: 1.562022e-01	ci right 1.707944e-01	k: 1634	n:10000
CCDC123   10000 perm   2 sec   (4823 perm/sec)   p_kst 1.634000e-01   p_cons 7.660000e-02   p_joint 4.290000e-02

Joint ci ratio: 8.948263e-02	ci left: 8.361907e-02	ci right 9.150132e-02	k: 1750	n:20000
Cons ci ratio: 1.010309e-01	ci left: 6.645278e-02	ci right 7.357284e-02	k: 1399	n:20000
KS ci ratio: 6.235421e-02	ci left: 1.598304e-01	ci right 1.701672e-01	k: 3299	n:20000
CCDC123   20000 perm   5 sec   (4400 perm/sec)   p_kst 1.649500e-01   p_cons 6.995000e-02   p_joint 8.750000e-02

Joint ci ratio: 7.659224e-02	ci left: 7.721617e-02	ci right 8.339873e-02	k: 2408	n:30000
Cons ci ratio: 7.961428e-02	ci left: 7.178233e-02	ci right 7.776700e-02	k: 2242	n:30000
KS ci ratio: 4.958643e-02	ci left: 1.681079e-01	ci right 1.766890e-01	k: 5171	n:30000
CCDC123   30000 perm   7 sec   (4259 perm/sec)   p_kst 1.723667e-01   p_cons 7.473333e-02   p_joint 8.026667e-02

Outputting figure to mutsig2_images.part000000000031/CCDC123.5_2428_30000_0.17237_0.074733_0.080267.png
                gene_name: CCDC123
               theta_stop: 0.080 
                    nperm: 30000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.075 
      ci_cons_bounds_left: 0.072 
     ci_cons_bounds_right: 0.078 
                  p_joint: 0.080 
     ci_joint_bounds_left: 0.077 
    ci_joint_bounds_right: 0.083 

Current progress: 15 percent done.
CCDC146
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.024244e-02	ci left: 3.687815e-01	ci right 3.878894e-01	k: 3783	n:10000
Cons ci ratio: 9.600000e-02	ci left: 1.359974e-01	ci right 1.498113e-01	k: 1428	n:10000
KS ci ratio: 2.648233e-02	ci left: 6.774048e-01	ci right 6.956864e-01	k: 6866	n:10000
CCDC146   10000 perm   2 sec   (5434 perm/sec)   p_kst 6.866000e-01   p_cons 1.428000e-01   p_joint 3.783000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC146.5_2940_10000_0.6866_0.1428_0.3783.png
                gene_name: CCDC146
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 17 percent done.
CCDC147
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.302402e-02	ci left: 3.439253e-01	ci right 3.627602e-01	k: 3533	n:10000
Cons ci ratio: 9.977908e-02	ci left: 1.269892e-01	ci right 1.404250e-01	k: 1336	n:10000
KS ci ratio: 1.621682e-02	ci left: 8.468243e-01	ci right 8.607689e-01	k: 8539	n:10000
CCDC147   10000 perm   2 sec   (5016 perm/sec)   p_kst 8.539000e-01   p_cons 1.336000e-01   p_joint 3.533000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC147.5_2691_10000_0.8539_0.1336_0.3533.png
                gene_name: CCDC147
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 20 percent done.
CCDC15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.241384e-02	ci left: 4.507933e-01	ci right 4.704296e-01	k: 4606	n:10000
KS ci ratio: 2.040594e-02	ci left: 7.786397e-01	ci right 7.947930e-01	k: 7868	n:10000
CCDC15   10000 perm   2 sec   (4721 perm/sec)   p_kst 7.868000e-01   p_cons 4.606000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000031/CCDC15.5_2916_10000_0.7868_0.4606_1.png
                gene_name: CCDC15
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 22 percent done.
CCDC150
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.404922e-02	ci left: 2.636916e-01	ci right 2.812411e-01	k: 2724	n:10000
Cons ci ratio: 5.098745e-02	ci left: 3.619185e-01	ci right 3.809565e-01	k: 3714	n:10000
KS ci ratio: 7.010154e-02	ci left: 2.297793e-01	ci right 2.465735e-01	k: 2381	n:10000
CCDC150   10000 perm   2 sec   (4407 perm/sec)   p_kst 2.381000e-01   p_cons 3.714000e-01   p_joint 2.724000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC150.5_3418_10000_0.2381_0.3714_0.2724.png
                gene_name: CCDC150
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 24 percent done.
CCDC158
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.357336e-02	ci left: 5.670453e-01	ci right 5.865100e-01	k: 5768	n:10000
Cons ci ratio: 3.375935e-02	ci left: 5.643380e-01	ci right 5.838188e-01	k: 5741	n:10000
KS ci ratio: 6.677346e-02	ci left: 2.476661e-01	ci right 2.648761e-01	k: 2562	n:10000
CCDC158   10000 perm   2 sec   (4454 perm/sec)   p_kst 2.562000e-01   p_cons 5.741000e-01   p_joint 5.768000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC158.5_3434_10000_0.2562_0.5741_0.5768.png
                gene_name: CCDC158
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 26 percent done.
CCDC18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.939737e-02	ci left: 2.942987e-01	ci right 3.124160e-01	k: 3033	n:10000
Cons ci ratio: 8.332662e-02	ci left: 1.735958e-01	ci right 1.887903e-01	k: 1811	n:10000
KS ci ratio: 5.154889e-02	ci left: 3.568471e-01	ci right 3.758308e-01	k: 3663	n:10000
CCDC18   10000 perm   2 sec   (4276 perm/sec)   p_kst 3.663000e-01   p_cons 1.811000e-01   p_joint 3.033000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC18.5_4366_10000_0.3663_0.1811_0.3033.png
                gene_name: CCDC18
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 28 percent done.
CCDC27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.743651e-02	ci left: 1.324713e-01	ci right 1.461396e-01	k: 1392	n:10000
Cons ci ratio: 2.723101e-01	ci left: 1.753307e-02	ci right 2.315124e-02	k: 202	n:10000
KS ci ratio: 2.893336e-02	ci left: 6.378433e-01	ci right 6.566709e-01	k: 6473	n:10000
CCDC27   10000 perm   2 sec   (4913 perm/sec)   p_kst 6.473000e-01   p_cons 2.020000e-02   p_joint 1.392000e-01

Joint ci ratio: 8.253650e-02	ci left: 9.715154e-02	ci right 1.055648e-01	k: 2026	n:20000
Cons ci ratio: 1.927994e-01	ci left: 1.829524e-02	ci right 2.224596e-02	k: 404	n:20000
KS ci ratio: 2.054056e-02	ci left: 6.388246e-01	ci right 6.521331e-01	k: 12910	n:20000
CCDC27   20000 perm   4 sec   (4447 perm/sec)   p_kst 6.455000e-01   p_cons 2.020000e-02   p_joint 1.013000e-01

Joint ci ratio: 7.652319e-02	ci left: 7.734716e-02	ci right 8.353438e-02	k: 2412	n:30000
Cons ci ratio: 1.544004e-01	ci left: 1.940733e-02	ci right 2.268634e-02	k: 630	n:30000
KS ci ratio: 1.592020e-02	ci left: 6.636088e-01	ci right 6.742918e-01	k: 20069	n:30000
CCDC27   30000 perm   7 sec   (4261 perm/sec)   p_kst 6.689667e-01   p_cons 2.100000e-02   p_joint 8.040000e-02

Joint ci ratio: 6.353323e-02	ci left: 8.413242e-02	ci right 8.967772e-02	k: 3475	n:40000
Cons ci ratio: 1.404580e-01	ci left: 1.775699e-02	ci right 2.046346e-02	k: 763	n:40000
KS ci ratio: 1.386111e-02	ci left: 6.619556e-01	ci right 6.712202e-01	k: 26664	n:40000
CCDC27   40000 perm   10 sec   (4156 perm/sec)   p_kst 6.666000e-01   p_cons 1.907500e-02   p_joint 8.687500e-02

Joint ci ratio: 5.962767e-02	ci left: 7.718277e-02	ci right 8.194618e-02	k: 3977	n:50000
Cons ci ratio: 1.202231e-01	ci left: 1.956696e-02	ci right 2.208911e-02	k: 1040	n:50000
KS ci ratio: 1.243519e-02	ci left: 6.611042e-01	ci right 6.693966e-01	k: 33263	n:50000
CCDC27   50000 perm   12 sec   (4060 perm/sec)   p_kst 6.652600e-01   p_cons 2.080000e-02   p_joint 7.954000e-02

Joint ci ratio: 4.692230e-02	ci left: 1.017497e-01	ci right 1.066553e-01	k: 6251	n:60000
Cons ci ratio: 1.090902e-01	ci left: 1.991625e-02	ci right 2.223040e-02	k: 1263	n:60000
KS ci ratio: 1.134054e-02	ci left: 6.619090e-01	ci right 6.694749e-01	k: 39942	n:60000
CCDC27   60000 perm   15 sec   (3975 perm/sec)   p_kst 6.657000e-01   p_cons 2.105000e-02   p_joint 1.041833e-01

Joint ci ratio: 4.448369e-02	ci left: 9.763149e-02	ci right 1.020875e-01	k: 6989	n:70000
Cons ci ratio: 1.019436e-01	ci left: 1.963017e-02	ci right 2.175268e-02	k: 1447	n:70000
KS ci ratio: 1.050236e-02	ci left: 6.620625e-01	ci right 6.690667e-01	k: 46590	n:70000
CCDC27   70000 perm   18 sec   (3901 perm/sec)   p_kst 6.655714e-01   p_cons 2.067143e-02   p_joint 9.984286e-02

Joint ci ratio: 4.565895e-02	ci left: 8.243305e-02	ci right 8.629715e-02	k: 6748	n:80000
Cons ci ratio: 9.506251e-02	ci left: 1.982222e-02	ci right 2.181275e-02	k: 1664	n:80000
KS ci ratio: 9.823988e-03	ci left: 6.622935e-01	ci right 6.688445e-01	k: 53246	n:80000
CCDC27   80000 perm   21 sec   (3834 perm/sec)   p_kst 6.655750e-01   p_cons 2.080000e-02   p_joint 8.435000e-02

Outputting figure to mutsig2_images.part000000000031/CCDC27.5_2019_80000_0.66558_0.0208_0.08435.png
                gene_name: CCDC27
               theta_stop: 0.095 
                    nperm: 80000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.021 
      ci_cons_bounds_left: 0.020 
     ci_cons_bounds_right: 0.022 
                  p_joint: 0.084 
     ci_joint_bounds_left: 0.082 
    ci_joint_bounds_right: 0.086 

Current progress: 30 percent done.
CCDC38
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.606649e-02	ci left: 4.102013e-01	ci right 4.296454e-01	k: 4199	n:10000
Cons ci ratio: 7.452654e-02	ci left: 2.085598e-01	ci right 2.248056e-01	k: 2166	n:10000
KS ci ratio: 3.350465e-02	ci left: 5.680480e-01	ci right 5.875066e-01	k: 5778	n:10000
CCDC38   10000 perm   2 sec   (5216 perm/sec)   p_kst 5.778000e-01   p_cons 2.166000e-01   p_joint 4.199000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC38.5_1752_10000_0.5778_0.2166_0.4199.png
                gene_name: CCDC38
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 33 percent done.
CCDC46
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.707555e-02	ci left: 1.975185e-01	ci right 2.134534e-01	k: 2054	n:10000
Cons ci ratio: 1.372648e-01	ci left: 7.020239e-02	ci right 8.064655e-02	k: 753	n:10000
KS ci ratio: 1.431370e-02	ci left: 8.759247e-01	ci right 8.886517e-01	k: 8824	n:10000
CCDC46   10000 perm   2 sec   (4803 perm/sec)   p_kst 8.824000e-01   p_cons 7.530000e-02   p_joint 2.054000e-01

Joint ci ratio: 5.505822e-02	ci left: 1.966028e-01	ci right 2.077840e-01	k: 4043	n:20000
Cons ci ratio: 1.005682e-01	ci left: 6.703871e-02	ci right 7.418673e-02	k: 1411	n:20000
KS ci ratio: 9.961120e-03	ci left: 8.811584e-01	ci right 8.900292e-01	k: 17713	n:20000
CCDC46   20000 perm   5 sec   (4125 perm/sec)   p_kst 8.856500e-01   p_cons 7.055000e-02   p_joint 2.021500e-01

Joint ci ratio: 4.457311e-02	ci left: 2.003777e-01	ci right 2.095461e-01	k: 6148	n:30000
Cons ci ratio: 8.244977e-02	ci left: 6.717056e-02	ci right 7.297970e-02	k: 2101	n:30000
KS ci ratio: 8.237585e-03	ci left: 8.793428e-01	ci right 8.866495e-01	k: 26491	n:30000
CCDC46   30000 perm   8 sec   (3949 perm/sec)   p_kst 8.830333e-01   p_cons 7.003333e-02   p_joint 2.049333e-01

Outputting figure to mutsig2_images.part000000000031/CCDC46.5_3138_30000_0.88303_0.070033_0.20493.png
                gene_name: CCDC46
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.070 
      ci_cons_bounds_left: 0.067 
     ci_cons_bounds_right: 0.073 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 35 percent done.
CCDC63
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.891299e-02	ci left: 4.937506e-01	ci right 5.134473e-01	k: 5036	n:10000
Cons ci ratio: 2.115807e-02	ci left: 7.660785e-01	ci right 7.825614e-01	k: 7744	n:10000
KS ci ratio: 6.805859e-02	ci left: 2.405485e-01	ci right 2.575979e-01	k: 2490	n:10000
CCDC63   10000 perm   2 sec   (5382 perm/sec)   p_kst 2.490000e-01   p_cons 7.744000e-01   p_joint 5.036000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC63.5_1736_10000_0.249_0.7744_0.5036.png
                gene_name: CCDC63
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 37 percent done.
CCDC121
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.925331e-01	ci left: 3.595770e-02	ci right 4.371330e-02	k: 397	n:10000
Cons ci ratio: 3.389164e-01	ci left: 1.096414e-02	ci right 1.552595e-02	k: 131	n:10000
KS ci ratio: 6.825929e-02	ci left: 2.394614e-01	ci right 2.564857e-01	k: 2479	n:10000
CCDC121   10000 perm   2 sec   (5729 perm/sec)   p_kst 2.479000e-01   p_cons 1.310000e-02   p_joint 3.970000e-02

Joint ci ratio: 1.475196e-01	ci left: 3.157949e-02	ci right 3.665714e-02	k: 681	n:20000
Cons ci ratio: 2.478726e-01	ci left: 1.081866e-02	ci right 1.392552e-02	k: 246	n:20000
KS ci ratio: 4.888966e-02	ci left: 2.372669e-01	ci right 2.492078e-01	k: 4864	n:20000
CCDC121   20000 perm   4 sec   (5061 perm/sec)   p_kst 2.432000e-01   p_cons 1.230000e-02   p_joint 3.405000e-02

Joint ci ratio: 1.413354e-01	ci left: 2.323058e-02	ci right 2.679555e-02	k: 749	n:30000
Cons ci ratio: 2.068140e-01	ci left: 1.060884e-02	ci right 1.308704e-02	k: 354	n:30000
KS ci ratio: 3.984080e-02	ci left: 2.390820e-01	ci right 2.488343e-01	k: 7318	n:30000
CCDC121   30000 perm   6 sec   (4689 perm/sec)   p_kst 2.439333e-01   p_cons 1.180000e-02   p_joint 2.496667e-02

Joint ci ratio: 1.512035e-01	ci left: 1.527431e-02	ci right 1.779658e-02	k: 660	n:40000
Cons ci ratio: 1.813164e-01	ci left: 1.050210e-02	ci right 1.261970e-02	k: 461	n:40000
KS ci ratio: 3.454925e-02	ci left: 2.392505e-01	ci right 2.476868e-01	k: 9738	n:40000
CCDC121   40000 perm   9 sec   (4547 perm/sec)   p_kst 2.434500e-01   p_cons 1.152500e-02   p_joint 1.650000e-02

Joint ci ratio: 1.152345e-01	ci left: 2.131504e-02	ci right 2.394078e-02	k: 1130	n:50000
Cons ci ratio: 1.551880e-01	ci left: 1.162147e-02	ci right 1.359572e-02	k: 629	n:50000
KS ci ratio: 3.095349e-02	ci left: 2.390865e-01	ci right 2.466234e-01	k: 12142	n:50000
CCDC121   50000 perm   11 sec   (4419 perm/sec)   p_kst 2.428400e-01   p_cons 1.258000e-02   p_joint 2.260000e-02

Joint ci ratio: 1.049257e-01	ci left: 2.153924e-02	ci right 2.394056e-02	k: 1363	n:60000
Cons ci ratio: 1.423357e-01	ci left: 1.159416e-02	ci right 1.338679e-02	k: 748	n:60000
KS ci ratio: 2.823557e-02	ci left: 2.396884e-01	ci right 2.465697e-01	k: 14587	n:60000
CCDC121   60000 perm   14 sec   (4337 perm/sec)   p_kst 2.431167e-01   p_cons 1.246667e-02   p_joint 2.271667e-02

Joint ci ratio: 1.033368e-01	ci left: 1.910098e-02	ci right 2.119621e-02	k: 1409	n:70000
Cons ci ratio: 1.328463e-01	ci left: 1.146897e-02	ci right 1.311468e-02	k: 859	n:70000
KS ci ratio: 2.617189e-02	ci left: 2.395134e-01	ci right 2.458793e-01	k: 16988	n:70000
CCDC121   70000 perm   16 sec   (4248 perm/sec)   p_kst 2.426857e-01   p_cons 1.227143e-02   p_joint 2.012857e-02

Joint ci ratio: 1.033949e-01	ci left: 1.673664e-02	ci right 1.857358e-02	k: 1411	n:80000
Cons ci ratio: 1.238751e-01	ci left: 1.159616e-02	ci right 1.313950e-02	k: 988	n:80000
KS ci ratio: 2.452911e-02	ci left: 2.390104e-01	ci right 2.449583e-01	k: 19358	n:80000
CCDC121   80000 perm   19 sec   (4180 perm/sec)   p_kst 2.419750e-01   p_cons 1.235000e-02   p_joint 1.763750e-02

Joint ci ratio: 8.880918e-02	ci left: 2.024705e-02	ci right 2.213954e-02	k: 1906	n:90000
Cons ci ratio: 1.166117e-01	ci left: 1.167642e-02	ci right 1.313304e-02	k: 1115	n:90000
KS ci ratio: 2.313249e-02	ci left: 2.390829e-01	ci right 2.446893e-01	k: 21769	n:90000
CCDC121   90000 perm   22 sec   (4118 perm/sec)   p_kst 2.418778e-01   p_cons 1.238889e-02   p_joint 2.117778e-02

Joint ci ratio: 7.514728e-02	ci left: 2.549362e-02	ci right 2.749397e-02	k: 2648	n:100000
Cons ci ratio: 1.113574e-01	ci left: 1.155795e-02	ci right 1.293056e-02	k: 1223	n:100000
KS ci ratio: 2.195612e-02	ci left: 2.390491e-01	ci right 2.443659e-01	k: 24170	n:100000
CCDC121   100000 perm   25 sec   (4033 perm/sec)   p_kst 2.417000e-01   p_cons 1.223000e-02   p_joint 2.648000e-02

Joint ci ratio: 6.855710e-02	ci left: 2.787320e-02	ci right 2.986084e-02	k: 3174	n:110000
Cons ci ratio: 1.065523e-01	ci left: 1.150650e-02	ci right 1.281032e-02	k: 1336	n:110000
KS ci ratio: 2.098279e-02	ci left: 2.383299e-01	ci right 2.433928e-01	k: 26494	n:110000
CCDC121   110000 perm   28 sec   (3962 perm/sec)   p_kst 2.408545e-01   p_cons 1.214545e-02   p_joint 2.885455e-02

Joint ci ratio: 6.927204e-02	ci left: 2.509054e-02	ci right 2.689913e-02	k: 3118	n:120000
Cons ci ratio: 1.015082e-01	ci left: 1.165152e-02	ci right 1.290555e-02	k: 1472	n:120000
KS ci ratio: 2.007378e-02	ci left: 2.387235e-01	ci right 2.435724e-01	k: 28937	n:120000
CCDC121   120000 perm   31 sec   (3893 perm/sec)   p_kst 2.411417e-01   p_cons 1.226667e-02   p_joint 2.598333e-02

Joint ci ratio: 9.159837e-02	ci left: 1.325556e-02	ci right 1.453549e-02	k: 1805	n:130000
Cons ci ratio: 9.717969e-02	ci left: 1.176044e-02	ci right 1.296915e-02	k: 1606	n:130000
KS ci ratio: 1.883105e-02	ci left: 2.476402e-01	ci right 2.523555e-01	k: 32499	n:130000
CCDC121   130000 perm   34 sec   (3822 perm/sec)   p_kst 2.499923e-01   p_cons 1.235385e-02   p_joint 1.388462e-02

Outputting figure to mutsig2_images.part000000000031/CCDC121.4_1331_130000_0.24999_0.012354_0.013885.png
                gene_name: CCDC121
               theta_stop: 0.097 
                    nperm: 130000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.012 
      ci_cons_bounds_left: 0.012 
     ci_cons_bounds_right: 0.013 
                  p_joint: 0.014 
     ci_joint_bounds_left: 0.013 
    ci_joint_bounds_right: 0.015 

Current progress: 39 percent done.
CCDC135
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.021289e-03	ci left: 9.654135e-01	ci right 9.723098e-01	k: 9690	n:10000
KS ci ratio: 2.017470e-02	ci left: 7.824912e-01	ci right 7.985392e-01	k: 7906	n:10000
CCDC135   10000 perm   2 sec   (5060 perm/sec)   p_kst 7.906000e-01   p_cons 9.690000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000031/CCDC135.4_2693_10000_0.7906_0.969_1.png
                gene_name: CCDC135
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 41 percent done.
CCDC14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.472414e-02	ci left: 8.697895e-01	ci right 8.827904e-01	k: 8764	n:10000
Cons ci ratio: 2.531941e-02	ci left: 6.965581e-01	ci right 7.145221e-01	k: 7056	n:10000
KS ci ratio: 2.516108e-02	ci left: 6.991805e-01	ci right 7.170981e-01	k: 7082	n:10000
CCDC14   10000 perm   2 sec   (5313 perm/sec)   p_kst 7.082000e-01   p_cons 7.056000e-01   p_joint 8.764000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC14.4_2787_10000_0.7082_0.7056_0.8764.png
                gene_name: CCDC14
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 43 percent done.
CCDC19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.649454e-02	ci left: 4.057173e-01	ci right 4.251320e-01	k: 4154	n:10000
Cons ci ratio: 4.025071e-02	ci left: 4.768587e-01	ci right 4.965490e-01	k: 4867	n:10000
KS ci ratio: 6.099475e-02	ci left: 2.832982e-01	ci right 3.012230e-01	k: 2922	n:10000
CCDC19   10000 perm   2 sec   (5894 perm/sec)   p_kst 2.922000e-01   p_cons 4.867000e-01   p_joint 4.154000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC19.4_1704_10000_0.2922_0.4867_0.4154.png
                gene_name: CCDC19
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 46 percent done.
CCDC52
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.938381e-02	ci left: 1.540423e-01	ci right 1.685555e-01	k: 1612	n:10000
Cons ci ratio: 2.108706e-01	ci left: 2.986994e-02	ci right 3.700523e-02	k: 333	n:10000
KS ci ratio: 9.830757e-03	ci left: 9.360983e-01	ci right 9.454429e-01	k: 9409	n:10000
CCDC52   10000 perm   2 sec   (4528 perm/sec)   p_kst 9.409000e-01   p_cons 3.330000e-02   p_joint 1.612000e-01

Joint ci ratio: 6.319319e-02	ci left: 1.562270e-01	ci right 1.664716e-01	k: 3226	n:20000
Cons ci ratio: 1.400379e-01	ci left: 3.505436e-02	ci right 4.038113e-02	k: 753	n:20000
KS ci ratio: 6.889657e-03	ci left: 9.385168e-01	ci right 9.450540e-01	k: 18837	n:20000
CCDC52   20000 perm   5 sec   (4240 perm/sec)   p_kst 9.418500e-01   p_cons 3.765000e-02   p_joint 1.613000e-01

Joint ci ratio: 4.232285e-02	ci left: 2.176384e-01	ci right 2.270821e-01	k: 6670	n:30000
Cons ci ratio: 1.133043e-01	ci left: 3.618883e-02	ci right 4.056781e-02	k: 1150	n:30000
KS ci ratio: 5.739351e-03	ci left: 9.368448e-01	ci right 9.422697e-01	k: 28188	n:30000
CCDC52   30000 perm   7 sec   (4048 perm/sec)   p_kst 9.396000e-01   p_cons 3.833333e-02   p_joint 2.223333e-01

Joint ci ratio: 3.818213e-02	ci left: 2.045525e-01	ci right 2.125398e-01	k: 8341	n:40000
Cons ci ratio: 9.912541e-02	ci left: 3.575694e-02	ci right 3.951056e-02	k: 1504	n:40000
KS ci ratio: 5.012705e-03	ci left: 9.362284e-01	ci right 9.409577e-01	k: 37545	n:40000
CCDC52   40000 perm   10 sec   (3954 perm/sec)   p_kst 9.386250e-01   p_cons 3.760000e-02   p_joint 2.085250e-01

Outputting figure to mutsig2_images.part000000000031/CCDC52.4_2636_40000_0.93863_0.0376_0.20852.png
                gene_name: CCDC52
               theta_stop: 0.099 
                    nperm: 40000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.038 
      ci_cons_bounds_left: 0.036 
     ci_cons_bounds_right: 0.040 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 48 percent done.
CCDC57
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside exons of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.522196e-02	ci left: 6.981718e-01	ci right 7.161074e-01	k: 7072	n:10000
Cons ci ratio: 4.071259e-02	ci left: 4.711640e-01	ci right 4.908471e-01	k: 4810	n:10000
KS ci ratio: 3.752878e-02	ci left: 5.118543e-01	ci right 5.315331e-01	k: 5217	n:10000
CCDC57   10000 perm   2 sec   (5140 perm/sec)   p_kst 5.217000e-01   p_cons 4.810000e-01   p_joint 7.072000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC57.3_2812_10000_0.5217_0.481_0.7072.png
                gene_name: CCDC57
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 50 percent done.
CCDC60
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.765211e-02	ci left: 6.583700e-01	ci right 6.769322e-01	k: 6677	n:10000
Cons ci ratio: 1.544229e-02	ci left: 8.588605e-01	ci right 8.723258e-01	k: 8657	n:10000
KS ci ratio: 4.718083e-02	ci left: 3.986443e-01	ci right 4.180092e-01	k: 4083	n:10000
CCDC60   10000 perm   2 sec   (5389 perm/sec)   p_kst 4.083000e-01   p_cons 8.657000e-01   p_joint 6.677000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC60.4_1709_10000_0.4083_0.8657_0.6677.png
                gene_name: CCDC60
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 52 percent done.
CCDC109A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.644065e-03	ci left: 9.382754e-01	ci right 9.474645e-01	k: 9430	n:10000
Cons ci ratio: 4.351411e-02	ci left: 4.381199e-01	ci right 4.577105e-01	k: 4479	n:10000
KS ci ratio: 2.623654e-02	ci left: 6.814356e-01	ci right 6.996533e-01	k: 6906	n:10000
CCDC109A   10000 perm   2 sec   (5787 perm/sec)   p_kst 6.906000e-01   p_cons 4.479000e-01   p_joint 9.430000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC109A.3_1088_10000_0.6906_0.4479_0.943.png
                gene_name: CCDC109A
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 54 percent done.
CCDC111
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.604030e-02	ci left: 6.846608e-01	ci right 7.028262e-01	k: 6938	n:10000
KS ci ratio: 2.213698e-02	ci left: 7.496835e-01	ci right 7.665659e-01	k: 7582	n:10000
CCDC111   10000 perm   2 sec   (5716 perm/sec)   p_kst 7.582000e-01   p_cons 6.938000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000031/CCDC111.3_1731_10000_0.7582_0.6938_1.png
                gene_name: CCDC111
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 57 percent done.
CCDC125
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.444083e-02	ci left: 4.277464e-01	ci right 4.472900e-01	k: 4375	n:10000
Cons ci ratio: 5.159332e-02	ci left: 3.564494e-01	ci right 3.754288e-01	k: 3659	n:10000
KS ci ratio: 5.588080e-02	ci left: 3.204868e-01	ci right 3.390125e-01	k: 3297	n:10000
CCDC125   10000 perm   2 sec   (5940 perm/sec)   p_kst 3.297000e-01   p_cons 3.659000e-01   p_joint 4.375000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC125.3_1580_10000_0.3297_0.3659_0.4375.png
                gene_name: CCDC125
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 59 percent done.
CCDC136
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.350308e-02	ci left: 3.398515e-01	ci right 3.586364e-01	k: 3492	n:10000
Cons ci ratio: 5.000832e-02	ci left: 3.709701e-01	ci right 3.900995e-01	k: 3805	n:10000
KS ci ratio: 7.192613e-02	ci left: 2.206956e-01	ci right 2.372626e-01	k: 2289	n:10000
CCDC136   10000 perm   2 sec   (4940 perm/sec)   p_kst 2.289000e-01   p_cons 3.805000e-01   p_joint 3.492000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC136.3_3533_10000_0.2289_0.3805_0.3492.png
                gene_name: CCDC136
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 61 percent done.
CCDC148
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.888568e-01	ci left: 3.738868e-02	ci right 4.528136e-02	k: 412	n:10000
Cons ci ratio: 1.950999e-01	ci left: 3.500453e-02	ci right 4.266711e-02	k: 387	n:10000
KS ci ratio: 7.557379e-02	ci left: 2.039253e-01	ci right 2.200428e-01	k: 2119	n:10000
CCDC148   10000 perm   2 sec   (5665 perm/sec)   p_kst 2.119000e-01   p_cons 3.870000e-02   p_joint 4.120000e-02

Joint ci ratio: 1.460843e-01	ci left: 3.220637e-02	ci right 3.733005e-02	k: 694	n:20000
Cons ci ratio: 1.381450e-01	ci left: 3.602079e-02	ci right 4.141438e-02	k: 773	n:20000
KS ci ratio: 5.353551e-02	ci left: 2.057091e-01	ci right 2.170749e-01	k: 4227	n:20000
CCDC148   20000 perm   4 sec   (4959 perm/sec)   p_kst 2.113500e-01   p_cons 3.865000e-02   p_joint 3.470000e-02

Joint ci ratio: 1.162782e-01	ci left: 3.437385e-02	ci right 3.864985e-02	k: 1094	n:30000
Cons ci ratio: 1.190124e-01	ci left: 3.281934e-02	ci right 3.700469e-02	k: 1046	n:30000
KS ci ratio: 4.398892e-02	ci left: 2.046752e-01	ci right 2.139145e-01	k: 6278	n:30000
CCDC148   30000 perm   6 sec   (4706 perm/sec)   p_kst 2.092667e-01   p_cons 3.486667e-02   p_joint 3.646667e-02

Joint ci ratio: 1.168828e-01	ci left: 2.574923e-02	ci right 2.896987e-02	k: 1093	n:40000
Cons ci ratio: 1.034914e-01	ci left: 3.283029e-02	ci right 3.643768e-02	k: 1384	n:40000
KS ci ratio: 3.820817e-02	ci left: 2.043291e-01	ci right 2.123132e-01	k: 8332	n:40000
CCDC148   40000 perm   9 sec   (4542 perm/sec)   p_kst 2.083000e-01   p_cons 3.460000e-02   p_joint 2.732500e-02

Joint ci ratio: 8.165639e-02	ci left: 4.225803e-02	ci right 4.587514e-02	k: 2202	n:50000
Cons ci ratio: 9.307509e-02	ci left: 3.266317e-02	ci right 3.587119e-02	k: 1712	n:50000
KS ci ratio: 3.410469e-02	ci left: 2.054232e-01	ci right 2.125706e-01	k: 10449	n:50000
CCDC148   50000 perm   11 sec   (4397 perm/sec)   p_kst 2.089800e-01   p_cons 3.424000e-02   p_joint 4.404000e-02

Outputting figure to mutsig2_images.part000000000031/CCDC148.3_1884_50000_0.20898_0.03424_0.04404.png
                gene_name: CCDC148
               theta_stop: 0.093 
                    nperm: 50000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.034 
      ci_cons_bounds_left: 0.033 
     ci_cons_bounds_right: 0.036 
                  p_joint: 0.044 
     ci_joint_bounds_left: 0.042 
    ci_joint_bounds_right: 0.046 

Current progress: 63 percent done.
CCDC151
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.539580e-02	ci left: 8.595750e-01	ci right 8.730108e-01	k: 8664	n:10000
Cons ci ratio: 2.558164e-02	ci left: 6.922218e-01	ci right 7.102608e-01	k: 7013	n:10000
KS ci ratio: 2.685211e-02	ci left: 6.713602e-01	ci right 6.897345e-01	k: 6806	n:10000
CCDC151   10000 perm   2 sec   (5910 perm/sec)   p_kst 6.806000e-01   p_cons 7.013000e-01   p_joint 8.664000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC151.3_1840_10000_0.6806_0.7013_0.8664.png
                gene_name: CCDC151
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 65 percent done.
CCDC155
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.569972e-02	ci left: 4.140880e-01	ci right 4.335564e-01	k: 4238	n:10000
Cons ci ratio: 3.550329e-02	ci left: 5.394848e-01	ci right 5.590865e-01	k: 5493	n:10000
KS ci ratio: 5.885386e-02	ci left: 2.981652e-01	ci right 3.163472e-01	k: 3072	n:10000
CCDC155   10000 perm   2 sec   (5823 perm/sec)   p_kst 3.072000e-01   p_cons 5.493000e-01   p_joint 4.238000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC155.3_1765_10000_0.3072_0.5493_0.4238.png
                gene_name: CCDC155
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 67 percent done.
CCDC40
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.851014e-02	ci left: 8.099906e-01	ci right 8.252239e-01	k: 8177	n:10000
KS ci ratio: 1.192926e-02	ci left: 9.096710e-01	ci right 9.206857e-01	k: 9153	n:10000
CCDC40   10000 perm   2 sec   (4998 perm/sec)   p_kst 9.153000e-01   p_cons 8.177000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000031/CCDC40.3_3509_10000_0.9153_0.8177_1.png
                gene_name: CCDC40
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
CCDC41
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.520978e-02	ci left: 6.983735e-01	ci right 7.163055e-01	k: 7074	n:10000
Cons ci ratio: 5.958053e-02	ci left: 2.930100e-01	ci right 3.111054e-01	k: 3020	n:10000
KS ci ratio: 1.168940e-02	ci left: 9.128618e-01	ci right 9.236931e-01	k: 9184	n:10000
CCDC41   10000 perm   2 sec   (5710 perm/sec)   p_kst 9.184000e-01   p_cons 3.020000e-01   p_joint 7.074000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC41.3_2166_10000_0.9184_0.302_0.7074.png
                gene_name: CCDC41
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 72 percent done.
CCDC47
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.167123e-02	ci left: 3.557534e-01	ci right 3.747251e-01	k: 3652	n:10000
KS ci ratio: 1.357268e-02	ci left: 8.867766e-01	ci right 8.989934e-01	k: 8930	n:10000
CCDC47   10000 perm   2 sec   (5644 perm/sec)   p_kst 8.930000e-01   p_cons 3.652000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000031/CCDC47.3_1500_10000_0.893_0.3652_1.png
                gene_name: CCDC47
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.37 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 74 percent done.
CCDC51
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.655002e-02	ci left: 6.762965e-01	ci right 6.945953e-01	k: 6855	n:10000
KS ci ratio: 2.130935e-02	ci left: 7.635473e-01	ci right 7.800941e-01	k: 7719	n:10000
CCDC51   10000 perm   2 sec   (6301 perm/sec)   p_kst 7.719000e-01   p_cons 6.855000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000031/CCDC51.3_1248_10000_0.7719_0.6855_1.png
                gene_name: CCDC51
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
CCDC11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.462305e-02	ci left: 5.519083e-01	ci right 5.714558e-01	k: 5617	n:10000
KS ci ratio: 5.094380e-02	ci left: 3.623163e-01	ci right 3.813585e-01	k: 3718	n:10000
CCDC11   10000 perm   2 sec   (6183 perm/sec)   p_kst 3.718000e-01   p_cons 5.617000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000031/CCDC11.2_1577_10000_0.3718_0.5617_1.png
                gene_name: CCDC11
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
CCDC113
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.878267e-02	ci left: 8.055218e-01	ci right 8.208953e-01	k: 8133	n:10000
Cons ci ratio: 2.138192e-02	ci left: 7.623325e-01	ci right 7.789096e-01	k: 7707	n:10000
KS ci ratio: 4.020242e-02	ci left: 4.774582e-01	ci right 4.971492e-01	k: 4873	n:10000
CCDC113   10000 perm   2 sec   (6538 perm/sec)   p_kst 4.873000e-01   p_cons 7.707000e-01   p_joint 8.133000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC113.2_1170_10000_0.4873_0.7707_0.8133.png
                gene_name: CCDC113
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 80 percent done.
CCDC115
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.061926e-03	ci left: 9.554502e-01	ci right 9.632793e-01	k: 9595	n:10000
KS ci ratio: 3.571888e-02	ci left: 5.364800e-01	ci right 5.560930e-01	k: 5463	n:10000
CCDC115   10000 perm   1 sec   (6878 perm/sec)   p_kst 5.463000e-01   p_cons 9.595000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000031/CCDC115.2_563_10000_0.5463_0.9595_1.png
                gene_name: CCDC115
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
CCDC13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.126343e-02	ci left: 9.184254e-01	ci right 9.289262e-01	k: 9238	n:10000
KS ci ratio: 9.653018e-03	ci left: 9.381717e-01	ci right 9.473683e-01	k: 9429	n:10000
CCDC13   10000 perm   2 sec   (5501 perm/sec)   p_kst 9.429000e-01   p_cons 9.238000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000031/CCDC13.2_2208_10000_0.9429_0.9238_1.png
                gene_name: CCDC13
               theta_stop: 0.011 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 85 percent done.
CCDC137
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.605256e-02	ci left: 6.844592e-01	ci right 7.026280e-01	k: 6936	n:10000
KS ci ratio: 1.986977e-02	ci left: 7.875606e-01	ci right 8.034668e-01	k: 7956	n:10000
CCDC137   10000 perm   2 sec   (6353 perm/sec)   p_kst 7.956000e-01   p_cons 6.936000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000031/CCDC137.2_894_10000_0.7956_0.6936_1.png
                gene_name: CCDC137
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
CCDC138
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.135385e-02	ci left: 6.001585e-01	ci right 6.193775e-01	k: 6098	n:10000
Cons ci ratio: 4.493169e-02	ci left: 4.223619e-01	ci right 4.418776e-01	k: 4321	n:10000
KS ci ratio: 4.691824e-02	ci left: 4.013338e-01	ci right 4.207181e-01	k: 4110	n:10000
CCDC138   10000 perm   2 sec   (5603 perm/sec)   p_kst 4.110000e-01   p_cons 4.321000e-01   p_joint 6.098000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC138.2_2058_10000_0.411_0.4321_0.6098.png
                gene_name: CCDC138
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 89 percent done.
CCDC22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.291787e-02	ci left: 2.159584e-01	ci right 2.324025e-01	k: 2241	n:10000
Cons ci ratio: 1.226322e-01	ci left: 8.698787e-02	ci right 9.845066e-02	k: 926	n:10000
KS ci ratio: 5.959467e-02	ci left: 2.929109e-01	ci right 3.110046e-01	k: 3019	n:10000
CCDC22   10000 perm   2 sec   (5814 perm/sec)   p_kst 3.019000e-01   p_cons 9.260000e-02   p_joint 2.241000e-01

Joint ci ratio: 6.147986e-03	ci left: 9.501298e-01	ci right 9.560376e-01	k: 19063	n:20000
Cons ci ratio: 8.620424e-02	ci left: 8.964657e-02	ci right 9.777200e-02	k: 1873	n:20000
KS ci ratio: 4.235077e-02	ci left: 2.935044e-01	ci right 3.062539e-01	k: 5997	n:20000
CCDC22   20000 perm   4 sec   (5048 perm/sec)   p_kst 2.998500e-01   p_cons 9.365000e-02   p_joint 9.531500e-01

Outputting figure to mutsig2_images.part000000000031/CCDC22.2_1952_20000_0.29985_0.09365_0.95315.png
                gene_name: CCDC22
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.094 
      ci_cons_bounds_left: 0.090 
     ci_cons_bounds_right: 0.098 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 91 percent done.
CCDC28A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.421137e-01	ci left: 6.565505e-02	ci right 7.579675e-02	k: 706	n:10000
Cons ci ratio: 7.032931e-03	ci left: 9.653082e-01	ci right 9.722151e-01	k: 9689	n:10000
KS ci ratio: 3.176417e-01	ci left: 1.261754e-02	ci right 1.747097e-02	k: 149	n:10000
CCDC28A   10000 perm   1 sec   (6938 perm/sec)   p_kst 1.490000e-02   p_cons 9.689000e-01   p_joint 7.060000e-02

Joint ci ratio: 7.186426e-02	ci left: 1.248267e-01	ci right 1.341813e-01	k: 2589	n:20000
Cons ci ratio: 4.514749e-03	ci left: 9.719077e-01	ci right 9.763530e-01	k: 19484	n:20000
KS ci ratio: 2.257608e-01	ci left: 1.317232e-02	ci right 1.657086e-02	k: 296	n:20000
CCDC28A   20000 perm   3 sec   (5962 perm/sec)   p_kst 1.480000e-02   p_cons 9.742000e-01   p_joint 1.294500e-01

Joint ci ratio: 5.454658e-02	ci left: 1.428459e-01	ci right 1.508893e-01	k: 4405	n:30000
Cons ci ratio: 3.728911e-03	ci left: 9.717226e-01	ci right 9.753849e-01	k: 29208	n:30000
KS ci ratio: 1.887932e-01	ci left: 1.282815e-02	ci right 1.553381e-02	k: 424	n:30000
CCDC28A   30000 perm   5 sec   (5629 perm/sec)   p_kst 1.413333e-02   p_cons 9.736000e-01   p_joint 1.468333e-01

Joint ci ratio: 5.077112e-02	ci left: 1.263973e-01	ci right 1.330066e-01	k: 5187	n:40000
Cons ci ratio: 3.235146e-03	ci left: 9.718787e-01	ci right 9.750521e-01	k: 38940	n:40000
KS ci ratio: 1.649332e-01	ci left: 1.277557e-02	ci right 1.509579e-02	k: 556	n:40000
CCDC28A   40000 perm   7 sec   (5427 perm/sec)   p_kst 1.390000e-02   p_cons 9.735000e-01   p_joint 1.296750e-01

Joint ci ratio: 2.911509e-02	ci left: 2.621904e-01	ci right 2.699568e-01	k: 13303	n:50000
Cons ci ratio: 2.903430e-03	ci left: 9.718697e-01	ci right 9.747150e-01	k: 48666	n:50000
KS ci ratio: 1.473335e-01	ci left: 1.293064e-02	ci right 1.500635e-02	k: 697	n:50000
CCDC28A   50000 perm   9 sec   (5272 perm/sec)   p_kst 1.394000e-02   p_cons 9.733200e-01   p_joint 2.660600e-01

Joint ci ratio: 1.961027e-02	ci left: 3.958104e-01	ci right 4.036659e-01	k: 23984	n:60000
Cons ci ratio: 2.631721e-03	ci left: 9.723710e-01	ci right 9.749496e-01	k: 58421	n:60000
KS ci ratio: 1.345455e-01	ci left: 1.301067e-02	ci right 1.490344e-02	k: 836	n:60000
CCDC28A   60000 perm   12 sec   (5131 perm/sec)   p_kst 1.393333e-02   p_cons 9.736833e-01   p_joint 3.997333e-01

Joint ci ratio: 1.926893e-02	ci left: 3.679614e-01	ci right 3.751349e-01	k: 26008	n:70000
Cons ci ratio: 2.449156e-03	ci left: 9.721956e-01	ci right 9.745935e-01	k: 68139	n:70000
KS ci ratio: 1.248572e-01	ci left: 1.301806e-02	ci right 1.476543e-02	k: 971	n:70000
CCDC28A   70000 perm   14 sec   (5006 perm/sec)   p_kst 1.387143e-02   p_cons 9.734143e-01   p_joint 3.715429e-01

Joint ci ratio: 3.566613e-02	ci left: 1.288428e-01	ci right 1.335340e-01	k: 10494	n:80000
Cons ci ratio: 2.273785e-03	ci left: 9.726696e-01	ci right 9.748959e-01	k: 77904	n:80000
KS ci ratio: 1.162037e-01	ci left: 1.320940e-02	ci right 1.485112e-02	k: 1121	n:80000
CCDC28A   80000 perm   16 sec   (4887 perm/sec)   p_kst 1.401250e-02   p_cons 9.738000e-01   p_joint 1.311750e-01

Joint ci ratio: 3.357708e-02	ci left: 1.293095e-01	ci right 1.337365e-01	k: 11836	n:90000
Cons ci ratio: 2.145094e-03	ci left: 9.727015e-01	ci right 9.748011e-01	k: 87639	n:90000
KS ci ratio: 1.091748e-01	ci left: 1.335066e-02	ci right 1.490311e-02	k: 1270	n:90000
CCDC28A   90000 perm   19 sec   (4769 perm/sec)   p_kst 1.411111e-02   p_cons 9.737667e-01   p_joint 1.315111e-01

Joint ci ratio: 3.239392e-02	ci left: 1.256571e-01	ci right 1.298045e-01	k: 12772	n:100000
Cons ci ratio: 2.027665e-03	ci left: 9.729439e-01	ci right 9.749285e-01	k: 97395	n:100000
KS ci ratio: 1.033212e-01	ci left: 1.345632e-02	ci right 1.493206e-02	k: 1418	n:100000
CCDC28A   100000 perm   21 sec   (4651 perm/sec)   p_kst 1.418000e-02   p_cons 9.739500e-01   p_joint 1.277200e-01

Joint ci ratio: 3.090696e-02	ci left: 1.256065e-01	ci right 1.295586e-01	k: 14033	n:110000
Cons ci ratio: 1.945185e-03	ci left: 9.726725e-01	ci right 9.745752e-01	k: 107100	n:110000
KS ci ratio: 9.825464e-02	ci left: 1.356232e-02	ci right 1.497255e-02	k: 1568	n:110000
CCDC28A   110000 perm   24 sec   (4559 perm/sec)   p_kst 1.425455e-02   p_cons 9.736364e-01   p_joint 1.275727e-01

Outputting figure to mutsig2_images.part000000000031/CCDC28A.2_849_110000_0.014255_0.97364_0.12757.png
                gene_name: CCDC28A
               theta_stop: 0.098 
                    nperm: 110000 
                     p_ks: 0.014 
        ci_ks_bounds_left: 0.014 
       ci_ks_bounds_right: 0.015 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 93 percent done.
CCDC55
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.526634e-02	ci left: 2.563695e-01	ci right 2.737676e-01	k: 2650	n:10000
Cons ci ratio: 8.717051e-02	ci left: 1.608181e-01	ci right 1.755758e-01	k: 1681	n:10000
KS ci ratio: 5.547877e-02	ci left: 3.236634e-01	ci right 3.422340e-01	k: 3329	n:10000
CCDC55   10000 perm   2 sec   (5844 perm/sec)   p_kst 3.329000e-01   p_cons 1.681000e-01   p_joint 2.650000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC55.2_1705_10000_0.3329_0.1681_0.265.png
                gene_name: CCDC55
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 96 percent done.
CCDC6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.992190e-02	ci left: 4.809557e-01	ci right 5.006496e-01	k: 4908	n:10000
KS ci ratio: 3.854894e-02	ci left: 4.984503e-01	ci right 5.181449e-01	k: 5083	n:10000
CCDC6   10000 perm   2 sec   (6054 perm/sec)   p_kst 5.083000e-01   p_cons 4.908000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000031/CCDC6.2_1461_10000_0.5083_0.4908_1.png
                gene_name: CCDC6
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
CCDC62
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.273958e-02	ci left: 4.470006e-01	ci right 4.666246e-01	k: 4568	n:10000
Cons ci ratio: 1.199415e-01	ci left: 9.068353e-02	ci right 1.023527e-01	k: 964	n:10000
KS ci ratio: 1.925331e-01	ci left: 3.595770e-02	ci right 4.371330e-02	k: 397	n:10000
CCDC62   10000 perm   2 sec   (5665 perm/sec)   p_kst 3.970000e-02   p_cons 9.640000e-02   p_joint 4.568000e-01

Joint ci ratio: 1.465024e-02	ci left: 7.758587e-01	ci right 7.873593e-01	k: 15633	n:20000
Cons ci ratio: 8.602708e-02	ci left: 8.998976e-02	ci right 9.812870e-02	k: 1880	n:20000
KS ci ratio: 1.372254e-01	ci left: 3.650420e-02	ci right 4.193082e-02	k: 783	n:20000
CCDC62   20000 perm   4 sec   (4970 perm/sec)   p_kst 3.915000e-02   p_cons 9.400000e-02   p_joint 7.816500e-01

Joint ci ratio: 2.539332e-02	ci left: 4.370352e-01	ci right 4.483093e-01	k: 13280	n:30000
Cons ci ratio: 7.081762e-02	ci left: 8.937555e-02	ci right 9.597024e-02	k: 2779	n:30000
KS ci ratio: 1.123436e-01	ci left: 3.680495e-02	ci right 4.121823e-02	k: 1169	n:30000
CCDC62   30000 perm   6 sec   (4722 perm/sec)   p_kst 3.896667e-02   p_cons 9.263333e-02   p_joint 4.426667e-01

Joint ci ratio: 2.677649e-02	ci left: 3.441780e-01	ci right 3.535440e-01	k: 13954	n:40000
Cons ci ratio: 6.178736e-02	ci left: 8.859315e-02	ci right 9.426633e-02	k: 3656	n:40000
KS ci ratio: 9.739023e-02	ci left: 3.702618e-02	ci right 4.084113e-02	k: 1556	n:40000
CCDC62   40000 perm   9 sec   (4539 perm/sec)   p_kst 3.890000e-02   p_cons 9.140000e-02   p_joint 3.488500e-01

Outputting figure to mutsig2_images.part000000000031/CCDC62.2_2155_40000_0.0389_0.0914_0.34885.png
                gene_name: CCDC62
               theta_stop: 0.097 
                    nperm: 40000 
                     p_ks: 0.039 
        ci_ks_bounds_left: 0.037 
       ci_ks_bounds_right: 0.041 
                   p_cons: 0.091 
      ci_cons_bounds_left: 0.089 
     ci_cons_bounds_right: 0.094 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000031
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 31 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1723>
Subject: Job 8003944: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1723>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000032> was used as the working directory.
Started at Sun Nov 11 15:04:32 2012
Results reported at Sun Nov 11 15:09:47 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000032.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000032.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 32  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000032.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    328.14 sec.
    Max Memory :      4765 MB
    Max Swap   :      7095 MB

    Max Processes  :         7
    Max Threads    :        71

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
32
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 32
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 32: processing genes 2806 - 2895
Calculating significance of each gene.
Using projection method.
2806	CCDC64B	1
2807	CCDC65	8.998547e-01
2808	CCDC66	8.730690e-01
2809	CCDC67	3.619393e-01
2810	CCDC68	1.245586e-01
2811	CCDC69	1.680810e-01
2812	CCDC7	6.679622e-01
2813	CCDC70	3.329169e-01
2814	CCDC71	1
2815	CCDC72	1
2816	CCDC73	1
2817	CCDC74A	7.836785e-02
2818	CCDC74B	7.385471e-01
2819	CCDC75	1
2820	CCDC76	3.721387e-01
2821	CCDC77	6.259480e-01
2822	CCDC78	8.261533e-01
2823	CCDC8	8.035768e-01
2824	CCDC80	2.300692e-01
2825	CCDC81	5.614053e-01
2826	CCDC82	7.158881e-01
2827	CCDC83	5.818738e-03
2828	CCDC84	1
2829	CCDC85A	3.316180e-04
2830	CCDC86	3.484481e-01
2831	CCDC87	8.678636e-01
2832	CCDC88A	5.150233e-01
2833	CCDC88B	9.756975e-01
2834	CCDC88C	9.905356e-01
2835	CCDC89	1
2836	CCDC9	7.466398e-01
2837	CCDC90A	3.300058e-01
2838	CCDC90B	1
2839	CCDC91	1.534189e-01
2840	CCDC92	6.759397e-01
2841	CCDC93	2.068919e-01
2842	CCDC94	5.830134e-01
2843	CCDC96	8.873735e-01
2844	CCDC97	1
2845	CCDC99	9.054774e-01
2846	CCHCR1	7.317112e-01
2847	CCIN	8.549462e-01
2848	CCK	1.733572e-01
2849	CCKAR	3.629222e-01
2850	CCKBR	7.498436e-01
2851	CCL1	1
2852	CCL11	1
2853	CCL13	1
2854	CCL14	1.672167e-02
2855	CCL15	1
2856	CCL16	1.820116e-01
2857	CCL17	1
2858	CCL18	1
2859	CCL19	1
2860	CCL2	1
2861	CCL20	2.838428e-01
2862	CCL21	1
2863	CCL22	1
2864	CCL23	1
2865	CCL24	1
2866	CCL25	1
2867	CCL26	6.069736e-03
2868	CCL27	1
2869	CCL28	1.705184e-01
2870	CCL3	3.956670e-02
2871	CCL4	1
2872	CCL5	1
2873	CCL7	3.157063e-01
2874	CCL8	1
2875	CCM2	2.972206e-01
2876	CCNA1	7.319540e-01
2877	CCNA2	5.887359e-01
2878	CCNB1	3.962850e-01
2879	CCNB1IP1	1
2880	CCNB2	6.583528e-01
2881	CCNB3	9.912382e-01
2882	CCNC	1
2883	CCND1	4.767408e-01
2884	CCND2	6.483096e-01
2885	CCND3	3.704843e-01
2886	CCNDBP1	7.813778e-01
2887	CCNE1	1.854824e-01
2888	CCNE2	4.771534e-01
2889	CCNF	8.493358e-01
2890	CCNG1	6.516574e-01
2891	CCNG2	1
2892	CCNH	1
2893	CCNI	1
2894	CCNI2	1
2895	CCNJ	8.049142e-01
Done

Running MutSig 2:
Scatter job 32: processing genes 2806 - 2895
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CCNB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.423087e-02	ci left: 8.771523e-01	ci right 8.898233e-01	k: 8836	n:10000
Cons ci ratio: 2.090368e-02	ci left: 7.703319e-01	ci right 7.867055e-01	k: 7786	n:10000
KS ci ratio: 1.989420e-02	ci left: 7.871550e-01	ci right 8.030727e-01	k: 7952	n:10000
CCNB3   10000 perm   2 sec   (4338 perm/sec)   p_kst 7.952000e-01   p_cons 7.786000e-01   p_joint 8.836000e-01

Outputting figure to mutsig2_images.part000000000032/CCNB3.11_4232_10000_0.7952_0.7786_0.8836.png
                gene_name: CCNB3
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 3 percent done.
CCDC88A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.276448e-02	ci left: 7.391670e-01	ci right 7.562885e-01	k: 7478	n:10000
KS ci ratio: 1.123144e-02	ci left: 9.188379e-01	ci right 9.293135e-01	k: 9242	n:10000
CCDC88A   10000 perm   2 sec   (4196 perm/sec)   p_kst 9.242000e-01   p_cons 7.478000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000032/CCDC88A.10_5744_10000_0.9242_0.7478_1.png
                gene_name: CCDC88A
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 6 percent done.
CCDC80
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.221694e-02	ci left: 5.871085e-01	ci right 6.064351e-01	k: 5968	n:10000
Cons ci ratio: 1.666254e-02	ci left: 8.397935e-01	ci right 8.540038e-01	k: 8470	n:10000
KS ci ratio: 5.377486e-02	ci left: 3.375666e-01	ci right 3.563226e-01	k: 3469	n:10000
CCDC80   10000 perm   2 sec   (4902 perm/sec)   p_kst 3.469000e-01   p_cons 8.470000e-01   p_joint 5.968000e-01

Outputting figure to mutsig2_images.part000000000032/CCDC80.9_2881_10000_0.3469_0.847_0.5968.png
                gene_name: CCDC80
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 9 percent done.
CCDC85A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.389664e-01	ci left: 6.855690e-02	ci right 7.889307e-02	k: 736	n:10000
Cons ci ratio: 3.988200e-02	ci left: 4.814554e-01	ci right 5.011497e-01	k: 4913	n:10000
KS ci ratio: 1.881451e-01	ci left: 3.767505e-02	ci right 4.559480e-02	k: 415	n:10000
CCDC85A   10000 perm   2 sec   (5292 perm/sec)   p_kst 4.150000e-02   p_cons 4.913000e-01   p_joint 7.360000e-02

Joint ci ratio: 9.536353e-02	ci left: 7.417323e-02	ci right 8.165003e-02	k: 1557	n:20000
Cons ci ratio: 2.776644e-02	ci left: 4.921460e-01	ci right 5.060542e-01	k: 9982	n:20000
KS ci ratio: 1.341389e-01	ci left: 3.819702e-02	ci right 4.373744e-02	k: 818	n:20000
CCDC85A   20000 perm   4 sec   (4741 perm/sec)   p_kst 4.090000e-02   p_cons 4.991000e-01   p_joint 7.785000e-02

Joint ci ratio: 8.765260e-02	ci left: 5.975402e-02	ci right 6.526442e-02	k: 1874	n:30000
Cons ci ratio: 2.270202e-02	ci left: 4.927591e-01	ci right 5.041078e-01	k: 14953	n:30000
KS ci ratio: 1.102520e-01	ci left: 3.819990e-02	ci right 4.268966e-02	k: 1212	n:30000
CCDC85A   30000 perm   7 sec   (4544 perm/sec)   p_kst 4.040000e-02   p_cons 4.984333e-01   p_joint 6.246667e-02

Joint ci ratio: 7.289250e-02	ci left: 6.496202e-02	ci right 6.990100e-02	k: 2696	n:40000
Cons ci ratio: 1.975767e-02	ci left: 4.910632e-01	ci right 5.008874e-01	k: 19839	n:40000
KS ci ratio: 9.614415e-02	ci left: 3.797848e-02	ci right 4.183868e-02	k: 1595	n:40000
CCDC85A   40000 perm   9 sec   (4410 perm/sec)   p_kst 3.987500e-02   p_cons 4.959750e-01   p_joint 6.740000e-02

Outputting figure to mutsig2_images.part000000000032/CCDC85A.9_1686_40000_0.039875_0.49597_0.0674.png
                gene_name: CCDC85A
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.040 
        ci_ks_bounds_left: 0.038 
       ci_ks_bounds_right: 0.042 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.067 
     ci_joint_bounds_left: 0.065 
    ci_joint_bounds_right: 0.070 

Current progress: 12 percent done.
CCDC83
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.859697e-02	ci left: 8.085685e-01	ci right 8.238468e-01	k: 8163	n:10000
Cons ci ratio: 4.095797e-02	ci left: 4.681673e-01	ci right 4.878455e-01	k: 4780	n:10000
KS ci ratio: 1.085878e-02	ci left: 9.235838e-01	ci right 9.337648e-01	k: 9288	n:10000
CCDC83   10000 perm   2 sec   (5524 perm/sec)   p_kst 9.288000e-01   p_cons 4.780000e-01   p_joint 8.163000e-01

Outputting figure to mutsig2_images.part000000000032/CCDC83.7_1379_10000_0.9288_0.478_0.8163.png
                gene_name: CCDC83
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 15 percent done.
CCDC73
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.970216e-02	ci left: 3.738555e-01	ci right 3.930125e-01	k: 3834	n:10000
Cons ci ratio: 3.510363e-02	ci left: 5.450946e-01	ci right 5.646734e-01	k: 5549	n:10000
KS ci ratio: 6.616595e-02	ci left: 2.511271e-01	ci right 2.684130e-01	k: 2597	n:10000
CCDC73   10000 perm   2 sec   (5141 perm/sec)   p_kst 2.597000e-01   p_cons 5.549000e-01   p_joint 3.834000e-01

Outputting figure to mutsig2_images.part000000000032/CCDC73.4_3308_10000_0.2597_0.5549_0.3834.png
                gene_name: CCDC73
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 18 percent done.
CCDC74A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.173326e-02	ci left: 1.793015e-01	ci right 1.946813e-01	k: 1869	n:10000
Cons ci ratio: 9.997367e-03	ci left: 9.341299e-01	ci right 9.436124e-01	k: 9390	n:10000
KS ci ratio: 1.344875e-01	ci left: 7.301117e-02	ci right 8.363602e-02	k: 782	n:10000
CCDC74A   10000 perm   2 sec   (5823 perm/sec)   p_kst 7.820000e-02   p_cons 9.390000e-01   p_joint 1.869000e-01

Joint ci ratio: 5.895144e-02	ci left: 1.756857e-01	ci right 1.864072e-01	k: 3620	n:20000
Cons ci ratio: 7.615334e-03	ci left: 9.262225e-01	ci right 9.333519e-01	k: 18597	n:20000
KS ci ratio: 9.606744e-02	ci left: 7.314641e-02	ci right 8.057716e-02	k: 1536	n:20000
CCDC74A   20000 perm   4 sec   (5159 perm/sec)   p_kst 7.680000e-02   p_cons 9.298500e-01   p_joint 1.810000e-01

Outputting figure to mutsig2_images.part000000000032/CCDC74A.4_1169_20000_0.0768_0.92985_0.181.png
                gene_name: CCDC74A
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.077 
        ci_ks_bounds_left: 0.073 
       ci_ks_bounds_right: 0.081 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 21 percent done.
CCDC93
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.175413e-02	ci left: 4.585802e-01	ci right 4.782382e-01	k: 4684	n:10000
Cons ci ratio: 9.735533e-02	ci left: 1.326671e-01	ci right 1.463436e-01	k: 1394	n:10000
KS ci ratio: 2.755249e-02	ci left: 6.599808e-01	ci right 6.785206e-01	k: 6693	n:10000
CCDC93   10000 perm   2 sec   (5567 perm/sec)   p_kst 6.693000e-01   p_cons 1.394000e-01   p_joint 4.684000e-01

Outputting figure to mutsig2_images.part000000000032/CCDC93.4_1992_10000_0.6693_0.1394_0.4684.png
                gene_name: CCDC93
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 24 percent done.
CCDC67
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.216596e-02	ci left: 9.064824e-01	ci right 9.176761e-01	k: 9122	n:10000
Cons ci ratio: 7.102432e-03	ci left: 9.646769e-01	ci right 9.716469e-01	k: 9683	n:10000
KS ci ratio: 4.388548e-02	ci left: 4.339301e-01	ci right 4.535027e-01	k: 4437	n:10000
CCDC67   10000 perm   2 sec   (5827 perm/sec)   p_kst 4.437000e-01   p_cons 9.683000e-01   p_joint 9.122000e-01

Outputting figure to mutsig2_images.part000000000032/CCDC67.3_1867_10000_0.4437_0.9683_0.9122.png
                gene_name: CCDC67
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 26 percent done.
CCDC68
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.809187e-03	ci left: 9.755703e-01	ci right 9.813463e-01	k: 9786	n:10000
Cons ci ratio: 3.547462e-02	ci left: 5.398854e-01	ci right 5.594856e-01	k: 5497	n:10000
KS ci ratio: 5.512284e-03	ci left: 9.778092e-01	ci right 9.833058e-01	k: 9807	n:10000
CCDC68   10000 perm   2 sec   (6524 perm/sec)   p_kst 9.807000e-01   p_cons 5.497000e-01   p_joint 9.786000e-01

Outputting figure to mutsig2_images.part000000000032/CCDC68.3_1048_10000_0.9807_0.5497_0.9786.png
                gene_name: CCDC68
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 29 percent done.
CCDC8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.357336e-02	ci left: 5.670453e-01	ci right 5.865100e-01	k: 5768	n:10000
Cons ci ratio: 5.939737e-02	ci left: 2.942987e-01	ci right 3.124160e-01	k: 3033	n:10000
KS ci ratio: 3.092731e-02	ci left: 6.066862e-01	ci right 6.258460e-01	k: 6163	n:10000
CCDC8   10000 perm   2 sec   (5946 perm/sec)   p_kst 6.163000e-01   p_cons 3.033000e-01   p_joint 5.768000e-01

Outputting figure to mutsig2_images.part000000000032/CCDC8.3_1621_10000_0.6163_0.3033_0.5768.png
                gene_name: CCDC8
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 32 percent done.
CCDC91
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.362839e-02	ci left: 5.662431e-01	ci right 5.857126e-01	k: 5760	n:10000
Cons ci ratio: 2.094004e-02	ci left: 7.697242e-01	ci right 7.861136e-01	k: 7780	n:10000
KS ci ratio: 6.187607e-02	ci left: 2.774536e-01	ci right 2.952710e-01	k: 2863	n:10000
CCDC91   10000 perm   2 sec   (6235 perm/sec)   p_kst 2.863000e-01   p_cons 7.780000e-01   p_joint 5.760000e-01

Outputting figure to mutsig2_images.part000000000032/CCDC91.3_1374_10000_0.2863_0.778_0.576.png
                gene_name: CCDC91
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 35 percent done.
CCHCR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.423637e-02	ci left: 1.704491e-01	ci right 1.855389e-01	k: 1779	n:10000
Cons ci ratio: 5.569957e-03	ci left: 9.773822e-01	ci right 9.829331e-01	k: 9803	n:10000
KS ci ratio: 1.202174e-01	ci left: 9.029438e-02	ci right 1.019421e-01	k: 960	n:10000
CCHCR1   10000 perm   2 sec   (5571 perm/sec)   p_kst 9.600000e-02   p_cons 9.803000e-01   p_joint 1.779000e-01

Joint ci ratio: 5.493905e-02	ci left: 1.972955e-01	ci right 2.084910e-01	k: 4057	n:20000
Cons ci ratio: 3.898264e-03	ci left: 9.786445e-01	ci right 9.825140e-01	k: 19613	n:20000
KS ci ratio: 8.459497e-02	ci left: 9.283400e-02	ci right 1.010836e-01	k: 1938	n:20000
CCHCR1   20000 perm   4 sec   (4988 perm/sec)   p_kst 9.690000e-02   p_cons 9.806500e-01   p_joint 2.028500e-01

Outputting figure to mutsig2_images.part000000000032/CCHCR1.3_2688_20000_0.0969_0.98065_0.20285.png
                gene_name: CCHCR1
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.097 
        ci_ks_bounds_left: 0.093 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 38 percent done.
CCM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.021741e-01	ci left: 1.217066e-01	ci right 1.349108e-01	k: 1282	n:10000
Cons ci ratio: 1.039475e-01	ci left: 1.179914e-01	ci right 1.310282e-01	k: 1244	n:10000
KS ci ratio: 1.043788e-01	ci left: 1.171118e-01	ci right 1.301083e-01	k: 1235	n:10000
CCM2   10000 perm   2 sec   (6074 perm/sec)   p_kst 1.235000e-01   p_cons 1.244000e-01   p_joint 1.282000e-01

Joint ci ratio: 6.533036e-02	ci left: 1.475434e-01	ci right 1.575579e-01	k: 3050	n:20000
Cons ci ratio: 6.973015e-02	ci left: 1.316715e-01	ci right 1.412345e-01	k: 2728	n:20000
KS ci ratio: 7.316803e-02	ci left: 1.208892e-01	ci right 1.301200e-01	k: 2509	n:20000
CCM2   20000 perm   4 sec   (5353 perm/sec)   p_kst 1.254500e-01   p_cons 1.364000e-01   p_joint 1.525000e-01

Outputting figure to mutsig2_images.part000000000032/CCM2.3_1472_20000_0.12545_0.1364_0.1525.png
                gene_name: CCM2
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 41 percent done.
CCND2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.874557e-02	ci left: 8.061311e-01	ci right 8.214857e-01	k: 8139	n:10000
KS ci ratio: 1.186767e-02	ci left: 9.104942e-01	ci right 9.214620e-01	k: 9161	n:10000
CCND2   10000 perm   2 sec   (6314 perm/sec)   p_kst 9.161000e-01   p_cons 8.139000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000032/CCND2.3_890_10000_0.9161_0.8139_1.png
                gene_name: CCND2
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 44 percent done.
CCNE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.817613e-03	ci left: 9.886188e-01	ci right 9.924873e-01	k: 9907	n:10000
KS ci ratio: 3.953258e-02	ci left: 4.858530e-01	ci right 5.055495e-01	k: 4957	n:10000
CCNE1   10000 perm   2 sec   (6139 perm/sec)   p_kst 4.957000e-01   p_cons 9.907000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000032/CCNE1.3_1277_10000_0.4957_0.9907_1.png
                gene_name: CCNE1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 47 percent done.
CCDC66
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.764788e-02	ci left: 8.240174e-01	ci right 8.387890e-01	k: 8315	n:10000
KS ci ratio: 2.763965e-02	ci left: 6.585713e-01	ci right 6.771308e-01	k: 6679	n:10000
CCDC66   10000 perm   2 sec   (5943 perm/sec)   p_kst 6.679000e-01   p_cons 8.315000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000032/CCDC66.2_2919_10000_0.6679_0.8315_1.png
                gene_name: CCDC66
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
CCDC69
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.463565e-03	ci left: 9.613148e-01	ci right 9.686110e-01	k: 9651	n:10000
Cons ci ratio: 1.854737e-02	ci left: 8.093811e-01	ci right 8.246338e-01	k: 8171	n:10000
KS ci ratio: 1.310676e-02	ci left: 8.934402e-01	ci right 9.053260e-01	k: 8995	n:10000
CCDC69   10000 perm   1 sec   (6697 perm/sec)   p_kst 8.995000e-01   p_cons 8.171000e-01   p_joint 9.651000e-01

Outputting figure to mutsig2_images.part000000000032/CCDC69.2_927_10000_0.8995_0.8171_0.9651.png
                gene_name: CCDC69
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 53 percent done.
CCDC70
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.029523e-02	ci left: 2.287917e-01	ci right 2.455617e-01	k: 2371	n:10000
Cons ci ratio: 7.355244e-02	ci left: 2.129985e-01	ci right 2.293642e-01	k: 2211	n:10000
KS ci ratio: 1.186529e-01	ci left: 9.253239e-02	ci right 1.043027e-01	k: 983	n:10000
CCDC70   10000 perm   1 sec   (6843 perm/sec)   p_kst 9.830000e-02   p_cons 2.211000e-01   p_joint 2.371000e-01

Joint ci ratio: 6.894231e-02	ci left: 1.343318e-01	ci right 1.439734e-01	k: 2782	n:20000
Cons ci ratio: 5.219941e-02	ci left: 2.141759e-01	ci right 2.257056e-01	k: 4398	n:20000
KS ci ratio: 8.440230e-02	ci left: 9.322640e-02	ci right 1.014911e-01	k: 1946	n:20000
CCDC70   20000 perm   3 sec   (5998 perm/sec)   p_kst 9.730000e-02   p_cons 2.199000e-01   p_joint 1.391000e-01

Outputting figure to mutsig2_images.part000000000032/CCDC70.2_706_20000_0.0973_0.2199_0.1391.png
                gene_name: CCDC70
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.097 
        ci_ks_bounds_left: 0.093 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 56 percent done.
CCDC76
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.227578e-02	ci left: 7.473571e-01	ci right 7.642936e-01	k: 7559	n:10000
KS ci ratio: 6.880239e-03	ci left: 9.666774e-01	ci right 9.734451e-01	k: 9702	n:10000
CCDC76   10000 perm   2 sec   (6393 perm/sec)   p_kst 9.702000e-01   p_cons 7.559000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000032/CCDC76.2_1490_10000_0.9702_0.7559_1.png
                gene_name: CCDC76
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 59 percent done.
CCDC77
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.864885e-02	ci left: 6.423696e-01	ci right 6.611419e-01	k: 6518	n:10000
Cons ci ratio: 4.550381e-02	ci left: 4.161812e-01	ci right 4.356620e-01	k: 4259	n:10000
KS ci ratio: 1.239222e-02	ci left: 9.033987e-01	ci right 9.147617e-01	k: 9092	n:10000
CCDC77   10000 perm   2 sec   (6638 perm/sec)   p_kst 9.092000e-01   p_cons 4.259000e-01   p_joint 6.518000e-01

Outputting figure to mutsig2_images.part000000000032/CCDC77.2_1511_10000_0.9092_0.4259_0.6518.png
                gene_name: CCDC77
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 62 percent done.
CCDC81
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.295281e-02	ci left: 2.705218e-01	ci right 2.882069e-01	k: 2793	n:10000
Cons ci ratio: 7.974606e-02	ci left: 1.867820e-01	ci right 2.023963e-01	k: 1945	n:10000
KS ci ratio: 4.111420e-02	ci left: 4.662695e-01	ci right 4.859444e-01	k: 4761	n:10000
CCDC81   10000 perm   2 sec   (6174 perm/sec)   p_kst 4.761000e-01   p_cons 1.945000e-01   p_joint 2.793000e-01

Outputting figure to mutsig2_images.part000000000032/CCDC81.2_2019_10000_0.4761_0.1945_0.2793.png
                gene_name: CCDC81
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 65 percent done.
CCDC86
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.709323e-02	ci left: 6.674321e-01	ci right 6.858649e-01	k: 6767	n:10000
Cons ci ratio: 4.519813e-02	ci left: 4.194707e-01	ci right 4.389705e-01	k: 4292	n:10000
KS ci ratio: 1.979647e-02	ci left: 7.887776e-01	ci right 8.046492e-01	k: 7968	n:10000
CCDC86   10000 perm   2 sec   (6618 perm/sec)   p_kst 7.968000e-01   p_cons 4.292000e-01   p_joint 6.767000e-01

Outputting figure to mutsig2_images.part000000000032/CCDC86.2_1099_10000_0.7968_0.4292_0.6767.png
                gene_name: CCDC86
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 68 percent done.
CCDC87
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.035556e-02	ci left: 4.755598e-01	ci right 4.952487e-01	k: 4854	n:10000
KS ci ratio: 7.074492e-02	ci left: 2.265204e-01	ci right 2.432343e-01	k: 2348	n:10000
CCDC87   10000 perm   2 sec   (5889 perm/sec)   p_kst 2.348000e-01   p_cons 4.854000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000032/CCDC87.2_2554_10000_0.2348_0.4854_1.png
                gene_name: CCDC87
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
CCDC88B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.709886e-03	ci left: 9.971567e-01	ci right 9.989329e-01	k: 9982	n:10000
KS ci ratio: 1.439627e-02	ci left: 8.746972e-01	ci right 8.874798e-01	k: 8812	n:10000
CCDC88B   10000 perm   2 sec   (5240 perm/sec)   p_kst 8.812000e-01   p_cons 9.982000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000032/CCDC88B.2_4539_10000_0.8812_0.9982_1.png
                gene_name: CCDC88B
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 74 percent done.
CCDC88C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.051534e-02	ci left: 7.768156e-01	ci right 7.930181e-01	k: 7850	n:10000
Cons ci ratio: 3.855665e-02	ci left: 4.983503e-01	ci right 5.180449e-01	k: 5082	n:10000
KS ci ratio: 4.454027e-02	ci left: 4.266495e-01	ci right 4.461876e-01	k: 4364	n:10000
CCDC88C   10000 perm   2 sec   (4843 perm/sec)   p_kst 4.364000e-01   p_cons 5.082000e-01   p_joint 7.850000e-01

Outputting figure to mutsig2_images.part000000000032/CCDC88C.2_6207_10000_0.4364_0.5082_0.785.png
                gene_name: CCDC88C
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.79 

Current progress: 76 percent done.
CCKAR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.890621e-02	ci left: 8.034910e-01	ci right 8.189273e-01	k: 8113	n:10000
Cons ci ratio: 1.127108e-01	ci left: 1.017865e-01	ci right 1.140430e-01	k: 1078	n:10000
KS ci ratio: 1.928796e-02	ci left: 7.971977e-01	ci right 8.128242e-01	k: 8051	n:10000
CCKAR   10000 perm   2 sec   (6448 perm/sec)   p_kst 8.051000e-01   p_cons 1.078000e-01   p_joint 8.113000e-01

Joint ci ratio: 5.371268e-03	ci left: 9.611697e-01	ci right 9.663944e-01	k: 19277	n:20000
Cons ci ratio: 7.941166e-02	ci left: 1.042709e-01	ci right 1.129432e-01	k: 2171	n:20000
KS ci ratio: 1.386605e-02	ci left: 7.942364e-01	ci right 8.053763e-01	k: 15997	n:20000
CCKAR   20000 perm   4 sec   (5620 perm/sec)   p_kst 7.998500e-01   p_cons 1.085500e-01   p_joint 9.638500e-01

Outputting figure to mutsig2_images.part000000000032/CCKAR.2_1307_20000_0.79985_0.10855_0.96385.png
                gene_name: CCKAR
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 79 percent done.
CCKBR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.148093e-02	ci left: 2.228673e-01	ci right 2.394896e-01	k: 2311	n:10000
Cons ci ratio: 1.321513e-02	ci left: 8.919018e-01	ci right 9.038653e-01	k: 8980	n:10000
KS ci ratio: 2.309509e-01	ci left: 2.476030e-02	ci right 3.131851e-02	k: 279	n:10000
CCKBR   10000 perm   2 sec   (6384 perm/sec)   p_kst 2.790000e-02   p_cons 8.980000e-01   p_joint 2.311000e-01

Joint ci ratio: 6.291445e-02	ci left: 1.574116e-01	ci right 1.676867e-01	k: 3250	n:20000
Cons ci ratio: 9.335532e-03	ci left: 8.938753e-01	ci right 9.023086e-01	k: 17963	n:20000
KS ci ratio: 1.662350e-01	ci left: 2.479765e-02	ci right 2.934125e-02	k: 540	n:20000
CCKBR   20000 perm   4 sec   (5584 perm/sec)   p_kst 2.700000e-02   p_cons 8.981500e-01   p_joint 1.625000e-01

Joint ci ratio: 6.488445e-02	ci left: 1.049363e-01	ci right 1.120064e-01	k: 3253	n:30000
Cons ci ratio: 7.590793e-03	ci left: 8.954333e-01	ci right 9.022892e-01	k: 26967	n:30000
KS ci ratio: 1.333438e-01	ci left: 2.613009e-02	ci right 2.989539e-02	k: 839	n:30000
CCKBR   30000 perm   6 sec   (5303 perm/sec)   p_kst 2.796667e-02   p_cons 8.989000e-01   p_joint 1.084333e-01

Joint ci ratio: 6.322496e-02	ci left: 8.489626e-02	ci right 9.046377e-02	k: 3506	n:40000
Cons ci ratio: 6.552850e-03	ci left: 8.964866e-01	ci right 9.024052e-01	k: 35979	n:40000
KS ci ratio: 1.174915e-01	ci left: 2.548209e-02	ci right 2.868706e-02	k: 1082	n:40000
CCKBR   40000 perm   8 sec   (5121 perm/sec)   p_kst 2.705000e-02   p_cons 8.994750e-01   p_joint 8.765000e-02

Joint ci ratio: 3.754172e-02	ci left: 1.756485e-01	ci right 1.823888e-01	k: 8950	n:50000
Cons ci ratio: 5.885396e-03	ci left: 8.960423e-01	ci right 9.013513e-01	k: 44936	n:50000
KS ci ratio: 1.054789e-01	ci left: 2.546041e-02	ci right 2.831488e-02	k: 1343	n:50000
CCKBR   50000 perm   10 sec   (5123 perm/sec)   p_kst 2.686000e-02   p_cons 8.987200e-01   p_joint 1.790000e-01

Joint ci ratio: 5.139058e-02	ci left: 8.612370e-02	ci right 9.068287e-02	k: 5303	n:60000
Cons ci ratio: 5.369211e-03	ci left: 8.963928e-01	ci right 9.012352e-01	k: 53930	n:60000
KS ci ratio: 9.564471e-02	ci left: 2.592928e-02	ci right 2.855005e-02	k: 1633	n:60000
CCKBR   60000 perm   12 sec   (5085 perm/sec)   p_kst 2.721667e-02   p_cons 8.988333e-01   p_joint 8.838333e-02

Outputting figure to mutsig2_images.part000000000032/CCKBR.2_1364_60000_0.027217_0.89883_0.088383.png
                gene_name: CCKBR
               theta_stop: 0.096 
                    nperm: 60000 
                     p_ks: 0.027 
        ci_ks_bounds_left: 0.026 
       ci_ks_bounds_right: 0.029 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.088 
     ci_joint_bounds_left: 0.086 
    ci_joint_bounds_right: 0.091 

Current progress: 82 percent done.
CCL14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.631317e-02	ci left: 4.076104e-01	ci right 4.270378e-01	k: 4173	n:10000
Cons ci ratio: 4.618013e-02	ci left: 4.090055e-01	ci right 4.284419e-01	k: 4187	n:10000
KS ci ratio: 8.417885e-02	ci left: 1.706458e-01	ci right 1.857422e-01	k: 1781	n:10000
CCL14   10000 perm   1 sec   (8236 perm/sec)   p_kst 1.781000e-01   p_cons 4.187000e-01   p_joint 4.173000e-01

Outputting figure to mutsig2_images.part000000000032/CCL14.2_346_10000_0.1781_0.4187_0.4173.png
                gene_name: CCL14
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 85 percent done.
CCL26
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.452096e-02	ci left: 2.608218e-01	ci right 2.783127e-01	k: 2695	n:10000
Cons ci ratio: 1.107643e-01	ci left: 1.051021e-01	ci right 1.175253e-01	k: 1112	n:10000
KS ci ratio: 4.275680e-02	ci left: 4.468010e-01	ci right 4.664243e-01	k: 4566	n:10000
CCL26   10000 perm   1 sec   (8073 perm/sec)   p_kst 4.566000e-01   p_cons 1.112000e-01   p_joint 2.695000e-01

Joint ci ratio: 4.837076e-02	ci left: 2.411839e-01	ci right 2.531897e-01	k: 4943	n:20000
Cons ci ratio: 7.840294e-02	ci left: 1.067273e-01	ci right 1.154861e-01	k: 2221	n:20000
KS ci ratio: 3.091525e-02	ci left: 4.386949e-01	ci right 4.525209e-01	k: 8912	n:20000
CCL26   20000 perm   3 sec   (7036 perm/sec)   p_kst 4.456000e-01   p_cons 1.110500e-01   p_joint 2.471500e-01

Outputting figure to mutsig2_images.part000000000032/CCL26.2_297_20000_0.4456_0.11105_0.24715.png
                gene_name: CCL26
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 88 percent done.
CCL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.635127e-02	ci left: 4.072119e-01	ci right 4.266366e-01	k: 4169	n:10000
KS ci ratio: 1.658537e-02	ci left: 8.410158e-01	ci right 8.551807e-01	k: 8482	n:10000
CCL3   10000 perm   1 sec   (8133 perm/sec)   p_kst 8.482000e-01   p_cons 4.169000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000032/CCL3.2_291_10000_0.8482_0.4169_1.png
                gene_name: CCL3
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
CCNB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.596680e-02	ci left: 6.858703e-01	ci right 7.040160e-01	k: 6950	n:10000
KS ci ratio: 3.107132e-02	ci left: 6.044766e-01	ci right 6.236569e-01	k: 6141	n:10000
CCNB1   10000 perm   2 sec   (6199 perm/sec)   p_kst 6.141000e-01   p_cons 6.950000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000032/CCNB1.2_1338_10000_0.6141_0.695_1.png
                gene_name: CCNB1
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
CCNE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.264082e-03	ci left: 9.861030e-01	ci right 9.904055e-01	k: 9884	n:10000
Cons ci ratio: 1.545556e-02	ci left: 8.586563e-01	ci right 8.721300e-01	k: 8655	n:10000
KS ci ratio: 9.615707e-02	ci left: 1.356056e-01	ci right 1.494034e-01	k: 1424	n:10000
CCNE2   10000 perm   1 sec   (6777 perm/sec)   p_kst 1.424000e-01   p_cons 8.655000e-01   p_joint 9.884000e-01

Outputting figure to mutsig2_images.part000000000032/CCNE2.2_1259_10000_0.1424_0.8655_0.9884.png
                gene_name: CCNE2
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 97 percent done.
CCNF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.011761e-02	ci left: 1.518829e-01	ci right 1.663162e-01	k: 1590	n:10000
Cons ci ratio: 5.318683e-02	ci left: 3.425342e-01	ci right 3.613521e-01	k: 3519	n:10000
KS ci ratio: 1.096042e-01	ci left: 1.071510e-01	ci right 1.196752e-01	k: 1133	n:10000
CCNF   10000 perm   2 sec   (6359 perm/sec)   p_kst 1.133000e-01   p_cons 3.519000e-01   p_joint 1.590000e-01

Joint ci ratio: 3.461893e-02	ci left: 3.838297e-01	ci right 3.974021e-01	k: 7812	n:20000
Cons ci ratio: 3.735451e-02	ci left: 3.484145e-01	ci right 3.617276e-01	k: 7101	n:20000
KS ci ratio: 7.818539e-02	ci left: 1.072678e-01	ci right 1.160454e-01	k: 2232	n:20000
CCNF   20000 perm   4 sec   (5510 perm/sec)   p_kst 1.116000e-01   p_cons 3.550500e-01   p_joint 3.906000e-01

Outputting figure to mutsig2_images.part000000000032/CCNF.2_2429_20000_0.1116_0.35505_0.3906.png
                gene_name: CCNF
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000032
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 32 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1725>
Subject: Job 8003947: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1725>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000033> was used as the working directory.
Started at Sun Nov 11 15:04:32 2012
Results reported at Sun Nov 11 15:11:04 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000033.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000033.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 33  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000033.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    406.26 sec.
    Max Memory :      4751 MB
    Max Swap   :      7098 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
33
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 33
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 33: processing genes 2896 - 2986
Calculating significance of each gene.
Using projection method.
2896	CCNJL	3.950216e-01
2897	CCNK	2.480340e-01
2898	CCNL1	8.766535e-01
2899	CCNL2	8.153217e-01
2900	CCNO	4.234739e-01
2901	CCNT1	6.114230e-01
2902	CCNT2	9.131162e-01
2903	CCNY	4.908012e-01
2904	CCNYL1	4.849625e-01
2905	CCPG1	7.589025e-01
2906	CCR1	1.986065e-01
2907	CCR10	3.640966e-01
2908	CCR2	6.477489e-01
2909	CCR3	5.427134e-01
2910	CCR4	1.582708e-01
2911	CCR5	2.692612e-01
2912	CCR6	1
2913	CCR7	1
2914	CCR8	5.795474e-01
2915	CCR9	7.761793e-01
2916	CCRL1	3.563353e-01
2917	CCRL2	5.595354e-01
2918	CCRN4L	1
2919	CCS	1
2920	CCT2	1
2921	CCT3	1
2922	CCT4	1
2923	CCT5	7.813926e-01
2924	CCT6A	1
2925	CCT6B	1
2926	CCT7	1
2927	CCT8	1
2928	CCT8L2	3.723662e-03
2929	CD101	7.910877e-01
2930	CD109	3.971915e-01
2931	CD14	5.897158e-01
2932	CD151	6.262242e-01
2933	CD160	2.303294e-01
2934	CD163	5.247469e-01
2935	CD163L1	9.740797e-01
2936	CD164	1.689262e-01
2937	CD164L2	2.808937e-01
2938	CD177	3.748967e-01
2939	CD180	6.436943e-01
2940	CD19	7.684049e-01
2941	CD1A	6.857016e-01
2942	CD1B	1.529668e-03
2943	CD1C	4.901060e-03
2944	CD1D	3.098784e-02
2945	CD1E	5.844879e-01
2946	CD2	1
2947	CD200	6.370454e-01
2948	CD200R1	1
2949	CD200R1L	3.156461e-01
2950	CD207	3.132717e-02
2951	CD209	6.235867e-01
2952	CD22	5.011224e-01
2953	CD226	1.389272e-02
2954	CD244	2.201915e-01
2955	CD247	1
2956	CD248	9.277204e-01
2957	CD27	4.329870e-01
2958	CD274	1
2959	CD276	5.697613e-01
2960	CD28	1
2961	CD2AP	1
2962	CD2BP2	2.040161e-01
2963	CD300A	4.928756e-01
2964	CD300C	1
2965	CD300E	4.152361e-01
2966	CD300LB	1.660344e-01
2967	CD300LD	1
2968	CD300LF	5.279818e-01
2969	CD300LG	1.965456e-01
2970	CD302	1
2971	CD320	1
2972	CD33	1.819454e-01
2973	CD34	1
2974	CD36	8.238151e-01
2975	CD37	1.240316e-01
2976	CD38	3.893322e-01
2977	CD3D	3.275488e-01
2978	CD3E	1
2979	CD3EAP	1
2980	CD3G	1
2981	CD4	7.820443e-01
2982	CD40	2.407962e-01
2983	CD40LG	1.395198e-01
2984	CD44	1.694431e-01
2985	CD46	3.429380e-01
2986	CD47	1.419134e-01
Done

Running MutSig 2:
Scatter job 33: processing genes 2896 - 2986
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CD163
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.228785e-02	ci left: 7.471549e-01	ci right 7.640960e-01	k: 7557	n:10000
Cons ci ratio: 3.644533e-02	ci left: 5.264667e-01	ci right 5.461122e-01	k: 5363	n:10000
KS ci ratio: 3.907674e-02	ci left: 4.916510e-01	ci right 5.113481e-01	k: 5015	n:10000
CD163   10000 perm   2 sec   (4116 perm/sec)   p_kst 5.015000e-01   p_cons 5.363000e-01   p_joint 7.557000e-01

Outputting figure to mutsig2_images.part000000000033/CD163.13_3535_10000_0.5015_0.5363_0.7557.png
                gene_name: CD163
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.76 

Current progress: 2 percent done.
CCT8L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.731015e-02	ci left: 6.639075e-01	ci right 6.823916e-01	k: 6732	n:10000
KS ci ratio: 1.179813e-02	ci left: 9.114205e-01	ci right 9.223352e-01	k: 9170	n:10000
CCT8L2   10000 perm   2 sec   (5531 perm/sec)   p_kst 9.170000e-01   p_cons 6.732000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000033/CCT8L2.9_1678_10000_0.917_0.6732_1.png
                gene_name: CCT8L2
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 4 percent done.
CD163L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.492391e-02	ci left: 7.031147e-01	ci right 7.209616e-01	k: 7121	n:10000
Cons ci ratio: 5.204093e-02	ci left: 3.524727e-01	ci right 3.714078e-01	k: 3619	n:10000
KS ci ratio: 1.001478e-02	ci left: 9.339228e-01	ci right 9.434196e-01	k: 9388	n:10000
CD163L1   10000 perm   2 sec   (4689 perm/sec)   p_kst 9.388000e-01   p_cons 3.619000e-01   p_joint 7.121000e-01

Outputting figure to mutsig2_images.part000000000033/CD163L1.9_4438_10000_0.9388_0.3619_0.7121.png
                gene_name: CD163L1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 7 percent done.
CD109
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.953258e-02	ci left: 4.858530e-01	ci right 5.055495e-01	k: 4957	n:10000
KS ci ratio: 1.637241e-02	ci left: 8.443782e-01	ci right 8.584164e-01	k: 8515	n:10000
CD109   10000 perm   2 sec   (4962 perm/sec)   p_kst 8.515000e-01   p_cons 4.957000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000033/CD109.8_4470_10000_0.8515_0.4957_1.png
                gene_name: CD109
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 9 percent done.
CD101
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.535299e-02	ci left: 5.415883e-01	ci right 5.611817e-01	k: 5514	n:10000
Cons ci ratio: 5.966541e-02	ci left: 2.924153e-01	ci right 3.105005e-01	k: 3014	n:10000
KS ci ratio: 4.149518e-02	ci left: 4.616756e-01	ci right 4.813410e-01	k: 4715	n:10000
CD101   10000 perm   2 sec   (5086 perm/sec)   p_kst 4.715000e-01   p_cons 3.014000e-01   p_joint 5.514000e-01

Outputting figure to mutsig2_images.part000000000033/CD101.6_3102_10000_0.4715_0.3014_0.5514.png
                gene_name: CD101
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 11 percent done.
CD1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.952724e-02	ci left: 7.932406e-01	ci right 8.089836e-01	k: 8012	n:10000
KS ci ratio: 1.188309e-02	ci left: 9.102884e-01	ci right 9.212679e-01	k: 9159	n:10000
CD1B   10000 perm   2 sec   (5801 perm/sec)   p_kst 9.159000e-01   p_cons 8.012000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000033/CD1B.6_1026_10000_0.9159_0.8012_1.png
                gene_name: CD1B
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 13 percent done.
CD1C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.129453e-02	ci left: 3.591340e-01	ci right 3.781425e-01	k: 3686	n:10000
Cons ci ratio: 4.435967e-02	ci left: 4.286440e-01	ci right 4.481919e-01	k: 4384	n:10000
KS ci ratio: 7.649036e-02	ci left: 1.999823e-01	ci right 2.159882e-01	k: 2079	n:10000
CD1C   10000 perm   2 sec   (6352 perm/sec)   p_kst 2.079000e-01   p_cons 4.384000e-01   p_joint 3.686000e-01

Outputting figure to mutsig2_images.part000000000033/CD1C.6_1026_10000_0.2079_0.4384_0.3686.png
                gene_name: CD1C
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 16 percent done.
CD22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.839059e-02	ci left: 6.464944e-01	ci right 6.652148e-01	k: 6559	n:10000
Cons ci ratio: 8.661395e-02	ci left: 1.625864e-01	ci right 1.774064e-01	k: 1699	n:10000
KS ci ratio: 1.240721e-02	ci left: 9.031932e-01	ci right 9.145673e-01	k: 9090	n:10000
CD22   10000 perm   2 sec   (5006 perm/sec)   p_kst 9.090000e-01   p_cons 1.699000e-01   p_joint 6.559000e-01

Outputting figure to mutsig2_images.part000000000033/CD22.6_2596_10000_0.909_0.1699_0.6559.png
                gene_name: CD22
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 18 percent done.
CD207
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.749955e-02	ci left: 3.080829e-01	ci right 3.264237e-01	k: 3172	n:10000
Cons ci ratio: 5.875724e-02	ci left: 2.988593e-01	ci right 3.170527e-01	k: 3079	n:10000
KS ci ratio: 7.298081e-02	ci left: 2.156624e-01	ci right 2.320987e-01	k: 2238	n:10000
CD207   10000 perm   2 sec   (5549 perm/sec)   p_kst 2.238000e-01   p_cons 3.079000e-01   p_joint 3.172000e-01

Outputting figure to mutsig2_images.part000000000033/CD207.5_1011_10000_0.2238_0.3079_0.3172.png
                gene_name: CD207
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 20 percent done.
CD226
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.733738e-02	ci left: 3.970506e-01	ci right 4.164037e-01	k: 4067	n:10000
Cons ci ratio: 9.892670e-02	ci left: 1.289466e-01	ci right 1.424664e-01	k: 1356	n:10000
KS ci ratio: 1.050197e-02	ci left: 9.280257e-01	ci right 9.379203e-01	k: 9331	n:10000
CD226   10000 perm   2 sec   (5285 perm/sec)   p_kst 9.331000e-01   p_cons 1.356000e-01   p_joint 4.067000e-01

Outputting figure to mutsig2_images.part000000000033/CD226.5_1035_10000_0.9331_0.1356_0.4067.png
                gene_name: CD226
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 22 percent done.
CD44
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.908765e-02	ci left: 1.549259e-01	ci right 1.694715e-01	k: 1621	n:10000
Cons ci ratio: 3.752878e-02	ci left: 5.118543e-01	ci right 5.315331e-01	k: 5217	n:10000
KS ci ratio: 1.438733e-01	ci left: 6.410846e-02	ci right 7.414431e-02	k: 690	n:10000
CD44   10000 perm   2 sec   (4863 perm/sec)   p_kst 6.900000e-02   p_cons 5.217000e-01   p_joint 1.621000e-01

Joint ci ratio: 6.458270e-02	ci left: 1.505031e-01	ci right 1.605973e-01	k: 3110	n:20000
Cons ci ratio: 2.578803e-02	ci left: 5.290587e-01	ci right 5.429309e-01	k: 10720	n:20000
KS ci ratio: 1.019341e-01	ci left: 6.532996e-02	ci right 7.239601e-02	k: 1376	n:20000
CD44   20000 perm   4 sec   (4533 perm/sec)   p_kst 6.880000e-02   p_cons 5.360000e-01   p_joint 1.555000e-01

Joint ci ratio: 6.538133e-02	ci left: 1.034908e-01	ci right 1.105189e-01	k: 3209	n:30000
Cons ci ratio: 2.175193e-02	ci left: 5.141282e-01	ci right 5.254680e-01	k: 15594	n:30000
KS ci ratio: 8.315383e-02	ci left: 6.609174e-02	ci right 7.185874e-02	k: 2068	n:30000
CD44   30000 perm   7 sec   (4380 perm/sec)   p_kst 6.893333e-02   p_cons 5.198000e-01   p_joint 1.069667e-01

Outputting figure to mutsig2_images.part000000000033/CD44.5_2301_30000_0.068933_0.5198_0.10697.png
                gene_name: CD44
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.069 
        ci_ks_bounds_left: 0.066 
       ci_ks_bounds_right: 0.072 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 24 percent done.
CD1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.594478e-02	ci left: 1.647481e-01	ci right 1.796434e-01	k: 1721	n:10000
Cons ci ratio: 3.194324e-02	ci left: 5.912235e-01	ci right 6.105177e-01	k: 6009	n:10000
KS ci ratio: 1.227051e-01	ci left: 8.689066e-02	ci right 9.834794e-02	k: 925	n:10000
CD1A   10000 perm   2 sec   (5913 perm/sec)   p_kst 9.250000e-02   p_cons 6.009000e-01   p_joint 1.721000e-01

Joint ci ratio: 4.981684e-02	ci left: 2.304758e-01	ci right 2.423009e-01	k: 4727	n:20000
Cons ci ratio: 2.177764e-02	ci left: 6.115254e-01	ci right 6.250402e-01	k: 12366	n:20000
KS ci ratio: 8.868017e-02	ci left: 8.503968e-02	ci right 9.298028e-02	k: 1779	n:20000
CD1A   20000 perm   4 sec   (5302 perm/sec)   p_kst 8.895000e-02   p_cons 6.183000e-01   p_joint 2.363500e-01

Outputting figure to mutsig2_images.part000000000033/CD1A.4_1008_20000_0.08895_0.6183_0.23635.png
                gene_name: CD1A
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.089 
        ci_ks_bounds_left: 0.085 
       ci_ks_bounds_right: 0.093 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 27 percent done.
CD1D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.522805e-02	ci left: 6.980709e-01	ci right 7.160083e-01	k: 7071	n:10000
Cons ci ratio: 1.686766e-02	ci left: 8.365345e-01	ci right 8.508647e-01	k: 8438	n:10000
KS ci ratio: 3.289058e-02	ci left: 5.770748e-01	ci right 5.964746e-01	k: 5868	n:10000
CD1D   10000 perm   2 sec   (5775 perm/sec)   p_kst 5.868000e-01   p_cons 8.438000e-01   p_joint 7.071000e-01

Outputting figure to mutsig2_images.part000000000033/CD1D.4_1032_10000_0.5868_0.8438_0.7071.png
                gene_name: CD1D
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 29 percent done.
CD1E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.889140e-02	ci left: 1.901300e-01	ci right 2.058463e-01	k: 1979	n:10000
Cons ci ratio: 1.001478e-02	ci left: 9.339228e-01	ci right 9.434196e-01	k: 9388	n:10000
KS ci ratio: 1.189212e-01	ci left: 9.214310e-02	ci right 1.038923e-01	k: 979	n:10000
CD1E   10000 perm   2 sec   (5937 perm/sec)   p_kst 9.790000e-02   p_cons 9.388000e-01   p_joint 1.979000e-01

Joint ci ratio: 5.667917e-02	ci left: 1.875010e-01	ci right 1.984884e-01	k: 3859	n:20000
Cons ci ratio: 7.441813e-03	ci left: 9.292418e-01	ci right 9.362318e-01	k: 18656	n:20000
KS ci ratio: 8.262725e-02	ci left: 9.695524e-02	ci right 1.053611e-01	k: 2022	n:20000
CD1E   20000 perm   4 sec   (5221 perm/sec)   p_kst 1.011000e-01   p_cons 9.328000e-01   p_joint 1.929500e-01

Outputting figure to mutsig2_images.part000000000033/CD1E.4_1191_20000_0.1011_0.9328_0.19295.png
                gene_name: CD1E
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.097 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 31 percent done.
CCNT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.836201e-03	ci left: 9.825290e-01	ci right 9.873825e-01	k: 9851	n:10000
Cons ci ratio: 3.207657e-02	ci left: 5.892161e-01	ci right 6.085262e-01	k: 5989	n:10000
KS ci ratio: 5.850473e-03	ci left: 9.752511e-01	ci right 9.810657e-01	k: 9783	n:10000
CCNT1   10000 perm   2 sec   (5853 perm/sec)   p_kst 9.783000e-01   p_cons 5.989000e-01   p_joint 9.851000e-01

Outputting figure to mutsig2_images.part000000000033/CCNT1.3_2217_10000_0.9783_0.5989_0.9851.png
                gene_name: CCNT1
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 33 percent done.
CCPG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.828377e-02	ci left: 6.482049e-01	ci right 6.669033e-01	k: 6576	n:10000
Cons ci ratio: 1.663040e-02	ci left: 8.403028e-01	ci right 8.544942e-01	k: 8475	n:10000
KS ci ratio: 4.493169e-02	ci left: 4.223619e-01	ci right 4.418776e-01	k: 4321	n:10000
CCPG1   10000 perm   2 sec   (5514 perm/sec)   p_kst 4.321000e-01   p_cons 8.475000e-01   p_joint 6.576000e-01

Outputting figure to mutsig2_images.part000000000033/CCPG1.3_2302_10000_0.4321_0.8475_0.6576.png
                gene_name: CCPG1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 36 percent done.
CCR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.467933e-02	ci left: 5.511066e-01	ci right 5.706579e-01	k: 5609	n:10000
Cons ci ratio: 6.758888e-02	ci left: 2.431184e-01	ci right 2.602265e-01	k: 2516	n:10000
KS ci ratio: 1.439627e-02	ci left: 8.746972e-01	ci right 8.874798e-01	k: 8812	n:10000
CCR1   10000 perm   2 sec   (6295 perm/sec)   p_kst 8.812000e-01   p_cons 2.516000e-01   p_joint 5.609000e-01

Outputting figure to mutsig2_images.part000000000033/CCR1.3_1072_10000_0.8812_0.2516_0.5609.png
                gene_name: CCR1
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 38 percent done.
CCR4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.083495e-02	ci left: 3.633108e-01	ci right 3.823633e-01	k: 3728	n:10000
Cons ci ratio: 3.682802e-02	ci left: 5.212613e-01	ci right 5.409206e-01	k: 5311	n:10000
KS ci ratio: 7.184476e-02	ci left: 2.210904e-01	ci right 2.376675e-01	k: 2293	n:10000
CCR4   10000 perm   2 sec   (6063 perm/sec)   p_kst 2.293000e-01   p_cons 5.311000e-01   p_joint 3.728000e-01

Outputting figure to mutsig2_images.part000000000033/CCR4.3_1087_10000_0.2293_0.5311_0.3728.png
                gene_name: CCR4
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 40 percent done.
CD244
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.059483e-02	ci left: 6.118092e-01	ci right 6.309201e-01	k: 6214	n:10000
Cons ci ratio: 4.392105e-02	ci left: 4.335311e-01	ci right 4.531019e-01	k: 4433	n:10000
KS ci ratio: 2.316878e-02	ci left: 7.323953e-01	ci right 7.496640e-01	k: 7411	n:10000
CD244   10000 perm   2 sec   (6241 perm/sec)   p_kst 7.411000e-01   p_cons 4.433000e-01   p_joint 6.214000e-01

Outputting figure to mutsig2_images.part000000000033/CD244.3_1149_10000_0.7411_0.4433_0.6214.png
                gene_name: CD244
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 42 percent done.
CD248
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.367603e-02	ci left: 7.239092e-01	ci right 7.413551e-01	k: 7327	n:10000
KS ci ratio: 2.721712e-02	ci left: 6.654179e-01	ci right 6.838802e-01	k: 6747	n:10000
CD248   10000 perm   2 sec   (5643 perm/sec)   p_kst 6.747000e-01   p_cons 7.327000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000033/CD248.3_2278_10000_0.6747_0.7327_1.png
                gene_name: CD248
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 44 percent done.
CD2BP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.281715e-02	ci left: 4.461024e-01	ci right 4.657233e-01	k: 4559	n:10000
KS ci ratio: 1.885064e-02	ci left: 8.044048e-01	ci right 8.198129e-01	k: 8122	n:10000
CD2BP2   10000 perm   2 sec   (6218 perm/sec)   p_kst 8.122000e-01   p_cons 4.559000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000033/CD2BP2.3_1050_10000_0.8122_0.4559_1.png
                gene_name: CD2BP2
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 47 percent done.
CD300LG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.167205e-02	ci left: 7.574741e-01	ci right 7.741708e-01	k: 7659	n:10000
KS ci ratio: 3.701324e-02	ci left: 5.187591e-01	ci right 5.384242e-01	k: 5286	n:10000
CD300LG   10000 perm   2 sec   (6137 perm/sec)   p_kst 5.286000e-01   p_cons 7.659000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000033/CD300LG.3_1146_10000_0.5286_0.7659_1.png
                gene_name: CD300LG
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 49 percent done.
CD33
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.504455e-02	ci left: 3.271384e-01	ci right 3.457570e-01	k: 3364	n:10000
Cons ci ratio: 5.013582e-02	ci left: 3.697763e-01	ci right 3.888940e-01	k: 3793	n:10000
KS ci ratio: 5.808866e-02	ci left: 3.037185e-01	ci right 3.219906e-01	k: 3128	n:10000
CD33   10000 perm   2 sec   (5923 perm/sec)   p_kst 3.128000e-01   p_cons 3.793000e-01   p_joint 3.364000e-01

Outputting figure to mutsig2_images.part000000000033/CD33.3_1136_10000_0.3128_0.3793_0.3364.png
                gene_name: CD33
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 51 percent done.
CD37
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.612086e-02	ci left: 2.015594e-01	ci right 2.176102e-01	k: 2095	n:10000
Cons ci ratio: 1.133002e-01	ci left: 1.008116e-01	ci right 1.130184e-01	k: 1068	n:10000
KS ci ratio: 4.433266e-02	ci left: 4.289432e-01	ci right 4.484926e-01	k: 4387	n:10000
CD37   10000 perm   2 sec   (6494 perm/sec)   p_kst 4.387000e-01   p_cons 1.068000e-01   p_joint 2.095000e-01

Joint ci ratio: 6.163978e-02	ci left: 1.629902e-01	ci right 1.734064e-01	k: 3363	n:20000
Cons ci ratio: 7.972081e-02	ci left: 1.035342e-01	ci right 1.121802e-01	k: 2156	n:20000
KS ci ratio: 3.123002e-02	ci left: 4.337036e-01	ci right 4.475137e-01	k: 8812	n:20000
CD37   20000 perm   3 sec   (6050 perm/sec)   p_kst 4.406000e-01   p_cons 1.078000e-01   p_joint 1.681500e-01

Outputting figure to mutsig2_images.part000000000033/CD37.3_878_20000_0.4406_0.1078_0.16815.png
                gene_name: CD37
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 53 percent done.
CD40LG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.141010e-02	ci left: 2.805242e-01	ci right 2.983986e-01	k: 2894	n:10000
Cons ci ratio: 2.269812e-02	ci left: 7.402790e-01	ci right 7.573759e-01	k: 7489	n:10000
KS ci ratio: 1.694391e-01	ci left: 4.648153e-02	ci right 5.518251e-02	k: 507	n:10000
CD40LG   10000 perm   1 sec   (6933 perm/sec)   p_kst 5.070000e-02   p_cons 7.489000e-01   p_joint 2.894000e-01

Joint ci ratio: 6.634702e-02	ci left: 1.436475e-01	ci right 1.535549e-01	k: 2971	n:20000
Cons ci ratio: 1.680158e-02	ci left: 7.250982e-01	ci right 7.374345e-01	k: 14626	n:20000
KS ci ratio: 1.240530e-01	ci left: 4.459306e-02	ci right 5.053936e-02	k: 950	n:20000
CD40LG   20000 perm   3 sec   (6302 perm/sec)   p_kst 4.750000e-02   p_cons 7.313000e-01   p_joint 1.485500e-01

Joint ci ratio: 7.949942e-02	ci left: 7.197865e-02	ci right 7.797064e-02	k: 2248	n:30000
Cons ci ratio: 1.375690e-02	ci left: 7.251386e-01	ci right 7.352168e-01	k: 21906	n:30000
KS ci ratio: 1.007898e-01	ci left: 4.557572e-02	ci right 5.044562e-02	k: 1439	n:30000
CD40LG   30000 perm   5 sec   (6087 perm/sec)   p_kst 4.796667e-02   p_cons 7.302000e-01   p_joint 7.493333e-02

Joint ci ratio: 6.056474e-02	ci left: 9.192158e-02	ci right 9.768740e-02	k: 3791	n:40000
Cons ci ratio: 1.191084e-02	ci left: 7.259217e-01	ci right 7.346449e-01	k: 29212	n:40000
KS ci ratio: 8.750253e-02	ci left: 4.568071e-02	ci right 4.988525e-02	k: 1910	n:40000
CD40LG   40000 perm   7 sec   (5838 perm/sec)   p_kst 4.775000e-02   p_cons 7.303000e-01   p_joint 9.477500e-02

Outputting figure to mutsig2_images.part000000000033/CD40LG.3_806_40000_0.04775_0.7303_0.094775.png
                gene_name: CD40LG
               theta_stop: 0.088 
                    nperm: 40000 
                     p_ks: 0.048 
        ci_ks_bounds_left: 0.046 
       ci_ks_bounds_right: 0.050 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.095 
     ci_joint_bounds_left: 0.092 
    ci_joint_bounds_right: 0.098 

Current progress: 56 percent done.
CCNJL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.918628e-02	ci left: 4.902514e-01	ci right 5.099486e-01	k: 5001	n:10000
Cons ci ratio: 1.670107e-02	ci left: 8.391823e-01	ci right 8.534153e-01	k: 8464	n:10000
KS ci ratio: 1.235153e-01	ci left: 8.582142e-02	ci right 9.721783e-02	k: 914	n:10000
CCNJL   10000 perm   1 sec   (7430 perm/sec)   p_kst 9.140000e-02   p_cons 8.464000e-01   p_joint 5.001000e-01

Joint ci ratio: 3.230759e-02	ci left: 4.170876e-01	ci right 4.308345e-01	k: 8479	n:20000
Cons ci ratio: 1.206424e-02	ci left: 8.356044e-01	ci right 8.457963e-01	k: 16815	n:20000
KS ci ratio: 8.689668e-02	ci left: 8.832299e-02	ci right 9.639598e-02	k: 1846	n:20000
CCNJL   20000 perm   3 sec   (6500 perm/sec)   p_kst 9.230000e-02   p_cons 8.407500e-01   p_joint 4.239500e-01

Outputting figure to mutsig2_images.part000000000033/CCNJL.2_1332_20000_0.0923_0.84075_0.42395.png
                gene_name: CCNJL
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.092 
        ci_ks_bounds_left: 0.088 
       ci_ks_bounds_right: 0.096 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.43 

Current progress: 58 percent done.
CCNK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.549086e-01	ci left: 2.015152e-02	ci right 2.613074e-02	k: 230	n:10000
Cons ci ratio: 9.269452e-02	ci left: 1.446231e-01	ci right 1.587804e-01	k: 1516	n:10000
KS ci ratio: 3.498200e-01	ci left: 1.023265e-02	ci right 1.465817e-02	k: 123	n:10000
CCNK   10000 perm   1 sec   (7124 perm/sec)   p_kst 1.230000e-02   p_cons 1.516000e-01   p_joint 2.300000e-02

Joint ci ratio: 1.804519e-01	ci left: 2.096705e-02	ci right 2.517319e-02	k: 460	n:20000
Cons ci ratio: 6.135495e-02	ci left: 1.642741e-01	ci right 1.747222e-01	k: 3389	n:20000
KS ci ratio: 2.553012e-01	ci left: 1.016235e-02	ci right 1.318213e-02	k: 232	n:20000
CCNK   20000 perm   3 sec   (6250 perm/sec)   p_kst 1.160000e-02   p_cons 1.694500e-01   p_joint 2.300000e-02

Joint ci ratio: 1.464210e-01	ci left: 2.162257e-02	ci right 2.507059e-02	k: 699	n:30000
Cons ci ratio: 5.004896e-02	ci left: 1.655008e-01	ci right 1.740299e-01	k: 5092	n:30000
KS ci ratio: 2.053554e-01	ci left: 1.076700e-02	ci right 1.326218e-02	k: 359	n:30000
CCNK   30000 perm   5 sec   (5934 perm/sec)   p_kst 1.196667e-02   p_cons 1.697333e-01   p_joint 2.330000e-02

Joint ci ratio: 1.273883e-01	ci left: 2.165006e-02	ci right 2.461973e-02	k: 924	n:40000
Cons ci ratio: 4.347751e-02	ci left: 1.652152e-01	ci right 1.725829e-01	k: 6755	n:40000
KS ci ratio: 1.787886e-01	ci left: 1.081261e-02	ci right 1.295913e-02	k: 474	n:40000
CCNK   40000 perm   7 sec   (5746 perm/sec)   p_kst 1.185000e-02   p_cons 1.688750e-01   p_joint 2.310000e-02

Joint ci ratio: 1.144602e-01	ci left: 2.160661e-02	ci right 2.424918e-02	k: 1145	n:50000
Cons ci ratio: 3.897362e-02	ci left: 1.649903e-01	ci right 1.715683e-01	k: 8413	n:50000
KS ci ratio: 1.608416e-01	ci left: 1.079509e-02	ci right 1.270222e-02	k: 586	n:50000
CCNK   50000 perm   9 sec   (5575 perm/sec)   p_kst 1.172000e-02   p_cons 1.682600e-01   p_joint 2.290000e-02

Joint ci ratio: 1.038021e-01	ci left: 2.201024e-02	ci right 2.443618e-02	k: 1392	n:60000
Cons ci ratio: 3.570726e-02	ci left: 1.642717e-01	ci right 1.702606e-01	k: 10035	n:60000
KS ci ratio: 1.461367e-01	ci left: 1.098343e-02	ci right 1.273094e-02	k: 710	n:60000
CCNK   60000 perm   11 sec   (5431 perm/sec)   p_kst 1.183333e-02   p_cons 1.672500e-01   p_joint 2.320000e-02

Joint ci ratio: 9.556675e-02	ci left: 2.234859e-02	ci right 2.460544e-02	k: 1642	n:70000
Cons ci ratio: 3.306135e-02	ci left: 1.644708e-01	ci right 1.700140e-01	k: 11706	n:70000
KS ci ratio: 1.352552e-01	ci left: 1.105461e-02	ci right 1.267194e-02	k: 829	n:70000
CCNK   70000 perm   13 sec   (5300 perm/sec)   p_kst 1.184286e-02   p_cons 1.672286e-01   p_joint 2.345714e-02

Joint ci ratio: 8.924174e-02	ci left: 2.249802e-02	ci right 2.461173e-02	k: 1883	n:80000
Cons ci ratio: 3.088648e-02	ci left: 1.650052e-01	ci right 1.701940e-01	k: 13407	n:80000
KS ci ratio: 1.263561e-01	ci left: 1.113586e-02	ci right 1.264985e-02	k: 950	n:80000
CCNK   80000 perm   15 sec   (5194 perm/sec)   p_kst 1.187500e-02   p_cons 1.675875e-01   p_joint 2.353750e-02

Joint ci ratio: 8.420921e-02	ci left: 2.252014e-02	ci right 2.451073e-02	k: 2115	n:90000
Cons ci ratio: 2.909690e-02	ci left: 1.653748e-01	ci right 1.702688e-01	k: 15103	n:90000
KS ci ratio: 1.191791e-01	ci left: 1.116942e-02	ci right 1.259563e-02	k: 1068	n:90000
CCNK   90000 perm   18 sec   (5092 perm/sec)   p_kst 1.186667e-02   p_cons 1.678111e-01   p_joint 2.350000e-02

Joint ci ratio: 7.964732e-02	ci left: 2.270721e-02	ci right 2.460056e-02	k: 2364	n:100000
Cons ci ratio: 2.763465e-02	ci left: 1.651902e-01	ci right 1.698291e-01	k: 16750	n:100000
KS ci ratio: 1.125741e-01	ci left: 1.130515e-02	ci right 1.266337e-02	k: 1197	n:100000
CCNK   100000 perm   20 sec   (4993 perm/sec)   p_kst 1.197000e-02   p_cons 1.675000e-01   p_joint 2.364000e-02

Joint ci ratio: 7.600814e-02	ci left: 2.271097e-02	ci right 2.451427e-02	k: 2596	n:110000
Cons ci ratio: 2.636072e-02	ci left: 1.651709e-01	ci right 1.695921e-01	k: 18411	n:110000
KS ci ratio: 1.076166e-01	ci left: 1.127639e-02	ci right 1.256772e-02	k: 1310	n:110000
CCNK   110000 perm   22 sec   (4901 perm/sec)   p_kst 1.190909e-02   p_cons 1.673727e-01   p_joint 2.360000e-02

Joint ci ratio: 7.283933e-02	ci left: 2.270757e-02	ci right 2.443223e-02	k: 2827	n:120000
Cons ci ratio: 2.521573e-02	ci left: 1.655155e-01	ci right 1.697506e-01	k: 20115	n:120000
KS ci ratio: 1.033714e-01	ci left: 1.122916e-02	ci right 1.246126e-02	k: 1420	n:120000
CCNK   120000 perm   25 sec   (4812 perm/sec)   p_kst 1.183333e-02   p_cons 1.676250e-01   p_joint 2.355833e-02

Joint ci ratio: 6.989616e-02	ci left: 2.279674e-02	ci right 2.445537e-02	k: 3070	n:130000
Cons ci ratio: 2.420004e-02	ci left: 1.659024e-01	ci right 1.699740e-01	k: 21831	n:130000
KS ci ratio: 9.929705e-02	ci left: 1.125758e-02	ci right 1.244127e-02	k: 1539	n:130000
CCNK   130000 perm   28 sec   (4723 perm/sec)   p_kst 1.183846e-02   p_cons 1.679308e-01   p_joint 2.361538e-02

Outputting figure to mutsig2_images.part000000000033/CCNK.2_1783_130000_0.011838_0.16793_0.023615.png
                gene_name: CCNK
               theta_stop: 0.099 
                    nperm: 130000 
                     p_ks: 0.012 
        ci_ks_bounds_left: 0.011 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.024 
     ci_joint_bounds_left: 0.023 
    ci_joint_bounds_right: 0.024 

Current progress: 60 percent done.
CCNL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.564171e-02	ci left: 2.036295e-01	ci right 2.197388e-01	k: 2116	n:10000
Cons ci ratio: 5.136070e-02	ci left: 3.585374e-01	ci right 3.775395e-01	k: 3680	n:10000
KS ci ratio: 3.165721e-01	ci left: 1.270967e-02	ci right 1.757875e-02	k: 150	n:10000
CCNL2   10000 perm   1 sec   (7305 perm/sec)   p_kst 1.500000e-02   p_cons 3.680000e-01   p_joint 2.116000e-01

Joint ci ratio: 6.519175e-02	ci left: 1.480859e-01	ci right 1.581151e-01	k: 3061	n:20000
Cons ci ratio: 3.627835e-02	ci left: 3.618587e-01	ci right 3.752795e-01	k: 7371	n:20000
KS ci ratio: 2.321934e-01	ci left: 1.241764e-02	ci right 1.572585e-02	k: 280	n:20000
CCNL2   20000 perm   3 sec   (6509 perm/sec)   p_kst 1.400000e-02   p_cons 3.685500e-01   p_joint 1.530500e-01

Joint ci ratio: 5.393108e-02	ci left: 1.456802e-01	ci right 1.537878e-01	k: 4491	n:30000
Cons ci ratio: 2.962959e-02	ci left: 3.629711e-01	ci right 3.739211e-01	k: 11053	n:30000
KS ci ratio: 1.913204e-01	ci left: 1.247871e-02	ci right 1.515000e-02	k: 413	n:30000
CCNL2   30000 perm   5 sec   (6188 perm/sec)   p_kst 1.376667e-02   p_cons 3.684333e-01   p_joint 1.497000e-01

Joint ci ratio: 5.957192e-02	ci left: 9.475779e-02	ci right 1.006008e-01	k: 3906	n:40000
Cons ci ratio: 2.551267e-02	ci left: 3.663876e-01	ci right 3.758811e-01	k: 14845	n:40000
KS ci ratio: 1.637448e-01	ci left: 1.296745e-02	ci right 1.530387e-02	k: 564	n:40000
CCNL2   40000 perm   7 sec   (5972 perm/sec)   p_kst 1.410000e-02   p_cons 3.711250e-01   p_joint 9.765000e-02

Joint ci ratio: 5.138423e-02	ci left: 1.015746e-01	ci right 1.069514e-01	k: 5212	n:50000
Cons ci ratio: 2.279723e-02	ci left: 3.673420e-01	ci right 3.758330e-01	k: 18579	n:50000
KS ci ratio: 1.466954e-01	ci left: 1.304628e-02	ci right 1.513069e-02	k: 703	n:50000
CCNL2   50000 perm   9 sec   (5804 perm/sec)   p_kst 1.406000e-02   p_cons 3.715800e-01   p_joint 1.042400e-01

Joint ci ratio: 4.688882e-02	ci left: 1.018817e-01	ci right 1.067900e-01	k: 6259	n:60000
Cons ci ratio: 2.083471e-02	ci left: 3.671826e-01	ci right 3.749299e-01	k: 22263	n:60000
KS ci ratio: 1.337376e-01	ci left: 1.317182e-02	ci right 1.507560e-02	k: 846	n:60000
CCNL2   60000 perm   11 sec   (5664 perm/sec)   p_kst 1.410000e-02   p_cons 3.710500e-01   p_joint 1.043167e-01

Joint ci ratio: 4.328613e-02	ci left: 1.025968e-01	ci right 1.071503e-01	k: 7340	n:70000
Cons ci ratio: 1.928722e-02	ci left: 3.675195e-01	ci right 3.746912e-01	k: 25977	n:70000
KS ci ratio: 1.229471e-01	ci left: 1.343353e-02	ci right 1.520707e-02	k: 1001	n:70000
CCNL2   70000 perm   13 sec   (5537 perm/sec)   p_kst 1.430000e-02   p_cons 3.711000e-01   p_joint 1.048571e-01

Joint ci ratio: 4.044397e-02	ci left: 1.029582e-01	ci right 1.072205e-01	k: 8406	n:80000
Cons ci ratio: 1.805998e-02	ci left: 3.672767e-01	ci right 3.739827e-01	k: 29650	n:80000
KS ci ratio: 1.153722e-01	ci left: 1.340368e-02	ci right 1.505682e-02	k: 1137	n:80000
CCNL2   80000 perm   15 sec   (5415 perm/sec)   p_kst 1.421250e-02   p_cons 3.706250e-01   p_joint 1.050750e-01

Joint ci ratio: 3.629968e-02	ci left: 1.126250e-01	ci right 1.167999e-01	k: 10323	n:90000
Cons ci ratio: 1.700134e-02	ci left: 3.681754e-01	ci right 3.744996e-01	k: 33420	n:90000
KS ci ratio: 1.090444e-01	ci left: 1.338310e-02	ci right 1.493734e-02	k: 1273	n:90000
CCNL2   90000 perm   17 sec   (5312 perm/sec)   p_kst 1.414444e-02   p_cons 3.713333e-01   p_joint 1.147000e-01

Joint ci ratio: 8.137310e-02	ci left: 2.175630e-02	ci right 2.361152e-02	k: 2267	n:100000
Cons ci ratio: 1.554851e-02	ci left: 3.855772e-01	ci right 3.916293e-01	k: 38860	n:100000
KS ci ratio: 1.036924e-01	ci left: 1.335887e-02	ci right 1.482951e-02	k: 1408	n:100000
CCNL2   100000 perm   19 sec   (5208 perm/sec)   p_kst 1.408000e-02   p_cons 3.886000e-01   p_joint 2.267000e-02

Joint ci ratio: 2.652876e-02	ci left: 1.634166e-01	ci right 1.678192e-01	k: 18217	n:110000
Cons ci ratio: 1.481163e-02	ci left: 3.861446e-01	ci right 3.919158e-01	k: 42793	n:110000
KS ci ratio: 9.918871e-02	ci left: 1.330511e-02	ci right 1.470250e-02	k: 1539	n:110000
CCNL2   110000 perm   22 sec   (5114 perm/sec)   p_kst 1.399091e-02   p_cons 3.890273e-01   p_joint 1.656091e-01

Outputting figure to mutsig2_images.part000000000033/CCNL2.2_1633_110000_0.013991_0.38903_0.16561.png
                gene_name: CCNL2
               theta_stop: 0.099 
                    nperm: 110000 
                     p_ks: 0.014 
        ci_ks_bounds_left: 0.013 
       ci_ks_bounds_right: 0.015 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 62 percent done.
CCR5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.857217e-02	ci left: 8.089748e-01	ci right 8.242403e-01	k: 8167	n:10000
Cons ci ratio: 1.577252e-02	ci left: 8.537584e-01	ci right 8.674308e-01	k: 8607	n:10000
KS ci ratio: 5.579244e-02	ci left: 3.211817e-01	ci right 3.397172e-01	k: 3304	n:10000
CCR5   10000 perm   1 sec   (7548 perm/sec)   p_kst 3.304000e-01   p_cons 8.607000e-01   p_joint 8.167000e-01

Outputting figure to mutsig2_images.part000000000033/CCR5.2_1063_10000_0.3304_0.8607_0.8167.png
                gene_name: CCR5
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 64 percent done.
CCR6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.083156e-01	ci left: 1.094933e-01	ci right 1.221314e-01	k: 1157	n:10000
Cons ci ratio: 2.191527e-01	ci left: 2.759554e-02	ci right 3.448123e-02	k: 309	n:10000
KS ci ratio: 4.007393e-02	ci left: 4.790570e-01	ci right 4.987494e-01	k: 4889	n:10000
CCR6   10000 perm   1 sec   (7525 perm/sec)   p_kst 4.889000e-01   p_cons 3.090000e-02   p_joint 1.157000e-01

Joint ci ratio: 1.297411e-01	ci left: 4.081147e-02	ci right 4.652216e-02	k: 872	n:20000
Cons ci ratio: 1.591209e-01	ci left: 2.710248e-02	ci right 3.183564e-02	k: 588	n:20000
KS ci ratio: 2.845237e-02	ci left: 4.799502e-01	ci right 4.938536e-01	k: 9738	n:20000
CCR6   20000 perm   3 sec   (6619 perm/sec)   p_kst 4.869000e-01   p_cons 2.940000e-02   p_joint 4.360000e-02

Joint ci ratio: 1.127958e-01	ci left: 3.651309e-02	ci right 4.091016e-02	k: 1160	n:30000
Cons ci ratio: 1.283227e-01	ci left: 2.822778e-02	ci right 3.213057e-02	k: 904	n:30000
KS ci ratio: 2.319316e-02	ci left: 4.820619e-01	ci right 4.934072e-01	k: 14632	n:30000
CCR6   30000 perm   5 sec   (6291 perm/sec)   p_kst 4.877333e-01   p_cons 3.013333e-02   p_joint 3.866667e-02

Joint ci ratio: 9.389929e-02	ci left: 3.978626e-02	ci right 4.373062e-02	k: 1669	n:40000
Cons ci ratio: 1.127141e-01	ci left: 2.769335e-02	ci right 3.102544e-02	k: 1173	n:40000
KS ci ratio: 2.009751e-02	ci left: 4.825402e-01	ci right 4.923616e-01	k: 19498	n:40000
CCR6   40000 perm   7 sec   (6064 perm/sec)   p_kst 4.874500e-01   p_cons 2.932500e-02   p_joint 4.172500e-02

Joint ci ratio: 8.382924e-02	ci left: 4.014084e-02	ci right 4.367260e-02	k: 2094	n:50000
Cons ci ratio: 1.009389e-01	ci left: 2.780014e-02	ci right 3.077485e-02	k: 1463	n:50000
KS ci ratio: 1.793099e-02	ci left: 4.843093e-01	ci right 4.930920e-01	k: 24435	n:50000
CCR6   50000 perm   9 sec   (5873 perm/sec)   p_kst 4.887000e-01   p_cons 2.926000e-02   p_joint 4.188000e-02

Joint ci ratio: 7.625668e-02	ci left: 4.057245e-02	ci right 4.380535e-02	k: 2530	n:60000
Cons ci ratio: 9.208492e-02	ci left: 2.796505e-02	ci right 3.068074e-02	k: 1758	n:60000
KS ci ratio: 1.633714e-02	ci left: 4.856590e-01	ci right 4.936753e-01	k: 29380	n:60000
CCR6   60000 perm   10 sec   (5715 perm/sec)   p_kst 4.896667e-01   p_cons 2.930000e-02   p_joint 4.216667e-02

Outputting figure to mutsig2_images.part000000000033/CCR6.2_1133_60000_0.48967_0.0293_0.042167.png
                gene_name: CCR6
               theta_stop: 0.092 
                    nperm: 60000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.029 
      ci_cons_bounds_left: 0.028 
     ci_cons_bounds_right: 0.031 
                  p_joint: 0.042 
     ci_joint_bounds_left: 0.041 
    ci_joint_bounds_right: 0.044 

Current progress: 67 percent done.
CCRL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.389437e-02	ci left: 4.338303e-01	ci right 4.534025e-01	k: 4436	n:10000
KS ci ratio: 3.115659e-02	ci left: 6.031711e-01	ci right 6.223632e-01	k: 6128	n:10000
CCRL1   10000 perm   1 sec   (7487 perm/sec)   p_kst 6.128000e-01   p_cons 4.436000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000033/CCRL1.2_1057_10000_0.6128_0.4436_1.png
                gene_name: CCRL1
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 69 percent done.
CCT7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.129460e-02	ci left: 6.010623e-01	ci right 6.202732e-01	k: 6107	n:10000
KS ci ratio: 1.226434e-02	ci left: 9.051459e-01	ci right 9.164135e-01	k: 9109	n:10000
CCT7   10000 perm   1 sec   (7441 perm/sec)   p_kst 9.109000e-01   p_cons 6.107000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000033/CCT7.2_1680_10000_0.9109_0.6107_1.png
                gene_name: CCT7
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
CD14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.186767e-02	ci left: 9.104942e-01	ci right 9.214620e-01	k: 9161	n:10000
Cons ci ratio: 2.150284e-02	ci left: 7.603080e-01	ci right 7.769353e-01	k: 7687	n:10000
KS ci ratio: 6.000711e-02	ci left: 2.900365e-01	ci right 3.080807e-01	k: 2990	n:10000
CD14   10000 perm   1 sec   (7285 perm/sec)   p_kst 2.990000e-01   p_cons 7.687000e-01   p_joint 9.161000e-01

Outputting figure to mutsig2_images.part000000000033/CD14.2_1136_10000_0.299_0.7687_0.9161.png
                gene_name: CD14
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 73 percent done.
CD177
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.278258e-02	ci left: 7.388637e-01	ci right 7.559919e-01	k: 7475	n:10000
KS ci ratio: 3.082280e-02	ci left: 6.082933e-01	ci right 6.274380e-01	k: 6179	n:10000
CD177   10000 perm   1 sec   (7285 perm/sec)   p_kst 6.179000e-01   p_cons 7.475000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000033/CD177.2_1350_10000_0.6179_0.7475_1.png
                gene_name: CD177
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
CD180
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.329427e-02	ci left: 8.907739e-01	ci right 9.027938e-01	k: 8969	n:10000
Cons ci ratio: 1.695711e-02	ci left: 8.351090e-01	ci right 8.494910e-01	k: 8424	n:10000
KS ci ratio: 5.959467e-02	ci left: 2.929109e-01	ci right 3.110046e-01	k: 3019	n:10000
CD180   10000 perm   1 sec   (6834 perm/sec)   p_kst 3.019000e-01   p_cons 8.424000e-01   p_joint 8.969000e-01

Outputting figure to mutsig2_images.part000000000033/CD180.2_1998_10000_0.3019_0.8424_0.8969.png
                gene_name: CD180
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 78 percent done.
CD19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.616904e-02	ci left: 6.825442e-01	ci right 7.007441e-01	k: 6917	n:10000
Cons ci ratio: 1.117529e-02	ci left: 9.195597e-01	ci right 9.299912e-01	k: 9249	n:10000
KS ci ratio: 1.410433e-01	ci left: 6.662205e-02	ci right 7.682914e-02	k: 716	n:10000
CD19   10000 perm   1 sec   (6951 perm/sec)   p_kst 7.160000e-02   p_cons 9.249000e-01   p_joint 6.917000e-01

Joint ci ratio: 3.267405e-02	ci left: 4.116005e-01	ci right 4.253232e-01	k: 8369	n:20000
Cons ci ratio: 8.055540e-03	ci left: 9.183500e-01	ci right 9.258268e-01	k: 18443	n:20000
KS ci ratio: 1.013035e-01	ci left: 6.611102e-02	ci right 7.321471e-02	k: 1392	n:20000
CD19   20000 perm   3 sec   (6178 perm/sec)   p_kst 6.960000e-02   p_cons 9.221500e-01   p_joint 4.184500e-01

Joint ci ratio: 4.330934e-02	ci left: 2.098332e-01	ci right 2.191555e-01	k: 6434	n:30000
Cons ci ratio: 6.629354e-03	ci left: 9.178901e-01	ci right 9.240281e-01	k: 27630	n:30000
KS ci ratio: 8.209335e-02	ci left: 6.772640e-02	ci right 7.355708e-02	k: 2118	n:30000
CD19   30000 perm   5 sec   (5897 perm/sec)   p_kst 7.060000e-02   p_cons 9.210000e-01   p_joint 2.144667e-01

Outputting figure to mutsig2_images.part000000000033/CD19.2_1730_30000_0.0706_0.921_0.21447.png
                gene_name: CD19
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.071 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.074 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 80 percent done.
CD200R1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.219262e-02	ci left: 4.533887e-01	ci right 4.730328e-01	k: 4632	n:10000
Cons ci ratio: 9.913811e-02	ci left: 1.284572e-01	ci right 1.419561e-01	k: 1351	n:10000
KS ci ratio: 7.319143e-02	ci left: 2.146757e-01	ci right 2.310860e-01	k: 2228	n:10000
CD200R1L   10000 perm   1 sec   (7853 perm/sec)   p_kst 2.228000e-01   p_cons 1.351000e-01   p_joint 4.632000e-01

Outputting figure to mutsig2_images.part000000000033/CD200R1L.2_840_10000_0.2228_0.1351_0.4632.png
                gene_name: CD200R1L
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 82 percent done.
CD209
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.130776e-02	ci left: 6.008614e-01	ci right 6.200742e-01	k: 6105	n:10000
Cons ci ratio: 4.417103e-02	ci left: 4.307383e-01	ci right 4.502963e-01	k: 4405	n:10000
KS ci ratio: 3.295844e-02	ci left: 5.760717e-01	ci right 5.954783e-01	k: 5858	n:10000
CD209   10000 perm   1 sec   (7409 perm/sec)   p_kst 5.858000e-01   p_cons 4.405000e-01   p_joint 6.105000e-01

Outputting figure to mutsig2_images.part000000000033/CD209.2_1243_10000_0.5858_0.4405_0.6105.png
                gene_name: CD209
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 84 percent done.
CD276
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.305411e-02	ci left: 7.343154e-01	ci right 7.515429e-01	k: 7430	n:10000
KS ci ratio: 1.842942e-02	ci left: 8.113112e-01	ci right 8.265025e-01	k: 8190	n:10000
CD276   10000 perm   1 sec   (7184 perm/sec)   p_kst 8.190000e-01   p_cons 7.430000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000033/CD276.2_1641_10000_0.819_0.743_1.png
                gene_name: CD276
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
CD300LB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.211887e-02	ci left: 7.499869e-01	ci right 7.668623e-01	k: 7585	n:10000
Cons ci ratio: 2.957621e-02	ci left: 6.276875e-01	ci right 6.466326e-01	k: 6372	n:10000
KS ci ratio: 1.563421e-02	ci left: 8.559009e-01	ci right 8.694871e-01	k: 8628	n:10000
CD300LB   10000 perm   1 sec   (7607 perm/sec)   p_kst 8.628000e-01   p_cons 6.372000e-01   p_joint 7.585000e-01

Outputting figure to mutsig2_images.part000000000033/CD300LB.2_733_10000_0.8628_0.6372_0.7585.png
                gene_name: CD300LB
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 89 percent done.
CD34
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.428612e-02	ci left: 8.763339e-01	ci right 8.890423e-01	k: 8828	n:10000
Cons ci ratio: 3.521033e-02	ci left: 5.435919e-01	ci right 5.631770e-01	k: 5534	n:10000
KS ci ratio: 2.013206e-02	ci left: 7.832008e-01	ci right 7.992292e-01	k: 7913	n:10000
CD34   10000 perm   1 sec   (7352 perm/sec)   p_kst 7.913000e-01   p_cons 5.534000e-01   p_joint 8.828000e-01

Outputting figure to mutsig2_images.part000000000033/CD34.2_1209_10000_0.7913_0.5534_0.8828.png
                gene_name: CD34
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 91 percent done.
CD38
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.259546e-01	ci left: 8.271234e-02	ci right 9.392883e-02	k: 882	n:10000
Cons ci ratio: 1.525972e-01	ci left: 5.715872e-02	ci right 6.669845e-02	k: 618	n:10000
KS ci ratio: 3.481326e-02	ci left: 5.492026e-01	ci right 5.687630e-01	k: 5590	n:10000
CD38   10000 perm   1 sec   (7781 perm/sec)   p_kst 5.590000e-01   p_cons 6.180000e-02   p_joint 8.820000e-02

Joint ci ratio: 8.838073e-02	ci left: 8.557862e-02	ci right 9.354118e-02	k: 1790	n:20000
Cons ci ratio: 1.105463e-01	ci left: 5.587115e-02	ci right 6.245774e-02	k: 1182	n:20000
KS ci ratio: 2.469322e-02	ci left: 5.505835e-01	ci right 5.643998e-01	k: 11150	n:20000
CD38   20000 perm   3 sec   (6685 perm/sec)   p_kst 5.575000e-01   p_cons 5.910000e-02   p_joint 8.950000e-02

Joint ci ratio: 7.782843e-02	ci left: 7.492424e-02	ci right 8.102446e-02	k: 2338	n:30000
Cons ci ratio: 8.987175e-02	ci left: 5.694711e-02	ci right 6.233856e-02	k: 1788	n:30000
KS ci ratio: 2.009706e-02	ci left: 5.534596e-01	ci right 5.647290e-01	k: 16773	n:30000
CD38   30000 perm   5 sec   (6377 perm/sec)   p_kst 5.591000e-01   p_cons 5.960000e-02   p_joint 7.793333e-02

Outputting figure to mutsig2_images.part000000000033/CD38.2_935_30000_0.5591_0.0596_0.077933.png
                gene_name: CD38
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.060 
      ci_cons_bounds_left: 0.057 
     ci_cons_bounds_right: 0.062 
                  p_joint: 0.078 
     ci_joint_bounds_left: 0.075 
    ci_joint_bounds_right: 0.081 

Current progress: 93 percent done.
CD40
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.327272e-02	ci left: 8.910815e-01	ci right 9.030861e-01	k: 8972	n:10000
Cons ci ratio: 3.049091e-02	ci left: 6.134166e-01	ci right 6.325117e-01	k: 6230	n:10000
KS ci ratio: 3.867250e-02	ci left: 4.968503e-01	ci right 5.165458e-01	k: 5067	n:10000
CD40   10000 perm   1 sec   (7418 perm/sec)   p_kst 5.067000e-01   p_cons 6.230000e-01   p_joint 8.972000e-01

Outputting figure to mutsig2_images.part000000000033/CD40.2_870_10000_0.5067_0.623_0.8972.png
                gene_name: CD40
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 96 percent done.
CD46
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.746117e-02	ci left: 5.127548e-01	ci right 5.324320e-01	k: 5226	n:10000
Cons ci ratio: 3.375935e-02	ci left: 5.643380e-01	ci right 5.838188e-01	k: 5741	n:10000
KS ci ratio: 8.827696e-02	ci left: 1.573805e-01	ci right 1.720154e-01	k: 1646	n:10000
CD46   10000 perm   1 sec   (7485 perm/sec)   p_kst 1.646000e-01   p_cons 5.741000e-01   p_joint 5.226000e-01

Outputting figure to mutsig2_images.part000000000033/CD46.2_1312_10000_0.1646_0.5741_0.5226.png
                gene_name: CD46
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 98 percent done.
CD47
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.713756e-03	ci left: 9.891692e-01	ci right 9.929363e-01	k: 9912	n:10000
Cons ci ratio: 2.812068e-02	ci left: 6.508212e-01	ci right 6.694854e-01	k: 6602	n:10000
KS ci ratio: 3.292450e-02	ci left: 5.765733e-01	ci right 5.959764e-01	k: 5863	n:10000
CD47   10000 perm   1 sec   (7456 perm/sec)   p_kst 5.863000e-01   p_cons 6.602000e-01   p_joint 9.912000e-01

Outputting figure to mutsig2_images.part000000000033/CD47.2_1020_10000_0.5863_0.6602_0.9912.png
                gene_name: CD47
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000033
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 33 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1552>
Subject: Job 8003949: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1552>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000034> was used as the working directory.
Started at Sun Nov 11 15:04:33 2012
Results reported at Sun Nov 11 15:18:00 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000034.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000034.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 34  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000034.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    925.14 sec.
    Max Memory :      4760 MB
    Max Swap   :      7075 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
34
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 34
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 34: processing genes 2987 - 3076
Calculating significance of each gene.
Using projection method.
2987	CD48	1
2988	CD5	1
2989	CD52	1
2990	CD53	1
2991	CD55	6.111716e-01
2992	CD58	2.791322e-01
2993	CD59	1
2994	CD5L	9.279595e-05
2995	CD6	6.905364e-01
2996	CD63	1
2997	CD68	6.886473e-01
2998	CD69	1
2999	CD7	2.762360e-01
3000/18094 3000	CD70	1
3001	CD72	1
3002	CD74	1
3003	CD79A	3.563729e-01
3004	CD79B	1
3005	CD80	1.685828e-01
3006	CD81	2.115785e-01
3007	CD82	7.007847e-01
3008	CD83	5.501673e-01
3009	CD84	6.834545e-01
3010	CD86	8.836036e-02
3011	CD8A	1.125624e-01
3012	CD8B	1
3013	CD9	5.803502e-01
3014	CD93	4.900628e-01
3015	CD96	3.723577e-01
3016	CD97	1
3017	CD99	1.204937e-01
3018	CD99L2	2.796677e-01
3019	CDA	3.381165e-01
3020	CDADC1	5.825703e-01
3021	CDAN1	8.790346e-01
3022	CDC123	7.901187e-01
3023	CDC14A	8.818481e-01
3024	CDC14B	5.091499e-01
3025	CDC16	8.937116e-01
3026	CDC20	8.070799e-01
3027	CDC20B	4.397156e-01
3028	CDC23	1
3029	CDC25A	1
3030	CDC25B	4.762055e-01
3031	CDC25C	8.117058e-01
3032	CDC26	1
3033	CDC27	1
3034	CDC34	1
3035	CDC37	4.849526e-01
3036	CDC37L1	1
3037	CDC40	1
3038	CDC42	6.318054e-01
3039	CDC42BPA	5.590691e-01
3040	CDC42BPB	1
3041	CDC42BPG	9.378923e-01
3042	CDC42EP1	6.356350e-01
3043	CDC42EP2	1
3044	CDC42EP3	5.582201e-01
3045	CDC42EP4	1.197689e-01
3046	CDC42SE1	2.905234e-01
3047	CDC42SE2	1
3048	CDC45	1
3049	CDC5L	9.684169e-01
3050	CDC6	1.913445e-01
3051	CDC7	2.885343e-01
3052	CDC73	7.328163e-01
3053	CDCA2	9.029730e-01
3054	CDCA3	1
3055	CDCA4	1
3056	CDCA5	3.665174e-01
3057	CDCA7	4.698900e-01
3058	CDCA7L	5.880529e-01
3059	CDCA8	5.945663e-01
3060	CDCP1	1
3061	CDCP2	6.438163e-02
3062	CDH1	6.891356e-01
3063	CDH10	6.219209e-02
3064	CDH11	9.004514e-01
3065	CDH12	1.570707e-01
3066	CDH13	4.417382e-01
3067	CDH15	6.728255e-01
3068	CDH16	1
3069	CDH17	1
3070	CDH18	7.423908e-01
3071	CDH19	1
3072	CDH2	1.050021e-02
3073	CDH20	5.495120e-04
3074	CDH22	1
3075	CDH23	9.999939e-01
3076	CDH24	4.570296e-01
Done

Running MutSig 2:
Scatter job 34: processing genes 2987 - 3076
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CDH10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.950272e-02	ci left: 7.936464e-01	ci right 8.093775e-01	k: 8016	n:10000
Cons ci ratio: 5.860597e-02	ci left: 2.999501e-01	ci right 3.181613e-01	k: 3090	n:10000
KS ci ratio: 1.596919e-02	ci left: 8.506986e-01	ci right 8.644924e-01	k: 8577	n:10000
CDH10   10000 perm   3 sec   (3190 perm/sec)   p_kst 8.577000e-01   p_cons 3.090000e-01   p_joint 8.016000e-01

Outputting figure to mutsig2_images.part000000000034/CDH10.36_2411_10000_0.8577_0.309_0.8016.png
                gene_name: CDH10
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 2 percent done.
CDH18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.533769e-02	ci left: 6.962555e-01	ci right 7.142248e-01	k: 7053	n:10000
Cons ci ratio: 1.467656e-02	ci left: 8.705050e-01	ci right 8.834745e-01	k: 8771	n:10000
KS ci ratio: 3.460197e-02	ci left: 5.522089e-01	ci right 5.717549e-01	k: 5620	n:10000
CDH18   10000 perm   3 sec   (3779 perm/sec)   p_kst 5.620000e-01   p_cons 8.771000e-01   p_joint 7.053000e-01

Outputting figure to mutsig2_images.part000000000034/CDH18.27_2417_10000_0.562_0.8771_0.7053.png
                gene_name: CDH18
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.71 

Current progress: 4 percent done.
CDH12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.003467e-01	ci left: 4.581663e-03	ci right 7.716529e-03	k: 60	n:10000
Cons ci ratio: 2.709509e-01	ci left: 1.771967e-02	ci right 2.336449e-02	k: 204	n:10000
KS ci ratio: 1.487901e-01	ci left: 6.005239e-02	ci right 6.980294e-02	k: 648	n:10000
CDH12   10000 perm   3 sec   (3687 perm/sec)   p_kst 6.480000e-02   p_cons 2.040000e-02   p_joint 6.000000e-03

Joint ci ratio: 2.073850e-01	ci left: 1.572813e-02	ci right 1.941403e-02	k: 350	n:20000
Cons ci ratio: 2.098322e-01	ci left: 1.534872e-02	ci right 1.899360e-02	k: 342	n:20000
KS ci ratio: 1.052995e-01	ci left: 6.137797e-02	ci right 6.824922e-02	k: 1295	n:20000
CDH12   20000 perm   6 sec   (3237 perm/sec)   p_kst 6.475000e-02   p_cons 1.710000e-02   p_joint 1.750000e-02

Joint ci ratio: 1.767358e-01	ci left: 1.470612e-02	ci right 1.758868e-02	k: 483	n:30000
Cons ci ratio: 1.426081e-01	ci left: 2.281229e-02	ci right 2.634727e-02	k: 736	n:30000
KS ci ratio: 8.259776e-02	ci left: 6.694170e-02	ci right 7.274194e-02	k: 2094	n:30000
CDH12   30000 perm   10 sec   (3128 perm/sec)   p_kst 6.980000e-02   p_cons 2.453333e-02   p_joint 1.610000e-02

Joint ci ratio: 1.466451e-01	ci left: 1.626171e-02	ci right 1.885900e-02	k: 701	n:40000
Cons ci ratio: 1.233527e-01	ci left: 2.310407e-02	ci right 2.616548e-02	k: 984	n:40000
KS ci ratio: 7.100508e-02	ci left: 6.828057e-02	ci right 7.333195e-02	k: 2831	n:40000
CDH12   40000 perm   13 sec   (3081 perm/sec)   p_kst 7.077500e-02   p_cons 2.460000e-02   p_joint 1.752500e-02

Joint ci ratio: 9.726944e-02	ci left: 2.992769e-02	ci right 3.300703e-02	k: 1572	n:50000
Cons ci ratio: 1.099759e-01	ci left: 2.341559e-02	ci right 2.615996e-02	k: 1238	n:50000
KS ci ratio: 6.324981e-02	ci left: 6.907913e-02	ci right 7.361079e-02	k: 3566	n:50000
CDH12   50000 perm   17 sec   (3030 perm/sec)   p_kst 7.132000e-02   p_cons 2.476000e-02   p_joint 3.144000e-02

Joint ci ratio: 1.320865e-01	ci left: 1.351033e-02	ci right 1.543705e-02	k: 867	n:60000
Cons ci ratio: 1.169407e-01	ci left: 1.730729e-02	ci right 1.947299e-02	k: 1102	n:60000
KS ci ratio: 5.896759e-02	ci left: 6.657356e-02	ci right 7.063495e-02	k: 4115	n:60000
CDH12   60000 perm   20 sec   (2983 perm/sec)   p_kst 6.858333e-02   p_cons 1.836667e-02   p_joint 1.445000e-02

Joint ci ratio: 1.272688e-01	ci left: 1.251979e-02	ci right 1.423518e-02	k: 935	n:70000
Cons ci ratio: 1.080029e-01	ci left: 1.747290e-02	ci right 1.948158e-02	k: 1292	n:70000
KS ci ratio: 5.462398e-02	ci left: 6.665361e-02	ci right 7.041082e-02	k: 4796	n:70000
CDH12   70000 perm   24 sec   (2936 perm/sec)   p_kst 6.851429e-02   p_cons 1.845714e-02   p_joint 1.335714e-02

Joint ci ratio: 1.169459e-01	ci left: 1.303944e-02	ci right 1.467110e-02	k: 1107	n:80000
Cons ci ratio: 1.010524e-01	ci left: 1.752872e-02	ci right 1.940643e-02	k: 1476	n:80000
KS ci ratio: 5.099275e-02	ci left: 6.703075e-02	ci right 7.055060e-02	k: 5502	n:80000
CDH12   80000 perm   28 sec   (2896 perm/sec)   p_kst 6.877500e-02   p_cons 1.845000e-02   p_joint 1.383750e-02

Joint ci ratio: 1.190665e-01	ci left: 1.119099e-02	ci right 1.261851e-02	k: 1070	n:90000
Cons ci ratio: 9.439790e-02	ci left: 1.791180e-02	ci right 1.969719e-02	k: 1691	n:90000
KS ci ratio: 4.804677e-02	ci left: 6.720965e-02	ci right 7.052931e-02	k: 6197	n:90000
CDH12   90000 perm   31 sec   (2858 perm/sec)   p_kst 6.885556e-02   p_cons 1.878889e-02   p_joint 1.188889e-02

Joint ci ratio: 1.165267e-01	ci left: 1.053754e-02	ci right 1.185104e-02	k: 1118	n:100000
Cons ci ratio: 8.965101e-02	ci left: 1.791828e-02	ci right 1.960979e-02	k: 1875	n:100000
KS ci ratio: 4.550907e-02	ci left: 6.749599e-02	ci right 7.064906e-02	k: 6906	n:100000
CDH12   100000 perm   35 sec   (2820 perm/sec)   p_kst 6.906000e-02   p_cons 1.875000e-02   p_joint 1.118000e-02

Joint ci ratio: 9.948395e-02	ci left: 1.322530e-02	ci right 1.461869e-02	k: 1530	n:110000
Cons ci ratio: 8.509311e-02	ci left: 1.812125e-02	ci right 1.974062e-02	k: 2081	n:110000
KS ci ratio: 4.341485e-02	ci left: 6.750004e-02	ci right 7.050455e-02	k: 7589	n:110000
CDH12   110000 perm   39 sec   (2786 perm/sec)   p_kst 6.899091e-02   p_cons 1.891818e-02   p_joint 1.390909e-02

Outputting figure to mutsig2_images.part000000000034/CDH12.26_2429_110000_0.068991_0.018918_0.013909.png
                gene_name: CDH12
               theta_stop: 0.099 
                    nperm: 110000 
                     p_ks: 0.069 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.071 
                   p_cons: 0.019 
      ci_cons_bounds_left: 0.018 
     ci_cons_bounds_right: 0.020 
                  p_joint: 0.014 
     ci_joint_bounds_left: 0.013 
    ci_joint_bounds_right: 0.015 

Current progress: 6 percent done.
CDH23
Processing conservation and coverage...
92% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.947729e-02	ci left: 4.865527e-01	ci right 5.062494e-01	k: 4964	n:10000
Cons ci ratio: 4.427870e-02	ci left: 4.295415e-01	ci right 4.490938e-01	k: 4393	n:10000
KS ci ratio: 5.831909e-02	ci left: 3.020326e-01	ci right 3.202776e-01	k: 3111	n:10000
CDH23   10000 perm   4 sec   (2553 perm/sec)   p_kst 3.111000e-01   p_cons 4.393000e-01   p_joint 4.964000e-01

Outputting figure to mutsig2_images.part000000000034/CDH23.12_10761_10000_0.3111_0.4393_0.4964.png
                gene_name: CDH23
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 9 percent done.
CDH20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.929540e-02	ci left: 6.321112e-01	ci right 6.510063e-01	k: 6416	n:10000
Cons ci ratio: 2.442025e-02	ci left: 7.114903e-01	ci right 7.291812e-01	k: 7204	n:10000
KS ci ratio: 4.448599e-02	ci left: 4.272478e-01	ci right 4.467889e-01	k: 4370	n:10000
CDH20   10000 perm   2 sec   (4511 perm/sec)   p_kst 4.370000e-01   p_cons 7.204000e-01   p_joint 6.416000e-01

Outputting figure to mutsig2_images.part000000000034/CDH20.11_2450_10000_0.437_0.7204_0.6416.png
                gene_name: CDH20
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 11 percent done.
CDH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.767244e-02	ci left: 3.936645e-01	ci right 4.129918e-01	k: 4033	n:10000
Cons ci ratio: 4.635127e-02	ci left: 4.072119e-01	ci right 4.266366e-01	k: 4169	n:10000
KS ci ratio: 6.055541e-02	ci left: 2.862707e-01	ci right 3.042488e-01	k: 2952	n:10000
CDH2   10000 perm   2 sec   (4671 perm/sec)   p_kst 2.952000e-01   p_cons 4.169000e-01   p_joint 4.033000e-01

Outputting figure to mutsig2_images.part000000000034/CDH2.10_2785_10000_0.2952_0.4169_0.4033.png
                gene_name: CDH2
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 13 percent done.
CD5L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.925322e-02	ci left: 3.781344e-01	ci right 3.973310e-01	k: 3877	n:10000
Cons ci ratio: 8.537640e-02	ci left: 1.666153e-01	ci right 1.815750e-01	k: 1740	n:10000
KS ci ratio: 1.165041e-02	ci left: 9.133766e-01	ci right 9.241779e-01	k: 9189	n:10000
CD5L   10000 perm   2 sec   (4604 perm/sec)   p_kst 9.189000e-01   p_cons 1.740000e-01   p_joint 3.877000e-01

Outputting figure to mutsig2_images.part000000000034/CD5L.8_1068_10000_0.9189_0.174_0.3877.png
                gene_name: CD5L
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 15 percent done.
CDC42BPA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.666854e-02	ci left: 2.482593e-01	ci right 2.654825e-01	k: 2568	n:10000
Cons ci ratio: 5.772592e-02	ci left: 3.063966e-01	ci right 3.247110e-01	k: 3155	n:10000
KS ci ratio: 7.400364e-02	ci left: 2.109269e-01	ci right 2.272370e-01	k: 2190	n:10000
CDC42BPA   10000 perm   3 sec   (3808 perm/sec)   p_kst 2.190000e-01   p_cons 3.155000e-01   p_joint 2.568000e-01

Outputting figure to mutsig2_images.part000000000034/CDC42BPA.7_5304_10000_0.219_0.3155_0.2568.png
                gene_name: CDC42BPA
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 17 percent done.
CDH19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.482342e-02	ci left: 3.289257e-01	ci right 3.475686e-01	k: 3382	n:10000
Cons ci ratio: 5.795385e-02	ci left: 3.047104e-01	ci right 3.229982e-01	k: 3138	n:10000
KS ci ratio: 7.393882e-02	ci left: 2.112229e-01	ci right 2.275409e-01	k: 2193	n:10000
CDH19   10000 perm   2 sec   (4878 perm/sec)   p_kst 2.193000e-01   p_cons 3.138000e-01   p_joint 3.382000e-01

Outputting figure to mutsig2_images.part000000000034/CDH19.7_2363_10000_0.2193_0.3138_0.3382.png
                gene_name: CDH19
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 19 percent done.
CD96
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.670404e-02	ci left: 6.737778e-01	ci right 6.921155e-01	k: 6830	n:10000
Cons ci ratio: 2.272225e-02	ci left: 7.398746e-01	ci right 7.569805e-01	k: 7485	n:10000
KS ci ratio: 4.517969e-02	ci left: 4.196701e-01	ci right 4.391710e-01	k: 4294	n:10000
CD96   10000 perm   2 sec   (4875 perm/sec)   p_kst 4.294000e-01   p_cons 7.485000e-01   p_joint 6.830000e-01

Outputting figure to mutsig2_images.part000000000034/CD96.6_1818_10000_0.4294_0.7485_0.683.png
                gene_name: CD96
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 21 percent done.
CDC42BPB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.168182e-01	ci left: 9.525826e-02	ci right 1.071752e-01	k: 1011	n:10000
Cons ci ratio: 1.694391e-01	ci left: 4.648153e-02	ci right 5.518251e-02	k: 507	n:10000
KS ci ratio: 5.779280e-02	ci left: 3.059006e-01	ci right 3.242072e-01	k: 3150	n:10000
CDC42BPB   10000 perm   2 sec   (4102 perm/sec)   p_kst 3.150000e-01   p_cons 5.070000e-02   p_joint 1.011000e-01

Joint ci ratio: 7.052524e-02	ci left: 1.290611e-01	ci right 1.385456e-01	k: 2675	n:20000
Cons ci ratio: 1.184690e-01	ci left: 4.881745e-02	ci right 5.501365e-02	k: 1037	n:20000
KS ci ratio: 4.124754e-02	ci left: 3.046372e-01	ci right 3.175178e-01	k: 6221	n:20000
CDC42BPB   20000 perm   5 sec   (3713 perm/sec)   p_kst 3.110500e-01   p_cons 5.185000e-02   p_joint 1.337500e-01

Joint ci ratio: 7.062181e-02	ci left: 8.983477e-02	ci right 9.644427e-02	k: 2793	n:30000
Cons ci ratio: 9.582486e-02	ci left: 5.029613e-02	ci right 5.539091e-02	k: 1584	n:30000
KS ci ratio: 3.380727e-02	ci left: 3.042045e-01	ci right 3.146991e-01	k: 9283	n:30000
CDC42BPB   30000 perm   8 sec   (3588 perm/sec)   p_kst 3.094333e-01   p_cons 5.280000e-02   p_joint 9.310000e-02

Outputting figure to mutsig2_images.part000000000034/CDC42BPB.6_5284_30000_0.30943_0.0528_0.0931.png
                gene_name: CDC42BPB
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.053 
      ci_cons_bounds_left: 0.050 
     ci_cons_bounds_right: 0.055 
                  p_joint: 0.093 
     ci_joint_bounds_left: 0.090 
    ci_joint_bounds_right: 0.096 

Current progress: 23 percent done.
CDC6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.586320e-02	ci left: 5.344770e-01	ci right 5.540972e-01	k: 5443	n:10000
Cons ci ratio: 3.547462e-02	ci left: 5.398854e-01	ci right 5.594856e-01	k: 5497	n:10000
KS ci ratio: 4.735700e-02	ci left: 3.968515e-01	ci right 4.162030e-01	k: 4065	n:10000
CDC6   10000 perm   2 sec   (5445 perm/sec)   p_kst 4.065000e-01   p_cons 5.497000e-01   p_joint 5.443000e-01

Outputting figure to mutsig2_images.part000000000034/CDC6.6_1727_10000_0.4065_0.5497_0.5443.png
                gene_name: CDC6
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 26 percent done.
CDH11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.047280e-02	ci left: 7.775249e-01	ci right 7.937083e-01	k: 7857	n:10000
KS ci ratio: 2.117623e-02	ci left: 7.657748e-01	ci right 7.822653e-01	k: 7741	n:10000
CDH11   10000 perm   2 sec   (4873 perm/sec)   p_kst 7.741000e-01   p_cons 7.857000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000034/CDH11.6_2435_10000_0.7741_0.7857_1.png
                gene_name: CDH11
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 28 percent done.
CDCP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.499685e-02	ci left: 7.019041e-01	ci right 7.197729e-01	k: 7109	n:10000
Cons ci ratio: 2.700660e-02	ci left: 6.688421e-01	ci right 6.872541e-01	k: 6781	n:10000
KS ci ratio: 4.088419e-02	ci left: 4.690663e-01	ci right 4.887460e-01	k: 4789	n:10000
CDCP2   10000 perm   2 sec   (5301 perm/sec)   p_kst 4.789000e-01   p_cons 6.781000e-01   p_joint 7.109000e-01

Outputting figure to mutsig2_images.part000000000034/CDCP2.5_1366_10000_0.4789_0.6781_0.7109.png
                gene_name: CDCP2
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 30 percent done.
CDH16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.819289e-02	ci left: 8.151724e-01	ci right 8.302391e-01	k: 8228	n:10000
Cons ci ratio: 4.896405e-02	ci left: 3.809211e-01	ci right 4.001427e-01	k: 3905	n:10000
KS ci ratio: 1.655961e-02	ci left: 8.414233e-01	ci right 8.555730e-01	k: 8486	n:10000
CDH16   10000 perm   2 sec   (5412 perm/sec)   p_kst 8.486000e-01   p_cons 3.905000e-01   p_joint 8.228000e-01

Outputting figure to mutsig2_images.part000000000034/CDH16.5_2558_10000_0.8486_0.3905_0.8228.png
                gene_name: CDH16
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 32 percent done.
CD84
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.449503e-02	ci left: 4.271481e-01	ci right 4.466887e-01	k: 4369	n:10000
Cons ci ratio: 3.395993e-02	ci left: 5.614305e-01	ci right 5.809280e-01	k: 5712	n:10000
KS ci ratio: 6.437385e-02	ci left: 2.617124e-01	ci right 2.792215e-01	k: 2704	n:10000
CD84   10000 perm   2 sec   (6163 perm/sec)   p_kst 2.704000e-01   p_cons 5.712000e-01   p_joint 4.369000e-01

Outputting figure to mutsig2_images.part000000000034/CD84.4_1070_10000_0.2704_0.5712_0.4369.png
                gene_name: CD84
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 34 percent done.
CDC73
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.034997e-02	ci left: 9.298868e-01	ci right 9.396581e-01	k: 9349	n:10000
KS ci ratio: 2.600967e-02	ci left: 6.851647e-01	ci right 7.033220e-01	k: 6943	n:10000
CDC73   10000 perm   2 sec   (5795 perm/sec)   p_kst 6.943000e-01   p_cons 9.349000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000034/CDC73.4_1664_10000_0.6943_0.9349_1.png
                gene_name: CDC73
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 36 percent done.
CD80
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.185325e-02	ci left: 7.544383e-01	ci right 7.712083e-01	k: 7629	n:10000
Cons ci ratio: 1.430680e-02	ci left: 8.760270e-01	ci right 8.887493e-01	k: 8825	n:10000
KS ci ratio: 3.417529e-02	ci left: 5.583228e-01	ci right 5.778375e-01	k: 5681	n:10000
CD80   10000 perm   2 sec   (6527 perm/sec)   p_kst 5.681000e-01   p_cons 8.825000e-01   p_joint 7.629000e-01

Outputting figure to mutsig2_images.part000000000034/CD80.3_887_10000_0.5681_0.8825_0.7629.png
                gene_name: CD80
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 38 percent done.
CD86
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.956342e-02	ci left: 6.278885e-01	ci right 6.468314e-01	k: 6374	n:10000
Cons ci ratio: 1.077657e-02	ci left: 9.246163e-01	ci right 9.347317e-01	k: 9298	n:10000
KS ci ratio: 4.124628e-02	ci left: 4.646716e-01	ci right 4.843433e-01	k: 4745	n:10000
CD86   10000 perm   2 sec   (6097 perm/sec)   p_kst 4.745000e-01   p_cons 9.298000e-01   p_joint 6.374000e-01

Outputting figure to mutsig2_images.part000000000034/CD86.3_1018_10000_0.4745_0.9298_0.6374.png
                gene_name: CD86
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 40 percent done.
CD93
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.903464e-01	ci left: 1.529963e-02	ci right 2.058652e-02	k: 178	n:10000
Cons ci ratio: 2.436572e-02	ci left: 7.123987e-01	ci right 7.300722e-01	k: 7213	n:10000
KS ci ratio: 6.614075e-01	ci left: 2.355713e-03	ci right 4.747948e-03	k: 34	n:10000
CD93   10000 perm   2 sec   (5745 perm/sec)   p_kst 3.400000e-03   p_cons 7.213000e-01   p_joint 1.780000e-02

Joint ci ratio: 2.779027e-01	ci left: 8.481394e-03	ci right 1.126389e-02	k: 196	n:20000
Cons ci ratio: 1.793630e-02	ci left: 6.984743e-01	ci right 7.111661e-01	k: 14097	n:20000
KS ci ratio: 5.592997e-01	ci left: 1.770085e-03	ci right 3.180807e-03	k: 48	n:20000
CD93   20000 perm   4 sec   (5006 perm/sec)   p_kst 2.400000e-03   p_cons 7.048500e-01   p_joint 9.800000e-03

Joint ci ratio: 2.406518e-01	ci left: 7.711591e-03	ci right 9.851836e-03	k: 262	n:30000
Cons ci ratio: 1.465620e-02	ci left: 6.993342e-01	ci right 7.096929e-01	k: 21136	n:30000
KS ci ratio: 4.322924e-01	ci left: 2.144750e-03	ci right 3.354753e-03	k: 81	n:30000
CD93   30000 perm   6 sec   (4788 perm/sec)   p_kst 2.700000e-03   p_cons 7.045333e-01   p_joint 8.733333e-03

Joint ci ratio: 1.449724e-01	ci left: 1.664736e-02	ci right 1.927329e-02	k: 717	n:40000
Cons ci ratio: 1.231588e-02	ci left: 7.124821e-01	ci right 7.213364e-01	k: 28677	n:40000
KS ci ratio: 3.732384e-01	ci left: 2.238026e-03	ci right 3.286237e-03	k: 109	n:40000
CD93   40000 perm   9 sec   (4606 perm/sec)   p_kst 2.725000e-03   p_cons 7.169250e-01   p_joint 1.792500e-02

Joint ci ratio: 1.002357e-01	ci left: 2.819036e-02	ci right 3.118458e-02	k: 1483	n:50000
Cons ci ratio: 1.136236e-02	ci left: 7.001577e-01	ci right 7.081786e-01	k: 35209	n:50000
KS ci ratio: 3.261927e-01	ci left: 2.410984e-03	ci right 3.368181e-03	k: 143	n:50000
CD93   50000 perm   11 sec   (4469 perm/sec)   p_kst 2.860000e-03   p_cons 7.041800e-01   p_joint 2.966000e-02

Joint ci ratio: 8.811251e-02	ci left: 3.052452e-02	ci right 3.335433e-02	k: 1915	n:60000
Cons ci ratio: 1.035529e-02	ci left: 7.011990e-01	ci right 7.085145e-01	k: 42292	n:60000
KS ci ratio: 2.917385e-01	ci left: 2.562803e-03	ci right 3.453014e-03	k: 179	n:60000
CD93   60000 perm   14 sec   (4301 perm/sec)   p_kst 2.983333e-03   p_cons 7.048667e-01   p_joint 3.191667e-02

Joint ci ratio: 9.374236e-02	ci left: 2.322777e-02	ci right 2.552617e-02	k: 1705	n:70000
Cons ci ratio: 9.617661e-03	ci left: 7.001441e-01	ci right 7.069247e-01	k: 49248	n:70000
KS ci ratio: 2.720538e-01	ci left: 2.555164e-03	ci right 3.372614e-03	k: 206	n:70000
CD93   70000 perm   17 sec   (4216 perm/sec)   p_kst 2.942857e-03   p_cons 7.035429e-01   p_joint 2.435714e-02

Joint ci ratio: 9.550278e-02	ci left: 1.963910e-02	ci right 2.162088e-02	k: 1649	n:80000
Cons ci ratio: 9.007407e-03	ci left: 6.998577e-01	ci right 7.062026e-01	k: 56243	n:80000
KS ci ratio: 2.526535e-01	ci left: 2.621186e-03	ci right 3.390558e-03	k: 239	n:80000
CD93   80000 perm   19 sec   (4113 perm/sec)   p_kst 2.987500e-03   p_cons 7.030375e-01   p_joint 2.061250e-02

Joint ci ratio: 8.038170e-02	ci left: 2.470862e-02	ci right 2.678876e-02	k: 2316	n:90000
Cons ci ratio: 8.493485e-03	ci left: 6.999804e-01	ci right 7.059621e-01	k: 63268	n:90000
KS ci ratio: 2.399938e-01	ci left: 2.601006e-03	ci right 3.320512e-03	k: 265	n:90000
CD93   90000 perm   22 sec   (4042 perm/sec)   p_kst 2.944444e-03   p_cons 7.029778e-01   p_joint 2.573333e-02

Joint ci ratio: 9.796171e-02	ci left: 1.498738e-02	ci right 1.654089e-02	k: 1575	n:100000
Cons ci ratio: 7.794380e-03	ci left: 7.138558e-01	ci right 7.194516e-01	k: 71666	n:100000
KS ci ratio: 2.230174e-01	ci left: 2.736597e-03	ci right 3.432720e-03	k: 307	n:100000
CD93   100000 perm   25 sec   (3968 perm/sec)   p_kst 3.070000e-03   p_cons 7.166600e-01   p_joint 1.575000e-02

Joint ci ratio: 7.827603e-02	ci left: 2.141765e-02	ci right 2.317130e-02	k: 2451	n:110000
Cons ci ratio: 7.435412e-03	ci left: 7.137808e-01	ci right 7.191169e-01	k: 78810	n:110000
KS ci ratio: 2.151373e-01	ci left: 2.685428e-03	ci right 3.341210e-03	k: 330	n:110000
CD93   110000 perm   28 sec   (3907 perm/sec)   p_kst 3.000000e-03   p_cons 7.164545e-01   p_joint 2.228182e-02

Joint ci ratio: 7.310451e-02	ci left: 2.254387e-02	ci right 2.426260e-02	k: 2807	n:120000
Cons ci ratio: 7.125080e-03	ci left: 7.135395e-01	ci right 7.186500e-01	k: 85932	n:120000
KS ci ratio: 2.045881e-01	ci left: 2.737996e-03	ci right 3.369732e-03	k: 365	n:120000
CD93   120000 perm   31 sec   (3843 perm/sec)   p_kst 3.041667e-03   p_cons 7.161000e-01   p_joint 2.339167e-02

Joint ci ratio: 5.431525e-02	ci left: 3.747576e-02	ci right 3.957565e-02	k: 5007	n:130000
Cons ci ratio: 6.844521e-03	ci left: 7.137020e-01	ci right 7.186114e-01	k: 93101	n:130000
KS ci ratio: 1.720576e-01	ci left: 3.634694e-03	ci right 4.326182e-03	k: 516	n:130000
CD93   130000 perm   34 sec   (3786 perm/sec)   p_kst 3.969231e-03   p_cons 7.161615e-01   p_joint 3.851538e-02

Joint ci ratio: 5.647879e-02	ci left: 3.232400e-02	ci right 3.420969e-02	k: 4656	n:140000
Cons ci ratio: 6.588434e-03	ci left: 7.142314e-01	ci right 7.189597e-01	k: 100324	n:140000
KS ci ratio: 1.680516e-01	ci left: 3.546030e-03	ci right 4.203352e-03	k: 541	n:140000
CD93   140000 perm   38 sec   (3723 perm/sec)   p_kst 3.864286e-03   p_cons 7.166000e-01   p_joint 3.325714e-02

Joint ci ratio: 5.731659e-02	ci left: 2.937257e-02	ci right 3.111232e-02	k: 4535	n:150000
Cons ci ratio: 6.362004e-03	ci left: 7.145057e-01	ci right 7.190725e-01	k: 107519	n:150000
KS ci ratio: 1.613404e-01	ci left: 3.603667e-03	ci right 4.242410e-03	k: 587	n:150000
CD93   150000 perm   41 sec   (3665 perm/sec)   p_kst 3.913333e-03   p_cons 7.167933e-01   p_joint 3.023333e-02

Joint ci ratio: 5.388897e-02	ci left: 3.114915e-02	ci right 3.288037e-02	k: 5121	n:160000
Cons ci ratio: 6.167281e-03	ci left: 7.140967e-01	ci right 7.185205e-01	k: 114610	n:160000
KS ci ratio: 1.572525e-01	ci left: 3.564459e-03	ci right 4.178734e-03	k: 618	n:160000
CD93   160000 perm   44 sec   (3597 perm/sec)   p_kst 3.862500e-03   p_cons 7.163125e-01   p_joint 3.200625e-02

Joint ci ratio: 5.078609e-02	ci left: 3.299826e-02	ci right 3.472356e-02	k: 5755	n:170000
Cons ci ratio: 5.982114e-03	ci left: 7.142330e-01	ci right 7.185243e-01	k: 121785	n:170000
KS ci ratio: 1.533420e-01	ci left: 3.535702e-03	ci right 4.128476e-03	k: 650	n:170000
CD93   170000 perm   48 sec   (3542 perm/sec)   p_kst 3.823529e-03   p_cons 7.163824e-01   p_joint 3.385294e-02

Joint ci ratio: 4.841183e-02	ci left: 3.429298e-02	ci right 3.599981e-02	k: 6325	n:180000
Cons ci ratio: 5.820869e-03	ci left: 7.137825e-01	ci right 7.179550e-01	k: 128857	n:180000
KS ci ratio: 1.482993e-01	ci left: 3.579847e-03	ci right 4.158535e-03	k: 695	n:180000
CD93   180000 perm   52 sec   (3491 perm/sec)   p_kst 3.861111e-03   p_cons 7.158722e-01   p_joint 3.513889e-02

Joint ci ratio: 4.911251e-02	ci left: 3.164477e-02	ci right 3.324322e-02	k: 6163	n:190000
Cons ci ratio: 5.663766e-03	ci left: 7.139717e-01	ci right 7.180322e-01	k: 136041	n:190000
KS ci ratio: 1.436261e-01	ci left: 3.624704e-03	ci right 4.190597e-03	k: 741	n:190000
CD93   190000 perm   55 sec   (3446 perm/sec)   p_kst 3.900000e-03   p_cons 7.160053e-01   p_joint 3.243684e-02

Joint ci ratio: 4.829142e-02	ci left: 3.112423e-02	ci right 3.266937e-02	k: 6378	n:200000
Cons ci ratio: 5.518257e-03	ci left: 7.141784e-01	ci right 7.181353e-01	k: 143232	n:200000
KS ci ratio: 1.392798e-01	ci left: 3.670159e-03	ci right 4.224371e-03	k: 788	n:200000
CD93   200000 perm   59 sec   (3400 perm/sec)   p_kst 3.940000e-03   p_cons 7.161600e-01   p_joint 3.189000e-02

Joint ci ratio: 4.729177e-02	ci left: 3.093122e-02	ci right 3.243412e-02	k: 6652	n:210000
Cons ci ratio: 5.380764e-03	ci left: 7.145670e-01	ci right 7.184270e-01	k: 150465	n:210000
KS ci ratio: 1.355500e-01	ci left: 3.697714e-03	ci right 4.239928e-03	k: 832	n:210000
CD93   210000 perm   63 sec   (3356 perm/sec)   p_kst 3.961905e-03   p_cons 7.165000e-01   p_joint 3.167619e-02

Joint ci ratio: 4.920005e-02	ci left: 2.735501e-02	ci right 2.873928e-02	k: 6169	n:220000
Cons ci ratio: 5.256170e-03	ci left: 7.146799e-01	ci right 7.184508e-01	k: 157645	n:220000
KS ci ratio: 1.321803e-01	ci left: 3.718548e-03	ci right 4.249197e-03	k: 875	n:220000
CD93   220000 perm   66 sec   (3312 perm/sec)   p_kst 3.977273e-03   p_cons 7.165682e-01   p_joint 2.804091e-02

Joint ci ratio: 4.924321e-02	ci left: 2.615237e-02	ci right 2.747698e-02	k: 6166	n:230000
Cons ci ratio: 5.145021e-03	ci left: 7.143744e-01	ci right 7.180636e-01	k: 164731	n:230000
KS ci ratio: 1.288390e-01	ci left: 3.750347e-03	ci right 4.270971e-03	k: 921	n:230000
CD93   230000 perm   70 sec   (3269 perm/sec)   p_kst 4.004348e-03   p_cons 7.162217e-01   p_joint 2.680870e-02

Joint ci ratio: 4.865153e-02	ci left: 2.569635e-02	ci right 2.698179e-02	k: 6320	n:240000
Cons ci ratio: 5.036394e-03	ci left: 7.144375e-01	ci right 7.180489e-01	k: 171899	n:240000
KS ci ratio: 1.263962e-01	ci left: 3.739292e-03	ci right 4.247802e-03	k: 957	n:240000
CD93   240000 perm   74 sec   (3225 perm/sec)   p_kst 3.987500e-03   p_cons 7.162458e-01   p_joint 2.633333e-02

Joint ci ratio: 4.778189e-02	ci left: 2.558923e-02	ci right 2.684579e-02	k: 6553	n:250000
Cons ci ratio: 4.934564e-03	ci left: 7.144803e-01	ci right 7.180187e-01	k: 179063	n:250000
KS ci ratio: 1.240872e-01	ci left: 3.729208e-03	ci right 4.226400e-03	k: 993	n:250000
CD93   250000 perm   79 sec   (3182 perm/sec)   p_kst 3.972000e-03   p_cons 7.162520e-01   p_joint 2.621200e-02

Joint ci ratio: 4.797586e-02	ci left: 2.443367e-02	ci right 2.563849e-02	k: 6508	n:260000
Cons ci ratio: 4.841922e-03	ci left: 7.142469e-01	ci right 7.177175e-01	k: 186156	n:260000
KS ci ratio: 1.219003e-01	ci left: 3.719977e-03	ci right 4.206567e-03	k: 1029	n:260000
CD93   260000 perm   83 sec   (3141 perm/sec)   p_kst 3.957692e-03   p_cons 7.159846e-01   p_joint 2.503077e-02

Joint ci ratio: 4.785946e-02	ci left: 2.366389e-02	ci right 2.482784e-02	k: 6545	n:270000
Cons ci ratio: 4.746082e-03	ci left: 7.147365e-01	ci right 7.181404e-01	k: 193439	n:270000
KS ci ratio: 1.194879e-01	ci left: 3.733061e-03	ci right 4.211017e-03	k: 1071	n:270000
CD93   270000 perm   87 sec   (3098 perm/sec)   p_kst 3.966667e-03   p_cons 7.164407e-01   p_joint 2.424074e-02

Joint ci ratio: 4.891994e-02	ci left: 2.186916e-02	ci right 2.296933e-02	k: 6276	n:280000
Cons ci ratio: 4.659799e-03	ci left: 7.148338e-01	ci right 7.181760e-01	k: 200622	n:280000
KS ci ratio: 1.176382e-01	ci left: 3.717563e-03	ci right 4.185654e-03	k: 1105	n:280000
CD93   280000 perm   92 sec   (3059 perm/sec)   p_kst 3.946429e-03   p_cons 7.165071e-01   p_joint 2.241429e-02

Joint ci ratio: 4.679338e-02	ci left: 2.307442e-02	ci right 2.418340e-02	k: 6851	n:290000
Cons ci ratio: 4.577590e-03	ci left: 7.149663e-01	ci right 7.182500e-01	k: 207817	n:290000
KS ci ratio: 1.157699e-01	ci left: 3.709884e-03	ci right 4.169082e-03	k: 1141	n:290000
CD93   290000 perm   96 sec   (3018 perm/sec)   p_kst 3.934483e-03   p_cons 7.166103e-01   p_joint 2.362414e-02

Joint ci ratio: 4.856368e-02	ci left: 2.074019e-02	ci right 2.177575e-02	k: 6376	n:300000
Cons ci ratio: 4.501393e-03	ci left: 7.149269e-01	ci right 7.181556e-01	k: 214963	n:300000
KS ci ratio: 1.142314e-01	ci left: 3.686580e-03	ci right 4.136420e-03	k: 1172	n:300000
CD93   300000 perm   101 sec   (2979 perm/sec)   p_kst 3.906667e-03   p_cons 7.165433e-01   p_joint 2.125333e-02

Joint ci ratio: 4.795484e-02	ci left: 2.059376e-02	ci right 2.160876e-02	k: 6540	n:310000
Cons ci ratio: 4.426768e-03	ci left: 7.150843e-01	ci right 7.182600e-01	k: 222169	n:310000
KS ci ratio: 1.116868e-01	ci left: 3.736935e-03	ci right 4.182094e-03	k: 1226	n:310000
CD93   310000 perm   105 sec   (2941 perm/sec)   p_kst 3.954839e-03   p_cons 7.166742e-01   p_joint 2.109677e-02

Joint ci ratio: 4.799722e-02	ci left: 1.992843e-02	ci right 2.091153e-02	k: 6533	n:320000
Cons ci ratio: 4.358652e-03	ci left: 7.149600e-01	ci right 7.180861e-01	k: 229288	n:320000
KS ci ratio: 1.100842e-01	ci left: 3.729535e-03	ci right 4.167024e-03	k: 1262	n:320000
CD93   320000 perm   110 sec   (2904 perm/sec)   p_kst 3.943750e-03   p_cons 7.165250e-01   p_joint 2.041562e-02

Joint ci ratio: 4.831500e-02	ci left: 1.908483e-02	ci right 2.003272e-02	k: 6453	n:330000
Cons ci ratio: 4.289679e-03	ci left: 7.152138e-01	ci right 7.182914e-01	k: 236529	n:330000
KS ci ratio: 1.085486e-01	ci left: 3.722626e-03	ci right 4.152824e-03	k: 1298	n:330000
CD93   330000 perm   115 sec   (2869 perm/sec)   p_kst 3.933333e-03   p_cons 7.167545e-01   p_joint 1.955455e-02

Joint ci ratio: 4.536264e-02	ci left: 2.100344e-02	ci right 2.198121e-02	k: 7306	n:340000
Cons ci ratio: 4.224152e-03	ci left: 7.154266e-01	ci right 7.184579e-01	k: 243761	n:340000
KS ci ratio: 1.065560e-01	ci left: 3.753381e-03	ci right 4.178671e-03	k: 1347	n:340000
CD93   340000 perm   120 sec   (2833 perm/sec)   p_kst 3.961765e-03   p_cons 7.169441e-01   p_joint 2.148824e-02

Joint ci ratio: 4.693929e-02	ci left: 1.907835e-02	ci right 1.999820e-02	k: 6837	n:350000
Cons ci ratio: 4.161331e-03	ci left: 7.156475e-01	ci right 7.186346e-01	k: 251000	n:350000
KS ci ratio: 1.049714e-01	ci left: 3.760187e-03	ci right 4.179520e-03	k: 1388	n:350000
CD93   350000 perm   125 sec   (2799 perm/sec)   p_kst 3.965714e-03   p_cons 7.171429e-01   p_joint 1.953429e-02

Joint ci ratio: 4.387586e-02	ci left: 2.121552e-02	ci right 2.216998e-02	k: 7808	n:360000
Cons ci ratio: 4.102915e-03	ci left: 7.156896e-01	ci right 7.186347e-01	k: 258179	n:360000
KS ci ratio: 1.034554e-01	ci left: 3.766658e-03	ci right 4.180278e-03	k: 1429	n:360000
CD93   360000 perm   130 sec   (2766 perm/sec)   p_kst 3.969444e-03   p_cons 7.171639e-01   p_joint 2.168889e-02

Joint ci ratio: 4.269769e-02	ci left: 2.179720e-02	ci right 2.275085e-02	k: 8240	n:370000
Cons ci ratio: 4.045274e-03	ci left: 7.158920e-01	ci right 7.187965e-01	k: 265418	n:370000
KS ci ratio: 1.018297e-01	ci left: 3.785991e-03	ci right 4.194810e-03	k: 1475	n:370000
CD93   370000 perm   136 sec   (2730 perm/sec)   p_kst 3.986486e-03   p_cons 7.173459e-01   p_joint 2.227027e-02

Joint ci ratio: 4.255504e-02	ci left: 2.137710e-02	ci right 2.230916e-02	k: 8299	n:380000
Cons ci ratio: 3.991575e-03	ci left: 7.159233e-01	ci right 7.187892e-01	k: 272596	n:380000
KS ci ratio: 1.006440e-01	ci left: 3.776132e-03	ci right 4.178858e-03	k: 1510	n:380000
CD93   380000 perm   141 sec   (2699 perm/sec)   p_kst 3.973684e-03   p_cons 7.173579e-01   p_joint 2.183947e-02

Joint ci ratio: 4.234362e-02	ci left: 2.104706e-02	ci right 2.196007e-02	k: 8385	n:390000
Cons ci ratio: 3.941653e-03	ci left: 7.157785e-01	ci right 7.186080e-01	k: 279706	n:390000
KS ci ratio: 9.940211e-02	ci left: 3.774306e-03	ci right 4.171581e-03	k: 1548	n:390000
CD93   390000 perm   146 sec   (2667 perm/sec)   p_kst 3.969231e-03   p_cons 7.171949e-01   p_joint 2.150000e-02

Outputting figure to mutsig2_images.part000000000034/CD93.3_1967_390000_0.0039692_0.71719_0.0215.png
                gene_name: CD93
               theta_stop: 0.099 
                    nperm: 390000 
                     p_ks: 0.0040 
        ci_ks_bounds_left: 0.0038 
       ci_ks_bounds_right: 0.0042 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.021 
     ci_joint_bounds_left: 0.021 
    ci_joint_bounds_right: 0.022 

Current progress: 43 percent done.
CDAN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.659211e-02	ci left: 5.244645e-01	ci right 5.441155e-01	k: 5343	n:10000
Cons ci ratio: 6.062823e-02	ci left: 2.857752e-01	ci right 3.037445e-01	k: 2947	n:10000
KS ci ratio: 4.582155e-02	ci left: 4.127924e-01	ci right 4.322528e-01	k: 4225	n:10000
CDAN1   10000 perm   2 sec   (4701 perm/sec)   p_kst 4.225000e-01   p_cons 2.947000e-01   p_joint 5.343000e-01

Outputting figure to mutsig2_images.part000000000034/CDAN1.3_3796_10000_0.4225_0.2947_0.5343.png
                gene_name: CDAN1
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 45 percent done.
CDC20B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.885856e-02	ci left: 4.944505e-01	ci right 5.141470e-01	k: 5043	n:10000
Cons ci ratio: 8.252124e-02	ci left: 1.764483e-01	ci right 1.917362e-01	k: 1840	n:10000
KS ci ratio: 1.801178e-02	ci left: 8.181200e-01	ci right 8.330898e-01	k: 8257	n:10000
CDC20B   10000 perm   2 sec   (5816 perm/sec)   p_kst 8.257000e-01   p_cons 1.840000e-01   p_joint 5.043000e-01

Outputting figure to mutsig2_images.part000000000034/CDC20B.3_1608_10000_0.8257_0.184_0.5043.png
                gene_name: CDC20B
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 47 percent done.
CDC27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.035121e-02	ci left: 7.795518e-01	ci right 7.956803e-01	k: 7877	n:10000
KS ci ratio: 2.587498e-02	ci left: 6.873824e-01	ci right 7.055030e-01	k: 6965	n:10000
CDC27   10000 perm   2 sec   (5021 perm/sec)   p_kst 6.965000e-01   p_cons 7.877000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000034/CDC27.3_2569_10000_0.6965_0.7877_1.png
                gene_name: CDC27
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 49 percent done.
CDC42BPG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.229061e-02	ci left: 5.860046e-01	ci right 6.053396e-01	k: 5957	n:10000
Cons ci ratio: 9.592170e-02	ci left: 1.361934e-01	ci right 1.500152e-01	k: 1430	n:10000
KS ci ratio: 2.754004e-02	ci left: 6.601821e-01	ci right 6.787191e-01	k: 6695	n:10000
CDC42BPG   10000 perm   2 sec   (4500 perm/sec)   p_kst 6.695000e-01   p_cons 1.430000e-01   p_joint 5.957000e-01

Outputting figure to mutsig2_images.part000000000034/CDC42BPG.3_4804_10000_0.6695_0.143_0.5957.png
                gene_name: CDC42BPG
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 51 percent done.
CDC42EP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.120469e-03	ci left: 9.920588e-01	ci right 9.952433e-01	k: 9938	n:10000
KS ci ratio: 2.199815e-02	ci left: 7.520101e-01	ci right 7.688379e-01	k: 7605	n:10000
CDC42EP4   10000 perm   2 sec   (6338 perm/sec)   p_kst 7.605000e-01   p_cons 9.938000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000034/CDC42EP4.3_1075_10000_0.7605_0.9938_1.png
                gene_name: CDC42EP4
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 1.00 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 53 percent done.
CDC7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.219017e-02	ci left: 5.875100e-01	ci right 6.068334e-01	k: 5972	n:10000
Cons ci ratio: 4.463999e-02	ci left: 4.255526e-01	ci right 4.450851e-01	k: 4353	n:10000
KS ci ratio: 3.982620e-02	ci left: 4.821550e-01	ci right 5.018497e-01	k: 4920	n:10000
CDC7   10000 perm   2 sec   (5623 perm/sec)   p_kst 4.920000e-01   p_cons 4.353000e-01   p_joint 5.972000e-01

Outputting figure to mutsig2_images.part000000000034/CDC7.3_1769_10000_0.492_0.4353_0.5972.png
                gene_name: CDC7
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 55 percent done.
CDH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.710988e-02	ci left: 5.174580e-01	ci right 5.371261e-01	k: 5273	n:10000
Cons ci ratio: 4.254207e-02	ci left: 4.492961e-01	ci right 4.689277e-01	k: 4591	n:10000
KS ci ratio: 5.022109e-02	ci left: 3.689804e-01	ci right 3.880904e-01	k: 3785	n:10000
CDH1   10000 perm   2 sec   (5229 perm/sec)   p_kst 3.785000e-01   p_cons 4.591000e-01   p_joint 5.273000e-01

Outputting figure to mutsig2_images.part000000000034/CDH1.3_2713_10000_0.3785_0.4591_0.5273.png
                gene_name: CDH1
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 57 percent done.
CDH13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.709500e-02	ci left: 5.176582e-01	ci right 5.373258e-01	k: 5275	n:10000
Cons ci ratio: 3.980231e-02	ci left: 4.824548e-01	ci right 5.021497e-01	k: 4923	n:10000
KS ci ratio: 4.648497e-02	ci left: 4.058169e-01	ci right 4.252323e-01	k: 4155	n:10000
CDH13   10000 perm   2 sec   (5484 perm/sec)   p_kst 4.155000e-01   p_cons 4.923000e-01   p_joint 5.275000e-01

Outputting figure to mutsig2_images.part000000000034/CDH13.3_2198_10000_0.4155_0.4923_0.5275.png
                gene_name: CDH13
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 60 percent done.
CDH24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.389257e-02	ci left: 1.716291e-01	ci right 1.867583e-01	k: 1791	n:10000
Cons ci ratio: 3.839503e-02	ci left: 5.004505e-01	ci right 5.201435e-01	k: 5103	n:10000
KS ci ratio: 1.886187e-01	ci left: 3.748413e-02	ci right 4.538584e-02	k: 413	n:10000
CDH24   10000 perm   2 sec   (5019 perm/sec)   p_kst 4.130000e-02   p_cons 5.103000e-01   p_joint 1.791000e-01

Joint ci ratio: 7.622039e-02	ci left: 1.123305e-01	ci right 1.212812e-01	k: 2335	n:20000
Cons ci ratio: 2.747369e-02	ci left: 4.974455e-01	ci right 5.113532e-01	k: 10088	n:20000
KS ci ratio: 1.329584e-01	ci left: 3.887454e-02	ci right 4.445971e-02	k: 832	n:20000
CDH24   20000 perm   4 sec   (4585 perm/sec)   p_kst 4.160000e-02   p_cons 5.044000e-01   p_joint 1.167500e-01

Joint ci ratio: 6.592305e-02	ci left: 1.019469e-01	ci right 1.089297e-01	k: 3162	n:30000
Cons ci ratio: 2.241778e-02	ci left: 4.990588e-01	ci right 5.104070e-01	k: 15142	n:30000
KS ci ratio: 1.073782e-01	ci left: 4.024502e-02	ci right 4.484410e-02	k: 1275	n:30000
CDH24   30000 perm   7 sec   (4390 perm/sec)   p_kst 4.250000e-02   p_cons 5.047333e-01   p_joint 1.054000e-01

Joint ci ratio: 5.269061e-02	ci left: 1.183381e-01	ci right 1.247670e-01	k: 4861	n:40000
Cons ci ratio: 1.934129e-02	ci left: 5.017127e-01	ci right 5.115363e-01	k: 20265	n:40000
KS ci ratio: 9.243597e-02	ci left: 4.103278e-02	ci right 4.503391e-02	k: 1720	n:40000
CDH24   40000 perm   9 sec   (4267 perm/sec)   p_kst 4.300000e-02   p_cons 5.066250e-01   p_joint 1.215250e-01

Outputting figure to mutsig2_images.part000000000034/CDH24.3_2508_40000_0.043_0.50662_0.12152.png
                gene_name: CDH24
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.043 
        ci_ks_bounds_left: 0.041 
       ci_ks_bounds_right: 0.045 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 62 percent done.
CD5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.707555e-02	ci left: 1.975185e-01	ci right 2.134534e-01	k: 2054	n:10000
Cons ci ratio: 1.200793e-01	ci left: 9.048895e-02	ci right 1.021474e-01	k: 962	n:10000
KS ci ratio: 2.817083e-02	ci left: 6.500161e-01	ci right 6.686910e-01	k: 6594	n:10000
CD5   10000 perm   2 sec   (6210 perm/sec)   p_kst 6.594000e-01   p_cons 9.620000e-02   p_joint 2.054000e-01

Joint ci ratio: 5.908098e-02	ci left: 1.750432e-01	ci right 1.857498e-01	k: 3607	n:20000
Cons ci ratio: 8.461913e-02	ci left: 9.278496e-02	ci right 1.010327e-01	k: 1937	n:20000
KS ci ratio: 1.997381e-02	ci left: 6.515788e-01	ci right 6.647751e-01	k: 13164	n:20000
CD5   20000 perm   4 sec   (5402 perm/sec)   p_kst 6.582000e-01   p_cons 9.685000e-02   p_joint 1.803500e-01

Outputting figure to mutsig2_images.part000000000034/CD5.2_1528_20000_0.6582_0.09685_0.18035.png
                gene_name: CD5
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.097 
      ci_cons_bounds_left: 0.093 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 64 percent done.
CD53
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.596680e-02	ci left: 6.858703e-01	ci right 7.040160e-01	k: 6950	n:10000
KS ci ratio: 1.405052e-02	ci left: 8.798130e-01	ci right 8.923611e-01	k: 8862	n:10000
CD53   10000 perm   1 sec   (6843 perm/sec)   p_kst 8.862000e-01   p_cons 6.950000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000034/CD53.2_688_10000_0.8862_0.695_1.png
                gene_name: CD53
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 66 percent done.
CD6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.277887e-01	ci left: 8.047904e-02	ci right 9.156351e-02	k: 859	n:10000
Cons ci ratio: 4.120495e-02	ci left: 4.651709e-01	ci right 4.848436e-01	k: 4750	n:10000
KS ci ratio: 5.132010e-01	ci left: 4.319899e-03	ci right 7.378784e-03	k: 57	n:10000
CD6   10000 perm   2 sec   (6098 perm/sec)   p_kst 5.700000e-03   p_cons 4.750000e-01   p_joint 8.590000e-02

Joint ci ratio: 9.348920e-02	ci left: 7.701023e-02	ci right 8.461216e-02	k: 1615	n:20000
Cons ci ratio: 2.900752e-02	ci left: 4.703064e-01	ci right 4.842002e-01	k: 9545	n:20000
KS ci ratio: 3.761731e-01	ci left: 4.386465e-03	ci right 6.461320e-03	k: 107	n:20000
CD6   20000 perm   4 sec   (5379 perm/sec)   p_kst 5.350000e-03   p_cons 4.772500e-01   p_joint 8.075000e-02

Joint ci ratio: 9.151498e-02	ci left: 5.498984e-02	ci right 6.029623e-02	k: 1728	n:30000
Cons ci ratio: 2.369387e-02	ci left: 4.714005e-01	ci right 4.827373e-01	k: 14312	n:30000
KS ci ratio: 3.150656e-01	ci left: 4.325514e-03	ci right 5.972562e-03	k: 153	n:30000
CD6   30000 perm   6 sec   (5102 perm/sec)   p_kst 5.100000e-03   p_cons 4.770667e-01   p_joint 5.760000e-02

Joint ci ratio: 1.477196e-01	ci left: 1.602077e-02	ci right 1.859998e-02	k: 691	n:40000
Cons ci ratio: 2.058740e-02	ci left: 4.705204e-01	ci right 4.803331e-01	k: 19017	n:40000
KS ci ratio: 2.751095e-01	ci left: 4.355699e-03	ci right 5.767626e-03	k: 201	n:40000
CD6   40000 perm   8 sec   (4915 perm/sec)   p_kst 5.025000e-03   p_cons 4.754250e-01   p_joint 1.727500e-02

Joint ci ratio: 1.320471e-01	ci left: 1.617522e-02	ci right 1.848131e-02	k: 865	n:50000
Cons ci ratio: 1.839434e-02	ci left: 4.715740e-01	ci right 4.803488e-01	k: 23798	n:50000
KS ci ratio: 2.482997e-01	ci left: 4.344346e-03	ci right 5.594193e-03	k: 247	n:50000
CD6   50000 perm   10 sec   (4774 perm/sec)   p_kst 4.940000e-03   p_cons 4.759600e-01   p_joint 1.730000e-02

Joint ci ratio: 7.602179e-02	ci left: 4.081789e-02	ci right 4.405989e-02	k: 2545	n:60000
Cons ci ratio: 1.681847e-02	ci left: 4.711638e-01	ci right 4.791719e-01	k: 28510	n:60000
KS ci ratio: 2.213467e-01	ci left: 4.624464e-03	ci right 5.790851e-03	k: 311	n:60000
CD6   60000 perm   13 sec   (4660 perm/sec)   p_kst 5.183333e-03   p_cons 4.751667e-01   p_joint 4.241667e-02

Joint ci ratio: 1.235742e-01	ci left: 1.329502e-02	ci right 1.505988e-02	k: 991	n:70000
Cons ci ratio: 1.553382e-02	ci left: 4.726512e-01	ci right 4.800650e-01	k: 33345	n:70000
KS ci ratio: 2.035270e-01	ci left: 4.734883e-03	ci right 5.821033e-03	k: 368	n:70000
CD6   70000 perm   15 sec   (4552 perm/sec)   p_kst 5.257143e-03   p_cons 4.763571e-01   p_joint 1.415714e-02

Joint ci ratio: 1.148106e-01	ci left: 1.353728e-02	ci right 1.519821e-02	k: 1148	n:80000
Cons ci ratio: 1.455195e-02	ci left: 4.721590e-01	ci right 4.790927e-01	k: 38050	n:80000
KS ci ratio: 1.900912e-01	ci left: 4.784804e-03	ci right 5.801580e-03	k: 422	n:80000
CD6   80000 perm   18 sec   (4453 perm/sec)   p_kst 5.275000e-03   p_cons 4.756250e-01   p_joint 1.435000e-02

Joint ci ratio: 5.026918e-02	ci left: 6.169573e-02	ci right 6.488805e-02	k: 5695	n:90000
Cons ci ratio: 1.374245e-02	ci left: 4.715328e-01	ci right 4.780688e-01	k: 42732	n:90000
KS ci ratio: 1.744686e-01	ci left: 5.091018e-03	ci right 6.074595e-03	k: 501	n:90000
CD6   90000 perm   21 sec   (4365 perm/sec)   p_kst 5.566667e-03   p_cons 4.748000e-01   p_joint 6.327778e-02

Joint ci ratio: 4.667383e-02	ci left: 6.435007e-02	ci right 6.743517e-02	k: 6588	n:100000
Cons ci ratio: 1.305530e-02	ci left: 4.710110e-01	ci right 4.772105e-01	k: 47411	n:100000
KS ci ratio: 1.663843e-01	ci left: 5.060590e-03	ci right 5.988445e-03	k: 551	n:100000
CD6   100000 perm   23 sec   (4274 perm/sec)   p_kst 5.510000e-03   p_cons 4.741100e-01   p_joint 6.588000e-02

Joint ci ratio: 4.758853e-02	ci left: 5.671570e-02	ci right 5.948947e-02	k: 6390	n:110000
Cons ci ratio: 1.243644e-02	ci left: 4.716089e-01	ci right 4.775198e-01	k: 52202	n:110000
KS ci ratio: 1.593288e-01	ci left: 5.036556e-03	ci right 5.917099e-03	k: 601	n:110000
CD6   110000 perm   26 sec   (4192 perm/sec)   p_kst 5.463636e-03   p_cons 4.745636e-01   p_joint 5.809091e-02

Joint ci ratio: 6.411647e-02	ci left: 2.923892e-02	ci right 3.118387e-02	k: 3624	n:120000
Cons ci ratio: 1.191031e-02	ci left: 4.715962e-01	ci right 4.772550e-01	k: 56931	n:120000
KS ci ratio: 1.532190e-01	ci left: 5.009206e-03	ci right 5.848301e-03	k: 650	n:120000
CD6   120000 perm   29 sec   (4117 perm/sec)   p_kst 5.416667e-03   p_cons 4.744250e-01   p_joint 3.020000e-02

Joint ci ratio: 4.742874e-02	ci left: 4.873780e-02	ci right 5.111310e-02	k: 6489	n:130000
Cons ci ratio: 1.144859e-02	ci left: 4.714670e-01	ci right 4.769034e-01	k: 61644	n:130000
KS ci ratio: 1.468161e-01	ci left: 5.053302e-03	ci right 5.861306e-03	k: 708	n:130000
CD6   130000 perm   32 sec   (4041 perm/sec)   p_kst 5.446154e-03   p_cons 4.741846e-01   p_joint 4.991538e-02

Joint ci ratio: 4.740672e-02	ci left: 4.545934e-02	ci right 4.767378e-02	k: 6518	n:140000
Cons ci ratio: 1.102849e-02	ci left: 4.717313e-01	ci right 4.769697e-01	k: 66409	n:140000
KS ci ratio: 1.407856e-01	ci left: 5.119292e-03	ci right 5.901403e-03	k: 770	n:140000
CD6   140000 perm   35 sec   (3969 perm/sec)   p_kst 5.500000e-03   p_cons 4.743500e-01   p_joint 4.655714e-02

Joint ci ratio: 4.479806e-02	ci left: 4.747764e-02	ci right 4.965985e-02	k: 7284	n:150000
Cons ci ratio: 1.065575e-02	ci left: 4.717636e-01	ci right 4.768241e-01	k: 71144	n:150000
KS ci ratio: 1.366849e-01	ci left: 5.080457e-03	ci right 5.832187e-03	k: 817	n:150000
CD6   150000 perm   38 sec   (3903 perm/sec)   p_kst 5.446667e-03   p_cons 4.742933e-01   p_joint 4.856000e-02

Joint ci ratio: 4.400616e-02	ci left: 4.620927e-02	ci right 4.829467e-02	k: 7559	n:160000
Cons ci ratio: 1.031790e-02	ci left: 4.718194e-01	ci right 4.767190e-01	k: 75883	n:160000
KS ci ratio: 1.317036e-01	ci left: 5.143473e-03	ci right 5.874621e-03	k: 880	n:160000
CD6   160000 perm   42 sec   (3833 perm/sec)   p_kst 5.500000e-03   p_cons 4.742688e-01   p_joint 4.724375e-02

Joint ci ratio: 4.191884e-02	ci left: 4.789707e-02	ci right 4.995364e-02	k: 8316	n:170000
Cons ci ratio: 1.001382e-02	ci left: 4.716945e-01	ci right 4.764476e-01	k: 80592	n:170000
KS ci ratio: 1.276386e-01	ci left: 5.165338e-03	ci right 5.875215e-03	k: 937	n:170000
CD6   170000 perm   45 sec   (3767 perm/sec)   p_kst 5.511765e-03   p_cons 4.740706e-01   p_joint 4.891765e-02

Joint ci ratio: 4.066317e-02	ci left: 4.809528e-02	ci right 5.009705e-02	k: 8836	n:180000
Cons ci ratio: 9.722770e-03	ci left: 4.722186e-01	ci right 4.768378e-01	k: 85415	n:180000
KS ci ratio: 1.241164e-01	ci left: 5.168929e-03	ci right 5.858255e-03	k: 991	n:180000
CD6   180000 perm   49 sec   (3698 perm/sec)   p_kst 5.505556e-03   p_cons 4.745278e-01   p_joint 4.908889e-02

Joint ci ratio: 4.026411e-02	ci left: 4.655828e-02	ci right 4.847661e-02	k: 9027	n:190000
Cons ci ratio: 9.465479e-03	ci left: 4.721735e-01	ci right 4.766693e-01	k: 90140	n:190000
KS ci ratio: 1.208124e-01	ci left: 5.177488e-03	ci right 5.848261e-03	k: 1046	n:190000
CD6   190000 perm   52 sec   (3638 perm/sec)   p_kst 5.505263e-03   p_cons 4.744211e-01   p_joint 4.751053e-02

Joint ci ratio: 3.856799e-02	ci left: 4.816697e-02	ci right 5.006613e-02	k: 9822	n:200000
Cons ci ratio: 9.230828e-03	ci left: 4.719595e-01	ci right 4.763412e-01	k: 94830	n:200000
KS ci ratio: 1.175982e-01	ci left: 5.199970e-03	ci right 5.854487e-03	k: 1104	n:200000
CD6   200000 perm   56 sec   (3579 perm/sec)   p_kst 5.520000e-03   p_cons 4.741500e-01   p_joint 4.911000e-02

Joint ci ratio: 3.760813e-02	ci left: 4.826464e-02	ci right 5.011926e-02	k: 10329	n:210000
Cons ci ratio: 9.004026e-03	ci left: 4.722528e-01	ci right 4.765289e-01	k: 99622	n:210000
KS ci ratio: 1.143314e-01	ci left: 5.248282e-03	ci right 5.889291e-03	k: 1168	n:210000
CD6   210000 perm   60 sec   (3523 perm/sec)   p_kst 5.561905e-03   p_cons 4.743905e-01   p_joint 4.918571e-02

Joint ci ratio: 3.821266e-02	ci left: 4.477702e-02	ci right 4.652588e-02	k: 10042	n:220000
Cons ci ratio: 8.793477e-03	ci left: 4.725024e-01	ci right 4.766801e-01	k: 104410	n:220000
KS ci ratio: 1.112319e-01	ci left: 5.301269e-03	ci right 5.930046e-03	k: 1234	n:220000
CD6   220000 perm   63 sec   (3469 perm/sec)   p_kst 5.609091e-03   p_cons 4.745909e-01   p_joint 4.564545e-02

Joint ci ratio: 3.653727e-02	ci left: 4.678941e-02	ci right 4.853506e-02	k: 10961	n:230000
Cons ci ratio: 8.599961e-03	ci left: 4.725617e-01	ci right 4.766476e-01	k: 109159	n:230000
KS ci ratio: 1.087503e-01	ci left: 5.311789e-03	ci right 5.926857e-03	k: 1291	n:230000
CD6   230000 perm   67 sec   (3414 perm/sec)   p_kst 5.613043e-03   p_cons 4.746043e-01   p_joint 4.765652e-02

Joint ci ratio: 3.657885e-02	ci left: 4.483074e-02	ci right 4.650525e-02	k: 10959	n:240000
Cons ci ratio: 8.417770e-03	ci left: 4.726713e-01	ci right 4.766710e-01	k: 113921	n:240000
KS ci ratio: 1.062695e-01	ci left: 5.337801e-03	ci right 5.940899e-03	k: 1352	n:240000
CD6   240000 perm   71 sec   (3362 perm/sec)   p_kst 5.633333e-03   p_cons 4.746708e-01   p_joint 4.566250e-02

Joint ci ratio: 3.584419e-02	ci left: 4.483707e-02	ci right 4.647749e-02	k: 11413	n:250000
Cons ci ratio: 8.246951e-03	ci left: 4.727568e-01	ci right 4.766757e-01	k: 118679	n:250000
KS ci ratio: 1.042108e-01	ci left: 5.334603e-03	ci right 5.924948e-03	k: 1406	n:250000
CD6   250000 perm   75 sec   (3313 perm/sec)   p_kst 5.624000e-03   p_cons 4.747160e-01   p_joint 4.565200e-02

Joint ci ratio: 3.513349e-02	ci left: 4.488899e-02	ci right 4.649808e-02	k: 11879	n:260000
Cons ci ratio: 8.080517e-03	ci left: 4.731827e-01	ci right 4.770256e-01	k: 123527	n:260000
KS ci ratio: 1.022672e-01	ci left: 5.331755e-03	ci right 5.910119e-03	k: 1460	n:260000
CD6   260000 perm   80 sec   (3266 perm/sec)   p_kst 5.615385e-03   p_cons 4.751038e-01   p_joint 4.568846e-02

Joint ci ratio: 3.480004e-02	ci left: 4.410356e-02	ci right 4.566919e-02	k: 12118	n:270000
Cons ci ratio: 7.926526e-03	ci left: 4.734036e-01	ci right 4.771747e-01	k: 128328	n:270000
KS ci ratio: 1.005621e-01	ci left: 5.314768e-03	ci right 5.881109e-03	k: 1510	n:270000
CD6   270000 perm   84 sec   (3217 perm/sec)   p_kst 5.592593e-03   p_cons 4.752889e-01   p_joint 4.488148e-02

Joint ci ratio: 3.388581e-02	ci left: 4.484084e-02	ci right 4.639001e-02	k: 12771	n:280000
Cons ci ratio: 7.782910e-03	ci left: 4.734880e-01	ci right 4.771911e-01	k: 133095	n:280000
KS ci ratio: 9.897142e-02	ci left: 5.295585e-03	ci right 5.850438e-03	k: 1559	n:280000
CD6   280000 perm   88 sec   (3174 perm/sec)   p_kst 5.567857e-03   p_cons 4.753393e-01   p_joint 4.561071e-02

Outputting figure to mutsig2_images.part000000000034/CD6.2_2059_280000_0.0055679_0.47534_0.045611.png
                gene_name: CD6
               theta_stop: 0.099 
                    nperm: 280000 
                     p_ks: 0.0056 
        ci_ks_bounds_left: 0.0053 
       ci_ks_bounds_right: 0.0059 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.046 
     ci_joint_bounds_left: 0.045 
    ci_joint_bounds_right: 0.046 

Current progress: 68 percent done.
CD81
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.193945e-01	ci left: 9.146191e-02	ci right 1.031739e-01	k: 972	n:10000
Cons ci ratio: 6.621760e-02	ci left: 2.508304e-01	ci right 2.681099e-01	k: 2594	n:10000
KS ci ratio: 1.851468e-01	ci left: 3.891660e-02	ci right 4.695241e-02	k: 428	n:10000
CD81   10000 perm   2 sec   (6613 perm/sec)   p_kst 4.280000e-02   p_cons 2.594000e-01   p_joint 9.720000e-02

Joint ci ratio: 1.013818e-01	ci left: 6.601338e-02	ci right 7.311238e-02	k: 1390	n:20000
Cons ci ratio: 4.908967e-02	ci left: 2.357796e-01	ci right 2.476955e-01	k: 4834	n:20000
KS ci ratio: 1.328752e-01	ci left: 3.892294e-02	ci right 4.451129e-02	k: 833	n:20000
CD81   20000 perm   3 sec   (5750 perm/sec)   p_kst 4.165000e-02   p_cons 2.417000e-01   p_joint 6.950000e-02

Joint ci ratio: 3.772707e-02	ci left: 2.596147e-01	ci right 2.696310e-01	k: 7938	n:30000
Cons ci ratio: 3.972236e-02	ci left: 2.401745e-01	ci right 2.499416e-01	k: 7351	n:30000
KS ci ratio: 1.088110e-01	ci left: 3.920603e-02	ci right 4.374998e-02	k: 1243	n:30000
CD81   30000 perm   6 sec   (5430 perm/sec)   p_kst 4.143333e-02   p_cons 2.450333e-01   p_joint 2.646000e-01

Joint ci ratio: 3.809560e-02	ci left: 2.052972e-01	ci right 2.132950e-01	k: 8371	n:40000
Cons ci ratio: 3.421263e-02	ci left: 2.428542e-01	ci right 2.513325e-01	k: 9883	n:40000
KS ci ratio: 9.443162e-02	ci left: 3.934643e-02	ci right 4.327052e-02	k: 1651	n:40000
CD81   40000 perm   8 sec   (5184 perm/sec)   p_kst 4.127500e-02   p_cons 2.470750e-01   p_joint 2.092750e-01

Outputting figure to mutsig2_images.part000000000034/CD81.2_743_40000_0.041275_0.24707_0.20927.png
                gene_name: CD81
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.041 
        ci_ks_bounds_left: 0.039 
       ci_ks_bounds_right: 0.043 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.21 

Current progress: 70 percent done.
CD8A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.550600e-02	ci left: 2.042211e-01	ci right 2.203469e-01	k: 2122	n:10000
Cons ci ratio: 8.938381e-02	ci left: 1.540423e-01	ci right 1.685555e-01	k: 1612	n:10000
KS ci ratio: 4.340871e-02	ci left: 4.393171e-01	ci right 4.589126e-01	k: 4491	n:10000
CD8A   10000 perm   1 sec   (6811 perm/sec)   p_kst 4.491000e-01   p_cons 1.612000e-01   p_joint 2.122000e-01

Outputting figure to mutsig2_images.part000000000034/CD8A.2_732_10000_0.4491_0.1612_0.2122.png
                gene_name: CD8A
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 72 percent done.
CD99
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.881972e-02	ci left: 4.949504e-01	ci right 5.146468e-01	k: 5048	n:10000
KS ci ratio: 4.808088e-02	ci left: 3.895819e-01	ci right 4.088768e-01	k: 3992	n:10000
CD99   10000 perm   1 sec   (6877 perm/sec)   p_kst 3.992000e-01   p_cons 5.048000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000034/CD99.2_598_10000_0.3992_0.5048_1.png
                gene_name: CD99
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 74 percent done.
CD99L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.496038e-02	ci left: 7.025094e-01	ci right 7.203673e-01	k: 7115	n:10000
KS ci ratio: 4.652901e-03	ci left: 9.837165e-01	ci right 9.883940e-01	k: 9862	n:10000
CD99L2   10000 perm   1 sec   (6785 perm/sec)   p_kst 9.862000e-01   p_cons 7.115000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000034/CD99L2.2_833_10000_0.9862_0.7115_1.png
                gene_name: CD99L2
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
CDADC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.128017e-02	ci left: 1.485467e-01	ci right 1.628545e-01	k: 1556	n:10000
Cons ci ratio: 9.850717e-02	ci left: 1.299255e-01	ci right 1.434869e-01	k: 1366	n:10000
KS ci ratio: 4.609487e-02	ci left: 4.099023e-01	ci right 4.293446e-01	k: 4196	n:10000
CDADC1   10000 perm   2 sec   (6159 perm/sec)   p_kst 4.196000e-01   p_cons 1.366000e-01   p_joint 1.556000e-01

Outputting figure to mutsig2_images.part000000000034/CDADC1.2_1585_10000_0.4196_0.1366_0.1556.png
                gene_name: CDADC1
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 79 percent done.
CDC14B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.566195e-01	ci left: 1.987038e-02	ci right 2.581208e-02	k: 227	n:10000
Cons ci ratio: 3.733977e-01	ci left: 8.867630e-03	ci right 1.302464e-02	k: 108	n:10000
KS ci ratio: 4.274819e-02	ci left: 4.469008e-01	ci right 4.665244e-01	k: 4567	n:10000
CDC14B   10000 perm   2 sec   (6179 perm/sec)   p_kst 4.567000e-01   p_cons 1.080000e-02   p_joint 2.270000e-02

Joint ci ratio: 1.820756e-01	ci left: 2.058483e-02	ci right 2.475554e-02	k: 452	n:20000
Cons ci ratio: 2.598528e-01	ci left: 9.787930e-03	ci right 1.275672e-02	k: 224	n:20000
KS ci ratio: 3.035217e-02	ci left: 4.477810e-01	ci right 4.616322e-01	k: 9094	n:20000
CDC14B   20000 perm   4 sec   (5377 perm/sec)   p_kst 4.547000e-01   p_cons 1.120000e-02   p_joint 2.260000e-02

Joint ci ratio: 1.491714e-01	ci left: 2.081941e-02	ci right 2.420727e-02	k: 674	n:30000
Cons ci ratio: 2.126491e-01	ci left: 1.000844e-02	ci right 1.242095e-02	k: 335	n:30000
KS ci ratio: 2.497391e-02	ci left: 4.452577e-01	ci right 4.565518e-01	k: 13527	n:30000
CDC14B   30000 perm   6 sec   (5088 perm/sec)   p_kst 4.509000e-01   p_cons 1.116667e-02   p_joint 2.246667e-02

Joint ci ratio: 1.290402e-01	ci left: 2.109311e-02	ci right 2.402677e-02	k: 901	n:40000
Cons ci ratio: 1.835398e-01	ci left: 1.023953e-02	ci right 1.233232e-02	k: 450	n:40000
KS ci ratio: 2.161961e-02	ci left: 4.462148e-01	ci right 4.559923e-01	k: 18044	n:40000
CDC14B   40000 perm   8 sec   (4897 perm/sec)   p_kst 4.511000e-01   p_cons 1.125000e-02   p_joint 2.252500e-02

Joint ci ratio: 1.138014e-01	ci left: 2.185935e-02	ci right 2.451641e-02	k: 1158	n:50000
Cons ci ratio: 1.622458e-01	ci left: 1.060309e-02	ci right 1.249425e-02	k: 576	n:50000
KS ci ratio: 1.931470e-02	ci left: 4.473108e-01	ci right 4.560548e-01	k: 22584	n:50000
CDC14B   50000 perm   11 sec   (4751 perm/sec)   p_kst 4.516800e-01   p_cons 1.152000e-02   p_joint 2.316000e-02

Joint ci ratio: 1.034227e-01	ci left: 2.217268e-02	ci right 2.460706e-02	k: 1402	n:60000
Cons ci ratio: 1.482614e-01	ci left: 1.066224e-02	ci right 1.238550e-02	k: 690	n:60000
KS ci ratio: 1.765853e-02	ci left: 4.469460e-01	ci right 4.549254e-01	k: 27056	n:60000
CDC14B   60000 perm   13 sec   (4618 perm/sec)   p_kst 4.509333e-01   p_cons 1.150000e-02   p_joint 2.336667e-02

Joint ci ratio: 9.568609e-02	ci left: 2.229278e-02	ci right 2.454696e-02	k: 1638	n:70000
Cons ci ratio: 1.371919e-01	ci left: 1.073712e-02	ci right 1.233233e-02	k: 806	n:70000
KS ci ratio: 1.637434e-02	ci left: 4.464666e-01	ci right 4.538518e-01	k: 31511	n:70000
CDC14B   70000 perm   16 sec   (4515 perm/sec)   p_kst 4.501571e-01   p_cons 1.151429e-02   p_joint 2.340000e-02

Joint ci ratio: 8.970608e-02	ci left: 2.226571e-02	ci right 2.436905e-02	k: 1864	n:80000
Cons ci ratio: 1.295653e-01	ci left: 1.057907e-02	ci right 1.205669e-02	k: 904	n:80000
KS ci ratio: 1.532673e-02	ci left: 4.463858e-01	ci right 4.532928e-01	k: 35987	n:80000
CDC14B   80000 perm   18 sec   (4396 perm/sec)   p_kst 4.498375e-01   p_cons 1.130000e-02   p_joint 2.330000e-02

Joint ci ratio: 1.014026e-01	ci left: 1.550445e-02	ci right 1.717138e-02	k: 1469	n:90000
Cons ci ratio: 1.225287e-01	ci left: 1.055503e-02	ci right 1.194341e-02	k: 1011	n:90000
KS ci ratio: 1.443931e-02	ci left: 4.469568e-01	ci right 4.534686e-01	k: 40519	n:90000
CDC14B   90000 perm   21 sec   (4312 perm/sec)   p_kst 4.502111e-01   p_cons 1.123333e-02   p_joint 1.632222e-02

Joint ci ratio: 9.620898e-02	ci left: 1.554375e-02	ci right 1.712448e-02	k: 1632	n:100000
Cons ci ratio: 1.166321e-01	ci left: 1.051812e-02	ci right 1.183047e-02	k: 1116	n:100000
KS ci ratio: 1.372110e-02	ci left: 4.463034e-01	ci right 4.524795e-01	k: 44939	n:100000
CDC14B   100000 perm   24 sec   (4232 perm/sec)   p_kst 4.493900e-01   p_cons 1.116000e-02   p_joint 1.632000e-02

Joint ci ratio: 9.135244e-02	ci left: 1.571099e-02	ci right 1.722375e-02	k: 1810	n:110000
Cons ci ratio: 1.110081e-01	ci left: 1.058648e-02	ci right 1.183950e-02	k: 1232	n:110000
KS ci ratio: 1.308328e-02	ci left: 4.464209e-01	ci right 4.523091e-01	k: 49430	n:110000
CDC14B   110000 perm   26 sec   (4155 perm/sec)   p_kst 4.493636e-01   p_cons 1.120000e-02   p_joint 1.645455e-02

Joint ci ratio: 8.765834e-02	ci left: 1.567263e-02	ci right 1.711755e-02	k: 1966	n:120000
Cons ci ratio: 1.066877e-01	ci left: 1.053112e-02	ci right 1.172602e-02	k: 1334	n:120000
KS ci ratio: 1.251273e-02	ci left: 4.470823e-01	ci right 4.527201e-01	k: 53988	n:120000
CDC14B   120000 perm   29 sec   (4083 perm/sec)   p_kst 4.499000e-01   p_cons 1.111667e-02   p_joint 1.638333e-02

Joint ci ratio: 8.354274e-02	ci left: 1.595762e-02	ci right 1.735637e-02	k: 2164	n:130000
Cons ci ratio: 1.016615e-01	ci left: 1.073250e-02	ci right 1.188946e-02	k: 1469	n:130000
KS ci ratio: 1.201812e-02	ci left: 4.473468e-01	ci right 4.527632e-01	k: 58507	n:130000
CDC14B   130000 perm   32 sec   (4010 perm/sec)   p_kst 4.500538e-01   p_cons 1.130000e-02   p_joint 1.664615e-02

Joint ci ratio: 8.032076e-02	ci left: 1.605621e-02	ci right 1.740677e-02	k: 2341	n:140000
Cons ci ratio: 9.799718e-02	ci left: 1.074592e-02	ci right 1.186017e-02	k: 1581	n:140000
KS ci ratio: 1.159912e-02	ci left: 4.466705e-01	ci right 4.518888e-01	k: 62899	n:140000
CDC14B   140000 perm   36 sec   (3941 perm/sec)   p_kst 4.492786e-01   p_cons 1.129286e-02   p_joint 1.672143e-02

Outputting figure to mutsig2_images.part000000000034/CDC14B.2_1606_140000_0.44928_0.011293_0.016721.png
                gene_name: CDC14B
               theta_stop: 0.098 
                    nperm: 140000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.011 
      ci_cons_bounds_left: 0.011 
     ci_cons_bounds_right: 0.012 
                  p_joint: 0.017 
     ci_joint_bounds_left: 0.016 
    ci_joint_bounds_right: 0.017 

Current progress: 81 percent done.
CDC25B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.843345e-02	ci left: 4.999504e-01	ci right 5.196439e-01	k: 5098	n:10000
KS ci ratio: 3.325811e-02	ci left: 5.716584e-01	ci right 5.910942e-01	k: 5814	n:10000
CDC25B   10000 perm   2 sec   (6009 perm/sec)   p_kst 5.814000e-01   p_cons 5.098000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000034/CDC25B.2_1807_10000_0.5814_0.5098_1.png
                gene_name: CDC25B
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
CDC37
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.157851e-02	ci left: 4.606770e-01	ci right 4.803401e-01	k: 4705	n:10000
Cons ci ratio: 3.130776e-02	ci left: 6.008614e-01	ci right 6.200742e-01	k: 6105	n:10000
KS ci ratio: 7.275060e-02	ci left: 2.167479e-01	ci right 2.332127e-01	k: 2249	n:10000
CDC37   10000 perm   2 sec   (6372 perm/sec)   p_kst 2.249000e-01   p_cons 6.105000e-01   p_joint 4.705000e-01

Outputting figure to mutsig2_images.part000000000034/CDC37.2_1169_10000_0.2249_0.6105_0.4705.png
                gene_name: CDC37
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 85 percent done.
CDC40
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.045373e-02	ci left: 2.869643e-01	ci right 3.049547e-01	k: 2959	n:10000
Cons ci ratio: 1.091704e-01	ci left: 1.079317e-01	ci right 1.204941e-01	k: 1141	n:10000
KS ci ratio: 4.878967e-02	ci left: 3.826132e-01	ci right 4.018496e-01	k: 3922	n:10000
CDC40   10000 perm   2 sec   (6004 perm/sec)   p_kst 3.922000e-01   p_cons 1.141000e-01   p_joint 2.959000e-01

Joint ci ratio: 6.897111e-02	ci left: 1.342332e-01	ci right 1.438720e-01	k: 2780	n:20000
Cons ci ratio: 5.908098e-02	ci left: 1.750432e-01	ci right 1.857498e-01	k: 3607	n:20000
KS ci ratio: 3.444505e-02	ci left: 3.862220e-01	ci right 3.998091e-01	k: 7860	n:20000
CDC40   20000 perm   4 sec   (5266 perm/sec)   p_kst 3.930000e-01   p_cons 1.803500e-01   p_joint 1.390000e-01

Outputting figure to mutsig2_images.part000000000034/CDC40.2_1800_20000_0.393_0.18035_0.139.png
                gene_name: CDC40
               theta_stop: 0.069 
                    nperm: 20000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 87 percent done.
CDCA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.130045e-02	ci left: 2.237558e-01	ci right 2.404006e-01	k: 2320	n:10000
Cons ci ratio: 1.103187e-01	ci left: 1.058826e-01	ci right 1.183444e-01	k: 1120	n:10000
KS ci ratio: 7.144074e-02	ci left: 2.230647e-01	ci right 2.396920e-01	k: 2313	n:10000
CDCA2   10000 perm   2 sec   (4955 perm/sec)   p_kst 2.313000e-01   p_cons 1.120000e-01   p_joint 2.320000e-01

Joint ci ratio: 6.983390e-02	ci left: 1.313267e-01	ci right 1.408794e-01	k: 2721	n:20000
Cons ci ratio: 7.761917e-02	ci left: 1.086930e-01	ci right 1.175199e-01	k: 2261	n:20000
KS ci ratio: 5.058072e-02	ci left: 2.250741e-01	ci right 2.368042e-01	k: 4618	n:20000
CDCA2   20000 perm   4 sec   (4533 perm/sec)   p_kst 2.309000e-01   p_cons 1.130500e-01   p_joint 1.360500e-01

Outputting figure to mutsig2_images.part000000000034/CDCA2.2_3128_20000_0.2309_0.11305_0.13605.png
                gene_name: CDCA2
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 89 percent done.
CDCA7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.111580e-01	ci left: 1.044194e-01	ci right 1.168085e-01	k: 1105	n:10000
Cons ci ratio: 8.732659e-02	ci left: 1.603269e-01	ci right 1.750672e-01	k: 1676	n:10000
KS ci ratio: 1.514271e-01	ci left: 5.802650e-02	ci right 6.763012e-02	k: 627	n:10000
CDCA7   10000 perm   2 sec   (6509 perm/sec)   p_kst 6.270000e-02   p_cons 1.676000e-01   p_joint 1.105000e-01

Joint ci ratio: 4.038318e-02	ci left: 3.137355e-01	ci right 3.267168e-01	k: 6404	n:20000
Cons ci ratio: 6.160676e-02	ci left: 1.631384e-01	ci right 1.735582e-01	k: 3366	n:20000
KS ci ratio: 1.064011e-01	ci left: 6.015897e-02	ci right 6.696859e-02	k: 1270	n:20000
CDCA7   20000 perm   4 sec   (5670 perm/sec)   p_kst 6.350000e-02   p_cons 1.683000e-01   p_joint 3.202000e-01

Joint ci ratio: 2.800569e-02	ci left: 3.894952e-01	ci right 4.005918e-01	k: 11851	n:30000
Cons ci ratio: 5.003712e-02	ci left: 1.655668e-01	ci right 1.740972e-01	k: 5094	n:30000
KS ci ratio: 8.546140e-02	ci left: 6.272590e-02	ci right 6.835860e-02	k: 1965	n:30000
CDCA7   30000 perm   6 sec   (5376 perm/sec)   p_kst 6.550000e-02   p_cons 1.698000e-01   p_joint 3.950333e-01

Outputting figure to mutsig2_images.part000000000034/CDCA7.2_1393_30000_0.0655_0.1698_0.39503.png
                gene_name: CDCA7
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.066 
        ci_ks_bounds_left: 0.063 
       ci_ks_bounds_right: 0.068 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.40 

Current progress: 91 percent done.
CDCA7L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.314008e-03	ci left: 9.911641e-01	ci right 9.945392e-01	k: 9930	n:10000
Cons ci ratio: 6.886859e-02	ci left: 2.362004e-01	ci right 2.531486e-01	k: 2446	n:10000
KS ci ratio: 6.227196e-02	ci left: 2.748786e-01	ci right 2.926475e-01	k: 2837	n:10000
CDCA7L   10000 perm   2 sec   (6615 perm/sec)   p_kst 2.837000e-01   p_cons 2.446000e-01   p_joint 9.930000e-01

Outputting figure to mutsig2_images.part000000000034/CDCA7L.2_1405_10000_0.2837_0.2446_0.993.png
                gene_name: CDCA7L
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 94 percent done.
CDH15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.107050e-02	ci left: 9.209006e-01	ci right 9.312496e-01	k: 9262	n:10000
KS ci ratio: 2.351896e-02	ci left: 7.265354e-01	ci right 7.439273e-01	k: 7353	n:10000
CDH15   10000 perm   2 sec   (5272 perm/sec)   p_kst 7.353000e-01   p_cons 9.262000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000034/CDH15.2_2501_10000_0.7353_0.9262_1.png
                gene_name: CDH15
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
CDH17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.304874e-02	ci left: 8.942609e-01	ci right 9.061049e-01	k: 9003	n:10000
Cons ci ratio: 1.902955e-02	ci left: 8.014606e-01	ci right 8.169589e-01	k: 8093	n:10000
KS ci ratio: 3.109098e-02	ci left: 6.041754e-01	ci right 6.233583e-01	k: 6138	n:10000
CDH17   10000 perm   2 sec   (5275 perm/sec)   p_kst 6.138000e-01   p_cons 8.093000e-01   p_joint 9.003000e-01

Outputting figure to mutsig2_images.part000000000034/CDH17.2_2567_10000_0.6138_0.8093_0.9003.png
                gene_name: CDH17
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.91 

Current progress: 98 percent done.
CDH22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.698429e-02	ci left: 2.464796e-01	ci right 2.636633e-01	k: 2550	n:10000
KS ci ratio: 5.244895e-02	ci left: 3.488943e-01	ci right 3.677882e-01	k: 3583	n:10000
CDH22   10000 perm   2 sec   (6035 perm/sec)   p_kst 3.583000e-01   p_cons 2.550000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000034/CDH22.2_2531_10000_0.3583_0.255_1.png
                gene_name: CDH22
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000034
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 34 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1421>
Subject: Job 8003951: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1421>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000035> was used as the working directory.
Started at Sun Nov 11 17:09:01 2012
Results reported at Sun Nov 11 20:47:39 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000035.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000035.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 35  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000035.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  21715.70 sec.
    Max Memory :      9550 MB
    Max Swap   :     11886 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
35
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 35
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 35: processing genes 3077 - 3166
Calculating significance of each gene.
Using projection method.
3077	CDH26	4.019920e-01
3078	CDH3	9.275162e-01
3079	CDH4	6.107415e-01
3080	CDH5	1
3081	CDH6	8.997498e-01
3082	CDH7	2.185000e-01
3083	CDH8	4.717992e-01
3084	CDH9	7.795495e-01
3085	CDHR1	9.701601e-01
3086	CDHR2	6.541886e-01
3087	CDHR3	6.633238e-01
3088	CDHR5	9.024998e-01
3089	CDIPT	1
3090	CDK1	1.597822e-01
3091	CDK10	7.352551e-01
3092	CDK11A	1
3093	CDK11B	5.754170e-01
3094	CDK12	1
3095	CDK13	7.055661e-01
3096	CDK14	1
3097	CDK15	8.114301e-02
3098	CDK16	7.448351e-01
3099	CDK17	2.286459e-01
3100	CDK18	1
3101	CDK19	7.410664e-01
3102	CDK2	1
3103	CDK20	4.505447e-01
3104	CDK2AP1	1.190404e-01
3105	CDK2AP2	1.005853e-01
3106	CDK3	1
3107	CDK4	1
3108	CDK5	5.611706e-01
3109	CDK5R1	5.334063e-01
3110	CDK5R2	1
3111	CDK5RAP1	1
3112	CDK5RAP2	9.407534e-01
3113	CDK5RAP3	5.596648e-01
3114	CDK6	1
3115	CDK7	6.279767e-01
3116	CDK8	2.721150e-01
3117	CDK9	1
3118	CDKAL1	7.202705e-02
3119	CDKL1	1
3120	CDKL2	6.381646e-01
3121	CDKL3	7.777949e-01
3122	CDKL4	3.354497e-01
3123	CDKL5	7.643537e-01
3124	CDKN1A	1.491942e-01
3125	CDKN1B	1
3126	CDKN2A	4.996004e-15
3127	CDKN2AIP	1
3128	CDKN2AIPNL	1
3129	CDKN2B	4.126101e-01
3130	CDKN2C	3.229724e-01
3131	CDKN2D	1
3132	CDKN3	1
3133	CDNF	4.828279e-01
3134	CDO1	1
3135	CDON	8.025473e-01
3136	CDR1	2.946785e-02
3137	CDR2	1
3138	CDRT1	1
3139	CDRT15	1
3140	CDRT4	1
3141	CDS1	4.455639e-01
3142	CDS2	1
3143	CDSN	8.284612e-01
3144	CDT1	1
3145	CDV3	1
3146	CDX1	1
3147	CDX2	1.087789e-02
3148	CDX4	1.432040e-01
3149	CDYL	8.402134e-01
3150	CDYL2	1.434019e-01
3151	CEACAM1	1
3152	CEACAM16	1
3153	CEACAM18	6.197647e-01
3154	CEACAM19	4.167072e-01
3155	CEACAM20	1
3156	CEACAM21	5.863266e-01
3157	CEACAM3	3.483085e-01
3158	CEACAM4	2.096550e-01
3159	CEACAM5	1
3160	CEACAM6	8.940293e-02
3161	CEACAM7	3.232378e-01
3162	CEACAM8	2.150588e-01
3163	CEBPB	1
3164	CEBPD	1
3165	CEBPE	6.080881e-01
3166	CEBPG	1
Done

Running MutSig 2:
Scatter job 35: processing genes 3077 - 3166
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CDKN2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.823649e-01	ci left: 8.414755e-03	ci right 1.247803e-02	k: 103	n:10000
Cons ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
KS ci ratio: 8.544729e-01	ci left: 1.222067e-03	ci right 3.087156e-03	k: 20	n:10000
CDKN2A   10000 perm   3 sec   (3933 perm/sec)   p_kst 2.000000e-03   p_cons 1.000000e-04   p_joint 1.030000e-02

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 2.771651e+00	ci left: 1.265890e-06	ci right 2.785503e-04	k: 1	n:20000
KS ci ratio: 6.620044e-01	ci left: 1.177578e-03	ci right 2.374777e-03	k: 34	n:20000
CDKN2A   20000 perm   9 sec   (2330 perm/sec)   p_kst 1.700000e-03   p_cons 5.000000e-05   p_joint 0

Joint ci ratio: 3.919869e+00	ci left: 0	ci right 1.229551e-04	k: 0	n:30000
Cons ci ratio: 2.771720e+00	ci left: 8.439266e-07	ci right 1.857073e-04	k: 1	n:30000
KS ci ratio: 5.839110e-01	ci left: 1.065878e-03	ci right 1.968437e-03	k: 44	n:30000
CDKN2A   30000 perm   12 sec   (2573 perm/sec)   p_kst 1.466667e-03   p_cons 3.333333e-05   p_joint 0

Joint ci ratio: 3.919902e+00	ci left: 0	ci right 9.221773e-05	k: 0	n:40000
Cons ci ratio: 2.771755e+00	ci left: 6.329450e-07	ci right 1.392831e-04	k: 1	n:40000
KS ci ratio: 5.056838e-01	ci left: 1.123022e-03	ci right 1.902236e-03	k: 59	n:40000
CDKN2A   40000 perm   15 sec   (2716 perm/sec)   p_kst 1.475000e-03   p_cons 2.500000e-05   p_joint 0

Joint ci ratio: 3.919922e+00	ci left: 0	ci right 7.377487e-05	k: 0	n:50000
Cons ci ratio: 2.771775e+00	ci left: 5.063560e-07	ci right 1.114278e-04	k: 1	n:50000
KS ci ratio: 4.325322e-01	ci left: 1.286716e-03	ci right 2.013116e-03	k: 81	n:50000
CDKN2A   50000 perm   18 sec   (2796 perm/sec)   p_kst 1.620000e-03   p_cons 2.000000e-05   p_joint 0

Joint ci ratio: 3.919935e+00	ci left: 0	ci right 6.147943e-05	k: 0	n:60000
Cons ci ratio: 2.771789e+00	ci left: 4.219634e-07	ci right 9.285719e-05	k: 1	n:60000
KS ci ratio: 4.106125e-01	ci left: 1.206344e-03	ci right 1.843438e-03	k: 90	n:60000
CDKN2A   60000 perm   21 sec   (2840 perm/sec)   p_kst 1.500000e-03   p_cons 1.666667e-05   p_joint 0

Joint ci ratio: 3.919944e+00	ci left: 0	ci right 5.269689e-05	k: 0	n:70000
Cons ci ratio: 2.771799e+00	ci left: 3.616829e-07	ci right 7.959231e-05	k: 1	n:70000
KS ci ratio: 3.701061e-01	ci left: 1.304650e-03	ci right 1.909300e-03	k: 111	n:70000
CDKN2A   70000 perm   25 sec   (2849 perm/sec)   p_kst 1.585714e-03   p_cons 1.428571e-05   p_joint 0

Joint ci ratio: 3.919951e+00	ci left: 0	ci right 4.610993e-05	k: 0	n:80000
Cons ci ratio: 2.771807e+00	ci left: 3.164725e-07	ci right 6.964355e-05	k: 1	n:80000
KS ci ratio: 3.489441e-01	ci left: 1.300773e-03	ci right 1.861370e-03	k: 125	n:80000
CDKN2A   80000 perm   28 sec   (2856 perm/sec)   p_kst 1.562500e-03   p_cons 1.250000e-05   p_joint 0

Joint ci ratio: 3.919956e+00	ci left: 0	ci right 4.098671e-05	k: 0	n:90000
Cons ci ratio: 2.771812e+00	ci left: 2.813089e-07	ci right 6.190558e-05	k: 1	n:90000
KS ci ratio: 3.219552e-01	ci left: 1.380140e-03	ci right 1.919465e-03	k: 147	n:90000
CDKN2A   90000 perm   32 sec   (2857 perm/sec)   p_kst 1.633333e-03   p_cons 1.111111e-05   p_joint 0

Joint ci ratio: 3.919961e+00	ci left: 0	ci right 3.688811e-05	k: 0	n:100000
Cons ci ratio: 2.771817e+00	ci left: 2.531780e-07	ci right 5.571516e-05	k: 1	n:100000
KS ci ratio: 3.049182e-01	ci left: 1.398766e-03	ci right 1.910836e-03	k: 164	n:100000
CDKN2A   100000 perm   35 sec   (2849 perm/sec)   p_kst 1.640000e-03   p_cons 1.000000e-05   p_joint 0

Joint ci ratio: 3.919964e+00	ci left: 0	ci right 3.353471e-05	k: 0	n:110000
Cons ci ratio: 2.771821e+00	ci left: 2.301619e-07	ci right 5.065025e-05	k: 1	n:110000
KS ci ratio: 2.903279e-01	ci left: 1.414620e-03	ci right 1.903167e-03	k: 181	n:110000
CDKN2A   110000 perm   39 sec   (2837 perm/sec)   p_kst 1.645455e-03   p_cons 9.090909e-06   p_joint 0

Joint ci ratio: 3.919967e+00	ci left: 0	ci right 3.074019e-05	k: 0	n:120000
Cons ci ratio: 2.771824e+00	ci left: 2.109817e-07	ci right 4.642948e-05	k: 1	n:120000
KS ci ratio: 2.812108e-01	ci left: 1.389567e-03	ci right 1.851721e-03	k: 193	n:120000
CDKN2A   120000 perm   43 sec   (2822 perm/sec)   p_kst 1.608333e-03   p_cons 8.333333e-06   p_joint 0

Joint ci ratio: 3.919970e+00	ci left: 0	ci right 2.837559e-05	k: 0	n:130000
Cons ci ratio: 2.771827e+00	ci left: 1.947524e-07	ci right 4.285804e-05	k: 1	n:130000
KS ci ratio: 2.677440e-01	ci left: 1.425945e-03	ci right 1.873679e-03	k: 213	n:130000
CDKN2A   130000 perm   46 sec   (2803 perm/sec)   p_kst 1.638462e-03   p_cons 7.692308e-06   p_joint 0

Joint ci ratio: 3.919972e+00	ci left: 0	ci right 2.634879e-05	k: 0	n:140000
Cons ci ratio: 2.771829e+00	ci left: 1.808415e-07	ci right 3.979680e-05	k: 1	n:140000
KS ci ratio: 2.560433e-01	ci left: 1.457578e-03	ci right 1.892051e-03	k: 233	n:140000
CDKN2A   140000 perm   50 sec   (2782 perm/sec)   p_kst 1.664286e-03   p_cons 7.142857e-06   p_joint 0

Joint ci ratio: 3.919974e+00	ci left: 0	ci right 2.459223e-05	k: 0	n:150000
Cons ci ratio: 2.771831e+00	ci left: 1.687854e-07	ci right 3.714372e-05	k: 1	n:150000
KS ci ratio: 2.507473e-01	ci left: 1.422836e-03	ci right 1.836811e-03	k: 243	n:150000
CDKN2A   150000 perm   54 sec   (2759 perm/sec)   p_kst 1.620000e-03   p_cons 6.666667e-06   p_joint 0

Joint ci ratio: 3.919976e+00	ci left: 0	ci right 2.305523e-05	k: 0	n:160000
Cons ci ratio: 2.771833e+00	ci left: 1.582363e-07	ci right 3.482227e-05	k: 1	n:160000
KS ci ratio: 2.406034e-01	ci left: 1.457085e-03	ci right 1.861317e-03	k: 264	n:160000
CDKN2A   160000 perm   59 sec   (2735 perm/sec)   p_kst 1.650000e-03   p_cons 6.250000e-06   p_joint 0

Joint ci ratio: 3.919977e+00	ci left: 0	ci right 2.169906e-05	k: 0	n:170000
Cons ci ratio: 2.771834e+00	ci left: 1.489283e-07	ci right 3.277393e-05	k: 1	n:170000
KS ci ratio: 2.332382e-01	ci left: 1.465440e-03	ci right 1.857751e-03	k: 281	n:170000
CDKN2A   170000 perm   63 sec   (2710 perm/sec)   p_kst 1.652941e-03   p_cons 5.882353e-06   p_joint 0

Joint ci ratio: 3.919978e+00	ci left: 0	ci right 2.049356e-05	k: 0	n:180000
Cons ci ratio: 2.771835e+00	ci left: 1.406545e-07	ci right 3.095318e-05	k: 1	n:180000
KS ci ratio: 2.288217e-01	ci left: 1.441599e-03	ci right 1.819188e-03	k: 292	n:180000
CDKN2A   180000 perm   67 sec   (2685 perm/sec)   p_kst 1.622222e-03   p_cons 5.555556e-06   p_joint 0

Joint ci ratio: 3.919979e+00	ci left: 0	ci right 1.941497e-05	k: 0	n:190000
Cons ci ratio: 2.771837e+00	ci left: 1.332516e-07	ci right 2.932409e-05	k: 1	n:190000
KS ci ratio: 2.228190e-01	ci left: 1.445173e-03	ci right 1.812406e-03	k: 308	n:190000
CDKN2A   190000 perm   71 sec   (2659 perm/sec)   p_kst 1.621053e-03   p_cons 5.263158e-06   p_joint 0

Joint ci ratio: 3.919980e+00	ci left: 0	ci right 1.844423e-05	k: 0	n:200000
Cons ci ratio: 2.771838e+00	ci left: 1.265890e-07	ci right 2.785790e-05	k: 1	n:200000
KS ci ratio: 2.156103e-01	ci left: 1.472153e-03	ci right 1.832538e-03	k: 329	n:200000
CDKN2A   200000 perm   76 sec   (2633 perm/sec)   p_kst 1.645000e-03   p_cons 5.000000e-06   p_joint 0

Joint ci ratio: 3.919981e+00	ci left: 0	ci right 1.756594e-05	k: 0	n:210000
Cons ci ratio: 2.771839e+00	ci left: 1.205610e-07	ci right 2.653135e-05	k: 1	n:210000
KS ci ratio: 2.105663e-01	ci left: 1.474176e-03	ci right 1.825524e-03	k: 345	n:210000
CDKN2A   210000 perm   81 sec   (2608 perm/sec)   p_kst 1.642857e-03   p_cons 4.761905e-06   p_joint 0

Joint ci ratio: 3.919982e+00	ci left: 0	ci right 1.676749e-05	k: 0	n:220000
Cons ci ratio: 2.771840e+00	ci left: 1.150809e-07	ci right 2.532539e-05	k: 1	n:220000
KS ci ratio: 2.064326e-01	ci left: 1.467481e-03	ci right 1.809501e-03	k: 359	n:220000
CDKN2A   220000 perm   85 sec   (2583 perm/sec)   p_kst 1.631818e-03   p_cons 4.545455e-06   p_joint 0

Joint ci ratio: 3.919983e+00	ci left: 0	ci right 1.603848e-05	k: 0	n:230000
Cons ci ratio: 2.771841e+00	ci left: 1.100774e-07	ci right 2.422430e-05	k: 1	n:230000
KS ci ratio: 2.036267e-01	ci left: 1.444922e-03	ci right 1.776537e-03	k: 369	n:230000
CDKN2A   230000 perm   90 sec   (2557 perm/sec)   p_kst 1.604348e-03   p_cons 4.347826e-06   p_joint 0

Joint ci ratio: 3.919984e+00	ci left: 0	ci right 1.537021e-05	k: 0	n:240000
Cons ci ratio: 2.263194e+00	ci left: 1.009207e-06	ci right 3.010254e-05	k: 2	n:240000
KS ci ratio: 1.993618e-01	ci left: 1.448020e-03	ci right 1.772540e-03	k: 385	n:240000
CDKN2A   240000 perm   95 sec   (2531 perm/sec)   p_kst 1.604167e-03   p_cons 8.333333e-06   p_joint 0

Joint ci ratio: 3.919984e+00	ci left: 0	ci right 1.475541e-05	k: 0	n:250000
Cons ci ratio: 2.263195e+00	ci left: 9.688386e-07	ci right 2.889845e-05	k: 2	n:250000
KS ci ratio: 1.943879e-01	ci left: 1.466158e-03	ci right 1.785575e-03	k: 405	n:250000
CDKN2A   250000 perm   100 sec   (2507 perm/sec)   p_kst 1.620000e-03   p_cons 8.000000e-06   p_joint 0

Joint ci ratio: 3.919985e+00	ci left: 0	ci right 1.418790e-05	k: 0	n:260000
Cons ci ratio: 2.263196e+00	ci left: 9.315755e-07	ci right 2.778698e-05	k: 2	n:260000
KS ci ratio: 1.904415e-01	ci left: 1.472003e-03	ci right 1.785429e-03	k: 422	n:260000
CDKN2A   260000 perm   105 sec   (2483 perm/sec)   p_kst 1.623077e-03   p_cons 7.692308e-06   p_joint 0

Joint ci ratio: 3.919985e+00	ci left: 0	ci right 1.366242e-05	k: 0	n:270000
Cons ci ratio: 2.263196e+00	ci left: 8.970727e-07	ci right 2.675784e-05	k: 2	n:270000
KS ci ratio: 1.875820e-01	ci left: 1.463353e-03	ci right 1.769726e-03	k: 435	n:270000
CDKN2A   270000 perm   110 sec   (2459 perm/sec)   p_kst 1.611111e-03   p_cons 7.407407e-06   p_joint 0

Joint ci ratio: 3.919986e+00	ci left: 0	ci right 1.317448e-05	k: 0	n:280000
Cons ci ratio: 2.263197e+00	ci left: 8.650343e-07	ci right 2.580222e-05	k: 2	n:280000
KS ci ratio: 1.836227e-01	ci left: 1.475796e-03	ci right 1.777527e-03	k: 454	n:280000
CDKN2A   280000 perm   115 sec   (2435 perm/sec)   p_kst 1.621429e-03   p_cons 7.142857e-06   p_joint 0

Joint ci ratio: 3.919986e+00	ci left: 0	ci right 1.272019e-05	k: 0	n:290000
Cons ci ratio: 2.263197e+00	ci left: 8.352055e-07	ci right 2.491249e-05	k: 2	n:290000
KS ci ratio: 1.791485e-01	ci left: 1.500618e-03	ci right 1.799138e-03	k: 477	n:290000
CDKN2A   290000 perm   120 sec   (2410 perm/sec)   p_kst 1.644828e-03   p_cons 6.896552e-06   p_joint 0

Joint ci ratio: 3.919987e+00	ci left: 0	ci right 1.229619e-05	k: 0	n:300000
Cons ci ratio: 2.263198e+00	ci left: 8.073653e-07	ci right 2.408208e-05	k: 2	n:300000
KS ci ratio: 1.764025e-01	ci left: 1.498373e-03	ci right 1.791389e-03	k: 492	n:300000
CDKN2A   300000 perm   126 sec   (2387 perm/sec)   p_kst 1.640000e-03   p_cons 6.666667e-06   p_joint 0

Joint ci ratio: 3.919987e+00	ci left: 0	ci right 1.189954e-05	k: 0	n:310000
Cons ci ratio: 2.263198e+00	ci left: 7.813212e-07	ci right 2.330525e-05	k: 2	n:310000
KS ci ratio: 1.746420e-01	ci left: 1.480878e-03	ci right 1.767278e-03	k: 502	n:310000
CDKN2A   310000 perm   131 sec   (2363 perm/sec)   p_kst 1.619355e-03   p_cons 6.451613e-06   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.152768e-05	k: 0	n:320000
Cons ci ratio: 2.263199e+00	ci left: 7.569049e-07	ci right 2.257696e-05	k: 2	n:320000
KS ci ratio: 1.714335e-01	ci left: 1.491405e-03	ci right 1.773994e-03	k: 521	n:320000
CDKN2A   320000 perm   137 sec   (2341 perm/sec)   p_kst 1.628125e-03   p_cons 6.250000e-06   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.117836e-05	k: 0	n:330000
Cons ci ratio: 2.263199e+00	ci left: 7.339684e-07	ci right 2.189282e-05	k: 2	n:330000
KS ci ratio: 1.676214e-01	ci left: 1.515854e-03	ci right 1.796044e-03	k: 545	n:330000
CDKN2A   330000 perm   142 sec   (2319 perm/sec)   p_kst 1.651515e-03   p_cons 6.060606e-06   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.084959e-05	k: 0	n:340000
Cons ci ratio: 2.263200e+00	ci left: 7.123810e-07	ci right 2.124892e-05	k: 2	n:340000
KS ci ratio: 1.641971e-01	ci left: 1.536110e-03	ci right 1.813671e-03	k: 568	n:340000
CDKN2A   340000 perm   148 sec   (2296 perm/sec)   p_kst 1.670588e-03   p_cons 5.882353e-06   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 1.053960e-05	k: 0	n:350000
Cons ci ratio: 2.263200e+00	ci left: 6.920273e-07	ci right 2.064181e-05	k: 2	n:350000
KS ci ratio: 1.615220e-01	ci left: 1.544295e-03	ci right 1.818347e-03	k: 587	n:350000
CDKN2A   350000 perm   154 sec   (2273 perm/sec)   p_kst 1.677143e-03   p_cons 5.714286e-06   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 1.024683e-05	k: 0	n:360000
Cons ci ratio: 2.263200e+00	ci left: 6.728043e-07	ci right 2.006843e-05	k: 2	n:360000
KS ci ratio: 1.598997e-01	ci left: 1.533390e-03	ci right 1.802511e-03	k: 599	n:360000
CDKN2A   360000 perm   160 sec   (2250 perm/sec)   p_kst 1.663889e-03   p_cons 5.555556e-06   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 9.969895e-06	k: 0	n:370000
Cons ci ratio: 2.263201e+00	ci left: 6.546203e-07	ci right 1.952605e-05	k: 2	n:370000
KS ci ratio: 1.569190e-01	ci left: 1.551646e-03	ci right 1.818418e-03	k: 622	n:370000
CDKN2A   370000 perm   166 sec   (2228 perm/sec)   p_kst 1.681081e-03   p_cons 5.405405e-06   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.707530e-06	k: 0	n:380000
Cons ci ratio: 2.263201e+00	ci left: 6.373935e-07	ci right 1.901221e-05	k: 2	n:380000
KS ci ratio: 1.555530e-01	ci left: 1.538628e-03	ci right 1.800644e-03	k: 633	n:380000
CDKN2A   380000 perm   172 sec   (2207 perm/sec)   p_kst 1.665789e-03   p_cons 5.263158e-06   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.458621e-06	k: 0	n:390000
Cons ci ratio: 2.263201e+00	ci left: 6.210500e-07	ci right 1.852472e-05	k: 2	n:390000
KS ci ratio: 1.532728e-01	ci left: 1.546012e-03	ci right 1.805072e-03	k: 652	n:390000
CDKN2A   390000 perm   178 sec   (2186 perm/sec)   p_kst 1.671795e-03   p_cons 5.128205e-06   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.222156e-06	k: 0	n:400000
Cons ci ratio: 2.263202e+00	ci left: 6.055238e-07	ci right 1.806160e-05	k: 2	n:400000
KS ci ratio: 1.514290e-01	ci left: 1.545837e-03	ci right 1.801469e-03	k: 668	n:400000
CDKN2A   400000 perm   185 sec   (2165 perm/sec)   p_kst 1.670000e-03   p_cons 5.000000e-06   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 8.997226e-06	k: 0	n:410000
Cons ci ratio: 2.263202e+00	ci left: 5.907549e-07	ci right 1.762108e-05	k: 2	n:410000
KS ci ratio: 1.499795e-01	ci left: 1.538645e-03	ci right 1.790433e-03	k: 681	n:410000
CDKN2A   410000 perm   191 sec   (2146 perm/sec)   p_kst 1.660976e-03   p_cons 4.878049e-06   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.783008e-06	k: 0	n:420000
Cons ci ratio: 2.263202e+00	ci left: 5.766893e-07	ci right 1.720153e-05	k: 2	n:420000
KS ci ratio: 1.480384e-01	ci left: 1.543270e-03	ci right 1.792257e-03	k: 699	n:420000
CDKN2A   420000 perm   198 sec   (2126 perm/sec)   p_kst 1.664286e-03   p_cons 4.761905e-06   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.578753e-06	k: 0	n:430000
Cons ci ratio: 2.263203e+00	ci left: 5.632779e-07	ci right 1.680150e-05	k: 2	n:430000
KS ci ratio: 1.458658e-01	ci left: 1.554422e-03	ci right 1.801208e-03	k: 720	n:430000
CDKN2A   430000 perm   204 sec   (2107 perm/sec)   p_kst 1.674419e-03   p_cons 4.651163e-06   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.383782e-06	k: 0	n:440000
Cons ci ratio: 2.263203e+00	ci left: 5.504761e-07	ci right 1.641965e-05	k: 2	n:440000
KS ci ratio: 1.439807e-01	ci left: 1.560711e-03	ci right 1.805017e-03	k: 739	n:440000
CDKN2A   440000 perm   211 sec   (2088 perm/sec)   p_kst 1.679545e-03   p_cons 4.545455e-06   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.197476e-06	k: 0	n:450000
Cons ci ratio: 2.263203e+00	ci left: 5.382433e-07	ci right 1.605477e-05	k: 2	n:450000
KS ci ratio: 1.420731e-01	ci left: 1.568883e-03	ci right 1.810939e-03	k: 759	n:450000
CDKN2A   450000 perm   218 sec   (2069 perm/sec)   p_kst 1.686667e-03   p_cons 4.444444e-06   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.019271e-06	k: 0	n:460000
Cons ci ratio: 2.263203e+00	ci left: 5.265423e-07	ci right 1.570575e-05	k: 2	n:460000
KS ci ratio: 1.401494e-01	ci left: 1.578818e-03	ci right 1.818833e-03	k: 780	n:460000
CDKN2A   460000 perm   224 sec   (2050 perm/sec)   p_kst 1.695652e-03   p_cons 4.347826e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.848649e-06	k: 0	n:470000
Cons ci ratio: 2.263203e+00	ci left: 5.153393e-07	ci right 1.537159e-05	k: 2	n:470000
KS ci ratio: 1.388229e-01	ci left: 1.576027e-03	ci right 1.813163e-03	k: 795	n:470000
CDKN2A   470000 perm   231 sec   (2031 perm/sec)   p_kst 1.691489e-03   p_cons 4.255319e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.685136e-06	k: 0	n:480000
Cons ci ratio: 2.263204e+00	ci left: 5.046031e-07	ci right 1.505135e-05	k: 2	n:480000
KS ci ratio: 1.371948e-01	ci left: 1.581410e-03	ci right 1.816337e-03	k: 814	n:480000
CDKN2A   480000 perm   238 sec   (2013 perm/sec)   p_kst 1.695833e-03   p_cons 4.166667e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.528297e-06	k: 0	n:490000
Cons ci ratio: 2.263204e+00	ci left: 4.943050e-07	ci right 1.474418e-05	k: 2	n:490000
KS ci ratio: 1.354602e-01	ci left: 1.590532e-03	ci right 1.823587e-03	k: 835	n:490000
CDKN2A   490000 perm   246 sec   (1995 perm/sec)   p_kst 1.704082e-03   p_cons 4.081633e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.377732e-06	k: 0	n:500000
Cons ci ratio: 2.263204e+00	ci left: 4.844189e-07	ci right 1.444930e-05	k: 2	n:500000
KS ci ratio: 1.344990e-01	ci left: 1.581910e-03	ci right 1.811925e-03	k: 847	n:500000
CDKN2A   500000 perm   253 sec   (1978 perm/sec)   p_kst 1.694000e-03   p_cons 4.000000e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.233071e-06	k: 0	n:510000
Cons ci ratio: 2.263204e+00	ci left: 4.749205e-07	ci right 1.416598e-05	k: 2	n:510000
KS ci ratio: 1.332480e-01	ci left: 1.581214e-03	ci right 1.808820e-03	k: 863	n:510000
CDKN2A   510000 perm   260 sec   (1961 perm/sec)   p_kst 1.692157e-03   p_cons 3.921569e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.093974e-06	k: 0	n:520000
Cons ci ratio: 1.959991e+00	ci left: 1.189756e-06	ci right 1.686005e-05	k: 3	n:520000
KS ci ratio: 1.320312e-01	ci left: 1.580555e-03	ci right 1.805825e-03	k: 879	n:520000
CDKN2A   520000 perm   267 sec   (1945 perm/sec)   p_kst 1.690385e-03   p_cons 5.769231e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.960126e-06	k: 0	n:530000
Cons ci ratio: 1.959991e+00	ci left: 1.167307e-06	ci right 1.654193e-05	k: 3	n:530000
KS ci ratio: 1.306283e-01	ci left: 1.585404e-03	ci right 1.808779e-03	k: 898	n:530000
CDKN2A   530000 perm   275 sec   (1928 perm/sec)   p_kst 1.694340e-03   p_cons 5.660377e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.831235e-06	k: 0	n:540000
Cons ci ratio: 1.959991e+00	ci left: 1.145691e-06	ci right 1.623560e-05	k: 3	n:540000
KS ci ratio: 1.293397e-01	ci left: 1.588295e-03	ci right 1.809699e-03	k: 916	n:540000
CDKN2A   540000 perm   282 sec   (1912 perm/sec)   p_kst 1.696296e-03   p_cons 5.555556e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.707031e-06	k: 0	n:550000
Cons ci ratio: 1.959991e+00	ci left: 1.124860e-06	ci right 1.594041e-05	k: 3	n:550000
KS ci ratio: 1.279516e-01	ci left: 1.594610e-03	ci right 1.814328e-03	k: 936	n:550000
CDKN2A   550000 perm   290 sec   (1896 perm/sec)   p_kst 1.701818e-03   p_cons 5.454545e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.587263e-06	k: 0	n:560000
Cons ci ratio: 1.959991e+00	ci left: 1.104773e-06	ci right 1.565576e-05	k: 3	n:560000
KS ci ratio: 1.264089e-01	ci left: 1.605900e-03	ci right 1.824306e-03	k: 959	n:560000
CDKN2A   560000 perm   298 sec   (1880 perm/sec)   p_kst 1.712500e-03   p_cons 5.357143e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.471697e-06	k: 0	n:570000
Cons ci ratio: 1.959991e+00	ci left: 1.085391e-06	ci right 1.538110e-05	k: 3	n:570000
KS ci ratio: 1.254329e-01	ci left: 1.603213e-03	ci right 1.819446e-03	k: 974	n:570000
CDKN2A   570000 perm   306 sec   (1865 perm/sec)   p_kst 1.708772e-03   p_cons 5.263158e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.360117e-06	k: 0	n:580000
Cons ci ratio: 1.959992e+00	ci left: 1.066677e-06	ci right 1.511591e-05	k: 3	n:580000
KS ci ratio: 1.237923e-01	ci left: 1.619003e-03	ci right 1.834299e-03	k: 1000	n:580000
CDKN2A   580000 perm   314 sec   (1850 perm/sec)   p_kst 1.724138e-03   p_cons 5.172414e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.252319e-06	k: 0	n:590000
Cons ci ratio: 1.959992e+00	ci left: 1.048598e-06	ci right 1.485971e-05	k: 3	n:590000
KS ci ratio: 1.227543e-01	ci left: 1.619487e-03	ci right 1.832911e-03	k: 1017	n:590000
CDKN2A   590000 perm   321 sec   (1835 perm/sec)   p_kst 1.723729e-03   p_cons 5.084746e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.148114e-06	k: 0	n:600000
Cons ci ratio: 1.959992e+00	ci left: 1.031121e-06	ci right 1.461205e-05	k: 3	n:600000
KS ci ratio: 1.218010e-01	ci left: 1.618347e-03	ci right 1.829844e-03	k: 1033	n:600000
CDKN2A   600000 perm   330 sec   (1821 perm/sec)   p_kst 1.721667e-03   p_cons 5.000000e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 6.047325e-06	k: 0	n:610000
Cons ci ratio: 1.959992e+00	ci left: 1.014218e-06	ci right 1.437251e-05	k: 3	n:610000
KS ci ratio: 1.209850e-01	ci left: 1.614070e-03	ci right 1.823495e-03	k: 1047	n:610000
CDKN2A   610000 perm   338 sec   (1807 perm/sec)   p_kst 1.716393e-03   p_cons 4.918033e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.949788e-06	k: 0	n:620000
Cons ci ratio: 1.959992e+00	ci left: 9.978594e-07	ci right 1.414070e-05	k: 3	n:620000
KS ci ratio: 1.200156e-01	ci left: 1.614630e-03	ci right 1.822329e-03	k: 1064	n:620000
CDKN2A   620000 perm   346 sec   (1792 perm/sec)   p_kst 1.716129e-03   p_cons 4.838710e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.855347e-06	k: 0	n:630000
Cons ci ratio: 1.959992e+00	ci left: 9.820203e-07	ci right 1.391624e-05	k: 3	n:630000
KS ci ratio: 1.189040e-01	ci left: 1.619798e-03	ci right 1.826097e-03	k: 1084	n:630000
CDKN2A   630000 perm   354 sec   (1778 perm/sec)   p_kst 1.720635e-03   p_cons 4.761905e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.763858e-06	k: 0	n:640000
Cons ci ratio: 1.959992e+00	ci left: 9.666762e-07	ci right 1.369880e-05	k: 3	n:640000
KS ci ratio: 1.176629e-01	ci left: 1.629364e-03	ci right 1.834564e-03	k: 1107	n:640000
CDKN2A   640000 perm   363 sec   (1764 perm/sec)   p_kst 1.729688e-03   p_cons 4.687500e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.675183e-06	k: 0	n:650000
Cons ci ratio: 1.959992e+00	ci left: 9.518043e-07	ci right 1.348805e-05	k: 3	n:650000
KS ci ratio: 1.168226e-01	ci left: 1.628190e-03	ci right 1.831677e-03	k: 1123	n:650000
CDKN2A   650000 perm   371 sec   (1751 perm/sec)   p_kst 1.727692e-03   p_cons 4.615385e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.589196e-06	k: 0	n:660000
Cons ci ratio: 1.959993e+00	ci left: 9.373830e-07	ci right 1.328369e-05	k: 3	n:660000
KS ci ratio: 1.160510e-01	ci left: 1.625586e-03	ci right 1.827313e-03	k: 1138	n:660000
CDKN2A   660000 perm   380 sec   (1737 perm/sec)   p_kst 1.724242e-03   p_cons 4.545455e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.505775e-06	k: 0	n:670000
Cons ci ratio: 1.959993e+00	ci left: 9.233922e-07	ci right 1.308543e-05	k: 3	n:670000
KS ci ratio: 1.151446e-01	ci left: 1.627412e-03	ci right 1.827682e-03	k: 1156	n:670000
CDKN2A   670000 perm   389 sec   (1724 perm/sec)   p_kst 1.725373e-03   p_cons 4.477612e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.424808e-06	k: 0	n:680000
Cons ci ratio: 1.959993e+00	ci left: 9.098129e-07	ci right 1.289299e-05	k: 3	n:680000
KS ci ratio: 1.140165e-01	ci left: 1.636334e-03	ci right 1.835596e-03	k: 1179	n:680000
CDKN2A   680000 perm   397 sec   (1711 perm/sec)   p_kst 1.733824e-03   p_cons 4.411765e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.346188e-06	k: 0	n:690000
Cons ci ratio: 1.959993e+00	ci left: 8.966272e-07	ci right 1.270614e-05	k: 3	n:690000
KS ci ratio: 1.129208e-01	ci left: 1.645007e-03	ci right 1.843272e-03	k: 1202	n:690000
CDKN2A   690000 perm   406 sec   (1698 perm/sec)   p_kst 1.742029e-03   p_cons 4.347826e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.269814e-06	k: 0	n:700000
Cons ci ratio: 1.959993e+00	ci left: 8.838182e-07	ci right 1.252462e-05	k: 3	n:700000
KS ci ratio: 1.117649e-01	ci left: 1.656218e-03	ci right 1.853656e-03	k: 1227	n:700000
CDKN2A   700000 perm   415 sec   (1686 perm/sec)   p_kst 1.752857e-03   p_cons 4.285714e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.195591e-06	k: 0	n:710000
Cons ci ratio: 1.959993e+00	ci left: 8.713700e-07	ci right 1.234822e-05	k: 3	n:710000
KS ci ratio: 1.107323e-01	ci left: 1.664384e-03	ci right 1.860843e-03	k: 1250	n:710000
CDKN2A   710000 perm   424 sec   (1673 perm/sec)   p_kst 1.760563e-03   p_cons 4.225352e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 5.123431e-06	k: 0	n:720000
Cons ci ratio: 1.959993e+00	ci left: 8.592677e-07	ci right 1.217672e-05	k: 3	n:720000
KS ci ratio: 1.099441e-01	ci left: 1.665578e-03	ci right 1.860688e-03	k: 1268	n:720000
CDKN2A   720000 perm   434 sec   (1661 perm/sec)   p_kst 1.761111e-03   p_cons 4.166667e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 5.053247e-06	k: 0	n:730000
Cons ci ratio: 1.959993e+00	ci left: 8.474969e-07	ci right 1.200992e-05	k: 3	n:730000
KS ci ratio: 1.093856e-01	ci left: 1.660081e-03	ci right 1.853496e-03	k: 1281	n:730000
CDKN2A   730000 perm   443 sec   (1649 perm/sec)   p_kst 1.754795e-03   p_cons 4.109589e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.984960e-06	k: 0	n:740000
Cons ci ratio: 1.959993e+00	ci left: 8.360442e-07	ci right 1.184762e-05	k: 3	n:740000
KS ci ratio: 1.086256e-01	ci left: 1.661309e-03	ci right 1.853436e-03	k: 1299	n:740000
CDKN2A   740000 perm   452 sec   (1636 perm/sec)   p_kst 1.755405e-03   p_cons 4.054054e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.918494e-06	k: 0	n:750000
Cons ci ratio: 1.959993e+00	ci left: 8.248969e-07	ci right 1.168965e-05	k: 3	n:750000
KS ci ratio: 1.076769e-01	ci left: 1.668996e-03	ci right 1.860219e-03	k: 1322	n:750000
CDKN2A   750000 perm   462 sec   (1624 perm/sec)   p_kst 1.762667e-03   p_cons 4.000000e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.853777e-06	k: 0	n:760000
Cons ci ratio: 1.959994e+00	ci left: 8.140430e-07	ci right 1.153584e-05	k: 3	n:760000
KS ci ratio: 1.069518e-01	ci left: 1.670084e-03	ci right 1.860062e-03	k: 1340	n:760000
CDKN2A   760000 perm   471 sec   (1612 perm/sec)   p_kst 1.763158e-03   p_cons 3.947368e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.790741e-06	k: 0	n:770000
Cons ci ratio: 1.959994e+00	ci left: 8.034710e-07	ci right 1.138603e-05	k: 3	n:770000
KS ci ratio: 1.062411e-01	ci left: 1.671148e-03	ci right 1.859905e-03	k: 1358	n:770000
CDKN2A   770000 perm   481 sec   (1601 perm/sec)   p_kst 1.763636e-03   p_cons 3.896104e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.729321e-06	k: 0	n:780000
Cons ci ratio: 1.959994e+00	ci left: 7.931701e-07	ci right 1.124005e-05	k: 3	n:780000
KS ci ratio: 1.055444e-01	ci left: 1.672189e-03	ci right 1.859748e-03	k: 1376	n:780000
CDKN2A   780000 perm   491 sec   (1590 perm/sec)   p_kst 1.764103e-03   p_cons 3.846154e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.669457e-06	k: 0	n:790000
Cons ci ratio: 1.959994e+00	ci left: 7.831300e-07	ci right 1.109777e-05	k: 3	n:790000
KS ci ratio: 1.050500e-01	ci left: 1.667044e-03	ci right 1.853096e-03	k: 1389	n:790000
CDKN2A   790000 perm   500 sec   (1578 perm/sec)   p_kst 1.758228e-03   p_cons 3.797468e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.611089e-06	k: 0	n:800000
Cons ci ratio: 1.753071e+00	ci left: 1.362333e-06	ci right 1.280194e-05	k: 4	n:800000
KS ci ratio: 1.044879e-01	ci left: 1.664464e-03	ci right 1.849173e-03	k: 1404	n:800000
CDKN2A   800000 perm   510 sec   (1568 perm/sec)   p_kst 1.755000e-03   p_cons 5.000000e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.554162e-06	k: 0	n:810000
Cons ci ratio: 1.600326e+00	ci left: 2.004307e-06	ci right 1.440529e-05	k: 5	n:810000
KS ci ratio: 1.038249e-01	ci left: 1.665559e-03	ci right 1.849145e-03	k: 1422	n:810000
CDKN2A   810000 perm   520 sec   (1557 perm/sec)   p_kst 1.755556e-03   p_cons 6.172840e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.498623e-06	k: 0	n:820000
Cons ci ratio: 1.600326e+00	ci left: 1.979864e-06	ci right 1.422962e-05	k: 5	n:820000
KS ci ratio: 1.034263e-01	ci left: 1.658314e-03	ci right 1.840357e-03	k: 1433	n:820000
CDKN2A   820000 perm   530 sec   (1546 perm/sec)   p_kst 1.747561e-03   p_cons 6.097561e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.444423e-06	k: 0	n:830000
Cons ci ratio: 1.600327e+00	ci left: 1.956010e-06	ci right 1.405817e-05	k: 5	n:830000
KS ci ratio: 1.025359e-01	ci left: 1.667679e-03	ci right 1.849080e-03	k: 1458	n:830000
CDKN2A   830000 perm   541 sec   (1535 perm/sec)   p_kst 1.756627e-03   p_cons 6.024096e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.391514e-06	k: 0	n:840000
Cons ci ratio: 1.600327e+00	ci left: 1.932725e-06	ci right 1.389082e-05	k: 5	n:840000
KS ci ratio: 1.020130e-01	ci left: 1.665226e-03	ci right 1.845381e-03	k: 1473	n:840000
CDKN2A   840000 perm   551 sec   (1525 perm/sec)   p_kst 1.753571e-03   p_cons 5.952381e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.339849e-06	k: 0	n:850000
Cons ci ratio: 1.600327e+00	ci left: 1.909987e-06	ci right 1.372740e-05	k: 5	n:850000
KS ci ratio: 1.012260e-01	ci left: 1.672006e-03	ci right 1.851416e-03	k: 1496	n:850000
CDKN2A   850000 perm   561 sec   (1515 perm/sec)   p_kst 1.760000e-03   p_cons 5.882353e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.289386e-06	k: 0	n:860000
Cons ci ratio: 1.600327e+00	ci left: 1.887777e-06	ci right 1.356778e-05	k: 5	n:860000
KS ci ratio: 1.008231e-01	ci left: 1.666165e-03	ci right 1.844194e-03	k: 1508	n:860000
CDKN2A   860000 perm   572 sec   (1505 perm/sec)   p_kst 1.753488e-03   p_cons 5.813953e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.240082e-06	k: 0	n:870000
Cons ci ratio: 1.600327e+00	ci left: 1.866079e-06	ci right 1.341182e-05	k: 5	n:870000
KS ci ratio: 1.004249e-01	ci left: 1.660460e-03	ci right 1.837137e-03	k: 1520	n:870000
CDKN2A   870000 perm   582 sec   (1495 perm/sec)   p_kst 1.747126e-03   p_cons 5.747126e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.191900e-06	k: 0	n:880000
Cons ci ratio: 1.600327e+00	ci left: 1.844873e-06	ci right 1.325942e-05	k: 5	n:880000
KS ci ratio: 1.000314e-01	ci left: 1.654885e-03	ci right 1.830239e-03	k: 1532	n:880000
CDKN2A   880000 perm   593 sec   (1485 perm/sec)   p_kst 1.740909e-03   p_cons 5.681818e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.144800e-06	k: 0	n:890000
Cons ci ratio: 1.600327e+00	ci left: 1.824144e-06	ci right 1.311044e-05	k: 5	n:890000
KS ci ratio: 9.967475e-02	ci left: 1.648342e-03	ci right 1.822343e-03	k: 1543	n:890000
CDKN2A   890000 perm   603 sec   (1475 perm/sec)   p_kst 1.733708e-03   p_cons 5.617978e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.098747e-06	k: 0	n:900000
Cons ci ratio: 1.600327e+00	ci left: 1.803876e-06	ci right 1.296477e-05	k: 5	n:900000
KS ci ratio: 9.894023e-02	ci left: 1.654948e-03	ci right 1.828284e-03	k: 1566	n:900000
CDKN2A   900000 perm   614 sec   (1465 perm/sec)   p_kst 1.740000e-03   p_cons 5.555556e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.053705e-06	k: 0	n:910000
Cons ci ratio: 1.600327e+00	ci left: 1.784053e-06	ci right 1.282230e-05	k: 5	n:910000
KS ci ratio: 9.831467e-02	ci left: 1.658198e-03	ci right 1.830713e-03	k: 1586	n:910000
CDKN2A   910000 perm   625 sec   (1456 perm/sec)   p_kst 1.742857e-03   p_cons 5.494505e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.009644e-06	k: 0	n:920000
Cons ci ratio: 1.600327e+00	ci left: 1.764661e-06	ci right 1.268292e-05	k: 5	n:920000
KS ci ratio: 9.782287e-02	ci left: 1.657138e-03	ci right 1.828632e-03	k: 1602	n:920000
CDKN2A   920000 perm   636 sec   (1446 perm/sec)   p_kst 1.741304e-03   p_cons 5.434783e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.966529e-06	k: 0	n:930000
Cons ci ratio: 1.600327e+00	ci left: 1.745687e-06	ci right 1.254655e-05	k: 5	n:930000
KS ci ratio: 9.733837e-02	ci left: 1.656104e-03	ci right 1.826593e-03	k: 1618	n:930000
CDKN2A   930000 perm   647 sec   (1437 perm/sec)   p_kst 1.739785e-03   p_cons 5.376344e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.924332e-06	k: 0	n:940000
Cons ci ratio: 1.600327e+00	ci left: 1.727115e-06	ci right 1.241308e-05	k: 5	n:940000
KS ci ratio: 9.686100e-02	ci left: 1.655094e-03	ci right 1.824596e-03	k: 1634	n:940000
CDKN2A   940000 perm   658 sec   (1428 perm/sec)   p_kst 1.738298e-03   p_cons 5.319149e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.883023e-06	k: 0	n:950000
Cons ci ratio: 1.600327e+00	ci left: 1.708935e-06	ci right 1.228241e-05	k: 5	n:950000
KS ci ratio: 9.618653e-02	ci left: 1.661298e-03	ci right 1.830184e-03	k: 1657	n:950000
CDKN2A   950000 perm   670 sec   (1419 perm/sec)   p_kst 1.744211e-03   p_cons 5.263158e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.842575e-06	k: 0	n:960000
Cons ci ratio: 1.600327e+00	ci left: 1.691134e-06	ci right 1.215447e-05	k: 5	n:960000
KS ci ratio: 9.544069e-02	ci left: 1.670428e-03	ci right 1.838851e-03	k: 1683	n:960000
CDKN2A   960000 perm   681 sec   (1410 perm/sec)   p_kst 1.753125e-03   p_cons 5.208333e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.802961e-06	k: 0	n:970000
Cons ci ratio: 1.600328e+00	ci left: 1.673699e-06	ci right 1.202917e-05	k: 5	n:970000
KS ci ratio: 9.487881e-02	ci left: 1.673335e-03	ci right 1.841003e-03	k: 1703	n:970000
CDKN2A   970000 perm   692 sec   (1401 perm/sec)   p_kst 1.755670e-03   p_cons 5.154639e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.764156e-06	k: 0	n:980000
Cons ci ratio: 1.600328e+00	ci left: 1.656621e-06	ci right 1.190642e-05	k: 5	n:980000
KS ci ratio: 9.427199e-02	ci left: 1.678178e-03	ci right 1.845197e-03	k: 1725	n:980000
CDKN2A   980000 perm   704 sec   (1392 perm/sec)   p_kst 1.760204e-03   p_cons 5.102041e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.726134e-06	k: 0	n:990000
Cons ci ratio: 1.600328e+00	ci left: 1.639887e-06	ci right 1.178615e-05	k: 5	n:990000
KS ci ratio: 9.389214e-02	ci left: 1.675035e-03	ci right 1.841033e-03	k: 1739	n:990000
CDKN2A   990000 perm   716 sec   (1384 perm/sec)   p_kst 1.756566e-03   p_cons 5.050505e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.688873e-06	k: 0	n:1000000
Cons ci ratio: 1.600328e+00	ci left: 1.623488e-06	ci right 1.166829e-05	k: 5	n:1000000
KS ci ratio: 9.319802e-02	ci left: 1.683677e-03	ci right 1.849230e-03	k: 1765	n:1000000
CDKN2A   1000000 perm   727 sec   (1375 perm/sec)   p_kst 1.765000e-03   p_cons 5.000000e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.652349e-06	k: 0	n:1010000
Cons ci ratio: 1.600328e+00	ci left: 1.607414e-06	ci right 1.155277e-05	k: 5	n:1010000
KS ci ratio: 9.257083e-02	ci left: 1.690218e-03	ci right 1.855235e-03	k: 1789	n:1010000
CDKN2A   1010000 perm   739 sec   (1367 perm/sec)   p_kst 1.771287e-03   p_cons 4.950495e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.616542e-06	k: 0	n:1020000
Cons ci ratio: 1.600328e+00	ci left: 1.591655e-06	ci right 1.143950e-05	k: 5	n:1020000
KS ci ratio: 9.213439e-02	ci left: 1.689929e-03	ci right 1.854098e-03	k: 1806	n:1020000
CDKN2A   1020000 perm   751 sec   (1359 perm/sec)   p_kst 1.770588e-03   p_cons 4.901961e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.581430e-06	k: 0	n:1030000
Cons ci ratio: 1.600328e+00	ci left: 1.576202e-06	ci right 1.132844e-05	k: 5	n:1030000
KS ci ratio: 9.180496e-02	ci left: 1.685852e-03	ci right 1.849009e-03	k: 1819	n:1030000
CDKN2A   1030000 perm   763 sec   (1350 perm/sec)   p_kst 1.766019e-03   p_cons 4.854369e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.546993e-06	k: 0	n:1040000
Cons ci ratio: 1.600328e+00	ci left: 1.561046e-06	ci right 1.121951e-05	k: 5	n:1040000
KS ci ratio: 9.145405e-02	ci left: 1.682795e-03	ci right 1.845000e-03	k: 1833	n:1040000
CDKN2A   1040000 perm   775 sec   (1342 perm/sec)   p_kst 1.762500e-03   p_cons 4.807692e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.513212e-06	k: 0	n:1050000
Cons ci ratio: 1.600328e+00	ci left: 1.546179e-06	ci right 1.111266e-05	k: 5	n:1050000
KS ci ratio: 9.120606e-02	ci left: 1.676075e-03	ci right 1.837170e-03	k: 1843	n:1050000
CDKN2A   1050000 perm   787 sec   (1334 perm/sec)   p_kst 1.755238e-03   p_cons 4.761905e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.480069e-06	k: 0	n:1060000
Cons ci ratio: 1.600328e+00	ci left: 1.531593e-06	ci right 1.100783e-05	k: 5	n:1060000
KS ci ratio: 9.059370e-02	ci left: 1.683312e-03	ci right 1.843959e-03	k: 1868	n:1060000
CDKN2A   1060000 perm   800 sec   (1326 perm/sec)   p_kst 1.762264e-03   p_cons 4.716981e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.447545e-06	k: 0	n:1070000
Cons ci ratio: 1.600328e+00	ci left: 1.517279e-06	ci right 1.090495e-05	k: 5	n:1070000
KS ci ratio: 9.025645e-02	ci left: 1.680368e-03	ci right 1.840105e-03	k: 1882	n:1070000
CDKN2A   1070000 perm   812 sec   (1318 perm/sec)   p_kst 1.758879e-03   p_cons 4.672897e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.415623e-06	k: 0	n:1080000
Cons ci ratio: 1.600328e+00	ci left: 1.503230e-06	ci right 1.080398e-05	k: 5	n:1080000
KS ci ratio: 8.978081e-02	ci left: 1.682911e-03	ci right 1.842003e-03	k: 1902	n:1080000
CDKN2A   1080000 perm   824 sec   (1310 perm/sec)   p_kst 1.761111e-03   p_cons 4.629630e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.384287e-06	k: 0	n:1090000
Cons ci ratio: 1.600328e+00	ci left: 1.489439e-06	ci right 1.070486e-05	k: 5	n:1090000
KS ci ratio: 8.940581e-02	ci left: 1.681821e-03	ci right 1.840111e-03	k: 1918	n:1090000
CDKN2A   1090000 perm   837 sec   (1303 perm/sec)   p_kst 1.759633e-03   p_cons 4.587156e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.353521e-06	k: 0	n:1100000
Cons ci ratio: 1.600328e+00	ci left: 1.475898e-06	ci right 1.060754e-05	k: 5	n:1100000
KS ci ratio: 8.896641e-02	ci left: 1.683419e-03	ci right 1.841041e-03	k: 1937	n:1100000
CDKN2A   1100000 perm   849 sec   (1295 perm/sec)   p_kst 1.760909e-03   p_cons 4.545455e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.323309e-06	k: 0	n:1110000
Cons ci ratio: 1.600328e+00	ci left: 1.462602e-06	ci right 1.051198e-05	k: 5	n:1110000
KS ci ratio: 8.851078e-02	ci left: 1.685872e-03	ci right 1.842873e-03	k: 1957	n:1110000
CDKN2A   1110000 perm   862 sec   (1288 perm/sec)   p_kst 1.763063e-03   p_cons 4.504505e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.293637e-06	k: 0	n:1120000
Cons ci ratio: 1.600328e+00	ci left: 1.449543e-06	ci right 1.041812e-05	k: 5	n:1120000
KS ci ratio: 8.808438e-02	ci left: 1.687409e-03	ci right 1.843757e-03	k: 1976	n:1120000
CDKN2A   1120000 perm   875 sec   (1280 perm/sec)   p_kst 1.764286e-03   p_cons 4.464286e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.264490e-06	k: 0	n:1130000
Cons ci ratio: 1.600328e+00	ci left: 1.436715e-06	ci right 1.032593e-05	k: 5	n:1130000
KS ci ratio: 8.775221e-02	ci left: 1.685459e-03	ci right 1.841007e-03	k: 1991	n:1130000
CDKN2A   1130000 perm   888 sec   (1273 perm/sec)   p_kst 1.761947e-03   p_cons 4.424779e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.235854e-06	k: 0	n:1140000
Cons ci ratio: 1.600328e+00	ci left: 1.424112e-06	ci right 1.023535e-05	k: 5	n:1140000
KS ci ratio: 8.742378e-02	ci left: 1.683544e-03	ci right 1.838304e-03	k: 2006	n:1140000
CDKN2A   1140000 perm   901 sec   (1266 perm/sec)   p_kst 1.759649e-03   p_cons 4.385965e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.207716e-06	k: 0	n:1150000
Cons ci ratio: 1.600328e+00	ci left: 1.411729e-06	ci right 1.014635e-05	k: 5	n:1150000
KS ci ratio: 8.701282e-02	ci left: 1.685065e-03	ci right 1.839200e-03	k: 2025	n:1150000
CDKN2A   1150000 perm   914 sec   (1259 perm/sec)   p_kst 1.760870e-03   p_cons 4.347826e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.180063e-06	k: 0	n:1160000
Cons ci ratio: 1.600328e+00	ci left: 1.399559e-06	ci right 1.005888e-05	k: 5	n:1160000
KS ci ratio: 8.662883e-02	ci left: 1.685719e-03	ci right 1.839199e-03	k: 2043	n:1160000
CDKN2A   1160000 perm   927 sec   (1252 perm/sec)   p_kst 1.761207e-03   p_cons 4.310345e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.152883e-06	k: 0	n:1170000
Cons ci ratio: 1.600329e+00	ci left: 1.387597e-06	ci right 9.972905e-06	k: 5	n:1170000
KS ci ratio: 8.631280e-02	ci left: 1.683855e-03	ci right 1.836577e-03	k: 2058	n:1170000
CDKN2A   1170000 perm   940 sec   (1245 perm/sec)   p_kst 1.758974e-03   p_cons 4.273504e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.126164e-06	k: 0	n:1180000
Cons ci ratio: 1.600329e+00	ci left: 1.375837e-06	ci right 9.888389e-06	k: 5	n:1180000
KS ci ratio: 8.581389e-02	ci left: 1.689486e-03	ci right 1.841790e-03	k: 2082	n:1180000
CDKN2A   1180000 perm   953 sec   (1238 perm/sec)   p_kst 1.764407e-03   p_cons 4.237288e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.099894e-06	k: 0	n:1190000
Cons ci ratio: 1.600329e+00	ci left: 1.364276e-06	ci right 9.805294e-06	k: 5	n:1190000
KS ci ratio: 8.546587e-02	ci left: 1.689269e-03	ci right 1.840904e-03	k: 2099	n:1190000
CDKN2A   1190000 perm   966 sec   (1231 perm/sec)   p_kst 1.763866e-03   p_cons 4.201681e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.074061e-06	k: 0	n:1200000
Cons ci ratio: 1.600329e+00	ci left: 1.352907e-06	ci right 9.723583e-06	k: 5	n:1200000
KS ci ratio: 8.498141e-02	ci left: 1.694765e-03	ci right 1.845989e-03	k: 2123	n:1200000
CDKN2A   1200000 perm   980 sec   (1225 perm/sec)   p_kst 1.769167e-03   p_cons 4.166667e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.048656e-06	k: 0	n:1210000
Cons ci ratio: 1.600329e+00	ci left: 1.341726e-06	ci right 9.643223e-06	k: 5	n:1210000
KS ci ratio: 8.462358e-02	ci left: 1.695320e-03	ci right 1.845924e-03	k: 2141	n:1210000
CDKN2A   1210000 perm   993 sec   (1218 perm/sec)   p_kst 1.769421e-03   p_cons 4.132231e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.023667e-06	k: 0	n:1220000
Cons ci ratio: 1.600329e+00	ci left: 1.330728e-06	ci right 9.564180e-06	k: 5	n:1220000
KS ci ratio: 8.423118e-02	ci left: 1.697471e-03	ci right 1.847533e-03	k: 2161	n:1220000
CDKN2A   1220000 perm   1007 sec   (1212 perm/sec)   p_kst 1.771311e-03   p_cons 4.098361e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.999084e-06	k: 0	n:1230000
Cons ci ratio: 1.600329e+00	ci left: 1.319909e-06	ci right 9.486423e-06	k: 5	n:1230000
KS ci ratio: 8.384419e-02	ci left: 1.699589e-03	ci right 1.849114e-03	k: 2181	n:1230000
CDKN2A   1230000 perm   1021 sec   (1205 perm/sec)   p_kst 1.773171e-03   p_cons 4.065041e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.974898e-06	k: 0	n:1240000
Cons ci ratio: 1.600329e+00	ci left: 1.309264e-06	ci right 9.409920e-06	k: 5	n:1240000
KS ci ratio: 8.350048e-02	ci left: 1.700095e-03	ci right 1.849022e-03	k: 2199	n:1240000
CDKN2A   1240000 perm   1034 sec   (1199 perm/sec)   p_kst 1.773387e-03   p_cons 4.032258e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.951099e-06	k: 0	n:1250000
Cons ci ratio: 1.600329e+00	ci left: 1.298790e-06	ci right 9.334641e-06	k: 5	n:1250000
KS ci ratio: 8.327387e-02	ci left: 1.695894e-03	ci right 1.844030e-03	k: 2211	n:1250000
CDKN2A   1250000 perm   1048 sec   (1193 perm/sec)   p_kst 1.768800e-03   p_cons 4.000000e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.927678e-06	k: 0	n:1260000
Cons ci ratio: 1.600329e+00	ci left: 1.288482e-06	ci right 9.260557e-06	k: 5	n:1260000
KS ci ratio: 8.303039e-02	ci left: 1.692537e-03	ci right 1.839927e-03	k: 2224	n:1260000
CDKN2A   1260000 perm   1062 sec   (1186 perm/sec)   p_kst 1.765079e-03   p_cons 3.968254e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.904625e-06	k: 0	n:1270000
Cons ci ratio: 1.600329e+00	ci left: 1.278337e-06	ci right 9.187639e-06	k: 5	n:1270000
KS ci ratio: 8.277052e-02	ci left: 1.690005e-03	ci right 1.836692e-03	k: 2238	n:1270000
CDKN2A   1270000 perm   1076 sec   (1180 perm/sec)   p_kst 1.762205e-03   p_cons 3.937008e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.881933e-06	k: 0	n:1280000
Cons ci ratio: 1.600329e+00	ci left: 1.268350e-06	ci right 9.115861e-06	k: 5	n:1280000
KS ci ratio: 8.254978e-02	ci left: 1.685983e-03	ci right 1.831911e-03	k: 2250	n:1280000
CDKN2A   1280000 perm   1090 sec   (1174 perm/sec)   p_kst 1.757813e-03   p_cons 3.906250e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.859592e-06	k: 0	n:1290000
Cons ci ratio: 1.600329e+00	ci left: 1.258518e-06	ci right 9.045195e-06	k: 5	n:1290000
KS ci ratio: 8.222168e-02	ci left: 1.686579e-03	ci right 1.831951e-03	k: 2268	n:1290000
CDKN2A   1290000 perm   1104 sec   (1168 perm/sec)   p_kst 1.758140e-03   p_cons 3.875969e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.837596e-06	k: 0	n:1300000
Cons ci ratio: 1.600329e+00	ci left: 1.248837e-06	ci right 8.975617e-06	k: 5	n:1300000
KS ci ratio: 8.193336e-02	ci left: 1.685661e-03	ci right 1.830420e-03	k: 2284	n:1300000
CDKN2A   1300000 perm   1119 sec   (1162 perm/sec)   p_kst 1.756923e-03   p_cons 3.846154e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.815935e-06	k: 0	n:1310000
Cons ci ratio: 1.600329e+00	ci left: 1.239304e-06	ci right 8.907101e-06	k: 5	n:1310000
KS ci ratio: 8.163029e-02	ci left: 1.685505e-03	ci right 1.829689e-03	k: 2301	n:1310000
CDKN2A   1310000 perm   1133 sec   (1156 perm/sec)   p_kst 1.756489e-03   p_cons 3.816794e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.794602e-06	k: 0	n:1320000
Cons ci ratio: 1.600329e+00	ci left: 1.229915e-06	ci right 8.839623e-06	k: 5	n:1320000
KS ci ratio: 8.138330e-02	ci left: 1.683126e-03	ci right 1.826650e-03	k: 2315	n:1320000
CDKN2A   1320000 perm   1147 sec   (1151 perm/sec)   p_kst 1.753788e-03   p_cons 3.787879e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.773590e-06	k: 0	n:1330000
Cons ci ratio: 1.600329e+00	ci left: 1.220668e-06	ci right 8.773160e-06	k: 5	n:1330000
KS ci ratio: 8.105147e-02	ci left: 1.684466e-03	ci right 1.827492e-03	k: 2334	n:1330000
CDKN2A   1330000 perm   1162 sec   (1145 perm/sec)   p_kst 1.754887e-03   p_cons 3.759398e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.752891e-06	k: 0	n:1340000
Cons ci ratio: 1.600329e+00	ci left: 1.211558e-06	ci right 8.707689e-06	k: 5	n:1340000
KS ci ratio: 8.068933e-02	ci left: 1.687250e-03	ci right 1.829842e-03	k: 2355	n:1340000
CDKN2A   1340000 perm   1176 sec   (1139 perm/sec)   p_kst 1.757463e-03   p_cons 3.731343e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.732500e-06	k: 0	n:1350000
Cons ci ratio: 1.600329e+00	ci left: 1.202584e-06	ci right 8.643188e-06	k: 5	n:1350000
KS ci ratio: 8.036589e-02	ci left: 1.688543e-03	ci right 1.830645e-03	k: 2374	n:1350000
CDKN2A   1350000 perm   1191 sec   (1133 perm/sec)   p_kst 1.758519e-03   p_cons 3.703704e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.712408e-06	k: 0	n:1360000
Cons ci ratio: 1.600329e+00	ci left: 1.193741e-06	ci right 8.579635e-06	k: 5	n:1360000
KS ci ratio: 8.016379e-02	ci left: 1.684773e-03	ci right 1.826185e-03	k: 2386	n:1360000
CDKN2A   1360000 perm   1206 sec   (1128 perm/sec)   p_kst 1.754412e-03   p_cons 3.676471e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.692609e-06	k: 0	n:1370000
Cons ci ratio: 1.600329e+00	ci left: 1.185028e-06	ci right 8.517010e-06	k: 5	n:1370000
KS ci ratio: 7.978019e-02	ci left: 1.688929e-03	ci right 1.829979e-03	k: 2409	n:1370000
CDKN2A   1370000 perm   1221 sec   (1122 perm/sec)   p_kst 1.758394e-03   p_cons 3.649635e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.673097e-06	k: 0	n:1380000
Cons ci ratio: 1.600329e+00	ci left: 1.176440e-06	ci right 8.455293e-06	k: 5	n:1380000
KS ci ratio: 7.933674e-02	ci left: 1.695866e-03	ci right 1.836673e-03	k: 2436	n:1380000
CDKN2A   1380000 perm   1236 sec   (1116 perm/sec)   p_kst 1.765217e-03   p_cons 3.623188e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.653867e-06	k: 0	n:1390000
Cons ci ratio: 1.600329e+00	ci left: 1.167977e-06	ci right 8.394463e-06	k: 5	n:1390000
KS ci ratio: 7.909377e-02	ci left: 1.694243e-03	ci right 1.834465e-03	k: 2451	n:1390000
CDKN2A   1390000 perm   1251 sec   (1111 perm/sec)   p_kst 1.763309e-03   p_cons 3.597122e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.634910e-06	k: 0	n:1400000
Cons ci ratio: 1.600329e+00	ci left: 1.159634e-06	ci right 8.334503e-06	k: 5	n:1400000
KS ci ratio: 7.888506e-02	ci left: 1.691244e-03	ci right 1.830830e-03	k: 2464	n:1400000
CDKN2A   1400000 perm   1266 sec   (1105 perm/sec)   p_kst 1.760000e-03   p_cons 3.571429e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.616223e-06	k: 0	n:1410000
Cons ci ratio: 1.600329e+00	ci left: 1.151410e-06	ci right 8.275393e-06	k: 5	n:1410000
KS ci ratio: 7.853526e-02	ci left: 1.694545e-03	ci right 1.833756e-03	k: 2486	n:1410000
CDKN2A   1410000 perm   1282 sec   (1100 perm/sec)   p_kst 1.763121e-03   p_cons 3.546099e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.597799e-06	k: 0	n:1420000
Cons ci ratio: 1.600329e+00	ci left: 1.143301e-06	ci right 8.217116e-06	k: 5	n:1420000
KS ci ratio: 7.814328e-02	ci left: 1.699872e-03	ci right 1.838792e-03	k: 2511	n:1420000
CDKN2A   1420000 perm   1297 sec   (1095 perm/sec)   p_kst 1.768310e-03   p_cons 3.521127e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.579633e-06	k: 0	n:1430000
Cons ci ratio: 1.600329e+00	ci left: 1.135306e-06	ci right 8.159654e-06	k: 5	n:1430000
KS ci ratio: 7.777246e-02	ci left: 1.704441e-03	ci right 1.843043e-03	k: 2535	n:1430000
CDKN2A   1430000 perm   1313 sec   (1089 perm/sec)   p_kst 1.772727e-03   p_cons 3.496503e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.561719e-06	k: 0	n:1440000
Cons ci ratio: 1.600329e+00	ci left: 1.127422e-06	ci right 8.102990e-06	k: 5	n:1440000
KS ci ratio: 7.749791e-02	ci left: 1.704862e-03	ci right 1.842987e-03	k: 2553	n:1440000
CDKN2A   1440000 perm   1328 sec   (1084 perm/sec)   p_kst 1.772917e-03   p_cons 3.472222e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.544052e-06	k: 0	n:1450000
Cons ci ratio: 1.600329e+00	ci left: 1.119647e-06	ci right 8.047107e-06	k: 5	n:1450000
KS ci ratio: 7.725634e-02	ci left: 1.703926e-03	ci right 1.841525e-03	k: 2569	n:1450000
CDKN2A   1450000 perm   1344 sec   (1079 perm/sec)   p_kst 1.771724e-03   p_cons 3.448276e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.526627e-06	k: 0	n:1460000
Cons ci ratio: 1.600329e+00	ci left: 1.111978e-06	ci right 7.991990e-06	k: 5	n:1460000
KS ci ratio: 7.695742e-02	ci left: 1.705689e-03	ci right 1.842874e-03	k: 2589	n:1460000
CDKN2A   1460000 perm   1360 sec   (1074 perm/sec)   p_kst 1.773288e-03   p_cons 3.424658e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.509439e-06	k: 0	n:1470000
Cons ci ratio: 1.600329e+00	ci left: 1.104413e-06	ci right 7.937623e-06	k: 5	n:1470000
KS ci ratio: 7.675036e-02	ci left: 1.703427e-03	ci right 1.840045e-03	k: 2603	n:1470000
CDKN2A   1470000 perm   1376 sec   (1069 perm/sec)   p_kst 1.770748e-03   p_cons 3.401361e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.492483e-06	k: 0	n:1480000
Cons ci ratio: 1.600330e+00	ci left: 1.096951e-06	ci right 7.883990e-06	k: 5	n:1480000
KS ci ratio: 7.650107e-02	ci left: 1.703184e-03	ci right 1.839319e-03	k: 2620	n:1480000
CDKN2A   1480000 perm   1392 sec   (1063 perm/sec)   p_kst 1.770270e-03   p_cons 3.378378e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.475755e-06	k: 0	n:1490000
Cons ci ratio: 1.600330e+00	ci left: 1.089589e-06	ci right 7.831078e-06	k: 5	n:1490000
KS ci ratio: 7.631217e-02	ci left: 1.700311e-03	ci right 1.835866e-03	k: 2633	n:1490000
CDKN2A   1490000 perm   1408 sec   (1058 perm/sec)   p_kst 1.767114e-03   p_cons 3.355705e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.459250e-06	k: 0	n:1500000
Cons ci ratio: 1.600330e+00	ci left: 1.082325e-06	ci right 7.778871e-06	k: 5	n:1500000
KS ci ratio: 7.600969e-02	ci left: 1.702709e-03	ci right 1.837893e-03	k: 2654	n:1500000
CDKN2A   1500000 perm   1424 sec   (1053 perm/sec)   p_kst 1.769333e-03   p_cons 3.333333e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.442964e-06	k: 0	n:1510000
Cons ci ratio: 1.600330e+00	ci left: 1.075157e-06	ci right 7.727355e-06	k: 5	n:1510000
KS ci ratio: 7.575333e-02	ci left: 1.703127e-03	ci right 1.837868e-03	k: 2672	n:1510000
CDKN2A   1510000 perm   1440 sec   (1049 perm/sec)   p_kst 1.769536e-03   p_cons 3.311258e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.426891e-06	k: 0	n:1520000
Cons ci ratio: 1.600330e+00	ci left: 1.068084e-06	ci right 7.676517e-06	k: 5	n:1520000
KS ci ratio: 7.542937e-02	ci left: 1.706768e-03	ci right 1.841194e-03	k: 2695	n:1520000
CDKN2A   1520000 perm   1457 sec   (1044 perm/sec)   p_kst 1.773026e-03   p_cons 3.289474e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.411029e-06	k: 0	n:1530000
Cons ci ratio: 1.600330e+00	ci left: 1.061103e-06	ci right 7.626344e-06	k: 5	n:1530000
KS ci ratio: 7.523438e-02	ci left: 1.704590e-03	ci right 1.838483e-03	k: 2709	n:1530000
CDKN2A   1530000 perm   1473 sec   (1039 perm/sec)   p_kst 1.770588e-03   p_cons 3.267974e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.395373e-06	k: 0	n:1540000
Cons ci ratio: 1.600330e+00	ci left: 1.054213e-06	ci right 7.576823e-06	k: 5	n:1540000
KS ci ratio: 7.501330e-02	ci left: 1.703716e-03	ci right 1.837130e-03	k: 2725	n:1540000
CDKN2A   1540000 perm   1490 sec   (1034 perm/sec)   p_kst 1.769481e-03   p_cons 3.246753e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.379919e-06	k: 0	n:1550000
Cons ci ratio: 1.600330e+00	ci left: 1.047411e-06	ci right 7.527940e-06	k: 5	n:1550000
KS ci ratio: 7.461718e-02	ci left: 1.711084e-03	ci right 1.844337e-03	k: 2754	n:1550000
CDKN2A   1550000 perm   1506 sec   (1029 perm/sec)   p_kst 1.776774e-03   p_cons 3.225806e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.364664e-06	k: 0	n:1560000
Cons ci ratio: 1.600330e+00	ci left: 1.040697e-06	ci right 7.479684e-06	k: 5	n:1560000
KS ci ratio: 7.434775e-02	ci left: 1.712698e-03	ci right 1.845573e-03	k: 2774	n:1560000
CDKN2A   1560000 perm   1523 sec   (1024 perm/sec)   p_kst 1.778205e-03   p_cons 3.205128e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.349602e-06	k: 0	n:1570000
Cons ci ratio: 1.600330e+00	ci left: 1.034069e-06	ci right 7.432043e-06	k: 5	n:1570000
KS ci ratio: 7.416100e-02	ci left: 1.710540e-03	ci right 1.842901e-03	k: 2788	n:1570000
CDKN2A   1570000 perm   1540 sec   (1020 perm/sec)   p_kst 1.775796e-03   p_cons 3.184713e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.334731e-06	k: 0	n:1580000
Cons ci ratio: 1.600330e+00	ci left: 1.027524e-06	ci right 7.385005e-06	k: 5	n:1580000
KS ci ratio: 7.389646e-02	ci left: 1.712138e-03	ci right 1.844129e-03	k: 2808	n:1580000
CDKN2A   1580000 perm   1557 sec   (1015 perm/sec)   p_kst 1.777215e-03   p_cons 3.164557e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.320047e-06	k: 0	n:1590000
Cons ci ratio: 1.600330e+00	ci left: 1.021061e-06	ci right 7.338558e-06	k: 5	n:1590000
KS ci ratio: 7.364778e-02	ci left: 1.713099e-03	ci right 1.844701e-03	k: 2827	n:1590000
CDKN2A   1590000 perm   1574 sec   (1010 perm/sec)   p_kst 1.777987e-03   p_cons 3.144654e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.305547e-06	k: 0	n:1600000
Cons ci ratio: 1.600330e+00	ci left: 1.014680e-06	ci right 7.292692e-06	k: 5	n:1600000
KS ci ratio: 7.340159e-02	ci left: 1.714049e-03	ci right 1.845265e-03	k: 2846	n:1600000
CDKN2A   1600000 perm   1591 sec   (1006 perm/sec)   p_kst 1.778750e-03   p_cons 3.125000e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.291227e-06	k: 0	n:1610000
Cons ci ratio: 1.600330e+00	ci left: 1.008377e-06	ci right 7.247396e-06	k: 5	n:1610000
KS ci ratio: 7.320905e-02	ci left: 1.712549e-03	ci right 1.843291e-03	k: 2861	n:1610000
CDKN2A   1610000 perm   1608 sec   (1001 perm/sec)   p_kst 1.777019e-03   p_cons 3.105590e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.277083e-06	k: 0	n:1620000
Cons ci ratio: 1.600330e+00	ci left: 1.002153e-06	ci right 7.202659e-06	k: 5	n:1620000
KS ci ratio: 7.300531e-02	ci left: 1.711673e-03	ci right 1.841970e-03	k: 2877	n:1620000
CDKN2A   1620000 perm   1625 sec   (997 perm/sec)   p_kst 1.775926e-03   p_cons 3.086420e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.263114e-06	k: 0	n:1630000
Cons ci ratio: 1.600330e+00	ci left: 9.960046e-07	ci right 7.158471e-06	k: 5	n:1630000
KS ci ratio: 7.276548e-02	ci left: 1.712616e-03	ci right 1.842538e-03	k: 2896	n:1630000
CDKN2A   1630000 perm   1642 sec   (992 perm/sec)   p_kst 1.776687e-03   p_cons 3.067485e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.249314e-06	k: 0	n:1640000
Cons ci ratio: 1.600330e+00	ci left: 9.899314e-07	ci right 7.114822e-06	k: 5	n:1640000
KS ci ratio: 7.251555e-02	ci left: 1.714147e-03	ci right 1.843720e-03	k: 2916	n:1640000
CDKN2A   1640000 perm   1660 sec   (988 perm/sec)   p_kst 1.778049e-03   p_cons 3.048780e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.235682e-06	k: 0	n:1650000
Cons ci ratio: 1.600330e+00	ci left: 9.839319e-07	ci right 7.071702e-06	k: 5	n:1650000
KS ci ratio: 7.226818e-02	ci left: 1.715660e-03	ci right 1.844886e-03	k: 2936	n:1650000
CDKN2A   1650000 perm   1677 sec   (984 perm/sec)   p_kst 1.779394e-03   p_cons 3.030303e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.222214e-06	k: 0	n:1660000
Cons ci ratio: 1.600330e+00	ci left: 9.780045e-07	ci right 7.029102e-06	k: 5	n:1660000
KS ci ratio: 7.201112e-02	ci left: 1.717747e-03	ci right 1.846651e-03	k: 2957	n:1660000
CDKN2A   1660000 perm   1695 sec   (979 perm/sec)   p_kst 1.781325e-03   p_cons 3.012048e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.208907e-06	k: 0	n:1670000
Cons ci ratio: 1.600330e+00	ci left: 9.721482e-07	ci right 6.987011e-06	k: 5	n:1670000
KS ci ratio: 7.172062e-02	ci left: 1.721575e-03	ci right 1.850223e-03	k: 2981	n:1670000
CDKN2A   1670000 perm   1713 sec   (975 perm/sec)   p_kst 1.785030e-03   p_cons 2.994012e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.195759e-06	k: 0	n:1680000
Cons ci ratio: 1.600330e+00	ci left: 9.663616e-07	ci right 6.945422e-06	k: 5	n:1680000
KS ci ratio: 7.155293e-02	ci left: 1.719511e-03	ci right 1.847692e-03	k: 2995	n:1680000
CDKN2A   1680000 perm   1731 sec   (971 perm/sec)   p_kst 1.782738e-03   p_cons 2.976190e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.182767e-06	k: 0	n:1690000
Cons ci ratio: 1.481617e+00	ci left: 1.302897e-06	ci right 7.727483e-06	k: 6	n:1690000
KS ci ratio: 7.132710e-02	ci left: 1.720378e-03	ci right 1.848203e-03	k: 3014	n:1690000
CDKN2A   1690000 perm   1749 sec   (967 perm/sec)   p_kst 1.783432e-03   p_cons 3.550296e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.169927e-06	k: 0	n:1700000
Cons ci ratio: 1.481617e+00	ci left: 1.295233e-06	ci right 7.682028e-06	k: 6	n:1700000
KS ci ratio: 7.117392e-02	ci left: 1.717769e-03	ci right 1.845114e-03	k: 3027	n:1700000
CDKN2A   1700000 perm   1766 sec   (962 perm/sec)   p_kst 1.780588e-03   p_cons 3.529412e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.157237e-06	k: 0	n:1710000
Cons ci ratio: 1.481617e+00	ci left: 1.287659e-06	ci right 7.637104e-06	k: 6	n:1710000
KS ci ratio: 7.090503e-02	ci left: 1.720935e-03	ci right 1.848013e-03	k: 3050	n:1710000
CDKN2A   1710000 perm   1784 sec   (958 perm/sec)   p_kst 1.783626e-03   p_cons 3.508772e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.144695e-06	k: 0	n:1720000
Cons ci ratio: 1.481617e+00	ci left: 1.280172e-06	ci right 7.592702e-06	k: 6	n:1720000
KS ci ratio: 7.070833e-02	ci left: 1.720638e-03	ci right 1.847328e-03	k: 3067	n:1720000
CDKN2A   1720000 perm   1802 sec   (954 perm/sec)   p_kst 1.783140e-03   p_cons 3.488372e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.132298e-06	k: 0	n:1730000
Cons ci ratio: 1.481617e+00	ci left: 1.272772e-06	ci right 7.548814e-06	k: 6	n:1730000
KS ci ratio: 7.050181e-02	ci left: 1.720914e-03	ci right 1.847238e-03	k: 3085	n:1730000
CDKN2A   1730000 perm   1820 sec   (950 perm/sec)   p_kst 1.783237e-03   p_cons 3.468208e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.120043e-06	k: 0	n:1740000
Cons ci ratio: 1.481617e+00	ci left: 1.265457e-06	ci right 7.505430e-06	k: 6	n:1740000
KS ci ratio: 7.024044e-02	ci left: 1.724009e-03	ci right 1.850072e-03	k: 3108	n:1740000
CDKN2A   1740000 perm   1839 sec   (946 perm/sec)   p_kst 1.786207e-03   p_cons 3.448276e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.107929e-06	k: 0	n:1750000
Cons ci ratio: 1.481617e+00	ci left: 1.258226e-06	ci right 7.462542e-06	k: 6	n:1750000
KS ci ratio: 7.003799e-02	ci left: 1.724263e-03	ci right 1.849966e-03	k: 3126	n:1750000
CDKN2A   1750000 perm   1857 sec   (942 perm/sec)   p_kst 1.786286e-03   p_cons 3.428571e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.095952e-06	k: 0	n:1760000
Cons ci ratio: 1.481617e+00	ci left: 1.251077e-06	ci right 7.420141e-06	k: 6	n:1760000
KS ci ratio: 6.989295e-02	ci left: 1.721723e-03	ci right 1.846971e-03	k: 3139	n:1760000
CDKN2A   1760000 perm   1875 sec   (938 perm/sec)   p_kst 1.783523e-03   p_cons 3.409091e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.084111e-06	k: 0	n:1770000
Cons ci ratio: 1.481617e+00	ci left: 1.244009e-06	ci right 7.378219e-06	k: 6	n:1770000
KS ci ratio: 6.968242e-02	ci left: 1.722543e-03	ci right 1.847458e-03	k: 3158	n:1770000
CDKN2A   1770000 perm   1894 sec   (934 perm/sec)   p_kst 1.784181e-03   p_cons 3.389831e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.072402e-06	k: 0	n:1780000
Cons ci ratio: 1.481617e+00	ci left: 1.237020e-06	ci right 7.336769e-06	k: 6	n:1780000
KS ci ratio: 6.945190e-02	ci left: 1.724458e-03	ci right 1.849082e-03	k: 3179	n:1780000
CDKN2A   1780000 perm   1913 sec   (931 perm/sec)   p_kst 1.785955e-03   p_cons 3.370787e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.060824e-06	k: 0	n:1790000
Cons ci ratio: 1.481617e+00	ci left: 1.230109e-06	ci right 7.295781e-06	k: 6	n:1790000
KS ci ratio: 6.928873e-02	ci left: 1.723059e-03	ci right 1.847277e-03	k: 3194	n:1790000
CDKN2A   1790000 perm   1931 sec   (927 perm/sec)   p_kst 1.784358e-03   p_cons 3.351955e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.049375e-06	k: 0	n:1800000
Cons ci ratio: 1.481617e+00	ci left: 1.223276e-06	ci right 7.255249e-06	k: 6	n:1800000
KS ci ratio: 6.909436e-02	ci left: 1.723313e-03	ci right 1.847187e-03	k: 3212	n:1800000
CDKN2A   1800000 perm   1950 sec   (923 perm/sec)   p_kst 1.784444e-03   p_cons 3.333333e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.038053e-06	k: 0	n:1810000
Cons ci ratio: 1.481617e+00	ci left: 1.216517e-06	ci right 7.215165e-06	k: 6	n:1810000
KS ci ratio: 6.897652e-02	ci left: 1.719765e-03	ci right 1.843164e-03	k: 3223	n:1810000
CDKN2A   1810000 perm   1969 sec   (919 perm/sec)   p_kst 1.780663e-03   p_cons 3.314917e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.026855e-06	k: 0	n:1820000
Cons ci ratio: 1.481617e+00	ci left: 1.209833e-06	ci right 7.175521e-06	k: 6	n:1820000
KS ci ratio: 6.875291e-02	ci left: 1.721655e-03	ci right 1.844774e-03	k: 3244	n:1820000
CDKN2A   1820000 perm   1988 sec   (915 perm/sec)   p_kst 1.782418e-03   p_cons 3.296703e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.015779e-06	k: 0	n:1830000
Cons ci ratio: 1.481617e+00	ci left: 1.203222e-06	ci right 7.136311e-06	k: 6	n:1830000
KS ci ratio: 6.845800e-02	ci left: 1.727286e-03	ci right 1.850256e-03	k: 3272	n:1830000
CDKN2A   1830000 perm   2008 sec   (912 perm/sec)   p_kst 1.787978e-03   p_cons 3.278689e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.004824e-06	k: 0	n:1840000
Cons ci ratio: 1.481618e+00	ci left: 1.196683e-06	ci right 7.097527e-06	k: 6	n:1840000
KS ci ratio: 6.824976e-02	ci left: 1.728582e-03	ci right 1.851255e-03	k: 3292	n:1840000
CDKN2A   1840000 perm   2027 sec   (908 perm/sec)   p_kst 1.789130e-03   p_cons 3.260870e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.993987e-06	k: 0	n:1850000
Cons ci ratio: 1.481618e+00	ci left: 1.190214e-06	ci right 7.059162e-06	k: 6	n:1850000
KS ci ratio: 6.806399e-02	ci left: 1.728802e-03	ci right 1.851144e-03	k: 3310	n:1850000
CDKN2A   1850000 perm   2046 sec   (904 perm/sec)   p_kst 1.789189e-03   p_cons 3.243243e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.983267e-06	k: 0	n:1860000
Cons ci ratio: 1.481618e+00	ci left: 1.183815e-06	ci right 7.021209e-06	k: 6	n:1860000
KS ci ratio: 6.786951e-02	ci left: 1.729549e-03	ci right 1.851580e-03	k: 3329	n:1860000
CDKN2A   1860000 perm   2066 sec   (900 perm/sec)   p_kst 1.789785e-03   p_cons 3.225806e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.972661e-06	k: 0	n:1870000
Cons ci ratio: 1.481618e+00	ci left: 1.177484e-06	ci right 6.983663e-06	k: 6	n:1870000
KS ci ratio: 6.767669e-02	ci left: 1.730288e-03	ci right 1.852011e-03	k: 3348	n:1870000
CDKN2A   1870000 perm   2085 sec   (897 perm/sec)   p_kst 1.790374e-03   p_cons 3.208556e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.962168e-06	k: 0	n:1880000
Cons ci ratio: 1.481618e+00	ci left: 1.171221e-06	ci right 6.946516e-06	k: 6	n:1880000
KS ci ratio: 6.754581e-02	ci left: 1.727883e-03	ci right 1.849192e-03	k: 3361	n:1880000
CDKN2A   1880000 perm   2104 sec   (893 perm/sec)   p_kst 1.787766e-03   p_cons 3.191489e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.951786e-06	k: 0	n:1890000
Cons ci ratio: 1.481618e+00	ci left: 1.165024e-06	ci right 6.909762e-06	k: 6	n:1890000
KS ci ratio: 6.747580e-02	ci left: 1.722381e-03	ci right 1.843175e-03	k: 3368	n:1890000
CDKN2A   1890000 perm   2124 sec   (890 perm/sec)   p_kst 1.782011e-03   p_cons 3.174603e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.941514e-06	k: 0	n:1900000
Cons ci ratio: 1.481618e+00	ci left: 1.158893e-06	ci right 6.873395e-06	k: 6	n:1900000
KS ci ratio: 6.722670e-02	ci left: 1.726253e-03	ci right 1.846853e-03	k: 3393	n:1900000
CDKN2A   1900000 perm   2144 sec   (886 perm/sec)   p_kst 1.785789e-03   p_cons 3.157895e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.931349e-06	k: 0	n:1910000
Cons ci ratio: 1.481618e+00	ci left: 1.152825e-06	ci right 6.837408e-06	k: 6	n:1910000
KS ci ratio: 6.702946e-02	ci left: 1.727510e-03	ci right 1.847830e-03	k: 3413	n:1910000
CDKN2A   1910000 perm   2164 sec   (883 perm/sec)   p_kst 1.786911e-03   p_cons 3.141361e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.921290e-06	k: 0	n:1920000
Cons ci ratio: 1.481618e+00	ci left: 1.146821e-06	ci right 6.801797e-06	k: 6	n:1920000
KS ci ratio: 6.685345e-02	ci left: 1.727731e-03	ci right 1.847738e-03	k: 3431	n:1920000
CDKN2A   1920000 perm   2184 sec   (879 perm/sec)   p_kst 1.786979e-03   p_cons 3.125000e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.911335e-06	k: 0	n:1930000
Cons ci ratio: 1.481618e+00	ci left: 1.140879e-06	ci right 6.766554e-06	k: 6	n:1930000
KS ci ratio: 6.664013e-02	ci left: 1.729988e-03	ci right 1.849754e-03	k: 3453	n:1930000
CDKN2A   1930000 perm   2204 sec   (876 perm/sec)   p_kst 1.789119e-03   p_cons 3.108808e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.901482e-06	k: 0	n:1940000
Cons ci ratio: 1.481618e+00	ci left: 1.134998e-06	ci right 6.731675e-06	k: 6	n:1940000
KS ci ratio: 6.646716e-02	ci left: 1.730194e-03	ci right 1.849651e-03	k: 3471	n:1940000
CDKN2A   1940000 perm   2225 sec   (872 perm/sec)   p_kst 1.789175e-03   p_cons 3.092784e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.891731e-06	k: 0	n:1950000
Cons ci ratio: 1.481618e+00	ci left: 1.129177e-06	ci right 6.697154e-06	k: 6	n:1950000
KS ci ratio: 6.629553e-02	ci left: 1.730399e-03	ci right 1.849550e-03	k: 3489	n:1950000
CDKN2A   1950000 perm   2245 sec   (869 perm/sec)   p_kst 1.789231e-03   p_cons 3.076923e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.882080e-06	k: 0	n:1960000
Cons ci ratio: 1.481618e+00	ci left: 1.123416e-06	ci right 6.662985e-06	k: 6	n:1960000
KS ci ratio: 6.604982e-02	ci left: 1.734616e-03	ci right 1.853598e-03	k: 3515	n:1960000
CDKN2A   1960000 perm   2265 sec   (865 perm/sec)   p_kst 1.793367e-03   p_cons 3.061224e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.872526e-06	k: 0	n:1970000
Cons ci ratio: 1.481618e+00	ci left: 1.117714e-06	ci right 6.629163e-06	k: 6	n:1970000
KS ci ratio: 6.592813e-02	ci left: 1.732301e-03	ci right 1.850897e-03	k: 3528	n:1970000
CDKN2A   1970000 perm   2285 sec   (862 perm/sec)   p_kst 1.790863e-03   p_cons 3.045685e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.863069e-06	k: 0	n:1980000
Cons ci ratio: 1.481618e+00	ci left: 1.112069e-06	ci right 6.595682e-06	k: 6	n:1980000
KS ci ratio: 6.578851e-02	ci left: 1.731003e-03	ci right 1.849250e-03	k: 3543	n:1980000
CDKN2A   1980000 perm   2306 sec   (859 perm/sec)   p_kst 1.789394e-03   p_cons 3.030303e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.853707e-06	k: 0	n:1990000
Cons ci ratio: 1.481618e+00	ci left: 1.106480e-06	ci right 6.562538e-06	k: 6	n:1990000
KS ci ratio: 6.557599e-02	ci left: 1.733673e-03	ci right 1.851704e-03	k: 3566	n:1990000
CDKN2A   1990000 perm   2326 sec   (856 perm/sec)   p_kst 1.791960e-03   p_cons 3.015075e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.844438e-06	k: 0	n:2000000
Cons ci ratio: 1.481618e+00	ci left: 1.100948e-06	ci right 6.529725e-06	k: 6	n:2000000
KS ci ratio: 6.537462e-02	ci left: 1.735824e-03	ci right 1.853626e-03	k: 3588	n:2000000
CDKN2A   2000000 perm   2346 sec   (852 perm/sec)   p_kst 1.794000e-03   p_cons 3.000000e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.835262e-06	k: 0	n:2010000
Cons ci ratio: 1.481618e+00	ci left: 1.095471e-06	ci right 6.497239e-06	k: 6	n:2010000
KS ci ratio: 6.518415e-02	ci left: 1.737466e-03	ci right 1.855022e-03	k: 3609	n:2010000
CDKN2A   2010000 perm   2367 sec   (849 perm/sec)   p_kst 1.795522e-03   p_cons 2.985075e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.826176e-06	k: 0	n:2020000
Cons ci ratio: 1.481618e+00	ci left: 1.090047e-06	ci right 6.465075e-06	k: 6	n:2020000
KS ci ratio: 6.504021e-02	ci left: 1.736656e-03	ci right 1.853888e-03	k: 3625	n:2020000
CDKN2A   2020000 perm   2388 sec   (846 perm/sec)   p_kst 1.794554e-03   p_cons 2.970297e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.817180e-06	k: 0	n:2030000
Cons ci ratio: 1.481618e+00	ci left: 1.084678e-06	ci right 6.433227e-06	k: 6	n:2030000
KS ci ratio: 6.486154e-02	ci left: 1.737793e-03	ci right 1.854768e-03	k: 3645	n:2030000
CDKN2A   2030000 perm   2409 sec   (843 perm/sec)   p_kst 1.795567e-03   p_cons 2.955665e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.808273e-06	k: 0	n:2040000
Cons ci ratio: 1.481618e+00	ci left: 1.079361e-06	ci right 6.401692e-06	k: 6	n:2040000
KS ci ratio: 6.472858e-02	ci left: 1.736509e-03	ci right 1.853148e-03	k: 3660	n:2040000
CDKN2A   2040000 perm   2430 sec   (840 perm/sec)   p_kst 1.794118e-03   p_cons 2.941176e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.799452e-06	k: 0	n:2050000
Cons ci ratio: 1.481618e+00	ci left: 1.074095e-06	ci right 6.370464e-06	k: 6	n:2050000
KS ci ratio: 6.457003e-02	ci left: 1.736676e-03	ci right 1.853031e-03	k: 3678	n:2050000
CDKN2A   2050000 perm   2451 sec   (837 perm/sec)   p_kst 1.794146e-03   p_cons 2.926829e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.790717e-06	k: 0	n:2060000
Cons ci ratio: 1.481618e+00	ci left: 1.068881e-06	ci right 6.339540e-06	k: 6	n:2060000
KS ci ratio: 6.443885e-02	ci left: 1.735410e-03	ci right 1.851435e-03	k: 3693	n:2060000
CDKN2A   2060000 perm   2472 sec   (833 perm/sec)   p_kst 1.792718e-03   p_cons 2.912621e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.782066e-06	k: 0	n:2070000
Cons ci ratio: 1.481618e+00	ci left: 1.063718e-06	ci right 6.308914e-06	k: 6	n:2070000
KS ci ratio: 6.432584e-02	ci left: 1.733205e-03	ci right 1.848872e-03	k: 3706	n:2070000
CDKN2A   2070000 perm   2493 sec   (830 perm/sec)   p_kst 1.790338e-03   p_cons 2.898551e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.773498e-06	k: 0	n:2080000
Cons ci ratio: 1.481618e+00	ci left: 1.058604e-06	ci right 6.278583e-06	k: 6	n:2080000
KS ci ratio: 6.417023e-02	ci left: 1.733387e-03	ci right 1.848776e-03	k: 3724	n:2080000
CDKN2A   2080000 perm   2514 sec   (827 perm/sec)   p_kst 1.790385e-03   p_cons 2.884615e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.765013e-06	k: 0	n:2090000
Cons ci ratio: 1.481618e+00	ci left: 1.053539e-06	ci right 6.248542e-06	k: 6	n:2090000
KS ci ratio: 6.401575e-02	ci left: 1.733568e-03	ci right 1.848681e-03	k: 3742	n:2090000
CDKN2A   2090000 perm   2536 sec   (824 perm/sec)   p_kst 1.790431e-03   p_cons 2.870813e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.756608e-06	k: 0	n:2100000
Cons ci ratio: 1.481618e+00	ci left: 1.048522e-06	ci right 6.218787e-06	k: 6	n:2100000
KS ci ratio: 6.385387e-02	ci left: 1.734216e-03	ci right 1.849070e-03	k: 3761	n:2100000
CDKN2A   2100000 perm   2557 sec   (821 perm/sec)   p_kst 1.790952e-03   p_cons 2.857143e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.748283e-06	k: 0	n:2110000
Cons ci ratio: 1.481618e+00	ci left: 1.043552e-06	ci right 6.189314e-06	k: 6	n:2110000
KS ci ratio: 6.370165e-02	ci left: 1.734392e-03	ci right 1.848973e-03	k: 3779	n:2110000
CDKN2A   2110000 perm   2578 sec   (818 perm/sec)   p_kst 1.790995e-03   p_cons 2.843602e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.740036e-06	k: 0	n:2120000
Cons ci ratio: 1.481618e+00	ci left: 1.038630e-06	ci right 6.160119e-06	k: 6	n:2120000
KS ci ratio: 6.355890e-02	ci left: 1.734102e-03	ci right 1.848398e-03	k: 3796	n:2120000
CDKN2A   2120000 perm   2600 sec   (815 perm/sec)   p_kst 1.790566e-03   p_cons 2.830189e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.731867e-06	k: 0	n:2130000
Cons ci ratio: 1.481618e+00	ci left: 1.033754e-06	ci right 6.131198e-06	k: 6	n:2130000
KS ci ratio: 6.342544e-02	ci left: 1.733353e-03	ci right 1.847351e-03	k: 3812	n:2130000
CDKN2A   2130000 perm   2622 sec   (812 perm/sec)   p_kst 1.789671e-03   p_cons 2.816901e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.723774e-06	k: 0	n:2140000
Cons ci ratio: 1.385926e+00	ci left: 1.315124e-06	ci right 6.739556e-06	k: 7	n:2140000
KS ci ratio: 6.332596e-02	ci left: 1.730772e-03	ci right 1.844415e-03	k: 3824	n:2140000
CDKN2A   2140000 perm   2644 sec   (809 perm/sec)   p_kst 1.786916e-03   p_cons 3.271028e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.715756e-06	k: 0	n:2150000
Cons ci ratio: 1.385926e+00	ci left: 1.309007e-06	ci right 6.708210e-06	k: 7	n:2150000
KS ci ratio: 6.315279e-02	ci left: 1.732335e-03	ci right 1.845758e-03	k: 3845	n:2150000
CDKN2A   2150000 perm   2666 sec   (806 perm/sec)   p_kst 1.788372e-03   p_cons 3.255814e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.707813e-06	k: 0	n:2160000
Cons ci ratio: 1.385926e+00	ci left: 1.302947e-06	ci right 6.677153e-06	k: 7	n:2160000
KS ci ratio: 6.300552e-02	ci left: 1.732517e-03	ci right 1.845678e-03	k: 3863	n:2160000
CDKN2A   2160000 perm   2688 sec   (804 perm/sec)   p_kst 1.788426e-03   p_cons 3.240741e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.699943e-06	k: 0	n:2170000
Cons ci ratio: 1.385926e+00	ci left: 1.296942e-06	ci right 6.646383e-06	k: 7	n:2170000
KS ci ratio: 6.123710e-02	ci left: 1.827065e-03	ci right 1.942934e-03	k: 4089	n:2170000
CDKN2A   2170000 perm   2710 sec   (801 perm/sec)   p_kst 1.884332e-03   p_cons 3.225806e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.692145e-06	k: 0	n:2180000
Cons ci ratio: 1.385926e+00	ci left: 1.290993e-06	ci right 6.615895e-06	k: 7	n:2180000
KS ci ratio: 6.116250e-02	ci left: 1.823201e-03	ci right 1.938679e-03	k: 4099	n:2180000
CDKN2A   2180000 perm   2732 sec   (798 perm/sec)   p_kst 1.880275e-03   p_cons 3.211009e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.684418e-06	k: 0	n:2190000
Cons ci ratio: 1.385926e+00	ci left: 1.285098e-06	ci right 6.585685e-06	k: 7	n:2190000
KS ci ratio: 6.104355e-02	ci left: 1.822070e-03	ci right 1.937244e-03	k: 4115	n:2190000
CDKN2A   2190000 perm   2754 sec   (795 perm/sec)   p_kst 1.878995e-03   p_cons 3.196347e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.676762e-06	k: 0	n:2200000
Cons ci ratio: 1.306664e+00	ci left: 1.569925e-06	ci right 7.165073e-06	k: 8	n:2200000
KS ci ratio: 6.094746e-02	ci left: 1.819607e-03	ci right 1.934438e-03	k: 4128	n:2200000
CDKN2A   2200000 perm   2776 sec   (792 perm/sec)   p_kst 1.876364e-03   p_cons 3.636364e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.669175e-06	k: 0	n:2210000
Cons ci ratio: 1.306664e+00	ci left: 1.562821e-06	ci right 7.132652e-06	k: 8	n:2210000
KS ci ratio: 6.081505e-02	ci left: 1.819395e-03	ci right 1.933953e-03	k: 4146	n:2210000
CDKN2A   2210000 perm   2798 sec   (790 perm/sec)   p_kst 1.876018e-03   p_cons 3.619910e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.661656e-06	k: 0	n:2220000
Cons ci ratio: 1.306664e+00	ci left: 1.555782e-06	ci right 7.100523e-06	k: 8	n:2220000
KS ci ratio: 6.069811e-02	ci left: 1.818297e-03	ci right 1.932558e-03	k: 4162	n:2220000
CDKN2A   2220000 perm   2821 sec   (787 perm/sec)   p_kst 1.874775e-03   p_cons 3.603604e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.654205e-06	k: 0	n:2230000
Cons ci ratio: 1.306664e+00	ci left: 1.548805e-06	ci right 7.068682e-06	k: 8	n:2230000
KS ci ratio: 6.051659e-02	ci left: 1.821184e-03	ci right 1.935273e-03	k: 4187	n:2230000
CDKN2A   2230000 perm   2844 sec   (784 perm/sec)   p_kst 1.877578e-03   p_cons 3.587444e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.646820e-06	k: 0	n:2240000
Cons ci ratio: 1.306664e+00	ci left: 1.541891e-06	ci right 7.037126e-06	k: 8	n:2240000
KS ci ratio: 6.040856e-02	ci left: 1.819649e-03	ci right 1.933431e-03	k: 4202	n:2240000
CDKN2A   2240000 perm   2867 sec   (781 perm/sec)   p_kst 1.875893e-03   p_cons 3.571429e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.639501e-06	k: 0	n:2250000
Cons ci ratio: 1.306664e+00	ci left: 1.535038e-06	ci right 7.005850e-06	k: 8	n:2250000
KS ci ratio: 6.028678e-02	ci left: 1.819003e-03	ci right 1.932507e-03	k: 4219	n:2250000
CDKN2A   2250000 perm   2889 sec   (779 perm/sec)   p_kst 1.875111e-03   p_cons 3.555556e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.632246e-06	k: 0	n:2260000
Cons ci ratio: 1.306664e+00	ci left: 1.528246e-06	ci right 6.974851e-06	k: 8	n:2260000
KS ci ratio: 6.022986e-02	ci left: 1.814441e-03	ci right 1.927550e-03	k: 4227	n:2260000
CDKN2A   2260000 perm   2913 sec   (776 perm/sec)   p_kst 1.870354e-03   p_cons 3.539823e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.625056e-06	k: 0	n:2270000
Cons ci ratio: 1.306664e+00	ci left: 1.521513e-06	ci right 6.944124e-06	k: 8	n:2270000
KS ci ratio: 6.006665e-02	ci left: 1.816427e-03	ci right 1.929343e-03	k: 4250	n:2270000
CDKN2A   2270000 perm   2935 sec   (773 perm/sec)   p_kst 1.872247e-03   p_cons 3.524229e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.617928e-06	k: 0	n:2280000
Cons ci ratio: 1.306664e+00	ci left: 1.514840e-06	ci right 6.913668e-06	k: 8	n:2280000
KS ci ratio: 5.990475e-02	ci left: 1.818397e-03	ci right 1.931120e-03	k: 4273	n:2280000
CDKN2A   2280000 perm   2959 sec   (771 perm/sec)   p_kst 1.874123e-03   p_cons 3.508772e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.610863e-06	k: 0	n:2290000
Cons ci ratio: 1.306664e+00	ci left: 1.508225e-06	ci right 6.883477e-06	k: 8	n:2290000
KS ci ratio: 5.977901e-02	ci left: 1.818199e-03	ci right 1.930665e-03	k: 4291	n:2290000
CDKN2A   2290000 perm   2982 sec   (768 perm/sec)   p_kst 1.873799e-03   p_cons 3.493450e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.603859e-06	k: 0	n:2300000
Cons ci ratio: 1.306664e+00	ci left: 1.501667e-06	ci right 6.853549e-06	k: 8	n:2300000
KS ci ratio: 5.964713e-02	ci left: 1.818431e-03	ci right 1.930655e-03	k: 4310	n:2300000
CDKN2A   2300000 perm   3005 sec   (765 perm/sec)   p_kst 1.873913e-03   p_cons 3.478261e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.596916e-06	k: 0	n:2310000
Cons ci ratio: 1.306664e+00	ci left: 1.495167e-06	ci right 6.823880e-06	k: 8	n:2310000
KS ci ratio: 5.953679e-02	ci left: 1.817383e-03	ci right 1.929327e-03	k: 4326	n:2310000
CDKN2A   2310000 perm   3028 sec   (763 perm/sec)   p_kst 1.872727e-03   p_cons 3.463203e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.590033e-06	k: 0	n:2320000
Cons ci ratio: 1.306664e+00	ci left: 1.488722e-06	ci right 6.794467e-06	k: 8	n:2320000
KS ci ratio: 5.941335e-02	ci left: 1.817192e-03	ci right 1.928885e-03	k: 4344	n:2320000
CDKN2A   2320000 perm   3051 sec   (760 perm/sec)   p_kst 1.872414e-03   p_cons 3.448276e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.583209e-06	k: 0	n:2330000
Cons ci ratio: 1.306664e+00	ci left: 1.482333e-06	ci right 6.765306e-06	k: 8	n:2330000
KS ci ratio: 5.927026e-02	ci left: 1.818272e-03	ci right 1.929753e-03	k: 4365	n:2330000
CDKN2A   2330000 perm   3075 sec   (758 perm/sec)   p_kst 1.873391e-03   p_cons 3.433476e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.576443e-06	k: 0	n:2340000
Cons ci ratio: 1.306664e+00	ci left: 1.475998e-06	ci right 6.736394e-06	k: 8	n:2340000
KS ci ratio: 5.909447e-02	ci left: 1.821449e-03	ci right 1.932781e-03	k: 4391	n:2340000
CDKN2A   2340000 perm   3099 sec   (755 perm/sec)   p_kst 1.876496e-03   p_cons 3.418803e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.569735e-06	k: 0	n:2350000
Cons ci ratio: 1.306664e+00	ci left: 1.469717e-06	ci right 6.707729e-06	k: 8	n:2350000
KS ci ratio: 5.894029e-02	ci left: 1.823341e-03	ci right 1.934488e-03	k: 4414	n:2350000
CDKN2A   2350000 perm   3122 sec   (753 perm/sec)   p_kst 1.878298e-03   p_cons 3.404255e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.563083e-06	k: 0	n:2360000
Cons ci ratio: 1.306664e+00	ci left: 1.463489e-06	ci right 6.679306e-06	k: 8	n:2360000
KS ci ratio: 5.883382e-02	ci left: 1.822295e-03	ci right 1.933171e-03	k: 4430	n:2360000
CDKN2A   2360000 perm   3146 sec   (750 perm/sec)   p_kst 1.877119e-03   p_cons 3.389831e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.556488e-06	k: 0	n:2370000
Cons ci ratio: 1.306664e+00	ci left: 1.457314e-06	ci right 6.651124e-06	k: 8	n:2370000
KS ci ratio: 5.872791e-02	ci left: 1.821257e-03	ci right 1.931864e-03	k: 4446	n:2370000
CDKN2A   2370000 perm   3169 sec   (748 perm/sec)   p_kst 1.875949e-03   p_cons 3.375527e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.549948e-06	k: 0	n:2380000
Cons ci ratio: 1.306664e+00	ci left: 1.451191e-06	ci right 6.623178e-06	k: 8	n:2380000
KS ci ratio: 5.860285e-02	ci left: 1.821471e-03	ci right 1.931847e-03	k: 4465	n:2380000
CDKN2A   2380000 perm   3194 sec   (745 perm/sec)   p_kst 1.876050e-03   p_cons 3.361345e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.543463e-06	k: 0	n:2390000
Cons ci ratio: 1.306664e+00	ci left: 1.445119e-06	ci right 6.595466e-06	k: 8	n:2390000
KS ci ratio: 5.846553e-02	ci left: 1.822508e-03	ci right 1.932680e-03	k: 4486	n:2390000
CDKN2A   2390000 perm   3218 sec   (743 perm/sec)   p_kst 1.876987e-03   p_cons 3.347280e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.537032e-06	k: 0	n:2400000
Cons ci ratio: 1.306664e+00	ci left: 1.439098e-06	ci right 6.567985e-06	k: 8	n:2400000
KS ci ratio: 5.839409e-02	ci left: 1.819430e-03	ci right 1.929277e-03	k: 4497	n:2400000
CDKN2A   2400000 perm   3242 sec   (740 perm/sec)   p_kst 1.873750e-03   p_cons 3.333333e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.530654e-06	k: 0	n:2410000
Cons ci ratio: 1.306664e+00	ci left: 1.433126e-06	ci right 6.540732e-06	k: 8	n:2410000
KS ci ratio: 5.827761e-02	ci left: 1.819241e-03	ci right 1.928850e-03	k: 4515	n:2410000
CDKN2A   2410000 perm   3266 sec   (738 perm/sec)   p_kst 1.873444e-03   p_cons 3.319502e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.524329e-06	k: 0	n:2420000
Cons ci ratio: 1.306664e+00	ci left: 1.427204e-06	ci right 6.513704e-06	k: 8	n:2420000
KS ci ratio: 5.814255e-02	ci left: 1.820275e-03	ci right 1.929683e-03	k: 4536	n:2420000
CDKN2A   2420000 perm   3290 sec   (736 perm/sec)   p_kst 1.874380e-03   p_cons 3.305785e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.518056e-06	k: 0	n:2430000
Cons ci ratio: 1.306664e+00	ci left: 1.421331e-06	ci right 6.486899e-06	k: 8	n:2430000
KS ci ratio: 5.802757e-02	ci left: 1.820084e-03	ci right 1.929257e-03	k: 4554	n:2430000
CDKN2A   2430000 perm   3314 sec   (733 perm/sec)   p_kst 1.874074e-03   p_cons 3.292181e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.511835e-06	k: 0	n:2440000
Cons ci ratio: 1.306664e+00	ci left: 1.415506e-06	ci right 6.460313e-06	k: 8	n:2440000
KS ci ratio: 5.790692e-02	ci left: 1.820298e-03	ci right 1.929250e-03	k: 4573	n:2440000
CDKN2A   2440000 perm   3339 sec   (731 perm/sec)   p_kst 1.874180e-03   p_cons 3.278689e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.505664e-06	k: 0	n:2450000
Cons ci ratio: 1.306664e+00	ci left: 1.409728e-06	ci right 6.433945e-06	k: 8	n:2450000
KS ci ratio: 5.780594e-02	ci left: 1.819305e-03	ci right 1.928001e-03	k: 4589	n:2450000
CDKN2A   2450000 perm   3363 sec   (728 perm/sec)   p_kst 1.873061e-03   p_cons 3.265306e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.499543e-06	k: 0	n:2460000
Cons ci ratio: 1.306664e+00	ci left: 1.403998e-06	ci right 6.407790e-06	k: 8	n:2460000
KS ci ratio: 5.771176e-02	ci left: 1.817919e-03	ci right 1.926349e-03	k: 4604	n:2460000
CDKN2A   2460000 perm   3388 sec   (726 perm/sec)   p_kst 1.871545e-03   p_cons 3.252033e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.493472e-06	k: 0	n:2470000
Cons ci ratio: 1.306664e+00	ci left: 1.398314e-06	ci right 6.381848e-06	k: 8	n:2470000
KS ci ratio: 5.759930e-02	ci left: 1.817741e-03	ci right 1.925942e-03	k: 4622	n:2470000
CDKN2A   2470000 perm   3413 sec   (724 perm/sec)   p_kst 1.871255e-03   p_cons 3.238866e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.487450e-06	k: 0	n:2480000
Cons ci ratio: 1.306664e+00	ci left: 1.392675e-06	ci right 6.356115e-06	k: 8	n:2480000
KS ci ratio: 5.751234e-02	ci left: 1.815975e-03	ci right 1.923903e-03	k: 4636	n:2480000
CDKN2A   2480000 perm   3438 sec   (721 perm/sec)   p_kst 1.869355e-03   p_cons 3.225806e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.481477e-06	k: 0	n:2490000
Cons ci ratio: 1.306664e+00	ci left: 1.387082e-06	ci right 6.330588e-06	k: 8	n:2490000
KS ci ratio: 5.738870e-02	ci left: 1.816599e-03	ci right 1.924324e-03	k: 4656	n:2490000
CDKN2A   2490000 perm   3463 sec   (719 perm/sec)   p_kst 1.869880e-03   p_cons 3.212851e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.475551e-06	k: 0	n:2500000
Cons ci ratio: 1.306664e+00	ci left: 1.381534e-06	ci right 6.305266e-06	k: 8	n:2500000
KS ci ratio: 5.725971e-02	ci left: 1.817612e-03	ci right 1.925147e-03	k: 4677	n:2500000
CDKN2A   2500000 perm   3488 sec   (717 perm/sec)   p_kst 1.870800e-03   p_cons 3.200000e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.469672e-06	k: 0	n:2510000
Cons ci ratio: 1.306664e+00	ci left: 1.376030e-06	ci right 6.280145e-06	k: 8	n:2510000
KS ci ratio: 5.713769e-02	ci left: 1.818225e-03	ci right 1.925559e-03	k: 4697	n:2510000
CDKN2A   2510000 perm   3513 sec   (714 perm/sec)   p_kst 1.871315e-03   p_cons 3.187251e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.463840e-06	k: 0	n:2520000
Cons ci ratio: 1.306664e+00	ci left: 1.370569e-06	ci right 6.255224e-06	k: 8	n:2520000
KS ci ratio: 5.702855e-02	ci left: 1.818051e-03	ci right 1.925163e-03	k: 4715	n:2520000
CDKN2A   2520000 perm   3538 sec   (712 perm/sec)   p_kst 1.871032e-03   p_cons 3.174603e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.458054e-06	k: 0	n:2530000
Cons ci ratio: 1.306664e+00	ci left: 1.365152e-06	ci right 6.230500e-06	k: 8	n:2530000
KS ci ratio: 5.688393e-02	ci left: 1.820216e-03	ci right 1.927175e-03	k: 4739	n:2530000
CDKN2A   2530000 perm   3563 sec   (710 perm/sec)   p_kst 1.873123e-03   p_cons 3.162055e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.452314e-06	k: 0	n:2540000
Cons ci ratio: 1.306664e+00	ci left: 1.359777e-06	ci right 6.205971e-06	k: 8	n:2540000
KS ci ratio: 5.678820e-02	ci left: 1.819259e-03	ci right 1.925976e-03	k: 4755	n:2540000
CDKN2A   2540000 perm   3589 sec   (708 perm/sec)   p_kst 1.872047e-03   p_cons 3.149606e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.446618e-06	k: 0	n:2550000
Cons ci ratio: 1.306664e+00	ci left: 1.354445e-06	ci right 6.181633e-06	k: 8	n:2550000
KS ci ratio: 5.667510e-02	ci left: 1.819470e-03	ci right 1.925980e-03	k: 4774	n:2550000
CDKN2A   2550000 perm   3614 sec   (706 perm/sec)   p_kst 1.872157e-03   p_cons 3.137255e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.440968e-06	k: 0	n:2560000
Cons ci ratio: 1.306664e+00	ci left: 1.349154e-06	ci right 6.157486e-06	k: 8	n:2560000
KS ci ratio: 5.653315e-02	ci left: 1.821605e-03	ci right 1.927964e-03	k: 4798	n:2560000
CDKN2A   2560000 perm   3640 sec   (703 perm/sec)   p_kst 1.874219e-03   p_cons 3.125000e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.435361e-06	k: 0	n:2570000
Cons ci ratio: 1.306664e+00	ci left: 1.343904e-06	ci right 6.133527e-06	k: 8	n:2570000
KS ci ratio: 5.639811e-02	ci left: 1.823340e-03	ci right 1.929538e-03	k: 4821	n:2570000
CDKN2A   2570000 perm   3665 sec   (701 perm/sec)   p_kst 1.875875e-03   p_cons 3.112840e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.429797e-06	k: 0	n:2580000
Cons ci ratio: 1.306664e+00	ci left: 1.338696e-06	ci right 6.109754e-06	k: 8	n:2580000
KS ci ratio: 5.629315e-02	ci left: 1.823152e-03	ci right 1.929134e-03	k: 4839	n:2580000
CDKN2A   2580000 perm   3691 sec   (699 perm/sec)   p_kst 1.875581e-03   p_cons 3.100775e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.424277e-06	k: 0	n:2590000
Cons ci ratio: 1.306664e+00	ci left: 1.333527e-06	ci right 6.086164e-06	k: 8	n:2590000
KS ci ratio: 5.620616e-02	ci left: 1.821823e-03	ci right 1.927559e-03	k: 4854	n:2590000
CDKN2A   2590000 perm   3717 sec   (697 perm/sec)   p_kst 1.874131e-03   p_cons 3.088803e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.418799e-06	k: 0	n:2600000
Cons ci ratio: 1.306664e+00	ci left: 1.328398e-06	ci right 6.062756e-06	k: 8	n:2600000
KS ci ratio: 5.608497e-02	ci left: 1.822779e-03	ci right 1.928335e-03	k: 4875	n:2600000
CDKN2A   2600000 perm   3743 sec   (695 perm/sec)   p_kst 1.875000e-03   p_cons 3.076923e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.413363e-06	k: 0	n:2610000
Cons ci ratio: 1.306664e+00	ci left: 1.323308e-06	ci right 6.039527e-06	k: 8	n:2610000
KS ci ratio: 5.594168e-02	ci left: 1.825240e-03	ci right 1.930660e-03	k: 4900	n:2610000
CDKN2A   2610000 perm   3769 sec   (693 perm/sec)   p_kst 1.877395e-03   p_cons 3.065134e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.407968e-06	k: 0	n:2620000
Cons ci ratio: 1.306664e+00	ci left: 1.318257e-06	ci right 6.016476e-06	k: 8	n:2620000
KS ci ratio: 5.581083e-02	ci left: 1.826929e-03	ci right 1.932192e-03	k: 4923	n:2620000
CDKN2A   2620000 perm   3795 sec   (690 perm/sec)   p_kst 1.879008e-03   p_cons 3.053435e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.402615e-06	k: 0	n:2630000
Cons ci ratio: 1.306664e+00	ci left: 1.313245e-06	ci right 5.993599e-06	k: 8	n:2630000
KS ci ratio: 5.569782e-02	ci left: 1.827481e-03	ci right 1.932556e-03	k: 4943	n:2630000
CDKN2A   2630000 perm   3821 sec   (688 perm/sec)   p_kst 1.879468e-03   p_cons 3.041825e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.397302e-06	k: 0	n:2640000
Cons ci ratio: 1.306664e+00	ci left: 1.308271e-06	ci right 5.970896e-06	k: 8	n:2640000
KS ci ratio: 5.559110e-02	ci left: 1.827656e-03	ci right 1.932533e-03	k: 4962	n:2640000
CDKN2A   2640000 perm   3847 sec   (686 perm/sec)   p_kst 1.879545e-03   p_cons 3.030303e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.392029e-06	k: 0	n:2650000
Cons ci ratio: 1.239610e+00	ci left: 1.552972e-06	ci right 6.447086e-06	k: 9	n:2650000
KS ci ratio: 5.552408e-02	ci left: 1.825224e-03	ci right 1.929831e-03	k: 4974	n:2650000
CDKN2A   2650000 perm   3873 sec   (684 perm/sec)   p_kst 1.876981e-03   p_cons 3.396226e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.386796e-06	k: 0	n:2660000
Cons ci ratio: 1.239610e+00	ci left: 1.547134e-06	ci right 6.422849e-06	k: 9	n:2660000
KS ci ratio: 5.540724e-02	ci left: 1.826148e-03	ci right 1.930580e-03	k: 4995	n:2660000
CDKN2A   2660000 perm   3900 sec   (682 perm/sec)   p_kst 1.877820e-03   p_cons 3.383459e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.381602e-06	k: 0	n:2670000
Cons ci ratio: 1.239610e+00	ci left: 1.541339e-06	ci right 6.398793e-06	k: 9	n:2670000
KS ci ratio: 5.532982e-02	ci left: 1.824479e-03	ci right 1.928666e-03	k: 5009	n:2670000
CDKN2A   2670000 perm   3926 sec   (680 perm/sec)   p_kst 1.876030e-03   p_cons 3.370787e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.376447e-06	k: 0	n:2680000
Cons ci ratio: 1.239610e+00	ci left: 1.535588e-06	ci right 6.374917e-06	k: 9	n:2680000
KS ci ratio: 5.523070e-02	ci left: 1.824295e-03	ci right 1.928279e-03	k: 5027	n:2680000
CDKN2A   2680000 perm   3953 sec   (678 perm/sec)   p_kst 1.875746e-03   p_cons 3.358209e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.371330e-06	k: 0	n:2690000
Cons ci ratio: 1.239610e+00	ci left: 1.529880e-06	ci right 6.351219e-06	k: 9	n:2690000
KS ci ratio: 5.513759e-02	ci left: 1.823746e-03	ci right 1.927517e-03	k: 5044	n:2690000
CDKN2A   2690000 perm   3980 sec   (676 perm/sec)   p_kst 1.875093e-03   p_cons 3.345725e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.366251e-06	k: 0	n:2700000
Cons ci ratio: 1.239610e+00	ci left: 1.524213e-06	ci right 6.327696e-06	k: 9	n:2700000
KS ci ratio: 5.506674e-02	ci left: 1.821740e-03	ci right 1.925259e-03	k: 5057	n:2700000
CDKN2A   2700000 perm   4007 sec   (674 perm/sec)   p_kst 1.872963e-03   p_cons 3.333333e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.361209e-06	k: 0	n:2710000
Cons ci ratio: 1.239610e+00	ci left: 1.518589e-06	ci right 6.304346e-06	k: 9	n:2710000
KS ci ratio: 5.495276e-02	ci left: 1.822660e-03	ci right 1.926011e-03	k: 5078	n:2710000
CDKN2A   2710000 perm   4034 sec   (672 perm/sec)   p_kst 1.873801e-03   p_cons 3.321033e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.356205e-06	k: 0	n:2720000
Cons ci ratio: 1.239610e+00	ci left: 1.513006e-06	ci right 6.281168e-06	k: 9	n:2720000
KS ci ratio: 5.485026e-02	ci left: 1.822848e-03	ci right 1.926011e-03	k: 5097	n:2720000
CDKN2A   2720000 perm   4061 sec   (670 perm/sec)   p_kst 1.873897e-03   p_cons 3.308824e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.351237e-06	k: 0	n:2730000
Cons ci ratio: 1.239610e+00	ci left: 1.507464e-06	ci right 6.258160e-06	k: 9	n:2730000
KS ci ratio: 5.472155e-02	ci left: 1.824842e-03	ci right 1.927868e-03	k: 5121	n:2730000
CDKN2A   2730000 perm   4089 sec   (668 perm/sec)   p_kst 1.875824e-03   p_cons 3.296703e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.346305e-06	k: 0	n:2740000
Cons ci ratio: 1.239610e+00	ci left: 1.501962e-06	ci right 6.235321e-06	k: 9	n:2740000
KS ci ratio: 5.464164e-02	ci left: 1.823582e-03	ci right 1.926381e-03	k: 5136	n:2740000
CDKN2A   2740000 perm   4116 sec   (666 perm/sec)   p_kst 1.874453e-03   p_cons 3.284672e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.341410e-06	k: 0	n:2750000
Cons ci ratio: 1.239610e+00	ci left: 1.496500e-06	ci right 6.212647e-06	k: 9	n:2750000
KS ci ratio: 5.453027e-02	ci left: 1.824482e-03	ci right 1.927116e-03	k: 5157	n:2750000
CDKN2A   2750000 perm   4143 sec   (664 perm/sec)   p_kst 1.875273e-03   p_cons 3.272727e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.336550e-06	k: 0	n:2760000
Cons ci ratio: 1.239610e+00	ci left: 1.491078e-06	ci right 6.190137e-06	k: 9	n:2760000
KS ci ratio: 5.445646e-02	ci left: 1.822875e-03	ci right 1.925276e-03	k: 5171	n:2760000
CDKN2A   2760000 perm   4170 sec   (662 perm/sec)   p_kst 1.873551e-03   p_cons 3.260870e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.331725e-06	k: 0	n:2770000
Cons ci ratio: 1.239610e+00	ci left: 1.485695e-06	ci right 6.167790e-06	k: 9	n:2770000
KS ci ratio: 5.435671e-02	ci left: 1.823060e-03	ci right 1.925278e-03	k: 5190	n:2770000
CDKN2A   2770000 perm   4198 sec   (660 perm/sec)   p_kst 1.873646e-03   p_cons 3.249097e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.326934e-06	k: 0	n:2780000
Cons ci ratio: 1.239610e+00	ci left: 1.480351e-06	ci right 6.145604e-06	k: 9	n:2780000
KS ci ratio: 5.424707e-02	ci left: 1.823954e-03	ci right 1.926009e-03	k: 5211	n:2780000
CDKN2A   2780000 perm   4226 sec   (658 perm/sec)   p_kst 1.874460e-03   p_cons 3.237410e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.322178e-06	k: 0	n:2790000
Cons ci ratio: 1.239610e+00	ci left: 1.475045e-06	ci right 6.123577e-06	k: 9	n:2790000
KS ci ratio: 5.416921e-02	ci left: 1.822720e-03	ci right 1.924555e-03	k: 5226	n:2790000
CDKN2A   2790000 perm   4254 sec   (656 perm/sec)   p_kst 1.873118e-03   p_cons 3.225806e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.317456e-06	k: 0	n:2800000
Cons ci ratio: 1.239610e+00	ci left: 1.469777e-06	ci right 6.101707e-06	k: 9	n:2800000
KS ci ratio: 5.403492e-02	ci left: 1.825371e-03	ci right 1.927093e-03	k: 5252	n:2800000
CDKN2A   2800000 perm   4281 sec   (654 perm/sec)   p_kst 1.875714e-03   p_cons 3.214286e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.312768e-06	k: 0	n:2810000
Cons ci ratio: 1.239610e+00	ci left: 1.464547e-06	ci right 6.079992e-06	k: 9	n:2810000
KS ci ratio: 5.396824e-02	ci left: 1.823438e-03	ci right 1.924924e-03	k: 5265	n:2810000
CDKN2A   2810000 perm   4309 sec   (652 perm/sec)   p_kst 1.873665e-03   p_cons 3.202847e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.308112e-06	k: 0	n:2820000
Cons ci ratio: 1.239610e+00	ci left: 1.459353e-06	ci right 6.058432e-06	k: 9	n:2820000
KS ci ratio: 5.387625e-02	ci left: 1.823269e-03	ci right 1.924567e-03	k: 5283	n:2820000
CDKN2A   2820000 perm   4337 sec   (650 perm/sec)   p_kst 1.873404e-03   p_cons 3.191489e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.303490e-06	k: 0	n:2830000
Cons ci ratio: 1.239610e+00	ci left: 1.454196e-06	ci right 6.037024e-06	k: 9	n:2830000
KS ci ratio: 5.376441e-02	ci left: 1.824496e-03	ci right 1.925644e-03	k: 5305	n:2830000
CDKN2A   2830000 perm   4366 sec   (648 perm/sec)   p_kst 1.874558e-03   p_cons 3.180212e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.298900e-06	k: 0	n:2840000
Cons ci ratio: 1.239610e+00	ci left: 1.449076e-06	ci right 6.015767e-06	k: 9	n:2840000
KS ci ratio: 5.368355e-02	ci left: 1.823630e-03	ci right 1.924573e-03	k: 5321	n:2840000
CDKN2A   2840000 perm   4394 sec   (646 perm/sec)   p_kst 1.873592e-03   p_cons 3.169014e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.294343e-06	k: 0	n:2850000
Cons ci ratio: 1.239610e+00	ci left: 1.443992e-06	ci right 5.994659e-06	k: 9	n:2850000
KS ci ratio: 5.356287e-02	ci left: 1.825539e-03	ci right 1.926354e-03	k: 5345	n:2850000
CDKN2A   2850000 perm   4422 sec   (644 perm/sec)   p_kst 1.875439e-03   p_cons 3.157895e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.289817e-06	k: 0	n:2860000
Cons ci ratio: 1.239610e+00	ci left: 1.438943e-06	ci right 5.973699e-06	k: 9	n:2860000
KS ci ratio: 5.346294e-02	ci left: 1.826056e-03	ci right 1.926706e-03	k: 5365	n:2860000
CDKN2A   2860000 perm   4450 sec   (643 perm/sec)   p_kst 1.875874e-03   p_cons 3.146853e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.285323e-06	k: 0	n:2870000
Cons ci ratio: 1.239610e+00	ci left: 1.433929e-06	ci right 5.952885e-06	k: 9	n:2870000
KS ci ratio: 5.335365e-02	ci left: 1.827256e-03	ci right 1.927760e-03	k: 5387	n:2870000
CDKN2A   2870000 perm   4478 sec   (641 perm/sec)   p_kst 1.877003e-03   p_cons 3.135889e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.280860e-06	k: 0	n:2880000
Cons ci ratio: 1.239610e+00	ci left: 1.428950e-06	ci right 5.932215e-06	k: 9	n:2880000
KS ci ratio: 5.325489e-02	ci left: 1.827763e-03	ci right 1.928103e-03	k: 5407	n:2880000
CDKN2A   2880000 perm   4506 sec   (639 perm/sec)   p_kst 1.877431e-03   p_cons 3.125000e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.276428e-06	k: 0	n:2890000
Cons ci ratio: 1.239610e+00	ci left: 1.424005e-06	ci right 5.911688e-06	k: 9	n:2890000
KS ci ratio: 5.315177e-02	ci left: 1.828609e-03	ci right 1.928795e-03	k: 5428	n:2890000
CDKN2A   2890000 perm   4535 sec   (637 perm/sec)   p_kst 1.878201e-03   p_cons 3.114187e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.272027e-06	k: 0	n:2900000
Cons ci ratio: 1.239610e+00	ci left: 1.419095e-06	ci right 5.891303e-06	k: 9	n:2900000
KS ci ratio: 5.303463e-02	ci left: 1.830469e-03	ci right 1.930530e-03	k: 5452	n:2900000
CDKN2A   2900000 perm   4564 sec   (635 perm/sec)   p_kst 1.880000e-03   p_cons 3.103448e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.267655e-06	k: 0	n:2910000
Cons ci ratio: 1.239610e+00	ci left: 1.414219e-06	ci right 5.871058e-06	k: 9	n:2910000
KS ci ratio: 5.293278e-02	ci left: 1.831300e-03	ci right 1.931207e-03	k: 5473	n:2910000
CDKN2A   2910000 perm   4593 sec   (634 perm/sec)   p_kst 1.880756e-03   p_cons 3.092784e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.263314e-06	k: 0	n:2920000
Cons ci ratio: 1.239611e+00	ci left: 1.409375e-06	ci right 5.850952e-06	k: 9	n:2920000
KS ci ratio: 5.285080e-02	ci left: 1.830773e-03	ci right 1.930493e-03	k: 5490	n:2920000
CDKN2A   2920000 perm   4622 sec   (632 perm/sec)   p_kst 1.880137e-03   p_cons 3.082192e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.259002e-06	k: 0	n:2930000
Cons ci ratio: 1.239611e+00	ci left: 1.404565e-06	ci right 5.830983e-06	k: 9	n:2930000
KS ci ratio: 5.278840e-02	ci left: 1.828903e-03	ci right 1.928399e-03	k: 5503	n:2930000
CDKN2A   2930000 perm   4651 sec   (630 perm/sec)   p_kst 1.878157e-03   p_cons 3.071672e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.254720e-06	k: 0	n:2940000
Cons ci ratio: 1.239611e+00	ci left: 1.399788e-06	ci right 5.811150e-06	k: 9	n:2940000
KS ci ratio: 5.271665e-02	ci left: 1.827717e-03	ci right 1.927010e-03	k: 5518	n:2940000
CDKN2A   2940000 perm   4680 sec   (628 perm/sec)   p_kst 1.876871e-03   p_cons 3.061224e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.250467e-06	k: 0	n:2950000
Cons ci ratio: 1.239611e+00	ci left: 1.395043e-06	ci right 5.791451e-06	k: 9	n:2950000
KS ci ratio: 5.256436e-02	ci left: 1.832226e-03	ci right 1.931467e-03	k: 5550	n:2950000
CDKN2A   2950000 perm   4710 sec   (626 perm/sec)   p_kst 1.881356e-03   p_cons 3.050847e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.246242e-06	k: 0	n:2960000
Cons ci ratio: 1.239611e+00	ci left: 1.390330e-06	ci right 5.771885e-06	k: 9	n:2960000
KS ci ratio: 5.250297e-02	ci left: 1.830370e-03	ci right 1.929392e-03	k: 5563	n:2960000
CDKN2A   2960000 perm   4739 sec   (625 perm/sec)   p_kst 1.879392e-03   p_cons 3.040541e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.242046e-06	k: 0	n:2970000
Cons ci ratio: 1.239611e+00	ci left: 1.385648e-06	ci right 5.752451e-06	k: 9	n:2970000
KS ci ratio: 5.237128e-02	ci left: 1.833512e-03	ci right 1.932447e-03	k: 5591	n:2970000
CDKN2A   2970000 perm   4768 sec   (623 perm/sec)   p_kst 1.882492e-03   p_cons 3.030303e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.237878e-06	k: 0	n:2980000
Cons ci ratio: 1.239611e+00	ci left: 1.380999e-06	ci right 5.733148e-06	k: 9	n:2980000
KS ci ratio: 5.230589e-02	ci left: 1.831995e-03	ci right 1.930721e-03	k: 5605	n:2980000
CDKN2A   2980000 perm   4798 sec   (621 perm/sec)   p_kst 1.880872e-03   p_cons 3.020134e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.233738e-06	k: 0	n:2990000
Cons ci ratio: 1.239611e+00	ci left: 1.376380e-06	ci right 5.713973e-06	k: 9	n:2990000
KS ci ratio: 5.217567e-02	ci left: 1.835111e-03	ci right 1.933751e-03	k: 5633	n:2990000
CDKN2A   2990000 perm   4827 sec   (619 perm/sec)   p_kst 1.883946e-03   p_cons 3.010033e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.229626e-06	k: 0	n:3000000
Cons ci ratio: 1.239611e+00	ci left: 1.371792e-06	ci right 5.694927e-06	k: 9	n:3000000
KS ci ratio: 5.211563e-02	ci left: 1.833270e-03	ci right 1.931695e-03	k: 5646	n:3000000
CDKN2A   3000000 perm   4856 sec   (618 perm/sec)   p_kst 1.882000e-03   p_cons 3.000000e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.225541e-06	k: 0	n:3010000
Cons ci ratio: 1.239611e+00	ci left: 1.367234e-06	ci right 5.676007e-06	k: 9	n:3010000
KS ci ratio: 5.202357e-02	ci left: 1.833738e-03	ci right 1.932008e-03	k: 5666	n:3010000
CDKN2A   3010000 perm   4886 sec   (616 perm/sec)   p_kst 1.882392e-03   p_cons 2.990033e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.221483e-06	k: 0	n:3020000
Cons ci ratio: 1.239611e+00	ci left: 1.362707e-06	ci right 5.657212e-06	k: 9	n:3020000
KS ci ratio: 5.191829e-02	ci left: 1.835183e-03	ci right 1.933326e-03	k: 5689	n:3020000
CDKN2A   3020000 perm   4915 sec   (614 perm/sec)   p_kst 1.883775e-03   p_cons 2.980132e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.217451e-06	k: 0	n:3030000
Cons ci ratio: 1.239611e+00	ci left: 1.358210e-06	ci right 5.638541e-06	k: 9	n:3030000
KS ci ratio: 5.182273e-02	ci left: 1.835967e-03	ci right 1.933966e-03	k: 5710	n:3030000
CDKN2A   3030000 perm   4945 sec   (613 perm/sec)   p_kst 1.884488e-03   p_cons 2.970297e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.213446e-06	k: 0	n:3040000
Cons ci ratio: 1.239611e+00	ci left: 1.353742e-06	ci right 5.619994e-06	k: 9	n:3040000
KS ci ratio: 5.175484e-02	ci left: 1.834798e-03	ci right 1.932602e-03	k: 5725	n:3040000
CDKN2A   3040000 perm   4974 sec   (611 perm/sec)   p_kst 1.883224e-03   p_cons 2.960526e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.209468e-06	k: 0	n:3050000
Cons ci ratio: 1.239611e+00	ci left: 1.349304e-06	ci right 5.601567e-06	k: 9	n:3050000
KS ci ratio: 5.167369e-02	ci left: 1.834607e-03	ci right 1.932244e-03	k: 5743	n:3050000
CDKN2A   3050000 perm   5004 sec   (610 perm/sec)   p_kst 1.882951e-03   p_cons 2.950820e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.205515e-06	k: 0	n:3060000
Cons ci ratio: 1.239611e+00	ci left: 1.344894e-06	ci right 5.583262e-06	k: 9	n:3060000
KS ci ratio: 5.161985e-02	ci left: 1.832483e-03	ci right 1.929902e-03	k: 5755	n:3060000
CDKN2A   3060000 perm   5033 sec   (608 perm/sec)   p_kst 1.880719e-03   p_cons 2.941176e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.201589e-06	k: 0	n:3070000
Cons ci ratio: 1.239611e+00	ci left: 1.340513e-06	ci right 5.565075e-06	k: 9	n:3070000
KS ci ratio: 5.154381e-02	ci left: 1.831980e-03	ci right 1.929224e-03	k: 5772	n:3070000
CDKN2A   3070000 perm   5063 sec   (606 perm/sec)   p_kst 1.880130e-03   p_cons 2.931596e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.197687e-06	k: 0	n:3080000
Cons ci ratio: 1.239611e+00	ci left: 1.336161e-06	ci right 5.547007e-06	k: 9	n:3080000
KS ci ratio: 5.145030e-02	ci left: 1.832762e-03	ci right 1.929866e-03	k: 5793	n:3080000
CDKN2A   3080000 perm   5094 sec   (605 perm/sec)   p_kst 1.880844e-03   p_cons 2.922078e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.193811e-06	k: 0	n:3090000
Cons ci ratio: 1.239611e+00	ci left: 1.331837e-06	ci right 5.529055e-06	k: 9	n:3090000
KS ci ratio: 5.136172e-02	ci left: 1.833220e-03	ci right 1.930176e-03	k: 5813	n:3090000
CDKN2A   3090000 perm   5124 sec   (603 perm/sec)   p_kst 1.881230e-03   p_cons 2.912621e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.189960e-06	k: 0	n:3100000
Cons ci ratio: 1.239611e+00	ci left: 1.327541e-06	ci right 5.511220e-06	k: 9	n:3100000
KS ci ratio: 5.130003e-02	ci left: 1.831765e-03	ci right 1.928524e-03	k: 5827	n:3100000
CDKN2A   3100000 perm   5154 sec   (601 perm/sec)   p_kst 1.879677e-03   p_cons 2.903226e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.186134e-06	k: 0	n:3110000
Cons ci ratio: 1.239611e+00	ci left: 1.323272e-06	ci right 5.493499e-06	k: 9	n:3110000
KS ci ratio: 5.120783e-02	ci left: 1.832541e-03	ci right 1.929162e-03	k: 5848	n:3110000
CDKN2A   3110000 perm   5185 sec   (600 perm/sec)   p_kst 1.880386e-03   p_cons 2.893891e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.182332e-06	k: 0	n:3120000
Cons ci ratio: 1.239611e+00	ci left: 1.319031e-06	ci right 5.475891e-06	k: 9	n:3120000
KS ci ratio: 5.112050e-02	ci left: 1.832996e-03	ci right 1.929471e-03	k: 5868	n:3120000
CDKN2A   3120000 perm   5215 sec   (598 perm/sec)   p_kst 1.880769e-03   p_cons 2.884615e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.178555e-06	k: 0	n:3130000
Cons ci ratio: 1.239611e+00	ci left: 1.314817e-06	ci right 5.458397e-06	k: 9	n:3130000
KS ci ratio: 5.104664e-02	ci left: 1.832501e-03	ci right 1.928807e-03	k: 5885	n:3130000
CDKN2A   3130000 perm   5246 sec   (597 perm/sec)   p_kst 1.880192e-03   p_cons 2.875399e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.174802e-06	k: 0	n:3140000
Cons ci ratio: 1.239611e+00	ci left: 1.310629e-06	ci right 5.441013e-06	k: 9	n:3140000
KS ci ratio: 5.095148e-02	ci left: 1.833582e-03	ci right 1.929760e-03	k: 5907	n:3140000
CDKN2A   3140000 perm   5276 sec   (595 perm/sec)   p_kst 1.881210e-03   p_cons 2.866242e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.171072e-06	k: 0	n:3150000
Cons ci ratio: 1.239611e+00	ci left: 1.306468e-06	ci right 5.423740e-06	k: 9	n:3150000
KS ci ratio: 5.088265e-02	ci left: 1.832776e-03	ci right 1.928778e-03	k: 5923	n:3150000
CDKN2A   3150000 perm   5307 sec   (594 perm/sec)   p_kst 1.880317e-03   p_cons 2.857143e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.167366e-06	k: 0	n:3160000
Cons ci ratio: 1.239611e+00	ci left: 1.302334e-06	ci right 5.406576e-06	k: 9	n:3160000
KS ci ratio: 5.083983e-02	ci left: 1.830101e-03	ci right 1.925879e-03	k: 5933	n:3160000
CDKN2A   3160000 perm   5338 sec   (592 perm/sec)   p_kst 1.877532e-03   p_cons 2.848101e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.163684e-06	k: 0	n:3170000
Cons ci ratio: 1.239611e+00	ci left: 1.298226e-06	ci right 5.389521e-06	k: 9	n:3170000
KS ci ratio: 5.074582e-02	ci left: 1.831179e-03	ci right 1.926832e-03	k: 5955	n:3170000
CDKN2A   3170000 perm   5369 sec   (590 perm/sec)   p_kst 1.878549e-03   p_cons 2.839117e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.160024e-06	k: 0	n:3180000
Cons ci ratio: 1.239611e+00	ci left: 1.294143e-06	ci right 5.372573e-06	k: 9	n:3180000
KS ci ratio: 5.063960e-02	ci left: 1.833183e-03	ci right 1.928734e-03	k: 5980	n:3180000
CDKN2A   3180000 perm   5400 sec   (589 perm/sec)   p_kst 1.880503e-03   p_cons 2.830189e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.156388e-06	k: 0	n:3190000
Cons ci ratio: 1.239611e+00	ci left: 1.290086e-06	ci right 5.355731e-06	k: 9	n:3190000
KS ci ratio: 5.056358e-02	ci left: 1.833007e-03	ci right 1.928402e-03	k: 5998	n:3190000
CDKN2A   3190000 perm   5431 sec   (587 perm/sec)   p_kst 1.880251e-03   p_cons 2.821317e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.152774e-06	k: 0	n:3200000
Cons ci ratio: 1.239611e+00	ci left: 1.286055e-06	ci right 5.338994e-06	k: 9	n:3200000
KS ci ratio: 5.045850e-02	ci left: 1.834993e-03	ci right 1.930287e-03	k: 6023	n:3200000
CDKN2A   3200000 perm   5462 sec   (586 perm/sec)   p_kst 1.882187e-03   p_cons 2.812500e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.149183e-06	k: 0	n:3210000
Cons ci ratio: 1.239611e+00	ci left: 1.282048e-06	ci right 5.322362e-06	k: 9	n:3210000
KS ci ratio: 5.039165e-02	ci left: 1.834198e-03	ci right 1.929321e-03	k: 6039	n:3210000
CDKN2A   3210000 perm   5493 sec   (584 perm/sec)   p_kst 1.881308e-03   p_cons 2.803738e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.145614e-06	k: 0	n:3220000
Cons ci ratio: 1.239611e+00	ci left: 1.278067e-06	ci right 5.305833e-06	k: 9	n:3220000
KS ci ratio: 5.032922e-02	ci left: 1.833102e-03	ci right 1.928046e-03	k: 6054	n:3220000
CDKN2A   3220000 perm   5524 sec   (583 perm/sec)   p_kst 1.880124e-03   p_cons 2.795031e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.142067e-06	k: 0	n:3230000
Cons ci ratio: 1.239611e+00	ci left: 1.274110e-06	ci right 5.289406e-06	k: 9	n:3230000
KS ci ratio: 5.026703e-02	ci left: 1.832012e-03	ci right 1.926779e-03	k: 6069	n:3230000
CDKN2A   3230000 perm   5556 sec   (581 perm/sec)   p_kst 1.878947e-03   p_cons 2.786378e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.138542e-06	k: 0	n:3240000
Cons ci ratio: 1.239611e+00	ci left: 1.270178e-06	ci right 5.273081e-06	k: 9	n:3240000
KS ci ratio: 5.023402e-02	ci left: 1.828796e-03	ci right 1.923333e-03	k: 6077	n:3240000
CDKN2A   3240000 perm   5587 sec   (580 perm/sec)   p_kst 1.875617e-03   p_cons 2.777778e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.135039e-06	k: 0	n:3250000
Cons ci ratio: 1.239611e+00	ci left: 1.266269e-06	ci right 5.256856e-06	k: 9	n:3250000
KS ci ratio: 5.017217e-02	ci left: 1.827726e-03	ci right 1.922088e-03	k: 6092	n:3250000
CDKN2A   3250000 perm   5619 sec   (578 perm/sec)   p_kst 1.874462e-03   p_cons 2.769231e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.131557e-06	k: 0	n:3260000
Cons ci ratio: 1.239611e+00	ci left: 1.262385e-06	ci right 5.240731e-06	k: 9	n:3260000
KS ci ratio: 5.010234e-02	ci left: 1.827269e-03	ci right 1.921472e-03	k: 6109	n:3260000
CDKN2A   3260000 perm   5650 sec   (577 perm/sec)   p_kst 1.873926e-03   p_cons 2.760736e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.128097e-06	k: 0	n:3270000
Cons ci ratio: 1.239611e+00	ci left: 1.258525e-06	ci right 5.224704e-06	k: 9	n:3270000
KS ci ratio: 5.001236e-02	ci left: 1.828325e-03	ci right 1.922408e-03	k: 6131	n:3270000
CDKN2A   3270000 perm   5682 sec   (576 perm/sec)   p_kst 1.874924e-03   p_cons 2.752294e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.124658e-06	k: 0	n:3280000
Cons ci ratio: 1.239611e+00	ci left: 1.254688e-06	ci right 5.208775e-06	k: 9	n:3280000
KS ci ratio: 4.993506e-02	ci left: 1.828471e-03	ci right 1.922412e-03	k: 6150	n:3280000
CDKN2A   3280000 perm   5714 sec   (574 perm/sec)   p_kst 1.875000e-03   p_cons 2.743902e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.121239e-06	k: 0	n:3290000
Cons ci ratio: 1.239611e+00	ci left: 1.250874e-06	ci right 5.192943e-06	k: 9	n:3290000
KS ci ratio: 4.985406e-02	ci left: 1.828916e-03	ci right 1.922724e-03	k: 6170	n:3290000
CDKN2A   3290000 perm   5746 sec   (573 perm/sec)   p_kst 1.875380e-03   p_cons 2.735562e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.117842e-06	k: 0	n:3300000
Cons ci ratio: 1.239611e+00	ci left: 1.247083e-06	ci right 5.177207e-06	k: 9	n:3300000
KS ci ratio: 4.976138e-02	ci left: 1.830257e-03	ci right 1.923954e-03	k: 6193	n:3300000
CDKN2A   3300000 perm   5778 sec   (571 perm/sec)   p_kst 1.876667e-03   p_cons 2.727273e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.114464e-06	k: 0	n:3310000
Cons ci ratio: 1.239611e+00	ci left: 1.243316e-06	ci right 5.161566e-06	k: 9	n:3310000
KS ci ratio: 4.966522e-02	ci left: 1.831888e-03	ci right 1.925482e-03	k: 6217	n:3310000
CDKN2A   3310000 perm   5810 sec   (570 perm/sec)   p_kst 1.878248e-03   p_cons 2.719033e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.111108e-06	k: 0	n:3320000
Cons ci ratio: 1.239611e+00	ci left: 1.239571e-06	ci right 5.146019e-06	k: 9	n:3320000
KS ci ratio: 4.958155e-02	ci left: 1.832617e-03	ci right 1.926086e-03	k: 6238	n:3320000
CDKN2A   3320000 perm   5842 sec   (568 perm/sec)   p_kst 1.878916e-03   p_cons 2.710843e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.107771e-06	k: 0	n:3330000
Cons ci ratio: 1.239611e+00	ci left: 1.235848e-06	ci right 5.130565e-06	k: 9	n:3330000
KS ci ratio: 4.951018e-02	ci left: 1.832452e-03	ci right 1.925775e-03	k: 6256	n:3330000
CDKN2A   3330000 perm   5874 sec   (567 perm/sec)   p_kst 1.878679e-03   p_cons 2.702703e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.104454e-06	k: 0	n:3340000
Cons ci ratio: 1.239611e+00	ci left: 1.232148e-06	ci right 5.115204e-06	k: 9	n:3340000
KS ci ratio: 4.943123e-02	ci left: 1.832880e-03	ci right 1.926071e-03	k: 6276	n:3340000
CDKN2A   3340000 perm   5907 sec   (565 perm/sec)   p_kst 1.879042e-03   p_cons 2.694611e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.101157e-06	k: 0	n:3350000
Cons ci ratio: 1.239611e+00	ci left: 1.228470e-06	ci right 5.099935e-06	k: 9	n:3350000
KS ci ratio: 4.935266e-02	ci left: 1.833305e-03	ci right 1.926365e-03	k: 6296	n:3350000
CDKN2A   3350000 perm   5939 sec   (564 perm/sec)   p_kst 1.879403e-03   p_cons 2.686567e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.097880e-06	k: 0	n:3360000
Cons ci ratio: 1.239611e+00	ci left: 1.224814e-06	ci right 5.084757e-06	k: 9	n:3360000
KS ci ratio: 4.930184e-02	ci left: 1.831670e-03	ci right 1.924549e-03	k: 6309	n:3360000
CDKN2A   3360000 perm   5972 sec   (563 perm/sec)   p_kst 1.877679e-03   p_cons 2.678571e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.094622e-06	k: 0	n:3370000
Cons ci ratio: 1.239611e+00	ci left: 1.221180e-06	ci right 5.069669e-06	k: 9	n:3370000
KS ci ratio: 4.922778e-02	ci left: 1.831803e-03	ci right 1.924545e-03	k: 6328	n:3370000
CDKN2A   3370000 perm   6005 sec   (561 perm/sec)   p_kst 1.877745e-03   p_cons 2.670623e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.091384e-06	k: 0	n:3380000
Cons ci ratio: 1.239611e+00	ci left: 1.217567e-06	ci right 5.054670e-06	k: 9	n:3380000
KS ci ratio: 4.916958e-02	ci left: 1.830767e-03	ci right 1.923344e-03	k: 6343	n:3380000
CDKN2A   3380000 perm   6038 sec   (560 perm/sec)   p_kst 1.876627e-03   p_cons 2.662722e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.088164e-06	k: 0	n:3390000
Cons ci ratio: 1.239611e+00	ci left: 1.213975e-06	ci right 5.039759e-06	k: 9	n:3390000
KS ci ratio: 4.909611e-02	ci left: 1.830903e-03	ci right 1.923344e-03	k: 6362	n:3390000
CDKN2A   3390000 perm   6070 sec   (558 perm/sec)   p_kst 1.876696e-03   p_cons 2.654867e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.084964e-06	k: 0	n:3400000
Cons ci ratio: 1.239611e+00	ci left: 1.210405e-06	ci right 5.024936e-06	k: 9	n:3400000
KS ci ratio: 4.903067e-02	ci left: 1.830456e-03	ci right 1.922748e-03	k: 6379	n:3400000
CDKN2A   3400000 perm   6103 sec   (557 perm/sec)   p_kst 1.876176e-03   p_cons 2.647059e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.081782e-06	k: 0	n:3410000
Cons ci ratio: 1.239611e+00	ci left: 1.206855e-06	ci right 5.010200e-06	k: 9	n:3410000
KS ci ratio: 4.896165e-02	ci left: 1.830302e-03	ci right 1.922453e-03	k: 6397	n:3410000
CDKN2A   3410000 perm   6136 sec   (556 perm/sec)   p_kst 1.875953e-03   p_cons 2.639296e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.078619e-06	k: 0	n:3420000
Cons ci ratio: 1.239611e+00	ci left: 1.203326e-06	ci right 4.995551e-06	k: 9	n:3420000
KS ci ratio: 4.884338e-02	ci left: 1.833904e-03	ci right 1.926007e-03	k: 6428	n:3420000
CDKN2A   3420000 perm   6169 sec   (554 perm/sec)   p_kst 1.879532e-03   p_cons 2.631579e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.075474e-06	k: 0	n:3430000
Cons ci ratio: 1.239611e+00	ci left: 1.199818e-06	ci right 4.980986e-06	k: 9	n:3430000
KS ci ratio: 4.876379e-02	ci left: 1.834605e-03	ci right 1.926589e-03	k: 6449	n:3430000
CDKN2A   3430000 perm   6202 sec   (553 perm/sec)   p_kst 1.880175e-03   p_cons 2.623907e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.072348e-06	k: 0	n:3440000
Cons ci ratio: 1.239611e+00	ci left: 1.196330e-06	ci right 4.966507e-06	k: 9	n:3440000
KS ci ratio: 4.866575e-02	ci left: 1.836738e-03	ci right 1.928638e-03	k: 6475	n:3440000
CDKN2A   3440000 perm   6236 sec   (552 perm/sec)   p_kst 1.882267e-03   p_cons 2.616279e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.069240e-06	k: 0	n:3450000
Cons ci ratio: 1.239611e+00	ci left: 1.192862e-06	ci right 4.952111e-06	k: 9	n:3450000
KS ci ratio: 4.856082e-02	ci left: 1.839432e-03	ci right 1.931263e-03	k: 6503	n:3450000
CDKN2A   3450000 perm   6269 sec   (550 perm/sec)   p_kst 1.884928e-03   p_cons 2.608696e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.066150e-06	k: 0	n:3460000
Cons ci ratio: 1.181922e+00	ci left: 1.385951e-06	ci right 5.315125e-06	k: 10	n:3460000
KS ci ratio: 4.849377e-02	ci left: 1.839255e-03	ci right 1.930946e-03	k: 6521	n:3460000
CDKN2A   3460000 perm   6302 sec   (549 perm/sec)   p_kst 1.884682e-03   p_cons 2.890173e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.063077e-06	k: 0	n:3470000
Cons ci ratio: 1.181922e+00	ci left: 1.381957e-06	ci right 5.299808e-06	k: 10	n:3470000
KS ci ratio: 4.840105e-02	ci left: 1.841071e-03	ci right 1.932674e-03	k: 6546	n:3470000
CDKN2A   3470000 perm   6336 sec   (548 perm/sec)   p_kst 1.886455e-03   p_cons 2.881844e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.060022e-06	k: 0	n:3480000
Cons ci ratio: 1.181922e+00	ci left: 1.377986e-06	ci right 5.284579e-06	k: 10	n:3480000
KS ci ratio: 4.834941e-02	ci left: 1.839755e-03	ci right 1.931192e-03	k: 6560	n:3480000
CDKN2A   3480000 perm   6370 sec   (546 perm/sec)   p_kst 1.885057e-03   p_cons 2.873563e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.056985e-06	k: 0	n:3490000
Cons ci ratio: 1.181922e+00	ci left: 1.374038e-06	ci right 5.269437e-06	k: 10	n:3490000
KS ci ratio: 4.826119e-02	ci left: 1.841278e-03	ci right 1.932618e-03	k: 6584	n:3490000
CDKN2A   3490000 perm   6403 sec   (545 perm/sec)   p_kst 1.886533e-03   p_cons 2.865330e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.053965e-06	k: 0	n:3500000
Cons ci ratio: 1.181922e+00	ci left: 1.370112e-06	ci right 5.254381e-06	k: 10	n:3500000
KS ci ratio: 4.817345e-02	ci left: 1.842791e-03	ci right 1.934036e-03	k: 6608	n:3500000
CDKN2A   3500000 perm   6437 sec   (544 perm/sec)   p_kst 1.888000e-03   p_cons 2.857143e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.050962e-06	k: 0	n:3510000
Cons ci ratio: 1.181922e+00	ci left: 1.366208e-06	ci right 5.239411e-06	k: 10	n:3510000
KS ci ratio: 4.813710e-02	ci left: 1.840356e-03	ci right 1.931409e-03	k: 6618	n:3510000
CDKN2A   3510000 perm   6471 sec   (542 perm/sec)   p_kst 1.885470e-03   p_cons 2.849003e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.047977e-06	k: 0	n:3520000
Cons ci ratio: 1.181922e+00	ci left: 1.362327e-06	ci right 5.224527e-06	k: 10	n:3520000
KS ci ratio: 4.806816e-02	ci left: 1.840460e-03	ci right 1.931385e-03	k: 6637	n:3520000
CDKN2A   3520000 perm   6505 sec   (541 perm/sec)   p_kst 1.885511e-03   p_cons 2.840909e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.045008e-06	k: 0	n:3530000
Cons ci ratio: 1.181922e+00	ci left: 1.358468e-06	ci right 5.209726e-06	k: 10	n:3530000
KS ci ratio: 4.799951e-02	ci left: 1.840564e-03	ci right 1.931361e-03	k: 6656	n:3530000
CDKN2A   3530000 perm   6539 sec   (540 perm/sec)   p_kst 1.885552e-03   p_cons 2.832861e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.042056e-06	k: 0	n:3540000
Cons ci ratio: 1.181922e+00	ci left: 1.354630e-06	ci right 5.195010e-06	k: 10	n:3540000
KS ci ratio: 4.792756e-02	ci left: 1.840947e-03	ci right 1.931622e-03	k: 6676	n:3540000
CDKN2A   3540000 perm   6573 sec   (539 perm/sec)   p_kst 1.885876e-03   p_cons 2.824859e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.039120e-06	k: 0	n:3550000
Cons ci ratio: 1.181922e+00	ci left: 1.350815e-06	ci right 5.180376e-06	k: 10	n:3550000
KS ci ratio: 4.787026e-02	ci left: 1.840214e-03	ci right 1.930742e-03	k: 6692	n:3550000
CDKN2A   3550000 perm   6608 sec   (537 perm/sec)   p_kst 1.885070e-03   p_cons 2.816901e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.036202e-06	k: 0	n:3560000
Cons ci ratio: 1.181922e+00	ci left: 1.347020e-06	ci right 5.165824e-06	k: 10	n:3560000
KS ci ratio: 4.778819e-02	ci left: 1.841429e-03	ci right 1.931857e-03	k: 6715	n:3560000
CDKN2A   3560000 perm   6642 sec   (536 perm/sec)   p_kst 1.886236e-03   p_cons 2.808989e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.033299e-06	k: 0	n:3570000
Cons ci ratio: 1.181922e+00	ci left: 1.343247e-06	ci right 5.151354e-06	k: 10	n:3570000
KS ci ratio: 4.772429e-02	ci left: 1.841252e-03	ci right 1.931547e-03	k: 6733	n:3570000
CDKN2A   3570000 perm   6677 sec   (535 perm/sec)   p_kst 1.885994e-03   p_cons 2.801120e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.030413e-06	k: 0	n:3580000
Cons ci ratio: 1.181922e+00	ci left: 1.339495e-06	ci right 5.136965e-06	k: 10	n:3580000
KS ci ratio: 4.765710e-02	ci left: 1.841353e-03	ci right 1.931523e-03	k: 6752	n:3580000
CDKN2A   3580000 perm   6711 sec   (533 perm/sec)   p_kst 1.886034e-03   p_cons 2.793296e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.027542e-06	k: 0	n:3590000
Cons ci ratio: 1.181922e+00	ci left: 1.335764e-06	ci right 5.122656e-06	k: 10	n:3590000
KS ci ratio: 4.762192e-02	ci left: 1.838976e-03	ci right 1.928961e-03	k: 6762	n:3590000
CDKN2A   3590000 perm   6746 sec   (532 perm/sec)   p_kst 1.883565e-03   p_cons 2.785515e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.024688e-06	k: 0	n:3600000
Cons ci ratio: 1.181923e+00	ci left: 1.332053e-06	ci right 5.108426e-06	k: 10	n:3600000
KS ci ratio: 4.755867e-02	ci left: 1.838809e-03	ci right 1.928662e-03	k: 6780	n:3600000
CDKN2A   3600000 perm   6780 sec   (531 perm/sec)   p_kst 1.883333e-03   p_cons 2.777778e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.021850e-06	k: 0	n:3610000
Cons ci ratio: 1.181923e+00	ci left: 1.328363e-06	ci right 5.094276e-06	k: 10	n:3610000
KS ci ratio: 4.749568e-02	ci left: 1.838642e-03	ci right 1.928365e-03	k: 6798	n:3610000
CDKN2A   3610000 perm   6816 sec   (530 perm/sec)   p_kst 1.883102e-03   p_cons 2.770083e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.019027e-06	k: 0	n:3620000
Cons ci ratio: 1.181923e+00	ci left: 1.324694e-06	ci right 5.080203e-06	k: 10	n:3620000
KS ci ratio: 4.741900e-02	ci left: 1.839568e-03	ci right 1.929188e-03	k: 6820	n:3620000
CDKN2A   3620000 perm   6851 sec   (528 perm/sec)   p_kst 1.883978e-03   p_cons 2.762431e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.016220e-06	k: 0	n:3630000
Cons ci ratio: 1.181923e+00	ci left: 1.321044e-06	ci right 5.066208e-06	k: 10	n:3630000
KS ci ratio: 4.731154e-02	ci left: 1.842939e-03	ci right 1.932514e-03	k: 6851	n:3630000
CDKN2A   3630000 perm   6886 sec   (527 perm/sec)   p_kst 1.887328e-03   p_cons 2.754821e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.013428e-06	k: 0	n:3640000
Cons ci ratio: 1.181923e+00	ci left: 1.317415e-06	ci right 5.052290e-06	k: 10	n:3640000
KS ci ratio: 4.725641e-02	ci left: 1.842220e-03	ci right 1.931653e-03	k: 6867	n:3640000
CDKN2A   3640000 perm   6921 sec   (526 perm/sec)   p_kst 1.886538e-03   p_cons 2.747253e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.010651e-06	k: 0	n:3650000
Cons ci ratio: 1.181923e+00	ci left: 1.313806e-06	ci right 5.038448e-06	k: 10	n:3650000
KS ci ratio: 4.718432e-02	ci left: 1.842858e-03	ci right 1.932182e-03	k: 6888	n:3650000
CDKN2A   3650000 perm   6957 sec   (525 perm/sec)   p_kst 1.887123e-03   p_cons 2.739726e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.007890e-06	k: 0	n:3660000
Cons ci ratio: 1.181923e+00	ci left: 1.310216e-06	ci right 5.024682e-06	k: 10	n:3660000
KS ci ratio: 4.713648e-02	ci left: 1.841603e-03	ci right 1.930773e-03	k: 6902	n:3660000
CDKN2A   3660000 perm   6993 sec   (523 perm/sec)   p_kst 1.885792e-03   p_cons 2.732240e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.005144e-06	k: 0	n:3670000
Cons ci ratio: 1.181923e+00	ci left: 1.306646e-06	ci right 5.010990e-06	k: 10	n:3670000
KS ci ratio: 4.708878e-02	ci left: 1.840355e-03	ci right 1.929371e-03	k: 6916	n:3670000
CDKN2A   3670000 perm   7028 sec   (522 perm/sec)   p_kst 1.884469e-03   p_cons 2.724796e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.002412e-06	k: 0	n:3680000
Cons ci ratio: 1.181923e+00	ci left: 1.303095e-06	ci right 4.997374e-06	k: 10	n:3680000
KS ci ratio: 4.703104e-02	ci left: 1.839919e-03	ci right 1.928802e-03	k: 6933	n:3680000
CDKN2A   3680000 perm   7064 sec   (521 perm/sec)   p_kst 1.883967e-03   p_cons 2.717391e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.996958e-07	k: 0	n:3690000
Cons ci ratio: 1.181923e+00	ci left: 1.299564e-06	ci right 4.983831e-06	k: 10	n:3690000
KS ci ratio: 4.695320e-02	ci left: 1.841093e-03	ci right 1.929882e-03	k: 6956	n:3690000
CDKN2A   3690000 perm   7100 sec   (520 perm/sec)   p_kst 1.885095e-03   p_cons 2.710027e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.969940e-07	k: 0	n:3700000
Cons ci ratio: 1.181923e+00	ci left: 1.296052e-06	ci right 4.970361e-06	k: 10	n:3700000
KS ci ratio: 4.691618e-02	ci left: 1.839055e-03	ci right 1.927674e-03	k: 6967	n:3700000
CDKN2A   3700000 perm   7136 sec   (518 perm/sec)   p_kst 1.882973e-03   p_cons 2.702703e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.943066e-07	k: 0	n:3710000
Cons ci ratio: 1.181923e+00	ci left: 1.292558e-06	ci right 4.956964e-06	k: 10	n:3710000
KS ci ratio: 4.687587e-02	ci left: 1.837294e-03	ci right 1.925750e-03	k: 6979	n:3710000
CDKN2A   3710000 perm   7173 sec   (517 perm/sec)   p_kst 1.881132e-03   p_cons 2.695418e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.916338e-07	k: 0	n:3720000
Cons ci ratio: 1.181923e+00	ci left: 1.289084e-06	ci right 4.943639e-06	k: 10	n:3720000
KS ci ratio: 4.682561e-02	ci left: 1.836340e-03	ci right 1.924653e-03	k: 6994	n:3720000
CDKN2A   3720000 perm   7209 sec   (516 perm/sec)   p_kst 1.880108e-03   p_cons 2.688172e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.889752e-07	k: 0	n:3730000
Cons ci ratio: 1.181923e+00	ci left: 1.285628e-06	ci right 4.930385e-06	k: 10	n:3730000
KS ci ratio: 4.676882e-02	ci left: 1.835921e-03	ci right 1.924104e-03	k: 7011	n:3730000
CDKN2A   3730000 perm   7245 sec   (515 perm/sec)   p_kst 1.879625e-03   p_cons 2.680965e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.863309e-07	k: 0	n:3740000
Cons ci ratio: 1.181923e+00	ci left: 1.282190e-06	ci right 4.917202e-06	k: 10	n:3740000
KS ci ratio: 4.673890e-02	ci left: 1.833391e-03	ci right 1.921394e-03	k: 7020	n:3740000
CDKN2A   3740000 perm   7281 sec   (514 perm/sec)   p_kst 1.877005e-03   p_cons 2.673797e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.837007e-07	k: 0	n:3750000
Cons ci ratio: 1.181923e+00	ci left: 1.278771e-06	ci right 4.904089e-06	k: 10	n:3750000
KS ci ratio: 4.665919e-02	ci left: 1.834827e-03	ci right 1.922745e-03	k: 7044	n:3750000
CDKN2A   3750000 perm   7318 sec   (512 perm/sec)   p_kst 1.878400e-03   p_cons 2.666667e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.810845e-07	k: 0	n:3760000
Cons ci ratio: 1.181923e+00	ci left: 1.275370e-06	ci right 4.891047e-06	k: 10	n:3760000
KS ci ratio: 4.660301e-02	ci left: 1.834416e-03	ci right 1.922205e-03	k: 7061	n:3760000
CDKN2A   3760000 perm   7355 sec   (511 perm/sec)   p_kst 1.877926e-03   p_cons 2.659574e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.784821e-07	k: 0	n:3770000
Cons ci ratio: 1.181923e+00	ci left: 1.271987e-06	ci right 4.878073e-06	k: 10	n:3770000
KS ci ratio: 4.657010e-02	ci left: 1.832172e-03	ci right 1.919790e-03	k: 7071	n:3770000
CDKN2A   3770000 perm   7392 sec   (510 perm/sec)   p_kst 1.875597e-03   p_cons 2.652520e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.758936e-07	k: 0	n:3780000
Cons ci ratio: 1.181923e+00	ci left: 1.268622e-06	ci right 4.865168e-06	k: 10	n:3780000
KS ci ratio: 4.649453e-02	ci left: 1.833338e-03	ci right 1.920867e-03	k: 7094	n:3780000
CDKN2A   3780000 perm   7429 sec   (509 perm/sec)   p_kst 1.876720e-03   p_cons 2.645503e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.733186e-07	k: 0	n:3790000
Cons ci ratio: 1.181923e+00	ci left: 1.265275e-06	ci right 4.852331e-06	k: 10	n:3790000
KS ci ratio: 4.643567e-02	ci left: 1.833195e-03	ci right 1.920603e-03	k: 7112	n:3790000
CDKN2A   3790000 perm   7466 sec   (508 perm/sec)   p_kst 1.876517e-03   p_cons 2.638522e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.707573e-07	k: 0	n:3800000
Cons ci ratio: 1.181923e+00	ci left: 1.261945e-06	ci right 4.839562e-06	k: 10	n:3800000
KS ci ratio: 4.639659e-02	ci left: 1.831492e-03	ci right 1.918743e-03	k: 7124	n:3800000
CDKN2A   3800000 perm   7503 sec   (506 perm/sec)   p_kst 1.874737e-03   p_cons 2.631579e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.682094e-07	k: 0	n:3810000
Cons ci ratio: 1.181923e+00	ci left: 1.258633e-06	ci right 4.826860e-06	k: 10	n:3810000
KS ci ratio: 4.632510e-02	ci left: 1.832393e-03	ci right 1.919548e-03	k: 7146	n:3810000
CDKN2A   3810000 perm   7541 sec   (505 perm/sec)   p_kst 1.875591e-03   p_cons 2.624672e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.656748e-07	k: 0	n:3820000
Cons ci ratio: 1.181923e+00	ci left: 1.255338e-06	ci right 4.814224e-06	k: 10	n:3820000
KS ci ratio: 4.627335e-02	ci left: 1.831736e-03	ci right 1.918760e-03	k: 7162	n:3820000
CDKN2A   3820000 perm   7578 sec   (504 perm/sec)   p_kst 1.874869e-03   p_cons 2.617801e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.631534e-07	k: 0	n:3830000
Cons ci ratio: 1.181923e+00	ci left: 1.252060e-06	ci right 4.801654e-06	k: 10	n:3830000
KS ci ratio: 4.619600e-02	ci left: 1.833147e-03	ci right 1.920089e-03	k: 7186	n:3830000
CDKN2A   3830000 perm   7615 sec   (503 perm/sec)   p_kst 1.876240e-03   p_cons 2.610966e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.606452e-07	k: 0	n:3840000
Cons ci ratio: 1.181923e+00	ci left: 1.248800e-06	ci right 4.789150e-06	k: 10	n:3840000
KS ci ratio: 4.613826e-02	ci left: 1.833007e-03	ci right 1.919831e-03	k: 7204	n:3840000
CDKN2A   3840000 perm   7652 sec   (502 perm/sec)   p_kst 1.876042e-03   p_cons 2.604167e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.581500e-07	k: 0	n:3850000
Cons ci ratio: 1.181923e+00	ci left: 1.245556e-06	ci right 4.776711e-06	k: 10	n:3850000
KS ci ratio: 4.609993e-02	ci left: 1.831326e-03	ci right 1.917997e-03	k: 7216	n:3850000
CDKN2A   3850000 perm   7689 sec   (501 perm/sec)   p_kst 1.874286e-03   p_cons 2.597403e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.556678e-07	k: 0	n:3860000
Cons ci ratio: 1.181923e+00	ci left: 1.242329e-06	ci right 4.764336e-06	k: 10	n:3860000
KS ci ratio: 4.605211e-02	ci left: 1.830423e-03	ci right 1.916959e-03	k: 7231	n:3860000
CDKN2A   3860000 perm   7726 sec   (500 perm/sec)   p_kst 1.873316e-03   p_cons 2.590674e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.531984e-07	k: 0	n:3870000
Cons ci ratio: 1.181923e+00	ci left: 1.239119e-06	ci right 4.752025e-06	k: 10	n:3870000
KS ci ratio: 4.598538e-02	ci left: 1.831057e-03	ci right 1.917494e-03	k: 7252	n:3870000
CDKN2A   3870000 perm   7763 sec   (499 perm/sec)   p_kst 1.873902e-03   p_cons 2.583979e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.507417e-07	k: 0	n:3880000
Cons ci ratio: 1.181923e+00	ci left: 1.235926e-06	ci right 4.739777e-06	k: 10	n:3880000
KS ci ratio: 4.594743e-02	ci left: 1.829395e-03	ci right 1.915681e-03	k: 7264	n:3880000
CDKN2A   3880000 perm   7800 sec   (497 perm/sec)   p_kst 1.872165e-03   p_cons 2.577320e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.482976e-07	k: 0	n:3890000
Cons ci ratio: 1.181923e+00	ci left: 1.232748e-06	ci right 4.727593e-06	k: 10	n:3890000
KS ci ratio: 4.587485e-02	ci left: 1.830537e-03	ci right 1.916736e-03	k: 7287	n:3890000
CDKN2A   3890000 perm   7837 sec   (496 perm/sec)   p_kst 1.873265e-03   p_cons 2.570694e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.458661e-07	k: 0	n:3900000
Cons ci ratio: 1.181923e+00	ci left: 1.229588e-06	ci right 4.715471e-06	k: 10	n:3900000
KS ci ratio: 4.582459e-02	ci left: 1.829899e-03	ci right 1.915971e-03	k: 7303	n:3900000
CDKN2A   3900000 perm   7875 sec   (495 perm/sec)   p_kst 1.872564e-03   p_cons 2.564103e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.434470e-07	k: 0	n:3910000
Cons ci ratio: 1.181923e+00	ci left: 1.226443e-06	ci right 4.703411e-06	k: 10	n:3910000
KS ci ratio: 4.575884e-02	ci left: 1.830529e-03	ci right 1.916503e-03	k: 7324	n:3910000
CDKN2A   3910000 perm   7913 sec   (494 perm/sec)   p_kst 1.873146e-03   p_cons 2.557545e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.410402e-07	k: 0	n:3920000
Cons ci ratio: 1.131605e+00	ci left: 1.400807e-06	ci right 5.020923e-06	k: 11	n:3920000
KS ci ratio: 4.571832e-02	ci left: 1.829137e-03	ci right 1.914969e-03	k: 7337	n:3920000
CDKN2A   3920000 perm   7951 sec   (493 perm/sec)   p_kst 1.871684e-03   p_cons 2.806122e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.386457e-07	k: 0	n:3930000
Cons ci ratio: 1.131605e+00	ci left: 1.397243e-06	ci right 5.008147e-06	k: 11	n:3930000
KS ci ratio: 4.564682e-02	ci left: 1.830268e-03	ci right 1.916015e-03	k: 7360	n:3930000
CDKN2A   3930000 perm   7989 sec   (492 perm/sec)   p_kst 1.872774e-03   p_cons 2.798982e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.362634e-07	k: 0	n:3940000
Cons ci ratio: 1.131605e+00	ci left: 1.393696e-06	ci right 4.995436e-06	k: 11	n:3940000
KS ci ratio: 4.557874e-02	ci left: 1.831143e-03	ci right 1.916800e-03	k: 7382	n:3940000
CDKN2A   3940000 perm   8026 sec   (491 perm/sec)   p_kst 1.873604e-03   p_cons 2.791878e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.338931e-07	k: 0	n:3950000
Cons ci ratio: 1.131605e+00	ci left: 1.390168e-06	ci right 4.982789e-06	k: 11	n:3950000
KS ci ratio: 4.550173e-02	ci left: 1.832765e-03	ci right 1.918348e-03	k: 7407	n:3950000
CDKN2A   3950000 perm   8064 sec   (490 perm/sec)   p_kst 1.875190e-03   p_cons 2.784810e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.315348e-07	k: 0	n:3960000
Cons ci ratio: 1.131605e+00	ci left: 1.386657e-06	ci right 4.970206e-06	k: 11	n:3960000
KS ci ratio: 4.546189e-02	ci left: 1.831382e-03	ci right 1.916824e-03	k: 7420	n:3960000
CDKN2A   3960000 perm   8102 sec   (489 perm/sec)   p_kst 1.873737e-03   p_cons 2.777778e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.291883e-07	k: 0	n:3970000
Cons ci ratio: 1.131605e+00	ci left: 1.383165e-06	ci right 4.957687e-06	k: 11	n:3970000
KS ci ratio: 4.540074e-02	ci left: 1.831749e-03	ci right 1.917091e-03	k: 7440	n:3970000
CDKN2A   3970000 perm   8140 sec   (488 perm/sec)   p_kst 1.874055e-03   p_cons 2.770781e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.268537e-07	k: 0	n:3980000
Cons ci ratio: 1.131605e+00	ci left: 1.379689e-06	ci right 4.945230e-06	k: 11	n:3980000
KS ci ratio: 4.533680e-02	ci left: 1.832363e-03	ci right 1.917610e-03	k: 7461	n:3980000
CDKN2A   3980000 perm   8178 sec   (487 perm/sec)   p_kst 1.874623e-03   p_cons 2.763819e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.245308e-07	k: 0	n:3990000
Cons ci ratio: 1.131605e+00	ci left: 1.376231e-06	ci right 4.932836e-06	k: 11	n:3990000
KS ci ratio: 4.527313e-02	ci left: 1.832975e-03	ci right 1.918127e-03	k: 7482	n:3990000
CDKN2A   3990000 perm   8217 sec   (486 perm/sec)   p_kst 1.875188e-03   p_cons 2.756892e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.222194e-07	k: 0	n:4000000
Cons ci ratio: 1.131605e+00	ci left: 1.372791e-06	ci right 4.920504e-06	k: 11	n:4000000
KS ci ratio: 4.522482e-02	ci left: 1.832347e-03	ci right 1.917377e-03	k: 7498	n:4000000
CDKN2A   4000000 perm   8255 sec   (485 perm/sec)   p_kst 1.874500e-03   p_cons 2.750000e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.199196e-07	k: 0	n:4010000
Cons ci ratio: 1.131605e+00	ci left: 1.369367e-06	ci right 4.908234e-06	k: 11	n:4010000
KS ci ratio: 4.515260e-02	ci left: 1.833695e-03	ci right 1.918648e-03	k: 7522	n:4010000
CDKN2A   4010000 perm   8294 sec   (484 perm/sec)   p_kst 1.875810e-03   p_cons 2.743142e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.176313e-07	k: 0	n:4020000
Cons ci ratio: 1.131605e+00	ci left: 1.365961e-06	ci right 4.896024e-06	k: 11	n:4020000
KS ci ratio: 4.510767e-02	ci left: 1.832823e-03	ci right 1.917649e-03	k: 7537	n:4020000
CDKN2A   4020000 perm   8331 sec   (483 perm/sec)   p_kst 1.874876e-03   p_cons 2.736318e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.153543e-07	k: 0	n:4030000
Cons ci ratio: 1.131605e+00	ci left: 1.362572e-06	ci right 4.883875e-06	k: 11	n:4030000
KS ci ratio: 4.506587e-02	ci left: 1.831710e-03	ci right 1.916403e-03	k: 7551	n:4030000
CDKN2A   4030000 perm   8369 sec   (482 perm/sec)   p_kst 1.873697e-03   p_cons 2.729529e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.130886e-07	k: 0	n:4040000
Cons ci ratio: 1.131605e+00	ci left: 1.359199e-06	ci right 4.871786e-06	k: 11	n:4040000
KS ci ratio: 4.500035e-02	ci left: 1.832560e-03	ci right 1.917167e-03	k: 7573	n:4040000
CDKN2A   4040000 perm   8408 sec   (480 perm/sec)   p_kst 1.874505e-03   p_cons 2.722772e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.108340e-07	k: 0	n:4050000
Cons ci ratio: 1.131605e+00	ci left: 1.355843e-06	ci right 4.859757e-06	k: 11	n:4050000
KS ci ratio: 4.496181e-02	ci left: 1.831209e-03	ci right 1.915679e-03	k: 7586	n:4050000
CDKN2A   4050000 perm   8447 sec   (479 perm/sec)   p_kst 1.873086e-03   p_cons 2.716049e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.085906e-07	k: 0	n:4060000
Cons ci ratio: 1.131605e+00	ci left: 1.352503e-06	ci right 4.847788e-06	k: 11	n:4060000
KS ci ratio: 4.491449e-02	ci left: 1.830595e-03	ci right 1.914946e-03	k: 7602	n:4060000
CDKN2A   4060000 perm   8485 sec   (478 perm/sec)   p_kst 1.872414e-03   p_cons 2.709360e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.063582e-07	k: 0	n:4070000
Cons ci ratio: 1.131605e+00	ci left: 1.349180e-06	ci right 4.835877e-06	k: 11	n:4070000
KS ci ratio: 4.485553e-02	ci left: 1.830956e-03	ci right 1.915210e-03	k: 7622	n:4070000
CDKN2A   4070000 perm   8524 sec   (477 perm/sec)   p_kst 1.872727e-03   p_cons 2.702703e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.041367e-07	k: 0	n:4080000
Cons ci ratio: 1.131605e+00	ci left: 1.345873e-06	ci right 4.824024e-06	k: 11	n:4080000
KS ci ratio: 4.478799e-02	ci left: 1.832043e-03	ci right 1.916216e-03	k: 7645	n:4080000
CDKN2A   4080000 perm   8563 sec   (476 perm/sec)   p_kst 1.873775e-03   p_cons 2.696078e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.019261e-07	k: 0	n:4090000
Cons ci ratio: 1.131605e+00	ci left: 1.342583e-06	ci right 4.812229e-06	k: 11	n:4090000
KS ci ratio: 4.474999e-02	ci left: 1.830706e-03	ci right 1.914745e-03	k: 7658	n:4090000
CDKN2A   4090000 perm   8603 sec   (475 perm/sec)   p_kst 1.872372e-03   p_cons 2.689487e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.997263e-07	k: 0	n:4100000
Cons ci ratio: 1.131605e+00	ci left: 1.339308e-06	ci right 4.800492e-06	k: 11	n:4100000
KS ci ratio: 4.469750e-02	ci left: 1.830582e-03	ci right 1.914514e-03	k: 7676	n:4100000
CDKN2A   4100000 perm   8643 sec   (474 perm/sec)   p_kst 1.872195e-03   p_cons 2.682927e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.975372e-07	k: 0	n:4110000
Cons ci ratio: 1.131605e+00	ci left: 1.336049e-06	ci right 4.788812e-06	k: 11	n:4110000
KS ci ratio: 4.461036e-02	ci left: 1.833346e-03	ci right 1.917237e-03	k: 7706	n:4110000
CDKN2A   4110000 perm   8682 sec   (473 perm/sec)   p_kst 1.874939e-03   p_cons 2.676399e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.953587e-07	k: 0	n:4120000
Cons ci ratio: 1.131605e+00	ci left: 1.332807e-06	ci right 4.777189e-06	k: 11	n:4120000
KS ci ratio: 4.457571e-02	ci left: 1.831776e-03	ci right 1.915528e-03	k: 7718	n:4120000
CDKN2A   4120000 perm   8722 sec   (472 perm/sec)   p_kst 1.873301e-03   p_cons 2.669903e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.931908e-07	k: 0	n:4130000
Cons ci ratio: 1.131605e+00	ci left: 1.329580e-06	ci right 4.765622e-06	k: 11	n:4130000
KS ci ratio: 4.452672e-02	ci left: 1.831411e-03	ci right 1.915052e-03	k: 7735	n:4130000
CDKN2A   4130000 perm   8761 sec   (471 perm/sec)   p_kst 1.872881e-03   p_cons 2.663438e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.910333e-07	k: 0	n:4140000
Cons ci ratio: 1.131605e+00	ci left: 1.326368e-06	ci right 4.754111e-06	k: 11	n:4140000
KS ci ratio: 4.447501e-02	ci left: 1.831287e-03	ci right 1.914823e-03	k: 7753	n:4140000
CDKN2A   4140000 perm   8801 sec   (470 perm/sec)   p_kst 1.872705e-03   p_cons 2.657005e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.888862e-07	k: 0	n:4150000
Cons ci ratio: 1.131605e+00	ci left: 1.323172e-06	ci right 4.742655e-06	k: 11	n:4150000
KS ci ratio: 4.442062e-02	ci left: 1.831402e-03	ci right 1.914838e-03	k: 7772	n:4150000
CDKN2A   4150000 perm   8840 sec   (469 perm/sec)   p_kst 1.872771e-03   p_cons 2.650602e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.867495e-07	k: 0	n:4160000
Cons ci ratio: 1.131605e+00	ci left: 1.319991e-06	ci right 4.731254e-06	k: 11	n:4160000
KS ci ratio: 4.436072e-02	ci left: 1.831991e-03	ci right 1.915339e-03	k: 7793	n:4160000
CDKN2A   4160000 perm   8880 sec   (468 perm/sec)   p_kst 1.873317e-03   p_cons 2.644231e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.846230e-07	k: 0	n:4170000
Cons ci ratio: 1.131605e+00	ci left: 1.316826e-06	ci right 4.719908e-06	k: 11	n:4170000
KS ci ratio: 4.431243e-02	ci left: 1.831630e-03	ci right 1.914868e-03	k: 7810	n:4170000
CDKN2A   4170000 perm   8920 sec   (468 perm/sec)   p_kst 1.872902e-03   p_cons 2.637890e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.825067e-07	k: 0	n:4180000
Cons ci ratio: 1.131605e+00	ci left: 1.313675e-06	ci right 4.708617e-06	k: 11	n:4180000
KS ci ratio: 4.428130e-02	ci left: 1.829850e-03	ci right 1.912948e-03	k: 7821	n:4180000
CDKN2A   4180000 perm   8960 sec   (467 perm/sec)   p_kst 1.871053e-03   p_cons 2.631579e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.804004e-07	k: 0	n:4190000
Cons ci ratio: 1.131605e+00	ci left: 1.310540e-06	ci right 4.697379e-06	k: 11	n:4190000
KS ci ratio: 4.424175e-02	ci left: 1.828787e-03	ci right 1.911760e-03	k: 7835	n:4190000
CDKN2A   4190000 perm   9000 sec   (466 perm/sec)   p_kst 1.869928e-03   p_cons 2.625298e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.783042e-07	k: 0	n:4200000
Cons ci ratio: 1.131605e+00	ci left: 1.307420e-06	ci right 4.686195e-06	k: 11	n:4200000
KS ci ratio: 4.420231e-02	ci left: 1.827729e-03	ci right 1.910579e-03	k: 7849	n:4200000
CDKN2A   4200000 perm   9040 sec   (465 perm/sec)   p_kst 1.868810e-03   p_cons 2.619048e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.762180e-07	k: 0	n:4210000
Cons ci ratio: 1.131605e+00	ci left: 1.304314e-06	ci right 4.675064e-06	k: 11	n:4210000
KS ci ratio: 4.412925e-02	ci left: 1.829496e-03	ci right 1.912284e-03	k: 7875	n:4210000
CDKN2A   4210000 perm   9081 sec   (464 perm/sec)   p_kst 1.870546e-03   p_cons 2.612827e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.741417e-07	k: 0	n:4220000
Cons ci ratio: 1.131605e+00	ci left: 1.301224e-06	ci right 4.663985e-06	k: 11	n:4220000
KS ci ratio: 4.407332e-02	ci left: 1.829847e-03	ci right 1.912545e-03	k: 7895	n:4220000
CDKN2A   4220000 perm   9121 sec   (463 perm/sec)   p_kst 1.870853e-03   p_cons 2.606635e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.720751e-07	k: 0	n:4230000
Cons ci ratio: 1.131605e+00	ci left: 1.298147e-06	ci right 4.652959e-06	k: 11	n:4230000
KS ci ratio: 4.399255e-02	ci left: 1.832302e-03	ci right 1.914954e-03	k: 7924	n:4230000
CDKN2A   4230000 perm   9162 sec   (462 perm/sec)   p_kst 1.873286e-03   p_cons 2.600473e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.700184e-07	k: 0	n:4240000
Cons ci ratio: 1.131605e+00	ci left: 1.295086e-06	ci right 4.641985e-06	k: 11	n:4240000
KS ci ratio: 4.391223e-02	ci left: 1.834745e-03	ci right 1.917353e-03	k: 7953	n:4240000
CDKN2A   4240000 perm   9203 sec   (461 perm/sec)   p_kst 1.875708e-03   p_cons 2.594340e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.679713e-07	k: 0	n:4250000
Cons ci ratio: 1.131605e+00	ci left: 1.292038e-06	ci right 4.631063e-06	k: 11	n:4250000
KS ci ratio: 4.384886e-02	ci left: 1.835780e-03	ci right 1.918312e-03	k: 7976	n:4250000
CDKN2A   4250000 perm   9244 sec   (460 perm/sec)   p_kst 1.876706e-03   p_cons 2.588235e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.659338e-07	k: 0	n:4260000
Cons ci ratio: 1.131605e+00	ci left: 1.289005e-06	ci right 4.620192e-06	k: 11	n:4260000
KS ci ratio: 4.378027e-02	ci left: 1.837275e-03	ci right 1.919742e-03	k: 8001	n:4260000
CDKN2A   4260000 perm   9284 sec   (459 perm/sec)   p_kst 1.878169e-03   p_cons 2.582160e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.639058e-07	k: 0	n:4270000
Cons ci ratio: 1.131605e+00	ci left: 1.285987e-06	ci right 4.609372e-06	k: 11	n:4270000
KS ci ratio: 4.374205e-02	ci left: 1.836215e-03	ci right 1.918561e-03	k: 8015	n:4270000
CDKN2A   4270000 perm   9325 sec   (458 perm/sec)   p_kst 1.877049e-03   p_cons 2.576112e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.618874e-07	k: 0	n:4280000
Cons ci ratio: 1.131605e+00	ci left: 1.282982e-06	ci right 4.598602e-06	k: 11	n:4280000
KS ci ratio: 4.367941e-02	ci left: 1.837240e-03	ci right 1.919511e-03	k: 8038	n:4280000
CDKN2A   4280000 perm   9366 sec   (457 perm/sec)   p_kst 1.878037e-03   p_cons 2.570093e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.598783e-07	k: 0	n:4290000
Cons ci ratio: 1.131605e+00	ci left: 1.279991e-06	ci right 4.587883e-06	k: 11	n:4290000
KS ci ratio: 4.362517e-02	ci left: 1.837569e-03	ci right 1.919749e-03	k: 8058	n:4290000
CDKN2A   4290000 perm   9407 sec   (456 perm/sec)   p_kst 1.878322e-03   p_cons 2.564103e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.578786e-07	k: 0	n:4300000
Cons ci ratio: 1.131605e+00	ci left: 1.277015e-06	ci right 4.577214e-06	k: 11	n:4300000
KS ci ratio: 4.357654e-02	ci left: 1.837436e-03	ci right 1.919516e-03	k: 8076	n:4300000
CDKN2A   4300000 perm   9448 sec   (455 perm/sec)   p_kst 1.878140e-03   p_cons 2.558140e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.558881e-07	k: 0	n:4310000
Cons ci ratio: 1.131605e+00	ci left: 1.274052e-06	ci right 4.566594e-06	k: 11	n:4310000
KS ci ratio: 4.352807e-02	ci left: 1.837303e-03	ci right 1.919285e-03	k: 8094	n:4310000
CDKN2A   4310000 perm   9490 sec   (454 perm/sec)   p_kst 1.877958e-03   p_cons 2.552204e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.539069e-07	k: 0	n:4320000
Cons ci ratio: 1.131605e+00	ci left: 1.271103e-06	ci right 4.556023e-06	k: 11	n:4320000
KS ci ratio: 4.347707e-02	ci left: 1.837401e-03	ci right 1.919288e-03	k: 8113	n:4320000
CDKN2A   4320000 perm   9532 sec   (453 perm/sec)   p_kst 1.878009e-03   p_cons 2.546296e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.519348e-07	k: 0	n:4330000
Cons ci ratio: 1.131605e+00	ci left: 1.268167e-06	ci right 4.545501e-06	k: 11	n:4330000
KS ci ratio: 4.341022e-02	ci left: 1.838868e-03	ci right 1.920692e-03	k: 8138	n:4330000
CDKN2A   4330000 perm   9573 sec   (452 perm/sec)   p_kst 1.879446e-03   p_cons 2.540416e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.499719e-07	k: 0	n:4340000
Cons ci ratio: 1.131605e+00	ci left: 1.265245e-06	ci right 4.535027e-06	k: 11	n:4340000
KS ci ratio: 4.336496e-02	ci left: 1.838506e-03	ci right 1.920226e-03	k: 8155	n:4340000
CDKN2A   4340000 perm   9614 sec   (451 perm/sec)   p_kst 1.879032e-03   p_cons 2.534562e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.480179e-07	k: 0	n:4350000
Cons ci ratio: 1.131605e+00	ci left: 1.262336e-06	ci right 4.524602e-06	k: 11	n:4350000
KS ci ratio: 4.331719e-02	ci left: 1.838372e-03	ci right 1.919994e-03	k: 8173	n:4350000
CDKN2A   4350000 perm   9656 sec   (450 perm/sec)   p_kst 1.878851e-03   p_cons 2.528736e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.460729e-07	k: 0	n:4360000
Cons ci ratio: 1.131605e+00	ci left: 1.259441e-06	ci right 4.514225e-06	k: 11	n:4360000
KS ci ratio: 4.326693e-02	ci left: 1.838467e-03	ci right 1.919995e-03	k: 8192	n:4360000
CDKN2A   4360000 perm   9698 sec   (450 perm/sec)   p_kst 1.878899e-03   p_cons 2.522936e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.441368e-07	k: 0	n:4370000
Cons ci ratio: 1.131605e+00	ci left: 1.256559e-06	ci right 4.503895e-06	k: 11	n:4370000
KS ci ratio: 4.320631e-02	ci left: 1.839466e-03	ci right 1.920922e-03	k: 8215	n:4370000
CDKN2A   4370000 perm   9741 sec   (449 perm/sec)   p_kst 1.879863e-03   p_cons 2.517162e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.422096e-07	k: 0	n:4380000
Cons ci ratio: 1.131605e+00	ci left: 1.253690e-06	ci right 4.493612e-06	k: 11	n:4380000
KS ci ratio: 4.316431e-02	ci left: 1.838880e-03	ci right 1.920228e-03	k: 8231	n:4380000
CDKN2A   4380000 perm   9782 sec   (448 perm/sec)   p_kst 1.879224e-03   p_cons 2.511416e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.402911e-07	k: 0	n:4390000
Cons ci ratio: 1.131605e+00	ci left: 1.250834e-06	ci right 4.483376e-06	k: 11	n:4390000
KS ci ratio: 4.312506e-02	ci left: 1.838071e-03	ci right 1.919308e-03	k: 8246	n:4390000
CDKN2A   4390000 perm   9825 sec   (447 perm/sec)   p_kst 1.878360e-03   p_cons 2.505695e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.383813e-07	k: 0	n:4400000
Cons ci ratio: 1.131605e+00	ci left: 1.247992e-06	ci right 4.473186e-06	k: 11	n:4400000
KS ci ratio: 4.308330e-02	ci left: 1.837491e-03	ci right 1.918622e-03	k: 8262	n:4400000
CDKN2A   4400000 perm   9867 sec   (446 perm/sec)   p_kst 1.877727e-03   p_cons 2.500000e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.364803e-07	k: 0	n:4410000
Cons ci ratio: 1.131605e+00	ci left: 1.245162e-06	ci right 4.463043e-06	k: 11	n:4410000
KS ci ratio: 4.303645e-02	ci left: 1.837362e-03	ci right 1.918397e-03	k: 8280	n:4410000
CDKN2A   4410000 perm   9909 sec   (445 perm/sec)   p_kst 1.877551e-03   p_cons 2.494331e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.345878e-07	k: 0	n:4420000
Cons ci ratio: 1.131605e+00	ci left: 1.242345e-06	ci right 4.452946e-06	k: 11	n:4420000
KS ci ratio: 4.298976e-02	ci left: 1.837233e-03	ci right 1.918173e-03	k: 8298	n:4420000
CDKN2A   4420000 perm   9951 sec   (444 perm/sec)   p_kst 1.877376e-03   p_cons 2.488688e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.327038e-07	k: 0	n:4430000
Cons ci ratio: 1.131605e+00	ci left: 1.239540e-06	ci right 4.442894e-06	k: 11	n:4430000
KS ci ratio: 4.293546e-02	ci left: 1.837776e-03	ci right 1.918634e-03	k: 8319	n:4430000
CDKN2A   4430000 perm   9994 sec   (443 perm/sec)   p_kst 1.877878e-03   p_cons 2.483070e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.308284e-07	k: 0	n:4440000
Cons ci ratio: 1.131605e+00	ci left: 1.236748e-06	ci right 4.432887e-06	k: 11	n:4440000
KS ci ratio: 4.290199e-02	ci left: 1.836533e-03	ci right 1.917272e-03	k: 8332	n:4440000
CDKN2A   4440000 perm   10037 sec   (442 perm/sec)   p_kst 1.876577e-03   p_cons 2.477477e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.289613e-07	k: 0	n:4450000
Cons ci ratio: 1.131605e+00	ci left: 1.233969e-06	ci right 4.422926e-06	k: 11	n:4450000
KS ci ratio: 4.285059e-02	ci left: 1.836852e-03	ci right 1.917506e-03	k: 8352	n:4450000
CDKN2A   4450000 perm   10080 sec   (441 perm/sec)   p_kst 1.876854e-03   p_cons 2.471910e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.271027e-07	k: 0	n:4460000
Cons ci ratio: 1.131605e+00	ci left: 1.231202e-06	ci right 4.413009e-06	k: 11	n:4460000
KS ci ratio: 4.278914e-02	ci left: 1.838057e-03	ci right 1.918645e-03	k: 8376	n:4460000
CDKN2A   4460000 perm   10123 sec   (441 perm/sec)   p_kst 1.878027e-03   p_cons 2.466368e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.252523e-07	k: 0	n:4470000
Cons ci ratio: 1.131605e+00	ci left: 1.228448e-06	ci right 4.403136e-06	k: 11	n:4470000
KS ci ratio: 4.274069e-02	ci left: 1.838150e-03	ci right 1.918649e-03	k: 8395	n:4470000
CDKN2A   4470000 perm   10166 sec   (440 perm/sec)   p_kst 1.878076e-03   p_cons 2.460850e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.234103e-07	k: 0	n:4480000
Cons ci ratio: 1.131605e+00	ci left: 1.225706e-06	ci right 4.393308e-06	k: 11	n:4480000
KS ci ratio: 4.270004e-02	ci left: 1.837581e-03	ci right 1.917976e-03	k: 8411	n:4480000
CDKN2A   4480000 perm   10208 sec   (439 perm/sec)   p_kst 1.877455e-03   p_cons 2.455357e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.215764e-07	k: 0	n:4490000
Cons ci ratio: 1.131605e+00	ci left: 1.222976e-06	ci right 4.383523e-06	k: 11	n:4490000
KS ci ratio: 4.264430e-02	ci left: 1.838336e-03	ci right 1.918656e-03	k: 8433	n:4490000
CDKN2A   4490000 perm   10251 sec   (438 perm/sec)   p_kst 1.878174e-03   p_cons 2.449889e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.197507e-07	k: 0	n:4500000
Cons ci ratio: 1.131605e+00	ci left: 1.220258e-06	ci right 4.373782e-06	k: 11	n:4500000
KS ci ratio: 4.261402e-02	ci left: 1.836889e-03	ci right 1.917088e-03	k: 8445	n:4500000
CDKN2A   4500000 perm   10295 sec   (437 perm/sec)   p_kst 1.876667e-03   p_cons 2.444444e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.179330e-07	k: 0	n:4510000
Cons ci ratio: 1.131605e+00	ci left: 1.217553e-06	ci right 4.364084e-06	k: 11	n:4510000
KS ci ratio: 4.256869e-02	ci left: 1.836764e-03	ci right 1.916871e-03	k: 8463	n:4510000
CDKN2A   4510000 perm   10337 sec   (436 perm/sec)   p_kst 1.876497e-03   p_cons 2.439024e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.161234e-07	k: 0	n:4520000
Cons ci ratio: 1.131605e+00	ci left: 1.214859e-06	ci right 4.354429e-06	k: 11	n:4520000
KS ci ratio: 4.253355e-02	ci left: 1.835765e-03	ci right 1.915760e-03	k: 8477	n:4520000
CDKN2A   4520000 perm   10381 sec   (435 perm/sec)   p_kst 1.875442e-03   p_cons 2.433628e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.143218e-07	k: 0	n:4530000
Cons ci ratio: 1.131605e+00	ci left: 1.212177e-06	ci right 4.344817e-06	k: 11	n:4530000
KS ci ratio: 4.247345e-02	ci left: 1.836954e-03	ci right 1.916885e-03	k: 8501	n:4530000
CDKN2A   4530000 perm   10424 sec   (435 perm/sec)   p_kst 1.876600e-03   p_cons 2.428256e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.125282e-07	k: 0	n:4540000
Cons ci ratio: 1.131605e+00	ci left: 1.209507e-06	ci right 4.335247e-06	k: 11	n:4540000
KS ci ratio: 4.241610e-02	ci left: 1.837920e-03	ci right 1.917783e-03	k: 8524	n:4540000
CDKN2A   4540000 perm   10467 sec   (434 perm/sec)   p_kst 1.877533e-03   p_cons 2.422907e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.107424e-07	k: 0	n:4550000
Cons ci ratio: 1.131605e+00	ci left: 1.206849e-06	ci right 4.325719e-06	k: 11	n:4550000
KS ci ratio: 4.235401e-02	ci left: 1.839317e-03	ci right 1.919121e-03	k: 8549	n:4550000
CDKN2A   4550000 perm   10510 sec   (433 perm/sec)   p_kst 1.878901e-03   p_cons 2.417582e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.089645e-07	k: 0	n:4560000
Cons ci ratio: 1.131605e+00	ci left: 1.204202e-06	ci right 4.316232e-06	k: 11	n:4560000
KS ci ratio: 4.229467e-02	ci left: 1.840491e-03	ci right 1.920231e-03	k: 8573	n:4560000
CDKN2A   4560000 perm   10554 sec   (432 perm/sec)   p_kst 1.880044e-03   p_cons 2.412281e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.071943e-07	k: 0	n:4570000
Cons ci ratio: 1.131605e+00	ci left: 1.201567e-06	ci right 4.306788e-06	k: 11	n:4570000
KS ci ratio: 4.225527e-02	ci left: 1.839928e-03	ci right 1.919567e-03	k: 8589	n:4570000
CDKN2A   4570000 perm   10597 sec   (431 perm/sec)   p_kst 1.879431e-03   p_cons 2.407002e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.054319e-07	k: 0	n:4580000
Cons ci ratio: 1.131605e+00	ci left: 1.198944e-06	ci right 4.297384e-06	k: 11	n:4580000
KS ci ratio: 4.221844e-02	ci left: 1.839151e-03	ci right 1.918686e-03	k: 8604	n:4580000
CDKN2A   4580000 perm   10640 sec   (430 perm/sec)   p_kst 1.878603e-03   p_cons 2.401747e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.036771e-07	k: 0	n:4590000
Cons ci ratio: 1.131605e+00	ci left: 1.196332e-06	ci right 4.288022e-06	k: 11	n:4590000
KS ci ratio: 4.216456e-02	ci left: 1.839887e-03	ci right 1.919349e-03	k: 8626	n:4590000
CDKN2A   4590000 perm   10684 sec   (430 perm/sec)   p_kst 1.879303e-03   p_cons 2.396514e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.019300e-07	k: 0	n:4600000
Cons ci ratio: 1.131605e+00	ci left: 1.193731e-06	ci right 4.278700e-06	k: 11	n:4600000
KS ci ratio: 4.211821e-02	ci left: 1.839974e-03	ci right 1.919351e-03	k: 8645	n:4600000
CDKN2A   4600000 perm   10729 sec   (429 perm/sec)   p_kst 1.879348e-03   p_cons 2.391304e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.001904e-07	k: 0	n:4610000
Cons ci ratio: 1.131605e+00	ci left: 1.191142e-06	ci right 4.269419e-06	k: 11	n:4610000
KS ci ratio: 4.205742e-02	ci left: 1.841349e-03	ci right 1.920667e-03	k: 8670	n:4610000
CDKN2A   4610000 perm   10772 sec   (428 perm/sec)   p_kst 1.880694e-03   p_cons 2.386117e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.984584e-07	k: 0	n:4620000
Cons ci ratio: 1.131605e+00	ci left: 1.188563e-06	ci right 4.260177e-06	k: 11	n:4620000
KS ci ratio: 4.200899e-02	ci left: 1.841647e-03	ci right 1.920885e-03	k: 8690	n:4620000
CDKN2A   4620000 perm   10816 sec   (427 perm/sec)   p_kst 1.880952e-03   p_cons 2.380952e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.967339e-07	k: 0	n:4630000
Cons ci ratio: 1.131605e+00	ci left: 1.185996e-06	ci right 4.250976e-06	k: 11	n:4630000
KS ci ratio: 4.194626e-02	ci left: 1.843226e-03	ci right 1.922410e-03	k: 8716	n:4630000
CDKN2A   4630000 perm   10861 sec   (426 perm/sec)   p_kst 1.882505e-03   p_cons 2.375810e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.950168e-07	k: 0	n:4640000
Cons ci ratio: 1.131605e+00	ci left: 1.183440e-06	ci right 4.241815e-06	k: 11	n:4640000
KS ci ratio: 4.190543e-02	ci left: 1.842879e-03	ci right 1.921969e-03	k: 8733	n:4640000
CDKN2A   4640000 perm   10905 sec   (425 perm/sec)   p_kst 1.882112e-03   p_cons 2.370690e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.933071e-07	k: 0	n:4650000
Cons ci ratio: 1.131605e+00	ci left: 1.180895e-06	ci right 4.232693e-06	k: 11	n:4650000
KS ci ratio: 4.185274e-02	ci left: 1.843597e-03	ci right 1.922617e-03	k: 8755	n:4650000
CDKN2A   4650000 perm   10949 sec   (425 perm/sec)   p_kst 1.882796e-03   p_cons 2.365591e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.916047e-07	k: 0	n:4660000
Cons ci ratio: 1.131605e+00	ci left: 1.178361e-06	ci right 4.223609e-06	k: 11	n:4660000
KS ci ratio: 4.181695e-02	ci left: 1.842826e-03	ci right 1.921743e-03	k: 8770	n:4660000
CDKN2A   4660000 perm   10993 sec   (424 perm/sec)   p_kst 1.881974e-03   p_cons 2.360515e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.899096e-07	k: 0	n:4670000
Cons ci ratio: 1.131605e+00	ci left: 1.175838e-06	ci right 4.214565e-06	k: 11	n:4670000
KS ci ratio: 4.177173e-02	ci left: 1.842906e-03	ci right 1.921739e-03	k: 8789	n:4670000
CDKN2A   4670000 perm   11038 sec   (423 perm/sec)   p_kst 1.882013e-03   p_cons 2.355460e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.882218e-07	k: 0	n:4680000
Cons ci ratio: 1.131605e+00	ci left: 1.173325e-06	ci right 4.205560e-06	k: 11	n:4680000
KS ci ratio: 4.171954e-02	ci left: 1.843620e-03	ci right 1.922383e-03	k: 8811	n:4680000
CDKN2A   4680000 perm   11082 sec   (422 perm/sec)   p_kst 1.882692e-03   p_cons 2.350427e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.865412e-07	k: 0	n:4690000
Cons ci ratio: 1.131605e+00	ci left: 1.170824e-06	ci right 4.196593e-06	k: 11	n:4690000
KS ci ratio: 4.167464e-02	ci left: 1.843698e-03	ci right 1.922378e-03	k: 8830	n:4690000
CDKN2A   4690000 perm   11128 sec   (421 perm/sec)   p_kst 1.882729e-03   p_cons 2.345416e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.848677e-07	k: 0	n:4700000
Cons ci ratio: 1.131605e+00	ci left: 1.168333e-06	ci right 4.187664e-06	k: 11	n:4700000
KS ci ratio: 4.162752e-02	ci left: 1.843986e-03	ci right 1.922587e-03	k: 8850	n:4700000
CDKN2A   4700000 perm   11173 sec   (421 perm/sec)   p_kst 1.882979e-03   p_cons 2.340426e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.832013e-07	k: 0	n:4710000
Cons ci ratio: 1.131605e+00	ci left: 1.165852e-06	ci right 4.178773e-06	k: 11	n:4710000
KS ci ratio: 4.156179e-02	ci left: 1.845954e-03	ci right 1.924512e-03	k: 8878	n:4710000
CDKN2A   4710000 perm   11217 sec   (420 perm/sec)   p_kst 1.884926e-03   p_cons 2.335456e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.815419e-07	k: 0	n:4720000
Cons ci ratio: 1.131605e+00	ci left: 1.163382e-06	ci right 4.169920e-06	k: 11	n:4720000
KS ci ratio: 4.151272e-02	ci left: 1.846446e-03	ci right 1.924930e-03	k: 8899	n:4720000
CDKN2A   4720000 perm   11262 sec   (419 perm/sec)   p_kst 1.885381e-03   p_cons 2.330508e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.798896e-07	k: 0	n:4730000
Cons ci ratio: 1.131605e+00	ci left: 1.160922e-06	ci right 4.161104e-06	k: 11	n:4730000
KS ci ratio: 4.148946e-02	ci left: 1.844635e-03	ci right 1.922996e-03	k: 8909	n:4730000
CDKN2A   4730000 perm   11308 sec   (418 perm/sec)   p_kst 1.883510e-03   p_cons 2.325581e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.782443e-07	k: 0	n:4740000
Cons ci ratio: 1.131605e+00	ci left: 1.158473e-06	ci right 4.152325e-06	k: 11	n:4740000
KS ci ratio: 4.145459e-02	ci left: 1.843875e-03	ci right 1.922137e-03	k: 8924	n:4740000
CDKN2A   4740000 perm   11353 sec   (418 perm/sec)   p_kst 1.882700e-03   p_cons 2.320675e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.766059e-07	k: 0	n:4750000
Cons ci ratio: 1.131605e+00	ci left: 1.156034e-06	ci right 4.143583e-06	k: 11	n:4750000
KS ci ratio: 4.141982e-02	ci left: 1.843118e-03	ci right 1.921281e-03	k: 8939	n:4750000
CDKN2A   4750000 perm   11399 sec   (417 perm/sec)   p_kst 1.881895e-03   p_cons 2.315789e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.749744e-07	k: 0	n:4760000
Cons ci ratio: 1.131605e+00	ci left: 1.153606e-06	ci right 4.134878e-06	k: 11	n:4760000
KS ci ratio: 4.138281e-02	ci left: 1.842572e-03	ci right 1.920640e-03	k: 8955	n:4760000
CDKN2A   4760000 perm   11444 sec   (416 perm/sec)   p_kst 1.881303e-03   p_cons 2.310924e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.733497e-07	k: 0	n:4770000
Cons ci ratio: 1.131605e+00	ci left: 1.151187e-06	ci right 4.126210e-06	k: 11	n:4770000
KS ci ratio: 4.132285e-02	ci left: 1.844104e-03	ci right 1.922121e-03	k: 8981	n:4770000
CDKN2A   4770000 perm   11490 sec   (415 perm/sec)   p_kst 1.882809e-03   p_cons 2.306080e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.717318e-07	k: 0	n:4780000
Cons ci ratio: 1.131605e+00	ci left: 1.148779e-06	ci right 4.117578e-06	k: 11	n:4780000
KS ci ratio: 4.129300e-02	ci left: 1.842938e-03	ci right 1.920848e-03	k: 8994	n:4780000
CDKN2A   4780000 perm   11536 sec   (414 perm/sec)   p_kst 1.881590e-03   p_cons 2.301255e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.701207e-07	k: 0	n:4790000
Cons ci ratio: 1.131605e+00	ci left: 1.146381e-06	ci right 4.108981e-06	k: 11	n:4790000
KS ci ratio: 4.124487e-02	ci left: 1.843429e-03	ci right 1.921267e-03	k: 9015	n:4790000
CDKN2A   4790000 perm   11582 sec   (414 perm/sec)   p_kst 1.882046e-03   p_cons 2.296451e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.685163e-07	k: 0	n:4800000
Cons ci ratio: 1.131605e+00	ci left: 1.143992e-06	ci right 4.100421e-06	k: 11	n:4800000
KS ci ratio: 4.120377e-02	ci left: 1.843300e-03	ci right 1.921053e-03	k: 9033	n:4800000
CDKN2A   4800000 perm   11627 sec   (413 perm/sec)   p_kst 1.881875e-03   p_cons 2.291667e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.669185e-07	k: 0	n:4810000
Cons ci ratio: 1.131605e+00	ci left: 1.141614e-06	ci right 4.091896e-06	k: 11	n:4810000
KS ci ratio: 4.116734e-02	ci left: 1.842760e-03	ci right 1.920420e-03	k: 9049	n:4810000
CDKN2A   4810000 perm   11674 sec   (412 perm/sec)   p_kst 1.881289e-03   p_cons 2.286902e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.653274e-07	k: 0	n:4820000
Cons ci ratio: 1.131605e+00	ci left: 1.139245e-06	ci right 4.083407e-06	k: 11	n:4820000
KS ci ratio: 4.111511e-02	ci left: 1.843659e-03	ci right 1.921256e-03	k: 9072	n:4820000
CDKN2A   4820000 perm   11719 sec   (411 perm/sec)   p_kst 1.882158e-03   p_cons 2.282158e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.637429e-07	k: 0	n:4830000
Cons ci ratio: 1.131605e+00	ci left: 1.136887e-06	ci right 4.074953e-06	k: 11	n:4830000
KS ci ratio: 4.107439e-02	ci left: 1.843531e-03	ci right 1.921043e-03	k: 9090	n:4830000
CDKN2A   4830000 perm   11766 sec   (411 perm/sec)   p_kst 1.881988e-03   p_cons 2.277433e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.621649e-07	k: 0	n:4840000
Cons ci ratio: 1.131605e+00	ci left: 1.134538e-06	ci right 4.066533e-06	k: 11	n:4840000
KS ci ratio: 4.104508e-02	ci left: 1.842380e-03	ci right 1.919788e-03	k: 9103	n:4840000
CDKN2A   4840000 perm   11812 sec   (410 perm/sec)   p_kst 1.880785e-03   p_cons 2.272727e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.605934e-07	k: 0	n:4850000
Cons ci ratio: 1.131605e+00	ci left: 1.132199e-06	ci right 4.058149e-06	k: 11	n:4850000
KS ci ratio: 4.100006e-02	ci left: 1.842663e-03	ci right 1.919996e-03	k: 9123	n:4850000
CDKN2A   4850000 perm   11859 sec   (409 perm/sec)   p_kst 1.881031e-03   p_cons 2.268041e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.590284e-07	k: 0	n:4860000
Cons ci ratio: 1.131605e+00	ci left: 1.129869e-06	ci right 4.049799e-06	k: 11	n:4860000
KS ci ratio: 4.097091e-02	ci left: 1.841519e-03	ci right 1.918747e-03	k: 9136	n:4860000
CDKN2A   4860000 perm   11905 sec   (408 perm/sec)   p_kst 1.879835e-03   p_cons 2.263374e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.574698e-07	k: 0	n:4870000
Cons ci ratio: 1.131605e+00	ci left: 1.127549e-06	ci right 4.041483e-06	k: 11	n:4870000
KS ci ratio: 4.093061e-02	ci left: 1.841396e-03	ci right 1.918541e-03	k: 9154	n:4870000
CDKN2A   4870000 perm   11951 sec   (407 perm/sec)   p_kst 1.879671e-03   p_cons 2.258727e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.559176e-07	k: 0	n:4880000
Cons ci ratio: 1.131605e+00	ci left: 1.125238e-06	ci right 4.033201e-06	k: 11	n:4880000
KS ci ratio: 4.089714e-02	ci left: 1.840665e-03	ci right 1.917715e-03	k: 9169	n:4880000
CDKN2A   4880000 perm   11998 sec   (407 perm/sec)   p_kst 1.878893e-03   p_cons 2.254098e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.543718e-07	k: 0	n:4890000
Cons ci ratio: 1.131605e+00	ci left: 1.122937e-06	ci right 4.024953e-06	k: 11	n:4890000
KS ci ratio: 4.084816e-02	ci left: 1.841354e-03	ci right 1.918338e-03	k: 9191	n:4890000
CDKN2A   4890000 perm   12044 sec   (406 perm/sec)   p_kst 1.879550e-03   p_cons 2.249489e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.528323e-07	k: 0	n:4900000
Cons ci ratio: 1.131605e+00	ci left: 1.120645e-06	ci right 4.016739e-06	k: 11	n:4900000
KS ci ratio: 4.080378e-02	ci left: 1.841636e-03	ci right 1.918547e-03	k: 9211	n:4900000
CDKN2A   4900000 perm   12090 sec   (405 perm/sec)   p_kst 1.879796e-03   p_cons 2.244898e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.512990e-07	k: 0	n:4910000
Cons ci ratio: 1.131605e+00	ci left: 1.118363e-06	ci right 4.008558e-06	k: 11	n:4910000
KS ci ratio: 4.074850e-02	ci left: 1.842925e-03	ci right 1.919783e-03	k: 9236	n:4910000
CDKN2A   4910000 perm   12138 sec   (405 perm/sec)   p_kst 1.881059e-03   p_cons 2.240326e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.497720e-07	k: 0	n:4920000
Cons ci ratio: 1.131605e+00	ci left: 1.116090e-06	ci right 4.000411e-06	k: 11	n:4920000
KS ci ratio: 4.070886e-02	ci left: 1.842800e-03	ci right 1.919577e-03	k: 9254	n:4920000
CDKN2A   4920000 perm   12184 sec   (404 perm/sec)   p_kst 1.880894e-03   p_cons 2.235772e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.482511e-07	k: 0	n:4930000
Cons ci ratio: 1.131605e+00	ci left: 1.113826e-06	ci right 3.992296e-06	k: 11	n:4930000
KS ci ratio: 4.067153e-02	ci left: 1.842475e-03	ci right 1.919166e-03	k: 9271	n:4930000
CDKN2A   4930000 perm   12232 sec   (403 perm/sec)   p_kst 1.880527e-03   p_cons 2.231237e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.467365e-07	k: 0	n:4940000
Cons ci ratio: 1.131605e+00	ci left: 1.111571e-06	ci right 3.984215e-06	k: 11	n:4940000
KS ci ratio: 4.062335e-02	ci left: 1.843154e-03	ci right 1.919780e-03	k: 9293	n:4940000
CDKN2A   4940000 perm   12280 sec   (402 perm/sec)   p_kst 1.881174e-03   p_cons 2.226721e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.452279e-07	k: 0	n:4950000
Cons ci ratio: 1.131605e+00	ci left: 1.109326e-06	ci right 3.976166e-06	k: 11	n:4950000
KS ci ratio: 4.056226e-02	ci left: 1.845030e-03	ci right 1.921616e-03	k: 9321	n:4950000
CDKN2A   4950000 perm   12327 sec   (402 perm/sec)   p_kst 1.883030e-03   p_cons 2.222222e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.437254e-07	k: 0	n:4960000
Cons ci ratio: 1.131605e+00	ci left: 1.107089e-06	ci right 3.968149e-06	k: 11	n:4960000
KS ci ratio: 4.049927e-02	ci left: 1.847097e-03	ci right 1.923647e-03	k: 9350	n:4960000
CDKN2A   4960000 perm   12375 sec   (401 perm/sec)   p_kst 1.885081e-03   p_cons 2.217742e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.422290e-07	k: 0	n:4970000
Cons ci ratio: 1.131605e+00	ci left: 1.104862e-06	ci right 3.960165e-06	k: 11	n:4970000
KS ci ratio: 4.047767e-02	ci left: 1.845373e-03	ci right 1.921809e-03	k: 9360	n:4970000
CDKN2A   4970000 perm   12423 sec   (400 perm/sec)   p_kst 1.883300e-03   p_cons 2.213280e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.407386e-07	k: 0	n:4980000
Cons ci ratio: 1.131605e+00	ci left: 1.102643e-06	ci right 3.952213e-06	k: 11	n:4980000
KS ci ratio: 4.044097e-02	ci left: 1.845046e-03	ci right 1.921398e-03	k: 9377	n:4980000
CDKN2A   4980000 perm   12472 sec   (399 perm/sec)   p_kst 1.882932e-03   p_cons 2.208835e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.392541e-07	k: 0	n:4990000
Cons ci ratio: 1.131605e+00	ci left: 1.100433e-06	ci right 3.944293e-06	k: 11	n:4990000
KS ci ratio: 4.039791e-02	ci left: 1.845316e-03	ci right 1.921596e-03	k: 9397	n:4990000
CDKN2A   4990000 perm   12520 sec   (399 perm/sec)   p_kst 1.883166e-03   p_cons 2.204409e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.377756e-07	k: 0	n:5000000
Cons ci ratio: 1.131605e+00	ci left: 1.098233e-06	ci right 3.936404e-06	k: 11	n:5000000
KS ci ratio: 4.036358e-02	ci left: 1.844793e-03	ci right 1.920986e-03	k: 9413	n:5000000
CDKN2A   5000000 perm   12568 sec   (398 perm/sec)   p_kst 1.882600e-03   p_cons 2.200000e-06   p_joint 0

Outputting figure to mutsig2_images.part000000000035/CDKN2A.26_1004_5000000_0.0018826_2.2e-06_0.png
                gene_name: CDKN2A
               theta_stop: 3.9 
                    nperm: 5000000 
                     p_ks: 0.0019 
        ci_ks_bounds_left: 0.0018 
       ci_ks_bounds_right: 0.0019 
                   p_cons: 2.20e-06 
      ci_cons_bounds_left: 1.10e-06 
     ci_cons_bounds_right: 3.94e-06 
                  p_joint: 0 
     ci_joint_bounds_left: 0 
    ci_joint_bounds_right: 7.38e-07 

Current progress: 2 percent done.
CDH9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.464026e-02	ci left: 3.304153e-01	ci right 3.490782e-01	k: 3397	n:10000
Cons ci ratio: 4.249072e-02	ci left: 4.498950e-01	ci right 4.695285e-01	k: 4597	n:10000
KS ci ratio: 6.794962e-02	ci left: 2.411415e-01	ci right 2.582045e-01	k: 2496	n:10000
CDH9   10000 perm   2 sec   (4143 perm/sec)   p_kst 2.496000e-01   p_cons 4.597000e-01   p_joint 3.397000e-01

Outputting figure to mutsig2_images.part000000000035/CDH9.19_2414_10000_0.2496_0.4597_0.3397.png
                gene_name: CDH9
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 5 percent done.
CDH8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.102021e-02	ci left: 3.616201e-01	ci right 3.806550e-01	k: 3711	n:10000
Cons ci ratio: 1.343032e-02	ci left: 8.888262e-01	ci right 9.009427e-01	k: 8950	n:10000
KS ci ratio: 6.973651e-02	ci left: 2.316560e-01	ci right 2.484957e-01	k: 2400	n:10000
CDH8   10000 perm   2 sec   (4042 perm/sec)   p_kst 2.400000e-01   p_cons 8.950000e-01   p_joint 3.711000e-01

Outputting figure to mutsig2_images.part000000000035/CDH8.18_2444_10000_0.24_0.895_0.3711.png
                gene_name: CDH8
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 7 percent done.
CDH7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.803301e-02	ci left: 6.522301e-01	ci right 6.708757e-01	k: 6616	n:10000
Cons ci ratio: 7.859457e-02	ci left: 1.913119e-01	ci right 2.070637e-01	k: 1991	n:10000
KS ci ratio: 1.011016e-02	ci left: 9.327839e-01	ci right 9.423592e-01	k: 9377	n:10000
CDH7   10000 perm   2 sec   (4457 perm/sec)   p_kst 9.377000e-01   p_cons 1.991000e-01   p_joint 6.616000e-01

Outputting figure to mutsig2_images.part000000000035/CDH7.11_2402_10000_0.9377_0.1991_0.6616.png
                gene_name: CDH7
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 9 percent done.
CDHR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.139578e-01	ci left: 9.973948e-02	ci right 1.118912e-01	k: 1057	n:10000
Cons ci ratio: 3.134257e-01	ci left: 1.298624e-02	ci right 1.790194e-02	k: 153	n:10000
KS ci ratio: 4.885111e-02	ci left: 3.820160e-01	ci right 4.012472e-01	k: 3916	n:10000
CDHR2   10000 perm   2 sec   (4270 perm/sec)   p_kst 3.916000e-01   p_cons 1.530000e-02   p_joint 1.057000e-01

Joint ci ratio: 1.119101e-01	ci left: 5.455657e-02	ci right 6.107273e-02	k: 1155	n:20000
Cons ci ratio: 2.281111e-01	ci left: 1.288916e-02	ci right 1.625414e-02	k: 290	n:20000
KS ci ratio: 3.553791e-02	ci left: 3.714723e-01	ci right 3.849631e-01	k: 7564	n:20000
CDHR2   20000 perm   5 sec   (3899 perm/sec)   p_kst 3.782000e-01   p_cons 1.450000e-02   p_joint 5.775000e-02

Joint ci ratio: 8.973847e-02	ci left: 5.711026e-02	ci right 6.250871e-02	k: 1793	n:30000
Cons ci ratio: 1.850737e-01	ci left: 1.336863e-02	ci right 1.612652e-02	k: 441	n:30000
KS ci ratio: 2.891501e-02	ci left: 3.743697e-01	ci right 3.853869e-01	k: 11396	n:30000
CDHR2   30000 perm   8 sec   (3748 perm/sec)   p_kst 3.798667e-01   p_cons 1.470000e-02   p_joint 5.976667e-02

Joint ci ratio: 8.256173e-02	ci left: 5.114316e-02	ci right 5.557197e-02	k: 2133	n:40000
Cons ci ratio: 1.615828e-01	ci left: 1.332738e-02	ci right 1.569388e-02	k: 579	n:40000
KS ci ratio: 2.509834e-02	ci left: 3.740427e-01	ci right 3.835749e-01	k: 15152	n:40000
CDHR2   40000 perm   11 sec   (3656 perm/sec)   p_kst 3.788000e-01   p_cons 1.447500e-02   p_joint 5.332500e-02

Joint ci ratio: 9.248965e-02	ci left: 3.307375e-02	ci right 3.630056e-02	k: 1733	n:50000
Cons ci ratio: 1.448288e-01	ci left: 1.339332e-02	ci right 1.550360e-02	k: 721	n:50000
KS ci ratio: 2.264377e-02	ci left: 3.704945e-01	ci right 3.790000e-01	k: 18737	n:50000
CDHR2   50000 perm   14 sec   (3580 perm/sec)   p_kst 3.747400e-01   p_cons 1.442000e-02   p_joint 3.466000e-02

Joint ci ratio: 8.120725e-02	ci left: 3.586319e-02	ci right 3.891510e-02	k: 2242	n:60000
Cons ci ratio: 1.302710e-01	ci left: 1.389738e-02	ci right 1.584995e-02	k: 891	n:60000
KS ci ratio: 2.067863e-02	ci left: 3.706917e-01	ci right 3.784538e-01	k: 22474	n:60000
CDHR2   60000 perm   17 sec   (3508 perm/sec)   p_kst 3.745667e-01   p_cons 1.485000e-02   p_joint 3.736667e-02

Joint ci ratio: 7.301955e-02	ci left: 3.809711e-02	ci right 4.099836e-02	k: 2767	n:70000
Cons ci ratio: 1.194287e-01	ci left: 1.425119e-02	ci right 1.607504e-02	k: 1060	n:70000
KS ci ratio: 1.916386e-02	ci left: 3.705135e-01	ci right 3.776969e-01	k: 26187	n:70000
CDHR2   70000 perm   20 sec   (3441 perm/sec)   p_kst 3.741000e-01   p_cons 1.514286e-02   p_joint 3.952857e-02

Joint ci ratio: 6.648033e-02	ci left: 4.026366e-02	ci right 4.304471e-02	k: 3331	n:80000
Cons ci ratio: 1.110925e-01	ci left: 1.447297e-02	ci right 1.618744e-02	k: 1225	n:80000
KS ci ratio: 1.847606e-02	ci left: 3.567351e-01	ci right 3.634001e-01	k: 28805	n:80000
CDHR2   80000 perm   24 sec   (3362 perm/sec)   p_kst 3.600625e-01   p_cons 1.531250e-02   p_joint 4.163750e-02

Joint ci ratio: 6.099539e-02	ci left: 4.253784e-02	ci right 4.522499e-02	k: 3948	n:90000
Cons ci ratio: 1.053320e-01	ci left: 1.435666e-02	ci right 1.596370e-02	k: 1363	n:90000
KS ci ratio: 1.741803e-02	ci left: 3.569629e-01	ci right 3.632462e-01	k: 32409	n:90000
CDHR2   90000 perm   27 sec   (3304 perm/sec)   p_kst 3.601000e-01   p_cons 1.514444e-02   p_joint 4.386667e-02

Joint ci ratio: 6.234501e-02	ci left: 3.684309e-02	ci right 3.922380e-02	k: 3802	n:100000
Cons ci ratio: 9.921642e-02	ci left: 1.460686e-02	ci right 1.614144e-02	k: 1536	n:100000
KS ci ratio: 1.650955e-02	ci left: 3.575331e-01	ci right 3.634949e-01	k: 36051	n:100000
CDHR2   100000 perm   31 sec   (3252 perm/sec)   p_kst 3.605100e-01   p_cons 1.536000e-02   p_joint 3.802000e-02

Outputting figure to mutsig2_images.part000000000035/CDHR2.7_4057_100000_0.36051_0.01536_0.03802.png
                gene_name: CDHR2
               theta_stop: 0.099 
                    nperm: 100000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.015 
      ci_cons_bounds_left: 0.015 
     ci_cons_bounds_right: 0.016 
                  p_joint: 0.038 
     ci_joint_bounds_left: 0.037 
    ci_joint_bounds_right: 0.039 

Current progress: 11 percent done.
CDH4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.773937e-02	ci left: 6.569607e-01	ci right 6.755424e-01	k: 6663	n:10000
KS ci ratio: 2.128515e-02	ci left: 7.639523e-01	ci right 7.804888e-01	k: 7723	n:10000
CDH4   10000 perm   2 sec   (5092 perm/sec)   p_kst 7.723000e-01   p_cons 6.663000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000035/CDH4.6_2815_10000_0.7723_0.6663_1.png
                gene_name: CDH4
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 14 percent done.
CDHR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.233669e-01	ci left: 8.601581e-02	ci right 9.742332e-02	k: 916	n:10000
Cons ci ratio: 2.228902e-01	ci left: 2.664945e-02	ci right 3.342800e-02	k: 299	n:10000
KS ci ratio: 4.232008e-02	ci left: 4.518913e-01	ci right 4.715310e-01	k: 4617	n:10000
CDHR1   10000 perm   2 sec   (4866 perm/sec)   p_kst 4.617000e-01   p_cons 2.990000e-02   p_joint 9.160000e-02

Joint ci ratio: 9.573051e-02	ci left: 7.363535e-02	ci right 8.108808e-02	k: 1546	n:20000
Cons ci ratio: 1.568044e-01	ci left: 2.791979e-02	ci right 3.271805e-02	k: 605	n:20000
KS ci ratio: 3.000869e-02	ci left: 4.534235e-01	ci right 4.672880e-01	k: 9207	n:20000
CDHR1   20000 perm   5 sec   (4353 perm/sec)   p_kst 4.603500e-01   p_cons 3.025000e-02   p_joint 7.730000e-02

Joint ci ratio: 8.356670e-02	ci left: 6.547070e-02	ci right 7.121324e-02	k: 2049	n:30000
Cons ci ratio: 1.254227e-01	ci left: 2.955233e-02	ci right 3.353907e-02	k: 945	n:30000
KS ci ratio: 2.419993e-02	ci left: 4.608749e-01	ci right 4.721983e-01	k: 13996	n:30000
CDHR1   30000 perm   7 sec   (4160 perm/sec)   p_kst 4.665333e-01   p_cons 3.150000e-02   p_joint 6.830000e-02

Joint ci ratio: 5.546786e-02	ci left: 1.079127e-01	ci right 1.140939e-01	k: 4439	n:40000
Cons ci ratio: 1.011324e-01	ci left: 3.436636e-02	ci right 3.805137e-02	k: 1447	n:40000
KS ci ratio: 2.137785e-02	ci left: 4.517843e-01	ci right 4.615720e-01	k: 18267	n:40000
CDHR1   40000 perm   10 sec   (4026 perm/sec)   p_kst 4.566750e-01   p_cons 3.617500e-02   p_joint 1.109750e-01

Joint ci ratio: 5.505423e-02	ci left: 8.951986e-02	ci right 9.460761e-02	k: 4602	n:50000
Cons ci ratio: 8.999250e-02	ci left: 3.491234e-02	ci right 3.822175e-02	k: 1827	n:50000
KS ci ratio: 1.909011e-02	ci left: 4.531058e-01	ci right 4.618591e-01	k: 22874	n:50000
CDHR1   50000 perm   13 sec   (3930 perm/sec)   p_kst 4.574800e-01   p_cons 3.654000e-02   p_joint 9.204000e-02

Outputting figure to mutsig2_images.part000000000035/CDHR1.6_2850_50000_0.45748_0.03654_0.09204.png
                gene_name: CDHR1
               theta_stop: 0.090 
                    nperm: 50000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.037 
      ci_cons_bounds_left: 0.035 
     ci_cons_bounds_right: 0.038 
                  p_joint: 0.092 
     ci_joint_bounds_left: 0.090 
    ci_joint_bounds_right: 0.095 

Current progress: 16 percent done.
CDKAL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.728142e-02	ci left: 5.151564e-01	ci right 5.348291e-01	k: 5250	n:10000
Cons ci ratio: 5.706448e-02	ci left: 3.113568e-01	ci right 3.297478e-01	k: 3205	n:10000
KS ci ratio: 4.037172e-02	ci left: 4.753600e-01	ci right 4.950486e-01	k: 4852	n:10000
CDKAL1   10000 perm   2 sec   (5191 perm/sec)   p_kst 4.852000e-01   p_cons 3.205000e-01   p_joint 5.250000e-01

Outputting figure to mutsig2_images.part000000000035/CDKAL1.6_1796_10000_0.4852_0.3205_0.525.png
                gene_name: CDKAL1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.53 

Current progress: 18 percent done.
CDH26
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.268928e-02	ci left: 3.468072e-01	ci right 3.656766e-01	k: 3562	n:10000
Cons ci ratio: 7.688723e-02	ci left: 1.983069e-01	ci right 2.142646e-01	k: 2062	n:10000
KS ci ratio: 3.222363e-02	ci left: 5.870082e-01	ci right 6.063355e-01	k: 5967	n:10000
CDH26   10000 perm   2 sec   (5083 perm/sec)   p_kst 5.967000e-01   p_cons 2.062000e-01   p_joint 3.562000e-01

Outputting figure to mutsig2_images.part000000000035/CDH26.5_2593_10000_0.5967_0.2062_0.3562.png
                gene_name: CDH26
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 20 percent done.
CDH6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.084215e-01	ci left: 1.092981e-01	ci right 1.219268e-01	k: 1155	n:10000
Cons ci ratio: 1.745679e-01	ci left: 4.379660e-02	ci right 5.226918e-02	k: 479	n:10000
KS ci ratio: 3.067289e-02	ci left: 6.106037e-01	ci right 6.297263e-01	k: 6202	n:10000
CDH6   10000 perm   2 sec   (4867 perm/sec)   p_kst 6.202000e-01   p_cons 4.790000e-02   p_joint 1.155000e-01

Joint ci ratio: 6.894231e-02	ci left: 1.343318e-01	ci right 1.439734e-01	k: 2782	n:20000
Cons ci ratio: 1.246042e-01	ci left: 4.420494e-02	ci right 5.012760e-02	k: 942	n:20000
KS ci ratio: 2.192553e-02	ci left: 6.083152e-01	ci right 6.218513e-01	k: 12302	n:20000
CDH6   20000 perm   5 sec   (4443 perm/sec)   p_kst 6.151000e-01   p_cons 4.710000e-02   p_joint 1.391000e-01

Joint ci ratio: 6.347113e-02	ci left: 1.092083e-01	ci right 1.164002e-01	k: 3383	n:30000
Cons ci ratio: 1.033407e-01	ci left: 4.339680e-02	ci right 4.815833e-02	k: 1372	n:30000
KS ci ratio: 1.792133e-02	ci left: 6.090651e-01	ci right 6.201127e-01	k: 18438	n:30000
CDH6   30000 perm   7 sec   (4272 perm/sec)   p_kst 6.146000e-01   p_cons 4.573333e-02   p_joint 1.127667e-01

Joint ci ratio: 5.117424e-02	ci left: 1.246417e-01	ci right 1.312125e-01	k: 5116	n:40000
Cons ci ratio: 8.928329e-02	ci left: 4.391867e-02	ci right 4.804756e-02	k: 1838	n:40000
KS ci ratio: 1.553193e-02	ci left: 6.094591e-01	ci right 6.190243e-01	k: 24570	n:40000
CDH6   40000 perm   10 sec   (4146 perm/sec)   p_kst 6.142500e-01   p_cons 4.595000e-02   p_joint 1.279000e-01

Outputting figure to mutsig2_images.part000000000035/CDH6.5_2417_40000_0.61425_0.04595_0.1279.png
                gene_name: CDH6
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.046 
      ci_cons_bounds_left: 0.044 
     ci_cons_bounds_right: 0.048 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 23 percent done.
CDK13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.034267e-01	ci left: 3.214923e-02	ci right 3.952436e-02	k: 357	n:10000
Cons ci ratio: 3.571839e-01	ci left: 9.776646e-03	ci right 1.411465e-02	k: 118	n:10000
KS ci ratio: 1.219088e-01	ci left: 8.796014e-02	ci right 9.947780e-02	k: 936	n:10000
CDK13   10000 perm   2 sec   (4058 perm/sec)   p_kst 9.360000e-02   p_cons 1.180000e-02   p_joint 3.570000e-02

Joint ci ratio: 1.681617e-01	ci left: 2.422215e-02	ci right 2.871694e-02	k: 528	n:20000
Cons ci ratio: 2.499297e-01	ci left: 1.063101e-02	ci right 1.371326e-02	k: 242	n:20000
KS ci ratio: 8.525382e-02	ci left: 9.150982e-02	ci right 9.970819e-02	k: 1911	n:20000
CDK13   20000 perm   5 sec   (3742 perm/sec)   p_kst 9.555000e-02   p_cons 1.210000e-02   p_joint 2.640000e-02

Joint ci ratio: 1.246089e-01	ci left: 2.994019e-02	ci right 3.395113e-02	k: 957	n:30000
Cons ci ratio: 2.065198e-01	ci left: 1.064047e-02	ci right 1.312207e-02	k: 355	n:30000
KS ci ratio: 7.041358e-02	ci left: 9.032681e-02	ci right 9.695213e-02	k: 2808	n:30000
CDK13   30000 perm   8 sec   (3609 perm/sec)   p_kst 9.360000e-02   p_cons 1.183333e-02   p_joint 3.190000e-02

Joint ci ratio: 9.926255e-02	ci left: 3.565933e-02	ci right 3.940819e-02	k: 1500	n:40000
Cons ci ratio: 1.811182e-01	ci left: 1.052598e-02	ci right 1.264582e-02	k: 462	n:40000
KS ci ratio: 6.113636e-02	ci left: 9.034352e-02	ci right 9.606570e-02	k: 3727	n:40000
CDK13   40000 perm   11 sec   (3521 perm/sec)   p_kst 9.317500e-02   p_cons 1.155000e-02   p_joint 3.750000e-02

Joint ci ratio: 9.692010e-02	ci left: 3.014251e-02	ci right 3.323218e-02	k: 1583	n:50000
Cons ci ratio: 1.638330e-01	ci left: 1.039198e-02	ci right 1.226540e-02	k: 565	n:50000
KS ci ratio: 5.478591e-02	ci left: 9.032970e-02	ci right 9.543768e-02	k: 4643	n:50000
CDK13   50000 perm   15 sec   (3447 perm/sec)   p_kst 9.286000e-02   p_cons 1.130000e-02   p_joint 3.166000e-02

Joint ci ratio: 9.926334e-02	ci left: 2.407441e-02	ci right 2.660512e-02	k: 1519	n:60000
Cons ci ratio: 1.507074e-01	ci left: 1.030915e-02	ci right 1.200530e-02	k: 668	n:60000
KS ci ratio: 4.994242e-02	ci left: 9.078636e-02	ci right 9.545308e-02	k: 5586	n:60000
CDK13   60000 perm   18 sec   (3373 perm/sec)   p_kst 9.310000e-02   p_cons 1.113333e-02   p_joint 2.531667e-02

Joint ci ratio: 8.031089e-02	ci left: 3.159085e-02	ci right 3.424805e-02	k: 2303	n:70000
Cons ci ratio: 1.407644e-01	ci left: 1.018536e-02	ci right 1.174129e-02	k: 766	n:70000
KS ci ratio: 4.627363e-02	ci left: 9.082997e-02	ci right 9.514669e-02	k: 6508	n:70000
CDK13   70000 perm   21 sec   (3309 perm/sec)   p_kst 9.297143e-02   p_cons 1.094286e-02   p_joint 3.290000e-02

Joint ci ratio: 7.719671e-02	ci left: 3.001829e-02	ci right 3.244086e-02	k: 2497	n:80000
Cons ci ratio: 1.328716e-01	ci left: 1.004694e-02	ci right 1.148887e-02	k: 860	n:80000
KS ci ratio: 4.337142e-02	ci left: 9.063701e-02	ci right 9.466758e-02	k: 7411	n:80000
CDK13   80000 perm   25 sec   (3256 perm/sec)   p_kst 9.263750e-02   p_cons 1.075000e-02   p_joint 3.121250e-02

Joint ci ratio: 7.763909e-02	ci left: 2.647399e-02	ci right 2.862328e-02	k: 2478	n:90000
Cons ci ratio: 1.255760e-01	ci left: 1.003808e-02	ci right 1.139374e-02	k: 963	n:90000
KS ci ratio: 4.085455e-02	ci left: 9.090096e-02	ci right 9.470311e-02	k: 8351	n:90000
CDK13   90000 perm   28 sec   (3202 perm/sec)   p_kst 9.278889e-02   p_cons 1.070000e-02   p_joint 2.753333e-02

Joint ci ratio: 6.889334e-02	ci left: 3.027854e-02	ci right 3.244875e-02	k: 3135	n:100000
Cons ci ratio: 1.137818e-01	ci left: 1.106215e-02	ci right 1.240639e-02	k: 1172	n:100000
KS ci ratio: 3.862514e-02	ci left: 9.157352e-02	ci right 9.519011e-02	k: 9337	n:100000
CDK13   100000 perm   32 sec   (3153 perm/sec)   p_kst 9.337000e-02   p_cons 1.172000e-02   p_joint 3.135000e-02

Joint ci ratio: 7.353704e-02	ci left: 2.425499e-02	ci right 2.611561e-02	k: 2769	n:110000
Cons ci ratio: 1.085847e-01	ci left: 1.107289e-02	ci right 1.235305e-02	k: 1287	n:110000
KS ci ratio: 3.681538e-02	ci left: 9.171361e-02	ci right 9.516240e-02	k: 10277	n:110000
CDK13   110000 perm   35 sec   (3103 perm/sec)   p_kst 9.342727e-02   p_cons 1.170000e-02   p_joint 2.517273e-02

Joint ci ratio: 6.419869e-02	ci left: 2.916508e-02	ci right 3.110771e-02	k: 3615	n:120000
Cons ci ratio: 1.040403e-01	ci left: 1.108301e-02	ci right 1.230743e-02	k: 1402	n:120000
KS ci ratio: 3.525563e-02	ci left: 9.175099e-02	ci right 9.505202e-02	k: 11207	n:120000
CDK13   120000 perm   39 sec   (3057 perm/sec)   p_kst 9.339167e-02   p_cons 1.168333e-02   p_joint 3.012500e-02

Joint ci ratio: 6.249352e-02	ci left: 2.845809e-02	ci right 3.030144e-02	k: 3818	n:130000
Cons ci ratio: 9.979003e-02	ci left: 1.114503e-02	ci right 1.232305e-02	k: 1524	n:130000
KS ci ratio: 3.385561e-02	ci left: 9.189975e-02	ci right 9.507226e-02	k: 12152	n:130000
CDK13   130000 perm   43 sec   (3013 perm/sec)   p_kst 9.347692e-02   p_cons 1.172308e-02   p_joint 2.936923e-02

Outputting figure to mutsig2_images.part000000000035/CDK13.5_4595_130000_0.093477_0.011723_0.029369.png
                gene_name: CDK13
               theta_stop: 0.100 
                    nperm: 130000 
                     p_ks: 0.093 
        ci_ks_bounds_left: 0.092 
       ci_ks_bounds_right: 0.095 
                   p_cons: 0.012 
      ci_cons_bounds_left: 0.011 
     ci_cons_bounds_right: 0.012 
                  p_joint: 0.029 
     ci_joint_bounds_left: 0.028 
    ci_joint_bounds_right: 0.030 

Current progress: 25 percent done.
CDK19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.842438e-02	ci left: 2.385720e-01	ci right 2.555756e-01	k: 2470	n:10000
Cons ci ratio: 7.014019e-02	ci left: 2.295818e-01	ci right 2.463711e-01	k: 2379	n:10000
KS ci ratio: 9.518550e-02	ci left: 1.380551e-01	ci right 1.519524e-01	k: 1449	n:10000
CDK19   10000 perm   2 sec   (5104 perm/sec)   p_kst 1.449000e-01   p_cons 2.379000e-01   p_joint 2.470000e-01

Outputting figure to mutsig2_images.part000000000035/CDK19.5_1561_10000_0.1449_0.2379_0.247.png
                gene_name: CDK19
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 27 percent done.
CDK15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.384107e-02	ci left: 4.344288e-01	ci right 4.540037e-01	k: 4442	n:10000
Cons ci ratio: 7.252190e-02	ci left: 2.178334e-01	ci right 2.343265e-01	k: 2260	n:10000
KS ci ratio: 5.747302e-02	ci left: 3.082813e-01	ci right 3.266251e-01	k: 3174	n:10000
CDK15   10000 perm   2 sec   (6442 perm/sec)   p_kst 3.174000e-01   p_cons 2.260000e-01   p_joint 4.442000e-01

Outputting figure to mutsig2_images.part000000000035/CDK15.4_1203_10000_0.3174_0.226_0.4442.png
                gene_name: CDK15
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 30 percent done.
CDK5RAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.111089e-02	ci left: 9.203848e-01	ci right 9.307656e-01	k: 9257	n:10000
KS ci ratio: 1.144619e-02	ci left: 9.160549e-01	ci right 9.266981e-01	k: 9215	n:10000
CDK5RAP2   10000 perm   2 sec   (4112 perm/sec)   p_kst 9.215000e-01   p_cons 9.257000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000035/CDK5RAP2.4_5834_10000_0.9215_0.9257_1.png
                gene_name: CDK5RAP2
               theta_stop: 0.011 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 32 percent done.
CDON
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.169949e-01	ci left: 2.816365e-02	ci right 3.511272e-02	k: 315	n:10000
Cons ci ratio: 1.541967e-01	ci left: 5.600212e-02	ci right 6.545578e-02	k: 606	n:10000
KS ci ratio: 1.177263e-01	ci left: 9.389515e-02	ci right 1.057391e-01	k: 997	n:10000
CDON   10000 perm   2 sec   (4695 perm/sec)   p_kst 9.970000e-02   p_cons 6.060000e-02   p_joint 3.150000e-02

Joint ci ratio: 9.902981e-02	ci left: 6.904119e-02	ci right 7.628364e-02	k: 1452	n:20000
Cons ci ratio: 1.024142e-01	ci left: 6.474425e-02	ci right 7.178190e-02	k: 1364	n:20000
KS ci ratio: 8.177543e-02	ci left: 9.882035e-02	ci right 1.072955e-01	k: 2060	n:20000
CDON   20000 perm   5 sec   (4225 perm/sec)   p_kst 1.030000e-01   p_cons 6.820000e-02   p_joint 7.260000e-02

Joint ci ratio: 8.161774e-02	ci left: 6.847850e-02	ci right 7.433817e-02	k: 2141	n:30000
Cons ci ratio: 8.268265e-02	ci left: 6.681093e-02	ci right 7.260607e-02	k: 2090	n:30000
KS ci ratio: 6.620417e-02	ci left: 1.011587e-01	ci right 1.081181e-01	k: 3138	n:30000
CDON   30000 perm   7 sec   (4038 perm/sec)   p_kst 1.046000e-01   p_cons 6.966667e-02   p_joint 7.136667e-02

Outputting figure to mutsig2_images.part000000000035/CDON.4_3871_30000_0.1046_0.069667_0.071367.png
                gene_name: CDON
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.070 
      ci_cons_bounds_left: 0.067 
     ci_cons_bounds_right: 0.073 
                  p_joint: 0.071 
     ci_joint_bounds_left: 0.068 
    ci_joint_bounds_right: 0.074 

Current progress: 34 percent done.
CDR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.597904e-02	ci left: 6.856687e-01	ci right 7.038177e-01	k: 6948	n:10000
Cons ci ratio: 2.927630e-02	ci left: 6.324129e-01	ci right 6.513044e-01	k: 6419	n:10000
KS ci ratio: 3.874217e-02	ci left: 4.959503e-01	ci right 5.156463e-01	k: 5058	n:10000
CDR1   10000 perm   2 sec   (5962 perm/sec)   p_kst 5.058000e-01   p_cons 6.419000e-01   p_joint 6.948000e-01

Outputting figure to mutsig2_images.part000000000035/CDR1.4_793_10000_0.5058_0.6419_0.6948.png
                gene_name: CDR1
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.70 

Current progress: 36 percent done.
CDX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.552184e-02	ci left: 8.576357e-01	ci right 8.711513e-01	k: 8645	n:10000
KS ci ratio: 2.847868e-02	ci left: 6.450858e-01	ci right 6.638241e-01	k: 6545	n:10000
CDX2   10000 perm   2 sec   (5837 perm/sec)   p_kst 6.545000e-01   p_cons 8.645000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000035/CDX2.4_954_10000_0.6545_0.8645_1.png
                gene_name: CDX2
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 39 percent done.
CDYL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.502117e-02	ci left: 7.015006e-01	ci right 7.193767e-01	k: 7105	n:10000
Cons ci ratio: 5.381047e-02	ci left: 3.372686e-01	ci right 3.560208e-01	k: 3466	n:10000
KS ci ratio: 8.437554e-03	ci left: 9.515867e-01	ci right 9.597452e-01	k: 9558	n:10000
CDYL2   10000 perm   2 sec   (5592 perm/sec)   p_kst 9.558000e-01   p_cons 3.466000e-01   p_joint 7.105000e-01

Outputting figure to mutsig2_images.part000000000035/CDYL2.4_1549_10000_0.9558_0.3466_0.7105.png
                gene_name: CDYL2
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 41 percent done.
CDHR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.199653e-02	ci left: 5.904206e-01	ci right 6.097211e-01	k: 6001	n:10000
KS ci ratio: 1.341604e-02	ci left: 8.890312e-01	ci right 9.011376e-01	k: 8952	n:10000
CDHR3   10000 perm   2 sec   (5371 perm/sec)   p_kst 8.952000e-01   p_cons 6.001000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000035/CDHR3.3_2734_10000_0.8952_0.6001_1.png
                gene_name: CDHR3
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 43 percent done.
CDK17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.822696e-02	ci left: 1.927894e-01	ci right 2.085854e-01	k: 2006	n:10000
KS ci ratio: 2.508807e-02	ci left: 7.003909e-01	ci right 7.182870e-01	k: 7094	n:10000
CDK17   10000 perm   2 sec   (5678 perm/sec)   p_kst 7.094000e-01   p_cons 2.006000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000035/CDK17.3_1674_10000_0.7094_0.2006_1.png
                gene_name: CDK17
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 45 percent done.
CDK8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.143997e-02	ci left: 2.803261e-01	ci right 2.981968e-01	k: 2892	n:10000
KS ci ratio: 4.261923e-02	ci left: 4.483979e-01	ci right 4.680265e-01	k: 4582	n:10000
CDK8   10000 perm   2 sec   (5910 perm/sec)   p_kst 4.582000e-01   p_cons 2.892000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000035/CDK8.3_1447_10000_0.4582_0.2892_1.png
                gene_name: CDK8
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 48 percent done.
CDKL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.188335e-02	ci left: 5.921269e-01	ci right 6.114137e-01	k: 6018	n:10000
KS ci ratio: 1.979036e-02	ci left: 7.888790e-01	ci right 8.047477e-01	k: 7969	n:10000
CDKL5   10000 perm   2 sec   (5162 perm/sec)   p_kst 7.969000e-01   p_cons 6.018000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000035/CDKL5.3_3173_10000_0.7969_0.6018_1.png
                gene_name: CDKL5
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
CDX4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.268002e-02	ci left: 7.405823e-01	ci right 7.576724e-01	k: 7492	n:10000
KS ci ratio: 2.394806e-02	ci left: 7.193647e-01	ci right 7.369022e-01	k: 7282	n:10000
CDX4   10000 perm   1 sec   (7018 perm/sec)   p_kst 7.282000e-01   p_cons 7.492000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000035/CDX4.3_866_10000_0.7282_0.7492_1.png
                gene_name: CDX4
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 52 percent done.
CEACAM18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.427585e-03	ci left: 9.516910e-01	ci right 9.598408e-01	k: 9559	n:10000
KS ci ratio: 9.418105e-03	ci left: 9.408695e-01	ci right 9.498689e-01	k: 9455	n:10000
CEACAM18   10000 perm   2 sec   (5979 perm/sec)   p_kst 9.455000e-01   p_cons 9.559000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000035/CEACAM18.3_1217_10000_0.9455_0.9559_1.png
                gene_name: CEACAM18
               theta_stop: 0.0094 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 55 percent done.
CEACAM21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.327139e-02	ci left: 7.306776e-01	ci right 7.479828e-01	k: 7394	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
CEACAM21   10000 perm   2 sec   (6516 perm/sec)   p_kst 1   p_cons 7.394000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000035/CEACAM21.3_906_10000_1_0.7394_1.png
                gene_name: CEACAM21
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 57 percent done.
CEACAM6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.335644e-01	ci left: 7.398022e-02	ci right 8.466637e-02	k: 792	n:10000
Cons ci ratio: 1.243397e-01	ci left: 8.475243e-02	ci right 9.608748e-02	k: 903	n:10000
KS ci ratio: 7.514666e-02	ci left: 2.057986e-01	ci right 2.219684e-01	k: 2138	n:10000
CEACAM6   10000 perm   2 sec   (6361 perm/sec)   p_kst 2.138000e-01   p_cons 9.030000e-02   p_joint 7.920000e-02

Joint ci ratio: 5.796656e-02	ci left: 1.806777e-01	ci right 1.915137e-01	k: 3721	n:20000
Cons ci ratio: 8.135796e-02	ci left: 9.975307e-02	ci right 1.082624e-01	k: 2079	n:20000
KS ci ratio: 5.324023e-02	ci left: 2.075408e-01	ci right 2.189427e-01	k: 4264	n:20000
CEACAM6   20000 perm   4 sec   (5586 perm/sec)   p_kst 2.132000e-01   p_cons 1.039500e-01   p_joint 1.860500e-01

Outputting figure to mutsig2_images.part000000000035/CEACAM6.3_1055_20000_0.2132_0.10395_0.18605.png
                gene_name: CEACAM6
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.100 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 59 percent done.
CEACAM8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.733220e-02	ci left: 8.291039e-01	ci right 8.436996e-01	k: 8365	n:10000
Cons ci ratio: 3.297202e-02	ci left: 5.758711e-01	ci right 5.952790e-01	k: 5856	n:10000
KS ci ratio: 3.276867e-02	ci left: 5.788806e-01	ci right 5.982678e-01	k: 5886	n:10000
CEACAM8   10000 perm   2 sec   (6089 perm/sec)   p_kst 5.886000e-01   p_cons 5.856000e-01   p_joint 8.365000e-01

Outputting figure to mutsig2_images.part000000000035/CEACAM8.3_1070_10000_0.5886_0.5856_0.8365.png
                gene_name: CEACAM8
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 61 percent done.
CDH5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.283885e-02	ci left: 1.442309e-01	ci right 1.583729e-01	k: 1512	n:10000
Cons ci ratio: 6.590890e-02	ci left: 2.526106e-01	ci right 2.699286e-01	k: 2612	n:10000
KS ci ratio: 2.148972e-01	ci left: 2.873209e-02	ci right 3.574387e-02	k: 321	n:10000
CDH5   10000 perm   2 sec   (5528 perm/sec)   p_kst 3.210000e-02   p_cons 2.612000e-01   p_joint 1.512000e-01

Joint ci ratio: 4.554833e-02	ci left: 2.640545e-01	ci right 2.764124e-01	k: 5404	n:20000
Cons ci ratio: 4.650258e-02	ci left: 2.560150e-01	ci right 2.682542e-01	k: 5242	n:20000
KS ci ratio: 1.541997e-01	ci left: 2.888197e-02	ci right 3.375555e-02	k: 625	n:20000
CDH5   20000 perm   4 sec   (4959 perm/sec)   p_kst 3.125000e-02   p_cons 2.621000e-01   p_joint 2.702000e-01

Joint ci ratio: 3.669216e-02	ci left: 2.705160e-01	ci right 2.806608e-01	k: 8267	n:30000
Cons ci ratio: 3.834753e-02	ci left: 2.533540e-01	ci right 2.632929e-01	k: 7749	n:30000
KS ci ratio: 1.270260e-01	ci left: 2.880916e-02	ci right 3.274907e-02	k: 922	n:30000
CDH5   30000 perm   6 sec   (4744 perm/sec)   p_kst 3.073333e-02   p_cons 2.583000e-01   p_joint 2.755667e-01

Joint ci ratio: 3.585954e-02	ci left: 2.258831e-01	ci right 2.341561e-01	k: 9200	n:40000
Cons ci ratio: 3.323021e-02	ci left: 2.537920e-01	ci right 2.623931e-01	k: 10323	n:40000
KS ci ratio: 1.103633e-01	ci left: 2.888515e-02	ci right 3.228345e-02	k: 1222	n:40000
CDH5   40000 perm   9 sec   (4602 perm/sec)   p_kst 3.055000e-02   p_cons 2.580750e-01   p_joint 2.300000e-01

Joint ci ratio: 3.179250e-02	ci left: 2.294394e-01	ci right 2.368716e-01	k: 11657	n:50000
Cons ci ratio: 2.976244e-02	ci left: 2.537312e-01	ci right 2.614170e-01	k: 12878	n:50000
KS ci ratio: 9.937633e-02	ci left: 2.867823e-02	ci right 3.169664e-02	k: 1508	n:50000
CDH5   50000 perm   11 sec   (4496 perm/sec)   p_kst 3.016000e-02   p_cons 2.575600e-01   p_joint 2.331400e-01

Outputting figure to mutsig2_images.part000000000035/CDH5.2_2399_50000_0.03016_0.25756_0.23314.png
                gene_name: CDH5
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.030 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 64 percent done.
CDK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.691880e-02	ci left: 8.357199e-01	ci right 8.500797e-01	k: 8430	n:10000
KS ci ratio: 3.817613e-03	ci left: 9.886188e-01	ci right 9.924873e-01	k: 9907	n:10000
CDK1   10000 perm   2 sec   (6620 perm/sec)   p_kst 9.907000e-01   p_cons 8.430000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000035/CDK1.2_934_10000_0.9907_0.843_1.png
                gene_name: CDK1
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 66 percent done.
CDK11B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.830504e-02	ci left: 8.133433e-01	ci right 8.284693e-01	k: 8210	n:10000
KS ci ratio: 1.585788e-02	ci left: 8.524324e-01	ci right 8.661576e-01	k: 8594	n:10000
CDK11B   10000 perm   2 sec   (5701 perm/sec)   p_kst 8.594000e-01   p_cons 8.210000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000035/CDK11B.2_2459_10000_0.8594_0.821_1.png
                gene_name: CDK11B
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
CDK12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.306344e-01	ci left: 7.717981e-02	ci right 8.806479e-02	k: 825	n:10000
Cons ci ratio: 2.212491e-02	ci left: 7.498858e-01	ci right 7.667635e-01	k: 7584	n:10000
KS ci ratio: 2.079888e-01	ci left: 3.072413e-02	ci right 3.795045e-02	k: 342	n:10000
CDK12   10000 perm   2 sec   (4825 perm/sec)   p_kst 3.420000e-02   p_cons 7.584000e-01   p_joint 8.250000e-02

Joint ci ratio: 1.528191e-01	ci left: 2.941145e-02	ci right 3.432589e-02	k: 636	n:20000
Cons ci ratio: 1.576851e-02	ci left: 7.494816e-01	ci right 7.614440e-01	k: 15110	n:20000
KS ci ratio: 1.528191e-01	ci left: 2.941145e-02	ci right 3.432589e-02	k: 636	n:20000
CDK12   20000 perm   5 sec   (4330 perm/sec)   p_kst 3.180000e-02   p_cons 7.555000e-01   p_joint 3.180000e-02

Joint ci ratio: 5.355304e-02	ci left: 1.474601e-01	ci right 1.556075e-01	k: 4545	n:30000
Cons ci ratio: 1.283314e-02	ci left: 7.518033e-01	ci right 7.615470e-01	k: 22701	n:30000
KS ci ratio: 1.250818e-01	ci left: 2.971393e-02	ci right 3.371077e-02	k: 950	n:30000
CDK12   30000 perm   7 sec   (4149 perm/sec)   p_kst 3.166667e-02   p_cons 7.567000e-01   p_joint 1.515000e-01

Joint ci ratio: 9.799510e-05	ci left: 9.999078e-01	ci right 1	k: 40000	n:40000
Cons ci ratio: 1.115232e-02	ci left: 7.511817e-01	ci right 7.596311e-01	k: 30217	n:40000
KS ci ratio: 1.097630e-01	ci left: 2.920146e-02	ci right 3.261709e-02	k: 1235	n:40000
CDK12   40000 perm   10 sec   (4028 perm/sec)   p_kst 3.087500e-02   p_cons 7.554250e-01   p_joint 1

Joint ci ratio: 7.839686e-05	ci left: 9.999262e-01	ci right 1	k: 50000	n:50000
Cons ci ratio: 9.948624e-03	ci left: 7.526127e-01	ci right 7.601575e-01	k: 37820	n:50000
KS ci ratio: 9.824089e-02	ci left: 2.934192e-02	ci right 3.239287e-02	k: 1542	n:50000
CDK12   50000 perm   13 sec   (3933 perm/sec)   p_kst 3.084000e-02   p_cons 7.564000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000035/CDK12.2_4529_50000_0.03084_0.7564_1.png
                gene_name: CDK12
               theta_stop: 0.098 
                    nperm: 50000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
CDK14
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 73 percent done.
CDK18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.673464e-02	ci left: 4.032266e-01	ci right 4.226242e-01	k: 4129	n:10000
Cons ci ratio: 4.273097e-02	ci left: 4.471004e-01	ci right 4.667247e-01	k: 4569	n:10000
KS ci ratio: 1.257984e-01	ci left: 8.290659e-02	ci right 9.413446e-02	k: 884	n:10000
CDK18   10000 perm   2 sec   (6179 perm/sec)   p_kst 8.840000e-02   p_cons 4.569000e-01   p_joint 4.129000e-01

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 3.003588e-02	ci left: 4.529741e-01	ci right 4.668376e-01	k: 9198	n:20000
KS ci ratio: 8.959483e-02	ci left: 8.342314e-02	ci right 9.129730e-02	k: 1746	n:20000
CDK18   20000 perm   4 sec   (5428 perm/sec)   p_kst 8.730000e-02   p_cons 4.599000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000035/CDK18.2_1575_20000_0.0873_0.4599_1.png
                gene_name: CDK18
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.087 
        ci_ks_bounds_left: 0.083 
       ci_ks_bounds_right: 0.091 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
CDK5RAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.555591e-03	ci left: 9.774889e-01	ci right 9.830263e-01	k: 9804	n:10000
Cons ci ratio: 1.524926e-02	ci left: 8.618211e-01	ci right 8.751635e-01	k: 8686	n:10000
KS ci ratio: 1.318628e-02	ci left: 8.923120e-01	ci right 9.042548e-01	k: 8984	n:10000
CDK5RAP1   10000 perm   2 sec   (5875 perm/sec)   p_kst 8.984000e-01   p_cons 8.686000e-01   p_joint 9.804000e-01

Outputting figure to mutsig2_images.part000000000035/CDK5RAP1.2_1816_10000_0.8984_0.8686_0.9804.png
                gene_name: CDK5RAP1
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 77 percent done.
CDK5RAP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.378463e-02	ci left: 8.837035e-01	ci right 8.960683e-01	k: 8900	n:10000
Cons ci ratio: 4.326865e-02	ci left: 4.409135e-01	ci right 4.605152e-01	k: 4507	n:10000
KS ci ratio: 7.004364e-02	ci left: 2.300756e-01	ci right 2.468770e-01	k: 2384	n:10000
CDK5RAP3   10000 perm   2 sec   (6234 perm/sec)   p_kst 2.384000e-01   p_cons 4.507000e-01   p_joint 8.900000e-01

Outputting figure to mutsig2_images.part000000000035/CDK5RAP3.2_1577_10000_0.2384_0.4507_0.89.png
                gene_name: CDK5RAP3
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.90 

Current progress: 80 percent done.
CDKL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.503224e-02	ci left: 1.384471e-01	ci right 1.523602e-01	k: 1453	n:10000
KS ci ratio: 6.515890e-03	ci left: 9.698435e-01	ci right 9.762769e-01	k: 9732	n:10000
CDKL2   10000 perm   2 sec   (5616 perm/sec)   p_kst 9.732000e-01   p_cons 1.453000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000035/CDKL2.2_1522_10000_0.9732_0.1453_1.png
                gene_name: CDKL2
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
CDKL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.874988e-02	ci left: 6.407601e-01	ci right 6.595523e-01	k: 6502	n:10000
Cons ci ratio: 2.972988e-02	ci left: 6.252749e-01	ci right 6.442466e-01	k: 6348	n:10000
KS ci ratio: 5.176048e-02	ci left: 3.549581e-01	ci right 3.739210e-01	k: 3644	n:10000
CDKL4   10000 perm   1 sec   (6970 perm/sec)   p_kst 3.644000e-01   p_cons 6.348000e-01   p_joint 6.502000e-01

Outputting figure to mutsig2_images.part000000000035/CDKL4.2_980_10000_0.3644_0.6348_0.6502.png
                gene_name: CDKL4
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 84 percent done.
CDKN1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.243869e-02	ci left: 7.446266e-01	ci right 7.616257e-01	k: 7532	n:10000
Cons ci ratio: 1.460845e-02	ci left: 8.715273e-01	ci right 8.844516e-01	k: 8781	n:10000
KS ci ratio: 6.827759e-02	ci left: 2.393626e-01	ci right 2.563846e-01	k: 2478	n:10000
CDKN1A   10000 perm   1 sec   (7339 perm/sec)   p_kst 2.478000e-01   p_cons 8.781000e-01   p_joint 7.532000e-01

Outputting figure to mutsig2_images.part000000000035/CDKN1A.2_503_10000_0.2478_0.8781_0.7532.png
                gene_name: CDKN1A
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 86 percent done.
CDS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.167756e-02	ci left: 5.952389e-01	ci right 6.145000e-01	k: 6049	n:10000
Cons ci ratio: 3.703552e-02	ci left: 5.184588e-01	ci right 5.381247e-01	k: 5283	n:10000
KS ci ratio: 3.483445e-02	ci left: 5.489020e-01	ci right 5.684638e-01	k: 5587	n:10000
CDS1   10000 perm   2 sec   (6069 perm/sec)   p_kst 5.587000e-01   p_cons 5.283000e-01   p_joint 6.049000e-01

Outputting figure to mutsig2_images.part000000000035/CDS1.2_1438_10000_0.5587_0.5283_0.6049.png
                gene_name: CDS1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.61 

Current progress: 89 percent done.
CEACAM20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.849500e-02	ci left: 4.991503e-01	ci right 5.188444e-01	k: 5090	n:10000
Cons ci ratio: 1.367182e-02	ci left: 8.853423e-01	ci right 8.976286e-01	k: 8916	n:10000
KS ci ratio: 1.858267e-01	ci left: 3.863000e-02	ci right 4.663920e-02	k: 425	n:10000
CEACAM20   10000 perm   2 sec   (5939 perm/sec)   p_kst 4.250000e-02   p_cons 8.916000e-01   p_joint 5.090000e-01

Joint ci ratio: 1.185639e-02	ci left: 8.402638e-01	ci right 8.503356e-01	k: 16907	n:20000
Cons ci ratio: 1.057796e-02	ci left: 8.682045e-01	ci right 8.774868e-01	k: 17458	n:20000
KS ci ratio: 1.338834e-01	ci left: 3.834219e-02	ci right 4.389223e-02	k: 821	n:20000
CEACAM20   20000 perm   4 sec   (5141 perm/sec)   p_kst 4.105000e-02   p_cons 8.729000e-01   p_joint 8.453500e-01

Joint ci ratio: 2.461226e-02	ci left: 4.524829e-01	ci right 4.637919e-01	k: 13744	n:30000
Cons ci ratio: 8.643086e-03	ci left: 8.689093e-01	ci right 8.764850e-01	k: 26182	n:30000
KS ci ratio: 1.091778e-01	ci left: 3.894635e-02	ci right 4.347638e-02	k: 1235	n:30000
CEACAM20   30000 perm   6 sec   (4895 perm/sec)   p_kst 4.116667e-02   p_cons 8.727333e-01   p_joint 4.581333e-01

Joint ci ratio: 1.942852e-02	ci left: 4.994626e-01	ci right 5.092868e-01	k: 20175	n:40000
Cons ci ratio: 7.451571e-03	ci left: 8.704303e-01	ci right 8.769654e-01	k: 34949	n:40000
KS ci ratio: 9.416439e-02	ci left: 3.956634e-02	ci right 4.350057e-02	k: 1660	n:40000
CEACAM20   40000 perm   8 sec   (4739 perm/sec)   p_kst 4.150000e-02   p_cons 8.737250e-01   p_joint 5.043750e-01

Outputting figure to mutsig2_images.part000000000035/CEACAM20.2_1840_40000_0.0415_0.87372_0.50438.png
                gene_name: CEACAM20
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.042 
        ci_ks_bounds_left: 0.040 
       ci_ks_bounds_right: 0.044 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.51 

Current progress: 91 percent done.
CEACAM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.065070e-02	ci left: 3.650016e-01	ci right 3.840715e-01	k: 3745	n:10000
Cons ci ratio: 9.699204e-02	ci left: 1.335486e-01	ci right 1.472617e-01	k: 1403	n:10000
KS ci ratio: 1.865273e-02	ci left: 8.076544e-01	ci right 8.229615e-01	k: 8154	n:10000
CEACAM3   10000 perm   1 sec   (6740 perm/sec)   p_kst 8.154000e-01   p_cons 1.403000e-01   p_joint 3.745000e-01

Outputting figure to mutsig2_images.part000000000035/CEACAM3.2_787_10000_0.8154_0.1403_0.3745.png
                gene_name: CEACAM3
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.38 

Current progress: 93 percent done.
CEACAM4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.432516e-02	ci left: 3.329974e-01	ci right 3.516945e-01	k: 3423	n:10000
Cons ci ratio: 3.359399e-02	ci left: 5.667444e-01	ci right 5.862110e-01	k: 5765	n:10000
KS ci ratio: 1.471006e-01	ci left: 6.140379e-02	ci right 7.125068e-02	k: 662	n:10000
CEACAM4   10000 perm   1 sec   (6712 perm/sec)   p_kst 6.620000e-02   p_cons 5.765000e-01   p_joint 3.423000e-01

Joint ci ratio: 4.271154e-02	ci left: 2.899766e-01	ci right 3.026827e-01	k: 5926	n:20000
Cons ci ratio: 2.375595e-02	ci left: 5.696164e-01	ci right 5.833614e-01	k: 11530	n:20000
KS ci ratio: 1.016964e-01	ci left: 6.562284e-02	ci right 7.270304e-02	k: 1382	n:20000
CEACAM4   20000 perm   3 sec   (5820 perm/sec)   p_kst 6.910000e-02   p_cons 5.765000e-01   p_joint 2.963000e-01

Joint ci ratio: 3.516737e-02	ci left: 2.876875e-01	ci right 2.980193e-01	k: 8785	n:30000
Cons ci ratio: 1.928999e-02	ci left: 5.735894e-01	ci right 5.847953e-01	k: 17376	n:30000
KS ci ratio: 8.240762e-02	ci left: 6.723595e-02	ci right 7.304763e-02	k: 2103	n:30000
CEACAM4   30000 perm   5 sec   (5513 perm/sec)   p_kst 7.010000e-02   p_cons 5.792000e-01   p_joint 2.928333e-01

Outputting figure to mutsig2_images.part000000000035/CEACAM4.2_763_30000_0.0701_0.5792_0.29283.png
                gene_name: CEACAM4
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.070 
        ci_ks_bounds_left: 0.067 
       ci_ks_bounds_right: 0.073 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 95 percent done.
CEACAM5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.264646e-02	ci left: 2.172413e-01	ci right 2.337190e-01	k: 2254	n:10000
Cons ci ratio: 5.580505e-02	ci left: 3.210824e-01	ci right 3.396165e-01	k: 3303	n:10000
KS ci ratio: 8.310267e-02	ci left: 1.743827e-01	ci right 1.896031e-01	k: 1819	n:10000
CEACAM5   10000 perm   2 sec   (5607 perm/sec)   p_kst 1.819000e-01   p_cons 3.303000e-01   p_joint 2.254000e-01

Outputting figure to mutsig2_images.part000000000035/CEACAM5.2_2145_10000_0.1819_0.3303_0.2254.png
                gene_name: CEACAM5
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 98 percent done.
CEACAM7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.242615e-02	ci left: 3.490931e-01	ci right 3.679893e-01	k: 3585	n:10000
KS ci ratio: 8.256589e-03	ci left: 9.534652e-01	ci right 9.614655e-01	k: 9576	n:10000
CEACAM7   10000 perm   2 sec   (6547 perm/sec)   p_kst 9.576000e-01   p_cons 3.585000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000035/CEACAM7.2_814_10000_0.9576_0.3585_1.png
                gene_name: CEACAM7
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000035
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 35 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1704>
Subject: Job 8003955: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1704>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000036> was used as the working directory.
Started at Sun Nov 11 15:04:41 2012
Results reported at Sun Nov 11 15:14:10 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000036.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000036.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 36  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000036.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    606.22 sec.
    Max Memory :      4651 MB
    Max Swap   :      7073 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
36
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 36
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 36: processing genes 3167 - 3257
Calculating significance of each gene.
Using projection method.
3167	CEBPZ	9.334401e-01
3168	CECR1	7.230329e-01
3169	CECR2	4.136282e-01
3170	CECR5	1.926133e-01
3171	CECR6	1
3172	CEL	1
3173	CELA1	4.803073e-01
3174	CELA2A	1.878156e-01
3175	CELA2B	5.619289e-01
3176	CELA3A	3.526491e-01
3177	CELA3B	1
3178	CELF1	4.078137e-01
3179	CELF2	1
3180	CELF3	8.104211e-01
3181	CELF4	3.971851e-01
3182	CELF5	1
3183	CELF6	1.301893e-01
3184	CELSR1	9.345440e-01
3185	CELSR2	9.999980e-01
3186	CELSR3	9.999765e-01
3187	CEMP1	1
3188	CEND1	1
3189	CENPA	3.656989e-01
3190	CENPB	4.041867e-01
3191	CENPBD1	1
3192	CENPC1	6.820397e-01
3193	CENPE	9.806465e-01
3194	CENPF	9.405654e-01
3195	CENPH	5.564946e-01
3196	CENPI	2.165010e-01
3197	CENPJ	9.360319e-01
3198	CENPK	1
3199	CENPL	1
3200	CENPM	1
3201	CENPN	6.358911e-01
3202	CENPO	1
3203	CENPP	1.496801e-02
3204	CENPQ	2.483506e-01
3205	CENPT	8.290053e-01
3206	CENPV	1
3207	CENPW	2.727998e-01
3208	CEP110	1
3209	CEP120	6.930295e-01
3210	CEP135	1
3211	CEP152	9.273888e-01
3212	CEP164	9.933022e-01
3213	CEP170	6.518850e-01
3214	CEP192	8.075412e-01
3215	CEP250	9.999726e-01
3216	CEP290	4.729371e-01
3217	CEP350	9.997831e-01
3218	CEP55	7.475941e-01
3219	CEP57	1
3220	CEP63	1
3221	CEP68	7.135556e-01
3222	CEP70	9.042979e-01
3223	CEP72	6.183717e-01
3224	CEP76	7.747082e-01
3225	CEP78	5.419732e-01
3226	CEP97	3.450024e-01
3227	CEPT1	1
3228	CER1	2.725014e-01
3229	CERCAM	6.476832e-01
3230	CERK	7.083443e-03
3231	CERKL	1.058033e-02
3232	CES1	5.428171e-01
3233	CES2	8.523124e-01
3234	CES3	9.145873e-01
3235	CES7	1
3236	CES8	3.379405e-01
3237	CETN1	7.754201e-03
3238	CETN2	1
3239	CETN3	1
3240	CETP	1
3241	CFB	1
3242	CFD	1
3243	CFDP1	1
3244	CFH	4.408981e-01
3245	CFHR1	2.877919e-01
3246	CFHR2	2.113382e-02
3247	CFHR3	2.820555e-01
3248	CFHR4	7.180217e-07
3249	CFHR5	4.521932e-01
3250	CFI	3.323481e-01
3251	CFL1	1.092826e-01
3252	CFL2	3.533168e-01
3253	CFLAR	8.188915e-01
3254	CFP	1
3255	CFTR	4.201602e-01
3256	CGA	8.196360e-02
3257	CGB	1
Done

Running MutSig 2:
Scatter job 36: processing genes 3167 - 3257
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CEP350
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.044849e-02	ci left: 7.779303e-01	ci right 7.941028e-01	k: 7861	n:10000
Cons ci ratio: 1.633357e-02	ci left: 8.449897e-01	ci right 8.590046e-01	k: 8521	n:10000
KS ci ratio: 2.729154e-02	ci left: 6.642096e-01	ci right 6.826893e-01	k: 6735	n:10000
CEP350   10000 perm   3 sec   (2982 perm/sec)   p_kst 6.735000e-01   p_cons 8.521000e-01   p_joint 7.861000e-01

Outputting figure to mutsig2_images.part000000000036/CEP350.13_9502_10000_0.6735_0.8521_0.7861.png
                gene_name: CEP350
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.79 

Current progress: 2 percent done.
CELSR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.732758e-02	ci left: 3.971502e-01	ci right 4.165041e-01	k: 4068	n:10000
Cons ci ratio: 2.725432e-02	ci left: 6.648137e-01	ci right 6.832848e-01	k: 6741	n:10000
KS ci ratio: 6.103901e-02	ci left: 2.830009e-01	ci right 3.009204e-01	k: 2919	n:10000
CELSR1   10000 perm   3 sec   (3635 perm/sec)   p_kst 2.919000e-01   p_cons 6.741000e-01   p_joint 4.068000e-01

Outputting figure to mutsig2_images.part000000000036/CELSR1.11_9185_10000_0.2919_0.6741_0.4068.png
                gene_name: CELSR1
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 4 percent done.
CELSR3
Processing conservation and coverage...
99% 
Processing mutations... 
Skipping 3 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.671727e-02	ci left: 5.227627e-01	ci right 5.424183e-01	k: 5326	n:10000
Cons ci ratio: 4.241384e-02	ci left: 4.507933e-01	ci right 4.704296e-01	k: 4606	n:10000
KS ci ratio: 6.303106e-02	ci left: 2.700268e-01	ci right 2.877022e-01	k: 2788	n:10000
CELSR3   10000 perm   3 sec   (3325 perm/sec)   p_kst 2.788000e-01   p_cons 4.606000e-01   p_joint 5.326000e-01

Outputting figure to mutsig2_images.part000000000036/CELSR3.7_10079_10000_0.2788_0.4606_0.5326.png
                gene_name: CELSR3
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 6 percent done.
CENPE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.717997e-02	ci left: 8.315462e-01	ci right 8.460558e-01	k: 8389	n:10000
KS ci ratio: 1.165822e-02	ci left: 9.132737e-01	ci right 9.240809e-01	k: 9188	n:10000
CENPE   10000 perm   3 sec   (3707 perm/sec)   p_kst 9.188000e-01   p_cons 8.389000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000036/CENPE.10_8302_10000_0.9188_0.8389_1.png
                gene_name: CENPE
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 8 percent done.
CEP135
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.747619e-02	ci left: 5.125547e-01	ci right 5.322323e-01	k: 5224	n:10000
Cons ci ratio: 9.258663e-02	ci left: 1.449173e-01	ci right 1.590860e-01	k: 1519	n:10000
KS ci ratio: 1.931867e-02	ci left: 7.966903e-01	ci right 8.123319e-01	k: 8046	n:10000
CEP135   10000 perm   2 sec   (4851 perm/sec)   p_kst 8.046000e-01   p_cons 1.519000e-01   p_joint 5.224000e-01

Outputting figure to mutsig2_images.part000000000036/CEP135.10_3519_10000_0.8046_0.1519_0.5224.png
                gene_name: CEP135
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 9 percent done.
CEP192
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.900521e-02	ci left: 3.805230e-01	ci right 3.997410e-01	k: 3901	n:10000
Cons ci ratio: 3.531729e-02	ci left: 5.420892e-01	ci right 5.616806e-01	k: 5519	n:10000
KS ci ratio: 6.251794e-02	ci left: 2.732942e-01	ci right 2.910328e-01	k: 2821	n:10000
CEP192   10000 perm   3 sec   (3621 perm/sec)   p_kst 2.821000e-01   p_cons 5.519000e-01   p_joint 3.901000e-01

Outputting figure to mutsig2_images.part000000000036/CEP192.10_7790_10000_0.2821_0.5519_0.3901.png
                gene_name: CEP192
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 11 percent done.
CFHR4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.378784e-02	ci left: 4.350274e-01	ci right 4.546048e-01	k: 4448	n:10000
Cons ci ratio: 5.250601e-02	ci left: 3.483974e-01	ci right 3.672855e-01	k: 3578	n:10000
KS ci ratio: 4.686983e-02	ci left: 4.018319e-01	ci right 4.212197e-01	k: 4115	n:10000
CFHR4   10000 perm   2 sec   (5210 perm/sec)   p_kst 4.115000e-01   p_cons 3.578000e-01   p_joint 4.448000e-01

Outputting figure to mutsig2_images.part000000000036/CFHR4.10_1020_10000_0.4115_0.3578_0.4448.png
                gene_name: CFHR4
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.45 

Current progress: 13 percent done.
CECR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.761474e-02	ci left: 6.589740e-01	ci right 6.775279e-01	k: 6683	n:10000
Cons ci ratio: 4.192217e-02	ci left: 4.565833e-01	ci right 4.762363e-01	k: 4664	n:10000
KS ci ratio: 3.607332e-02	ci left: 5.315730e-01	ci right 5.512029e-01	k: 5414	n:10000
CECR2   10000 perm   2 sec   (4523 perm/sec)   p_kst 5.414000e-01   p_cons 4.664000e-01   p_joint 6.683000e-01

Outputting figure to mutsig2_images.part000000000036/CECR2.9_4403_10000_0.5414_0.4664_0.6683.png
                gene_name: CECR2
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 15 percent done.
CEP290
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.775266e-02	ci left: 3.061982e-01	ci right 3.245095e-01	k: 3153	n:10000
Cons ci ratio: 8.375026e-02	ci left: 1.721207e-01	ci right 1.872663e-01	k: 1796	n:10000
KS ci ratio: 4.444986e-02	ci left: 4.276467e-01	ci right 4.471898e-01	k: 4374	n:10000
CEP290   10000 perm   3 sec   (3555 perm/sec)   p_kst 4.374000e-01   p_cons 1.796000e-01   p_joint 3.153000e-01

Outputting figure to mutsig2_images.part000000000036/CEP290.9_7652_10000_0.4374_0.1796_0.3153.png
                gene_name: CEP290
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 17 percent done.
CELSR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.550139e-01	ci left: 5.542402e-02	ci right 6.483425e-02	k: 600	n:10000
Cons ci ratio: 1.153030e-01	ci left: 9.759583e-02	ci right 1.096362e-01	k: 1035	n:10000
KS ci ratio: 1.343944e-01	ci left: 7.310807e-02	ci right 8.373906e-02	k: 783	n:10000
CELSR2   10000 perm   3 sec   (3732 perm/sec)   p_kst 7.830000e-02   p_cons 1.035000e-01   p_joint 6.000000e-02

Joint ci ratio: 1.013426e-01	ci left: 6.606220e-02	ci right 7.316354e-02	k: 1391	n:20000
Cons ci ratio: 8.224334e-02	ci left: 9.778957e-02	ci right 1.062265e-01	k: 2039	n:20000
KS ci ratio: 9.314475e-02	ci left: 7.754845e-02	ci right 8.517378e-02	k: 1626	n:20000
CELSR2   20000 perm   6 sec   (3448 perm/sec)   p_kst 8.130000e-02   p_cons 1.019500e-01   p_joint 6.955000e-02

Joint ci ratio: 8.106884e-02	ci left: 6.936152e-02	ci right 7.525496e-02	k: 2168	n:30000
Cons ci ratio: 6.692072e-02	ci left: 9.918830e-02	ci right 1.060889e-01	k: 3078	n:30000
KS ci ratio: 7.648872e-02	ci left: 7.741266e-02	ci right 8.360220e-02	k: 2414	n:30000
CELSR2   30000 perm   9 sec   (3361 perm/sec)   p_kst 8.046667e-02   p_cons 1.026000e-01   p_joint 7.226667e-02

Outputting figure to mutsig2_images.part000000000036/CELSR2.8_8908_30000_0.080467_0.1026_0.072267.png
                gene_name: CELSR2
               theta_stop: 0.081 
                    nperm: 30000 
                     p_ks: 0.080 
        ci_ks_bounds_left: 0.077 
       ci_ks_bounds_right: 0.084 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.099 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.072 
     ci_joint_bounds_left: 0.069 
    ci_joint_bounds_right: 0.075 

Current progress: 19 percent done.
CENPF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.486923e-02	ci left: 7.040227e-01	ci right 7.218531e-01	k: 7130	n:10000
Cons ci ratio: 5.815626e-02	ci left: 3.032226e-01	ci right 3.214868e-01	k: 3123	n:10000
KS ci ratio: 2.843462e-02	ci left: 6.457901e-01	ci right 6.645195e-01	k: 6552	n:10000
CENPF   10000 perm   3 sec   (3609 perm/sec)   p_kst 6.552000e-01   p_cons 3.123000e-01   p_joint 7.130000e-01

Outputting figure to mutsig2_images.part000000000036/CENPF.8_9421_10000_0.6552_0.3123_0.713.png
                gene_name: CENPF
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 21 percent done.
CEP152
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.351440e-01	ci left: 7.233299e-02	ci right 8.291462e-02	k: 775	n:10000
Cons ci ratio: 2.855121e-01	ci left: 1.585693e-02	ci right 2.122875e-02	k: 184	n:10000
KS ci ratio: 7.154130e-02	ci left: 2.225711e-01	ci right 2.391859e-01	k: 2308	n:10000
CEP152   10000 perm   2 sec   (4411 perm/sec)   p_kst 2.308000e-01   p_cons 1.840000e-02   p_joint 7.750000e-02

Joint ci ratio: 1.281378e-01	ci left: 4.182901e-02	ci right 4.760429e-02	k: 893	n:20000
Cons ci ratio: 2.117242e-01	ci left: 1.506432e-02	ci right 1.867810e-02	k: 336	n:20000
KS ci ratio: 5.007346e-02	ci left: 2.286420e-01	ci right 2.404352e-01	k: 4690	n:20000
CEP152   20000 perm   5 sec   (4039 perm/sec)   p_kst 2.345000e-01   p_cons 1.680000e-02   p_joint 4.465000e-02

Joint ci ratio: 1.078647e-01	ci left: 3.988782e-02	ci right 4.446804e-02	k: 1264	n:30000
Cons ci ratio: 1.726132e-01	ci left: 1.543977e-02	ci right 1.838819e-02	k: 506	n:30000
KS ci ratio: 4.127008e-02	ci left: 2.264057e-01	ci right 2.359798e-01	k: 6935	n:30000
CEP152   30000 perm   8 sec   (3897 perm/sec)   p_kst 2.311667e-01   p_cons 1.686667e-02   p_joint 4.213333e-02

Joint ci ratio: 8.201508e-02	ci left: 5.180501e-02	ci right 5.626002e-02	k: 2160	n:40000
Cons ci ratio: 1.405518e-01	ci left: 1.773286e-02	ci right 2.043760e-02	k: 762	n:40000
KS ci ratio: 3.567327e-02	ci left: 2.277214e-01	ci right 2.360175e-01	k: 9274	n:40000
CEP152   40000 perm   11 sec   (3805 perm/sec)   p_kst 2.318500e-01   p_cons 1.905000e-02   p_joint 5.400000e-02

Joint ci ratio: 7.280627e-02	ci left: 5.280136e-02	ci right 5.681052e-02	k: 2739	n:50000
Cons ci ratio: 1.273396e-01	ci left: 1.741439e-02	ci right 1.980197e-02	k: 929	n:50000
KS ci ratio: 3.177651e-02	ci left: 2.296184e-01	ci right 2.370526e-01	k: 11666	n:50000
CEP152   50000 perm   13 sec   (3727 perm/sec)   p_kst 2.333200e-01   p_cons 1.858000e-02   p_joint 5.478000e-02

Joint ci ratio: 6.446442e-02	ci left: 5.617560e-02	ci right 5.993395e-02	k: 3482	n:60000
Cons ci ratio: 1.155608e-01	ci left: 1.772824e-02	ci right 1.991866e-02	k: 1128	n:60000
KS ci ratio: 2.892891e-02	ci left: 2.309155e-01	ci right 2.377103e-01	k: 14058	n:60000
CEP152   60000 perm   16 sec   (3661 perm/sec)   p_kst 2.343000e-01   p_cons 1.880000e-02   p_joint 5.803333e-02

Joint ci ratio: 7.296468e-02	ci left: 3.815325e-02	ci right 4.105650e-02	k: 2771	n:70000
Cons ci ratio: 1.070785e-01	ci left: 1.777888e-02	ci right 1.980414e-02	k: 1314	n:70000
KS ci ratio: 2.703183e-02	ci left: 2.278818e-01	ci right 2.341405e-01	k: 16170	n:70000
CEP152   70000 perm   19 sec   (3598 perm/sec)   p_kst 2.310000e-01   p_cons 1.877143e-02   p_joint 3.958571e-02

Joint ci ratio: 7.151180e-02	ci left: 3.490396e-02	ci right 3.750481e-02	k: 2895	n:80000
Cons ci ratio: 9.941896e-02	ci left: 1.811395e-02	ci right 2.002115e-02	k: 1524	n:80000
KS ci ratio: 2.529589e-02	ci left: 2.279461e-01	ci right 2.337985e-01	k: 18469	n:80000
CEP152   80000 perm   23 sec   (3542 perm/sec)   p_kst 2.308625e-01   p_cons 1.905000e-02   p_joint 3.618750e-02

Outputting figure to mutsig2_images.part000000000036/CEP152.8_5065_80000_0.23086_0.01905_0.036187.png
                gene_name: CEP152
               theta_stop: 0.099 
                    nperm: 80000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.019 
      ci_cons_bounds_left: 0.018 
     ci_cons_bounds_right: 0.020 
                  p_joint: 0.036 
     ci_joint_bounds_left: 0.035 
    ci_joint_bounds_right: 0.038 

Current progress: 23 percent done.
CFHR5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.592875e-01	ci left: 5.253552e-02	ci right 6.172460e-02	k: 570	n:10000
Cons ci ratio: 2.159387e-01	ci left: 2.844783e-02	ci right 3.542834e-02	k: 318	n:10000
KS ci ratio: 9.212254e-02	ci left: 1.461923e-01	ci right 1.604103e-01	k: 1532	n:10000
CFHR5   10000 perm   2 sec   (4767 perm/sec)   p_kst 1.532000e-01   p_cons 3.180000e-02   p_joint 5.700000e-02

Joint ci ratio: 1.341389e-01	ci left: 3.819702e-02	ci right 4.373744e-02	k: 818	n:20000
Cons ci ratio: 1.460843e-01	ci left: 3.220637e-02	ci right 3.733005e-02	k: 694	n:20000
KS ci ratio: 6.511643e-02	ci left: 1.483819e-01	ci right 1.584191e-01	k: 3067	n:20000
CFHR5   20000 perm   5 sec   (4420 perm/sec)   p_kst 1.533500e-01   p_cons 3.470000e-02   p_joint 4.090000e-02

Joint ci ratio: 1.314246e-01	ci left: 2.690430e-02	ci right 3.072102e-02	k: 863	n:30000
Cons ci ratio: 1.193079e-01	ci left: 3.265748e-02	ci right 3.683325e-02	k: 1041	n:30000
KS ci ratio: 5.346297e-02	ci left: 1.478886e-01	ci right 1.560456e-01	k: 4558	n:30000
CFHR5   30000 perm   7 sec   (4281 perm/sec)   p_kst 1.519333e-01   p_cons 3.470000e-02   p_joint 2.876667e-02

Joint ci ratio: 7.834505e-02	ci left: 5.658780e-02	ci right 6.122649e-02	k: 2355	n:40000
Cons ci ratio: 1.030681e-01	ci left: 3.309843e-02	ci right 3.671950e-02	k: 1395	n:40000
KS ci ratio: 4.637541e-02	ci left: 1.480241e-01	ci right 1.550766e-01	k: 6061	n:40000
CFHR5   40000 perm   10 sec   (4188 perm/sec)   p_kst 1.515250e-01   p_cons 3.487500e-02   p_joint 5.887500e-02

Joint ci ratio: 8.524039e-02	ci left: 3.884762e-02	ci right 4.232598e-02	k: 2028	n:50000
Cons ci ratio: 9.673107e-02	ci left: 3.025969e-02	ci right 3.335498e-02	k: 1589	n:50000
KS ci ratio: 4.156843e-02	ci left: 1.478521e-01	ci right 1.541485e-01	k: 7549	n:50000
CFHR5   50000 perm   12 sec   (4127 perm/sec)   p_kst 1.509800e-01   p_cons 3.178000e-02   p_joint 4.056000e-02

Outputting figure to mutsig2_images.part000000000036/CFHR5.8_1750_50000_0.15098_0.03178_0.04056.png
                gene_name: CFHR5
               theta_stop: 0.097 
                    nperm: 50000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.032 
      ci_cons_bounds_left: 0.030 
     ci_cons_bounds_right: 0.033 
                  p_joint: 0.041 
     ci_joint_bounds_left: 0.039 
    ci_joint_bounds_right: 0.042 

Current progress: 25 percent done.
CFTR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.968641e-02	ci left: 7.906032e-01	ci right 8.064225e-01	k: 7986	n:10000
Cons ci ratio: 2.036337e-02	ci left: 7.793491e-01	ci right 7.954831e-01	k: 7875	n:10000
KS ci ratio: 3.067289e-02	ci left: 6.106037e-01	ci right 6.297263e-01	k: 6202	n:10000
CFTR   10000 perm   2 sec   (4477 perm/sec)   p_kst 6.202000e-01   p_cons 7.875000e-01   p_joint 7.986000e-01

Outputting figure to mutsig2_images.part000000000036/CFTR.8_4551_10000_0.6202_0.7875_0.7986.png
                gene_name: CFTR
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 26 percent done.
CERKL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.359736e-02	ci left: 3.390568e-01	ci right 3.578316e-01	k: 3484	n:10000
Cons ci ratio: 6.080366e-02	ci left: 2.845862e-01	ci right 3.025342e-01	k: 2935	n:10000
KS ci ratio: 6.888722e-02	ci left: 2.361016e-01	ci right 2.530474e-01	k: 2445	n:10000
CERKL   10000 perm   2 sec   (5297 perm/sec)   p_kst 2.445000e-01   p_cons 2.935000e-01   p_joint 3.484000e-01

Outputting figure to mutsig2_images.part000000000036/CERKL.7_1733_10000_0.2445_0.2935_0.3484.png
                gene_name: CERKL
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 28 percent done.
CFH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.883840e-02	ci left: 6.393519e-01	ci right 6.581613e-01	k: 6488	n:10000
Cons ci ratio: 2.626723e-02	ci left: 6.809317e-01	ci right 6.991575e-01	k: 6901	n:10000
KS ci ratio: 4.673464e-02	ci left: 4.032266e-01	ci right 4.226242e-01	k: 4129	n:10000
CFH   10000 perm   2 sec   (4901 perm/sec)   p_kst 4.129000e-01   p_cons 6.901000e-01   p_joint 6.488000e-01

Outputting figure to mutsig2_images.part000000000036/CFH.7_3802_10000_0.4129_0.6901_0.6488.png
                gene_name: CFH
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 30 percent done.
CEP164
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.661620e-02	ci left: 2.485560e-01	ci right 2.657857e-01	k: 2571	n:10000
Cons ci ratio: 1.721807e-02	ci left: 8.309356e-01	ci right 8.454668e-01	k: 8383	n:10000
KS ci ratio: 1.072191e-01	ci left: 1.115436e-01	ci right 1.242799e-01	k: 1178	n:10000
CEP164   10000 perm   2 sec   (4500 perm/sec)   p_kst 1.178000e-01   p_cons 8.383000e-01   p_joint 2.571000e-01

Joint ci ratio: 4.077128e-02	ci left: 3.096086e-01	ci right 3.225449e-01	k: 6321	n:20000
Cons ci ratio: 1.208000e-02	ci left: 8.352499e-01	ci right 8.454509e-01	k: 16808	n:20000
KS ci ratio: 7.629437e-02	ci left: 1.121338e-01	ci right 1.210780e-01	k: 2331	n:20000
CEP164   20000 perm   5 sec   (4120 perm/sec)   p_kst 1.165500e-01   p_cons 8.404000e-01   p_joint 3.160500e-01

Outputting figure to mutsig2_images.part000000000036/CEP164.6_4507_20000_0.11655_0.8404_0.31605.png
                gene_name: CEP164
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 32 percent done.
CEP170
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.732256e-02	ci left: 6.637061e-01	ci right 6.821931e-01	k: 6730	n:10000
Cons ci ratio: 3.817613e-03	ci left: 9.886188e-01	ci right 9.924873e-01	k: 9907	n:10000
KS ci ratio: 4.009799e-02	ci left: 4.787572e-01	ci right 4.984494e-01	k: 4886	n:10000
CEP170   10000 perm   2 sec   (4857 perm/sec)   p_kst 4.886000e-01   p_cons 9.907000e-01   p_joint 6.730000e-01

Outputting figure to mutsig2_images.part000000000036/CEP170.6_4861_10000_0.4886_0.9907_0.673.png
                gene_name: CEP170
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 34 percent done.
CERK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.672870e-02	ci left: 6.733749e-01	ci right 6.917187e-01	k: 6826	n:10000
KS ci ratio: 2.419009e-02	ci left: 7.153262e-01	ci right 7.329431e-01	k: 7242	n:10000
CERK   10000 perm   2 sec   (5173 perm/sec)   p_kst 7.242000e-01   p_cons 6.826000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000036/CERK.6_1666_10000_0.7242_0.6826_1.png
                gene_name: CERK
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 36 percent done.
CENPI
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.626139e-03	ci left: 9.384828e-01	ci right 9.476569e-01	k: 9432	n:10000
Cons ci ratio: 1.794294e-02	ci left: 8.192382e-01	ci right 8.341709e-01	k: 8268	n:10000
KS ci ratio: 2.047280e-02	ci left: 7.775249e-01	ci right 7.937083e-01	k: 7857	n:10000
CENPI   10000 perm   2 sec   (5440 perm/sec)   p_kst 7.857000e-01   p_cons 8.268000e-01   p_joint 9.432000e-01

Outputting figure to mutsig2_images.part000000000036/CENPI.5_2351_10000_0.7857_0.8268_0.9432.png
                gene_name: CENPI
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 38 percent done.
CECR5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.846095e-01	ci left: 4.932166e-03	ci right 8.165407e-03	k: 64	n:10000
Cons ci ratio: 2.055197e-01	ci left: 3.148396e-02	ci right 3.879009e-02	k: 350	n:10000
KS ci ratio: 4.160103e-01	ci left: 6.974044e-03	ci right 1.072050e-02	k: 87	n:10000
CECR5   10000 perm   2 sec   (6194 perm/sec)   p_kst 8.700000e-03   p_cons 3.500000e-02   p_joint 6.400000e-03

Joint ci ratio: 3.744341e-01	ci left: 4.431766e-03	ci right 6.515982e-03	k: 108	n:20000
Cons ci ratio: 1.442662e-01	ci left: 3.302649e-02	ci right 3.820965e-02	k: 711	n:20000
KS ci ratio: 3.048355e-01	ci left: 6.950867e-03	ci right 9.495224e-03	k: 163	n:20000
CECR5   20000 perm   4 sec   (5521 perm/sec)   p_kst 8.150000e-03   p_cons 3.555000e-02   p_joint 5.400000e-03

Joint ci ratio: 3.765164e-01	ci left: 2.923862e-03	ci right 4.308349e-03	k: 107	n:30000
Cons ci ratio: 1.183696e-01	ci left: 3.317548e-02	ci right 3.738181e-02	k: 1057	n:30000
KS ci ratio: 2.468834e-01	ci left: 7.304536e-03	ci right 9.392360e-03	k: 249	n:30000
CECR5   30000 perm   6 sec   (5267 perm/sec)   p_kst 8.300000e-03   p_cons 3.523333e-02   p_joint 3.566667e-03

Joint ci ratio: 3.486666e-01	ci left: 2.601872e-03	ci right 3.722182e-03	k: 125	n:40000
Cons ci ratio: 1.031447e-01	ci left: 3.304967e-02	ci right 3.666826e-02	k: 1393	n:40000
KS ci ratio: 2.086115e-01	ci left: 7.836928e-03	ci right 9.685449e-03	k: 349	n:40000
CECR5   40000 perm   8 sec   (5102 perm/sec)   p_kst 8.725000e-03   p_cons 3.482500e-02   p_joint 3.125000e-03

Joint ci ratio: 2.024831e-01	ci left: 6.686484e-03	ci right 8.211540e-03	k: 371	n:50000
Cons ci ratio: 9.232431e-02	ci left: 3.319107e-02	ci right 3.642323e-02	k: 1739	n:50000
KS ci ratio: 1.895613e-01	ci left: 7.675847e-03	ci right 9.301992e-03	k: 423	n:50000
CECR5   50000 perm   10 sec   (4883 perm/sec)   p_kst 8.460000e-03   p_cons 3.478000e-02   p_joint 7.420000e-03

Joint ci ratio: 1.567420e-01	ci left: 9.507549e-03	ci right 1.114034e-02	k: 618	n:60000
Cons ci ratio: 8.759437e-02	ci left: 3.088338e-02	ci right 3.372876e-02	k: 1937	n:60000
KS ci ratio: 1.758197e-01	ci left: 7.493942e-03	ci right 8.954226e-03	k: 492	n:60000
CECR5   60000 perm   13 sec   (4726 perm/sec)   p_kst 8.200000e-03   p_cons 3.228333e-02   p_joint 1.030000e-02

Joint ci ratio: 1.533962e-01	ci left: 8.533471e-03	ci right 9.964795e-03	k: 646	n:70000
Cons ci ratio: 8.128265e-02	ci left: 3.084852e-02	ci right 3.347616e-02	k: 2250	n:70000
KS ci ratio: 1.600188e-01	ci left: 7.819502e-03	ci right 9.193135e-03	k: 594	n:70000
CECR5   70000 perm   16 sec   (4510 perm/sec)   p_kst 8.485714e-03   p_cons 3.214286e-02   p_joint 9.228571e-03

Joint ci ratio: 1.579785e-01	ci left: 7.033877e-03	ci right 8.252237e-03	k: 610	n:80000
Cons ci ratio: 7.812153e-02	ci left: 2.931921e-02	ci right 3.171500e-02	k: 2440	n:80000
KS ci ratio: 1.493521e-01	ci left: 7.899547e-03	ci right 9.186475e-03	k: 682	n:80000
CECR5   80000 perm   18 sec   (4407 perm/sec)   p_kst 8.525000e-03   p_cons 3.050000e-02   p_joint 7.625000e-03

Joint ci ratio: 1.705822e-01	ci left: 5.335595e-03	ci right 6.341102e-03	k: 524	n:90000
Cons ci ratio: 7.109219e-02	ci left: 3.151483e-02	ci right 3.384875e-02	k: 2940	n:90000
KS ci ratio: 1.419682e-01	ci left: 7.803353e-03	ci right 9.006433e-03	k: 755	n:90000
CECR5   90000 perm   21 sec   (4353 perm/sec)   p_kst 8.388889e-03   p_cons 3.266667e-02   p_joint 5.822222e-03

Joint ci ratio: 1.564344e-01	ci left: 5.751686e-03	ci right 6.737283e-03	k: 623	n:100000
Cons ci ratio: 6.738836e-02	ci left: 3.162594e-02	ci right 3.384127e-02	k: 3272	n:100000
KS ci ratio: 1.340407e-01	ci left: 7.911300e-03	ci right 9.057483e-03	k: 847	n:100000
CECR5   100000 perm   23 sec   (4298 perm/sec)   p_kst 8.470000e-03   p_cons 3.272000e-02   p_joint 6.230000e-03

Joint ci ratio: 1.661242e-01	ci left: 4.617872e-03	ci right 5.463094e-03	k: 553	n:110000
Cons ci ratio: 6.401647e-02	ci left: 3.190738e-02	ci right 3.402643e-02	k: 3625	n:110000
KS ci ratio: 1.273766e-01	ci left: 7.992344e-03	ci right 9.088350e-03	k: 938	n:110000
CECR5   110000 perm   26 sec   (4228 perm/sec)   p_kst 8.527273e-03   p_cons 3.295455e-02   p_joint 5.027273e-03

Joint ci ratio: 1.681529e-01	ci left: 4.129159e-03	ci right 4.895090e-03	k: 540	n:120000
Cons ci ratio: 6.117636e-02	ci left: 3.207031e-02	ci right 3.410234e-02	k: 3969	n:120000
KS ci ratio: 1.222772e-01	ci left: 7.972164e-03	ci right 9.018464e-03	k: 1018	n:120000
CECR5   120000 perm   29 sec   (4161 perm/sec)   p_kst 8.483333e-03   p_cons 3.307500e-02   p_joint 4.500000e-03

Joint ci ratio: 1.270528e-01	ci left: 6.807171e-03	ci right 7.738087e-03	k: 944	n:130000
Cons ci ratio: 5.872578e-02	ci left: 3.216443e-02	ci right 3.411801e-02	k: 4307	n:130000
KS ci ratio: 1.176909e-01	ci left: 7.963297e-03	ci right 8.966506e-03	k: 1099	n:130000
CECR5   130000 perm   32 sec   (4103 perm/sec)   p_kst 8.453846e-03   p_cons 3.313077e-02   p_joint 7.261538e-03

Joint ci ratio: 1.247803e-01	ci left: 6.563018e-03	ci right 7.443301e-03	k: 979	n:140000
Cons ci ratio: 5.649762e-02	ci left: 3.230286e-02	ci right 3.418796e-02	k: 4653	n:140000
KS ci ratio: 1.142205e-01	ci left: 7.866094e-03	ci right 8.825864e-03	k: 1167	n:140000
CECR5   140000 perm   35 sec   (4049 perm/sec)   p_kst 8.335714e-03   p_cons 3.323571e-02   p_joint 6.992857e-03

Joint ci ratio: 1.205493e-01	ci left: 6.577835e-03	ci right 7.428056e-03	k: 1049	n:150000
Cons ci ratio: 5.450522e-02	ci left: 3.242404e-02	ci right 3.424739e-02	k: 4999	n:150000
KS ci ratio: 1.101006e-01	ci left: 7.918390e-03	ci right 8.847430e-03	k: 1256	n:150000
CECR5   150000 perm   38 sec   (3993 perm/sec)   p_kst 8.373333e-03   p_cons 3.332667e-02   p_joint 6.993333e-03

Joint ci ratio: 1.190448e-01	ci left: 6.330365e-03	ci right 7.137665e-03	k: 1076	n:160000
Cons ci ratio: 5.283256e-02	ci left: 3.238301e-02	ci right 3.414645e-02	k: 5321	n:160000
KS ci ratio: 1.063568e-01	ci left: 7.970777e-03	ci right 8.872173e-03	k: 1346	n:160000
CECR5   160000 perm   41 sec   (3933 perm/sec)   p_kst 8.412500e-03   p_cons 3.325625e-02   p_joint 6.725000e-03

Joint ci ratio: 1.126185e-01	ci left: 6.677771e-03	ci right 7.480354e-03	k: 1202	n:170000
Cons ci ratio: 5.128151e-02	ci left: 3.237661e-02	ci right 3.408641e-02	k: 5648	n:170000
KS ci ratio: 1.032244e-01	ci left: 7.977348e-03	ci right 8.851305e-03	k: 1429	n:170000
CECR5   170000 perm   44 sec   (3876 perm/sec)   p_kst 8.405882e-03   p_cons 3.322353e-02   p_joint 7.070588e-03

Joint ci ratio: 1.100460e-01	ci left: 6.614620e-03	ci right 7.390274e-03	k: 1259	n:180000
Cons ci ratio: 4.976913e-02	ci left: 3.248687e-02	ci right 3.415043e-02	k: 5996	n:180000
KS ci ratio: 1.002200e-01	ci left: 8.005205e-03	ci right 8.855185e-03	k: 1516	n:180000
CECR5   180000 perm   47 sec   (3821 perm/sec)   p_kst 8.422222e-03   p_cons 3.331111e-02   p_joint 6.994444e-03

Joint ci ratio: 1.122391e-01	ci left: 6.020769e-03	ci right 6.741784e-03	k: 1211	n:190000
Cons ci ratio: 4.841469e-02	ci left: 3.254456e-02	ci right 3.416446e-02	k: 6336	n:190000
KS ci ratio: 9.718885e-02	ci left: 8.076684e-03	ci right 8.906838e-03	k: 1612	n:190000
CECR5   190000 perm   50 sec   (3772 perm/sec)   p_kst 8.484211e-03   p_cons 3.334737e-02   p_joint 6.373684e-03

Joint ci ratio: 1.090873e-01	ci left: 6.064913e-03	ci right 6.769508e-03	k: 1282	n:200000
Cons ci ratio: 4.715053e-02	ci left: 3.261681e-02	ci right 3.419676e-02	k: 6680	n:200000
KS ci ratio: 9.486599e-02	ci left: 8.063241e-03	ci right 8.871103e-03	k: 1692	n:200000
CECR5   200000 perm   54 sec   (3724 perm/sec)   p_kst 8.460000e-03   p_cons 3.340000e-02   p_joint 6.410000e-03

Joint ci ratio: 1.076367e-01	ci left: 5.938236e-03	ci right 6.618358e-03	k: 1317	n:210000
Cons ci ratio: 4.590280e-02	ci left: 3.279098e-02	ci right 3.433622e-02	k: 7047	n:210000
KS ci ratio: 9.267574e-02	ci left: 8.055944e-03	ci right 8.843429e-03	k: 1773	n:210000
CECR5   210000 perm   57 sec   (3678 perm/sec)   p_kst 8.442857e-03   p_cons 3.355714e-02   p_joint 6.271429e-03

Joint ci ratio: 1.355623e-01	ci left: 3.529616e-03	ci right 4.047230e-03	k: 832	n:220000
Cons ci ratio: 4.479917e-02	ci left: 3.287787e-02	ci right 3.438899e-02	k: 7398	n:220000
KS ci ratio: 9.031191e-02	ci left: 8.107270e-03	ci right 8.878491e-03	k: 1867	n:220000
CECR5   220000 perm   61 sec   (3631 perm/sec)   p_kst 8.486364e-03   p_cons 3.362727e-02   p_joint 3.781818e-03

Joint ci ratio: 1.368993e-01	ci left: 3.308934e-03	ci right 3.799360e-03	k: 816	n:230000
Cons ci ratio: 4.374813e-02	ci left: 3.299203e-02	ci right 3.447192e-02	k: 7757	n:230000
KS ci ratio: 8.859966e-02	ci left: 8.065063e-03	ci right 8.816969e-03	k: 1940	n:230000
CECR5   230000 perm   64 sec   (3582 perm/sec)   p_kst 8.434783e-03   p_cons 3.372609e-02   p_joint 3.547826e-03

Joint ci ratio: 8.693771e-02	ci left: 8.034654e-03	ci right 8.768959e-03	k: 2015	n:240000
Cons ci ratio: 4.119659e-02	ci left: 3.560474e-02	ci right 3.710648e-02	k: 8724	n:240000
KS ci ratio: 8.667793e-02	ci left: 8.083577e-03	ci right 8.820035e-03	k: 2027	n:240000
CECR5   240000 perm   68 sec   (3539 perm/sec)   p_kst 8.445833e-03   p_cons 3.635000e-02   p_joint 8.395833e-03

Outputting figure to mutsig2_images.part000000000036/CECR5.4_1344_240000_0.0084458_0.03635_0.0083958.png
                gene_name: CECR5
               theta_stop: 0.087 
                    nperm: 240000 
                     p_ks: 0.0084 
        ci_ks_bounds_left: 0.0081 
       ci_ks_bounds_right: 0.0088 
                   p_cons: 0.036 
      ci_cons_bounds_left: 0.036 
     ci_cons_bounds_right: 0.037 
                  p_joint: 0.0084 
     ci_joint_bounds_left: 0.0080 
    ci_joint_bounds_right: 0.0088 

Current progress: 40 percent done.
CELF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.582365e-02	ci left: 2.531052e-01	ci right 2.704338e-01	k: 2617	n:10000
KS ci ratio: 2.538035e-02	ci left: 6.955495e-01	ci right 7.135312e-01	k: 7046	n:10000
CELF4   10000 perm   2 sec   (5747 perm/sec)   p_kst 7.046000e-01   p_cons 2.617000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000036/CELF4.4_1509_10000_0.7046_0.2617_1.png
                gene_name: CELF4
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 42 percent done.
CENPJ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.462809e-02	ci left: 3.305146e-01	ci right 3.491788e-01	k: 3398	n:10000
Cons ci ratio: 5.992136e-02	ci left: 2.906312e-01	ci right 3.086857e-01	k: 2996	n:10000
KS ci ratio: 6.382384e-02	ci left: 2.650773e-01	ci right 2.826547e-01	k: 2738	n:10000
CENPJ   10000 perm   2 sec   (5376 perm/sec)   p_kst 2.738000e-01   p_cons 2.996000e-01   p_joint 3.398000e-01

Outputting figure to mutsig2_images.part000000000036/CENPJ.4_4081_10000_0.2738_0.2996_0.3398.png
                gene_name: CENPJ
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 43 percent done.
CENPP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.930804e-02	ci left: 1.280657e-01	ci right 1.415478e-01	k: 1347	n:10000
Cons ci ratio: 4.949261e-02	ci left: 3.758456e-01	ci right 3.950212e-01	k: 3854	n:10000
KS ci ratio: 2.016804e-01	ci left: 3.271977e-02	ci right 4.015343e-02	k: 363	n:10000
CENPP   10000 perm   2 sec   (5917 perm/sec)   p_kst 3.630000e-02   p_cons 3.854000e-01   p_joint 1.347000e-01

Joint ci ratio: 7.315137e-02	ci left: 1.209384e-01	ci right 1.301708e-01	k: 2510	n:20000
Cons ci ratio: 3.515567e-02	ci left: 3.765542e-01	ci right 3.900797e-01	k: 7666	n:20000
KS ci ratio: 1.415071e-01	ci left: 3.432986e-02	ci right 3.960586e-02	k: 738	n:20000
CENPP   20000 perm   4 sec   (5317 perm/sec)   p_kst 3.690000e-02   p_cons 3.833000e-01   p_joint 1.255000e-01

Joint ci ratio: 6.901285e-02	ci left: 9.373909e-02	ci right 1.004725e-01	k: 2912	n:30000
Cons ci ratio: 2.886801e-02	ci left: 3.751341e-01	ci right 3.861557e-01	k: 11419	n:30000
KS ci ratio: 1.153520e-01	ci left: 3.492467e-02	ci right 3.923224e-02	k: 1111	n:30000
CENPP   30000 perm   6 sec   (5082 perm/sec)   p_kst 3.703333e-02   p_cons 3.806333e-01   p_joint 9.706667e-02

Joint ci ratio: 5.034273e-02	ci left: 1.283014e-01	ci right 1.349521e-01	k: 5264	n:40000
Cons ci ratio: 2.499069e-02	ci left: 3.760626e-01	ci right 3.856047e-01	k: 15233	n:40000
KS ci ratio: 9.804732e-02	ci left: 3.653794e-02	ci right 4.032944e-02	k: 1536	n:40000
CENPP   40000 perm   8 sec   (4910 perm/sec)   p_kst 3.840000e-02   p_cons 3.808250e-01   p_joint 1.316000e-01

Outputting figure to mutsig2_images.part000000000036/CENPP.4_899_40000_0.0384_0.38083_0.1316.png
                gene_name: CENPP
               theta_stop: 0.098 
                    nperm: 40000 
                     p_ks: 0.038 
        ci_ks_bounds_left: 0.037 
       ci_ks_bounds_right: 0.040 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 45 percent done.
CEP120
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.036773e-02	ci left: 6.153256e-01	ci right 6.344016e-01	k: 6249	n:10000
Cons ci ratio: 7.450460e-02	ci left: 2.086584e-01	ci right 2.249069e-01	k: 2167	n:10000
KS ci ratio: 1.450598e-02	ci left: 8.730609e-01	ci right 8.859171e-01	k: 8796	n:10000
CEP120   10000 perm   2 sec   (5500 perm/sec)   p_kst 8.796000e-01   p_cons 2.167000e-01   p_joint 6.249000e-01

Outputting figure to mutsig2_images.part000000000036/CEP120.4_3041_10000_0.8796_0.2167_0.6249.png
                gene_name: CEP120
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.63 

Current progress: 47 percent done.
CEP63
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.128802e-02	ci left: 6.011627e-01	ci right 6.203727e-01	k: 6108	n:10000
Cons ci ratio: 6.700192e-02	ci left: 2.463807e-01	ci right 2.635622e-01	k: 2549	n:10000
KS ci ratio: 3.611692e-02	ci left: 5.309722e-01	ci right 5.506041e-01	k: 5408	n:10000
CEP63   10000 perm   2 sec   (5522 perm/sec)   p_kst 5.408000e-01   p_cons 2.549000e-01   p_joint 6.108000e-01

Outputting figure to mutsig2_images.part000000000036/CEP63.4_2271_10000_0.5408_0.2549_0.6108.png
                gene_name: CEP63
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 49 percent done.
CEP97
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.069109e-01	ci left: 1.121295e-01	ci right 1.248936e-01	k: 1184	n:10000
Cons ci ratio: 1.409374e-01	ci left: 6.671876e-02	ci right 7.693236e-02	k: 717	n:10000
KS ci ratio: 7.472467e-02	ci left: 2.076722e-01	ci right 2.238937e-01	k: 2157	n:10000
CEP97   10000 perm   2 sec   (5448 perm/sec)   p_kst 2.157000e-01   p_cons 7.170000e-02   p_joint 1.184000e-01

Joint ci ratio: 7.552655e-02	ci left: 1.141990e-01	ci right 1.232122e-01	k: 2373	n:20000
Cons ci ratio: 1.012254e-01	ci left: 6.620866e-02	ci right 7.331704e-02	k: 1394	n:20000
KS ci ratio: 5.331173e-02	ci left: 2.070952e-01	ci right 2.184884e-01	k: 4255	n:20000
CEP97   20000 perm   4 sec   (4908 perm/sec)   p_kst 2.127500e-01   p_cons 6.970000e-02   p_joint 1.186500e-01

Joint ci ratio: 8.007826e-02	ci left: 7.099709e-02	ci right 7.695239e-02	k: 2218	n:30000
Cons ci ratio: 8.232350e-02	ci left: 6.736673e-02	ci right 7.318349e-02	k: 2107	n:30000
KS ci ratio: 4.366372e-02	ci left: 2.071218e-01	ci right 2.164007e-01	k: 6352	n:30000
CEP97   30000 perm   6 sec   (4696 perm/sec)   p_kst 2.117333e-01   p_cons 7.023333e-02   p_joint 7.393333e-02

Outputting figure to mutsig2_images.part000000000036/CEP97.4_2642_30000_0.21173_0.070233_0.073933.png
                gene_name: CEP97
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.070 
      ci_cons_bounds_left: 0.067 
     ci_cons_bounds_right: 0.073 
                  p_joint: 0.074 
     ci_joint_bounds_left: 0.071 
    ci_joint_bounds_right: 0.077 

Current progress: 51 percent done.
CETN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.193174e-02	ci left: 7.531230e-01	ci right 7.699244e-01	k: 7616	n:10000
Cons ci ratio: 5.886768e-02	ci left: 2.980661e-01	ci right 3.162464e-01	k: 3071	n:10000
KS ci ratio: 2.817083e-02	ci left: 6.500161e-01	ci right 6.686910e-01	k: 6594	n:10000
CETN1   10000 perm   1 sec   (7221 perm/sec)   p_kst 6.594000e-01   p_cons 3.071000e-01   p_joint 7.616000e-01

Outputting figure to mutsig2_images.part000000000036/CETN1.4_523_10000_0.6594_0.3071_0.7616.png
                gene_name: CETN1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 53 percent done.
CFHR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.696349e-02	ci left: 8.350072e-01	ci right 8.493928e-01	k: 8423	n:10000
KS ci ratio: 2.795794e-02	ci left: 6.534378e-01	ci right 6.720673e-01	k: 6628	n:10000
CFHR2   10000 perm   2 sec   (6185 perm/sec)   p_kst 6.628000e-01   p_cons 8.423000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000036/CFHR2.4_833_10000_0.6628_0.8423_1.png
                gene_name: CFHR2
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 55 percent done.
CENPB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.171070e-02	ci left: 5.947369e-01	ci right 6.140022e-01	k: 6044	n:10000
Cons ci ratio: 2.213094e-02	ci left: 7.497846e-01	ci right 7.666647e-01	k: 7583	n:10000
KS ci ratio: 7.256337e-02	ci left: 2.176360e-01	ci right 2.341240e-01	k: 2258	n:10000
CENPB   10000 perm   2 sec   (5853 perm/sec)   p_kst 2.258000e-01   p_cons 7.583000e-01   p_joint 6.044000e-01

Outputting figure to mutsig2_images.part000000000036/CENPB.3_1804_10000_0.2258_0.7583_0.6044.png
                gene_name: CENPB
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 57 percent done.
CEP68
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.340926e-02	ci left: 2.676508e-01	ci right 2.852796e-01	k: 2764	n:10000
Cons ci ratio: 1.643706e-02	ci left: 8.433592e-01	ci right 8.574360e-01	k: 8505	n:10000
KS ci ratio: 1.084215e-01	ci left: 1.092981e-01	ci right 1.219268e-01	k: 1155	n:10000
CEP68   10000 perm   2 sec   (5857 perm/sec)   p_kst 1.155000e-01   p_cons 8.505000e-01   p_joint 2.764000e-01

Joint ci ratio: 4.423985e-02	ci left: 2.756219e-01	ci right 2.881416e-01	k: 5637	n:20000
Cons ci ratio: 1.164258e-02	ci left: 8.450262e-01	ci right 8.549718e-01	k: 17001	n:20000
KS ci ratio: 7.685506e-02	ci left: 1.106590e-01	ci right 1.195532e-01	k: 2301	n:20000
CEP68   20000 perm   4 sec   (5239 perm/sec)   p_kst 1.150500e-01   p_cons 8.500500e-01   p_joint 2.818500e-01

Outputting figure to mutsig2_images.part000000000036/CEP68.3_2294_20000_0.11505_0.85005_0.28185.png
                gene_name: CEP68
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 58 percent done.
CFI
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.808310e-02	ci left: 6.514250e-01	ci right 6.700813e-01	k: 6608	n:10000
Cons ci ratio: 4.432366e-02	ci left: 4.290429e-01	ci right 4.485928e-01	k: 4388	n:10000
KS ci ratio: 2.985179e-02	ci left: 6.233651e-01	ci right 6.423575e-01	k: 6329	n:10000
CFI   10000 perm   2 sec   (6125 perm/sec)   p_kst 6.329000e-01   p_cons 4.388000e-01   p_joint 6.608000e-01

Outputting figure to mutsig2_images.part000000000036/CFI.3_1804_10000_0.6329_0.4388_0.6608.png
                gene_name: CFI
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 60 percent done.
CEBPZ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.744606e-02	ci left: 8.272725e-01	ci right 8.419321e-01	k: 8347	n:10000
KS ci ratio: 3.571168e-02	ci left: 5.365801e-01	ci right 5.561928e-01	k: 5464	n:10000
CEBPZ   10000 perm   2 sec   (5595 perm/sec)   p_kst 5.464000e-01   p_cons 8.347000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000036/CEBPZ.2_3229_10000_0.5464_0.8347_1.png
                gene_name: CEBPZ
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
CELA2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.525308e-02	ci left: 5.429908e-01	ci right 5.625785e-01	k: 5528	n:10000
Cons ci ratio: 1.315918e-01	ci left: 7.611299e-02	ci right 8.693227e-02	k: 814	n:10000
KS ci ratio: 2.807683e-02	ci left: 6.515256e-01	ci right 6.701806e-01	k: 6609	n:10000
CELA2A   10000 perm   1 sec   (6826 perm/sec)   p_kst 6.609000e-01   p_cons 8.140000e-02   p_joint 5.528000e-01

Joint ci ratio: 6.592444e-03	ci left: 9.432908e-01	ci right 9.495786e-01	k: 18930	n:20000
Cons ci ratio: 9.425271e-02	ci left: 7.583612e-02	ci right 8.338663e-02	k: 1591	n:20000
KS ci ratio: 1.968605e-02	ci left: 6.581086e-01	ci right 6.712435e-01	k: 13294	n:20000
CELA2A   20000 perm   3 sec   (6036 perm/sec)   p_kst 6.647000e-01   p_cons 7.955000e-02   p_joint 9.465000e-01

Outputting figure to mutsig2_images.part000000000036/CELA2A.2_842_20000_0.6647_0.07955_0.9465.png
                gene_name: CELA2A
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.080 
      ci_cons_bounds_left: 0.076 
     ci_cons_bounds_right: 0.083 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 64 percent done.
CELA3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.721990e-02	ci left: 3.982459e-01	ci right 4.176078e-01	k: 4079	n:10000
Cons ci ratio: 9.537790e-02	ci left: 1.375651e-01	ci right 1.514427e-01	k: 1444	n:10000
KS ci ratio: 8.134096e-03	ci left: 9.547186e-01	ci right 9.626113e-01	k: 9588	n:10000
CELA3A   10000 perm   1 sec   (7132 perm/sec)   p_kst 9.588000e-01   p_cons 1.444000e-01   p_joint 4.079000e-01

Outputting figure to mutsig2_images.part000000000036/CELA3A.2_845_10000_0.9588_0.1444_0.4079.png
                gene_name: CELA3A
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 66 percent done.
CELF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.954840e-02	ci left: 4.856531e-01	ci right 5.053495e-01	k: 4955	n:10000
KS ci ratio: 1.505507e-02	ci left: 8.647828e-01	ci right 8.780001e-01	k: 8715	n:10000
CELF1   10000 perm   2 sec   (6575 perm/sec)   p_kst 8.715000e-01   p_cons 4.955000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000036/CELF1.2_1597_10000_0.8715_0.4955_1.png
                gene_name: CELF1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
CELF6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.524428e-02	ci left: 4.189723e-01	ci right 4.384693e-01	k: 4287	n:10000
Cons ci ratio: 2.611998e-02	ci left: 6.833505e-01	ci right 7.015373e-01	k: 6925	n:10000
KS ci ratio: 1.137775e-01	ci left: 1.000319e-01	ci right 1.121987e-01	k: 1060	n:10000
CELF6   10000 perm   2 sec   (6432 perm/sec)   p_kst 1.060000e-01   p_cons 6.925000e-01   p_joint 4.287000e-01

Joint ci ratio: 1.532874e-02	ci left: 7.598673e-01	ci right 7.716553e-01	k: 15316	n:20000
Cons ci ratio: 1.856128e-02	ci left: 6.839402e-01	ci right 6.968044e-01	k: 13808	n:20000
KS ci ratio: 7.953495e-02	ci left: 1.039762e-01	ci right 1.126380e-01	k: 2165	n:20000
CELF6   20000 perm   3 sec   (5722 perm/sec)   p_kst 1.082500e-01   p_cons 6.904000e-01   p_joint 7.658000e-01

Outputting figure to mutsig2_images.part000000000036/CELF6.2_1494_20000_0.10825_0.6904_0.7658.png
                gene_name: CELF6
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 70 percent done.
CENPC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.458026e-01	ci left: 2.174701e-02	ci right 2.793403e-02	k: 247	n:10000
Cons ci ratio: 2.236599e-01	ci left: 2.646035e-02	ci right 3.321723e-02	k: 297	n:10000
KS ci ratio: 9.825754e-02	ci left: 1.305129e-01	ci right 1.440991e-01	k: 1372	n:10000
CENPC1   10000 perm   2 sec   (5979 perm/sec)   p_kst 1.372000e-01   p_cons 2.970000e-02   p_joint 2.470000e-02

Joint ci ratio: 2.364985e-01	ci left: 1.194666e-02	ci right 1.519704e-02	k: 270	n:20000
Cons ci ratio: 1.550971e-01	ci left: 2.854513e-02	ci right 3.339250e-02	k: 618	n:20000
KS ci ratio: 6.865601e-02	ci left: 1.353172e-01	ci right 1.449877e-01	k: 2802	n:20000
CENPC1   20000 perm   4 sec   (5338 perm/sec)   p_kst 1.401000e-01   p_cons 3.090000e-02   p_joint 1.350000e-02

Joint ci ratio: 1.582878e-01	ci left: 1.844573e-02	ci right 2.164817e-02	k: 600	n:30000
Cons ci ratio: 1.421147e-01	ci left: 2.297315e-02	ci right 2.651970e-02	k: 741	n:30000
KS ci ratio: 5.617820e-02	ci left: 1.356966e-01	ci right 1.435733e-01	k: 4188	n:30000
CENPC1   30000 perm   6 sec   (5062 perm/sec)   p_kst 1.396000e-01   p_cons 2.470000e-02   p_joint 2.000000e-02

Joint ci ratio: 1.183934e-01	ci left: 2.509359e-02	ci right 2.827562e-02	k: 1066	n:40000
Cons ci ratio: 1.213467e-01	ci left: 2.388016e-02	ci right 2.698926e-02	k: 1016	n:40000
KS ci ratio: 4.855761e-02	ci left: 1.366875e-01	ci right 1.435148e-01	k: 5603	n:40000
CENPC1   40000 perm   8 sec   (4907 perm/sec)   p_kst 1.400750e-01   p_cons 2.540000e-02   p_joint 2.665000e-02

Joint ci ratio: 1.079817e-01	ci left: 2.429164e-02	ci right 2.708379e-02	k: 1283	n:50000
Cons ci ratio: 1.089434e-01	ci left: 2.386329e-02	ci right 2.663220e-02	k: 1261	n:50000
KS ci ratio: 4.346019e-02	ci left: 1.368903e-01	ci right 1.429916e-01	k: 6996	n:50000
CENPC1   50000 perm   10 sec   (4774 perm/sec)   p_kst 1.399200e-01   p_cons 2.522000e-02   p_joint 2.566000e-02

Joint ci ratio: 9.718413e-02	ci left: 2.511552e-02	ci right 2.769723e-02	k: 1583	n:60000
Cons ci ratio: 9.993999e-02	ci left: 2.374919e-02	ci right 2.626371e-02	k: 1499	n:60000
KS ci ratio: 3.969668e-02	ci left: 1.370178e-01	ci right 1.425837e-01	k: 8387	n:60000
CENPC1   60000 perm   13 sec   (4676 perm/sec)   p_kst 1.397833e-01   p_cons 2.498333e-02   p_joint 2.638333e-02

Outputting figure to mutsig2_images.part000000000036/CENPC1.2_2908_60000_0.13978_0.024983_0.026383.png
                gene_name: CENPC1
               theta_stop: 0.100 
                    nperm: 60000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.025 
      ci_cons_bounds_left: 0.024 
     ci_cons_bounds_right: 0.026 
                  p_joint: 0.026 
     ci_joint_bounds_left: 0.025 
    ci_joint_bounds_right: 0.028 

Current progress: 72 percent done.
CENPQ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.706602e-03	ci left: 9.375495e-01	ci right 9.467908e-01	k: 9423	n:10000
KS ci ratio: 1.788029e-02	ci left: 8.202549e-01	ci right 8.351537e-01	k: 8278	n:10000
CENPQ   10000 perm   1 sec   (6850 perm/sec)   p_kst 8.278000e-01   p_cons 9.423000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000036/CENPQ.2_839_10000_0.8278_0.9423_1.png
                gene_name: CENPQ
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 74 percent done.
CEP110
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.685670e-01	ci left: 4.696137e-02	ci right 5.570235e-02	k: 512	n:10000
Cons ci ratio: 2.305278e-01	ci left: 2.485465e-02	ci right 3.142409e-02	k: 280	n:10000
KS ci ratio: 1.793042e-02	ci left: 8.194416e-01	ci right 8.343675e-01	k: 8270	n:10000
CEP110   10000 perm   2 sec   (4566 perm/sec)   p_kst 8.270000e-01   p_cons 2.800000e-02   p_joint 5.120000e-02

Joint ci ratio: 1.446882e-01	ci left: 3.283349e-02	ci right 3.800272e-02	k: 707	n:20000
Cons ci ratio: 1.869915e-01	ci left: 1.948692e-02	ci right 2.355385e-02	k: 429	n:20000
KS ci ratio: 1.272471e-02	ci left: 8.206230e-01	ci right 8.311820e-01	k: 16519	n:20000
CEP110   20000 perm   5 sec   (4139 perm/sec)   p_kst 8.259500e-01   p_cons 2.145000e-02   p_joint 3.535000e-02

Joint ci ratio: 1.252178e-01	ci left: 2.964928e-02	ci right 3.364210e-02	k: 948	n:30000
Cons ci ratio: 1.492846e-01	ci left: 2.078729e-02	ci right 2.417273e-02	k: 673	n:30000
KS ci ratio: 1.039738e-02	ci left: 8.213926e-01	ci right 8.300108e-01	k: 24772	n:30000
CEP110   30000 perm   8 sec   (3990 perm/sec)   p_kst 8.257333e-01   p_cons 2.243333e-02   p_joint 3.160000e-02

Joint ci ratio: 1.026498e-01	ci left: 3.336659e-02	ci right 3.700130e-02	k: 1406	n:40000
Cons ci ratio: 1.283864e-01	ci left: 2.131102e-02	ci right 2.425883e-02	k: 910	n:40000
KS ci ratio: 9.023359e-03	ci left: 8.213664e-01	ci right 8.288364e-01	k: 33005	n:40000
CEP110   40000 perm   10 sec   (3881 perm/sec)   p_kst 8.251250e-01   p_cons 2.275000e-02   p_joint 3.515000e-02

Joint ci ratio: 8.978876e-02	ci left: 3.506887e-02	ci right 3.838520e-02	k: 1835	n:50000
Cons ci ratio: 1.145114e-01	ci left: 2.158717e-02	ci right 2.422862e-02	k: 1144	n:50000
KS ci ratio: 8.077557e-03	ci left: 8.215198e-01	ci right 8.282025e-01	k: 41244	n:50000
CEP110   50000 perm   13 sec   (3795 perm/sec)   p_kst 8.248800e-01   p_cons 2.288000e-02   p_joint 3.670000e-02

Joint ci ratio: 8.075946e-02	ci left: 3.625538e-02	ci right 3.932287e-02	k: 2266	n:60000
Cons ci ratio: 1.052817e-01	ci left: 2.139310e-02	ci right 2.378672e-02	k: 1354	n:60000
KS ci ratio: 7.368559e-03	ci left: 8.220196e-01	ci right 8.281156e-01	k: 49505	n:60000
CEP110   60000 perm   16 sec   (3724 perm/sec)   p_kst 8.250833e-01   p_cons 2.256667e-02   p_joint 3.776667e-02

Joint ci ratio: 7.618452e-02	ci left: 3.505276e-02	ci right 3.784298e-02	k: 2550	n:70000
Cons ci ratio: 9.656449e-02	ci left: 2.188824e-02	ci right 2.412297e-02	k: 1609	n:70000
KS ci ratio: 6.838091e-03	ci left: 8.215608e-01	ci right 8.272122e-01	k: 57708	n:70000
CEP110   70000 perm   19 sec   (3669 perm/sec)   p_kst 8.244000e-01   p_cons 2.298571e-02   p_joint 3.642857e-02

Outputting figure to mutsig2_images.part000000000036/CEP110.2_7146_70000_0.8244_0.022986_0.036429.png
                gene_name: CEP110
               theta_stop: 0.097 
                    nperm: 70000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.023 
      ci_cons_bounds_left: 0.022 
     ci_cons_bounds_right: 0.024 
                  p_joint: 0.036 
     ci_joint_bounds_left: 0.035 
    ci_joint_bounds_right: 0.038 

Current progress: 75 percent done.
CEP72
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.000613e-02	ci left: 6.209529e-01	ci right 6.399710e-01	k: 6305	n:10000
KS ci ratio: 2.505766e-02	ci left: 7.008953e-01	ci right 7.187823e-01	k: 7099	n:10000
CEP72   10000 perm   2 sec   (6115 perm/sec)   p_kst 7.099000e-01   p_cons 6.305000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000036/CEP72.2_1992_10000_0.7099_0.6305_1.png
                gene_name: CEP72
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
CEP76
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.230595e-02	ci left: 7.468514e-01	ci right 7.637996e-01	k: 7554	n:10000
KS ci ratio: 4.382332e-02	ci left: 4.346283e-01	ci right 4.542041e-01	k: 4444	n:10000
CEP76   10000 perm   2 sec   (6049 perm/sec)   p_kst 4.444000e-01   p_cons 7.554000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000036/CEP76.2_2028_10000_0.4444_0.7554_1.png
                gene_name: CEP76
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
CEP78
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.007393e-02	ci left: 4.790570e-01	ci right 4.987494e-01	k: 4889	n:10000
Cons ci ratio: 6.977475e-02	ci left: 2.314584e-01	ci right 2.482934e-01	k: 2398	n:10000
KS ci ratio: 2.469315e-02	ci left: 7.069489e-01	ci right 7.247252e-01	k: 7159	n:10000
CEP78   10000 perm   2 sec   (5963 perm/sec)   p_kst 7.159000e-01   p_cons 2.398000e-01   p_joint 4.889000e-01

Outputting figure to mutsig2_images.part000000000036/CEP78.2_2233_10000_0.7159_0.2398_0.4889.png
                gene_name: CEP78
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 81 percent done.
CER1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.182909e-02	ci left: 7.548431e-01	ci right 7.716033e-01	k: 7633	n:10000
KS ci ratio: 1.346599e-02	ci left: 8.883137e-01	ci right 9.004554e-01	k: 8945	n:10000
CER1   10000 perm   1 sec   (6744 perm/sec)   p_kst 8.945000e-01   p_cons 7.633000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000036/CER1.2_812_10000_0.8945_0.7633_1.png
                gene_name: CER1
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
CERCAM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.861618e-02	ci left: 3.843054e-01	ci right 4.035564e-01	k: 3939	n:10000
Cons ci ratio: 9.854893e-02	ci left: 1.298276e-01	ci right 1.433848e-01	k: 1365	n:10000
KS ci ratio: 7.559642e-02	ci left: 2.038267e-01	ci right 2.199415e-01	k: 2118	n:10000
CERCAM   10000 perm   2 sec   (6130 perm/sec)   p_kst 2.118000e-01   p_cons 1.365000e-01   p_joint 3.939000e-01

Outputting figure to mutsig2_images.part000000000036/CERCAM.2_1836_10000_0.2118_0.1365_0.3939.png
                gene_name: CERCAM
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 85 percent done.
CES1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.217141e-02	ci left: 2.195112e-01	ci right 2.360477e-01	k: 2277	n:10000
Cons ci ratio: 8.818083e-02	ci left: 1.576751e-01	ci right 1.723206e-01	k: 1649	n:10000
KS ci ratio: 3.079018e-02	ci left: 6.087955e-01	ci right 6.279355e-01	k: 6184	n:10000
CES1   10000 perm   2 sec   (6156 perm/sec)   p_kst 6.184000e-01   p_cons 1.649000e-01   p_joint 2.277000e-01

Outputting figure to mutsig2_images.part000000000036/CES1.2_1763_10000_0.6184_0.1649_0.2277.png
                gene_name: CES1
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 87 percent done.
CES7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.208602e-02	ci left: 3.520751e-01	ci right 3.710056e-01	k: 3615	n:10000
Cons ci ratio: 8.184094e-02	ci left: 1.789079e-01	ci right 1.942751e-01	k: 1865	n:10000
KS ci ratio: 2.536816e-02	ci left: 6.957512e-01	ci right 7.137293e-01	k: 7048	n:10000
CES7   10000 perm   2 sec   (5584 perm/sec)   p_kst 7.048000e-01   p_cons 1.865000e-01   p_joint 3.615000e-01

Outputting figure to mutsig2_images.part000000000036/CES7.2_1948_10000_0.7048_0.1865_0.3615.png
                gene_name: CES7
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 89 percent done.
CES8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.693157e-02	ci left: 8.355163e-01	ci right 8.498835e-01	k: 8428	n:10000
KS ci ratio: 5.332702e-02	ci left: 3.413419e-01	ci right 3.601452e-01	k: 3507	n:10000
CES8   10000 perm   2 sec   (5052 perm/sec)   p_kst 3.507000e-01   p_cons 8.428000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000036/CES8.2_1823_10000_0.3507_0.8428_1.png
                gene_name: CES8
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
CFB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.686731e-03	ci left: 9.835003e-01	ci right 9.882104e-01	k: 9860	n:10000
Cons ci ratio: 4.058238e-02	ci left: 4.727624e-01	ci right 4.924478e-01	k: 4826	n:10000
KS ci ratio: 8.847932e-03	ci left: 9.472103e-01	ci right 9.557242e-01	k: 9516	n:10000
CFB   10000 perm   2 sec   (4485 perm/sec)   p_kst 9.516000e-01   p_cons 4.826000e-01   p_joint 9.860000e-01

Outputting figure to mutsig2_images.part000000000036/CFB.2_2367_10000_0.9516_0.4826_0.986.png
                gene_name: CFB
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 92 percent done.
CFHR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.023269e-02	ci left: 1.849114e-01	ci right 2.004680e-01	k: 1926	n:10000
KS ci ratio: 3.600075e-02	ci left: 5.325743e-01	ci right 5.522010e-01	k: 5424	n:10000
CFHR1   10000 perm   2 sec   (6656 perm/sec)   p_kst 5.424000e-01   p_cons 1.926000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000036/CFHR1.2_1017_10000_0.5424_0.1926_1.png
                gene_name: CFHR1
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
CFHR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.697613e-02	ci left: 5.192595e-01	ci right 5.389235e-01	k: 5291	n:10000
KS ci ratio: 3.192992e-02	ci left: 5.914243e-01	ci right 6.107168e-01	k: 6011	n:10000
CFHR3   10000 perm   1 sec   (6763 perm/sec)   p_kst 6.011000e-01   p_cons 5.291000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000036/CFHR3.2_1017_10000_0.6011_0.5291_1.png
                gene_name: CFHR3
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
CFL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.321256e-02	ci left: 2.145771e-01	ci right 2.309847e-01	k: 2227	n:10000
Cons ci ratio: 9.719346e-02	ci left: 1.330589e-01	ci right 1.467516e-01	k: 1398	n:10000
KS ci ratio: 2.563659e-02	ci left: 6.913143e-01	ci right 7.093688e-01	k: 7004	n:10000
CFL1   10000 perm   1 sec   (7047 perm/sec)   p_kst 7.004000e-01   p_cons 1.398000e-01   p_joint 2.227000e-01

Outputting figure to mutsig2_images.part000000000036/CFL1.2_517_10000_0.7004_0.1398_0.2227.png
                gene_name: CFL1
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 98 percent done.
CGA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.389568e-02	ci left: 2.114201e-01	ci right 2.277435e-01	k: 2195	n:10000
KS ci ratio: 1.266032e-02	ci left: 8.997006e-01	ci right 9.112619e-01	k: 9056	n:10000
CGA   10000 perm   1 sec   (7052 perm/sec)   p_kst 9.056000e-01   p_cons 2.195000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000036/CGA.2_363_10000_0.9056_0.2195_1.png
                gene_name: CGA
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000036
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 36 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1416>
Subject: Job 8003959: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1416>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000037> was used as the working directory.
Started at Sun Nov 11 15:04:41 2012
Results reported at Sun Nov 11 17:37:59 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000037.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000037.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 37  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000037.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   9894.35 sec.
    Max Memory :      4838 MB
    Max Swap   :      7294 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
37
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 37
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 37: processing genes 3258 - 3347
Calculating significance of each gene.
Using projection method.
3258	CGB1	1
3259	CGB2	1
3260	CGB5	1
3261	CGB7	3.704890e-01
3262	CGB8	1
3263	CGGBP1	1
3264	CGN	7.093901e-01
3265	CGNL1	8.310461e-01
3266	CGREF1	1
3267	CGRRF1	2.540648e-01
3268	CH25H	6.555401e-01
3269	CHAC1	1
3270	CHAC2	6.624799e-02
3271	CHAD	1
3272	CHAF1A	1
3273	CHAF1B	1
3274	CHAT	2.326077e-01
3275	CHCHD1	1
3276	CHCHD10	2.070044e-01
3277	CHCHD2	1
3278	CHCHD3	4.043259e-01
3279	CHCHD4	1
3280	CHCHD5	1
3281	CHCHD6	1
3282	CHCHD7	1
3283	CHCHD8	3.521604e-01
3284	CHD1	6.883771e-01
3285	CHD1L	9.111476e-01
3286	CHD2	1
3287	CHD3	1
3288	CHD4	8.273411e-01
3289	CHD5	9.828138e-01
3290	CHD6	9.999722e-01
3291	CHD7	9.996964e-01
3292	CHD8	6.805530e-01
3293	CHD9	9.999625e-01
3294	CHDH	8.493403e-01
3295	CHEK1	2.568913e-02
3296	CHEK2	2.520606e-01
3297	CHERP	6.293333e-01
3298	CHFR	4.066987e-01
3299	CHGA	2.147584e-01
3300	CHGB	4.507327e-01
3301	CHI3L1	6.197875e-01
3302	CHI3L2	3.915133e-01
3303	CHIA	1
3304	CHIC2	4.561326e-01
3305	CHID1	6.763393e-01
3306	CHIT1	2.888872e-01
3307	CHKA	1.010982e-01
3308	CHKB	1
3309	CHL1	4.874385e-01
3310	CHM	6.909764e-01
3311	CHML	6.651329e-01
3312	CHMP1A	1
3313	CHMP1B	5.440319e-01
3314	CHMP2A	5.211053e-01
3315	CHMP2B	1
3316	CHMP4A	1
3317	CHMP4B	2.702308e-02
3318	CHMP4C	1
3319	CHMP5	5.207631e-01
3320	CHMP6	1
3321	CHMP7	1
3322	CHN1	4.652774e-01
3323	CHN2	9.939528e-02
3324	CHODL	1
3325	CHORDC1	7.445368e-02
3326	CHP	1.680439e-01
3327	CHP2	6.240267e-01
3328	CHPF	8.385785e-01
3329	CHPF2	1
3330	CHPT1	7.466662e-01
3331	CHRAC1	1
3332	CHRD	2.551243e-01
3333	CHRDL1	7.650157e-02
3334	CHRDL2	4.624177e-01
3335	CHRFAM7A	1
3336	CHRM1	1
3337	CHRM2	1
3338	CHRM3	9.609342e-02
3339	CHRM4	1
3340	CHRM5	2.785202e-01
3341	CHRNA1	4.828420e-01
3342	CHRNA10	1
3343	CHRNA2	1
3344	CHRNA3	2.634454e-01
3345	CHRNA4	1
3346	CHRNA5	6.992059e-01
3347	CHRNA6	1
Done

Running MutSig 2:
Scatter job 37: processing genes 3258 - 3347
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CHD7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.246886e-02	ci left: 7.441210e-01	ci right 7.611316e-01	k: 7527	n:10000
Cons ci ratio: 2.547181e-02	ci left: 6.940369e-01	ci right 7.120447e-01	k: 7031	n:10000
KS ci ratio: 3.207657e-02	ci left: 5.892161e-01	ci right 6.085262e-01	k: 5989	n:10000
CHD7   10000 perm   4 sec   (2512 perm/sec)   p_kst 5.989000e-01   p_cons 7.031000e-01   p_joint 7.527000e-01

Outputting figure to mutsig2_images.part000000000037/CHD7.18_9142_10000_0.5989_0.7031_0.7527.png
                gene_name: CHD7
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 2 percent done.
CHAT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.602602e-01	ci left: 9.594514e-03	ci right 1.389697e-02	k: 116	n:10000
Cons ci ratio: 2.408683e-01	ci left: 2.268733e-02	ci right 2.899301e-02	k: 257	n:10000
KS ci ratio: 2.389735e-01	ci left: 2.306380e-02	ci right 2.941625e-02	k: 261	n:10000
CHAT   10000 perm   2 sec   (4567 perm/sec)   p_kst 2.610000e-02   p_cons 2.570000e-02   p_joint 1.160000e-02

Joint ci ratio: 2.133397e-01	ci left: 1.482744e-02	ci right 1.841508e-02	k: 331	n:20000
Cons ci ratio: 1.777090e-01	ci left: 2.163632e-02	ci right 2.590368e-02	k: 474	n:20000
KS ci ratio: 1.598212e-01	ci left: 2.686219e-02	ci right 3.157601e-02	k: 583	n:20000
CHAT   20000 perm   5 sec   (4155 perm/sec)   p_kst 2.915000e-02   p_cons 2.370000e-02   p_joint 1.655000e-02

Joint ci ratio: 1.627664e-01	ci left: 1.742115e-02	ci right 2.053966e-02	k: 568	n:30000
Cons ci ratio: 1.472850e-01	ci left: 2.136549e-02	ci right 2.479440e-02	k: 691	n:30000
KS ci ratio: 1.314246e-01	ci left: 2.690430e-02	ci right 3.072102e-02	k: 863	n:30000
CHAT   30000 perm   8 sec   (3986 perm/sec)   p_kst 2.876667e-02   p_cons 2.303333e-02   p_joint 1.893333e-02

Joint ci ratio: 1.514366e-01	ci left: 1.522618e-02	ci right 1.774472e-02	k: 658	n:40000
Cons ci ratio: 1.280273e-01	ci left: 2.143209e-02	ci right 2.438773e-02	k: 915	n:40000
KS ci ratio: 1.151100e-01	ci left: 2.655092e-02	ci right 2.981806e-02	k: 1126	n:40000
CHAT   40000 perm   10 sec   (3870 perm/sec)   p_kst 2.815000e-02   p_cons 2.287500e-02   p_joint 1.645000e-02

Joint ci ratio: 1.593377e-01	ci left: 1.100637e-02	ci right 1.293091e-02	k: 597	n:50000
Cons ci ratio: 1.145626e-01	ci left: 2.156773e-02	ci right 2.420806e-02	k: 1143	n:50000
KS ci ratio: 1.035167e-01	ci left: 2.643495e-02	ci right 2.934021e-02	k: 1393	n:50000
CHAT   50000 perm   13 sec   (3783 perm/sec)   p_kst 2.786000e-02   p_cons 2.286000e-02   p_joint 1.194000e-02

Joint ci ratio: 1.482614e-01	ci left: 1.066224e-02	ci right 1.238550e-02	k: 690	n:60000
Cons ci ratio: 1.039550e-01	ci left: 2.194526e-02	ci right 2.436783e-02	k: 1388	n:60000
KS ci ratio: 9.475425e-02	ci left: 2.641769e-02	ci right 2.906159e-02	k: 1663	n:60000
CHAT   60000 perm   16 sec   (3693 perm/sec)   p_kst 2.771667e-02   p_cons 2.313333e-02   p_joint 1.150000e-02

Joint ci ratio: 1.247921e-01	ci left: 1.303191e-02	ci right 1.478015e-02	k: 972	n:70000
Cons ci ratio: 9.721541e-02	ci left: 2.159535e-02	ci right 2.381589e-02	k: 1588	n:70000
KS ci ratio: 8.761723e-02	ci left: 2.658061e-02	ci right 2.903017e-02	k: 1945	n:70000
CHAT   70000 perm   19 sec   (3617 perm/sec)   p_kst 2.778571e-02   p_cons 2.268571e-02   p_joint 1.388571e-02

Joint ci ratio: 1.297103e-01	ci left: 1.055487e-02	ci right 1.203089e-02	k: 902	n:80000
Cons ci ratio: 9.075794e-02	ci left: 2.175230e-02	ci right 2.383251e-02	k: 1822	n:80000
KS ci ratio: 8.207243e-02	ci left: 2.658594e-02	ci right 2.887349e-02	k: 2217	n:80000
CHAT   80000 perm   23 sec   (3530 perm/sec)   p_kst 2.771250e-02   p_cons 2.277500e-02   p_joint 1.127500e-02

Joint ci ratio: 1.240882e-01	ci left: 1.028573e-02	ci right 1.165717e-02	k: 986	n:90000
Cons ci ratio: 8.588674e-02	ci left: 2.164974e-02	ci right 2.360342e-02	k: 2035	n:90000
KS ci ratio: 7.755869e-02	ci left: 2.652849e-02	ci right 2.867988e-02	k: 2483	n:90000
CHAT   90000 perm   26 sec   (3454 perm/sec)   p_kst 2.758889e-02   p_cons 2.261111e-02   p_joint 1.095556e-02

Joint ci ratio: 9.859929e-02	ci left: 1.479223e-02	ci right 1.633606e-02	k: 1555	n:100000
Cons ci ratio: 8.191054e-02	ci left: 2.147210e-02	ci right 2.331575e-02	k: 2238	n:100000
KS ci ratio: 7.331955e-02	ci left: 2.677013e-02	ci right 2.881738e-02	k: 2778	n:100000
CHAT   100000 perm   30 sec   (3376 perm/sec)   p_kst 2.778000e-02   p_cons 2.238000e-02   p_joint 1.555000e-02

Outputting figure to mutsig2_images.part000000000037/CHAT.9_2351_100000_0.02778_0.02238_0.01555.png
                gene_name: CHAT
               theta_stop: 0.099 
                    nperm: 100000 
                     p_ks: 0.028 
        ci_ks_bounds_left: 0.027 
       ci_ks_bounds_right: 0.029 
                   p_cons: 0.022 
      ci_cons_bounds_left: 0.021 
     ci_cons_bounds_right: 0.023 
                  p_joint: 0.016 
     ci_joint_bounds_left: 0.015 
    ci_joint_bounds_right: 0.016 

Current progress: 5 percent done.
CHD5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.481118e-02	ci left: 3.290250e-01	ci right 3.476693e-01	k: 3383	n:10000
Cons ci ratio: 6.342511e-02	ci left: 2.675518e-01	ci right 2.851786e-01	k: 2763	n:10000
KS ci ratio: 6.028013e-02	ci left: 2.881535e-01	ci right 3.061648e-01	k: 2971	n:10000
CHD5   10000 perm   3 sec   (3433 perm/sec)   p_kst 2.971000e-01   p_cons 2.763000e-01   p_joint 3.383000e-01

Outputting figure to mutsig2_images.part000000000037/CHD5.9_6029_10000_0.2971_0.2763_0.3383.png
                gene_name: CHD5
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 7 percent done.
CHD8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.042826e-01	ci left: 1.173073e-01	ci right 1.303127e-01	k: 1237	n:10000
Cons ci ratio: 1.216940e-01	ci left: 8.825186e-02	ci right 9.978590e-02	k: 939	n:10000
KS ci ratio: 9.977908e-02	ci left: 1.269892e-01	ci right 1.404250e-01	k: 1336	n:10000
CHD8   10000 perm   3 sec   (2913 perm/sec)   p_kst 1.336000e-01   p_cons 9.390000e-02   p_joint 1.237000e-01

Joint ci ratio: 6.796664e-02	ci left: 1.377319e-01	ci right 1.474723e-01	k: 2851	n:20000
Cons ci ratio: 8.710467e-02	ci left: 8.793086e-02	ci right 9.598822e-02	k: 1838	n:20000
KS ci ratio: 6.799445e-02	ci left: 1.376333e-01	ci right 1.473708e-01	k: 2849	n:20000
CHD8   20000 perm   7 sec   (2748 perm/sec)   p_kst 1.424500e-01   p_cons 9.190000e-02   p_joint 1.425500e-01

Outputting figure to mutsig2_images.part000000000037/CHD8.9_7904_20000_0.14245_0.0919_0.14255.png
                gene_name: CHD8
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.092 
      ci_cons_bounds_left: 0.088 
     ci_cons_bounds_right: 0.096 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 9 percent done.
CHL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.225565e-02	ci left: 3.505841e-01	ci right 3.694975e-01	k: 3600	n:10000
Cons ci ratio: 4.413521e-02	ci left: 4.311373e-01	ci right 4.506972e-01	k: 4409	n:10000
KS ci ratio: 7.300181e-02	ci left: 2.155637e-01	ci right 2.319975e-01	k: 2237	n:10000
CHL1   10000 perm   2 sec   (4142 perm/sec)   p_kst 2.237000e-01   p_cons 4.409000e-01   p_joint 3.600000e-01

Outputting figure to mutsig2_images.part000000000037/CHL1.8_3779_10000_0.2237_0.4409_0.36.png
                gene_name: CHL1
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 11 percent done.
CHRM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.632097e-02	ci left: 5.281686e-01	ci right 5.478092e-01	k: 5380	n:10000
Cons ci ratio: 1.724980e-02	ci left: 8.304267e-01	ci right 8.449760e-01	k: 8378	n:10000
KS ci ratio: 5.980736e-02	ci left: 2.914241e-01	ci right 3.094923e-01	k: 3004	n:10000
CHRM2   10000 perm   2 sec   (5336 perm/sec)   p_kst 3.004000e-01   p_cons 8.378000e-01   p_joint 5.380000e-01

Outputting figure to mutsig2_images.part000000000037/CHRM2.8_1405_10000_0.3004_0.8378_0.538.png
                gene_name: CHRM2
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 14 percent done.
CHD6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.093456e-02	ci left: 1.495278e-01	ci right 1.638728e-01	k: 1566	n:10000
Cons ci ratio: 2.497861e-02	ci left: 7.022067e-01	ci right 7.200701e-01	k: 7112	n:10000
KS ci ratio: 1.953620e-01	ci left: 3.490925e-02	ci right 4.256245e-02	k: 386	n:10000
CHD6   10000 perm   3 sec   (2889 perm/sec)   p_kst 3.860000e-02   p_cons 7.112000e-01   p_joint 1.566000e-01

Joint ci ratio: 9.808669e-02	ci left: 7.031150e-02	ci right 7.761295e-02	k: 1478	n:20000
Cons ci ratio: 1.761783e-02	ci left: 7.059203e-01	ci right 7.185180e-01	k: 14245	n:20000
KS ci ratio: 1.388934e-01	ci left: 3.563416e-02	ci right 4.100114e-02	k: 765	n:20000
CHD6   20000 perm   7 sec   (2746 perm/sec)   p_kst 3.825000e-02   p_cons 7.122500e-01   p_joint 7.390000e-02

Joint ci ratio: 7.795501e-02	ci left: 7.469509e-02	ci right 8.078699e-02	k: 2331	n:30000
Cons ci ratio: 1.444878e-02	ci left: 7.052640e-01	ci right 7.155619e-01	k: 21313	n:30000
KS ci ratio: 1.138195e-01	ci left: 3.586462e-02	ci right 4.022542e-02	k: 1140	n:30000
CHD6   30000 perm   11 sec   (2660 perm/sec)   p_kst 3.800000e-02   p_cons 7.104333e-01   p_joint 7.770000e-02

Joint ci ratio: 6.645486e-02	ci left: 7.735943e-02	ci right 8.270172e-02	k: 3200	n:40000
Cons ci ratio: 1.246695e-02	ci left: 7.074843e-01	ci right 7.163849e-01	k: 28478	n:40000
KS ci ratio: 9.875102e-02	ci left: 3.602539e-02	ci right 3.979208e-02	k: 1515	n:40000
CHD6   40000 perm   15 sec   (2614 perm/sec)   p_kst 3.787500e-02   p_cons 7.119500e-01   p_joint 8.000000e-02

Outputting figure to mutsig2_images.part000000000037/CHD6.7_8292_40000_0.037875_0.71195_0.08.png
                gene_name: CHD6
               theta_stop: 0.099 
                    nperm: 40000 
                     p_ks: 0.038 
        ci_ks_bounds_left: 0.036 
       ci_ks_bounds_right: 0.040 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.080 
     ci_joint_bounds_left: 0.077 
    ci_joint_bounds_right: 0.083 

Current progress: 16 percent done.
CHD9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.487959e-02	ci left: 1.388391e-01	ci right 1.527680e-01	k: 1457	n:10000
Cons ci ratio: 2.468251e-01	ci left: 2.155910e-02	ci right 2.772208e-02	k: 245	n:10000
KS ci ratio: 1.556154e-02	ci left: 8.570234e-01	ci right 8.705639e-01	k: 8639	n:10000
CHD9   10000 perm   4 sec   (2686 perm/sec)   p_kst 8.639000e-01   p_cons 2.450000e-02   p_joint 1.457000e-01

Joint ci ratio: 1.214604e-01	ci left: 4.648596e-02	ci right 5.254587e-02	k: 989	n:20000
Cons ci ratio: 1.829035e-01	ci left: 2.039379e-02	ci right 2.454665e-02	k: 448	n:20000
KS ci ratio: 1.087617e-02	ci left: 8.618095e-01	ci right 8.712836e-01	k: 17332	n:20000
CHD9   20000 perm   8 sec   (2512 perm/sec)   p_kst 8.666000e-01   p_cons 2.240000e-02   p_joint 4.945000e-02

Joint ci ratio: 6.294816e-02	ci left: 1.108519e-01	ci right 1.180896e-01	k: 3433	n:30000
Cons ci ratio: 1.476129e-01	ci left: 2.126910e-02	ci right 2.469081e-02	k: 688	n:30000
KS ci ratio: 8.837821e-03	ci left: 8.638137e-01	ci right 8.715149e-01	k: 26031	n:30000
CHD9   30000 perm   12 sec   (2495 perm/sec)   p_kst 8.677000e-01   p_cons 2.293333e-02   p_joint 1.144333e-01

Joint ci ratio: 5.898804e-02	ci left: 9.648456e-02	ci right 1.023737e-01	k: 3976	n:40000
Cons ci ratio: 1.278845e-01	ci left: 2.148053e-02	ci right 2.443929e-02	k: 917	n:40000
KS ci ratio: 7.641165e-03	ci left: 8.647194e-01	ci right 8.713770e-01	k: 34723	n:40000
CHD9   40000 perm   16 sec   (2470 perm/sec)   p_kst 8.680750e-01   p_cons 2.292500e-02   p_joint 9.940000e-02

Joint ci ratio: 6.243373e-02	ci left: 7.079381e-02	ci right 7.537590e-02	k: 3653	n:50000
Cons ci ratio: 1.143582e-01	ci left: 2.164549e-02	ci right 2.429029e-02	k: 1147	n:50000
KS ci ratio: 7.103340e-03	ci left: 8.558985e-01	ci right 8.620198e-01	k: 42949	n:50000
CHD9   50000 perm   20 sec   (2458 perm/sec)   p_kst 8.589800e-01   p_cons 2.294000e-02   p_joint 7.306000e-02

Joint ci ratio: 5.842084e-02	ci left: 6.775720e-02	ci right 7.185119e-02	k: 4187	n:60000
Cons ci ratio: 1.047295e-01	ci left: 2.162044e-02	ci right 2.402602e-02	k: 1368	n:60000
KS ci ratio: 6.471371e-03	ci left: 8.566601e-01	ci right 8.622384e-01	k: 51568	n:60000
CHD9   60000 perm   25 sec   (2434 perm/sec)   p_kst 8.594667e-01   p_cons 2.280000e-02   p_joint 6.978333e-02

Joint ci ratio: 4.810481e-02	ci left: 8.455481e-02	ci right 8.873668e-02	k: 6064	n:70000
Cons ci ratio: 9.756150e-02	ci left: 2.144195e-02	ci right 2.365502e-02	k: 1577	n:70000
KS ci ratio: 6.118852e-03	ci left: 8.516646e-01	ci right 8.569060e-01	k: 59801	n:70000
CHD9   70000 perm   29 sec   (2403 perm/sec)   p_kst 8.543000e-01   p_cons 2.252857e-02   p_joint 8.662857e-02

Outputting figure to mutsig2_images.part000000000037/CHD9.7_8798_70000_0.8543_0.022529_0.086629.png
                gene_name: CHD9
               theta_stop: 0.098 
                    nperm: 70000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.023 
      ci_cons_bounds_left: 0.021 
     ci_cons_bounds_right: 0.024 
                  p_joint: 0.087 
     ci_joint_bounds_left: 0.085 
    ci_joint_bounds_right: 0.089 

Current progress: 18 percent done.
CHGB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.691682e-02	ci left: 5.200602e-01	ci right 5.397224e-01	k: 5299	n:10000
Cons ci ratio: 7.459246e-02	ci left: 2.082639e-01	ci right 2.245016e-01	k: 2163	n:10000
KS ci ratio: 5.079150e-02	ci left: 3.637086e-01	ci right 3.827653e-01	k: 3732	n:10000
CHGB   10000 perm   2 sec   (5096 perm/sec)   p_kst 3.732000e-01   p_cons 2.163000e-01   p_joint 5.299000e-01

Outputting figure to mutsig2_images.part000000000037/CHGB.7_2054_10000_0.3732_0.2163_0.5299.png
                gene_name: CHGB
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 20 percent done.
CHD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.683164e-02	ci left: 1.339403e-01	ci right 1.476696e-01	k: 1407	n:10000
Cons ci ratio: 2.118569e-01	ci left: 2.958536e-02	ci right 3.669001e-02	k: 330	n:10000
KS ci ratio: 3.683541e-02	ci left: 5.211612e-01	ci right 5.408207e-01	k: 5310	n:10000
CHD1   10000 perm   3 sec   (3718 perm/sec)   p_kst 5.310000e-01   p_cons 3.300000e-02   p_joint 1.407000e-01

Joint ci ratio: 5.498154e-02	ci left: 1.970481e-01	ci right 2.082385e-01	k: 4052	n:20000
Cons ci ratio: 1.469628e-01	ci left: 3.182056e-02	ci right 3.691598e-02	k: 686	n:20000
KS ci ratio: 2.649357e-02	ci left: 5.155997e-01	ci right 5.294938e-01	k: 10451	n:20000
CHD1   20000 perm   6 sec   (3370 perm/sec)   p_kst 5.225500e-01   p_cons 3.430000e-02   p_joint 2.026000e-01

Joint ci ratio: 5.407983e-02	ci left: 1.449880e-01	ci right 1.530801e-01	k: 4470	n:30000
Cons ci ratio: 1.214993e-01	ci left: 3.149246e-02	ci right 3.559852e-02	k: 1005	n:30000
KS ci ratio: 2.165772e-02	ci left: 5.162956e-01	ci right 5.276334e-01	k: 15659	n:30000
CHD1   30000 perm   9 sec   (3314 perm/sec)   p_kst 5.219667e-01   p_cons 3.350000e-02   p_joint 1.490000e-01

Joint ci ratio: 4.204367e-02	ci left: 1.747583e-01	ci right 1.822885e-01	k: 7140	n:40000
Cons ci ratio: 1.049121e-01	ci left: 3.195298e-02	ci right 3.551513e-02	k: 1348	n:40000
KS ci ratio: 1.776682e-02	ci left: 5.440327e-01	ci right 5.538102e-01	k: 21957	n:40000
CHD1   40000 perm   12 sec   (3244 perm/sec)   p_kst 5.489250e-01   p_cons 3.370000e-02   p_joint 1.785000e-01

Joint ci ratio: 4.215203e-02	ci left: 1.443429e-01	ci right 1.505781e-01	k: 7372	n:50000
Cons ci ratio: 9.407484e-02	ci left: 3.197902e-02	ci right 3.515543e-02	k: 1677	n:50000
KS ci ratio: 1.593766e-02	ci left: 5.431045e-01	ci right 5.518499e-01	k: 27374	n:50000
CHD1   50000 perm   16 sec   (3174 perm/sec)   p_kst 5.474800e-01   p_cons 3.354000e-02   p_joint 1.474400e-01

Outputting figure to mutsig2_images.part000000000037/CHD1.6_5273_50000_0.54748_0.03354_0.14744.png
                gene_name: CHD1
               theta_stop: 0.094 
                    nperm: 50000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.034 
      ci_cons_bounds_left: 0.032 
     ci_cons_bounds_right: 0.035 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 23 percent done.
CHD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.288572e-01	ci left: 2.523219e-02	ci right 3.184628e-02	k: 284	n:10000
Cons ci ratio: 1.661901e-01	ci left: 4.830553e-02	ci right 5.715732e-02	k: 526	n:10000
KS ci ratio: 1.846975e-01	ci left: 3.910770e-02	ci right 4.716118e-02	k: 430	n:10000
CHD4   10000 perm   3 sec   (3745 perm/sec)   p_kst 4.300000e-02   p_cons 5.260000e-02   p_joint 2.840000e-02

Joint ci ratio: 1.739927e-01	ci left: 2.259326e-02	ci right 2.694640e-02	k: 494	n:20000
Cons ci ratio: 1.163560e-01	ci left: 5.056727e-02	ci right 5.686327e-02	k: 1073	n:20000
KS ci ratio: 1.276899e-01	ci left: 4.211982e-02	ci right 4.791339e-02	k: 899	n:20000
CHD4   20000 perm   6 sec   (3422 perm/sec)   p_kst 4.495000e-02   p_cons 5.365000e-02   p_joint 2.470000e-02

Joint ci ratio: 1.416262e-01	ci left: 2.313404e-02	ci right 2.669212e-02	k: 746	n:30000
Cons ci ratio: 9.692741e-02	ci left: 4.918871e-02	ci right 5.423189e-02	k: 1550	n:30000
KS ci ratio: 1.023295e-01	ci left: 4.424217e-02	ci right 4.904611e-02	k: 1398	n:30000
CHD4   30000 perm   9 sec   (3301 perm/sec)   p_kst 4.660000e-02   p_cons 5.166667e-02   p_joint 2.486667e-02

Joint ci ratio: 1.300767e-01	ci left: 2.075422e-02	ci right 2.366572e-02	k: 887	n:40000
Cons ci ratio: 8.398474e-02	ci left: 4.947672e-02	ci right 5.383866e-02	k: 2065	n:40000
KS ci ratio: 9.199002e-02	ci left: 4.142394e-02	ci right 4.544268e-02	k: 1736	n:40000
CHD4   40000 perm   13 sec   (3172 perm/sec)   p_kst 4.340000e-02   p_cons 5.162500e-02   p_joint 2.217500e-02

Joint ci ratio: 1.265789e-01	ci left: 1.762752e-02	ci right 2.002880e-02	k: 940	n:50000
Cons ci ratio: 7.549678e-02	ci left: 4.922527e-02	ci right 5.310705e-02	k: 2557	n:50000
KS ci ratio: 8.238274e-02	ci left: 4.153256e-02	ci right 4.512071e-02	k: 2165	n:50000
CHD4   50000 perm   16 sec   (3106 perm/sec)   p_kst 4.330000e-02   p_cons 5.114000e-02   p_joint 1.880000e-02

Joint ci ratio: 9.251931e-02	ci left: 2.770436e-02	ci right 3.040811e-02	k: 1742	n:60000
Cons ci ratio: 6.858518e-02	ci left: 4.985970e-02	ci right 5.341716e-02	k: 3097	n:60000
KS ci ratio: 7.534441e-02	ci left: 4.153793e-02	ci right 4.480644e-02	k: 2589	n:60000
CHD4   60000 perm   20 sec   (3045 perm/sec)   p_kst 4.315000e-02   p_cons 5.161667e-02   p_joint 2.903333e-02

Outputting figure to mutsig2_images.part000000000037/CHD4.6_5895_60000_0.04315_0.051617_0.029033.png
                gene_name: CHD4
               theta_stop: 0.093 
                    nperm: 60000 
                     p_ks: 0.043 
        ci_ks_bounds_left: 0.042 
       ci_ks_bounds_right: 0.045 
                   p_cons: 0.052 
      ci_cons_bounds_left: 0.050 
     ci_cons_bounds_right: 0.053 
                  p_joint: 0.029 
     ci_joint_bounds_left: 0.028 
    ci_joint_bounds_right: 0.030 

Current progress: 25 percent done.
CHN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.179286e-02	ci left: 7.554502e-01	ci right 7.721959e-01	k: 7639	n:10000
Cons ci ratio: 2.255029e-03	ci left: 9.954855e-01	ci right 9.978102e-01	k: 9968	n:10000
KS ci ratio: 2.862992e-02	ci left: 6.426714e-01	ci right 6.614400e-01	k: 6521	n:10000
CHN2   10000 perm   2 sec   (5888 perm/sec)   p_kst 6.521000e-01   p_cons 9.968000e-01   p_joint 7.639000e-01

Outputting figure to mutsig2_images.part000000000037/CHN2.6_1627_10000_0.6521_0.9968_0.7639.png
                gene_name: CHN2
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 27 percent done.
CHRD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.231072e-02	ci left: 5.857036e-01	ci right 6.050408e-01	k: 5954	n:10000
Cons ci ratio: 4.177929e-02	ci left: 4.582806e-01	ci right 4.779380e-01	k: 4681	n:10000
KS ci ratio: 4.157017e-02	ci left: 4.607769e-01	ci right 4.804402e-01	k: 4706	n:10000
CHRD   10000 perm   2 sec   (4907 perm/sec)   p_kst 4.706000e-01   p_cons 4.681000e-01   p_joint 5.954000e-01

Outputting figure to mutsig2_images.part000000000037/CHRD.6_2960_10000_0.4706_0.4681_0.5954.png
                gene_name: CHRD
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 30 percent done.
CGN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.771470e-02	ci left: 2.424265e-01	ci right 2.595188e-01	k: 2509	n:10000
Cons ci ratio: 3.639408e-02	ci left: 5.271675e-01	ci right 5.468110e-01	k: 5370	n:10000
KS ci ratio: 1.009590e-01	ci left: 1.243474e-01	ci right 1.376684e-01	k: 1309	n:10000
CGN   10000 perm   2 sec   (4451 perm/sec)   p_kst 1.309000e-01   p_cons 5.370000e-01   p_joint 2.509000e-01

Joint ci ratio: 4.440982e-02	ci left: 2.740826e-01	ci right 2.865814e-01	k: 5606	n:20000
Cons ci ratio: 2.525617e-02	ci left: 5.394190e-01	ci right 5.532675e-01	k: 10927	n:20000
KS ci ratio: 7.212038e-02	ci left: 1.240390e-01	ci right 1.333692e-01	k: 2573	n:20000
CGN   20000 perm   5 sec   (4033 perm/sec)   p_kst 1.286500e-01   p_cons 5.463500e-01   p_joint 2.803000e-01

Outputting figure to mutsig2_images.part000000000037/CGN.5_3692_20000_0.12865_0.54635_0.2803.png
                gene_name: CGN
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 32 percent done.
CHEK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.490019e-02	ci left: 8.671325e-01	ci right 8.802490e-01	k: 8738	n:10000
KS ci ratio: 1.585132e-02	ci left: 8.525343e-01	ci right 8.662556e-01	k: 8595	n:10000
CHEK1   10000 perm   2 sec   (5690 perm/sec)   p_kst 8.595000e-01   p_cons 8.738000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000037/CHEK1.5_1479_10000_0.8595_0.8738_1.png
                gene_name: CHEK1
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 34 percent done.
CHIA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.509652e-02	ci left: 5.451948e-01	ci right 5.647731e-01	k: 5550	n:10000
Cons ci ratio: 5.009327e-02	ci left: 3.701742e-01	ci right 3.892959e-01	k: 3797	n:10000
KS ci ratio: 5.038155e-02	ci left: 3.674883e-01	ci right 3.865834e-01	k: 3770	n:10000
CHIA   10000 perm   2 sec   (6107 perm/sec)   p_kst 3.770000e-01   p_cons 3.797000e-01   p_joint 5.550000e-01

Outputting figure to mutsig2_images.part000000000037/CHIA.5_1475_10000_0.377_0.3797_0.555.png
                gene_name: CHIA
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.56 

Current progress: 36 percent done.
CHIT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.287741e-01	ci left: 7.931430e-02	ci right 9.032897e-02	k: 847	n:10000
Cons ci ratio: 1.343944e-01	ci left: 7.310807e-02	ci right 8.373906e-02	k: 783	n:10000
KS ci ratio: 6.575560e-02	ci left: 2.535008e-01	ci right 2.708379e-01	k: 2621	n:10000
CHIT1   10000 perm   2 sec   (6157 perm/sec)   p_kst 2.621000e-01   p_cons 7.830000e-02   p_joint 8.470000e-02

Joint ci ratio: 6.031868e-02	ci left: 1.690650e-01	ci right 1.796299e-01	k: 3486	n:20000
Cons ci ratio: 9.480375e-02	ci left: 7.500461e-02	ci right 8.251839e-02	k: 1574	n:20000
KS ci ratio: 4.641859e-02	ci left: 2.567097e-01	ci right 2.689593e-01	k: 5256	n:20000
CHIT1   20000 perm   4 sec   (5375 perm/sec)   p_kst 2.628000e-01   p_cons 7.870000e-02   p_joint 1.743000e-01

Outputting figure to mutsig2_images.part000000000037/CHIT1.5_1445_20000_0.2628_0.0787_0.1743.png
                gene_name: CHIT1
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.079 
      ci_cons_bounds_left: 0.075 
     ci_cons_bounds_right: 0.083 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 39 percent done.
CHRM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.316274e-02	ci left: 7.324964e-01	ci right 7.497629e-01	k: 7412	n:10000
KS ci ratio: 2.309032e-02	ci left: 7.337090e-01	ci right 7.509496e-01	k: 7424	n:10000
CHRM3   10000 perm   2 sec   (5168 perm/sec)   p_kst 7.424000e-01   p_cons 7.412000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000037/CHRM3.5_1777_10000_0.7424_0.7412_1.png
                gene_name: CHRM3
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 41 percent done.
CGNL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.413621e-01	ci left: 6.633192e-02	ci right 7.651945e-02	k: 713	n:10000
Cons ci ratio: 1.015329e-02	ci left: 9.322664e-01	ci right 9.418771e-01	k: 9372	n:10000
KS ci ratio: 3.054647e-01	ci left: 1.372489e-02	ci right 1.876262e-02	k: 161	n:10000
CGNL1   10000 perm   2 sec   (4891 perm/sec)   p_kst 1.610000e-02   p_cons 9.372000e-01   p_joint 7.130000e-02

Joint ci ratio: 1.178714e-01	ci left: 4.930341e-02	ci right 5.552753e-02	k: 1047	n:20000
Cons ci ratio: 7.122345e-03	ci left: 9.346712e-01	ci right 9.414008e-01	k: 18762	n:20000
KS ci ratio: 2.021709e-01	ci left: 1.658271e-02	ci right 2.035914e-02	k: 368	n:20000
CGNL1   20000 perm   5 sec   (4252 perm/sec)   p_kst 1.840000e-02   p_cons 9.381000e-01   p_joint 5.235000e-02

Joint ci ratio: 9.917276e-02	ci left: 4.703999e-02	ci right 5.198105e-02	k: 1484	n:30000
Cons ci ratio: 5.482234e-03	ci left: 9.419514e-01	ci right 9.471621e-01	k: 28338	n:30000
KS ci ratio: 1.692487e-01	ci left: 1.607835e-02	ci right 1.908278e-02	k: 526	n:30000
CGNL1   30000 perm   7 sec   (4078 perm/sec)   p_kst 1.753333e-02   p_cons 9.446000e-01   p_joint 4.946667e-02

Joint ci ratio: 8.485446e-02	ci left: 4.849676e-02	ci right 5.281877e-02	k: 2025	n:40000
Cons ci ratio: 4.665308e-03	ci left: 9.441477e-01	ci right 9.485872e-01	k: 37856	n:40000
KS ci ratio: 1.454891e-01	ci left: 1.652682e-02	ci right 1.914384e-02	k: 712	n:40000
CGNL1   40000 perm   10 sec   (3971 perm/sec)   p_kst 1.780000e-02   p_cons 9.464000e-01   p_joint 5.062500e-02

Joint ci ratio: 8.579278e-02	ci left: 3.835789e-02	ci right 4.181577e-02	k: 2003	n:50000
Cons ci ratio: 4.184946e-03	ci left: 9.440846e-01	ci right 9.480634e-01	k: 47305	n:50000
KS ci ratio: 1.302227e-01	ci left: 1.663973e-02	ci right 1.897674e-02	k: 889	n:50000
CGNL1   50000 perm   13 sec   (3872 perm/sec)   p_kst 1.778000e-02   p_cons 9.461000e-01   p_joint 4.006000e-02

Joint ci ratio: 7.542053e-02	ci left: 4.145610e-02	ci right 4.472161e-02	k: 2584	n:60000
Cons ci ratio: 3.987753e-03	ci left: 9.396431e-01	ci right 9.434140e-01	k: 56493	n:60000
KS ci ratio: 1.188767e-01	ci left: 1.674087e-02	ci right 1.887281e-02	k: 1067	n:60000
CGNL1   60000 perm   16 sec   (3786 perm/sec)   p_kst 1.778333e-02   p_cons 9.415500e-01   p_joint 4.306667e-02

Joint ci ratio: 7.881970e-02	ci left: 3.278177e-02	ci right 3.548560e-02	k: 2388	n:70000
Cons ci ratio: 3.680613e-03	ci left: 9.401270e-01	ci right 9.436077e-01	k: 65932	n:70000
KS ci ratio: 1.104655e-01	ci left: 1.669439e-02	ci right 1.866017e-02	k: 1236	n:70000
CGNL1   70000 perm   19 sec   (3708 perm/sec)   p_kst 1.765714e-02   p_cons 9.418857e-01   p_joint 3.411429e-02

Joint ci ratio: 6.635575e-02	ci left: 4.041127e-02	ci right 4.319708e-02	k: 3343	n:80000
Cons ci ratio: 3.451048e-03	ci left: 9.399780e-01	ci right 9.432398e-01	k: 75330	n:80000
KS ci ratio: 1.030611e-01	ci left: 1.684629e-02	ci right 1.868892e-02	k: 1420	n:80000
CGNL1   80000 perm   22 sec   (3643 perm/sec)   p_kst 1.775000e-02   p_cons 9.416250e-01   p_joint 4.178750e-02

Joint ci ratio: 6.682836e-02	ci left: 3.559031e-02	ci right 3.806188e-02	k: 3313	n:90000
Cons ci ratio: 3.258004e-03	ci left: 9.399244e-01	ci right 9.430026e-01	k: 84733	n:90000
KS ci ratio: 9.762259e-02	ci left: 1.674011e-02	ci right 1.846896e-02	k: 1583	n:90000
CGNL1   90000 perm   25 sec   (3579 perm/sec)   p_kst 1.758889e-02   p_cons 9.414778e-01   p_joint 3.681111e-02

Outputting figure to mutsig2_images.part000000000037/CGNL1.4_3981_90000_0.017589_0.94148_0.036811.png
                gene_name: CGNL1
               theta_stop: 0.098 
                    nperm: 90000 
                     p_ks: 0.018 
        ci_ks_bounds_left: 0.017 
       ci_ks_bounds_right: 0.018 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.037 
     ci_joint_bounds_left: 0.036 
    ci_joint_bounds_right: 0.038 

Current progress: 43 percent done.
CHD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.902580e-02	ci left: 3.803239e-01	ci right 3.995402e-01	k: 3899	n:10000
KS ci ratio: 1.693796e-02	ci left: 8.354145e-01	ci right 8.497853e-01	k: 8427	n:10000
CHD2   10000 perm   3 sec   (3912 perm/sec)   p_kst 8.427000e-01   p_cons 3.899000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000037/CHD2.4_5643_10000_0.8427_0.3899_1.png
                gene_name: CHD2
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 45 percent done.
CHKA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.239779e-02	ci left: 2.184255e-01	ci right 2.349340e-01	k: 2266	n:10000
Cons ci ratio: 1.351440e-01	ci left: 7.233299e-02	ci right 8.291462e-02	k: 775	n:10000
KS ci ratio: 4.649454e-02	ci left: 4.057173e-01	ci right 4.251320e-01	k: 4154	n:10000
CHKA   10000 perm   2 sec   (5861 perm/sec)   p_kst 4.154000e-01   p_cons 7.750000e-02   p_joint 2.266000e-01

Joint ci ratio: 5.404649e-02	ci left: 2.025907e-01	ci right 2.138943e-01	k: 4164	n:20000
Cons ci ratio: 9.464079e-02	ci left: 7.524916e-02	ci right 8.277377e-02	k: 1579	n:20000
KS ci ratio: 3.245352e-02	ci left: 4.148927e-01	ci right 4.286301e-01	k: 8435	n:20000
CHKA   20000 perm   4 sec   (5156 perm/sec)   p_kst 4.217500e-01   p_cons 7.895000e-02   p_joint 2.082000e-01

Outputting figure to mutsig2_images.part000000000037/CHKA.4_1422_20000_0.42175_0.07895_0.2082.png
                gene_name: CHKA
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.079 
      ci_cons_bounds_left: 0.075 
     ci_cons_bounds_right: 0.083 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 48 percent done.
CHMP4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.875794e-02	ci left: 8.059280e-01	ci right 8.212889e-01	k: 8137	n:10000
Cons ci ratio: 4.216718e-02	ci left: 4.536882e-01	ci right 4.733331e-01	k: 4635	n:10000
KS ci ratio: 2.225767e-02	ci left: 7.476605e-01	ci right 7.645900e-01	k: 7562	n:10000
CHMP4B   10000 perm   2 sec   (5903 perm/sec)   p_kst 7.562000e-01   p_cons 4.635000e-01   p_joint 8.137000e-01

Outputting figure to mutsig2_images.part000000000037/CHMP4B.4_695_10000_0.7562_0.4635_0.8137.png
                gene_name: CHMP4B
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 50 percent done.
CHRDL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.539235e-02	ci left: 4.173773e-01	ci right 4.368652e-01	k: 4271	n:10000
Cons ci ratio: 3.087503e-02	ci left: 6.074897e-01	ci right 6.266420e-01	k: 6171	n:10000
KS ci ratio: 6.886859e-02	ci left: 2.362004e-01	ci right 2.531486e-01	k: 2446	n:10000
CHRDL1   10000 perm   2 sec   (5289 perm/sec)   p_kst 2.446000e-01   p_cons 6.171000e-01   p_joint 4.271000e-01

Outputting figure to mutsig2_images.part000000000037/CHRDL1.4_1421_10000_0.2446_0.6171_0.4271.png
                gene_name: CHRDL1
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 52 percent done.
CHRNA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.902845e-02	ci left: 6.363347e-01	ci right 6.551803e-01	k: 6458	n:10000
Cons ci ratio: 9.076292e-02	ci left: 1.500184e-01	ci right 1.643819e-01	k: 1571	n:10000
KS ci ratio: 1.857837e-02	ci left: 8.088732e-01	ci right 8.241419e-01	k: 8166	n:10000
CHRNA1   10000 perm   2 sec   (5339 perm/sec)   p_kst 8.166000e-01   p_cons 1.571000e-01   p_joint 6.458000e-01

Outputting figure to mutsig2_images.part000000000037/CHRNA1.4_1489_10000_0.8166_0.1571_0.6458.png
                gene_name: CHRNA1
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 55 percent done.
CHEK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.931779e-02	ci left: 1.542387e-01	ci right 1.687591e-01	k: 1614	n:10000
Cons ci ratio: 6.225664e-02	ci left: 2.749777e-01	ci right 2.927484e-01	k: 2838	n:10000
KS ci ratio: 2.389735e-01	ci left: 2.306380e-02	ci right 2.941625e-02	k: 261	n:10000
CHEK2   10000 perm   2 sec   (5591 perm/sec)   p_kst 2.610000e-02   p_cons 2.838000e-01   p_joint 1.614000e-01

Joint ci ratio: 9.954792e-02	ci left: 6.835732e-02	ci right 7.556772e-02	k: 1438	n:20000
Cons ci ratio: 4.396825e-02	ci left: 2.781048e-01	ci right 2.906579e-01	k: 5687	n:20000
KS ci ratio: 1.696499e-01	ci left: 2.379073e-02	ci right 2.824852e-02	k: 519	n:20000
CHEK2   20000 perm   4 sec   (5061 perm/sec)   p_kst 2.595000e-02   p_cons 2.843500e-01   p_joint 7.190000e-02

Joint ci ratio: 8.923694e-02	ci left: 5.773026e-02	ci right 6.315525e-02	k: 1812	n:30000
Cons ci ratio: 3.576815e-02	ci left: 2.807581e-01	ci right 2.910167e-01	k: 8576	n:30000
KS ci ratio: 1.371714e-01	ci left: 2.467957e-02	ci right 2.834624e-02	k: 794	n:30000
CHEK2   30000 perm   6 sec   (4841 perm/sec)   p_kst 2.646667e-02   p_cons 2.858667e-01   p_joint 6.040000e-02

Joint ci ratio: 8.918167e-02	ci left: 4.401654e-02	ci right 4.814968e-02	k: 1842	n:40000
Cons ci ratio: 2.995014e-02	ci left: 2.953371e-01	ci right 3.043420e-01	k: 11993	n:40000
KS ci ratio: 1.190253e-01	ci left: 2.482656e-02	ci right 2.799270e-02	k: 1055	n:40000
CHEK2   40000 perm   9 sec   (4682 perm/sec)   p_kst 2.637500e-02   p_cons 2.998250e-01   p_joint 4.605000e-02

Joint ci ratio: 8.649206e-02	ci left: 3.775073e-02	ci right 4.118301e-02	k: 1972	n:50000
Cons ci ratio: 2.672393e-02	ci left: 2.968217e-01	ci right 3.048814e-01	k: 15042	n:50000
KS ci ratio: 1.078525e-01	ci left: 2.435006e-02	ci right 2.714537e-02	k: 1286	n:50000
CHEK2   50000 perm   11 sec   (4554 perm/sec)   p_kst 2.572000e-02   p_cons 3.008400e-01   p_joint 3.944000e-02

Joint ci ratio: 7.372293e-02	ci left: 4.333859e-02	ci right 4.667227e-02	k: 2699	n:60000
Cons ci ratio: 2.445032e-02	ci left: 2.962350e-01	ci right 3.035844e-01	k: 17994	n:60000
KS ci ratio: 9.889680e-02	ci left: 2.425331e-02	ci right 2.679286e-02	k: 1530	n:60000
CHEK2   60000 perm   14 sec   (4443 perm/sec)   p_kst 2.550000e-02   p_cons 2.999000e-01   p_joint 4.498333e-02

Outputting figure to mutsig2_images.part000000000037/CHEK2.3_1821_60000_0.0255_0.2999_0.044983.png
                gene_name: CHEK2
               theta_stop: 0.099 
                    nperm: 60000 
                     p_ks: 0.025 
        ci_ks_bounds_left: 0.024 
       ci_ks_bounds_right: 0.027 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.045 
     ci_joint_bounds_left: 0.043 
    ci_joint_bounds_right: 0.047 

Current progress: 57 percent done.
CHERP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.789283e-02	ci left: 8.200516e-01	ci right 8.349571e-01	k: 8276	n:10000
Cons ci ratio: 1.081773e-02	ci left: 9.241000e-01	ci right 9.342483e-01	k: 9293	n:10000
KS ci ratio: 3.589935e-02	ci left: 5.339763e-01	ci right 5.535982e-01	k: 5438	n:10000
CHERP   10000 perm   2 sec   (5149 perm/sec)   p_kst 5.438000e-01   p_cons 9.293000e-01   p_joint 8.276000e-01

Outputting figure to mutsig2_images.part000000000037/CHERP.3_2819_10000_0.5438_0.9293_0.8276.png
                gene_name: CHERP
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 59 percent done.
CHFR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.003467e-01	ci left: 4.581663e-03	ci right 7.716529e-03	k: 60	n:10000
Cons ci ratio: 1.922228e-03	ci left: 9.965509e-01	ci right 9.985415e-01	k: 9977	n:10000
KS ci ratio: 1.130871e+00	ci left: 5.492399e-04	ci right 1.967349e-03	k: 11	n:10000
CHFR   10000 perm   2 sec   (5779 perm/sec)   p_kst 1.100000e-03   p_cons 9.977000e-01   p_joint 6.000000e-03

Joint ci ratio: 2.950176e-01	ci left: 7.459769e-03	ci right 1.008604e-02	k: 174	n:20000
Cons ci ratio: 1.557963e-03	ci left: 9.960277e-01	ci right 9.976224e-01	k: 19938	n:20000
KS ci ratio: 9.503118e-01	ci left: 4.573361e-04	ci right 1.298826e-03	k: 16	n:20000
CHFR   20000 perm   4 sec   (5001 perm/sec)   p_kst 8.000000e-04   p_cons 9.969000e-01   p_joint 8.700000e-03

Joint ci ratio: 2.563593e-01	ci left: 6.742109e-03	ci right 8.754981e-03	k: 231	n:30000
Cons ci ratio: 1.261956e-03	ci left: 9.962403e-01	ci right 9.975271e-01	k: 29908	n:30000
KS ci ratio: 7.998332e-01	ci left: 4.860610e-04	ci right 1.150156e-03	k: 23	n:30000
CHFR   30000 perm   6 sec   (4791 perm/sec)   p_kst 7.666667e-04   p_cons 9.969333e-01   p_joint 7.700000e-03

Joint ci ratio: 2.269980e-01	ci left: 6.559940e-03	ci right 8.262746e-03	k: 295	n:40000
Cons ci ratio: 1.024483e-03	ci left: 9.967411e-01	ci right 9.977846e-01	k: 39892	n:40000
KS ci ratio: 7.154134e-01	ci left: 4.855960e-04	ci right 1.041056e-03	k: 29	n:40000
CHFR   40000 perm   9 sec   (4555 perm/sec)   p_kst 7.250000e-04   p_cons 9.973000e-01   p_joint 7.375000e-03

Joint ci ratio: 2.801663e-01	ci left: 3.354051e-03	ci right 4.464768e-03	k: 194	n:50000
Cons ci ratio: 9.388242e-04	ci left: 9.966534e-01	ci right 9.976074e-01	k: 49858	n:50000
KS ci ratio: 6.623624e-01	ci left: 4.709643e-04	ci right 9.501034e-04	k: 34	n:50000
CHFR   50000 perm   11 sec   (4482 perm/sec)   p_kst 6.800000e-04   p_cons 9.971600e-01   p_joint 3.880000e-03

Joint ci ratio: 2.328815e-01	ci left: 4.152773e-03	ci right 5.262638e-03	k: 281	n:60000
Cons ci ratio: 8.826979e-04	ci left: 9.965112e-01	ci right 9.974063e-01	k: 59819	n:60000
KS ci ratio: 7.542283e-01	ci left: 2.830866e-04	ci right 6.348697e-04	k: 26	n:60000
CHFR   60000 perm   14 sec   (4396 perm/sec)   p_kst 4.333333e-04   p_cons 9.969833e-01   p_joint 4.683333e-03

Joint ci ratio: 2.313188e-01	ci left: 3.613220e-03	ci right 4.571464e-03	k: 285	n:70000
Cons ci ratio: 8.068648e-04	ci left: 9.966274e-01	ci right 9.974448e-01	k: 69794	n:70000
KS ci ratio: 6.822187e-01	ci left: 3.127057e-04	ci right 6.452886e-04	k: 32	n:70000
CHFR   70000 perm   16 sec   (4317 perm/sec)   p_kst 4.571429e-04   p_cons 9.970571e-01   p_joint 4.071429e-03

Joint ci ratio: 3.787048e-01	ci left: 1.084925e-03	ci right 1.602327e-03	k: 106	n:80000
Cons ci ratio: 7.506310e-04	ci left: 9.966892e-01	ci right 9.974490e-01	k: 79767	n:80000
KS ci ratio: 6.357530e-01	ci left: 3.256629e-04	ci right 6.374395e-04	k: 37	n:80000
CHFR   80000 perm   19 sec   (4246 perm/sec)   p_kst 4.625000e-04   p_cons 9.970875e-01   p_joint 1.325000e-03

Joint ci ratio: 4.898230e-01	ci left: 5.379398e-04	ci right 8.955165e-04	k: 63	n:90000
Cons ci ratio: 7.114019e-04	ci left: 9.966795e-01	ci right 9.973990e-01	k: 89735	n:90000
KS ci ratio: 5.976483e-01	ci left: 3.363523e-04	ci right 6.307460e-04	k: 42	n:90000
CHFR   90000 perm   22 sec   (4176 perm/sec)   p_kst 4.666667e-04   p_cons 9.970556e-01   p_joint 7.000000e-04

Joint ci ratio: 2.244843e-01	ci left: 2.698833e-03	ci right 3.390489e-03	k: 303	n:100000
Cons ci ratio: 6.580205e-04	ci left: 9.968526e-01	ci right 9.975180e-01	k: 99720	n:100000
KS ci ratio: 5.778366e-01	ci left: 3.282514e-04	ci right 6.020896e-04	k: 45	n:100000
CHFR   100000 perm   24 sec   (4102 perm/sec)   p_kst 4.500000e-04   p_cons 9.972000e-01   p_joint 3.030000e-03

Joint ci ratio: 2.252598e-01	ci left: 2.436289e-03	ci right 3.063113e-03	k: 301	n:110000
Cons ci ratio: 6.272975e-04	ci left: 9.968697e-01	ci right 9.975036e-01	k: 109692	n:110000
KS ci ratio: 5.716660e-01	ci left: 3.061774e-04	ci right 5.577570e-04	k: 46	n:110000
CHFR   110000 perm   27 sec   (4025 perm/sec)   p_kst 4.181818e-04   p_cons 9.972000e-01   p_joint 2.736364e-03

Joint ci ratio: 2.279496e-01	ci left: 2.178209e-03	ci right 2.746262e-03	k: 294	n:120000
Cons ci ratio: 6.031861e-04	ci left: 9.968582e-01	ci right 9.974674e-01	k: 119661	n:120000
KS ci ratio: 5.383322e-01	ci left: 3.236505e-04	ci right 5.682207e-04	k: 52	n:120000
CHFR   120000 perm   30 sec   (3956 perm/sec)   p_kst 4.333333e-04   p_cons 9.971750e-01   p_joint 2.450000e-03

Joint ci ratio: 2.283595e-01	ci left: 2.003380e-03	ci right 2.526910e-03	k: 293	n:130000
Cons ci ratio: 5.784706e-04	ci left: 9.968814e-01	ci right 9.974653e-01	k: 129634	n:130000
KS ci ratio: 5.237172e-01	ci left: 3.187348e-04	ci right 5.506576e-04	k: 55	n:130000
CHFR   130000 perm   33 sec   (3894 perm/sec)   p_kst 4.230769e-04   p_cons 9.971846e-01   p_joint 2.253846e-03

Joint ci ratio: 4.041799e-01	ci left: 5.361967e-04	ci right 8.137340e-04	k: 93	n:140000
Cons ci ratio: 5.207096e-04	ci left: 9.972694e-01	ci right 9.977954e-01	k: 139656	n:140000
KS ci ratio: 4.977285e-01	ci left: 3.333028e-04	ci right 5.596585e-04	k: 61	n:140000
CHFR   140000 perm   37 sec   (3821 perm/sec)   p_kst 4.357143e-04   p_cons 9.975429e-01   p_joint 6.642857e-04

Joint ci ratio: 3.842531e-01	ci left: 5.605131e-04	ci right 8.327222e-04	k: 103	n:150000
Cons ci ratio: 5.053388e-04	ci left: 9.972551e-01	ci right 9.977654e-01	k: 149628	n:150000
KS ci ratio: 4.718024e-01	ci left: 3.520477e-04	ci right 5.746731e-04	k: 68	n:150000
CHFR   150000 perm   40 sec   (3755 perm/sec)   p_kst 4.533333e-04   p_cons 9.975200e-01   p_joint 6.866667e-04

Joint ci ratio: 4.250694e-01	ci left: 4.187815e-04	ci right 6.499451e-04	k: 84	n:160000
Cons ci ratio: 4.856630e-04	ci left: 9.973019e-01	ci right 9.977922e-01	k: 159609	n:160000
KS ci ratio: 4.525351e-01	ci left: 3.631789e-04	ci right 5.805921e-04	k: 74	n:160000
CHFR   160000 perm   43 sec   (3701 perm/sec)   p_kst 4.625000e-04   p_cons 9.975563e-01   p_joint 5.250000e-04

Joint ci ratio: 1.833239e-01	ci left: 2.436448e-03	ci right 2.933694e-03	k: 455	n:170000
Cons ci ratio: 4.765192e-04	ci left: 9.972510e-01	ci right 9.977318e-01	k: 169575	n:170000
KS ci ratio: 4.466230e-01	ci left: 3.522472e-04	ci right 5.595293e-04	k: 76	n:170000
CHFR   170000 perm   47 sec   (3639 perm/sec)   p_kst 4.470588e-04   p_cons 9.975000e-01   p_joint 2.676471e-03

Joint ci ratio: 2.345017e-01	ci left: 1.368328e-03	ci right 1.736913e-03	k: 278	n:180000
Cons ci ratio: 4.620330e-04	ci left: 9.972699e-01	ci right 9.977360e-01	k: 179552	n:180000
KS ci ratio: 4.354563e-01	ci left: 3.524320e-04	ci right 5.531195e-04	k: 80	n:180000
CHFR   180000 perm   50 sec   (3577 perm/sec)   p_kst 4.444444e-04   p_cons 9.975111e-01   p_joint 1.544444e-03

Joint ci ratio: 2.528744e-01	ci left: 1.103544e-03	ci right 1.427770e-03	k: 239	n:190000
Cons ci ratio: 4.535256e-04	ci left: 9.972321e-01	ci right 9.976894e-01	k: 189519	n:190000
KS ci ratio: 4.226077e-01	ci left: 3.573572e-04	ci right 5.531487e-04	k: 85	n:190000
CHFR   190000 perm   54 sec   (3522 perm/sec)   p_kst 4.473684e-04   p_cons 9.974684e-01   p_joint 1.257895e-03

Joint ci ratio: 2.467806e-01	ci left: 1.104611e-03	ci right 1.420130e-03	k: 251	n:200000
Cons ci ratio: 4.440606e-04	ci left: 9.972139e-01	ci right 9.976615e-01	k: 199489	n:200000
KS ci ratio: 4.201756e-01	ci left: 3.439584e-04	ci right 5.310197e-04	k: 86	n:200000
CHFR   200000 perm   58 sec   (3469 perm/sec)   p_kst 4.300000e-04   p_cons 9.974450e-01   p_joint 1.255000e-03

Joint ci ratio: 3.824563e-01	ci left: 4.046628e-04	ci right 6.000324e-04	k: 104	n:210000
Cons ci ratio: 4.339244e-04	ci left: 9.972125e-01	ci right 9.976498e-01	k: 209462	n:210000
KS ci ratio: 4.085977e-01	ci left: 3.489069e-04	ci right 5.320111e-04	k: 91	n:210000
CHFR   210000 perm   61 sec   (3418 perm/sec)   p_kst 4.333333e-04   p_cons 9.974381e-01   p_joint 4.952381e-04

Joint ci ratio: 3.719752e-01	ci left: 4.109566e-04	ci right 6.026043e-04	k: 110	n:220000
Cons ci ratio: 4.233203e-04	ci left: 9.972256e-01	ci right 9.976521e-01	k: 219438	n:220000
KS ci ratio: 3.999951e-01	ci left: 3.493803e-04	ci right 5.278500e-04	k: 95	n:220000
CHFR   220000 perm   65 sec   (3367 perm/sec)   p_kst 4.318182e-04   p_cons 9.974455e-01   p_joint 5.000000e-04

Joint ci ratio: 3.670498e-01	ci left: 4.049209e-04	ci right 5.906540e-04	k: 113	n:230000
Cons ci ratio: 4.131010e-04	ci left: 9.972421e-01	ci right 9.976583e-01	k: 229415	n:230000
KS ci ratio: 3.938892e-01	ci left: 3.459311e-04	ci right 5.192393e-04	k: 98	n:230000
CHFR   230000 perm   69 sec   (3319 perm/sec)   p_kst 4.260870e-04   p_cons 9.974565e-01   p_joint 4.913043e-04

Joint ci ratio: 3.719831e-01	ci left: 3.767089e-04	ci right 5.523896e-04	k: 110	n:240000
Cons ci ratio: 4.062299e-04	ci left: 9.972227e-01	ci right 9.976318e-01	k: 239384	n:240000
KS ci ratio: 3.861654e-01	ci left: 3.465496e-04	ci right 5.158975e-04	k: 102	n:240000
CHFR   240000 perm   73 sec   (3270 perm/sec)   p_kst 4.250000e-04   p_cons 9.974333e-01   p_joint 4.583333e-04

Joint ci ratio: 2.388775e-01	ci left: 9.475427e-04	ci right 1.208247e-03	k: 268	n:250000
Cons ci ratio: 4.021279e-04	ci left: 9.971717e-01	ci right 9.975766e-01	k: 249345	n:250000
KS ci ratio: 3.771199e-01	ci left: 3.507692e-04	ci right 5.171711e-04	k: 107	n:250000
CHFR   250000 perm   77 sec   (3227 perm/sec)   p_kst 4.280000e-04   p_cons 9.973800e-01   p_joint 1.072000e-03

Joint ci ratio: 3.324005e-01	ci left: 4.459293e-04	ci right 6.270457e-04	k: 138	n:260000
Cons ci ratio: 3.962729e-04	ci left: 9.971488e-01	ci right 9.975477e-01	k: 259312	n:260000
KS ci ratio: 3.736775e-01	ci left: 3.442443e-04	ci right 5.056952e-04	k: 109	n:260000
CHFR   260000 perm   82 sec   (3184 perm/sec)   p_kst 4.192308e-04   p_cons 9.973538e-01   p_joint 5.307692e-04

Joint ci ratio: 3.300367e-01	ci left: 4.362045e-04	ci right 6.118436e-04	k: 140	n:270000
Cons ci ratio: 3.881836e-04	ci left: 9.971622e-01	ci right 9.975529e-01	k: 269288	n:270000
KS ci ratio: 3.703277e-01	ci left: 3.382092e-04	ci right 4.950630e-04	k: 111	n:270000
CHFR   270000 perm   86 sec   (3141 perm/sec)   p_kst 4.111111e-04   p_cons 9.973630e-01   p_joint 5.185185e-04

Joint ci ratio: 3.254534e-01	ci left: 4.337361e-04	ci right 6.054492e-04	k: 144	n:280000
Cons ci ratio: 3.831462e-04	ci left: 9.971378e-01	ci right 9.975233e-01	k: 279254	n:280000
KS ci ratio: 3.638868e-01	ci left: 3.390983e-04	ci right 4.929800e-04	k: 115	n:280000
CHFR   280000 perm   90 sec   (3098 perm/sec)   p_kst 4.107143e-04   p_cons 9.973357e-01   p_joint 5.142857e-04

Joint ci ratio: 3.178701e-01	ci left: 4.409694e-04	ci right 6.106513e-04	k: 151	n:290000
Cons ci ratio: 3.760727e-04	ci left: 9.971472e-01	ci right 9.975255e-01	k: 289229	n:290000
KS ci ratio: 3.533789e-01	ci left: 3.493692e-04	ci right 5.022835e-04	k: 122	n:290000
CHFR   290000 perm   95 sec   (3055 perm/sec)   p_kst 4.206897e-04   p_cons 9.973414e-01   p_joint 5.206897e-04

Joint ci ratio: 2.300787e-01	ci left: 8.555035e-04	ci right 1.080982e-03	k: 289	n:300000
Cons ci ratio: 3.686777e-04	ci left: 9.971664e-01	ci right 9.975372e-01	k: 299207	n:300000
KS ci ratio: 3.450620e-01	ci left: 3.559698e-04	ci right 5.072876e-04	k: 128	n:300000
CHFR   300000 perm   100 sec   (3009 perm/sec)   p_kst 4.266667e-04   p_cons 9.973567e-01   p_joint 9.633333e-04

Joint ci ratio: 3.137717e-01	ci left: 4.243997e-04	ci right 5.851780e-04	k: 155	n:310000
Cons ci ratio: 3.639069e-04	ci left: 9.971510e-01	ci right 9.975170e-01	k: 309175	n:310000
KS ci ratio: 3.373059e-01	ci left: 3.621839e-04	ci right 5.119299e-04	k: 134	n:310000
CHFR   310000 perm   105 sec   (2966 perm/sec)   p_kst 4.322581e-04   p_cons 9.973387e-01   p_joint 5.000000e-04

Joint ci ratio: 3.069594e-01	ci left: 4.313091e-04	ci right 5.904640e-04	k: 162	n:320000
Cons ci ratio: 3.584610e-04	ci left: 9.971496e-01	ci right 9.975101e-01	k: 319147	n:320000
KS ci ratio: 3.312275e-01	ci left: 3.651795e-04	ci right 5.128635e-04	k: 139	n:320000
CHFR   320000 perm   109 sec   (2927 perm/sec)   p_kst 4.343750e-04   p_cons 9.973344e-01   p_joint 5.062500e-04

Joint ci ratio: 3.023571e-01	ci left: 4.322326e-04	ci right 5.888772e-04	k: 167	n:330000
Cons ci ratio: 3.532517e-04	ci left: 9.971483e-01	ci right 9.975035e-01	k: 329119	n:330000
KS ci ratio: 3.254663e-01	ci left: 3.680163e-04	ci right 5.137180e-04	k: 144	n:330000
CHFR   330000 perm   114 sec   (2888 perm/sec)   p_kst 4.363636e-04   p_cons 9.973303e-01   p_joint 5.060606e-04

Joint ci ratio: 3.088657e-01	ci left: 4.005090e-04	ci right 5.493970e-04	k: 160	n:340000
Cons ci ratio: 3.777290e-04	ci left: 9.966619e-01	ci right 9.970413e-01	k: 338931	n:340000
KS ci ratio: 3.210681e-01	ci left: 3.680025e-04	ci right 5.113248e-04	k: 148	n:340000
CHFR   340000 perm   120 sec   (2844 perm/sec)   p_kst 4.352941e-04   p_cons 9.968559e-01   p_joint 4.705882e-04

Joint ci ratio: 2.929192e-01	ci left: 4.366164e-04	ci right 5.889948e-04	k: 178	n:350000
Cons ci ratio: 3.744120e-04	ci left: 9.966279e-01	ci right 9.970038e-01	k: 348887	n:350000
KS ci ratio: 3.147918e-01	ci left: 3.732635e-04	ci right 5.152214e-04	k: 154	n:350000
CHFR   350000 perm   125 sec   (2806 perm/sec)   p_kst 4.400000e-04   p_cons 9.968200e-01   p_joint 5.085714e-04

Joint ci ratio: 2.889120e-01	ci left: 4.373637e-04	ci right 5.875333e-04	k: 183	n:360000
Cons ci ratio: 3.682321e-04	ci left: 9.966472e-01	ci right 9.970169e-01	k: 358861	n:360000
KS ci ratio: 3.108071e-01	ci left: 3.731340e-04	ci right 5.128902e-04	k: 158	n:360000
CHFR   360000 perm   130 sec   (2771 perm/sec)   p_kst 4.388889e-04   p_cons 9.968361e-01   p_joint 5.083333e-04

Joint ci ratio: 2.873557e-01	ci left: 4.305577e-04	ci right 5.774493e-04	k: 185	n:370000
Cons ci ratio: 3.632738e-04	ci left: 9.966489e-01	ci right 9.970136e-01	k: 368829	n:370000
KS ci ratio: 3.088716e-01	ci left: 3.680343e-04	ci right 5.048529e-04	k: 160	n:370000
CHFR   370000 perm   135 sec   (2738 perm/sec)   p_kst 4.324324e-04   p_cons 9.968351e-01   p_joint 5.000000e-04

Joint ci ratio: 2.843152e-01	ci left: 4.289989e-04	ci right 5.735323e-04	k: 189	n:380000
Cons ci ratio: 3.582117e-04	ci left: 9.966559e-01	ci right 9.970155e-01	k: 378799	n:380000
KS ci ratio: 3.060341e-01	ci left: 3.656349e-04	ci right 5.000693e-04	k: 163	n:380000
CHFR   380000 perm   141 sec   (2704 perm/sec)   p_kst 4.289474e-04   p_cons 9.968395e-01   p_joint 4.973684e-04

Joint ci ratio: 1.531554e-01	ci left: 1.548478e-03	ci right 1.807734e-03	k: 653	n:390000
Cons ci ratio: 3.520578e-04	ci left: 9.966862e-01	ci right 9.970397e-01	k: 388778	n:390000
KS ci ratio: 3.032734e-01	ci left: 3.633639e-04	ci right 4.955257e-04	k: 166	n:390000
CHFR   390000 perm   146 sec   (2672 perm/sec)   p_kst 4.256410e-04   p_cons 9.968667e-01   p_joint 1.674359e-03

Joint ci ratio: 1.521138e-01	ci left: 1.531406e-03	ci right 1.785901e-03	k: 662	n:400000
Cons ci ratio: 3.473012e-04	ci left: 9.966946e-01	ci right 9.970432e-01	k: 398749	n:400000
KS ci ratio: 3.005860e-01	ci left: 3.612117e-04	ci right 4.912041e-04	k: 169	n:400000
CHFR   400000 perm   151 sec   (2642 perm/sec)   p_kst 4.225000e-04   p_cons 9.968725e-01   p_joint 1.655000e-03

Joint ci ratio: 1.512059e-01	ci left: 1.512825e-03	ci right 1.762596e-03	k: 670	n:410000
Cons ci ratio: 3.429995e-04	ci left: 9.966975e-01	ci right 9.970418e-01	k: 408718	n:410000
KS ci ratio: 2.997070e-01	ci left: 3.546568e-04	ci right 4.818459e-04	k: 170	n:410000
CHFR   410000 perm   157 sec   (2614 perm/sec)   p_kst 4.146341e-04   p_cons 9.968732e-01   p_joint 1.634146e-03

Joint ci ratio: 1.488931e-01	ci left: 1.524929e-03	ci right 1.772504e-03	k: 691	n:420000
Cons ci ratio: 3.392416e-04	ci left: 9.966930e-01	ci right 9.970334e-01	k: 418684	n:420000
KS ci ratio: 2.945828e-01	ci left: 3.594337e-04	ci right 4.857207e-04	k: 176	n:420000
CHFR   420000 perm   163 sec   (2583 perm/sec)   p_kst 4.190476e-04   p_cons 9.968667e-01   p_joint 1.645238e-03

Joint ci ratio: 1.579564e-01	ci left: 1.317253e-03	ci right 1.545364e-03	k: 614	n:430000
Cons ci ratio: 3.351044e-04	ci left: 9.966982e-01	ci right 9.970345e-01	k: 428654	n:430000
KS ci ratio: 2.921180e-01	ci left: 3.575382e-04	ci right 4.819136e-04	k: 179	n:430000
CHFR   430000 perm   168 sec   (2553 perm/sec)   p_kst 4.162791e-04   p_cons 9.968698e-01   p_joint 1.427907e-03

Joint ci ratio: 1.601916e-01	ci left: 1.250213e-03	ci right 1.470074e-03	k: 597	n:440000
Cons ci ratio: 3.318376e-04	ci left: 9.966893e-01	ci right 9.970223e-01	k: 438618	n:440000
KS ci ratio: 2.921194e-01	ci left: 3.494121e-04	ci right 4.709614e-04	k: 179	n:440000
CHFR   440000 perm   174 sec   (2525 perm/sec)   p_kst 4.068182e-04   p_cons 9.968591e-01   p_joint 1.356818e-03

Joint ci ratio: 1.588694e-01	ci left: 1.243766e-03	ci right 1.460514e-03	k: 607	n:450000
Cons ci ratio: 3.279632e-04	ci left: 9.966945e-01	ci right 9.970235e-01	k: 448588	n:450000
KS ci ratio: 2.889268e-01	ci left: 3.498886e-04	ci right 4.700304e-04	k: 183	n:450000
CHFR   450000 perm   180 sec   (2497 perm/sec)   p_kst 4.066667e-04   p_cons 9.968622e-01   p_joint 1.348889e-03

Joint ci ratio: 1.640888e-01	ci left: 1.137451e-03	ci right 1.342827e-03	k: 569	n:460000
Cons ci ratio: 3.244464e-04	ci left: 9.966950e-01	ci right 9.970205e-01	k: 458556	n:460000
KS ci ratio: 2.858366e-01	ci left: 3.503513e-04	ci right 4.691330e-04	k: 187	n:460000
CHFR   460000 perm   186 sec   (2469 perm/sec)   p_kst 4.065217e-04   p_cons 9.968609e-01   p_joint 1.236957e-03

Joint ci ratio: 1.616945e-01	ci left: 1.147946e-03	ci right 1.351899e-03	k: 586	n:470000
Cons ci ratio: 3.219114e-04	ci left: 9.966780e-01	ci right 9.970009e-01	k: 468516	n:470000
KS ci ratio: 2.821095e-01	ci left: 3.527778e-04	ci right 4.705452e-04	k: 192	n:470000
CHFR   470000 perm   193 sec   (2441 perm/sec)   p_kst 4.085106e-04   p_cons 9.968426e-01   p_joint 1.246809e-03

Joint ci ratio: 1.606045e-01	ci left: 1.140024e-03	ci right 1.341074e-03	k: 594	n:480000
Cons ci ratio: 3.193196e-04	ci left: 9.966639e-01	ci right 9.969842e-01	k: 478477	n:480000
KS ci ratio: 2.792308e-01	ci left: 3.531752e-04	ci right 4.696605e-04	k: 196	n:480000
CHFR   480000 perm   199 sec   (2414 perm/sec)   p_kst 4.083333e-04   p_cons 9.968271e-01   p_joint 1.237500e-03

Joint ci ratio: 1.595363e-01	ci left: 1.132431e-03	ci right 1.330685e-03	k: 602	n:490000
Cons ci ratio: 3.166807e-04	ci left: 9.966525e-01	ci right 9.969701e-01	k: 488439	n:490000
KS ci ratio: 2.778247e-01	ci left: 3.497640e-04	ci right 4.644417e-04	k: 198	n:490000
CHFR   490000 perm   205 sec   (2390 perm/sec)   p_kst 4.040816e-04   p_cons 9.968143e-01   p_joint 1.228571e-03

Joint ci ratio: 1.584891e-01	ci left: 1.125145e-03	ci right 1.320708e-03	k: 610	n:500000
Cons ci ratio: 3.140029e-04	ci left: 9.966436e-01	ci right 9.969586e-01	k: 498402	n:500000
KS ci ratio: 2.764396e-01	ci left: 3.464907e-04	ci right 4.594303e-04	k: 200	n:500000
CHFR   500000 perm   212 sec   (2364 perm/sec)   p_kst 4.000000e-04   p_cons 9.968040e-01   p_joint 1.220000e-03

Joint ci ratio: 1.701853e-01	ci left: 9.507761e-04	ci right 1.129480e-03	k: 529	n:510000
Cons ci ratio: 3.111979e-04	ci left: 9.966391e-01	ci right 9.969512e-01	k: 508367	n:510000
KS ci ratio: 2.724033e-01	ci left: 3.506522e-04	ci right 4.629939e-04	k: 206	n:510000
CHFR   510000 perm   218 sec   (2340 perm/sec)   p_kst 4.039216e-04   p_cons 9.967980e-01   p_joint 1.037255e-03

Joint ci ratio: 1.686022e-01	ci left: 9.509075e-04	ci right 1.127804e-03	k: 539	n:520000
Cons ci ratio: 3.076302e-04	ci left: 9.966526e-01	ci right 9.969611e-01	k: 518341	n:520000
KS ci ratio: 2.698089e-01	ci left: 3.510784e-04	ci right 4.623040e-04	k: 210	n:520000
CHFR   520000 perm   225 sec   (2315 perm/sec)   p_kst 4.038462e-04   p_cons 9.968096e-01   p_joint 1.036538e-03

Joint ci ratio: 1.666082e-01	ci left: 9.564655e-04	ci right 1.132081e-03	k: 552	n:530000
Cons ci ratio: 3.047212e-04	ci left: 9.966539e-01	ci right 9.969595e-01	k: 528309	n:530000
KS ci ratio: 2.666676e-01	ci left: 3.532539e-04	ci right 4.636481e-04	k: 215	n:530000
CHFR   530000 perm   231 sec   (2291 perm/sec)   p_kst 4.056604e-04   p_cons 9.968094e-01   p_joint 1.041509e-03

Joint ci ratio: 1.714906e-01	ci left: 8.837712e-04	ci right 1.051287e-03	k: 521	n:540000
Cons ci ratio: 3.016296e-04	ci left: 9.966609e-01	ci right 9.969634e-01	k: 538280	n:540000
KS ci ratio: 2.648351e-01	ci left: 3.518976e-04	ci right 4.609869e-04	k: 218	n:540000
CHFR   540000 perm   238 sec   (2267 perm/sec)   p_kst 4.037037e-04   p_cons 9.968148e-01   p_joint 9.648148e-04

Joint ci ratio: 1.703526e-01	ci left: 8.798853e-04	ci right 1.045444e-03	k: 528	n:550000
Cons ci ratio: 2.990570e-04	ci left: 9.966583e-01	ci right 9.969582e-01	k: 548246	n:550000
KS ci ratio: 2.636345e-01	ci left: 3.488949e-04	ci right 4.564821e-04	k: 220	n:550000
CHFR   550000 perm   245 sec   (2244 perm/sec)   p_kst 4.000000e-04   p_cons 9.968109e-01   p_joint 9.600000e-04

Joint ci ratio: 1.909771e-01	ci left: 6.800019e-04	ci right 8.252434e-04	k: 420	n:560000
Cons ci ratio: 2.957161e-04	ci left: 9.966742e-01	ci right 9.969707e-01	k: 558222	n:560000
KS ci ratio: 2.612806e-01	ci left: 3.493376e-04	ci right 4.559423e-04	k: 224	n:560000
CHFR   560000 perm   252 sec   (2221 perm/sec)   p_kst 4.000000e-04   p_cons 9.968250e-01   p_joint 7.500000e-04

Joint ci ratio: 1.903010e-01	ci left: 6.730838e-04	ci right 8.162798e-04	k: 423	n:570000
Cons ci ratio: 2.933730e-04	ci left: 9.966697e-01	ci right 9.969638e-01	k: 568187	n:570000
KS ci ratio: 2.595562e-01	ci left: 3.481285e-04	ci right 4.535494e-04	k: 227	n:570000
CHFR   570000 perm   260 sec   (2196 perm/sec)   p_kst 3.982456e-04   p_cons 9.968193e-01   p_joint 7.421053e-04

Joint ci ratio: 1.883127e-01	ci left: 6.762609e-04	ci right 8.184577e-04	k: 432	n:580000
Cons ci ratio: 2.902139e-04	ci left: 9.966848e-01	ci right 9.969757e-01	k: 578163	n:580000
KS ci ratio: 2.567559e-01	ci left: 3.501892e-04	ci right 4.549067e-04	k: 232	n:580000
CHFR   580000 perm   267 sec   (2175 perm/sec)   p_kst 4.000000e-04   p_cons 9.968328e-01   p_joint 7.448276e-04

Joint ci ratio: 2.380681e-01	ci left: 4.046745e-04	ci right 5.155809e-04	k: 270	n:590000
Cons ci ratio: 2.876907e-04	ci left: 9.966872e-01	ci right 9.969757e-01	k: 588132	n:590000
KS ci ratio: 2.551190e-01	ci left: 3.490124e-04	ci right 4.526067e-04	k: 235	n:590000
CHFR   590000 perm   274 sec   (2154 perm/sec)   p_kst 3.983051e-04   p_cons 9.968339e-01   p_joint 4.576271e-04

Joint ci ratio: 1.582463e-01	ci left: 9.408151e-04	ci right 1.104064e-03	k: 612	n:600000
Cons ci ratio: 2.853827e-04	ci left: 9.966862e-01	ci right 9.969723e-01	k: 598099	n:600000
KS ci ratio: 2.545809e-01	ci left: 3.447556e-04	ci right 4.468363e-04	k: 236	n:600000
CHFR   600000 perm   281 sec   (2133 perm/sec)   p_kst 3.933333e-04   p_cons 9.968317e-01   p_joint 1.020000e-03

Joint ci ratio: 1.567195e-01	ci left: 9.442889e-04	ci right 1.106412e-03	k: 624	n:610000
Cons ci ratio: 2.826886e-04	ci left: 9.966953e-01	ci right 9.969787e-01	k: 608072	n:610000
KS ci ratio: 2.529849e-01	ci left: 3.437091e-04	ci right 4.447414e-04	k: 239	n:610000
CHFR   610000 perm   289 sec   (2112 perm/sec)   p_kst 3.918033e-04   p_cons 9.968393e-01   p_joint 1.022951e-03

Joint ci ratio: 1.424820e-01	ci left: 1.132465e-03	ci right 1.307733e-03	k: 755	n:620000
Cons ci ratio: 2.802114e-04	ci left: 9.967008e-01	ci right 9.969817e-01	k: 618043	n:620000
KS ci ratio: 2.509027e-01	ci left: 3.442097e-04	ci right 4.444262e-04	k: 243	n:620000
CHFR   620000 perm   296 sec   (2093 perm/sec)   p_kst 3.919355e-04   p_cons 9.968435e-01   p_joint 1.217742e-03

Joint ci ratio: 1.414567e-01	ci left: 1.131329e-03	ci right 1.305055e-03	k: 766	n:630000
Cons ci ratio: 2.788476e-04	ci left: 9.966818e-01	ci right 9.969613e-01	k: 627999	n:630000
KS ci ratio: 2.498811e-01	ci left: 3.417214e-04	ci right 4.407453e-04	k: 245	n:630000
CHFR   630000 perm   304 sec   (2073 perm/sec)   p_kst 3.888889e-04   p_cons 9.968238e-01   p_joint 1.215873e-03

Joint ci ratio: 1.535586e-01	ci left: 9.390732e-04	ci right 1.096750e-03	k: 650	n:640000
Cons ci ratio: 2.764710e-04	ci left: 9.966873e-01	ci right 9.969644e-01	k: 637970	n:640000
KS ci ratio: 2.493753e-01	ci left: 3.378467e-04	ci right 4.355189e-04	k: 246	n:640000
CHFR   640000 perm   312 sec   (2053 perm/sec)   p_kst 3.843750e-04   p_cons 9.968281e-01   p_joint 1.015625e-03

Joint ci ratio: 1.270885e-01	ci left: 1.368637e-03	ci right 1.555851e-03	k: 949	n:650000
Cons ci ratio: 2.746205e-04	ci left: 9.966817e-01	ci right 9.969569e-01	k: 647934	n:650000
KS ci ratio: 2.468887e-01	ci left: 3.398631e-04	ci right 4.369882e-04	k: 251	n:650000
CHFR   650000 perm   320 sec   (2034 perm/sec)   p_kst 3.861538e-04   p_cons 9.968215e-01   p_joint 1.460000e-03

Joint ci ratio: 1.351667e-01	ci left: 1.186688e-03	ci right 1.360161e-03	k: 839	n:660000
Cons ci ratio: 2.720888e-04	ci left: 9.966933e-01	ci right 9.969660e-01	k: 657909	n:660000
KS ci ratio: 2.435290e-01	ci left: 3.446682e-04	ci right 4.416234e-04	k: 258	n:660000
CHFR   660000 perm   327 sec   (2016 perm/sec)   p_kst 3.909091e-04   p_cons 9.968318e-01   p_joint 1.271212e-03

Joint ci ratio: 1.342904e-01	ci left: 1.184841e-03	ci right 1.356831e-03	k: 850	n:670000
Cons ci ratio: 2.701975e-04	ci left: 9.966908e-01	ci right 9.969616e-01	k: 667875	n:670000
KS ci ratio: 2.416699e-01	ci left: 3.451311e-04	ci right 4.413644e-04	k: 262	n:670000
CHFR   670000 perm   335 sec   (1998 perm/sec)   p_kst 3.910448e-04   p_cons 9.968284e-01   p_joint 1.268657e-03

Joint ci ratio: 1.332763e-01	ci left: 1.185895e-03	ci right 1.356635e-03	k: 863	n:680000
Cons ci ratio: 2.685940e-04	ci left: 9.966824e-01	ci right 9.969516e-01	k: 677837	n:680000
KS ci ratio: 2.394047e-01	ci left: 3.469655e-04	ci right 4.426689e-04	k: 267	n:680000
CHFR   680000 perm   344 sec   (1979 perm/sec)   p_kst 3.926471e-04   p_cons 9.968191e-01   p_joint 1.269118e-03

Joint ci ratio: 1.430602e-01	ci left: 1.009188e-03	ci right 1.166064e-03	k: 749	n:690000
Cons ci ratio: 2.662247e-04	ci left: 9.966935e-01	ci right 9.969603e-01	k: 687812	n:690000
KS ci ratio: 2.385168e-01	ci left: 3.446620e-04	ci right 4.393253e-04	k: 269	n:690000
CHFR   690000 perm   352 sec   (1960 perm/sec)   p_kst 3.898551e-04   p_cons 9.968290e-01   p_joint 1.085507e-03

Joint ci ratio: 1.419292e-01	ci left: 1.011302e-03	ci right 1.167159e-03	k: 761	n:700000
Cons ci ratio: 2.635555e-04	ci left: 9.967130e-01	ci right 9.969771e-01	k: 697793	n:700000
KS ci ratio: 2.367693e-01	ci left: 3.451123e-04	ci right 4.391031e-04	k: 273	n:700000
CHFR   700000 perm   360 sec   (1943 perm/sec)   p_kst 3.900000e-04   p_cons 9.968471e-01   p_joint 1.087143e-03

Joint ci ratio: 1.410071e-01	ci left: 1.010645e-03	ci right 1.165303e-03	k: 771	n:710000
Cons ci ratio: 2.614265e-04	ci left: 9.967205e-01	ci right 9.969825e-01	k: 707766	n:710000
KS ci ratio: 2.350598e-01	ci left: 3.455524e-04	ci right 4.388847e-04	k: 277	n:710000
CHFR   710000 perm   368 sec   (1927 perm/sec)   p_kst 3.901408e-04   p_cons 9.968535e-01   p_joint 1.085915e-03

Joint ci ratio: 1.406438e-01	ci left: 1.001967e-03	ci right 1.154870e-03	k: 775	n:720000
Cons ci ratio: 2.600938e-04	ci left: 9.967093e-01	ci right 9.969700e-01	k: 717726	n:720000
KS ci ratio: 2.338018e-01	ci left: 3.446750e-04	ci right 4.372001e-04	k: 280	n:720000
CHFR   720000 perm   377 sec   (1910 perm/sec)   p_kst 3.888889e-04   p_cons 9.968417e-01   p_joint 1.076389e-03

Joint ci ratio: 1.398355e-01	ci left: 1.000138e-03	ci right 1.151811e-03	k: 784	n:730000
Cons ci ratio: 2.590019e-04	ci left: 9.966929e-01	ci right 9.969524e-01	k: 727682	n:730000
KS ci ratio: 2.329745e-01	ci left: 3.425330e-04	ci right 4.341107e-04	k: 282	n:730000
CHFR   730000 perm   386 sec   (1893 perm/sec)   p_kst 3.863014e-04   p_cons 9.968247e-01   p_joint 1.073973e-03

Joint ci ratio: 2.150895e-01	ci left: 4.004118e-04	ci right 4.981627e-04	k: 331	n:740000
Cons ci ratio: 2.569292e-04	ci left: 9.967018e-01	ci right 9.969592e-01	k: 737656	n:740000
KS ci ratio: 2.317495e-01	ci left: 3.417222e-04	ci right 4.325340e-04	k: 285	n:740000
CHFR   740000 perm   394 sec   (1878 perm/sec)   p_kst 3.851351e-04   p_cons 9.968324e-01   p_joint 4.472973e-04

Joint ci ratio: 2.134879e-01	ci left: 4.013819e-04	ci right 4.985444e-04	k: 336	n:750000
Cons ci ratio: 2.550657e-04	ci left: 9.967063e-01	ci right 9.969618e-01	k: 747627	n:750000
KS ci ratio: 2.297497e-01	ci left: 3.434472e-04	ci right 4.338182e-04	k: 290	n:750000
CHFR   750000 perm   403 sec   (1861 perm/sec)   p_kst 3.866667e-04   p_cons 9.968360e-01   p_joint 4.480000e-04

Joint ci ratio: 2.113043e-01	ci left: 4.048212e-04	ci right 5.016842e-04	k: 343	n:760000
Cons ci ratio: 2.534005e-04	ci left: 9.967067e-01	ci right 9.969606e-01	k: 757595	n:760000
KS ci ratio: 2.270348e-01	ci left: 3.476119e-04	ci right 4.378465e-04	k: 297	n:760000
CHFR   760000 perm   412 sec   (1844 perm/sec)   p_kst 3.907895e-04   p_cons 9.968355e-01   p_joint 4.513158e-04

Joint ci ratio: 2.094851e-01	ci left: 4.069455e-04	ci right 5.033709e-04	k: 349	n:770000
Cons ci ratio: 2.513526e-04	ci left: 9.967177e-01	ci right 9.969695e-01	k: 767571	n:770000
KS ci ratio: 2.251537e-01	ci left: 3.492232e-04	ci right 4.390208e-04	k: 302	n:770000
CHFR   770000 perm   421 sec   (1829 perm/sec)   p_kst 3.922078e-04   p_cons 9.968455e-01   p_joint 4.532468e-04

Joint ci ratio: 2.077120e-01	ci left: 4.090188e-04	ci right 5.050110e-04	k: 355	n:780000
Cons ci ratio: 2.497587e-04	ci left: 9.967179e-01	ci right 9.969681e-01	k: 777539	n:780000
KS ci ratio: 2.229567e-01	ci left: 3.520067e-04	ci right 4.415156e-04	k: 308	n:780000
CHFR   780000 perm   430 sec   (1814 perm/sec)   p_kst 3.948718e-04   p_cons 9.968449e-01   p_joint 4.551282e-04

Joint ci ratio: 2.048541e-01	ci left: 4.158459e-04	ci right 5.119294e-04	k: 365	n:790000
Cons ci ratio: 2.480449e-04	ci left: 9.967220e-01	ci right 9.969705e-01	k: 787510	n:790000
KS ci ratio: 2.208228e-01	ci left: 3.547238e-04	ci right 4.439431e-04	k: 314	n:790000
CHFR   790000 perm   439 sec   (1799 perm/sec)   p_kst 3.974684e-04   p_cons 9.968481e-01   p_joint 4.620253e-04

Joint ci ratio: 2.037438e-01	ci left: 4.153921e-04	ci right 5.107857e-04	k: 369	n:800000
Cons ci ratio: 2.463656e-04	ci left: 9.967260e-01	ci right 9.969728e-01	k: 797481	n:800000
KS ci ratio: 2.194340e-01	ci left: 3.550141e-04	ci right 4.436690e-04	k: 318	n:800000
CHFR   800000 perm   448 sec   (1785 perm/sec)   p_kst 3.975000e-04   p_cons 9.968512e-01   p_joint 4.612500e-04

Joint ci ratio: 2.023809e-01	ci left: 4.161228e-04	ci right 5.109660e-04	k: 374	n:810000
Cons ci ratio: 2.448642e-04	ci left: 9.967262e-01	ci right 9.969715e-01	k: 807449	n:810000
KS ci ratio: 2.184095e-01	ci left: 3.541318e-04	ci right 4.420981e-04	k: 321	n:810000
CHFR   810000 perm   458 sec   (1770 perm/sec)   p_kst 3.962963e-04   p_cons 9.968506e-01   p_joint 4.617284e-04

Joint ci ratio: 2.010450e-01	ci left: 4.168377e-04	ci right 5.111398e-04	k: 379	n:820000
Cons ci ratio: 2.433899e-04	ci left: 9.967263e-01	ci right 9.969701e-01	k: 817417	n:820000
KS ci ratio: 2.170654e-01	ci left: 3.544252e-04	ci right 4.418503e-04	k: 325	n:820000
CHFR   820000 perm   467 sec   (1756 perm/sec)   p_kst 3.963415e-04   p_cons 9.968500e-01   p_joint 4.621951e-04

Joint ci ratio: 2.005184e-01	ci left: 4.141040e-04	ci right 5.075122e-04	k: 381	n:830000
Cons ci ratio: 2.426367e-04	ci left: 9.967081e-01	ci right 9.969511e-01	k: 827370	n:830000
KS ci ratio: 2.167337e-01	ci left: 3.512943e-04	ci right 4.377971e-04	k: 326	n:830000
CHFR   830000 perm   477 sec   (1742 perm/sec)   p_kst 3.927711e-04   p_cons 9.968313e-01   p_joint 4.590361e-04

Joint ci ratio: 1.994768e-01	ci left: 4.136976e-04	ci right 5.064704e-04	k: 385	n:840000
Cons ci ratio: 2.416557e-04	ci left: 9.966963e-01	ci right 9.969383e-01	k: 837328	n:840000
KS ci ratio: 2.157464e-01	ci left: 3.504902e-04	ci right 4.363498e-04	k: 329	n:840000
CHFR   840000 perm   486 sec   (1728 perm/sec)   p_kst 3.916667e-04   p_cons 9.968190e-01   p_joint 4.583333e-04

Joint ci ratio: 1.992193e-01	ci left: 4.099483e-04	ci right 5.017472e-04	k: 386	n:850000
Cons ci ratio: 2.402380e-04	ci left: 9.966968e-01	ci right 9.969374e-01	k: 847296	n:850000
KS ci ratio: 2.154206e-01	ci left: 3.474797e-04	ci right 4.324562e-04	k: 330	n:850000
CHFR   850000 perm   496 sec   (1715 perm/sec)   p_kst 3.882353e-04   p_cons 9.968188e-01   p_joint 4.541176e-04

Joint ci ratio: 1.976925e-01	ci left: 4.118116e-04	ci right 5.032358e-04	k: 392	n:860000
Cons ci ratio: 2.387573e-04	ci left: 9.966997e-01	ci right 9.969388e-01	k: 857266	n:860000
KS ci ratio: 2.134940e-01	ci left: 3.500413e-04	ci right 4.347785e-04	k: 336	n:860000
CHFR   860000 perm   506 sec   (1701 perm/sec)   p_kst 3.906977e-04   p_cons 9.968209e-01   p_joint 4.558140e-04

Joint ci ratio: 1.969425e-01	ci left: 4.103560e-04	ci right 5.010700e-04	k: 395	n:870000
Cons ci ratio: 2.371314e-04	ci left: 9.967072e-01	ci right 9.969447e-01	k: 867240	n:870000
KS ci ratio: 2.128636e-01	ci left: 3.481939e-04	ci right 4.322025e-04	k: 338	n:870000
CHFR   870000 perm   516 sec   (1685 perm/sec)   p_kst 3.885057e-04   p_cons 9.968276e-01   p_joint 4.540230e-04

Joint ci ratio: 1.954671e-01	ci left: 4.121761e-04	ci right 5.025286e-04	k: 401	n:880000
Cons ci ratio: 2.357490e-04	ci left: 9.967087e-01	ci right 9.969448e-01	k: 877209	n:880000
KS ci ratio: 2.110042e-01	ci left: 3.506936e-04	ci right 4.344706e-04	k: 344	n:880000
CHFR   880000 perm   526 sec   (1672 perm/sec)   p_kst 3.909091e-04   p_cons 9.968284e-01   p_joint 4.556818e-04

Joint ci ratio: 1.947419e-01	ci left: 4.107511e-04	ci right 5.004175e-04	k: 404	n:890000
Cons ci ratio: 2.345571e-04	ci left: 9.967056e-01	ci right 9.969405e-01	k: 887174	n:890000
KS ci ratio: 2.100929e-01	ci left: 3.499462e-04	ci right 4.331371e-04	k: 347	n:890000
CHFR   890000 perm   536 sec   (1659 perm/sec)   p_kst 3.898876e-04   p_cons 9.968247e-01   p_joint 4.539326e-04

Joint ci ratio: 2.043022e-01	ci left: 3.671277e-04	ci right 4.516975e-04	k: 367	n:900000
Cons ci ratio: 2.331782e-04	ci left: 9.967083e-01	ci right 9.969418e-01	k: 897144	n:900000
KS ci ratio: 2.094920e-01	ci left: 3.481634e-04	ci right 4.306634e-04	k: 349	n:900000
CHFR   900000 perm   546 sec   (1647 perm/sec)   p_kst 3.877778e-04   p_cons 9.968267e-01   p_joint 4.077778e-04

Joint ci ratio: 2.032009e-01	ci left: 3.672647e-04	ci right 4.513533e-04	k: 371	n:910000
Cons ci ratio: 2.317829e-04	ci left: 9.967120e-01	ci right 9.969441e-01	k: 907115	n:910000
KS ci ratio: 2.083050e-01	ci left: 3.485031e-04	ci right 4.305560e-04	k: 353	n:910000
CHFR   910000 perm   556 sec   (1635 perm/sec)   p_kst 3.879121e-04   p_cons 9.968297e-01   p_joint 4.076923e-04

Joint ci ratio: 2.015815e-01	ci left: 3.694640e-04	ci right 4.532990e-04	k: 377	n:920000
Cons ci ratio: 2.299757e-04	ci left: 9.967278e-01	ci right 9.969581e-01	k: 917097	n:920000
KS ci ratio: 2.068492e-01	ci left: 3.498673e-04	ci right 4.315929e-04	k: 358	n:920000
CHFR   920000 perm   567 sec   (1624 perm/sec)   p_kst 3.891304e-04   p_cons 9.968446e-01   p_joint 4.097826e-04

Joint ci ratio: 2.010506e-01	ci left: 3.675334e-04	ci right 4.506837e-04	k: 379	n:930000
Cons ci ratio: 2.286356e-04	ci left: 9.967313e-01	ci right 9.969602e-01	k: 927068	n:930000
KS ci ratio: 2.062756e-01	ci left: 3.481446e-04	ci right 4.292138e-04	k: 360	n:930000
CHFR   930000 perm   577 sec   (1612 perm/sec)   p_kst 3.870968e-04   p_cons 9.968473e-01   p_joint 4.075269e-04

Joint ci ratio: 2.007869e-01	ci left: 3.646337e-04	ci right 4.470065e-04	k: 380	n:940000
Cons ci ratio: 2.275494e-04	ci left: 9.967281e-01	ci right 9.969560e-01	k: 937033	n:940000
KS ci ratio: 2.059908e-01	ci left: 3.454498e-04	ci right 4.257664e-04	k: 361	n:940000
CHFR   940000 perm   588 sec   (1599 perm/sec)   p_kst 3.840426e-04   p_cons 9.968436e-01   p_joint 4.042553e-04

Joint ci ratio: 1.887768e-01	ci left: 4.108637e-04	ci right 4.974927e-04	k: 430	n:950000
Cons ci ratio: 2.263647e-04	ci left: 9.967283e-01	ci right 9.969550e-01	k: 947001	n:950000
KS ci ratio: 2.037513e-01	ci left: 3.498026e-04	ci right 4.301370e-04	k: 369	n:950000
CHFR   950000 perm   598 sec   (1587 perm/sec)   p_kst 3.884211e-04   p_cons 9.968432e-01   p_joint 4.526316e-04

Joint ci ratio: 1.876912e-01	ci left: 4.115468e-04	ci right 4.977639e-04	k: 435	n:960000
Cons ci ratio: 2.252728e-04	ci left: 9.967263e-01	ci right 9.969519e-01	k: 956967	n:960000
KS ci ratio: 2.026588e-01	ci left: 3.501135e-04	ci right 4.300348e-04	k: 373	n:960000
CHFR   960000 perm   609 sec   (1577 perm/sec)   p_kst 3.885417e-04   p_cons 9.968406e-01   p_joint 4.531250e-04

Joint ci ratio: 1.866241e-01	ci left: 4.122172e-04	ci right 4.980282e-04	k: 440	n:970000
Cons ci ratio: 2.239765e-04	ci left: 9.967307e-01	ci right 9.969550e-01	k: 966939	n:970000
KS ci ratio: 2.015837e-01	ci left: 3.504191e-04	ci right 4.299336e-04	k: 377	n:970000
CHFR   970000 perm   619 sec   (1566 perm/sec)   p_kst 3.886598e-04   p_cons 9.968443e-01   p_joint 4.536082e-04

Joint ci ratio: 1.851602e-01	ci left: 4.148215e-04	ci right 5.004211e-04	k: 447	n:980000
Cons ci ratio: 2.230270e-04	ci left: 9.967256e-01	ci right 9.969490e-01	k: 976902	n:980000
KS ci ratio: 1.997424e-01	ci left: 3.536274e-04	ci right 4.330477e-04	k: 384	n:980000
CHFR   980000 perm   630 sec   (1555 perm/sec)   p_kst 3.918367e-04   p_cons 9.968388e-01   p_joint 4.561224e-04

Joint ci ratio: 1.843391e-01	ci left: 4.144849e-04	ci right 4.995934e-04	k: 451	n:990000
Cons ci ratio: 2.220533e-04	ci left: 9.967217e-01	ci right 9.969440e-01	k: 986866	n:990000
KS ci ratio: 1.987127e-01	ci left: 3.538943e-04	ci right 4.329152e-04	k: 388	n:990000
CHFR   990000 perm   641 sec   (1543 perm/sec)   p_kst 3.919192e-04   p_cons 9.968343e-01   p_joint 4.555556e-04

Joint ci ratio: 1.839329e-01	ci left: 4.122478e-04	ci right 4.966896e-04	k: 453	n:1000000
Cons ci ratio: 2.211968e-04	ci left: 9.967148e-01	ci right 9.969363e-01	k: 996827	n:1000000
KS ci ratio: 1.984581e-01	ci left: 3.513056e-04	ci right 4.296357e-04	k: 389	n:1000000
CHFR   1000000 perm   653 sec   (1532 perm/sec)   p_kst 3.890000e-04   p_cons 9.968270e-01   p_joint 4.530000e-04

Joint ci ratio: 1.829283e-01	ci left: 4.128893e-04	ci right 4.969494e-04	k: 458	n:1010000
Cons ci ratio: 2.198323e-04	ci left: 9.967232e-01	ci right 9.969433e-01	k: 1006803	n:1010000
KS ci ratio: 1.976993e-01	ci left: 3.506503e-04	ci right 4.284993e-04	k: 392	n:1010000
CHFR   1010000 perm   664 sec   (1521 perm/sec)   p_kst 3.881188e-04   p_cons 9.968347e-01   p_joint 4.534653e-04

Joint ci ratio: 1.912369e-01	ci left: 3.723951e-04	ci right 4.520553e-04	k: 419	n:1020000
Cons ci ratio: 2.186615e-04	ci left: 9.967264e-01	ci right 9.969453e-01	k: 1016774	n:1020000
KS ci ratio: 1.962070e-01	ci left: 3.528049e-04	ci right 4.304704e-04	k: 398	n:1020000
CHFR   1020000 perm   676 sec   (1510 perm/sec)   p_kst 3.901961e-04   p_cons 9.968373e-01   p_joint 4.107843e-04

Joint ci ratio: 1.903327e-01	ci left: 3.724777e-04	ci right 4.517352e-04	k: 423	n:1030000
Cons ci ratio: 2.177436e-04	ci left: 9.967226e-01	ci right 9.969406e-01	k: 1026738	n:1030000
KS ci ratio: 1.952308e-01	ci left: 3.530728e-04	ci right 4.303646e-04	k: 402	n:1030000
CHFR   1030000 perm   687 sec   (1500 perm/sec)   p_kst 3.902913e-04   p_cons 9.968330e-01   p_joint 4.106796e-04

Joint ci ratio: 1.903331e-01	ci left: 3.688961e-04	ci right 4.473916e-04	k: 423	n:1040000
Cons ci ratio: 2.168367e-04	ci left: 9.967189e-01	ci right 9.969360e-01	k: 1036702	n:1040000
KS ci ratio: 1.952312e-01	ci left: 3.496778e-04	ci right 4.262266e-04	k: 402	n:1040000
CHFR   1040000 perm   698 sec   (1490 perm/sec)   p_kst 3.865385e-04   p_cons 9.968288e-01   p_joint 4.067308e-04

Joint ci ratio: 1.896634e-01	ci left: 3.681040e-04	ci right 4.461237e-04	k: 426	n:1050000
Cons ci ratio: 2.161030e-04	ci left: 9.967105e-01	ci right 9.969268e-01	k: 1046661	n:1050000
KS ci ratio: 1.945086e-01	ci left: 3.490653e-04	ci right 4.251636e-04	k: 405	n:1050000
CHFR   1050000 perm   710 sec   (1479 perm/sec)   p_kst 3.857143e-04   p_cons 9.968200e-01   p_joint 4.057143e-04

Joint ci ratio: 1.890008e-01	ci left: 3.673274e-04	ci right 4.448792e-04	k: 429	n:1060000
Cons ci ratio: 2.149913e-04	ci left: 9.967137e-01	ci right 9.969289e-01	k: 1056632	n:1060000
KS ci ratio: 1.937940e-01	ci left: 3.484648e-04	ci right 4.241203e-04	k: 408	n:1060000
CHFR   1060000 perm   721 sec   (1469 perm/sec)   p_kst 3.849057e-04   p_cons 9.968226e-01   p_joint 4.047170e-04

Joint ci ratio: 1.885629e-01	ci left: 3.656752e-04	ci right 4.426788e-04	k: 431	n:1070000
Cons ci ratio: 2.139596e-04	ci left: 9.967149e-01	ci right 9.969291e-01	k: 1066601	n:1070000
KS ci ratio: 1.933221e-01	ci left: 3.469867e-04	ci right 4.221162e-04	k: 410	n:1070000
CHFR   1070000 perm   733 sec   (1459 perm/sec)   p_kst 3.831776e-04   p_cons 9.968234e-01   p_joint 4.028037e-04

Joint ci ratio: 1.881281e-01	ci left: 3.640538e-04	ci right 4.405191e-04	k: 433	n:1080000
Cons ci ratio: 2.127558e-04	ci left: 9.967218e-01	ci right 9.969348e-01	k: 1076576	n:1080000
KS ci ratio: 1.928536e-01	ci left: 3.455362e-04	ci right 4.201490e-04	k: 412	n:1080000
CHFR   1080000 perm   745 sec   (1450 perm/sec)   p_kst 3.814815e-04   p_cons 9.968296e-01   p_joint 4.009259e-04

Joint ci ratio: 1.868409e-01	ci left: 3.659601e-04	ci right 4.422402e-04	k: 439	n:1090000
Cons ci ratio: 2.117864e-04	ci left: 9.967220e-01	ci right 9.969340e-01	k: 1086544	n:1090000
KS ci ratio: 1.914676e-01	ci left: 3.476059e-04	ci right 4.220635e-04	k: 418	n:1090000
CHFR   1090000 perm   757 sec   (1440 perm/sec)   p_kst 3.834862e-04   p_cons 9.968294e-01   p_joint 4.027523e-04

Joint ci ratio: 1.864178e-01	ci left: 3.643664e-04	ci right 4.401229e-04	k: 441	n:1100000
Cons ci ratio: 2.109816e-04	ci left: 9.967176e-01	ci right 9.969288e-01	k: 1096507	n:1100000
KS ci ratio: 1.910125e-01	ci left: 3.461770e-04	ci right 4.201317e-04	k: 420	n:1100000
CHFR   1100000 perm   769 sec   (1430 perm/sec)   p_kst 3.818182e-04   p_cons 9.968245e-01   p_joint 4.009091e-04

Joint ci ratio: 1.851651e-01	ci left: 3.662379e-04	ci right 4.418143e-04	k: 447	n:1110000
Cons ci ratio: 2.099166e-04	ci left: 9.967216e-01	ci right 9.969317e-01	k: 1106479	n:1110000
KS ci ratio: 1.896655e-01	ci left: 3.482061e-04	ci right 4.220093e-04	k: 426	n:1110000
CHFR   1110000 perm   782 sec   (1420 perm/sec)   p_kst 3.837838e-04   p_cons 9.968279e-01   p_joint 4.027027e-04

Joint ci ratio: 1.845483e-01	ci left: 3.655225e-04	ci right 4.406720e-04	k: 450	n:1120000
Cons ci ratio: 2.089264e-04	ci left: 9.967236e-01	ci right 9.969327e-01	k: 1116449	n:1120000
KS ci ratio: 1.890028e-01	ci left: 3.476488e-04	ci right 4.210468e-04	k: 429	n:1120000
CHFR   1120000 perm   794 sec   (1411 perm/sec)   p_kst 3.830357e-04   p_cons 9.968295e-01   p_joint 4.017857e-04

Joint ci ratio: 1.841407e-01	ci left: 3.639760e-04	ci right 4.386237e-04	k: 452	n:1130000
Cons ci ratio: 2.080082e-04	ci left: 9.967238e-01	ci right 9.969320e-01	k: 1126417	n:1130000
KS ci ratio: 1.885649e-01	ci left: 3.462585e-04	ci right 4.191742e-04	k: 431	n:1130000
CHFR   1130000 perm   806 sec   (1401 perm/sec)   p_kst 3.814159e-04   p_cons 9.968292e-01   p_joint 4.000000e-04

Joint ci ratio: 1.837357e-01	ci left: 3.624568e-04	ci right 4.366113e-04	k: 454	n:1140000
Cons ci ratio: 2.070158e-04	ci left: 9.967267e-01	ci right 9.969339e-01	k: 1136388	n:1140000
KS ci ratio: 1.881301e-01	ci left: 3.448928e-04	ci right 4.173343e-04	k: 433	n:1140000
CHFR   1140000 perm   819 sec   (1392 perm/sec)   p_kst 3.798246e-04   p_cons 9.968316e-01   p_joint 3.982456e-04

Joint ci ratio: 1.819446e-01	ci left: 3.667730e-04	ci right 4.409984e-04	k: 463	n:1150000
Cons ci ratio: 2.061225e-04	ci left: 9.967269e-01	ci right 9.969332e-01	k: 1146356	n:1150000
KS ci ratio: 1.864195e-01	ci left: 3.485241e-04	ci right 4.209875e-04	k: 441	n:1150000
CHFR   1150000 perm   832 sec   (1383 perm/sec)   p_kst 3.834783e-04   p_cons 9.968313e-01   p_joint 4.026087e-04

Joint ci ratio: 1.807794e-01	ci left: 3.685488e-04	ci right 4.426037e-04	k: 469	n:1160000
Cons ci ratio: 2.050165e-04	ci left: 9.967341e-01	ci right 9.969393e-01	k: 1156332	n:1160000
KS ci ratio: 1.851667e-01	ci left: 3.504515e-04	ci right 4.227710e-04	k: 447	n:1160000
CHFR   1160000 perm   844 sec   (1375 perm/sec)   p_kst 3.853448e-04   p_cons 9.968379e-01   p_joint 4.043103e-04

Joint ci ratio: 1.796363e-01	ci left: 3.702957e-04	ci right 4.441800e-04	k: 475	n:1170000
Cons ci ratio: 2.042318e-04	ci left: 9.967316e-01	ci right 9.969360e-01	k: 1166297	n:1170000
KS ci ratio: 1.841419e-01	ci left: 3.515322e-04	ci right 4.236283e-04	k: 452	n:1170000
CHFR   1170000 perm   856 sec   (1366 perm/sec)   p_kst 3.863248e-04   p_cons 9.968350e-01   p_joint 4.059829e-04

Joint ci ratio: 1.783296e-01	ci left: 3.728241e-04	ci right 4.466134e-04	k: 482	n:1180000
Cons ci ratio: 2.032919e-04	ci left: 9.967343e-01	ci right 9.969378e-01	k: 1176268	n:1180000
KS ci ratio: 1.827352e-01	ci left: 3.542130e-04	ci right 4.262425e-04	k: 459	n:1180000
CHFR   1180000 perm   869 sec   (1358 perm/sec)   p_kst 3.889831e-04   p_cons 9.968373e-01   p_joint 4.084746e-04

Joint ci ratio: 1.777784e-01	ci left: 3.720998e-04	ci right 4.454936e-04	k: 485	n:1190000
Cons ci ratio: 2.025806e-04	ci left: 9.967302e-01	ci right 9.969329e-01	k: 1186231	n:1190000
KS ci ratio: 1.821423e-01	ci left: 3.536422e-04	ci right 4.252967e-04	k: 462	n:1190000
CHFR   1190000 perm   881 sec   (1350 perm/sec)   p_kst 3.882353e-04   p_cons 9.968328e-01   p_joint 4.075630e-04

Joint ci ratio: 1.777787e-01	ci left: 3.689989e-04	ci right 4.417812e-04	k: 485	n:1200000
Cons ci ratio: 2.017433e-04	ci left: 9.967303e-01	ci right 9.969323e-01	k: 1196199	n:1200000
KS ci ratio: 1.821426e-01	ci left: 3.506952e-04	ci right 4.217526e-04	k: 462	n:1200000
CHFR   1200000 perm   894 sec   (1342 perm/sec)   p_kst 3.850000e-04   p_cons 9.968325e-01   p_joint 4.041667e-04

Joint ci ratio: 1.768712e-01	ci left: 3.698982e-04	ci right 4.424456e-04	k: 490	n:1210000
Cons ci ratio: 2.007584e-04	ci left: 9.967355e-01	ci right 9.969365e-01	k: 1206173	n:1210000
KS ci ratio: 1.811669e-01	ci left: 3.517412e-04	ci right 4.225869e-04	k: 467	n:1210000
CHFR   1210000 perm   907 sec   (1334 perm/sec)   p_kst 3.859504e-04   p_cons 9.968372e-01   p_joint 4.049587e-04

Joint ci ratio: 1.765122e-01	ci left: 3.684330e-04	ci right 4.405308e-04	k: 492	n:1220000
Cons ci ratio: 1.998655e-04	ci left: 9.967381e-01	ci right 9.969382e-01	k: 1216144	n:1220000
KS ci ratio: 1.807812e-01	ci left: 3.504232e-04	ci right 4.208367e-04	k: 469	n:1220000
CHFR   1220000 perm   920 sec   (1326 perm/sec)   p_kst 3.844262e-04   p_cons 9.968393e-01   p_joint 4.032787e-04

Joint ci ratio: 1.747483e-01	ci left: 3.732104e-04	ci right 4.454362e-04	k: 502	n:1230000
Cons ci ratio: 1.991126e-04	ci left: 9.967366e-01	ci right 9.969359e-01	k: 1226110	n:1230000
KS ci ratio: 1.788877e-01	ci left: 3.553384e-04	ci right 4.259108e-04	k: 479	n:1230000
CHFR   1230000 perm   933 sec   (1318 perm/sec)   p_kst 3.894309e-04   p_cons 9.968374e-01   p_joint 4.081301e-04

Joint ci ratio: 1.744021e-01	ci left: 3.717431e-04	ci right 4.435273e-04	k: 504	n:1240000
Cons ci ratio: 1.983934e-04	ci left: 9.967342e-01	ci right 9.969328e-01	k: 1236075	n:1240000
KS ci ratio: 1.785163e-01	ci left: 3.540135e-04	ci right 4.241610e-04	k: 481	n:1240000
CHFR   1240000 perm   947 sec   (1310 perm/sec)   p_kst 3.879032e-04   p_cons 9.968347e-01   p_joint 4.064516e-04

Joint ci ratio: 1.733751e-01	ci left: 3.733602e-04	ci right 4.449878e-04	k: 510	n:1250000
Cons ci ratio: 1.977069e-04	ci left: 9.967311e-01	ci right 9.969290e-01	k: 1246039	n:1250000
KS ci ratio: 1.774153e-01	ci left: 3.557676e-04	ci right 4.257813e-04	k: 487	n:1250000
CHFR   1250000 perm   960 sec   (1302 perm/sec)   p_kst 3.896000e-04   p_cons 9.968312e-01   p_joint 4.080000e-04

Joint ci ratio: 1.732059e-01	ci left: 3.711563e-04	ci right 4.422842e-04	k: 511	n:1260000
Cons ci ratio: 1.967798e-04	ci left: 9.967361e-01	ci right 9.969330e-01	k: 1256013	n:1260000
KS ci ratio: 1.772341e-01	ci left: 3.537024e-04	ci right 4.232310e-04	k: 488	n:1260000
CHFR   1260000 perm   973 sec   (1295 perm/sec)   p_kst 3.873016e-04   p_cons 9.968357e-01   p_joint 4.055556e-04

Joint ci ratio: 1.725332e-01	ci left: 3.712471e-04	ci right 4.420874e-04	k: 515	n:1270000
Cons ci ratio: 1.960121e-04	ci left: 9.967362e-01	ci right 9.969324e-01	k: 1265981	n:1270000
KS ci ratio: 1.765136e-01	ci left: 3.539276e-04	ci right 4.231873e-04	k: 492	n:1270000
CHFR   1270000 perm   987 sec   (1287 perm/sec)   p_kst 3.874016e-04   p_cons 9.968354e-01   p_joint 4.055118e-04

Joint ci ratio: 1.722000e-01	ci left: 3.698418e-04	ci right 4.402635e-04	k: 517	n:1280000
Cons ci ratio: 1.954466e-04	ci left: 9.967300e-01	ci right 9.969256e-01	k: 1275941	n:1280000
KS ci ratio: 1.761568e-01	ci left: 3.526560e-04	ci right 4.215126e-04	k: 494	n:1280000
CHFR   1280000 perm   1001 sec   (1279 perm/sec)   p_kst 3.859375e-04   p_cons 9.968289e-01   p_joint 4.039063e-04

Joint ci ratio: 1.710479e-01	ci left: 3.721681e-04	ci right 4.425097e-04	k: 524	n:1290000
Cons ci ratio: 1.946943e-04	ci left: 9.967301e-01	ci right 9.969250e-01	k: 1285909	n:1290000
KS ci ratio: 1.749240e-01	ci left: 3.551102e-04	ci right 4.239095e-04	k: 501	n:1290000
CHFR   1290000 perm   1014 sec   (1272 perm/sec)   p_kst 3.883721e-04   p_cons 9.968287e-01   p_joint 4.062016e-04

Joint ci ratio: 1.700787e-01	ci left: 3.737237e-04	ci right 4.439180e-04	k: 530	n:1300000
Cons ci ratio: 1.941157e-04	ci left: 9.967248e-01	ci right 9.969191e-01	k: 1295870	n:1300000
KS ci ratio: 1.740593e-01	ci left: 3.560568e-04	ci right 4.246626e-04	k: 506	n:1300000
CHFR   1300000 perm   1028 sec   (1265 perm/sec)   p_kst 3.892308e-04   p_cons 9.968231e-01   p_joint 4.076923e-04

Joint ci ratio: 1.696003e-01	ci left: 3.730636e-04	ci right 4.429167e-04	k: 533	n:1310000
Cons ci ratio: 1.933786e-04	ci left: 9.967250e-01	ci right 9.969186e-01	k: 1305838	n:1310000
KS ci ratio: 1.735467e-01	ci left: 3.555293e-04	ci right 4.238106e-04	k: 509	n:1310000
CHFR   1310000 perm   1042 sec   (1257 perm/sec)   p_kst 3.885496e-04   p_cons 9.968229e-01   p_joint 4.068702e-04

Joint ci ratio: 1.691260e-01	ci left: 3.724137e-04	ci right 4.419302e-04	k: 536	n:1320000
Cons ci ratio: 1.925115e-04	ci left: 9.967299e-01	ci right 9.969225e-01	k: 1315812	n:1320000
KS ci ratio: 1.730385e-01	ci left: 3.550100e-04	ci right 4.229711e-04	k: 512	n:1320000
CHFR   1320000 perm   1056 sec   (1250 perm/sec)   p_kst 3.878788e-04   p_cons 9.968273e-01   p_joint 4.060606e-04

Joint ci ratio: 1.206389e-01	ci left: 7.453717e-04	ci right 8.417859e-04	k: 1054	n:1330000
Cons ci ratio: 1.914731e-04	ci left: 9.967407e-01	ci right 9.969323e-01	k: 1325794	n:1330000
KS ci ratio: 1.718697e-01	ci left: 3.573768e-04	ci right 4.252809e-04	k: 519	n:1330000
CHFR   1330000 perm   1070 sec   (1243 perm/sec)   p_kst 3.902256e-04   p_cons 9.968376e-01   p_joint 7.924812e-04

Joint ci ratio: 1.201275e-01	ci left: 7.463235e-04	ci right 8.424225e-04	k: 1063	n:1340000
Cons ci ratio: 1.908785e-04	ci left: 9.967370e-01	ci right 9.969280e-01	k: 1335757	n:1340000
KS ci ratio: 1.708865e-01	ci left: 3.589954e-04	ci right 4.267766e-04	k: 525	n:1340000
CHFR   1340000 perm   1084 sec   (1236 perm/sec)   p_kst 3.917910e-04   p_cons 9.968336e-01   p_joint 7.932836e-04

Joint ci ratio: 1.197344e-01	ci left: 7.458248e-04	ci right 8.415230e-04	k: 1070	n:1350000
Cons ci ratio: 1.901106e-04	ci left: 9.967394e-01	ci right 9.969296e-01	k: 1345728	n:1350000
KS ci ratio: 1.702404e-01	ci left: 3.591726e-04	ci right 4.267046e-04	k: 529	n:1350000
CHFR   1350000 perm   1099 sec   (1229 perm/sec)   p_kst 3.918519e-04   p_cons 9.968356e-01   p_joint 7.925926e-04

Joint ci ratio: 1.195116e-01	ci left: 7.431939e-04	ci right 8.383646e-04	k: 1074	n:1360000
Cons ci ratio: 1.891530e-04	ci left: 9.967484e-01	ci right 9.969377e-01	k: 1355708	n:1360000
KS ci ratio: 1.700802e-01	ci left: 3.572356e-04	ci right 4.243337e-04	k: 530	n:1360000
CHFR   1360000 perm   1113 sec   (1222 perm/sec)   p_kst 3.897059e-04   p_cons 9.968441e-01   p_joint 7.897059e-04

Joint ci ratio: 1.190693e-01	ci left: 7.434343e-04	ci right 8.382587e-04	k: 1082	n:1370000
Cons ci ratio: 1.884053e-04	ci left: 9.967507e-01	ci right 9.969392e-01	k: 1365679	n:1370000
KS ci ratio: 1.694432e-01	ci left: 3.574237e-04	ci right 4.242800e-04	k: 534	n:1370000
CHFR   1370000 perm   1127 sec   (1215 perm/sec)   p_kst 3.897810e-04   p_cons 9.968460e-01   p_joint 7.897810e-04

Joint ci ratio: 1.184691e-01	ci left: 7.457813e-04	ci right 8.403920e-04	k: 1093	n:1380000
Cons ci ratio: 1.877745e-04	ci left: 9.967492e-01	ci right 9.969371e-01	k: 1375645	n:1380000
KS ci ratio: 1.692853e-01	ci left: 3.555276e-04	ci right 4.219609e-04	k: 535	n:1380000
CHFR   1380000 perm   1143 sec   (1208 perm/sec)   p_kst 3.876812e-04   p_cons 9.968442e-01   p_joint 7.920290e-04

Joint ci ratio: 1.180919e-01	ci left: 7.453030e-04	ci right 8.395309e-04	k: 1100	n:1390000
Cons ci ratio: 1.869146e-04	ci left: 9.967558e-01	ci right 9.969428e-01	k: 1385622	n:1390000
KS ci ratio: 1.689704e-01	ci left: 3.543478e-04	ci right 4.204249e-04	k: 537	n:1390000
CHFR   1390000 perm   1157 sec   (1201 perm/sec)   p_kst 3.863309e-04   p_cons 9.968504e-01   p_joint 7.913669e-04

Joint ci ratio: 1.176121e-01	ci left: 7.462185e-04	ci right 8.401522e-04	k: 1109	n:1400000
Cons ci ratio: 1.862775e-04	ci left: 9.967551e-01	ci right 9.969414e-01	k: 1395589	n:1400000
KS ci ratio: 1.683458e-01	ci left: 3.545533e-04	ci right 4.203995e-04	k: 541	n:1400000
CHFR   1400000 perm   1173 sec   (1194 perm/sec)   p_kst 3.864286e-04   p_cons 9.968493e-01   p_joint 7.921429e-04

Joint ci ratio: 1.170336e-01	ci left: 7.484987e-04	ci right 8.422239e-04	k: 1120	n:1410000
Cons ci ratio: 1.854373e-04	ci left: 9.967615e-01	ci right 9.969471e-01	k: 1405566	n:1410000
KS ci ratio: 1.671167e-01	ci left: 3.574743e-04	ci right 4.233296e-04	k: 549	n:1410000
CHFR   1410000 perm   1187 sec   (1188 perm/sec)   p_kst 3.893617e-04   p_cons 9.968553e-01   p_joint 7.943262e-04

Joint ci ratio: 1.167735e-01	ci left: 7.466457e-04	ci right 8.399169e-04	k: 1125	n:1420000
Cons ci ratio: 1.847945e-04	ci left: 9.967615e-01	ci right 9.969464e-01	k: 1415534	n:1420000
KS ci ratio: 1.671169e-01	ci left: 3.549569e-04	ci right 4.203485e-04	k: 549	n:1420000
CHFR   1420000 perm   1202 sec   (1182 perm/sec)   p_kst 3.866197e-04   p_cons 9.968549e-01   p_joint 7.922535e-04

Joint ci ratio: 1.164123e-01	ci left: 7.461767e-04	ci right 8.390811e-04	k: 1132	n:1430000
Cons ci ratio: 1.842815e-04	ci left: 9.967571e-01	ci right 9.969415e-01	k: 1425496	n:1430000
KS ci ratio: 1.666631e-01	ci left: 3.544849e-04	ci right 4.195944e-04	k: 552	n:1430000
CHFR   1430000 perm   1216 sec   (1176 perm/sec)   p_kst 3.860140e-04   p_cons 9.968503e-01   p_joint 7.916084e-04

Joint ci ratio: 1.160544e-01	ci left: 7.457147e-04	ci right 8.382566e-04	k: 1139	n:1440000
Cons ci ratio: 1.836506e-04	ci left: 9.967571e-01	ci right 9.969409e-01	k: 1435464	n:1440000
KS ci ratio: 1.660635e-01	ci left: 3.546853e-04	ci right 4.195739e-04	k: 556	n:1440000
CHFR   1440000 perm   1231 sec   (1169 perm/sec)   p_kst 3.861111e-04   p_cons 9.968500e-01   p_joint 7.909722e-04

Joint ci ratio: 9.162709e-02	ci left: 1.202914e-03	ci right 1.319093e-03	k: 1827	n:1450000
Cons ci ratio: 1.830061e-04	ci left: 9.967578e-01	ci right 9.969409e-01	k: 1445433	n:1450000
KS ci ratio: 1.643026e-01	ci left: 3.601731e-04	ci right 4.252979e-04	k: 568	n:1450000
CHFR   1450000 perm   1247 sec   (1163 perm/sec)   p_kst 3.917241e-04   p_cons 9.968503e-01   p_joint 1.260000e-03

Joint ci ratio: 1.149998e-01	ci left: 7.494674e-04	ci right 8.415725e-04	k: 1160	n:1460000
Cons ci ratio: 1.824876e-04	ci left: 9.967543e-01	ci right 9.969369e-01	k: 1455396	n:1460000
KS ci ratio: 1.638713e-01	ci left: 3.596766e-04	ci right 4.245240e-04	k: 571	n:1460000
CHFR   1460000 perm   1262 sec   (1157 perm/sec)   p_kst 3.910959e-04   p_cons 9.968466e-01   p_joint 7.945205e-04

Joint ci ratio: 1.147531e-01	ci left: 7.476726e-04	ci right 8.393466e-04	k: 1165	n:1470000
Cons ci ratio: 1.817764e-04	ci left: 9.967577e-01	ci right 9.969396e-01	k: 1465369	n:1470000
KS ci ratio: 1.637284e-01	ci left: 3.578821e-04	ci right 4.223442e-04	k: 572	n:1470000
CHFR   1470000 perm   1277 sec   (1151 perm/sec)   p_kst 3.891156e-04   p_cons 9.968497e-01   p_joint 7.925170e-04

Joint ci ratio: 1.143614e-01	ci left: 7.478713e-04	ci right 8.392356e-04	k: 1173	n:1480000
Cons ci ratio: 1.811319e-04	ci left: 9.967591e-01	ci right 9.969403e-01	k: 1475339	n:1480000
KS ci ratio: 1.631599e-01	ci left: 3.580562e-04	ci right 4.223037e-04	k: 576	n:1480000
CHFR   1480000 perm   1292 sec   (1145 perm/sec)   p_kst 3.891892e-04   p_cons 9.968507e-01   p_joint 7.925676e-04

Joint ci ratio: 1.140220e-01	ci left: 7.474158e-04	ci right 8.384353e-04	k: 1180	n:1490000
Cons ci ratio: 1.805905e-04	ci left: 9.967570e-01	ci right 9.969377e-01	k: 1485304	n:1490000
KS ci ratio: 1.624574e-01	ci left: 3.588721e-04	ci right 4.229617e-04	k: 581	n:1490000
CHFR   1490000 perm   1307 sec   (1140 perm/sec)   p_kst 3.899329e-04   p_cons 9.968483e-01   p_joint 7.919463e-04

Joint ci ratio: 1.136857e-01	ci left: 7.469668e-04	ci right 8.376452e-04	k: 1187	n:1500000
Cons ci ratio: 1.799966e-04	ci left: 9.967570e-01	ci right 9.969371e-01	k: 1495272	n:1500000
KS ci ratio: 1.620404e-01	ci left: 3.583984e-04	ci right 4.222231e-04	k: 584	n:1500000
CHFR   1500000 perm   1323 sec   (1134 perm/sec)   p_kst 3.893333e-04   p_cons 9.968480e-01   p_joint 7.913333e-04

Joint ci ratio: 1.133997e-01	ci left: 7.458806e-04	ci right 8.361842e-04	k: 1193	n:1510000
Cons ci ratio: 1.796164e-04	ci left: 9.967496e-01	ci right 9.969293e-01	k: 1505229	n:1510000
KS ci ratio: 1.617642e-01	ci left: 3.572957e-04	ci right 4.208051e-04	k: 586	n:1510000
CHFR   1510000 perm   1338 sec   (1128 perm/sec)   p_kst 3.880795e-04   p_cons 9.968404e-01   p_joint 7.900662e-04

Joint ci ratio: 1.132104e-01	ci left: 7.435305e-04	ci right 8.333892e-04	k: 1197	n:1520000
Cons ci ratio: 1.790320e-04	ci left: 9.967496e-01	ci right 9.969287e-01	k: 1515197	n:1520000
KS ci ratio: 1.616268e-01	ci left: 3.555764e-04	ci right 4.187212e-04	k: 587	n:1520000
CHFR   1520000 perm   1354 sec   (1123 perm/sec)   p_kst 3.861842e-04   p_cons 9.968401e-01   p_joint 7.875000e-04

Joint ci ratio: 1.128343e-01	ci left: 7.437518e-04	ci right 8.333187e-04	k: 1205	n:1530000
Cons ci ratio: 1.784348e-04	ci left: 9.967503e-01	ci right 9.969288e-01	k: 1525166	n:1530000
KS ci ratio: 1.610798e-01	ci left: 3.557611e-04	ci right 4.187043e-04	k: 591	n:1530000
CHFR   1530000 perm   1369 sec   (1117 perm/sec)   p_kst 3.862745e-04   p_cons 9.968405e-01   p_joint 7.875817e-04

Joint ci ratio: 1.126478e-01	ci left: 7.414463e-04	ci right 8.305782e-04	k: 1209	n:1540000
Cons ci ratio: 1.777885e-04	ci left: 9.967530e-01	ci right 9.969308e-01	k: 1535138	n:1540000
KS ci ratio: 1.608085e-01	ci left: 3.546974e-04	ci right 4.173364e-04	k: 593	n:1540000
CHFR   1540000 perm   1385 sec   (1112 perm/sec)   p_kst 3.850649e-04   p_cons 9.968429e-01   p_joint 7.850649e-04

Joint ci ratio: 1.122311e-01	ci left: 7.423060e-04	ci right 8.311893e-04	k: 1218	n:1550000
Cons ci ratio: 1.773125e-04	ci left: 9.967497e-01	ci right 9.969271e-01	k: 1545101	n:1550000
KS ci ratio: 1.601359e-01	ci left: 3.555053e-04	ci right 4.179991e-04	k: 598	n:1550000
CHFR   1550000 perm   1401 sec   (1106 perm/sec)   p_kst 3.858065e-04   p_cons 9.968394e-01   p_joint 7.858065e-04

Joint ci ratio: 1.119560e-01	ci left: 7.412859e-04	ci right 8.298152e-04	k: 1224	n:1560000
Cons ci ratio: 1.769119e-04	ci left: 9.967439e-01	ci right 9.969209e-01	k: 1555060	n:1560000
KS ci ratio: 1.597364e-01	ci left: 3.550725e-04	ci right 4.173197e-04	k: 601	n:1560000
CHFR   1560000 perm   1419 sec   (1100 perm/sec)   p_kst 3.852564e-04   p_cons 9.968333e-01   p_joint 7.846154e-04

Joint ci ratio: 1.116829e-01	ci left: 7.402791e-04	ci right 8.284582e-04	k: 1230	n:1570000
Cons ci ratio: 1.763178e-04	ci left: 9.967453e-01	ci right 9.969217e-01	k: 1565030	n:1570000
KS ci ratio: 1.592083e-01	ci left: 3.552570e-04	ci right 4.173109e-04	k: 605	n:1570000
CHFR   1570000 perm   1435 sec   (1094 perm/sec)   p_kst 3.853503e-04   p_cons 9.968344e-01   p_joint 7.834395e-04

Joint ci ratio: 1.114568e-01	ci left: 7.386700e-04	ci right 8.264677e-04	k: 1235	n:1580000
Cons ci ratio: 1.757649e-04	ci left: 9.967453e-01	ci right 9.969212e-01	k: 1574998	n:1580000
KS ci ratio: 1.588157e-01	ci left: 3.548317e-04	ci right 4.166439e-04	k: 608	n:1580000
CHFR   1580000 perm   1451 sec   (1089 perm/sec)   p_kst 3.848101e-04   p_cons 9.968342e-01   p_joint 7.816456e-04

Joint ci ratio: 1.111426e-01	ci left: 7.383042e-04	ci right 8.257948e-04	k: 1242	n:1590000
Cons ci ratio: 1.753219e-04	ci left: 9.967416e-01	ci right 9.969170e-01	k: 1584960	n:1590000
KS ci ratio: 1.582967e-01	ci left: 3.550160e-04	ci right 4.166390e-04	k: 612	n:1590000
CHFR   1590000 perm   1467 sec   (1084 perm/sec)   p_kst 3.849057e-04   p_cons 9.968302e-01   p_joint 7.811321e-04

Joint ci ratio: 1.108310e-01	ci left: 7.379433e-04	ci right 8.251300e-04	k: 1249	n:1600000
Cons ci ratio: 1.750028e-04	ci left: 9.967334e-01	ci right 9.969085e-01	k: 1594915	n:1600000
KS ci ratio: 1.576550e-01	ci left: 3.557986e-04	ci right 4.172834e-04	k: 617	n:1600000
CHFR   1600000 perm   1484 sec   (1078 perm/sec)   p_kst 3.856250e-04   p_cons 9.968219e-01   p_joint 7.806250e-04

Joint ci ratio: 1.105220e-01	ci left: 7.375873e-04	ci right 8.244731e-04	k: 1256	n:1610000
Cons ci ratio: 1.743766e-04	ci left: 9.967367e-01	ci right 9.969112e-01	k: 1604888	n:1610000
KS ci ratio: 1.572738e-01	ci left: 3.553786e-04	ci right 4.166283e-04	k: 620	n:1610000
CHFR   1610000 perm   1500 sec   (1073 perm/sec)   p_kst 3.850932e-04   p_cons 9.968248e-01   p_joint 7.801242e-04

Joint ci ratio: 1.103029e-01	ci left: 7.360354e-04	ci right 8.225555e-04	k: 1261	n:1620000
Cons ci ratio: 1.737399e-04	ci left: 9.967406e-01	ci right 9.969144e-01	k: 1614862	n:1620000
KS ci ratio: 1.570212e-01	ci left: 3.543709e-04	ci right 4.153396e-04	k: 622	n:1620000
CHFR   1620000 perm   1517 sec   (1068 perm/sec)   p_kst 3.839506e-04   p_cons 9.968284e-01   p_joint 7.783951e-04

Joint ci ratio: 1.100417e-01	ci left: 7.350994e-04	ci right 8.212915e-04	k: 1267	n:1630000
Cons ci ratio: 1.732780e-04	ci left: 9.967382e-01	ci right 9.969115e-01	k: 1624826	n:1630000
KS ci ratio: 1.567699e-01	ci left: 3.533757e-04	ci right 4.140667e-04	k: 624	n:1630000
CHFR   1630000 perm   1534 sec   (1063 perm/sec)   p_kst 3.828221e-04   p_cons 9.968258e-01   p_joint 7.773006e-04

Joint ci ratio: 1.099119e-01	ci left: 7.323960e-04	ci right 8.181633e-04	k: 1270	n:1640000
Cons ci ratio: 1.727531e-04	ci left: 9.967383e-01	ci right 9.969111e-01	k: 1634794	n:1640000
KS ci ratio: 1.567701e-01	ci left: 3.512209e-04	ci right 4.115419e-04	k: 624	n:1640000
CHFR   1640000 perm   1551 sec   (1058 perm/sec)   p_kst 3.804878e-04   p_cons 9.968256e-01   p_joint 7.743902e-04

Joint ci ratio: 1.096965e-01	ci left: 7.309043e-04	ci right 8.163182e-04	k: 1275	n:1650000
Cons ci ratio: 1.720515e-04	ci left: 9.967452e-01	ci right 9.969173e-01	k: 1644773	n:1650000
KS ci ratio: 1.563952e-01	ci left: 3.508392e-04	ci right 4.109371e-04	k: 627	n:1650000
CHFR   1650000 perm   1568 sec   (1052 perm/sec)   p_kst 3.800000e-04   p_cons 9.968321e-01   p_joint 7.727273e-04

Joint ci ratio: 1.094823e-01	ci left: 7.294307e-04	ci right 8.144953e-04	k: 1280	n:1660000
Cons ci ratio: 1.716030e-04	ci left: 9.967428e-01	ci right 9.969145e-01	k: 1654737	n:1660000
KS ci ratio: 1.561469e-01	ci left: 3.498834e-04	ci right 4.097135e-04	k: 629	n:1660000
CHFR   1660000 perm   1584 sec   (1048 perm/sec)   p_kst 3.789157e-04   p_cons 9.968295e-01   p_joint 7.710843e-04

Joint ci ratio: 1.092693e-01	ci left: 7.279749e-04	ci right 8.126940e-04	k: 1285	n:1670000
Cons ci ratio: 1.711094e-04	ci left: 9.967423e-01	ci right 9.969135e-01	k: 1664704	n:1670000
KS ci ratio: 1.557764e-01	ci left: 3.495146e-04	ci right 4.091266e-04	k: 632	n:1670000
CHFR   1670000 perm   1601 sec   (1043 perm/sec)   p_kst 3.784431e-04   p_cons 9.968287e-01   p_joint 7.694611e-04

Joint ci ratio: 1.089310e-01	ci left: 7.282737e-04	ci right 8.127483e-04	k: 1293	n:1680000
Cons ci ratio: 1.705557e-04	ci left: 9.967442e-01	ci right 9.969148e-01	k: 1674675	n:1680000
KS ci ratio: 1.554086e-01	ci left: 3.491504e-04	ci right 4.085465e-04	k: 635	n:1680000
CHFR   1680000 perm   1619 sec   (1038 perm/sec)   p_kst 3.779762e-04   p_cons 9.968304e-01   p_joint 7.696429e-04

Joint ci ratio: 1.086794e-01	ci left: 7.274181e-04	ci right 8.115860e-04	k: 1299	n:1690000
Cons ci ratio: 1.700710e-04	ci left: 9.967437e-01	ci right 9.969138e-01	k: 1684642	n:1690000
KS ci ratio: 1.551649e-01	ci left: 3.482218e-04	ci right 4.073585e-04	k: 637	n:1690000
CHFR   1690000 perm   1636 sec   (1033 perm/sec)   p_kst 3.769231e-04   p_cons 9.968296e-01   p_joint 7.686391e-04

Joint ci ratio: 1.083051e-01	ci left: 7.282896e-04	ci right 8.122497e-04	k: 1308	n:1700000
Cons ci ratio: 1.694642e-04	ci left: 9.967479e-01	ci right 9.969174e-01	k: 1694617	n:1700000
KS ci ratio: 1.548015e-01	ci left: 3.478697e-04	ci right 4.067953e-04	k: 640	n:1700000
CHFR   1700000 perm   1653 sec   (1029 perm/sec)   p_kst 3.764706e-04   p_cons 9.968335e-01   p_joint 7.694118e-04

Joint ci ratio: 1.081401e-01	ci left: 7.263064e-04	ci right 8.099022e-04	k: 1312	n:1710000
Cons ci ratio: 1.688948e-04	ci left: 9.967509e-01	ci right 9.969199e-01	k: 1704590	n:1710000
KS ci ratio: 1.546810e-01	ci left: 3.463975e-04	ci right 4.050239e-04	k: 641	n:1710000
CHFR   1710000 perm   1670 sec   (1024 perm/sec)   p_kst 3.748538e-04   p_cons 9.968363e-01   p_joint 7.672515e-04

Joint ci ratio: 1.077713e-01	ci left: 7.271750e-04	ci right 8.105672e-04	k: 1321	n:1720000
Cons ci ratio: 1.685173e-04	ci left: 9.967469e-01	ci right 9.969154e-01	k: 1714551	n:1720000
KS ci ratio: 1.542013e-01	ci left: 3.466193e-04	ci right 4.050845e-04	k: 645	n:1720000
CHFR   1720000 perm   1687 sec   (1019 perm/sec)   p_kst 3.750000e-04   p_cons 9.968320e-01   p_joint 7.680233e-04

Joint ci ratio: 1.075682e-01	ci left: 7.257840e-04	ci right 8.088499e-04	k: 1326	n:1730000
Cons ci ratio: 1.680958e-04	ci left: 9.967446e-01	ci right 9.969127e-01	k: 1724515	n:1730000
KS ci ratio: 1.542015e-01	ci left: 3.446157e-04	ci right 4.027430e-04	k: 645	n:1730000
CHFR   1730000 perm   1705 sec   (1015 perm/sec)   p_kst 3.728324e-04   p_cons 9.968295e-01   p_joint 7.664740e-04

Joint ci ratio: 1.075684e-01	ci left: 7.216128e-04	ci right 8.042014e-04	k: 1326	n:1740000
Cons ci ratio: 1.677688e-04	ci left: 9.967388e-01	ci right 9.969066e-01	k: 1734473	n:1740000
KS ci ratio: 1.542017e-01	ci left: 3.426351e-04	ci right 4.004284e-04	k: 645	n:1740000
CHFR   1740000 perm   1723 sec   (1010 perm/sec)   p_kst 3.706897e-04   p_cons 9.968236e-01   p_joint 7.620690e-04

Joint ci ratio: 1.070452e-01	ci left: 7.247185e-04	ci right 8.072338e-04	k: 1339	n:1750000
Cons ci ratio: 1.673224e-04	ci left: 9.967378e-01	ci right 9.969051e-01	k: 1744439	n:1750000
KS ci ratio: 1.538449e-01	ci left: 3.423254e-04	ci right 3.999205e-04	k: 648	n:1750000
CHFR   1750000 perm   1740 sec   (1006 perm/sec)   p_kst 3.702857e-04   p_cons 9.968223e-01   p_joint 7.651429e-04

Joint ci ratio: 1.068064e-01	ci left: 7.239187e-04	ci right 8.061475e-04	k: 1345	n:1760000
Cons ci ratio: 1.669244e-04	ci left: 9.967350e-01	ci right 9.969020e-01	k: 1754402	n:1760000
KS ci ratio: 1.534906e-01	ci left: 3.420194e-04	ci right 3.994183e-04	k: 651	n:1760000
CHFR   1760000 perm   1758 sec   (1001 perm/sec)   p_kst 3.698864e-04   p_cons 9.968193e-01   p_joint 7.642045e-04

Joint ci ratio: 1.065692e-01	ci left: 7.231281e-04	ci right 8.050732e-04	k: 1351	n:1770000
Cons ci ratio: 1.665440e-04	ci left: 9.967317e-01	ci right 9.968983e-01	k: 1764364	n:1770000
KS ci ratio: 1.532558e-01	ci left: 3.411736e-04	ci right 3.983350e-04	k: 653	n:1770000
CHFR   1770000 perm   1776 sec   (997 perm/sec)   p_kst 3.689266e-04   p_cons 9.968158e-01   p_joint 7.632768e-04

Joint ci ratio: 1.061772e-01	ci left: 7.245341e-04	ci right 8.063177e-04	k: 1361	n:1780000
Cons ci ratio: 1.660336e-04	ci left: 9.967336e-01	ci right 9.968996e-01	k: 1774335	n:1780000
KS ci ratio: 1.527892e-01	ci left: 3.414181e-04	ci right 3.984303e-04	k: 657	n:1780000
CHFR   1780000 perm   1794 sec   (992 perm/sec)   p_kst 3.691011e-04   p_cons 9.968174e-01   p_joint 7.646067e-04

Joint ci ratio: 1.059054e-01	ci left: 7.242934e-04	ci right 8.058274e-04	k: 1368	n:1790000
Cons ci ratio: 1.656591e-04	ci left: 9.967303e-01	ci right 9.968960e-01	k: 1784297	n:1790000
KS ci ratio: 1.520972e-01	ci left: 3.427348e-04	ci right 3.996842e-04	k: 663	n:1790000
CHFR   1790000 perm   1813 sec   (987 perm/sec)   p_kst 3.703911e-04   p_cons 9.968140e-01   p_joint 7.642458e-04

Joint ci ratio: 1.055589e-01	ci left: 7.251373e-04	ci right 8.064828e-04	k: 1377	n:1800000
Cons ci ratio: 1.652869e-04	ci left: 9.967271e-01	ci right 9.968924e-01	k: 1794259	n:1800000
KS ci ratio: 1.516412e-01	ci left: 3.429685e-04	ci right 3.997703e-04	k: 667	n:1800000
CHFR   1800000 perm   1831 sec   (983 perm/sec)   p_kst 3.705556e-04   p_cons 9.968106e-01   p_joint 7.650000e-04

Joint ci ratio: 1.052919e-01	ci left: 7.248965e-04	ci right 8.059964e-04	k: 1384	n:1810000
Cons ci ratio: 1.647738e-04	ci left: 9.967295e-01	ci right 9.968943e-01	k: 1804231	n:1810000
KS ci ratio: 1.511892e-01	ci left: 3.431999e-04	ci right 3.998552e-04	k: 671	n:1810000
CHFR   1810000 perm   1850 sec   (979 perm/sec)   p_kst 3.707182e-04   p_cons 9.968127e-01   p_joint 7.646409e-04

Joint ci ratio: 1.049891e-01	ci left: 7.251935e-04	ci right 8.060790e-04	k: 1392	n:1820000
Cons ci ratio: 1.642938e-04	ci left: 9.967308e-01	ci right 9.968951e-01	k: 1814201	n:1820000
KS ci ratio: 1.508528e-01	ci left: 3.429002e-04	ci right 3.993688e-04	k: 674	n:1820000
CHFR   1820000 perm   1868 sec   (974 perm/sec)   p_kst 3.703297e-04   p_cons 9.968137e-01   p_joint 7.648352e-04

Joint ci ratio: 1.046142e-01	ci left: 7.265520e-04	ci right 8.072818e-04	k: 1402	n:1830000
Cons ci ratio: 1.637898e-04	ci left: 9.967332e-01	ci right 9.968970e-01	k: 1824173	n:1830000
KS ci ratio: 1.501867e-01	ci left: 3.441817e-04	ci right 4.005885e-04	k: 680	n:1830000
CHFR   1830000 perm   1887 sec   (970 perm/sec)   p_kst 3.715847e-04   p_cons 9.968158e-01   p_joint 7.661202e-04

Joint ci ratio: 1.042064e-01	ci left: 7.284255e-04	ci right 8.090287e-04	k: 1413	n:1840000
Cons ci ratio: 1.632204e-04	ci left: 9.967383e-01	ci right 9.969015e-01	k: 1834150	n:1840000
KS ci ratio: 1.496384e-01	ci left: 3.449266e-04	ci right 4.012307e-04	k: 685	n:1840000
CHFR   1840000 perm   1906 sec   (965 perm/sec)   p_kst 3.722826e-04   p_cons 9.968207e-01   p_joint 7.679348e-04

Joint ci ratio: 1.039128e-01	ci left: 7.286999e-04	ci right 8.090924e-04	k: 1421	n:1850000
Cons ci ratio: 1.626565e-04	ci left: 9.967433e-01	ci right 9.969060e-01	k: 1844127	n:1850000
KS ci ratio: 1.492040e-01	ci left: 3.451435e-04	ci right 4.013048e-04	k: 689	n:1850000
CHFR   1850000 perm   1926 sec   (961 perm/sec)   p_kst 3.724324e-04   p_cons 9.968254e-01   p_joint 7.681081e-04

Joint ci ratio: 1.034409e-01	ci left: 7.315902e-04	ci right 8.119128e-04	k: 1434	n:1860000
Cons ci ratio: 1.621807e-04	ci left: 9.967450e-01	ci right 9.969072e-01	k: 1854098	n:1860000
KS ci ratio: 1.485594e-01	ci left: 3.463935e-04	ci right 4.024931e-04	k: 695	n:1860000
CHFR   1860000 perm   1944 sec   (957 perm/sec)   p_kst 3.736559e-04   p_cons 9.968269e-01   p_joint 7.709677e-04

Joint ci ratio: 1.032613e-01	ci left: 7.302826e-04	ci right 8.103139e-04	k: 1439	n:1870000
Cons ci ratio: 1.617774e-04	ci left: 9.967440e-01	ci right 9.969058e-01	k: 1864064	n:1870000
KS ci ratio: 1.481343e-01	ci left: 3.466008e-04	ci right 4.025591e-04	k: 699	n:1870000
CHFR   1870000 perm   1963 sec   (953 perm/sec)   p_kst 3.737968e-04   p_cons 9.968257e-01   p_joint 7.695187e-04

Joint ci ratio: 1.031182e-01	ci left: 7.284709e-04	ci right 8.081863e-04	k: 1443	n:1880000
Cons ci ratio: 1.612686e-04	ci left: 9.967473e-01	ci right 9.969086e-01	k: 1874038	n:1880000
KS ci ratio: 1.480287e-01	ci left: 3.452694e-04	ci right 4.009695e-04	k: 700	n:1880000
CHFR   1880000 perm   1982 sec   (949 perm/sec)   p_kst 3.723404e-04   p_cons 9.968287e-01   p_joint 7.675532e-04

Joint ci ratio: 1.026923e-01	ci left: 7.308024e-04	ci right 8.104227e-04	k: 1455	n:1890000
Cons ci ratio: 1.607914e-04	ci left: 9.967495e-01	ci right 9.969103e-01	k: 1884010	n:1890000
KS ci ratio: 1.471910e-01	ci left: 3.475190e-04	ci right 4.032369e-04	k: 708	n:1890000
CHFR   1890000 perm   2001 sec   (945 perm/sec)   p_kst 3.746032e-04   p_cons 9.968307e-01   p_joint 7.698413e-04

Joint ci ratio: 1.024113e-01	ci left: 7.310586e-04	ci right 8.104758e-04	k: 1463	n:1900000
Cons ci ratio: 1.604652e-04	ci left: 9.967458e-01	ci right 9.969063e-01	k: 1893971	n:1900000
KS ci ratio: 1.465721e-01	ci left: 3.487319e-04	ci right 4.043885e-04	k: 714	n:1900000
CHFR   1900000 perm   2020 sec   (940 perm/sec)   p_kst 3.757895e-04   p_cons 9.968268e-01   p_joint 7.700000e-04

Joint ci ratio: 1.021327e-01	ci left: 7.313124e-04	ci right 8.105281e-04	k: 1471	n:1910000
Cons ci ratio: 1.599288e-04	ci left: 9.967507e-01	ci right 9.969106e-01	k: 1903948	n:1910000
KS ci ratio: 1.463676e-01	ci left: 3.479148e-04	ci right 4.033567e-04	k: 716	n:1910000
CHFR   1910000 perm   2040 sec   (936 perm/sec)   p_kst 3.748691e-04   p_cons 9.968314e-01   p_joint 7.701571e-04

Joint ci ratio: 1.016160e-01	ci left: 7.351170e-04	ci right 8.143180e-04	k: 1486	n:1920000
Cons ci ratio: 1.594106e-04	ci left: 9.967550e-01	ci right 9.969144e-01	k: 1913924	n:1920000
KS ci ratio: 1.453572e-01	ci left: 3.511210e-04	ci right 4.066541e-04	k: 726	n:1920000
CHFR   1920000 perm   2059 sec   (932 perm/sec)   p_kst 3.781250e-04   p_cons 9.968354e-01   p_joint 7.739583e-04

Joint ci ratio: 1.013099e-01	ci left: 7.358530e-04	ci right 8.148802e-04	k: 1495	n:1930000
Cons ci ratio: 1.590278e-04	ci left: 9.967539e-01	ci right 9.969130e-01	k: 1923890	n:1930000
KS ci ratio: 1.449589e-01	ci left: 3.512990e-04	ci right 4.066949e-04	k: 730	n:1930000
CHFR   1930000 perm   2078 sec   (929 perm/sec)   p_kst 3.782383e-04   p_cons 9.968342e-01   p_joint 7.746114e-04

Joint ci ratio: 1.011074e-01	ci left: 7.350744e-04	ci right 8.138508e-04	k: 1501	n:1940000
Cons ci ratio: 1.585829e-04	ci left: 9.967555e-01	ci right 9.969141e-01	k: 1933861	n:1940000
KS ci ratio: 1.446624e-01	ci left: 3.509785e-04	ci right 4.062009e-04	k: 733	n:1940000
CHFR   1940000 perm   2097 sec   (925 perm/sec)   p_kst 3.778351e-04   p_cons 9.968356e-01   p_joint 7.737113e-04

Joint ci ratio: 1.409646e-01	ci left: 3.684644e-04	ci right 4.248316e-04	k: 772	n:1950000
Cons ci ratio: 1.581031e-04	ci left: 9.967587e-01	ci right 9.969168e-01	k: 1943835	n:1950000
KS ci ratio: 1.442698e-01	ci left: 3.511558e-04	ci right 4.062432e-04	k: 737	n:1950000
CHFR   1950000 perm   2117 sec   (921 perm/sec)   p_kst 3.779487e-04   p_cons 9.968385e-01   p_joint 3.958974e-04

Joint ci ratio: 1.408736e-01	ci left: 3.670767e-04	ci right 4.231923e-04	k: 773	n:1960000
Cons ci ratio: 1.576403e-04	ci left: 9.967613e-01	ci right 9.969189e-01	k: 1953808	n:1960000
KS ci ratio: 1.441723e-01	ci left: 3.498560e-04	ci right 4.046991e-04	k: 738	n:1960000
CHFR   1960000 perm   2137 sec   (917 perm/sec)   p_kst 3.765306e-04   p_cons 9.968408e-01   p_joint 3.943878e-04

Joint ci ratio: 1.403307e-01	ci left: 3.681519e-04	ci right 4.241968e-04	k: 779	n:1970000
Cons ci ratio: 1.572701e-04	ci left: 9.967602e-01	ci right 9.969175e-01	k: 1963774	n:1970000
KS ci ratio: 1.436870e-01	ci left: 3.505267e-04	ci right 4.052742e-04	k: 743	n:1970000
CHFR   1970000 perm   2157 sec   (914 perm/sec)   p_kst 3.771574e-04   p_cons 9.968396e-01   p_joint 3.954315e-04

Joint ci ratio: 1.397940e-01	ci left: 3.692167e-04	ci right 4.251908e-04	k: 785	n:1980000
Cons ci ratio: 1.568271e-04	ci left: 9.967623e-01	ci right 9.969191e-01	k: 1973746	n:1980000
KS ci ratio: 1.431110e-01	ci left: 3.516780e-04	ci right 4.063663e-04	k: 749	n:1980000
CHFR   1980000 perm   2176 sec   (910 perm/sec)   p_kst 3.782828e-04   p_cons 9.968414e-01   p_joint 3.964646e-04

Joint ci ratio: 1.394396e-01	ci left: 3.693011e-04	ci right 4.251344e-04	k: 789	n:1990000
Cons ci ratio: 1.564377e-04	ci left: 9.967623e-01	ci right 9.969187e-01	k: 1983714	n:1990000
KS ci ratio: 1.427309e-01	ci left: 3.518489e-04	ci right 4.064062e-04	k: 753	n:1990000
CHFR   1990000 perm   2196 sec   (906 perm/sec)   p_kst 3.783920e-04   p_cons 9.968412e-01   p_joint 3.964824e-04

Joint ci ratio: 1.392635e-01	ci left: 3.684198e-04	ci right 4.240436e-04	k: 791	n:2000000
Cons ci ratio: 1.560139e-04	ci left: 9.967638e-01	ci right 9.969198e-01	k: 1993685	n:2000000
KS ci ratio: 1.425420e-01	ci left: 3.510540e-04	ci right 4.054098e-04	k: 755	n:2000000
CHFR   2000000 perm   2215 sec   (903 perm/sec)   p_kst 3.775000e-04   p_cons 9.968425e-01   p_joint 3.955000e-04

Joint ci ratio: 1.390881e-01	ci left: 3.675472e-04	ci right 4.229636e-04	k: 793	n:2010000
Cons ci ratio: 1.555936e-04	ci left: 9.967653e-01	ci right 9.969209e-01	k: 2003656	n:2010000
KS ci ratio: 1.423539e-01	ci left: 3.502670e-04	ci right 4.044233e-04	k: 757	n:2010000
CHFR   2010000 perm   2235 sec   (899 perm/sec)   p_kst 3.766169e-04   p_cons 9.968438e-01   p_joint 3.945274e-04

Joint ci ratio: 1.382202e-01	ci left: 3.705065e-04	ci right 4.259917e-04	k: 803	n:2020000
Cons ci ratio: 1.552255e-04	ci left: 9.967647e-01	ci right 9.969200e-01	k: 2013623	n:2020000
KS ci ratio: 1.414239e-01	ci left: 3.533078e-04	ci right 4.075473e-04	k: 767	n:2020000
CHFR   2020000 perm   2255 sec   (896 perm/sec)   p_kst 3.797030e-04   p_cons 9.968431e-01   p_joint 3.975248e-04

Joint ci ratio: 1.377072e-01	ci left: 3.715350e-04	ci right 4.269509e-04	k: 809	n:2030000
Cons ci ratio: 1.548358e-04	ci left: 9.967652e-01	ci right 9.969201e-01	k: 2023592	n:2030000
KS ci ratio: 1.408746e-01	ci left: 3.544187e-04	ci right 4.085996e-04	k: 773	n:2030000
CHFR   2030000 perm   2275 sec   (892 perm/sec)   p_kst 3.807882e-04   p_cons 9.968433e-01   p_joint 3.985222e-04

Joint ci ratio: 1.387393e-01	ci left: 3.640347e-04	ci right 4.187724e-04	k: 797	n:2040000
Cons ci ratio: 1.544970e-04	ci left: 9.967637e-01	ci right 9.969182e-01	k: 2033557	n:2040000
KS ci ratio: 1.407838e-01	ci left: 3.531542e-04	ci right 4.071042e-04	k: 774	n:2040000
CHFR   2040000 perm   2296 sec   (889 perm/sec)   p_kst 3.794118e-04   p_cons 9.968417e-01   p_joint 3.906863e-04

Joint ci ratio: 1.384793e-01	ci left: 3.636716e-04	ci right 4.182438e-04	k: 800	n:2050000
Cons ci ratio: 1.541127e-04	ci left: 9.967642e-01	ci right 9.969183e-01	k: 2043526	n:2050000
KS ci ratio: 1.405121e-01	ci left: 3.528435e-04	ci right 4.066332e-04	k: 777	n:2050000
CHFR   2050000 perm   2317 sec   (885 perm/sec)   p_kst 3.790244e-04   p_cons 9.968420e-01   p_joint 3.902439e-04

Joint ci ratio: 1.382207e-01	ci left: 3.633121e-04	ci right 4.177202e-04	k: 803	n:2060000
Cons ci ratio: 1.537431e-04	ci left: 9.967642e-01	ci right 9.969179e-01	k: 2053494	n:2060000
KS ci ratio: 1.402420e-01	ci left: 3.525358e-04	ci right 4.061666e-04	k: 780	n:2060000
CHFR   2060000 perm   2337 sec   (882 perm/sec)   p_kst 3.786408e-04   p_cons 9.968417e-01   p_joint 3.898058e-04

Joint ci ratio: 1.381349e-01	ci left: 3.620233e-04	ci right 4.162020e-04	k: 804	n:2070000
Cons ci ratio: 1.533644e-04	ci left: 9.967647e-01	ci right 9.969180e-01	k: 2063463	n:2070000
KS ci ratio: 1.401524e-01	ci left: 3.512988e-04	ci right 4.047045e-04	k: 781	n:2070000
CHFR   2070000 perm   2358 sec   (878 perm/sec)   p_kst 3.772947e-04   p_cons 9.968420e-01   p_joint 3.884058e-04

Joint ci ratio: 1.377930e-01	ci left: 3.621395e-04	ci right 4.161904e-04	k: 808	n:2080000
Cons ci ratio: 1.529651e-04	ci left: 9.967661e-01	ci right 9.969191e-01	k: 2073434	n:2080000
KS ci ratio: 1.397953e-01	ci left: 3.514656e-04	ci right 4.047492e-04	k: 785	n:2080000
CHFR   2080000 perm   2379 sec   (874 perm/sec)   p_kst 3.774038e-04   p_cons 9.968433e-01   p_joint 3.884615e-04

Joint ci ratio: 1.376231e-01	ci left: 3.613308e-04	ci right 4.151890e-04	k: 810	n:2090000
Cons ci ratio: 1.525921e-04	ci left: 9.967666e-01	ci right 9.969191e-01	k: 2083403	n:2090000
KS ci ratio: 1.396179e-01	ci left: 3.507075e-04	ci right 4.038030e-04	k: 787	n:2090000
CHFR   2090000 perm   2400 sec   (871 perm/sec)   p_kst 3.765550e-04   p_cons 9.968435e-01   p_joint 3.875598e-04

Joint ci ratio: 1.372849e-01	ci left: 3.614494e-04	ci right 4.151821e-04	k: 814	n:2100000
Cons ci ratio: 1.521411e-04	ci left: 9.967704e-01	ci right 9.969225e-01	k: 2093379	n:2100000
KS ci ratio: 1.392648e-01	ci left: 3.508757e-04	ci right 4.038513e-04	k: 791	n:2100000
CHFR   2100000 perm   2421 sec   (867 perm/sec)   p_kst 3.766667e-04   p_cons 9.968471e-01   p_joint 3.876190e-04

Joint ci ratio: 1.370330e-01	ci left: 3.611094e-04	ci right 4.146850e-04	k: 817	n:2110000
Cons ci ratio: 1.518885e-04	ci left: 9.967660e-01	ci right 9.969179e-01	k: 2103338	n:2110000
KS ci ratio: 1.390018e-01	ci left: 3.505851e-04	ci right 4.034086e-04	k: 794	n:2110000
CHFR   2110000 perm   2442 sec   (864 perm/sec)   p_kst 3.763033e-04   p_cons 9.968427e-01   p_joint 3.872038e-04

Joint ci ratio: 1.368658e-01	ci left: 3.603171e-04	ci right 4.137047e-04	k: 819	n:2120000
Cons ci ratio: 1.515460e-04	ci left: 9.967655e-01	ci right 9.969171e-01	k: 2113305	n:2120000
KS ci ratio: 1.388274e-01	ci left: 3.498420e-04	ci right 4.024819e-04	k: 796	n:2120000
CHFR   2120000 perm   2464 sec   (861 perm/sec)   p_kst 3.754717e-04   p_cons 9.968420e-01   p_joint 3.863208e-04

Joint ci ratio: 1.368660e-01	ci left: 3.586254e-04	ci right 4.117624e-04	k: 819	n:2130000
Cons ci ratio: 1.511945e-04	ci left: 9.967655e-01	ci right 9.969167e-01	k: 2123273	n:2130000
KS ci ratio: 1.388275e-01	ci left: 3.481996e-04	ci right 4.005923e-04	k: 796	n:2130000
CHFR   2130000 perm   2484 sec   (857 perm/sec)   p_kst 3.737089e-04   p_cons 9.968418e-01   p_joint 3.845070e-04

Joint ci ratio: 1.367827e-01	ci left: 3.574009e-04	ci right 4.103216e-04	k: 820	n:2140000
Cons ci ratio: 1.508566e-04	ci left: 9.967650e-01	ci right 9.969159e-01	k: 2133240	n:2140000
KS ci ratio: 1.388276e-01	ci left: 3.465724e-04	ci right 3.987204e-04	k: 796	n:2140000
CHFR   2140000 perm   2506 sec   (854 perm/sec)   p_kst 3.719626e-04   p_cons 9.968411e-01   p_joint 3.831776e-04

Joint ci ratio: 1.366164e-01	ci left: 3.566370e-04	ci right 4.093751e-04	k: 822	n:2150000
Cons ci ratio: 1.504988e-04	ci left: 9.967655e-01	ci right 9.969160e-01	k: 2143209	n:2150000
KS ci ratio: 1.386538e-01	ci left: 3.458584e-04	ci right 3.978284e-04	k: 798	n:2150000
CHFR   2150000 perm   2528 sec   (851 perm/sec)   p_kst 3.711628e-04   p_cons 9.968414e-01   p_joint 3.823256e-04

Joint ci ratio: 1.361211e-01	ci left: 3.576689e-04	ci right 4.103524e-04	k: 828	n:2160000
Cons ci ratio: 1.500993e-04	ci left: 9.967678e-01	ci right 9.969179e-01	k: 2153182	n:2160000
KS ci ratio: 1.381361e-01	ci left: 3.469388e-04	ci right 3.988605e-04	k: 804	n:2160000
CHFR   2160000 perm   2550 sec   (847 perm/sec)   p_kst 3.722222e-04   p_cons 9.968435e-01   p_joint 3.833333e-04

Joint ci ratio: 1.361212e-01	ci left: 3.560206e-04	ci right 4.084614e-04	k: 828	n:2170000
Cons ci ratio: 1.498345e-04	ci left: 9.967645e-01	ci right 9.969143e-01	k: 2163143	n:2170000
KS ci ratio: 1.381362e-01	ci left: 3.453400e-04	ci right 3.970224e-04	k: 804	n:2170000
CHFR   2170000 perm   2571 sec   (844 perm/sec)   p_kst 3.705069e-04   p_cons 9.968401e-01   p_joint 3.815668e-04

Joint ci ratio: 1.358756e-01	ci left: 3.557168e-04	ci right 4.080106e-04	k: 831	n:2180000
Cons ci ratio: 1.494295e-04	ci left: 9.967673e-01	ci right 9.969167e-01	k: 2173117	n:2180000
KS ci ratio: 1.378795e-01	ci left: 3.450845e-04	ci right 3.966249e-04	k: 807	n:2180000
CHFR   2180000 perm   2593 sec   (841 perm/sec)   p_kst 3.701835e-04   p_cons 9.968427e-01   p_joint 3.811927e-04

Joint ci ratio: 1.355501e-01	ci left: 3.558570e-04	ci right 4.080360e-04	k: 835	n:2190000
Cons ci ratio: 1.491574e-04	ci left: 9.967645e-01	ci right 9.969136e-01	k: 2183079	n:2190000
KS ci ratio: 1.375395e-01	ci left: 3.452723e-04	ci right 3.967032e-04	k: 811	n:2190000
CHFR   2190000 perm   2615 sec   (838 perm/sec)   p_kst 3.703196e-04   p_cons 9.968397e-01   p_joint 3.812785e-04

Joint ci ratio: 1.352270e-01	ci left: 3.559961e-04	ci right 4.080610e-04	k: 839	n:2200000
Cons ci ratio: 1.487685e-04	ci left: 9.967668e-01	ci right 9.969155e-01	k: 2193052	n:2200000
KS ci ratio: 1.372861e-01	ci left: 3.450197e-04	ci right 3.963105e-04	k: 814	n:2200000
CHFR   2200000 perm   2637 sec   (834 perm/sec)   p_kst 3.700000e-04   p_cons 9.968418e-01   p_joint 3.813636e-04

Joint ci ratio: 1.350664e-01	ci left: 3.552596e-04	ci right 4.071502e-04	k: 841	n:2210000
Cons ci ratio: 1.484893e-04	ci left: 9.967645e-01	ci right 9.969129e-01	k: 2203015	n:2210000
KS ci ratio: 1.371181e-01	ci left: 3.443324e-04	ci right 3.954532e-04	k: 816	n:2210000
CHFR   2210000 perm   2659 sec   (831 perm/sec)   p_kst 3.692308e-04   p_cons 9.968394e-01   p_joint 3.805430e-04

Joint ci ratio: 1.348264e-01	ci left: 3.549651e-04	ci right 4.067131e-04	k: 844	n:2220000
Cons ci ratio: 1.481374e-04	ci left: 9.967654e-01	ci right 9.969135e-01	k: 2212985	n:2220000
KS ci ratio: 1.368670e-01	ci left: 3.440864e-04	ci right 3.950696e-04	k: 819	n:2220000
CHFR   2220000 perm   2682 sec   (828 perm/sec)   p_kst 3.689189e-04   p_cons 9.968401e-01   p_joint 3.801802e-04

Joint ci ratio: 1.345084e-01	ci left: 3.551066e-04	ci right 4.067434e-04	k: 848	n:2230000
Cons ci ratio: 1.478091e-04	ci left: 9.967654e-01	ci right 9.969132e-01	k: 2222953	n:2230000
KS ci ratio: 1.365344e-01	ci left: 3.442758e-04	ci right 3.951530e-04	k: 823	n:2230000
CHFR   2230000 perm   2705 sec   (825 perm/sec)   p_kst 3.690583e-04   p_cons 9.968399e-01   p_joint 3.802691e-04

Joint ci ratio: 1.344293e-01	ci left: 3.539527e-04	ci right 4.053891e-04	k: 849	n:2240000
Cons ci ratio: 1.474724e-04	ci left: 9.967658e-01	ci right 9.969133e-01	k: 2232922	n:2240000
KS ci ratio: 1.364517e-01	ci left: 3.431700e-04	ci right 3.938506e-04	k: 824	n:2240000
CHFR   2240000 perm   2726 sec   (822 perm/sec)   p_kst 3.678571e-04   p_cons 9.968402e-01   p_joint 3.790179e-04

Joint ci ratio: 1.340357e-01	ci left: 3.545272e-04	ci right 4.058841e-04	k: 854	n:2250000
Cons ci ratio: 1.472107e-04	ci left: 9.967631e-01	ci right 9.969103e-01	k: 2242884	n:2250000
KS ci ratio: 1.361221e-01	ci left: 3.433620e-04	ci right 3.939385e-04	k: 828	n:2250000
CHFR   2250000 perm   2749 sec   (819 perm/sec)   p_kst 3.680000e-04   p_cons 9.968373e-01   p_joint 3.795556e-04

Joint ci ratio: 1.338012e-01	ci left: 3.542414e-04	ci right 4.054601e-04	k: 857	n:2260000
Cons ci ratio: 1.469709e-04	ci left: 9.967595e-01	ci right 9.969065e-01	k: 2252844	n:2260000
KS ci ratio: 1.358765e-01	ci left: 3.431249e-04	ci right 3.935680e-04	k: 831	n:2260000
CHFR   2260000 perm   2772 sec   (815 perm/sec)   p_kst 3.676991e-04   p_cons 9.968336e-01   p_joint 3.792035e-04

Joint ci ratio: 1.334903e-01	ci left: 3.543841e-04	ci right 4.054949e-04	k: 861	n:2270000
Cons ci ratio: 1.466195e-04	ci left: 9.967609e-01	ci right 9.969075e-01	k: 2262815	n:2270000
KS ci ratio: 1.355510e-01	ci left: 3.433157e-04	ci right 3.936561e-04	k: 835	n:2270000
CHFR   2270000 perm   2796 sec   (812 perm/sec)   p_kst 3.678414e-04   p_cons 9.968348e-01   p_joint 3.792952e-04

Joint ci ratio: 1.332587e-01	ci left: 3.541017e-04	ci right 4.050761e-04	k: 864	n:2280000
Cons ci ratio: 1.463520e-04	ci left: 9.967587e-01	ci right 9.969050e-01	k: 2272778	n:2280000
KS ci ratio: 1.353085e-01	ci left: 3.430811e-04	ci right 3.932899e-04	k: 838	n:2280000
CHFR   2280000 perm   2819 sec   (809 perm/sec)   p_kst 3.675439e-04   p_cons 9.968325e-01   p_joint 3.789474e-04

Joint ci ratio: 1.327226e-01	ci left: 3.555105e-04	ci right 4.064656e-04	k: 871	n:2290000
Cons ci ratio: 1.459040e-04	ci left: 9.967644e-01	ci right 9.969103e-01	k: 2282759	n:2290000
KS ci ratio: 1.348272e-01	ci left: 3.441145e-04	ci right 3.942810e-04	k: 844	n:2290000
CHFR   2290000 perm   2842 sec   (806 perm/sec)   p_kst 3.685590e-04   p_cons 9.968380e-01   p_joint 3.803493e-04

Joint ci ratio: 1.322683e-01	ci left: 3.564870e-04	ci right 4.073934e-04	k: 877	n:2300000
Cons ci ratio: 1.456103e-04	ci left: 9.967635e-01	ci right 9.969091e-01	k: 2292725	n:2300000
KS ci ratio: 1.344300e-01	ci left: 3.447191e-04	ci right 3.948138e-04	k: 849	n:2300000
CHFR   2300000 perm   2865 sec   (803 perm/sec)   p_kst 3.691304e-04   p_cons 9.968370e-01   p_joint 3.813043e-04

Joint ci ratio: 1.321180e-01	ci left: 3.557809e-04	ci right 4.065242e-04	k: 879	n:2310000
Cons ci ratio: 1.452386e-04	ci left: 9.967662e-01	ci right 9.969114e-01	k: 2302699	n:2310000
KS ci ratio: 1.342722e-01	ci left: 3.440635e-04	ci right 3.939996e-04	k: 851	n:2310000
CHFR   2310000 perm   2889 sec   (799 perm/sec)   p_kst 3.683983e-04   p_cons 9.968394e-01   p_joint 3.805195e-04

Joint ci ratio: 1.317442e-01	ci left: 3.563315e-04	ci right 4.069982e-04	k: 884	n:2320000
Cons ci ratio: 1.449489e-04	ci left: 9.967653e-01	ci right 9.969102e-01	k: 2312665	n:2320000
KS ci ratio: 1.338799e-01	ci left: 3.446633e-04	ci right 3.945287e-04	k: 856	n:2320000
CHFR   2320000 perm   2914 sec   (796 perm/sec)   p_kst 3.689655e-04   p_cons 9.968384e-01   p_joint 3.810345e-04

Joint ci ratio: 1.314475e-01	ci left: 3.564624e-04	ci right 4.070247e-04	k: 888	n:2330000
Cons ci ratio: 1.447102e-04	ci left: 9.967622e-01	ci right 9.969069e-01	k: 2322626	n:2330000
KS ci ratio: 1.335685e-01	ci left: 3.448434e-04	ci right 3.946096e-04	k: 860	n:2330000
CHFR   2330000 perm   2938 sec   (793 perm/sec)   p_kst 3.690987e-04   p_cons 9.968352e-01   p_joint 3.811159e-04

Joint ci ratio: 1.310061e-01	ci left: 3.574190e-04	ci right 4.079335e-04	k: 894	n:2340000
Cons ci ratio: 1.443943e-04	ci left: 9.967627e-01	ci right 9.969070e-01	k: 2332595	n:2340000
KS ci ratio: 1.331823e-01	ci left: 3.454352e-04	ci right 3.951312e-04	k: 865	n:2340000
CHFR   2340000 perm   2962 sec   (790 perm/sec)   p_kst 3.696581e-04   p_cons 9.968355e-01   p_joint 3.820513e-04

Joint ci ratio: 1.310062e-01	ci left: 3.558980e-04	ci right 4.061976e-04	k: 894	n:2350000
Cons ci ratio: 1.440415e-04	ci left: 9.967648e-01	ci right 9.969088e-01	k: 2342568	n:2350000
KS ci ratio: 1.331824e-01	ci left: 3.439652e-04	ci right 3.934498e-04	k: 865	n:2350000
CHFR   2350000 perm   2985 sec   (787 perm/sec)   p_kst 3.680851e-04   p_cons 9.968374e-01   p_joint 3.804255e-04

Joint ci ratio: 1.307144e-01	ci left: 3.560294e-04	ci right 4.062268e-04	k: 898	n:2360000
Cons ci ratio: 1.437396e-04	ci left: 9.967648e-01	ci right 9.969085e-01	k: 2352536	n:2360000
KS ci ratio: 1.328759e-01	ci left: 3.441462e-04	ci right 3.935339e-04	k: 869	n:2360000
CHFR   2360000 perm   3009 sec   (784 perm/sec)   p_kst 3.682203e-04   p_cons 9.968373e-01   p_joint 3.805085e-04

Joint ci ratio: 1.303524e-01	ci left: 3.565680e-04	ci right 4.066913e-04	k: 903	n:2370000
Cons ci ratio: 1.434780e-04	ci left: 9.967631e-01	ci right 9.969066e-01	k: 2362500	n:2370000
KS ci ratio: 1.324957e-01	ci left: 3.447338e-04	ci right 3.940532e-04	k: 874	n:2370000
CHFR   2370000 perm   3032 sec   (782 perm/sec)   p_kst 3.687764e-04   p_cons 9.968354e-01   p_joint 3.810127e-04

Joint ci ratio: 1.297793e-01	ci left: 3.583218e-04	ci right 4.084532e-04	k: 911	n:2380000
Cons ci ratio: 1.431891e-04	ci left: 9.967627e-01	ci right 9.969058e-01	k: 2372467	n:2380000
KS ci ratio: 1.318940e-01	ci left: 3.465356e-04	ci right 3.958699e-04	k: 882	n:2380000
CHFR   2380000 perm   3056 sec   (779 perm/sec)   p_kst 3.705882e-04   p_cons 9.968349e-01   p_joint 3.827731e-04

Joint ci ratio: 1.297083e-01	ci left: 3.572274e-04	ci right 4.071761e-04	k: 912	n:2390000
Cons ci ratio: 1.428735e-04	ci left: 9.967635e-01	ci right 9.969064e-01	k: 2382437	n:2390000
KS ci ratio: 1.318195e-01	ci left: 3.454902e-04	ci right 3.946457e-04	k: 883	n:2390000
CHFR   2390000 perm   3079 sec   (776 perm/sec)   p_kst 3.694561e-04   p_cons 9.968356e-01   p_joint 3.815900e-04

Joint ci ratio: 1.294250e-01	ci left: 3.573516e-04	ci right 4.072002e-04	k: 916	n:2400000
Cons ci ratio: 1.425789e-04	ci left: 9.967635e-01	ci right 9.969061e-01	k: 2392405	n:2400000
KS ci ratio: 1.315222e-01	ci left: 3.456625e-04	ci right 3.947229e-04	k: 887	n:2400000
CHFR   2400000 perm   3102 sec   (774 perm/sec)   p_kst 3.695833e-04   p_cons 9.968354e-01   p_joint 3.816667e-04

Joint ci ratio: 1.292139e-01	ci left: 3.570733e-04	ci right 4.067957e-04	k: 919	n:2410000
Cons ci ratio: 1.422580e-04	ci left: 9.967648e-01	ci right 9.969070e-01	k: 2402376	n:2410000
KS ci ratio: 1.313006e-01	ci left: 3.454321e-04	ci right 3.943708e-04	k: 890	n:2410000
CHFR   2410000 perm   3126 sec   (771 perm/sec)   p_kst 3.692946e-04   p_cons 9.968365e-01   p_joint 3.813278e-04

Joint ci ratio: 1.287250e-01	ci left: 3.583971e-04	ci right 4.081005e-04	k: 926	n:2420000
Cons ci ratio: 1.420694e-04	ci left: 9.967602e-01	ci right 9.969022e-01	k: 2412333	n:2420000
KS ci ratio: 1.307878e-01	ci left: 3.468024e-04	ci right 3.957285e-04	k: 897	n:2420000
CHFR   2420000 perm   3150 sec   (768 perm/sec)   p_kst 3.706612e-04   p_cons 9.968318e-01   p_joint 3.826446e-04

Joint ci ratio: 1.284482e-01	ci left: 3.585153e-04	ci right 4.081201e-04	k: 930	n:2430000
Cons ci ratio: 1.418166e-04	ci left: 9.967586e-01	ci right 9.969003e-01	k: 2422297	n:2430000
KS ci ratio: 1.304975e-01	ci left: 3.469675e-04	ci right 3.957998e-04	k: 901	n:2430000
CHFR   2430000 perm   3174 sec   (766 perm/sec)   p_kst 3.707819e-04   p_cons 9.968300e-01   p_joint 3.827160e-04

Joint ci ratio: 1.281731e-01	ci left: 3.586327e-04	ci right 4.081394e-04	k: 934	n:2440000
Cons ci ratio: 1.415192e-04	ci left: 9.967590e-01	ci right 9.969005e-01	k: 2432266	n:2440000
KS ci ratio: 1.302091e-01	ci left: 3.471314e-04	ci right 3.958704e-04	k: 905	n:2440000
CHFR   2440000 perm   3199 sec   (763 perm/sec)   p_kst 3.709016e-04   p_cons 9.968303e-01   p_joint 3.827869e-04

Joint ci ratio: 1.279680e-01	ci left: 3.583542e-04	ci right 4.077372e-04	k: 937	n:2450000
Cons ci ratio: 1.412237e-04	ci left: 9.967594e-01	ci right 9.969006e-01	k: 2442235	n:2450000
KS ci ratio: 1.299940e-01	ci left: 3.468992e-04	ci right 3.955190e-04	k: 908	n:2450000
CHFR   2450000 perm   3224 sec   (760 perm/sec)   p_kst 3.706122e-04   p_cons 9.968306e-01   p_joint 3.824490e-04

Joint ci ratio: 1.272240e-01	ci left: 3.612263e-04	ci right 4.106939e-04	k: 948	n:2460000
Cons ci ratio: 1.410207e-04	ci left: 9.967558e-01	ci right 9.968967e-01	k: 2452194	n:2460000
KS ci ratio: 1.292847e-01	ci left: 3.494223e-04	ci right 3.981079e-04	k: 918	n:2460000
CHFR   2460000 perm   3248 sec   (757 perm/sec)   p_kst 3.731707e-04   p_cons 9.968268e-01   p_joint 3.853659e-04

Joint ci ratio: 1.270234e-01	ci left: 3.609398e-04	ci right 4.102844e-04	k: 951	n:2470000
Cons ci ratio: 1.406743e-04	ci left: 9.967587e-01	ci right 9.968993e-01	k: 2462169	n:2470000
KS ci ratio: 1.290742e-01	ci left: 3.491829e-04	ci right 3.977500e-04	k: 921	n:2470000
CHFR   2470000 perm   3272 sec   (755 perm/sec)   p_kst 3.728745e-04   p_cons 9.968296e-01   p_joint 3.850202e-04

Joint ci ratio: 1.265589e-01	ci left: 3.622175e-04	ci right 4.115420e-04	k: 958	n:2480000
Cons ci ratio: 1.404556e-04	ci left: 9.967558e-01	ci right 9.968962e-01	k: 2472130	n:2480000
KS ci ratio: 1.285869e-01	ci left: 3.505066e-04	ci right 3.990596e-04	k: 928	n:2480000
CHFR   2480000 perm   3296 sec   (752 perm/sec)   p_kst 3.741935e-04   p_cons 9.968266e-01   p_joint 3.862903e-04

Joint ci ratio: 1.264272e-01	ci left: 3.615406e-04	ci right 4.107179e-04	k: 960	n:2490000
Cons ci ratio: 1.402023e-04	ci left: 9.967546e-01	ci right 9.968948e-01	k: 2482095	n:2490000
KS ci ratio: 1.285178e-01	ci left: 3.494876e-04	ci right 3.978715e-04	k: 929	n:2490000
CHFR   2490000 perm   3321 sec   (750 perm/sec)   p_kst 3.730924e-04   p_cons 9.968253e-01   p_joint 3.855422e-04

Joint ci ratio: 1.262303e-01	ci left: 3.612565e-04	ci right 4.103129e-04	k: 963	n:2500000
Cons ci ratio: 1.399062e-04	ci left: 9.967555e-01	ci right 9.968953e-01	k: 2492065	n:2500000
KS ci ratio: 1.283111e-01	ci left: 3.492511e-04	ci right 3.975185e-04	k: 932	n:2500000
CHFR   2500000 perm   3347 sec   (747 perm/sec)   p_kst 3.728000e-04   p_cons 9.968260e-01   p_joint 3.852000e-04

Joint ci ratio: 1.259042e-01	ci left: 3.617464e-04	ci right 4.107330e-04	k: 968	n:2510000
Cons ci ratio: 1.396031e-04	ci left: 9.967567e-01	ci right 9.968963e-01	k: 2502036	n:2510000
KS ci ratio: 1.279686e-01	ci left: 3.497878e-04	ci right 3.979906e-04	k: 937	n:2510000
CHFR   2510000 perm   3372 sec   (744 perm/sec)   p_kst 3.733068e-04   p_cons 9.968271e-01   p_joint 3.856574e-04

Joint ci ratio: 1.257745e-01	ci left: 3.610796e-04	ci right 4.099218e-04	k: 970	n:2520000
Cons ci ratio: 1.393806e-04	ci left: 9.967544e-01	ci right 9.968937e-01	k: 2511998	n:2520000
KS ci ratio: 1.278324e-01	ci left: 3.491680e-04	ci right 3.972304e-04	k: 939	n:2520000
CHFR   2520000 perm   3397 sec   (742 perm/sec)   p_kst 3.726190e-04   p_cons 9.968246e-01   p_joint 3.849206e-04

Joint ci ratio: 1.257099e-01	ci left: 3.600352e-04	ci right 4.087092e-04	k: 971	n:2530000
Cons ci ratio: 1.390809e-04	ci left: 9.967556e-01	ci right 9.968946e-01	k: 2521969	n:2530000
KS ci ratio: 1.277646e-01	ci left: 3.481705e-04	ci right 3.960682e-04	k: 940	n:2530000
CHFR   2530000 perm   3422 sec   (739 perm/sec)   p_kst 3.715415e-04   p_cons 9.968257e-01   p_joint 3.837945e-04

Joint ci ratio: 1.253236e-01	ci left: 3.609058e-04	ci right 4.095364e-04	k: 977	n:2540000
Cons ci ratio: 1.388090e-04	ci left: 9.967556e-01	ci right 9.968944e-01	k: 2531937	n:2540000
KS ci ratio: 1.274264e-01	ci left: 3.487055e-04	ci right 3.965402e-04	k: 945	n:2540000
CHFR   2540000 perm   3446 sec   (737 perm/sec)   p_kst 3.720472e-04   p_cons 9.968256e-01   p_joint 3.846457e-04

Joint ci ratio: 1.250045e-01	ci left: 3.613899e-04	ci right 4.099526e-04	k: 982	n:2550000
Cons ci ratio: 1.384786e-04	ci left: 9.967585e-01	ci right 9.968969e-01	k: 2541912	n:2550000
KS ci ratio: 1.270910e-01	ci left: 3.492364e-04	ci right 3.970083e-04	k: 950	n:2550000
CHFR   2550000 perm   3471 sec   (735 perm/sec)   p_kst 3.725490e-04   p_cons 9.968282e-01   p_joint 3.850980e-04

Joint ci ratio: 1.246877e-01	ci left: 3.618703e-04	ci right 4.103653e-04	k: 987	n:2560000
Cons ci ratio: 1.382444e-04	ci left: 9.967569e-01	ci right 9.968951e-01	k: 2551876	n:2560000
KS ci ratio: 1.267582e-01	ci left: 3.497633e-04	ci right 3.974725e-04	k: 955	n:2560000
CHFR   2560000 perm   3498 sec   (732 perm/sec)   p_kst 3.730469e-04   p_cons 9.968266e-01   p_joint 3.855469e-04

Joint ci ratio: 1.264938e-01	ci left: 3.499094e-04	ci right 3.975316e-04	k: 959	n:2570000
Cons ci ratio: 1.379689e-04	ci left: 9.967573e-01	ci right 9.968952e-01	k: 2561845	n:2570000
KS ci ratio: 1.264938e-01	ci left: 3.499094e-04	ci right 3.975316e-04	k: 959	n:2570000
CHFR   2570000 perm   3524 sec   (729 perm/sec)   p_kst 3.731518e-04   p_cons 9.968268e-01   p_joint 3.731518e-04

Joint ci ratio: 1.261003e-01	ci left: 3.508053e-04	ci right 3.983898e-04	k: 965	n:2580000
Cons ci ratio: 1.376445e-04	ci left: 9.967601e-01	ci right 9.968977e-01	k: 2571820	n:2580000
KS ci ratio: 1.261003e-01	ci left: 3.508053e-04	ci right 3.983898e-04	k: 965	n:2580000
CHFR   2580000 perm   3551 sec   (727 perm/sec)   p_kst 3.740310e-04   p_cons 9.968295e-01   p_joint 3.740310e-04

Joint ci ratio: 1.257752e-01	ci left: 3.513206e-04	ci right 3.988429e-04	k: 970	n:2590000
Cons ci ratio: 1.374229e-04	ci left: 9.967582e-01	ci right 9.968955e-01	k: 2581783	n:2590000
KS ci ratio: 1.257752e-01	ci left: 3.513206e-04	ci right 3.988429e-04	k: 970	n:2590000
CHFR   2590000 perm   3577 sec   (724 perm/sec)   p_kst 3.745174e-04   p_cons 9.968274e-01   p_joint 3.745174e-04

Joint ci ratio: 1.255169e-01	ci left: 3.514594e-04	ci right 3.988957e-04	k: 974	n:2600000
Cons ci ratio: 1.371523e-04	ci left: 9.967586e-01	ci right 9.968957e-01	k: 2591752	n:2600000
KS ci ratio: 1.255169e-01	ci left: 3.514594e-04	ci right 3.988957e-04	k: 974	n:2600000
CHFR   2600000 perm   3604 sec   (721 perm/sec)   p_kst 3.746154e-04   p_cons 9.968277e-01   p_joint 3.746154e-04

Joint ci ratio: 1.253243e-01	ci left: 3.512262e-04	ci right 3.985528e-04	k: 977	n:2610000
Cons ci ratio: 1.368667e-04	ci left: 9.967598e-01	ci right 9.968966e-01	k: 2601723	n:2610000
KS ci ratio: 1.253243e-01	ci left: 3.512262e-04	ci right 3.985528e-04	k: 977	n:2610000
CHFR   2610000 perm   3629 sec   (719 perm/sec)   p_kst 3.743295e-04   p_cons 9.968287e-01   p_joint 3.743295e-04

Joint ci ratio: 1.248147e-01	ci left: 3.528436e-04	ci right 4.001805e-04	k: 985	n:2620000
Cons ci ratio: 1.365498e-04	ci left: 9.967625e-01	ci right 9.968990e-01	k: 2611698	n:2620000
KS ci ratio: 1.248147e-01	ci left: 3.528436e-04	ci right 4.001805e-04	k: 985	n:2620000
CHFR   2620000 perm   3656 sec   (717 perm/sec)   p_kst 3.759542e-04   p_cons 9.968313e-01   p_joint 3.759542e-04

Joint ci ratio: 1.243739e-01	ci left: 3.540806e-04	ci right 4.014034e-04	k: 992	n:2630000
Cons ci ratio: 1.363417e-04	ci left: 9.967602e-01	ci right 9.968965e-01	k: 2621660	n:2630000
KS ci ratio: 1.243739e-01	ci left: 3.540806e-04	ci right 4.014034e-04	k: 992	n:2630000
CHFR   2630000 perm   3681 sec   (714 perm/sec)   p_kst 3.771863e-04   p_cons 9.968289e-01   p_joint 3.771863e-04

Joint ci ratio: 1.242489e-01	ci left: 3.534734e-04	ci right 4.006641e-04	k: 994	n:2640000
Cons ci ratio: 1.360693e-04	ci left: 9.967610e-01	ci right 9.968970e-01	k: 2631630	n:2640000
KS ci ratio: 1.242489e-01	ci left: 3.534734e-04	ci right 4.006641e-04	k: 994	n:2640000
CHFR   2640000 perm   3707 sec   (712 perm/sec)   p_kst 3.765152e-04   p_cons 9.968295e-01   p_joint 3.765152e-04

Joint ci ratio: 1.240620e-01	ci left: 3.532365e-04	ci right 4.003194e-04	k: 997	n:2650000
Cons ci ratio: 1.357741e-04	ci left: 9.967629e-01	ci right 9.968986e-01	k: 2641603	n:2650000
KS ci ratio: 1.240620e-01	ci left: 3.532365e-04	ci right 4.003194e-04	k: 997	n:2650000
CHFR   2650000 perm   3732 sec   (710 perm/sec)   p_kst 3.762264e-04   p_cons 9.968313e-01   p_joint 3.762264e-04

Joint ci ratio: 1.239380e-01	ci left: 3.526371e-04	ci right 3.995896e-04	k: 999	n:2660000
Cons ci ratio: 1.354889e-04	ci left: 9.967645e-01	ci right 9.968999e-01	k: 2651575	n:2660000
KS ci ratio: 1.239380e-01	ci left: 3.526371e-04	ci right 3.995896e-04	k: 999	n:2660000
CHFR   2660000 perm   3758 sec   (708 perm/sec)   p_kst 3.755639e-04   p_cons 9.968327e-01   p_joint 3.755639e-04

Joint ci ratio: 1.236908e-01	ci left: 3.527681e-04	ci right 3.996375e-04	k: 1003	n:2670000
Cons ci ratio: 1.352696e-04	ci left: 9.967629e-01	ci right 9.968981e-01	k: 2661539	n:2670000
KS ci ratio: 1.236908e-01	ci left: 3.527681e-04	ci right 3.996375e-04	k: 1003	n:2670000
CHFR   2670000 perm   3784 sec   (706 perm/sec)   p_kst 3.756554e-04   p_cons 9.968311e-01   p_joint 3.756554e-04

Joint ci ratio: 1.233839e-01	ci left: 3.532598e-04	ci right 4.000696e-04	k: 1008	n:2680000
Cons ci ratio: 1.349556e-04	ci left: 9.967660e-01	ci right 9.969009e-01	k: 2671515	n:2680000
KS ci ratio: 1.233839e-01	ci left: 3.532598e-04	ci right 4.000696e-04	k: 1008	n:2680000
CHFR   2680000 perm   3810 sec   (703 perm/sec)   p_kst 3.761194e-04   p_cons 9.968340e-01   p_joint 3.761194e-04

Joint ci ratio: 1.230187e-01	ci left: 3.541083e-04	ci right 4.008816e-04	k: 1014	n:2690000
Cons ci ratio: 1.346993e-04	ci left: 9.967663e-01	ci right 9.969010e-01	k: 2681484	n:2690000
KS ci ratio: 1.230187e-01	ci left: 3.541083e-04	ci right 4.008816e-04	k: 1014	n:2690000
CHFR   2690000 perm   3837 sec   (701 perm/sec)   p_kst 3.769517e-04   p_cons 9.968342e-01   p_joint 3.769517e-04

Joint ci ratio: 1.227168e-01	ci left: 3.545917e-04	ci right 4.013055e-04	k: 1019	n:2700000
Cons ci ratio: 1.344049e-04	ci left: 9.967686e-01	ci right 9.969029e-01	k: 2691458	n:2700000
KS ci ratio: 1.227168e-01	ci left: 3.545917e-04	ci right 4.013055e-04	k: 1019	n:2700000
CHFR   2700000 perm   3863 sec   (699 perm/sec)   p_kst 3.774074e-04   p_cons 9.968363e-01   p_joint 3.774074e-04

Joint ci ratio: 1.224768e-01	ci left: 3.547140e-04	ci right 4.013460e-04	k: 1023	n:2710000
Cons ci ratio: 1.341517e-04	ci left: 9.967690e-01	ci right 9.969030e-01	k: 2701427	n:2710000
KS ci ratio: 1.224768e-01	ci left: 3.547140e-04	ci right 4.013460e-04	k: 1023	n:2710000
CHFR   2710000 perm   3889 sec   (697 perm/sec)   p_kst 3.774908e-04   p_cons 9.968365e-01   p_joint 3.774908e-04

Joint ci ratio: 1.222978e-01	ci left: 3.544791e-04	ci right 4.010071e-04	k: 1026	n:2720000
Cons ci ratio: 1.339233e-04	ci left: 9.967682e-01	ci right 9.969021e-01	k: 2711393	n:2720000
KS ci ratio: 1.222978e-01	ci left: 3.544791e-04	ci right 4.010071e-04	k: 1026	n:2720000
CHFR   2720000 perm   3917 sec   (694 perm/sec)   p_kst 3.772059e-04   p_cons 9.968357e-01   p_joint 3.772059e-04

Joint ci ratio: 1.220604e-01	ci left: 3.546011e-04	ci right 4.010482e-04	k: 1030	n:2730000
Cons ci ratio: 1.336417e-04	ci left: 9.967700e-01	ci right 9.969036e-01	k: 2721366	n:2730000
KS ci ratio: 1.220604e-01	ci left: 3.546011e-04	ci right 4.010482e-04	k: 1030	n:2730000
CHFR   2730000 perm   3944 sec   (692 perm/sec)   p_kst 3.772894e-04   p_cons 9.968374e-01   p_joint 3.772894e-04

Joint ci ratio: 1.219422e-01	ci left: 3.540146e-04	ci right 4.003367e-04	k: 1032	n:2740000
Cons ci ratio: 1.333078e-04	ci left: 9.967745e-01	ci right 9.969077e-01	k: 2731346	n:2740000
KS ci ratio: 1.219422e-01	ci left: 3.540146e-04	ci right 4.003367e-04	k: 1032	n:2740000
CHFR   2740000 perm   3971 sec   (690 perm/sec)   p_kst 3.766423e-04   p_cons 9.968416e-01   p_joint 3.766423e-04

Joint ci ratio: 1.218243e-01	ci left: 3.534323e-04	ci right 3.996304e-04	k: 1034	n:2750000
Cons ci ratio: 1.330146e-04	ci left: 9.967770e-01	ci right 9.969100e-01	k: 2741321	n:2750000
KS ci ratio: 1.218243e-01	ci left: 3.534323e-04	ci right 3.996304e-04	k: 1034	n:2750000
CHFR   2750000 perm   3998 sec   (688 perm/sec)   p_kst 3.760000e-04   p_cons 9.968440e-01   p_joint 3.760000e-04

Joint ci ratio: 1.215896e-01	ci left: 3.535569e-04	ci right 3.996758e-04	k: 1038	n:2760000
Cons ci ratio: 1.328379e-04	ci left: 9.967740e-01	ci right 9.969068e-01	k: 2751281	n:2760000
KS ci ratio: 1.215896e-01	ci left: 3.535569e-04	ci right 3.996758e-04	k: 1038	n:2760000
CHFR   2760000 perm   4025 sec   (686 perm/sec)   p_kst 3.760870e-04   p_cons 9.968409e-01   p_joint 3.760870e-04

Joint ci ratio: 1.214145e-01	ci left: 3.533307e-04	ci right 3.993489e-04	k: 1041	n:2770000
Cons ci ratio: 1.326162e-04	ci left: 9.967733e-01	ci right 9.969058e-01	k: 2761247	n:2770000
KS ci ratio: 1.214145e-01	ci left: 3.533307e-04	ci right 3.993489e-04	k: 1041	n:2770000
CHFR   2770000 perm   4052 sec   (684 perm/sec)   p_kst 3.758123e-04   p_cons 9.968401e-01   p_joint 3.758123e-04

Joint ci ratio: 1.210086e-01	ci left: 3.545013e-04	ci right 4.005067e-04	k: 1048	n:2780000
Cons ci ratio: 1.323124e-04	ci left: 9.967765e-01	ci right 9.969088e-01	k: 2771224	n:2780000
KS ci ratio: 1.210086e-01	ci left: 3.545013e-04	ci right 4.005067e-04	k: 1048	n:2780000
CHFR   2780000 perm   4079 sec   (681 perm/sec)   p_kst 3.769784e-04   p_cons 9.968432e-01   p_joint 3.769784e-04

Joint ci ratio: 1.207786e-01	ci left: 3.546211e-04	ci right 4.005482e-04	k: 1052	n:2790000
Cons ci ratio: 1.320557e-04	ci left: 9.967776e-01	ci right 9.969096e-01	k: 2781195	n:2790000
KS ci ratio: 1.207786e-01	ci left: 3.546211e-04	ci right 4.005482e-04	k: 1052	n:2790000
CHFR   2790000 perm   4107 sec   (679 perm/sec)   p_kst 3.770609e-04   p_cons 9.968441e-01   p_joint 3.770609e-04

Joint ci ratio: 1.206641e-01	ci left: 3.540473e-04	ci right 3.998535e-04	k: 1054	n:2800000
Cons ci ratio: 1.318005e-04	ci left: 9.967786e-01	ci right 9.969104e-01	k: 2791166	n:2800000
KS ci ratio: 1.206641e-01	ci left: 3.540473e-04	ci right 3.998535e-04	k: 1054	n:2800000
CHFR   2800000 perm   4135 sec   (677 perm/sec)   p_kst 3.764286e-04   p_cons 9.968450e-01   p_joint 3.764286e-04

Joint ci ratio: 1.203223e-01	ci left: 3.548582e-04	ci right 4.006301e-04	k: 1060	n:2810000
Cons ci ratio: 1.315394e-04	ci left: 9.967800e-01	ci right 9.969115e-01	k: 2801138	n:2810000
KS ci ratio: 1.203223e-01	ci left: 3.548582e-04	ci right 4.006301e-04	k: 1060	n:2810000
CHFR   2810000 perm   4163 sec   (675 perm/sec)   p_kst 3.772242e-04   p_cons 9.968463e-01   p_joint 3.772242e-04

Joint ci ratio: 1.200398e-01	ci left: 3.553196e-04	ci right 4.010357e-04	k: 1065	n:2820000
Cons ci ratio: 1.312575e-04	ci left: 9.967825e-01	ci right 9.969137e-01	k: 2811113	n:2820000
KS ci ratio: 1.200398e-01	ci left: 3.553196e-04	ci right 4.010357e-04	k: 1065	n:2820000
CHFR   2820000 perm   4191 sec   (673 perm/sec)   p_kst 3.776596e-04   p_cons 9.968486e-01   p_joint 3.776596e-04

Joint ci ratio: 1.198152e-01	ci left: 3.554351e-04	ci right 4.010744e-04	k: 1069	n:2830000
Cons ci ratio: 1.310584e-04	ci left: 9.967810e-01	ci right 9.969120e-01	k: 2821077	n:2830000
KS ci ratio: 1.198152e-01	ci left: 3.554351e-04	ci right 4.010744e-04	k: 1069	n:2830000
CHFR   2830000 perm   4220 sec   (671 perm/sec)   p_kst 3.777385e-04   p_cons 9.968470e-01   p_joint 3.777385e-04

Joint ci ratio: 1.196476e-01	ci left: 3.552082e-04	ci right 4.007502e-04	k: 1072	n:2840000
Cons ci ratio: 1.308822e-04	ci left: 9.967785e-01	ci right 9.969093e-01	k: 2831038	n:2840000
KS ci ratio: 1.196476e-01	ci left: 3.552082e-04	ci right 4.007502e-04	k: 1072	n:2840000
CHFR   2840000 perm   4248 sec   (669 perm/sec)   p_kst 3.774648e-04   p_cons 9.968444e-01   p_joint 3.774648e-04

Joint ci ratio: 1.194252e-01	ci left: 3.553234e-04	ci right 4.007895e-04	k: 1076	n:2850000
Cons ci ratio: 1.305827e-04	ci left: 9.967820e-01	ci right 9.969125e-01	k: 2841016	n:2850000
KS ci ratio: 1.194252e-01	ci left: 3.553234e-04	ci right 4.007895e-04	k: 1076	n:2850000
CHFR   2850000 perm   4275 sec   (667 perm/sec)   p_kst 3.775439e-04   p_cons 9.968477e-01   p_joint 3.775439e-04

Joint ci ratio: 1.193699e-01	ci left: 3.544202e-04	ci right 3.997482e-04	k: 1077	n:2860000
Cons ci ratio: 1.302851e-04	ci left: 9.967854e-01	ci right 9.969157e-01	k: 2850994	n:2860000
KS ci ratio: 1.193699e-01	ci left: 3.544202e-04	ci right 3.997482e-04	k: 1077	n:2860000
CHFR   2860000 perm   4303 sec   (665 perm/sec)   p_kst 3.765734e-04   p_cons 9.968510e-01   p_joint 3.765734e-04

Joint ci ratio: 1.193146e-01	ci left: 3.535234e-04	ci right 3.987142e-04	k: 1078	n:2870000
Cons ci ratio: 1.301409e-04	ci left: 9.967815e-01	ci right 9.969116e-01	k: 2860951	n:2870000
KS ci ratio: 1.193146e-01	ci left: 3.535234e-04	ci right 3.987142e-04	k: 1078	n:2870000
CHFR   2870000 perm   4331 sec   (663 perm/sec)   p_kst 3.756098e-04   p_cons 9.968470e-01   p_joint 3.756098e-04

Joint ci ratio: 1.191491e-01	ci left: 3.533064e-04	ci right 3.984025e-04	k: 1081	n:2880000
Cons ci ratio: 1.298966e-04	ci left: 9.967825e-01	ci right 9.969123e-01	k: 2870922	n:2880000
KS ci ratio: 1.191491e-01	ci left: 3.533064e-04	ci right 3.984025e-04	k: 1081	n:2880000
CHFR   2880000 perm   4359 sec   (661 perm/sec)   p_kst 3.753472e-04   p_cons 9.968479e-01   p_joint 3.753472e-04

Joint ci ratio: 1.190392e-01	ci left: 3.527553e-04	ci right 3.977366e-04	k: 1083	n:2890000
Cons ci ratio: 1.296465e-04	ci left: 9.967838e-01	ci right 9.969134e-01	k: 2880894	n:2890000
KS ci ratio: 1.190392e-01	ci left: 3.527553e-04	ci right 3.977366e-04	k: 1083	n:2890000
CHFR   2890000 perm   4388 sec   (659 perm/sec)   p_kst 3.747405e-04   p_cons 9.968491e-01   p_joint 3.747405e-04

Joint ci ratio: 1.188201e-01	ci left: 3.528772e-04	ci right 3.977854e-04	k: 1087	n:2900000
Cons ci ratio: 1.294973e-04	ci left: 9.967803e-01	ci right 9.969097e-01	k: 2890852	n:2900000
KS ci ratio: 1.188201e-01	ci left: 3.528772e-04	ci right 3.977854e-04	k: 1087	n:2900000
CHFR   2900000 perm   4416 sec   (657 perm/sec)   p_kst 3.748276e-04   p_cons 9.968455e-01   p_joint 3.748276e-04

Joint ci ratio: 1.185480e-01	ci left: 3.533318e-04	ci right 3.981877e-04	k: 1092	n:2910000
Cons ci ratio: 1.292848e-04	ci left: 9.967799e-01	ci right 9.969091e-01	k: 2900819	n:2910000
KS ci ratio: 1.185480e-01	ci left: 3.533318e-04	ci right 3.981877e-04	k: 1092	n:2910000
CHFR   2910000 perm   4445 sec   (655 perm/sec)   p_kst 3.752577e-04   p_cons 9.968450e-01   p_joint 3.752577e-04

Joint ci ratio: 1.182239e-01	ci left: 3.541157e-04	ci right 3.989396e-04	k: 1098	n:2920000
Cons ci ratio: 1.291226e-04	ci left: 9.967771e-01	ci right 9.969062e-01	k: 2910779	n:2920000
KS ci ratio: 1.182239e-01	ci left: 3.541157e-04	ci right 3.989396e-04	k: 1098	n:2920000
CHFR   2920000 perm   4474 sec   (653 perm/sec)   p_kst 3.760274e-04   p_cons 9.968421e-01   p_joint 3.760274e-04

Joint ci ratio: 1.179559e-01	ci left: 3.545632e-04	ci right 3.993349e-04	k: 1103	n:2930000
Cons ci ratio: 1.289539e-04	ci left: 9.967747e-01	ci right 9.969035e-01	k: 2920740	n:2930000
KS ci ratio: 1.179559e-01	ci left: 3.545632e-04	ci right 3.993349e-04	k: 1103	n:2930000
CHFR   2930000 perm   4503 sec   (651 perm/sec)   p_kst 3.764505e-04   p_cons 9.968396e-01   p_joint 3.764505e-04

Joint ci ratio: 1.177428e-01	ci left: 3.546777e-04	ci right 3.993772e-04	k: 1107	n:2940000
Cons ci ratio: 1.287093e-04	ci left: 9.967760e-01	ci right 9.969046e-01	k: 2930712	n:2940000
KS ci ratio: 1.177428e-01	ci left: 3.546777e-04	ci right 3.993772e-04	k: 1107	n:2940000
CHFR   2940000 perm   4532 sec   (649 perm/sec)   p_kst 3.765306e-04   p_cons 9.968408e-01   p_joint 3.765306e-04

Joint ci ratio: 1.175308e-01	ci left: 3.547914e-04	ci right 3.994192e-04	k: 1111	n:2950000
Cons ci ratio: 1.284800e-04	ci left: 9.967767e-01	ci right 9.969051e-01	k: 2940682	n:2950000
KS ci ratio: 1.175308e-01	ci left: 3.547914e-04	ci right 3.994192e-04	k: 1111	n:2950000
CHFR   2950000 perm   4561 sec   (647 perm/sec)   p_kst 3.766102e-04   p_cons 9.968414e-01   p_joint 3.766102e-04

Joint ci ratio: 1.173200e-01	ci left: 3.549044e-04	ci right 3.994609e-04	k: 1115	n:2960000
Cons ci ratio: 1.282380e-04	ci left: 9.967780e-01	ci right 9.969062e-01	k: 2950654	n:2960000
KS ci ratio: 1.173200e-01	ci left: 3.549044e-04	ci right 3.994609e-04	k: 1115	n:2960000
CHFR   2960000 perm   4591 sec   (645 perm/sec)   p_kst 3.766892e-04   p_cons 9.968426e-01   p_joint 3.766892e-04

Joint ci ratio: 1.172150e-01	ci left: 3.543631e-04	ci right 3.988090e-04	k: 1117	n:2970000
Cons ci ratio: 1.279975e-04	ci left: 9.967793e-01	ci right 9.969072e-01	k: 2960626	n:2970000
KS ci ratio: 1.172150e-01	ci left: 3.543631e-04	ci right 3.988090e-04	k: 1117	n:2970000
CHFR   2970000 perm   4619 sec   (643 perm/sec)   p_kst 3.760943e-04   p_cons 9.968438e-01   p_joint 3.760943e-04

Joint ci ratio: 1.170059e-01	ci left: 3.544769e-04	ci right 3.988523e-04	k: 1121	n:2980000
Cons ci ratio: 1.278468e-04	ci left: 9.967762e-01	ci right 9.969040e-01	k: 2970585	n:2980000
KS ci ratio: 1.170059e-01	ci left: 3.544769e-04	ci right 3.988523e-04	k: 1121	n:2980000
CHFR   2980000 perm   4649 sec   (641 perm/sec)   p_kst 3.761745e-04   p_cons 9.968406e-01   p_joint 3.761745e-04

Joint ci ratio: 1.167979e-01	ci left: 3.545901e-04	ci right 3.988953e-04	k: 1125	n:2990000
Cons ci ratio: 1.276085e-04	ci left: 9.967776e-01	ci right 9.969051e-01	k: 2980557	n:2990000
KS ci ratio: 1.167979e-01	ci left: 3.545901e-04	ci right 3.988953e-04	k: 1125	n:2990000
CHFR   2990000 perm   4678 sec   (639 perm/sec)   p_kst 3.762542e-04   p_cons 9.968418e-01   p_joint 3.762542e-04

Joint ci ratio: 1.165394e-01	ci left: 3.550261e-04	ci right 3.992809e-04	k: 1130	n:3000000
Cons ci ratio: 1.273782e-04	ci left: 9.967785e-01	ci right 9.969058e-01	k: 2990528	n:3000000
KS ci ratio: 1.165394e-01	ci left: 3.550261e-04	ci right 3.992809e-04	k: 1130	n:3000000
CHFR   3000000 perm   4708 sec   (637 perm/sec)   p_kst 3.766667e-04   p_cons 9.968427e-01   p_joint 3.766667e-04

Joint ci ratio: 1.164365e-01	ci left: 3.544917e-04	ci right 3.986382e-04	k: 1132	n:3010000
Cons ci ratio: 1.271894e-04	ci left: 9.967775e-01	ci right 9.969046e-01	k: 3000493	n:3010000
KS ci ratio: 1.164365e-01	ci left: 3.544917e-04	ci right 3.986382e-04	k: 1132	n:3010000
CHFR   3010000 perm   4738 sec   (635 perm/sec)   p_kst 3.760797e-04   p_cons 9.968415e-01   p_joint 3.760797e-04

Joint ci ratio: 1.162827e-01	ci left: 3.542824e-04	ci right 3.983405e-04	k: 1135	n:3020000
Cons ci ratio: 1.270348e-04	ci left: 9.967748e-01	ci right 9.969017e-01	k: 3010453	n:3020000
KS ci ratio: 1.162827e-01	ci left: 3.542824e-04	ci right 3.983405e-04	k: 1135	n:3020000
CHFR   3020000 perm   4769 sec   (633 perm/sec)   p_kst 3.758278e-04   p_cons 9.968387e-01   p_joint 3.758278e-04

Joint ci ratio: 1.161295e-01	ci left: 3.540745e-04	ci right 3.980447e-04	k: 1138	n:3030000
Cons ci ratio: 1.269005e-04	ci left: 9.967711e-01	ci right 9.968979e-01	k: 3020410	n:3030000
KS ci ratio: 1.161295e-01	ci left: 3.540745e-04	ci right 3.980447e-04	k: 1138	n:3030000
CHFR   3030000 perm   4799 sec   (631 perm/sec)   p_kst 3.755776e-04   p_cons 9.968350e-01   p_joint 3.755776e-04

Joint ci ratio: 1.160786e-01	ci left: 3.532291e-04	ci right 3.970738e-04	k: 1139	n:3040000
Cons ci ratio: 1.267137e-04	ci left: 9.967701e-01	ci right 9.968967e-01	k: 3030375	n:3040000
KS ci ratio: 1.160786e-01	ci left: 3.532291e-04	ci right 3.970738e-04	k: 1139	n:3040000
CHFR   3040000 perm   4832 sec   (629 perm/sec)   p_kst 3.746711e-04   p_cons 9.968339e-01   p_joint 3.746711e-04

Joint ci ratio: 1.159769e-01	ci left: 3.527077e-04	ci right 3.964467e-04	k: 1141	n:3050000
Cons ci ratio: 1.265278e-04	ci left: 9.967691e-01	ci right 9.968955e-01	k: 3040340	n:3050000
KS ci ratio: 1.159769e-01	ci left: 3.527077e-04	ci right 3.964467e-04	k: 1141	n:3050000
CHFR   3050000 perm   4862 sec   (627 perm/sec)   p_kst 3.740984e-04   p_cons 9.968328e-01   p_joint 3.740984e-04

Joint ci ratio: 1.158755e-01	ci left: 3.521897e-04	ci right 3.958237e-04	k: 1143	n:3060000
Cons ci ratio: 1.263360e-04	ci left: 9.967684e-01	ci right 9.968947e-01	k: 3050306	n:3060000
KS ci ratio: 1.158755e-01	ci left: 3.521897e-04	ci right 3.958237e-04	k: 1143	n:3060000
CHFR   3060000 perm   4893 sec   (625 perm/sec)   p_kst 3.735294e-04   p_cons 9.968320e-01   p_joint 3.735294e-04

Joint ci ratio: 1.157239e-01	ci left: 3.519914e-04	ci right 3.955399e-04	k: 1146	n:3070000
Cons ci ratio: 1.261387e-04	ci left: 9.967681e-01	ci right 9.968942e-01	k: 3060273	n:3070000
KS ci ratio: 1.157239e-01	ci left: 3.519914e-04	ci right 3.955399e-04	k: 1146	n:3070000
CHFR   3070000 perm   4926 sec   (623 perm/sec)   p_kst 3.732899e-04   p_cons 9.968316e-01   p_joint 3.732899e-04

Joint ci ratio: 1.155227e-01	ci left: 3.521097e-04	ci right 3.955919e-04	k: 1150	n:3080000
Cons ci ratio: 1.259422e-04	ci left: 9.967678e-01	ci right 9.968936e-01	k: 3070240	n:3080000
KS ci ratio: 1.155227e-01	ci left: 3.521097e-04	ci right 3.955919e-04	k: 1150	n:3080000
CHFR   3080000 perm   4957 sec   (621 perm/sec)   p_kst 3.733766e-04   p_cons 9.968312e-01   p_joint 3.733766e-04

Joint ci ratio: 1.152725e-01	ci left: 3.525416e-04	ci right 3.959765e-04	k: 1155	n:3090000
Cons ci ratio: 1.257210e-04	ci left: 9.967688e-01	ci right 9.968944e-01	k: 3080211	n:3090000
KS ci ratio: 1.152725e-01	ci left: 3.525416e-04	ci right 3.959765e-04	k: 1155	n:3090000
CHFR   3090000 perm   4987 sec   (620 perm/sec)   p_kst 3.737864e-04   p_cons 9.968320e-01   p_joint 3.737864e-04

Joint ci ratio: 1.151233e-01	ci left: 3.523442e-04	ci right 3.956947e-04	k: 1158	n:3100000
Cons ci ratio: 1.255969e-04	ci left: 9.967648e-01	ci right 9.968904e-01	k: 3090167	n:3100000
KS ci ratio: 1.151233e-01	ci left: 3.523442e-04	ci right 3.956947e-04	k: 1158	n:3100000
CHFR   3100000 perm   5019 sec   (618 perm/sec)   p_kst 3.735484e-04   p_cons 9.968281e-01   p_joint 3.735484e-04

Joint ci ratio: 1.149251e-01	ci left: 3.524605e-04	ci right 3.957456e-04	k: 1162	n:3110000
Cons ci ratio: 1.254221e-04	ci left: 9.967636e-01	ci right 9.968889e-01	k: 3100131	n:3110000
KS ci ratio: 1.149251e-01	ci left: 3.524605e-04	ci right 3.957456e-04	k: 1162	n:3110000
CHFR   3110000 perm   5053 sec   (616 perm/sec)   p_kst 3.736334e-04   p_cons 9.968267e-01   p_joint 3.736334e-04

Joint ci ratio: 1.147280e-01	ci left: 3.525760e-04	ci right 3.957960e-04	k: 1166	n:3120000
Cons ci ratio: 1.252734e-04	ci left: 9.967610e-01	ci right 9.968862e-01	k: 3110091	n:3120000
KS ci ratio: 1.147280e-01	ci left: 3.525760e-04	ci right 3.957960e-04	k: 1166	n:3120000
CHFR   3120000 perm   5084 sec   (614 perm/sec)   p_kst 3.737179e-04   p_cons 9.968240e-01   p_joint 3.737179e-04

Joint ci ratio: 1.145319e-01	ci left: 3.526909e-04	ci right 3.958461e-04	k: 1170	n:3130000
Cons ci ratio: 1.250683e-04	ci left: 9.967613e-01	ci right 9.968863e-01	k: 3120060	n:3130000
KS ci ratio: 1.145319e-01	ci left: 3.526909e-04	ci right 3.958461e-04	k: 1170	n:3130000
CHFR   3130000 perm   5115 sec   (612 perm/sec)   p_kst 3.738019e-04   p_cons 9.968243e-01   p_joint 3.738019e-04

Joint ci ratio: 1.143854e-01	ci left: 3.524957e-04	ci right 3.955682e-04	k: 1173	n:3140000
Cons ci ratio: 1.248705e-04	ci left: 9.967614e-01	ci right 9.968861e-01	k: 3130028	n:3140000
KS ci ratio: 1.143854e-01	ci left: 3.524957e-04	ci right 3.955682e-04	k: 1173	n:3140000
CHFR   3140000 perm   5146 sec   (610 perm/sec)   p_kst 3.735669e-04   p_cons 9.968242e-01   p_joint 3.735669e-04

Joint ci ratio: 1.140459e-01	ci left: 3.535355e-04	ci right 3.965980e-04	k: 1180	n:3150000
Cons ci ratio: 1.246799e-04	ci left: 9.967611e-01	ci right 9.968856e-01	k: 3139995	n:3150000
KS ci ratio: 1.140459e-01	ci left: 3.535355e-04	ci right 3.965980e-04	k: 1180	n:3150000
CHFR   3150000 perm   5178 sec   (608 perm/sec)   p_kst 3.746032e-04   p_cons 9.968238e-01   p_joint 3.746032e-04

Joint ci ratio: 1.139013e-01	ci left: 3.533390e-04	ci right 3.963194e-04	k: 1183	n:3160000
Cons ci ratio: 1.245896e-04	ci left: 9.967556e-01	ci right 9.968801e-01	k: 3149946	n:3160000
KS ci ratio: 1.139013e-01	ci left: 3.533390e-04	ci right 3.963194e-04	k: 1183	n:3160000
CHFR   3160000 perm   5210 sec   (607 perm/sec)   p_kst 3.743671e-04   p_cons 9.968184e-01   p_joint 3.743671e-04

Joint ci ratio: 1.138533e-01	ci left: 3.525308e-04	ci right 3.953936e-04	k: 1184	n:3170000
Cons ci ratio: 1.244250e-04	ci left: 9.967541e-01	ci right 9.968784e-01	k: 3159909	n:3170000
KS ci ratio: 1.138533e-01	ci left: 3.525308e-04	ci right 3.953936e-04	k: 1184	n:3170000
CHFR   3170000 perm   5241 sec   (605 perm/sec)   p_kst 3.735016e-04   p_cons 9.968167e-01   p_joint 3.735016e-04

Joint ci ratio: 1.137095e-01	ci left: 3.523388e-04	ci right 3.951205e-04	k: 1187	n:3180000
Cons ci ratio: 1.242056e-04	ci left: 9.967554e-01	ci right 9.968795e-01	k: 3169881	n:3180000
KS ci ratio: 1.137095e-01	ci left: 3.523388e-04	ci right 3.951205e-04	k: 1187	n:3180000
CHFR   3180000 perm   5274 sec   (603 perm/sec)   p_kst 3.732704e-04   p_cons 9.968179e-01   p_joint 3.732704e-04

Joint ci ratio: 1.133759e-01	ci left: 3.533663e-04	ci right 3.961385e-04	k: 1194	n:3190000
Cons ci ratio: 1.240486e-04	ci left: 9.967536e-01	ci right 9.968775e-01	k: 3179843	n:3190000
KS ci ratio: 1.133759e-01	ci left: 3.533663e-04	ci right 3.961385e-04	k: 1194	n:3190000
CHFR   3190000 perm   5307 sec   (601 perm/sec)   p_kst 3.742947e-04   p_cons 9.968160e-01   p_joint 3.742947e-04

Joint ci ratio: 1.133285e-01	ci left: 3.525657e-04	ci right 3.952219e-04	k: 1195	n:3200000
Cons ci ratio: 1.238433e-04	ci left: 9.967542e-01	ci right 9.968780e-01	k: 3189813	n:3200000
KS ci ratio: 1.133285e-01	ci left: 3.525657e-04	ci right 3.952219e-04	k: 1195	n:3200000
CHFR   3200000 perm   5339 sec   (599 perm/sec)   p_kst 3.734375e-04   p_cons 9.968166e-01   p_joint 3.734375e-04

Joint ci ratio: 1.132339e-01	ci left: 3.520727e-04	ci right 3.946314e-04	k: 1197	n:3210000
Cons ci ratio: 1.236209e-04	ci left: 9.967559e-01	ci right 9.968794e-01	k: 3199786	n:3210000
KS ci ratio: 1.132339e-01	ci left: 3.520727e-04	ci right 3.946314e-04	k: 1197	n:3210000
CHFR   3210000 perm   5370 sec   (598 perm/sec)   p_kst 3.728972e-04   p_cons 9.968181e-01   p_joint 3.728972e-04

Joint ci ratio: 1.130453e-01	ci left: 3.521864e-04	ci right 3.946832e-04	k: 1201	n:3220000
Cons ci ratio: 1.234118e-04	ci left: 9.967568e-01	ci right 9.968802e-01	k: 3209757	n:3220000
KS ci ratio: 1.130453e-01	ci left: 3.521864e-04	ci right 3.946832e-04	k: 1201	n:3220000
CHFR   3220000 perm   5401 sec   (596 perm/sec)   p_kst 3.729814e-04   p_cons 9.968189e-01   p_joint 3.729814e-04

Joint ci ratio: 1.127642e-01	ci left: 3.529012e-04	ci right 3.953713e-04	k: 1207	n:3230000
Cons ci ratio: 1.232217e-04	ci left: 9.967569e-01	ci right 9.968800e-01	k: 3219725	n:3230000
KS ci ratio: 1.127642e-01	ci left: 3.529012e-04	ci right 3.953713e-04	k: 1207	n:3230000
CHFR   3230000 perm   5433 sec   (595 perm/sec)   p_kst 3.736842e-04   p_cons 9.968189e-01   p_joint 3.736842e-04

Joint ci ratio: 1.126245e-01	ci left: 3.527118e-04	ci right 3.951031e-04	k: 1210	n:3240000
Cons ci ratio: 1.230265e-04	ci left: 9.967572e-01	ci right 9.968802e-01	k: 3229694	n:3240000
KS ci ratio: 1.126245e-01	ci left: 3.527118e-04	ci right 3.951031e-04	k: 1210	n:3240000
CHFR   3240000 perm   5464 sec   (593 perm/sec)   p_kst 3.734568e-04   p_cons 9.968191e-01   p_joint 3.734568e-04

Joint ci ratio: 1.123927e-01	ci left: 3.531217e-04	ci right 3.954691e-04	k: 1215	n:3250000
Cons ci ratio: 1.228501e-04	ci left: 9.967566e-01	ci right 9.968794e-01	k: 3239660	n:3250000
KS ci ratio: 1.123927e-01	ci left: 3.531217e-04	ci right 3.954691e-04	k: 1215	n:3250000
CHFR   3250000 perm   5495 sec   (591 perm/sec)   p_kst 3.738462e-04   p_cons 9.968185e-01   p_joint 3.738462e-04

Joint ci ratio: 1.121623e-01	ci left: 3.535292e-04	ci right 3.958328e-04	k: 1220	n:3260000
Cons ci ratio: 1.227160e-04	ci left: 9.967539e-01	ci right 9.968765e-01	k: 3249619	n:3260000
KS ci ratio: 1.121623e-01	ci left: 3.535292e-04	ci right 3.958328e-04	k: 1220	n:3260000
CHFR   3260000 perm   5526 sec   (590 perm/sec)   p_kst 3.742331e-04   p_cons 9.968156e-01   p_joint 3.742331e-04

Joint ci ratio: 1.121164e-01	ci left: 3.527453e-04	ci right 3.949367e-04	k: 1221	n:3270000
Cons ci ratio: 1.225292e-04	ci left: 9.967539e-01	ci right 9.968764e-01	k: 3259587	n:3270000
KS ci ratio: 1.121164e-01	ci left: 3.527453e-04	ci right 3.949367e-04	k: 1221	n:3270000
CHFR   3270000 perm   5559 sec   (588 perm/sec)   p_kst 3.733945e-04   p_cons 9.968156e-01   p_joint 3.733945e-04

Joint ci ratio: 1.117511e-01	ci left: 3.540406e-04	ci right 3.962399e-04	k: 1229	n:3280000
Cons ci ratio: 1.223372e-04	ci left: 9.967543e-01	ci right 9.968765e-01	k: 3269556	n:3280000
KS ci ratio: 1.117511e-01	ci left: 3.540406e-04	ci right 3.962399e-04	k: 1229	n:3280000
CHFR   3280000 perm   5591 sec   (587 perm/sec)   p_kst 3.746951e-04   p_cons 9.968159e-01   p_joint 3.746951e-04

Joint ci ratio: 1.114345e-01	ci left: 3.550328e-04	ci right 3.972225e-04	k: 1236	n:3290000
Cons ci ratio: 1.221930e-04	ci left: 9.967522e-01	ci right 9.968743e-01	k: 3279517	n:3290000
KS ci ratio: 1.114345e-01	ci left: 3.550328e-04	ci right 3.972225e-04	k: 1236	n:3290000
CHFR   3290000 perm   5622 sec   (585 perm/sec)   p_kst 3.756839e-04   p_cons 9.968137e-01   p_joint 3.756839e-04

Joint ci ratio: 1.112547e-01	ci left: 3.551353e-04	ci right 3.972647e-04	k: 1240	n:3300000
Cons ci ratio: 1.220143e-04	ci left: 9.967519e-01	ci right 9.968739e-01	k: 3289484	n:3300000
KS ci ratio: 1.112547e-01	ci left: 3.551353e-04	ci right 3.972647e-04	k: 1240	n:3300000
CHFR   3300000 perm   5655 sec   (584 perm/sec)   p_kst 3.757576e-04   p_cons 9.968133e-01   p_joint 3.757576e-04

Joint ci ratio: 1.110758e-01	ci left: 3.552372e-04	ci right 3.973065e-04	k: 1244	n:3310000
Cons ci ratio: 1.218017e-04	ci left: 9.967535e-01	ci right 9.968752e-01	k: 3299457	n:3310000
KS ci ratio: 1.110758e-01	ci left: 3.552372e-04	ci right 3.973065e-04	k: 1244	n:3310000
CHFR   3310000 perm   5688 sec   (582 perm/sec)   p_kst 3.758308e-04   p_cons 9.968148e-01   p_joint 3.758308e-04

Joint ci ratio: 1.109423e-01	ci left: 3.550458e-04	ci right 3.970385e-04	k: 1247	n:3320000
Cons ci ratio: 1.215959e-04	ci left: 9.967548e-01	ci right 9.968763e-01	k: 3309429	n:3320000
KS ci ratio: 1.109423e-01	ci left: 3.550458e-04	ci right 3.970385e-04	k: 1247	n:3320000
CHFR   3320000 perm   5720 sec   (580 perm/sec)   p_kst 3.756024e-04   p_cons 9.968160e-01   p_joint 3.756024e-04

Joint ci ratio: 1.107649e-01	ci left: 3.551475e-04	ci right 3.970807e-04	k: 1251	n:3330000
Cons ci ratio: 1.214255e-04	ci left: 9.967542e-01	ci right 9.968755e-01	k: 3319395	n:3330000
KS ci ratio: 1.107649e-01	ci left: 3.551475e-04	ci right 3.970807e-04	k: 1251	n:3330000
CHFR   3330000 perm   5754 sec   (579 perm/sec)   p_kst 3.756757e-04   p_cons 9.968153e-01   p_joint 3.756757e-04

Joint ci ratio: 1.106325e-01	ci left: 3.549575e-04	ci right 3.968149e-04	k: 1254	n:3340000
Cons ci ratio: 1.212216e-04	ci left: 9.967555e-01	ci right 9.968766e-01	k: 3329367	n:3340000
KS ci ratio: 1.106325e-01	ci left: 3.549575e-04	ci right 3.968149e-04	k: 1254	n:3340000
CHFR   3340000 perm   5786 sec   (577 perm/sec)   p_kst 3.754491e-04   p_cons 9.968165e-01   p_joint 3.754491e-04

Joint ci ratio: 1.104566e-01	ci left: 3.550589e-04	ci right 3.968574e-04	k: 1258	n:3350000
Cons ci ratio: 1.209788e-04	ci left: 9.967588e-01	ci right 9.968797e-01	k: 3339346	n:3350000
KS ci ratio: 1.104566e-01	ci left: 3.550589e-04	ci right 3.968574e-04	k: 1258	n:3350000
CHFR   3350000 perm   5819 sec   (576 perm/sec)   p_kst 3.755224e-04   p_cons 9.968197e-01   p_joint 3.755224e-04

Joint ci ratio: 1.103252e-01	ci left: 3.548704e-04	ci right 3.965938e-04	k: 1261	n:3360000
Cons ci ratio: 1.208395e-04	ci left: 9.967568e-01	ci right 9.968775e-01	k: 3349307	n:3360000
KS ci ratio: 1.103252e-01	ci left: 3.548704e-04	ci right 3.965938e-04	k: 1261	n:3360000
CHFR   3360000 perm   5852 sec   (574 perm/sec)   p_kst 3.752976e-04   p_cons 9.968176e-01   p_joint 3.752976e-04

Joint ci ratio: 1.101943e-01	ci left: 3.546830e-04	ci right 3.963317e-04	k: 1264	n:3370000
Cons ci ratio: 1.206441e-04	ci left: 9.967577e-01	ci right 9.968782e-01	k: 3359278	n:3370000
KS ci ratio: 1.101943e-01	ci left: 3.546830e-04	ci right 3.963317e-04	k: 1264	n:3370000
CHFR   3370000 perm   5886 sec   (573 perm/sec)   p_kst 3.750742e-04   p_cons 9.968184e-01   p_joint 3.750742e-04

Joint ci ratio: 1.099339e-01	ci left: 3.553600e-04	ci right 3.969831e-04	k: 1270	n:3380000
Cons ci ratio: 1.204609e-04	ci left: 9.967580e-01	ci right 9.968784e-01	k: 3369247	n:3380000
KS ci ratio: 1.099339e-01	ci left: 3.553600e-04	ci right 3.969831e-04	k: 1270	n:3380000
CHFR   3380000 perm   5919 sec   (571 perm/sec)   p_kst 3.757396e-04   p_cons 9.968186e-01   p_joint 3.757396e-04

Joint ci ratio: 1.098475e-01	ci left: 3.548854e-04	ci right 3.964182e-04	k: 1272	n:3390000
Cons ci ratio: 1.202505e-04	ci left: 9.967598e-01	ci right 9.968800e-01	k: 3379221	n:3390000
KS ci ratio: 1.098475e-01	ci left: 3.548854e-04	ci right 3.964182e-04	k: 1272	n:3390000
CHFR   3390000 perm   5953 sec   (569 perm/sec)   p_kst 3.752212e-04   p_cons 9.968204e-01   p_joint 3.752212e-04

Joint ci ratio: 1.097614e-01	ci left: 3.544137e-04	ci right 3.958567e-04	k: 1274	n:3400000
Cons ci ratio: 1.200524e-04	ci left: 9.967611e-01	ci right 9.968810e-01	k: 3389193	n:3400000
KS ci ratio: 1.097614e-01	ci left: 3.544137e-04	ci right 3.958567e-04	k: 1274	n:3400000
CHFR   3400000 perm   5986 sec   (568 perm/sec)   p_kst 3.747059e-04   p_cons 9.968215e-01   p_joint 3.747059e-04

Joint ci ratio: 1.095467e-01	ci left: 3.548005e-04	ci right 3.962023e-04	k: 1279	n:3410000
Cons ci ratio: 1.198608e-04	ci left: 9.967620e-01	ci right 9.968817e-01	k: 3399164	n:3410000
KS ci ratio: 1.095467e-01	ci left: 3.548005e-04	ci right 3.962023e-04	k: 1279	n:3410000
CHFR   3410000 perm   6019 sec   (567 perm/sec)   p_kst 3.750733e-04   p_cons 9.968223e-01   p_joint 3.750733e-04

Joint ci ratio: 1.095040e-01	ci left: 3.540474e-04	ci right 3.953442e-04	k: 1280	n:3420000
Cons ci ratio: 1.196922e-04	ci left: 9.967617e-01	ci right 9.968813e-01	k: 3409131	n:3420000
KS ci ratio: 1.095040e-01	ci left: 3.540474e-04	ci right 3.953442e-04	k: 1280	n:3420000
CHFR   3420000 perm   6052 sec   (565 perm/sec)   p_kst 3.742690e-04   p_cons 9.968219e-01   p_joint 3.742690e-04

Joint ci ratio: 1.093760e-01	ci left: 3.538659e-04	ci right 3.950902e-04	k: 1283	n:3430000
Cons ci ratio: 1.195077e-04	ci left: 9.967623e-01	ci right 9.968817e-01	k: 3419101	n:3430000
KS ci ratio: 1.093760e-01	ci left: 3.538659e-04	ci right 3.950902e-04	k: 1283	n:3430000
CHFR   3430000 perm   6085 sec   (564 perm/sec)   p_kst 3.740525e-04   p_cons 9.968224e-01   p_joint 3.740525e-04

Joint ci ratio: 1.091213e-01	ci left: 3.545338e-04	ci right 3.957335e-04	k: 1289	n:3440000
Cons ci ratio: 1.193023e-04	ci left: 9.967641e-01	ci right 9.968833e-01	k: 3429075	n:3440000
KS ci ratio: 1.091213e-01	ci left: 3.545338e-04	ci right 3.957335e-04	k: 1289	n:3440000
CHFR   3440000 perm   6119 sec   (562 perm/sec)   p_kst 3.747093e-04   p_cons 9.968241e-01   p_joint 3.747093e-04

Joint ci ratio: 1.089526e-01	ci left: 3.546339e-04	ci right 3.957775e-04	k: 1293	n:3450000
Cons ci ratio: 1.191360e-04	ci left: 9.967638e-01	ci right 9.968829e-01	k: 3439042	n:3450000
KS ci ratio: 1.089526e-01	ci left: 3.546339e-04	ci right 3.957775e-04	k: 1293	n:3450000
CHFR   3450000 perm   6153 sec   (561 perm/sec)   p_kst 3.747826e-04   p_cons 9.968238e-01   p_joint 3.747826e-04

Joint ci ratio: 1.087426e-01	ci left: 3.550147e-04	ci right 3.961180e-04	k: 1298	n:3460000
Cons ci ratio: 1.189921e-04	ci left: 9.967624e-01	ci right 9.968813e-01	k: 3449005	n:3460000
KS ci ratio: 1.087426e-01	ci left: 3.550147e-04	ci right 3.961180e-04	k: 1298	n:3460000
CHFR   3460000 perm   6186 sec   (559 perm/sec)   p_kst 3.751445e-04   p_cons 9.968223e-01   p_joint 3.751445e-04

Joint ci ratio: 1.086591e-01	ci left: 3.545523e-04	ci right 3.955685e-04	k: 1300	n:3470000
Cons ci ratio: 1.188650e-04	ci left: 9.967601e-01	ci right 9.968789e-01	k: 3458965	n:3470000
KS ci ratio: 1.086591e-01	ci left: 3.545523e-04	ci right 3.955685e-04	k: 1300	n:3470000
CHFR   3470000 perm   6220 sec   (558 perm/sec)   p_kst 3.746398e-04   p_cons 9.968199e-01   p_joint 3.746398e-04

Joint ci ratio: 1.086174e-01	ci left: 3.538130e-04	ci right 3.947270e-04	k: 1301	n:3480000
Cons ci ratio: 1.186574e-04	ci left: 9.967621e-01	ci right 9.968807e-01	k: 3468940	n:3480000
KS ci ratio: 1.086174e-01	ci left: 3.538130e-04	ci right 3.947270e-04	k: 1301	n:3480000
CHFR   3480000 perm   6254 sec   (556 perm/sec)   p_kst 3.738506e-04   p_cons 9.968218e-01   p_joint 3.738506e-04

Joint ci ratio: 1.083679e-01	ci left: 3.544718e-04	ci right 3.953618e-04	k: 1307	n:3490000
Cons ci ratio: 1.184349e-04	ci left: 9.967651e-01	ci right 9.968834e-01	k: 3478918	n:3490000
KS ci ratio: 1.083679e-01	ci left: 3.544718e-04	ci right 3.953618e-04	k: 1307	n:3490000
CHFR   3490000 perm   6287 sec   (555 perm/sec)   p_kst 3.744986e-04   p_cons 9.968246e-01   p_joint 3.744986e-04

Joint ci ratio: 1.081202e-01	ci left: 3.551269e-04	ci right 3.959928e-04	k: 1313	n:3500000
Cons ci ratio: 1.182882e-04	ci left: 9.967639e-01	ci right 9.968821e-01	k: 3488882	n:3500000
KS ci ratio: 1.081202e-01	ci left: 3.551269e-04	ci right 3.959928e-04	k: 1313	n:3500000
CHFR   3500000 perm   6322 sec   (554 perm/sec)   p_kst 3.751429e-04   p_cons 9.968234e-01   p_joint 3.751429e-04

Joint ci ratio: 1.077925e-01	ci left: 3.563328e-04	ci right 3.972054e-04	k: 1321	n:3510000
Cons ci ratio: 1.180996e-04	ci left: 9.967651e-01	ci right 9.968831e-01	k: 3498854	n:3510000
KS ci ratio: 1.077925e-01	ci left: 3.563328e-04	ci right 3.972054e-04	k: 1321	n:3510000
CHFR   3510000 perm   6356 sec   (552 perm/sec)   p_kst 3.763533e-04   p_cons 9.968245e-01   p_joint 3.763533e-04

Joint ci ratio: 1.076298e-01	ci left: 3.564263e-04	ci right 3.972439e-04	k: 1325	n:3520000
Cons ci ratio: 1.179277e-04	ci left: 9.967654e-01	ci right 9.968832e-01	k: 3508823	n:3520000
KS ci ratio: 1.076298e-01	ci left: 3.564263e-04	ci right 3.972439e-04	k: 1325	n:3520000
CHFR   3520000 perm   6390 sec   (551 perm/sec)   p_kst 3.764205e-04   p_cons 9.968247e-01   p_joint 3.764205e-04

Joint ci ratio: 1.073871e-01	ci left: 3.570706e-04	ci right 3.978640e-04	k: 1331	n:3530000
Cons ci ratio: 1.177829e-04	ci left: 9.967643e-01	ci right 9.968819e-01	k: 3518787	n:3530000
KS ci ratio: 1.073871e-01	ci left: 3.570706e-04	ci right 3.978640e-04	k: 1331	n:3530000
CHFR   3530000 perm   6423 sec   (550 perm/sec)   p_kst 3.770538e-04   p_cons 9.968235e-01   p_joint 3.770538e-04

Joint ci ratio: 1.071460e-01	ci left: 3.577113e-04	ci right 3.984804e-04	k: 1337	n:3540000
Cons ci ratio: 1.175757e-04	ci left: 9.967666e-01	ci right 9.968840e-01	k: 3528763	n:3540000
KS ci ratio: 1.071460e-01	ci left: 3.577113e-04	ci right 3.984804e-04	k: 1337	n:3540000
CHFR   3540000 perm   6458 sec   (548 perm/sec)   p_kst 3.776836e-04   p_cons 9.968257e-01   p_joint 3.776836e-04

Joint ci ratio: 1.070660e-01	ci left: 3.572520e-04	ci right 3.979364e-04	k: 1339	n:3550000
Cons ci ratio: 1.174061e-04	ci left: 9.967669e-01	ci right 9.968842e-01	k: 3538732	n:3550000
KS ci ratio: 1.070660e-01	ci left: 3.572520e-04	ci right 3.979364e-04	k: 1339	n:3550000
CHFR   3550000 perm   6493 sec   (547 perm/sec)   p_kst 3.771831e-04   p_cons 9.968259e-01   p_joint 3.771831e-04

Joint ci ratio: 1.069066e-01	ci left: 3.573420e-04	ci right 3.979722e-04	k: 1343	n:3560000
Cons ci ratio: 1.172164e-04	ci left: 9.967683e-01	ci right 9.968854e-01	k: 3548705	n:3560000
KS ci ratio: 1.069066e-01	ci left: 3.573420e-04	ci right 3.979722e-04	k: 1343	n:3560000
CHFR   3560000 perm   6527 sec   (545 perm/sec)   p_kst 3.772472e-04   p_cons 9.968272e-01   p_joint 3.772472e-04

Joint ci ratio: 1.067875e-01	ci left: 3.571589e-04	ci right 3.977203e-04	k: 1346	n:3570000
Cons ci ratio: 1.171157e-04	ci left: 9.967649e-01	ci right 9.968819e-01	k: 3558661	n:3570000
KS ci ratio: 1.067875e-01	ci left: 3.571589e-04	ci right 3.977203e-04	k: 1346	n:3570000
CHFR   3570000 perm   6561 sec   (544 perm/sec)   p_kst 3.770308e-04   p_cons 9.968238e-01   p_joint 3.770308e-04

Joint ci ratio: 1.066688e-01	ci left: 3.569769e-04	ci right 3.974697e-04	k: 1349	n:3580000
Cons ci ratio: 1.169119e-04	ci left: 9.967672e-01	ci right 9.968840e-01	k: 3568637	n:3580000
KS ci ratio: 1.066688e-01	ci left: 3.569769e-04	ci right 3.974697e-04	k: 1349	n:3580000
CHFR   3580000 perm   6596 sec   (543 perm/sec)   p_kst 3.768156e-04   p_cons 9.968260e-01   p_joint 3.768156e-04

Joint ci ratio: 1.065111e-01	ci left: 3.570670e-04	ci right 3.975064e-04	k: 1353	n:3590000
Cons ci ratio: 1.167349e-04	ci left: 9.967680e-01	ci right 9.968847e-01	k: 3578608	n:3590000
KS ci ratio: 1.065111e-01	ci left: 3.570670e-04	ci right 3.975064e-04	k: 1353	n:3590000
CHFR   3590000 perm   6631 sec   (541 perm/sec)   p_kst 3.768802e-04   p_cons 9.968267e-01   p_joint 3.768802e-04

Joint ci ratio: 1.063149e-01	ci left: 3.574271e-04	ci right 3.978281e-04	k: 1358	n:3600000
Cons ci ratio: 1.165996e-04	ci left: 9.967666e-01	ci right 9.968831e-01	k: 3588571	n:3600000
KS ci ratio: 1.063149e-01	ci left: 3.574271e-04	ci right 3.978281e-04	k: 1358	n:3600000
CHFR   3600000 perm   6665 sec   (540 perm/sec)   p_kst 3.772222e-04   p_cons 9.968253e-01   p_joint 3.772222e-04

Joint ci ratio: 1.060421e-01	ci left: 3.583246e-04	ci right 3.987166e-04	k: 1365	n:3610000
Cons ci ratio: 1.164341e-04	ci left: 9.967669e-01	ci right 9.968833e-01	k: 3598540	n:3610000
KS ci ratio: 1.060421e-01	ci left: 3.583246e-04	ci right 3.987166e-04	k: 1365	n:3610000
CHFR   3610000 perm   6700 sec   (539 perm/sec)   p_kst 3.781163e-04   p_cons 9.968255e-01   p_joint 3.781163e-04

Joint ci ratio: 1.060034e-01	ci left: 3.576036e-04	ci right 3.978987e-04	k: 1366	n:3620000
Cons ci ratio: 1.163404e-04	ci left: 9.967633e-01	ci right 9.968795e-01	k: 3608495	n:3620000
KS ci ratio: 1.060034e-01	ci left: 3.576036e-04	ci right 3.978987e-04	k: 1366	n:3620000
CHFR   3620000 perm   6736 sec   (537 perm/sec)   p_kst 3.773481e-04   p_cons 9.968218e-01   p_joint 3.773481e-04

Joint ci ratio: 1.058486e-01	ci left: 3.576912e-04	ci right 3.979337e-04	k: 1370	n:3630000
Cons ci ratio: 1.161256e-04	ci left: 9.967664e-01	ci right 9.968824e-01	k: 3618474	n:3630000
KS ci ratio: 1.058486e-01	ci left: 3.576912e-04	ci right 3.979337e-04	k: 1370	n:3630000
CHFR   3630000 perm   6770 sec   (536 perm/sec)   p_kst 3.774105e-04   p_cons 9.968248e-01   p_joint 3.774105e-04

Joint ci ratio: 1.057330e-01	ci left: 3.575109e-04	ci right 3.976864e-04	k: 1373	n:3640000
Cons ci ratio: 1.159521e-04	ci left: 9.967672e-01	ci right 9.968831e-01	k: 3628445	n:3640000
KS ci ratio: 1.057330e-01	ci left: 3.575109e-04	ci right 3.976864e-04	k: 1373	n:3640000
CHFR   3640000 perm   6806 sec   (535 perm/sec)   p_kst 3.771978e-04   p_cons 9.968255e-01   p_joint 3.771978e-04

Joint ci ratio: 1.055029e-01	ci left: 3.581319e-04	ci right 3.982841e-04	k: 1379	n:3650000
Cons ci ratio: 1.157744e-04	ci left: 9.967683e-01	ci right 9.968840e-01	k: 3638417	n:3650000
KS ci ratio: 1.055029e-01	ci left: 3.581319e-04	ci right 3.982841e-04	k: 1379	n:3650000
CHFR   3650000 perm   6842 sec   (533 perm/sec)   p_kst 3.778082e-04   p_cons 9.968266e-01   p_joint 3.778082e-04

Joint ci ratio: 1.053503e-01	ci left: 3.582175e-04	ci right 3.983176e-04	k: 1383	n:3660000
Cons ci ratio: 1.156224e-04	ci left: 9.967681e-01	ci right 9.968836e-01	k: 3648384	n:3660000
KS ci ratio: 1.053503e-01	ci left: 3.582175e-04	ci right 3.983176e-04	k: 1383	n:3660000
CHFR   3660000 perm   6878 sec   (532 perm/sec)   p_kst 3.778689e-04   p_cons 9.968262e-01   p_joint 3.778689e-04

Joint ci ratio: 1.051227e-01	ci left: 3.588332e-04	ci right 3.989102e-04	k: 1389	n:3670000
Cons ci ratio: 1.154611e-04	ci left: 9.967684e-01	ci right 9.968837e-01	k: 3658353	n:3670000
KS ci ratio: 1.051227e-01	ci left: 3.588332e-04	ci right 3.989102e-04	k: 1389	n:3670000
CHFR   3670000 perm   6913 sec   (531 perm/sec)   p_kst 3.784741e-04   p_cons 9.968264e-01   p_joint 3.784741e-04

Joint ci ratio: 1.050094e-01	ci left: 3.586519e-04	ci right 3.986628e-04	k: 1392	n:3680000
Cons ci ratio: 1.152856e-04	ci left: 9.967695e-01	ci right 9.968846e-01	k: 3668325	n:3680000
KS ci ratio: 1.050094e-01	ci left: 3.586519e-04	ci right 3.986628e-04	k: 1392	n:3680000
CHFR   3680000 perm   6949 sec   (530 perm/sec)   p_kst 3.782609e-04   p_cons 9.968274e-01   p_joint 3.782609e-04

Joint ci ratio: 1.048590e-01	ci left: 3.587356e-04	ci right 3.986949e-04	k: 1396	n:3690000
Cons ci ratio: 1.151356e-04	ci left: 9.967692e-01	ci right 9.968842e-01	k: 3678292	n:3690000
KS ci ratio: 1.048590e-01	ci left: 3.587356e-04	ci right 3.986949e-04	k: 1396	n:3690000
CHFR   3690000 perm   6984 sec   (528 perm/sec)   p_kst 3.783198e-04   p_cons 9.968271e-01   p_joint 3.783198e-04

Joint ci ratio: 1.046718e-01	ci left: 3.590819e-04	ci right 3.990040e-04	k: 1401	n:3700000
Cons ci ratio: 1.149615e-04	ci left: 9.967703e-01	ci right 9.968851e-01	k: 3688264	n:3700000
KS ci ratio: 1.046718e-01	ci left: 3.590819e-04	ci right 3.990040e-04	k: 1401	n:3700000
CHFR   3700000 perm   7020 sec   (527 perm/sec)   p_kst 3.786486e-04   p_cons 9.968281e-01   p_joint 3.786486e-04

Joint ci ratio: 1.044856e-01	ci left: 3.594265e-04	ci right 3.993115e-04	k: 1406	n:3710000
Cons ci ratio: 1.147785e-04	ci left: 9.967719e-01	ci right 9.968866e-01	k: 3698238	n:3710000
KS ci ratio: 1.044856e-01	ci left: 3.594265e-04	ci right 3.993115e-04	k: 1406	n:3710000
CHFR   3710000 perm   7056 sec   (526 perm/sec)   p_kst 3.789757e-04   p_cons 9.968296e-01   p_joint 3.789757e-04

Joint ci ratio: 1.042266e-01	ci left: 3.602929e-04	ci right 4.001689e-04	k: 1413	n:3720000
Cons ci ratio: 1.145963e-04	ci left: 9.967735e-01	ci right 9.968880e-01	k: 3708212	n:3720000
KS ci ratio: 1.042266e-01	ci left: 3.602929e-04	ci right 4.001689e-04	k: 1413	n:3720000
CHFR   3720000 perm   7091 sec   (525 perm/sec)   p_kst 3.798387e-04   p_cons 9.968312e-01   p_joint 3.798387e-04

Joint ci ratio: 1.041163e-01	ci left: 3.601103e-04	ci right 3.999213e-04	k: 1416	n:3730000
Cons ci ratio: 1.144392e-04	ci left: 9.967738e-01	ci right 9.968882e-01	k: 3718181	n:3730000
KS ci ratio: 1.041163e-01	ci left: 3.601103e-04	ci right 3.999213e-04	k: 1416	n:3730000
CHFR   3730000 perm   7127 sec   (523 perm/sec)   p_kst 3.796247e-04   p_cons 9.968314e-01   p_joint 3.796247e-04

Joint ci ratio: 1.040062e-01	ci left: 3.599287e-04	ci right 3.996750e-04	k: 1419	n:3740000
Cons ci ratio: 1.142489e-04	ci left: 9.967760e-01	ci right 9.968901e-01	k: 3728157	n:3740000
KS ci ratio: 1.040062e-01	ci left: 3.599287e-04	ci right 3.996750e-04	k: 1419	n:3740000
CHFR   3740000 perm   7163 sec   (522 perm/sec)   p_kst 3.794118e-04   p_cons 9.968334e-01   p_joint 3.794118e-04

Joint ci ratio: 1.037872e-01	ci left: 3.605274e-04	ci right 4.002508e-04	k: 1425	n:3750000
Cons ci ratio: 1.141318e-04	ci left: 9.967741e-01	ci right 9.968881e-01	k: 3738118	n:3750000
KS ci ratio: 1.037872e-01	ci left: 3.605274e-04	ci right 4.002508e-04	k: 1425	n:3750000
CHFR   3750000 perm   7199 sec   (521 perm/sec)   p_kst 3.800000e-04   p_cons 9.968315e-01   p_joint 3.800000e-04

Joint ci ratio: 1.037145e-01	ci left: 3.600866e-04	ci right 3.997320e-04	k: 1427	n:3760000
Cons ci ratio: 1.139862e-04	ci left: 9.967738e-01	ci right 9.968877e-01	k: 3748085	n:3760000
KS ci ratio: 1.037145e-01	ci left: 3.600866e-04	ci right 3.997320e-04	k: 1427	n:3760000
CHFR   3760000 perm   7235 sec   (520 perm/sec)   p_kst 3.795213e-04   p_cons 9.968311e-01   p_joint 3.795213e-04

Joint ci ratio: 1.036057e-01	ci left: 3.599066e-04	ci right 3.994881e-04	k: 1430	n:3770000
Cons ci ratio: 1.138125e-04	ci left: 9.967751e-01	ci right 9.968888e-01	k: 3758058	n:3770000
KS ci ratio: 1.036057e-01	ci left: 3.599066e-04	ci right 3.994881e-04	k: 1430	n:3770000
CHFR   3770000 perm   7271 sec   (518 perm/sec)   p_kst 3.793103e-04   p_cons 9.968324e-01   p_joint 3.793103e-04

Joint ci ratio: 1.034973e-01	ci left: 3.597276e-04	ci right 3.992454e-04	k: 1433	n:3780000
Cons ci ratio: 1.136730e-04	ci left: 9.967746e-01	ci right 9.968882e-01	k: 3768024	n:3780000
KS ci ratio: 1.034973e-01	ci left: 3.597276e-04	ci right 3.992454e-04	k: 1433	n:3780000
CHFR   3780000 perm   7308 sec   (517 perm/sec)   p_kst 3.791005e-04   p_cons 9.968317e-01   p_joint 3.791005e-04

Joint ci ratio: 1.034252e-01	ci left: 3.592925e-04	ci right 3.987334e-04	k: 1435	n:3790000
Cons ci ratio: 1.134817e-04	ci left: 9.967770e-01	ci right 9.968903e-01	k: 3778001	n:3790000
KS ci ratio: 1.034252e-01	ci left: 3.592925e-04	ci right 3.987334e-04	k: 1435	n:3790000
CHFR   3790000 perm   7344 sec   (516 perm/sec)   p_kst 3.786280e-04   p_cons 9.968340e-01   p_joint 3.786280e-04

Joint ci ratio: 1.032098e-01	ci left: 3.598851e-04	ci right 3.993038e-04	k: 1441	n:3800000
Cons ci ratio: 1.133008e-04	ci left: 9.967788e-01	ci right 9.968920e-01	k: 3787976	n:3800000
KS ci ratio: 1.032098e-01	ci left: 3.598851e-04	ci right 3.993038e-04	k: 1441	n:3800000
CHFR   3800000 perm   7383 sec   (515 perm/sec)   p_kst 3.792105e-04   p_cons 9.968358e-01   p_joint 3.792105e-04

Joint ci ratio: 1.031741e-01	ci left: 3.591962e-04	ci right 3.985250e-04	k: 1442	n:3810000
Cons ci ratio: 1.131443e-04	ci left: 9.967793e-01	ci right 9.968924e-01	k: 3797946	n:3810000
KS ci ratio: 1.031741e-01	ci left: 3.591962e-04	ci right 3.985250e-04	k: 1442	n:3810000
CHFR   3810000 perm   7419 sec   (514 perm/sec)   p_kst 3.784777e-04   p_cons 9.968362e-01   p_joint 3.784777e-04

Joint ci ratio: 1.030314e-01	ci left: 3.592760e-04	ci right 3.985558e-04	k: 1446	n:3820000
Cons ci ratio: 1.129790e-04	ci left: 9.967804e-01	ci right 9.968932e-01	k: 3807918	n:3820000
KS ci ratio: 1.030314e-01	ci left: 3.592760e-04	ci right 3.985558e-04	k: 1446	n:3820000
CHFR   3820000 perm   7457 sec   (512 perm/sec)   p_kst 3.785340e-04   p_cons 9.968372e-01   p_joint 3.785340e-04

Joint ci ratio: 1.028184e-01	ci left: 3.598642e-04	ci right 3.991221e-04	k: 1452	n:3830000
Cons ci ratio: 1.128145e-04	ci left: 9.967814e-01	ci right 9.968941e-01	k: 3817890	n:3830000
KS ci ratio: 1.028184e-01	ci left: 3.598642e-04	ci right 3.991221e-04	k: 1452	n:3830000
CHFR   3830000 perm   7494 sec   (511 perm/sec)   p_kst 3.791123e-04   p_cons 9.968381e-01   p_joint 3.791123e-04

Joint ci ratio: 1.025716e-01	ci left: 3.607032e-04	ci right 3.999524e-04	k: 1459	n:3840000
Cons ci ratio: 1.126553e-04	ci left: 9.967821e-01	ci right 9.968947e-01	k: 3827861	n:3840000
KS ci ratio: 1.025716e-01	ci left: 3.607032e-04	ci right 3.999524e-04	k: 1459	n:3840000
CHFR   3840000 perm   7532 sec   (510 perm/sec)   p_kst 3.799479e-04   p_cons 9.968388e-01   p_joint 3.799479e-04

Joint ci ratio: 1.023964e-01	ci left: 3.610317e-04	ci right 4.002456e-04	k: 1464	n:3850000
Cons ci ratio: 1.125153e-04	ci left: 9.967819e-01	ci right 9.968943e-01	k: 3837828	n:3850000
KS ci ratio: 1.023964e-01	ci left: 3.610317e-04	ci right 4.002456e-04	k: 1464	n:3850000
CHFR   3850000 perm   7569 sec   (509 perm/sec)   p_kst 3.802597e-04   p_cons 9.968384e-01   p_joint 3.802597e-04

Joint ci ratio: 1.023266e-01	ci left: 3.606013e-04	ci right 3.997401e-04	k: 1466	n:3860000
Cons ci ratio: 1.123989e-04	ci left: 9.967803e-01	ci right 9.968926e-01	k: 3847790	n:3860000
KS ci ratio: 1.023266e-01	ci left: 3.606013e-04	ci right 3.997401e-04	k: 1466	n:3860000
CHFR   3860000 perm   7606 sec   (508 perm/sec)   p_kst 3.797927e-04   p_cons 9.968368e-01   p_joint 3.797927e-04

Joint ci ratio: 1.022917e-01	ci left: 3.599213e-04	ci right 3.989722e-04	k: 1467	n:3870000
Cons ci ratio: 1.122369e-04	ci left: 9.967813e-01	ci right 9.968934e-01	k: 3857762	n:3870000
KS ci ratio: 1.022917e-01	ci left: 3.599213e-04	ci right 3.989722e-04	k: 1467	n:3870000
CHFR   3870000 perm   7644 sec   (506 perm/sec)   p_kst 3.790698e-04   p_cons 9.968377e-01   p_joint 3.790698e-04

Joint ci ratio: 1.022222e-01	ci left: 3.594959e-04	ci right 3.984725e-04	k: 1469	n:3880000
Cons ci ratio: 1.120985e-04	ci left: 9.967810e-01	ci right 9.968930e-01	k: 3867729	n:3880000
KS ci ratio: 1.022222e-01	ci left: 3.594959e-04	ci right 3.984725e-04	k: 1469	n:3880000
CHFR   3880000 perm   7681 sec   (505 perm/sec)   p_kst 3.786082e-04   p_cons 9.968374e-01   p_joint 3.786082e-04

Joint ci ratio: 1.021180e-01	ci left: 3.593233e-04	ci right 3.982391e-04	k: 1472	n:3890000
Cons ci ratio: 1.119788e-04	ci left: 9.967797e-01	ci right 9.968916e-01	k: 3877692	n:3890000
KS ci ratio: 1.021180e-01	ci left: 3.593233e-04	ci right 3.982391e-04	k: 1472	n:3890000
CHFR   3890000 perm   7719 sec   (504 perm/sec)   p_kst 3.784062e-04   p_cons 9.968360e-01   p_joint 3.784062e-04

Joint ci ratio: 1.018762e-01	ci left: 3.601510e-04	ci right 3.990586e-04	k: 1479	n:3900000
Cons ci ratio: 1.118867e-04	ci left: 9.967768e-01	ci right 9.968886e-01	k: 3887649	n:3900000
KS ci ratio: 1.018762e-01	ci left: 3.601510e-04	ci right 3.990586e-04	k: 1479	n:3900000
CHFR   3900000 perm   7758 sec   (503 perm/sec)   p_kst 3.792308e-04   p_cons 9.968331e-01   p_joint 3.792308e-04

Joint ci ratio: 1.016703e-01	ci left: 3.607254e-04	ci right 3.996116e-04	k: 1485	n:3910000
Cons ci ratio: 1.117722e-04	ci left: 9.967753e-01	ci right 9.968869e-01	k: 3897611	n:3910000
KS ci ratio: 1.016703e-01	ci left: 3.607254e-04	ci right 3.996116e-04	k: 1485	n:3910000
CHFR   3910000 perm   7796 sec   (502 perm/sec)   p_kst 3.797954e-04   p_cons 9.968315e-01   p_joint 3.797954e-04

Joint ci ratio: 1.016020e-01	ci left: 3.603024e-04	ci right 3.991153e-04	k: 1487	n:3920000
Cons ci ratio: 1.115814e-04	ci left: 9.967781e-01	ci right 9.968896e-01	k: 3907590	n:3920000
KS ci ratio: 1.016020e-01	ci left: 3.603024e-04	ci right 3.991153e-04	k: 1487	n:3920000
CHFR   3920000 perm   7833 sec   (500 perm/sec)   p_kst 3.793367e-04   p_cons 9.968342e-01   p_joint 3.793367e-04

Joint ci ratio: 1.013977e-01	ci left: 3.608736e-04	ci right 3.996652e-04	k: 1493	n:3930000
Cons ci ratio: 1.114139e-04	ci left: 9.967796e-01	ci right 9.968909e-01	k: 3917564	n:3930000
KS ci ratio: 1.013977e-01	ci left: 3.608736e-04	ci right 3.996652e-04	k: 1493	n:3930000
CHFR   3930000 perm   7870 sec   (499 perm/sec)   p_kst 3.798982e-04   p_cons 9.968356e-01   p_joint 3.798982e-04

Joint ci ratio: 1.013299e-01	ci left: 3.604524e-04	ci right 3.991713e-04	k: 1495	n:3940000
Cons ci ratio: 1.112471e-04	ci left: 9.967811e-01	ci right 9.968923e-01	k: 3927538	n:3940000
KS ci ratio: 1.013299e-01	ci left: 3.604524e-04	ci right 3.991713e-04	k: 1495	n:3940000
CHFR   3940000 perm   7907 sec   (498 perm/sec)   p_kst 3.794416e-04   p_cons 9.968371e-01   p_joint 3.794416e-04

Joint ci ratio: 1.012623e-01	ci left: 3.600333e-04	ci right 3.986799e-04	k: 1497	n:3950000
Cons ci ratio: 1.110989e-04	ci left: 9.967816e-01	ci right 9.968926e-01	k: 3937508	n:3950000
KS ci ratio: 1.012623e-01	ci left: 3.600333e-04	ci right 3.986799e-04	k: 1497	n:3950000
CHFR   3950000 perm   7944 sec   (497 perm/sec)   p_kst 3.789873e-04   p_cons 9.968375e-01   p_joint 3.789873e-04

Joint ci ratio: 1.011611e-01	ci left: 3.598626e-04	ci right 3.984499e-04	k: 1500	n:3960000
Cons ci ratio: 1.110047e-04	ci left: 9.967790e-01	ci right 9.968899e-01	k: 3947466	n:3960000
KS ci ratio: 1.011611e-01	ci left: 3.598626e-04	ci right 3.984499e-04	k: 1500	n:3960000
CHFR   3960000 perm   7985 sec   (496 perm/sec)   p_kst 3.787879e-04   p_cons 9.968348e-01   p_joint 3.787879e-04

Joint ci ratio: 1.010601e-01	ci left: 3.596927e-04	ci right 3.982210e-04	k: 1503	n:3970000
Cons ci ratio: 1.108707e-04	ci left: 9.967788e-01	ci right 9.968895e-01	k: 3957433	n:3970000
KS ci ratio: 1.010601e-01	ci left: 3.596927e-04	ci right 3.982210e-04	k: 1503	n:3970000
CHFR   3970000 perm   8024 sec   (495 perm/sec)   p_kst 3.785894e-04   p_cons 9.968345e-01   p_joint 3.785894e-04

Joint ci ratio: 1.009930e-01	ci left: 3.592787e-04	ci right 3.977357e-04	k: 1505	n:3980000
Cons ci ratio: 1.106976e-04	ci left: 9.967808e-01	ci right 9.968914e-01	k: 3967409	n:3980000
KS ci ratio: 1.009930e-01	ci left: 3.592787e-04	ci right 3.977357e-04	k: 1505	n:3980000
CHFR   3980000 perm   8065 sec   (494 perm/sec)   p_kst 3.781407e-04   p_cons 9.968364e-01   p_joint 3.781407e-04

Joint ci ratio: 1.009260e-01	ci left: 3.588669e-04	ci right 3.972527e-04	k: 1507	n:3990000
Cons ci ratio: 1.105736e-04	ci left: 9.967800e-01	ci right 9.968905e-01	k: 3977374	n:3990000
KS ci ratio: 1.009260e-01	ci left: 3.588669e-04	ci right 3.972527e-04	k: 1507	n:3990000
CHFR   3990000 perm   8103 sec   (492 perm/sec)   p_kst 3.776942e-04   p_cons 9.968356e-01   p_joint 3.776942e-04

Joint ci ratio: 1.007258e-01	ci left: 3.594319e-04	ci right 3.977974e-04	k: 1513	n:4000000
Cons ci ratio: 1.104149e-04	ci left: 9.967812e-01	ci right 9.968915e-01	k: 3987347	n:4000000
KS ci ratio: 1.007258e-01	ci left: 3.594319e-04	ci right 3.977974e-04	k: 1513	n:4000000
CHFR   4000000 perm   8140 sec   (491 perm/sec)   p_kst 3.782500e-04   p_cons 9.968368e-01   p_joint 3.782500e-04

Joint ci ratio: 1.006262e-01	ci left: 3.592648e-04	ci right 3.975724e-04	k: 1516	n:4010000
Cons ci ratio: 1.102351e-04	ci left: 9.967837e-01	ci right 9.968939e-01	k: 3997325	n:4010000
KS ci ratio: 1.006262e-01	ci left: 3.592648e-04	ci right 3.975724e-04	k: 1516	n:4010000
CHFR   4010000 perm   8179 sec   (490 perm/sec)   p_kst 3.780549e-04   p_cons 9.968392e-01   p_joint 3.780549e-04

Joint ci ratio: 1.005269e-01	ci left: 3.590986e-04	ci right 3.973484e-04	k: 1519	n:4020000
Cons ci ratio: 1.100649e-04	ci left: 9.967857e-01	ci right 9.968957e-01	k: 4007301	n:4020000
KS ci ratio: 1.005269e-01	ci left: 3.590986e-04	ci right 3.973484e-04	k: 1519	n:4020000
CHFR   4020000 perm   8217 sec   (489 perm/sec)   p_kst 3.778607e-04   p_cons 9.968410e-01   p_joint 3.778607e-04

Joint ci ratio: 1.005269e-01	ci left: 3.582076e-04	ci right 3.963624e-04	k: 1519	n:4030000
Cons ci ratio: 1.099083e-04	ci left: 9.967869e-01	ci right 9.968967e-01	k: 4017274	n:4030000
KS ci ratio: 1.005269e-01	ci left: 3.582076e-04	ci right 3.963624e-04	k: 1519	n:4030000
CHFR   4030000 perm   8257 sec   (488 perm/sec)   p_kst 3.769231e-04   p_cons 9.968422e-01   p_joint 3.769231e-04

Joint ci ratio: 1.005269e-01	ci left: 3.573209e-04	ci right 3.953814e-04	k: 1519	n:4040000
Cons ci ratio: 1.097783e-04	ci left: 9.967866e-01	ci right 9.968963e-01	k: 4027241	n:4040000
KS ci ratio: 1.005269e-01	ci left: 3.573209e-04	ci right 3.953814e-04	k: 1519	n:4040000
CHFR   4040000 perm   8296 sec   (487 perm/sec)   p_kst 3.759901e-04   p_cons 9.968418e-01   p_joint 3.759901e-04

Joint ci ratio: 1.003949e-01	ci left: 3.574015e-04	ci right 3.954176e-04	k: 1523	n:4050000
Cons ci ratio: 1.096488e-04	ci left: 9.967864e-01	ci right 9.968959e-01	k: 4037208	n:4050000
KS ci ratio: 1.003949e-01	ci left: 3.574015e-04	ci right 3.954176e-04	k: 1523	n:4050000
CHFR   4050000 perm   8335 sec   (486 perm/sec)   p_kst 3.760494e-04   p_cons 9.968415e-01   p_joint 3.760494e-04

Joint ci ratio: 1.003620e-01	ci left: 3.567613e-04	ci right 3.946961e-04	k: 1524	n:4060000
Cons ci ratio: 1.094941e-04	ci left: 9.967876e-01	ci right 9.968970e-01	k: 4047181	n:4060000
KS ci ratio: 1.003620e-01	ci left: 3.567613e-04	ci right 3.946961e-04	k: 1524	n:4060000
CHFR   4060000 perm   8375 sec   (485 perm/sec)   p_kst 3.753695e-04   p_cons 9.968426e-01   p_joint 3.753695e-04

Joint ci ratio: 1.002963e-01	ci left: 3.563638e-04	ci right 3.942301e-04	k: 1526	n:4070000
Cons ci ratio: 1.093527e-04	ci left: 9.967880e-01	ci right 9.968973e-01	k: 4057151	n:4070000
KS ci ratio: 1.002963e-01	ci left: 3.563638e-04	ci right 3.942301e-04	k: 1526	n:4070000
CHFR   4070000 perm   8414 sec   (484 perm/sec)   p_kst 3.749386e-04   p_cons 9.968430e-01   p_joint 3.749386e-04

Joint ci ratio: 1.000998e-01	ci left: 3.569241e-04	ci right 3.947713e-04	k: 1532	n:4080000
Cons ci ratio: 1.092162e-04	ci left: 9.967882e-01	ci right 9.968973e-01	k: 4067120	n:4080000
KS ci ratio: 1.000998e-01	ci left: 3.569241e-04	ci right 3.947713e-04	k: 1532	n:4080000
CHFR   4080000 perm   8454 sec   (483 perm/sec)   p_kst 3.754902e-04   p_cons 9.968431e-01   p_joint 3.754902e-04

Joint ci ratio: 1.000020e-01	ci left: 3.567666e-04	ci right 3.945579e-04	k: 1535	n:4090000
Cons ci ratio: 1.091225e-04	ci left: 9.967860e-01	ci right 9.968950e-01	k: 4077079	n:4090000
KS ci ratio: 1.000020e-01	ci left: 3.567666e-04	ci right 3.945579e-04	k: 1535	n:4090000
CHFR   4090000 perm   8494 sec   (482 perm/sec)   p_kst 3.753056e-04   p_cons 9.968408e-01   p_joint 3.753056e-04

Joint ci ratio: 9.987208e-02	ci left: 3.568476e-04	ci right 3.945955e-04	k: 1539	n:4100000
Cons ci ratio: 1.089784e-04	ci left: 9.967867e-01	ci right 9.968955e-01	k: 4087050	n:4100000
KS ci ratio: 9.987208e-02	ci left: 3.568476e-04	ci right 3.945955e-04	k: 1539	n:4100000
CHFR   4100000 perm   8533 sec   (481 perm/sec)   p_kst 3.753659e-04   p_cons 9.968415e-01   p_joint 3.753659e-04

Outputting figure to mutsig2_images.part000000000037/CHFR.3_2160_4100000_0.00037537_0.99684_0.00037537.png
                gene_name: CHFR
               theta_stop: 0.100 
                    nperm: 4100000 
                     p_ks: 0.00038 
        ci_ks_bounds_left: 0.00036 
       ci_ks_bounds_right: 0.00039 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.00038 
     ci_joint_bounds_left: 0.00036 
    ci_joint_bounds_right: 0.00039 

Current progress: 61 percent done.
CHM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.959290e-03	ci left: 9.744004e-01	ci right 9.803170e-01	k: 9775	n:10000
KS ci ratio: 1.821783e-02	ci left: 8.147659e-01	ci right 8.298458e-01	k: 8224	n:10000
CHM   10000 perm   2 sec   (5581 perm/sec)   p_kst 8.224000e-01   p_cons 9.775000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000037/CHM.3_2045_10000_0.8224_0.9775_1.png
                gene_name: CHM
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 64 percent done.
CHORDC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.296213e-03	ci left: 9.628897e-01	ci right 9.700352e-01	k: 9666	n:10000
Cons ci ratio: 2.740328e-02	ci left: 6.623971e-01	ci right 6.809028e-01	k: 6717	n:10000
KS ci ratio: 2.194986e-02	ci left: 7.528195e-01	ci right 7.696281e-01	k: 7613	n:10000
CHORDC1   10000 perm   2 sec   (6206 perm/sec)   p_kst 7.613000e-01   p_cons 6.717000e-01   p_joint 9.666000e-01

Outputting figure to mutsig2_images.part000000000037/CHORDC1.3_1043_10000_0.7613_0.6717_0.9666.png
                gene_name: CHORDC1
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 66 percent done.
CHRM5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.362230e-02	ci left: 8.860594e-01	ci right 8.983110e-01	k: 8923	n:10000
Cons ci ratio: 1.813674e-02	ci left: 8.160871e-01	ci right 8.311239e-01	k: 8237	n:10000
KS ci ratio: 3.299240e-02	ci left: 5.755702e-01	ci right 5.949801e-01	k: 5853	n:10000
CHRM5   10000 perm   2 sec   (6084 perm/sec)   p_kst 5.853000e-01   p_cons 8.237000e-01   p_joint 8.923000e-01

Outputting figure to mutsig2_images.part000000000037/CHRM5.3_1603_10000_0.5853_0.8237_0.8923.png
                gene_name: CHRM5
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 68 percent done.
CHRNA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.325900e-01	ci left: 1.142242e-02	ci right 1.606722e-02	k: 136	n:10000
Cons ci ratio: 3.909237e-02	ci left: 4.914510e-01	ci right 5.111482e-01	k: 5013	n:10000
KS ci ratio: 3.428867e-01	ci left: 1.068957e-02	ci right 1.520079e-02	k: 128	n:10000
CHRNA3   10000 perm   2 sec   (6125 perm/sec)   p_kst 1.280000e-02   p_cons 5.013000e-01   p_joint 1.360000e-02

Joint ci ratio: 2.002444e-01	ci left: 1.691536e-02	ci right 2.072636e-02	k: 375	n:20000
Cons ci ratio: 2.783593e-02	ci left: 4.908963e-01	ci right 5.048043e-01	k: 9957	n:20000
KS ci ratio: 2.187629e-01	ci left: 1.407013e-02	ci right 1.757269e-02	k: 315	n:20000
CHRNA3   20000 perm   4 sec   (5329 perm/sec)   p_kst 1.575000e-02   p_cons 4.978500e-01   p_joint 1.875000e-02

Joint ci ratio: 1.580197e-01	ci left: 1.850980e-02	ci right 2.171742e-02	k: 602	n:30000
Cons ci ratio: 2.282646e-02	ci left: 4.900263e-01	ci right 5.013746e-01	k: 14871	n:30000
KS ci ratio: 1.771081e-01	ci left: 1.464237e-02	ci right 1.751912e-02	k: 481	n:30000
CHRNA3   30000 perm   6 sec   (5044 perm/sec)   p_kst 1.603333e-02   p_cons 4.957000e-01   p_joint 2.006667e-02

Joint ci ratio: 1.314456e-01	ci left: 2.031864e-02	ci right 2.320137e-02	k: 869	n:40000
Cons ci ratio: 1.983885e-02	ci left: 4.890135e-01	ci right 4.988373e-01	k: 19757	n:40000
KS ci ratio: 1.512035e-01	ci left: 1.527431e-02	ci right 1.779658e-02	k: 660	n:40000
CHRNA3   40000 perm   8 sec   (4862 perm/sec)   p_kst 1.650000e-02   p_cons 4.939250e-01   p_joint 2.172500e-02

Joint ci ratio: 1.209969e-01	ci left: 1.931465e-02	ci right 2.182145e-02	k: 1027	n:50000
Cons ci ratio: 1.772911e-02	ci left: 4.899681e-01	ci right 4.987526e-01	k: 24718	n:50000
KS ci ratio: 1.355958e-01	ci left: 1.532422e-02	ci right 1.757243e-02	k: 821	n:50000
CHRNA3   50000 perm   11 sec   (4709 perm/sec)   p_kst 1.642000e-02   p_cons 4.943600e-01   p_joint 2.054000e-02

Joint ci ratio: 1.098922e-01	ci left: 1.962430e-02	ci right 2.192238e-02	k: 1245	n:60000
Cons ci ratio: 1.617940e-02	ci left: 4.905082e-01	ci right 4.985257e-01	k: 29671	n:60000
KS ci ratio: 1.234893e-01	ci left: 1.549580e-02	ci right 1.755134e-02	k: 990	n:60000
CHRNA3   60000 perm   13 sec   (4582 perm/sec)   p_kst 1.650000e-02   p_cons 4.945167e-01   p_joint 2.075000e-02

Joint ci ratio: 1.036372e-01	ci left: 1.898960e-02	ci right 2.107903e-02	k: 1401	n:70000
Cons ci ratio: 1.496180e-02	ci left: 4.913893e-01	ci right 4.988111e-01	k: 34657	n:70000
KS ci ratio: 1.147417e-01	ci left: 1.545819e-02	ci right 1.735363e-02	k: 1147	n:70000
CHRNA3   70000 perm   16 sec   (4472 perm/sec)   p_kst 1.638571e-02   p_cons 4.951000e-01   p_joint 2.001429e-02

Joint ci ratio: 1.080026e-01	ci left: 1.532435e-02	ci right 1.708599e-02	k: 1295	n:80000
Cons ci ratio: 1.400322e-02	ci left: 4.913544e-01	ci right 4.982960e-01	k: 39586	n:80000
KS ci ratio: 1.080026e-01	ci left: 1.532435e-02	ci right 1.708599e-02	k: 1295	n:80000
CHRNA3   80000 perm   18 sec   (4368 perm/sec)   p_kst 1.618750e-02   p_cons 4.948250e-01   p_joint 1.618750e-02

Joint ci ratio: 1.013675e-01	ci left: 1.551528e-02	ci right 1.718277e-02	k: 1470	n:90000
Cons ci ratio: 1.320540e-02	ci left: 4.914393e-01	ci right 4.979832e-01	k: 44524	n:90000
KS ci ratio: 1.013675e-01	ci left: 1.551528e-02	ci right 1.718277e-02	k: 1470	n:90000
CHRNA3   90000 perm   21 sec   (4279 perm/sec)   p_kst 1.633333e-02   p_cons 4.947111e-01   p_joint 1.633333e-02

Joint ci ratio: 9.672206e-02	ci left: 1.537779e-02	ci right 1.695045e-02	k: 1615	n:100000
Cons ci ratio: 1.254183e-02	ci left: 4.910464e-01	ci right 4.972539e-01	k: 49415	n:100000
KS ci ratio: 9.672206e-02	ci left: 1.537779e-02	ci right 1.695045e-02	k: 1615	n:100000
CHRNA3   100000 perm   24 sec   (4189 perm/sec)   p_kst 1.615000e-02   p_cons 4.941500e-01   p_joint 1.615000e-02

Outputting figure to mutsig2_images.part000000000037/CHRNA3.3_1627_100000_0.01615_0.49415_0.01615.png
                gene_name: CHRNA3
               theta_stop: 0.097 
                    nperm: 100000 
                     p_ks: 0.016 
        ci_ks_bounds_left: 0.015 
       ci_ks_bounds_right: 0.017 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.016 
     ci_joint_bounds_left: 0.015 
    ci_joint_bounds_right: 0.017 

Current progress: 70 percent done.
CHRNA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.573434e-02	ci left: 6.897011e-01	ci right 7.077830e-01	k: 6988	n:10000
Cons ci ratio: 4.689887e-02	ci left: 4.015330e-01	ci right 4.209187e-01	k: 4112	n:10000
KS ci ratio: 3.613146e-02	ci left: 5.307719e-01	ci right 5.504044e-01	k: 5406	n:10000
CHRNA4   10000 perm   2 sec   (5582 perm/sec)   p_kst 5.406000e-01   p_cons 4.112000e-01   p_joint 6.988000e-01

Outputting figure to mutsig2_images.part000000000037/CHRNA4.3_1908_10000_0.5406_0.4112_0.6988.png
                gene_name: CHRNA4
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 73 percent done.
CHRNA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.385883e-02	ci left: 4.342293e-01	ci right 4.538033e-01	k: 4440	n:10000
KS ci ratio: 1.411309e-02	ci left: 8.788919e-01	ci right 8.914828e-01	k: 8853	n:10000
CHRNA6   10000 perm   2 sec   (5659 perm/sec)   p_kst 8.853000e-01   p_cons 4.440000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000037/CHRNA6.3_1509_10000_0.8853_0.444_1.png
                gene_name: CHRNA6
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
CGRRF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.017928e-02	ci left: 2.888472e-01	ci right 3.068707e-01	k: 2978	n:10000
Cons ci ratio: 9.237174e-02	ci left: 1.455058e-01	ci right 1.596972e-01	k: 1525	n:10000
KS ci ratio: 4.029101e-02	ci left: 4.763591e-01	ci right 4.960489e-01	k: 4862	n:10000
CGRRF1   10000 perm   2 sec   (6479 perm/sec)   p_kst 4.862000e-01   p_cons 1.525000e-01   p_joint 2.978000e-01

Outputting figure to mutsig2_images.part000000000037/CGRRF1.2_1023_10000_0.4862_0.1525_0.2978.png
                gene_name: CGRRF1
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 77 percent done.
CHAC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.944842e-02	ci left: 6.296981e-01	ci right 6.486207e-01	k: 6392	n:10000
Cons ci ratio: 9.262005e-03	ci left: 9.426349e-01	ci right 9.515024e-01	k: 9472	n:10000
KS ci ratio: 3.973073e-02	ci left: 4.833543e-01	ci right 5.030497e-01	k: 4932	n:10000
CHAC2   10000 perm   2 sec   (6637 perm/sec)   p_kst 4.932000e-01   p_cons 9.472000e-01   p_joint 6.392000e-01

Outputting figure to mutsig2_images.part000000000037/CHAC2.2_567_10000_0.4932_0.9472_0.6392.png
                gene_name: CHAC2
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 80 percent done.
CHD1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.439399e-03	ci left: 9.783435e-01	ci right 9.837711e-01	k: 9812	n:10000
Cons ci ratio: 6.350447e-02	ci left: 2.670569e-01	ci right 2.846738e-01	k: 2758	n:10000
KS ci ratio: 1.702089e-02	ci left: 8.340910e-01	ci right 8.485096e-01	k: 8414	n:10000
CHD1L   10000 perm   2 sec   (5277 perm/sec)   p_kst 8.414000e-01   p_cons 2.758000e-01   p_joint 9.812000e-01

Outputting figure to mutsig2_images.part000000000037/CHD1L.2_2786_10000_0.8414_0.2758_0.9812.png
                gene_name: CHD1L
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 82 percent done.
CHD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.798932e-02	ci left: 1.582644e-01	ci right 1.729310e-01	k: 1655	n:10000
KS ci ratio: 3.837967e-02	ci left: 5.006505e-01	ci right 5.203434e-01	k: 5105	n:10000
CHD3   10000 perm   3 sec   (3913 perm/sec)   p_kst 5.105000e-01   p_cons 1.655000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000037/CHD3.2_6444_10000_0.5105_0.1655_1.png
                gene_name: CHD3
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
CHGA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.162861e-02	ci left: 4.600779e-01	ci right 4.797396e-01	k: 4699	n:10000
Cons ci ratio: 2.992248e-02	ci left: 6.222595e-01	ci right 6.412637e-01	k: 6318	n:10000
KS ci ratio: 1.450035e-01	ci left: 6.314223e-02	ci right 7.311115e-02	k: 680	n:10000
CHGA   10000 perm   2 sec   (6247 perm/sec)   p_kst 6.800000e-02   p_cons 6.318000e-01   p_joint 4.699000e-01

Joint ci ratio: 5.022733e-02	ci left: 2.275518e-01	ci right 2.393258e-01	k: 4668	n:20000
Cons ci ratio: 2.190239e-02	ci left: 6.088168e-01	ci right 6.223496e-01	k: 12312	n:20000
KS ci ratio: 1.059125e-01	ci left: 6.069528e-02	ci right 6.753211e-02	k: 1281	n:20000
CHGA   20000 perm   4 sec   (5463 perm/sec)   p_kst 6.405000e-02   p_cons 6.156000e-01   p_joint 2.334000e-01

Joint ci ratio: 3.379936e-02	ci left: 3.043040e-01	ci right 3.147996e-01	k: 9286	n:30000
Cons ci ratio: 1.789360e-02	ci left: 6.098004e-01	ci right 6.208440e-01	k: 18460	n:30000
KS ci ratio: 8.730545e-02	ci left: 6.021111e-02	ci right 6.574056e-02	k: 1888	n:30000
CHGA   30000 perm   6 sec   (5193 perm/sec)   p_kst 6.293333e-02   p_cons 6.153333e-01   p_joint 3.095333e-01

Outputting figure to mutsig2_images.part000000000037/CHGA.2_1406_30000_0.062933_0.61533_0.30953.png
                gene_name: CHGA
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.063 
        ci_ks_bounds_left: 0.060 
       ci_ks_bounds_right: 0.066 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 86 percent done.
CHI3L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.614730e-02	ci left: 3.184024e-01	ci right 3.368981e-01	k: 3276	n:10000
Cons ci ratio: 1.089551e-01	ci left: 1.083220e-01	ci right 1.209034e-01	k: 1145	n:10000
KS ci ratio: 2.126700e-02	ci left: 7.642560e-01	ci right 7.807849e-01	k: 7726	n:10000
CHI3L2   10000 perm   2 sec   (6514 perm/sec)   p_kst 7.726000e-01   p_cons 1.145000e-01   p_joint 3.276000e-01

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 7.725382e-02	ci left: 1.096268e-01	ci right 1.184858e-01	k: 2280	n:20000
KS ci ratio: 1.480676e-02	ci left: 7.721751e-01	ci right 7.837440e-01	k: 15560	n:20000
CHI3L2   20000 perm   3 sec   (5735 perm/sec)   p_kst 7.780000e-01   p_cons 1.140000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000037/CHI3L2.2_1213_20000_0.778_0.114_1.png
                gene_name: CHI3L2
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
CHML
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.561562e-02	ci left: 4.149851e-01	ci right 4.344588e-01	k: 4247	n:10000
Cons ci ratio: 9.830757e-03	ci left: 9.360983e-01	ci right 9.454429e-01	k: 9409	n:10000
KS ci ratio: 1.044753e-01	ci left: 1.169164e-01	ci right 1.299039e-01	k: 1233	n:10000
CHML   10000 perm   2 sec   (6062 perm/sec)   p_kst 1.233000e-01   p_cons 9.409000e-01   p_joint 4.247000e-01

Joint ci ratio: 2.359337e-02	ci left: 5.729732e-01	ci right 5.867036e-01	k: 11597	n:20000
Cons ci ratio: 6.798060e-03	ci left: 9.400048e-01	ci right 9.464655e-01	k: 18866	n:20000
KS ci ratio: 7.308482e-02	ci left: 1.211352e-01	ci right 1.303739e-01	k: 2514	n:20000
CHML   20000 perm   4 sec   (5290 perm/sec)   p_kst 1.257000e-01   p_cons 9.433000e-01   p_joint 5.798500e-01

Outputting figure to mutsig2_images.part000000000037/CHML.2_1975_20000_0.1257_0.9433_0.57985.png
                gene_name: CHML
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 91 percent done.
CHN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.041207e-03	ci left: 9.556593e-01	ci right 9.634701e-01	k: 9597	n:10000
KS ci ratio: 1.042345e-01	ci left: 1.174050e-01	ci right 1.304149e-01	k: 1238	n:10000
CHN1   10000 perm   2 sec   (6470 perm/sec)   p_kst 1.238000e-01   p_cons 9.597000e-01   p_joint 1

Joint ci ratio: 6.742984e-02	ci left: 1.396541e-01	ci right 1.494494e-01	k: 2890	n:20000
Cons ci ratio: 5.631482e-03	ci left: 9.576045e-01	ci right 9.630606e-01	k: 19208	n:20000
KS ci ratio: 7.325148e-02	ci left: 1.206431e-01	ci right 1.298661e-01	k: 2504	n:20000
CHN1   20000 perm   4 sec   (5619 perm/sec)   p_kst 1.252000e-01   p_cons 9.604000e-01   p_joint 1.445000e-01

Outputting figure to mutsig2_images.part000000000037/CHN1.2_1432_20000_0.1252_0.9604_0.1445.png
                gene_name: CHN1
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 93 percent done.
CHP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.184518e-03	ci left: 9.801637e-01	ci right 9.853496e-01	k: 9829	n:10000
Cons ci ratio: 1.829259e-02	ci left: 8.135465e-01	ci right 8.286659e-01	k: 8212	n:10000
KS ci ratio: 1.544893e-02	ci left: 8.587584e-01	ci right 8.722279e-01	k: 8656	n:10000
CHP   10000 perm   2 sec   (6643 perm/sec)   p_kst 8.656000e-01   p_cons 8.212000e-01   p_joint 9.829000e-01

Outputting figure to mutsig2_images.part000000000037/CHP.2_616_10000_0.8656_0.8212_0.9829.png
                gene_name: CHP
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 95 percent done.
CHPF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.037421e-02	ci left: 6.152251e-01	ci right 6.343022e-01	k: 6248	n:10000
KS ci ratio: 1.898640e-02	ci left: 8.021712e-01	ci right 8.176478e-01	k: 8100	n:10000
CHPF   10000 perm   2 sec   (5578 perm/sec)   p_kst 8.100000e-01   p_cons 6.248000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000037/CHPF.2_2344_10000_0.81_0.6248_1.png
                gene_name: CHPF
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
CHRDL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.027259e-01	ci left: 1.205332e-01	ci right 1.336849e-01	k: 1270	n:10000
Cons ci ratio: 7.134047e-02	ci left: 2.235583e-01	ci right 2.401981e-01	k: 2318	n:10000
KS ci ratio: 7.114081e-02	ci left: 2.245456e-01	ci right 2.412103e-01	k: 2328	n:10000
CHRDL2   10000 perm   2 sec   (6538 perm/sec)   p_kst 2.328000e-01   p_cons 2.318000e-01   p_joint 1.270000e-01

Joint ci ratio: 6.572483e-02	ci left: 1.460145e-01	ci right 1.559872e-01	k: 3019	n:20000
Cons ci ratio: 5.039632e-02	ci left: 2.263625e-01	ci right 2.381155e-01	k: 4644	n:20000
KS ci ratio: 5.072353e-02	ci left: 2.240831e-01	ci right 2.357955e-01	k: 4598	n:20000
CHRDL2   20000 perm   4 sec   (5681 perm/sec)   p_kst 2.299000e-01   p_cons 2.322000e-01   p_joint 1.509500e-01

Outputting figure to mutsig2_images.part000000000037/CHRDL2.2_1404_20000_0.2299_0.2322_0.15095.png
                gene_name: CHRDL2
               theta_stop: 0.066 
                    nperm: 20000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000037
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 37 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1425>
Subject: Job 8003961: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1425>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000038> was used as the working directory.
Started at Sun Nov 11 17:33:01 2012
Results reported at Sun Nov 11 21:14:48 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000038.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000038.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 38  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000038.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  23850.59 sec.
    Max Memory :      4782 MB
    Max Swap   :      7180 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
38
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 38
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 38: processing genes 3348 - 3438
Calculating significance of each gene.
Using projection method.
3348	CHRNA7	5.654130e-01
3349	CHRNA9	2.814183e-01
3350	CHRNB1	8.564875e-01
3351	CHRNB2	3.405413e-02
3352	CHRNB3	5.140780e-01
3353	CHRNB4	1.366289e-01
3354	CHRND	1
3355	CHRNE	1
3356	CHRNG	3.074378e-01
3357	CHST1	5.064612e-01
3358	CHST10	7.478525e-01
3359	CHST11	4.272892e-01
3360	CHST12	6.506028e-01
3361	CHST13	1
3362	CHST14	1
3363	CHST15	8.578516e-01
3364	CHST2	7.915260e-02
3365	CHST3	3.321509e-01
3366	CHST4	5.348767e-01
3367	CHST5	7.429112e-03
3368	CHST6	4.190446e-02
3369	CHST8	2.394840e-01
3370	CHST9	1.030987e-01
3371	CHSY1	8.074190e-01
3372	CHSY3	4.583571e-01
3373	CHTF18	4.515906e-01
3374	CHTF8	4.356059e-01
3375	CHUK	6.732447e-01
3376	CHURC1	1
3377	CIAO1	1
3378	CIAPIN1	7.070387e-01
3379	CIB1	5.401091e-01
3380	CIB2	1.867650e-01
3381	CIB3	6.173176e-01
3382	CIB4	4.937548e-01
3383	CIC	8.410334e-01
3384	CIDEA	1
3385	CIDEB	1
3386	CIDEC	2.799988e-01
3387	CIITA	8.449282e-01
3388	CILP	1
3389	CILP2	9.932138e-01
3390	CINP	1
3391	CIR1	6.814411e-01
3392	CIRBP	1.075281e-01
3393	CIRH1A	7.517625e-01
3394	CISD1	1
3395	CISD2	1
3396	CISH	1
3397	CIT	9.769209e-01
3398	CITED1	1
3399	CITED2	4.829778e-01
3400	CIZ1	7.425407e-01
3401	CKAP2	1
3402	CKAP2L	5.599328e-01
3403	CKAP4	7.939814e-01
3404	CKAP5	9.647654e-01
3405	CKB	6.436181e-01
3406	CKLF	2.979635e-01
3407	CKM	4.882167e-01
3408	CKMT1A	1
3409	CKMT1B	1
3410	CKMT2	2.065220e-01
3411	CKS1B	1.915798e-01
3412	CKS2	1
3413	CLASP1	6.561593e-01
3414	CLASP2	4.850616e-01
3415	CLC	1
3416	CLCA1	5.302502e-02
3417	CLCA2	2.870742e-01
3418	CLCA4	9.196743e-01
3419	CLCC1	1
3420	CLCF1	1
3421	CLCN1	9.191010e-01
3422	CLCN2	1
3423	CLCN3	5.622882e-01
3424	CLCN4	7.114890e-01
3425	CLCN5	3.786400e-01
3426	CLCN6	8.505426e-01
3427	CLCN7	8.459121e-01
3428	CLCNKA	9.594901e-01
3429	CLCNKB	7.199645e-01
3430	CLDN1	8.622834e-02
3431	CLDN10	4.322476e-02
3432	CLDN11	3.545779e-01
3433	CLDN12	1.960371e-02
3434	CLDN14	1
3435	CLDN15	4.511903e-01
3436	CLDN16	4.925731e-02
3437	CLDN17	5.045881e-01
3438	CLDN18	5.521194e-01
Done

Running MutSig 2:
Scatter job 38: processing genes 3348 - 3438
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CLCA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.840456e-02	ci left: 8.117176e-01	ci right 8.268959e-01	k: 8194	n:10000
Cons ci ratio: 2.260762e-02	ci left: 7.417955e-01	ci right 7.588585e-01	k: 7504	n:10000
KS ci ratio: 3.177040e-02	ci left: 5.938334e-01	ci right 6.131063e-01	k: 6035	n:10000
CLCA1   10000 perm   2 sec   (4650 perm/sec)   p_kst 6.035000e-01   p_cons 7.504000e-01   p_joint 8.194000e-01

Outputting figure to mutsig2_images.part000000000038/CLCA1.7_2801_10000_0.6035_0.7504_0.8194.png
                gene_name: CLCA1
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 2 percent done.
CHST5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.071161e-01	ci left: 1.117389e-01	ci right 1.244845e-01	k: 1180	n:10000
Cons ci ratio: 8.083070e-02	ci left: 1.826474e-01	ci right 1.981334e-01	k: 1903	n:10000
KS ci ratio: 1.295265e-01	ci left: 7.844097e-02	ci right 8.940285e-02	k: 838	n:10000
CHST5   10000 perm   2 sec   (5748 perm/sec)   p_kst 8.380000e-02   p_cons 1.903000e-01   p_joint 1.180000e-01

Joint ci ratio: 9.330090e-02	ci left: 7.730380e-02	ci right 8.491851e-02	k: 1621	n:20000
Cons ci ratio: 5.754901e-02	ci left: 1.828529e-01	ci right 1.937378e-01	k: 3765	n:20000
KS ci ratio: 9.342632e-02	ci left: 7.710809e-02	ci right 8.471428e-02	k: 1617	n:20000
CHST5   20000 perm   4 sec   (5057 perm/sec)   p_kst 8.085000e-02   p_cons 1.882500e-01   p_joint 8.105000e-02

Outputting figure to mutsig2_images.part000000000038/CHST5.6_1240_20000_0.08085_0.18825_0.08105.png
                gene_name: CHST5
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.081 
        ci_ks_bounds_left: 0.077 
       ci_ks_bounds_right: 0.085 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.081 
     ci_joint_bounds_left: 0.077 
    ci_joint_bounds_right: 0.085 

Current progress: 4 percent done.
CILP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.541838e-01	ci left: 9.958933e-03	ci right 1.433217e-02	k: 120	n:10000
Cons ci ratio: 2.039378e-02	ci left: 7.788424e-01	ci right 7.949902e-01	k: 7870	n:10000
KS ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
CILP2   10000 perm   2 sec   (4512 perm/sec)   p_kst 1.000000e-04   p_cons 7.870000e-01   p_joint 1.200000e-02

Joint ci ratio: 3.210197e-01	ci left: 6.213270e-03	ci right 8.633254e-03	k: 147	n:20000
Cons ci ratio: 1.401959e-02	ci left: 7.906504e-01	ci right 8.018633e-01	k: 15926	n:20000
KS ci ratio: 2.771651e+00	ci left: 1.265890e-06	ci right 2.785503e-04	k: 1	n:20000
CILP2   20000 perm   5 sec   (4170 perm/sec)   p_kst 5.000000e-05   p_cons 7.963000e-01   p_joint 7.350000e-03

Joint ci ratio: 3.457367e-01	ci left: 3.530325e-03	ci right 5.034838e-03	k: 127	n:30000
Cons ci ratio: 1.192037e-02	ci left: 7.781237e-01	ci right 7.874882e-01	k: 23485	n:30000
KS ci ratio: 1.959837e+00	ci left: 2.062288e-05	ci right 2.922143e-04	k: 3	n:30000
CILP2   30000 perm   8 sec   (3964 perm/sec)   p_kst 1.000000e-04   p_cons 7.828333e-01   p_joint 4.233333e-03

Joint ci ratio: 3.529063e-01	ci left: 2.533465e-03	ci right 3.640626e-03	k: 122	n:40000
Cons ci ratio: 1.022333e-02	ci left: 7.820735e-01	ci right 7.901349e-01	k: 31445	n:40000
KS ci ratio: 1.752946e+00	ci left: 2.724728e-05	ci right 2.560197e-04	k: 4	n:40000
CILP2   40000 perm   11 sec   (3809 perm/sec)   p_kst 1.000000e-04   p_cons 7.861250e-01   p_joint 3.050000e-03

Joint ci ratio: 3.344457e-01	ci left: 2.282567e-03	ci right 3.216655e-03	k: 136	n:50000
Cons ci ratio: 9.134364e-03	ci left: 7.828615e-01	ci right 7.900652e-01	k: 39324	n:50000
KS ci ratio: 1.087060e+00	ci left: 1.240175e-04	ci right 4.191941e-04	k: 12	n:50000
CILP2   50000 perm   14 sec   (3699 perm/sec)   p_kst 2.400000e-04   p_cons 7.864800e-01   p_joint 2.720000e-03

Joint ci ratio: 3.218217e-01	ci left: 2.070336e-03	ci right 2.878991e-03	k: 147	n:60000
Cons ci ratio: 8.331372e-03	ci left: 7.834672e-01	ci right 7.900384e-01	k: 47206	n:60000
KS ci ratio: 1.087086e+00	ci left: 1.033471e-04	ci right 3.493337e-04	k: 12	n:60000
CILP2   60000 perm   17 sec   (3608 perm/sec)   p_kst 2.000000e-04   p_cons 7.867667e-01   p_joint 2.450000e-03

Joint ci ratio: 3.066782e-01	ci left: 1.971952e-03	ci right 2.698858e-03	k: 162	n:70000
Cons ci ratio: 7.717179e-03	ci left: 7.835459e-01	ci right 7.896303e-01	k: 55062	n:70000
KS ci ratio: 8.552797e-01	ci left: 1.745302e-04	ci right 4.412282e-04	k: 20	n:70000
CILP2   70000 perm   20 sec   (3530 perm/sec)   p_kst 2.857143e-04   p_cons 7.866000e-01   p_joint 2.314286e-03

Joint ci ratio: 3.383506e-01	ci left: 1.392156e-03	ci right 1.969947e-03	k: 133	n:80000
Cons ci ratio: 7.225207e-03	ci left: 7.834429e-01	ci right 7.891364e-01	k: 62904	n:80000
KS ci ratio: 8.172539e-01	ci left: 1.723488e-04	ci right 4.163239e-04	k: 22	n:80000
CILP2   80000 perm   23 sec   (3464 perm/sec)   p_kst 2.750000e-04   p_cons 7.863000e-01   p_joint 1.662500e-03

Joint ci ratio: 3.115829e-01	ci left: 1.482432e-03	ci right 2.039359e-03	k: 157	n:90000
Cons ci ratio: 6.819195e-03	ci left: 7.832500e-01	ci right 7.886205e-01	k: 70735	n:90000
KS ci ratio: 7.686599e-01	ci left: 1.797709e-04	ci right 4.100277e-04	k: 25	n:90000
CILP2   90000 perm   26 sec   (3418 perm/sec)   p_kst 2.777778e-04   p_cons 7.859444e-01   p_joint 1.744444e-03

Joint ci ratio: 1.924909e-01	ci left: 3.732432e-03	ci right 4.536749e-03	k: 412	n:100000
Cons ci ratio: 6.466841e-03	ci left: 7.835151e-01	ci right 7.886083e-01	k: 78607	n:100000
KS ci ratio: 7.039401e-01	ci left: 2.024176e-04	ci right 4.282412e-04	k: 30	n:100000
CILP2   100000 perm   30 sec   (3379 perm/sec)   p_kst 3.000000e-04   p_cons 7.860700e-01   p_joint 4.120000e-03

Joint ci ratio: 1.900039e-01	ci left: 3.488289e-03	ci right 4.229157e-03	k: 423	n:110000
Cons ci ratio: 6.153839e-03	ci left: 7.842945e-01	ci right 7.891449e-01	k: 86540	n:110000
KS ci ratio: 6.928607e-01	ci left: 1.914896e-04	ci right 3.999948e-04	k: 31	n:110000
CILP2   110000 perm   33 sec   (3333 perm/sec)   p_kst 2.818182e-04   p_cons 7.867273e-01   p_joint 3.845455e-03

Joint ci ratio: 1.828189e-01	ci left: 3.467709e-03	ci right 4.173270e-03	k: 457	n:120000
Cons ci ratio: 5.894232e-03	ci left: 7.842625e-01	ci right 7.889070e-01	k: 94391	n:120000
KS ci ratio: 6.625015e-01	ci left: 1.962243e-04	ci right 3.959076e-04	k: 34	n:120000
CILP2   120000 perm   36 sec   (3291 perm/sec)   p_kst 2.833333e-04   p_cons 7.865917e-01   p_joint 3.808333e-03

Joint ci ratio: 1.802959e-01	ci left: 3.296391e-03	ci right 3.956825e-03	k: 470	n:130000
Cons ci ratio: 5.660518e-03	ci left: 7.845016e-01	ci right 7.889625e-01	k: 102276	n:130000
KS ci ratio: 6.532404e-01	ci left: 1.875360e-04	ci right 3.744151e-04	k: 35	n:130000
CILP2   130000 perm   40 sec   (3246 perm/sec)   p_kst 2.692308e-04   p_cons 7.867385e-01   p_joint 3.615385e-03

Joint ci ratio: 1.769580e-01	ci left: 3.183740e-03	ci right 3.808531e-03	k: 488	n:140000
Cons ci ratio: 5.454191e-03	ci left: 7.846092e-01	ci right 7.889074e-01	k: 110147	n:140000
KS ci ratio: 6.276127e-01	ci left: 1.920859e-04	ci right 3.725381e-04	k: 38	n:140000
CILP2   140000 perm   44 sec   (3203 perm/sec)   p_kst 2.714286e-04   p_cons 7.867643e-01   p_joint 3.485714e-03

Joint ci ratio: 1.748394e-01	ci left: 3.047950e-03	ci right 3.638172e-03	k: 500	n:150000
Cons ci ratio: 5.265547e-03	ci left: 7.849192e-01	ci right 7.890697e-01	k: 118050	n:150000
KS ci ratio: 6.047824e-01	ci left: 1.961556e-04	ci right 3.707895e-04	k: 41	n:150000
CILP2   150000 perm   47 sec   (3162 perm/sec)   p_kst 2.733333e-04   p_cons 7.870000e-01   p_joint 3.333333e-03

Joint ci ratio: 1.736450e-01	ci left: 2.899275e-03	ci right 3.456469e-03	k: 507	n:160000
Cons ci ratio: 5.099199e-03	ci left: 7.849291e-01	ci right 7.889480e-01	k: 125911	n:160000
KS ci ratio: 5.908791e-01	ci left: 1.945023e-04	ci right 3.619876e-04	k: 43	n:160000
CILP2   160000 perm   51 sec   (3125 perm/sec)   p_kst 2.687500e-04   p_cons 7.869438e-01   p_joint 3.168750e-03

Joint ci ratio: 1.885797e-01	ci left: 2.296218e-03	ci right 2.779820e-03	k: 430	n:170000
Cons ci ratio: 4.941172e-03	ci left: 7.853823e-01	ci right 7.892785e-01	k: 133847	n:170000
KS ci ratio: 5.657217e-01	ci left: 2.031470e-04	ci right 3.676305e-04	k: 47	n:170000
CILP2   170000 perm   55 sec   (3087 perm/sec)   p_kst 2.764706e-04   p_cons 7.873353e-01   p_joint 2.529412e-03

Joint ci ratio: 1.892544e-01	ci left: 2.152757e-03	ci right 2.607952e-03	k: 427	n:180000
Cons ci ratio: 4.806126e-03	ci left: 7.851458e-01	ci right 7.889339e-01	k: 141668	n:180000
KS ci ratio: 5.435262e-01	ci left: 2.109673e-04	ci right 3.725144e-04	k: 51	n:180000
CILP2   180000 perm   59 sec   (3043 perm/sec)   p_kst 2.833333e-04   p_cons 7.870444e-01   p_joint 2.372222e-03

Joint ci ratio: 2.075643e-01	ci left: 1.679247e-03	ci right 2.073042e-03	k: 355	n:190000
Cons ci ratio: 4.677532e-03	ci left: 7.852259e-01	ci right 7.889127e-01	k: 149544	n:190000
KS ci ratio: 5.102599e-01	ci left: 2.318070e-04	ci right 3.946058e-04	k: 58	n:190000
CILP2   190000 perm   63 sec   (3004 perm/sec)   p_kst 3.052632e-04   p_cons 7.870737e-01   p_joint 1.868421e-03

Joint ci ratio: 2.130391e-01	ci left: 1.510009e-03	ci right 1.874677e-03	k: 337	n:200000
Cons ci ratio: 4.559416e-03	ci left: 7.852491e-01	ci right 7.888425e-01	k: 157410	n:200000
KS ci ratio: 5.102640e-01	ci left: 2.202163e-04	ci right 3.748763e-04	k: 58	n:200000
CILP2   200000 perm   67 sec   (2966 perm/sec)   p_kst 2.900000e-04   p_cons 7.870500e-01   p_joint 1.685000e-03

Joint ci ratio: 1.993388e-01	ci left: 1.654898e-03	ci right 2.025735e-03	k: 385	n:210000
Cons ci ratio: 4.462710e-03	ci left: 7.842969e-01	ci right 7.878095e-01	k: 165072	n:210000
KS ci ratio: 5.018305e-01	ci left: 2.180370e-04	ci right 3.677558e-04	k: 60	n:210000
CILP2   210000 perm   72 sec   (2928 perm/sec)   p_kst 2.857143e-04   p_cons 7.860571e-01   p_joint 1.833333e-03

Joint ci ratio: 1.978130e-01	ci left: 1.605588e-03	ci right 1.962289e-03	k: 391	n:220000
Cons ci ratio: 4.366679e-03	ci left: 7.838289e-01	ci right 7.872636e-01	k: 172821	n:220000
KS ci ratio: 4.824452e-01	ci left: 2.280328e-04	ci right 3.765658e-04	k: 65	n:220000
CILP2   220000 perm   76 sec   (2895 perm/sec)   p_kst 2.954545e-04   p_cons 7.855500e-01   p_joint 1.777273e-03

Joint ci ratio: 1.975684e-01	ci left: 1.539908e-03	ci right 1.881542e-03	k: 392	n:230000
Cons ci ratio: 4.269566e-03	ci left: 7.839562e-01	ci right 7.873148e-01	k: 180697	n:230000
KS ci ratio: 4.752985e-01	ci left: 2.257638e-04	ci right 3.699317e-04	k: 67	n:230000
CILP2   230000 perm   80 sec   (2862 perm/sec)   p_kst 2.913043e-04   p_cons 7.856391e-01   p_joint 1.704348e-03

Joint ci ratio: 1.913369e-01	ci left: 1.578808e-03	ci right 1.916741e-03	k: 418	n:240000
Cons ci ratio: 4.176950e-03	ci left: 7.842116e-01	ci right 7.874982e-01	k: 188606	n:240000
KS ci ratio: 4.525709e-01	ci left: 2.421155e-04	ci right 3.870690e-04	k: 74	n:240000
CILP2   240000 perm   85 sec   (2827 perm/sec)   p_kst 3.083333e-04   p_cons 7.858583e-01   p_joint 1.741667e-03

Joint ci ratio: 1.871403e-01	ci left: 1.588056e-03	ci right 1.919666e-03	k: 437	n:250000
Cons ci ratio: 4.091273e-03	ci left: 7.843509e-01	ci right 7.875704e-01	k: 196491	n:250000
KS ci ratio: 4.437825e-01	ci left: 2.430762e-04	ci right 3.849323e-04	k: 77	n:250000
CILP2   250000 perm   89 sec   (2793 perm/sec)   p_kst 3.080000e-04   p_cons 7.859640e-01   p_joint 1.748000e-03

Joint ci ratio: 1.844251e-01	ci left: 1.574651e-03	ci right 1.898157e-03	k: 450	n:260000
Cons ci ratio: 4.013871e-03	ci left: 7.842102e-01	ci right 7.873680e-01	k: 204306	n:260000
KS ci ratio: 4.354869e-01	ci left: 2.439882e-04	ci right 3.829353e-04	k: 80	n:260000
CILP2   260000 perm   94 sec   (2760 perm/sec)   p_kst 3.076923e-04   p_cons 7.857923e-01   p_joint 1.730769e-03

Joint ci ratio: 1.927427e-01	ci left: 1.382217e-03	ci right 1.680498e-03	k: 412	n:270000
Cons ci ratio: 3.939008e-03	ci left: 7.842253e-01	ci right 7.873241e-01	k: 212160	n:270000
KS ci ratio: 4.276397e-01	ci left: 2.448555e-04	ci right 3.810637e-04	k: 83	n:270000
CILP2   270000 perm   99 sec   (2727 perm/sec)   p_kst 3.074074e-04   p_cons 7.857778e-01   p_joint 1.525926e-03

Joint ci ratio: 1.888936e-01	ci left: 1.390667e-03	ci right 1.684091e-03	k: 429	n:280000
Cons ci ratio: 3.866584e-03	ci left: 7.843795e-01	ci right 7.874217e-01	k: 220053	n:280000
KS ci ratio: 4.226388e-01	ci left: 2.424890e-04	ci right 3.753573e-04	k: 85	n:280000
CILP2   280000 perm   104 sec   (2696 perm/sec)   p_kst 3.035714e-04   p_cons 7.859036e-01   p_joint 1.532143e-03

Joint ci ratio: 1.909101e-01	ci left: 1.313149e-03	ci right 1.593518e-03	k: 420	n:290000
Cons ci ratio: 3.800153e-03	ci left: 7.843333e-01	ci right 7.873230e-01	k: 227891	n:290000
KS ci ratio: 4.178093e-01	ci left: 2.402945e-04	ci right 3.700359e-04	k: 87	n:290000
CILP2   290000 perm   109 sec   (2667 perm/sec)   p_kst 3.000000e-04   p_cons 7.858310e-01   p_joint 1.448276e-03

Joint ci ratio: 1.920602e-01	ci left: 1.253506e-03	ci right 1.522941e-03	k: 415	n:300000
Cons ci ratio: 3.734367e-03	ci left: 7.845313e-01	ci right 7.874698e-01	k: 235801	n:300000
KS ci ratio: 4.086249e-01	ci left: 2.442319e-04	ci right 3.724132e-04	k: 91	n:300000
CILP2   300000 perm   114 sec   (2638 perm/sec)   p_kst 3.033333e-04   p_cons 7.860033e-01   p_joint 1.383333e-03

Joint ci ratio: 2.017671e-01	ci left: 1.093453e-03	ci right 1.341829e-03	k: 376	n:310000
Cons ci ratio: 3.673467e-03	ci left: 7.845714e-01	ci right 7.874620e-01	k: 243666	n:310000
KS ci ratio: 4.000207e-01	ci left: 2.479445e-04	ci right 3.746084e-04	k: 95	n:310000
CILP2   310000 perm   119 sec   (2610 perm/sec)   p_kst 3.064516e-04   p_cons 7.860194e-01   p_joint 1.212903e-03

Joint ci ratio: 1.981215e-01	ci left: 1.100843e-03	ci right 1.345833e-03	k: 390	n:320000
Cons ci ratio: 3.616157e-03	ci left: 7.845435e-01	ci right 7.873888e-01	k: 251510	n:320000
KS ci ratio: 3.959185e-01	ci left: 2.458206e-04	ci right 3.697745e-04	k: 97	n:320000
CILP2   320000 perm   124 sec   (2581 perm/sec)   p_kst 3.031250e-04   p_cons 7.859687e-01   p_joint 1.218750e-03

Joint ci ratio: 1.961265e-01	ci left: 1.090529e-03	ci right 1.330489e-03	k: 398	n:330000
Cons ci ratio: 3.558369e-03	ci left: 7.848093e-01	ci right 7.876099e-01	k: 259450	n:330000
KS ci ratio: 3.939151e-01	ci left: 2.411007e-04	ci right 3.618992e-04	k: 98	n:330000
CILP2   330000 perm   129 sec   (2553 perm/sec)   p_kst 2.969697e-04   p_cons 7.862121e-01   p_joint 1.206061e-03

Joint ci ratio: 1.956397e-01	ci left: 1.064047e-03	ci right 1.297529e-03	k: 400	n:340000
Cons ci ratio: 3.505684e-03	ci left: 7.848268e-01	ci right 7.875859e-01	k: 267311	n:340000
KS ci ratio: 3.880790e-01	ci left: 2.419656e-04	ci right 3.609419e-04	k: 101	n:340000
CILP2   340000 perm   135 sec   (2525 perm/sec)   p_kst 2.970588e-04   p_cons 7.862088e-01   p_joint 1.176471e-03

Joint ci ratio: 1.968757e-01	ci left: 1.020060e-03	ci right 1.245473e-03	k: 395	n:350000
Cons ci ratio: 3.457827e-03	ci left: 7.845945e-01	ci right 7.873150e-01	k: 275085	n:350000
KS ci ratio: 3.771434e-01	ci left: 2.505468e-04	ci right 3.694127e-04	k: 107	n:350000
CILP2   350000 perm   140 sec   (2498 perm/sec)   p_kst 3.057143e-04   p_cons 7.859571e-01   p_joint 1.128571e-03

Joint ci ratio: 1.428934e-01	ci left: 1.937021e-03	ci right 2.237750e-03	k: 750	n:360000
Cons ci ratio: 3.408888e-03	ci left: 7.846705e-01	ci right 7.873527e-01	k: 282965	n:360000
KS ci ratio: 3.720121e-01	ci left: 2.511360e-04	ci right 3.682655e-04	k: 110	n:360000
CILP2   360000 perm   146 sec   (2472 perm/sec)   p_kst 3.055556e-04   p_cons 7.860139e-01   p_joint 2.083333e-03

Joint ci ratio: 1.439577e-01	ci left: 1.856001e-03	ci right 2.146482e-03	k: 739	n:370000
Cons ci ratio: 3.362213e-03	ci left: 7.847183e-01	ci right 7.873637e-01	k: 290836	n:370000
KS ci ratio: 3.687058e-01	ci left: 2.492508e-04	ci right 3.642188e-04	k: 112	n:370000
CILP2   370000 perm   151 sec   (2447 perm/sec)   p_kst 3.027027e-04   p_cons 7.860432e-01   p_joint 1.997297e-03

Joint ci ratio: 1.418640e-01	ci left: 1.862984e-03	ci right 2.149958e-03	k: 761	n:380000
Cons ci ratio: 3.317093e-03	ci left: 7.847954e-01	ci right 7.874055e-01	k: 298719	n:380000
KS ci ratio: 3.563064e-01	ci left: 2.618276e-04	ci right 3.775951e-04	k: 120	n:380000
CILP2   380000 perm   157 sec   (2420 perm/sec)   p_kst 3.157895e-04   p_cons 7.861026e-01   p_joint 2.002632e-03

Joint ci ratio: 1.398590e-01	ci left: 1.869638e-03	ci right 2.153227e-03	k: 783	n:390000
Cons ci ratio: 3.274889e-03	ci left: 7.847505e-01	ci right 7.873273e-01	k: 306556	n:390000
KS ci ratio: 3.519700e-01	ci left: 2.621221e-04	ci right 3.762871e-04	k: 123	n:390000
CILP2   390000 perm   163 sec   (2394 perm/sec)   p_kst 3.153846e-04   p_cons 7.860410e-01   p_joint 2.007692e-03

Joint ci ratio: 1.389773e-01	ci left: 1.847023e-03	ci right 2.125270e-03	k: 793	n:400000
Cons ci ratio: 3.234737e-03	ci left: 7.846581e-01	ci right 7.872028e-01	k: 314373	n:400000
KS ci ratio: 3.477881e-01	ci left: 2.624100e-04	ci right 3.750364e-04	k: 126	n:400000
CILP2   400000 perm   169 sec   (2370 perm/sec)   p_kst 3.150000e-04   p_cons 7.859325e-01   p_joint 1.982500e-03

Joint ci ratio: 1.378545e-01	ci left: 1.832582e-03	ci right 2.106240e-03	k: 806	n:410000
Cons ci ratio: 3.194868e-03	ci left: 7.846925e-01	ci right 7.872059e-01	k: 322240	n:410000
KS ci ratio: 3.450820e-01	ci left: 2.604633e-04	ci right 3.711901e-04	k: 128	n:410000
CILP2   410000 perm   175 sec   (2345 perm/sec)   p_kst 3.121951e-04   p_cons 7.859512e-01   p_joint 1.965854e-03

Joint ci ratio: 1.120200e-01	ci left: 2.744249e-03	ci right 3.072192e-03	k: 1220	n:420000
Cons ci ratio: 3.156438e-03	ci left: 7.847255e-01	ci right 7.872087e-01	k: 330107	n:420000
KS ci ratio: 3.424382e-01	ci left: 2.586126e-04	ci right 3.675237e-04	k: 130	n:420000
CILP2   420000 perm   181 sec   (2317 perm/sec)   p_kst 3.095238e-04   p_cons 7.859690e-01   p_joint 2.904762e-03

Joint ci ratio: 1.105799e-01	ci left: 2.752777e-03	ci right 3.077234e-03	k: 1252	n:430000
Cons ci ratio: 3.119081e-03	ci left: 7.847874e-01	ci right 7.872413e-01	k: 337987	n:430000
KS ci ratio: 3.373265e-01	ci left: 2.611069e-04	ci right 3.690698e-04	k: 134	n:430000
CILP2   430000 perm   188 sec   (2289 perm/sec)   p_kst 3.116279e-04   p_cons 7.860163e-01   p_joint 2.911628e-03

Joint ci ratio: 1.090240e-01	ci left: 2.769787e-03	ci right 3.091360e-03	k: 1288	n:440000
Cons ci ratio: 3.082166e-03	ci left: 7.849400e-01	ci right 7.873653e-01	k: 345908	n:440000
KS ci ratio: 3.336398e-01	ci left: 2.614165e-04	ci right 3.680723e-04	k: 137	n:440000
CILP2   440000 perm   195 sec   (2261 perm/sec)   p_kst 3.113636e-04   p_cons 7.861545e-01   p_joint 2.927273e-03

Joint ci ratio: 1.108536e-01	ci left: 2.617457e-03	ci right 2.926778e-03	k: 1246	n:450000
Cons ci ratio: 3.047798e-03	ci left: 7.849457e-01	ci right 7.873439e-01	k: 353766	n:450000
KS ci ratio: 3.266140e-01	ci left: 2.678359e-04	ci right 3.743270e-04	k: 143	n:450000
CILP2   450000 perm   201 sec   (2238 perm/sec)   p_kst 3.177778e-04   p_cons 7.861467e-01   p_joint 2.768889e-03

Joint ci ratio: 1.139206e-01	ci left: 2.421096e-03	ci right 2.715660e-03	k: 1180	n:460000
Cons ci ratio: 3.014906e-03	ci left: 7.849121e-01	ci right 7.872843e-01	k: 361606	n:460000
KS ci ratio: 3.254866e-01	ci left: 2.640093e-04	ci right 3.685409e-04	k: 144	n:460000
CILP2   460000 perm   208 sec   (2216 perm/sec)   p_kst 3.130435e-04   p_cons 7.861000e-01   p_joint 2.565217e-03

Joint ci ratio: 1.123608e-01	ci left: 2.437811e-03	ci right 2.730077e-03	k: 1213	n:470000
Cons ci ratio: 2.982981e-03	ci left: 7.848886e-01	ci right 7.872355e-01	k: 369450	n:470000
KS ci ratio: 3.189535e-01	ci left: 2.701258e-04	ci right 3.744942e-04	k: 150	n:470000
CILP2   470000 perm   214 sec   (2193 perm/sec)   p_kst 3.191489e-04   p_cons 7.860638e-01   p_joint 2.580851e-03

Joint ci ratio: 1.114019e-01	ci left: 2.429548e-03	ci right 2.718175e-03	k: 1234	n:480000
Cons ci ratio: 2.951811e-03	ci left: 7.848934e-01	ci right 7.872157e-01	k: 377307	n:480000
KS ci ratio: 3.179033e-01	ci left: 2.664150e-04	ci right 3.689417e-04	k: 151	n:480000
CILP2   480000 perm   221 sec   (2171 perm/sec)   p_kst 3.145833e-04   p_cons 7.860563e-01   p_joint 2.570833e-03

Joint ci ratio: 1.127397e-01	ci left: 2.322433e-03	ci right 2.601869e-03	k: 1205	n:490000
Cons ci ratio: 2.921475e-03	ci left: 7.849123e-01	ci right 7.872108e-01	k: 385171	n:490000
KS ci ratio: 3.148119e-01	ci left: 2.666143e-04	ci right 3.680192e-04	k: 154	n:490000
CILP2   490000 perm   228 sec   (2149 perm/sec)   p_kst 3.142857e-04   p_cons 7.860633e-01   p_joint 2.459184e-03

Joint ci ratio: 1.116345e-01	ci left: 2.322638e-03	ci right 2.599178e-03	k: 1229	n:500000
Cons ci ratio: 2.892123e-03	ci left: 7.849227e-01	ci right 7.871980e-01	k: 393031	n:500000
KS ci ratio: 3.108265e-01	ci left: 2.686541e-04	ci right 3.692848e-04	k: 158	n:500000
CILP2   500000 perm   235 sec   (2127 perm/sec)   p_kst 3.160000e-04   p_cons 7.860620e-01   p_joint 2.458000e-03

Joint ci ratio: 1.135502e-01	ci left: 2.198960e-03	ci right 2.465568e-03	k: 1188	n:510000
Cons ci ratio: 2.863372e-03	ci left: 7.849641e-01	ci right 7.872169e-01	k: 400907	n:510000
KS ci ratio: 3.098543e-01	ci left: 2.651944e-04	ci right 3.641570e-04	k: 159	n:510000
CILP2   510000 perm   242 sec   (2106 perm/sec)   p_kst 3.117647e-04   p_cons 7.860922e-01   p_joint 2.329412e-03

Joint ci ratio: 1.123748e-01	ci left: 2.203391e-03	ci right 2.467588e-03	k: 1213	n:520000
Cons ci ratio: 2.834618e-03	ci left: 7.851043e-01	ci right 7.873348e-01	k: 408835	n:520000
KS ci ratio: 3.051229e-01	ci left: 2.689682e-04	ci right 3.675088e-04	k: 164	n:520000
CILP2   520000 perm   250 sec   (2083 perm/sec)   p_kst 3.153846e-04   p_cons 7.862212e-01   p_joint 2.332692e-03

Joint ci ratio: 1.116878e-01	ci left: 2.189325e-03	ci right 2.450125e-03	k: 1228	n:530000
Cons ci ratio: 2.808320e-03	ci left: 7.850465e-01	ci right 7.872561e-01	k: 416661	n:530000
KS ci ratio: 3.051238e-01	ci left: 2.638932e-04	ci right 3.605749e-04	k: 164	n:530000
CILP2   530000 perm   257 sec   (2063 perm/sec)   p_kst 3.094340e-04   p_cons 7.861528e-01   p_joint 2.316981e-03

Joint ci ratio: 1.107458e-01	ci left: 2.186589e-03	ci right 2.444723e-03	k: 1249	n:540000
Cons ci ratio: 2.781774e-03	ci left: 7.851077e-01	ci right 7.872966e-01	k: 424550	n:540000
KS ci ratio: 3.032915e-01	ci left: 2.624273e-04	ci right 3.578831e-04	k: 166	n:540000
CILP2   540000 perm   265 sec   (2041 perm/sec)   p_kst 3.074074e-04   p_cons 7.862037e-01   p_joint 2.312963e-03

Joint ci ratio: 1.088868e-01	ci left: 2.222870e-03	ci right 2.480599e-03	k: 1292	n:550000
Cons ci ratio: 2.756847e-03	ci left: 7.850594e-01	ci right 7.872285e-01	k: 432380	n:550000
KS ci ratio: 2.954336e-01	ci left: 2.727911e-04	ci right 3.689646e-04	k: 175	n:550000
CILP2   550000 perm   272 sec   (2021 perm/sec)   p_kst 3.181818e-04   p_cons 7.861455e-01   p_joint 2.349091e-03

Joint ci ratio: 1.104409e-01	ci left: 2.120647e-03	ci right 2.370262e-03	k: 1256	n:560000
Cons ci ratio: 2.731083e-03	ci left: 7.851972e-01	ci right 7.873463e-01	k: 440313	n:560000
KS ci ratio: 2.945984e-01	ci left: 2.695734e-04	ci right 3.642935e-04	k: 176	n:560000
CILP2   560000 perm   280 sec   (2001 perm/sec)   p_kst 3.142857e-04   p_cons 7.862732e-01   p_joint 2.242857e-03

Joint ci ratio: 1.521515e-01	ci left: 1.074651e-03	ci right 1.253288e-03	k: 662	n:570000
Cons ci ratio: 2.706833e-03	ci left: 7.852300e-01	ci right 7.873601e-01	k: 448189	n:570000
KS ci ratio: 3.023897e-01	ci left: 2.502362e-04	ci right 3.409349e-04	k: 167	n:570000
CILP2   570000 perm   288 sec   (1981 perm/sec)   p_kst 2.929825e-04   p_cons 7.862965e-01   p_joint 1.161404e-03

Joint ci ratio: 1.507929e-01	ci left: 1.076028e-03	ci right 1.253153e-03	k: 674	n:580000
Cons ci ratio: 2.683575e-03	ci left: 7.852169e-01	ci right 7.873286e-01	k: 456039	n:580000
KS ci ratio: 2.979874e-01	ci left: 2.538934e-04	ci right 3.443245e-04	k: 172	n:580000
CILP2   580000 perm   296 sec   (1962 perm/sec)   p_kst 2.965517e-04   p_cons 7.862741e-01   p_joint 1.162069e-03

Joint ci ratio: 1.511310e-01	ci left: 1.052897e-03	ci right 1.226638e-03	k: 671	n:590000
Cons ci ratio: 2.660008e-03	ci left: 7.853180e-01	ci right 7.874114e-01	k: 463956	n:590000
KS ci ratio: 2.971304e-01	ci left: 2.511585e-04	ci right 3.403097e-04	k: 173	n:590000
CILP2   590000 perm   304 sec   (1944 perm/sec)   p_kst 2.932203e-04   p_cons 7.863661e-01   p_joint 1.137288e-03

Joint ci ratio: 1.502398e-01	ci left: 1.048179e-03	ci right 1.220029e-03	k: 679	n:600000
Cons ci ratio: 2.637848e-03	ci left: 7.853140e-01	ci right 7.873899e-01	k: 471812	n:600000
KS ci ratio: 2.962807e-01	ci left: 2.485151e-04	ci right 3.364283e-04	k: 174	n:600000
CILP2   600000 perm   312 sec   (1926 perm/sec)   p_kst 2.900000e-04   p_cons 7.863533e-01   p_joint 1.131667e-03

Joint ci ratio: 1.487164e-01	ci left: 1.053088e-03	ci right 1.223837e-03	k: 693	n:610000
Cons ci ratio: 2.615314e-03	ci left: 7.854284e-01	ci right 7.874869e-01	k: 479740	n:610000
KS ci ratio: 2.946023e-01	ci left: 2.474768e-04	ci right 3.344341e-04	k: 176	n:610000
CILP2   610000 perm   320 sec   (1908 perm/sec)   p_kst 2.885246e-04   p_cons 7.864590e-01   p_joint 1.136066e-03

Joint ci ratio: 1.474470e-01	ci left: 1.054741e-03	ci right 1.224169e-03	k: 705	n:620000
Cons ci ratio: 2.594057e-03	ci left: 7.854472e-01	ci right 7.874889e-01	k: 487611	n:620000
KS ci ratio: 2.889431e-01	ci left: 2.539495e-04	ci right 3.411540e-04	k: 183	n:620000
CILP2   620000 perm   328 sec   (1891 perm/sec)   p_kst 2.951613e-04   p_cons 7.864694e-01   p_joint 1.137097e-03

Joint ci ratio: 1.119368e-01	ci left: 1.834080e-03	ci right 2.053080e-03	k: 1223	n:630000
Cons ci ratio: 2.573797e-03	ci left: 7.854017e-01	ci right 7.874274e-01	k: 495442	n:630000
KS ci ratio: 2.858525e-01	ci left: 2.558102e-04	ci right 3.425444e-04	k: 187	n:630000
CILP2   630000 perm   336 sec   (1874 perm/sec)   p_kst 2.968254e-04   p_cons 7.864159e-01   p_joint 1.941270e-03

Joint ci ratio: 1.108548e-01	ci left: 1.841878e-03	ci right 2.059545e-03	k: 1247	n:640000
Cons ci ratio: 2.553362e-03	ci left: 7.854423e-01	ci right 7.874519e-01	k: 503327	n:640000
KS ci ratio: 2.821250e-01	ci left: 2.590694e-04	ci right 3.455595e-04	k: 192	n:640000
CILP2   640000 perm   345 sec   (1857 perm/sec)   p_kst 3.000000e-04   p_cons 7.864484e-01   p_joint 1.948438e-03

Joint ci ratio: 1.100205e-01	ci left: 1.841965e-03	ci right 2.057897e-03	k: 1266	n:650000
Cons ci ratio: 2.532885e-03	ci left: 7.855511e-01	ci right 7.875448e-01	k: 511257	n:650000
KS ci ratio: 2.799576e-01	ci left: 2.593738e-04	ci right 3.451830e-04	k: 195	n:650000
CILP2   650000 perm   353 sec   (1841 perm/sec)   p_kst 3.000000e-04   p_cons 7.865492e-01   p_joint 1.947692e-03

Joint ci ratio: 1.089082e-01	ci left: 1.852372e-03	ci right 2.067189e-03	k: 1292	n:660000
Cons ci ratio: 2.513436e-03	ci left: 7.855837e-01	ci right 7.875622e-01	k: 519139	n:660000
KS ci ratio: 2.785403e-01	ci left: 2.582620e-04	ci right 3.431950e-04	k: 197	n:660000
CILP2   660000 perm   361 sec   (1826 perm/sec)   p_kst 2.984848e-04   p_cons 7.865742e-01   p_joint 1.957576e-03

Joint ci ratio: 1.100237e-01	ci left: 1.786978e-03	ci right 1.996471e-03	k: 1266	n:670000
Cons ci ratio: 2.495692e-03	ci left: 7.854451e-01	ci right 7.874092e-01	k: 526907	n:670000
KS ci ratio: 2.771443e-01	ci left: 2.571845e-04	ci right 3.412652e-04	k: 199	n:670000
CILP2   670000 perm   370 sec   (1811 perm/sec)   p_kst 2.970149e-04   p_cons 7.864284e-01   p_joint 1.889552e-03

Joint ci ratio: 1.094641e-01	ci left: 1.779291e-03	ci right 1.986754e-03	k: 1279	n:680000
Cons ci ratio: 2.477081e-03	ci left: 7.854784e-01	ci right 7.874280e-01	k: 534789	n:680000
KS ci ratio: 2.757691e-01	ci left: 2.561396e-04	ci right 3.393912e-04	k: 201	n:680000
CILP2   680000 perm   379 sec   (1796 perm/sec)   p_kst 2.955882e-04   p_cons 7.864544e-01   p_joint 1.880882e-03

Joint ci ratio: 1.088707e-01	ci left: 1.773240e-03	ci right 1.978804e-03	k: 1293	n:690000
Cons ci ratio: 2.458276e-03	ci left: 7.855936e-01	ci right 7.875286e-01	k: 542728	n:690000
KS ci ratio: 2.737438e-01	ci left: 2.564758e-04	ci right 3.391191e-04	k: 204	n:690000
CILP2   690000 perm   388 sec   (1779 perm/sec)   p_kst 2.956522e-04   p_cons 7.865623e-01   p_joint 1.873913e-03

Joint ci ratio: 1.081214e-01	ci left: 1.772925e-03	ci right 1.976947e-03	k: 1311	n:700000
Cons ci ratio: 2.440110e-03	ci left: 7.856755e-01	ci right 7.875964e-01	k: 550646	n:700000
KS ci ratio: 2.730790e-01	ci left: 2.541425e-04	ci right 3.358008e-04	k: 205	n:700000
CILP2   700000 perm   397 sec   (1764 perm/sec)   p_kst 2.928571e-04   p_cons 7.866371e-01   p_joint 1.872857e-03

Joint ci ratio: 1.071454e-01	ci left: 1.780847e-03	ci right 1.983815e-03	k: 1335	n:710000
Cons ci ratio: 2.423164e-03	ci left: 7.856409e-01	ci right 7.875483e-01	k: 558483	n:710000
KS ci ratio: 2.711120e-01	ci left: 2.545001e-04	ci right 3.355841e-04	k: 208	n:710000
CILP2   710000 perm   406 sec   (1750 perm/sec)   p_kst 2.929577e-04   p_cons 7.865958e-01   p_joint 1.880282e-03

Joint ci ratio: 1.085811e-01	ci left: 1.708810e-03	ci right 1.906344e-03	k: 1300	n:720000
Cons ci ratio: 2.406486e-03	ci left: 7.856184e-01	ci right 7.875126e-01	k: 566328	n:720000
KS ci ratio: 2.698242e-01	ci left: 2.535548e-04	ci right 3.338890e-04	k: 210	n:720000
CILP2   720000 perm   415 sec   (1736 perm/sec)   p_kst 2.916667e-04   p_cons 7.865667e-01   p_joint 1.805556e-03

Joint ci ratio: 1.083325e-01	ci left: 1.693397e-03	ci right 1.888673e-03	k: 1306	n:730000
Cons ci ratio: 2.390557e-03	ci left: 7.855390e-01	ci right 7.874204e-01	k: 574131	n:730000
KS ci ratio: 2.679262e-01	ci left: 2.539140e-04	ci right 3.337011e-04	k: 213	n:730000
CILP2   730000 perm   424 sec   (1722 perm/sec)   p_kst 2.917808e-04   p_cons 7.864808e-01   p_joint 1.789041e-03

Joint ci ratio: 1.125067e-01	ci left: 1.545672e-03	ci right 1.731237e-03	k: 1211	n:740000
Cons ci ratio: 2.374787e-03	ci left: 7.854834e-01	ci right 7.873522e-01	k: 581950	n:740000
KS ci ratio: 2.666831e-01	ci left: 2.530044e-04	ci right 3.320750e-04	k: 215	n:740000
CILP2   740000 perm   433 sec   (1709 perm/sec)   p_kst 2.905405e-04   p_cons 7.864189e-01   p_joint 1.636486e-03

Joint ci ratio: 1.123688e-01	ci left: 1.528950e-03	ci right 1.712267e-03	k: 1214	n:750000
Cons ci ratio: 2.359204e-03	ci left: 7.854466e-01	ci right 7.873032e-01	k: 589782	n:750000
KS ci ratio: 2.648502e-01	ci left: 2.533645e-04	ci right 3.319132e-04	k: 218	n:750000
CILP2   750000 perm   442 sec   (1695 perm/sec)   p_kst 2.906667e-04   p_cons 7.863760e-01   p_joint 1.618667e-03

Joint ci ratio: 1.115454e-01	ci left: 1.531854e-03	ci right 1.714084e-03	k: 1232	n:760000
Cons ci ratio: 2.344235e-03	ci left: 7.853661e-01	ci right 7.872106e-01	k: 597580	n:760000
KS ci ratio: 2.636492e-01	ci left: 2.524880e-04	ci right 3.303515e-04	k: 220	n:760000
CILP2   760000 perm   452 sec   (1682 perm/sec)   p_kst 2.894737e-04   p_cons 7.862895e-01   p_joint 1.621053e-03

Joint ci ratio: 1.110068e-01	ci left: 1.527110e-03	ci right 1.707841e-03	k: 1244	n:770000
Cons ci ratio: 2.329088e-03	ci left: 7.853541e-01	ci right 7.871866e-01	k: 605429	n:770000
KS ci ratio: 2.630551e-01	ci left: 2.504219e-04	ci right 3.274455e-04	k: 221	n:770000
CILP2   770000 perm   461 sec   (1669 perm/sec)   p_kst 2.870130e-04   p_cons 7.862714e-01   p_joint 1.615584e-03

Joint ci ratio: 1.210078e-01	ci left: 1.262272e-03	ci right 1.426083e-03	k: 1047	n:780000
Cons ci ratio: 2.313922e-03	ci left: 7.853873e-01	ci right 7.872080e-01	k: 613313	n:780000
KS ci ratio: 2.612955e-01	ci left: 2.508048e-04	ci right 3.273458e-04	k: 224	n:780000
CILP2   780000 perm   471 sec   (1656 perm/sec)   p_kst 2.871795e-04   p_cons 7.862987e-01   p_joint 1.342308e-03

Joint ci ratio: 1.204348e-01	ci left: 1.258569e-03	ci right 1.421072e-03	k: 1057	n:790000
Cons ci ratio: 2.299048e-03	ci left: 7.854198e-01	ci right 7.872288e-01	k: 621197	n:790000
KS ci ratio: 2.607171e-01	ci left: 2.488130e-04	ci right 3.245507e-04	k: 225	n:790000
CILP2   790000 perm   481 sec   (1644 perm/sec)   p_kst 2.848101e-04   p_cons 7.863253e-01   p_joint 1.337975e-03

Joint ci ratio: 1.232681e-01	ci left: 1.184663e-03	ci right 1.341484e-03	k: 1009	n:800000
Cons ci ratio: 2.284772e-03	ci left: 7.854051e-01	ci right 7.872028e-01	k: 629044	n:800000
KS ci ratio: 2.601425e-01	ci left: 2.468712e-04	ci right 3.218253e-04	k: 226	n:800000
CILP2   800000 perm   490 sec   (1632 perm/sec)   p_kst 2.825000e-04   p_cons 7.863050e-01   p_joint 1.261250e-03

Joint ci ratio: 1.084669e-01	ci left: 1.522537e-03	ci right 1.698342e-03	k: 1303	n:810000
Cons ci ratio: 2.322837e-03	ci left: 7.776596e-01	ci right 7.794693e-01	k: 630638	n:810000
KS ci ratio: 2.595716e-01	ci left: 2.449775e-04	ci right 3.191670e-04	k: 227	n:810000
CILP2   810000 perm   500 sec   (1620 perm/sec)   p_kst 2.802469e-04   p_cons 7.785654e-01   p_joint 1.608642e-03

Joint ci ratio: 1.103047e-01	ci left: 1.452963e-03	ci right 1.623760e-03	k: 1260	n:820000
Cons ci ratio: 2.308611e-03	ci left: 7.776680e-01	ci right 7.794666e-01	k: 638426	n:820000
KS ci ratio: 2.573240e-01	ci left: 2.465521e-04	ci right 3.204680e-04	k: 231	n:820000
CILP2   820000 perm   510 sec   (1608 perm/sec)   p_kst 2.817073e-04   p_cons 7.785683e-01   p_joint 1.536585e-03

Joint ci ratio: 1.111475e-01	ci left: 1.413198e-03	ci right 1.580674e-03	k: 1241	n:830000
Cons ci ratio: 2.294779e-03	ci left: 7.776557e-01	ci right 7.794435e-01	k: 646197	n:830000
KS ci ratio: 2.540593e-01	ci left: 2.503473e-04	ci right 3.242980e-04	k: 237	n:830000
CILP2   830000 perm   520 sec   (1597 perm/sec)   p_kst 2.855422e-04   p_cons 7.785506e-01   p_joint 1.495181e-03

Joint ci ratio: 1.108806e-01	ci left: 1.403318e-03	ci right 1.569198e-03	k: 1247	n:840000
Cons ci ratio: 2.280540e-03	ci left: 7.777428e-01	ci right 7.795196e-01	k: 654051	n:840000
KS ci ratio: 2.519507e-01	ci left: 2.518270e-04	ci right 3.255005e-04	k: 241	n:840000
CILP2   840000 perm   529 sec   (1586 perm/sec)   p_kst 2.869048e-04   p_cons 7.786321e-01   p_joint 1.484524e-03

Joint ci ratio: 1.136512e-01	ci left: 1.318199e-03	ci right 1.478171e-03	k: 1187	n:850000
Cons ci ratio: 2.266507e-03	ci left: 7.778360e-01	ci right 7.796021e-01	k: 661912	n:850000
KS ci ratio: 2.498938e-01	ci left: 2.532744e-04	ci right 3.266723e-04	k: 245	n:850000
CILP2   850000 perm   540 sec   (1575 perm/sec)   p_kst 2.882353e-04   p_cons 7.787200e-01   p_joint 1.396471e-03

Joint ci ratio: 1.130345e-01	ci left: 1.317559e-03	ci right 1.476528e-03	k: 1200	n:860000
Cons ci ratio: 2.253087e-03	ci left: 7.778724e-01	ci right 7.796281e-01	k: 669726	n:860000
KS ci ratio: 2.483838e-01	ci left: 2.535999e-04	ci right 3.265795e-04	k: 248	n:860000
CILP2   860000 perm   550 sec   (1564 perm/sec)   p_kst 2.883721e-04   p_cons 7.787512e-01   p_joint 1.395349e-03

Joint ci ratio: 1.123813e-01	ci left: 1.318053e-03	ci right 1.476102e-03	k: 1214	n:870000
Cons ci ratio: 2.240068e-03	ci left: 7.778826e-01	ci right 7.796282e-01	k: 677518	n:870000
KS ci ratio: 2.478868e-01	ci left: 2.517629e-04	ci right 3.240465e-04	k: 249	n:870000
CILP2   870000 perm   560 sec   (1553 perm/sec)   p_kst 2.862069e-04   p_cons 7.787563e-01   p_joint 1.395402e-03

Joint ci ratio: 1.122897e-01	ci left: 1.305283e-03	ci right 1.461665e-03	k: 1216	n:880000
Cons ci ratio: 2.227007e-03	ci left: 7.779336e-01	ci right 7.796691e-01	k: 685346	n:880000
KS ci ratio: 2.449642e-01	ci left: 2.552992e-04	ci right 3.276024e-04	k: 255	n:880000
CILP2   880000 perm   571 sec   (1542 perm/sec)   p_kst 2.897727e-04   p_cons 7.788023e-01   p_joint 1.381818e-03

Joint ci ratio: 1.112878e-01	ci left: 1.314645e-03	ci right 1.470651e-03	k: 1238	n:890000
Cons ci ratio: 2.214518e-03	ci left: 7.779295e-01	ci right 7.796552e-01	k: 693126	n:890000
KS ci ratio: 2.421426e-01	ci left: 2.587609e-04	ci right 3.310736e-04	k: 261	n:890000
CILP2   890000 perm   581 sec   (1532 perm/sec)   p_kst 2.932584e-04   p_cons 7.787933e-01   p_joint 1.391011e-03

Joint ci ratio: 1.109306e-01	ci left: 1.308680e-03	ci right 1.463447e-03	k: 1246	n:900000
Cons ci ratio: 2.201804e-03	ci left: 7.779933e-01	ci right 7.797093e-01	k: 700967	n:900000
KS ci ratio: 2.416821e-01	ci left: 2.569295e-04	ci right 3.285734e-04	k: 262	n:900000
CILP2   900000 perm   592 sec   (1521 perm/sec)   p_kst 2.911111e-04   p_cons 7.788522e-01   p_joint 1.384444e-03

Joint ci ratio: 1.104887e-01	ci left: 1.304983e-03	ci right 1.458658e-03	k: 1256	n:910000
Cons ci ratio: 2.189264e-03	ci left: 7.780624e-01	ci right 7.797688e-01	k: 708814	n:910000
KS ci ratio: 2.385281e-01	ci left: 2.613357e-04	ci right 3.331168e-04	k: 269	n:910000
CILP2   910000 perm   602 sec   (1511 perm/sec)   p_kst 2.956044e-04   p_cons 7.789165e-01   p_joint 1.380220e-03

Joint ci ratio: 1.104017e-01	ci left: 1.292912e-03	ci right 1.445038e-03	k: 1258	n:920000
Cons ci ratio: 2.177479e-03	ci left: 7.780441e-01	ci right 7.797411e-01	k: 716582	n:920000
KS ci ratio: 2.372139e-01	ci left: 2.615617e-04	ci right 3.329508e-04	k: 272	n:920000
CILP2   920000 perm   613 sec   (1501 perm/sec)   p_kst 2.956522e-04   p_cons 7.788935e-01   p_joint 1.367391e-03

Joint ci ratio: 1.101400e-01	ci left: 1.285283e-03	ci right 1.436130e-03	k: 1264	n:930000
Cons ci ratio: 2.165429e-03	ci left: 7.780982e-01	ci right 7.797860e-01	k: 724417	n:930000
KS ci ratio: 2.354948e-01	ci left: 2.627956e-04	ci right 3.339259e-04	k: 276	n:930000
CILP2   930000 perm   624 sec   (1491 perm/sec)   p_kst 2.967742e-04   p_cons 7.789430e-01   p_joint 1.359140e-03

Joint ci ratio: 1.096214e-01	ci left: 1.284025e-03	ci right 1.433968e-03	k: 1276	n:940000
Cons ci ratio: 2.154255e-03	ci left: 7.780426e-01	ci right 7.797216e-01	k: 732150	n:940000
KS ci ratio: 2.338125e-01	ci left: 2.640051e-04	ci right 3.348785e-04	k: 280	n:940000
CILP2   940000 perm   635 sec   (1480 perm/sec)   p_kst 2.978723e-04   p_cons 7.788830e-01   p_joint 1.357447e-03

Joint ci ratio: 1.092374e-01	ci left: 1.279723e-03	ci right 1.428607e-03	k: 1285	n:950000
Cons ci ratio: 2.142945e-03	ci left: 7.780378e-01	ci right 7.797079e-01	k: 739930	n:950000
KS ci ratio: 2.325743e-01	ci left: 2.641995e-04	ci right 3.346955e-04	k: 283	n:950000
CILP2   950000 perm   646 sec   (1470 perm/sec)   p_kst 2.978947e-04   p_cons 7.788737e-01   p_joint 1.352632e-03

Joint ci ratio: 1.089416e-01	ci left: 1.273485e-03	ci right 1.421216e-03	k: 1292	n:960000
Cons ci ratio: 2.131688e-03	ci left: 7.780529e-01	ci right 7.797142e-01	k: 747729	n:960000
KS ci ratio: 2.325747e-01	ci left: 2.614474e-04	ci right 3.312092e-04	k: 283	n:960000
CILP2   960000 perm   657 sec   (1461 perm/sec)   p_kst 2.947917e-04   p_cons 7.788844e-01   p_joint 1.345833e-03

Joint ci ratio: 1.082737e-01	ci left: 1.276403e-03	ci right 1.423507e-03	k: 1308	n:970000
Cons ci ratio: 2.120868e-03	ci left: 7.780253e-01	ci right 7.796782e-01	k: 755487	n:970000
KS ci ratio: 2.309538e-01	ci left: 2.626364e-04	ci right 3.321574e-04	k: 287	n:970000
CILP2   970000 perm   668 sec   (1451 perm/sec)   p_kst 2.958763e-04   p_cons 7.788526e-01   p_joint 1.348454e-03

Joint ci ratio: 1.083573e-01	ci left: 1.261393e-03	ci right 1.406886e-03	k: 1306	n:980000
Cons ci ratio: 2.110185e-03	ci left: 7.780025e-01	ci right 7.796469e-01	k: 763249	n:980000
KS ci ratio: 2.285846e-01	ci left: 2.657265e-04	ci right 3.352422e-04	k: 293	n:980000
CILP2   980000 perm   680 sec   (1442 perm/sec)   p_kst 2.989796e-04   p_cons 7.788255e-01   p_joint 1.332653e-03

Joint ci ratio: 1.091979e-01	ci left: 1.228998e-03	ci right 1.371925e-03	k: 1286	n:990000
Cons ci ratio: 2.099280e-03	ci left: 7.780428e-01	ci right 7.796788e-01	k: 771073	n:990000
KS ci ratio: 2.278112e-01	ci left: 2.649471e-04	ci right 3.339914e-04	k: 295	n:990000
CILP2   990000 perm   692 sec   (1432 perm/sec)   p_kst 2.979798e-04   p_cons 7.788616e-01   p_joint 1.298990e-03

Joint ci ratio: 1.090290e-01	ci left: 1.220598e-03	ci right 1.362315e-03	k: 1290	n:1000000
Cons ci ratio: 2.088725e-03	ci left: 7.780523e-01	ci right 7.796801e-01	k: 778867	n:1000000
KS ci ratio: 2.259109e-01	ci left: 2.670135e-04	ci right 3.359351e-04	k: 300	n:1000000
CILP2   1000000 perm   703 sec   (1423 perm/sec)   p_kst 3.000000e-04   p_cons 7.788670e-01   p_joint 1.290000e-03

Joint ci ratio: 1.086931e-01	ci left: 1.216218e-03	ci right 1.356964e-03	k: 1298	n:1010000
Cons ci ratio: 2.078500e-03	ci left: 7.780329e-01	ci right 7.796527e-01	k: 786632	n:1010000
KS ci ratio: 2.255368e-01	ci left: 2.653039e-04	ci right 3.336550e-04	k: 301	n:1010000
CILP2   1010000 perm   714 sec   (1414 perm/sec)   p_kst 2.980198e-04   p_cons 7.788436e-01   p_joint 1.285149e-03

Joint ci ratio: 1.080708e-01	ci left: 1.218602e-03	ci right 1.358764e-03	k: 1313	n:1020000
Cons ci ratio: 2.067836e-03	ci left: 7.781120e-01	ci right 7.797236e-01	k: 794497	n:1020000
KS ci ratio: 2.236924e-01	ci left: 2.673291e-04	ci right 3.355612e-04	k: 306	n:1020000
CILP2   1020000 perm   726 sec   (1405 perm/sec)   p_kst 3.000000e-04   p_cons 7.789186e-01   p_joint 1.287255e-03

Joint ci ratio: 1.079892e-01	ci left: 1.208660e-03	ci right 1.347567e-03	k: 1315	n:1030000
Cons ci ratio: 2.057879e-03	ci left: 7.780983e-01	ci right 7.797021e-01	k: 802268	n:1030000
KS ci ratio: 2.226074e-01	ci left: 2.674835e-04	ci right 3.353784e-04	k: 309	n:1030000
CILP2   1030000 perm   738 sec   (1396 perm/sec)   p_kst 3.000000e-04   p_cons 7.789010e-01   p_joint 1.276699e-03

Joint ci ratio: 1.075408e-01	ci left: 1.207330e-03	ci right 1.345472e-03	k: 1326	n:1040000
Cons ci ratio: 2.048316e-03	ci left: 7.780424e-01	ci right 7.796387e-01	k: 809995	n:1040000
KS ci ratio: 2.215380e-01	ci left: 2.676357e-04	ci right 3.351984e-04	k: 312	n:1040000
CILP2   1040000 perm   750 sec   (1387 perm/sec)   p_kst 3.000000e-04   p_cons 7.788413e-01   p_joint 1.275000e-03

Joint ci ratio: 1.073391e-01	ci left: 1.200465e-03	ci right 1.337548e-03	k: 1331	n:1050000
Cons ci ratio: 2.038344e-03	ci left: 7.780792e-01	ci right 7.796678e-01	k: 817818	n:1050000
KS ci ratio: 2.204839e-01	ci left: 2.677858e-04	ci right 3.350211e-04	k: 315	n:1050000
CILP2   1050000 perm   762 sec   (1378 perm/sec)   p_kst 3.000000e-04   p_cons 7.788743e-01   p_joint 1.267619e-03

Joint ci ratio: 1.066604e-01	ci left: 1.204749e-03	ci right 1.341396e-03	k: 1348	n:1060000
Cons ci ratio: 2.028588e-03	ci left: 7.781031e-01	ci right 7.796841e-01	k: 825628	n:1060000
KS ci ratio: 2.194447e-01	ci left: 2.679338e-04	ci right 3.348464e-04	k: 318	n:1060000
CILP2   1060000 perm   774 sec   (1369 perm/sec)   p_kst 3.000000e-04   p_cons 7.788943e-01   p_joint 1.271698e-03

Joint ci ratio: 1.062283e-01	ci left: 1.203496e-03	ci right 1.339414e-03	k: 1359	n:1070000
Cons ci ratio: 2.018659e-03	ci left: 7.781798e-01	ci right 7.797532e-01	k: 833495	n:1070000
KS ci ratio: 2.187601e-01	ci left: 2.671963e-04	ci right 3.336886e-04	k: 320	n:1070000
CILP2   1070000 perm   786 sec   (1361 perm/sec)   p_kst 2.990654e-04   p_cons 7.789673e-01   p_joint 1.270093e-03

Joint ci ratio: 1.072604e-01	ci left: 1.168920e-03	ci right 1.302296e-03	k: 1333	n:1080000
Cons ci ratio: 2.009149e-03	ci left: 7.782079e-01	ci right 7.797739e-01	k: 841311	n:1080000
KS ci ratio: 2.180819e-01	ci left: 2.664728e-04	ci right 3.325519e-04	k: 322	n:1080000
CILP2   1080000 perm   799 sec   (1352 perm/sec)   p_kst 2.981481e-04   p_cons 7.789917e-01   p_joint 1.234259e-03

Joint ci ratio: 1.078700e-01	ci left: 1.144804e-03	ci right 1.276218e-03	k: 1318	n:1090000
Cons ci ratio: 1.999922e-03	ci left: 7.782098e-01	ci right 7.797686e-01	k: 849099	n:1090000
KS ci ratio: 2.174100e-01	ci left: 2.657629e-04	ci right 3.314358e-04	k: 324	n:1090000
CILP2   1090000 perm   811 sec   (1343 perm/sec)   p_kst 2.972477e-04   p_cons 7.789899e-01   p_joint 1.209174e-03

Joint ci ratio: 1.084483e-01	ci left: 1.122013e-03	ci right 1.251546e-03	k: 1304	n:1100000
Cons ci ratio: 1.990742e-03	ci left: 7.782252e-01	ci right 7.797769e-01	k: 856902	n:1100000
KS ci ratio: 2.170764e-01	ci left: 2.642065e-04	ci right 3.293812e-04	k: 325	n:1100000
CILP2   1100000 perm   824 sec   (1335 perm/sec)   p_kst 2.954545e-04   p_cons 7.790018e-01   p_joint 1.185455e-03

Joint ci ratio: 1.082415e-01	ci left: 1.116287e-03	ci right 1.244897e-03	k: 1309	n:1110000
Cons ci ratio: 1.981879e-03	ci left: 7.782071e-01	ci right 7.797518e-01	k: 864668	n:1110000
KS ci ratio: 2.154305e-01	ci left: 2.660868e-04	ci right 3.311619e-04	k: 330	n:1110000
CILP2   1110000 perm   836 sec   (1328 perm/sec)   p_kst 2.972973e-04   p_cons 7.789802e-01   p_joint 1.179279e-03

Joint ci ratio: 1.077899e-01	ci left: 1.115876e-03	ci right 1.243869e-03	k: 1320	n:1120000
Cons ci ratio: 1.972841e-03	ci left: 7.782402e-01	ci right 7.797780e-01	k: 872491	n:1120000
KS ci ratio: 2.144608e-01	ci left: 2.662454e-04	ci right 3.310276e-04	k: 333	n:1120000
CILP2   1120000 perm   849 sec   (1320 perm/sec)   p_kst 2.973214e-04   p_cons 7.790098e-01   p_joint 1.178571e-03

Joint ci ratio: 1.082840e-01	ci left: 1.095668e-03	ci right 1.221955e-03	k: 1308	n:1130000
Cons ci ratio: 1.964315e-03	ci left: 7.782046e-01	ci right 7.797356e-01	k: 880237	n:1130000
KS ci ratio: 2.135041e-01	ci left: 2.664019e-04	ci right 3.308951e-04	k: 336	n:1130000
CILP2   1130000 perm   861 sec   (1312 perm/sec)   p_kst 2.973451e-04   p_cons 7.789708e-01   p_joint 1.157522e-03

Joint ci ratio: 1.114852e-01	ci left: 1.022926e-03	ci right 1.144544e-03	k: 1234	n:1140000
Cons ci ratio: 1.955863e-03	ci left: 7.781757e-01	ci right 7.797001e-01	k: 887990	n:1140000
KS ci ratio: 2.125601e-01	ci left: 2.665562e-04	ci right 3.307643e-04	k: 339	n:1140000
CILP2   1140000 perm   874 sec   (1304 perm/sec)   p_kst 2.973684e-04   p_cons 7.789386e-01   p_joint 1.082456e-03

Joint ci ratio: 1.108140e-01	ci left: 1.026712e-03	ci right 1.147997e-03	k: 1249	n:1150000
Cons ci ratio: 1.947078e-03	ci left: 7.782257e-01	ci right 7.797433e-01	k: 895833	n:1150000
KS ci ratio: 2.119377e-01	ci left: 2.658850e-04	ci right 3.297195e-04	k: 341	n:1150000
CILP2   1150000 perm   888 sec   (1296 perm/sec)   p_kst 2.965217e-04   p_cons 7.789852e-01   p_joint 1.086087e-03

Joint ci ratio: 1.110371e-01	ci left: 1.013670e-03	ci right 1.133671e-03	k: 1244	n:1160000
Cons ci ratio: 1.938778e-03	ci left: 7.782093e-01	ci right 7.797204e-01	k: 903600	n:1160000
KS ci ratio: 2.104051e-01	ci left: 2.676753e-04	ci right 3.314150e-04	k: 346	n:1160000
CILP2   1160000 perm   901 sec   (1287 perm/sec)   p_kst 2.982759e-04   p_cons 7.789655e-01   p_joint 1.072414e-03

Joint ci ratio: 1.103301e-01	ci left: 1.018303e-03	ci right 1.138035e-03	k: 1260	n:1170000
Cons ci ratio: 1.930372e-03	ci left: 7.782308e-01	ci right 7.797353e-01	k: 911411	n:1170000
KS ci ratio: 2.086090e-01	ci left: 2.702467e-04	ci right 3.339792e-04	k: 352	n:1170000
CILP2   1170000 perm   915 sec   (1279 perm/sec)   p_kst 3.008547e-04   p_cons 7.789838e-01   p_joint 1.076923e-03

Joint ci ratio: 1.139619e-01	ci left: 9.445996e-04	ci right 1.059567e-03	k: 1181	n:1180000
Cons ci ratio: 1.921947e-03	ci left: 7.782749e-01	ci right 7.797729e-01	k: 919249	n:1180000
KS ci ratio: 2.080206e-01	ci left: 2.695630e-04	ci right 3.329321e-04	k: 354	n:1180000
CILP2   1180000 perm   927 sec   (1272 perm/sec)   p_kst 3.000000e-04   p_cons 7.790246e-01   p_joint 1.000847e-03

Joint ci ratio: 1.169727e-01	ci left: 8.876960e-04	ci right 9.987896e-04	k: 1121	n:1190000
Cons ci ratio: 1.913795e-03	ci left: 7.782888e-01	ci right 7.797805e-01	k: 927052	n:1190000
KS ci ratio: 2.071472e-01	ci left: 2.696877e-04	ci right 3.327863e-04	k: 357	n:1190000
CILP2   1190000 perm   940 sec   (1265 perm/sec)   p_kst 3.000000e-04   p_cons 7.790353e-01   p_joint 9.420168e-04

Joint ci ratio: 1.167132e-01	ci left: 8.843434e-04	ci right 9.947549e-04	k: 1126	n:1200000
Cons ci ratio: 1.905875e-03	ci left: 7.782791e-01	ci right 7.797646e-01	k: 934827	n:1200000
KS ci ratio: 2.062847e-01	ci left: 2.698109e-04	ci right 3.326423e-04	k: 360	n:1200000
CILP2   1200000 perm   954 sec   (1258 perm/sec)   p_kst 3.000000e-04   p_cons 7.790225e-01   p_joint 9.383333e-04

Joint ci ratio: 1.157412e-01	ci left: 8.922809e-04	ci right 1.002692e-03	k: 1145	n:1210000
Cons ci ratio: 1.898003e-03	ci left: 7.782787e-01	ci right 7.797580e-01	k: 942613	n:1210000
KS ci ratio: 2.059997e-01	ci left: 2.683648e-04	ci right 3.307622e-04	k: 361	n:1210000
CILP2   1210000 perm   967 sec   (1251 perm/sec)   p_kst 2.983471e-04   p_cons 7.790190e-01   p_joint 9.462810e-04

Joint ci ratio: 1.152394e-01	ci left: 8.929271e-04	ci right 1.002907e-03	k: 1155	n:1220000
Cons ci ratio: 1.890321e-03	ci left: 7.782610e-01	ci right 7.797344e-01	k: 950378	n:1220000
KS ci ratio: 2.054331e-01	ci left: 2.677200e-04	ci right 3.297748e-04	k: 363	n:1220000
CILP2   1220000 perm   981 sec   (1244 perm/sec)   p_kst 2.975410e-04   p_cons 7.789984e-01   p_joint 9.467213e-04

Joint ci ratio: 1.149912e-01	ci left: 8.896155e-04	ci right 9.989353e-04	k: 1160	n:1230000
Cons ci ratio: 1.882444e-03	ci left: 7.782966e-01	ci right 7.797639e-01	k: 958208	n:1230000
KS ci ratio: 2.045917e-01	ci left: 2.678572e-04	ci right 3.296577e-04	k: 366	n:1230000
CILP2   1230000 perm   995 sec   (1236 perm/sec)   p_kst 2.975610e-04   p_cons 7.790309e-01   p_joint 9.430894e-04

Joint ci ratio: 1.142553e-01	ci left: 8.941912e-04	ci right 1.003323e-03	k: 1175	n:1240000
Cons ci ratio: 1.874883e-03	ci left: 7.782913e-01	ci right 7.797526e-01	k: 965988	n:1240000
KS ci ratio: 2.032120e-01	ci left: 2.695235e-04	ci right 3.312370e-04	k: 371	n:1240000
CILP2   1240000 perm   1009 sec   (1229 perm/sec)   p_kst 2.991935e-04   p_cons 7.790226e-01   p_joint 9.475806e-04

Joint ci ratio: 1.139651e-01	ci left: 8.917006e-04	ci right 1.000233e-03	k: 1181	n:1250000
Cons ci ratio: 1.867530e-03	ci left: 7.782644e-01	ci right 7.797199e-01	k: 973741	n:1250000
KS ci ratio: 2.032122e-01	ci left: 2.673673e-04	ci right 3.285872e-04	k: 371	n:1250000
CILP2   1250000 perm   1023 sec   (1222 perm/sec)   p_kst 2.968000e-04   p_cons 7.789928e-01   p_joint 9.448000e-04

Joint ci ratio: 1.136771e-01	ci left: 8.892499e-04	ci right 9.971923e-04	k: 1187	n:1260000
Cons ci ratio: 1.860481e-03	ci left: 7.781974e-01	ci right 7.796473e-01	k: 981443	n:1260000
KS ci ratio: 2.029398e-01	ci left: 2.659986e-04	ci right 3.268133e-04	k: 372	n:1260000
CILP2   1260000 perm   1037 sec   (1215 perm/sec)   p_kst 2.952381e-04   p_cons 7.789230e-01   p_joint 9.420635e-04

Joint ci ratio: 9.169427e-02	ci left: 1.371103e-03	ci right 1.503629e-03	k: 1824	n:1270000
Cons ci ratio: 1.853071e-03	ci left: 7.782135e-01	ci right 7.796577e-01	k: 989249	n:1270000
KS ci ratio: 2.010616e-01	ci left: 2.691372e-04	ci right 3.300301e-04	k: 379	n:1270000
CILP2   1270000 perm   1051 sec   (1208 perm/sec)   p_kst 2.984252e-04   p_cons 7.789362e-01   p_joint 1.436220e-03

Joint ci ratio: 9.154421e-02	ci left: 1.364971e-03	ci right 1.496677e-03	k: 1830	n:1280000
Cons ci ratio: 1.845648e-03	ci left: 7.782481e-01	ci right 7.796866e-01	k: 997079	n:1280000
KS ci ratio: 2.005346e-01	ci left: 2.685185e-04	ci right 3.290927e-04	k: 381	n:1280000
CILP2   1280000 perm   1065 sec   (1202 perm/sec)   p_kst 2.976563e-04   p_cons 7.789680e-01   p_joint 1.429687e-03

Joint ci ratio: 9.551896e-02	ci left: 1.241583e-03	ci right 1.366875e-03	k: 1681	n:1290000
Cons ci ratio: 1.838715e-03	ci left: 7.782069e-01	ci right 7.796399e-01	k: 1004812	n:1290000
KS ci ratio: 2.005349e-01	ci left: 2.664369e-04	ci right 3.265417e-04	k: 381	n:1290000
CILP2   1290000 perm   1079 sec   (1195 perm/sec)   p_kst 2.953488e-04   p_cons 7.789240e-01   p_joint 1.303101e-03

Joint ci ratio: 9.586245e-02	ci left: 1.223021e-03	ci right 1.346910e-03	k: 1669	n:1300000
Cons ci ratio: 1.831618e-03	ci left: 7.782118e-01	ci right 7.796393e-01	k: 1012604	n:1300000
KS ci ratio: 1.997520e-01	ci left: 2.665795e-04	ci right 3.264530e-04	k: 384	n:1300000
CILP2   1300000 perm   1094 sec   (1188 perm/sec)   p_kst 2.953846e-04   p_cons 7.789262e-01   p_joint 1.283846e-03

Joint ci ratio: 9.563384e-02	ci left: 1.219646e-03	ci right 1.342881e-03	k: 1677	n:1310000
Cons ci ratio: 1.824676e-03	ci left: 7.782029e-01	ci right 7.796249e-01	k: 1020378	n:1310000
KS ci ratio: 1.992353e-01	ci left: 2.659950e-04	ci right 3.255639e-04	k: 386	n:1310000
CILP2   1310000 perm   1108 sec   (1182 perm/sec)   p_kst 2.946565e-04   p_cons 7.789145e-01   p_joint 1.280153e-03

Joint ci ratio: 9.566285e-02	ci left: 1.209666e-03	ci right 1.331933e-03	k: 1676	n:1320000
Cons ci ratio: 1.817915e-03	ci left: 7.781744e-01	ci right 7.795911e-01	k: 1028126	n:1320000
KS ci ratio: 1.984675e-01	ci left: 2.661394e-04	ci right 3.254832e-04	k: 389	n:1320000
CILP2   1320000 perm   1123 sec   (1176 perm/sec)   p_kst 2.946970e-04   p_cons 7.788833e-01   p_joint 1.269697e-03

Joint ci ratio: 9.884192e-02	ci left: 1.122807e-03	ci right 1.240284e-03	k: 1570	n:1330000
Cons ci ratio: 1.810969e-03	ci left: 7.781960e-01	ci right 7.796073e-01	k: 1035940	n:1330000
KS ci ratio: 1.979606e-01	ci left: 2.655675e-04	ci right 3.246143e-04	k: 391	n:1330000
CILP2   1330000 perm   1137 sec   (1170 perm/sec)   p_kst 2.939850e-04   p_cons 7.789023e-01   p_joint 1.180451e-03

Joint ci ratio: 9.837328e-02	ci left: 1.125346e-03	ci right 1.242498e-03	k: 1585	n:1340000
Cons ci ratio: 1.804168e-03	ci left: 7.782046e-01	ci right 7.796106e-01	k: 1043737	n:1340000
KS ci ratio: 1.972075e-01	ci left: 2.657137e-04	ci right 3.245412e-04	k: 394	n:1340000
CILP2   1340000 perm   1151 sec   (1164 perm/sec)   p_kst 2.940299e-04   p_cons 7.789082e-01   p_joint 1.182836e-03

Joint ci ratio: 9.815708e-02	ci left: 1.122068e-03	ci right 1.238607e-03	k: 1592	n:1350000
Cons ci ratio: 1.797323e-03	ci left: 7.782361e-01	ci right 7.796368e-01	k: 1051565	n:1350000
KS ci ratio: 1.969584e-01	ci left: 2.644496e-04	ci right 3.229145e-04	k: 395	n:1350000
CILP2   1350000 perm   1166 sec   (1158 perm/sec)   p_kst 2.925926e-04   p_cons 7.789370e-01   p_joint 1.179259e-03

Joint ci ratio: 9.800364e-02	ci left: 1.117404e-03	ci right 1.233267e-03	k: 1597	n:1360000
Cons ci ratio: 1.790272e-03	ci left: 7.783216e-01	ci right 7.797169e-01	k: 1059467	n:1360000
KS ci ratio: 1.964630e-01	ci left: 2.639033e-04	ci right 3.220830e-04	k: 397	n:1360000
CILP2   1360000 perm   1181 sec   (1152 perm/sec)   p_kst 2.919118e-04   p_cons 7.790199e-01   p_joint 1.174265e-03

Joint ci ratio: 9.766809e-02	ci left: 1.117080e-03	ci right 1.232490e-03	k: 1608	n:1370000
Cons ci ratio: 1.783746e-03	ci left: 7.783203e-01	ci right 7.797106e-01	k: 1067252	n:1370000
KS ci ratio: 1.952403e-01	ci left: 2.654477e-04	ci right 3.235604e-04	k: 402	n:1370000
CILP2   1370000 perm   1196 sec   (1146 perm/sec)   p_kst 2.934307e-04   p_cons 7.790161e-01   p_joint 1.173723e-03

Joint ci ratio: 9.834394e-02	ci left: 1.093434e-03	ci right 1.207227e-03	k: 1586	n:1380000
Cons ci ratio: 1.777175e-03	ci left: 7.783416e-01	ci right 7.797268e-01	k: 1075068	n:1380000
KS ci ratio: 1.949987e-01	ci left: 2.642134e-04	ci right 3.219758e-04	k: 403	n:1380000
CILP2   1380000 perm   1211 sec   (1140 perm/sec)   p_kst 2.920290e-04   p_cons 7.790348e-01   p_joint 1.149275e-03

Joint ci ratio: 1.003917e-01	ci left: 1.040667e-03	ci right 1.151357e-03	k: 1522	n:1390000
Cons ci ratio: 1.770775e-03	ci left: 7.783431e-01	ci right 7.797233e-01	k: 1082857	n:1390000
KS ci ratio: 2.026710e-01	ci left: 2.418036e-04	ci right 2.970044e-04	k: 373	n:1390000
CILP2   1390000 perm   1226 sec   (1134 perm/sec)   p_kst 2.683453e-04   p_cons 7.790338e-01   p_joint 1.094964e-03

Joint ci ratio: 1.006904e-01	ci left: 1.026966e-03	ci right 1.136543e-03	k: 1513	n:1400000
Cons ci ratio: 1.764496e-03	ci left: 7.783346e-01	ci right 7.797099e-01	k: 1090632	n:1400000
KS ci ratio: 2.018630e-01	ci left: 2.421108e-04	ci right 2.971341e-04	k: 376	n:1400000
CILP2   1400000 perm   1241 sec   (1128 perm/sec)   p_kst 2.685714e-04   p_cons 7.790229e-01   p_joint 1.080714e-03

Joint ci ratio: 1.003925e-01	ci left: 1.025905e-03	ci right 1.135026e-03	k: 1522	n:1410000
Cons ci ratio: 1.758547e-03	ci left: 7.782744e-01	ci right 7.796450e-01	k: 1098334	n:1410000
KS ci ratio: 2.008005e-01	ci left: 2.430876e-04	ci right 2.980065e-04	k: 380	n:1410000
CILP2   1410000 perm   1256 sec   (1122 perm/sec)   p_kst 2.695035e-04   p_cons 7.789603e-01   p_joint 1.079433e-03

Joint ci ratio: 1.027853e-01	ci left: 9.706354e-04	ci right 1.076487e-03	k: 1452	n:1420000
Cons ci ratio: 1.752554e-03	ci left: 7.782356e-01	ci right 7.796013e-01	k: 1106065	n:1420000
KS ci ratio: 1.994956e-01	ci left: 2.447204e-04	ci right 2.996052e-04	k: 385	n:1420000
CILP2   1420000 perm   1272 sec   (1116 perm/sec)   p_kst 2.711268e-04   p_cons 7.789190e-01   p_joint 1.022535e-03

Joint ci ratio: 1.025738e-01	ci left: 9.679357e-04	ci right 1.073263e-03	k: 1458	n:1430000
Cons ci ratio: 1.746615e-03	ci left: 7.781986e-01	ci right 7.795597e-01	k: 1113798	n:1430000
KS ci ratio: 1.982157e-01	ci left: 2.463315e-04	ci right 3.011804e-04	k: 390	n:1430000
CILP2   1430000 perm   1288 sec   (1111 perm/sec)   p_kst 2.727273e-04   p_cons 7.788797e-01   p_joint 1.019580e-03

Joint ci ratio: 1.023288e-01	ci left: 9.659505e-04	ci right 1.070795e-03	k: 1465	n:1440000
Cons ci ratio: 1.740592e-03	ci left: 7.781907e-01	ci right 7.795471e-01	k: 1121572	n:1440000
KS ci ratio: 1.979629e-01	ci left: 2.452808e-04	ci right 2.998177e-04	k: 391	n:1440000
CILP2   1440000 perm   1303 sec   (1105 perm/sec)   p_kst 2.715278e-04   p_cons 7.788694e-01   p_joint 1.017361e-03

Joint ci ratio: 1.020854e-01	ci left: 9.639929e-04	ci right 1.068362e-03	k: 1472	n:1450000
Cons ci ratio: 1.734998e-03	ci left: 7.781097e-01	ci right 7.794616e-01	k: 1129240	n:1450000
KS ci ratio: 1.977110e-01	ci left: 2.442447e-04	ci right 2.984738e-04	k: 392	n:1450000
CILP2   1450000 perm   1319 sec   (1099 perm/sec)   p_kst 2.703448e-04   p_cons 7.787862e-01   p_joint 1.015172e-03

Joint ci ratio: 1.017750e-01	ci left: 9.633974e-04	ci right 1.067365e-03	k: 1481	n:1460000
Cons ci ratio: 1.728946e-03	ci left: 7.781320e-01	ci right 7.794792e-01	k: 1137057	n:1460000
KS ci ratio: 1.974600e-01	ci left: 2.432229e-04	ci right 2.971482e-04	k: 393	n:1460000
CILP2   1460000 perm   1334 sec   (1094 perm/sec)   p_kst 2.691781e-04   p_cons 7.788062e-01   p_joint 1.014384e-03

Joint ci ratio: 1.014674e-01	ci left: 9.628105e-04	ci right 1.066382e-03	k: 1490	n:1470000
Cons ci ratio: 1.722763e-03	ci left: 7.781928e-01	ci right 7.795353e-01	k: 1144931	n:1470000
KS ci ratio: 1.967125e-01	ci left: 2.435084e-04	ci right 2.972682e-04	k: 396	n:1470000
CILP2   1470000 perm   1350 sec   (1089 perm/sec)   p_kst 2.693878e-04   p_cons 7.788646e-01   p_joint 1.013605e-03

Joint ci ratio: 1.011626e-01	ci left: 9.622320e-04	ci right 1.065412e-03	k: 1499	n:1480000
Cons ci ratio: 1.716784e-03	ci left: 7.782251e-01	ci right 7.795630e-01	k: 1152764	n:1480000
KS ci ratio: 1.954852e-01	ci left: 2.450756e-04	ci right 2.988037e-04	k: 401	n:1480000
CILP2   1480000 perm   1366 sec   (1083 perm/sec)   p_kst 2.709459e-04   p_cons 7.788946e-01   p_joint 1.012838e-03

Joint ci ratio: 1.007603e-01	ci left: 9.636244e-04	ci right 1.066519e-03	k: 1511	n:1490000
Cons ci ratio: 1.711093e-03	ci left: 7.782113e-01	ci right 7.795447e-01	k: 1160529	n:1490000
KS ci ratio: 1.950008e-01	ci left: 2.447075e-04	ci right 2.982061e-04	k: 403	n:1490000
CILP2   1490000 perm   1383 sec   (1077 perm/sec)   p_kst 2.704698e-04   p_cons 7.788785e-01   p_joint 1.014094e-03

Joint ci ratio: 1.004949e-01	ci left: 9.623993e-04	ci right 1.064876e-03	k: 1519	n:1500000
Cons ci ratio: 1.705389e-03	ci left: 7.782117e-01	ci right 7.795406e-01	k: 1168315	n:1500000
KS ci ratio: 1.950010e-01	ci left: 2.430761e-04	ci right 2.962181e-04	k: 403	n:1500000
CILP2   1500000 perm   1399 sec   (1072 perm/sec)   p_kst 2.686667e-04   p_cons 7.788767e-01   p_joint 1.012667e-03

Joint ci ratio: 1.007944e-01	ci left: 9.502153e-04	ci right 1.051714e-03	k: 1510	n:1510000
Cons ci ratio: 1.699794e-03	ci left: 7.782014e-01	ci right 7.795260e-01	k: 1176085	n:1510000
KS ci ratio: 1.935687e-01	ci left: 2.452465e-04	ci right 2.984229e-04	k: 409	n:1510000
CILP2   1510000 perm   1415 sec   (1067 perm/sec)   p_kst 2.708609e-04   p_cons 7.788642e-01   p_joint 1.000000e-03

Joint ci ratio: 1.016741e-01	ci left: 9.272911e-04	ci right 1.027258e-03	k: 1484	n:1520000
Cons ci ratio: 1.694221e-03	ci left: 7.781979e-01	ci right 7.795181e-01	k: 1183865	n:1520000
KS ci ratio: 1.930983e-01	ci left: 2.448852e-04	ci right 2.978390e-04	k: 411	n:1520000
CILP2   1520000 perm   1431 sec   (1062 perm/sec)   p_kst 2.703947e-04   p_cons 7.788586e-01   p_joint 9.763158e-04

Joint ci ratio: 1.066023e-01	ci left: 8.359264e-04	ci right 9.306852e-04	k: 1350	n:1530000
Cons ci ratio: 1.688498e-03	ci left: 7.782363e-01	ci right 7.795521e-01	k: 1191709	n:1530000
KS ci ratio: 1.923991e-01	ci left: 2.451508e-04	ci right 2.979476e-04	k: 414	n:1530000
CILP2   1530000 perm   1448 sec   (1057 perm/sec)   p_kst 2.705882e-04   p_cons 7.788948e-01   p_joint 8.823529e-04

Joint ci ratio: 1.061708e-01	ci left: 8.374511e-04	ci right 9.319746e-04	k: 1361	n:1540000
Cons ci ratio: 1.682965e-03	ci left: 7.782470e-01	ci right 7.795585e-01	k: 1199511	n:1540000
KS ci ratio: 1.914784e-01	ci left: 2.460315e-04	ci right 2.987349e-04	k: 418	n:1540000
CILP2   1540000 perm   1464 sec   (1052 perm/sec)   p_kst 2.714286e-04   p_cons 7.789032e-01   p_joint 8.837662e-04

Joint ci ratio: 1.062102e-01	ci left: 8.314201e-04	ci right 9.252997e-04	k: 1360	n:1550000
Cons ci ratio: 1.677506e-03	ci left: 7.782536e-01	ci right 7.795608e-01	k: 1207307	n:1550000
KS ci ratio: 1.907966e-01	ci left: 2.462871e-04	ci right 2.988356e-04	k: 421	n:1550000
CILP2   1550000 perm   1480 sec   (1047 perm/sec)   p_kst 2.716129e-04   p_cons 7.789077e-01   p_joint 8.774194e-04

Joint ci ratio: 1.057835e-01	ci left: 8.329548e-04	ci right 9.266064e-04	k: 1371	n:1560000
Cons ci ratio: 1.671978e-03	ci left: 7.782852e-01	ci right 7.795882e-01	k: 1215142	n:1560000
KS ci ratio: 1.901220e-01	ci left: 2.465397e-04	ci right 2.989346e-04	k: 424	n:1560000
CILP2   1560000 perm   1496 sec   (1043 perm/sec)   p_kst 2.717949e-04   p_cons 7.789372e-01   p_joint 8.788462e-04

Joint ci ratio: 1.058610e-01	ci left: 8.264091e-04	ci right 9.193970e-04	k: 1369	n:1570000
Cons ci ratio: 1.666621e-03	ci left: 7.782921e-01	ci right 7.795909e-01	k: 1222939	n:1570000
KS ci ratio: 1.894545e-01	ci left: 2.467894e-04	ci right 2.990321e-04	k: 427	n:1570000
CILP2   1570000 perm   1512 sec   (1038 perm/sec)   p_kst 2.719745e-04   p_cons 7.789420e-01   p_joint 8.719745e-04

Joint ci ratio: 1.055917e-01	ci left: 8.254918e-04	ci right 9.181256e-04	k: 1376	n:1580000
Cons ci ratio: 1.661517e-03	ci left: 7.782572e-01	ci right 7.795519e-01	k: 1230670	n:1580000
KS ci ratio: 1.890134e-01	ci left: 2.464333e-04	ci right 2.984652e-04	k: 429	n:1580000
CILP2   1580000 perm   1529 sec   (1033 perm/sec)   p_kst 2.715190e-04   p_cons 7.789051e-01   p_joint 8.708861e-04

Joint ci ratio: 1.053244e-01	ci left: 8.245864e-04	ci right 9.168698e-04	k: 1383	n:1590000
Cons ci ratio: 1.656247e-03	ci left: 7.782667e-01	ci right 7.795574e-01	k: 1238471	n:1590000
KS ci ratio: 1.881403e-01	ci left: 2.472804e-04	ci right 2.992224e-04	k: 433	n:1590000
CILP2   1590000 perm   1547 sec   (1028 perm/sec)   p_kst 2.723270e-04   p_cons 7.789126e-01   p_joint 8.698113e-04

Joint ci ratio: 1.050591e-01	ci left: 8.236927e-04	ci right 9.156295e-04	k: 1390	n:1600000
Cons ci ratio: 1.651124e-03	ci left: 7.782562e-01	ci right 7.795428e-01	k: 1246240	n:1600000
KS ci ratio: 1.877083e-01	ci left: 2.469261e-04	ci right 2.986610e-04	k: 435	n:1600000
CILP2   1600000 perm   1564 sec   (1023 perm/sec)   p_kst 2.718750e-04   p_cons 7.789000e-01   p_joint 8.687500e-04

Joint ci ratio: 1.048709e-01	ci left: 8.216006e-04	ci right 9.131295e-04	k: 1395	n:1610000
Cons ci ratio: 1.646220e-03	ci left: 7.782097e-01	ci right 7.794924e-01	k: 1253951	n:1610000
KS ci ratio: 1.872793e-01	ci left: 2.465763e-04	ci right 2.981065e-04	k: 437	n:1610000
CILP2   1610000 perm   1581 sec   (1019 perm/sec)   p_kst 2.714286e-04   p_cons 7.788516e-01   p_joint 8.664596e-04

Joint ci ratio: 1.046463e-01	ci left: 8.201356e-04	ci right 9.112936e-04	k: 1401	n:1620000
Cons ci ratio: 1.641241e-03	ci left: 7.781885e-01	ci right 7.794673e-01	k: 1261702	n:1620000
KS ci ratio: 1.864299e-01	ci left: 2.474079e-04	ci right 2.988508e-04	k: 441	n:1620000
CILP2   1620000 perm   1598 sec   (1014 perm/sec)   p_kst 2.722222e-04   p_cons 7.788284e-01   p_joint 8.648148e-04

Joint ci ratio: 1.043120e-01	ci left: 8.204813e-04	ci right 9.113686e-04	k: 1410	n:1630000
Cons ci ratio: 1.636095e-03	ci left: 7.782124e-01	ci right 7.794872e-01	k: 1269526	n:1630000
KS ci ratio: 1.860096e-01	ci left: 2.470598e-04	ci right 2.983015e-04	k: 443	n:1630000
CILP2   1630000 perm   1616 sec   (1009 perm/sec)   p_kst 2.717791e-04   p_cons 7.788503e-01   p_joint 8.650307e-04

Joint ci ratio: 1.039443e-01	ci left: 8.214171e-04	ci right 9.120677e-04	k: 1420	n:1640000
Cons ci ratio: 1.630959e-03	ci left: 7.782439e-01	ci right 7.795148e-01	k: 1277363	n:1640000
KS ci ratio: 1.851772e-01	ci left: 2.478791e-04	ci right 2.990348e-04	k: 447	n:1640000
CILP2   1640000 perm   1634 sec   (1004 perm/sec)   p_kst 2.725610e-04   p_cons 7.788799e-01   p_joint 8.658537e-04

Joint ci ratio: 1.050227e-01	ci left: 7.993219e-04	ci right 8.885057e-04	k: 1391	n:1650000
Cons ci ratio: 1.626189e-03	ci left: 7.782078e-01	ci right 7.794749e-01	k: 1285089	n:1650000
KS ci ratio: 1.847653e-01	ci left: 2.475328e-04	ci right 2.984906e-04	k: 449	n:1650000
CILP2   1650000 perm   1652 sec   (999 perm/sec)   p_kst 2.721212e-04   p_cons 7.788418e-01   p_joint 8.430303e-04

Joint ci ratio: 1.047222e-01	ci left: 7.991996e-04	ci right 8.880989e-04	k: 1399	n:1660000
Cons ci ratio: 1.621421e-03	ci left: 7.781805e-01	ci right 7.794438e-01	k: 1292829	n:1660000
KS ci ratio: 1.843561e-01	ci left: 2.471908e-04	ci right 2.979529e-04	k: 451	n:1660000
CILP2   1660000 perm   1669 sec   (995 perm/sec)   p_kst 2.716867e-04   p_cons 7.788127e-01   p_joint 8.427711e-04

Joint ci ratio: 1.044243e-01	ci left: 7.990791e-04	ci right 8.876966e-04	k: 1407	n:1670000
Cons ci ratio: 1.616503e-03	ci left: 7.781943e-01	ci right 7.794538e-01	k: 1300637	n:1670000
KS ci ratio: 1.839497e-01	ci left: 2.468530e-04	ci right 2.974215e-04	k: 453	n:1670000
CILP2   1670000 perm   1687 sec   (990 perm/sec)   p_kst 2.712575e-04   p_cons 7.788246e-01   p_joint 8.425150e-04

Joint ci ratio: 1.040554e-01	ci left: 8.001199e-04	ci right 8.885202e-04	k: 1417	n:1680000
Cons ci ratio: 1.611800e-03	ci left: 7.781716e-01	ci right 7.794274e-01	k: 1308384	n:1680000
KS ci ratio: 1.835458e-01	ci left: 2.465194e-04	ci right 2.968963e-04	k: 455	n:1680000
CILP2   1680000 perm   1705 sec   (985 perm/sec)   p_kst 2.708333e-04   p_cons 7.788000e-01   p_joint 8.434524e-04

Joint ci ratio: 1.039823e-01	ci left: 7.965380e-04	ci right 8.844770e-04	k: 1419	n:1690000
Cons ci ratio: 1.607060e-03	ci left: 7.781658e-01	ci right 7.794179e-01	k: 1316159	n:1690000
KS ci ratio: 1.833450e-01	ci left: 2.456252e-04	ci right 2.957584e-04	k: 456	n:1690000
CILP2   1690000 perm   1723 sec   (981 perm/sec)   p_kst 2.698225e-04   p_cons 7.787923e-01   p_joint 8.396450e-04

Joint ci ratio: 1.036906e-01	ci left: 7.964361e-04	ci right 8.841022e-04	k: 1427	n:1700000
Cons ci ratio: 1.602266e-03	ci left: 7.781806e-01	ci right 7.794290e-01	k: 1323969	n:1700000
KS ci ratio: 1.827462e-01	ci left: 2.458642e-04	ci right 2.958641e-04	k: 459	n:1700000
CILP2   1700000 perm   1740 sec   (977 perm/sec)   p_kst 2.700000e-04   p_cons 7.788053e-01   p_joint 8.394118e-04

Joint ci ratio: 1.051377e-01	ci left: 7.695666e-04	ci right 8.555303e-04	k: 1388	n:1710000
Cons ci ratio: 1.597417e-03	ci left: 7.782164e-01	ci right 7.794611e-01	k: 1331815	n:1710000
KS ci ratio: 1.817609e-01	ci left: 2.472170e-04	ci right 2.971911e-04	k: 464	n:1710000
CILP2   1710000 perm   1759 sec   (972 perm/sec)   p_kst 2.713450e-04   p_cons 7.788392e-01   p_joint 8.116959e-04

Joint ci ratio: 1.052138e-01	ci left: 7.639601e-04	ci right 8.493631e-04	k: 1386	n:1720000
Cons ci ratio: 1.592864e-03	ci left: 7.781970e-01	ci right 7.794381e-01	k: 1339567	n:1720000
KS ci ratio: 1.809840e-01	ci left: 2.479997e-04	ci right 2.978943e-04	k: 468	n:1720000
CILP2   1720000 perm   1777 sec   (968 perm/sec)   p_kst 2.720930e-04   p_cons 7.788180e-01   p_joint 8.058140e-04

Joint ci ratio: 1.048740e-01	ci left: 7.646098e-04	ci right 8.497924e-04	k: 1395	n:1730000
Cons ci ratio: 1.588204e-03	ci left: 7.782097e-01	ci right 7.794472e-01	k: 1347374	n:1730000
KS ci ratio: 1.807915e-01	ci left: 2.471180e-04	ci right 2.967766e-04	k: 469	n:1730000
CILP2   1730000 perm   1795 sec   (964 perm/sec)   p_kst 2.710983e-04   p_cons 7.788289e-01   p_joint 8.063584e-04

Joint ci ratio: 1.051006e-01	ci left: 7.568576e-04	ci right 8.413699e-04	k: 1389	n:1740000
Cons ci ratio: 1.583727e-03	ci left: 7.781912e-01	ci right 7.794251e-01	k: 1355127	n:1740000
KS ci ratio: 1.804081e-01	ci left: 2.467953e-04	ci right 2.962723e-04	k: 471	n:1740000
CILP2   1740000 perm   1815 sec   (959 perm/sec)   p_kst 2.706897e-04   p_cons 7.788086e-01   p_joint 7.982759e-04

Joint ci ratio: 9.411775e-02	ci left: 9.436688e-04	ci right 1.037424e-03	k: 1732	n:1750000
Cons ci ratio: 1.579211e-03	ci left: 7.781895e-01	ci right 7.794199e-01	k: 1362909	n:1750000
KS ci ratio: 1.794600e-01	ci left: 2.481135e-04	ci right 2.975650e-04	k: 476	n:1750000
CILP2   1750000 perm   1833 sec   (955 perm/sec)   p_kst 2.720000e-04   p_cons 7.788051e-01   p_joint 9.897143e-04

Joint ci ratio: 9.384737e-02	ci left: 9.438553e-04	ci right 1.037345e-03	k: 1742	n:1760000
Cons ci ratio: 1.574550e-03	ci left: 7.782282e-01	ci right 7.794550e-01	k: 1370762	n:1760000
KS ci ratio: 1.783416e-01	ci left: 2.499602e-04	ci right 2.994358e-04	k: 482	n:1760000
CILP2   1760000 perm   1851 sec   (951 perm/sec)   p_kst 2.738636e-04   p_cons 7.788420e-01   p_joint 9.897727e-04

Joint ci ratio: 9.357931e-02	ci left: 9.440401e-04	ci right 1.037266e-03	k: 1752	n:1770000
Cons ci ratio: 1.570099e-03	ci left: 7.782291e-01	ci right 7.794525e-01	k: 1378549	n:1770000
KS ci ratio: 1.777903e-01	ci left: 2.501674e-04	ci right 2.995145e-04	k: 485	n:1770000
CILP2   1770000 perm   1870 sec   (947 perm/sec)   p_kst 2.740113e-04   p_cons 7.788412e-01   p_joint 9.898305e-04

Joint ci ratio: 9.344626e-02	ci left: 9.414798e-04	ci right 1.034313e-03	k: 1757	n:1780000
Cons ci ratio: 1.565541e-03	ci left: 7.782621e-01	ci right 7.794820e-01	k: 1386393	n:1780000
KS ci ratio: 1.777905e-01	ci left: 2.487619e-04	ci right 2.978319e-04	k: 485	n:1780000
CILP2   1780000 perm   1888 sec   (943 perm/sec)   p_kst 2.724719e-04   p_cons 7.788725e-01   p_joint 9.870787e-04

Joint ci ratio: 9.310258e-02	ci left: 9.433133e-04	ci right 1.035967e-03	k: 1770	n:1790000
Cons ci ratio: 1.560976e-03	ci left: 7.783048e-01	ci right 7.795212e-01	k: 1394255	n:1790000
KS ci ratio: 1.772443e-01	ci left: 2.489737e-04	ci right 2.979184e-04	k: 488	n:1790000
CILP2   1790000 perm   1906 sec   (939 perm/sec)   p_kst 2.726257e-04   p_cons 7.789134e-01   p_joint 9.888268e-04

Joint ci ratio: 9.284083e-02	ci left: 9.434991e-04	ci right 1.035896e-03	k: 1780	n:1800000
Cons ci ratio: 1.556747e-03	ci left: 7.782814e-01	ci right 7.794944e-01	k: 1401999	n:1800000
KS ci ratio: 1.770634e-01	ci left: 2.481214e-04	ci right 2.968434e-04	k: 489	n:1800000
CILP2   1800000 perm   1925 sec   (935 perm/sec)   p_kst 2.716667e-04   p_cons 7.788883e-01   p_joint 9.888889e-04

Joint ci ratio: 9.258128e-02	ci left: 9.436831e-04	ci right 1.035826e-03	k: 1790	n:1810000
Cons ci ratio: 1.552533e-03	ci left: 7.782626e-01	ci right 7.794724e-01	k: 1409751	n:1810000
KS ci ratio: 1.765238e-01	ci left: 2.483347e-04	ci right 2.969341e-04	k: 492	n:1810000
CILP2   1810000 perm   1944 sec   (931 perm/sec)   p_kst 2.718232e-04   p_cons 7.788680e-01   p_joint 9.889503e-04

Joint ci ratio: 9.252983e-02	ci left: 9.395714e-04	ci right 1.031259e-03	k: 1792	n:1820000
Cons ci ratio: 1.548399e-03	ci left: 7.782337e-01	ci right 7.794402e-01	k: 1417484	n:1820000
KS ci ratio: 1.763452e-01	ci left: 2.474954e-04	ci right 2.958763e-04	k: 493	n:1820000
CILP2   1820000 perm   1962 sec   (927 perm/sec)   p_kst 2.708791e-04   p_cons 7.788374e-01   p_joint 9.846154e-04

Joint ci ratio: 9.237550e-02	ci left: 9.376400e-04	ci right 1.028978e-03	k: 1798	n:1830000
Cons ci ratio: 1.543941e-03	ci left: 7.782849e-01	ci right 7.794880e-01	k: 1425363	n:1830000
KS ci ratio: 1.761670e-01	ci left: 2.466653e-04	ci right 2.948301e-04	k: 494	n:1830000
CILP2   1830000 perm   1981 sec   (924 perm/sec)   p_kst 2.699454e-04   p_cons 7.788869e-01   p_joint 9.825137e-04

Joint ci ratio: 9.219637e-02	ci left: 9.362607e-04	ci right 1.027278e-03	k: 1805	n:1840000
Cons ci ratio: 1.539751e-03	ci left: 7.782839e-01	ci right 7.794837e-01	k: 1433147	n:1840000
KS ci ratio: 1.758122e-01	ci left: 2.463638e-04	ci right 2.943625e-04	k: 496	n:1840000
CILP2   1840000 perm   2000 sec   (920 perm/sec)   p_kst 2.695652e-04   p_cons 7.788842e-01   p_joint 9.809783e-04

Joint ci ratio: 9.184098e-02	ci left: 9.385933e-04	ci right 1.029467e-03	k: 1819	n:1850000
Cons ci ratio: 1.535711e-03	ci left: 7.782569e-01	ci right 7.794535e-01	k: 1440883	n:1850000
KS ci ratio: 1.752840e-01	ci left: 2.465825e-04	ci right 2.944642e-04	k: 499	n:1850000
CILP2   1850000 perm   2019 sec   (916 perm/sec)   p_kst 2.697297e-04   p_cons 7.788557e-01   p_joint 9.832432e-04

Joint ci ratio: 9.166494e-02	ci left: 9.372241e-04	ci right 1.027782e-03	k: 1826	n:1860000
Cons ci ratio: 1.531775e-03	ci left: 7.782141e-01	ci right 7.794076e-01	k: 1448589	n:1860000
KS ci ratio: 1.751090e-01	ci left: 2.457708e-04	ci right 2.934422e-04	k: 500	n:1860000
CILP2   1860000 perm   2037 sec   (913 perm/sec)   p_kst 2.688172e-04   p_cons 7.788113e-01   p_joint 9.817204e-04

Joint ci ratio: 9.144002e-02	ci left: 9.369149e-04	ci right 1.027209e-03	k: 1835	n:1870000
Cons ci ratio: 1.527693e-03	ci left: 7.782114e-01	ci right 7.794017e-01	k: 1456369	n:1870000
KS ci ratio: 1.747606e-01	ci left: 2.454792e-04	ci right 2.929893e-04	k: 502	n:1870000
CILP2   1870000 perm   2056 sec   (909 perm/sec)   p_kst 2.684492e-04   p_cons 7.788070e-01   p_joint 9.812834e-04

Joint ci ratio: 9.131588e-02	ci left: 9.345300e-04	ci right 1.024465e-03	k: 1840	n:1880000
Cons ci ratio: 1.523524e-03	ci left: 7.782358e-01	ci right 7.794229e-01	k: 1464200	n:1880000
KS ci ratio: 1.744142e-01	ci left: 2.451908e-04	ci right 2.925411e-04	k: 504	n:1880000
CILP2   1880000 perm   2075 sec   (906 perm/sec)   p_kst 2.680851e-04   p_cons 7.788298e-01   p_joint 9.787234e-04

Joint ci ratio: 1.092317e-01	ci left: 6.437502e-04	ci right 7.186400e-04	k: 1286	n:1890000
Cons ci ratio: 1.519433e-03	ci left: 7.782499e-01	ci right 7.794339e-01	k: 1472012	n:1890000
KS ci ratio: 1.740699e-01	ci left: 2.449056e-04	ci right 2.920976e-04	k: 506	n:1890000
CILP2   1890000 perm   2095 sec   (902 perm/sec)   p_kst 2.677249e-04   p_cons 7.788423e-01   p_joint 6.804233e-04

Joint ci ratio: 1.093169e-01	ci left: 6.393381e-04	ci right 7.137764e-04	k: 1284	n:1900000
Cons ci ratio: 1.515358e-03	ci left: 7.782676e-01	ci right 7.794484e-01	k: 1479831	n:1900000
KS ci ratio: 1.732178e-01	ci left: 2.461338e-04	ci right 2.933061e-04	k: 511	n:1900000
CILP2   1900000 perm   2114 sec   (899 perm/sec)   p_kst 2.689474e-04   p_cons 7.788584e-01   p_joint 6.757895e-04

Joint ci ratio: 1.103532e-01	ci left: 6.237703e-04	ci right 6.971292e-04	k: 1260	n:1910000
Cons ci ratio: 1.511541e-03	ci left: 7.782338e-01	ci right 7.794115e-01	k: 1487552	n:1910000
KS ci ratio: 1.723780e-01	ci left: 2.473498e-04	ci right 2.945013e-04	k: 516	n:1910000
CILP2   1910000 perm   2134 sec   (895 perm/sec)   p_kst 2.701571e-04   p_cons 7.788230e-01   p_joint 6.596859e-04

Joint ci ratio: 1.101787e-01	ci left: 6.225473e-04	ci right 6.956391e-04	k: 1264	n:1920000
Cons ci ratio: 1.507379e-03	ci left: 7.782857e-01	ci right 7.794603e-01	k: 1495437	n:1920000
KS ci ratio: 1.722116e-01	ci left: 2.465598e-04	ci right 2.935108e-04	k: 517	n:1920000
CILP2   1920000 perm   2154 sec   (891 perm/sec)   p_kst 2.692708e-04   p_cons 7.788734e-01   p_joint 6.583333e-04

Joint ci ratio: 1.098319e-01	ci left: 6.233527e-04	ci right 6.962938e-04	k: 1272	n:1930000
Cons ci ratio: 1.503425e-03	ci left: 7.782973e-01	ci right 7.794687e-01	k: 1503245	n:1930000
KS ci ratio: 1.712227e-01	ci left: 2.482575e-04	ci right 2.952322e-04	k: 523	n:1930000
CILP2   1930000 perm   2174 sec   (888 perm/sec)   p_kst 2.709845e-04   p_cons 7.788834e-01   p_joint 6.590674e-04

Joint ci ratio: 1.097458e-01	ci left: 6.211422e-04	ci right 6.937639e-04	k: 1274	n:1940000
Cons ci ratio: 1.499581e-03	ci left: 7.782906e-01	ci right 7.794591e-01	k: 1511018	n:1940000
KS ci ratio: 1.710596e-01	ci left: 2.474712e-04	ci right 2.942480e-04	k: 524	n:1940000
CILP2   1940000 perm   2193 sec   (885 perm/sec)   p_kst 2.701031e-04   p_cons 7.788753e-01   p_joint 6.567010e-04

Joint ci ratio: 1.091904e-01	ci left: 6.244410e-04	ci right 6.970552e-04	k: 1287	n:1950000
Cons ci ratio: 1.495759e-03	ci left: 7.782856e-01	ci right 7.794510e-01	k: 1518794	n:1950000
KS ci ratio: 1.700903e-01	ci left: 2.491477e-04	ci right 2.959471e-04	k: 530	n:1950000
CILP2   1950000 perm   2212 sec   (881 perm/sec)   p_kst 2.717949e-04   p_cons 7.788687e-01   p_joint 6.600000e-04

Joint ci ratio: 1.088949e-01	ci left: 6.247291e-04	ci right 6.971676e-04	k: 1294	n:1960000
Cons ci ratio: 1.492013e-03	ci left: 7.782698e-01	ci right 7.794324e-01	k: 1526549	n:1960000
KS ci ratio: 1.694532e-01	ci left: 2.498307e-04	ci right 2.965646e-04	k: 534	n:1960000
CILP2   1960000 perm   2232 sec   (878 perm/sec)   p_kst 2.724490e-04   p_cons 7.788515e-01   p_joint 6.602041e-04

Joint ci ratio: 1.087691e-01	ci left: 6.230393e-04	ci right 6.951930e-04	k: 1297	n:1970000
Cons ci ratio: 1.488295e-03	ci left: 7.782543e-01	ci right 7.794139e-01	k: 1534304	n:1970000
KS ci ratio: 1.694533e-01	ci left: 2.485625e-04	ci right 2.950592e-04	k: 534	n:1970000
CILP2   1970000 perm   2252 sec   (875 perm/sec)   p_kst 2.710660e-04   p_cons 7.788345e-01   p_joint 6.583756e-04

Joint ci ratio: 1.086437e-01	ci left: 6.213665e-04	ci right 6.932383e-04	k: 1300	n:1980000
Cons ci ratio: 1.484446e-03	ci left: 7.782758e-01	ci right 7.794325e-01	k: 1542132	n:1980000
KS ci ratio: 1.689802e-01	ci left: 2.487581e-04	ci right 2.951483e-04	k: 537	n:1980000
CILP2   1980000 perm   2271 sec   (872 perm/sec)   p_kst 2.712121e-04   p_cons 7.788545e-01   p_joint 6.565657e-04

Joint ci ratio: 1.083526e-01	ci left: 6.216662e-04	ci right 6.933677e-04	k: 1307	n:1990000
Cons ci ratio: 1.480829e-03	ci left: 7.782498e-01	ci right 7.794036e-01	k: 1549866	n:1990000
KS ci ratio: 1.685110e-01	ci left: 2.489520e-04	ci right 2.952363e-04	k: 540	n:1990000
CILP2   1990000 perm   2291 sec   (868 perm/sec)   p_kst 2.713568e-04   p_cons 7.788271e-01   p_joint 6.567839e-04

Joint ci ratio: 1.081874e-01	ci left: 6.205037e-04	ci right 6.919550e-04	k: 1311	n:2000000
Cons ci ratio: 1.477127e-03	ci left: 7.782501e-01	ci right 7.794010e-01	k: 1557652	n:2000000
KS ci ratio: 1.680457e-01	ci left: 2.491440e-04	ci right 2.953232e-04	k: 543	n:2000000
CILP2   2000000 perm   2311 sec   (865 perm/sec)   p_kst 2.715000e-04   p_cons 7.788260e-01   p_joint 6.555000e-04

Joint ci ratio: 1.078590e-01	ci left: 6.212892e-04	ci right 6.926000e-04	k: 1319	n:2010000
Cons ci ratio: 1.473496e-03	ci left: 7.782405e-01	ci right 7.793886e-01	k: 1565418	n:2010000
KS ci ratio: 1.677377e-01	ci left: 2.488577e-04	ci right 2.948908e-04	k: 545	n:2010000
CILP2   2010000 perm   2332 sec   (862 perm/sec)   p_kst 2.711443e-04   p_cons 7.788149e-01   p_joint 6.562189e-04

Joint ci ratio: 1.076960e-01	ci left: 6.201403e-04	ci right 6.912049e-04	k: 1323	n:2020000
Cons ci ratio: 1.469846e-03	ci left: 7.782414e-01	ci right 7.793866e-01	k: 1573205	n:2020000
KS ci ratio: 1.677378e-01	ci left: 2.476257e-04	ci right 2.934309e-04	k: 545	n:2020000
CILP2   2020000 perm   2352 sec   (859 perm/sec)   p_kst 2.698020e-04   p_cons 7.788144e-01   p_joint 6.549505e-04

Joint ci ratio: 1.076149e-01	ci left: 6.180441e-04	ci right 6.888117e-04	k: 1325	n:2030000
Cons ci ratio: 1.466184e-03	ci left: 7.782516e-01	ci right 7.793939e-01	k: 1581011	n:2030000
KS ci ratio: 1.677379e-01	ci left: 2.464059e-04	ci right 2.919855e-04	k: 545	n:2030000
CILP2   2030000 perm   2373 sec   (856 perm/sec)   p_kst 2.684729e-04   p_cons 7.788232e-01   p_joint 6.527094e-04

Joint ci ratio: 1.072113e-01	ci left: 6.197848e-04	ci right 6.904688e-04	k: 1335	n:2040000
Cons ci ratio: 1.462524e-03	ci left: 7.782676e-01	ci right 7.794071e-01	k: 1588829	n:2040000
KS ci ratio: 1.672790e-01	ci left: 2.466070e-04	ci right 2.920863e-04	k: 548	n:2040000
CILP2   2040000 perm   2393 sec   (853 perm/sec)   p_kst 2.686275e-04   p_cons 7.788377e-01   p_joint 6.544118e-04

Joint ci ratio: 1.068122e-01	ci left: 6.215089e-04	ci right 6.921092e-04	k: 1345	n:2050000
Cons ci ratio: 1.459114e-03	ci left: 7.782307e-01	ci right 7.793675e-01	k: 1596539	n:2050000
KS ci ratio: 1.663722e-01	ci left: 2.482087e-04	ci right 2.937104e-04	k: 554	n:2050000
CILP2   2050000 perm   2413 sec   (849 perm/sec)   p_kst 2.702439e-04   p_cons 7.787995e-01   p_joint 6.560976e-04

Joint ci ratio: 1.077374e-01	ci left: 6.076262e-04	ci right 6.772852e-04	k: 1322	n:2060000
Cons ci ratio: 1.455581e-03	ci left: 7.782292e-01	ci right 7.793632e-01	k: 1604321	n:2060000
KS ci ratio: 1.660732e-01	ci left: 2.479342e-04	ci right 2.932959e-04	k: 556	n:2060000
CILP2   2060000 perm   2434 sec   (846 perm/sec)   p_kst 2.699029e-04   p_cons 7.787966e-01   p_joint 6.417476e-04

Joint ci ratio: 1.081473e-01	ci left: 5.999902e-04	ci right 6.690521e-04	k: 1312	n:2070000
Cons ci ratio: 1.452270e-03	ci left: 7.781808e-01	ci right 7.793122e-01	k: 1612006	n:2070000
KS ci ratio: 1.657759e-01	ci left: 2.476626e-04	ci right 2.928853e-04	k: 558	n:2070000
CILP2   2070000 perm   2455 sec   (843 perm/sec)   p_kst 2.695652e-04   p_cons 7.787469e-01   p_joint 6.338164e-04

Joint ci ratio: 1.080652e-01	ci left: 5.980411e-04	ci right 6.668231e-04	k: 1314	n:2080000
Cons ci ratio: 1.448837e-03	ci left: 7.781675e-01	ci right 7.792962e-01	k: 1619763	n:2080000
KS ci ratio: 1.656279e-01	ci left: 2.469327e-04	ci right 2.919778e-04	k: 559	n:2080000
CILP2   2080000 perm   2476 sec   (840 perm/sec)   p_kst 2.687500e-04   p_cons 7.787322e-01   p_joint 6.317308e-04

Joint ci ratio: 1.084373e-01	ci left: 5.909899e-04	ci right 6.592099e-04	k: 1305	n:2090000
Cons ci ratio: 1.445341e-03	ci left: 7.781749e-01	ci right 7.793009e-01	k: 1627563	n:2090000
KS ci ratio: 1.650395e-01	ci left: 2.475859e-04	ci right 2.925738e-04	k: 563	n:2090000
CILP2   2090000 perm   2497 sec   (837 perm/sec)   p_kst 2.693780e-04   p_cons 7.787383e-01   p_joint 6.244019e-04

Joint ci ratio: 1.083959e-01	ci left: 5.886389e-04	ci right 6.565600e-04	k: 1306	n:2100000
Cons ci ratio: 1.441775e-03	ci left: 7.782051e-01	ci right 7.793284e-01	k: 1635411	n:2100000
KS ci ratio: 1.650396e-01	ci left: 2.464069e-04	ci right 2.911806e-04	k: 563	n:2100000
CILP2   2100000 perm   2518 sec   (834 perm/sec)   p_kst 2.680952e-04   p_cons 7.787671e-01   p_joint 6.219048e-04

Joint ci ratio: 1.081892e-01	ci left: 5.881546e-04	ci right 6.558822e-04	k: 1311	n:2110000
Cons ci ratio: 1.438249e-03	ci left: 7.782318e-01	ci right 7.793523e-01	k: 1643252	n:2110000
KS ci ratio: 1.647477e-01	ci left: 2.461478e-04	ci right 2.907876e-04	k: 565	n:2110000
CILP2   2110000 perm   2540 sec   (831 perm/sec)   p_kst 2.677725e-04   p_cons 7.787924e-01   p_joint 6.213270e-04

Joint ci ratio: 1.081070e-01	ci left: 5.862982e-04	ci right 6.537573e-04	k: 1313	n:2120000
Cons ci ratio: 1.434729e-03	ci left: 7.782629e-01	ci right 7.793807e-01	k: 1651103	n:2120000
KS ci ratio: 1.647479e-01	ci left: 2.449868e-04	ci right 2.894159e-04	k: 565	n:2120000
CILP2   2120000 perm   2561 sec   (828 perm/sec)   p_kst 2.665094e-04   p_cons 7.788222e-01   p_joint 6.193396e-04

Joint ci ratio: 1.088978e-01	ci left: 5.748673e-04	ci right 6.415261e-04	k: 1294	n:2130000
Cons ci ratio: 1.431153e-03	ci left: 7.783134e-01	ci right 7.794285e-01	k: 1658996	n:2130000
KS ci ratio: 1.644576e-01	ci left: 2.447369e-04	ci right 2.890348e-04	k: 567	n:2130000
CILP2   2130000 perm   2583 sec   (825 perm/sec)   p_kst 2.661972e-04   p_cons 7.788714e-01   p_joint 6.075117e-04

Joint ci ratio: 1.083966e-01	ci left: 5.776361e-04	ci right 6.442880e-04	k: 1306	n:2140000
Cons ci ratio: 1.427781e-03	ci left: 7.783205e-01	ci right 7.794330e-01	k: 1666797	n:2140000
KS ci ratio: 1.643131e-01	ci left: 2.440413e-04	ci right 2.881707e-04	k: 568	n:2140000
CILP2   2140000 perm   2604 sec   (822 perm/sec)   p_kst 2.654206e-04   p_cons 7.788771e-01   p_joint 6.102804e-04

Joint ci ratio: 1.082311e-01	ci left: 5.767595e-04	ci right 6.432022e-04	k: 1310	n:2150000
Cons ci ratio: 1.424622e-03	ci left: 7.782818e-01	ci right 7.793918e-01	k: 1674500	n:2150000
KS ci ratio: 1.640251e-01	ci left: 2.437982e-04	ci right 2.877988e-04	k: 570	n:2150000
CILP2   2150000 perm   2626 sec   (819 perm/sec)   p_kst 2.651163e-04   p_cons 7.788372e-01   p_joint 6.093023e-04

Joint ci ratio: 1.079433e-01	ci left: 5.772425e-04	ci right 6.435527e-04	k: 1317	n:2160000
Cons ci ratio: 1.421353e-03	ci left: 7.782751e-01	ci right 7.793825e-01	k: 1682271	n:2160000
KS ci ratio: 1.635959e-01	ci left: 2.440015e-04	ci right 2.879121e-04	k: 573	n:2160000
CILP2   2160000 perm   2647 sec   (816 perm/sec)   p_kst 2.652778e-04   p_cons 7.788292e-01   p_joint 6.097222e-04

Joint ci ratio: 1.078616e-01	ci left: 5.754791e-04	ci right 6.415336e-04	k: 1319	n:2170000
Cons ci ratio: 1.418067e-03	ci left: 7.782781e-01	ci right 7.793829e-01	k: 1690063	n:2170000
KS ci ratio: 1.635960e-01	ci left: 2.428770e-04	ci right 2.865854e-04	k: 573	n:2170000
CILP2   2170000 perm   2669 sec   (813 perm/sec)   p_kst 2.640553e-04   p_cons 7.788309e-01   p_joint 6.078341e-04

Joint ci ratio: 1.077393e-01	ci left: 5.741783e-04	ci right 6.400041e-04	k: 1322	n:2180000
Cons ci ratio: 1.414844e-03	ci left: 7.782714e-01	ci right 7.793737e-01	k: 1697834	n:2180000
KS ci ratio: 1.634537e-01	ci left: 2.422029e-04	ci right 2.857482e-04	k: 574	n:2180000
CILP2   2180000 perm   2691 sec   (810 perm/sec)   p_kst 2.633028e-04   p_cons 7.788229e-01   p_joint 6.064220e-04

Joint ci ratio: 1.072941e-01	ci left: 5.764443e-04	ci right 6.422395e-04	k: 1333	n:2190000
Cons ci ratio: 1.411764e-03	ci left: 7.782351e-01	ci right 7.793350e-01	k: 1705540	n:2190000
KS ci ratio: 1.630289e-01	ci left: 2.424108e-04	ci right 2.858692e-04	k: 577	n:2190000
CILP2   2190000 perm   2714 sec   (807 perm/sec)   p_kst 2.634703e-04   p_cons 7.787854e-01   p_joint 6.086758e-04

Joint ci ratio: 1.070936e-01	ci left: 5.760359e-04	ci right 6.416538e-04	k: 1338	n:2200000
Cons ci ratio: 1.408405e-03	ci left: 7.782723e-01	ci right 7.793697e-01	k: 1713407	n:2200000
KS ci ratio: 1.628882e-01	ci left: 2.417450e-04	ci right 2.850429e-04	k: 578	n:2200000
CILP2   2200000 perm   2736 sec   (804 perm/sec)   p_kst 2.627273e-04   p_cons 7.788214e-01   p_joint 6.081818e-04

Joint ci ratio: 9.568737e-02	ci left: 7.225071e-04	ci right 7.955534e-04	k: 1676	n:2210000
Cons ci ratio: 1.405209e-03	ci left: 7.782748e-01	ci right 7.793697e-01	k: 1721198	n:2210000
KS ci ratio: 1.621893e-01	ci left: 2.428215e-04	ci right 2.861075e-04	k: 583	n:2210000
CILP2   2210000 perm   2759 sec   (801 perm/sec)   p_kst 2.638009e-04   p_cons 7.788226e-01   p_joint 7.583710e-04

Joint ci ratio: 9.545994e-02	ci left: 7.227700e-04	ci right 7.956596e-04	k: 1684	n:2220000
Cons ci ratio: 1.402019e-03	ci left: 7.782814e-01	ci right 7.793737e-01	k: 1728998	n:2220000
KS ci ratio: 1.617743e-01	ci left: 2.430243e-04	ci right 2.862248e-04	k: 586	n:2220000
CILP2   2220000 perm   2781 sec   (798 perm/sec)   p_kst 2.639640e-04   p_cons 7.788279e-01   p_joint 7.585586e-04

Joint ci ratio: 9.643876e-02	ci left: 7.046478e-04	ci right 7.764796e-04	k: 1650	n:2230000
Cons ci ratio: 1.398729e-03	ci left: 7.783179e-01	ci right 7.794078e-01	k: 1736865	n:2230000
KS ci ratio: 1.613625e-01	ci left: 2.432254e-04	ci right 2.863409e-04	k: 589	n:2230000
CILP2   2230000 perm   2803 sec   (796 perm/sec)   p_kst 2.641256e-04   p_cons 7.788632e-01   p_joint 7.399103e-04

Joint ci ratio: 9.623497e-02	ci left: 7.045518e-04	ci right 7.762134e-04	k: 1657	n:2240000
Cons ci ratio: 1.395669e-03	ci left: 7.783028e-01	ci right 7.793902e-01	k: 1744617	n:2240000
KS ci ratio: 1.610897e-01	ci left: 2.429964e-04	ci right 2.859915e-04	k: 591	n:2240000
CILP2   2240000 perm   2826 sec   (793 perm/sec)   p_kst 2.638393e-04   p_cons 7.788469e-01   p_joint 7.397321e-04

Joint ci ratio: 9.603247e-02	ci left: 7.044567e-04	ci right 7.759495e-04	k: 1664	n:2250000
Cons ci ratio: 1.392463e-03	ci left: 7.783292e-01	ci right 7.794141e-01	k: 1752462	n:2250000
KS ci ratio: 1.609539e-01	ci left: 2.423430e-04	ci right 2.851827e-04	k: 592	n:2250000
CILP2   2250000 perm   2848 sec   (790 perm/sec)   p_kst 2.631111e-04   p_cons 7.788720e-01   p_joint 7.395556e-04

Joint ci ratio: 9.702915e-02	ci left: 6.866583e-04	ci right 7.571091e-04	k: 1630	n:2260000
Cons ci ratio: 1.389437e-03	ci left: 7.783159e-01	ci right 7.793985e-01	k: 1760218	n:2260000
KS ci ratio: 1.605482e-01	ci left: 2.425447e-04	ci right 2.853016e-04	k: 595	n:2260000
CILP2   2260000 perm   2870 sec   (787 perm/sec)   p_kst 2.632743e-04   p_cons 7.788575e-01   p_joint 7.212389e-04

Joint ci ratio: 9.685119e-02	ci left: 6.862124e-04	ci right 7.564811e-04	k: 1636	n:2270000
Cons ci ratio: 1.386376e-03	ci left: 7.783164e-01	ci right 7.793966e-01	k: 1768005	n:2270000
KS ci ratio: 1.600121e-01	ci left: 2.431677e-04	ci right 2.858775e-04	k: 599	n:2270000
CILP2   2270000 perm   2893 sec   (785 perm/sec)   p_kst 2.638767e-04   p_cons 7.788568e-01   p_joint 7.207048e-04

Joint ci ratio: 9.664479e-02	ci left: 6.861986e-04	ci right 7.563076e-04	k: 1643	n:2280000
Cons ci ratio: 1.383439e-03	ci left: 7.782910e-01	ci right 7.793689e-01	k: 1775733	n:2280000
KS ci ratio: 1.594814e-01	ci left: 2.437854e-04	ci right 2.864481e-04	k: 603	n:2280000
CILP2   2280000 perm   2915 sec   (782 perm/sec)   p_kst 2.644737e-04   p_cons 7.788303e-01   p_joint 7.206140e-04

Joint ci ratio: 9.652750e-02	ci left: 6.849066e-04	ci right 7.547939e-04	k: 1647	n:2290000
Cons ci ratio: 1.380369e-03	ci left: 7.783038e-01	ci right 7.793793e-01	k: 1783548	n:2290000
KS ci ratio: 1.590868e-01	ci left: 2.439786e-04	ci right 2.865595e-04	k: 606	n:2290000
CILP2   2290000 perm   2938 sec   (779 perm/sec)   p_kst 2.646288e-04   p_cons 7.788419e-01   p_joint 7.192140e-04

Joint ci ratio: 9.667452e-02	ci left: 6.798073e-04	ci right 7.492858e-04	k: 1642	n:2300000
Cons ci ratio: 1.377355e-03	ci left: 7.783074e-01	ci right 7.793806e-01	k: 1791342	n:2300000
KS ci ratio: 1.584355e-01	ci left: 2.450054e-04	ci right 2.875738e-04	k: 611	n:2300000
CILP2   2300000 perm   2962 sec   (777 perm/sec)   p_kst 2.656522e-04   p_cons 7.788443e-01   p_joint 7.139130e-04

Joint ci ratio: 9.723895e-02	ci left: 6.688386e-04	ci right 7.376179e-04	k: 1623	n:2310000
Cons ci ratio: 1.374304e-03	ci left: 7.783253e-01	ci right 7.793961e-01	k: 1799169	n:2310000
KS ci ratio: 1.581773e-01	ci left: 2.447763e-04	ci right 2.872289e-04	k: 613	n:2310000
CILP2   2310000 perm   2985 sec   (774 perm/sec)   p_kst 2.653680e-04   p_cons 7.788610e-01   p_joint 7.025974e-04

Joint ci ratio: 9.705984e-02	ci left: 6.684790e-04	ci right 7.370875e-04	k: 1629	n:2320000
Cons ci ratio: 1.371311e-03	ci left: 7.783335e-01	ci right 7.794020e-01	k: 1806974	n:2320000
KS ci ratio: 1.580487e-01	ci left: 2.441352e-04	ci right 2.864390e-04	k: 614	n:2320000
CILP2   2320000 perm   3008 sec   (771 perm/sec)   p_kst 2.646552e-04   p_cons 7.788681e-01   p_joint 7.021552e-04

Joint ci ratio: 1.004800e-01	ci left: 6.199833e-04	ci right 6.859890e-04	k: 1520	n:2330000
Cons ci ratio: 1.368332e-03	ci left: 7.783430e-01	ci right 7.794091e-01	k: 1814782	n:2330000
KS ci ratio: 1.577923e-01	ci left: 2.439119e-04	ci right 2.861019e-04	k: 616	n:2330000
CILP2   2330000 perm   3032 sec   (768 perm/sec)   p_kst 2.643777e-04   p_cons 7.788764e-01   p_joint 6.523605e-04

Joint ci ratio: 1.001512e-01	ci left: 6.215001e-04	ci right 6.874381e-04	k: 1530	n:2340000
Cons ci ratio: 1.365274e-03	ci left: 7.783771e-01	ci right 7.794410e-01	k: 1822648	n:2340000
KS ci ratio: 1.574101e-01	ci left: 2.441010e-04	ci right 2.862118e-04	k: 619	n:2340000
CILP2   2340000 perm   3055 sec   (766 perm/sec)   p_kst 2.645299e-04   p_cons 7.789094e-01   p_joint 6.538462e-04

Joint ci ratio: 9.995556e-02	ci left: 6.213448e-04	ci right 6.871299e-04	k: 1536	n:2350000
Cons ci ratio: 1.362418e-03	ci left: 7.783650e-01	ci right 7.794266e-01	k: 1830406	n:2350000
KS ci ratio: 1.572834e-01	ci left: 2.434710e-04	ci right 2.854361e-04	k: 620	n:2350000
CILP2   2350000 perm   3077 sec   (764 perm/sec)   p_kst 2.638298e-04   p_cons 7.788962e-01   p_joint 6.536170e-04

Joint ci ratio: 9.985823e-02	ci left: 6.199513e-04	ci right 6.855213e-04	k: 1539	n:2360000
Cons ci ratio: 1.359539e-03	ci left: 7.783636e-01	ci right 7.794230e-01	k: 1838189	n:2360000
KS ci ratio: 1.571569e-01	ci left: 2.428464e-04	ci right 2.846671e-04	k: 621	n:2360000
CILP2   2360000 perm   3101 sec   (761 perm/sec)   p_kst 2.631356e-04   p_cons 7.788936e-01   p_joint 6.521186e-04

Joint ci ratio: 1.006130e-01	ci left: 6.078740e-04	ci right 6.726812e-04	k: 1516	n:2370000
Cons ci ratio: 1.356619e-03	ci left: 7.783770e-01	ci right 7.794341e-01	k: 1846007	n:2370000
KS ci ratio: 1.565290e-01	ci left: 2.438487e-04	ci right 2.856584e-04	k: 626	n:2370000
CILP2   2370000 perm   3125 sec   (759 perm/sec)   p_kst 2.641350e-04   p_cons 7.789059e-01   p_joint 6.396624e-04

Joint ci ratio: 1.002829e-01	ci left: 6.094160e-04	ci right 6.741620e-04	k: 1526	n:2380000
Cons ci ratio: 1.353742e-03	ci left: 7.783844e-01	ci right 7.794393e-01	k: 1853811	n:2380000
KS ci ratio: 1.560320e-01	ci left: 2.444391e-04	ci right 2.862045e-04	k: 630	n:2380000
CILP2   2380000 perm   3148 sec   (756 perm/sec)   p_kst 2.647059e-04   p_cons 7.789122e-01   p_joint 6.411765e-04

Joint ci ratio: 8.528055e-02	ci left: 8.455890e-04	ci right 9.213191e-04	k: 2110	n:2390000
Cons ci ratio: 1.350966e-03	ci left: 7.783704e-01	ci right 7.794231e-01	k: 1861564	n:2390000
KS ci ratio: 1.557853e-01	ci left: 2.442205e-04	ci right 2.858764e-04	k: 632	n:2390000
CILP2   2390000 perm   3171 sec   (754 perm/sec)   p_kst 2.644351e-04   p_cons 7.788971e-01   p_joint 8.828452e-04

Joint ci ratio: 8.574953e-02	ci left: 8.326871e-04	ci right 9.076924e-04	k: 2087	n:2400000
Cons ci ratio: 1.348264e-03	ci left: 7.783419e-01	ci right 7.793924e-01	k: 1869282	n:2400000
KS ci ratio: 1.555398e-01	ci left: 2.440038e-04	ci right 2.855510e-04	k: 634	n:2400000
CILP2   2400000 perm   3195 sec   (751 perm/sec)   p_kst 2.641667e-04   p_cons 7.788675e-01   p_joint 8.695833e-04

Joint ci ratio: 8.558574e-02	ci left: 8.324803e-04	ci right 9.073166e-04	k: 2095	n:2410000
Cons ci ratio: 1.345583e-03	ci left: 7.783124e-01	ci right 7.793608e-01	k: 1876997	n:2410000
KS ci ratio: 1.554176e-01	ci left: 2.433901e-04	ci right 2.847972e-04	k: 635	n:2410000
CILP2   2410000 perm   3218 sec   (749 perm/sec)   p_kst 2.634855e-04   p_cons 7.788369e-01   p_joint 8.692946e-04

Joint ci ratio: 8.548390e-02	ci left: 8.310622e-04	ci right 9.056777e-04	k: 2100	n:2420000
Cons ci ratio: 1.342777e-03	ci left: 7.783195e-01	ci right 7.793657e-01	k: 1884800	n:2420000
KS ci ratio: 1.554177e-01	ci left: 2.423843e-04	ci right 2.836204e-04	k: 635	n:2420000
CILP2   2420000 perm   3242 sec   (746 perm/sec)   p_kst 2.623967e-04   p_cons 7.788430e-01   p_joint 8.677686e-04

Joint ci ratio: 8.542304e-02	ci left: 8.288504e-04	ci right 9.032116e-04	k: 2103	n:2430000
Cons ci ratio: 1.339996e-03	ci left: 7.783246e-01	ci right 7.793686e-01	k: 1892598	n:2430000
KS ci ratio: 1.552957e-01	ci left: 2.417824e-04	ci right 2.828807e-04	k: 636	n:2430000
CILP2   2430000 perm   3267 sec   (744 perm/sec)   p_kst 2.617284e-04   p_cons 7.788469e-01   p_joint 8.654321e-04

Joint ci ratio: 8.528132e-02	ci left: 8.282610e-04	ci right 9.024400e-04	k: 2110	n:2440000
Cons ci ratio: 1.337375e-03	ci left: 7.782926e-01	ci right 7.793346e-01	k: 1900306	n:2440000
KS ci ratio: 1.549313e-01	ci left: 2.419733e-04	ci right 2.829986e-04	k: 639	n:2440000
CILP2   2440000 perm   3291 sec   (741 perm/sec)   p_kst 2.618852e-04   p_cons 7.788139e-01   p_joint 8.647541e-04

Joint ci ratio: 8.512019e-02	ci left: 8.280761e-04	ci right 9.020914e-04	k: 2118	n:2450000
Cons ci ratio: 1.334616e-03	ci left: 7.783006e-01	ci right 7.793404e-01	k: 1908111	n:2450000
KS ci ratio: 1.545694e-01	ci left: 2.421627e-04	ci right 2.831154e-04	k: 642	n:2450000
CILP2   2450000 perm   3315 sec   (739 perm/sec)   p_kst 2.620408e-04   p_cons 7.788208e-01   p_joint 8.644898e-04

Joint ci ratio: 8.488014e-02	ci left: 8.294843e-04	ci right 9.034061e-04	k: 2130	n:2460000
Cons ci ratio: 1.331933e-03	ci left: 7.782934e-01	ci right 7.793311e-01	k: 1915879	n:2460000
KS ci ratio: 1.539718e-01	ci left: 2.431324e-04	ci right 2.840754e-04	k: 647	n:2460000
CILP2   2460000 perm   3340 sec   (737 perm/sec)   p_kst 2.630081e-04   p_cons 7.788126e-01   p_joint 8.658537e-04

Joint ci ratio: 8.458286e-02	ci left: 8.320703e-04	ci right 9.059500e-04	k: 2145	n:2470000
Cons ci ratio: 1.329281e-03	ci left: 7.782823e-01	ci right 7.793179e-01	k: 1923637	n:2470000
KS ci ratio: 1.534988e-01	ci left: 2.437052e-04	ci right 2.846070e-04	k: 651	n:2470000
CILP2   2470000 perm   3364 sec   (734 perm/sec)   p_kst 2.635628e-04   p_cons 7.788004e-01   p_joint 8.684211e-04

Joint ci ratio: 8.436687e-02	ci left: 8.330570e-04	ci right 9.068262e-04	k: 2156	n:2480000
Cons ci ratio: 1.326593e-03	ci left: 7.782845e-01	ci right 7.793181e-01	k: 1931428	n:2480000
KS ci ratio: 1.530300e-01	ci left: 2.442735e-04	ci right 2.851341e-04	k: 655	n:2480000
CILP2   2480000 perm   3389 sec   (732 perm/sec)   p_kst 2.641129e-04   p_cons 7.788016e-01   p_joint 8.693548e-04

Joint ci ratio: 8.415253e-02	ci left: 8.340360e-04	ci right 9.076950e-04	k: 2167	n:2490000
Cons ci ratio: 1.324069e-03	ci left: 7.782486e-01	ci right 7.792801e-01	k: 1939124	n:2490000
KS ci ratio: 1.529136e-01	ci left: 2.436787e-04	ci right 2.844059e-04	k: 656	n:2490000
CILP2   2490000 perm   3414 sec   (729 perm/sec)   p_kst 2.634538e-04   p_cons 7.787647e-01   p_joint 8.702811e-04

Joint ci ratio: 8.403637e-02	ci left: 8.330494e-04	ci right 9.065147e-04	k: 2173	n:2500000
Cons ci ratio: 1.321419e-03	ci left: 7.782493e-01	ci right 7.792788e-01	k: 1946911	n:2500000
KS ci ratio: 1.526814e-01	ci left: 2.434734e-04	ci right 2.840989e-04	k: 658	n:2500000
CILP2   2500000 perm   3439 sec   (727 perm/sec)   p_kst 2.632000e-04   p_cons 7.787644e-01   p_joint 8.692000e-04

Joint ci ratio: 8.462292e-02	ci left: 8.180301e-04	ci right 8.906992e-04	k: 2143	n:2510000
Cons ci ratio: 1.318787e-03	ci left: 7.782497e-01	ci right 7.792771e-01	k: 1954697	n:2510000
KS ci ratio: 1.523350e-01	ci left: 2.436530e-04	ci right 2.842078e-04	k: 661	n:2510000
CILP2   2510000 perm   3464 sec   (725 perm/sec)   p_kst 2.633466e-04   p_cons 7.787637e-01   p_joint 8.537849e-04

Joint ci ratio: 8.470218e-02	ci left: 8.132301e-04	ci right 8.855439e-04	k: 2139	n:2520000
Cons ci ratio: 1.316088e-03	ci left: 7.782715e-01	ci right 7.792969e-01	k: 1962537	n:2520000
KS ci ratio: 1.521054e-01	ci left: 2.434496e-04	ci right 2.839038e-04	k: 663	n:2520000
CILP2   2520000 perm   3489 sec   (722 perm/sec)   p_kst 2.630952e-04   p_cons 7.787845e-01   p_joint 8.488095e-04

Joint ci ratio: 8.450495e-02	ci left: 8.138847e-04	ci right 8.860799e-04	k: 2149	n:2530000
Cons ci ratio: 1.313484e-03	ci left: 7.782726e-01	ci right 7.792959e-01	k: 1970325	n:2530000
KS ci ratio: 1.516493e-01	ci left: 2.440083e-04	ci right 2.844227e-04	k: 667	n:2530000
CILP2   2530000 perm   3514 sec   (720 perm/sec)   p_kst 2.636364e-04   p_cons 7.787846e-01   p_joint 8.494071e-04

Joint ci ratio: 8.436774e-02	ci left: 8.133782e-04	ci right 8.854055e-04	k: 2156	n:2540000
Cons ci ratio: 1.310809e-03	ci left: 7.782965e-01	ci right 7.793178e-01	k: 1978171	n:2540000
KS ci ratio: 1.511972e-01	ci left: 2.445628e-04	ci right 2.849374e-04	k: 671	n:2540000
CILP2   2540000 perm   3540 sec   (718 perm/sec)   p_kst 2.641732e-04   p_cons 7.788075e-01   p_joint 8.488189e-04

Joint ci ratio: 8.419227e-02	ci left: 8.136435e-04	ci right 8.855371e-04	k: 2165	n:2550000
Cons ci ratio: 1.308294e-03	ci left: 7.782822e-01	ci right 7.793015e-01	k: 1985920	n:2550000
KS ci ratio: 1.505266e-01	ci left: 2.458678e-04	ci right 2.862617e-04	k: 677	n:2550000
CILP2   2550000 perm   3564 sec   (715 perm/sec)   p_kst 2.654902e-04   p_cons 7.787922e-01   p_joint 8.490196e-04

Joint ci ratio: 8.405658e-02	ci left: 8.131420e-04	ci right 8.848698e-04	k: 2172	n:2560000
Cons ci ratio: 1.305784e-03	ci left: 7.782707e-01	ci right 7.792880e-01	k: 1993676	n:2560000
KS ci ratio: 1.504158e-01	ci left: 2.452833e-04	ci right 2.855488e-04	k: 678	n:2560000
CILP2   2560000 perm   3591 sec   (713 perm/sec)   p_kst 2.648437e-04   p_cons 7.787797e-01   p_joint 8.484375e-04

Joint ci ratio: 8.392154e-02	ci left: 8.126446e-04	ci right 8.842077e-04	k: 2179	n:2570000
Cons ci ratio: 1.303213e-03	ci left: 7.782792e-01	ci right 7.792945e-01	k: 2001483	n:2570000
KS ci ratio: 1.504159e-01	ci left: 2.443289e-04	ci right 2.844377e-04	k: 678	n:2570000
CILP2   2570000 perm   3617 sec   (711 perm/sec)   p_kst 2.638132e-04   p_cons 7.787872e-01   p_joint 8.478599e-04

Joint ci ratio: 8.380633e-02	ci left: 8.117716e-04	ci right 8.831549e-04	k: 2185	n:2580000
Cons ci ratio: 1.300692e-03	ci left: 7.782783e-01	ci right 7.792916e-01	k: 2009266	n:2580000
KS ci ratio: 1.501949e-01	ci left: 2.441279e-04	ci right 2.841396e-04	k: 680	n:2580000
CILP2   2580000 perm   3643 sec   (708 perm/sec)   p_kst 2.635659e-04   p_cons 7.787853e-01   p_joint 8.468992e-04

Joint ci ratio: 8.363434e-02	ci left: 8.120395e-04	ci right 8.832927e-04	k: 2194	n:2590000
Cons ci ratio: 1.298161e-03	ci left: 7.782840e-01	ci right 7.792953e-01	k: 2017066	n:2590000
KS ci ratio: 1.498651e-01	ci left: 2.443002e-04	ci right 2.842443e-04	k: 683	n:2590000
CILP2   2590000 perm   3669 sec   (706 perm/sec)   p_kst 2.637066e-04   p_cons 7.787900e-01   p_joint 8.471042e-04

Joint ci ratio: 8.608312e-02	ci left: 7.626114e-04	ci right 8.315852e-04	k: 2071	n:2600000
Cons ci ratio: 1.295461e-03	ci left: 7.783385e-01	ci right 7.793478e-01	k: 2024993	n:2600000
KS ci ratio: 1.497557e-01	ci left: 2.437307e-04	ci right 2.835500e-04	k: 684	n:2600000
CILP2   2600000 perm   3695 sec   (704 perm/sec)   p_kst 2.630769e-04   p_cons 7.788435e-01   p_joint 7.965385e-04

Joint ci ratio: 8.595878e-02	ci left: 7.619389e-04	ci right 8.307473e-04	k: 2077	n:2610000
Cons ci ratio: 1.293042e-03	ci left: 7.783220e-01	ci right 7.793295e-01	k: 2032736	n:2610000
KS ci ratio: 1.496466e-01	ci left: 2.431657e-04	ci right 2.828611e-04	k: 685	n:2610000
CILP2   2610000 perm   3720 sec   (702 perm/sec)   p_kst 2.624521e-04   p_cons 7.788261e-01   p_joint 7.957854e-04

Joint ci ratio: 8.587623e-02	ci left: 7.605246e-04	ci right 8.291361e-04	k: 2081	n:2620000
Cons ci ratio: 1.290564e-03	ci left: 7.783252e-01	ci right 7.793307e-01	k: 2040530	n:2620000
KS ci ratio: 1.494289e-01	ci left: 2.429724e-04	ci right 2.825734e-04	k: 687	n:2620000
CILP2   2620000 perm   3745 sec   (700 perm/sec)   p_kst 2.622137e-04   p_cons 7.788282e-01   p_joint 7.942748e-04

Joint ci ratio: 8.600047e-02	ci left: 7.554005e-04	ci right 8.236532e-04	k: 2075	n:2630000
Cons ci ratio: 1.288121e-03	ci left: 7.783226e-01	ci right 7.793262e-01	k: 2048309	n:2630000
KS ci ratio: 1.491042e-01	ci left: 2.431466e-04	ci right 2.826822e-04	k: 690	n:2630000
CILP2   2630000 perm   3772 sec   (697 perm/sec)   p_kst 2.623574e-04   p_cons 7.788247e-01   p_joint 7.889734e-04

Joint ci ratio: 8.579405e-02	ci left: 7.562456e-04	ci right 8.244025e-04	k: 2085	n:2640000
Cons ci ratio: 1.285679e-03	ci left: 7.783235e-01	ci right 7.793252e-01	k: 2056097	n:2640000
KS ci ratio: 1.488889e-01	ci left: 2.429549e-04	ci right 2.823973e-04	k: 692	n:2640000
CILP2   2640000 perm   3798 sec   (695 perm/sec)   p_kst 2.621212e-04   p_cons 7.788246e-01   p_joint 7.897727e-04

Joint ci ratio: 8.571198e-02	ci left: 7.548689e-04	ci right 8.228334e-04	k: 2089	n:2650000
Cons ci ratio: 1.283253e-03	ci left: 7.783240e-01	ci right 7.793237e-01	k: 2063884	n:2650000
KS ci ratio: 1.487817e-01	ci left: 2.424014e-04	ci right 2.817230e-04	k: 693	n:2650000
CILP2   2650000 perm   3825 sec   (693 perm/sec)   p_kst 2.615094e-04   p_cons 7.788242e-01   p_joint 7.883019e-04

Joint ci ratio: 8.546690e-02	ci left: 7.564458e-04	ci right 8.243478e-04	k: 2101	n:2660000
Cons ci ratio: 1.280729e-03	ci left: 7.783545e-01	ci right 7.793524e-01	k: 2071751	n:2660000
KS ci ratio: 1.483547e-01	ci left: 2.429380e-04	ci right 2.822235e-04	k: 697	n:2660000
CILP2   2660000 perm   3851 sec   (691 perm/sec)   p_kst 2.620301e-04   p_cons 7.788538e-01   p_joint 7.898496e-04

Joint ci ratio: 8.600098e-02	ci left: 7.440834e-04	ci right 8.113140e-04	k: 2075	n:2670000
Cons ci ratio: 1.278195e-03	ci left: 7.783912e-01	ci right 7.793872e-01	k: 2079635	n:2670000
KS ci ratio: 1.476162e-01	ci left: 2.445528e-04	ci right 2.838852e-04	k: 704	n:2670000
CILP2   2670000 perm   3877 sec   (689 perm/sec)   p_kst 2.636704e-04   p_cons 7.788895e-01   p_joint 7.771536e-04

Joint ci ratio: 8.641871e-02	ci left: 7.340050e-04	ci right 8.006634e-04	k: 2055	n:2680000
Cons ci ratio: 1.275805e-03	ci left: 7.783930e-01	ci right 7.793870e-01	k: 2087426	n:2680000
KS ci ratio: 1.475117e-01	ci left: 2.439996e-04	ci right 2.832129e-04	k: 705	n:2680000
CILP2   2680000 perm   3904 sec   (687 perm/sec)   p_kst 2.630597e-04   p_cons 7.788903e-01   p_joint 7.667910e-04

Joint ci ratio: 8.627198e-02	ci left: 7.338224e-04	ci right 8.003454e-04	k: 2062	n:2690000
Cons ci ratio: 1.273362e-03	ci left: 7.784129e-01	ci right 7.794051e-01	k: 2095266	n:2690000
KS ci ratio: 1.473032e-01	ci left: 2.438086e-04	ci right 2.829309e-04	k: 707	n:2690000
CILP2   2690000 perm   3930 sec   (684 perm/sec)   p_kst 2.628253e-04   p_cons 7.789093e-01   p_joint 7.665428e-04

Joint ci ratio: 8.629304e-02	ci left: 7.307421e-04	ci right 7.970028e-04	k: 2061	n:2700000
Cons ci ratio: 1.270911e-03	ci left: 7.784383e-01	ci right 7.794286e-01	k: 2103121	n:2700000
KS ci ratio: 1.467857e-01	ci left: 2.446894e-04	ci right 2.838030e-04	k: 712	n:2700000
CILP2   2700000 perm   3957 sec   (682 perm/sec)   p_kst 2.637037e-04   p_cons 7.789337e-01   p_joint 7.633333e-04

Joint ci ratio: 8.729451e-02	ci left: 7.110786e-04	ci right 7.763427e-04	k: 2014	n:2710000
Cons ci ratio: 1.268552e-03	ci left: 7.784424e-01	ci right 7.794308e-01	k: 2110919	n:2710000
KS ci ratio: 1.466830e-01	ci left: 2.441419e-04	ci right 2.831383e-04	k: 713	n:2710000
CILP2   2710000 perm   3985 sec   (680 perm/sec)   p_kst 2.630996e-04   p_cons 7.789369e-01   p_joint 7.431734e-04

Joint ci ratio: 8.716486e-02	ci left: 7.106221e-04	ci right 7.757425e-04	k: 2020	n:2720000
Cons ci ratio: 1.266219e-03	ci left: 7.784431e-01	ci right 7.794298e-01	k: 2118708	n:2720000
KS ci ratio: 1.461720e-01	ci left: 2.450152e-04	ci right 2.840028e-04	k: 718	n:2720000
CILP2   2720000 perm   4012 sec   (678 perm/sec)   p_kst 2.639706e-04   p_cons 7.789368e-01   p_joint 7.426471e-04

Joint ci ratio: 8.779763e-02	ci left: 6.976286e-04	ci right 7.620461e-04	k: 1991	n:2730000
Cons ci ratio: 1.263840e-03	ci left: 7.784597e-01	ci right 7.794445e-01	k: 2126540	n:2730000
KS ci ratio: 1.459691e-01	ci left: 2.448236e-04	ci right 2.837219e-04	k: 720	n:2730000
CILP2   2730000 perm   4040 sec   (676 perm/sec)   p_kst 2.637363e-04   p_cons 7.789524e-01   p_joint 7.293040e-04

Joint ci ratio: 8.768769e-02	ci left: 6.968672e-04	ci right 7.611298e-04	k: 1996	n:2740000
Cons ci ratio: 1.261534e-03	ci left: 7.784600e-01	ci right 7.794430e-01	k: 2134328	n:2740000
KS ci ratio: 1.457671e-01	ci left: 2.446333e-04	ci right 2.834430e-04	k: 722	n:2740000
CILP2   2740000 perm   4067 sec   (674 perm/sec)   p_kst 2.635036e-04   p_cons 7.789518e-01   p_joint 7.284672e-04

Joint ci ratio: 8.746892e-02	ci left: 6.978899e-04	ci right 7.620780e-04	k: 2006	n:2750000
Cons ci ratio: 1.259215e-03	ci left: 7.784673e-01	ci right 7.794485e-01	k: 2142135	n:2750000
KS ci ratio: 1.453655e-01	ci left: 2.451453e-04	ci right 2.839197e-04	k: 726	n:2750000
CILP2   2750000 perm   4094 sec   (672 perm/sec)   p_kst 2.640000e-04   p_cons 7.789582e-01   p_joint 7.294545e-04

Joint ci ratio: 8.727343e-02	ci left: 6.985510e-04	ci right 7.626490e-04	k: 2015	n:2760000
Cons ci ratio: 1.256921e-03	ci left: 7.784712e-01	ci right 7.794507e-01	k: 2149933	n:2760000
KS ci ratio: 1.453656e-01	ci left: 2.442571e-04	ci right 2.828911e-04	k: 726	n:2760000
CILP2   2760000 perm   4122 sec   (670 perm/sec)   p_kst 2.630435e-04   p_cons 7.789612e-01   p_joint 7.300725e-04

Joint ci ratio: 8.707925e-02	ci left: 6.992074e-04	ci right 7.632156e-04	k: 2024	n:2770000
Cons ci ratio: 1.254666e-03	ci left: 7.784676e-01	ci right 7.794452e-01	k: 2157710	n:2770000
KS ci ratio: 1.448682e-01	ci left: 2.451148e-04	ci right 2.837403e-04	k: 731	n:2770000
CILP2   2770000 perm   4149 sec   (668 perm/sec)   p_kst 2.638989e-04   p_cons 7.789567e-01   p_joint 7.306859e-04

Joint ci ratio: 8.690774e-02	ci left: 6.995074e-04	ci right 7.634105e-04	k: 2032	n:2780000
Cons ci ratio: 1.252408e-03	ci left: 7.784682e-01	ci right 7.794441e-01	k: 2165499	n:2780000
KS ci ratio: 1.447694e-01	ci left: 2.445798e-04	ci right 2.830924e-04	k: 732	n:2780000
CILP2   2780000 perm   4176 sec   (666 perm/sec)   p_kst 2.633094e-04   p_cons 7.789565e-01   p_joint 7.309353e-04

Joint ci ratio: 8.677980e-02	ci left: 6.991040e-04	ci right 7.628715e-04	k: 2038	n:2790000
Cons ci ratio: 1.250199e-03	ci left: 7.784589e-01	ci right 7.794330e-01	k: 2173260	n:2790000
KS ci ratio: 1.444740e-01	ci left: 2.447395e-04	ci right 2.831919e-04	k: 735	n:2790000
CILP2   2790000 perm   4204 sec   (664 perm/sec)   p_kst 2.634409e-04   p_cons 7.789462e-01   p_joint 7.304659e-04

Joint ci ratio: 8.669485e-02	ci left: 6.980048e-04	ci right 7.616065e-04	k: 2042	n:2800000
Cons ci ratio: 1.247994e-03	ci left: 7.784517e-01	ci right 7.794242e-01	k: 2181027	n:2800000
KS ci ratio: 1.443760e-01	ci left: 2.442097e-04	ci right 2.825505e-04	k: 736	n:2800000
CILP2   2800000 perm   4231 sec   (662 perm/sec)   p_kst 2.628571e-04   p_cons 7.789382e-01   p_joint 7.292857e-04

Joint ci ratio: 8.652560e-02	ci left: 6.983061e-04	ci right 7.618048e-04	k: 2050	n:2810000
Cons ci ratio: 1.245854e-03	ci left: 7.784296e-01	ci right 7.794004e-01	k: 2188752	n:2810000
KS ci ratio: 1.439858e-01	ci left: 2.447128e-04	ci right 2.830198e-04	k: 740	n:2810000
CILP2   2810000 perm   4258 sec   (660 perm/sec)   p_kst 2.633452e-04   p_cons 7.789153e-01   p_joint 7.295374e-04

Joint ci ratio: 8.644140e-02	ci left: 6.972176e-04	ci right 7.605525e-04	k: 2054	n:2820000
Cons ci ratio: 1.243575e-03	ci left: 7.784493e-01	ci right 7.794183e-01	k: 2196594	n:2820000
KS ci ratio: 1.439859e-01	ci left: 2.438450e-04	ci right 2.820162e-04	k: 740	n:2820000
CILP2   2820000 perm   4286 sec   (658 perm/sec)   p_kst 2.624113e-04   p_cons 7.789340e-01   p_joint 7.283688e-04

Joint ci ratio: 8.629455e-02	ci left: 6.971740e-04	ci right 7.603920e-04	k: 2061	n:2830000
Cons ci ratio: 1.241456e-03	ci left: 7.784281e-01	ci right 7.793954e-01	k: 2204321	n:2830000
KS ci ratio: 1.436953e-01	ci left: 2.440053e-04	ci right 2.821179e-04	k: 743	n:2830000
CILP2   2830000 perm   4314 sec   (656 perm/sec)   p_kst 2.625442e-04   p_cons 7.789120e-01   p_joint 7.282686e-04

Joint ci ratio: 8.614845e-02	ci left: 6.971308e-04	ci right 7.602324e-04	k: 2068	n:2840000
Cons ci ratio: 1.239239e-03	ci left: 7.784370e-01	ci right 7.794026e-01	k: 2212133	n:2840000
KS ci ratio: 1.432148e-01	ci left: 2.448435e-04	ci right 2.829482e-04	k: 748	n:2840000
CILP2   2840000 perm   4342 sec   (654 perm/sec)   p_kst 2.633803e-04   p_cons 7.789201e-01   p_joint 7.281690e-04

Joint ci ratio: 8.596167e-02	ci left: 6.977747e-04	ci right 7.607908e-04	k: 2077	n:2850000
Cons ci ratio: 1.237189e-03	ci left: 7.784026e-01	ci right 7.793666e-01	k: 2219822	n:2850000
KS ci ratio: 1.431193e-01	ci left: 2.443227e-04	ci right 2.823189e-04	k: 749	n:2850000
CILP2   2850000 perm   4370 sec   (652 perm/sec)   p_kst 2.628070e-04   p_cons 7.788849e-01   p_joint 7.287719e-04

Joint ci ratio: 8.583785e-02	ci left: 6.973877e-04	ci right 7.602736e-04	k: 2083	n:2860000
Cons ci ratio: 1.234960e-03	ci left: 7.784214e-01	ci right 7.793836e-01	k: 2227662	n:2860000
KS ci ratio: 1.431194e-01	ci left: 2.434684e-04	ci right 2.813317e-04	k: 749	n:2860000
CILP2   2860000 perm   4398 sec   (650 perm/sec)   p_kst 2.618881e-04   p_cons 7.789028e-01   p_joint 7.283217e-04

Joint ci ratio: 8.623224e-02	ci left: 6.884799e-04	ci right 7.508622e-04	k: 2064	n:2870000
Cons ci ratio: 1.232805e-03	ci left: 7.784229e-01	ci right 7.793835e-01	k: 2235453	n:2870000
KS ci ratio: 1.429289e-01	ci left: 2.432920e-04	ci right 2.810733e-04	k: 751	n:2870000
CILP2   2870000 perm   4427 sec   (648 perm/sec)   p_kst 2.616725e-04   p_cons 7.789035e-01   p_joint 7.191638e-04

Joint ci ratio: 8.602416e-02	ci left: 6.894868e-04	ci right 7.518020e-04	k: 2074	n:2880000
Cons ci ratio: 1.230694e-03	ci left: 7.784151e-01	ci right 7.793740e-01	k: 2243217	n:2880000
KS ci ratio: 1.428340e-01	ci left: 2.427820e-04	ci right 2.804570e-04	k: 752	n:2880000
CILP2   2880000 perm   4455 sec   (646 perm/sec)   p_kst 2.611111e-04   p_cons 7.788948e-01   p_joint 7.201389e-04

Joint ci ratio: 8.590007e-02	ci left: 6.891325e-04	ci right 7.513213e-04	k: 2080	n:2890000
Cons ci ratio: 1.228604e-03	ci left: 7.784041e-01	ci right 7.793614e-01	k: 2250972	n:2890000
KS ci ratio: 1.423621e-01	ci left: 2.436104e-04	ci right 2.812783e-04	k: 757	n:2890000
CILP2   2890000 perm   4483 sec   (645 perm/sec)   p_kst 2.619377e-04   p_cons 7.788830e-01   p_joint 7.197232e-04

Joint ci ratio: 8.569438e-02	ci left: 6.901305e-04	ci right 7.522528e-04	k: 2090	n:2900000
Cons ci ratio: 1.226514e-03	ci left: 7.783967e-01	ci right 7.793524e-01	k: 2258737	n:2900000
KS ci ratio: 1.418019e-01	ci left: 2.447657e-04	ci right 2.824508e-04	k: 763	n:2900000
CILP2   2900000 perm   4511 sec   (643 perm/sec)   p_kst 2.631034e-04   p_cons 7.788748e-01   p_joint 7.206897e-04

Joint ci ratio: 8.665361e-02	ci left: 6.722917e-04	ci right 7.335199e-04	k: 2044	n:2910000
Cons ci ratio: 1.224481e-03	ci left: 7.783760e-01	ci right 7.793300e-01	k: 2266463	n:2910000
KS ci ratio: 1.417092e-01	ci left: 2.442561e-04	ci right 2.818360e-04	k: 764	n:2910000
CILP2   2910000 perm   4540 sec   (641 perm/sec)   p_kst 2.625430e-04   p_cons 7.788533e-01   p_joint 7.024055e-04

Joint ci ratio: 8.646353e-02	ci left: 6.730048e-04	ci right 7.341567e-04	k: 2053	n:2920000
Cons ci ratio: 1.222332e-03	ci left: 7.783910e-01	ci right 7.793434e-01	k: 2274293	n:2920000
KS ci ratio: 1.411567e-01	ci left: 2.454017e-04	ci right 2.829983e-04	k: 770	n:2920000
CILP2   2920000 perm   4569 sec   (639 perm/sec)   p_kst 2.636986e-04   p_cons 7.788675e-01   p_joint 7.030822e-04

Joint ci ratio: 8.631657e-02	ci left: 6.730453e-04	ci right 7.340918e-04	k: 2060	n:2930000
Cons ci ratio: 1.220203e-03	ci left: 7.784035e-01	ci right 7.793543e-01	k: 2282116	n:2930000
KS ci ratio: 1.408829e-01	ci left: 2.455519e-04	ci right 2.830924e-04	k: 773	n:2930000
CILP2   2930000 perm   4597 sec   (637 perm/sec)   p_kst 2.638225e-04   p_cons 7.788792e-01   p_joint 7.030717e-04

Joint ci ratio: 8.614952e-02	ci left: 6.734185e-04	ci right 7.343746e-04	k: 2068	n:2940000
Cons ci ratio: 1.218100e-03	ci left: 7.784116e-01	ci right 7.793607e-01	k: 2289926	n:2940000
KS ci ratio: 1.405202e-01	ci left: 2.460293e-04	ci right 2.835379e-04	k: 777	n:2940000
CILP2   2940000 perm   4626 sec   (636 perm/sec)   p_kst 2.642857e-04   p_cons 7.788864e-01   p_joint 7.034014e-04

Joint ci ratio: 8.598344e-02	ci left: 6.737892e-04	ci right 7.346554e-04	k: 2076	n:2950000
Cons ci ratio: 1.216049e-03	ci left: 7.784080e-01	ci right 7.793555e-01	k: 2297702	n:2950000
KS ci ratio: 1.403399e-01	ci left: 2.458495e-04	ci right 2.832785e-04	k: 779	n:2950000
CILP2   2950000 perm   4655 sec   (634 perm/sec)   p_kst 2.640678e-04   p_cons 7.788820e-01   p_joint 7.037288e-04

Joint ci ratio: 8.590081e-02	ci left: 6.728352e-04	ci right 7.335539e-04	k: 2080	n:2960000
Cons ci ratio: 1.214003e-03	ci left: 7.784062e-01	ci right 7.793521e-01	k: 2305483	n:2960000
KS ci ratio: 1.402501e-01	ci left: 2.453449e-04	ci right 2.826712e-04	k: 780	n:2960000
CILP2   2960000 perm   4684 sec   (632 perm/sec)   p_kst 2.635135e-04   p_cons 7.788794e-01   p_joint 7.027027e-04

Joint ci ratio: 8.581841e-02	ci left: 6.718876e-04	ci right 7.324597e-04	k: 2084	n:2970000
Cons ci ratio: 1.212001e-03	ci left: 7.783946e-01	ci right 7.793389e-01	k: 2313235	n:2970000
KS ci ratio: 1.402502e-01	ci left: 2.445188e-04	ci right 2.817195e-04	k: 780	n:2970000
CILP2   2970000 perm   4714 sec   (630 perm/sec)   p_kst 2.626263e-04   p_cons 7.788670e-01   p_joint 7.016835e-04

Joint ci ratio: 8.592167e-02	ci left: 6.679911e-04	ci right 7.282880e-04	k: 2079	n:2980000
Cons ci ratio: 1.209941e-03	ci left: 7.784025e-01	ci right 7.793452e-01	k: 2321045	n:2980000
KS ci ratio: 1.398923e-01	ci left: 2.449935e-04	ci right 2.821634e-04	k: 784	n:2980000
CILP2   2980000 perm   4743 sec   (628 perm/sec)   p_kst 2.630872e-04   p_cons 7.788742e-01   p_joint 6.976510e-04

Joint ci ratio: 8.575690e-02	ci left: 6.683752e-04	ci right 7.285852e-04	k: 2087	n:2990000
Cons ci ratio: 1.207887e-03	ci left: 7.784114e-01	ci right 7.793526e-01	k: 2328858	n:2990000
KS ci ratio: 1.396258e-01	ci left: 2.451424e-04	ci right 2.822581e-04	k: 787	n:2990000
CILP2   2990000 perm   4772 sec   (627 perm/sec)   p_kst 2.632107e-04   p_cons 7.788823e-01   p_joint 6.979933e-04

Joint ci ratio: 8.551145e-02	ci left: 6.700616e-04	ci right 7.302422e-04	k: 2099	n:3000000
Cons ci ratio: 1.205858e-03	ci left: 7.784163e-01	ci right 7.793558e-01	k: 2336659	n:3000000
KS ci ratio: 1.391849e-01	ci left: 2.459338e-04	ci right 2.830420e-04	k: 792	n:3000000
CILP2   3000000 perm   4801 sec   (625 perm/sec)   p_kst 2.640000e-04   p_cons 7.788863e-01   p_joint 6.996667e-04

Joint ci ratio: 8.530854e-02	ci left: 6.710868e-04	ci right 7.312094e-04	k: 2109	n:3010000
Cons ci ratio: 1.203811e-03	ci left: 7.784291e-01	ci right 7.793671e-01	k: 2344484	n:3010000
KS ci ratio: 1.388351e-01	ci left: 2.463994e-04	ci right 2.834767e-04	k: 796	n:3010000
CILP2   3010000 perm   4831 sec   (623 perm/sec)   p_kst 2.644518e-04   p_cons 7.788983e-01   p_joint 7.006645e-04

Joint ci ratio: 8.817803e-02	ci left: 6.251314e-04	ci right 6.831177e-04	k: 1974	n:3020000
Cons ci ratio: 1.201818e-03	ci left: 7.784295e-01	ci right 7.793659e-01	k: 2352272	n:3020000
KS ci ratio: 1.388352e-01	ci left: 2.455836e-04	ci right 2.825381e-04	k: 796	n:3020000
CILP2   3020000 perm   4861 sec   (621 perm/sec)   p_kst 2.635762e-04   p_cons 7.788980e-01   p_joint 6.536424e-04

Joint ci ratio: 8.811119e-02	ci left: 6.240366e-04	ci right 6.818751e-04	k: 1977	n:3030000
Cons ci ratio: 1.199779e-03	ci left: 7.784458e-01	ci right 7.793807e-01	k: 2360108	n:3030000
KS ci ratio: 1.387482e-01	ci left: 2.450916e-04	ci right 2.819471e-04	k: 797	n:3030000
CILP2   3030000 perm   4892 sec   (619 perm/sec)   p_kst 2.630363e-04   p_cons 7.789135e-01   p_joint 6.524752e-04

Joint ci ratio: 8.847006e-02	ci left: 6.168368e-04	ci right 6.742529e-04	k: 1961	n:3040000
Cons ci ratio: 1.197806e-03	ci left: 7.784459e-01	ci right 7.793792e-01	k: 2367895	n:3040000
KS ci ratio: 1.383155e-01	ci left: 2.458731e-04	ci right 2.827213e-04	k: 802	n:3040000
CILP2   3040000 perm   4923 sec   (618 perm/sec)   p_kst 2.638158e-04   p_cons 7.789128e-01   p_joint 6.450658e-04

Joint ci ratio: 7.446073e-02	ci left: 8.740582e-04	ci right 9.419771e-04	k: 2768	n:3050000
Cons ci ratio: 1.195879e-03	ci left: 7.784358e-01	ci right 7.793676e-01	k: 2375651	n:3050000
KS ci ratio: 1.381436e-01	ci left: 2.457000e-04	ci right 2.824728e-04	k: 804	n:3050000
CILP2   3050000 perm   4954 sec   (616 perm/sec)   p_kst 2.636066e-04   p_cons 7.789020e-01   p_joint 9.075410e-04

Joint ci ratio: 7.427314e-02	ci left: 8.756919e-04	ci right 9.435590e-04	k: 2782	n:3060000
Cons ci ratio: 1.193817e-03	ci left: 7.784673e-01	ci right 7.793975e-01	k: 2383534	n:3060000
KS ci ratio: 1.377165e-01	ci left: 2.464747e-04	ci right 2.832400e-04	k: 809	n:3060000
CILP2   3060000 perm   4984 sec   (614 perm/sec)   p_kst 2.643791e-04   p_cons 7.789327e-01   p_joint 9.091503e-04

Joint ci ratio: 7.410023e-02	ci left: 8.769955e-04	ci right 9.447985e-04	k: 2795	n:3070000
Cons ci ratio: 1.191905e-03	ci left: 7.784582e-01	ci right 7.793869e-01	k: 2391293	n:3070000
KS ci ratio: 1.374622e-01	ci left: 2.466154e-04	ci right 2.833282e-04	k: 812	n:3070000
CILP2   3070000 perm   5014 sec   (612 perm/sec)   p_kst 2.644951e-04   p_cons 7.789228e-01   p_joint 9.104235e-04

Joint ci ratio: 7.558970e-02	ci left: 8.394201e-04	ci right 9.056799e-04	k: 2686	n:3080000
Cons ci ratio: 1.190019e-03	ci left: 7.784442e-01	ci right 7.793715e-01	k: 2399037	n:3080000
KS ci ratio: 1.371252e-01	ci left: 2.470688e-04	ci right 2.837516e-04	k: 816	n:3080000
CILP2   3080000 perm   5045 sec   (611 perm/sec)   p_kst 2.649351e-04   p_cons 7.789081e-01   p_joint 8.720779e-04

Joint ci ratio: 7.551952e-02	ci left: 8.382911e-04	ci right 9.043976e-04	k: 2691	n:3090000
Cons ci ratio: 1.188001e-03	ci left: 7.784715e-01	ci right 7.793972e-01	k: 2406908	n:3090000
KS ci ratio: 1.370414e-01	ci left: 2.465818e-04	ci right 2.831680e-04	k: 817	n:3090000
CILP2   3090000 perm   5075 sec   (609 perm/sec)   p_kst 2.644013e-04   p_cons 7.789346e-01   p_joint 8.708738e-04

Joint ci ratio: 7.543553e-02	ci left: 8.374858e-04	ci right 9.034522e-04	k: 2697	n:3100000
Cons ci ratio: 1.186108e-03	ci left: 7.784651e-01	ci right 7.793893e-01	k: 2414675	n:3100000
KS ci ratio: 1.370415e-01	ci left: 2.457863e-04	ci right 2.822546e-04	k: 817	n:3100000
CILP2   3100000 perm   5107 sec   (607 perm/sec)   p_kst 2.635484e-04   p_cons 7.789274e-01   p_joint 8.700000e-04

Joint ci ratio: 7.532395e-02	ci left: 8.373168e-04	ci right 9.031681e-04	k: 2705	n:3110000
Cons ci ratio: 1.184128e-03	ci left: 7.784866e-01	ci right 7.794093e-01	k: 2422529	n:3110000
KS ci ratio: 1.367909e-01	ci left: 2.459276e-04	ci right 2.823447e-04	k: 820	n:3110000
CILP2   3110000 perm   5137 sec   (605 perm/sec)   p_kst 2.636656e-04   p_cons 7.789482e-01   p_joint 8.697749e-04

Joint ci ratio: 7.514361e-02	ci left: 8.387214e-04	ci right 9.045183e-04	k: 2718	n:3120000
Cons ci ratio: 1.182288e-03	ci left: 7.784702e-01	ci right 7.793914e-01	k: 2430265	n:3120000
KS ci ratio: 1.363762e-01	ci left: 2.466872e-04	ci right 2.830970e-04	k: 825	n:3120000
CILP2   3120000 perm   5170 sec   (604 perm/sec)   p_kst 2.644231e-04   p_cons 7.789311e-01   p_joint 8.711538e-04

Joint ci ratio: 7.503332e-02	ci left: 8.385497e-04	ci right 9.042324e-04	k: 2726	n:3130000
Cons ci ratio: 1.180352e-03	ci left: 7.784843e-01	ci right 7.794040e-01	k: 2438096	n:3130000
KS ci ratio: 1.362114e-01	ci left: 2.465163e-04	ci right 2.828533e-04	k: 827	n:3130000
CILP2   3130000 perm   5201 sec   (602 perm/sec)   p_kst 2.642173e-04   p_cons 7.789444e-01   p_joint 8.709265e-04

Joint ci ratio: 7.493722e-02	ci left: 8.380667e-04	ci right 9.036238e-04	k: 2733	n:3140000
Cons ci ratio: 1.178554e-03	ci left: 7.784607e-01	ci right 7.793790e-01	k: 2445809	n:3140000
KS ci ratio: 1.361292e-01	ci left: 2.460388e-04	ci right 2.822818e-04	k: 828	n:3140000
CILP2   3140000 perm   5231 sec   (600 perm/sec)   p_kst 2.636943e-04   p_cons 7.789201e-01   p_joint 8.703822e-04

Joint ci ratio: 7.559044e-02	ci left: 8.207660e-04	ci right 8.855540e-04	k: 2686	n:3150000
Cons ci ratio: 1.176700e-03	ci left: 7.784559e-01	ci right 7.793728e-01	k: 2453581	n:3150000
KS ci ratio: 1.359653e-01	ci left: 2.458710e-04	ci right 2.820422e-04	k: 830	n:3150000
CILP2   3150000 perm   5263 sec   (598 perm/sec)   p_kst 2.634921e-04   p_cons 7.789146e-01   p_joint 8.526984e-04

Joint ci ratio: 7.546415e-02	ci left: 8.209630e-04	ci right 8.856535e-04	k: 2695	n:3160000
Cons ci ratio: 1.174809e-03	ci left: 7.784648e-01	ci right 7.793802e-01	k: 2461396	n:3160000
KS ci ratio: 1.358836e-01	ci left: 2.453986e-04	ci right 2.814769e-04	k: 831	n:3160000
CILP2   3160000 perm   5294 sec   (597 perm/sec)   p_kst 2.629747e-04   p_cons 7.789228e-01   p_joint 8.528481e-04

Joint ci ratio: 7.549229e-02	ci left: 8.177541e-04	ci right 8.822169e-04	k: 2693	n:3170000
Cons ci ratio: 1.172931e-03	ci left: 7.784724e-01	ci right 7.793864e-01	k: 2469207	n:3170000
KS ci ratio: 1.358021e-01	ci left: 2.449292e-04	ci right 2.809151e-04	k: 832	n:3170000
CILP2   3170000 perm   5325 sec   (595 perm/sec)   p_kst 2.624606e-04   p_cons 7.789297e-01   p_joint 8.495268e-04

Joint ci ratio: 7.531075e-02	ci left: 8.191936e-04	ci right 8.836077e-04	k: 2706	n:3180000
Cons ci ratio: 1.171013e-03	ci left: 7.784945e-01	ci right 7.794069e-01	k: 2477064	n:3180000
KS ci ratio: 1.354772e-01	ci left: 2.453742e-04	ci right 2.813322e-04	k: 836	n:3180000
CILP2   3180000 perm   5356 sec   (594 perm/sec)   p_kst 2.628931e-04   p_cons 7.789509e-01   p_joint 8.509434e-04

Joint ci ratio: 7.525522e-02	ci left: 8.178559e-04	ci right 8.821153e-04	k: 2710	n:3190000
Cons ci ratio: 1.169167e-03	ci left: 7.784978e-01	ci right 7.794089e-01	k: 2484862	n:3190000
KS ci ratio: 1.354772e-01	ci left: 2.446050e-04	ci right 2.804503e-04	k: 836	n:3190000
CILP2   3190000 perm   5386 sec   (592 perm/sec)   p_kst 2.620690e-04   p_cons 7.789536e-01   p_joint 8.495298e-04

Joint ci ratio: 7.510298e-02	ci left: 8.186730e-04	ci right 8.828608e-04	k: 2721	n:3200000
Cons ci ratio: 1.167351e-03	ci left: 7.784949e-01	ci right 7.794045e-01	k: 2492640	n:3200000
KS ci ratio: 1.352351e-01	ci left: 2.447464e-04	ci right 2.805431e-04	k: 839	n:3200000
CILP2   3200000 perm   5417 sec   (591 perm/sec)   p_kst 2.621875e-04   p_cons 7.789500e-01   p_joint 8.503125e-04

Joint ci ratio: 7.496538e-02	ci left: 8.191794e-04	ci right 8.832842e-04	k: 2731	n:3210000
Cons ci ratio: 1.165500e-03	ci left: 7.785049e-01	ci right 7.794130e-01	k: 2500459	n:3210000
KS ci ratio: 1.349142e-01	ci left: 2.451879e-04	ci right 2.809574e-04	k: 843	n:3210000
CILP2   3210000 perm   5448 sec   (589 perm/sec)   p_kst 2.626168e-04   p_cons 7.789592e-01   p_joint 8.507788e-04

Joint ci ratio: 7.488323e-02	ci left: 8.184638e-04	ci right 8.824393e-04	k: 2737	n:3220000
Cons ci ratio: 1.163698e-03	ci left: 7.785029e-01	ci right 7.794097e-01	k: 2508240	n:3220000
KS ci ratio: 1.347546e-01	ci left: 2.450266e-04	ci right 2.807269e-04	k: 845	n:3220000
CILP2   3220000 perm   5481 sec   (588 perm/sec)   p_kst 2.624224e-04   p_cons 7.789565e-01   p_joint 8.500000e-04

Joint ci ratio: 7.687616e-02	ci left: 7.734078e-04	ci right 8.355423e-04	k: 2597	n:3230000
Cons ci ratio: 1.161903e-03	ci left: 7.785012e-01	ci right 7.794066e-01	k: 2516022	n:3230000
KS ci ratio: 1.345957e-01	ci left: 2.448664e-04	ci right 2.804978e-04	k: 847	n:3230000
CILP2   3230000 perm   5514 sec   (586 perm/sec)   p_kst 2.622291e-04   p_cons 7.789542e-01   p_joint 8.040248e-04

Joint ci ratio: 7.681710e-02	ci left: 7.722315e-04	ci right 8.342218e-04	k: 2601	n:3240000
Cons ci ratio: 1.160129e-03	ci left: 7.784959e-01	ci right 7.793999e-01	k: 2523792	n:3240000
KS ci ratio: 1.344372e-01	ci left: 2.447071e-04	ci right 2.802701e-04	k: 849	n:3240000
CILP2   3240000 perm   5546 sec   (584 perm/sec)   p_kst 2.620370e-04   p_cons 7.789481e-01   p_joint 8.027778e-04

Joint ci ratio: 7.665520e-02	ci left: 7.731751e-04	ci right 8.351045e-04	k: 2612	n:3250000
Cons ci ratio: 1.158318e-03	ci left: 7.785042e-01	ci right 7.794067e-01	k: 2531606	n:3250000
KS ci ratio: 1.341220e-01	ci left: 2.451436e-04	ci right 2.806798e-04	k: 853	n:3250000
CILP2   3250000 perm   5579 sec   (583 perm/sec)   p_kst 2.624615e-04   p_cons 7.789557e-01   p_joint 8.036923e-04

Joint ci ratio: 7.655274e-02	ci left: 7.729095e-04	ci right 8.347312e-04	k: 2619	n:3260000
Cons ci ratio: 1.156590e-03	ci left: 7.784899e-01	ci right 7.793912e-01	k: 2539347	n:3260000
KS ci ratio: 1.339652e-01	ci left: 2.449846e-04	ci right 2.804529e-04	k: 855	n:3260000
CILP2   3260000 perm   5612 sec   (581 perm/sec)   p_kst 2.622699e-04   p_cons 7.789408e-01   p_joint 8.033742e-04

Joint ci ratio: 7.646526e-02	ci left: 7.723456e-04	ci right 8.340485e-04	k: 2625	n:3270000
Cons ci ratio: 1.154832e-03	ci left: 7.784871e-01	ci right 7.793870e-01	k: 2547125	n:3270000
KS ci ratio: 1.339653e-01	ci left: 2.442354e-04	ci right 2.795953e-04	k: 855	n:3270000
CILP2   3270000 perm   5645 sec   (579 perm/sec)   p_kst 2.614679e-04   p_cons 7.789373e-01   p_joint 8.027523e-04

Joint ci ratio: 7.639261e-02	ci left: 7.714862e-04	ci right 8.330592e-04	k: 2630	n:3280000
Cons ci ratio: 1.153000e-03	ci left: 7.785088e-01	ci right 7.794072e-01	k: 2554983	n:3280000
KS ci ratio: 1.337311e-01	ci left: 2.443747e-04	ci right 2.796881e-04	k: 858	n:3280000
CILP2   3280000 perm   5678 sec   (578 perm/sec)   p_kst 2.615854e-04   p_cons 7.789582e-01   p_joint 8.018293e-04

Joint ci ratio: 7.621894e-02	ci left: 7.727191e-04	ci right 8.342440e-04	k: 2642	n:3290000
Cons ci ratio: 1.151222e-03	ci left: 7.785166e-01	ci right 7.794136e-01	k: 2562796	n:3290000
KS ci ratio: 1.334982e-01	ci left: 2.445133e-04	ci right 2.797803e-04	k: 861	n:3290000
CILP2   3290000 perm   5713 sec   (576 perm/sec)   p_kst 2.617021e-04   p_cons 7.789653e-01   p_joint 8.030395e-04

Joint ci ratio: 7.603212e-02	ci left: 7.742419e-04	ci right 8.357304e-04	k: 2655	n:3300000
Cons ci ratio: 1.149465e-03	ci left: 7.785207e-01	ci right 7.794164e-01	k: 2570597	n:3300000
KS ci ratio: 1.334209e-01	ci left: 2.440653e-04	ci right 2.792456e-04	k: 862	n:3300000
CILP2   3300000 perm   5746 sec   (574 perm/sec)   p_kst 2.612121e-04   p_cons 7.789688e-01   p_joint 8.045455e-04

Joint ci ratio: 7.593214e-02	ci left: 7.739774e-04	ci right 8.353605e-04	k: 2662	n:3310000
Cons ci ratio: 1.147717e-03	ci left: 7.785245e-01	ci right 7.794188e-01	k: 2578397	n:3310000
KS ci ratio: 1.332666e-01	ci left: 2.439120e-04	ci right 2.790263e-04	k: 864	n:3310000
CILP2   3310000 perm   5781 sec   (573 perm/sec)   p_kst 2.610272e-04   p_cons 7.789719e-01   p_joint 8.042296e-04

Joint ci ratio: 7.584677e-02	ci left: 7.734191e-04	ci right 8.346859e-04	k: 2668	n:3320000
Cons ci ratio: 1.145952e-03	ci left: 7.785358e-01	ci right 7.794288e-01	k: 2586222	n:3320000
KS ci ratio: 1.331128e-01	ci left: 2.437597e-04	ci right 2.788084e-04	k: 866	n:3320000
CILP2   3320000 perm   5813 sec   (571 perm/sec)   p_kst 2.608434e-04   p_cons 7.789825e-01   p_joint 8.036145e-04

Joint ci ratio: 7.573335e-02	ci left: 7.734534e-04	ci right 8.346272e-04	k: 2676	n:3330000
Cons ci ratio: 1.144261e-03	ci left: 7.785272e-01	ci right 7.794188e-01	k: 2593981	n:3330000
KS ci ratio: 1.330361e-01	ci left: 2.433180e-04	ci right 2.782814e-04	k: 867	n:3330000
CILP2   3330000 perm   5844 sec   (570 perm/sec)   p_kst 2.603604e-04   p_cons 7.789733e-01   p_joint 8.036036e-04

Joint ci ratio: 7.553603e-02	ci left: 7.752500e-04	ci right 8.363992e-04	k: 2690	n:3340000
Cons ci ratio: 1.142550e-03	ci left: 7.785268e-01	ci right 7.794171e-01	k: 2601767	n:3340000
KS ci ratio: 1.325028e-01	ci left: 2.446157e-04	ci right 2.796136e-04	k: 874	n:3340000
CILP2   3340000 perm   5876 sec   (568 perm/sec)   p_kst 2.616766e-04   p_cons 7.789722e-01   p_joint 8.053892e-04

Joint ci ratio: 7.549401e-02	ci left: 7.738145e-04	ci right 8.348149e-04	k: 2693	n:3350000
Cons ci ratio: 1.140801e-03	ci left: 7.785404e-01	ci right 7.794293e-01	k: 2609600	n:3350000
KS ci ratio: 1.325029e-01	ci left: 2.438855e-04	ci right 2.787789e-04	k: 874	n:3350000
CILP2   3350000 perm   5910 sec   (567 perm/sec)   p_kst 2.608955e-04   p_cons 7.789851e-01   p_joint 8.038806e-04

Joint ci ratio: 7.535426e-02	ci left: 7.744315e-04	ci right 8.353627e-04	k: 2703	n:3360000
Cons ci ratio: 1.139079e-03	ci left: 7.785479e-01	ci right 7.794355e-01	k: 2617413	n:3360000
KS ci ratio: 1.322763e-01	ci left: 2.440229e-04	ci right 2.788716e-04	k: 877	n:3360000
CILP2   3360000 perm   5945 sec   (565 perm/sec)   p_kst 2.610119e-04   p_cons 7.789920e-01   p_joint 8.044643e-04

Joint ci ratio: 7.524304e-02	ci left: 7.744627e-04	ci right 8.353024e-04	k: 2711	n:3370000
Cons ci ratio: 1.137488e-03	ci left: 7.785183e-01	ci right 7.794047e-01	k: 2625101	n:3370000
KS ci ratio: 1.320509e-01	ci left: 2.441596e-04	ci right 2.789638e-04	k: 880	n:3370000
CILP2   3370000 perm   5979 sec   (564 perm/sec)   p_kst 2.611276e-04   p_cons 7.789617e-01   p_joint 8.044510e-04

Joint ci ratio: 7.515997e-02	ci left: 7.739131e-04	ci right 8.346396e-04	k: 2717	n:3380000
Cons ci ratio: 1.135816e-03	ci left: 7.785152e-01	ci right 7.794003e-01	k: 2632878	n:3380000
KS ci ratio: 1.320509e-01	ci left: 2.434372e-04	ci right 2.781384e-04	k: 880	n:3380000
CILP2   3380000 perm   6012 sec   (562 perm/sec)   p_kst 2.603550e-04   p_cons 7.789580e-01   p_joint 8.038462e-04

Joint ci ratio: 7.500831e-02	ci left: 7.748141e-04	ci right 8.354833e-04	k: 2728	n:3390000
Cons ci ratio: 1.134124e-03	ci left: 7.785207e-01	ci right 7.794045e-01	k: 2640684	n:3390000
KS ci ratio: 1.320510e-01	ci left: 2.427191e-04	ci right 2.773180e-04	k: 880	n:3390000
CILP2   3390000 perm   6045 sec   (561 perm/sec)   p_kst 2.595870e-04   p_cons 7.789628e-01   p_joint 8.047198e-04

Joint ci ratio: 7.549446e-02	ci left: 7.624347e-04	ci right 8.225384e-04	k: 2693	n:3400000
Cons ci ratio: 1.132429e-03	ci left: 7.785291e-01	ci right 7.794116e-01	k: 2648500	n:3400000
KS ci ratio: 1.319761e-01	ci left: 2.422896e-04	ci right 2.768062e-04	k: 881	n:3400000
CILP2   3400000 perm   6078 sec   (559 perm/sec)   p_kst 2.591176e-04   p_cons 7.789706e-01   p_joint 7.920588e-04

Joint ci ratio: 7.542453e-02	ci left: 7.616374e-04	ci right 8.216202e-04	k: 2698	n:3410000
Cons ci ratio: 1.130733e-03	ci left: 7.785404e-01	ci right 7.794215e-01	k: 2656326	n:3410000
KS ci ratio: 1.319014e-01	ci left: 2.418627e-04	ci right 2.762973e-04	k: 882	n:3410000
CILP2   3410000 perm   6113 sec   (558 perm/sec)   p_kst 2.586510e-04   p_cons 7.789812e-01   p_joint 7.912023e-04

Joint ci ratio: 7.534086e-02	ci left: 7.611317e-04	ci right 8.210053e-04	k: 2704	n:3420000
Cons ci ratio: 1.129034e-03	ci left: 7.785546e-01	ci right 7.794344e-01	k: 2664162	n:3420000
KS ci ratio: 1.319015e-01	ci left: 2.411555e-04	ci right 2.754895e-04	k: 882	n:3420000
CILP2   3420000 perm   6148 sec   (556 perm/sec)   p_kst 2.578947e-04   p_cons 7.789947e-01   p_joint 7.906433e-04

Joint ci ratio: 7.518810e-02	ci left: 7.620593e-04	ci right 8.218790e-04	k: 2715	n:3430000
Cons ci ratio: 1.127430e-03	ci left: 7.785421e-01	ci right 7.794207e-01	k: 2671907	n:3430000
KS ci ratio: 1.316037e-01	ci left: 2.415801e-04	ci right 2.758909e-04	k: 886	n:3430000
CILP2   3430000 perm   6183 sec   (555 perm/sec)   p_kst 2.583090e-04   p_cons 7.789816e-01   p_joint 7.915452e-04

Joint ci ratio: 7.509140e-02	ci left: 7.618407e-04	ci right 8.215630e-04	k: 2722	n:3440000
Cons ci ratio: 1.125752e-03	ci left: 7.785545e-01	ci right 7.794317e-01	k: 2679737	n:3440000
KS ci ratio: 1.315296e-01	ci left: 2.411590e-04	ci right 2.753891e-04	k: 887	n:3440000
CILP2   3440000 perm   6215 sec   (553 perm/sec)   p_kst 2.578488e-04   p_cons 7.789933e-01   p_joint 7.912791e-04

Joint ci ratio: 7.505013e-02	ci left: 7.604856e-04	ci right 8.200675e-04	k: 2725	n:3450000
Cons ci ratio: 1.124146e-03	ci left: 7.785470e-01	ci right 7.794230e-01	k: 2687499	n:3450000
KS ci ratio: 1.315296e-01	ci left: 2.404600e-04	ci right 2.745909e-04	k: 887	n:3450000
CILP2   3450000 perm   6249 sec   (552 perm/sec)   p_kst 2.571014e-04   p_cons 7.789852e-01   p_joint 7.898551e-04

Joint ci ratio: 7.491283e-02	ci left: 7.611237e-04	ci right 8.206417e-04	k: 2735	n:3460000
Cons ci ratio: 1.122528e-03	ci left: 7.785451e-01	ci right 7.794198e-01	k: 2695280	n:3460000
KS ci ratio: 1.313818e-01	ci left: 2.403240e-04	ci right 2.743943e-04	k: 889	n:3460000
CILP2   3460000 perm   6282 sec   (551 perm/sec)   p_kst 2.569364e-04   p_cons 7.789827e-01   p_joint 7.904624e-04

Joint ci ratio: 7.476265e-02	ci left: 7.620410e-04	ci right 8.215061e-04	k: 2746	n:3470000
Cons ci ratio: 1.120847e-03	ci left: 7.785651e-01	ci right 7.794385e-01	k: 2703137	n:3470000
KS ci ratio: 1.312344e-01	ci left: 2.401889e-04	ci right 2.741989e-04	k: 891	n:3470000
CILP2   3470000 perm   6315 sec   (550 perm/sec)   p_kst 2.567723e-04   p_cons 7.790020e-01   p_joint 7.913545e-04

Joint ci ratio: 7.457280e-02	ci left: 7.637991e-04	ci right 8.232435e-04	k: 2760	n:3480000
Cons ci ratio: 1.119189e-03	ci left: 7.785798e-01	ci right 7.794519e-01	k: 2710976	n:3480000
KS ci ratio: 1.308681e-01	ci left: 2.408884e-04	ci right 2.748948e-04	k: 896	n:3480000
CILP2   3480000 perm   6349 sec   (548 perm/sec)   p_kst 2.574713e-04   p_cons 7.790161e-01   p_joint 7.931034e-04

Joint ci ratio: 7.453237e-02	ci left: 7.624541e-04	ci right 8.217603e-04	k: 2763	n:3490000
Cons ci ratio: 1.117551e-03	ci left: 7.785907e-01	ci right 7.794616e-01	k: 2718802	n:3490000
KS ci ratio: 1.307952e-01	ci left: 2.404753e-04	ci right 2.744030e-04	k: 897	n:3490000
CILP2   3490000 perm   6382 sec   (547 perm/sec)   p_kst 2.570201e-04   p_cons 7.790264e-01   p_joint 7.916905e-04

Joint ci ratio: 7.442474e-02	ci left: 7.625188e-04	ci right 8.217407e-04	k: 2771	n:3500000
Cons ci ratio: 1.115955e-03	ci left: 7.785910e-01	ci right 7.794606e-01	k: 2726591	n:3500000
KS ci ratio: 1.306498e-01	ci left: 2.403410e-04	ci right 2.742091e-04	k: 899	n:3500000
CILP2   3500000 perm   6416 sec   (545 perm/sec)   p_kst 2.568571e-04   p_cons 7.790260e-01   p_joint 7.917143e-04

Joint ci ratio: 7.434435e-02	ci left: 7.620240e-04	ci right 8.211407e-04	k: 2777	n:3510000
Cons ci ratio: 1.114328e-03	ci left: 7.786026e-01	ci right 7.794710e-01	k: 2734420	n:3510000
KS ci ratio: 1.303605e-01	ci left: 2.407586e-04	ci right 2.746047e-04	k: 903	n:3510000
CILP2   3510000 perm   6450 sec   (544 perm/sec)   p_kst 2.572650e-04   p_cons 7.790370e-01   p_joint 7.911681e-04

Joint ci ratio: 7.429092e-02	ci left: 7.609744e-04	ci right 8.199654e-04	k: 2781	n:3520000
Cons ci ratio: 1.112763e-03	ci left: 7.785974e-01	ci right 7.794646e-01	k: 2742190	n:3520000
KS ci ratio: 1.303605e-01	ci left: 2.400747e-04	ci right 2.738246e-04	k: 903	n:3520000
CILP2   3520000 perm   6484 sec   (543 perm/sec)   p_kst 2.565341e-04   p_cons 7.790312e-01   p_joint 7.900568e-04

Joint ci ratio: 7.418434e-02	ci left: 7.610429e-04	ci right 8.199509e-04	k: 2789	n:3530000
Cons ci ratio: 1.111148e-03	ci left: 7.786099e-01	ci right 7.794758e-01	k: 2750022	n:3530000
KS ci ratio: 1.300014e-01	ci left: 2.407649e-04	ci right 2.745114e-04	k: 908	n:3530000
CILP2   3530000 perm   6517 sec   (542 perm/sec)   p_kst 2.572238e-04   p_cons 7.790431e-01   p_joint 7.900850e-04

Joint ci ratio: 7.401205e-02	ci left: 7.624973e-04	ci right 8.213750e-04	k: 2802	n:3540000
Cons ci ratio: 1.109585e-03	ci left: 7.786081e-01	ci right 7.794728e-01	k: 2757804	n:3540000
KS ci ratio: 1.297163e-01	ci left: 2.411780e-04	ci right 2.749026e-04	k: 912	n:3540000
CILP2   3540000 perm   6551 sec   (540 perm/sec)   p_kst 2.576271e-04   p_cons 7.790407e-01   p_joint 7.915254e-04

Joint ci ratio: 7.435807e-02	ci left: 7.531613e-04	ci right 8.116017e-04	k: 2776	n:3550000
Cons ci ratio: 1.108008e-03	ci left: 7.786128e-01	ci right 7.794763e-01	k: 2765609	n:3550000
KS ci ratio: 1.296454e-01	ci left: 2.407712e-04	ci right 2.744190e-04	k: 913	n:3550000
CILP2   3550000 perm   6585 sec   (539 perm/sec)   p_kst 2.571831e-04   p_cons 7.790448e-01   p_joint 7.819718e-04

Joint ci ratio: 7.418458e-02	ci left: 7.546295e-04	ci right 8.130413e-04	k: 2789	n:3560000
Cons ci ratio: 1.106410e-03	ci left: 7.786260e-01	ci right 7.794882e-01	k: 2773444	n:3560000
KS ci ratio: 1.292922e-01	ci left: 2.414538e-04	ci right 2.750981e-04	k: 918	n:3560000
CILP2   3560000 perm   6619 sec   (538 perm/sec)   p_kst 2.578652e-04   p_cons 7.790573e-01   p_joint 7.834270e-04

Joint ci ratio: 7.461413e-02	ci left: 7.437187e-04	ci right 8.016338e-04	k: 2757	n:3570000
Cons ci ratio: 1.104812e-03	ci left: 7.786415e-01	ci right 7.795025e-01	k: 2781288	n:3570000
KS ci ratio: 1.292219e-01	ci left: 2.410486e-04	ci right 2.746167e-04	k: 919	n:3570000
CILP2   3570000 perm   6653 sec   (537 perm/sec)   p_kst 2.574230e-04   p_cons 7.790723e-01   p_joint 7.722689e-04

Joint ci ratio: 7.457363e-02	ci left: 7.424636e-04	ci right 8.002482e-04	k: 2760	n:3580000
Cons ci ratio: 1.103342e-03	ci left: 7.786187e-01	ci right 7.794786e-01	k: 2788995	n:3580000
KS ci ratio: 1.290117e-01	ci left: 2.411862e-04	ci right 2.747147e-04	k: 922	n:3580000
CILP2   3580000 perm   6687 sec   (535 perm/sec)   p_kst 2.575419e-04   p_cons 7.790489e-01   p_joint 7.709497e-04

Joint ci ratio: 7.446582e-02	ci left: 7.425824e-04	ci right 8.002890e-04	k: 2768	n:3590000
Cons ci ratio: 1.101750e-03	ci left: 7.786365e-01	ci right 7.794951e-01	k: 2796847	n:3590000
KS ci ratio: 1.288722e-01	ci left: 2.410535e-04	ci right 2.745245e-04	k: 924	n:3590000
CILP2   3590000 perm   6720 sec   (534 perm/sec)   p_kst 2.573816e-04   p_cons 7.790660e-01   p_joint 7.710306e-04

Joint ci ratio: 7.438529e-02	ci left: 7.421553e-04	ci right 7.997637e-04	k: 2774	n:3600000
Cons ci ratio: 1.100255e-03	ci left: 7.786258e-01	ci right 7.794832e-01	k: 2804597	n:3600000
KS ci ratio: 1.287331e-01	ci left: 2.409215e-04	ci right 2.743354e-04	k: 926	n:3600000
CILP2   3600000 perm   6755 sec   (533 perm/sec)   p_kst 2.572222e-04   p_cons 7.790547e-01   p_joint 7.705556e-04

Joint ci ratio: 7.422493e-02	ci left: 7.433618e-04	ci right 8.009341e-04	k: 2786	n:3610000
Cons ci ratio: 1.098728e-03	ci left: 7.786271e-01	ci right 7.794833e-01	k: 2812390	n:3610000
KS ci ratio: 1.286637e-01	ci left: 2.405222e-04	ci right 2.738614e-04	k: 927	n:3610000
CILP2   3610000 perm   6789 sec   (532 perm/sec)   p_kst 2.567867e-04   p_cons 7.790554e-01   p_joint 7.717452e-04

Joint ci ratio: 7.466873e-02	ci left: 7.323619e-04	ci right 7.894361e-04	k: 2753	n:3620000
Cons ci ratio: 1.097202e-03	ci left: 7.786297e-01	ci right 7.794848e-01	k: 2820188	n:3620000
KS ci ratio: 1.285253e-01	ci left: 2.403925e-04	ci right 2.736751e-04	k: 929	n:3620000
CILP2   3620000 perm   6824 sec   (530 perm/sec)   p_kst 2.566298e-04   p_cons 7.790575e-01   p_joint 7.604972e-04

Joint ci ratio: 7.461460e-02	ci left: 7.314257e-04	ci right 7.883838e-04	k: 2757	n:3630000
Cons ci ratio: 1.095682e-03	ci left: 7.786329e-01	ci right 7.794868e-01	k: 2827988	n:3630000
KS ci ratio: 1.285254e-01	ci left: 2.397303e-04	ci right 2.729212e-04	k: 929	n:3630000
CILP2   3630000 perm   6860 sec   (529 perm/sec)   p_kst 2.559229e-04   p_cons 7.790601e-01   p_joint 7.595041e-04

Joint ci ratio: 7.445276e-02	ci left: 7.326515e-04	ci right 7.895760e-04	k: 2769	n:3640000
Cons ci ratio: 1.094100e-03	ci left: 7.786572e-01	ci right 7.795099e-01	k: 2835865	n:3640000
KS ci ratio: 1.283874e-01	ci left: 2.396035e-04	ci right 2.727385e-04	k: 931	n:3640000
CILP2   3640000 perm   6896 sec   (528 perm/sec)   p_kst 2.557692e-04   p_cons 7.790838e-01   p_joint 7.607143e-04

Joint ci ratio: 7.433209e-02	ci left: 7.330642e-04	ci right 7.899244e-04	k: 2778	n:3650000
Cons ci ratio: 1.092592e-03	ci left: 7.786603e-01	ci right 7.795118e-01	k: 2843665	n:3650000
KS ci ratio: 1.281813e-01	ci left: 2.397426e-04	ci right 2.728395e-04	k: 934	n:3650000
CILP2   3650000 perm   6931 sec   (527 perm/sec)   p_kst 2.558904e-04   p_cons 7.790863e-01   p_joint 7.610959e-04

Joint ci ratio: 7.418538e-02	ci left: 7.340109e-04	ci right 7.908274e-04	k: 2789	n:3660000
Cons ci ratio: 1.091126e-03	ci left: 7.786525e-01	ci right 7.795028e-01	k: 2851425	n:3660000
KS ci ratio: 1.279079e-01	ci left: 2.401454e-04	ci right 2.732220e-04	k: 938	n:3660000
CILP2   3660000 perm   6966 sec   (525 perm/sec)   p_kst 2.562842e-04   p_cons 7.790779e-01   p_joint 7.620219e-04

Joint ci ratio: 7.429212e-02	ci left: 7.298715e-04	ci right 7.864523e-04	k: 2781	n:3670000
Cons ci ratio: 1.089699e-03	ci left: 7.786338e-01	ci right 7.794830e-01	k: 2859145	n:3670000
KS ci ratio: 1.276363e-01	ci left: 2.405462e-04	ci right 2.736022e-04	k: 942	n:3670000
CILP2   3670000 perm   7002 sec   (524 perm/sec)   p_kst 2.566757e-04   p_cons 7.790586e-01   p_joint 7.577657e-04

Joint ci ratio: 7.435910e-02	ci left: 7.265546e-04	ci right 7.829314e-04	k: 2776	n:3680000
Cons ci ratio: 1.088263e-03	ci left: 7.786200e-01	ci right 7.794681e-01	k: 2866883	n:3680000
KS ci ratio: 1.276364e-01	ci left: 2.398925e-04	ci right 2.728587e-04	k: 942	n:3680000
CILP2   3680000 perm   7037 sec   (523 perm/sec)   p_kst 2.559783e-04   p_cons 7.790443e-01   p_joint 7.543478e-04

Joint ci ratio: 7.430564e-02	ci left: 7.256495e-04	ci right 7.819138e-04	k: 2780	n:3690000
Cons ci ratio: 1.086774e-03	ci left: 7.786248e-01	ci right 7.794717e-01	k: 2874689	n:3690000
KS ci ratio: 1.276364e-01	ci left: 2.392424e-04	ci right 2.721193e-04	k: 942	n:3690000
CILP2   3690000 perm   7073 sec   (522 perm/sec)   p_kst 2.552846e-04   p_cons 7.790485e-01   p_joint 7.533875e-04

Joint ci ratio: 7.421231e-02	ci left: 7.255451e-04	ci right 7.817275e-04	k: 2787	n:3700000
Cons ci ratio: 1.085299e-03	ci left: 7.786269e-01	ci right 7.794727e-01	k: 2882485	n:3700000
KS ci ratio: 1.274339e-01	ci left: 2.393807e-04	ci right 2.722205e-04	k: 945	n:3700000
CILP2   3700000 perm   7108 sec   (521 perm/sec)   p_kst 2.554054e-04   p_cons 7.790500e-01   p_joint 7.532432e-04

Joint ci ratio: 7.409280e-02	ci left: 7.259703e-04	ci right 7.820913e-04	k: 2796	n:3710000
Cons ci ratio: 1.083767e-03	ci left: 7.786492e-01	ci right 7.794938e-01	k: 2890356	n:3710000
KS ci ratio: 1.271653e-01	ci left: 2.397793e-04	ci right 2.725992e-04	k: 949	n:3710000
CILP2   3710000 perm   7143 sec   (519 perm/sec)   p_kst 2.557951e-04   p_cons 7.790717e-01   p_joint 7.536388e-04

Joint ci ratio: 7.400026e-02	ci left: 7.258657e-04	ci right 7.819054e-04	k: 2803	n:3720000
Cons ci ratio: 1.082348e-03	ci left: 7.786377e-01	ci right 7.794812e-01	k: 2898102	n:3720000
KS ci ratio: 1.270984e-01	ci left: 2.393950e-04	ci right 2.721438e-04	k: 950	n:3720000
CILP2   3720000 perm   7180 sec   (518 perm/sec)   p_kst 2.553763e-04   p_cons 7.790597e-01   p_joint 7.534946e-04

Joint ci ratio: 7.457479e-02	ci left: 7.126054e-04	ci right 7.680671e-04	k: 2760	n:3730000
Cons ci ratio: 1.080876e-03	ci left: 7.786446e-01	ci right 7.794869e-01	k: 2905916	n:3730000
KS ci ratio: 1.270317e-01	ci left: 2.390128e-04	ci right 2.716908e-04	k: 951	n:3730000
CILP2   3730000 perm   7216 sec   (517 perm/sec)   p_kst 2.549598e-04   p_cons 7.790660e-01   p_joint 7.399464e-04

Joint ci ratio: 7.512140e-02	ci left: 7.002049e-04	ci right 7.551183e-04	k: 2720	n:3740000
Cons ci ratio: 1.079450e-03	ci left: 7.786388e-01	ci right 7.794800e-01	k: 2913683	n:3740000
KS ci ratio: 1.267656e-01	ci left: 2.394093e-04	ci right 2.720678e-04	k: 955	n:3740000
CILP2   3740000 perm   7251 sec   (516 perm/sec)   p_kst 2.553476e-04   p_cons 7.790596e-01   p_joint 7.272727e-04

Joint ci ratio: 7.551128e-02	ci left: 6.910115e-04	ci right 7.454975e-04	k: 2692	n:3750000
Cons ci ratio: 1.077983e-03	ci left: 7.786480e-01	ci right 7.794881e-01	k: 2921506	n:3750000
KS ci ratio: 1.265672e-01	ci left: 2.395455e-04	ci right 2.721676e-04	k: 958	n:3750000
CILP2   3750000 perm   7286 sec   (515 perm/sec)   p_kst 2.554667e-04   p_cons 7.790683e-01   p_joint 7.178667e-04

Joint ci ratio: 6.070687e-02	ci left: 1.074080e-03	ci right 1.141585e-03	k: 4164	n:3760000
Cons ci ratio: 1.006238e-03	ci left: 8.010379e-01	ci right 8.018446e-01	k: 3013420	n:3760000
KS ci ratio: 1.265013e-01	ci left: 2.391660e-04	ci right 2.717182e-04	k: 959	n:3760000
CILP2   3760000 perm   7322 sec   (514 perm/sec)   p_kst 2.550532e-04   p_cons 8.014415e-01   p_joint 1.107447e-03

Joint ci ratio: 6.064140e-02	ci left: 1.073582e-03	ci right 1.140981e-03	k: 4173	n:3770000
Cons ci ratio: 1.004874e-03	ci left: 8.010474e-01	ci right 8.018530e-01	k: 3021468	n:3770000
KS ci ratio: 1.263697e-01	ci left: 2.390453e-04	ci right 2.715447e-04	k: 961	n:3770000
CILP2   3770000 perm   7358 sec   (512 perm/sec)   p_kst 2.549072e-04   p_cons 8.014504e-01   p_joint 1.106897e-03

Joint ci ratio: 6.055441e-02	ci left: 1.073869e-03	ci right 1.141185e-03	k: 4185	n:3780000
Cons ci ratio: 1.003559e-03	ci left: 8.010433e-01	ci right 8.018478e-01	k: 3029465	n:3780000
KS ci ratio: 1.261731e-01	ci left: 2.391815e-04	ci right 2.716450e-04	k: 964	n:3780000
CILP2   3780000 perm   7395 sec   (511 perm/sec)   p_kst 2.550265e-04   p_cons 8.014458e-01   p_joint 1.107143e-03

Joint ci ratio: 6.050388e-02	ci left: 1.072854e-03	ci right 1.140049e-03	k: 4192	n:3790000
Cons ci ratio: 1.002201e-03	ci left: 8.010542e-01	ci right 8.018577e-01	k: 3037519	n:3790000
KS ci ratio: 1.259124e-01	ci left: 2.395725e-04	ci right 2.720170e-04	k: 968	n:3790000
CILP2   3790000 perm   7431 sec   (510 perm/sec)   p_kst 2.554090e-04   p_cons 8.014562e-01   p_joint 1.106069e-03

Joint ci ratio: 6.058357e-02	ci left: 1.067180e-03	ci right 1.134110e-03	k: 4181	n:3800000
Cons ci ratio: 1.000927e-03	ci left: 8.010401e-01	ci right 8.018426e-01	k: 3045478	n:3800000
KS ci ratio: 1.256533e-01	ci left: 2.399616e-04	ci right 2.723869e-04	k: 972	n:3800000
CILP2   3800000 perm   7467 sec   (509 perm/sec)   p_kst 2.557895e-04   p_cons 8.014416e-01   p_joint 1.100263e-03

Joint ci ratio: 6.054020e-02	ci left: 1.065930e-03	ci right 1.132732e-03	k: 4187	n:3810000
Cons ci ratio: 9.995934e-04	ci left: 8.010469e-01	ci right 8.018482e-01	k: 3053516	n:3810000
KS ci ratio: 1.255888e-01	ci left: 2.395860e-04	ci right 2.719426e-04	k: 973	n:3810000
CILP2   3810000 perm   7503 sec   (508 perm/sec)   p_kst 2.553806e-04   p_cons 8.014478e-01   p_joint 1.098950e-03

Joint ci ratio: 5.805378e-02	ci left: 1.157533e-03	ci right 1.226997e-03	k: 4553	n:3820000
Cons ci ratio: 9.982600e-04	ci left: 8.010551e-01	ci right 8.018554e-01	k: 3061560	n:3820000
KS ci ratio: 1.252677e-01	ci left: 2.402266e-04	ci right 2.725807e-04	k: 978	n:3820000
CILP2   3820000 perm   7541 sec   (507 perm/sec)   p_kst 2.560209e-04   p_cons 8.014555e-01   p_joint 1.191885e-03

Joint ci ratio: 5.797744e-02	ci left: 1.157598e-03	ci right 1.226972e-03	k: 4565	n:3830000
Cons ci ratio: 9.969245e-04	ci left: 8.010657e-01	ci right 8.018649e-01	k: 3069613	n:3830000
KS ci ratio: 1.250762e-01	ci left: 2.403582e-04	ci right 2.726768e-04	k: 981	n:3830000
CILP2   3830000 perm   7577 sec   (505 perm/sec)   p_kst 2.561358e-04   p_cons 8.014655e-01   p_joint 1.191906e-03

Joint ci ratio: 5.791407e-02	ci left: 1.157150e-03	ci right 1.226418e-03	k: 4575	n:3840000
Cons ci ratio: 9.956627e-04	ci left: 8.010543e-01	ci right 8.018525e-01	k: 3077582	n:3840000
KS ci ratio: 1.250126e-01	ci left: 2.399845e-04	ci right 2.722353e-04	k: 982	n:3840000
CILP2   3840000 perm   7615 sec   (504 perm/sec)   p_kst 2.557292e-04   p_cons 8.014536e-01   p_joint 1.191406e-03

Joint ci ratio: 5.786986e-02	ci left: 1.155936e-03	ci right 1.225077e-03	k: 4582	n:3850000
Cons ci ratio: 9.943141e-04	ci left: 8.010724e-01	ci right 8.018695e-01	k: 3085664	n:3850000
KS ci ratio: 1.250126e-01	ci left: 2.393612e-04	ci right 2.715282e-04	k: 982	n:3850000
CILP2   3850000 perm   7652 sec   (503 perm/sec)   p_kst 2.550649e-04   p_cons 8.014712e-01   p_joint 1.190130e-03

Joint ci ratio: 5.802863e-02	ci left: 1.146559e-03	ci right 1.215333e-03	k: 4557	n:3860000
Cons ci ratio: 9.930671e-04	ci left: 8.010595e-01	ci right 8.018556e-01	k: 3093627	n:3860000
KS ci ratio: 1.249491e-01	ci left: 2.389920e-04	ci right 2.710919e-04	k: 983	n:3860000
CILP2   3860000 perm   7689 sec   (502 perm/sec)   p_kst 2.546632e-04   p_cons 8.014578e-01   p_joint 1.180570e-03

Joint ci ratio: 5.796509e-02	ci left: 1.146142e-03	ci right 1.214814e-03	k: 4567	n:3870000
Cons ci ratio: 9.918191e-04	ci left: 8.010485e-01	ci right 8.018436e-01	k: 3101597	n:3870000
KS ci ratio: 1.249491e-01	ci left: 2.383745e-04	ci right 2.703914e-04	k: 983	n:3870000
CILP2   3870000 perm   7728 sec   (501 perm/sec)   p_kst 2.540052e-04   p_cons 8.014463e-01   p_joint 1.180103e-03

Joint ci ratio: 5.788910e-02	ci left: 1.146236e-03	ci right 1.214821e-03	k: 4579	n:3880000
Cons ci ratio: 9.905421e-04	ci left: 8.010483e-01	ci right 8.018424e-01	k: 3109609	n:3880000
KS ci ratio: 1.248857e-01	ci left: 2.380098e-04	ci right 2.699603e-04	k: 984	n:3880000
CILP2   3880000 perm   7765 sec   (500 perm/sec)   p_kst 2.536082e-04   p_cons 8.014456e-01   p_joint 1.180155e-03

Joint ci ratio: 5.788286e-02	ci left: 1.143543e-03	ci right 1.211959e-03	k: 4580	n:3890000
Cons ci ratio: 9.893084e-04	ci left: 8.010359e-01	ci right 8.018290e-01	k: 3117573	n:3890000
KS ci ratio: 1.245699e-01	ci left: 2.386432e-04	ci right 2.705917e-04	k: 989	n:3890000
CILP2   3890000 perm   7802 sec   (499 perm/sec)   p_kst 2.542416e-04   p_cons 8.014326e-01   p_joint 1.177378e-03

Joint ci ratio: 5.780720e-02	ci left: 1.143643e-03	ci right 1.211973e-03	k: 4592	n:3900000
Cons ci ratio: 9.880189e-04	ci left: 8.010430e-01	ci right 8.018350e-01	k: 3125613	n:3900000
KS ci ratio: 1.243816e-01	ci left: 2.387766e-04	ci right 2.706911e-04	k: 992	n:3900000
CILP2   3900000 perm   7839 sec   (498 perm/sec)   p_kst 2.543590e-04   p_cons 8.014392e-01   p_joint 1.177436e-03

Joint ci ratio: 5.780728e-02	ci left: 1.140718e-03	ci right 1.208873e-03	k: 4592	n:3910000
Cons ci ratio: 9.868231e-04	ci left: 8.010214e-01	ci right 8.018125e-01	k: 3133541	n:3910000
KS ci ratio: 1.241941e-01	ci left: 2.389093e-04	ci right 2.707899e-04	k: 995	n:3910000
CILP2   3910000 perm   7877 sec   (496 perm/sec)   p_kst 2.544757e-04   p_cons 8.014171e-01   p_joint 1.174425e-03

Joint ci ratio: 5.771310e-02	ci left: 1.141580e-03	ci right 1.209671e-03	k: 4607	n:3920000
Cons ci ratio: 9.855527e-04	ci left: 8.010254e-01	ci right 8.018155e-01	k: 3141569	n:3920000
KS ci ratio: 1.238217e-01	ci left: 2.397830e-04	ci right 2.716771e-04	k: 1001	n:3920000
CILP2   3920000 perm   7915 sec   (495 perm/sec)   p_kst 2.553571e-04   p_cons 8.014207e-01   p_joint 1.175255e-03

Joint ci ratio: 5.764434e-02	ci left: 1.141433e-03	ci right 1.209432e-03	k: 4618	n:3930000
Cons ci ratio: 9.843210e-04	ci left: 8.010185e-01	ci right 8.018076e-01	k: 3149554	n:3930000
KS ci ratio: 1.236367e-01	ci left: 2.399126e-04	ci right 2.717728e-04	k: 1004	n:3930000
CILP2   3930000 perm   7952 sec   (494 perm/sec)   p_kst 2.554707e-04   p_cons 8.014132e-01   p_joint 1.175064e-03

Joint ci ratio: 5.752609e-02	ci left: 1.143289e-03	ci right 1.211254e-03	k: 4637	n:3940000
Cons ci ratio: 9.830876e-04	ci left: 8.010136e-01	ci right 8.018017e-01	k: 3157547	n:3940000
KS ci ratio: 1.234526e-01	ci left: 2.400415e-04	ci right 2.718680e-04	k: 1007	n:3940000
CILP2   3940000 perm   7990 sec   (493 perm/sec)   p_kst 2.555838e-04   p_cons 8.014079e-01   p_joint 1.176904e-03

Joint ci ratio: 5.744563e-02	ci left: 1.143639e-03	ci right 1.211526e-03	k: 4650	n:3950000
Cons ci ratio: 9.818362e-04	ci left: 8.010161e-01	ci right 8.018032e-01	k: 3165569	n:3950000
KS ci ratio: 1.234526e-01	ci left: 2.394338e-04	ci right 2.711797e-04	k: 1007	n:3950000
CILP2   3950000 perm   8028 sec   (492 perm/sec)   p_kst 2.549367e-04   p_cons 8.014099e-01   p_joint 1.177215e-03

Joint ci ratio: 5.737167e-02	ci left: 1.143738e-03	ci right 1.211541e-03	k: 4662	n:3960000
Cons ci ratio: 9.805826e-04	ci left: 8.010209e-01	ci right 8.018070e-01	k: 3173600	n:3960000
KS ci ratio: 1.232084e-01	ci left: 2.398081e-04	ci right 2.715362e-04	k: 1011	n:3960000
CILP2   3960000 perm   8067 sec   (491 perm/sec)   p_kst 2.553030e-04   p_cons 8.014141e-01   p_joint 1.177273e-03

Joint ci ratio: 5.795325e-02	ci left: 1.117768e-03	ci right 1.184726e-03	k: 4569	n:3970000
Cons ci ratio: 9.793252e-04	ci left: 8.010284e-01	ci right 8.018135e-01	k: 3181642	n:3970000
KS ci ratio: 1.230262e-01	ci left: 2.399365e-04	ci right 2.716311e-04	k: 1014	n:3970000
CILP2   3970000 perm   8104 sec   (490 perm/sec)   p_kst 2.554156e-04   p_cons 8.014212e-01   p_joint 1.150882e-03

Joint ci ratio: 5.787099e-02	ci left: 1.118179e-03	ci right 1.185063e-03	k: 4582	n:3980000
Cons ci ratio: 9.780534e-04	ci left: 8.010422e-01	ci right 8.018262e-01	k: 3189709	n:3980000
KS ci ratio: 1.227242e-01	ci left: 2.405513e-04	ci right 2.722435e-04	k: 1019	n:3980000
CILP2   3980000 perm   8140 sec   (489 perm/sec)   p_kst 2.560302e-04   p_cons 8.014344e-01   p_joint 1.151256e-03

Joint ci ratio: 5.780797e-02	ci left: 1.117846e-03	ci right 1.184635e-03	k: 4592	n:3990000
Cons ci ratio: 9.768319e-04	ci left: 8.010411e-01	ci right 8.018242e-01	k: 3197717	n:3990000
KS ci ratio: 1.227243e-01	ci left: 2.399484e-04	ci right 2.715612e-04	k: 1019	n:3990000
CILP2   3990000 perm   8176 sec   (488 perm/sec)   p_kst 2.553885e-04   p_cons 8.014328e-01   p_joint 1.150877e-03

Joint ci ratio: 5.775143e-02	ci left: 1.117269e-03	ci right 1.183956e-03	k: 4601	n:4000000
Cons ci ratio: 9.756210e-04	ci left: 8.010380e-01	ci right 8.018201e-01	k: 3205717	n:4000000
KS ci ratio: 1.223648e-01	ci left: 2.408026e-04	ci right 2.724282e-04	k: 1025	n:4000000
CILP2   4000000 perm   8213 sec   (487 perm/sec)   p_kst 2.562500e-04   p_cons 8.014292e-01   p_joint 1.150250e-03

Joint ci ratio: 5.767628e-02	ci left: 1.117432e-03	ci right 1.184039e-03	k: 4613	n:4010000
Cons ci ratio: 9.744185e-04	ci left: 8.010336e-01	ci right 8.018148e-01	k: 3213712	n:4010000
KS ci ratio: 1.221863e-01	ci left: 2.409273e-04	ci right 2.725199e-04	k: 1028	n:4010000
CILP2   4010000 perm   8249 sec   (486 perm/sec)   p_kst 2.563591e-04   p_cons 8.014244e-01   p_joint 1.150374e-03

Joint ci ratio: 5.758896e-02	ci left: 1.118085e-03	ci right 1.184627e-03	k: 4627	n:4020000
Cons ci ratio: 9.731748e-04	ci left: 8.010443e-01	ci right 8.018244e-01	k: 3221767	n:4020000
KS ci ratio: 1.220086e-01	ci left: 2.410515e-04	ci right 2.726110e-04	k: 1031	n:4020000
CILP2   4020000 perm   8286 sec   (485 perm/sec)   p_kst 2.564677e-04   p_cons 8.014346e-01   p_joint 1.150995e-03

Joint ci ratio: 5.751444e-02	ci left: 1.118246e-03	ci right 1.184708e-03	k: 4639	n:4030000
Cons ci ratio: 9.719737e-04	ci left: 8.010424e-01	ci right 8.018216e-01	k: 3229772	n:4030000
KS ci ratio: 1.219495e-01	ci left: 2.406939e-04	ci right 2.721903e-04	k: 1032	n:4030000
CILP2   4030000 perm   8323 sec   (484 perm/sec)   p_kst 2.560794e-04   p_cons 8.014323e-01   p_joint 1.151117e-03

Joint ci ratio: 5.742785e-02	ci left: 1.118893e-03	ci right 1.185290e-03	k: 4653	n:4040000
Cons ci ratio: 9.707454e-04	ci left: 8.010510e-01	ci right 8.018292e-01	k: 3237819	n:4040000
KS ci ratio: 1.217141e-01	ci left: 2.410581e-04	ci right 2.725368e-04	k: 1036	n:4040000
CILP2   4040000 perm   8361 sec   (483 perm/sec)   p_kst 2.564356e-04   p_cons 8.014403e-01   p_joint 1.151733e-03

Joint ci ratio: 5.792220e-02	ci left: 1.096905e-03	ci right 1.162577e-03	k: 4574	n:4050000
Cons ci ratio: 9.695510e-04	ci left: 8.010499e-01	ci right 8.018272e-01	k: 3245827	n:4050000
KS ci ratio: 1.215969e-01	ci left: 2.409416e-04	ci right 2.723727e-04	k: 1038	n:4050000
CILP2   4050000 perm   8398 sec   (482 perm/sec)   p_kst 2.562963e-04   p_cons 8.014388e-01   p_joint 1.129383e-03

Joint ci ratio: 5.787164e-02	ci left: 1.096145e-03	ci right 1.161712e-03	k: 4582	n:4060000
Cons ci ratio: 9.683498e-04	ci left: 8.010525e-01	ci right 8.018288e-01	k: 3253850	n:4060000
KS ci ratio: 1.214801e-01	ci left: 2.408258e-04	ci right 2.722094e-04	k: 1040	n:4060000
CILP2   4060000 perm   8436 sec   (481 perm/sec)   p_kst 2.561576e-04   p_cons 8.014409e-01   p_joint 1.128571e-03

Joint ci ratio: 5.779602e-02	ci left: 1.096358e-03	ci right 1.161849e-03	k: 4594	n:4070000
Cons ci ratio: 9.670873e-04	ci left: 8.010767e-01	ci right 8.018521e-01	k: 3261961	n:4070000
KS ci ratio: 1.213635e-01	ci left: 2.407106e-04	ci right 2.720469e-04	k: 1042	n:4070000
CILP2   4070000 perm   8473 sec   (480 perm/sec)   p_kst 2.560197e-04   p_cons 8.014646e-01   p_joint 1.128747e-03

Joint ci ratio: 5.772697e-02	ci left: 1.096328e-03	ci right 1.161736e-03	k: 4605	n:4080000
Cons ci ratio: 9.659123e-04	ci left: 8.010736e-01	ci right 8.018480e-01	k: 3269961	n:4080000
KS ci ratio: 1.210159e-01	ci left: 2.415466e-04	ci right 2.728953e-04	k: 1048	n:4080000
CILP2   4080000 perm   8511 sec   (479 perm/sec)   p_kst 2.568627e-04   p_cons 8.014610e-01   p_joint 1.128676e-03

Joint ci ratio: 5.765191e-02	ci left: 1.096539e-03	ci right 1.161872e-03	k: 4617	n:4090000
Cons ci ratio: 9.647053e-04	ci left: 8.010825e-01	ci right 8.018559e-01	k: 3278010	n:4090000
KS ci ratio: 1.209007e-01	ci left: 2.414303e-04	ci right 2.727318e-04	k: 1050	n:4090000
CILP2   4090000 perm   8549 sec   (478 perm/sec)   p_kst 2.567237e-04   p_cons 8.014694e-01   p_joint 1.128851e-03

Joint ci ratio: 5.756470e-02	ci left: 1.097230e-03	ci right 1.162502e-03	k: 4631	n:4100000
Cons ci ratio: 9.635803e-04	ci left: 8.010657e-01	ci right 8.018382e-01	k: 3285954	n:4100000
KS ci ratio: 1.206713e-01	ci left: 2.417875e-04	ci right 2.730717e-04	k: 1054	n:4100000
CILP2   4100000 perm   8587 sec   (477 perm/sec)   p_kst 2.570732e-04   p_cons 8.014522e-01   p_joint 1.129512e-03

Joint ci ratio: 5.747789e-02	ci left: 1.097918e-03	ci right 1.163129e-03	k: 4645	n:4110000
Cons ci ratio: 9.623739e-04	ci left: 8.010773e-01	ci right 8.018488e-01	k: 3294014	n:4110000
KS ci ratio: 1.203295e-01	ci left: 2.426151e-04	ci right 2.739111e-04	k: 1060	n:4110000
CILP2   4110000 perm   8626 sec   (476 perm/sec)   p_kst 2.579075e-04   p_cons 8.014633e-01   p_joint 1.130170e-03

Joint ci ratio: 5.738530e-02	ci left: 1.098841e-03	ci right 1.163999e-03	k: 4660	n:4120000
Cons ci ratio: 9.612196e-04	ci left: 8.010730e-01	ci right 8.018436e-01	k: 3302009	n:4120000
KS ci ratio: 1.200470e-01	ci left: 2.432033e-04	ci right 2.744963e-04	k: 1065	n:4120000
CILP2   4120000 perm   8667 sec   (475 perm/sec)   p_kst 2.584951e-04   p_cons 8.014585e-01   p_joint 1.131068e-03

Joint ci ratio: 5.734844e-02	ci left: 1.097613e-03	ci right 1.162654e-03	k: 4666	n:4130000
Cons ci ratio: 9.600936e-04	ci left: 8.010607e-01	ci right 8.018304e-01	k: 3309971	n:4130000
KS ci ratio: 1.200470e-01	ci left: 2.426145e-04	ci right 2.738317e-04	k: 1065	n:4130000
CILP2   4130000 perm   8708 sec   (474 perm/sec)   p_kst 2.578692e-04   p_cons 8.014458e-01   p_joint 1.129782e-03

Joint ci ratio: 5.729324e-02	ci left: 1.097104e-03	ci right 1.162051e-03	k: 4675	n:4140000
Cons ci ratio: 9.588733e-04	ci left: 8.010811e-01	ci right 8.018499e-01	k: 3318068	n:4140000
KS ci ratio: 1.199346e-01	ci left: 2.424970e-04	ci right 2.736679e-04	k: 1067	n:4140000
CILP2   4140000 perm   8747 sec   (473 perm/sec)   p_kst 2.577295e-04   p_cons 8.014657e-01   p_joint 1.129227e-03

Joint ci ratio: 5.767114e-02	ci left: 1.079973e-03	ci right 1.144341e-03	k: 4614	n:4150000
Cons ci ratio: 9.577055e-04	ci left: 8.010855e-01	ci right 8.018533e-01	k: 3326099	n:4150000
KS ci ratio: 1.197106e-01	ci left: 2.428477e-04	ci right 2.740011e-04	k: 1071	n:4150000
CILP2   4150000 perm   8785 sec   (472 perm/sec)   p_kst 2.580723e-04   p_cons 8.014696e-01   p_joint 1.111807e-03

Joint ci ratio: 5.759007e-02	ci left: 1.080457e-03	ci right 1.144760e-03	k: 4627	n:4160000
Cons ci ratio: 9.565203e-04	ci left: 8.010971e-01	ci right 8.018640e-01	k: 3334160	n:4160000
KS ci ratio: 1.195434e-01	ci left: 2.429635e-04	ci right 2.740852e-04	k: 1074	n:4160000
CILP2   4160000 perm   8823 sec   (471 perm/sec)   p_kst 2.581731e-04   p_cons 8.014808e-01   p_joint 1.112260e-03

Joint ci ratio: 5.867914e-02	ci left: 1.037690e-03	ci right 1.100656e-03	k: 4457	n:4170000
Cons ci ratio: 9.554121e-04	ci left: 8.010844e-01	ci right 8.018504e-01	k: 3342120	n:4170000
KS ci ratio: 1.194324e-01	ci left: 2.428461e-04	ci right 2.739219e-04	k: 1076	n:4170000
CILP2   4170000 perm   8863 sec   (471 perm/sec)   p_kst 2.580336e-04   p_cons 8.014676e-01   p_joint 1.068825e-03

Joint ci ratio: 5.860031e-02	ci left: 1.038036e-03	ci right 1.100936e-03	k: 4469	n:4180000
Cons ci ratio: 9.542332e-04	ci left: 8.010967e-01	ci right 8.018617e-01	k: 3350184	n:4180000
KS ci ratio: 1.191561e-01	ci left: 2.434256e-04	ci right 2.744984e-04	k: 1081	n:4180000
CILP2   4180000 perm   8902 sec   (470 perm/sec)   p_kst 2.586124e-04   p_cons 8.014794e-01   p_joint 1.069139e-03

Joint ci ratio: 5.946563e-02	ci left: 1.005225e-03	ci right 1.067067e-03	k: 4340	n:4190000
Cons ci ratio: 9.530644e-04	ci left: 8.011070e-01	ci right 8.018711e-01	k: 3358240	n:4190000
KS ci ratio: 1.190461e-01	ci left: 2.433078e-04	ci right 2.743348e-04	k: 1083	n:4190000
CILP2   4190000 perm   8941 sec   (469 perm/sec)   p_kst 2.584726e-04   p_cons 8.014893e-01   p_joint 1.035800e-03

Joint ci ratio: 5.940409e-02	ci left: 1.004943e-03	ci right 1.066701e-03	k: 4349	n:4200000
Cons ci ratio: 9.519006e-04	ci left: 8.011170e-01	ci right 8.018802e-01	k: 3366295	n:4200000
KS ci ratio: 1.187725e-01	ci left: 2.438835e-04	ci right 2.749075e-04	k: 1088	n:4200000
CILP2   4200000 perm   8980 sec   (468 perm/sec)   p_kst 2.590476e-04   p_cons 8.014988e-01   p_joint 1.035476e-03

Joint ci ratio: 5.455333e-02	ci left: 1.191519e-03	ci right 1.258576e-03	k: 5156	n:4210000
Cons ci ratio: 9.507850e-04	ci left: 8.011122e-01	ci right 8.018745e-01	k: 3374288	n:4210000
KS ci ratio: 1.178559e-01	ci left: 2.472228e-04	ci right 2.784119e-04	k: 1105	n:4210000
CILP2   4210000 perm   9019 sec   (467 perm/sec)   p_kst 2.624703e-04   p_cons 8.014936e-01   p_joint 1.224703e-03

Joint ci ratio: 5.451110e-02	ci left: 1.190566e-03	ci right 1.257515e-03	k: 5164	n:4220000
Cons ci ratio: 9.496478e-04	ci left: 8.011160e-01	ci right 8.018774e-01	k: 3382317	n:4220000
KS ci ratio: 1.177495e-01	ci left: 2.470969e-04	ci right 2.782401e-04	k: 1107	n:4220000
CILP2   4220000 perm   9058 sec   (466 perm/sec)   p_kst 2.623223e-04   p_cons 8.014969e-01   p_joint 1.223697e-03

Joint ci ratio: 5.445315e-02	ci left: 1.190316e-03	ci right 1.257178e-03	k: 5175	n:4230000
Cons ci ratio: 9.485563e-04	ci left: 8.011058e-01	ci right 8.018663e-01	k: 3390287	n:4230000
KS ci ratio: 1.175904e-01	ci left: 2.472011e-04	ci right 2.783124e-04	k: 1110	n:4230000
CILP2   4230000 perm   9098 sec   (465 perm/sec)   p_kst 2.624113e-04   p_cons 8.014863e-01   p_joint 1.223404e-03

Joint ci ratio: 5.437440e-02	ci left: 1.190998e-03	ci right 1.257799e-03	k: 5190	n:4240000
Cons ci ratio: 9.474377e-04	ci left: 8.011061e-01	ci right 8.018657e-01	k: 3398301	n:4240000
KS ci ratio: 1.173793e-01	ci left: 2.475337e-04	ci right 2.786271e-04	k: 1114	n:4240000
CILP2   4240000 perm   9137 sec   (464 perm/sec)   p_kst 2.627358e-04   p_cons 8.014861e-01   p_joint 1.224057e-03

Joint ci ratio: 5.439022e-02	ci left: 1.187500e-03	ci right 1.254124e-03	k: 5187	n:4250000
Cons ci ratio: 9.463174e-04	ci left: 8.011082e-01	ci right 8.018669e-01	k: 3406323	n:4250000
KS ci ratio: 1.172742e-01	ci left: 2.474081e-04	ci right 2.784559e-04	k: 1116	n:4250000
CILP2   4250000 perm   9177 sec   (463 perm/sec)   p_kst 2.625882e-04   p_cons 8.014878e-01   p_joint 1.220471e-03

Joint ci ratio: 5.435359e-02	ci left: 1.186333e-03	ci right 1.252846e-03	k: 5194	n:4260000
Cons ci ratio: 9.451767e-04	ci left: 8.011186e-01	ci right 8.018763e-01	k: 3414380	n:4260000
KS ci ratio: 1.172217e-01	ci left: 2.470552e-04	ci right 2.780439e-04	k: 1117	n:4260000
CILP2   4260000 perm   9217 sec   (462 perm/sec)   p_kst 2.622066e-04   p_cons 8.014977e-01   p_joint 1.219249e-03

Joint ci ratio: 5.429615e-02	ci left: 1.186096e-03	ci right 1.252523e-03	k: 5205	n:4270000
Cons ci ratio: 9.440568e-04	ci left: 8.011232e-01	ci right 8.018801e-01	k: 3422413	n:4270000
KS ci ratio: 1.171694e-01	ci left: 2.467039e-04	ci right 2.776338e-04	k: 1118	n:4270000
CILP2   4270000 perm   9257 sec   (461 perm/sec)   p_kst 2.618267e-04   p_cons 8.015019e-01   p_joint 1.218970e-03

Joint ci ratio: 5.421288e-02	ci left: 1.187012e-03	ci right 1.253385e-03	k: 5221	n:4280000
Cons ci ratio: 9.429533e-04	ci left: 8.011237e-01	ci right 8.018797e-01	k: 3430428	n:4280000
KS ci ratio: 1.170126e-01	ci left: 2.468079e-04	ci right 2.777066e-04	k: 1121	n:4280000
CILP2   4280000 perm   9298 sec   (460 perm/sec)   p_kst 2.619159e-04   p_cons 8.015019e-01   p_joint 1.219860e-03

Joint ci ratio: 5.417143e-02	ci left: 1.186085e-03	ci right 1.252354e-03	k: 5229	n:4290000
Cons ci ratio: 9.418964e-04	ci left: 8.011096e-01	ci right 8.018648e-01	k: 3438381	n:4290000
KS ci ratio: 1.169605e-01	ci left: 2.464589e-04	ci right 2.772991e-04	k: 1122	n:4290000
CILP2   4290000 perm   9338 sec   (459 perm/sec)   p_kst 2.615385e-04   p_cons 8.014874e-01   p_joint 1.218881e-03

Joint ci ratio: 5.409906e-02	ci left: 1.186538e-03	ci right 1.252741e-03	k: 5243	n:4300000
Cons ci ratio: 9.408149e-04	ci left: 8.011052e-01	ci right 8.018595e-01	k: 3446375	n:4300000
KS ci ratio: 1.168046e-01	ci left: 2.465630e-04	ci right 2.773723e-04	k: 1125	n:4300000
CILP2   4300000 perm   9378 sec   (459 perm/sec)   p_kst 2.616279e-04   p_cons 8.014826e-01   p_joint 1.219302e-03

Joint ci ratio: 5.407333e-02	ci left: 1.184930e-03	ci right 1.251010e-03	k: 5248	n:4310000
Cons ci ratio: 9.396973e-04	ci left: 8.011143e-01	ci right 8.018677e-01	k: 3454427	n:4310000
KS ci ratio: 1.167528e-01	ci left: 2.462162e-04	ci right 2.769676e-04	k: 1126	n:4310000
CILP2   4310000 perm   9417 sec   (458 perm/sec)   p_kst 2.612529e-04   p_cons 8.014912e-01   p_joint 1.217633e-03

Joint ci ratio: 5.419241e-02	ci left: 1.176935e-03	ci right 1.242718e-03	k: 5225	n:4320000
Cons ci ratio: 9.386377e-04	ci left: 8.011050e-01	ci right 8.018575e-01	k: 3462400	n:4320000
KS ci ratio: 1.165977e-01	ci left: 2.463204e-04	ci right 2.770411e-04	k: 1129	n:4320000
CILP2   4320000 perm   9458 sec   (457 perm/sec)   p_kst 2.613426e-04   p_cons 8.014815e-01   p_joint 1.209491e-03

Joint ci ratio: 5.414065e-02	ci left: 1.176495e-03	ci right 1.242189e-03	k: 5235	n:4330000
Cons ci ratio: 9.375667e-04	ci left: 8.011009e-01	ci right 8.018525e-01	k: 3470395	n:4330000
KS ci ratio: 1.162893e-01	ci left: 2.470969e-04	ci right 2.778273e-04	k: 1135	n:4330000
CILP2   4330000 perm   9498 sec   (456 perm/sec)   p_kst 2.621247e-04   p_cons 8.014769e-01   p_joint 1.209007e-03

Joint ci ratio: 5.409420e-02	ci left: 1.175830e-03	ci right 1.241429e-03	k: 5244	n:4340000
Cons ci ratio: 9.364851e-04	ci left: 8.011016e-01	ci right 8.018524e-01	k: 3478411	n:4340000
KS ci ratio: 1.162894e-01	ci left: 2.465275e-04	ci right 2.771872e-04	k: 1135	n:4340000
CILP2   4340000 perm   9538 sec   (455 perm/sec)   p_kst 2.615207e-04   p_cons 8.014772e-01   p_joint 1.208295e-03

Joint ci ratio: 5.405302e-02	ci left: 1.174941e-03	ci right 1.240439e-03	k: 5252	n:4350000
Cons ci ratio: 9.353903e-04	ci left: 8.011081e-01	ci right 8.018580e-01	k: 3486452	n:4350000
KS ci ratio: 1.162382e-01	ci left: 2.461840e-04	ci right 2.767865e-04	k: 1136	n:4350000
CILP2   4350000 perm   9578 sec   (454 perm/sec)   p_kst 2.611494e-04   p_cons 8.014832e-01   p_joint 1.207356e-03

Joint ci ratio: 5.398112e-02	ci left: 1.175413e-03	ci right 1.240848e-03	k: 5266	n:4360000
Cons ci ratio: 9.343034e-04	ci left: 8.011131e-01	ci right 8.018622e-01	k: 3494487	n:4360000
KS ci ratio: 1.160343e-01	ci left: 2.465101e-04	ci right 2.770958e-04	k: 1140	n:4360000
CILP2   4360000 perm   9619 sec   (453 perm/sec)   p_kst 2.614679e-04   p_cons 8.014878e-01   p_joint 1.207798e-03

Joint ci ratio: 5.391973e-02	ci left: 1.175433e-03	ci right 1.240792e-03	k: 5278	n:4370000
Cons ci ratio: 9.332324e-04	ci left: 8.011140e-01	ci right 8.018622e-01	k: 3502504	n:4370000
KS ci ratio: 1.159327e-01	ci left: 2.463904e-04	ci right 2.769326e-04	k: 1142	n:4370000
CILP2   4370000 perm   9660 sec   (452 perm/sec)   p_kst 2.613272e-04   p_cons 8.014883e-01   p_joint 1.207780e-03

Joint ci ratio: 5.386365e-02	ci left: 1.175227e-03	ci right 1.240504e-03	k: 5289	n:4380000
Cons ci ratio: 9.321008e-04	ci left: 8.011369e-01	ci right 8.018842e-01	k: 3510617	n:4380000
KS ci ratio: 1.157304e-01	ci left: 2.467147e-04	ci right 2.772400e-04	k: 1146	n:4380000
CILP2   4380000 perm   9701 sec   (451 perm/sec)   p_kst 2.616438e-04   p_cons 8.015107e-01   p_joint 1.207534e-03

Joint ci ratio: 5.396083e-02	ci left: 1.168280e-03	ci right 1.233292e-03	k: 5270	n:4390000
Cons ci ratio: 9.310174e-04	ci left: 8.011446e-01	ci right 8.018910e-01	k: 3518664	n:4390000
KS ci ratio: 1.155291e-01	ci left: 2.470375e-04	ci right 2.775460e-04	k: 1150	n:4390000
CILP2   4390000 perm   9743 sec   (451 perm/sec)   p_kst 2.619590e-04   p_cons 8.015180e-01   p_joint 1.200456e-03

Joint ci ratio: 5.469299e-02	ci left: 1.134238e-03	ci right 1.198239e-03	k: 5130	n:4400000
Cons ci ratio: 9.299542e-04	ci left: 8.011466e-01	ci right 8.018921e-01	k: 3526686	n:4400000
KS ci ratio: 1.152790e-01	ci left: 2.475796e-04	ci right 2.780844e-04	k: 1155	n:4400000
CILP2   4400000 perm   9784 sec   (450 perm/sec)   p_kst 2.625000e-04   p_cons 8.015195e-01   p_joint 1.165909e-03

Joint ci ratio: 5.463446e-02	ci left: 1.134126e-03	ci right 1.198051e-03	k: 5141	n:4410000
Cons ci ratio: 9.289232e-04	ci left: 8.011388e-01	ci right 8.018835e-01	k: 3534665	n:4410000
KS ci ratio: 1.151297e-01	ci left: 2.476789e-04	ci right 2.781537e-04	k: 1158	n:4410000
CILP2   4410000 perm   9825 sec   (449 perm/sec)   p_kst 2.625850e-04   p_cons 8.015113e-01   p_joint 1.165760e-03

Joint ci ratio: 5.553382e-02	ci left: 1.094744e-03	ci right 1.157497e-03	k: 4976	n:4420000
Cons ci ratio: 9.278646e-04	ci left: 8.011416e-01	ci right 8.018856e-01	k: 3542691	n:4420000
KS ci ratio: 1.150800e-01	ci left: 2.473382e-04	ci right 2.777571e-04	k: 1159	n:4420000
CILP2   4420000 perm   9866 sec   (448 perm/sec)   p_kst 2.622172e-04   p_cons 8.015138e-01   p_joint 1.125792e-03

Joint ci ratio: 5.543918e-02	ci left: 1.096057e-03	ci right 1.158774e-03	k: 4993	n:4430000
Cons ci ratio: 9.268254e-04	ci left: 8.011391e-01	ci right 8.018822e-01	k: 3550693	n:4430000
KS ci ratio: 1.148328e-01	ci left: 2.478761e-04	ci right 2.782912e-04	k: 1164	n:4430000
CILP2   4430000 perm   9906 sec   (447 perm/sec)   p_kst 2.627540e-04   p_cons 8.015108e-01   p_joint 1.127088e-03

Joint ci ratio: 5.560111e-02	ci left: 1.087147e-03	ci right 1.149542e-03	k: 4964	n:4440000
Cons ci ratio: 9.257629e-04	ci left: 8.011458e-01	ci right 8.018880e-01	k: 3558736	n:4440000
KS ci ratio: 1.146361e-01	ci left: 2.481929e-04	ci right 2.785912e-04	k: 1168	n:4440000
CILP2   4440000 perm   9948 sec   (446 perm/sec)   p_kst 2.630631e-04   p_cons 8.015171e-01   p_joint 1.118018e-03

Joint ci ratio: 5.556198e-02	ci left: 1.086255e-03	ci right 1.148554e-03	k: 4971	n:4450000
Cons ci ratio: 9.247555e-04	ci left: 8.011347e-01	ci right 8.018761e-01	k: 3566700	n:4450000
KS ci ratio: 1.146362e-01	ci left: 2.476352e-04	ci right 2.779651e-04	k: 1168	n:4450000
CILP2   4450000 perm   9990 sec   (445 perm/sec)   p_kst 2.624719e-04   p_cons 8.015056e-01   p_joint 1.117079e-03

Joint ci ratio: 5.549504e-02	ci left: 1.086473e-03	ci right 1.148707e-03	k: 4983	n:4460000
Cons ci ratio: 9.237033e-04	ci left: 8.011403e-01	ci right 8.018809e-01	k: 3574738	n:4460000
KS ci ratio: 1.145872e-01	ci left: 2.472977e-04	ci right 2.775726e-04	k: 1169	n:4460000
CILP2   4460000 perm   10032 sec   (445 perm/sec)   p_kst 2.621076e-04   p_cons 8.015108e-01   p_joint 1.117265e-03

Joint ci ratio: 5.546727e-02	ci left: 1.085145e-03	ci right 1.147271e-03	k: 4988	n:4470000
Cons ci ratio: 9.226994e-04	ci left: 8.011304e-01	ci right 8.018701e-01	k: 3582707	n:4470000
KS ci ratio: 1.145383e-01	ci left: 2.469618e-04	ci right 2.771817e-04	k: 1170	n:4470000
CILP2   4470000 perm   10072 sec   (444 perm/sec)   p_kst 2.617450e-04   p_cons 8.015004e-01   p_joint 1.115884e-03

Joint ci ratio: 5.541732e-02	ci left: 1.084704e-03	ci right 1.146747e-03	k: 4997	n:4480000
Cons ci ratio: 9.216186e-04	ci left: 8.011482e-01	ci right 8.018871e-01	k: 3590800	n:4480000
KS ci ratio: 1.144894e-01	ci left: 2.466273e-04	ci right 2.767926e-04	k: 1171	n:4480000
CILP2   4480000 perm   10114 sec   (443 perm/sec)   p_kst 2.613839e-04   p_cons 8.015179e-01   p_joint 1.115402e-03

Joint ci ratio: 5.533985e-02	ci left: 1.085363e-03	ci right 1.147354e-03	k: 5011	n:4490000
Cons ci ratio: 9.206015e-04	ci left: 8.011452e-01	ci right 8.018833e-01	k: 3598800	n:4490000
KS ci ratio: 1.143432e-01	ci left: 2.467271e-04	ci right 2.768634e-04	k: 1174	n:4490000
CILP2   4490000 perm   10155 sec   (442 perm/sec)   p_kst 2.614699e-04   p_cons 8.015145e-01   p_joint 1.116036e-03

Joint ci ratio: 5.525720e-02	ci left: 1.086239e-03	ci right 1.148184e-03	k: 5026	n:4500000
Cons ci ratio: 9.195813e-04	ci left: 8.011445e-01	ci right 8.018818e-01	k: 3606810	n:4500000
KS ci ratio: 1.141006e-01	ci left: 2.472582e-04	ci right 2.773910e-04	k: 1179	n:4500000
CILP2   4500000 perm   10197 sec   (441 perm/sec)   p_kst 2.620000e-04   p_cons 8.015133e-01   p_joint 1.116889e-03

Joint ci ratio: 5.530134e-02	ci left: 1.082081e-03	ci right 1.143840e-03	k: 5018	n:4510000
Cons ci ratio: 9.185217e-04	ci left: 8.011586e-01	ci right 8.018951e-01	k: 3614887	n:4510000
KS ci ratio: 1.139559e-01	ci left: 2.473561e-04	ci right 2.774601e-04	k: 1182	n:4510000
CILP2   4510000 perm   10240 sec   (440 perm/sec)   p_kst 2.620843e-04   p_cons 8.015271e-01   p_joint 1.112639e-03

Joint ci ratio: 5.522984e-02	ci left: 1.082523e-03	ci right 1.144225e-03	k: 5031	n:4520000
Cons ci ratio: 9.175429e-04	ci left: 8.011459e-01	ci right 8.018816e-01	k: 3622843	n:4520000
KS ci ratio: 1.138597e-01	ci left: 2.472388e-04	ci right 2.773013e-04	k: 1184	n:4520000
CILP2   4520000 perm   10282 sec   (440 perm/sec)   p_kst 2.619469e-04   p_cons 8.015139e-01   p_joint 1.113053e-03

Joint ci ratio: 5.516410e-02	ci left: 1.082746e-03	ci right 1.144385e-03	k: 5043	n:4530000
Cons ci ratio: 9.165862e-04	ci left: 8.011266e-01	ci right 8.018615e-01	k: 3630769	n:4530000
KS ci ratio: 1.137158e-01	ci left: 2.473364e-04	ci right 2.773703e-04	k: 1187	n:4530000
CILP2   4530000 perm   10324 sec   (439 perm/sec)   p_kst 2.620309e-04   p_cons 8.014943e-01   p_joint 1.113245e-03

Joint ci ratio: 5.510405e-02	ci left: 1.082750e-03	ci right 1.144320e-03	k: 5054	n:4540000
Cons ci ratio: 9.155813e-04	ci left: 8.011253e-01	ci right 8.018593e-01	k: 3638776	n:4540000
KS ci ratio: 1.135248e-01	ci left: 2.476476e-04	ci right 2.776654e-04	k: 1191	n:4540000
CILP2   4540000 perm   10367 sec   (438 perm/sec)   p_kst 2.623348e-04   p_cons 8.014925e-01   p_joint 1.113216e-03

Joint ci ratio: 5.507141e-02	ci left: 1.081671e-03	ci right 1.143142e-03	k: 5060	n:4550000
Cons ci ratio: 9.145897e-04	ci left: 8.011204e-01	ci right 8.018537e-01	k: 3646767	n:4550000
KS ci ratio: 1.134773e-01	ci left: 2.473169e-04	ci right 2.772812e-04	k: 1192	n:4550000
CILP2   4550000 perm   10409 sec   (437 perm/sec)   p_kst 2.619780e-04   p_cons 8.014873e-01   p_joint 1.112088e-03

Joint ci ratio: 5.535691e-02	ci left: 1.068053e-03	ci right 1.129075e-03	k: 5008	n:4560000
Cons ci ratio: 9.135906e-04	ci left: 8.011193e-01	ci right 8.018518e-01	k: 3654775	n:4560000
KS ci ratio: 1.134298e-01	ci left: 2.469876e-04	ci right 2.768986e-04	k: 1193	n:4560000
CILP2   4560000 perm   10450 sec   (436 perm/sec)   p_kst 2.616228e-04   p_cons 8.014857e-01   p_joint 1.098246e-03

Joint ci ratio: 5.578224e-02	ci left: 1.049316e-03	ci right 1.109743e-03	k: 4932	n:4570000
Cons ci ratio: 9.126011e-04	ci left: 8.011160e-01	ci right 8.018477e-01	k: 3662773	n:4570000
KS ci ratio: 1.132402e-01	ci left: 2.472976e-04	ci right 2.771928e-04	k: 1197	n:4570000
CILP2   4570000 perm   10492 sec   (436 perm/sec)   p_kst 2.619256e-04   p_cons 8.014821e-01   p_joint 1.079212e-03

Joint ci ratio: 5.569760e-02	ci left: 1.050255e-03	ci right 1.110641e-03	k: 4947	n:4580000
Cons ci ratio: 9.115929e-04	ci left: 8.011204e-01	ci right 8.018513e-01	k: 3670806	n:4580000
KS ci ratio: 1.130046e-01	ci left: 2.478185e-04	ci right 2.777101e-04	k: 1202	n:4580000
CILP2   4580000 perm   10533 sec   (435 perm/sec)   p_kst 2.624454e-04   p_cons 8.014860e-01   p_joint 1.080131e-03

Joint ci ratio: 5.610206e-02	ci left: 1.032714e-03	ci right 1.092537e-03	k: 4876	n:4590000
Cons ci ratio: 9.106242e-04	ci left: 8.011121e-01	ci right 8.018422e-01	k: 3678781	n:4590000
KS ci ratio: 1.129577e-01	ci left: 2.474903e-04	ci right 2.773291e-04	k: 1203	n:4590000
CILP2   4590000 perm   10575 sec   (434 perm/sec)   p_kst 2.620915e-04   p_cons 8.014773e-01   p_joint 1.062309e-03

Joint ci ratio: 5.604463e-02	ci left: 1.032613e-03	ci right 1.092366e-03	k: 4886	n:4600000
Cons ci ratio: 9.096411e-04	ci left: 8.011100e-01	ci right 8.018392e-01	k: 3686784	n:4600000
KS ci ratio: 1.128172e-01	ci left: 2.475860e-04	ci right 2.773968e-04	k: 1206	n:4600000
CILP2   4600000 perm   10617 sec   (433 perm/sec)   p_kst 2.621739e-04   p_cons 8.014748e-01   p_joint 1.062174e-03

Joint ci ratio: 5.601029e-02	ci left: 1.031656e-03	ci right 1.091316e-03	k: 4892	n:4610000
Cons ci ratio: 9.086068e-04	ci left: 8.011269e-01	ci right 8.018554e-01	k: 3694875	n:4610000
KS ci ratio: 1.128173e-01	ci left: 2.470489e-04	ci right 2.767951e-04	k: 1206	n:4610000
CILP2   4610000 perm   10660 sec   (432 perm/sec)   p_kst 2.616052e-04   p_cons 8.014913e-01   p_joint 1.061171e-03

Joint ci ratio: 5.593031e-02	ci left: 1.032411e-03	ci right 1.092027e-03	k: 4906	n:4620000
Cons ci ratio: 9.076420e-04	ci left: 8.011206e-01	ci right 8.018483e-01	k: 3702859	n:4620000
KS ci ratio: 1.126308e-01	ci left: 2.473556e-04	ci right 2.770862e-04	k: 1210	n:4620000
CILP2   4620000 perm   10702 sec   (432 perm/sec)   p_kst 2.619048e-04   p_cons 8.014846e-01   p_joint 1.061905e-03

Joint ci ratio: 5.586772e-02	ci left: 1.032524e-03	ci right 1.092077e-03	k: 4917	n:4630000
Cons ci ratio: 9.066618e-04	ci left: 8.011208e-01	ci right 8.018477e-01	k: 3710873	n:4630000
KS ci ratio: 1.124452e-01	ci left: 2.476609e-04	ci right 2.773759e-04	k: 1214	n:4630000
CILP2   4630000 perm   10746 sec   (431 perm/sec)   p_kst 2.622030e-04   p_cons 8.014844e-01   p_joint 1.061987e-03

Joint ci ratio: 5.580535e-02	ci left: 1.032636e-03	ci right 1.092127e-03	k: 4928	n:4640000
Cons ci ratio: 9.057063e-04	ci left: 8.011135e-01	ci right 8.018396e-01	k: 3718852	n:4640000
KS ci ratio: 1.123066e-01	ci left: 2.477556e-04	ci right 2.774429e-04	k: 1217	n:4640000
CILP2   4640000 perm   10790 sec   (430 perm/sec)   p_kst 2.622845e-04   p_cons 8.014767e-01   p_joint 1.062069e-03

Joint ci ratio: 5.187616e-02	ci left: 1.194632e-03	ci right 1.258465e-03	k: 5702	n:4650000
Cons ci ratio: 9.047091e-04	ci left: 8.011219e-01	ci right 8.018472e-01	k: 3726904	n:4650000
KS ci ratio: 1.121686e-01	ci left: 2.478498e-04	ci right 2.775095e-04	k: 1220	n:4650000
CILP2   4650000 perm   10835 sec   (429 perm/sec)   p_kst 2.623656e-04   p_cons 8.014847e-01   p_joint 1.226237e-03

Joint ci ratio: 5.183075e-02	ci left: 1.194186e-03	ci right 1.257938e-03	k: 5712	n:4660000
Cons ci ratio: 9.037573e-04	ci left: 8.011154e-01	ci right 8.018400e-01	k: 3734887	n:4660000
KS ci ratio: 1.119853e-01	ci left: 2.481523e-04	ci right 2.777964e-04	k: 1224	n:4660000
CILP2   4660000 perm   10879 sec   (428 perm/sec)   p_kst 2.626609e-04   p_cons 8.014779e-01   p_joint 1.225751e-03

Joint ci ratio: 5.177641e-02	ci left: 1.194165e-03	ci right 1.257848e-03	k: 5724	n:4670000
Cons ci ratio: 9.027981e-04	ci left: 8.011127e-01	ci right 8.018364e-01	k: 3742887	n:4670000
KS ci ratio: 1.118029e-01	ci left: 2.484534e-04	ci right 2.780820e-04	k: 1228	n:4670000
CILP2   4670000 perm   10925 sec   (427 perm/sec)   p_kst 2.629550e-04   p_cons 8.014747e-01   p_joint 1.225696e-03

Joint ci ratio: 5.241279e-02	ci left: 1.162510e-03	ci right 1.225289e-03	k: 5586	n:4680000
Cons ci ratio: 9.018735e-04	ci left: 8.010988e-01	ci right 8.018218e-01	k: 3750835	n:4680000
KS ci ratio: 1.115761e-01	ci left: 2.489611e-04	ci right 2.785860e-04	k: 1233	n:4680000
CILP2   4680000 perm   10969 sec   (427 perm/sec)   p_kst 2.634615e-04   p_cons 8.014605e-01   p_joint 1.193590e-03

Joint ci ratio: 5.236128e-02	ci left: 1.162346e-03	ci right 1.225053e-03	k: 5597	n:4690000
Cons ci ratio: 9.008877e-04	ci left: 8.011076e-01	ci right 8.018298e-01	k: 3758889	n:4690000
KS ci ratio: 1.113957e-01	ci left: 2.492594e-04	ci right 2.788687e-04	k: 1237	n:4690000
CILP2   4690000 perm   11012 sec   (426 perm/sec)   p_kst 2.637527e-04   p_cons 8.014689e-01   p_joint 1.193390e-03

Joint ci ratio: 5.230525e-02	ci left: 1.162393e-03	ci right 1.225033e-03	k: 5609	n:4700000
Cons ci ratio: 8.998799e-04	ci left: 8.011253e-01	ci right 8.018467e-01	k: 3766985	n:4700000
KS ci ratio: 1.113507e-01	ci left: 2.489359e-04	ci right 2.784940e-04	k: 1238	n:4700000
CILP2   4700000 perm   11056 sec   (425 perm/sec)   p_kst 2.634043e-04   p_cons 8.014862e-01   p_joint 1.193404e-03

Joint ci ratio: 5.304409e-02	ci left: 1.127449e-03	ci right 1.189091e-03	k: 5454	n:4710000
Cons ci ratio: 8.989198e-04	ci left: 8.011272e-01	ci right 8.018478e-01	k: 3775007	n:4710000
KS ci ratio: 1.112610e-01	ci left: 2.488201e-04	ci right 2.783392e-04	k: 1240	n:4710000
CILP2   4710000 perm   11099 sec   (424 perm/sec)   p_kst 2.632696e-04   p_cons 8.014877e-01   p_joint 1.157962e-03

Joint ci ratio: 5.295675e-02	ci left: 1.128823e-03	ci right 1.190435e-03	k: 5472	n:4720000
Cons ci ratio: 8.979855e-04	ci left: 8.011210e-01	ci right 8.018409e-01	k: 3782991	n:4720000
KS ci ratio: 1.110375e-01	ci left: 2.493229e-04	ci right 2.788383e-04	k: 1245	n:4720000
CILP2   4720000 perm   11144 sec   (424 perm/sec)   p_kst 2.637712e-04   p_cons 8.014811e-01   p_joint 1.159322e-03

Joint ci ratio: 5.344792e-02	ci left: 1.105576e-03	ci right 1.166496e-03	k: 5372	n:4730000
Cons ci ratio: 8.970255e-04	ci left: 8.011250e-01	ci right 8.018442e-01	k: 3791023	n:4730000
KS ci ratio: 1.109041e-01	ci left: 2.494124e-04	ci right 2.789006e-04	k: 1248	n:4730000
CILP2   4730000 perm   11190 sec   (423 perm/sec)   p_kst 2.638478e-04   p_cons 8.014848e-01   p_joint 1.135729e-03

Joint ci ratio: 5.372397e-02	ci left: 1.091795e-03	ci right 1.152277e-03	k: 5317	n:4740000
Cons ci ratio: 8.960769e-04	ci left: 8.011261e-01	ci right 8.018445e-01	k: 3799041	n:4740000
KS ci ratio: 1.108597e-01	ci left: 2.490913e-04	ci right 2.785290e-04	k: 1249	n:4740000
CILP2   4740000 perm   11234 sec   (422 perm/sec)   p_kst 2.635021e-04   p_cons 8.014854e-01   p_joint 1.121730e-03

Joint ci ratio: 5.383054e-02	ci left: 1.085135e-03	ci right 1.145370e-03	k: 5296	n:4750000
Cons ci ratio: 8.951165e-04	ci left: 8.011324e-01	ci right 8.018500e-01	k: 3807084	n:4750000
KS ci ratio: 1.107269e-01	ci left: 2.491810e-04	ci right 2.785917e-04	k: 1252	n:4750000
CILP2   4750000 perm   11278 sec   (421 perm/sec)   p_kst 2.635789e-04   p_cons 8.014914e-01   p_joint 1.114947e-03

Joint ci ratio: 5.377981e-02	ci left: 1.084928e-03	ci right 1.145093e-03	k: 5306	n:4760000
Cons ci ratio: 8.941846e-04	ci left: 8.011296e-01	ci right 8.018465e-01	k: 3815084	n:4760000
KS ci ratio: 1.104627e-01	ci left: 2.498832e-04	ci right 2.793018e-04	k: 1258	n:4760000
CILP2   4760000 perm   11323 sec   (420 perm/sec)   p_kst 2.642857e-04   p_cons 8.014882e-01   p_joint 1.114706e-03

Joint ci ratio: 5.697522e-02	ci left: 9.631542e-04	ci right 1.019844e-03	k: 4728	n:4770000
Cons ci ratio: 8.932479e-04	ci left: 8.011296e-01	ci right 8.018457e-01	k: 3823097	n:4770000
KS ci ratio: 1.103751e-01	ci left: 2.497670e-04	ci right 2.791471e-04	k: 1260	n:4770000
CILP2   4770000 perm   11367 sec   (420 perm/sec)   p_kst 2.641509e-04   p_cons 8.014878e-01   p_joint 9.911950e-04

Joint ci ratio: 5.694515e-02	ci left: 9.621704e-04	ci right 1.018772e-03	k: 4733	n:4780000
Cons ci ratio: 8.923001e-04	ci left: 8.011346e-01	ci right 8.018500e-01	k: 3831134	n:4780000
KS ci ratio: 1.103314e-01	ci left: 2.494479e-04	ci right 2.787781e-04	k: 1261	n:4780000
CILP2   4780000 perm   11410 sec   (419 perm/sec)   p_kst 2.638075e-04   p_cons 8.014925e-01   p_joint 9.901674e-04

Joint ci ratio: 5.690311e-02	ci left: 9.616022e-04	ci right 1.018127e-03	k: 4740	n:4790000
Cons ci ratio: 8.913757e-04	ci left: 8.011323e-01	ci right 8.018469e-01	k: 3839136	n:4790000
KS ci ratio: 1.102877e-01	ci left: 2.491301e-04	ci right 2.784106e-04	k: 1262	n:4790000
CILP2   4790000 perm   11454 sec   (418 perm/sec)   p_kst 2.634656e-04   p_cons 8.014898e-01   p_joint 9.895616e-04

Joint ci ratio: 5.681926e-02	ci left: 9.624741e-04	ci right 1.018964e-03	k: 4754	n:4800000
Cons ci ratio: 8.904519e-04	ci left: 8.011308e-01	ci right 8.018447e-01	k: 3847142	n:4800000
KS ci ratio: 1.101135e-01	ci left: 2.494215e-04	ci right 2.786869e-04	k: 1266	n:4800000
CILP2   4800000 perm   11498 sec   (417 perm/sec)   p_kst 2.637500e-04   p_cons 8.014879e-01   p_joint 9.904167e-04

Joint ci ratio: 5.731616e-02	ci left: 9.436683e-04	ci right 9.995548e-04	k: 4672	n:4810000
Cons ci ratio: 8.895100e-04	ci left: 8.011368e-01	ci right 8.018499e-01	k: 3855184	n:4810000
KS ci ratio: 1.100267e-01	ci left: 2.493073e-04	ci right 2.785347e-04	k: 1268	n:4810000
CILP2   4810000 perm   11543 sec   (417 perm/sec)   p_kst 2.636175e-04   p_cons 8.014936e-01   p_joint 9.713098e-04

Joint ci ratio: 5.809289e-02	ci left: 9.163551e-04	ci right 9.713842e-04	k: 4548	n:4820000
Cons ci ratio: 8.885845e-04	ci left: 8.011380e-01	ci right 8.018504e-01	k: 3863203	n:4820000
KS ci ratio: 1.098105e-01	ci left: 2.497989e-04	ci right 2.790227e-04	k: 1273	n:4820000
CILP2   4820000 perm   11587 sec   (416 perm/sec)   p_kst 2.641079e-04   p_cons 8.014944e-01   p_joint 9.435685e-04

Joint ci ratio: 5.803552e-02	ci left: 9.162942e-04	ci right 9.712634e-04	k: 4557	n:4830000
Cons ci ratio: 8.876710e-04	ci left: 8.011359e-01	ci right 8.018476e-01	k: 3871206	n:4830000
KS ci ratio: 1.097244e-01	ci left: 2.496844e-04	ci right 2.788705e-04	k: 1275	n:4830000
CILP2   4830000 perm   11631 sec   (415 perm/sec)   p_kst 2.639752e-04   p_cons 8.014919e-01   p_joint 9.434783e-04

Joint ci ratio: 5.799102e-02	ci left: 9.158263e-04	ci right 9.707239e-04	k: 4564	n:4840000
Cons ci ratio: 8.867483e-04	ci left: 8.011382e-01	ci right 8.018491e-01	k: 3879230	n:4840000
KS ci ratio: 1.095957e-01	ci left: 2.497714e-04	ci right 2.789311e-04	k: 1278	n:4840000
CILP2   4840000 perm   11676 sec   (415 perm/sec)   p_kst 2.640496e-04   p_cons 8.014938e-01   p_joint 9.429752e-04

Joint ci ratio: 5.794662e-02	ci left: 9.153604e-04	ci right 9.701867e-04	k: 4571	n:4850000
Cons ci ratio: 8.858176e-04	ci left: 8.011443e-01	ci right 8.018545e-01	k: 3887273	n:4850000
KS ci ratio: 1.095529e-01	ci left: 2.494569e-04	ci right 2.785678e-04	k: 1279	n:4850000
CILP2   4850000 perm   11720 sec   (414 perm/sec)   p_kst 2.637113e-04   p_cons 8.014996e-01   p_joint 9.424742e-04

Joint ci ratio: 5.791499e-02	ci left: 9.144908e-04	ci right 9.692341e-04	k: 4576	n:4860000
Cons ci ratio: 8.849029e-04	ci left: 8.011457e-01	ci right 8.018552e-01	k: 3895293	n:4860000
KS ci ratio: 1.095529e-01	ci left: 2.489436e-04	ci right 2.779947e-04	k: 1279	n:4860000
CILP2   4860000 perm   11765 sec   (413 perm/sec)   p_kst 2.631687e-04   p_cons 8.015006e-01   p_joint 9.415638e-04

Joint ci ratio: 5.787077e-02	ci left: 9.140296e-04	ci right 9.687021e-04	k: 4583	n:4870000
Cons ci ratio: 8.840162e-04	ci left: 8.011381e-01	ci right 8.018468e-01	k: 3903269	n:4870000
KS ci ratio: 1.095529e-01	ci left: 2.484324e-04	ci right 2.774238e-04	k: 1279	n:4870000
CILP2   4870000 perm   11810 sec   (412 perm/sec)   p_kst 2.626283e-04   p_cons 8.014926e-01   p_joint 9.410678e-04

Joint ci ratio: 5.781404e-02	ci left: 9.139742e-04	ci right 9.685880e-04	k: 4592	n:4880000
Cons ci ratio: 8.831270e-04	ci left: 8.011323e-01	ci right 8.018403e-01	k: 3911254	n:4880000
KS ci ratio: 1.094248e-01	ci left: 2.485213e-04	ci right 2.774869e-04	k: 1282	n:4880000
CILP2   4880000 perm   11856 sec   (412 perm/sec)   p_kst 2.627049e-04   p_cons 8.014865e-01   p_joint 9.409836e-04

Joint ci ratio: 5.775120e-02	ci left: 9.141205e-04	ci right 9.686818e-04	k: 4602	n:4890000
Cons ci ratio: 8.822223e-04	ci left: 8.011331e-01	ci right 8.018404e-01	k: 3919271	n:4890000
KS ci ratio: 1.092546e-01	ci left: 2.488087e-04	ci right 2.777598e-04	k: 1286	n:4890000
CILP2   4890000 perm   11901 sec   (411 perm/sec)   p_kst 2.629857e-04   p_cons 8.014869e-01   p_joint 9.411043e-04

Joint ci ratio: 5.771989e-02	ci left: 9.132607e-04	ci right 9.677400e-04	k: 4607	n:4900000
Cons ci ratio: 8.813136e-04	ci left: 8.011363e-01	ci right 8.018429e-01	k: 3927300	n:4900000
KS ci ratio: 1.092122e-01	ci left: 2.484994e-04	ci right 2.774026e-04	k: 1287	n:4900000
CILP2   4900000 perm   11947 sec   (410 perm/sec)   p_kst 2.626531e-04   p_cons 8.014898e-01   p_joint 9.402041e-04

Joint ci ratio: 5.767611e-02	ci left: 9.128057e-04	ci right 9.672153e-04	k: 4614	n:4910000
Cons ci ratio: 8.803908e-04	ci left: 8.011457e-01	ci right 8.018515e-01	k: 3935359	n:4910000
KS ci ratio: 1.091698e-01	ci left: 2.481914e-04	ci right 2.770469e-04	k: 1288	n:4910000
CILP2   4910000 perm   11993 sec   (409 perm/sec)   p_kst 2.623218e-04   p_cons 8.014988e-01   p_joint 9.397149e-04

Joint ci ratio: 5.763243e-02	ci left: 9.123527e-04	ci right 9.666927e-04	k: 4621	n:4920000
Cons ci ratio: 8.794783e-04	ci left: 8.011524e-01	ci right 8.018575e-01	k: 3943405	n:4920000
KS ci ratio: 1.090430e-01	ci left: 2.482801e-04	ci right 2.771102e-04	k: 1291	n:4920000
CILP2   4920000 perm   12039 sec   (409 perm/sec)   p_kst 2.623984e-04   p_cons 8.015051e-01   p_joint 9.392276e-04

Joint ci ratio: 5.756397e-02	ci left: 9.127012e-04	ci right 9.669952e-04	k: 4632	n:4930000
Cons ci ratio: 8.785965e-04	ci left: 8.011488e-01	ci right 8.018532e-01	k: 3951401	n:4930000
KS ci ratio: 1.088326e-01	ci left: 2.487630e-04	ci right 2.775899e-04	k: 1296	n:4930000
CILP2   4930000 perm   12084 sec   (408 perm/sec)   p_kst 2.628803e-04   p_cons 8.015012e-01   p_joint 9.395538e-04

Joint ci ratio: 5.750194e-02	ci left: 9.128488e-04	ci right 9.670911e-04	k: 4642	n:4940000
Cons ci ratio: 8.777269e-04	ci left: 8.011419e-01	ci right 8.018456e-01	k: 3959380	n:4940000
KS ci ratio: 1.087907e-01	ci left: 2.484564e-04	ci right 2.772359e-04	k: 1297	n:4940000
CILP2   4940000 perm   12129 sec   (407 perm/sec)   p_kst 2.625506e-04   p_cons 8.014939e-01   p_joint 9.396761e-04

Joint ci ratio: 5.744629e-02	ci left: 9.127967e-04	ci right 9.669817e-04	k: 4651	n:4950000
Cons ci ratio: 8.768699e-04	ci left: 8.011314e-01	ci right 8.018343e-01	k: 3967341	n:4950000
KS ci ratio: 1.086652e-01	ci left: 2.485440e-04	ci right 2.772984e-04	k: 1300	n:4950000
CILP2   4950000 perm   12174 sec   (407 perm/sec)   p_kst 2.626263e-04   p_cons 8.014830e-01   p_joint 9.395960e-04

Joint ci ratio: 5.736617e-02	ci left: 9.135397e-04	ci right 9.676907e-04	k: 4664	n:4960000
Cons ci ratio: 8.759954e-04	ci left: 8.011281e-01	ci right 8.018304e-01	k: 3975338	n:4960000
KS ci ratio: 1.084569e-01	ci left: 2.490236e-04	ci right 2.777747e-04	k: 1305	n:4960000
CILP2   4960000 perm   12219 sec   (406 perm/sec)   p_kst 2.631048e-04   p_cons 8.014794e-01   p_joint 9.403226e-04

Joint ci ratio: 5.731705e-02	ci left: 9.132882e-04	ci right 9.673764e-04	k: 4672	n:4970000
Cons ci ratio: 8.750975e-04	ci left: 8.011344e-01	ci right 8.018359e-01	k: 3983382	n:4970000
KS ci ratio: 1.083740e-01	ci left: 2.489141e-04	ci right 2.776291e-04	k: 1307	n:4970000
CILP2   4970000 perm   12265 sec   (405 perm/sec)   p_kst 2.629779e-04   p_cons 8.014853e-01   p_joint 9.400402e-04

Joint ci ratio: 5.721914e-02	ci left: 9.146212e-04	ci right 9.686927e-04	k: 4688	n:4980000
Cons ci ratio: 8.742040e-04	ci left: 8.011400e-01	ci right 8.018408e-01	k: 3991423	n:4980000
KS ci ratio: 1.082086e-01	ci left: 2.491957e-04	ci right 2.778966e-04	k: 1311	n:4980000
CILP2   4980000 perm   12310 sec   (405 perm/sec)   p_kst 2.632530e-04   p_cons 8.014906e-01   p_joint 9.413655e-04

Joint ci ratio: 5.717040e-02	ci left: 9.143685e-04	ci right 9.683776e-04	k: 4696	n:4990000
Cons ci ratio: 8.733089e-04	ci left: 8.011471e-01	ci right 8.018473e-01	k: 3999472	n:4990000
KS ci ratio: 1.081674e-01	ci left: 2.488913e-04	ci right 2.775455e-04	k: 1312	n:4990000
CILP2   4990000 perm   12356 sec   (404 perm/sec)   p_kst 2.629259e-04   p_cons 8.014974e-01   p_joint 9.410822e-04

Joint ci ratio: 5.714002e-02	ci left: 9.135255e-04	ci right 9.674551e-04	k: 4701	n:5000000
Cons ci ratio: 8.724483e-04	ci left: 8.011427e-01	ci right 8.018421e-01	k: 4007463	n:5000000
KS ci ratio: 1.080852e-01	ci left: 2.487827e-04	ci right 2.774013e-04	k: 1314	n:5000000
CILP2   5000000 perm   12402 sec   (403 perm/sec)   p_kst 2.628000e-04   p_cons 8.014926e-01   p_joint 9.402000e-04

Outputting figure to mutsig2_images.part000000000038/CILP2.6_3503_5000000_0.0002628_0.80149_0.0009402.png
                gene_name: CILP2
               theta_stop: 0.11 
                    nperm: 5000000 
                     p_ks: 0.00026 
        ci_ks_bounds_left: 0.00025 
       ci_ks_bounds_right: 0.00028 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.00094 
     ci_joint_bounds_left: 0.00091 
    ci_joint_bounds_right: 0.00097 

Current progress: 6 percent done.
CHRNB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.090336e-01	ci left: 7.243098e-03	ci right 1.105110e-02	k: 90	n:10000
Cons ci ratio: 4.702584e-01	ci left: 5.284222e-03	ci right 8.612765e-03	k: 68	n:10000
KS ci ratio: 3.960612e-01	ci left: 7.782754e-03	ci right 1.171078e-02	k: 96	n:10000
CHRNB2   10000 perm   2 sec   (5977 perm/sec)   p_kst 9.600000e-03   p_cons 6.800000e-03   p_joint 9.000000e-03

Joint ci ratio: 4.077371e-01	ci left: 3.664911e-03	ci right 5.583495e-03	k: 91	n:20000
Cons ci ratio: 3.188563e-01	ci left: 6.305286e-03	ci right 8.741182e-03	k: 149	n:20000
KS ci ratio: 2.884389e-01	ci left: 7.830711e-03	ci right 1.051490e-02	k: 182	n:20000
CHRNB2   20000 perm   4 sec   (5140 perm/sec)   p_kst 9.100000e-03   p_cons 7.450000e-03   p_joint 4.550000e-03

Joint ci ratio: 3.994361e-01	ci left: 2.562755e-03	ci right 3.869722e-03	k: 95	n:30000
Cons ci ratio: 2.597662e-01	ci left: 6.554965e-03	ci right 8.542192e-03	k: 225	n:30000
KS ci ratio: 2.415802e-01	ci left: 7.648923e-03	ci right 9.781191e-03	k: 260	n:30000
CHRNB2   30000 perm   6 sec   (4881 perm/sec)   p_kst 8.666667e-03   p_cons 7.500000e-03   p_joint 3.166667e-03

Joint ci ratio: 3.500628e-01	ci left: 2.579060e-03	ci right 3.695006e-03	k: 124	n:40000
Cons ci ratio: 2.258478e-01	ci left: 6.630713e-03	ci right 8.341955e-03	k: 298	n:40000
KS ci ratio: 2.104389e-01	ci left: 7.694740e-03	ci right 9.527670e-03	k: 343	n:40000
CHRNB2   40000 perm   8 sec   (4732 perm/sec)   p_kst 8.575000e-03   p_cons 7.450000e-03   p_joint 3.100000e-03

Joint ci ratio: 4.039329e-01	ci left: 1.501514e-03	ci right 2.278149e-03	k: 93	n:50000
Cons ci ratio: 1.997951e-01	ci left: 6.876477e-03	ci right 8.421510e-03	k: 381	n:50000
KS ci ratio: 1.877827e-01	ci left: 7.828346e-03	ci right 9.469466e-03	k: 431	n:50000
CHRNB2   50000 perm   11 sec   (4592 perm/sec)   p_kst 8.620000e-03   p_cons 7.620000e-03   p_joint 1.860000e-03

Joint ci ratio: 4.175634e-01	ci left: 1.161549e-03	ci right 1.788267e-03	k: 87	n:60000
Cons ci ratio: 1.838890e-01	ci left: 6.825224e-03	ci right 8.223046e-03	k: 450	n:60000
KS ci ratio: 1.714884e-01	ci left: 7.892636e-03	ci right 9.388808e-03	k: 517	n:60000
CHRNB2   60000 perm   13 sec   (4477 perm/sec)   p_kst 8.616667e-03   p_cons 7.500000e-03   p_joint 1.450000e-03

Joint ci ratio: 4.106575e-01	ci left: 1.033989e-03	ci right 1.580128e-03	k: 90	n:70000
Cons ci ratio: 1.623748e-01	ci left: 7.586368e-03	ci right 8.940583e-03	k: 577	n:70000
KS ci ratio: 1.585472e-01	ci left: 7.970429e-03	ci right 9.356476e-03	k: 605	n:70000
CHRNB2   70000 perm   16 sec   (4379 perm/sec)   p_kst 8.642857e-03   p_cons 8.242857e-03   p_joint 1.285714e-03

Joint ci ratio: 4.224746e-01	ci left: 8.487727e-04	ci right 1.313633e-03	k: 85	n:80000
Cons ci ratio: 1.542082e-01	ci left: 7.394333e-03	ci right 8.641742e-03	k: 640	n:80000
KS ci ratio: 1.491320e-01	ci left: 7.923621e-03	ci right 9.212399e-03	k: 684	n:80000
CHRNB2   80000 perm   19 sec   (4277 perm/sec)   p_kst 8.550000e-03   p_cons 8.000000e-03   p_joint 1.062500e-03

Joint ci ratio: 4.225001e-01	ci left: 7.544562e-04	ci right 1.167690e-03	k: 85	n:90000
Cons ci ratio: 1.460154e-01	ci left: 7.364086e-03	ci right 8.534629e-03	k: 714	n:90000
KS ci ratio: 1.402022e-01	ci left: 8.007070e-03	ci right 9.224920e-03	k: 774	n:90000
CHRNB2   90000 perm   22 sec   (4185 perm/sec)   p_kst 8.600000e-03   p_cons 7.933333e-03   p_joint 9.444444e-04

Joint ci ratio: 4.153321e-01	ci left: 7.058437e-04	ci right 1.084074e-03	k: 88	n:100000
Cons ci ratio: 1.385615e-01	ci left: 7.389572e-03	ci right 8.499254e-03	k: 793	n:100000
KS ci ratio: 1.324741e-01	ci left: 8.104685e-03	ci right 9.264083e-03	k: 867	n:100000
CHRNB2   100000 perm   24 sec   (4121 perm/sec)   p_kst 8.670000e-03   p_cons 7.930000e-03   p_joint 8.800000e-04

Joint ci ratio: 4.085155e-01	ci left: 6.661191e-04	ci right 1.015612e-03	k: 91	n:110000
Cons ci ratio: 1.326810e-01	ci left: 7.350125e-03	ci right 8.403344e-03	k: 865	n:110000
KS ci ratio: 1.257655e-01	ci left: 8.203673e-03	ci right 9.313370e-03	k: 962	n:110000
CHRNB2   110000 perm   27 sec   (4044 perm/sec)   p_kst 8.745455e-03   p_cons 7.863636e-03   p_joint 8.272727e-04

Joint ci ratio: 4.977098e-01	ci left: 3.888563e-04	ci right 6.529282e-04	k: 61	n:120000
Cons ci ratio: 1.276280e-01	ci left: 7.301945e-03	ci right 8.305394e-03	k: 935	n:120000
KS ci ratio: 1.213794e-01	ci left: 8.093384e-03	ci right 9.147236e-03	k: 1033	n:120000
CHRNB2   120000 perm   30 sec   (3981 perm/sec)   p_kst 8.608333e-03   p_cons 7.791667e-03   p_joint 5.083333e-04

Joint ci ratio: 5.102227e-01	ci left: 3.388002e-04	ci right 5.767196e-04	k: 58	n:130000
Cons ci ratio: 1.230498e-01	ci left: 7.269282e-03	ci right 8.229794e-03	k: 1006	n:130000
KS ci ratio: 1.167315e-01	ci left: 8.097731e-03	ci right 9.108987e-03	k: 1117	n:130000
CHRNB2   130000 perm   33 sec   (3922 perm/sec)   p_kst 8.592308e-03   p_cons 7.738462e-03   p_joint 4.461538e-04

Joint ci ratio: 2.665154e-01	ci left: 1.337413e-03	ci right 1.755097e-03	k: 215	n:140000
Cons ci ratio: 1.186544e-01	ci left: 7.276497e-03	ci right 8.201209e-03	k: 1082	n:140000
KS ci ratio: 1.124853e-01	ci left: 8.116004e-03	ci right 9.090227e-03	k: 1203	n:140000
CHRNB2   140000 perm   36 sec   (3859 perm/sec)   p_kst 8.592857e-03   p_cons 7.728571e-03   p_joint 1.535714e-03

Joint ci ratio: 6.197217e-01	ci left: 1.848917e-04	ci right 3.554116e-04	k: 39	n:150000
Cons ci ratio: 1.174892e-01	ci left: 6.933660e-03	ci right 7.805545e-03	k: 1104	n:150000
KS ci ratio: 1.081648e-01	ci left: 8.210267e-03	ci right 9.155539e-03	k: 1301	n:150000
CHRNB2   150000 perm   39 sec   (3800 perm/sec)   p_kst 8.673333e-03   p_cons 7.360000e-03   p_joint 2.600000e-04

Joint ci ratio: 6.047878e-01	ci left: 1.838955e-04	ci right 3.476162e-04	k: 41	n:160000
Cons ci ratio: 1.134036e-01	ci left: 6.991951e-03	ci right 7.838546e-03	k: 1185	n:160000
KS ci ratio: 1.049515e-01	ci left: 8.189878e-03	ci right 9.103060e-03	k: 1382	n:160000
CHRNB2   160000 perm   43 sec   (3742 perm/sec)   p_kst 8.637500e-03   p_cons 7.406250e-03   p_joint 2.562500e-04

Joint ci ratio: 2.307918e-01	ci left: 1.498686e-03	ci right 1.895089e-03	k: 287	n:170000
Cons ci ratio: 1.105548e-01	ci left: 6.935139e-03	ci right 7.752385e-03	k: 1247	n:170000
KS ci ratio: 1.023972e-01	ci left: 8.109191e-03	ci right 8.990045e-03	k: 1452	n:170000
CHRNB2   170000 perm   46 sec   (3685 perm/sec)   p_kst 8.541176e-03   p_cons 7.335294e-03   p_joint 1.688235e-03

Joint ci ratio: 2.276573e-01	ci left: 1.457314e-03	ci right 1.836804e-03	k: 295	n:180000
Cons ci ratio: 1.079104e-01	ci left: 6.884878e-03	ci right 7.675561e-03	k: 1309	n:180000
KS ci ratio: 9.942979e-02	ci left: 8.135236e-03	ci right 8.991816e-03	k: 1540	n:180000
CHRNB2   180000 perm   50 sec   (3628 perm/sec)   p_kst 8.555556e-03   p_cons 7.272222e-03   p_joint 1.638889e-03

Joint ci ratio: 2.280534e-01	ci left: 1.375644e-03	ci right 1.734576e-03	k: 294	n:190000
Cons ci ratio: 1.049473e-01	ci left: 6.906749e-03	ci right 7.676820e-03	k: 1384	n:190000
KS ci ratio: 9.649736e-02	ci left: 8.194828e-03	ci right 9.030794e-03	k: 1635	n:190000
CHRNB2   190000 perm   53 sec   (3572 perm/sec)   p_kst 8.605263e-03   p_cons 7.284211e-03   p_joint 1.547368e-03

Joint ci ratio: 2.349419e-01	ci left: 1.226779e-03	ci right 1.557944e-03	k: 277	n:200000
Cons ci ratio: 1.026415e-01	ci left: 6.868227e-03	ci right 7.616162e-03	k: 1447	n:200000
KS ci ratio: 9.389205e-02	ci left: 8.234143e-03	ci right 9.050194e-03	k: 1727	n:200000
CHRNB2   200000 perm   57 sec   (3518 perm/sec)   p_kst 8.635000e-03   p_cons 7.235000e-03   p_joint 1.385000e-03

Joint ci ratio: 2.308292e-01	ci left: 1.213201e-03	ci right 1.534150e-03	k: 287	n:210000
Cons ci ratio: 1.003809e-01	ci left: 6.847471e-03	ci right 7.575754e-03	k: 1513	n:210000
KS ci ratio: 9.161399e-02	ci left: 8.246719e-03	ci right 9.043123e-03	k: 1814	n:210000
CHRNB2   210000 perm   61 sec   (3468 perm/sec)   p_kst 8.638095e-03   p_cons 7.204762e-03   p_joint 1.366667e-03

Joint ci ratio: 2.292478e-01	ci left: 1.175186e-03	ci right 1.483648e-03	k: 291	n:220000
Cons ci ratio: 9.798262e-02	ci left: 6.868679e-03	ci right 7.580761e-03	k: 1588	n:220000
KS ci ratio: 9.006907e-02	ci left: 8.151708e-03	ci right 8.924961e-03	k: 1877	n:220000
CHRNB2   220000 perm   64 sec   (3419 perm/sec)   p_kst 8.531818e-03   p_cons 7.218182e-03   p_joint 1.322727e-03

Joint ci ratio: 2.055838e-01	ci left: 1.416044e-03	ci right 1.744548e-03	k: 362	n:230000
Cons ci ratio: 9.557504e-02	ci left: 6.913699e-03	ci right 7.611849e-03	k: 1669	n:230000
KS ci ratio: 8.805230e-02	ci left: 8.167125e-03	ci right 8.923600e-03	k: 1964	n:230000
CHRNB2   230000 perm   68 sec   (3370 perm/sec)   p_kst 8.539130e-03   p_cons 7.256522e-03   p_joint 1.573913e-03

Joint ci ratio: 2.169608e-01	ci left: 1.211012e-03	ci right 1.509572e-03	k: 325	n:240000
Cons ci ratio: 9.355213e-02	ci left: 6.922602e-03	ci right 7.606045e-03	k: 1742	n:240000
KS ci ratio: 8.625003e-02	ci left: 8.165123e-03	ci right 8.905153e-03	k: 2047	n:240000
CHRNB2   240000 perm   72 sec   (3323 perm/sec)   p_kst 8.529167e-03   p_cons 7.258333e-03   p_joint 1.354167e-03

Joint ci ratio: 2.221441e-01	ci left: 1.105864e-03	ci right 1.385905e-03	k: 310	n:250000
Cons ci ratio: 9.157631e-02	ci left: 6.942664e-03	ci right 7.612835e-03	k: 1818	n:250000
KS ci ratio: 8.481540e-02	ci left: 8.112519e-03	ci right 8.834946e-03	k: 2117	n:250000
CHRNB2   250000 perm   76 sec   (3273 perm/sec)   p_kst 8.468000e-03   p_cons 7.272000e-03   p_joint 1.240000e-03

Joint ci ratio: 2.225078e-01	ci left: 1.059696e-03	ci right 1.328545e-03	k: 309	n:260000
Cons ci ratio: 8.950674e-02	ci left: 6.995167e-03	ci right 7.654348e-03	k: 1903	n:260000
KS ci ratio: 8.333487e-02	ci left: 8.086656e-03	ci right 8.793598e-03	k: 2193	n:260000
CHRNB2   260000 perm   81 sec   (3229 perm/sec)   p_kst 8.434615e-03   p_cons 7.319231e-03   p_joint 1.188462e-03

Joint ci ratio: 2.200394e-01	ci left: 1.044936e-03	ci right 1.306701e-03	k: 316	n:270000
Cons ci ratio: 8.783874e-02	ci left: 7.000463e-03	ci right 7.647218e-03	k: 1976	n:270000
KS ci ratio: 8.176594e-02	ci left: 8.095468e-03	ci right 8.789220e-03	k: 2278	n:270000
CHRNB2   270000 perm   85 sec   (3186 perm/sec)   p_kst 8.437037e-03   p_cons 7.318519e-03   p_joint 1.170370e-03

Joint ci ratio: 2.163186e-01	ci left: 1.044756e-03	ci right 1.301463e-03	k: 327	n:280000
Cons ci ratio: 8.619713e-02	ci left: 7.015970e-03	ci right 7.651434e-03	k: 2052	n:280000
KS ci ratio: 8.040256e-02	ci left: 8.079264e-03	ci right 8.759541e-03	k: 2356	n:280000
CHRNB2   280000 perm   89 sec   (3144 perm/sec)   p_kst 8.414286e-03   p_cons 7.328571e-03   p_joint 1.167857e-03

Joint ci ratio: 2.146909e-01	ci left: 1.025039e-03	ci right 1.274757e-03	k: 332	n:290000
Cons ci ratio: 8.456426e-02	ci left: 7.044016e-03	ci right 7.669338e-03	k: 2132	n:290000
KS ci ratio: 7.907243e-02	ci left: 8.071028e-03	ci right 8.738852e-03	k: 2436	n:290000
CHRNB2   290000 perm   94 sec   (3101 perm/sec)   p_kst 8.400000e-03   p_cons 7.351724e-03   p_joint 1.144828e-03

Joint ci ratio: 2.578173e-01	ci left: 6.708106e-04	ci right 8.723686e-04	k: 230	n:300000
Cons ci ratio: 8.319139e-02	ci left: 7.040917e-03	ci right 7.655324e-03	k: 2203	n:300000
KS ci ratio: 7.775948e-02	ci left: 8.073236e-03	ci right 8.729647e-03	k: 2519	n:300000
CHRNB2   300000 perm   98 sec   (3061 perm/sec)   p_kst 8.396667e-03   p_cons 7.343333e-03   p_joint 7.666667e-04

Joint ci ratio: 2.647950e-01	ci left: 6.129943e-04	ci right 8.029923e-04	k: 218	n:310000
Cons ci ratio: 8.170258e-02	ci left: 7.069698e-03	ci right 7.675050e-03	k: 2284	n:310000
KS ci ratio: 7.640630e-02	ci left: 8.097539e-03	ci right 8.743960e-03	k: 2609	n:310000
CHRNB2   310000 perm   103 sec   (3019 perm/sec)   p_kst 8.416129e-03   p_cons 7.367742e-03   p_joint 7.032258e-04

Joint ci ratio: 2.685041e-01	ci left: 5.763400e-04	ci right 7.579007e-04	k: 212	n:320000
Cons ci ratio: 8.061769e-02	ci left: 7.038583e-03	ci right 7.632891e-03	k: 2346	n:320000
KS ci ratio: 7.523387e-02	ci left: 8.095882e-03	ci right 8.731819e-03	k: 2691	n:320000
CHRNB2   320000 perm   107 sec   (2981 perm/sec)   p_kst 8.409375e-03   p_cons 7.331250e-03   p_joint 6.625000e-04

Joint ci ratio: 2.691398e-01	ci left: 5.560482e-04	ci right 7.317012e-04	k: 211	n:330000
Cons ci ratio: 7.947525e-02	ci left: 7.027227e-03	ci right 7.611778e-03	k: 2414	n:330000
KS ci ratio: 7.405998e-02	ci left: 8.106295e-03	ci right 8.732687e-03	k: 2777	n:330000
CHRNB2   330000 perm   112 sec   (2943 perm/sec)   p_kst 8.415152e-03   p_cons 7.315152e-03   p_joint 6.393939e-04

Joint ci ratio: 2.685094e-01	ci left: 5.424363e-04	ci right 7.133203e-04	k: 212	n:340000
Cons ci ratio: 7.828481e-02	ci left: 7.033898e-03	ci right 7.609841e-03	k: 2488	n:340000
KS ci ratio: 7.302943e-02	ci left: 8.095952e-03	ci right 8.712470e-03	k: 2856	n:340000
CHRNB2   340000 perm   117 sec   (2906 perm/sec)   p_kst 8.400000e-03   p_cons 7.317647e-03   p_joint 6.235294e-04

Joint ci ratio: 2.737041e-01	ci left: 5.056330e-04	ci right 6.685349e-04	k: 204	n:350000
Cons ci ratio: 7.734416e-02	ci left: 7.003820e-03	ci right 7.570098e-03	k: 2549	n:350000
KS ci ratio: 7.217722e-02	ci left: 8.055392e-03	ci right 8.661362e-03	k: 2924	n:350000
CHRNB2   350000 perm   122 sec   (2871 perm/sec)   p_kst 8.354286e-03   p_cons 7.282857e-03   p_joint 5.828571e-04

Joint ci ratio: 2.697845e-01	ci left: 5.071189e-04	ci right 6.677638e-04	k: 210	n:360000
Cons ci ratio: 7.628958e-02	ci left: 7.002703e-03	ci right 7.560828e-03	k: 2620	n:360000
KS ci ratio: 7.123425e-02	ci left: 8.044411e-03	ci right 8.641322e-03	k: 3002	n:360000
CHRNB2   360000 perm   127 sec   (2835 perm/sec)   p_kst 8.338889e-03   p_cons 7.277778e-03   p_joint 5.833333e-04

Joint ci ratio: 2.685163e-01	ci left: 4.984534e-04	ci right 6.554859e-04	k: 212	n:370000
Cons ci ratio: 7.553179e-02	ci left: 6.953958e-03	ci right 7.502451e-03	k: 2673	n:370000
KS ci ratio: 7.029279e-02	ci left: 8.042039e-03	ci right 8.630565e-03	k: 3083	n:370000
CHRNB2   370000 perm   132 sec   (2799 perm/sec)   p_kst 8.332432e-03   p_cons 7.224324e-03   p_joint 5.729730e-04

Joint ci ratio: 2.685183e-01	ci left: 4.853357e-04	ci right 6.382370e-04	k: 212	n:380000
Cons ci ratio: 7.446676e-02	ci left: 6.969792e-03	ci right 7.511447e-03	k: 2750	n:380000
KS ci ratio: 6.939875e-02	ci left: 8.037255e-03	ci right 8.617649e-03	k: 3163	n:380000
CHRNB2   380000 perm   138 sec   (2758 perm/sec)   p_kst 8.323684e-03   p_cons 7.236842e-03   p_joint 5.578947e-04

Joint ci ratio: 2.865897e-01	ci left: 4.108567e-04	ci right 5.505857e-04	k: 186	n:390000
Cons ci ratio: 7.345863e-02	ci left: 6.982349e-03	ci right 7.517319e-03	k: 2826	n:390000
KS ci ratio: 6.839992e-02	ci left: 8.065528e-03	ci right 8.639248e-03	k: 3256	n:390000
CHRNB2   390000 perm   143 sec   (2724 perm/sec)   p_kst 8.348718e-03   p_cons 7.246154e-03   p_joint 4.769231e-04

Joint ci ratio: 2.843188e-01	ci left: 4.075483e-04	ci right 5.448567e-04	k: 189	n:400000
Cons ci ratio: 7.245267e-02	ci left: 7.001689e-03	ci right 7.530486e-03	k: 2905	n:400000
KS ci ratio: 6.761622e-02	ci left: 8.050657e-03	ci right 8.616500e-03	k: 3332	n:400000
CHRNB2   400000 perm   149 sec   (2688 perm/sec)   p_kst 8.330000e-03   p_cons 7.262500e-03   p_joint 4.725000e-04

Joint ci ratio: 2.799327e-01	ci left: 4.112071e-04	ci right 5.472341e-04	k: 195	n:410000
Cons ci ratio: 7.153523e-02	ci left: 7.010551e-03	ci right 7.533034e-03	k: 2980	n:410000
KS ci ratio: 6.670120e-02	ci left: 8.074924e-03	ci right 8.634496e-03	k: 3424	n:410000
CHRNB2   410000 perm   155 sec   (2653 perm/sec)   p_kst 8.351220e-03   p_cons 7.268293e-03   p_joint 4.756098e-04

Joint ci ratio: 2.771195e-01	ci left: 4.102752e-04	ci right 5.443921e-04	k: 199	n:420000
Cons ci ratio: 7.062850e-02	ci left: 7.023709e-03	ci right 7.540266e-03	k: 3057	n:420000
KS ci ratio: 6.603093e-02	ci left: 8.046561e-03	ci right 8.598350e-03	k: 3494	n:420000
CHRNB2   420000 perm   160 sec   (2619 perm/sec)   p_kst 8.319048e-03   p_cons 7.278571e-03   p_joint 4.738095e-04

Joint ci ratio: 2.737191e-01	ci left: 4.115589e-04	ci right 5.441606e-04	k: 204	n:430000
Cons ci ratio: 6.990155e-02	ci left: 7.006587e-03	ci right 7.516365e-03	k: 3121	n:430000
KS ci ratio: 6.531583e-02	ci left: 8.035559e-03	ci right 8.580400e-03	k: 3571	n:430000
CHRNB2   430000 perm   166 sec   (2588 perm/sec)   p_kst 8.304651e-03   p_cons 7.258140e-03   p_joint 4.744186e-04

Joint ci ratio: 2.717385e-01	ci left: 4.085572e-04	ci right 5.390768e-04	k: 207	n:440000
Cons ci ratio: 6.905481e-02	ci left: 7.019308e-03	ci right 7.523577e-03	k: 3198	n:440000
KS ci ratio: 6.464134e-02	ci left: 8.020616e-03	ci right 8.558617e-03	k: 3646	n:440000
CHRNB2   440000 perm   172 sec   (2559 perm/sec)   p_kst 8.286364e-03   p_cons 7.268182e-03   p_joint 4.704545e-04

Joint ci ratio: 2.710888e-01	ci left: 4.015489e-04	ci right 5.294707e-04	k: 208	n:450000
Cons ci ratio: 6.840659e-02	ci left: 6.996546e-03	ci right 7.494275e-03	k: 3259	n:450000
KS ci ratio: 6.398732e-02	ci left: 8.006364e-03	ci right 8.537774e-03	k: 3721	n:450000
CHRNB2   450000 perm   178 sec   (2532 perm/sec)   p_kst 8.268889e-03   p_cons 7.242222e-03   p_joint 4.622222e-04

Joint ci ratio: 2.660439e-01	ci left: 4.090403e-04	ci right 5.365195e-04	k: 216	n:460000
Cons ci ratio: 6.772495e-02	ci left: 6.985482e-03	ci right 7.477277e-03	k: 3325	n:460000
KS ci ratio: 6.316848e-02	ci left: 8.039834e-03	ci right 8.566387e-03	k: 3818	n:460000
CHRNB2   460000 perm   184 sec   (2506 perm/sec)   p_kst 8.300000e-03   p_cons 7.228261e-03   p_joint 4.695652e-04

Joint ci ratio: 2.601164e-01	ci left: 4.202114e-04	ci right 5.477801e-04	k: 226	n:470000
Cons ci ratio: 6.693421e-02	ci left: 7.002112e-03	ci right 7.489099e-03	k: 3404	n:470000
KS ci ratio: 6.233216e-02	ci left: 8.084490e-03	ci right 8.606705e-03	k: 3921	n:470000
CHRNB2   470000 perm   190 sec   (2478 perm/sec)   p_kst 8.342553e-03   p_cons 7.242553e-03   p_joint 4.808511e-04

Joint ci ratio: 2.572981e-01	ci left: 4.211982e-04	ci right 5.474587e-04	k: 231	n:480000
Cons ci ratio: 6.622801e-02	ci left: 7.005786e-03	ci right 7.487690e-03	k: 3477	n:480000
KS ci ratio: 6.172957e-02	ci left: 8.073990e-03	ci right 8.590304e-03	k: 3998	n:480000
CHRNB2   480000 perm   196 sec   (2453 perm/sec)   p_kst 8.329167e-03   p_cons 7.243750e-03   p_joint 4.812500e-04

Joint ci ratio: 2.551085e-01	ci left: 4.202414e-04	ci right 5.449724e-04	k: 235	n:490000
Cons ci ratio: 6.563685e-02	ci left: 6.989261e-03	ci right 7.465574e-03	k: 3540	n:490000
KS ci ratio: 6.123508e-02	ci left: 8.039824e-03	ci right 8.549689e-03	k: 4063	n:490000
CHRNB2   490000 perm   202 sec   (2427 perm/sec)   p_kst 8.291837e-03   p_cons 7.224490e-03   p_joint 4.795918e-04

Joint ci ratio: 2.508908e-01	ci left: 4.268224e-04	ci right 5.510850e-04	k: 243	n:500000
Cons ci ratio: 6.485313e-02	ci left: 7.018673e-03	ci right 7.491064e-03	k: 3626	n:500000
KS ci ratio: 6.072263e-02	ci left: 8.014920e-03	ci right 8.518803e-03	k: 4132	n:500000
CHRNB2   500000 perm   208 sec   (2402 perm/sec)   p_kst 8.264000e-03   p_cons 7.252000e-03   p_joint 4.860000e-04

Joint ci ratio: 2.483590e-01	ci left: 4.276440e-04	ci right 5.506954e-04	k: 248	n:510000
Cons ci ratio: 6.428895e-02	ci left: 7.004514e-03	ci right 7.471698e-03	k: 3690	n:510000
KS ci ratio: 6.015789e-02	ci left: 8.008394e-03	ci right 8.507021e-03	k: 4210	n:510000
CHRNB2   510000 perm   214 sec   (2379 perm/sec)   p_kst 8.254902e-03   p_cons 7.235294e-03   p_joint 4.862745e-04

Joint ci ratio: 2.468767e-01	ci left: 4.248312e-04	ci right 5.462317e-04	k: 251	n:520000
Cons ci ratio: 6.375635e-02	ci left: 6.987132e-03	ci right 7.449154e-03	k: 3752	n:520000
KS ci ratio: 5.949684e-02	ci left: 8.032454e-03	ci right 8.526894e-03	k: 4304	n:520000
CHRNB2   520000 perm   221 sec   (2356 perm/sec)   p_kst 8.276923e-03   p_cons 7.215385e-03   p_joint 4.826923e-04

Joint ci ratio: 1.921182e-01	ci left: 7.095121e-04	ci right 8.620681e-04	k: 415	n:530000
Cons ci ratio: 6.317842e-02	ci left: 6.983421e-03	ci right 7.440859e-03	k: 3821	n:530000
KS ci ratio: 5.894499e-02	ci left: 8.031465e-03	ci right 8.521103e-03	k: 4385	n:530000
CHRNB2   530000 perm   227 sec   (2334 perm/sec)   p_kst 8.273585e-03   p_cons 7.209434e-03   p_joint 7.830189e-04

Joint ci ratio: 1.902971e-01	ci left: 7.104786e-04	ci right 8.616269e-04	k: 423	n:540000
Cons ci ratio: 6.259161e-02	ci left: 6.985335e-03	ci right 7.438494e-03	k: 3893	n:540000
KS ci ratio: 5.841481e-02	ci left: 8.028709e-03	ci right 8.513626e-03	k: 4465	n:540000
CHRNB2   540000 perm   234 sec   (2312 perm/sec)   p_kst 8.268519e-03   p_cons 7.209259e-03   p_joint 7.833333e-04

Joint ci ratio: 1.880916e-01	ci left: 7.148817e-04	ci right 8.650028e-04	k: 433	n:550000
Cons ci ratio: 6.205239e-02	ci left: 6.980038e-03	ci right 7.428813e-03	k: 3961	n:550000
KS ci ratio: 5.789226e-02	ci left: 8.027863e-03	ci right 8.508247e-03	k: 4546	n:550000
CHRNB2   550000 perm   240 sec   (2290 perm/sec)   p_kst 8.265455e-03   p_cons 7.201818e-03   p_joint 7.872727e-04

Joint ci ratio: 1.868051e-01	ci left: 7.123274e-04	ci right 8.607729e-04	k: 439	n:560000
Cons ci ratio: 6.154225e-02	ci left: 6.971430e-03	ci right 7.415834e-03	k: 4027	n:560000
KS ci ratio: 5.730862e-02	ci left: 8.048190e-03	ci right 8.524775e-03	k: 4639	n:560000
CHRNB2   560000 perm   247 sec   (2269 perm/sec)   p_kst 8.283929e-03   p_cons 7.191071e-03   p_joint 7.839286e-04

Joint ci ratio: 1.506797e-01	ci left: 1.096595e-03	ci right 1.276957e-03	k: 675	n:570000
Cons ci ratio: 6.101448e-02	ci left: 6.970049e-03	ci right 7.410421e-03	k: 4097	n:570000
KS ci ratio: 5.673624e-02	ci left: 8.069557e-03	ci right 8.542478e-03	k: 4733	n:570000
CHRNB2   570000 perm   254 sec   (2248 perm/sec)   p_kst 8.303509e-03   p_cons 7.187719e-03   p_joint 1.184211e-03

Joint ci ratio: 1.490348e-01	ci left: 1.102581e-03	ci right 1.281772e-03	k: 690	n:580000
Cons ci ratio: 6.055129e-02	ci left: 6.956844e-03	ci right 7.392928e-03	k: 4160	n:580000
KS ci ratio: 5.628658e-02	ci left: 8.059609e-03	ci right 8.528081e-03	k: 4809	n:580000
CHRNB2   580000 perm   261 sec   (2226 perm/sec)   p_kst 8.291379e-03   p_cons 7.172414e-03   p_joint 1.189655e-03

Joint ci ratio: 1.482863e-01	ci left: 1.095316e-03	ci right 1.272353e-03	k: 697	n:590000
Cons ci ratio: 5.999842e-02	ci left: 6.967474e-03	ci right 7.400098e-03	k: 4237	n:590000
KS ci ratio: 5.578415e-02	ci left: 8.068398e-03	ci right 8.533060e-03	k: 4896	n:590000
CHRNB2   590000 perm   267 sec   (2206 perm/sec)   p_kst 8.298305e-03   p_cons 7.181356e-03   p_joint 1.181356e-03

Joint ci ratio: 1.473398e-01	ci left: 1.091506e-03	ci right 1.266701e-03	k: 706	n:600000
Cons ci ratio: 5.948126e-02	ci left: 6.972841e-03	ci right 7.401938e-03	k: 4311	n:600000
KS ci ratio: 5.532293e-02	ci left: 8.068693e-03	ci right 8.529407e-03	k: 4978	n:600000
CHRNB2   600000 perm   275 sec   (2184 perm/sec)   p_kst 8.296667e-03   p_cons 7.185000e-03   p_joint 1.176667e-03

Joint ci ratio: 1.463089e-01	ci left: 1.089403e-03	ci right 1.262931e-03	k: 716	n:610000
Cons ci ratio: 5.897724e-02	ci left: 6.978048e-03	ci right 7.403702e-03	k: 4385	n:610000
KS ci ratio: 5.489484e-02	ci left: 8.062525e-03	ci right 8.519212e-03	k: 5056	n:610000
CHRNB2   610000 perm   282 sec   (2164 perm/sec)   p_kst 8.288525e-03   p_cons 7.188525e-03   p_joint 1.173770e-03

Joint ci ratio: 1.514740e-01	ci left: 9.972925e-04	ci right 1.162265e-03	k: 668	n:620000
Cons ci ratio: 5.848582e-02	ci left: 6.983101e-03	ci right 7.405394e-03	k: 4459	n:620000
KS ci ratio: 5.451402e-02	ci left: 8.045432e-03	ci right 8.497890e-03	k: 5127	n:620000
CHRNB2   620000 perm   289 sec   (2144 perm/sec)   p_kst 8.269355e-03   p_cons 7.191935e-03   p_joint 1.077419e-03

Joint ci ratio: 1.509118e-01	ci left: 9.890984e-04	ci right 1.152053e-03	k: 673	n:630000
Cons ci ratio: 5.798073e-02	ci left: 6.994266e-03	ci right 7.413459e-03	k: 4537	n:630000
KS ci ratio: 5.402588e-02	ci left: 8.063345e-03	ci right 8.512623e-03	k: 5220	n:630000
CHRNB2   630000 perm   297 sec   (2123 perm/sec)   p_kst 8.285714e-03   p_cons 7.201587e-03   p_joint 1.068254e-03

Joint ci ratio: 1.498047e-01	ci left: 9.886809e-04	ci right 1.150265e-03	k: 683	n:640000
Cons ci ratio: 5.746969e-02	ci left: 7.009718e-03	ci right 7.426011e-03	k: 4618	n:640000
KS ci ratio: 5.361168e-02	ci left: 8.062214e-03	ci right 8.507879e-03	k: 5301	n:640000
CHRNB2   640000 perm   304 sec   (2104 perm/sec)   p_kst 8.282813e-03   p_cons 7.215625e-03   p_joint 1.067187e-03

Joint ci ratio: 1.505792e-01	ci left: 9.631049e-04	ci right 1.121396e-03	k: 676	n:650000
Cons ci ratio: 5.699637e-02	ci left: 7.018643e-03	ci right 7.431921e-03	k: 4695	n:650000
KS ci ratio: 5.323181e-02	ci left: 8.053540e-03	ci right 8.495474e-03	k: 5377	n:650000
CHRNB2   650000 perm   312 sec   (2086 perm/sec)   p_kst 8.272308e-03   p_cons 7.223077e-03   p_joint 1.040000e-03

Joint ci ratio: 1.496976e-01	ci left: 9.601782e-04	ci right 1.116982e-03	k: 684	n:660000
Cons ci ratio: 5.654052e-02	ci left: 7.025818e-03	ci right 7.436101e-03	k: 4771	n:660000
KS ci ratio: 5.283060e-02	ci left: 8.054112e-03	ci right 8.492645e-03	k: 5459	n:660000
CHRNB2   660000 perm   319 sec   (2067 perm/sec)   p_kst 8.271212e-03   p_cons 7.228788e-03   p_joint 1.036364e-03

Joint ci ratio: 1.484032e-01	ci left: 9.630898e-04	ci right 1.118888e-03	k: 696	n:670000
Cons ci ratio: 5.611292e-02	ci left: 7.028376e-03	ci right 7.435604e-03	k: 4844	n:670000
KS ci ratio: 5.247654e-02	ci left: 8.042894e-03	ci right 8.477792e-03	k: 5533	n:670000
CHRNB2   670000 perm   327 sec   (2048 perm/sec)   p_kst 8.258209e-03   p_cons 7.229851e-03   p_joint 1.038806e-03

Joint ci ratio: 1.474544e-01	ci left: 9.616720e-04	ci right 1.116159e-03	k: 705	n:680000
Cons ci ratio: 5.569488e-02	ci left: 7.030870e-03	ci right 7.435110e-03	k: 4917	n:680000
KS ci ratio: 5.209204e-02	ci left: 8.043628e-03	ci right 8.475283e-03	k: 5615	n:680000
CHRNB2   680000 perm   335 sec   (2029 perm/sec)   p_kst 8.257353e-03   p_cons 7.230882e-03   p_joint 1.036765e-03

Joint ci ratio: 1.463189e-01	ci left: 9.630909e-04	ci right 1.116510e-03	k: 716	n:690000
Cons ci ratio: 5.524147e-02	ci left: 7.044738e-03	ci right 7.446373e-03	k: 4998	n:690000
KS ci ratio: 5.162005e-02	ci left: 8.074397e-03	ci right 8.503660e-03	k: 5718	n:690000
CHRNB2   690000 perm   343 sec   (2010 perm/sec)   p_kst 8.286957e-03   p_cons 7.243478e-03   p_joint 1.037681e-03

Joint ci ratio: 1.452092e-01	ci left: 9.644737e-04	ci right 1.116847e-03	k: 727	n:700000
Cons ci ratio: 5.487518e-02	ci left: 7.038494e-03	ci right 7.437028e-03	k: 5065	n:700000
KS ci ratio: 5.127177e-02	ci left: 8.069043e-03	ci right 8.495042e-03	k: 5796	n:700000
CHRNB2   700000 perm   351 sec   (1993 perm/sec)   p_kst 8.280000e-03   p_cons 7.235714e-03   p_joint 1.038571e-03

Joint ci ratio: 1.442221e-01	ci left: 9.644641e-04	ci right 1.115711e-03	k: 737	n:710000
Cons ci ratio: 5.449469e-02	ci left: 7.037993e-03	ci right 7.433649e-03	k: 5136	n:710000
KS ci ratio: 5.084761e-02	ci left: 8.090272e-03	ci right 8.513755e-03	k: 5893	n:710000
CHRNB2   710000 perm   360 sec   (1975 perm/sec)   p_kst 8.300000e-03   p_cons 7.233803e-03   p_joint 1.038028e-03

Joint ci ratio: 9.627613e-02	ci left: 2.186597e-03	ci right 2.409104e-03	k: 1653	n:720000
Cons ci ratio: 5.416917e-02	ci left: 7.025183e-03	ci right 7.417686e-03	k: 5198	n:720000
KS ci ratio: 5.048055e-02	ci left: 8.095839e-03	ci right 8.516465e-03	k: 5979	n:720000
CHRNB2   720000 perm   368 sec   (1959 perm/sec)   p_kst 8.304167e-03   p_cons 7.219444e-03   p_joint 2.295833e-03

Outputting figure to mutsig2_images.part000000000038/CHRNB2.5_1533_720000_0.0083042_0.0072194_0.0022958.png
                gene_name: CHRNB2
               theta_stop: 0.096 
                    nperm: 720000 
                     p_ks: 0.0083 
        ci_ks_bounds_left: 0.0081 
       ci_ks_bounds_right: 0.0085 
                   p_cons: 0.0072 
      ci_cons_bounds_left: 0.0070 
     ci_cons_bounds_right: 0.0074 
                  p_joint: 0.0023 
     ci_joint_bounds_left: 0.0022 
    ci_joint_bounds_right: 0.0024 

Current progress: 8 percent done.
CHST6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.546746e-02	ci left: 5.399856e-01	ci right 5.595854e-01	k: 5498	n:10000
KS ci ratio: 1.742710e-02	ci left: 8.275777e-01	ci right 8.422267e-01	k: 8350	n:10000
CHST6   10000 perm   2 sec   (6164 perm/sec)   p_kst 8.350000e-01   p_cons 5.498000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000038/CHST6.5_1192_10000_0.835_0.5498_1.png
                gene_name: CHST6
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 10 percent done.
CILP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.027211e-02	ci left: 7.808694e-01	ci right 7.969620e-01	k: 7890	n:10000
Cons ci ratio: 6.575560e-02	ci left: 2.535008e-01	ci right 2.708379e-01	k: 2621	n:10000
KS ci ratio: 8.809519e-03	ci left: 9.476267e-01	ci right 9.561076e-01	k: 9520	n:10000
CILP   10000 perm   2 sec   (4903 perm/sec)   p_kst 9.520000e-01   p_cons 2.621000e-01   p_joint 7.890000e-01

Outputting figure to mutsig2_images.part000000000038/CILP.5_3587_10000_0.952_0.2621_0.789.png
                gene_name: CILP
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 12 percent done.
CLASP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.509389e-02	ci left: 3.267412e-01	ci right 3.453544e-01	k: 3360	n:10000
Cons ci ratio: 2.460214e-02	ci left: 7.084626e-01	ci right 7.262107e-01	k: 7174	n:10000
KS ci ratio: 8.682941e-02	ci left: 1.618987e-01	ci right 1.766945e-01	k: 1692	n:10000
CLASP1   10000 perm   2 sec   (4310 perm/sec)   p_kst 1.692000e-01   p_cons 7.174000e-01   p_joint 3.360000e-01

Outputting figure to mutsig2_images.part000000000038/CLASP1.5_4825_10000_0.1692_0.7174_0.336.png
                gene_name: CLASP1
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 15 percent done.
CLASP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.510425e-01	ci left: 5.831582e-02	ci right 6.794061e-02	k: 630	n:10000
Cons ci ratio: 3.263356e-02	ci left: 5.808872e-01	ci right 6.002600e-01	k: 5906	n:10000
KS ci ratio: 2.118569e-01	ci left: 2.958536e-02	ci right 3.669001e-02	k: 330	n:10000
CLASP2   10000 perm   2 sec   (4028 perm/sec)   p_kst 3.300000e-02   p_cons 5.906000e-01   p_joint 6.300000e-02

Joint ci ratio: 1.024948e-01	ci left: 6.464664e-02	ci right 7.167954e-02	k: 1362	n:20000
Cons ci ratio: 2.320577e-02	ci left: 5.810410e-01	ci right 5.947334e-01	k: 11758	n:20000
KS ci ratio: 1.515943e-01	ci left: 2.989297e-02	ci right 3.484421e-02	k: 646	n:20000
CLASP2   20000 perm   5 sec   (3753 perm/sec)   p_kst 3.230000e-02   p_cons 5.879000e-01   p_joint 6.810000e-02

Joint ci ratio: 8.278910e-02	ci left: 6.664747e-02	ci right 7.243623e-02	k: 2085	n:30000
Cons ci ratio: 1.930846e-02	ci left: 5.731219e-01	ci right 5.843295e-01	k: 17362	n:30000
KS ci ratio: 1.239423e-01	ci left: 3.026347e-02	ci right 3.429444e-02	k: 967	n:30000
CLASP2   30000 perm   8 sec   (3617 perm/sec)   p_kst 3.223333e-02   p_cons 5.787333e-01   p_joint 6.950000e-02

Joint ci ratio: 6.061774e-02	ci left: 9.177363e-02	ci right 9.753537e-02	k: 3785	n:40000
Cons ci ratio: 1.667496e-02	ci left: 5.752452e-01	ci right 5.849432e-01	k: 23204	n:40000
KS ci ratio: 1.066423e-01	ci left: 3.092988e-02	ci right 3.443839e-02	k: 1306	n:40000
CLASP2   40000 perm   11 sec   (3531 perm/sec)   p_kst 3.265000e-02   p_cons 5.801000e-01   p_joint 9.462500e-02

Joint ci ratio: 6.288042e-02	ci left: 6.984773e-02	ci right 7.440209e-02	k: 3605	n:50000
Cons ci ratio: 1.490789e-02	ci left: 5.759797e-01	ci right 5.846509e-01	k: 29016	n:50000
KS ci ratio: 9.714199e-02	ci left: 3.000580e-02	ci right 3.308890e-02	k: 1576	n:50000
CLASP2   50000 perm   15 sec   (3436 perm/sec)   p_kst 3.152000e-02   p_cons 5.803200e-01   p_joint 7.210000e-02

Outputting figure to mutsig2_images.part000000000038/CLASP2.5_4673_50000_0.03152_0.58032_0.0721.png
                gene_name: CLASP2
               theta_stop: 0.097 
                    nperm: 50000 
                     p_ks: 0.032 
        ci_ks_bounds_left: 0.030 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.072 
     ci_joint_bounds_left: 0.070 
    ci_joint_bounds_right: 0.074 

Current progress: 17 percent done.
CLCA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.721807e-02	ci left: 8.309356e-01	ci right 8.454668e-01	k: 8383	n:10000
Cons ci ratio: 1.967418e-02	ci left: 7.908060e-01	ci right 8.066196e-01	k: 7988	n:10000
KS ci ratio: 2.873724e-02	ci left: 6.409613e-01	ci right 6.597510e-01	k: 6504	n:10000
CLCA2   10000 perm   2 sec   (5042 perm/sec)   p_kst 6.504000e-01   p_cons 7.988000e-01   p_joint 8.383000e-01

Outputting figure to mutsig2_images.part000000000038/CLCA2.5_2888_10000_0.6504_0.7988_0.8383.png
                gene_name: CLCA2
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 19 percent done.
CHRNB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.702786e-01	ci left: 1.781300e-02	ci right 2.347108e-02	k: 205	n:10000
Cons ci ratio: 1.443225e-01	ci left: 6.372193e-02	ci right 7.373108e-02	k: 686	n:10000
KS ci ratio: 2.318040e-01	ci left: 2.457161e-02	ci right 3.110733e-02	k: 277	n:10000
CHRNB4   10000 perm   2 sec   (6143 perm/sec)   p_kst 2.770000e-02   p_cons 6.860000e-02   p_joint 2.050000e-02

Joint ci ratio: 1.553563e-01	ci left: 2.844890e-02	ci right 3.328876e-02	k: 616	n:20000
Cons ci ratio: 9.819427e-02	ci left: 7.016491e-02	ci right 7.745958e-02	k: 1475	n:20000
KS ci ratio: 1.601038e-01	ci left: 2.676609e-02	ci right 3.147214e-02	k: 581	n:20000
CHRNB4   20000 perm   4 sec   (5402 perm/sec)   p_kst 2.905000e-02   p_cons 7.375000e-02   p_joint 3.080000e-02

Joint ci ratio: 1.101102e-01	ci left: 3.829725e-02	ci right 4.279228e-02	k: 1215	n:30000
Cons ci ratio: 7.986470e-02	ci left: 7.135698e-02	ci right 7.732577e-02	k: 2229	n:30000
KS ci ratio: 1.298848e-01	ci left: 2.754976e-02	ci right 3.140874e-02	k: 883	n:30000
CHRNB4   30000 perm   6 sec   (5130 perm/sec)   p_kst 2.943333e-02   p_cons 7.430000e-02   p_joint 4.050000e-02

Joint ci ratio: 9.929693e-02	ci left: 3.563493e-02	ci right 3.938259e-02	k: 1499	n:40000
Cons ci ratio: 6.842620e-02	ci left: 7.322456e-02	ci right 7.843721e-02	k: 3032	n:40000
KS ci ratio: 1.112104e-01	ci left: 2.844726e-02	ci right 3.182141e-02	k: 1204	n:40000
CHRNB4   40000 perm   8 sec   (4950 perm/sec)   p_kst 3.010000e-02   p_cons 7.580000e-02   p_joint 3.747500e-02

Joint ci ratio: 9.726944e-02	ci left: 2.992769e-02	ci right 3.300703e-02	k: 1572	n:50000
Cons ci ratio: 6.123079e-02	ci left: 7.343556e-02	ci right 7.809384e-02	k: 3787	n:50000
KS ci ratio: 9.853781e-02	ci left: 2.916622e-02	ci right 3.220859e-02	k: 1533	n:50000
CHRNB4   50000 perm   10 sec   (4772 perm/sec)   p_kst 3.066000e-02   p_cons 7.574000e-02   p_joint 3.144000e-02

Outputting figure to mutsig2_images.part000000000038/CHRNB4.4_1521_50000_0.03066_0.07574_0.03144.png
                gene_name: CHRNB4
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.076 
      ci_cons_bounds_left: 0.073 
     ci_cons_bounds_right: 0.078 
                  p_joint: 0.031 
     ci_joint_bounds_left: 0.030 
    ci_joint_bounds_right: 0.033 

Current progress: 21 percent done.
CHRNG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.501136e-02	ci left: 5.463971e-01	ci right 5.659702e-01	k: 5562	n:10000
Cons ci ratio: 6.337758e-02	ci left: 2.678488e-01	ci right 2.854815e-01	k: 2766	n:10000
KS ci ratio: 5.718257e-02	ci left: 3.104639e-01	ci right 3.288413e-01	k: 3196	n:10000
CHRNG   10000 perm   2 sec   (5720 perm/sec)   p_kst 3.196000e-01   p_cons 2.766000e-01   p_joint 5.562000e-01

Outputting figure to mutsig2_images.part000000000038/CHRNG.4_1602_10000_0.3196_0.2766_0.5562.png
                gene_name: CHRNG
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 23 percent done.
CHST2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.685829e-02	ci left: 6.712594e-01	ci right 6.896353e-01	k: 6805	n:10000
Cons ci ratio: 3.440563e-02	ci left: 5.550151e-01	ci right 5.745471e-01	k: 5648	n:10000
KS ci ratio: 4.992358e-02	ci left: 3.717661e-01	ci right 3.909031e-01	k: 3813	n:10000
CHST2   10000 perm   2 sec   (5736 perm/sec)   p_kst 3.813000e-01   p_cons 5.648000e-01   p_joint 6.805000e-01

Outputting figure to mutsig2_images.part000000000038/CHST2.4_1597_10000_0.3813_0.5648_0.6805.png
                gene_name: CHST2
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 25 percent done.
CHST9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.550600e-02	ci left: 2.042211e-01	ci right 2.203469e-01	k: 2122	n:10000
Cons ci ratio: 1.214091e-01	ci left: 8.864084e-02	ci right 1.001967e-01	k: 943	n:10000
KS ci ratio: 1.165822e-02	ci left: 9.132737e-01	ci right 9.240809e-01	k: 9188	n:10000
CHST9   10000 perm   2 sec   (6359 perm/sec)   p_kst 9.188000e-01   p_cons 9.430000e-02   p_joint 2.122000e-01

Joint ci ratio: 4.207506e-02	ci left: 2.962374e-01	ci right 3.090200e-01	k: 6052	n:20000
Cons ci ratio: 8.345583e-02	ci left: 9.518871e-02	ci right 1.035282e-01	k: 1986	n:20000
KS ci ratio: 8.354562e-03	ci left: 9.128354e-01	ci right 9.205429e-01	k: 18335	n:20000
CHST9   20000 perm   4 sec   (5549 perm/sec)   p_kst 9.167500e-01   p_cons 9.930000e-02   p_joint 3.026000e-01

Outputting figure to mutsig2_images.part000000000038/CHST9.4_1352_20000_0.91675_0.0993_0.3026.png
                gene_name: CHST9
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.099 
      ci_cons_bounds_left: 0.095 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 27 percent done.
CIC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.141929e-02	ci left: 1.481542e-01	ci right 1.624472e-01	k: 1552	n:10000
Cons ci ratio: 1.915886e-02	ci left: 7.993290e-01	ci right 8.148917e-01	k: 8072	n:10000
KS ci ratio: 1.634260e-01	ci left: 4.993888e-02	ci right 5.892291e-02	k: 543	n:10000
CIC   10000 perm   2 sec   (4439 perm/sec)   p_kst 5.430000e-02   p_cons 8.072000e-01   p_joint 1.552000e-01

Joint ci ratio: 5.930168e-02	ci left: 1.739561e-01	ci right 1.846373e-01	k: 3585	n:20000
Cons ci ratio: 1.406063e-02	ci left: 7.896909e-01	ci right 8.009231e-01	k: 15907	n:20000
KS ci ratio: 1.108454e-01	ci left: 5.557898e-02	ci right 6.215000e-02	k: 1176	n:20000
CIC   20000 perm   5 sec   (4008 perm/sec)   p_kst 5.880000e-02   p_cons 7.953500e-01   p_joint 1.792500e-01

Joint ci ratio: 6.288613e-02	ci left: 1.110491e-01	ci right 1.182924e-01	k: 3439	n:30000
Cons ci ratio: 1.105628e-02	ci left: 8.028241e-01	ci right 8.117830e-01	k: 24220	n:30000
KS ci ratio: 9.051919e-02	ci left: 5.616410e-02	ci right 6.152173e-02	k: 1764	n:30000
CIC   30000 perm   8 sec   (3849 perm/sec)   p_kst 5.880000e-02   p_cons 8.073333e-01   p_joint 1.146333e-01

Outputting figure to mutsig2_images.part000000000038/CIC.4_4907_30000_0.0588_0.80733_0.11463.png
                gene_name: CIC
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.059 
        ci_ks_bounds_left: 0.056 
       ci_ks_bounds_right: 0.062 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 29 percent done.
CIT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.743866e-02	ci left: 5.130550e-01	ci right 5.327317e-01	k: 5229	n:10000
KS ci ratio: 1.449229e-02	ci left: 8.732655e-01	ci right 8.861124e-01	k: 8798	n:10000
CIT   10000 perm   3 sec   (3773 perm/sec)   p_kst 8.798000e-01   p_cons 5.229000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000038/CIT.4_6268_10000_0.8798_0.5229_1.png
                gene_name: CIT
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 31 percent done.
CKAP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.710281e-02	ci left: 3.994411e-01	ci right 4.188118e-01	k: 4091	n:10000
KS ci ratio: 1.379167e-02	ci left: 8.836011e-01	ci right 8.959708e-01	k: 8899	n:10000
CKAP5   10000 perm   2 sec   (4003 perm/sec)   p_kst 8.899000e-01   p_cons 4.091000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000038/CKAP5.4_6271_10000_0.8899_0.4091_1.png
                gene_name: CKAP5
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 33 percent done.
CLCN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.649036e-02	ci left: 1.999823e-01	ci right 2.159882e-01	k: 2079	n:10000
Cons ci ratio: 9.048988e-02	ci left: 1.508034e-01	ci right 1.651964e-01	k: 1579	n:10000
KS ci ratio: 9.100344e-02	ci left: 1.493316e-01	ci right 1.636692e-01	k: 1564	n:10000
CLCN1   10000 perm   2 sec   (5075 perm/sec)   p_kst 1.564000e-01   p_cons 1.579000e-01   p_joint 2.079000e-01

Outputting figure to mutsig2_images.part000000000038/CLCN1.4_3059_10000_0.1564_0.1579_0.2079.png
                gene_name: CLCN1
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 35 percent done.
CLCN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.525972e-01	ci left: 5.715872e-02	ci right 6.669845e-02	k: 618	n:10000
Cons ci ratio: 3.142636e-02	ci left: 5.990540e-01	ci right 6.182826e-01	k: 6087	n:10000
KS ci ratio: 2.064358e-01	ci left: 3.119896e-02	ci right 3.847528e-02	k: 347	n:10000
CLCN2   10000 perm   2 sec   (5503 perm/sec)   p_kst 3.470000e-02   p_cons 6.087000e-01   p_joint 6.180000e-02

Joint ci ratio: 1.058244e-01	ci left: 6.079280e-02	ci right 6.763456e-02	k: 1283	n:20000
Cons ci ratio: 2.196722e-02	ci left: 6.074124e-01	ci right 6.209543e-01	k: 12284	n:20000
KS ci ratio: 1.444767e-01	ci left: 3.292999e-02	ci right 3.810619e-02	k: 709	n:20000
CLCN2   20000 perm   4 sec   (4872 perm/sec)   p_kst 3.545000e-02   p_cons 6.142000e-01   p_joint 6.415000e-02

Joint ci ratio: 6.704211e-02	ci left: 9.885994e-02	ci right 1.057506e-01	k: 3068	n:30000
Cons ci ratio: 1.762257e-02	ci left: 6.170196e-01	ci right 6.280233e-01	k: 18676	n:30000
KS ci ratio: 1.151907e-01	ci left: 3.502189e-02	ci right 3.933500e-02	k: 1114	n:30000
CLCN2   30000 perm   7 sec   (4599 perm/sec)   p_kst 3.713333e-02   p_cons 6.225333e-01   p_joint 1.022667e-01

Joint ci ratio: 8.274621e-02	ci left: 5.092256e-02	ci right 5.534260e-02	k: 2124	n:40000
Cons ci ratio: 1.527498e-02	ci left: 6.173523e-01	ci right 6.268800e-01	k: 24885	n:40000
KS ci ratio: 9.671361e-02	ci left: 3.753892e-02	ci right 4.137831e-02	k: 1577	n:40000
CLCN2   40000 perm   9 sec   (4453 perm/sec)   p_kst 3.942500e-02   p_cons 6.221250e-01   p_joint 5.310000e-02

Outputting figure to mutsig2_images.part000000000038/CLCN2.4_2793_40000_0.039425_0.62213_0.0531.png
                gene_name: CLCN2
               theta_stop: 0.097 
                    nperm: 40000 
                     p_ks: 0.039 
        ci_ks_bounds_left: 0.038 
       ci_ks_bounds_right: 0.041 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.053 
     ci_joint_bounds_left: 0.051 
    ci_joint_bounds_right: 0.055 

Current progress: 38 percent done.
CLCN5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.280928e-02	ci left: 5.782787e-01	ci right 5.976700e-01	k: 5880	n:10000
Cons ci ratio: 8.837333e-02	ci left: 1.570859e-01	ci right 1.717101e-01	k: 1643	n:10000
KS ci ratio: 2.030254e-02	ci left: 7.803626e-01	ci right 7.964690e-01	k: 7885	n:10000
CLCN5   10000 perm   2 sec   (5275 perm/sec)   p_kst 7.885000e-01   p_cons 1.643000e-01   p_joint 5.880000e-01

Outputting figure to mutsig2_images.part000000000038/CLCN5.4_2503_10000_0.7885_0.1643_0.588.png
                gene_name: CLCN5
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 40 percent done.
CLDN10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.982611e-02	ci left: 6.237671e-01	ci right 6.427552e-01	k: 6333	n:10000
Cons ci ratio: 2.210680e-02	ci left: 7.501892e-01	ci right 7.670598e-01	k: 7587	n:10000
KS ci ratio: 5.511858e-02	ci left: 3.265426e-01	ci right 3.451531e-01	k: 3358	n:10000
CLDN10   10000 perm   2 sec   (6122 perm/sec)   p_kst 3.358000e-01   p_cons 7.587000e-01   p_joint 6.333000e-01

Outputting figure to mutsig2_images.part000000000038/CLDN10.4_925_10000_0.3358_0.7587_0.6333.png
                gene_name: CLDN10
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 42 percent done.
CLDN12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.041364e-02	ci left: 1.842223e-01	ci right 1.997575e-01	k: 1919	n:10000
Cons ci ratio: 7.518634e-03	ci left: 9.607903e-01	ci right 9.681359e-01	k: 9646	n:10000
KS ci ratio: 1.372648e-01	ci left: 7.020239e-02	ci right 8.064655e-02	k: 753	n:10000
CLDN12   10000 perm   2 sec   (5971 perm/sec)   p_kst 7.530000e-02   p_cons 9.646000e-01   p_joint 1.919000e-01

Joint ci ratio: 6.501634e-02	ci left: 1.487765e-01	ci right 1.588244e-01	k: 3075	n:20000
Cons ci ratio: 5.489470e-03	ci left: 9.595672e-01	ci right 9.648973e-01	k: 19246	n:20000
KS ci ratio: 9.758882e-02	ci left: 7.099564e-02	ci right 7.832859e-02	k: 1492	n:20000
CLDN12   20000 perm   4 sec   (5437 perm/sec)   p_kst 7.460000e-02   p_cons 9.623000e-01   p_joint 1.537500e-01

Outputting figure to mutsig2_images.part000000000038/CLDN12.4_739_20000_0.0746_0.9623_0.15375.png
                gene_name: CLDN12
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.075 
        ci_ks_bounds_left: 0.071 
       ci_ks_bounds_right: 0.078 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 44 percent done.
CLDN16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.877030e-02	ci left: 8.057249e-01	ci right 8.210921e-01	k: 8135	n:10000
KS ci ratio: 1.808054e-02	ci left: 8.170019e-01	ci right 8.320086e-01	k: 8246	n:10000
CLDN16   10000 perm   2 sec   (5839 perm/sec)   p_kst 8.246000e-01   p_cons 8.135000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000038/CLDN16.4_938_10000_0.8246_0.8135_1.png
                gene_name: CLDN16
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 46 percent done.
CHRNA9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.382713e-02	ci left: 7.213844e-01	ci right 7.388814e-01	k: 7302	n:10000
KS ci ratio: 2.328950e-02	ci left: 7.303745e-01	ci right 7.476861e-01	k: 7391	n:10000
CHRNA9   10000 perm   2 sec   (6296 perm/sec)   p_kst 7.391000e-01   p_cons 7.302000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000038/CHRNA9.3_1460_10000_0.7391_0.7302_1.png
                gene_name: CHRNA9
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 48 percent done.
CHST8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.100668e-02	ci left: 7.686102e-01	ci right 7.850283e-01	k: 7769	n:10000
KS ci ratio: 2.181702e-02	ci left: 7.550454e-01	ci right 7.718009e-01	k: 7635	n:10000
CHST8   10000 perm   2 sec   (6312 perm/sec)   p_kst 7.635000e-01   p_cons 7.769000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000038/CHST8.3_1287_10000_0.7635_0.7769_1.png
                gene_name: CHST8
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
CHSY3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.045847e-02	ci left: 6.139190e-01	ci right 6.330091e-01	k: 6235	n:10000
Cons ci ratio: 5.853744e-02	ci left: 3.004459e-01	ci right 3.186652e-01	k: 3095	n:10000
KS ci ratio: 2.105514e-02	ci left: 7.678000e-01	ci right 7.842389e-01	k: 7761	n:10000
CHSY3   10000 perm   2 sec   (5945 perm/sec)   p_kst 7.761000e-01   p_cons 3.095000e-01   p_joint 6.235000e-01

Outputting figure to mutsig2_images.part000000000038/CHSY3.3_2661_10000_0.7761_0.3095_0.6235.png
                gene_name: CHSY3
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 52 percent done.
CHTF18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.511523e-02	ci left: 4.203680e-01	ci right 4.398728e-01	k: 4301	n:10000
Cons ci ratio: 9.659224e-02	ci left: 1.345280e-01	ci right 1.482816e-01	k: 1413	n:10000
KS ci ratio: 6.055541e-02	ci left: 2.862707e-01	ci right 3.042488e-01	k: 2952	n:10000
CHTF18   10000 perm   2 sec   (5181 perm/sec)   p_kst 2.952000e-01   p_cons 1.413000e-01   p_joint 4.301000e-01

Outputting figure to mutsig2_images.part000000000038/CHTF18.3_3016_10000_0.2952_0.1413_0.4301.png
                gene_name: CHTF18
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 54 percent done.
CIITA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.791418e-02	ci left: 6.541423e-01	ci right 6.727624e-01	k: 6635	n:10000
Cons ci ratio: 4.618013e-02	ci left: 4.090055e-01	ci right 4.284419e-01	k: 4187	n:10000
KS ci ratio: 4.436868e-02	ci left: 4.285442e-01	ci right 4.480917e-01	k: 4383	n:10000
CIITA   10000 perm   2 sec   (4729 perm/sec)   p_kst 4.383000e-01   p_cons 4.187000e-01   p_joint 6.635000e-01

Outputting figure to mutsig2_images.part000000000038/CIITA.3_3469_10000_0.4383_0.4187_0.6635.png
                gene_name: CIITA
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 56 percent done.
CIRH1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.050197e-02	ci left: 9.280257e-01	ci right 9.379203e-01	k: 9331	n:10000
KS ci ratio: 1.414085e-02	ci left: 8.784825e-01	ci right 8.910923e-01	k: 8849	n:10000
CIRH1A   10000 perm   2 sec   (6274 perm/sec)   p_kst 8.849000e-01   p_cons 9.331000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000038/CIRH1A.3_2125_10000_0.8849_0.9331_1.png
                gene_name: CIRH1A
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 58 percent done.
CKAP2L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.483278e-02	ci left: 7.046281e-01	ci right 7.224473e-01	k: 7136	n:10000
Cons ci ratio: 4.902580e-02	ci left: 3.803239e-01	ci right 3.995402e-01	k: 3899	n:10000
KS ci ratio: 4.232859e-02	ci left: 4.517915e-01	ci right 4.714309e-01	k: 4616	n:10000
CKAP2L   10000 perm   2 sec   (5683 perm/sec)   p_kst 4.616000e-01   p_cons 3.899000e-01   p_joint 7.136000e-01

Outputting figure to mutsig2_images.part000000000038/CKAP2L.3_2274_10000_0.4616_0.3899_0.7136.png
                gene_name: CKAP2L
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 60 percent done.
CKMT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.173608e-02	ci left: 9.122441e-01	ci right 9.231112e-01	k: 9178	n:10000
KS ci ratio: 1.227189e-02	ci left: 9.050431e-01	ci right 9.163163e-01	k: 9108	n:10000
CKMT2   10000 perm   2 sec   (6108 perm/sec)   p_kst 9.108000e-01   p_cons 9.178000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000038/CKMT2.3_1296_10000_0.9108_0.9178_1.png
                gene_name: CKMT2
               theta_stop: 0.012 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
CLCN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.380435e-03	ci left: 9.787712e-01	ci right 9.841431e-01	k: 9816	n:10000
Cons ci ratio: 5.769921e-02	ci left: 3.065949e-01	ci right 3.249125e-01	k: 3157	n:10000
KS ci ratio: 3.209660e-02	ci left: 5.889150e-01	ci right 6.082275e-01	k: 5986	n:10000
CLCN3   10000 perm   2 sec   (5510 perm/sec)   p_kst 5.986000e-01   p_cons 3.157000e-01   p_joint 9.816000e-01

Outputting figure to mutsig2_images.part000000000038/CLCN3.3_2653_10000_0.5986_0.3157_0.9816.png
                gene_name: CLCN3
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 65 percent done.
CLCN7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.731236e-02	ci left: 1.965332e-01	ci right 2.124394e-01	k: 2044	n:10000
Cons ci ratio: 4.908768e-02	ci left: 3.797268e-01	ci right 3.989377e-01	k: 3893	n:10000
KS ci ratio: 9.796826e-02	ci left: 1.311983e-01	ci right 1.448133e-01	k: 1379	n:10000
CLCN7   10000 perm   2 sec   (5422 perm/sec)   p_kst 1.379000e-01   p_cons 3.893000e-01   p_joint 2.044000e-01

Outputting figure to mutsig2_images.part000000000038/CLCN7.3_2518_10000_0.1379_0.3893_0.2044.png
                gene_name: CLCN7
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 67 percent done.
CHRNB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.862839e-01	ci left: 3.843896e-02	ci right 4.643037e-02	k: 423	n:10000
KS ci ratio: 3.338123e-02	ci left: 5.698531e-01	ci right 5.893005e-01	k: 5796	n:10000
CHRNB3   10000 perm   2 sec   (6363 perm/sec)   p_kst 5.796000e-01   p_cons 4.230000e-02   p_joint 1

Joint ci ratio: 6.737528e-03	ci left: 9.409801e-01	ci right 9.473900e-01	k: 18885	n:20000
Cons ci ratio: 1.273200e-01	ci left: 4.236218e-02	ci right 4.817095e-02	k: 904	n:20000
KS ci ratio: 2.295524e-02	ci left: 5.863037e-01	ci right 5.999693e-01	k: 11863	n:20000
CHRNB3   20000 perm   4 sec   (5436 perm/sec)   p_kst 5.931500e-01   p_cons 4.520000e-02   p_joint 9.442500e-01

Joint ci ratio: 5.468260e-03	ci left: 9.422239e-01	ci right 9.474229e-01	k: 28346	n:30000
Cons ci ratio: 1.042592e-01	ci left: 4.264917e-02	ci right 4.737279e-02	k: 1349	n:30000
KS ci ratio: 1.866372e-02	ci left: 5.896199e-01	ci right 6.007617e-01	k: 17856	n:30000
CHRNB3   30000 perm   6 sec   (5131 perm/sec)   p_kst 5.952000e-01   p_cons 4.496667e-02   p_joint 9.448667e-01

Joint ci ratio: 4.689391e-03	ci left: 9.436126e-01	ci right 9.480724e-01	k: 37835	n:40000
Cons ci ratio: 8.913099e-02	ci left: 4.406547e-02	ci right 4.820074e-02	k: 1844	n:40000
KS ci ratio: 1.617766e-02	ci left: 5.899447e-01	ci right 5.995916e-01	k: 23791	n:40000
CHRNB3   40000 perm   8 sec   (5002 perm/sec)   p_kst 5.947750e-01   p_cons 4.610000e-02   p_joint 9.458750e-01

Outputting figure to mutsig2_images.part000000000038/CHRNB3.2_1401_40000_0.59478_0.0461_0.94588.png
                gene_name: CHRNB3
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.046 
      ci_cons_bounds_left: 0.044 
     ci_cons_bounds_right: 0.048 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 69 percent done.
CHST1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.712888e-03	ci left: 9.486681e-01	ci right 9.570656e-01	k: 9530	n:10000
Cons ci ratio: 2.916180e-02	ci left: 6.342228e-01	ci right 6.530934e-01	k: 6437	n:10000
KS ci ratio: 8.321448e-02	ci left: 1.739892e-01	ci right 1.891967e-01	k: 1815	n:10000
CHST1   10000 perm   2 sec   (6571 perm/sec)   p_kst 1.815000e-01   p_cons 6.437000e-01   p_joint 9.530000e-01

Outputting figure to mutsig2_images.part000000000038/CHST1.2_1240_10000_0.1815_0.6437_0.953.png
                gene_name: CHST1
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 71 percent done.
CHST11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.886299e-02	ci left: 8.042017e-01	ci right 8.196161e-01	k: 8120	n:10000
KS ci ratio: 2.250506e-02	ci left: 7.435143e-01	ci right 7.605386e-01	k: 7521	n:10000
CHST11   10000 perm   1 sec   (6697 perm/sec)   p_kst 7.521000e-01   p_cons 8.120000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000038/CHST11.2_1071_10000_0.7521_0.812_1.png
                gene_name: CHST11
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
CHST3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.264156e-01	ci left: 2.579881e-02	ci right 3.247924e-02	k: 290	n:10000
Cons ci ratio: 3.878868e-02	ci left: 4.953504e-01	ci right 5.150466e-01	k: 5052	n:10000
KS ci ratio: 2.458026e-01	ci left: 2.174701e-02	ci right 2.793403e-02	k: 247	n:10000
CHST3   10000 perm   2 sec   (6425 perm/sec)   p_kst 2.470000e-02   p_cons 5.052000e-01   p_joint 2.900000e-02

Joint ci ratio: 1.618303e-01	ci left: 2.618962e-02	ci right 3.084880e-02	k: 569	n:20000
Cons ci ratio: 2.760311e-02	ci left: 4.950957e-01	ci right 5.090037e-01	k: 10041	n:20000
KS ci ratio: 1.743543e-01	ci left: 2.249752e-02	ci right 2.684217e-02	k: 492	n:20000
CHST3   20000 perm   4 sec   (5562 perm/sec)   p_kst 2.460000e-02   p_cons 5.020500e-01   p_joint 2.845000e-02

Joint ci ratio: 1.222558e-01	ci left: 3.110427e-02	ci right 3.518680e-02	k: 993	n:30000
Cons ci ratio: 2.253315e-02	ci left: 4.964921e-01	ci right 5.078408e-01	k: 15065	n:30000
KS ci ratio: 1.431066e-01	ci left: 2.265144e-02	ci right 2.617482e-02	k: 731	n:30000
CHST3   30000 perm   6 sec   (5204 perm/sec)   p_kst 2.436667e-02   p_cons 5.021667e-01   p_joint 3.310000e-02

Joint ci ratio: 1.056847e-01	ci left: 3.149009e-02	ci right 3.502809e-02	k: 1329	n:40000
Cons ci ratio: 1.948592e-02	ci left: 4.979876e-01	ci right 5.078120e-01	k: 20116	n:40000
KS ci ratio: 1.242610e-01	ci left: 2.276466e-02	ci right 2.580494e-02	k: 970	n:40000
CHST3   40000 perm   8 sec   (5044 perm/sec)   p_kst 2.425000e-02   p_cons 5.029000e-01   p_joint 3.322500e-02

Joint ci ratio: 9.419107e-02	ci left: 3.190084e-02	ci right 3.507362e-02	k: 1673	n:50000
Cons ci ratio: 1.744840e-02	ci left: 4.979474e-01	ci right 5.067323e-01	k: 25117	n:50000
KS ci ratio: 1.107575e-01	ci left: 2.308476e-02	ci right 2.581084e-02	k: 1221	n:50000
CHST3   50000 perm   10 sec   (4908 perm/sec)   p_kst 2.442000e-02   p_cons 5.023400e-01   p_joint 3.346000e-02

Joint ci ratio: 8.600214e-02	ci left: 3.202553e-02	ci right 3.491983e-02	k: 2007	n:60000
Cons ci ratio: 1.590349e-02	ci left: 4.991076e-01	ci right 5.071255e-01	k: 30187	n:60000
KS ci ratio: 1.013700e-01	ci left: 2.308265e-02	ci right 2.556365e-02	k: 1458	n:60000
CHST3   60000 perm   13 sec   (4788 perm/sec)   p_kst 2.430000e-02   p_cons 5.031167e-01   p_joint 3.345000e-02

Joint ci ratio: 8.022092e-02	ci left: 3.166089e-02	ci right 3.432086e-02	k: 2308	n:70000
Cons ci ratio: 1.475970e-02	ci left: 4.981889e-01	ci right 5.056110e-01	k: 35133	n:70000
KS ci ratio: 9.448294e-02	ci left: 2.286488e-02	ci right 2.514624e-02	k: 1679	n:70000
CHST3   70000 perm   15 sec   (4606 perm/sec)   p_kst 2.398571e-02   p_cons 5.019000e-01   p_joint 3.297143e-02

Outputting figure to mutsig2_images.part000000000038/CHST3.2_1448_70000_0.023986_0.5019_0.032971.png
                gene_name: CHST3
               theta_stop: 0.094 
                    nperm: 70000 
                     p_ks: 0.024 
        ci_ks_bounds_left: 0.023 
       ci_ks_bounds_right: 0.025 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.033 
     ci_joint_bounds_left: 0.032 
    ci_joint_bounds_right: 0.034 

Current progress: 75 percent done.
CHST4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.134564e-02	ci left: 4.634731e-01	ci right 4.831424e-01	k: 4733	n:10000
Cons ci ratio: 2.363374e-02	ci left: 7.246163e-01	ci right 7.420476e-01	k: 7334	n:10000
KS ci ratio: 9.867446e-02	ci left: 1.295340e-01	ci right 1.430787e-01	k: 1362	n:10000
CHST4   10000 perm   2 sec   (6524 perm/sec)   p_kst 1.362000e-01   p_cons 7.334000e-01   p_joint 4.733000e-01

Outputting figure to mutsig2_images.part000000000038/CHST4.2_1165_10000_0.1362_0.7334_0.4733.png
                gene_name: CHST4
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 77 percent done.
CHSY1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.239042e-02	ci left: 7.454356e-01	ci right 7.624162e-01	k: 7540	n:10000
Cons ci ratio: 3.556785e-02	ci left: 5.385833e-01	ci right 5.581885e-01	k: 5484	n:10000
KS ci ratio: 2.960819e-02	ci left: 6.271848e-01	ci right 6.461355e-01	k: 6367	n:10000
CHSY1   10000 perm   2 sec   (5754 perm/sec)   p_kst 6.367000e-01   p_cons 5.484000e-01   p_joint 7.540000e-01

Outputting figure to mutsig2_images.part000000000038/CHSY1.2_2421_10000_0.6367_0.5484_0.754.png
                gene_name: CHSY1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.76 

Current progress: 79 percent done.
CHUK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.852876e-02	ci left: 8.096859e-01	ci right 8.249288e-01	k: 8174	n:10000
Cons ci ratio: 2.679039e-02	ci left: 6.723675e-01	ci right 6.907266e-01	k: 6816	n:10000
KS ci ratio: 2.475385e-02	ci left: 7.059398e-01	ci right 7.237349e-01	k: 7149	n:10000
CHUK   10000 perm   2 sec   (5710 perm/sec)   p_kst 7.149000e-01   p_cons 6.816000e-01   p_joint 8.174000e-01

Outputting figure to mutsig2_images.part000000000038/CHUK.2_2322_10000_0.7149_0.6816_0.8174.png
                gene_name: CHUK
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 81 percent done.
CIB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.236279e-03	ci left: 9.536741e-01	ci right 9.616565e-01	k: 9578	n:10000
Cons ci ratio: 2.249902e-02	ci left: 7.436154e-01	ci right 7.606374e-01	k: 7522	n:10000
KS ci ratio: 1.679726e-02	ci left: 8.376546e-01	ci right 8.519439e-01	k: 8449	n:10000
CIB2   10000 perm   1 sec   (6853 perm/sec)   p_kst 8.449000e-01   p_cons 7.522000e-01   p_joint 9.578000e-01

Outputting figure to mutsig2_images.part000000000038/CIB2.2_588_10000_0.8449_0.7522_0.9578.png
                gene_name: CIB2
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 83 percent done.
CIRBP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.968114e-02	ci left: 3.740545e-01	ci right 3.932134e-01	k: 3836	n:10000
KS ci ratio: 1.857837e-02	ci left: 8.088732e-01	ci right 8.241419e-01	k: 8166	n:10000
CIRBP   10000 perm   1 sec   (7049 perm/sec)   p_kst 8.166000e-01   p_cons 3.836000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000038/CIRBP.2_543_10000_0.8166_0.3836_1.png
                gene_name: CIRBP
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 85 percent done.
CIZ1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.372124e-02	ci left: 8.846253e-01	ci right 8.969460e-01	k: 8909	n:10000
Cons ci ratio: 1.144619e-02	ci left: 9.160549e-01	ci right 9.266981e-01	k: 9215	n:10000
KS ci ratio: 2.013206e-02	ci left: 7.832008e-01	ci right 7.992292e-01	k: 7913	n:10000
CIZ1   10000 perm   2 sec   (5597 perm/sec)   p_kst 7.913000e-01   p_cons 9.215000e-01   p_joint 8.909000e-01

Outputting figure to mutsig2_images.part000000000038/CIZ1.2_2761_10000_0.7913_0.9215_0.8909.png
                gene_name: CIZ1
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.90 

Current progress: 88 percent done.
CKM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.389664e-01	ci left: 6.855690e-02	ci right 7.889307e-02	k: 736	n:10000
Cons ci ratio: 7.707555e-02	ci left: 1.975185e-01	ci right 2.134534e-01	k: 2054	n:10000
KS ci ratio: 1.486677e-01	ci left: 6.014890e-02	ci right 6.990637e-02	k: 649	n:10000
CKM   10000 perm   2 sec   (6563 perm/sec)   p_kst 6.490000e-02   p_cons 2.054000e-01   p_joint 7.360000e-02

Joint ci ratio: 1.498089e-01	ci left: 3.061553e-02	ci right 3.562141e-02	k: 661	n:20000
Cons ci ratio: 5.532413e-02	ci left: 1.950690e-01	ci right 2.062182e-01	k: 4012	n:20000
KS ci ratio: 1.032693e-01	ci left: 6.371945e-02	ci right 7.070702e-02	k: 1343	n:20000
CKM   20000 perm   4 sec   (5693 perm/sec)   p_kst 6.715000e-02   p_cons 2.006000e-01   p_joint 3.305000e-02

Joint ci ratio: 7.822813e-02	ci left: 7.420408e-02	ci right 8.027809e-02	k: 2316	n:30000
Cons ci ratio: 4.515104e-02	ci left: 1.962463e-01	ci right 2.053450e-01	k: 6023	n:30000
KS ci ratio: 8.414083e-02	ci left: 6.462097e-02	ci right 7.032981e-02	k: 2023	n:30000
CKM   30000 perm   6 sec   (5339 perm/sec)   p_kst 6.743333e-02   p_cons 2.007667e-01   p_joint 7.720000e-02

Outputting figure to mutsig2_images.part000000000038/CKM.2_1174_30000_0.067433_0.20077_0.0772.png
                gene_name: CKM
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.067 
        ci_ks_bounds_left: 0.065 
       ci_ks_bounds_right: 0.070 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.077 
     ci_joint_bounds_left: 0.074 
    ci_joint_bounds_right: 0.080 

Current progress: 90 percent done.
CLCA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.573248e-02	ci left: 2.032352e-01	ci right 2.193333e-01	k: 2112	n:10000
Cons ci ratio: 1.233669e-01	ci left: 8.601581e-02	ci right 9.742332e-02	k: 916	n:10000
KS ci ratio: 2.088549e-02	ci left: 7.706358e-01	ci right 7.870015e-01	k: 7789	n:10000
CLCA4   10000 perm   2 sec   (5635 perm/sec)   p_kst 7.789000e-01   p_cons 9.160000e-02   p_joint 2.112000e-01

Joint ci ratio: 1.544835e-02	ci left: 7.570436e-01	ci right 7.688799e-01	k: 15260	n:20000
Cons ci ratio: 8.736650e-02	ci left: 8.744074e-02	ci right 9.547849e-02	k: 1828	n:20000
KS ci ratio: 1.454721e-02	ci left: 7.782812e-01	ci right 7.897361e-01	k: 15681	n:20000
CLCA4   20000 perm   4 sec   (4979 perm/sec)   p_kst 7.840500e-01   p_cons 9.140000e-02   p_joint 7.630000e-01

Outputting figure to mutsig2_images.part000000000038/CLCA4.2_2816_20000_0.78405_0.0914_0.763.png
                gene_name: CLCA4
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.091 
      ci_cons_bounds_left: 0.087 
     ci_cons_bounds_right: 0.095 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 92 percent done.
CLCN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.700814e-02	ci left: 8.342946e-01	ci right 8.487059e-01	k: 8416	n:10000
Cons ci ratio: 4.555035e-02	ci left: 4.156828e-01	ci right 4.351607e-01	k: 4254	n:10000
KS ci ratio: 1.786148e-02	ci left: 8.205599e-01	ci right 8.354485e-01	k: 8281	n:10000
CLCN4   10000 perm   2 sec   (5712 perm/sec)   p_kst 8.281000e-01   p_cons 4.254000e-01   p_joint 8.416000e-01

Outputting figure to mutsig2_images.part000000000038/CLCN4.2_2327_10000_0.8281_0.4254_0.8416.png
                gene_name: CLCN4
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 94 percent done.
CLCN6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.814236e-02	ci left: 5.037510e-01	ci right 5.234410e-01	k: 5136	n:10000
KS ci ratio: 8.447514e-03	ci left: 9.514824e-01	ci right 9.596496e-01	k: 9557	n:10000
CLCN6   10000 perm   2 sec   (5702 perm/sec)   p_kst 9.557000e-01   p_cons 5.136000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000038/CLCN6.2_2712_10000_0.9557_0.5136_1.png
                gene_name: CLCN6
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
CLCNKB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.007379e-01	ci left: 1.248365e-01	ci right 1.381789e-01	k: 1314	n:10000
Cons ci ratio: 1.108203e-01	ci left: 1.050046e-01	ci right 1.174229e-01	k: 1111	n:10000
KS ci ratio: 6.256426e-02	ci left: 2.729972e-01	ci right 2.907301e-01	k: 2818	n:10000
CLCNKB   10000 perm   2 sec   (5917 perm/sec)   p_kst 2.818000e-01   p_cons 1.111000e-01   p_joint 1.314000e-01

Joint ci ratio: 8.744546e-02	ci left: 8.729371e-02	ci right 9.532556e-02	k: 1825	n:20000
Cons ci ratio: 7.360460e-02	ci left: 1.196098e-01	ci right 1.287997e-01	k: 2483	n:20000
KS ci ratio: 4.484298e-02	ci left: 2.702099e-01	ci right 2.826552e-01	k: 5528	n:20000
CLCNKB   20000 perm   4 sec   (5204 perm/sec)   p_kst 2.764000e-01   p_cons 1.241500e-01   p_joint 9.125000e-02

Outputting figure to mutsig2_images.part000000000038/CLCNKB.2_2288_20000_0.2764_0.12415_0.09125.png
                gene_name: CLCNKB
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.091 
     ci_joint_bounds_left: 0.087 
    ci_joint_bounds_right: 0.095 

Current progress: 98 percent done.
CLDN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.396524e-02	ci left: 3.359772e-01	ci right 3.547130e-01	k: 3453	n:10000
Cons ci ratio: 1.291907e-01	ci left: 7.882909e-02	ci right 8.981448e-02	k: 842	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
CLDN1   10000 perm   1 sec   (7029 perm/sec)   p_kst 1   p_cons 8.420000e-02   p_joint 3.453000e-01

Joint ci ratio: 2.056525e-02	ci left: 6.382724e-01	ci right 6.515855e-01	k: 12899	n:20000
Cons ci ratio: 9.100027e-02	ci left: 8.102361e-02	ci right 8.879757e-02	k: 1697	n:20000
KS ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
CLDN1   20000 perm   3 sec   (6093 perm/sec)   p_kst 1   p_cons 8.485000e-02   p_joint 6.449500e-01

Outputting figure to mutsig2_images.part000000000038/CLDN1.2_652_20000_1_0.08485_0.64495.png
                gene_name: CLDN1
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.085 
      ci_cons_bounds_left: 0.081 
     ci_cons_bounds_right: 0.089 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.65 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000038
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 38 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1529>
Subject: Job 8003965: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1529>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000039> was used as the working directory.
Started at Sun Nov 11 15:04:50 2012
Results reported at Sun Nov 11 15:35:10 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000039.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000039.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 39  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000039.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   2116.05 sec.
    Max Memory :      4745 MB
    Max Swap   :      7121 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
39
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 39
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 39: processing genes 3439 - 3528
Calculating significance of each gene.
Using projection method.
3439	CLDN19	3.585980e-01
3440	CLDN2	5.401060e-01
3441	CLDN20	1
3442	CLDN22	3.225852e-01
3443	CLDN25	1.231520e-02
3444	CLDN3	4.112785e-01
3445	CLDN4	6.430147e-01
3446	CLDN5	5.993747e-01
3447	CLDN6	2.408386e-01
3448	CLDN7	1
3449	CLDN8	4.881811e-01
3450	CLDN9	6.728658e-02
3451	CLDND1	2.113055e-01
3452	CLDND2	1
3453	CLEC10A	1
3454	CLEC11A	2.320466e-01
3455	CLEC12A	8.627245e-02
3456	CLEC12B	1
3457	CLEC14A	7.246270e-01
3458	CLEC16A	1
3459	CLEC17A	1.659655e-01
3460	CLEC18A	1
3461	CLEC18B	4.064488e-01
3462	CLEC18C	1
3463	CLEC1A	2.256912e-01
3464	CLEC1B	8.007540e-02
3465	CLEC2B	1
3466	CLEC2D	6.089229e-01
3467	CLEC2L	1
3468	CLEC3A	7.699479e-04
3469	CLEC3B	1.850114e-01
3470	CLEC4A	1
3471	CLEC4C	2.123183e-03
3472	CLEC4D	2.409331e-01
3473	CLEC4E	2.135066e-01
3474	CLEC4F	1
3475	CLEC4G	3.867275e-01
3476	CLEC4M	1
3477	CLEC5A	4.350137e-01
3478	CLEC6A	3.584179e-01
3479	CLEC7A	1
3480	CLEC9A	2.271779e-02
3481	CLECL1	1
3482	CLGN	5.143355e-01
3483	CLIC1	1
3484	CLIC2	1
3485	CLIC3	1
3486	CLIC4	5.360706e-01
3487	CLIC5	5.812898e-01
3488	CLIC6	1
3489	CLINT1	8.391196e-01
3490	CLIP1	9.417369e-01
3491	CLIP2	9.677038e-01
3492	CLIP3	9.066058e-01
3493	CLIP4	7.190124e-01
3494	CLK1	2.121247e-01
3495	CLK2	6.000771e-01
3496	CLK3	9.025056e-01
3497	CLK4	6.390045e-01
3498	CLLU1	1
3499	CLLU1OS	1.400397e-03
3500	CLMN	1.382052e-01
3501	CLN3	2.138974e-01
3502	CLN5	2.176027e-01
3503	CLN6	1
3504	CLN8	1
3505	CLNK	5.720846e-01
3506	CLNS1A	1
3507	CLOCK	3.862560e-01
3508	CLP1	6.338227e-01
3509	CLPB	7.245684e-01
3510	CLPP	1
3511	CLPS	1
3512	CLPTM1	4.901825e-01
3513	CLPTM1L	6.403397e-01
3514	CLPX	1
3515	CLRN1	2.031823e-02
3516	CLRN2	9.168303e-04
3517	CLRN3	5.551120e-01
3518	CLSPN	5.116920e-01
3519	CLSTN1	9.603148e-01
3520	CLSTN2	2.467224e-05
3521	CLSTN3	8.043413e-01
3522	CLTA	3.504673e-01
3523	CLTB	1
3524	CLTC	9.927745e-01
3525	CLTCL1	1
3526	CLU	7.778649e-01
3527	CLUAP1	1
3528	CLUL1	1
Done

Running MutSig 2:
Scatter job 39: processing genes 3439 - 3528
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CLSTN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.830905e-02	ci left: 1.572823e-01	ci right 1.719136e-01	k: 1645	n:10000
Cons ci ratio: 1.791228e-01	ci left: 4.159407e-02	ci right 4.987317e-02	k: 456	n:10000
KS ci ratio: 1.691241e-02	ci left: 8.358217e-01	ci right 8.501778e-01	k: 8431	n:10000
CLSTN2   10000 perm   3 sec   (3722 perm/sec)   p_kst 8.431000e-01   p_cons 4.560000e-02   p_joint 1.645000e-01

Joint ci ratio: 6.425284e-02	ci left: 1.518352e-01	ci right 1.619648e-01	k: 3137	n:20000
Cons ci ratio: 1.267345e-01	ci left: 4.275002e-02	ci right 4.858299e-02	k: 912	n:20000
KS ci ratio: 1.197178e-02	ci left: 8.376807e-01	ci right 8.478194e-01	k: 16856	n:20000
CLSTN2   20000 perm   9 sec   (2231 perm/sec)   p_kst 8.428000e-01   p_cons 4.560000e-02   p_joint 1.568500e-01

Joint ci ratio: 3.841436e-02	ci left: 2.526915e-01	ci right 2.626221e-01	k: 7729	n:30000
Cons ci ratio: 1.108726e-01	ci left: 3.777809e-02	ci right 4.224489e-02	k: 1199	n:30000
KS ci ratio: 9.822643e-03	ci left: 8.373176e-01	ci right 8.456161e-01	k: 25245	n:30000
CLSTN2   30000 perm   12 sec   (2471 perm/sec)   p_kst 8.415000e-01   p_cons 3.996667e-02   p_joint 2.576333e-01

Joint ci ratio: 3.490221e-02	ci left: 2.355478e-01	ci right 2.439400e-01	k: 9589	n:40000
Cons ci ratio: 9.680945e-02	ci left: 3.746566e-02	ci right 4.130158e-02	k: 1574	n:40000
KS ci ratio: 8.471483e-03	ci left: 8.389938e-01	ci right 8.461564e-01	k: 33704	n:40000
CLSTN2   40000 perm   15 sec   (2602 perm/sec)   p_kst 8.426000e-01   p_cons 3.935000e-02   p_joint 2.397250e-01

Outputting figure to mutsig2_images.part000000000039/CLSTN2.17_2936_40000_0.8426_0.03935_0.23972.png
                gene_name: CLSTN2
               theta_stop: 0.097 
                    nperm: 40000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.039 
      ci_cons_bounds_left: 0.037 
     ci_cons_bounds_right: 0.041 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.24 

Current progress: 2 percent done.
CLMN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.371833e-02	ci left: 7.232022e-01	ci right 7.406625e-01	k: 7320	n:10000
Cons ci ratio: 3.246516e-02	ci left: 5.833956e-01	ci right 6.027502e-01	k: 5931	n:10000
KS ci ratio: 3.496175e-02	ci left: 5.470984e-01	ci right 5.666684e-01	k: 5569	n:10000
CLMN   10000 perm   2 sec   (4839 perm/sec)   p_kst 5.569000e-01   p_cons 5.931000e-01   p_joint 7.320000e-01

Outputting figure to mutsig2_images.part000000000039/CLMN.9_3061_10000_0.5569_0.5931_0.732.png
                gene_name: CLMN
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 5 percent done.
CLRN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.842576e-02	ci left: 5.000504e-01	ci right 5.197438e-01	k: 5099	n:10000
Cons ci ratio: 3.944572e-02	ci left: 4.869525e-01	ci right 5.066494e-01	k: 4968	n:10000
KS ci ratio: 4.418895e-02	ci left: 4.305389e-01	ci right 4.500959e-01	k: 4403	n:10000
CLRN2   10000 perm   2 sec   (6240 perm/sec)   p_kst 4.403000e-01   p_cons 4.968000e-01   p_joint 5.099000e-01

Outputting figure to mutsig2_images.part000000000039/CLRN2.6_711_10000_0.4403_0.4968_0.5099.png
                gene_name: CLRN2
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 7 percent done.
CLSPN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.178682e-02	ci left: 7.555514e-01	ci right 7.722946e-01	k: 7640	n:10000
Cons ci ratio: 1.550859e-02	ci left: 8.578398e-01	ci right 8.713470e-01	k: 8647	n:10000
KS ci ratio: 4.226054e-02	ci left: 4.525901e-01	ci right 4.722318e-01	k: 4624	n:10000
CLSPN   10000 perm   2 sec   (4471 perm/sec)   p_kst 4.624000e-01   p_cons 8.647000e-01   p_joint 7.640000e-01

Outputting figure to mutsig2_images.part000000000039/CLSPN.6_4120_10000_0.4624_0.8647_0.764.png
                gene_name: CLSPN
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 10 percent done.
CLTC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.320754e-02	ci left: 4.416119e-01	ci right 4.612164e-01	k: 4514	n:10000
Cons ci ratio: 2.978760e-02	ci left: 6.243702e-01	ci right 6.433517e-01	k: 6339	n:10000
KS ci ratio: 5.667384e-02	ci left: 3.143335e-01	ci right 3.327693e-01	k: 3235	n:10000
CLTC   10000 perm   2 sec   (4206 perm/sec)   p_kst 3.235000e-01   p_cons 6.339000e-01   p_joint 4.514000e-01

Outputting figure to mutsig2_images.part000000000039/CLTC.6_5156_10000_0.3235_0.6339_0.4514.png
                gene_name: CLTC
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 12 percent done.
CLEC3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.729637e-02	ci left: 5.149562e-01	ci right 5.346293e-01	k: 5248	n:10000
Cons ci ratio: 7.719376e-02	ci left: 1.970258e-01	ci right 2.129464e-01	k: 2049	n:10000
KS ci ratio: 1.437565e-02	ci left: 8.750041e-01	ci right 8.877728e-01	k: 8815	n:10000
CLEC3A   10000 perm   2 sec   (6202 perm/sec)   p_kst 8.815000e-01   p_cons 2.049000e-01   p_joint 5.248000e-01

Outputting figure to mutsig2_images.part000000000039/CLEC3A.5_606_10000_0.8815_0.2049_0.5248.png
                gene_name: CLEC3A
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 14 percent done.
CLEC4C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.818666e-02	ci left: 8.152741e-01	ci right 8.303374e-01	k: 8229	n:10000
KS ci ratio: 3.015439e-02	ci left: 6.186415e-01	ci right 6.376837e-01	k: 6282	n:10000
CLEC4C   10000 perm   2 sec   (6330 perm/sec)   p_kst 6.282000e-01   p_cons 8.229000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000039/CLEC4C.5_666_10000_0.6282_0.8229_1.png
                gene_name: CLEC4C
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 17 percent done.
CLOCK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.162590e-02	ci left: 1.796951e-01	ci right 1.950875e-01	k: 1873	n:10000
Cons ci ratio: 4.098259e-02	ci left: 4.678676e-01	ci right 4.875454e-01	k: 4777	n:10000
KS ci ratio: 1.244911e-01	ci left: 8.455810e-02	ci right 9.588194e-02	k: 901	n:10000
CLOCK   10000 perm   2 sec   (4975 perm/sec)   p_kst 9.010000e-02   p_cons 4.777000e-01   p_joint 1.873000e-01

Joint ci ratio: 7.596290e-02	ci left: 1.130188e-01	ci right 1.219927e-01	k: 2349	n:20000
Cons ci ratio: 2.895815e-02	ci left: 4.711557e-01	ci right 4.850506e-01	k: 9562	n:20000
KS ci ratio: 8.829953e-02	ci left: 8.572561e-02	ci right 9.369414e-02	k: 1793	n:20000
CLOCK   20000 perm   4 sec   (4446 perm/sec)   p_kst 8.965000e-02   p_cons 4.781000e-01   p_joint 1.174500e-01

Outputting figure to mutsig2_images.part000000000039/CLOCK.5_2621_20000_0.08965_0.4781_0.11745.png
                gene_name: CLOCK
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.090 
        ci_ks_bounds_left: 0.086 
       ci_ks_bounds_right: 0.094 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 19 percent done.
CLDN25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.211635e-02	ci left: 4.542871e-01	ci right 4.739338e-01	k: 4641	n:10000
KS ci ratio: 1.458799e-02	ci left: 8.718340e-01	ci right 8.847448e-01	k: 8784	n:10000
CLDN25   10000 perm   2 sec   (6372 perm/sec)   p_kst 8.784000e-01   p_cons 4.641000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000039/CLDN25.4_694_10000_0.8784_0.4641_1.png
                gene_name: CLDN25
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 21 percent done.
CLEC9A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.221246e-01	ci left: 8.766844e-02	ci right 9.916968e-02	k: 933	n:10000
Cons ci ratio: 1.042826e-01	ci left: 1.173073e-01	ci right 1.303127e-01	k: 1237	n:10000
KS ci ratio: 8.502186e-02	ci left: 1.677948e-01	ci right 1.827948e-01	k: 1752	n:10000
CLEC9A   10000 perm   1 sec   (6695 perm/sec)   p_kst 1.752000e-01   p_cons 1.237000e-01   p_joint 9.330000e-02

Joint ci ratio: 9.751825e-02	ci left: 7.109338e-02	ci right 7.843082e-02	k: 1494	n:20000
Cons ci ratio: 7.731122e-02	ci left: 1.094793e-01	ci right 1.183333e-01	k: 2277	n:20000
KS ci ratio: 5.927148e-02	ci left: 1.741044e-01	ci right 1.847890e-01	k: 3588	n:20000
CLEC9A   20000 perm   3 sec   (5755 perm/sec)   p_kst 1.794000e-01   p_cons 1.138500e-01   p_joint 7.470000e-02

Outputting figure to mutsig2_images.part000000000039/CLEC9A.4_750_20000_0.1794_0.11385_0.0747.png
                gene_name: CLEC9A
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.075 
     ci_joint_bounds_left: 0.071 
    ci_joint_bounds_right: 0.078 

Current progress: 24 percent done.
CLLU1OS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.998681e-02	ci left: 6.212544e-01	ci right 6.402693e-01	k: 6308	n:10000
Cons ci ratio: 2.935274e-02	ci left: 6.312063e-01	ci right 6.501117e-01	k: 6407	n:10000
KS ci ratio: 7.577795e-02	ci left: 2.030380e-01	ci right 2.191306e-01	k: 2110	n:10000
CLLU1OS   10000 perm   2 sec   (6589 perm/sec)   p_kst 2.110000e-01   p_cons 6.407000e-01   p_joint 6.308000e-01

Outputting figure to mutsig2_images.part000000000039/CLLU1OS.4_318_10000_0.211_0.6407_0.6308.png
                gene_name: CLLU1OS
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 26 percent done.
CLRN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.270415e-02	ci left: 7.401779e-01	ci right 7.572770e-01	k: 7488	n:10000
Cons ci ratio: 5.960880e-02	ci left: 2.928118e-01	ci right 3.109038e-01	k: 3018	n:10000
KS ci ratio: 1.818666e-02	ci left: 8.152741e-01	ci right 8.303374e-01	k: 8229	n:10000
CLRN1   10000 perm   2 sec   (6328 perm/sec)   p_kst 8.229000e-01   p_cons 3.018000e-01   p_joint 7.488000e-01

Outputting figure to mutsig2_images.part000000000039/CLRN1.4_765_10000_0.8229_0.3018_0.7488.png
                gene_name: CLRN1
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 29 percent done.
CLDN9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.379086e-02	ci left: 7.219903e-01	ci right 7.394751e-01	k: 7308	n:10000
Cons ci ratio: 5.110775e-02	ci left: 3.608245e-01	ci right 3.798511e-01	k: 3703	n:10000
KS ci ratio: 2.035729e-02	ci left: 7.794504e-01	ci right 7.955817e-01	k: 7876	n:10000
CLDN9   10000 perm   1 sec   (6809 perm/sec)   p_kst 7.876000e-01   p_cons 3.703000e-01   p_joint 7.308000e-01

Outputting figure to mutsig2_images.part000000000039/CLDN9.3_658_10000_0.7876_0.3703_0.7308.png
                gene_name: CLDN9
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 31 percent done.
CLEC12A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.531823e-02	ci left: 4.181748e-01	ci right 4.376672e-01	k: 4279	n:10000
KS ci ratio: 2.599742e-02	ci left: 6.853663e-01	ci right 7.035203e-01	k: 6945	n:10000
CLEC12A   10000 perm   2 sec   (6439 perm/sec)   p_kst 6.945000e-01   p_cons 4.279000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000039/CLEC12A.3_822_10000_0.6945_0.4279_1.png
                gene_name: CLEC12A
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 33 percent done.
CLEC14A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.903404e-02	ci left: 2.968763e-01	ci right 3.150368e-01	k: 3059	n:10000
Cons ci ratio: 2.486315e-02	ci left: 7.041236e-01	ci right 7.219521e-01	k: 7131	n:10000
KS ci ratio: 9.141929e-02	ci left: 1.481542e-01	ci right 1.624472e-01	k: 1552	n:10000
CLEC14A   10000 perm   2 sec   (6000 perm/sec)   p_kst 1.552000e-01   p_cons 7.131000e-01   p_joint 3.059000e-01

Outputting figure to mutsig2_images.part000000000039/CLEC14A.3_1477_10000_0.1552_0.7131_0.3059.png
                gene_name: CLEC14A
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 36 percent done.
CLEC18B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.088077e-01	ci left: 4.407042e-03	ci right 7.491475e-03	k: 58	n:10000
Cons ci ratio: 5.177092e-01	ci left: 4.232871e-03	ci right 7.265981e-03	k: 56	n:10000
KS ci ratio: 5.271225e-02	ci left: 3.466085e-01	ci right 3.654755e-01	k: 3560	n:10000
CLEC18B   10000 perm   2 sec   (5976 perm/sec)   p_kst 3.560000e-01   p_cons 5.600000e-03   p_joint 5.800000e-03

Joint ci ratio: 5.052976e-01	ci left: 2.246412e-03	ci right 3.803657e-03	k: 59	n:20000
Cons ci ratio: 3.797244e-01	ci left: 4.295928e-03	ci right 6.351929e-03	k: 105	n:20000
KS ci ratio: 3.705467e-02	ci left: 3.520987e-01	ci right 3.654424e-01	k: 7175	n:20000
CLEC18B   20000 perm   4 sec   (5284 perm/sec)   p_kst 3.587500e-01   p_cons 5.250000e-03   p_joint 2.950000e-03

Joint ci ratio: 2.971666e-01	ci left: 4.910451e-03	ci right 6.654022e-03	k: 172	n:30000
Cons ci ratio: 3.214209e-01	ci left: 4.141425e-03	ci right 5.756742e-03	k: 147	n:30000
KS ci ratio: 3.007392e-02	ci left: 3.560936e-01	ci right 3.669998e-01	k: 10846	n:30000
CLEC18B   30000 perm   6 sec   (5017 perm/sec)   p_kst 3.615333e-01   p_cons 4.900000e-03   p_joint 5.733333e-03

Joint ci ratio: 2.710921e-01	ci left: 4.495471e-03	ci right 5.927807e-03	k: 207	n:40000
Cons ci ratio: 2.852192e-01	ci left: 4.030184e-03	ci right 5.393254e-03	k: 187	n:40000
KS ci ratio: 2.605275e-02	ci left: 3.566898e-01	ci right 3.661303e-01	k: 14456	n:40000
CLEC18B   40000 perm   8 sec   (4835 perm/sec)   p_kst 3.614000e-01   p_cons 4.675000e-03   p_joint 5.175000e-03

Joint ci ratio: 2.180875e-01	ci left: 5.719809e-03	ci right 7.138410e-03	k: 320	n:50000
Cons ci ratio: 2.607421e-01	ci left: 3.913558e-03	ci right 5.105096e-03	k: 224	n:50000
KS ci ratio: 2.328437e-02	ci left: 3.575463e-01	ci right 3.659897e-01	k: 18088	n:50000
CLEC18B   50000 perm   11 sec   (4703 perm/sec)   p_kst 3.617600e-01   p_cons 4.480000e-03   p_joint 6.400000e-03

Joint ci ratio: 2.023364e-01	ci left: 5.587563e-03	ci right 6.860909e-03	k: 372	n:60000
Cons ci ratio: 2.316467e-01	ci left: 4.199876e-03	ci right 5.315526e-03	k: 284	n:60000
KS ci ratio: 2.125547e-02	ci left: 3.579203e-01	ci right 3.656264e-01	k: 21706	n:60000
CLEC18B   60000 perm   13 sec   (4587 perm/sec)   p_kst 3.617667e-01   p_cons 4.733333e-03   p_joint 6.200000e-03

Joint ci ratio: 1.964280e-01	ci left: 5.101380e-03	ci right 6.225907e-03	k: 395	n:70000
Cons ci ratio: 2.149511e-01	ci left: 4.220328e-03	ci right 5.249959e-03	k: 330	n:70000
KS ci ratio: 1.969569e-02	ci left: 3.578113e-01	ci right 3.649430e-01	k: 25296	n:70000
CLEC18B   70000 perm   16 sec   (4474 perm/sec)   p_kst 3.613714e-01   p_cons 4.714286e-03   p_joint 5.642857e-03

Joint ci ratio: 1.903175e-01	ci left: 4.772896e-03	ci right 5.788489e-03	k: 421	n:80000
Cons ci ratio: 2.047123e-01	ci left: 4.095436e-03	ci right 5.041046e-03	k: 364	n:80000
KS ci ratio: 1.842206e-02	ci left: 3.580823e-01	ci right 3.647527e-01	k: 28913	n:80000
CLEC18B   80000 perm   18 sec   (4372 perm/sec)   p_kst 3.614125e-01   p_cons 4.550000e-03   p_joint 5.262500e-03

Joint ci ratio: 1.619621e-01	ci left: 5.942734e-03	ci right 7.000565e-03	k: 581	n:90000
Cons ci ratio: 1.922128e-01	ci left: 4.157812e-03	ci right 5.052357e-03	k: 413	n:90000
KS ci ratio: 1.736943e-02	ci left: 3.582493e-01	ci right 3.645374e-01	k: 32525	n:90000
CLEC18B   90000 perm   21 sec   (4276 perm/sec)   p_kst 3.613889e-01   p_cons 4.588889e-03   p_joint 6.455556e-03

Joint ci ratio: 1.545758e-01	ci left: 5.895882e-03	ci right 6.893074e-03	k: 638	n:100000
Cons ci ratio: 1.796234e-01	ci left: 4.314163e-03	ci right 5.174950e-03	k: 473	n:100000
KS ci ratio: 1.644743e-02	ci left: 3.592700e-01	ci right 3.652380e-01	k: 36225	n:100000
CLEC18B   100000 perm   24 sec   (4195 perm/sec)   p_kst 3.622500e-01   p_cons 4.730000e-03   p_joint 6.380000e-03

Joint ci ratio: 1.812046e-01	ci left: 3.852439e-03	ci right 4.628603e-03	k: 465	n:110000
Cons ci ratio: 1.991715e-01	ci left: 3.159602e-03	ci right 3.866974e-03	k: 385	n:110000
KS ci ratio: 1.563387e-02	ci left: 3.608290e-01	ci right 3.665236e-01	k: 40004	n:110000
CLEC18B   110000 perm   27 sec   (4115 perm/sec)   p_kst 3.636727e-01   p_cons 3.500000e-03   p_joint 4.227273e-03

Joint ci ratio: 1.767249e-01	ci left: 3.722421e-03	ci right 4.451866e-03	k: 489	n:120000
Cons ci ratio: 1.902599e-01	ci left: 3.189614e-03	ci right 3.868061e-03	k: 422	n:120000
KS ci ratio: 1.496446e-02	ci left: 3.610688e-01	ci right 3.665211e-01	k: 43655	n:120000
CLEC18B   120000 perm   30 sec   (4036 perm/sec)   p_kst 3.637917e-01   p_cons 3.516667e-03   p_joint 4.075000e-03

Joint ci ratio: 1.667948e-01	ci left: 3.877818e-03	ci right 4.590730e-03	k: 549	n:130000
Cons ci ratio: 1.846758e-01	ci left: 3.134865e-03	ci right 3.779904e-03	k: 448	n:130000
KS ci ratio: 1.435305e-02	ci left: 3.619597e-01	ci right 3.672002e-01	k: 47395	n:130000
CLEC18B   130000 perm   33 sec   (3963 perm/sec)   p_kst 3.645769e-01   p_cons 3.446154e-03   p_joint 4.223077e-03

Joint ci ratio: 1.788021e-01	ci left: 3.115482e-03	ci right 3.733938e-03	k: 478	n:140000
Cons ci ratio: 1.765960e-01	ci left: 3.197396e-03	ci right 3.823445e-03	k: 490	n:140000
KS ci ratio: 1.383646e-02	ci left: 3.618712e-01	ci right 3.669202e-01	k: 51015	n:140000
CLEC18B   140000 perm   36 sec   (3899 perm/sec)   p_kst 3.643929e-01   p_cons 3.500000e-03   p_joint 3.414286e-03

Joint ci ratio: 1.512171e-01	ci left: 4.122650e-03	ci right 4.803389e-03	k: 668	n:150000
Cons ci ratio: 1.717704e-01	ci left: 3.162760e-03	ci right 3.763352e-03	k: 518	n:150000
KS ci ratio: 1.337114e-02	ci left: 3.618240e-01	ci right 3.667012e-01	k: 54639	n:150000
CLEC18B   150000 perm   39 sec   (3833 perm/sec)   p_kst 3.642600e-01   p_cons 3.453333e-03   p_joint 4.453333e-03

Joint ci ratio: 1.463742e-01	ci left: 4.135767e-03	ci right 4.794888e-03	k: 713	n:160000
Cons ci ratio: 1.655079e-01	ci left: 3.204544e-03	ci right 3.788675e-03	k: 558	n:160000
KS ci ratio: 1.293131e-02	ci left: 3.624469e-01	ci right 3.671705e-01	k: 58369	n:160000
CLEC18B   160000 perm   42 sec   (3773 perm/sec)   p_kst 3.648062e-01   p_cons 3.487500e-03   p_joint 4.456250e-03

Joint ci ratio: 1.515986e-01	ci left: 3.620582e-03	ci right 4.220060e-03	k: 665	n:170000
Cons ci ratio: 1.616539e-01	ci left: 3.168359e-03	ci right 3.731138e-03	k: 585	n:170000
KS ci ratio: 1.255001e-02	ci left: 3.623408e-01	ci right 3.669227e-01	k: 61987	n:170000
CLEC18B   170000 perm   46 sec   (3712 perm/sec)   p_kst 3.646294e-01   p_cons 3.441176e-03   p_joint 3.911765e-03

Joint ci ratio: 1.650964e-01	ci left: 2.864419e-03	ci right 3.385121e-03	k: 561	n:180000
Cons ci ratio: 1.565271e-01	ci left: 3.200385e-03	ci right 3.749132e-03	k: 624	n:180000
KS ci ratio: 1.219793e-02	ci left: 3.623481e-01	ci right 3.668007e-01	k: 65623	n:180000
CLEC18B   180000 perm   49 sec   (3655 perm/sec)   p_kst 3.645722e-01   p_cons 3.466667e-03   p_joint 3.116667e-03

Joint ci ratio: 1.621001e-01	ci left: 2.819656e-03	ci right 3.322011e-03	k: 582	n:190000
Cons ci ratio: 1.517444e-01	ci left: 3.234356e-03	ci right 3.770443e-03	k: 664	n:190000
KS ci ratio: 1.187013e-02	ci left: 3.625036e-01	ci right 3.668374e-01	k: 69287	n:190000
CLEC18B   190000 perm   53 sec   (3599 perm/sec)   p_kst 3.646684e-01   p_cons 3.494737e-03   p_joint 3.063158e-03

Joint ci ratio: 1.603296e-01	ci left: 2.741042e-03	ci right 3.223543e-03	k: 595	n:200000
Cons ci ratio: 1.476906e-01	ci left: 3.250710e-03	ci right 3.773843e-03	k: 701	n:200000
KS ci ratio: 1.156193e-02	ci left: 3.628646e-01	ci right 3.670893e-01	k: 72995	n:200000
CLEC18B   200000 perm   56 sec   (3544 perm/sec)   p_kst 3.649750e-01   p_cons 3.505000e-03   p_joint 2.975000e-03

Joint ci ratio: 1.353056e-01	ci left: 3.711518e-03	ci right 4.254695e-03	k: 835	n:210000
Cons ci ratio: 1.444364e-01	ci left: 3.242725e-03	ci right 3.752084e-03	k: 733	n:210000
KS ci ratio: 1.129672e-02	ci left: 3.623649e-01	ci right 3.664864e-01	k: 76529	n:210000
CLEC18B   210000 perm   60 sec   (3491 perm/sec)   p_kst 3.644238e-01   p_cons 3.490476e-03   p_joint 3.976190e-03

Joint ci ratio: 1.315038e-01	ci left: 3.758113e-03	ci right 4.291449e-03	k: 884	n:220000
Cons ci ratio: 1.412957e-01	ci left: 3.239967e-03	ci right 3.736893e-03	k: 766	n:220000
KS ci ratio: 1.103713e-02	ci left: 3.624067e-01	ci right 3.664333e-01	k: 80172	n:220000
CLEC18B   220000 perm   64 sec   (3440 perm/sec)   p_kst 3.644182e-01   p_cons 3.481818e-03   p_joint 4.018182e-03

Joint ci ratio: 1.289796e-01	ci left: 3.741931e-03	ci right 4.261996e-03	k: 919	n:230000
Cons ci ratio: 1.380056e-01	ci left: 3.254350e-03	ci right 3.740904e-03	k: 803	n:230000
KS ci ratio: 1.079769e-02	ci left: 3.623155e-01	ci right 3.662532e-01	k: 83785	n:230000
CLEC18B   230000 perm   68 sec   (3390 perm/sec)   p_kst 3.642826e-01   p_cons 3.491304e-03   p_joint 3.995652e-03

Joint ci ratio: 1.278788e-01	ci left: 3.650530e-03	ci right 4.153234e-03	k: 935	n:240000
Cons ci ratio: 1.343750e-01	ci left: 3.295844e-03	ci right 3.774603e-03	k: 847	n:240000
KS ci ratio: 1.056739e-02	ci left: 3.624866e-01	ci right 3.663416e-01	k: 87459	n:240000
CLEC18B   240000 perm   72 sec   (3342 perm/sec)   p_kst 3.644125e-01   p_cons 3.529167e-03   p_joint 3.895833e-03

Joint ci ratio: 1.413254e-01	ci left: 2.851130e-03	ci right 3.288516e-03	k: 766	n:250000
Cons ci ratio: 1.308695e-01	ci left: 3.341911e-03	ci right 3.813713e-03	k: 893	n:250000
KS ci ratio: 1.035408e-02	ci left: 3.625171e-01	ci right 3.662941e-01	k: 91101	n:250000
CLEC18B   250000 perm   76 sec   (3295 perm/sec)   p_kst 3.644040e-01   p_cons 3.572000e-03   p_joint 3.064000e-03

Joint ci ratio: 1.392550e-01	ci left: 2.826825e-03	ci right 3.253603e-03	k: 789	n:260000
Cons ci ratio: 1.287989e-01	ci left: 3.321289e-03	ci right 3.782194e-03	k: 922	n:260000
KS ci ratio: 1.015571e-02	ci left: 3.624306e-01	ci right 3.661339e-01	k: 94713	n:260000
CLEC18B   260000 perm   80 sec   (3250 perm/sec)   p_kst 3.642808e-01   p_cons 3.546154e-03   p_joint 3.034615e-03

Joint ci ratio: 1.371040e-01	ci left: 2.811518e-03	ci right 3.228892e-03	k: 814	n:270000
Cons ci ratio: 1.257673e-01	ci left: 3.359643e-03	ci right 3.814079e-03	k: 967	n:270000
KS ci ratio: 9.967692e-03	ci left: 3.623808e-01	ci right 3.660147e-01	k: 98333	n:270000
CLEC18B   270000 perm   84 sec   (3206 perm/sec)   p_kst 3.641963e-01   p_cons 3.581481e-03   p_joint 3.014815e-03

Joint ci ratio: 1.378770e-01	ci left: 2.680057e-03	ci right 3.080343e-03	k: 805	n:280000
Cons ci ratio: 1.245546e-01	ci left: 3.305382e-03	ci right 3.747849e-03	k: 986	n:280000
KS ci ratio: 9.787324e-03	ci left: 3.624494e-01	ci right 3.660177e-01	k: 101985	n:280000
CLEC18B   280000 perm   88 sec   (3165 perm/sec)   p_kst 3.642321e-01   p_cons 3.521429e-03   p_joint 2.875000e-03

Joint ci ratio: 1.178604e-01	ci left: 3.575969e-03	ci right 4.027140e-03	k: 1101	n:290000
Cons ci ratio: 1.221637e-01	ci left: 3.321738e-03	ci right 3.757242e-03	k: 1025	n:290000
KS ci ratio: 9.627944e-03	ci left: 3.619591e-01	ci right 3.654643e-01	k: 105476	n:290000
CLEC18B   290000 perm   93 sec   (3124 perm/sec)   p_kst 3.637103e-01   p_cons 3.534483e-03   p_joint 3.796552e-03

Joint ci ratio: 1.283423e-01	ci left: 2.900993e-03	ci right 3.302034e-03	k: 929	n:300000
Cons ci ratio: 1.203027e-01	ci left: 3.314445e-03	ci right 3.741901e-03	k: 1057	n:300000
KS ci ratio: 9.460744e-03	ci left: 3.622513e-01	ci right 3.656980e-01	k: 109192	n:300000
CLEC18B   300000 perm   97 sec   (3082 perm/sec)   p_kst 3.639733e-01   p_cons 3.523333e-03   p_joint 3.096667e-03

Joint ci ratio: 1.335630e-01	ci left: 2.585852e-03	ci right 2.959023e-03	k: 858	n:310000
Cons ci ratio: 1.183609e-01	ci left: 3.317060e-03	ci right 3.737466e-03	k: 1092	n:310000
KS ci ratio: 9.300210e-03	ci left: 3.626121e-01	ci right 3.660034e-01	k: 112935	n:310000
CLEC18B   310000 perm   102 sec   (3039 perm/sec)   p_kst 3.643065e-01   p_cons 3.522581e-03   p_joint 2.767742e-03

Joint ci ratio: 1.331035e-01	ci left: 2.523163e-03	ci right 2.885936e-03	k: 864	n:320000
Cons ci ratio: 1.169271e-01	ci left: 3.295292e-03	ci right 3.707530e-03	k: 1119	n:320000
KS ci ratio: 9.154118e-03	ci left: 3.626198e-01	ci right 3.659576e-01	k: 116572	n:320000
CLEC18B   320000 perm   107 sec   (3001 perm/sec)   p_kst 3.642875e-01   p_cons 3.496875e-03   p_joint 2.700000e-03

Joint ci ratio: 1.230959e-01	ci left: 2.875002e-03	ci right 3.255020e-03	k: 1010	n:330000
Cons ci ratio: 1.147933e-01	ci left: 3.319021e-03	ci right 3.726137e-03	k: 1161	n:330000
KS ci ratio: 9.013580e-03	ci left: 3.626850e-01	ci right 3.659719e-01	k: 120228	n:330000
CLEC18B   330000 perm   111 sec   (2960 perm/sec)   p_kst 3.643273e-01   p_cons 3.518182e-03   p_joint 3.060606e-03

Joint ci ratio: 1.203848e-01	ci left: 2.921622e-03	ci right 3.298691e-03	k: 1056	n:340000
Cons ci ratio: 1.134359e-01	ci left: 3.301404e-03	ci right 3.701250e-03	k: 1189	n:340000
KS ci ratio: 8.883326e-03	ci left: 3.625381e-01	ci right 3.657759e-01	k: 123813	n:340000
CLEC18B   340000 perm   116 sec   (2923 perm/sec)   p_kst 3.641559e-01   p_cons 3.497059e-03   p_joint 3.105882e-03

Joint ci ratio: 1.187122e-01	ci left: 2.921298e-03	ci right 3.292719e-03	k: 1086	n:350000
Cons ci ratio: 1.117122e-01	ci left: 3.309816e-03	ci right 3.704189e-03	k: 1226	n:350000
KS ci ratio: 8.753535e-03	ci left: 3.626654e-01	ci right 3.658568e-01	k: 127491	n:350000
CLEC18B   350000 perm   121 sec   (2889 perm/sec)   p_kst 3.642600e-01   p_cons 3.502857e-03   p_joint 3.102857e-03

Joint ci ratio: 1.170548e-01	ci left: 2.923723e-03	ci right 3.289903e-03	k: 1117	n:360000
Cons ci ratio: 1.100647e-01	ci left: 3.317805e-03	ci right 3.706921e-03	k: 1263	n:360000
KS ci ratio: 8.631497e-03	ci left: 3.626667e-01	ci right 3.658133e-01	k: 131126	n:360000
CLEC18B   360000 perm   126 sec   (2851 perm/sec)   p_kst 3.642389e-01   p_cons 3.508333e-03   p_joint 3.102778e-03

Joint ci ratio: 1.156671e-01	ci left: 2.915551e-03	ci right 3.276084e-03	k: 1144	n:370000
Cons ci ratio: 1.087821e-01	ci left: 3.306995e-03	ci right 3.690035e-03	k: 1293	n:370000
KS ci ratio: 8.514623e-03	ci left: 3.626573e-01	ci right 3.657610e-01	k: 134757	n:370000
CLEC18B   370000 perm   131 sec   (2817 perm/sec)   p_kst 3.642081e-01   p_cons 3.494595e-03   p_joint 3.091892e-03

Joint ci ratio: 1.200068e-01	ci left: 2.631926e-03	ci right 2.970463e-03	k: 1063	n:380000
Cons ci ratio: 1.073807e-01	ci left: 3.307024e-03	ci right 3.684820e-03	k: 1327	n:380000
KS ci ratio: 8.402659e-03	ci left: 3.626329e-01	ci right 3.656955e-01	k: 138382	n:380000
CLEC18B   380000 perm   137 sec   (2784 perm/sec)   p_kst 3.641632e-01   p_cons 3.492105e-03   p_joint 2.797368e-03

Joint ci ratio: 1.172794e-01	ci left: 2.688846e-03	ci right 3.026300e-03	k: 1113	n:390000
Cons ci ratio: 1.060321e-01	ci left: 3.307081e-03	ci right 3.679843e-03	k: 1361	n:390000
KS ci ratio: 8.289260e-03	ci left: 3.629303e-01	ci right 3.659538e-01	k: 142132	n:390000
CLEC18B   390000 perm   142 sec   (2751 perm/sec)   p_kst 3.644410e-01   p_cons 3.489744e-03   p_joint 2.853846e-03

Joint ci ratio: 1.089656e-01	ci left: 3.049221e-03	ci right 3.403036e-03	k: 1289	n:400000
Cons ci ratio: 1.048461e-01	ci left: 3.299860e-03	ci right 3.667391e-03	k: 1392	n:400000
KS ci ratio: 8.185670e-03	ci left: 3.629108e-01	ci right 3.658961e-01	k: 145761	n:400000
CLEC18B   400000 perm   147 sec   (2719 perm/sec)   p_kst 3.644025e-01   p_cons 3.480000e-03   p_joint 3.222500e-03

Joint ci ratio: 1.074351e-01	ci left: 3.062653e-03	ci right 3.412719e-03	k: 1326	n:410000
Cons ci ratio: 1.036626e-01	ci left: 3.295389e-03	ci right 3.658026e-03	k: 1424	n:410000
KS ci ratio: 8.088808e-03	ci left: 3.627244e-01	ci right 3.656727e-01	k: 149321	n:410000
CLEC18B   410000 perm   152 sec   (2689 perm/sec)   p_kst 3.641976e-01   p_cons 3.473171e-03   p_joint 3.234146e-03

Joint ci ratio: 1.052345e-01	ci left: 3.119524e-03	ci right 3.468336e-03	k: 1382	n:420000
Cons ci ratio: 1.023422e-01	ci left: 3.302753e-03	ci right 3.661293e-03	k: 1461	n:420000
KS ci ratio: 7.993740e-03	ci left: 3.626374e-01	ci right 3.655502e-01	k: 152919	n:420000
CLEC18B   420000 perm   158 sec   (2658 perm/sec)   p_kst 3.640929e-01   p_cons 3.478571e-03   p_joint 3.290476e-03

Joint ci ratio: 1.042228e-01	ci left: 3.108122e-03	ci right 3.452113e-03	k: 1409	n:430000
Cons ci ratio: 1.013086e-01	ci left: 3.293935e-03	ci right 3.647691e-03	k: 1491	n:430000
KS ci ratio: 7.901035e-03	ci left: 3.626081e-01	ci right 3.654867e-01	k: 156540	n:430000
CLEC18B   430000 perm   164 sec   (2627 perm/sec)   p_kst 3.640465e-01   p_cons 3.467442e-03   p_joint 3.276744e-03

Joint ci ratio: 1.030600e-01	ci left: 3.108325e-03	ci right 3.448268e-03	k: 1441	n:440000
Cons ci ratio: 1.001737e-01	ci left: 3.294399e-03	ci right 3.644008e-03	k: 1525	n:440000
KS ci ratio: 7.809565e-03	ci left: 3.626939e-01	ci right 3.655397e-01	k: 160211	n:440000
CLEC18B   440000 perm   169 sec   (2598 perm/sec)   p_kst 3.641159e-01   p_cons 3.465909e-03   p_joint 3.275000e-03

Joint ci ratio: 1.021790e-01	ci left: 3.093380e-03	ci right 3.428622e-03	k: 1466	n:450000
Cons ci ratio: 9.939636e-02	ci left: 3.273190e-03	ci right 3.617696e-03	k: 1549	n:450000
KS ci ratio: 7.726686e-03	ci left: 3.624474e-01	ci right 3.652610e-01	k: 163734	n:450000
CLEC18B   450000 perm   175 sec   (2569 perm/sec)   p_kst 3.638533e-01   p_cons 3.442222e-03   p_joint 3.257778e-03

Joint ci ratio: 1.062955e-01	ci left: 2.791093e-03	ci right 3.106523e-03	k: 1355	n:460000
Cons ci ratio: 9.826164e-02	ci left: 3.278361e-03	ci right 3.619245e-03	k: 1585	n:460000
KS ci ratio: 7.642187e-03	ci left: 3.624660e-01	ci right 3.652488e-01	k: 167374	n:460000
CLEC18B   460000 perm   181 sec   (2541 perm/sec)   p_kst 3.638565e-01   p_cons 3.445652e-03   p_joint 2.945652e-03

Joint ci ratio: 1.066941e-01	ci left: 2.710992e-03	ci right 3.018591e-03	k: 1345	n:470000
Cons ci ratio: 9.707488e-02	ci left: 3.289561e-03	ci right 3.627244e-03	k: 1624	n:470000
KS ci ratio: 7.562590e-03	ci left: 3.623500e-01	ci right 3.651028e-01	k: 170951	n:470000
CLEC18B   470000 perm   187 sec   (2514 perm/sec)   p_kst 3.637255e-01   p_cons 3.455319e-03   p_joint 2.861702e-03

Joint ci ratio: 1.053327e-01	ci left: 2.725498e-03	ci right 3.030552e-03	k: 1380	n:480000
Cons ci ratio: 9.619148e-02	ci left: 3.282018e-03	ci right 3.615687e-03	k: 1654	n:480000
KS ci ratio: 7.485699e-03	ci left: 3.622223e-01	ci right 3.649460e-01	k: 174520	n:480000
CLEC18B   480000 perm   193 sec   (2488 perm/sec)   p_kst 3.635833e-01   p_cons 3.445833e-03   p_joint 2.875000e-03

Joint ci ratio: 1.040958e-01	ci left: 2.735459e-03	ci right 3.037813e-03	k: 1413	n:490000
Cons ci ratio: 9.530340e-02	ci left: 3.276788e-03	ci right 3.606678e-03	k: 1685	n:490000
KS ci ratio: 7.408752e-03	ci left: 3.622468e-01	ci right 3.649426e-01	k: 178161	n:490000
CLEC18B   490000 perm   199 sec   (2462 perm/sec)   p_kst 3.635939e-01   p_cons 3.438776e-03   p_joint 2.883673e-03

Joint ci ratio: 1.044700e-01	ci left: 2.661266e-03	ci right 2.956542e-03	k: 1403	n:500000
Cons ci ratio: 9.430179e-02	ci left: 3.281545e-03	ci right 3.608250e-03	k: 1721	n:500000
KS ci ratio: 7.332483e-03	ci left: 3.623744e-01	ci right 3.650432e-01	k: 181854	n:500000
CLEC18B   500000 perm   205 sec   (2436 perm/sec)   p_kst 3.637080e-01   p_cons 3.442000e-03   p_joint 2.806000e-03

Joint ci ratio: 1.034074e-01	ci left: 2.664469e-03	ci right 2.956910e-03	k: 1432	n:510000
Cons ci ratio: 9.338442e-02	ci left: 3.282303e-03	ci right 3.605731e-03	k: 1755	n:510000
KS ci ratio: 7.259074e-03	ci left: 3.624618e-01	ci right 3.651044e-01	k: 185529	n:510000
CLEC18B   510000 perm   212 sec   (2411 perm/sec)   p_kst 3.637824e-01   p_cons 3.441176e-03   p_joint 2.807843e-03

Joint ci ratio: 1.089216e-01	ci left: 2.349250e-03	ci right 2.621725e-03	k: 1291	n:520000
Cons ci ratio: 9.272753e-02	ci left: 3.266139e-03	ci right 3.585587e-03	k: 1780	n:520000
KS ci ratio: 7.187409e-03	ci left: 3.625729e-01	ci right 3.651901e-01	k: 189218	n:520000
CLEC18B   520000 perm   218 sec   (2386 perm/sec)   p_kst 3.638808e-01   p_cons 3.423077e-03   p_joint 2.482692e-03

Joint ci ratio: 1.086296e-01	ci left: 2.317770e-03	ci right 2.585828e-03	k: 1298	n:530000
Cons ci ratio: 9.213550e-02	ci left: 3.246905e-03	ci right 3.562335e-03	k: 1803	n:530000
KS ci ratio: 7.118811e-03	ci left: 3.626158e-01	ci right 3.652083e-01	k: 192873	n:530000
CLEC18B   530000 perm   224 sec   (2362 perm/sec)   p_kst 3.639113e-01   p_cons 3.401887e-03   p_joint 2.449057e-03

Joint ci ratio: 1.075584e-01	ci left: 2.321695e-03	ci right 2.587391e-03	k: 1324	n:540000
Cons ci ratio: 9.145426e-02	ci left: 3.235629e-03	ci right 3.547515e-03	k: 1830	n:540000
KS ci ratio: 7.053664e-03	ci left: 3.625574e-01	ci right 3.651256e-01	k: 196474	n:540000
CLEC18B   540000 perm   231 sec   (2339 perm/sec)   p_kst 3.638407e-01   p_cons 3.388889e-03   p_joint 2.451852e-03

Joint ci ratio: 1.065974e-01	ci left: 2.321951e-03	ci right 2.585152e-03	k: 1348	n:550000
Cons ci ratio: 9.086154e-02	ci left: 3.219439e-03	ci right 3.527647e-03	k: 1854	n:550000
KS ci ratio: 6.987638e-03	ci left: 3.626755e-01	ci right 3.652204e-01	k: 200171	n:550000
CLEC18B   550000 perm   237 sec   (2317 perm/sec)   p_kst 3.639473e-01   p_cons 3.370909e-03   p_joint 2.450909e-03

Joint ci ratio: 1.057776e-01	ci left: 2.316991e-03	ci right 2.577485e-03	k: 1369	n:560000
Cons ci ratio: 9.015991e-02	ci left: 3.212562e-03	ci right 3.517611e-03	k: 1883	n:560000
KS ci ratio: 6.925034e-03	ci left: 3.626825e-01	ci right 3.652046e-01	k: 203808	n:560000
CLEC18B   560000 perm   244 sec   (2295 perm/sec)   p_kst 3.639429e-01   p_cons 3.362500e-03   p_joint 2.444643e-03

Joint ci ratio: 1.047877e-01	ci left: 2.320755e-03	ci right 2.579080e-03	k: 1395	n:570000
Cons ci ratio: 8.935718e-02	ci left: 3.214512e-03	ci right 3.516886e-03	k: 1917	n:570000
KS ci ratio: 6.863953e-03	ci left: 3.626981e-01	ci right 3.651980e-01	k: 207450	n:570000
CLEC18B   570000 perm   251 sec   (2273 perm/sec)   p_kst 3.639474e-01   p_cons 3.363158e-03   p_joint 2.447368e-03

Joint ci ratio: 1.039352e-01	ci left: 2.319362e-03	ci right 2.575303e-03	k: 1418	n:580000
Cons ci ratio: 8.864390e-02	ci left: 3.211348e-03	ci right 3.510888e-03	k: 1948	n:580000
KS ci ratio: 6.804460e-03	ci left: 3.627133e-01	ci right 3.651915e-01	k: 211092	n:580000
CLEC18B   580000 perm   258 sec   (2252 perm/sec)   p_kst 3.639517e-01   p_cons 3.358621e-03   p_joint 2.444828e-03

Joint ci ratio: 1.028176e-01	ci left: 2.331235e-03	ci right 2.585554e-03	k: 1449	n:590000
Cons ci ratio: 8.785843e-02	ci left: 3.214931e-03	ci right 3.512012e-03	k: 1983	n:590000
KS ci ratio: 6.745574e-03	ci left: 3.627907e-01	ci right 3.652479e-01	k: 214771	n:590000
CLEC18B   590000 perm   264 sec   (2231 perm/sec)   p_kst 3.640186e-01   p_cons 3.361017e-03   p_joint 2.455932e-03

Joint ci ratio: 1.018733e-01	ci left: 2.336230e-03	ci right 2.588612e-03	k: 1476	n:600000
Cons ci ratio: 8.700704e-02	ci left: 3.224928e-03	ci right 3.519899e-03	k: 2022	n:600000
KS ci ratio: 6.689057e-03	ci left: 3.628057e-01	ci right 3.652423e-01	k: 218414	n:600000
CLEC18B   600000 perm   272 sec   (2209 perm/sec)   p_kst 3.640233e-01   p_cons 3.370000e-03   p_joint 2.460000e-03

Joint ci ratio: 1.008873e-01	ci left: 2.344267e-03	ci right 2.594922e-03	k: 1505	n:610000
Cons ci ratio: 8.611709e-02	ci left: 3.239424e-03	ci right 3.532537e-03	k: 2064	n:610000
KS ci ratio: 6.634736e-03	ci left: 3.627645e-01	ci right 3.651810e-01	k: 222023	n:610000
CLEC18B   610000 perm   279 sec   (2187 perm/sec)   p_kst 3.639721e-01   p_cons 3.383607e-03   p_joint 2.467213e-03

Joint ci ratio: 1.034694e-01	ci left: 2.190142e-03	ci right 2.430675e-03	k: 1431	n:620000
Cons ci ratio: 8.543719e-02	ci left: 3.239259e-03	ci right 3.529928e-03	k: 2097	n:620000
KS ci ratio: 6.580892e-03	ci left: 3.627828e-01	ci right 3.651797e-01	k: 225668	n:620000
CLEC18B   620000 perm   286 sec   (2167 perm/sec)   p_kst 3.639806e-01   p_cons 3.382258e-03   p_joint 2.308065e-03

Joint ci ratio: 9.947763e-02	ci left: 2.336389e-03	ci right 2.582507e-03	k: 1548	n:630000
Cons ci ratio: 8.487310e-02	ci left: 3.231340e-03	ci right 3.519289e-03	k: 2125	n:630000
KS ci ratio: 6.527107e-03	ci left: 3.628879e-01	ci right 3.652658e-01	k: 229368	n:630000
CLEC18B   630000 perm   293 sec   (2147 perm/sec)   p_kst 3.640762e-01   p_cons 3.373016e-03   p_joint 2.457143e-03

Outputting figure to mutsig2_images.part000000000039/CLEC18B.3_1420_630000_0.36408_0.003373_0.0024571.png
                gene_name: CLEC18B
               theta_stop: 0.099 
                    nperm: 630000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.0034 
      ci_cons_bounds_left: 0.0032 
     ci_cons_bounds_right: 0.0035 
                  p_joint: 0.0025 
     ci_joint_bounds_left: 0.0023 
    ci_joint_bounds_right: 0.0026 

Current progress: 38 percent done.
CLEC1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.752610e-02	ci left: 3.078845e-01	ci right 3.262222e-01	k: 3170	n:10000
Cons ci ratio: 1.023572e-01	ci left: 1.213154e-01	ci right 1.345022e-01	k: 1278	n:10000
KS ci ratio: 5.270076e-02	ci left: 3.467078e-01	ci right 3.655760e-01	k: 3561	n:10000
CLEC1B   10000 perm   2 sec   (6561 perm/sec)   p_kst 3.561000e-01   p_cons 1.278000e-01   p_joint 3.170000e-01

Joint ci ratio: 5.098994e-02	ci left: 2.222499e-01	ci right 2.339292e-01	k: 4561	n:20000
Cons ci ratio: 7.207218e-02	ci left: 1.241867e-01	ci right 1.335215e-01	k: 2576	n:20000
KS ci ratio: 3.737491e-02	ci left: 3.481656e-01	ci right 3.614766e-01	k: 7096	n:20000
CLEC1B   20000 perm   4 sec   (5709 perm/sec)   p_kst 3.548000e-01   p_cons 1.288000e-01   p_joint 2.280500e-01

Outputting figure to mutsig2_images.part000000000039/CLEC1B.3_714_20000_0.3548_0.1288_0.22805.png
                gene_name: CLEC1B
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 40 percent done.
CLIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.633558e-02	ci left: 5.279684e-01	ci right 5.476096e-01	k: 5378	n:10000
Cons ci ratio: 5.540393e-02	ci left: 3.242591e-01	ci right 3.428380e-01	k: 3335	n:10000
KS ci ratio: 4.585912e-02	ci left: 4.123937e-01	ci right 4.318517e-01	k: 4221	n:10000
CLIP1   10000 perm   2 sec   (4592 perm/sec)   p_kst 4.221000e-01   p_cons 3.335000e-01   p_joint 5.378000e-01

Outputting figure to mutsig2_images.part000000000039/CLIP1.3_4380_10000_0.4221_0.3335_0.5378.png
                gene_name: CLIP1
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 43 percent done.
CLIP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.582440e-02	ci left: 1.651411e-01	ci right 1.800501e-01	k: 1725	n:10000
Cons ci ratio: 7.665324e-02	ci left: 1.992924e-01	ci right 2.152785e-01	k: 2072	n:10000
KS ci ratio: 9.201623e-02	ci left: 1.464866e-01	ci right 1.607158e-01	k: 1535	n:10000
CLIP2   10000 perm   2 sec   (5130 perm/sec)   p_kst 1.535000e-01   p_cons 2.072000e-01   p_joint 1.725000e-01

Outputting figure to mutsig2_images.part000000000039/CLIP2.3_3205_10000_0.1535_0.2072_0.1725.png
                gene_name: CLIP2
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 45 percent done.
CLK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.731428e-02	ci left: 3.094718e-01	ci right 3.278340e-01	k: 3186	n:10000
Cons ci ratio: 2.558774e-02	ci left: 6.921210e-01	ci right 7.101617e-01	k: 7012	n:10000
KS ci ratio: 7.573248e-02	ci left: 2.032352e-01	ci right 2.193333e-01	k: 2112	n:10000
CLK1   10000 perm   2 sec   (5884 perm/sec)   p_kst 2.112000e-01   p_cons 7.012000e-01   p_joint 3.186000e-01

Outputting figure to mutsig2_images.part000000000039/CLK1.3_1633_10000_0.2112_0.7012_0.3186.png
                gene_name: CLK1
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 48 percent done.
CLN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.706816e-01	ci left: 4.580994e-02	ci right 5.445453e-02	k: 500	n:10000
Cons ci ratio: 1.247955e-01	ci left: 8.416945e-02	ci right 9.547082e-02	k: 897	n:10000
KS ci ratio: 1.557042e-01	ci left: 5.494237e-02	ci right 6.431621e-02	k: 595	n:10000
CLN3   10000 perm   2 sec   (6290 perm/sec)   p_kst 5.950000e-02   p_cons 8.970000e-02   p_joint 5.000000e-02

Joint ci ratio: 1.017755e-01	ci left: 6.552521e-02	ci right 7.260070e-02	k: 1380	n:20000
Cons ci ratio: 8.931503e-02	ci left: 8.391296e-02	ci right 9.180734e-02	k: 1756	n:20000
KS ci ratio: 1.124792e-01	ci left: 5.402115e-02	ci right 6.050832e-02	k: 1144	n:20000
CLN3   20000 perm   4 sec   (5511 perm/sec)   p_kst 5.720000e-02   p_cons 8.780000e-02   p_joint 6.900000e-02

Joint ci ratio: 1.078647e-01	ci left: 3.988782e-02	ci right 4.446804e-02	k: 1264	n:30000
Cons ci ratio: 7.284261e-02	ci left: 8.481761e-02	ci right 9.126243e-02	k: 2640	n:30000
KS ci ratio: 9.093044e-02	ci left: 5.567479e-02	ci right 6.101114e-02	k: 1749	n:30000
CLN3   30000 perm   6 sec   (5253 perm/sec)   p_kst 5.830000e-02   p_cons 8.800000e-02   p_joint 4.213333e-02

Joint ci ratio: 8.925785e-02	ci left: 4.394314e-02	ci right 4.807309e-02	k: 1839	n:40000
Cons ci ratio: 6.279415e-02	ci left: 8.598053e-02	ci right 9.157934e-02	k: 3550	n:40000
KS ci ratio: 7.854006e-02	ci left: 5.631788e-02	ci right 6.094646e-02	k: 2344	n:40000
CLN3   40000 perm   8 sec   (5061 perm/sec)   p_kst 5.860000e-02   p_cons 8.875000e-02   p_joint 4.597500e-02

Outputting figure to mutsig2_images.part000000000039/CLN3.3_1377_40000_0.0586_0.08875_0.045975.png
                gene_name: CLN3
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.059 
        ci_ks_bounds_left: 0.056 
       ci_ks_bounds_right: 0.061 
                   p_cons: 0.089 
      ci_cons_bounds_left: 0.086 
     ci_cons_bounds_right: 0.092 
                  p_joint: 0.046 
     ci_joint_bounds_left: 0.044 
    ci_joint_bounds_right: 0.048 

Current progress: 50 percent done.
CLN5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.066629e-02	ci left: 2.269154e-01	ci right 2.436391e-01	k: 2352	n:10000
Cons ci ratio: 1.069622e-01	ci left: 1.120319e-01	ci right 1.247914e-01	k: 1183	n:10000
KS ci ratio: 1.118413e-01	ci left: 1.032490e-01	ci right 1.155795e-01	k: 1093	n:10000
CLN5   10000 perm   2 sec   (6316 perm/sec)   p_kst 1.093000e-01   p_cons 1.183000e-01   p_joint 2.352000e-01

Joint ci ratio: 5.511802e-02	ci left: 1.962564e-01	ci right 2.074304e-01	k: 4036	n:20000
Cons ci ratio: 7.627586e-02	ci left: 1.121830e-01	ci right 1.211288e-01	k: 2332	n:20000
KS ci ratio: 7.884271e-02	ci left: 1.056464e-01	ci right 1.143673e-01	k: 2199	n:20000
CLN5   20000 perm   4 sec   (5596 perm/sec)   p_kst 1.099500e-01   p_cons 1.166000e-01   p_joint 2.018000e-01

Outputting figure to mutsig2_images.part000000000039/CLN5.3_1240_20000_0.10995_0.1166_0.2018.png
                gene_name: CLN5
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 52 percent done.
CLPTM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.508261e-02	ci left: 2.574577e-01	ci right 2.748787e-01	k: 2661	n:10000
Cons ci ratio: 2.811442e-02	ci left: 6.509218e-01	ci right 6.695847e-01	k: 6603	n:10000
KS ci ratio: 1.065035e-01	ci left: 1.129108e-01	ci right 1.257119e-01	k: 1192	n:10000
CLPTM1   10000 perm   2 sec   (5916 perm/sec)   p_kst 1.192000e-01   p_cons 6.603000e-01   p_joint 2.661000e-01

Joint ci ratio: 6.355757e-02	ci left: 1.546971e-01	ci right 1.649020e-01	k: 3195	n:20000
Cons ci ratio: 2.039269e-02	ci left: 6.421382e-01	ci right 6.554185e-01	k: 12976	n:20000
KS ci ratio: 7.625736e-02	ci left: 1.122322e-01	ci right 1.211796e-01	k: 2333	n:20000
CLPTM1   20000 perm   4 sec   (5216 perm/sec)   p_kst 1.166500e-01   p_cons 6.488000e-01   p_joint 1.597500e-01

Outputting figure to mutsig2_images.part000000000039/CLPTM1.3_2066_20000_0.11665_0.6488_0.15975.png
                gene_name: CLPTM1
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 55 percent done.
CLSTN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.029101e-02	ci left: 4.763591e-01	ci right 4.960489e-01	k: 4862	n:10000
Cons ci ratio: 8.594478e-02	ci left: 1.647481e-01	ci right 1.796434e-01	k: 1721	n:10000
KS ci ratio: 4.678286e-02	ci left: 4.027284e-01	ci right 4.221226e-01	k: 4124	n:10000
CLSTN1   10000 perm   2 sec   (5454 perm/sec)   p_kst 4.124000e-01   p_cons 1.721000e-01   p_joint 4.862000e-01

Outputting figure to mutsig2_images.part000000000039/CLSTN1.3_3022_10000_0.4124_0.1721_0.4862.png
                gene_name: CLSTN1
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 57 percent done.
CLDN6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.639973e-02	ci left: 1.632741e-01	ci right 1.781182e-01	k: 1706	n:10000
KS ci ratio: 8.134096e-03	ci left: 9.547186e-01	ci right 9.626113e-01	k: 9588	n:10000
CLDN6   10000 perm   1 sec   (7403 perm/sec)   p_kst 9.588000e-01   p_cons 1.706000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000039/CLDN6.2_667_10000_0.9588_0.1706_1.png
                gene_name: CLDN6
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 60 percent done.
CLDND1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.468661e-03	ci left: 9.781297e-01	ci right 9.835850e-01	k: 9810	n:10000
Cons ci ratio: 4.120495e-02	ci left: 4.651709e-01	ci right 4.848436e-01	k: 4750	n:10000
KS ci ratio: 3.064035e-02	ci left: 6.111060e-01	ci right 6.302237e-01	k: 6207	n:10000
CLDND1   10000 perm   1 sec   (6796 perm/sec)   p_kst 6.207000e-01   p_cons 4.750000e-01   p_joint 9.810000e-01

Outputting figure to mutsig2_images.part000000000039/CLDND1.2_855_10000_0.6207_0.475_0.981.png
                gene_name: CLDND1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 62 percent done.
CLEC11A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.390452e-02	ci left: 5.622325e-01	ci right 5.817255e-01	k: 5720	n:10000
KS ci ratio: 9.572663e-02	ci left: 1.366833e-01	ci right 1.505251e-01	k: 1435	n:10000
CLEC11A   10000 perm   1 sec   (6733 perm/sec)   p_kst 1.435000e-01   p_cons 5.720000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000039/CLEC11A.2_988_10000_0.1435_0.572_1.png
                gene_name: CLEC11A
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 64 percent done.
CLEC17A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.881975e-02	ci left: 8.049125e-01	ci right 8.203049e-01	k: 8127	n:10000
Cons ci ratio: 4.601925e-02	ci left: 4.106995e-01	ci right 4.301469e-01	k: 4204	n:10000
KS ci ratio: 9.178519e-03	ci left: 9.435701e-01	ci right 9.523667e-01	k: 9481	n:10000
CLEC17A   10000 perm   1 sec   (6823 perm/sec)   p_kst 9.481000e-01   p_cons 4.204000e-01   p_joint 8.127000e-01

Outputting figure to mutsig2_images.part000000000039/CLEC17A.2_918_10000_0.9481_0.4204_0.8127.png
                gene_name: CLEC17A
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 67 percent done.
CLEC1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.996185e-02	ci left: 4.804561e-01	ci right 5.001496e-01	k: 4903	n:10000
KS ci ratio: 1.841078e-02	ci left: 8.116160e-01	ci right 8.267975e-01	k: 8193	n:10000
CLEC1A   10000 perm   1 sec   (6837 perm/sec)   p_kst 8.193000e-01   p_cons 4.903000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000039/CLEC1A.2_867_10000_0.8193_0.4903_1.png
                gene_name: CLEC1A
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 69 percent done.
CLEC3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.322182e-02	ci left: 3.422361e-01	ci right 3.610504e-01	k: 3516	n:10000
Cons ci ratio: 1.907924e-01	ci left: 3.662531e-02	ci right 4.444524e-02	k: 404	n:10000
KS ci ratio: 5.826473e-02	ci left: 3.024292e-01	ci right 3.206807e-01	k: 3115	n:10000
CLEC3B   10000 perm   1 sec   (7062 perm/sec)   p_kst 3.115000e-01   p_cons 4.040000e-02   p_joint 3.516000e-01

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 1.336294e-01	ci left: 3.848736e-02	ci right 4.404701e-02	k: 824	n:20000
KS ci ratio: 4.121389e-02	ci left: 3.049851e-01	ci right 3.178697e-01	k: 6228	n:20000
CLEC3B   20000 perm   3 sec   (6092 perm/sec)   p_kst 3.114000e-01   p_cons 4.120000e-02   p_joint 1

Joint ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
Cons ci ratio: 1.091778e-01	ci left: 3.894635e-02	ci right 4.347638e-02	k: 1235	n:30000
KS ci ratio: 3.380463e-02	ci left: 3.042376e-01	ci right 3.147326e-01	k: 9284	n:30000
CLEC3B   30000 perm   5 sec   (5774 perm/sec)   p_kst 3.094667e-01   p_cons 4.116667e-02   p_joint 1

Joint ci ratio: 2.761652e-02	ci left: 3.303244e-01	ci right 3.395996e-01	k: 13398	n:40000
Cons ci ratio: 9.527697e-02	ci left: 3.866238e-02	ci right 4.255468e-02	k: 1623	n:40000
KS ci ratio: 2.938046e-02	ci left: 3.034275e-01	ci right 3.125004e-01	k: 12318	n:40000
CLEC3B   40000 perm   7 sec   (5556 perm/sec)   p_kst 3.079500e-01   p_cons 4.057500e-02   p_joint 3.349500e-01

Outputting figure to mutsig2_images.part000000000039/CLEC3B.2_621_40000_0.30795_0.040575_0.33495.png
                gene_name: CLEC3B
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.041 
      ci_cons_bounds_left: 0.039 
     ci_cons_bounds_right: 0.043 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 71 percent done.
CLEC4D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.145810e-01	ci left: 1.943009e-03	ci right 4.162249e-03	k: 29	n:10000
Cons ci ratio: 2.961459e-02	ci left: 6.270843e-01	ci right 6.460361e-01	k: 6366	n:10000
KS ci ratio: 1.086451e+00	ci left: 6.202064e-04	ci right 2.095219e-03	k: 12	n:10000
CLEC4D   10000 perm   1 sec   (7070 perm/sec)   p_kst 1.200000e-03   p_cons 6.366000e-01   p_joint 2.900000e-03

Joint ci ratio: 4.892032e-01	ci left: 2.421370e-03	ci right 4.028444e-03	k: 63	n:20000
Cons ci ratio: 2.257908e-02	ci left: 5.942743e-01	ci right 6.078963e-01	k: 12022	n:20000
KS ci ratio: 7.682562e-01	ci left: 8.090923e-04	ci right 1.844697e-03	k: 25	n:20000
CLEC4D   20000 perm   3 sec   (6103 perm/sec)   p_kst 1.250000e-03   p_cons 6.011000e-01   p_joint 3.150000e-03

Joint ci ratio: 4.679749e-01	ci left: 1.789965e-03	ci right 2.909908e-03	k: 69	n:30000
Cons ci ratio: 1.835162e-02	ci left: 5.977377e-01	ci right 6.088423e-01	k: 18099	n:30000
KS ci ratio: 6.440358e-01	ci left: 8.406024e-04	ci right 1.660923e-03	k: 36	n:30000
CLEC4D   30000 perm   5 sec   (5756 perm/sec)   p_kst 1.200000e-03   p_cons 6.033000e-01   p_joint 2.300000e-03

Joint ci ratio: 3.838828e-01	ci left: 2.102270e-03	ci right 3.122080e-03	k: 103	n:40000
Cons ci ratio: 1.590556e-02	ci left: 5.981102e-01	ci right 6.077249e-01	k: 24117	n:40000
KS ci ratio: 5.380899e-01	ci left: 9.710499e-04	ci right 1.704432e-03	k: 52	n:40000
CLEC4D   40000 perm   7 sec   (5544 perm/sec)   p_kst 1.300000e-03   p_cons 6.029250e-01   p_joint 2.575000e-03

Joint ci ratio: 3.574122e-01	ci left: 1.972016e-03	ci right 2.847358e-03	k: 119	n:50000
Cons ci ratio: 1.419809e-02	ci left: 5.995771e-01	ci right 6.081708e-01	k: 30194	n:50000
KS ci ratio: 4.750417e-01	ci left: 1.038628e-03	ci right 1.701445e-03	k: 67	n:50000
CLEC4D   50000 perm   9 sec   (5367 perm/sec)   p_kst 1.340000e-03   p_cons 6.038800e-01   p_joint 2.380000e-03

Joint ci ratio: 3.297327e-01	ci left: 1.963190e-03	ci right 2.752846e-03	k: 140	n:60000
Cons ci ratio: 1.296685e-02	ci left: 5.997396e-01	ci right 6.075837e-01	k: 36220	n:60000
KS ci ratio: 4.352578e-01	ci left: 1.057388e-03	ci right 1.659178e-03	k: 80	n:60000
CLEC4D   60000 perm   11 sec   (5221 perm/sec)   p_kst 1.333333e-03   p_cons 6.036667e-01   p_joint 2.333333e-03

Joint ci ratio: 3.124968e-01	ci left: 1.892884e-03	ci right 2.606525e-03	k: 156	n:70000
Cons ci ratio: 1.201420e-02	ci left: 5.996646e-01	ci right 6.069269e-01	k: 42231	n:70000
KS ci ratio: 4.176077e-01	ci left: 9.955937e-04	ci right 1.532837e-03	k: 87	n:70000
CLEC4D   70000 perm   14 sec   (5083 perm/sec)   p_kst 1.242857e-03   p_cons 6.033000e-01   p_joint 2.228571e-03

Joint ci ratio: 2.943173e-01	ci left: 1.887257e-03	ci right 2.549672e-03	k: 176	n:80000
Cons ci ratio: 1.125560e-02	ci left: 5.991615e-01	ci right 6.059561e-01	k: 48205	n:80000
KS ci ratio: 3.998407e-01	ci left: 9.608614e-04	ci right 1.451465e-03	k: 95	n:80000
CLEC4D   80000 perm   16 sec   (4958 perm/sec)   p_kst 1.187500e-03   p_cons 6.025625e-01   p_joint 2.200000e-03

Joint ci ratio: 2.789811e-01	ci left: 1.883818e-03	ci right 2.504523e-03	k: 196	n:90000
Cons ci ratio: 1.060934e-02	ci left: 5.994720e-01	ci right 6.058770e-01	k: 54241	n:90000
KS ci ratio: 3.752384e-01	ci left: 9.844840e-04	ci right 1.448628e-03	k: 108	n:90000
CLEC4D   90000 perm   19 sec   (4846 perm/sec)   p_kst 1.200000e-03   p_cons 6.026778e-01   p_joint 2.177778e-03

Joint ci ratio: 2.670529e-01	ci left: 1.863117e-03	ci right 2.446363e-03	k: 214	n:100000
Cons ci ratio: 1.007244e-02	ci left: 5.992787e-01	ci right 6.053554e-01	k: 60232	n:100000
KS ci ratio: 3.637499e-01	ci left: 9.495334e-04	ci right 1.380242e-03	k: 115	n:100000
CLEC4D   100000 perm   21 sec   (4730 perm/sec)   p_kst 1.150000e-03   p_cons 6.023200e-01   p_joint 2.140000e-03

Joint ci ratio: 2.565345e-01	ci left: 1.846642e-03	ci right 2.398318e-03	k: 232	n:110000
Cons ci ratio: 9.603193e-03	ci left: 5.994460e-01	ci right 6.052395e-01	k: 66258	n:110000
KS ci ratio: 3.490197e-01	ci left: 9.459849e-04	ci right 1.353779e-03	k: 125	n:110000
CLEC4D   110000 perm   24 sec   (4628 perm/sec)   p_kst 1.136364e-03   p_cons 6.023455e-01   p_joint 2.109091e-03

Joint ci ratio: 2.447375e-01	ci left: 1.872392e-03	ci right 2.402130e-03	k: 255	n:120000
Cons ci ratio: 9.187561e-03	ci left: 5.999247e-01	ci right 6.054703e-01	k: 72324	n:120000
KS ci ratio: 3.334992e-01	ci left: 9.585883e-04	ci right 1.349496e-03	k: 137	n:120000
CLEC4D   120000 perm   26 sec   (4528 perm/sec)   p_kst 1.141667e-03   p_cons 6.027000e-01   p_joint 2.125000e-03

Joint ci ratio: 2.571299e-01	ci left: 1.555315e-03	ci right 2.021206e-03	k: 231	n:130000
Cons ci ratio: 8.830816e-03	ci left: 5.998336e-01	ci right 6.051618e-01	k: 78325	n:130000
KS ci ratio: 3.167255e-01	ci left: 9.908275e-04	ci right 1.370448e-03	k: 152	n:130000
CLEC4D   130000 perm   29 sec   (4439 perm/sec)   p_kst 1.169231e-03   p_cons 6.025000e-01   p_joint 1.776923e-03

Joint ci ratio: 2.238457e-01	ci left: 1.941134e-03	ci right 2.436988e-03	k: 305	n:140000
Cons ci ratio: 8.515050e-03	ci left: 5.996234e-01	ci right 6.047581e-01	k: 84307	n:140000
KS ci ratio: 3.022520e-01	ci left: 1.018883e-03	ci right 1.387990e-03	k: 167	n:140000
CLEC4D   140000 perm   32 sec   (4359 perm/sec)   p_kst 1.192857e-03   p_cons 6.021929e-01   p_joint 2.178571e-03

Joint ci ratio: 2.182177e-01	ci left: 1.912484e-03	ci right 2.387089e-03	k: 321	n:150000
Cons ci ratio: 8.240975e-03	ci left: 5.988569e-01	ci right 6.038191e-01	k: 90201	n:150000
KS ci ratio: 2.953067e-01	ci left: 1.000292e-03	ci right 1.352779e-03	k: 175	n:150000
CLEC4D   150000 perm   35 sec   (4281 perm/sec)   p_kst 1.166667e-03   p_cons 6.013400e-01   p_joint 2.140000e-03

Joint ci ratio: 2.126788e-01	ci left: 1.893469e-03	ci right 2.349873e-03	k: 338	n:160000
Cons ci ratio: 7.984641e-03	ci left: 5.986144e-01	ci right 6.034195e-01	k: 96163	n:160000
KS ci ratio: 2.880366e-01	ci left: 9.899087e-04	ci right 1.328585e-03	k: 184	n:160000
CLEC4D   160000 perm   38 sec   (4198 perm/sec)   p_kst 1.150000e-03   p_cons 6.010188e-01   p_joint 2.112500e-03

Joint ci ratio: 2.084232e-01	ci left: 1.860096e-03	ci right 2.298339e-03	k: 352	n:170000
Cons ci ratio: 7.735054e-03	ci left: 5.993800e-01	ci right 6.040401e-01	k: 102291	n:170000
KS ci ratio: 2.827410e-01	ci left: 9.699069e-04	ci right 1.294551e-03	k: 191	n:170000
CLEC4D   170000 perm   41 sec   (4123 perm/sec)   p_kst 1.123529e-03   p_cons 6.017118e-01   p_joint 2.070588e-03

Joint ci ratio: 2.014107e-01	ci left: 1.888524e-03	ci right 2.316654e-03	k: 377	n:180000
Cons ci ratio: 7.512343e-03	ci left: 5.997510e-01	ci right 6.042790e-01	k: 108363	n:180000
KS ci ratio: 2.742986e-01	ci left: 9.780355e-04	ci right 1.293941e-03	k: 203	n:180000
CLEC4D   180000 perm   44 sec   (4048 perm/sec)   p_kst 1.127778e-03   p_cons 6.020167e-01   p_joint 2.094444e-03

Joint ci ratio: 1.965330e-01	ci left: 1.884146e-03	ci right 2.299701e-03	k: 396	n:190000
Cons ci ratio: 7.310628e-03	ci left: 5.999002e-01	ci right 6.043072e-01	k: 114400	n:190000
KS ci ratio: 2.671898e-01	ci left: 9.805257e-04	ci right 1.287653e-03	k: 214	n:190000
CLEC4D   190000 perm   48 sec   (3978 perm/sec)   p_kst 1.126316e-03   p_cons 6.021053e-01   p_joint 2.084211e-03

Joint ci ratio: 1.908474e-01	ci left: 1.904122e-03	ci right 2.310525e-03	k: 420	n:200000
Cons ci ratio: 7.127086e-03	ci left: 5.998508e-01	ci right 6.041462e-01	k: 120400	n:200000
KS ci ratio: 2.588919e-01	ci left: 9.968860e-04	ci right 1.297873e-03	k: 228	n:200000
CLEC4D   200000 perm   51 sec   (3911 perm/sec)   p_kst 1.140000e-03   p_cons 6.020000e-01   p_joint 2.100000e-03

Joint ci ratio: 1.858378e-01	ci left: 1.917811e-03	ci right 2.315180e-03	k: 443	n:210000
Cons ci ratio: 6.952700e-03	ci left: 6.000838e-01	ci right 6.042753e-01	k: 126458	n:210000
KS ci ratio: 2.518413e-01	ci left: 1.007359e-03	ci right 1.301927e-03	k: 241	n:210000
CLEC4D   210000 perm   55 sec   (3847 perm/sec)   p_kst 1.147619e-03   p_cons 6.021810e-01   p_joint 2.109524e-03

Joint ci ratio: 1.813977e-01	ci left: 1.926043e-03	ci right 2.314535e-03	k: 465	n:220000
Cons ci ratio: 6.797219e-03	ci left: 5.998236e-01	ci right 6.039191e-01	k: 132412	n:220000
KS ci ratio: 2.439048e-01	ci left: 1.029783e-03	ci right 1.319981e-03	k: 257	n:220000
CLEC4D   220000 perm   58 sec   (3782 perm/sec)   p_kst 1.168182e-03   p_cons 6.018727e-01   p_joint 2.113636e-03

Joint ci ratio: 1.779939e-01	ci left: 1.917042e-03	ci right 2.295681e-03	k: 483	n:230000
Cons ci ratio: 6.646831e-03	ci left: 5.999395e-01	ci right 6.039448e-01	k: 138447	n:230000
KS ci ratio: 2.397603e-01	ci left: 1.021768e-03	ci right 1.304088e-03	k: 266	n:230000
CLEC4D   230000 perm   62 sec   (3719 perm/sec)   p_kst 1.156522e-03   p_cons 6.019435e-01   p_joint 2.100000e-03

Joint ci ratio: 1.754767e-01	ci left: 1.892916e-03	ci right 2.260942e-03	k: 497	n:240000
Cons ci ratio: 6.506003e-03	ci left: 6.000467e-01	ci right 6.039675e-01	k: 144482	n:240000
KS ci ratio: 2.371137e-01	ci left: 1.002700e-03	ci right 1.276244e-03	k: 272	n:240000
CLEC4D   240000 perm   66 sec   (3659 perm/sec)   p_kst 1.133333e-03   p_cons 6.020083e-01   p_joint 2.070833e-03

Joint ci ratio: 1.720560e-01	ci left: 1.893720e-03	ci right 2.253980e-03	k: 517	n:250000
Cons ci ratio: 6.374560e-03	ci left: 6.000861e-01	ci right 6.039275e-01	k: 150502	n:250000
KS ci ratio: 2.333004e-01	ci left: 9.964703e-04	ci right 1.263312e-03	k: 281	n:250000
CLEC4D   250000 perm   69 sec   (3601 perm/sec)   p_kst 1.124000e-03   p_cons 6.020080e-01   p_joint 2.068000e-03

Joint ci ratio: 1.677380e-01	ci left: 1.920318e-03	ci right 2.275543e-03	k: 544	n:260000
Cons ci ratio: 6.248970e-03	ci left: 6.002617e-01	ci right 6.040283e-01	k: 156558	n:260000
KS ci ratio: 2.281013e-01	ci left: 1.005256e-03	ci right 1.267607e-03	k: 294	n:260000
CLEC4D   260000 perm   73 sec   (3547 perm/sec)   p_kst 1.130769e-03   p_cons 6.021462e-01   p_joint 2.092308e-03

Joint ci ratio: 1.654781e-01	ci left: 1.902432e-03	ci right 2.249136e-03	k: 559	n:270000
Cons ci ratio: 6.128293e-03	ci left: 6.005992e-01	ci right 6.042949e-01	k: 162661	n:270000
KS ci ratio: 2.247004e-01	ci left: 9.994666e-04	ci right 1.255880e-03	k: 303	n:270000
CLEC4D   270000 perm   77 sec   (3493 perm/sec)   p_kst 1.122222e-03   p_cons 6.024481e-01   p_joint 2.070370e-03

Joint ci ratio: 1.626002e-01	ci left: 1.902985e-03	ci right 2.243168e-03	k: 579	n:280000
Cons ci ratio: 6.017931e-03	ci left: 6.006273e-01	ci right 6.042563e-01	k: 168684	n:280000
KS ci ratio: 2.203924e-01	ci left: 1.004240e-03	ci right 1.256269e-03	k: 315	n:280000
CLEC4D   280000 perm   81 sec   (3441 perm/sec)   p_kst 1.125000e-03   p_cons 6.024429e-01   p_joint 2.067857e-03

Joint ci ratio: 1.720807e-01	ci left: 1.632498e-03	ci right 1.943111e-03	k: 517	n:290000
Cons ci ratio: 5.913751e-03	ci left: 6.006195e-01	ci right 6.041853e-01	k: 174697	n:290000
KS ci ratio: 2.173202e-01	ci left: 9.989441e-04	ci right 1.245683e-03	k: 324	n:290000
CLEC4D   290000 perm   86 sec   (3389 perm/sec)   p_kst 1.117241e-03   p_cons 6.024034e-01   p_joint 1.782759e-03

Joint ci ratio: 1.674539e-01	ci left: 1.670644e-03	ci right 1.979107e-03	k: 546	n:300000
Cons ci ratio: 5.814639e-03	ci left: 6.006261e-01	ci right 6.041320e-01	k: 180714	n:300000
KS ci ratio: 2.109240e-01	ci left: 1.028740e-03	ci right 1.274393e-03	k: 344	n:300000
CLEC4D   300000 perm   90 sec   (3338 perm/sec)   p_kst 1.146667e-03   p_cons 6.023800e-01   p_joint 1.820000e-03

Joint ci ratio: 1.546703e-01	ci left: 1.907793e-03	ci right 2.230661e-03	k: 640	n:310000
Cons ci ratio: 5.717806e-03	ci left: 6.008457e-01	ci right 6.042943e-01	k: 186797	n:310000
KS ci ratio: 2.091153e-01	ci left: 1.013891e-03	ci right 1.253656e-03	k: 350	n:310000
CLEC4D   310000 perm   94 sec   (3289 perm/sec)   p_kst 1.129032e-03   p_cons 6.025710e-01   p_joint 2.064516e-03

Joint ci ratio: 1.519674e-01	ci left: 1.917292e-03	ci right 2.235583e-03	k: 663	n:320000
Cons ci ratio: 5.627379e-03	ci left: 6.009051e-01	ci right 6.042993e-01	k: 192833	n:320000
KS ci ratio: 2.059137e-01	ci left: 1.014796e-03	ci right 1.250638e-03	k: 361	n:320000
CLEC4D   320000 perm   99 sec   (3243 perm/sec)   p_kst 1.128125e-03   p_cons 6.026031e-01   p_joint 2.071875e-03

Joint ci ratio: 1.495104e-01	ci left: 1.923345e-03	ci right 2.237017e-03	k: 685	n:330000
Cons ci ratio: 5.539007e-03	ci left: 6.011433e-01	ci right 6.044852e-01	k: 198929	n:330000
KS ci ratio: 2.036765e-01	ci left: 1.007043e-03	ci right 1.238225e-03	k: 369	n:330000
CLEC4D   330000 perm   103 sec   (3200 perm/sec)   p_kst 1.118182e-03   p_cons 6.028152e-01   p_joint 2.075758e-03

Joint ci ratio: 1.470649e-01	ci left: 1.931914e-03	ci right 2.241376e-03	k: 708	n:340000
Cons ci ratio: 5.458089e-03	ci left: 6.010676e-01	ci right 6.043601e-01	k: 204923	n:340000
KS ci ratio: 2.009791e-01	ci left: 1.005346e-03	ci right 1.232706e-03	k: 379	n:340000
CLEC4D   340000 perm   108 sec   (3155 perm/sec)   p_kst 1.114706e-03   p_cons 6.027147e-01   p_joint 2.082353e-03

Joint ci ratio: 1.451335e-01	ci left: 1.929018e-03	ci right 2.233606e-03	k: 727	n:350000
Cons ci ratio: 5.380359e-03	ci left: 6.010194e-01	ci right 6.042646e-01	k: 210925	n:350000
KS ci ratio: 1.983860e-01	ci left: 1.003765e-03	ci right 1.227484e-03	k: 389	n:350000
CLEC4D   350000 perm   112 sec   (3112 perm/sec)   p_kst 1.111429e-03   p_cons 6.026429e-01   p_joint 2.077143e-03

Joint ci ratio: 1.432762e-01	ci left: 1.926307e-03	ci right 2.226243e-03	k: 746	n:360000
Cons ci ratio: 5.305396e-03	ci left: 6.010159e-01	ci right 6.042158e-01	k: 216942	n:360000
KS ci ratio: 1.961364e-01	ci left: 9.996472e-04	ci right 1.219621e-03	k: 398	n:360000
CLEC4D   360000 perm   117 sec   (3072 perm/sec)   p_kst 1.105556e-03   p_cons 6.026167e-01   p_joint 2.072222e-03

Joint ci ratio: 1.530312e-01	ci left: 1.634784e-03	ci right 1.908248e-03	k: 654	n:370000
Cons ci ratio: 5.234249e-03	ci left: 6.009426e-01	ci right 6.040990e-01	k: 222933	n:370000
KS ci ratio: 1.934874e-01	ci left: 1.000910e-03	ci right 1.217836e-03	k: 409	n:370000
CLEC4D   370000 perm   122 sec   (3033 perm/sec)   p_kst 1.105405e-03   p_cons 6.025216e-01   p_joint 1.767568e-03

Joint ci ratio: 1.396769e-01	ci left: 1.923922e-03	ci right 2.215334e-03	k: 785	n:380000
Cons ci ratio: 5.165663e-03	ci left: 6.008945e-01	ci right 6.040092e-01	k: 228932	n:380000
KS ci ratio: 1.900413e-01	ci left: 1.012149e-03	ci right 1.227154e-03	k: 424	n:380000
CLEC4D   380000 perm   127 sec   (2995 perm/sec)   p_kst 1.115789e-03   p_cons 6.024526e-01   p_joint 2.065789e-03

Joint ci ratio: 1.493165e-01	ci left: 1.632364e-03	ci right 1.898203e-03	k: 687	n:390000
Cons ci ratio: 5.099976e-03	ci left: 6.008235e-01	ci right 6.038980e-01	k: 234921	n:390000
KS ci ratio: 1.880611e-01	ci left: 1.008181e-03	ci right 1.219856e-03	k: 433	n:390000
CLEC4D   390000 perm   132 sec   (2959 perm/sec)   p_kst 1.110256e-03   p_cons 6.023615e-01   p_joint 1.761538e-03

Joint ci ratio: 1.479264e-01	ci left: 1.622846e-03	ci right 1.884457e-03	k: 700	n:400000
Cons ci ratio: 5.034289e-03	ci left: 6.009889e-01	ci right 6.040246e-01	k: 241003	n:400000
KS ci ratio: 1.859315e-01	ci left: 1.006806e-03	ci right 1.215529e-03	k: 443	n:400000
CLEC4D   400000 perm   137 sec   (2921 perm/sec)   p_kst 1.107500e-03   p_cons 6.025075e-01   p_joint 1.750000e-03

Joint ci ratio: 1.463691e-01	ci left: 1.618502e-03	ci right 1.876426e-03	k: 715	n:410000
Cons ci ratio: 4.973050e-03	ci left: 6.009562e-01	ci right 6.039546e-01	k: 247007	n:410000
KS ci ratio: 1.836702e-01	ci left: 1.007838e-03	ci right 1.213951e-03	k: 454	n:410000
CLEC4D   410000 perm   142 sec   (2887 perm/sec)   p_kst 1.107317e-03   p_cons 6.024561e-01   p_joint 1.743902e-03

Joint ci ratio: 1.446619e-01	ci left: 1.618969e-03	ci right 1.873698e-03	k: 732	n:420000
Cons ci ratio: 4.912772e-03	ci left: 6.010443e-01	ci right 6.040067e-01	k: 253061	n:420000
KS ci ratio: 1.812949e-01	ci left: 1.011108e-03	ci right 1.214922e-03	k: 466	n:420000
CLEC4D   420000 perm   147 sec   (2851 perm/sec)   p_kst 1.109524e-03   p_cons 6.025262e-01   p_joint 1.742857e-03

Joint ci ratio: 1.429177e-01	ci left: 1.621673e-03	ci right 1.873489e-03	k: 750	n:430000
Cons ci ratio: 4.855954e-03	ci left: 6.009982e-01	ci right 6.039260e-01	k: 259059	n:430000
KS ci ratio: 1.791967e-01	ci left: 1.012022e-03	ci right 1.213402e-03	k: 477	n:430000
CLEC4D   430000 perm   153 sec   (2817 perm/sec)   p_kst 1.109302e-03   p_cons 6.024628e-01   p_joint 1.744186e-03

Joint ci ratio: 1.404143e-01	ci left: 1.644007e-03	ci right 1.894445e-03	k: 777	n:440000
Cons ci ratio: 4.800151e-03	ci left: 6.010454e-01	ci right 6.039396e-01	k: 265097	n:440000
KS ci ratio: 1.755598e-01	ci left: 1.032459e-03	ci right 1.233294e-03	k: 497	n:440000
CLEC4D   440000 perm   158 sec   (2784 perm/sec)   p_kst 1.129545e-03   p_cons 6.024932e-01   p_joint 1.765909e-03

Joint ci ratio: 1.383829e-01	ci left: 1.656803e-03	ci right 1.905238e-03	k: 800	n:450000
Cons ci ratio: 4.746845e-03	ci left: 6.010284e-01	ci right 6.038903e-01	k: 271107	n:450000
KS ci ratio: 1.724692e-01	ci left: 1.047774e-03	ci right 1.247627e-03	k: 515	n:450000
CLEC4D   450000 perm   164 sec   (2751 perm/sec)   p_kst 1.144444e-03   p_cons 6.024600e-01   p_joint 1.777778e-03

Joint ci ratio: 1.364372e-01	ci left: 1.669067e-03	ci right 1.915537e-03	k: 823	n:460000
Cons ci ratio: 4.695703e-03	ci left: 6.009688e-01	ci right 6.037995e-01	k: 277097	n:460000
KS ci ratio: 1.706599e-01	ci left: 1.047882e-03	ci right 1.245444e-03	k: 526	n:460000
CLEC4D   460000 perm   169 sec   (2718 perm/sec)   p_kst 1.143478e-03   p_cons 6.023848e-01   p_joint 1.789130e-03

Joint ci ratio: 1.349709e-01	ci left: 1.670553e-03	ci right 1.914378e-03	k: 841	n:470000
Cons ci ratio: 4.644714e-03	ci left: 6.010630e-01	ci right 6.038634e-01	k: 283158	n:470000
KS ci ratio: 1.687493e-01	ci left: 1.050035e-03	ci right 1.245560e-03	k: 538	n:470000
CLEC4D   470000 perm   175 sec   (2687 perm/sec)   p_kst 1.144681e-03   p_cons 6.024638e-01   p_joint 1.789362e-03

Joint ci ratio: 1.333957e-01	ci left: 1.676018e-03	ci right 1.917559e-03	k: 861	n:480000
Cons ci ratio: 4.596370e-03	ci left: 6.010472e-01	ci right 6.038182e-01	k: 289168	n:480000
KS ci ratio: 1.664485e-01	ci left: 1.058098e-03	ci right 1.252170e-03	k: 553	n:480000
CLEC4D   480000 perm   181 sec   (2656 perm/sec)   p_kst 1.152083e-03   p_cons 6.024333e-01   p_joint 1.793750e-03

Joint ci ratio: 1.320995e-01	ci left: 1.675355e-03	ci right 1.914271e-03	k: 878	n:490000
Cons ci ratio: 4.548167e-03	ci left: 6.011731e-01	ci right 6.039155e-01	k: 295247	n:490000
KS ci ratio: 1.648204e-01	ci left: 1.058023e-03	ci right 1.249994e-03	k: 564	n:490000
CLEC4D   490000 perm   187 sec   (2626 perm/sec)   p_kst 1.151020e-03   p_cons 6.025449e-01   p_joint 1.791837e-03

Joint ci ratio: 1.314296e-01	ci left: 1.659254e-03	ci right 1.894579e-03	k: 887	n:500000
Cons ci ratio: 4.500660e-03	ci left: 6.013781e-01	ci right 6.040927e-01	k: 301368	n:500000
KS ci ratio: 1.636663e-01	ci left: 1.052205e-03	ci right 1.241652e-03	k: 572	n:500000
CLEC4D   500000 perm   193 sec   (2596 perm/sec)   p_kst 1.144000e-03   p_cons 6.027360e-01   p_joint 1.774000e-03

Joint ci ratio: 1.299021e-01	ci left: 1.666550e-03	ci right 1.899952e-03	k: 908	n:510000
Cons ci ratio: 4.455849e-03	ci left: 6.014418e-01	ci right 6.041296e-01	k: 307421	n:510000
KS ci ratio: 1.617024e-01	ci left: 1.057907e-03	ci right 1.245873e-03	k: 586	n:510000
CLEC4D   510000 perm   199 sec   (2567 perm/sec)   p_kst 1.149020e-03   p_cons 6.027863e-01   p_joint 1.780392e-03

Joint ci ratio: 1.288438e-01	ci left: 1.662414e-03	ci right 1.893194e-03	k: 923	n:520000
Cons ci ratio: 4.412972e-03	ci left: 6.014358e-01	ci right 6.040977e-01	k: 313439	n:520000
KS ci ratio: 1.603426e-01	ci left: 1.056018e-03	ci right 1.241919e-03	k: 596	n:520000
CLEC4D   520000 perm   205 sec   (2538 perm/sec)   p_kst 1.146154e-03   p_cons 6.027673e-01   p_joint 1.775000e-03

Joint ci ratio: 1.275390e-01	ci left: 1.665747e-03	ci right 1.894471e-03	k: 942	n:530000
Cons ci ratio: 4.370843e-03	ci left: 6.014811e-01	ci right 6.041177e-01	k: 319484	n:530000
KS ci ratio: 1.583649e-01	ci left: 1.063267e-03	ci right 1.247916e-03	k: 611	n:530000
CLEC4D   530000 perm   211 sec   (2511 perm/sec)   p_kst 1.152830e-03   p_cons 6.028000e-01   p_joint 1.777358e-03

Joint ci ratio: 1.266032e-01	ci left: 1.660001e-03	ci right 1.886138e-03	k: 956	n:540000
Cons ci ratio: 4.329966e-03	ci left: 6.015175e-01	ci right 6.041295e-01	k: 325525	n:540000
KS ci ratio: 1.572136e-01	ci left: 1.059585e-03	ci right 1.242131e-03	k: 620	n:540000
CLEC4D   540000 perm   217 sec   (2484 perm/sec)   p_kst 1.148148e-03   p_cons 6.028241e-01   p_joint 1.770370e-03

Joint ci ratio: 1.257525e-01	ci left: 1.652709e-03	ci right 1.876228e-03	k: 969	n:550000
Cons ci ratio: 4.290931e-03	ci left: 6.014726e-01	ci right 6.040608e-01	k: 331522	n:550000
KS ci ratio: 1.563356e-01	ci left: 1.052548e-03	ci right 1.232773e-03	k: 627	n:550000
CLEC4D   550000 perm   224 sec   (2457 perm/sec)   p_kst 1.140000e-03   p_cons 6.027673e-01   p_joint 1.761818e-03

Joint ci ratio: 1.247282e-01	ci left: 1.650873e-03	ci right 1.872190e-03	k: 985	n:560000
Cons ci ratio: 4.253203e-03	ci left: 6.013991e-01	ci right 6.039641e-01	k: 337502	n:560000
KS ci ratio: 1.555948e-01	ci left: 1.044048e-03	ci right 1.221892e-03	k: 633	n:560000
CLEC4D   560000 perm   230 sec   (2432 perm/sec)   p_kst 1.130357e-03   p_cons 6.026821e-01   p_joint 1.758929e-03

Joint ci ratio: 1.233591e-01	ci left: 1.659310e-03	ci right 1.879137e-03	k: 1007	n:570000
Cons ci ratio: 4.216252e-03	ci left: 6.013510e-01	ci right 6.038935e-01	k: 343495	n:570000
KS ci ratio: 1.537857e-01	ci left: 1.051029e-03	ci right 1.227789e-03	k: 648	n:570000
CLEC4D   570000 perm   237 sec   (2406 perm/sec)   p_kst 1.136842e-03   p_cons 6.026228e-01   p_joint 1.766667e-03

Joint ci ratio: 1.224516e-01	ci left: 1.655768e-03	ci right 1.873395e-03	k: 1022	n:580000
Cons ci ratio: 4.180517e-03	ci left: 6.012737e-01	ci right 6.037943e-01	k: 349470	n:580000
KS ci ratio: 1.527307e-01	ci left: 1.047830e-03	ci right 1.222732e-03	k: 657	n:580000
CLEC4D   580000 perm   244 sec   (2381 perm/sec)   p_kst 1.132759e-03   p_cons 6.025345e-01   p_joint 1.762069e-03

Joint ci ratio: 1.209237e-01	ci left: 1.670431e-03	ci right 1.887051e-03	k: 1048	n:590000
Cons ci ratio: 4.145809e-03	ci left: 6.011838e-01	ci right 6.036830e-01	k: 355436	n:590000
KS ci ratio: 1.510186e-01	ci left: 1.054528e-03	ci right 1.228396e-03	k: 672	n:590000
CLEC4D   590000 perm   250 sec   (2356 perm/sec)   p_kst 1.138983e-03   p_cons 6.024339e-01   p_joint 1.776271e-03

Joint ci ratio: 1.199557e-01	ci left: 1.670070e-03	ci right 1.884786e-03	k: 1065	n:600000
Cons ci ratio: 4.110662e-03	ci left: 6.012471e-01	ci right 6.037253e-01	k: 361492	n:600000
KS ci ratio: 1.496899e-01	ci left: 1.056200e-03	ci right 1.228675e-03	k: 684	n:600000
CLEC4D   600000 perm   257 sec   (2334 perm/sec)   p_kst 1.140000e-03   p_cons 6.024867e-01   p_joint 1.775000e-03

Joint ci ratio: 1.191761e-01	ci left: 1.664956e-03	ci right 1.877525e-03	k: 1079	n:610000
Cons ci ratio: 4.076576e-03	ci left: 6.012870e-01	ci right 6.037448e-01	k: 367535	n:610000
KS ci ratio: 1.487164e-01	ci left: 1.053088e-03	ci right 1.223837e-03	k: 693	n:610000
CLEC4D   610000 perm   264 sec   (2311 perm/sec)   p_kst 1.136066e-03   p_cons 6.025164e-01   p_joint 1.768852e-03

Joint ci ratio: 1.181951e-01	ci left: 1.666272e-03	ci right 1.877136e-03	k: 1097	n:620000
Cons ci ratio: 4.043134e-03	ci left: 6.013483e-01	ci right 6.037862e-01	k: 373592	n:620000
KS ci ratio: 1.474470e-01	ci left: 1.054741e-03	ci right 1.224169e-03	k: 705	n:620000
CLEC4D   620000 perm   271 sec   (2289 perm/sec)   p_kst 1.137097e-03   p_cons 6.025677e-01   p_joint 1.769355e-03

Joint ci ratio: 1.173962e-01	ci left: 1.662931e-03	ci right 1.871852e-03	k: 1112	n:630000
Cons ci ratio: 4.010673e-03	ci left: 6.013872e-01	ci right 6.038055e-01	k: 379636	n:630000
KS ci ratio: 1.463116e-01	ci left: 1.054818e-03	ci right 1.222840e-03	k: 716	n:630000
CLEC4D   630000 perm   278 sec   (2267 perm/sec)   p_kst 1.136508e-03   p_cons 6.025968e-01   p_joint 1.765079e-03

Joint ci ratio: 1.163553e-01	ci left: 1.667285e-03	ci right 1.874767e-03	k: 1132	n:640000
Cons ci ratio: 3.980463e-03	ci left: 6.012466e-01	ci right 6.036462e-01	k: 385566	n:640000
KS ci ratio: 1.450028e-01	ci left: 1.057908e-03	ci right 1.224785e-03	k: 729	n:640000
CLEC4D   640000 perm   285 sec   (2246 perm/sec)   p_kst 1.139063e-03   p_cons 6.024469e-01   p_joint 1.768750e-03

Joint ci ratio: 1.155424e-01	ci left: 1.665536e-03	ci right 1.871253e-03	k: 1148	n:650000
Cons ci ratio: 3.950568e-03	ci left: 6.011536e-01	ci right 6.035347e-01	k: 391524	n:650000
KS ci ratio: 1.440199e-01	ci left: 1.056461e-03	ci right 1.221883e-03	k: 739	n:650000
CLEC4D   650000 perm   292 sec   (2224 perm/sec)   p_kst 1.136923e-03   p_cons 6.023446e-01   p_joint 1.766154e-03

Joint ci ratio: 1.143050e-01	ci left: 1.677091e-03	ci right 1.881868e-03	k: 1173	n:660000
Cons ci ratio: 3.920085e-03	ci left: 6.012166e-01	ci right 6.035795e-01	k: 397583	n:660000
KS ci ratio: 1.421113e-01	ci left: 1.069673e-03	ci right 1.234756e-03	k: 759	n:660000
CLEC4D   660000 perm   300 sec   (2203 perm/sec)   p_kst 1.150000e-03   p_cons 6.023985e-01   p_joint 1.777273e-03

Joint ci ratio: 1.138701e-01	ci left: 1.665108e-03	ci right 1.867597e-03	k: 1182	n:670000
Cons ci ratio: 3.890696e-03	ci left: 6.012284e-01	ci right 6.035737e-01	k: 403609	n:670000
KS ci ratio: 1.416469e-01	ci left: 1.060905e-03	ci right 1.224054e-03	k: 764	n:670000
CLEC4D   670000 perm   307 sec   (2182 perm/sec)   p_kst 1.140299e-03   p_cons 6.024015e-01   p_joint 1.764179e-03

Joint ci ratio: 1.132974e-01	ci left: 1.657767e-03	ci right 1.858281e-03	k: 1194	n:680000
Cons ci ratio: 3.861402e-03	ci left: 6.013092e-01	ci right 6.036370e-01	k: 409682	n:680000
KS ci ratio: 1.408212e-01	ci left: 1.058071e-03	ci right 1.219756e-03	k: 773	n:680000
CLEC4D   680000 perm   314 sec   (2163 perm/sec)   p_kst 1.136765e-03   p_cons 6.024735e-01   p_joint 1.755882e-03

Joint ci ratio: 1.124072e-01	ci left: 1.660500e-03	ci right 1.859662e-03	k: 1213	n:690000
Cons ci ratio: 3.833547e-03	ci left: 6.012890e-01	ci right 6.036000e-01	k: 415687	n:690000
KS ci ratio: 1.397420e-01	ci left: 1.059518e-03	ci right 1.220080e-03	k: 785	n:690000
CLEC4D   690000 perm   322 sec   (2143 perm/sec)   p_kst 1.137681e-03   p_cons 6.024449e-01   p_joint 1.757971e-03

Joint ci ratio: 1.115830e-01	ci left: 1.661773e-03	ci right 1.859530e-03	k: 1231	n:700000
Cons ci ratio: 3.805186e-03	ci left: 6.014082e-01	ci right 6.037024e-01	k: 421789	n:700000
KS ci ratio: 1.389490e-01	ci left: 1.056791e-03	ci right 1.215955e-03	k: 794	n:700000
CLEC4D   700000 perm   330 sec   (2124 perm/sec)   p_kst 1.134286e-03   p_cons 6.025557e-01   p_joint 1.758571e-03

Joint ci ratio: 1.108210e-01	ci left: 1.661645e-03	ci right 1.857949e-03	k: 1248	n:710000
Cons ci ratio: 3.779411e-03	ci left: 6.012746e-01	ci right 6.035527e-01	k: 427714	n:710000
KS ci ratio: 1.379976e-01	ci left: 1.056862e-03	ci right 1.214859e-03	k: 805	n:710000
CLEC4D   710000 perm   337 sec   (2105 perm/sec)   p_kst 1.133803e-03   p_cons 6.024141e-01   p_joint 1.757746e-03

Joint ci ratio: 1.105126e-01	ci left: 1.648019e-03	ci right 1.842136e-03	k: 1255	n:720000
Cons ci ratio: 3.752640e-03	ci left: 6.013379e-01	ci right 6.036001e-01	k: 433778	n:720000
KS ci ratio: 1.377423e-01	ci left: 1.046206e-03	ci right 1.202296e-03	k: 808	n:720000
CLEC4D   720000 perm   345 sec   (2086 perm/sec)   p_kst 1.122222e-03   p_cons 6.024694e-01   p_joint 1.743056e-03

Joint ci ratio: 1.013811e-01	ci left: 1.940195e-03	ci right 2.148720e-03	k: 1491	n:730000
Cons ci ratio: 3.726206e-03	ci left: 6.014284e-01	ci right 6.036749e-01	k: 439863	n:730000
KS ci ratio: 1.363170e-01	ci left: 1.054364e-03	ci right 1.209912e-03	k: 825	n:730000
CLEC4D   730000 perm   353 sec   (2068 perm/sec)   p_kst 1.130137e-03   p_cons 6.025521e-01   p_joint 2.042466e-03

Joint ci ratio: 1.007084e-01	ci left: 1.940320e-03	ci right 2.147393e-03	k: 1511	n:740000
Cons ci ratio: 3.700406e-03	ci left: 6.015056e-01	ci right 6.037368e-01	k: 445940	n:740000
KS ci ratio: 1.353374e-01	ci left: 1.055781e-03	ci right 1.210329e-03	k: 837	n:740000
CLEC4D   740000 perm   361 sec   (2050 perm/sec)   p_kst 1.131081e-03   p_cons 6.026216e-01   p_joint 2.041892e-03

Joint ci ratio: 9.995090e-02	ci left: 1.944346e-03	ci right 2.150197e-03	k: 1534	n:750000
Cons ci ratio: 3.675165e-03	ci left: 6.015768e-01	ci right 6.037931e-01	k: 452014	n:750000
KS ci ratio: 1.341418e-01	ci left: 1.061030e-03	ci right 1.214864e-03	k: 852	n:750000
CLEC4D   750000 perm   369 sec   (2032 perm/sec)   p_kst 1.136000e-03   p_cons 6.026853e-01   p_joint 2.045333e-03

Joint ci ratio: 1.073131e-01	ci left: 1.658558e-03	ci right 1.847903e-03	k: 1331	n:760000
Cons ci ratio: 3.651777e-03	ci left: 6.014698e-01	ci right 6.036715e-01	k: 457954	n:760000
KS ci ratio: 1.335175e-01	ci left: 1.057243e-03	ci right 1.209758e-03	k: 860	n:760000
CLEC4D   760000 perm   377 sec   (2014 perm/sec)   p_kst 1.131579e-03   p_cons 6.025711e-01   p_joint 1.751316e-03

Joint ci ratio: 1.065162e-01	ci left: 1.662298e-03	ci right 1.850573e-03	k: 1351	n:770000
Cons ci ratio: 3.627197e-03	ci left: 6.015813e-01	ci right 6.037686e-01	k: 464060	n:770000
KS ci ratio: 1.328253e-01	ci left: 1.054812e-03	ci right 1.206124e-03	k: 869	n:770000
CLEC4D   770000 perm   385 sec   (1997 perm/sec)   p_kst 1.128571e-03   p_cons 6.026753e-01   p_joint 1.754545e-03

Joint ci ratio: 1.054294e-01	ci left: 1.675933e-03	ci right 1.863695e-03	k: 1379	n:780000
Cons ci ratio: 3.604264e-03	ci left: 6.015361e-01	ci right 6.037093e-01	k: 470046	n:780000
KS ci ratio: 1.315458e-01	ci left: 1.062363e-03	ci right 1.213176e-03	k: 886	n:780000
CLEC4D   780000 perm   394 sec   (1980 perm/sec)   p_kst 1.135897e-03   p_cons 6.026231e-01   p_joint 1.767949e-03

Joint ci ratio: 1.048612e-01	ci left: 1.673207e-03	ci right 1.859591e-03	k: 1394	n:790000
Cons ci ratio: 3.580984e-03	ci left: 6.015959e-01	ci right 6.037553e-01	k: 476114	n:790000
KS ci ratio: 1.309568e-01	ci left: 1.058709e-03	ci right 1.208279e-03	k: 894	n:790000
CLEC4D   790000 perm   402 sec   (1964 perm/sec)   p_kst 1.131646e-03   p_cons 6.026759e-01   p_joint 1.764557e-03

Joint ci ratio: 1.041542e-01	ci left: 1.675421e-03	ci right 1.860716e-03	k: 1413	n:800000
Cons ci ratio: 3.558809e-03	ci left: 6.015654e-01	ci right 6.037113e-01	k: 482111	n:800000
KS ci ratio: 1.303757e-01	ci left: 1.055148e-03	ci right 1.203502e-03	k: 902	n:800000
CLEC4D   800000 perm   411 sec   (1948 perm/sec)   p_kst 1.127500e-03   p_cons 6.026388e-01   p_joint 1.766250e-03

Joint ci ratio: 1.035338e-01	ci left: 1.675180e-03	ci right 1.859277e-03	k: 1430	n:810000
Cons ci ratio: 3.536932e-03	ci left: 6.015506e-01	ci right 6.036832e-01	k: 488120	n:810000
KS ci ratio: 1.294471e-01	ci left: 1.057650e-03	ci right 1.205215e-03	k: 915	n:810000
CLEC4D   810000 perm   419 sec   (1932 perm/sec)   p_kst 1.129630e-03   p_cons 6.026173e-01   p_joint 1.765432e-03

Joint ci ratio: 1.031027e-01	ci left: 1.669006e-03	ci right 1.851615e-03	k: 1442	n:820000
Cons ci ratio: 3.515345e-03	ci left: 6.015508e-01	ci right 6.036704e-01	k: 494141	n:820000
KS ci ratio: 1.290256e-01	ci left: 1.051832e-03	ci right 1.198071e-03	k: 921	n:820000
CLEC4D   820000 perm   428 sec   (1916 perm/sec)   p_kst 1.123171e-03   p_cons 6.026110e-01   p_joint 1.758537e-03

Joint ci ratio: 9.469781e-02	ci left: 1.962655e-03	ci right 2.158918e-03	k: 1709	n:830000
Cons ci ratio: 3.494457e-03	ci left: 6.015089e-01	ci right 6.036157e-01	k: 500127	n:830000
KS ci ratio: 1.281941e-01	ci left: 1.053152e-03	ci right 1.198559e-03	k: 933	n:830000
CLEC4D   830000 perm   437 sec   (1901 perm/sec)   p_kst 1.124096e-03   p_cons 6.025627e-01   p_joint 2.059036e-03

Joint ci ratio: 9.398569e-02	ci left: 1.969513e-03	ci right 2.164899e-03	k: 1735	n:840000
Cons ci ratio: 3.473488e-03	ci left: 6.015299e-01	ci right 6.036241e-01	k: 506165	n:840000
KS ci ratio: 1.273783e-01	ci left: 1.054443e-03	ci right 1.199032e-03	k: 945	n:840000
CLEC4D   840000 perm   446 sec   (1885 perm/sec)   p_kst 1.125000e-03   p_cons 6.025774e-01   p_joint 2.065476e-03

Joint ci ratio: 1.011246e-01	ci left: 1.675447e-03	ci right 1.855035e-03	k: 1499	n:850000
Cons ci ratio: 3.452204e-03	ci left: 6.016458e-01	ci right 6.037276e-01	k: 512284	n:850000
KS ci ratio: 1.267769e-01	ci left: 1.052290e-03	ci right 1.195851e-03	k: 954	n:850000
CLEC4D   850000 perm   455 sec   (1870 perm/sec)   p_kst 1.122353e-03   p_cons 6.026871e-01   p_joint 1.763529e-03

Joint ci ratio: 1.007228e-01	ci left: 1.669566e-03	ci right 1.847770e-03	k: 1511	n:860000
Cons ci ratio: 3.431949e-03	ci left: 6.016695e-01	ci right 6.037391e-01	k: 518326	n:860000
KS ci ratio: 1.262494e-01	ci left: 1.049062e-03	ci right 1.191542e-03	k: 962	n:860000
CLEC4D   860000 perm   464 sec   (1855 perm/sec)   p_kst 1.118605e-03   p_cons 6.027047e-01   p_joint 1.756977e-03

Joint ci ratio: 1.000630e-01	ci left: 1.672787e-03	ci right 1.850097e-03	k: 1531	n:870000
Cons ci ratio: 3.412086e-03	ci left: 6.016869e-01	ci right 6.037446e-01	k: 524363	n:870000
KS ci ratio: 1.254057e-01	ci left: 1.051476e-03	ci right 1.193259e-03	k: 975	n:870000
CLEC4D   870000 perm   473 sec   (1841 perm/sec)   p_kst 1.120690e-03   p_cons 6.027161e-01   p_joint 1.759770e-03

Joint ci ratio: 9.951248e-02	ci left: 1.672614e-03	ci right 1.848873e-03	k: 1548	n:880000
Cons ci ratio: 3.391993e-03	ci left: 6.017847e-01	ci right 6.038305e-01	k: 530471	n:880000
KS ci ratio: 1.247682e-01	ci left: 1.050535e-03	ci right 1.191418e-03	k: 985	n:880000
CLEC4D   880000 perm   482 sec   (1827 perm/sec)   p_kst 1.119318e-03   p_cons 6.028080e-01   p_joint 1.759091e-03

Joint ci ratio: 9.878151e-02	ci left: 1.679023e-03	ci right 1.854582e-03	k: 1571	n:890000
Cons ci ratio: 3.372560e-03	ci left: 6.018365e-01	ci right 6.038707e-01	k: 536540	n:890000
KS ci ratio: 1.237677e-01	ci left: 1.056150e-03	ci right 1.196567e-03	k: 1001	n:890000
CLEC4D   890000 perm   491 sec   (1813 perm/sec)   p_kst 1.124719e-03   p_cons 6.028539e-01   p_joint 1.765169e-03

Joint ci ratio: 9.818983e-02	ci left: 1.680958e-03	ci right 1.855607e-03	k: 1590	n:900000
Cons ci ratio: 3.353907e-03	ci left: 6.018227e-01	ci right 6.038456e-01	k: 542551	n:900000
KS ci ratio: 1.231548e-01	ci left: 1.055183e-03	ci right 1.194726e-03	k: 1011	n:900000
CLEC4D   900000 perm   500 sec   (1799 perm/sec)   p_kst 1.123333e-03   p_cons 6.028344e-01   p_joint 1.766667e-03

Joint ci ratio: 9.776085e-02	ci left: 1.677494e-03	ci right 1.850977e-03	k: 1604	n:910000
Cons ci ratio: 3.335270e-03	ci left: 6.018509e-01	ci right 6.038627e-01	k: 548600	n:910000
KS ci ratio: 1.225509e-01	ci left: 1.054239e-03	ci right 1.192924e-03	k: 1021	n:910000
CLEC4D   910000 perm   510 sec   (1785 perm/sec)   p_kst 1.121978e-03   p_cons 6.028571e-01   p_joint 1.762637e-03

Joint ci ratio: 9.715726e-02	ci left: 1.680469e-03	ci right 1.853127e-03	k: 1624	n:920000
Cons ci ratio: 3.317181e-03	ci left: 6.018438e-01	ci right 6.038446e-01	k: 554617	n:920000
KS ci ratio: 1.218376e-01	ci left: 1.055425e-03	ci right 1.193399e-03	k: 1033	n:920000
CLEC4D   920000 perm   519 sec   (1772 perm/sec)   p_kst 1.122826e-03   p_cons 6.028446e-01   p_joint 1.765217e-03

Joint ci ratio: 9.656471e-02	ci left: 1.683384e-03	ci right 1.855227e-03	k: 1644	n:930000
Cons ci ratio: 3.299325e-03	ci left: 6.018455e-01	ci right 6.038355e-01	k: 560642	n:930000
KS ci ratio: 1.209055e-01	ci left: 1.060758e-03	ci right 1.198293e-03	k: 1049	n:930000
CLEC4D   930000 perm   529 sec   (1759 perm/sec)   p_kst 1.127957e-03   p_cons 6.028409e-01   p_joint 1.767742e-03

Joint ci ratio: 9.615659e-02	ci left: 1.680011e-03	ci right 1.850743e-03	k: 1658	n:940000
Cons ci ratio: 3.281833e-03	ci left: 6.018355e-01	ci right 6.038149e-01	k: 566656	n:940000
KS ci ratio: 1.202771e-01	ci left: 1.060823e-03	ci right 1.197600e-03	k: 1060	n:940000
CLEC4D   940000 perm   538 sec   (1746 perm/sec)   p_kst 1.127660e-03   p_cons 6.028255e-01   p_joint 1.763830e-03

Joint ci ratio: 9.581099e-02	ci left: 1.674654e-03	ci right 1.844196e-03	k: 1670	n:950000
Cons ci ratio: 3.264402e-03	ci left: 6.018573e-01	ci right 6.038263e-01	k: 572700	n:950000
KS ci ratio: 1.198264e-01	ci left: 1.057824e-03	ci right 1.193668e-03	k: 1068	n:950000
CLEC4D   950000 perm   548 sec   (1733 perm/sec)   p_kst 1.124211e-03   p_cons 6.028421e-01   p_joint 1.757895e-03

Joint ci ratio: 9.518622e-02	ci left: 1.679580e-03	ci right 1.848449e-03	k: 1692	n:960000
Cons ci ratio: 3.246821e-03	ci left: 6.019412e-01	ci right 6.038998e-01	k: 578804	n:960000
KS ci ratio: 1.191043e-01	ci left: 1.059942e-03	ci right 1.195180e-03	k: 1081	n:960000
CLEC4D   960000 perm   558 sec   (1720 perm/sec)   p_kst 1.126042e-03   p_cons 6.029208e-01   p_joint 1.762500e-03

Joint ci ratio: 9.462880e-02	ci left: 1.682394e-03	ci right 1.850501e-03	k: 1712	n:970000
Cons ci ratio: 3.229702e-03	ci left: 6.019966e-01	ci right 6.039450e-01	k: 584882	n:970000
KS ci ratio: 1.183950e-01	ci left: 1.062019e-03	ci right 1.196658e-03	k: 1094	n:970000
CLEC4D   970000 perm   568 sec   (1708 perm/sec)   p_kst 1.127835e-03   p_cons 6.029711e-01   p_joint 1.764948e-03

Joint ci ratio: 8.728055e-02	ci left: 1.964409e-03	ci right 2.144677e-03	k: 2012	n:980000
Cons ci ratio: 3.213194e-03	ci left: 6.019999e-01	ci right 6.039383e-01	k: 590910	n:980000
KS ci ratio: 1.179116e-01	ci left: 1.060094e-03	ci right 1.193903e-03	k: 1103	n:980000
CLEC4D   980000 perm   578 sec   (1695 perm/sec)   p_kst 1.125510e-03   p_cons 6.029694e-01   p_joint 2.053061e-03

Joint ci ratio: 9.359623e-02	ci left: 1.685886e-03	ci right 1.852404e-03	k: 1750	n:990000
Cons ci ratio: 3.196868e-03	ci left: 6.020132e-01	ci right 6.039418e-01	k: 596948	n:990000
KS ci ratio: 1.170138e-01	ci left: 1.066054e-03	ci right 1.199519e-03	k: 1120	n:990000
CLEC4D   990000 perm   588 sec   (1684 perm/sec)   p_kst 1.131313e-03   p_cons 6.029778e-01   p_joint 1.767677e-03

Joint ci ratio: 9.325093e-02	ci left: 1.681724e-03	ci right 1.847184e-03	k: 1763	n:1000000
Cons ci ratio: 3.181161e-03	ci left: 6.019702e-01	ci right 6.038892e-01	k: 602930	n:1000000
KS ci ratio: 1.165987e-01	ci left: 1.063159e-03	ci right 1.195757e-03	k: 1128	n:1000000
CLEC4D   1000000 perm   598 sec   (1672 perm/sec)   p_kst 1.128000e-03   p_cons 6.029300e-01   p_joint 1.763000e-03

Joint ci ratio: 9.275269e-02	ci left: 1.683447e-03	ci right 1.848144e-03	k: 1782	n:1010000
Cons ci ratio: 3.165670e-03	ci left: 6.019301e-01	ci right 6.038396e-01	k: 608914	n:1010000
KS ci ratio: 1.158315e-01	ci left: 1.067053e-03	ci right 1.199201e-03	k: 1143	n:1010000
CLEC4D   1010000 perm   609 sec   (1659 perm/sec)   p_kst 1.131683e-03   p_cons 6.028851e-01   p_joint 1.764356e-03

Joint ci ratio: 9.233938e-02	ci left: 1.682266e-03	ci right 1.846074e-03	k: 1798	n:1020000
Cons ci ratio: 3.150120e-03	ci left: 6.019340e-01	ci right 6.038341e-01	k: 614942	n:1020000
KS ci ratio: 1.153286e-01	ci left: 1.066112e-03	ci right 1.197531e-03	k: 1153	n:1020000
CLEC4D   1020000 perm   619 sec   (1647 perm/sec)   p_kst 1.130392e-03   p_cons 6.028843e-01   p_joint 1.762745e-03

Joint ci ratio: 9.195693e-02	ci left: 1.680161e-03	ci right 1.843050e-03	k: 1813	n:1030000
Cons ci ratio: 3.134891e-03	ci left: 6.019232e-01	ci right 6.038141e-01	k: 620955	n:1030000
KS ci ratio: 1.148322e-01	ci left: 1.065191e-03	ci right 1.195893e-03	k: 1163	n:1030000
CLEC4D   1030000 perm   630 sec   (1635 perm/sec)   p_kst 1.129126e-03   p_cons 6.028689e-01   p_joint 1.760194e-03

Joint ci ratio: 9.160428e-02	ci left: 1.677158e-03	ci right 1.839099e-03	k: 1827	n:1040000
Cons ci ratio: 3.119731e-03	ci left: 6.019358e-01	ci right 6.038175e-01	k: 626992	n:1040000
KS ci ratio: 1.144887e-01	ci left: 1.061486e-03	ci right 1.191318e-03	k: 1170	n:1040000
CLEC4D   1040000 perm   640 sec   (1624 perm/sec)   p_kst 1.125000e-03   p_cons 6.028769e-01   p_joint 1.756731e-03

Joint ci ratio: 9.115656e-02	ci left: 1.677936e-03	ci right 1.839118e-03	k: 1845	n:1050000
Cons ci ratio: 3.103949e-03	ci left: 6.020777e-01	ci right 6.039503e-01	k: 633165	n:1050000
KS ci ratio: 1.137622e-01	ci left: 1.065255e-03	ci right 1.194665e-03	k: 1185	n:1050000
CLEC4D   1050000 perm   651 sec   (1612 perm/sec)   p_kst 1.128571e-03   p_cons 6.030143e-01   p_joint 1.757143e-03

Joint ci ratio: 9.081300e-02	ci left: 1.675013e-03	ci right 1.835276e-03	k: 1859	n:1060000
Cons ci ratio: 3.089286e-03	ci left: 6.020801e-01	ci right 6.039439e-01	k: 639193	n:1060000
KS ci ratio: 1.133807e-01	ci left: 1.062538e-03	ci right 1.191156e-03	k: 1193	n:1060000
CLEC4D   1060000 perm   662 sec   (1601 perm/sec)   p_kst 1.125472e-03   p_cons 6.030123e-01   p_joint 1.753774e-03

Joint ci ratio: 9.023245e-02	ci left: 1.681281e-03	ci right 1.841061e-03	k: 1883	n:1070000
Cons ci ratio: 3.075045e-03	ci left: 6.020488e-01	ci right 6.039039e-01	k: 645185	n:1070000
KS ci ratio: 1.128151e-01	ci left: 1.063505e-03	ci right 1.191556e-03	k: 1205	n:1070000
CLEC4D   1070000 perm   673 sec   (1590 perm/sec)   p_kst 1.126168e-03   p_cons 6.029766e-01   p_joint 1.759813e-03

Joint ci ratio: 8.985179e-02	ci left: 1.680195e-03	ci right 1.839163e-03	k: 1899	n:1080000
Cons ci ratio: 3.060934e-03	ci left: 6.020283e-01	ci right 6.038748e-01	k: 651188	n:1080000
KS ci ratio: 1.123504e-01	ci left: 1.062657e-03	ci right 1.190043e-03	k: 1215	n:1080000
CLEC4D   1080000 perm   684 sec   (1579 perm/sec)   p_kst 1.125000e-03   p_cons 6.029519e-01   p_joint 1.758333e-03

Joint ci ratio: 8.949930e-02	ci left: 1.678233e-03	ci right 1.836360e-03	k: 1914	n:1090000
Cons ci ratio: 3.046759e-03	ci left: 6.020486e-01	ci right 6.038866e-01	k: 657235	n:1090000
KS ci ratio: 1.119828e-01	ci left: 1.060041e-03	ci right 1.186671e-03	k: 1223	n:1090000
CLEC4D   1090000 perm   695 sec   (1568 perm/sec)   p_kst 1.122018e-03   p_cons 6.029679e-01   p_joint 1.755963e-03

Joint ci ratio: 8.272221e-02	ci left: 1.952979e-03	ci right 2.122387e-03	k: 2240	n:1100000
Cons ci ratio: 3.032888e-03	ci left: 6.020513e-01	ci right 6.038809e-01	k: 663263	n:1100000
KS ci ratio: 1.116641e-01	ci left: 1.056590e-03	ci right 1.182424e-03	k: 1230	n:1100000
CLEC4D   1100000 perm   706 sec   (1558 perm/sec)   p_kst 1.118182e-03   p_cons 6.029664e-01   p_joint 2.036364e-03

Joint ci ratio: 8.248358e-02	ci left: 1.946854e-03	ci right 2.115221e-03	k: 2253	n:1110000
Cons ci ratio: 3.019143e-03	ci left: 6.020638e-01	ci right 6.038852e-01	k: 669302	n:1110000
KS ci ratio: 1.113032e-01	ci left: 1.054077e-03	ci right 1.179180e-03	k: 1238	n:1110000
CLEC4D   1110000 perm   717 sec   (1547 perm/sec)   p_kst 1.115315e-03   p_cons 6.029748e-01   p_joint 2.029730e-03

Joint ci ratio: 8.851147e-02	ci left: 1.670819e-03	ci right 1.826419e-03	k: 1957	n:1120000
Cons ci ratio: 3.005588e-03	ci left: 6.020753e-01	ci right 6.038885e-01	k: 675340	n:1120000
KS ci ratio: 1.109013e-01	ci left: 1.052478e-03	ci right 1.176911e-03	k: 1247	n:1120000
CLEC4D   1120000 perm   729 sec   (1537 perm/sec)   p_kst 1.113393e-03   p_cons 6.029821e-01   p_joint 1.747321e-03

Joint ci ratio: 8.819686e-02	ci left: 1.668148e-03	ci right 1.822919e-03	k: 1971	n:1130000
Cons ci ratio: 2.992004e-03	ci left: 6.021202e-01	ci right 6.039253e-01	k: 681416	n:1130000
KS ci ratio: 1.105036e-01	ci left: 1.050908e-03	ci right 1.174681e-03	k: 1256	n:1130000
CLEC4D   1130000 perm   740 sec   (1527 perm/sec)   p_kst 1.111504e-03   p_cons 6.030230e-01   p_joint 1.744248e-03

Joint ci ratio: 8.790776e-02	ci left: 1.664668e-03	ci right 1.818583e-03	k: 1984	n:1140000
Cons ci ratio: 2.978995e-03	ci left: 6.021011e-01	ci right 6.038983e-01	k: 687420	n:1140000
KS ci ratio: 1.101102e-01	ci left: 1.049366e-03	ci right 1.172489e-03	k: 1265	n:1140000
CLEC4D   1140000 perm   752 sec   (1517 perm/sec)   p_kst 1.109649e-03   p_cons 6.030000e-01   p_joint 1.740351e-03

Joint ci ratio: 8.764344e-02	ci left: 1.660398e-03	ci right 1.813434e-03	k: 1996	n:1150000
Cons ci ratio: 2.965525e-03	ci left: 6.021842e-01	ci right 6.039735e-01	k: 693541	n:1150000
KS ci ratio: 1.097641e-01	ci left: 1.047007e-03	ci right 1.169441e-03	k: 1273	n:1150000
CLEC4D   1150000 perm   763 sec   (1507 perm/sec)   p_kst 1.106957e-03   p_cons 6.030791e-01   p_joint 1.735652e-03

Joint ci ratio: 8.709966e-02	ci left: 1.667165e-03	ci right 1.819823e-03	k: 2021	n:1160000
Cons ci ratio: 2.952538e-03	ci left: 6.022167e-01	ci right 6.039983e-01	k: 699605	n:1160000
KS ci ratio: 1.090388e-01	ci left: 1.052235e-03	ci right 1.174416e-03	k: 1290	n:1160000
CLEC4D   1160000 perm   775 sec   (1497 perm/sec)   p_kst 1.112069e-03   p_cons 6.031078e-01   p_joint 1.742241e-03

Joint ci ratio: 8.667198e-02	ci left: 1.669639e-03	ci right 1.821734e-03	k: 2041	n:1170000
Cons ci ratio: 2.939847e-03	ci left: 6.022282e-01	ci right 6.040021e-01	k: 705645	n:1170000
KS ci ratio: 1.083276e-01	ci left: 1.057377e-03	ci right 1.179303e-03	k: 1307	n:1170000
CLEC4D   1170000 perm   787 sec   (1487 perm/sec)   p_kst 1.117094e-03   p_cons 6.031154e-01   p_joint 1.744444e-03

Joint ci ratio: 7.991853e-02	ci left: 1.953410e-03	ci right 2.116846e-03	k: 2400	n:1180000
Cons ci ratio: 2.927136e-03	ci left: 6.022691e-01	ci right 6.040355e-01	k: 711720	n:1180000
KS ci ratio: 1.078750e-01	ci left: 1.057486e-03	ci right 1.178882e-03	k: 1318	n:1180000
CLEC4D   1180000 perm   798 sec   (1478 perm/sec)   p_kst 1.116949e-03   p_cons 6.031525e-01   p_joint 2.033898e-03

Joint ci ratio: 7.952196e-02	ci left: 1.956761e-03	ci right 2.119627e-03	k: 2424	n:1190000
Cons ci ratio: 2.914696e-03	ci left: 6.022917e-01	ci right 6.040506e-01	k: 717774	n:1190000
KS ci ratio: 1.073068e-01	ci left: 1.060048e-03	ci right 1.181057e-03	k: 1332	n:1190000
CLEC4D   1190000 perm   810 sec   (1469 perm/sec)   p_kst 1.119328e-03   p_cons 6.031714e-01   p_joint 2.036975e-03

Joint ci ratio: 7.917983e-02	ci left: 1.957608e-03	ci right 2.119811e-03	k: 2445	n:1200000
Cons ci ratio: 2.902297e-03	ci left: 6.023332e-01	ci right 6.040847e-01	k: 723851	n:1200000
KS ci ratio: 1.067873e-01	ci left: 1.061757e-03	ci right 1.182338e-03	k: 1345	n:1200000
CLEC4D   1200000 perm   823 sec   (1459 perm/sec)   p_kst 1.120833e-03   p_cons 6.032092e-01   p_joint 2.037500e-03

Joint ci ratio: 7.890622e-02	ci left: 1.955201e-03	ci right 2.116619e-03	k: 2462	n:1210000
Cons ci ratio: 2.890220e-03	ci left: 6.023466e-01	ci right 6.040909e-01	k: 729895	n:1210000
KS ci ratio: 1.063144e-01	ci left: 1.062636e-03	ci right 1.182748e-03	k: 1357	n:1210000
CLEC4D   1210000 perm   834 sec   (1450 perm/sec)   p_kst 1.121488e-03   p_cons 6.032190e-01   p_joint 2.034711e-03

Joint ci ratio: 7.861953e-02	ci left: 1.953638e-03	ci right 2.114314e-03	k: 2480	n:1220000
Cons ci ratio: 2.878366e-03	ci left: 6.023476e-01	ci right 6.040847e-01	k: 735924	n:1220000
KS ci ratio: 1.058864e-01	ci left: 1.062703e-03	ci right 1.182309e-03	k: 1368	n:1220000
CLEC4D   1220000 perm   847 sec   (1441 perm/sec)   p_kst 1.121311e-03   p_cons 6.032164e-01   p_joint 2.032787e-03

Joint ci ratio: 7.819499e-02	ci left: 1.959276e-03	ci right 2.119506e-03	k: 2507	n:1230000
Cons ci ratio: 2.866701e-03	ci left: 6.023413e-01	ci right 6.040713e-01	k: 741944	n:1230000
KS ci ratio: 1.052348e-01	ci left: 1.067519e-03	ci right 1.186883e-03	k: 1385	n:1230000
CLEC4D   1230000 perm   859 sec   (1432 perm/sec)   p_kst 1.126016e-03   p_cons 6.032065e-01   p_joint 2.038211e-03

Joint ci ratio: 7.790051e-02	ci left: 1.958499e-03	ci right 2.118035e-03	k: 2526	n:1240000
Cons ci ratio: 2.855263e-03	ci left: 6.023205e-01	ci right 6.040435e-01	k: 747946	n:1240000
KS ci ratio: 1.047072e-01	ci left: 1.069904e-03	ci right 1.188897e-03	k: 1399	n:1240000
CLEC4D   1240000 perm   871 sec   (1424 perm/sec)   p_kst 1.128226e-03   p_cons 6.031823e-01   p_joint 2.037097e-03

Joint ci ratio: 7.759407e-02	ci left: 1.958520e-03	ci right 2.117402e-03	k: 2546	n:1250000
Cons ci ratio: 2.843794e-03	ci left: 6.023281e-01	ci right 6.040442e-01	k: 753983	n:1250000
KS ci ratio: 1.042983e-01	ci left: 1.069915e-03	ci right 1.188416e-03	k: 1410	n:1250000
CLEC4D   1250000 perm   883 sec   (1415 perm/sec)   p_kst 1.128000e-03   p_cons 6.031864e-01   p_joint 2.036800e-03

Joint ci ratio: 7.736675e-02	ci left: 1.954650e-03	ci right 2.112732e-03	k: 2561	n:1260000
Cons ci ratio: 2.832580e-03	ci left: 6.023158e-01	ci right 6.040250e-01	k: 759995	n:1260000
KS ci ratio: 1.039307e-01	ci left: 1.069153e-03	ci right 1.187127e-03	k: 1420	n:1260000
CLEC4D   1260000 perm   896 sec   (1407 perm/sec)   p_kst 1.126984e-03   p_cons 6.031706e-01   p_joint 2.032540e-03

Joint ci ratio: 7.708150e-02	ci left: 1.953931e-03	ci right 2.111346e-03	k: 2580	n:1270000
Cons ci ratio: 2.821447e-03	ci left: 6.023123e-01	ci right 6.040148e-01	k: 766018	n:1270000
KS ci ratio: 1.035670e-01	ci left: 1.068404e-03	ci right 1.185858e-03	k: 1430	n:1270000
CLEC4D   1270000 perm   908 sec   (1399 perm/sec)   p_kst 1.125984e-03   p_cons 6.031638e-01   p_joint 2.031496e-03

Joint ci ratio: 7.694780e-02	ci left: 1.945561e-03	ci right 2.102018e-03	k: 2589	n:1280000
Cons ci ratio: 2.810205e-03	ci left: 6.023495e-01	ci right 6.040454e-01	k: 772093	n:1280000
KS ci ratio: 1.034228e-01	ci left: 1.063101e-03	ci right 1.179800e-03	k: 1434	n:1280000
CLEC4D   1280000 perm   921 sec   (1390 perm/sec)   p_kst 1.120312e-03   p_cons 6.031977e-01   p_joint 2.022656e-03

Joint ci ratio: 7.669660e-02	ci left: 1.943404e-03	ci right 2.099155e-03	k: 2606	n:1290000
Cons ci ratio: 2.799387e-03	ci left: 6.023365e-01	ci right 6.040258e-01	k: 778104	n:1290000
KS ci ratio: 1.031717e-01	ci left: 1.060146e-03	ci right 1.176221e-03	k: 1441	n:1290000
CLEC4D   1290000 perm   933 sec   (1382 perm/sec)   p_kst 1.117054e-03   p_cons 6.031814e-01   p_joint 2.020155e-03

Joint ci ratio: 7.650630e-02	ci left: 1.938263e-03	ci right 2.093199e-03	k: 2619	n:1300000
Cons ci ratio: 2.788540e-03	ci left: 6.023499e-01	ci right 6.040327e-01	k: 784149	n:1300000
KS ci ratio: 1.029579e-01	ci left: 1.056488e-03	ci right 1.171907e-03	k: 1447	n:1300000
CLEC4D   1300000 perm   946 sec   (1374 perm/sec)   p_kst 1.113077e-03   p_cons 6.031915e-01   p_joint 2.014615e-03

Joint ci ratio: 7.601426e-02	ci left: 1.948927e-03	ci right 2.103669e-03	k: 2653	n:1310000
Cons ci ratio: 2.777730e-03	ci left: 6.023784e-01	ci right 6.040547e-01	k: 790214	n:1310000
KS ci ratio: 1.023585e-01	ci left: 1.061067e-03	ci right 1.176271e-03	k: 1464	n:1310000
CLEC4D   1310000 perm   959 sec   (1366 perm/sec)   p_kst 1.117557e-03   p_cons 6.032168e-01   p_joint 2.025191e-03

Joint ci ratio: 7.575786e-02	ci left: 1.947540e-03	ci right 2.101628e-03	k: 2671	n:1320000
Cons ci ratio: 2.766974e-03	ci left: 6.024186e-01	ci right 6.040885e-01	k: 796295	n:1320000
KS ci ratio: 1.019764e-01	ci left: 1.061149e-03	ci right 1.175906e-03	k: 1475	n:1320000
CLEC4D   1320000 perm   972 sec   (1358 perm/sec)   p_kst 1.117424e-03   p_cons 6.032538e-01   p_joint 2.023485e-03

Joint ci ratio: 8.173814e-02	ci left: 1.655739e-03	ci right 1.797573e-03	k: 2295	n:1330000
Cons ci ratio: 2.756594e-03	ci left: 6.024146e-01	ci right 6.040782e-01	k: 802318	n:1330000
KS ci ratio: 1.015644e-01	ci left: 1.061963e-03	ci right 1.176317e-03	k: 1487	n:1330000
CLEC4D   1330000 perm   985 sec   (1351 perm/sec)   p_kst 1.118045e-03   p_cons 6.032466e-01   p_joint 1.725564e-03

Joint ci ratio: 7.525274e-02	ci left: 1.944831e-03	ci right 2.097633e-03	k: 2707	n:1340000
Cons ci ratio: 2.746595e-03	ci left: 6.023643e-01	ci right 6.040218e-01	k: 808279	n:1340000
KS ci ratio: 1.011573e-01	ci left: 1.062766e-03	ci right 1.176721e-03	k: 1499	n:1340000
CLEC4D   1340000 perm   998 sec   (1343 perm/sec)   p_kst 1.118657e-03   p_cons 6.031933e-01   p_joint 2.020149e-03

Joint ci ratio: 7.501773e-02	ci left: 1.942780e-03	ci right 2.094924e-03	k: 2724	n:1350000
Cons ci ratio: 2.736394e-03	ci left: 6.023689e-01	ci right 6.040202e-01	k: 814313	n:1350000
KS ci ratio: 1.009222e-01	ci left: 1.059948e-03	ci right 1.173321e-03	k: 1506	n:1350000
CLEC4D   1350000 perm   1011 sec   (1335 perm/sec)   p_kst 1.115556e-03   p_cons 6.031948e-01   p_joint 2.017778e-03

Joint ci ratio: 7.474394e-02	ci left: 1.942926e-03	ci right 2.094502e-03	k: 2744	n:1360000
Cons ci ratio: 2.726542e-03	ci left: 6.023323e-01	ci right 6.039775e-01	k: 820291	n:1360000
KS ci ratio: 1.004896e-01	ci left: 1.061473e-03	ci right 1.174493e-03	k: 1519	n:1360000
CLEC4D   1360000 perm   1024 sec   (1328 perm/sec)   p_kst 1.116912e-03   p_cons 6.031551e-01   p_joint 2.017647e-03

Joint ci ratio: 7.440576e-02	ci left: 1.946652e-03	ci right 2.097801e-03	k: 2769	n:1370000
Cons ci ratio: 2.716442e-03	ci left: 6.023583e-01	ci right 6.039975e-01	k: 826354	n:1370000
KS ci ratio: 9.999730e-02	ci left: 1.064399e-03	ci right 1.177143e-03	k: 1534	n:1370000
CLEC4D   1370000 perm   1037 sec   (1321 perm/sec)   p_kst 1.119708e-03   p_cons 6.031781e-01   p_joint 2.021168e-03

Outputting figure to mutsig2_images.part000000000039/CLEC4D.2_672_1370000_0.0011197_0.60318_0.0020212.png
                gene_name: CLEC4D
               theta_stop: 0.100 
                    nperm: 1370000 
                     p_ks: 0.0011 
        ci_ks_bounds_left: 0.0011 
       ci_ks_bounds_right: 0.0012 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.0020 
     ci_joint_bounds_left: 0.0019 
    ci_joint_bounds_right: 0.0021 

Current progress: 74 percent done.
CLEC4E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.329282e-01	ci left: 7.465870e-02	ci right 8.538747e-02	k: 799	n:10000
Cons ci ratio: 1.626371e-01	ci left: 5.041952e-02	ci right 5.944196e-02	k: 548	n:10000
KS ci ratio: 9.611774e-02	ci left: 1.357035e-01	ci right 1.495054e-01	k: 1425	n:10000
CLEC4E   10000 perm   1 sec   (7114 perm/sec)   p_kst 1.425000e-01   p_cons 5.480000e-02   p_joint 7.990000e-02

Joint ci ratio: 1.334607e-01	ci left: 3.858415e-02	ci right 4.415019e-02	k: 826	n:20000
Cons ci ratio: 1.145086e-01	ci left: 5.217214e-02	ci right 5.855790e-02	k: 1106	n:20000
KS ci ratio: 6.827406e-02	ci left: 1.366477e-01	ci right 1.463568e-01	k: 2829	n:20000
CLEC4E   20000 perm   3 sec   (6181 perm/sec)   p_kst 1.414500e-01   p_cons 5.530000e-02   p_joint 4.130000e-02

Joint ci ratio: 1.085382e-01	ci left: 3.940081e-02	ci right 4.395516e-02	k: 1249	n:30000
Cons ci ratio: 9.321464e-02	ci left: 5.306606e-02	ci right 5.828707e-02	k: 1669	n:30000
KS ci ratio: 5.609263e-02	ci left: 1.360589e-01	ci right 1.439443e-01	k: 4199	n:30000
CLEC4E   30000 perm   5 sec   (5843 perm/sec)   p_kst 1.399667e-01   p_cons 5.563333e-02   p_joint 4.163333e-02

Joint ci ratio: 6.726915e-02	ci left: 7.561168e-02	ci right 8.089973e-02	k: 3129	n:40000
Cons ci ratio: 7.979470e-02	ci left: 5.462506e-02	ci right 5.918953e-02	k: 2275	n:40000
KS ci ratio: 4.874490e-02	ci left: 1.357720e-01	ci right 1.425804e-01	k: 5566	n:40000
CLEC4E   40000 perm   7 sec   (5628 perm/sec)   p_kst 1.391500e-01   p_cons 5.687500e-02   p_joint 7.822500e-02

Outputting figure to mutsig2_images.part000000000039/CLEC4E.2_684_40000_0.13915_0.056875_0.078225.png
                gene_name: CLEC4E
               theta_stop: 0.080 
                    nperm: 40000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.057 
      ci_cons_bounds_left: 0.055 
     ci_cons_bounds_right: 0.059 
                  p_joint: 0.078 
     ci_joint_bounds_left: 0.076 
    ci_joint_bounds_right: 0.081 

Current progress: 76 percent done.
CLEC4F
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.817418e-02	ci left: 8.154773e-01	ci right 8.305340e-01	k: 8231	n:10000
KS ci ratio: 8.386407e-02	ci left: 1.717274e-01	ci right 1.868599e-01	k: 1792	n:10000
CLEC4F   10000 perm   2 sec   (6506 perm/sec)   p_kst 1.792000e-01   p_cons 8.231000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000039/CLEC4F.2_1798_10000_0.1792_0.8231_1.png
                gene_name: CLEC4F
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
CLEC4M
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.703135e-02	ci left: 6.684392e-01	ci right 6.868572e-01	k: 6777	n:10000
Cons ci ratio: 1.788029e-02	ci left: 8.202549e-01	ci right 8.351537e-01	k: 8278	n:10000
KS ci ratio: 3.360775e-02	ci left: 5.665439e-01	ci right 5.860116e-01	k: 5763	n:10000
CLEC4M   10000 perm   1 sec   (6909 perm/sec)   p_kst 5.763000e-01   p_cons 8.278000e-01   p_joint 6.777000e-01

Outputting figure to mutsig2_images.part000000000039/CLEC4M.2_1249_10000_0.5763_0.8278_0.6777.png
                gene_name: CLEC4M
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 81 percent done.
CLGN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.060242e-02	ci left: 9.267855e-01	ci right 9.367612e-01	k: 9319	n:10000
Cons ci ratio: 2.159387e-01	ci left: 2.844783e-02	ci right 3.542834e-02	k: 318	n:10000
KS ci ratio: 7.667657e-02	ci left: 1.991939e-01	ci right 2.151771e-01	k: 2071	n:10000
CLGN   10000 perm   2 sec   (6164 perm/sec)   p_kst 2.071000e-01   p_cons 3.180000e-02   p_joint 9.319000e-01

Joint ci ratio: 3.350350e-02	ci left: 3.994823e-01	ci right 4.131450e-01	k: 8126	n:20000
Cons ci ratio: 1.533170e-01	ci left: 2.921889e-02	ci right 3.411851e-02	k: 632	n:20000
KS ci ratio: 5.416971e-02	ci left: 2.018483e-01	ci right 2.131369e-01	k: 4149	n:20000
CLGN   20000 perm   4 sec   (5380 perm/sec)   p_kst 2.074500e-01   p_cons 3.160000e-02   p_joint 4.063000e-01

Joint ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
Cons ci ratio: 1.270260e-01	ci left: 2.880916e-02	ci right 3.274907e-02	k: 922	n:30000
KS ci ratio: 4.408661e-02	ci left: 2.039479e-01	ci right 2.131753e-01	k: 6256	n:30000
CLGN   30000 perm   6 sec   (5110 perm/sec)   p_kst 2.085333e-01   p_cons 3.073333e-02   p_joint 1

Joint ci ratio: 9.799510e-05	ci left: 9.999078e-01	ci right 1	k: 40000	n:40000
Cons ci ratio: 1.104099e-01	ci left: 2.886082e-02	ci right 3.225779e-02	k: 1221	n:40000
KS ci ratio: 3.841498e-02	ci left: 2.025668e-01	ci right 2.105258e-01	k: 8261	n:40000
CLGN   40000 perm   8 sec   (4922 perm/sec)   p_kst 2.065250e-01   p_cons 3.052500e-02   p_joint 1

Joint ci ratio: 7.839686e-05	ci left: 9.999262e-01	ci right 1	k: 50000	n:50000
Cons ci ratio: 9.941030e-02	ci left: 2.865872e-02	ci right 3.167616e-02	k: 1507	n:50000
KS ci ratio: 3.444880e-02	ci left: 2.021443e-01	ci right 2.092499e-01	k: 10284	n:50000
CLGN   50000 perm   10 sec   (4782 perm/sec)   p_kst 2.056800e-01   p_cons 3.014000e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000039/CLGN.2_1889_50000_0.20568_0.03014_1.png
                gene_name: CLGN
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.030 
      ci_cons_bounds_left: 0.029 
     ci_cons_bounds_right: 0.032 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
CLIP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.870845e-02	ci left: 8.067404e-01	ci right 8.220760e-01	k: 8145	n:10000
Cons ci ratio: 4.258492e-02	ci left: 4.487971e-01	ci right 4.684270e-01	k: 4586	n:10000
KS ci ratio: 3.325811e-02	ci left: 5.716584e-01	ci right 5.910942e-01	k: 5814	n:10000
CLIP4   10000 perm   2 sec   (5904 perm/sec)   p_kst 5.814000e-01   p_cons 4.586000e-01   p_joint 8.145000e-01

Outputting figure to mutsig2_images.part000000000039/CLIP4.2_2178_10000_0.5814_0.4586_0.8145.png
                gene_name: CLIP4
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 86 percent done.
CLK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.236279e-03	ci left: 9.536741e-01	ci right 9.616565e-01	k: 9578	n:10000
KS ci ratio: 6.307811e-02	ci left: 2.697298e-01	ci right 2.873994e-01	k: 2785	n:10000
CLK2   10000 perm   2 sec   (6357 perm/sec)   p_kst 2.785000e-01   p_cons 9.578000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000039/CLK2.2_1545_10000_0.2785_0.9578_1.png
                gene_name: CLK2
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
CLK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.268333e-01	ci left: 1.861361e-03	ci right 4.044256e-03	k: 28	n:10000
Cons ci ratio: 2.288572e-01	ci left: 2.523219e-02	ci right 3.184628e-02	k: 284	n:10000
KS ci ratio: 2.794182e-01	ci left: 1.660112e-02	ci right 2.208394e-02	k: 192	n:10000
CLK4   10000 perm   2 sec   (6448 perm/sec)   p_kst 1.920000e-02   p_cons 2.840000e-02   p_joint 2.800000e-03

Joint ci ratio: 2.737235e-01	ci left: 8.760815e-03	ci right 1.158433e-02	k: 202	n:20000
Cons ci ratio: 1.588432e-01	ci left: 2.719860e-02	ci right 3.193948e-02	k: 590	n:20000
KS ci ratio: 1.942734e-01	ci left: 1.800953e-02	ci right 2.193178e-02	k: 398	n:20000
CLK4   20000 perm   4 sec   (5642 perm/sec)   p_kst 1.990000e-02   p_cons 2.950000e-02   p_joint 1.010000e-02

Joint ci ratio: 1.368183e-01	ci left: 2.480844e-02	ci right 2.848400e-02	k: 798	n:30000
Cons ci ratio: 1.297337e-01	ci left: 2.761432e-02	ci right 3.147750e-02	k: 885	n:30000
KS ci ratio: 1.559217e-01	ci left: 1.902257e-02	ci right 2.227119e-02	k: 618	n:30000
CLK4   30000 perm   6 sec   (5326 perm/sec)   p_kst 2.060000e-02   p_cons 2.950000e-02   p_joint 2.660000e-02

Joint ci ratio: 8.185504e-02	ci left: 5.200113e-02	ci right 5.646386e-02	k: 2168	n:40000
Cons ci ratio: 1.125168e-01	ci left: 2.779061e-02	ci right 3.112816e-02	k: 1177	n:40000
KS ci ratio: 1.341502e-01	ci left: 1.949632e-02	ci right 2.232383e-02	k: 835	n:40000
CLK4   40000 perm   8 sec   (5131 perm/sec)   p_kst 2.087500e-02   p_cons 2.942500e-02   p_joint 5.420000e-02

Joint ci ratio: 7.453438e-02	ci left: 5.046285e-02	ci right 5.438931e-02	k: 2620	n:50000
Cons ci ratio: 1.022781e-01	ci left: 2.707842e-02	ci right 3.001665e-02	k: 1426	n:50000
KS ci ratio: 1.206380e-01	ci left: 1.943109e-02	ci right 2.194499e-02	k: 1033	n:50000
CLK4   50000 perm   10 sec   (4981 perm/sec)   p_kst 2.066000e-02   p_cons 2.852000e-02   p_joint 5.240000e-02

Joint ci ratio: 5.892918e-02	ci left: 6.665575e-02	ci right 7.071942e-02	k: 4120	n:60000
Cons ci ratio: 9.380188e-02	ci left: 2.695507e-02	ci right 2.962415e-02	k: 1696	n:60000
KS ci ratio: 1.107116e-01	ci left: 1.933242e-02	ci right 2.161429e-02	k: 1227	n:60000
CLK4   60000 perm   12 sec   (4846 perm/sec)   p_kst 2.045000e-02   p_cons 2.826667e-02   p_joint 6.866667e-02

Joint ci ratio: 6.350069e-02	ci left: 4.998676e-02	ci right 5.327910e-02	k: 3613	n:70000
Cons ci ratio: 8.729477e-02	ci left: 2.677636e-02	ci right 2.923441e-02	k: 1959	n:70000
KS ci ratio: 1.019076e-01	ci left: 1.964410e-02	ci right 2.176732e-02	k: 1448	n:70000
CLK4   70000 perm   15 sec   (4729 perm/sec)   p_kst 2.068571e-02   p_cons 2.798571e-02   p_joint 5.161429e-02

Joint ci ratio: 4.755024e-02	ci left: 7.643513e-02	ci right 8.017051e-02	k: 6263	n:80000
Cons ci ratio: 8.132132e-02	ci left: 2.707600e-02	ci right 2.938339e-02	k: 2257	n:80000
KS ci ratio: 9.529658e-02	ci left: 1.972455e-02	ci right 2.171042e-02	k: 1656	n:80000
CLK4   80000 perm   17 sec   (4619 perm/sec)   p_kst 2.070000e-02   p_cons 2.821250e-02   p_joint 7.828750e-02

Outputting figure to mutsig2_images.part000000000039/CLK4.2_1494_80000_0.0207_0.028213_0.078287.png
                gene_name: CLK4
               theta_stop: 0.095 
                    nperm: 80000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.022 
                   p_cons: 0.028 
      ci_cons_bounds_left: 0.027 
     ci_cons_bounds_right: 0.029 
                  p_joint: 0.078 
     ci_joint_bounds_left: 0.076 
    ci_joint_bounds_right: 0.080 

Current progress: 90 percent done.
CLPB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.840551e-02	ci left: 1.569877e-01	ci right 1.716084e-01	k: 1642	n:10000
Cons ci ratio: 9.187494e-02	ci left: 1.468790e-01	ci right 1.611232e-01	k: 1539	n:10000
KS ci ratio: 6.406538e-02	ci left: 2.635927e-01	ci right 2.811401e-01	k: 2723	n:10000
CLPB   10000 perm   2 sec   (6032 perm/sec)   p_kst 2.723000e-01   p_cons 1.539000e-01   p_joint 1.642000e-01

Outputting figure to mutsig2_images.part000000000039/CLPB.2_2192_10000_0.2723_0.1539_0.1642.png
                gene_name: CLPB
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 93 percent done.
CLPTM1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.729973e-01	ci left: 1.743979e-02	ci right 2.304459e-02	k: 201	n:10000
Cons ci ratio: 3.113784e-01	ci left: 1.317075e-02	ci right 1.811726e-02	k: 155	n:10000
KS ci ratio: 1.985145e-02	ci left: 7.878649e-01	ci right 8.037624e-01	k: 7959	n:10000
CLPTM1L   10000 perm   2 sec   (6298 perm/sec)   p_kst 7.959000e-01   p_cons 1.550000e-02   p_joint 2.010000e-02

Joint ci ratio: 2.216308e-01	ci left: 1.369190e-02	ci right 1.715108e-02	k: 307	n:20000
Cons ci ratio: 2.261475e-01	ci left: 1.312511e-02	ci right 1.651809e-02	k: 295	n:20000
KS ci ratio: 1.392015e-02	ci left: 7.929737e-01	ci right 8.041394e-01	k: 15972	n:20000
CLPTM1L   20000 perm   4 sec   (5523 perm/sec)   p_kst 7.986000e-01   p_cons 1.475000e-02   p_joint 1.535000e-02

Joint ci ratio: 1.778596e-01	ci left: 1.451487e-02	ci right 1.737998e-02	k: 477	n:30000
Cons ci ratio: 1.813614e-01	ci left: 1.394148e-02	ci right 1.675352e-02	k: 459	n:30000
KS ci ratio: 1.135862e-02	ci left: 7.942180e-01	ci right 8.033241e-01	k: 23964	n:30000
CLPTM1L   30000 perm   6 sec   (5217 perm/sec)   p_kst 7.988000e-01   p_cons 1.530000e-02   p_joint 1.590000e-02

Joint ci ratio: 7.795902e-02	ci left: 5.712769e-02	ci right 6.178652e-02	k: 2377	n:40000
Cons ci ratio: 7.656511e-02	ci left: 5.914048e-02	ci right 6.387342e-02	k: 2459	n:40000
KS ci ratio: 9.790139e-03	ci left: 7.963732e-01	ci right 8.042331e-01	k: 32013	n:40000
CLPTM1L   40000 perm   8 sec   (5034 perm/sec)   p_kst 8.003250e-01   p_cons 6.147500e-02   p_joint 5.942500e-02

Outputting figure to mutsig2_images.part000000000039/CLPTM1L.2_1685_40000_0.80032_0.061475_0.059425.png
                gene_name: CLPTM1L
               theta_stop: 0.078 
                    nperm: 40000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.061 
      ci_cons_bounds_left: 0.059 
     ci_cons_bounds_right: 0.064 
                  p_joint: 0.059 
     ci_joint_bounds_left: 0.057 
    ci_joint_bounds_right: 0.062 

Current progress: 95 percent done.
CLSTN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.474977e-02	ci left: 5.501045e-01	ci right 5.696606e-01	k: 5599	n:10000
Cons ci ratio: 5.811568e-02	ci left: 3.035202e-01	ci right 3.217891e-01	k: 3126	n:10000
KS ci ratio: 4.662879e-02	ci left: 4.043224e-01	ci right 4.237277e-01	k: 4140	n:10000
CLSTN3   10000 perm   2 sec   (5550 perm/sec)   p_kst 4.140000e-01   p_cons 3.126000e-01   p_joint 5.599000e-01

Outputting figure to mutsig2_images.part000000000039/CLSTN3.2_2943_10000_0.414_0.3126_0.5599.png
                gene_name: CLSTN3
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 98 percent done.
CLTCL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.418105e-03	ci left: 9.408695e-01	ci right 9.498689e-01	k: 9455	n:10000
Cons ci ratio: 7.254263e-02	ci left: 2.177347e-01	ci right 2.342252e-01	k: 2259	n:10000
KS ci ratio: 2.980043e-02	ci left: 6.241692e-01	ci right 6.431529e-01	k: 6337	n:10000
CLTCL1   10000 perm   2 sec   (4655 perm/sec)   p_kst 6.337000e-01   p_cons 2.259000e-01   p_joint 9.455000e-01

Outputting figure to mutsig2_images.part000000000039/CLTCL1.2_5051_10000_0.6337_0.2259_0.9455.png
                gene_name: CLTCL1
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000039
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 39 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1642>
Subject: Job 8003968: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1642>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000040> was used as the working directory.
Started at Sun Nov 11 15:04:50 2012
Results reported at Sun Nov 11 15:37:29 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000040.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000040.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 40  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000040.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   2116.14 sec.
    Max Memory :      4758 MB
    Max Swap   :      7291 MB

    Max Processes  :         7
    Max Threads    :        94

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
40
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 40
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 40: processing genes 3529 - 3619
Calculating significance of each gene.
Using projection method.
3529	CLVS1	1
3530	CLVS2	8.350690e-06
3531	CLYBL	1
3532	CMA1	1.681099e-01
3533	CMAS	3.288088e-01
3534	CMBL	3.695075e-02
3535	CMC1	1
3536	CMIP	5.447597e-01
3537	CMKLR1	7.638408e-01
3538	CMPK1	2.383128e-01
3539	CMPK2	3.624444e-01
3540	CMTM1	1
3541	CMTM2	1
3542	CMTM3	3.949546e-01
3543	CMTM4	3.117753e-01
3544	CMTM5	1
3545	CMTM6	1
3546	CMTM7	3.371909e-01
3547	CMTM8	1
3548	CMYA5	9.999922e-01
3549	CNBD1	3.841686e-03
3550	CNBP	3.024134e-01
3551	CNDP1	3.106537e-01
3552	CNDP2	7.212370e-01
3553	CNFN	3.450265e-01
3554	CNGA1	1
3555	CNGA2	3.893252e-02
3556	CNGA3	3.168926e-01
3557	CNGA4	2.716468e-01
3558	CNGB1	8.313953e-01
3559	CNGB3	3.220577e-02
3560	CNIH	1
3561	CNIH2	2.246245e-01
3562	CNIH3	1.621269e-01
3563	CNIH4	1
3564	CNKSR1	9.039114e-01
3565	CNKSR2	1.532886e-03
3566	CNKSR3	6.824777e-01
3567	CNN1	1.952165e-01
3568	CNN2	1
3569	CNN3	6.375496e-01
3570	CNNM1	4.314925e-01
3571	CNNM2	4.775897e-01
3572	CNNM3	5.904963e-01
3573	CNNM4	1
3574	CNO	8.671926e-02
3575	CNOT1	9.230468e-01
3576	CNOT10	1
3577	CNOT2	5.191642e-01
3578	CNOT3	4.586844e-01
3579	CNOT4	3.607910e-03
3580	CNOT6	4.969714e-01
3581	CNOT6L	3.812585e-01
3582	CNOT7	5.221607e-01
3583	CNOT8	1
3584	CNP	8.167026e-01
3585	CNPY1	2.656838e-02
3586	CNPY2	1
3587	CNPY3	1
3588	CNPY4	6.772384e-01
3589	CNR1	6.790661e-01
3590	CNR2	1
3591	CNRIP1	1
3592	CNST	1
3593	CNTD1	1
3594	CNTD2	4.369003e-01
3595	CNTF	1
3596	CNTFR	5.084650e-01
3597	CNTLN	9.788069e-01
3598	CNTN1	2.140169e-01
3599	CNTN2	1
3600	CNTN3	9.566276e-01
3601	CNTN4	1
3602	CNTN5	5.772692e-03
3603	CNTN6	9.753648e-01
3604	CNTNAP1	9.707292e-01
3605	CNTNAP2	1
3606	CNTNAP3	6.316154e-01
3607	CNTNAP4	2.528048e-04
3608	CNTNAP5	6.554314e-01
3609	CNTROB	4.883821e-01
3610	COASY	8.179525e-01
3611	COBL	9.380944e-01
3612	COBLL1	9.255488e-01
3613	COBRA1	4.597576e-01
3614	COCH	1
3615	COG1	9.301178e-01
3616	COG2	1.497136e-01
3617	COG3	6.227966e-01
3618	COG4	6.556862e-01
3619	COG5	5.413753e-01
Done

Running MutSig 2:
Scatter job 40: processing genes 3529 - 3619
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CNTNAP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.198004e-02	ci left: 7.523136e-01	ci right 7.691342e-01	k: 7608	n:10000
Cons ci ratio: 2.446268e-02	ci left: 7.107838e-01	ci right 7.284881e-01	k: 7197	n:10000
KS ci ratio: 3.079018e-02	ci left: 6.087955e-01	ci right 6.279355e-01	k: 6184	n:10000
CNTNAP5   10000 perm   3 sec   (3696 perm/sec)   p_kst 6.184000e-01   p_cons 7.197000e-01   p_joint 7.608000e-01

Outputting figure to mutsig2_images.part000000000040/CNTNAP5.31_4017_10000_0.6184_0.7197_0.7608.png
                gene_name: CNTNAP5
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 2 percent done.
CNTNAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.136457e-01	ci left: 7.063669e-03	ci right 1.083076e-02	k: 88	n:10000
Cons ci ratio: 4.277403e-02	ci left: 4.466014e-01	ci right 4.662240e-01	k: 4564	n:10000
KS ci ratio: 1.086451e+00	ci left: 6.202064e-04	ci right 2.095219e-03	k: 12	n:10000
CNTNAP2   10000 perm   2 sec   (4111 perm/sec)   p_kst 1.200000e-03   p_cons 4.564000e-01   p_joint 8.800000e-03

Joint ci ratio: 4.055288e-01	ci left: 3.709812e-03	ci right 5.638552e-03	k: 92	n:20000
Cons ci ratio: 3.121735e-02	ci left: 4.339032e-01	ci right 4.477140e-01	k: 8816	n:20000
KS ci ratio: 7.996665e-01	ci left: 7.291366e-04	ci right 1.725068e-03	k: 23	n:20000
CNTNAP2   20000 perm   5 sec   (3729 perm/sec)   p_kst 1.150000e-03   p_cons 4.408000e-01   p_joint 4.600000e-03

Joint ci ratio: 5.013857e-01	ci left: 1.526547e-03	ci right 2.573657e-03	k: 60	n:30000
Cons ci ratio: 2.544656e-02	ci left: 4.360033e-01	ci right 4.472747e-01	k: 13249	n:30000
KS ci ratio: 7.275617e-01	ci left: 6.202800e-04	ci right 1.348646e-03	k: 28	n:30000
CNTNAP2   30000 perm   8 sec   (3626 perm/sec)   p_kst 9.333333e-04   p_cons 4.416333e-01   p_joint 2.000000e-03

Joint ci ratio: 2.404589e-01	ci left: 5.806474e-03	ci right 7.416412e-03	k: 263	n:40000
Cons ci ratio: 2.093735e-02	ci left: 4.621258e-01	ci right 4.719290e-01	k: 18681	n:40000
KS ci ratio: 5.714476e-01	ci left: 8.420637e-04	ci right 1.533644e-03	k: 46	n:40000
CNTNAP2   40000 perm   11 sec   (3553 perm/sec)   p_kst 1.150000e-03   p_cons 4.670250e-01   p_joint 6.575000e-03

Joint ci ratio: 2.488043e-01	ci left: 4.325586e-03	ci right 5.572957e-03	k: 246	n:50000
Cons ci ratio: 1.879361e-02	ci left: 4.608801e-01	ci right 4.696439e-01	k: 23263	n:50000
KS ci ratio: 5.015933e-01	ci left: 9.158475e-04	ci right 1.544372e-03	k: 60	n:50000
CNTNAP2   50000 perm   14 sec   (3490 perm/sec)   p_kst 1.200000e-03   p_cons 4.652600e-01   p_joint 4.920000e-03

Joint ci ratio: 2.393638e-01	ci left: 3.917504e-03	ci right 4.997958e-03	k: 266	n:60000
Cons ci ratio: 1.710495e-02	ci left: 4.627515e-01	ci right 4.707518e-01	k: 28005	n:60000
KS ci ratio: 4.299746e-01	ci left: 1.087094e-03	ci right 1.696114e-03	k: 82	n:60000
CNTNAP2   60000 perm   17 sec   (3437 perm/sec)   p_kst 1.366667e-03   p_cons 4.667500e-01   p_joint 4.433333e-03

Joint ci ratio: 2.313188e-01	ci left: 3.613220e-03	ci right 4.571464e-03	k: 285	n:70000
Cons ci ratio: 1.584276e-02	ci left: 4.628415e-01	ci right 4.702470e-01	k: 32658	n:70000
KS ci ratio: 4.040427e-01	ci left: 1.072458e-03	ci right 1.627346e-03	k: 93	n:70000
CNTNAP2   70000 perm   21 sec   (3386 perm/sec)   p_kst 1.328571e-03   p_cons 4.665429e-01   p_joint 4.071429e-03

Joint ci ratio: 2.651323e-01	ci left: 2.363978e-03	ci right 3.097823e-03	k: 217	n:80000
Cons ci ratio: 1.454721e-02	ci left: 4.723215e-01	ci right 4.792553e-01	k: 38063	n:80000
KS ci ratio: 3.859979e-01	ci left: 1.039726e-03	ci right 1.547552e-03	k: 102	n:80000
CNTNAP2   80000 perm   24 sec   (3340 perm/sec)   p_kst 1.275000e-03   p_cons 4.757875e-01   p_joint 2.712500e-03

Joint ci ratio: 2.633623e-01	ci left: 2.132404e-03	ci right 2.789210e-03	k: 220	n:90000
Cons ci ratio: 1.372531e-02	ci left: 4.721548e-01	ci right 4.786912e-01	k: 42788	n:90000
KS ci ratio: 3.787333e-01	ci left: 9.643656e-04	ci right 1.424313e-03	k: 106	n:90000
CNTNAP2   90000 perm   27 sec   (3284 perm/sec)   p_kst 1.177778e-03   p_cons 4.754222e-01   p_joint 2.444444e-03

Joint ci ratio: 2.496212e-01	ci left: 2.153105e-03	ci right 2.776314e-03	k: 245	n:100000
Cons ci ratio: 1.304641e-02	ci left: 4.713509e-01	ci right 4.775506e-01	k: 47445	n:100000
KS ci ratio: 3.606505e-01	ci left: 9.677150e-04	ci right 1.402051e-03	k: 117	n:100000
CNTNAP2   100000 perm   31 sec   (3243 perm/sec)   p_kst 1.170000e-03   p_cons 4.744500e-01   p_joint 2.450000e-03

Joint ci ratio: 2.074222e-01	ci left: 2.900712e-03	ci right 3.580442e-03	k: 355	n:110000
Cons ci ratio: 1.245369e-02	ci left: 4.709182e-01	ci right 4.768286e-01	k: 52126	n:110000
KS ci ratio: 3.561660e-01	ci left: 9.045523e-04	ci right 1.304321e-03	k: 120	n:110000
CNTNAP2   110000 perm   34 sec   (3198 perm/sec)   p_kst 1.090909e-03   p_cons 4.738727e-01   p_joint 3.227273e-03

Joint ci ratio: 2.135530e-01	ci left: 2.501046e-03	ci right 3.106712e-03	k: 335	n:120000
Cons ci ratio: 1.193742e-02	ci left: 4.704632e-01	ci right 4.761214e-01	k: 56795	n:120000
KS ci ratio: 3.449498e-01	ci left: 8.899694e-04	ci right 1.268142e-03	k: 128	n:120000
CNTNAP2   120000 perm   38 sec   (3162 perm/sec)   p_kst 1.066667e-03   p_cons 4.732917e-01   p_joint 2.791667e-03

Joint ci ratio: 2.083563e-01	ci left: 2.432510e-03	ci right 3.005415e-03	k: 352	n:130000
Cons ci ratio: 1.146237e-02	ci left: 4.708672e-01	ci right 4.763032e-01	k: 61566	n:130000
KS ci ratio: 3.220373e-01	ci left: 9.554459e-04	ci right 1.328919e-03	k: 147	n:130000
CNTNAP2   130000 perm   42 sec   (3106 perm/sec)   p_kst 1.130769e-03   p_cons 4.735846e-01   p_joint 2.707692e-03

Joint ci ratio: 2.139153e-01	ci left: 2.136949e-03	ci right 2.655433e-03	k: 334	n:140000
Cons ci ratio: 1.104572e-02	ci left: 4.709530e-01	ci right 4.761910e-01	k: 66300	n:140000
KS ci ratio: 3.126735e-01	ci left: 9.463656e-04	ci right 1.303386e-03	k: 156	n:140000
CNTNAP2   140000 perm   46 sec   (3071 perm/sec)   p_kst 1.114286e-03   p_cons 4.735714e-01   p_joint 2.385714e-03

Joint ci ratio: 2.069304e-01	ci left: 2.139741e-03	ci right 2.639804e-03	k: 357	n:150000
Cons ci ratio: 1.067857e-02	ci left: 4.706972e-01	ci right 4.757572e-01	k: 70984	n:150000
KS ci ratio: 3.059322e-01	ci left: 9.263182e-04	ci right 1.266773e-03	k: 163	n:150000
CNTNAP2   150000 perm   49 sec   (3037 perm/sec)   p_kst 1.086667e-03   p_cons 4.732267e-01   p_joint 2.380000e-03

Joint ci ratio: 2.142682e-01	ci left: 1.863887e-03	ci right 2.316959e-03	k: 333	n:160000
Cons ci ratio: 1.033848e-02	ci left: 4.708259e-01	ci right 4.757250e-01	k: 75724	n:160000
KS ci ratio: 2.978700e-01	ci left: 9.204131e-04	ci right 1.248098e-03	k: 172	n:160000
CNTNAP2   160000 perm   53 sec   (3005 perm/sec)   p_kst 1.075000e-03   p_cons 4.732750e-01   p_joint 2.081250e-03

Joint ci ratio: 2.162363e-01	ci left: 1.720841e-03	ci right 2.143493e-03	k: 327	n:170000
Cons ci ratio: 1.002883e-02	ci left: 4.709476e-01	ci right 4.757003e-01	k: 80465	n:170000
KS ci ratio: 2.888290e-01	ci left: 9.262174e-04	ci right 1.244133e-03	k: 183	n:170000
CNTNAP2   170000 perm   57 sec   (2973 perm/sec)   p_kst 1.076471e-03   p_cons 4.733235e-01   p_joint 1.923529e-03

Joint ci ratio: 1.642194e-01	ci left: 2.896383e-03	ci right 3.419822e-03	k: 567	n:180000
Cons ci ratio: 9.740659e-03	ci left: 4.713022e-01	ci right 4.759209e-01	k: 85250	n:180000
KS ci ratio: 2.812871e-01	ci left: 9.263455e-04	ci right 1.234531e-03	k: 193	n:180000
CNTNAP2   180000 perm   61 sec   (2943 perm/sec)   p_kst 1.072222e-03   p_cons 4.736111e-01   p_joint 3.150000e-03

Joint ci ratio: 1.678274e-01	ci left: 2.622842e-03	ci right 3.108312e-03	k: 543	n:190000
Cons ci ratio: 9.485382e-03	ci left: 4.711264e-01	ci right 4.756218e-01	k: 89941	n:190000
KS ci ratio: 2.784363e-01	ci left: 8.971637e-04	ci right 1.192085e-03	k: 197	n:190000
CNTNAP2   190000 perm   65 sec   (2914 perm/sec)   p_kst 1.036842e-03   p_cons 4.733737e-01   p_joint 2.857895e-03

Joint ci ratio: 1.690908e-01	ci left: 2.453368e-03	ci right 2.911236e-03	k: 535	n:200000
Cons ci ratio: 9.245001e-03	ci left: 4.711947e-01	ci right 4.755761e-01	k: 94677	n:200000
KS ci ratio: 2.710097e-01	ci left: 9.035181e-04	ci right 1.191259e-03	k: 208	n:200000
CNTNAP2   200000 perm   69 sec   (2885 perm/sec)   p_kst 1.040000e-03   p_cons 4.733850e-01   p_joint 2.675000e-03

Joint ci ratio: 1.651334e-01	ci left: 2.455173e-03	ci right 2.901588e-03	k: 561	n:210000
Cons ci ratio: 9.022101e-03	ci left: 4.712530e-01	ci right 4.755287e-01	k: 99412	n:210000
KS ci ratio: 2.635483e-01	ci left: 9.138088e-04	ci right 1.195494e-03	k: 220	n:210000
CNTNAP2   210000 perm   74 sec   (2857 perm/sec)   p_kst 1.047619e-03   p_cons 4.733905e-01   p_joint 2.671429e-03

Joint ci ratio: 1.484587e-01	ci left: 2.924515e-03	ci right 3.397816e-03	k: 694	n:220000
Cons ci ratio: 8.812897e-03	ci left: 4.714026e-01	ci right 4.755799e-01	k: 104168	n:220000
KS ci ratio: 2.566711e-01	ci left: 9.232624e-04	ci right 1.199246e-03	k: 232	n:220000
CNTNAP2   220000 perm   78 sec   (2829 perm/sec)   p_kst 1.054545e-03   p_cons 4.734909e-01   p_joint 3.154545e-03

Joint ci ratio: 1.480422e-01	ci left: 2.814096e-03	ci right 3.268136e-03	k: 698	n:230000
Cons ci ratio: 8.618953e-03	ci left: 4.714620e-01	ci right 4.755474e-01	k: 108906	n:230000
KS ci ratio: 2.529023e-01	ci left: 9.116113e-04	ci right 1.179480e-03	k: 239	n:230000
CNTNAP2   230000 perm   82 sec   (2800 perm/sec)   p_kst 1.039130e-03   p_cons 4.735043e-01   p_joint 3.034783e-03

Joint ci ratio: 1.440749e-01	ci left: 2.853408e-03	ci right 3.300393e-03	k: 737	n:240000
Cons ci ratio: 8.438545e-03	ci left: 4.714424e-01	ci right 4.754416e-01	k: 113626	n:240000
KS ci ratio: 2.472983e-01	ci left: 9.165888e-04	ci right 1.179034e-03	k: 250	n:240000
CNTNAP2   240000 perm   87 sec   (2774 perm/sec)   p_kst 1.041667e-03   p_cons 4.734417e-01   p_joint 3.070833e-03

Joint ci ratio: 1.421645e-01	ci left: 2.816403e-03	ci right 3.251245e-03	k: 757	n:250000
Cons ci ratio: 8.267020e-03	ci left: 4.715451e-01	ci right 4.754635e-01	k: 118376	n:250000
KS ci ratio: 2.448740e-01	ci left: 8.986909e-04	ci right 1.153105e-03	k: 255	n:250000
CNTNAP2   250000 perm   91 sec   (2746 perm/sec)   p_kst 1.020000e-03   p_cons 4.735040e-01   p_joint 3.028000e-03

Joint ci ratio: 1.396100e-01	ci left: 2.811976e-03	ci right 3.237684e-03	k: 785	n:260000
Cons ci ratio: 8.102671e-03	ci left: 4.718176e-01	ci right 4.756599e-01	k: 123172	n:260000
KS ci ratio: 2.379985e-01	ci left: 9.183298e-04	ci right 1.169929e-03	k: 270	n:260000
CNTNAP2   260000 perm   96 sec   (2719 perm/sec)   p_kst 1.038462e-03   p_cons 4.737385e-01   p_joint 3.019231e-03

Joint ci ratio: 1.429390e-01	ci left: 2.579185e-03	ci right 2.979754e-03	k: 749	n:270000
Cons ci ratio: 7.956193e-03	ci left: 4.715411e-01	ci right 4.753114e-01	k: 127825	n:270000
KS ci ratio: 2.354087e-01	ci left: 9.052212e-04	ci right 1.150137e-03	k: 276	n:270000
CNTNAP2   270000 perm   100 sec   (2694 perm/sec)   p_kst 1.022222e-03   p_cons 4.734259e-01   p_joint 2.774074e-03

Joint ci ratio: 1.415339e-01	ci left: 2.538733e-03	ci right 2.928816e-03	k: 764	n:280000
Cons ci ratio: 7.806186e-03	ci left: 4.719990e-01	ci right 4.757015e-01	k: 132678	n:280000
KS ci ratio: 2.316756e-01	ci left: 9.031541e-04	ci right 1.143081e-03	k: 285	n:280000
CNTNAP2   280000 perm   105 sec   (2666 perm/sec)   p_kst 1.017857e-03   p_cons 4.738500e-01   p_joint 2.728571e-03

Joint ci ratio: 1.390126e-01	ci left: 2.544354e-03	ci right 2.927760e-03	k: 792	n:290000
Cons ci ratio: 7.669702e-03	ci left: 4.720778e-01	ci right 4.757158e-01	k: 137430	n:290000
KS ci ratio: 2.269624e-01	ci left: 9.110137e-04	ci right 1.147416e-03	k: 297	n:290000
CNTNAP2   290000 perm   110 sec   (2638 perm/sec)   p_kst 1.024138e-03   p_cons 4.738966e-01   p_joint 2.731034e-03

Joint ci ratio: 1.369563e-01	ci left: 2.536780e-03	ci right 2.912929e-03	k: 816	n:300000
Cons ci ratio: 7.542302e-03	ci left: 4.720085e-01	ci right 4.755853e-01	k: 142139	n:300000
KS ci ratio: 2.232477e-01	ci left: 9.121006e-04	ci right 1.144379e-03	k: 307	n:300000
CNTNAP2   300000 perm   115 sec   (2606 perm/sec)   p_kst 1.023333e-03   p_cons 4.737967e-01   p_joint 2.720000e-03

Joint ci ratio: 1.345881e-01	ci left: 2.545320e-03	ci right 2.915687e-03	k: 845	n:310000
Cons ci ratio: 7.420086e-03	ci left: 4.720087e-01	ci right 4.755273e-01	k: 146868	n:310000
KS ci ratio: 2.190212e-01	ci left: 9.192441e-04	ci right 1.148313e-03	k: 319	n:310000
CNTNAP2   310000 perm   120 sec   (2581 perm/sec)   p_kst 1.029032e-03   p_cons 4.737677e-01   p_joint 2.725806e-03

Joint ci ratio: 1.345939e-01	ci left: 2.465772e-03	ci right 2.824580e-03	k: 845	n:320000
Cons ci ratio: 7.304267e-03	ci left: 4.719656e-01	ci right 4.754287e-01	k: 151583	n:320000
KS ci ratio: 2.156773e-01	ci left: 9.200667e-04	ci right 1.145377e-03	k: 329	n:320000
CNTNAP2   320000 perm   125 sec   (2555 perm/sec)   p_kst 1.028125e-03   p_cons 4.736969e-01   p_joint 2.640625e-03

Joint ci ratio: 1.323442e-01	ci left: 2.475997e-03	ci right 2.829797e-03	k: 874	n:330000
Cons ci ratio: 7.193269e-03	ci left: 4.719558e-01	ci right 4.753659e-01	k: 156308	n:330000
KS ci ratio: 2.124820e-01	ci left: 9.208644e-04	ci right 1.142593e-03	k: 339	n:330000
CNTNAP2   330000 perm   130 sec   (2532 perm/sec)   p_kst 1.027273e-03   p_cons 4.736606e-01   p_joint 2.648485e-03

Joint ci ratio: 1.320471e-01	ci left: 2.414544e-03	ci right 2.758727e-03	k: 878	n:340000
Cons ci ratio: 7.089524e-03	ci left: 4.717822e-01	ci right 4.751417e-01	k: 160977	n:340000
KS ci ratio: 2.097248e-01	ci left: 9.188512e-04	ci right 1.136856e-03	k: 348	n:340000
CNTNAP2   340000 perm   136 sec   (2507 perm/sec)   p_kst 1.023529e-03   p_cons 4.734618e-01   p_joint 2.582353e-03

Joint ci ratio: 1.289280e-01	ci left: 2.464408e-03	ci right 2.806767e-03	k: 921	n:350000
Cons ci ratio: 6.987256e-03	ci left: 4.718247e-01	ci right 4.751358e-01	k: 165718	n:350000
KS ci ratio: 2.082400e-01	ci left: 9.061358e-04	ci right 1.119407e-03	k: 353	n:350000
CNTNAP2   350000 perm   141 sec   (2482 perm/sec)   p_kst 1.008571e-03   p_cons 4.734800e-01   p_joint 2.631429e-03

Joint ci ratio: 1.278939e-01	ci left: 2.436278e-03	ci right 2.771808e-03	k: 936	n:360000
Cons ci ratio: 6.892899e-03	ci left: 4.716040e-01	ci right 4.748687e-01	k: 170365	n:360000
KS ci ratio: 2.056426e-01	ci left: 9.046698e-04	ci right 1.114607e-03	k: 362	n:360000
CNTNAP2   360000 perm   146 sec   (2460 perm/sec)   p_kst 1.005556e-03   p_cons 4.732361e-01   p_joint 2.600000e-03

Joint ci ratio: 1.262871e-01	ci left: 2.433235e-03	ci right 2.763821e-03	k: 960	n:370000
Cons ci ratio: 6.798354e-03	ci left: 4.716820e-01	ci right 4.749022e-01	k: 175118	n:370000
KS ci ratio: 2.028673e-01	ci left: 9.058641e-04	ci right 1.112890e-03	k: 372	n:370000
CNTNAP2   370000 perm   152 sec   (2438 perm/sec)   p_kst 1.005405e-03   p_cons 4.732919e-01   p_joint 2.594595e-03

Joint ci ratio: 1.249941e-01	ci left: 2.420179e-03	ci right 2.745375e-03	k: 980	n:380000
Cons ci ratio: 6.709968e-03	ci left: 4.715799e-01	ci right 4.747574e-01	k: 179804	n:380000
KS ci ratio: 2.004635e-01	ci left: 9.045138e-04	ci right 1.108482e-03	k: 381	n:380000
CNTNAP2   380000 perm   157 sec   (2417 perm/sec)   p_kst 1.002632e-03   p_cons 4.731684e-01   p_joint 2.578947e-03

Joint ci ratio: 1.279752e-01	ci left: 2.246376e-03	ci right 2.555963e-03	k: 935	n:390000
Cons ci ratio: 6.624090e-03	ci left: 4.715474e-01	ci right 4.746838e-01	k: 184515	n:390000
KS ci ratio: 1.978901e-01	ci left: 9.056835e-04	ci right 1.106977e-03	k: 391	n:390000
CNTNAP2   390000 perm   163 sec   (2393 perm/sec)   p_kst 1.002564e-03   p_cons 4.731154e-01   p_joint 2.397436e-03

Joint ci ratio: 1.291601e-01	ci left: 2.149076e-03	ci right 2.448206e-03	k: 918	n:400000
Cons ci ratio: 6.542377e-03	ci left: 4.714442e-01	ci right 4.745412e-01	k: 189197	n:400000
KS ci ratio: 1.946875e-01	ci left: 9.139446e-04	ci right 1.113397e-03	k: 404	n:400000
CNTNAP2   400000 perm   169 sec   (2370 perm/sec)   p_kst 1.010000e-03   p_cons 4.729925e-01   p_joint 2.295000e-03

Joint ci ratio: 1.276415e-01	ci left: 2.148595e-03	ci right 2.443875e-03	k: 940	n:410000
Cons ci ratio: 6.459917e-03	ci left: 4.716317e-01	ci right 4.746906e-01	k: 193996	n:410000
KS ci ratio: 1.925600e-01	ci left: 9.125404e-04	ci right 1.109255e-03	k: 413	n:410000
CNTNAP2   410000 perm   175 sec   (2347 perm/sec)   p_kst 1.007317e-03   p_cons 4.731610e-01   p_joint 2.292683e-03

Joint ci ratio: 1.263726e-01	ci left: 2.141238e-03	ci right 2.432363e-03	k: 959	n:420000
Cons ci ratio: 6.384002e-03	ci left: 4.715367e-01	ci right 4.745589e-01	k: 198680	n:420000
KS ci ratio: 1.902757e-01	ci left: 9.134818e-04	ci right 1.107794e-03	k: 423	n:420000
CNTNAP2   420000 perm   181 sec   (2326 perm/sec)   p_kst 1.007143e-03   p_cons 4.730476e-01   p_joint 2.283333e-03

Joint ci ratio: 1.267737e-01	ci left: 2.077926e-03	ci right 2.361407e-03	k: 953	n:430000
Cons ci ratio: 6.308818e-03	ci left: 4.715951e-01	ci right 4.745820e-01	k: 203428	n:430000
KS ci ratio: 1.878543e-01	ci left: 9.166088e-04	ci right 1.108822e-03	k: 434	n:430000
CNTNAP2   430000 perm   186 sec   (2306 perm/sec)   p_kst 1.009302e-03   p_cons 4.730884e-01   p_joint 2.216279e-03

Joint ci ratio: 1.161030e-01	ci left: 2.434024e-03	ci right 2.736222e-03	k: 1136	n:440000
Cons ci ratio: 6.236086e-03	ci left: 4.716624e-01	ci right 4.746152e-01	k: 208181	n:440000
KS ci ratio: 1.849016e-01	ci left: 9.261109e-04	ci right 1.116922e-03	k: 448	n:440000
CNTNAP2   440000 perm   192 sec   (2287 perm/sec)   p_kst 1.018182e-03   p_cons 4.731386e-01   p_joint 2.581818e-03

Joint ci ratio: 1.147979e-01	ci left: 2.436044e-03	ci right 2.734863e-03	k: 1162	n:450000
Cons ci ratio: 6.166556e-03	ci left: 4.716670e-01	ci right 4.745867e-01	k: 212907	n:450000
KS ci ratio: 1.822811e-01	ci left: 9.330923e-04	ci right 1.122316e-03	k: 461	n:450000
CNTNAP2   450000 perm   198 sec   (2268 perm/sec)   p_kst 1.024444e-03   p_cons 4.731267e-01   p_joint 2.582222e-03

Joint ci ratio: 1.136796e-01	ci left: 2.431657e-03	ci right 2.726838e-03	k: 1185	n:460000
Cons ci ratio: 6.100444e-03	ci left: 4.715780e-01	ci right 4.744658e-01	k: 217590	n:460000
KS ci ratio: 1.797689e-01	ci left: 9.397883e-04	ci right 1.127457e-03	k: 474	n:460000
CNTNAP2   460000 perm   205 sec   (2249 perm/sec)   p_kst 1.030435e-03   p_cons 4.730217e-01   p_joint 2.576087e-03

Joint ci ratio: 1.123144e-01	ci left: 2.439879e-03	ci right 2.732264e-03	k: 1214	n:470000
Cons ci ratio: 6.034404e-03	ci left: 4.716590e-01	ci right 4.745158e-01	k: 222351	n:470000
KS ci ratio: 1.769950e-01	ci left: 9.502832e-04	ci right 1.136807e-03	k: 489	n:470000
CNTNAP2   470000 perm   211 sec   (2231 perm/sec)   p_kst 1.040426e-03   p_cons 4.730872e-01   p_joint 2.582979e-03

Joint ci ratio: 1.111765e-01	ci left: 2.439675e-03	ci right 2.728881e-03	k: 1239	n:480000
Cons ci ratio: 5.973084e-03	ci left: 4.715180e-01	ci right 4.743449e-01	k: 227007	n:480000
KS ci ratio: 1.755681e-01	ci left: 9.464167e-04	ci right 1.130525e-03	k: 497	n:480000
CNTNAP2   480000 perm   217 sec   (2213 perm/sec)   p_kst 1.035417e-03   p_cons 4.729313e-01   p_joint 2.581250e-03

Joint ci ratio: 1.020184e-01	ci left: 2.850784e-03	ci right 3.159220e-03	k: 1471	n:490000
Cons ci ratio: 5.909941e-03	ci left: 4.716910e-01	ci right 4.744889e-01	k: 231814	n:490000
KS ci ratio: 1.728129e-01	ci left: 9.583321e-04	ci right 1.141527e-03	k: 513	n:490000
CNTNAP2   490000 perm   223 sec   (2195 perm/sec)   p_kst 1.046939e-03   p_cons 4.730898e-01   p_joint 3.002041e-03

Joint ci ratio: 1.033322e-01	ci left: 2.721660e-03	ci right 3.020147e-03	k: 1434	n:500000
Cons ci ratio: 5.851550e-03	ci left: 4.716193e-01	ci right 4.743890e-01	k: 236502	n:500000
KS ci ratio: 1.709928e-01	ci left: 9.602190e-04	ci right 1.141642e-03	k: 524	n:500000
CNTNAP2   500000 perm   230 sec   (2178 perm/sec)   p_kst 1.048000e-03   p_cons 4.730040e-01   p_joint 2.868000e-03

Joint ci ratio: 1.022686e-01	ci left: 2.725605e-03	ci right 3.021264e-03	k: 1464	n:510000
Cons ci ratio: 5.792076e-03	ci left: 4.717897e-01	ci right 4.745322e-01	k: 241312	n:510000
KS ci ratio: 1.695460e-01	ci left: 9.582862e-04	ci right 1.137656e-03	k: 533	n:510000
CNTNAP2   510000 perm   236 sec   (2161 perm/sec)   p_kst 1.045098e-03   p_cons 4.731608e-01   p_joint 2.870588e-03

Joint ci ratio: 9.112421e-02	ci left: 3.384517e-03	ci right 3.709515e-03	k: 1843	n:520000
Cons ci ratio: 6.058668e-03	ci left: 4.446406e-01	ci right 4.473446e-01	k: 231916	n:520000
KS ci ratio: 1.678262e-01	ci left: 9.601184e-04	ci right 1.137824e-03	k: 544	n:520000
CNTNAP2   520000 perm   243 sec   (2144 perm/sec)   p_kst 1.046154e-03   p_cons 4.459923e-01   p_joint 3.544231e-03

Joint ci ratio: 8.757619e-02	ci left: 3.601062e-03	ci right 3.932701e-03	k: 1995	n:530000
Cons ci ratio: 6.000894e-03	ci left: 4.446819e-01	ci right 4.473602e-01	k: 236391	n:530000
KS ci ratio: 1.664576e-01	ci left: 9.582737e-04	ci right 1.134046e-03	k: 553	n:530000
CNTNAP2   530000 perm   249 sec   (2128 perm/sec)   p_kst 1.043396e-03   p_cons 4.460208e-01   p_joint 3.764151e-03

Joint ci ratio: 8.643491e-02	ci left: 3.630390e-03	ci right 3.960154e-03	k: 2048	n:540000
Cons ci ratio: 5.945632e-03	ci left: 4.446477e-01	ci right 4.473011e-01	k: 240826	n:540000
KS ci ratio: 1.633881e-01	ci left: 9.778126e-04	ci right 1.153537e-03	k: 574	n:540000
CNTNAP2   540000 perm   256 sec   (2111 perm/sec)   p_kst 1.062963e-03   p_cons 4.459741e-01   p_joint 3.792593e-03

Joint ci ratio: 8.738471e-02	ci left: 3.486110e-03	ci right 3.806426e-03	k: 2004	n:550000
Cons ci ratio: 5.892195e-03	ci left: 4.445875e-01	ci right 4.472167e-01	k: 245246	n:550000
KS ci ratio: 1.607525e-01	ci left: 9.931793e-04	ci right 1.168508e-03	k: 593	n:550000
CNTNAP2   550000 perm   263 sec   (2095 perm/sec)   p_kst 1.078182e-03   p_cons 4.459018e-01   p_joint 3.643636e-03

Joint ci ratio: 8.736570e-02	ci left: 3.425601e-03	ci right 3.740284e-03	k: 2005	n:560000
Cons ci ratio: 5.840257e-03	ci left: 4.445225e-01	ci right 4.471280e-01	k: 249662	n:560000
KS ci ratio: 1.598142e-01	ci left: 9.874423e-04	ci right 1.160643e-03	k: 600	n:560000
CNTNAP2   560000 perm   269 sec   (2079 perm/sec)   p_kst 1.071429e-03   p_cons 4.458250e-01   p_joint 3.580357e-03

Joint ci ratio: 8.825588e-02	ci left: 3.296858e-03	ci right 3.602960e-03	k: 1965	n:570000
Cons ci ratio: 5.788847e-03	ci left: 4.445301e-01	ci right 4.471126e-01	k: 254118	n:570000
KS ci ratio: 1.579842e-01	ci left: 9.937038e-04	ci right 1.165818e-03	k: 614	n:570000
CNTNAP2   570000 perm   276 sec   (2063 perm/sec)   p_kst 1.077193e-03   p_cons 4.458211e-01   p_joint 3.447368e-03

Joint ci ratio: 8.803415e-02	ci left: 3.256874e-03	ci right 3.558464e-03	k: 1975	n:580000
Cons ci ratio: 5.737729e-03	ci left: 4.446271e-01	ci right 4.471873e-01	k: 258626	n:580000
KS ci ratio: 1.573467e-01	ci left: 9.848512e-04	ci right 1.154679e-03	k: 619	n:580000
CNTNAP2   580000 perm   283 sec   (2048 perm/sec)   p_kst 1.067241e-03   p_cons 4.459069e-01   p_joint 3.405172e-03

Joint ci ratio: 8.737369e-02	ci left: 3.251405e-03	ci right 3.550114e-03	k: 2005	n:590000
Cons ci ratio: 5.690635e-03	ci left: 4.444871e-01	ci right 4.470253e-01	k: 262996	n:590000
KS ci ratio: 1.564664e-01	ci left: 9.795571e-04	ci right 1.147438e-03	k: 626	n:590000
CNTNAP2   590000 perm   290 sec   (2033 perm/sec)   p_kst 1.061017e-03   p_cons 4.457559e-01   p_joint 3.398305e-03

Joint ci ratio: 8.640907e-02	ci left: 3.270586e-03	ci right 3.567574e-03	k: 2050	n:600000
Cons ci ratio: 5.642968e-03	ci left: 4.445017e-01	ci right 4.470188e-01	k: 267456	n:600000
KS ci ratio: 1.540279e-01	ci left: 9.952703e-04	ci right 1.162940e-03	k: 646	n:600000
CNTNAP2   600000 perm   297 sec   (2018 perm/sec)   p_kst 1.076667e-03   p_cons 4.457600e-01   p_joint 3.416667e-03

Joint ci ratio: 8.597100e-02	ci left: 3.250653e-03	ci right 3.544259e-03	k: 2071	n:610000
Cons ci ratio: 5.596349e-03	ci left: 4.445275e-01	ci right 4.470238e-01	k: 271923	n:610000
KS ci ratio: 1.529678e-01	ci left: 9.931417e-04	ci right 1.159196e-03	k: 655	n:610000
CNTNAP2   610000 perm   305 sec   (2003 perm/sec)   p_kst 1.073770e-03   p_cons 4.457754e-01   p_joint 3.395082e-03

Joint ci ratio: 8.591099e-02	ci left: 3.202954e-03	ci right 3.492040e-03	k: 2074	n:620000
Cons ci ratio: 5.551881e-03	ci left: 4.444622e-01	ci right 4.469383e-01	k: 276334	n:620000
KS ci ratio: 1.520439e-01	ci left: 9.895339e-04	ci right 1.153895e-03	k: 663	n:620000
CNTNAP2   620000 perm   312 sec   (1988 perm/sec)   p_kst 1.069355e-03   p_cons 4.457000e-01   p_joint 3.345161e-03

Joint ci ratio: 8.631064e-02	ci left: 3.122599e-03	ci right 3.405809e-03	k: 2055	n:630000
Cons ci ratio: 5.506846e-03	ci left: 4.445435e-01	ci right 4.469998e-01	k: 280836	n:630000
KS ci ratio: 1.509118e-01	ci left: 9.890984e-04	ci right 1.152053e-03	k: 673	n:630000
CNTNAP2   630000 perm   319 sec   (1974 perm/sec)   p_kst 1.068254e-03   p_cons 4.457714e-01   p_joint 3.261905e-03

Joint ci ratio: 8.604039e-02	ci left: 3.093681e-03	ci right 3.373345e-03	k: 2068	n:640000
Cons ci ratio: 5.463011e-03	ci left: 4.446114e-01	ci right 4.470485e-01	k: 285331	n:640000
KS ci ratio: 1.504668e-01	ci left: 9.796577e-04	ci right 1.140538e-03	k: 677	n:640000
CNTNAP2   640000 perm   327 sec   (1960 perm/sec)   p_kst 1.057812e-03   p_cons 4.458297e-01   p_joint 3.231250e-03

Joint ci ratio: 8.546432e-02	ci left: 3.088239e-03	ci right 3.365449e-03	k: 2096	n:650000
Cons ci ratio: 5.420357e-03	ci left: 4.446634e-01	ci right 4.470817e-01	k: 289817	n:650000
KS ci ratio: 1.490444e-01	ci left: 9.838368e-04	ci right 1.143740e-03	k: 690	n:650000
CNTNAP2   650000 perm   334 sec   (1946 perm/sec)   p_kst 1.061538e-03   p_cons 4.458723e-01   p_joint 3.224615e-03

Joint ci ratio: 8.479964e-02	ci left: 3.090383e-03	ci right 3.365521e-03	k: 2129	n:660000
Cons ci ratio: 5.377748e-03	ci left: 4.448003e-01	ci right 4.472002e-01	k: 294360	n:660000
KS ci ratio: 1.480834e-01	ci left: 9.820596e-04	ci right 1.140554e-03	k: 699	n:660000
CNTNAP2   660000 perm   342 sec   (1932 perm/sec)   p_kst 1.059091e-03   p_cons 4.460000e-01   p_joint 3.225758e-03

Joint ci ratio: 8.416975e-02	ci left: 3.091010e-03	ci right 3.364059e-03	k: 2161	n:670000
Cons ci ratio: 5.337303e-03	ci left: 4.448242e-01	ci right 4.472061e-01	k: 298830	n:670000
KS ci ratio: 1.474533e-01	ci left: 9.760259e-04	ci right 1.132817e-03	k: 705	n:670000
CNTNAP2   670000 perm   349 sec   (1919 perm/sec)   p_kst 1.052239e-03   p_cons 4.460149e-01   p_joint 3.225373e-03

Joint ci ratio: 8.351552e-02	ci left: 3.094506e-03	ci right 3.365636e-03	k: 2195	n:680000
Cons ci ratio: 5.299918e-03	ci left: 4.446460e-01	ci right 4.470103e-01	k: 303163	n:680000
KS ci ratio: 1.466252e-01	ci left: 9.730043e-04	ci right 1.128355e-03	k: 713	n:680000
CNTNAP2   680000 perm   357 sec   (1906 perm/sec)   p_kst 1.048529e-03   p_cons 4.458279e-01   p_joint 3.227941e-03

Joint ci ratio: 8.145923e-02	ci left: 3.208637e-03	ci right 3.482516e-03	k: 2307	n:690000
Cons ci ratio: 5.262242e-03	ci left: 4.445731e-01	ci right 4.469201e-01	k: 307565	n:690000
KS ci ratio: 1.457099e-01	ci left: 9.714692e-04	ci right 1.125523e-03	k: 722	n:690000
CNTNAP2   690000 perm   365 sec   (1892 perm/sec)   p_kst 1.046377e-03   p_cons 4.457464e-01   p_joint 3.343478e-03

Joint ci ratio: 8.077927e-02	ci left: 3.217384e-03	ci right 3.489609e-03	k: 2346	n:700000
Cons ci ratio: 5.226188e-03	ci left: 4.444237e-01	ci right 4.467539e-01	k: 311912	n:700000
KS ci ratio: 1.441233e-01	ci left: 9.796198e-04	ci right 1.133129e-03	k: 738	n:700000
CNTNAP2   700000 perm   372 sec   (1879 perm/sec)   p_kst 1.054286e-03   p_cons 4.455886e-01   p_joint 3.351429e-03

Joint ci ratio: 8.013291e-02	ci left: 3.224513e-03	ci right 3.495057e-03	k: 2384	n:710000
Cons ci ratio: 5.189356e-03	ci left: 4.444223e-01	ci right 4.467359e-01	k: 316361	n:710000
KS ci ratio: 1.423047e-01	ci left: 9.916244e-04	ci right 1.144888e-03	k: 757	n:710000
CNTNAP2   710000 perm   380 sec   (1866 perm/sec)   p_kst 1.066197e-03   p_cons 4.455789e-01   p_joint 3.357746e-03

Joint ci ratio: 7.963383e-02	ci left: 3.220562e-03	ci right 3.489014e-03	k: 2414	n:720000
Cons ci ratio: 5.153537e-03	ci left: 4.443973e-01	ci right 4.466948e-01	k: 320793	n:720000
KS ci ratio: 1.412832e-01	ci left: 9.925877e-04	ci right 1.144806e-03	k: 768	n:720000
CNTNAP2   720000 perm   389 sec   (1853 perm/sec)   p_kst 1.066667e-03   p_cons 4.455458e-01   p_joint 3.352778e-03

Joint ci ratio: 7.914397e-02	ci left: 3.216725e-03	ci right 3.483131e-03	k: 2444	n:730000
Cons ci ratio: 5.118975e-03	ci left: 4.443224e-01	ci right 4.466041e-01	k: 325188	n:730000
KS ci ratio: 1.404638e-01	ci left: 9.908848e-04	ci right 1.141887e-03	k: 777	n:730000
CNTNAP2   730000 perm   397 sec   (1840 perm/sec)   p_kst 1.064384e-03   p_cons 4.454630e-01   p_joint 3.347945e-03

Joint ci ratio: 7.784673e-02	ci left: 3.281895e-03	ci right 3.549042e-03	k: 2526	n:740000
Cons ci ratio: 5.084362e-03	ci left: 4.443212e-01	ci right 4.465873e-01	k: 329636	n:740000
KS ci ratio: 1.395698e-01	ci left: 9.905346e-04	ci right 1.140442e-03	k: 787	n:740000
CNTNAP2   740000 perm   405 sec   (1826 perm/sec)   p_kst 1.063514e-03   p_cons 4.454541e-01   p_joint 3.413514e-03

Joint ci ratio: 7.738893e-02	ci left: 3.277360e-03	ci right 3.542498e-03	k: 2556	n:750000
Cons ci ratio: 5.049570e-03	ci left: 4.444054e-01	ci right 4.466564e-01	k: 334148	n:750000
KS ci ratio: 1.387796e-01	ci left: 9.889095e-04	ci right 1.137654e-03	k: 796	n:750000
CNTNAP2   750000 perm   413 sec   (1814 perm/sec)   p_kst 1.061333e-03   p_cons 4.455307e-01   p_joint 3.408000e-03

Joint ci ratio: 7.684974e-02	ci left: 3.280692e-03	ci right 3.544168e-03	k: 2592	n:760000
Cons ci ratio: 5.016003e-03	ci left: 4.444361e-01	ci right 4.466722e-01	k: 338621	n:760000
KS ci ratio: 1.382606e-01	ci left: 9.835185e-04	ci right 1.130853e-03	k: 802	n:760000
CNTNAP2   760000 perm   422 sec   (1802 perm/sec)   p_kst 1.055263e-03   p_cons 4.455539e-01   p_joint 3.410526e-03

Joint ci ratio: 7.654108e-02	ci left: 3.264834e-03	ci right 3.525937e-03	k: 2613	n:770000
Cons ci ratio: 4.983070e-03	ci left: 4.444686e-01	ci right 4.466902e-01	k: 343096	n:770000
KS ci ratio: 1.374924e-01	ci left: 9.820306e-04	ci right 1.128258e-03	k: 811	n:770000
CNTNAP2   770000 perm   430 sec   (1790 perm/sec)   p_kst 1.053247e-03   p_cons 4.455792e-01   p_joint 3.393506e-03

Joint ci ratio: 7.589010e-02	ci left: 3.279571e-03	ci right 3.539523e-03	k: 2658	n:780000
Cons ci ratio: 4.951061e-03	ci left: 4.444722e-01	ci right 4.466795e-01	k: 347549	n:780000
KS ci ratio: 1.359927e-01	ci left: 9.917283e-04	ci right 1.137659e-03	k: 829	n:780000
CNTNAP2   780000 perm   439 sec   (1778 perm/sec)   p_kst 1.062821e-03   p_cons 4.455756e-01   p_joint 3.407692e-03

Joint ci ratio: 7.540951e-02	ci left: 3.280282e-03	ci right 3.538571e-03	k: 2692	n:790000
Cons ci ratio: 4.920227e-03	ci left: 4.444188e-01	ci right 4.466120e-01	k: 351957	n:790000
KS ci ratio: 1.351808e-01	ci left: 9.914036e-04	ci right 1.136345e-03	k: 839	n:790000
CNTNAP2   790000 perm   447 sec   (1766 perm/sec)   p_kst 1.062025e-03   p_cons 4.455152e-01   p_joint 3.407595e-03

Joint ci ratio: 7.514560e-02	ci left: 3.262580e-03	ci right 3.518537e-03	k: 2711	n:800000
Cons ci ratio: 4.888614e-03	ci left: 4.445029e-01	ci right 4.466825e-01	k: 356474	n:800000
KS ci ratio: 1.343834e-01	ci left: 9.910896e-04	ci right 1.135062e-03	k: 849	n:800000
CNTNAP2   800000 perm   456 sec   (1754 perm/sec)   p_kst 1.061250e-03   p_cons 4.455925e-01   p_joint 3.388750e-03

Joint ci ratio: 7.576637e-02	ci left: 3.168999e-03	ci right 3.419759e-03	k: 2667	n:810000
Cons ci ratio: 4.858258e-03	ci left: 4.445184e-01	ci right 4.466845e-01	k: 360937	n:810000
KS ci ratio: 1.335221e-01	ci left: 9.919791e-04	ci right 1.135084e-03	k: 860	n:810000
CNTNAP2   810000 perm   465 sec   (1742 perm/sec)   p_kst 1.061728e-03   p_cons 4.456012e-01   p_joint 3.292593e-03

Joint ci ratio: 7.682965e-02	ci left: 3.043019e-03	ci right 3.287340e-03	k: 2594	n:820000
Cons ci ratio: 4.828580e-03	ci left: 4.445214e-01	ci right 4.466741e-01	k: 365390	n:820000
KS ci ratio: 1.326012e-01	ci left: 9.940288e-04	ci right 1.136363e-03	k: 872	n:820000
CNTNAP2   820000 perm   474 sec   (1730 perm/sec)   p_kst 1.063415e-03   p_cons 4.455976e-01   p_joint 3.163415e-03

Joint ci ratio: 7.631656e-02	ci left: 3.047718e-03	ci right 3.290710e-03	k: 2629	n:830000
Cons ci ratio: 4.798947e-03	ci left: 4.445749e-01	ci right 4.467147e-01	k: 369885	n:830000
KS ci ratio: 1.318482e-01	ci left: 9.937022e-04	ci right 1.135118e-03	k: 882	n:830000
CNTNAP2   830000 perm   483 sec   (1720 perm/sec)   p_kst 1.062651e-03   p_cons 4.456446e-01   p_joint 3.167470e-03

Joint ci ratio: 7.295766e-02	ci left: 3.300013e-03	ci right 3.551049e-03	k: 2876	n:840000
Cons ci ratio: 4.770899e-03	ci left: 4.445188e-01	ci right 4.466458e-01	k: 374289	n:840000
KS ci ratio: 1.312552e-01	ci left: 9.910827e-04	ci right 1.131442e-03	k: 890	n:840000
CNTNAP2   840000 perm   492 sec   (1709 perm/sec)   p_kst 1.059524e-03   p_cons 4.455821e-01   p_joint 3.423810e-03

Joint ci ratio: 7.264312e-02	ci left: 3.290065e-03	ci right 3.539220e-03	k: 2901	n:850000
Cons ci ratio: 4.742355e-03	ci left: 4.445665e-01	ci right 4.466809e-01	k: 378780	n:850000
KS ci ratio: 1.305248e-01	ci left: 9.908024e-04	ci right 1.130281e-03	k: 900	n:850000
CNTNAP2   850000 perm   501 sec   (1698 perm/sec)   p_kst 1.058824e-03   p_cons 4.456235e-01   p_joint 3.412941e-03

Joint ci ratio: 7.239468e-02	ci left: 3.274642e-03	ci right 3.521745e-03	k: 2921	n:860000
Cons ci ratio: 4.714805e-03	ci left: 4.445619e-01	ci right 4.466640e-01	k: 383227	n:860000
KS ci ratio: 1.301646e-01	ci left: 9.849056e-04	ci right 1.123142e-03	k: 905	n:860000
CNTNAP2   860000 perm   510 sec   (1687 perm/sec)   p_kst 1.052326e-03   p_cons 4.456128e-01   p_joint 3.396512e-03

Joint ci ratio: 7.218571e-02	ci left: 3.256188e-03	ci right 3.501160e-03	k: 2938	n:870000
Cons ci ratio: 4.688253e-03	ci left: 4.445023e-01	ci right 4.465923e-01	k: 387626	n:870000
KS ci ratio: 1.290999e-01	ci left: 9.902673e-04	ci right 1.128032e-03	k: 920	n:870000
CNTNAP2   870000 perm   519 sec   (1677 perm/sec)   p_kst 1.057471e-03   p_cons 4.455471e-01   p_joint 3.377011e-03

Joint ci ratio: 7.288714e-02	ci left: 3.156698e-03	ci right 3.396590e-03	k: 2882	n:880000
Cons ci ratio: 4.661555e-03	ci left: 4.445066e-01	ci right 4.465847e-01	k: 392080	n:880000
KS ci ratio: 1.283358e-01	ci left: 9.911118e-04	ci right 1.128116e-03	k: 931	n:880000
CNTNAP2   880000 perm   528 sec   (1666 perm/sec)   p_kst 1.057955e-03   p_cons 4.455455e-01   p_joint 3.275000e-03

Joint ci ratio: 7.256096e-02	ci left: 3.149911e-03	ci right 3.388171e-03	k: 2908	n:890000
Cons ci ratio: 4.634897e-03	ci left: 4.445546e-01	ci right 4.466210e-01	k: 396573	n:890000
KS ci ratio: 1.279250e-01	ci left: 9.865011e-04	ci right 1.122398e-03	k: 937	n:890000
CNTNAP2   890000 perm   537 sec   (1656 perm/sec)   p_kst 1.052809e-03   p_cons 4.455876e-01   p_joint 3.267416e-03

Joint ci ratio: 7.458275e-02	ci left: 2.945846e-03	ci right 3.175148e-03	k: 2753	n:900000
Cons ci ratio: 4.608784e-03	ci left: 4.445916e-01	ci right 4.466465e-01	k: 401057	n:900000
KS ci ratio: 1.275181e-01	ci left: 9.819935e-04	ci right 1.116806e-03	k: 943	n:900000
CNTNAP2   900000 perm   547 sec   (1646 perm/sec)   p_kst 1.047778e-03   p_cons 4.456189e-01   p_joint 3.058889e-03

Joint ci ratio: 7.436763e-02	ci left: 2.930729e-03	ci right 3.158167e-03	k: 2769	n:910000
Cons ci ratio: 4.583862e-03	ci left: 4.445466e-01	ci right 4.465900e-01	k: 405467	n:910000
KS ci ratio: 1.271151e-01	ci left: 9.775856e-04	ci right 1.111337e-03	k: 949	n:910000
CNTNAP2   910000 perm   557 sec   (1635 perm/sec)   p_kst 1.042857e-03   p_cons 4.455681e-01   p_joint 3.042857e-03

Joint ci ratio: 7.396818e-02	ci left: 2.930877e-03	ci right 3.157053e-03	k: 2799	n:920000
Cons ci ratio: 4.559200e-03	ci left: 4.445177e-01	ci right 4.465500e-01	k: 409891	n:920000
KS ci ratio: 1.265834e-01	ci left: 9.753793e-04	ci right 1.108229e-03	k: 957	n:920000
CNTNAP2   920000 perm   566 sec   (1625 perm/sec)   p_kst 1.040217e-03   p_cons 4.455337e-01   p_joint 3.042391e-03

Joint ci ratio: 7.366654e-02	ci left: 2.923636e-03	ci right 3.148294e-03	k: 2822	n:930000
Cons ci ratio: 4.535158e-03	ci left: 4.444648e-01	ci right 4.464861e-01	k: 414292	n:930000
KS ci ratio: 1.261237e-01	ci left: 9.721802e-04	ci right 1.104077e-03	k: 964	n:930000
CNTNAP2   930000 perm   576 sec   (1614 perm/sec)   p_kst 1.036559e-03   p_cons 4.454753e-01   p_joint 3.034409e-03

Joint ci ratio: 7.338148e-02	ci left: 2.915507e-03	ci right 3.138636e-03	k: 2844	n:940000
Cons ci ratio: 4.511075e-03	ci left: 4.444587e-01	ci right 4.464693e-01	k: 418736	n:940000
KS ci ratio: 1.256043e-01	ci left: 9.700805e-04	ci right 1.101111e-03	k: 972	n:940000
CNTNAP2   940000 perm   586 sec   (1604 perm/sec)   p_kst 1.034043e-03   p_cons 4.454638e-01   p_joint 3.025532e-03

Joint ci ratio: 7.362967e-02	ci left: 2.865183e-03	ci right 3.085234e-03	k: 2825	n:950000
Cons ci ratio: 4.487410e-03	ci left: 4.444486e-01	ci right 4.464486e-01	k: 423176	n:950000
KS ci ratio: 1.250913e-01	ci left: 9.680261e-04	ci right 1.098205e-03	k: 980	n:950000
CNTNAP2   950000 perm   596 sec   (1594 perm/sec)   p_kst 1.031579e-03   p_cons 4.454484e-01   p_joint 2.973684e-03

Joint ci ratio: 7.326766e-02	ci left: 2.863968e-03	ci right 3.082798e-03	k: 2853	n:960000
Cons ci ratio: 4.464226e-03	ci left: 4.444263e-01	ci right 4.464157e-01	k: 427604	n:960000
KS ci ratio: 1.245845e-01	ci left: 9.660155e-04	ci right 1.095359e-03	k: 988	n:960000
CNTNAP2   960000 perm   606 sec   (1585 perm/sec)   p_kst 1.029167e-03   p_cons 4.454208e-01   p_joint 2.971875e-03

Joint ci ratio: 7.307644e-02	ci left: 2.849623e-03	ci right 3.066764e-03	k: 2868	n:970000
Cons ci ratio: 4.441593e-03	ci left: 4.443827e-01	ci right 4.463619e-01	k: 432011	n:970000
KS ci ratio: 1.240215e-01	ci left: 9.650464e-04	ci right 1.093633e-03	k: 997	n:970000
CNTNAP2   970000 perm   615 sec   (1576 perm/sec)   p_kst 1.027835e-03   p_cons 4.453722e-01   p_joint 2.956701e-03

Joint ci ratio: 7.310310e-02	ci left: 2.818540e-03	ci right 3.033395e-03	k: 2866	n:980000
Cons ci ratio: 4.418615e-03	ci left: 4.444167e-01	ci right 4.463857e-01	k: 436493	n:980000
KS ci ratio: 1.232824e-01	ci left: 9.670652e-04	ci right 1.095097e-03	k: 1009	n:980000
CNTNAP2   980000 perm   625 sec   (1567 perm/sec)   p_kst 1.029592e-03   p_cons 4.454010e-01   p_joint 2.924490e-03

Joint ci ratio: 7.444422e-02	ci left: 2.688933e-03	ci right 2.897831e-03	k: 2764	n:990000
Cons ci ratio: 4.396126e-03	ci left: 4.444348e-01	ci right 4.463938e-01	k: 440960	n:990000
KS ci ratio: 1.223768e-01	ci left: 9.719830e-04	ci right 1.099652e-03	k: 1024	n:990000
CNTNAP2   990000 perm   635 sec   (1558 perm/sec)   p_kst 1.034343e-03   p_cons 4.454141e-01   p_joint 2.791919e-03

Joint ci ratio: 7.441827e-02	ci left: 2.664005e-03	ci right 2.870892e-03	k: 2766	n:1000000
Cons ci ratio: 4.374906e-03	ci left: 4.443476e-01	ci right 4.462968e-01	k: 445322	n:1000000
KS ci ratio: 1.220204e-01	ci left: 9.680796e-04	ci right 1.094839e-03	k: 1030	n:1000000
CNTNAP2   1000000 perm   645 sec   (1549 perm/sec)   p_kst 1.030000e-03   p_cons 4.453220e-01   p_joint 2.766000e-03

Joint ci ratio: 7.429823e-02	ci left: 2.646373e-03	ci right 2.851544e-03	k: 2775	n:1010000
Cons ci ratio: 4.352917e-03	ci left: 4.443839e-01	ci right 4.463234e-01	k: 449807	n:1010000
KS ci ratio: 1.214914e-01	ci left: 9.671341e-04	ci right 1.093181e-03	k: 1039	n:1010000
CNTNAP2   1010000 perm   656 sec   (1541 perm/sec)   p_kst 1.028713e-03   p_cons 4.453535e-01   p_joint 2.747525e-03

Joint ci ratio: 7.392632e-02	ci left: 2.647371e-03	ci right 2.851548e-03	k: 2803	n:1020000
Cons ci ratio: 4.331437e-03	ci left: 4.443989e-01	ci right 4.463289e-01	k: 454271	n:1020000
KS ci ratio: 1.212007e-01	ci left: 9.624055e-04	ci right 1.087515e-03	k: 1044	n:1020000
CNTNAP2   1020000 perm   666 sec   (1532 perm/sec)   p_kst 1.023529e-03   p_cons 4.453637e-01   p_joint 2.748039e-03

Joint ci ratio: 7.339122e-02	ci left: 2.660741e-03	ci right 2.864401e-03	k: 2844	n:1030000
Cons ci ratio: 4.310542e-03	ci left: 4.443826e-01	ci right 4.463032e-01	k: 458703	n:1030000
KS ci ratio: 1.198878e-01	ci left: 9.747189e-04	ci right 1.099959e-03	k: 1067	n:1030000
CNTNAP2   1030000 perm   676 sec   (1524 perm/sec)   p_kst 1.035922e-03   p_cons 4.453427e-01   p_joint 2.761165e-03

Joint ci ratio: 7.307096e-02	ci left: 2.658756e-03	ci right 2.861337e-03	k: 2869	n:1040000
Cons ci ratio: 4.289313e-03	ci left: 4.444397e-01	ci right 4.463510e-01	k: 463211	n:1040000
KS ci ratio: 1.193859e-01	ci left: 9.737414e-04	ci right 1.098295e-03	k: 1076	n:1040000
CNTNAP2   1040000 perm   686 sec   (1515 perm/sec)   p_kst 1.034615e-03   p_cons 4.453952e-01   p_joint 2.758654e-03

Joint ci ratio: 7.275487e-02	ci left: 2.656809e-03	ci right 2.858330e-03	k: 2894	n:1050000
Cons ci ratio: 4.268945e-03	ci left: 4.444319e-01	ci right 4.463341e-01	k: 467652	n:1050000
KS ci ratio: 1.187808e-01	ci left: 9.746319e-04	ci right 1.098623e-03	k: 1087	n:1050000
CNTNAP2   1050000 perm   697 sec   (1507 perm/sec)   p_kst 1.035238e-03   p_cons 4.453829e-01   p_joint 2.756190e-03

Joint ci ratio: 7.422268e-02	ci left: 2.527094e-03	ci right 2.722809e-03	k: 2781	n:1060000
Cons ci ratio: 4.249247e-03	ci left: 4.443800e-01	ci right 4.462732e-01	k: 472046	n:1060000
KS ci ratio: 1.179701e-01	ci left: 9.791693e-04	ci right 1.102828e-03	k: 1102	n:1060000
CNTNAP2   1060000 perm   707 sec   (1499 perm/sec)   p_kst 1.039623e-03   p_cons 4.453264e-01   p_joint 2.623585e-03

Joint ci ratio: 7.401052e-02	ci left: 2.518152e-03	ci right 2.712593e-03	k: 2797	n:1070000
Cons ci ratio: 4.229714e-03	ci left: 4.443412e-01	ci right 4.462255e-01	k: 476453	n:1070000
KS ci ratio: 1.175977e-01	ci left: 9.763674e-04	ci right 1.099256e-03	k: 1109	n:1070000
CNTNAP2   1070000 perm   718 sec   (1491 perm/sec)   p_kst 1.036449e-03   p_cons 4.452832e-01   p_joint 2.614019e-03

Joint ci ratio: 7.366903e-02	ci left: 2.518465e-03	ci right 2.711995e-03	k: 2823	n:1080000
Cons ci ratio: 4.210062e-03	ci left: 4.443485e-01	ci right 4.462240e-01	k: 480909	n:1080000
KS ci ratio: 1.170716e-01	ci left: 9.763145e-04	ci right 1.098609e-03	k: 1119	n:1080000
CNTNAP2   1080000 perm   728 sec   (1483 perm/sec)   p_kst 1.036111e-03   p_cons 4.452861e-01   p_joint 2.613889e-03

Joint ci ratio: 7.373539e-02	ci left: 2.490856e-03	ci right 2.682444e-03	k: 2818	n:1090000
Cons ci ratio: 4.190712e-03	ci left: 4.443520e-01	ci right 4.462189e-01	k: 485361	n:1090000
KS ci ratio: 1.165525e-01	ci left: 9.762637e-04	ci right 1.097972e-03	k: 1129	n:1090000
CNTNAP2   1090000 perm   739 sec   (1475 perm/sec)   p_kst 1.035780e-03   p_cons 4.452853e-01   p_joint 2.585321e-03

Joint ci ratio: 7.449517e-02	ci left: 2.417351e-03	ci right 2.605284e-03	k: 2761	n:1100000
Cons ci ratio: 4.171780e-03	ci left: 4.443373e-01	ci right 4.461957e-01	k: 489793	n:1100000
KS ci ratio: 1.160402e-01	ci left: 9.762151e-04	ci right 1.097346e-03	k: 1139	n:1100000
CNTNAP2   1100000 perm   750 sec   (1467 perm/sec)   p_kst 1.035455e-03   p_cons 4.452664e-01   p_joint 2.510000e-03

Joint ci ratio: 7.500131e-02	ci left: 2.362860e-03	ci right 2.547860e-03	k: 2724	n:1110000
Cons ci ratio: 4.152670e-03	ci left: 4.443742e-01	ci right 4.462243e-01	k: 494282	n:1110000
KS ci ratio: 1.153840e-01	ci left: 9.787931e-04	ci right 1.099510e-03	k: 1152	n:1110000
CNTNAP2   1110000 perm   761 sec   (1458 perm/sec)   p_kst 1.037838e-03   p_cons 4.452991e-01   p_joint 2.454054e-03

Joint ci ratio: 7.463241e-02	ci left: 2.365419e-03	ci right 2.549669e-03	k: 2751	n:1120000
Cons ci ratio: 4.133290e-03	ci left: 4.444739e-01	ci right 4.463157e-01	k: 498842	n:1120000
KS ci ratio: 1.150355e-01	ci left: 9.761237e-04	ci right 1.096124e-03	k: 1159	n:1120000
CNTNAP2   1120000 perm   772 sec   (1450 perm/sec)   p_kst 1.034821e-03   p_cons 4.453946e-01   p_joint 2.456250e-03

Joint ci ratio: 7.014995e-02	ci left: 2.659060e-03	ci right 2.853237e-03	k: 3113	n:1130000
Cons ci ratio: 4.114688e-03	ci left: 4.445108e-01	ci right 4.463444e-01	k: 503333	n:1130000
KS ci ratio: 1.147394e-01	ci left: 9.726425e-04	ci right 1.091886e-03	k: 1165	n:1130000
CNTNAP2   1130000 perm   783 sec   (1443 perm/sec)   p_kst 1.030973e-03   p_cons 4.454274e-01   p_joint 2.754867e-03

Joint ci ratio: 6.993717e-02	ci left: 2.652110e-03	ci right 2.845167e-03	k: 3132	n:1140000
Cons ci ratio: 4.096836e-03	ci left: 4.444865e-01	ci right 4.463120e-01	k: 507755	n:1140000
KS ci ratio: 1.144455e-01	ci left: 9.692228e-04	ci right 1.087722e-03	k: 1171	n:1140000
CNTNAP2   1140000 perm   794 sec   (1435 perm/sec)   p_kst 1.027193e-03   p_cons 4.453991e-01   p_joint 2.747368e-03

Joint ci ratio: 6.982636e-02	ci left: 2.637591e-03	ci right 2.829275e-03	k: 3142	n:1150000
Cons ci ratio: 4.079308e-03	ci left: 4.444513e-01	ci right 4.462689e-01	k: 512164	n:1150000
KS ci ratio: 1.138640e-01	ci left: 9.709316e-04	ci right 1.088996e-03	k: 1183	n:1150000
CNTNAP2   1150000 perm   806 sec   (1428 perm/sec)   p_kst 1.028696e-03   p_cons 4.453600e-01   p_joint 2.732174e-03

Joint ci ratio: 6.945152e-02	ci left: 2.643653e-03	ci right 2.834705e-03	k: 3176	n:1160000
Cons ci ratio: 4.061982e-03	ci left: 4.444194e-01	ci right 4.462291e-01	k: 516576	n:1160000
KS ci ratio: 1.132438e-01	ci left: 9.734502e-04	ci right 1.091133e-03	k: 1196	n:1160000
CNTNAP2   1160000 perm   817 sec   (1420 perm/sec)   p_kst 1.031034e-03   p_cons 4.453241e-01   p_joint 2.737931e-03

Joint ci ratio: 6.932118e-02	ci left: 2.631136e-03	ci right 2.820912e-03	k: 3188	n:1170000
Cons ci ratio: 4.044251e-03	ci left: 4.444641e-01	ci right 4.462661e-01	k: 521077	n:1170000
KS ci ratio: 1.125407e-01	ci left: 9.775887e-04	ci right 1.094989e-03	k: 1211	n:1170000
CNTNAP2   1170000 perm   828 sec   (1412 perm/sec)   p_kst 1.035043e-03   p_cons 4.453650e-01   p_joint 2.724786e-03

Joint ci ratio: 6.991807e-02	ci left: 2.563869e-03	ci right 2.750450e-03	k: 3134	n:1180000
Cons ci ratio: 4.027027e-03	ci left: 4.444742e-01	ci right 4.462685e-01	k: 525538	n:1180000
KS ci ratio: 1.122172e-01	ci left: 9.750695e-04	ci right 1.091809e-03	k: 1218	n:1180000
CNTNAP2   1180000 perm   840 sec   (1405 perm/sec)   p_kst 1.032203e-03   p_cons 4.453712e-01   p_joint 2.655932e-03

Joint ci ratio: 6.960787e-02	ci left: 2.565443e-03	ci right 2.751277e-03	k: 3162	n:1190000
Cons ci ratio: 4.010288e-03	ci left: 4.444513e-01	ci right 4.462381e-01	k: 529960	n:1190000
KS ci ratio: 1.116689e-01	ci left: 9.766773e-04	ci right 1.093000e-03	k: 1230	n:1190000
CNTNAP2   1190000 perm   851 sec   (1398 perm/sec)   p_kst 1.033613e-03   p_cons 4.453445e-01   p_joint 2.657143e-03

Joint ci ratio: 6.934536e-02	ci left: 2.563717e-03	ci right 2.748697e-03	k: 3186	n:1200000
Cons ci ratio: 3.993850e-03	ci left: 4.444172e-01	ci right 4.461964e-01	k: 534368	n:1200000
KS ci ratio: 1.113979e-01	ci left: 9.733988e-04	ci right 1.089031e-03	k: 1236	n:1200000
CNTNAP2   1200000 perm   863 sec   (1391 perm/sec)   p_kst 1.030000e-03   p_cons 4.453067e-01   p_joint 2.655000e-03

Joint ci ratio: 6.920474e-02	ci left: 2.553086e-03	ci right 2.736911e-03	k: 3199	n:1210000
Cons ci ratio: 3.977465e-03	ci left: 4.444018e-01	ci right 4.461737e-01	k: 538798	n:1210000
KS ci ratio: 1.110395e-01	ci left: 9.717818e-04	ci right 1.086826e-03	k: 1244	n:1210000
CNTNAP2   1210000 perm   874 sec   (1384 perm/sec)   p_kst 1.028099e-03   p_cons 4.452876e-01   p_joint 2.643802e-03

Joint ci ratio: 6.912973e-02	ci left: 2.537797e-03	ci right 2.720315e-03	k: 3206	n:1220000
Cons ci ratio: 3.960847e-03	ci left: 4.444408e-01	ci right 4.462054e-01	k: 543294	n:1220000
KS ci ratio: 1.106846e-01	ci left: 9.701918e-04	ci right 1.084657e-03	k: 1252	n:1220000
CNTNAP2   1220000 perm   886 sec   (1377 perm/sec)   p_kst 1.026230e-03   p_cons 4.453230e-01   p_joint 2.627869e-03

Joint ci ratio: 6.890465e-02	ci left: 2.533943e-03	ci right 2.715566e-03	k: 3227	n:1230000
Cons ci ratio: 3.944890e-03	ci left: 4.444222e-01	ci right 4.461797e-01	k: 547720	n:1230000
KS ci ratio: 1.103769e-01	ci left: 9.678378e-04	ci right 1.081687e-03	k: 1259	n:1230000
CNTNAP2   1230000 perm   898 sec   (1370 perm/sec)   p_kst 1.023577e-03   p_cons 4.453008e-01   p_joint 2.623577e-03

Joint ci ratio: 6.864998e-02	ci left: 2.532530e-03	ci right 2.713354e-03	k: 3251	n:1240000
Cons ci ratio: 3.929073e-03	ci left: 4.444104e-01	ci right 4.461608e-01	k: 552154	n:1240000
KS ci ratio: 1.100282e-01	ci left: 9.663064e-04	ci right 1.079593e-03	k: 1267	n:1240000
CNTNAP2   1240000 perm   910 sec   (1363 perm/sec)   p_kst 1.021774e-03   p_cons 4.452855e-01   p_joint 2.621774e-03

Joint ci ratio: 6.840858e-02	ci left: 2.530354e-03	ci right 2.710363e-03	k: 3274	n:1250000
Cons ci ratio: 3.913762e-03	ci left: 4.443589e-01	ci right 4.461022e-01	k: 556538	n:1250000
KS ci ratio: 1.095540e-01	ci left: 9.671343e-04	ci right 1.079998e-03	k: 1278	n:1250000
CNTNAP2   1250000 perm   922 sec   (1356 perm/sec)   p_kst 1.022400e-03   p_cons 4.452304e-01   p_joint 2.619200e-03

Joint ci ratio: 6.960200e-02	ci left: 2.423692e-03	ci right 2.599242e-03	k: 3163	n:1260000
Cons ci ratio: 3.897914e-03	ci left: 4.443986e-01	ci right 4.461350e-01	k: 561036	n:1260000
KS ci ratio: 1.088749e-01	ci left: 9.718103e-04	ci right 1.084472e-03	k: 1294	n:1260000
CNTNAP2   1260000 perm   934 sec   (1350 perm/sec)   p_kst 1.026984e-03   p_cons 4.452667e-01   p_joint 2.510317e-03

Joint ci ratio: 6.766826e-02	ci left: 2.546235e-03	ci right 2.725336e-03	k: 3346	n:1270000
Cons ci ratio: 3.882375e-03	ci left: 4.444228e-01	ci right 4.461523e-01	k: 565515	n:1270000
KS ci ratio: 1.083324e-01	ci left: 9.741165e-04	ci right 1.086447e-03	k: 1307	n:1270000
CNTNAP2   1270000 perm   946 sec   (1343 perm/sec)   p_kst 1.029134e-03   p_cons 4.452874e-01   p_joint 2.634646e-03

Joint ci ratio: 6.737693e-02	ci left: 2.548617e-03	ci right 2.727083e-03	k: 3375	n:1280000
Cons ci ratio: 3.866524e-03	ci left: 4.445098e-01	ci right 4.462326e-01	k: 570075	n:1280000
KS ci ratio: 1.078388e-01	ci left: 9.756278e-04	ci right 1.087587e-03	k: 1319	n:1280000
CNTNAP2   1280000 perm   958 sec   (1336 perm/sec)   p_kst 1.030469e-03   p_cons 4.453711e-01   p_joint 2.636719e-03

Joint ci ratio: 6.670737e-02	ci left: 2.580691e-03	ci right 2.759538e-03	k: 3443	n:1290000
Cons ci ratio: 3.851289e-03	ci left: 4.445413e-01	ci right 4.462574e-01	k: 574565	n:1290000
KS ci ratio: 1.070706e-01	ci left: 9.823978e-04	ci right 1.094280e-03	k: 1338	n:1290000
CNTNAP2   1290000 perm   970 sec   (1330 perm/sec)   p_kst 1.037209e-03   p_cons 4.453992e-01   p_joint 2.668992e-03

Joint ci ratio: 6.641863e-02	ci left: 2.583532e-03	ci right 2.761772e-03	k: 3473	n:1300000
Cons ci ratio: 3.836567e-03	ci left: 4.445292e-01	ci right 4.462387e-01	k: 578999	n:1300000
KS ci ratio: 1.065150e-01	ci left: 9.853226e-04	ci right 1.096920e-03	k: 1352	n:1300000
CNTNAP2   1300000 perm   983 sec   (1323 perm/sec)   p_kst 1.040000e-03   p_cons 4.453838e-01   p_joint 2.671538e-03

Joint ci ratio: 6.639058e-02	ci left: 2.566062e-03	ci right 2.743019e-03	k: 3476	n:1310000
Cons ci ratio: 3.821783e-03	ci left: 4.445471e-01	ci right 4.462501e-01	k: 583472	n:1310000
KS ci ratio: 1.063190e-01	ci left: 9.815161e-04	ci right 1.092465e-03	k: 1357	n:1310000
CNTNAP2   1310000 perm   995 sec   (1317 perm/sec)   p_kst 1.035878e-03   p_cons 4.453985e-01   p_joint 2.653435e-03

Joint ci ratio: 6.611537e-02	ci left: 2.568228e-03	ci right 2.744572e-03	k: 3505	n:1320000
Cons ci ratio: 3.807787e-03	ci left: 4.444845e-01	ci right 4.461809e-01	k: 587839	n:1320000
KS ci ratio: 1.058523e-01	ci left: 9.829301e-04	ci right 1.093520e-03	k: 1369	n:1320000
CNTNAP2   1320000 perm   1007 sec   (1310 perm/sec)   p_kst 1.037121e-03   p_cons 4.453326e-01   p_joint 2.655303e-03

Joint ci ratio: 6.737027e-02	ci left: 2.453539e-03	ci right 2.625330e-03	k: 3376	n:1330000
Cons ci ratio: 3.793522e-03	ci left: 4.444776e-01	ci right 4.461677e-01	k: 592279	n:1330000
KS ci ratio: 1.055063e-01	ci left: 9.821277e-04	ci right 1.092244e-03	k: 1378	n:1330000
CNTNAP2   1330000 perm   1020 sec   (1304 perm/sec)   p_kst 1.036090e-03   p_cons 4.453226e-01   p_joint 2.538346e-03

Joint ci ratio: 6.730102e-02	ci left: 2.440364e-03	ci right 2.611051e-03	k: 3383	n:1340000
Cons ci ratio: 3.779216e-03	ci left: 4.444971e-01	ci right 4.461808e-01	k: 596754	n:1340000
KS ci ratio: 1.051259e-01	ci left: 9.820645e-04	ci right 1.091752e-03	k: 1388	n:1340000
CNTNAP2   1340000 perm   1032 sec   (1298 perm/sec)   p_kst 1.035821e-03   p_cons 4.453388e-01   p_joint 2.524627e-03

Joint ci ratio: 6.703409e-02	ci left: 2.441952e-03	ci right 2.612045e-03	k: 3410	n:1350000
Cons ci ratio: 3.765195e-03	ci left: 4.444999e-01	ci right 4.461774e-01	k: 601207	n:1350000
KS ci ratio: 1.045254e-01	ci left: 9.863312e-04	ci right 1.095828e-03	k: 1404	n:1350000
CNTNAP2   1350000 perm   1045 sec   (1292 perm/sec)   p_kst 1.040000e-03   p_cons 4.453385e-01   p_joint 2.525926e-03

Joint ci ratio: 6.758315e-02	ci left: 2.384233e-03	ci right 2.551720e-03	k: 3355	n:1360000
Cons ci ratio: 3.751586e-03	ci left: 4.444689e-01	ci right 4.461402e-01	k: 605614	n:1360000
KS ci ratio: 1.041922e-01	ci left: 9.855237e-04	ci right 1.094560e-03	k: 1413	n:1360000
CNTNAP2   1360000 perm   1058 sec   (1286 perm/sec)   p_kst 1.038971e-03   p_cons 4.453044e-01   p_joint 2.466912e-03

Joint ci ratio: 6.727300e-02	ci left: 2.389077e-03	ci right 2.556103e-03	k: 3386	n:1370000
Cons ci ratio: 3.737604e-03	ci left: 4.445069e-01	ci right 4.461721e-01	k: 610115	n:1370000
KS ci ratio: 1.036075e-01	ci left: 9.897055e-04	ci right 1.098553e-03	k: 1429	n:1370000
CNTNAP2   1370000 perm   1071 sec   (1279 perm/sec)   p_kst 1.043066e-03   p_cons 4.453394e-01   p_joint 2.471533e-03

Joint ci ratio: 6.707537e-02	ci left: 2.386014e-03	ci right 2.552317e-03	k: 3406	n:1380000
Cons ci ratio: 3.724018e-03	ci left: 4.445126e-01	ci right 4.461717e-01	k: 614572	n:1380000
KS ci ratio: 1.033190e-01	ci left: 9.881808e-04	ci right 1.096539e-03	k: 1437	n:1380000
CNTNAP2   1380000 perm   1084 sec   (1273 perm/sec)   p_kst 1.041304e-03   p_cons 4.453420e-01   p_joint 2.468116e-03

Joint ci ratio: 6.699716e-02	ci left: 2.374507e-03	ci right 2.539808e-03	k: 3414	n:1390000
Cons ci ratio: 3.710789e-03	ci left: 4.444901e-01	ci right 4.461432e-01	k: 618990	n:1390000
KS ci ratio: 1.029260e-01	ci left: 9.887812e-04	ci right 1.096768e-03	k: 1448	n:1390000
CNTNAP2   1390000 perm   1097 sec   (1267 perm/sec)   p_kst 1.041727e-03   p_cons 4.453165e-01   p_joint 2.456115e-03

Joint ci ratio: 6.681169e-02	ci left: 2.370890e-03	ci right 2.535465e-03	k: 3433	n:1400000
Cons ci ratio: 3.697562e-03	ci left: 4.444865e-01	ci right 4.461337e-01	k: 623434	n:1400000
KS ci ratio: 1.026784e-01	ci left: 9.865898e-04	ci right 1.094063e-03	k: 1455	n:1400000
CNTNAP2   1400000 perm   1110 sec   (1261 perm/sec)   p_kst 1.039286e-03   p_cons 4.453100e-01   p_joint 2.452143e-03

Joint ci ratio: 6.656016e-02	ci left: 2.372208e-03	ci right 2.536230e-03	k: 3459	n:1410000
Cons ci ratio: 3.684628e-03	ci left: 4.444624e-01	ci right 4.461038e-01	k: 627849	n:1410000
KS ci ratio: 1.023277e-01	ci left: 9.865031e-04	ci right 1.093578e-03	k: 1465	n:1410000
CNTNAP2   1410000 perm   1123 sec   (1255 perm/sec)   p_kst 1.039007e-03   p_cons 4.452830e-01   p_joint 2.453191e-03

Joint ci ratio: 6.634007e-02	ci left: 2.371430e-03	ci right 2.534835e-03	k: 3482	n:1420000
Cons ci ratio: 3.671536e-03	ci left: 4.444781e-01	ci right 4.461137e-01	k: 632320	n:1420000
KS ci ratio: 1.021191e-01	ci left: 9.836732e-04	ci right 1.090210e-03	k: 1471	n:1420000
CNTNAP2   1420000 perm   1136 sec   (1250 perm/sec)   p_kst 1.035915e-03   p_cons 4.452958e-01   p_joint 2.452113e-03

Joint ci ratio: 6.686223e-02	ci left: 2.317711e-03	ci right 2.478721e-03	k: 3428	n:1430000
Cons ci ratio: 3.658541e-03	ci left: 4.444992e-01	ci right 4.461290e-01	k: 636799	n:1430000
KS ci ratio: 1.016710e-01	ci left: 9.856536e-04	ci right 1.091908e-03	k: 1484	n:1430000
CNTNAP2   1430000 perm   1149 sec   (1244 perm/sec)   p_kst 1.037762e-03   p_cons 4.453140e-01   p_joint 2.397203e-03

Joint ci ratio: 6.685302e-02	ci left: 2.302298e-03	ci right 2.462214e-03	k: 3429	n:1440000
Cons ci ratio: 3.645432e-03	ci left: 4.445540e-01	ci right 4.461782e-01	k: 641327	n:1440000
KS ci ratio: 1.013983e-01	ci left: 9.842232e-04	ci right 1.090022e-03	k: 1492	n:1440000
CNTNAP2   1440000 perm   1163 sec   (1238 perm/sec)   p_kst 1.036111e-03   p_cons 4.453660e-01   p_joint 2.381250e-03

Joint ci ratio: 6.663969e-02	ci left: 2.301339e-03	ci right 2.460659e-03	k: 3451	n:1450000
Cons ci ratio: 3.632676e-03	ci left: 4.445791e-01	ci right 4.461977e-01	k: 645813	n:1450000
KS ci ratio: 1.011278e-01	ci left: 9.828130e-04	ci right 1.088162e-03	k: 1500	n:1450000
CNTNAP2   1450000 perm   1176 sec   (1233 perm/sec)   p_kst 1.034483e-03   p_cons 4.453883e-01   p_joint 2.380000e-03

Joint ci ratio: 6.640923e-02	ci left: 2.301742e-03	ci right 2.460517e-03	k: 3475	n:1460000
Cons ci ratio: 3.620645e-03	ci left: 4.445230e-01	ci right 4.461361e-01	k: 650181	n:1460000
KS ci ratio: 1.008260e-01	ci left: 9.820901e-04	ci right 1.087029e-03	k: 1509	n:1460000
CNTNAP2   1460000 perm   1190 sec   (1227 perm/sec)   p_kst 1.033562e-03   p_cons 4.453295e-01   p_joint 2.380137e-03

Joint ci ratio: 6.634284e-02	ci left: 2.290766e-03	ci right 2.448620e-03	k: 3482	n:1470000
Cons ci ratio: 3.608450e-03	ci left: 4.445065e-01	ci right 4.461141e-01	k: 654606	n:1470000
KS ci ratio: 1.005601e-01	ci left: 9.807143e-04	ci right 1.085213e-03	k: 1517	n:1470000
CNTNAP2   1470000 perm   1203 sec   (1222 perm/sec)   p_kst 1.031973e-03   p_cons 4.453102e-01   p_joint 2.368707e-03

Joint ci ratio: 6.633383e-02	ci left: 2.275952e-03	ci right 2.432763e-03	k: 3483	n:1480000
Cons ci ratio: 3.596411e-03	ci left: 4.444856e-01	ci right 4.460876e-01	k: 659024	n:1480000
KS ci ratio: 1.001977e-01	ci left: 9.813337e-04	ci right 1.085500e-03	k: 1528	n:1480000
CNTNAP2   1480000 perm   1217 sec   (1216 perm/sec)   p_kst 1.032432e-03   p_cons 4.452865e-01   p_joint 2.353378e-03

Joint ci ratio: 6.632481e-02	ci left: 2.261336e-03	ci right 2.417118e-03	k: 3484	n:1490000
Cons ci ratio: 3.584239e-03	ci left: 4.444997e-01	ci right 4.460964e-01	k: 663494	n:1490000
KS ci ratio: 9.987165e-02	ci left: 9.812911e-04	ci right 1.085094e-03	k: 1538	n:1490000
CNTNAP2   1490000 perm   1231 sec   (1211 perm/sec)   p_kst 1.032215e-03   p_cons 4.452980e-01   p_joint 2.338255e-03

Outputting figure to mutsig2_images.part000000000040/CNTNAP2.30_4092_1490000_0.0010322_0.4453_0.0023383.png
                gene_name: CNTNAP2
               theta_stop: 0.100 
                    nperm: 1490000 
                     p_ks: 0.0010 
        ci_ks_bounds_left: 0.00098 
       ci_ks_bounds_right: 0.0011 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.0023 
     ci_joint_bounds_left: 0.0023 
    ci_joint_bounds_right: 0.0024 

Current progress: 4 percent done.
CNGB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.471135e-02	ci left: 7.066461e-01	ci right 7.244281e-01	k: 7156	n:10000
KS ci ratio: 1.824899e-02	ci left: 8.142578e-01	ci right 8.293542e-01	k: 8219	n:10000
CNGB3   10000 perm   2 sec   (4209 perm/sec)   p_kst 8.219000e-01   p_cons 7.156000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000040/CNGB3.20_2502_10000_0.8219_0.7156_1.png
                gene_name: CNGB3
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 6 percent done.
CNTNAP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.295844e-02	ci left: 5.760717e-01	ci right 5.954783e-01	k: 5858	n:10000
Cons ci ratio: 8.886211e-03	ci left: 9.467940e-01	ci right 9.553408e-01	k: 9512	n:10000
KS ci ratio: 5.925716e-02	ci left: 2.952901e-01	ci right 3.134240e-01	k: 3043	n:10000
CNTNAP4   10000 perm   2 sec   (4039 perm/sec)   p_kst 3.043000e-01   p_cons 9.512000e-01   p_joint 5.858000e-01

Outputting figure to mutsig2_images.part000000000040/CNTNAP4.20_4036_10000_0.3043_0.9512_0.5858.png
                gene_name: CNTNAP4
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 8 percent done.
CNTN5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.439572e-02	ci left: 4.282451e-01	ci right 4.477911e-01	k: 4380	n:10000
Cons ci ratio: 6.884996e-02	ci left: 2.362992e-01	ci right 2.532497e-01	k: 2447	n:10000
KS ci ratio: 5.039228e-02	ci left: 3.673888e-01	ci right 3.864829e-01	k: 3769	n:10000
CNTN5   10000 perm   2 sec   (4433 perm/sec)   p_kst 3.769000e-01   p_cons 2.447000e-01   p_joint 4.380000e-01

Outputting figure to mutsig2_images.part000000000040/CNTN5.16_3395_10000_0.3769_0.2447_0.438.png
                gene_name: CNTN5
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 9 percent done.
CMYA5
Processing conservation and coverage...
81% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.323371e-02	ci left: 2.144784e-01	ci right 2.308835e-01	k: 2226	n:10000
Cons ci ratio: 4.782131e-02	ci left: 3.921708e-01	ci right 4.114864e-01	k: 4018	n:10000
KS ci ratio: 8.386407e-02	ci left: 1.717274e-01	ci right 1.868599e-01	k: 1792	n:10000
CMYA5   10000 perm   3 sec   (3046 perm/sec)   p_kst 1.792000e-01   p_cons 4.018000e-01   p_joint 2.226000e-01

Outputting figure to mutsig2_images.part000000000040/CMYA5.13_12262_10000_0.1792_0.4018_0.2226.png
                gene_name: CMYA5
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 11 percent done.
CNKSR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.651998e-01	ci left: 4.888186e-02	ci right 5.778061e-02	k: 532	n:10000
Cons ci ratio: 3.017006e-01	ci left: 1.409482e-02	ci right 1.919237e-02	k: 165	n:10000
KS ci ratio: 5.378673e-02	ci left: 3.374673e-01	ci right 3.562220e-01	k: 3468	n:10000
CNKSR2   10000 perm   2 sec   (4301 perm/sec)   p_kst 3.468000e-01   p_cons 1.650000e-02   p_joint 5.320000e-02

Joint ci ratio: 1.018944e-01	ci left: 6.537877e-02	ci right 7.244718e-02	k: 1377	n:20000
Cons ci ratio: 1.975832e-01	ci left: 1.739087e-02	ci right 2.125067e-02	k: 385	n:20000
KS ci ratio: 3.782400e-02	ci left: 3.427398e-01	ci right 3.560040e-01	k: 6987	n:20000
CNKSR2   20000 perm   5 sec   (3946 perm/sec)   p_kst 3.493500e-01   p_cons 1.925000e-02   p_joint 6.885000e-02

Joint ci ratio: 9.330341e-02	ci left: 5.296827e-02	ci right 5.818489e-02	k: 1666	n:30000
Cons ci ratio: 1.606216e-01	ci left: 1.790127e-02	ci right 2.105943e-02	k: 583	n:30000
KS ci ratio: 3.023964e-02	ci left: 3.535689e-01	ci right 3.644584e-01	k: 10770	n:30000
CNKSR2   30000 perm   8 sec   (3803 perm/sec)   p_kst 3.590000e-01   p_cons 1.943333e-02   p_joint 5.553333e-02

Joint ci ratio: 7.654854e-02	ci left: 5.916504e-02	ci right 6.389887e-02	k: 2460	n:40000
Cons ci ratio: 1.436538e-01	ci left: 1.696081e-02	ci right 1.960978e-02	k: 730	n:40000
KS ci ratio: 2.622293e-02	ci left: 3.536986e-01	ci right 3.631220e-01	k: 14336	n:40000
CNKSR2   40000 perm   11 sec   (3695 perm/sec)   p_kst 3.584000e-01   p_cons 1.825000e-02   p_joint 6.150000e-02

Joint ci ratio: 6.623816e-02	ci left: 6.328763e-02	ci right 6.764299e-02	k: 3272	n:50000
Cons ci ratio: 1.184910e-01	ci left: 2.014940e-02	ci right 2.270659e-02	k: 1070	n:50000
KS ci ratio: 2.361369e-02	ci left: 3.511034e-01	ci right 3.595134e-01	k: 17765	n:50000
CNKSR2   50000 perm   14 sec   (3619 perm/sec)   p_kst 3.553000e-01   p_cons 2.140000e-02   p_joint 6.544000e-02

Joint ci ratio: 7.199479e-02	ci left: 4.538570e-02	ci right 4.879161e-02	k: 2824	n:60000
Cons ci ratio: 1.076632e-01	ci left: 2.045164e-02	ci right 2.279495e-02	k: 1296	n:60000
KS ci ratio: 2.165083e-02	ci left: 3.494742e-01	ci right 3.571400e-01	k: 21198	n:60000
CNKSR2   60000 perm   17 sec   (3538 perm/sec)   p_kst 3.533000e-01   p_cons 2.160000e-02   p_joint 4.706667e-02

Joint ci ratio: 6.932100e-02	ci left: 4.216931e-02	ci right 4.521151e-02	k: 3057	n:70000
Cons ci ratio: 1.139870e-01	ci left: 1.566644e-02	ci right 1.757393e-02	k: 1162	n:70000
KS ci ratio: 2.003611e-02	ci left: 3.499576e-01	ci right 3.570546e-01	k: 24745	n:70000
CNKSR2   70000 perm   20 sec   (3494 perm/sec)   p_kst 3.535000e-01   p_cons 1.660000e-02   p_joint 4.367143e-02

Joint ci ratio: 6.207895e-02	ci left: 4.599929e-02	ci right 4.895864e-02	k: 3797	n:80000
Cons ci ratio: 1.072066e-01	ci left: 1.555556e-02	ci right 1.732976e-02	k: 1314	n:80000
KS ci ratio: 1.874572e-02	ci left: 3.500991e-01	ci right 3.567365e-01	k: 28273	n:80000
CNKSR2   80000 perm   23 sec   (3451 perm/sec)   p_kst 3.534125e-01   p_cons 1.642500e-02   p_joint 4.746250e-02

Joint ci ratio: 5.922127e-02	ci left: 4.504578e-02	ci right 4.780578e-02	k: 4177	n:90000
Cons ci ratio: 1.012277e-01	ci left: 1.555862e-02	ci right 1.722832e-02	k: 1474	n:90000
KS ci ratio: 1.766687e-02	ci left: 3.504647e-01	ci right 3.567225e-01	k: 31823	n:90000
CNKSR2   90000 perm   26 sec   (3409 perm/sec)   p_kst 3.535889e-01   p_cons 1.637778e-02   p_joint 4.641111e-02

Joint ci ratio: 5.556511e-02	ci left: 4.609112e-02	ci right 4.873521e-02	k: 4740	n:100000
Cons ci ratio: 9.602979e-02	ci left: 1.560233e-02	ci right 1.718590e-02	k: 1638	n:100000
KS ci ratio: 1.675843e-02	ci left: 3.506760e-01	ci right 3.566124e-01	k: 35364	n:100000
CNKSR2   100000 perm   30 sec   (3369 perm/sec)   p_kst 3.536400e-01   p_cons 1.638000e-02   p_joint 4.740000e-02

Outputting figure to mutsig2_images.part000000000040/CNKSR2.13_3202_100000_0.35364_0.01638_0.0474.png
                gene_name: CNKSR2
               theta_stop: 0.096 
                    nperm: 100000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.016 
      ci_cons_bounds_left: 0.016 
     ci_cons_bounds_right: 0.017 
                  p_joint: 0.047 
     ci_joint_bounds_left: 0.046 
    ci_joint_bounds_right: 0.049 

Current progress: 13 percent done.
CNTN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.138797e-02	ci left: 7.622312e-01	ci right 7.788109e-01	k: 7706	n:10000
Cons ci ratio: 2.452330e-02	ci left: 7.097745e-01	ci right 7.274979e-01	k: 7187	n:10000
KS ci ratio: 4.250783e-02	ci left: 4.496954e-01	ci right 4.693282e-01	k: 4595	n:10000
CNTN1   10000 perm   2 sec   (4791 perm/sec)   p_kst 4.595000e-01   p_cons 7.187000e-01   p_joint 7.706000e-01

Outputting figure to mutsig2_images.part000000000040/CNTN1.12_3149_10000_0.4595_0.7187_0.7706.png
                gene_name: CNTN1
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 15 percent done.
CLVS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.784894e-02	ci left: 8.207633e-01	ci right 8.356450e-01	k: 8283	n:10000
Cons ci ratio: 3.659946e-02	ci left: 5.243644e-01	ci right 5.440157e-01	k: 5342	n:10000
KS ci ratio: 1.320071e-02	ci left: 8.921069e-01	ci right 9.040601e-01	k: 8982	n:10000
CLVS2   10000 perm   2 sec   (5330 perm/sec)   p_kst 8.982000e-01   p_cons 5.342000e-01   p_joint 8.283000e-01

Outputting figure to mutsig2_images.part000000000040/CLVS2.11_1004_10000_0.8982_0.5342_0.8283.png
                gene_name: CLVS2
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 17 percent done.
CNTN6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.457788e-02	ci left: 7.088662e-01	ci right 7.266068e-01	k: 7178	n:10000
Cons ci ratio: 4.254207e-02	ci left: 4.492961e-01	ci right 4.689277e-01	k: 4591	n:10000
KS ci ratio: 1.939847e-02	ci left: 7.953712e-01	ci right 8.110517e-01	k: 8033	n:10000
CNTN6   10000 perm   2 sec   (4608 perm/sec)   p_kst 8.033000e-01   p_cons 4.591000e-01   p_joint 7.178000e-01

Outputting figure to mutsig2_images.part000000000040/CNTN6.11_3175_10000_0.8033_0.4591_0.7178.png
                gene_name: CNTN6
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 19 percent done.
CNTN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.971484e-02	ci left: 4.835542e-01	ci right 5.032497e-01	k: 4934	n:10000
Cons ci ratio: 2.808310e-02	ci left: 6.514250e-01	ci right 6.700813e-01	k: 6608	n:10000
KS ci ratio: 6.163475e-02	ci left: 2.790384e-01	ci right 2.968853e-01	k: 2879	n:10000
CNTN3   10000 perm   2 sec   (4748 perm/sec)   p_kst 2.879000e-01   p_cons 6.608000e-01   p_joint 4.934000e-01

Outputting figure to mutsig2_images.part000000000040/CNTN3.10_3175_10000_0.2879_0.6608_0.4934.png
                gene_name: CNTN3
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 21 percent done.
CNGA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.353110e-02	ci left: 2.130972e-01	ci right 2.294655e-01	k: 2212	n:10000
Cons ci ratio: 8.928483e-02	ci left: 1.543368e-01	ci right 1.688609e-01	k: 1615	n:10000
KS ci ratio: 8.467069e-02	ci left: 1.689744e-01	ci right 1.840145e-01	k: 1764	n:10000
CNGA2   10000 perm   2 sec   (5023 perm/sec)   p_kst 1.764000e-01   p_cons 1.615000e-01   p_joint 2.212000e-01

Outputting figure to mutsig2_images.part000000000040/CNGA2.9_2019_10000_0.1764_0.1615_0.2212.png
                gene_name: CNGA2
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 23 percent done.
CNOT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.139383e-02	ci left: 3.582391e-01	ci right 3.772380e-01	k: 3677	n:10000
Cons ci ratio: 9.457605e-02	ci left: 1.396231e-01	ci right 1.535834e-01	k: 1465	n:10000
KS ci ratio: 4.423380e-02	ci left: 4.300402e-01	ci right 4.495949e-01	k: 4398	n:10000
CNOT1   10000 perm   3 sec   (3767 perm/sec)   p_kst 4.398000e-01   p_cons 1.465000e-01   p_joint 3.677000e-01

Outputting figure to mutsig2_images.part000000000040/CNOT1.8_7545_10000_0.4398_0.1465_0.3677.png
                gene_name: CNOT1
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 25 percent done.
CNOT4
Processing conservation and coverage...
Processing mutations... 
Skipping 3 mutations outside exons of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.520369e-02	ci left: 6.984744e-01	ci right 7.164046e-01	k: 7075	n:10000
Cons ci ratio: 3.474272e-02	ci left: 5.502047e-01	ci right 5.697603e-01	k: 5600	n:10000
KS ci ratio: 3.214337e-02	ci left: 5.882125e-01	ci right 6.075305e-01	k: 5979	n:10000
CNOT4   10000 perm   2 sec   (5158 perm/sec)   p_kst 5.979000e-01   p_cons 5.600000e-01   p_joint 7.075000e-01

Outputting figure to mutsig2_images.part000000000040/CNOT4.5_2065_10000_0.5979_0.56_0.7075.png
                gene_name: CNOT4
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 26 percent done.
CNTN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.904187e-02	ci left: 8.012576e-01	ci right 8.167620e-01	k: 8091	n:10000
Cons ci ratio: 9.751082e-03	ci left: 9.370311e-01	ci right 9.463095e-01	k: 9418	n:10000
KS ci ratio: 3.581985e-02	ci left: 5.350779e-01	ci right 5.546960e-01	k: 5449	n:10000
CNTN4   10000 perm   2 sec   (5067 perm/sec)   p_kst 5.449000e-01   p_cons 9.418000e-01   p_joint 8.091000e-01

Outputting figure to mutsig2_images.part000000000040/CNTN4.7_3169_10000_0.5449_0.9418_0.8091.png
                gene_name: CNTN4
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 28 percent done.
CNBD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.783125e-02	ci left: 3.920712e-01	ci right 4.113861e-01	k: 4017	n:10000
Cons ci ratio: 9.360549e-02	ci left: 1.421718e-01	ci right 1.562332e-01	k: 1491	n:10000
KS ci ratio: 2.260159e-02	ci left: 7.418966e-01	ci right 7.589573e-01	k: 7505	n:10000
CNBD1   10000 perm   2 sec   (5604 perm/sec)   p_kst 7.505000e-01   p_cons 1.491000e-01   p_joint 4.017000e-01

Outputting figure to mutsig2_images.part000000000040/CNBD1.6_1355_10000_0.7505_0.1491_0.4017.png
                gene_name: CNBD1
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 30 percent done.
CNGA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.742002e-02	ci left: 3.086781e-01	ci right 3.270281e-01	k: 3178	n:10000
Cons ci ratio: 6.132066e-02	ci left: 2.811186e-01	ci right 2.990038e-01	k: 2900	n:10000
KS ci ratio: 5.607094e-02	ci left: 3.189980e-01	ci right 3.375022e-01	k: 3282	n:10000
CNGA3   10000 perm   2 sec   (6098 perm/sec)   p_kst 3.282000e-01   p_cons 2.900000e-01   p_joint 3.178000e-01

Outputting figure to mutsig2_images.part000000000040/CNGA3.6_2113_10000_0.3282_0.29_0.3178.png
                gene_name: CNGA3
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 32 percent done.
CNGA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.360087e-02	ci left: 5.666442e-01	ci right 5.861113e-01	k: 5764	n:10000
Cons ci ratio: 5.416871e-02	ci left: 3.342886e-01	ci right 3.530026e-01	k: 3436	n:10000
KS ci ratio: 2.144239e-02	ci left: 7.613202e-01	ci right 7.779225e-01	k: 7697	n:10000
CNGA4   10000 perm   2 sec   (5660 perm/sec)   p_kst 7.697000e-01   p_cons 3.436000e-01   p_joint 5.764000e-01

Outputting figure to mutsig2_images.part000000000040/CNGA4.6_1752_10000_0.7697_0.3436_0.5764.png
                gene_name: CNGA4
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 34 percent done.
CNR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.401317e-02	ci left: 1.410934e-01	ci right 1.551123e-01	k: 1480	n:10000
Cons ci ratio: 3.572608e-02	ci left: 5.363798e-01	ci right 5.559932e-01	k: 5462	n:10000
KS ci ratio: 1.812101e-01	ci left: 4.063733e-02	ci right 4.883054e-02	k: 446	n:10000
CNR1   10000 perm   2 sec   (5430 perm/sec)   p_kst 4.460000e-02   p_cons 5.462000e-01   p_joint 1.480000e-01

Joint ci ratio: 8.173122e-02	ci left: 9.891852e-02	ci right 1.073972e-01	k: 2062	n:20000
Cons ci ratio: 2.530716e-02	ci left: 5.384179e-01	ci right 5.522689e-01	k: 10907	n:20000
KS ci ratio: 1.258701e-01	ci left: 4.333189e-02	ci right 4.920094e-02	k: 924	n:20000
CNR1   20000 perm   4 sec   (4894 perm/sec)   p_kst 4.620000e-02   p_cons 5.453500e-01   p_joint 1.031000e-01

Joint ci ratio: 7.228873e-02	ci left: 8.603062e-02	ci right 9.251584e-02	k: 2677	n:30000
Cons ci ratio: 2.064492e-02	ci left: 5.401450e-01	ci right 5.514461e-01	k: 16374	n:30000
KS ci ratio: 1.024447e-01	ci left: 4.414462e-02	ci right 4.894369e-02	k: 1395	n:30000
CNR1   30000 perm   6 sec   (4705 perm/sec)   p_kst 4.650000e-02   p_cons 5.458000e-01   p_joint 8.923333e-02

Joint ci ratio: 6.979258e-02	ci left: 7.054306e-02	ci right 7.566912e-02	k: 2923	n:40000
Cons ci ratio: 1.747369e-02	ci left: 5.522657e-01	ci right 5.620260e-01	k: 22286	n:40000
KS ci ratio: 8.966727e-02	ci left: 4.355169e-02	ci right 4.766461e-02	k: 1823	n:40000
CNR1   40000 perm   9 sec   (4576 perm/sec)   p_kst 4.557500e-02   p_cons 5.571500e-01   p_joint 7.307500e-02

Outputting figure to mutsig2_images.part000000000040/CNR1.5_1423_40000_0.045575_0.55715_0.073075.png
                gene_name: CNR1
               theta_stop: 0.090 
                    nperm: 40000 
                     p_ks: 0.046 
        ci_ks_bounds_left: 0.044 
       ci_ks_bounds_right: 0.048 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.073 
     ci_joint_bounds_left: 0.071 
    ci_joint_bounds_right: 0.076 

Current progress: 36 percent done.
CNTROB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.443362e-02	ci left: 5.546142e-01	ci right 5.741482e-01	k: 5644	n:10000
Cons ci ratio: 3.516050e-02	ci left: 5.442931e-01	ci right 5.638753e-01	k: 5541	n:10000
KS ci ratio: 4.826174e-02	ci left: 3.877898e-01	ci right 4.070700e-01	k: 3974	n:10000
CNTROB   10000 perm   2 sec   (5074 perm/sec)   p_kst 3.974000e-01   p_cons 5.541000e-01   p_joint 5.644000e-01

Outputting figure to mutsig2_images.part000000000040/CNTROB.5_2854_10000_0.3974_0.5541_0.5644.png
                gene_name: CNTROB
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 38 percent done.
COG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.583828e-02	ci left: 6.879873e-01	ci right 7.060978e-01	k: 6971	n:10000
Cons ci ratio: 1.870845e-02	ci left: 8.067404e-01	ci right 8.220760e-01	k: 8145	n:10000
KS ci ratio: 3.201653e-02	ci left: 5.901194e-01	ci right 6.094224e-01	k: 5998	n:10000
COG2   10000 perm   2 sec   (5441 perm/sec)   p_kst 5.998000e-01   p_cons 8.145000e-01   p_joint 6.971000e-01

Outputting figure to mutsig2_images.part000000000040/COG2.5_2289_10000_0.5998_0.8145_0.6971.png
                gene_name: COG2
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 40 percent done.
CLVS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.129460e-02	ci left: 6.010623e-01	ci right 6.202732e-01	k: 6107	n:10000
Cons ci ratio: 6.197770e-03	ci left: 9.724899e-01	ci right 9.786288e-01	k: 9757	n:10000
KS ci ratio: 4.050932e-02	ci left: 4.736615e-01	ci right 4.933481e-01	k: 4835	n:10000
CLVS1   10000 perm   2 sec   (6026 perm/sec)   p_kst 4.835000e-01   p_cons 9.757000e-01   p_joint 6.107000e-01

Outputting figure to mutsig2_images.part000000000040/CLVS1.4_1085_10000_0.4835_0.9757_0.6107.png
                gene_name: CLVS1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 42 percent done.
CMPK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.726867e-01	ci left: 4.475507e-02	ci right 5.331009e-02	k: 489	n:10000
Cons ci ratio: 2.413489e-01	ci left: 2.259324e-02	ci right 2.888717e-02	k: 256	n:10000
KS ci ratio: 1.038522e-01	ci left: 1.181869e-01	ci right 1.312326e-01	k: 1246	n:10000
CMPK2   10000 perm   2 sec   (5858 perm/sec)   p_kst 1.246000e-01   p_cons 2.560000e-02   p_joint 4.890000e-02

Joint ci ratio: 1.155622e-01	ci left: 5.124802e-02	ci right 5.758231e-02	k: 1087	n:20000
Cons ci ratio: 1.628626e-01	ci left: 2.585348e-02	ci right 3.048506e-02	k: 562	n:20000
KS ci ratio: 7.558075e-02	ci left: 1.140515e-01	ci right 1.230598e-01	k: 2370	n:20000
CMPK2   20000 perm   4 sec   (5248 perm/sec)   p_kst 1.185000e-01   p_cons 2.810000e-02   p_joint 5.435000e-02

Joint ci ratio: 8.777750e-02	ci left: 5.959078e-02	ci right 6.509435e-02	k: 1869	n:30000
Cons ci ratio: 1.334255e-01	ci left: 2.609784e-02	ci right 2.986098e-02	k: 838	n:30000
KS ci ratio: 6.166755e-02	ci left: 1.150275e-01	ci right 1.223798e-01	k: 3560	n:30000
CMPK2   30000 perm   6 sec   (5008 perm/sec)   p_kst 1.186667e-01   p_cons 2.793333e-02   p_joint 6.230000e-02

Joint ci ratio: 6.503001e-02	ci left: 8.056053e-02	ci right 8.600015e-02	k: 3330	n:40000
Cons ci ratio: 1.157456e-01	ci left: 2.625936e-02	ci right 2.950967e-02	k: 1114	n:40000
KS ci ratio: 5.352100e-02	ci left: 1.150762e-01	ci right 1.214294e-01	k: 4729	n:40000
CMPK2   40000 perm   8 sec   (4846 perm/sec)   p_kst 1.182250e-01   p_cons 2.785000e-02   p_joint 8.325000e-02

Joint ci ratio: 6.096131e-02	ci left: 7.404683e-02	ci right 7.872249e-02	k: 3818	n:50000
Cons ci ratio: 1.033263e-01	ci left: 2.653244e-02	ci right 2.944271e-02	k: 1398	n:50000
KS ci ratio: 4.799279e-02	ci left: 1.148876e-01	ci right 1.205568e-01	k: 5885	n:50000
CMPK2   50000 perm   11 sec   (4727 perm/sec)   p_kst 1.177000e-01   p_cons 2.796000e-02   p_joint 7.636000e-02

Joint ci ratio: 5.773463e-02	ci left: 6.928633e-02	ci right 7.342191e-02	k: 4280	n:60000
Cons ci ratio: 9.136504e-02	ci left: 2.840502e-02	ci right 3.114072e-02	k: 1785	n:60000
KS ci ratio: 4.366496e-02	ci left: 1.158250e-01	ci right 1.210119e-01	k: 7104	n:60000
CMPK2   60000 perm   13 sec   (4611 perm/sec)   p_kst 1.184000e-01   p_cons 2.975000e-02   p_joint 7.133333e-02

Outputting figure to mutsig2_images.part000000000040/CMPK2.4_1370_60000_0.1184_0.02975_0.071333.png
                gene_name: CMPK2
               theta_stop: 0.091 
                    nperm: 60000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.030 
      ci_cons_bounds_left: 0.028 
     ci_cons_bounds_right: 0.031 
                  p_joint: 0.071 
     ci_joint_bounds_left: 0.069 
    ci_joint_bounds_right: 0.073 

Current progress: 43 percent done.
CNGA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.200103e-01	ci left: 9.058624e-02	ci right 1.022501e-01	k: 963	n:10000
Cons ci ratio: 3.350785e-01	ci left: 1.123901e-02	ci right 1.585081e-02	k: 134	n:10000
KS ci ratio: 6.090642e-02	ci left: 2.838926e-01	ci right 3.018282e-01	k: 2928	n:10000
CNGA1   10000 perm   2 sec   (5744 perm/sec)   p_kst 2.928000e-01   p_cons 1.340000e-02   p_joint 9.630000e-02

Joint ci ratio: 7.554461e-02	ci left: 1.141498e-01	ci right 1.231614e-01	k: 2372	n:20000
Cons ci ratio: 2.473661e-01	ci left: 1.086559e-02	ci right 1.397857e-02	k: 247	n:20000
KS ci ratio: 4.320308e-02	ci left: 2.852571e-01	ci right 2.979036e-01	k: 5831	n:20000
CNGA1   20000 perm   4 sec   (5178 perm/sec)   p_kst 2.915500e-01   p_cons 1.235000e-02   p_joint 1.186000e-01

Joint ci ratio: 6.798367e-02	ci left: 9.636481e-02	ci right 1.031796e-01	k: 2992	n:30000
Cons ci ratio: 1.966889e-01	ci left: 1.178058e-02	ci right 1.438165e-02	k: 391	n:30000
KS ci ratio: 3.526099e-02	ci left: 2.865933e-01	ci right 2.969137e-01	k: 8752	n:30000
CNGA1   30000 perm   6 sec   (4946 perm/sec)   p_kst 2.917333e-01   p_cons 1.303333e-02   p_joint 9.973333e-02

Joint ci ratio: 6.507264e-02	ci left: 8.046201e-02	ci right 8.589868e-02	k: 3326	n:40000
Cons ci ratio: 1.719567e-01	ci left: 1.172137e-02	ci right 1.395018e-02	k: 512	n:40000
KS ci ratio: 2.941151e-02	ci left: 3.029794e-01	ci right 3.120486e-01	k: 12300	n:40000
CNGA1   40000 perm   8 sec   (4802 perm/sec)   p_kst 3.075000e-01   p_cons 1.280000e-02   p_joint 8.315000e-02

Joint ci ratio: 5.338437e-02	ci left: 9.473548e-02	ci right 9.995138e-02	k: 4866	n:50000
Cons ci ratio: 1.522769e-01	ci left: 1.208322e-02	ci right 1.409390e-02	k: 653	n:50000
KS ci ratio: 2.628702e-02	ci left: 3.037753e-01	ci right 3.118870e-01	k: 15391	n:50000
CNGA1   50000 perm   11 sec   (4679 perm/sec)   p_kst 3.078200e-01   p_cons 1.306000e-02   p_joint 9.732000e-02

Joint ci ratio: 4.729045e-02	ci left: 1.003149e-01	ci right 1.051903e-01	k: 6164	n:60000
Cons ci ratio: 1.385450e-01	ci left: 1.225376e-02	ci right 1.409377e-02	k: 789	n:60000
KS ci ratio: 2.401112e-02	ci left: 3.038751e-01	ci right 3.112768e-01	k: 18454	n:60000
CNGA1   60000 perm   13 sec   (4580 perm/sec)   p_kst 3.075667e-01   p_cons 1.315000e-02   p_joint 1.027333e-01

Joint ci ratio: 5.234030e-02	ci left: 7.224071e-02	ci right 7.613753e-02	k: 5192	n:70000
Cons ci ratio: 1.371919e-01	ci left: 1.073712e-02	ci right 1.233233e-02	k: 806	n:70000
KS ci ratio: 2.226046e-02	ci left: 3.035698e-01	ci right 3.104177e-01	k: 21489	n:70000
CNGA1   70000 perm   16 sec   (4488 perm/sec)   p_kst 3.069857e-01   p_cons 1.151429e-02   p_joint 7.417143e-02

Joint ci ratio: 3.941185e-02	ci left: 1.078769e-01	ci right 1.122264e-01	k: 8803	n:80000
Cons ci ratio: 1.142570e-01	ci left: 1.367089e-02	ci right 1.533959e-02	k: 1159	n:80000
KS ci ratio: 2.084235e-02	ci left: 3.033933e-01	ci right 3.097958e-01	k: 24527	n:80000
CNGA1   80000 perm   18 sec   (4396 perm/sec)   p_kst 3.065875e-01   p_cons 1.448750e-02   p_joint 1.100375e-01

Joint ci ratio: 4.128644e-02	ci left: 8.916166e-02	ci right 9.293142e-02	k: 8193	n:90000
Cons ci ratio: 1.075972e-01	ci left: 1.375078e-02	ci right 1.532519e-02	k: 1307	n:90000
KS ci ratio: 1.968842e-02	ci left: 3.027574e-01	ci right 3.087885e-01	k: 27519	n:90000
CNGA1   90000 perm   21 sec   (4314 perm/sec)   p_kst 3.057667e-01   p_cons 1.452222e-02   p_joint 9.103333e-02

Joint ci ratio: 3.541581e-02	ci left: 1.072038e-01	ci right 1.110789e-01	k: 10913	n:100000
Cons ci ratio: 1.018743e-01	ci left: 1.384619e-02	ci right 1.534216e-02	k: 1458	n:100000
KS ci ratio: 1.868194e-02	ci left: 3.028253e-01	ci right 3.085460e-01	k: 30568	n:100000
CNGA1   100000 perm   24 sec   (4242 perm/sec)   p_kst 3.056800e-01   p_cons 1.458000e-02   p_joint 1.091300e-01

Joint ci ratio: 3.584447e-02	ci left: 9.630319e-02	ci right 9.982712e-02	k: 10786	n:110000
Cons ci ratio: 9.781288e-02	ci left: 1.368652e-02	ci right 1.510289e-02	k: 1582	n:110000
KS ci ratio: 1.780334e-02	ci left: 3.031776e-01	ci right 3.086327e-01	k: 33649	n:110000
CNGA1   110000 perm   26 sec   (4171 perm/sec)   p_kst 3.059000e-01   p_cons 1.438182e-02   p_joint 9.805455e-02

Outputting figure to mutsig2_images.part000000000040/CNGA1.4_2316_110000_0.3059_0.014382_0.098055.png
                gene_name: CNGA1
               theta_stop: 0.098 
                    nperm: 110000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.014 
      ci_cons_bounds_left: 0.014 
     ci_cons_bounds_right: 0.015 
                  p_joint: 0.098 
     ci_joint_bounds_left: 0.096 
    ci_joint_bounds_right: 0.100 

Current progress: 45 percent done.
CNGB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.421431e-02	ci left: 7.149223e-01	ci right 7.325471e-01	k: 7238	n:10000
Cons ci ratio: 4.212482e-02	ci left: 4.541873e-01	ci right 4.738337e-01	k: 4640	n:10000
KS ci ratio: 3.997784e-02	ci left: 4.802562e-01	ci right 4.999496e-01	k: 4901	n:10000
CNGB1   10000 perm   2 sec   (4922 perm/sec)   p_kst 4.901000e-01   p_cons 4.640000e-01   p_joint 7.238000e-01

Outputting figure to mutsig2_images.part000000000040/CNGB1.4_3914_10000_0.4901_0.464_0.7238.png
                gene_name: CNGB1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 47 percent done.
CNST
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.892855e-02	ci left: 4.935506e-01	ci right 5.132474e-01	k: 5034	n:10000
Cons ci ratio: 5.141594e-02	ci left: 3.580403e-01	ci right 3.770370e-01	k: 3675	n:10000
KS ci ratio: 3.690201e-02	ci left: 5.202604e-01	ci right 5.399221e-01	k: 5301	n:10000
CNST   10000 perm   2 sec   (5583 perm/sec)   p_kst 5.301000e-01   p_cons 3.675000e-01   p_joint 5.034000e-01

Outputting figure to mutsig2_images.part000000000040/CNST.4_2233_10000_0.5301_0.3675_0.5034.png
                gene_name: CNST
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 49 percent done.
CNTNAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.630385e-02	ci left: 2.503360e-01	ci right 2.676047e-01	k: 2589	n:10000
Cons ci ratio: 1.276264e-01	ci left: 8.067319e-02	ci right 9.176924e-02	k: 861	n:10000
KS ci ratio: 3.120912e-02	ci left: 6.023677e-01	ci right 6.215670e-01	k: 6120	n:10000
CNTNAP1   10000 perm   2 sec   (4770 perm/sec)   p_kst 6.120000e-01   p_cons 8.610000e-02   p_joint 2.589000e-01

Joint ci ratio: 4.917686e-02	ci left: 2.351352e-01	ci right 2.470402e-01	k: 4821	n:20000
Cons ci ratio: 9.198045e-02	ci left: 7.940814e-02	ci right 8.711353e-02	k: 1664	n:20000
KS ci ratio: 2.086250e-02	ci left: 6.316463e-01	ci right 6.450135e-01	k: 12767	n:20000
CNTNAP1   20000 perm   5 sec   (4388 perm/sec)   p_kst 6.383500e-01   p_cons 8.320000e-02   p_joint 2.410500e-01

Outputting figure to mutsig2_images.part000000000040/CNTNAP1.4_4251_20000_0.63835_0.0832_0.24105.png
                gene_name: CNTNAP1
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.083 
      ci_cons_bounds_left: 0.079 
     ci_cons_bounds_right: 0.087 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 51 percent done.
CMBL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.796799e-02	ci left: 8.188316e-01	ci right 8.337778e-01	k: 8264	n:10000
KS ci ratio: 2.924448e-02	ci left: 6.329156e-01	ci right 6.518014e-01	k: 6424	n:10000
CMBL   10000 perm   2 sec   (6516 perm/sec)   p_kst 6.424000e-01   p_cons 8.264000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000040/CMBL.3_758_10000_0.6424_0.8264_1.png
                gene_name: CMBL
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 53 percent done.
CMIP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.474582e-01	ci left: 6.111415e-02	ci right 7.094050e-02	k: 659	n:10000
Cons ci ratio: 4.539792e-01	ci left: 5.726273e-03	ci right 9.170022e-03	k: 73	n:10000
KS ci ratio: 2.551451e-02	ci left: 6.933310e-01	ci right 7.113510e-01	k: 7024	n:10000
CMIP   10000 perm   2 sec   (5810 perm/sec)   p_kst 7.024000e-01   p_cons 7.300000e-03   p_joint 6.590000e-02

Joint ci ratio: 1.267345e-01	ci left: 4.275002e-02	ci right 4.858299e-02	k: 912	n:20000
Cons ci ratio: 3.289497e-01	ci left: 5.891661e-03	ci right 8.255063e-03	k: 140	n:20000
KS ci ratio: 1.811534e-02	ci left: 6.942994e-01	ci right 7.070422e-01	k: 14014	n:20000
CMIP   20000 perm   4 sec   (5205 perm/sec)   p_kst 7.007000e-01   p_cons 7.000000e-03   p_joint 4.560000e-02

Joint ci ratio: 9.924309e-02	ci left: 4.697490e-02	ci right 5.191282e-02	k: 1482	n:30000
Cons ci ratio: 2.670038e-01	ci left: 6.181212e-03	ci right 8.116082e-03	k: 213	n:30000
KS ci ratio: 1.470080e-02	ci left: 6.980612e-01	ci right 7.084327e-01	k: 21098	n:30000
CMIP   30000 perm   6 sec   (4959 perm/sec)   p_kst 7.032667e-01   p_cons 7.100000e-03   p_joint 4.940000e-02

Joint ci ratio: 6.659063e-02	ci left: 7.706401e-02	ci right 8.239719e-02	k: 3188	n:40000
Cons ci ratio: 2.305558e-01	ci left: 6.347756e-03	ci right 8.024985e-03	k: 286	n:40000
KS ci ratio: 1.274708e-02	ci left: 6.982439e-01	ci right 7.072266e-01	k: 28110	n:40000
CMIP   40000 perm   8 sec   (4805 perm/sec)   p_kst 7.027500e-01   p_cons 7.150000e-03   p_joint 7.970000e-02

Joint ci ratio: 6.312603e-02	ci left: 6.933532e-02	ci right 7.387457e-02	k: 3579	n:50000
Cons ci ratio: 2.087961e-01	ci left: 6.268997e-03	ci right 7.749110e-03	k: 349	n:50000
KS ci ratio: 1.141474e-02	ci left: 6.982303e-01	ci right 7.062662e-01	k: 35113	n:50000
CMIP   50000 perm   11 sec   (4684 perm/sec)   p_kst 7.022600e-01   p_cons 6.980000e-03   p_joint 7.158000e-02

Joint ci ratio: 6.085419e-02	ci left: 6.271156e-02	ci right 6.666401e-02	k: 3880	n:60000
Cons ci ratio: 1.872655e-01	ci left: 6.570865e-03	ci right 7.944111e-03	k: 434	n:60000
KS ci ratio: 1.046158e-02	ci left: 6.969174e-01	ci right 7.042632e-01	k: 42036	n:60000
CMIP   60000 perm   13 sec   (4571 perm/sec)   p_kst 7.006000e-01   p_cons 7.233333e-03   p_joint 6.466667e-02

Joint ci ratio: 6.166887e-02	ci left: 5.288604e-02	ci right 5.626529e-02	k: 3819	n:70000
Cons ci ratio: 1.717624e-01	ci left: 6.751096e-03	ci right 8.033104e-03	k: 516	n:70000
KS ci ratio: 9.671705e-03	ci left: 6.977937e-01	ci right 7.045896e-01	k: 49084	n:70000
CMIP   70000 perm   16 sec   (4481 perm/sec)   p_kst 7.012000e-01   p_cons 7.371429e-03   p_joint 5.455714e-02

Joint ci ratio: 5.739259e-02	ci left: 5.351643e-02	ci right 5.669093e-02	k: 4407	n:80000
Cons ci ratio: 1.620364e-01	ci left: 6.673791e-03	ci right 7.862363e-03	k: 580	n:80000
KS ci ratio: 9.034918e-03	ci left: 6.985788e-01	ci right 7.049315e-01	k: 56141	n:80000
CMIP   80000 perm   18 sec   (4397 perm/sec)   p_kst 7.017625e-01   p_cons 7.250000e-03   p_joint 5.508750e-02

Joint ci ratio: 5.946046e-02	ci left: 4.469525e-02	ci right 4.744521e-02	k: 4145	n:90000
Cons ci ratio: 1.543988e-01	ci left: 6.561838e-03	ci right 7.670288e-03	k: 639	n:90000
KS ci ratio: 8.512472e-03	ci left: 6.990444e-01	ci right 7.050315e-01	k: 63184	n:90000
CMIP   90000 perm   21 sec   (4314 perm/sec)   p_kst 7.020444e-01   p_cons 7.100000e-03   p_joint 4.605556e-02

Joint ci ratio: 5.279440e-02	ci left: 5.086889e-02	ci right 5.363715e-02	k: 5224	n:100000
Cons ci ratio: 1.473243e-01	ci left: 6.511867e-03	ci right 7.557033e-03	k: 702	n:100000
KS ci ratio: 8.084610e-03	ci left: 6.987332e-01	ci right 7.044151e-01	k: 70158	n:100000
CMIP   100000 perm   24 sec   (4230 perm/sec)   p_kst 7.015800e-01   p_cons 7.020000e-03   p_joint 5.224000e-02

Joint ci ratio: 4.557437e-02	ci left: 6.158019e-02	ci right 6.446108e-02	k: 6931	n:110000
Cons ci ratio: 1.392315e-01	ci left: 6.656190e-03	ci right 7.660967e-03	k: 786	n:110000
KS ci ratio: 7.695795e-03	ci left: 6.995516e-01	ci right 7.049650e-01	k: 77249	n:110000
CMIP   110000 perm   26 sec   (4162 perm/sec)   p_kst 7.022636e-01   p_cons 7.145455e-03   p_joint 6.300909e-02

Joint ci ratio: 4.354566e-02	ci left: 6.187919e-02	ci right 6.464196e-02	k: 7590	n:120000
Cons ci ratio: 1.330348e-01	ci left: 6.705239e-03	ci right 7.668808e-03	k: 861	n:120000
KS ci ratio: 7.370608e-03	ci left: 6.995285e-01	ci right 7.047118e-01	k: 84255	n:120000
CMIP   120000 perm   29 sec   (4082 perm/sec)   p_kst 7.021250e-01   p_cons 7.175000e-03   p_joint 6.325000e-02

Joint ci ratio: 3.947691e-02	ci left: 6.910658e-02	ci right 7.189723e-02	k: 9164	n:130000
Cons ci ratio: 1.282893e-01	ci left: 6.673103e-03	ci right 7.595241e-03	k: 926	n:130000
KS ci ratio: 7.085784e-03	ci left: 6.993743e-01	ci right 7.043552e-01	k: 91243	n:130000
CMIP   130000 perm   32 sec   (4019 perm/sec)   p_kst 7.018692e-01   p_cons 7.123077e-03   p_joint 7.049231e-02

Joint ci ratio: 3.803262e-02	ci left: 6.918565e-02	ci right 7.187503e-02	k: 9873	n:140000
Cons ci ratio: 1.235173e-01	ci left: 6.701467e-03	ci right 7.590558e-03	k: 999	n:140000
KS ci ratio: 6.833476e-03	ci left: 6.991311e-01	ci right 7.039320e-01	k: 98215	n:140000
CMIP   140000 perm   36 sec   (3931 perm/sec)   p_kst 7.015357e-01   p_cons 7.135714e-03   p_joint 7.052143e-02

Joint ci ratio: 3.668016e-02	ci left: 6.945409e-02	ci right 7.205586e-02	k: 10612	n:150000
Cons ci ratio: 1.192971e-01	ci left: 6.720131e-03	ci right 7.579085e-03	k: 1071	n:150000
KS ci ratio: 6.591086e-03	ci left: 6.998920e-01	ci right 7.045269e-01	k: 105332	n:150000
CMIP   150000 perm   39 sec   (3876 perm/sec)   p_kst 7.022133e-01   p_cons 7.140000e-03   p_joint 7.074667e-02

Joint ci ratio: 3.544057e-02	ci left: 6.977103e-02	ci right 7.229454e-02	k: 11364	n:160000
Cons ci ratio: 1.145774e-01	ci left: 6.846198e-03	ci right 7.684306e-03	k: 1161	n:160000
KS ci ratio: 6.379898e-03	ci left: 7.000903e-01	ci right 7.045773e-01	k: 112374	n:160000
CMIP   160000 perm   42 sec   (3816 perm/sec)   p_kst 7.023375e-01   p_cons 7.256250e-03   p_joint 7.102500e-02

Joint ci ratio: 4.042076e-02	ci left: 5.136292e-02	ci right 5.348767e-02	k: 8911	n:170000
Cons ci ratio: 1.112756e-01	ci left: 6.843615e-03	ci right 7.655679e-03	k: 1231	n:170000
KS ci ratio: 6.192666e-03	ci left: 6.999373e-01	ci right 7.042911e-01	k: 119360	n:170000
CMIP   170000 perm   45 sec   (3765 perm/sec)   p_kst 7.021176e-01   p_cons 7.241176e-03   p_joint 5.241765e-02

Joint ci ratio: 3.920795e-02	ci left: 5.157867e-02	ci right 5.364688e-02	k: 9469	n:180000
Cons ci ratio: 1.078689e-01	ci left: 6.890284e-03	ci right 7.681265e-03	k: 1310	n:180000
KS ci ratio: 6.021243e-03	ci left: 6.997864e-01	ci right 7.040182e-01	k: 126343	n:180000
CMIP   180000 perm   48 sec   (3713 perm/sec)   p_kst 7.019056e-01   p_cons 7.277778e-03   p_joint 5.260556e-02

Joint ci ratio: 3.999968e-02	ci left: 4.715255e-02	ci right 4.908232e-02	k: 9141	n:190000
Cons ci ratio: 1.049092e-01	ci left: 6.911875e-03	ci right 7.682220e-03	k: 1385	n:190000
KS ci ratio: 5.863306e-03	ci left: 6.996529e-01	ci right 7.037725e-01	k: 133326	n:190000
CMIP   190000 perm   52 sec   (3664 perm/sec)   p_kst 7.017158e-01   p_cons 7.289474e-03   p_joint 4.811053e-02

Joint ci ratio: 3.745443e-02	ci left: 5.095165e-02	ci right 5.290136e-02	k: 10384	n:200000
Cons ci ratio: 1.023925e-01	ci left: 6.902336e-03	ci right 7.652052e-03	k: 1454	n:200000
KS ci ratio: 5.717790e-03	ci left: 6.994891e-01	ci right 7.035051e-01	k: 140300	n:200000
CMIP   200000 perm   55 sec   (3613 perm/sec)   p_kst 7.015000e-01   p_cons 7.270000e-03   p_joint 5.192000e-02

Joint ci ratio: 3.652926e-02	ci left: 5.103532e-02	ci right 5.293898e-02	k: 10916	n:210000
Cons ci ratio: 9.998252e-02	ci left: 6.903192e-03	ci right 7.634317e-03	k: 1525	n:210000
KS ci ratio: 5.579802e-03	ci left: 6.995520e-01	ci right 7.034710e-01	k: 147318	n:210000
CMIP   210000 perm   59 sec   (3567 perm/sec)   p_kst 7.015143e-01   p_cons 7.261905e-03   p_joint 5.198095e-02

Outputting figure to mutsig2_images.part000000000040/CMIP.3_2428_210000_0.70151_0.0072619_0.051981.png
                gene_name: CMIP
               theta_stop: 0.100 
                    nperm: 210000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.0073 
      ci_cons_bounds_left: 0.0069 
     ci_cons_bounds_right: 0.0076 
                  p_joint: 0.052 
     ci_joint_bounds_left: 0.051 
    ci_joint_bounds_right: 0.053 

Current progress: 55 percent done.
CNDP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.389968e-02	ci left: 7.201726e-01	ci right 7.376939e-01	k: 7290	n:10000
KS ci ratio: 1.429991e-02	ci left: 8.761293e-01	ci right 8.888470e-01	k: 8826	n:10000
CNDP1   10000 perm   2 sec   (5815 perm/sec)   p_kst 8.826000e-01   p_cons 7.290000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000040/CNDP1.3_1572_10000_0.8826_0.729_1.png
                gene_name: CNDP1
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 57 percent done.
CNNM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.288380e-02	ci left: 5.771752e-01	ci right 5.965742e-01	k: 5869	n:10000
KS ci ratio: 1.637241e-02	ci left: 8.443782e-01	ci right 8.584164e-01	k: 8515	n:10000
CNNM1   10000 perm   2 sec   (5615 perm/sec)   p_kst 8.515000e-01   p_cons 5.869000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000040/CNNM1.3_2900_10000_0.8515_0.5869_1.png
                gene_name: CNNM1
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 58 percent done.
CNNM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.507844e-02	ci left: 4.207667e-01	ci right 4.402738e-01	k: 4305	n:10000
Cons ci ratio: 7.084347e-02	ci left: 2.260267e-01	ci right 2.427283e-01	k: 2343	n:10000
KS ci ratio: 7.168258e-02	ci left: 2.218801e-01	ci right 2.384774e-01	k: 2301	n:10000
CNNM2   10000 perm   2 sec   (5627 perm/sec)   p_kst 2.301000e-01   p_cons 2.343000e-01   p_joint 4.305000e-01

Outputting figure to mutsig2_images.part000000000040/CNNM2.3_2702_10000_0.2301_0.2343_0.4305.png
                gene_name: CNNM2
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 60 percent done.
CNNM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.350785e-01	ci left: 1.123901e-02	ci right 1.585081e-02	k: 134	n:10000
Cons ci ratio: 1.906036e-02	ci left: 8.009530e-01	ci right 8.164667e-01	k: 8088	n:10000
KS ci ratio: 7.145810e-01	ci left: 1.943009e-03	ci right 4.162249e-03	k: 29	n:10000
CNNM3   10000 perm   2 sec   (5036 perm/sec)   p_kst 2.900000e-03   p_cons 8.088000e-01   p_joint 1.340000e-02

Joint ci ratio: 1.554863e-01	ci left: 2.840079e-02	ci right 3.323688e-02	k: 615	n:20000
Cons ci ratio: 1.335525e-02	ci left: 8.061105e-01	ci right 8.169987e-01	k: 16232	n:20000
KS ci ratio: 5.095746e-01	ci left: 2.202806e-03	ci right 3.747331e-03	k: 58	n:20000
CNNM3   20000 perm   4 sec   (4840 perm/sec)   p_kst 2.900000e-03   p_cons 8.116000e-01   p_joint 3.075000e-02

Joint ci ratio: 1.369063e-01	ci left: 2.477622e-02	ci right 2.844956e-02	k: 797	n:30000
Cons ci ratio: 1.099109e-02	ci left: 8.046735e-01	ci right 8.135999e-01	k: 24275	n:30000
KS ci ratio: 4.080544e-01	ci left: 2.442933e-03	ci right 3.722974e-03	k: 91	n:30000
CNNM3   30000 perm   6 sec   (4723 perm/sec)   p_kst 3.033333e-03   p_cons 8.091667e-01   p_joint 2.656667e-02

Joint ci ratio: 2.377542e-01	ci left: 5.947537e-03	ci right 7.575310e-03	k: 269	n:40000
Cons ci ratio: 9.243769e-03	ci left: 8.142337e-01	ci right 8.218201e-01	k: 32722	n:40000
KS ci ratio: 3.618692e-01	ci left: 2.396900e-03	ci right 3.477268e-03	k: 116	n:40000
CNNM3   40000 perm   9 sec   (4630 perm/sec)   p_kst 2.900000e-03   p_cons 8.180500e-01   p_joint 6.725000e-03

Joint ci ratio: 2.118657e-01	ci left: 6.079469e-03	ci right 7.538676e-03	k: 339	n:50000
Cons ci ratio: 8.561721e-03	ci left: 8.039358e-01	ci right 8.108684e-01	k: 40371	n:50000
KS ci ratio: 3.206569e-01	ci left: 2.502884e-03	ci right 3.476241e-03	k: 148	n:50000
CNNM3   50000 perm   11 sec   (4545 perm/sec)   p_kst 2.960000e-03   p_cons 8.074200e-01   p_joint 6.780000e-03

Joint ci ratio: 2.168510e-01	ci left: 4.829295e-03	ci right 6.019314e-03	k: 324	n:60000
Cons ci ratio: 7.783132e-03	ci left: 8.055463e-01	ci right 8.118571e-01	k: 48523	n:60000
KS ci ratio: 2.917385e-01	ci left: 2.562803e-03	ci right 3.453014e-03	k: 179	n:60000
CNNM3   60000 perm   13 sec   (4470 perm/sec)   p_kst 2.983333e-03   p_cons 8.087167e-01   p_joint 5.400000e-03

Joint ci ratio: 1.794397e-01	ci left: 6.163629e-03	ci right 7.392077e-03	k: 473	n:70000
Cons ci ratio: 7.195179e-03	ci left: 8.062405e-01	ci right 8.120767e-01	k: 56642	n:70000
KS ci ratio: 2.669290e-01	ci left: 2.661748e-03	ci right 3.494574e-03	k: 214	n:70000
CNNM3   70000 perm   16 sec   (4401 perm/sec)   p_kst 3.057143e-03   p_cons 8.091714e-01   p_joint 6.757143e-03

Joint ci ratio: 1.687490e-01	ci left: 6.134420e-03	ci right 7.276795e-03	k: 535	n:80000
Cons ci ratio: 6.719764e-03	ci left: 8.069247e-01	ci right 8.123778e-01	k: 64773	n:80000
KS ci ratio: 2.531831e-01	ci left: 2.609476e-03	ci right 3.377270e-03	k: 238	n:80000
CNNM3   80000 perm   18 sec   (4340 perm/sec)   p_kst 2.975000e-03   p_cons 8.096625e-01   p_joint 6.687500e-03

Joint ci ratio: 1.819052e-01	ci left: 4.666295e-03	ci right 5.610478e-03	k: 461	n:90000
Cons ci ratio: 6.339246e-03	ci left: 8.068966e-01	ci right 8.120390e-01	k: 72853	n:90000
KS ci ratio: 2.382042e-01	ci left: 2.642794e-03	ci right 3.367604e-03	k: 269	n:90000
CNNM3   90000 perm   21 sec   (4277 perm/sec)   p_kst 2.988889e-03   p_cons 8.094778e-01   p_joint 5.122222e-03

Joint ci ratio: 1.501463e-01	ci left: 6.261483e-03	ci right 7.287440e-03	k: 676	n:100000
Cons ci ratio: 6.019544e-03	ci left: 8.067406e-01	ci right 8.116214e-01	k: 80919	n:100000
KS ci ratio: 2.306542e-01	ci left: 2.547930e-03	ci right 3.221417e-03	k: 287	n:100000
CNNM3   100000 perm   24 sec   (4216 perm/sec)   p_kst 2.870000e-03   p_cons 8.091900e-01   p_joint 6.760000e-03

Joint ci ratio: 1.456102e-01	ci left: 6.068659e-03	ci right 7.030364e-03	k: 719	n:110000
Cons ci ratio: 5.742431e-03	ci left: 8.066918e-01	ci right 8.113465e-01	k: 88993	n:110000
KS ci ratio: 2.198507e-01	ci left: 2.565070e-03	ci right 3.207039e-03	k: 316	n:110000
CNNM3   110000 perm   26 sec   (4156 perm/sec)   p_kst 2.872727e-03   p_cons 8.090273e-01   p_joint 6.536364e-03

Joint ci ratio: 1.515887e-01	ci left: 5.121446e-03	ci right 5.969386e-03	k: 664	n:120000
Cons ci ratio: 5.497256e-03	ci left: 8.068313e-01	ci right 8.112871e-01	k: 97088	n:120000
KS ci ratio: 2.098283e-01	ci left: 2.595758e-03	ci right 3.211988e-03	k: 347	n:120000
CNNM3   120000 perm   29 sec   (4097 perm/sec)   p_kst 2.891667e-03   p_cons 8.090667e-01   p_joint 5.533333e-03

Joint ci ratio: 1.629705e-01	ci left: 4.069597e-03	ci right 4.798933e-03	k: 575	n:130000
Cons ci ratio: 5.274972e-03	ci left: 8.073082e-01	ci right 8.115856e-01	k: 105229	n:130000
KS ci ratio: 2.018652e-01	ci left: 2.600370e-03	ci right 3.191380e-03	k: 375	n:130000
CNNM3   130000 perm   32 sec   (4041 perm/sec)   p_kst 2.884615e-03   p_cons 8.094538e-01   p_joint 4.423077e-03

Joint ci ratio: 1.405110e-01	ci left: 5.139970e-03	ci right 5.923581e-03	k: 773	n:140000
Cons ci ratio: 5.085741e-03	ci left: 8.072250e-01	ci right 8.113479e-01	k: 113301	n:140000
KS ci ratio: 1.947450e-01	ci left: 2.604702e-03	ci right 3.173340e-03	k: 403	n:140000
CNNM3   140000 perm   35 sec   (3985 perm/sec)   p_kst 2.878571e-03   p_cons 8.092929e-01   p_joint 5.521429e-03

Joint ci ratio: 1.405370e-01	ci left: 4.797245e-03	ci right 5.528750e-03	k: 773	n:150000
Cons ci ratio: 4.909994e-03	ci left: 8.075034e-01	ci right 8.114846e-01	k: 121425	n:150000
KS ci ratio: 1.907802e-01	ci left: 2.538911e-03	ci right 3.080592e-03	k: 420	n:150000
CNNM3   150000 perm   38 sec   (3929 perm/sec)   p_kst 2.800000e-03   p_cons 8.095000e-01   p_joint 5.153333e-03

Joint ci ratio: 1.387696e-01	ci left: 4.618020e-03	ci right 5.312605e-03	k: 793	n:160000
Cons ci ratio: 4.611249e-03	ci left: 8.168347e-01	ci right 8.206162e-01	k: 130997	n:160000
KS ci ratio: 1.851499e-01	ci left: 2.535083e-03	ci right 3.058192e-03	k: 446	n:160000
CNNM3   160000 perm   41 sec   (3875 perm/sec)   p_kst 2.787500e-03   p_cons 8.187313e-01   p_joint 4.956250e-03

Joint ci ratio: 1.335663e-01	ci left: 4.704352e-03	ci right 5.383285e-03	k: 856	n:170000
Cons ci ratio: 4.469872e-03	ci left: 8.171378e-01	ci right 8.208043e-01	k: 139226	n:170000
KS ci ratio: 1.782973e-01	ci left: 2.582485e-03	ci right 3.093527e-03	k: 481	n:170000
CNNM3   170000 perm   44 sec   (3823 perm/sec)   p_kst 2.829412e-03   p_cons 8.189765e-01   p_joint 5.035294e-03

Joint ci ratio: 1.296891e-01	ci left: 4.722378e-03	ci right 5.382606e-03	k: 908	n:180000
Cons ci ratio: 4.345461e-03	ci left: 8.170852e-01	ci right 8.206490e-01	k: 147397	n:180000
KS ci ratio: 1.728249e-01	ci left: 2.603672e-03	ci right 3.101443e-03	k: 512	n:180000
CNNM3   180000 perm   48 sec   (3771 perm/sec)   p_kst 2.844444e-03   p_cons 8.188722e-01   p_joint 5.044444e-03

Joint ci ratio: 1.263294e-01	ci left: 4.723469e-03	ci right 5.365460e-03	k: 957	n:190000
Cons ci ratio: 4.226988e-03	ci left: 8.173141e-01	ci right 8.207814e-01	k: 155620	n:190000
KS ci ratio: 1.687633e-01	ci left: 2.592590e-03	ci right 3.075409e-03	k: 537	n:190000
CNNM3   190000 perm   51 sec   (3721 perm/sec)   p_kst 2.826316e-03   p_cons 8.190526e-01   p_joint 5.036842e-03

Joint ci ratio: 1.227290e-01	ci left: 4.763424e-03	ci right 5.391053e-03	k: 1014	n:200000
Cons ci ratio: 4.119716e-03	ci left: 8.173757e-01	ci right 8.207550e-01	k: 163814	n:200000
KS ci ratio: 1.643906e-01	ci left: 2.601917e-03	ci right 3.072676e-03	k: 566	n:200000
CNNM3   200000 perm   54 sec   (3674 perm/sec)   p_kst 2.830000e-03   p_cons 8.190700e-01   p_joint 5.070000e-03

Joint ci ratio: 1.193639e-01	ci left: 4.804429e-03	ci right 5.418878e-03	k: 1072	n:210000
Cons ci ratio: 4.023447e-03	ci left: 8.171936e-01	ci right 8.204929e-01	k: 171958	n:210000
KS ci ratio: 1.599379e-01	ci left: 2.624216e-03	ci right 3.084915e-03	k: 598	n:210000
CNNM3   210000 perm   58 sec   (3627 perm/sec)   p_kst 2.847619e-03   p_cons 8.188476e-01   p_joint 5.104762e-03

Joint ci ratio: 1.159524e-01	ci left: 4.868403e-03	ci right 5.472020e-03	k: 1136	n:220000
Cons ci ratio: 3.933800e-03	ci left: 8.170152e-01	ci right 8.202400e-01	k: 180099	n:220000
KS ci ratio: 1.567025e-01	ci left: 2.614067e-03	ci right 3.062827e-03	k: 623	n:220000
CNNM3   220000 perm   61 sec   (3581 perm/sec)   p_kst 2.831818e-03   p_cons 8.186318e-01   p_joint 5.163636e-03

Joint ci ratio: 1.130544e-01	ci left: 4.905914e-03	ci right 5.497966e-03	k: 1195	n:230000
Cons ci ratio: 3.849602e-03	ci left: 8.168750e-01	ci right 8.200300e-01	k: 188245	n:230000
KS ci ratio: 1.516765e-01	ci left: 2.675983e-03	ci right 3.119301e-03	k: 665	n:230000
CNNM3   230000 perm   65 sec   (3534 perm/sec)   p_kst 2.891304e-03   p_cons 8.184565e-01   p_joint 5.195652e-03

Joint ci ratio: 1.103633e-01	ci left: 4.940470e-03	ci right 5.521577e-03	k: 1254	n:240000
Cons ci ratio: 3.766623e-03	ci left: 8.170607e-01	ci right 8.201482e-01	k: 196466	n:240000
KS ci ratio: 1.477340e-01	ci left: 2.708868e-03	ci right 3.144940e-03	k: 701	n:240000
CNNM3   240000 perm   69 sec   (3492 perm/sec)   p_kst 2.920833e-03   p_cons 8.186083e-01   p_joint 5.225000e-03

Joint ci ratio: 1.080626e-01	ci left: 4.952953e-03	ci right 5.522610e-03	k: 1308	n:250000
Cons ci ratio: 3.693806e-03	ci left: 8.168269e-01	ci right 8.198537e-01	k: 204586	n:250000
KS ci ratio: 1.444770e-01	ci left: 2.723836e-03	ci right 3.151816e-03	k: 733	n:250000
CNNM3   250000 perm   72 sec   (3451 perm/sec)   p_kst 2.932000e-03   p_cons 8.183440e-01   p_joint 5.232000e-03

Joint ci ratio: 1.060174e-01	ci left: 4.953357e-03	ci right 5.511606e-03	k: 1359	n:260000
Cons ci ratio: 3.622845e-03	ci left: 8.167931e-01	ci right 8.197614e-01	k: 212753	n:260000
KS ci ratio: 1.417049e-01	ci left: 2.726619e-03	ci right 3.146121e-03	k: 762	n:260000
CNNM3   260000 perm   76 sec   (3411 perm/sec)   p_kst 2.930769e-03   p_cons 8.182808e-01   p_joint 5.226923e-03

Joint ci ratio: 1.041582e-01	ci left: 4.946610e-03	ci right 5.493723e-03	k: 1408	n:270000
Cons ci ratio: 3.554671e-03	ci left: 8.168589e-01	ci right 8.197713e-01	k: 220946	n:270000
KS ci ratio: 1.385610e-01	ci left: 2.750720e-03	ci right 3.163767e-03	k: 797	n:270000
CNNM3   270000 perm   80 sec   (3371 perm/sec)   p_kst 2.951852e-03   p_cons 8.183185e-01   p_joint 5.214815e-03

Joint ci ratio: 1.024997e-01	ci left: 4.929983e-03	ci right 5.466052e-03	k: 1454	n:280000
Cons ci ratio: 3.489996e-03	ci left: 8.169383e-01	ci right 8.197979e-01	k: 229144	n:280000
KS ci ratio: 1.357811e-01	ci left: 2.766295e-03	ci right 3.172673e-03	k: 830	n:280000
CNNM3   280000 perm   84 sec   (3332 perm/sec)   p_kst 2.964286e-03   p_cons 8.183714e-01   p_joint 5.192857e-03

Joint ci ratio: 1.006822e-01	ci left: 4.938099e-03	ci right 5.464967e-03	k: 1507	n:290000
Cons ci ratio: 3.430875e-03	ci left: 8.168260e-01	ci right 8.196366e-01	k: 237288	n:290000
KS ci ratio: 1.335502e-01	ci left: 2.764204e-03	ci right 3.163073e-03	k: 858	n:290000
CNNM3   290000 perm   88 sec   (3295 perm/sec)   p_kst 2.958621e-03   p_cons 8.182345e-01   p_joint 5.196552e-03

Joint ci ratio: 9.879910e-02	ci left: 4.962010e-03	ci right 5.480952e-03	k: 1565	n:300000
Cons ci ratio: 3.373902e-03	ci left: 8.167884e-01	ci right 8.195521e-01	k: 245452	n:300000
KS ci ratio: 1.312034e-01	ci left: 2.771976e-03	ci right 3.164390e-03	k: 889	n:300000
CNNM3   300000 perm   92 sec   (3258 perm/sec)   p_kst 2.963333e-03   p_cons 8.181733e-01   p_joint 5.216667e-03

Joint ci ratio: 9.722876e-02	ci left: 4.962428e-03	ci right 5.472695e-03	k: 1616	n:310000
Cons ci ratio: 3.319856e-03	ci left: 8.167375e-01	ci right 8.194566e-01	k: 253611	n:310000
KS ci ratio: 1.291874e-01	ci left: 2.769938e-03	ci right 3.155576e-03	k: 917	n:310000
CNNM3   310000 perm   96 sec   (3221 perm/sec)   p_kst 2.958065e-03   p_cons 8.181000e-01   p_joint 5.212903e-03

Joint ci ratio: 9.555837e-02	ci left: 4.981185e-03	ci right 5.484089e-03	k: 1673	n:320000
Cons ci ratio: 3.267640e-03	ci left: 8.167527e-01	ci right 8.194290e-01	k: 261790	n:320000
KS ci ratio: 1.267918e-01	ci left: 2.789252e-03	ci right 3.169837e-03	k: 952	n:320000
CNNM3   320000 perm   101 sec   (3184 perm/sec)   p_kst 2.975000e-03   p_cons 8.180937e-01   p_joint 5.228125e-03

Joint ci ratio: 9.391669e-02	ci left: 5.004795e-03	ci right 5.500924e-03	k: 1732	n:330000
Cons ci ratio: 3.320618e-03	ci left: 8.071928e-01	ci right 8.098806e-01	k: 266818	n:330000
KS ci ratio: 1.247149e-01	ci left: 2.798649e-03	ci right 3.173799e-03	k: 984	n:330000
CNNM3   330000 perm   105 sec   (3146 perm/sec)   p_kst 2.981818e-03   p_cons 8.085394e-01   p_joint 5.248485e-03

Joint ci ratio: 9.240866e-02	ci left: 5.021338e-03	ci right 5.510682e-03	k: 1789	n:340000
Cons ci ratio: 3.271184e-03	ci left: 8.072352e-01	ci right 8.098831e-01	k: 274911	n:340000
KS ci ratio: 1.225555e-01	ci left: 2.816095e-03	ci right 3.186574e-03	k: 1019	n:340000
CNNM3   340000 perm   109 sec   (3109 perm/sec)   p_kst 2.997059e-03   p_cons 8.085618e-01   p_joint 5.261765e-03

Joint ci ratio: 9.097102e-02	ci left: 5.036996e-03	ci right 5.519822e-03	k: 1846	n:350000
Cons ci ratio: 3.223894e-03	ci left: 8.072755e-01	ci right 8.098851e-01	k: 283004	n:350000
KS ci ratio: 1.207921e-01	ci left: 2.818741e-03	ci right 3.183850e-03	k: 1049	n:350000
CNNM3   350000 perm   114 sec   (3072 perm/sec)   p_kst 2.997143e-03   p_cons 8.085829e-01   p_joint 5.274286e-03

Joint ci ratio: 8.993144e-02	ci left: 5.013819e-03	ci right 5.488643e-03	k: 1889	n:360000
Cons ci ratio: 3.178085e-03	ci left: 8.073639e-01	ci right 8.099366e-01	k: 291115	n:360000
KS ci ratio: 1.192688e-01	ci left: 2.813190e-03	ci right 3.172661e-03	k: 1076	n:360000
CNNM3   360000 perm   119 sec   (3037 perm/sec)   p_kst 2.988889e-03   p_cons 8.086528e-01   p_joint 5.247222e-03

Joint ci ratio: 8.865050e-02	ci left: 5.023641e-03	ci right 5.492267e-03	k: 1944	n:370000
Cons ci ratio: 3.135378e-03	ci left: 8.073286e-01	ci right 8.098665e-01	k: 299182	n:370000
KS ci ratio: 1.174821e-01	ci left: 2.823707e-03	ci right 3.178742e-03	k: 1109	n:370000
CNNM3   370000 perm   123 sec   (3003 perm/sec)   p_kst 2.997297e-03   p_cons 8.086000e-01   p_joint 5.254054e-03

Joint ci ratio: 8.753284e-02	ci left: 5.020119e-03	ci right 5.482211e-03	k: 1994	n:380000
Cons ci ratio: 3.093374e-03	ci left: 8.073930e-01	ci right 8.098970e-01	k: 307286	n:380000
KS ci ratio: 1.155706e-01	ci left: 2.843931e-03	ci right 3.195294e-03	k: 1146	n:380000
CNNM3   380000 perm   128 sec   (2969 perm/sec)   p_kst 3.015789e-03   p_cons 8.086474e-01   p_joint 5.247368e-03

Joint ci ratio: 8.620253e-02	ci left: 5.046922e-03	ci right 5.504065e-03	k: 2056	n:390000
Cons ci ratio: 3.052407e-03	ci left: 8.075160e-01	ci right 8.099871e-01	k: 315414	n:390000
KS ci ratio: 1.136052e-01	ci left: 2.870637e-03	ci right 3.218863e-03	k: 1186	n:390000
CNNM3   390000 perm   133 sec   (2937 perm/sec)   p_kst 3.041026e-03   p_cons 8.087538e-01   p_joint 5.271795e-03

Joint ci ratio: 8.513327e-02	ci left: 5.047964e-03	ci right 5.499248e-03	k: 2108	n:400000
Cons ci ratio: 3.014438e-03	ci left: 8.074876e-01	ci right 8.099279e-01	k: 323484	n:400000
KS ci ratio: 1.121501e-01	ci left: 2.874183e-03	ci right 3.218078e-03	k: 1217	n:400000
CNNM3   400000 perm   138 sec   (2905 perm/sec)   p_kst 3.042500e-03   p_cons 8.087100e-01   p_joint 5.270000e-03

Joint ci ratio: 8.420081e-02	ci left: 5.037049e-03	ci right 5.482182e-03	k: 2155	n:410000
Cons ci ratio: 2.977241e-03	ci left: 8.075244e-01	ci right 8.099346e-01	k: 331580	n:410000
KS ci ratio: 1.109725e-01	ci left: 2.865725e-03	ci right 3.204773e-03	k: 1243	n:410000
CNNM3   410000 perm   143 sec   (2873 perm/sec)   p_kst 3.031707e-03   p_cons 8.087317e-01   p_joint 5.256098e-03

Joint ci ratio: 8.295832e-02	ci left: 5.068649e-03	ci right 5.509646e-03	k: 2220	n:420000
Cons ci ratio: 2.942587e-03	ci left: 8.074332e-01	ci right 8.098150e-01	k: 339623	n:420000
KS ci ratio: 1.092291e-01	ci left: 2.890111e-03	ci right 3.226326e-03	k: 1283	n:420000
CNNM3   420000 perm   148 sec   (2842 perm/sec)   p_kst 3.054762e-03   p_cons 8.086262e-01   p_joint 5.285714e-03

Joint ci ratio: 8.259048e-02	ci left: 4.996315e-03	ci right 5.428998e-03	k: 2240	n:430000
Cons ci ratio: 2.909683e-03	ci left: 8.072857e-01	ci right 8.096404e-01	k: 347640	n:430000
KS ci ratio: 1.079750e-01	ci left: 2.890772e-03	ci right 3.222957e-03	k: 1313	n:430000
CNNM3   430000 perm   153 sec   (2812 perm/sec)   p_kst 3.053488e-03   p_cons 8.084651e-01   p_joint 5.209302e-03

Joint ci ratio: 8.173827e-02	ci left: 4.987385e-03	ci right 5.414625e-03	k: 2287	n:440000
Cons ci ratio: 2.876231e-03	ci left: 8.073205e-01	ci right 8.096481e-01	k: 355734	n:440000
KS ci ratio: 1.068829e-01	ci left: 2.884787e-03	ci right 3.212721e-03	k: 1340	n:440000
CNNM3   440000 perm   158 sec   (2783 perm/sec)   p_kst 3.045455e-03   p_cons 8.084864e-01   p_joint 5.197727e-03

Joint ci ratio: 8.065192e-02	ci left: 5.011537e-03	ci right 5.434872e-03	k: 2349	n:450000
Cons ci ratio: 2.843804e-03	ci left: 8.073651e-01	ci right 8.096665e-01	k: 363833	n:450000
KS ci ratio: 1.053608e-01	ci left: 2.905048e-03	ci right 3.230291e-03	k: 1379	n:450000
CNNM3   450000 perm   163 sec   (2756 perm/sec)   p_kst 3.064444e-03   p_cons 8.085178e-01   p_joint 5.220000e-03

Joint ci ratio: 7.975747e-02	ci left: 5.015497e-03	ci right 5.434250e-03	k: 2402	n:460000
Cons ci ratio: 2.812253e-03	ci left: 8.074296e-01	ci right 8.097056e-01	k: 371942	n:460000
KS ci ratio: 1.042340e-01	ci left: 2.905403e-03	ci right 3.226994e-03	k: 1409	n:460000
CNNM3   460000 perm   169 sec   (2729 perm/sec)   p_kst 3.063043e-03   p_cons 8.085696e-01   p_joint 5.221739e-03

Joint ci ratio: 7.882764e-02	ci left: 5.027658e-03	ci right 5.442308e-03	k: 2459	n:470000
Cons ci ratio: 2.782341e-03	ci left: 8.074233e-01	ci right 8.096750e-01	k: 380019	n:470000
KS ci ratio: 1.027497e-01	ci left: 2.928564e-03	ci right 3.247823e-03	k: 1450	n:470000
CNNM3   470000 perm   174 sec   (2701 perm/sec)   p_kst 3.085106e-03   p_cons 8.085511e-01   p_joint 5.231915e-03

Joint ci ratio: 7.796073e-02	ci left: 5.035252e-03	ci right 5.445754e-03	k: 2514	n:480000
Cons ci ratio: 2.753400e-03	ci left: 8.074132e-01	ci right 8.096414e-01	k: 388094	n:480000
KS ci ratio: 1.017038e-01	ci left: 2.928454e-03	ci right 3.244258e-03	k: 1480	n:480000
CNNM3   480000 perm   180 sec   (2674 perm/sec)   p_kst 3.083333e-03   p_cons 8.085292e-01   p_joint 5.237500e-03

Joint ci ratio: 7.724275e-02	ci left: 5.026548e-03	ci right 5.432397e-03	k: 2561	n:490000
Cons ci ratio: 2.724482e-03	ci left: 8.075018e-01	ci right 8.097068e-01	k: 396217	n:490000
KS ci ratio: 1.006892e-01	ci left: 2.928364e-03	ci right 3.240822e-03	k: 1510	n:490000
CNNM3   490000 perm   185 sec   (2647 perm/sec)   p_kst 3.081633e-03   p_cons 8.086061e-01   p_joint 5.226531e-03

Joint ci ratio: 7.644123e-02	ci left: 5.031943e-03	ci right 5.433823e-03	k: 2615	n:500000
Cons ci ratio: 2.697589e-03	ci left: 8.074567e-01	ci right 8.096398e-01	k: 404275	n:500000
KS ci ratio: 9.951020e-02	ci left: 2.939996e-03	ci right 3.249807e-03	k: 1546	n:500000
CNNM3   500000 perm   191 sec   (2622 perm/sec)   p_kst 3.092000e-03   p_cons 8.085500e-01   p_joint 5.230000e-03

Outputting figure to mutsig2_images.part000000000040/CNNM3.3_2156_500000_0.003092_0.80855_0.00523.png
                gene_name: CNNM3
               theta_stop: 0.100 
                    nperm: 500000 
                     p_ks: 0.0031 
        ci_ks_bounds_left: 0.0029 
       ci_ks_bounds_right: 0.0032 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.0052 
     ci_joint_bounds_left: 0.0050 
    ci_joint_bounds_right: 0.0054 

Current progress: 62 percent done.
CNOT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.766457e-02	ci left: 6.581687e-01	ci right 6.767337e-01	k: 6675	n:10000
KS ci ratio: 2.486315e-02	ci left: 7.041236e-01	ci right 7.219521e-01	k: 7131	n:10000
CNOT3   10000 perm   2 sec   (5770 perm/sec)   p_kst 7.131000e-01   p_cons 6.675000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000040/CNOT3.3_2330_10000_0.7131_0.6675_1.png
                gene_name: CNOT3
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 64 percent done.
CNOT6L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.563197e-03	ci left: 9.392090e-01	ci right 9.483304e-01	k: 9439	n:10000
Cons ci ratio: 3.277544e-02	ci left: 5.787803e-01	ci right 5.981681e-01	k: 5885	n:10000
KS ci ratio: 1.441001e-02	ci left: 8.744927e-01	ci right 8.872845e-01	k: 8810	n:10000
CNOT6L   10000 perm   2 sec   (6160 perm/sec)   p_kst 8.810000e-01   p_cons 5.885000e-01   p_joint 9.439000e-01

Outputting figure to mutsig2_images.part000000000040/CNOT6L.3_1716_10000_0.881_0.5885_0.9439.png
                gene_name: CNOT6L
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 66 percent done.
CNTNAP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.162196e-02	ci left: 2.221762e-01	ci right 2.387810e-01	k: 2304	n:10000
Cons ci ratio: 2.978118e-02	ci left: 6.244707e-01	ci right 6.434512e-01	k: 6340	n:10000
KS ci ratio: 1.275454e-01	ci left: 8.077027e-02	ci right 9.187210e-02	k: 862	n:10000
CNTNAP3   10000 perm   2 sec   (5103 perm/sec)   p_kst 8.620000e-02   p_cons 6.340000e-01   p_joint 2.304000e-01

Joint ci ratio: 6.192770e-02	ci left: 1.617065e-01	ci right 1.720906e-01	k: 3337	n:20000
Cons ci ratio: 2.119350e-02	ci left: 6.243191e-01	ci right 6.377428e-01	k: 12621	n:20000
KS ci ratio: 9.138306e-02	ci left: 8.038716e-02	ci right 8.813421e-02	k: 1684	n:20000
CNTNAP3   20000 perm   4 sec   (4625 perm/sec)   p_kst 8.420000e-02   p_cons 6.310500e-01   p_joint 1.668500e-01

Outputting figure to mutsig2_images.part000000000040/CNTNAP3.3_3963_20000_0.0842_0.63105_0.16685.png
                gene_name: CNTNAP3
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.084 
        ci_ks_bounds_left: 0.080 
       ci_ks_bounds_right: 0.088 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 68 percent done.
COBLL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.642336e-02	ci left: 5.267670e-01	ci right 5.464117e-01	k: 5366	n:10000
Cons ci ratio: 1.868369e-02	ci left: 8.071466e-01	ci right 8.224696e-01	k: 8149	n:10000
KS ci ratio: 6.916798e-02	ci left: 2.346196e-01	ci right 2.515303e-01	k: 2430	n:10000
COBLL1   10000 perm   2 sec   (5638 perm/sec)   p_kst 2.430000e-01   p_cons 8.149000e-01   p_joint 5.366000e-01

Outputting figure to mutsig2_images.part000000000040/COBLL1.3_3557_10000_0.243_0.8149_0.5366.png
                gene_name: COBLL1
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 70 percent done.
COG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.561004e-02	ci left: 1.369772e-01	ci right 1.508309e-01	k: 1438	n:10000
Cons ci ratio: 1.032447e-02	ci left: 9.301971e-01	ci right 9.399476e-01	k: 9352	n:10000
KS ci ratio: 1.193266e-01	ci left: 9.155922e-02	ci right 1.032765e-01	k: 973	n:10000
COG3   10000 perm   2 sec   (5798 perm/sec)   p_kst 9.730000e-02   p_cons 9.352000e-01   p_joint 1.438000e-01

Joint ci ratio: 7.715840e-02	ci left: 1.098725e-01	ci right 1.187399e-01	k: 2285	n:20000
Cons ci ratio: 7.162094e-03	ci left: 9.340049e-01	ci right 9.407672e-01	k: 18749	n:20000
KS ci ratio: 8.366637e-02	ci left: 9.474715e-02	ci right 1.030699e-01	k: 1977	n:20000
COG3   20000 perm   4 sec   (5167 perm/sec)   p_kst 9.885000e-02   p_cons 9.374500e-01   p_joint 1.142500e-01

Outputting figure to mutsig2_images.part000000000040/COG3.3_2579_20000_0.09885_0.93745_0.11425.png
                gene_name: COG3
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.099 
        ci_ks_bounds_left: 0.095 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 72 percent done.
COG4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.465227e-02	ci left: 2.600302e-01	ci right 2.775047e-01	k: 2687	n:10000
Cons ci ratio: 8.698407e-02	ci left: 1.614075e-01	ci right 1.761860e-01	k: 1687	n:10000
KS ci ratio: 6.465227e-02	ci left: 2.600302e-01	ci right 2.775047e-01	k: 2687	n:10000
COG4   10000 perm   2 sec   (5853 perm/sec)   p_kst 2.687000e-01   p_cons 1.687000e-01   p_joint 2.687000e-01

Outputting figure to mutsig2_images.part000000000040/COG4.3_2446_10000_0.2687_0.1687_0.2687.png
                gene_name: COG4
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 74 percent done.
COG5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.834897e-02	ci left: 5.010505e-01	ci right 5.207431e-01	k: 5109	n:10000
Cons ci ratio: 2.562438e-02	ci left: 6.915160e-01	ci right 7.095671e-01	k: 7006	n:10000
KS ci ratio: 6.284356e-02	ci left: 2.712149e-01	ci right 2.889134e-01	k: 2800	n:10000
COG5   10000 perm   2 sec   (5595 perm/sec)   p_kst 2.800000e-01   p_cons 7.006000e-01   p_joint 5.109000e-01

Outputting figure to mutsig2_images.part000000000040/COG5.3_2675_10000_0.28_0.7006_0.5109.png
                gene_name: COG5
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 75 percent done.
CMA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.987073e-02	ci left: 3.722635e-01	ci right 3.914054e-01	k: 3818	n:10000
Cons ci ratio: 4.250783e-02	ci left: 4.496954e-01	ci right 4.693282e-01	k: 4595	n:10000
KS ci ratio: 9.817468e-02	ci left: 1.307088e-01	ci right 1.443032e-01	k: 1374	n:10000
CMA1   10000 perm   1 sec   (6745 perm/sec)   p_kst 1.374000e-01   p_cons 4.595000e-01   p_joint 3.818000e-01

Outputting figure to mutsig2_images.part000000000040/CMA1.2_764_10000_0.1374_0.4595_0.3818.png
                gene_name: CMA1
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 77 percent done.
CMAS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.281508e-02	ci left: 8.975446e-01	ci right 9.092192e-01	k: 9035	n:10000
Cons ci ratio: 1.033322e-01	ci left: 1.192622e-01	ci right 1.323567e-01	k: 1257	n:10000
KS ci ratio: 2.175662e-02	ci left: 7.560573e-01	ci right 7.727884e-01	k: 7645	n:10000
CMAS   10000 perm   2 sec   (6600 perm/sec)   p_kst 7.645000e-01   p_cons 1.257000e-01   p_joint 9.035000e-01

Joint ci ratio: 8.929802e-03	ci left: 9.018713e-01	ci right 9.100102e-01	k: 18120	n:20000
Cons ci ratio: 7.291909e-02	ci left: 1.216273e-01	ci right 1.308816e-01	k: 2524	n:20000
KS ci ratio: 1.528174e-02	ci left: 7.609768e-01	ci right 7.727456e-01	k: 15338	n:20000
CMAS   20000 perm   3 sec   (5833 perm/sec)   p_kst 7.669000e-01   p_cons 1.262000e-01   p_joint 9.060000e-01

Outputting figure to mutsig2_images.part000000000040/CMAS.2_1337_20000_0.7669_0.1262_0.906.png
                gene_name: CMAS
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 79 percent done.
CNKSR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.568287e-02	ci left: 5.369808e-01	ci right 5.565920e-01	k: 5468	n:10000
KS ci ratio: 2.068535e-02	ci left: 7.739786e-01	ci right 7.902567e-01	k: 7822	n:10000
CNKSR3   10000 perm   2 sec   (6295 perm/sec)   p_kst 7.822000e-01   p_cons 5.468000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000040/CNKSR3.2_1720_10000_0.7822_0.5468_1.png
                gene_name: CNKSR3
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
CNN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.450458e-02	ci left: 2.609207e-01	ci right 2.784136e-01	k: 2696	n:10000
KS ci ratio: 2.405090e-02	ci left: 7.176482e-01	ci right 7.352197e-01	k: 7265	n:10000
CNN1   10000 perm   1 sec   (6902 perm/sec)   p_kst 7.265000e-01   p_cons 2.696000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000040/CNN1.2_922_10000_0.7265_0.2696_1.png
                gene_name: CNN1
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
CNOT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.838059e-03	ci left: 9.885089e-01	ci right 9.923974e-01	k: 9906	n:10000
Cons ci ratio: 6.193667e-02	ci left: 2.770574e-01	ci right 2.948674e-01	k: 2859	n:10000
KS ci ratio: 3.406402e-02	ci left: 5.599267e-01	ci right 5.794327e-01	k: 5697	n:10000
CNOT2   10000 perm   2 sec   (6350 perm/sec)   p_kst 5.697000e-01   p_cons 2.859000e-01   p_joint 9.906000e-01

Outputting figure to mutsig2_images.part000000000040/CNOT2.2_1683_10000_0.5697_0.2859_0.9906.png
                gene_name: CNOT2
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 85 percent done.
CNOT6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.264082e-03	ci left: 9.861030e-01	ci right 9.904055e-01	k: 9884	n:10000
Cons ci ratio: 4.610433e-02	ci left: 4.098026e-01	ci right 4.292443e-01	k: 4195	n:10000
KS ci ratio: 2.896504e-02	ci left: 6.373404e-01	ci right 6.561741e-01	k: 6468	n:10000
CNOT6   10000 perm   2 sec   (6351 perm/sec)   p_kst 6.468000e-01   p_cons 4.195000e-01   p_joint 9.884000e-01

Outputting figure to mutsig2_images.part000000000040/CNOT6.2_1718_10000_0.6468_0.4195_0.9884.png
                gene_name: CNOT6
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 87 percent done.
CNPY1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.070219e-02	ci left: 9.255458e-01	ci right 9.356016e-01	k: 9307	n:10000
KS ci ratio: 2.366999e-02	ci left: 7.240102e-01	ci right 7.414540e-01	k: 7328	n:10000
CNPY1   10000 perm   1 sec   (7377 perm/sec)   p_kst 7.328000e-01   p_cons 9.307000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000040/CNPY1.2_291_10000_0.7328_0.9307_1.png
                gene_name: CNPY1
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
CNR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.357336e-02	ci left: 5.670453e-01	ci right 5.865100e-01	k: 5768	n:10000
KS ci ratio: 3.463008e-02	ci left: 5.518081e-01	ci right 5.713560e-01	k: 5616	n:10000
CNR2   10000 perm   1 sec   (6901 perm/sec)   p_kst 5.616000e-01   p_cons 5.768000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000040/CNR2.2_1087_10000_0.5616_0.5768_1.png
                gene_name: CNR2
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
CNTLN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.480136e-03	ci left: 9.847992e-01	ci right 9.893104e-01	k: 9872	n:10000
Cons ci ratio: 2.951867e-02	ci left: 6.285922e-01	ci right 6.475273e-01	k: 6381	n:10000
KS ci ratio: 4.538307e-02	ci left: 4.174770e-01	ci right 4.369654e-01	k: 4272	n:10000
CNTLN   10000 perm   2 sec   (5297 perm/sec)   p_kst 4.272000e-01   p_cons 6.381000e-01   p_joint 9.872000e-01

Outputting figure to mutsig2_images.part000000000040/CNTLN.2_4355_10000_0.4272_0.6381_0.9872.png
                gene_name: CNTLN
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 92 percent done.
COASY
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.366971e-02	ci left: 5.656415e-01	ci right 5.851146e-01	k: 5754	n:10000
KS ci ratio: 2.082487e-02	ci left: 7.716487e-01	ci right 7.879880e-01	k: 7799	n:10000
COASY   10000 perm   2 sec   (6217 perm/sec)   p_kst 7.799000e-01   p_cons 5.754000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000040/COASY.2_1822_10000_0.7799_0.5754_1.png
                gene_name: COASY
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
COBL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.546220e-02	ci left: 8.585543e-01	ci right 8.720322e-01	k: 8654	n:10000
Cons ci ratio: 2.039137e-03	ci left: 9.961927e-01	ci right 9.983009e-01	k: 9974	n:10000
KS ci ratio: 6.098002e-02	ci left: 2.833972e-01	ci right 3.013239e-01	k: 2923	n:10000
COBL   10000 perm   2 sec   (5446 perm/sec)   p_kst 2.923000e-01   p_cons 9.974000e-01   p_joint 8.654000e-01

Outputting figure to mutsig2_images.part000000000040/COBL.2_3838_10000_0.2923_0.9974_0.8654.png
                gene_name: COBL
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 96 percent done.
COBRA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.266726e-02	ci left: 2.171426e-01	ci right 2.336177e-01	k: 2253	n:10000
Cons ci ratio: 7.822696e-02	ci left: 1.927894e-01	ci right 2.085854e-01	k: 2006	n:10000
KS ci ratio: 1.328380e-01	ci left: 7.475563e-02	ci right 8.549047e-02	k: 800	n:10000
COBRA1   10000 perm   2 sec   (6546 perm/sec)   p_kst 8.000000e-02   p_cons 2.006000e-01   p_joint 2.253000e-01

Joint ci ratio: 5.547982e-02	ci left: 1.941785e-01	ci right 2.053090e-01	k: 3994	n:20000
Cons ci ratio: 5.546248e-02	ci left: 1.942774e-01	ci right 2.054100e-01	k: 3996	n:20000
KS ci ratio: 9.336355e-02	ci left: 7.720594e-02	ci right 8.481639e-02	k: 1619	n:20000
COBRA1   20000 perm   3 sec   (5777 perm/sec)   p_kst 8.095000e-02   p_cons 1.998000e-01   p_joint 1.997000e-01

Outputting figure to mutsig2_images.part000000000040/COBRA1.2_1795_20000_0.08095_0.1998_0.1997.png
                gene_name: COBRA1
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.081 
        ci_ks_bounds_left: 0.077 
       ci_ks_bounds_right: 0.085 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 98 percent done.
COCH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.442180e-02	ci left: 3.322029e-01	ci right 3.508895e-01	k: 3415	n:10000
Cons ci ratio: 6.675595e-02	ci left: 2.477650e-01	ci right 2.649772e-01	k: 2563	n:10000
KS ci ratio: 5.121749e-02	ci left: 3.598301e-01	ci right 3.788461e-01	k: 3693	n:10000
COCH   10000 perm   2 sec   (6378 perm/sec)   p_kst 3.693000e-01   p_cons 2.563000e-01   p_joint 3.415000e-01

Outputting figure to mutsig2_images.part000000000040/COCH.2_1697_10000_0.3693_0.2563_0.3415.png
                gene_name: COCH
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000040
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 40 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1711>
Subject: Job 8003972: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1711>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000041> was used as the working directory.
Started at Sun Nov 11 15:04:50 2012
Results reported at Sun Nov 11 18:21:33 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000041.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000041.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 41  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000041.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  11988.90 sec.
    Max Memory :      4700 MB
    Max Swap   :      7134 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
41
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 41
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 41: processing genes 3620 - 3709
Calculating significance of each gene.
Using projection method.
3620	COG6	1
3621	COG7	6.196732e-01
3622	COG8	1
3623	COIL	6.246591e-01
3624	COL10A1	1
3625	COL11A1	3.037841e-01
3626	COL11A2	5.910263e-02
3627	COL12A1	1
3628	COL13A1	2.734400e-02
3629	COL14A1	9.871709e-01
3630	COL15A1	9.970897e-01
3631	COL16A1	9.965971e-01
3632	COL17A1	9.944329e-01
3633	COL18A1	1
3634	COL19A1	9.248263e-01
3635	COL1A1	4.321959e-01
3636	COL1A2	9.945114e-01
3637	COL20A1	3.791537e-02
3638	COL21A1	1.959012e-01
3639	COL22A1	1.841647e-02
3640	COL23A1	2.321032e-01
3641	COL24A1	6.740087e-02
3642	COL25A1	7.568288e-01
3643	COL27A1	9.763359e-01
3644	COL28A1	1
3645	COL2A1	9.745339e-01
3646	COL3A1	1.379082e-02
3647	COL4A1	9.978334e-01
3648	COL4A2	9.262558e-01
3649	COL4A3	9.902456e-01
3650	COL4A3BP	5.431478e-01
3651	COL4A4	9.888713e-01
3652	COL4A5	9.887144e-01
3653	COL4A6	9.331602e-01
3654	COL5A1	9.986615e-01
3655	COL5A2	8.312287e-01
3656	COL5A3	2.780852e-01
3657	COL6A1	1
3658	COL6A2	3.905640e-01
3659	COL6A3	9.951265e-01
3660	COL6A5	1
3661	COL6A6	9.928461e-01
3662	COL7A1	7.869638e-01
3663	COL8A1	7.255099e-02
3664	COL8A2	5.885547e-01
3665	COL9A1	1
3666	COL9A2	1
3667	COL9A3	7.575011e-01
3668	COLEC10	1
3669	COLEC11	2.642817e-02
3670	COLEC12	2.034635e-01
3671	COLQ	8.728198e-01
3672	COMMD1	1
3673	COMMD10	3.756967e-01
3674	COMMD2	2.252823e-01
3675	COMMD3	1
3676	COMMD4	1
3677	COMMD5	1
3678	COMMD6	1
3679	COMMD7	1
3680	COMMD8	1.404483e-01
3681	COMMD9	1
3682	COMP	1
3683	COMT	1
3684	COMTD1	1
3685	COPA	3.493597e-01
3686	COPB1	9.597167e-01
3687	COPB2	7.672707e-01
3688	COPE	1
3689	COPG	6.367769e-01
3690	COPG2	6.572047e-01
3691	COPS2	3.102869e-01
3692	COPS3	1
3693	COPS4	5.425306e-01
3694	COPS5	2.335917e-01
3695	COPS6	1
3696	COPS7A	1
3697	COPS7B	2.327733e-01
3698	COPS8	1
3699	COPZ1	2.622683e-01
3700	COPZ2	2.827033e-01
3701	COQ10A	1
3702	COQ10B	1
3703	COQ2	1
3704	COQ3	1
3705	COQ4	2.905952e-01
3706	COQ5	1
3707	COQ6	1
3708	COQ7	5.937862e-01
3709	COQ9	5.480898e-01
Done

Running MutSig 2:
Scatter job 41: processing genes 3620 - 3709
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
COL11A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.207343e-02	ci left: 2.761661e-01	ci right 2.939593e-01	k: 2850	n:10000
Cons ci ratio: 2.236025e-02	ci left: 7.459413e-01	ci right 7.629103e-01	k: 7545	n:10000
KS ci ratio: 8.908765e-02	ci left: 1.549259e-01	ci right 1.694715e-01	k: 1621	n:10000
COL11A1   10000 perm   3 sec   (3041 perm/sec)   p_kst 1.621000e-01   p_cons 7.545000e-01   p_joint 2.850000e-01

Outputting figure to mutsig2_images.part000000000041/COL11A1.45_5846_10000_0.1621_0.7545_0.285.png
                gene_name: COL11A1
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 2 percent done.
COL22A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.792416e-02	ci left: 8.195432e-01	ci right 8.344658e-01	k: 8271	n:10000
Cons ci ratio: 7.894111e-02	ci left: 1.899330e-01	ci right 2.056434e-01	k: 1977	n:10000
KS ci ratio: 1.176713e-02	ci left: 9.118323e-01	ci right 9.227232e-01	k: 9174	n:10000
COL22A1   10000 perm   3 sec   (3585 perm/sec)   p_kst 9.174000e-01   p_cons 1.977000e-01   p_joint 8.271000e-01

Outputting figure to mutsig2_images.part000000000041/COL22A1.33_5137_10000_0.9174_0.1977_0.8271.png
                gene_name: COL22A1
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 4 percent done.
COL24A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.650251e-01	ci left: 9.321618e-03	ci right 1.357016e-02	k: 113	n:10000
Cons ci ratio: 9.791669e-01	ci left: 8.397740e-04	ci right 2.472817e-03	k: 15	n:10000
KS ci ratio: 6.096528e-02	ci left: 2.834963e-01	ci right 3.014247e-01	k: 2924	n:10000
COL24A1   10000 perm   3 sec   (3833 perm/sec)   p_kst 2.924000e-01   p_cons 1.500000e-03   p_joint 1.130000e-02

Joint ci ratio: 3.871372e-01	ci left: 4.115134e-03	ci right 6.132872e-03	k: 101	n:20000
Cons ci ratio: 5.902971e-01	ci left: 1.556389e-03	ci right 2.894955e-03	k: 43	n:20000
KS ci ratio: 4.295861e-02	ci left: 2.875919e-01	ci right 3.002681e-01	k: 5878	n:20000
COL24A1   20000 perm   6 sec   (3522 perm/sec)   p_kst 2.939000e-01   p_cons 2.150000e-03   p_joint 5.050000e-03

Joint ci ratio: 3.632525e-01	ci left: 3.165816e-03	ci right 4.599568e-03	k: 115	n:30000
Cons ci ratio: 4.748229e-01	ci left: 1.731209e-03	ci right 2.835399e-03	k: 67	n:30000
KS ci ratio: 3.367589e-02	ci left: 3.058632e-01	ci right 3.163734e-01	k: 9333	n:30000
COL24A1   30000 perm   9 sec   (3396 perm/sec)   p_kst 3.111000e-01   p_cons 2.233333e-03   p_joint 3.833333e-03

Joint ci ratio: 2.404589e-01	ci left: 5.806474e-03	ci right 7.416412e-03	k: 263	n:40000
Cons ci ratio: 4.174083e-01	ci left: 1.742441e-03	ci right 2.682173e-03	k: 87	n:40000
KS ci ratio: 2.912737e-02	ci left: 3.071123e-01	ci right 3.162150e-01	k: 12466	n:40000
COL24A1   40000 perm   12 sec   (3327 perm/sec)   p_kst 3.116500e-01   p_cons 2.175000e-03   p_joint 6.575000e-03

Joint ci ratio: 2.198171e-01	ci left: 5.625264e-03	ci right 7.032976e-03	k: 315	n:50000
Cons ci ratio: 3.839838e-01	ci left: 1.681740e-03	ci right 2.497801e-03	k: 103	n:50000
KS ci ratio: 2.602654e-02	ci left: 3.080197e-01	ci right 3.161621e-01	k: 15604	n:50000
COL24A1   50000 perm   15 sec   (3268 perm/sec)   p_kst 3.120800e-01   p_cons 2.060000e-03   p_joint 6.300000e-03

Joint ci ratio: 2.276676e-01	ci left: 4.356993e-03	ci right 5.491709e-03	k: 294	n:60000
Cons ci ratio: 3.421151e-01	ci left: 1.810552e-03	ci right 2.572218e-03	k: 130	n:60000
KS ci ratio: 2.350400e-02	ci left: 3.130116e-01	ci right 3.204728e-01	k: 19004	n:60000
COL24A1   60000 perm   19 sec   (3218 perm/sec)   p_kst 3.167333e-01   p_cons 2.166667e-03   p_joint 4.900000e-03

Joint ci ratio: 1.877983e-01	ci left: 5.604672e-03	ci right 6.779684e-03	k: 432	n:70000
Cons ci ratio: 3.105207e-01	ci left: 1.919226e-03	ci right 2.637316e-03	k: 158	n:70000
KS ci ratio: 2.178456e-02	ci left: 3.128129e-01	ci right 3.197167e-01	k: 22138	n:70000
COL24A1   70000 perm   22 sec   (3170 perm/sec)   p_kst 3.162571e-01   p_cons 2.257143e-03   p_joint 6.171429e-03

Joint ci ratio: 1.867902e-01	ci left: 4.963500e-03	ci right 5.997860e-03	k: 437	n:80000
Cons ci ratio: 2.886519e-01	ci left: 1.968372e-03	ci right 2.643533e-03	k: 183	n:80000
KS ci ratio: 2.035036e-02	ci left: 3.136140e-01	ci right 3.200743e-01	k: 25347	n:80000
COL24A1   80000 perm   26 sec   (3125 perm/sec)   p_kst 3.168375e-01   p_cons 2.287500e-03   p_joint 5.462500e-03

Joint ci ratio: 1.769673e-01	ci left: 4.942271e-03	ci right 5.912248e-03	k: 487	n:90000
Cons ci ratio: 2.789811e-01	ci left: 1.883818e-03	ci right 2.504523e-03	k: 196	n:90000
KS ci ratio: 1.941261e-02	ci left: 3.087631e-01	ci right 3.148268e-01	k: 28061	n:90000
COL24A1   90000 perm   29 sec   (3077 perm/sec)   p_kst 3.117889e-01   p_cons 2.177778e-03   p_joint 5.411111e-03

Joint ci ratio: 1.729661e-01	ci left: 4.667913e-03	ci right 5.561162e-03	k: 510	n:100000
Cons ci ratio: 2.581784e-01	ci left: 2.003263e-03	ci right 2.606186e-03	k: 229	n:100000
KS ci ratio: 1.840527e-02	ci left: 3.091788e-01	ci right 3.149321e-01	k: 31205	n:100000
COL24A1   100000 perm   33 sec   (3034 perm/sec)   p_kst 3.120500e-01   p_cons 2.290000e-03   p_joint 5.100000e-03

Joint ci ratio: 1.700237e-01	ci left: 4.400117e-03	ci right 5.226325e-03	k: 528	n:110000
Cons ci ratio: 2.471446e-01	ci left: 1.999973e-03	ci right 2.572230e-03	k: 250	n:110000
KS ci ratio: 1.755974e-02	ci left: 3.090449e-01	ci right 3.145287e-01	k: 34296	n:110000
COL24A1   110000 perm   37 sec   (2999 perm/sec)   p_kst 3.117818e-01   p_cons 2.272727e-03   p_joint 4.800000e-03

Joint ci ratio: 1.678416e-01	ci left: 4.145128e-03	ci right 4.912453e-03	k: 542	n:120000
Cons ci ratio: 2.414515e-01	ci left: 1.927178e-03	ci right 2.464000e-03	k: 262	n:120000
KS ci ratio: 1.681051e-02	ci left: 3.092044e-01	ci right 3.144547e-01	k: 37419	n:120000
COL24A1   120000 perm   41 sec   (2957 perm/sec)   p_kst 3.118250e-01   p_cons 2.183333e-03   p_joint 4.516667e-03

Joint ci ratio: 1.638298e-01	ci left: 4.025324e-03	ci right 4.750903e-03	k: 569	n:130000
Cons ci ratio: 2.340115e-01	ci left: 1.901913e-03	ci right 2.413009e-03	k: 279	n:130000
KS ci ratio: 1.615690e-02	ci left: 3.091518e-01	ci right 3.141951e-01	k: 40517	n:130000
COL24A1   130000 perm   45 sec   (2917 perm/sec)   p_kst 3.116692e-01   p_cons 2.146154e-03   p_joint 4.376923e-03

Joint ci ratio: 1.734342e-01	ci left: 3.320353e-03	ci right 3.957620e-03	k: 508	n:140000
Cons ci ratio: 2.405748e-01	ci left: 1.665262e-03	ci right 2.127187e-03	k: 264	n:140000
KS ci ratio: 1.556187e-02	ci left: 3.094451e-01	ci right 3.143055e-01	k: 43662	n:140000
COL24A1   140000 perm   49 sec   (2875 perm/sec)   p_kst 3.118714e-01   p_cons 1.885714e-03   p_joint 3.628571e-03

Joint ci ratio: 1.750147e-01	ci left: 3.041574e-03	ci right 3.631215e-03	k: 499	n:150000
Cons ci ratio: 2.365987e-01	ci left: 1.610653e-03	ci right 2.048963e-03	k: 273	n:150000
KS ci ratio: 1.504395e-02	ci left: 3.092499e-01	ci right 3.139441e-01	k: 46739	n:150000
COL24A1   150000 perm   53 sec   (2808 perm/sec)   p_kst 3.115933e-01   p_cons 1.820000e-03   p_joint 3.326667e-03

Joint ci ratio: 1.750331e-01	ci left: 2.851451e-03	ci right 3.404297e-03	k: 499	n:160000
Cons ci ratio: 2.276338e-01	ci left: 1.639497e-03	ci right 2.066379e-03	k: 295	n:160000
KS ci ratio: 1.455925e-02	ci left: 3.095305e-01	ci right 3.140763e-01	k: 49888	n:160000
COL24A1   160000 perm   58 sec   (2761 perm/sec)   p_kst 3.118000e-01   p_cons 1.843750e-03   p_joint 3.118750e-03

Joint ci ratio: 1.714745e-01	ci left: 2.801885e-03	ci right 3.332933e-03	k: 520	n:170000
Cons ci ratio: 2.224373e-01	ci left: 1.620765e-03	ci right 2.031817e-03	k: 309	n:170000
KS ci ratio: 1.412669e-02	ci left: 3.095337e-01	ci right 3.139433e-01	k: 52995	n:170000
COL24A1   170000 perm   62 sec   (2739 perm/sec)   p_kst 3.117353e-01   p_cons 1.817647e-03   p_joint 3.058824e-03

Joint ci ratio: 1.723204e-01	ci left: 2.619620e-03	ci right 3.118827e-03	k: 515	n:180000
Cons ci ratio: 2.189392e-01	ci left: 1.583204e-03	ci right 1.977565e-03	k: 319	n:180000
KS ci ratio: 1.370993e-02	ci left: 3.101815e-01	ci right 3.144690e-01	k: 56218	n:180000
COL24A1   180000 perm   68 sec   (2660 perm/sec)   p_kst 3.123222e-01   p_cons 1.772222e-03   p_joint 2.861111e-03

Joint ci ratio: 1.399797e-01	ci left: 3.822713e-03	ci right 4.403104e-03	k: 780	n:190000
Cons ci ratio: 2.139830e-01	ci left: 1.574544e-03	ci right 1.956704e-03	k: 334	n:190000
KS ci ratio: 1.333581e-02	ci left: 3.105106e-01	ci right 3.146846e-01	k: 59393	n:190000
COL24A1   190000 perm   73 sec   (2594 perm/sec)   p_kst 3.125947e-01   p_cons 1.757895e-03   p_joint 4.105263e-03

Joint ci ratio: 1.357002e-01	ci left: 3.872963e-03	ci right 4.441556e-03	k: 830	n:200000
Cons ci ratio: 2.084558e-01	ci left: 1.581057e-03	ci right 1.953622e-03	k: 352	n:200000
KS ci ratio: 1.300873e-02	ci left: 3.102143e-01	ci right 3.142812e-01	k: 62449	n:200000
COL24A1   200000 perm   78 sec   (2569 perm/sec)   p_kst 3.122450e-01   p_cons 1.760000e-03   p_joint 4.150000e-03

Joint ci ratio: 1.370446e-01	ci left: 3.614912e-03	ci right 4.151306e-03	k: 814	n:210000
Cons ci ratio: 2.038872e-01	ci left: 1.578026e-03	ci right 1.940711e-03	k: 368	n:210000
KS ci ratio: 1.269896e-02	ci left: 3.101375e-01	ci right 3.141058e-01	k: 65545	n:210000
COL24A1   210000 perm   82 sec   (2551 perm/sec)   p_kst 3.121190e-01   p_cons 1.752381e-03   p_joint 3.876190e-03

Joint ci ratio: 1.374807e-01	ci left: 3.428629e-03	ci right 3.939131e-03	k: 809	n:220000
Cons ci ratio: 2.001278e-01	ci left: 1.566714e-03	ci right 1.919349e-03	k: 382	n:220000
KS ci ratio: 1.240426e-02	ci left: 3.102775e-01	ci right 3.141547e-01	k: 68687	n:220000
COL24A1   220000 perm   87 sec   (2533 perm/sec)   p_kst 3.122136e-01   p_cons 1.736364e-03   p_joint 3.677273e-03

Joint ci ratio: 1.215136e-01	ci left: 4.230552e-03	ci right 4.782049e-03	k: 1035	n:230000
Cons ci ratio: 1.946144e-01	ci left: 1.589524e-03	ci right 1.936269e-03	k: 404	n:230000
KS ci ratio: 1.212561e-02	ci left: 3.105321e-01	ci right 3.143248e-01	k: 71858	n:230000
COL24A1   230000 perm   91 sec   (2515 perm/sec)   p_kst 3.124261e-01   p_cons 1.756522e-03   p_joint 4.500000e-03

Joint ci ratio: 1.201354e-01	ci left: 4.151246e-03	ci right 4.685831e-03	k: 1059	n:240000
Cons ci ratio: 1.897556e-01	ci left: 1.606586e-03	ci right 1.947294e-03	k: 425	n:240000
KS ci ratio: 1.187610e-02	ci left: 3.103629e-01	ci right 3.140750e-01	k: 74932	n:240000
COL24A1   240000 perm   96 sec   (2497 perm/sec)   p_kst 3.122167e-01   p_cons 1.770833e-03   p_joint 4.412500e-03

Joint ci ratio: 1.183106e-01	ci left: 4.113255e-03	ci right 4.634338e-03	k: 1092	n:250000
Cons ci ratio: 1.850362e-01	ci left: 1.626196e-03	ci right 1.961524e-03	k: 447	n:250000
KS ci ratio: 1.162935e-02	ci left: 3.106513e-01	ci right 3.142891e-01	k: 78117	n:250000
COL24A1   250000 perm   101 sec   (2479 perm/sec)   p_kst 3.124680e-01   p_cons 1.788000e-03   p_joint 4.368000e-03

Joint ci ratio: 1.232900e-01	ci left: 3.634219e-03	ci right 4.115406e-03	k: 1006	n:260000
Cons ci ratio: 1.822125e-01	ci left: 1.615020e-03	ci right 1.942400e-03	k: 461	n:260000
KS ci ratio: 1.140543e-02	ci left: 3.106148e-01	ci right 3.141817e-01	k: 81223	n:260000
COL24A1   260000 perm   106 sec   (2459 perm/sec)   p_kst 3.123962e-01   p_cons 1.773077e-03   p_joint 3.869231e-03

Joint ci ratio: 1.222673e-01	ci left: 3.560639e-03	ci right 4.027890e-03	k: 1023	n:270000
Cons ci ratio: 1.785770e-01	ci left: 1.622398e-03	ci right 1.944003e-03	k: 480	n:270000
KS ci ratio: 1.119117e-02	ci left: 3.106890e-01	ci right 3.141891e-01	k: 84358	n:270000
COL24A1   270000 perm   111 sec   (2441 perm/sec)   p_kst 3.124370e-01   p_cons 1.777778e-03   p_joint 3.788889e-03

Joint ci ratio: 1.201735e-01	ci left: 3.558146e-03	ci right 4.016505e-03	k: 1059	n:280000
Cons ci ratio: 1.756796e-01	ci left: 1.619064e-03	ci right 1.934249e-03	k: 496	n:280000
KS ci ratio: 1.098489e-02	ci left: 3.109010e-01	ci right 3.143386e-01	k: 87533	n:280000
COL24A1   280000 perm   116 sec   (2422 perm/sec)   p_kst 3.126179e-01   p_cons 1.771429e-03   p_joint 3.782143e-03

Joint ci ratio: 1.200111e-01	ci left: 3.445473e-03	ci right 3.888675e-03	k: 1062	n:290000
Cons ci ratio: 1.715837e-01	ci left: 1.642399e-03	ci right 1.953900e-03	k: 520	n:290000
KS ci ratio: 1.079238e-02	ci left: 3.109888e-01	ci right 3.143667e-01	k: 90676	n:290000
COL24A1   290000 perm   121 sec   (2403 perm/sec)   p_kst 3.126759e-01   p_cons 1.793103e-03   p_joint 3.662069e-03

Joint ci ratio: 1.182454e-01	ci left: 3.434111e-03	ci right 3.868898e-03	k: 1094	n:300000
Cons ci ratio: 1.682260e-01	ci left: 1.654676e-03	ci right 1.961742e-03	k: 541	n:300000
KS ci ratio: 1.060669e-02	ci left: 3.111910e-01	ci right 3.145126e-01	k: 93855	n:300000
COL24A1   300000 perm   126 sec   (2384 perm/sec)   p_kst 3.128500e-01   p_cons 1.803333e-03   p_joint 3.646667e-03

Joint ci ratio: 1.202526e-01	ci left: 3.210645e-03	ci right 3.624530e-03	k: 1058	n:310000
Cons ci ratio: 1.657971e-01	ci left: 1.650755e-03	ci right 1.952229e-03	k: 557	n:310000
KS ci ratio: 1.043480e-02	ci left: 3.111938e-01	ci right 3.144613e-01	k: 96976	n:310000
COL24A1   310000 perm   131 sec   (2365 perm/sec)   p_kst 3.128258e-01   p_cons 1.796774e-03   p_joint 3.412903e-03

Joint ci ratio: 1.065427e-01	ci left: 3.987993e-03	ci right 4.439808e-03	k: 1347	n:320000
Cons ci ratio: 1.626213e-01	ci left: 1.665095e-03	ci right 1.962793e-03	k: 579	n:320000
KS ci ratio: 1.027093e-02	ci left: 3.112000e-01	ci right 3.144159e-01	k: 100098	n:320000
COL24A1   320000 perm   136 sec   (2346 perm/sec)   p_kst 3.128063e-01   p_cons 1.809375e-03   p_joint 4.209375e-03

Joint ci ratio: 1.062728e-01	ci left: 3.887782e-03	ci right 4.327057e-03	k: 1354	n:330000
Cons ci ratio: 1.604241e-01	ci left: 1.661162e-03	ci right 1.953758e-03	k: 595	n:330000
KS ci ratio: 1.012218e-02	ci left: 3.108824e-01	ci right 3.140482e-01	k: 103113	n:330000
COL24A1   330000 perm   142 sec   (2328 perm/sec)   p_kst 3.124636e-01   p_cons 1.803030e-03   p_joint 4.103030e-03

Joint ci ratio: 1.073585e-01	ci left: 3.696126e-03	ci right 4.118281e-03	k: 1327	n:340000
Cons ci ratio: 1.570336e-01	ci left: 1.685739e-03	ci right 1.975798e-03	k: 621	n:340000
KS ci ratio: 9.977108e-03	ci left: 3.106954e-01	ci right 3.138137e-01	k: 106166	n:340000
COL24A1   340000 perm   147 sec   (2311 perm/sec)   p_kst 3.122529e-01   p_cons 1.826471e-03   p_joint 3.902941e-03

Joint ci ratio: 1.059718e-01	ci left: 3.687853e-03	ci right 4.103284e-03	k: 1362	n:350000
Cons ci ratio: 1.548097e-01	ci left: 1.686998e-03	ci right 1.972780e-03	k: 639	n:350000
KS ci ratio: 9.830116e-03	ci left: 3.108675e-01	ci right 3.139413e-01	k: 109341	n:350000
COL24A1   350000 perm   153 sec   (2293 perm/sec)   p_kst 3.124029e-01   p_cons 1.825714e-03   p_joint 3.891429e-03

Joint ci ratio: 1.048258e-01	ci left: 3.666547e-03	ci right 4.074836e-03	k: 1392	n:360000
Cons ci ratio: 1.527939e-01	ci left: 1.685541e-03	ci right 1.967019e-03	k: 656	n:360000
KS ci ratio: 9.692817e-03	ci left: 3.108806e-01	ci right 3.139113e-01	k: 112462	n:360000
COL24A1   360000 perm   158 sec   (2275 perm/sec)   p_kst 3.123944e-01   p_cons 1.822222e-03   p_joint 3.866667e-03

Joint ci ratio: 9.673083e-02	ci left: 4.205100e-03	ci right 4.635151e-03	k: 1634	n:370000
Cons ci ratio: 1.505197e-01	ci left: 1.691989e-03	ci right 1.969960e-03	k: 676	n:370000
KS ci ratio: 9.563882e-03	ci left: 3.107691e-01	ci right 3.137582e-01	k: 115537	n:370000
COL24A1   370000 perm   164 sec   (2258 perm/sec)   p_kst 3.122622e-01   p_cons 1.827027e-03   p_joint 4.416216e-03

Joint ci ratio: 9.676621e-02	ci left: 4.091860e-03	ci right 4.510491e-03	k: 1633	n:380000
Cons ci ratio: 1.478139e-01	ci left: 1.710799e-03	ci right 1.986360e-03	k: 701	n:380000
KS ci ratio: 9.436546e-03	ci left: 3.108188e-01	ci right 3.137683e-01	k: 118671	n:380000
COL24A1   380000 perm   170 sec   (2241 perm/sec)   p_kst 3.122921e-01   p_cons 1.844737e-03   p_joint 4.297368e-03

Joint ci ratio: 9.710033e-02	ci left: 3.959406e-03	ci right 4.365964e-03	k: 1622	n:390000
Cons ci ratio: 1.455502e-01	ci left: 1.721273e-03	ci right 1.993906e-03	k: 723	n:390000
KS ci ratio: 9.319171e-03	ci left: 3.106357e-01	ci right 3.135466e-01	k: 121715	n:390000
COL24A1   390000 perm   175 sec   (2223 perm/sec)   p_kst 3.120897e-01   p_cons 1.853846e-03   p_joint 4.158974e-03

Joint ci ratio: 8.903683e-02	ci left: 4.607712e-03	ci right 5.039509e-03	k: 1928	n:400000
Cons ci ratio: 1.322236e-01	ci left: 2.047502e-03	ci right 2.339784e-03	k: 876	n:400000
KS ci ratio: 9.199743e-03	ci left: 3.107566e-01	ci right 3.136311e-01	k: 124877	n:400000
COL24A1   400000 perm   181 sec   (2205 perm/sec)   p_kst 3.121925e-01   p_cons 2.190000e-03   p_joint 4.820000e-03

Joint ci ratio: 8.826393e-02	ci left: 4.576414e-03	ci right 5.001363e-03	k: 1962	n:410000
Cons ci ratio: 1.308879e-01	ci left: 2.040020e-03	ci right 2.328064e-03	k: 894	n:410000
KS ci ratio: 9.083709e-03	ci left: 3.109230e-01	ci right 3.137626e-01	k: 128060	n:410000
COL24A1   410000 perm   187 sec   (2188 perm/sec)   p_kst 3.123415e-01   p_cons 2.180488e-03   p_joint 4.785366e-03

Joint ci ratio: 8.751078e-02	ci left: 4.546622e-03	ci right 4.965017e-03	k: 1996	n:420000
Cons ci ratio: 1.294498e-01	ci left: 2.037516e-03	ci right 2.321803e-03	k: 914	n:420000
KS ci ratio: 8.973249e-03	ci left: 3.110198e-01	ci right 3.138256e-01	k: 131217	n:420000
COL24A1   420000 perm   193 sec   (2171 perm/sec)   p_kst 3.124214e-01   p_cons 2.176190e-03   p_joint 4.752381e-03

Joint ci ratio: 8.820612e-02	ci left: 4.370360e-03	ci right 4.775895e-03	k: 1965	n:430000
Cons ci ratio: 1.275804e-01	ci left: 2.050905e-03	ci right 2.332615e-03	k: 941	n:430000
KS ci ratio: 8.868019e-03	ci left: 3.110497e-01	ci right 3.138226e-01	k: 134347	n:430000
COL24A1   430000 perm   200 sec   (2155 perm/sec)   p_kst 3.124349e-01   p_cons 2.188372e-03   p_joint 4.569767e-03

Joint ci ratio: 8.752029e-02	ci left: 4.339937e-03	ci right 4.739358e-03	k: 1996	n:440000
Cons ci ratio: 1.262475e-01	ci left: 2.048305e-03	ci right 2.326498e-03	k: 961	n:440000
KS ci ratio: 8.763253e-03	ci left: 3.112327e-01	ci right 3.139743e-01	k: 137545	n:440000
COL24A1   440000 perm   206 sec   (2138 perm/sec)   p_kst 3.126023e-01   p_cons 2.184091e-03   p_joint 4.536364e-03

Joint ci ratio: 8.781228e-02	ci left: 4.215227e-03	ci right 4.604530e-03	k: 1983	n:450000
Cons ci ratio: 1.247013e-01	ci left: 2.054446e-03	ci right 2.329804e-03	k: 985	n:450000
KS ci ratio: 8.667535e-03	ci left: 3.111392e-01	ci right 3.138499e-01	k: 140622	n:450000
COL24A1   450000 perm   212 sec   (2122 perm/sec)   p_kst 3.124933e-01   p_cons 2.188889e-03   p_joint 4.406667e-03

Joint ci ratio: 8.691907e-02	ci left: 4.210774e-03	ci right 4.595509e-03	k: 2024	n:460000
Cons ci ratio: 1.238884e-01	ci left: 2.037166e-03	ci right 2.308296e-03	k: 998	n:460000
KS ci ratio: 8.574365e-03	ci left: 3.110760e-01	ci right 3.137568e-01	k: 143711	n:460000
COL24A1   460000 perm   218 sec   (2107 perm/sec)   p_kst 3.124152e-01   p_cons 2.169565e-03   p_joint 4.400000e-03

Joint ci ratio: 8.651646e-02	ci left: 4.160727e-03	ci right 4.539040e-03	k: 2043	n:470000
Cons ci ratio: 1.227272e-01	ci left: 2.033000e-03	ci right 2.300856e-03	k: 1017	n:470000
KS ci ratio: 8.483967e-03	ci left: 3.110241e-01	ci right 3.136761e-01	k: 146804	n:470000
COL24A1   470000 perm   225 sec   (2091 perm/sec)   p_kst 3.123489e-01   p_cons 2.163830e-03   p_joint 4.346809e-03

Joint ci ratio: 8.582735e-02	ci left: 4.141312e-03	ci right 4.514710e-03	k: 2076	n:480000
Cons ci ratio: 1.215393e-01	ci left: 2.031039e-03	ci right 2.295861e-03	k: 1037	n:480000
KS ci ratio: 8.399181e-03	ci left: 3.108309e-01	ci right 3.134547e-01	k: 149828	n:480000
COL24A1   480000 perm   231 sec   (2075 perm/sec)   p_kst 3.121417e-01   p_cons 2.160417e-03   p_joint 4.325000e-03

Joint ci ratio: 8.505329e-02	ci left: 4.132689e-03	ci right 4.501781e-03	k: 2114	n:490000
Cons ci ratio: 1.200446e-01	ci left: 2.041048e-03	ci right 2.303669e-03	k: 1063	n:490000
KS ci ratio: 8.311075e-03	ci left: 3.109454e-01	ci right 3.135425e-01	k: 152999	n:490000
COL24A1   490000 perm   238 sec   (2059 perm/sec)   p_kst 3.122429e-01   p_cons 2.169388e-03   p_joint 4.314286e-03

Joint ci ratio: 8.437856e-02	ci left: 4.116593e-03	ci right 4.481188e-03	k: 2148	n:500000
Cons ci ratio: 1.189323e-01	ci left: 2.039031e-03	ci right 2.298791e-03	k: 1083	n:500000
KS ci ratio: 8.227562e-03	ci left: 3.109576e-01	ci right 3.135286e-01	k: 156121	n:500000
COL24A1   500000 perm   245 sec   (2044 perm/sec)   p_kst 3.122420e-01   p_cons 2.166000e-03   p_joint 4.296000e-03

Joint ci ratio: 8.402946e-02	ci left: 4.070422e-03	ci right 4.429363e-03	k: 2166	n:510000
Cons ci ratio: 1.175306e-01	ci left: 2.048524e-03	ci right 2.306204e-03	k: 1109	n:510000
KS ci ratio: 8.148339e-03	ci left: 3.108735e-01	ci right 3.134189e-01	k: 159194	n:510000
COL24A1   510000 perm   251 sec   (2029 perm/sec)   p_kst 3.121451e-01   p_cons 2.174510e-03   p_joint 4.247059e-03

Joint ci ratio: 8.320792e-02	ci left: 4.073108e-03	ci right 4.428604e-03	k: 2209	n:520000
Cons ci ratio: 1.167452e-01	ci left: 2.037129e-03	ci right 2.291545e-03	k: 1124	n:520000
KS ci ratio: 8.075376e-03	ci left: 3.105795e-01	ci right 3.130996e-01	k: 162156	n:520000
COL24A1   520000 perm   258 sec   (2014 perm/sec)   p_kst 3.118385e-01   p_cons 2.161538e-03   p_joint 4.248077e-03

Joint ci ratio: 8.272403e-02	ci left: 4.044293e-03	ci right 4.395122e-03	k: 2235	n:530000
Cons ci ratio: 1.152182e-01	ci left: 2.053656e-03	ci right 2.306553e-03	k: 1154	n:530000
KS ci ratio: 7.998704e-03	ci left: 3.105982e-01	ci right 3.130944e-01	k: 165278	n:530000
COL24A1   530000 perm   265 sec   (1999 perm/sec)   p_kst 3.118453e-01   p_cons 2.177358e-03   p_joint 4.216981e-03

Joint ci ratio: 7.832848e-02	ci left: 4.435782e-03	ci right 4.799194e-03	k: 2492	n:540000
Cons ci ratio: 1.138941e-01	ci left: 2.064193e-03	ci right 2.315270e-03	k: 1181	n:540000
KS ci ratio: 7.924381e-03	ci left: 3.106053e-01	ci right 3.130782e-01	k: 168394	n:540000
COL24A1   540000 perm   272 sec   (1985 perm/sec)   p_kst 3.118407e-01   p_cons 2.187037e-03   p_joint 4.614815e-03

Joint ci ratio: 7.792463e-02	ci left: 4.401477e-03	ci right 4.760136e-03	k: 2518	n:550000
Cons ci ratio: 1.127549e-01	ci left: 2.069062e-03	ci right 2.318047e-03	k: 1205	n:550000
KS ci ratio: 7.850661e-03	ci left: 3.106903e-01	ci right 3.131408e-01	k: 171553	n:550000
COL24A1   550000 perm   279 sec   (1971 perm/sec)   p_kst 3.119145e-01   p_cons 2.190909e-03   p_joint 4.578182e-03

Joint ci ratio: 7.871647e-02	ci left: 4.235328e-03	ci right 4.584115e-03	k: 2468	n:560000
Cons ci ratio: 1.116947e-01	ci left: 2.072033e-03	ci right 2.318877e-03	k: 1228	n:560000
KS ci ratio: 7.783299e-03	ci left: 3.105333e-01	ci right 3.129615e-01	k: 174578	n:560000
COL24A1   560000 perm   286 sec   (1956 perm/sec)   p_kst 3.117464e-01   p_cons 2.192857e-03   p_joint 4.407143e-03

Joint ci ratio: 7.146430e-02	ci left: 5.063173e-03	ci right 5.440128e-03	k: 2992	n:570000
Cons ci ratio: 1.106197e-01	ci left: 2.076616e-03	ci right 2.321470e-03	k: 1252	n:570000
KS ci ratio: 7.712562e-03	ci left: 3.106641e-01	ci right 3.130711e-01	k: 177764	n:570000
COL24A1   570000 perm   294 sec   (1941 perm/sec)   p_kst 3.118667e-01   p_cons 2.196491e-03   p_joint 5.249123e-03

Joint ci ratio: 6.523056e-02	ci left: 5.986025e-03	ci right 6.391345e-03	k: 3588	n:580000
Cons ci ratio: 1.123884e-01	ci left: 1.975441e-03	ci right 2.212335e-03	k: 1213	n:580000
KS ci ratio: 7.646205e-03	ci left: 3.106510e-01	ci right 3.130371e-01	k: 180869	n:580000
COL24A1   580000 perm   301 sec   (1926 perm/sec)   p_kst 3.118431e-01   p_cons 2.091379e-03   p_joint 6.186207e-03

Joint ci ratio: 6.518833e-02	ci left: 5.892894e-03	ci right 6.291640e-03	k: 3593	n:590000
Cons ci ratio: 1.108902e-01	ci left: 1.996330e-03	ci right 2.232330e-03	k: 1246	n:590000
KS ci ratio: 7.582401e-03	ci left: 3.105893e-01	ci right 3.129549e-01	k: 183945	n:590000
COL24A1   590000 perm   308 sec   (1913 perm/sec)   p_kst 3.117712e-01   p_cons 2.111864e-03   p_joint 6.089831e-03

Joint ci ratio: 6.555970e-02	ci left: 5.729087e-03	ci right 6.119041e-03	k: 3553	n:600000
Cons ci ratio: 1.103613e-01	ci left: 1.982504e-03	ci right 2.215679e-03	k: 1258	n:600000
KS ci ratio: 7.518795e-03	ci left: 3.106080e-01	ci right 3.129538e-01	k: 187068	n:600000
COL24A1   600000 perm   316 sec   (1900 perm/sec)   p_kst 3.117800e-01   p_cons 2.096667e-03   p_joint 5.921667e-03

Joint ci ratio: 6.626993e-02	ci left: 5.514223e-03	ci right 5.893774e-03	k: 3478	n:610000
Cons ci ratio: 1.094094e-01	ci left: 1.985078e-03	ci right 2.216412e-03	k: 1280	n:610000
KS ci ratio: 7.456108e-03	ci left: 3.106638e-01	ci right 3.129904e-01	k: 190214	n:610000
COL24A1   610000 perm   323 sec   (1887 perm/sec)   p_kst 3.118262e-01   p_cons 2.098361e-03   p_joint 5.701639e-03

Joint ci ratio: 6.569627e-02	ci left: 5.522048e-03	ci right 5.898722e-03	k: 3539	n:620000
Cons ci ratio: 1.083984e-01	ci left: 1.990717e-03	ci right 2.220427e-03	k: 1304	n:620000
KS ci ratio: 7.394824e-03	ci left: 3.107260e-01	ci right 3.130338e-01	k: 193365	n:620000
COL24A1   620000 perm   331 sec   (1874 perm/sec)   p_kst 3.118790e-01   p_cons 2.103226e-03   p_joint 5.708065e-03

Joint ci ratio: 6.511906e-02	ci left: 5.532762e-03	ci right 5.906726e-03	k: 3602	n:630000
Cons ci ratio: 1.071326e-01	ci left: 2.006999e-03	ci right 2.235713e-03	k: 1335	n:630000
KS ci ratio: 7.335868e-03	ci left: 3.107371e-01	ci right 3.130266e-01	k: 196485	n:630000
COL24A1   630000 perm   338 sec   (1861 perm/sec)   p_kst 3.118810e-01   p_cons 2.119048e-03   p_joint 5.717460e-03

Joint ci ratio: 6.485103e-02	ci left: 5.492422e-03	ci right 5.862074e-03	k: 3632	n:640000
Cons ci ratio: 1.063004e-01	ci left: 2.007576e-03	ci right 2.234468e-03	k: 1356	n:640000
KS ci ratio: 7.276737e-03	ci left: 3.108400e-01	ci right 3.131117e-01	k: 199664	n:640000
COL24A1   640000 perm   346 sec   (1849 perm/sec)   p_kst 3.119750e-01   p_cons 2.118750e-03   p_joint 5.675000e-03

Joint ci ratio: 6.480904e-02	ci left: 5.415484e-03	ci right 5.779713e-03	k: 3637	n:650000
Cons ci ratio: 1.054873e-01	ci left: 2.008142e-03	ci right 2.233255e-03	k: 1377	n:650000
KS ci ratio: 7.219401e-03	ci left: 3.109168e-01	ci right 3.131710e-01	k: 202828	n:650000
COL24A1   650000 perm   354 sec   (1835 perm/sec)   p_kst 3.120431e-01   p_cons 2.118462e-03   p_joint 5.595385e-03

Joint ci ratio: 6.450939e-02	ci left: 5.384111e-03	ci right 5.744493e-03	k: 3671	n:660000
Cons ci ratio: 1.046177e-01	ci left: 2.011649e-03	ci right 2.235181e-03	k: 1400	n:660000
KS ci ratio: 7.163955e-03	ci left: 3.109580e-01	ci right 3.131952e-01	k: 205970	n:660000
COL24A1   660000 perm   362 sec   (1822 perm/sec)   p_kst 3.120758e-01   p_cons 2.121212e-03   p_joint 5.562121e-03

Joint ci ratio: 6.423126e-02	ci left: 5.350740e-03	ci right 5.707287e-03	k: 3703	n:670000
Cons ci ratio: 1.039523e-01	ci left: 2.007789e-03	ci right 2.229387e-03	k: 1418	n:670000
KS ci ratio: 7.106086e-03	ci left: 3.112202e-01	ci right 3.134411e-01	k: 209261	n:670000
COL24A1   670000 perm   370 sec   (1810 perm/sec)   p_kst 3.123299e-01   p_cons 2.116418e-03   p_joint 5.526866e-03

Joint ci ratio: 6.322902e-02	ci left: 5.442825e-03	ci right 5.799642e-03	k: 3821	n:680000
Cons ci ratio: 1.034077e-01	ci left: 1.999749e-03	ci right 2.219233e-03	k: 1433	n:680000
KS ci ratio: 7.051791e-03	ci left: 3.113411e-01	ci right 3.135458e-01	k: 212461	n:680000
COL24A1   680000 perm   378 sec   (1798 perm/sec)   p_kst 3.124426e-01   p_cons 2.107353e-03   p_joint 5.619118e-03

Joint ci ratio: 6.288510e-02	ci left: 5.423852e-03	ci right 5.777420e-03	k: 3863	n:690000
Cons ci ratio: 1.029784e-01	ci left: 1.987709e-03	ci right 2.204911e-03	k: 1445	n:690000
KS ci ratio: 6.999617e-03	ci left: 3.114035e-01	ci right 3.135923e-01	k: 215623	n:690000
COL24A1   690000 perm   386 sec   (1787 perm/sec)   p_kst 3.124971e-01   p_cons 2.094203e-03   p_joint 5.598551e-03

Joint ci ratio: 6.241829e-02	ci left: 5.427928e-03	ci right 5.779040e-03	k: 3921	n:700000
Cons ci ratio: 1.024137e-01	ci left: 1.981583e-03	ci right 2.196856e-03	k: 1461	n:700000
KS ci ratio: 6.948909e-03	ci left: 3.114442e-01	ci right 3.136173e-01	k: 218771	n:700000
COL24A1   700000 perm   394 sec   (1775 perm/sec)   p_kst 3.125300e-01   p_cons 2.087143e-03   p_joint 5.601429e-03

Joint ci ratio: 6.222167e-02	ci left: 5.386137e-03	ci right 5.733409e-03	k: 3946	n:710000
Cons ci ratio: 1.018582e-01	ci left: 1.975633e-03	ci right 2.189026e-03	k: 1477	n:710000
KS ci ratio: 6.899919e-03	ci left: 3.114444e-01	ci right 3.136022e-01	k: 221891	n:710000
COL24A1   710000 perm   403 sec   (1763 perm/sec)   p_kst 3.125225e-01   p_cons 2.080282e-03   p_joint 5.557746e-03

Joint ci ratio: 5.643281e-02	ci left: 6.469036e-03	ci right 6.846061e-03	k: 4792	n:720000
Cons ci ratio: 1.011422e-01	ci left: 1.976620e-03	ci right 2.188529e-03	k: 1498	n:720000
KS ci ratio: 6.940696e-03	ci left: 3.059472e-01	ci right 3.080794e-01	k: 221049	n:720000
COL24A1   720000 perm   411 sec   (1752 perm/sec)   p_kst 3.070125e-01   p_cons 2.080556e-03   p_joint 6.655556e-03

Joint ci ratio: 5.605987e-02	ci left: 6.466857e-03	ci right 6.841184e-03	k: 4856	n:730000
Cons ci ratio: 1.004742e-01	ci left: 1.976249e-03	ci right 2.186637e-03	k: 1518	n:730000
KS ci ratio: 6.893573e-03	ci left: 3.059187e-01	ci right 3.080362e-01	k: 224093	n:730000
COL24A1   730000 perm   419 sec   (1741 perm/sec)   p_kst 3.069767e-01   p_cons 2.079452e-03   p_joint 6.652055e-03

Joint ci ratio: 5.614392e-02	ci left: 6.360804e-03	ci right 6.729562e-03	k: 4842	n:740000
Cons ci ratio: 9.972192e-02	ci left: 1.979846e-03	ci right 2.188947e-03	k: 1541	n:740000
KS ci ratio: 6.847093e-03	ci left: 3.059100e-01	ci right 3.080131e-01	k: 227151	n:740000
COL24A1   740000 perm   428 sec   (1729 perm/sec)   p_kst 3.069608e-01   p_cons 2.082432e-03   p_joint 6.543243e-03

Outputting figure to mutsig2_images.part000000000041/COL24A1.20_5385_740000_0.30696_0.0020824_0.0065432.png
                gene_name: COL24A1
               theta_stop: 0.100 
                    nperm: 740000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.0021 
      ci_cons_bounds_left: 0.0020 
     ci_cons_bounds_right: 0.0022 
                  p_joint: 0.0065 
     ci_joint_bounds_left: 0.0064 
    ci_joint_bounds_right: 0.0067 

Current progress: 5 percent done.
COL6A6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 1.728722e-01	ci left: 4.465920e-02	ci right 5.320602e-02	k: 488	n:10000
KS ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
COL6A6   10000 perm   3 sec   (3709 perm/sec)   p_kst 1.000000e-04   p_cons 4.880000e-02   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 1.237799e-01	ci left: 4.478715e-02	ci right 5.074522e-02	k: 954	n:20000
KS ci ratio: 2.262987e+00	ci left: 1.211069e-05	ci right 3.611872e-04	k: 2	n:20000
COL6A6   20000 perm   6 sec   (3439 perm/sec)   p_kst 1.000000e-04   p_cons 4.770000e-02   p_joint 0

Joint ci ratio: 3.919869e+00	ci left: 0	ci right 1.229551e-04	k: 0	n:30000
Cons ci ratio: 9.984660e-02	ci left: 4.642167e-02	ci right 5.133284e-02	k: 1465	n:30000
KS ci ratio: 1.600147e+00	ci left: 5.411836e-05	ci right 3.889012e-04	k: 5	n:30000
COL6A6   30000 perm   9 sec   (3327 perm/sec)   p_kst 1.666667e-04   p_cons 4.883333e-02   p_joint 0

Joint ci ratio: 3.919902e+00	ci left: 0	ci right 9.221773e-05	k: 0	n:40000
Cons ci ratio: 8.572714e-02	ci left: 4.754153e-02	ci right 5.182415e-02	k: 1986	n:40000
KS ci ratio: 1.385773e+00	ci left: 7.036188e-05	ci right 3.605334e-04	k: 7	n:40000
COL6A6   40000 perm   12 sec   (3259 perm/sec)   p_kst 1.750000e-04   p_cons 4.965000e-02   p_joint 0

Joint ci ratio: 4.083080e-01	ci left: 1.465596e-03	ci right 2.234093e-03	k: 91	n:50000
Cons ci ratio: 7.591999e-02	ci left: 4.869498e-02	ci right 5.255741e-02	k: 2530	n:50000
KS ci ratio: 1.239476e+00	ci left: 8.231066e-05	ci right 3.416684e-04	k: 9	n:50000
COL6A6   50000 perm   16 sec   (3200 perm/sec)   p_kst 1.800000e-04   p_cons 5.060000e-02   p_joint 1.820000e-03

Joint ci ratio: 4.128908e-01	ci left: 1.191403e-03	ci right 1.825057e-03	k: 89	n:60000
Cons ci ratio: 6.997765e-02	ci left: 4.795817e-02	ci right 5.145222e-02	k: 2981	n:60000
KS ci ratio: 1.239499e+00	ci left: 6.859177e-05	ci right 2.847275e-04	k: 9	n:60000
COL6A6   60000 perm   19 sec   (3147 perm/sec)   p_kst 1.500000e-04   p_cons 4.968333e-02   p_joint 1.483333e-03

Joint ci ratio: 4.084167e-01	ci left: 1.046804e-03	ci right 1.595876e-03	k: 91	n:70000
Cons ci ratio: 6.481620e-02	ci left: 4.804535e-02	ci right 5.127782e-02	k: 3475	n:70000
KS ci ratio: 1.239515e+00	ci left: 5.879268e-05	ci right 2.440545e-04	k: 9	n:70000
COL6A6   70000 perm   23 sec   (3102 perm/sec)   p_kst 1.285714e-04   p_cons 4.964286e-02   p_joint 1.300000e-03

Joint ci ratio: 4.249551e-01	ci left: 8.376049e-04	ci right 1.299809e-03	k: 84	n:80000
Cons ci ratio: 6.082826e-02	ci left: 4.784688e-02	ci right 5.086091e-02	k: 3947	n:80000
KS ci ratio: 1.131515e+00	ci left: 6.864144e-05	ci right 2.460121e-04	k: 11	n:80000
COL6A6   80000 perm   26 sec   (3060 perm/sec)   p_kst 1.375000e-04   p_cons 4.933750e-02   p_joint 1.050000e-03

Joint ci ratio: 4.200626e-01	ci left: 7.643900e-04	ci right 1.179971e-03	k: 86	n:90000
Cons ci ratio: 5.727828e-02	ci left: 4.804803e-02	ci right 5.089221e-02	k: 4451	n:90000
KS ci ratio: 1.131525e+00	ci left: 6.101442e-05	ci right 2.186788e-04	k: 11	n:90000
COL6A6   90000 perm   30 sec   (3021 perm/sec)   p_kst 1.222222e-04   p_cons 4.945556e-02   p_joint 9.555556e-04

Joint ci ratio: 4.586315e-01	ci left: 5.633970e-04	ci right 9.066362e-04	k: 72	n:100000
Cons ci ratio: 5.439492e-02	ci left: 4.802549e-02	ci right 5.072072e-02	k: 4936	n:100000
KS ci ratio: 1.047585e+00	ci left: 6.922128e-05	ci right 2.222937e-04	k: 13	n:100000
COL6A6   100000 perm   34 sec   (2981 perm/sec)   p_kst 1.300000e-04   p_cons 4.936000e-02   p_joint 7.200000e-04

Joint ci ratio: 4.381079e-01	ci left: 5.686313e-04	ci right 8.949897e-04	k: 79	n:110000
Cons ci ratio: 5.179685e-02	ci left: 4.820756e-02	ci right 5.077990e-02	k: 5443	n:110000
KS ci ratio: 1.047593e+00	ci left: 6.292829e-05	ci right 2.020860e-04	k: 13	n:110000
COL6A6   110000 perm   37 sec   (2947 perm/sec)   p_kst 1.181818e-04   p_cons 4.948182e-02   p_joint 7.181818e-04

Joint ci ratio: 4.275556e-01	ci left: 5.509451e-04	ci right 8.573538e-04	k: 83	n:120000
Cons ci ratio: 4.938174e-02	ci left: 4.865830e-02	ci right 5.113017e-02	k: 5986	n:120000
KS ci ratio: 1.012072e+00	ci left: 6.378417e-05	ci right 1.957391e-04	k: 14	n:120000
COL6A6   120000 perm   41 sec   (2908 perm/sec)   p_kst 1.166667e-04   p_cons 4.988333e-02   p_joint 6.916667e-04

Joint ci ratio: 4.085420e-01	ci left: 5.636326e-04	ci right 8.593764e-04	k: 91	n:130000
Cons ci ratio: 4.736349e-02	ci left: 4.886710e-02	ci right 5.124533e-02	k: 6506	n:130000
KS ci ratio: 1.012077e+00	ci left: 5.887760e-05	ci right 1.806828e-04	k: 14	n:130000
COL6A6   130000 perm   45 sec   (2871 perm/sec)   p_kst 1.076923e-04   p_cons 5.004615e-02   p_joint 7.000000e-04

Joint ci ratio: 3.999447e-01	ci left: 5.490384e-04	ci right 8.294558e-04	k: 95	n:140000
Cons ci ratio: 4.564588e-02	ci left: 4.889944e-02	ci right 5.119067e-02	k: 7005	n:140000
KS ci ratio: 1.012082e+00	ci left: 5.467197e-05	ci right 1.677773e-04	k: 14	n:140000
COL6A6   140000 perm   49 sec   (2837 perm/sec)   p_kst 1.000000e-04   p_cons 5.003571e-02   p_joint 6.785714e-04

Joint ci ratio: 4.250618e-01	ci left: 4.467018e-04	ci right 6.932719e-04	k: 84	n:150000
Cons ci ratio: 4.401310e-02	ci left: 4.912014e-02	ci right 5.133729e-02	k: 7533	n:150000
KS ci ratio: 1.012086e+00	ci left: 5.102711e-05	ci right 1.565925e-04	k: 14	n:150000
COL6A6   150000 perm   54 sec   (2803 perm/sec)   p_kst 9.333333e-05   p_cons 5.022000e-02   p_joint 5.600000e-04

Joint ci ratio: 4.063656e-01	ci left: 4.635555e-04	ci right 7.051405e-04	k: 92	n:160000
Cons ci ratio: 4.267499e-02	ci left: 4.902374e-02	ci right 5.116760e-02	k: 8014	n:160000
KS ci ratio: 9.506862e-01	ci left: 5.715969e-05	ci right 1.623887e-04	k: 16	n:160000
COL6A6   160000 perm   58 sec   (2771 perm/sec)   p_kst 1.000000e-04   p_cons 5.008750e-02   p_joint 5.750000e-04

Joint ci ratio: 3.958645e-01	ci left: 4.627322e-04	ci right 6.960256e-04	k: 97	n:170000
Cons ci ratio: 4.135723e-02	ci left: 4.915510e-02	ci right 5.123674e-02	k: 8532	n:170000
KS ci ratio: 9.506893e-01	ci left: 5.379729e-05	ci right 1.528367e-04	k: 16	n:170000
COL6A6   170000 perm   62 sec   (2740 perm/sec)   p_kst 9.411765e-05   p_cons 5.018824e-02   p_joint 5.705882e-04

Joint ci ratio: 3.899440e-01	ci left: 4.520443e-04	ci right 6.756638e-04	k: 100	n:180000
Cons ci ratio: 4.020593e-02	ci left: 4.915171e-02	ci right 5.117392e-02	k: 9028	n:180000
KS ci ratio: 9.506921e-01	ci left: 5.080851e-05	ci right 1.443460e-04	k: 16	n:180000
COL6A6   180000 perm   66 sec   (2709 perm/sec)   p_kst 8.888889e-05   p_cons 5.015556e-02   p_joint 5.555556e-04

Joint ci ratio: 3.824461e-01	ci left: 4.472609e-04	ci right 6.631900e-04	k: 104	n:190000
Cons ci ratio: 3.923035e-02	ci left: 4.894604e-02	ci right 5.090982e-02	k: 9485	n:190000
KS ci ratio: 9.506946e-01	ci left: 4.813433e-05	ci right 1.367490e-04	k: 16	n:190000
COL6A6   190000 perm   71 sec   (2680 perm/sec)   p_kst 8.421053e-05   p_cons 4.992105e-02   p_joint 5.473684e-04

Joint ci ratio: 3.703005e-01	ci left: 4.565880e-04	ci right 6.683253e-04	k: 111	n:200000
Cons ci ratio: 3.826579e-02	ci left: 4.890022e-02	ci right 5.081285e-02	k: 9970	n:200000
KS ci ratio: 8.356988e-01	ci left: 6.499779e-05	ci right 1.604992e-04	k: 21	n:200000
COL6A6   200000 perm   75 sec   (2654 perm/sec)   p_kst 1.050000e-04   p_cons 4.985000e-02   p_joint 5.550000e-04

Joint ci ratio: 3.670411e-01	ci left: 4.434866e-04	ci right 6.469037e-04	k: 113	n:210000
Cons ci ratio: 3.732586e-02	ci left: 4.896785e-02	ci right 5.083507e-02	k: 10478	n:210000
KS ci ratio: 8.173298e-01	ci left: 6.565486e-05	ci right 1.586065e-04	k: 22	n:210000
COL6A6   210000 perm   80 sec   (2627 perm/sec)   p_kst 1.047619e-04   p_cons 4.989524e-02   p_joint 5.380952e-04

Joint ci ratio: 3.686670e-01	ci left: 4.192018e-04	ci right 6.125370e-04	k: 112	n:220000
Cons ci ratio: 3.647818e-02	ci left: 4.896227e-02	ci right 5.078598e-02	k: 10971	n:220000
KS ci ratio: 7.839537e-01	ci left: 6.989781e-05	ci right 1.623143e-04	k: 24	n:220000
COL6A6   220000 perm   85 sec   (2601 perm/sec)   p_kst 1.090909e-04   p_cons 4.986818e-02   p_joint 5.090909e-04

Joint ci ratio: 3.771128e-01	ci left: 3.812721e-04	ci right 5.621403e-04	k: 107	n:230000
Cons ci ratio: 3.564813e-02	ci left: 4.905676e-02	ci right 5.084156e-02	k: 11487	n:230000
KS ci ratio: 7.839557e-01	ci left: 6.685873e-05	ci right 1.552573e-04	k: 24	n:230000
COL6A6   230000 perm   89 sec   (2575 perm/sec)   p_kst 1.043478e-04   p_cons 4.994348e-02   p_joint 4.652174e-04

Joint ci ratio: 3.703180e-01	ci left: 3.804870e-04	ci right 5.569430e-04	k: 111	n:240000
Cons ci ratio: 3.488910e-02	ci left: 4.909835e-02	ci right 5.084587e-02	k: 11992	n:240000
KS ci ratio: 7.687320e-01	ci left: 6.741227e-05	ci right 1.537667e-04	k: 25	n:240000
COL6A6   240000 perm   94 sec   (2549 perm/sec)   p_kst 1.041667e-04   p_cons 4.996667e-02   p_joint 4.625000e-04

Joint ci ratio: 4.251106e-01	ci left: 2.680153e-04	ci right 4.159742e-04	k: 84	n:250000
Cons ci ratio: 3.416939e-02	ci left: 4.915683e-02	ci right 5.086962e-02	k: 12502	n:250000
KS ci ratio: 7.687337e-01	ci left: 6.471574e-05	ci right 1.476162e-04	k: 25	n:250000
COL6A6   250000 perm   99 sec   (2523 perm/sec)   p_kst 1.000000e-04   p_cons 5.000800e-02   p_joint 3.360000e-04

Joint ci ratio: 3.437201e-01	ci left: 4.142501e-04	ci right 5.895055e-04	k: 129	n:260000
Cons ci ratio: 3.517384e-02	ci left: 4.478982e-02	ci right 4.639725e-02	k: 11853	n:260000
KS ci ratio: 7.687353e-01	ci left: 6.222664e-05	ci right 1.419388e-04	k: 25	n:260000
COL6A6   260000 perm   104 sec   (2499 perm/sec)   p_kst 9.615385e-05   p_cons 4.558846e-02   p_joint 4.961538e-04

Joint ci ratio: 3.607857e-01	ci left: 3.583912e-04	ci right 5.193163e-04	k: 117	n:270000
Cons ci ratio: 3.446199e-02	ci left: 4.494103e-02	ci right 4.652059e-02	k: 12346	n:270000
KS ci ratio: 7.407706e-01	ci left: 6.590163e-05	ci right 1.454914e-04	k: 27	n:270000
COL6A6   270000 perm   109 sec   (2475 perm/sec)   p_kst 1.000000e-04   p_cons 4.572593e-02   p_joint 4.333333e-04

Joint ci ratio: 3.638868e-01	ci left: 3.390983e-04	ci right 4.929800e-04	k: 115	n:280000
Cons ci ratio: 3.384141e-02	ci left: 4.495420e-02	ci right 4.650522e-02	k: 12803	n:280000
KS ci ratio: 7.407720e-01	ci left: 6.354797e-05	ci right 1.402954e-04	k: 27	n:280000
COL6A6   280000 perm   114 sec   (2451 perm/sec)   p_kst 9.642857e-05   p_cons 4.572500e-02   p_joint 4.107143e-04

Joint ci ratio: 3.623304e-01	ci left: 3.305387e-04	ci right 4.797428e-04	k: 116	n:290000
Cons ci ratio: 3.328214e-02	ci left: 4.489144e-02	ci right 4.641421e-02	k: 13238	n:290000
KS ci ratio: 7.407733e-01	ci left: 6.135663e-05	ci right 1.354578e-04	k: 27	n:290000
COL6A6   290000 perm   119 sec   (2428 perm/sec)   p_kst 9.310345e-05   p_cons 4.564828e-02   p_joint 4.000000e-04

Joint ci ratio: 3.703354e-01	ci left: 3.043872e-04	ci right 4.455586e-04	k: 111	n:300000
Cons ci ratio: 3.276980e-02	ci left: 4.478015e-02	ci right 4.627531e-02	k: 13657	n:300000
KS ci ratio: 7.278893e-01	ci left: 6.202019e-05	ci right 1.348899e-04	k: 28	n:300000
COL6A6   300000 perm   125 sec   (2406 perm/sec)   p_kst 9.333333e-05   p_cons 4.552333e-02   p_joint 3.700000e-04

Joint ci ratio: 3.654735e-01	ci left: 3.033510e-04	ci right 4.417540e-04	k: 114	n:310000
Cons ci ratio: 3.219782e-02	ci left: 4.489708e-02	ci right 4.636950e-02	k: 14145	n:310000
KS ci ratio: 7.156550e-01	ci left: 6.265169e-05	ci right 1.343483e-04	k: 29	n:310000
COL6A6   310000 perm   130 sec   (2383 perm/sec)   p_kst 9.354839e-05   p_cons 4.562903e-02   p_joint 3.677419e-04

Joint ci ratio: 3.654756e-01	ci left: 2.938710e-04	ci right 4.279497e-04	k: 114	n:320000
Cons ci ratio: 3.165818e-02	ci left: 4.499760e-02	ci right 4.644814e-02	k: 14630	n:320000
KS ci ratio: 7.156561e-01	ci left: 6.069380e-05	ci right 1.301500e-04	k: 29	n:320000
COL6A6   320000 perm   136 sec   (2361 perm/sec)   p_kst 9.062500e-05   p_cons 4.571875e-02   p_joint 3.562500e-04

Joint ci ratio: 3.824914e-01	ci left: 2.575087e-04	ci right 3.818461e-04	k: 104	n:330000
Cons ci ratio: 3.116207e-02	ci left: 4.504411e-02	ci right 4.647298e-02	k: 15099	n:330000
KS ci ratio: 6.929300e-01	ci left: 6.382812e-05	ci right 1.333368e-04	k: 31	n:330000
COL6A6   330000 perm   141 sec   (2341 perm/sec)   p_kst 9.393939e-05   p_cons 4.575455e-02   p_joint 3.151515e-04

Joint ci ratio: 3.824932e-01	ci left: 2.499347e-04	ci right 3.706157e-04	k: 104	n:340000
Cons ci ratio: 3.069788e-02	ci left: 4.506176e-02	ci right 4.646952e-02	k: 15559	n:340000
KS ci ratio: 6.823503e-01	ci left: 6.437726e-05	ci right 1.328635e-04	k: 32	n:340000
COL6A6   340000 perm   146 sec   (2321 perm/sec)   p_kst 9.411765e-05   p_cons 4.576176e-02   p_joint 3.058824e-04

Joint ci ratio: 3.979600e-01	ci left: 2.221778e-04	ci right 3.349396e-04	k: 96	n:350000
Cons ci ratio: 3.025582e-02	ci left: 4.507288e-02	ci right 4.646036e-02	k: 16017	n:350000
KS ci ratio: 6.532988e-01	ci left: 6.965462e-05	ci right 1.390731e-04	k: 35	n:350000
COL6A6   350000 perm   152 sec   (2301 perm/sec)   p_kst 1.000000e-04   p_cons 4.576286e-02   p_joint 2.742857e-04

Joint ci ratio: 3.939201e-01	ci left: 2.210085e-04	ci right 3.317418e-04	k: 98	n:360000
Cons ci ratio: 2.984275e-02	ci left: 4.505319e-02	ci right 4.642080e-02	k: 16464	n:360000
KS ci ratio: 6.444100e-01	ci left: 7.003972e-05	ci right 1.384395e-04	k: 36	n:360000
COL6A6   360000 perm   158 sec   (2281 perm/sec)   p_kst 1.000000e-04   p_cons 4.573333e-02   p_joint 2.722222e-04

Joint ci ratio: 3.939216e-01	ci left: 2.150352e-04	ci right 3.227761e-04	k: 98	n:370000
Cons ci ratio: 2.944434e-02	ci left: 4.504005e-02	ci right 4.638870e-02	k: 16913	n:370000
KS ci ratio: 6.444109e-01	ci left: 6.814673e-05	ci right 1.346980e-04	k: 36	n:370000
COL6A6   370000 perm   164 sec   (2261 perm/sec)   p_kst 9.729730e-05   p_cons 4.571081e-02   p_joint 2.648649e-04

Joint ci ratio: 3.959282e-01	ci left: 2.070059e-04	ci right 3.113907e-04	k: 97	n:380000
Cons ci ratio: 2.907374e-02	ci left: 4.499113e-02	ci right 4.632108e-02	k: 17348	n:380000
KS ci ratio: 6.276693e-01	ci left: 7.076689e-05	ci right 1.372553e-04	k: 38	n:380000
COL6A6   380000 perm   170 sec   (2241 perm/sec)   p_kst 1.000000e-04   p_cons 4.565263e-02   p_joint 2.552632e-04

Joint ci ratio: 3.880866e-01	ci left: 2.109437e-04	ci right 3.146686e-04	k: 101	n:390000
Cons ci ratio: 2.872611e-02	ci left: 4.491681e-02	ci right 4.622842e-02	k: 17772	n:390000
KS ci ratio: 6.121682e-01	ci left: 7.327428e-05	ci right 1.396606e-04	k: 40	n:390000
COL6A6   390000 perm   175 sec   (2223 perm/sec)   p_kst 1.025641e-04   p_cons 4.556923e-02   p_joint 2.589744e-04

Joint ci ratio: 3.789095e-01	ci left: 2.169652e-04	ci right 3.205010e-04	k: 106	n:400000
Cons ci ratio: 2.834580e-02	ci left: 4.498286e-02	ci right 4.627873e-02	k: 18251	n:400000
KS ci ratio: 5.909290e-01	ci left: 7.779934e-05	ci right 1.447991e-04	k: 43	n:400000
COL6A6   400000 perm   182 sec   (2202 perm/sec)   p_kst 1.075000e-04   p_cons 4.562750e-02   p_joint 2.650000e-04

Joint ci ratio: 3.771520e-01	ci left: 2.138806e-04	ci right 3.153537e-04	k: 107	n:410000
Cons ci ratio: 2.799195e-02	ci left: 4.500946e-02	ci right 4.628965e-02	k: 18715	n:410000
KS ci ratio: 5.909298e-01	ci left: 7.590177e-05	ci right 1.412675e-04	k: 43	n:410000
COL6A6   410000 perm   188 sec   (2184 perm/sec)   p_kst 1.048780e-04   p_cons 4.564634e-02   p_joint 2.609756e-04

Joint ci ratio: 3.754187e-01	ci left: 2.109439e-04	ci right 3.104506e-04	k: 108	n:420000
Cons ci ratio: 2.763971e-02	ci left: 4.507037e-02	ci right 4.633591e-02	k: 19194	n:420000
KS ci ratio: 5.843271e-01	ci left: 7.612116e-05	ci right 1.406354e-04	k: 44	n:420000
COL6A6   420000 perm   194 sec   (2165 perm/sec)   p_kst 1.047619e-04   p_cons 4.570000e-02   p_joint 2.571429e-04

Joint ci ratio: 3.703565e-01	ci left: 2.123612e-04	ci right 3.108584e-04	k: 111	n:430000
Cons ci ratio: 2.730625e-02	ci left: 4.511006e-02	ci right 4.636119e-02	k: 19665	n:430000
KS ci ratio: 5.843278e-01	ci left: 7.435088e-05	ci right 1.373649e-04	k: 44	n:430000
COL6A6   430000 perm   200 sec   (2148 perm/sec)   p_kst 1.023256e-04   p_cons 4.573256e-02   p_joint 2.581395e-04

Joint ci ratio: 3.670937e-01	ci left: 2.116591e-04	ci right 3.087583e-04	k: 113	n:440000
Cons ci ratio: 2.700567e-02	ci left: 4.508029e-02	ci right 4.631661e-02	k: 20106	n:440000
KS ci ratio: 5.717596e-01	ci left: 7.654140e-05	ci right 1.394466e-04	k: 46	n:440000
COL6A6   440000 perm   207 sec   (2130 perm/sec)   p_kst 1.045455e-04   p_cons 4.569545e-02   p_joint 2.568182e-04

Joint ci ratio: 3.639155e-01	ci left: 2.109918e-04	ci right 3.067479e-04	k: 115	n:450000
Cons ci ratio: 2.669983e-02	ci left: 4.510049e-02	ci right 4.632315e-02	k: 20569	n:450000
KS ci ratio: 5.543403e-01	ci left: 8.055765e-05	ci right 1.439544e-04	k: 49	n:450000
COL6A6   450000 perm   213 sec   (2112 perm/sec)   p_kst 1.088889e-04   p_cons 4.570889e-02   p_joint 2.555556e-04

Joint ci ratio: 3.592989e-01	ci left: 2.123343e-04	ci right 3.071912e-04	k: 118	n:460000
Cons ci ratio: 2.639888e-02	ci left: 4.513717e-02	ci right 4.634682e-02	k: 21040	n:460000
KS ci ratio: 5.488788e-01	ci left: 8.067705e-05	ci right 1.432992e-04	k: 50	n:460000
COL6A6   460000 perm   219 sec   (2097 perm/sec)   p_kst 1.086957e-04   p_cons 4.573913e-02   p_joint 2.565217e-04

Joint ci ratio: 3.577993e-01	ci left: 2.097525e-04	ci right 3.029738e-04	k: 119	n:470000
Cons ci ratio: 2.612380e-02	ci left: 4.511950e-02	ci right 4.631589e-02	k: 21486	n:470000
KS ci ratio: 5.488794e-01	ci left: 7.896050e-05	ci right 1.402503e-04	k: 50	n:470000
COL6A6   470000 perm   226 sec   (2082 perm/sec)   p_kst 1.063830e-04   p_cons 4.571489e-02   p_joint 2.531915e-04

Joint ci ratio: 3.491752e-01	ci left: 2.167730e-04	ci right 3.102670e-04	k: 125	n:480000
Cons ci ratio: 2.588188e-02	ci left: 4.501982e-02	ci right 4.620234e-02	k: 21892	n:480000
KS ci ratio: 5.334139e-01	ci left: 8.271072e-05	ci right 1.444253e-04	k: 53	n:480000
COL6A6   480000 perm   232 sec   (2066 perm/sec)   p_kst 1.104167e-04   p_cons 4.560833e-02   p_joint 2.604167e-04

Joint ci ratio: 3.593018e-01	ci left: 1.993340e-04	ci right 2.883840e-04	k: 118	n:490000
Cons ci ratio: 2.559549e-02	ci left: 4.509666e-02	ci right 4.626790e-02	k: 22383	n:490000
KS ci ratio: 5.334145e-01	ci left: 8.102272e-05	ci right 1.414779e-04	k: 53	n:490000
COL6A6   490000 perm   239 sec   (2051 perm/sec)   p_kst 1.081633e-04   p_cons 4.567959e-02   p_joint 2.408163e-04

Joint ci ratio: 3.563202e-01	ci left: 1.989877e-04	ci right 2.869744e-04	k: 120	n:500000
Cons ci ratio: 2.532710e-02	ci left: 4.514068e-02	ci right 4.630059e-02	k: 22859	n:500000
KS ci ratio: 5.285431e-01	ci left: 8.113393e-05	ci right 1.409143e-04	k: 54	n:500000
COL6A6   500000 perm   246 sec   (2033 perm/sec)   p_kst 1.080000e-04   p_cons 4.571800e-02   p_joint 2.400000e-04

Joint ci ratio: 3.534115e-01	ci left: 1.986580e-04	ci right 2.856172e-04	k: 122	n:510000
Cons ci ratio: 2.507148e-02	ci left: 4.516744e-02	ci right 4.631616e-02	k: 23327	n:510000
KS ci ratio: 5.191872e-01	ci left: 8.294573e-05	ci right 1.425872e-04	k: 56	n:510000
COL6A6   510000 perm   253 sec   (2014 perm/sec)   p_kst 1.098039e-04   p_cons 4.573922e-02   p_joint 2.392157e-04

Joint ci ratio: 3.478009e-01	ci left: 2.018527e-04	ci right 2.884915e-04	k: 126	n:520000
Cons ci ratio: 2.482619e-02	ci left: 4.518367e-02	ci right 4.632140e-02	k: 23790	n:520000
KS ci ratio: 5.191877e-01	ci left: 8.135061e-05	ci right 1.398452e-04	k: 56	n:520000
COL6A6   520000 perm   261 sec   (1994 perm/sec)   p_kst 1.076923e-04   p_cons 4.575000e-02   p_joint 2.423077e-04

Joint ci ratio: 3.411494e-01	ci left: 2.066621e-04	ci right 2.932951e-04	k: 131	n:530000
Cons ci ratio: 2.461029e-02	ci left: 4.512056e-02	ci right 4.624668e-02	k: 24211	n:530000
KS ci ratio: 5.103116e-01	ci left: 8.309881e-05	ci right 1.414665e-04	k: 58	n:530000
COL6A6   530000 perm   268 sec   (1980 perm/sec)   p_kst 1.094340e-04   p_cons 4.568113e-02   p_joint 2.471698e-04

Joint ci ratio: 3.424501e-01	ci left: 2.011421e-04	ci right 2.858536e-04	k: 130	n:540000
Cons ci ratio: 2.435541e-02	ci left: 4.521816e-02	ci right 4.633487e-02	k: 24718	n:540000
KS ci ratio: 5.060412e-01	ci left: 8.317422e-05	ci right 1.409343e-04	k: 59	n:540000
COL6A6   540000 perm   275 sec   (1965 perm/sec)   p_kst 1.092593e-04   p_cons 4.577407e-02   p_joint 2.407407e-04

Joint ci ratio: 3.398657e-01	ci left: 2.008098e-04	ci right 2.846030e-04	k: 132	n:550000
Cons ci ratio: 2.414492e-02	ci left: 4.518031e-02	ci right 4.628630e-02	k: 25152	n:550000
KS ci ratio: 4.978120e-01	ci left: 8.483770e-05	ci right 1.424651e-04	k: 61	n:550000
COL6A6   550000 perm   282 sec   (1951 perm/sec)   p_kst 1.109091e-04   p_cons 4.573091e-02   p_joint 2.400000e-04

Joint ci ratio: 3.373389e-01	ci left: 2.004917e-04	ci right 2.833948e-04	k: 134	n:560000
Cons ci ratio: 2.393294e-02	ci left: 4.516870e-02	ci right 4.626457e-02	k: 25600	n:560000
KS ci ratio: 4.938454e-01	ci left: 8.488503e-05	ci right 1.419285e-04	k: 62	n:560000
COL6A6   560000 perm   289 sec   (1936 perm/sec)   p_kst 1.107143e-04   p_cons 4.571429e-02   p_joint 2.392857e-04

Joint ci ratio: 3.478047e-01	ci left: 1.841460e-04	ci right 2.631858e-04	k: 126	n:570000
Cons ci ratio: 2.371071e-02	ci left: 4.521512e-02	ci right 4.630179e-02	k: 26081	n:570000
KS ci ratio: 4.899721e-01	ci left: 8.493247e-05	ci right 1.414090e-04	k: 63	n:570000
COL6A6   570000 perm   296 sec   (1923 perm/sec)   p_kst 1.105263e-04   p_cons 4.575614e-02   p_joint 2.210526e-04

Joint ci ratio: 3.437679e-01	ci left: 1.856943e-04	ci right 2.642679e-04	k: 129	n:580000
Cons ci ratio: 2.350383e-02	ci left: 4.522568e-02	ci right 4.630300e-02	k: 26542	n:580000
KS ci ratio: 4.861885e-01	ci left: 8.497997e-05	ci right 1.409057e-04	k: 64	n:580000
COL6A6   580000 perm   304 sec   (1910 perm/sec)   p_kst 1.103448e-04   p_cons 4.576207e-02   p_joint 2.224138e-04

Joint ci ratio: 3.385977e-01	ci left: 1.887459e-04	ci right 2.671470e-04	k: 133	n:590000
Cons ci ratio: 2.331404e-02	ci left: 4.519211e-02	ci right 4.625981e-02	k: 26977	n:590000
KS ci ratio: 4.824912e-01	ci left: 8.502748e-05	ci right 1.404179e-04	k: 65	n:590000
COL6A6   590000 perm   311 sec   (1896 perm/sec)   p_kst 1.101695e-04   p_cons 4.572373e-02   p_joint 2.254237e-04

Joint ci ratio: 3.491844e-01	ci left: 1.734177e-04	ci right 2.482148e-04	k: 125	n:600000
Cons ci ratio: 2.311243e-02	ci left: 4.522102e-02	ci right 4.628004e-02	k: 27449	n:600000
KS ci ratio: 4.824917e-01	ci left: 8.361034e-05	ci right 1.380777e-04	k: 65	n:600000
COL6A6   600000 perm   319 sec   (1883 perm/sec)   p_kst 1.083333e-04   p_cons 4.574833e-02   p_joint 2.083333e-04

Joint ci ratio: 3.478073e-01	ci left: 1.720706e-04	ci right 2.459280e-04	k: 126	n:610000
Cons ci ratio: 2.293319e-02	ci left: 4.518380e-02	ci right 4.623364e-02	k: 27881	n:610000
KS ci ratio: 4.824921e-01	ci left: 8.223967e-05	ci right 1.358141e-04	k: 65	n:610000
COL6A6   610000 perm   326 sec   (1870 perm/sec)   p_kst 1.065574e-04   p_cons 4.570656e-02   p_joint 2.065574e-04

Joint ci ratio: 3.424555e-01	ci left: 1.751878e-04	ci right 2.489700e-04	k: 130	n:620000
Cons ci ratio: 2.274836e-02	ci left: 4.518471e-02	ci right 4.622600e-02	k: 28336	n:620000
KS ci ratio: 4.824926e-01	ci left: 8.091321e-05	ci right 1.336236e-04	k: 65	n:620000
COL6A6   620000 perm   334 sec   (1858 perm/sec)   p_kst 1.048387e-04   p_cons 4.570323e-02   p_joint 2.096774e-04

Joint ci ratio: 3.451011e-01	ci left: 1.695064e-04	ci right 2.415706e-04	k: 128	n:630000
Cons ci ratio: 2.257451e-02	ci left: 4.516036e-02	ci right 4.619303e-02	k: 28775	n:630000
KS ci ratio: 4.788784e-01	ci left: 8.102375e-05	ci right 1.332809e-04	k: 66	n:630000
COL6A6   630000 perm   341 sec   (1845 perm/sec)   p_kst 1.047619e-04   p_cons 4.567460e-02   p_joint 2.031746e-04

Joint ci ratio: 3.373440e-01	ci left: 1.754298e-04	ci right 2.479711e-04	k: 134	n:640000
Cons ci ratio: 2.240740e-02	ci left: 4.512592e-02	ci right 4.615007e-02	k: 29207	n:640000
KS ci ratio: 4.718867e-01	ci left: 8.250820e-05	ci right 1.346953e-04	k: 68	n:640000
COL6A6   640000 perm   349 sec   (1832 perm/sec)   p_kst 1.062500e-04   p_cons 4.563594e-02   p_joint 2.093750e-04

Joint ci ratio: 3.312645e-01	ci left: 1.797777e-04	ci right 2.524917e-04	k: 139	n:650000
Cons ci ratio: 2.222667e-02	ci left: 4.515991e-02	ci right 4.617645e-02	k: 29683	n:650000
KS ci ratio: 4.685040e-01	ci left: 8.259494e-05	ci right 1.343426e-04	k: 69	n:650000
COL6A6   650000 perm   357 sec   (1820 perm/sec)   p_kst 1.061538e-04   p_cons 4.566615e-02   p_joint 2.138462e-04

Joint ci ratio: 3.300880e-01	ci left: 1.784431e-04	ci right 2.503066e-04	k: 140	n:660000
Cons ci ratio: 2.206749e-02	ci left: 4.512507e-02	ci right 4.613347e-02	k: 30114	n:660000
KS ci ratio: 4.651930e-01	ci left: 8.268035e-05	ci right 1.339993e-04	k: 70	n:660000
COL6A6   660000 perm   365 sec   (1807 perm/sec)   p_kst 1.060606e-04   p_cons 4.562727e-02   p_joint 2.121212e-04

Joint ci ratio: 3.266313e-01	ci left: 1.798884e-04	ci right 2.514160e-04	k: 143	n:670000
Cons ci ratio: 2.189967e-02	ci left: 4.513881e-02	ci right 4.613975e-02	k: 30577	n:670000
KS ci ratio: 4.556652e-01	ci left: 8.540444e-05	ci right 1.369929e-04	k: 73	n:670000
COL6A6   670000 perm   373 sec   (1795 perm/sec)   p_kst 1.089552e-04   p_cons 4.563731e-02   p_joint 2.134328e-04

Joint ci ratio: 3.289245e-01	ci left: 1.745437e-04	ci right 2.445365e-04	k: 141	n:680000
Cons ci ratio: 2.173672e-02	ci left: 4.514779e-02	ci right 4.614138e-02	k: 31037	n:680000
KS ci ratio: 4.556656e-01	ci left: 8.414848e-05	ci right 1.349783e-04	k: 73	n:680000
COL6A6   680000 perm   381 sec   (1783 perm/sec)   p_kst 1.073529e-04   p_cons 4.564265e-02   p_joint 2.073529e-04

Joint ci ratio: 3.277727e-01	ci left: 1.733439e-04	ci right 2.425609e-04	k: 142	n:690000
Cons ci ratio: 2.158167e-02	ci left: 4.513923e-02	ci right 4.612546e-02	k: 31485	n:690000
KS ci ratio: 4.556660e-01	ci left: 8.292893e-05	ci right 1.330222e-04	k: 73	n:690000
COL6A6   690000 perm   390 sec   (1771 perm/sec)   p_kst 1.057971e-04   p_cons 4.563043e-02   p_joint 2.057971e-04

Joint ci ratio: 3.386038e-01	ci left: 1.590854e-04	ci right 2.251675e-04	k: 133	n:700000
Cons ci ratio: 2.142566e-02	ci left: 4.514799e-02	ci right 4.612720e-02	k: 31945	n:700000
KS ci ratio: 4.496301e-01	ci left: 8.427556e-05	ci right 1.343027e-04	k: 75	n:700000
COL6A6   700000 perm   398 sec   (1759 perm/sec)   p_kst 1.071429e-04   p_cons 4.563571e-02   p_joint 1.900000e-04

Joint ci ratio: 3.386042e-01	ci left: 1.568447e-04	ci right 2.219962e-04	k: 133	n:710000
Cons ci ratio: 2.126887e-02	ci left: 4.517335e-02	ci right 4.614585e-02	k: 32417	n:710000
KS ci ratio: 4.438279e-01	ci left: 8.558852e-05	ci right 1.355429e-04	k: 77	n:710000
COL6A6   710000 perm   406 sec   (1748 perm/sec)   p_kst 1.084507e-04   p_cons 4.565775e-02   p_joint 1.873239e-04

Joint ci ratio: 3.411607e-01	ci left: 1.521255e-04	ci right 2.158991e-04	k: 131	n:720000
Cons ci ratio: 2.113500e-02	ci left: 4.511788e-02	ci right 4.608300e-02	k: 32831	n:720000
KS ci ratio: 4.382447e-01	ci left: 8.686905e-05	ci right 1.367448e-04	k: 79	n:720000
COL6A6   720000 perm   414 sec   (1737 perm/sec)   p_kst 1.097222e-04   p_cons 4.559861e-02   p_joint 1.819444e-04

Joint ci ratio: 3.386051e-01	ci left: 1.525475e-04	ci right 2.159142e-04	k: 133	n:730000
Cons ci ratio: 2.099338e-02	ci left: 4.510621e-02	ci right 4.606453e-02	k: 33276	n:730000
KS ci ratio: 4.355311e-01	ci left: 8.689822e-05	ci right 1.363912e-04	k: 80	n:730000
COL6A6   730000 perm   423 sec   (1726 perm/sec)   p_kst 1.095890e-04   p_cons 4.558356e-02   p_joint 1.821918e-04

Joint ci ratio: 3.398763e-01	ci left: 1.492498e-04	ci right 2.115305e-04	k: 132	n:740000
Cons ci ratio: 2.085294e-02	ci left: 4.510159e-02	ci right 4.605333e-02	k: 33726	n:740000
KS ci ratio: 4.355314e-01	ci left: 8.572391e-05	ci right 1.345481e-04	k: 80	n:740000
COL6A6   740000 perm   431 sec   (1715 perm/sec)   p_kst 1.081081e-04   p_cons 4.557568e-02   p_joint 1.783784e-04

Joint ci ratio: 3.491918e-01	ci left: 1.387337e-04	ci right 1.985726e-04	k: 125	n:750000
Cons ci ratio: 2.071370e-02	ci left: 4.510375e-02	ci right 4.604910e-02	k: 34181	n:750000
KS ci ratio: 4.355317e-01	ci left: 8.458091e-05	ci right 1.327542e-04	k: 80	n:750000
COL6A6   750000 perm   440 sec   (1704 perm/sec)   p_kst 1.066667e-04   p_cons 4.557467e-02   p_joint 1.666667e-04

Joint ci ratio: 3.671139e-01	ci left: 1.225384e-04	ci right 1.787567e-04	k: 113	n:760000
Cons ci ratio: 2.056944e-02	ci left: 4.513860e-02	ci right 4.607802e-02	k: 34661	n:760000
KS ci ratio: 4.251596e-01	ci left: 8.816105e-05	ci right 1.368373e-04	k: 84	n:760000
COL6A6   760000 perm   449 sec   (1694 perm/sec)   p_kst 1.105263e-04   p_cons 4.560658e-02   p_joint 1.486842e-04

Joint ci ratio: 3.655143e-01	ci left: 1.221261e-04	ci right 1.778530e-04	k: 114	n:770000
Cons ci ratio: 2.043668e-02	ci left: 4.513639e-02	ci right 4.606963e-02	k: 35113	n:770000
KS ci ratio: 4.226806e-01	ci left: 8.817622e-05	ci right 1.364967e-04	k: 85	n:770000
COL6A6   770000 perm   457 sec   (1684 perm/sec)   p_kst 1.103896e-04   p_cons 4.560130e-02   p_joint 1.480519e-04

Joint ci ratio: 3.671146e-01	ci left: 1.193963e-04	ci right 1.741733e-04	k: 113	n:780000
Cons ci ratio: 2.029779e-02	ci left: 4.517125e-02	ci right 4.609879e-02	k: 35594	n:780000
KS ci ratio: 4.178496e-01	ci left: 8.933867e-05	ci right 1.375805e-04	k: 87	n:780000
COL6A6   780000 perm   466 sec   (1673 perm/sec)   p_kst 1.115385e-04   p_cons 4.563333e-02   p_joint 1.448718e-04

Joint ci ratio: 3.671149e-01	ci left: 1.178849e-04	ci right 1.719686e-04	k: 113	n:790000
Cons ci ratio: 2.016139e-02	ci left: 4.520651e-02	ci right 4.612847e-02	k: 36076	n:790000
KS ci ratio: 4.131805e-01	ci left: 9.047475e-05	ci right 1.386338e-04	k: 89	n:790000
COL6A6   790000 perm   475 sec   (1663 perm/sec)   p_kst 1.126582e-04   p_cons 4.566582e-02   p_joint 1.430380e-04

Joint ci ratio: 3.639362e-01	ci left: 1.186818e-04	ci right 1.725476e-04	k: 115	n:800000
Cons ci ratio: 2.002427e-02	ci left: 4.525584e-02	ci right 4.617245e-02	k: 36570	n:800000
KS ci ratio: 4.131808e-01	ci left: 8.934381e-05	ci right 1.369009e-04	k: 89	n:800000
COL6A6   800000 perm   484 sec   (1653 perm/sec)   p_kst 1.112500e-04   p_cons 4.571250e-02   p_joint 1.437500e-04

Joint ci ratio: 3.623777e-01	ci left: 1.183385e-04	ci right 1.717642e-04	k: 116	n:810000
Cons ci ratio: 1.990173e-02	ci left: 4.525237e-02	ci right 4.616323e-02	k: 37022	n:810000
KS ci ratio: 4.109043e-01	ci left: 8.934737e-05	ci right 1.365727e-04	k: 90	n:810000
COL6A6   810000 perm   493 sec   (1642 perm/sec)   p_kst 1.111111e-04   p_cons 4.570617e-02   p_joint 1.432099e-04

Joint ci ratio: 3.754427e-01	ci left: 1.080433e-04	ci right 1.590133e-04	k: 108	n:820000
Cons ci ratio: 1.978030e-02	ci left: 4.525385e-02	ci right 4.615912e-02	k: 37478	n:820000
KS ci ratio: 4.064618e-01	ci left: 9.044603e-05	ci right 1.375956e-04	k: 92	n:820000
COL6A6   820000 perm   503 sec   (1632 perm/sec)   p_kst 1.121951e-04   p_cons 4.570488e-02   p_joint 1.317073e-04

Joint ci ratio: 3.807195e-01	ci left: 1.034705e-04	ci right 1.531412e-04	k: 105	n:830000
Cons ci ratio: 1.967657e-02	ci left: 4.518696e-02	ci right 4.608610e-02	k: 37877	n:830000
KS ci ratio: 4.064620e-01	ci left: 8.935631e-05	ci right 1.359379e-04	k: 92	n:830000
COL6A6   830000 perm   512 sec   (1621 perm/sec)   p_kst 1.108434e-04   p_cons 4.563494e-02   p_joint 1.265060e-04

Joint ci ratio: 3.881140e-01	ci left: 9.793694e-05	ci right 1.460983e-04	k: 101	n:840000
Cons ci ratio: 1.956293e-02	ci left: 4.517262e-02	ci right 4.606623e-02	k: 38319	n:840000
KS ci ratio: 4.042943e-01	ci left: 8.936162e-05	ci right 1.356308e-04	k: 93	n:840000
COL6A6   840000 perm   521 sec   (1611 perm/sec)   p_kst 1.107143e-04   p_cons 4.561786e-02   p_joint 1.202381e-04

Joint ci ratio: 3.881143e-01	ci left: 9.678473e-05	ci right 1.443795e-04	k: 101	n:850000
Cons ci ratio: 1.944021e-02	ci left: 4.520782e-02	ci right 4.609645e-02	k: 38803	n:850000
KS ci ratio: 4.042945e-01	ci left: 8.831029e-05	ci right 1.340352e-04	k: 93	n:850000
COL6A6   850000 perm   531 sec   (1601 perm/sec)   p_kst 1.094118e-04   p_cons 4.565059e-02   p_joint 1.188235e-04

Joint ci ratio: 3.862257e-01	ci left: 9.670892e-05	ci right 1.439761e-04	k: 102	n:860000
Cons ci ratio: 1.932132e-02	ci left: 4.523528e-02	ci right 4.611895e-02	k: 39281	n:860000
KS ci ratio: 4.021611e-01	ci left: 8.832828e-05	ci right 1.337567e-04	k: 94	n:860000
COL6A6   860000 perm   540 sec   (1591 perm/sec)   p_kst 1.093023e-04   p_cons 4.567558e-02   p_joint 1.186047e-04

Joint ci ratio: 3.862260e-01	ci left: 9.559731e-05	ci right 1.423213e-04	k: 102	n:870000
Cons ci ratio: 1.921623e-02	ci left: 4.520948e-02	ci right 4.608780e-02	k: 39713	n:870000
KS ci ratio: 4.000610e-01	ci left: 8.834647e-05	ci right 1.334841e-04	k: 95	n:870000
COL6A6   870000 perm   550 sec   (1581 perm/sec)   p_kst 1.091954e-04   p_cons 4.564713e-02   p_joint 1.172414e-04

Joint ci ratio: 3.843647e-01	ci left: 9.553727e-05	ci right 1.419499e-04	k: 103	n:880000
Cons ci ratio: 1.911434e-02	ci left: 4.517750e-02	ci right 4.605049e-02	k: 40139	n:880000
KS ci ratio: 3.979935e-01	ci left: 8.836485e-05	ci right 1.332171e-04	k: 96	n:880000
COL6A6   880000 perm   560 sec   (1572 perm/sec)   p_kst 1.090909e-04   p_cons 4.561250e-02   p_joint 1.170455e-04

Joint ci ratio: 3.825300e-01	ci left: 9.547910e-05	ci right 1.415863e-04	k: 104	n:890000
Cons ci ratio: 1.901699e-02	ci left: 4.513283e-02	ci right 4.600047e-02	k: 40553	n:890000
KS ci ratio: 3.979938e-01	ci left: 8.737198e-05	ci right 1.317203e-04	k: 96	n:890000
COL6A6   890000 perm   570 sec   (1562 perm/sec)   p_kst 1.078652e-04   p_cons 4.556517e-02   p_joint 1.168539e-04

Joint ci ratio: 3.862268e-01	ci left: 9.241070e-05	ci right 1.375773e-04	k: 102	n:900000
Cons ci ratio: 1.891266e-02	ci left: 4.512788e-02	ci right 4.599061e-02	k: 41002	n:900000
KS ci ratio: 3.919780e-01	ci left: 8.940344e-05	ci right 1.339195e-04	k: 99	n:900000
COL6A6   900000 perm   580 sec   (1552 perm/sec)   p_kst 1.100000e-04   p_cons 4.555778e-02   p_joint 1.133333e-04

Joint ci ratio: 3.843654e-01	ci left: 9.238766e-05	ci right 1.372703e-04	k: 103	n:910000
Cons ci ratio: 1.880812e-02	ci left: 4.513180e-02	ci right 4.598978e-02	k: 41459	n:910000
KS ci ratio: 3.919782e-01	ci left: 8.842098e-05	ci right 1.324478e-04	k: 99	n:910000
COL6A6   910000 perm   589 sec   (1544 perm/sec)   p_kst 1.087912e-04   p_cons 4.555934e-02   p_joint 1.131868e-04

Joint ci ratio: 3.843657e-01	ci left: 9.138343e-05	ci right 1.357782e-04	k: 103	n:920000
Cons ci ratio: 1.870974e-02	ci left: 4.511508e-02	ci right 4.596821e-02	k: 41897	n:920000
KS ci ratio: 3.919785e-01	ci left: 8.745987e-05	ci right 1.310082e-04	k: 99	n:920000
COL6A6   920000 perm   599 sec   (1536 perm/sec)   p_kst 1.076087e-04   p_cons 4.554022e-02   p_joint 1.119565e-04

Joint ci ratio: 3.843659e-01	ci left: 9.040081e-05	ci right 1.343183e-04	k: 103	n:930000
Cons ci ratio: 1.860713e-02	ci left: 4.512551e-02	ci right 4.597410e-02	k: 42360	n:930000
KS ci ratio: 3.919787e-01	ci left: 8.651943e-05	ci right 1.295995e-04	k: 99	n:930000
COL6A6   930000 perm   609 sec   (1527 perm/sec)   p_kst 1.064516e-04   p_cons 4.554839e-02   p_joint 1.107527e-04

Joint ci ratio: 3.843662e-01	ci left: 8.943909e-05	ci right 1.328894e-04	k: 103	n:940000
Cons ci ratio: 1.851367e-02	ci left: 4.510076e-02	ci right 4.594459e-02	k: 42790	n:940000
KS ci ratio: 3.919789e-01	ci left: 8.559901e-05	ci right 1.282208e-04	k: 99	n:940000
COL6A6   940000 perm   619 sec   (1518 perm/sec)   p_kst 1.053191e-04   p_cons 4.552128e-02   p_joint 1.095745e-04

Joint ci ratio: 3.843664e-01	ci left: 8.849761e-05	ci right 1.314905e-04	k: 103	n:950000
Cons ci ratio: 1.841558e-02	ci left: 4.510485e-02	ci right 4.594424e-02	k: 43247	n:950000
KS ci ratio: 3.919792e-01	ci left: 8.469796e-05	ci right 1.268711e-04	k: 99	n:950000
COL6A6   950000 perm   630 sec   (1509 perm/sec)   p_kst 1.042105e-04   p_cons 4.552316e-02   p_joint 1.084211e-04

Joint ci ratio: 3.959594e-01	ci left: 8.193872e-05	ci right 1.232609e-04	k: 97	n:960000
Cons ci ratio: 1.832276e-02	ci left: 4.509124e-02	ci right 4.592609e-02	k: 43687	n:960000
KS ci ratio: 3.900339e-01	ci left: 8.475494e-05	ci right 1.266931e-04	k: 100	n:960000
COL6A6   960000 perm   640 sec   (1500 perm/sec)   p_kst 1.041667e-04   p_cons 4.550729e-02   p_joint 1.010417e-04

Joint ci ratio: 4.131849e-01	ci left: 7.368548e-05	ci right 1.129082e-04	k: 89	n:970000
Cons ci ratio: 1.823349e-02	ci left: 4.506765e-02	ci right 4.589796e-02	k: 44117	n:970000
KS ci ratio: 3.862284e-01	ci left: 8.574183e-05	ci right 1.276491e-04	k: 102	n:970000
COL6A6   970000 perm   650 sec   (1492 perm/sec)   p_kst 1.051546e-04   p_cons 4.548144e-02   p_joint 9.175258e-05

Joint ci ratio: 4.131851e-01	ci left: 7.293358e-05	ci right 1.117561e-04	k: 89	n:980000
Cons ci ratio: 1.813231e-02	ci left: 4.510754e-02	ci right 4.593393e-02	k: 44609	n:980000
KS ci ratio: 3.843670e-01	ci left: 8.578848e-05	ci right 1.274654e-04	k: 103	n:980000
COL6A6   980000 perm   661 sec   (1483 perm/sec)   p_kst 1.051020e-04   p_cons 4.551939e-02   p_joint 9.081633e-05

Joint ci ratio: 4.109086e-01	ci left: 7.310226e-05	ci right 1.117415e-04	k: 90	n:990000
Cons ci ratio: 1.803069e-02	ci left: 4.515669e-02	ci right 4.597930e-02	k: 45111	n:990000
KS ci ratio: 3.825323e-01	ci left: 8.583466e-05	ci right 1.272849e-04	k: 104	n:990000
COL6A6   990000 perm   671 sec   (1475 perm/sec)   p_kst 1.050505e-04   p_cons 4.556667e-02   p_joint 9.090909e-05

Joint ci ratio: 4.086692e-01	ci left: 7.326814e-05	ci right 1.117267e-04	k: 91	n:1000000
Cons ci ratio: 1.793921e-02	ci left: 4.516406e-02	ci right 4.598258e-02	k: 45572	n:1000000
KS ci ratio: 3.807237e-01	ci left: 8.588038e-05	ci right 1.271075e-04	k: 105	n:1000000
COL6A6   1000000 perm   682 sec   (1467 perm/sec)   p_kst 1.050000e-04   p_cons 4.557200e-02   p_joint 9.100000e-05

Joint ci ratio: 4.086694e-01	ci left: 7.254270e-05	ci right 1.106205e-04	k: 91	n:1010000
Cons ci ratio: 1.785928e-02	ci left: 4.512199e-02	ci right 4.593607e-02	k: 45983	n:1010000
KS ci ratio: 3.807239e-01	ci left: 8.503007e-05	ci right 1.258490e-04	k: 105	n:1010000
COL6A6   1010000 perm   692 sec   (1459 perm/sec)   p_kst 1.039604e-04   p_cons 4.552772e-02   p_joint 9.009901e-05

Joint ci ratio: 4.202500e-01	ci left: 6.744063e-05	ci right 1.041257e-04	k: 86	n:1020000
Cons ci ratio: 1.777258e-02	ci left: 4.511883e-02	ci right 4.592886e-02	k: 46433	n:1020000
KS ci ratio: 3.807241e-01	ci left: 8.419643e-05	ci right 1.246152e-04	k: 105	n:1020000
COL6A6   1020000 perm   703 sec   (1451 perm/sec)   p_kst 1.029412e-04   p_cons 4.552255e-02   p_joint 8.431373e-05

Joint ci ratio: 4.202502e-01	ci left: 6.678586e-05	ci right 1.031148e-04	k: 86	n:1030000
Cons ci ratio: 1.768258e-02	ci left: 4.513797e-02	ci right 4.594420e-02	k: 46906	n:1030000
KS ci ratio: 3.789408e-01	ci left: 8.425717e-05	ci right 1.244685e-04	k: 106	n:1030000
COL6A6   1030000 perm   714 sec   (1443 perm/sec)   p_kst 1.029126e-04   p_cons 4.553981e-02   p_joint 8.349515e-05

Joint ci ratio: 4.202503e-01	ci left: 6.614369e-05	ci right 1.021233e-04	k: 86	n:1040000
Cons ci ratio: 1.759219e-02	ci left: 4.516538e-02	ci right 4.596793e-02	k: 47388	n:1040000
KS ci ratio: 3.771824e-01	ci left: 8.431717e-05	ci right 1.243242e-04	k: 107	n:1040000
COL6A6   1040000 perm   725 sec   (1435 perm/sec)   p_kst 1.028846e-04   p_cons 4.556538e-02   p_joint 8.269231e-05

Joint ci ratio: 4.328745e-01	ci left: 6.126302e-05	ci right 9.588063e-05	k: 81	n:1050000
Cons ci ratio: 1.751257e-02	ci left: 4.514580e-02	ci right 4.594433e-02	k: 47821	n:1050000
KS ci ratio: 3.754482e-01	ci left: 8.437645e-05	ci right 1.241822e-04	k: 108	n:1050000
COL6A6   1050000 perm   736 sec   (1427 perm/sec)   p_kst 1.028571e-04   p_cons 4.554381e-02   p_joint 7.714286e-05

Joint ci ratio: 4.410178e-01	ci left: 5.816624e-05	ci right 9.183645e-05	k: 78	n:1060000
Cons ci ratio: 1.743420e-02	ci left: 4.512565e-02	ci right 4.592023e-02	k: 48253	n:1060000
KS ci ratio: 3.720503e-01	ci left: 8.529001e-05	ci right 1.250739e-04	k: 110	n:1060000
COL6A6   1060000 perm   747 sec   (1420 perm/sec)   p_kst 1.037736e-04   p_cons 4.552170e-02   p_joint 7.358491e-05

Joint ci ratio: 4.862012e-01	ci left: 4.606366e-05	ci right 7.637934e-05	k: 64	n:1070000
Cons ci ratio: 1.735464e-02	ci left: 4.511707e-02	ci right 4.590783e-02	k: 48697	n:1070000
KS ci ratio: 3.720505e-01	ci left: 8.449290e-05	ci right 1.239050e-04	k: 110	n:1070000
COL6A6   1070000 perm   758 sec   (1412 perm/sec)   p_kst 1.028037e-04   p_cons 4.551121e-02   p_joint 5.981308e-05

Joint ci ratio: 4.862013e-01	ci left: 4.563714e-05	ci right 7.567213e-05	k: 64	n:1080000
Cons ci ratio: 1.727339e-02	ci left: 4.512248e-02	ci right 4.590959e-02	k: 49156	n:1080000
KS ci ratio: 3.720506e-01	ci left: 8.371056e-05	ci right 1.227577e-04	k: 110	n:1080000
COL6A6   1080000 perm   769 sec   (1404 perm/sec)   p_kst 1.018519e-04   p_cons 4.551481e-02   p_joint 5.925926e-05

Joint ci ratio: 4.862014e-01	ci left: 4.521845e-05	ci right 7.497790e-05	k: 64	n:1090000
Cons ci ratio: 1.719800e-02	ci left: 4.510404e-02	ci right 4.588737e-02	k: 49589	n:1090000
KS ci ratio: 3.703860e-01	ci left: 8.377441e-05	ci right 1.226342e-04	k: 111	n:1090000
COL6A6   1090000 perm   780 sec   (1397 perm/sec)   p_kst 1.018349e-04   p_cons 4.549450e-02   p_joint 5.871560e-05

Joint ci ratio: 4.862016e-01	ci left: 4.480737e-05	ci right 7.429628e-05	k: 64	n:1100000
Cons ci ratio: 1.712215e-02	ci left: 4.509319e-02	ci right 4.587284e-02	k: 50030	n:1100000
KS ci ratio: 3.703862e-01	ci left: 8.301282e-05	ci right 1.215193e-04	k: 111	n:1100000
COL6A6   1100000 perm   791 sec   (1390 perm/sec)   p_kst 1.009091e-04   p_cons 4.548182e-02   p_joint 5.818182e-05

Joint ci ratio: 4.862017e-01	ci left: 4.440370e-05	ci right 7.362695e-05	k: 64	n:1110000
Cons ci ratio: 1.704941e-02	ci left: 4.507178e-02	ci right 4.584771e-02	k: 50459	n:1110000
KS ci ratio: 3.687436e-01	ci left: 8.308219e-05	ci right 1.214088e-04	k: 112	n:1110000
COL6A6   1110000 perm   803 sec   (1383 perm/sec)   p_kst 1.009009e-04   p_cons 4.545856e-02   p_joint 5.765766e-05

Joint ci ratio: 4.788897e-01	ci left: 4.557564e-05	ci right 7.497099e-05	k: 66	n:1120000
Cons ci ratio: 1.696992e-02	ci left: 4.508988e-02	ci right 4.586247e-02	k: 50932	n:1120000
KS ci ratio: 3.687438e-01	ci left: 8.234038e-05	ci right 1.203248e-04	k: 112	n:1120000
COL6A6   1120000 perm   815 sec   (1375 perm/sec)   p_kst 1.000000e-04   p_cons 4.547500e-02   p_joint 5.892857e-05

Joint ci ratio: 4.862020e-01	ci left: 4.361779e-05	ci right 7.232383e-05	k: 64	n:1130000
Cons ci ratio: 1.689428e-02	ci left: 4.509357e-02	ci right 4.586275e-02	k: 51389	n:1130000
KS ci ratio: 3.639440e-01	ci left: 8.402221e-05	ci right 1.221581e-04	k: 115	n:1130000
COL6A6   1130000 perm   827 sec   (1367 perm/sec)   p_kst 1.017699e-04   p_cons 4.547699e-02   p_joint 5.663717e-05

Joint ci ratio: 4.788899e-01	ci left: 4.477606e-05	ci right 7.365572e-05	k: 66	n:1140000
Cons ci ratio: 1.682916e-02	ci left: 4.504827e-02	ci right 4.581369e-02	k: 51790	n:1140000
KS ci ratio: 3.623854e-01	ci left: 8.408232e-05	ci right 1.220435e-04	k: 116	n:1140000
COL6A6   1140000 perm   838 sec   (1360 perm/sec)   p_kst 1.017544e-04   p_cons 4.542982e-02   p_joint 5.789474e-05

Joint ci ratio: 4.788901e-01	ci left: 4.438670e-05	ci right 7.301524e-05	k: 66	n:1150000
Cons ci ratio: 1.675992e-02	ci left: 4.502889e-02	ci right 4.579080e-02	k: 52220	n:1150000
KS ci ratio: 3.623855e-01	ci left: 8.335117e-05	ci right 1.209822e-04	k: 116	n:1150000
COL6A6   1150000 perm   850 sec   (1353 perm/sec)   p_kst 1.008696e-04   p_cons 4.540870e-02   p_joint 5.739130e-05

Joint ci ratio: 4.788902e-01	ci left: 4.400405e-05	ci right 7.238580e-05	k: 66	n:1160000
Cons ci ratio: 1.668521e-02	ci left: 4.504247e-02	ci right 4.580118e-02	k: 52688	n:1160000
KS ci ratio: 3.623857e-01	ci left: 8.263262e-05	ci right 1.199393e-04	k: 116	n:1160000
COL6A6   1160000 perm   862 sec   (1346 perm/sec)   p_kst 1.000000e-04   p_cons 4.542069e-02   p_joint 5.689655e-05

Joint ci ratio: 4.753558e-01	ci left: 4.437982e-05	ci right 7.272391e-05	k: 67	n:1170000
Cons ci ratio: 1.661428e-02	ci left: 4.504136e-02	ci right 4.579679e-02	k: 53139	n:1170000
KS ci ratio: 3.608469e-01	ci left: 8.270340e-05	ci right 1.198462e-04	k: 117	n:1170000
COL6A6   1170000 perm   874 sec   (1339 perm/sec)   p_kst 1.000000e-04   p_cons 4.541795e-02   p_joint 5.726496e-05

Joint ci ratio: 4.753559e-01	ci left: 4.400372e-05	ci right 7.210761e-05	k: 67	n:1180000
Cons ci ratio: 1.654231e-02	ci left: 4.505040e-02	ci right 4.580268e-02	k: 53602	n:1180000
KS ci ratio: 3.593275e-01	ci left: 8.277332e-05	ci right 1.197543e-04	k: 118	n:1180000
COL6A6   1180000 perm   886 sec   (1333 perm/sec)   p_kst 1.000000e-04   p_cons 4.542542e-02   p_joint 5.677966e-05

Joint ci ratio: 4.753560e-01	ci left: 4.363394e-05	ci right 7.150167e-05	k: 67	n:1190000
Cons ci ratio: 1.646998e-02	ci left: 4.506599e-02	ci right 4.581521e-02	k: 54073	n:1190000
KS ci ratio: 3.593277e-01	ci left: 8.207774e-05	ci right 1.187480e-04	k: 118	n:1190000
COL6A6   1190000 perm   898 sec   (1326 perm/sec)   p_kst 9.915966e-05   p_cons 4.543950e-02   p_joint 5.630252e-05

Joint ci ratio: 4.753562e-01	ci left: 4.327032e-05	ci right 7.090583e-05	k: 67	n:1200000
Cons ci ratio: 1.639986e-02	ci left: 4.507469e-02	ci right 4.582084e-02	k: 54536	n:1200000
KS ci ratio: 3.593278e-01	ci left: 8.139375e-05	ci right 1.177585e-04	k: 118	n:1200000
COL6A6   1200000 perm   910 sec   (1319 perm/sec)   p_kst 9.833333e-05   p_cons 4.544667e-02   p_joint 5.583333e-05

Joint ci ratio: 4.753563e-01	ci left: 4.291271e-05	ci right 7.031983e-05	k: 67	n:1210000
Cons ci ratio: 1.633701e-02	ci left: 4.504950e-02	ci right 4.579235e-02	k: 54958	n:1210000
KS ci ratio: 3.563457e-01	ci left: 8.222539e-05	ci right 1.185861e-04	k: 120	n:1210000
COL6A6   1210000 perm   922 sec   (1313 perm/sec)   p_kst 9.917355e-05   p_cons 4.541983e-02   p_joint 5.537190e-05

Joint ci ratio: 4.753564e-01	ci left: 4.256097e-05	ci right 6.974344e-05	k: 67	n:1220000
Cons ci ratio: 1.626964e-02	ci left: 4.505249e-02	ci right 4.579229e-02	k: 55414	n:1220000
KS ci ratio: 3.563458e-01	ci left: 8.155141e-05	ci right 1.176141e-04	k: 120	n:1220000
COL6A6   1220000 perm   934 sec   (1306 perm/sec)   p_kst 9.836066e-05   p_cons 4.542131e-02   p_joint 5.491803e-05

Joint ci ratio: 4.753565e-01	ci left: 4.221494e-05	ci right 6.917643e-05	k: 67	n:1230000
Cons ci ratio: 1.620629e-02	ci left: 4.503843e-02	ci right 4.577510e-02	k: 55849	n:1230000
KS ci ratio: 3.548824e-01	ci left: 8.162877e-05	ci right 1.175432e-04	k: 121	n:1230000
COL6A6   1230000 perm   946 sec   (1300 perm/sec)   p_kst 9.837398e-05   p_cons 4.540569e-02   p_joint 5.447154e-05

Joint ci ratio: 4.718992e-01	ci left: 4.258465e-05	ci right 6.952062e-05	k: 68	n:1240000
Cons ci ratio: 1.613722e-02	ci left: 4.505915e-02	ci right 4.579298e-02	k: 56327	n:1240000
KS ci ratio: 3.534368e-01	ci left: 8.170519e-05	ci right 1.174732e-04	k: 122	n:1240000
COL6A6   1240000 perm   959 sec   (1293 perm/sec)   p_kst 9.838710e-05   p_cons 4.542500e-02   p_joint 5.483871e-05

Joint ci ratio: 4.718993e-01	ci left: 4.224397e-05	ci right 6.896446e-05	k: 68	n:1250000
Cons ci ratio: 1.607287e-02	ci left: 4.505882e-02	ci right 4.578969e-02	k: 56779	n:1250000
KS ci ratio: 3.520088e-01	ci left: 8.178067e-05	ci right 1.174040e-04	k: 123	n:1250000
COL6A6   1250000 perm   971 sec   (1287 perm/sec)   p_kst 9.840000e-05   p_cons 4.542320e-02   p_joint 5.440000e-05

Joint ci ratio: 4.685164e-01	ci left: 4.260827e-05	ci right 6.930419e-05	k: 69	n:1260000
Cons ci ratio: 1.600856e-02	ci left: 4.506245e-02	ci right 4.579043e-02	k: 57236	n:1260000
KS ci ratio: 3.492038e-01	ci left: 8.257915e-05	ci right 1.181988e-04	k: 125	n:1260000
COL6A6   1260000 perm   984 sec   (1281 perm/sec)   p_kst 9.920635e-05   p_cons 4.542540e-02   p_joint 5.476190e-05

Joint ci ratio: 4.685165e-01	ci left: 4.227277e-05	ci right 6.875849e-05	k: 69	n:1270000
Cons ci ratio: 1.593951e-02	ci left: 4.509584e-02	ci right 4.582119e-02	k: 57731	n:1270000
KS ci ratio: 3.451191e-01	ci left: 8.408518e-05	ci right 1.198354e-04	k: 128	n:1270000
COL6A6   1270000 perm   997 sec   (1274 perm/sec)   p_kst 1.007874e-04   p_cons 4.545748e-02   p_joint 5.433071e-05

Joint ci ratio: 4.685166e-01	ci left: 4.194251e-05	ci right 6.822132e-05	k: 69	n:1280000
Cons ci ratio: 1.587378e-02	ci left: 4.511549e-02	ci right 4.583813e-02	k: 58209	n:1280000
KS ci ratio: 3.424743e-01	ci left: 8.485588e-05	ci right 1.205961e-04	k: 130	n:1280000
COL6A6   1280000 perm   1009 sec   (1268 perm/sec)   p_kst 1.015625e-04   p_cons 4.547578e-02   p_joint 5.390625e-05

Joint ci ratio: 4.685167e-01	ci left: 4.161738e-05	ci right 6.769248e-05	k: 69	n:1290000
Cons ci ratio: 1.581422e-02	ci left: 4.510549e-02	ci right 4.582524e-02	k: 58649	n:1290000
KS ci ratio: 3.411746e-01	ci left: 8.490674e-05	ci right 1.205027e-04	k: 131	n:1290000
COL6A6   1290000 perm   1022 sec   (1262 perm/sec)   p_kst 1.015504e-04   p_cons 4.546434e-02   p_joint 5.348837e-05

Joint ci ratio: 4.685168e-01	ci left: 4.129724e-05	ci right 6.717177e-05	k: 69	n:1300000
Cons ci ratio: 1.575128e-02	ci left: 4.511787e-02	ci right 4.583493e-02	k: 59118	n:1300000
KS ci ratio: 3.373622e-01	ci left: 8.636473e-05	ci right 1.220793e-04	k: 134	n:1300000
COL6A6   1300000 perm   1035 sec   (1256 perm/sec)   p_kst 1.030769e-04   p_cons 4.547538e-02   p_joint 5.307692e-05

Joint ci ratio: 4.685169e-01	ci left: 4.098199e-05	ci right 6.665901e-05	k: 69	n:1310000
Cons ci ratio: 1.569377e-02	ci left: 4.510421e-02	ci right 4.581841e-02	k: 59553	n:1310000
KS ci ratio: 3.348906e-01	ci left: 8.710334e-05	ci right 1.228025e-04	k: 136	n:1310000
COL6A6   1310000 perm   1048 sec   (1250 perm/sec)   p_kst 1.038168e-04   p_cons 4.546031e-02   p_joint 5.267176e-05

Joint ci ratio: 4.685170e-01	ci left: 4.067152e-05	ci right 6.615402e-05	k: 69	n:1320000
Cons ci ratio: 1.563661e-02	ci left: 4.509227e-02	ci right 4.580366e-02	k: 59990	n:1320000
KS ci ratio: 3.348907e-01	ci left: 8.644346e-05	ci right 1.218722e-04	k: 136	n:1320000
COL6A6   1320000 perm   1061 sec   (1244 perm/sec)   p_kst 1.030303e-04   p_cons 4.544697e-02   p_joint 5.227273e-05

Joint ci ratio: 4.685171e-01	ci left: 4.036572e-05	ci right 6.565663e-05	k: 69	n:1330000
Cons ci ratio: 1.557630e-02	ci left: 4.510150e-02	ci right 4.581026e-02	k: 60455	n:1330000
KS ci ratio: 3.348908e-01	ci left: 8.579350e-05	ci right 1.209558e-04	k: 136	n:1330000
COL6A6   1330000 perm   1074 sec   (1238 perm/sec)   p_kst 1.022556e-04   p_cons 4.545489e-02   p_joint 5.187970e-05

Joint ci ratio: 4.652059e-01	ci left: 4.072293e-05	ci right 6.600013e-05	k: 70	n:1340000
Cons ci ratio: 1.551668e-02	ci left: 4.511058e-02	ci right 4.581675e-02	k: 60920	n:1340000
KS ci ratio: 3.348910e-01	ci left: 8.515325e-05	ci right 1.200532e-04	k: 136	n:1340000
COL6A6   1340000 perm   1087 sec   (1232 perm/sec)   p_kst 1.014925e-04   p_cons 4.546269e-02   p_joint 5.223881e-05

Joint ci ratio: 4.652060e-01	ci left: 4.042128e-05	ci right 6.551125e-05	k: 70	n:1350000
Cons ci ratio: 1.546394e-02	ci left: 4.508486e-02	ci right 4.578821e-02	k: 61338	n:1350000
KS ci ratio: 3.348911e-01	ci left: 8.452248e-05	ci right 1.191639e-04	k: 136	n:1350000
COL6A6   1350000 perm   1101 sec   (1226 perm/sec)   p_kst 1.007407e-04   p_cons 4.543556e-02   p_joint 5.185185e-05

Joint ci ratio: 4.652061e-01	ci left: 4.012406e-05	ci right 6.502955e-05	k: 70	n:1360000
Cons ci ratio: 1.540624e-02	ci left: 4.509028e-02	ci right 4.579107e-02	k: 61798	n:1360000
KS ci ratio: 3.348912e-01	ci left: 8.390099e-05	ci right 1.182877e-04	k: 136	n:1360000
COL6A6   1360000 perm   1114 sec   (1220 perm/sec)   p_kst 1.000000e-04   p_cons 4.543971e-02   p_joint 5.147059e-05

Joint ci ratio: 4.652062e-01	ci left: 3.983118e-05	ci right 6.455489e-05	k: 70	n:1370000
Cons ci ratio: 1.534854e-02	ci left: 4.509927e-02	ci right 4.579755e-02	k: 62263	n:1370000
KS ci ratio: 3.336756e-01	ci left: 8.395724e-05	ci right 1.182153e-04	k: 137	n:1370000
COL6A6   1370000 perm   1128 sec   (1215 perm/sec)   p_kst 1.000000e-04   p_cons 4.544745e-02   p_joint 5.109489e-05

Joint ci ratio: 4.652063e-01	ci left: 3.954255e-05	ci right 6.408710e-05	k: 70	n:1380000
Cons ci ratio: 1.529392e-02	ci left: 4.509441e-02	ci right 4.579011e-02	k: 62709	n:1380000
KS ci ratio: 3.324732e-01	ci left: 8.401290e-05	ci right 1.181437e-04	k: 138	n:1380000
COL6A6   1380000 perm   1141 sec   (1209 perm/sec)   p_kst 1.000000e-04   p_cons 4.544130e-02   p_joint 5.072464e-05

Joint ci ratio: 4.619643e-01	ci left: 3.989344e-05	ci right 6.442895e-05	k: 71	n:1390000
Cons ci ratio: 1.523848e-02	ci left: 4.509751e-02	ci right 4.579071e-02	k: 63166	n:1390000
KS ci ratio: 3.312837e-01	ci left: 8.406797e-05	ci right 1.180729e-04	k: 139	n:1390000
COL6A6   1390000 perm   1155 sec   (1203 perm/sec)   p_kst 1.000000e-04   p_cons 4.544317e-02   p_joint 5.107914e-05

Joint ci ratio: 4.619644e-01	ci left: 3.960848e-05	ci right 6.396875e-05	k: 71	n:1400000
Cons ci ratio: 1.518139e-02	ci left: 4.511339e-02	ci right 4.580421e-02	k: 63641	n:1400000
KS ci ratio: 3.301068e-01	ci left: 8.412247e-05	ci right 1.180029e-04	k: 140	n:1400000
COL6A6   1400000 perm   1169 sec   (1197 perm/sec)   p_kst 1.000000e-04   p_cons 4.545786e-02   p_joint 5.071429e-05

Joint ci ratio: 4.719008e-01	ci left: 3.745030e-05	ci right 6.113876e-05	k: 68	n:1410000
Cons ci ratio: 1.512703e-02	ci left: 4.511703e-02	ci right 4.580541e-02	k: 64099	n:1410000
KS ci ratio: 3.266499e-01	ci left: 8.547815e-05	ci right 1.194684e-04	k: 143	n:1410000
COL6A6   1410000 perm   1183 sec   (1192 perm/sec)   p_kst 1.014184e-04   p_cons 4.546028e-02   p_joint 4.822695e-05

Joint ci ratio: 4.685179e-01	ci left: 3.780732e-05	ci right 6.149532e-05	k: 69	n:1420000
Cons ci ratio: 1.507228e-02	ci left: 4.512623e-02	ci right 4.581224e-02	k: 64565	n:1420000
KS ci ratio: 3.266500e-01	ci left: 8.487619e-05	ci right 1.186271e-04	k: 143	n:1420000
COL6A6   1420000 perm   1197 sec   (1186 perm/sec)   p_kst 1.007042e-04   p_cons 4.546831e-02   p_joint 4.859155e-05

Joint ci ratio: 4.619646e-01	ci left: 3.877753e-05	ci right 6.262675e-05	k: 71	n:1430000
Cons ci ratio: 1.501727e-02	ci left: 4.514019e-02	ci right 4.582389e-02	k: 65038	n:1430000
KS ci ratio: 3.255217e-01	ci left: 8.492471e-05	ci right 1.185538e-04	k: 144	n:1430000
COL6A6   1430000 perm   1211 sec   (1181 perm/sec)   p_kst 1.006993e-04   p_cons 4.548112e-02   p_joint 4.965035e-05

Joint ci ratio: 4.587895e-01	ci left: 3.912212e-05	ci right 6.296632e-05	k: 72	n:1440000
Cons ci ratio: 1.496454e-02	ci left: 4.514427e-02	ci right 4.582561e-02	k: 65497	n:1440000
KS ci ratio: 3.255218e-01	ci left: 8.433495e-05	ci right 1.177306e-04	k: 144	n:1440000
COL6A6   1440000 perm   1225 sec   (1176 perm/sec)   p_kst 1.000000e-04   p_cons 4.548403e-02   p_joint 5.000000e-05

Joint ci ratio: 4.587896e-01	ci left: 3.885231e-05	ci right 6.253207e-05	k: 72	n:1450000
Cons ci ratio: 1.491094e-02	ci left: 4.515655e-02	ci right 4.583561e-02	k: 65968	n:1450000
KS ci ratio: 3.244051e-01	ci left: 8.438673e-05	ci right 1.176643e-04	k: 145	n:1450000
COL6A6   1450000 perm   1239 sec   (1170 perm/sec)   p_kst 1.000000e-04   p_cons 4.549517e-02   p_joint 4.965517e-05

Joint ci ratio: 4.556790e-01	ci left: 3.919222e-05	ci right 6.286709e-05	k: 73	n:1460000
Cons ci ratio: 1.486095e-02	ci left: 4.515092e-02	ci right 4.582760e-02	k: 66413	n:1460000
KS ci ratio: 3.222056e-01	ci left: 8.506745e-05	ci right 1.183391e-04	k: 147	n:1460000
COL6A6   1460000 perm   1253 sec   (1165 perm/sec)   p_kst 1.006849e-04   p_cons 4.548836e-02   p_joint 5.000000e-05

Joint ci ratio: 4.526309e-01	ci left: 3.952803e-05	ci right 6.319702e-05	k: 74	n:1470000
Cons ci ratio: 1.481019e-02	ci left: 4.515282e-02	ci right 4.582720e-02	k: 66869	n:1470000
KS ci ratio: 3.189886e-01	ci left: 8.636538e-05	ci right 1.197385e-04	k: 150	n:1470000
COL6A6   1470000 perm   1267 sec   (1160 perm/sec)   p_kst 1.020408e-04   p_cons 4.548912e-02   p_joint 5.034014e-05

Joint ci ratio: 4.496431e-01	ci left: 3.985984e-05	ci right 6.352199e-05	k: 75	n:1480000
Cons ci ratio: 1.475891e-02	ci left: 4.516077e-02	ci right 4.583291e-02	k: 67334	n:1480000
KS ci ratio: 3.168967e-01	ci left: 8.702537e-05	ci right 1.203883e-04	k: 152	n:1480000
COL6A6   1480000 perm   1281 sec   (1155 perm/sec)   p_kst 1.027027e-04   p_cons 4.549595e-02   p_joint 5.067568e-05

Joint ci ratio: 4.496432e-01	ci left: 3.959232e-05	ci right 6.309567e-05	k: 75	n:1490000
Cons ci ratio: 1.471032e-02	ci left: 4.515590e-02	ci right 4.582574e-02	k: 67780	n:1490000
KS ci ratio: 3.168968e-01	ci left: 8.644130e-05	ci right 1.195803e-04	k: 152	n:1490000
COL6A6   1490000 perm   1295 sec   (1150 perm/sec)   p_kst 1.020134e-04   p_cons 4.548993e-02   p_joint 5.033557e-05

Joint ci ratio: 4.467138e-01	ci left: 3.991977e-05	ci right 6.341648e-05	k: 76	n:1500000
Cons ci ratio: 1.466085e-02	ci left: 4.515907e-02	ci right 4.582668e-02	k: 68238	n:1500000
KS ci ratio: 3.148456e-01	ci left: 8.709267e-05	ci right 1.202218e-04	k: 154	n:1500000
COL6A6   1500000 perm   1310 sec   (1145 perm/sec)   p_kst 1.026667e-04   p_cons 4.549200e-02   p_joint 5.066667e-05

Joint ci ratio: 4.438410e-01	ci left: 4.024338e-05	ci right 6.373257e-05	k: 77	n:1510000
Cons ci ratio: 1.461278e-02	ci left: 4.515693e-02	ci right 4.582230e-02	k: 68688	n:1510000
KS ci ratio: 3.138349e-01	ci left: 8.712591e-05	ci right 1.201399e-04	k: 155	n:1510000
COL6A6   1510000 perm   1324 sec   (1141 perm/sec)   p_kst 1.026490e-04   p_cons 4.548874e-02   p_joint 5.099338e-05

Joint ci ratio: 4.438411e-01	ci left: 3.997862e-05	ci right 6.331328e-05	k: 77	n:1520000
Cons ci ratio: 1.456561e-02	ci left: 4.515219e-02	ci right 4.581533e-02	k: 69134	n:1520000
KS ci ratio: 3.128338e-01	ci left: 8.715888e-05	ci right 1.200590e-04	k: 156	n:1520000
COL6A6   1520000 perm   1339 sec   (1136 perm/sec)   p_kst 1.026316e-04   p_cons 4.548289e-02   p_joint 5.065789e-05

Joint ci ratio: 4.410229e-01	ci left: 4.029809e-05	ci right 6.362543e-05	k: 78	n:1530000
Cons ci ratio: 1.451660e-02	ci left: 4.516120e-02	ci right 4.582222e-02	k: 69601	n:1530000
KS ci ratio: 3.128339e-01	ci left: 8.658921e-05	ci right 1.192743e-04	k: 156	n:1530000
COL6A6   1530000 perm   1353 sec   (1131 perm/sec)   p_kst 1.019608e-04   p_cons 4.549085e-02   p_joint 5.098039e-05

Joint ci ratio: 4.382578e-01	ci left: 4.061387e-05	ci right 6.393308e-05	k: 79	n:1540000
Cons ci ratio: 1.447014e-02	ci left: 4.515780e-02	ci right 4.581664e-02	k: 70049	n:1540000
KS ci ratio: 3.108601e-01	ci left: 8.722403e-05	ci right 1.198998e-04	k: 158	n:1540000
COL6A6   1540000 perm   1367 sec   (1126 perm/sec)   p_kst 1.025974e-04   p_cons 4.548636e-02   p_joint 5.129870e-05

Joint ci ratio: 4.355440e-01	ci left: 4.092603e-05	ci right 6.423632e-05	k: 80	n:1550000
Cons ci ratio: 1.442187e-02	ci left: 4.516795e-02	ci right 4.582472e-02	k: 70518	n:1550000
KS ci ratio: 3.108602e-01	ci left: 8.666129e-05	ci right 1.191263e-04	k: 158	n:1550000
COL6A6   1550000 perm   1382 sec   (1121 perm/sec)   p_kst 1.019355e-04   p_cons 4.549548e-02   p_joint 5.161290e-05

Joint ci ratio: 4.355441e-01	ci left: 4.066368e-05	ci right 6.382455e-05	k: 80	n:1560000
Cons ci ratio: 1.437759e-02	ci left: 4.515689e-02	ci right 4.581147e-02	k: 70954	n:1560000
KS ci ratio: 3.098872e-01	ci left: 8.669687e-05	ci right 1.190534e-04	k: 159	n:1560000
COL6A6   1560000 perm   1397 sec   (1117 perm/sec)   p_kst 1.019231e-04   p_cons 4.548333e-02   p_joint 5.128205e-05

Joint ci ratio: 4.328801e-01	ci left: 4.097198e-05	ci right 6.412419e-05	k: 81	n:1570000
Cons ci ratio: 1.433213e-02	ci left: 4.515550e-02	ci right 4.580797e-02	k: 71405	n:1570000
KS ci ratio: 3.089233e-01	ci left: 8.673216e-05	ci right 1.189814e-04	k: 160	n:1570000
COL6A6   1570000 perm   1412 sec   (1112 perm/sec)   p_kst 1.019108e-04   p_cons 4.548089e-02   p_joint 5.159236e-05

Joint ci ratio: 4.302645e-01	ci left: 4.127681e-05	ci right 6.441961e-05	k: 82	n:1580000
Cons ci ratio: 1.428700e-02	ci left: 4.515475e-02	ci right 4.580514e-02	k: 71857	n:1580000
KS ci ratio: 3.079684e-01	ci left: 8.676715e-05	ci right 1.189101e-04	k: 161	n:1580000
COL6A6   1580000 perm   1427 sec   (1107 perm/sec)   p_kst 1.018987e-04   p_cons 4.547911e-02   p_joint 5.189873e-05

Joint ci ratio: 4.276956e-01	ci left: 4.157822e-05	ci right 6.471091e-05	k: 83	n:1590000
Cons ci ratio: 1.424394e-02	ci left: 4.514400e-02	ci right 4.579225e-02	k: 72293	n:1590000
KS ci ratio: 3.070223e-01	ci left: 8.680186e-05	ci right 1.188395e-04	k: 162	n:1590000
COL6A6   1590000 perm   1442 sec   (1103 perm/sec)   p_kst 1.018868e-04   p_cons 4.546730e-02   p_joint 5.220126e-05

Joint ci ratio: 4.276957e-01	ci left: 4.131835e-05	ci right 6.430647e-05	k: 83	n:1600000
Cons ci ratio: 1.419738e-02	ci left: 4.515704e-02	ci right 4.580335e-02	k: 72767	n:1600000
KS ci ratio: 3.051558e-01	ci left: 8.741336e-05	ci right 1.194425e-04	k: 164	n:1600000
COL6A6   1600000 perm   1457 sec   (1098 perm/sec)   p_kst 1.025000e-04   p_cons 4.547938e-02   p_joint 5.187500e-05

Joint ci ratio: 4.251723e-01	ci left: 4.161616e-05	ci right 6.459445e-05	k: 84	n:1610000
Cons ci ratio: 1.414915e-02	ci left: 4.518293e-02	ci right 4.582740e-02	k: 73262	n:1610000
KS ci ratio: 3.042352e-01	ci left: 8.744406e-05	ci right 1.193690e-04	k: 165	n:1610000
COL6A6   1610000 perm   1472 sec   (1094 perm/sec)   p_kst 1.024845e-04   p_cons 4.550435e-02   p_joint 5.217391e-05

Joint ci ratio: 4.438418e-01	ci left: 3.751079e-05	ci right 5.940507e-05	k: 77	n:1620000
Cons ci ratio: 1.410943e-02	ci left: 4.515929e-02	ci right 4.580159e-02	k: 73677	n:1620000
KS ci ratio: 3.042353e-01	ci left: 8.690428e-05	ci right 1.186322e-04	k: 165	n:1620000
COL6A6   1620000 perm   1487 sec   (1089 perm/sec)   p_kst 1.018519e-04   p_cons 4.547963e-02   p_joint 4.753086e-05

Joint ci ratio: 4.410236e-01	ci left: 3.782580e-05	ci right 5.972206e-05	k: 78	n:1630000
Cons ci ratio: 1.406606e-02	ci left: 4.516040e-02	ci right 4.580073e-02	k: 74132	n:1630000
KS ci ratio: 3.033231e-01	ci left: 8.693786e-05	ci right 1.185645e-04	k: 166	n:1630000
COL6A6   1630000 perm   1502 sec   (1085 perm/sec)   p_kst 1.018405e-04   p_cons 4.547975e-02   p_joint 4.785276e-05

Joint ci ratio: 4.355447e-01	ci left: 3.868008e-05	ci right 6.071118e-05	k: 80	n:1640000
Cons ci ratio: 1.402349e-02	ci left: 4.515906e-02	ci right 4.579742e-02	k: 74583	n:1640000
KS ci ratio: 3.024190e-01	ci left: 8.697118e-05	ci right 1.184975e-04	k: 167	n:1640000
COL6A6   1640000 perm   1518 sec   (1081 perm/sec)   p_kst 1.018293e-04   p_cons 4.547744e-02   p_joint 4.878049e-05

Joint ci ratio: 4.438420e-01	ci left: 3.682877e-05	ci right 5.832499e-05	k: 77	n:1650000
Cons ci ratio: 1.398042e-02	ci left: 4.516319e-02	ci right 4.579962e-02	k: 75043	n:1650000
KS ci ratio: 3.006347e-01	ci left: 8.756452e-05	ci right 1.190829e-04	k: 169	n:1650000
COL6A6   1650000 perm   1533 sec   (1076 perm/sec)   p_kst 1.024242e-04   p_cons 4.548061e-02   p_joint 4.666667e-05

Joint ci ratio: 4.410238e-01	ci left: 3.714220e-05	ci right 5.864275e-05	k: 78	n:1660000
Cons ci ratio: 1.393716e-02	ci left: 4.517086e-02	ci right 4.580542e-02	k: 75509	n:1660000
KS ci ratio: 2.997544e-01	ci left: 8.759407e-05	ci right 1.190132e-04	k: 170	n:1660000
COL6A6   1660000 perm   1549 sec   (1072 perm/sec)   p_kst 1.024096e-04   p_cons 4.548735e-02   p_joint 4.698795e-05

Joint ci ratio: 4.496445e-01	ci left: 3.532486e-05	ci right 5.629498e-05	k: 75	n:1670000
Cons ci ratio: 1.389536e-02	ci left: 4.517189e-02	ci right 4.580454e-02	k: 75964	n:1670000
KS ci ratio: 2.988817e-01	ci left: 8.762340e-05	ci right 1.189441e-04	k: 171	n:1670000
COL6A6   1670000 perm   1564 sec   (1067 perm/sec)   p_kst 1.023952e-04   p_cons 4.548743e-02   p_joint 4.491018e-05

Joint ci ratio: 4.496445e-01	ci left: 3.511460e-05	ci right 5.595989e-05	k: 75	n:1680000
Cons ci ratio: 1.385175e-02	ci left: 4.518654e-02	ci right 4.581740e-02	k: 76442	n:1680000
KS ci ratio: 2.971590e-01	ci left: 8.820331e-05	ci right 1.195153e-04	k: 173	n:1680000
COL6A6   1680000 perm   1580 sec   (1063 perm/sec)   p_kst 1.029762e-04   p_cons 4.550119e-02   p_joint 4.464286e-05

Joint ci ratio: 4.587913e-01	ci left: 3.333480e-05	ci right 5.365182e-05	k: 72	n:1690000
Cons ci ratio: 1.381259e-02	ci left: 4.517567e-02	ci right 4.580458e-02	k: 76877	n:1690000
KS ci ratio: 2.971590e-01	ci left: 8.768140e-05	ci right 1.188082e-04	k: 173	n:1690000
COL6A6   1690000 perm   1596 sec   (1059 perm/sec)   p_kst 1.023669e-04   p_cons 4.548935e-02   p_joint 4.260355e-05

Joint ci ratio: 4.556807e-01	ci left: 3.365917e-05	ci right 5.399178e-05	k: 73	n:1700000
Cons ci ratio: 1.376957e-02	ci left: 4.519132e-02	ci right 4.581847e-02	k: 77357	n:1700000
KS ci ratio: 2.971591e-01	ci left: 8.716562e-05	ci right 1.181093e-04	k: 173	n:1700000
COL6A6   1700000 perm   1612 sec   (1055 perm/sec)   p_kst 1.017647e-04   p_cons 4.550412e-02   p_joint 4.294118e-05

Joint ci ratio: 4.556808e-01	ci left: 3.346234e-05	ci right 5.367604e-05	k: 73	n:1710000
Cons ci ratio: 1.372546e-02	ci left: 4.521610e-02	ci right 4.584158e-02	k: 77853	n:1710000
KS ci ratio: 2.971592e-01	ci left: 8.665588e-05	ci right 1.174186e-04	k: 173	n:1710000
COL6A6   1710000 perm   1627 sec   (1051 perm/sec)   p_kst 1.011696e-04   p_cons 4.552807e-02   p_joint 4.269006e-05

Joint ci ratio: 4.496448e-01	ci left: 3.429797e-05	ci right 5.465851e-05	k: 75	n:1720000
Cons ci ratio: 1.368635e-02	ci left: 4.521163e-02	ci right 4.583525e-02	k: 78299	n:1720000
KS ci ratio: 2.954659e-01	ci left: 8.722843e-05	ci right 1.179849e-04	k: 175	n:1720000
COL6A6   1720000 perm   1643 sec   (1047 perm/sec)   p_kst 1.017442e-04   p_cons 4.552267e-02   p_joint 4.360465e-05

Joint ci ratio: 4.556809e-01	ci left: 3.307549e-05	ci right 5.305552e-05	k: 73	n:1730000
Cons ci ratio: 1.364939e-02	ci left: 4.519569e-02	ci right 4.581739e-02	k: 78725	n:1730000
KS ci ratio: 2.954660e-01	ci left: 8.672422e-05	ci right 1.173029e-04	k: 175	n:1730000
COL6A6   1730000 perm   1659 sec   (1043 perm/sec)   p_kst 1.011561e-04   p_cons 4.550578e-02   p_joint 4.219653e-05

Joint ci ratio: 4.556809e-01	ci left: 3.288540e-05	ci right 5.275060e-05	k: 73	n:1740000
Cons ci ratio: 1.360985e-02	ci left: 4.519827e-02	ci right 4.581819e-02	k: 79183	n:1740000
KS ci ratio: 2.946302e-01	ci left: 8.675799e-05	ci right 1.172459e-04	k: 176	n:1740000
COL6A6   1740000 perm   1675 sec   (1039 perm/sec)   p_kst 1.011494e-04   p_cons 4.550747e-02   p_joint 4.195402e-05

Joint ci ratio: 4.526328e-01	ci left: 3.320352e-05	ci right 5.308556e-05	k: 74	n:1750000
Cons ci ratio: 1.357288e-02	ci left: 4.518658e-02	ci right 4.580464e-02	k: 79616	n:1750000
KS ci ratio: 2.938014e-01	ci left: 8.679149e-05	ci right 1.171894e-04	k: 177	n:1750000
COL6A6   1750000 perm   1691 sec   (1035 perm/sec)   p_kst 1.011429e-04   p_cons 4.549486e-02   p_joint 4.228571e-05

Joint ci ratio: 4.526328e-01	ci left: 3.301486e-05	ci right 5.278393e-05	k: 74	n:1760000
Cons ci ratio: 1.353550e-02	ci left: 4.517956e-02	ci right 4.579581e-02	k: 80057	n:1760000
KS ci ratio: 2.929796e-01	ci left: 8.682472e-05	ci right 1.171334e-04	k: 178	n:1760000
COL6A6   1760000 perm   1707 sec   (1031 perm/sec)   p_kst 1.011364e-04   p_cons 4.548693e-02   p_joint 4.204545e-05

Joint ci ratio: 4.526329e-01	ci left: 3.282834e-05	ci right 5.248572e-05	k: 74	n:1770000
Cons ci ratio: 1.349861e-02	ci left: 4.517149e-02	ci right 4.578593e-02	k: 80496	n:1770000
KS ci ratio: 2.929797e-01	ci left: 8.633418e-05	ci right 1.164717e-04	k: 178	n:1770000
COL6A6   1770000 perm   1724 sec   (1027 perm/sec)   p_kst 1.005650e-04   p_cons 4.547797e-02   p_joint 4.180791e-05

Joint ci ratio: 4.496451e-01	ci left: 3.314186e-05	ci right 5.281609e-05	k: 75	n:1780000
Cons ci ratio: 1.345931e-02	ci left: 4.518087e-02	ci right 4.579364e-02	k: 80966	n:1780000
KS ci ratio: 2.905548e-01	ci left: 8.741123e-05	ci right 1.176257e-04	k: 181	n:1780000
COL6A6   1780000 perm   1740 sec   (1023 perm/sec)   p_kst 1.016854e-04   p_cons 4.548652e-02   p_joint 4.213483e-05

Joint ci ratio: 4.496452e-01	ci left: 3.295671e-05	ci right 5.252103e-05	k: 75	n:1790000
Cons ci ratio: 1.341768e-02	ci left: 4.520742e-02	ci right 4.581864e-02	k: 81467	n:1790000
KS ci ratio: 2.897598e-01	ci left: 8.744091e-05	ci right 1.175678e-04	k: 182	n:1790000
COL6A6   1790000 perm   1757 sec   (1019 perm/sec)   p_kst 1.016760e-04   p_cons 4.551229e-02   p_joint 4.189944e-05

Joint ci ratio: 4.496452e-01	ci left: 3.277361e-05	ci right 5.222925e-05	k: 75	n:1800000
Cons ci ratio: 1.338259e-02	ci left: 4.519380e-02	ci right 4.580322e-02	k: 81896	n:1800000
KS ci ratio: 2.897599e-01	ci left: 8.695512e-05	ci right 1.169146e-04	k: 182	n:1800000
COL6A6   1800000 perm   1772 sec   (1016 perm/sec)   p_kst 1.011111e-04   p_cons 4.549778e-02   p_joint 4.166667e-05

Joint ci ratio: 4.496453e-01	ci left: 3.259254e-05	ci right 5.194069e-05	k: 75	n:1810000
Cons ci ratio: 1.334354e-02	ci left: 4.520787e-02	ci right 4.581569e-02	k: 82375	n:1810000
KS ci ratio: 2.897600e-01	ci left: 8.647470e-05	ci right 1.162687e-04	k: 182	n:1810000
COL6A6   1810000 perm   1789 sec   (1012 perm/sec)   p_kst 1.005525e-04   p_cons 4.551105e-02   p_joint 4.143646e-05

Joint ci ratio: 4.496453e-01	ci left: 3.241346e-05	ci right 5.165531e-05	k: 75	n:1820000
Cons ci ratio: 1.330827e-02	ci left: 4.519933e-02	ci right 4.580542e-02	k: 82813	n:1820000
KS ci ratio: 2.897601e-01	ci left: 8.599956e-05	ci right 1.156299e-04	k: 182	n:1820000
COL6A6   1820000 perm   1806 sec   (1008 perm/sec)   p_kst 1.000000e-04   p_cons 4.550165e-02   p_joint 4.120879e-05

Joint ci ratio: 4.467159e-01	ci left: 3.272109e-05	ci right 5.198078e-05	k: 76	n:1830000
Cons ci ratio: 1.327453e-02	ci left: 4.518271e-02	ci right 4.578703e-02	k: 83236	n:1830000
KS ci ratio: 2.889716e-01	ci left: 8.603641e-05	ci right 1.155840e-04	k: 183	n:1830000
COL6A6   1830000 perm   1823 sec   (1004 perm/sec)   p_kst 1.000000e-04   p_cons 4.548415e-02   p_joint 4.153005e-05

Joint ci ratio: 4.467160e-01	ci left: 3.254326e-05	ci right 5.169828e-05	k: 76	n:1840000
Cons ci ratio: 1.323757e-02	ci left: 4.518903e-02	ci right 4.579174e-02	k: 83701	n:1840000
KS ci ratio: 2.881896e-01	ci left: 8.607297e-05	ci right 1.155385e-04	k: 184	n:1840000
COL6A6   1840000 perm   1839 sec   (1000 perm/sec)   p_kst 1.000000e-04   p_cons 4.548967e-02   p_joint 4.130435e-05

Joint ci ratio: 4.467160e-01	ci left: 3.236735e-05	ci right 5.141883e-05	k: 76	n:1850000
Cons ci ratio: 1.320198e-02	ci left: 4.518829e-02	ci right 4.578935e-02	k: 84153	n:1850000
KS ci ratio: 2.881896e-01	ci left: 8.560771e-05	ci right 1.149140e-04	k: 184	n:1850000
COL6A6   1850000 perm   1856 sec   (997 perm/sec)   p_kst 9.945946e-05   p_cons 4.548811e-02   p_joint 4.108108e-05

Joint ci ratio: 4.438432e-01	ci left: 3.267067e-05	ci right 5.173994e-05	k: 77	n:1860000
Cons ci ratio: 1.316570e-02	ci left: 4.519398e-02	ci right 4.579346e-02	k: 84617	n:1860000
KS ci ratio: 2.874139e-01	ci left: 8.564628e-05	ci right 1.148725e-04	k: 185	n:1860000
COL6A6   1860000 perm   1873 sec   (993 perm/sec)   p_kst 9.946237e-05   p_cons 4.549301e-02   p_joint 4.139785e-05

Joint ci ratio: 4.438432e-01	ci left: 3.249596e-05	ci right 5.146326e-05	k: 77	n:1870000
Cons ci ratio: 1.313150e-02	ci left: 4.518789e-02	ci right 4.578571e-02	k: 85059	n:1870000
KS ci ratio: 2.874140e-01	ci left: 8.518827e-05	ci right 1.142582e-04	k: 185	n:1870000
COL6A6   1870000 perm   1890 sec   (989 perm/sec)   p_kst 9.893048e-05   p_cons 4.548610e-02   p_joint 4.117647e-05

Joint ci ratio: 4.438433e-01	ci left: 3.232311e-05	ci right 5.118952e-05	k: 77	n:1880000
Cons ci ratio: 1.309820e-02	ci left: 4.517762e-02	ci right 4.577378e-02	k: 85493	n:1880000
KS ci ratio: 2.858810e-01	ci left: 8.572251e-05	ci right 1.147906e-04	k: 187	n:1880000
COL6A6   1880000 perm   1907 sec   (986 perm/sec)   p_kst 9.946809e-05   p_cons 4.547500e-02   p_joint 4.095745e-05

Joint ci ratio: 4.438433e-01	ci left: 3.215209e-05	ci right 5.091868e-05	k: 77	n:1890000
Cons ci ratio: 1.306245e-02	ci left: 4.518539e-02	ci right 4.578002e-02	k: 85961	n:1890000
KS ci ratio: 2.851237e-01	ci left: 8.576017e-05	ci right 1.147501e-04	k: 188	n:1890000
COL6A6   1890000 perm   1924 sec   (983 perm/sec)   p_kst 9.947090e-05   p_cons 4.548201e-02   p_joint 4.074074e-05

Joint ci ratio: 4.438434e-01	ci left: 3.198286e-05	ci right 5.065068e-05	k: 77	n:1900000
Cons ci ratio: 1.302423e-02	ci left: 4.521145e-02	ci right 4.580467e-02	k: 86464	n:1900000
KS ci ratio: 2.851238e-01	ci left: 8.530879e-05	ci right 1.141462e-04	k: 188	n:1900000
COL6A6   1900000 perm   1941 sec   (979 perm/sec)   p_kst 9.894737e-05   p_cons 4.550737e-02   p_joint 4.052632e-05

Joint ci ratio: 4.382600e-01	ci left: 3.274623e-05	ci right 5.154820e-05	k: 79	n:1910000
Cons ci ratio: 1.298759e-02	ci left: 4.522889e-02	ci right 4.582066e-02	k: 86951	n:1910000
KS ci ratio: 2.843725e-01	ci left: 8.534833e-05	ci right 1.141094e-04	k: 189	n:1910000
COL6A6   1910000 perm   1958 sec   (976 perm/sec)   p_kst 9.895288e-05   p_cons 4.552408e-02   p_joint 4.136126e-05

Joint ci ratio: 4.382601e-01	ci left: 3.257567e-05	ci right 5.127973e-05	k: 79	n:1920000
Cons ci ratio: 1.295203e-02	ci left: 4.524096e-02	ci right 4.583125e-02	k: 87428	n:1920000
KS ci ratio: 2.843725e-01	ci left: 8.490380e-05	ci right 1.135151e-04	k: 189	n:1920000
COL6A6   1920000 perm   1975 sec   (972 perm/sec)   p_kst 9.843750e-05   p_cons 4.553542e-02   p_joint 4.114583e-05

Joint ci ratio: 4.328823e-01	ci left: 3.332951e-05	ci right 5.216326e-05	k: 81	n:1930000
Cons ci ratio: 1.291900e-02	ci left: 4.523792e-02	ci right 4.582666e-02	k: 87876	n:1930000
KS ci ratio: 2.836271e-01	ci left: 8.494512e-05	ci right 1.134818e-04	k: 190	n:1930000
COL6A6   1930000 perm   1993 sec   (968 perm/sec)   p_kst 9.844560e-05   p_cons 4.553161e-02   p_joint 4.196891e-05

Joint ci ratio: 4.328823e-01	ci left: 3.315771e-05	ci right 5.189438e-05	k: 81	n:1940000
Cons ci ratio: 1.288699e-02	ci left: 4.522978e-02	ci right 4.581694e-02	k: 88314	n:1940000
KS ci ratio: 2.836272e-01	ci left: 8.450726e-05	ci right 1.128969e-04	k: 190	n:1940000
COL6A6   1940000 perm   2010 sec   (965 perm/sec)   p_kst 9.793814e-05   p_cons 4.552268e-02   p_joint 4.175258e-05

Joint ci ratio: 4.328824e-01	ci left: 3.298767e-05	ci right 5.162825e-05	k: 81	n:1950000
Cons ci ratio: 1.285635e-02	ci left: 4.521405e-02	ci right 4.579960e-02	k: 88737	n:1950000
KS ci ratio: 2.828876e-01	ci left: 8.455028e-05	ci right 1.128671e-04	k: 191	n:1950000
COL6A6   1950000 perm   2028 sec   (961 perm/sec)   p_kst 9.794872e-05   p_cons 4.550615e-02   p_joint 4.153846e-05

Joint ci ratio: 4.302667e-01	ci left: 3.327413e-05	ci right 5.193016e-05	k: 82	n:1960000
Cons ci ratio: 1.282321e-02	ci left: 4.521680e-02	ci right 4.580087e-02	k: 89196	n:1960000
KS ci ratio: 2.821538e-01	ci left: 8.459296e-05	ci right 1.128375e-04	k: 192	n:1960000
COL6A6   1960000 perm   2046 sec   (958 perm/sec)   p_kst 9.795918e-05   p_cons 4.550816e-02   p_joint 4.183673e-05

Joint ci ratio: 4.302667e-01	ci left: 3.310523e-05	ci right 5.166655e-05	k: 82	n:1970000
Cons ci ratio: 1.279295e-02	ci left: 4.520181e-02	ci right 4.578430e-02	k: 89620	n:1970000
KS ci ratio: 2.814257e-01	ci left: 8.463530e-05	ci right 1.128081e-04	k: 193	n:1970000
COL6A6   1970000 perm   2063 sec   (955 perm/sec)   p_kst 9.796954e-05   p_cons 4.549239e-02   p_joint 4.162437e-05

Joint ci ratio: 4.276979e-01	ci left: 3.338854e-05	ci right 5.196488e-05	k: 83	n:1980000
Cons ci ratio: 1.276045e-02	ci left: 4.520359e-02	ci right 4.578461e-02	k: 90077	n:1980000
KS ci ratio: 2.807031e-01	ci left: 8.467731e-05	ci right 1.127789e-04	k: 194	n:1980000
COL6A6   1980000 perm   2081 sec   (951 perm/sec)   p_kst 9.797980e-05   p_cons 4.549343e-02   p_joint 4.191919e-05

Joint ci ratio: 4.276979e-01	ci left: 3.322075e-05	ci right 5.170376e-05	k: 83	n:1990000
Cons ci ratio: 1.273107e-02	ci left: 4.518582e-02	ci right 4.576526e-02	k: 90495	n:1990000
KS ci ratio: 2.807032e-01	ci left: 8.425179e-05	ci right 1.122122e-04	k: 194	n:1990000
COL6A6   1990000 perm   2100 sec   (948 perm/sec)   p_kst 9.748744e-05   p_cons 4.547487e-02   p_joint 4.170854e-05

Joint ci ratio: 4.251746e-01	ci left: 3.350098e-05	ci right 5.199860e-05	k: 84	n:2000000
Cons ci ratio: 1.269728e-02	ci left: 4.519962e-02	ci right 4.577769e-02	k: 90976	n:2000000
KS ci ratio: 2.792746e-01	ci left: 8.476033e-05	ci right 1.127212e-04	k: 196	n:2000000
COL6A6   2000000 perm   2118 sec   (944 perm/sec)   p_kst 9.800000e-05   p_cons 4.548800e-02   p_joint 4.200000e-05

Joint ci ratio: 4.226953e-01	ci left: 3.377873e-05	ci right 5.229019e-05	k: 85	n:2010000
Cons ci ratio: 1.266783e-02	ci left: 4.518552e-02	ci right 4.576206e-02	k: 91401	n:2010000
KS ci ratio: 2.785685e-01	ci left: 8.480136e-05	ci right 1.126926e-04	k: 197	n:2010000
COL6A6   2010000 perm   2136 sec   (941 perm/sec)   p_kst 9.800995e-05   p_cons 4.547313e-02   p_joint 4.228856e-05

Joint ci ratio: 4.202590e-01	ci left: 3.405405e-05	ci right 5.257860e-05	k: 86	n:2020000
Cons ci ratio: 1.263641e-02	ci left: 4.518637e-02	ci right 4.576147e-02	k: 91856	n:2020000
KS ci ratio: 2.785685e-01	ci left: 8.438154e-05	ci right 1.121347e-04	k: 197	n:2020000
COL6A6   2020000 perm   2154 sec   (938 perm/sec)   p_kst 9.752475e-05   p_cons 4.547327e-02   p_joint 4.257426e-05

Joint ci ratio: 4.202590e-01	ci left: 3.388629e-05	ci right 5.231959e-05	k: 86	n:2030000
Cons ci ratio: 1.260409e-02	ci left: 4.519506e-02	ci right 4.576880e-02	k: 92327	n:2030000
KS ci ratio: 2.778677e-01	ci left: 8.442412e-05	ci right 1.121092e-04	k: 198	n:2030000
COL6A6   2030000 perm   2172 sec   (934 perm/sec)   p_kst 9.753695e-05   p_cons 4.548128e-02   p_joint 4.236453e-05

Joint ci ratio: 4.155100e-01	ci left: 3.459748e-05	ci right 5.314604e-05	k: 88	n:2040000
Cons ci ratio: 1.257243e-02	ci left: 4.520074e-02	ci right 4.577310e-02	k: 92792	n:2040000
KS ci ratio: 2.771722e-01	ci left: 8.446636e-05	ci right 1.120839e-04	k: 199	n:2040000
COL6A6   2040000 perm   2190 sec   (931 perm/sec)   p_kst 9.754902e-05   p_cons 4.548627e-02   p_joint 4.313725e-05

Joint ci ratio: 4.155100e-01	ci left: 3.442871e-05	ci right 5.288679e-05	k: 88	n:2050000
Cons ci ratio: 1.254264e-02	ci left: 4.519518e-02	ci right 4.576610e-02	k: 93234	n:2050000
KS ci ratio: 2.771723e-01	ci left: 8.405433e-05	ci right 1.115371e-04	k: 199	n:2050000
COL6A6   2050000 perm   2208 sec   (928 perm/sec)   p_kst 9.707317e-05   p_cons 4.548000e-02   p_joint 4.292683e-05

Joint ci ratio: 4.131952e-01	ci left: 3.469641e-05	ci right 5.316583e-05	k: 89	n:2060000
Cons ci ratio: 1.251095e-02	ci left: 4.520420e-02	ci right 4.577378e-02	k: 93706	n:2060000
KS ci ratio: 2.764819e-01	ci left: 8.409804e-05	ci right 1.115147e-04	k: 200	n:2060000
COL6A6   2060000 perm   2226 sec   (925 perm/sec)   p_kst 9.708738e-05   p_cons 4.548835e-02   p_joint 4.320388e-05

Joint ci ratio: 4.131952e-01	ci left: 3.452879e-05	ci right 5.290899e-05	k: 89	n:2070000
Cons ci ratio: 1.248139e-02	ci left: 4.520012e-02	ci right 4.576830e-02	k: 94151	n:2070000
KS ci ratio: 2.764820e-01	ci left: 8.369177e-05	ci right 1.109760e-04	k: 200	n:2070000
COL6A6   2070000 perm   2245 sec   (922 perm/sec)   p_kst 9.661836e-05   p_cons 4.548357e-02   p_joint 4.299517e-05

Joint ci ratio: 4.131952e-01	ci left: 3.436278e-05	ci right 5.265462e-05	k: 89	n:2080000
Cons ci ratio: 1.245078e-02	ci left: 4.520472e-02	ci right 4.577155e-02	k: 94614	n:2080000
KS ci ratio: 2.764821e-01	ci left: 8.328940e-05	ci right 1.104425e-04	k: 200	n:2080000
COL6A6   2080000 perm   2263 sec   (919 perm/sec)   p_kst 9.615385e-05   p_cons 4.548750e-02   p_joint 4.278846e-05

Joint ci ratio: 4.131953e-01	ci left: 3.419837e-05	ci right 5.240269e-05	k: 89	n:2090000
Cons ci ratio: 1.241979e-02	ci left: 4.521356e-02	ci right 4.577908e-02	k: 95086	n:2090000
KS ci ratio: 2.757968e-01	ci left: 8.333623e-05	ci right 1.104256e-04	k: 201	n:2090000
COL6A6   2090000 perm   2282 sec   (916 perm/sec)   p_kst 9.617225e-05   p_cons 4.549569e-02   p_joint 4.258373e-05

Joint ci ratio: 4.131953e-01	ci left: 3.403552e-05	ci right 5.215315e-05	k: 89	n:2100000
Cons ci ratio: 1.239086e-02	ci left: 4.520951e-02	ci right 4.577365e-02	k: 95531	n:2100000
KS ci ratio: 2.757969e-01	ci left: 8.293939e-05	ci right 1.098997e-04	k: 201	n:2100000
COL6A6   2100000 perm   2300 sec   (913 perm/sec)   p_kst 9.571429e-05   p_cons 4.549095e-02   p_joint 4.238095e-05

Joint ci ratio: 4.109187e-01	ci left: 3.429901e-05	ci right 5.242879e-05	k: 90	n:2110000
Cons ci ratio: 1.236045e-02	ci left: 4.521731e-02	ci right 4.578015e-02	k: 96001	n:2110000
KS ci ratio: 2.757970e-01	ci left: 8.254631e-05	ci right 1.093789e-04	k: 201	n:2110000
COL6A6   2110000 perm   2318 sec   (910 perm/sec)   p_kst 9.526066e-05   p_cons 4.549810e-02   p_joint 4.265403e-05

Joint ci ratio: 4.131954e-01	ci left: 3.371443e-05	ci right 5.166115e-05	k: 89	n:2120000
Cons ci ratio: 1.233086e-02	ci left: 4.522080e-02	ci right 4.578233e-02	k: 96462	n:2120000
KS ci ratio: 2.757970e-01	ci left: 8.215694e-05	ci right 1.088629e-04	k: 201	n:2120000
COL6A6   2120000 perm   2337 sec   (907 perm/sec)   p_kst 9.481132e-05   p_cons 4.550094e-02   p_joint 4.198113e-05

Joint ci ratio: 4.109188e-01	ci left: 3.397695e-05	ci right 5.193650e-05	k: 90	n:2130000
Cons ci ratio: 1.230261e-02	ci left: 4.521630e-02	ci right 4.577648e-02	k: 96906	n:2130000
KS ci ratio: 2.751169e-01	ci left: 8.220828e-05	ci right 1.088537e-04	k: 202	n:2130000
COL6A6   2130000 perm   2356 sec   (904 perm/sec)   p_kst 9.483568e-05   p_cons 4.549577e-02   p_joint 4.225352e-05

Joint ci ratio: 4.155104e-01	ci left: 3.298077e-05	ci right 5.066259e-05	k: 88	n:2140000
Cons ci ratio: 1.227581e-02	ci left: 4.520300e-02	ci right 4.576178e-02	k: 97331	n:2140000
KS ci ratio: 2.751169e-01	ci left: 8.182413e-05	ci right 1.083450e-04	k: 202	n:2140000
COL6A6   2140000 perm   2375 sec   (901 perm/sec)   p_kst 9.439252e-05   p_cons 4.548178e-02   p_joint 4.112150e-05

Joint ci ratio: 2.546173e-01	ci left: 9.620924e-05	ci right 1.247009e-04	k: 236	n:2150000
Cons ci ratio: 1.167340e-02	ci left: 4.954439e-02	ci right 5.012659e-02	k: 107145	n:2150000
KS ci ratio: 2.724457e-01	ci left: 8.317633e-05	ci right 1.098289e-04	k: 206	n:2150000
COL6A6   2150000 perm   2393 sec   (898 perm/sec)   p_kst 9.581395e-05   p_cons 4.983488e-02   p_joint 1.097674e-04

Joint ci ratio: 2.535496e-01	ci left: 9.663080e-05	ci right 1.251084e-04	k: 238	n:2160000
Cons ci ratio: 1.164893e-02	ci left: 4.952413e-02	ci right 5.010486e-02	k: 107598	n:2160000
KS ci ratio: 2.724457e-01	ci left: 8.279125e-05	ci right 1.093205e-04	k: 206	n:2160000
COL6A6   2160000 perm   2412 sec   (896 perm/sec)   p_kst 9.537037e-05   p_cons 4.981389e-02   p_joint 1.101852e-04

Joint ci ratio: 2.595946e-01	ci left: 9.144225e-05	ci right 1.191375e-04	k: 227	n:2170000
Cons ci ratio: 1.162031e-02	ci left: 4.953898e-02	ci right 5.011845e-02	k: 108127	n:2170000
KS ci ratio: 2.717900e-01	ci left: 8.283912e-05	ci right 1.093089e-04	k: 207	n:2170000
COL6A6   2170000 perm   2431 sec   (893 perm/sec)   p_kst 9.539171e-05   p_cons 4.982811e-02   p_joint 1.046083e-04

Joint ci ratio: 2.595947e-01	ci left: 9.102279e-05	ci right 1.185910e-04	k: 227	n:2180000
Cons ci ratio: 1.159168e-02	ci left: 4.955552e-02	ci right 5.013375e-02	k: 108660	n:2180000
KS ci ratio: 2.717901e-01	ci left: 8.245912e-05	ci right 1.088075e-04	k: 207	n:2180000
COL6A6   2180000 perm   2450 sec   (890 perm/sec)   p_kst 9.495413e-05   p_cons 4.984404e-02   p_joint 1.041284e-04

Joint ci ratio: 2.595948e-01	ci left: 9.060716e-05	ci right 1.180495e-04	k: 227	n:2190000
Cons ci ratio: 1.156560e-02	ci left: 4.955279e-02	ci right 5.012968e-02	k: 109151	n:2190000
KS ci ratio: 2.711391e-01	ci left: 8.250814e-05	ci right 1.087982e-04	k: 208	n:2190000
COL6A6   2190000 perm   2469 sec   (887 perm/sec)   p_kst 9.497717e-05   p_cons 4.984064e-02   p_joint 1.036530e-04

Joint ci ratio: 2.573470e-01	ci left: 9.189571e-05	ci right 1.194486e-04	k: 231	n:2200000
Cons ci ratio: 1.153820e-02	ci left: 4.956233e-02	ci right 5.013795e-02	k: 109669	n:2200000
KS ci ratio: 2.698509e-01	ci left: 8.298055e-05	ci right 1.092743e-04	k: 210	n:2200000
COL6A6   2200000 perm   2488 sec   (884 perm/sec)   p_kst 9.545455e-05   p_cons 4.984955e-02   p_joint 1.050000e-04

Joint ci ratio: 2.573470e-01	ci left: 9.147989e-05	ci right 1.189081e-04	k: 231	n:2210000
Cons ci ratio: 1.151204e-02	ci left: 4.956320e-02	ci right 5.013752e-02	k: 110168	n:2210000
KS ci ratio: 2.698510e-01	ci left: 8.260507e-05	ci right 1.087799e-04	k: 210	n:2210000
COL6A6   2210000 perm   2508 sec   (881 perm/sec)   p_kst 9.502262e-05   p_cons 4.984977e-02   p_joint 1.045249e-04

Joint ci ratio: 2.567942e-01	ci left: 9.148925e-05	ci right 1.188519e-04	k: 232	n:2220000
Cons ci ratio: 1.148715e-02	ci left: 4.955509e-02	ci right 5.012807e-02	k: 110647	n:2220000
KS ci ratio: 2.692138e-01	ci left: 8.265299e-05	ci right 1.087707e-04	k: 211	n:2220000
COL6A6   2220000 perm   2528 sec   (878 perm/sec)   p_kst 9.504505e-05   p_cons 4.984099e-02   p_joint 1.045045e-04

Joint ci ratio: 2.567943e-01	ci left: 9.107898e-05	ci right 1.183190e-04	k: 232	n:2230000
Cons ci ratio: 1.146285e-02	ci left: 4.954347e-02	ci right 5.011509e-02	k: 111118	n:2230000
KS ci ratio: 2.685811e-01	ci left: 8.270055e-05	ci right 1.087615e-04	k: 212	n:2230000
COL6A6   2230000 perm   2548 sec   (875 perm/sec)   p_kst 9.506726e-05   p_cons 4.982870e-02   p_joint 1.040359e-04

Joint ci ratio: 2.567943e-01	ci left: 9.067238e-05	ci right 1.177908e-04	k: 232	n:2240000
Cons ci ratio: 1.143515e-02	ci left: 4.956135e-02	ci right 5.013178e-02	k: 111655	n:2240000
KS ci ratio: 2.685811e-01	ci left: 8.233135e-05	ci right 1.082760e-04	k: 212	n:2240000
COL6A6   2240000 perm   2567 sec   (872 perm/sec)   p_kst 9.464286e-05   p_cons 4.984598e-02   p_joint 1.035714e-04

Joint ci ratio: 2.567944e-01	ci left: 9.026938e-05	ci right 1.172672e-04	k: 232	n:2250000
Cons ci ratio: 1.140824e-02	ci left: 4.957419e-02	ci right 5.014342e-02	k: 112181	n:2250000
KS ci ratio: 2.667094e-01	ci left: 8.320931e-05	ci right 1.092173e-04	k: 215	n:2250000
COL6A6   2250000 perm   2587 sec   (870 perm/sec)   p_kst 9.555556e-05   p_cons 4.985822e-02   p_joint 1.031111e-04

Joint ci ratio: 2.590277e-01	ci left: 8.821444e-05	ci right 1.148643e-04	k: 228	n:2260000
Cons ci ratio: 1.138316e-02	ci left: 4.957323e-02	ci right 5.014119e-02	k: 112676	n:2260000
KS ci ratio: 2.660941e-01	ci left: 8.325406e-05	ci right 1.092060e-04	k: 216	n:2260000
COL6A6   2260000 perm   2607 sec   (867 perm/sec)   p_kst 9.557522e-05   p_cons 4.985664e-02   p_joint 1.008850e-04

Joint ci ratio: 2.590278e-01	ci left: 8.782583e-05	ci right 1.143583e-04	k: 228	n:2270000
Cons ci ratio: 1.135782e-02	ci left: 4.957581e-02	ci right 5.014252e-02	k: 113179	n:2270000
KS ci ratio: 2.654831e-01	ci left: 8.329848e-05	ci right 1.091947e-04	k: 217	n:2270000
COL6A6   2270000 perm   2627 sec   (864 perm/sec)   p_kst 9.559471e-05   p_cons 4.985859e-02   p_joint 1.004405e-04

Joint ci ratio: 2.590278e-01	ci left: 8.744063e-05	ci right 1.138567e-04	k: 228	n:2280000
Cons ci ratio: 1.133339e-02	ci left: 4.957223e-02	ci right 5.013768e-02	k: 113668	n:2280000
KS ci ratio: 2.654831e-01	ci left: 8.293313e-05	ci right 1.087158e-04	k: 217	n:2280000
COL6A6   2280000 perm   2646 sec   (862 perm/sec)   p_kst 9.517544e-05   p_cons 4.985439e-02   p_joint 1.000000e-04

Joint ci ratio: 2.584641e-01	ci left: 8.746715e-05	ci right 1.138245e-04	k: 229	n:2290000
Cons ci ratio: 1.130875e-02	ci left: 4.957174e-02	ci right 5.013595e-02	k: 114164	n:2290000
KS ci ratio: 2.654832e-01	ci left: 8.257098e-05	ci right 1.082411e-04	k: 217	n:2290000
COL6A6   2290000 perm   2665 sec   (859 perm/sec)   p_kst 9.475983e-05   p_cons 4.985328e-02   p_joint 1.000000e-04

Joint ci ratio: 2.573476e-01	ci left: 8.790022e-05	ci right 1.142552e-04	k: 231	n:2300000
Cons ci ratio: 1.128267e-02	ci left: 4.958470e-02	ci right 5.014774e-02	k: 114691	n:2300000
KS ci ratio: 2.648764e-01	ci left: 8.261786e-05	ci right 1.082341e-04	k: 218	n:2300000
COL6A6   2300000 perm   2685 sec   (856 perm/sec)   p_kst 9.478261e-05   p_cons 4.986565e-02   p_joint 1.004348e-04

Joint ci ratio: 2.573476e-01	ci left: 8.751970e-05	ci right 1.137606e-04	k: 231	n:2310000
Cons ci ratio: 1.125975e-02	ci left: 4.957250e-02	ci right 5.013426e-02	k: 115160	n:2310000
KS ci ratio: 2.648764e-01	ci left: 8.226020e-05	ci right 1.077655e-04	k: 218	n:2310000
COL6A6   2310000 perm   2705 sec   (854 perm/sec)   p_kst 9.437229e-05   p_cons 4.985281e-02   p_joint 1.000000e-04

Joint ci ratio: 2.573477e-01	ci left: 8.714246e-05	ci right 1.132703e-04	k: 231	n:2320000
Cons ci ratio: 1.123497e-02	ci left: 4.957718e-02	ci right 5.013774e-02	k: 115668	n:2320000
KS ci ratio: 2.648765e-01	ci left: 8.190563e-05	ci right 1.073010e-04	k: 218	n:2320000
COL6A6   2320000 perm   2725 sec   (851 perm/sec)   p_kst 9.396552e-05   p_cons 4.985690e-02   p_joint 9.956897e-05

Joint ci ratio: 2.567948e-01	ci left: 8.716999e-05	ci right 1.132409e-04	k: 232	n:2330000
Cons ci ratio: 1.121157e-02	ci left: 4.957154e-02	ci right 5.013087e-02	k: 116152	n:2330000
KS ci ratio: 2.648765e-01	ci left: 8.155410e-05	ci right 1.068405e-04	k: 218	n:2330000
COL6A6   2330000 perm   2746 sec   (849 perm/sec)   p_kst 9.356223e-05   p_cons 4.985064e-02   p_joint 9.957082e-05

Joint ci ratio: 2.567949e-01	ci left: 8.679746e-05	ci right 1.127570e-04	k: 232	n:2340000
Cons ci ratio: 1.118858e-02	ci left: 4.956382e-02	ci right 5.012191e-02	k: 116631	n:2340000
KS ci ratio: 2.636752e-01	ci left: 8.200366e-05	ci right 1.072951e-04	k: 220	n:2340000
COL6A6   2340000 perm   2767 sec   (846 perm/sec)   p_kst 9.401709e-05   p_cons 4.984231e-02   p_joint 9.914530e-05

Joint ci ratio: 2.567950e-01	ci left: 8.642811e-05	ci right 1.122772e-04	k: 232	n:2350000
Cons ci ratio: 1.116642e-02	ci left: 4.955023e-02	ci right 5.010705e-02	k: 117096	n:2350000
KS ci ratio: 2.636753e-01	ci left: 8.165471e-05	ci right 1.068385e-04	k: 220	n:2350000
COL6A6   2350000 perm   2788 sec   (843 perm/sec)   p_kst 9.361702e-05   p_cons 4.982809e-02   p_joint 9.872340e-05

Joint ci ratio: 2.567950e-01	ci left: 8.606189e-05	ci right 1.118014e-04	k: 232	n:2360000
Cons ci ratio: 1.114201e-02	ci left: 4.955704e-02	ci right 5.011271e-02	k: 117609	n:2360000
KS ci ratio: 2.636753e-01	ci left: 8.130871e-05	ci right 1.063858e-04	k: 220	n:2360000
COL6A6   2360000 perm   2808 sec   (840 perm/sec)   p_kst 9.322034e-05   p_cons 4.983432e-02   p_joint 9.830508e-05

Joint ci ratio: 2.562457e-01	ci left: 8.609357e-05	ci right 1.117787e-04	k: 233	n:2370000
Cons ci ratio: 1.111820e-02	ci left: 4.956000e-02	ci right 5.011451e-02	k: 118113	n:2370000
KS ci ratio: 2.636754e-01	ci left: 8.096564e-05	ci right 1.059370e-04	k: 220	n:2370000
COL6A6   2370000 perm   2829 sec   (838 perm/sec)   p_kst 9.282700e-05   p_cons 4.983671e-02   p_joint 9.831224e-05

Joint ci ratio: 2.556999e-01	ci left: 8.612505e-05	ci right 1.117561e-04	k: 234	n:2380000
Cons ci ratio: 1.109523e-02	ci left: 4.955708e-02	ci right 5.011040e-02	k: 118603	n:2380000
KS ci ratio: 2.630808e-01	ci left: 8.101788e-05	ci right 1.059397e-04	k: 221	n:2380000
COL6A6   2380000 perm   2850 sec   (835 perm/sec)   p_kst 9.285714e-05   p_cons 4.983319e-02   p_joint 9.831933e-05

Joint ci ratio: 2.540832e-01	ci left: 8.693974e-05	ci right 1.126238e-04	k: 237	n:2390000
Cons ci ratio: 1.107161e-02	ci left: 4.956086e-02	ci right 5.011304e-02	k: 119109	n:2390000
KS ci ratio: 2.630809e-01	ci left: 8.067889e-05	ci right 1.054964e-04	k: 221	n:2390000
COL6A6   2390000 perm   2871 sec   (832 perm/sec)   p_kst 9.246862e-05   p_cons 4.983640e-02   p_joint 9.916318e-05

Joint ci ratio: 2.540832e-01	ci left: 8.657749e-05	ci right 1.121545e-04	k: 237	n:2400000
Cons ci ratio: 1.104961e-02	ci left: 4.955214e-02	ci right 5.010312e-02	k: 119585	n:2400000
KS ci ratio: 2.624904e-01	ci left: 8.073195e-05	ci right 1.055009e-04	k: 222	n:2400000
COL6A6   2400000 perm   2893 sec   (830 perm/sec)   p_kst 9.250000e-05   p_cons 4.982708e-02   p_joint 9.875000e-05

Joint ci ratio: 2.540833e-01	ci left: 8.621825e-05	ci right 1.116891e-04	k: 237	n:2410000
Cons ci ratio: 1.102644e-02	ci left: 4.955466e-02	ci right 5.010451e-02	k: 120088	n:2410000
KS ci ratio: 2.624904e-01	ci left: 8.039696e-05	ci right 1.050632e-04	k: 222	n:2410000
COL6A6   2410000 perm   2914 sec   (827 perm/sec)   p_kst 9.211618e-05   p_cons 4.982905e-02   p_joint 9.834025e-05

Joint ci ratio: 2.535511e-01	ci left: 8.624891e-05	ci right 1.116671e-04	k: 238	n:2420000
Cons ci ratio: 1.100436e-02	ci left: 4.954893e-02	ci right 5.009760e-02	k: 120571	n:2420000
KS ci ratio: 2.607423e-01	ci left: 8.122312e-05	ci right 1.059498e-04	k: 225	n:2420000
COL6A6   2420000 perm   2935 sec   (824 perm/sec)   p_kst 9.297521e-05   p_cons 4.982273e-02   p_joint 9.834711e-05

Joint ci ratio: 2.524968e-01	ci left: 8.666484e-05	ci right 1.120826e-04	k: 240	n:2430000
Cons ci ratio: 1.098257e-02	ci left: 4.954201e-02	ci right 5.008951e-02	k: 121051	n:2430000
KS ci ratio: 2.601673e-01	ci left: 8.127353e-05	ci right 1.059521e-04	k: 226	n:2430000
COL6A6   2430000 perm   2957 sec   (822 perm/sec)   p_kst 9.300412e-05   p_cons 4.981523e-02   p_joint 9.876543e-05

Joint ci ratio: 2.509397e-01	ci left: 8.746161e-05	ci right 1.129302e-04	k: 243	n:2440000
Cons ci ratio: 1.096199e-02	ci left: 4.952575e-02	ci right 5.007204e-02	k: 121508	n:2440000
KS ci ratio: 2.601674e-01	ci left: 8.094044e-05	ci right 1.055179e-04	k: 226	n:2440000
COL6A6   2440000 perm   2978 sec   (819 perm/sec)   p_kst 9.262295e-05   p_cons 4.979836e-02   p_joint 9.959016e-05

Joint ci ratio: 2.509397e-01	ci left: 8.710462e-05	ci right 1.124692e-04	k: 243	n:2450000
Cons ci ratio: 1.093851e-02	ci left: 4.953568e-02	ci right 5.008090e-02	k: 122029	n:2450000
KS ci ratio: 2.584650e-01	ci left: 8.175498e-05	ci right 1.063911e-04	k: 229	n:2450000
COL6A6   2450000 perm   3000 sec   (817 perm/sec)   p_kst 9.346939e-05   p_cons 4.980776e-02   p_joint 9.918367e-05

Joint ci ratio: 2.504271e-01	ci left: 8.713151e-05	ci right 1.124440e-04	k: 244	n:2460000
Cons ci ratio: 1.091561e-02	ci left: 4.954187e-02	ci right 5.008602e-02	k: 122541	n:2460000
KS ci ratio: 2.584650e-01	ci left: 8.142264e-05	ci right 1.059586e-04	k: 229	n:2460000
COL6A6   2460000 perm   3021 sec   (814 perm/sec)   p_kst 9.308943e-05   p_cons 4.981341e-02   p_joint 9.918699e-05

Joint ci ratio: 2.504271e-01	ci left: 8.677875e-05	ci right 1.119888e-04	k: 244	n:2470000
Cons ci ratio: 1.089424e-02	ci left: 4.953591e-02	ci right 5.007891e-02	k: 123023	n:2470000
KS ci ratio: 2.584651e-01	ci left: 8.109299e-05	ci right 1.055296e-04	k: 229	n:2470000
COL6A6   2470000 perm   3043 sec   (812 perm/sec)   p_kst 9.271255e-05   p_cons 4.980688e-02   p_joint 9.878543e-05

Joint ci ratio: 2.494112e-01	ci left: 8.718478e-05	ci right 1.123941e-04	k: 246	n:2480000
Cons ci ratio: 1.087360e-02	ci left: 4.952476e-02	ci right 5.006661e-02	k: 123492	n:2480000
KS ci ratio: 2.584651e-01	ci left: 8.076600e-05	ci right 1.051041e-04	k: 229	n:2480000
COL6A6   2480000 perm   3064 sec   (809 perm/sec)   p_kst 9.233871e-05   p_cons 4.979516e-02   p_joint 9.919355e-05

Joint ci ratio: 2.494112e-01	ci left: 8.683464e-05	ci right 1.119427e-04	k: 246	n:2490000
Cons ci ratio: 1.085156e-02	ci left: 4.952693e-02	ci right 5.006769e-02	k: 123994	n:2490000
KS ci ratio: 2.579050e-01	ci left: 8.081726e-05	ci right 1.051095e-04	k: 230	n:2490000
COL6A6   2490000 perm   3086 sec   (807 perm/sec)   p_kst 9.236948e-05   p_cons 4.979679e-02   p_joint 9.879518e-05

Joint ci ratio: 2.494113e-01	ci left: 8.648730e-05	ci right 1.114949e-04	k: 246	n:2500000
Cons ci ratio: 1.082946e-02	ci left: 4.953067e-02	ci right 5.007037e-02	k: 124500	n:2500000
KS ci ratio: 2.562464e-01	ci left: 8.161668e-05	ci right 1.059662e-04	k: 233	n:2500000
COL6A6   2500000 perm   3109 sec   (804 perm/sec)   p_kst 9.320000e-05   p_cons 4.980000e-02   p_joint 9.840000e-05

Joint ci ratio: 2.494113e-01	ci left: 8.614272e-05	ci right 1.110507e-04	k: 246	n:2510000
Cons ci ratio: 1.080833e-02	ci left: 4.952723e-02	ci right 5.006584e-02	k: 124988	n:2510000
KS ci ratio: 2.551582e-01	ci left: 8.203727e-05	ci right 1.063918e-04	k: 235	n:2510000
COL6A6   2510000 perm   3131 sec   (802 perm/sec)   p_kst 9.362550e-05   p_cons 4.979602e-02   p_joint 9.800797e-05

Joint ci ratio: 2.494114e-01	ci left: 8.580089e-05	ci right 1.106101e-04	k: 246	n:2520000
Cons ci ratio: 1.078740e-02	ci left: 4.952303e-02	ci right 5.006054e-02	k: 125474	n:2520000
KS ci ratio: 2.551583e-01	ci left: 8.171172e-05	ci right 1.059697e-04	k: 235	n:2520000
COL6A6   2520000 perm   3152 sec   (799 perm/sec)   p_kst 9.325397e-05   p_cons 4.979127e-02   p_joint 9.761905e-05

Joint ci ratio: 2.494114e-01	ci left: 8.546175e-05	ci right 1.101729e-04	k: 246	n:2530000
Cons ci ratio: 1.076561e-02	ci left: 4.952754e-02	ci right 5.006400e-02	k: 125982	n:2530000
KS ci ratio: 2.546194e-01	ci left: 8.175876e-05	ci right 1.059713e-04	k: 236	n:2530000
COL6A6   2530000 perm   3174 sec   (797 perm/sec)   p_kst 9.328063e-05   p_cons 4.979526e-02   p_joint 9.723320e-05

Joint ci ratio: 2.613217e-01	ci left: 7.701785e-05	ci right 1.005249e-04	k: 224	n:2540000
Cons ci ratio: 1.074399e-02	ci left: 4.953162e-02	ci right 5.006704e-02	k: 126489	n:2540000
KS ci ratio: 2.540839e-01	ci left: 8.180548e-05	ci right 1.059728e-04	k: 237	n:2540000
COL6A6   2540000 perm   3196 sec   (795 perm/sec)   p_kst 9.330709e-05   p_cons 4.979882e-02   p_joint 8.818898e-05

Joint ci ratio: 2.613218e-01	ci left: 7.671581e-05	ci right 1.001307e-04	k: 224	n:2550000
Cons ci ratio: 1.072304e-02	ci left: 4.953098e-02	ci right 5.006534e-02	k: 126984	n:2550000
KS ci ratio: 2.540840e-01	ci left: 8.148467e-05	ci right 1.055572e-04	k: 237	n:2550000
COL6A6   2550000 perm   3217 sec   (793 perm/sec)   p_kst 9.294118e-05   p_cons 4.979765e-02   p_joint 8.784314e-05

Joint ci ratio: 2.607430e-01	ci left: 7.678121e-05	ci right 1.001557e-04	k: 225	n:2560000
Cons ci ratio: 1.070229e-02	ci left: 4.952956e-02	ci right 5.006287e-02	k: 127477	n:2560000
KS ci ratio: 2.535518e-01	ci left: 8.153215e-05	ci right 1.055603e-04	k: 238	n:2560000
COL6A6   2560000 perm   3240 sec   (790 perm/sec)   p_kst 9.296875e-05   p_cons 4.979570e-02   p_joint 8.789062e-05

Joint ci ratio: 2.624912e-01	ci left: 7.539167e-05	ci right 9.852230e-05	k: 222	n:2570000
Cons ci ratio: 1.068206e-02	ci left: 4.952466e-02	ci right 5.005690e-02	k: 127961	n:2570000
KS ci ratio: 2.535519e-01	ci left: 8.121490e-05	ci right 1.051496e-04	k: 238	n:2570000
COL6A6   2570000 perm   3262 sec   (788 perm/sec)   p_kst 9.260700e-05   p_cons 4.979027e-02   p_joint 8.638132e-05

Joint ci ratio: 2.613219e-01	ci left: 7.582376e-05	ci right 9.896640e-05	k: 224	n:2580000
Cons ci ratio: 1.066121e-02	ci left: 4.952637e-02	ci right 5.005759e-02	k: 128462	n:2580000
KS ci ratio: 2.535519e-01	ci left: 8.090011e-05	ci right 1.047420e-04	k: 238	n:2580000
COL6A6   2580000 perm   3285 sec   (785 perm/sec)   p_kst 9.224806e-05   p_cons 4.979147e-02   p_joint 8.682171e-05

Joint ci ratio: 2.613219e-01	ci left: 7.553101e-05	ci right 9.858429e-05	k: 224	n:2590000
Cons ci ratio: 1.063886e-02	ci left: 4.954232e-02	ci right 5.007259e-02	k: 129000	n:2590000
KS ci ratio: 2.530231e-01	ci left: 8.094935e-05	ci right 1.047482e-04	k: 239	n:2590000
COL6A6   2590000 perm   3307 sec   (783 perm/sec)   p_kst 9.227799e-05   p_cons 4.980695e-02   p_joint 8.648649e-05

Joint ci ratio: 2.601681e-01	ci left: 7.595946e-05	ci right 9.902451e-05	k: 226	n:2600000
Cons ci ratio: 1.061783e-02	ci left: 4.954779e-02	ci right 5.007706e-02	k: 129511	n:2600000
KS ci ratio: 2.519754e-01	ci left: 8.135857e-05	ci right 1.051631e-04	k: 241	n:2600000
COL6A6   2600000 perm   3329 sec   (781 perm/sec)   p_kst 9.269231e-05   p_cons 4.981192e-02   p_joint 8.692308e-05

Joint ci ratio: 2.449879e-01	ci left: 8.607693e-05	ci right 1.104574e-04	k: 255	n:2610000
Cons ci ratio: 1.059619e-02	ci left: 4.955971e-02	ci right 5.008803e-02	k: 130039	n:2610000
KS ci ratio: 2.479106e-01	ci left: 8.392003e-05	ci right 1.080169e-04	k: 249	n:2610000
COL6A6   2610000 perm   3352 sec   (779 perm/sec)   p_kst 9.540230e-05   p_cons 4.982337e-02   p_joint 9.770115e-05

Joint ci ratio: 2.445108e-01	ci left: 8.610667e-05	ci right 1.104408e-04	k: 256	n:2620000
Cons ci ratio: 1.057442e-02	ci left: 4.957383e-02	ci right 5.010121e-02	k: 130573	n:2620000
KS ci ratio: 2.479107e-01	ci left: 8.359972e-05	ci right 1.076046e-04	k: 249	n:2620000
COL6A6   2620000 perm   3375 sec   (776 perm/sec)   p_kst 9.503817e-05   p_cons 4.983702e-02   p_joint 9.770992e-05

Joint ci ratio: 2.445109e-01	ci left: 8.577926e-05	ci right 1.100209e-04	k: 256	n:2630000
Cons ci ratio: 1.055631e-02	ci left: 4.955637e-02	ci right 5.008265e-02	k: 131024	n:2630000
KS ci ratio: 2.479107e-01	ci left: 8.328185e-05	ci right 1.071954e-04	k: 249	n:2630000
COL6A6   2630000 perm   3397 sec   (774 perm/sec)   p_kst 9.467681e-05   p_cons 4.981901e-02   p_joint 9.733840e-05

Joint ci ratio: 2.435650e-01	ci left: 8.616560e-05	ci right 1.104080e-04	k: 258	n:2640000
Cons ci ratio: 1.053672e-02	ci left: 4.955302e-02	ci right 5.007828e-02	k: 131512	n:2640000
KS ci ratio: 2.474164e-01	ci left: 8.332167e-05	ci right 1.071916e-04	k: 250	n:2640000
COL6A6   2640000 perm   3420 sec   (772 perm/sec)   p_kst 9.469697e-05   p_cons 4.981515e-02   p_joint 9.772727e-05

Joint ci ratio: 2.435650e-01	ci left: 8.584044e-05	ci right 1.099913e-04	k: 258	n:2650000
Cons ci ratio: 1.051729e-02	ci left: 4.954931e-02	ci right 5.007356e-02	k: 131999	n:2650000
KS ci ratio: 2.474164e-01	ci left: 8.300725e-05	ci right 1.067871e-04	k: 250	n:2650000
COL6A6   2650000 perm   3443 sec   (770 perm/sec)   p_kst 9.433962e-05   p_cons 4.981094e-02   p_joint 9.735849e-05

Joint ci ratio: 2.430962e-01	ci left: 8.587075e-05	ci right 1.099766e-04	k: 259	n:2660000
Cons ci ratio: 1.049826e-02	ci left: 4.954301e-02	ci right 5.006624e-02	k: 132479	n:2660000
KS ci ratio: 2.474165e-01	ci left: 8.269519e-05	ci right 1.063857e-04	k: 250	n:2660000
COL6A6   2660000 perm   3466 sec   (768 perm/sec)   p_kst 9.398496e-05   p_cons 4.980414e-02   p_joint 9.736842e-05

Joint ci ratio: 2.551589e-01	ci left: 7.712115e-05	ci right 1.000163e-04	k: 235	n:2670000
Cons ci ratio: 1.047850e-02	ci left: 4.954423e-02	ci right 5.006648e-02	k: 132979	n:2670000
KS ci ratio: 2.464366e-01	ci left: 8.308818e-05	ci right 1.067826e-04	k: 252	n:2670000
COL6A6   2670000 perm   3488 sec   (765 perm/sec)   p_kst 9.438202e-05   p_cons 4.980487e-02   p_joint 8.801498e-05

Joint ci ratio: 2.540845e-01	ci left: 7.753204e-05	ci right 1.004369e-04	k: 237	n:2680000
Cons ci ratio: 1.045869e-02	ci left: 4.954693e-02	ci right 5.006822e-02	k: 133483	n:2680000
KS ci ratio: 2.449883e-01	ci left: 8.382864e-05	ci right 1.075723e-04	k: 255	n:2680000
COL6A6   2680000 perm   3512 sec   (763 perm/sec)   p_kst 9.514925e-05   p_cons 4.980709e-02   p_joint 8.843284e-05

Joint ci ratio: 2.535524e-01	ci left: 7.759191e-05	ci right 1.004589e-04	k: 238	n:2690000
Cons ci ratio: 1.044038e-02	ci left: 4.953701e-02	ci right 5.005727e-02	k: 133953	n:2690000
KS ci ratio: 2.445112e-01	ci left: 8.386596e-05	ci right 1.075669e-04	k: 256	n:2690000
COL6A6   2690000 perm   3535 sec   (761 perm/sec)   p_kst 9.516729e-05   p_cons 4.979665e-02   p_joint 8.847584e-05

Joint ci ratio: 2.535525e-01	ci left: 7.730454e-05	ci right 1.000868e-04	k: 238	n:2700000
Cons ci ratio: 1.042042e-02	ci left: 4.954304e-02	ci right 5.006237e-02	k: 134466	n:2700000
KS ci ratio: 2.435652e-01	ci left: 8.425080e-05	ci right 1.079545e-04	k: 258	n:2700000
COL6A6   2700000 perm   3558 sec   (759 perm/sec)   p_kst 9.555556e-05   p_cons 4.980222e-02   p_joint 8.814815e-05

Joint ci ratio: 2.535525e-01	ci left: 7.701928e-05	ci right 9.971751e-05	k: 238	n:2710000
Cons ci ratio: 1.040121e-02	ci left: 4.954315e-02	ci right 5.006151e-02	k: 134963	n:2710000
KS ci ratio: 2.426302e-01	ci left: 8.463296e-05	ci right 1.083390e-04	k: 260	n:2710000
COL6A6   2710000 perm   3581 sec   (757 perm/sec)   p_kst 9.594096e-05   p_cons 4.980185e-02   p_joint 8.782288e-05

Joint ci ratio: 2.535525e-01	ci left: 7.673612e-05	ci right 9.935090e-05	k: 238	n:2720000
Cons ci ratio: 1.038280e-02	ci left: 4.953701e-02	ci right 5.005439e-02	k: 135443	n:2720000
KS ci ratio: 2.426302e-01	ci left: 8.432181e-05	ci right 1.079407e-04	k: 260	n:2720000
COL6A6   2720000 perm   3604 sec   (755 perm/sec)   p_kst 9.558824e-05   p_cons 4.979522e-02   p_joint 8.750000e-05

Joint ci ratio: 2.530237e-01	ci left: 7.679808e-05	ci right 9.937649e-05	k: 239	n:2730000
Cons ci ratio: 1.036297e-02	ci left: 4.954481e-02	ci right 5.006127e-02	k: 135961	n:2730000
KS ci ratio: 2.421667e-01	ci left: 8.435699e-05	ci right 1.079338e-04	k: 261	n:2730000
COL6A6   2730000 perm   3628 sec   (752 perm/sec)   p_kst 9.560440e-05   p_cons 4.980256e-02   p_joint 8.754579e-05

Joint ci ratio: 2.524982e-01	ci left: 7.685964e-05	ci right 9.940183e-05	k: 240	n:2740000
Cons ci ratio: 1.034292e-02	ci left: 4.955547e-02	ci right 5.007103e-02	k: 136487	n:2740000
KS ci ratio: 2.421668e-01	ci left: 8.404912e-05	ci right 1.075399e-04	k: 261	n:2740000
COL6A6   2740000 perm   3652 sec   (750 perm/sec)   p_kst 9.525547e-05   p_cons 4.981277e-02   p_joint 8.759124e-05

Joint ci ratio: 2.546203e-01	ci left: 7.521803e-05	ci right 9.749360e-05	k: 236	n:2750000
Cons ci ratio: 1.032418e-02	ci left: 4.955516e-02	ci right 5.006979e-02	k: 136983	n:2750000
KS ci ratio: 2.412477e-01	ci left: 8.442672e-05	ci right 1.079201e-04	k: 263	n:2750000
COL6A6   2750000 perm   3676 sec   (748 perm/sec)   p_kst 9.563636e-05   p_cons 4.981200e-02   p_joint 8.581818e-05

Joint ci ratio: 2.546204e-01	ci left: 7.494549e-05	ci right 9.714036e-05	k: 236	n:2760000
Cons ci ratio: 1.030563e-02	ci left: 4.955414e-02	ci right 5.006782e-02	k: 137477	n:2760000
KS ci ratio: 2.412477e-01	ci left: 8.412082e-05	ci right 1.075290e-04	k: 263	n:2760000
COL6A6   2760000 perm   3700 sec   (746 perm/sec)   p_kst 9.528986e-05   p_cons 4.981051e-02   p_joint 8.550725e-05

Joint ci ratio: 2.535527e-01	ci left: 7.535098e-05	ci right 9.755758e-05	k: 238	n:2770000
Cons ci ratio: 1.028717e-02	ci left: 4.955312e-02	ci right 5.006587e-02	k: 137971	n:2770000
KS ci ratio: 2.407921e-01	ci left: 8.415635e-05	ci right 1.075236e-04	k: 264	n:2770000
COL6A6   2770000 perm   3723 sec   (744 perm/sec)   p_kst 9.530686e-05   p_cons 4.980903e-02   p_joint 8.592058e-05

Joint ci ratio: 2.530239e-01	ci left: 7.541681e-05	ci right 9.758915e-05	k: 239	n:2780000
Cons ci ratio: 1.026826e-02	ci left: 4.955714e-02	ci right 5.006898e-02	k: 138479	n:2780000
KS ci ratio: 2.403391e-01	ci left: 8.419166e-05	ci right 1.075182e-04	k: 265	n:2780000
COL6A6   2780000 perm   3748 sec   (742 perm/sec)   p_kst 9.532374e-05   p_cons 4.981259e-02   p_joint 8.597122e-05

Joint ci ratio: 2.524984e-01	ci left: 7.548222e-05	ci right 9.762045e-05	k: 240	n:2790000
Cons ci ratio: 1.024950e-02	ci left: 4.956077e-02	ci right 5.007171e-02	k: 138986	n:2790000
KS ci ratio: 2.398886e-01	ci left: 8.422676e-05	ci right 1.075128e-04	k: 266	n:2790000
COL6A6   2790000 perm   3772 sec   (740 perm/sec)   p_kst 9.534050e-05   p_cons 4.981577e-02   p_joint 8.602151e-05

Joint ci ratio: 2.509413e-01	ci left: 7.621649e-05	ci right 9.841067e-05	k: 243	n:2800000
Cons ci ratio: 1.023157e-02	ci left: 4.955761e-02	ci right 5.006761e-02	k: 139474	n:2800000
KS ci ratio: 2.398886e-01	ci left: 8.392595e-05	ci right 1.071288e-04	k: 266	n:2800000
COL6A6   2800000 perm   3796 sec   (738 perm/sec)   p_kst 9.500000e-05   p_cons 4.981214e-02   p_joint 8.678571e-05

Joint ci ratio: 2.509413e-01	ci left: 7.594525e-05	ci right 9.806046e-05	k: 243	n:2810000
Cons ci ratio: 1.021290e-02	ci left: 4.956228e-02	ci right 5.007139e-02	k: 139984	n:2810000
KS ci ratio: 2.394406e-01	ci left: 8.396178e-05	ci right 1.071248e-04	k: 267	n:2810000
COL6A6   2810000 perm   3820 sec   (736 perm/sec)   p_kst 9.501779e-05   p_cons 4.981637e-02   p_joint 8.647687e-05

Joint ci ratio: 2.504287e-01	ci left: 7.600828e-05	ci right 9.808957e-05	k: 244	n:2820000
Cons ci ratio: 1.019566e-02	ci left: 4.955453e-02	ci right 5.006271e-02	k: 140459	n:2820000
KS ci ratio: 2.394407e-01	ci left: 8.366404e-05	ci right 1.067449e-04	k: 267	n:2820000
COL6A6   2820000 perm   3844 sec   (734 perm/sec)   p_kst 9.468085e-05   p_cons 4.980816e-02   p_joint 8.652482e-05

Joint ci ratio: 2.499192e-01	ci left: 7.607090e-05	ci right 9.811843e-05	k: 245	n:2830000
Cons ci ratio: 1.017816e-02	ci left: 4.955002e-02	ci right 5.005727e-02	k: 140943	n:2830000
KS ci ratio: 2.394407e-01	ci left: 8.336841e-05	ci right 1.063677e-04	k: 267	n:2830000
COL6A6   2830000 perm   3869 sec   (732 perm/sec)   p_kst 9.434629e-05   p_cons 4.980318e-02   p_joint 8.657244e-05

Joint ci ratio: 2.494127e-01	ci left: 7.613313e-05	ci right 9.814704e-05	k: 246	n:2840000
Cons ci ratio: 1.016046e-02	ci left: 4.954834e-02	ci right 5.005469e-02	k: 141435	n:2840000
KS ci ratio: 2.385522e-01	ci left: 8.373692e-05	ci right 1.067395e-04	k: 269	n:2840000
COL6A6   2840000 perm   3893 sec   (729 perm/sec)   p_kst 9.471831e-05   p_cons 4.980106e-02   p_joint 8.661972e-05

Joint ci ratio: 2.494128e-01	ci left: 7.586600e-05	ci right 9.780266e-05	k: 246	n:2850000
Cons ci ratio: 1.014280e-02	ci left: 4.954703e-02	ci right 5.005248e-02	k: 141928	n:2850000
KS ci ratio: 2.385523e-01	ci left: 8.344310e-05	ci right 1.063650e-04	k: 269	n:2850000
COL6A6   2850000 perm   3918 sec   (727 perm/sec)   p_kst 9.438596e-05   p_cons 4.979930e-02   p_joint 8.631579e-05

Joint ci ratio: 2.489094e-01	ci left: 7.592855e-05	ci right 9.783214e-05	k: 247	n:2860000
Cons ci ratio: 1.012618e-02	ci left: 4.953701e-02	ci right 5.004152e-02	k: 142396	n:2860000
KS ci ratio: 2.385523e-01	ci left: 8.315134e-05	ci right 1.059931e-04	k: 269	n:2860000
COL6A6   2860000 perm   3942 sec   (726 perm/sec)   p_kst 9.405594e-05   p_cons 4.978881e-02   p_joint 8.636364e-05

Joint ci ratio: 2.489095e-01	ci left: 7.566399e-05	ci right 9.749126e-05	k: 247	n:2870000
Cons ci ratio: 1.010788e-02	ci left: 4.954340e-02	ci right 5.004706e-02	k: 142911	n:2870000
KS ci ratio: 2.381118e-01	ci left: 8.318924e-05	ci right 1.059929e-04	k: 270	n:2870000
COL6A6   2870000 perm   3966 sec   (724 perm/sec)   p_kst 9.407666e-05   p_cons 4.979477e-02   p_joint 8.606272e-05

Joint ci ratio: 2.484091e-01	ci left: 7.572685e-05	ci right 9.752156e-05	k: 248	n:2880000
Cons ci ratio: 1.009143e-02	ci left: 4.953346e-02	ci right 5.003620e-02	k: 143379	n:2880000
KS ci ratio: 2.381118e-01	ci left: 8.290039e-05	ci right 1.056249e-04	k: 270	n:2880000
COL6A6   2880000 perm   3990 sec   (722 perm/sec)   p_kst 9.375000e-05   p_cons 4.978437e-02   p_joint 8.611111e-05

Joint ci ratio: 2.479118e-01	ci left: 7.578933e-05	ci right 9.755161e-05	k: 249	n:2890000
Cons ci ratio: 1.007517e-02	ci left: 4.952256e-02	ci right 5.002437e-02	k: 143844	n:2890000
KS ci ratio: 2.381118e-01	ci left: 8.261353e-05	ci right 1.052594e-04	k: 270	n:2890000
COL6A6   2890000 perm   4016 sec   (720 perm/sec)   p_kst 9.342561e-05   p_cons 4.977301e-02   p_joint 8.615917e-05

Joint ci ratio: 2.474175e-01	ci left: 7.585141e-05	ci right 9.758141e-05	k: 250	n:2900000
Cons ci ratio: 1.005799e-02	ci left: 4.952102e-02	ci right 5.002195e-02	k: 144336	n:2900000
KS ci ratio: 2.372380e-01	ci left: 8.297725e-05	ci right 1.056271e-04	k: 272	n:2900000
COL6A6   2900000 perm   4041 sec   (718 perm/sec)   p_kst 9.379310e-05   p_cons 4.977103e-02   p_joint 8.620690e-05

Joint ci ratio: 2.469261e-01	ci left: 7.591311e-05	ci right 9.761097e-05	k: 251	n:2910000
Cons ci ratio: 1.004046e-02	ci left: 4.952360e-02	ci right 5.002369e-02	k: 144840	n:2910000
KS ci ratio: 2.368047e-01	ci left: 8.301534e-05	ci right 1.056281e-04	k: 273	n:2910000
COL6A6   2910000 perm   4067 sec   (716 perm/sec)   p_kst 9.381443e-05   p_cons 4.977320e-02   p_joint 8.625430e-05

Joint ci ratio: 2.464376e-01	ci left: 7.597443e-05	ci right 9.764027e-05	k: 252	n:2920000
Cons ci ratio: 1.002361e-02	ci left: 4.952071e-02	ci right 5.001991e-02	k: 145328	n:2920000
KS ci ratio: 2.363737e-01	ci left: 8.305321e-05	ci right 1.056291e-04	k: 274	n:2920000
COL6A6   2920000 perm   4092 sec   (714 perm/sec)   p_kst 9.383562e-05   p_cons 4.976986e-02   p_joint 8.630137e-05

Joint ci ratio: 2.459520e-01	ci left: 7.603538e-05	ci right 9.766934e-05	k: 253	n:2930000
Cons ci ratio: 1.000565e-02	ci left: 4.952906e-02	ci right 5.002746e-02	k: 145849	n:2930000
KS ci ratio: 2.359451e-01	ci left: 8.309086e-05	ci right 1.056301e-04	k: 275	n:2930000
COL6A6   2930000 perm   4117 sec   (712 perm/sec)   p_kst 9.385666e-05   p_cons 4.977782e-02   p_joint 8.634812e-05

Joint ci ratio: 2.454692e-01	ci left: 7.609595e-05	ci right 9.769817e-05	k: 254	n:2940000
Cons ci ratio: 9.988324e-03	ci left: 4.953228e-02	ci right 5.002983e-02	k: 146355	n:2940000
KS ci ratio: 2.355188e-01	ci left: 8.312828e-05	ci right 1.056310e-04	k: 276	n:2940000
COL6A6   2940000 perm   4142 sec   (710 perm/sec)   p_kst 9.387755e-05   p_cons 4.978061e-02   p_joint 8.639456e-05

Joint ci ratio: 2.445122e-01	ci left: 7.647435e-05	ci right 9.808649e-05	k: 256	n:2950000
Cons ci ratio: 9.971516e-03	ci left: 4.953141e-02	ci right 5.002812e-02	k: 146849	n:2950000
KS ci ratio: 2.350949e-01	ci left: 8.316549e-05	ci right 1.056318e-04	k: 277	n:2950000
COL6A6   2950000 perm   4168 sec   (708 perm/sec)   p_kst 9.389831e-05   p_cons 4.977932e-02   p_joint 8.677966e-05

Joint ci ratio: 2.445122e-01	ci left: 7.621599e-05	ci right 9.775512e-05	k: 256	n:2960000
Cons ci ratio: 9.955006e-03	ci left: 4.952853e-02	ci right 5.002438e-02	k: 147337	n:2960000
KS ci ratio: 2.350949e-01	ci left: 8.288453e-05	ci right 1.052750e-04	k: 277	n:2960000
COL6A6   2960000 perm   4193 sec   (706 perm/sec)   p_kst 9.358108e-05   p_cons 4.977601e-02   p_joint 8.648649e-05

Joint ci ratio: 2.435663e-01	ci left: 7.659159e-05	ci right 9.814047e-05	k: 258	n:2970000
Cons ci ratio: 9.938260e-03	ci left: 4.952869e-02	ci right 5.002370e-02	k: 147834	n:2970000
KS ci ratio: 2.346732e-01	ci left: 8.292234e-05	ci right 1.052770e-04	k: 278	n:2970000
COL6A6   2970000 perm   4219 sec   (704 perm/sec)   p_kst 9.360269e-05   p_cons 4.977576e-02   p_joint 8.686869e-05

Joint ci ratio: 2.440379e-01	ci left: 7.601950e-05	ci right 9.745512e-05	k: 257	n:2980000
Cons ci ratio: 9.921281e-03	ci left: 4.953186e-02	ci right 5.002606e-02	k: 148340	n:2980000
KS ci ratio: 2.338365e-01	ci left: 8.327584e-05	ci right 1.056342e-04	k: 280	n:2980000
COL6A6   2980000 perm   4244 sec   (702 perm/sec)   p_kst 9.395973e-05   p_cons 4.977852e-02   p_joint 8.624161e-05

Joint ci ratio: 2.440380e-01	ci left: 7.576525e-05	ci right 9.712918e-05	k: 257	n:2990000
Cons ci ratio: 9.905159e-03	ci left: 4.952768e-02	ci right 5.002102e-02	k: 148824	n:2990000
KS ci ratio: 2.330087e-01	ci left: 8.362711e-05	ci right 1.059888e-04	k: 282	n:2990000
COL6A6   2990000 perm   4270 sec   (700 perm/sec)   p_kst 9.431438e-05   p_cons 4.977391e-02   p_joint 8.595318e-05

Joint ci ratio: 2.440380e-01	ci left: 7.551270e-05	ci right 9.680542e-05	k: 257	n:3000000
Cons ci ratio: 9.888244e-03	ci left: 4.953183e-02	ci right 5.002437e-02	k: 149333	n:3000000
KS ci ratio: 2.330088e-01	ci left: 8.334835e-05	ci right 1.056355e-04	k: 282	n:3000000
COL6A6   3000000 perm   4295 sec   (698 perm/sec)   p_kst 9.400000e-05   p_cons 4.977767e-02   p_joint 8.566667e-05

Joint ci ratio: 2.430975e-01	ci left: 7.588573e-05	ci right 9.718873e-05	k: 259	n:3010000
Cons ci ratio: 9.872179e-03	ci left: 4.952867e-02	ci right 5.002037e-02	k: 149820	n:3010000
KS ci ratio: 2.325982e-01	ci left: 8.338429e-05	ci right 1.056361e-04	k: 283	n:3010000
COL6A6   3010000 perm   4321 sec   (697 perm/sec)   p_kst 9.401993e-05   p_cons 4.977409e-02   p_joint 8.604651e-05

Joint ci ratio: 2.426314e-01	ci left: 7.594543e-05	ci right 9.721815e-05	k: 260	n:3020000
Cons ci ratio: 9.855984e-03	ci left: 4.952751e-02	ci right 5.001839e-02	k: 150313	n:3020000
KS ci ratio: 2.325982e-01	ci left: 8.310818e-05	ci right 1.052863e-04	k: 283	n:3020000
COL6A6   3020000 perm   4347 sec   (695 perm/sec)   p_kst 9.370861e-05   p_cons 4.977252e-02   p_joint 8.609272e-05

Joint ci ratio: 2.412488e-01	ci left: 7.662487e-05	ci right 9.794730e-05	k: 263	n:3030000
Cons ci ratio: 9.838256e-03	ci left: 4.954183e-02	ci right 5.003197e-02	k: 150853	n:3030000
KS ci ratio: 2.317835e-01	ci left: 8.345557e-05	ci right 1.056373e-04	k: 285	n:3030000
COL6A6   3030000 perm   4373 sec   (693 perm/sec)   p_kst 9.405941e-05   p_cons 4.978647e-02   p_joint 8.679868e-05

Joint ci ratio: 2.412488e-01	ci left: 7.637281e-05	ci right 9.762510e-05	k: 263	n:3040000
Cons ci ratio: 9.822296e-03	ci left: 4.953998e-02	ci right 5.002930e-02	k: 151344	n:3040000
KS ci ratio: 2.317835e-01	ci left: 8.318105e-05	ci right 1.052898e-04	k: 285	n:3040000
COL6A6   3040000 perm   4398 sec   (691 perm/sec)   p_kst 9.375000e-05   p_cons 4.978421e-02   p_joint 8.651316e-05

Joint ci ratio: 2.412488e-01	ci left: 7.612241e-05	ci right 9.730502e-05	k: 263	n:3050000
Cons ci ratio: 9.805598e-03	ci left: 4.954599e-02	ci right 5.003453e-02	k: 151859	n:3050000
KS ci ratio: 2.317836e-01	ci left: 8.290832e-05	ci right 1.049446e-04	k: 285	n:3050000
COL6A6   3050000 perm   4424 sec   (689 perm/sec)   p_kst 9.344262e-05   p_cons 4.978984e-02   p_joint 8.622951e-05

Joint ci ratio: 2.412489e-01	ci left: 7.587364e-05	ci right 9.698703e-05	k: 263	n:3060000
Cons ci ratio: 9.789593e-03	ci left: 4.954610e-02	ci right 5.003384e-02	k: 152356	n:3060000
KS ci ratio: 2.317836e-01	ci left: 8.263738e-05	ci right 1.046016e-04	k: 285	n:3060000
COL6A6   3060000 perm   4449 sec   (688 perm/sec)   p_kst 9.313725e-05   p_cons 4.978954e-02   p_joint 8.594771e-05

Joint ci ratio: 2.412489e-01	ci left: 7.562650e-05	ci right 9.667112e-05	k: 263	n:3070000
Cons ci ratio: 9.772859e-03	ci left: 4.955400e-02	ci right 5.004098e-02	k: 152877	n:3070000
KS ci ratio: 2.309773e-01	ci left: 8.298191e-05	ci right 1.049500e-04	k: 287	n:3070000
COL6A6   3070000 perm   4475 sec   (686 perm/sec)   p_kst 9.348534e-05   p_cons 4.979707e-02   p_joint 8.566775e-05

Joint ci ratio: 2.412489e-01	ci left: 7.538095e-05	ci right 9.635725e-05	k: 263	n:3080000
Cons ci ratio: 9.756779e-03	ci left: 4.955635e-02	ci right 5.004255e-02	k: 153381	n:3080000
KS ci ratio: 2.301795e-01	ci left: 8.332433e-05	ci right 1.052961e-04	k: 289	n:3080000
COL6A6   3080000 perm   4502 sec   (684 perm/sec)   p_kst 9.383117e-05   p_cons 4.979903e-02   p_joint 8.538961e-05

Joint ci ratio: 2.445127e-01	ci left: 7.300947e-05	ci right 9.364247e-05	k: 256	n:3090000
Cons ci ratio: 9.740679e-03	ci left: 4.955965e-02	ci right 5.004507e-02	k: 153888	n:3090000
KS ci ratio: 2.286081e-01	ci left: 8.427479e-05	ci right 1.063241e-04	k: 293	n:3090000
COL6A6   3090000 perm   4528 sec   (682 perm/sec)   p_kst 9.482201e-05   p_cons 4.980194e-02   p_joint 8.284790e-05

Joint ci ratio: 2.435667e-01	ci left: 7.337967e-05	ci right 9.402493e-05	k: 258	n:3100000
Cons ci ratio: 9.724956e-03	ci left: 4.956004e-02	ci right 5.004467e-02	k: 154386	n:3100000
KS ci ratio: 2.274505e-01	ci left: 8.491541e-05	ci right 1.070040e-04	k: 296	n:3100000
COL6A6   3100000 perm   4555 sec   (681 perm/sec)   p_kst 9.548387e-05   p_cons 4.980194e-02   p_joint 8.322581e-05

Joint ci ratio: 2.435668e-01	ci left: 7.314372e-05	ci right 9.372260e-05	k: 258	n:3110000
Cons ci ratio: 9.708847e-03	ci left: 4.956491e-02	ci right 5.004879e-02	k: 154898	n:3110000
KS ci ratio: 2.270686e-01	ci left: 8.494561e-05	ci right 1.069998e-04	k: 297	n:3110000
COL6A6   3110000 perm   4582 sec   (679 perm/sec)   p_kst 9.549839e-05   p_cons 4.980643e-02   p_joint 8.295820e-05

Joint ci ratio: 2.421682e-01	ci left: 7.381232e-05	ci right 9.444214e-05	k: 261	n:3120000
Cons ci ratio: 9.693245e-03	ci left: 4.956560e-02	ci right 5.004870e-02	k: 155397	n:3120000
KS ci ratio: 2.266886e-01	ci left: 8.497564e-05	ci right 1.069955e-04	k: 298	n:3120000
COL6A6   3120000 perm   4608 sec   (677 perm/sec)   p_kst 9.551282e-05   p_cons 4.980673e-02   p_joint 8.365385e-05

Joint ci ratio: 2.417074e-01	ci left: 7.387662e-05	ci right 9.447923e-05	k: 262	n:3130000
Cons ci ratio: 9.676510e-03	ci left: 4.957807e-02	ci right 5.006046e-02	k: 155933	n:3130000
KS ci ratio: 2.266886e-01	ci left: 8.470415e-05	ci right 1.066537e-04	k: 298	n:3130000
COL6A6   3130000 perm   4635 sec   (675 perm/sec)   p_kst 9.520767e-05   p_cons 4.981885e-02   p_joint 8.370607e-05

Joint ci ratio: 1.713953e-01	ci left: 1.522860e-04	ci right 1.811331e-04	k: 522	n:3140000
Cons ci ratio: 9.661745e-03	ci left: 4.957204e-02	ci right 5.005363e-02	k: 156411	n:3140000
KS ci ratio: 2.263105e-01	ci left: 8.473480e-05	ci right 1.066505e-04	k: 299	n:3140000
COL6A6   3140000 perm   4661 sec   (674 perm/sec)   p_kst 9.522293e-05   p_cons 4.981242e-02   p_joint 1.662420e-04

Joint ci ratio: 1.717241e-01	ci left: 1.511948e-04	ci right 1.798960e-04	k: 520	n:3150000
Cons ci ratio: 9.645236e-03	ci left: 4.958379e-02	ci right 5.006466e-02	k: 156945	n:3150000
KS ci ratio: 2.263105e-01	ci left: 8.446580e-05	ci right 1.063120e-04	k: 299	n:3150000
COL6A6   3150000 perm   4689 sec   (672 perm/sec)   p_kst 9.492063e-05   p_cons 4.982381e-02   p_joint 1.650794e-04

Joint ci ratio: 1.717241e-01	ci left: 1.507164e-04	ci right 1.793267e-04	k: 520	n:3160000
Cons ci ratio: 9.629745e-03	ci left: 4.958630e-02	ci right 5.006642e-02	k: 157450	n:3160000
KS ci ratio: 2.259342e-01	ci left: 8.449703e-05	ci right 1.063099e-04	k: 300	n:3160000
COL6A6   3160000 perm   4716 sec   (670 perm/sec)   p_kst 9.493671e-05   p_cons 4.982595e-02   p_joint 1.645570e-04

Joint ci ratio: 1.713955e-01	ci left: 1.508447e-04	ci right 1.794190e-04	k: 522	n:3170000
Cons ci ratio: 9.615001e-03	ci left: 4.958219e-02	ci right 5.006153e-02	k: 157934	n:3170000
KS ci ratio: 2.251873e-01	ci left: 8.482575e-05	ci right 1.066410e-04	k: 302	n:3170000
COL6A6   3170000 perm   4744 sec   (668 perm/sec)   p_kst 9.526814e-05   p_cons 4.982145e-02   p_joint 1.646688e-04

Joint ci ratio: 1.710687e-01	ci left: 1.509724e-04	ci right 1.795106e-04	k: 524	n:3180000
Cons ci ratio: 9.599879e-03	ci left: 4.958250e-02	ci right 5.006109e-02	k: 158432	n:3180000
KS ci ratio: 2.248166e-01	ci left: 8.485575e-05	ci right 1.066378e-04	k: 303	n:3180000
COL6A6   3180000 perm   4771 sec   (666 perm/sec)   p_kst 9.528302e-05   p_cons 4.982138e-02   p_joint 1.647799e-04

Joint ci ratio: 1.709060e-01	ci left: 1.507992e-04	ci right 1.792748e-04	k: 525	n:3190000
Cons ci ratio: 9.585493e-03	ci left: 4.957624e-02	ci right 5.005405e-02	k: 158909	n:3190000
KS ci ratio: 2.248167e-01	ci left: 8.458974e-05	ci right 1.063035e-04	k: 303	n:3190000
COL6A6   3190000 perm   4799 sec   (665 perm/sec)   p_kst 9.498433e-05   p_cons 4.981473e-02   p_joint 1.645768e-04

Joint ci ratio: 1.705820e-01	ci left: 1.509262e-04	ci right 1.793662e-04	k: 527	n:3200000
Cons ci ratio: 9.570067e-03	ci left: 4.958093e-02	ci right 5.005801e-02	k: 159421	n:3200000
KS ci ratio: 2.240807e-01	ci left: 8.491526e-05	ci right 1.066314e-04	k: 305	n:3200000
COL6A6   3200000 perm   4826 sec   (663 perm/sec)   p_kst 9.531250e-05   p_cons 4.981906e-02   p_joint 1.646875e-04

Joint ci ratio: 1.705820e-01	ci left: 1.504560e-04	ci right 1.788074e-04	k: 527	n:3210000
Cons ci ratio: 9.555375e-03	ci left: 4.957907e-02	ci right 5.005539e-02	k: 159912	n:3210000
KS ci ratio: 2.240808e-01	ci left: 8.465073e-05	ci right 1.062992e-04	k: 305	n:3210000
COL6A6   3210000 perm   4853 sec   (661 perm/sec)   p_kst 9.501558e-05   p_cons 4.981682e-02   p_joint 1.641745e-04

Joint ci ratio: 1.699395e-01	ci left: 1.511781e-04	ci right 1.795473e-04	k: 531	n:3220000
Cons ci ratio: 9.540030e-03	ci left: 4.958434e-02	ci right 5.005995e-02	k: 160426	n:3220000
KS ci ratio: 2.226303e-01	ci left: 8.556058e-05	ci right 1.072807e-04	k: 309	n:3220000
COL6A6   3220000 perm   4882 sec   (660 perm/sec)   p_kst 9.596273e-05   p_cons 4.982174e-02   p_joint 1.649068e-04

Joint ci ratio: 1.694623e-01	ci left: 1.515994e-04	ci right 1.799596e-04	k: 534	n:3230000
Cons ci ratio: 9.524604e-03	ci left: 4.959113e-02	ci right 5.006603e-02	k: 160945	n:3230000
KS ci ratio: 2.222721e-01	ci left: 8.558804e-05	ci right 1.072754e-04	k: 310	n:3230000
COL6A6   3230000 perm   4910 sec   (658 perm/sec)   p_kst 9.597523e-05   p_cons 4.982817e-02   p_joint 1.653251e-04

Joint ci ratio: 1.688323e-01	ci left: 1.523138e-04	ci right 1.806909e-04	k: 538	n:3240000
Cons ci ratio: 9.510337e-03	ci left: 4.958710e-02	ci right 5.006124e-02	k: 161429	n:3240000
KS ci ratio: 2.219156e-01	ci left: 8.561535e-05	ci right 1.072701e-04	k: 311	n:3240000
COL6A6   3240000 perm   4938 sec   (656 perm/sec)   p_kst 9.598765e-05   p_cons 4.982377e-02   p_joint 1.660494e-04

Joint ci ratio: 1.688323e-01	ci left: 1.518451e-04	ci right 1.801350e-04	k: 538	n:3250000
Cons ci ratio: 9.495640e-03	ci left: 4.958800e-02	ci right 5.006142e-02	k: 161929	n:3250000
KS ci ratio: 2.215608e-01	ci left: 8.564252e-05	ci right 1.072648e-04	k: 312	n:3250000
COL6A6   3250000 perm   4966 sec   (655 perm/sec)   p_kst 9.600000e-05   p_cons 4.982431e-02   p_joint 1.655385e-04

Joint ci ratio: 1.686759e-01	ci left: 1.516732e-04	ci right 1.799021e-04	k: 539	n:3260000
Cons ci ratio: 9.480427e-03	ci left: 4.959472e-02	ci right 5.006743e-02	k: 162448	n:3260000
KS ci ratio: 2.212077e-01	ci left: 8.566955e-05	ci right 1.072595e-04	k: 313	n:3260000
COL6A6   3260000 perm   4993 sec   (653 perm/sec)   p_kst 9.601227e-05   p_cons 4.983067e-02   p_joint 1.653374e-04

Joint ci ratio: 1.685200e-01	ci left: 1.515022e-04	ci right 1.796706e-04	k: 540	n:3270000
Cons ci ratio: 9.465991e-03	ci left: 4.959437e-02	ci right 5.006636e-02	k: 162944	n:3270000
KS ci ratio: 2.205065e-01	ci left: 8.598536e-05	ci right 1.075769e-04	k: 315	n:3270000
COL6A6   3270000 perm   5021 sec   (651 perm/sec)   p_kst 9.633028e-05   p_cons 4.982997e-02   p_joint 1.651376e-04

Joint ci ratio: 1.682094e-01	ci left: 1.516244e-04	ci right 1.797583e-04	k: 542	n:3280000
Cons ci ratio: 9.451742e-03	ci left: 4.959282e-02	ci right 5.006408e-02	k: 163436	n:3280000
KS ci ratio: 2.201585e-01	ci left: 8.601126e-05	ci right 1.075706e-04	k: 316	n:3280000
COL6A6   3280000 perm   5048 sec   (650 perm/sec)   p_kst 9.634146e-05   p_cons 4.982805e-02   p_joint 1.652439e-04

Joint ci ratio: 1.710691e-01	ci left: 1.459246e-04	ci right 1.735088e-04	k: 524	n:3290000
Cons ci ratio: 9.437012e-03	ci left: 4.959673e-02	ci right 5.006729e-02	k: 163946	n:3290000
KS ci ratio: 2.201585e-01	ci left: 8.574983e-05	ci right 1.072436e-04	k: 316	n:3290000
COL6A6   3290000 perm   5076 sec   (648 perm/sec)   p_kst 9.604863e-05   p_cons 4.983161e-02   p_joint 1.592705e-04

Joint ci ratio: 1.705824e-01	ci left: 1.463527e-04	ci right 1.739309e-04	k: 527	n:3300000
Cons ci ratio: 9.423044e-03	ci left: 4.959366e-02	ci right 5.006349e-02	k: 164433	n:3300000
KS ci ratio: 2.198121e-01	ci left: 8.577631e-05	ci right 1.072383e-04	k: 317	n:3300000
COL6A6   3300000 perm   5103 sec   (647 perm/sec)   p_kst 9.606061e-05   p_cons 4.982818e-02   p_joint 1.596970e-04

Joint ci ratio: 1.700998e-01	ci left: 1.467782e-04	ci right 1.743504e-04	k: 530	n:3310000
Cons ci ratio: 9.408837e-03	ci left: 4.959363e-02	ci right 5.006275e-02	k: 164930	n:3310000
KS ci ratio: 2.194673e-01	ci left: 8.580267e-05	ci right 1.072331e-04	k: 318	n:3310000
COL6A6   3310000 perm   5130 sec   (645 perm/sec)   p_kst 9.607251e-05   p_cons 4.982779e-02   p_joint 1.601208e-04

Joint ci ratio: 1.700999e-01	ci left: 1.463361e-04	ci right 1.738252e-04	k: 530	n:3320000
Cons ci ratio: 9.394486e-03	ci left: 4.959570e-02	ci right 5.006412e-02	k: 165434	n:3320000
KS ci ratio: 2.187825e-01	ci left: 8.611358e-05	ci right 1.075455e-04	k: 320	n:3320000
COL6A6   3320000 perm   5158 sec   (644 perm/sec)   p_kst 9.638554e-05   p_cons 4.982952e-02   p_joint 1.596386e-04

Joint ci ratio: 1.699400e-01	ci left: 1.461842e-04	ci right 1.736163e-04	k: 531	n:3330000
Cons ci ratio: 9.380289e-03	ci left: 4.959686e-02	ci right 5.006458e-02	k: 165935	n:3330000
KS ci ratio: 2.184425e-01	ci left: 8.613883e-05	ci right 1.075392e-04	k: 321	n:3330000
COL6A6   3330000 perm   5186 sec   (642 perm/sec)   p_kst 9.639640e-05   p_cons 4.983033e-02   p_joint 1.594595e-04

Joint ci ratio: 1.697805e-01	ci left: 1.460332e-04	ci right 1.734086e-04	k: 532	n:3340000
Cons ci ratio: 9.366423e-03	ci left: 4.959533e-02	ci right 5.006234e-02	k: 166427	n:3340000
KS ci ratio: 2.184425e-01	ci left: 8.588093e-05	ci right 1.072173e-04	k: 321	n:3340000
COL6A6   3340000 perm   5214 sec   (641 perm/sec)   p_kst 9.610778e-05   p_cons 4.982844e-02   p_joint 1.592814e-04

Joint ci ratio: 1.705826e-01	ci left: 1.441683e-04	ci right 1.713349e-04	k: 527	n:3350000
Cons ci ratio: 9.353001e-03	ci left: 4.958993e-02	ci right 5.005622e-02	k: 166906	n:3350000
KS ci ratio: 2.184425e-01	ci left: 8.562457e-05	ci right 1.068972e-04	k: 321	n:3350000
COL6A6   3350000 perm   5242 sec   (639 perm/sec)   p_kst 9.582090e-05   p_cons 4.982269e-02   p_joint 1.573134e-04

Joint ci ratio: 1.704213e-01	ci left: 1.440241e-04	ci right 1.711353e-04	k: 528	n:3360000
Cons ci ratio: 9.338551e-03	ci left: 4.959556e-02	ci right 5.006117e-02	k: 167422	n:3360000
KS ci ratio: 2.184426e-01	ci left: 8.536973e-05	ci right 1.065791e-04	k: 321	n:3360000
COL6A6   3360000 perm   5270 sec   (638 perm/sec)   p_kst 9.553571e-05   p_cons 4.982798e-02   p_joint 1.571429e-04

Joint ci ratio: 1.701001e-01	ci left: 1.441649e-04	ci right 1.712462e-04	k: 530	n:3370000
Cons ci ratio: 9.324752e-03	ci left: 4.959523e-02	ci right 5.006015e-02	k: 167918	n:3370000
KS ci ratio: 2.174320e-01	ci left: 8.595803e-05	ci right 1.072015e-04	k: 324	n:3370000
COL6A6   3370000 perm   5299 sec   (636 perm/sec)   p_kst 9.614243e-05   p_cons 4.982730e-02   p_joint 1.572700e-04

Joint ci ratio: 1.699402e-01	ci left: 1.440217e-04	ci right 1.710480e-04	k: 531	n:3380000
Cons ci ratio: 9.311189e-03	ci left: 4.959313e-02	ci right 5.005735e-02	k: 168408	n:3380000
KS ci ratio: 2.170982e-01	ci left: 8.598348e-05	ci right 1.071963e-04	k: 325	n:3380000
COL6A6   3380000 perm   5327 sec   (634 perm/sec)   p_kst 9.615385e-05   p_cons 4.982485e-02   p_joint 1.571006e-04

Joint ci ratio: 1.699402e-01	ci left: 1.435968e-04	ci right 1.705435e-04	k: 531	n:3390000
Cons ci ratio: 9.298756e-03	ci left: 4.958015e-02	ci right 5.004363e-02	k: 168861	n:3390000
KS ci ratio: 2.170982e-01	ci left: 8.572984e-05	ci right 1.068801e-04	k: 325	n:3390000
COL6A6   3390000 perm   5355 sec   (633 perm/sec)   p_kst 9.587021e-05   p_cons 4.981150e-02   p_joint 1.566372e-04

Joint ci ratio: 1.697807e-01	ci left: 1.434561e-04	ci right 1.703485e-04	k: 532	n:3400000
Cons ci ratio: 9.285306e-03	ci left: 4.957811e-02	ci right 5.004089e-02	k: 169351	n:3400000
KS ci ratio: 2.170983e-01	ci left: 8.547769e-05	ci right 1.065657e-04	k: 325	n:3400000
COL6A6   3400000 perm   5384 sec   (632 perm/sec)   p_kst 9.558824e-05   p_cons 4.980912e-02   p_joint 1.564706e-04

Joint ci ratio: 1.697808e-01	ci left: 1.430354e-04	ci right 1.698489e-04	k: 532	n:3410000
Cons ci ratio: 9.270133e-03	ci left: 4.959422e-02	ci right 5.005639e-02	k: 169903	n:3410000
KS ci ratio: 2.170983e-01	ci left: 8.522702e-05	ci right 1.062532e-04	k: 325	n:3410000
COL6A6   3410000 perm   5412 sec   (630 perm/sec)   p_kst 9.530792e-05   p_cons 4.982493e-02   p_joint 1.560117e-04

Joint ci ratio: 1.697808e-01	ci left: 1.426172e-04	ci right 1.693523e-04	k: 532	n:3420000
Cons ci ratio: 9.257178e-03	ci left: 4.958836e-02	ci right 5.004983e-02	k: 170380	n:3420000
KS ci ratio: 2.170983e-01	ci left: 8.497782e-05	ci right 1.059425e-04	k: 325	n:3420000
COL6A6   3420000 perm   5440 sec   (629 perm/sec)   p_kst 9.502924e-05   p_cons 4.981871e-02   p_joint 1.555556e-04

Joint ci ratio: 1.694631e-01	ci left: 1.427597e-04	ci right 1.694664e-04	k: 534	n:3430000
Cons ci ratio: 9.244504e-03	ci left: 4.958021e-02	ci right 5.004096e-02	k: 170849	n:3430000
KS ci ratio: 2.161062e-01	ci left: 8.555726e-05	ci right 1.065557e-04	k: 328	n:3430000
COL6A6   3430000 perm   5468 sec   (627 perm/sec)   p_kst 9.562682e-05   p_cons 4.981020e-02   p_joint 1.556851e-04

Joint ci ratio: 1.705830e-01	ci left: 1.403964e-04	ci right 1.668524e-04	k: 527	n:3440000
Cons ci ratio: 9.231118e-03	ci left: 4.957993e-02	ci right 5.004001e-02	k: 171345	n:3440000
KS ci ratio: 2.161062e-01	ci left: 8.530855e-05	ci right 1.062459e-04	k: 328	n:3440000
COL6A6   3440000 perm   5497 sec   (626 perm/sec)   p_kst 9.534884e-05   p_cons 4.980959e-02   p_joint 1.531977e-04

Joint ci ratio: 1.697809e-01	ci left: 1.413770e-04	ci right 1.678797e-04	k: 532	n:3450000
Cons ci ratio: 9.217478e-03	ci left: 4.958284e-02	ci right 5.004226e-02	k: 171852	n:3450000
KS ci ratio: 2.148043e-01	ci left: 8.615814e-05	ci right 1.071599e-04	k: 332	n:3450000
COL6A6   3450000 perm   5525 sec   (624 perm/sec)   p_kst 9.623188e-05   p_cons 4.981217e-02   p_joint 1.542029e-04

Joint ci ratio: 1.693051e-01	ci left: 1.417987e-04	ci right 1.682983e-04	k: 535	n:3460000
Cons ci ratio: 9.205192e-03	ci left: 4.957246e-02	ci right 5.003118e-02	k: 172313	n:3460000
KS ci ratio: 2.141621e-01	ci left: 8.645612e-05	ci right 1.074592e-04	k: 334	n:3460000
COL6A6   3460000 perm   5553 sec   (623 perm/sec)   p_kst 9.653179e-05   p_cons 4.980145e-02   p_joint 1.546243e-04

Joint ci ratio: 1.691474e-01	ci left: 1.416660e-04	ci right 1.681137e-04	k: 536	n:3470000
Cons ci ratio: 9.192843e-03	ci left: 4.956330e-02	ci right 5.002131e-02	k: 172778	n:3470000
KS ci ratio: 2.141621e-01	ci left: 8.620696e-05	ci right 1.071495e-04	k: 334	n:3470000
COL6A6   3470000 perm   5582 sec   (622 perm/sec)   p_kst 9.625360e-05   p_cons 4.979193e-02   p_joint 1.544669e-04

Joint ci ratio: 1.688333e-01	ci left: 1.418093e-04	ci right 1.682296e-04	k: 538	n:3480000
Cons ci ratio: 9.179483e-03	ci left: 4.956509e-02	ci right 5.002244e-02	k: 173281	n:3480000
KS ci ratio: 2.138432e-01	ci left: 8.623120e-05	ci right 1.071443e-04	k: 335	n:3480000
COL6A6   3480000 perm   5612 sec   (620 perm/sec)   p_kst 9.626437e-05   p_cons 4.979339e-02   p_joint 1.545977e-04

Joint ci ratio: 1.685209e-01	ci left: 1.419519e-04	ci right 1.683448e-04	k: 540	n:3490000
Cons ci ratio: 9.166349e-03	ci left: 4.956515e-02	ci right 5.002185e-02	k: 173778	n:3490000
KS ci ratio: 2.132095e-01	ci left: 8.652654e-05	ci right 1.074410e-04	k: 337	n:3490000
COL6A6   3490000 perm   5641 sec   (619 perm/sec)   p_kst 9.656160e-05   p_cons 4.979312e-02   p_joint 1.547278e-04

Joint ci ratio: 1.683654e-01	ci left: 1.418200e-04	ci right 1.681615e-04	k: 541	n:3500000
Cons ci ratio: 9.152718e-03	ci left: 4.957091e-02	ci right 5.002698e-02	k: 174295	n:3500000
KS ci ratio: 2.128948e-01	ci left: 8.654979e-05	ci right 1.074350e-04	k: 338	n:3500000
COL6A6   3500000 perm   5670 sec   (617 perm/sec)   p_kst 9.657143e-05   p_cons 4.979857e-02   p_joint 1.545714e-04

Joint ci ratio: 1.679013e-01	ci left: 1.422347e-04	ci right 1.685731e-04	k: 544	n:3510000
Cons ci ratio: 9.139780e-03	ci left: 4.957010e-02	ci right 5.002552e-02	k: 174789	n:3510000
KS ci ratio: 2.122696e-01	ci left: 8.684268e-05	ci right 1.077290e-04	k: 340	n:3510000
COL6A6   3510000 perm   5698 sec   (616 perm/sec)   p_kst 9.686610e-05   p_cons 4.979744e-02   p_joint 1.549858e-04

Joint ci ratio: 1.671363e-01	ci left: 1.431915e-04	ci right 1.695741e-04	k: 549	n:3520000
Cons ci ratio: 9.126596e-03	ci left: 4.957241e-02	ci right 5.002719e-02	k: 175294	n:3520000
KS ci ratio: 2.113419e-01	ci left: 8.740304e-05	ci right 1.083203e-04	k: 343	n:3520000
COL6A6   3520000 perm   5727 sec   (615 perm/sec)   p_kst 9.744318e-05   p_cons 4.979943e-02   p_joint 1.559659e-04

Joint ci ratio: 1.669846e-01	ci left: 1.430573e-04	ci right 1.693889e-04	k: 550	n:3530000
Cons ci ratio: 9.113578e-03	ci left: 4.957359e-02	ci right 5.002772e-02	k: 175795	n:3530000
KS ci ratio: 2.104263e-01	ci left: 8.796042e-05	ci right 1.089081e-04	k: 346	n:3530000
COL6A6   3530000 perm   5756 sec   (613 perm/sec)   p_kst 9.801700e-05   p_cons 4.980028e-02   p_joint 1.558074e-04

Joint ci ratio: 1.668332e-01	ci left: 1.429239e-04	ci right 1.692046e-04	k: 551	n:3540000
Cons ci ratio: 9.100642e-03	ci left: 4.957447e-02	ci right 5.002796e-02	k: 176295	n:3540000
KS ci ratio: 2.104263e-01	ci left: 8.771194e-05	ci right 1.086005e-04	k: 346	n:3540000
COL6A6   3540000 perm   5785 sec   (612 perm/sec)   p_kst 9.774011e-05   p_cons 4.980085e-02   p_joint 1.556497e-04

Joint ci ratio: 1.669846e-01	ci left: 1.422513e-04	ci right 1.684346e-04	k: 550	n:3550000
Cons ci ratio: 9.087356e-03	ci left: 4.957956e-02	ci right 5.003244e-02	k: 176810	n:3550000
KS ci ratio: 2.104263e-01	ci left: 8.746486e-05	ci right 1.082946e-04	k: 346	n:3550000
COL6A6   3550000 perm   5813 sec   (611 perm/sec)   p_kst 9.746479e-05   p_cons 4.980563e-02   p_joint 1.549296e-04

Joint ci ratio: 1.665319e-01	ci left: 1.426593e-04	ci right 1.688393e-04	k: 553	n:3560000
Cons ci ratio: 9.074828e-03	ci left: 4.957734e-02	ci right 5.002957e-02	k: 177299	n:3560000
KS ci ratio: 2.101238e-01	ci left: 8.748528e-05	ci right 1.082860e-04	k: 347	n:3560000
COL6A6   3560000 perm   5842 sec   (609 perm/sec)   p_kst 9.747191e-05   p_cons 4.980309e-02   p_joint 1.553371e-04

Joint ci ratio: 1.663818e-01	ci left: 1.425281e-04	ci right 1.686581e-04	k: 554	n:3570000
Cons ci ratio: 9.062298e-03	ci left: 4.957569e-02	ci right 5.002728e-02	k: 177790	n:3570000
KS ci ratio: 2.101238e-01	ci left: 8.724023e-05	ci right 1.079827e-04	k: 347	n:3570000
COL6A6   3570000 perm   5871 sec   (608 perm/sec)   p_kst 9.719888e-05   p_cons 4.980112e-02   p_joint 1.551821e-04

Joint ci ratio: 1.663818e-01	ci left: 1.421300e-04	ci right 1.681870e-04	k: 554	n:3580000
Cons ci ratio: 9.050193e-03	ci left: 4.957015e-02	ci right 5.002108e-02	k: 178267	n:3580000
KS ci ratio: 2.101238e-01	ci left: 8.699654e-05	ci right 1.076811e-04	k: 347	n:3580000
COL6A6   3580000 perm   5899 sec   (607 perm/sec)   p_kst 9.692737e-05   p_cons 4.979525e-02   p_joint 1.547486e-04

Joint ci ratio: 1.659339e-01	ci left: 1.425350e-04	ci right 1.685889e-04	k: 557	n:3590000
Cons ci ratio: 9.037605e-03	ci left: 4.957020e-02	ci right 5.002050e-02	k: 178764	n:3590000
KS ci ratio: 2.098226e-01	ci left: 8.701811e-05	ci right 1.076743e-04	k: 348	n:3590000
COL6A6   3590000 perm   5929 sec   (605 perm/sec)   p_kst 9.693593e-05   p_cons 4.979499e-02   p_joint 1.551532e-04

Joint ci ratio: 1.654896e-01	ci left: 1.429378e-04	ci right 1.689884e-04	k: 560	n:3600000
Cons ci ratio: 9.024407e-03	ci left: 4.957718e-02	ci right 5.002688e-02	k: 179286	n:3600000
KS ci ratio: 2.095226e-01	ci left: 8.703959e-05	ci right 1.076676e-04	k: 349	n:3600000
COL6A6   3600000 perm   5959 sec   (604 perm/sec)   p_kst 9.694444e-05   p_cons 4.980167e-02   p_joint 1.555556e-04

Joint ci ratio: 1.653423e-01	ci left: 1.428074e-04	ci right 1.688088e-04	k: 561	n:3610000
Cons ci ratio: 9.011847e-03	ci left: 4.957804e-02	ci right 5.002712e-02	k: 179786	n:3610000
KS ci ratio: 2.095226e-01	ci left: 8.679848e-05	ci right 1.073693e-04	k: 349	n:3610000
COL6A6   3610000 perm   5989 sec   (603 perm/sec)   p_kst 9.667590e-05   p_cons 4.980222e-02   p_joint 1.554017e-04

Joint ci ratio: 1.651954e-01	ci left: 1.426778e-04	ci right 1.686301e-04	k: 562	n:3620000
Cons ci ratio: 8.999681e-03	ci left: 4.957531e-02	ci right 5.002375e-02	k: 180273	n:3620000
KS ci ratio: 2.095227e-01	ci left: 8.655870e-05	ci right 1.070727e-04	k: 349	n:3620000
COL6A6   3620000 perm   6019 sec   (601 perm/sec)   p_kst 9.640884e-05   p_cons 4.979917e-02   p_joint 1.552486e-04

Joint ci ratio: 1.651955e-01	ci left: 1.422847e-04	ci right 1.681656e-04	k: 562	n:3630000
Cons ci ratio: 8.985916e-03	ci left: 4.958991e-02	ci right 5.003780e-02	k: 180823	n:3630000
KS ci ratio: 2.095227e-01	ci left: 8.632025e-05	ci right 1.067778e-04	k: 349	n:3630000
COL6A6   3630000 perm   6048 sec   (600 perm/sec)   p_kst 9.614325e-05   p_cons 4.981350e-02   p_joint 1.548209e-04

Joint ci ratio: 1.694639e-01	ci left: 1.345235e-04	ci right 1.596895e-04	k: 534	n:3640000
Cons ci ratio: 8.973463e-03	ci left: 4.959128e-02	ci right 5.003856e-02	k: 181325	n:3640000
KS ci ratio: 2.089266e-01	ci left: 8.660377e-05	ci right 1.070626e-04	k: 351	n:3640000
COL6A6   3640000 perm   6079 sec   (599 perm/sec)   p_kst 9.642857e-05   p_cons 4.981456e-02   p_joint 1.467033e-04

Joint ci ratio: 1.691480e-01	ci left: 1.346797e-04	ci right 1.598232e-04	k: 536	n:3650000
Cons ci ratio: 8.961270e-03	ci left: 4.959045e-02	ci right 5.003711e-02	k: 181819	n:3650000
KS ci ratio: 2.083355e-01	ci left: 8.688582e-05	ci right 1.073458e-04	k: 353	n:3650000
COL6A6   3650000 perm   6108 sec   (598 perm/sec)   p_kst 9.671233e-05   p_cons 4.981342e-02   p_joint 1.468493e-04

Joint ci ratio: 1.688339e-01	ci left: 1.348351e-04	ci right 1.599560e-04	k: 538	n:3660000
Cons ci ratio: 8.949126e-03	ci left: 4.958963e-02	ci right 5.003567e-02	k: 182313	n:3660000
KS ci ratio: 2.077495e-01	ci left: 8.716641e-05	ci right 1.076274e-04	k: 355	n:3660000
COL6A6   3660000 perm   6138 sec   (596 perm/sec)   p_kst 9.699454e-05   p_cons 4.981230e-02   p_joint 1.469945e-04

Joint ci ratio: 1.680561e-01	ci left: 1.357726e-04	ci right 1.609400e-04	k: 543	n:3670000
Cons ci ratio: 8.937444e-03	ci left: 4.958446e-02	ci right 5.002987e-02	k: 182791	n:3670000
KS ci ratio: 2.071683e-01	ci left: 8.744555e-05	ci right 1.079074e-04	k: 357	n:3670000
COL6A6   3670000 perm   6168 sec   (595 perm/sec)   p_kst 9.727520e-05   p_cons 4.980681e-02   p_joint 1.479564e-04

Joint ci ratio: 1.680562e-01	ci left: 1.354037e-04	ci right 1.605026e-04	k: 543	n:3680000
Cons ci ratio: 8.925268e-03	ci left: 4.958502e-02	ci right 5.002982e-02	k: 183290	n:3680000
KS ci ratio: 2.071683e-01	ci left: 8.720792e-05	ci right 1.076141e-04	k: 357	n:3680000
COL6A6   3680000 perm   6198 sec   (594 perm/sec)   p_kst 9.701087e-05   p_cons 4.980707e-02   p_joint 1.475543e-04

Joint ci ratio: 1.675947e-01	ci left: 1.358156e-04	ci right 1.609148e-04	k: 546	n:3690000
Cons ci ratio: 8.912352e-03	ci left: 4.959395e-02	ci right 5.003819e-02	k: 183820	n:3690000
KS ci ratio: 2.068796e-01	ci left: 8.722854e-05	ci right 1.076075e-04	k: 358	n:3690000
COL6A6   3690000 perm   6227 sec   (593 perm/sec)   p_kst 9.701897e-05   p_cons 4.981572e-02   p_joint 1.479675e-04

Joint ci ratio: 1.671369e-01	ci left: 1.362254e-04	ci right 1.613246e-04	k: 549	n:3700000
Cons ci ratio: 8.901015e-03	ci left: 4.958666e-02	ci right 5.003026e-02	k: 184290	n:3700000
KS ci ratio: 2.068796e-01	ci left: 8.699279e-05	ci right 1.073167e-04	k: 358	n:3700000
COL6A6   3700000 perm   6257 sec   (591 perm/sec)   p_kst 9.675676e-05   p_cons 4.980811e-02   p_joint 1.483784e-04

Joint ci ratio: 1.671369e-01	ci left: 1.358582e-04	ci right 1.608898e-04	k: 549	n:3710000
Cons ci ratio: 8.889342e-03	ci left: 4.958344e-02	ci right 5.002643e-02	k: 184775	n:3710000
KS ci ratio: 2.068796e-01	ci left: 8.675830e-05	ci right 1.070274e-04	k: 358	n:3710000
COL6A6   3710000 perm   6288 sec   (590 perm/sec)   p_kst 9.649596e-05   p_cons 4.980458e-02   p_joint 1.479784e-04

Joint ci ratio: 1.671370e-01	ci left: 1.354930e-04	ci right 1.604573e-04	k: 549	n:3720000
Cons ci ratio: 8.877211e-03	ci left: 4.958560e-02	ci right 5.002800e-02	k: 185280	n:3720000
KS ci ratio: 2.068797e-01	ci left: 8.652508e-05	ci right 1.067397e-04	k: 358	n:3720000
COL6A6   3720000 perm   6318 sec   (589 perm/sec)   p_kst 9.623656e-05   p_cons 4.980645e-02   p_joint 1.475806e-04

Joint ci ratio: 1.686777e-01	ci left: 1.325614e-04	ci right 1.572336e-04	k: 539	n:3730000
Cons ci ratio: 8.865707e-03	ci left: 4.958160e-02	ci right 5.002339e-02	k: 185762	n:3730000
KS ci ratio: 2.065921e-01	ci left: 8.654733e-05	ci right 1.067355e-04	k: 359	n:3730000
COL6A6   3730000 perm   6349 sec   (588 perm/sec)   p_kst 9.624665e-05   p_cons 4.980214e-02   p_joint 1.445040e-04

Joint ci ratio: 1.686777e-01	ci left: 1.322070e-04	ci right 1.568132e-04	k: 539	n:3740000
Cons ci ratio: 8.853972e-03	ci left: 4.958055e-02	ci right 5.002175e-02	k: 186255	n:3740000
KS ci ratio: 2.063058e-01	ci left: 8.656948e-05	ci right 1.067313e-04	k: 360	n:3740000
COL6A6   3740000 perm   6379 sec   (586 perm/sec)   p_kst 9.625668e-05   p_cons 4.980080e-02   p_joint 1.441176e-04

Joint ci ratio: 1.686778e-01	ci left: 1.318544e-04	ci right 1.563950e-04	k: 539	n:3750000
Cons ci ratio: 8.843530e-03	ci left: 4.956621e-02	ci right 5.000675e-02	k: 186698	n:3750000
KS ci ratio: 2.063058e-01	ci left: 8.633862e-05	ci right 1.064467e-04	k: 360	n:3750000
COL6A6   3750000 perm   6410 sec   (585 perm/sec)   p_kst 9.600000e-05   p_cons 4.978613e-02   p_joint 1.437333e-04

Joint ci ratio: 1.682111e-01	ci left: 1.322680e-04	ci right 1.568106e-04	k: 542	n:3760000
Cons ci ratio: 8.831361e-03	ci left: 4.957078e-02	ci right 5.001076e-02	k: 187212	n:3760000
KS ci ratio: 2.057367e-01	ci left: 8.661348e-05	ci right 1.067229e-04	k: 362	n:3760000
COL6A6   3760000 perm   6440 sec   (584 perm/sec)   p_kst 9.627660e-05   p_cons 4.979043e-02   p_joint 1.441489e-04

Joint ci ratio: 1.680565e-01	ci left: 1.321712e-04	ci right 1.566710e-04	k: 543	n:3770000
Cons ci ratio: 8.818501e-03	ci left: 4.958328e-02	ci right 5.002272e-02	k: 187756	n:3770000
KS ci ratio: 2.054539e-01	ci left: 8.663533e-05	ci right 1.067187e-04	k: 363	n:3770000
COL6A6   3770000 perm   6470 sec   (583 perm/sec)   p_kst 9.628647e-05   p_cons 4.980265e-02   p_joint 1.440318e-04

Joint ci ratio: 1.677484e-01	ci left: 1.323284e-04	ci right 1.568079e-04	k: 545	n:3780000
Cons ci ratio: 8.806781e-03	ci left: 4.958409e-02	ci right 5.002295e-02	k: 188256	n:3780000
KS ci ratio: 2.048917e-01	ci left: 8.690805e-05	ci right 1.069926e-04	k: 365	n:3780000
COL6A6   3780000 perm   6501 sec   (581 perm/sec)   p_kst 9.656085e-05   p_cons 4.980317e-02   p_joint 1.441799e-04

Joint ci ratio: 1.675950e-01	ci left: 1.322321e-04	ci right 1.566690e-04	k: 546	n:3790000
Cons ci ratio: 8.794837e-03	ci left: 4.958779e-02	ci right 5.002609e-02	k: 188767	n:3790000
KS ci ratio: 2.046124e-01	ci left: 8.692907e-05	ci right 1.069877e-04	k: 366	n:3790000
COL6A6   3790000 perm   6532 sec   (580 perm/sec)   p_kst 9.656992e-05   p_cons 4.980660e-02   p_joint 1.440633e-04

Joint ci ratio: 1.672894e-01	ci left: 1.323883e-04	ci right 1.568051e-04	k: 548	n:3800000
Cons ci ratio: 8.783185e-03	ci left: 4.958885e-02	ci right 5.002657e-02	k: 189268	n:3800000
KS ci ratio: 2.037811e-01	ci left: 8.744942e-05	ci right 1.075359e-04	k: 369	n:3800000
COL6A6   3800000 perm   6564 sec   (579 perm/sec)   p_kst 9.710526e-05   p_cons 4.980737e-02   p_joint 1.442105e-04

Joint ci ratio: 1.668342e-01	ci left: 1.327953e-04	ci right 1.572138e-04	k: 551	n:3810000
Cons ci ratio: 8.771288e-03	ci left: 4.959305e-02	ci right 5.003021e-02	k: 189781	n:3810000
KS ci ratio: 2.037812e-01	ci left: 8.721989e-05	ci right 1.072537e-04	k: 369	n:3810000
COL6A6   3810000 perm   6596 sec   (578 perm/sec)   p_kst 9.685039e-05   p_cons 4.981129e-02   p_joint 1.446194e-04

Joint ci ratio: 1.662329e-01	ci left: 1.334512e-04	ci right 1.578930e-04	k: 555	n:3820000
Cons ci ratio: 8.759924e-03	ci left: 4.959200e-02	ci right 5.002858e-02	k: 190274	n:3820000
KS ci ratio: 2.032326e-01	ci left: 8.748845e-05	ci right 1.075231e-04	k: 371	n:3820000
COL6A6   3820000 perm   6628 sec   (576 perm/sec)   p_kst 9.712042e-05   p_cons 4.980995e-02   p_joint 1.452880e-04

Joint ci ratio: 1.686780e-01	ci left: 1.291003e-04	ci right 1.531283e-04	k: 539	n:3830000
Cons ci ratio: 8.748411e-03	ci left: 4.959304e-02	ci right 5.002905e-02	k: 190775	n:3830000
KS ci ratio: 2.026885e-01	ci left: 8.775568e-05	ci right 1.077911e-04	k: 373	n:3830000
COL6A6   3830000 perm   6658 sec   (575 perm/sec)   p_kst 9.738903e-05   p_cons 4.981070e-02   p_joint 1.407311e-04

Joint ci ratio: 1.683665e-01	ci left: 1.292629e-04	ci right 1.532723e-04	k: 541	n:3840000
Cons ci ratio: 8.736390e-03	ci left: 4.960005e-02	ci right 5.003553e-02	k: 191299	n:3840000
KS ci ratio: 2.018803e-01	ci left: 8.826883e-05	ci right 1.083311e-04	k: 376	n:3840000
COL6A6   3840000 perm   6689 sec   (574 perm/sec)   p_kst 9.791667e-05   p_cons 4.981745e-02   p_joint 1.408854e-04

Joint ci ratio: 1.680567e-01	ci left: 1.294248e-04	ci right 1.534155e-04	k: 543	n:3850000
Cons ci ratio: 8.725184e-03	ci left: 4.959873e-02	ci right 5.003364e-02	k: 191791	n:3850000
KS ci ratio: 2.010818e-01	ci left: 8.877948e-05	ci right 1.088682e-04	k: 379	n:3850000
COL6A6   3850000 perm   6720 sec   (573 perm/sec)   p_kst 9.844156e-05   p_cons 4.981584e-02   p_joint 1.410390e-04

Joint ci ratio: 1.682114e-01	ci left: 1.288413e-04	ci right 1.527481e-04	k: 542	n:3860000
Cons ci ratio: 8.714022e-03	ci left: 4.959742e-02	ci right 5.003175e-02	k: 192283	n:3860000
KS ci ratio: 2.010818e-01	ci left: 8.854948e-05	ci right 1.085862e-04	k: 379	n:3860000
COL6A6   3860000 perm   6751 sec   (572 perm/sec)   p_kst 9.818653e-05   p_cons 4.981425e-02   p_joint 1.404145e-04

Joint ci ratio: 1.720573e-01	ci left: 1.225708e-04	ci right 1.458881e-04	k: 518	n:3870000
Cons ci ratio: 8.702855e-03	ci left: 4.959663e-02	ci right 5.003040e-02	k: 192777	n:3870000
KS ci ratio: 2.008178e-01	ci left: 8.856606e-05	ci right 1.085770e-04	k: 380	n:3870000
COL6A6   3870000 perm   6783 sec   (571 perm/sec)   p_kst 9.819121e-05   p_cons 4.981318e-02   p_joint 1.338501e-04

Joint ci ratio: 1.715622e-01	ci left: 1.229949e-04	ci right 1.463186e-04	k: 521	n:3880000
Cons ci ratio: 8.691375e-03	ci left: 4.959971e-02	ci right 5.003293e-02	k: 193286	n:3880000
KS ci ratio: 2.008178e-01	ci left: 8.833780e-05	ci right 1.082972e-04	k: 380	n:3880000
COL6A6   3880000 perm   6814 sec   (569 perm/sec)   p_kst 9.793814e-05   p_cons 4.981598e-02   p_joint 1.342784e-04

Joint ci ratio: 1.712344e-01	ci left: 1.231708e-04	ci right 1.464786e-04	k: 523	n:3890000
Cons ci ratio: 8.679988e-03	ci left: 4.960225e-02	ci right 5.003492e-02	k: 193793	n:3890000
KS ci ratio: 2.008178e-01	ci left: 8.811071e-05	ci right 1.080188e-04	k: 380	n:3890000
COL6A6   3890000 perm   6845 sec   (568 perm/sec)   p_kst 9.768638e-05   p_cons 4.981825e-02   p_joint 1.344473e-04

Joint ci ratio: 1.710713e-01	ci left: 1.231004e-04	ci right 1.463704e-04	k: 524	n:3900000
Cons ci ratio: 8.668576e-03	ci left: 4.960555e-02	ci right 5.003768e-02	k: 194303	n:3900000
KS ci ratio: 2.008178e-01	ci left: 8.788478e-05	ci right 1.077418e-04	k: 380	n:3900000
COL6A6   3900000 perm   6878 sec   (567 perm/sec)   p_kst 9.743590e-05   p_cons 4.982128e-02   p_joint 1.343590e-04

Joint ci ratio: 1.709086e-01	ci left: 1.230304e-04	ci right 1.462627e-04	k: 525	n:3910000
Cons ci ratio: 8.657348e-03	ci left: 4.960730e-02	ci right 5.003889e-02	k: 194807	n:3910000
KS ci ratio: 2.008179e-01	ci left: 8.766001e-05	ci right 1.074662e-04	k: 380	n:3910000
COL6A6   3910000 perm   6911 sec   (566 perm/sec)   p_kst 9.718670e-05   p_cons 4.982276e-02   p_joint 1.342711e-04

Joint ci ratio: 1.707464e-01	ci left: 1.229607e-04	ci right 1.461556e-04	k: 526	n:3920000
Cons ci ratio: 8.646281e-03	ci left: 4.960778e-02	ci right 5.003881e-02	k: 195306	n:3920000
KS ci ratio: 2.005548e-01	ci left: 8.767867e-05	ci right 1.074600e-04	k: 381	n:3920000
COL6A6   3920000 perm   6943 sec   (565 perm/sec)   p_kst 9.719388e-05   p_cons 4.982296e-02   p_joint 1.341837e-04

Joint ci ratio: 1.705846e-01	ci left: 1.228914e-04	ci right 1.460490e-04	k: 527	n:3930000
Cons ci ratio: 8.635023e-03	ci left: 4.961078e-02	ci right 5.004128e-02	k: 195815	n:3930000
KS ci ratio: 2.005549e-01	ci left: 8.745557e-05	ci right 1.071866e-04	k: 381	n:3930000
COL6A6   3930000 perm   6974 sec   (564 perm/sec)   p_kst 9.694656e-05   p_cons 4.982570e-02   p_joint 1.340967e-04

Joint ci ratio: 1.702624e-01	ci left: 1.230655e-04	ci right 1.462076e-04	k: 529	n:3940000
Cons ci ratio: 8.623949e-03	ci left: 4.961226e-02	ci right 5.004221e-02	k: 196318	n:3940000
KS ci ratio: 2.002929e-01	ci left: 8.747467e-05	ci right 1.071810e-04	k: 382	n:3940000
COL6A6   3940000 perm   7005 sec   (562 perm/sec)   p_kst 9.695431e-05   p_cons 4.982690e-02   p_joint 1.342640e-04

Joint ci ratio: 1.758249e-01	ci left: 1.147612e-04	ci right 1.371217e-04	k: 496	n:3950000
Cons ci ratio: 8.612502e-03	ci left: 4.961827e-02	ci right 5.004770e-02	k: 196839	n:3950000
KS ci ratio: 2.000319e-01	ci left: 8.749370e-05	ci right 1.071755e-04	k: 383	n:3950000
COL6A6   3950000 perm   7037 sec   (561 perm/sec)   p_kst 9.696203e-05   p_cons 4.983266e-02   p_joint 1.255696e-04

Joint ci ratio: 1.756483e-01	ci left: 1.147128e-04	ci right 1.370390e-04	k: 497	n:3960000
Cons ci ratio: 8.601376e-03	ci left: 4.962123e-02	ci right 5.005013e-02	k: 197348	n:3960000
KS ci ratio: 2.000319e-01	ci left: 8.727275e-05	ci right 1.069049e-04	k: 383	n:3960000
COL6A6   3960000 perm   7069 sec   (560 perm/sec)   p_kst 9.671717e-05   p_cons 4.983535e-02   p_joint 1.255051e-04

Joint ci ratio: 1.754722e-01	ci left: 1.146647e-04	ci right 1.369568e-04	k: 498	n:3970000
Cons ci ratio: 8.590247e-03	ci left: 4.962468e-02	ci right 5.005305e-02	k: 197859	n:3970000
KS ci ratio: 1.997720e-01	ci left: 8.729220e-05	ci right 1.069001e-04	k: 384	n:3970000
COL6A6   3970000 perm   7101 sec   (559 perm/sec)   p_kst 9.672544e-05   p_cons 4.983854e-02   p_joint 1.254408e-04

Joint ci ratio: 1.760022e-01	ci left: 1.136559e-04	ci right 1.358258e-04	k: 495	n:3980000
Cons ci ratio: 8.580049e-03	ci left: 4.961833e-02	ci right 5.004614e-02	k: 198331	n:3980000
KS ci ratio: 1.997720e-01	ci left: 8.707287e-05	ci right 1.066315e-04	k: 384	n:3980000
COL6A6   3980000 perm   7133 sec   (558 perm/sec)   p_kst 9.648241e-05   p_cons 4.983191e-02   p_joint 1.243719e-04

Joint ci ratio: 1.758251e-01	ci left: 1.136107e-04	ci right 1.357470e-04	k: 496	n:3990000
Cons ci ratio: 8.569525e-03	ci left: 4.961602e-02	ci right 5.004328e-02	k: 198819	n:3990000
KS ci ratio: 1.995131e-01	ci left: 8.709275e-05	ci right 1.066274e-04	k: 385	n:3990000
COL6A6   3990000 perm   7165 sec   (557 perm/sec)   p_kst 9.649123e-05   p_cons 4.982932e-02   p_joint 1.243108e-04

Joint ci ratio: 1.758251e-01	ci left: 1.133267e-04	ci right 1.354077e-04	k: 496	n:4000000
Cons ci ratio: 8.559197e-03	ci left: 4.961197e-02	ci right 5.003868e-02	k: 199300	n:4000000
KS ci ratio: 1.995131e-01	ci left: 8.687501e-05	ci right 1.063608e-04	k: 385	n:4000000
COL6A6   4000000 perm   7198 sec   (556 perm/sec)   p_kst 9.625000e-05   p_cons 4.982500e-02   p_joint 1.240000e-04

Joint ci ratio: 1.758251e-01	ci left: 1.130440e-04	ci right 1.350700e-04	k: 496	n:4010000
Cons ci ratio: 8.548929e-03	ci left: 4.960770e-02	ci right 5.003385e-02	k: 199780	n:4010000
KS ci ratio: 1.995131e-01	ci left: 8.665837e-05	ci right 1.060956e-04	k: 385	n:4010000
COL6A6   4010000 perm   7230 sec   (555 perm/sec)   p_kst 9.600998e-05   p_cons 4.982045e-02   p_joint 1.236908e-04

Joint ci ratio: 1.758251e-01	ci left: 1.127628e-04	ci right 1.347340e-04	k: 496	n:4020000
Cons ci ratio: 8.538092e-03	ci left: 4.961014e-02	ci right 5.003578e-02	k: 200287	n:4020000
KS ci ratio: 1.992552e-01	ci left: 8.667914e-05	ci right 1.060928e-04	k: 386	n:4020000
COL6A6   4020000 perm   7263 sec   (554 perm/sec)   p_kst 9.601990e-05   p_cons 4.982264e-02   p_joint 1.233831e-04

Joint ci ratio: 1.758252e-01	ci left: 1.124830e-04	ci right 1.343997e-04	k: 496	n:4030000
Cons ci ratio: 8.526693e-03	ci left: 4.961927e-02	ci right 5.004441e-02	k: 200821	n:4030000
KS ci ratio: 1.992552e-01	ci left: 8.646405e-05	ci right 1.058296e-04	k: 386	n:4030000
COL6A6   4030000 perm   7295 sec   (552 perm/sec)   p_kst 9.578164e-05   p_cons 4.983151e-02   p_joint 1.230769e-04

Joint ci ratio: 1.758252e-01	ci left: 1.122046e-04	ci right 1.340670e-04	k: 496	n:4040000
Cons ci ratio: 8.515540e-03	ci left: 4.962612e-02	ci right 5.005076e-02	k: 201346	n:4040000
KS ci ratio: 1.992552e-01	ci left: 8.625003e-05	ci right 1.055676e-04	k: 386	n:4040000
COL6A6   4040000 perm   7328 sec   (551 perm/sec)   p_kst 9.554455e-05   p_cons 4.983812e-02   p_joint 1.227723e-04

Joint ci ratio: 1.756486e-01	ci left: 1.121636e-04	ci right 1.339937e-04	k: 497	n:4050000
Cons ci ratio: 8.505184e-03	ci left: 4.962456e-02	ci right 5.004867e-02	k: 201837	n:4050000
KS ci ratio: 1.989983e-01	ci left: 8.627167e-05	ci right 1.055662e-04	k: 387	n:4050000
COL6A6   4050000 perm   7361 sec   (550 perm/sec)   p_kst 9.555556e-05   p_cons 4.983630e-02   p_joint 1.227160e-04

Joint ci ratio: 1.754725e-01	ci left: 1.121228e-04	ci right 1.339208e-04	k: 498	n:4060000
Cons ci ratio: 8.494225e-03	ci left: 4.963014e-02	ci right 5.005375e-02	k: 202357	n:4060000
KS ci ratio: 1.989983e-01	ci left: 8.605918e-05	ci right 1.053061e-04	k: 387	n:4060000
COL6A6   4060000 perm   7393 sec   (549 perm/sec)   p_kst 9.532020e-05   p_cons 4.984163e-02   p_joint 1.226601e-04

Joint ci ratio: 1.754725e-01	ci left: 1.118473e-04	ci right 1.335918e-04	k: 498	n:4070000
Cons ci ratio: 8.483881e-03	ci left: 4.962932e-02	ci right 5.005240e-02	k: 202851	n:4070000
KS ci ratio: 1.989983e-01	ci left: 8.584773e-05	ci right 1.050474e-04	k: 387	n:4070000
COL6A6   4070000 perm   7425 sec   (548 perm/sec)   p_kst 9.508600e-05   p_cons 4.984054e-02   p_joint 1.223587e-04

Joint ci ratio: 1.752970e-01	ci left: 1.118075e-04	ci right 1.335202e-04	k: 499	n:4080000
Cons ci ratio: 8.474035e-03	ci left: 4.962337e-02	ci right 5.004590e-02	k: 203324	n:4080000
KS ci ratio: 1.989984e-01	ci left: 8.563732e-05	ci right 1.047899e-04	k: 387	n:4080000
COL6A6   4080000 perm   7458 sec   (547 perm/sec)   p_kst 9.485294e-05   p_cons 4.983431e-02   p_joint 1.223039e-04

Joint ci ratio: 1.749474e-01	ci left: 1.120017e-04	ci right 1.337041e-04	k: 501	n:4090000
Cons ci ratio: 8.464114e-03	ci left: 4.961866e-02	ci right 5.004066e-02	k: 203802	n:4090000
KS ci ratio: 1.982334e-01	ci left: 8.612496e-05	ci right 1.053036e-04	k: 390	n:4090000
COL6A6   4090000 perm   7492 sec   (546 perm/sec)   p_kst 9.535452e-05   p_cons 4.982934e-02   p_joint 1.224939e-04

Joint ci ratio: 1.749474e-01	ci left: 1.117286e-04	ci right 1.333780e-04	k: 501	n:4100000
Cons ci ratio: 8.453509e-03	ci left: 4.962201e-02	ci right 5.004351e-02	k: 204313	n:4100000
KS ci ratio: 1.982334e-01	ci left: 8.591490e-05	ci right 1.050468e-04	k: 390	n:4100000
COL6A6   4100000 perm   7524 sec   (545 perm/sec)   p_kst 9.512195e-05   p_cons 4.983244e-02   p_joint 1.221951e-04

Joint ci ratio: 1.747734e-01	ci left: 1.116894e-04	ci right 1.333075e-04	k: 502	n:4110000
Cons ci ratio: 8.443030e-03	ci left: 4.962437e-02	ci right 5.004536e-02	k: 204820	n:4110000
KS ci ratio: 1.979804e-01	ci left: 8.593710e-05	ci right 1.050466e-04	k: 391	n:4110000
COL6A6   4110000 perm   7558 sec   (544 perm/sec)   p_kst 9.513382e-05   p_cons 4.983455e-02   p_joint 1.221411e-04

Joint ci ratio: 1.742545e-01	ci left: 1.121146e-04	ci right 1.337438e-04	k: 505	n:4120000
Cons ci ratio: 8.433196e-03	ci left: 4.961994e-02	ci right 5.004040e-02	k: 205299	n:4120000
KS ci ratio: 1.974773e-01	ci left: 8.618992e-05	ci right 1.053011e-04	k: 393	n:4120000
COL6A6   4120000 perm   7591 sec   (543 perm/sec)   p_kst 9.538835e-05   p_cons 4.982985e-02   p_joint 1.225728e-04

Joint ci ratio: 1.740826e-01	ci left: 1.120748e-04	ci right 1.336727e-04	k: 506	n:4130000
Cons ci ratio: 8.422965e-03	ci left: 4.962036e-02	ci right 5.004032e-02	k: 205798	n:4130000
KS ci ratio: 1.974773e-01	ci left: 8.598123e-05	ci right 1.050461e-04	k: 393	n:4130000
COL6A6   4130000 perm   7624 sec   (542 perm/sec)   p_kst 9.515738e-05   p_cons 4.983002e-02   p_joint 1.225182e-04

Joint ci ratio: 1.739112e-01	ci left: 1.120351e-04	ci right 1.336018e-04	k: 507	n:4140000
Cons ci ratio: 8.413479e-03	ci left: 4.961283e-02	ci right 5.003224e-02	k: 206264	n:4140000
KS ci ratio: 1.969780e-01	ci left: 8.623278e-05	ci right 1.052993e-04	k: 395	n:4140000
COL6A6   4140000 perm   7657 sec   (541 perm/sec)   p_kst 9.541063e-05   p_cons 4.982222e-02   p_joint 1.224638e-04

Joint ci ratio: 1.739112e-01	ci left: 1.117651e-04	ci right 1.332799e-04	k: 507	n:4150000
Cons ci ratio: 8.404154e-03	ci left: 4.960389e-02	ci right 5.002276e-02	k: 206724	n:4150000
KS ci ratio: 1.967297e-01	ci left: 8.625408e-05	ci right 1.052984e-04	k: 396	n:4150000
COL6A6   4150000 perm   7690 sec   (540 perm/sec)   p_kst 9.542169e-05   p_cons 4.981301e-02   p_joint 1.221687e-04

Joint ci ratio: 1.737403e-01	ci left: 1.117264e-04	ci right 1.332104e-04	k: 508	n:4160000
Cons ci ratio: 8.393261e-03	ci left: 4.961299e-02	ci right 5.003139e-02	k: 207259	n:4160000
KS ci ratio: 1.964824e-01	ci left: 8.627529e-05	ci right 1.052974e-04	k: 397	n:4160000
COL6A6   4160000 perm   7724 sec   (539 perm/sec)   p_kst 9.543269e-05   p_cons 4.982188e-02   p_joint 1.221154e-04

Joint ci ratio: 1.735699e-01	ci left: 1.116878e-04	ci right 1.331411e-04	k: 509	n:4170000
Cons ci ratio: 8.383451e-03	ci left: 4.961031e-02	ci right 5.002820e-02	k: 207745	n:4170000
KS ci ratio: 1.962360e-01	ci left: 8.629641e-05	ci right 1.052965e-04	k: 398	n:4170000
COL6A6   4170000 perm   7757 sec   (538 perm/sec)   p_kst 9.544365e-05   p_cons 4.981894e-02   p_joint 1.220624e-04

Joint ci ratio: 1.734000e-01	ci left: 1.116495e-04	ci right 1.330722e-04	k: 510	n:4180000
Cons ci ratio: 8.372998e-03	ci left: 4.961529e-02	ci right 5.003270e-02	k: 208263	n:4180000
KS ci ratio: 1.962361e-01	ci left: 8.608996e-05	ci right 1.050446e-04	k: 398	n:4180000
COL6A6   4180000 perm   7792 sec   (536 perm/sec)   p_kst 9.521531e-05   p_cons 4.982368e-02   p_joint 1.220096e-04

Joint ci ratio: 1.730616e-01	ci left: 1.118396e-04	ci right 1.332526e-04	k: 512	n:4190000
Cons ci ratio: 8.362499e-03	ci left: 4.962120e-02	ci right 5.003813e-02	k: 208785	n:4190000
KS ci ratio: 1.962361e-01	ci left: 8.588449e-05	ci right 1.047939e-04	k: 398	n:4190000
COL6A6   4190000 perm   7826 sec   (535 perm/sec)   p_kst 9.498807e-05   p_cons 4.982936e-02   p_joint 1.221957e-04

Joint ci ratio: 1.730616e-01	ci left: 1.115733e-04	ci right 1.329354e-04	k: 512	n:4200000
Cons ci ratio: 8.352313e-03	ci left: 4.962399e-02	ci right 5.004044e-02	k: 209294	n:4200000
KS ci ratio: 1.959906e-01	ci left: 8.590641e-05	ci right 1.047942e-04	k: 399	n:4200000
COL6A6   4200000 perm   7859 sec   (534 perm/sec)   p_kst 9.500000e-05   p_cons 4.983190e-02   p_joint 1.219048e-04

Joint ci ratio: 1.728932e-01	ci left: 1.115356e-04	ci right 1.328674e-04	k: 513	n:4210000
Cons ci ratio: 8.342185e-03	ci left: 4.962654e-02	ci right 5.004249e-02	k: 209802	n:4210000
KS ci ratio: 1.957461e-01	ci left: 8.592824e-05	ci right 1.047944e-04	k: 400	n:4210000
COL6A6   4210000 perm   7893 sec   (533 perm/sec)   p_kst 9.501188e-05   p_cons 4.983420e-02   p_joint 1.218527e-04

Joint ci ratio: 1.727253e-01	ci left: 1.114980e-04	ci right 1.327998e-04	k: 514	n:4220000
Cons ci ratio: 8.332344e-03	ci left: 4.962623e-02	ci right 5.004169e-02	k: 210298	n:4220000
KS ci ratio: 1.957461e-01	ci left: 8.572462e-05	ci right 1.045461e-04	k: 400	n:4220000
COL6A6   4220000 perm   7928 sec   (532 perm/sec)   p_kst 9.478673e-05   p_cons 4.983365e-02   p_joint 1.218009e-04

Joint ci ratio: 1.718928e-01	ci left: 1.123655e-04	ci right 1.337188e-04	k: 519	n:4230000
Cons ci ratio: 8.322600e-03	ci left: 4.962521e-02	ci right 5.004018e-02	k: 210791	n:4230000
KS ci ratio: 1.952598e-01	ci left: 8.597163e-05	ci right 1.047949e-04	k: 402	n:4230000
COL6A6   4230000 perm   7962 sec   (531 perm/sec)   p_kst 9.503546e-05   p_cons 4.983239e-02   p_joint 1.226950e-04

Joint ci ratio: 1.718928e-01	ci left: 1.121004e-04	ci right 1.334034e-04	k: 519	n:4240000
Cons ci ratio: 8.313325e-03	ci left: 4.961926e-02	ci right 5.003371e-02	k: 211263	n:4240000
KS ci ratio: 1.952598e-01	ci left: 8.576887e-05	ci right 1.045477e-04	k: 402	n:4240000
COL6A6   4240000 perm   7996 sec   (530 perm/sec)   p_kst 9.481132e-05   p_cons 4.982618e-02   p_joint 1.224057e-04

Joint ci ratio: 1.735701e-01	ci left: 1.095854e-04	ci right 1.306350e-04	k: 509	n:4250000
Cons ci ratio: 8.303647e-03	ci left: 4.961827e-02	ci right 5.003223e-02	k: 211756	n:4250000
KS ci ratio: 1.950180e-01	ci left: 8.579086e-05	ci right 1.045485e-04	k: 403	n:4250000
COL6A6   4250000 perm   8030 sec   (529 perm/sec)   p_kst 9.482353e-05   p_cons 4.982494e-02   p_joint 1.197647e-04

Joint ci ratio: 1.734002e-01	ci left: 1.095528e-04	ci right 1.305732e-04	k: 510	n:4260000
Cons ci ratio: 8.293531e-03	ci left: 4.962267e-02	ci right 5.003616e-02	k: 212272	n:4260000
KS ci ratio: 1.950180e-01	ci left: 8.558947e-05	ci right 1.043031e-04	k: 403	n:4260000
COL6A6   4260000 perm   8064 sec   (528 perm/sec)   p_kst 9.460094e-05   p_cons 4.982911e-02   p_joint 1.197183e-04

Joint ci ratio: 1.730618e-01	ci left: 1.097443e-04	ci right 1.307561e-04	k: 512	n:4270000
Cons ci ratio: 8.283860e-03	ci left: 4.962238e-02	ci right 5.003538e-02	k: 212768	n:4270000
KS ci ratio: 1.950180e-01	ci left: 8.538903e-05	ci right 1.040588e-04	k: 403	n:4270000
COL6A6   4270000 perm   8099 sec   (527 perm/sec)   p_kst 9.437939e-05   p_cons 4.982857e-02   p_joint 1.199063e-04

Joint ci ratio: 1.730618e-01	ci left: 1.094879e-04	ci right 1.304506e-04	k: 512	n:4280000
Cons ci ratio: 8.274183e-03	ci left: 4.962255e-02	ci right 5.003507e-02	k: 213266	n:4280000
KS ci ratio: 1.950181e-01	ci left: 8.518952e-05	ci right 1.038157e-04	k: 403	n:4280000
COL6A6   4280000 perm   8135 sec   (526 perm/sec)   p_kst 9.415888e-05   p_cons 4.982850e-02   p_joint 1.196262e-04

Joint ci ratio: 1.770774e-01	ci left: 1.041062e-04	ci right 1.245506e-04	k: 489	n:4290000
Cons ci ratio: 8.265598e-03	ci left: 4.961063e-02	ci right 5.002262e-02	k: 213712	n:4290000
KS ci ratio: 1.947771e-01	ci left: 8.521267e-05	ci right 1.038181e-04	k: 404	n:4290000
COL6A6   4290000 perm   8169 sec   (525 perm/sec)   p_kst 9.417249e-05   p_cons 4.981632e-02   p_joint 1.139860e-04

Joint ci ratio: 1.765378e-01	ci left: 1.045309e-04	ci right 1.249895e-04	k: 492	n:4300000
Cons ci ratio: 8.256512e-03	ci left: 4.960479e-02	ci right 5.001628e-02	k: 214184	n:4300000
KS ci ratio: 1.945371e-01	ci left: 8.523572e-05	ci right 1.038206e-04	k: 405	n:4300000
COL6A6   4300000 perm   8204 sec   (524 perm/sec)   p_kst 9.418605e-05   p_cons 4.981023e-02   p_joint 1.144186e-04

Joint ci ratio: 1.760030e-01	ci left: 1.049537e-04	ci right 1.254262e-04	k: 495	n:4310000
Cons ci ratio: 8.247193e-03	ci left: 4.960200e-02	ci right 5.001299e-02	k: 214669	n:4310000
KS ci ratio: 1.945371e-01	ci left: 8.503796e-05	ci right 1.035797e-04	k: 405	n:4310000
COL6A6   4310000 perm   8238 sec   (523 perm/sec)   p_kst 9.396752e-05   p_cons 4.980719e-02   p_joint 1.148492e-04

Joint ci ratio: 1.758259e-01	ci left: 1.049320e-04	ci right 1.253775e-04	k: 496	n:4320000
Cons ci ratio: 8.238147e-03	ci left: 4.959644e-02	ci right 5.000694e-02	k: 215142	n:4320000
KS ci ratio: 1.945372e-01	ci left: 8.484111e-05	ci right 1.033399e-04	k: 405	n:4320000
COL6A6   4320000 perm   8273 sec   (522 perm/sec)   p_kst 9.375000e-05   p_cons 4.980139e-02   p_joint 1.148148e-04

Joint ci ratio: 1.751225e-01	ci left: 1.055729e-04	ci right 1.260523e-04	k: 500	n:4330000
Cons ci ratio: 8.228770e-03	ci left: 4.959506e-02	ci right 5.000508e-02	k: 215633	n:4330000
KS ci ratio: 1.940598e-01	ci left: 8.508460e-05	ci right 1.035856e-04	k: 407	n:4330000
COL6A6   4330000 perm   8308 sec   (521 perm/sec)   p_kst 9.399538e-05   p_cons 4.979977e-02   p_joint 1.154734e-04

Joint ci ratio: 1.746005e-01	ci left: 1.059907e-04	ci right 1.264833e-04	k: 503	n:4340000
Cons ci ratio: 8.220005e-03	ci left: 4.958702e-02	ci right 4.999653e-02	k: 216095	n:4340000
KS ci ratio: 1.935858e-01	ci left: 8.532702e-05	ci right 1.038301e-04	k: 409	n:4340000
COL6A6   4340000 perm   8342 sec   (520 perm/sec)   p_kst 9.423963e-05   p_cons 4.979147e-02   p_joint 1.158986e-04

Joint ci ratio: 1.746005e-01	ci left: 1.057470e-04	ci right 1.261925e-04	k: 503	n:4350000
Cons ci ratio: 8.210928e-03	ci left: 4.958292e-02	ci right 4.999194e-02	k: 216574	n:4350000
KS ci ratio: 1.935859e-01	ci left: 8.513087e-05	ci right 1.035914e-04	k: 409	n:4350000
COL6A6   4350000 perm   8376 sec   (519 perm/sec)   p_kst 9.402299e-05   p_cons 4.978713e-02   p_joint 1.156322e-04

Joint ci ratio: 1.746006e-01	ci left: 1.055045e-04	ci right 1.259031e-04	k: 503	n:4360000
Cons ci ratio: 8.201385e-03	ci left: 4.958455e-02	ci right 4.999311e-02	k: 217078	n:4360000
KS ci ratio: 1.935859e-01	ci left: 8.493561e-05	ci right 1.033538e-04	k: 409	n:4360000
COL6A6   4360000 perm   8411 sec   (518 perm/sec)   p_kst 9.380734e-05   p_cons 4.978853e-02   p_joint 1.153670e-04

Joint ci ratio: 1.744276e-01	ci left: 1.054819e-04	ci right 1.258538e-04	k: 504	n:4370000
Cons ci ratio: 8.191597e-03	ci left: 4.958938e-02	ci right 4.999749e-02	k: 217596	n:4370000
KS ci ratio: 1.933502e-01	ci left: 8.495900e-05	ci right 1.033572e-04	k: 410	n:4370000
COL6A6   4370000 perm   8448 sec   (517 perm/sec)   p_kst 9.382151e-05   p_cons 4.979314e-02   p_joint 1.153318e-04

Joint ci ratio: 1.742552e-01	ci left: 1.054594e-04	ci right 1.258047e-04	k: 505	n:4380000
Cons ci ratio: 8.181865e-03	ci left: 4.959396e-02	ci right 5.000162e-02	k: 218113	n:4380000
KS ci ratio: 1.931154e-01	ci left: 8.498230e-05	ci right 1.033606e-04	k: 411	n:4380000
COL6A6   4380000 perm   8483 sec   (516 perm/sec)   p_kst 9.383562e-05   p_cons 4.979749e-02   p_joint 1.152968e-04

Joint ci ratio: 1.742552e-01	ci left: 1.052192e-04	ci right 1.255182e-04	k: 505	n:4390000
Cons ci ratio: 8.172953e-03	ci left: 4.958942e-02	ci right 4.999660e-02	k: 218590	n:4390000
KS ci ratio: 1.931155e-01	ci left: 8.478871e-05	ci right 1.031251e-04	k: 411	n:4390000
COL6A6   4390000 perm   8517 sec   (515 perm/sec)   p_kst 9.362187e-05   p_cons 4.979271e-02   p_joint 1.150342e-04

Joint ci ratio: 1.739118e-01	ci left: 1.054148e-04	ci right 1.257072e-04	k: 507	n:4400000
Cons ci ratio: 8.164267e-03	ci left: 4.958264e-02	ci right 4.998932e-02	k: 219057	n:4400000
KS ci ratio: 1.926484e-01	ci left: 8.502861e-05	ci right 1.033672e-04	k: 413	n:4400000
COL6A6   4400000 perm   8553 sec   (514 perm/sec)   p_kst 9.386364e-05   p_cons 4.978568e-02   p_joint 1.152273e-04

Joint ci ratio: 1.735705e-01	ci left: 1.056095e-04	ci right 1.258954e-04	k: 509	n:4410000
Cons ci ratio: 8.155960e-03	ci left: 4.957181e-02	ci right 4.997799e-02	k: 219506	n:4410000
KS ci ratio: 1.924162e-01	ci left: 8.505163e-05	ci right 1.033705e-04	k: 414	n:4410000
COL6A6   4410000 perm   8588 sec   (514 perm/sec)   p_kst 9.387755e-05   p_cons 4.977460e-02   p_joint 1.154195e-04

Joint ci ratio: 1.735705e-01	ci left: 1.053706e-04	ci right 1.256106e-04	k: 509	n:4420000
Cons ci ratio: 8.147289e-03	ci left: 4.956555e-02	ci right 4.997124e-02	k: 219975	n:4420000
KS ci ratio: 1.919541e-01	ci left: 8.528992e-05	ci right 1.036109e-04	k: 416	n:4420000
COL6A6   4420000 perm   8623 sec   (513 perm/sec)   p_kst 9.411765e-05   p_cons 4.976810e-02   p_joint 1.151584e-04

Joint ci ratio: 1.735705e-01	ci left: 1.051327e-04	ci right 1.253270e-04	k: 509	n:4430000
Cons ci ratio: 8.138373e-03	ci left: 4.956247e-02	ci right 4.996769e-02	k: 220458	n:4430000
KS ci ratio: 1.919542e-01	ci left: 8.509739e-05	ci right 1.033770e-04	k: 416	n:4430000
COL6A6   4430000 perm   8659 sec   (512 perm/sec)   p_kst 9.390519e-05   p_cons 4.976479e-02   p_joint 1.148984e-04

Joint ci ratio: 1.728938e-01	ci left: 1.057578e-04	ci right 1.259847e-04	k: 513	n:4440000
Cons ci ratio: 8.128906e-03	ci left: 4.956615e-02	ci right 4.997093e-02	k: 220971	n:4440000
KS ci ratio: 1.914955e-01	ci left: 8.533456e-05	ci right 1.036162e-04	k: 418	n:4440000
COL6A6   4440000 perm   8693 sec   (511 perm/sec)   p_kst 9.414414e-05   p_cons 4.976824e-02   p_joint 1.155405e-04

Joint ci ratio: 1.728938e-01	ci left: 1.055201e-04	ci right 1.257016e-04	k: 513	n:4450000
Cons ci ratio: 8.118971e-03	ci left: 4.957564e-02	ci right 4.998000e-02	k: 221510	n:4450000
KS ci ratio: 1.914955e-01	ci left: 8.514280e-05	ci right 1.033833e-04	k: 418	n:4450000
COL6A6   4450000 perm   8730 sec   (510 perm/sec)   p_kst 9.393258e-05   p_cons 4.977753e-02   p_joint 1.152809e-04

Joint ci ratio: 1.725584e-01	ci left: 1.057126e-04	ci right 1.258875e-04	k: 515	n:4460000
Cons ci ratio: 8.109725e-03	ci left: 4.957748e-02	ci right 4.998140e-02	k: 222015	n:4460000
KS ci ratio: 1.905879e-01	ci left: 8.580587e-05	ci right 1.040912e-04	k: 422	n:4460000
COL6A6   4460000 perm   8766 sec   (509 perm/sec)   p_kst 9.461883e-05   p_cons 4.977915e-02   p_joint 1.154709e-04

Joint ci ratio: 1.722249e-01	ci left: 1.059042e-04	ci right 1.260726e-04	k: 517	n:4470000
Cons ci ratio: 8.100280e-03	ci left: 4.958200e-02	ci right 4.998548e-02	k: 222532	n:4470000
KS ci ratio: 1.903630e-01	ci left: 8.582695e-05	ci right 1.040927e-04	k: 423	n:4470000
COL6A6   4470000 perm   8801 sec   (508 perm/sec)   p_kst 9.463087e-05   p_cons 4.978345e-02   p_joint 1.156600e-04

Joint ci ratio: 1.720589e-01	ci left: 1.058814e-04	ci right 1.260240e-04	k: 518	n:4480000
Cons ci ratio: 8.091232e-03	ci left: 4.958226e-02	ci right 4.998529e-02	k: 223030	n:4480000
KS ci ratio: 1.901389e-01	ci left: 8.584796e-05	ci right 1.040942e-04	k: 424	n:4480000
COL6A6   4480000 perm   8836 sec   (507 perm/sec)   p_kst 9.464286e-05   p_cons 4.978348e-02   p_joint 1.156250e-04

Joint ci ratio: 1.715637e-01	ci left: 1.062850e-04	ci right 1.264402e-04	k: 521	n:4490000
Cons ci ratio: 8.081985e-03	ci left: 4.958519e-02	ci right 4.998778e-02	k: 223540	n:4490000
KS ci ratio: 1.892503e-01	ci left: 8.650533e-05	ci right 1.047955e-04	k: 428	n:4490000
COL6A6   4490000 perm   8873 sec   (506 perm/sec)   p_kst 9.532294e-05   p_cons 4.978619e-02   p_joint 1.160356e-04

Joint ci ratio: 1.713997e-01	ci left: 1.062615e-04	ci right 1.263910e-04	k: 522	n:4500000
Cons ci ratio: 8.072865e-03	ci left: 4.958699e-02	ci right 4.998914e-02	k: 224045	n:4500000
KS ci ratio: 1.892503e-01	ci left: 8.631309e-05	ci right 1.045626e-04	k: 428	n:4500000
COL6A6   4500000 perm   8908 sec   (505 perm/sec)   p_kst 9.511111e-05   p_cons 4.978778e-02   p_joint 1.160000e-04

Joint ci ratio: 1.710728e-01	ci left: 1.064504e-04	ci right 1.265732e-04	k: 524	n:4510000
Cons ci ratio: 8.063605e-03	ci left: 4.959079e-02	ci right 4.999250e-02	k: 224559	n:4510000
KS ci ratio: 1.890302e-01	ci left: 8.633294e-05	ci right 1.045630e-04	k: 429	n:4510000
COL6A6   4510000 perm   8945 sec   (504 perm/sec)   p_kst 9.512195e-05   p_cons 4.979135e-02   p_joint 1.161863e-04

Joint ci ratio: 1.709102e-01	ci left: 1.064266e-04	ci right 1.265238e-04	k: 525	n:4520000
Cons ci ratio: 8.054980e-03	ci left: 4.958749e-02	ci right 4.998875e-02	k: 225041	n:4520000
KS ci ratio: 1.888107e-01	ci left: 8.635272e-05	ci right 1.045634e-04	k: 430	n:4520000
COL6A6   4520000 perm   8981 sec   (503 perm/sec)   p_kst 9.513274e-05   p_cons 4.978783e-02   p_joint 1.161504e-04

Joint ci ratio: 1.709102e-01	ci left: 1.061917e-04	ci right 1.262445e-04	k: 525	n:4530000
Cons ci ratio: 8.045763e-03	ci left: 4.959149e-02	ci right 4.999231e-02	k: 225556	n:4530000
KS ci ratio: 1.888108e-01	ci left: 8.616209e-05	ci right 1.043325e-04	k: 430	n:4530000
COL6A6   4530000 perm   9017 sec   (502 perm/sec)   p_kst 9.492274e-05   p_cons 4.979161e-02   p_joint 1.158940e-04

Joint ci ratio: 1.705862e-01	ci left: 1.063795e-04	ci right 1.264258e-04	k: 527	n:4540000
Cons ci ratio: 8.036821e-03	ci left: 4.959260e-02	ci right 4.999299e-02	k: 226058	n:4540000
KS ci ratio: 1.885921e-01	ci left: 8.618217e-05	ci right 1.043334e-04	k: 431	n:4540000
COL6A6   4540000 perm   9053 sec   (501 perm/sec)   p_kst 9.493392e-05   p_cons 4.979251e-02   p_joint 1.160793e-04

Joint ci ratio: 1.705862e-01	ci left: 1.061457e-04	ci right 1.261479e-04	k: 527	n:4550000
Cons ci ratio: 8.028393e-03	ci left: 4.958801e-02	ci right 4.998794e-02	k: 226534	n:4550000
KS ci ratio: 1.883742e-01	ci left: 8.620216e-05	ci right 1.043342e-04	k: 432	n:4550000
COL6A6   4550000 perm   9090 sec   (501 perm/sec)   p_kst 9.494505e-05   p_cons 4.978769e-02   p_joint 1.158242e-04

Joint ci ratio: 1.702640e-01	ci left: 1.063328e-04	ci right 1.263286e-04	k: 529	n:4560000
Cons ci ratio: 8.019397e-03	ci left: 4.959045e-02	ci right 4.998995e-02	k: 227042	n:4560000
KS ci ratio: 1.881570e-01	ci left: 8.622209e-05	ci right 1.043350e-04	k: 433	n:4560000
COL6A6   4560000 perm   9125 sec   (500 perm/sec)   p_kst 9.495614e-05   p_cons 4.978991e-02   p_joint 1.160088e-04

Joint ci ratio: 1.704249e-01	ci left: 1.058906e-04	ci right 1.258240e-04	k: 528	n:4570000
Cons ci ratio: 8.010635e-03	ci left: 4.959047e-02	ci right 4.998953e-02	k: 227539	n:4570000
KS ci ratio: 1.877250e-01	ci left: 8.645047e-05	ci right 1.045649e-04	k: 435	n:4570000
COL6A6   4570000 perm   9162 sec   (499 perm/sec)   p_kst 9.518600e-05   p_cons 4.978972e-02   p_joint 1.155361e-04

Joint ci ratio: 1.702640e-01	ci left: 1.058685e-04	ci right 1.257769e-04	k: 529	n:4580000
Cons ci ratio: 8.001293e-03	ci left: 4.959768e-02	ci right 4.999633e-02	k: 228069	n:4580000
KS ci ratio: 1.877250e-01	ci left: 8.626171e-05	ci right 1.043366e-04	k: 435	n:4580000
COL6A6   4580000 perm   9198 sec   (498 perm/sec)   p_kst 9.497817e-05   p_cons 4.979672e-02   p_joint 1.155022e-04

Joint ci ratio: 1.702641e-01	ci left: 1.056378e-04	ci right 1.255029e-04	k: 529	n:4590000
Cons ci ratio: 7.992259e-03	ci left: 4.960161e-02	ci right 4.999983e-02	k: 228584	n:4590000
KS ci ratio: 1.877250e-01	ci left: 8.607377e-05	ci right 1.041093e-04	k: 435	n:4590000
COL6A6   4590000 perm   9234 sec   (497 perm/sec)   p_kst 9.477124e-05   p_cons 4.980044e-02   p_joint 1.152505e-04

Joint ci ratio: 1.701037e-01	ci left: 1.056163e-04	ci right 1.254567e-04	k: 530	n:4600000
Cons ci ratio: 7.982448e-03	ci left: 4.961506e-02	ci right 5.001290e-02	k: 229143	n:4600000
KS ci ratio: 1.875101e-01	ci left: 8.609384e-05	ci right 1.041106e-04	k: 436	n:4600000
COL6A6   4600000 perm   9271 sec   (496 perm/sec)   p_kst 9.478261e-05   p_cons 4.981370e-02   p_joint 1.152174e-04

Joint ci ratio: 1.699437e-01	ci left: 1.055949e-04	ci right 1.254107e-04	k: 531	n:4610000
Cons ci ratio: 7.974446e-03	ci left: 4.960745e-02	ci right 5.000483e-02	k: 229605	n:4610000
KS ci ratio: 1.872959e-01	ci left: 8.611383e-05	ci right 1.041118e-04	k: 437	n:4610000
COL6A6   4610000 perm   9308 sec   (495 perm/sec)   p_kst 9.479393e-05   p_cons 4.980586e-02   p_joint 1.151844e-04

Joint ci ratio: 1.699438e-01	ci left: 1.053663e-04	ci right 1.251393e-04	k: 531	n:4620000
Cons ci ratio: 7.966414e-03	ci left: 4.960052e-02	ci right 4.999745e-02	k: 230070	n:4620000
KS ci ratio: 1.872959e-01	ci left: 8.592743e-05	ci right 1.038865e-04	k: 437	n:4620000
COL6A6   4620000 perm   9344 sec   (494 perm/sec)   p_kst 9.458874e-05   p_cons 4.979870e-02   p_joint 1.149351e-04

Joint ci ratio: 1.699438e-01	ci left: 1.051388e-04	ci right 1.248690e-04	k: 531	n:4630000
Cons ci ratio: 7.957878e-03	ci left: 4.959987e-02	ci right 4.999637e-02	k: 230564	n:4630000
KS ci ratio: 1.870825e-01	ci left: 8.594771e-05	ci right 1.038882e-04	k: 438	n:4630000
COL6A6   4630000 perm   9382 sec   (494 perm/sec)   p_kst 9.460043e-05   p_cons 4.979784e-02   p_joint 1.146868e-04

Joint ci ratio: 1.696252e-01	ci left: 1.053249e-04	ci right 1.250492e-04	k: 533	n:4640000
Cons ci ratio: 7.949063e-03	ci left: 4.960289e-02	ci right 4.999897e-02	k: 231075	n:4640000
KS ci ratio: 1.866578e-01	ci left: 8.617335e-05	ci right 1.041155e-04	k: 440	n:4640000
COL6A6   4640000 perm   9419 sec   (493 perm/sec)   p_kst 9.482759e-05   p_cons 4.980065e-02   p_joint 1.148707e-04

Joint ci ratio: 1.694666e-01	ci left: 1.053043e-04	ci right 1.250045e-04	k: 534	n:4650000
Cons ci ratio: 7.941684e-03	ci left: 4.958915e-02	ci right 4.998475e-02	k: 231508	n:4650000
KS ci ratio: 1.862359e-01	ci left: 8.639806e-05	ci right 1.043417e-04	k: 442	n:4650000
COL6A6   4650000 perm   9456 sec   (492 perm/sec)   p_kst 9.505376e-05   p_cons 4.978667e-02   p_joint 1.148387e-04

Joint ci ratio: 1.686801e-01	ci left: 1.061059e-04	ci right 1.258545e-04	k: 539	n:4660000
Cons ci ratio: 7.933570e-03	ci left: 4.958446e-02	ci right 4.997962e-02	k: 231983	n:4660000
KS ci ratio: 1.860261e-01	ci left: 8.641725e-05	ci right 1.043424e-04	k: 443	n:4660000
COL6A6   4660000 perm   9493 sec   (491 perm/sec)   p_kst 9.506438e-05   p_cons 4.978176e-02   p_joint 1.156652e-04

Joint ci ratio: 1.683686e-01	ci left: 1.062889e-04	ci right 1.260313e-04	k: 541	n:4670000
Cons ci ratio: 7.925875e-03	ci left: 4.957509e-02	ci right 4.996979e-02	k: 232436	n:4670000
KS ci ratio: 1.856085e-01	ci left: 8.664055e-05	ci right 1.045671e-04	k: 445	n:4670000
COL6A6   4670000 perm   9531 sec   (490 perm/sec)   p_kst 9.528908e-05   p_cons 4.977216e-02   p_joint 1.158458e-04

Joint ci ratio: 1.682135e-01	ci left: 1.062665e-04	ci right 1.259847e-04	k: 542	n:4680000
Cons ci ratio: 7.917523e-03	ci left: 4.957387e-02	ci right 4.996814e-02	k: 232927	n:4680000
KS ci ratio: 1.854008e-01	ci left: 8.665917e-05	ci right 1.045673e-04	k: 446	n:4680000
COL6A6   4680000 perm   9568 sec   (489 perm/sec)   p_kst 9.529915e-05   p_cons 4.977073e-02   p_joint 1.158120e-04

Joint ci ratio: 1.682135e-01	ci left: 1.060399e-04	ci right 1.257161e-04	k: 542	n:4690000
Cons ci ratio: 7.909144e-03	ci left: 4.957329e-02	ci right 4.996714e-02	k: 233421	n:4690000
KS ci ratio: 1.854008e-01	ci left: 8.647440e-05	ci right 1.043443e-04	k: 446	n:4690000
COL6A6   4690000 perm   9605 sec   (488 perm/sec)   p_kst 9.509595e-05   p_cons 4.976994e-02   p_joint 1.155650e-04

Joint ci ratio: 1.677508e-01	ci left: 1.064257e-04	ci right 1.261137e-04	k: 545	n:4700000
Cons ci ratio: 7.900684e-03	ci left: 4.957399e-02	ci right 4.996742e-02	k: 233921	n:4700000
KS ci ratio: 1.854008e-01	ci left: 8.629041e-05	ci right 1.041223e-04	k: 446	n:4700000
COL6A6   4700000 perm   9643 sec   (487 perm/sec)   p_kst 9.489362e-05   p_cons 4.977043e-02   p_joint 1.159574e-04

Joint ci ratio: 1.677508e-01	ci left: 1.061998e-04	ci right 1.258460e-04	k: 545	n:4710000
Cons ci ratio: 7.892217e-03	ci left: 4.957511e-02	ci right 4.996812e-02	k: 234423	n:4710000
KS ci ratio: 1.854008e-01	ci left: 8.610720e-05	ci right 1.039013e-04	k: 446	n:4710000
COL6A6   4710000 perm   9682 sec   (486 perm/sec)   p_kst 9.469214e-05   p_cons 4.977134e-02   p_joint 1.157113e-04

Joint ci ratio: 1.677508e-01	ci left: 1.059748e-04	ci right 1.255793e-04	k: 545	n:4720000
Cons ci ratio: 7.884129e-03	ci left: 4.957199e-02	ci right 4.996458e-02	k: 234905	n:4720000
KS ci ratio: 1.854008e-01	ci left: 8.592477e-05	ci right 1.036811e-04	k: 446	n:4720000
COL6A6   4720000 perm   9720 sec   (486 perm/sec)   p_kst 9.449153e-05   p_cons 4.976801e-02   p_joint 1.154661e-04

Joint ci ratio: 1.672918e-01	ci left: 1.063584e-04	ci right 1.259747e-04	k: 548	n:4730000
Cons ci ratio: 7.875468e-03	ci left: 4.957607e-02	ci right 4.996825e-02	k: 235421	n:4730000
KS ci ratio: 1.851938e-01	ci left: 8.594472e-05	ci right 1.036831e-04	k: 447	n:4730000
COL6A6   4730000 perm   9757 sec   (485 perm/sec)   p_kst 9.450317e-05   p_cons 4.977188e-02   p_joint 1.158562e-04

Joint ci ratio: 1.671396e-01	ci left: 1.063361e-04	ci right 1.259287e-04	k: 549	n:4740000
Cons ci ratio: 7.866871e-03	ci left: 4.957970e-02	ci right 4.997148e-02	k: 235935	n:4740000
KS ci ratio: 1.845768e-01	ci left: 8.636703e-05	ci right 1.041266e-04	k: 450	n:4740000
COL6A6   4740000 perm   9796 sec   (484 perm/sec)   p_kst 9.493671e-05   p_cons 4.977532e-02   p_joint 1.158228e-04

Joint ci ratio: 1.668366e-01	ci left: 1.065157e-04	ci right 1.261022e-04	k: 551	n:4750000
Cons ci ratio: 7.858669e-03	ci left: 4.957891e-02	ci right 4.997027e-02	k: 236428	n:4750000
KS ci ratio: 1.843725e-01	ci left: 8.638600e-05	ci right 1.041276e-04	k: 451	n:4750000
COL6A6   4750000 perm   9833 sec   (483 perm/sec)   p_kst 9.494737e-05   p_cons 4.977432e-02   p_joint 1.160000e-04

Joint ci ratio: 1.666857e-01	ci left: 1.064933e-04	ci right 1.260561e-04	k: 552	n:4760000
Cons ci ratio: 7.850492e-03	ci left: 4.957812e-02	ci right 4.996907e-02	k: 236921	n:4760000
KS ci ratio: 1.841689e-01	ci left: 8.640492e-05	ci right 1.041286e-04	k: 452	n:4760000
COL6A6   4760000 perm   9871 sec   (482 perm/sec)   p_kst 9.495798e-05   p_cons 4.977332e-02   p_joint 1.159664e-04

Joint ci ratio: 1.663850e-01	ci left: 1.066718e-04	ci right 1.262286e-04	k: 554	n:4770000
Cons ci ratio: 7.842254e-03	ci left: 4.957838e-02	ci right 4.996892e-02	k: 237419	n:4770000
KS ci ratio: 1.837637e-01	ci left: 8.662375e-05	ci right 1.043489e-04	k: 454	n:4770000
COL6A6   4770000 perm   9909 sec   (481 perm/sec)   p_kst 9.517820e-05   p_cons 4.977338e-02   p_joint 1.161426e-04

Joint ci ratio: 1.662353e-01	ci left: 1.066492e-04	ci right 1.261824e-04	k: 555	n:4780000
Cons ci ratio: 7.834094e-03	ci left: 4.957801e-02	ci right 4.996814e-02	k: 237914	n:4780000
KS ci ratio: 1.835620e-01	ci left: 8.664212e-05	ci right 1.043494e-04	k: 455	n:4780000
COL6A6   4780000 perm   9947 sec   (481 perm/sec)   p_kst 9.518828e-05   p_cons 4.977280e-02   p_joint 1.161088e-04

Joint ci ratio: 1.660861e-01	ci left: 1.066266e-04	ci right 1.261364e-04	k: 556	n:4790000
Cons ci ratio: 7.826236e-03	ci left: 4.957431e-02	ci right 4.996402e-02	k: 238393	n:4790000
KS ci ratio: 1.833611e-01	ci left: 8.666042e-05	ci right 1.043499e-04	k: 456	n:4790000
COL6A6   4790000 perm   9986 sec   (480 perm/sec)   p_kst 9.519833e-05   p_cons 4.976889e-02   p_joint 1.160752e-04

Joint ci ratio: 1.663851e-01	ci left: 1.060051e-04	ci right 1.254397e-04	k: 554	n:4800000
Cons ci ratio: 7.818091e-03	ci left: 4.957437e-02	ci right 4.996367e-02	k: 238890	n:4800000
KS ci ratio: 1.827622e-01	ci left: 8.707624e-05	ci right 1.047861e-04	k: 459	n:4800000
COL6A6   4800000 perm   10024 sec   (479 perm/sec)   p_kst 9.562500e-05   p_cons 4.976875e-02   p_joint 1.154167e-04

Joint ci ratio: 1.668367e-01	ci left: 1.051870e-04	ci right 1.245292e-04	k: 551	n:4810000
Cons ci ratio: 7.810144e-03	ci left: 4.957236e-02	ci right 4.996124e-02	k: 239377	n:4810000
KS ci ratio: 1.825638e-01	ci left: 8.709360e-05	ci right 1.047856e-04	k: 460	n:4810000
COL6A6   4810000 perm   10062 sec   (478 perm/sec)   p_kst 9.563410e-05   p_cons 4.976653e-02   p_joint 1.145530e-04

Joint ci ratio: 1.666858e-01	ci left: 1.051676e-04	ci right 1.244870e-04	k: 552	n:4820000
Cons ci ratio: 7.801810e-03	ci left: 4.957532e-02	ci right 4.996381e-02	k: 239888	n:4820000
KS ci ratio: 1.825639e-01	ci left: 8.691291e-05	ci right 1.045682e-04	k: 460	n:4820000
COL6A6   4820000 perm   10100 sec   (477 perm/sec)   p_kst 9.543568e-05   p_cons 4.976929e-02   p_joint 1.145228e-04

Joint ci ratio: 1.665353e-01	ci left: 1.051483e-04	ci right 1.244449e-04	k: 553	n:4830000
Cons ci ratio: 7.793331e-03	ci left: 4.958034e-02	ci right 4.996844e-02	k: 240409	n:4830000
KS ci ratio: 1.825639e-01	ci left: 8.673296e-05	ci right 1.043517e-04	k: 460	n:4830000
COL6A6   4830000 perm   10138 sec   (476 perm/sec)   p_kst 9.523810e-05   p_cons 4.977412e-02   p_joint 1.144928e-04

Joint ci ratio: 1.659372e-01	ci left: 1.057231e-04	ci right 1.250486e-04	k: 557	n:4840000
Cons ci ratio: 7.785833e-03	ci left: 4.957378e-02	ci right 4.996147e-02	k: 240874	n:4840000
KS ci ratio: 1.819727e-01	ci left: 8.714532e-05	ci right 1.047842e-04	k: 463	n:4840000
COL6A6   4840000 perm   10177 sec   (476 perm/sec)   p_kst 9.566116e-05   p_cons 4.976736e-02   p_joint 1.150826e-04

Joint ci ratio: 1.657888e-01	ci left: 1.057027e-04	ci right 1.250055e-04	k: 558	n:4850000
Cons ci ratio: 7.778051e-03	ci left: 4.957096e-02	ci right 4.995823e-02	k: 241357	n:4850000
KS ci ratio: 1.819727e-01	ci left: 8.696564e-05	ci right 1.045682e-04	k: 463	n:4850000
COL6A6   4850000 perm   10215 sec   (475 perm/sec)   p_kst 9.546392e-05   p_cons 4.976433e-02   p_joint 1.150515e-04

Joint ci ratio: 1.656407e-01	ci left: 1.056825e-04	ci right 1.249625e-04	k: 559	n:4860000
Cons ci ratio: 7.770360e-03	ci left: 4.956733e-02	ci right 4.995419e-02	k: 241836	n:4860000
KS ci ratio: 1.815818e-01	ci left: 8.717950e-05	ci right 1.047832e-04	k: 465	n:4860000
COL6A6   4860000 perm   10254 sec   (474 perm/sec)   p_kst 9.567901e-05   p_cons 4.976049e-02   p_joint 1.150206e-04

Joint ci ratio: 1.654930e-01	ci left: 1.056623e-04	ci right 1.249198e-04	k: 560	n:4870000
Cons ci ratio: 7.762608e-03	ci left: 4.956474e-02	ci right 4.995119e-02	k: 242320	n:4870000
KS ci ratio: 1.813873e-01	ci left: 8.719649e-05	ci right 1.047827e-04	k: 466	n:4870000
COL6A6   4870000 perm   10293 sec   (473 perm/sec)   p_kst 9.568789e-05   p_cons 4.975770e-02   p_joint 1.149897e-04

Joint ci ratio: 1.653457e-01	ci left: 1.056422e-04	ci right 1.248772e-04	k: 561	n:4880000
Cons ci ratio: 7.754441e-03	ci left: 4.956748e-02	ci right 4.995354e-02	k: 242830	n:4880000
KS ci ratio: 1.813873e-01	ci left: 8.701781e-05	ci right 1.045680e-04	k: 466	n:4880000
COL6A6   4880000 perm   10331 sec   (472 perm/sec)   p_kst 9.549180e-05   p_cons 4.976025e-02   p_joint 1.149590e-04

Joint ci ratio: 1.653457e-01	ci left: 1.054262e-04	ci right 1.246218e-04	k: 561	n:4890000
Cons ci ratio: 7.746602e-03	ci left: 4.956654e-02	ci right 4.995220e-02	k: 243322	n:4890000
KS ci ratio: 1.813873e-01	ci left: 8.683986e-05	ci right 1.043542e-04	k: 466	n:4890000
COL6A6   4890000 perm   10370 sec   (472 perm/sec)   p_kst 9.529652e-05   p_cons 4.975910e-02   p_joint 1.147239e-04

Joint ci ratio: 1.651988e-01	ci left: 1.054067e-04	ci right 1.245800e-04	k: 562	n:4900000
Cons ci ratio: 7.738536e-03	ci left: 4.956865e-02	ci right 4.995392e-02	k: 243829	n:4900000
KS ci ratio: 1.813873e-01	ci left: 8.666263e-05	ci right 1.041412e-04	k: 466	n:4900000
COL6A6   4900000 perm   10408 sec   (471 perm/sec)   p_kst 9.510204e-05   p_cons 4.976102e-02   p_joint 1.146939e-04

Joint ci ratio: 1.649061e-01	ci left: 1.055825e-04	ci right 1.247504e-04	k: 564	n:4910000
Cons ci ratio: 7.730646e-03	ci left: 4.956892e-02	ci right 4.995381e-02	k: 244327	n:4910000
KS ci ratio: 1.813873e-01	ci left: 8.648613e-05	ci right 1.039291e-04	k: 466	n:4910000
COL6A6   4910000 perm   10447 sec   (470 perm/sec)   p_kst 9.490835e-05   p_cons 4.976110e-02   p_joint 1.148676e-04

Joint ci ratio: 1.649062e-01	ci left: 1.053679e-04	ci right 1.244969e-04	k: 564	n:4920000
Cons ci ratio: 7.723044e-03	ci left: 4.956595e-02	ci right 4.995043e-02	k: 244809	n:4920000
KS ci ratio: 1.813873e-01	ci left: 8.631035e-05	ci right 1.037179e-04	k: 466	n:4920000
COL6A6   4920000 perm   10486 sec   (469 perm/sec)   p_kst 9.471545e-05   p_cons 4.975793e-02   p_joint 1.146341e-04

Joint ci ratio: 1.646150e-01	ci left: 1.055431e-04	ci right 1.246667e-04	k: 566	n:4930000
Cons ci ratio: 7.715102e-03	ci left: 4.956745e-02	ci right 4.995154e-02	k: 245313	n:4930000
KS ci ratio: 1.813874e-01	ci left: 8.613527e-05	ci right 1.035075e-04	k: 466	n:4930000
COL6A6   4930000 perm   10525 sec   (468 perm/sec)   p_kst 9.452333e-05   p_cons 4.975923e-02   p_joint 1.148073e-04

Joint ci ratio: 1.644701e-01	ci left: 1.055236e-04	ci right 1.246251e-04	k: 567	n:4940000
Cons ci ratio: 7.707893e-03	ci left: 4.956025e-02	ci right 4.994392e-02	k: 245774	n:4940000
KS ci ratio: 1.811935e-01	ci left: 8.615415e-05	ci right 1.035096e-04	k: 467	n:4940000
COL6A6   4940000 perm   10564 sec   (468 perm/sec)   p_kst 9.453441e-05   p_cons 4.975182e-02   p_joint 1.147773e-04

Joint ci ratio: 1.643255e-01	ci left: 1.055041e-04	ci right 1.245837e-04	k: 568	n:4950000
Cons ci ratio: 7.700177e-03	ci left: 4.955953e-02	ci right 4.994282e-02	k: 246267	n:4950000
KS ci ratio: 1.810002e-01	ci left: 8.617297e-05	ci right 1.035116e-04	k: 468	n:4950000
COL6A6   4950000 perm   10603 sec   (467 perm/sec)   p_kst 9.454545e-05   p_cons 4.975091e-02   p_joint 1.147475e-04

Joint ci ratio: 1.640374e-01	ci left: 1.056780e-04	ci right 1.247523e-04	k: 570	n:4960000
Cons ci ratio: 7.692009e-03	ci left: 4.956465e-02	ci right 4.994757e-02	k: 246789	n:4960000
KS ci ratio: 1.808075e-01	ci left: 8.619172e-05	ci right 1.035137e-04	k: 469	n:4960000
COL6A6   4960000 perm   10642 sec   (466 perm/sec)   p_kst 9.455645e-05   p_cons 4.975585e-02   p_joint 1.149194e-04

Joint ci ratio: 1.640375e-01	ci left: 1.054654e-04	ci right 1.245013e-04	k: 570	n:4970000
Cons ci ratio: 7.684489e-03	ci left: 4.956212e-02	ci right 4.994464e-02	k: 247273	n:4970000
KS ci ratio: 1.808075e-01	ci left: 8.601829e-05	ci right 1.033054e-04	k: 469	n:4970000
COL6A6   4970000 perm   10682 sec   (465 perm/sec)   p_kst 9.436620e-05   p_cons 4.975312e-02   p_joint 1.146881e-04

Joint ci ratio: 1.640375e-01	ci left: 1.052536e-04	ci right 1.242513e-04	k: 570	n:4980000
Cons ci ratio: 7.676664e-03	ci left: 4.956361e-02	ci right 4.994575e-02	k: 247777	n:4980000
KS ci ratio: 1.806155e-01	ci left: 8.603728e-05	ci right 1.033078e-04	k: 470	n:4980000
COL6A6   4980000 perm   10721 sec   (464 perm/sec)   p_kst 9.437751e-05   p_cons 4.975442e-02   p_joint 1.144578e-04

Joint ci ratio: 1.638940e-01	ci left: 1.052349e-04	ci right 1.242109e-04	k: 571	n:4990000
Cons ci ratio: 7.669448e-03	ci left: 4.955789e-02	ci right 4.993963e-02	k: 248245	n:4990000
KS ci ratio: 1.802332e-01	ci left: 8.624757e-05	ci right 1.035197e-04	k: 472	n:4990000
COL6A6   4990000 perm   10761 sec   (464 perm/sec)   p_kst 9.458918e-05   p_cons 4.974850e-02   p_joint 1.144289e-04

Joint ci ratio: 2.141653e-01	ci left: 5.982754e-05	ci right 7.436188e-05	k: 334	n:5000000
Cons ci ratio: 8.173245e-03	ci left: 4.380263e-02	ci right 4.416230e-02	k: 219911	n:5000000
KS ci ratio: 1.800430e-01	ci left: 8.626605e-05	ci right 1.035216e-04	k: 473	n:5000000
COL6A6   5000000 perm   10801 sec   (463 perm/sec)   p_kst 9.460000e-05   p_cons 4.398220e-02   p_joint 6.680000e-05

Outputting figure to mutsig2_images.part000000000041/COL6A6.20_6936_5000000_9.46e-05_0.043982_6.68e-05.png
                gene_name: COL6A6
               theta_stop: 0.21 
                    nperm: 5000000 
                     p_ks: 9.46e-05 
        ci_ks_bounds_left: 8.63e-05 
       ci_ks_bounds_right: 0.00010 
                   p_cons: 0.044 
      ci_cons_bounds_left: 0.044 
     ci_cons_bounds_right: 0.044 
                  p_joint: 6.68e-05 
     ci_joint_bounds_left: 5.98e-05 
    ci_joint_bounds_right: 7.44e-05 

Current progress: 7 percent done.
COL12A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.011987e-02	ci left: 7.834036e-01	ci right 7.994263e-01	k: 7915	n:10000
Cons ci ratio: 6.055541e-02	ci left: 2.862707e-01	ci right 3.042488e-01	k: 2952	n:10000
KS ci ratio: 1.944141e-02	ci left: 7.946610e-01	ci right 8.103624e-01	k: 8026	n:10000
COL12A1   10000 perm   3 sec   (3565 perm/sec)   p_kst 8.026000e-01   p_cons 2.952000e-01   p_joint 7.915000e-01

Outputting figure to mutsig2_images.part000000000041/COL12A1.18_9452_10000_0.8026_0.2952_0.7915.png
                gene_name: COL12A1
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 9 percent done.
COL19A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.854796e-02	ci left: 6.439792e-01	ci right 6.627314e-01	k: 6534	n:10000
KS ci ratio: 1.554170e-02	ci left: 8.573295e-01	ci right 8.708576e-01	k: 8642	n:10000
COL19A1   10000 perm   2 sec   (4363 perm/sec)   p_kst 8.642000e-01   p_cons 6.534000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000041/COL19A1.18_3629_10000_0.8642_0.6534_1.png
                gene_name: COL19A1
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 11 percent done.
COL3A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.533935e-02	ci left: 1.376631e-01	ci right 1.515446e-01	k: 1445	n:10000
Cons ci ratio: 1.872080e-01	ci left: 3.805695e-02	ci right 4.601263e-02	k: 419	n:10000
KS ci ratio: 2.375459e-02	ci left: 7.225963e-01	ci right 7.400688e-01	k: 7314	n:10000
COL3A1   10000 perm   2 sec   (4396 perm/sec)   p_kst 7.314000e-01   p_cons 4.190000e-02   p_joint 1.445000e-01

Joint ci ratio: 7.267225e-02	ci left: 1.223656e-01	ci right 1.316432e-01	k: 2539	n:20000
Cons ci ratio: 1.342244e-01	ci left: 3.814864e-02	ci right 4.368584e-02	k: 817	n:20000
KS ci ratio: 1.682509e-02	ci left: 7.245443e-01	ci right 7.368886e-01	k: 14615	n:20000
COL3A1   20000 perm   5 sec   (4044 perm/sec)   p_kst 7.307500e-01   p_cons 4.085000e-02   p_joint 1.269500e-01

Joint ci ratio: 5.890390e-02	ci left: 1.248314e-01	ci right 1.324407e-01	k: 3858	n:30000
Cons ci ratio: 1.086289e-01	ci left: 3.933588e-02	ci right 4.388676e-02	k: 1247	n:30000
KS ci ratio: 1.377552e-02	ci left: 7.246022e-01	ci right 7.346866e-01	k: 21890	n:30000
COL3A1   30000 perm   8 sec   (3921 perm/sec)   p_kst 7.296667e-01   p_cons 4.156667e-02   p_joint 1.286000e-01

Joint ci ratio: 4.793762e-02	ci left: 1.397808e-01	ci right 1.466710e-01	k: 5728	n:40000
Cons ci ratio: 9.381139e-02	ci left: 3.985957e-02	ci right 4.380730e-02	k: 1672	n:40000
KS ci ratio: 1.194410e-02	ci left: 7.248162e-01	ci right 7.335505e-01	k: 29168	n:40000
COL3A1   40000 perm   10 sec   (3823 perm/sec)   p_kst 7.292000e-01   p_cons 4.180000e-02   p_joint 1.432000e-01

Outputting figure to mutsig2_images.part000000000041/COL3A1.16_4605_40000_0.7292_0.0418_0.1432.png
                gene_name: COL3A1
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.042 
      ci_cons_bounds_left: 0.040 
     ci_cons_bounds_right: 0.044 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 13 percent done.
COL1A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.658135e-02	ci left: 2.487538e-01	ci right 2.659878e-01	k: 2573	n:10000
Cons ci ratio: 1.676522e-02	ci left: 8.381638e-01	ci right 8.524344e-01	k: 8454	n:10000
KS ci ratio: 1.004742e-01	ci left: 1.254236e-01	ci right 1.387915e-01	k: 1320	n:10000
COL1A2   10000 perm   2 sec   (4657 perm/sec)   p_kst 1.320000e-01   p_cons 8.454000e-01   p_joint 2.573000e-01

Joint ci ratio: 5.266004e-02	ci left: 2.112047e-01	ci right 2.226777e-01	k: 4338	n:20000
Cons ci ratio: 1.192206e-02	ci left: 8.387949e-01	ci right 8.489049e-01	k: 16878	n:20000
KS ci ratio: 7.044928e-02	ci left: 1.293073e-01	ci right 1.387993e-01	k: 2680	n:20000
COL1A2   20000 perm   5 sec   (4272 perm/sec)   p_kst 1.340000e-01   p_cons 8.439000e-01   p_joint 2.169000e-01

Outputting figure to mutsig2_images.part000000000041/COL1A2.14_4309_20000_0.134_0.8439_0.2169.png
                gene_name: COL1A2
               theta_stop: 0.070 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 15 percent done.
COL5A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.516126e-02	ci left: 4.198695e-01	ci right 4.393715e-01	k: 4296	n:10000
Cons ci ratio: 5.519279e-02	ci left: 3.259469e-01	ci right 3.445492e-01	k: 3352	n:10000
KS ci ratio: 4.343503e-02	ci left: 4.390178e-01	ci right 4.586120e-01	k: 4488	n:10000
COL5A2   10000 perm   2 sec   (4281 perm/sec)   p_kst 4.488000e-01   p_cons 3.352000e-01   p_joint 4.296000e-01

Outputting figure to mutsig2_images.part000000000041/COL5A2.14_4716_10000_0.4488_0.3352_0.4296.png
                gene_name: COL5A2
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 16 percent done.
COL7A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.883207e-02	ci left: 6.394525e-01	ci right 6.582607e-01	k: 6489	n:10000
Cons ci ratio: 6.164979e-02	ci left: 2.789393e-01	ci right 2.967844e-01	k: 2878	n:10000
KS ci ratio: 3.632827e-02	ci left: 5.280685e-01	ci right 5.477094e-01	k: 5379	n:10000
COL7A1   10000 perm   3 sec   (3410 perm/sec)   p_kst 5.379000e-01   p_cons 2.878000e-01   p_joint 6.489000e-01

Outputting figure to mutsig2_images.part000000000041/COL7A1.14_9307_10000_0.5379_0.2878_0.6489.png
                gene_name: COL7A1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 18 percent done.
COL11A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.637301e-02	ci left: 2.499404e-01	ci right 2.672005e-01	k: 2585	n:10000
Cons ci ratio: 1.130045e-01	ci left: 1.012990e-01	ci right 1.135307e-01	k: 1073	n:10000
KS ci ratio: 2.536206e-02	ci left: 6.958521e-01	ci right 7.138284e-01	k: 7049	n:10000
COL11A2   10000 perm   2 sec   (4033 perm/sec)   p_kst 7.049000e-01   p_cons 1.073000e-01   p_joint 2.585000e-01

Joint ci ratio: 4.527850e-02	ci left: 2.663874e-01	ci right 2.787788e-01	k: 5451	n:20000
Cons ci ratio: 7.928886e-02	ci left: 1.045657e-01	ci right 1.132484e-01	k: 2177	n:20000
KS ci ratio: 1.861339e-02	ci left: 6.827336e-01	ci right 6.956114e-01	k: 13784	n:20000
COL11A2   20000 perm   5 sec   (3736 perm/sec)   p_kst 6.892000e-01   p_cons 1.088500e-01   p_joint 2.725500e-01

Outputting figure to mutsig2_images.part000000000041/COL11A2.13_5550_20000_0.6892_0.10885_0.27255.png
                gene_name: COL11A2
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 20 percent done.
COL6A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.173059e-02	ci left: 5.944357e-01	ci right 6.137036e-01	k: 6041	n:10000
Cons ci ratio: 1.855357e-02	ci left: 8.092795e-01	ci right 8.245354e-01	k: 8170	n:10000
KS ci ratio: 4.676357e-02	ci left: 4.029277e-01	ci right 4.223232e-01	k: 4126	n:10000
COL6A3   10000 perm   3 sec   (3591 perm/sec)   p_kst 4.126000e-01   p_cons 8.170000e-01   p_joint 6.041000e-01

Outputting figure to mutsig2_images.part000000000041/COL6A3.13_9753_10000_0.4126_0.817_0.6041.png
                gene_name: COL6A3
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 22 percent done.
COL2A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.690855e-02	ci left: 4.014334e-01	ci right 4.208184e-01	k: 4111	n:10000
KS ci ratio: 3.005121e-02	ci left: 6.202494e-01	ci right 6.392749e-01	k: 6298	n:10000
COL2A1   10000 perm   2 sec   (4392 perm/sec)   p_kst 6.298000e-01   p_cons 4.111000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000041/COL2A1.12_4680_10000_0.6298_0.4111_1.png
                gene_name: COL2A1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 24 percent done.
COL5A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.083685e-01	ci left: 1.093957e-01	ci right 1.220291e-01	k: 1156	n:10000
Cons ci ratio: 2.051534e-02	ci left: 7.768156e-01	ci right 7.930181e-01	k: 7850	n:10000
KS ci ratio: 2.260160e-01	ci left: 2.589329e-02	ci right 3.258470e-02	k: 291	n:10000
COL5A3   10000 perm   2 sec   (4567 perm/sec)   p_kst 2.910000e-02   p_cons 7.850000e-01   p_joint 1.156000e-01

Joint ci ratio: 1.009534e-01	ci left: 6.655043e-02	ci right 7.367517e-02	k: 1401	n:20000
Cons ci ratio: 1.501874e-02	ci left: 7.671805e-01	ci right 7.788400e-01	k: 15461	n:20000
KS ci ratio: 1.628626e-01	ci left: 2.585348e-02	ci right 3.048506e-02	k: 562	n:20000
COL5A3   20000 perm   5 sec   (4178 perm/sec)   p_kst 2.810000e-02   p_cons 7.730500e-01   p_joint 7.005000e-02

Joint ci ratio: 8.527588e-02	ci left: 6.298724e-02	ci right 6.863053e-02	k: 1973	n:30000
Cons ci ratio: 1.228079e-02	ci left: 7.677468e-01	ci right 7.772670e-01	k: 23176	n:30000
KS ci ratio: 1.337539e-01	ci left: 2.596885e-02	ci right 2.972334e-02	k: 834	n:30000
COL5A3   30000 perm   7 sec   (4027 perm/sec)   p_kst 2.780000e-02   p_cons 7.725333e-01   p_joint 6.576667e-02

Joint ci ratio: 8.862855e-02	ci left: 4.455487e-02	ci right 4.871127e-02	k: 1864	n:40000
Cons ci ratio: 1.034938e-02	ci left: 7.778957e-01	ci right 7.860133e-01	k: 31279	n:40000
KS ci ratio: 1.205584e-01	ci left: 2.419556e-02	ci right 2.732381e-02	k: 1029	n:40000
COL5A3   40000 perm   10 sec   (3924 perm/sec)   p_kst 2.572500e-02   p_cons 7.819750e-01   p_joint 4.660000e-02

Joint ci ratio: 7.491216e-02	ci left: 4.997171e-02	ci right 5.388052e-02	k: 2595	n:50000
Cons ci ratio: 9.247397e-03	ci left: 7.786765e-01	ci right 7.859307e-01	k: 39116	n:50000
KS ci ratio: 1.074674e-01	ci left: 2.452533e-02	ci right 2.733007e-02	k: 1295	n:50000
COL5A3   50000 perm   13 sec   (3848 perm/sec)   p_kst 2.590000e-02   p_cons 7.823200e-01   p_joint 5.190000e-02

Joint ci ratio: 6.315613e-02	ci left: 5.842469e-02	ci right 6.225131e-02	k: 3619	n:60000
Cons ci ratio: 8.473143e-03	ci left: 7.777192e-01	ci right 7.843536e-01	k: 46863	n:60000
KS ci ratio: 9.811050e-02	ci left: 2.464370e-02	ci right 2.720243e-02	k: 1554	n:60000
COL5A3   60000 perm   16 sec   (3786 perm/sec)   p_kst 2.590000e-02   p_cons 7.810500e-01   p_joint 6.031667e-02

Outputting figure to mutsig2_images.part000000000041/COL5A3.12_5506_60000_0.0259_0.78105_0.060317.png
                gene_name: COL5A3
               theta_stop: 0.098 
                    nperm: 60000 
                     p_ks: 0.026 
        ci_ks_bounds_left: 0.025 
       ci_ks_bounds_right: 0.027 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.060 
     ci_joint_bounds_left: 0.058 
    ci_joint_bounds_right: 0.062 

Current progress: 25 percent done.
COLEC12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.236599e-01	ci left: 2.646035e-02	ci right 3.321723e-02	k: 297	n:10000
Cons ci ratio: 4.477642e-02	ci left: 4.240569e-01	ci right 4.435817e-01	k: 4338	n:10000
KS ci ratio: 3.242904e-01	ci left: 1.206533e-02	ci right 1.682370e-02	k: 143	n:10000
COLEC12   10000 perm   2 sec   (4808 perm/sec)   p_kst 1.430000e-02   p_cons 4.338000e-01   p_joint 2.970000e-02

Joint ci ratio: 1.580186e-01	ci left: 2.748703e-02	ci right 3.225095e-02	k: 596	n:20000
Cons ci ratio: 3.186512e-02	ci left: 4.238229e-01	ci right 4.375973e-01	k: 8614	n:20000
KS ci ratio: 2.396559e-01	ci left: 1.161730e-02	ci right 1.482653e-02	k: 263	n:20000
COLEC12   20000 perm   5 sec   (4404 perm/sec)   p_kst 1.315000e-02   p_cons 4.307000e-01   p_joint 2.980000e-02

Joint ci ratio: 1.330994e-01	ci left: 2.622685e-02	ci right 2.999862e-02	k: 842	n:30000
Cons ci ratio: 2.663253e-02	ci left: 4.137076e-01	ci right 4.249080e-01	k: 12579	n:30000
KS ci ratio: 1.922644e-01	ci left: 1.235170e-02	ci right 1.501037e-02	k: 409	n:30000
COLEC12   30000 perm   7 sec   (4245 perm/sec)   p_kst 1.363333e-02   p_cons 4.193000e-01   p_joint 2.806667e-02

Joint ci ratio: 1.245242e-01	ci left: 2.266770e-02	ci right 2.570191e-02	k: 966	n:40000
Cons ci ratio: 2.303759e-02	ci left: 4.150319e-01	ci right 4.247298e-01	k: 16795	n:40000
KS ci ratio: 1.666096e-01	ci left: 1.251184e-02	ci right 1.480957e-02	k: 545	n:40000
COLEC12   40000 perm   10 sec   (4129 perm/sec)   p_kst 1.362500e-02   p_cons 4.198750e-01   p_joint 2.415000e-02

Joint ci ratio: 1.138517e-01	ci left: 2.183991e-02	ci right 2.449585e-02	k: 1157	n:50000
Cons ci ratio: 2.053621e-02	ci left: 4.171864e-01	ci right 4.258627e-01	k: 21076	n:50000
KS ci ratio: 1.501962e-01	ci left: 1.242976e-02	ci right 1.446731e-02	k: 671	n:50000
COLEC12   50000 perm   13 sec   (3973 perm/sec)   p_kst 1.342000e-02   p_cons 4.215200e-01   p_joint 2.314000e-02

Joint ci ratio: 9.949866e-02	ci left: 2.396058e-02	ci right 2.648563e-02	k: 1512	n:60000
Cons ci ratio: 1.870365e-02	ci left: 4.186929e-01	ci right 4.266146e-01	k: 25359	n:60000
KS ci ratio: 1.364596e-01	ci left: 1.264017e-02	ci right 1.450732e-02	k: 813	n:60000
COLEC12   60000 perm   15 sec   (3899 perm/sec)   p_kst 1.355000e-02   p_cons 4.226500e-01   p_joint 2.520000e-02

Joint ci ratio: 8.901499e-02	ci left: 2.575588e-02	ci right 2.816926e-02	k: 1886	n:70000
Cons ci ratio: 1.732009e-02	ci left: 4.188797e-01	ci right 4.262124e-01	k: 29578	n:70000
KS ci ratio: 1.259791e-01	ci left: 1.278273e-02	ci right 1.451507e-02	k: 954	n:70000
COLEC12   70000 perm   18 sec   (3848 perm/sec)   p_kst 1.362857e-02   p_cons 4.225429e-01   p_joint 2.694286e-02

Joint ci ratio: 8.178842e-02	ci left: 2.676970e-02	ci right 2.906471e-02	k: 2232	n:80000
Cons ci ratio: 1.621872e-02	ci left: 4.185993e-01	ci right 4.254564e-01	k: 33762	n:80000
KS ci ratio: 1.178662e-01	ci left: 1.283310e-02	ci right 1.445246e-02	k: 1090	n:80000
COLEC12   80000 perm   22 sec   (3717 perm/sec)   p_kst 1.362500e-02   p_cons 4.220250e-01   p_joint 2.790000e-02

Joint ci ratio: 7.978288e-02	ci left: 2.507903e-02	ci right 2.717389e-02	k: 2350	n:90000
Cons ci ratio: 1.526797e-02	ci left: 4.195362e-01	ci right 4.260021e-01	k: 38049	n:90000
KS ci ratio: 1.104150e-01	ci left: 1.304798e-02	ci right 1.458359e-02	k: 1242	n:90000
COLEC12   90000 perm   24 sec   (3679 perm/sec)   p_kst 1.380000e-02   p_cons 4.227667e-01   p_joint 2.611111e-02

Joint ci ratio: 7.021006e-02	ci left: 2.916760e-02	ci right 3.129976e-02	k: 3022	n:100000
Cons ci ratio: 1.448767e-02	ci left: 4.195956e-01	ci right 4.257289e-01	k: 42266	n:100000
KS ci ratio: 1.038046e-01	ci left: 1.332964e-02	ci right 1.479874e-02	k: 1405	n:100000
COLEC12   100000 perm   27 sec   (3639 perm/sec)   p_kst 1.405000e-02   p_cons 4.226600e-01   p_joint 3.022000e-02

Joint ci ratio: 6.729092e-02	ci left: 2.891929e-02	ci right 3.094196e-02	k: 3291	n:110000
Cons ci ratio: 1.381311e-02	ci left: 4.197510e-01	ci right 4.255985e-01	k: 46494	n:110000
KS ci ratio: 9.931961e-02	ci left: 1.326964e-02	ci right 1.466525e-02	k: 1535	n:110000
COLEC12   110000 perm   31 sec   (3600 perm/sec)   p_kst 1.395455e-02   p_cons 4.226727e-01   p_joint 2.991818e-02

Outputting figure to mutsig2_images.part000000000041/COLEC12.12_2269_110000_0.013955_0.42267_0.029918.png
                gene_name: COLEC12
               theta_stop: 0.099 
                    nperm: 110000 
                     p_ks: 0.014 
        ci_ks_bounds_left: 0.013 
       ci_ks_bounds_right: 0.015 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.030 
     ci_joint_bounds_left: 0.029 
    ci_joint_bounds_right: 0.031 

Current progress: 27 percent done.
COL15A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.270466e-02	ci left: 8.990845e-01	ci right 9.106784e-01	k: 9050	n:10000
Cons ci ratio: 3.767188e-02	ci left: 5.099533e-01	ci right 5.296352e-01	k: 5198	n:10000
KS ci ratio: 8.103232e-03	ci left: 9.550321e-01	ci right 9.628976e-01	k: 9591	n:10000
COL15A1   10000 perm   2 sec   (4723 perm/sec)   p_kst 9.591000e-01   p_cons 5.198000e-01   p_joint 9.050000e-01

Outputting figure to mutsig2_images.part000000000041/COL15A1.11_4335_10000_0.9591_0.5198_0.905.png
                gene_name: COL15A1
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 29 percent done.
COL1A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.872833e-02	ci left: 3.832104e-01	ci right 4.024520e-01	k: 3928	n:10000
Cons ci ratio: 8.383558e-02	ci left: 1.718257e-01	ci right 1.869615e-01	k: 1793	n:10000
KS ci ratio: 1.772965e-02	ci left: 8.226953e-01	ci right 8.375119e-01	k: 8302	n:10000
COL1A1   10000 perm   2 sec   (4878 perm/sec)   p_kst 8.302000e-01   p_cons 1.793000e-01   p_joint 3.928000e-01

Outputting figure to mutsig2_images.part000000000041/COL1A1.11_4599_10000_0.8302_0.1793_0.3928.png
                gene_name: COL1A1
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 31 percent done.
COL4A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.566848e-02	ci left: 5.371811e-01	ci right 5.567915e-01	k: 5470	n:10000
Cons ci ratio: 8.151886e-02	ci left: 1.800887e-01	ci right 1.954937e-01	k: 1877	n:10000
KS ci ratio: 1.747765e-02	ci left: 8.267638e-01	ci right 8.414410e-01	k: 8342	n:10000
COL4A4   10000 perm   2 sec   (4266 perm/sec)   p_kst 8.342000e-01   p_cons 1.877000e-01   p_joint 5.470000e-01

Outputting figure to mutsig2_images.part000000000041/COL4A4.11_5261_10000_0.8342_0.1877_0.547.png
                gene_name: COL4A4
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 33 percent done.
COL4A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.002490e-01	ci left: 7.602648e-03	ci right 1.149110e-02	k: 94	n:10000
Cons ci ratio: 9.675168e-02	ci left: 1.341362e-01	ci right 1.478736e-01	k: 1409	n:10000
KS ci ratio: 3.602602e-01	ci left: 9.594514e-03	ci right 1.389697e-02	k: 116	n:10000
COL4A2   10000 perm   2 sec   (4882 perm/sec)   p_kst 1.160000e-02   p_cons 1.409000e-01   p_joint 9.400000e-03

Joint ci ratio: 3.453633e-01	ci left: 5.296378e-03	ci right 7.550737e-03	k: 127	n:20000
Cons ci ratio: 6.869877e-02	ci left: 1.351694e-01	ci right 1.448355e-01	k: 2799	n:20000
KS ci ratio: 2.313597e-01	ci left: 1.251190e-02	ci right 1.583155e-02	k: 282	n:20000
COL4A2   20000 perm   4 sec   (4462 perm/sec)   p_kst 1.410000e-02   p_cons 1.399500e-01   p_joint 6.350000e-03

Joint ci ratio: 2.142673e-01	ci left: 9.850602e-03	ci right 1.224550e-02	k: 330	n:30000
Cons ci ratio: 5.607710e-02	ci left: 1.361248e-01	ci right 1.440117e-01	k: 4201	n:30000
KS ci ratio: 1.887932e-01	ci left: 1.282815e-02	ci right 1.553381e-02	k: 424	n:30000
COL4A2   30000 perm   7 sec   (4191 perm/sec)   p_kst 1.413333e-02   p_cons 1.400333e-01   p_joint 1.100000e-02

Joint ci ratio: 1.988155e-01	ci left: 8.667670e-03	ci right 1.060452e-02	k: 384	n:40000
Cons ci ratio: 4.841704e-02	ci left: 1.373804e-01	ci right 1.442218e-01	k: 5631	n:40000
KS ci ratio: 1.615828e-01	ci left: 1.332738e-02	ci right 1.569388e-02	k: 579	n:40000
COL4A2   40000 perm   10 sec   (4104 perm/sec)   p_kst 1.447500e-02   p_cons 1.407750e-01   p_joint 9.600000e-03

Joint ci ratio: 1.492980e-01	ci left: 1.258383e-02	ci right 1.463321e-02	k: 679	n:50000
Cons ci ratio: 4.315588e-02	ci left: 1.385748e-01	ci right 1.447069e-01	k: 7081	n:50000
KS ci ratio: 1.451350e-01	ci left: 1.333547e-02	ci right 1.544146e-02	k: 718	n:50000
COL4A2   50000 perm   13 sec   (3955 perm/sec)   p_kst 1.436000e-02   p_cons 1.416200e-01   p_joint 1.358000e-02

Joint ci ratio: 1.525632e-01	ci left: 1.005250e-02	ci right 1.172865e-02	k: 652	n:60000
Cons ci ratio: 3.953518e-02	ci left: 1.379930e-01	ci right 1.435751e-01	k: 8446	n:60000
KS ci ratio: 1.315493e-01	ci left: 1.362320e-02	ci right 1.555750e-02	k: 874	n:60000
COL4A2   60000 perm   15 sec   (3896 perm/sec)   p_kst 1.456667e-02   p_cons 1.407667e-01   p_joint 1.086667e-02

Joint ci ratio: 1.195432e-01	ci left: 1.422346e-02	ci right 1.604563e-02	k: 1058	n:70000
Cons ci ratio: 3.594669e-02	ci left: 1.425978e-01	ci right 1.478317e-01	k: 10164	n:70000
KS ci ratio: 1.205293e-01	ci left: 1.398779e-02	ci right 1.579561e-02	k: 1041	n:70000
COL4A2   70000 perm   18 sec   (3839 perm/sec)   p_kst 1.487143e-02   p_cons 1.452000e-01   p_joint 1.511429e-02

Joint ci ratio: 1.238751e-01	ci left: 1.159616e-02	ci right 1.313950e-02	k: 988	n:80000
Cons ci ratio: 3.352914e-02	ci left: 1.434729e-01	ci right 1.483778e-01	k: 11673	n:80000
KS ci ratio: 1.133677e-01	ci left: 1.388957e-02	ci right 1.557089e-02	k: 1177	n:80000
COL4A2   80000 perm   21 sec   (3787 perm/sec)   p_kst 1.471250e-02   p_cons 1.459125e-01   p_joint 1.235000e-02

Joint ci ratio: 1.089576e-01	ci left: 1.340472e-02	ci right 1.496016e-02	k: 1275	n:90000
Cons ci ratio: 3.156131e-02	ci left: 1.440080e-01	ci right 1.486370e-01	k: 13168	n:90000
KS ci ratio: 1.068944e-01	ci left: 1.393467e-02	ci right 1.551906e-02	k: 1324	n:90000
COL4A2   90000 perm   24 sec   (3734 perm/sec)   p_kst 1.471111e-02   p_cons 1.463111e-01   p_joint 1.416667e-02

Joint ci ratio: 1.287834e-01	ci left: 8.588481e-03	ci right 9.780248e-03	k: 917	n:100000
Cons ci ratio: 3.046332e-02	ci left: 1.398917e-01	ci right 1.442291e-01	k: 14205	n:100000
KS ci ratio: 1.019098e-01	ci left: 1.383644e-02	ci right 1.533191e-02	k: 1457	n:100000
COL4A2   100000 perm   27 sec   (3681 perm/sec)   p_kst 1.457000e-02   p_cons 1.420500e-01   p_joint 9.170000e-03

Joint ci ratio: 1.327583e-01	ci left: 7.341333e-03	ci right 8.393954e-03	k: 864	n:110000
Cons ci ratio: 2.909840e-02	ci left: 1.395537e-01	ci right 1.436834e-01	k: 15577	n:110000
KS ci ratio: 9.676390e-02	ci left: 1.398819e-02	ci right 1.541938e-02	k: 1616	n:110000
COL4A2   110000 perm   30 sec   (3636 perm/sec)   p_kst 1.469091e-02   p_cons 1.416091e-01   p_joint 7.854545e-03

Joint ci ratio: 1.319597e-01	ci left: 6.818064e-03	ci right 7.789308e-03	k: 875	n:120000
Cons ci ratio: 2.787507e-02	ci left: 1.395077e-01	ci right 1.434597e-01	k: 16977	n:120000
KS ci ratio: 9.285836e-02	ci left: 1.395337e-02	ci right 1.532023e-02	k: 1755	n:120000
COL4A2   120000 perm   33 sec   (3594 perm/sec)   p_kst 1.462500e-02   p_cons 1.414750e-01   p_joint 7.291667e-03

Joint ci ratio: 1.277354e-01	ci left: 6.732683e-03	ci right 7.658734e-03	k: 934	n:130000
Cons ci ratio: 2.676103e-02	ci left: 1.397702e-01	ci right 1.435689e-01	k: 18416	n:130000
KS ci ratio: 8.927103e-02	ci left: 1.396250e-02	ci right 1.527466e-02	k: 1899	n:130000
COL4A2   130000 perm   37 sec   (3552 perm/sec)   p_kst 1.460769e-02   p_cons 1.416615e-01   p_joint 7.184615e-03

Joint ci ratio: 1.278373e-01	ci left: 6.244762e-03	ci right 7.104433e-03	k: 933	n:140000
Cons ci ratio: 2.578810e-02	ci left: 1.398344e-01	ci right 1.434947e-01	k: 19832	n:140000
KS ci ratio: 8.539389e-02	ci left: 1.419495e-02	ci right 1.546812e-02	k: 2075	n:140000
COL4A2   140000 perm   40 sec   (3510 perm/sec)   p_kst 1.482143e-02   p_cons 1.416571e-01   p_joint 6.664286e-03

Joint ci ratio: 1.248738e-01	ci left: 6.118937e-03	ci right 6.940313e-03	k: 978	n:150000
Cons ci ratio: 2.496959e-02	ci left: 1.393552e-01	ci right 1.428854e-01	k: 21167	n:150000
KS ci ratio: 8.274956e-02	ci left: 1.412967e-02	ci right 1.535585e-02	k: 2210	n:150000
COL4A2   150000 perm   43 sec   (3469 perm/sec)   p_kst 1.473333e-02   p_cons 1.411133e-01   p_joint 6.520000e-03

Joint ci ratio: 1.043443e-01	ci left: 8.287282e-03	ci right 9.205652e-03	k: 1398	n:160000
Cons ci ratio: 2.419180e-02	ci left: 1.392608e-01	ci right 1.426772e-01	k: 22554	n:160000
KS ci ratio: 8.030183e-02	ci left: 1.408535e-02	ci right 1.526983e-02	k: 2347	n:160000
COL4A2   160000 perm   47 sec   (3429 perm/sec)   p_kst 1.466875e-02   p_cons 1.409625e-01   p_joint 8.737500e-03

Joint ci ratio: 1.030429e-01	ci left: 8.006007e-03	ci right 8.881469e-03	k: 1434	n:170000
Cons ci ratio: 2.348073e-02	ci left: 1.391966e-01	ci right 1.425097e-01	k: 23944	n:170000
KS ci ratio: 7.778960e-02	ci left: 1.414479e-02	ci right 1.529537e-02	k: 2501	n:170000
COL4A2   170000 perm   50 sec   (3389 perm/sec)   p_kst 1.471176e-02   p_cons 1.408471e-01   p_joint 8.435294e-03

Joint ci ratio: 1.026356e-01	ci left: 7.626104e-03	ci right 8.456525e-03	k: 1446	n:180000
Cons ci ratio: 2.282154e-02	ci left: 1.392183e-01	ci right 1.424377e-01	k: 25348	n:180000
KS ci ratio: 7.564395e-02	ci left: 1.414362e-02	ci right 1.526098e-02	k: 2645	n:180000
COL4A2   180000 perm   54 sec   (3351 perm/sec)   p_kst 1.469444e-02   p_cons 1.408222e-01   p_joint 8.033333e-03

Joint ci ratio: 1.031978e-01	ci left: 7.147724e-03	ci right 7.930572e-03	k: 1431	n:190000
Cons ci ratio: 2.223815e-02	ci left: 1.389875e-01	ci right 1.421182e-01	k: 26704	n:190000
KS ci ratio: 7.389541e-02	ci left: 1.405512e-02	ci right 1.513871e-02	k: 2772	n:190000
COL4A2   190000 perm   57 sec   (3312 perm/sec)   p_kst 1.458947e-02   p_cons 1.405474e-01   p_joint 7.531579e-03

Joint ci ratio: 1.032901e-01	ci left: 6.780529e-03	ci right 7.523863e-03	k: 1429	n:200000
Cons ci ratio: 2.167710e-02	ci left: 1.390046e-01	ci right 1.420558e-01	k: 28105	n:200000
KS ci ratio: 7.182419e-02	ci left: 1.414763e-02	ci right 1.520651e-02	k: 2934	n:200000
COL4A2   200000 perm   61 sec   (3274 perm/sec)   p_kst 1.467000e-02   p_cons 1.405250e-01   p_joint 7.145000e-03

Joint ci ratio: 1.010213e-01	ci left: 6.759259e-03	ci right 7.483018e-03	k: 1494	n:210000
Cons ci ratio: 2.112484e-02	ci left: 1.393814e-01	ci right 1.423619e-01	k: 29582	n:210000
KS ci ratio: 7.013656e-02	ci left: 1.414280e-02	ci right 1.517543e-02	k: 3077	n:210000
COL4A2   210000 perm   65 sec   (3236 perm/sec)   p_kst 1.465238e-02   p_cons 1.408667e-01   p_joint 7.114286e-03

Joint ci ratio: 9.484638e-02	ci left: 7.338964e-03	ci right 8.074096e-03	k: 1694	n:220000
Cons ci ratio: 2.063826e-02	ci left: 1.394260e-01	ci right 1.423380e-01	k: 30993	n:220000
KS ci ratio: 6.841183e-02	ci left: 1.420123e-02	ci right 1.521161e-02	k: 3234	n:220000
COL4A2   220000 perm   69 sec   (3200 perm/sec)   p_kst 1.470000e-02   p_cons 1.408773e-01   p_joint 7.700000e-03

Outputting figure to mutsig2_images.part000000000041/COL4A2.10_5327_220000_0.0147_0.14088_0.0077.png
                gene_name: COL4A2
               theta_stop: 0.095 
                    nperm: 220000 
                     p_ks: 0.015 
        ci_ks_bounds_left: 0.014 
       ci_ks_bounds_right: 0.015 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.0077 
     ci_joint_bounds_left: 0.0073 
    ci_joint_bounds_right: 0.0081 

Current progress: 35 percent done.
COL4A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.526734e-02	ci left: 5.427904e-01	ci right 5.623789e-01	k: 5526	n:10000
KS ci ratio: 2.319292e-02	ci left: 7.319911e-01	ci right 7.492685e-01	k: 7407	n:10000
COL4A1   10000 perm   2 sec   (4530 perm/sec)   p_kst 7.407000e-01   p_cons 5.526000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000041/COL4A1.9_5218_10000_0.7407_0.5526_1.png
                gene_name: COL4A1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 36 percent done.
COL4A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.336175e-02	ci left: 2.679478e-01	ci right 2.855824e-01	k: 2767	n:10000
Cons ci ratio: 4.994475e-02	ci left: 3.715671e-01	ci right 3.907022e-01	k: 3811	n:10000
KS ci ratio: 9.859073e-02	ci left: 1.297297e-01	ci right 1.432828e-01	k: 1364	n:10000
COL4A3   10000 perm   2 sec   (4457 perm/sec)   p_kst 1.364000e-01   p_cons 3.811000e-01   p_joint 2.767000e-01

Outputting figure to mutsig2_images.part000000000041/COL4A3.9_5295_10000_0.1364_0.3811_0.2767.png
                gene_name: COL4A3
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 38 percent done.
COL9A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.775266e-02	ci left: 3.061982e-01	ci right 3.245095e-01	k: 3153	n:10000
Cons ci ratio: 6.979389e-02	ci left: 2.313597e-01	ci right 2.481922e-01	k: 2397	n:10000
KS ci ratio: 3.657741e-02	ci left: 5.246647e-01	ci right 5.443152e-01	k: 5345	n:10000
COL9A1   10000 perm   2 sec   (5068 perm/sec)   p_kst 5.345000e-01   p_cons 2.397000e-01   p_joint 3.153000e-01

Outputting figure to mutsig2_images.part000000000041/COL9A1.9_2994_10000_0.5345_0.2397_0.3153.png
                gene_name: COL9A1
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 40 percent done.
COL20A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.789910e-02	ci left: 8.199499e-01	ci right 8.348589e-01	k: 8275	n:10000
Cons ci ratio: 1.242219e-02	ci left: 9.029877e-01	ci right 9.143730e-01	k: 9088	n:10000
KS ci ratio: 2.844091e-02	ci left: 6.456895e-01	ci right 6.644201e-01	k: 6551	n:10000
COL20A1   10000 perm   2 sec   (4883 perm/sec)   p_kst 6.551000e-01   p_cons 9.088000e-01   p_joint 8.275000e-01

Outputting figure to mutsig2_images.part000000000041/COL20A1.8_3933_10000_0.6551_0.9088_0.8275.png
                gene_name: COL20A1
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 42 percent done.
COL4A6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.085144e-02	ci left: 4.694658e-01	ci right 4.891463e-01	k: 4793	n:10000
Cons ci ratio: 3.892077e-02	ci left: 4.936506e-01	ci right 5.133474e-01	k: 5035	n:10000
KS ci ratio: 6.628658e-02	ci left: 2.504348e-01	ci right 2.677057e-01	k: 2590	n:10000
COL4A6   10000 perm   2 sec   (4703 perm/sec)   p_kst 2.590000e-01   p_cons 5.035000e-01   p_joint 4.793000e-01

Outputting figure to mutsig2_images.part000000000041/COL4A6.8_5271_10000_0.259_0.5035_0.4793.png
                gene_name: COL4A6
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 44 percent done.
COPA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.020807e-02	ci left: 2.886490e-01	ci right 3.066690e-01	k: 2976	n:10000
Cons ci ratio: 5.752610e-02	ci left: 3.078845e-01	ci right 3.262222e-01	k: 3170	n:10000
KS ci ratio: 5.837354e-02	ci left: 3.016359e-01	ci right 3.198745e-01	k: 3107	n:10000
COPA   10000 perm   2 sec   (4892 perm/sec)   p_kst 3.107000e-01   p_cons 3.170000e-01   p_joint 2.976000e-01

Outputting figure to mutsig2_images.part000000000041/COPA.8_3834_10000_0.3107_0.317_0.2976.png
                gene_name: COPA
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 45 percent done.
COL13A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.982218e-02	ci left: 1.268913e-01	ci right 1.403229e-01	k: 1335	n:10000
Cons ci ratio: 1.857837e-02	ci left: 8.088732e-01	ci right 8.241419e-01	k: 8166	n:10000
KS ci ratio: 1.454625e-01	ci left: 6.275582e-02	ci right 7.269780e-02	k: 676	n:10000
COL13A1   10000 perm   2 sec   (5628 perm/sec)   p_kst 6.760000e-02   p_cons 8.166000e-01   p_joint 1.335000e-01

Joint ci ratio: 7.463747e-02	ci left: 1.166581e-01	ci right 1.257524e-01	k: 2423	n:20000
Cons ci ratio: 1.260063e-02	ci left: 8.234562e-01	ci right 8.339480e-01	k: 16575	n:20000
KS ci ratio: 1.039761e-01	ci left: 6.289002e-02	ci right 6.983670e-02	k: 1326	n:20000
COL13A1   20000 perm   4 sec   (5085 perm/sec)   p_kst 6.630000e-02   p_cons 8.287500e-01   p_joint 1.211500e-01

Joint ci ratio: 5.483868e-02	ci left: 1.415278e-01	ci right 1.495410e-01	k: 4365	n:30000
Cons ci ratio: 1.025379e-02	ci left: 8.253979e-01	ci right 8.339382e-01	k: 24891	n:30000
KS ci ratio: 8.427486e-02	ci left: 6.442489e-02	ci right 7.012592e-02	k: 2017	n:30000
COL13A1   30000 perm   6 sec   (4870 perm/sec)   p_kst 6.723333e-02   p_cons 8.297000e-01   p_joint 1.455000e-01

Outputting figure to mutsig2_images.part000000000041/COL13A1.7_2314_30000_0.067233_0.8297_0.1455.png
                gene_name: COL13A1
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.067 
        ci_ks_bounds_left: 0.064 
       ci_ks_bounds_right: 0.070 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 47 percent done.
COL14A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.332907e-01	ci left: 7.427098e-02	ci right 8.497542e-02	k: 795	n:10000
Cons ci ratio: 1.721807e-02	ci left: 8.309356e-01	ci right 8.454668e-01	k: 8383	n:10000
KS ci ratio: 2.499682e-01	ci left: 2.099569e-02	ci right 2.708592e-02	k: 239	n:10000
COL14A1   10000 perm   2 sec   (4485 perm/sec)   p_kst 2.390000e-02   p_cons 8.383000e-01   p_joint 7.950000e-02

Joint ci ratio: 1.026566e-01	ci left: 6.445142e-02	ci right 7.147482e-02	k: 1358	n:20000
Cons ci ratio: 1.216768e-02	ci left: 8.332752e-01	ci right 8.435262e-01	k: 16769	n:20000
KS ci ratio: 1.741732e-01	ci left: 2.254539e-02	ci right 2.689429e-02	k: 493	n:20000
COL14A1   20000 perm   5 sec   (4084 perm/sec)   p_kst 2.465000e-02   p_cons 8.384500e-01   p_joint 6.790000e-02

Joint ci ratio: 9.585679e-02	ci left: 5.026355e-02	ci right 5.535683e-02	k: 1583	n:30000
Cons ci ratio: 9.834912e-03	ci left: 8.369808e-01	ci right 8.452863e-01	k: 25235	n:30000
KS ci ratio: 1.437114e-01	ci left: 2.245846e-02	ci right 2.596784e-02	k: 725	n:30000
COL14A1   30000 perm   8 sec   (3940 perm/sec)   p_kst 2.416667e-02   p_cons 8.411667e-01   p_joint 5.276667e-02

Joint ci ratio: 9.645934e-02	ci left: 3.773427e-02	ci right 4.158293e-02	k: 1585	n:40000
Cons ci ratio: 8.569471e-03	ci left: 8.358909e-01	ci right 8.431097e-01	k: 33581	n:40000
KS ci ratio: 1.247889e-01	ci left: 2.257075e-02	ci right 2.559888e-02	k: 962	n:40000
COL14A1   40000 perm   10 sec   (3848 perm/sec)   p_kst 2.405000e-02   p_cons 8.395250e-01   p_joint 3.962500e-02

Joint ci ratio: 8.760751e-02	ci left: 3.681083e-02	ci right 4.020302e-02	k: 1924	n:50000
Cons ci ratio: 7.717143e-03	ci left: 8.344183e-01	ci right 8.409025e-01	k: 41884	n:50000
KS ci ratio: 1.124189e-01	ci left: 2.240385e-02	ci right 2.509183e-02	k: 1186	n:50000
COL14A1   50000 perm   13 sec   (3767 perm/sec)   p_kst 2.372000e-02   p_cons 8.376800e-01   p_joint 3.848000e-02

Joint ci ratio: 7.484744e-02	ci left: 4.207805e-02	ci right 4.536627e-02	k: 2622	n:60000
Cons ci ratio: 7.044214e-03	ci left: 8.347250e-01	ci right 8.406423e-01	k: 50262	n:60000
KS ci ratio: 1.029727e-01	ci left: 2.236763e-02	ci right 2.481208e-02	k: 1414	n:60000
COL14A1   60000 perm   16 sec   (3696 perm/sec)   p_kst 2.356667e-02   p_cons 8.377000e-01   p_joint 4.370000e-02

Joint ci ratio: 7.235532e-02	ci left: 3.878489e-02	ci right 4.171052e-02	k: 2816	n:70000
Cons ci ratio: 6.497662e-03	ci left: 8.359541e-01	ci right 8.414178e-01	k: 58709	n:70000
KS ci ratio: 9.550724e-02	ci left: 2.237649e-02	ci right 2.463467e-02	k: 1644	n:70000
COL14A1   70000 perm   19 sec   (3635 perm/sec)   p_kst 2.348571e-02   p_cons 8.387000e-01   p_joint 4.022857e-02

Outputting figure to mutsig2_images.part000000000041/COL14A1.7_5579_70000_0.023486_0.8387_0.040229.png
                gene_name: COL14A1
               theta_stop: 0.096 
                    nperm: 70000 
                     p_ks: 0.023 
        ci_ks_bounds_left: 0.022 
       ci_ks_bounds_right: 0.025 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.040 
     ci_joint_bounds_left: 0.039 
    ci_joint_bounds_right: 0.042 

Current progress: 49 percent done.
COL5A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.941013e-02	ci left: 6.303014e-01	ci right 6.492171e-01	k: 6398	n:10000
KS ci ratio: 1.378463e-02	ci left: 8.837035e-01	ci right 8.960683e-01	k: 8900	n:10000
COL5A1   10000 perm   2 sec   (4440 perm/sec)   p_kst 8.900000e-01   p_cons 6.398000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000041/COL5A1.7_5781_10000_0.89_0.6398_1.png
                gene_name: COL5A1
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 51 percent done.
COL21A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.571888e-02	ci left: 5.364800e-01	ci right 5.560930e-01	k: 5463	n:10000
KS ci ratio: 1.805555e-02	ci left: 8.174085e-01	ci right 8.324018e-01	k: 8250	n:10000
COL21A1   10000 perm   2 sec   (5515 perm/sec)   p_kst 8.250000e-01   p_cons 5.463000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000041/COL21A1.6_2990_10000_0.825_0.5463_1.png
                gene_name: COL21A1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 53 percent done.
COL27A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.721745e-02	ci left: 1.969273e-01	ci right 2.128450e-01	k: 2048	n:10000
Cons ci ratio: 1.670107e-02	ci left: 8.391823e-01	ci right 8.534153e-01	k: 8464	n:10000
KS ci ratio: 1.146253e-01	ci left: 9.866755e-02	ci right 1.107638e-01	k: 1046	n:10000
COL27A1   10000 perm   2 sec   (4585 perm/sec)   p_kst 1.046000e-01   p_cons 8.464000e-01   p_joint 2.048000e-01

Joint ci ratio: 5.078806e-02	ci left: 2.236372e-01	ci right 2.353415e-01	k: 4589	n:20000
Cons ci ratio: 1.191074e-02	ci left: 8.390482e-01	ci right 8.491516e-01	k: 16883	n:20000
KS ci ratio: 8.173122e-02	ci left: 9.891852e-02	ci right 1.073972e-01	k: 2062	n:20000
COL27A1   20000 perm   5 sec   (4176 perm/sec)   p_kst 1.031000e-01   p_cons 8.441500e-01   p_joint 2.294500e-01

Outputting figure to mutsig2_images.part000000000041/COL27A1.6_5826_20000_0.1031_0.84415_0.22945.png
                gene_name: COL27A1
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.099 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 55 percent done.
COL6A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.077635e-02	ci left: 7.724591e-01	ci right 7.887771e-01	k: 7807	n:10000
KS ci ratio: 1.542238e-02	ci left: 8.591667e-01	ci right 8.726194e-01	k: 8660	n:10000
COL6A2   10000 perm   2 sec   (5237 perm/sec)   p_kst 8.660000e-01   p_cons 7.807000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000041/COL6A2.6_3498_10000_0.866_0.7807_1.png
                gene_name: COL6A2
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 56 percent done.
COL8A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.017199e-01	ci left: 1.226845e-01	ci right 1.359322e-01	k: 1292	n:10000
Cons ci ratio: 6.480061e-02	ci left: 2.591396e-01	ci right 2.765958e-01	k: 2678	n:10000
KS ci ratio: 1.368725e-01	ci left: 7.058968e-02	ci right 8.105902e-02	k: 757	n:10000
COL8A1   10000 perm   2 sec   (5488 perm/sec)   p_kst 7.570000e-02   p_cons 2.678000e-01   p_joint 1.292000e-01

Joint ci ratio: 8.459497e-02	ci left: 9.283400e-02	ci right 1.010836e-01	k: 1938	n:20000
Cons ci ratio: 4.689647e-02	ci left: 2.527901e-01	ci right 2.649801e-01	k: 5177	n:20000
KS ci ratio: 9.812251e-02	ci left: 7.026263e-02	ci right 7.756183e-02	k: 1477	n:20000
COL8A1   20000 perm   4 sec   (4979 perm/sec)   p_kst 7.385000e-02   p_cons 2.588500e-01   p_joint 9.690000e-02

Outputting figure to mutsig2_images.part000000000041/COL8A1.6_2243_20000_0.07385_0.25885_0.0969.png
                gene_name: COL8A1
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.074 
        ci_ks_bounds_left: 0.070 
       ci_ks_bounds_right: 0.078 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.097 
     ci_joint_bounds_left: 0.093 
    ci_joint_bounds_right: 0.10 

Current progress: 58 percent done.
COL25A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.021896e-02	ci left: 6.176367e-01	ci right 6.366892e-01	k: 6272	n:10000
Cons ci ratio: 3.514628e-02	ci left: 5.444935e-01	ci right 5.640749e-01	k: 5543	n:10000
KS ci ratio: 4.912899e-02	ci left: 3.793287e-01	ci right 3.985361e-01	k: 3889	n:10000
COL25A1   10000 perm   2 sec   (5746 perm/sec)   p_kst 3.889000e-01   p_cons 5.543000e-01   p_joint 6.272000e-01

Outputting figure to mutsig2_images.part000000000041/COL25A1.5_2193_10000_0.3889_0.5543_0.6272.png
                gene_name: COL25A1
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 60 percent done.
COL17A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.134726e-02	ci left: 6.002590e-01	ci right 6.194770e-01	k: 6099	n:10000
Cons ci ratio: 6.239472e-02	ci left: 2.740864e-01	ci right 2.918402e-01	k: 2829	n:10000
KS ci ratio: 6.461939e-02	ci left: 2.602281e-01	ci right 2.777067e-01	k: 2689	n:10000
COL17A1   10000 perm   2 sec   (4979 perm/sec)   p_kst 2.689000e-01   p_cons 2.829000e-01   p_joint 6.099000e-01

Outputting figure to mutsig2_images.part000000000041/COL17A1.4_4714_10000_0.2689_0.2829_0.6099.png
                gene_name: COL17A1
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 62 percent done.
COL23A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.624268e-02	ci left: 6.813348e-01	ci right 6.995541e-01	k: 6905	n:10000
Cons ci ratio: 1.990641e-02	ci left: 7.869522e-01	ci right 8.028756e-01	k: 7950	n:10000
KS ci ratio: 4.027488e-02	ci left: 4.765590e-01	ci right 4.962490e-01	k: 4864	n:10000
COL23A1   10000 perm   2 sec   (6352 perm/sec)   p_kst 4.864000e-01   p_cons 7.950000e-01   p_joint 6.905000e-01

Outputting figure to mutsig2_images.part000000000041/COL23A1.4_1739_10000_0.4864_0.795_0.6905.png
                gene_name: COL23A1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 64 percent done.
COLEC11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.312653e-02	ci left: 7.331027e-01	ci right 7.503563e-01	k: 7418	n:10000
Cons ci ratio: 4.271375e-02	ci left: 4.473000e-01	ci right 4.669250e-01	k: 4571	n:10000
KS ci ratio: 3.462305e-02	ci left: 5.519083e-01	ci right 5.714558e-01	k: 5617	n:10000
COLEC11   10000 perm   2 sec   (6161 perm/sec)   p_kst 5.617000e-01   p_cons 4.571000e-01   p_joint 7.418000e-01

Outputting figure to mutsig2_images.part000000000041/COLEC11.4_923_10000_0.5617_0.4571_0.7418.png
                gene_name: COLEC11
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 65 percent done.
COG7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.092251e-02	ci left: 2.256317e-01	ci right 2.423235e-01	k: 2339	n:10000
KS ci ratio: 2.033296e-02	ci left: 7.798558e-01	ci right 7.959761e-01	k: 7880	n:10000
COG7   10000 perm   2 sec   (6024 perm/sec)   p_kst 7.880000e-01   p_cons 2.339000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000041/COG7.3_2381_10000_0.788_0.2339_1.png
                gene_name: COG7
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
COL16A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.839213e-02	ci left: 8.119208e-01	ci right 8.270926e-01	k: 8196	n:10000
KS ci ratio: 2.306014e-02	ci left: 7.342143e-01	ci right 7.514440e-01	k: 7429	n:10000
COL16A1   10000 perm   2 sec   (5034 perm/sec)   p_kst 7.429000e-01   p_cons 8.196000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000041/COL16A1.3_5095_10000_0.7429_0.8196_1.png
                gene_name: COL16A1
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 69 percent done.
COL28A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.661417e-02	ci left: 5.241642e-01	ci right 5.438160e-01	k: 5340	n:10000
KS ci ratio: 3.977048e-02	ci left: 4.828546e-01	ci right 5.025497e-01	k: 4927	n:10000
COL28A1   10000 perm   2 sec   (5591 perm/sec)   p_kst 4.927000e-01   p_cons 5.340000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000041/COL28A1.3_3514_10000_0.4927_0.534_1.png
                gene_name: COL28A1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
COL4A3BP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.866711e-02	ci left: 3.838077e-01	ci right 4.030544e-01	k: 3934	n:10000
Cons ci ratio: 2.354312e-02	ci left: 7.261314e-01	ci right 7.435316e-01	k: 7349	n:10000
KS ci ratio: 5.990708e-02	ci left: 2.907303e-01	ci right 3.087865e-01	k: 2997	n:10000
COL4A3BP   10000 perm   2 sec   (6113 perm/sec)   p_kst 2.997000e-01   p_cons 7.349000e-01   p_joint 3.934000e-01

Outputting figure to mutsig2_images.part000000000041/COL4A3BP.3_2331_10000_0.2997_0.7349_0.3934.png
                gene_name: COL4A3BP
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 73 percent done.
COPB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.946770e-02	ci left: 2.938030e-01	ci right 3.119119e-01	k: 3028	n:10000
Cons ci ratio: 9.723386e-02	ci left: 1.329609e-01	ci right 1.466496e-01	k: 1397	n:10000
KS ci ratio: 6.568770e-02	ci left: 2.538964e-01	ci right 2.712421e-01	k: 2625	n:10000
COPB1   10000 perm   2 sec   (5708 perm/sec)   p_kst 2.625000e-01   p_cons 1.397000e-01   p_joint 3.028000e-01

Outputting figure to mutsig2_images.part000000000041/COPB1.3_2946_10000_0.2625_0.1397_0.3028.png
                gene_name: COPB1
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 75 percent done.
COPB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.726746e-02	ci left: 2.448978e-01	ci right 2.620461e-01	k: 2534	n:10000
KS ci ratio: 1.293953e-02	ci left: 8.957999e-01	ci right 9.075649e-01	k: 9018	n:10000
COPB2   10000 perm   2 sec   (5891 perm/sec)   p_kst 9.018000e-01   p_cons 2.534000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000041/COPB2.3_2809_10000_0.9018_0.2534_1.png
                gene_name: COPB2
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
COPG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.996985e-02	ci left: 4.803561e-01	ci right 5.000496e-01	k: 4902	n:10000
KS ci ratio: 5.091734e-03	ci left: 9.808076e-01	ci right 9.859052e-01	k: 9835	n:10000
COPG   10000 perm   2 sec   (5806 perm/sec)   p_kst 9.835000e-01   p_cons 4.902000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000041/COPG.3_2721_10000_0.9835_0.4902_1.png
                gene_name: COPG
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
COIL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.102021e-02	ci left: 3.616201e-01	ci right 3.806550e-01	k: 3711	n:10000
Cons ci ratio: 4.146189e-02	ci left: 4.620751e-01	ci right 4.817413e-01	k: 4719	n:10000
KS ci ratio: 8.805305e-02	ci left: 1.580679e-01	ci right 1.727275e-01	k: 1653	n:10000
COIL   10000 perm   1 sec   (6786 perm/sec)   p_kst 1.653000e-01   p_cons 4.719000e-01   p_joint 3.711000e-01

Outputting figure to mutsig2_images.part000000000041/COIL.2_1759_10000_0.1653_0.4719_0.3711.png
                gene_name: COIL
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 80 percent done.
COL4A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.931866e-02	ci left: 2.338293e-01	ci right 2.507211e-01	k: 2422	n:10000
Cons ci ratio: 8.624746e-02	ci left: 1.637654e-01	ci right 1.786266e-01	k: 1711	n:10000
KS ci ratio: 5.537902e-02	ci left: 3.244576e-01	ci right 3.430393e-01	k: 3337	n:10000
COL4A5   10000 perm   2 sec   (5279 perm/sec)   p_kst 3.337000e-01   p_cons 1.711000e-01   p_joint 2.422000e-01

Outputting figure to mutsig2_images.part000000000041/COL4A5.2_5273_10000_0.3337_0.1711_0.2422.png
                gene_name: COL4A5
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 82 percent done.
COL8A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.567324e-02	ci left: 6.907094e-01	ci right 7.087742e-01	k: 6998	n:10000
KS ci ratio: 8.038774e-02	ci left: 1.843208e-01	ci right 1.998590e-01	k: 1920	n:10000
COL8A2   10000 perm   2 sec   (6376 perm/sec)   p_kst 1.920000e-01   p_cons 6.998000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000041/COL8A2.2_2120_10000_0.192_0.6998_1.png
                gene_name: COL8A2
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
COL9A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.940376e-02	ci left: 6.304019e-01	ci right 6.493165e-01	k: 6399	n:10000
Cons ci ratio: 2.812068e-02	ci left: 6.508212e-01	ci right 6.694854e-01	k: 6602	n:10000
KS ci ratio: 1.522044e-01	ci left: 5.744795e-02	ci right 6.700903e-02	k: 621	n:10000
COL9A2   10000 perm   2 sec   (6320 perm/sec)   p_kst 6.210000e-02   p_cons 6.602000e-01   p_joint 6.399000e-01

Joint ci ratio: 2.471575e-02	ci left: 5.501329e-01	ci right 5.639506e-01	k: 11141	n:20000
Cons ci ratio: 1.954050e-02	ci left: 6.614243e-01	ci right 6.745268e-01	k: 13360	n:20000
KS ci ratio: 1.091796e-01	ci left: 5.723493e-02	ci right 6.389354e-02	k: 1210	n:20000
COL9A2   20000 perm   4 sec   (5597 perm/sec)   p_kst 6.050000e-02   p_cons 6.680000e-01   p_joint 5.570500e-01

Joint ci ratio: 1.193906e-02	ci left: 7.775863e-01	ci right 7.869590e-01	k: 23469	n:30000
Cons ci ratio: 1.645276e-02	ci left: 6.488199e-01	ci right 6.596169e-01	k: 19627	n:30000
KS ci ratio: 8.957925e-02	ci left: 5.730604e-02	ci right 6.271289e-02	k: 1799	n:30000
COL9A2   30000 perm   6 sec   (5308 perm/sec)   p_kst 5.996667e-02   p_cons 6.542333e-01   p_joint 7.823000e-01

Outputting figure to mutsig2_images.part000000000041/COL9A2.2_2198_30000_0.059967_0.65423_0.7823.png
                gene_name: COL9A2
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.060 
        ci_ks_bounds_left: 0.057 
       ci_ks_bounds_right: 0.063 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.79 

Current progress: 85 percent done.
COL9A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.934637e-02	ci left: 6.313068e-01	ci right 6.502111e-01	k: 6408	n:10000
Cons ci ratio: 4.116368e-02	ci left: 4.656703e-01	ci right 4.853440e-01	k: 4755	n:10000
KS ci ratio: 6.241010e-02	ci left: 2.739874e-01	ci right 2.917393e-01	k: 2828	n:10000
COL9A3   10000 perm   2 sec   (6629 perm/sec)   p_kst 2.828000e-01   p_cons 4.755000e-01   p_joint 6.408000e-01

Outputting figure to mutsig2_images.part000000000041/COL9A3.2_2183_10000_0.2828_0.4755_0.6408.png
                gene_name: COL9A3
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 87 percent done.
COMMD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.881274e-02	ci left: 2.364969e-01	ci right 2.534520e-01	k: 2449	n:10000
Cons ci ratio: 1.092244e-01	ci left: 1.078341e-01	ci right 1.203917e-01	k: 1140	n:10000
KS ci ratio: 2.721092e-02	ci left: 6.655187e-01	ci right 6.839794e-01	k: 6748	n:10000
COMMD2   10000 perm   1 sec   (7529 perm/sec)   p_kst 6.748000e-01   p_cons 1.140000e-01   p_joint 2.449000e-01

Joint ci ratio: 3.204116e-02	ci left: 4.211286e-01	ci right 4.348924e-01	k: 8560	n:20000
Cons ci ratio: 6.861331e-02	ci left: 1.354650e-01	ci right 1.451398e-01	k: 2805	n:20000
KS ci ratio: 1.954050e-02	ci left: 6.614243e-01	ci right 6.745268e-01	k: 13360	n:20000
COMMD2   20000 perm   3 sec   (6616 perm/sec)   p_kst 6.680000e-01   p_cons 1.402500e-01   p_joint 4.280000e-01

Outputting figure to mutsig2_images.part000000000041/COMMD2.2_620_20000_0.668_0.14025_0.428.png
                gene_name: COMMD2
               theta_stop: 0.069 
                    nperm: 20000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.43 

Current progress: 89 percent done.
COMMD8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.975563e-02	ci left: 2.315572e-01	ci right 2.483945e-01	k: 2399	n:10000
Cons ci ratio: 7.154130e-02	ci left: 2.225711e-01	ci right 2.391859e-01	k: 2308	n:10000
KS ci ratio: 4.863654e-02	ci left: 3.841063e-01	ci right 4.033556e-01	k: 3937	n:10000
COMMD8   10000 perm   1 sec   (7227 perm/sec)   p_kst 3.937000e-01   p_cons 2.308000e-01   p_joint 2.399000e-01

Outputting figure to mutsig2_images.part000000000041/COMMD8.2_572_10000_0.3937_0.2308_0.2399.png
                gene_name: COMMD8
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 91 percent done.
COPS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.256426e-02	ci left: 2.729972e-01	ci right 2.907301e-01	k: 2818	n:10000
KS ci ratio: 3.494051e-02	ci left: 5.473990e-01	ci right 5.669676e-01	k: 5572	n:10000
COPS2   10000 perm   2 sec   (6647 perm/sec)   p_kst 5.572000e-01   p_cons 2.818000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000041/COPS2.2_1405_10000_0.5572_0.2818_1.png
                gene_name: COPS2
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
COPS4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.719572e-02	ci left: 3.103647e-01	ci right 3.287406e-01	k: 3195	n:10000
KS ci ratio: 2.503333e-02	ci left: 7.012988e-01	ci right 7.191786e-01	k: 7103	n:10000
COPS4   10000 perm   1 sec   (6808 perm/sec)   p_kst 7.103000e-01   p_cons 3.195000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000041/COPS4.2_1261_10000_0.7103_0.3195_1.png
                gene_name: COPS4
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
COPS5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.135109e-02	ci left: 9.172915e-01	ci right 9.278607e-01	k: 9227	n:10000
Cons ci ratio: 7.025640e-02	ci left: 2.289892e-01	ci right 2.457640e-01	k: 2373	n:10000
KS ci ratio: 5.992136e-02	ci left: 2.906312e-01	ci right 3.086857e-01	k: 2996	n:10000
COPS5   10000 perm   1 sec   (6986 perm/sec)   p_kst 2.996000e-01   p_cons 2.373000e-01   p_joint 9.227000e-01

Outputting figure to mutsig2_images.part000000000041/COPS5.2_1037_10000_0.2996_0.2373_0.9227.png
                gene_name: COPS5
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 96 percent done.
COPS7B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.779874e-02	ci left: 8.215767e-01	ci right 8.364311e-01	k: 8291	n:10000
Cons ci ratio: 3.722914e-02	ci left: 5.158568e-01	ci right 5.355282e-01	k: 5257	n:10000
KS ci ratio: 2.886371e-02	ci left: 6.389496e-01	ci right 6.577639e-01	k: 6484	n:10000
COPS7B   10000 perm   1 sec   (7153 perm/sec)   p_kst 6.484000e-01   p_cons 5.257000e-01   p_joint 8.291000e-01

Outputting figure to mutsig2_images.part000000000041/COPS7B.2_819_10000_0.6484_0.5257_0.8291.png
                gene_name: COPS7B
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 98 percent done.
COQ4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.509683e-02	ci left: 4.205673e-01	ci right 4.400733e-01	k: 4303	n:10000
Cons ci ratio: 5.707758e-02	ci left: 3.112576e-01	ci right 3.296471e-01	k: 3204	n:10000
KS ci ratio: 7.152117e-02	ci left: 2.226698e-01	ci right 2.392872e-01	k: 2309	n:10000
COQ4   10000 perm   1 sec   (7103 perm/sec)   p_kst 2.309000e-01   p_cons 3.204000e-01   p_joint 4.303000e-01

Outputting figure to mutsig2_images.part000000000041/COQ4.2_826_10000_0.2309_0.3204_0.4303.png
                gene_name: COQ4
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000041
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 41 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1427>
Subject: Job 8003975: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1427>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000042> was used as the working directory.
Started at Sun Nov 11 15:04:52 2012
Results reported at Sun Nov 11 15:16:39 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000042.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000042.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 42  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000042.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    838.86 sec.
    Max Memory :      4743 MB
    Max Swap   :      7059 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
42
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 42
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 42: processing genes 3710 - 3800
Calculating significance of each gene.
Using projection method.
3710	CORIN	8.846911e-01
3711	CORO1A	1
3712	CORO1B	8.163013e-01
3713	CORO1C	1.431586e-01
3714	CORO2A	8.182046e-01
3715	CORO2B	6.186045e-01
3716	CORO6	3.520796e-01
3717	CORO7	1.111794e-01
3718	CORT	1
3719	COTL1	1
3720	COX10	1
3721	COX11	7.054479e-01
3722	COX15	1
3723	COX16	2.557362e-01
3724	COX17	1
3725	COX18	1
3726	COX19	1.996685e-02
3727	COX4I1	2.822489e-01
3728	COX4I2	2.245346e-01
3729	COX4NB	1
3730	COX5A	1
3731	COX5B	1
3732	COX6A1	1
3733	COX6A2	1
3734	COX6B1	2.213606e-01
3735	COX6B2	1
3736	COX6C	9.541348e-02
3737	COX7A1	1
3738	COX7A2	1
3739	COX7A2L	8.786227e-02
3740	COX7B	1
3741	COX7B2	1.804285e-03
3742	COX7C	1
3743	COX8A	1
3744	COX8C	1
3745	CP	1
3746	CP110	7.632597e-01
3747	CPA1	6.326214e-01
3748	CPA2	7.483326e-01
3749	CPA3	5.878334e-03
3750	CPA4	3.371082e-01
3751	CPA5	7.632860e-01
3752	CPA6	2.829831e-01
3753	CPAMD8	6.257907e-01
3754	CPB1	6.863018e-03
3755	CPB2	2.721462e-01
3756	CPD	7.369228e-01
3757	CPE	7.146230e-01
3758	CPEB1	8.500965e-01
3759	CPEB2	6.506878e-01
3760	CPEB3	5.270653e-01
3761	CPEB4	5.987743e-01
3762	CPLX1	1
3763	CPLX2	1
3764	CPLX3	5.344791e-01
3765	CPLX4	3.856829e-01
3766	CPM	6.605180e-01
3767	CPN1	1.779979e-01
3768	CPN2	1
3769	CPNE1	1
3770	CPNE2	1
3771	CPNE3	8.460390e-01
3772	CPNE4	6.885927e-01
3773	CPNE5	7.623687e-01
3774	CPNE6	8.737985e-01
3775	CPNE7	5.577274e-01
3776	CPNE8	1
3777	CPNE9	1
3778	CPO	7.668358e-01
3779	CPOX	3.127898e-01
3780	CPPED1	1.664590e-01
3781	CPS1	3.500788e-06
3782	CPSF1	6.721942e-01
3783	CPSF2	6.447960e-01
3784	CPSF3	1
3785	CPSF3L	9.087946e-01
3786	CPSF4	2.570096e-01
3787	CPSF6	7.061664e-01
3788	CPSF7	6.015159e-01
3789	CPT1A	6.323036e-01
3790	CPT1B	6.098435e-01
3791	CPT1C	7.626984e-01
3792	CPT2	6.393641e-01
3793	CPVL	1.632324e-01
3794	CPXCR1	7.084507e-04
3795	CPXM1	2.233597e-01
3796	CPXM2	8.527654e-01
3797	CPZ	1.550284e-02
3798	CR1	9.970575e-01
3799	CR1L	7.643545e-01
3800	CR2	9.637400e-01
Done

Running MutSig 2:
Scatter job 42: processing genes 3710 - 3800
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CPS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.155970e-02	ci left: 2.795337e-01	ci right 2.973897e-01	k: 2884	n:10000
Cons ci ratio: 1.248199e-02	ci left: 9.021657e-01	ci right 9.135954e-01	k: 9080	n:10000
KS ci ratio: 1.021285e-01	ci left: 1.218044e-01	ci right 1.350129e-01	k: 1283	n:10000
CPS1   10000 perm   3 sec   (3203 perm/sec)   p_kst 1.283000e-01   p_cons 9.080000e-01   p_joint 2.884000e-01

Joint ci ratio: 5.341538e-02	ci left: 2.064516e-01	ci right 2.178322e-01	k: 4242	n:20000
Cons ci ratio: 9.240888e-03	ci left: 8.957590e-01	ci right 9.041244e-01	k: 18000	n:20000
KS ci ratio: 7.311807e-02	ci left: 1.210368e-01	ci right 1.302723e-01	k: 2512	n:20000
CPS1   20000 perm   10 sec   (1917 perm/sec)   p_kst 1.256000e-01   p_cons 9.000000e-01   p_joint 2.121000e-01

Outputting figure to mutsig2_images.part000000000042/CPS1.27_4677_20000_0.1256_0.9_0.2121.png
                gene_name: CPS1
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 2 percent done.
CORIN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.726153e-02	ci left: 3.098686e-01	ci right 3.282369e-01	k: 3190	n:10000
KS ci ratio: 2.830889e-02	ci left: 6.478024e-01	ci right 6.665060e-01	k: 6572	n:10000
CORIN   10000 perm   2 sec   (4166 perm/sec)   p_kst 6.572000e-01   p_cons 3.190000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000042/CORIN.11_3217_10000_0.6572_0.319_1.png
                gene_name: CORIN
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 5 percent done.
CR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.456935e-01	ci left: 6.256264e-02	ci right 7.249110e-02	k: 674	n:10000
Cons ci ratio: 3.600075e-02	ci left: 5.325743e-01	ci right 5.522010e-01	k: 5424	n:10000
KS ci ratio: 1.922817e-01	ci left: 3.605305e-02	ci right 4.381788e-02	k: 398	n:10000
CR2   10000 perm   2 sec   (4449 perm/sec)   p_kst 3.980000e-02   p_cons 5.424000e-01   p_joint 6.740000e-02

Joint ci ratio: 8.752461e-02	ci left: 8.714669e-02	ci right 9.517263e-02	k: 1822	n:20000
Cons ci ratio: 2.547089e-02	ci left: 5.352144e-01	ci right 5.490733e-01	k: 10843	n:20000
KS ci ratio: 1.335450e-01	ci left: 3.853576e-02	ci right 4.409860e-02	k: 825	n:20000
CR2   20000 perm   5 sec   (4000 perm/sec)   p_kst 4.125000e-02   p_cons 5.421500e-01   p_joint 9.110000e-02

Joint ci ratio: 6.919716e-02	ci left: 9.327966e-02	ci right 9.999868e-02	k: 2898	n:30000
Cons ci ratio: 2.039220e-02	ci left: 5.462512e-01	ci right 5.575388e-01	k: 16557	n:30000
KS ci ratio: 1.101574e-01	ci left: 3.826480e-02	ci right 4.275808e-02	k: 1214	n:30000
CR2   30000 perm   8 sec   (3819 perm/sec)   p_kst 4.046667e-02   p_cons 5.519000e-01   p_joint 9.660000e-02

Joint ci ratio: 6.859766e-02	ci left: 7.288010e-02	ci right 7.808173e-02	k: 3018	n:40000
Cons ci ratio: 1.761488e-02	ci left: 5.482867e-01	ci right 5.580556e-01	k: 22127	n:40000
KS ci ratio: 9.476118e-02	ci left: 3.907768e-02	ci right 4.298931e-02	k: 1640	n:40000
CR2   40000 perm   11 sec   (3706 perm/sec)   p_kst 4.100000e-02   p_cons 5.531750e-01   p_joint 7.545000e-02

Outputting figure to mutsig2_images.part000000000042/CR2.11_3355_40000_0.041_0.55317_0.07545.png
                gene_name: CR2
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.041 
        ci_ks_bounds_left: 0.039 
       ci_ks_bounds_right: 0.043 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.075 
     ci_joint_bounds_left: 0.073 
    ci_joint_bounds_right: 0.078 

Current progress: 7 percent done.
CPZ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.640311e-02	ci left: 3.164175e-01	ci right 3.348842e-01	k: 3256	n:10000
Cons ci ratio: 1.030513e-01	ci left: 1.198488e-01	ci right 1.329697e-01	k: 1263	n:10000
KS ci ratio: 3.301959e-02	ci left: 5.751689e-01	ci right 5.945816e-01	k: 5849	n:10000
CPZ   10000 perm   2 sec   (5737 perm/sec)   p_kst 5.849000e-01   p_cons 1.263000e-01   p_joint 3.256000e-01

Joint ci ratio: 4.371043e-02	ci left: 2.804887e-01	ci right 2.930733e-01	k: 5735	n:20000
Cons ci ratio: 7.075435e-02	ci left: 1.283224e-01	ci right 1.377845e-01	k: 2660	n:20000
KS ci ratio: 2.342191e-02	ci left: 5.765308e-01	ci right 5.902449e-01	k: 11668	n:20000
CPZ   20000 perm   4 sec   (5036 perm/sec)   p_kst 5.834000e-01   p_cons 1.330000e-01   p_joint 2.867500e-01

Outputting figure to mutsig2_images.part000000000042/CPZ.10_2003_20000_0.5834_0.133_0.28675.png
                gene_name: CPZ
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 9 percent done.
CPAMD8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.680584e-02	ci left: 5.215616e-01	ci right 5.412201e-01	k: 5314	n:10000
Cons ci ratio: 5.182757e-02	ci left: 3.543616e-01	ci right 3.733178e-01	k: 3638	n:10000
KS ci ratio: 4.310302e-02	ci left: 4.428093e-01	ci right 4.624183e-01	k: 4526	n:10000
CPAMD8   10000 perm   2 sec   (4022 perm/sec)   p_kst 4.526000e-01   p_cons 3.638000e-01   p_joint 5.314000e-01

Outputting figure to mutsig2_images.part000000000042/CPAMD8.7_5967_10000_0.4526_0.3638_0.5314.png
                gene_name: CPAMD8
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 11 percent done.
CR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.276270e-01	ci left: 2.551545e-02	ci right 3.216281e-02	k: 287	n:10000
Cons ci ratio: 1.567378e-02	ci left: 8.552887e-01	ci right 8.688996e-01	k: 8622	n:10000
KS ci ratio: 5.319759e-01	ci left: 3.972510e-03	ci right 6.926868e-03	k: 53	n:10000
CR1   10000 perm   3 sec   (3289 perm/sec)   p_kst 5.300000e-03   p_cons 8.622000e-01   p_joint 2.870000e-02

Joint ci ratio: 1.381450e-01	ci left: 3.602079e-02	ci right 4.141438e-02	k: 773	n:20000
Cons ci ratio: 1.082910e-02	ci left: 8.628244e-01	ci right 8.722685e-01	k: 17352	n:20000
KS ci ratio: 3.910091e-01	ci left: 4.024882e-03	ci right 6.023201e-03	k: 99	n:20000
CR1   20000 perm   7 sec   (3022 perm/sec)   p_kst 4.950000e-03   p_cons 8.676000e-01   p_joint 3.865000e-02

Joint ci ratio: 1.398132e-01	ci left: 2.374559e-02	ci right 2.734709e-02	k: 765	n:30000
Cons ci ratio: 8.798011e-03	ci left: 8.648597e-01	ci right 8.725354e-01	k: 26062	n:30000
KS ci ratio: 3.150656e-01	ci left: 4.325514e-03	ci right 5.972562e-03	k: 153	n:30000
CR1   30000 perm   10 sec   (2924 perm/sec)   p_kst 5.100000e-03   p_cons 8.687333e-01   p_joint 2.550000e-02

Joint ci ratio: 1.423696e-01	ci left: 1.727438e-02	ci right 1.994616e-02	k: 743	n:40000
Cons ci ratio: 7.685302e-03	ci left: 8.633805e-01	ci right 8.700662e-01	k: 34670	n:40000
KS ci ratio: 2.724118e-01	ci left: 4.448864e-03	ci right 5.874430e-03	k: 205	n:40000
CR1   40000 perm   14 sec   (2861 perm/sec)   p_kst 5.125000e-03   p_cons 8.667500e-01   p_joint 1.857500e-02

Joint ci ratio: 1.012241e-01	ci left: 2.764407e-02	ci right 3.061094e-02	k: 1455	n:50000
Cons ci ratio: 6.838435e-03	ci left: 8.649411e-01	ci right 8.708961e-01	k: 43397	n:50000
KS ci ratio: 2.429429e-01	ci left: 4.550863e-03	ci right 5.827623e-03	k: 258	n:50000
CR1   50000 perm   18 sec   (2796 perm/sec)   p_kst 5.160000e-03   p_cons 8.679400e-01   p_joint 2.910000e-02

Joint ci ratio: 9.609911e-02	ci left: 2.568512e-02	ci right 2.829424e-02	k: 1618	n:60000
Cons ci ratio: 6.221863e-03	ci left: 8.659715e-01	ci right 8.713928e-01	k: 52122	n:60000
KS ci ratio: 2.209910e-01	ci left: 4.640211e-03	ci right 5.808434e-03	k: 312	n:60000
CR1   60000 perm   22 sec   (2747 perm/sec)   p_kst 5.200000e-03   p_cons 8.687000e-01   p_joint 2.696667e-02

Joint ci ratio: 9.628938e-02	ci left: 2.201377e-02	ci right 2.425457e-02	k: 1618	n:70000
Cons ci ratio: 5.763548e-03	ci left: 8.660461e-01	ci right 8.710662e-01	k: 60800	n:70000
KS ci ratio: 2.038048e-01	ci left: 4.721322e-03	ci right 5.806024e-03	k: 367	n:70000
CR1   70000 perm   26 sec   (2706 perm/sec)   p_kst 5.242857e-03   p_cons 8.685714e-01   p_joint 2.311429e-02

Joint ci ratio: 8.840436e-02	ci left: 2.292602e-02	ci right 2.505869e-02	k: 1918	n:80000
Cons ci ratio: 5.392680e-03	ci left: 8.661512e-01	ci right 8.708471e-01	k: 69481	n:80000
KS ci ratio: 1.898657e-01	ci left: 4.796712e-03	ci right 5.814670e-03	k: 423	n:80000
CR1   80000 perm   30 sec   (2675 perm/sec)   p_kst 5.287500e-03   p_cons 8.685125e-01   p_joint 2.397500e-02

Joint ci ratio: 8.902404e-02	ci left: 2.014923e-02	ci right 2.203737e-02	k: 1897	n:90000
Cons ci ratio: 4.895853e-03	ci left: 8.747358e-01	ci right 8.790399e-01	k: 78921	n:90000
KS ci ratio: 1.775168e-01	ci left: 4.910409e-03	ci right 5.877447e-03	k: 484	n:90000
CR1   90000 perm   34 sec   (2631 perm/sec)   p_kst 5.377778e-03   p_cons 8.769000e-01   p_joint 2.107778e-02

Joint ci ratio: 9.148191e-02	ci left: 1.720453e-02	ci right 1.886360e-02	k: 1802	n:100000
Cons ci ratio: 4.643529e-03	ci left: 8.748981e-01	ci right 8.789800e-01	k: 87695	n:100000
KS ci ratio: 1.703065e-01	ci left: 4.821071e-03	ci right 5.727988e-03	k: 526	n:100000
CR1   100000 perm   39 sec   (2597 perm/sec)   p_kst 5.260000e-03   p_cons 8.769500e-01   p_joint 1.802000e-02

Joint ci ratio: 9.646163e-02	ci left: 1.407694e-02	ci right 1.551245e-02	k: 1626	n:110000
Cons ci ratio: 4.586113e-03	ci left: 8.671382e-01	ci right 8.711332e-01	k: 95606	n:110000
KS ci ratio: 1.613627e-01	ci left: 4.905638e-03	ci right 5.775302e-03	k: 586	n:110000
CR1   110000 perm   43 sec   (2566 perm/sec)   p_kst 5.327273e-03   p_cons 8.691455e-01   p_joint 1.478182e-02

Joint ci ratio: 9.924741e-02	ci left: 1.219600e-02	ci right 1.347770e-02	k: 1539	n:120000
Cons ci ratio: 4.239910e-03	ci left: 8.750278e-01	ci right 8.787540e-01	k: 105228	n:120000
KS ci ratio: 1.544160e-01	ci left: 4.929065e-03	ci right 5.761782e-03	k: 640	n:120000
CR1   120000 perm   47 sec   (2538 perm/sec)   p_kst 5.333333e-03   p_cons 8.769000e-01   p_joint 1.282500e-02

Joint ci ratio: 8.695459e-02	ci left: 1.472255e-02	ci right 1.606842e-02	k: 2000	n:130000
Cons ci ratio: 4.078937e-03	ci left: 8.748154e-01	ci right 8.783986e-01	k: 113960	n:130000
KS ci ratio: 1.503761e-01	ci left: 4.808848e-03	ci right 5.598086e-03	k: 675	n:130000
CR1   130000 perm   52 sec   (2509 perm/sec)   p_kst 5.192308e-03   p_cons 8.766154e-01   p_joint 1.538462e-02

Joint ci ratio: 9.090788e-02	ci left: 1.251093e-02	ci right 1.370936e-02	k: 1834	n:140000
Cons ci ratio: 3.934729e-03	ci left: 8.746502e-01	ci right 8.781056e-01	k: 122694	n:140000
KS ci ratio: 1.455101e-01	ci left: 4.781764e-03	ci right 5.538954e-03	k: 721	n:140000
CR1   140000 perm   56 sec   (2479 perm/sec)   p_kst 5.150000e-03   p_cons 8.763857e-01   p_joint 1.310000e-02

Joint ci ratio: 8.844442e-02	ci left: 1.235460e-02	ci right 1.350434e-02	k: 1938	n:150000
Cons ci ratio: 3.809939e-03	ci left: 8.742142e-01	ci right 8.775579e-01	k: 131384	n:150000
KS ci ratio: 1.400829e-01	ci left: 4.829414e-03	ci right 5.563246e-03	k: 778	n:150000
CR1   150000 perm   61 sec   (2453 perm/sec)   p_kst 5.186667e-03   p_cons 8.758933e-01   p_joint 1.292000e-02

Joint ci ratio: 8.781824e-02	ci left: 1.175954e-02	ci right 1.284574e-02	k: 1967	n:160000
Cons ci ratio: 3.692552e-03	ci left: 8.740546e-01	ci right 8.772943e-01	k: 140109	n:160000
KS ci ratio: 1.353838e-01	ci left: 4.859487e-03	ci right 5.571123e-03	k: 833	n:160000
CR1   160000 perm   66 sec   (2426 perm/sec)   p_kst 5.206250e-03   p_cons 8.756812e-01   p_joint 1.229375e-02

Joint ci ratio: 8.552813e-02	ci left: 1.168355e-02	ci right 1.273318e-02	k: 2074	n:170000
Cons ci ratio: 3.581604e-03	ci left: 8.741460e-01	ci right 8.772883e-01	k: 148873	n:170000
KS ci ratio: 1.313510e-01	ci left: 4.869314e-03	ci right 5.559490e-03	k: 885	n:170000
CR1   170000 perm   71 sec   (2399 perm/sec)   p_kst 5.205882e-03   p_cons 8.757235e-01   p_joint 1.220000e-02

Joint ci ratio: 8.514334e-02	ci left: 1.114307e-02	ci right 1.213942e-02	k: 2094	n:180000
Cons ci ratio: 3.482311e-03	ci left: 8.740888e-01	ci right 8.771435e-01	k: 157612	n:180000
KS ci ratio: 1.275899e-01	ci left: 4.883707e-03	ci right 5.554602e-03	k: 938	n:180000
CR1   180000 perm   76 sec   (2372 perm/sec)   p_kst 5.211111e-03   p_cons 8.756222e-01   p_joint 1.163333e-02

Joint ci ratio: 8.545893e-02	ci left: 1.048433e-02	ci right 1.142542e-02	k: 2080	n:190000
Cons ci ratio: 3.391578e-03	ci left: 8.739913e-01	ci right 8.769657e-01	k: 166342	n:190000
KS ci ratio: 1.235102e-01	ci left: 4.947846e-03	ci right 5.604229e-03	k: 1001	n:190000
CR1   190000 perm   81 sec   (2348 perm/sec)   p_kst 5.268421e-03   p_cons 8.754842e-01   p_joint 1.094737e-02

Joint ci ratio: 8.009412e-02	ci left: 1.136073e-02	ci right 1.231349e-02	k: 2366	n:200000
Cons ci ratio: 3.306900e-03	ci left: 8.739497e-01	ci right 8.768494e-01	k: 175081	n:200000
KS ci ratio: 1.209454e-01	ci left: 4.908874e-03	ci right 5.545596e-03	k: 1044	n:200000
CR1   200000 perm   86 sec   (2324 perm/sec)   p_kst 5.220000e-03   p_cons 8.754050e-01   p_joint 1.183000e-02

Joint ci ratio: 7.884649e-02	ci left: 1.117442e-02	ci right 1.209628e-02	k: 2442	n:210000
Cons ci ratio: 3.225868e-03	ci left: 8.740756e-01	ci right 8.769045e-01	k: 183854	n:210000
KS ci ratio: 1.179901e-01	ci left: 4.919959e-03	ci right 5.541437e-03	k: 1097	n:210000
CR1   210000 perm   91 sec   (2301 perm/sec)   p_kst 5.223810e-03   p_cons 8.754952e-01   p_joint 1.162857e-02

Joint ci ratio: 7.867243e-02	ci left: 1.071986e-02	ci right 1.160218e-02	k: 2454	n:220000
Cons ci ratio: 3.154914e-03	ci left: 8.738848e-01	ci right 8.766507e-01	k: 192560	n:220000
KS ci ratio: 1.155952e-01	ci left: 4.899304e-03	ci right 5.504754e-03	k: 1143	n:220000
CR1   220000 perm   97 sec   (2278 perm/sec)   p_kst 5.195455e-03   p_cons 8.752727e-01   p_joint 1.115455e-02

Joint ci ratio: 7.341652e-02	ci left: 1.179376e-02	ci right 1.269685e-02	k: 2815	n:230000
Cons ci ratio: 3.088375e-03	ci left: 8.737158e-01	ci right 8.764226e-01	k: 201267	n:230000
KS ci ratio: 1.124417e-01	ci left: 4.960849e-03	ci right 5.556072e-03	k: 1208	n:230000
CR1   230000 perm   102 sec   (2256 perm/sec)   p_kst 5.252174e-03   p_cons 8.750739e-01   p_joint 1.223913e-02

Joint ci ratio: 7.288744e-02	ci left: 1.147408e-02	ci right 1.234610e-02	k: 2857	n:240000
Cons ci ratio: 3.023506e-03	ci left: 8.737330e-01	ci right 8.763829e-01	k: 210015	n:240000
KS ci ratio: 1.100552e-01	ci left: 4.968837e-03	ci right 5.551543e-03	k: 1261	n:240000
CR1   240000 perm   107 sec   (2235 perm/sec)   p_kst 5.254167e-03   p_cons 8.750625e-01   p_joint 1.190417e-02

Joint ci ratio: 7.296961e-02	ci left: 1.099539e-02	ci right 1.183200e-02	k: 2852	n:250000
Cons ci ratio: 2.964781e-03	ci left: 8.735848e-01	ci right 8.761825e-01	k: 218722	n:250000
KS ci ratio: 1.078145e-01	ci left: 4.976308e-03	ci right 5.547254e-03	k: 1314	n:250000
CR1   250000 perm   113 sec   (2211 perm/sec)   p_kst 5.256000e-03   p_cons 8.748880e-01   p_joint 1.140800e-02

Joint ci ratio: 7.187328e-02	ci left: 1.090480e-02	ci right 1.172153e-02	k: 2940	n:260000
Cons ci ratio: 2.906996e-03	ci left: 8.736261e-01	ci right 8.761732e-01	k: 227475	n:260000
KS ci ratio: 1.055503e-01	ci left: 4.998296e-03	ci right 5.558973e-03	k: 1371	n:260000
CR1   260000 perm   119 sec   (2190 perm/sec)   p_kst 5.273077e-03   p_cons 8.749038e-01   p_joint 1.130769e-02

Joint ci ratio: 6.729552e-02	ci left: 1.199326e-02	ci right 1.283207e-02	k: 3350	n:270000
Cons ci ratio: 2.850773e-03	ci left: 8.737950e-01	ci right 8.762932e-01	k: 236263	n:270000
KS ci ratio: 1.040099e-01	ci left: 4.961041e-03	ci right 5.508921e-03	k: 1412	n:270000
CR1   270000 perm   124 sec   (2170 perm/sec)   p_kst 5.229630e-03   p_cons 8.750481e-01   p_joint 1.240741e-02

Joint ci ratio: 6.718897e-02	ci left: 1.160699e-02	ci right 1.241745e-02	k: 3362	n:280000
Cons ci ratio: 2.798556e-03	ci left: 8.738841e-01	ci right 8.763367e-01	k: 245032	n:280000
KS ci ratio: 1.021474e-01	ci left: 4.964788e-03	ci right 5.502674e-03	k: 1464	n:280000
CR1   280000 perm   130 sec   (2150 perm/sec)   p_kst 5.228571e-03   p_cons 8.751143e-01   p_joint 1.200714e-02

Joint ci ratio: 6.706197e-02	ci left: 1.125414e-02	ci right 1.203842e-02	k: 3376	n:290000
Cons ci ratio: 2.749107e-03	ci left: 8.739674e-01	ci right 8.763768e-01	k: 253801	n:290000
KS ci ratio: 1.005148e-01	ci left: 4.954909e-03	ci right 5.482639e-03	k: 1512	n:290000
CR1   290000 perm   136 sec   (2131 perm/sec)   p_kst 5.213793e-03   p_cons 8.751759e-01   p_joint 1.164138e-02

Joint ci ratio: 6.268731e-02	ci left: 1.246315e-02	ci right 1.327297e-02	k: 3859	n:300000
Cons ci ratio: 2.703260e-03	ci left: 8.739585e-01	ci right 8.763276e-01	k: 262544	n:300000
KS ci ratio: 9.879910e-02	ci left: 4.962010e-03	ci right 5.480952e-03	k: 1565	n:300000
CR1   300000 perm   142 sec   (2110 perm/sec)   p_kst 5.216667e-03   p_cons 8.751467e-01   p_joint 1.286333e-02

Outputting figure to mutsig2_images.part000000000042/CR1.7_7658_300000_0.0052167_0.87515_0.012863.png
                gene_name: CR1
               theta_stop: 0.099 
                    nperm: 300000 
                     p_ks: 0.0052 
        ci_ks_bounds_left: 0.0050 
       ci_ks_bounds_right: 0.0055 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.013 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.013 

Current progress: 14 percent done.
CORO7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.011454e-02	ci left: 3.699753e-01	ci right 3.890950e-01	k: 3795	n:10000
Cons ci ratio: 1.454701e-02	ci left: 8.724474e-01	ci right 8.853309e-01	k: 8790	n:10000
KS ci ratio: 6.862726e-02	ci left: 2.374850e-01	ci right 2.544633e-01	k: 2459	n:10000
CORO7   10000 perm   2 sec   (4637 perm/sec)   p_kst 2.459000e-01   p_cons 8.790000e-01   p_joint 3.795000e-01

Outputting figure to mutsig2_images.part000000000042/CORO7.6_2890_10000_0.2459_0.879_0.3795.png
                gene_name: CORO7
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 16 percent done.
CPA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.817418e-02	ci left: 8.154773e-01	ci right 8.305340e-01	k: 8231	n:10000
Cons ci ratio: 5.046744e-02	ci left: 3.666925e-01	ci right 3.857796e-01	k: 3762	n:10000
KS ci ratio: 1.842942e-02	ci left: 8.113112e-01	ci right 8.265025e-01	k: 8190	n:10000
CPA3   10000 perm   2 sec   (5881 perm/sec)   p_kst 8.190000e-01   p_cons 3.762000e-01   p_joint 8.231000e-01

Outputting figure to mutsig2_images.part000000000042/CPA3.6_1298_10000_0.819_0.3762_0.8231.png
                gene_name: CPA3
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 18 percent done.
CPB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.164895e-02	ci left: 3.559523e-01	ci right 3.749262e-01	k: 3654	n:10000
Cons ci ratio: 1.749028e-02	ci left: 8.265603e-01	ci right 8.412446e-01	k: 8340	n:10000
KS ci ratio: 6.728524e-02	ci left: 2.447989e-01	ci right 2.619450e-01	k: 2533	n:10000
CPB1   10000 perm   2 sec   (5542 perm/sec)   p_kst 2.533000e-01   p_cons 8.340000e-01   p_joint 3.654000e-01

Outputting figure to mutsig2_images.part000000000042/CPB1.6_1298_10000_0.2533_0.834_0.3654.png
                gene_name: CPB1
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 20 percent done.
CPXCR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.036624e-01	ci left: 1.185779e-01	ci right 1.316413e-01	k: 1250	n:10000
Cons ci ratio: 9.128017e-02	ci left: 1.485467e-01	ci right 1.628545e-01	k: 1556	n:10000
KS ci ratio: 8.481661e-02	ci left: 1.684829e-01	ci right 1.835063e-01	k: 1759	n:10000
CPXCR1   10000 perm   2 sec   (5840 perm/sec)   p_kst 1.759000e-01   p_cons 1.556000e-01   p_joint 1.250000e-01

Joint ci ratio: 8.416306e-02	ci left: 9.371693e-02	ci right 1.020004e-01	k: 1956	n:20000
Cons ci ratio: 6.470589e-02	ci left: 1.500098e-01	ci right 1.600907e-01	k: 3100	n:20000
KS ci ratio: 6.015161e-02	ci left: 1.698553e-01	ci right 1.804393e-01	k: 3502	n:20000
CPXCR1   20000 perm   4 sec   (5091 perm/sec)   p_kst 1.751000e-01   p_cons 1.550000e-01   p_joint 9.780000e-02

Outputting figure to mutsig2_images.part000000000042/CPXCR1.6_910_20000_0.1751_0.155_0.0978.png
                gene_name: CPXCR1
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.098 
     ci_joint_bounds_left: 0.094 
    ci_joint_bounds_right: 0.10 

Current progress: 23 percent done.
CPXM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.793668e-02	ci left: 8.193399e-01	ci right 8.342692e-01	k: 8269	n:10000
Cons ci ratio: 5.224432e-02	ci left: 3.506835e-01	ci right 3.695981e-01	k: 3601	n:10000
KS ci ratio: 2.671020e-02	ci left: 6.736771e-01	ci right 6.920163e-01	k: 6829	n:10000
CPXM1   10000 perm   2 sec   (5011 perm/sec)   p_kst 6.829000e-01   p_cons 3.601000e-01   p_joint 8.269000e-01

Outputting figure to mutsig2_images.part000000000042/CPXM1.6_2261_10000_0.6829_0.3601_0.8269.png
                gene_name: CPXM1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 25 percent done.
CPN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.264985e-02	ci left: 7.410878e-01	ci right 7.581666e-01	k: 7497	n:10000
Cons ci ratio: 3.789127e-02	ci left: 5.070521e-01	ci right 5.267381e-01	k: 5169	n:10000
KS ci ratio: 1.609321e-02	ci left: 8.487612e-01	ci right 8.626309e-01	k: 8558	n:10000
CPN1   10000 perm   2 sec   (5763 perm/sec)   p_kst 8.558000e-01   p_cons 5.169000e-01   p_joint 7.497000e-01

Outputting figure to mutsig2_images.part000000000042/CPN1.5_1413_10000_0.8558_0.5169_0.7497.png
                gene_name: CPN1
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 27 percent done.
CPT1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.733862e-02	ci left: 2.445023e-01	ci right 2.616417e-01	k: 2530	n:10000
Cons ci ratio: 1.956399e-02	ci left: 7.926319e-01	ci right 8.083926e-01	k: 8006	n:10000
KS ci ratio: 9.287501e-02	ci left: 1.441328e-01	ci right 1.582710e-01	k: 1511	n:10000
CPT1A   10000 perm   2 sec   (5292 perm/sec)   p_kst 1.511000e-01   p_cons 8.006000e-01   p_joint 2.530000e-01

Outputting figure to mutsig2_images.part000000000042/CPT1A.5_2434_10000_0.1511_0.8006_0.253.png
                gene_name: CPT1A
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 30 percent done.
CORO1C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.526261e-02	ci left: 8.616169e-01	ci right 8.749678e-01	k: 8684	n:10000
Cons ci ratio: 4.936750e-02	ci left: 3.770397e-01	ci right 3.962264e-01	k: 3866	n:10000
KS ci ratio: 2.140611e-02	ci left: 7.619276e-01	ci right 7.785147e-01	k: 7703	n:10000
CORO1C   10000 perm   2 sec   (6187 perm/sec)   p_kst 7.703000e-01   p_cons 3.866000e-01   p_joint 8.684000e-01

Outputting figure to mutsig2_images.part000000000042/CORO1C.4_1465_10000_0.7703_0.3866_0.8684.png
                gene_name: CORO1C
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 32 percent done.
CPD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.589183e-02	ci left: 2.527095e-01	ci right 2.700297e-01	k: 2613	n:10000
Cons ci ratio: 4.388548e-02	ci left: 4.339301e-01	ci right 4.535027e-01	k: 4437	n:10000
KS ci ratio: 1.044270e-01	ci left: 1.170141e-01	ci right 1.300061e-01	k: 1234	n:10000
CPD   10000 perm   2 sec   (4793 perm/sec)   p_kst 1.234000e-01   p_cons 4.437000e-01   p_joint 2.613000e-01

Joint ci ratio: 4.785646e-02	ci left: 2.451512e-01	ci right 2.572212e-01	k: 5023	n:20000
Cons ci ratio: 3.130615e-02	ci left: 4.325058e-01	ci right 4.463118e-01	k: 8788	n:20000
KS ci ratio: 7.396201e-02	ci left: 1.185766e-01	ci right 1.277333e-01	k: 2462	n:20000
CPD   20000 perm   5 sec   (4317 perm/sec)   p_kst 1.231000e-01   p_cons 4.394000e-01   p_joint 2.511500e-01

Outputting figure to mutsig2_images.part000000000042/CPD.4_4227_20000_0.1231_0.4394_0.25115.png
                gene_name: CPD
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 34 percent done.
CPNE7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.459494e-02	ci left: 5.523091e-01	ci right 5.718547e-01	k: 5621	n:10000
Cons ci ratio: 3.821111e-02	ci left: 5.028508e-01	ci right 5.225418e-01	k: 5127	n:10000
KS ci ratio: 3.038716e-02	ci left: 6.150242e-01	ci right 6.341032e-01	k: 6246	n:10000
CPNE7   10000 perm   2 sec   (5560 perm/sec)   p_kst 6.246000e-01   p_cons 5.127000e-01   p_joint 5.621000e-01

Outputting figure to mutsig2_images.part000000000042/CPNE7.4_1970_10000_0.6246_0.5127_0.5621.png
                gene_name: CPNE7
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 36 percent done.
CPSF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.404318e-02	ci left: 5.602275e-01	ci right 5.797317e-01	k: 5700	n:10000
KS ci ratio: 2.646388e-02	ci left: 6.777071e-01	ci right 6.959839e-01	k: 6869	n:10000
CPSF1   10000 perm   2 sec   (4458 perm/sec)   p_kst 6.869000e-01   p_cons 5.700000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000042/CPSF1.4_4480_10000_0.6869_0.57_1.png
                gene_name: CPSF1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 39 percent done.
CPVL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.345683e-02	ci left: 2.673539e-01	ci right 2.849767e-01	k: 2761	n:10000
Cons ci ratio: 6.278129e-02	ci left: 2.716109e-01	ci right 2.893171e-01	k: 2804	n:10000
KS ci ratio: 7.852074e-02	ci left: 1.916074e-01	ci right 2.073681e-01	k: 1994	n:10000
CPVL   10000 perm   2 sec   (6004 perm/sec)   p_kst 1.994000e-01   p_cons 2.804000e-01   p_joint 2.761000e-01

Outputting figure to mutsig2_images.part000000000042/CPVL.4_1479_10000_0.1994_0.2804_0.2761.png
                gene_name: CPVL
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 41 percent done.
CORO2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.617279e-02	ci left: 3.182039e-01	ci right 3.366967e-01	k: 3274	n:10000
Cons ci ratio: 3.820347e-02	ci left: 5.029509e-01	ci right 5.226417e-01	k: 5128	n:10000
KS ci ratio: 8.661395e-02	ci left: 1.625864e-01	ci right 1.774064e-01	k: 1699	n:10000
CORO2B   10000 perm   2 sec   (6070 perm/sec)   p_kst 1.699000e-01   p_cons 5.128000e-01   p_joint 3.274000e-01

Outputting figure to mutsig2_images.part000000000042/CORO2B.3_1491_10000_0.1699_0.5128_0.3274.png
                gene_name: CORO2B
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 43 percent done.
COX7B2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.615678e-02	ci left: 6.827458e-01	ci right 7.009424e-01	k: 6919	n:10000
KS ci ratio: 1.693157e-02	ci left: 8.355163e-01	ci right 8.498835e-01	k: 8428	n:10000
COX7B2   10000 perm   1 sec   (6698 perm/sec)   p_kst 8.428000e-01   p_cons 6.919000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000042/COX7B2.3_250_10000_0.8428_0.6919_1.png
                gene_name: COX7B2
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 45 percent done.
CP110
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.608320e-02	ci left: 6.839552e-01	ci right 7.021322e-01	k: 6931	n:10000
Cons ci ratio: 6.501604e-02	ci left: 2.578534e-01	ci right 2.752827e-01	k: 2665	n:10000
KS ci ratio: 4.627510e-02	ci left: 4.080090e-01	ci right 4.274390e-01	k: 4177	n:10000
CP110   10000 perm   2 sec   (5435 perm/sec)   p_kst 4.177000e-01   p_cons 2.665000e-01   p_joint 6.931000e-01

Outputting figure to mutsig2_images.part000000000042/CP110.3_3028_10000_0.4177_0.2665_0.6931.png
                gene_name: CP110
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 48 percent done.
CPA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.810422e-02	ci left: 5.042512e-01	ci right 5.239406e-01	k: 5141	n:10000
KS ci ratio: 1.790536e-02	ci left: 8.198482e-01	ci right 8.347606e-01	k: 8274	n:10000
CPA6   10000 perm   2 sec   (6062 perm/sec)   p_kst 8.274000e-01   p_cons 5.141000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000042/CPA6.3_1358_10000_0.8274_0.5141_1.png
                gene_name: CPA6
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
CPB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.006058e-01	ci left: 1.251301e-01	ci right 1.384852e-01	k: 1317	n:10000
Cons ci ratio: 5.970793e-02	ci left: 2.921179e-01	ci right 3.101981e-01	k: 3011	n:10000
KS ci ratio: 1.761150e-01	ci left: 4.303019e-02	ci right 5.143610e-02	k: 471	n:10000
CPB2   10000 perm   2 sec   (6401 perm/sec)   p_kst 4.710000e-02   p_cons 3.011000e-01   p_joint 1.317000e-01

Joint ci ratio: 8.215368e-02	ci left: 9.798590e-02	ci right 1.064301e-01	k: 2043	n:20000
Cons ci ratio: 4.213494e-02	ci left: 2.956411e-01	ci right 3.084165e-01	k: 6040	n:20000
KS ci ratio: 1.253735e-01	ci left: 4.367138e-02	ci right 4.956134e-02	k: 931	n:20000
CPB2   20000 perm   4 sec   (5613 perm/sec)   p_kst 4.655000e-02   p_cons 3.020000e-01   p_joint 1.021500e-01

Joint ci ratio: 7.739859e-02	ci left: 7.570995e-02	ci right 8.183858e-02	k: 2362	n:30000
Cons ci ratio: 3.519853e-02	ci left: 2.873228e-01	ci right 2.976508e-01	k: 8774	n:30000
KS ci ratio: 1.026376e-01	ci left: 4.398204e-02	ci right 4.877297e-02	k: 1390	n:30000
CPB2   30000 perm   6 sec   (5321 perm/sec)   p_kst 4.633333e-02   p_cons 2.924667e-01   p_joint 7.873333e-02

Joint ci ratio: 5.771530e-02	ci left: 1.004078e-01	ci right 1.063999e-01	k: 4135	n:40000
Cons ci ratio: 3.046076e-02	ci left: 2.883184e-01	ci right 2.972617e-01	k: 11711	n:40000
KS ci ratio: 8.820768e-02	ci left: 4.497090e-02	ci right 4.914517e-02	k: 1881	n:40000
CPB2   40000 perm   8 sec   (5118 perm/sec)   p_kst 4.702500e-02   p_cons 2.927750e-01   p_joint 1.033750e-01

Outputting figure to mutsig2_images.part000000000042/CPB2.3_1316_40000_0.047025_0.29278_0.10337.png
                gene_name: CPB2
               theta_stop: 0.088 
                    nperm: 40000 
                     p_ks: 0.047 
        ci_ks_bounds_left: 0.045 
       ci_ks_bounds_right: 0.049 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 52 percent done.
CPEB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.410433e-01	ci left: 6.662205e-02	ci right 7.682914e-02	k: 716	n:10000
Cons ci ratio: 1.117267e-01	ci left: 1.034441e-01	ci right 1.157844e-01	k: 1095	n:10000
KS ci ratio: 1.410433e-01	ci left: 6.662205e-02	ci right 7.682914e-02	k: 716	n:10000
CPEB4   10000 perm   2 sec   (5673 perm/sec)   p_kst 7.160000e-02   p_cons 1.095000e-01   p_joint 7.160000e-02

Joint ci ratio: 5.881266e-02	ci left: 1.763775e-01	ci right 1.871151e-01	k: 3634	n:20000
Cons ci ratio: 7.810667e-02	ci left: 1.074644e-01	ci right 1.162488e-01	k: 2236	n:20000
KS ci ratio: 1.002630e-01	ci left: 6.742937e-02	ci right 7.459595e-02	k: 1419	n:20000
CPEB4   20000 perm   4 sec   (5043 perm/sec)   p_kst 7.095000e-02   p_cons 1.118000e-01   p_joint 1.817000e-01

Joint ci ratio: 6.397296e-02	ci left: 1.076636e-01	ci right 1.148119e-01	k: 3336	n:30000
Cons ci ratio: 6.429861e-02	ci left: 1.066778e-01	ci right 1.137979e-01	k: 3306	n:30000
KS ci ratio: 8.023455e-02	ci left: 7.073537e-02	ci right 7.668083e-02	k: 2210	n:30000
CPEB4   30000 perm   6 sec   (4826 perm/sec)   p_kst 7.366667e-02   p_cons 1.102000e-01   p_joint 1.112000e-01

Outputting figure to mutsig2_images.part000000000042/CPEB4.3_2230_30000_0.073667_0.1102_0.1112.png
                gene_name: CPEB4
               theta_stop: 0.080 
                    nperm: 30000 
                     p_ks: 0.074 
        ci_ks_bounds_left: 0.071 
       ci_ks_bounds_right: 0.077 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 55 percent done.
CPPED1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.336559e-01	ci left: 7.388330e-02	ci right 8.456334e-02	k: 791	n:10000
Cons ci ratio: 9.510880e-02	ci left: 1.382511e-01	ci right 1.521563e-01	k: 1451	n:10000
KS ci ratio: 2.571973e-01	ci left: 1.977670e-02	ci right 2.570584e-02	k: 226	n:10000
CPPED1   10000 perm   2 sec   (6593 perm/sec)   p_kst 2.260000e-02   p_cons 1.451000e-01   p_joint 7.910000e-02

Joint ci ratio: 1.457587e-01	ci left: 3.235107e-02	ci right 3.748530e-02	k: 697	n:20000
Cons ci ratio: 6.756650e-02	ci left: 1.391612e-01	ci right 1.489425e-01	k: 2880	n:20000
KS ci ratio: 1.812584e-01	ci left: 2.077592e-02	ci right 2.496439e-02	k: 456	n:20000
CPPED1   20000 perm   3 sec   (5766 perm/sec)   p_kst 2.280000e-02   p_cons 1.440000e-01   p_joint 3.485000e-02

Joint ci ratio: 1.305713e-01	ci left: 2.725927e-02	ci right 3.109930e-02	k: 874	n:30000
Cons ci ratio: 5.545705e-02	ci left: 1.387931e-01	ci right 1.467429e-01	k: 4282	n:30000
KS ci ratio: 1.497398e-01	ci left: 2.065885e-02	ci right 2.403454e-02	k: 669	n:30000
CPPED1   30000 perm   6 sec   (5450 perm/sec)   p_kst 2.230000e-02   p_cons 1.427333e-01   p_joint 2.913333e-02

Joint ci ratio: 1.298525e-01	ci left: 2.082683e-02	ci right 2.374309e-02	k: 890	n:40000
Cons ci ratio: 4.817835e-02	ci left: 1.385682e-01	ci right 1.454339e-01	k: 5679	n:40000
KS ci ratio: 1.303773e-01	ci left: 2.065741e-02	ci right 2.356254e-02	k: 883	n:40000
CPPED1   40000 perm   8 sec   (5245 perm/sec)   p_kst 2.207500e-02   p_cons 1.419750e-01   p_joint 2.225000e-02

Joint ci ratio: 1.202231e-01	ci left: 1.956696e-02	ci right 2.208911e-02	k: 1040	n:50000
Cons ci ratio: 4.309917e-02	ci left: 1.388919e-01	ci right 1.450297e-01	k: 7097	n:50000
KS ci ratio: 1.175412e-01	ci left: 2.047956e-02	ci right 2.305638e-02	k: 1087	n:50000
CPPED1   50000 perm   10 sec   (5092 perm/sec)   p_kst 2.174000e-02   p_cons 1.419400e-01   p_joint 2.080000e-02

Joint ci ratio: 1.164043e-01	ci left: 1.746917e-02	ci right 1.964442e-02	k: 1112	n:60000
Cons ci ratio: 3.939147e-02	ci left: 1.388690e-01	ci right 1.444657e-01	k: 8499	n:60000
KS ci ratio: 1.082619e-01	ci left: 2.022448e-02	ci right 2.255547e-02	k: 1282	n:60000
CPPED1   60000 perm   12 sec   (4959 perm/sec)   p_kst 2.136667e-02   p_cons 1.416500e-01   p_joint 1.853333e-02

Joint ci ratio: 9.730944e-02	ci left: 2.155351e-02	ci right 2.377202e-02	k: 1585	n:70000
Cons ci ratio: 3.639181e-02	ci left: 1.395921e-01	ci right 1.447805e-01	k: 9952	n:70000
KS ci ratio: 1.002254e-01	ci left: 2.031283e-02	ci right 2.246996e-02	k: 1496	n:70000
CPPED1   70000 perm   14 sec   (4835 perm/sec)   p_kst 2.137143e-02   p_cons 1.421714e-01   p_joint 2.264286e-02

Joint ci ratio: 9.275611e-02	ci left: 2.082363e-02	ci right 2.286125e-02	k: 1746	n:80000
Cons ci ratio: 3.392654e-02	ci left: 1.405809e-01	ci right 1.454450e-01	k: 11440	n:80000
KS ci ratio: 9.397313e-02	ci left: 2.028621e-02	ci right 2.229871e-02	k: 1702	n:80000
CPPED1   80000 perm   17 sec   (4726 perm/sec)   p_kst 2.127500e-02   p_cons 1.430000e-01   p_joint 2.182500e-02

Outputting figure to mutsig2_images.part000000000042/CPPED1.3_961_80000_0.021275_0.143_0.021825.png
                gene_name: CPPED1
               theta_stop: 0.094 
                    nperm: 80000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.022 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.022 
     ci_joint_bounds_left: 0.021 
    ci_joint_bounds_right: 0.023 

Current progress: 57 percent done.
CPSF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.118453e-02	ci left: 3.601284e-01	ci right 3.791476e-01	k: 3696	n:10000
KS ci ratio: 3.174386e-02	ci left: 5.942350e-01	ci right 6.135045e-01	k: 6039	n:10000
CPSF2   10000 perm   2 sec   (5794 perm/sec)   p_kst 6.039000e-01   p_cons 3.696000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000042/CPSF2.3_2405_10000_0.6039_0.3696_1.png
                gene_name: CPSF2
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 59 percent done.
CPT1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.287760e-02	ci left: 4.454038e-01	ci right 4.650223e-01	k: 4552	n:10000
KS ci ratio: 3.521033e-02	ci left: 5.435919e-01	ci right 5.631770e-01	k: 5534	n:10000
CPT1B   10000 perm   2 sec   (5821 perm/sec)   p_kst 5.534000e-01   p_cons 4.552000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000042/CPT1B.3_2391_10000_0.5534_0.4552_1.png
                gene_name: CPT1B
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 61 percent done.
CPT1C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.751786e-02	ci left: 1.322754e-01	ci right 1.459356e-01	k: 1390	n:10000
Cons ci ratio: 1.204951e-01	ci left: 8.990526e-02	ci right 1.015315e-01	k: 956	n:10000
KS ci ratio: 6.301540e-02	ci left: 2.701258e-01	ci right 2.878031e-01	k: 2789	n:10000
CPT1C   10000 perm   2 sec   (5877 perm/sec)   p_kst 2.789000e-01   p_cons 9.560000e-02   p_joint 1.390000e-01

Joint ci ratio: 7.229778e-02	ci left: 1.234976e-01	ci right 1.328108e-01	k: 2562	n:20000
Cons ci ratio: 8.430639e-02	ci left: 9.342261e-02	ci right 1.016948e-01	k: 1950	n:20000
KS ci ratio: 4.386048e-02	ci left: 2.790981e-01	ci right 2.916644e-01	k: 5707	n:20000
CPT1C   20000 perm   4 sec   (5275 perm/sec)   p_kst 2.853500e-01   p_cons 9.750000e-02   p_joint 1.281000e-01

Outputting figure to mutsig2_images.part000000000042/CPT1C.3_2484_20000_0.28535_0.0975_0.1281.png
                gene_name: CPT1C
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.098 
      ci_cons_bounds_left: 0.093 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 64 percent done.
CORO6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.680851e-02	ci left: 2.474683e-01	ci right 2.646740e-01	k: 2560	n:10000
KS ci ratio: 1.829303e-01	ci left: 3.987233e-02	ci right 4.799604e-02	k: 438	n:10000
CORO6   10000 perm   2 sec   (6493 perm/sec)   p_kst 4.380000e-02   p_cons 2.560000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 4.698830e-02	ci left: 2.520459e-01	ci right 2.642245e-01	k: 5162	n:20000
KS ci ratio: 1.292772e-01	ci left: 4.110215e-02	ci right 4.683139e-02	k: 878	n:20000
CORO6   20000 perm   4 sec   (5682 perm/sec)   p_kst 4.390000e-02   p_cons 2.581000e-01   p_joint 1

Joint ci ratio: 8.377823e-03	ci left: 8.757627e-01	ci right 8.831636e-01	k: 26385	n:30000
Cons ci ratio: 3.826764e-02	ci left: 2.541489e-01	ci right 2.640978e-01	k: 7773	n:30000
KS ci ratio: 1.058706e-01	ci left: 4.138187e-02	ci right 4.604035e-02	k: 1310	n:30000
CORO6   30000 perm   6 sec   (5364 perm/sec)   p_kst 4.366667e-02   p_cons 2.591000e-01   p_joint 8.795000e-01

Joint ci ratio: 2.119036e-02	ci left: 4.561555e-01	ci right 4.659502e-01	k: 18442	n:40000
Cons ci ratio: 3.305112e-02	ci left: 2.558557e-01	ci right 2.644792e-01	k: 10406	n:40000
KS ci ratio: 9.246404e-02	ci left: 4.100833e-02	ci right 4.500836e-02	k: 1719	n:40000
CORO6   40000 perm   8 sec   (5155 perm/sec)   p_kst 4.297500e-02   p_cons 2.601500e-01   p_joint 4.610500e-01

Outputting figure to mutsig2_images.part000000000042/CORO6.2_1459_40000_0.042975_0.26015_0.46105.png
                gene_name: CORO6
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.043 
        ci_ks_bounds_left: 0.041 
       ci_ks_bounds_right: 0.045 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.47 

Current progress: 66 percent done.
COX19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.537862e-01	ci left: 2.033901e-02	ci right 2.634310e-02	k: 232	n:10000
Cons ci ratio: 1.540909e-02	ci left: 8.593708e-01	ci right 8.728151e-01	k: 8662	n:10000
KS ci ratio: 3.666552e-01	ci left: 9.230735e-03	ci right 1.346114e-02	k: 112	n:10000
COX19   10000 perm   1 sec   (7387 perm/sec)   p_kst 1.120000e-02   p_cons 8.662000e-01   p_joint 2.320000e-02

Joint ci ratio: 2.369421e-01	ci left: 1.189959e-02	ci right 1.514412e-02	k: 269	n:20000
Cons ci ratio: 1.077012e-02	ci left: 8.640930e-01	ci right 8.734995e-01	k: 17377	n:20000
KS ci ratio: 2.677895e-01	ci left: 9.180527e-03	ci right 1.206441e-02	k: 211	n:20000
COX19   20000 perm   3 sec   (6352 perm/sec)   p_kst 1.055000e-02   p_cons 8.688500e-01   p_joint 1.345000e-02

Joint ci ratio: 1.788124e-01	ci left: 1.435554e-02	ci right 1.720602e-02	k: 472	n:30000
Cons ci ratio: 8.722006e-03	ci left: 8.668506e-01	ci right 8.744775e-01	k: 26121	n:30000
KS ci ratio: 2.286735e-01	ci left: 8.590510e-03	ci right 1.083930e-02	k: 290	n:30000
COX19   30000 perm   5 sec   (5965 perm/sec)   p_kst 9.666667e-03   p_cons 8.707000e-01   p_joint 1.573333e-02

Joint ci ratio: 1.563324e-01	ci left: 1.426412e-02	ci right 1.670696e-02	k: 618	n:40000
Cons ci ratio: 7.544140e-03	ci left: 8.676504e-01	ci right 8.742457e-01	k: 34839	n:40000
KS ci ratio: 2.022928e-01	ci left: 8.358856e-03	ci right 1.026340e-02	k: 371	n:40000
COX19   40000 perm   7 sec   (5701 perm/sec)   p_kst 9.275000e-03   p_cons 8.709750e-01   p_joint 1.545000e-02

Joint ci ratio: 1.551880e-01	ci left: 1.162147e-02	ci right 1.359572e-02	k: 629	n:50000
Cons ci ratio: 6.731253e-03	ci left: 8.685554e-01	ci right 8.744414e-01	k: 43576	n:50000
KS ci ratio: 1.825282e-01	ci left: 8.305354e-03	ci right 9.992373e-03	k: 456	n:50000
COX19   50000 perm   9 sec   (5525 perm/sec)   p_kst 9.120000e-03   p_cons 8.715200e-01   p_joint 1.258000e-02

Joint ci ratio: 1.406342e-01	ci left: 1.188366e-02	ci right 1.369725e-02	k: 766	n:60000
Cons ci ratio: 6.132468e-03	ci left: 8.692668e-01	ci right 8.746305e-01	k: 52318	n:60000
KS ci ratio: 1.647256e-01	ci left: 8.579401e-03	ci right 1.013528e-02	k: 560	n:60000
COX19   60000 perm   11 sec   (5374 perm/sec)   p_kst 9.333333e-03   p_cons 8.719667e-01   p_joint 1.276667e-02

Joint ci ratio: 1.817708e-01	ci left: 5.999905e-03	ci right 7.212966e-03	k: 461	n:70000
Cons ci ratio: 5.689033e-03	ci left: 8.690128e-01	ci right 8.739849e-01	k: 61006	n:70000
KS ci ratio: 1.530384e-01	ci left: 8.574699e-03	ci right 1.000928e-02	k: 649	n:70000
COX19   70000 perm   13 sec   (5231 perm/sec)   p_kst 9.271429e-03   p_cons 8.715143e-01   p_joint 6.585714e-03

Joint ci ratio: 1.684329e-01	ci left: 6.158372e-03	ci right 7.302841e-03	k: 537	n:80000
Cons ci ratio: 5.315687e-03	ci left: 8.694259e-01	ci right 8.740722e-01	k: 69741	n:80000
KS ci ratio: 1.420828e-01	ci left: 8.754971e-03	ci right 1.010596e-02	k: 753	n:80000
COX19   80000 perm   16 sec   (5101 perm/sec)   p_kst 9.412500e-03   p_cons 8.717625e-01   p_joint 6.712500e-03

Joint ci ratio: 1.135107e-01	ci left: 1.233492e-02	ci right 1.383004e-02	k: 1176	n:90000
Cons ci ratio: 5.001855e-03	ci left: 8.700012e-01	ci right 8.743748e-01	k: 78498	n:90000
KS ci ratio: 1.326412e-01	ci left: 8.973248e-03	ci right 1.025866e-02	k: 864	n:90000
COX19   90000 perm   18 sec   (4985 perm/sec)   p_kst 9.600000e-03   p_cons 8.722000e-01   p_joint 1.306667e-02

Joint ci ratio: 1.078437e-01	ci left: 1.233629e-02	ci right 1.375217e-02	k: 1303	n:100000
Cons ci ratio: 4.750911e-03	ci left: 8.698431e-01	ci right 8.739953e-01	k: 87193	n:100000
KS ci ratio: 1.253817e-01	ci left: 9.072726e-03	ci right 1.029597e-02	k: 967	n:100000
COX19   100000 perm   21 sec   (4871 perm/sec)   p_kst 9.670000e-03   p_cons 8.719300e-01   p_joint 1.303000e-02

Joint ci ratio: 1.020848e-01	ci left: 1.255158e-02	ci right 1.391063e-02	k: 1454	n:110000
Cons ci ratio: 4.534472e-03	ci left: 8.697094e-01	ci right 8.736710e-01	k: 95887	n:110000
KS ci ratio: 1.193094e-01	ci left: 9.138042e-03	ci right 1.030621e-02	k: 1068	n:110000
COX19   110000 perm   23 sec   (4758 perm/sec)   p_kst 9.709091e-03   p_cons 8.717000e-01   p_joint 1.321818e-02

Joint ci ratio: 9.734408e-02	ci left: 1.268386e-02	ci right 1.398981e-02	k: 1599	n:120000
Cons ci ratio: 4.348372e-03	ci left: 8.694341e-01	ci right 8.732312e-01	k: 104561	n:120000
KS ci ratio: 1.139434e-01	ci left: 9.209858e-03	ci right 1.033069e-02	k: 1171	n:120000
COX19   120000 perm   26 sec   (4657 perm/sec)   p_kst 9.758333e-03   p_cons 8.713417e-01   p_joint 1.332500e-02

Joint ci ratio: 1.290628e-01	ci left: 6.591193e-03	ci right 7.507925e-03	k: 915	n:130000
Cons ci ratio: 4.170523e-03	ci left: 8.699009e-01	ci right 8.735440e-01	k: 113325	n:130000
KS ci ratio: 1.094588e-01	ci left: 9.234201e-03	ci right 1.031091e-02	k: 1269	n:130000
COX19   130000 perm   29 sec   (4558 perm/sec)   p_kst 9.761538e-03   p_cons 8.717308e-01   p_joint 7.038462e-03

Joint ci ratio: 8.931833e-02	ci left: 1.296488e-02	ci right 1.418396e-02	k: 1899	n:140000
Cons ci ratio: 4.014102e-03	ci left: 8.702315e-01	ci right 8.737388e-01	k: 122079	n:140000
KS ci ratio: 1.043916e-01	ci left: 9.450608e-03	ci right 1.049841e-02	k: 1395	n:140000
COX19   140000 perm   31 sec   (4464 perm/sec)   p_kst 9.964286e-03   p_cons 8.719929e-01   p_joint 1.356429e-02

Joint ci ratio: 8.632658e-02	ci left: 1.297427e-02	ci right 1.415131e-02	k: 2033	n:150000
Cons ci ratio: 3.882726e-03	ci left: 8.700172e-01	ci right 8.734084e-01	k: 130758	n:150000
KS ci ratio: 1.005372e-01	ci left: 9.528633e-03	ci right 1.054377e-02	k: 1504	n:150000
COX19   150000 perm   34 sec   (4374 perm/sec)   p_kst 1.002667e-02   p_cons 8.717200e-01   p_joint 1.355333e-02

Joint ci ratio: 8.349957e-02	ci left: 1.301981e-02	ci right 1.416041e-02	k: 2173	n:160000
Cons ci ratio: 3.757980e-03	ci left: 8.701583e-01	ci right 8.734407e-01	k: 139489	n:160000
KS ci ratio: 9.729372e-02	ci left: 9.554830e-03	ci right 1.053805e-02	k: 1606	n:160000
COX19   160000 perm   37 sec   (4290 perm/sec)   p_kst 1.003750e-02   p_cons 8.718063e-01   p_joint 1.358125e-02

Outputting figure to mutsig2_images.part000000000042/COX19.2_285_160000_0.010037_0.87181_0.013581.png
                gene_name: COX19
               theta_stop: 0.097 
                    nperm: 160000 
                     p_ks: 0.010 
        ci_ks_bounds_left: 0.0096 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.014 
     ci_joint_bounds_left: 0.013 
    ci_joint_bounds_right: 0.014 

Current progress: 68 percent done.
COX7A2L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.990641e-02	ci left: 7.869522e-01	ci right 8.028756e-01	k: 7950	n:10000
Cons ci ratio: 2.556943e-02	ci left: 6.924235e-01	ci right 7.104591e-01	k: 7015	n:10000
KS ci ratio: 2.292739e-02	ci left: 7.364378e-01	ci right 7.536193e-01	k: 7451	n:10000
COX7A2L   10000 perm   1 sec   (7701 perm/sec)   p_kst 7.451000e-01   p_cons 7.015000e-01   p_joint 7.950000e-01

Outputting figure to mutsig2_images.part000000000042/COX7A2L.2_357_10000_0.7451_0.7015_0.795.png
                gene_name: COX7A2L
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 70 percent done.
CP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.982611e-02	ci left: 6.237671e-01	ci right 6.427552e-01	k: 6333	n:10000
KS ci ratio: 1.682928e-02	ci left: 8.371455e-01	ci right 8.514533e-01	k: 8444	n:10000
CP   10000 perm   2 sec   (5612 perm/sec)   p_kst 8.444000e-01   p_cons 6.333000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000042/CP.2_3274_10000_0.8444_0.6333_1.png
                gene_name: CP
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
CPA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.096209e-02	ci left: 2.254342e-01	ci right 2.421211e-01	k: 2337	n:10000
Cons ci ratio: 4.133093e-03	ci left: 9.868662e-01	ci right 9.910417e-01	k: 9891	n:10000
KS ci ratio: 2.549086e-01	ci left: 2.015152e-02	ci right 2.613074e-02	k: 230	n:10000
CPA1   10000 perm   2 sec   (6547 perm/sec)   p_kst 2.300000e-02   p_cons 9.891000e-01   p_joint 2.337000e-01

Joint ci ratio: 4.264507e-02	ci left: 2.906225e-01	ci right 3.033366e-01	k: 5939	n:20000
Cons ci ratio: 3.111871e-03	ci left: 9.859684e-01	ci right 9.890875e-01	k: 19752	n:20000
KS ci ratio: 1.831122e-01	ci left: 2.034603e-02	ci right 2.449443e-02	k: 447	n:20000
CPA1   20000 perm   4 sec   (5689 perm/sec)   p_kst 2.235000e-02   p_cons 9.876000e-01   p_joint 2.969500e-01

Joint ci ratio: 2.639694e-02	ci left: 4.180327e-01	ci right 4.292487e-01	k: 12709	n:30000
Cons ci ratio: 2.415723e-03	ci left: 9.875089e-01	ci right 9.899284e-01	k: 29663	n:30000
KS ci ratio: 1.521975e-01	ci left: 1.998476e-02	ci right 2.330878e-02	k: 648	n:30000
CPA1   30000 perm   6 sec   (5384 perm/sec)   p_kst 2.160000e-02   p_cons 9.887667e-01   p_joint 4.236333e-01

Joint ci ratio: 6.042402e-02	ci left: 9.231614e-02	ci right 9.809278e-02	k: 3807	n:40000
Cons ci ratio: 2.097593e-03	ci left: 9.876154e-01	ci right 9.897127e-01	k: 39548	n:40000
KS ci ratio: 1.309847e-01	ci left: 2.046382e-02	ci right 2.335617e-02	k: 875	n:40000
CPA1   40000 perm   8 sec   (5168 perm/sec)   p_kst 2.187500e-02   p_cons 9.887000e-01   p_joint 9.517500e-02

Joint ci ratio: 3.634043e-02	ci left: 1.853382e-01	ci right 1.922180e-01	k: 9438	n:50000
Cons ci ratio: 1.981832e-03	ci left: 9.863835e-01	ci right 9.883593e-01	k: 49370	n:50000
KS ci ratio: 1.186042e-01	ci left: 2.011056e-02	ci right 2.266543e-02	k: 1068	n:50000
CPA1   50000 perm   10 sec   (5018 perm/sec)   p_kst 2.136000e-02   p_cons 9.874000e-01   p_joint 1.887600e-01

Joint ci ratio: 4.054640e-02	ci left: 1.320437e-01	ci right 1.375250e-01	k: 8086	n:60000
Cons ci ratio: 1.813764e-03	ci left: 9.864062e-01	ci right 9.882129e-01	k: 59240	n:60000
KS ci ratio: 1.081328e-01	ci left: 2.027316e-02	ci right 2.260679e-02	k: 1285	n:60000
CPA1   60000 perm   12 sec   (4886 perm/sec)   p_kst 2.141667e-02   p_cons 9.873333e-01   p_joint 1.347667e-01

Joint ci ratio: 2.714208e-02	ci left: 2.264459e-01	ci right 2.326909e-01	k: 16069	n:70000
Cons ci ratio: 1.704117e-03	ci left: 9.860890e-01	ci right 9.877845e-01	k: 69087	n:70000
KS ci ratio: 1.005002e-01	ci left: 2.020135e-02	ci right 2.235287e-02	k: 1488	n:70000
CPA1   70000 perm   15 sec   (4770 perm/sec)   p_kst 2.125714e-02   p_cons 9.869571e-01   p_joint 2.295571e-01

Joint ci ratio: 2.825373e-02	ci left: 1.912026e-01	ci right 1.966946e-01	k: 15515	n:80000
Cons ci ratio: 1.589750e-03	ci left: 9.862166e-01	ci right 9.877977e-01	k: 78962	n:80000
KS ci ratio: 9.374840e-02	ci left: 2.038391e-02	ci right 2.240101e-02	k: 1710	n:80000
CPA1   80000 perm   17 sec   (4633 perm/sec)   p_kst 2.137500e-02   p_cons 9.870250e-01   p_joint 1.939375e-01

Outputting figure to mutsig2_images.part000000000042/CPA1.2_1300_80000_0.021375_0.98703_0.19394.png
                gene_name: CPA1
               theta_stop: 0.094 
                    nperm: 80000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.022 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 75 percent done.
CPA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.468661e-03	ci left: 9.781297e-01	ci right 9.835850e-01	k: 9810	n:10000
Cons ci ratio: 2.621199e-02	ci left: 6.818387e-01	ci right 7.000499e-01	k: 6910	n:10000
KS ci ratio: 2.631636e-02	ci left: 6.801255e-01	ci right 6.983641e-01	k: 6893	n:10000
CPA4   10000 perm   2 sec   (6594 perm/sec)   p_kst 6.893000e-01   p_cons 6.910000e-01   p_joint 9.810000e-01

Outputting figure to mutsig2_images.part000000000042/CPA4.2_1310_10000_0.6893_0.691_0.981.png
                gene_name: CPA4
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 77 percent done.
CPEB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.563461e-03	ci left: 9.899424e-01	ci right 9.935624e-01	k: 9919	n:10000
Cons ci ratio: 1.572531e-01	ci left: 5.388306e-02	ci right 6.317620e-02	k: 584	n:10000
KS ci ratio: 8.902215e-02	ci left: 1.551222e-01	ci right 1.696750e-01	k: 1623	n:10000
CPEB2   10000 perm   2 sec   (5329 perm/sec)   p_kst 1.623000e-01   p_cons 5.840000e-02   p_joint 9.919000e-01

Joint ci ratio: 6.209628e-03	ci left: 9.492033e-01	ci right 9.551643e-01	k: 19045	n:20000
Cons ci ratio: 1.115521e-01	ci left: 5.489734e-02	ci right 6.143185e-02	k: 1162	n:20000
KS ci ratio: 6.323993e-02	ci left: 1.560296e-01	ci right 1.662691e-01	k: 3222	n:20000
CPEB2   20000 perm   4 sec   (4790 perm/sec)   p_kst 1.611000e-01   p_cons 5.810000e-02   p_joint 9.522500e-01

Joint ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
Cons ci ratio: 9.106868e-02	ci left: 5.551169e-02	ci right 6.084094e-02	k: 1744	n:30000
KS ci ratio: 5.154334e-02	ci left: 1.574511e-01	ci right 1.658146e-01	k: 4848	n:30000
CPEB2   30000 perm   7 sec   (4558 perm/sec)   p_kst 1.616000e-01   p_cons 5.813333e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000042/CPEB2.2_3162_30000_0.1616_0.058133_1.png
                gene_name: CPEB2
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.058 
      ci_cons_bounds_left: 0.056 
     ci_cons_bounds_right: 0.061 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
CPEB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.386300e-02	ci left: 5.628341e-01	ci right 5.823236e-01	k: 5726	n:10000
KS ci ratio: 3.251226e-02	ci left: 5.826932e-01	ci right 6.020529e-01	k: 5924	n:10000
CPEB3   10000 perm   2 sec   (5834 perm/sec)   p_kst 5.924000e-01   p_cons 5.726000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000042/CPEB3.2_2160_10000_0.5924_0.5726_1.png
                gene_name: CPEB3
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
CPN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.973867e-02	ci left: 4.832543e-01	ci right 5.029497e-01	k: 4931	n:10000
Cons ci ratio: 3.862612e-02	ci left: 4.974503e-01	ci right 5.171454e-01	k: 5073	n:10000
KS ci ratio: 5.595672e-02	ci left: 3.198913e-01	ci right 3.384084e-01	k: 3291	n:10000
CPN2   10000 perm   2 sec   (6188 perm/sec)   p_kst 3.291000e-01   p_cons 5.073000e-01   p_joint 4.931000e-01

Outputting figure to mutsig2_images.part000000000042/CPN2.2_1642_10000_0.3291_0.5073_0.4931.png
                gene_name: CPN2
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 84 percent done.
CPNE4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.274638e-02	ci left: 7.394702e-01	ci right 7.565851e-01	k: 7481	n:10000
Cons ci ratio: 2.305278e-01	ci left: 2.485465e-02	ci right 3.142409e-02	k: 280	n:10000
KS ci ratio: 1.726867e-01	ci left: 4.475507e-02	ci right 5.331009e-02	k: 489	n:10000
CPNE4   10000 perm   2 sec   (6267 perm/sec)   p_kst 4.890000e-02   p_cons 2.800000e-02   p_joint 7.481000e-01

Joint ci ratio: 2.901333e-02	ci left: 4.702065e-01	ci right 4.841002e-01	k: 9543	n:20000
Cons ci ratio: 1.640659e-01	ci left: 2.546943e-02	ci right 3.006924e-02	k: 554	n:20000
KS ci ratio: 1.229707e-01	ci left: 4.536948e-02	ci right 5.136270e-02	k: 966	n:20000
CPNE4   20000 perm   4 sec   (5502 perm/sec)   p_kst 4.830000e-02   p_cons 2.770000e-02   p_joint 4.771500e-01

Joint ci ratio: 1.257749e-02	ci left: 7.591865e-01	ci right 7.688290e-01	k: 22921	n:30000
Cons ci ratio: 1.339189e-01	ci left: 2.590436e-02	ci right 2.965451e-02	k: 832	n:30000
KS ci ratio: 1.002426e-01	ci left: 4.606374e-02	ci right 5.095750e-02	k: 1454	n:30000
CPNE4   30000 perm   6 sec   (5231 perm/sec)   p_kst 4.846667e-02   p_cons 2.773333e-02   p_joint 7.640333e-01

Joint ci ratio: 1.473478e-02	ci left: 6.341705e-01	ci right 6.436093e-01	k: 25556	n:40000
Cons ci ratio: 1.169378e-01	ci left: 2.572495e-02	ci right 2.894417e-02	k: 1092	n:40000
KS ci ratio: 8.709646e-02	ci left: 4.609687e-02	ci right 5.031903e-02	k: 1927	n:40000
CPNE4   40000 perm   8 sec   (5048 perm/sec)   p_kst 4.817500e-02   p_cons 2.730000e-02   p_joint 6.389000e-01

Joint ci ratio: 9.705021e-03	ci left: 7.616805e-01	ci right 7.691287e-01	k: 38271	n:50000
Cons ci ratio: 1.047997e-01	ci left: 2.579170e-02	ci right 2.866355e-02	k: 1360	n:50000
KS ci ratio: 7.781685e-02	ci left: 4.641738e-02	ci right 5.019528e-02	k: 2414	n:50000
CPNE4   50000 perm   10 sec   (4902 perm/sec)   p_kst 4.828000e-02   p_cons 2.720000e-02   p_joint 7.654200e-01

Joint ci ratio: 1.292669e-02	ci left: 6.012254e-01	ci right 6.090645e-01	k: 36309	n:60000
Cons ci ratio: 9.493042e-02	ci left: 2.632000e-02	ci right 2.895929e-02	k: 1657	n:60000
KS ci ratio: 7.119186e-02	ci left: 4.638503e-02	ci right 4.982552e-02	k: 2885	n:60000
CPNE4   60000 perm   13 sec   (4780 perm/sec)   p_kst 4.808333e-02   p_cons 2.761667e-02   p_joint 6.051500e-01

Outputting figure to mutsig2_images.part000000000042/CPNE4.2_1734_60000_0.048083_0.027617_0.60515.png
                gene_name: CPNE4
               theta_stop: 0.095 
                    nperm: 60000 
                     p_ks: 0.048 
        ci_ks_bounds_left: 0.046 
       ci_ks_bounds_right: 0.050 
                   p_cons: 0.028 
      ci_cons_bounds_left: 0.026 
     ci_cons_bounds_right: 0.029 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.61 

Current progress: 86 percent done.
CPOX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.462890e-02	ci left: 8.712206e-01	ci right 8.841585e-01	k: 8778	n:10000
Cons ci ratio: 2.583216e-02	ci left: 6.880881e-01	ci right 7.061970e-01	k: 6972	n:10000
KS ci ratio: 7.120058e-02	ci left: 2.242494e-01	ci right 2.409066e-01	k: 2325	n:10000
CPOX   10000 perm   2 sec   (6322 perm/sec)   p_kst 2.325000e-01   p_cons 6.972000e-01   p_joint 8.778000e-01

Outputting figure to mutsig2_images.part000000000042/CPOX.2_1393_10000_0.2325_0.6972_0.8778.png
                gene_name: CPOX
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 89 percent done.
CPSF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.012969e-02	ci left: 1.853052e-01	ci right 2.008740e-01	k: 1930	n:10000
KS ci ratio: 3.954840e-02	ci left: 4.856531e-01	ci right 5.053495e-01	k: 4955	n:10000
CPSF3   10000 perm   2 sec   (6002 perm/sec)   p_kst 4.955000e-01   p_cons 1.930000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000042/CPSF3.2_2127_10000_0.4955_0.193_1.png
                gene_name: CPSF3
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
CPSF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.074522e-02	ci left: 4.707644e-01	ci right 4.904469e-01	k: 4806	n:10000
KS ci ratio: 2.562438e-02	ci left: 6.915160e-01	ci right 7.095671e-01	k: 7006	n:10000
CPSF4   10000 perm   1 sec   (7222 perm/sec)   p_kst 7.006000e-01   p_cons 4.806000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000042/CPSF4.2_842_10000_0.7006_0.4806_1.png
                gene_name: CPSF4
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
CPSF6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.195589e-02	ci left: 7.527183e-01	ci right 7.695293e-01	k: 7612	n:10000
KS ci ratio: 4.608541e-02	ci left: 4.100020e-01	ci right 4.294448e-01	k: 4197	n:10000
CPSF6   10000 perm   2 sec   (6234 perm/sec)   p_kst 4.197000e-01   p_cons 7.612000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000042/CPSF6.2_1692_10000_0.4197_0.7612_1.png
                gene_name: CPSF6
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
CPSF7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.867131e-02	ci left: 8.073497e-01	ci right 8.226663e-01	k: 8151	n:10000
Cons ci ratio: 2.018688e-02	ci left: 7.822885e-01	ci right 7.983421e-01	k: 7904	n:10000
KS ci ratio: 3.565409e-02	ci left: 5.373814e-01	ci right 5.569911e-01	k: 5472	n:10000
CPSF7   10000 perm   1 sec   (6669 perm/sec)   p_kst 5.472000e-01   p_cons 7.904000e-01   p_joint 8.151000e-01

Outputting figure to mutsig2_images.part000000000042/CPSF7.2_1581_10000_0.5472_0.7904_0.8151.png
                gene_name: CPSF7
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 98 percent done.
CPT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.908499e-02	ci left: 8.005470e-01	ci right 8.160730e-01	k: 8084	n:10000
KS ci ratio: 4.969165e-02	ci left: 3.739550e-01	ci right 3.931129e-01	k: 3835	n:10000
CPT2   10000 perm   2 sec   (6118 perm/sec)   p_kst 3.835000e-01   p_cons 8.084000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000042/CPT2.2_1997_10000_0.3835_0.8084_1.png
                gene_name: CPT2
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000042
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 42 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1550>
Subject: Job 8003979: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1550>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000043> was used as the working directory.
Started at Sun Nov 11 15:05:00 2012
Results reported at Sun Nov 11 15:13:24 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000043.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000043.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 43  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000043.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    644.40 sec.
    Max Memory :      4766 MB
    Max Swap   :      7239 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
43
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 43
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 43: processing genes 3801 - 3890
Calculating significance of each gene.
Using projection method.
3801	CRABP1	2.996486e-01
3802	CRABP2	4.000325e-02
3803	CRADD	3.304446e-01
3804	CRAMP1L	9.747974e-01
3805	CRAT	1
3806	CRB1	1.184461e-07
3807	CRB2	6.693923e-01
3808	CRB3	1
3809	CRBN	1
3810	CRCP	8.022482e-02
3811	CRCT1	1
3812	CREB1	7.690625e-01
3813	CREB3	4.954975e-01
3814	CREB3L1	1
3815	CREB3L2	5.983050e-01
3816	CREB3L3	7.121787e-01
3817	CREB3L4	4.771269e-01
3818	CREB5	1
3819	CREBBP	6.795494e-01
3820	CREBL2	1
3821	CREBZF	1
3822	CREG1	1
3823	CREG2	4.005750e-01
3824	CRELD1	1
3825	CRELD2	2.919457e-01
3826	CREM	6.281497e-01
3827	CRH	1
3828	CRHBP	7.935201e-01
3829	CRHR1	6.898419e-01
3830	CRHR2	1.057865e-01
3831	CRIM1	8.528707e-01
3832	CRIP1	1
3833	CRIP2	3.252334e-01
3834	CRIP3	1
3835	CRIPAK	1
3836	CRIPT	1
3837	CRISP1	3.618663e-03
3838	CRISP2	1.878663e-02
3839	CRISP3	6.395018e-01
3840	CRISPLD1	1.773016e-01
3841	CRISPLD2	9.213530e-01
3842	CRK	1
3843	CRKL	1
3844	CRLF1	1
3845	CRLF2	1
3846	CRLF3	3.261489e-01
3847	CRLS1	5.899148e-01
3848	CRMP1	1.952722e-01
3849	CRNKL1	1.207849e-01
3850	CRNN	3.912952e-01
3851	CROCC	3.495635e-01
3852	CROT	3.736487e-03
3853	CRP	1.814431e-02
3854	CRTAC1	1.526842e-01
3855	CRTAM	1.271911e-01
3856	CRTAP	5.709349e-01
3857	CRTC1	1
3858	CRTC2	8.679171e-01
3859	CRTC3	8.514406e-01
3860	CRX	1
3861	CRY1	5.199707e-01
3862	CRY2	5.642229e-01
3863	CRYAA	3.782002e-01
3864	CRYAB	1
3865	CRYBA1	1
3866	CRYBA2	1
3867	CRYBA4	3.693992e-01
3868	CRYBB1	5.355319e-01
3869	CRYBB2	5.993725e-01
3870	CRYBB3	1
3871	CRYBG3	5.270234e-01
3872	CRYGA	2.987438e-02
3873	CRYGB	1
3874	CRYGC	1
3875	CRYGD	4.058847e-01
3876	CRYGN	2.854542e-01
3877	CRYGS	3.752394e-01
3878	CRYL1	8.099016e-02
3879	CRYM	2.311876e-01
3880	CRYZ	1.239852e-01
3881	CRYZL1	1
3882	CS	1
3883	CSAD	5.095329e-01
3884	CSAG1	1
3885	CSDA	1.020940e-02
3886	CSDC2	1
3887	CSDE1	7.944402e-01
3888	CSE1L	4.551428e-01
3889	CSF1	6.611282e-01
3890	CSF1R	7.929402e-01
Done

Running MutSig 2:
Scatter job 43: processing genes 3801 - 3890
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CRB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.403307e-02	ci left: 2.637906e-01	ci right 2.813421e-01	k: 2725	n:10000
Cons ci ratio: 1.915886e-02	ci left: 7.993290e-01	ci right 8.148917e-01	k: 8072	n:10000
KS ci ratio: 9.553251e-02	ci left: 1.371732e-01	ci right 1.510349e-01	k: 1440	n:10000
CRB1   10000 perm   3 sec   (3047 perm/sec)   p_kst 1.440000e-01   p_cons 8.072000e-01   p_joint 2.725000e-01

Outputting figure to mutsig2_images.part000000000043/CRB1.27_4269_10000_0.144_0.8072_0.2725.png
                gene_name: CRB1
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 2 percent done.
CREBBP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.236267e-02	ci left: 4.513922e-01	ci right 4.710304e-01	k: 4612	n:10000
Cons ci ratio: 7.951784e-02	ci left: 1.876681e-01	ci right 2.033097e-01	k: 1954	n:10000
KS ci ratio: 2.516108e-02	ci left: 6.991805e-01	ci right 7.170981e-01	k: 7082	n:10000
CREBBP   10000 perm   3 sec   (2942 perm/sec)   p_kst 7.082000e-01   p_cons 1.954000e-01   p_joint 4.612000e-01

Outputting figure to mutsig2_images.part000000000043/CREBBP.17_7453_10000_0.7082_0.1954_0.4612.png
                gene_name: CREBBP
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 5 percent done.
CROCC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.949951e-02	ci left: 6.288939e-01	ci right 6.478255e-01	k: 6384	n:10000
Cons ci ratio: 5.082408e-02	ci left: 3.634102e-01	ci right 3.824638e-01	k: 3729	n:10000
KS ci ratio: 2.275242e-02	ci left: 7.393691e-01	ci right 7.564862e-01	k: 7480	n:10000
CROCC   10000 perm   3 sec   (3553 perm/sec)   p_kst 7.480000e-01   p_cons 3.729000e-01   p_joint 6.384000e-01

Outputting figure to mutsig2_images.part000000000043/CROCC.9_6202_10000_0.748_0.3729_0.6384.png
                gene_name: CROCC
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 7 percent done.
CROT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.810422e-02	ci left: 5.042512e-01	ci right 5.239406e-01	k: 5141	n:10000
Cons ci ratio: 9.688766e-03	ci left: 9.377569e-01	ci right 9.469833e-01	k: 9425	n:10000
KS ci ratio: 5.310533e-02	ci left: 3.432297e-01	ci right 3.620562e-01	k: 3526	n:10000
CROT   10000 perm   2 sec   (4646 perm/sec)   p_kst 3.526000e-01   p_cons 9.425000e-01   p_joint 5.141000e-01

Outputting figure to mutsig2_images.part000000000043/CROT.8_1991_10000_0.3526_0.9425_0.5141.png
                gene_name: CROT
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 10 percent done.
CRNKL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.254876e-01	ci left: 8.329513e-02	ci right 9.454569e-02	k: 888	n:10000
Cons ci ratio: 4.170919e-03	ci left: 9.866479e-01	ci right 9.908601e-01	k: 9889	n:10000
KS ci ratio: 1.661901e-01	ci left: 4.830553e-02	ci right 5.715732e-02	k: 526	n:10000
CRNKL1   10000 perm   2 sec   (4564 perm/sec)   p_kst 5.260000e-02   p_cons 9.889000e-01   p_joint 8.880000e-02

Joint ci ratio: 7.957616e-02	ci left: 1.038780e-01	ci right 1.125363e-01	k: 2163	n:20000
Cons ci ratio: 3.028552e-03	ci left: 9.866585e-01	ci right 9.896971e-01	k: 19765	n:20000
KS ci ratio: 1.168165e-01	ci left: 5.017833e-02	ci right 5.645233e-02	k: 1065	n:20000
CRNKL1   20000 perm   5 sec   (4081 perm/sec)   p_kst 5.325000e-02   p_cons 9.882500e-01   p_joint 1.081500e-01

Joint ci ratio: 7.234807e-02	ci left: 8.589948e-02	ci right 9.238034e-02	k: 2673	n:30000
Cons ci ratio: 2.521927e-03	ci left: 9.864577e-01	ci right 9.889798e-01	k: 29633	n:30000
KS ci ratio: 9.569744e-02	ci left: 5.042643e-02	ci right 5.552724e-02	k: 1588	n:30000
CRNKL1   30000 perm   8 sec   (3905 perm/sec)   p_kst 5.293333e-02   p_cons 9.877667e-01   p_joint 8.910000e-02

Outputting figure to mutsig2_images.part000000000043/CRNKL1.6_2607_30000_0.052933_0.98777_0.0891.png
                gene_name: CRNKL1
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.053 
        ci_ks_bounds_left: 0.050 
       ci_ks_bounds_right: 0.056 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.089 
     ci_joint_bounds_left: 0.086 
    ci_joint_bounds_right: 0.092 

Current progress: 12 percent done.
CRISP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.188359e-02	ci left: 3.538645e-01	ci right 3.728152e-01	k: 3633	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
CRISP1   10000 perm   2 sec   (5550 perm/sec)   p_kst 1   p_cons 3.633000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000043/CRISP1.5_778_10000_1_0.3633_1.png
                gene_name: CRISP1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 14 percent done.
CRISP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.804081e-02	ci left: 3.899802e-01	ci right 4.092783e-01	k: 3996	n:10000
Cons ci ratio: 2.748407e-02	ci left: 6.610882e-01	ci right 6.796124e-01	k: 6704	n:10000
KS ci ratio: 9.659224e-02	ci left: 1.345280e-01	ci right 1.482816e-01	k: 1413	n:10000
CRISP3   10000 perm   2 sec   (5937 perm/sec)   p_kst 1.413000e-01   p_cons 6.704000e-01   p_joint 3.996000e-01

Outputting figure to mutsig2_images.part000000000043/CRISP3.5_766_10000_0.1413_0.6704_0.3996.png
                gene_name: CRISP3
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 17 percent done.
CSDA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.728785e-02	ci left: 8.298162e-01	ci right 8.443869e-01	k: 8372	n:10000
Cons ci ratio: 4.495000e-02	ci left: 4.221625e-01	ci right 4.416772e-01	k: 4319	n:10000
KS ci ratio: 1.884446e-02	ci left: 8.045063e-01	ci right 8.199113e-01	k: 8123	n:10000
CSDA   10000 perm   2 sec   (5413 perm/sec)   p_kst 8.123000e-01   p_cons 4.319000e-01   p_joint 8.372000e-01

Outputting figure to mutsig2_images.part000000000043/CSDA.5_1155_10000_0.8123_0.4319_0.8372.png
                gene_name: CSDA
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 19 percent done.
CSE1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.926994e-02	ci left: 6.325134e-01	ci right 6.514038e-01	k: 6420	n:10000
Cons ci ratio: 7.170281e-02	ci left: 2.217814e-01	ci right 2.383761e-01	k: 2300	n:10000
KS ci ratio: 3.568287e-02	ci left: 5.369808e-01	ci right 5.565920e-01	k: 5468	n:10000
CSE1L   10000 perm   2 sec   (5094 perm/sec)   p_kst 5.468000e-01   p_cons 2.300000e-01   p_joint 6.420000e-01

Outputting figure to mutsig2_images.part000000000043/CSE1L.5_3012_10000_0.5468_0.23_0.642.png
                gene_name: CSE1L
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 21 percent done.
CRISP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.333780e-02	ci left: 7.295662e-01	ci right 7.468948e-01	k: 7383	n:10000
KS ci ratio: 9.830757e-03	ci left: 9.360983e-01	ci right 9.454429e-01	k: 9409	n:10000
CRISP2   10000 perm   2 sec   (6478 perm/sec)   p_kst 9.409000e-01   p_cons 7.383000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000043/CRISP2.4_760_10000_0.9409_0.7383_1.png
                gene_name: CRISP2
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 24 percent done.
CRISPLD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.755337e-02	ci left: 8.255431e-01	ci right 8.402624e-01	k: 8330	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
CRISPLD1   10000 perm   2 sec   (5898 perm/sec)   p_kst 1   p_cons 8.330000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000043/CRISPLD1.4_1559_10000_1_0.833_1.png
                gene_name: CRISPLD1
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 26 percent done.
CRMP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.979647e-02	ci left: 7.887776e-01	ci right 8.046492e-01	k: 7968	n:10000
Cons ci ratio: 3.697613e-02	ci left: 5.192595e-01	ci right 5.389235e-01	k: 5291	n:10000
KS ci ratio: 2.091580e-02	ci left: 7.701294e-01	ci right 7.865082e-01	k: 7784	n:10000
CRMP1   10000 perm   2 sec   (5286 perm/sec)   p_kst 7.784000e-01   p_cons 5.291000e-01   p_joint 7.968000e-01

Outputting figure to mutsig2_images.part000000000043/CRMP1.4_2160_10000_0.7784_0.5291_0.7968.png
                gene_name: CRMP1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 29 percent done.
CRP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.164979e-02	ci left: 2.789393e-01	ci right 2.967844e-01	k: 2878	n:10000
Cons ci ratio: 1.417902e-01	ci left: 6.594512e-02	ci right 7.610649e-02	k: 709	n:10000
KS ci ratio: 1.140663e-02	ci left: 9.165701e-01	ci right 9.271826e-01	k: 9220	n:10000
CRP   10000 perm   2 sec   (5962 perm/sec)   p_kst 9.220000e-01   p_cons 7.090000e-02   p_joint 2.878000e-01

Joint ci ratio: 5.848845e-02	ci left: 1.780085e-01	ci right 1.887837e-01	k: 3667	n:20000
Cons ci ratio: 1.005299e-01	ci left: 6.708754e-02	ci right 7.423789e-02	k: 1412	n:20000
KS ci ratio: 7.894620e-03	ci left: 9.212625e-01	ci right 9.286134e-01	k: 18500	n:20000
CRP   20000 perm   4 sec   (5309 perm/sec)   p_kst 9.250000e-01   p_cons 7.060000e-02   p_joint 1.833500e-01

Joint ci ratio: 4.185119e-02	ci left: 2.215089e-01	ci right 2.310108e-01	k: 6787	n:30000
Cons ci ratio: 8.203089e-02	ci left: 6.782449e-02	ci right 7.365897e-02	k: 2121	n:30000
KS ci ratio: 6.463989e-03	ci left: 9.215542e-01	ci right 9.275632e-01	k: 27738	n:30000
CRP   30000 perm   6 sec   (5065 perm/sec)   p_kst 9.246000e-01   p_cons 7.070000e-02   p_joint 2.262333e-01

Outputting figure to mutsig2_images.part000000000043/CRP.4_683_30000_0.9246_0.0707_0.22623.png
                gene_name: CRP
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.071 
      ci_cons_bounds_left: 0.068 
     ci_cons_bounds_right: 0.074 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 31 percent done.
CRTAC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.170998e-02	ci left: 2.785431e-01	ci right 2.963808e-01	k: 2874	n:10000
Cons ci ratio: 4.373470e-02	ci left: 4.356259e-01	ci right 4.552059e-01	k: 4454	n:10000
KS ci ratio: 9.032022e-02	ci left: 1.512941e-01	ci right 1.657054e-01	k: 1584	n:10000
CRTAC1   10000 perm   2 sec   (5276 perm/sec)   p_kst 1.584000e-01   p_cons 4.454000e-01   p_joint 2.874000e-01

Outputting figure to mutsig2_images.part000000000043/CRTAC1.4_2046_10000_0.1584_0.4454_0.2874.png
                gene_name: CRTAC1
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 33 percent done.
CRYBG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.185675e-02	ci left: 5.925284e-01	ci right 6.118120e-01	k: 6022	n:10000
Cons ci ratio: 7.254263e-02	ci left: 2.177347e-01	ci right 2.342252e-01	k: 2259	n:10000
KS ci ratio: 1.188309e-02	ci left: 9.102884e-01	ci right 9.212679e-01	k: 9159	n:10000
CRYBG3   10000 perm   2 sec   (4968 perm/sec)   p_kst 9.159000e-01   p_cons 2.259000e-01   p_joint 6.022000e-01

Outputting figure to mutsig2_images.part000000000043/CRYBG3.4_3145_10000_0.9159_0.2259_0.6022.png
                gene_name: CRYBG3
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 36 percent done.
CRB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.148685e-02	ci left: 4.617755e-01	ci right 4.814411e-01	k: 4716	n:10000
KS ci ratio: 1.362938e-02	ci left: 8.859570e-01	ci right 8.982135e-01	k: 8922	n:10000
CRB2   10000 perm   2 sec   (4096 perm/sec)   p_kst 8.922000e-01   p_cons 4.716000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000043/CRB2.3_3910_10000_0.8922_0.4716_1.png
                gene_name: CRB2
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 38 percent done.
CREB5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.879412e-02	ci left: 6.400560e-01	ci right 6.588569e-01	k: 6495	n:10000
Cons ci ratio: 5.589344e-02	ci left: 3.203876e-01	ci right 3.389118e-01	k: 3296	n:10000
KS ci ratio: 3.900648e-02	ci left: 4.925508e-01	ci right 5.122478e-01	k: 5024	n:10000
CREB5   10000 perm   2 sec   (5728 perm/sec)   p_kst 5.024000e-01   p_cons 3.296000e-01   p_joint 6.495000e-01

Outputting figure to mutsig2_images.part000000000043/CREB5.3_1622_10000_0.5024_0.3296_0.6495.png
                gene_name: CREB5
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 40 percent done.
CRHR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.155349e-02	ci left: 4.609766e-01	ci right 4.806404e-01	k: 4708	n:10000
Cons ci ratio: 1.035678e-01	ci left: 1.187734e-01	ci right 1.318457e-01	k: 1252	n:10000
KS ci ratio: 1.284443e-02	ci left: 8.971340e-01	ci right 9.088300e-01	k: 9031	n:10000
CRHR1   10000 perm   2 sec   (6163 perm/sec)   p_kst 9.031000e-01   p_cons 1.252000e-01   p_joint 4.708000e-01

Joint ci ratio: 2.144908e-02	ci left: 6.186993e-01	ci right 6.321642e-01	k: 12509	n:20000
Cons ci ratio: 7.368931e-02	ci left: 1.193638e-01	ci right 1.285458e-01	k: 2478	n:20000
KS ci ratio: 9.023817e-03	ci left: 9.000371e-01	ci right 9.082450e-01	k: 18084	n:20000
CRHR1   20000 perm   4 sec   (5349 perm/sec)   p_kst 9.042000e-01   p_cons 1.239000e-01   p_joint 6.254500e-01

Outputting figure to mutsig2_images.part000000000043/CRHR1.3_1391_20000_0.9042_0.1239_0.62545.png
                gene_name: CRHR1
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.63 

Current progress: 43 percent done.
CRHR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.025482e-01	ci left: 3.243447e-02	ci right 3.983893e-02	k: 360	n:10000
Cons ci ratio: 1.531252e-01	ci left: 5.677313e-02	ci right 6.628428e-02	k: 614	n:10000
KS ci ratio: 1.730584e-01	ci left: 4.456333e-02	ci right 5.310195e-02	k: 487	n:10000
CRHR2   10000 perm   2 sec   (6160 perm/sec)   p_kst 4.870000e-02   p_cons 6.140000e-02   p_joint 3.600000e-02

Joint ci ratio: 1.820756e-01	ci left: 2.058483e-02	ci right 2.475554e-02	k: 452	n:20000
Cons ci ratio: 1.066702e-01	ci left: 5.986647e-02	ci right 6.666118e-02	k: 1264	n:20000
KS ci ratio: 1.259415e-01	ci left: 4.328340e-02	ci right 4.914944e-02	k: 923	n:20000
CRHR2   20000 perm   4 sec   (5359 perm/sec)   p_kst 4.615000e-02   p_cons 6.320000e-02   p_joint 2.260000e-02

Joint ci ratio: 1.312683e-01	ci left: 2.696883e-02	ci right 3.078980e-02	k: 865	n:30000
Cons ci ratio: 8.947354e-02	ci left: 5.743657e-02	ci right 6.284900e-02	k: 1803	n:30000
KS ci ratio: 9.799811e-02	ci left: 4.814675e-02	ci right 5.314073e-02	k: 1518	n:30000
CRHR2   30000 perm   6 sec   (5001 perm/sec)   p_kst 5.060000e-02   p_cons 6.010000e-02   p_joint 2.883333e-02

Joint ci ratio: 9.252026e-02	ci left: 4.095944e-02	ci right 4.495726e-02	k: 1717	n:40000
Cons ci ratio: 7.716854e-02	ci left: 5.825672e-02	ci right 6.295731e-02	k: 2423	n:40000
KS ci ratio: 8.450356e-02	ci left: 4.888872e-02	ci right 5.322675e-02	k: 2041	n:40000
CRHR2   40000 perm   8 sec   (4788 perm/sec)   p_kst 5.102500e-02   p_cons 6.057500e-02   p_joint 4.292500e-02

Outputting figure to mutsig2_images.part000000000043/CRHR2.3_1284_40000_0.051025_0.060575_0.042925.png
                gene_name: CRHR2
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.051 
        ci_ks_bounds_left: 0.049 
       ci_ks_bounds_right: 0.053 
                   p_cons: 0.061 
      ci_cons_bounds_left: 0.058 
     ci_cons_bounds_right: 0.063 
                  p_joint: 0.043 
     ci_joint_bounds_left: 0.041 
    ci_joint_bounds_right: 0.045 

Current progress: 45 percent done.
CRLF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.525351e-02	ci left: 4.188726e-01	ci right 4.383690e-01	k: 4286	n:10000
Cons ci ratio: 1.030513e-01	ci left: 1.198488e-01	ci right 1.329697e-01	k: 1263	n:10000
KS ci ratio: 4.696672e-02	ci left: 4.008357e-01	ci right 4.202165e-01	k: 4105	n:10000
CRLF3   10000 perm   2 sec   (6078 perm/sec)   p_kst 4.105000e-01   p_cons 1.263000e-01   p_joint 4.286000e-01

Joint ci ratio: 2.399760e-02	ci left: 5.646568e-01	ci right 5.784224e-01	k: 11431	n:20000
Cons ci ratio: 7.493679e-02	ci left: 1.158219e-01	ci right 1.248888e-01	k: 2406	n:20000
KS ci ratio: 3.309380e-02	ci left: 4.054162e-01	ci right 4.191093e-01	k: 8245	n:20000
CRLF3   20000 perm   4 sec   (5269 perm/sec)   p_kst 4.122500e-01   p_cons 1.203000e-01   p_joint 5.715500e-01

Outputting figure to mutsig2_images.part000000000043/CRLF3.3_1361_20000_0.41225_0.1203_0.57155.png
                gene_name: CRLF3
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 48 percent done.
CRNN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.702838e-02	ci left: 1.977156e-01	ci right 2.136562e-01	k: 2056	n:10000
Cons ci ratio: 4.215870e-02	ci left: 4.537880e-01	ci right 4.734332e-01	k: 4636	n:10000
KS ci ratio: 1.242641e-01	ci left: 8.484960e-02	ci right 9.619025e-02	k: 904	n:10000
CRNN   10000 perm   2 sec   (5803 perm/sec)   p_kst 9.040000e-02   p_cons 4.636000e-01   p_joint 2.056000e-01

Joint ci ratio: 6.386703e-02	ci left: 1.534141e-01	ci right 1.635854e-01	k: 3169	n:20000
Cons ci ratio: 2.981016e-02	ci left: 4.567195e-01	ci right 4.705910e-01	k: 9273	n:20000
KS ci ratio: 8.811083e-02	ci left: 8.606860e-02	ci right 9.405105e-02	k: 1800	n:20000
CRNN   20000 perm   4 sec   (5033 perm/sec)   p_kst 9.000000e-02   p_cons 4.636500e-01   p_joint 1.584500e-01

Outputting figure to mutsig2_images.part000000000043/CRNN.3_1496_20000_0.09_0.46365_0.15845.png
                gene_name: CRNN
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.090 
        ci_ks_bounds_left: 0.086 
       ci_ks_bounds_right: 0.094 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 50 percent done.
CRTAM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.958005e-02	ci left: 4.852533e-01	ci right 5.049496e-01	k: 4951	n:10000
Cons ci ratio: 8.827696e-02	ci left: 1.573805e-01	ci right 1.720154e-01	k: 1646	n:10000
KS ci ratio: 2.827749e-02	ci left: 6.483055e-01	ci right 6.670026e-01	k: 6577	n:10000
CRTAM   10000 perm   2 sec   (6115 perm/sec)   p_kst 6.577000e-01   p_cons 1.646000e-01   p_joint 4.951000e-01

Outputting figure to mutsig2_images.part000000000043/CRTAM.3_1222_10000_0.6577_0.1646_0.4951.png
                gene_name: CRTAM
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.50 

Current progress: 52 percent done.
CRX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.815829e-02	ci left: 6.502174e-01	ci right 6.688896e-01	k: 6596	n:10000
KS ci ratio: 2.854166e-02	ci left: 6.440798e-01	ci right 6.628308e-01	k: 6535	n:10000
CRX   10000 perm   2 sec   (6321 perm/sec)   p_kst 6.535000e-01   p_cons 6.596000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000043/CRX.3_912_10000_0.6535_0.6596_1.png
                gene_name: CRX
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 55 percent done.
CRYGA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.252672e-02	ci left: 9.015493e-01	ci right 9.130121e-01	k: 9074	n:10000
Cons ci ratio: 2.252919e-02	ci left: 7.431099e-01	ci right 7.601433e-01	k: 7517	n:10000
KS ci ratio: 2.444450e-02	ci left: 7.110866e-01	ci right 7.287851e-01	k: 7200	n:10000
CRYGA   10000 perm   1 sec   (7223 perm/sec)   p_kst 7.200000e-01   p_cons 7.517000e-01   p_joint 9.074000e-01

Outputting figure to mutsig2_images.part000000000043/CRYGA.3_537_10000_0.72_0.7517_0.9074.png
                gene_name: CRYGA
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 57 percent done.
CRYL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.722952e-02	ci left: 6.652165e-01	ci right 6.836817e-01	k: 6745	n:10000
Cons ci ratio: 4.089238e-02	ci left: 4.689664e-01	ci right 4.886460e-01	k: 4788	n:10000
KS ci ratio: 1.589720e-02	ci left: 8.518204e-01	ci right 8.655699e-01	k: 8588	n:10000
CRYL1   10000 perm   2 sec   (5774 perm/sec)   p_kst 8.588000e-01   p_cons 4.788000e-01   p_joint 6.745000e-01

Outputting figure to mutsig2_images.part000000000043/CRYL1.3_992_10000_0.8588_0.4788_0.6745.png
                gene_name: CRYL1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.68 

Current progress: 60 percent done.
CRYZ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.145358e-02	ci left: 4.621749e-01	ci right 4.818414e-01	k: 4720	n:10000
Cons ci ratio: 4.113893e-02	ci left: 4.659699e-01	ci right 4.856442e-01	k: 4758	n:10000
KS ci ratio: 5.645451e-02	ci left: 3.160206e-01	ci right 3.344813e-01	k: 3252	n:10000
CRYZ   10000 perm   2 sec   (6016 perm/sec)   p_kst 3.252000e-01   p_cons 4.758000e-01   p_joint 4.720000e-01

Outputting figure to mutsig2_images.part000000000043/CRYZ.3_1022_10000_0.3252_0.4758_0.472.png
                gene_name: CRYZ
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 62 percent done.
CSF1R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.585597e-02	ci left: 5.345771e-01	ci right 5.541970e-01	k: 5444	n:10000
KS ci ratio: 1.656605e-02	ci left: 8.413215e-01	ci right 8.554749e-01	k: 8485	n:10000
CSF1R   10000 perm   2 sec   (5512 perm/sec)   p_kst 8.485000e-01   p_cons 5.444000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000043/CSF1R.3_3003_10000_0.8485_0.5444_1.png
                gene_name: CSF1R
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 64 percent done.
CRABP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.302694e-02	ci left: 8.945686e-01	ci right 9.063969e-01	k: 9006	n:10000
KS ci ratio: 1.561441e-02	ci left: 8.562070e-01	ci right 8.697808e-01	k: 8631	n:10000
CRABP2   10000 perm   1 sec   (6833 perm/sec)   p_kst 8.631000e-01   p_cons 9.006000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000043/CRABP2.2_433_10000_0.8631_0.9006_1.png
                gene_name: CRABP2
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
CRCP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.407262e-02	ci left: 4.318355e-01	ci right 4.513986e-01	k: 4416	n:10000
KS ci ratio: 4.373470e-02	ci left: 4.356259e-01	ci right 4.552059e-01	k: 4454	n:10000
CRCP   10000 perm   1 sec   (6766 perm/sec)   p_kst 4.454000e-01   p_cons 4.416000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000043/CRCP.2_561_10000_0.4454_0.4416_1.png
                gene_name: CRCP
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 69 percent done.
CREB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.076971e-02	ci left: 4.704647e-01	ci right 4.901468e-01	k: 4803	n:10000
Cons ci ratio: 5.483237e-03	ci left: 9.780229e-01	ci right 9.834920e-01	k: 9809	n:10000
KS ci ratio: 4.905673e-02	ci left: 3.800254e-01	ci right 3.992390e-01	k: 3896	n:10000
CREB3   10000 perm   2 sec   (6378 perm/sec)   p_kst 3.896000e-01   p_cons 9.809000e-01   p_joint 4.803000e-01

Outputting figure to mutsig2_images.part000000000043/CREB3.2_1152_10000_0.3896_0.9809_0.4803.png
                gene_name: CREB3
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 71 percent done.
CREB3L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.166900e-01	ci left: 9.545302e-02	ci right 1.073803e-01	k: 1013	n:10000
Cons ci ratio: 1.680497e-01	ci left: 4.724933e-02	ci right 5.601420e-02	k: 515	n:10000
KS ci ratio: 5.542886e-02	ci left: 3.240605e-01	ci right 3.426367e-01	k: 3333	n:10000
CREB3L2   10000 perm   2 sec   (6130 perm/sec)   p_kst 3.333000e-01   p_cons 5.150000e-02   p_joint 1.013000e-01

Joint ci ratio: 6.016202e-02	ci left: 1.698059e-01	ci right 1.803887e-01	k: 3501	n:20000
Cons ci ratio: 1.183488e-01	ci left: 4.891463e-02	ci right 5.511643e-02	k: 1039	n:20000
KS ci ratio: 3.912808e-02	ci left: 3.275625e-01	ci right 3.406857e-01	k: 6682	n:20000
CREB3L2   20000 perm   4 sec   (5347 perm/sec)   p_kst 3.341000e-01   p_cons 5.195000e-02   p_joint 1.750500e-01

Joint ci ratio: 7.119933e-02	ci left: 8.849000e-02	ci right 9.505597e-02	k: 2752	n:30000
Cons ci ratio: 1.003877e-01	ci left: 4.593359e-02	ci right 5.082101e-02	k: 1450	n:30000
KS ci ratio: 3.187509e-02	ci left: 3.297913e-01	ci right 3.405073e-01	k: 10054	n:30000
CREB3L2   30000 perm   6 sec   (5056 perm/sec)   p_kst 3.351333e-01   p_cons 4.833333e-02   p_joint 9.173333e-02

Joint ci ratio: 6.035398e-02	ci left: 9.251342e-02	ci right 9.829547e-02	k: 3815	n:40000
Cons ci ratio: 8.712020e-02	ci left: 4.607239e-02	ci right 5.029351e-02	k: 1926	n:40000
KS ci ratio: 2.755156e-02	ci left: 3.313707e-01	ci right 3.406531e-01	k: 13440	n:40000
CREB3L2   40000 perm   8 sec   (4864 perm/sec)   p_kst 3.360000e-01   p_cons 4.815000e-02   p_joint 9.537500e-02

Outputting figure to mutsig2_images.part000000000043/CREB3L2.2_1611_40000_0.336_0.04815_0.095375.png
                gene_name: CREB3L2
               theta_stop: 0.087 
                    nperm: 40000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.048 
      ci_cons_bounds_left: 0.046 
     ci_cons_bounds_right: 0.050 
                  p_joint: 0.095 
     ci_joint_bounds_left: 0.093 
    ci_joint_bounds_right: 0.098 

Current progress: 74 percent done.
CREB3L4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.688161e-02	ci left: 3.127459e-01	ci right 3.311579e-01	k: 3219	n:10000
Cons ci ratio: 4.883062e-02	ci left: 3.822151e-01	ci right 4.014480e-01	k: 3918	n:10000
KS ci ratio: 8.925190e-02	ci left: 1.544350e-01	ci right 1.689626e-01	k: 1616	n:10000
CREB3L4   10000 perm   2 sec   (6347 perm/sec)   p_kst 1.616000e-01   p_cons 3.918000e-01   p_joint 3.219000e-01

Outputting figure to mutsig2_images.part000000000043/CREB3L4.2_1224_10000_0.1616_0.3918_0.3219.png
                gene_name: CREB3L4
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 76 percent done.
CRELD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.611379e-02	ci left: 4.097030e-01	ci right 4.291440e-01	k: 4194	n:10000
Cons ci ratio: 4.900521e-02	ci left: 3.805230e-01	ci right 3.997410e-01	k: 3901	n:10000
KS ci ratio: 7.997575e-02	ci left: 1.858959e-01	ci right 2.014830e-01	k: 1936	n:10000
CRELD2   10000 perm   2 sec   (6351 perm/sec)   p_kst 1.936000e-01   p_cons 3.901000e-01   p_joint 4.194000e-01

Outputting figure to mutsig2_images.part000000000043/CRELD2.2_1253_10000_0.1936_0.3901_0.4194.png
                gene_name: CRELD2
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 79 percent done.
CREM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.926339e-02	ci left: 7.976037e-01	ci right 8.132180e-01	k: 8055	n:10000
KS ci ratio: 5.999634e-03	ci left: 9.740817e-01	ci right 9.800359e-01	k: 9772	n:10000
CREM   10000 perm   2 sec   (6296 perm/sec)   p_kst 9.772000e-01   p_cons 8.055000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000043/CREM.2_1332_10000_0.9772_0.8055_1.png
                gene_name: CREM
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
CRIM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.870215e-02	ci left: 2.992559e-01	ci right 3.174558e-01	k: 3083	n:10000
Cons ci ratio: 8.988259e-02	ci left: 1.525700e-01	ci right 1.670288e-01	k: 1597	n:10000
KS ci ratio: 3.047793e-02	ci left: 6.136175e-01	ci right 6.327106e-01	k: 6232	n:10000
CRIM1   10000 perm   2 sec   (5252 perm/sec)   p_kst 6.232000e-01   p_cons 1.597000e-01   p_joint 3.083000e-01

Outputting figure to mutsig2_images.part000000000043/CRIM1.2_3179_10000_0.6232_0.1597_0.3083.png
                gene_name: CRIM1
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 83 percent done.
CRTC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.644065e-03	ci left: 9.382754e-01	ci right 9.474645e-01	k: 9430	n:10000
Cons ci ratio: 1.469016e-02	ci left: 8.703006e-01	ci right 8.832791e-01	k: 8769	n:10000
KS ci ratio: 2.366395e-02	ci left: 7.241112e-01	ci right 7.415529e-01	k: 7329	n:10000
CRTC3   10000 perm   2 sec   (5936 perm/sec)   p_kst 7.329000e-01   p_cons 8.769000e-01   p_joint 9.430000e-01

Outputting figure to mutsig2_images.part000000000043/CRTC3.2_1920_10000_0.7329_0.8769_0.943.png
                gene_name: CRTC3
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 86 percent done.
CRY1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.137052e-02	ci left: 4.631735e-01	ci right 4.828422e-01	k: 4730	n:10000
KS ci ratio: 1.479875e-02	ci left: 8.686652e-01	ci right 8.817153e-01	k: 8753	n:10000
CRY1   10000 perm   2 sec   (5972 perm/sec)   p_kst 8.753000e-01   p_cons 4.730000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000043/CRY1.2_1809_10000_0.8753_0.473_1.png
                gene_name: CRY1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
CRY2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.554632e-02	ci left: 5.388838e-01	ci right 5.584878e-01	k: 5487	n:10000
KS ci ratio: 4.863654e-02	ci left: 3.841063e-01	ci right 4.033556e-01	k: 3937	n:10000
CRY2   10000 perm   2 sec   (5951 perm/sec)   p_kst 3.937000e-01   p_cons 5.487000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000043/CRY2.2_1925_10000_0.3937_0.5487_1.png
                gene_name: CRY2
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
CRYM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.081274e-02	ci left: 7.718513e-01	ci right 7.881853e-01	k: 7801	n:10000
Cons ci ratio: 8.683729e-03	ci left: 9.489806e-01	ci right 9.573529e-01	k: 9533	n:10000
KS ci ratio: 8.726408e-02	ci left: 1.605234e-01	ci right 1.752706e-01	k: 1678	n:10000
CRYM   10000 perm   2 sec   (6536 perm/sec)   p_kst 1.678000e-01   p_cons 9.533000e-01   p_joint 7.801000e-01

Outputting figure to mutsig2_images.part000000000043/CRYM.2_977_10000_0.1678_0.9533_0.7801.png
                gene_name: CRYM
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 93 percent done.
CSAD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.412510e-02	ci left: 1.407993e-01	ci right 1.548065e-01	k: 1477	n:10000
Cons ci ratio: 2.063072e-02	ci left: 7.748905e-01	ci right 7.911443e-01	k: 7831	n:10000
KS ci ratio: 1.118413e-01	ci left: 1.032490e-01	ci right 1.155795e-01	k: 1093	n:10000
CSAD   10000 perm   2 sec   (6178 perm/sec)   p_kst 1.093000e-01   p_cons 7.831000e-01   p_joint 1.477000e-01

Joint ci ratio: 4.808653e-02	ci left: 2.433658e-01	ci right 2.554071e-01	k: 4987	n:20000
Cons ci ratio: 1.466097e-02	ci left: 7.756064e-01	ci right 7.871117e-01	k: 15628	n:20000
KS ci ratio: 8.144539e-02	ci left: 9.955670e-02	ci right 1.080589e-01	k: 2075	n:20000
CSAD   20000 perm   4 sec   (5295 perm/sec)   p_kst 1.037500e-01   p_cons 7.814000e-01   p_joint 2.493500e-01

Outputting figure to mutsig2_images.part000000000043/CSAD.2_1627_20000_0.10375_0.7814_0.24935.png
                gene_name: CSAD
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.100 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 95 percent done.
CSDE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.430567e-02	ci left: 4.292423e-01	ci right 4.487932e-01	k: 4390	n:10000
KS ci ratio: 5.384612e-02	ci left: 3.369706e-01	ci right 3.557190e-01	k: 3463	n:10000
CSDE1   10000 perm   2 sec   (5591 perm/sec)   p_kst 3.463000e-01   p_cons 4.390000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000043/CSDE1.2_2611_10000_0.3463_0.439_1.png
                gene_name: CSDE1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
CSF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.367929e-02	ci left: 1.419757e-01	ci right 1.560294e-01	k: 1489	n:10000
Cons ci ratio: 8.205735e-03	ci left: 9.539874e-01	ci right 9.619430e-01	k: 9581	n:10000
KS ci ratio: 3.683071e-01	ci left: 9.139894e-03	ci right 1.335208e-02	k: 111	n:10000
CSF1   10000 perm   2 sec   (6189 perm/sec)   p_kst 1.110000e-02   p_cons 9.581000e-01   p_joint 1.489000e-01

Joint ci ratio: 6.884178e-02	ci left: 1.346767e-01	ci right 1.443284e-01	k: 2789	n:20000
Cons ci ratio: 5.770542e-03	ci left: 9.556435e-01	ci right 9.612223e-01	k: 19170	n:20000
KS ci ratio: 2.616225e-01	ci left: 9.647644e-03	ci right 1.259707e-02	k: 221	n:20000
CSF1   20000 perm   4 sec   (5425 perm/sec)   p_kst 1.105000e-02   p_cons 9.585000e-01   p_joint 1.394500e-01

Joint ci ratio: 3.439084e-02	ci left: 2.969731e-01	ci right 3.073985e-01	k: 9065	n:30000
Cons ci ratio: 4.756024e-03	ci left: 9.553952e-01	ci right 9.599823e-01	k: 28732	n:30000
KS ci ratio: 2.162579e-01	ci left: 9.661284e-03	ci right 1.203487e-02	k: 324	n:30000
CSF1   30000 perm   6 sec   (5127 perm/sec)   p_kst 1.080000e-02   p_cons 9.577333e-01   p_joint 3.021667e-01

Joint ci ratio: 4.144783e-02	ci left: 1.789486e-01	ci right 1.865475e-01	k: 7309	n:40000
Cons ci ratio: 4.102375e-03	ci left: 9.560394e-01	ci right 9.599938e-01	k: 38322	n:40000
KS ci ratio: 1.891328e-01	ci left: 9.619560e-03	ci right 1.165242e-02	k: 424	n:40000
CSF1   40000 perm   8 sec   (4963 perm/sec)   p_kst 1.060000e-02   p_cons 9.580500e-01   p_joint 1.827250e-01

Joint ci ratio: 3.775769e-02	ci left: 1.739810e-01	ci right 1.806965e-01	k: 8866	n:50000
Cons ci ratio: 3.973136e-03	ci left: 9.492344e-01	ci right 9.530330e-01	k: 47558	n:50000
KS ci ratio: 1.680899e-01	ci left: 9.855008e-03	ci right 1.168246e-02	k: 537	n:50000
CSF1   50000 perm   10 sec   (4812 perm/sec)   p_kst 1.074000e-02   p_cons 9.511600e-01   p_joint 1.773200e-01

Joint ci ratio: 2.759342e-02	ci left: 2.482146e-01	ci right 2.551761e-01	k: 15101	n:60000
Cons ci ratio: 3.610310e-03	ci left: 9.498355e-01	ci right 9.532873e-01	k: 57095	n:60000
KS ci ratio: 1.520929e-01	ci left: 1.011665e-02	ci right 1.179782e-02	k: 656	n:60000
CSF1   60000 perm   13 sec   (4688 perm/sec)   p_kst 1.093333e-02   p_cons 9.515833e-01   p_joint 2.516833e-01

Joint ci ratio: 3.456547e-02	ci left: 1.525248e-01	ci right 1.579038e-01	k: 10864	n:70000
Cons ci ratio: 3.339754e-03	ci left: 9.500422e-01	ci right 9.532345e-01	k: 66616	n:70000
KS ci ratio: 1.429474e-01	ci left: 9.868332e-03	ci right 1.140121e-02	k: 743	n:70000
CSF1   70000 perm   15 sec   (4580 perm/sec)   p_kst 1.061429e-02   p_cons 9.516571e-01   p_joint 1.552000e-01

Joint ci ratio: 2.267652e-02	ci left: 2.688562e-01	ci right 2.750353e-01	k: 21755	n:80000
Cons ci ratio: 2.855984e-03	ci left: 9.578824e-01	ci right 9.606342e-01	k: 76742	n:80000
KS ci ratio: 1.326382e-01	ci left: 1.008321e-02	ci right 1.152760e-02	k: 863	n:80000
CSF1   80000 perm   18 sec   (4478 perm/sec)   p_kst 1.078750e-02   p_cons 9.592750e-01   p_joint 2.719375e-01

Joint ci ratio: 1.924600e-02	ci left: 3.124643e-01	ci right 3.185475e-01	k: 28395	n:90000
Cons ci ratio: 2.682160e-03	ci left: 9.582706e-01	ci right 9.608552e-01	k: 86362	n:90000
KS ci ratio: 1.251177e-01	ci left: 1.011344e-02	ci right 1.147392e-02	k: 970	n:90000
CSF1   90000 perm   21 sec   (4386 perm/sec)   p_kst 1.077778e-02   p_cons 9.595778e-01   p_joint 3.155000e-01

Joint ci ratio: 1.324985e-02	ci left: 4.636439e-01	ci right 4.698380e-01	k: 46674	n:100000
Cons ci ratio: 2.557834e-03	ci left: 9.579251e-01	ci right 9.603882e-01	k: 95917	n:100000
KS ci ratio: 1.184139e-01	ci left: 1.019772e-02	ci right 1.149089e-02	k: 1083	n:100000
CSF1   100000 perm   23 sec   (4300 perm/sec)   p_kst 1.083000e-02   p_cons 9.591700e-01   p_joint 4.667400e-01

Joint ci ratio: 1.243848e-02	ci left: 4.715271e-01	ci right 4.774379e-01	k: 52193	n:110000
Cons ci ratio: 2.434160e-03	ci left: 9.581340e-01	ci right 9.604780e-01	k: 105525	n:110000
KS ci ratio: 1.132591e-01	ci left: 1.016222e-02	ci right 1.139105e-02	k: 1184	n:110000
CSF1   110000 perm   26 sec   (4215 perm/sec)   p_kst 1.076364e-02   p_cons 9.593182e-01   p_joint 4.744818e-01

Joint ci ratio: 1.168070e-02	ci left: 4.813104e-01	ci right 4.869737e-01	k: 58097	n:120000
Cons ci ratio: 2.328567e-03	ci left: 9.582511e-01	ci right 9.604933e-01	k: 115126	n:120000
KS ci ratio: 1.083834e-01	ci left: 1.019854e-02	ci right 1.137528e-02	k: 1293	n:120000
CSF1   120000 perm   29 sec   (4137 perm/sec)   p_kst 1.077500e-02   p_cons 9.593833e-01   p_joint 4.841417e-01

Joint ci ratio: 1.083926e-02	ci left: 4.987859e-01	ci right 5.042294e-01	k: 65196	n:130000
Cons ci ratio: 2.235617e-03	ci left: 9.583520e-01	ci right 9.605044e-01	k: 124727	n:130000
KS ci ratio: 1.042380e-01	ci left: 1.020026e-02	ci right 1.132942e-02	k: 1398	n:130000
CSF1   130000 perm   32 sec   (4062 perm/sec)   p_kst 1.075385e-02   p_cons 9.594385e-01   p_joint 5.015077e-01

Joint ci ratio: 9.996472e-03	ci left: 5.208154e-01	ci right 5.260550e-01	k: 73281	n:140000
Cons ci ratio: 2.156729e-03	ci left: 9.583024e-01	ci right 9.603785e-01	k: 134309	n:140000
KS ci ratio: 1.000981e-01	ci left: 1.029302e-02	ci right 1.138453e-02	k: 1516	n:140000
CSF1   140000 perm   35 sec   (3992 perm/sec)   p_kst 1.082857e-02   p_cons 9.593500e-01   p_joint 5.234357e-01

Joint ci ratio: 9.809636e-03	ci left: 5.131007e-01	ci right 5.181654e-01	k: 77345	n:150000
Cons ci ratio: 2.084034e-03	ci left: 9.583215e-01	ci right 9.603273e-01	k: 143900	n:150000
KS ci ratio: 9.680513e-02	ci left: 1.028958e-02	ci right 1.134279e-02	k: 1621	n:150000
CSF1   150000 perm   38 sec   (3919 perm/sec)   p_kst 1.080667e-02   p_cons 9.593333e-01   p_joint 5.156333e-01

Outputting figure to mutsig2_images.part000000000043/CSF1.2_1697_150000_0.010807_0.95933_0.51563.png
                gene_name: CSF1
               theta_stop: 0.097 
                    nperm: 150000 
                     p_ks: 0.011 
        ci_ks_bounds_left: 0.010 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.52 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000043
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 43 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1549>
Subject: Job 8003985: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1549>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000044> was used as the working directory.
Started at Sun Nov 11 15:05:00 2012
Results reported at Sun Nov 11 19:12:11 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000044.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000044.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 44  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000044.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  16075.87 sec.
    Max Memory :      4834 MB
    Max Swap   :      7135 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
44
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 44
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 44: processing genes 3891 - 3981
Calculating significance of each gene.
Using projection method.
3891	CSF2	1
3892	CSF2RA	2.970044e-03
3893	CSF2RB	9.546227e-01
3894	CSF3	1
3895	CSF3R	3.124109e-01
3896	CSGALNACT1	1
3897	CSGALNACT2	4.054504e-01
3898	CSH1	1
3899	CSH2	6.099491e-02
3900	CSHL1	2.496719e-01
3901	CSK	1
3902	CSMD1	1
3903	CSMD2	7.420353e-01
3904	CSMD3	1
3905	CSN1S1	1
3906	CSN2	6.165082e-01
3907	CSN3	1
3908	CSNK1A1	2.463188e-01
3909	CSNK1A1L	1.289193e-02
3910	CSNK1D	3.604317e-01
3911	CSNK1E	1
3912	CSNK1G1	5.294778e-01
3913	CSNK1G2	5.793846e-01
3914	CSNK1G3	1
3915	CSNK2A1	2.327375e-01
3916	CSNK2A2	1
3917	CSNK2B	1
3918	CSPG4	1
3919	CSPG5	1
3920	CSPP1	6.114926e-01
3921	CSRNP1	3.101423e-01
3922	CSRNP2	1
3923	CSRNP3	6.059956e-02
3924	CSRP1	3.740039e-01
3925	CSRP2	1
3926	CSRP2BP	8.826945e-01
3927	CSRP3	2.111251e-01
3928	CST1	1
3929	CST11	2.534872e-02
3930	CST2	1
3931	CST3	1
3932	CST4	3.207453e-01
3933	CST5	1.512961e-01
3934	CST6	3.079979e-01
3935	CST7	2.963268e-01
3936	CST8	2.960100e-01
3937	CST9	1
3938	CST9L	4.305904e-01
3939	CSTA	1
3940	CSTB	1
3941	CSTF1	1
3942	CSTF2	5.397837e-01
3943	CSTF2T	5.242258e-01
3944	CSTF3	9.670092e-01
3945	CSTL1	1.920150e-01
3946	CT45A5	1
3947	CT47B1	1
3948	CT62	1.324731e-01
3949	CTAG2	3.802331e-01
3950	CTAGE1	1
3951	CTAGE5	7.250973e-01
3952	CTAGE6P	1
3953	CTAGE9	1
3954	CTBP1	3.904601e-01
3955	CTBP2	1
3956	CTBS	3.665137e-02
3957	CTCF	1
3958	CTCFL	6.801209e-01
3959	CTDP1	8.852369e-01
3960	CTDSP1	1.803978e-01
3961	CTDSP2	7.176186e-01
3962	CTDSPL	1
3963	CTDSPL2	5.628597e-01
3964	CTGF	7.088967e-01
3965	CTH	1
3966	CTHRC1	3.722216e-01
3967	CTLA4	5.383440e-01
3968	CTNNA1	1
3969	CTNNA2	1
3970	CTNNA3	9.294707e-01
3971	CTNNAL1	1
3972	CTNNB1	4.308986e-01
3973	CTNNBIP1	1
3974	CTNNBL1	6.260192e-01
3975	CTNND1	9.487197e-01
3976	CTNND2	8.216527e-01
3977	CTNS	7.083116e-01
3978	CTPS	4.838296e-01
3979	CTPS2	5.234549e-01
3980	CTR9	9.254099e-01
3981	CTRC	1
Done

Running MutSig 2:
Scatter job 44: processing genes 3891 - 3981
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CSMD3
Processing conservation and coverage...
87% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.386407e-02	ci left: 1.717274e-01	ci right 1.868599e-01	k: 1792	n:10000
Cons ci ratio: 9.990851e-02	ci left: 1.266956e-01	ci right 1.401187e-01	k: 1333	n:10000
KS ci ratio: 6.228728e-02	ci left: 2.747796e-01	ci right 2.925466e-01	k: 2836	n:10000
CSMD3   10000 perm   10 sec   (1033 perm/sec)   p_kst 2.836000e-01   p_cons 1.333000e-01   p_joint 1.792000e-01

Outputting figure to mutsig2_images.part000000000044/CSMD3.116_11470_10000_0.2836_0.1333_0.1792.png
                gene_name: CSMD3
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.19 

Current progress: 2 percent done.
CSMD1
Processing conservation and coverage...
92% 
Processing mutations... 
Skipping 2 mutations outside exons of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.281715e-02	ci left: 4.461024e-01	ci right 4.657233e-01	k: 4559	n:10000
Cons ci ratio: 5.291978e-02	ci left: 3.448197e-01	ci right 3.636653e-01	k: 3542	n:10000
KS ci ratio: 5.594406e-02	ci left: 3.199905e-01	ci right 3.385090e-01	k: 3292	n:10000
CSMD1   10000 perm   5 sec   (2147 perm/sec)   p_kst 3.292000e-01   p_cons 3.542000e-01   p_joint 4.559000e-01

Outputting figure to mutsig2_images.part000000000044/CSMD1.40_10788_10000_0.3292_0.3542_0.4559.png
                gene_name: CSMD1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 4 percent done.
CSMD2
Processing conservation and coverage...
93% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.651887e-02	ci left: 3.155244e-01	ci right 3.339778e-01	k: 3247	n:10000
Cons ci ratio: 3.162458e-02	ci left: 5.960420e-01	ci right 6.152964e-01	k: 6057	n:10000
KS ci ratio: 6.764274e-02	ci left: 2.428218e-01	ci right 2.599232e-01	k: 2513	n:10000
CSMD2   10000 perm   5 sec   (2166 perm/sec)   p_kst 2.513000e-01   p_cons 6.057000e-01   p_joint 3.247000e-01

Outputting figure to mutsig2_images.part000000000044/CSMD2.34_10740_10000_0.2513_0.6057_0.3247.png
                gene_name: CSMD2
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 6 percent done.
CTNNA2
Processing conservation and coverage...
Processing mutations... 
Skipping 5 mutations outside exons of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.626559e-02	ci left: 4.081086e-01	ci right 4.275393e-01	k: 4178	n:10000
Cons ci ratio: 1.024770e-02	ci left: 9.311281e-01	ci right 9.408160e-01	k: 9361	n:10000
KS ci ratio: 6.740994e-02	ci left: 2.441069e-01	ci right 2.612374e-01	k: 2526	n:10000
CTNNA2   10000 perm   3 sec   (3984 perm/sec)   p_kst 2.526000e-01   p_cons 9.361000e-01   p_joint 4.178000e-01

Outputting figure to mutsig2_images.part000000000044/CTNNA2.22_2578_10000_0.2526_0.9361_0.4178.png
                gene_name: CTNNA2
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 9 percent done.
CTNNA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.696349e-02	ci left: 8.350072e-01	ci right 8.493928e-01	k: 8423	n:10000
KS ci ratio: 3.136044e-02	ci left: 6.000581e-01	ci right 6.192779e-01	k: 6097	n:10000
CTNNA3   10000 perm   2 sec   (4526 perm/sec)   p_kst 6.097000e-01   p_cons 8.423000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000044/CTNNA3.16_2756_10000_0.6097_0.8423_1.png
                gene_name: CTNNA3
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 11 percent done.
CTNND2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.323372e-02	ci left: 4.413126e-01	ci right 4.609159e-01	k: 4511	n:10000
Cons ci ratio: 5.395331e-02	ci left: 3.360765e-01	ci right 3.548136e-01	k: 3454	n:10000
KS ci ratio: 4.334736e-02	ci left: 4.400155e-01	ci right 4.596137e-01	k: 4498	n:10000
CTNND2   10000 perm   3 sec   (3888 perm/sec)   p_kst 4.498000e-01   p_cons 3.454000e-01   p_joint 4.511000e-01

Outputting figure to mutsig2_images.part000000000044/CTNND2.16_3766_10000_0.4498_0.3454_0.4511.png
                gene_name: CTNND2
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 13 percent done.
CSF2RA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.770450e-02	ci left: 8.231021e-01	ci right 8.379049e-01	k: 8306	n:10000
Cons ci ratio: 1.440314e-02	ci left: 8.745949e-01	ci right 8.873822e-01	k: 8811	n:10000
KS ci ratio: 3.434968e-02	ci left: 5.558170e-01	ci right 5.753448e-01	k: 5656	n:10000
CSF2RA   10000 perm   2 sec   (5149 perm/sec)   p_kst 5.656000e-01   p_cons 8.811000e-01   p_joint 8.306000e-01

Outputting figure to mutsig2_images.part000000000044/CSF2RA.7_1575_10000_0.5656_0.8811_0.8306.png
                gene_name: CSF2RA
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 15 percent done.
CSF3R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.567934e-02	ci left: 6.906085e-01	ci right 7.086750e-01	k: 6997	n:10000
Cons ci ratio: 3.170407e-02	ci left: 5.948373e-01	ci right 6.141018e-01	k: 6045	n:10000
KS ci ratio: 3.354587e-02	ci left: 5.674464e-01	ci right 5.869086e-01	k: 5772	n:10000
CSF3R   10000 perm   2 sec   (5023 perm/sec)   p_kst 5.772000e-01   p_cons 6.045000e-01   p_joint 6.997000e-01

Outputting figure to mutsig2_images.part000000000044/CSF3R.7_2761_10000_0.5772_0.6045_0.6997.png
                gene_name: CSF3R
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 17 percent done.
CSRNP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.242904e-01	ci left: 1.206533e-02	ci right 1.682370e-02	k: 143	n:10000
Cons ci ratio: 1.752551e+00	ci left: 1.089969e-04	ci right 1.023839e-03	k: 4	n:10000
KS ci ratio: 1.865137e-01	ci left: 3.834345e-02	ci right 4.632594e-02	k: 422	n:10000
CSRNP3   10000 perm   2 sec   (5721 perm/sec)   p_kst 4.220000e-02   p_cons 4.000000e-04   p_joint 1.430000e-02

Joint ci ratio: 4.012173e-01	ci left: 3.799699e-03	ci right 5.748583e-03	k: 94	n:20000
Cons ci ratio: 1.481324e+00	ci left: 1.101024e-04	ci right 6.528585e-04	k: 6	n:20000
KS ci ratio: 1.327921e-01	ci left: 3.897135e-02	ci right 4.456287e-02	k: 834	n:20000
CSRNP3   20000 perm   4 sec   (5061 perm/sec)   p_kst 4.170000e-02   p_cons 3.000000e-04   p_joint 4.700000e-03

Joint ci ratio: 3.586265e-01	ci left: 3.256774e-03	ci right 4.708553e-03	k: 118	n:30000
Cons ci ratio: 1.481423e+00	ci left: 7.339990e-05	ci right 4.352646e-04	k: 6	n:30000
KS ci ratio: 1.071591e-01	ci left: 4.040740e-02	ci right 4.501502e-02	k: 1280	n:30000
CSRNP3   30000 perm   6 sec   (4809 perm/sec)   p_kst 4.266667e-02   p_cons 2.000000e-04   p_joint 3.933333e-03

Joint ci ratio: 3.216214e-01	ci left: 3.105786e-03	ci right 4.318021e-03	k: 147	n:40000
Cons ci ratio: 1.306503e+00	ci left: 8.634963e-05	ci right 3.940415e-04	k: 8	n:40000
KS ci ratio: 9.229595e-02	ci left: 4.115501e-02	ci right 4.516165e-02	k: 1725	n:40000
CSRNP3   40000 perm   9 sec   (4643 perm/sec)   p_kst 4.312500e-02   p_cons 2.000000e-04   p_joint 3.675000e-03

Joint ci ratio: 3.273345e-01	ci left: 2.392621e-03	ci right 3.346552e-03	k: 142	n:50000
Cons ci ratio: 1.239476e+00	ci left: 8.231066e-05	ci right 3.416684e-04	k: 9	n:50000
KS ci ratio: 8.296498e-02	ci left: 4.096404e-02	ci right 4.452929e-02	k: 2136	n:50000
CSRNP3   50000 perm   11 sec   (4513 perm/sec)   p_kst 4.272000e-02   p_cons 1.800000e-04   p_joint 2.840000e-03

Joint ci ratio: 3.382553e-01	ci left: 1.856288e-03	ci right 2.626461e-03	k: 133	n:60000
Cons ci ratio: 1.181806e+00	ci left: 7.992595e-05	ci right 3.064845e-04	k: 10	n:60000
KS ci ratio: 7.599062e-02	ci left: 4.085062e-02	ci right 4.409383e-02	k: 2547	n:60000
CSRNP3   60000 perm   14 sec   (4407 perm/sec)   p_kst 4.245000e-02   p_cons 1.666667e-04   p_joint 2.216667e-03

Joint ci ratio: 2.035270e-01	ci left: 4.734883e-03	ci right 5.821033e-03	k: 368	n:70000
Cons ci ratio: 1.087104e+00	ci left: 8.858268e-05	ci right 2.994320e-04	k: 12	n:70000
KS ci ratio: 6.892131e-02	ci left: 4.264700e-02	ci right 4.570522e-02	k: 3091	n:70000
CSRNP3   70000 perm   16 sec   (4314 perm/sec)   p_kst 4.415714e-02   p_cons 1.714286e-04   p_joint 5.257143e-03

Joint ci ratio: 2.176725e-01	ci left: 3.598075e-03	ci right 4.488484e-03	k: 322	n:80000
Cons ci ratio: 9.506327e-01	ci left: 1.143215e-04	ci right 3.247672e-04	k: 16	n:80000
KS ci ratio: 6.452463e-02	ci left: 4.267525e-02	ci right 4.553293e-02	k: 3527	n:80000
CSRNP3   80000 perm   19 sec   (4219 perm/sec)   p_kst 4.408750e-02   p_cons 2.000000e-04   p_joint 4.025000e-03

Joint ci ratio: 2.112552e-01	ci left: 3.408541e-03	ci right 4.223954e-03	k: 342	n:90000
Cons ci ratio: 9.238553e-01	ci left: 1.100385e-04	ci right 3.024122e-04	k: 17	n:90000
KS ci ratio: 6.008601e-02	ci left: 4.379714e-02	ci right 4.652117e-02	k: 4063	n:90000
CSRNP3   90000 perm   22 sec   (4137 perm/sec)   p_kst 4.514444e-02   p_cons 1.888889e-04   p_joint 3.800000e-03

Joint ci ratio: 2.633949e-01	ci left: 1.919135e-03	ci right 2.510332e-03	k: 220	n:100000
Cons ci ratio: 8.553200e-01	ci left: 1.221693e-04	ci right 3.088670e-04	k: 20	n:100000
KS ci ratio: 5.710571e-02	ci left: 4.371349e-02	ci right 4.629299e-02	k: 4499	n:100000
CSRNP3   100000 perm   25 sec   (4059 perm/sec)   p_kst 4.499000e-02   p_cons 2.000000e-04   p_joint 2.200000e-03

Joint ci ratio: 2.582056e-01	ci left: 1.821126e-03	ci right 2.369294e-03	k: 229	n:110000
Cons ci ratio: 8.172873e-01	ci left: 1.253430e-04	ci right 3.027868e-04	k: 22	n:110000
KS ci ratio: 5.448853e-02	ci left: 4.371062e-02	ci right 4.616799e-02	k: 4942	n:110000
CSRNP3   110000 perm   28 sec   (3975 perm/sec)   p_kst 4.492727e-02   p_cons 2.000000e-04   p_joint 2.081818e-03

Joint ci ratio: 2.560074e-01	ci left: 1.700536e-03	ci right 2.207351e-03	k: 233	n:120000
Cons ci ratio: 8.000833e-01	ci left: 1.215040e-04	ci right 2.875803e-04	k: 23	n:120000
KS ci ratio: 5.236415e-02	ci left: 4.344715e-02	ci right 4.579159e-02	k: 5353	n:120000
CSRNP3   120000 perm   31 sec   (3903 perm/sec)   p_kst 4.460833e-02   p_cons 1.916667e-04   p_joint 1.941667e-03

Joint ci ratio: 1.526631e-01	ci left: 4.660807e-03	ci right 5.438446e-03	k: 655	n:130000
Cons ci ratio: 7.543231e-01	ci left: 1.306507e-04	ci right 2.930327e-04	k: 26	n:130000
KS ci ratio: 5.050231e-02	ci left: 4.317262e-02	ci right 4.541699e-02	k: 5757	n:130000
CSRNP3   130000 perm   34 sec   (3826 perm/sec)   p_kst 4.428462e-02   p_cons 2.000000e-04   p_joint 5.038462e-03

Joint ci ratio: 1.558242e-01	ci left: 4.149259e-03	ci right 4.857218e-03	k: 629	n:140000
Cons ci ratio: 7.543289e-01	ci left: 1.213182e-04	ci right 2.721027e-04	k: 26	n:140000
KS ci ratio: 4.866494e-02	ci left: 4.321393e-02	ci right 4.537642e-02	k: 6200	n:140000
CSRNP3   140000 perm   37 sec   (3765 perm/sec)   p_kst 4.428571e-02   p_cons 1.857143e-04   p_joint 4.492857e-03

Joint ci ratio: 1.560967e-01	ci left: 3.859783e-03	ci right 4.519608e-03	k: 627	n:150000
Cons ci ratio: 7.156169e-01	ci left: 1.294821e-04	ci right 2.776472e-04	k: 29	n:150000
KS ci ratio: 4.714463e-02	ci left: 4.302032e-02	ci right 4.510402e-02	k: 6608	n:150000
CSRNP3   150000 perm   41 sec   (3700 perm/sec)   p_kst 4.405333e-02   p_cons 1.933333e-04   p_joint 4.180000e-03

Joint ci ratio: 1.604047e-01	ci left: 3.420400e-03	ci right 4.022803e-03	k: 594	n:160000
Cons ci ratio: 6.928932e-01	ci left: 1.316474e-04	ci right 2.750015e-04	k: 31	n:160000
KS ci ratio: 4.562594e-02	ci left: 4.309293e-02	ci right 4.511114e-02	k: 7055	n:160000
CSRNP3   160000 perm   44 sec   (3641 perm/sec)   p_kst 4.409375e-02   p_cons 1.937500e-04   p_joint 3.712500e-03

Joint ci ratio: 1.616539e-01	ci left: 3.168359e-03	ci right 3.731138e-03	k: 585	n:170000
Cons ci ratio: 6.928974e-01	ci left: 1.239032e-04	ci right 2.588255e-04	k: 31	n:170000
KS ci ratio: 4.425440e-02	ci left: 4.314048e-02	ci right 4.509863e-02	k: 7499	n:170000
CSRNP3   170000 perm   47 sec   (3590 perm/sec)   p_kst 4.411176e-02   p_cons 1.823529e-04   p_joint 3.441176e-03

Joint ci ratio: 1.630713e-01	ci left: 2.939012e-03	ci right 3.466078e-03	k: 575	n:180000
Cons ci ratio: 6.722091e-01	ci left: 1.262015e-04	ci right 2.574586e-04	k: 33	n:180000
KS ci ratio: 4.305345e-02	ci left: 4.307909e-02	ci right 4.498007e-02	k: 7924	n:180000
CSRNP3   180000 perm   51 sec   (3540 perm/sec)   p_kst 4.402222e-02   p_cons 1.833333e-04   p_joint 3.194444e-03

Joint ci ratio: 1.701969e-01	ci left: 2.547226e-03	ci right 3.026040e-03	k: 528	n:190000
Cons ci ratio: 6.625382e-01	ci left: 1.239293e-04	ci right 2.500521e-04	k: 34	n:190000
KS ci ratio: 4.193474e-02	ci left: 4.304566e-02	ci right 4.489461e-02	k: 8353	n:190000
CSRNP3   190000 perm   54 sec   (3487 perm/sec)   p_kst 4.396316e-02   p_cons 1.789474e-04   p_joint 2.778947e-03

Joint ci ratio: 1.658639e-01	ci left: 2.553978e-03	ci right 3.020619e-03	k: 556	n:200000
Cons ci ratio: 6.358460e-01	ci left: 1.302603e-04	ci right 2.549892e-04	k: 37	n:200000
KS ci ratio: 4.087702e-02	ci left: 4.306070e-02	ci right 4.486255e-02	k: 8791	n:200000
CSRNP3   200000 perm   58 sec   (3435 perm/sec)   p_kst 4.395500e-02   p_cons 1.850000e-04   p_joint 2.780000e-03

Joint ci ratio: 1.718557e-01	ci left: 2.259023e-03	ci right 2.688228e-03	k: 518	n:210000
Cons ci ratio: 6.358489e-01	ci left: 1.240573e-04	ci right 2.428473e-04	k: 37	n:210000
KS ci ratio: 4.000444e-02	ci left: 4.284846e-02	ci right 4.460226e-02	k: 9181	n:210000
CSRNP3   210000 perm   62 sec   (3385 perm/sec)   p_kst 4.371905e-02   p_cons 1.761905e-04   p_joint 2.466667e-03

Joint ci ratio: 1.681705e-01	ci left: 2.256437e-03	ci right 2.675026e-03	k: 541	n:220000
Cons ci ratio: 6.276453e-01	ci left: 1.222349e-04	ci right 2.370740e-04	k: 38	n:220000
KS ci ratio: 3.911922e-02	ci left: 4.279548e-02	ci right 4.450748e-02	k: 9602	n:220000
CSRNP3   220000 perm   66 sec   (3338 perm/sec)   p_kst 4.364545e-02   p_cons 1.727273e-04   p_joint 2.459091e-03

Joint ci ratio: 1.653002e-01	ci left: 2.237490e-03	ci right 2.644776e-03	k: 560	n:230000
Cons ci ratio: 6.197512e-01	ci left: 1.205801e-04	ci right 2.317940e-04	k: 39	n:230000
KS ci ratio: 3.828228e-02	ci left: 4.276473e-02	ci right 4.443810e-02	k: 10027	n:230000
CSRNP3   230000 perm   70 sec   (3289 perm/sec)   p_kst 4.359565e-02   p_cons 1.695652e-04   p_joint 2.434783e-03

Joint ci ratio: 1.629951e-01	ci left: 2.208187e-03	ci right 2.603983e-03	k: 576	n:240000
Cons ci ratio: 6.048149e-01	ci left: 1.225957e-04	ci right 2.317476e-04	k: 41	n:240000
KS ci ratio: 3.746502e-02	ci left: 4.280711e-02	ci right 4.444560e-02	k: 10469	n:240000
CSRNP3   240000 perm   74 sec   (3243 perm/sec)   p_kst 4.362083e-02   p_cons 1.708333e-04   p_joint 2.400000e-03

Joint ci ratio: 1.603776e-01	ci left: 2.192783e-03	ci right 2.578898e-03	k: 595	n:250000
Cons ci ratio: 5.977418e-01	ci left: 1.210822e-04	ci right 2.270805e-04	k: 42	n:250000
KS ci ratio: 3.669797e-02	ci left: 4.284645e-02	ci right 4.445216e-02	k: 10911	n:250000
CSRNP3   250000 perm   78 sec   (3197 perm/sec)   p_kst 4.364400e-02   p_cons 1.680000e-04   p_joint 2.380000e-03

Joint ci ratio: 1.571159e-01	ci left: 2.200780e-03	ci right 2.579679e-03	k: 620	n:260000
Cons ci ratio: 5.843074e-01	ci left: 1.229659e-04	ci right 2.271778e-04	k: 44	n:260000
KS ci ratio: 3.598611e-02	ci left: 4.286019e-02	ci right 4.443462e-02	k: 11347	n:260000
CSRNP3   260000 perm   82 sec   (3154 perm/sec)   p_kst 4.364231e-02   p_cons 1.692308e-04   p_joint 2.384615e-03

Joint ci ratio: 1.550105e-01	ci left: 2.179772e-03	ci right 2.549558e-03	k: 637	n:270000
Cons ci ratio: 5.843093e-01	ci left: 1.184116e-04	ci right 2.187641e-04	k: 44	n:270000
KS ci ratio: 3.530005e-02	ci left: 4.290625e-02	ci right 4.445171e-02	k: 11792	n:270000
CSRNP3   270000 perm   87 sec   (3112 perm/sec)   p_kst 4.367407e-02   p_cons 1.629630e-04   p_joint 2.359259e-03

Joint ci ratio: 1.536948e-01	ci left: 2.139688e-03	ci right 2.499309e-03	k: 648	n:280000
Cons ci ratio: 5.717418e-01	ci left: 1.202802e-04	ci right 2.191281e-04	k: 46	n:280000
KS ci ratio: 3.466660e-02	ci left: 4.291387e-02	ci right 4.443131e-02	k: 12227	n:280000
CSRNP3   280000 perm   91 sec   (3070 perm/sec)   p_kst 4.366786e-02   p_cons 1.642857e-04   p_joint 2.314286e-03

Joint ci ratio: 1.539388e-01	ci left: 2.059268e-03	ci right 2.405972e-03	k: 646	n:290000
Cons ci ratio: 5.657555e-01	ci left: 1.190845e-04	ci right 2.155116e-04	k: 47	n:290000
KS ci ratio: 3.400714e-02	ci left: 4.306484e-02	ci right 4.455808e-02	k: 12704	n:290000
CSRNP3   290000 perm   96 sec   (3031 perm/sec)   p_kst 4.380690e-02   p_cons 1.620690e-04   p_joint 2.227586e-03

Joint ci ratio: 1.337913e-01	ci left: 2.662389e-03	ci right 3.047315e-03	k: 855	n:300000
Cons ci ratio: 5.599533e-01	ci left: 1.179737e-04	ci right 2.121313e-04	k: 48	n:300000
KS ci ratio: 3.344767e-02	ci left: 4.304728e-02	ci right 4.451488e-02	k: 13133	n:300000
CSRNP3   300000 perm   100 sec   (2991 perm/sec)   p_kst 4.377667e-02   p_cons 1.600000e-04   p_joint 2.850000e-03

Joint ci ratio: 1.368784e-01	ci left: 2.458056e-03	ci right 2.822308e-03	k: 817	n:310000
Cons ci ratio: 5.488638e-01	ci left: 1.197151e-04	ci right 2.126357e-04	k: 50	n:310000
KS ci ratio: 3.286049e-02	ci left: 4.316866e-02	ci right 4.461408e-02	k: 13605	n:310000
CSRNP3   310000 perm   105 sec   (2952 perm/sec)   p_kst 4.388710e-02   p_cons 1.612903e-04   p_joint 2.635484e-03

Joint ci ratio: 1.343553e-01	ci left: 2.474832e-03	ci right 2.834269e-03	k: 848	n:320000
Cons ci ratio: 5.435612e-01	ci left: 1.186674e-04	ci right 2.095434e-04	k: 51	n:320000
KS ci ratio: 3.232120e-02	ci left: 4.323615e-02	ci right 4.465963e-02	k: 14062	n:320000
CSRNP3   320000 perm   110 sec   (2914 perm/sec)   p_kst 4.394375e-02   p_cons 1.593750e-04   p_joint 2.650000e-03

Joint ci ratio: 1.318166e-01	ci left: 2.496510e-03	ci right 2.851707e-03	k: 881	n:330000
Cons ci ratio: 5.334000e-01	ci left: 1.203072e-04	ci right 2.100715e-04	k: 53	n:330000
KS ci ratio: 3.180991e-02	ci left: 4.329371e-02	ci right 4.469613e-02	k: 14517	n:330000
CSRNP3   330000 perm   115 sec   (2879 perm/sec)   p_kst 4.399091e-02   p_cons 1.606061e-04   p_joint 2.669697e-03

Joint ci ratio: 1.298441e-01	ci left: 2.499896e-03	ci right 2.849843e-03	k: 908	n:340000
Cons ci ratio: 5.334013e-01	ci left: 1.167687e-04	ci right 2.038931e-04	k: 53	n:340000
KS ci ratio: 3.136928e-02	ci left: 4.322254e-02	ci right 4.460290e-02	k: 14929	n:340000
CSRNP3   340000 perm   120 sec   (2845 perm/sec)   p_kst 4.390882e-02   p_cons 1.558824e-04   p_joint 2.670588e-03

Joint ci ratio: 1.283708e-01	ci left: 2.486531e-03	ci right 2.830357e-03	k: 929	n:350000
Cons ci ratio: 5.237894e-01	ci left: 1.183836e-04	ci right 2.045382e-04	k: 55	n:350000
KS ci ratio: 3.087707e-02	ci left: 4.334273e-02	ci right 4.470483e-02	k: 15407	n:350000
CSRNP3   350000 perm   124 sec   (2812 perm/sec)   p_kst 4.402000e-02   p_cons 1.571429e-04   p_joint 2.654286e-03

Joint ci ratio: 1.278255e-01	ci left: 2.438967e-03	ci right 2.774675e-03	k: 937	n:360000
Cons ci ratio: 5.102980e-01	ci left: 1.223406e-04	ci right 2.082686e-04	k: 58	n:360000
KS ci ratio: 3.049276e-02	ci left: 4.322202e-02	ci right 4.456312e-02	k: 15800	n:360000
CSRNP3   360000 perm   130 sec   (2779 perm/sec)   p_kst 4.388889e-02   p_cons 1.611111e-04   p_joint 2.602778e-03

Joint ci ratio: 1.295727e-01	ci left: 2.307647e-03	ci right 2.629954e-03	k: 912	n:370000
Cons ci ratio: 5.102992e-01	ci left: 1.190341e-04	ci right 2.026398e-04	k: 58	n:370000
KS ci ratio: 3.007877e-02	ci left: 4.322867e-02	ci right 4.455145e-02	k: 16238	n:370000
CSRNP3   370000 perm   135 sec   (2748 perm/sec)   p_kst 4.388649e-02   p_cons 1.567568e-04   p_joint 2.464865e-03

Joint ci ratio: 1.281084e-01	ci left: 2.300400e-03	ci right 2.617789e-03	k: 933	n:380000
Cons ci ratio: 5.103002e-01	ci left: 1.159015e-04	ci right 1.973073e-04	k: 58	n:380000
KS ci ratio: 2.967374e-02	ci left: 4.325600e-02	ci right 4.456149e-02	k: 16684	n:380000
CSRNP3   380000 perm   140 sec   (2716 perm/sec)   p_kst 4.390526e-02   p_cons 1.526316e-04   p_joint 2.455263e-03

Joint ci ratio: 1.294389e-01	ci left: 2.194259e-03	ci right 2.500389e-03	k: 914	n:390000
Cons ci ratio: 5.103013e-01	ci left: 1.129296e-04	ci right 1.922483e-04	k: 58	n:390000
KS ci ratio: 2.932406e-02	ci left: 4.317001e-02	ci right 4.445729e-02	k: 17086	n:390000
CSRNP3   390000 perm   145 sec   (2687 perm/sec)   p_kst 4.381026e-02   p_cons 1.487179e-04   p_joint 2.343590e-03

Joint ci ratio: 1.279791e-01	ci left: 2.190212e-03	ci right 2.492069e-03	k: 935	n:400000
Cons ci ratio: 5.018657e-01	ci left: 1.144677e-04	ci right 1.930756e-04	k: 60	n:400000
KS ci ratio: 2.893545e-02	ci left: 4.323489e-02	ci right 4.450673e-02	k: 17547	n:400000
CSRNP3   400000 perm   150 sec   (2659 perm/sec)   p_kst 4.386750e-02   p_cons 1.500000e-04   p_joint 2.337500e-03

Joint ci ratio: 9.053973e-02	ci left: 4.345094e-03	ci right 4.759517e-03	k: 1865	n:410000
Cons ci ratio: 4.899612e-01	ci left: 1.180774e-04	ci right 1.965918e-04	k: 63	n:410000
KS ci ratio: 2.862095e-02	ci left: 4.312471e-02	ci right 4.437931e-02	k: 17937	n:410000
CSRNP3   410000 perm   156 sec   (2629 perm/sec)   p_kst 4.374878e-02   p_cons 1.536585e-04   p_joint 4.548780e-03

Joint ci ratio: 8.951449e-02	ci left: 4.341715e-03	ci right 4.750881e-03	k: 1908	n:420000
Cons ci ratio: 4.899621e-01	ci left: 1.152660e-04	ci right 1.919111e-04	k: 63	n:420000
KS ci ratio: 2.829953e-02	ci left: 4.306952e-02	ci right 4.430821e-02	k: 18348	n:420000
CSRNP3   420000 perm   162 sec   (2600 perm/sec)   p_kst 4.368571e-02   p_cons 1.500000e-04   p_joint 4.542857e-03

Joint ci ratio: 9.419290e-02	ci left: 3.822613e-03	ci right 4.202723e-03	k: 1724	n:430000
Cons ci ratio: 4.861788e-01	ci left: 1.146246e-04	ci right 1.900579e-04	k: 64	n:430000
KS ci ratio: 2.795443e-02	ci left: 4.311862e-02	ci right 4.434335e-02	k: 18803	n:430000
CSRNP3   430000 perm   167 sec   (2569 perm/sec)   p_kst 4.372791e-02   p_cons 1.488372e-04   p_joint 4.009302e-03

Joint ci ratio: 9.712340e-02	ci left: 3.509434e-03	ci right 3.869878e-03	k: 1622	n:440000
Cons ci ratio: 4.861797e-01	ci left: 1.120195e-04	ci right 1.857385e-04	k: 64	n:440000
KS ci ratio: 2.762391e-02	ci left: 4.315880e-02	ci right 4.436995e-02	k: 19255	n:440000
CSRNP3   440000 perm   173 sec   (2541 perm/sec)   p_kst 4.376136e-02   p_cons 1.454545e-04   p_joint 3.686364e-03

Joint ci ratio: 9.676901e-02	ci left: 3.457462e-03	ci right 3.811199e-03	k: 1634	n:450000
Cons ci ratio: 4.824827e-01	ci left: 1.114809e-04	ci right 1.841027e-04	k: 65	n:450000
KS ci ratio: 2.730702e-02	ci left: 4.319065e-02	ci right 4.438857e-02	k: 19704	n:450000
CSRNP3   450000 perm   179 sec   (2515 perm/sec)   p_kst 4.378667e-02   p_cons 1.444444e-04   p_joint 3.631111e-03

Joint ci ratio: 9.589392e-02	ci left: 3.445945e-03	ci right 3.795136e-03	k: 1664	n:460000
Cons ci ratio: 4.824835e-01	ci left: 1.090574e-04	ci right 1.801005e-04	k: 65	n:460000
KS ci ratio: 2.702183e-02	ci left: 4.315639e-02	ci right 4.434067e-02	k: 20123	n:460000
CSRNP3   460000 perm   185 sec   (2489 perm/sec)   p_kst 4.374565e-02   p_cons 1.413043e-04   p_joint 3.617391e-03

Joint ci ratio: 9.546703e-02	ci left: 3.403775e-03	ci right 3.747071e-03	k: 1679	n:470000
Cons ci ratio: 4.753349e-01	ci left: 1.104784e-04	ci right 1.810340e-04	k: 67	n:470000
KS ci ratio: 2.670938e-02	ci left: 4.323570e-02	ci right 4.440823e-02	k: 20595	n:470000
CSRNP3   470000 perm   191 sec   (2462 perm/sec)   p_kst 4.381915e-02   p_cons 1.425532e-04   p_joint 3.572340e-03

Joint ci ratio: 9.429499e-02	ci left: 3.418288e-03	ci right 3.758581e-03	k: 1721	n:480000
Cons ci ratio: 4.718781e-01	ci left: 1.100113e-04	ci right 1.795929e-04	k: 68	n:480000
KS ci ratio: 2.641539e-02	ci left: 4.328694e-02	ci right 4.444774e-02	k: 21055	n:480000
CSRNP3   480000 perm   197 sec   (2436 perm/sec)   p_kst 4.386458e-02   p_cons 1.416667e-04   p_joint 3.585417e-03

Joint ci ratio: 8.809606e-02	ci left: 3.847144e-03	ci right 4.203658e-03	k: 1971	n:490000
Cons ci ratio: 4.684957e-01	ci left: 1.095651e-04	ci right 1.782087e-04	k: 69	n:490000
KS ci ratio: 2.616525e-02	ci left: 4.322664e-02	ci right 4.437468e-02	k: 21461	n:490000
CSRNP3   490000 perm   203 sec   (2413 perm/sec)   p_kst 4.379796e-02   p_cons 1.408163e-04   p_joint 4.022449e-03

Joint ci ratio: 8.712907e-02	ci left: 3.856273e-03	ci right 4.209512e-03	k: 2015	n:500000
Cons ci ratio: 4.619427e-01	ci left: 1.109048e-04	ci right 1.791104e-04	k: 71	n:500000
KS ci ratio: 2.590290e-02	ci left: 4.323042e-02	ci right 4.436687e-02	k: 21898	n:500000
CSRNP3   500000 perm   209 sec   (2390 perm/sec)   p_kst 4.379600e-02   p_cons 1.420000e-04   p_joint 4.030000e-03

Joint ci ratio: 8.631954e-02	ci left: 3.853554e-03	ci right 4.203098e-03	k: 2053	n:510000
Cons ci ratio: 4.619434e-01	ci left: 1.087302e-04	ci right 1.755985e-04	k: 71	n:510000
KS ci ratio: 2.564468e-02	ci left: 4.324580e-02	ci right 4.437116e-02	k: 22341	n:510000
CSRNP3   510000 perm   216 sec   (2366 perm/sec)   p_kst 4.380588e-02   p_cons 1.392157e-04   p_joint 4.025490e-03

Joint ci ratio: 8.567620e-02	ci left: 3.837779e-03	ci right 4.183168e-03	k: 2084	n:520000
Cons ci ratio: 4.619440e-01	ci left: 1.066392e-04	ci right 1.722216e-04	k: 71	n:520000
KS ci ratio: 2.537773e-02	ci left: 4.331416e-02	ci right 4.442939e-02	k: 22812	n:520000
CSRNP3   520000 perm   222 sec   (2343 perm/sec)   p_kst 4.386923e-02   p_cons 1.365385e-04   p_joint 4.007692e-03

Joint ci ratio: 8.498656e-02	ci left: 3.828149e-03	ci right 4.169761e-03	k: 2118	n:530000
Cons ci ratio: 4.556585e-01	ci left: 1.079644e-04	ci right 1.731791e-04	k: 73	n:530000
KS ci ratio: 2.513984e-02	ci left: 4.331060e-02	ci right 4.441514e-02	k: 23246	n:530000
CSRNP3   530000 perm   228 sec   (2320 perm/sec)   p_kst 4.386038e-02   p_cons 1.377358e-04   p_joint 3.996226e-03

Joint ci ratio: 8.453039e-02	ci left: 3.798945e-03	ci right 4.136041e-03	k: 2141	n:540000
Cons ci ratio: 4.556591e-01	ci left: 1.059651e-04	ci right 1.699721e-04	k: 73	n:540000
KS ci ratio: 2.491127e-02	ci left: 4.329803e-02	ci right 4.439206e-02	k: 23675	n:540000
CSRNP3   540000 perm   235 sec   (2297 perm/sec)   p_kst 4.384259e-02   p_cons 1.351852e-04   p_joint 3.964815e-03

Joint ci ratio: 8.394533e-02	ci left: 3.783268e-03	ci right 4.116536e-03	k: 2171	n:550000
Cons ci ratio: 4.496234e-01	ci left: 1.072601e-04	ci right 1.709300e-04	k: 75	n:550000
KS ci ratio: 2.468935e-02	ci left: 4.328414e-02	ci right 4.436794e-02	k: 24103	n:550000
CSRNP3   550000 perm   242 sec   (2275 perm/sec)   p_kst 4.382364e-02   p_cons 1.363636e-04   p_joint 3.947273e-03

Joint ci ratio: 8.489522e-02	ci left: 3.631793e-03	ci right 3.955517e-03	k: 2123	n:560000
Cons ci ratio: 4.410030e-01	ci left: 1.101011e-04	ci right 1.738319e-04	k: 78	n:560000
KS ci ratio: 2.447379e-02	ci left: 4.326902e-02	ci right 4.434285e-02	k: 24530	n:560000
CSRNP3   560000 perm   248 sec   (2254 perm/sec)   p_kst 4.380357e-02   p_cons 1.392857e-04   p_joint 3.791071e-03

Joint ci ratio: 8.414584e-02	ci left: 3.633335e-03	ci right 3.954197e-03	k: 2161	n:570000
Cons ci ratio: 4.382382e-01	ci left: 1.097296e-04	ci right 1.727296e-04	k: 79	n:570000
KS ci ratio: 2.426581e-02	ci left: 4.324749e-02	ci right 4.431154e-02	k: 24953	n:570000
CSRNP3   570000 perm   256 sec   (2231 perm/sec)   p_kst 4.377719e-02   p_cons 1.385965e-04   p_joint 3.791228e-03

Joint ci ratio: 8.994986e-02	ci left: 3.116945e-03	ci right 3.412189e-03	k: 1892	n:580000
Cons ci ratio: 4.328606e-01	ci left: 1.109079e-04	ci right 1.735757e-04	k: 81	n:580000
KS ci ratio: 2.405660e-02	ci left: 4.324903e-02	ci right 4.430381e-02	k: 25389	n:580000
CSRNP3   580000 perm   263 sec   (2209 perm/sec)   p_kst 4.377414e-02   p_cons 1.396552e-04   p_joint 3.262069e-03

Joint ci ratio: 8.988094e-02	ci left: 3.069083e-03	ci right 3.359558e-03	k: 1895	n:590000
Cons ci ratio: 4.328611e-01	ci left: 1.090280e-04	ci right 1.706338e-04	k: 81	n:590000
KS ci ratio: 2.385802e-02	ci left: 4.323201e-02	ci right 4.427756e-02	k: 25814	n:590000
CSRNP3   590000 perm   270 sec   (2188 perm/sec)   p_kst 4.375254e-02   p_cons 1.372881e-04   p_joint 3.211864e-03

Joint ci ratio: 8.913193e-02	ci left: 3.070071e-03	ci right 3.358092e-03	k: 1927	n:600000
Cons ci ratio: 4.302458e-01	ci left: 1.086965e-04	ci right 1.696366e-04	k: 82	n:600000
KS ci ratio: 2.366523e-02	ci left: 4.321228e-02	ci right 4.424880e-02	k: 26237	n:600000
CSRNP3   600000 perm   277 sec   (2167 perm/sec)   p_kst 4.372833e-02   p_cons 1.366667e-04   p_joint 3.211667e-03

Joint ci ratio: 8.835612e-02	ci left: 3.074243e-03	ci right 3.360016e-03	k: 1961	n:610000
Cons ci ratio: 4.276773e-01	ci left: 1.083769e-04	ci right 1.686710e-04	k: 83	n:610000
KS ci ratio: 2.345817e-02	ci left: 4.326007e-02	ci right 4.428853e-02	k: 26701	n:610000
CSRNP3   610000 perm   284 sec   (2146 perm/sec)   p_kst 4.377213e-02   p_cons 1.360656e-04   p_joint 3.214754e-03

Joint ci ratio: 8.762225e-02	ci left: 3.076713e-03	ci right 3.360218e-03	k: 1994	n:620000
Cons ci ratio: 4.276777e-01	ci left: 1.066288e-04	ci right 1.659505e-04	k: 83	n:620000
KS ci ratio: 2.327439e-02	ci left: 4.324220e-02	ci right 4.426207e-02	k: 27125	n:620000
CSRNP3   620000 perm   292 sec   (2126 perm/sec)   p_kst 4.375000e-02   p_cons 1.338710e-04   p_joint 3.216129e-03

Joint ci ratio: 8.930153e-02	ci left: 2.913003e-03	ci right 3.186836e-03	k: 1920	n:630000
Cons ci ratio: 4.276782e-01	ci left: 1.049363e-04	ci right 1.633164e-04	k: 83	n:630000
KS ci ratio: 2.308259e-02	ci left: 4.326912e-02	ci right 4.428111e-02	k: 27577	n:630000
CSRNP3   630000 perm   299 sec   (2106 perm/sec)   p_kst 4.377302e-02   p_cons 1.317460e-04   p_joint 3.047619e-03

Joint ci ratio: 8.847596e-02	ci left: 2.922488e-03	ci right 3.194541e-03	k: 1956	n:640000
Cons ci ratio: 4.276787e-01	ci left: 1.032967e-04	ci right 1.607647e-04	k: 83	n:640000
KS ci ratio: 2.290144e-02	ci left: 4.327348e-02	ci right 4.427753e-02	k: 28015	n:640000
CSRNP3   640000 perm   307 sec   (2088 perm/sec)   p_kst 4.377344e-02   p_cons 1.296875e-04   p_joint 3.056250e-03

Joint ci ratio: 9.135560e-02	ci left: 2.695543e-03	ci right 2.955073e-03	k: 1835	n:650000
Cons ci ratio: 4.226762e-01	ci left: 1.044551e-04	ci right 1.616957e-04	k: 85	n:650000
KS ci ratio: 2.273410e-02	ci left: 4.324255e-02	ci right 4.423845e-02	k: 28430	n:650000
CSRNP3   650000 perm   314 sec   (2069 perm/sec)   p_kst 4.373846e-02   p_cons 1.307692e-04   p_joint 2.823077e-03

Joint ci ratio: 9.066687e-02	ci left: 2.696160e-03	ci right 2.953689e-03	k: 1863	n:660000
Cons ci ratio: 4.226766e-01	ci left: 1.028724e-04	ci right 1.592458e-04	k: 85	n:660000
KS ci ratio: 2.256751e-02	ci left: 4.322313e-02	ci right 4.421119e-02	k: 28852	n:660000
CSRNP3   660000 perm   322 sec   (2052 perm/sec)   p_kst 4.371515e-02   p_cons 1.287879e-04   p_joint 2.822727e-03

Joint ci ratio: 9.042588e-02	ci left: 2.670505e-03	ci right 2.924869e-03	k: 1873	n:670000
Cons ci ratio: 4.226770e-01	ci left: 1.013370e-04	ci right 1.568690e-04	k: 85	n:670000
KS ci ratio: 2.238574e-02	ci left: 4.327408e-02	ci right 4.425524e-02	k: 29321	n:670000
CSRNP3   670000 perm   329 sec   (2035 perm/sec)   p_kst 4.376269e-02   p_cons 1.268657e-04   p_joint 2.795522e-03

Joint ci ratio: 8.994771e-02	ci left: 2.659980e-03	ci right 2.911932e-03	k: 1893	n:680000
Cons ci ratio: 4.226774e-01	ci left: 9.984674e-05	ci right 1.545622e-04	k: 85	n:680000
KS ci ratio: 2.220908e-02	ci left: 4.332065e-02	ci right 4.429501e-02	k: 29788	n:680000
CSRNP3   680000 perm   337 sec   (2018 perm/sec)   p_kst 4.380588e-02   p_cons 1.250000e-04   p_joint 2.783824e-03

Joint ci ratio: 9.240339e-02	ci left: 2.481212e-03	ci right 2.722994e-03	k: 1794	n:690000
Cons ci ratio: 4.226778e-01	ci left: 9.839967e-05	ci right 1.523222e-04	k: 85	n:690000
KS ci ratio: 2.203958e-02	ci left: 4.335436e-02	ci right 4.432194e-02	k: 30247	n:690000
CSRNP3   690000 perm   345 sec   (2001 perm/sec)   p_kst 4.383623e-02   p_cons 1.231884e-04   p_joint 2.600000e-03

Joint ci ratio: 8.392288e-02	ci left: 2.976712e-03	ci right 3.238855e-03	k: 2174	n:700000
Cons ci ratio: 4.178468e-01	ci left: 9.954892e-05	ci right 1.533037e-04	k: 87	n:700000
KS ci ratio: 2.188359e-02	ci left: 4.335018e-02	ci right 4.431074e-02	k: 30680	n:700000
CSRNP3   700000 perm   353 sec   (1985 perm/sec)   p_kst 4.382857e-02   p_cons 1.242857e-04   p_joint 3.105714e-03

Joint ci ratio: 8.433408e-02	ci left: 2.905827e-03	ci right 3.163043e-03	k: 2153	n:710000
Cons ci ratio: 4.178472e-01	ci left: 9.814681e-05	ci right 1.511446e-04	k: 87	n:710000
KS ci ratio: 2.174330e-02	ci left: 4.329851e-02	ci right 4.425170e-02	k: 31079	n:710000
CSRNP3   710000 perm   361 sec   (1968 perm/sec)   p_kst 4.377324e-02   p_cons 1.225352e-04   p_joint 3.032394e-03

Joint ci ratio: 8.346587e-02	ci left: 2.926658e-03	ci right 3.182922e-03	k: 2198	n:720000
Cons ci ratio: 4.109014e-01	ci left: 1.005159e-04	ci right 1.536440e-04	k: 90	n:720000
KS ci ratio: 2.158202e-02	ci left: 4.333949e-02	ci right 4.428641e-02	k: 31544	n:720000
CSRNP3   720000 perm   369 sec   (1952 perm/sec)   p_kst 4.381111e-02   p_cons 1.250000e-04   p_joint 3.052778e-03

Joint ci ratio: 8.301446e-02	ci left: 2.918759e-03	ci right 3.172881e-03	k: 2222	n:730000
Cons ci ratio: 4.064589e-01	ci left: 1.015970e-04	ci right 1.545592e-04	k: 92	n:730000
KS ci ratio: 2.143618e-02	ci left: 4.333303e-02	ci right 4.427333e-02	k: 31975	n:730000
CSRNP3   730000 perm   377 sec   (1937 perm/sec)   p_kst 4.380137e-02   p_cons 1.260274e-04   p_joint 3.043836e-03

Joint ci ratio: 8.428045e-02	ci left: 2.791985e-03	ci right 3.038959e-03	k: 2156	n:740000
Cons ci ratio: 4.064592e-01	ci left: 1.002241e-04	ci right 1.524706e-04	k: 92	n:740000
KS ci ratio: 2.129739e-02	ci left: 4.331063e-02	ci right 4.424429e-02	k: 32394	n:740000
CSRNP3   740000 perm   385 sec   (1921 perm/sec)   p_kst 4.377568e-02   p_cons 1.243243e-04   p_joint 2.913514e-03

Joint ci ratio: 8.373876e-02	ci left: 2.791307e-03	ci right 3.036557e-03	k: 2184	n:750000
Cons ci ratio: 4.042915e-01	ci left: 1.000851e-04	ci right 1.519063e-04	k: 93	n:750000
KS ci ratio: 2.115115e-02	ci left: 4.332865e-02	ci right 4.425621e-02	k: 32843	n:750000
CSRNP3   750000 perm   393 sec   (1907 perm/sec)   p_kst 4.379067e-02   p_cons 1.240000e-04   p_joint 2.912000e-03

Joint ci ratio: 8.324512e-02	ci left: 2.788076e-03	ci right 3.031527e-03	k: 2210	n:760000
Cons ci ratio: 4.021581e-01	ci left: 9.995055e-05	ci right 1.513561e-04	k: 94	n:760000
KS ci ratio: 2.100524e-02	ci left: 4.335669e-02	ci right 4.427837e-02	k: 33300	n:760000
CSRNP3   760000 perm   402 sec   (1893 perm/sec)   p_kst 4.381579e-02   p_cons 1.236842e-04   p_joint 2.907895e-03

Joint ci ratio: 8.307729e-02	ci left: 2.763311e-03	ci right 3.004090e-03	k: 2219	n:770000
Cons ci ratio: 4.000581e-01	ci left: 9.982017e-05	ci right 1.508195e-04	k: 95	n:770000
KS ci ratio: 2.086684e-02	ci left: 4.336593e-02	ci right 4.428166e-02	k: 33743	n:770000
CSRNP3   770000 perm   410 sec   (1879 perm/sec)   p_kst 4.382208e-02   p_cons 1.233766e-04   p_joint 2.881818e-03

Joint ci ratio: 8.250314e-02	ci left: 2.766804e-03	ci right 3.006142e-03	k: 2250	n:780000
Cons ci ratio: 4.000584e-01	ci left: 9.854041e-05	ci right 1.488859e-04	k: 95	n:780000
KS ci ratio: 2.072447e-02	ci left: 4.340175e-02	ci right 4.431190e-02	k: 34207	n:780000
CSRNP3   780000 perm   419 sec   (1864 perm/sec)   p_kst 4.385513e-02   p_cons 1.217949e-04   p_joint 2.884615e-03

Joint ci ratio: 8.233974e-02	ci left: 2.742938e-03	ci right 2.979718e-03	k: 2259	n:790000
Cons ci ratio: 3.919749e-01	ci left: 1.018522e-04	ci right 1.525662e-04	k: 99	n:790000
KS ci ratio: 2.058996e-02	ci left: 4.341652e-02	ci right 4.432101e-02	k: 34655	n:790000
CSRNP3   790000 perm   427 sec   (1850 perm/sec)   p_kst 4.386709e-02   p_cons 1.253165e-04   p_joint 2.859494e-03

Joint ci ratio: 8.208663e-02	ci left: 2.725790e-03	ci right 2.960332e-03	k: 2273	n:800000
Cons ci ratio: 3.881128e-01	ci left: 1.028338e-04	ci right 1.534031e-04	k: 101	n:800000
KS ci ratio: 2.045924e-02	ci left: 4.342597e-02	ci right 4.432484e-02	k: 35099	n:800000
CSRNP3   800000 perm   436 sec   (1836 perm/sec)   p_kst 4.387375e-02   p_cons 1.262500e-04   p_joint 2.841250e-03

Joint ci ratio: 8.149719e-02	ci left: 2.732046e-03	ci right 2.965359e-03	k: 2306	n:810000
Cons ci ratio: 3.862243e-01	ci left: 1.026787e-04	ci right 1.528634e-04	k: 102	n:810000
KS ci ratio: 2.032621e-02	ci left: 4.345486e-02	ci right 4.434841e-02	k: 35559	n:810000
CSRNP3   810000 perm   445 sec   (1822 perm/sec)   p_kst 4.390000e-02   p_cons 1.259259e-04   p_joint 2.846914e-03

Joint ci ratio: 8.088561e-02	ci left: 2.740546e-03	ci right 2.972745e-03	k: 2341	n:820000
Cons ci ratio: 3.825281e-01	ci left: 1.036298e-04	ci right 1.536728e-04	k: 104	n:820000
KS ci ratio: 2.020277e-02	ci left: 4.345393e-02	ci right 4.434198e-02	k: 35995	n:820000
CSRNP3   820000 perm   454 sec   (1807 perm/sec)   p_kst 4.389634e-02   p_cons 1.268293e-04   p_joint 2.854878e-03

Joint ci ratio: 8.052576e-02	ci left: 2.732317e-03	ci right 2.962741e-03	k: 2362	n:830000
Cons ci ratio: 3.825284e-01	ci left: 1.023813e-04	ci right 1.518214e-04	k: 104	n:830000
KS ci ratio: 2.008271e-02	ci left: 4.344825e-02	ci right 4.433084e-02	k: 36427	n:830000
CSRNP3   830000 perm   463 sec   (1793 perm/sec)   p_kst 4.388795e-02   p_cons 1.253012e-04   p_joint 2.845783e-03

Joint ci ratio: 8.619900e-02	ci left: 2.350063e-03	ci right 2.562915e-03	k: 2062	n:840000
Cons ci ratio: 3.825287e-01	ci left: 1.011624e-04	ci right 1.500140e-04	k: 104	n:840000
KS ci ratio: 1.995769e-02	ci left: 4.347234e-02	ci right 4.434986e-02	k: 36884	n:840000
CSRNP3   840000 perm   472 sec   (1780 perm/sec)   p_kst 4.390952e-02   p_cons 1.238095e-04   p_joint 2.454762e-03

Joint ci ratio: 8.535418e-02	ci left: 2.369617e-03	ci right 2.582032e-03	k: 2103	n:850000
Cons ci ratio: 3.825290e-01	ci left: 9.997228e-05	ci right 1.482491e-04	k: 104	n:850000
KS ci ratio: 1.983914e-02	ci left: 4.347831e-02	ci right 4.435068e-02	k: 37326	n:850000
CSRNP3   850000 perm   481 sec   (1766 perm/sec)   p_kst 4.391294e-02   p_cons 1.223529e-04   p_joint 2.474118e-03

Joint ci ratio: 8.481162e-02	ci left: 2.372790e-03	ci right 2.584071e-03	k: 2130	n:860000
Cons ci ratio: 3.789369e-01	ci left: 1.009128e-04	ci right 1.490724e-04	k: 106	n:860000
KS ci ratio: 1.972295e-02	ci left: 4.348301e-02	ci right 4.435030e-02	k: 37767	n:860000
CSRNP3   860000 perm   490 sec   (1754 perm/sec)   p_kst 4.391512e-02   p_cons 1.232558e-04   p_joint 2.476744e-03

Joint ci ratio: 8.414258e-02	ci left: 2.383772e-03	ci right 2.594274e-03	k: 2164	n:870000
Cons ci ratio: 3.789372e-01	ci left: 9.975290e-05	ci right 1.473590e-04	k: 106	n:870000
KS ci ratio: 1.960019e-02	ci left: 4.352422e-02	ci right 4.438687e-02	k: 38240	n:870000
CSRNP3   870000 perm   500 sec   (1740 perm/sec)   p_kst 4.395402e-02   p_cons 1.218391e-04   p_joint 2.487356e-03

Joint ci ratio: 8.511483e-02	ci left: 2.302177e-03	ci right 2.507939e-03	k: 2115	n:880000
Cons ci ratio: 3.737338e-01	ci left: 1.017060e-04	ci right 1.494145e-04	k: 109	n:880000
KS ci ratio: 1.948971e-02	ci left: 4.352152e-02	ci right 4.437921e-02	k: 38675	n:880000
CSRNP3   880000 perm   509 sec   (1727 perm/sec)   p_kst 4.394886e-02   p_cons 1.238636e-04   p_joint 2.403409e-03

Joint ci ratio: 8.473549e-02	ci left: 2.297204e-03	ci right 2.501562e-03	k: 2134	n:890000
Cons ci ratio: 3.720465e-01	ci left: 1.015815e-04	ci right 1.489641e-04	k: 110	n:890000
KS ci ratio: 1.937874e-02	ci left: 4.352897e-02	ci right 4.438187e-02	k: 39119	n:890000
CSRNP3   890000 perm   519 sec   (1714 perm/sec)   p_kst 4.395393e-02   p_cons 1.235955e-04   p_joint 2.397753e-03

Joint ci ratio: 8.491622e-02	ci left: 2.261890e-03	ci right 2.463556e-03	k: 2125	n:900000
Cons ci ratio: 3.687392e-01	ci left: 1.024682e-04	ci right 1.497371e-04	k: 112	n:900000
KS ci ratio: 1.927347e-02	ci left: 4.351968e-02	ci right 4.436771e-02	k: 39548	n:900000
CSRNP3   900000 perm   529 sec   (1702 perm/sec)   p_kst 4.394222e-02   p_cons 1.244444e-04   p_joint 2.361111e-03

Joint ci ratio: 8.791056e-02	ci left: 2.084353e-03	ci right 2.277080e-03	k: 1983	n:910000
Cons ci ratio: 3.671184e-01	ci left: 1.023395e-04	ci right 1.492917e-04	k: 113	n:910000
KS ci ratio: 1.917140e-02	ci left: 4.350404e-02	ci right 4.434722e-02	k: 39971	n:910000
CSRNP3   910000 perm   538 sec   (1690 perm/sec)   p_kst 4.392418e-02   p_cons 1.241758e-04   p_joint 2.179121e-03

Joint ci ratio: 8.773452e-02	ci left: 2.070201e-03	ci right 2.261216e-03	k: 1991	n:920000
Cons ci ratio: 3.655188e-01	ci left: 1.022140e-04	ci right 1.488556e-04	k: 114	n:920000
KS ci ratio: 1.907069e-02	ci left: 4.348983e-02	ci right 4.432826e-02	k: 40395	n:920000
CSRNP3   920000 perm   548 sec   (1678 perm/sec)   p_kst 4.390761e-02   p_cons 1.239130e-04   p_joint 2.164130e-03

Joint ci ratio: 8.729745e-02	ci left: 2.068975e-03	ci right 2.258878e-03	k: 2011	n:930000
Cons ci ratio: 3.655191e-01	ci left: 1.011149e-04	ci right 1.472550e-04	k: 114	n:930000
KS ci ratio: 1.897592e-02	ci left: 4.345667e-02	ci right 4.429026e-02	k: 40801	n:930000
CSRNP3   930000 perm   558 sec   (1666 perm/sec)   p_kst 4.387204e-02   p_cons 1.225806e-04   p_joint 2.162366e-03

Joint ci ratio: 8.680266e-02	ci left: 2.070900e-03	ci right 2.259848e-03	k: 2034	n:940000
Cons ci ratio: 3.623814e-01	ci left: 1.019724e-04	ci right 1.480098e-04	k: 116	n:940000
KS ci ratio: 1.887609e-02	ci left: 4.345282e-02	ci right 4.428190e-02	k: 41234	n:940000
CSRNP3   940000 perm   568 sec   (1654 perm/sec)   p_kst 4.386596e-02   p_cons 1.234043e-04   p_joint 2.163830e-03

Joint ci ratio: 8.625320e-02	ci left: 2.075878e-03	ci right 2.264020e-03	k: 2060	n:950000
Cons ci ratio: 3.623816e-01	ci left: 1.008990e-04	ci right 1.464518e-04	k: 116	n:950000
KS ci ratio: 1.877475e-02	ci left: 4.346269e-02	ci right 4.428746e-02	k: 41680	n:950000
CSRNP3   950000 perm   578 sec   (1643 perm/sec)   p_kst 4.387368e-02   p_cons 1.221053e-04   p_joint 2.168421e-03

Joint ci ratio: 8.569348e-02	ci left: 2.081775e-03	ci right 2.269166e-03	k: 2087	n:960000
Cons ci ratio: 3.608429e-01	ci left: 1.007950e-04	ci right 1.460622e-04	k: 117	n:960000
KS ci ratio: 1.867155e-02	ci left: 4.348792e-02	ci right 4.430858e-02	k: 42141	n:960000
CSRNP3   960000 perm   588 sec   (1631 perm/sec)   p_kst 4.389688e-02   p_cons 1.218750e-04   p_joint 2.173958e-03

Joint ci ratio: 8.520510e-02	ci left: 2.084527e-03	ci right 2.271043e-03	k: 2111	n:970000
Cons ci ratio: 3.578231e-01	ci left: 1.016316e-04	ci right 1.468036e-04	k: 119	n:970000
KS ci ratio: 1.856639e-02	ci left: 4.352906e-02	ci right 4.434583e-02	k: 42618	n:970000
CSRNP3   970000 perm   599 sec   (1620 perm/sec)   p_kst 4.393608e-02   p_cons 1.226804e-04   p_joint 2.176289e-03

Joint ci ratio: 8.508501e-02	ci left: 2.069247e-03	ci right 2.254123e-03	k: 2117	n:980000
Cons ci ratio: 3.578233e-01	ci left: 1.005945e-04	ci right 1.453057e-04	k: 119	n:980000
KS ci ratio: 1.847959e-02	ci left: 4.349420e-02	ci right 4.430646e-02	k: 43021	n:980000
CSRNP3   980000 perm   609 sec   (1609 perm/sec)   p_kst 4.389898e-02   p_cons 1.214286e-04   p_joint 2.160204e-03

Joint ci ratio: 8.446869e-02	ci left: 2.078996e-03	ci right 2.263330e-03	k: 2148	n:990000
Cons ci ratio: 3.548781e-01	ci left: 1.014178e-04	ci right 1.460382e-04	k: 121	n:990000
KS ci ratio: 1.838624e-02	ci left: 4.349525e-02	ci right 4.430338e-02	k: 43459	n:990000
CSRNP3   990000 perm   619 sec   (1599 perm/sec)   p_kst 4.389798e-02   p_cons 1.222222e-04   p_joint 2.169697e-03

Joint ci ratio: 8.400084e-02	ci left: 2.081700e-03	ci right 2.265202e-03	k: 2172	n:1000000
Cons ci ratio: 3.534326e-01	ci left: 1.013146e-04	ci right 1.456664e-04	k: 122	n:1000000
KS ci ratio: 1.829255e-02	ci left: 4.350426e-02	ci right 4.430839e-02	k: 43905	n:1000000
CSRNP3   1000000 perm   629 sec   (1589 perm/sec)   p_kst 4.390500e-02   p_cons 1.220000e-04   p_joint 2.172000e-03

Joint ci ratio: 8.371268e-02	ci left: 2.075629e-03	ci right 2.257938e-03	k: 2187	n:1010000
Cons ci ratio: 3.534328e-01	ci left: 1.003115e-04	ci right 1.442242e-04	k: 122	n:1010000
KS ci ratio: 1.820371e-02	ci left: 4.349732e-02	ci right 4.429738e-02	k: 44335	n:1010000
CSRNP3   1010000 perm   640 sec   (1578 perm/sec)   p_kst 4.389604e-02   p_cons 1.207921e-04   p_joint 2.165347e-03

Joint ci ratio: 8.357970e-02	ci left: 2.061998e-03	ci right 2.242808e-03	k: 2194	n:1020000
Cons ci ratio: 3.520048e-01	ci left: 1.002216e-04	ci right 1.438772e-04	k: 123	n:1020000
KS ci ratio: 1.811552e-02	ci left: 4.349346e-02	ci right 4.428953e-02	k: 44768	n:1020000
CSRNP3   1020000 perm   651 sec   (1568 perm/sec)   p_kst 4.389020e-02   p_cons 1.205882e-04   p_joint 2.150980e-03

Joint ci ratio: 8.320157e-02	ci left: 2.060992e-03	ci right 2.240856e-03	k: 2214	n:1030000
Cons ci ratio: 3.491998e-01	ci left: 1.010193e-04	ci right 1.445924e-04	k: 125	n:1030000
KS ci ratio: 1.802985e-02	ci left: 4.348388e-02	ci right 4.427597e-02	k: 45195	n:1030000
CSRNP3   1030000 perm   661 sec   (1558 perm/sec)   p_kst 4.387864e-02   p_cons 1.213592e-04   p_joint 2.149515e-03

Joint ci ratio: 8.286569e-02	ci left: 2.058123e-03	ci right 2.236976e-03	k: 2232	n:1040000
Cons ci ratio: 3.478223e-01	ci left: 1.009254e-04	ci right 1.442474e-04	k: 126	n:1040000
KS ci ratio: 1.794580e-02	ci left: 4.347258e-02	ci right 4.426073e-02	k: 45620	n:1040000
CSRNP3   1040000 perm   672 sec   (1548 perm/sec)   p_kst 4.386538e-02   p_cons 1.211538e-04   p_joint 2.146154e-03

Joint ci ratio: 8.611573e-02	ci left: 1.884690e-03	ci right 2.055219e-03	k: 2067	n:1050000
Cons ci ratio: 3.437853e-01	ci left: 1.025732e-04	ci right 1.459779e-04	k: 129	n:1050000
KS ci ratio: 1.785399e-02	ci left: 4.350323e-02	ci right 4.428786e-02	k: 46089	n:1050000
CSRNP3   1050000 perm   683 sec   (1538 perm/sec)   p_kst 4.389429e-02   p_cons 1.228571e-04   p_joint 1.968571e-03

Joint ci ratio: 8.568174e-02	ci left: 1.886296e-03	ci right 2.056067e-03	k: 2088	n:1060000
Cons ci ratio: 3.411708e-01	ci left: 1.033301e-04	ci right 1.466492e-04	k: 131	n:1060000
KS ci ratio: 1.776956e-02	ci left: 4.350513e-02	ci right 4.428605e-02	k: 46528	n:1060000
CSRNP3   1060000 perm   694 sec   (1528 perm/sec)   p_kst 4.389434e-02   p_cons 1.235849e-04   p_joint 1.969811e-03

Joint ci ratio: 8.541664e-02	ci left: 1.880556e-03	ci right 2.049261e-03	k: 2101	n:1070000
Cons ci ratio: 3.386151e-01	ci left: 1.040740e-04	ci right 1.473067e-04	k: 133	n:1070000
KS ci ratio: 1.768691e-02	ci left: 4.350421e-02	ci right 4.428144e-02	k: 46964	n:1070000
CSRNP3   1070000 perm   705 sec   (1518 perm/sec)   p_kst 4.389159e-02   p_cons 1.242991e-04   p_joint 1.963551e-03

Joint ci ratio: 8.501315e-02	ci left: 1.881268e-03	ci right 2.049199e-03	k: 2121	n:1080000
Cons ci ratio: 3.386153e-01	ci left: 1.031104e-04	ci right 1.459428e-04	k: 133	n:1080000
KS ci ratio: 1.761279e-02	ci left: 4.346827e-02	ci right 4.424158e-02	k: 47362	n:1080000
CSRNP3   1080000 perm   716 sec   (1509 perm/sec)   p_kst 4.385370e-02   p_cons 1.231481e-04   p_joint 1.963889e-03

Joint ci ratio: 8.443776e-02	ci left: 1.890051e-03	ci right 2.057568e-03	k: 2150	n:1090000
Cons ci ratio: 3.373588e-01	ci left: 1.030040e-04	ci right 1.455989e-04	k: 134	n:1090000
KS ci ratio: 1.753134e-02	ci left: 4.347229e-02	ci right 4.424206e-02	k: 47803	n:1090000
CSRNP3   1090000 perm   727 sec   (1499 perm/sec)   p_kst 4.385596e-02   p_cons 1.229358e-04   p_joint 1.972477e-03

Joint ci ratio: 8.578774e-02	ci left: 1.813252e-03	ci right 1.976661e-03	k: 2083	n:1100000
Cons ci ratio: 3.361163e-01	ci left: 1.028998e-04	ci right 1.452609e-04	k: 135	n:1100000
KS ci ratio: 1.745404e-02	ci left: 4.346176e-02	ci right 4.422792e-02	k: 48228	n:1100000
CSRNP3   1100000 perm   739 sec   (1489 perm/sec)   p_kst 4.384364e-02   p_cons 1.227273e-04   p_joint 1.893636e-03

Joint ci ratio: 8.554208e-02	ci left: 1.807496e-03	ci right 1.969896e-03	k: 2095	n:1110000
Cons ci ratio: 3.348874e-01	ci left: 1.027978e-04	ci right 1.449288e-04	k: 136	n:1110000
KS ci ratio: 1.737290e-02	ci left: 4.347475e-02	ci right 4.423754e-02	k: 48679	n:1110000
CSRNP3   1110000 perm   750 sec   (1480 perm/sec)   p_kst 4.385495e-02   p_cons 1.225225e-04   p_joint 1.887387e-03

Joint ci ratio: 8.507641e-02	ci left: 1.811455e-03	ci right 1.973281e-03	k: 2118	n:1120000
Cons ci ratio: 3.312796e-01	ci left: 1.043345e-04	ci right 1.465365e-04	k: 139	n:1120000
KS ci ratio: 1.729453e-02	ci left: 4.347952e-02	ci right 4.423891e-02	k: 49121	n:1120000
CSRNP3   1120000 perm   762 sec   (1470 perm/sec)   p_kst 4.385804e-02   p_cons 1.241071e-04   p_joint 1.891071e-03

Joint ci ratio: 8.463806e-02	ci left: 1.814481e-03	ci right 1.975700e-03	k: 2140	n:1130000
Cons ci ratio: 3.312798e-01	ci left: 1.034112e-04	ci right 1.452398e-04	k: 139	n:1130000
KS ci ratio: 1.721722e-02	ci left: 4.348421e-02	ci right 4.424026e-02	k: 49563	n:1130000
CSRNP3   1130000 perm   773 sec   (1461 perm/sec)   p_kst 4.386106e-02   p_cons 1.230088e-04   p_joint 1.893805e-03

Joint ci ratio: 8.422593e-02	ci left: 1.816596e-03	ci right 1.977179e-03	k: 2161	n:1140000
Cons ci ratio: 3.301030e-01	ci left: 1.033085e-04	ci right 1.449155e-04	k: 140	n:1140000
KS ci ratio: 1.713914e-02	ci left: 4.349756e-02	ci right 4.425037e-02	k: 50015	n:1140000
CSRNP3   1140000 perm   785 sec   (1452 perm/sec)   p_kst 4.387281e-02   p_cons 1.228070e-04   p_joint 1.895614e-03

Joint ci ratio: 8.385826e-02	ci left: 1.816974e-03	ci right 1.976855e-03	k: 2180	n:1150000
Cons ci ratio: 3.289386e-01	ci left: 1.032078e-04	ci right 1.445966e-04	k: 141	n:1150000
KS ci ratio: 1.706831e-02	ci left: 4.348037e-02	ci right 4.422975e-02	k: 50432	n:1150000
CSRNP3   1150000 perm   797 sec   (1443 perm/sec)   p_kst 4.385391e-02   p_cons 1.226087e-04   p_joint 1.895652e-03

Joint ci ratio: 8.347635e-02	ci left: 1.818192e-03	ci right 1.977415e-03	k: 2200	n:1160000
Cons ci ratio: 3.277865e-01	ci left: 1.031091e-04	ci right 1.442830e-04	k: 142	n:1160000
KS ci ratio: 1.700324e-02	ci left: 4.343945e-02	ci right 4.418524e-02	k: 50821	n:1160000
CSRNP3   1160000 perm   809 sec   (1434 perm/sec)   p_kst 4.381121e-02   p_cons 1.224138e-04   p_joint 1.896552e-03

Joint ci ratio: 8.568970e-02	ci left: 1.708945e-03	ci right 1.862769e-03	k: 2088	n:1170000
Cons ci ratio: 3.255180e-01	ci left: 1.037970e-04	ci right 1.448989e-04	k: 144	n:1170000
KS ci ratio: 1.693079e-02	ci left: 4.343924e-02	ci right 4.418182e-02	k: 51257	n:1170000
CSRNP3   1170000 perm   821 sec   (1425 perm/sec)   p_kst 4.380940e-02   p_cons 1.230769e-04   p_joint 1.784615e-03

Joint ci ratio: 8.538380e-02	ci left: 1.706903e-03	ci right 1.859966e-03	k: 2103	n:1180000
Cons ci ratio: 3.244013e-01	ci left: 1.036957e-04	ci right 1.445873e-04	k: 145	n:1180000
KS ci ratio: 1.685959e-02	ci left: 4.343736e-02	ci right 4.417675e-02	k: 51691	n:1180000
CSRNP3   1180000 perm   833 sec   (1417 perm/sec)   p_kst 4.380593e-02   p_cons 1.228814e-04   p_joint 1.782203e-03

Joint ci ratio: 8.506105e-02	ci left: 1.705718e-03	ci right 1.858068e-03	k: 2119	n:1190000
Cons ci ratio: 3.244015e-01	ci left: 1.028243e-04	ci right 1.433722e-04	k: 145	n:1190000
KS ci ratio: 1.679097e-02	ci left: 4.342714e-02	ci right 4.416332e-02	k: 52115	n:1190000
CSRNP3   1190000 perm   845 sec   (1408 perm/sec)   p_kst 4.379412e-02   p_cons 1.218487e-04   p_joint 1.780672e-03

Joint ci ratio: 8.474194e-02	ci left: 1.704553e-03	ci right 1.856201e-03	k: 2135	n:1200000
Cons ci ratio: 3.232962e-01	ci left: 1.027331e-04	ci right 1.430783e-04	k: 146	n:1200000
KS ci ratio: 1.672136e-02	ci left: 4.342623e-02	ci right 4.415931e-02	k: 52550	n:1200000
CSRNP3   1200000 perm   858 sec   (1399 perm/sec)   p_kst 4.379167e-02   p_cons 1.216667e-04   p_joint 1.779167e-03

Joint ci ratio: 8.134161e-02	ci left: 1.837762e-03	ci right 1.994389e-03	k: 2317	n:1210000
Cons ci ratio: 3.222022e-01	ci left: 1.026435e-04	ci right 1.427890e-04	k: 147	n:1210000
KS ci ratio: 1.664718e-02	ci left: 4.345250e-02	ci right 4.418274e-02	k: 53018	n:1210000
CSRNP3   1210000 perm   870 sec   (1391 perm/sec)   p_kst 4.381653e-02   p_cons 1.214876e-04   p_joint 1.914876e-03

Joint ci ratio: 8.101029e-02	ci left: 1.837956e-03	ci right 1.993932e-03	k: 2336	n:1220000
Cons ci ratio: 3.200469e-01	ci left: 1.033094e-04	ci right 1.433897e-04	k: 149	n:1220000
KS ci ratio: 1.658014e-02	ci left: 4.344733e-02	ci right 4.417451e-02	k: 53448	n:1220000
CSRNP3   1220000 perm   882 sec   (1383 perm/sec)   p_kst 4.380984e-02   p_cons 1.221311e-04   p_joint 1.914754e-03

Joint ci ratio: 8.075169e-02	ci left: 1.834962e-03	ci right 1.990163e-03	k: 2351	n:1230000
Cons ci ratio: 3.200470e-01	ci left: 1.024695e-04	ci right 1.422239e-04	k: 149	n:1230000
KS ci ratio: 1.650957e-02	ci left: 4.346411e-02	ci right 4.418845e-02	k: 53905	n:1230000
CSRNP3   1230000 perm   895 sec   (1374 perm/sec)   p_kst 4.382520e-02   p_cons 1.211382e-04   p_joint 1.911382e-03

Joint ci ratio: 8.044449e-02	ci left: 1.834387e-03	ci right 1.988922e-03	k: 2369	n:1240000
Cons ci ratio: 3.200472e-01	ci left: 1.016431e-04	ci right 1.410769e-04	k: 149	n:1240000
KS ci ratio: 1.644275e-02	ci left: 4.346616e-02	ci right 4.418758e-02	k: 54344	n:1240000
CSRNP3   1240000 perm   907 sec   (1367 perm/sec)   p_kst 4.382581e-02   p_cons 1.201613e-04   p_joint 1.910484e-03

Joint ci ratio: 8.004009e-02	ci left: 1.838527e-03	ci right 1.992595e-03	k: 2393	n:1250000
Cons ci ratio: 3.200473e-01	ci left: 1.008300e-04	ci right 1.399483e-04	k: 149	n:1250000
KS ci ratio: 1.637314e-02	ci left: 4.348652e-02	ci right 4.420519e-02	k: 54806	n:1250000
CSRNP3   1250000 perm   920 sec   (1358 perm/sec)   p_kst 4.384480e-02   p_cons 1.192000e-04   p_joint 1.914400e-03

Joint ci ratio: 7.985709e-02	ci left: 1.832491e-03	ci right 1.985686e-03	k: 2404	n:1260000
Cons ci ratio: 3.189858e-01	ci left: 1.007597e-04	ci right 1.396947e-04	k: 150	n:1260000
KS ci ratio: 1.630363e-02	ci left: 4.351052e-02	ci right 4.422650e-02	k: 55273	n:1260000
CSRNP3   1260000 perm   933 sec   (1350 perm/sec)   p_kst 4.386746e-02   p_cons 1.190476e-04   p_joint 1.907937e-03

Joint ci ratio: 7.959287e-02	ci left: 1.830409e-03	ci right 1.982900e-03	k: 2420	n:1270000
Cons ci ratio: 3.189860e-01	ci left: 9.996635e-05	ci right 1.385948e-04	k: 150	n:1270000
KS ci ratio: 1.623927e-02	ci left: 4.351218e-02	ci right 4.422534e-02	k: 55712	n:1270000
CSRNP3   1270000 perm   946 sec   (1342 perm/sec)   p_kst 4.386772e-02   p_cons 1.181102e-04   p_joint 1.905512e-03

Joint ci ratio: 7.936389e-02	ci left: 1.826829e-03	ci right 1.978564e-03	k: 2434	n:1280000
Cons ci ratio: 3.189861e-01	ci left: 9.918536e-05	ci right 1.375120e-04	k: 150	n:1280000
KS ci ratio: 1.617235e-02	ci left: 4.353094e-02	ci right 4.424144e-02	k: 56173	n:1280000
CSRNP3   1280000 perm   959 sec   (1334 perm/sec)   p_kst 4.388516e-02   p_cons 1.171875e-04   p_joint 1.901563e-03

Joint ci ratio: 7.910451e-02	ci left: 1.824825e-03	ci right 1.975875e-03	k: 2450	n:1290000
Cons ci ratio: 3.179351e-01	ci left: 9.912971e-05	ci right 1.372830e-04	k: 151	n:1290000
KS ci ratio: 1.610833e-02	ci left: 4.353860e-02	ci right 4.424639e-02	k: 56620	n:1290000
CSRNP3   1290000 perm   972 sec   (1327 perm/sec)   p_kst 4.389147e-02   p_cons 1.170543e-04   p_joint 1.899225e-03

Joint ci ratio: 7.902438e-02	ci left: 1.814558e-03	ci right 1.964599e-03	k: 2455	n:1300000
Cons ci ratio: 3.168944e-01	ci left: 9.907513e-05	ci right 1.370573e-04	k: 152	n:1300000
KS ci ratio: 1.604786e-02	ci left: 4.353160e-02	ci right 4.423659e-02	k: 57048	n:1300000
CSRNP3   1300000 perm   985 sec   (1319 perm/sec)   p_kst 4.388308e-02   p_cons 1.169231e-04   p_joint 1.888462e-03

Joint ci ratio: 7.897664e-02	ci left: 1.802950e-03	ci right 1.951938e-03	k: 2458	n:1310000
Cons ci ratio: 3.168946e-01	ci left: 9.831883e-05	ci right 1.360110e-04	k: 152	n:1310000
KS ci ratio: 1.598284e-02	ci left: 4.355208e-02	ci right 4.425452e-02	k: 57512	n:1310000
CSRNP3   1310000 perm   998 sec   (1312 perm/sec)   p_kst 4.390229e-02   p_cons 1.160305e-04   p_joint 1.876336e-03

Joint ci ratio: 7.881680e-02	ci left: 1.796718e-03	ci right 1.944876e-03	k: 2468	n:1320000
Cons ci ratio: 3.158641e-01	ci left: 9.827142e-05	ci right 1.357982e-04	k: 153	n:1320000
KS ci ratio: 1.592492e-02	ci left: 4.353905e-02	ci right 4.423871e-02	k: 57932	n:1320000
CSRNP3   1320000 perm   1012 sec   (1305 perm/sec)   p_kst 4.388788e-02   p_cons 1.159091e-04   p_joint 1.869697e-03

Joint ci ratio: 7.849947e-02	ci left: 1.797950e-03	ci right 1.945586e-03	k: 2488	n:1330000
Cons ci ratio: 3.148435e-01	ci left: 9.822491e-05	ci right 1.355883e-04	k: 154	n:1330000
KS ci ratio: 1.586648e-02	ci left: 4.353221e-02	ci right 4.422917e-02	k: 58360	n:1330000
CSRNP3   1330000 perm   1025 sec   (1298 perm/sec)   p_kst 4.387970e-02   p_cons 1.157895e-04   p_joint 1.870677e-03

Joint ci ratio: 7.846844e-02	ci left: 1.785996e-03	ci right 1.932589e-03	k: 2490	n:1340000
Cons ci ratio: 3.138328e-01	ci left: 9.817929e-05	ci right 1.353814e-04	k: 155	n:1340000
KS ci ratio: 1.581052e-02	ci left: 4.351582e-02	ci right 4.421004e-02	k: 58775	n:1340000
CSRNP3   1340000 perm   1038 sec   (1291 perm/sec)   p_kst 4.386194e-02   p_cons 1.156716e-04   p_joint 1.858209e-03

Joint ci ratio: 7.826464e-02	ci left: 1.782207e-03	ci right 1.928092e-03	k: 2503	n:1350000
Cons ci ratio: 3.138329e-01	ci left: 9.745203e-05	ci right 1.343786e-04	k: 155	n:1350000
KS ci ratio: 1.574818e-02	ci left: 4.353657e-02	ci right 4.422836e-02	k: 59240	n:1350000
CSRNP3   1350000 perm   1052 sec   (1284 perm/sec)   p_kst 4.388148e-02   p_cons 1.148148e-04   p_joint 1.854074e-03

Joint ci ratio: 7.817140e-02	ci left: 1.773428e-03	ci right 1.918413e-03	k: 2509	n:1360000
Cons ci ratio: 3.128319e-01	ci left: 9.741296e-05	ci right 1.341835e-04	k: 156	n:1360000
KS ci ratio: 1.569222e-02	ci left: 4.352698e-02	ci right 4.421614e-02	k: 59664	n:1360000
CSRNP3   1360000 perm   1065 sec   (1277 perm/sec)   p_kst 4.387059e-02   p_cons 1.147059e-04   p_joint 1.844853e-03

Joint ci ratio: 8.110576e-02	ci left: 1.633138e-03	ci right 1.771902e-03	k: 2331	n:1370000
Cons ci ratio: 3.108581e-01	ci left: 9.804754e-05	ci right 1.347777e-04	k: 158	n:1370000
KS ci ratio: 1.563671e-02	ci left: 4.351827e-02	ci right 4.420483e-02	k: 60089	n:1370000
CSRNP3   1370000 perm   1079 sec   (1270 perm/sec)   p_kst 4.386058e-02   p_cons 1.153285e-04   p_joint 1.701460e-03

Joint ci ratio: 8.076010e-02	ci left: 1.635503e-03	ci right 1.773848e-03	k: 2351	n:1380000
Cons ci ratio: 3.098851e-01	ci left: 9.800526e-05	ci right 1.345820e-04	k: 159	n:1380000
KS ci ratio: 1.557761e-02	ci left: 4.353207e-02	ci right 4.421623e-02	k: 60545	n:1380000
CSRNP3   1380000 perm   1093 sec   (1263 perm/sec)   p_kst 4.387319e-02   p_cons 1.152174e-04   p_joint 1.703623e-03

Joint ci ratio: 8.053795e-02	ci left: 1.632900e-03	ci right 1.770628e-03	k: 2364	n:1390000
Cons ci ratio: 3.089213e-01	ci left: 9.796376e-05	ci right 1.343889e-04	k: 160	n:1390000
KS ci ratio: 1.552290e-02	ci left: 4.352560e-02	ci right 4.420724e-02	k: 60973	n:1390000
CSRNP3   1390000 perm   1107 sec   (1256 perm/sec)   p_kst 4.386547e-02   p_cons 1.151079e-04   p_joint 1.700719e-03

Joint ci ratio: 8.030071e-02	ci left: 1.631036e-03	ci right 1.768182e-03	k: 2378	n:1400000
Cons ci ratio: 3.079664e-01	ci left: 9.792302e-05	ci right 1.341984e-04	k: 161	n:1400000
KS ci ratio: 1.546850e-02	ci left: 4.352066e-02	ci right 4.419980e-02	k: 61403	n:1400000
CSRNP3   1400000 perm   1121 sec   (1249 perm/sec)   p_kst 4.385929e-02   p_cons 1.150000e-04   p_joint 1.698571e-03

Joint ci ratio: 7.996520e-02	ci left: 1.633368e-03	ci right 1.770110e-03	k: 2398	n:1410000
Cons ci ratio: 3.079665e-01	ci left: 9.722853e-05	ci right 1.332466e-04	k: 161	n:1410000
KS ci ratio: 1.541402e-02	ci left: 4.351932e-02	ci right 4.419603e-02	k: 61838	n:1410000
CSRNP3   1410000 perm   1135 sec   (1243 perm/sec)   p_kst 4.385674e-02   p_cons 1.141844e-04   p_joint 1.700709e-03

Joint ci ratio: 7.984907e-02	ci left: 1.626697e-03	ci right 1.762673e-03	k: 2405	n:1420000
Cons ci ratio: 3.070204e-01	ci left: 9.719371e-05	ci right 1.330666e-04	k: 162	n:1420000
KS ci ratio: 1.536166e-02	ci left: 4.350958e-02	ci right 4.418383e-02	k: 62261	n:1420000
CSRNP3   1420000 perm   1149 sec   (1236 perm/sec)   p_kst 4.384577e-02   p_cons 1.140845e-04   p_joint 1.693662e-03

Joint ci ratio: 7.976656e-02	ci left: 1.618747e-03	ci right 1.753913e-03	k: 2410	n:1430000
Cons ci ratio: 3.070205e-01	ci left: 9.651403e-05	ci right 1.321361e-04	k: 162	n:1430000
KS ci ratio: 1.530830e-02	ci left: 4.350835e-02	ci right 4.418021e-02	k: 62696	n:1430000
CSRNP3   1430000 perm   1163 sec   (1229 perm/sec)   p_kst 4.384336e-02   p_cons 1.132867e-04   p_joint 1.685315e-03

Joint ci ratio: 7.943768e-02	ci left: 1.621119e-03	ci right 1.755898e-03	k: 2430	n:1440000
Cons ci ratio: 3.070206e-01	ci left: 9.584379e-05	ci right 1.312185e-04	k: 162	n:1440000
KS ci ratio: 1.525523e-02	ci left: 4.350852e-02	ci right 4.417804e-02	k: 63133	n:1440000
CSRNP3   1440000 perm   1178 sec   (1223 perm/sec)   p_kst 4.384236e-02   p_cons 1.125000e-04   p_joint 1.687500e-03

Joint ci ratio: 7.908051e-02	ci left: 1.624810e-03	ci right 1.759261e-03	k: 2452	n:1450000
Cons ci ratio: 3.051541e-01	ci left: 9.645619e-05	ci right 1.317985e-04	k: 164	n:1450000
KS ci ratio: 1.520409e-02	ci left: 4.350114e-02	ci right 4.416827e-02	k: 63559	n:1450000
CSRNP3   1450000 perm   1192 sec   (1216 perm/sec)   p_kst 4.383379e-02   p_cons 1.131034e-04   p_joint 1.691034e-03

Joint ci ratio: 7.876001e-02	ci left: 1.627110e-03	ci right 1.761181e-03	k: 2472	n:1460000
Cons ci ratio: 3.042336e-01	ci left: 9.642811e-05	ci right 1.316329e-04	k: 165	n:1460000
KS ci ratio: 1.515322e-02	ci left: 4.349522e-02	ci right 4.416002e-02	k: 63987	n:1460000
CSRNP3   1460000 perm   1207 sec   (1210 perm/sec)   p_kst 4.382671e-02   p_cons 1.130137e-04   p_joint 1.693151e-03

Joint ci ratio: 7.935735e-02	ci left: 1.591367e-03	ci right 1.723534e-03	k: 2435	n:1470000
Cons ci ratio: 3.033214e-01	ci left: 9.640056e-05	ci right 1.314694e-04	k: 166	n:1470000
KS ci ratio: 1.510383e-02	ci left: 4.348397e-02	ci right 4.414640e-02	k: 64407	n:1470000
CSRNP3   1470000 perm   1221 sec   (1204 perm/sec)   p_kst 4.381429e-02   p_cons 1.129252e-04   p_joint 1.656463e-03

Joint ci ratio: 7.909802e-02	ci left: 1.591212e-03	ci right 1.722913e-03	k: 2451	n:1480000
Cons ci ratio: 3.033215e-01	ci left: 9.574920e-05	ci right 1.305811e-04	k: 166	n:1480000
KS ci ratio: 1.505188e-02	ci left: 4.348970e-02	ci right 4.414993e-02	k: 64852	n:1480000
CSRNP3   1480000 perm   1236 sec   (1198 perm/sec)   p_kst 4.381892e-02   p_cons 1.121622e-04   p_joint 1.656081e-03

Joint ci ratio: 7.882523e-02	ci left: 1.591716e-03	ci right 1.722984e-03	k: 2468	n:1490000
Cons ci ratio: 3.024174e-01	ci left: 9.572674e-05	ci right 1.304267e-04	k: 167	n:1490000
KS ci ratio: 1.499891e-02	ci left: 4.350405e-02	ci right 4.416215e-02	k: 65310	n:1490000
CSRNP3   1490000 perm   1250 sec   (1192 perm/sec)   p_kst 4.383221e-02   p_cons 1.120805e-04   p_joint 1.656376e-03

Joint ci ratio: 7.857107e-02	ci left: 1.591562e-03	ci right 1.722374e-03	k: 2484	n:1500000
Cons ci ratio: 3.006331e-01	ci left: 9.632104e-05	ci right 1.309911e-04	k: 169	n:1500000
KS ci ratio: 1.495113e-02	ci left: 4.349231e-02	ci right 4.414812e-02	k: 65729	n:1500000
CSRNP3   1500000 perm   1264 sec   (1186 perm/sec)   p_kst 4.381933e-02   p_cons 1.126667e-04   p_joint 1.656000e-03

Joint ci ratio: 7.824106e-02	ci left: 1.594656e-03	ci right 1.725148e-03	k: 2505	n:1510000
Cons ci ratio: 2.997528e-01	ci left: 9.629553e-05	ci right 1.308355e-04	k: 170	n:1510000
KS ci ratio: 1.489627e-02	ci left: 4.352296e-02	ci right 4.417680e-02	k: 66212	n:1510000
CSRNP3   1510000 perm   1280 sec   (1180 perm/sec)   p_kst 4.384901e-02   p_cons 1.125828e-04   p_joint 1.658940e-03

Joint ci ratio: 7.551360e-02	ci left: 1.702895e-03	ci right 1.837173e-03	k: 2689	n:1520000
Cons ci ratio: 2.971573e-01	ci left: 9.748795e-05	ci right 1.320958e-04	k: 173	n:1520000
KS ci ratio: 1.485050e-02	ci left: 4.350536e-02	ci right 4.415691e-02	k: 66622	n:1520000
CSRNP3   1520000 perm   1295 sec   (1174 perm/sec)   p_kst 4.383026e-02   p_cons 1.138158e-04   p_joint 1.769079e-03

Joint ci ratio: 7.562677e-02	ci left: 1.686634e-03	ci right 1.819838e-03	k: 2681	n:1530000
Cons ci ratio: 2.971574e-01	ci left: 9.685076e-05	ci right 1.312324e-04	k: 173	n:1530000
KS ci ratio: 1.480135e-02	ci left: 4.350948e-02	ci right 4.415892e-02	k: 67065	n:1530000
CSRNP3   1530000 perm   1310 sec   (1168 perm/sec)   p_kst 4.383333e-02   p_cons 1.130719e-04   p_joint 1.752288e-03

Joint ci ratio: 7.533234e-02	ci left: 1.689061e-03	ci right 1.821915e-03	k: 2702	n:1540000
Cons ci ratio: 2.963072e-01	ci left: 9.682288e-05	ci right 1.310778e-04	k: 174	n:1540000
KS ci ratio: 1.475600e-02	ci left: 4.349478e-02	ci right 4.414200e-02	k: 67479	n:1540000
CSRNP3   1540000 perm   1325 sec   (1162 perm/sec)   p_kst 4.381753e-02   p_cons 1.129870e-04   p_joint 1.754545e-03

Joint ci ratio: 7.505511e-02	ci left: 1.690825e-03	ci right 1.823306e-03	k: 2722	n:1550000
Cons ci ratio: 2.954642e-01	ci left: 9.679550e-05	ci right 1.309251e-04	k: 175	n:1550000
KS ci ratio: 1.470755e-02	ci left: 4.350021e-02	ci right 4.414536e-02	k: 67924	n:1550000
CSRNP3   1550000 perm   1340 sec   (1156 perm/sec)   p_kst 4.382194e-02   p_cons 1.129032e-04   p_joint 1.756129e-03

Joint ci ratio: 7.480826e-02	ci left: 1.691308e-03	ci right 1.823373e-03	k: 2740	n:1560000
Cons ci ratio: 2.937996e-01	ci left: 9.736233e-05	ci right 1.314623e-04	k: 177	n:1560000
KS ci ratio: 1.466204e-02	ci left: 4.349152e-02	ci right 4.413453e-02	k: 68347	n:1560000
CSRNP3   1560000 perm   1355 sec   (1151 perm/sec)   p_kst 4.381218e-02   p_cons 1.134615e-04   p_joint 1.756410e-03

Joint ci ratio: 7.460446e-02	ci left: 1.689911e-03	ci right 1.821492e-03	k: 2755	n:1570000
Cons ci ratio: 2.921627e-01	ci left: 9.792246e-05	ci right 1.319922e-04	k: 179	n:1570000
KS ci ratio: 1.461496e-02	ci left: 4.349437e-02	ci right 4.413534e-02	k: 68788	n:1570000
CSRNP3   1570000 perm   1371 sec   (1146 perm/sec)   p_kst 4.381401e-02   p_cons 1.140127e-04   p_joint 1.754777e-03

Joint ci ratio: 7.390965e-02	ci left: 1.711517e-03	ci right 1.843485e-03	k: 2807	n:1580000
Cons ci ratio: 2.913545e-01	ci left: 9.788930e-05	ci right 1.318359e-04	k: 180	n:1580000
KS ci ratio: 1.456854e-02	ci left: 4.349592e-02	ci right 4.413486e-02	k: 69227	n:1580000
CSRNP3   1580000 perm   1386 sec   (1140 perm/sec)   p_kst 4.381456e-02   p_cons 1.139241e-04   p_joint 1.776582e-03

Joint ci ratio: 7.372617e-02	ci left: 1.709395e-03	ci right 1.840858e-03	k: 2821	n:1590000
Cons ci ratio: 2.905530e-01	ci left: 9.785668e-05	ci right 1.316815e-04	k: 181	n:1590000
KS ci ratio: 1.452332e-02	ci left: 4.349307e-02	ci right 4.412997e-02	k: 69659	n:1590000
CSRNP3   1590000 perm   1401 sec   (1135 perm/sec)   p_kst 4.381069e-02   p_cons 1.138365e-04   p_joint 1.774214e-03

Joint ci ratio: 7.344036e-02	ci left: 1.712208e-03	ci right 1.843356e-03	k: 2843	n:1600000
Cons ci ratio: 2.897581e-01	ci left: 9.782459e-05	ci right 1.315288e-04	k: 182	n:1600000
KS ci ratio: 1.447734e-02	ci left: 4.349711e-02	ci right 4.413204e-02	k: 70102	n:1600000
CSRNP3   1600000 perm   1417 sec   (1129 perm/sec)   p_kst 4.381375e-02   p_cons 1.137500e-04   p_joint 1.776875e-03

Joint ci ratio: 7.319624e-02	ci left: 1.713158e-03	ci right 1.843924e-03	k: 2862	n:1610000
Cons ci ratio: 2.881875e-01	ci left: 9.836920e-05	ci right 1.320439e-04	k: 184	n:1610000
KS ci ratio: 1.443318e-02	ci left: 4.349306e-02	ci right 4.412597e-02	k: 70532	n:1610000
CSRNP3   1610000 perm   1433 sec   (1124 perm/sec)   p_kst 4.380870e-02   p_cons 1.142857e-04   p_joint 1.777640e-03

Joint ci ratio: 7.295453e-02	ci left: 1.714097e-03	ci right 1.844484e-03	k: 2881	n:1620000
Cons ci ratio: 2.874118e-01	ci left: 9.833471e-05	ci right 1.318905e-04	k: 185	n:1620000
KS ci ratio: 1.438995e-02	ci left: 4.348598e-02	ci right 4.411688e-02	k: 70957	n:1620000
CSRNP3   1620000 perm   1448 sec   (1118 perm/sec)   p_kst 4.380062e-02   p_cons 1.141975e-04   p_joint 1.778395e-03

Joint ci ratio: 7.275290e-02	ci left: 1.713219e-03	ci right 1.843163e-03	k: 2897	n:1630000
Cons ci ratio: 2.874119e-01	ci left: 9.773143e-05	ci right 1.310814e-04	k: 185	n:1630000
KS ci ratio: 1.434333e-02	ci left: 4.350101e-02	ci right 4.413006e-02	k: 71418	n:1630000
CSRNP3   1630000 perm   1464 sec   (1113 perm/sec)   p_kst 4.381472e-02   p_cons 1.134969e-04   p_joint 1.777301e-03

Joint ci ratio: 7.252801e-02	ci left: 1.713548e-03	ci right 1.843099e-03	k: 2915	n:1640000
Cons ci ratio: 2.874120e-01	ci left: 9.713550e-05	ci right 1.302821e-04	k: 185	n:1640000
KS ci ratio: 1.429778e-02	ci left: 4.351220e-02	ci right 4.413941e-02	k: 71873	n:1640000
CSRNP3   1640000 perm   1480 sec   (1108 perm/sec)   p_kst 4.382500e-02   p_cons 1.128049e-04   p_joint 1.777439e-03

Joint ci ratio: 7.235461e-02	ci left: 1.711494e-03	ci right 1.840567e-03	k: 2929	n:1650000
Cons ci ratio: 2.858790e-01	ci left: 9.767179e-05	ci right 1.307915e-04	k: 187	n:1650000
KS ci ratio: 1.425173e-02	ci left: 4.352870e-02	ci right 4.415411e-02	k: 72337	n:1650000
CSRNP3   1650000 perm   1497 sec   (1102 perm/sec)   p_kst 4.384061e-02   p_cons 1.133333e-04   p_joint 1.775152e-03

Joint ci ratio: 7.209663e-02	ci left: 1.713606e-03	ci right 1.842359e-03	k: 2950	n:1660000
Cons ci ratio: 2.843703e-01	ci left: 9.820209e-05	ci right 1.312944e-04	k: 189	n:1660000
KS ci ratio: 1.420664e-02	ci left: 4.354201e-02	ci right 4.416561e-02	k: 72796	n:1660000
CSRNP3   1660000 perm   1513 sec   (1097 perm/sec)   p_kst 4.385301e-02   p_cons 1.138554e-04   p_joint 1.777108e-03

Joint ci ratio: 7.180510e-02	ci left: 1.717458e-03	ci right 1.845956e-03	k: 2974	n:1670000
Cons ci ratio: 2.828853e-01	ci left: 9.872648e-05	ci right 1.317907e-04	k: 191	n:1670000
KS ci ratio: 1.416248e-02	ci left: 4.355217e-02	ci right 4.417396e-02	k: 73250	n:1670000
CSRNP3   1670000 perm   1529 sec   (1092 perm/sec)   p_kst 4.386228e-02   p_cons 1.143713e-04   p_joint 1.780838e-03

Joint ci ratio: 7.158885e-02	ci left: 1.717757e-03	ci right 1.845875e-03	k: 2992	n:1680000
Cons ci ratio: 2.821515e-01	ci left: 9.869189e-05	ci right 1.316436e-04	k: 192	n:1680000
KS ci ratio: 1.411832e-02	ci left: 4.356459e-02	ci right 4.418460e-02	k: 73708	n:1680000
CSRNP3   1680000 perm   1545 sec   (1087 perm/sec)   p_kst 4.387381e-02   p_cons 1.142857e-04   p_joint 1.780952e-03

Joint ci ratio: 7.145780e-02	ci left: 1.713985e-03	ci right 1.841578e-03	k: 3003	n:1690000
Cons ci ratio: 2.821516e-01	ci left: 9.810791e-05	ci right 1.308646e-04	k: 192	n:1690000
KS ci ratio: 1.407964e-02	ci left: 4.354679e-02	ci right 4.416484e-02	k: 74115	n:1690000
CSRNP3   1690000 perm   1562 sec   (1082 perm/sec)   p_kst 4.385503e-02   p_cons 1.136095e-04   p_joint 1.776923e-03

Joint ci ratio: 7.132747e-02	ci left: 1.710258e-03	ci right 1.837331e-03	k: 3014	n:1700000
Cons ci ratio: 2.814235e-01	ci left: 9.807748e-05	ci right 1.307245e-04	k: 193	n:1700000
KS ci ratio: 1.403911e-02	ci left: 4.354209e-02	ci right 4.415828e-02	k: 74544	n:1700000
CSRNP3   1700000 perm   1578 sec   (1077 perm/sec)   p_kst 4.384941e-02   p_cons 1.135294e-04   p_joint 1.772941e-03

Joint ci ratio: 7.109202e-02	ci left: 1.711744e-03	ci right 1.838491e-03	k: 3034	n:1710000
Cons ci ratio: 2.814236e-01	ci left: 9.750392e-05	ci right 1.299601e-04	k: 193	n:1710000
KS ci ratio: 1.399571e-02	ci left: 4.355669e-02	ci right 4.417117e-02	k: 75006	n:1710000
CSRNP3   1710000 perm   1594 sec   (1073 perm/sec)   p_kst 4.386316e-02   p_cons 1.128655e-04   p_joint 1.774269e-03

Joint ci ratio: 7.089376e-02	ci left: 1.711501e-03	ci right 1.837861e-03	k: 3051	n:1720000
Cons ci ratio: 2.814236e-01	ci left: 9.693703e-05	ci right 1.292045e-04	k: 193	n:1720000
KS ci ratio: 1.395425e-02	ci left: 4.356185e-02	ci right 4.417457e-02	k: 75452	n:1720000
CSRNP3   1720000 perm   1611 sec   (1068 perm/sec)   p_kst 4.386744e-02   p_cons 1.122093e-04   p_joint 1.773837e-03

Joint ci ratio: 7.069716e-02	ci left: 1.711260e-03	ci right 1.837238e-03	k: 3068	n:1730000
Cons ci ratio: 2.807011e-01	ci left: 9.691400e-05	ci right 1.290763e-04	k: 194	n:1730000
KS ci ratio: 1.391125e-02	ci left: 4.357848e-02	ci right 4.418952e-02	k: 75918	n:1730000
CSRNP3   1730000 perm   1627 sec   (1063 perm/sec)   p_kst 4.388324e-02   p_cons 1.121387e-04   p_joint 1.773410e-03

Joint ci ratio: 7.054799e-02	ci left: 1.708765e-03	ci right 1.834282e-03	k: 3081	n:1740000
Cons ci ratio: 2.807012e-01	ci left: 9.635702e-05	ci right 1.283345e-04	k: 194	n:1740000
KS ci ratio: 1.387177e-02	ci left: 4.357601e-02	ci right 4.418527e-02	k: 76351	n:1740000
CSRNP3   1740000 perm   1644 sec   (1058 perm/sec)   p_kst 4.387989e-02   p_cons 1.114943e-04   p_joint 1.770690e-03

Joint ci ratio: 7.034287e-02	ci left: 1.709105e-03	ci right 1.834268e-03	k: 3099	n:1750000
Cons ci ratio: 2.771699e-01	ci left: 9.846375e-05	ci right 1.306576e-04	k: 199	n:1750000
KS ci ratio: 1.383178e-02	ci left: 4.357871e-02	ci right 4.418623e-02	k: 76793	n:1750000
CSRNP3   1750000 perm   1661 sec   (1054 perm/sec)   p_kst 4.388171e-02   p_cons 1.137143e-04   p_joint 1.770857e-03

Joint ci ratio: 7.013953e-02	ci left: 1.709442e-03	ci right 1.834252e-03	k: 3117	n:1760000
Cons ci ratio: 2.757943e-01	ci left: 9.896189e-05	ci right 1.311302e-04	k: 201	n:1760000
KS ci ratio: 1.379418e-02	ci left: 4.356891e-02	ci right 4.417464e-02	k: 77213	n:1760000
CSRNP3   1760000 perm   1678 sec   (1049 perm/sec)   p_kst 4.387102e-02   p_cons 1.142045e-04   p_joint 1.771023e-03

Joint ci ratio: 6.987101e-02	ci left: 1.713106e-03	ci right 1.837686e-03	k: 3141	n:1770000
Cons ci ratio: 2.757944e-01	ci left: 9.840278e-05	ci right 1.303893e-04	k: 201	n:1770000
KS ci ratio: 1.375116e-02	ci left: 4.359414e-02	ci right 4.419831e-02	k: 77695	n:1770000
CSRNP3   1770000 perm   1694 sec   (1045 perm/sec)   p_kst 4.389548e-02   p_cons 1.135593e-04   p_joint 1.774576e-03

Joint ci ratio: 6.970488e-02	ci left: 1.711761e-03	ci right 1.835936e-03	k: 3156	n:1780000
Cons ci ratio: 2.757945e-01	ci left: 9.784995e-05	ci right 1.296568e-04	k: 201	n:1780000
KS ci ratio: 1.371394e-02	ci left: 4.358605e-02	ci right 4.418847e-02	k: 78118	n:1780000
CSRNP3   1780000 perm   1711 sec   (1040 perm/sec)   p_kst 4.388652e-02   p_cons 1.129213e-04   p_joint 1.773034e-03

Joint ci ratio: 6.963896e-02	ci left: 1.705492e-03	ci right 1.829090e-03	k: 3162	n:1790000
Cons ci ratio: 2.744392e-01	ci left: 9.834355e-05	ci right 1.301267e-04	k: 203	n:1790000
KS ci ratio: 1.367366e-02	ci left: 4.359866e-02	ci right 4.419946e-02	k: 78578	n:1790000
CSRNP3   1790000 perm   1728 sec   (1036 perm/sec)   p_kst 4.389832e-02   p_cons 1.134078e-04   p_joint 1.766480e-03

Joint ci ratio: 6.947448e-02	ci left: 1.704205e-03	ci right 1.827407e-03	k: 3177	n:1800000
Cons ci ratio: 2.731036e-01	ci left: 9.883205e-05	ci right 1.305909e-04	k: 205	n:1800000
KS ci ratio: 1.363706e-02	ci left: 4.359064e-02	ci right 4.418971e-02	k: 79001	n:1800000
CSRNP3   1800000 perm   1745 sec   (1032 perm/sec)   p_kst 4.388944e-02   p_cons 1.138889e-04   p_joint 1.765000e-03

Joint ci ratio: 6.194315e-02	ci left: 2.139336e-03	ci right 2.276629e-03	k: 3995	n:1810000
Cons ci ratio: 2.704899e-01	ci left: 1.003454e-04	ci right 1.322296e-04	k: 209	n:1810000
KS ci ratio: 1.359790e-02	ci left: 4.360034e-02	ci right 4.419781e-02	k: 79456	n:1810000
CSRNP3   1810000 perm   1762 sec   (1027 perm/sec)   p_kst 4.389834e-02   p_cons 1.154696e-04   p_joint 2.207182e-03

Joint ci ratio: 6.149784e-02	ci left: 2.158959e-03	ci right 2.296479e-03	k: 4053	n:1820000
Cons ci ratio: 2.692110e-01	ci left: 1.008186e-04	ci right 1.326761e-04	k: 211	n:1820000
KS ci ratio: 1.355809e-02	ci left: 4.361595e-02	ci right 4.421187e-02	k: 79922	n:1820000
CSRNP3   1820000 perm   1780 sec   (1023 perm/sec)   p_kst 4.391319e-02   p_cons 1.159341e-04   p_joint 2.226923e-03

Joint ci ratio: 6.124888e-02	ci left: 2.164917e-03	ci right 2.302239e-03	k: 4086	n:1830000
Cons ci ratio: 2.685783e-01	ci left: 1.007773e-04	ci right 1.325343e-04	k: 212	n:1830000
KS ci ratio: 1.351960e-02	ci left: 4.362541e-02	ci right 4.421975e-02	k: 80377	n:1830000
CSRNP3   1830000 perm   1797 sec   (1018 perm/sec)   p_kst 4.392186e-02   p_cons 1.158470e-04   p_joint 2.232787e-03

Joint ci ratio: 6.109215e-02	ci left: 2.164390e-03	ci right 2.301315e-03	k: 4107	n:1840000
Cons ci ratio: 2.673261e-01	ci left: 1.012435e-04	ci right 1.329738e-04	k: 214	n:1840000
KS ci ratio: 1.348772e-02	ci left: 4.359576e-02	ci right 4.418829e-02	k: 80760	n:1840000
CSRNP3   1840000 perm   1814 sec   (1014 perm/sec)   p_kst 4.389130e-02   p_cons 1.163043e-04   p_joint 2.232065e-03

Joint ci ratio: 6.090705e-02	ci left: 2.165998e-03	ci right 2.302595e-03	k: 4132	n:1850000
Cons ci ratio: 2.667066e-01	ci left: 1.012006e-04	ci right 1.328317e-04	k: 215	n:1850000
KS ci ratio: 1.345043e-02	ci left: 4.360145e-02	ci right 4.419241e-02	k: 81208	n:1850000
CSRNP3   1850000 perm   1832 sec   (1010 perm/sec)   p_kst 4.389622e-02   p_cons 1.162162e-04   p_joint 2.233514e-03

Joint ci ratio: 6.070169e-02	ci left: 2.169178e-03	ci right 2.305498e-03	k: 4160	n:1860000
Cons ci ratio: 2.660913e-01	ci left: 1.011583e-04	ci right 1.326910e-04	k: 216	n:1860000
KS ci ratio: 1.341362e-02	ci left: 4.360602e-02	ci right 4.419541e-02	k: 81654	n:1860000
CSRNP3   1860000 perm   1849 sec   (1006 perm/sec)   p_kst 4.390000e-02   p_cons 1.161290e-04   p_joint 2.236559e-03

Joint ci ratio: 6.058542e-02	ci left: 2.166004e-03	ci right 2.301855e-03	k: 4176	n:1870000
Cons ci ratio: 2.654804e-01	ci left: 1.011165e-04	ci right 1.325517e-04	k: 217	n:1870000
KS ci ratio: 1.338027e-02	ci left: 4.359081e-02	ci right 4.417852e-02	k: 82063	n:1870000
CSRNP3   1870000 perm   1867 sec   (1001 perm/sec)   p_kst 4.388396e-02   p_cons 1.160428e-04   p_joint 2.233155e-03

Joint ci ratio: 6.042650e-02	ci left: 2.166008e-03	ci right 2.301490e-03	k: 4198	n:1880000
Cons ci ratio: 2.648736e-01	ci left: 1.010752e-04	ci right 1.324138e-04	k: 218	n:1880000
KS ci ratio: 1.334411e-02	ci left: 4.359486e-02	ci right 4.418102e-02	k: 82508	n:1880000
CSRNP3   1880000 perm   1885 sec   (997 perm/sec)   p_kst 4.388723e-02   p_cons 1.159574e-04   p_joint 2.232979e-03

Joint ci ratio: 6.031181e-02	ci left: 2.162886e-03	ci right 2.297906e-03	k: 4214	n:1890000
Cons ci ratio: 2.642709e-01	ci left: 1.010344e-04	ci right 1.322773e-04	k: 219	n:1890000
KS ci ratio: 1.330859e-02	ci left: 4.359675e-02	ci right 4.418137e-02	k: 82949	n:1890000
CSRNP3   1890000 perm   1903 sec   (993 perm/sec)   p_kst 4.388836e-02   p_cons 1.158730e-04   p_joint 2.229630e-03

Joint ci ratio: 6.014792e-02	ci left: 2.163425e-03	ci right 2.298100e-03	k: 4237	n:1900000
Cons ci ratio: 2.624871e-01	ci left: 1.019773e-04	ci right 1.332641e-04	k: 222	n:1900000
KS ci ratio: 1.327376e-02	ci left: 4.359601e-02	ci right 4.417907e-02	k: 83385	n:1900000
CSRNP3   1900000 perm   1922 sec   (989 perm/sec)   p_kst 4.388684e-02   p_cons 1.168421e-04   p_joint 2.230000e-03

Joint ci ratio: 6.002066e-02	ci left: 2.161380e-03	ci right 2.295633e-03	k: 4255	n:1910000
Cons ci ratio: 2.619006e-01	ci left: 1.019326e-04	ci right 1.331243e-04	k: 223	n:1910000
KS ci ratio: 1.323755e-02	ci left: 4.360571e-02	ci right 4.418730e-02	k: 83841	n:1910000
CSRNP3   1910000 perm   1940 sec   (984 perm/sec)   p_kst 4.389581e-02   p_cons 1.167539e-04   p_joint 2.227749e-03

Joint ci ratio: 5.988718e-02	ci left: 2.159871e-03	ci right 2.293721e-03	k: 4274	n:1920000
Cons ci ratio: 2.607391e-01	ci left: 1.023751e-04	ci right 1.335406e-04	k: 225	n:1920000
KS ci ratio: 1.320049e-02	ci left: 4.362258e-02	ci right 4.420275e-02	k: 84311	n:1920000
CSRNP3   1920000 perm   1958 sec   (981 perm/sec)   p_kst 4.391198e-02   p_cons 1.171875e-04   p_joint 2.226042e-03

Joint ci ratio: 5.976854e-02	ci left: 2.157356e-03	ci right 2.290777e-03	k: 4291	n:1930000
Cons ci ratio: 2.601642e-01	ci left: 1.023290e-04	ci right 1.334006e-04	k: 226	n:1930000
KS ci ratio: 1.316748e-02	ci left: 4.361552e-02	ci right 4.419414e-02	k: 84735	n:1930000
CSRNP3   1930000 perm   1977 sec   (976 perm/sec)   p_kst 4.390415e-02   p_cons 1.170984e-04   p_joint 2.223316e-03

Joint ci ratio: 5.958136e-02	ci left: 2.159946e-03	ci right 2.293094e-03	k: 4318	n:1940000
Cons ci ratio: 2.595930e-01	ci left: 1.022834e-04	ci right 1.332619e-04	k: 227	n:1940000
KS ci ratio: 1.313544e-02	ci left: 4.360391e-02	ci right 4.418096e-02	k: 85150	n:1940000
CSRNP3   1940000 perm   1995 sec   (972 perm/sec)   p_kst 4.389175e-02   p_cons 1.170103e-04   p_joint 2.225773e-03

Joint ci ratio: 5.528296e-02	ci left: 2.500685e-03	ci right 2.643362e-03	k: 5014	n:1950000
Cons ci ratio: 2.584618e-01	ci left: 1.027179e-04	ci right 1.336706e-04	k: 229	n:1950000
KS ci ratio: 1.310123e-02	ci left: 4.360776e-02	ci right 4.418334e-02	k: 85595	n:1950000
CSRNP3   1950000 perm   2015 sec   (968 perm/sec)   p_kst 4.389487e-02   p_cons 1.174359e-04   p_joint 2.571282e-03

Joint ci ratio: 5.517314e-02	ci left: 2.497990e-03	ci right 2.640221e-03	k: 5034	n:1960000
Cons ci ratio: 2.579018e-01	ci left: 1.026711e-04	ci right 1.335318e-04	k: 230	n:1960000
KS ci ratio: 1.306966e-02	ci left: 4.359631e-02	ci right 4.417035e-02	k: 86010	n:1960000
CSRNP3   1960000 perm   2034 sec   (964 perm/sec)   p_kst 4.388265e-02   p_cons 1.173469e-04   p_joint 2.568367e-03

Joint ci ratio: 5.503668e-02	ci left: 2.497825e-03	ci right 2.639684e-03	k: 5059	n:1970000
Cons ci ratio: 2.579019e-01	ci left: 1.021499e-04	ci right 1.328540e-04	k: 230	n:1970000
KS ci ratio: 1.303707e-02	ci left: 4.359308e-02	ci right 4.416563e-02	k: 86441	n:1970000
CSRNP3   1970000 perm   2052 sec   (960 perm/sec)   p_kst 4.387868e-02   p_cons 1.167513e-04   p_joint 2.568020e-03

Joint ci ratio: 5.486339e-02	ci left: 2.501150e-03	ci right 2.642736e-03	k: 5091	n:1980000
Cons ci ratio: 2.567926e-01	ci left: 1.025789e-04	ci right 1.332581e-04	k: 232	n:1980000
KS ci ratio: 1.300229e-02	ci left: 4.360548e-02	ci right 4.417666e-02	k: 86903	n:1980000
CSRNP3   1980000 perm   2071 sec   (956 perm/sec)   p_kst 4.389040e-02   p_cons 1.171717e-04   p_joint 2.571212e-03

Joint ci ratio: 5.470777e-02	ci left: 2.502954e-03	ci right 2.644228e-03	k: 5120	n:1990000
Cons ci ratio: 2.551551e-01	ci left: 1.034743e-04	ci right 1.341925e-04	k: 235	n:1990000
KS ci ratio: 1.297058e-02	ci left: 4.359974e-02	ci right 4.416943e-02	k: 87329	n:1990000
CSRNP3   1990000 perm   2089 sec   (952 perm/sec)   p_kst 4.388392e-02   p_cons 1.180905e-04   p_joint 2.572864e-03

Joint ci ratio: 5.460134e-02	ci left: 2.500303e-03	ci right 2.641144e-03	k: 5140	n:2000000
Cons ci ratio: 2.540807e-01	ci left: 1.038931e-04	ci right 1.345852e-04	k: 237	n:2000000
KS ci ratio: 1.293949e-02	ci left: 4.359155e-02	ci right 4.415977e-02	k: 87750	n:2000000
CSRNP3   2000000 perm   2109 sec   (948 perm/sec)   p_kst 4.387500e-02   p_cons 1.185000e-04   p_joint 2.570000e-03

Joint ci ratio: 5.447964e-02	ci left: 2.499150e-03	ci right 2.639603e-03	k: 5163	n:2010000
Cons ci ratio: 2.540808e-01	ci left: 1.033762e-04	ci right 1.339156e-04	k: 237	n:2010000
KS ci ratio: 1.290801e-02	ci left: 4.358742e-02	ci right 4.415419e-02	k: 88179	n:2010000
CSRNP3   2010000 perm   2128 sec   (945 perm/sec)   p_kst 4.387015e-02   p_cons 1.179104e-04   p_joint 2.568657e-03

Joint ci ratio: 5.439031e-02	ci left: 2.495079e-03	ci right 2.635066e-03	k: 5180	n:2020000
Cons ci ratio: 2.540808e-01	ci left: 1.028645e-04	ci right 1.332527e-04	k: 237	n:2020000
KS ci ratio: 1.287493e-02	ci left: 4.359518e-02	ci right 4.416058e-02	k: 88632	n:2020000
CSRNP3   2020000 perm   2147 sec   (941 perm/sec)   p_kst 4.387723e-02   p_cons 1.173267e-04   p_joint 2.564356e-03

Joint ci ratio: 5.429094e-02	ci left: 2.492021e-03	ci right 2.631572e-03	k: 5199	n:2030000
Cons ci ratio: 2.530199e-01	ci left: 1.032804e-04	ci right 1.336440e-04	k: 239	n:2030000
KS ci ratio: 1.284301e-02	ci left: 4.359697e-02	ci right 4.416098e-02	k: 89073	n:2030000
CSRNP3   2030000 perm   2167 sec   (937 perm/sec)   p_kst 4.387833e-02   p_cons 1.177340e-04   p_joint 2.561084e-03

Joint ci ratio: 5.422337e-02	ci left: 2.486091e-03	ci right 2.625131e-03	k: 5212	n:2040000
Cons ci ratio: 2.519721e-01	ci left: 1.036924e-04	ci right 1.340311e-04	k: 241	n:2040000
KS ci ratio: 1.281006e-02	ci left: 4.360705e-02	ci right 4.416974e-02	k: 89531	n:2040000
CSRNP3   2040000 perm   2186 sec   (933 perm/sec)   p_kst 4.388775e-02   p_cons 1.181373e-04   p_joint 2.554902e-03

Joint ci ratio: 5.252363e-02	ci left: 2.638572e-03	ci right 2.781375e-03	k: 5554	n:2050000
Cons ci ratio: 2.509373e-01	ci left: 1.041008e-04	ci right 1.344143e-04	k: 243	n:2050000
KS ci ratio: 1.277944e-02	ci left: 4.360342e-02	ci right 4.416470e-02	k: 89961	n:2050000
CSRNP3   2050000 perm   2205 sec   (930 perm/sec)   p_kst 4.388341e-02   p_cons 1.185366e-04   p_joint 2.709268e-03

Joint ci ratio: 5.235884e-02	ci left: 2.642531e-03	ci right 2.785086e-03	k: 5589	n:2060000
Cons ci ratio: 2.509374e-01	ci left: 1.035954e-04	ci right 1.337618e-04	k: 243	n:2060000
KS ci ratio: 1.274815e-02	ci left: 4.360563e-02	ci right 4.416556e-02	k: 90403	n:2060000
CSRNP3   2060000 perm   2224 sec   (926 perm/sec)   p_kst 4.388495e-02   p_cons 1.179612e-04   p_joint 2.713107e-03

Joint ci ratio: 5.220955e-02	ci left: 2.645022e-03	ci right 2.787292e-03	k: 5621	n:2070000
Cons ci ratio: 2.504247e-01	ci left: 1.035477e-04	ci right 1.336290e-04	k: 244	n:2070000
KS ci ratio: 1.271863e-02	ci left: 4.359771e-02	ci right 4.415623e-02	k: 90824	n:2070000
CSRNP3   2070000 perm   2244 sec   (923 perm/sec)   p_kst 4.387633e-02   p_cons 1.178744e-04   p_joint 2.715459e-03

Joint ci ratio: 5.207077e-02	ci left: 2.646541e-03	ci right 2.788503e-03	k: 5651	n:2080000
Cons ci ratio: 2.494088e-01	ci left: 1.039512e-04	ci right 1.340082e-04	k: 246	n:2080000
KS ci ratio: 1.268858e-02	ci left: 4.359465e-02	ci right 4.415181e-02	k: 91255	n:2080000
CSRNP3   2080000 perm   2264 sec   (919 perm/sec)   p_kst 4.387260e-02   p_cons 1.182692e-04   p_joint 2.716827e-03

Joint ci ratio: 5.191935e-02	ci left: 2.649462e-03	ci right 2.791155e-03	k: 5684	n:2090000
Cons ci ratio: 2.494088e-01	ci left: 1.034538e-04	ci right 1.333670e-04	k: 246	n:2090000
KS ci ratio: 1.265745e-02	ci left: 4.360022e-02	ci right 4.415607e-02	k: 91704	n:2090000
CSRNP3   2090000 perm   2284 sec   (915 perm/sec)   p_kst 4.387751e-02   p_cons 1.177033e-04   p_joint 2.719617e-03

Joint ci ratio: 5.178741e-02	ci left: 2.650476e-03	ci right 2.791853e-03	k: 5713	n:2100000
Cons ci ratio: 2.494089e-01	ci left: 1.029612e-04	ci right 1.327319e-04	k: 246	n:2100000
KS ci ratio: 1.262955e-02	ci left: 4.358579e-02	ci right 4.414023e-02	k: 92111	n:2100000
CSRNP3   2100000 perm   2304 sec   (911 perm/sec)   p_kst 4.386238e-02   p_cons 1.171429e-04   p_joint 2.720476e-03

Joint ci ratio: 5.167903e-02	ci left: 2.649142e-03	ci right 2.790143e-03	k: 5737	n:2110000
Cons ci ratio: 2.489056e-01	ci left: 1.029176e-04	ci right 1.326063e-04	k: 247	n:2110000
KS ci ratio: 1.260184e-02	ci left: 4.357151e-02	ci right 4.412453e-02	k: 92518	n:2110000
CSRNP3   2110000 perm   2324 sec   (908 perm/sec)   p_kst 4.384739e-02   p_cons 1.170616e-04   p_joint 2.718957e-03

Joint ci ratio: 5.156684e-02	ci left: 2.648286e-03	ci right 2.788926e-03	k: 5762	n:2120000
Cons ci ratio: 2.479079e-01	ci left: 1.033168e-04	ci right 1.329828e-04	k: 249	n:2120000
KS ci ratio: 1.257021e-02	ci left: 4.358463e-02	ci right 4.413643e-02	k: 92983	n:2120000
CSRNP3   2120000 perm   2344 sec   (904 perm/sec)   p_kst 4.385991e-02   p_cons 1.174528e-04   p_joint 2.717925e-03

Joint ci ratio: 5.224418e-02	ci left: 2.567269e-03	ci right 2.705451e-03	k: 5614	n:2130000
Cons ci ratio: 2.469221e-01	ci left: 1.037125e-04	ci right 1.333555e-04	k: 251	n:2130000
KS ci ratio: 1.254155e-02	ci left: 4.357938e-02	ci right 4.412984e-02	k: 93409	n:2130000
CSRNP3   2130000 perm   2364 sec   (901 perm/sec)   p_kst 4.385399e-02   p_cons 1.178404e-04   p_joint 2.635681e-03

Joint ci ratio: 5.215146e-02	ci left: 2.564496e-03	ci right 2.702276e-03	k: 5634	n:2140000
Cons ci ratio: 2.469222e-01	ci left: 1.032278e-04	ci right 1.327324e-04	k: 251	n:2140000
KS ci ratio: 1.251539e-02	ci left: 4.355881e-02	ci right 4.410785e-02	k: 93802	n:2140000
CSRNP3   2140000 perm   2385 sec   (897 perm/sec)   p_kst 4.383271e-02   p_cons 1.172897e-04   p_joint 2.632710e-03

Joint ci ratio: 5.199934e-02	ci left: 2.567717e-03	ci right 2.705256e-03	k: 5667	n:2150000
Cons ci ratio: 2.459481e-01	ci left: 1.036205e-04	ci right 1.331026e-04	k: 253	n:2150000
KS ci ratio: 1.248524e-02	ci left: 4.356625e-02	ci right 4.411405e-02	k: 94255	n:2150000
CSRNP3   2150000 perm   2405 sec   (894 perm/sec)   p_kst 4.383953e-02   p_cons 1.176744e-04   p_joint 2.635814e-03

Joint ci ratio: 5.186223e-02	ci left: 2.569538e-03	ci right 2.706801e-03	k: 5697	n:2160000
Cons ci ratio: 2.454654e-01	ci left: 1.035752e-04	ci right 1.329778e-04	k: 254	n:2160000
KS ci ratio: 1.245523e-02	ci left: 4.357408e-02	ci right 4.412066e-02	k: 94709	n:2160000
CSRNP3   2160000 perm   2425 sec   (891 perm/sec)   p_kst 4.384676e-02   p_cons 1.175926e-04   p_joint 2.637500e-03

Joint ci ratio: 5.179878e-02	ci left: 2.564065e-03	ci right 2.700863e-03	k: 5711	n:2170000
Cons ci ratio: 2.454654e-01	ci left: 1.030979e-04	ci right 1.323650e-04	k: 254	n:2170000
KS ci ratio: 1.242728e-02	ci left: 4.356944e-02	ci right 4.411473e-02	k: 95136	n:2170000
CSRNP3   2170000 perm   2444 sec   (888 perm/sec)   p_kst 4.384147e-02   p_cons 1.170507e-04   p_joint 2.631797e-03

Joint ci ratio: 5.166775e-02	ci left: 2.565434e-03	ci right 2.701948e-03	k: 5740	n:2180000
Cons ci ratio: 2.454655e-01	ci left: 1.026250e-04	ci right 1.317578e-04	k: 254	n:2180000
KS ci ratio: 1.240067e-02	ci left: 4.355707e-02	ci right 4.410102e-02	k: 95546	n:2180000
CSRNP3   2180000 perm   2465 sec   (884 perm/sec)   p_kst 4.382844e-02   p_cons 1.165138e-04   p_joint 2.633028e-03

Joint ci ratio: 5.156909e-02	ci left: 2.563635e-03	ci right 2.699786e-03	k: 5762	n:2190000
Cons ci ratio: 2.449856e-01	ci left: 1.025849e-04	ci right 1.316408e-04	k: 255	n:2190000
KS ci ratio: 1.237242e-02	ci left: 4.355710e-02	ci right 4.409981e-02	k: 95983	n:2190000
CSRNP3   2190000 perm   2486 sec   (881 perm/sec)   p_kst 4.382785e-02   p_cons 1.164384e-04   p_joint 2.631050e-03

Joint ci ratio: 5.147099e-02	ci left: 2.561853e-03	ci right 2.697643e-03	k: 5784	n:2200000
Cons ci ratio: 2.445085e-01	ci left: 1.025453e-04	ci right 1.315248e-04	k: 256	n:2200000
KS ci ratio: 1.234408e-02	ci left: 4.355895e-02	ci right 4.410043e-02	k: 96424	n:2200000
CSRNP3   2200000 perm   2506 sec   (878 perm/sec)   p_kst 4.382909e-02   p_cons 1.163636e-04   p_joint 2.629091e-03

Joint ci ratio: 5.136015e-02	ci left: 2.561428e-03	ci right 2.696894e-03	k: 5809	n:2210000
Cons ci ratio: 2.445086e-01	ci left: 1.020813e-04	ci right 1.309297e-04	k: 256	n:2210000
KS ci ratio: 1.231548e-02	ci left: 4.356394e-02	ci right 4.410422e-02	k: 96872	n:2210000
CSRNP3   2210000 perm   2527 sec   (875 perm/sec)   p_kst 4.383348e-02   p_cons 1.158371e-04   p_joint 2.628507e-03

Joint ci ratio: 5.122802e-02	ci left: 2.563230e-03	ci right 2.698433e-03	k: 5839	n:2220000
Cons ci ratio: 2.445087e-01	ci left: 1.016215e-04	ci right 1.303399e-04	k: 256	n:2220000
KS ci ratio: 1.228938e-02	ci left: 4.355317e-02	ci right 4.409216e-02	k: 97285	n:2220000
CSRNP3   2220000 perm   2548 sec   (871 perm/sec)   p_kst 4.382207e-02   p_cons 1.153153e-04   p_joint 2.630180e-03

Joint ci ratio: 5.111874e-02	ci left: 2.562803e-03	ci right 2.697686e-03	k: 5864	n:2230000
Cons ci ratio: 2.445087e-01	ci left: 1.011658e-04	ci right 1.297554e-04	k: 256	n:2230000
KS ci ratio: 1.226306e-02	ci left: 4.354518e-02	ci right 4.408291e-02	k: 97704	n:2230000
CSRNP3   2230000 perm   2568 sec   (868 perm/sec)   p_kst 4.381345e-02   p_cons 1.147982e-04   p_joint 2.629596e-03

Joint ci ratio: 5.099713e-02	ci left: 2.563703e-03	ci right 2.698302e-03	k: 5892	n:2240000
Cons ci ratio: 2.430939e-01	ci left: 1.019716e-04	ci right 1.305971e-04	k: 259	n:2240000
KS ci ratio: 1.223514e-02	ci left: 4.354928e-02	ci right 4.408583e-02	k: 98150	n:2240000
CSRNP3   2240000 perm   2590 sec   (865 perm/sec)   p_kst 4.381696e-02   p_cons 1.156250e-04   p_joint 2.630357e-03

Joint ci ratio: 5.088931e-02	ci left: 2.563278e-03	ci right 2.697563e-03	k: 5917	n:2250000
Cons ci ratio: 2.426278e-01	ci left: 1.019358e-04	ci right 1.304881e-04	k: 260	n:2250000
KS ci ratio: 1.220774e-02	ci left: 4.355113e-02	ci right 4.408649e-02	k: 98591	n:2250000
CSRNP3   2250000 perm   2611 sec   (862 perm/sec)   p_kst 4.381822e-02   p_cons 1.155556e-04   p_joint 2.629778e-03

Joint ci ratio: 5.176971e-02	ci left: 2.465010e-03	ci right 2.596447e-03	k: 5718	n:2260000
Cons ci ratio: 2.421643e-01	ci left: 1.019004e-04	ci right 1.303800e-04	k: 261	n:2260000
KS ci ratio: 1.218110e-02	ci left: 4.354899e-02	ci right 4.408315e-02	k: 99023	n:2260000
CSRNP3   2260000 perm   2632 sec   (859 perm/sec)   p_kst 4.381549e-02   p_cons 1.154867e-04   p_joint 2.530088e-03

Joint ci ratio: 5.164792e-02	ci left: 2.465891e-03	ci right 2.597057e-03	k: 5745	n:2270000
Cons ci ratio: 2.407896e-01	ci left: 1.026931e-04	ci right 1.312071e-04	k: 264	n:2270000
KS ci ratio: 1.215399e-02	ci left: 4.355127e-02	ci right 4.408426e-02	k: 99465	n:2270000
CSRNP3   2270000 perm   2654 sec   (855 perm/sec)   p_kst 4.381718e-02   p_cons 1.162996e-04   p_joint 2.530837e-03

Joint ci ratio: 5.152250e-02	ci left: 2.467198e-03	ci right 2.598105e-03	k: 5773	n:2280000
Cons ci ratio: 2.403365e-01	ci left: 1.026549e-04	ci right 1.310966e-04	k: 265	n:2280000
KS ci ratio: 1.212840e-02	ci left: 4.354434e-02	ci right 4.407612e-02	k: 99886	n:2280000
CSRNP3   2280000 perm   2675 sec   (852 perm/sec)   p_kst 4.380965e-02   p_cons 1.162281e-04   p_joint 2.532018e-03

Joint ci ratio: 5.140689e-02	ci left: 2.467632e-03	ci right 2.598260e-03	k: 5799	n:2290000
Cons ci ratio: 2.403366e-01	ci left: 1.022066e-04	ci right 1.305241e-04	k: 265	n:2290000
KS ci ratio: 1.210196e-02	ci left: 4.354444e-02	ci right 4.407505e-02	k: 100323	n:2290000
CSRNP3   2290000 perm   2697 sec   (849 perm/sec)   p_kst 4.380917e-02   p_cons 1.157205e-04   p_joint 2.532314e-03

Joint ci ratio: 5.129646e-02	ci left: 2.467633e-03	ci right 2.597972e-03	k: 5824	n:2300000
Cons ci ratio: 2.389926e-01	ci left: 1.029882e-04	ci right 1.313391e-04	k: 268	n:2300000
KS ci ratio: 1.207707e-02	ci left: 4.353501e-02	ci right 4.406440e-02	k: 100738	n:2300000
CSRNP3   2300000 perm   2718 sec   (846 perm/sec)   p_kst 4.379913e-02   p_cons 1.165217e-04   p_joint 2.532174e-03

Joint ci ratio: 5.120429e-02	ci left: 2.465925e-03	ci right 2.595933e-03	k: 5845	n:2310000
Cons ci ratio: 2.385496e-01	ci left: 1.029494e-04	ci right 1.312293e-04	k: 269	n:2310000
KS ci ratio: 1.205065e-02	ci left: 4.353731e-02	ci right 4.406557e-02	k: 101180	n:2310000
CSRNP3   2310000 perm   2740 sec   (843 perm/sec)   p_kst 4.380087e-02   p_cons 1.164502e-04   p_joint 2.530303e-03

Joint ci ratio: 5.116948e-02	ci left: 2.458700e-03	ci right 2.588236e-03	k: 5853	n:2320000
Cons ci ratio: 2.376709e-01	ci left: 1.033163e-04	ci right 1.315771e-04	k: 271	n:2320000
KS ci ratio: 1.202391e-02	ci left: 4.354303e-02	ci right 4.407018e-02	k: 101630	n:2320000
CSRNP3   2320000 perm   2761 sec   (840 perm/sec)   p_kst 4.380603e-02   p_cons 1.168103e-04   p_joint 2.522845e-03

Joint ci ratio: 5.103881e-02	ci left: 2.460859e-03	ci right 2.590168e-03	k: 5883	n:2330000
Cons ci ratio: 2.376710e-01	ci left: 1.028729e-04	ci right 1.310124e-04	k: 271	n:2330000
KS ci ratio: 1.199649e-02	ci left: 4.355470e-02	ci right 4.408077e-02	k: 102094	n:2330000
CSRNP3   2330000 perm   2783 sec   (837 perm/sec)   p_kst 4.381717e-02   p_cons 1.163090e-04   p_joint 2.524893e-03

Joint ci ratio: 5.091346e-02	ci left: 2.462578e-03	ci right 2.591650e-03	k: 5912	n:2340000
Cons ci ratio: 2.372353e-01	ci left: 1.028352e-04	ci right 1.309052e-04	k: 272	n:2340000
KS ci ratio: 1.197175e-02	ci left: 4.354879e-02	ci right 4.407370e-02	k: 102517	n:2340000
CSRNP3   2340000 perm   2804 sec   (834 perm/sec)   p_kst 4.381068e-02   p_cons 1.162393e-04   p_joint 2.526496e-03

Joint ci ratio: 5.078046e-02	ci left: 2.465123e-03	ci right 2.593981e-03	k: 5943	n:2350000
Cons ci ratio: 2.368020e-01	ci left: 1.027978e-04	ci right 1.307989e-04	k: 273	n:2350000
KS ci ratio: 1.194365e-02	ci left: 4.356755e-02	ci right 4.409145e-02	k: 102998	n:2350000
CSRNP3   2350000 perm   2827 sec   (831 perm/sec)   p_kst 4.382894e-02   p_cons 1.161702e-04   p_joint 2.528936e-03

Joint ci ratio: 5.081503e-02	ci left: 2.451330e-03	ci right 2.579557e-03	k: 5935	n:2360000
Cons ci ratio: 2.363711e-01	ci left: 1.027609e-04	ci right 1.306935e-04	k: 274	n:2360000
KS ci ratio: 1.191792e-02	ci left: 4.357094e-02	ci right 4.409374e-02	k: 103443	n:2360000
CSRNP3   2360000 perm   2848 sec   (829 perm/sec)   p_kst 4.383178e-02   p_cons 1.161017e-04   p_joint 2.514831e-03

Joint ci ratio: 5.067854e-02	ci left: 2.454318e-03	ci right 2.582346e-03	k: 5967	n:2370000
Cons ci ratio: 2.363711e-01	ci left: 1.023273e-04	ci right 1.301420e-04	k: 274	n:2370000
KS ci ratio: 1.189253e-02	ci left: 4.357304e-02	ci right 4.409474e-02	k: 103885	n:2370000
CSRNP3   2370000 perm   2871 sec   (826 perm/sec)   p_kst 4.383333e-02   p_cons 1.156118e-04   p_joint 2.517722e-03

Joint ci ratio: 5.067030e-02	ci left: 2.444835e-03	ci right 2.572347e-03	k: 5969	n:2380000
Cons ci ratio: 2.355162e-01	ci left: 1.026880e-04	ci right 1.304851e-04	k: 276	n:2380000
KS ci ratio: 1.186480e-02	ci left: 4.359272e-02	ci right 4.411343e-02	k: 104369	n:2380000
CSRNP3   2380000 perm   2892 sec   (823 perm/sec)   p_kst 4.385252e-02   p_cons 1.159664e-04   p_joint 2.507983e-03

Joint ci ratio: 5.023794e-02	ci left: 2.477159e-03	ci right 2.605223e-03	k: 6072	n:2390000
Cons ci ratio: 2.350923e-01	ci left: 1.026521e-04	ci right 1.303822e-04	k: 277	n:2390000
KS ci ratio: 1.187290e-02	ci left: 4.336148e-02	ci right 4.387979e-02	k: 104252	n:2390000
CSRNP3   2390000 perm   2914 sec   (820 perm/sec)   p_kst 4.362008e-02   p_cons 1.158996e-04   p_joint 2.540586e-03

Joint ci ratio: 5.075613e-02	ci left: 2.416233e-03	ci right 2.542473e-03	k: 5949	n:2400000
Cons ci ratio: 2.350923e-01	ci left: 1.022244e-04	ci right 1.298390e-04	k: 277	n:2400000
KS ci ratio: 1.184863e-02	ci left: 4.335861e-02	ci right 4.387582e-02	k: 104680	n:2400000
CSRNP3   2400000 perm   2936 sec   (817 perm/sec)   p_kst 4.361667e-02   p_cons 1.154167e-04   p_joint 2.478750e-03

Joint ci ratio: 5.060739e-02	ci left: 2.420546e-03	ci right 2.546630e-03	k: 5984	n:2410000
Cons ci ratio: 2.342511e-01	ci left: 1.025813e-04	ci right 1.301788e-04	k: 279	n:2410000
KS ci ratio: 1.182379e-02	ci left: 4.336074e-02	ci right 4.387688e-02	k: 105120	n:2410000
CSRNP3   2410000 perm   2958 sec   (815 perm/sec)   p_kst 4.361826e-02   p_cons 1.157676e-04   p_joint 2.482988e-03

Joint ci ratio: 5.051045e-02	ci left: 2.419927e-03	ci right 2.545731e-03	k: 6007	n:2420000
Cons ci ratio: 2.342512e-01	ci left: 1.021574e-04	ci right 1.296409e-04	k: 279	n:2420000
KS ci ratio: 1.179911e-02	ci left: 4.336284e-02	ci right 4.387792e-02	k: 105560	n:2420000
CSRNP3   2420000 perm   2980 sec   (812 perm/sec)   p_kst 4.361983e-02   p_cons 1.152893e-04   p_joint 2.482231e-03

Joint ci ratio: 5.039731e-02	ci left: 2.420940e-03	ci right 2.546506e-03	k: 6034	n:2430000
Cons ci ratio: 2.342513e-01	ci left: 1.017370e-04	ci right 1.291074e-04	k: 279	n:2430000
KS ci ratio: 1.177297e-02	ci left: 4.337642e-02	ci right 4.389051e-02	k: 106028	n:2430000
CSRNP3   2430000 perm   3003 sec   (809 perm/sec)   p_kst 4.363292e-02   p_cons 1.148148e-04   p_joint 2.483128e-03

Joint ci ratio: 5.113765e-02	ci left: 2.341014e-03	ci right 2.464270e-03	k: 5861	n:2440000
Cons ci ratio: 2.338341e-01	ci left: 1.017059e-04	ci right 1.290120e-04	k: 280	n:2440000
KS ci ratio: 1.174941e-02	ci left: 4.337272e-02	ci right 4.388574e-02	k: 106454	n:2440000
CSRNP3   2440000 perm   3026 sec   (806 perm/sec)   p_kst 4.362869e-02   p_cons 1.147541e-04   p_joint 2.402049e-03

Joint ci ratio: 5.238427e-02	ci left: 2.220663e-03	ci right 2.340519e-03	k: 5586	n:2450000
Cons ci ratio: 2.330063e-01	ci left: 1.020593e-04	ci right 1.293494e-04	k: 282	n:2450000
KS ci ratio: 1.172600e-02	ci left: 4.336906e-02	ci right 4.388100e-02	k: 106880	n:2450000
CSRNP3   2450000 perm   3048 sec   (804 perm/sec)   p_kst 4.362449e-02   p_cons 1.151020e-04   p_joint 2.280000e-03

Joint ci ratio: 5.251657e-02	ci left: 2.200402e-03	ci right 2.319474e-03	k: 5558	n:2460000
Cons ci ratio: 2.317809e-01	ci left: 1.027930e-04	ci right 1.301140e-04	k: 285	n:2460000
KS ci ratio: 1.170347e-02	ci left: 4.336015e-02	ci right 4.387100e-02	k: 107293	n:2460000
CSRNP3   2460000 perm   3071 sec   (801 perm/sec)   p_kst 4.361504e-02   p_cons 1.158537e-04   p_joint 2.259350e-03

Joint ci ratio: 5.248843e-02	ci left: 2.193891e-03	ci right 2.312544e-03	k: 5564	n:2470000
Cons ci ratio: 2.317810e-01	ci left: 1.023768e-04	ci right 1.295872e-04	k: 285	n:2470000
KS ci ratio: 1.167999e-02	ci left: 4.335899e-02	ci right 4.386880e-02	k: 107725	n:2470000
CSRNP3   2470000 perm   3095 sec   (798 perm/sec)   p_kst 4.361336e-02   p_cons 1.153846e-04   p_joint 2.252632e-03

Joint ci ratio: 5.244147e-02	ci left: 2.189023e-03	ci right 2.307305e-03	k: 5574	n:2480000
Cons ci ratio: 2.317810e-01	ci left: 1.019640e-04	ci right 1.290647e-04	k: 285	n:2480000
KS ci ratio: 1.165682e-02	ci left: 4.335664e-02	ci right 4.386540e-02	k: 108154	n:2480000
CSRNP3   2480000 perm   3118 sec   (795 perm/sec)   p_kst 4.361048e-02   p_cons 1.149194e-04   p_joint 2.247581e-03

Joint ci ratio: 5.237114e-02	ci left: 2.186177e-03	ci right 2.304142e-03	k: 5589	n:2490000
Cons ci ratio: 2.313769e-01	ci left: 1.019328e-04	ci right 1.289712e-04	k: 286	n:2490000
KS ci ratio: 1.163429e-02	ci left: 4.335070e-02	ci right 4.385840e-02	k: 108574	n:2490000
CSRNP3   2490000 perm   3141 sec   (793 perm/sec)   p_kst 4.360402e-02   p_cons 1.148594e-04   p_joint 2.244578e-03

Joint ci ratio: 5.221713e-02	ci left: 2.190460e-03	ci right 2.308298e-03	k: 5622	n:2500000
Cons ci ratio: 2.305749e-01	ci left: 1.022788e-04	ci right 1.293016e-04	k: 288	n:2500000
KS ci ratio: 1.161211e-02	ci left: 4.334321e-02	ci right 4.384985e-02	k: 108990	n:2500000
CSRNP3   2500000 perm   3164 sec   (790 perm/sec)   p_kst 4.359600e-02   p_cons 1.152000e-04   p_joint 2.248800e-03

Joint ci ratio: 5.211066e-02	ci left: 2.190777e-03	ci right 2.308384e-03	k: 5645	n:2510000
Cons ci ratio: 2.301770e-01	ci left: 1.022467e-04	ci right 1.292078e-04	k: 289	n:2510000
KS ci ratio: 1.158879e-02	ci left: 4.334492e-02	ci right 4.385055e-02	k: 109429	n:2510000
CSRNP3   2510000 perm   3188 sec   (787 perm/sec)   p_kst 4.359721e-02   p_cons 1.151394e-04   p_joint 2.249004e-03

Joint ci ratio: 5.202783e-02	ci left: 2.189133e-03	ci right 2.306460e-03	k: 5663	n:2520000
Cons ci ratio: 2.301770e-01	ci left: 1.018410e-04	ci right 1.286951e-04	k: 289	n:2520000
KS ci ratio: 1.156517e-02	ci left: 4.334979e-02	ci right 4.385444e-02	k: 109876	n:2520000
CSRNP3   2520000 perm   3211 sec   (785 perm/sec)   p_kst 4.360159e-02   p_cons 1.146825e-04   p_joint 2.247222e-03

Joint ci ratio: 5.220852e-02	ci left: 2.165266e-03	ci right 2.281728e-03	k: 5624	n:2530000
Cons ci ratio: 2.297812e-01	ci left: 1.018109e-04	ci right 1.286044e-04	k: 290	n:2530000
KS ci ratio: 1.154256e-02	ci left: 4.334831e-02	ci right 4.385195e-02	k: 110307	n:2530000
CSRNP3   2530000 perm   3235 sec   (782 perm/sec)   p_kst 4.359960e-02   p_cons 1.146245e-04   p_joint 2.222925e-03

Joint ci ratio: 5.292552e-02	ci left: 2.098072e-03	ci right 2.212517e-03	k: 5473	n:2540000
Cons ci ratio: 2.289956e-01	ci left: 1.021522e-04	ci right 1.289306e-04	k: 292	n:2540000
KS ci ratio: 1.152042e-02	ci left: 4.334448e-02	ci right 4.384711e-02	k: 110732	n:2540000
CSRNP3   2540000 perm   3259 sec   (779 perm/sec)   p_kst 4.359528e-02   p_cons 1.149606e-04   p_joint 2.154724e-03

Joint ci ratio: 5.280023e-02	ci left: 2.099905e-03	ci right 2.214171e-03	k: 5499	n:2550000
Cons ci ratio: 2.282180e-01	ci left: 1.024911e-04	ci right 1.292542e-04	k: 294	n:2550000
KS ci ratio: 1.149753e-02	ci left: 4.334695e-02	ci right 4.384860e-02	k: 111173	n:2550000
CSRNP3   2550000 perm   3282 sec   (777 perm/sec)   p_kst 4.359725e-02   p_cons 1.152941e-04   p_joint 2.156471e-03

Joint ci ratio: 5.272844e-02	ci left: 2.097485e-03	ci right 2.211459e-03	k: 5514	n:2560000
Cons ci ratio: 2.278322e-01	ci left: 1.024590e-04	ci right 1.291622e-04	k: 295	n:2560000
KS ci ratio: 1.147441e-02	ci left: 4.335212e-02	ci right 4.385282e-02	k: 111621	n:2560000
CSRNP3   2560000 perm   3306 sec   (774 perm/sec)   p_kst 4.360195e-02   p_cons 1.152344e-04   p_joint 2.153906e-03

Joint ci ratio: 5.258077e-02	ci left: 2.101227e-03	ci right 2.215075e-03	k: 5545	n:2570000
Cons ci ratio: 2.274483e-01	ci left: 1.024273e-04	ci right 1.290708e-04	k: 296	n:2570000
KS ci ratio: 1.145255e-02	ci left: 4.334911e-02	ci right 4.384881e-02	k: 112048	n:2570000
CSRNP3   2570000 perm   3330 sec   (772 perm/sec)   p_kst 4.359844e-02   p_cons 1.151751e-04   p_joint 2.157588e-03

Joint ci ratio: 5.248151e-02	ci left: 2.101115e-03	ci right 2.214736e-03	k: 5566	n:2580000
Cons ci ratio: 2.274483e-01	ci left: 1.020302e-04	ci right 1.285706e-04	k: 296	n:2580000
KS ci ratio: 1.143017e-02	ci left: 4.335076e-02	ci right 4.384949e-02	k: 112487	n:2580000
CSRNP3   2580000 perm   3354 sec   (769 perm/sec)   p_kst 4.359961e-02   p_cons 1.147287e-04   p_joint 2.157364e-03

Joint ci ratio: 5.234058e-02	ci left: 2.104434e-03	ci right 2.217919e-03	k: 5596	n:2590000
Cons ci ratio: 2.266863e-01	ci left: 1.023646e-04	ci right 1.288902e-04	k: 298	n:2590000
KS ci ratio: 1.140671e-02	ci left: 4.336125e-02	ci right 4.385907e-02	k: 112949	n:2590000
CSRNP3   2590000 perm   3377 sec   (767 perm/sec)   p_kst 4.360965e-02   p_cons 1.150579e-04   p_joint 2.160618e-03

Joint ci ratio: 5.231271e-02	ci left: 2.098617e-03	ci right 2.211727e-03	k: 5602	n:2600000
Cons ci ratio: 2.266864e-01	ci left: 1.019709e-04	ci right 1.283945e-04	k: 298	n:2600000
KS ci ratio: 1.138513e-02	ci left: 4.335901e-02	ci right 4.385586e-02	k: 113378	n:2600000
CSRNP3   2600000 perm   3401 sec   (764 perm/sec)   p_kst 4.360692e-02   p_cons 1.146154e-04   p_joint 2.154615e-03

Joint ci ratio: 5.290284e-02	ci left: 2.043690e-03	ci right 2.155120e-03	k: 5478	n:2610000
Cons ci ratio: 2.255576e-01	ci left: 1.026645e-04	ci right 1.291170e-04	k: 301	n:2610000
KS ci ratio: 1.136460e-02	ci left: 4.334990e-02	ci right 4.384575e-02	k: 113789	n:2610000
CSRNP3   2610000 perm   3425 sec   (762 perm/sec)   p_kst 4.359732e-02   p_cons 1.153257e-04   p_joint 2.098851e-03

Joint ci ratio: 5.282100e-02	ci left: 2.042293e-03	ci right 2.153469e-03	k: 5495	n:2620000
Cons ci ratio: 2.255576e-01	ci left: 1.022727e-04	ci right 1.286241e-04	k: 301	n:2620000
KS ci ratio: 1.134383e-02	ci left: 4.334353e-02	ci right 4.383839e-02	k: 114207	n:2620000
CSRNP3   2620000 perm   3449 sec   (760 perm/sec)   p_kst 4.359046e-02   p_cons 1.148855e-04   p_joint 2.097328e-03

Joint ci ratio: 5.274433e-02	ci left: 2.040531e-03	ci right 2.151445e-03	k: 5511	n:2630000
Cons ci ratio: 2.255577e-01	ci left: 1.018838e-04	ci right 1.281351e-04	k: 301	n:2630000
KS ci ratio: 1.132316e-02	ci left: 4.333721e-02	ci right 4.383109e-02	k: 114625	n:2630000
CSRNP3   2630000 perm   3474 sec   (757 perm/sec)   p_kst 4.358365e-02   p_cons 1.144487e-04   p_joint 2.095437e-03

Joint ci ratio: 5.266800e-02	ci left: 2.038782e-03	ci right 2.149436e-03	k: 5527	n:2640000
Cons ci ratio: 2.251851e-01	ci left: 1.018553e-04	ci right 1.280499e-04	k: 302	n:2640000
KS ci ratio: 1.130200e-02	ci left: 4.333548e-02	ci right 4.382841e-02	k: 115055	n:2640000
CSRNP3   2640000 perm   3498 sec   (755 perm/sec)   p_kst 4.358144e-02   p_cons 1.143939e-04   p_joint 2.093561e-03

Joint ci ratio: 5.257774e-02	ci left: 2.038164e-03	ci right 2.148589e-03	k: 5546	n:2650000
Cons ci ratio: 2.251852e-01	ci left: 1.014709e-04	ci right 1.275667e-04	k: 302	n:2650000
KS ci ratio: 1.128192e-02	ci left: 4.332660e-02	ci right 4.381855e-02	k: 115466	n:2650000
CSRNP3   2650000 perm   3523 sec   (752 perm/sec)   p_kst 4.357208e-02   p_cons 1.139623e-04   p_joint 2.092830e-03

Joint ci ratio: 5.247849e-02	ci left: 2.038293e-03	ci right 2.148510e-03	k: 5567	n:2660000
Cons ci ratio: 2.244456e-01	ci left: 1.017990e-04	ci right 1.278812e-04	k: 304	n:2660000
KS ci ratio: 1.126144e-02	ci left: 4.332154e-02	ci right 4.381253e-02	k: 115887	n:2660000
CSRNP3   2660000 perm   3548 sec   (750 perm/sec)   p_kst 4.356654e-02   p_cons 1.142857e-04   p_joint 2.092857e-03

Joint ci ratio: 5.300598e-02	ci left: 1.990002e-03	ci right 2.098723e-03	k: 5457	n:2670000
Cons ci ratio: 2.237133e-01	ci left: 1.021247e-04	ci right 1.281933e-04	k: 306	n:2670000
KS ci ratio: 1.123961e-02	ci left: 4.332736e-02	ci right 4.381746e-02	k: 116337	n:2670000
CSRNP3   2670000 perm   3572 sec   (748 perm/sec)   p_kst 4.357191e-02   p_cons 1.146067e-04   p_joint 2.043820e-03

Joint ci ratio: 5.292366e-02	ci left: 1.988836e-03	ci right 2.097319e-03	k: 5474	n:2680000
Cons ci ratio: 2.237134e-01	ci left: 1.017437e-04	ci right 1.277150e-04	k: 306	n:2680000
KS ci ratio: 1.121976e-02	ci left: 4.331936e-02	ci right 4.380850e-02	k: 116750	n:2680000
CSRNP3   2680000 perm   3597 sec   (745 perm/sec)   p_kst 4.356343e-02   p_cons 1.141791e-04   p_joint 2.042537e-03

Joint ci ratio: 5.280801e-02	ci left: 1.990247e-03	ci right 2.098562e-03	k: 5498	n:2690000
Cons ci ratio: 2.237134e-01	ci left: 1.013654e-04	ci right 1.272402e-04	k: 306	n:2690000
KS ci ratio: 1.120012e-02	ci left: 4.331068e-02	ci right 4.379886e-02	k: 117161	n:2690000
CSRNP3   2690000 perm   3621 sec   (743 perm/sec)   p_kst 4.355428e-02   p_cons 1.137546e-04   p_joint 2.043866e-03

Joint ci ratio: 5.272660e-02	ci left: 1.989089e-03	ci right 2.097169e-03	k: 5515	n:2700000
Cons ci ratio: 2.233499e-01	ci left: 1.013396e-04	ci right 1.271600e-04	k: 307	n:2700000
KS ci ratio: 1.118053e-02	ci left: 4.330243e-02	ci right 4.378966e-02	k: 117573	n:2700000
CSRNP3   2700000 perm   3646 sec   (740 perm/sec)   p_kst 4.354556e-02   p_cons 1.137037e-04   p_joint 2.042593e-03

Joint ci ratio: 5.288072e-02	ci left: 1.970096e-03	ci right 2.077467e-03	k: 5483	n:2710000
Cons ci ratio: 2.229883e-01	ci left: 1.013141e-04	ci right 1.270804e-04	k: 308	n:2710000
KS ci ratio: 1.115877e-02	ci left: 4.331118e-02	ci right 4.379755e-02	k: 118031	n:2710000
CSRNP3   2710000 perm   3672 sec   (738 perm/sec)   p_kst 4.355387e-02   p_cons 1.136531e-04   p_joint 2.023247e-03

Joint ci ratio: 5.279898e-02	ci left: 1.969021e-03	ci right 2.076162e-03	k: 5500	n:2720000
Cons ci ratio: 2.226283e-01	ci left: 1.012887e-04	ci right 1.270013e-04	k: 309	n:2720000
KS ci ratio: 1.113998e-02	ci left: 4.329859e-02	ci right 4.378400e-02	k: 118431	n:2720000
CSRNP3   2720000 perm   3696 sec   (736 perm/sec)   p_kst 4.354081e-02   p_cons 1.136029e-04   p_joint 2.022059e-03

Joint ci ratio: 5.272241e-02	ci left: 1.967591e-03	ci right 2.074495e-03	k: 5516	n:2730000
Cons ci ratio: 2.212056e-01	ci left: 1.023015e-04	ci right 1.280826e-04	k: 313	n:2730000
KS ci ratio: 1.111900e-02	ci left: 4.330327e-02	ci right 4.378781e-02	k: 118878	n:2730000
CSRNP3   2730000 perm   3721 sec   (734 perm/sec)   p_kst 4.354505e-02   p_cons 1.146520e-04   p_joint 2.020513e-03

Joint ci ratio: 5.262234e-02	ci left: 1.967974e-03	ci right 2.074689e-03	k: 5537	n:2740000
Cons ci ratio: 2.208542e-01	ci left: 1.022729e-04	ci right 1.280003e-04	k: 314	n:2740000
KS ci ratio: 1.109759e-02	ci left: 4.331192e-02	ci right 4.379561e-02	k: 119336	n:2740000
CSRNP3   2740000 perm   3746 sec   (731 perm/sec)   p_kst 4.355328e-02   p_cons 1.145985e-04   p_joint 2.020803e-03

Joint ci ratio: 5.255127e-02	ci left: 1.966200e-03	ci right 2.072671e-03	k: 5552	n:2750000
Cons ci ratio: 2.205045e-01	ci left: 1.022445e-04	ci right 1.279185e-04	k: 315	n:2750000
KS ci ratio: 1.107646e-02	ci left: 4.331942e-02	ci right 4.380227e-02	k: 119791	n:2750000
CSRNP3   2750000 perm   3771 sec   (729 perm/sec)   p_kst 4.356036e-02   p_cons 1.145455e-04   p_joint 2.018909e-03

Joint ci ratio: 5.248049e-02	ci left: 1.964440e-03	ci right 2.070667e-03	k: 5567	n:2760000
Cons ci ratio: 2.205046e-01	ci left: 1.018741e-04	ci right 1.274551e-04	k: 315	n:2760000
KS ci ratio: 1.105602e-02	ci left: 4.332253e-02	ci right 4.380452e-02	k: 120234	n:2760000
CSRNP3   2760000 perm   3796 sec   (727 perm/sec)   p_kst 4.356304e-02   p_cons 1.141304e-04   p_joint 2.017029e-03

Joint ci ratio: 5.240529e-02	ci left: 1.963048e-03	ci right 2.069044e-03	k: 5583	n:2770000
Cons ci ratio: 2.201565e-01	ci left: 1.018474e-04	ci right 1.273759e-04	k: 316	n:2770000
KS ci ratio: 1.103674e-02	ci left: 4.331769e-02	ci right 4.379878e-02	k: 120655	n:2770000
CSRNP3   2770000 perm   3822 sec   (725 perm/sec)   p_kst 4.355776e-02   p_cons 1.140794e-04   p_joint 2.015523e-03

Joint ci ratio: 5.427316e-02	ci left: 1.822180e-03	ci right 1.924186e-03	k: 5206	n:2780000
Cons ci ratio: 2.194652e-01	ci left: 1.021608e-04	ci right 1.276766e-04	k: 318	n:2780000
KS ci ratio: 1.101619e-02	ci left: 4.332330e-02	ci right 4.380355e-02	k: 121105	n:2780000
CSRNP3   2780000 perm   3848 sec   (723 perm/sec)   p_kst 4.356295e-02   p_cons 1.143885e-04   p_joint 1.872662e-03

Joint ci ratio: 5.414328e-02	ci left: 1.824488e-03	ci right 1.926371e-03	k: 5231	n:2790000
Cons ci ratio: 2.187804e-01	ci left: 1.024722e-04	ci right 1.279751e-04	k: 320	n:2790000
KS ci ratio: 1.099754e-02	ci left: 4.331528e-02	ci right 4.379463e-02	k: 121517	n:2790000
CSRNP3   2790000 perm   3874 sec   (720 perm/sec)   p_kst 4.355448e-02   p_cons 1.146953e-04   p_joint 1.874910e-03

Joint ci ratio: 5.429442e-02	ci left: 1.807755e-03	ci right 1.908994e-03	k: 5202	n:2800000
Cons ci ratio: 2.184405e-01	ci left: 1.024438e-04	ci right 1.278947e-04	k: 321	n:2800000
KS ci ratio: 1.097735e-02	ci left: 4.331979e-02	ci right 4.379830e-02	k: 121964	n:2800000
CSRNP3   2800000 perm   3899 sec   (718 perm/sec)   p_kst 4.355857e-02   p_cons 1.146429e-04   p_joint 1.857857e-03

Joint ci ratio: 5.419555e-02	ci left: 1.807991e-03	ci right 1.909054e-03	k: 5221	n:2810000
Cons ci ratio: 2.184405e-01	ci left: 1.020792e-04	ci right 1.274396e-04	k: 321	n:2810000
KS ci ratio: 1.095853e-02	ci left: 4.331468e-02	ci right 4.379231e-02	k: 122384	n:2810000
CSRNP3   2810000 perm   3924 sec   (716 perm/sec)   p_kst 4.355302e-02   p_cons 1.142349e-04   p_joint 1.858007e-03

Joint ci ratio: 5.435761e-02	ci left: 1.790736e-03	ci right 1.891143e-03	k: 5190	n:2820000
Cons ci ratio: 2.181021e-01	ci left: 1.020525e-04	ci right 1.273617e-04	k: 322	n:2820000
KS ci ratio: 1.093892e-02	ci left: 4.331633e-02	ci right 4.379312e-02	k: 122823	n:2820000
CSRNP3   2820000 perm   3950 sec   (714 perm/sec)   p_kst 4.355426e-02   p_cons 1.141844e-04   p_joint 1.840426e-03

Joint ci ratio: 5.091600e-02	ci left: 2.036882e-03	ci right 2.143647e-03	k: 5914	n:2830000
Cons ci ratio: 2.177653e-01	ci left: 1.020259e-04	ci right 1.272842e-04	k: 323	n:2830000
KS ci ratio: 1.091849e-02	ci left: 4.332502e-02	ci right 4.380100e-02	k: 123282	n:2830000
CSRNP3   2830000 perm   3976 sec   (712 perm/sec)   p_kst 4.356254e-02   p_cons 1.141343e-04   p_joint 2.089753e-03

Joint ci ratio: 5.115069e-02	ci left: 2.010937e-03	ci right 2.116843e-03	k: 5860	n:2840000
Cons ci ratio: 2.177653e-01	ci left: 1.016667e-04	ci right 1.268361e-04	k: 323	n:2840000
KS ci ratio: 1.089974e-02	ci left: 4.332171e-02	ci right 4.379683e-02	k: 123707	n:2840000
CSRNP3   2840000 perm   4002 sec   (710 perm/sec)   p_kst 4.355880e-02   p_cons 1.137324e-04   p_joint 2.063380e-03

Joint ci ratio: 5.105060e-02	ci left: 2.011848e-03	ci right 2.117588e-03	k: 5883	n:2850000
Cons ci ratio: 2.174300e-01	ci left: 1.016417e-04	ci right 1.267610e-04	k: 324	n:2850000
KS ci ratio: 1.088104e-02	ci left: 4.331877e-02	ci right 4.379304e-02	k: 124133	n:2850000
CSRNP3   2850000 perm   4029 sec   (707 perm/sec)   p_kst 4.355544e-02   p_cons 1.136842e-04   p_joint 2.064211e-03

Joint ci ratio: 5.094246e-02	ci left: 2.013444e-03	ci right 2.119037e-03	k: 5908	n:2860000
Cons ci ratio: 2.174301e-01	ci left: 1.012863e-04	ci right 1.263178e-04	k: 324	n:2860000
KS ci ratio: 1.086253e-02	ci left: 4.331515e-02	ci right 4.378857e-02	k: 124557	n:2860000
CSRNP3   2860000 perm   4055 sec   (705 perm/sec)   p_kst 4.355140e-02   p_cons 1.132867e-04   p_joint 2.065734e-03

Joint ci ratio: 5.167964e-02	ci left: 1.948985e-03	ci right 2.052721e-03	k: 5741	n:2870000
Cons ci ratio: 2.167641e-01	ci left: 1.015924e-04	ci right 1.266123e-04	k: 326	n:2870000
KS ci ratio: 1.084279e-02	ci left: 4.332164e-02	ci right 4.379427e-02	k: 125010	n:2870000
CSRNP3   2870000 perm   4082 sec   (703 perm/sec)   p_kst 4.355749e-02   p_cons 1.135889e-04   p_joint 2.000348e-03

Joint ci ratio: 5.161232e-02	ci left: 1.947359e-03	ci right 2.050869e-03	k: 5756	n:2880000
Cons ci ratio: 2.164334e-01	ci left: 1.015680e-04	ci right 1.265387e-04	k: 327	n:2880000
KS ci ratio: 1.082421e-02	ci left: 4.332012e-02	ci right 4.379191e-02	k: 125440	n:2880000
CSRNP3   2880000 perm   4108 sec   (701 perm/sec)   p_kst 4.355556e-02   p_cons 1.135417e-04   p_joint 1.998611e-03

Joint ci ratio: 5.154526e-02	ci left: 1.945744e-03	ci right 2.049030e-03	k: 5771	n:2890000
Cons ci ratio: 2.164335e-01	ci left: 1.012166e-04	ci right 1.261009e-04	k: 327	n:2890000
KS ci ratio: 1.080567e-02	ci left: 4.331895e-02	ci right 4.378992e-02	k: 125871	n:2890000
CSRNP3   2890000 perm   4135 sec   (699 perm/sec)   p_kst 4.355398e-02   p_cons 1.131488e-04   p_joint 1.996886e-03

Joint ci ratio: 5.145173e-02	ci left: 1.946183e-03	ci right 2.049299e-03	k: 5792	n:2900000
Cons ci ratio: 2.157766e-01	ci left: 1.015199e-04	ci right 1.263930e-04	k: 329	n:2900000
KS ci ratio: 1.078615e-02	ci left: 4.332605e-02	ci right 4.379624e-02	k: 126326	n:2900000
CSRNP3   2900000 perm   4162 sec   (697 perm/sec)   p_kst 4.356069e-02   p_cons 1.134483e-04   p_joint 1.997241e-03

Joint ci ratio: 5.135430e-02	ci left: 1.946958e-03	ci right 2.049914e-03	k: 5814	n:2910000
Cons ci ratio: 2.157766e-01	ci left: 1.011710e-04	ci right 1.259586e-04	k: 329	n:2910000
KS ci ratio: 1.076710e-02	ci left: 4.333036e-02	ci right 4.379976e-02	k: 126773	n:2910000
CSRNP3   2910000 perm   4189 sec   (695 perm/sec)   p_kst 4.356460e-02   p_cons 1.130584e-04   p_joint 1.997938e-03

Joint ci ratio: 5.127061e-02	ci left: 1.946713e-03	ci right 2.049484e-03	k: 5833	n:2920000
Cons ci ratio: 2.154504e-01	ci left: 1.011485e-04	ci right 1.258882e-04	k: 330	n:2920000
KS ci ratio: 1.074951e-02	ci left: 4.332405e-02	ci right 4.379261e-02	k: 127189	n:2920000
CSRNP3   2920000 perm   4216 sec   (693 perm/sec)   p_kst 4.355788e-02   p_cons 1.130137e-04   p_joint 1.997603e-03

Joint ci ratio: 5.120048e-02	ci left: 1.945460e-03	ci right 2.048020e-03	k: 5849	n:2930000
Cons ci ratio: 2.151257e-01	ci left: 1.011262e-04	ci right 1.258182e-04	k: 331	n:2930000
KS ci ratio: 1.073109e-02	ci left: 4.332493e-02	ci right 4.379269e-02	k: 127626	n:2930000
CSRNP3   2930000 perm   4243 sec   (691 perm/sec)   p_kst 4.355836e-02   p_cons 1.129693e-04   p_joint 1.996246e-03

Joint ci ratio: 4.998667e-02	ci left: 2.035229e-03	ci right 2.139905e-03	k: 6136	n:2940000
Cons ci ratio: 2.135237e-01	ci left: 1.023916e-04	ci right 1.271821e-04	k: 336	n:2940000
KS ci ratio: 1.071202e-02	ci left: 4.333158e-02	ci right 4.379858e-02	k: 128080	n:2940000
CSRNP3   2940000 perm   4269 sec   (689 perm/sec)   p_kst 4.356463e-02   p_cons 1.142857e-04   p_joint 2.087075e-03

Joint ci ratio: 5.007277e-02	ci left: 2.021300e-03	ci right 2.125444e-03	k: 6115	n:2950000
Cons ci ratio: 2.135238e-01	ci left: 1.020445e-04	ci right 1.267510e-04	k: 336	n:2950000
KS ci ratio: 1.069305e-02	ci left: 4.333818e-02	ci right 4.380441e-02	k: 128534	n:2950000
CSRNP3   2950000 perm   4296 sec   (687 perm/sec)   p_kst 4.357085e-02   p_cons 1.138983e-04   p_joint 2.072881e-03

Joint ci ratio: 4.996663e-02	ci left: 2.023146e-03	ci right 2.127157e-03	k: 6141	n:2960000
Cons ci ratio: 2.135238e-01	ci left: 1.016998e-04	ci right 1.263228e-04	k: 336	n:2960000
KS ci ratio: 1.067505e-02	ci left: 4.333799e-02	ci right 4.380344e-02	k: 128968	n:2960000
CSRNP3   2960000 perm   4323 sec   (685 perm/sec)   p_kst 4.357027e-02   p_cons 1.135135e-04   p_joint 2.074662e-03

Joint ci ratio: 4.990577e-02	ci left: 2.021321e-03	ci right 2.125108e-03	k: 6156	n:2970000
Cons ci ratio: 2.135239e-01	ci left: 1.013573e-04	ci right 1.258974e-04	k: 336	n:2970000
KS ci ratio: 1.065726e-02	ci left: 4.333681e-02	ci right 4.380146e-02	k: 129399	n:2970000
CSRNP3   2970000 perm   4350 sec   (683 perm/sec)   p_kst 4.356869e-02   p_cons 1.131313e-04   p_joint 2.072727e-03

Joint ci ratio: 4.983301e-02	ci left: 2.020503e-03	ci right 2.124092e-03	k: 6174	n:2980000
Cons ci ratio: 2.128930e-01	ci left: 1.016525e-04	ci right 1.261819e-04	k: 338	n:2980000
KS ci ratio: 1.063974e-02	ci left: 4.333429e-02	ci right 4.379814e-02	k: 129826	n:2980000
CSRNP3   2980000 perm   4377 sec   (681 perm/sec)   p_kst 4.356577e-02   p_cons 1.134228e-04   p_joint 2.071812e-03

Joint ci ratio: 5.006936e-02	ci left: 1.994589e-03	ci right 2.097349e-03	k: 6116	n:2990000
Cons ci ratio: 2.128931e-01	ci left: 1.013126e-04	ci right 1.257599e-04	k: 338	n:2990000
KS ci ratio: 1.062226e-02	ci left: 4.333212e-02	ci right 4.379519e-02	k: 130254	n:2990000
CSRNP3   2990000 perm   4405 sec   (679 perm/sec)   p_kst 4.356321e-02   p_cons 1.130435e-04   p_joint 2.045485e-03

Joint ci ratio: 5.000404e-02	ci left: 1.993207e-03	ci right 2.095758e-03	k: 6132	n:3000000
Cons ci ratio: 2.128931e-01	ci left: 1.009748e-04	ci right 1.253407e-04	k: 338	n:3000000
KS ci ratio: 1.060329e-02	ci left: 4.334227e-02	ci right 4.380461e-02	k: 130719	n:3000000
CSRNP3   3000000 perm   4433 sec   (677 perm/sec)   p_kst 4.357300e-02   p_cons 1.126667e-04   p_joint 2.044000e-03

Joint ci ratio: 4.993491e-02	ci left: 1.992162e-03	ci right 2.094514e-03	k: 6149	n:3010000
Cons ci ratio: 2.128932e-01	ci left: 1.006394e-04	ci right 1.249243e-04	k: 338	n:3010000
KS ci ratio: 1.058338e-02	ci left: 4.336064e-02	ci right 4.382230e-02	k: 131209	n:3010000
CSRNP3   3010000 perm   4461 sec   (675 perm/sec)   p_kst 4.359103e-02   p_cons 1.122924e-04   p_joint 2.042857e-03

Joint ci ratio: 4.987012e-02	ci left: 1.990798e-03	ci right 2.092942e-03	k: 6165	n:3020000
Cons ci ratio: 2.122679e-01	ci left: 1.009331e-04	ci right 1.252081e-04	k: 340	n:3020000
KS ci ratio: 1.056575e-02	ci left: 4.336171e-02	ci right 4.382261e-02	k: 131647	n:3020000
CSRNP3   3020000 perm   4488 sec   (673 perm/sec)   p_kst 4.359172e-02   p_cons 1.125828e-04   p_joint 2.041391e-03

Joint ci ratio: 4.974916e-02	ci left: 1.994005e-03	ci right 2.096059e-03	k: 6195	n:3030000
Cons ci ratio: 2.122679e-01	ci left: 1.006000e-04	ci right 1.247948e-04	k: 340	n:3030000
KS ci ratio: 1.054721e-02	ci left: 4.337067e-02	ci right 4.383086e-02	k: 132109	n:3030000
CSRNP3   3030000 perm   4515 sec   (671 perm/sec)   p_kst 4.360033e-02   p_cons 1.122112e-04   p_joint 2.044554e-03

Joint ci ratio: 5.016067e-02	ci left: 1.954636e-03	ci right 2.055527e-03	k: 6094	n:3040000
Cons ci ratio: 2.122680e-01	ci left: 1.002691e-04	ci right 1.243843e-04	k: 340	n:3040000
KS ci ratio: 1.052890e-02	ci left: 4.337860e-02	ci right 4.383806e-02	k: 132568	n:3040000
CSRNP3   3040000 perm   4543 sec   (669 perm/sec)   p_kst 4.360789e-02   p_cons 1.118421e-04   p_joint 2.004605e-03

Joint ci ratio: 4.789154e-02	ci left: 2.139305e-03	ci right 2.244594e-03	k: 6684	n:3050000
Cons ci ratio: 2.113403e-01	ci left: 1.008718e-04	ci right 1.250122e-04	k: 343	n:3050000
KS ci ratio: 1.051101e-02	ci left: 4.338385e-02	ci right 4.384259e-02	k: 133019	n:3050000
CSRNP3   3050000 perm   4571 sec   (667 perm/sec)   p_kst 4.361279e-02   p_cons 1.124590e-04   p_joint 2.191475e-03

Joint ci ratio: 4.780579e-02	ci left: 2.140063e-03	ci right 2.245196e-03	k: 6708	n:3060000
Cons ci ratio: 2.110338e-01	ci left: 1.008516e-04	ci right 1.249477e-04	k: 344	n:3060000
KS ci ratio: 1.049259e-02	ci left: 4.339396e-02	ci right 4.385200e-02	k: 133485	n:3060000
CSRNP3   3060000 perm   4599 sec   (665 perm/sec)   p_kst 4.362255e-02   p_cons 1.124183e-04   p_joint 2.192157e-03

Joint ci ratio: 4.768147e-02	ci left: 2.144357e-03	ci right 2.249419e-03	k: 6743	n:3070000
Cons ci ratio: 2.104247e-01	ci left: 1.011402e-04	ci right 1.252265e-04	k: 346	n:3070000
KS ci ratio: 1.047574e-02	ci left: 4.339231e-02	ci right 4.384959e-02	k: 133915	n:3070000
CSRNP3   3070000 perm   4627 sec   (663 perm/sec)   p_kst 4.362052e-02   p_cons 1.127036e-04   p_joint 2.196417e-03

Joint ci ratio: 4.761447e-02	ci left: 2.143490e-03	ci right 2.248358e-03	k: 6762	n:3080000
Cons ci ratio: 2.104247e-01	ci left: 1.008118e-04	ci right 1.248199e-04	k: 346	n:3080000
KS ci ratio: 1.045836e-02	ci left: 4.339553e-02	ci right 4.385208e-02	k: 134360	n:3080000
CSRNP3   3080000 perm   4655 sec   (662 perm/sec)   p_kst 4.362338e-02   p_cons 1.123377e-04   p_joint 2.195455e-03

Joint ci ratio: 4.753020e-02	ci left: 2.144228e-03	ci right 2.248942e-03	k: 6786	n:3090000
Cons ci ratio: 2.095209e-01	ci left: 1.014054e-04	ci right 1.254378e-04	k: 349	n:3090000
KS ci ratio: 1.044209e-02	ci left: 4.339066e-02	ci right 4.384644e-02	k: 134780	n:3090000
CSRNP3   3090000 perm   4683 sec   (660 perm/sec)   p_kst 4.361812e-02   p_cons 1.129450e-04   p_joint 2.196117e-03

Joint ci ratio: 4.745335e-02	ci left: 2.144323e-03	ci right 2.248868e-03	k: 6808	n:3100000
Cons ci ratio: 2.092222e-01	ci left: 1.013840e-04	ci right 1.253727e-04	k: 350	n:3100000
KS ci ratio: 1.042459e-02	ci left: 4.339612e-02	ci right 4.385119e-02	k: 135232	n:3100000
CSRNP3   3100000 perm   4711 sec   (658 perm/sec)   p_kst 4.362323e-02   p_cons 1.129032e-04   p_joint 2.196129e-03

Joint ci ratio: 4.738035e-02	ci left: 2.144101e-03	ci right 2.248469e-03	k: 6829	n:3110000
Cons ci ratio: 2.092223e-01	ci left: 1.010580e-04	ci right 1.249695e-04	k: 350	n:3110000
KS ci ratio: 1.040715e-02	ci left: 4.340186e-02	ci right 4.385622e-02	k: 135685	n:3110000
CSRNP3   3110000 perm   4740 sec   (656 perm/sec)   p_kst 4.362862e-02   p_cons 1.125402e-04   p_joint 2.195820e-03

Joint ci ratio: 4.726621e-02	ci left: 2.147681e-03	ci right 2.251965e-03	k: 6862	n:3120000
Cons ci ratio: 2.089249e-01	ci left: 1.010378e-04	ci right 1.249063e-04	k: 351	n:3120000
KS ci ratio: 1.038959e-02	ci left: 4.340917e-02	ci right 4.386284e-02	k: 136143	n:3120000
CSRNP3   3120000 perm   4768 sec   (654 perm/sec)   p_kst 4.363558e-02   p_cons 1.125000e-04   p_joint 2.199359e-03

Joint ci ratio: 4.718720e-02	ci left: 2.148081e-03	ci right 2.252205e-03	k: 6885	n:3130000
Cons ci ratio: 2.086287e-01	ci left: 1.010178e-04	ci right 1.248434e-04	k: 352	n:3130000
KS ci ratio: 1.037359e-02	ci left: 4.340463e-02	ci right 4.385755e-02	k: 136564	n:3130000
CSRNP3   3130000 perm   4797 sec   (653 perm/sec)   p_kst 4.363067e-02   p_cons 1.124601e-04   p_joint 2.199681e-03

Joint ci ratio: 4.710859e-02	ci left: 2.148478e-03	ci right 2.252443e-03	k: 6908	n:3140000
Cons ci ratio: 2.083339e-01	ci left: 1.009979e-04	ci right 1.247809e-04	k: 353	n:3140000
KS ci ratio: 1.035743e-02	ci left: 4.340204e-02	ci right 4.385422e-02	k: 136991	n:3140000
CSRNP3   3140000 perm   4826 sec   (651 perm/sec)   p_kst 4.362771e-02   p_cons 1.124204e-04   p_joint 2.200000e-03

Joint ci ratio: 4.707462e-02	ci left: 2.144795e-03	ci right 2.248505e-03	k: 6918	n:3150000
Cons ci ratio: 2.083339e-01	ci left: 1.006773e-04	ci right 1.243847e-04	k: 353	n:3150000
KS ci ratio: 1.034208e-02	ci left: 4.339344e-02	ci right 4.384486e-02	k: 137399	n:3150000
CSRNP3   3150000 perm   4855 sec   (649 perm/sec)   p_kst 4.361873e-02   p_cons 1.120635e-04   p_joint 2.196190e-03

Joint ci ratio: 4.695929e-02	ci left: 2.148640e-03	ci right 2.252275e-03	k: 6952	n:3160000
Cons ci ratio: 2.083339e-01	ci left: 1.003587e-04	ci right 1.239911e-04	k: 353	n:3160000
KS ci ratio: 1.032525e-02	ci left: 4.339753e-02	ci right 4.384825e-02	k: 137847	n:3160000
CSRNP3   3160000 perm   4884 sec   (647 perm/sec)   p_kst 4.362247e-02   p_cons 1.117089e-04   p_joint 2.200000e-03

Joint ci ratio: 4.688181e-02	ci left: 2.149033e-03	ci right 2.252511e-03	k: 6975	n:3170000
Cons ci ratio: 2.080403e-01	ci left: 1.003411e-04	ci right 1.239319e-04	k: 354	n:3170000
KS ci ratio: 1.030954e-02	ci left: 4.339309e-02	ci right 4.384308e-02	k: 138268	n:3170000
CSRNP3   3170000 perm   4913 sec   (645 perm/sec)   p_kst 4.361767e-02   p_cons 1.116719e-04   p_joint 2.200315e-03

Joint ci ratio: 4.679131e-02	ci left: 2.150666e-03	ci right 2.254017e-03	k: 7002	n:3180000
Cons ci ratio: 2.077479e-01	ci left: 1.003237e-04	ci right 1.238729e-04	k: 355	n:3180000
KS ci ratio: 1.029453e-02	ci left: 4.338366e-02	ci right 4.383289e-02	k: 138673	n:3180000
CSRNP3   3180000 perm   4942 sec   (643 perm/sec)   p_kst 4.360786e-02   p_cons 1.116352e-04   p_joint 2.201887e-03

Joint ci ratio: 4.779009e-02	ci left: 2.054397e-03	ci right 2.155288e-03	k: 6713	n:3190000
Cons ci ratio: 2.074568e-01	ci left: 1.003064e-04	ci right 1.238144e-04	k: 356	n:3190000
KS ci ratio: 1.027803e-02	ci left: 4.338680e-02	ci right 4.383534e-02	k: 139118	n:3190000
CSRNP3   3190000 perm   4971 sec   (642 perm/sec)   p_kst 4.361066e-02   p_cons 1.115987e-04   p_joint 2.104389e-03

Joint ci ratio: 4.828645e-02	ci left: 2.005678e-03	ci right 2.105227e-03	k: 6576	n:3200000
Cons ci ratio: 2.074568e-01	ci left: 9.999290e-05	ci right 1.234275e-04	k: 356	n:3200000
KS ci ratio: 1.026274e-02	ci left: 4.338088e-02	ci right 4.382869e-02	k: 139534	n:3200000
CSRNP3   3200000 perm   5000 sec   (640 perm/sec)   p_kst 4.360438e-02   p_cons 1.112500e-04   p_joint 2.055000e-03

Joint ci ratio: 4.819857e-02	ci left: 2.006816e-03	ci right 2.106235e-03	k: 6600	n:3210000
Cons ci ratio: 2.065905e-01	ci left: 1.005675e-04	ci right 1.240259e-04	k: 359	n:3210000
KS ci ratio: 1.024712e-02	ci left: 4.337811e-02	ci right 4.382520e-02	k: 139960	n:3210000
CSRNP3   3210000 perm   5029 sec   (638 perm/sec)   p_kst 4.360125e-02   p_cons 1.118380e-04   p_joint 2.056075e-03

Joint ci ratio: 4.811844e-02	ci left: 2.007334e-03	ci right 2.106609e-03	k: 6622	n:3220000
Cons ci ratio: 2.065906e-01	ci left: 1.002552e-04	ci right 1.236407e-04	k: 359	n:3220000
KS ci ratio: 1.023044e-02	ci left: 4.338465e-02	ci right 4.383108e-02	k: 140416	n:3220000
CSRNP3   3220000 perm   5061 sec   (636 perm/sec)   p_kst 4.360745e-02   p_cons 1.114907e-04   p_joint 2.056522e-03

Joint ci ratio: 4.804595e-02	ci left: 2.007236e-03	ci right 2.106353e-03	k: 6642	n:3230000
Cons ci ratio: 2.060190e-01	ci left: 1.005320e-04	ci right 1.239091e-04	k: 361	n:3230000
KS ci ratio: 1.021368e-02	ci left: 4.339238e-02	ci right 4.383816e-02	k: 140876	n:3230000
CSRNP3   3230000 perm   5091 sec   (634 perm/sec)   p_kst 4.361486e-02   p_cons 1.117647e-04   p_joint 2.056347e-03

Joint ci ratio: 4.796298e-02	ci left: 2.008055e-03	ci right 2.107036e-03	k: 6665	n:3240000
Cons ci ratio: 2.054523e-01	ci left: 1.008072e-04	ci right 1.241757e-04	k: 363	n:3240000
KS ci ratio: 1.019754e-02	ci left: 4.339576e-02	ci right 4.384086e-02	k: 141322	n:3240000
CSRNP3   3240000 perm   5120 sec   (633 perm/sec)   p_kst 4.361790e-02   p_cons 1.120370e-04   p_joint 2.057099e-03

Joint ci ratio: 4.786967e-02	ci left: 2.009780e-03	ci right 2.108649e-03	k: 6691	n:3250000
Cons ci ratio: 2.054523e-01	ci left: 1.004971e-04	ci right 1.237936e-04	k: 363	n:3250000
KS ci ratio: 1.018132e-02	ci left: 4.340034e-02	ci right 4.384478e-02	k: 141772	n:3250000
CSRNP3   3250000 perm   5150 sec   (631 perm/sec)   p_kst 4.362215e-02   p_cons 1.116923e-04   p_joint 2.058769e-03

Joint ci ratio: 4.778404e-02	ci left: 2.010889e-03	ci right 2.109630e-03	k: 6715	n:3260000
Cons ci ratio: 2.048901e-01	ci left: 1.007708e-04	ci right 1.240589e-04	k: 365	n:3260000
KS ci ratio: 1.016592e-02	ci left: 4.339878e-02	ci right 4.384252e-02	k: 142202	n:3260000
CSRNP3   3260000 perm   5181 sec   (629 perm/sec)   p_kst 4.362025e-02   p_cons 1.119632e-04   p_joint 2.059816e-03

Joint ci ratio: 4.769886e-02	ci left: 2.011992e-03	ci right 2.110606e-03	k: 6739	n:3270000
Cons ci ratio: 2.048902e-01	ci left: 1.004626e-04	ci right 1.236795e-04	k: 365	n:3270000
KS ci ratio: 1.015060e-02	ci left: 4.339723e-02	ci right 4.384028e-02	k: 142632	n:3270000
CSRNP3   3270000 perm   5211 sec   (627 perm/sec)   p_kst 4.361835e-02   p_cons 1.116208e-04   p_joint 2.060856e-03

Joint ci ratio: 4.763532e-02	ci left: 2.011280e-03	ci right 2.109724e-03	k: 6757	n:3280000
Cons ci ratio: 2.046109e-01	ci left: 1.004456e-04	ci right 1.236229e-04	k: 366	n:3280000
KS ci ratio: 1.013515e-02	ci left: 4.339720e-02	ci right 4.383958e-02	k: 143067	n:3280000
CSRNP3   3280000 perm   5242 sec   (626 perm/sec)   p_kst 4.361799e-02   p_cons 1.115854e-04   p_joint 2.060061e-03

Joint ci ratio: 4.758258e-02	ci left: 2.009672e-03	ci right 2.107925e-03	k: 6772	n:3290000
Cons ci ratio: 2.043327e-01	ci left: 1.004286e-04	ci right 1.235666e-04	k: 367	n:3290000
KS ci ratio: 1.011978e-02	ci left: 4.339718e-02	ci right 4.383888e-02	k: 143502	n:3290000
CSRNP3   3290000 perm   5272 sec   (624 perm/sec)   p_kst 4.361763e-02   p_cons 1.115502e-04   p_joint 2.058359e-03

Joint ci ratio: 4.770995e-02	ci left: 1.992802e-03	ci right 2.090499e-03	k: 6736	n:3300000
Cons ci ratio: 2.043327e-01	ci left: 1.001243e-04	ci right 1.231922e-04	k: 367	n:3300000
KS ci ratio: 1.010540e-02	ci left: 4.338960e-02	ci right 4.383059e-02	k: 143912	n:3300000
CSRNP3   3300000 perm   5303 sec   (622 perm/sec)   p_kst 4.360970e-02   p_cons 1.112121e-04   p_joint 2.041212e-03

Joint ci ratio: 4.762517e-02	ci left: 1.993946e-03	ci right 2.091521e-03	k: 6760	n:3310000
Cons ci ratio: 2.035048e-01	ci left: 1.006819e-04	ci right 1.237726e-04	k: 370	n:3310000
KS ci ratio: 1.008859e-02	ci left: 4.340256e-02	ci right 4.384295e-02	k: 144390	n:3310000
CSRNP3   3310000 perm   5333 sec   (621 perm/sec)   p_kst 4.362236e-02   p_cons 1.117825e-04   p_joint 2.042296e-03

Joint ci ratio: 4.754084e-02	ci left: 1.995083e-03	ci right 2.092536e-03	k: 6784	n:3320000
Cons ci ratio: 2.035049e-01	ci left: 1.003786e-04	ci right 1.233997e-04	k: 370	n:3320000
KS ci ratio: 1.007369e-02	ci left: 4.340042e-02	ci right 4.384013e-02	k: 144818	n:3320000
CSRNP3   3320000 perm   5364 sec   (619 perm/sec)   p_kst 4.361988e-02   p_cons 1.114458e-04   p_joint 2.043373e-03

Joint ci ratio: 4.760078e-02	ci left: 1.984047e-03	ci right 2.081086e-03	k: 6767	n:3330000
Cons ci ratio: 2.032311e-01	ci left: 1.003622e-04	ci right 1.233448e-04	k: 371	n:3330000
KS ci ratio: 1.005819e-02	ci left: 4.340369e-02	ci right 4.384275e-02	k: 145264	n:3330000
CSRNP3   3330000 perm   5395 sec   (617 perm/sec)   p_kst 4.362282e-02   p_cons 1.114114e-04   p_joint 2.032132e-03

Joint ci ratio: 4.754113e-02	ci left: 1.983136e-03	ci right 2.080006e-03	k: 6784	n:3340000
Cons ci ratio: 2.024165e-01	ci left: 1.009143e-04	ci right 1.239192e-04	k: 374	n:3340000
KS ci ratio: 1.004274e-02	ci left: 4.340723e-02	ci right 4.384565e-02	k: 145711	n:3340000
CSRNP3   3340000 perm   5426 sec   (616 perm/sec)   p_kst 4.362605e-02   p_cons 1.119760e-04   p_joint 2.031138e-03

Joint ci ratio: 4.670047e-02	ci left: 2.049786e-03	ci right 2.148093e-03	k: 7030	n:3350000
Cons ci ratio: 2.021472e-01	ci left: 1.008965e-04	ci right 1.238629e-04	k: 375	n:3350000
KS ci ratio: 1.002832e-02	ci left: 4.340272e-02	ci right 4.384046e-02	k: 146131	n:3350000
CSRNP3   3350000 perm   5456 sec   (614 perm/sec)   p_kst 4.362119e-02   p_cons 1.119403e-04   p_joint 2.098507e-03

Joint ci ratio: 4.662426e-02	ci left: 2.050451e-03	ci right 2.148625e-03	k: 7053	n:3360000
Cons ci ratio: 2.013455e-01	ci left: 1.014439e-04	ci right 1.244322e-04	k: 378	n:3360000
KS ci ratio: 1.001332e-02	ci left: 4.340357e-02	ci right 4.384066e-02	k: 146569	n:3360000
CSRNP3   3360000 perm   5487 sec   (612 perm/sec)   p_kst 4.362173e-02   p_cons 1.125000e-04   p_joint 2.099107e-03

Joint ci ratio: 4.687142e-02	ci left: 2.022664e-03	ci right 2.120035e-03	k: 6979	n:3370000
Cons ci ratio: 2.013455e-01	ci left: 1.011429e-04	ci right 1.240629e-04	k: 378	n:3370000
KS ci ratio: 9.999068e-03	ci left: 4.339880e-02	ci right 4.383522e-02	k: 146988	n:3370000
CSRNP3   3370000 perm   5518 sec   (611 perm/sec)   p_kst 4.361662e-02   p_cons 1.121662e-04   p_joint 2.070920e-03

Joint ci ratio: 4.678767e-02	ci left: 2.023989e-03	ci right 2.121246e-03	k: 7004	n:3380000
Cons ci ratio: 2.010804e-01	ci left: 1.011246e-04	ci right 1.240066e-04	k: 379	n:3380000
KS ci ratio: 9.984626e-03	ci left: 4.339612e-02	ci right 4.383188e-02	k: 147414	n:3380000
CSRNP3   3380000 perm   5550 sec   (609 perm/sec)   p_kst 4.361361e-02   p_cons 1.121302e-04   p_joint 2.072189e-03

Joint ci ratio: 5.020302e-02	ci left: 1.750204e-03	ci right 1.840621e-03	k: 6085	n:3390000
Cons ci ratio: 2.008164e-01	ci left: 1.011065e-04	ci right 1.239506e-04	k: 380	n:3390000
KS ci ratio: 9.968413e-03	ci left: 4.340876e-02	ci right 4.384393e-02	k: 147892	n:3390000
CSRNP3   3390000 perm   5582 sec   (607 perm/sec)   p_kst 4.362596e-02   p_cons 1.120944e-04   p_joint 1.794985e-03

Joint ci ratio: 5.012894e-02	ci left: 1.750284e-03	ci right 1.840568e-03	k: 6103	n:3400000
Cons ci ratio: 2.005534e-01	ci left: 1.010884e-04	ci right 1.238950e-04	k: 381	n:3400000
KS ci ratio: 9.953331e-03	ci left: 4.341253e-02	ci right 4.384707e-02	k: 148340	n:3400000
CSRNP3   3400000 perm   5613 sec   (606 perm/sec)   p_kst 4.362941e-02   p_cons 1.120588e-04   p_joint 1.795000e-03

Joint ci ratio: 5.007568e-02	ci left: 1.748916e-03	ci right 1.839030e-03	k: 6116	n:3410000
Cons ci ratio: 2.005534e-01	ci left: 1.007920e-04	ci right 1.235316e-04	k: 381	n:3410000
KS ci ratio: 9.938457e-03	ci left: 4.341510e-02	ci right 4.384902e-02	k: 148784	n:3410000
CSRNP3   3410000 perm   5645 sec   (604 perm/sec)   p_kst 4.363167e-02   p_cons 1.117302e-04   p_joint 1.793548e-03

Joint ci ratio: 5.000625e-02	ci left: 1.748711e-03	ci right 1.838686e-03	k: 6133	n:3420000
Cons ci ratio: 2.002914e-01	ci left: 1.007750e-04	ci right 1.234775e-04	k: 382	n:3420000
KS ci ratio: 9.923580e-03	ci left: 4.341824e-02	ci right 4.385154e-02	k: 149230	n:3420000
CSRNP3   3420000 perm   5675 sec   (603 perm/sec)   p_kst 4.363450e-02   p_cons 1.116959e-04   p_joint 1.793275e-03

Joint ci ratio: 4.994524e-02	ci left: 1.747931e-03	ci right 1.837753e-03	k: 6148	n:3430000
Cons ci ratio: 1.997705e-01	ci left: 1.010351e-04	ci right 1.237297e-04	k: 384	n:3430000
KS ci ratio: 9.909427e-03	ci left: 4.341584e-02	ci right 4.384849e-02	k: 149657	n:3430000
CSRNP3   3430000 perm   5707 sec   (601 perm/sec)   p_kst 4.363178e-02   p_cons 1.119534e-04   p_joint 1.792420e-03

Joint ci ratio: 4.996980e-02	ci left: 1.741127e-03	ci right 1.830645e-03	k: 6142	n:3440000
Cons ci ratio: 1.997705e-01	ci left: 1.007414e-04	ci right 1.233701e-04	k: 384	n:3440000
KS ci ratio: 9.895610e-03	ci left: 4.341113e-02	ci right 4.384313e-02	k: 150076	n:3440000
CSRNP3   3440000 perm   5738 sec   (599 perm/sec)   p_kst 4.362674e-02   p_cons 1.116279e-04   p_joint 1.785465e-03

Joint ci ratio: 4.988864e-02	ci left: 1.741805e-03	ci right 1.831208e-03	k: 6162	n:3450000
Cons ci ratio: 1.989966e-01	ci left: 1.012755e-04	ci right 1.239254e-04	k: 387	n:3450000
KS ci ratio: 9.880993e-03	ci left: 4.341368e-02	ci right 4.384506e-02	k: 150520	n:3450000
CSRNP3   3450000 perm   5770 sec   (598 perm/sec)   p_kst 4.362899e-02   p_cons 1.121739e-04   p_joint 1.786087e-03

Joint ci ratio: 4.983210e-02	ci left: 1.740767e-03	ci right 1.830013e-03	k: 6176	n:3460000
Cons ci ratio: 1.987407e-01	ci left: 1.012574e-04	ci right 1.238706e-04	k: 388	n:3460000
KS ci ratio: 9.865996e-03	ci left: 4.341996e-02	ci right 4.385075e-02	k: 150977	n:3460000
CSRNP3   3460000 perm   5801 sec   (596 perm/sec)   p_kst 4.363497e-02   p_cons 1.121387e-04   p_joint 1.784971e-03

Joint ci ratio: 4.975161e-02	ci left: 1.741442e-03	ci right 1.830574e-03	k: 6196	n:3470000
Cons ci ratio: 1.987407e-01	ci left: 1.009656e-04	ci right 1.235136e-04	k: 388	n:3470000
KS ci ratio: 9.852496e-03	ci left: 4.341413e-02	ci right 4.384427e-02	k: 151392	n:3470000
CSRNP3   3470000 perm   5832 sec   (595 perm/sec)   p_kst 4.362882e-02   p_cons 1.118156e-04   p_joint 1.785591e-03

Joint ci ratio: 4.967150e-02	ci left: 1.742114e-03	ci right 1.831132e-03	k: 6216	n:3480000
Cons ci ratio: 1.987408e-01	ci left: 1.006755e-04	ci right 1.231587e-04	k: 388	n:3480000
KS ci ratio: 9.838916e-03	ci left: 4.340948e-02	ci right 4.383898e-02	k: 151811	n:3480000
CSRNP3   3480000 perm   5864 sec   (593 perm/sec)   p_kst 4.362385e-02   p_cons 1.114943e-04   p_joint 1.786207e-03

Joint ci ratio: 4.959178e-02	ci left: 1.742781e-03	ci right 1.831687e-03	k: 6236	n:3490000
Cons ci ratio: 1.987408e-01	ci left: 1.003870e-04	ci right 1.228058e-04	k: 388	n:3490000
KS ci ratio: 9.824582e-03	ci left: 4.341172e-02	ci right 4.384061e-02	k: 152254	n:3490000
CSRNP3   3490000 perm   5896 sec   (592 perm/sec)   p_kst 4.362579e-02   p_cons 1.111748e-04   p_joint 1.786819e-03

Joint ci ratio: 4.952831e-02	ci left: 1.742317e-03	ci right 1.831082e-03	k: 6252	n:3500000
Cons ci ratio: 1.987408e-01	ci left: 1.001002e-04	ci right 1.224549e-04	k: 388	n:3500000
KS ci ratio: 9.809841e-03	ci left: 4.341794e-02	ci right 4.384624e-02	k: 152711	n:3500000
CSRNP3   3500000 perm   5928 sec   (590 perm/sec)   p_kst 4.363171e-02   p_cons 1.108571e-04   p_joint 1.786286e-03

Joint ci ratio: 4.945322e-02	ci left: 1.742699e-03	ci right 1.831345e-03	k: 6271	n:3510000
Cons ci ratio: 1.987408e-01	ci left: 9.981502e-05	ci right 1.221061e-04	k: 388	n:3510000
KS ci ratio: 9.795232e-03	ci left: 4.342356e-02	ci right 4.385127e-02	k: 153166	n:3510000
CSRNP3   3510000 perm   5960 sec   (589 perm/sec)   p_kst 4.363704e-02   p_cons 1.105413e-04   p_joint 1.786610e-03

Joint ci ratio: 4.937455e-02	ci left: 1.743360e-03	ci right 1.831895e-03	k: 6291	n:3520000
Cons ci ratio: 1.987409e-01	ci left: 9.953145e-05	ci right 1.217592e-04	k: 388	n:3520000
KS ci ratio: 9.781620e-03	ci left: 4.342120e-02	ci right 4.384830e-02	k: 153593	n:3520000
CSRNP3   3520000 perm   5992 sec   (587 perm/sec)   p_kst 4.363438e-02   p_cons 1.102273e-04   p_joint 1.787216e-03

Joint ci ratio: 4.930016e-02	ci left: 1.743737e-03	ci right 1.832154e-03	k: 6310	n:3530000
Cons ci ratio: 1.984859e-01	ci left: 9.951869e-05	ci right 1.217116e-04	k: 389	n:3530000
KS ci ratio: 9.768065e-03	ci left: 4.341887e-02	ci right 4.384534e-02	k: 154020	n:3530000
CSRNP3   3530000 perm   6025 sec   (586 perm/sec)   p_kst 4.363173e-02   p_cons 1.101983e-04   p_joint 1.787535e-03

Joint ci ratio: 4.901710e-02	ci left: 1.759180e-03	ci right 1.847853e-03	k: 6383	n:3540000
Cons ci ratio: 1.977268e-01	ci left: 1.000430e-04	ci right 1.222572e-04	k: 392	n:3540000
KS ci ratio: 9.755095e-03	ci left: 4.341203e-02	ci right 4.383787e-02	k: 154431	n:3540000
CSRNP3   3540000 perm   6057 sec   (584 perm/sec)   p_kst 4.362458e-02   p_cons 1.107345e-04   p_joint 1.803107e-03

Joint ci ratio: 4.895964e-02	ci left: 1.758398e-03	ci right 1.846925e-03	k: 6398	n:3550000
Cons ci ratio: 1.977269e-01	ci left: 9.976118e-05	ci right 1.219128e-04	k: 392	n:3550000
KS ci ratio: 9.740894e-03	ci left: 4.341620e-02	ci right 4.384145e-02	k: 154881	n:3550000
CSRNP3   3550000 perm   6090 sec   (583 perm/sec)   p_kst 4.362845e-02   p_cons 1.104225e-04   p_joint 1.802254e-03

Joint ci ratio: 4.891384e-02	ci left: 1.756788e-03	ci right 1.845149e-03	k: 6410	n:3560000
Cons ci ratio: 1.977269e-01	ci left: 9.948095e-05	ci right 1.215704e-04	k: 392	n:3560000
KS ci ratio: 9.728391e-03	ci left: 4.340632e-02	ci right 4.383093e-02	k: 155281	n:3560000
CSRNP3   3560000 perm   6122 sec   (582 perm/sec)   p_kst 4.361826e-02   p_cons 1.101124e-04   p_joint 1.800562e-03

Joint ci ratio: 4.884531e-02	ci left: 1.756848e-03	ci right 1.845084e-03	k: 6428	n:3570000
Cons ci ratio: 1.977269e-01	ci left: 9.920229e-05	ci right 1.212299e-04	k: 392	n:3570000
KS ci ratio: 9.715448e-03	ci left: 4.340070e-02	ci right 4.382469e-02	k: 155696	n:3570000
CSRNP3   3570000 perm   6154 sec   (580 perm/sec)   p_kst 4.361232e-02   p_cons 1.098039e-04   p_joint 1.800560e-03

Joint ci ratio: 4.879224e-02	ci left: 1.755803e-03	ci right 1.843889e-03	k: 6442	n:3580000
Cons ci ratio: 1.977270e-01	ci left: 9.892519e-05	ci right 1.208912e-04	k: 392	n:3580000
KS ci ratio: 9.702295e-03	ci left: 4.339734e-02	ci right 4.382072e-02	k: 156119	n:3580000
CSRNP3   3580000 perm   6187 sec   (579 perm/sec)   p_kst 4.360866e-02   p_cons 1.094972e-04   p_joint 1.799441e-03

Joint ci ratio: 4.872801e-02	ci left: 1.755590e-03	ci right 1.843545e-03	k: 6459	n:3590000
Cons ci ratio: 1.977270e-01	ci left: 9.864963e-05	ci right 1.205545e-04	k: 392	n:3590000
KS ci ratio: 9.689455e-03	ci left: 4.339177e-02	ci right 4.381453e-02	k: 156534	n:3590000
CSRNP3   3590000 perm   6220 sec   (577 perm/sec)   p_kst 4.360279e-02   p_cons 1.091922e-04   p_joint 1.799164e-03

Joint ci ratio: 4.866402e-02	ci left: 1.755378e-03	ci right 1.843204e-03	k: 6476	n:3600000
Cons ci ratio: 1.972258e-01	ci left: 9.890369e-05	ci right 1.208026e-04	k: 394	n:3600000
KS ci ratio: 9.676860e-03	ci left: 4.338458e-02	ci right 4.380671e-02	k: 156943	n:3600000
CSRNP3   3600000 perm   6253 sec   (576 perm/sec)   p_kst 4.359528e-02   p_cons 1.094444e-04   p_joint 1.798889e-03

Joint ci ratio: 4.861154e-02	ci left: 1.754346e-03	ci right 1.842024e-03	k: 6490	n:3610000
Cons ci ratio: 1.969766e-01	ci left: 9.889306e-05	ci right 1.207586e-04	k: 395	n:3610000
KS ci ratio: 9.662933e-03	ci left: 4.338930e-02	ci right 4.381088e-02	k: 157395	n:3610000
CSRNP3   3610000 perm   6287 sec   (574 perm/sec)   p_kst 4.359972e-02   p_cons 1.094183e-04   p_joint 1.797784e-03

Joint ci ratio: 4.852188e-02	ci left: 1.756049e-03	ci right 1.843646e-03	k: 6514	n:3620000
Cons ci ratio: 1.955009e-01	ci left: 1.001959e-04	ci right 1.221638e-04	k: 401	n:3620000
KS ci ratio: 9.649481e-03	ci left: 4.339042e-02	ci right 4.381141e-02	k: 157834	n:3620000
CSRNP3   3620000 perm   6320 sec   (573 perm/sec)   p_kst 4.360055e-02   p_cons 1.107735e-04   p_joint 1.799448e-03

Joint ci ratio: 4.844014e-02	ci left: 1.757199e-03	ci right 1.844701e-03	k: 6536	n:3630000
Cons ci ratio: 1.955010e-01	ci left: 9.991988e-05	ci right 1.218273e-04	k: 401	n:3630000
KS ci ratio: 9.637486e-03	ci left: 4.337944e-02	ci right 4.379980e-02	k: 158229	n:3630000
CSRNP3   3630000 perm   6353 sec   (571 perm/sec)   p_kst 4.358926e-02   p_cons 1.104683e-04   p_joint 1.800551e-03

Joint ci ratio: 4.838838e-02	ci left: 1.756171e-03	ci right 1.843526e-03	k: 6550	n:3640000
Cons ci ratio: 1.950164e-01	ci left: 1.001680e-04	ci right 1.220689e-04	k: 403	n:3640000
KS ci ratio: 9.624616e-03	ci left: 4.337647e-02	ci right 4.379624e-02	k: 158653	n:3640000
CSRNP3   3640000 perm   6387 sec   (570 perm/sec)   p_kst 4.358599e-02   p_cons 1.107143e-04   p_joint 1.799451e-03

Joint ci ratio: 4.830362e-02	ci left: 1.757585e-03	ci right 1.844852e-03	k: 6573	n:3650000
Cons ci ratio: 1.942963e-01	ci left: 1.006754e-04	ci right 1.225964e-04	k: 406	n:3650000
KS ci ratio: 9.610597e-03	ci left: 4.338390e-02	ci right 4.380312e-02	k: 159115	n:3650000
CSRNP3   3650000 perm   6421 sec   (568 perm/sec)   p_kst 4.359315e-02   p_cons 1.112329e-04   p_joint 1.800822e-03

Joint ci ratio: 4.822297e-02	ci left: 1.758721e-03	ci right 1.845895e-03	k: 6595	n:3660000
Cons ci ratio: 1.940581e-01	ci left: 1.006603e-04	ci right 1.225479e-04	k: 407	n:3660000
KS ci ratio: 9.597079e-03	ci left: 4.338748e-02	ci right 4.380614e-02	k: 159563	n:3660000
CSRNP3   3660000 perm   6454 sec   (567 perm/sec)   p_kst 4.359645e-02   p_cons 1.112022e-04   p_joint 1.801913e-03

Joint ci ratio: 4.581875e-02	ci left: 1.944851e-03	ci right 2.036319e-03	k: 7304	n:3670000
Cons ci ratio: 1.938207e-01	ci left: 1.006452e-04	ci right 1.224997e-04	k: 408	n:3670000
KS ci ratio: 9.583086e-03	ci left: 4.339565e-02	ci right 4.381379e-02	k: 160028	n:3670000
CSRNP3   3670000 perm   6487 sec   (566 perm/sec)   p_kst 4.360436e-02   p_cons 1.111717e-04   p_joint 1.990191e-03

Joint ci ratio: 4.575616e-02	ci left: 1.944939e-03	ci right 2.036282e-03	k: 7324	n:3680000
Cons ci ratio: 1.933485e-01	ci left: 1.008889e-04	ci right 1.227366e-04	k: 410	n:3680000
KS ci ratio: 9.570557e-03	ci left: 4.339159e-02	ci right 4.380913e-02	k: 160448	n:3680000
CSRNP3   3680000 perm   6520 sec   (564 perm/sec)   p_kst 4.360000e-02   p_cons 1.114130e-04   p_joint 1.990217e-03

Joint ci ratio: 4.567513e-02	ci left: 1.946634e-03	ci right 2.037890e-03	k: 7350	n:3690000
Cons ci ratio: 1.933485e-01	ci left: 1.006155e-04	ci right 1.224039e-04	k: 410	n:3690000
KS ci ratio: 9.557115e-03	ci left: 4.339593e-02	ci right 4.381292e-02	k: 160899	n:3690000
CSRNP3   3690000 perm   6553 sec   (563 perm/sec)   p_kst 4.360407e-02   p_cons 1.111111e-04   p_joint 1.991870e-03

Joint ci ratio: 4.560382e-02	ci left: 1.947518e-03	ci right 2.038670e-03	k: 7373	n:3700000
Cons ci ratio: 1.928798e-01	ci left: 1.008580e-04	ci right 1.226398e-04	k: 412	n:3700000
KS ci ratio: 9.544532e-03	ci left: 4.339323e-02	ci right 4.380965e-02	k: 161324	n:3700000
CSRNP3   3700000 perm   6587 sec   (562 perm/sec)   p_kst 4.360108e-02   p_cons 1.113514e-04   p_joint 1.992703e-03

Joint ci ratio: 4.552052e-02	ci left: 1.949463e-03	ci right 2.040535e-03	k: 7400	n:3710000
Cons ci ratio: 1.928798e-01	ci left: 1.005861e-04	ci right 1.223092e-04	k: 412	n:3710000
KS ci ratio: 9.532092e-03	ci left: 4.338974e-02	ci right 4.380558e-02	k: 161746	n:3710000
CSRNP3   3710000 perm   6621 sec   (560 perm/sec)   p_kst 4.359730e-02   p_cons 1.110512e-04   p_joint 1.994609e-03

Joint ci ratio: 4.545607e-02	ci left: 1.949804e-03	ci right 2.040759e-03	k: 7421	n:3720000
Cons ci ratio: 1.921830e-01	ci left: 1.010833e-04	ci right 1.228257e-04	k: 415	n:3720000
KS ci ratio: 9.519455e-03	ci left: 4.338842e-02	ci right 4.380369e-02	k: 162176	n:3720000
CSRNP3   3720000 perm   6655 sec   (559 perm/sec)   p_kst 4.359570e-02   p_cons 1.115591e-04   p_joint 1.994892e-03

Joint ci ratio: 4.539189e-02	ci left: 1.950143e-03	ci right 2.040982e-03	k: 7442	n:3730000
Cons ci ratio: 1.919525e-01	ci left: 1.010675e-04	ci right 1.227774e-04	k: 416	n:3730000
KS ci ratio: 9.506654e-03	ci left: 4.338898e-02	ci right 4.380369e-02	k: 162613	n:3730000
CSRNP3   3730000 perm   6689 sec   (558 perm/sec)   p_kst 4.359598e-02   p_cons 1.115282e-04   p_joint 1.995174e-03

Joint ci ratio: 4.532190e-02	ci left: 1.951008e-03	ci right 2.041744e-03	k: 7465	n:3740000
Cons ci ratio: 1.917227e-01	ci left: 1.010518e-04	ci right 1.227293e-04	k: 417	n:3740000
KS ci ratio: 9.494239e-03	ci left: 4.338660e-02	ci right 4.380074e-02	k: 163039	n:3740000
CSRNP3   3740000 perm   6722 sec   (556 perm/sec)   p_kst 4.359332e-02   p_cons 1.114973e-04   p_joint 1.995989e-03

Joint ci ratio: 4.527344e-02	ci left: 1.950024e-03	ci right 2.040614e-03	k: 7481	n:3750000
Cons ci ratio: 1.917228e-01	ci left: 1.007823e-04	ci right 1.224020e-04	k: 417	n:3750000
KS ci ratio: 9.482389e-03	ci left: 4.337971e-02	ci right 4.379327e-02	k: 163448	n:3750000
CSRNP3   3750000 perm   6756 sec   (555 perm/sec)   p_kst 4.358613e-02   p_cons 1.112000e-04   p_joint 1.994933e-03

Joint ci ratio: 4.419182e-02	ci left: 2.042144e-03	ci right 2.134690e-03	k: 7851	n:3760000
Cons ci ratio: 1.914938e-01	ci left: 1.007675e-04	ci right 1.223552e-04	k: 418	n:3760000
KS ci ratio: 9.469193e-03	ci left: 4.338506e-02	ci right 4.379809e-02	k: 163903	n:3760000
CSRNP3   3760000 perm   6790 sec   (554 perm/sec)   p_kst 4.359122e-02   p_cons 1.111702e-04   p_joint 2.088032e-03

Joint ci ratio: 4.509287e-02	ci left: 1.955414e-03	ci right 2.045884e-03	k: 7541	n:3770000
Cons ci ratio: 1.910384e-01	ci left: 1.010053e-04	ci right 1.225865e-04	k: 420	n:3770000
KS ci ratio: 9.456563e-03	ci left: 4.338588e-02	ci right 4.379837e-02	k: 164341	n:3770000
CSRNP3   3770000 perm   6823 sec   (553 perm/sec)   p_kst 4.359178e-02   p_cons 1.114058e-04   p_joint 2.000265e-03

Joint ci ratio: 4.503022e-02	ci left: 1.955734e-03	ci right 2.046089e-03	k: 7562	n:3780000
Cons ci ratio: 1.905862e-01	ci left: 1.012419e-04	ci right 1.228165e-04	k: 422	n:3780000
KS ci ratio: 9.444733e-03	ci left: 4.338011e-02	ci right 4.379202e-02	k: 164754	n:3780000
CSRNP3   3780000 perm   6857 sec   (551 perm/sec)   p_kst 4.358571e-02   p_cons 1.116402e-04   p_joint 2.000529e-03

Joint ci ratio: 4.496486e-02	ci left: 1.956314e-03	ci right 2.046561e-03	k: 7584	n:3790000
Cons ci ratio: 1.901372e-01	ci left: 1.014774e-04	ci right 1.230453e-04	k: 424	n:3790000
KS ci ratio: 9.431604e-03	ci left: 4.338621e-02	ci right 4.379760e-02	k: 165212	n:3790000
CSRNP3   3790000 perm   6891 sec   (550 perm/sec)   p_kst 4.359156e-02   p_cons 1.118734e-04   p_joint 2.001055e-03

Joint ci ratio: 4.490273e-02	ci left: 1.956630e-03	ci right 2.046763e-03	k: 7605	n:3800000
Cons ci ratio: 1.896914e-01	ci left: 1.017116e-04	ci right 1.232728e-04	k: 426	n:3800000
KS ci ratio: 9.418975e-03	ci left: 4.338834e-02	ci right 4.379920e-02	k: 165655	n:3800000
CSRNP3   3800000 perm   6926 sec   (549 perm/sec)   p_kst 4.359342e-02   p_cons 1.121053e-04   p_joint 2.001316e-03

Joint ci ratio: 4.484381e-02	ci left: 1.956685e-03	ci right 2.046700e-03	k: 7625	n:3810000
Cons ci ratio: 1.894697e-01	ci left: 1.016947e-04	ci right 1.232242e-04	k: 427	n:3810000
KS ci ratio: 9.406752e-03	ci left: 4.338731e-02	ci right 4.379763e-02	k: 166086	n:3810000
CSRNP3   3810000 perm   6961 sec   (547 perm/sec)   p_kst 4.359213e-02   p_cons 1.120735e-04   p_joint 2.001312e-03

Joint ci ratio: 4.676318e-02	ci left: 1.793183e-03	ci right 1.879302e-03	k: 7013	n:3820000
Cons ci ratio: 1.888091e-01	ci left: 1.021766e-04	ci right 1.237241e-04	k: 430	n:3820000
KS ci ratio: 9.393692e-03	ci left: 4.339413e-02	ci right 4.380394e-02	k: 166547	n:3820000
CSRNP3   3820000 perm   6996 sec   (546 perm/sec)   p_kst 4.359869e-02   p_cons 1.125654e-04   p_joint 1.835864e-03

Joint ci ratio: 4.669664e-02	ci left: 1.793662e-03	ci right 1.879679e-03	k: 7033	n:3830000
Cons ci ratio: 1.881553e-01	ci left: 1.026561e-04	ci right 1.242212e-04	k: 433	n:3830000
KS ci ratio: 9.381244e-03	ci left: 4.339597e-02	ci right 4.380525e-02	k: 166989	n:3830000
CSRNP3   3830000 perm   7031 sec   (545 perm/sec)   p_kst 4.360026e-02   p_cons 1.130548e-04   p_joint 1.836292e-03

Joint ci ratio: 4.671339e-02	ci left: 1.787704e-03	ci right 1.873466e-03	k: 7028	n:3840000
Cons ci ratio: 1.875083e-01	ci left: 1.031333e-04	ci right 1.247157e-04	k: 436	n:3840000
KS ci ratio: 9.369372e-03	ci left: 4.339311e-02	ci right 4.380185e-02	k: 167413	n:3840000
CSRNP3   3840000 perm   7066 sec   (543 perm/sec)   p_kst 4.359714e-02   p_cons 1.135417e-04   p_joint 1.830208e-03

Joint ci ratio: 4.665701e-02	ci left: 1.787425e-03	ci right 1.873067e-03	k: 7045	n:3850000
Cons ci ratio: 1.875084e-01	ci left: 1.028655e-04	ci right 1.243918e-04	k: 436	n:3850000
KS ci ratio: 9.356118e-03	ci left: 4.340297e-02	ci right 4.381122e-02	k: 167886	n:3850000
CSRNP3   3850000 perm   7100 sec   (542 perm/sec)   p_kst 4.360675e-02   p_cons 1.132468e-04   p_joint 1.829870e-03

Joint ci ratio: 4.667372e-02	ci left: 1.781514e-03	ci right 1.866905e-03	k: 7040	n:3860000
Cons ci ratio: 1.868680e-01	ci left: 1.033397e-04	ci right 1.248831e-04	k: 439	n:3860000
KS ci ratio: 9.343644e-03	ci left: 4.340632e-02	ci right 4.381405e-02	k: 168334	n:3860000
CSRNP3   3860000 perm   7135 sec   (541 perm/sec)   p_kst 4.360984e-02   p_cons 1.137306e-04   p_joint 1.823834e-03

Joint ci ratio: 4.662079e-02	ci left: 1.780997e-03	ci right 1.866263e-03	k: 7056	n:3870000
Cons ci ratio: 1.868680e-01	ci left: 1.030727e-04	ci right 1.245604e-04	k: 439	n:3870000
KS ci ratio: 9.331481e-03	ci left: 4.340733e-02	ci right 4.381454e-02	k: 168773	n:3870000
CSRNP3   3870000 perm   7170 sec   (540 perm/sec)   p_kst 4.361059e-02   p_cons 1.134367e-04   p_joint 1.823256e-03

Joint ci ratio: 4.654168e-02	ci left: 1.782520e-03	ci right 1.867711e-03	k: 7080	n:3880000
Cons ci ratio: 1.868680e-01	ci left: 1.028071e-04	ci right 1.242394e-04	k: 439	n:3880000
KS ci ratio: 9.319048e-03	ci left: 4.341117e-02	ci right 4.381786e-02	k: 169223	n:3880000
CSRNP3   3880000 perm   7205 sec   (539 perm/sec)   p_kst 4.361418e-02   p_cons 1.131443e-04   p_joint 1.824742e-03

Joint ci ratio: 4.648264e-02	ci left: 1.782511e-03	ci right 1.867590e-03	k: 7098	n:3890000
Cons ci ratio: 1.864448e-01	ci left: 1.030329e-04	ci right 1.244581e-04	k: 441	n:3890000
KS ci ratio: 9.307152e-03	ci left: 4.341062e-02	ci right 4.381679e-02	k: 169656	n:3890000
CSRNP3   3890000 perm   7240 sec   (537 perm/sec)   p_kst 4.361337e-02   p_cons 1.133676e-04   p_joint 1.824679e-03

Joint ci ratio: 4.641729e-02	ci left: 1.783009e-03	ci right 1.867990e-03	k: 7118	n:3900000
Cons ci ratio: 1.860244e-01	ci left: 1.032576e-04	ci right 1.246757e-04	k: 443	n:3900000
KS ci ratio: 9.295902e-03	ci left: 4.340471e-02	ci right 4.381033e-02	k: 170068	n:3900000
CSRNP3   3900000 perm   7275 sec   (536 perm/sec)   p_kst 4.360718e-02   p_cons 1.135897e-04   p_joint 1.825128e-03

Joint ci ratio: 4.635221e-02	ci left: 1.783505e-03	ci right 1.868386e-03	k: 7138	n:3910000
Cons ci ratio: 1.856068e-01	ci left: 1.034813e-04	ci right 1.248921e-04	k: 445	n:3910000
KS ci ratio: 9.283127e-03	ci left: 4.341286e-02	ci right 4.381799e-02	k: 170535	n:3910000
CSRNP3   3910000 perm   7311 sec   (535 perm/sec)   p_kst 4.361509e-02   p_cons 1.138107e-04   p_joint 1.825575e-03

Joint ci ratio: 4.627123e-02	ci left: 1.785259e-03	ci right 1.870071e-03	k: 7163	n:3920000
Cons ci ratio: 1.856068e-01	ci left: 1.032173e-04	ci right 1.245735e-04	k: 445	n:3920000
KS ci ratio: 9.271793e-03	ci left: 4.340850e-02	ci right 4.381309e-02	k: 170953	n:3920000
CSRNP3   3920000 perm   7346 sec   (534 perm/sec)   p_kst 4.361046e-02   p_cons 1.135204e-04   p_joint 1.827296e-03

Joint ci ratio: 4.621321e-02	ci left: 1.785243e-03	ci right 1.869946e-03	k: 7181	n:3930000
Cons ci ratio: 1.856068e-01	ci left: 1.029546e-04	ci right 1.242565e-04	k: 445	n:3930000
KS ci ratio: 9.259202e-03	ci left: 4.341584e-02	ci right 4.381995e-02	k: 171417	n:3930000
CSRNP3   3930000 perm   7381 sec   (532 perm/sec)   p_kst 4.361756e-02   p_cons 1.132316e-04   p_joint 1.827226e-03

Joint ci ratio: 4.615862e-02	ci left: 1.784977e-03	ci right 1.869565e-03	k: 7198	n:3940000
Cons ci ratio: 1.841671e-01	ci left: 1.043878e-04	ci right 1.257999e-04	k: 452	n:3940000
KS ci ratio: 9.247140e-03	ci left: 4.341883e-02	ci right 4.382245e-02	k: 171864	n:3940000
CSRNP3   3940000 perm   7417 sec   (531 perm/sec)   p_kst 4.362030e-02   p_cons 1.147208e-04   p_joint 1.826904e-03

Joint ci ratio: 4.609143e-02	ci left: 1.785714e-03	ci right 1.870209e-03	k: 7219	n:3950000
Cons ci ratio: 1.839641e-01	ci left: 1.043650e-04	ci right 1.257462e-04	k: 453	n:3950000
KS ci ratio: 9.234956e-03	ci left: 4.342333e-02	ci right 4.382645e-02	k: 172317	n:3950000
CSRNP3   3950000 perm   7453 sec   (530 perm/sec)   p_kst 4.362456e-02   p_cons 1.146835e-04   p_joint 1.827595e-03

Joint ci ratio: 4.602452e-02	ci left: 1.786446e-03	ci right 1.870851e-03	k: 7240	n:3960000
Cons ci ratio: 1.835602e-01	ci left: 1.045833e-04	ci right 1.259570e-04	k: 455	n:3960000
KS ci ratio: 9.223407e-03	ci left: 4.342252e-02	ci right 4.382512e-02	k: 172749	n:3960000
CSRNP3   3960000 perm   7489 sec   (529 perm/sec)   p_kst 4.362348e-02   p_cons 1.148990e-04   p_joint 1.828283e-03

Joint ci ratio: 4.594524e-02	ci left: 1.788171e-03	ci right 1.872508e-03	k: 7265	n:3970000
Cons ci ratio: 1.833593e-01	ci left: 1.045601e-04	ci right 1.259031e-04	k: 456	n:3970000
KS ci ratio: 9.211568e-03	ci left: 4.342472e-02	ci right 4.382683e-02	k: 173193	n:3970000
CSRNP3   3970000 perm   7524 sec   (528 perm/sec)   p_kst 4.362544e-02   p_cons 1.148615e-04   p_joint 1.829975e-03

Joint ci ratio: 4.586951e-02	ci left: 1.789639e-03	ci right 1.873902e-03	k: 7289	n:3980000
Cons ci ratio: 1.833593e-01	ci left: 1.042974e-04	ci right 1.255868e-04	k: 456	n:3980000
KS ci ratio: 9.200438e-03	ci left: 4.342090e-02	ci right 4.382248e-02	k: 173613	n:3980000
CSRNP3   3980000 perm   7560 sec   (526 perm/sec)   p_kst 4.362136e-02   p_cons 1.145729e-04   p_joint 1.831407e-03

Joint ci ratio: 4.579416e-02	ci left: 1.791100e-03	ci right 1.875290e-03	k: 7313	n:3990000
Cons ci ratio: 1.827604e-01	ci left: 1.047535e-04	ci right 1.260583e-04	k: 459	n:3990000
KS ci ratio: 9.189405e-03	ci left: 4.341659e-02	ci right 4.381765e-02	k: 174031	n:3990000
CSRNP3   3990000 perm   7596 sec   (525 perm/sec)   p_kst 4.361679e-02   p_cons 1.150376e-04   p_joint 1.832832e-03

Joint ci ratio: 4.573792e-02	ci left: 1.791071e-03	ci right 1.875153e-03	k: 7331	n:4000000
Cons ci ratio: 1.827604e-01	ci left: 1.044916e-04	ci right 1.257432e-04	k: 459	n:4000000
KS ci ratio: 9.178108e-03	ci left: 4.341506e-02	ci right 4.381560e-02	k: 174460	n:4000000
CSRNP3   4000000 perm   7633 sec   (524 perm/sec)   p_kst 4.361500e-02   p_cons 1.147500e-04   p_joint 1.832750e-03

Joint ci ratio: 4.566943e-02	ci left: 1.792028e-03	ci right 1.876026e-03	k: 7353	n:4010000
Cons ci ratio: 1.827604e-01	ci left: 1.042310e-04	ci right 1.254296e-04	k: 459	n:4010000
KS ci ratio: 9.166442e-03	ci left: 4.341726e-02	ci right 4.381732e-02	k: 174904	n:4010000
CSRNP3   4010000 perm   7669 sec   (523 perm/sec)   p_kst 4.361696e-02   p_cons 1.144638e-04   p_joint 1.833666e-03

Joint ci ratio: 4.561055e-02	ci left: 1.792243e-03	ci right 1.876139e-03	k: 7372	n:4020000
Cons ci ratio: 1.825621e-01	ci left: 1.042091e-04	ci right 1.253777e-04	k: 460	n:4020000
KS ci ratio: 9.155038e-03	ci left: 4.341747e-02	ci right 4.381702e-02	k: 175340	n:4020000
CSRNP3   4020000 perm   7705 sec   (522 perm/sec)   p_kst 4.361692e-02   p_cons 1.144279e-04   p_joint 1.833831e-03

Joint ci ratio: 4.552413e-02	ci left: 1.794664e-03	ci right 1.878511e-03	k: 7400	n:4030000
Cons ci ratio: 1.819709e-01	ci left: 1.046610e-04	ci right 1.258450e-04	k: 463	n:4030000
KS ci ratio: 9.143324e-03	ci left: 4.342089e-02	ci right 4.381996e-02	k: 175789	n:4030000
CSRNP3   4030000 perm   7741 sec   (521 perm/sec)   p_kst 4.362010e-02   p_cons 1.148883e-04   p_joint 1.836228e-03

Joint ci ratio: 4.545967e-02	ci left: 1.795361e-03	ci right 1.879118e-03	k: 7421	n:4040000
Cons ci ratio: 1.817752e-01	ci left: 1.046382e-04	ci right 1.257922e-04	k: 464	n:4040000
KS ci ratio: 9.133442e-03	ci left: 4.340800e-02	ci right 4.380652e-02	k: 176172	n:4040000
CSRNP3   4040000 perm   7777 sec   (519 perm/sec)   p_kst 4.360693e-02   p_cons 1.148515e-04   p_joint 1.836881e-03

Joint ci ratio: 4.541076e-02	ci left: 1.794834e-03	ci right 1.878474e-03	k: 7437	n:4050000
Cons ci ratio: 1.817752e-01	ci left: 1.043798e-04	ci right 1.254816e-04	k: 464	n:4050000
KS ci ratio: 9.122108e-03	ci left: 4.340872e-02	ci right 4.380675e-02	k: 176610	n:4050000
CSRNP3   4050000 perm   7814 sec   (518 perm/sec)   p_kst 4.360741e-02   p_cons 1.145679e-04   p_joint 1.836296e-03

Joint ci ratio: 4.535287e-02	ci left: 1.795039e-03	ci right 1.878580e-03	k: 7456	n:4060000
Cons ci ratio: 1.813855e-01	ci left: 1.045929e-04	ci right 1.256875e-04	k: 466	n:4060000
KS ci ratio: 9.111380e-03	ci left: 4.340427e-02	ci right 4.380180e-02	k: 177027	n:4060000
CSRNP3   4060000 perm   7850 sec   (517 perm/sec)   p_kst 4.360271e-02   p_cons 1.147783e-04   p_joint 1.836453e-03

Joint ci ratio: 4.531342e-02	ci left: 1.793787e-03	ci right 1.877195e-03	k: 7469	n:4070000
Cons ci ratio: 1.809983e-01	ci left: 1.048051e-04	ci right 1.258924e-04	k: 468	n:4070000
KS ci ratio: 9.099725e-03	ci left: 4.340868e-02	ci right 4.380573e-02	k: 177480	n:4070000
CSRNP3   4070000 perm   7886 sec   (516 perm/sec)   p_kst 4.360688e-02   p_cons 1.149877e-04   p_joint 1.835135e-03

Joint ci ratio: 4.409989e-02	ci left: 1.890214e-03	ci right 1.975692e-03	k: 7885	n:4080000
Cons ci ratio: 1.806136e-01	ci left: 1.050162e-04	ci right 1.260962e-04	k: 470	n:4080000
KS ci ratio: 9.087740e-03	ci left: 4.341649e-02	ci right 4.381308e-02	k: 177947	n:4080000
CSRNP3   4080000 perm   7923 sec   (515 perm/sec)   p_kst 4.361446e-02   p_cons 1.151961e-04   p_joint 1.932598e-03

Joint ci ratio: 4.405524e-02	ci left: 1.889461e-03	ci right 1.974816e-03	k: 7901	n:4090000
Cons ci ratio: 1.804222e-01	ci left: 1.049929e-04	ci right 1.260434e-04	k: 471	n:4090000
KS ci ratio: 9.076176e-03	ci left: 4.342084e-02	ci right 4.381697e-02	k: 178400	n:4090000
CSRNP3   4090000 perm   7959 sec   (514 perm/sec)   p_kst 4.361858e-02   p_cons 1.151589e-04   p_joint 1.931785e-03

Joint ci ratio: 4.399959e-02	ci left: 1.889677e-03	ci right 1.974931e-03	k: 7921	n:4100000
Cons ci ratio: 1.804222e-01	ci left: 1.047368e-04	ci right 1.257360e-04	k: 471	n:4100000
KS ci ratio: 9.065370e-03	ci left: 4.341860e-02	ci right 4.381424e-02	k: 178826	n:4100000
CSRNP3   4100000 perm   7995 sec   (513 perm/sec)   p_kst 4.361610e-02   p_cons 1.148780e-04   p_joint 1.931951e-03

Joint ci ratio: 4.393584e-02	ci left: 1.890614e-03	ci right 1.975784e-03	k: 7944	n:4110000
Cons ci ratio: 1.800412e-01	ci left: 1.049466e-04	ci right 1.259386e-04	k: 473	n:4110000
KS ci ratio: 9.054234e-03	ci left: 4.341978e-02	ci right 4.381493e-02	k: 179266	n:4110000
CSRNP3   4110000 perm   8032 sec   (512 perm/sec)   p_kst 4.361703e-02   p_cons 1.150852e-04   p_joint 1.932847e-03

Joint ci ratio: 4.387788e-02	ci left: 1.891066e-03	ci right 1.976141e-03	k: 7965	n:4120000
Cons ci ratio: 1.796625e-01	ci left: 1.051555e-04	ci right 1.261402e-04	k: 475	n:4120000
KS ci ratio: 9.043112e-03	ci left: 4.342118e-02	ci right 4.381587e-02	k: 179707	n:4120000
CSRNP3   4120000 perm   8070 sec   (511 perm/sec)   p_kst 4.361820e-02   p_cons 1.152913e-04   p_joint 1.933252e-03

Joint ci ratio: 4.382015e-02	ci left: 1.891516e-03	ci right 1.976497e-03	k: 7986	n:4130000
Cons ci ratio: 1.794741e-01	ci left: 1.051321e-04	ci right 1.260878e-04	k: 476	n:4130000
KS ci ratio: 9.032241e-03	ci left: 4.342065e-02	ci right 4.381485e-02	k: 180140	n:4130000
CSRNP3   4130000 perm   8107 sec   (509 perm/sec)   p_kst 4.361743e-02   p_cons 1.152542e-04   p_joint 1.933656e-03

Joint ci ratio: 4.377634e-02	ci left: 1.890770e-03	ci right 1.975630e-03	k: 8002	n:4140000
Cons ci ratio: 1.790990e-01	ci left: 1.053396e-04	ci right 1.262880e-04	k: 478	n:4140000
KS ci ratio: 9.020912e-03	ci left: 4.342471e-02	ci right 4.381844e-02	k: 180592	n:4140000
CSRNP3   4140000 perm   8144 sec   (508 perm/sec)   p_kst 4.362126e-02   p_cons 1.154589e-04   p_joint 1.932850e-03

Joint ci ratio: 4.479457e-02	ci left: 1.800663e-03	ci right 1.883408e-03	k: 7643	n:4150000
Cons ci ratio: 1.787262e-01	ci left: 1.055461e-04	ci right 1.264872e-04	k: 480	n:4150000
KS ci ratio: 9.009913e-03	ci left: 4.342609e-02	ci right 4.381936e-02	k: 181033	n:4150000
CSRNP3   4150000 perm   8181 sec   (507 perm/sec)   p_kst 4.362241e-02   p_cons 1.156627e-04   p_joint 1.841687e-03

Joint ci ratio: 4.472146e-02	ci left: 1.802277e-03	ci right 1.884957e-03	k: 7668	n:4160000
Cons ci ratio: 1.785407e-01	ci left: 1.055220e-04	ci right 1.264342e-04	k: 481	n:4160000
KS ci ratio: 8.998694e-03	ci left: 4.342987e-02	ci right 4.382268e-02	k: 181484	n:4160000
CSRNP3   4160000 perm   8217 sec   (506 perm/sec)   p_kst 4.362596e-02   p_cons 1.156250e-04   p_joint 1.843269e-03

Joint ci ratio: 4.466616e-02	ci left: 1.802461e-03	ci right 1.885044e-03	k: 7687	n:4170000
Cons ci ratio: 1.781715e-01	ci left: 1.057272e-04	ci right 1.266320e-04	k: 483	n:4170000
KS ci ratio: 8.987905e-03	ci left: 4.343005e-02	ci right 4.382239e-02	k: 181920	n:4170000
CSRNP3   4170000 perm   8254 sec   (505 perm/sec)   p_kst 4.362590e-02   p_cons 1.158273e-04   p_joint 1.843405e-03

Joint ci ratio: 4.460527e-02	ci left: 1.803117e-03	ci right 1.885614e-03	k: 7708	n:4180000
Cons ci ratio: 1.781715e-01	ci left: 1.054742e-04	ci right 1.263291e-04	k: 483	n:4180000
KS ci ratio: 8.977360e-03	ci left: 4.342831e-02	ci right 4.382017e-02	k: 182348	n:4180000
CSRNP3   4180000 perm   8292 sec   (504 perm/sec)   p_kst 4.362392e-02   p_cons 1.155502e-04   p_joint 1.844019e-03

Joint ci ratio: 4.453308e-02	ci left: 1.804713e-03	ci right 1.887147e-03	k: 7733	n:4190000
Cons ci ratio: 1.781715e-01	ci left: 1.052225e-04	ci right 1.260276e-04	k: 483	n:4190000
KS ci ratio: 8.965621e-03	ci left: 4.343801e-02	ci right 4.382945e-02	k: 182824	n:4190000
CSRNP3   4190000 perm   8329 sec   (503 perm/sec)   p_kst 4.363341e-02   p_cons 1.152745e-04   p_joint 1.845585e-03

Joint ci ratio: 4.446986e-02	ci left: 1.805596e-03	ci right 1.887950e-03	k: 7755	n:4200000
Cons ci ratio: 1.778045e-01	ci left: 1.054270e-04	ci right 1.262249e-04	k: 485	n:4200000
KS ci ratio: 8.954439e-03	ci left: 4.344292e-02	ci right 4.383390e-02	k: 183280	n:4200000
CSRNP3   4200000 perm   8367 sec   (502 perm/sec)   p_kst 4.363810e-02   p_cons 1.154762e-04   p_joint 1.846429e-03

Joint ci ratio: 4.491895e-02	ci left: 1.765136e-03	ci right 1.846478e-03	k: 7601	n:4210000
Cons ci ratio: 1.778045e-01	ci left: 1.051765e-04	ci right 1.259251e-04	k: 485	n:4210000
KS ci ratio: 8.943400e-03	ci left: 4.344685e-02	ci right 4.383739e-02	k: 183732	n:4210000
CSRNP3   4210000 perm   8405 sec   (501 perm/sec)   p_kst 4.364181e-02   p_cons 1.152019e-04   p_joint 1.805463e-03

Joint ci ratio: 4.487472e-02	ci left: 1.764468e-03	ci right 1.845697e-03	k: 7616	n:4220000
Cons ci ratio: 1.774398e-01	ci left: 1.053802e-04	ci right 1.261217e-04	k: 487	n:4220000
KS ci ratio: 8.932910e-03	ci left: 4.344604e-02	ci right 4.383611e-02	k: 184164	n:4220000
CSRNP3   4220000 perm   8443 sec   (500 perm/sec)   p_kst 4.364076e-02   p_cons 1.154028e-04   p_joint 1.804739e-03

Joint ci ratio: 4.483061e-02	ci left: 1.763803e-03	ci right 1.844920e-03	k: 7631	n:4230000
Cons ci ratio: 1.772583e-01	ci left: 1.053570e-04	ci right 1.260704e-04	k: 488	n:4230000
KS ci ratio: 8.922254e-03	ci left: 4.344711e-02	ci right 4.383673e-02	k: 184604	n:4230000
CSRNP3   4230000 perm   8482 sec   (499 perm/sec)   p_kst 4.364161e-02   p_cons 1.153664e-04   p_joint 1.804019e-03

Joint ci ratio: 4.477784e-02	ci left: 1.763840e-03	ci right 1.844861e-03	k: 7649	n:4240000
Cons ci ratio: 1.768969e-01	ci left: 1.055593e-04	ci right 1.262656e-04	k: 490	n:4240000
KS ci ratio: 8.911283e-03	ci left: 4.345148e-02	ci right 4.384065e-02	k: 185058	n:4240000
CSRNP3   4240000 perm   8520 sec   (498 perm/sec)   p_kst 4.364575e-02   p_cons 1.155660e-04   p_joint 1.804009e-03

Joint ci ratio: 4.472233e-02	ci left: 1.764111e-03	ci right 1.845041e-03	k: 7668	n:4250000
Cons ci ratio: 1.768969e-01	ci left: 1.053109e-04	ci right 1.259685e-04	k: 490	n:4250000
KS ci ratio: 8.901733e-03	ci left: 4.344292e-02	ci right 4.383159e-02	k: 185457	n:4250000
CSRNP3   4250000 perm   8558 sec   (497 perm/sec)   p_kst 4.363694e-02   p_cons 1.152941e-04   p_joint 1.804235e-03

Joint ci ratio: 4.467285e-02	ci left: 1.763916e-03	ci right 1.844745e-03	k: 7685	n:4260000
Cons ci ratio: 1.767170e-01	ci left: 1.052880e-04	ci right 1.259180e-04	k: 491	n:4260000
KS ci ratio: 8.890488e-03	ci left: 4.345055e-02	ci right 4.383880e-02	k: 185925	n:4260000
CSRNP3   4260000 perm   8597 sec   (496 perm/sec)   p_kst 4.364437e-02   p_cons 1.152582e-04   p_joint 1.803991e-03

Joint ci ratio: 4.463515e-02	ci left: 1.762795e-03	ci right 1.843503e-03	k: 7698	n:4270000
Cons ci ratio: 1.765377e-01	ci left: 1.052653e-04	ci right 1.258676e-04	k: 492	n:4270000
KS ci ratio: 8.880282e-03	ci left: 4.344881e-02	ci right 4.383659e-02	k: 186353	n:4270000
CSRNP3   4270000 perm   8634 sec   (495 perm/sec)   p_kst 4.364239e-02   p_cons 1.152225e-04   p_joint 1.802810e-03

Joint ci ratio: 4.458306e-02	ci left: 1.762835e-03	ci right 1.843449e-03	k: 7716	n:4280000
Cons ci ratio: 1.761807e-01	ci left: 1.054660e-04	ci right 1.260614e-04	k: 494	n:4280000
KS ci ratio: 8.870136e-03	ci left: 4.344683e-02	ci right 4.383416e-02	k: 186780	n:4280000
CSRNP3   4280000 perm   8673 sec   (493 perm/sec)   p_kst 4.364019e-02   p_cons 1.154206e-04   p_joint 1.802804e-03

Joint ci ratio: 4.452539e-02	ci left: 1.763336e-03	ci right 1.843866e-03	k: 7736	n:4290000
Cons ci ratio: 1.760030e-01	ci left: 1.054430e-04	ci right 1.260109e-04	k: 495	n:4290000
KS ci ratio: 8.859134e-03	ci left: 4.345325e-02	ci right 4.384014e-02	k: 187243	n:4290000
CSRNP3   4290000 perm   8711 sec   (493 perm/sec)   p_kst 4.364639e-02   p_cons 1.153846e-04   p_joint 1.803263e-03

Joint ci ratio: 4.447369e-02	ci left: 1.763375e-03	ci right 1.843810e-03	k: 7754	n:4300000
Cons ci ratio: 1.758258e-01	ci left: 1.054201e-04	ci right 1.259607e-04	k: 496	n:4300000
KS ci ratio: 8.848419e-03	ci left: 4.345731e-02	ci right 4.384377e-02	k: 187696	n:4300000
CSRNP3   4300000 perm   8749 sec   (491 perm/sec)   p_kst 4.365023e-02   p_cons 1.153488e-04   p_joint 1.803256e-03

Joint ci ratio: 4.443075e-02	ci left: 1.762725e-03	ci right 1.843051e-03	k: 7769	n:4310000
Cons ci ratio: 1.756492e-01	ci left: 1.053973e-04	ci right 1.259106e-04	k: 497	n:4310000
KS ci ratio: 8.837547e-03	ci left: 4.346320e-02	ci right 4.384924e-02	k: 188157	n:4310000
CSRNP3   4310000 perm   8788 sec   (490 perm/sec)   p_kst 4.365592e-02   p_cons 1.153132e-04   p_joint 1.802552e-03

Joint ci ratio: 4.439366e-02	ci left: 1.761620e-03	ci right 1.841827e-03	k: 7782	n:4320000
Cons ci ratio: 1.754731e-01	ci left: 1.053747e-04	ci right 1.258608e-04	k: 498	n:4320000
KS ci ratio: 8.827399e-03	ci left: 4.346261e-02	ci right 4.384819e-02	k: 188590	n:4320000
CSRNP3   4320000 perm   8827 sec   (489 perm/sec)   p_kst 4.365509e-02   p_cons 1.152778e-04   p_joint 1.801389e-03

Joint ci ratio: 4.436521e-02	ci left: 1.759836e-03	ci right 1.839909e-03	k: 7792	n:4330000
Cons ci ratio: 1.752976e-01	ci left: 1.053521e-04	ci right 1.258112e-04	k: 499	n:4330000
KS ci ratio: 8.816872e-03	ci left: 4.346593e-02	ci right 4.385108e-02	k: 189040	n:4330000
CSRNP3   4330000 perm   8866 sec   (488 perm/sec)   p_kst 4.365820e-02   p_cons 1.152425e-04   p_joint 1.799538e-03

Joint ci ratio: 4.431406e-02	ci left: 1.759882e-03	ci right 1.839863e-03	k: 7810	n:4340000
Cons ci ratio: 1.747740e-01	ci left: 1.057703e-04	ci right 1.262428e-04	k: 502	n:4340000
KS ci ratio: 8.806674e-03	ci left: 4.346647e-02	ci right 4.385119e-02	k: 189478	n:4340000
CSRNP3   4340000 perm   8905 sec   (487 perm/sec)   p_kst 4.365853e-02   p_cons 1.156682e-04   p_joint 1.799539e-03

Joint ci ratio: 4.428576e-02	ci left: 1.758110e-03	ci right 1.837958e-03	k: 7820	n:4350000
Cons ci ratio: 1.747740e-01	ci left: 1.055272e-04	ci right 1.259526e-04	k: 502	n:4350000
KS ci ratio: 8.796657e-03	ci left: 4.346564e-02	ci right 4.384991e-02	k: 189910	n:4350000
CSRNP3   4350000 perm   8944 sec   (486 perm/sec)   p_kst 4.365747e-02   p_cons 1.154023e-04   p_joint 1.797701e-03

Joint ci ratio: 4.435978e-02	ci left: 1.748180e-03	ci right 1.827713e-03	k: 7794	n:4360000
Cons ci ratio: 1.744276e-01	ci left: 1.057238e-04	ci right 1.261425e-04	k: 504	n:4360000
KS ci ratio: 8.786746e-03	ci left: 4.346413e-02	ci right 4.384794e-02	k: 190339	n:4360000
CSRNP3   4360000 perm   8983 sec   (485 perm/sec)   p_kst 4.365573e-02   p_cons 1.155963e-04   p_joint 1.787615e-03

Joint ci ratio: 4.444563e-02	ci left: 1.737391e-03	ci right 1.816590e-03	k: 7764	n:4370000
Cons ci ratio: 1.742551e-01	ci left: 1.057007e-04	ci right 1.260926e-04	k: 505	n:4370000
KS ci ratio: 8.776820e-03	ci left: 4.346308e-02	ci right 4.384645e-02	k: 190770	n:4370000
CSRNP3   4370000 perm   9021 sec   (484 perm/sec)   p_kst 4.365446e-02   p_cons 1.155606e-04   p_joint 1.776659e-03

Joint ci ratio: 4.438564e-02	ci left: 1.738166e-03	ci right 1.817290e-03	k: 7785	n:4380000
Cons ci ratio: 1.742552e-01	ci left: 1.054594e-04	ci right 1.258047e-04	k: 505	n:4380000
KS ci ratio: 8.766928e-03	ci left: 4.346203e-02	ci right 4.384496e-02	k: 191201	n:4380000
CSRNP3   4380000 perm   9061 sec   (483 perm/sec)   p_kst 4.365320e-02   p_cons 1.152968e-04   p_joint 1.777397e-03

Joint ci ratio: 4.432589e-02	ci left: 1.738937e-03	ci right 1.817987e-03	k: 7806	n:4390000
Cons ci ratio: 1.739118e-01	ci left: 1.056549e-04	ci right 1.259936e-04	k: 507	n:4390000
KS ci ratio: 8.756616e-03	ci left: 4.346531e-02	ci right 4.384782e-02	k: 191651	n:4390000
CSRNP3   4390000 perm   9102 sec   (482 perm/sec)   p_kst 4.365626e-02   p_cons 1.154897e-04   p_joint 1.778132e-03

Joint ci ratio: 4.428054e-02	ci left: 1.738581e-03	ci right 1.817532e-03	k: 7822	n:4400000
Cons ci ratio: 1.739118e-01	ci left: 1.054148e-04	ci right 1.257072e-04	k: 507	n:4400000
KS ci ratio: 8.747173e-03	ci left: 4.346064e-02	ci right 4.384269e-02	k: 192066	n:4400000
CSRNP3   4400000 perm   9142 sec   (481 perm/sec)   p_kst 4.365136e-02   p_cons 1.152273e-04   p_joint 1.777727e-03

Joint ci ratio: 4.422686e-02	ci left: 1.738899e-03	ci right 1.817767e-03	k: 7841	n:4410000
Cons ci ratio: 1.735705e-01	ci left: 1.056095e-04	ci right 1.258954e-04	k: 509	n:4410000
KS ci ratio: 8.736977e-03	ci left: 4.346346e-02	ci right 4.384508e-02	k: 192514	n:4410000
CSRNP3   4410000 perm   9181 sec   (480 perm/sec)   p_kst 4.365397e-02   p_cons 1.154195e-04   p_joint 1.778005e-03

Joint ci ratio: 4.417337e-02	ci left: 1.739216e-03	ci right 1.818000e-03	k: 7860	n:4420000
Cons ci ratio: 1.734005e-01	ci left: 1.055870e-04	ci right 1.258466e-04	k: 510	n:4420000
KS ci ratio: 8.726888e-03	ci left: 4.346558e-02	ci right 4.384678e-02	k: 192959	n:4420000
CSRNP3   4420000 perm   9220 sec   (479 perm/sec)   p_kst 4.365588e-02   p_cons 1.153846e-04   p_joint 1.778281e-03

Joint ci ratio: 4.412008e-02	ci left: 1.739532e-03	ci right 1.818232e-03	k: 7879	n:4430000
Cons ci ratio: 1.732311e-01	ci left: 1.055646e-04	ci right 1.257981e-04	k: 511	n:4430000
KS ci ratio: 8.717447e-03	ci left: 4.346184e-02	ci right 4.384259e-02	k: 193378	n:4430000
CSRNP3   4430000 perm   9259 sec   (478 perm/sec)   p_kst 4.365192e-02   p_cons 1.153499e-04   p_joint 1.778555e-03

Joint ci ratio: 4.405860e-02	ci left: 1.740514e-03	ci right 1.819147e-03	k: 7901	n:4440000
Cons ci ratio: 1.727258e-01	ci left: 1.059733e-04	ci right 1.262196e-04	k: 514	n:4440000
KS ci ratio: 8.708060e-03	ci left: 4.345789e-02	ci right 4.383820e-02	k: 193796	n:4440000
CSRNP3   4440000 perm   9299 sec   (477 perm/sec)   p_kst 4.364775e-02   p_cons 1.157658e-04   p_joint 1.779505e-03

Joint ci ratio: 4.401686e-02	ci left: 1.739936e-03	ci right 1.818467e-03	k: 7916	n:4450000
Cons ci ratio: 1.727258e-01	ci left: 1.057351e-04	ci right 1.259360e-04	k: 514	n:4450000
KS ci ratio: 8.698258e-03	ci left: 4.345822e-02	ci right 4.383810e-02	k: 194233	n:4450000
CSRNP3   4450000 perm   9338 sec   (477 perm/sec)   p_kst 4.364787e-02   p_cons 1.155056e-04   p_joint 1.778876e-03

Joint ci ratio: 4.397245e-02	ci left: 1.739583e-03	ci right 1.818016e-03	k: 7932	n:4460000
Cons ci ratio: 1.727258e-01	ci left: 1.054981e-04	ci right 1.256536e-04	k: 514	n:4460000
KS ci ratio: 8.688815e-03	ci left: 4.345542e-02	ci right 4.383486e-02	k: 194656	n:4460000
CSRNP3   4460000 perm   9379 sec   (476 perm/sec)   p_kst 4.364484e-02   p_cons 1.152466e-04   p_joint 1.778475e-03

Joint ci ratio: 4.393095e-02	ci left: 1.739010e-03	ci right 1.817342e-03	k: 7947	n:4470000
Cons ci ratio: 1.723914e-01	ci left: 1.056902e-04	ci right 1.258393e-04	k: 516	n:4470000
KS ci ratio: 8.678683e-03	ci left: 4.345955e-02	ci right 4.383858e-02	k: 195110	n:4470000
CSRNP3   4470000 perm   9419 sec   (475 perm/sec)   p_kst 4.364877e-02   p_cons 1.154362e-04   p_joint 1.777852e-03

Joint ci ratio: 4.388129e-02	ci left: 1.739102e-03	ci right 1.817347e-03	k: 7965	n:4480000
Cons ci ratio: 1.720589e-01	ci left: 1.058814e-04	ci right 1.260240e-04	k: 518	n:4480000
KS ci ratio: 8.668701e-03	ci left: 4.346255e-02	ci right 4.384117e-02	k: 195559	n:4480000
CSRNP3   4480000 perm   9458 sec   (474 perm/sec)   p_kst 4.365156e-02   p_cons 1.156250e-04   p_joint 1.777902e-03

Joint ci ratio: 4.383730e-02	ci left: 1.738754e-03	ci right 1.816902e-03	k: 7981	n:4490000
Cons ci ratio: 1.717283e-01	ci left: 1.060719e-04	ci right 1.262079e-04	k: 520	n:4490000
KS ci ratio: 8.658823e-03	ci left: 4.346487e-02	ci right 4.384307e-02	k: 196005	n:4490000
CSRNP3   4490000 perm   9498 sec   (473 perm/sec)   p_kst 4.365367e-02   p_cons 1.158129e-04   p_joint 1.777506e-03

Joint ci ratio: 4.377425e-02	ci left: 1.739945e-03	ci right 1.818032e-03	k: 8004	n:4500000
Cons ci ratio: 1.713997e-01	ci left: 1.062615e-04	ci right 1.263910e-04	k: 522	n:4500000
KS ci ratio: 8.649969e-03	ci left: 4.345764e-02	ci right 4.383539e-02	k: 196408	n:4500000
CSRNP3   4500000 perm   9537 sec   (472 perm/sec)   p_kst 4.364622e-02   p_cons 1.160000e-04   p_joint 1.778667e-03

Joint ci ratio: 4.348685e-02	ci left: 1.759334e-03	ci right 1.837760e-03	k: 8110	n:4510000
Cons ci ratio: 1.710728e-01	ci left: 1.064504e-04	ci right 1.265732e-04	k: 524	n:4510000
KS ci ratio: 8.640201e-03	ci left: 4.345952e-02	ci right 4.383686e-02	k: 196852	n:4510000
CSRNP3   4510000 perm   9578 sec   (471 perm/sec)   p_kst 4.364789e-02   p_cons 1.161863e-04   p_joint 1.798226e-03

Joint ci ratio: 4.342797e-02	ci left: 1.760256e-03	ci right 1.838614e-03	k: 8132	n:4520000
Cons ci ratio: 1.707479e-01	ci left: 1.066384e-04	ci right 1.267545e-04	k: 526	n:4520000
KS ci ratio: 8.629940e-03	ci left: 4.346646e-02	ci right 4.384341e-02	k: 197319	n:4520000
CSRNP3   4520000 perm   9618 sec   (470 perm/sec)   p_kst 4.365465e-02   p_cons 1.163717e-04   p_joint 1.799115e-03

Joint ci ratio: 4.339867e-02	ci left: 1.758772e-03	ci right 1.837010e-03	k: 8143	n:4530000
Cons ci ratio: 1.707479e-01	ci left: 1.064030e-04	ci right 1.264747e-04	k: 526	n:4530000
KS ci ratio: 8.620331e-03	ci left: 4.346743e-02	ci right 4.384397e-02	k: 197759	n:4530000
CSRNP3   4530000 perm   9659 sec   (469 perm/sec)   p_kst 4.365541e-02   p_cons 1.161148e-04   p_joint 1.797572e-03

Joint ci ratio: 4.336143e-02	ci left: 1.757949e-03	ci right 1.836081e-03	k: 8157	n:4540000
Cons ci ratio: 1.704248e-01	ci left: 1.065904e-04	ci right 1.266555e-04	k: 528	n:4540000
KS ci ratio: 8.611345e-03	ci left: 4.346268e-02	ci right 4.383878e-02	k: 198173	n:4540000
CSRNP3   4540000 perm   9700 sec   (468 perm/sec)   p_kst 4.365044e-02   p_cons 1.162996e-04   p_joint 1.796696e-03

Joint ci ratio: 4.331102e-02	ci left: 1.758216e-03	ci right 1.836267e-03	k: 8176	n:4550000
Cons ci ratio: 1.702640e-01	ci left: 1.065665e-04	ci right 1.266062e-04	k: 529	n:4550000
KS ci ratio: 8.601978e-03	ci left: 4.346190e-02	ci right 4.383758e-02	k: 198605	n:4550000
CSRNP3   4550000 perm   9740 sec   (467 perm/sec)   p_kst 4.364945e-02   p_cons 1.162637e-04   p_joint 1.796923e-03

Joint ci ratio: 4.325021e-02	ci left: 1.759349e-03	ci right 1.837338e-03	k: 8199	n:4560000
Cons ci ratio: 1.701036e-01	ci left: 1.065428e-04	ci right 1.265572e-04	k: 530	n:4560000
KS ci ratio: 8.591808e-03	ci left: 4.346922e-02	ci right 4.384452e-02	k: 199074	n:4560000
CSRNP3   4560000 perm   9781 sec   (466 perm/sec)   p_kst 4.365658e-02   p_cons 1.162281e-04   p_joint 1.798026e-03

Joint ci ratio: 4.319492e-02	ci left: 1.760045e-03	ci right 1.837963e-03	k: 8220	n:4570000
Cons ci ratio: 1.696251e-01	ci left: 1.069382e-04	ci right 1.269646e-04	k: 533	n:4570000
KS ci ratio: 8.582618e-03	ci left: 4.346733e-02	ci right 4.384222e-02	k: 199501	n:4570000
CSRNP3   4570000 perm   9821 sec   (465 perm/sec)   p_kst 4.365449e-02   p_cons 1.166302e-04   p_joint 1.798687e-03

Joint ci ratio: 4.232948e-02	ci left: 1.829430e-03	ci right 1.908757e-03	k: 8559	n:4580000
Cons ci ratio: 1.693083e-01	ci left: 1.071229e-04	ci right 1.271426e-04	k: 535	n:4580000
KS ci ratio: 8.573255e-03	ci left: 4.346742e-02	ci right 4.384189e-02	k: 199937	n:4580000
CSRNP3   4580000 perm   9861 sec   (464 perm/sec)   p_kst 4.365437e-02   p_cons 1.168122e-04   p_joint 1.868777e-03

Joint ci ratio: 4.227024e-02	ci left: 1.830617e-03	ci right 1.909882e-03	k: 8583	n:4590000
Cons ci ratio: 1.691506e-01	ci left: 1.070981e-04	ci right 1.270927e-04	k: 536	n:4590000
KS ci ratio: 8.563208e-03	ci left: 4.347446e-02	ci right 4.384855e-02	k: 200405	n:4590000
CSRNP3   4590000 perm   9902 sec   (464 perm/sec)   p_kst 4.366122e-02   p_cons 1.167756e-04   p_joint 1.869935e-03

Joint ci ratio: 4.290855e-02	ci left: 1.772222e-03	ci right 1.850146e-03	k: 8330	n:4600000
Cons ci ratio: 1.691506e-01	ci left: 1.068653e-04	ci right 1.268164e-04	k: 536	n:4600000
KS ci ratio: 8.554132e-03	ci left: 4.347236e-02	ci right 4.384604e-02	k: 200831	n:4600000
CSRNP3   4600000 perm   9944 sec   (463 perm/sec)   p_kst 4.365891e-02   p_cons 1.165217e-04   p_joint 1.810870e-03

Joint ci ratio: 4.286227e-02	ci left: 1.772241e-03	ci right 1.850079e-03	k: 8348	n:4610000
Cons ci ratio: 1.689933e-01	ci left: 1.068412e-04	ci right 1.267674e-04	k: 537	n:4610000
KS ci ratio: 8.544906e-03	ci left: 4.347200e-02	ci right 4.384527e-02	k: 201265	n:4610000
CSRNP3   4610000 perm   9986 sec   (462 perm/sec)   p_kst 4.365835e-02   p_cons 1.164859e-04   p_joint 1.810846e-03

Joint ci ratio: 4.281870e-02	ci left: 1.772045e-03	ci right 1.849794e-03	k: 8365	n:4620000
Cons ci ratio: 1.688365e-01	ci left: 1.068173e-04	ci right 1.267186e-04	k: 538	n:4620000
KS ci ratio: 8.535556e-03	ci left: 4.347316e-02	ci right 4.384603e-02	k: 201706	n:4620000
CSRNP3   4620000 perm   10028 sec   (461 perm/sec)   p_kst 4.365931e-02   p_cons 1.164502e-04   p_joint 1.810606e-03

Joint ci ratio: 4.278806e-02	ci left: 1.770782e-03	ci right 1.848418e-03	k: 8377	n:4630000
Cons ci ratio: 1.686801e-01	ci left: 1.067934e-04	ci right 1.266700e-04	k: 539	n:4630000
KS ci ratio: 8.526390e-03	ci left: 4.347280e-02	ci right 4.384526e-02	k: 202140	n:4630000
CSRNP3   4630000 perm   10069 sec   (460 perm/sec)   p_kst 4.365875e-02   p_cons 1.164147e-04   p_joint 1.809287e-03

Joint ci ratio: 4.275747e-02	ci left: 1.769524e-03	ci right 1.847048e-03	k: 8389	n:4640000
Cons ci ratio: 1.686801e-01	ci left: 1.065633e-04	ci right 1.263970e-04	k: 539	n:4640000
KS ci ratio: 8.517936e-03	ci left: 4.346578e-02	ci right 4.383781e-02	k: 202543	n:4640000
CSRNP3   4640000 perm   10111 sec   (459 perm/sec)   p_kst 4.365151e-02   p_cons 1.161638e-04   p_joint 1.807974e-03

Joint ci ratio: 4.271423e-02	ci left: 1.769335e-03	ci right 1.846771e-03	k: 8406	n:4650000
Cons ci ratio: 1.686801e-01	ci left: 1.063341e-04	ci right 1.261252e-04	k: 539	n:4650000
KS ci ratio: 8.508520e-03	ci left: 4.346844e-02	ci right 4.384008e-02	k: 202991	n:4650000
CSRNP3   4650000 perm   10152 sec   (458 perm/sec)   p_kst 4.365398e-02   p_cons 1.159140e-04   p_joint 1.807742e-03

Joint ci ratio: 4.268634e-02	ci left: 1.767874e-03	ci right 1.845194e-03	k: 8417	n:4660000
Cons ci ratio: 1.686801e-01	ci left: 1.061059e-04	ci right 1.258545e-04	k: 539	n:4660000
KS ci ratio: 8.499638e-03	ci left: 4.346617e-02	ci right 4.383740e-02	k: 203416	n:4660000
CSRNP3   4660000 perm   10194 sec   (457 perm/sec)   p_kst 4.365150e-02   p_cons 1.156652e-04   p_joint 1.806223e-03

Joint ci ratio: 4.264331e-02	ci left: 1.767689e-03	ci right 1.844922e-03	k: 8434	n:4670000
Cons ci ratio: 1.686802e-01	ci left: 1.058787e-04	ci right 1.255850e-04	k: 539	n:4670000
KS ci ratio: 8.490740e-03	ci left: 4.346434e-02	ci right 4.383516e-02	k: 203843	n:4670000
CSRNP3   4670000 perm   10235 sec   (456 perm/sec)   p_kst 4.364946e-02   p_cons 1.154176e-04   p_joint 1.805996e-03

Joint ci ratio: 4.259788e-02	ci left: 1.767717e-03	ci right 1.844867e-03	k: 8452	n:4680000
Cons ci ratio: 1.685242e-01	ci left: 1.058571e-04	ci right 1.255394e-04	k: 540	n:4680000
KS ci ratio: 8.482478e-03	ci left: 4.345654e-02	ci right 4.382693e-02	k: 204242	n:4680000
CSRNP3   4680000 perm   10277 sec   (455 perm/sec)   p_kst 4.364145e-02   p_cons 1.153846e-04   p_joint 1.805983e-03

Joint ci ratio: 4.255009e-02	ci left: 1.767956e-03	ci right 1.845027e-03	k: 8471	n:4690000
Cons ci ratio: 1.683687e-01	ci left: 1.058356e-04	ci right 1.254939e-04	k: 541	n:4690000
KS ci ratio: 8.472639e-03	ci left: 4.346452e-02	ci right 4.383455e-02	k: 204715	n:4690000
CSRNP3   4690000 perm   10319 sec   (454 perm/sec)   p_kst 4.364925e-02   p_cons 1.153518e-04   p_joint 1.806183e-03

Joint ci ratio: 4.258795e-02	ci left: 1.761037e-03	ci right 1.837877e-03	k: 8456	n:4700000
Cons ci ratio: 1.683687e-01	ci left: 1.056105e-04	ci right 1.252269e-04	k: 541	n:4700000
KS ci ratio: 8.463868e-03	ci left: 4.346228e-02	ci right 4.383190e-02	k: 205140	n:4700000
CSRNP3   4700000 perm   10361 sec   (454 perm/sec)   p_kst 4.364681e-02   p_cons 1.151064e-04   p_joint 1.799149e-03

Joint ci ratio: 4.254270e-02	ci left: 1.761079e-03	ci right 1.837837e-03	k: 8474	n:4710000
Cons ci ratio: 1.683687e-01	ci left: 1.053862e-04	ci right 1.249610e-04	k: 541	n:4710000
KS ci ratio: 8.455018e-03	ci left: 4.346110e-02	ci right 4.383033e-02	k: 205570	n:4710000
CSRNP3   4710000 perm   10403 sec   (453 perm/sec)   p_kst 4.364544e-02   p_cons 1.148620e-04   p_joint 1.799151e-03

Joint ci ratio: 4.248257e-02	ci left: 1.762379e-03	ci right 1.839082e-03	k: 8498	n:4720000
Cons ci ratio: 1.683687e-01	ci left: 1.051629e-04	ci right 1.246963e-04	k: 541	n:4720000
KS ci ratio: 8.445980e-03	ci left: 4.346205e-02	ci right 4.383089e-02	k: 206010	n:4720000
CSRNP3   4720000 perm   10445 sec   (452 perm/sec)   p_kst 4.364619e-02   p_cons 1.146186e-04   p_joint 1.800424e-03

Joint ci ratio: 4.243765e-02	ci left: 1.762418e-03	ci right 1.839040e-03	k: 8516	n:4730000
Cons ci ratio: 1.680589e-01	ci left: 1.053456e-04	ci right 1.248733e-04	k: 543	n:4730000
KS ci ratio: 8.437228e-03	ci left: 4.346046e-02	ci right 4.382890e-02	k: 206438	n:4730000
CSRNP3   4730000 perm   10486 sec   (451 perm/sec)   p_kst 4.364440e-02   p_cons 1.147992e-04   p_joint 1.800423e-03

Joint ci ratio: 4.239288e-02	ci left: 1.762457e-03	ci right 1.838998e-03	k: 8534	n:4740000
Cons ci ratio: 1.680590e-01	ci left: 1.051234e-04	ci right 1.246098e-04	k: 543	n:4740000
KS ci ratio: 8.428653e-03	ci left: 4.345740e-02	ci right 4.382544e-02	k: 206859	n:4740000
CSRNP3   4740000 perm   10528 sec   (450 perm/sec)   p_kst 4.364114e-02   p_cons 1.145570e-04   p_joint 1.800422e-03

Joint ci ratio: 4.234577e-02	ci left: 1.762704e-03	ci right 1.839168e-03	k: 8553	n:4750000
Cons ci ratio: 1.680590e-01	ci left: 1.049021e-04	ci right 1.243475e-04	k: 543	n:4750000
KS ci ratio: 8.419530e-03	ci left: 4.346003e-02	ci right 4.382769e-02	k: 207307	n:4750000
CSRNP3   4750000 perm   10569 sec   (449 perm/sec)   p_kst 4.364358e-02   p_cons 1.143158e-04   p_joint 1.800632e-03

Joint ci ratio: 4.229881e-02	ci left: 1.762950e-03	ci right 1.839338e-03	k: 8572	n:4760000
Cons ci ratio: 1.679047e-01	ci left: 1.048830e-04	ci right 1.243052e-04	k: 544	n:4760000
KS ci ratio: 8.410775e-03	ci left: 4.345929e-02	ci right 4.382656e-02	k: 207739	n:4760000
CSRNP3   4760000 perm   10611 sec   (449 perm/sec)   p_kst 4.364265e-02   p_cons 1.142857e-04   p_joint 1.800840e-03

Joint ci ratio: 4.251555e-02	ci left: 1.741208e-03	ci right 1.817050e-03	k: 8485	n:4770000
Cons ci ratio: 1.679047e-01	ci left: 1.046631e-04	ci right 1.240446e-04	k: 544	n:4770000
KS ci ratio: 8.401520e-03	ci left: 4.346378e-02	ci right 4.383069e-02	k: 208196	n:4770000
CSRNP3   4770000 perm   10653 sec   (448 perm/sec)   p_kst 4.364696e-02   p_cons 1.140461e-04   p_joint 1.778826e-03

Joint ci ratio: 4.247304e-02	ci left: 1.741084e-03	ci right 1.816843e-03	k: 8502	n:4780000
Cons ci ratio: 1.675975e-01	ci left: 1.048450e-04	ci right 1.242210e-04	k: 546	n:4780000
KS ci ratio: 8.391980e-03	ci left: 4.347139e-02	ci right 4.383795e-02	k: 208668	n:4780000
CSRNP3   4780000 perm   10696 sec   (447 perm/sec)   p_kst 4.365439e-02   p_cons 1.142259e-04   p_joint 1.778661e-03

Joint ci ratio: 4.243314e-02	ci left: 1.740754e-03	ci right 1.816426e-03	k: 8518	n:4790000
Cons ci ratio: 1.674445e-01	ci left: 1.048261e-04	ci right 1.241792e-04	k: 547	n:4790000
KS ci ratio: 8.383416e-03	ci left: 4.346960e-02	ci right 4.383576e-02	k: 209095	n:4790000
CSRNP3   4790000 perm   10738 sec   (446 perm/sec)   p_kst 4.365240e-02   p_cons 1.141962e-04   p_joint 1.778288e-03

Joint ci ratio: 4.240082e-02	ci left: 1.739807e-03	ci right 1.815379e-03	k: 8531	n:4800000
Cons ci ratio: 1.672919e-01	ci left: 1.048073e-04	ci right 1.241375e-04	k: 548	n:4800000
KS ci ratio: 8.374961e-03	ci left: 4.346698e-02	ci right 4.383274e-02	k: 209518	n:4800000
CSRNP3   4800000 perm   10781 sec   (445 perm/sec)   p_kst 4.364958e-02   p_cons 1.141667e-04   p_joint 1.777292e-03

Joint ci ratio: 4.237355e-02	ci left: 1.738453e-03	ci right 1.813916e-03	k: 8542	n:4810000
Cons ci ratio: 1.672920e-01	ci left: 1.045894e-04	ci right 1.238794e-04	k: 548	n:4810000
KS ci ratio: 8.366636e-03	ci left: 4.346333e-02	ci right 4.382870e-02	k: 209936	n:4810000
CSRNP3   4810000 perm   10823 sec   (444 perm/sec)   p_kst 4.364574e-02   p_cons 1.139293e-04   p_joint 1.775884e-03

Joint ci ratio: 4.234384e-02	ci left: 1.737310e-03	ci right 1.812669e-03	k: 8554	n:4820000
Cons ci ratio: 1.672920e-01	ci left: 1.043724e-04	ci right 1.236224e-04	k: 548	n:4820000
KS ci ratio: 8.358211e-03	ci left: 4.346094e-02	ci right 4.382592e-02	k: 210360	n:4820000
CSRNP3   4820000 perm   10866 sec   (444 perm/sec)   p_kst 4.364315e-02   p_cons 1.136929e-04   p_joint 1.774689e-03

Joint ci ratio: 4.229936e-02	ci left: 1.737400e-03	ci right 1.812682e-03	k: 8572	n:4830000
Cons ci ratio: 1.671398e-01	ci left: 1.043547e-04	ci right 1.235822e-04	k: 549	n:4830000
KS ci ratio: 8.349294e-03	ci left: 4.346372e-02	ci right 4.382834e-02	k: 210809	n:4830000
CSRNP3   4830000 perm   10909 sec   (443 perm/sec)   p_kst 4.364576e-02   p_cons 1.136646e-04   p_joint 1.774741e-03

Joint ci ratio: 4.225749e-02	ci left: 1.737286e-03	ci right 1.812486e-03	k: 8589	n:4840000
Cons ci ratio: 1.669881e-01	ci left: 1.043371e-04	ci right 1.235421e-04	k: 550	n:4840000
KS ci ratio: 8.340055e-03	ci left: 4.347000e-02	ci right 4.383426e-02	k: 211275	n:4840000
CSRNP3   4840000 perm   10952 sec   (442 perm/sec)   p_kst 4.365186e-02   p_cons 1.136364e-04   p_joint 1.774587e-03

Joint ci ratio: 4.220837e-02	ci left: 1.737784e-03	ci right 1.812916e-03	k: 8609	n:4850000
Cons ci ratio: 1.668368e-01	ci left: 1.043195e-04	ci right 1.235022e-04	k: 551	n:4850000
KS ci ratio: 8.331772e-03	ci left: 4.346700e-02	ci right 4.383087e-02	k: 211696	n:4850000
CSRNP3   4850000 perm   10995 sec   (441 perm/sec)   p_kst 4.364866e-02   p_cons 1.136082e-04   p_joint 1.775052e-03

Joint ci ratio: 4.216922e-02	ci left: 1.737465e-03	ci right 1.812513e-03	k: 8625	n:4860000
Cons ci ratio: 1.666859e-01	ci left: 1.043020e-04	ci right 1.234624e-04	k: 552	n:4860000
KS ci ratio: 8.323616e-03	ci left: 4.346298e-02	ci right 4.382646e-02	k: 212112	n:4860000
CSRNP3   4860000 perm   11038 sec   (440 perm/sec)   p_kst 4.364444e-02   p_cons 1.135802e-04   p_joint 1.774691e-03

Joint ci ratio: 4.212773e-02	ci left: 1.737352e-03	ci right 1.812319e-03	k: 8642	n:4870000
Cons ci ratio: 1.663852e-01	ci left: 1.044814e-04	ci right 1.236366e-04	k: 554	n:4870000
KS ci ratio: 8.314829e-03	ci left: 4.346553e-02	ci right 4.382865e-02	k: 212560	n:4870000
CSRNP3   4870000 perm   11081 sec   (439 perm/sec)   p_kst 4.364682e-02   p_cons 1.137577e-04   p_joint 1.774538e-03

Joint ci ratio: 4.208636e-02	ci left: 1.737238e-03	ci right 1.812125e-03	k: 8659	n:4880000
Cons ci ratio: 1.663853e-01	ci left: 1.042673e-04	ci right 1.233833e-04	k: 554	n:4880000
KS ci ratio: 8.306315e-03	ci left: 4.346562e-02	ci right 4.382836e-02	k: 212996	n:4880000
CSRNP3   4880000 perm   11124 sec   (439 perm/sec)   p_kst 4.364672e-02   p_cons 1.135246e-04   p_joint 1.774385e-03

Joint ci ratio: 4.201360e-02	ci left: 1.739756e-03	ci right 1.814619e-03	k: 8689	n:4890000
Cons ci ratio: 1.662356e-01	ci left: 1.042501e-04	ci right 1.233440e-04	k: 555	n:4890000
KS ci ratio: 8.297644e-03	ci left: 4.346755e-02	ci right 4.382993e-02	k: 213441	n:4890000
CSRNP3   4890000 perm   11168 sec   (438 perm/sec)   p_kst 4.364847e-02   p_cons 1.134969e-04   p_joint 1.776892e-03

Joint ci ratio: 4.197015e-02	ci left: 1.739841e-03	ci right 1.814628e-03	k: 8707	n:4900000
Cons ci ratio: 1.660863e-01	ci left: 1.042329e-04	ci right 1.233048e-04	k: 556	n:4900000
KS ci ratio: 8.289690e-03	ci left: 4.346254e-02	ci right 4.382453e-02	k: 213852	n:4900000
CSRNP3   4900000 perm   11212 sec   (437 perm/sec)   p_kst 4.364327e-02   p_cons 1.134694e-04   p_joint 1.776939e-03

Joint ci ratio: 4.191001e-02	ci left: 1.741336e-03	ci right 1.816077e-03	k: 8732	n:4910000
Cons ci ratio: 1.657889e-01	ci left: 1.044111e-04	ci right 1.234779e-04	k: 558	n:4910000
KS ci ratio: 8.280626e-03	ci left: 4.346894e-02	ci right 4.383058e-02	k: 214319	n:4910000
CSRNP3   4910000 perm   11256 sec   (436 perm/sec)   p_kst 4.364949e-02   p_cons 1.136456e-04   p_joint 1.778411e-03

Joint ci ratio: 4.185730e-02	ci left: 1.742221e-03	ci right 1.816904e-03	k: 8754	n:4920000
Cons ci ratio: 1.656408e-01	ci left: 1.043937e-04	ci right 1.234386e-04	k: 559	n:4920000
KS ci ratio: 8.272136e-03	ci left: 4.346983e-02	ci right 4.383111e-02	k: 214759	n:4920000
CSRNP3   4920000 perm   11300 sec   (435 perm/sec)   p_kst 4.365020e-02   p_cons 1.136179e-04   p_joint 1.779268e-03

Joint ci ratio: 4.181434e-02	ci left: 1.742300e-03	ci right 1.816908e-03	k: 8772	n:4930000
Cons ci ratio: 1.653458e-01	ci left: 1.045708e-04	ci right 1.236107e-04	k: 561	n:4930000
KS ci ratio: 8.263371e-03	ci left: 4.347376e-02	ci right 4.383469e-02	k: 215214	n:4930000
CSRNP3   4930000 perm   11343 sec   (435 perm/sec)   p_kst 4.365396e-02   p_cons 1.137931e-04   p_joint 1.779310e-03

Joint ci ratio: 4.175961e-02	ci left: 1.743380e-03	ci right 1.817934e-03	k: 8795	n:4940000
Cons ci ratio: 1.646151e-01	ci left: 1.053295e-04	ci right 1.244144e-04	k: 566	n:4940000
KS ci ratio: 8.254854e-03	ci left: 4.347545e-02	ci right 4.383602e-02	k: 215658	n:4940000
CSRNP3   4940000 perm   11388 sec   (434 perm/sec)   p_kst 4.365547e-02   p_cons 1.145749e-04   p_joint 1.780364e-03

Joint ci ratio: 4.185034e-02	ci left: 1.732262e-03	ci right 1.806505e-03	k: 8757	n:4950000
Cons ci ratio: 1.646151e-01	ci left: 1.051167e-04	ci right 1.241630e-04	k: 566	n:4950000
KS ci ratio: 8.246542e-03	ci left: 4.347532e-02	ci right 4.383552e-02	k: 216093	n:4950000
CSRNP3   4950000 perm   11432 sec   (433 perm/sec)   p_kst 4.365515e-02   p_cons 1.143434e-04   p_joint 1.769091e-03

Joint ci ratio: 4.181217e-02	ci left: 1.731961e-03	ci right 1.806122e-03	k: 8773	n:4960000
Cons ci ratio: 1.644701e-01	ci left: 1.050981e-04	ci right 1.241226e-04	k: 567	n:4960000
KS ci ratio: 8.238654e-03	ci left: 4.347116e-02	ci right 4.383098e-02	k: 216508	n:4960000
CSRNP3   4960000 perm   11477 sec   (432 perm/sec)   p_kst 4.365081e-02   p_cons 1.143145e-04   p_joint 1.768750e-03

Joint ci ratio: 4.174320e-02	ci left: 1.734251e-03	ci right 1.808384e-03	k: 8802	n:4970000
Cons ci ratio: 1.643255e-01	ci left: 1.050795e-04	ci right 1.240823e-04	k: 568	n:4970000
KS ci ratio: 8.229915e-03	ci left: 4.347586e-02	ci right 4.383534e-02	k: 216967	n:4970000
CSRNP3   4970000 perm   11521 sec   (431 perm/sec)   p_kst 4.365533e-02   p_cons 1.142857e-04   p_joint 1.771026e-03

Joint ci ratio: 4.168875e-02	ci left: 1.735338e-03	ci right 1.809420e-03	k: 8825	n:4980000
Cons ci ratio: 1.641813e-01	ci left: 1.050611e-04	ci right 1.240422e-04	k: 569	n:4980000
KS ci ratio: 8.221936e-03	ci left: 4.347312e-02	ci right 4.383223e-02	k: 217389	n:4980000
CSRNP3   4980000 perm   11566 sec   (431 perm/sec)   p_kst 4.365241e-02   p_cons 1.142570e-04   p_joint 1.772088e-03

Joint ci ratio: 4.163923e-02	ci left: 1.736025e-03	ci right 1.810046e-03	k: 8846	n:4990000
Cons ci ratio: 1.641813e-01	ci left: 1.048505e-04	ci right 1.237937e-04	k: 569	n:4990000
KS ci ratio: 8.213250e-03	ci left: 4.347780e-02	ci right 4.383656e-02	k: 217848	n:4990000
CSRNP3   4990000 perm   11609 sec   (430 perm/sec)   p_kst 4.365691e-02   p_cons 1.140281e-04   p_joint 1.772745e-03

Joint ci ratio: 4.158753e-02	ci left: 1.736908e-03	ci right 1.810871e-03	k: 8868	n:5000000
Cons ci ratio: 1.641814e-01	ci left: 1.046408e-04	ci right 1.235461e-04	k: 569	n:5000000
KS ci ratio: 8.204887e-03	ci left: 4.347946e-02	ci right 4.383787e-02	k: 218292	n:5000000
CSRNP3   5000000 perm   11653 sec   (429 perm/sec)   p_kst 4.365840e-02   p_cons 1.138000e-04   p_joint 1.773600e-03

Outputting figure to mutsig2_images.part000000000044/CSRNP3.6_1774_5000000_0.043658_0.0001138_0.0017736.png
                gene_name: CSRNP3
               theta_stop: 0.16 
                    nperm: 5000000 
                     p_ks: 0.044 
        ci_ks_bounds_left: 0.043 
       ci_ks_bounds_right: 0.044 
                   p_cons: 0.00011 
      ci_cons_bounds_left: 0.00010 
     ci_cons_bounds_right: 0.00012 
                  p_joint: 0.0018 
     ci_joint_bounds_left: 0.0017 
    ci_joint_bounds_right: 0.0018 

Current progress: 19 percent done.
CSF2RB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.176870e-02	ci left: 7.558549e-01	ci right 7.725909e-01	k: 7643	n:10000
KS ci ratio: 1.255649e-02	ci left: 9.011385e-01	ci right 9.126232e-01	k: 9070	n:10000
CSF2RB   10000 perm   2 sec   (4833 perm/sec)   p_kst 9.070000e-01   p_cons 7.643000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000044/CSF2RB.5_2746_10000_0.907_0.7643_1.png
                gene_name: CSF2RB
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 21 percent done.
CSNK1A1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.747133e-02	ci left: 8.268655e-01	ci right 8.415392e-01	k: 8343	n:10000
KS ci ratio: 8.566287e-03	ci left: 9.502311e-01	ci right 9.585016e-01	k: 9545	n:10000
CSNK1A1L   10000 perm   2 sec   (5563 perm/sec)   p_kst 9.545000e-01   p_cons 8.343000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000044/CSNK1A1L.5_1018_10000_0.9545_0.8343_1.png
                gene_name: CSNK1A1L
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 23 percent done.
CSPP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.921421e-02	ci left: 7.984155e-01	ci right 8.140057e-01	k: 8063	n:10000
Cons ci ratio: 2.939100e-02	ci left: 6.306030e-01	ci right 6.495153e-01	k: 6401	n:10000
KS ci ratio: 2.059430e-02	ci left: 7.754984e-01	ci right 7.917361e-01	k: 7837	n:10000
CSPP1   10000 perm   2 sec   (4658 perm/sec)   p_kst 7.837000e-01   p_cons 6.401000e-01   p_joint 8.063000e-01

Outputting figure to mutsig2_images.part000000000044/CSPP1.5_3895_10000_0.7837_0.6401_0.8063.png
                gene_name: CSPP1
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 26 percent done.
CTAGE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.764659e-02	ci left: 1.951537e-01	ci right 2.110196e-01	k: 2030	n:10000
Cons ci ratio: 1.751436e-01	ci left: 4.350916e-02	ci right 5.195681e-02	k: 476	n:10000
KS ci ratio: 1.296142e-02	ci left: 8.954920e-01	ci right 9.072730e-01	k: 9015	n:10000
CTAGE1   10000 perm   2 sec   (5428 perm/sec)   p_kst 9.015000e-01   p_cons 4.760000e-02   p_joint 2.030000e-01

Joint ci ratio: 4.550218e-02	ci left: 2.644515e-01	ci right 2.768152e-01	k: 5412	n:20000
Cons ci ratio: 1.258701e-01	ci left: 4.333189e-02	ci right 4.920094e-02	k: 924	n:20000
KS ci ratio: 9.256275e-03	ci left: 8.954535e-01	ci right 9.038299e-01	k: 17994	n:20000
CTAGE1   20000 perm   4 sec   (4859 perm/sec)   p_kst 8.997000e-01   p_cons 4.620000e-02   p_joint 2.706000e-01

Joint ci ratio: 3.715403e-02	ci left: 2.655784e-01	ci right 2.756660e-01	k: 8118	n:30000
Cons ci ratio: 1.020619e-01	ci left: 4.446981e-02	ci right 4.928509e-02	k: 1405	n:30000
KS ci ratio: 7.553162e-03	ci left: 8.963467e-01	ci right 9.031756e-01	k: 26994	n:30000
CTAGE1   30000 perm   6 sec   (4622 perm/sec)   p_kst 8.998000e-01   p_cons 4.683333e-02   p_joint 2.706000e-01

Joint ci ratio: 3.528463e-02	ci left: 2.316219e-01	ci right 2.399664e-01	k: 9431	n:40000
Cons ci ratio: 7.666478e-02	ci left: 5.899318e-02	ci right 6.372075e-02	k: 2453	n:40000
KS ci ratio: 6.523830e-03	ci left: 8.972970e-01	ci right 9.031947e-01	k: 36011	n:40000
CTAGE1   40000 perm   9 sec   (4469 perm/sec)   p_kst 9.002750e-01   p_cons 6.132500e-02   p_joint 2.357750e-01

Outputting figure to mutsig2_images.part000000000044/CTAGE1.4_2242_40000_0.90028_0.061325_0.23578.png
                gene_name: CTAGE1
               theta_stop: 0.077 
                    nperm: 40000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.061 
      ci_cons_bounds_left: 0.059 
     ci_cons_bounds_right: 0.064 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 28 percent done.
CTAGE5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.674428e-02	ci left: 4.031269e-01	ci right 4.225239e-01	k: 4128	n:10000
Cons ci ratio: 7.353110e-02	ci left: 2.130972e-01	ci right 2.294655e-01	k: 2212	n:10000
KS ci ratio: 5.510623e-02	ci left: 3.266419e-01	ci right 3.452538e-01	k: 3359	n:10000
CTAGE5   10000 perm   2 sec   (5658 perm/sec)   p_kst 3.359000e-01   p_cons 2.212000e-01   p_joint 4.128000e-01

Outputting figure to mutsig2_images.part000000000044/CTAGE5.4_2542_10000_0.3359_0.2212_0.4128.png
                gene_name: CTAGE5
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 30 percent done.
CTBS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.457788e-02	ci left: 7.088662e-01	ci right 7.266068e-01	k: 7178	n:10000
Cons ci ratio: 4.480136e-03	ci left: 9.847992e-01	ci right 9.893104e-01	k: 9872	n:10000
KS ci ratio: 4.335612e-02	ci left: 4.399157e-01	ci right 4.595136e-01	k: 4497	n:10000
CTBS   10000 perm   2 sec   (5810 perm/sec)   p_kst 4.497000e-01   p_cons 9.872000e-01   p_joint 7.178000e-01

Outputting figure to mutsig2_images.part000000000044/CTBS.4_1186_10000_0.4497_0.9872_0.7178.png
                gene_name: CTBS
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 32 percent done.
CTNNB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.962467e-03	ci left: 9.345442e-01	ci right 9.439979e-01	k: 9394	n:10000
KS ci ratio: 9.075657e-03	ci left: 9.447135e-01	ci right 9.534225e-01	k: 9492	n:10000
CTNNB1   10000 perm   2 sec   (5422 perm/sec)   p_kst 9.492000e-01   p_cons 9.394000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000044/CTNNB1.4_2402_10000_0.9492_0.9394_1.png
                gene_name: CTNNB1
               theta_stop: 0.0100 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 34 percent done.
CTNND1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.824610e-02	ci left: 6.488086e-01	ci right 6.674992e-01	k: 6582	n:10000
Cons ci ratio: 3.373175e-02	ci left: 5.647390e-01	ci right 5.842175e-01	k: 5745	n:10000
KS ci ratio: 4.822146e-02	ci left: 3.881880e-01	ci right 4.074716e-01	k: 3978	n:10000
CTNND1   10000 perm   2 sec   (5094 perm/sec)   p_kst 3.978000e-01   p_cons 5.745000e-01   p_joint 6.582000e-01

Outputting figure to mutsig2_images.part000000000044/CTNND1.4_2983_10000_0.3978_0.5745_0.6582.png
                gene_name: CTNND1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 36 percent done.
CSGALNACT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.887004e-02	ci left: 6.388490e-01	ci right 6.576645e-01	k: 6483	n:10000
KS ci ratio: 1.004954e-02	ci left: 9.335086e-01	ci right 9.430341e-01	k: 9384	n:10000
CSGALNACT2   10000 perm   2 sec   (5933 perm/sec)   p_kst 9.384000e-01   p_cons 6.483000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000044/CSGALNACT2.3_1657_10000_0.9384_0.6483_1.png
                gene_name: CSGALNACT2
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 38 percent done.
CSH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.220289e-01	ci left: 1.224928e-02	ci right 1.703957e-02	k: 145	n:10000
Cons ci ratio: 1.554831e-02	ci left: 8.572275e-01	ci right 8.707597e-01	k: 8641	n:10000
KS ci ratio: 8.756181e-01	ci left: 1.144300e-03	ci right 2.965502e-03	k: 19	n:10000
CSH2   10000 perm   1 sec   (6868 perm/sec)   p_kst 1.900000e-03   p_cons 8.641000e-01   p_joint 1.450000e-02

Joint ci ratio: 3.991121e-01	ci left: 3.844683e-03	ci right 5.803559e-03	k: 95	n:20000
Cons ci ratio: 1.102617e-02	ci left: 8.585626e-01	ci right 8.681315e-01	k: 17268	n:20000
KS ci ratio: 6.438316e-01	ci left: 1.261006e-03	ci right 2.491096e-03	k: 36	n:20000
CSH2   20000 perm   3 sec   (5966 perm/sec)   p_kst 1.800000e-03   p_cons 8.634000e-01   p_joint 4.750000e-03

Joint ci ratio: 2.609321e-01	ci left: 6.492622e-03	ci right 8.471224e-03	k: 223	n:30000
Cons ci ratio: 9.014038e-03	ci left: 8.591584e-01	ci right 8.669711e-01	k: 25893	n:30000
KS ci ratio: 5.431258e-01	ci left: 1.266016e-03	ci right 2.234588e-03	k: 51	n:30000
CSH2   30000 perm   5 sec   (5629 perm/sec)   p_kst 1.700000e-03   p_cons 8.631000e-01   p_joint 7.433333e-03

Joint ci ratio: 2.395472e-01	ci left: 5.853483e-03	ci right 7.469389e-03	k: 265	n:40000
Cons ci ratio: 7.799677e-03	ci left: 8.598946e-01	ci right 8.666526e-01	k: 34532	n:40000
KS ci ratio: 4.583767e-01	ci left: 1.408647e-03	ci right 2.266273e-03	k: 72	n:40000
CSH2   40000 perm   7 sec   (5419 perm/sec)   p_kst 1.800000e-03   p_cons 8.633000e-01   p_joint 6.625000e-03

Joint ci ratio: 2.070166e-01	ci left: 6.382787e-03	ci right 7.875297e-03	k: 355	n:50000
Cons ci ratio: 6.970276e-03	ci left: 8.604596e-01	ci right 8.664981e-01	k: 43175	n:50000
KS ci ratio: 4.175014e-01	ci left: 1.393896e-03	ci right 2.145847e-03	k: 87	n:50000
CSH2   50000 perm   10 sec   (5245 perm/sec)   p_kst 1.740000e-03   p_cons 8.635000e-01   p_joint 7.100000e-03

Joint ci ratio: 1.802985e-01	ci left: 7.111642e-03	ci right 8.536584e-03	k: 468	n:60000
Cons ci ratio: 6.384054e-03	ci left: 8.599371e-01	ci right 8.654611e-01	k: 51763	n:60000
KS ci ratio: 3.717225e-01	ci left: 1.507011e-03	ci right 2.209247e-03	k: 110	n:60000
CSH2   60000 perm   12 sec   (5100 perm/sec)   p_kst 1.833333e-03   p_cons 8.627167e-01   p_joint 7.800000e-03

Joint ci ratio: 1.907004e-01	ci left: 5.427709e-03	ci right 6.585244e-03	k: 419	n:70000
Cons ci ratio: 5.932247e-03	ci left: 8.592645e-01	ci right 8.643912e-01	k: 60329	n:70000
KS ci ratio: 3.517120e-01	ci left: 1.460564e-03	ci right 2.096164e-03	k: 123	n:70000
CSH2   70000 perm   14 sec   (4972 perm/sec)   p_kst 1.757143e-03   p_cons 8.618429e-01   p_joint 5.985714e-03

Joint ci ratio: 1.883093e-01	ci left: 4.880089e-03	ci right 5.906282e-03	k: 430	n:80000
Cons ci ratio: 5.549510e-03	ci left: 8.594144e-01	ci right 8.642094e-01	k: 68946	n:80000
KS ci ratio: 3.621368e-01	ci left: 1.198307e-03	ci right 1.738885e-03	k: 116	n:80000
CSH2   80000 perm   16 sec   (4850 perm/sec)   p_kst 1.450000e-03   p_cons 8.618250e-01   p_joint 5.375000e-03

Joint ci ratio: 1.825018e-01	ci left: 4.634475e-03	ci right 5.575635e-03	k: 458	n:90000
Cons ci ratio: 5.221189e-03	ci left: 8.600539e-01	ci right 8.645672e-01	k: 77609	n:90000
KS ci ratio: 3.396540e-01	ci left: 1.227288e-03	ci right 1.739042e-03	k: 132	n:90000
CSH2   90000 perm   19 sec   (4745 perm/sec)   p_kst 1.466667e-03   p_cons 8.623222e-01   p_joint 5.088889e-03

Joint ci ratio: 1.733073e-01	ci left: 4.648776e-03	ci right 5.540302e-03	k: 508	n:100000
Cons ci ratio: 4.953710e-03	ci left: 8.601488e-01	ci right 8.644302e-01	k: 86230	n:100000
KS ci ratio: 3.219819e-01	ci left: 1.242111e-03	ci right 1.727543e-03	k: 147	n:100000
CSH2   100000 perm   22 sec   (4640 perm/sec)   p_kst 1.470000e-03   p_cons 8.623000e-01   p_joint 5.080000e-03

Joint ci ratio: 1.911386e-01	ci left: 3.444996e-03	ci right 4.181546e-03	k: 418	n:110000
Cons ci ratio: 4.728774e-03	ci left: 8.599660e-01	ci right 8.640512e-01	k: 94822	n:110000
KS ci ratio: 3.126253e-01	ci left: 1.204492e-03	ci right 1.658812e-03	k: 156	n:110000
CSH2   110000 perm   24 sec   (4544 perm/sec)   p_kst 1.418182e-03   p_cons 8.620182e-01   p_joint 3.800000e-03

Joint ci ratio: 1.830196e-01	ci left: 3.459756e-03	ci right 4.164557e-03	k: 456	n:120000
Cons ci ratio: 4.528431e-03	ci left: 8.600021e-01	ci right 8.639137e-01	k: 103436	n:120000
KS ci ratio: 3.031263e-01	ci left: 1.181012e-03	ci right 1.610332e-03	k: 166	n:120000
CSH2   120000 perm   27 sec   (4457 perm/sec)   p_kst 1.383333e-03   p_cons 8.619667e-01   p_joint 3.800000e-03

Joint ci ratio: 1.742712e-01	ci left: 3.539013e-03	ci right 4.221872e-03	k: 503	n:130000
Cons ci ratio: 4.356911e-03	ci left: 8.597419e-01	ci right 8.635035e-01	k: 112012	n:130000
KS ci ratio: 2.864514e-01	ci left: 1.232649e-03	ci right 1.651635e-03	k: 186	n:130000
CSH2   130000 perm   30 sec   (4369 perm/sec)   p_kst 1.430769e-03   p_cons 8.616308e-01   p_joint 3.869231e-03

Joint ci ratio: 1.693106e-01	ci left: 3.491292e-03	ci right 4.143810e-03	k: 533	n:140000
Cons ci ratio: 4.200974e-03	ci left: 8.596652e-01	ci right 8.632913e-01	k: 120608	n:140000
KS ci ratio: 2.749295e-01	ci left: 1.250848e-03	ci right 1.655966e-03	k: 202	n:140000
CSH2   140000 perm   33 sec   (4288 perm/sec)   p_kst 1.442857e-03   p_cons 8.614857e-01   p_joint 3.807143e-03

Joint ci ratio: 1.543781e-01	ci left: 3.949505e-03	ci right 4.616547e-03	k: 641	n:150000
Cons ci ratio: 4.052157e-03	ci left: 8.601035e-01	ci right 8.636025e-01	k: 129279	n:150000
KS ci ratio: 2.634925e-01	ci left: 1.279365e-03	ci right 1.673642e-03	k: 220	n:150000
CSH2   150000 perm   36 sec   (4208 perm/sec)   p_kst 1.466667e-03   p_cons 8.618600e-01   p_joint 4.273333e-03

Joint ci ratio: 1.414812e-01	ci left: 4.437064e-03	ci right 5.118572e-03	k: 763	n:160000
Cons ci ratio: 3.920659e-03	ci left: 8.603317e-01	ci right 8.637176e-01	k: 137925	n:160000
KS ci ratio: 2.549812e-01	ci left: 1.287065e-03	ci right 1.668865e-03	k: 235	n:160000
CSH2   160000 perm   39 sec   (4132 perm/sec)   p_kst 1.468750e-03   p_cons 8.620313e-01   p_joint 4.768750e-03

Joint ci ratio: 1.462906e-01	ci left: 3.898118e-03	ci right 4.518977e-03	k: 714	n:170000
Cons ci ratio: 3.803814e-03	ci left: 8.603691e-01	ci right 8.636538e-01	k: 146543	n:170000
KS ci ratio: 2.467530e-01	ci left: 1.299559e-03	ci right 1.670717e-03	k: 251	n:170000
CSH2   170000 perm   42 sec   (4057 perm/sec)   p_kst 1.476471e-03   p_cons 8.620176e-01   p_joint 4.200000e-03

Joint ci ratio: 1.497094e-01	ci left: 3.510308e-03	ci right 4.083634e-03	k: 682	n:180000
Cons ci ratio: 3.703904e-03	ci left: 8.599459e-01	ci right 8.631425e-01	k: 155079	n:180000
KS ci ratio: 2.424653e-01	ci left: 1.274294e-03	ci right 1.630961e-03	k: 260	n:180000
CSH2   180000 perm   45 sec   (3989 perm/sec)   p_kst 1.444444e-03   p_cons 8.615500e-01   p_joint 3.788889e-03

Joint ci ratio: 1.384744e-01	ci left: 3.909081e-03	ci right 4.495678e-03	k: 797	n:190000
Cons ci ratio: 3.606903e-03	ci left: 8.598699e-01	ci right 8.629822e-01	k: 163672	n:190000
KS ci ratio: 2.349333e-01	ci left: 1.291351e-03	ci right 1.639933e-03	k: 277	n:190000
CSH2   190000 perm   48 sec   (3919 perm/sec)   p_kst 1.457895e-03   p_cons 8.614316e-01   p_joint 4.194737e-03

Joint ci ratio: 1.409944e-01	ci left: 3.578478e-03	ci right 4.126057e-03	k: 769	n:200000
Cons ci ratio: 3.514934e-03	ci left: 8.599533e-01	ci right 8.629862e-01	k: 172295	n:200000
KS ci ratio: 2.304210e-01	ci left: 1.278577e-03	ci right 1.616138e-03	k: 288	n:200000
CSH2   200000 perm   52 sec   (3857 perm/sec)   p_kst 1.440000e-03   p_cons 8.614750e-01   p_joint 3.845000e-03

Joint ci ratio: 1.375538e-01	ci left: 3.587319e-03	ci right 4.121758e-03	k: 808	n:210000
Cons ci ratio: 3.430685e-03	ci left: 8.599579e-01	ci right 8.629179e-01	k: 180903	n:210000
KS ci ratio: 2.235621e-01	ci left: 1.298535e-03	ci right 1.629757e-03	k: 306	n:210000
CSH2   210000 perm   55 sec   (3792 perm/sec)   p_kst 1.457143e-03   p_cons 8.614429e-01   p_joint 3.847619e-03

Joint ci ratio: 1.333313e-01	ci left: 3.652623e-03	ci right 4.178762e-03	k: 860	n:220000
Cons ci ratio: 3.354386e-03	ci left: 8.598076e-01	ci right 8.627011e-01	k: 189477	n:220000
KS ci ratio: 2.189747e-01	ci left: 1.295327e-03	ci right 1.618038e-03	k: 319	n:220000
CSH2   220000 perm   59 sec   (3732 perm/sec)   p_kst 1.450000e-03   p_cons 8.612591e-01   p_joint 3.909091e-03

Joint ci ratio: 1.304105e-01	ci left: 3.657785e-03	ci right 4.172232e-03	k: 899	n:230000
Cons ci ratio: 3.282897e-03	ci left: 8.596755e-01	ci right 8.625067e-01	k: 198052	n:230000
KS ci ratio: 2.146586e-01	ci left: 1.292461e-03	ci right 1.607275e-03	k: 332	n:230000
CSH2   230000 perm   63 sec   (3671 perm/sec)   p_kst 1.443478e-03   p_cons 8.610957e-01   p_joint 3.908696e-03

Joint ci ratio: 1.289200e-01	ci left: 3.590031e-03	ci right 4.088736e-03	k: 920	n:240000
Cons ci ratio: 3.214780e-03	ci left: 8.596304e-01	ci right 8.624025e-01	k: 206645	n:240000
KS ci ratio: 2.090806e-01	ci left: 1.309630e-03	ci right 1.619277e-03	k: 350	n:240000
CSH2   240000 perm   66 sec   (3617 perm/sec)   p_kst 1.458333e-03   p_cons 8.610208e-01   p_joint 3.833333e-03

Joint ci ratio: 1.262081e-01	ci left: 3.601325e-03	ci right 4.090288e-03	k: 960	n:250000
Cons ci ratio: 3.154048e-03	ci left: 8.593365e-01	ci right 8.620551e-01	k: 215175	n:250000
KS ci ratio: 2.036398e-01	ci left: 1.329320e-03	ci right 1.634425e-03	k: 369	n:250000
CSH2   250000 perm   70 sec   (3561 perm/sec)   p_kst 1.476000e-03   p_cons 8.607000e-01   p_joint 3.840000e-03

Joint ci ratio: 1.060566e-01	ci left: 4.949612e-03	ci right 5.507658e-03	k: 1358	n:260000
Cons ci ratio: 2.979188e-03	ci left: 8.681335e-01	ci right 8.707275e-01	k: 226053	n:260000
KS ci ratio: 1.986028e-01	ci left: 1.347591e-03	ci right 1.648313e-03	k: 388	n:260000
CSH2   260000 perm   74 sec   (3510 perm/sec)   p_kst 1.492308e-03   p_cons 8.694346e-01   p_joint 5.223077e-03

Joint ci ratio: 9.877028e-02	ci left: 5.513421e-03	ci right 6.089857e-03	k: 1565	n:270000
Cons ci ratio: 2.920508e-03	ci left: 8.683909e-01	ci right 8.709344e-01	k: 234810	n:270000
KS ci ratio: 1.951230e-01	ci left: 1.346976e-03	ci right 1.641669e-03	k: 402	n:270000
CSH2   270000 perm   78 sec   (3457 perm/sec)   p_kst 1.488889e-03   p_cons 8.696667e-01   p_joint 5.796296e-03

Joint ci ratio: 9.595590e-02	ci left: 5.640587e-03	ci right 6.212569e-03	k: 1658	n:280000
Cons ci ratio: 2.868137e-03	ci left: 8.683937e-01	ci right 8.708915e-01	k: 243501	n:280000
KS ci ratio: 1.934529e-01	ci left: 1.322652e-03	ci right 1.609254e-03	k: 409	n:280000
CSH2   280000 perm   82 sec   (3407 perm/sec)   p_kst 1.460714e-03   p_cons 8.696464e-01   p_joint 5.921429e-03

Joint ci ratio: 9.667156e-02	ci left: 5.365282e-03	ci right 5.913634e-03	k: 1634	n:290000
Cons ci ratio: 2.818658e-03	ci left: 8.683828e-01	ci right 8.708374e-01	k: 252188	n:290000
KS ci ratio: 1.911375e-01	ci left: 1.309865e-03	ci right 1.589905e-03	k: 419	n:290000
CSH2   290000 perm   86 sec   (3360 perm/sec)   p_kst 1.444828e-03   p_cons 8.696138e-01   p_joint 5.634483e-03

Joint ci ratio: 1.032691e-01	ci left: 4.533071e-03	ci right 5.029904e-03	k: 1433	n:300000
Cons ci ratio: 2.769250e-03	ci left: 8.685705e-01	ci right 8.709824e-01	k: 260934	n:300000
KS ci ratio: 1.884649e-01	ci left: 1.304302e-03	ci right 1.578807e-03	k: 431	n:300000
CSH2   300000 perm   91 sec   (3311 perm/sec)   p_kst 1.436667e-03   p_cons 8.697800e-01   p_joint 4.776667e-03

Joint ci ratio: 1.271207e-01	ci left: 2.863618e-03	ci right 3.255440e-03	k: 947	n:310000
Cons ci ratio: 2.725180e-03	ci left: 8.685099e-01	ci right 8.708832e-01	k: 269607	n:310000
KS ci ratio: 1.859014e-01	ci left: 1.299123e-03	ci right 1.568400e-03	k: 443	n:310000
CSH2   310000 perm   95 sec   (3267 perm/sec)   p_kst 1.429032e-03   p_cons 8.697000e-01   p_joint 3.054839e-03

Joint ci ratio: 1.252201e-01	ci left: 2.861895e-03	ci right 3.247192e-03	k: 976	n:320000
Cons ci ratio: 2.681447e-03	ci left: 8.685977e-01	ci right 8.709331e-01	k: 278326	n:320000
KS ci ratio: 1.838439e-01	ci left: 1.288329e-03	ci right 1.552083e-03	k: 453	n:320000
CSH2   320000 perm   99 sec   (3221 perm/sec)   p_kst 1.415625e-03   p_cons 8.697687e-01   p_joint 3.050000e-03

Joint ci ratio: 1.232182e-01	ci left: 2.869128e-03	ci right 3.248773e-03	k: 1008	n:330000
Cons ci ratio: 2.640848e-03	ci left: 8.685862e-01	ci right 8.708861e-01	k: 287014	n:330000
KS ci ratio: 1.808798e-01	ci left: 1.292668e-03	ci right 1.552577e-03	k: 468	n:330000
CSH2   330000 perm   104 sec   (3176 perm/sec)   p_kst 1.418182e-03   p_cons 8.697394e-01   p_joint 3.054545e-03

Joint ci ratio: 1.217205e-01	ci left: 2.856017e-03	ci right 3.229003e-03	k: 1033	n:340000
Cons ci ratio: 2.602174e-03	ci left: 8.685638e-01	ci right 8.708298e-01	k: 295698	n:340000
KS ci ratio: 1.780547e-01	ci left: 1.296785e-03	ci right 1.553010e-03	k: 483	n:340000
CSH2   340000 perm   108 sec   (3136 perm/sec)   p_kst 1.420588e-03   p_cons 8.697000e-01   p_joint 3.038235e-03

Joint ci ratio: 1.206768e-01	ci left: 2.824283e-03	ci right 3.189736e-03	k: 1051	n:350000
Cons ci ratio: 2.564730e-03	ci left: 8.685803e-01	ci right 8.708136e-01	k: 304395	n:350000
KS ci ratio: 1.773261e-01	ci left: 1.270653e-03	ci right 1.520577e-03	k: 487	n:350000
CSH2   350000 perm   113 sec   (3094 perm/sec)   p_kst 1.391429e-03   p_cons 8.697000e-01   p_joint 3.002857e-03

Joint ci ratio: 1.193801e-01	ci left: 2.807800e-03	ci right 3.166941e-03	k: 1074	n:360000
Cons ci ratio: 2.527990e-03	ci left: 8.686740e-01	ci right 8.708756e-01	k: 313120	n:360000
KS ci ratio: 1.755376e-01	ci left: 1.261907e-03	ci right 1.507342e-03	k: 497	n:360000
CSH2   360000 perm   118 sec   (3054 perm/sec)   p_kst 1.380556e-03   p_cons 8.697778e-01   p_joint 2.983333e-03

Joint ci ratio: 1.179090e-01	ci left: 2.802720e-03	ci right 3.156486e-03	k: 1101	n:370000
Cons ci ratio: 2.492843e-03	ci left: 8.687575e-01	ci right 8.709286e-01	k: 321843	n:370000
KS ci ratio: 1.738022e-01	ci left: 1.253647e-03	ci right 1.494812e-03	k: 507	n:370000
CSH2   370000 perm   123 sec   (3016 perm/sec)   p_kst 1.370270e-03   p_cons 8.698459e-01   p_joint 2.975676e-03

Joint ci ratio: 1.165946e-01	ci left: 2.792824e-03	ci right 3.141140e-03	k: 1126	n:380000
Cons ci ratio: 2.461094e-03	ci left: 8.686546e-01	ci right 8.707977e-01	k: 330497	n:380000
KS ci ratio: 1.714556e-01	ci left: 1.255906e-03	ci right 1.493907e-03	k: 521	n:380000
CSH2   380000 perm   128 sec   (2979 perm/sec)   p_kst 1.371053e-03   p_cons 8.697289e-01   p_joint 2.963158e-03

Joint ci ratio: 1.152731e-01	ci left: 2.785946e-03	ci right 3.129198e-03	k: 1152	n:390000
Cons ci ratio: 2.430444e-03	ci left: 8.685648e-01	ci right 8.706809e-01	k: 339154	n:390000
KS ci ratio: 1.690438e-01	ci left: 1.260527e-03	ci right 1.495700e-03	k: 536	n:390000
CSH2   390000 perm   133 sec   (2941 perm/sec)   p_kst 1.374359e-03   p_cons 8.696256e-01   p_joint 2.953846e-03

Joint ci ratio: 1.136576e-01	ci left: 2.796436e-03	ci right 3.135828e-03	k: 1185	n:400000
Cons ci ratio: 2.399481e-03	ci left: 8.686152e-01	ci right 8.707044e-01	k: 347865	n:400000
KS ci ratio: 1.670342e-01	ci left: 1.260147e-03	ci right 1.492173e-03	k: 549	n:400000
CSH2   400000 perm   138 sec   (2908 perm/sec)   p_kst 1.372500e-03   p_cons 8.696625e-01   p_joint 2.962500e-03

Joint ci ratio: 1.127594e-01	ci left: 2.773257e-03	ci right 3.106999e-03	k: 1204	n:410000
Cons ci ratio: 2.370870e-03	ci left: 8.685483e-01	ci right 8.706123e-01	k: 356529	n:410000
KS ci ratio: 1.659827e-01	ci left: 1.245772e-03	ci right 1.473564e-03	k: 556	n:410000
CSH2   410000 perm   143 sec   (2872 perm/sec)   p_kst 1.356098e-03   p_cons 8.695829e-01   p_joint 2.936585e-03

Joint ci ratio: 1.111559e-01	ci left: 2.788228e-03	ci right 3.118688e-03	k: 1239	n:420000
Cons ci ratio: 2.342618e-03	ci left: 8.685468e-01	ci right 8.705862e-01	k: 365219	n:420000
KS ci ratio: 1.640791e-01	ci left: 1.245785e-03	ci right 1.470708e-03	k: 569	n:420000
CSH2   420000 perm   148 sec   (2837 perm/sec)   p_kst 1.354762e-03   p_cons 8.695690e-01   p_joint 2.950000e-03

Joint ci ratio: 1.098786e-01	ci left: 2.788963e-03	ci right 3.115466e-03	k: 1268	n:430000
Cons ci ratio: 2.314000e-03	ci left: 8.686785e-01	ci right 8.706932e-01	k: 373966	n:430000
KS ci ratio: 1.619616e-01	ci left: 1.250274e-03	ci right 1.472811e-03	k: 584	n:430000
CSH2   430000 perm   153 sec   (2805 perm/sec)   p_kst 1.358140e-03   p_cons 8.696884e-01   p_joint 2.948837e-03

Joint ci ratio: 1.084767e-01	ci left: 2.798531e-03	ci right 3.121706e-03	k: 1301	n:440000
Cons ci ratio: 2.287803e-03	ci left: 8.686653e-01	ci right 8.706571e-01	k: 382652	n:440000
KS ci ratio: 1.599240e-01	ci left: 1.254577e-03	ci right 1.474801e-03	k: 599	n:440000
CSH2   440000 perm   159 sec   (2774 perm/sec)   p_kst 1.361364e-03   p_cons 8.696636e-01   p_joint 2.956818e-03

Joint ci ratio: 1.073290e-01	ci left: 2.796884e-03	ci right 3.116236e-03	k: 1329	n:450000
Cons ci ratio: 2.261101e-03	ci left: 8.687910e-01	ci right 8.707598e-01	k: 391400	n:450000
KS ci ratio: 1.584784e-01	ci left: 1.250168e-03	ci right 1.467445e-03	k: 610	n:450000
CSH2   450000 perm   164 sec   (2742 perm/sec)   p_kst 1.355556e-03   p_cons 8.697778e-01   p_joint 2.953333e-03

Joint ci ratio: 1.063348e-01	ci left: 2.788977e-03	ci right 3.104292e-03	k: 1354	n:460000
Cons ci ratio: 2.234988e-03	ci left: 8.689440e-01	ci right 8.708904e-01	k: 400163	n:460000
KS ci ratio: 1.570712e-01	ci left: 1.245959e-03	ci right 1.460401e-03	k: 621	n:460000
CSH2   460000 perm   170 sec   (2712 perm/sec)   p_kst 1.350000e-03   p_cons 8.699196e-01   p_joint 2.943478e-03

Joint ci ratio: 1.049869e-01	ci left: 2.802138e-03	ci right 3.114677e-03	k: 1389	n:470000
Cons ci ratio: 2.210797e-03	ci left: 8.689840e-01	ci right 8.709093e-01	k: 408876	n:470000
KS ci ratio: 1.558242e-01	ci left: 1.239893e-03	ci right 1.451438e-03	k: 631	n:470000
CSH2   470000 perm   175 sec   (2681 perm/sec)   p_kst 1.342553e-03   p_cons 8.699489e-01   p_joint 2.955319e-03

Joint ci ratio: 9.219608e-02	ci left: 3.579047e-03	ci right 3.926986e-03	k: 1800	n:480000
Cons ci ratio: 2.188381e-03	ci left: 8.689179e-01	ci right 8.708235e-01	k: 417539	n:480000
KS ci ratio: 1.536508e-01	ci left: 1.250110e-03	ci right 1.460150e-03	k: 649	n:480000
CSH2   480000 perm   181 sec   (2651 perm/sec)   p_kst 1.352083e-03   p_cons 8.698729e-01   p_joint 3.750000e-03

Joint ci ratio: 9.113909e-02	ci left: 3.589755e-03	ci right 3.934521e-03	k: 1842	n:490000
Cons ci ratio: 2.165755e-03	ci left: 8.689467e-01	ci right 8.708326e-01	k: 426247	n:490000
KS ci ratio: 1.523673e-01	ci left: 1.246187e-03	ci right 1.453659e-03	k: 660	n:490000
CSH2   490000 perm   187 sec   (2622 perm/sec)   p_kst 1.346939e-03   p_cons 8.698918e-01   p_joint 3.759184e-03

Joint ci ratio: 8.610583e-02	ci left: 3.950202e-03	ci right 4.307582e-03	k: 2063	n:500000
Cons ci ratio: 2.144100e-03	ci left: 8.689443e-01	ci right 8.708114e-01	k: 434940	n:500000
KS ci ratio: 1.505557e-01	ci left: 1.252051e-03	ci right 1.457797e-03	k: 676	n:500000
CSH2   500000 perm   193 sec   (2595 perm/sec)   p_kst 1.352000e-03   p_cons 8.698800e-01   p_joint 4.126000e-03

Joint ci ratio: 8.522253e-02	ci left: 3.955255e-03	ci right 4.309238e-03	k: 2106	n:510000
Cons ci ratio: 2.122750e-03	ci left: 8.689776e-01	ci right 8.708261e-01	k: 443651	n:510000
KS ci ratio: 1.482725e-01	ci left: 1.267138e-03	ci right 1.471927e-03	k: 697	n:510000
CSH2   510000 perm   199 sec   (2566 perm/sec)   p_kst 1.366667e-03   p_cons 8.699039e-01   p_joint 4.129412e-03

Joint ci ratio: 8.851276e-02	ci left: 3.591321e-03	ci right 3.925784e-03	k: 1953	n:520000
Cons ci ratio: 2.102330e-03	ci left: 8.689768e-01	ci right 8.708075e-01	k: 452345	n:520000
KS ci ratio: 1.473264e-01	ci left: 1.259438e-03	ci right 1.461568e-03	k: 706	n:520000
CSH2   520000 perm   205 sec   (2539 perm/sec)   p_kst 1.357692e-03   p_cons 8.698942e-01   p_joint 3.755769e-03

Joint ci ratio: 8.757619e-02	ci left: 3.601062e-03	ci right 3.932701e-03	k: 1995	n:530000
Cons ci ratio: 2.082332e-03	ci left: 8.689932e-01	ci right 8.708065e-01	k: 461048	n:530000
KS ci ratio: 1.455860e-01	ci left: 1.266575e-03	ci right 1.467241e-03	k: 723	n:530000
CSH2   530000 perm   211 sec   (2512 perm/sec)   p_kst 1.364151e-03   p_cons 8.699019e-01   p_joint 3.764151e-03

Joint ci ratio: 8.654096e-02	ci left: 3.621330e-03	ci right 3.950695e-03	k: 2043	n:540000
Cons ci ratio: 2.061222e-03	ci left: 8.691930e-01	ci right 8.709882e-01	k: 469850	n:540000
KS ci ratio: 1.433259e-01	ci left: 1.284174e-03	ci right 1.484200e-03	k: 746	n:540000
CSH2   540000 perm   217 sec   (2487 perm/sec)   p_kst 1.381481e-03   p_cons 8.700926e-01   p_joint 3.783333e-03

Joint ci ratio: 9.981583e-02	ci left: 2.656748e-03	ci right 2.937621e-03	k: 1537	n:550000
Cons ci ratio: 2.020344e-03	ci left: 8.716430e-01	ci right 8.734076e-01	k: 479890	n:550000
KS ci ratio: 1.427548e-01	ci left: 1.271343e-03	ci right 1.468514e-03	k: 752	n:550000
CSH2   550000 perm   223 sec   (2461 perm/sec)   p_kst 1.367273e-03   p_cons 8.725273e-01   p_joint 2.794545e-03

Joint ci ratio: 1.021769e-01	ci left: 2.487452e-03	ci right 2.757020e-03	k: 1467	n:560000
Cons ci ratio: 2.001810e-03	ci left: 8.716970e-01	ci right 8.734455e-01	k: 488641	n:560000
KS ci ratio: 1.413537e-01	ci left: 1.274475e-03	ci right 1.470028e-03	k: 767	n:560000
CSH2   560000 perm   230 sec   (2437 perm/sec)   p_kst 1.369643e-03   p_cons 8.725732e-01   p_joint 2.619643e-03

Joint ci ratio: 1.011482e-01	ci left: 2.495106e-03	ci right 2.762620e-03	k: 1497	n:570000
Cons ci ratio: 1.984482e-03	ci left: 8.716701e-01	ci right 8.734033e-01	k: 497347	n:570000
KS ci ratio: 1.400826e-01	ci left: 1.275812e-03	ci right 1.469663e-03	k: 781	n:570000
CSH2   570000 perm   236 sec   (2412 perm/sec)   p_kst 1.370175e-03   p_cons 8.725386e-01   p_joint 2.626316e-03

Joint ci ratio: 9.704696e-02	ci left: 2.669002e-03	ci right 2.942898e-03	k: 1626	n:580000
Cons ci ratio: 1.966939e-03	ci left: 8.717185e-01	ci right 8.734364e-01	k: 506096	n:580000
KS ci ratio: 1.390202e-01	ci left: 1.273783e-03	ci right 1.465736e-03	k: 793	n:580000
CSH2   580000 perm   243 sec   (2387 perm/sec)   p_kst 1.367241e-03   p_cons 8.725793e-01   p_joint 2.803448e-03

Joint ci ratio: 9.943714e-02	ci left: 2.496452e-03	ci right 2.759318e-03	k: 1549	n:590000
Cons ci ratio: 1.950211e-03	ci left: 8.717245e-01	ci right 8.734278e-01	k: 514821	n:590000
KS ci ratio: 1.378105e-01	ci left: 1.275100e-03	ci right 1.465443e-03	k: 807	n:590000
CSH2   590000 perm   250 sec   (2363 perm/sec)   p_kst 1.367797e-03   p_cons 8.725780e-01   p_joint 2.625424e-03

Joint ci ratio: 9.845705e-02	ci left: 2.505233e-03	ci right 2.766273e-03	k: 1580	n:600000
Cons ci ratio: 1.934163e-03	ci left: 8.717002e-01	ci right 8.733895e-01	k: 523528	n:600000
KS ci ratio: 1.363829e-01	ci left: 1.281211e-03	ci right 1.470323e-03	k: 824	n:600000
CSH2   600000 perm   256 sec   (2339 perm/sec)   p_kst 1.373333e-03   p_cons 8.725467e-01   p_joint 2.633333e-03

Joint ci ratio: 5.242159e-02	ci left: 8.845418e-03	ci right 9.323196e-03	k: 5540	n:610000
Cons ci ratio: 1.918519e-03	ci left: 8.716752e-01	ci right 8.733508e-01	k: 532234	n:610000
KS ci ratio: 1.125336e-01	ci left: 1.873503e-03	ci right 2.098482e-03	k: 1210	n:610000
CSH2   610000 perm   263 sec   (2317 perm/sec)   p_kst 1.983607e-03   p_cons 8.725148e-01   p_joint 9.081967e-03

Joint ci ratio: 5.196842e-02	ci left: 8.857161e-03	ci right 9.331314e-03	k: 5637	n:620000
Cons ci ratio: 1.903179e-03	ci left: 8.716592e-01	ci right 8.733212e-01	k: 540945	n:620000
KS ci ratio: 1.113441e-01	ci left: 1.884047e-03	ci right 2.107744e-03	k: 1236	n:620000
CSH2   620000 perm   270 sec   (2295 perm/sec)   p_kst 1.993548e-03   p_cons 8.724919e-01   p_joint 9.091935e-03

Joint ci ratio: 5.157675e-02	ci left: 8.851311e-03	ci right 9.321473e-03	k: 5723	n:630000
Cons ci ratio: 1.888013e-03	ci left: 8.716659e-01	ci right 8.733148e-01	k: 549670	n:630000
KS ci ratio: 1.103668e-01	ci left: 1.888094e-03	ci right 2.110176e-03	k: 1258	n:630000
CSH2   630000 perm   277 sec   (2273 perm/sec)   p_kst 1.996825e-03   p_cons 8.724921e-01   p_joint 9.084127e-03

Joint ci ratio: 5.952251e-02	ci left: 6.530838e-03	ci right 6.933022e-03	k: 4307	n:640000
Cons ci ratio: 1.872611e-03	ci left: 8.717431e-01	ci right 8.733786e-01	k: 558440	n:640000
KS ci ratio: 1.096725e-01	ci left: 1.882904e-03	ci right 2.102893e-03	k: 1274	n:640000
CSH2   640000 perm   284 sec   (2253 perm/sec)   p_kst 1.990625e-03   p_cons 8.725625e-01   p_joint 6.729688e-03

Joint ci ratio: 5.907860e-02	ci left: 6.528880e-03	ci right 6.927843e-03	k: 4372	n:650000
Cons ci ratio: 1.858814e-03	ci left: 8.716698e-01	ci right 8.732931e-01	k: 567114	n:650000
KS ci ratio: 1.086124e-01	ci left: 1.891349e-03	ci right 2.110051e-03	k: 1299	n:650000
CSH2   650000 perm   291 sec   (2232 perm/sec)   p_kst 1.998462e-03   p_cons 8.724831e-01   p_joint 6.726154e-03

Joint ci ratio: 5.993610e-02	ci left: 6.246340e-03	ci right 6.633769e-03	k: 4249	n:660000
Cons ci ratio: 1.845166e-03	ci left: 8.716170e-01	ci right 8.732282e-01	k: 575800	n:660000
KS ci ratio: 1.079504e-01	ci left: 1.886277e-03	ci right 2.102980e-03	k: 1315	n:660000
CSH2   660000 perm   299 sec   (2210 perm/sec)   p_kst 1.992424e-03   p_cons 8.724242e-01   p_joint 6.437879e-03

Joint ci ratio: 5.951764e-02	ci left: 6.241325e-03	ci right 6.625648e-03	k: 4309	n:670000
Cons ci ratio: 1.831249e-03	ci left: 8.716347e-01	ci right 8.732338e-01	k: 584532	n:670000
KS ci ratio: 1.075028e-01	ci left: 1.874099e-03	ci right 2.088453e-03	k: 1326	n:670000
CSH2   670000 perm   306 sec   (2190 perm/sec)   p_kst 1.979104e-03   p_cons 8.724358e-01   p_joint 6.431343e-03

Joint ci ratio: 5.906024e-02	ci left: 6.246610e-03	ci right 6.628201e-03	k: 4376	n:680000
Cons ci ratio: 1.817907e-03	ci left: 8.716194e-01	ci right 8.732068e-01	k: 593242	n:680000
KS ci ratio: 1.066620e-01	ci left: 1.876594e-03	ci right 2.089449e-03	k: 1347	n:680000
CSH2   680000 perm   313 sec   (2171 perm/sec)   p_kst 1.980882e-03   p_cons 8.724147e-01   p_joint 6.435294e-03

Joint ci ratio: 5.863980e-02	ci left: 6.246040e-03	ci right 6.624788e-03	k: 4439	n:690000
Cons ci ratio: 1.804476e-03	ci left: 8.716512e-01	ci right 8.732269e-01	k: 601984	n:690000
KS ci ratio: 1.058020e-01	ci left: 1.880434e-03	ci right 2.091898e-03	k: 1369	n:690000
CSH2   690000 perm   321 sec   (2150 perm/sec)   p_kst 1.984058e-03   p_cons 8.724406e-01   p_joint 6.433333e-03

Joint ci ratio: 5.824122e-02	ci left: 6.242680e-03	ci right 6.618565e-03	k: 4500	n:700000
Cons ci ratio: 1.791660e-03	ci left: 8.716419e-01	ci right 8.732064e-01	k: 610698	n:700000
KS ci ratio: 1.051139e-01	ci left: 1.878607e-03	ci right 2.088406e-03	k: 1387	n:700000
CSH2   700000 perm   328 sec   (2131 perm/sec)   p_kst 1.981429e-03   p_cons 8.724257e-01   p_joint 6.428571e-03

Joint ci ratio: 5.779332e-02	ci left: 6.251917e-03	ci right 6.625366e-03	k: 4570	n:710000
Cons ci ratio: 1.779057e-03	ci left: 8.716401e-01	ci right 8.731935e-01	k: 619417	n:710000
KS ci ratio: 1.044762e-01	ci left: 1.875463e-03	ci right 2.083563e-03	k: 1404	n:710000
CSH2   710000 perm   336 sec   (2113 perm/sec)   p_kst 1.977465e-03   p_cons 8.724183e-01   p_joint 6.436620e-03

Joint ci ratio: 5.740541e-02	ci left: 6.249956e-03	ci right 6.620699e-03	k: 4632	n:720000
Cons ci ratio: 1.766507e-03	ci left: 8.716647e-01	ci right 8.732073e-01	k: 628155	n:720000
KS ci ratio: 1.035223e-01	ci left: 1.884587e-03	ci right 2.091674e-03	k: 1430	n:720000
CSH2   720000 perm   344 sec   (2094 perm/sec)   p_kst 1.986111e-03   p_cons 8.724375e-01   p_joint 6.433333e-03

Joint ci ratio: 5.704355e-02	ci left: 6.244005e-03	ci right 6.611983e-03	k: 4691	n:730000
Cons ci ratio: 1.754586e-03	ci left: 8.716421e-01	ci right 8.731741e-01	k: 636859	n:730000
KS ci ratio: 1.027354e-01	ci left: 1.888131e-03	ci right 2.093935e-03	k: 1452	n:730000
CSH2   730000 perm   352 sec   (2076 perm/sec)   p_kst 1.989041e-03   p_cons 8.724096e-01   p_joint 6.426027e-03

Joint ci ratio: 5.673053e-02	ci left: 6.228896e-03	ci right 6.593903e-03	k: 4743	n:740000
Cons ci ratio: 1.742839e-03	ci left: 8.716282e-01	ci right 8.731500e-01	k: 645569	n:740000
KS ci ratio: 1.020356e-01	ci left: 1.888951e-03	ci right 2.093358e-03	k: 1472	n:740000
CSH2   740000 perm   360 sec   (2058 perm/sec)   p_kst 1.989189e-03   p_cons 8.723905e-01   p_joint 6.409459e-03

Joint ci ratio: 5.632223e-02	ci left: 6.236544e-03	ci right 6.599284e-03	k: 4812	n:750000
Cons ci ratio: 1.731688e-03	ci left: 8.715679e-01	ci right 8.730798e-01	k: 654244	n:750000
KS ci ratio: 1.014520e-01	ci left: 1.885854e-03	ci right 2.088690e-03	k: 1489	n:750000
CSH2   750000 perm   368 sec   (2040 perm/sec)   p_kst 1.985333e-03   p_cons 8.723253e-01   p_joint 6.416000e-03

Joint ci ratio: 5.602087e-02	ci left: 6.221943e-03	ci right 6.581835e-03	k: 4864	n:760000
Cons ci ratio: 1.719874e-03	ci left: 8.716228e-01	ci right 8.731244e-01	k: 663005	n:760000
KS ci ratio: 1.009119e-01	ci left: 1.881560e-03	ci right 2.082792e-03	k: 1505	n:760000
CSH2   760000 perm   376 sec   (2022 perm/sec)   p_kst 1.980263e-03   p_cons 8.723750e-01   p_joint 6.400000e-03

Joint ci ratio: 5.565031e-02	ci left: 6.224376e-03	ci right 6.581950e-03	k: 4929	n:770000
Cons ci ratio: 1.708507e-03	ci left: 8.716488e-01	ci right 8.731406e-01	k: 671745	n:770000
KS ci ratio: 1.003474e-01	ci left: 1.878647e-03	ci right 2.078377e-03	k: 1522	n:770000
CSH2   770000 perm   384 sec   (2006 perm/sec)   p_kst 1.976623e-03   p_cons 8.723961e-01   p_joint 6.401299e-03

Joint ci ratio: 5.524805e-02	ci left: 6.235605e-03	ci right 6.591152e-03	k: 5001	n:780000
Cons ci ratio: 1.698047e-03	ci left: 8.715843e-01	ci right 8.730668e-01	k: 680415	n:780000
KS ci ratio: 9.956565e-02	ci left: 1.884562e-03	ci right 2.083269e-03	k: 1546	n:780000
CSH2   780000 perm   392 sec   (1989 perm/sec)   p_kst 1.982051e-03   p_cons 8.723269e-01   p_joint 6.411538e-03

Outputting figure to mutsig2_images.part000000000044/CSH2.3_722_780000_0.0019821_0.87233_0.0064115.png
                gene_name: CSH2
               theta_stop: 0.100 
                    nperm: 780000 
                     p_ks: 0.0020 
        ci_ks_bounds_left: 0.0019 
       ci_ks_bounds_right: 0.0021 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.0064 
     ci_joint_bounds_left: 0.0062 
    ci_joint_bounds_right: 0.0066 

Current progress: 40 percent done.
CSNK2A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.320333e-01	ci left: 7.562816e-02	ci right 8.641740e-02	k: 809	n:10000
Cons ci ratio: 6.211914e-02	ci left: 2.758690e-01	ci right 2.936566e-01	k: 2847	n:10000
KS ci ratio: 1.816359e-01	ci left: 4.044604e-02	ci right 4.862195e-02	k: 444	n:10000
CSNK2A1   10000 perm   2 sec   (6524 perm/sec)   p_kst 4.440000e-02   p_cons 2.847000e-01   p_joint 8.090000e-02

Joint ci ratio: 1.049967e-01	ci left: 6.171935e-02	ci right 6.860773e-02	k: 1302	n:20000
Cons ci ratio: 4.402232e-02	ci left: 2.776082e-01	ci right 2.901547e-01	k: 5677	n:20000
KS ci ratio: 1.325438e-01	ci left: 3.911656e-02	ci right 4.471761e-02	k: 837	n:20000
CSNK2A1   20000 perm   4 sec   (5653 perm/sec)   p_kst 4.185000e-02   p_cons 2.838500e-01   p_joint 6.510000e-02

Joint ci ratio: 9.669752e-02	ci left: 4.941668e-02	ci right 5.447054e-02	k: 1557	n:30000
Cons ci ratio: 3.599725e-02	ci left: 2.781724e-01	ci right 2.884029e-01	k: 8498	n:30000
KS ci ratio: 1.122438e-01	ci left: 3.686981e-02	ci right 4.128669e-02	k: 1171	n:30000
CSNK2A1   30000 perm   6 sec   (5367 perm/sec)   p_kst 3.903333e-02   p_cons 2.832667e-01   p_joint 5.190000e-02

Joint ci ratio: 8.472240e-02	ci left: 4.864374e-02	ci right 5.297177e-02	k: 2031	n:40000
Cons ci ratio: 3.111135e-02	ci left: 2.796837e-01	ci right 2.885476e-01	k: 11364	n:40000
KS ci ratio: 9.752065e-02	ci left: 3.692852e-02	ci right 4.073880e-02	k: 1552	n:40000
CSNK2A1   40000 perm   8 sec   (5159 perm/sec)   p_kst 3.880000e-02   p_cons 2.841000e-01   p_joint 5.077500e-02

Outputting figure to mutsig2_images.part000000000044/CSNK2A1.3_1224_40000_0.0388_0.2841_0.050775.png
                gene_name: CSNK2A1
               theta_stop: 0.098 
                    nperm: 40000 
                     p_ks: 0.039 
        ci_ks_bounds_left: 0.037 
       ci_ks_bounds_right: 0.041 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.051 
     ci_joint_bounds_left: 0.049 
    ci_joint_bounds_right: 0.053 

Current progress: 43 percent done.
CSPG4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.499942e-02	ci left: 2.579524e-01	ci right 2.753837e-01	k: 2666	n:10000
Cons ci ratio: 1.022656e-01	ci left: 1.215110e-01	ci right 1.347065e-01	k: 1280	n:10000
KS ci ratio: 4.238824e-02	ci left: 4.510928e-01	ci right 4.707300e-01	k: 4609	n:10000
CSPG4   10000 perm   3 sec   (3718 perm/sec)   p_kst 4.609000e-01   p_cons 1.280000e-01   p_joint 2.666000e-01

Joint ci ratio: 4.431646e-02	ci left: 2.749267e-01	ci right 2.874370e-01	k: 5623	n:20000
Cons ci ratio: 7.231397e-02	ci left: 1.234484e-01	ci right 1.327600e-01	k: 2561	n:20000
KS ci ratio: 2.883370e-02	ci left: 4.733042e-01	ci right 4.872016e-01	k: 9605	n:20000
CSPG4   20000 perm   6 sec   (3355 perm/sec)   p_kst 4.802500e-01   p_cons 1.280500e-01   p_joint 2.811500e-01

Outputting figure to mutsig2_images.part000000000044/CSPG4.3_7009_20000_0.48025_0.12805_0.28115.png
                gene_name: CSPG4
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 45 percent done.
CSRNP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.202125e-02	ci left: 9.084365e-01	ci right 9.195210e-01	k: 9141	n:10000
KS ci ratio: 3.999384e-02	ci left: 4.800563e-01	ci right 4.997496e-01	k: 4899	n:10000
CSRNP1   10000 perm   2 sec   (5885 perm/sec)   p_kst 4.899000e-01   p_cons 9.141000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000044/CSRNP1.3_1786_10000_0.4899_0.9141_1.png
                gene_name: CSRNP1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 47 percent done.
CST11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.915495e-02	ci left: 4.906512e-01	ci right 5.103485e-01	k: 5005	n:10000
Cons ci ratio: 8.636922e-02	ci left: 1.633724e-01	ci right 1.782199e-01	k: 1707	n:10000
KS ci ratio: 2.474170e-02	ci left: 7.061416e-01	ci right 7.239330e-01	k: 7151	n:10000
CST11   10000 perm   1 sec   (7013 perm/sec)   p_kst 7.151000e-01   p_cons 1.707000e-01   p_joint 5.005000e-01

Outputting figure to mutsig2_images.part000000000044/CST11.3_429_10000_0.7151_0.1707_0.5005.png
                gene_name: CST11
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 49 percent done.
CST8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.010399e-02	ci left: 1.854036e-01	ci right 2.009755e-01	k: 1931	n:10000
Cons ci ratio: 6.847959e-02	ci left: 2.382755e-01	ci right 2.552722e-01	k: 2467	n:10000
KS ci ratio: 8.757768e-02	ci left: 1.595411e-01	ci right 1.742535e-01	k: 1668	n:10000
CST8   10000 perm   1 sec   (6698 perm/sec)   p_kst 1.668000e-01   p_cons 2.467000e-01   p_joint 1.931000e-01

Outputting figure to mutsig2_images.part000000000044/CST8.3_441_10000_0.1668_0.2467_0.1931.png
                gene_name: CST8
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 51 percent done.
CSTF2T
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.772196e-02	ci left: 1.317858e-01	ci right 1.454255e-01	k: 1385	n:10000
Cons ci ratio: 9.191022e-02	ci left: 1.467809e-01	ci right 1.610214e-01	k: 1538	n:10000
KS ci ratio: 9.977908e-02	ci left: 1.269892e-01	ci right 1.404250e-01	k: 1336	n:10000
CSTF2T   10000 perm   2 sec   (5996 perm/sec)   p_kst 1.336000e-01   p_cons 1.538000e-01   p_joint 1.385000e-01

Outputting figure to mutsig2_images.part000000000044/CSTF2T.3_1855_10000_0.1336_0.1538_0.1385.png
                gene_name: CSTF2T
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.15 

Current progress: 53 percent done.
CTAG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.002490e-01	ci left: 7.602648e-03	ci right 1.149110e-02	k: 94	n:10000
Cons ci ratio: 5.706448e-02	ci left: 3.113568e-01	ci right 3.297478e-01	k: 3205	n:10000
KS ci ratio: 1.481028e+00	ci left: 2.202202e-04	ci right 1.305486e-03	k: 6	n:10000
CTAG2   10000 perm   1 sec   (6755 perm/sec)   p_kst 6.000000e-04   p_cons 3.205000e-01   p_joint 9.400000e-03

Joint ci ratio: 4.346619e-01	ci left: 3.172987e-03	ci right 4.975909e-03	k: 80	n:20000
Cons ci ratio: 4.309353e-02	ci left: 2.863003e-01	ci right 2.989601e-01	k: 5852	n:20000
KS ci ratio: 1.047271e+00	ci left: 3.461416e-04	ci right 1.111263e-03	k: 13	n:20000
CTAG2   20000 perm   3 sec   (5934 perm/sec)   p_kst 6.500000e-04   p_cons 2.926000e-01   p_joint 4.000000e-03

Joint ci ratio: 2.267148e-01	ci left: 8.747748e-03	ci right 1.101535e-02	k: 295	n:30000
Cons ci ratio: 3.510803e-02	ci left: 2.883838e-01	ci right 2.987228e-01	k: 8806	n:30000
KS ci ratio: 7.836602e-01	ci left: 5.126402e-04	ci right 1.190104e-03	k: 24	n:30000
CTAG2   30000 perm   5 sec   (5589 perm/sec)   p_kst 8.000000e-04   p_cons 2.935333e-01   p_joint 9.833333e-03

Joint ci ratio: 2.710921e-01	ci left: 4.495471e-03	ci right 5.927807e-03	k: 207	n:40000
Cons ci ratio: 3.041852e-02	ci left: 2.888908e-01	ci right 2.978392e-01	k: 11734	n:40000
KS ci ratio: 6.820944e-01	ci left: 5.472618e-04	ci right 1.129175e-03	k: 32	n:40000
CTAG2   40000 perm   7 sec   (5364 perm/sec)   p_kst 8.000000e-04   p_cons 2.933500e-01   p_joint 5.175000e-03

Joint ci ratio: 2.661428e-01	ci left: 3.745401e-03	ci right 4.913300e-03	k: 215	n:50000
Cons ci ratio: 2.613116e-02	ci left: 3.063060e-01	ci right 3.144361e-01	k: 15518	n:50000
KS ci ratio: 5.975313e-01	ci left: 6.054631e-04	ci right 1.135268e-03	k: 42	n:50000
CTAG2   50000 perm   10 sec   (5189 perm/sec)   p_kst 8.400000e-04   p_cons 3.103600e-01   p_joint 4.300000e-03

Joint ci ratio: 2.824463e-01	ci left: 2.748442e-03	ci right 3.667318e-03	k: 191	n:60000
Cons ci ratio: 2.383471e-02	ci left: 3.070146e-01	ci right 3.144371e-01	k: 18643	n:60000
KS ci ratio: 5.541361e-01	ci left: 6.042337e-04	ci right 1.079535e-03	k: 49	n:60000
CTAG2   60000 perm   12 sec   (5037 perm/sec)   p_kst 8.166667e-04   p_cons 3.107167e-01   p_joint 3.183333e-03

Joint ci ratio: 2.918016e-01	ci left: 2.196625e-03	ci right 2.959826e-03	k: 179	n:70000
Cons ci ratio: 2.207941e-02	ci left: 3.070446e-01	ci right 3.139139e-01	k: 21733	n:70000
KS ci ratio: 5.145043e-01	ci left: 6.167886e-04	ci right 1.054875e-03	k: 57	n:70000
CTAG2   70000 perm   14 sec   (4916 perm/sec)   p_kst 8.142857e-04   p_cons 3.104714e-01   p_joint 2.557143e-03

Joint ci ratio: 3.076704e-01	ci left: 1.713884e-03	ci right 2.348099e-03	k: 161	n:80000
Cons ci ratio: 2.044653e-02	ci left: 3.115822e-01	ci right 3.180312e-01	k: 25184	n:80000
KS ci ratio: 4.585891e-01	ci left: 7.042591e-04	ci right 1.133269e-03	k: 72	n:80000
CTAG2   80000 perm   17 sec   (4809 perm/sec)   p_kst 9.000000e-04   p_cons 3.148000e-01   p_joint 2.012500e-03

Joint ci ratio: 1.973046e-01	ci left: 3.935810e-03	ci right 4.807721e-03	k: 392	n:90000
Cons ci ratio: 1.927326e-02	ci left: 3.118548e-01	ci right 3.179349e-01	k: 28340	n:90000
KS ci ratio: 4.249805e-01	ci left: 7.445294e-04	ci right 1.155402e-03	k: 84	n:90000
CTAG2   90000 perm   19 sec   (4679 perm/sec)   p_kst 9.333333e-04   p_cons 3.148889e-01   p_joint 4.355556e-03

Joint ci ratio: 1.986204e-01	ci left: 3.494627e-03	ci right 4.274583e-03	k: 387	n:100000
Cons ci ratio: 1.828719e-02	ci left: 3.119418e-01	ci right 3.177089e-01	k: 31482	n:100000
KS ci ratio: 4.153321e-01	ci left: 7.058437e-04	ci right 1.084074e-03	k: 88	n:100000
CTAG2   100000 perm   22 sec   (4569 perm/sec)   p_kst 8.800000e-04   p_cons 3.148200e-01   p_joint 3.870000e-03

Joint ci ratio: 1.427446e-01	ci left: 6.322843e-03	ci right 7.303432e-03	k: 748	n:110000
Cons ci ratio: 1.740618e-02	ci left: 3.128176e-01	ci right 3.183194e-01	k: 34712	n:110000
KS ci ratio: 3.978384e-01	ci left: 7.069673e-04	ci right 1.065647e-03	k: 96	n:110000
CTAG2   110000 perm   25 sec   (4448 perm/sec)   p_kst 8.727273e-04   p_cons 3.155636e-01   p_joint 6.800000e-03

Joint ci ratio: 1.580514e-01	ci left: 4.696801e-03	ci right 5.510732e-03	k: 611	n:120000
Cons ci ratio: 1.667021e-02	ci left: 3.128045e-01	ci right 3.180711e-01	k: 37852	n:120000
KS ci ratio: 3.653652e-01	ci left: 7.836948e-04	ci right 1.141131e-03	k: 114	n:120000
CTAG2   120000 perm   27 sec   (4365 perm/sec)   p_kst 9.500000e-04   p_cons 3.154333e-01   p_joint 5.091667e-03

Joint ci ratio: 1.660385e-01	ci left: 3.914683e-03	ci right 4.630784e-03	k: 554	n:130000
Cons ci ratio: 1.603233e-02	ci left: 3.124752e-01	ci right 3.175330e-01	k: 40950	n:130000
KS ci ratio: 3.561964e-01	ci left: 7.653799e-04	ci right 1.103674e-03	k: 120	n:130000
CTAG2   130000 perm   30 sec   (4285 perm/sec)   p_kst 9.230769e-04   p_cons 3.150000e-01   p_joint 4.261538e-03

Joint ci ratio: 1.606333e-01	ci left: 3.895395e-03	ci right 4.582531e-03	k: 592	n:140000
Cons ci ratio: 1.544762e-02	ci left: 3.126098e-01	ci right 3.174836e-01	k: 44106	n:140000
KS ci ratio: 3.463227e-01	ci left: 7.562985e-04	ci right 1.079235e-03	k: 127	n:140000
CTAG2   140000 perm   33 sec   (4200 perm/sec)   p_kst 9.071429e-04   p_cons 3.150429e-01   p_joint 4.228571e-03

Joint ci ratio: 1.272505e-01	ci left: 5.886460e-03	ci right 6.692803e-03	k: 942	n:150000
Cons ci ratio: 1.491472e-02	ci left: 3.129556e-01	ci right 3.176649e-01	k: 47296	n:150000
KS ci ratio: 3.335379e-01	ci left: 7.668572e-04	ci right 1.079620e-03	k: 137	n:150000
CTAG2   150000 perm   36 sec   (4130 perm/sec)   p_kst 9.133333e-04   p_cons 3.153067e-01   p_joint 6.280000e-03

Joint ci ratio: 1.297916e-01	ci left: 5.300685e-03	ci right 6.042400e-03	k: 906	n:160000
Cons ci ratio: 1.443717e-02	ci left: 3.131483e-01	ci right 3.177084e-01	k: 50468	n:160000
KS ci ratio: 3.242724e-01	ci left: 7.648008e-04	ci right 1.066257e-03	k: 145	n:160000
CTAG2   160000 perm   39 sec   (4062 perm/sec)   p_kst 9.062500e-04   p_cons 3.154250e-01   p_joint 5.662500e-03

Joint ci ratio: 1.306854e-01	ci left: 4.920528e-03	ci right 5.614155e-03	k: 894	n:170000
Cons ci ratio: 1.401285e-02	ci left: 3.130093e-01	ci right 3.174323e-01	k: 53587	n:170000
KS ci ratio: 3.188624e-01	ci left: 7.468494e-04	ci right 1.035316e-03	k: 150	n:170000
CTAG2   170000 perm   43 sec   (3996 perm/sec)   p_kst 8.823529e-04   p_cons 3.152176e-01   p_joint 5.258824e-03

Joint ci ratio: 1.390722e-01	ci left: 4.088741e-03	ci right 4.705167e-03	k: 790	n:180000
Cons ci ratio: 1.361879e-02	ci left: 3.130484e-01	ci right 3.173465e-01	k: 56735	n:180000
KS ci ratio: 3.088002e-01	ci left: 7.565397e-04	ci right 1.037714e-03	k: 160	n:180000
CTAG2   180000 perm   46 sec   (3928 perm/sec)   p_kst 8.888889e-04   p_cons 3.151944e-01   p_joint 4.388889e-03

Joint ci ratio: 1.407051e-01	ci left: 3.782080e-03	ci right 4.359528e-03	k: 772	n:190000
Cons ci ratio: 1.325103e-02	ci left: 3.132530e-01	ci right 3.174368e-01	k: 59915	n:190000
KS ci ratio: 2.996342e-01	ci left: 7.653376e-04	ci right 1.039732e-03	k: 170	n:190000
CTAG2   190000 perm   49 sec   (3866 perm/sec)   p_kst 8.947368e-04   p_cons 3.153421e-01   p_joint 4.063158e-03

Joint ci ratio: 1.394574e-01	ci left: 3.660507e-03	ci right 4.214024e-03	k: 786	n:200000
Cons ci ratio: 1.291663e-02	ci left: 3.132689e-01	ci right 3.173465e-01	k: 63061	n:200000
KS ci ratio: 2.936849e-01	ci left: 7.594661e-04	ci right 1.025343e-03	k: 177	n:200000
CTAG2   200000 perm   53 sec   (3805 perm/sec)   p_kst 8.850000e-04   p_cons 3.153050e-01   p_joint 3.930000e-03

Joint ci ratio: 1.140375e-01	ci left: 5.276042e-03	ci right 5.918673e-03	k: 1174	n:210000
Cons ci ratio: 1.260771e-02	ci left: 3.132369e-01	ci right 3.172158e-01	k: 66197	n:210000
KS ci ratio: 2.880765e-01	ci left: 7.542023e-04	ci right 1.012277e-03	k: 184	n:210000
CTAG2   210000 perm   56 sec   (3748 perm/sec)   p_kst 8.761905e-04   p_cons 3.152238e-01   p_joint 5.590476e-03

Joint ci ratio: 1.188778e-01	ci left: 4.625710e-03	ci right 5.214723e-03	k: 1081	n:220000
Cons ci ratio: 1.230453e-02	ci left: 3.137489e-01	ci right 3.176378e-01	k: 69452	n:220000
KS ci ratio: 2.827775e-01	ci left: 7.494609e-04	ci right 1.000354e-03	k: 191	n:220000
CTAG2   220000 perm   60 sec   (3692 perm/sec)   p_kst 8.681818e-04   p_cons 3.156909e-01   p_joint 4.913636e-03

Joint ci ratio: 1.171624e-01	ci left: 4.559606e-03	ci right 5.131243e-03	k: 1113	n:230000
Cons ci ratio: 1.203758e-02	ci left: 3.136661e-01	ci right 3.174690e-01	k: 72580	n:230000
KS ci ratio: 2.791682e-01	ci left: 7.370825e-04	ci right 9.801284e-04	k: 196	n:230000
CTAG2   230000 perm   63 sec   (3636 perm/sec)   p_kst 8.521739e-04   p_cons 3.155652e-01   p_joint 4.839130e-03

Joint ci ratio: 1.167016e-01	ci left: 4.406005e-03	ci right 4.956062e-03	k: 1122	n:240000
Cons ci ratio: 1.177319e-02	ci left: 3.141069e-01	ci right 3.178309e-01	k: 75832	n:240000
KS ci ratio: 2.770698e-01	ci left: 7.179980e-04	ci right 9.526609e-04	k: 199	n:240000
CTAG2   240000 perm   67 sec   (3582 perm/sec)   p_kst 8.291667e-04   p_cons 3.159667e-01   p_joint 4.675000e-03

Joint ci ratio: 1.184195e-01	ci left: 4.105491e-03	ci right 4.626103e-03	k: 1090	n:250000
Cons ci ratio: 1.153070e-02	ci left: 3.143175e-01	ci right 3.179668e-01	k: 79035	n:250000
KS ci ratio: 2.703915e-01	ci left: 7.265337e-04	ci right 9.572921e-04	k: 209	n:250000
CTAG2   250000 perm   71 sec   (3529 perm/sec)   p_kst 8.360000e-04   p_cons 3.161400e-01   p_joint 4.360000e-03

Joint ci ratio: 1.164626e-01	ci left: 4.085712e-03	ci right 4.594665e-03	k: 1127	n:260000
Cons ci ratio: 1.131025e-02	ci left: 3.142208e-01	ci right 3.177987e-01	k: 82162	n:260000
KS ci ratio: 2.647770e-01	ci left: 7.308839e-04	ci right 9.574048e-04	k: 218	n:260000
CTAG2   260000 perm   75 sec   (3476 perm/sec)   p_kst 8.384615e-04   p_cons 3.160077e-01   p_joint 4.334615e-03

Joint ci ratio: 1.160082e-01	ci left: 3.966740e-03	ci right 4.458811e-03	k: 1136	n:270000
Cons ci ratio: 1.110426e-02	ci left: 3.140431e-01	ci right 3.175534e-01	k: 85265	n:270000
KS ci ratio: 2.572495e-01	ci left: 7.488137e-04	ci right 9.732348e-04	k: 231	n:270000
CTAG2   270000 perm   79 sec   (3426 perm/sec)   p_kst 8.555556e-04   p_cons 3.157963e-01   p_joint 4.207407e-03

Joint ci ratio: 1.174252e-01	ci left: 3.731430e-03	ci right 4.200357e-03	k: 1109	n:280000
Cons ci ratio: 1.090390e-02	ci left: 3.140855e-01	ci right 3.175326e-01	k: 88426	n:280000
KS ci ratio: 2.539874e-01	ci left: 7.421258e-04	ci right 9.612754e-04	k: 237	n:280000
CTAG2   280000 perm   83 sec   (3380 perm/sec)   p_kst 8.464286e-04   p_cons 3.158071e-01   p_joint 3.960714e-03

Joint ci ratio: 1.186739e-01	ci left: 3.525770e-03	ci right 3.973893e-03	k: 1086	n:290000
Cons ci ratio: 1.071947e-02	ci left: 3.139052e-01	ci right 3.172916e-01	k: 91523	n:290000
KS ci ratio: 2.513623e-01	ci left: 7.326844e-04	ci right 9.464596e-04	k: 242	n:290000
CTAG2   290000 perm   87 sec   (3332 perm/sec)   p_kst 8.344828e-04   p_cons 3.155966e-01   p_joint 3.744828e-03

Joint ci ratio: 1.092903e-01	ci left: 4.036559e-03	ci right 4.506430e-03	k: 1280	n:300000
Cons ci ratio: 1.053475e-02	ci left: 3.141201e-01	ci right 3.174501e-01	k: 94735	n:300000
KS ci ratio: 2.483164e-01	ci left: 7.270092e-04	ci right 9.361610e-04	k: 248	n:300000
CTAG2   300000 perm   91 sec   (3288 perm/sec)   p_kst 8.266667e-04   p_cons 3.157833e-01   p_joint 4.266667e-03

Joint ci ratio: 1.074601e-01	ci left: 4.044437e-03	ci right 4.506841e-03	k: 1324	n:310000
Cons ci ratio: 1.036073e-02	ci left: 3.142604e-01	ci right 3.175365e-01	k: 97928	n:310000
KS ci ratio: 2.430057e-01	ci left: 7.368575e-04	ci right 9.436254e-04	k: 259	n:310000
CTAG2   310000 perm   96 sec   (3242 perm/sec)   p_kst 8.354839e-04   p_cons 3.158968e-01   p_joint 4.270968e-03

Joint ci ratio: 1.097792e-01	ci left: 3.750811e-03	ci right 4.189497e-03	k: 1269	n:320000
Cons ci ratio: 1.019822e-02	ci left: 3.142582e-01	ci right 3.174826e-01	k: 101078	n:320000
KS ci ratio: 2.367141e-01	ci left: 7.549527e-04	ci right 9.605100e-04	k: 273	n:320000
CTAG2   320000 perm   100 sec   (3200 perm/sec)   p_kst 8.531250e-04   p_cons 3.158687e-01   p_joint 3.965625e-03

Joint ci ratio: 1.083812e-01	ci left: 3.734420e-03	ci right 4.165272e-03	k: 1302	n:330000
Cons ci ratio: 1.004172e-02	ci left: 3.143171e-01	ci right 3.174922e-01	k: 104248	n:330000
KS ci ratio: 2.333325e-01	ci left: 7.548904e-04	ci right 9.570709e-04	k: 281	n:330000
CTAG2   330000 perm   104 sec   (3160 perm/sec)   p_kst 8.515152e-04   p_cons 3.159030e-01   p_joint 3.945455e-03

Joint ci ratio: 1.078077e-01	ci left: 3.664640e-03	ci right 4.085062e-03	k: 1316	n:340000
Cons ci ratio: 9.893417e-03	ci left: 3.143199e-01	ci right 3.174479e-01	k: 107400	n:340000
KS ci ratio: 2.300918e-01	ci left: 7.548514e-04	ci right 9.538146e-04	k: 289	n:340000
CTAG2   340000 perm   109 sec   (3118 perm/sec)   p_kst 8.500000e-04   p_cons 3.158824e-01   p_joint 3.870588e-03

Joint ci ratio: 1.078137e-01	ci left: 3.559926e-03	ci right 3.968358e-03	k: 1316	n:350000
Cons ci ratio: 9.749180e-03	ci left: 3.144256e-01	ci right 3.175088e-01	k: 110588	n:350000
KS ci ratio: 2.277487e-01	ci left: 7.494438e-04	ci right 9.446874e-04	k: 295	n:350000
CTAG2   350000 perm   114 sec   (3077 perm/sec)   p_kst 8.428571e-04   p_cons 3.159657e-01   p_joint 3.760000e-03

Joint ci ratio: 1.081910e-01	ci left: 3.436702e-03	ci right 3.832465e-03	k: 1307	n:360000
Cons ci ratio: 9.612802e-03	ci left: 3.144481e-01	ci right 3.174882e-01	k: 113748	n:360000
KS ci ratio: 2.239959e-01	ci left: 7.548324e-04	ci right 9.477925e-04	k: 305	n:360000
CTAG2   360000 perm   118 sec   (3040 perm/sec)   p_kst 8.472222e-04   p_cons 3.159667e-01   p_joint 3.630556e-03

Joint ci ratio: 1.074162e-01	ci left: 3.393781e-03	ci right 3.781625e-03	k: 1326	n:370000
Cons ci ratio: 9.483414e-03	ci left: 3.144049e-01	ci right 3.174034e-01	k: 116884	n:370000
KS ci ratio: 2.225475e-01	ci left: 7.446373e-04	ci right 9.335916e-04	k: 309	n:370000
CTAG2   370000 perm   123 sec   (3001 perm/sec)   p_kst 8.351351e-04   p_cons 3.159027e-01   p_joint 3.583784e-03

Joint ci ratio: 1.150187e-01	ci left: 2.872046e-03	ci right 3.225073e-03	k: 1157	n:380000
Cons ci ratio: 9.355867e-03	ci left: 3.145140e-01	ci right 3.174730e-01	k: 120077	n:380000
KS ci ratio: 2.187003e-01	ci left: 7.523897e-04	ci right 9.395673e-04	k: 320	n:380000
CTAG2   380000 perm   128 sec   (2963 perm/sec)   p_kst 8.421053e-04   p_cons 3.159921e-01   p_joint 3.044737e-03

Joint ci ratio: 1.137013e-01	ci left: 2.865654e-03	ci right 3.213590e-03	k: 1184	n:390000
Cons ci ratio: 9.233495e-03	ci left: 3.146101e-01	ci right 3.175311e-01	k: 123267	n:390000
KS ci ratio: 2.180240e-01	ci left: 7.379448e-04	ci right 9.208850e-04	k: 322	n:390000
CTAG2   390000 perm   133 sec   (2926 perm/sec)   p_kst 8.256410e-04   p_cons 3.160692e-01   p_joint 3.035897e-03

Joint ci ratio: 1.122889e-01	ci left: 2.866893e-03	ci right 3.210369e-03	k: 1214	n:400000
Cons ci ratio: 9.114695e-03	ci left: 3.147541e-01	ci right 3.176386e-01	k: 126478	n:400000
KS ci ratio: 2.153733e-01	ci left: 7.384108e-04	ci right 9.189466e-04	k: 330	n:400000
CTAG2   400000 perm   138 sec   (2889 perm/sec)   p_kst 8.250000e-04   p_cons 3.161950e-01   p_joint 3.035000e-03

Joint ci ratio: 9.572845e-02	ci left: 3.878126e-03	ci right 4.270397e-03	k: 1669	n:410000
Cons ci ratio: 9.005647e-03	ci left: 3.146379e-01	ci right 3.174866e-01	k: 129585	n:410000
KS ci ratio: 2.115713e-01	ci left: 7.481048e-04	ci right 9.273634e-04	k: 342	n:410000
CTAG2   410000 perm   144 sec   (2852 perm/sec)   p_kst 8.341463e-04   p_cons 3.160610e-01   p_joint 4.070732e-03

Joint ci ratio: 9.438086e-02	ci left: 3.897361e-03	ci right 4.285721e-03	k: 1717	n:420000
Cons ci ratio: 8.899341e-03	ci left: 3.145798e-01	ci right 3.173942e-01	k: 132714	n:420000
KS ci ratio: 2.091464e-01	ci left: 7.483371e-04	ci right 9.253329e-04	k: 350	n:420000
CTAG2   420000 perm   149 sec   (2817 perm/sec)   p_kst 8.333333e-04   p_cons 3.159857e-01   p_joint 4.088095e-03

Joint ci ratio: 1.172423e-01	ci left: 2.440960e-03	ci right 2.747199e-03	k: 1114	n:430000
Cons ci ratio: 8.793969e-03	ci left: 3.146593e-01	ci right 3.174409e-01	k: 135901	n:430000
KS ci ratio: 2.229206e-01	ci left: 6.385345e-04	ci right 8.008735e-04	k: 308	n:430000
CTAG2   430000 perm   154 sec   (2784 perm/sec)   p_kst 7.162791e-04   p_cons 3.160488e-01   p_joint 2.590698e-03

Joint ci ratio: 1.158988e-01	ci left: 2.442852e-03	ci right 2.745576e-03	k: 1140	n:440000
Cons ci ratio: 8.694355e-03	ci left: 3.146309e-01	ci right 3.173806e-01	k: 139042	n:440000
KS ci ratio: 2.200896e-01	ci left: 6.411956e-04	ci right 8.018606e-04	k: 316	n:440000
CTAG2   440000 perm   160 sec   (2753 perm/sec)   p_kst 7.181818e-04   p_cons 3.160045e-01   p_joint 2.590909e-03

Joint ci ratio: 1.164663e-01	ci left: 2.364826e-03	ci right 2.659415e-03	k: 1129	n:450000
Cons ci ratio: 8.596239e-03	ci left: 3.146950e-01	ci right 3.174140e-01	k: 142224	n:450000
KS ci ratio: 2.173637e-01	ci left: 6.437508e-04	ci right 8.027916e-04	k: 324	n:450000
CTAG2   450000 perm   165 sec   (2720 perm/sec)   p_kst 7.200000e-04   p_cons 3.160533e-01   p_joint 2.508889e-03

Joint ci ratio: 1.154498e-01	ci left: 2.355634e-03	ci right 2.646341e-03	k: 1149	n:460000
Cons ci ratio: 8.505690e-03	ci left: 3.145371e-01	ci right 3.172261e-01	k: 145305	n:460000
KS ci ratio: 2.157112e-01	ci left: 6.400362e-04	ci right 7.967979e-04	k: 329	n:460000
CTAG2   460000 perm   171 sec   (2689 perm/sec)   p_kst 7.152174e-04   p_cons 3.158804e-01   p_joint 2.497826e-03

Joint ci ratio: 1.155032e-01	ci left: 2.303444e-03	ci right 2.587851e-03	k: 1148	n:470000
Cons ci ratio: 8.411191e-03	ci left: 3.147326e-01	ci right 3.173931e-01	k: 148549	n:470000
KS ci ratio: 2.128282e-01	ci left: 6.445400e-04	ci right 8.000195e-04	k: 338	n:470000
CTAG2   470000 perm   177 sec   (2658 perm/sec)   p_kst 7.191489e-04   p_cons 3.160617e-01   p_joint 2.442553e-03

Joint ci ratio: 1.164755e-01	ci left: 2.217015e-03	ci right 2.493214e-03	k: 1129	n:480000
Cons ci ratio: 8.321815e-03	ci left: 3.148139e-01	ci right 3.174467e-01	k: 151742	n:480000
KS ci ratio: 2.109696e-01	ci left: 6.429487e-04	ci right 7.965149e-04	k: 344	n:480000
CTAG2   480000 perm   183 sec   (2627 perm/sec)   p_kst 7.166667e-04   p_cons 3.161292e-01   p_joint 2.352083e-03

Joint ci ratio: 1.082019e-01	ci left: 2.526846e-03	ci right 2.817860e-03	k: 1308	n:490000
Cons ci ratio: 8.234452e-03	ci left: 3.149328e-01	ci right 3.175388e-01	k: 154955	n:490000
KS ci ratio: 2.088614e-01	ci left: 6.433620e-04	ci right 7.952951e-04	k: 351	n:490000
CTAG2   490000 perm   189 sec   (2597 perm/sec)   p_kst 7.163265e-04   p_cons 3.162347e-01   p_joint 2.669388e-03

Joint ci ratio: 1.072237e-01	ci left: 2.523015e-03	ci right 2.810796e-03	k: 1332	n:500000
Cons ci ratio: 8.154119e-03	ci left: 3.148173e-01	ci right 3.173968e-01	k: 158053	n:500000
KS ci ratio: 2.073941e-01	ci left: 6.399735e-04	ci right 7.899098e-04	k: 356	n:500000
CTAG2   500000 perm   195 sec   (2569 perm/sec)   p_kst 7.120000e-04   p_cons 3.161060e-01   p_joint 2.664000e-03

Joint ci ratio: 1.068255e-01	ci left: 2.492625e-03	ci right 2.775817e-03	k: 1342	n:510000
Cons ci ratio: 8.072759e-03	ci left: 3.148847e-01	ci right 3.174389e-01	k: 161242	n:510000
KS ci ratio: 2.059573e-01	ci left: 6.367214e-04	ci right 7.847321e-04	k: 361	n:510000
CTAG2   510000 perm   201 sec   (2541 perm/sec)   p_kst 7.078431e-04   p_cons 3.161608e-01   p_joint 2.631373e-03

Joint ci ratio: 9.884549e-02	ci left: 2.866296e-03	ci right 3.166206e-03	k: 1567	n:520000
Cons ci ratio: 7.997093e-03	ci left: 3.147710e-01	ci right 3.173003e-01	k: 164338	n:520000
KS ci ratio: 2.045499e-01	ci left: 6.335979e-04	ci right 7.797502e-04	k: 366	n:520000
CTAG2   520000 perm   207 sec   (2513 perm/sec)   p_kst 7.038462e-04   p_cons 3.160346e-01   p_joint 3.013462e-03

Joint ci ratio: 9.968063e-02	ci left: 2.764369e-03	ci right 3.056201e-03	k: 1541	n:530000
Cons ci ratio: 7.922167e-03	ci left: 3.147352e-01	ci right 3.172404e-01	k: 167473	n:530000
KS ci ratio: 2.026267e-01	ci left: 6.341775e-04	ci right 7.789179e-04	k: 373	n:530000
CTAG2   530000 perm   213 sec   (2486 perm/sec)   p_kst 7.037736e-04   p_cons 3.159868e-01   p_joint 2.907547e-03

Joint ci ratio: 9.838020e-02	ci left: 2.787224e-03	ci right 3.077409e-03	k: 1582	n:540000
Cons ci ratio: 7.849139e-03	ci left: 3.147101e-01	ci right 3.171919e-01	k: 170613	n:540000
KS ci ratio: 2.004935e-01	ci left: 6.365007e-04	ci right 7.800549e-04	k: 381	n:540000
CTAG2   540000 perm   219 sec   (2461 perm/sec)   p_kst 7.055556e-04   p_cons 3.159500e-01   p_joint 2.929630e-03

Joint ci ratio: 9.724956e-02	ci left: 2.802176e-03	ci right 3.090373e-03	k: 1619	n:550000
Cons ci ratio: 7.777604e-03	ci left: 3.147133e-01	ci right 3.171723e-01	k: 173768	n:550000
KS ci ratio: 1.981723e-01	ci left: 6.404750e-04	ci right 7.830511e-04	k: 390	n:550000
CTAG2   550000 perm   226 sec   (2435 perm/sec)   p_kst 7.090909e-04   p_cons 3.159418e-01   p_joint 2.943636e-03

Joint ci ratio: 9.659652e-02	ci left: 2.790469e-03	ci right 3.075426e-03	k: 1641	n:560000
Cons ci ratio: 7.705888e-03	ci left: 3.148341e-01	ci right 3.172713e-01	k: 176989	n:560000
KS ci ratio: 1.961754e-01	ci left: 6.426185e-04	ci right 7.840581e-04	k: 398	n:560000
CTAG2   560000 perm   232 sec   (2409 perm/sec)   p_kst 7.107143e-04   p_cons 3.160518e-01   p_joint 2.930357e-03

Joint ci ratio: 9.563993e-02	ci left: 2.798017e-03	ci right 3.080757e-03	k: 1674	n:570000
Cons ci ratio: 7.636957e-03	ci left: 3.149035e-01	ci right 3.173194e-01	k: 180183	n:570000
KS ci ratio: 1.937618e-01	ci left: 6.480322e-04	ci right 7.887016e-04	k: 408	n:570000
CTAG2   570000 perm   239 sec   (2385 perm/sec)   p_kst 7.157895e-04   p_cons 3.161105e-01   p_joint 2.936842e-03

Joint ci ratio: 9.663093e-02	ci left: 2.692557e-03	ci right 2.967619e-03	k: 1640	n:580000
Cons ci ratio: 7.570023e-03	ci left: 3.149603e-01	ci right 3.173553e-01	k: 183371	n:580000
KS ci ratio: 1.916642e-01	ci left: 6.516280e-04	ci right 7.913681e-04	k: 417	n:580000
CTAG2   580000 perm   246 sec   (2361 perm/sec)   p_kst 7.189655e-04   p_cons 3.161569e-01   p_joint 2.827586e-03

Joint ci ratio: 9.225416e-02	ci left: 2.910065e-03	ci right 3.193155e-03	k: 1799	n:590000
Cons ci ratio: 7.506467e-03	ci left: 3.149204e-01	ci right 3.172949e-01	k: 186503	n:590000
KS ci ratio: 1.896333e-01	ci left: 6.551097e-04	ci right 7.939364e-04	k: 426	n:590000
CTAG2   590000 perm   252 sec   (2338 perm/sec)   p_kst 7.220339e-04   p_cons 3.161068e-01   p_joint 3.049153e-03

Joint ci ratio: 9.122030e-02	ci left: 2.928331e-03	ci right 3.209835e-03	k: 1840	n:600000
Cons ci ratio: 7.444054e-03	ci left: 3.149069e-01	ci right 3.172615e-01	k: 189650	n:600000
KS ci ratio: 1.876656e-01	ci left: 6.584829e-04	ci right 7.964116e-04	k: 435	n:600000
CTAG2   600000 perm   259 sec   (2315 perm/sec)   p_kst 7.250000e-04   p_cons 3.160833e-01   p_joint 3.066667e-03

Joint ci ratio: 9.043760e-02	ci left: 2.931593e-03	ci right 3.210865e-03	k: 1872	n:610000
Cons ci ratio: 7.384377e-03	ci left: 3.148235e-01	ci right 3.171585e-01	k: 192754	n:610000
KS ci ratio: 1.872374e-01	ci left: 6.508127e-04	ci right 7.867883e-04	k: 437	n:610000
CTAG2   610000 perm   266 sec   (2293 perm/sec)   p_kst 7.163934e-04   p_cons 3.159902e-01   p_joint 3.068852e-03

Joint ci ratio: 9.063420e-02	ci left: 2.871694e-03	ci right 3.145886e-03	k: 1864	n:620000
Cons ci ratio: 7.324253e-03	ci left: 3.148525e-01	ci right 3.171686e-01	k: 195926	n:620000
KS ci ratio: 1.863888e-01	ci left: 6.464655e-04	ci right 7.808514e-04	k: 441	n:620000
CTAG2   620000 perm   273 sec   (2270 perm/sec)   p_kst 7.112903e-04   p_cons 3.160097e-01   p_joint 3.006452e-03

Joint ci ratio: 8.989014e-02	ci left: 2.874207e-03	ci right 3.146268e-03	k: 1895	n:630000
Cons ci ratio: 7.265281e-03	ci left: 3.148980e-01	ci right 3.171957e-01	k: 199109	n:630000
KS ci ratio: 1.847244e-01	ci left: 6.483128e-04	ci right 7.817444e-04	k: 449	n:630000
CTAG2   630000 perm   280 sec   (2249 perm/sec)   p_kst 7.126984e-04   p_cons 3.160460e-01   p_joint 3.007937e-03

Joint ci ratio: 8.953772e-02	ci left: 2.852208e-03	ci right 3.121072e-03	k: 1910	n:640000
Cons ci ratio: 7.208128e-03	ci left: 3.149172e-01	ci right 3.171969e-01	k: 202276	n:640000
KS ci ratio: 1.835053e-01	ci left: 6.471258e-04	ci right 7.793364e-04	k: 455	n:640000
CTAG2   640000 perm   287 sec   (2229 perm/sec)   p_kst 7.109375e-04   p_cons 3.160562e-01   p_joint 2.984375e-03

Joint ci ratio: 9.088520e-02	ci left: 2.724109e-03	ci right 2.984968e-03	k: 1854	n:650000
Cons ci ratio: 7.153117e-03	ci left: 3.148867e-01	ci right 3.171487e-01	k: 205411	n:650000
KS ci ratio: 1.809433e-01	ci left: 6.562580e-04	ci right 7.882575e-04	k: 468	n:650000
CTAG2   650000 perm   294 sec   (2208 perm/sec)   p_kst 7.200000e-04   p_cons 3.160169e-01   p_joint 2.852308e-03

Joint ci ratio: 9.015898e-02	ci left: 2.727261e-03	ci right 2.986224e-03	k: 1884	n:660000
Cons ci ratio: 7.099222e-03	ci left: 3.148648e-01	ci right 3.171095e-01	k: 208551	n:660000
KS ci ratio: 1.792316e-01	ci left: 6.593365e-04	ci right 7.905645e-04	k: 477	n:660000
CTAG2   660000 perm   302 sec   (2189 perm/sec)   p_kst 7.227273e-04   p_cons 3.159864e-01   p_joint 2.854545e-03

Joint ci ratio: 8.961430e-02	ci left: 2.720112e-03	ci right 2.976754e-03	k: 1907	n:670000
Cons ci ratio: 7.046187e-03	ci left: 3.148645e-01	ci right 3.170924e-01	k: 211705	n:670000
KS ci ratio: 1.772037e-01	ci left: 6.651814e-04	ci right 7.959143e-04	k: 488	n:670000
CTAG2   670000 perm   309 sec   (2168 perm/sec)   p_kst 7.283582e-04   p_cons 3.159776e-01   p_joint 2.846269e-03

Joint ci ratio: 9.069505e-02	ci left: 2.615419e-03	ci right 2.865318e-03	k: 1862	n:680000
Cons ci ratio: 6.993918e-03	ci left: 3.148892e-01	ci right 3.171006e-01	k: 214876	n:680000
KS ci ratio: 1.750680e-01	ci left: 6.722686e-04	ci right 8.026336e-04	k: 500	n:680000
CTAG2   680000 perm   316 sec   (2149 perm/sec)   p_kst 7.352941e-04   p_cons 3.159941e-01   p_joint 2.738235e-03

Joint ci ratio: 9.518148e-02	ci left: 2.335429e-03	ci right 2.570229e-03	k: 1691	n:690000
Cons ci ratio: 6.941748e-03	ci left: 3.149784e-01	ci right 3.171739e-01	k: 218092	n:690000
KS ci ratio: 1.738577e-01	ci left: 6.722275e-04	ci right 8.015888e-04	k: 507	n:690000
CTAG2   690000 perm   324 sec   (2129 perm/sec)   p_kst 7.347826e-04   p_cons 3.160754e-01   p_joint 2.450725e-03

Joint ci ratio: 8.672762e-02	ci left: 2.783763e-03	ci right 3.037522e-03	k: 2036	n:700000
Cons ci ratio: 6.892003e-03	ci left: 3.149852e-01	ci right 3.171649e-01	k: 221252	n:700000
KS ci ratio: 1.726722e-01	ci left: 6.721906e-04	ci right 8.005707e-04	k: 514	n:700000
CTAG2   700000 perm   332 sec   (2110 perm/sec)   p_kst 7.342857e-04   p_cons 3.160743e-01   p_joint 2.908571e-03

Joint ci ratio: 8.601246e-02	ci left: 2.791408e-03	ci right 3.043661e-03	k: 2070	n:710000
Cons ci ratio: 6.844316e-03	ci left: 3.149285e-01	ci right 3.170927e-01	k: 224367	n:710000
KS ci ratio: 1.708567e-01	ci left: 6.775502e-04	ci right 8.054532e-04	k: 525	n:710000
CTAG2   710000 perm   340 sec   (2091 perm/sec)   p_kst 7.394366e-04   p_cons 3.160099e-01   p_joint 2.915493e-03

Joint ci ratio: 8.525381e-02	ci left: 2.802928e-03	ci right 3.053876e-03	k: 2107	n:720000
Cons ci ratio: 6.796164e-03	ci left: 3.149650e-01	ci right 3.171142e-01	k: 227548	n:720000
KS ci ratio: 1.697311e-01	ci left: 6.774477e-04	ci right 8.044026e-04	k: 532	n:720000
CTAG2   720000 perm   347 sec   (2073 perm/sec)   p_kst 7.388889e-04   p_cons 3.160389e-01   p_joint 2.926389e-03

Joint ci ratio: 8.641434e-02	ci left: 2.689459e-03	ci right 2.933691e-03	k: 2051	n:730000
Cons ci ratio: 6.748265e-03	ci left: 3.150485e-01	ci right 3.171831e-01	k: 230764	n:730000
KS ci ratio: 1.681606e-01	ci left: 6.812871e-04	ci right 8.076606e-04	k: 542	n:730000
CTAG2   730000 perm   355 sec   (2055 perm/sec)   p_kst 7.424658e-04   p_cons 3.161151e-01   p_joint 2.809589e-03

Joint ci ratio: 8.635272e-02	ci left: 2.657079e-03	ci right 2.898190e-03	k: 2054	n:740000
Cons ci ratio: 6.700486e-03	ci left: 3.151865e-01	ci right 3.173068e-01	k: 234022	n:740000
KS ci ratio: 1.664824e-01	ci left: 6.863231e-04	ci right 8.122328e-04	k: 553	n:740000
CTAG2   740000 perm   363 sec   (2037 perm/sec)   p_kst 7.472973e-04   p_cons 3.162459e-01   p_joint 2.775676e-03

Joint ci ratio: 8.189840e-02	ci left: 2.920582e-03	ci right 3.171281e-03	k: 2283	n:750000
Cons ci ratio: 6.655450e-03	ci left: 3.152076e-01	ci right 3.173138e-01	k: 237195	n:750000
KS ci ratio: 1.649996e-01	ci left: 6.899525e-04	ci right 8.152888e-04	k: 563	n:750000
CTAG2   750000 perm   371 sec   (2020 perm/sec)   p_kst 7.506667e-04   p_cons 3.162600e-01   p_joint 3.044000e-03

Joint ci ratio: 8.145413e-02	ci left: 2.914375e-03	ci right 3.163121e-03	k: 2308	n:760000
Cons ci ratio: 6.611431e-03	ci left: 3.152204e-01	ci right 3.173126e-01	k: 240362	n:760000
KS ci ratio: 1.639851e-01	ci left: 6.897055e-04	ci right 8.141507e-04	k: 570	n:760000
CTAG2   760000 perm   380 sec   (2002 perm/sec)   p_kst 7.500000e-04   p_cons 3.162658e-01   p_joint 3.036842e-03

Joint ci ratio: 7.585979e-02	ci left: 3.324714e-03	ci right 3.588134e-03	k: 2660	n:770000
Cons ci ratio: 6.568964e-03	ci left: 3.151874e-01	ci right 3.172659e-01	k: 243494	n:770000
KS ci ratio: 1.625675e-01	ci left: 6.932048e-04	ci right 8.170944e-04	k: 580	n:770000
CTAG2   770000 perm   388 sec   (1985 perm/sec)   p_kst 7.532468e-04   p_cons 3.162260e-01   p_joint 3.454545e-03

Joint ci ratio: 7.546412e-02	ci left: 3.317307e-03	ci right 3.578709e-03	k: 2688	n:780000
Cons ci ratio: 6.526744e-03	ci left: 3.151925e-01	ci right 3.172576e-01	k: 246655	n:780000
KS ci ratio: 1.617347e-01	ci left: 6.916977e-04	ci right 8.146230e-04	k: 586	n:780000
CTAG2   780000 perm   396 sec   (1968 perm/sec)   p_kst 7.512821e-04   p_cons 3.162244e-01   p_joint 3.446154e-03

Joint ci ratio: 7.926798e-02	ci left: 2.963716e-03	ci right 3.209570e-03	k: 2437	n:790000
Cons ci ratio: 6.484664e-03	ci left: 3.152417e-01	ci right 3.172938e-01	k: 249851	n:790000
KS ci ratio: 1.609146e-01	ci left: 6.902303e-04	ci right 8.122127e-04	k: 592	n:790000
CTAG2   790000 perm   405 sec   (1951 perm/sec)   p_kst 7.493671e-04   p_cons 3.162671e-01   p_joint 3.084810e-03

Joint ci ratio: 7.873678e-02	ci left: 2.967105e-03	ci right 3.211515e-03	k: 2470	n:800000
Cons ci ratio: 6.444840e-03	ci left: 3.151923e-01	ci right 3.172315e-01	k: 252969	n:800000
KS ci ratio: 1.602407e-01	ci left: 6.876012e-04	ci right 8.085611e-04	k: 597	n:800000
CTAG2   800000 perm   413 sec   (1935 perm/sec)   p_kst 7.462500e-04   p_cons 3.162112e-01   p_joint 3.087500e-03

Joint ci ratio: 7.896298e-02	ci left: 2.913528e-03	ci right 3.154246e-03	k: 2456	n:810000
Cons ci ratio: 6.405813e-03	ci left: 3.151393e-01	ci right 3.171657e-01	k: 256083	n:810000
KS ci ratio: 1.595752e-01	ci left: 6.850380e-04	ci right 8.049986e-04	k: 602	n:810000
CTAG2   810000 perm   422 sec   (1920 perm/sec)   p_kst 7.432099e-04   p_cons 3.161519e-01   p_joint 3.032099e-03

Joint ci ratio: 8.026926e-02	ci left: 2.783566e-03	ci right 3.017529e-03	k: 2377	n:820000
Cons ci ratio: 6.366841e-03	ci left: 3.151315e-01	ci right 3.171454e-01	k: 259233	n:820000
KS ci ratio: 1.590489e-01	ci left: 6.813674e-04	ci right 8.002540e-04	k: 606	n:820000
CTAG2   820000 perm   431 sec   (1904 perm/sec)   p_kst 7.390244e-04   p_cons 3.161378e-01   p_joint 2.898780e-03

Joint ci ratio: 8.040642e-02	ci left: 2.740582e-03	ci right 2.971343e-03	k: 2369	n:830000
Cons ci ratio: 6.327372e-03	ci left: 3.152057e-01	ci right 3.172076e-01	k: 262451	n:830000
KS ci ratio: 1.585277e-01	ci left: 6.777858e-04	ci right 7.956232e-04	k: 610	n:830000
CTAG2   830000 perm   439 sec   (1889 perm/sec)   p_kst 7.349398e-04   p_cons 3.162060e-01   p_joint 2.854217e-03

Joint ci ratio: 7.996909e-02	ci left: 2.738287e-03	ci right 2.967543e-03	k: 2395	n:840000
Cons ci ratio: 6.289286e-03	ci left: 3.152330e-01	ci right 3.172230e-01	k: 265631	n:840000
KS ci ratio: 1.578833e-01	ci left: 6.754336e-04	ci right 7.923394e-04	k: 615	n:840000
CTAG2   840000 perm   448 sec   (1874 perm/sec)   p_kst 7.321429e-04   p_cons 3.162274e-01   p_joint 2.851190e-03

Joint ci ratio: 7.382672e-02	ci left: 3.183805e-03	ci right 3.429010e-03	k: 2809	n:850000
Cons ci ratio: 6.251029e-03	ci left: 3.153185e-01	ci right 3.172969e-01	k: 268861	n:850000
KS ci ratio: 1.573735e-01	ci left: 6.720075e-04	ci right 7.879092e-04	k: 619	n:850000
CTAG2   850000 perm   457 sec   (1859 perm/sec)   p_kst 7.282353e-04   p_cons 3.163071e-01   p_joint 3.304706e-03

Joint ci ratio: 7.497447e-02	ci left: 3.049778e-03	ci right 3.288471e-03	k: 2724	n:860000
Cons ci ratio: 6.214765e-03	ci left: 3.153114e-01	ci right 3.172782e-01	k: 272013	n:860000
KS ci ratio: 1.567429e-01	ci left: 6.697788e-04	ci right 7.847899e-04	k: 624	n:860000
CTAG2   860000 perm   466 sec   (1846 perm/sec)   p_kst 7.255814e-04   p_cons 3.162942e-01   p_joint 3.167442e-03

Joint ci ratio: 7.448390e-02	ci left: 3.055330e-03	ci right 3.292825e-03	k: 2760	n:870000
Cons ci ratio: 6.179896e-03	ci left: 3.152505e-01	ci right 3.172059e-01	k: 275118	n:870000
KS ci ratio: 1.551373e-01	ci left: 6.764399e-04	ci right 7.912942e-04	k: 637	n:870000
CTAG2   870000 perm   475 sec   (1832 perm/sec)   p_kst 7.321839e-04   p_cons 3.162276e-01   p_joint 3.172414e-03

Joint ci ratio: 7.435030e-02	ci left: 3.031761e-03	ci right 3.266983e-03	k: 2770	n:880000
Cons ci ratio: 6.143606e-03	ci left: 3.153318e-01	ci right 3.172762e-01	k: 278347	n:880000
KS ci ratio: 1.544130e-01	ci left: 6.753071e-04	ci right 7.893843e-04	k: 643	n:880000
CTAG2   880000 perm   484 sec   (1817 perm/sec)   p_kst 7.306818e-04   p_cons 3.163034e-01   p_joint 3.147727e-03

Joint ci ratio: 7.387180e-02	ci left: 3.037396e-03	ci right 3.271474e-03	k: 2806	n:890000
Cons ci ratio: 6.109074e-03	ci left: 3.153317e-01	ci right 3.172650e-01	k: 281505	n:890000
KS ci ratio: 1.534627e-01	ci left: 6.763620e-04	ci right 7.898495e-04	k: 651	n:890000
CTAG2   890000 perm   494 sec   (1803 perm/sec)   p_kst 7.314607e-04   p_cons 3.162978e-01   p_joint 3.152809e-03

Joint ci ratio: 7.372832e-02	ci left: 3.015643e-03	ci right 3.247573e-03	k: 2817	n:900000
Cons ci ratio: 6.075929e-03	ci left: 3.152738e-01	ci right 3.171963e-01	k: 284611	n:900000
KS ci ratio: 1.525298e-01	ci left: 6.773954e-04	ci right 7.903023e-04	k: 659	n:900000
CTAG2   900000 perm   503 sec   (1790 perm/sec)   p_kst 7.322222e-04   p_cons 3.162344e-01   p_joint 3.130000e-03

Joint ci ratio: 7.326166e-02	ci left: 3.021338e-03	ci right 3.252173e-03	k: 2853	n:910000
Cons ci ratio: 6.042642e-03	ci left: 3.152655e-01	ci right 3.171774e-01	k: 287761	n:910000
KS ci ratio: 1.521846e-01	ci left: 6.731224e-04	ci right 7.850401e-04	k: 662	n:910000
CTAG2   910000 perm   512 sec   (1777 perm/sec)   p_kst 7.274725e-04   p_cons 3.162209e-01   p_joint 3.135165e-03

Joint ci ratio: 7.340495e-02	ci left: 2.976757e-03	ci right 3.204650e-03	k: 2842	n:920000
Cons ci ratio: 6.009655e-03	ci left: 3.152748e-01	ci right 3.171763e-01	k: 290927	n:920000
KS ci ratio: 1.515008e-01	ci left: 6.720798e-04	ci right 7.832764e-04	k: 668	n:920000
CTAG2   920000 perm   522 sec   (1764 perm/sec)   p_kst 7.260870e-04   p_cons 3.162250e-01   p_joint 3.089130e-03

Joint ci ratio: 7.308455e-02	ci left: 2.971138e-03	ci right 3.197566e-03	k: 2867	n:930000
Cons ci ratio: 5.977886e-03	ci left: 3.152346e-01	ci right 3.171257e-01	k: 294047	n:930000
KS ci ratio: 1.510501e-01	ci left: 6.689913e-04	ci right 7.793180e-04	k: 672	n:930000
CTAG2   930000 perm   531 sec   (1750 perm/sec)   p_kst 7.225806e-04   p_cons 3.161796e-01   p_joint 3.082796e-03

Joint ci ratio: 7.273049e-02	ci left: 2.968774e-03	ci right 3.193880e-03	k: 2895	n:940000
Cons ci ratio: 5.946776e-03	ci left: 3.151835e-01	ci right 3.170644e-01	k: 297156	n:940000
KS ci ratio: 1.501602e-01	ci left: 6.700644e-04	ci right 7.798584e-04	k: 680	n:940000
CTAG2   940000 perm   541 sec   (1737 perm/sec)   p_kst 7.234043e-04   p_cons 3.161234e-01   p_joint 3.079787e-03

Joint ci ratio: 7.233192e-02	ci left: 2.970597e-03	ci right 3.194555e-03	k: 2927	n:950000
Cons ci ratio: 5.914750e-03	ci left: 3.152355e-01	ci right 3.171066e-01	k: 300362	n:950000
KS ci ratio: 1.497214e-01	ci left: 6.670635e-04	ci right 7.760179e-04	k: 684	n:950000
CTAG2   950000 perm   551 sec   (1724 perm/sec)   p_kst 7.200000e-04   p_cons 3.161705e-01   p_joint 3.081053e-03

Joint ci ratio: 7.574324e-02	ci left: 2.676883e-03	ci right 2.888634e-03	k: 2670	n:960000
Cons ci ratio: 5.883845e-03	ci left: 3.152418e-01	ci right 3.171031e-01	k: 303525	n:960000
KS ci ratio: 1.488547e-01	ci left: 6.681370e-04	ci right 7.765787e-04	k: 692	n:960000
CTAG2   960000 perm   561 sec   (1711 perm/sec)   p_kst 7.208333e-04   p_cons 3.161719e-01   p_joint 2.781250e-03

Joint ci ratio: 7.744933e-02	ci left: 2.531982e-03	ci right 2.736985e-03	k: 2554	n:970000
Cons ci ratio: 5.854523e-03	ci left: 3.151665e-01	ci right 3.170181e-01	k: 306609	n:970000
KS ci ratio: 1.478972e-01	ci left: 6.701830e-04	ci right 7.781953e-04	k: 701	n:970000
CTAG2   970000 perm   571 sec   (1700 perm/sec)   p_kst 7.226804e-04   p_cons 3.160918e-01   p_joint 2.632990e-03

Joint ci ratio: 7.705826e-02	ci left: 2.532164e-03	ci right 2.736100e-03	k: 2580	n:980000
Cons ci ratio: 5.823627e-03	ci left: 3.152417e-01	ci right 3.170839e-01	k: 309839	n:980000
KS ci ratio: 1.469581e-01	ci left: 6.721893e-04	ci right 7.797766e-04	k: 710	n:980000
CTAG2   980000 perm   581 sec   (1688 perm/sec)   p_kst 7.244898e-04   p_cons 3.161622e-01   p_joint 2.632653e-03

Joint ci ratio: 7.673210e-02	ci left: 2.528381e-03	ci right 2.731112e-03	k: 2602	n:990000
Cons ci ratio: 5.793986e-03	ci left: 3.152578e-01	ci right 3.170907e-01	k: 313012	n:990000
KS ci ratio: 1.460366e-01	ci left: 6.741573e-04	ci right 7.813239e-04	k: 719	n:990000
CTAG2   990000 perm   591 sec   (1676 perm/sec)   p_kst 7.262626e-04   p_cons 3.161737e-01   p_joint 2.628283e-03

Joint ci ratio: 7.639545e-02	ci left: 2.525657e-03	ci right 2.727241e-03	k: 2625	n:1000000
Cons ci ratio: 5.764393e-03	ci left: 3.153037e-01	ci right 3.171274e-01	k: 316215	n:1000000
KS ci ratio: 1.450327e-01	ci left: 6.770517e-04	ci right 7.838745e-04	k: 729	n:1000000
CTAG2   1000000 perm   601 sec   (1664 perm/sec)   p_kst 7.290000e-04   p_cons 3.162150e-01   p_joint 2.625000e-03

Joint ci ratio: 7.613528e-02	ci left: 2.518132e-03	ci right 2.718401e-03	k: 2643	n:1010000
Cons ci ratio: 5.735223e-03	ci left: 3.153506e-01	ci right 3.171653e-01	k: 319420	n:1010000
KS ci ratio: 1.445387e-01	ci left: 6.751193e-04	ci right 7.812431e-04	k: 734	n:1010000
CTAG2   1010000 perm   611 sec   (1653 perm/sec)   p_kst 7.267327e-04   p_cons 3.162574e-01   p_joint 2.616832e-03

Joint ci ratio: 7.576368e-02	ci left: 2.518450e-03	ci right 2.717724e-03	k: 2669	n:1020000
Cons ci ratio: 5.706414e-03	ci left: 3.154025e-01	ci right 3.172084e-01	k: 322631	n:1020000
KS ci ratio: 1.443428e-01	ci left: 6.703903e-04	ci right 7.756156e-04	k: 736	n:1020000
CTAG2   1020000 perm   621 sec   (1641 perm/sec)   p_kst 7.215686e-04   p_cons 3.163049e-01   p_joint 2.616667e-03

Joint ci ratio: 7.133370e-02	ci left: 2.818999e-03	ci right 3.028472e-03	k: 3010	n:1030000
Cons ci ratio: 5.677754e-03	ci left: 3.154747e-01	ci right 3.172719e-01	k: 325864	n:1030000
KS ci ratio: 1.436622e-01	ci left: 6.704329e-04	ci right 7.751262e-04	k: 743	n:1030000
CTAG2   1030000 perm   632 sec   (1630 perm/sec)   p_kst 7.213592e-04   p_cons 3.163728e-01   p_joint 2.922330e-03

Joint ci ratio: 7.098094e-02	ci left: 2.820226e-03	ci right 3.028712e-03	k: 3040	n:1040000
Cons ci ratio: 5.649684e-03	ci left: 3.155331e-01	ci right 3.173218e-01	k: 329084	n:1040000
KS ci ratio: 1.430865e-01	ci left: 6.695487e-04	ci right 7.736491e-04	k: 749	n:1040000
CTAG2   1040000 perm   643 sec   (1618 perm/sec)   p_kst 7.201923e-04   p_cons 3.164269e-01   p_joint 2.923077e-03

Joint ci ratio: 7.077218e-02	ci left: 2.810205e-03	ci right 3.017314e-03	k: 3058	n:1050000
Cons ci ratio: 5.622745e-03	ci left: 3.155352e-01	ci right 3.173153e-01	k: 332246	n:1050000
KS ci ratio: 1.424234e-01	ci left: 6.696006e-04	ci right 7.731857e-04	k: 756	n:1050000
CTAG2   1050000 perm   653 sec   (1607 perm/sec)   p_kst 7.200000e-04   p_cons 3.164248e-01   p_joint 2.912381e-03

Joint ci ratio: 6.800818e-02	ci left: 3.018244e-03	ci right 3.231655e-03	k: 3311	n:1060000
Cons ci ratio: 5.597542e-03	ci left: 3.154327e-01	ci right 3.172042e-01	k: 335297	n:1060000
KS ci ratio: 1.419555e-01	ci left: 6.678327e-04	ci right 7.707762e-04	k: 761	n:1060000
CTAG2   1060000 perm   664 sec   (1597 perm/sec)   p_kst 7.179245e-04   p_cons 3.163179e-01   p_joint 3.123585e-03

Joint ci ratio: 6.828896e-02	ci left: 2.965230e-03	ci right 3.175792e-03	k: 3284	n:1070000
Cons ci ratio: 5.571615e-03	ci left: 3.154142e-01	ci right 3.171774e-01	k: 338436	n:1070000
KS ci ratio: 1.411244e-01	ci left: 6.697047e-04	ci right 7.722815e-04	k: 770	n:1070000
CTAG2   1070000 perm   675 sec   (1586 perm/sec)   p_kst 7.196262e-04   p_cons 3.162953e-01   p_joint 3.069159e-03

Joint ci ratio: 6.803076e-02	ci left: 2.960527e-03	ci right 3.169930e-03	k: 3309	n:1080000
Cons ci ratio: 5.545499e-03	ci left: 3.154387e-01	ci right 3.171937e-01	k: 341621	n:1080000
KS ci ratio: 1.408509e-01	ci left: 6.661834e-04	ci right 7.680065e-04	k: 773	n:1080000
CTAG2   1080000 perm   686 sec   (1575 perm/sec)   p_kst 7.157407e-04   p_cons 3.163157e-01   p_joint 3.063889e-03

Joint ci ratio: 6.832219e-02	ci left: 2.908114e-03	ci right 3.114725e-03	k: 3281	n:1090000
Cons ci ratio: 5.520414e-03	ci left: 3.154105e-01	ci right 3.171574e-01	k: 344749	n:1090000
KS ci ratio: 1.403082e-01	ci left: 6.653826e-04	ci right 7.666587e-04	k: 779	n:1090000
CTAG2   1090000 perm   697 sec   (1565 perm/sec)   p_kst 7.146789e-04   p_cons 3.162835e-01   p_joint 3.010092e-03

Joint ci ratio: 6.803266e-02	ci left: 2.906697e-03	ci right 3.112298e-03	k: 3309	n:1100000
Cons ci ratio: 5.495008e-03	ci left: 3.154346e-01	ci right 3.171736e-01	k: 347934	n:1100000
KS ci ratio: 1.396829e-01	ci left: 6.654744e-04	ci right 7.662755e-04	k: 786	n:1100000
CTAG2   1100000 perm   707 sec   (1555 perm/sec)   p_kst 7.145455e-04   p_cons 3.163036e-01   p_joint 3.008182e-03

Joint ci ratio: 6.772644e-02	ci left: 2.907079e-03	ci right 3.111745e-03	k: 3339	n:1110000
Cons ci ratio: 5.469175e-03	ci left: 3.155195e-01	ci right 3.172508e-01	k: 351187	n:1110000
KS ci ratio: 1.395060e-01	ci left: 6.612180e-04	ci right 7.612369e-04	k: 788	n:1110000
CTAG2   1110000 perm   718 sec   (1545 perm/sec)   p_kst 7.099099e-04   p_cons 3.163847e-01   p_joint 3.008108e-03

Joint ci ratio: 6.745444e-02	ci left: 2.904822e-03	ci right 3.108476e-03	k: 3366	n:1120000
Cons ci ratio: 5.443568e-03	ci left: 3.156137e-01	ci right 3.173373e-01	k: 354452	n:1120000
KS ci ratio: 1.387170e-01	ci left: 6.630703e-04	ci right 7.627553e-04	k: 797	n:1120000
CTAG2   1120000 perm   730 sec   (1535 perm/sec)   p_kst 7.116071e-04   p_cons 3.164750e-01   p_joint 3.005357e-03

Joint ci ratio: 6.712620e-02	ci left: 2.907828e-03	ci right 3.110662e-03	k: 3399	n:1130000
Cons ci ratio: 5.419614e-03	ci left: 3.156027e-01	ci right 3.173186e-01	k: 357600	n:1130000
KS ci ratio: 1.381985e-01	ci left: 6.623282e-04	ci right 7.614988e-04	k: 803	n:1130000
CTAG2   1130000 perm   741 sec   (1525 perm/sec)   p_kst 7.106195e-04   p_cons 3.164602e-01   p_joint 3.007965e-03

Joint ci ratio: 6.686134e-02	ci left: 2.905608e-03	ci right 3.107456e-03	k: 3426	n:1140000
Cons ci ratio: 5.395601e-03	ci left: 3.156217e-01	ci right 3.173301e-01	k: 360782	n:1140000
KS ci ratio: 1.375160e-01	ci left: 6.632939e-04	ci right 7.620784e-04	k: 811	n:1140000
CTAG2   1140000 perm   752 sec   (1515 perm/sec)   p_kst 7.114035e-04   p_cons 3.164754e-01   p_joint 3.005263e-03

Joint ci ratio: 6.689159e-02	ci left: 2.877776e-03	ci right 3.077784e-03	k: 3423	n:1150000
Cons ci ratio: 5.373081e-03	ci left: 3.155457e-01	ci right 3.172465e-01	k: 363855	n:1150000
KS ci ratio: 1.370947e-01	ci left: 6.617245e-04	ci right 7.599488e-04	k: 816	n:1150000
CTAG2   1150000 perm   764 sec   (1506 perm/sec)   p_kst 7.095652e-04   p_cons 3.163957e-01   p_joint 2.976522e-03

Joint ci ratio: 6.688265e-02	ci left: 2.853814e-03	ci right 3.052129e-03	k: 3424	n:1160000
Cons ci ratio: 5.351247e-03	ci left: 3.154383e-01	ci right 3.171316e-01	k: 366890	n:1160000
KS ci ratio: 1.365941e-01	ci left: 6.610153e-04	ci right 7.587469e-04	k: 822	n:1160000
CTAG2   1160000 perm   775 sec   (1496 perm/sec)   p_kst 7.086207e-04   p_cons 3.162845e-01   p_joint 2.951724e-03

Joint ci ratio: 6.464986e-02	ci left: 3.031187e-03	ci right 3.234533e-03	k: 3664	n:1170000
Cons ci ratio: 5.328306e-03	ci left: 3.154437e-01	ci right 3.171298e-01	k: 370055	n:1170000
KS ci ratio: 1.358532e-01	ci left: 6.627958e-04	ci right 7.602161e-04	k: 831	n:1170000
CTAG2   1170000 perm   787 sec   (1487 perm/sec)   p_kst 7.102564e-04   p_cons 3.162863e-01   p_joint 3.131624e-03

Joint ci ratio: 6.463304e-02	ci left: 3.007165e-03	ci right 3.208846e-03	k: 3666	n:1180000
Cons ci ratio: 5.305555e-03	ci left: 3.154576e-01	ci right 3.171365e-01	k: 373230	n:1180000
KS ci ratio: 1.353660e-01	ci left: 6.620911e-04	ci right 7.590308e-04	k: 837	n:1180000
CTAG2   1180000 perm   798 sec   (1478 perm/sec)   p_kst 7.093220e-04   p_cons 3.162966e-01   p_joint 3.106780e-03

Joint ci ratio: 6.479359e-02	ci left: 2.967011e-03	ci right 3.166512e-03	k: 3648	n:1190000
Cons ci ratio: 5.283000e-03	ci left: 3.154788e-01	ci right 3.171507e-01	k: 376414	n:1190000
KS ci ratio: 1.346448e-01	ci left: 6.638350e-04	ci right 7.604707e-04	k: 846	n:1190000
CTAG2   1190000 perm   810 sec   (1469 perm/sec)   p_kst 7.109244e-04   p_cons 3.163143e-01   p_joint 3.065546e-03

Joint ci ratio: 6.282184e-02	ci left: 3.132544e-03	ci right 3.336532e-03	k: 3880	n:1200000
Cons ci ratio: 5.261196e-03	ci left: 3.154613e-01	ci right 3.171262e-01	k: 379552	n:1200000
KS ci ratio: 1.341705e-01	ci left: 6.631349e-04	ci right 7.593015e-04	k: 852	n:1200000
CTAG2   1200000 perm   822 sec   (1460 perm/sec)   p_kst 7.100000e-04   p_cons 3.162933e-01   p_joint 3.233333e-03

Joint ci ratio: 6.301846e-02	ci left: 3.087130e-03	ci right 3.288813e-03	k: 3856	n:1210000
Cons ci ratio: 5.239380e-03	ci left: 3.154673e-01	ci right 3.171253e-01	k: 382718	n:1210000
KS ci ratio: 1.336233e-01	ci left: 6.632457e-04	ci right 7.590050e-04	k: 859	n:1210000
CTAG2   1210000 perm   834 sec   (1451 perm/sec)   p_kst 7.099174e-04   p_cons 3.162959e-01   p_joint 3.186777e-03

Joint ci ratio: 6.279106e-02	ci left: 3.084416e-03	ci right 3.285168e-03	k: 3884	n:1220000
Cons ci ratio: 5.217408e-03	ci left: 3.155084e-01	ci right 3.171597e-01	k: 385927	n:1220000
KS ci ratio: 1.330061e-01	ci left: 6.641480e-04	ci right 7.595596e-04	k: 867	n:1220000
CTAG2   1220000 perm   846 sec   (1443 perm/sec)   p_kst 7.106557e-04   p_cons 3.163336e-01   p_joint 3.183607e-03

Joint ci ratio: 6.261427e-02	ci left: 3.076944e-03	ci right 3.276626e-03	k: 3906	n:1230000
Cons ci ratio: 5.197126e-03	ci left: 3.154311e-01	ci right 3.170755e-01	k: 388991	n:1230000
KS ci ratio: 1.325488e-01	ci left: 6.634644e-04	ci right 7.584243e-04	k: 873	n:1230000
CTAG2   1230000 perm   858 sec   (1434 perm/sec)   p_kst 7.097561e-04   p_cons 3.162528e-01   p_joint 3.175610e-03

Joint ci ratio: 6.229598e-02	ci left: 3.083885e-03	ci right 3.282963e-03	k: 3946	n:1240000
Cons ci ratio: 5.175158e-03	ci left: 3.155154e-01	ci right 3.171532e-01	k: 392254	n:1240000
KS ci ratio: 1.318715e-01	ci left: 6.651319e-04	ci right 7.598059e-04	k: 882	n:1240000
CTAG2   1240000 perm   870 sec   (1425 perm/sec)   p_kst 7.112903e-04   p_cons 3.163339e-01   p_joint 3.182258e-03

Joint ci ratio: 6.200590e-02	ci left: 3.088354e-03	ci right 3.286759e-03	k: 3983	n:1250000
Cons ci ratio: 5.155067e-03	ci left: 3.154640e-01	ci right 3.170952e-01	k: 395349	n:1250000
KS ci ratio: 1.308380e-01	ci left: 6.706430e-04	ci right 7.652952e-04	k: 896	n:1250000
CTAG2   1250000 perm   882 sec   (1416 perm/sec)   p_kst 7.168000e-04   p_cons 3.162792e-01   p_joint 3.186400e-03

Joint ci ratio: 6.173524e-02	ci left: 3.091192e-03	ci right 3.288881e-03	k: 4018	n:1260000
Cons ci ratio: 5.133240e-03	ci left: 3.155793e-01	ci right 3.172041e-01	k: 398653	n:1260000
KS ci ratio: 1.301864e-01	ci left: 6.722301e-04	ci right 7.665973e-04	k: 905	n:1260000
CTAG2   1260000 perm   895 sec   (1408 perm/sec)   p_kst 7.182540e-04   p_cons 3.163913e-01   p_joint 3.188889e-03

Joint ci ratio: 5.747965e-02	ci left: 3.543918e-03	ci right 3.754419e-03	k: 4633	n:1270000
Cons ci ratio: 5.113055e-03	ci left: 3.155770e-01	ci right 3.171955e-01	k: 401810	n:1270000
KS ci ratio: 1.290514e-01	ci left: 6.791270e-04	ci right 7.735676e-04	k: 921	n:1270000
CTAG2   1270000 perm   907 sec   (1400 perm/sec)   p_kst 7.251969e-04   p_cons 3.163858e-01   p_joint 3.648031e-03

Joint ci ratio: 5.880042e-02	ci left: 3.358393e-03	ci right 3.562614e-03	k: 4428	n:1280000
Cons ci ratio: 5.092756e-03	ci left: 3.156045e-01	ci right 3.172166e-01	k: 405005	n:1280000
KS ci ratio: 1.287725e-01	ci left: 6.768455e-04	ci right 7.707499e-04	k: 925	n:1280000
CTAG2   1280000 perm   920 sec   (1391 perm/sec)   p_kst 7.226562e-04   p_cons 3.164102e-01   p_joint 3.459375e-03

Joint ci ratio: 5.856286e-02	ci left: 3.359857e-03	ci right 3.563313e-03	k: 4464	n:1290000
Cons ci ratio: 5.073298e-03	ci left: 3.155804e-01	ci right 3.171863e-01	k: 408134	n:1290000
KS ci ratio: 1.281512e-01	ci left: 6.783512e-04	ci right 7.719759e-04	k: 934	n:1290000
CTAG2   1290000 perm   933 sec   (1383 perm/sec)   p_kst 7.240310e-04   p_cons 3.163829e-01   p_joint 3.460465e-03

Joint ci ratio: 5.876871e-02	ci left: 3.310513e-03	ci right 3.511710e-03	k: 4433	n:1300000
Cons ci ratio: 5.053943e-03	ci left: 3.155667e-01	ci right 3.171664e-01	k: 411276	n:1300000
KS ci ratio: 1.276742e-01	ci left: 6.783455e-04	ci right 7.715944e-04	k: 941	n:1300000
CTAG2   1300000 perm   946 sec   (1375 perm/sec)   p_kst 7.238462e-04   p_cons 3.163662e-01   p_joint 3.410000e-03

Joint ci ratio: 5.853154e-02	ci left: 3.312320e-03	ci right 3.512786e-03	k: 4469	n:1310000
Cons ci ratio: 5.035316e-03	ci left: 3.155098e-01	ci right 3.171032e-01	k: 414361	n:1310000
KS ci ratio: 1.269350e-01	ci left: 6.812969e-04	ci right 7.743685e-04	k: 952	n:1310000
CTAG2   1310000 perm   958 sec   (1367 perm/sec)   p_kst 7.267176e-04   p_cons 3.163061e-01   p_joint 3.411450e-03

Joint ci ratio: 5.672098e-02	ci left: 3.503021e-03	ci right 3.708257e-03	k: 4758	n:1320000
Cons ci ratio: 5.017024e-03	ci left: 3.154424e-01	ci right 3.170297e-01	k: 417431	n:1320000
KS ci ratio: 1.263398e-01	ci left: 6.827377e-04	ci right 7.755361e-04	k: 961	n:1320000
CTAG2   1320000 perm   971 sec   (1359 perm/sec)   p_kst 7.280303e-04   p_cons 3.162356e-01   p_joint 3.604545e-03

Joint ci ratio: 5.730474e-02	ci left: 3.405527e-03	ci right 3.607171e-03	k: 4662	n:1330000
Cons ci ratio: 4.998913e-03	ci left: 3.153775e-01	ci right 3.169587e-01	k: 420503	n:1330000
KS ci ratio: 1.258177e-01	ci left: 6.834297e-04	ci right 7.759097e-04	k: 969	n:1330000
CTAG2   1330000 perm   984 sec   (1352 perm/sec)   p_kst 7.285714e-04   p_cons 3.161677e-01   p_joint 3.505263e-03

Joint ci ratio: 5.707260e-02	ci left: 3.408065e-03	ci right 3.609016e-03	k: 4700	n:1340000
Cons ci ratio: 4.980076e-03	ci left: 3.153933e-01	ci right 3.169687e-01	k: 423682	n:1340000
KS ci ratio: 1.253661e-01	ci left: 6.833893e-04	ci right 7.755072e-04	k: 976	n:1340000
CTAG2   1340000 perm   997 sec   (1344 perm/sec)   p_kst 7.283582e-04   p_cons 3.161806e-01   p_joint 3.507463e-03

Joint ci ratio: 5.748589e-02	ci left: 3.333898e-03	ci right 3.531946e-03	k: 4633	n:1350000
Cons ci ratio: 4.961519e-03	ci left: 3.154031e-01	ci right 3.169725e-01	k: 426853	n:1350000
KS ci ratio: 1.248560e-01	ci left: 6.840676e-04	ci right 7.758740e-04	k: 984	n:1350000
CTAG2   1350000 perm   1010 sec   (1336 perm/sec)   p_kst 7.288889e-04   p_cons 3.161874e-01   p_joint 3.431852e-03

Joint ci ratio: 5.431953e-02	ci left: 3.711066e-03	ci right 3.918997e-03	k: 5187	n:1360000
Cons ci ratio: 4.942815e-03	ci left: 3.154435e-01	ci right 3.170073e-01	k: 430066	n:1360000
KS ci ratio: 1.243520e-01	ci left: 6.847367e-04	ci right 7.762346e-04	k: 992	n:1360000
CTAG2   1360000 perm   1023 sec   (1329 perm/sec)   p_kst 7.294118e-04   p_cons 3.162250e-01   p_joint 3.813971e-03

Joint ci ratio: 5.448393e-02	ci left: 3.661656e-03	ci right 3.867458e-03	k: 5156	n:1370000
Cons ci ratio: 4.925260e-03	ci left: 3.154010e-01	ci right 3.169589e-01	k: 433166	n:1370000
KS ci ratio: 1.241024e-01	ci left: 6.825676e-04	ci right 7.735791e-04	k: 996	n:1370000
CTAG2   1370000 perm   1037 sec   (1322 perm/sec)   p_kst 7.270073e-04   p_cons 3.161796e-01   p_joint 3.763504e-03

Joint ci ratio: 5.428953e-02	ci left: 3.661569e-03	ci right 3.866609e-03	k: 5193	n:1380000
Cons ci ratio: 4.907718e-03	ci left: 3.153742e-01	ci right 3.169265e-01	k: 436287	n:1380000
KS ci ratio: 1.237925e-01	ci left: 6.811322e-04	ci right 7.717090e-04	k: 1001	n:1380000
CTAG2   1380000 perm   1050 sec   (1315 perm/sec)   p_kst 7.253623e-04   p_cons 3.161500e-01   p_joint 3.763043e-03

Joint ci ratio: 5.498529e-02	ci left: 3.542973e-03	ci right 3.743996e-03	k: 5063	n:1390000
Cons ci ratio: 4.889833e-03	ci left: 3.153947e-01	ci right 3.169414e-01	k: 439473	n:1390000
KS ci ratio: 1.233012e-01	ci left: 6.818095e-04	ci right 7.720903e-04	k: 1009	n:1390000
CTAG2   1390000 perm   1063 sec   (1308 perm/sec)   p_kst 7.258993e-04   p_cons 3.161676e-01   p_joint 3.642446e-03

Joint ci ratio: 5.477472e-02	ci left: 3.545141e-03	ci right 3.745492e-03	k: 5102	n:1400000
Cons ci ratio: 4.871676e-03	ci left: 3.154562e-01	ci right 3.169974e-01	k: 442717	n:1400000
KS ci ratio: 1.228158e-01	ci left: 6.824779e-04	ci right 7.724654e-04	k: 1017	n:1400000
CTAG2   1400000 perm   1077 sec   (1300 perm/sec)   p_kst 7.264286e-04   p_cons 3.162264e-01   p_joint 3.644286e-03

Joint ci ratio: 5.474852e-02	ci left: 3.523495e-03	ci right 3.722524e-03	k: 5107	n:1410000
Cons ci ratio: 4.854507e-03	ci left: 3.154467e-01	ci right 3.169824e-01	k: 445862	n:1410000
KS ci ratio: 1.223957e-01	ci left: 6.824499e-04	ci right 7.721037e-04	k: 1024	n:1410000
CTAG2   1410000 perm   1090 sec   (1293 perm/sec)   p_kst 7.262411e-04   p_cons 3.162142e-01   p_joint 3.621986e-03

Joint ci ratio: 5.343695e-02	ci left: 3.674448e-03	ci right 3.876879e-03	k: 5360	n:1420000
Cons ci ratio: 4.837542e-03	ci left: 3.154352e-01	ci right 3.169655e-01	k: 449004	n:1420000
KS ci ratio: 1.220983e-01	ci left: 6.810573e-04	ci right 7.702951e-04	k: 1029	n:1420000
CTAG2   1420000 perm   1104 sec   (1286 perm/sec)   p_kst 7.246479e-04   p_cons 3.162000e-01   p_joint 3.774648e-03

Joint ci ratio: 5.321394e-02	ci left: 3.679802e-03	ci right 3.881656e-03	k: 5405	n:1430000
Cons ci ratio: 4.820996e-03	ci left: 3.154023e-01	ci right 3.169272e-01	k: 452115	n:1430000
KS ci ratio: 1.215683e-01	ci left: 6.823966e-04	ci right 7.713938e-04	k: 1038	n:1430000
CTAG2   1430000 perm   1118 sec   (1279 perm/sec)   p_kst 7.258741e-04   p_cons 3.161643e-01   p_joint 3.779720e-03

Joint ci ratio: 4.989136e-02	ci left: 4.162230e-03	ci right 4.375882e-03	k: 6146	n:1440000
Cons ci ratio: 4.804271e-03	ci left: 3.154010e-01	ci right 3.169206e-01	k: 455271	n:1440000
KS ci ratio: 1.212188e-01	ci left: 6.816979e-04	ci right 7.703301e-04	k: 1044	n:1440000
CTAG2   1440000 perm   1132 sec   (1272 perm/sec)   p_kst 7.250000e-04   p_cons 3.161604e-01   p_joint 4.268056e-03

Joint ci ratio: 4.795251e-02	ci left: 4.477559e-03	ci right 4.698220e-03	k: 6651	n:1450000
Cons ci ratio: 4.787619e-03	ci left: 3.154087e-01	ci right 3.169231e-01	k: 458440	n:1450000
KS ci ratio: 1.206429e-01	ci left: 6.836845e-04	ci right 7.721225e-04	k: 1054	n:1450000
CTAG2   1450000 perm   1146 sec   (1265 perm/sec)   p_kst 7.268966e-04   p_cons 3.161655e-01   p_joint 4.586897e-03

Joint ci ratio: 4.776249e-02	ci left: 4.482758e-03	ci right 4.702776e-03	k: 6704	n:1460000
Cons ci ratio: 4.771079e-03	ci left: 3.154218e-01	ci right 3.169310e-01	k: 461617	n:1460000
KS ci ratio: 1.199061e-01	ci left: 6.876380e-04	ci right 7.760057e-04	k: 1067	n:1460000
CTAG2   1460000 perm   1160 sec   (1259 perm/sec)   p_kst 7.308219e-04   p_cons 3.161760e-01   p_joint 4.591781e-03

Joint ci ratio: 4.830542e-02	ci left: 4.352113e-03	ci right 4.568214e-03	k: 6555	n:1470000
Cons ci ratio: 4.754814e-03	ci left: 3.154252e-01	ci right 3.169292e-01	k: 464780	n:1470000
KS ci ratio: 1.195151e-01	ci left: 6.875795e-04	ci right 7.756312e-04	k: 1074	n:1470000
CTAG2   1470000 perm   1174 sec   (1252 perm/sec)   p_kst 7.306122e-04   p_cons 3.161769e-01   p_joint 4.459184e-03

Joint ci ratio: 4.856351e-02	ci left: 4.276646e-03	ci right 4.490166e-03	k: 6486	n:1480000
Cons ci ratio: 4.738240e-03	ci left: 3.154718e-01	ci right 3.169708e-01	k: 468007	n:1480000
KS ci ratio: 1.192935e-01	ci left: 6.855557e-04	ci right 7.731739e-04	k: 1078	n:1480000
CTAG2   1480000 perm   1189 sec   (1245 perm/sec)   p_kst 7.283784e-04   p_cons 3.162209e-01   p_joint 4.382432e-03

Joint ci ratio: 4.613742e-02	ci left: 4.710218e-03	ci right 4.933325e-03	k: 7183	n:1490000
Cons ci ratio: 4.722777e-03	ci left: 3.154319e-01	ci right 3.169258e-01	k: 471106	n:1490000
KS ci ratio: 1.187990e-01	ci left: 6.868151e-04	ci right 7.742048e-04	k: 1087	n:1490000
CTAG2   1490000 perm   1203 sec   (1239 perm/sec)   p_kst 7.295302e-04   p_cons 3.161785e-01   p_joint 4.820805e-03

Joint ci ratio: 4.608662e-02	ci left: 4.689359e-03	ci right 4.911227e-03	k: 7199	n:1500000
Cons ci ratio: 4.706832e-03	ci left: 3.154506e-01	ci right 3.169395e-01	k: 474292	n:1500000
KS ci ratio: 1.186357e-01	ci left: 6.841768e-04	ci right 7.711029e-04	k: 1090	n:1500000
CTAG2   1500000 perm   1217 sec   (1233 perm/sec)   p_kst 7.266667e-04   p_cons 3.161947e-01   p_joint 4.799333e-03

Joint ci ratio: 4.551292e-02	ci left: 4.777458e-03	ci right 5.000607e-03	k: 7381	n:1510000
Cons ci ratio: 4.691386e-03	ci left: 3.154378e-01	ci right 3.169218e-01	k: 477431	n:1510000
KS ci ratio: 1.183109e-01	ci left: 6.835016e-04	ci right 7.700875e-04	k: 1096	n:1510000
CTAG2   1510000 perm   1231 sec   (1226 perm/sec)   p_kst 7.258278e-04   p_cons 3.161795e-01   p_joint 4.888079e-03

Joint ci ratio: 4.584876e-02	ci left: 4.676431e-03	ci right 4.896515e-03	k: 7274	n:1520000
Cons ci ratio: 4.676539e-03	ci left: 3.153839e-01	ci right 3.168629e-01	k: 480507	n:1520000
KS ci ratio: 1.180959e-01	ci left: 6.815586e-04	ci right 7.677305e-04	k: 1100	n:1520000
CTAG2   1520000 perm   1246 sec   (1220 perm/sec)   p_kst 7.236842e-04   p_cons 3.161230e-01   p_joint 4.785526e-03

Joint ci ratio: 4.570766e-02	ci left: 4.674941e-03	ci right 4.894260e-03	k: 7319	n:1530000
Cons ci ratio: 4.660986e-03	ci left: 3.154090e-01	ci right 3.168832e-01	k: 483703	n:1530000
KS ci ratio: 1.177755e-01	ci left: 6.809099e-04	ci right 7.667499e-04	k: 1106	n:1530000
CTAG2   1530000 perm   1261 sec   (1213 perm/sec)   p_kst 7.228758e-04   p_cons 3.161458e-01   p_joint 4.783660e-03

Joint ci ratio: 4.583121e-02	ci left: 4.619546e-03	ci right 4.836868e-03	k: 7280	n:1540000
Cons ci ratio: 4.645692e-03	ci left: 3.154241e-01	ci right 3.168935e-01	k: 486884	n:1540000
KS ci ratio: 1.175105e-01	ci left: 6.796396e-04	ci right 7.651133e-04	k: 1111	n:1540000
CTAG2   1540000 perm   1276 sec   (1207 perm/sec)   p_kst 7.214286e-04   p_cons 3.161584e-01   p_joint 4.727273e-03

Joint ci ratio: 4.567774e-02	ci left: 4.620994e-03	ci right 4.837637e-03	k: 7329	n:1550000
Cons ci ratio: 4.630914e-03	ci left: 3.154048e-01	ci right 3.168694e-01	k: 490012	n:1550000
KS ci ratio: 1.171948e-01	ci left: 6.790121e-04	ci right 7.641616e-04	k: 1117	n:1550000
CTAG2   1550000 perm   1290 sec   (1201 perm/sec)   p_kst 7.206452e-04   p_cons 3.161368e-01   p_joint 4.728387e-03

Joint ci ratio: 4.554131e-02	ci left: 4.619256e-03	ci right 4.835153e-03	k: 7373	n:1560000
Cons ci ratio: 4.616104e-03	ci left: 3.154018e-01	ci right 3.168617e-01	k: 493165	n:1560000
KS ci ratio: 1.168296e-01	ci left: 6.790153e-04	ci right 7.638816e-04	k: 1124	n:1560000
CTAG2   1560000 perm   1306 sec   (1195 perm/sec)   p_kst 7.205128e-04   p_cons 3.161314e-01   p_joint 4.726282e-03

Joint ci ratio: 4.564473e-02	ci left: 4.569052e-03	ci right 4.783100e-03	k: 7340	n:1570000
Cons ci ratio: 4.601247e-03	ci left: 3.154167e-01	ci right 3.168719e-01	k: 496346	n:1570000
KS ci ratio: 1.164164e-01	ci left: 6.796373e-04	ci right 7.642602e-04	k: 1132	n:1570000
CTAG2   1570000 perm   1320 sec   (1189 perm/sec)   p_kst 7.210191e-04   p_cons 3.161439e-01   p_joint 4.675159e-03

Joint ci ratio: 4.755411e-02	ci left: 4.180428e-03	ci right 4.384687e-03	k: 6765	n:1580000
Cons ci ratio: 4.587001e-03	ci left: 3.153871e-01	ci right 3.168377e-01	k: 499457	n:1580000
KS ci ratio: 1.161094e-01	ci left: 6.790228e-04	ci right 7.633310e-04	k: 1138	n:1580000
CTAG2   1580000 perm   1335 sec   (1183 perm/sec)   p_kst 7.202532e-04   p_cons 3.161120e-01   p_joint 4.281646e-03

Joint ci ratio: 4.759362e-02	ci left: 4.147298e-03	ci right 4.350111e-03	k: 6754	n:1590000
Cons ci ratio: 4.572315e-03	ci left: 3.154119e-01	ci right 3.168580e-01	k: 502654	n:1590000
KS ci ratio: 1.158049e-01	ci left: 6.784164e-04	ci right 7.624132e-04	k: 1144	n:1590000
CTAG2   1590000 perm   1351 sec   (1177 perm/sec)   p_kst 7.194969e-04   p_cons 3.161346e-01   p_joint 4.247799e-03

Joint ci ratio: 4.757658e-02	ci left: 4.124464e-03	ci right 4.326087e-03	k: 6759	n:1600000
Cons ci ratio: 4.558758e-03	ci left: 3.153427e-01	ci right 3.167842e-01	k: 505701	n:1600000
KS ci ratio: 1.155027e-01	ci left: 6.778178e-04	ci right 7.615065e-04	k: 1150	n:1600000
CTAG2   1600000 perm   1366 sec   (1171 perm/sec)   p_kst 7.187500e-04   p_cons 3.160631e-01   p_joint 4.224375e-03

Joint ci ratio: 4.744348e-02	ci left: 4.122169e-03	ci right 4.323099e-03	k: 6797	n:1610000
Cons ci ratio: 4.544524e-03	ci left: 3.153502e-01	ci right 3.167871e-01	k: 508870	n:1610000
KS ci ratio: 1.152028e-01	ci left: 6.772269e-04	ci right 7.606109e-04	k: 1156	n:1610000
CTAG2   1610000 perm   1382 sec   (1165 perm/sec)   p_kst 7.180124e-04   p_cons 3.160683e-01   p_joint 4.221739e-03

Joint ci ratio: 4.728372e-02	ci left: 4.124782e-03	ci right 4.325145e-03	k: 6843	n:1620000
Cons ci ratio: 4.530804e-03	ci left: 3.153211e-01	ci right 3.167536e-01	k: 511980	n:1620000
KS ci ratio: 1.146589e-01	ci left: 6.796414e-04	ci right 7.629009e-04	k: 1167	n:1620000
CTAG2   1620000 perm   1397 sec   (1160 perm/sec)   p_kst 7.203704e-04   p_cons 3.160370e-01   p_joint 4.224074e-03

Joint ci ratio: 4.804455e-02	ci left: 3.969745e-03	ci right 4.165766e-03	k: 6629	n:1630000
Cons ci ratio: 4.516995e-03	ci left: 3.153127e-01	ci right 3.167407e-01	k: 515123	n:1630000
KS ci ratio: 1.142682e-01	ci left: 6.802393e-04	ci right 7.632690e-04	k: 1175	n:1630000
CTAG2   1630000 perm   1413 sec   (1154 perm/sec)   p_kst 7.208589e-04   p_cons 3.160264e-01   p_joint 4.066871e-03

Joint ci ratio: 4.792193e-02	ci left: 3.966022e-03	ci right 4.161345e-03	k: 6663	n:1640000
Cons ci ratio: 4.503516e-03	ci left: 3.152848e-01	ci right 3.167085e-01	k: 518234	n:1640000
KS ci ratio: 1.139779e-01	ci left: 6.796456e-04	ci right 7.623778e-04	k: 1181	n:1640000
CTAG2   1640000 perm   1429 sec   (1148 perm/sec)   p_kst 7.201220e-04   p_cons 3.159963e-01   p_joint 4.062805e-03

Joint ci ratio: 4.798401e-02	ci left: 3.931805e-03	ci right 4.125700e-03	k: 6646	n:1650000
Cons ci ratio: 4.489747e-03	ci left: 3.152967e-01	ci right 3.167161e-01	k: 521410	n:1650000
KS ci ratio: 1.133560e-01	ci left: 6.831814e-04	ci right 7.658600e-04	k: 1194	n:1650000
CTAG2   1650000 perm   1444 sec   (1142 perm/sec)   p_kst 7.236364e-04   p_cons 3.160061e-01   p_joint 4.027879e-03

Joint ci ratio: 4.794117e-02	ci left: 3.915261e-03	ci right 4.108163e-03	k: 6658	n:1660000
Cons ci ratio: 4.476547e-03	ci left: 3.152657e-01	ci right 3.166807e-01	k: 524515	n:1660000
KS ci ratio: 1.129785e-01	ci left: 6.837487e-04	ci right 7.662020e-04	k: 1202	n:1660000
CTAG2   1660000 perm   1460 sec   (1137 perm/sec)   p_kst 7.240964e-04   p_cons 3.159729e-01   p_joint 4.010843e-03

Joint ci ratio: 4.828142e-02	ci left: 3.836793e-03	ci right 4.027209e-03	k: 6565	n:1670000
Cons ci ratio: 4.463067e-03	ci left: 3.152734e-01	ci right 3.166842e-01	k: 527684	n:1670000
KS ci ratio: 1.128380e-01	ci left: 6.814001e-04	ci right 7.634611e-04	k: 1205	n:1670000
CTAG2   1670000 perm   1476 sec   (1131 perm/sec)   p_kst 7.215569e-04   p_cons 3.159784e-01   p_joint 3.931138e-03

Joint ci ratio: 4.870075e-02	ci left: 3.748093e-03	ci right 3.935767e-03	k: 6453	n:1680000
Cons ci ratio: 4.449953e-03	ci left: 3.152571e-01	ci right 3.166637e-01	k: 530813	n:1680000
KS ci ratio: 1.123268e-01	ci left: 6.837074e-04	ci right 7.656486e-04	k: 1216	n:1680000
CTAG2   1680000 perm   1492 sec   (1126 perm/sec)   p_kst 7.238095e-04   p_cons 3.159601e-01   p_joint 3.841071e-03

Joint ci ratio: 4.853176e-02	ci left: 3.752219e-03	ci right 3.939429e-03	k: 6498	n:1690000
Cons ci ratio: 4.437026e-03	ci left: 3.152340e-01	ci right 3.166364e-01	k: 533930	n:1690000
KS ci ratio: 1.118680e-01	ci left: 6.854131e-04	ci right 7.672011e-04	k: 1226	n:1690000
CTAG2   1690000 perm   1508 sec   (1120 perm/sec)   p_kst 7.254438e-04   p_cons 3.159349e-01   p_joint 3.844970e-03

Joint ci ratio: 4.843142e-02	ci left: 3.745836e-03	ci right 3.932331e-03	k: 6525	n:1700000
Cons ci ratio: 4.424044e-03	ci left: 3.152277e-01	ci right 3.166259e-01	k: 537075	n:1700000
KS ci ratio: 1.115503e-01	ci left: 6.853838e-04	ci right 7.669208e-04	k: 1233	n:1700000
CTAG2   1700000 perm   1524 sec   (1115 perm/sec)   p_kst 7.252941e-04   p_cons 3.159265e-01   p_joint 3.838235e-03

Joint ci ratio: 4.829103e-02	ci left: 3.745884e-03	ci right 3.931826e-03	k: 6563	n:1710000
Cons ci ratio: 4.411437e-03	ci left: 3.151957e-01	ci right 3.165898e-01	k: 540176	n:1710000
KS ci ratio: 1.113700e-01	ci left: 6.836497e-04	ci right 7.648403e-04	k: 1237	n:1710000
CTAG2   1710000 perm   1541 sec   (1110 perm/sec)   p_kst 7.233918e-04   p_cons 3.158924e-01   p_joint 3.838012e-03

Joint ci ratio: 4.812991e-02	ci left: 3.749379e-03	ci right 3.934856e-03	k: 6607	n:1720000
Cons ci ratio: 4.398203e-03	ci left: 3.152361e-01	ci right 3.166262e-01	k: 543401	n:1720000
KS ci ratio: 1.110119e-01	ci left: 6.841968e-04	ci right 7.651740e-04	k: 1245	n:1720000
CTAG2   1720000 perm   1557 sec   (1104 perm/sec)   p_kst 7.238372e-04   p_cons 3.159308e-01   p_joint 3.841279e-03

Joint ci ratio: 4.857896e-02	ci left: 3.658606e-03	ci right 3.841328e-03	k: 6486	n:1730000
Cons ci ratio: 4.385422e-03	ci left: 3.152431e-01	ci right 3.166292e-01	k: 546569	n:1730000
KS ci ratio: 1.106131e-01	ci left: 6.853001e-04	ci right 7.660974e-04	k: 1254	n:1730000
CTAG2   1730000 perm   1573 sec   (1099 perm/sec)   p_kst 7.248555e-04   p_cons 3.159358e-01   p_joint 3.749133e-03

Joint ci ratio: 4.843729e-02	ci left: 3.659153e-03	ci right 3.841355e-03	k: 6524	n:1740000
Cons ci ratio: 4.372979e-03	ci left: 3.152277e-01	ci right 3.166097e-01	k: 549698	n:1740000
KS ci ratio: 1.102185e-01	ci left: 6.863911e-04	ci right 7.670097e-04	k: 1263	n:1740000
CTAG2   1740000 perm   1590 sec   (1095 perm/sec)   p_kst 7.258621e-04   p_cons 3.159184e-01   p_joint 3.749425e-03

Joint ci ratio: 4.833013e-02	ci left: 3.654615e-03	ci right 3.836177e-03	k: 6553	n:1750000
Cons ci ratio: 4.360612e-03	ci left: 3.152153e-01	ci right 3.165933e-01	k: 552832	n:1750000
KS ci ratio: 1.100012e-01	ci left: 6.852473e-04	ci right 7.655627e-04	k: 1268	n:1750000
CTAG2   1750000 perm   1606 sec   (1090 perm/sec)   p_kst 7.245714e-04   p_cons 3.159040e-01   p_joint 3.744571e-03

Joint ci ratio: 4.820897e-02	ci left: 3.652373e-03	ci right 3.833357e-03	k: 6586	n:1760000
Cons ci ratio: 4.348126e-03	ci left: 3.152252e-01	ci right 3.165993e-01	k: 556005	n:1760000
KS ci ratio: 1.096991e-01	ci left: 6.852219e-04	ci right 7.652994e-04	k: 1275	n:1760000
CTAG2   1760000 perm   1623 sec   (1085 perm/sec)   p_kst 7.244318e-04   p_cons 3.159119e-01   p_joint 3.742045e-03

Joint ci ratio: 4.807051e-02	ci left: 3.652949e-03	ci right 3.833426e-03	k: 6624	n:1770000
Cons ci ratio: 4.335878e-03	ci left: 3.152219e-01	ci right 3.165922e-01	k: 559155	n:1770000
KS ci ratio: 1.092717e-01	ci left: 6.868456e-04	ci right 7.667800e-04	k: 1285	n:1770000
CTAG2   1770000 perm   1639 sec   (1080 perm/sec)   p_kst 7.259887e-04   p_cons 3.159068e-01   p_joint 3.742373e-03

Joint ci ratio: 4.790797e-02	ci left: 3.657405e-03	ci right 3.837474e-03	k: 6669	n:1780000
Cons ci ratio: 4.323434e-03	ci left: 3.152485e-01	ci right 3.166150e-01	k: 562358	n:1780000
KS ci ratio: 1.091022e-01	ci left: 6.851727e-04	ci right 7.647808e-04	k: 1289	n:1780000
CTAG2   1780000 perm   1656 sec   (1075 perm/sec)   p_kst 7.241573e-04   p_cons 3.159315e-01   p_joint 3.746629e-03

Joint ci ratio: 4.778638e-02	ci left: 3.655739e-03	ci right 3.835258e-03	k: 6703	n:1790000
Cons ci ratio: 4.311070e-03	ci left: 3.152776e-01	ci right 3.166403e-01	k: 565566	n:1790000
KS ci ratio: 1.086817e-01	ci left: 6.867794e-04	ci right 7.662469e-04	k: 1299	n:1790000
CTAG2   1790000 perm   1672 sec   (1070 perm/sec)   p_kst 7.256983e-04   p_cons 3.159587e-01   p_joint 3.744693e-03

Joint ci ratio: 4.801023e-02	ci left: 3.601395e-03	ci right 3.779096e-03	k: 6641	n:1800000
Cons ci ratio: 4.298667e-03	ci left: 3.153208e-01	ci right 3.166798e-01	k: 568800	n:1800000
KS ci ratio: 1.083488e-01	ci left: 6.872878e-04	ci right 7.665550e-04	k: 1307	n:1800000
CTAG2   1800000 perm   1689 sec   (1066 perm/sec)   p_kst 7.261111e-04   p_cons 3.160000e-01   p_joint 3.689444e-03

Joint ci ratio: 4.785908e-02	ci left: 3.604425e-03	ci right 3.781700e-03	k: 6683	n:1810000
Cons ci ratio: 4.286595e-03	ci left: 3.153409e-01	ci right 3.166961e-01	k: 571993	n:1810000
KS ci ratio: 1.080190e-01	ci left: 6.877909e-04	ci right 7.668593e-04	k: 1315	n:1810000
CTAG2   1810000 perm   1706 sec   (1061 perm/sec)   p_kst 7.265193e-04   p_cons 3.160182e-01   p_joint 3.692265e-03

Joint ci ratio: 4.772360e-02	ci left: 3.605250e-03	ci right 3.782050e-03	k: 6721	n:1820000
Cons ci ratio: 4.274971e-03	ci left: 3.153257e-01	ci right 3.166771e-01	k: 575122	n:1820000
KS ci ratio: 1.078553e-01	ci left: 6.861503e-04	ci right 7.649030e-04	k: 1319	n:1820000
CTAG2   1820000 perm   1723 sec   (1056 perm/sec)   p_kst 7.247253e-04   p_cons 3.160011e-01   p_joint 3.692857e-03

Joint ci ratio: 4.759280e-02	ci left: 3.605527e-03	ci right 3.781842e-03	k: 6758	n:1830000
Cons ci ratio: 4.263216e-03	ci left: 3.153335e-01	ci right 3.166813e-01	k: 578293	n:1830000
KS ci ratio: 1.074086e-01	ci left: 6.882500e-04	ci right 7.668958e-04	k: 1330	n:1830000
CTAG2   1830000 perm   1741 sec   (1051 perm/sec)   p_kst 7.267760e-04   p_cons 3.160071e-01   p_joint 3.692896e-03

Joint ci ratio: 4.740708e-02	ci left: 3.614394e-03	ci right 3.790435e-03	k: 6811	n:1840000
Cons ci ratio: 4.251707e-03	ci left: 3.153261e-01	ci right 3.166701e-01	k: 581436	n:1840000
KS ci ratio: 1.069674e-01	ci left: 6.903275e-04	ci right 7.688663e-04	k: 1341	n:1840000
CTAG2   1840000 perm   1758 sec   (1047 perm/sec)   p_kst 7.288043e-04   p_cons 3.159978e-01   p_joint 3.701630e-03

Joint ci ratio: 4.772503e-02	ci left: 3.546784e-03	ci right 3.720722e-03	k: 6721	n:1850000
Cons ci ratio: 4.240465e-03	ci left: 3.153009e-01	ci right 3.166413e-01	k: 584546	n:1850000
KS ci ratio: 1.067291e-01	ci left: 6.897526e-04	ci right 7.680402e-04	k: 1347	n:1850000
CTAG2   1850000 perm   1775 sec   (1042 perm/sec)   p_kst 7.281081e-04   p_cons 3.159708e-01   p_joint 3.632973e-03

Joint ci ratio: 4.761897e-02	ci left: 3.543652e-03	ci right 3.717039e-03	k: 6751	n:1860000
Cons ci ratio: 4.228918e-03	ci left: 3.153163e-01	ci right 3.166531e-01	k: 587731	n:1860000
KS ci ratio: 1.064924e-01	ci left: 6.891840e-04	ci right 7.672227e-04	k: 1353	n:1860000
CTAG2   1860000 perm   1793 sec   (1037 perm/sec)   p_kst 7.274194e-04   p_cons 3.159844e-01   p_joint 3.629570e-03

Joint ci ratio: 4.768327e-02	ci left: 3.515189e-03	ci right 3.687423e-03	k: 6733	n:1870000
Cons ci ratio: 4.217302e-03	ci left: 3.153481e-01	ci right 3.166813e-01	k: 590947	n:1870000
KS ci ratio: 1.061401e-01	ci left: 6.901834e-04	ci right 7.680607e-04	k: 1362	n:1870000
CTAG2   1870000 perm   1811 sec   (1033 perm/sec)   p_kst 7.283422e-04   p_cons 3.160144e-01   p_joint 3.600535e-03

Joint ci ratio: 4.794524e-02	ci left: 3.458124e-03	ci right 3.628518e-03	k: 6660	n:1880000
Cons ci ratio: 4.206253e-03	ci left: 3.153312e-01	ci right 3.166609e-01	k: 594072	n:1880000
KS ci ratio: 1.059461e-01	ci left: 6.891013e-04	ci right 7.667054e-04	k: 1367	n:1880000
CTAG2   1880000 perm   1828 sec   (1028 perm/sec)   p_kst 7.271277e-04   p_cons 3.159957e-01   p_joint 3.542553e-03

Joint ci ratio: 4.798547e-02	ci left: 3.434075e-03	ci right 3.603430e-03	k: 6649	n:1890000
Cons ci ratio: 4.194982e-03	ci left: 3.153462e-01	ci right 3.166724e-01	k: 597257	n:1890000
KS ci ratio: 1.057145e-01	ci left: 6.885458e-04	ci right 7.659073e-04	k: 1373	n:1890000
CTAG2   1890000 perm   1845 sec   (1024 perm/sec)   p_kst 7.264550e-04   p_cons 3.160090e-01   p_joint 3.517989e-03

Joint ci ratio: 4.783456e-02	ci left: 3.437842e-03	ci right 3.606835e-03	k: 6691	n:1900000
Cons ci ratio: 4.184061e-03	ci left: 3.153342e-01	ci right 3.166569e-01	k: 600391	n:1900000
KS ci ratio: 1.054845e-01	ci left: 6.879963e-04	ci right 7.651175e-04	k: 1379	n:1900000
CTAG2   1900000 perm   1863 sec   (1020 perm/sec)   p_kst 7.257895e-04   p_cons 3.159953e-01   p_joint 3.521579e-03

Joint ci ratio: 4.770997e-02	ci left: 3.437948e-03	ci right 3.606494e-03	k: 6726	n:1910000
Cons ci ratio: 4.173083e-03	ci left: 3.153370e-01	ci right 3.166562e-01	k: 603553	n:1910000
KS ci ratio: 1.051800e-01	ci left: 6.884724e-04	ci right 7.654105e-04	k: 1387	n:1910000
CTAG2   1910000 perm   1881 sec   (1016 perm/sec)   p_kst 7.261780e-04   p_cons 3.159963e-01   p_joint 3.521466e-03

Joint ci ratio: 4.762168e-02	ci left: 3.432908e-03	ci right 3.600887e-03	k: 6751	n:1920000
Cons ci ratio: 4.161760e-03	ci left: 3.153846e-01	ci right 3.167004e-01	k: 606801	n:1920000
KS ci ratio: 1.049158e-01	ci left: 6.884367e-04	ci right 7.651655e-04	k: 1394	n:1920000
CTAG2   1920000 perm   1899 sec   (1011 perm/sec)   p_kst 7.260417e-04   p_cons 3.160422e-01   p_joint 3.516146e-03

Joint ci ratio: 4.748470e-02	ci left: 3.435088e-03	ci right 3.602677e-03	k: 6790	n:1930000
Cons ci ratio: 4.151096e-03	ci left: 3.153726e-01	ci right 3.166850e-01	k: 609935	n:1930000
KS ci ratio: 1.046536e-01	ci left: 6.884015e-04	ci right 7.649229e-04	k: 1401	n:1930000
CTAG2   1930000 perm   1916 sec   (1007 perm/sec)   p_kst 7.259067e-04   p_cons 3.160285e-01   p_joint 3.518135e-03

Joint ci ratio: 4.754136e-02	ci left: 3.409231e-03	ci right 3.575762e-03	k: 6774	n:1940000
Cons ci ratio: 4.140138e-03	ci left: 3.153999e-01	ci right 3.167089e-01	k: 613145	n:1940000
KS ci ratio: 1.045419e-01	ci left: 6.863590e-04	ci right 7.625669e-04	k: 1404	n:1940000
CTAG2   1940000 perm   1934 sec   (1003 perm/sec)   p_kst 7.237113e-04   p_cons 3.160541e-01   p_joint 3.491753e-03

Joint ci ratio: 4.700524e-02	ci left: 3.470298e-03	ci right 3.637849e-03	k: 6929	n:1950000
Cons ci ratio: 4.129227e-03	ci left: 3.154310e-01	ci right 3.167367e-01	k: 616363	n:1950000
KS ci ratio: 1.042825e-01	ci left: 6.863352e-04	ci right 7.623397e-04	k: 1411	n:1950000
CTAG2   1950000 perm   1953 sec   (999 perm/sec)   p_kst 7.235897e-04   p_cons 3.160836e-01   p_joint 3.553333e-03

Joint ci ratio: 4.726648e-02	ci left: 3.414271e-03	ci right 3.580058e-03	k: 6853	n:1960000
Cons ci ratio: 4.118796e-03	ci left: 3.154205e-01	ci right 3.167229e-01	k: 619500	n:1960000
KS ci ratio: 1.039517e-01	ci left: 6.873058e-04	ci right 7.631616e-04	k: 1420	n:1960000
CTAG2   1960000 perm   1971 sec   (994 perm/sec)   p_kst 7.244898e-04   p_cons 3.160714e-01   p_joint 3.496429e-03

Joint ci ratio: 4.716343e-02	ci left: 3.411989e-03	ci right 3.577294e-03	k: 6883	n:1970000
Cons ci ratio: 4.107893e-03	ci left: 3.154680e-01	ci right 3.167671e-01	k: 622751	n:1970000
KS ci ratio: 1.037329e-01	ci left: 6.867835e-04	ci right 7.624124e-04	k: 1426	n:1970000
CTAG2   1970000 perm   1989 sec   (990 perm/sec)   p_kst 7.238579e-04   p_cons 3.161173e-01   p_joint 3.493909e-03

Joint ci ratio: 4.704740e-02	ci left: 3.411726e-03	ci right 3.576600e-03	k: 6917	n:1980000
Cons ci ratio: 4.097689e-03	ci left: 3.154504e-01	ci right 3.167461e-01	k: 625874	n:1980000
KS ci ratio: 1.035156e-01	ci left: 6.862666e-04	ci right 7.616707e-04	k: 1432	n:1980000
CTAG2   1980000 perm   2007 sec   (986 perm/sec)   p_kst 7.232323e-04   p_cons 3.160980e-01   p_joint 3.493434e-03

Joint ci ratio: 4.693900e-02	ci left: 3.410473e-03	ci right 3.574897e-03	k: 6949	n:1990000
Cons ci ratio: 4.087409e-03	ci left: 3.154490e-01	ci right 3.167415e-01	k: 629029	n:1990000
KS ci ratio: 1.032996e-01	ci left: 6.857551e-04	ci right 7.609362e-04	k: 1438	n:1990000
CTAG2   1990000 perm   2026 sec   (982 perm/sec)   p_kst 7.226131e-04   p_cons 3.160950e-01   p_joint 3.491960e-03

Joint ci ratio: 4.681117e-02	ci left: 3.412198e-03	ci right 3.576245e-03	k: 6987	n:2000000
Cons ci ratio: 4.077159e-03	ci left: 3.154526e-01	ci right 3.167419e-01	k: 632194	n:2000000
KS ci ratio: 1.029780e-01	ci left: 6.867103e-04	ci right 7.617476e-04	k: 1447	n:2000000
CTAG2   2000000 perm   2044 sec   (978 perm/sec)   p_kst 7.235000e-04   p_cons 3.160970e-01   p_joint 3.493500e-03

Joint ci ratio: 4.656812e-02	ci left: 3.431117e-03	ci right 3.595194e-03	k: 7060	n:2010000
Cons ci ratio: 4.066887e-03	ci left: 3.154667e-01	ci right 3.167527e-01	k: 635380	n:2010000
KS ci ratio: 1.026242e-01	ci left: 6.881411e-04	ci right 7.630608e-04	k: 1457	n:2010000
CTAG2   2010000 perm   2063 sec   (974 perm/sec)   p_kst 7.248756e-04   p_cons 3.161095e-01   p_joint 3.512438e-03

Joint ci ratio: 4.644000e-02	ci left: 3.433214e-03	ci right 3.596928e-03	k: 7099	n:2020000
Cons ci ratio: 4.056808e-03	ci left: 3.154682e-01	ci right 3.167511e-01	k: 638541	n:2020000
KS ci ratio: 1.023787e-01	ci left: 6.881109e-04	ci right 7.628374e-04	k: 1464	n:2020000
CTAG2   2020000 perm   2082 sec   (970 perm/sec)   p_kst 7.247525e-04   p_cons 3.161094e-01   p_joint 3.514356e-03

Joint ci ratio: 4.630642e-02	ci left: 3.436264e-03	ci right 3.599640e-03	k: 7140	n:2030000
Cons ci ratio: 4.046837e-03	ci left: 3.154663e-01	ci right 3.167460e-01	k: 641695	n:2030000
KS ci ratio: 1.019618e-01	ci left: 6.904816e-04	ci right 7.651418e-04	k: 1476	n:2030000
CTAG2   2030000 perm   2101 sec   (966 perm/sec)   p_kst 7.270936e-04   p_cons 3.161059e-01   p_joint 3.517241e-03

Joint ci ratio: 4.601353e-02	ci left: 3.463514e-03	ci right 3.627116e-03	k: 7231	n:2040000
Cons ci ratio: 4.036883e-03	ci left: 3.154703e-01	ci right 3.167469e-01	k: 644861	n:2040000
KS ci ratio: 1.015842e-01	ci left: 6.923518e-04	ci right 7.669205e-04	k: 1487	n:2040000
CTAG2   2040000 perm   2119 sec   (963 perm/sec)   p_kst 7.289216e-04   p_cons 3.161083e-01   p_joint 3.544608e-03

Joint ci ratio: 4.589943e-02	ci left: 3.463978e-03	ci right 3.627185e-03	k: 7267	n:2050000
Cons ci ratio: 4.027125e-03	ci left: 3.154611e-01	ci right 3.167345e-01	k: 648000	n:2050000
KS ci ratio: 1.014480e-01	ci left: 6.908761e-04	ci right 7.651802e-04	k: 1491	n:2050000
CTAG2   2050000 perm   2138 sec   (959 perm/sec)   p_kst 7.273171e-04   p_cons 3.160976e-01   p_joint 3.544878e-03

Joint ci ratio: 4.580820e-02	ci left: 3.461079e-03	ci right 3.623817e-03	k: 7296	n:2060000
Cons ci ratio: 4.017100e-03	ci left: 3.154884e-01	ci right 3.167587e-01	k: 651214	n:2060000
KS ci ratio: 1.012109e-01	ci left: 6.908343e-04	ci right 7.649498e-04	k: 1498	n:2060000
CTAG2   2060000 perm   2157 sec   (955 perm/sec)   p_kst 7.271845e-04   p_cons 3.161233e-01   p_joint 3.541748e-03

Joint ci ratio: 4.586224e-02	ci left: 3.436239e-03	ci right 3.598005e-03	k: 7279	n:2070000
Cons ci ratio: 4.007310e-03	ci left: 3.154980e-01	ci right 3.167653e-01	k: 654392	n:2070000
KS ci ratio: 1.009754e-01	ci left: 6.907931e-04	ci right 7.647215e-04	k: 1505	n:2070000
CTAG2   2070000 perm   2176 sec   (951 perm/sec)   p_kst 7.270531e-04   p_cons 3.161314e-01   p_joint 3.516425e-03

Joint ci ratio: 4.578381e-02	ci left: 3.431600e-03	ci right 3.592864e-03	k: 7304	n:2080000
Cons ci ratio: 3.997791e-03	ci left: 3.154859e-01	ci right 3.167502e-01	k: 657525	n:2080000
KS ci ratio: 1.008416e-01	ci left: 6.893465e-04	ci right 7.630166e-04	k: 1509	n:2080000
CTAG2   2080000 perm   2196 sec   (947 perm/sec)   p_kst 7.254808e-04   p_cons 3.161178e-01   p_joint 3.511538e-03

Joint ci ratio: 4.565268e-02	ci left: 3.435047e-03	ci right 3.595999e-03	k: 7346	n:2090000
Cons ci ratio: 3.988013e-03	ci left: 3.155094e-01	ci right 3.167706e-01	k: 660732	n:2090000
KS ci ratio: 1.005755e-01	ci left: 6.897795e-04	ci right 7.632899e-04	k: 1517	n:2090000
CTAG2   2090000 perm   2215 sec   (944 perm/sec)   p_kst 7.258373e-04   p_cons 3.161397e-01   p_joint 3.514833e-03

Joint ci ratio: 4.515013e-02	ci left: 3.495901e-03	ci right 3.657854e-03	k: 7510	n:2100000
Cons ci ratio: 3.978294e-03	ci left: 3.155340e-01	ci right 3.167922e-01	k: 663942	n:2100000
KS ci ratio: 1.003115e-01	ci left: 6.902087e-04	ci right 7.635604e-04	k: 1525	n:2100000
CTAG2   2100000 perm   2235 sec   (940 perm/sec)   p_kst 7.261905e-04   p_cons 3.161629e-01   p_joint 3.576190e-03

Joint ci ratio: 4.561296e-02	ci left: 3.408577e-03	ci right 3.568146e-03	k: 7359	n:2110000
Cons ci ratio: 3.968971e-03	ci left: 3.155229e-01	ci right 3.167781e-01	k: 667077	n:2110000
KS ci ratio: 1.001149e-01	ci left: 6.897099e-04	ci right 7.628565e-04	k: 1531	n:2110000
CTAG2   2110000 perm   2255 sec   (936 perm/sec)   p_kst 7.255924e-04   p_cons 3.161502e-01   p_joint 3.487678e-03

Joint ci ratio: 4.409408e-02	ci left: 3.632243e-03	ci right 3.796476e-03	k: 7873	n:2120000
Cons ci ratio: 3.959956e-03	ci left: 3.154855e-01	ci right 3.167377e-01	k: 670156	n:2120000
KS ci ratio: 9.972502e-02	ci left: 6.919755e-04	ci right 7.650599e-04	k: 1543	n:2120000
CTAG2   2120000 perm   2275 sec   (932 perm/sec)   p_kst 7.278302e-04   p_cons 3.161113e-01   p_joint 3.713679e-03

Outputting figure to mutsig2_images.part000000000044/CTAG2.3_780_2120000_0.00072783_0.31611_0.0037137.png
                gene_name: CTAG2
               theta_stop: 0.100 
                    nperm: 2120000 
                     p_ks: 0.00073 
        ci_ks_bounds_left: 0.00069 
       ci_ks_bounds_right: 0.00077 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.0037 
     ci_joint_bounds_left: 0.0036 
    ci_joint_bounds_right: 0.0038 

Current progress: 55 percent done.
CTDP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.563971e-02	ci left: 5.375817e-01	ci right 5.571907e-01	k: 5474	n:10000
Cons ci ratio: 6.898055e-02	ci left: 2.356076e-01	ci right 2.525417e-01	k: 2440	n:10000
KS ci ratio: 3.722914e-02	ci left: 5.158568e-01	ci right 5.355282e-01	k: 5257	n:10000
CTDP1   10000 perm   2 sec   (5455 perm/sec)   p_kst 5.257000e-01   p_cons 2.440000e-01   p_joint 5.474000e-01

Outputting figure to mutsig2_images.part000000000044/CTDP1.3_2938_10000_0.5257_0.244_0.5474.png
                gene_name: CTDP1
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 57 percent done.
CTPS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.152669e-02	ci left: 3.570460e-01	ci right 3.760318e-01	k: 3665	n:10000
Cons ci ratio: 4.686016e-02	ci left: 4.019315e-01	ci right 4.213200e-01	k: 4116	n:10000
KS ci ratio: 6.501604e-02	ci left: 2.578534e-01	ci right 2.752827e-01	k: 2665	n:10000
CTPS   10000 perm   2 sec   (5811 perm/sec)   p_kst 2.665000e-01   p_cons 4.116000e-01   p_joint 3.665000e-01

Outputting figure to mutsig2_images.part000000000044/CTPS.3_1844_10000_0.2665_0.4116_0.3665.png
                gene_name: CTPS
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 60 percent done.
CSGALNACT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.722590e-03	ci left: 9.485639e-01	ci right 9.569698e-01	k: 9529	n:10000
KS ci ratio: 2.177074e-01	ci left: 2.797424e-02	ci right 3.490226e-02	k: 313	n:10000
CSGALNACT1   10000 perm   2 sec   (6307 perm/sec)   p_kst 3.130000e-02   p_cons 9.529000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 5.935230e-03	ci left: 9.532717e-01	ci right 9.589947e-01	k: 19124	n:20000
KS ci ratio: 1.536935e-01	ci left: 2.907449e-02	ci right 3.396297e-02	k: 629	n:20000
CSGALNACT1   20000 perm   4 sec   (5480 perm/sec)   p_kst 3.145000e-02   p_cons 9.562000e-01   p_joint 1

Joint ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
Cons ci ratio: 4.798911e-03	ci left: 9.546432e-01	ci right 9.592678e-01	k: 28710	n:30000
KS ci ratio: 1.286161e-01	ci left: 2.809861e-02	ci right 3.199310e-02	k: 900	n:30000
CSGALNACT1   30000 perm   6 sec   (5220 perm/sec)   p_kst 3.000000e-02   p_cons 9.570000e-01   p_joint 1

Joint ci ratio: 9.799510e-05	ci left: 9.999078e-01	ci right 1	k: 40000	n:40000
Cons ci ratio: 4.217090e-03	ci left: 9.537144e-01	ci right 9.577691e-01	k: 38231	n:40000
KS ci ratio: 1.113057e-01	ci left: 2.839861e-02	ci right 3.177007e-02	k: 1202	n:40000
CSGALNACT1   40000 perm   8 sec   (5041 perm/sec)   p_kst 3.005000e-02   p_cons 9.557750e-01   p_joint 1

Joint ci ratio: 7.839686e-05	ci left: 9.999262e-01	ci right 1	k: 50000	n:50000
Cons ci ratio: 3.797277e-03	ci left: 9.533502e-01	ci right 9.569967e-01	k: 47760	n:50000
KS ci ratio: 9.941030e-02	ci left: 2.865872e-02	ci right 3.167616e-02	k: 1507	n:50000
CSGALNACT1   50000 perm   10 sec   (4906 perm/sec)   p_kst 3.014000e-02   p_cons 9.552000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000044/CSGALNACT1.2_1627_50000_0.03014_0.9552_1.png
                gene_name: CSGALNACT1
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.030 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
CSHL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.636081e-02	ci left: 4.071122e-01	ci right 4.265363e-01	k: 4168	n:10000
Cons ci ratio: 5.711691e-02	ci left: 3.109600e-01	ci right 3.293449e-01	k: 3201	n:10000
KS ci ratio: 2.233612e-02	ci left: 7.463458e-01	ci right 7.633055e-01	k: 7549	n:10000
CSHL1   10000 perm   1 sec   (6884 perm/sec)   p_kst 7.549000e-01   p_cons 3.201000e-01   p_joint 4.168000e-01

Outputting figure to mutsig2_images.part000000000044/CSHL1.2_689_10000_0.7549_0.3201_0.4168.png
                gene_name: CSHL1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 64 percent done.
CSNK1A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.005892e-02	ci left: 7.844174e-01	ci right 8.004119e-01	k: 7925	n:10000
KS ci ratio: 1.481229e-02	ci left: 8.684609e-01	ci right 8.815198e-01	k: 8751	n:10000
CSNK1A1   10000 perm   2 sec   (6655 perm/sec)   p_kst 8.751000e-01   p_cons 7.925000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000044/CSNK1A1.2_1142_10000_0.8751_0.7925_1.png
                gene_name: CSNK1A1
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 66 percent done.
CSNK1D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.755268e-02	ci left: 3.076861e-01	ci right 3.260207e-01	k: 3168	n:10000
Cons ci ratio: 1.733853e-02	ci left: 8.290021e-01	ci right 8.436014e-01	k: 8364	n:10000
KS ci ratio: 2.079888e-01	ci left: 3.072413e-02	ci right 3.795045e-02	k: 342	n:10000
CSNK1D   10000 perm   1 sec   (6790 perm/sec)   p_kst 3.420000e-02   p_cons 8.364000e-01   p_joint 3.168000e-01

Joint ci ratio: 3.052103e-02	ci left: 4.450350e-01	ci right 4.588790e-01	k: 9039	n:20000
Cons ci ratio: 1.213398e-02	ci left: 8.340347e-01	ci right 8.442665e-01	k: 16784	n:20000
KS ci ratio: 1.444767e-01	ci left: 3.292999e-02	ci right 3.810619e-02	k: 709	n:20000
CSNK1D   20000 perm   3 sec   (5913 perm/sec)   p_kst 3.545000e-02   p_cons 8.392000e-01   p_joint 4.519500e-01

Joint ci ratio: 2.486994e-02	ci left: 4.473219e-01	ci right 4.586205e-01	k: 13589	n:30000
Cons ci ratio: 9.894951e-03	ci left: 8.353305e-01	ci right 8.436703e-01	k: 25186	n:30000
KS ci ratio: 1.164992e-01	ci left: 3.424427e-02	ci right 3.851279e-02	k: 1090	n:30000
CSNK1D   30000 perm   5 sec   (5588 perm/sec)   p_kst 3.633333e-02   p_cons 8.395333e-01   p_joint 4.529667e-01

Joint ci ratio: 2.154337e-02	ci left: 4.479630e-01	ci right 4.577439e-01	k: 18114	n:40000
Cons ci ratio: 8.575035e-03	ci left: 8.357143e-01	ci right 8.429363e-01	k: 33574	n:40000
KS ci ratio: 1.013140e-01	ci left: 3.424442e-02	ci right 3.792333e-02	k: 1442	n:40000
CSNK1D   40000 perm   7 sec   (5369 perm/sec)   p_kst 3.605000e-02   p_cons 8.393500e-01   p_joint 4.528500e-01

Joint ci ratio: 1.927420e-02	ci left: 4.483499e-01	ci right 4.570956e-01	k: 22636	n:50000
Cons ci ratio: 7.674540e-03	ci left: 8.359303e-01	ci right 8.423903e-01	k: 41959	n:50000
KS ci ratio: 9.061170e-02	ci left: 3.444280e-02	ci right 3.773135e-02	k: 1803	n:50000
CSNK1D   50000 perm   10 sec   (5187 perm/sec)   p_kst 3.606000e-02   p_cons 8.391800e-01   p_joint 4.527200e-01

Outputting figure to mutsig2_images.part000000000044/CSNK1D.2_1321_50000_0.03606_0.83918_0.45272.png
                gene_name: CSNK1D
               theta_stop: 0.091 
                    nperm: 50000 
                     p_ks: 0.036 
        ci_ks_bounds_left: 0.034 
       ci_ks_bounds_right: 0.038 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.46 

Current progress: 68 percent done.
CSNK1G1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.753939e-02	ci left: 3.077853e-01	ci right 3.261214e-01	k: 3169	n:10000
Cons ci ratio: 7.184476e-02	ci left: 2.210904e-01	ci right 2.376675e-01	k: 2293	n:10000
KS ci ratio: 6.016490e-02	ci left: 2.889463e-01	ci right 3.069715e-01	k: 2979	n:10000
CSNK1G1   10000 perm   2 sec   (6505 perm/sec)   p_kst 2.979000e-01   p_cons 2.293000e-01   p_joint 3.169000e-01

Outputting figure to mutsig2_images.part000000000044/CSNK1G1.2_1313_10000_0.2979_0.2293_0.3169.png
                gene_name: CSNK1G1
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 70 percent done.
CSRP2BP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.476599e-02	ci left: 7.057380e-01	ci right 7.235368e-01	k: 7147	n:10000
Cons ci ratio: 4.637988e-02	ci left: 4.069129e-01	ci right 4.263357e-01	k: 4166	n:10000
KS ci ratio: 5.396524e-02	ci left: 3.359772e-01	ci right 3.547130e-01	k: 3453	n:10000
CSRP2BP   10000 perm   2 sec   (6116 perm/sec)   p_kst 3.453000e-01   p_cons 4.166000e-01   p_joint 7.147000e-01

Outputting figure to mutsig2_images.part000000000044/CSRP2BP.2_2389_10000_0.3453_0.4166_0.7147.png
                gene_name: CSRP2BP
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.72 

Current progress: 72 percent done.
CSRP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.677072e-01	ci left: 4.744132e-02	ci right 5.622208e-02	k: 517	n:10000
Cons ci ratio: 1.522044e-01	ci left: 5.744795e-02	ci right 6.700903e-02	k: 621	n:10000
KS ci ratio: 4.007393e-02	ci left: 4.790570e-01	ci right 4.987494e-01	k: 4889	n:10000
CSRP3   10000 perm   1 sec   (7141 perm/sec)   p_kst 4.889000e-01   p_cons 6.210000e-02   p_joint 5.170000e-02

Joint ci ratio: 1.288943e-01	ci left: 4.134441e-02	ci right 4.708905e-02	k: 883	n:20000
Cons ci ratio: 1.060009e-01	ci left: 6.059777e-02	ci right 6.742966e-02	k: 1279	n:20000
KS ci ratio: 2.807354e-02	ci left: 4.866474e-01	ci right 5.005545e-01	k: 9872	n:20000
CSRP3   20000 perm   3 sec   (6140 perm/sec)   p_kst 4.936000e-01   p_cons 6.395000e-02   p_joint 4.415000e-02

Joint ci ratio: 1.064235e-01	ci left: 4.095956e-02	ci right 4.559608e-02	k: 1297	n:30000
Cons ci ratio: 8.686461e-02	ci left: 6.079887e-02	ci right 6.635268e-02	k: 1906	n:30000
KS ci ratio: 2.275050e-02	ci left: 4.916926e-01	ci right 5.030412e-01	k: 14921	n:30000
CSRP3   30000 perm   5 sec   (5776 perm/sec)   p_kst 4.973667e-01   p_cons 6.353333e-02   p_joint 4.323333e-02

Joint ci ratio: 9.127816e-02	ci left: 4.205968e-02	ci right 4.610684e-02	k: 1762	n:40000
Cons ci ratio: 7.425989e-02	ci left: 6.270150e-02	ci right 6.756187e-02	k: 2604	n:40000
KS ci ratio: 1.967585e-02	ci left: 4.931379e-01	ci right 5.029624e-01	k: 19922	n:40000
CSRP3   40000 perm   7 sec   (5537 perm/sec)   p_kst 4.980500e-01   p_cons 6.510000e-02   p_joint 4.405000e-02

Outputting figure to mutsig2_images.part000000000044/CSRP3.2_605_40000_0.49805_0.0651_0.04405.png
                gene_name: CSRP3
               theta_stop: 0.091 
                    nperm: 40000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.065 
      ci_cons_bounds_left: 0.063 
     ci_cons_bounds_right: 0.068 
                  p_joint: 0.044 
     ci_joint_bounds_left: 0.042 
    ci_joint_bounds_right: 0.046 

Current progress: 74 percent done.
CST1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.317620e-02	ci left: 5.728619e-01	ci right 5.922899e-01	k: 5826	n:10000
Cons ci ratio: 4.968114e-02	ci left: 3.740545e-01	ci right 3.932134e-01	k: 3836	n:10000
KS ci ratio: 6.730302e-02	ci left: 2.447000e-01	ci right 2.618439e-01	k: 2532	n:10000
CST1   10000 perm   1 sec   (7209 perm/sec)   p_kst 2.532000e-01   p_cons 3.836000e-01   p_joint 5.826000e-01

Outputting figure to mutsig2_images.part000000000044/CST1.2_438_10000_0.2532_0.3836_0.5826.png
                gene_name: CST1
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 77 percent done.
CST4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.859226e-02	ci left: 3.000492e-01	ci right 3.182621e-01	k: 3091	n:10000
Cons ci ratio: 6.675595e-02	ci left: 2.477650e-01	ci right 2.649772e-01	k: 2563	n:10000
KS ci ratio: 5.104208e-02	ci left: 3.614212e-01	ci right 3.804540e-01	k: 3709	n:10000
CST4   10000 perm   1 sec   (7260 perm/sec)   p_kst 3.709000e-01   p_cons 2.563000e-01   p_joint 3.091000e-01

Outputting figure to mutsig2_images.part000000000044/CST4.2_438_10000_0.3709_0.2563_0.3091.png
                gene_name: CST4
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 79 percent done.
CST5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.463647e-02	ci left: 2.080667e-01	ci right 2.242990e-01	k: 2161	n:10000
Cons ci ratio: 7.808098e-02	ci left: 1.933804e-01	ci right 2.091940e-01	k: 2012	n:10000
KS ci ratio: 3.798239e-02	ci left: 5.058516e-01	ci right 5.255392e-01	k: 5157	n:10000
CST5   10000 perm   1 sec   (7229 perm/sec)   p_kst 5.157000e-01   p_cons 2.012000e-01   p_joint 2.161000e-01

Outputting figure to mutsig2_images.part000000000044/CST5.2_441_10000_0.5157_0.2012_0.2161.png
                gene_name: CST5
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 81 percent done.
CSTF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.010152e-02	ci left: 9.328874e-01	ci right 9.424556e-01	k: 9378	n:10000
Cons ci ratio: 5.914541e-02	ci left: 2.960832e-01	ci right 3.142305e-01	k: 3051	n:10000
KS ci ratio: 2.142425e-02	ci left: 7.616239e-01	ci right 7.782186e-01	k: 7700	n:10000
CSTF2   10000 perm   2 sec   (6202 perm/sec)   p_kst 7.700000e-01   p_cons 3.051000e-01   p_joint 9.378000e-01

Outputting figure to mutsig2_images.part000000000044/CSTF2.2_1786_10000_0.77_0.3051_0.9378.png
                gene_name: CSTF2
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 83 percent done.
CT62
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.548400e-02	ci left: 6.938352e-01	ci right 7.118465e-01	k: 7029	n:10000
Cons ci ratio: 1.681647e-02	ci left: 8.373491e-01	ci right 8.516496e-01	k: 8446	n:10000
KS ci ratio: 9.772196e-02	ci left: 1.317858e-01	ci right 1.454255e-01	k: 1385	n:10000
CT62   10000 perm   1 sec   (7138 perm/sec)   p_kst 1.385000e-01   p_cons 8.446000e-01   p_joint 7.029000e-01

Outputting figure to mutsig2_images.part000000000044/CT62.2_419_10000_0.1385_0.8446_0.7029.png
                gene_name: CT62
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 85 percent done.
CTBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.062909e-02	ci left: 3.652005e-01	ci right 3.842725e-01	k: 3747	n:10000
Cons ci ratio: 6.592598e-02	ci left: 2.525117e-01	ci right 2.698276e-01	k: 2611	n:10000
KS ci ratio: 6.943212e-02	ci left: 2.332365e-01	ci right 2.501142e-01	k: 2416	n:10000
CTBP1   10000 perm   1 sec   (6798 perm/sec)   p_kst 2.416000e-01   p_cons 2.611000e-01   p_joint 3.747000e-01

Outputting figure to mutsig2_images.part000000000044/CTBP1.2_1370_10000_0.2416_0.2611_0.3747.png
                gene_name: CTBP1
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.38 

Current progress: 87 percent done.
CTCFL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.484493e-02	ci left: 7.044263e-01	ci right 7.222493e-01	k: 7134	n:10000
Cons ci ratio: 3.202987e-02	ci left: 5.899187e-01	ci right 6.092232e-01	k: 5996	n:10000
KS ci ratio: 8.843771e-02	ci left: 1.568896e-01	ci right 1.715066e-01	k: 1641	n:10000
CTCFL   10000 perm   2 sec   (6061 perm/sec)   p_kst 1.641000e-01   p_cons 5.996000e-01   p_joint 7.134000e-01

Outputting figure to mutsig2_images.part000000000044/CTCFL.2_2032_10000_0.1641_0.5996_0.7134.png
                gene_name: CTCFL
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 89 percent done.
CTDSP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.966721e-02	ci left: 4.841538e-01	ci right 5.038497e-01	k: 4940	n:10000
Cons ci ratio: 5.473782e-02	ci left: 3.296208e-01	ci right 3.482731e-01	k: 3389	n:10000
KS ci ratio: 5.765918e-02	ci left: 3.068925e-01	ci right 3.252147e-01	k: 3160	n:10000
CTDSP1   10000 perm   2 sec   (6516 perm/sec)   p_kst 3.160000e-01   p_cons 3.389000e-01   p_joint 4.940000e-01

Outputting figure to mutsig2_images.part000000000044/CTDSP1.2_814_10000_0.316_0.3389_0.494.png
                gene_name: CTDSP1
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 91 percent done.
CTDSPL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.549987e-03	ci left: 9.843657e-01	ci right 9.889443e-01	k: 9868	n:10000
Cons ci ratio: 4.779148e-02	ci left: 3.924695e-01	ci right 4.117875e-01	k: 4021	n:10000
KS ci ratio: 4.549987e-03	ci left: 9.843657e-01	ci right 9.889443e-01	k: 9868	n:10000
CTDSPL2   10000 perm   1 sec   (6757 perm/sec)   p_kst 9.868000e-01   p_cons 4.021000e-01   p_joint 9.868000e-01

Outputting figure to mutsig2_images.part000000000044/CTDSPL2.2_1449_10000_0.9868_0.4021_0.9868.png
                gene_name: CTDSPL2
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 94 percent done.
CTNNBL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.838059e-03	ci left: 9.885089e-01	ci right 9.923974e-01	k: 9906	n:10000
Cons ci ratio: 2.569767e-02	ci left: 6.903061e-01	ci right 7.083777e-01	k: 6994	n:10000
KS ci ratio: 1.362230e-02	ci left: 8.860594e-01	ci right 8.983110e-01	k: 8923	n:10000
CTNNBL1   10000 perm   2 sec   (6107 perm/sec)   p_kst 8.923000e-01   p_cons 6.994000e-01   p_joint 9.906000e-01

Outputting figure to mutsig2_images.part000000000044/CTNNBL1.2_1756_10000_0.8923_0.6994_0.9906.png
                gene_name: CTNNBL1
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 96 percent done.
CTPS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.783640e-02	ci left: 8.209666e-01	ci right 8.358415e-01	k: 8285	n:10000
Cons ci ratio: 1.127142e-02	ci left: 9.183224e-01	ci right 9.288293e-01	k: 9237	n:10000
KS ci ratio: 2.800172e-02	ci left: 6.527333e-01	ci right 6.713722e-01	k: 6621	n:10000
CTPS2   10000 perm   2 sec   (6174 perm/sec)   p_kst 6.621000e-01   p_cons 9.237000e-01   p_joint 8.285000e-01

Outputting figure to mutsig2_images.part000000000044/CTPS2.2_1829_10000_0.6621_0.9237_0.8285.png
                gene_name: CTPS2
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 98 percent done.
CTR9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.115807e-02	ci left: 7.660785e-01	ci right 7.825614e-01	k: 7744	n:10000
KS ci ratio: 1.661111e-02	ci left: 8.406084e-01	ci right 8.547884e-01	k: 8478	n:10000
CTR9   10000 perm   2 sec   (5115 perm/sec)   p_kst 8.478000e-01   p_cons 7.744000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000044/CTR9.2_3622_10000_0.8478_0.7744_1.png
                gene_name: CTR9
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000044
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 44 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1547>
Subject: Job 8003989: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1547>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000045> was used as the working directory.
Started at Sun Nov 11 15:05:00 2012
Results reported at Sun Nov 11 15:15:17 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000045.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000045.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 45  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000045.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    704.51 sec.
    Max Memory :      4765 MB
    Max Swap   :      7210 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
45
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 45
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 45: processing genes 3982 - 4071
Calculating significance of each gene.
Using projection method.
3982	CTRL	1
3983	CTSA	2.063715e-01
3984	CTSB	1
3985	CTSC	6.273274e-01
3986	CTSD	5.004959e-01
3987	CTSE	1
3988	CTSF	3.722423e-01
3989	CTSG	1.290246e-01
3990	CTSH	1
3991	CTSK	5.779160e-01
3992	CTSL1	1.771284e-01
3993	CTSL2	5.614925e-01
3994	CTSO	3.318015e-01
3995	CTSS	4.580809e-01
3996	CTSW	4.584171e-01
3997	CTSZ	1.994307e-01
3998	CTTN	9.865714e-02
3999	CTTNBP2	9.578132e-01
4000/18094 4000	CTTNBP2NL	7.330223e-02
4001	CTU2	1
4002	CTXN1	1
4003	CTXN3	1
4004	CUBN	1
4005	CUEDC1	5.877842e-01
4006	CUEDC2	1
4007	CUL1	3.155638e-01
4008	CUL2	1
4009	CUL3	2.725231e-04
4010	CUL4A	1
4011	CUL4B	2.391660e-01
4012	CUL5	3.788299e-01
4013	CUL7	9.991790e-01
4014	CUL9	9.999381e-01
4015	CUTA	4.374568e-01
4016	CUTC	1.808152e-01
4017	CUX1	9.486026e-02
4018	CUX2	1
4019	CUZD1	1
4020	CWC15	1.941228e-02
4021	CWC22	8.694053e-02
4022	CWC25	6.092795e-01
4023	CWC27	6.178050e-01
4024	CWF19L1	1
4025	CWF19L2	7.568310e-01
4026	CWH43	8.230460e-01
4027	CX3CL1	1
4028	CX3CR1	2.192642e-01
4029	CXADR	1
4030	CXCL1	1
4031	CXCL10	1
4032	CXCL11	1
4033	CXCL12	1
4034	CXCL13	1
4035	CXCL14	2.027292e-01
4036	CXCL16	1
4037	CXCL17	1
4038	CXCL2	1
4039	CXCL3	1
4040	CXCL5	6.475112e-02
4041	CXCL6	1
4042	CXCL9	1
4043	CXCR1	1
4044	CXCR2	1
4045	CXCR3	5.572591e-01
4046	CXCR4	1.819427e-01
4047	CXCR5	7.550964e-01
4048	CXCR6	1
4049	CXCR7	3.861662e-01
4050	CXXC1	6.566409e-01
4051	CXXC4	5.086300e-01
4052	CXXC5	1
4053	CXorf1	2.037758e-01
4054	CXorf21	1
4055	CXorf22	2.828679e-01
4056	CXorf23	5.719296e-01
4057	CXorf26	5.190470e-01
4058	CXorf27	1
4059	CXorf36	7.143176e-01
4060	CXorf38	1
4061	CXorf40A	1
4062	CXorf40B	1
4063	CXorf41	5.615195e-01
4064	CXorf48	4.397432e-01
4065	CXorf56	3.944649e-01
4066	CXorf57	5.807327e-01
4067	CXorf58	1
4068	CXorf59	1.255468e-02
4069	CXorf61	4.634683e-02
4070	CXorf65	1.721123e-01
4071	CXorf66	5.707196e-04
Done

Running MutSig 2:
Scatter job 45: processing genes 3982 - 4071
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CUBN
Processing conservation and coverage...
89% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.498665e-02	ci left: 4.217637e-01	ci right 4.412762e-01	k: 4315	n:10000
Cons ci ratio: 4.104834e-02	ci left: 4.670686e-01	ci right 4.867449e-01	k: 4769	n:10000
KS ci ratio: 4.887162e-02	ci left: 3.818169e-01	ci right 4.010464e-01	k: 3914	n:10000
CUBN   10000 perm   5 sec   (2027 perm/sec)   p_kst 3.914000e-01   p_cons 4.769000e-01   p_joint 4.315000e-01

Outputting figure to mutsig2_images.part000000000045/CUBN.38_11140_10000_0.3914_0.4769_0.4315.png
                gene_name: CUBN
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 2 percent done.
CUL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.333015e-02	ci left: 8.902613e-01	ci right 9.023067e-01	k: 8964	n:10000
Cons ci ratio: 2.133959e-02	ci left: 7.630411e-01	ci right 7.796005e-01	k: 7714	n:10000
KS ci ratio: 2.548400e-02	ci left: 6.938352e-01	ci right 7.118465e-01	k: 7029	n:10000
CUL3   10000 perm   2 sec   (4163 perm/sec)   p_kst 7.029000e-01   p_cons 7.714000e-01   p_joint 8.964000e-01

Outputting figure to mutsig2_images.part000000000045/CUL3.12_2371_10000_0.7029_0.7714_0.8964.png
                gene_name: CUL3
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 5 percent done.
CUX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.165621e-01	ci left: 9.564778e-02	ci right 1.075854e-01	k: 1015	n:10000
Cons ci ratio: 1.315918e-01	ci left: 7.611299e-02	ci right 8.693227e-02	k: 814	n:10000
KS ci ratio: 9.842379e-02	ci left: 1.301213e-01	ci right 1.436909e-01	k: 1368	n:10000
CUX1   10000 perm   3 sec   (3305 perm/sec)   p_kst 1.368000e-01   p_cons 8.140000e-02   p_joint 1.015000e-01

Joint ci ratio: 9.546324e-02	ci left: 7.402653e-02	ci right 8.149677e-02	k: 1554	n:20000
Cons ci ratio: 8.889963e-02	ci left: 8.464776e-02	ci right 9.257232e-02	k: 1771	n:20000
KS ci ratio: 6.881312e-02	ci left: 1.347752e-01	ci right 1.444298e-01	k: 2791	n:20000
CUX1   20000 perm   7 sec   (3074 perm/sec)   p_kst 1.395500e-01   p_cons 8.855000e-02   p_joint 7.770000e-02

Outputting figure to mutsig2_images.part000000000045/CUX1.11_5499_20000_0.13955_0.08855_0.0777.png
                gene_name: CUX1
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.089 
      ci_cons_bounds_left: 0.085 
     ci_cons_bounds_right: 0.093 
                  p_joint: 0.078 
     ci_joint_bounds_left: 0.074 
    ci_joint_bounds_right: 0.081 

Current progress: 8 percent done.
CTTNBP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.175301e-01	ci left: 9.418721e-02	ci right 1.060469e-01	k: 1000	n:10000
Cons ci ratio: 8.971560e-02	ci left: 1.530607e-01	ci right 1.675377e-01	k: 1602	n:10000
KS ci ratio: 9.986532e-02	ci left: 1.267935e-01	ci right 1.402208e-01	k: 1334	n:10000
CTTNBP2   10000 perm   3 sec   (3685 perm/sec)   p_kst 1.334000e-01   p_cons 1.602000e-01   p_joint 1.000000e-01

Joint ci ratio: 6.064544e-02	ci left: 1.675337e-01	ci right 1.780616e-01	k: 3455	n:20000
Cons ci ratio: 6.190544e-02	ci left: 1.618052e-01	ci right 1.721918e-01	k: 3339	n:20000
KS ci ratio: 7.280364e-02	ci left: 1.219718e-01	ci right 1.312370e-01	k: 2531	n:20000
CTTNBP2   20000 perm   6 sec   (3382 perm/sec)   p_kst 1.265500e-01   p_cons 1.669500e-01   p_joint 1.727500e-01

Outputting figure to mutsig2_images.part000000000045/CTTNBP2.10_5084_20000_0.12655_0.16695_0.17275.png
                gene_name: CTTNBP2
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 10 percent done.
CWH43
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.294291e-02	ci left: 3.446209e-01	ci right 3.634642e-01	k: 3540	n:10000
Cons ci ratio: 3.677630e-02	ci left: 5.219620e-01	ci right 5.416195e-01	k: 5318	n:10000
KS ci ratio: 7.150104e-02	ci left: 2.227686e-01	ci right 2.393884e-01	k: 2310	n:10000
CWH43   10000 perm   2 sec   (4875 perm/sec)   p_kst 2.310000e-01   p_cons 5.318000e-01   p_joint 3.540000e-01

Outputting figure to mutsig2_images.part000000000045/CWH43.8_2164_10000_0.231_0.5318_0.354.png
                gene_name: CWH43
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 12 percent done.
CUL9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.958900e-02	ci left: 6.274864e-01	ci right 6.464337e-01	k: 6370	n:10000
KS ci ratio: 1.646934e-02	ci left: 8.428497e-01	ci right 8.569458e-01	k: 8500	n:10000
CUL9   10000 perm   3 sec   (3161 perm/sec)   p_kst 8.500000e-01   p_cons 6.370000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000045/CUL9.7_7714_10000_0.85_0.637_1.png
                gene_name: CUL9
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 15 percent done.
CWF19L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.572531e-01	ci left: 5.388306e-02	ci right 6.317620e-02	k: 584	n:10000
Cons ci ratio: 2.664142e-03	ci left: 9.939832e-01	ci right 9.967158e-01	k: 9955	n:10000
KS ci ratio: 2.772291e-01	ci left: 1.688052e-02	ci right 2.240432e-02	k: 195	n:10000
CWF19L2   10000 perm   2 sec   (4860 perm/sec)   p_kst 1.950000e-02   p_cons 9.955000e-01   p_joint 5.840000e-02

Joint ci ratio: 1.262282e-01	ci left: 4.308943e-02	ci right 4.894347e-02	k: 919	n:20000
Cons ci ratio: 1.863384e-03	ci left: 9.945267e-01	ci right 9.964248e-01	k: 19911	n:20000
KS ci ratio: 1.894834e-01	ci left: 1.896235e-02	ci right 2.297861e-02	k: 418	n:20000
CWF19L2   20000 perm   5 sec   (4208 perm/sec)   p_kst 2.090000e-02   p_cons 9.955500e-01   p_joint 4.595000e-02

Joint ci ratio: 7.927103e-02	ci left: 7.237132e-02	ci right 7.837789e-02	k: 2260	n:30000
Cons ci ratio: 1.555110e-03	ci left: 9.944955e-01	ci right 9.960729e-01	k: 29860	n:30000
KS ci ratio: 1.552825e-01	ci left: 1.918287e-02	ci right 2.244419e-02	k: 623	n:30000
CWF19L2   30000 perm   7 sec   (4100 perm/sec)   p_kst 2.076667e-02   p_cons 9.953333e-01   p_joint 7.533333e-02

Joint ci ratio: 7.931545e-02	ci left: 5.526286e-02	ci right 5.985163e-02	k: 2301	n:40000
Cons ci ratio: 1.249792e-03	ci left: 9.953046e-01	ci right 9.965717e-01	k: 39839	n:40000
KS ci ratio: 1.333379e-01	ci left: 1.973812e-02	ci right 2.258199e-02	k: 845	n:40000
CWF19L2   40000 perm   10 sec   (3996 perm/sec)   p_kst 2.112500e-02   p_cons 9.959750e-01   p_joint 5.752500e-02

Joint ci ratio: 7.595161e-02	ci left: 4.865570e-02	ci right 5.251669e-02	k: 2528	n:50000
Cons ci ratio: 1.143892e-03	ci left: 9.951720e-01	ci right 9.963293e-01	k: 49789	n:50000
KS ci ratio: 1.201641e-01	ci left: 1.958637e-02	ci right 2.210969e-02	k: 1041	n:50000
CWF19L2   50000 perm   13 sec   (3864 perm/sec)   p_kst 2.082000e-02   p_cons 9.957800e-01   p_joint 5.056000e-02

Joint ci ratio: 7.253532e-02	ci left: 4.473052e-02	ci right 4.811353e-02	k: 2784	n:60000
Cons ci ratio: 1.030960e-03	ci left: 9.953379e-01	ci right 9.963799e-01	k: 59753	n:60000
KS ci ratio: 1.113146e-01	ci left: 1.912166e-02	ci right 2.139175e-02	k: 1214	n:60000
CWF19L2   60000 perm   16 sec   (3781 perm/sec)   p_kst 2.023333e-02   p_cons 9.958833e-01   p_joint 4.640000e-02

Joint ci ratio: 5.703571e-02	ci left: 6.140847e-02	ci right 6.502784e-02	k: 4424	n:70000
Cons ci ratio: 9.489526e-04	ci left: 9.954285e-01	ci right 9.963868e-01	k: 69715	n:70000
KS ci ratio: 1.025600e-01	ci left: 1.939340e-02	ci right 2.150375e-02	k: 1430	n:70000
CWF19L2   70000 perm   19 sec   (3735 perm/sec)   p_kst 2.042857e-02   p_cons 9.959286e-01   p_joint 6.320000e-02

Joint ci ratio: 5.779610e-02	ci left: 5.280129e-02	ci right 5.595612e-02	k: 4349	n:80000
Cons ci ratio: 8.796463e-04	ci left: 9.955379e-01	ci right 9.964256e-01	k: 79680	n:80000
KS ci ratio: 9.576981e-02	ci left: 1.952923e-02	ci right 2.150575e-02	k: 1640	n:80000
CWF19L2   80000 perm   22 sec   (3688 perm/sec)   p_kst 2.050000e-02   p_cons 9.960000e-01   p_joint 5.436250e-02

Outputting figure to mutsig2_images.part000000000045/CWF19L2.7_2757_80000_0.0205_0.996_0.054363.png
                gene_name: CWF19L2
               theta_stop: 0.096 
                    nperm: 80000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.022 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.054 
     ci_joint_bounds_left: 0.053 
    ci_joint_bounds_right: 0.056 

Current progress: 18 percent done.
CXorf66
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.127142e-02	ci left: 9.183224e-01	ci right 9.288293e-01	k: 9237	n:10000
Cons ci ratio: 1.813050e-02	ci left: 8.161888e-01	ci right 8.312222e-01	k: 8238	n:10000
KS ci ratio: 2.913638e-02	ci left: 6.346251e-01	ci right 6.534909e-01	k: 6441	n:10000
CXorf66   10000 perm   2 sec   (5338 perm/sec)   p_kst 6.441000e-01   p_cons 8.238000e-01   p_joint 9.237000e-01

Outputting figure to mutsig2_images.part000000000045/CXorf66.7_1098_10000_0.6441_0.8238_0.9237.png
                gene_name: CXorf66
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 20 percent done.
CTTNBP2NL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.403689e-02	ci left: 4.322344e-01	ci right 4.517994e-01	k: 4420	n:10000
Cons ci ratio: 3.414745e-02	ci left: 5.587238e-01	ci right 5.782363e-01	k: 5685	n:10000
KS ci ratio: 5.437344e-02	ci left: 3.326001e-01	ci right 3.512920e-01	k: 3419	n:10000
CTTNBP2NL   10000 perm   2 sec   (5481 perm/sec)   p_kst 3.419000e-01   p_cons 5.685000e-01   p_joint 4.420000e-01

Outputting figure to mutsig2_images.part000000000045/CTTNBP2NL.6_1936_10000_0.3419_0.5685_0.442.png
                gene_name: CTTNBP2NL
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 22 percent done.
CWC22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.128566e-01	ci left: 2.930086e-02	ci right 3.637471e-02	k: 327	n:10000
Cons ci ratio: 3.277720e-01	ci left: 1.178961e-02	ci right 1.649967e-02	k: 140	n:10000
KS ci ratio: 2.716280e-01	ci left: 1.762636e-02	ci right 2.325787e-02	k: 203	n:10000
CWC22   10000 perm   2 sec   (4784 perm/sec)   p_kst 2.030000e-02   p_cons 1.400000e-02   p_joint 3.270000e-02

Joint ci ratio: 2.156633e-01	ci left: 1.449598e-02	ci right 1.804667e-02	k: 324	n:20000
Cons ci ratio: 2.305348e-01	ci left: 1.260619e-02	ci right 1.593723e-02	k: 284	n:20000
KS ci ratio: 1.983707e-01	ci left: 1.724818e-02	ci right 2.109342e-02	k: 382	n:20000
CWC22   20000 perm   5 sec   (4191 perm/sec)   p_kst 1.910000e-02   p_cons 1.420000e-02   p_joint 1.620000e-02

Joint ci ratio: 1.469593e-01	ci left: 2.146189e-02	ci right 2.489798e-02	k: 694	n:30000
Cons ci ratio: 1.937065e-01	ci left: 1.216125e-02	ci right 1.480087e-02	k: 403	n:30000
KS ci ratio: 1.623308e-01	ci left: 1.751715e-02	ci right 2.064363e-02	k: 571	n:30000
CWC22   30000 perm   7 sec   (4038 perm/sec)   p_kst 1.903333e-02   p_cons 1.343333e-02   p_joint 2.313333e-02

Joint ci ratio: 1.436538e-01	ci left: 1.696081e-02	ci right 1.960978e-02	k: 730	n:40000
Cons ci ratio: 1.650836e-01	ci left: 1.275159e-02	ci right 1.506977e-02	k: 555	n:40000
KS ci ratio: 1.398990e-01	ci left: 1.790183e-02	ci right 2.061860e-02	k: 769	n:40000
CWC22   40000 perm   10 sec   (3904 perm/sec)   p_kst 1.922500e-02   p_cons 1.387500e-02   p_joint 1.825000e-02

Joint ci ratio: 1.528701e-01	ci left: 1.198699e-02	ci right 1.399014e-02	k: 648	n:50000
Cons ci ratio: 1.488548e-01	ci left: 1.266089e-02	ci right 1.471615e-02	k: 683	n:50000
KS ci ratio: 1.267162e-01	ci left: 1.758877e-02	ci right 1.998756e-02	k: 938	n:50000
CWC22   50000 perm   13 sec   (3793 perm/sec)   p_kst 1.876000e-02   p_cons 1.366000e-02   p_joint 1.296000e-02

Joint ci ratio: 1.405415e-01	ci left: 1.189975e-02	ci right 1.371450e-02	k: 767	n:60000
Cons ci ratio: 1.338178e-01	ci left: 1.315570e-02	ci right 1.505839e-02	k: 845	n:60000
KS ci ratio: 1.149912e-01	ci left: 1.790638e-02	ci right 2.010716e-02	k: 1139	n:60000
CWC22   60000 perm   16 sec   (3685 perm/sec)   p_kst 1.898333e-02   p_cons 1.408333e-02   p_joint 1.278333e-02

Joint ci ratio: 1.285982e-01	ci left: 1.225695e-02	ci right 1.395520e-02	k: 916	n:70000
Cons ci ratio: 1.235111e-01	ci left: 1.330887e-02	ci right 1.507460e-02	k: 992	n:70000
KS ci ratio: 1.063798e-01	ci left: 1.801537e-02	ci right 2.005334e-02	k: 1331	n:70000
CWC22   70000 perm   19 sec   (3627 perm/sec)   p_kst 1.901429e-02   p_cons 1.417143e-02   p_joint 1.308571e-02

Joint ci ratio: 1.299288e-01	ci left: 1.051858e-02	ci right 1.199219e-02	k: 899	n:80000
Cons ci ratio: 1.156820e-01	ci left: 1.333082e-02	ci right 1.497969e-02	k: 1131	n:80000
KS ci ratio: 9.961892e-02	ci left: 1.804078e-02	ci right 1.994433e-02	k: 1518	n:80000
CWC22   80000 perm   22 sec   (3571 perm/sec)   p_kst 1.897500e-02   p_cons 1.413750e-02   p_joint 1.123750e-02

Joint ci ratio: 1.233324e-01	ci left: 1.041498e-02	ci right 1.179458e-02	k: 998	n:90000
Cons ci ratio: 1.095250e-01	ci left: 1.326417e-02	ci right 1.481183e-02	k: 1262	n:90000
KS ci ratio: 9.347313e-02	ci left: 1.827000e-02	ci right 2.007229e-02	k: 1724	n:90000
CWC22   90000 perm   26 sec   (3512 perm/sec)   p_kst 1.915556e-02   p_cons 1.402222e-02   p_joint 1.108889e-02

Joint ci ratio: 1.185799e-01	ci left: 1.016860e-02	ci right 1.146001e-02	k: 1080	n:100000
Cons ci ratio: 1.042189e-01	ci left: 1.322246e-02	ci right 1.468593e-02	k: 1394	n:100000
KS ci ratio: 8.838695e-02	ci left: 1.843670e-02	ci right 2.015134e-02	k: 1928	n:100000
CWC22   100000 perm   29 sec   (3456 perm/sec)   p_kst 1.928000e-02   p_cons 1.394000e-02   p_joint 1.080000e-02

Joint ci ratio: 1.327583e-01	ci left: 7.341333e-03	ci right 8.393954e-03	k: 864	n:110000
Cons ci ratio: 9.971538e-02	ci left: 1.316323e-02	ci right 1.455349e-02	k: 1523	n:110000
KS ci ratio: 8.465895e-02	ci left: 1.830818e-02	ci right 1.993550e-02	k: 2102	n:110000
CWC22   110000 perm   32 sec   (3401 perm/sec)   p_kst 1.910909e-02   p_cons 1.384545e-02   p_joint 7.854545e-03

Joint ci ratio: 1.231950e-01	ci left: 7.850972e-03	ci right 8.889664e-03	k: 1003	n:120000
Cons ci ratio: 9.595558e-02	ci left: 1.305805e-02	ci right 1.438227e-02	k: 1645	n:120000
KS ci ratio: 8.114828e-02	ci left: 1.830036e-02	ci right 1.985633e-02	k: 2288	n:120000
CWC22   120000 perm   36 sec   (3354 perm/sec)   p_kst 1.906667e-02   p_cons 1.370833e-02   p_joint 8.358333e-03

Joint ci ratio: 1.239210e-01	ci left: 7.164892e-03	ci right 8.118805e-03	k: 992	n:130000
Cons ci ratio: 9.211700e-02	ci left: 1.310520e-02	ci right 1.437817e-02	k: 1785	n:130000
KS ci ratio: 7.808926e-02	ci left: 1.827230e-02	ci right 1.976465e-02	k: 2471	n:130000
CWC22   130000 perm   39 sec   (3309 perm/sec)   p_kst 1.900769e-02   p_cons 1.373077e-02   p_joint 7.630769e-03

Joint ci ratio: 1.217517e-01	ci left: 6.902298e-03	ci right 7.804001e-03	k: 1028	n:140000
Cons ci ratio: 8.889243e-02	ci left: 1.309063e-02	ci right 1.431535e-02	k: 1917	n:140000
KS ci ratio: 7.539542e-02	ci left: 1.822816e-02	ci right 1.966329e-02	k: 2651	n:140000
CWC22   140000 perm   43 sec   (3252 perm/sec)   p_kst 1.893571e-02   p_cons 1.369286e-02   p_joint 7.342857e-03

Joint ci ratio: 1.090126e-01	ci left: 8.080525e-03	ci right 9.018620e-03	k: 1281	n:150000
Cons ci ratio: 8.604824e-02	ci left: 1.305910e-02	ci right 1.423981e-02	k: 2046	n:150000
KS ci ratio: 6.992753e-02	ci left: 1.980195e-02	ci right 2.124334e-02	k: 3077	n:150000
CWC22   150000 perm   47 sec   (3201 perm/sec)   p_kst 2.051333e-02   p_cons 1.364000e-02   p_joint 8.540000e-03

Joint ci ratio: 1.063170e-01	ci left: 7.976862e-03	ci right 8.878587e-03	k: 1347	n:160000
Cons ci ratio: 8.348011e-02	ci left: 1.302594e-02	ci right 1.416679e-02	k: 2174	n:160000
KS ci ratio: 6.785702e-02	ci left: 1.973749e-02	ci right 2.112997e-02	k: 3268	n:160000
CWC22   160000 perm   51 sec   (3152 perm/sec)   p_kst 2.042500e-02   p_cons 1.358750e-02   p_joint 8.418750e-03

Joint ci ratio: 1.085572e-01	ci left: 7.198365e-03	ci right 8.030324e-03	k: 1293	n:170000
Cons ci ratio: 8.114685e-02	ci left: 1.299137e-02	ci right 1.409589e-02	k: 2301	n:170000
KS ci ratio: 6.568934e-02	ci left: 1.984322e-02	ci right 2.119673e-02	k: 3487	n:170000
CWC22   170000 perm   55 sec   (3103 perm/sec)   p_kst 2.051176e-02   p_cons 1.353529e-02   p_joint 7.605882e-03

Joint ci ratio: 1.080350e-01	ci left: 6.868658e-03	ci right 7.658448e-03	k: 1306	n:180000
Cons ci ratio: 7.883454e-02	ci left: 1.301552e-02	ci right 1.408912e-02	k: 2438	n:180000
KS ci ratio: 6.380486e-02	ci left: 1.988314e-02	ci right 2.119903e-02	k: 3696	n:180000
CWC22   180000 perm   59 sec   (3059 perm/sec)   p_kst 2.053333e-02   p_cons 1.354444e-02   p_joint 7.255556e-03

Joint ci ratio: 1.091116e-01	ci left: 6.379056e-03	ci right 7.120325e-03	k: 1281	n:190000
Cons ci ratio: 7.649881e-02	ci left: 1.310982e-02	ci right 1.415773e-02	k: 2589	n:190000
KS ci ratio: 6.199281e-02	ci left: 1.997119e-02	ci right 2.125402e-02	k: 3915	n:190000
CWC22   190000 perm   63 sec   (3017 perm/sec)   p_kst 2.060526e-02   p_cons 1.362632e-02   p_joint 6.742105e-03

Joint ci ratio: 1.068471e-01	ci left: 6.327667e-03	ci right 7.046744e-03	k: 1336	n:200000
Cons ci ratio: 7.471919e-02	ci left: 1.306750e-02	ci right 1.408667e-02	k: 2714	n:200000
KS ci ratio: 6.048387e-02	ci left: 1.994746e-02	ci right 2.119649e-02	k: 4113	n:200000
CWC22   200000 perm   67 sec   (2974 perm/sec)   p_kst 2.056500e-02   p_cons 1.357000e-02   p_joint 6.680000e-03

Joint ci ratio: 9.353027e-02	ci left: 7.907083e-03	ci right 8.687533e-03	k: 1741	n:210000
Cons ci ratio: 7.279883e-02	ci left: 1.312299e-02	ci right 1.411907e-02	k: 2859	n:210000
KS ci ratio: 5.886434e-02	ci left: 2.007183e-02	ci right 2.129384e-02	k: 4342	n:210000
CWC22   210000 perm   72 sec   (2935 perm/sec)   p_kst 2.067619e-02   p_cons 1.361429e-02   p_joint 8.290476e-03

Outputting figure to mutsig2_images.part000000000045/CWC22.6_2803_210000_0.020676_0.013614_0.0082905.png
                gene_name: CWC22
               theta_stop: 0.094 
                    nperm: 210000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.021 
                   p_cons: 0.014 
      ci_cons_bounds_left: 0.013 
     ci_cons_bounds_right: 0.014 
                  p_joint: 0.0083 
     ci_joint_bounds_left: 0.0079 
    ci_joint_bounds_right: 0.0087 

Current progress: 25 percent done.
CXorf59
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.152016e-02	ci left: 4.613760e-01	ci right 4.810407e-01	k: 4712	n:10000
Cons ci ratio: 4.354932e-02	ci left: 4.377208e-01	ci right 4.573098e-01	k: 4475	n:10000
KS ci ratio: 4.948217e-02	ci left: 3.759451e-01	ci right 3.951216e-01	k: 3855	n:10000
CXorf59   10000 perm   2 sec   (5656 perm/sec)   p_kst 3.855000e-01   p_cons 4.475000e-01   p_joint 4.712000e-01

Outputting figure to mutsig2_images.part000000000045/CXorf59.6_1549_10000_0.3855_0.4475_0.4712.png
                gene_name: CXorf59
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 28 percent done.
CTTN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.653682e-02	ci left: 1.997852e-01	ci right 2.157854e-01	k: 2077	n:10000
Cons ci ratio: 1.217655e-01	ci left: 8.815461e-02	ci right 9.968320e-02	k: 938	n:10000
KS ci ratio: 2.892703e-02	ci left: 6.379438e-01	ci right 6.567703e-01	k: 6474	n:10000
CTTN   10000 perm   2 sec   (4686 perm/sec)   p_kst 6.474000e-01   p_cons 9.380000e-02   p_joint 2.077000e-01

Joint ci ratio: 3.742802e-02	ci left: 3.475184e-01	ci right 3.608240e-01	k: 7083	n:20000
Cons ci ratio: 8.739280e-02	ci left: 8.739173e-02	ci right 9.542751e-02	k: 1827	n:20000
KS ci ratio: 2.067538e-02	ci left: 6.358125e-01	ci right 6.491460e-01	k: 12850	n:20000
CTTN   20000 perm   5 sec   (4229 perm/sec)   p_kst 6.425000e-01   p_cons 9.135000e-02   p_joint 3.541500e-01

Outputting figure to mutsig2_images.part000000000045/CTTN.5_2131_20000_0.6425_0.09135_0.35415.png
                gene_name: CTTN
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.091 
      ci_cons_bounds_left: 0.087 
     ci_cons_bounds_right: 0.095 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 30 percent done.
CUL4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.700814e-02	ci left: 8.342946e-01	ci right 8.487059e-01	k: 8416	n:10000
KS ci ratio: 3.386992e-02	ci left: 5.627338e-01	ci right 5.822240e-01	k: 5725	n:10000
CUL4B   10000 perm   2 sec   (4821 perm/sec)   p_kst 5.725000e-01   p_cons 8.416000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000045/CUL4B.5_2839_10000_0.5725_0.8416_1.png
                gene_name: CUL4B
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 32 percent done.
CXCR4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.773228e-02	ci left: 5.091529e-01	ci right 5.288360e-01	k: 5190	n:10000
Cons ci ratio: 5.580505e-02	ci left: 3.210824e-01	ci right 3.396165e-01	k: 3303	n:10000
KS ci ratio: 3.939054e-02	ci left: 4.876522e-01	ci right 5.073492e-01	k: 4975	n:10000
CXCR4   10000 perm   2 sec   (5837 perm/sec)   p_kst 4.975000e-01   p_cons 3.303000e-01   p_joint 5.190000e-01

Outputting figure to mutsig2_images.part000000000045/CXCR4.5_1094_10000_0.4975_0.3303_0.519.png
                gene_name: CXCR4
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 35 percent done.
CXorf22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.507844e-02	ci left: 4.207667e-01	ci right 4.402738e-01	k: 4305	n:10000
Cons ci ratio: 3.262006e-02	ci left: 5.810878e-01	ci right 6.004593e-01	k: 5908	n:10000
KS ci ratio: 6.344096e-02	ci left: 2.674529e-01	ci right 2.850777e-01	k: 2762	n:10000
CXorf22   10000 perm   2 sec   (5035 perm/sec)   p_kst 2.762000e-01   p_cons 5.908000e-01   p_joint 4.305000e-01

Outputting figure to mutsig2_images.part000000000045/CXorf22.5_2995_10000_0.2762_0.5908_0.4305.png
                gene_name: CXorf22
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 38 percent done.
CUL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.027713e-02	ci left: 6.167323e-01	ci right 6.357941e-01	k: 6263	n:10000
Cons ci ratio: 2.237232e-02	ci left: 7.457390e-01	ci right 7.627127e-01	k: 7543	n:10000
KS ci ratio: 3.488391e-02	ci left: 5.482006e-01	ci right 5.677656e-01	k: 5580	n:10000
CUL1   10000 perm   2 sec   (5495 perm/sec)   p_kst 5.580000e-01   p_cons 7.543000e-01   p_joint 6.263000e-01

Outputting figure to mutsig2_images.part000000000045/CUL1.4_2415_10000_0.558_0.7543_0.6263.png
                gene_name: CUL1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 40 percent done.
CUL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.042023e-02	ci left: 4.747605e-01	ci right 4.944485e-01	k: 4846	n:10000
KS ci ratio: 2.046673e-02	ci left: 7.776263e-01	ci right 7.938069e-01	k: 7858	n:10000
CUL5   10000 perm   2 sec   (4868 perm/sec)   p_kst 7.858000e-01   p_cons 4.846000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000045/CUL5.4_2419_10000_0.7858_0.4846_1.png
                gene_name: CUL5
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 42 percent done.
CXorf21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.421586e-02	ci left: 4.302397e-01	ci right 4.497953e-01	k: 4400	n:10000
KS ci ratio: 5.809187e-03	ci left: 9.755703e-01	ci right 9.813463e-01	k: 9786	n:10000
CXorf21   10000 perm   2 sec   (6085 perm/sec)   p_kst 9.786000e-01   p_cons 4.400000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000045/CXorf21.4_910_10000_0.9786_0.44_1.png
                gene_name: CXorf21
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 45 percent done.
CTSA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.771718e-02	ci left: 5.093530e-01	ci right 5.290358e-01	k: 5192	n:10000
Cons ci ratio: 6.326693e-02	ci left: 2.685418e-01	ci right 2.861881e-01	k: 2773	n:10000
KS ci ratio: 5.084582e-02	ci left: 3.632113e-01	ci right 3.822629e-01	k: 3727	n:10000
CTSA   10000 perm   2 sec   (5957 perm/sec)   p_kst 3.727000e-01   p_cons 2.773000e-01   p_joint 5.192000e-01

Outputting figure to mutsig2_images.part000000000045/CTSA.3_1557_10000_0.3727_0.2773_0.5192.png
                gene_name: CTSA
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 48 percent done.
CTSG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.593140e-02	ci left: 3.200898e-01	ci right 3.386097e-01	k: 3293	n:10000
Cons ci ratio: 5.921521e-02	ci left: 2.955875e-01	ci right 3.137265e-01	k: 3046	n:10000
KS ci ratio: 7.896600e-02	ci left: 1.898346e-01	ci right 2.055419e-01	k: 1976	n:10000
CTSG   10000 perm   2 sec   (6180 perm/sec)   p_kst 1.976000e-01   p_cons 3.046000e-01   p_joint 3.293000e-01

Outputting figure to mutsig2_images.part000000000045/CTSG.3_788_10000_0.1976_0.3046_0.3293.png
                gene_name: CTSG
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 50 percent done.
CTSL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.769921e-02	ci left: 3.065949e-01	ci right 3.249125e-01	k: 3157	n:10000
Cons ci ratio: 7.614384e-02	ci left: 2.014608e-01	ci right 2.175088e-01	k: 2094	n:10000
KS ci ratio: 2.915544e-02	ci left: 6.343234e-01	ci right 6.531928e-01	k: 6438	n:10000
CTSL1   10000 perm   2 sec   (6394 perm/sec)   p_kst 6.438000e-01   p_cons 2.094000e-01   p_joint 3.157000e-01

Outputting figure to mutsig2_images.part000000000045/CTSL1.3_1030_10000_0.6438_0.2094_0.3157.png
                gene_name: CTSL1
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 52 percent done.
CWC15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.848272e-02	ci left: 3.008425e-01	ci right 3.190683e-01	k: 3099	n:10000
Cons ci ratio: 3.231743e-02	ci left: 5.856032e-01	ci right 6.049412e-01	k: 5953	n:10000
KS ci ratio: 6.486675e-02	ci left: 2.587439e-01	ci right 2.761918e-01	k: 2674	n:10000
CWC15   10000 perm   1 sec   (7338 perm/sec)   p_kst 2.674000e-01   p_cons 5.953000e-01   p_joint 3.099000e-01

Outputting figure to mutsig2_images.part000000000045/CWC15.3_713_10000_0.2674_0.5953_0.3099.png
                gene_name: CWC15
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 55 percent done.
CX3CR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.151886e-02	ci left: 1.800887e-01	ci right 1.954937e-01	k: 1877	n:10000
Cons ci ratio: 6.784775e-03	ci left: 9.675208e-01	ci right 9.742012e-01	k: 9710	n:10000
KS ci ratio: 1.298648e-01	ci left: 7.805288e-02	ci right 8.899118e-02	k: 834	n:10000
CX3CR1   10000 perm   2 sec   (6469 perm/sec)   p_kst 8.340000e-02   p_cons 9.710000e-01   p_joint 1.877000e-01

Joint ci ratio: 4.578041e-02	ci left: 2.620692e-01	ci right 2.743983e-01	k: 5364	n:20000
Cons ci ratio: 4.738398e-03	ci left: 9.692551e-01	ci right 9.739064e-01	k: 19433	n:20000
KS ci ratio: 9.126482e-02	ci left: 8.058298e-02	ci right 8.833833e-02	k: 1688	n:20000
CX3CR1   20000 perm   4 sec   (5414 perm/sec)   p_kst 8.440000e-02   p_cons 9.716500e-01   p_joint 2.682000e-01

Outputting figure to mutsig2_images.part000000000045/CX3CR1.3_1172_20000_0.0844_0.97165_0.2682.png
                gene_name: CX3CR1
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.084 
        ci_ks_bounds_left: 0.081 
       ci_ks_bounds_right: 0.088 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 57 percent done.
CXorf23
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.105657e-02	ci left: 4.669687e-01	ci right 4.866448e-01	k: 4768	n:10000
Cons ci ratio: 8.707717e-02	ci left: 1.611128e-01	ci right 1.758809e-01	k: 1684	n:10000
KS ci ratio: 3.323079e-02	ci left: 5.720595e-01	ci right 5.914928e-01	k: 5818	n:10000
CXorf23   10000 perm   2 sec   (5762 perm/sec)   p_kst 5.818000e-01   p_cons 1.684000e-01   p_joint 4.768000e-01

Outputting figure to mutsig2_images.part000000000045/CXorf23.3_2093_10000_0.5818_0.1684_0.4768.png
                gene_name: CXorf23
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 60 percent done.
CXorf57
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.480348e-02	ci left: 1.390351e-01	ci right 1.529718e-01	k: 1459	n:10000
Cons ci ratio: 8.776711e-02	ci left: 1.589518e-01	ci right 1.736431e-01	k: 1662	n:10000
KS ci ratio: 8.481661e-02	ci left: 1.684829e-01	ci right 1.835063e-01	k: 1759	n:10000
CXorf57   10000 perm   2 sec   (5165 perm/sec)   p_kst 1.759000e-01   p_cons 1.662000e-01   p_joint 1.459000e-01

Outputting figure to mutsig2_images.part000000000045/CXorf57.3_2624_10000_0.1759_0.1662_0.1459.png
                gene_name: CXorf57
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 62 percent done.
CTSD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.537586e-02	ci left: 8.598813e-01	ci right 8.733044e-01	k: 8667	n:10000
Cons ci ratio: 3.719929e-02	ci left: 5.162571e-01	ci right 5.359277e-01	k: 5261	n:10000
KS ci ratio: 1.552184e-02	ci left: 8.576357e-01	ci right 8.711513e-01	k: 8645	n:10000
CTSD   10000 perm   2 sec   (6116 perm/sec)   p_kst 8.645000e-01   p_cons 5.261000e-01   p_joint 8.667000e-01

Outputting figure to mutsig2_images.part000000000045/CTSD.2_1275_10000_0.8645_0.5261_0.8667.png
                gene_name: CTSD
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 65 percent done.
CTSF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.673202e-02	ci left: 5.225625e-01	ci right 5.422186e-01	k: 5324	n:10000
Cons ci ratio: 5.689464e-02	ci left: 3.126467e-01	ci right 3.310572e-01	k: 3218	n:10000
KS ci ratio: 4.749465e-02	ci left: 3.954571e-01	ci right 4.147982e-01	k: 4051	n:10000
CTSF   10000 perm   2 sec   (5939 perm/sec)   p_kst 4.051000e-01   p_cons 3.218000e-01   p_joint 5.324000e-01

Outputting figure to mutsig2_images.part000000000045/CTSF.2_1507_10000_0.4051_0.3218_0.5324.png
                gene_name: CTSF
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 68 percent done.
CTSO
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.399846e-03	ci left: 9.410771e-01	ci right 9.500611e-01	k: 9457	n:10000
Cons ci ratio: 5.475004e-02	ci left: 3.295215e-01	ci right 3.481725e-01	k: 3388	n:10000
KS ci ratio: 1.851468e-01	ci left: 3.891660e-02	ci right 4.695241e-02	k: 428	n:10000
CTSO   10000 perm   2 sec   (6590 perm/sec)   p_kst 4.280000e-02   p_cons 3.388000e-01   p_joint 9.457000e-01

Joint ci ratio: 1.540136e-02	ci left: 7.581529e-01	ci right 7.699703e-01	k: 15282	n:20000
Cons ci ratio: 3.856339e-02	ci left: 3.340306e-01	ci right 3.472158e-01	k: 6812	n:20000
KS ci ratio: 1.350006e-01	ci left: 3.771321e-02	ci right 4.322141e-02	k: 808	n:20000
CTSO   20000 perm   4 sec   (5487 perm/sec)   p_kst 4.040000e-02   p_cons 3.406000e-01   p_joint 7.641000e-01

Joint ci ratio: 5.863010e-03	ci left: 9.343275e-01	ci right 9.398542e-01	k: 28114	n:30000
Cons ci ratio: 3.143670e-02	ci left: 3.359667e-01	ci right 3.467307e-01	k: 10240	n:30000
KS ci ratio: 1.086744e-01	ci left: 3.930342e-02	ci right 4.385257e-02	k: 1246	n:30000
CTSO   30000 perm   6 sec   (5176 perm/sec)   p_kst 4.153333e-02   p_cons 3.413333e-01   p_joint 9.371333e-01

Joint ci ratio: 5.034414e-03	ci left: 9.357195e-01	ci right 9.404667e-01	k: 37525	n:40000
Cons ci ratio: 2.716555e-02	ci left: 3.376742e-01	ci right 3.469987e-01	k: 13693	n:40000
KS ci ratio: 9.479130e-02	ci left: 3.905325e-02	ci right 4.296375e-02	k: 1639	n:40000
CTSO   40000 perm   8 sec   (4987 perm/sec)   p_kst 4.097500e-02   p_cons 3.423250e-01   p_joint 9.381250e-01

Outputting figure to mutsig2_images.part000000000045/CTSO.2_998_40000_0.040975_0.34232_0.93812.png
                gene_name: CTSO
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.041 
        ci_ks_bounds_left: 0.039 
       ci_ks_bounds_right: 0.043 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.94 

Current progress: 70 percent done.
CTSS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.099836e-02	ci left: 3.618190e-01	ci right 3.808560e-01	k: 3713	n:10000
Cons ci ratio: 6.565505e-03	ci left: 9.694208e-01	ci right 9.758999e-01	k: 9728	n:10000
KS ci ratio: 8.467069e-02	ci left: 1.689744e-01	ci right 1.840145e-01	k: 1764	n:10000
CTSS   10000 perm   1 sec   (6899 perm/sec)   p_kst 1.764000e-01   p_cons 9.728000e-01   p_joint 3.713000e-01

Outputting figure to mutsig2_images.part000000000045/CTSS.2_1024_10000_0.1764_0.9728_0.3713.png
                gene_name: CTSS
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 72 percent done.
CTSW
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.282242e-02	ci left: 8.974420e-01	ci right 9.091219e-01	k: 9034	n:10000
Cons ci ratio: 8.403543e-02	ci left: 1.711374e-01	ci right 1.862502e-01	k: 1786	n:10000
KS ci ratio: 1.570673e-02	ci left: 8.547786e-01	ci right 8.684100e-01	k: 8617	n:10000
CTSW   10000 perm   2 sec   (6360 perm/sec)   p_kst 8.617000e-01   p_cons 1.786000e-01   p_joint 9.034000e-01

Outputting figure to mutsig2_images.part000000000045/CTSW.2_1171_10000_0.8617_0.1786_0.9034.png
                gene_name: CTSW
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 75 percent done.
CTSZ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.606713e-02	ci left: 8.491691e-01	ci right 8.630228e-01	k: 8562	n:10000
KS ci ratio: 5.970793e-02	ci left: 2.921179e-01	ci right 3.101981e-01	k: 3011	n:10000
CTSZ   10000 perm   2 sec   (6546 perm/sec)   p_kst 3.011000e-01   p_cons 8.562000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000045/CTSZ.2_936_10000_0.3011_0.8562_1.png
                gene_name: CTSZ
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
CUTC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.075295e-01	ci left: 1.109577e-01	ci right 1.236661e-01	k: 1172	n:10000
KS ci ratio: 3.136044e-02	ci left: 6.000581e-01	ci right 6.192779e-01	k: 6097	n:10000
CUTC   10000 perm   2 sec   (6544 perm/sec)   p_kst 6.097000e-01   p_cons 1.172000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 7.623887e-02	ci left: 1.122813e-01	ci right 1.212304e-01	k: 2334	n:20000
KS ci ratio: 2.231168e-02	ci left: 5.999903e-01	ci right 6.135787e-01	k: 12136	n:20000
CUTC   20000 perm   4 sec   (5593 perm/sec)   p_kst 6.068000e-01   p_cons 1.167000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000045/CUTC.2_858_20000_0.6068_0.1167_1.png
                gene_name: CUTC
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
CUX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.369981e-01	ci left: 3.885975e-03	ci right 6.813584e-03	k: 52	n:10000
Cons ci ratio: 4.295548e-02	ci left: 4.445057e-01	ci right 4.641209e-01	k: 4543	n:10000
KS ci ratio: 3.683071e-01	ci left: 9.139894e-03	ci right 1.335208e-02	k: 111	n:10000
CUX2   10000 perm   2 sec   (4533 perm/sec)   p_kst 1.110000e-02   p_cons 4.543000e-01   p_joint 5.200000e-03

Joint ci ratio: 2.478726e-01	ci left: 1.081866e-02	ci right 1.392552e-02	k: 246	n:20000
Cons ci ratio: 3.139526e-02	ci left: 4.311084e-01	ci right 4.449096e-01	k: 8760	n:20000
KS ci ratio: 2.604388e-01	ci left: 9.741161e-03	ci right 1.270351e-02	k: 223	n:20000
CUX2   20000 perm   5 sec   (4093 perm/sec)   p_kst 1.115000e-02   p_cons 4.380000e-01   p_joint 1.230000e-02

Joint ci ratio: 2.189992e-01	ci left: 9.409021e-03	ci right 1.175388e-02	k: 316	n:30000
Cons ci ratio: 2.553100e-02	ci left: 4.343723e-01	ci right 4.456393e-01	k: 13200	n:30000
KS ci ratio: 2.155883e-01	ci left: 9.724379e-03	ci right 1.210509e-02	k: 326	n:30000
CUX2   30000 perm   8 sec   (3911 perm/sec)   p_kst 1.086667e-02   p_cons 4.400000e-01   p_joint 1.053333e-02

Joint ci ratio: 1.907267e-01	ci left: 9.452805e-03	ci right 1.146921e-02	k: 417	n:40000
Cons ci ratio: 2.140480e-02	ci left: 4.511599e-01	ci right 4.609465e-01	k: 18242	n:40000
KS ci ratio: 1.877974e-01	ci left: 9.762548e-03	ci right 1.180941e-02	k: 430	n:40000
CUX2   40000 perm   11 sec   (3794 perm/sec)   p_kst 1.075000e-02   p_cons 4.560500e-01   p_joint 1.042500e-02

Joint ci ratio: 6.214066e-02	ci left: 7.142460e-02	ci right 7.602504e-02	k: 3685	n:50000
Cons ci ratio: 1.917725e-02	ci left: 4.508477e-01	ci right 4.595975e-01	k: 22761	n:50000
KS ci ratio: 1.684066e-01	ci left: 9.816677e-03	ci right 1.164080e-02	k: 535	n:50000
CUX2   50000 perm   13 sec   (3708 perm/sec)   p_kst 1.070000e-02   p_cons 4.552200e-01   p_joint 7.370000e-02

Joint ci ratio: 6.945231e-02	ci left: 4.866296e-02	ci right 5.218069e-02	k: 3024	n:60000
Cons ci ratio: 1.750304e-02	ci left: 4.513258e-01	ci right 4.593118e-01	k: 27319	n:60000
KS ci ratio: 1.562327e-01	ci left: 9.571629e-03	ci right 1.120958e-02	k: 622	n:60000
CUX2   60000 perm   16 sec   (3638 perm/sec)   p_kst 1.036667e-02   p_cons 4.553167e-01   p_joint 5.040000e-02

Joint ci ratio: 4.947958e-02	ci left: 8.024608e-02	ci right 8.433148e-02	k: 5759	n:70000
Cons ci ratio: 1.621228e-02	ci left: 4.513915e-01	ci right 4.587837e-01	k: 31856	n:70000
KS ci ratio: 1.454376e-01	ci left: 9.523951e-03	ci right 1.103134e-02	k: 718	n:70000
CUX2   70000 perm   20 sec   (3545 perm/sec)   p_kst 1.025714e-02   p_cons 4.550857e-01   p_joint 8.227143e-02

Joint ci ratio: 5.145106e-02	ci left: 6.590679e-02	ci right 6.939964e-02	k: 5411	n:80000
Cons ci ratio: 1.514953e-02	ci left: 4.521443e-01	ci right 4.590589e-01	k: 36448	n:80000
KS ci ratio: 1.357705e-01	ci left: 9.611915e-03	ci right 1.102394e-02	k: 824	n:80000
CUX2   80000 perm   23 sec   (3468 perm/sec)   p_kst 1.030000e-02   p_cons 4.556000e-01   p_joint 6.763750e-02

Joint ci ratio: 4.420766e-02	ci left: 7.856554e-02	ci right 8.212823e-02	k: 7230	n:90000
Cons ci ratio: 1.430108e-02	ci left: 4.517204e-01	ci right 4.582381e-01	k: 40948	n:90000
KS ci ratio: 1.285051e-01	ci left: 9.575334e-03	ci right 1.090096e-02	k: 920	n:90000
CUX2   90000 perm   26 sec   (3403 perm/sec)   p_kst 1.022222e-02   p_cons 4.549778e-01   p_joint 8.033333e-02

Joint ci ratio: 3.860918e-02	ci left: 9.164291e-02	ci right 9.526071e-02	k: 9344	n:100000
Cons ci ratio: 1.356223e-02	ci left: 4.520698e-01	ci right 4.582528e-01	k: 45516	n:100000
KS ci ratio: 1.223544e-01	ci left: 9.537991e-03	ci right 1.079067e-02	k: 1015	n:100000
CUX2   100000 perm   30 sec   (3341 perm/sec)   p_kst 1.015000e-02   p_cons 4.551600e-01   p_joint 9.344000e-02

Joint ci ratio: 3.679564e-02	ci left: 9.180377e-02	ci right 9.525406e-02	k: 10287	n:110000
Cons ci ratio: 1.291206e-02	ci left: 4.529443e-01	ci right 4.588398e-01	k: 50148	n:110000
KS ci ratio: 1.171165e-01	ci left: 9.491025e-03	ci right 1.068047e-02	k: 1108	n:110000
CUX2   110000 perm   34 sec   (3274 perm/sec)   p_kst 1.007273e-02   p_cons 4.558909e-01   p_joint 9.351818e-02

Joint ci ratio: 3.582433e-02	ci left: 8.909741e-02	ci right 9.235573e-02	k: 10886	n:120000
Cons ci ratio: 1.234783e-02	ci left: 4.536537e-01	ci right 4.592984e-01	k: 54777	n:120000
KS ci ratio: 1.113805e-01	ci left: 9.647296e-03	ci right 1.079323e-02	k: 1225	n:120000
CUX2   120000 perm   37 sec   (3237 perm/sec)   p_kst 1.020833e-02   p_cons 4.564750e-01   p_joint 9.071667e-02

Joint ci ratio: 3.454833e-02	ci left: 8.854886e-02	ci right 9.166945e-02	k: 11713	n:130000
Cons ci ratio: 1.186908e-02	ci left: 4.535281e-01	ci right 4.589508e-01	k: 59311	n:130000
KS ci ratio: 1.067339e-01	ci left: 9.720811e-03	ci right 1.082427e-02	k: 1334	n:130000
CUX2   130000 perm   41 sec   (3198 perm/sec)   p_kst 1.026154e-02   p_cons 4.562385e-01   p_joint 9.010000e-02

Joint ci ratio: 3.449068e-02	ci left: 8.301267e-02	ci right 8.593314e-02	k: 11825	n:140000
Cons ci ratio: 1.142901e-02	ci left: 4.539881e-01	ci right 4.592137e-01	k: 63924	n:140000
KS ci ratio: 1.028403e-01	ci left: 9.742908e-03	ci right 1.080609e-02	k: 1437	n:140000
CUX2   140000 perm   44 sec   (3152 perm/sec)   p_kst 1.026429e-02   p_cons 4.566000e-01   p_joint 8.446429e-02

Joint ci ratio: 3.336104e-02	ci left: 8.287884e-02	ci right 8.569726e-02	k: 12642	n:150000
Cons ci ratio: 1.103600e-02	ci left: 4.543233e-01	ci right 4.593717e-01	k: 68527	n:150000
KS ci ratio: 9.927877e-02	ci left: 9.775697e-03	ci right 1.080336e-02	k: 1542	n:150000
CUX2   150000 perm   48 sec   (3101 perm/sec)   p_kst 1.028000e-02   p_cons 4.568467e-01   p_joint 8.428000e-02

Outputting figure to mutsig2_images.part000000000045/CUX2.2_4549_150000_0.01028_0.45685_0.08428.png
                gene_name: CUX2
               theta_stop: 0.099 
                    nperm: 150000 
                     p_ks: 0.010 
        ci_ks_bounds_left: 0.0098 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.084 
     ci_joint_bounds_left: 0.083 
    ci_joint_bounds_right: 0.086 

Current progress: 82 percent done.
CUZD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.732877e-02	ci left: 6.636054e-01	ci right 6.820938e-01	k: 6729	n:10000
Cons ci ratio: 1.500129e-02	ci left: 8.656000e-01	ci right 8.787824e-01	k: 8723	n:10000
KS ci ratio: 4.507844e-02	ci left: 4.207667e-01	ci right 4.402738e-01	k: 4305	n:10000
CUZD1   10000 perm   2 sec   (6089 perm/sec)   p_kst 4.305000e-01   p_cons 8.723000e-01   p_joint 6.729000e-01

Outputting figure to mutsig2_images.part000000000045/CUZD1.2_1860_10000_0.4305_0.8723_0.6729.png
                gene_name: CUZD1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 85 percent done.
CWC27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.946129e-02	ci left: 3.761441e-01	ci right 3.953225e-01	k: 3857	n:10000
Cons ci ratio: 1.120139e-01	ci left: 1.029565e-01	ci right 1.152723e-01	k: 1090	n:10000
KS ci ratio: 2.187888e-01	ci left: 2.769020e-02	ci right 3.458650e-02	k: 310	n:10000
CWC27   10000 perm   2 sec   (6244 perm/sec)   p_kst 3.100000e-02   p_cons 1.090000e-01   p_joint 3.857000e-01

Joint ci ratio: 4.281417e-02	ci left: 2.889829e-01	ci right 3.016766e-01	k: 5906	n:20000
Cons ci ratio: 7.999126e-02	ci left: 1.028957e-01	ci right 1.115189e-01	k: 2143	n:20000
KS ci ratio: 1.541997e-01	ci left: 2.888197e-02	ci right 3.375555e-02	k: 625	n:20000
CWC27   20000 perm   4 sec   (5329 perm/sec)   p_kst 3.125000e-02   p_cons 1.071500e-01   p_joint 2.953000e-01

Joint ci ratio: 6.587650e-02	ci left: 1.020783e-01	ci right 1.090650e-01	k: 3166	n:30000
Cons ci ratio: 6.476173e-02	ci left: 1.052977e-01	ci right 1.123782e-01	k: 3264	n:30000
KS ci ratio: 1.259045e-01	ci left: 2.932611e-02	ci right 3.329867e-02	k: 938	n:30000
CWC27   30000 perm   6 sec   (5012 perm/sec)   p_kst 3.126667e-02   p_cons 1.088000e-01   p_joint 1.055333e-01

Joint ci ratio: 7.269040e-02	ci left: 6.530609e-02	ci right 7.025688e-02	k: 2710	n:40000
Cons ci ratio: 5.662208e-02	ci left: 1.039622e-01	ci right 1.100450e-01	k: 4279	n:40000
KS ci ratio: 1.101776e-01	ci left: 2.898247e-02	ci right 3.238611e-02	k: 1226	n:40000
CWC27   40000 perm   8 sec   (4807 perm/sec)   p_kst 3.065000e-02   p_cons 1.069750e-01   p_joint 6.775000e-02

Joint ci ratio: 3.667368e-02	ci left: 1.825778e-01	ci right 1.894187e-01	k: 9299	n:50000
Cons ci ratio: 5.037072e-02	ci left: 1.053120e-01	ci right 1.107736e-01	k: 5401	n:50000
KS ci ratio: 9.794653e-02	ci left: 2.951763e-02	ci right 3.257713e-02	k: 1551	n:50000
CWC27   50000 perm   11 sec   (4669 perm/sec)   p_kst 3.102000e-02   p_cons 1.080200e-01   p_joint 1.859800e-01

Outputting figure to mutsig2_images.part000000000045/CWC27.2_1475_50000_0.03102_0.10802_0.18598.png
                gene_name: CWC27
               theta_stop: 0.098 
                    nperm: 50000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.030 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 88 percent done.
CXCL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.340334e-02	ci left: 2.136891e-01	ci right 2.300732e-01	k: 2218	n:10000
Cons ci ratio: 6.962205e-02	ci left: 2.322487e-01	ci right 2.491027e-01	k: 2406	n:10000
KS ci ratio: 6.728524e-02	ci left: 2.447989e-01	ci right 2.619450e-01	k: 2533	n:10000
CXCL5   10000 perm   1 sec   (7155 perm/sec)   p_kst 2.533000e-01   p_cons 2.406000e-01   p_joint 2.218000e-01

Outputting figure to mutsig2_images.part000000000045/CXCL5.2_361_10000_0.2533_0.2406_0.2218.png
                gene_name: CXCL5
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 90 percent done.
CXCR7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.491176e-02	ci left: 7.033165e-01	ci right 7.211597e-01	k: 7123	n:10000
KS ci ratio: 2.182909e-02	ci left: 7.548431e-01	ci right 7.716033e-01	k: 7633	n:10000
CXCR7   10000 perm   1 sec   (6739 perm/sec)   p_kst 7.633000e-01   p_cons 7.123000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000045/CXCR7.2_1093_10000_0.7633_0.7123_1.png
                gene_name: CXCR7
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
CXXC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.615832e-02	ci left: 8.477417e-01	ci right 8.616509e-01	k: 8548	n:10000
Cons ci ratio: 2.370625e-02	ci left: 7.234042e-01	ci right 7.408604e-01	k: 7322	n:10000
KS ci ratio: 4.932590e-02	ci left: 3.774378e-01	ci right 3.966281e-01	k: 3870	n:10000
CXXC1   10000 perm   2 sec   (5969 perm/sec)   p_kst 3.870000e-01   p_cons 7.322000e-01   p_joint 8.548000e-01

Outputting figure to mutsig2_images.part000000000045/CXXC1.2_2043_10000_0.387_0.7322_0.8548.png
                gene_name: CXXC1
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 95 percent done.
CXorf61
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.021046e-02	ci left: 4.773583e-01	ci right 4.970491e-01	k: 4872	n:10000
KS ci ratio: 3.389760e-02	ci left: 5.623328e-01	ci right 5.818252e-01	k: 5721	n:10000
CXorf61   10000 perm   1 sec   (6957 perm/sec)   p_kst 5.721000e-01   p_cons 4.872000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000045/CXorf61.2_350_10000_0.5721_0.4872_1.png
                gene_name: CXorf61
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
CXorf65
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.947396e-02	ci left: 6.292960e-01	ci right 6.482231e-01	k: 6388	n:10000
Cons ci ratio: 1.534259e-02	ci left: 8.603917e-01	ci right 8.737937e-01	k: 8672	n:10000
KS ci ratio: 6.178537e-02	ci left: 2.780479e-01	ci right 2.958764e-01	k: 2869	n:10000
CXorf65   10000 perm   1 sec   (7452 perm/sec)   p_kst 2.869000e-01   p_cons 8.672000e-01   p_joint 6.388000e-01

Outputting figure to mutsig2_images.part000000000045/CXorf65.2_576_10000_0.2869_0.8672_0.6388.png
                gene_name: CXorf65
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000045
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 45 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1714>
Subject: Job 8003996: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1714>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000046> was used as the working directory.
Started at Sun Nov 11 15:05:02 2012
Results reported at Sun Nov 11 15:12:19 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000046.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000046.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 46  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000046.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    474.86 sec.
    Max Memory :      4785 MB
    Max Swap   :      7043 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
46
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 46
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 46: processing genes 4072 - 4162
Calculating significance of each gene.
Using projection method.
4072	CYB561	4.504451e-01
4073	CYB561D1	1
4074	CYB561D2	1
4075	CYB5A	1
4076	CYB5B	1
4077	CYB5D1	1
4078	CYB5D2	1
4079	CYB5R1	7.182954e-01
4080	CYB5R2	4.828019e-01
4081	CYB5R3	1
4082	CYB5R4	2.873454e-01
4083	CYB5RL	1
4084	CYBA	1
4085	CYBASC3	1
4086	CYBB	1.570421e-01
4087	CYBRD1	1
4088	CYC1	2.635775e-03
4089	CYCS	1
4090	CYFIP1	6.691310e-01
4091	CYFIP2	9.720796e-01
4092	CYGB	1
4093	CYHR1	1
4094	CYLC1	5.101681e-01
4095	CYLC2	5.599439e-01
4096	CYLD	7.750831e-02
4097	CYP11A1	6.633614e-01
4098	CYP11B1	1.175892e-07
4099	CYP11B2	8.247373e-03
4100	CYP17A1	6.139068e-01
4101	CYP19A1	2.142018e-01
4102	CYP1A1	7.752284e-03
4103	CYP1A2	9.296322e-01
4104	CYP1B1	8.419847e-01
4105	CYP20A1	7.902798e-01
4106	CYP21A2	6.346585e-01
4107	CYP24A1	3.258327e-01
4108	CYP26A1	7.398543e-01
4109	CYP26B1	1.948315e-01
4110	CYP26C1	1
4111	CYP27A1	7.320433e-01
4112	CYP27B1	1
4113	CYP27C1	3.667462e-01
4114	CYP2A13	1
4115	CYP2A6	6.480685e-02
4116	CYP2A7	7.991800e-01
4117	CYP2B6	2.139446e-01
4118	CYP2C18	3.874313e-01
4119	CYP2C19	1.312077e-02
4120	CYP2C8	5.919424e-01
4121	CYP2C9	2.684363e-01
4122	CYP2D6	7.835862e-01
4123	CYP2E1	1
4124	CYP2F1	1
4125	CYP2J2	8.658879e-01
4126	CYP2R1	1
4127	CYP2S1	8.311331e-01
4128	CYP2U1	1
4129	CYP2W1	7.003009e-01
4130	CYP39A1	8.108135e-01
4131	CYP3A4	8.318508e-01
4132	CYP3A43	1.840461e-01
4133	CYP3A5	1
4134	CYP3A7	8.963966e-01
4135	CYP46A1	6.946775e-01
4136	CYP4A11	1
4137	CYP4A22	5.538580e-01
4138	CYP4B1	3.402956e-01
4139	CYP4F11	7.662146e-01
4140	CYP4F12	6.298112e-02
4141	CYP4F2	1
4142	CYP4F22	8.975154e-01
4143	CYP4F3	8.084595e-01
4144	CYP4F8	4.021586e-01
4145	CYP4V2	7.818282e-02
4146	CYP4X1	6.965101e-01
4147	CYP4Z1	7.656868e-01
4148	CYP51A1	1
4149	CYP7A1	4.788787e-01
4150	CYP7B1	1
4151	CYP8B1	8.463821e-01
4152	CYR61	1
4153	CYSLTR1	3.032712e-01
4154	CYSLTR2	1
4155	CYTH1	1
4156	CYTH2	5.438131e-01
4157	CYTH3	4.044143e-01
4158	CYTH4	1
4159	CYTIP	7.515384e-01
4160	CYTL1	3.467199e-01
4161	CYTSA	8.655946e-01
4162	CYTSB	9.924217e-01
Done

Running MutSig 2:
Scatter job 46: processing genes 4072 - 4162
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CYP11B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.090017e-02	ci left: 1.496259e-01	ci right 1.639746e-01	k: 1567	n:10000
Cons ci ratio: 1.284443e-02	ci left: 8.971340e-01	ci right 9.088300e-01	k: 9031	n:10000
KS ci ratio: 1.247955e-01	ci left: 8.416945e-02	ci right 9.547082e-02	k: 897	n:10000
CYP11B1   10000 perm   2 sec   (5203 perm/sec)   p_kst 8.970000e-02   p_cons 9.031000e-01   p_joint 1.567000e-01

Joint ci ratio: 5.598816e-02	ci left: 1.913093e-01	ci right 2.023790e-01	k: 3936	n:20000
Cons ci ratio: 9.078381e-03	ci left: 8.989673e-01	ci right 9.072150e-01	k: 18063	n:20000
KS ci ratio: 8.622963e-02	ci left: 8.959754e-02	ci right 9.772104e-02	k: 1872	n:20000
CYP11B1   20000 perm   7 sec   (3051 perm/sec)   p_kst 9.360000e-02   p_cons 9.031500e-01   p_joint 1.968000e-01

Outputting figure to mutsig2_images.part000000000046/CYP11B1.15_1548_20000_0.0936_0.90315_0.1968.png
                gene_name: CYP11B1
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.094 
        ci_ks_bounds_left: 0.090 
       ci_ks_bounds_right: 0.098 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 2 percent done.
CYLC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.833676e-01	ci left: 3.968114e-02	ci right 4.778736e-02	k: 436	n:10000
Cons ci ratio: 1.310673e-01	ci left: 7.669486e-02	ci right 8.755004e-02	k: 820	n:10000
KS ci ratio: 1.743772e-01	ci left: 4.389243e-02	ci right 5.237330e-02	k: 480	n:10000
CYLC1   10000 perm   2 sec   (5414 perm/sec)   p_kst 4.800000e-02   p_cons 8.200000e-02   p_joint 4.360000e-02

Joint ci ratio: 2.035806e-01	ci left: 1.634521e-02	ci right 2.009673e-02	k: 363	n:20000
Cons ci ratio: 9.503318e-02	ci left: 7.466227e-02	ci right 8.216085e-02	k: 1567	n:20000
KS ci ratio: 1.246042e-01	ci left: 4.420494e-02	ci right 5.012760e-02	k: 942	n:20000
CYLC1   20000 perm   4 sec   (4833 perm/sec)   p_kst 4.710000e-02   p_cons 7.835000e-02   p_joint 1.815000e-02

Joint ci ratio: 1.342508e-01	ci left: 2.577538e-02	ci right 2.951685e-02	k: 828	n:30000
Cons ci ratio: 7.750545e-02	ci left: 7.551352e-02	ci right 8.163506e-02	k: 2356	n:30000
KS ci ratio: 1.031833e-01	ci left: 4.352684e-02	ci right 4.829493e-02	k: 1376	n:30000
CYLC1   30000 perm   6 sec   (4628 perm/sec)   p_kst 4.586667e-02   p_cons 7.853333e-02   p_joint 2.760000e-02

Joint ci ratio: 1.213467e-01	ci left: 2.388016e-02	ci right 2.698926e-02	k: 1016	n:40000
Cons ci ratio: 6.510466e-02	ci left: 8.038813e-02	ci right 8.582258e-02	k: 3323	n:40000
KS ci ratio: 9.026519e-02	ci left: 4.298905e-02	ci right 4.707733e-02	k: 1800	n:40000
CYLC1   40000 perm   9 sec   (4343 perm/sec)   p_kst 4.500000e-02   p_cons 8.307500e-02   p_joint 2.540000e-02

Joint ci ratio: 1.029108e-01	ci left: 2.674691e-02	ci right 2.966821e-02	k: 1409	n:50000
Cons ci ratio: 6.290863e-02	ci left: 6.978861e-02	ci right 7.434123e-02	k: 3602	n:50000
KS ci ratio: 7.952724e-02	ci left: 4.449413e-02	ci right 4.819877e-02	k: 2316	n:50000
CYLC1   50000 perm   12 sec   (4130 perm/sec)   p_kst 4.632000e-02   p_cons 7.204000e-02   p_joint 2.818000e-02

Joint ci ratio: 1.176490e-01	ci left: 1.709687e-02	ci right 1.925010e-02	k: 1089	n:60000
Cons ci ratio: 5.767662e-02	ci left: 6.941788e-02	ci right 7.355702e-02	k: 4288	n:60000
KS ci ratio: 7.238554e-02	ci left: 4.491069e-02	ci right 4.830001e-02	k: 2795	n:60000
CYLC1   60000 perm   15 sec   (4030 perm/sec)   p_kst 4.658333e-02   p_cons 7.146667e-02   p_joint 1.815000e-02

Joint ci ratio: 7.781363e-02	ci left: 3.362269e-02	ci right 3.635889e-02	k: 2448	n:70000
Cons ci ratio: 4.914564e-02	ci left: 8.126308e-02	ci right 8.537154e-02	k: 5831	n:70000
KS ci ratio: 6.710241e-02	ci left: 4.492371e-02	ci right 4.805688e-02	k: 3253	n:70000
CYLC1   70000 perm   18 sec   (3920 perm/sec)   p_kst 4.647143e-02   p_cons 8.330000e-02   p_joint 3.497143e-02

Outputting figure to mutsig2_images.part000000000046/CYLC1.8_1976_70000_0.046471_0.0833_0.034971.png
                gene_name: CYLC1
               theta_stop: 0.078 
                    nperm: 70000 
                     p_ks: 0.046 
        ci_ks_bounds_left: 0.045 
       ci_ks_bounds_right: 0.048 
                   p_cons: 0.083 
      ci_cons_bounds_left: 0.081 
     ci_cons_bounds_right: 0.085 
                  p_joint: 0.035 
     ci_joint_bounds_left: 0.034 
    ci_joint_bounds_right: 0.036 

Current progress: 5 percent done.
CYLD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.674720e-02	ci left: 6.730726e-01	ci right 6.914211e-01	k: 6823	n:10000
Cons ci ratio: 6.766072e-02	ci left: 2.427230e-01	ci right 2.598221e-01	k: 2512	n:10000
KS ci ratio: 2.934637e-02	ci left: 6.313068e-01	ci right 6.502111e-01	k: 6408	n:10000
CYLD   10000 perm   2 sec   (4006 perm/sec)   p_kst 6.408000e-01   p_cons 2.512000e-01   p_joint 6.823000e-01

Outputting figure to mutsig2_images.part000000000046/CYLD.8_2939_10000_0.6408_0.2512_0.6823.png
                gene_name: CYLD
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 7 percent done.
CYP2C19
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.170407e-02	ci left: 5.948373e-01	ci right 6.141018e-01	k: 6045	n:10000
Cons ci ratio: 2.961459e-02	ci left: 6.270843e-01	ci right 6.460361e-01	k: 6366	n:10000
KS ci ratio: 4.495000e-02	ci left: 4.221625e-01	ci right 4.416772e-01	k: 4319	n:10000
CYP2C19   10000 perm   2 sec   (4765 perm/sec)   p_kst 4.319000e-01   p_cons 6.366000e-01   p_joint 6.045000e-01

Outputting figure to mutsig2_images.part000000000046/CYP2C19.7_1508_10000_0.4319_0.6366_0.6045.png
                gene_name: CYP2C19
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 9 percent done.
CYP11B2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.416829e-01	ci left: 6.604181e-02	ci right 7.620974e-02	k: 710	n:10000
Cons ci ratio: 1.123029e-01	ci left: 1.024689e-01	ci right 1.147601e-01	k: 1085	n:10000
KS ci ratio: 1.223415e-01	ci left: 8.737675e-02	ci right 9.886154e-02	k: 930	n:10000
CYP11B2   10000 perm   2 sec   (5798 perm/sec)   p_kst 9.300000e-02   p_cons 1.085000e-01   p_joint 7.100000e-02

Joint ci ratio: 9.506608e-02	ci left: 7.461336e-02	ci right 8.210977e-02	k: 1566	n:20000
Cons ci ratio: 7.434114e-02	ci left: 1.174943e-01	ci right 1.266159e-01	k: 2440	n:20000
KS ci ratio: 8.352586e-02	ci left: 9.504152e-02	ci right 1.033754e-01	k: 1983	n:20000
CYP11B2   20000 perm   4 sec   (5112 perm/sec)   p_kst 9.915000e-02   p_cons 1.220000e-01   p_joint 7.830000e-02

Outputting figure to mutsig2_images.part000000000046/CYP11B2.7_1548_20000_0.09915_0.122_0.0783.png
                gene_name: CYP11B2
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.099 
        ci_ks_bounds_left: 0.095 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.078 
     ci_joint_bounds_left: 0.075 
    ci_joint_bounds_right: 0.082 

Current progress: 11 percent done.
CYP1A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.910019e-02	ci left: 4.913511e-01	ci right 5.110482e-01	k: 5012	n:10000
Cons ci ratio: 4.337237e-03	ci left: 9.856678e-01	ci right 9.900411e-01	k: 9880	n:10000
KS ci ratio: 6.023687e-02	ci left: 2.884508e-01	ci right 3.064673e-01	k: 2974	n:10000
CYP1A1   10000 perm   2 sec   (5610 perm/sec)   p_kst 2.974000e-01   p_cons 9.880000e-01   p_joint 5.012000e-01

Outputting figure to mutsig2_images.part000000000046/CYP1A1.7_1563_10000_0.2974_0.988_0.5012.png
                gene_name: CYP1A1
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 14 percent done.
CYBB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.137052e-02	ci left: 4.631735e-01	ci right 4.828422e-01	k: 4730	n:10000
Cons ci ratio: 8.317272e-03	ci left: 9.528388e-01	ci right 9.608923e-01	k: 9570	n:10000
KS ci ratio: 6.913041e-02	ci left: 2.348172e-01	ci right 2.517326e-01	k: 2432	n:10000
CYBB   10000 perm   2 sec   (5855 perm/sec)   p_kst 2.432000e-01   p_cons 9.570000e-01   p_joint 4.730000e-01

Outputting figure to mutsig2_images.part000000000046/CYBB.6_1765_10000_0.2432_0.957_0.473.png
                gene_name: CYBB
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 16 percent done.
CYFIP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.403543e-02	ci left: 1.711374e-01	ci right 1.862502e-01	k: 1786	n:10000
Cons ci ratio: 4.296414e-02	ci left: 4.444059e-01	ci right 4.640208e-01	k: 4542	n:10000
KS ci ratio: 8.661395e-02	ci left: 1.625864e-01	ci right 1.774064e-01	k: 1699	n:10000
CYFIP2   10000 perm   2 sec   (5113 perm/sec)   p_kst 1.699000e-01   p_cons 4.542000e-01   p_joint 1.786000e-01

Outputting figure to mutsig2_images.part000000000046/CYFIP2.6_3882_10000_0.1699_0.4542_0.1786.png
                gene_name: CYFIP2
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.19 

Current progress: 18 percent done.
CYC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.779877e-02	ci left: 1.588536e-01	ci right 1.735414e-01	k: 1661	n:10000
Cons ci ratio: 1.214801e-01	ci left: 8.854359e-02	ci right 1.000940e-01	k: 942	n:10000
KS ci ratio: 7.031466e-02	ci left: 2.286929e-01	ci right 2.454605e-01	k: 2370	n:10000
CYC1   10000 perm   2 sec   (5860 perm/sec)   p_kst 2.370000e-01   p_cons 9.420000e-02   p_joint 1.661000e-01

Joint ci ratio: 7.031306e-02	ci left: 1.297506e-01	ci right 1.392560e-01	k: 2689	n:20000
Cons ci ratio: 8.562569e-02	ci left: 9.077426e-02	ci right 9.894396e-02	k: 1896	n:20000
KS ci ratio: 4.963812e-02	ci left: 2.317645e-01	ci right 2.436119e-01	k: 4753	n:20000
CYC1   20000 perm   4 sec   (5276 perm/sec)   p_kst 2.376500e-01   p_cons 9.480000e-02   p_joint 1.344500e-01

Outputting figure to mutsig2_images.part000000000046/CYC1.5_1006_20000_0.23765_0.0948_0.13445.png
                gene_name: CYC1
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.095 
      ci_cons_bounds_left: 0.091 
     ci_cons_bounds_right: 0.099 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 20 percent done.
CYFIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.078946e-01	ci left: 1.102743e-01	ci right 1.229500e-01	k: 1165	n:10000
Cons ci ratio: 1.928182e-02	ci left: 7.972992e-01	ci right 8.129226e-01	k: 8052	n:10000
KS ci ratio: 1.396839e-01	ci left: 6.787957e-02	ci right 7.817082e-02	k: 729	n:10000
CYFIP1   10000 perm   2 sec   (4744 perm/sec)   p_kst 7.290000e-02   p_cons 8.052000e-01   p_joint 1.165000e-01

Joint ci ratio: 5.833271e-02	ci left: 1.787993e-01	ci right 1.895926e-01	k: 3683	n:20000
Cons ci ratio: 1.359053e-02	ci left: 8.006525e-01	ci right 8.116583e-01	k: 16124	n:20000
KS ci ratio: 9.311361e-02	ci left: 7.759738e-02	ci right 8.522484e-02	k: 1627	n:20000
CYFIP1   20000 perm   5 sec   (4308 perm/sec)   p_kst 8.135000e-02   p_cons 8.062000e-01   p_joint 1.841500e-01

Outputting figure to mutsig2_images.part000000000046/CYFIP1.5_4263_20000_0.08135_0.8062_0.18415.png
                gene_name: CYFIP1
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.081 
        ci_ks_bounds_left: 0.078 
       ci_ks_bounds_right: 0.085 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 23 percent done.
CYP2A6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.611998e-02	ci left: 6.833505e-01	ci right 7.015373e-01	k: 6925	n:10000
KS ci ratio: 3.016730e-02	ci left: 6.184406e-01	ci right 6.374848e-01	k: 6280	n:10000
CYP2A6   10000 perm   2 sec   (5941 perm/sec)   p_kst 6.280000e-01   p_cons 6.925000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000046/CYP2A6.5_1521_10000_0.628_0.6925_1.png
                gene_name: CYP2A6
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 25 percent done.
CYP4F12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.573434e-02	ci left: 6.897011e-01	ci right 7.077830e-01	k: 6988	n:10000
Cons ci ratio: 6.035235e-02	ci left: 2.876580e-01	ci right 3.056606e-01	k: 2966	n:10000
KS ci ratio: 2.214301e-02	ci left: 7.495823e-01	ci right 7.664671e-01	k: 7581	n:10000
CYP4F12   10000 perm   2 sec   (5818 perm/sec)   p_kst 7.581000e-01   p_cons 2.966000e-01   p_joint 6.988000e-01

Outputting figure to mutsig2_images.part000000000046/CYP4F12.5_1623_10000_0.7581_0.2966_0.6988.png
                gene_name: CYP4F12
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 27 percent done.
CYP7A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.141594e-02	ci left: 3.580403e-01	ci right 3.770370e-01	k: 3675	n:10000
Cons ci ratio: 6.356810e-02	ci left: 2.666610e-01	ci right 2.842700e-01	k: 2754	n:10000
KS ci ratio: 5.539147e-02	ci left: 3.243584e-01	ci right 3.429386e-01	k: 3336	n:10000
CYP7A1   10000 perm   2 sec   (5924 perm/sec)   p_kst 3.336000e-01   p_cons 2.754000e-01   p_joint 3.675000e-01

Outputting figure to mutsig2_images.part000000000046/CYP7A1.5_1539_10000_0.3336_0.2754_0.3675.png
                gene_name: CYP7A1
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 30 percent done.
CYLC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.545313e-02	ci left: 5.401859e-01	ci right 5.597849e-01	k: 5500	n:10000
Cons ci ratio: 3.585304e-03	ci left: 9.898317e-01	ci right 9.934731e-01	k: 9918	n:10000
KS ci ratio: 4.725902e-02	ci left: 3.978474e-01	ci right 4.172065e-01	k: 4075	n:10000
CYLC2   10000 perm   2 sec   (6167 perm/sec)   p_kst 4.075000e-01   p_cons 9.918000e-01   p_joint 5.500000e-01

Outputting figure to mutsig2_images.part000000000046/CYLC2.4_1067_10000_0.4075_0.9918_0.55.png
                gene_name: CYLC2
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 32 percent done.
CYP19A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.169932e-03	ci left: 9.918346e-01	ci right 9.950678e-01	k: 9936	n:10000
KS ci ratio: 1.520250e-02	ci left: 8.625359e-01	ci right 8.758482e-01	k: 8693	n:10000
CYP19A1   10000 perm   2 sec   (6169 perm/sec)   p_kst 8.693000e-01   p_cons 9.936000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000046/CYP19A1.4_1548_10000_0.8693_0.9936_1.png
                gene_name: CYP19A1
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 1.00 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 34 percent done.
CYP26B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.686029e-02	ci left: 1.618004e-01	ci right 1.765928e-01	k: 1691	n:10000
Cons ci ratio: 7.505740e-02	ci left: 2.061931e-01	ci right 2.223737e-01	k: 2142	n:10000
KS ci ratio: 8.925190e-02	ci left: 1.544350e-01	ci right 1.689626e-01	k: 1616	n:10000
CYP26B1   10000 perm   2 sec   (6266 perm/sec)   p_kst 1.616000e-01   p_cons 2.142000e-01   p_joint 1.691000e-01

Outputting figure to mutsig2_images.part000000000046/CYP26B1.4_1563_10000_0.1616_0.2142_0.1691.png
                gene_name: CYP26B1
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.18 

Current progress: 36 percent done.
CYP2B6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.772759e-03	ci left: 9.676262e-01	ci right 9.742956e-01	k: 9711	n:10000
KS ci ratio: 1.352295e-02	ci left: 8.874939e-01	ci right 8.996757e-01	k: 8937	n:10000
CYP2B6   10000 perm   2 sec   (6330 perm/sec)   p_kst 8.937000e-01   p_cons 9.711000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000046/CYP2B6.4_1512_10000_0.8937_0.9711_1.png
                gene_name: CYP2B6
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 39 percent done.
CYP3A43
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.171733e-02	ci left: 5.946365e-01	ci right 6.139027e-01	k: 6043	n:10000
Cons ci ratio: 6.233328e-02	ci left: 2.744825e-01	ci right 2.922438e-01	k: 2833	n:10000
KS ci ratio: 3.839503e-02	ci left: 5.004505e-01	ci right 5.201435e-01	k: 5103	n:10000
CYP3A43   10000 perm   2 sec   (5827 perm/sec)   p_kst 5.103000e-01   p_cons 2.833000e-01   p_joint 6.043000e-01

Outputting figure to mutsig2_images.part000000000046/CYP3A43.4_1567_10000_0.5103_0.2833_0.6043.png
                gene_name: CYP3A43
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 41 percent done.
CYP4V2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.455437e-02	ci left: 1.693677e-01	ci right 1.844210e-01	k: 1768	n:10000
Cons ci ratio: 4.454932e-02	ci left: 4.265498e-01	ci right 4.460873e-01	k: 4363	n:10000
KS ci ratio: 1.209147e-01	ci left: 8.932164e-02	ci right 1.009155e-01	k: 950	n:10000
CYP4V2   10000 perm   2 sec   (5762 perm/sec)   p_kst 9.500000e-02   p_cons 4.363000e-01   p_joint 1.768000e-01

Joint ci ratio: 7.063193e-02	ci left: 1.287164e-01	ci right 1.381905e-01	k: 2668	n:20000
Cons ci ratio: 3.135703e-02	ci left: 4.317073e-01	ci right 4.455106e-01	k: 8772	n:20000
KS ci ratio: 8.500824e-02	ci left: 9.200023e-02	ci right 1.002176e-01	k: 1921	n:20000
CYP4V2   20000 perm   4 sec   (5190 perm/sec)   p_kst 9.605000e-02   p_cons 4.386000e-01   p_joint 1.334000e-01

Outputting figure to mutsig2_images.part000000000046/CYP4V2.4_1622_20000_0.09605_0.4386_0.1334.png
                gene_name: CYP4V2
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.096 
        ci_ks_bounds_left: 0.092 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 43 percent done.
CYP7B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.389968e-02	ci left: 7.201726e-01	ci right 7.376939e-01	k: 7290	n:10000
Cons ci ratio: 1.401569e-02	ci left: 8.803248e-01	ci right 8.928490e-01	k: 8867	n:10000
KS ci ratio: 3.294486e-02	ci left: 5.762723e-01	ci right 5.956776e-01	k: 5860	n:10000
CYP7B1   10000 perm   2 sec   (5505 perm/sec)   p_kst 5.860000e-01   p_cons 8.867000e-01   p_joint 7.290000e-01

Outputting figure to mutsig2_images.part000000000046/CYP7B1.4_1545_10000_0.586_0.8867_0.729.png
                gene_name: CYP7B1
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 45 percent done.
CYB5R4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.259752e-02	ci left: 3.476023e-01	ci right 3.664811e-01	k: 3570	n:10000
Cons ci ratio: 7.618985e-02	ci left: 2.012637e-01	ci right 2.173060e-01	k: 2092	n:10000
KS ci ratio: 3.777008e-02	ci left: 5.086527e-01	ci right 5.283365e-01	k: 5185	n:10000
CYB5R4   10000 perm   2 sec   (6030 perm/sec)   p_kst 5.185000e-01   p_cons 2.092000e-01   p_joint 3.570000e-01

Outputting figure to mutsig2_images.part000000000046/CYB5R4.3_1630_10000_0.5185_0.2092_0.357.png
                gene_name: CYB5R4
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 48 percent done.
CYP24A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.651369e-02	ci left: 4.055180e-01	ci right 4.249314e-01	k: 4152	n:10000
Cons ci ratio: 1.344875e-01	ci left: 7.301117e-02	ci right 8.363602e-02	k: 782	n:10000
KS ci ratio: 6.029456e-02	ci left: 2.880544e-01	ci right 3.060640e-01	k: 2970	n:10000
CYP24A1   10000 perm   2 sec   (6302 perm/sec)   p_kst 2.970000e-01   p_cons 7.820000e-02   p_joint 4.152000e-01

Joint ci ratio: 5.498154e-02	ci left: 1.970481e-01	ci right 2.082385e-01	k: 4052	n:20000
Cons ci ratio: 9.616914e-02	ci left: 7.299974e-02	ci right 8.042388e-02	k: 1533	n:20000
KS ci ratio: 4.161119e-02	ci left: 3.009092e-01	ci right 3.137469e-01	k: 6146	n:20000
CYP24A1   20000 perm   4 sec   (5568 perm/sec)   p_kst 3.073000e-01   p_cons 7.665000e-02   p_joint 2.026000e-01

Outputting figure to mutsig2_images.part000000000046/CYP24A1.3_1589_20000_0.3073_0.07665_0.2026.png
                gene_name: CYP24A1
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.077 
      ci_cons_bounds_left: 0.073 
     ci_cons_bounds_right: 0.080 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 50 percent done.
CYP2C9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.022247e-02	ci left: 2.885499e-01	ci right 3.065682e-01	k: 2975	n:10000
Cons ci ratio: 9.679164e-02	ci left: 1.340383e-01	ci right 1.477716e-01	k: 1408	n:10000
KS ci ratio: 3.937479e-02	ci left: 4.878522e-01	ci right 5.075492e-01	k: 4977	n:10000
CYP2C9   10000 perm   2 sec   (6140 perm/sec)   p_kst 4.977000e-01   p_cons 1.408000e-01   p_joint 2.975000e-01

Outputting figure to mutsig2_images.part000000000046/CYP2C9.3_1509_10000_0.4977_0.1408_0.2975.png
                gene_name: CYP2C9
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 52 percent done.
CYP2D6
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.679846e-02	ci left: 5.216617e-01	ci right 5.413200e-01	k: 5315	n:10000
Cons ci ratio: 4.255920e-02	ci left: 4.490965e-01	ci right 4.687274e-01	k: 4589	n:10000
KS ci ratio: 5.893690e-02	ci left: 2.975703e-01	ci right 3.157424e-01	k: 3066	n:10000
CYP2D6   10000 perm   2 sec   (6443 perm/sec)   p_kst 3.066000e-01   p_cons 4.589000e-01   p_joint 5.315000e-01

Outputting figure to mutsig2_images.part000000000046/CYP2D6.2_1530_10000_0.3066_0.4589_0.5315.png
                gene_name: CYP2D6
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 55 percent done.
CYP2F1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.769452e-02	ci left: 5.096532e-01	ci right 5.293355e-01	k: 5195	n:10000
Cons ci ratio: 5.160444e-02	ci left: 3.563500e-01	ci right 3.753282e-01	k: 3658	n:10000
KS ci ratio: 4.139542e-02	ci left: 4.628739e-01	ci right 4.825420e-01	k: 4727	n:10000
CYP2F1   10000 perm   2 sec   (6302 perm/sec)   p_kst 4.727000e-01   p_cons 3.658000e-01   p_joint 5.195000e-01

Outputting figure to mutsig2_images.part000000000046/CYP2F1.3_1512_10000_0.4727_0.3658_0.5195.png
                gene_name: CYP2F1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 57 percent done.
CYP4B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.182965e-02	ci left: 4.576816e-01	ci right 4.773374e-01	k: 4675	n:10000
Cons ci ratio: 9.503224e-02	ci left: 1.384471e-01	ci right 1.523602e-01	k: 1453	n:10000
KS ci ratio: 3.937479e-02	ci left: 4.878522e-01	ci right 5.075492e-01	k: 4977	n:10000
CYP4B1   10000 perm   2 sec   (5711 perm/sec)   p_kst 4.977000e-01   p_cons 1.453000e-01   p_joint 4.675000e-01

Outputting figure to mutsig2_images.part000000000046/CYP4B1.3_1587_10000_0.4977_0.1453_0.4675.png
                gene_name: CYP4B1
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 59 percent done.
CYP4F11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.085669e-02	ci left: 3.631119e-01	ci right 3.821624e-01	k: 3726	n:10000
Cons ci ratio: 2.928267e-02	ci left: 6.323123e-01	ci right 6.512050e-01	k: 6418	n:10000
KS ci ratio: 9.584355e-02	ci left: 1.363893e-01	ci right 1.502192e-01	k: 1432	n:10000
CYP4F11   10000 perm   2 sec   (6161 perm/sec)   p_kst 1.432000e-01   p_cons 6.418000e-01   p_joint 3.726000e-01

Outputting figure to mutsig2_images.part000000000046/CYP4F11.3_1623_10000_0.1432_0.6418_0.3726.png
                gene_name: CYP4F11
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 61 percent done.
CYP4F2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.669974e-02	ci left: 3.141351e-01	ci right 3.325679e-01	k: 3233	n:10000
Cons ci ratio: 8.438058e-02	ci left: 1.699576e-01	ci right 1.850308e-01	k: 1774	n:10000
KS ci ratio: 4.645628e-02	ci left: 4.061158e-01	ci right 4.255332e-01	k: 4158	n:10000
CYP4F2   10000 perm   2 sec   (6273 perm/sec)   p_kst 4.158000e-01   p_cons 1.774000e-01   p_joint 3.233000e-01

Outputting figure to mutsig2_images.part000000000046/CYP4F2.3_1611_10000_0.4158_0.1774_0.3233.png
                gene_name: CYP4F2
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 64 percent done.
CYP4F8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.756954e-03	ci left: 9.584845e-01	ci right 9.660432e-01	k: 9624	n:10000
Cons ci ratio: 1.461527e-02	ci left: 8.714250e-01	ci right 8.843539e-01	k: 8780	n:10000
KS ci ratio: 4.646584e-02	ci left: 4.060162e-01	ci right 4.254329e-01	k: 4157	n:10000
CYP4F8   10000 perm   2 sec   (6319 perm/sec)   p_kst 4.157000e-01   p_cons 8.780000e-01   p_joint 9.624000e-01

Outputting figure to mutsig2_images.part000000000046/CYP4F8.3_1610_10000_0.4157_0.878_0.9624.png
                gene_name: CYP4F8
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 66 percent done.
CYTSA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.355274e-02	ci left: 5.673461e-01	ci right 5.868090e-01	k: 5771	n:10000
Cons ci ratio: 6.670348e-02	ci left: 2.480616e-01	ci right 2.652804e-01	k: 2566	n:10000
KS ci ratio: 3.432174e-02	ci left: 5.562179e-01	ci right 5.757437e-01	k: 5660	n:10000
CYTSA   10000 perm   2 sec   (5391 perm/sec)   p_kst 5.660000e-01   p_cons 2.566000e-01   p_joint 5.771000e-01

Outputting figure to mutsig2_images.part000000000046/CYTSA.3_3414_10000_0.566_0.2566_0.5771.png
                gene_name: CYTSA
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 68 percent done.
CYB5R2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.359049e-01	ci left: 7.155808e-02	ci right 8.209001e-02	k: 767	n:10000
Cons ci ratio: 2.429909e-02	ci left: 7.135091e-01	ci right 7.311612e-01	k: 7224	n:10000
KS ci ratio: 3.350785e-01	ci left: 1.123901e-02	ci right 1.585081e-02	k: 134	n:10000
CYB5R2   10000 perm   1 sec   (7083 perm/sec)   p_kst 1.340000e-02   p_cons 7.224000e-01   p_joint 7.670000e-02

Joint ci ratio: 1.441613e-01	ci left: 3.307475e-02	ci right 3.826138e-02	k: 712	n:20000
Cons ci ratio: 1.730666e-02	ci left: 7.132173e-01	ci right 7.257188e-01	k: 14390	n:20000
KS ci ratio: 2.468626e-01	ci left: 1.091252e-02	ci right 1.403162e-02	k: 248	n:20000
CYB5R2   20000 perm   3 sec   (6217 perm/sec)   p_kst 1.240000e-02   p_cons 7.195000e-01   p_joint 3.560000e-02

Joint ci ratio: 1.017963e-01	ci left: 4.469747e-02	ci right 4.952406e-02	k: 1412	n:30000
Cons ci ratio: 1.399098e-02	ci left: 7.184006e-01	ci right 7.285560e-01	k: 21705	n:30000
KS ci ratio: 2.030836e-01	ci left: 1.102017e-02	ci right 1.354227e-02	k: 367	n:30000
CYB5R2   30000 perm   5 sec   (5835 perm/sec)   p_kst 1.223333e-02   p_cons 7.235000e-01   p_joint 4.706667e-02

Joint ci ratio: 6.872084e-02	ci left: 7.263406e-02	ci right 7.782781e-02	k: 3008	n:40000
Cons ci ratio: 1.207798e-02	ci left: 7.203694e-01	ci right 7.291479e-01	k: 28991	n:40000
KS ci ratio: 1.742065e-01	ci left: 1.141029e-02	ci right 1.361132e-02	k: 499	n:40000
CYB5R2   40000 perm   7 sec   (5633 perm/sec)   p_kst 1.247500e-02   p_cons 7.247750e-01   p_joint 7.520000e-02

Joint ci ratio: 6.459567e-02	ci left: 6.637978e-02	ci right 7.083046e-02	k: 3429	n:50000
Cons ci ratio: 1.082117e-02	ci left: 7.201593e-01	ci right 7.280147e-01	k: 36205	n:50000
KS ci ratio: 1.581376e-01	ci left: 1.117930e-02	ci right 1.311796e-02	k: 606	n:50000
CYB5R2   50000 perm   9 sec   (5462 perm/sec)   p_kst 1.212000e-02   p_cons 7.241000e-01   p_joint 6.858000e-02

Joint ci ratio: 5.910647e-02	ci left: 6.627768e-02	ci right 7.033086e-02	k: 4097	n:60000
Cons ci ratio: 9.871343e-03	ci left: 7.207889e-01	ci right 7.279560e-01	k: 43463	n:60000
KS ci ratio: 1.433076e-01	ci left: 1.143338e-02	ci right 1.321426e-02	k: 738	n:60000
CYB5R2   60000 perm   11 sec   (5333 perm/sec)   p_kst 1.230000e-02   p_cons 7.243833e-01   p_joint 6.828333e-02

Joint ci ratio: 5.495679e-02	ci left: 6.589201e-02	ci right 6.962963e-02	k: 4742	n:70000
Cons ci ratio: 9.129233e-03	ci left: 7.214894e-01	ci right 7.281205e-01	k: 50737	n:70000
KS ci ratio: 1.322250e-01	ci left: 1.157951e-02	ci right 1.323270e-02	k: 867	n:70000
CYB5R2   70000 perm   13 sec   (5217 perm/sec)   p_kst 1.238571e-02   p_cons 7.248143e-01   p_joint 6.774286e-02

Joint ci ratio: 5.118780e-02	ci left: 6.654904e-02	ci right 7.005735e-02	k: 5463	n:80000
Cons ci ratio: 8.532703e-03	ci left: 7.220295e-01	ci right 7.282292e-01	k: 58011	n:80000
KS ci ratio: 1.223803e-01	ci left: 1.188703e-02	ci right 1.344861e-02	k: 1012	n:80000
CYB5R2   80000 perm   16 sec   (5104 perm/sec)   p_kst 1.265000e-02   p_cons 7.251375e-01   p_joint 6.828750e-02

Joint ci ratio: 4.994237e-02	ci left: 6.246440e-02	ci right 6.567488e-02	k: 5765	n:90000
Cons ci ratio: 8.039641e-03	ci left: 7.224602e-01	ci right 7.283030e-01	k: 65285	n:90000
KS ci ratio: 1.157742e-01	ci left: 1.184909e-02	ci right 1.331591e-02	k: 1131	n:90000
CYB5R2   90000 perm   18 sec   (4999 perm/sec)   p_kst 1.256667e-02   p_cons 7.253889e-01   p_joint 6.405556e-02

Joint ci ratio: 4.566194e-02	ci left: 6.707054e-02	ci right 7.021454e-02	k: 6863	n:100000
Cons ci ratio: 7.629926e-03	ci left: 7.224618e-01	ci right 7.280052e-01	k: 72524	n:100000
KS ci ratio: 1.099562e-01	ci left: 1.185947e-02	ci right 1.324902e-02	k: 1254	n:100000
CYB5R2   100000 perm   20 sec   (4906 perm/sec)   p_kst 1.254000e-02   p_cons 7.252400e-01   p_joint 6.863000e-02

Joint ci ratio: 4.351655e-02	ci left: 6.720307e-02	ci right 7.020154e-02	k: 7556	n:110000
Cons ci ratio: 7.261146e-03	ci left: 7.233447e-01	ci right 7.286252e-01	k: 79859	n:110000
KS ci ratio: 1.049740e-01	ci left: 1.186063e-02	ci right 1.318344e-02	k: 1376	n:110000
CYB5R2   110000 perm   23 sec   (4818 perm/sec)   p_kst 1.250909e-02   p_cons 7.259909e-01   p_joint 6.869091e-02

Joint ci ratio: 4.161247e-02	ci left: 6.742368e-02	ci right 7.029719e-02	k: 8262	n:120000
Cons ci ratio: 6.959142e-03	ci left: 7.230491e-01	ci right 7.281067e-01	k: 87070	n:120000
KS ci ratio: 1.005790e-01	ci left: 1.187090e-02	ci right 1.313616e-02	k: 1499	n:120000
CYB5R2   120000 perm   25 sec   (4733 perm/sec)   p_kst 1.249167e-02   p_cons 7.255833e-01   p_joint 6.885000e-02

Joint ci ratio: 3.997419e-02	ci left: 6.749845e-02	ci right 7.025928e-02	k: 8953	n:130000
Cons ci ratio: 6.679005e-03	ci left: 7.235744e-01	ci right 7.284309e-01	k: 94381	n:130000
KS ci ratio: 9.615495e-02	ci left: 1.201573e-02	ci right 1.323692e-02	k: 1640	n:130000
CYB5R2   130000 perm   28 sec   (4646 perm/sec)   p_kst 1.261538e-02   p_cons 7.260077e-01   p_joint 6.886923e-02

Outputting figure to mutsig2_images.part000000000046/CYB5R2.2_863_130000_0.012615_0.72601_0.068869.png
                gene_name: CYB5R2
               theta_stop: 0.096 
                    nperm: 130000 
                     p_ks: 0.013 
        ci_ks_bounds_left: 0.012 
       ci_ks_bounds_right: 0.013 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.069 
     ci_joint_bounds_left: 0.067 
    ci_joint_bounds_right: 0.070 

Current progress: 70 percent done.
CYP11A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.263811e-02	ci left: 9.000087e-01	ci right 9.115537e-01	k: 9059	n:10000
Cons ci ratio: 3.451772e-02	ci left: 5.534115e-01	ci right 5.729516e-01	k: 5632	n:10000
KS ci ratio: 3.860295e-02	ci left: 4.977503e-01	ci right 5.174453e-01	k: 5076	n:10000
CYP11A1   10000 perm   2 sec   (6569 perm/sec)   p_kst 5.076000e-01   p_cons 5.632000e-01   p_joint 9.059000e-01

Outputting figure to mutsig2_images.part000000000046/CYP11A1.2_1602_10000_0.5076_0.5632_0.9059.png
                gene_name: CYP11A1
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 73 percent done.
CYP17A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.007830e-02	ci left: 1.855021e-01	ci right 2.010770e-01	k: 1932	n:10000
Cons ci ratio: 2.897772e-02	ci left: 6.371392e-01	ci right 6.559753e-01	k: 6466	n:10000
KS ci ratio: 1.068598e-01	ci left: 1.122272e-01	ci right 1.249959e-01	k: 1185	n:10000
CYP17A1   10000 perm   2 sec   (6568 perm/sec)   p_kst 1.185000e-01   p_cons 6.466000e-01   p_joint 1.932000e-01

Joint ci ratio: 2.729295e-02	ci left: 5.007456e-01	ci right 5.146522e-01	k: 10154	n:20000
Cons ci ratio: 2.024079e-02	ci left: 6.455526e-01	ci right 6.588032e-01	k: 13044	n:20000
KS ci ratio: 7.704429e-02	ci left: 1.101675e-01	ci right 1.190449e-01	k: 2291	n:20000
CYP17A1   20000 perm   3 sec   (5802 perm/sec)   p_kst 1.145500e-01   p_cons 6.522000e-01   p_joint 5.077000e-01

Outputting figure to mutsig2_images.part000000000046/CYP17A1.2_1559_20000_0.11455_0.6522_0.5077.png
                gene_name: CYP17A1
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.51 

Current progress: 75 percent done.
CYP21A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.892670e-02	ci left: 1.289466e-01	ci right 1.424664e-01	k: 1356	n:10000
Cons ci ratio: 7.800821e-02	ci left: 1.936760e-01	ci right 2.094982e-01	k: 2015	n:10000
KS ci ratio: 9.062615e-02	ci left: 1.504109e-01	ci right 1.647892e-01	k: 1575	n:10000
CYP21A2   10000 perm   2 sec   (5750 perm/sec)   p_kst 1.575000e-01   p_cons 2.015000e-01   p_joint 1.356000e-01

Outputting figure to mutsig2_images.part000000000046/CYP21A2.2_3049_10000_0.1575_0.2015_0.1356.png
                gene_name: CYP21A2
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 77 percent done.
CYP27C1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.036337e-02	ci left: 7.793491e-01	ci right 7.954831e-01	k: 7875	n:10000
Cons ci ratio: 3.989796e-02	ci left: 4.812555e-01	ci right 5.009497e-01	k: 4911	n:10000
KS ci ratio: 5.682955e-02	ci left: 3.131428e-01	ci right 3.315608e-01	k: 3223	n:10000
CYP27C1   10000 perm   2 sec   (6480 perm/sec)   p_kst 3.223000e-01   p_cons 4.911000e-01   p_joint 7.875000e-01

Outputting figure to mutsig2_images.part000000000046/CYP27C1.2_1147_10000_0.3223_0.4911_0.7875.png
                gene_name: CYP27C1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 80 percent done.
CYP2C18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.791351e-02	ci left: 3.050079e-01	ci right 3.233005e-01	k: 3141	n:10000
Cons ci ratio: 5.798077e-02	ci left: 3.045120e-01	ci right 3.227967e-01	k: 3136	n:10000
KS ci ratio: 3.353899e-02	ci left: 5.675467e-01	ci right 5.870083e-01	k: 5773	n:10000
CYP2C18   10000 perm   1 sec   (6673 perm/sec)   p_kst 5.773000e-01   p_cons 3.136000e-01   p_joint 3.141000e-01

Outputting figure to mutsig2_images.part000000000046/CYP2C18.2_1509_10000_0.5773_0.3136_0.3141.png
                gene_name: CYP2C18
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 82 percent done.
CYP2C8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.263779e-02	ci left: 7.412900e-01	ci right 7.583643e-01	k: 7499	n:10000
Cons ci ratio: 4.542946e-02	ci left: 4.169786e-01	ci right 4.364641e-01	k: 4267	n:10000
KS ci ratio: 4.017026e-02	ci left: 4.778579e-01	ci right 4.975492e-01	k: 4877	n:10000
CYP2C8   10000 perm   1 sec   (6709 perm/sec)   p_kst 4.877000e-01   p_cons 4.267000e-01   p_joint 7.499000e-01

Outputting figure to mutsig2_images.part000000000046/CYP2C8.2_1509_10000_0.4877_0.4267_0.7499.png
                gene_name: CYP2C8
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 84 percent done.
CYP46A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.492393e-02	ci left: 2.067847e-01	ci right 2.229817e-01	k: 2148	n:10000
Cons ci ratio: 4.938832e-02	ci left: 3.768407e-01	ci right 3.960255e-01	k: 3864	n:10000
KS ci ratio: 2.292716e-01	ci left: 2.513779e-02	ci right 3.174074e-02	k: 283	n:10000
CYP46A1   10000 perm   2 sec   (6537 perm/sec)   p_kst 2.830000e-02   p_cons 3.864000e-01   p_joint 2.148000e-01

Joint ci ratio: 4.720395e-02	ci left: 2.503097e-01	ci right 2.624612e-01	k: 5127	n:20000
Cons ci ratio: 3.485641e-02	ci left: 3.805904e-01	ci right 3.941423e-01	k: 7747	n:20000
KS ci ratio: 1.611044e-01	ci left: 2.642978e-02	ci right 3.110856e-02	k: 574	n:20000
CYP46A1   20000 perm   3 sec   (5789 perm/sec)   p_kst 2.870000e-02   p_cons 3.873500e-01   p_joint 2.563500e-01

Joint ci ratio: 4.371173e-02	ci left: 2.067581e-01	ci right 2.160312e-01	k: 6341	n:30000
Cons ci ratio: 2.829687e-02	ci left: 3.845746e-01	ci right 3.956467e-01	k: 11703	n:30000
KS ci ratio: 1.320554e-01	ci left: 2.664618e-02	ci right 3.044585e-02	k: 855	n:30000
CYP46A1   30000 perm   5 sec   (5500 perm/sec)   p_kst 2.850000e-02   p_cons 3.901000e-01   p_joint 2.113667e-01

Joint ci ratio: 3.241923e-02	ci left: 2.633158e-01	ci right 2.720180e-01	k: 10706	n:40000
Cons ci ratio: 2.452682e-02	ci left: 3.849165e-01	ci right 3.944996e-01	k: 15588	n:40000
KS ci ratio: 1.150575e-01	ci left: 2.657522e-02	ci right 2.984375e-02	k: 1127	n:40000
CYP46A1   40000 perm   8 sec   (5311 perm/sec)   p_kst 2.817500e-02   p_cons 3.897000e-01   p_joint 2.676500e-01

Joint ci ratio: 2.860645e-02	ci left: 2.690984e-01	ci right 2.769280e-01	k: 13650	n:50000
Cons ci ratio: 2.188335e-02	ci left: 3.865995e-01	ci right 3.951732e-01	k: 19544	n:50000
KS ci ratio: 1.030990e-01	ci left: 2.664942e-02	ci right 2.956571e-02	k: 1404	n:50000
CYP46A1   50000 perm   10 sec   (5142 perm/sec)   p_kst 2.808000e-02   p_cons 3.908800e-01   p_joint 2.730000e-01

Joint ci ratio: 2.932685e-02	ci left: 2.260738e-01	ci right 2.328191e-01	k: 13766	n:60000
Cons ci ratio: 1.988746e-02	ci left: 3.891055e-01	ci right 3.969382e-01	k: 23581	n:60000
KS ci ratio: 9.354691e-02	ci left: 2.710165e-02	ci right 2.977756e-02	k: 1705	n:60000
CYP46A1   60000 perm   12 sec   (5005 perm/sec)   p_kst 2.841667e-02   p_cons 3.930167e-01   p_joint 2.294333e-01

Outputting figure to mutsig2_images.part000000000046/CYP46A1.2_1563_60000_0.028417_0.39302_0.22943.png
                gene_name: CYP46A1
               theta_stop: 0.094 
                    nperm: 60000 
                     p_ks: 0.028 
        ci_ks_bounds_left: 0.027 
       ci_ks_bounds_right: 0.030 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.23 

Current progress: 86 percent done.
CYP4A22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.025626e-02	ci left: 9.310246e-01	ci right 9.407196e-01	k: 9360	n:10000
Cons ci ratio: 3.118285e-02	ci left: 6.027694e-01	ci right 6.219651e-01	k: 6124	n:10000
KS ci ratio: 3.110410e-02	ci left: 6.039745e-01	ci right 6.231593e-01	k: 6136	n:10000
CYP4A22   10000 perm   2 sec   (6426 perm/sec)   p_kst 6.136000e-01   p_cons 6.124000e-01   p_joint 9.360000e-01

Outputting figure to mutsig2_images.part000000000046/CYP4A22.2_1608_10000_0.6136_0.6124_0.936.png
                gene_name: CYP4A22
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 89 percent done.
CYP4F3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.500901e-02	ci left: 7.017023e-01	ci right 7.195748e-01	k: 7107	n:10000
Cons ci ratio: 8.915327e-02	ci left: 1.547295e-01	ci right 1.692679e-01	k: 1619	n:10000
KS ci ratio: 2.228181e-02	ci left: 7.472560e-01	ci right 7.641948e-01	k: 7558	n:10000
CYP4F3   10000 perm   2 sec   (6098 perm/sec)   p_kst 7.558000e-01   p_cons 1.619000e-01   p_joint 7.107000e-01

Outputting figure to mutsig2_images.part000000000046/CYP4F3.2_1611_10000_0.7558_0.1619_0.7107.png
                gene_name: CYP4F3
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 91 percent done.
CYP4X1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.963012e-01	ci left: 1.465041e-02	ci right 1.983629e-02	k: 171	n:10000
Cons ci ratio: 1.254102e-01	ci left: 8.339227e-02	ci right 9.464849e-02	k: 889	n:10000
KS ci ratio: 1.591398e-01	ci left: 5.263174e-02	ci right 6.182831e-02	k: 571	n:10000
CYP4X1   10000 perm   1 sec   (6742 perm/sec)   p_kst 5.710000e-02   p_cons 8.890000e-02   p_joint 1.710000e-02

Joint ci ratio: 1.398453e-01	ci left: 3.515098e-02	ci right 4.048447e-02	k: 755	n:20000
Cons ci ratio: 8.900991e-02	ci left: 8.445180e-02	ci right 9.236834e-02	k: 1767	n:20000
KS ci ratio: 1.123751e-01	ci left: 5.411849e-02	ci right 6.061095e-02	k: 1146	n:20000
CYP4X1   20000 perm   3 sec   (5946 perm/sec)   p_kst 5.730000e-02   p_cons 8.835000e-02   p_joint 3.775000e-02

Joint ci ratio: 1.172259e-01	ci left: 3.382317e-02	ci right 3.806732e-02	k: 1077	n:30000
Cons ci ratio: 7.403225e-02	ci left: 8.229385e-02	ci right 8.865336e-02	k: 2563	n:30000
KS ci ratio: 9.277424e-02	ci left: 5.355507e-02	ci right 5.879796e-02	k: 1684	n:30000
CYP4X1   30000 perm   5 sec   (5653 perm/sec)   p_kst 5.613333e-02   p_cons 8.543333e-02   p_joint 3.590000e-02

Joint ci ratio: 9.386996e-02	ci left: 3.981070e-02	ci right 4.375618e-02	k: 1670	n:40000
Cons ci ratio: 6.367376e-02	ci left: 8.378749e-02	ci right 8.932271e-02	k: 3461	n:40000
KS ci ratio: 8.155728e-02	ci left: 5.236888e-02	ci right 5.684606e-02	k: 2183	n:40000
CYP4X1   40000 perm   7 sec   (5434 perm/sec)   p_kst 5.457500e-02   p_cons 8.652500e-02   p_joint 4.175000e-02

Outputting figure to mutsig2_images.part000000000046/CYP4X1.2_1578_40000_0.054575_0.086525_0.04175.png
                gene_name: CYP4X1
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.055 
        ci_ks_bounds_left: 0.052 
       ci_ks_bounds_right: 0.057 
                   p_cons: 0.087 
      ci_cons_bounds_left: 0.084 
     ci_cons_bounds_right: 0.089 
                  p_joint: 0.042 
     ci_joint_bounds_left: 0.040 
    ci_joint_bounds_right: 0.044 

Current progress: 93 percent done.
CYSLTR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.753382e-02	ci left: 6.602828e-01	ci right 6.788183e-01	k: 6696	n:10000
Cons ci ratio: 6.237935e-02	ci left: 2.741854e-01	ci right 2.919411e-01	k: 2830	n:10000
KS ci ratio: 5.849639e-02	ci left: 3.007434e-01	ci right 3.189675e-01	k: 3098	n:10000
CYSLTR1   10000 perm   1 sec   (6755 perm/sec)   p_kst 3.098000e-01   p_cons 2.830000e-01   p_joint 6.696000e-01

Outputting figure to mutsig2_images.part000000000046/CYSLTR1.2_1018_10000_0.3098_0.283_0.6696.png
                gene_name: CYSLTR1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 95 percent done.
CYTH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.028013e-02	ci left: 2.881535e-01	ci right 3.061648e-01	k: 2971	n:10000
Cons ci ratio: 2.822728e-02	ci left: 6.491105e-01	ci right 6.677971e-01	k: 6585	n:10000
KS ci ratio: 9.499402e-02	ci left: 1.385451e-01	ci right 1.524621e-01	k: 1454	n:10000
CYTH2   10000 perm   1 sec   (6668 perm/sec)   p_kst 1.454000e-01   p_cons 6.585000e-01   p_joint 2.971000e-01

Outputting figure to mutsig2_images.part000000000046/CYTH2.2_1251_10000_0.1454_0.6585_0.2971.png
                gene_name: CYTH2
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 98 percent done.
CYTH3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.145810e-01	ci left: 1.943009e-03	ci right 4.162249e-03	k: 29	n:10000
Cons ci ratio: 4.258860e-01	ci left: 6.616170e-03	ci right 1.027885e-02	k: 83	n:10000
KS ci ratio: 7.450460e-02	ci left: 2.086584e-01	ci right 2.249069e-01	k: 2167	n:10000
CYTH3   10000 perm   1 sec   (6915 perm/sec)   p_kst 2.167000e-01   p_cons 8.300000e-03   p_joint 2.900000e-03

Joint ci ratio: 4.892032e-01	ci left: 2.421370e-03	ci right 4.028444e-03	k: 63	n:20000
Cons ci ratio: 3.067269e-01	ci left: 6.858491e-03	ci right 9.387653e-03	k: 161	n:20000
KS ci ratio: 5.172485e-02	ci left: 2.172962e-01	ci right 2.288844e-01	k: 4461	n:20000
CYTH3   20000 perm   3 sec   (6100 perm/sec)   p_kst 2.230500e-01   p_cons 8.050000e-03   p_joint 3.150000e-03

Joint ci ratio: 3.556384e-01	ci left: 3.317477e-03	ci right 4.781146e-03	k: 120	n:30000
Cons ci ratio: 2.434693e-01	ci left: 7.523634e-03	ci right 9.639855e-03	k: 256	n:30000
KS ci ratio: 4.226176e-02	ci left: 2.181346e-01	ci right 2.275858e-01	k: 6685	n:30000
CYTH3   30000 perm   5 sec   (5760 perm/sec)   p_kst 2.228333e-01   p_cons 8.533333e-03   p_joint 4.000000e-03

Joint ci ratio: 3.227175e-01	ci left: 3.082802e-03	ci right 4.291016e-03	k: 146	n:40000
Cons ci ratio: 2.101310e-01	ci left: 7.718433e-03	ci right 9.553971e-03	k: 344	n:40000
KS ci ratio: 3.665185e-02	ci left: 2.182828e-01	ci right 2.264576e-01	k: 8894	n:40000
CYTH3   40000 perm   7 sec   (5549 perm/sec)   p_kst 2.223500e-01   p_cons 8.600000e-03   p_joint 3.650000e-03

Joint ci ratio: 2.884511e-01	ci left: 3.149686e-03	ci right 4.229200e-03	k: 183	n:50000
Cons ci ratio: 1.862664e-01	ci left: 7.961841e-03	ci right 9.615947e-03	k: 438	n:50000
KS ci ratio: 3.259355e-02	ci left: 2.207096e-01	ci right 2.280424e-01	k: 11218	n:50000
CYTH3   50000 perm   9 sec   (5374 perm/sec)   p_kst 2.243600e-01   p_cons 8.760000e-03   p_joint 3.660000e-03

Joint ci ratio: 2.199340e-01	ci left: 4.687462e-03	ci right 5.861174e-03	k: 315	n:60000
Cons ci ratio: 1.711554e-01	ci left: 7.924551e-03	ci right 9.423555e-03	k: 519	n:60000
KS ci ratio: 2.979482e-02	ci left: 2.205530e-01	ci right 2.272404e-01	k: 13433	n:60000
CYTH3   60000 perm   11 sec   (5237 perm/sec)   p_kst 2.238833e-01   p_cons 8.650000e-03   p_joint 5.250000e-03

Joint ci ratio: 5.963190e-02	ci left: 5.640641e-02	ci right 5.988747e-02	k: 4069	n:70000
Cons ci ratio: 6.601397e-02	ci left: 4.637180e-02	ci right 4.955152e-02	k: 3356	n:70000
KS ci ratio: 2.773863e-02	ci left: 2.188831e-01	ci right 2.250542e-01	k: 15537	n:70000
CYTH3   70000 perm   14 sec   (5110 perm/sec)   p_kst 2.219571e-01   p_cons 4.794286e-02   p_joint 5.812857e-02

Outputting figure to mutsig2_images.part000000000046/CYTH3.2_1252_70000_0.22196_0.047943_0.058129.png
                gene_name: CYTH3
               theta_stop: 0.066 
                    nperm: 70000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.048 
      ci_cons_bounds_left: 0.046 
     ci_cons_bounds_right: 0.050 
                  p_joint: 0.058 
     ci_joint_bounds_left: 0.056 
    ci_joint_bounds_right: 0.060 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000046
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 46 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1429>
Subject: Job 8003999: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1429>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000047> was used as the working directory.
Started at Sun Nov 11 15:05:09 2012
Results reported at Sun Nov 11 15:31:59 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000047.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000047.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 47  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000047.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1882.79 sec.
    Max Memory :      4827 MB
    Max Swap   :      7147 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
47
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 47
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 47: processing genes 4163 - 4252
Calculating significance of each gene.
Using projection method.
4163	CYYR1	1
4164	CYorf15A	1
4165	CYorf15B	1
4166	D2HGDH	8.552206e-01
4167	D4S234E	4.375467e-01
4168	DAAM1	9.753022e-01
4169	DAAM2	6.075679e-02
4170	DAB1	3.681759e-01
4171	DAB2	2.484519e-01
4172	DAB2IP	9.718808e-01
4173	DACH1	5.541956e-02
4174	DACH2	3.216148e-04
4175	DACT1	2.005203e-01
4176	DAD1	1
4177	DAG1	9.276534e-01
4178	DAGLA	9.393619e-01
4179	DAGLB	7.273636e-01
4180	DAK	8.938337e-01
4181	DALRD3	5.926980e-01
4182	DAND5	1.630545e-01
4183	DAO	3.404712e-01
4184	DAOA	2.350711e-01
4185	DAP	1.642301e-01
4186	DAP3	1
4187	DAPK1	1
4188	DAPK2	1
4189	DAPK3	1
4190	DAPL1	1
4191	DAPP1	1
4192	DARC	8.529530e-04
4193	DARS	8.840231e-01
4194	DARS2	1.280092e-01
4195	DAXX	7.004504e-01
4196	DAZAP1	8.523691e-01
4197	DAZAP2	1
4198	DAZL	4.640214e-01
4199	DBC1	4.433043e-01
4200	DBF4	2.596814e-01
4201	DBF4B	2.683618e-01
4202	DBH	8.823650e-01
4203	DBI	8.995408e-02
4204	DBN1	7.308438e-01
4205	DBNDD1	2.375434e-01
4206	DBNDD2	1
4207	DBNL	7.661610e-01
4208	DBP	3.017341e-01
4209	DBR1	1
4210	DBT	7.038430e-01
4211	DBX1	1
4212	DBX2	5.657617e-01
4213	DCAF10	1
4214	DCAF11	1
4215	DCAF12	7.420306e-01
4216	DCAF12L1	1.304005e-02
4217	DCAF12L2	1.056557e-02
4218	DCAF13	1
4219	DCAF15	3.215266e-01
4220	DCAF16	1
4221	DCAF17	4.894357e-01
4222	DCAF4	6.199604e-01
4223	DCAF4L1	4.398272e-01
4224	DCAF4L2	6.404861e-01
4225	DCAF5	9.530987e-02
4226	DCAF6	7.285520e-01
4227	DCAF7	7.215027e-01
4228	DCAF8	3.910054e-01
4229	DCAF8L1	1
4230	DCAF8L2	1
4231	DCAKD	4.049576e-01
4232	DCBLD1	3.449650e-01
4233	DCBLD2	2.481033e-01
4234	DCC	9.771003e-01
4235	DCD	1
4236	DCDC1	3.453720e-01
4237	DCDC2	7.955126e-01
4238	DCDC2B	7.846128e-02
4239	DCHS1	9.987829e-01
4240	DCHS2	9.963633e-01
4241	DCI	5.621438e-01
4242	DCK	5.474368e-01
4243	DCLK1	3.615935e-01
4244	DCLK2	7.377334e-01
4245	DCLK3	3.818533e-01
4246	DCLRE1A	9.676863e-01
4247	DCLRE1B	7.240173e-01
4248	DCLRE1C	5.857707e-01
4249	DCN	1
4250	DCP1A	8.764350e-01
4251	DCP1B	8.097909e-02
4252	DCP2	1
Done

Running MutSig 2:
Scatter job 47: processing genes 4163 - 4252
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
DCHS2
Processing conservation and coverage...
90% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.074454e-02	ci left: 6.094987e-01	ci right 6.286319e-01	k: 6191	n:10000
Cons ci ratio: 4.459463e-02	ci left: 4.260512e-01	ci right 4.455862e-01	k: 4358	n:10000
KS ci ratio: 3.823406e-02	ci left: 5.025508e-01	ci right 5.222420e-01	k: 5124	n:10000
DCHS2   10000 perm   5 sec   (2184 perm/sec)   p_kst 5.124000e-01   p_cons 4.358000e-01   p_joint 6.191000e-01

Outputting figure to mutsig2_images.part000000000047/DCHS2.19_11085_10000_0.5124_0.4358_0.6191.png
                gene_name: DCHS2
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 2 percent done.
DCHS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.361654e-02	ci left: 2.127026e-01	ci right 2.290604e-01	k: 2208	n:10000
Cons ci ratio: 3.369728e-02	ci left: 5.652404e-01	ci right 5.847159e-01	k: 5750	n:10000
KS ci ratio: 1.014049e-01	ci left: 1.233692e-01	ci right 1.366472e-01	k: 1299	n:10000
DCHS1   10000 perm   4 sec   (2431 perm/sec)   p_kst 1.299000e-01   p_cons 5.750000e-01   p_joint 2.208000e-01

Joint ci ratio: 5.117161e-02	ci left: 2.210114e-01	ci right 2.326681e-01	k: 4536	n:20000
Cons ci ratio: 2.368306e-02	ci left: 5.711194e-01	ci right 5.848579e-01	k: 11560	n:20000
KS ci ratio: 6.884178e-02	ci left: 1.346767e-01	ci right 1.443284e-01	k: 2789	n:20000
DCHS1   20000 perm   9 sec   (2293 perm/sec)   p_kst 1.394500e-01   p_cons 5.780000e-01   p_joint 2.268000e-01

Outputting figure to mutsig2_images.part000000000047/DCHS1.16_9977_20000_0.13945_0.578_0.2268.png
                gene_name: DCHS1
               theta_stop: 0.069 
                    nperm: 20000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 4 percent done.
DCC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.426541e-02	ci left: 8.766408e-01	ci right 8.893352e-01	k: 8831	n:10000
Cons ci ratio: 2.341629e-02	ci left: 7.282528e-01	ci right 7.456090e-01	k: 7370	n:10000
KS ci ratio: 3.370417e-02	ci left: 5.651401e-01	ci right 5.846162e-01	k: 5749	n:10000
DCC   10000 perm   3 sec   (3644 perm/sec)   p_kst 5.749000e-01   p_cons 7.370000e-01   p_joint 8.831000e-01

Outputting figure to mutsig2_images.part000000000047/DCC.14_4460_10000_0.5749_0.737_0.8831.png
                gene_name: DCC
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 6 percent done.
DACH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.041386e-01	ci left: 1.176005e-01	ci right 1.306194e-01	k: 1240	n:10000
Cons ci ratio: 7.776672e-02	ci left: 1.946611e-01	ci right 2.105125e-01	k: 2025	n:10000
KS ci ratio: 9.114155e-02	ci left: 1.489391e-01	ci right 1.632618e-01	k: 1560	n:10000
DACH2   10000 perm   2 sec   (5049 perm/sec)   p_kst 1.560000e-01   p_cons 2.025000e-01   p_joint 1.240000e-01

Joint ci ratio: 6.558420e-02	ci left: 1.465570e-01	ci right 1.565446e-01	k: 3030	n:20000
Cons ci ratio: 5.465196e-02	ci left: 1.989779e-01	ci right 2.102081e-01	k: 4091	n:20000
KS ci ratio: 6.629463e-02	ci left: 1.438447e-01	ci right 1.537576e-01	k: 2975	n:20000
DACH2   20000 perm   4 sec   (4543 perm/sec)   p_kst 1.487500e-01   p_cons 2.045500e-01   p_joint 1.515000e-01

Outputting figure to mutsig2_images.part000000000047/DACH2.11_1857_20000_0.14875_0.20455_0.1515.png
                gene_name: DACH2
               theta_stop: 0.066 
                    nperm: 20000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 8 percent done.
DCAF12L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.516963e-03	ci left: 9.507523e-01	ci right 9.589800e-01	k: 9550	n:10000
Cons ci ratio: 1.904187e-02	ci left: 8.012576e-01	ci right 8.167620e-01	k: 8091	n:10000
KS ci ratio: 1.347312e-02	ci left: 8.882113e-01	ci right 9.003580e-01	k: 8944	n:10000
DCAF12L1   10000 perm   2 sec   (4974 perm/sec)   p_kst 8.944000e-01   p_cons 8.091000e-01   p_joint 9.550000e-01

Outputting figure to mutsig2_images.part000000000047/DCAF12L1.11_1396_10000_0.8944_0.8091_0.955.png
                gene_name: DCAF12L1
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 10 percent done.
DCAF4L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.751375e-02	ci left: 5.120544e-01	ci right 5.317328e-01	k: 5219	n:10000
Cons ci ratio: 2.322591e-03	ci left: 9.952521e-01	ci right 9.976443e-01	k: 9966	n:10000
KS ci ratio: 5.934121e-02	ci left: 2.946952e-01	ci right 3.128192e-01	k: 3037	n:10000
DCAF4L2   10000 perm   2 sec   (5285 perm/sec)   p_kst 3.037000e-01   p_cons 9.966000e-01   p_joint 5.219000e-01

Outputting figure to mutsig2_images.part000000000047/DCAF4L2.11_1192_10000_0.3037_0.9966_0.5219.png
                gene_name: DCAF4L2
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 12 percent done.
DBC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.207657e-02	ci left: 5.892161e-01	ci right 6.085262e-01	k: 5989	n:10000
Cons ci ratio: 1.054391e-02	ci left: 9.275089e-01	ci right 9.374374e-01	k: 9326	n:10000
KS ci ratio: 4.102367e-02	ci left: 4.673682e-01	ci right 4.870451e-01	k: 4772	n:10000
DBC1   10000 perm   2 sec   (4963 perm/sec)   p_kst 4.772000e-01   p_cons 9.326000e-01   p_joint 5.989000e-01

Outputting figure to mutsig2_images.part000000000047/DBC1.9_2314_10000_0.4772_0.9326_0.5989.png
                gene_name: DBC1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 14 percent done.
DAAM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.122464e-02	ci left: 7.649647e-01	ci right 7.814758e-01	k: 7733	n:10000
Cons ci ratio: 1.377056e-02	ci left: 8.839084e-01	ci right 8.962634e-01	k: 8902	n:10000
KS ci ratio: 3.632827e-02	ci left: 5.280685e-01	ci right 5.477094e-01	k: 5379	n:10000
DAAM2   10000 perm   2 sec   (4362 perm/sec)   p_kst 5.379000e-01   p_cons 8.902000e-01   p_joint 7.733000e-01

Outputting figure to mutsig2_images.part000000000047/DAAM2.7_3300_10000_0.5379_0.8902_0.7733.png
                gene_name: DAAM2
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 16 percent done.
DARC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.802429e-02	ci left: 8.179167e-01	ci right 8.328932e-01	k: 8255	n:10000
Cons ci ratio: 2.661160e-02	ci left: 6.752890e-01	ci right 6.936034e-01	k: 6845	n:10000
KS ci ratio: 2.891436e-02	ci left: 6.381450e-01	ci right 6.569690e-01	k: 6476	n:10000
DARC   10000 perm   2 sec   (5964 perm/sec)   p_kst 6.476000e-01   p_cons 6.845000e-01   p_joint 8.255000e-01

Outputting figure to mutsig2_images.part000000000047/DARC.7_1046_10000_0.6476_0.6845_0.8255.png
                gene_name: DARC
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 18 percent done.
DCAF5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.897433e-02	ci left: 3.808216e-01	ci right 4.000423e-01	k: 3904	n:10000
Cons ci ratio: 7.507969e-02	ci left: 2.060944e-01	ci right 2.222724e-01	k: 2141	n:10000
KS ci ratio: 7.740754e-02	ci left: 1.961390e-01	ci right 2.120337e-01	k: 2040	n:10000
DCAF5   10000 perm   2 sec   (4739 perm/sec)   p_kst 2.040000e-01   p_cons 2.141000e-01   p_joint 3.904000e-01

Outputting figure to mutsig2_images.part000000000047/DCAF5.7_2865_10000_0.204_0.2141_0.3904.png
                gene_name: DCAF5
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 20 percent done.
DAB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.025127e-02	ci left: 6.171342e-01	ci right 6.361919e-01	k: 6267	n:10000
Cons ci ratio: 7.503512e-02	ci left: 2.062917e-01	ci right 2.224751e-01	k: 2143	n:10000
KS ci ratio: 1.796173e-02	ci left: 8.189333e-01	ci right 8.338761e-01	k: 8265	n:10000
DAB1   10000 perm   2 sec   (5650 perm/sec)   p_kst 8.265000e-01   p_cons 2.143000e-01   p_joint 6.267000e-01

Outputting figure to mutsig2_images.part000000000047/DAB1.6_1720_10000_0.8265_0.2143_0.6267.png
                gene_name: DAB1
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 22 percent done.
DACH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.693146e-02	ci left: 2.467762e-01	ci right 2.639665e-01	k: 2553	n:10000
Cons ci ratio: 4.826174e-02	ci left: 3.877898e-01	ci right 4.070700e-01	k: 3974	n:10000
KS ci ratio: 7.949257e-02	ci left: 1.877666e-01	ci right 2.034111e-01	k: 1955	n:10000
DACH1   10000 perm   2 sec   (5406 perm/sec)   p_kst 1.955000e-01   p_cons 3.974000e-01   p_joint 2.553000e-01

Outputting figure to mutsig2_images.part000000000047/DACH1.6_2171_10000_0.1955_0.3974_0.2553.png
                gene_name: DACH1
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 24 percent done.
DCAF12L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.575560e-02	ci left: 2.535008e-01	ci right 2.708379e-01	k: 2621	n:10000
Cons ci ratio: 1.087943e-01	ci left: 1.086148e-01	ci right 1.212105e-01	k: 1148	n:10000
KS ci ratio: 3.914713e-02	ci left: 4.907512e-01	ci right 5.104484e-01	k: 5006	n:10000
DCAF12L2   10000 perm   2 sec   (5771 perm/sec)   p_kst 5.006000e-01   p_cons 1.148000e-01   p_joint 2.621000e-01

Joint ci ratio: 3.528614e-02	ci left: 3.748104e-01	ci right 3.883241e-01	k: 7631	n:20000
Cons ci ratio: 7.858209e-02	ci left: 1.062851e-01	ci right 1.150284e-01	k: 2212	n:20000
KS ci ratio: 2.781646e-02	ci left: 4.912462e-01	ci right 5.051543e-01	k: 9964	n:20000
DCAF12L2   20000 perm   4 sec   (5077 perm/sec)   p_kst 4.982000e-01   p_cons 1.106000e-01   p_joint 3.815500e-01

Outputting figure to mutsig2_images.part000000000047/DCAF12L2.6_1396_20000_0.4982_0.1106_0.38155.png
                gene_name: DCAF12L2
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 27 percent done.
DCAF8L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.701279e-02	ci left: 6.687414e-01	ci right 6.871549e-01	k: 6780	n:10000
Cons ci ratio: 4.671537e-02	ci left: 4.034258e-01	ci right 4.228248e-01	k: 4131	n:10000
KS ci ratio: 3.468637e-02	ci left: 5.510064e-01	ci right 5.705582e-01	k: 5608	n:10000
DCAF8L1   10000 perm   2 sec   (5941 perm/sec)   p_kst 5.608000e-01   p_cons 4.131000e-01   p_joint 6.780000e-01

Outputting figure to mutsig2_images.part000000000047/DCAF8L1.6_1807_10000_0.5608_0.4131_0.678.png
                gene_name: DCAF8L1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 29 percent done.
DCP1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.665108e-02	ci left: 2.483582e-01	ci right 2.655836e-01	k: 2569	n:10000
Cons ci ratio: 8.452535e-02	ci left: 1.694660e-01	ci right 1.845227e-01	k: 1769	n:10000
KS ci ratio: 4.820135e-02	ci left: 3.883871e-01	ci right 4.076723e-01	k: 3980	n:10000
DCP1B   10000 perm   2 sec   (5549 perm/sec)   p_kst 3.980000e-01   p_cons 1.769000e-01   p_joint 2.569000e-01

Outputting figure to mutsig2_images.part000000000047/DCP1B.6_1890_10000_0.398_0.1769_0.2569.png
                gene_name: DCP1B
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 31 percent done.
DAB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.736201e-01	ci left: 4.427577e-02	ci right 5.278970e-02	k: 484	n:10000
Cons ci ratio: 2.468251e-01	ci left: 2.155910e-02	ci right 2.772208e-02	k: 245	n:10000
KS ci ratio: 5.881241e-02	ci left: 2.984627e-01	ci right 3.166495e-01	k: 3075	n:10000
DAB2   10000 perm   2 sec   (4817 perm/sec)   p_kst 3.075000e-01   p_cons 2.450000e-02   p_joint 4.840000e-02

Joint ci ratio: 1.235085e-01	ci left: 4.498124e-02	ci right 5.095106e-02	k: 958	n:20000
Cons ci ratio: 1.750839e-01	ci left: 2.230608e-02	ci right 2.663369e-02	k: 488	n:20000
KS ci ratio: 4.172385e-02	ci left: 2.997660e-01	ci right 3.125904e-01	k: 6123	n:20000
DAB2   20000 perm   5 sec   (4416 perm/sec)   p_kst 3.061500e-01   p_cons 2.440000e-02   p_joint 4.790000e-02

Joint ci ratio: 8.354483e-02	ci left: 6.550338e-02	ci right 7.124721e-02	k: 2050	n:30000
Cons ci ratio: 1.432069e-01	ci left: 2.261928e-02	ci right 2.614032e-02	k: 730	n:30000
KS ci ratio: 3.410219e-02	ci left: 3.005223e-01	ci right 3.109820e-01	k: 9172	n:30000
DAB2   30000 perm   7 sec   (4269 perm/sec)   p_kst 3.057333e-01   p_cons 2.433333e-02   p_joint 6.833333e-02

Joint ci ratio: 8.752659e-02	ci left: 4.565623e-02	ci right 4.985973e-02	k: 1909	n:40000
Cons ci ratio: 1.331772e-01	ci left: 1.978649e-02	ci right 2.263362e-02	k: 847	n:40000
KS ci ratio: 2.957982e-02	ci left: 3.005646e-01	ci right 3.096138e-01	k: 12203	n:40000
DAB2   40000 perm   10 sec   (4129 perm/sec)   p_kst 3.050750e-01   p_cons 2.117500e-02   p_joint 4.772500e-02

Joint ci ratio: 8.027484e-02	ci left: 4.368978e-02	ci right 4.736322e-02	k: 2275	n:50000
Cons ci ratio: 1.178739e-01	ci left: 2.036302e-02	ci right 2.293293e-02	k: 1081	n:50000
KS ci ratio: 2.582905e-02	ci left: 3.112880e-01	ci right 3.194535e-01	k: 15768	n:50000
DAB2   50000 perm   12 sec   (4045 perm/sec)   p_kst 3.153600e-01   p_cons 2.162000e-02   p_joint 4.550000e-02

Joint ci ratio: 8.017321e-02	ci left: 3.677839e-02	ci right 3.986648e-02	k: 2298	n:60000
Cons ci ratio: 1.071576e-01	ci left: 2.064638e-02	ci right 2.300019e-02	k: 1308	n:60000
KS ci ratio: 2.359025e-02	ci left: 3.114334e-01	ci right 3.188845e-01	k: 18909	n:60000
DAB2   60000 perm   15 sec   (3969 perm/sec)   p_kst 3.151500e-01   p_cons 2.180000e-02   p_joint 3.830000e-02

Joint ci ratio: 7.318488e-02	ci left: 3.792869e-02	ci right 4.082394e-02	k: 2755	n:70000
Cons ci ratio: 9.971613e-02	ci left: 2.052186e-02	ci right 2.268947e-02	k: 1511	n:70000
KS ci ratio: 2.184008e-02	ci left: 3.117161e-01	ci right 3.186135e-01	k: 22061	n:70000
DAB2   70000 perm   18 sec   (3889 perm/sec)   p_kst 3.151571e-01   p_cons 2.158571e-02   p_joint 3.935714e-02

Outputting figure to mutsig2_images.part000000000047/DAB2.5_2365_70000_0.31516_0.021586_0.039357.png
                gene_name: DAB2
               theta_stop: 0.100 
                    nperm: 70000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.022 
      ci_cons_bounds_left: 0.021 
     ci_cons_bounds_right: 0.023 
                  p_joint: 0.039 
     ci_joint_bounds_left: 0.038 
    ci_joint_bounds_right: 0.041 

Current progress: 33 percent done.
DARS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.880038e-02	ci left: 1.292403e-01	ci right 1.427725e-01	k: 1359	n:10000
Cons ci ratio: 7.002437e-02	ci left: 2.301744e-01	ci right 2.469782e-01	k: 2385	n:10000
KS ci ratio: 1.122450e-01	ci left: 1.025665e-01	ci right 1.148625e-01	k: 1086	n:10000
DARS2   10000 perm   2 sec   (5148 perm/sec)   p_kst 1.086000e-01   p_cons 2.385000e-01   p_joint 1.359000e-01

Joint ci ratio: 7.945270e-02	ci left: 1.041727e-01	ci right 1.128415e-01	k: 2169	n:20000
Cons ci ratio: 4.961759e-02	ci left: 2.319132e-01	ci right 2.437632e-01	k: 4756	n:20000
KS ci ratio: 8.269549e-02	ci left: 9.680801e-02	ci right 1.052084e-01	k: 2019	n:20000
DARS2   20000 perm   4 sec   (4502 perm/sec)   p_kst 1.009500e-01   p_cons 2.378000e-01   p_joint 1.084500e-01

Outputting figure to mutsig2_images.part000000000047/DARS2.5_2006_20000_0.10095_0.2378_0.10845.png
                gene_name: DARS2
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.097 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 35 percent done.
DCBLD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.453391e-03	ci left: 9.703722e-01	ci right 9.767479e-01	k: 9737	n:10000
Cons ci ratio: 2.302997e-02	ci left: 7.347196e-01	ci right 7.519384e-01	k: 7434	n:10000
KS ci ratio: 2.225767e-02	ci left: 7.476605e-01	ci right 7.645900e-01	k: 7562	n:10000
DCBLD2   10000 perm   2 sec   (5736 perm/sec)   p_kst 7.562000e-01   p_cons 7.434000e-01   p_joint 9.737000e-01

Outputting figure to mutsig2_images.part000000000047/DCBLD2.5_2392_10000_0.7562_0.7434_0.9737.png
                gene_name: DCBLD2
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 37 percent done.
DACT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.097438e-02	ci left: 4.679675e-01	ci right 4.876454e-01	k: 4778	n:10000
Cons ci ratio: 3.436366e-02	ci left: 5.556165e-01	ci right 5.751454e-01	k: 5654	n:10000
KS ci ratio: 5.588080e-02	ci left: 3.204868e-01	ci right 3.390125e-01	k: 3297	n:10000
DACT1   10000 perm   2 sec   (5210 perm/sec)   p_kst 3.297000e-01   p_cons 5.654000e-01   p_joint 4.778000e-01

Outputting figure to mutsig2_images.part000000000047/DACT1.4_2527_10000_0.3297_0.5654_0.4778.png
                gene_name: DACT1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 39 percent done.
DAGLA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.955063e-02	ci left: 6.280896e-01	ci right 6.470302e-01	k: 6376	n:10000
Cons ci ratio: 1.029581e-01	ci left: 1.200443e-01	ci right 1.331741e-01	k: 1265	n:10000
KS ci ratio: 1.208232e-02	ci left: 9.076136e-01	ci right 9.187443e-01	k: 9133	n:10000
DAGLA   10000 perm   2 sec   (4928 perm/sec)   p_kst 9.133000e-01   p_cons 1.265000e-01   p_joint 6.376000e-01

Joint ci ratio: 3.158408e-02	ci left: 4.281641e-01	ci right 4.419548e-01	k: 8701	n:20000
Cons ci ratio: 7.404775e-02	ci left: 1.183306e-01	ci right 1.274793e-01	k: 2457	n:20000
KS ci ratio: 8.525720e-03	ci left: 9.096209e-01	ci right 9.174584e-01	k: 18272	n:20000
DAGLA   20000 perm   4 sec   (4473 perm/sec)   p_kst 9.136000e-01   p_cons 1.228500e-01   p_joint 4.350500e-01

Outputting figure to mutsig2_images.part000000000047/DAGLA.4_3205_20000_0.9136_0.12285_0.43505.png
                gene_name: DAGLA
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.44 

Current progress: 41 percent done.
DBF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.435966e-02	ci left: 7.124997e-01	ci right 7.301712e-01	k: 7214	n:10000
KS ci ratio: 2.791418e-02	ci left: 6.541423e-01	ci right 6.727624e-01	k: 6635	n:10000
DBF4   10000 perm   2 sec   (5922 perm/sec)   p_kst 6.635000e-01   p_cons 7.214000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000047/DBF4.4_2073_10000_0.6635_0.7214_1.png
                gene_name: DBF4
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 43 percent done.
DBF4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.064764e-02	ci left: 1.833364e-01	ci right 1.988440e-01	k: 1910	n:10000
Cons ci ratio: 6.724503e-03	ci left: 9.680482e-01	ci right 9.746734e-01	k: 9715	n:10000
KS ci ratio: 1.073223e-01	ci left: 1.113483e-01	ci right 1.240753e-01	k: 1176	n:10000
DBF4B   10000 perm   2 sec   (6021 perm/sec)   p_kst 1.176000e-01   p_cons 9.715000e-01   p_joint 1.910000e-01

Joint ci ratio: 6.011001e-02	ci left: 1.700529e-01	ci right 1.806416e-01	k: 3506	n:20000
Cons ci ratio: 4.712578e-03	ci left: 9.695669e-01	ci right 9.741945e-01	k: 19439	n:20000
KS ci ratio: 7.685506e-02	ci left: 1.106590e-01	ci right 1.195532e-01	k: 2301	n:20000
DBF4B   20000 perm   4 sec   (5269 perm/sec)   p_kst 1.150500e-01   p_cons 9.719500e-01   p_joint 1.753000e-01

Outputting figure to mutsig2_images.part000000000047/DBF4B.4_1949_20000_0.11505_0.97195_0.1753.png
                gene_name: DBF4B
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 45 percent done.
DCDC2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.904187e-02	ci left: 8.012576e-01	ci right 8.167620e-01	k: 8091	n:10000
KS ci ratio: 2.118833e-02	ci left: 7.655723e-01	ci right 7.820679e-01	k: 7739	n:10000
DCDC2B   10000 perm   2 sec   (6144 perm/sec)   p_kst 7.739000e-01   p_cons 8.091000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000047/DCDC2B.4_1086_10000_0.7739_0.8091_1.png
                gene_name: DCDC2B
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 47 percent done.
DCLK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.516850e-01	ci left: 5.783363e-02	ci right 6.742310e-02	k: 625	n:10000
Cons ci ratio: 1.922036e-02	ci left: 7.983141e-01	ci right 8.139072e-01	k: 8062	n:10000
KS ci ratio: 2.631913e-01	ci left: 1.884073e-02	ci right 2.464254e-02	k: 216	n:10000
DCLK1   10000 perm   2 sec   (5706 perm/sec)   p_kst 2.160000e-02   p_cons 8.062000e-01   p_joint 6.250000e-02

Joint ci ratio: 1.408160e-01	ci left: 3.466792e-02	ci right 3.996769e-02	k: 745	n:20000
Cons ci ratio: 1.382490e-02	ci left: 7.951962e-01	ci right 8.063163e-01	k: 16016	n:20000
KS ci ratio: 1.833216e-01	ci left: 2.029828e-02	ci right 2.444220e-02	k: 446	n:20000
DCLK1   20000 perm   4 sec   (5102 perm/sec)   p_kst 2.230000e-02   p_cons 8.008000e-01   p_joint 3.725000e-02

Joint ci ratio: 1.221922e-01	ci left: 3.113662e-02	ci right 3.522111e-02	k: 994	n:30000
Cons ci ratio: 1.124427e-02	ci left: 7.974785e-01	ci right 8.065296e-01	k: 24061	n:30000
KS ci ratio: 1.546509e-01	ci left: 1.934319e-02	ci right 2.261716e-02	k: 628	n:30000
DCLK1   30000 perm   6 sec   (4858 perm/sec)   p_kst 2.093333e-02   p_cons 8.020333e-01   p_joint 3.313333e-02

Joint ci ratio: 1.134127e-01	ci left: 2.735298e-02	ci right 3.066587e-02	k: 1159	n:40000
Cons ci ratio: 9.734976e-03	ci left: 7.981864e-01	ci right 8.060197e-01	k: 32085	n:40000
KS ci ratio: 1.356493e-01	ci left: 1.906122e-02	ci right 2.185900e-02	k: 817	n:40000
DCLK1   40000 perm   9 sec   (4697 perm/sec)   p_kst 2.042500e-02   p_cons 8.021250e-01   p_joint 2.897500e-02

Joint ci ratio: 9.978618e-02	ci left: 2.844404e-02	ci right 3.145086e-02	k: 1496	n:50000
Cons ci ratio: 8.647513e-03	ci left: 8.007949e-01	ci right 8.077698e-01	k: 40215	n:50000
KS ci ratio: 1.221545e-01	ci left: 1.894599e-02	ci right 2.143016e-02	k: 1008	n:50000
DCLK1   50000 perm   11 sec   (4568 perm/sec)   p_kst 2.016000e-02   p_cons 8.043000e-01   p_joint 2.992000e-02

Joint ci ratio: 8.325301e-02	ci left: 3.414789e-02	ci right 3.713058e-02	k: 2137	n:60000
Cons ci ratio: 7.888618e-03	ci left: 8.013205e-01	ci right 8.076834e-01	k: 48271	n:60000
KS ci ratio: 1.117850e-01	ci left: 1.895955e-02	ci right 2.122054e-02	k: 1204	n:60000
DCLK1   60000 perm   13 sec   (4452 perm/sec)   p_kst 2.006667e-02   p_cons 8.045167e-01   p_joint 3.561667e-02

Joint ci ratio: 7.863247e-02	ci left: 3.293592e-02	ci right 3.564572e-02	k: 2399	n:70000
Cons ci ratio: 7.295528e-03	ci left: 8.019015e-01	ci right 8.077875e-01	k: 56340	n:70000
KS ci ratio: 1.031503e-01	ci left: 1.917060e-02	ci right 2.126944e-02	k: 1414	n:70000
DCLK1   70000 perm   16 sec   (4348 perm/sec)   p_kst 2.020000e-02   p_cons 8.048571e-01   p_joint 3.427143e-02

Joint ci ratio: 7.380313e-02	ci left: 3.280395e-02	ci right 3.532999e-02	k: 2724	n:80000
Cons ci ratio: 6.830465e-03	ci left: 8.018100e-01	ci right 8.073179e-01	k: 64366	n:80000
KS ci ratio: 9.600901e-02	ci left: 1.943159e-02	ci right 2.140341e-02	k: 1632	n:80000
DCLK1   80000 perm   19 sec   (4251 perm/sec)   p_kst 2.040000e-02   p_cons 8.045750e-01   p_joint 3.405000e-02

Outputting figure to mutsig2_images.part000000000047/DCLK1.4_2258_80000_0.0204_0.80458_0.03405.png
                gene_name: DCLK1
               theta_stop: 0.096 
                    nperm: 80000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.021 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.034 
     ci_joint_bounds_left: 0.033 
    ci_joint_bounds_right: 0.035 

Current progress: 49 percent done.
DAXX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.132010e-01	ci left: 4.319899e-03	ci right 7.378784e-03	k: 57	n:10000
Cons ci ratio: 1.046878e+00	ci left: 6.923711e-04	ci right 2.222014e-03	k: 13	n:10000
KS ci ratio: 5.760589e-02	ci left: 3.072893e-01	ci right 3.256177e-01	k: 3164	n:10000
DAXX   10000 perm   2 sec   (5469 perm/sec)   p_kst 3.164000e-01   p_cons 1.300000e-03   p_joint 5.700000e-03

Joint ci ratio: 3.910091e-01	ci left: 4.024882e-03	ci right 6.023201e-03	k: 99	n:20000
Cons ci ratio: 8.352662e-01	ci left: 6.500803e-04	ci right 1.604591e-03	k: 21	n:20000
KS ci ratio: 4.046215e-02	ci left: 3.128902e-01	ci right 3.258623e-01	k: 6387	n:20000
DAXX   20000 perm   4 sec   (4957 perm/sec)   p_kst 3.193500e-01   p_cons 1.050000e-03   p_joint 4.950000e-03

Joint ci ratio: 2.222095e-01	ci left: 9.125451e-03	ci right 1.143753e-02	k: 307	n:30000
Cons ci ratio: 6.529304e-01	ci left: 8.127564e-04	ci right 1.622181e-03	k: 35	n:30000
KS ci ratio: 3.290093e-02	ci left: 3.158839e-01	ci right 3.264841e-01	k: 9635	n:30000
DAXX   30000 perm   6 sec   (4695 perm/sec)   p_kst 3.211667e-01   p_cons 1.166667e-03   p_joint 1.023333e-02

Joint ci ratio: 2.074191e-01	ci left: 7.931758e-03	ci right 9.790597e-03	k: 353	n:40000
Cons ci ratio: 5.974655e-01	ci left: 7.568492e-04	ci right 1.419033e-03	k: 42	n:40000
KS ci ratio: 2.844737e-02	ci left: 3.172971e-01	ci right 3.264787e-01	k: 12875	n:40000
DAXX   40000 perm   9 sec   (4506 perm/sec)   p_kst 3.218750e-01   p_cons 1.050000e-03   p_joint 8.825000e-03

Joint ci ratio: 2.267827e-01	ci left: 5.266403e-03	ci right 6.631915e-03	k: 296	n:50000
Cons ci ratio: 5.381626e-01	ci left: 7.768163e-04	ci right 1.363601e-03	k: 52	n:50000
KS ci ratio: 2.535926e-02	ci left: 3.192404e-01	ci right 3.274601e-01	k: 16167	n:50000
DAXX   50000 perm   11 sec   (4395 perm/sec)   p_kst 3.233400e-01   p_cons 1.040000e-03   p_joint 5.920000e-03

Joint ci ratio: 1.625461e-01	ci left: 8.819250e-03	ci right 1.039540e-02	k: 575	n:60000
Cons ci ratio: 4.936101e-01	ci left: 7.923397e-04	ci right 1.324494e-03	k: 62	n:60000
KS ci ratio: 2.312296e-02	ci left: 3.201060e-01	ci right 3.276110e-01	k: 19431	n:60000
DAXX   60000 perm   14 sec   (4316 perm/sec)   p_kst 3.238500e-01   p_cons 1.033333e-03   p_joint 9.583333e-03

Joint ci ratio: 1.539979e-01	ci left: 8.464767e-03	ci right 9.890650e-03	k: 641	n:70000
Cons ci ratio: 4.380157e-01	ci left: 8.935993e-04	ci right 1.406341e-03	k: 79	n:70000
KS ci ratio: 2.137121e-02	ci left: 3.211316e-01	ci right 3.280830e-01	k: 22722	n:70000
DAXX   70000 perm   17 sec   (4238 perm/sec)   p_kst 3.246000e-01   p_cons 1.128571e-03   p_joint 9.157143e-03

Joint ci ratio: 1.612000e-01	ci left: 6.745777e-03	ci right 7.940369e-03	k: 586	n:80000
Cons ci ratio: 3.998407e-01	ci left: 9.608614e-04	ci right 1.451465e-03	k: 95	n:80000
KS ci ratio: 1.996142e-02	ci left: 3.220039e-01	ci right 3.285088e-01	k: 26020	n:80000
DAXX   80000 perm   19 sec   (4159 perm/sec)   p_kst 3.252500e-01   p_cons 1.187500e-03   p_joint 7.325000e-03

Joint ci ratio: 1.301571e-01	ci left: 9.327970e-03	ci right 1.063724e-02	k: 897	n:90000
Cons ci ratio: 3.653062e-01	ci left: 1.044954e-03	ci right 1.521460e-03	k: 114	n:90000
KS ci ratio: 1.879869e-02	ci left: 3.226827e-01	ci right 3.288174e-01	k: 29317	n:90000
DAXX   90000 perm   22 sec   (4080 perm/sec)   p_kst 3.257444e-01   p_cons 1.266667e-03   p_joint 9.966667e-03

Joint ci ratio: 1.290675e-01	ci left: 8.549761e-03	ci right 9.738972e-03	k: 913	n:100000
Cons ci ratio: 3.561462e-01	ci left: 9.950163e-04	ci right 1.434737e-03	k: 120	n:100000
KS ci ratio: 1.784316e-02	ci left: 3.226159e-01	ci right 3.284342e-01	k: 32552	n:100000
DAXX   100000 perm   25 sec   (4006 perm/sec)   p_kst 3.255200e-01   p_cons 1.200000e-03   p_joint 9.130000e-03

Joint ci ratio: 1.238341e-01	ci left: 8.467956e-03	ci right 9.594523e-03	k: 992	n:110000
Cons ci ratio: 3.409859e-01	ci left: 9.958092e-04	ci right 1.413024e-03	k: 131	n:110000
KS ci ratio: 1.700832e-02	ci left: 3.228672e-01	ci right 3.284147e-01	k: 35820	n:110000
DAXX   110000 perm   28 sec   (3939 perm/sec)   p_kst 3.256364e-01   p_cons 1.190909e-03   p_joint 9.018182e-03

Joint ci ratio: 1.238812e-01	ci left: 7.762116e-03	ci right 8.795192e-03	k: 992	n:120000
Cons ci ratio: 3.220219e-01	ci left: 1.035074e-03	ci right 1.439650e-03	k: 147	n:120000
KS ci ratio: 1.629085e-02	ci left: 3.228074e-01	ci right 3.281177e-01	k: 39055	n:120000
DAXX   120000 perm   31 sec   (3873 perm/sec)   p_kst 3.254583e-01   p_cons 1.225000e-03   p_joint 8.266667e-03

Joint ci ratio: 1.213608e-01	ci left: 7.478130e-03	ci right 8.451703e-03	k: 1034	n:130000
Cons ci ratio: 3.077911e-01	ci left: 1.054640e-03	ci right 1.445078e-03	k: 161	n:130000
KS ci ratio: 1.564069e-02	ci left: 3.232217e-01	ci right 3.283246e-01	k: 42350	n:130000
DAXX   130000 perm   34 sec   (3810 perm/sec)   p_kst 3.257692e-01   p_cons 1.238462e-03   p_joint 7.953846e-03

Joint ci ratio: 1.238922e-01	ci left: 6.659928e-03	ci right 7.546386e-03	k: 993	n:140000
Cons ci ratio: 3.004666e-01	ci left: 1.032090e-03	ci right 1.403351e-03	k: 169	n:140000
KS ci ratio: 1.506777e-02	ci left: 3.234306e-01	ci right 3.283481e-01	k: 45624	n:140000
DAXX   140000 perm   37 sec   (3747 perm/sec)   p_kst 3.258857e-01   p_cons 1.207143e-03   p_joint 7.092857e-03

Joint ci ratio: 1.028037e-01	ci left: 9.106216e-03	ci right 1.009954e-02	k: 1439	n:150000
Cons ci ratio: 2.895970e-01	ci left: 1.043540e-03	ci right 1.402853e-03	k: 182	n:150000
KS ci ratio: 1.453323e-02	ci left: 3.242268e-01	ci right 3.289799e-01	k: 48990	n:150000
DAXX   150000 perm   41 sec   (3688 perm/sec)   p_kst 3.266000e-01   p_cons 1.213333e-03   p_joint 9.593333e-03

Joint ci ratio: 1.089564e-01	ci left: 7.587546e-03	ci right 8.467921e-03	k: 1283	n:160000
Cons ci ratio: 2.763209e-01	ci left: 1.082843e-03	ci right 1.435629e-03	k: 200	n:160000
KS ci ratio: 1.406336e-02	ci left: 3.245641e-01	ci right 3.291671e-01	k: 52298	n:160000
DAXX   160000 perm   44 sec   (3631 perm/sec)   p_kst 3.268625e-01   p_cons 1.250000e-03   p_joint 8.018750e-03

Joint ci ratio: 1.093692e-01	ci left: 7.089624e-03	ci right 7.915540e-03	k: 1274	n:170000
Cons ci ratio: 2.703378e-01	ci left: 1.068458e-03	ci right 1.407742e-03	k: 209	n:170000
KS ci ratio: 1.363503e-02	ci left: 3.249051e-01	ci right 3.293714e-01	k: 55613	n:170000
DAXX   170000 perm   48 sec   (3577 perm/sec)   p_kst 3.271353e-01   p_cons 1.229412e-03   p_joint 7.494118e-03

Joint ci ratio: 7.975108e-02	ci left: 1.271595e-02	ci right 1.377759e-02	k: 2383	n:180000
Cons ci ratio: 2.560911e-01	ci left: 1.133647e-03	ci right 1.471632e-03	k: 233	n:180000
KS ci ratio: 1.326650e-02	ci left: 3.244502e-01	ci right 3.287887e-01	k: 58791	n:180000
DAXX   180000 perm   51 sec   (3524 perm/sec)   p_kst 3.266167e-01   p_cons 1.294444e-03   p_joint 1.323889e-02

Joint ci ratio: 8.099205e-02	ci left: 1.168542e-02	ci right 1.267692e-02	k: 2313	n:190000
Cons ci ratio: 2.487571e-01	ci left: 1.143006e-03	ci right 1.472512e-03	k: 247	n:190000
KS ci ratio: 1.291362e-02	ci left: 3.244756e-01	ci right 3.286982e-01	k: 62051	n:190000
DAXX   190000 perm   55 sec   (3471 perm/sec)   p_kst 3.265842e-01   p_cons 1.300000e-03   p_joint 1.217368e-02

Joint ci ratio: 8.390770e-02	ci left: 1.034182e-02	ci right 1.125244e-02	k: 2158	n:200000
Cons ci ratio: 2.406435e-01	ci left: 1.165646e-03	ci right 1.489085e-03	k: 264	n:200000
KS ci ratio: 1.258706e-02	ci left: 3.245148e-01	ci right 3.286303e-01	k: 65314	n:200000
DAXX   200000 perm   58 sec   (3420 perm/sec)   p_kst 3.265700e-01   p_cons 1.320000e-03   p_joint 1.079000e-02

Joint ci ratio: 8.745627e-02	ci left: 9.061563e-03	ci right 9.894918e-03	k: 1989	n:210000
Cons ci ratio: 2.341080e-01	ci left: 1.177321e-03	ci right 1.493844e-03	k: 279	n:210000
KS ci ratio: 1.228820e-02	ci left: 3.244041e-01	ci right 3.284198e-01	k: 68546	n:210000
DAXX   210000 perm   62 sec   (3369 perm/sec)   p_kst 3.264095e-01   p_cons 1.328571e-03   p_joint 9.471429e-03

Joint ci ratio: 7.934519e-02	ci left: 1.053714e-02	ci right 1.141218e-02	k: 2413	n:220000
Cons ci ratio: 2.280776e-01	ci left: 1.188043e-03	ci right 1.498062e-03	k: 294	n:220000
KS ci ratio: 1.200569e-02	ci left: 3.244497e-01	ci right 3.283730e-01	k: 71810	n:220000
DAXX   220000 perm   66 sec   (3321 perm/sec)   p_kst 3.264091e-01   p_cons 1.336364e-03   p_joint 1.096818e-02

Joint ci ratio: 7.936433e-02	ci left: 1.007891e-02	ci right 1.091610e-02	k: 2413	n:230000
Cons ci ratio: 2.250492e-01	ci left: 1.169196e-03	ci right 1.469685e-03	k: 302	n:230000
KS ci ratio: 1.174704e-02	ci left: 3.242971e-01	ci right 3.281334e-01	k: 75029	n:230000
DAXX   230000 perm   70 sec   (3273 perm/sec)   p_kst 3.262130e-01   p_cons 1.313043e-03   p_joint 1.049130e-02

Joint ci ratio: 8.330530e-02	ci left: 8.760671e-03	ci right 9.526254e-03	k: 2193	n:240000
Cons ci ratio: 2.207215e-01	ci left: 1.167688e-03	ci right 1.461235e-03	k: 314	n:240000
KS ci ratio: 1.149450e-02	ci left: 3.245366e-01	ci right 3.282926e-01	k: 78339	n:240000
DAXX   240000 perm   74 sec   (3227 perm/sec)   p_kst 3.264125e-01   p_cons 1.308333e-03   p_joint 9.137500e-03

Joint ci ratio: 8.297797e-02	ci left: 8.480697e-03	ci right 9.218758e-03	k: 2211	n:250000
Cons ci ratio: 2.149946e-01	ci left: 1.185272e-03	ci right 1.474488e-03	k: 331	n:250000
KS ci ratio: 1.125798e-02	ci left: 3.247417e-01	ci right 3.284223e-01	k: 81645	n:250000
DAXX   250000 perm   79 sec   (3183 perm/sec)   p_kst 3.265800e-01   p_cons 1.324000e-03   p_joint 8.844000e-03

Joint ci ratio: 8.299222e-02	ci left: 8.154459e-03	ci right 8.864255e-03	k: 2211	n:260000
Cons ci ratio: 2.109052e-01	ci left: 1.187018e-03	ci right 1.470439e-03	k: 344	n:260000
KS ci ratio: 1.103133e-02	ci left: 3.250970e-01	ci right 3.287069e-01	k: 84994	n:260000
DAXX   260000 perm   83 sec   (3138 perm/sec)   p_kst 3.269000e-01   p_cons 1.323077e-03   p_joint 8.503846e-03

Joint ci ratio: 8.346315e-02	ci left: 7.765338e-03	ci right 8.445284e-03	k: 2187	n:270000
Cons ci ratio: 2.070407e-01	ci left: 1.188683e-03	ci right 1.466643e-03	k: 357	n:270000
KS ci ratio: 1.083014e-02	ci left: 3.249272e-01	ci right 3.284691e-01	k: 88208	n:270000
DAXX   270000 perm   87 sec   (3096 perm/sec)   p_kst 3.266963e-01   p_cons 1.322222e-03   p_joint 8.100000e-03

Joint ci ratio: 8.330282e-02	ci left: 7.519438e-03	ci right 8.176525e-03	k: 2196	n:280000
Cons ci ratio: 2.025626e-01	ci left: 1.200444e-03	ci right 1.474331e-03	k: 373	n:280000
KS ci ratio: 1.064163e-02	ci left: 3.246846e-01	ci right 3.281618e-01	k: 91398	n:280000
DAXX   280000 perm   92 sec   (3055 perm/sec)   p_kst 3.264214e-01   p_cons 1.332143e-03   p_joint 7.842857e-03

Joint ci ratio: 8.304798e-02	ci left: 7.307385e-03	ci right 7.943893e-03	k: 2210	n:290000
Cons ci ratio: 1.988743e-01	ci left: 1.204899e-03	ci right 1.474190e-03	k: 387	n:290000
KS ci ratio: 1.044952e-02	ci left: 3.250103e-01	ci right 3.284277e-01	k: 94748	n:290000
DAXX   290000 perm   96 sec   (3014 perm/sec)   p_kst 3.267172e-01   p_cons 1.334483e-03   p_joint 7.620690e-03

Joint ci ratio: 7.939623e-02	ci left: 7.739863e-03	ci right 8.383028e-03	k: 2417	n:300000
Cons ci ratio: 1.951376e-01	ci left: 1.212270e-03	ci right 1.477513e-03	k: 402	n:300000
KS ci ratio: 1.027367e-02	ci left: 3.250484e-01	ci right 3.284083e-01	k: 98018	n:300000
DAXX   300000 perm   101 sec   (2975 perm/sec)   p_kst 3.267267e-01   p_cons 1.340000e-03   p_joint 8.056667e-03

Joint ci ratio: 7.797313e-02	ci left: 7.771643e-03	ci right 8.405347e-03	k: 2506	n:310000
Cons ci ratio: 1.906924e-01	ci left: 1.231496e-03	ci right 1.494097e-03	k: 421	n:310000
KS ci ratio: 1.010107e-02	ci left: 3.253164e-01	ci right 3.286223e-01	k: 101360	n:310000
DAXX   310000 perm   106 sec   (2936 perm/sec)   p_kst 3.269677e-01   p_cons 1.358065e-03   p_joint 8.083871e-03

Joint ci ratio: 9.590453e-02	ci left: 4.944579e-03	ci right 5.445696e-03	k: 1661	n:320000
Cons ci ratio: 1.873907e-01	ci left: 1.237669e-03	ci right 1.496496e-03	k: 436	n:320000
KS ci ratio: 9.968147e-03	ci left: 3.241887e-01	ci right 3.274395e-01	k: 104260	n:320000
DAXX   320000 perm   110 sec   (2899 perm/sec)   p_kst 3.258125e-01   p_cons 1.362500e-03   p_joint 5.190625e-03

Joint ci ratio: 9.611577e-02	ci left: 4.774020e-03	ci right 5.258977e-03	k: 1654	n:330000
Cons ci ratio: 1.852837e-01	ci left: 1.229053e-03	ci right 1.482864e-03	k: 446	n:330000
KS ci ratio: 9.816708e-03	ci left: 3.241798e-01	ci right 3.273808e-01	k: 107507	n:330000
DAXX   330000 perm   115 sec   (2864 perm/sec)   p_kst 3.257788e-01   p_cons 1.351515e-03   p_joint 5.012121e-03

Joint ci ratio: 9.528756e-02	ci left: 4.716854e-03	ci right 5.191644e-03	k: 1683	n:340000
Cons ci ratio: 1.834474e-01	ci left: 1.218153e-03	ci right 1.466942e-03	k: 455	n:340000
KS ci ratio: 9.667696e-03	ci left: 3.243657e-01	ci right 3.275197e-01	k: 110820	n:340000
DAXX   340000 perm   120 sec   (2828 perm/sec)   p_kst 3.259412e-01   p_cons 1.338235e-03   p_joint 4.950000e-03

Joint ci ratio: 9.520916e-02	ci left: 4.590439e-03	ci right 5.052103e-03	k: 1686	n:350000
Cons ci ratio: 1.814693e-01	ci left: 1.210614e-03	ci right 1.454905e-03	k: 465	n:350000
KS ci ratio: 9.526940e-03	ci left: 3.244642e-01	ci right 3.275730e-01	k: 114106	n:350000
DAXX   350000 perm   125 sec   (2794 perm/sec)   p_kst 3.260171e-01   p_cons 1.328571e-03   p_joint 4.817143e-03

Joint ci ratio: 9.410118e-02	ci left: 4.571406e-03	ci right 5.025510e-03	k: 1726	n:360000
Cons ci ratio: 1.799327e-01	ci left: 1.198202e-03	ci right 1.437718e-03	k: 473	n:360000
KS ci ratio: 9.391683e-03	ci left: 3.245798e-01	ci right 3.276452e-01	k: 117400	n:360000
DAXX   360000 perm   130 sec   (2761 perm/sec)   p_kst 3.261111e-01   p_cons 1.313889e-03   p_joint 4.794444e-03

Joint ci ratio: 9.769580e-02	ci left: 4.120707e-03	ci right 4.546573e-03	k: 1602	n:370000
Cons ci ratio: 1.775150e-01	ci left: 1.199382e-03	ci right 1.435566e-03	k: 486	n:370000
KS ci ratio: 9.262539e-03	ci left: 3.246651e-01	ci right 3.276890e-01	k: 120685	n:370000
DAXX   370000 perm   136 sec   (2729 perm/sec)   p_kst 3.261757e-01   p_cons 1.313514e-03   p_joint 4.329730e-03

Joint ci ratio: 1.016279e-01	ci left: 3.701739e-03	ci right 4.100621e-03	k: 1481	n:380000
Cons ci ratio: 1.757208e-01	ci left: 1.192971e-03	ci right 1.425266e-03	k: 496	n:380000
KS ci ratio: 9.135081e-03	ci left: 3.249144e-01	ci right 3.278987e-01	k: 124034	n:380000
DAXX   380000 perm   141 sec   (2696 perm/sec)   p_kst 3.264053e-01   p_cons 1.305263e-03   p_joint 3.897368e-03

Joint ci ratio: 1.004824e-01	ci left: 3.691798e-03	ci right 4.084860e-03	k: 1515	n:390000
Cons ci ratio: 1.743245e-01	ci left: 1.181996e-03	ci right 1.410132e-03	k: 504	n:390000
KS ci ratio: 9.016946e-03	ci left: 3.249463e-01	ci right 3.278921e-01	k: 127303	n:390000
DAXX   390000 perm   146 sec   (2664 perm/sec)   p_kst 3.264179e-01   p_cons 1.292308e-03   p_joint 3.884615e-03

Joint ci ratio: 9.216134e-02	ci left: 4.294929e-03	ci right 4.712299e-03	k: 1800	n:400000
Cons ci ratio: 1.712973e-01	ci left: 1.195501e-03	ci right 1.421823e-03	k: 522	n:400000
KS ci ratio: 8.902772e-03	ci left: 3.250019e-01	ci right 3.279107e-01	k: 130582	n:400000
DAXX   400000 perm   152 sec   (2633 perm/sec)   p_kst 3.264550e-01   p_cons 1.305000e-03   p_joint 4.500000e-03

Joint ci ratio: 9.175793e-02	ci left: 4.228295e-03	ci right 4.637294e-03	k: 1816	n:410000
Cons ci ratio: 1.693656e-01	ci left: 1.194363e-03	ci right 1.417659e-03	k: 534	n:410000
KS ci ratio: 8.796877e-03	ci left: 3.248527e-01	ci right 3.277254e-01	k: 133778	n:410000
DAXX   410000 perm   158 sec   (2603 perm/sec)   p_kst 3.262878e-01   p_cons 1.302439e-03   p_joint 4.429268e-03

Joint ci ratio: 9.424325e-02	ci left: 3.908986e-03	ci right 4.297905e-03	k: 1722	n:420000
Cons ci ratio: 1.671919e-01	ci left: 1.197855e-03	ci right 1.418641e-03	k: 548	n:420000
KS ci ratio: 8.692458e-03	ci left: 3.248226e-01	ci right 3.276608e-01	k: 137021	n:420000
DAXX   420000 perm   163 sec   (2574 perm/sec)   p_kst 3.262405e-01   p_cons 1.304762e-03   p_joint 4.100000e-03

Joint ci ratio: 9.348812e-02	ci left: 3.881664e-03	ci right 4.264601e-03	k: 1750	n:430000
Cons ci ratio: 1.653943e-01	ci left: 1.196743e-03	ci right 1.414717e-03	k: 560	n:430000
KS ci ratio: 8.590171e-03	ci left: 3.248708e-01	ci right 3.276758e-01	k: 140297	n:430000
DAXX   430000 perm   169 sec   (2546 perm/sec)   p_kst 3.262721e-01   p_cons 1.302326e-03   p_joint 4.069767e-03

Joint ci ratio: 8.085491e-02	ci left: 5.098723e-03	ci right 5.530558e-03	k: 2337	n:440000
Cons ci ratio: 1.633683e-01	ci left: 1.200054e-03	ci right 1.415690e-03	k: 574	n:440000
KS ci ratio: 8.491325e-03	ci left: 3.249215e-01	ci right 3.276945e-01	k: 143575	n:440000
DAXX   440000 perm   175 sec   (2519 perm/sec)   p_kst 3.263068e-01   p_cons 1.304545e-03   p_joint 5.311364e-03

Joint ci ratio: 8.113927e-02	ci left: 4.950567e-03	ci right 5.371399e-03	k: 2321	n:450000
Cons ci ratio: 1.623839e-01	ci left: 1.188307e-03	ci right 1.400420e-03	k: 581	n:450000
KS ci ratio: 8.396706e-03	ci left: 3.249235e-01	ci right 3.276654e-01	k: 146832	n:450000
DAXX   450000 perm   181 sec   (2491 perm/sec)   p_kst 3.262933e-01   p_cons 1.291111e-03   p_joint 5.157778e-03

Joint ci ratio: 8.024568e-02	ci left: 4.953709e-03	ci right 5.369953e-03	k: 2373	n:460000
Cons ci ratio: 1.615545e-01	ci left: 1.174989e-03	ci right 1.383549e-03	k: 587	n:460000
KS ci ratio: 8.306823e-03	ci left: 3.248387e-01	ci right 3.275505e-01	k: 150049	n:460000
DAXX   460000 perm   187 sec   (2464 perm/sec)   p_kst 3.261935e-01   p_cons 1.276087e-03   p_joint 5.158696e-03

Joint ci ratio: 7.944684e-02	ci left: 4.948399e-03	ci right 5.359866e-03	k: 2421	n:470000
Cons ci ratio: 1.601985e-01	ci left: 1.170409e-03	ci right 1.376244e-03	k: 597	n:470000
KS ci ratio: 8.217379e-03	ci left: 3.248852e-01	ci right 3.275680e-01	k: 153326	n:470000
DAXX   470000 perm   193 sec   (2437 perm/sec)   p_kst 3.262255e-01   p_cons 1.270213e-03   p_joint 5.151064e-03

Joint ci ratio: 7.859148e-02	ci left: 4.953542e-03	ci right 5.360799e-03	k: 2474	n:480000
Cons ci ratio: 1.584851e-01	ci left: 1.172029e-03	ci right 1.375735e-03	k: 610	n:480000
KS ci ratio: 8.130301e-03	ci left: 3.249549e-01	ci right 3.276097e-01	k: 156615	n:480000
DAXX   480000 perm   199 sec   (2412 perm/sec)   p_kst 3.262813e-01   p_cons 1.270833e-03   p_joint 5.154167e-03

Joint ci ratio: 7.962060e-02	ci left: 4.726399e-03	ci right 5.120306e-03	k: 2411	n:490000
Cons ci ratio: 1.565744e-01	ci left: 1.177515e-03	ci right 1.379476e-03	k: 625	n:490000
KS ci ratio: 8.044142e-03	ci left: 3.251197e-01	ci right 3.277476e-01	k: 159952	n:490000
DAXX   490000 perm   205 sec   (2387 perm/sec)   p_kst 3.264327e-01   p_cons 1.275510e-03   p_joint 4.920408e-03

Joint ci ratio: 8.654906e-02	ci left: 3.909105e-03	ci right 4.264679e-03	k: 2042	n:500000
Cons ci ratio: 1.549735e-01	ci left: 1.178952e-03	ci right 1.378899e-03	k: 638	n:500000
KS ci ratio: 7.962655e-03	ci left: 3.251683e-01	ci right 3.277698e-01	k: 163234	n:500000
DAXX   500000 perm   212 sec   (2363 perm/sec)   p_kst 3.264680e-01   p_cons 1.276000e-03   p_joint 4.084000e-03

Joint ci ratio: 8.076319e-02	ci left: 4.412283e-03	ci right 4.785536e-03	k: 2344	n:510000
Cons ci ratio: 1.534207e-01	ci left: 1.180342e-03	ci right 1.378335e-03	k: 651	n:510000
KS ci ratio: 7.879239e-03	ci left: 3.254579e-01	ci right 3.280343e-01	k: 166640	n:510000
DAXX   510000 perm   218 sec   (2337 perm/sec)   p_kst 3.267451e-01   p_cons 1.276471e-03   p_joint 4.596078e-03

Joint ci ratio: 8.018492e-02	ci left: 4.391499e-03	ci right 4.760208e-03	k: 2378	n:520000
Cons ci ratio: 1.526046e-01	ci left: 1.170588e-03	ci right 1.365806e-03	k: 658	n:520000
KS ci ratio: 7.804012e-03	ci left: 3.254195e-01	ci right 3.279709e-01	k: 169881	n:520000
DAXX   520000 perm   225 sec   (2314 perm/sec)   p_kst 3.266942e-01   p_cons 1.265385e-03   p_joint 4.573077e-03

Joint ci ratio: 8.110091e-02	ci left: 4.210641e-03	ci right 4.568395e-03	k: 2325	n:530000
Cons ci ratio: 1.514601e-01	ci left: 1.166652e-03	ci right 1.359621e-03	k: 668	n:530000
KS ci ratio: 7.729772e-03	ci left: 3.254468e-01	ci right 3.279740e-01	k: 173156	n:530000
DAXX   530000 perm   231 sec   (2291 perm/sec)   p_kst 3.267094e-01   p_cons 1.260377e-03   p_joint 4.386792e-03

Joint ci ratio: 8.065274e-02	ci left: 4.179838e-03	ci right 4.532920e-03	k: 2351	n:540000
Cons ci ratio: 1.503410e-01	ci left: 1.162866e-03	ci right 1.353660e-03	k: 678	n:540000
KS ci ratio: 7.659965e-03	ci left: 3.253381e-01	ci right 3.278416e-01	k: 176358	n:540000
DAXX   540000 perm   238 sec   (2269 perm/sec)   p_kst 3.265889e-01   p_cons 1.255556e-03   p_joint 4.353704e-03

Joint ci ratio: 6.741948e-02	ci left: 5.903067e-03	ci right 6.316707e-03	k: 3359	n:550000
Cons ci ratio: 1.492464e-01	ci left: 1.159223e-03	ci right 1.347911e-03	k: 688	n:550000
KS ci ratio: 7.591136e-03	ci left: 3.252843e-01	ci right 3.277648e-01	k: 179588	n:550000
DAXX   550000 perm   245 sec   (2246 perm/sec)   p_kst 3.265236e-01   p_cons 1.250909e-03   p_joint 6.107273e-03

Joint ci ratio: 6.713234e-02	ci left: 5.848564e-03	ci right 6.256572e-03	k: 3388	n:560000
Cons ci ratio: 1.472293e-01	ci left: 1.171194e-03	ci right 1.359027e-03	k: 707	n:560000
KS ci ratio: 7.521595e-03	ci left: 3.253806e-01	ci right 3.278390e-01	k: 182901	n:560000
DAXX   560000 perm   252 sec   (2224 perm/sec)   p_kst 3.266089e-01   p_cons 1.262500e-03   p_joint 6.050000e-03

Joint ci ratio: 6.648772e-02	ci left: 5.859814e-03	ci right 6.264530e-03	k: 3454	n:570000
Cons ci ratio: 1.459974e-01	ci left: 1.170927e-03	ci right 1.357009e-03	k: 719	n:570000
KS ci ratio: 7.453187e-03	ci left: 3.255175e-01	ci right 3.279544e-01	k: 186239	n:570000
DAXX   570000 perm   259 sec   (2203 perm/sec)   p_kst 3.267351e-01   p_cons 1.261404e-03   p_joint 6.059649e-03

Joint ci ratio: 6.247820e-02	ci left: 6.530696e-03	ci right 6.953564e-03	k: 3909	n:580000
Cons ci ratio: 1.450938e-01	ci left: 1.165690e-03	ci right 1.349694e-03	k: 728	n:580000
KS ci ratio: 7.390868e-03	ci left: 3.253965e-01	ci right 3.278121e-01	k: 189430	n:580000
DAXX   580000 perm   266 sec   (2182 perm/sec)   p_kst 3.266034e-01   p_cons 1.255172e-03   p_joint 6.739655e-03

Joint ci ratio: 6.291246e-02	ci left: 6.331563e-03	ci right 6.744491e-03	k: 3856	n:590000
Cons ci ratio: 1.442068e-01	ci left: 1.160635e-03	ci right 1.342624e-03	k: 737	n:590000
KS ci ratio: 7.328701e-03	ci left: 3.253627e-01	ci right 3.277576e-01	k: 192670	n:590000
DAXX   590000 perm   273 sec   (2162 perm/sec)   p_kst 3.265593e-01   p_cons 1.249153e-03   p_joint 6.535593e-03

Joint ci ratio: 6.238097e-02	ci left: 6.334314e-03	ci right 6.743806e-03	k: 3922	n:600000
Cons ci ratio: 1.425735e-01	ci left: 1.168608e-03	ci right 1.349596e-03	k: 754	n:600000
KS ci ratio: 7.268050e-03	ci left: 3.253318e-01	ci right 3.277066e-01	k: 195911	n:600000
DAXX   600000 perm   280 sec   (2143 perm/sec)   p_kst 3.265183e-01   p_cons 1.256667e-03   p_joint 6.536667e-03

Joint ci ratio: 6.305925e-02	ci left: 6.096518e-03	ci right 6.495078e-03	k: 3839	n:610000
Cons ci ratio: 1.416389e-01	ci left: 1.165261e-03	ci right 1.344448e-03	k: 764	n:610000
KS ci ratio: 7.211648e-03	ci left: 3.251332e-01	ci right 3.274881e-01	k: 199049	n:610000
DAXX   610000 perm   287 sec   (2124 perm/sec)   p_kst 3.263098e-01   p_cons 1.252459e-03   p_joint 6.293443e-03

Joint ci ratio: 6.497110e-02	ci left: 5.647397e-03	ci right 6.028210e-03	k: 3618	n:620000
Cons ci ratio: 1.403602e-01	ci left: 1.168251e-03	ci right 1.346139e-03	k: 778	n:620000
KS ci ratio: 7.151971e-03	ci left: 3.252216e-01	ci right 3.275575e-01	k: 202361	n:620000
DAXX   620000 perm   295 sec   (2105 perm/sec)   p_kst 3.263887e-01   p_cons 1.254839e-03   p_joint 5.835484e-03

Joint ci ratio: 6.533829e-02	ci left: 5.495285e-03	ci right 5.868013e-03	k: 3578	n:630000
Cons ci ratio: 1.391155e-01	ci left: 1.171152e-03	ci right 1.347771e-03	k: 792	n:630000
KS ci ratio: 7.093546e-03	ci left: 3.253199e-01	ci right 3.276373e-01	k: 205681	n:630000
DAXX   630000 perm   302 sec   (2085 perm/sec)   p_kst 3.264778e-01   p_cons 1.257143e-03   p_joint 5.679365e-03

Joint ci ratio: 6.478829e-02	ci left: 5.503183e-03	ci right 5.873188e-03	k: 3639	n:640000
Cons ci ratio: 1.379890e-01	ci left: 1.172462e-03	ci right 1.347728e-03	k: 805	n:640000
KS ci ratio: 7.037054e-03	ci left: 3.253824e-01	ci right 3.276817e-01	k: 208980	n:640000
DAXX   640000 perm   310 sec   (2066 perm/sec)   p_kst 3.265312e-01   p_cons 1.257813e-03   p_joint 5.685938e-03

Joint ci ratio: 6.453312e-02	ci left: 5.462409e-03	ci right 5.828172e-03	k: 3668	n:650000
Cons ci ratio: 1.373943e-01	ci left: 1.164822e-03	ci right 1.338134e-03	k: 812	n:650000
KS ci ratio: 6.981866e-03	ci left: 3.254446e-01	ci right 3.277262e-01	k: 212280	n:650000
DAXX   650000 perm   317 sec   (2048 perm/sec)   p_kst 3.265846e-01   p_cons 1.249231e-03   p_joint 5.643077e-03

Joint ci ratio: 6.937921e-02	ci left: 4.646586e-03	ci right 4.982026e-03	k: 3176	n:660000
Cons ci ratio: 1.358976e-01	ci left: 1.173514e-03	ci right 1.346063e-03	k: 830	n:660000
KS ci ratio: 6.928887e-03	ci left: 3.254459e-01	ci right 3.277102e-01	k: 215541	n:660000
DAXX   660000 perm   325 sec   (2030 perm/sec)   p_kst 3.265773e-01   p_cons 1.257576e-03   p_joint 4.812121e-03

Joint ci ratio: 7.086493e-02	ci left: 4.385119e-03	ci right 4.708740e-03	k: 3045	n:670000
Cons ci ratio: 1.354103e-01	ci left: 1.164649e-03	ci right 1.335232e-03	k: 836	n:670000
KS ci ratio: 6.877120e-03	ci left: 3.254458e-01	ci right 3.276931e-01	k: 218801	n:670000
DAXX   670000 perm   333 sec   (2012 perm/sec)   p_kst 3.265687e-01   p_cons 1.247761e-03   p_joint 4.544776e-03

Joint ci ratio: 7.048480e-02	ci left: 4.368302e-03	ci right 4.688883e-03	k: 3078	n:680000
Cons ci ratio: 1.345293e-01	ci left: 1.163152e-03	ci right 1.332319e-03	k: 847	n:680000
KS ci ratio: 6.827203e-03	ci left: 3.254001e-01	ci right 3.276308e-01	k: 222030	n:680000
DAXX   680000 perm   341 sec   (1995 perm/sec)   p_kst 3.265147e-01   p_cons 1.245588e-03   p_joint 4.526471e-03

Joint ci ratio: 6.995283e-02	ci left: 4.371914e-03	ci right 4.690239e-03	k: 3125	n:690000
Cons ci ratio: 1.335875e-01	ci left: 1.163103e-03	ci right 1.330984e-03	k: 859	n:690000
KS ci ratio: 6.777264e-03	ci left: 3.254269e-01	ci right 3.276413e-01	k: 225308	n:690000
DAXX   690000 perm   349 sec   (1978 perm/sec)   p_kst 3.265333e-01   p_cons 1.244928e-03   p_joint 4.528986e-03

Joint ci ratio: 6.954289e-02	ci left: 4.361392e-03	ci right 4.677016e-03	k: 3162	n:700000
Cons ci ratio: 1.331245e-01	ci left: 1.154773e-03	ci right 1.320828e-03	k: 865	n:700000
KS ci ratio: 6.729213e-03	ci left: 3.254001e-01	ci right 3.275985e-01	k: 228549	n:700000
DAXX   700000 perm   357 sec   (1961 perm/sec)   p_kst 3.264986e-01   p_cons 1.235714e-03   p_joint 4.517143e-03

Joint ci ratio: 7.963195e-02	ci left: 3.265925e-03	ci right 3.538151e-03	k: 2414	n:710000
Cons ci ratio: 1.325142e-01	ci left: 1.149401e-03	ci right 1.313867e-03	k: 873	n:710000
KS ci ratio: 6.692369e-03	ci left: 3.247042e-01	ci right 3.268859e-01	k: 231314	n:710000
DAXX   710000 perm   365 sec   (1945 perm/sec)   p_kst 3.257944e-01   p_cons 1.229577e-03   p_joint 3.400000e-03

Joint ci ratio: 7.901252e-02	ci left: 3.272296e-03	ci right 3.542834e-03	k: 2452	n:720000
Cons ci ratio: 1.316883e-01	ci left: 1.148210e-03	ci right 1.311401e-03	k: 884	n:720000
KS ci ratio: 6.645038e-03	ci left: 3.247577e-01	ci right 3.269243e-01	k: 234605	n:720000
DAXX   720000 perm   373 sec   (1928 perm/sec)   p_kst 3.258403e-01   p_cons 1.227778e-03   p_joint 3.405556e-03

Joint ci ratio: 7.848641e-02	ci left: 3.271786e-03	ci right 3.540398e-03	k: 2485	n:730000
Cons ci ratio: 1.306587e-01	ci left: 1.151030e-03	ci right 1.313243e-03	k: 898	n:730000
KS ci ratio: 6.602010e-03	ci left: 3.245894e-01	ci right 3.267408e-01	k: 237735	n:730000
DAXX   730000 perm   382 sec   (1912 perm/sec)   p_kst 3.256644e-01   p_cons 1.230137e-03   p_joint 3.404110e-03

Joint ci ratio: 7.236223e-02	ci left: 3.807029e-03	ci right 4.094173e-03	k: 2922	n:740000
Cons ci ratio: 1.299382e-01	ci left: 1.148549e-03	ci right 1.309451e-03	k: 908	n:740000
KS ci ratio: 6.557021e-03	ci left: 3.246120e-01	ci right 3.267488e-01	k: 241003	n:740000
DAXX   740000 perm   390 sec   (1897 perm/sec)   p_kst 3.256797e-01   p_cons 1.227027e-03   p_joint 3.948649e-03

Joint ci ratio: 7.336620e-02	ci left: 3.652844e-03	ci right 3.932343e-03	k: 2843	n:750000
Cons ci ratio: 1.290890e-01	ci left: 1.148716e-03	ci right 1.308510e-03	k: 920	n:750000
KS ci ratio: 6.511280e-03	ci left: 3.247460e-01	ci right 3.268687e-01	k: 244355	n:750000
DAXX   750000 perm   399 sec   (1881 perm/sec)   p_kst 3.258067e-01   p_cons 1.226667e-03   p_joint 3.790667e-03

Joint ci ratio: 7.285554e-02	ci left: 3.656450e-03	ci right 3.934195e-03	k: 2883	n:760000
Cons ci ratio: 1.283250e-01	ci left: 1.147609e-03	ci right 1.306232e-03	k: 931	n:760000
KS ci ratio: 6.467043e-03	ci left: 3.248383e-01	ci right 3.269472e-01	k: 247678	n:760000
DAXX   760000 perm   407 sec   (1866 perm/sec)   p_kst 3.258921e-01   p_cons 1.225000e-03   p_joint 3.793421e-03

Joint ci ratio: 7.243003e-02	ci left: 3.652317e-03	ci right 3.928060e-03	k: 2917	n:770000
Cons ci ratio: 1.273718e-01	ci left: 1.150306e-03	ci right 1.308031e-03	k: 945	n:770000
KS ci ratio: 6.425082e-03	ci left: 3.248336e-01	ci right 3.269287e-01	k: 250928	n:770000
DAXX   770000 perm   416 sec   (1851 perm/sec)   p_kst 3.258805e-01   p_cons 1.227273e-03   p_joint 3.788312e-03

Joint ci ratio: 6.571631e-02	ci left: 4.391759e-03	ci right 4.691426e-03	k: 3541	n:780000
Cons ci ratio: 1.267041e-01	ci left: 1.147971e-03	ci right 1.304489e-03	k: 955	n:780000
KS ci ratio: 6.382735e-03	ci left: 3.249111e-01	ci right 3.269928e-01	k: 254242	n:780000
DAXX   780000 perm   425 sec   (1836 perm/sec)   p_kst 3.259513e-01   p_cons 1.224359e-03   p_joint 4.539744e-03

Joint ci ratio: 6.719183e-02	ci left: 4.145696e-03	ci right 4.435172e-03	k: 3388	n:790000
Cons ci ratio: 1.260467e-01	ci left: 1.145698e-03	ci right 1.301035e-03	k: 965	n:790000
KS ci ratio: 6.343790e-03	ci left: 3.248083e-01	ci right 3.268766e-01	k: 257415	n:790000
DAXX   790000 perm   434 sec   (1822 perm/sec)   p_kst 3.258418e-01   p_cons 1.221519e-03   p_joint 4.288608e-03

Joint ci ratio: 6.900630e-02	ci left: 3.878831e-03	ci right 4.157279e-03	k: 3213	n:800000
Cons ci ratio: 1.251430e-01	ci left: 1.148327e-03	ci right 1.302821e-03	k: 979	n:800000
KS ci ratio: 6.304204e-03	ci left: 3.248017e-01	ci right 3.268570e-01	k: 260663	n:800000
DAXX   800000 perm   442 sec   (1808 perm/sec)   p_kst 3.258288e-01   p_cons 1.223750e-03   p_joint 4.016250e-03

Joint ci ratio: 6.866566e-02	ci left: 3.869770e-03	ci right 4.146142e-03	k: 3245	n:810000
Cons ci ratio: 1.244466e-01	ci left: 1.147306e-03	ci right 1.300741e-03	k: 990	n:810000
KS ci ratio: 6.263748e-03	ci left: 3.249077e-01	ci right 3.269504e-01	k: 264002	n:810000
DAXX   810000 perm   451 sec   (1794 perm/sec)   p_kst 3.259284e-01   p_cons 1.222222e-03   p_joint 4.006173e-03

Joint ci ratio: 6.823603e-02	ci left: 3.871722e-03	ci right 4.146434e-03	k: 3286	n:820000
Cons ci ratio: 1.238236e-01	ci left: 1.145131e-03	ci right 1.297452e-03	k: 1000	n:820000
KS ci ratio: 6.225546e-03	ci left: 3.249062e-01	ci right 3.269365e-01	k: 267255	n:820000
DAXX   820000 perm   460 sec   (1781 perm/sec)   p_kst 3.259207e-01   p_cons 1.219512e-03   p_joint 4.007317e-03

Joint ci ratio: 6.981175e-02	ci left: 3.652192e-03	ci right 3.917555e-03	k: 3140	n:830000
Cons ci ratio: 1.230881e-01	ci left: 1.145346e-03	ci right 1.296724e-03	k: 1012	n:830000
KS ci ratio: 6.188017e-03	ci left: 3.249061e-01	ci right 3.269240e-01	k: 270509	n:830000
DAXX   830000 perm   470 sec   (1767 perm/sec)   p_kst 3.259145e-01   p_cons 1.219277e-03   p_joint 3.783133e-03

Joint ci ratio: 6.943711e-02	ci left: 3.648485e-03	ci right 3.912098e-03	k: 3174	n:840000
Cons ci ratio: 1.226653e-01	ci left: 1.139787e-03	ci right 1.289877e-03	k: 1019	n:840000
KS ci ratio: 6.151143e-03	ci left: 3.249072e-01	ci right 3.269131e-01	k: 273764	n:840000
DAXX   840000 perm   479 sec   (1753 perm/sec)   p_kst 3.259095e-01   p_cons 1.213095e-03   p_joint 3.778571e-03

Joint ci ratio: 6.906843e-02	ci left: 3.644869e-03	ci right 3.906766e-03	k: 3208	n:850000
Cons ci ratio: 1.220686e-01	ci left: 1.137783e-03	ci right 1.286826e-03	k: 1029	n:850000
KS ci ratio: 6.115264e-03	ci left: 3.248836e-01	ci right 3.268776e-01	k: 276998	n:850000
DAXX   850000 perm   488 sec   (1740 perm/sec)   p_kst 3.258800e-01   p_cons 1.210588e-03   p_joint 3.774118e-03

Joint ci ratio: 6.912403e-02	ci left: 3.596770e-03	ci right 3.855428e-03	k: 3203	n:860000
Cons ci ratio: 1.211311e-01	ci left: 1.142592e-03	ci right 1.291033e-03	k: 1045	n:860000
KS ci ratio: 6.079136e-03	ci left: 3.249233e-01	ci right 3.269057e-01	k: 280286	n:860000
DAXX   860000 perm   498 sec   (1728 perm/sec)   p_kst 3.259140e-01   p_cons 1.215116e-03   p_joint 3.724419e-03

Joint ci ratio: 6.881364e-02	ci left: 3.588186e-03	ci right 3.845021e-03	k: 3232	n:870000
Cons ci ratio: 1.206136e-01	ci left: 1.139490e-03	ci right 1.286851e-03	k: 1054	n:870000
KS ci ratio: 6.044669e-03	ci left: 3.248875e-01	ci right 3.268584e-01	k: 283509	n:870000
DAXX   870000 perm   507 sec   (1715 perm/sec)   p_kst 3.258724e-01   p_cons 1.211494e-03   p_joint 3.714943e-03

Joint ci ratio: 7.122099e-02	ci left: 3.308468e-03	ci right 3.553909e-03	k: 3018	n:880000
Cons ci ratio: 1.201026e-01	ci left: 1.136461e-03	ci right 1.282763e-03	k: 1063	n:880000
KS ci ratio: 6.010704e-03	ci left: 3.248583e-01	ci right 3.268179e-01	k: 286737	n:880000
DAXX   880000 perm   517 sec   (1702 perm/sec)   p_kst 3.258375e-01   p_cons 1.207955e-03   p_joint 3.429545e-03

Joint ci ratio: 7.314346e-02	ci left: 3.099165e-03	ci right 3.335548e-03	k: 2862	n:890000
Cons ci ratio: 1.194310e-01	ci left: 1.136771e-03	ci right 1.282237e-03	k: 1075	n:890000
KS ci ratio: 5.977474e-03	ci left: 3.248173e-01	ci right 3.267658e-01	k: 289954	n:890000
DAXX   890000 perm   527 sec   (1690 perm/sec)   p_kst 3.257910e-01   p_cons 1.207865e-03   p_joint 3.215730e-03

Joint ci ratio: 7.276332e-02	ci left: 3.097455e-03	ci right 3.332427e-03	k: 2892	n:900000
Cons ci ratio: 1.188252e-01	ci left: 1.135998e-03	ci right 1.280576e-03	k: 1086	n:900000
KS ci ratio: 5.945059e-03	ci left: 3.247573e-01	ci right 3.266949e-01	k: 293153	n:900000
DAXX   900000 perm   536 sec   (1678 perm/sec)   p_kst 3.257256e-01   p_cons 1.206667e-03   p_joint 3.213333e-03

Joint ci ratio: 7.352052e-02	ci left: 2.999762e-03	ci right 3.229793e-03	k: 2833	n:910000
Cons ci ratio: 1.182825e-01	ci left: 1.134178e-03	ci right 1.277819e-03	k: 1096	n:910000
KS ci ratio: 5.911538e-03	ci left: 3.248195e-01	ci right 3.267464e-01	k: 296462	n:910000
DAXX   910000 perm   546 sec   (1666 perm/sec)   p_kst 3.257824e-01   p_cons 1.204396e-03   p_joint 3.113187e-03

Joint ci ratio: 7.317295e-02	ci left: 2.995965e-03	ci right 3.224573e-03	k: 2860	n:920000
Cons ci ratio: 1.179073e-01	ci left: 1.129233e-03	ci right 1.271763e-03	k: 1103	n:920000
KS ci ratio: 5.879422e-03	ci left: 3.248173e-01	ci right 3.267338e-01	k: 299713	n:920000
DAXX   920000 perm   556 sec   (1655 perm/sec)   p_kst 3.257750e-01   p_cons 1.198913e-03   p_joint 3.108696e-03

Joint ci ratio: 7.288091e-02	ci left: 2.988029e-03	ci right 3.215083e-03	k: 2883	n:930000
Cons ci ratio: 1.172191e-01	ci left: 1.130659e-03	ci right 1.272477e-03	k: 1116	n:930000
KS ci ratio: 5.847995e-03	ci left: 3.248024e-01	ci right 3.267084e-01	k: 302952	n:930000
DAXX   930000 perm   566 sec   (1643 perm/sec)   p_kst 3.257548e-01   p_cons 1.200000e-03   p_joint 3.100000e-03

Joint ci ratio: 7.247987e-02	ci left: 2.989666e-03	ci right 3.215541e-03	k: 2915	n:940000
Cons ci ratio: 1.166462e-01	ci left: 1.129990e-03	ci right 1.270985e-03	k: 1127	n:940000
KS ci ratio: 5.815743e-03	ci left: 3.248876e-01	ci right 3.267836e-01	k: 306285	n:940000
DAXX   940000 perm   576 sec   (1631 perm/sec)   p_kst 3.258351e-01   p_cons 1.198936e-03   p_joint 3.101064e-03

Joint ci ratio: 7.214678e-02	ci left: 2.986103e-03	ci right 3.210628e-03	k: 2942	n:950000
Cons ci ratio: 1.159289e-01	ci left: 1.132404e-03	ci right 1.272771e-03	k: 1141	n:950000
KS ci ratio: 5.785391e-03	ci left: 3.248670e-01	ci right 3.267530e-01	k: 309519	n:950000
DAXX   950000 perm   587 sec   (1620 perm/sec)   p_kst 3.258095e-01   p_cons 1.201053e-03   p_joint 3.096842e-03

Joint ci ratio: 7.172141e-02	ci left: 2.990800e-03	ci right 3.214298e-03	k: 2977	n:960000
Cons ci ratio: 1.153746e-01	ci left: 1.131735e-03	ci right 1.271303e-03	k: 1152	n:960000
KS ci ratio: 5.754008e-03	ci left: 3.249614e-01	ci right 3.268376e-01	k: 312863	n:960000
DAXX   960000 perm   597 sec   (1608 perm/sec)   p_kst 3.258990e-01   p_cons 1.200000e-03   p_joint 3.101042e-03

Joint ci ratio: 7.148219e-02	ci left: 2.980216e-03	ci right 3.202149e-03	k: 2997	n:970000
Cons ci ratio: 1.147296e-01	ci left: 1.133084e-03	ci right 1.271984e-03	k: 1165	n:970000
KS ci ratio: 5.724553e-03	ci left: 3.249446e-01	ci right 3.268111e-01	k: 316101	n:970000
DAXX   970000 perm   607 sec   (1597 perm/sec)   p_kst 3.258773e-01   p_cons 1.201031e-03   p_joint 3.089691e-03

Joint ci ratio: 7.100971e-02	ci left: 2.989895e-03	ci right 3.211017e-03	k: 3037	n:980000
Cons ci ratio: 1.143382e-01	ci left: 1.129451e-03	ci right 1.267402e-03	k: 1173	n:980000
KS ci ratio: 5.693946e-03	ci left: 3.250516e-01	ci right 3.269087e-01	k: 319460	n:980000
DAXX   980000 perm   618 sec   (1586 perm/sec)   p_kst 3.259796e-01   p_cons 1.196939e-03   p_joint 3.098980e-03

Joint ci ratio: 7.068483e-02	ci left: 2.987476e-03	ci right 3.207366e-03	k: 3065	n:990000
Cons ci ratio: 1.135667e-01	ci left: 1.133743e-03	ci right 1.271222e-03	k: 1189	n:990000
KS ci ratio: 5.664827e-03	ci left: 3.250787e-01	ci right 3.269264e-01	k: 322742	n:990000
DAXX   990000 perm   628 sec   (1576 perm/sec)   p_kst 3.260020e-01   p_cons 1.201010e-03   p_joint 3.095960e-03

Joint ci ratio: 7.039861e-02	ci left: 2.982160e-03	ci right 3.200734e-03	k: 3090	n:1000000
Cons ci ratio: 1.130455e-01	ci left: 1.133094e-03	ci right 1.269821e-03	k: 1200	n:1000000
KS ci ratio: 5.636816e-03	ci left: 3.250533e-01	ci right 3.268917e-01	k: 325972	n:1000000
DAXX   1000000 perm   639 sec   (1566 perm/sec)   p_kst 3.259720e-01   p_cons 1.200000e-03   p_joint 3.090000e-03

Joint ci ratio: 7.000326e-02	ci left: 2.986679e-03	ci right 3.204305e-03	k: 3125	n:1010000
Cons ci ratio: 1.124386e-01	ci left: 1.134384e-03	ci right 1.270483e-03	k: 1213	n:1010000
KS ci ratio: 5.609812e-03	ci left: 3.249820e-01	ci right 3.268111e-01	k: 329155	n:1010000
DAXX   1010000 perm   649 sec   (1556 perm/sec)   p_kst 3.258960e-01   p_cons 1.200990e-03   p_joint 3.094059e-03

Joint ci ratio: 6.973631e-02	ci left: 2.980516e-03	ci right 3.196831e-03	k: 3149	n:1020000
Cons ci ratio: 1.118870e-01	ci left: 1.134697e-03	ci right 1.270122e-03	k: 1225	n:1020000
KS ci ratio: 5.582157e-03	ci left: 3.249933e-01	ci right 3.268135e-01	k: 332421	n:1020000
DAXX   1020000 perm   660 sec   (1545 perm/sec)   p_kst 3.259029e-01   p_cons 1.200980e-03   p_joint 3.087255e-03

Joint ci ratio: 6.943948e-02	ci left: 2.977336e-03	ci right 3.192464e-03	k: 3176	n:1030000
Cons ci ratio: 1.114787e-01	ci left: 1.132174e-03	ci right 1.266772e-03	k: 1234	n:1030000
KS ci ratio: 5.555755e-03	ci left: 3.249376e-01	ci right 3.267488e-01	k: 335618	n:1030000
DAXX   1030000 perm   671 sec   (1534 perm/sec)   p_kst 3.258427e-01   p_cons 1.198058e-03   p_joint 3.083495e-03

Joint ci ratio: 6.903842e-02	ci left: 2.983669e-03	ci right 3.197959e-03	k: 3213	n:1040000
Cons ci ratio: 1.108520e-01	ci left: 1.134375e-03	ci right 1.268427e-03	k: 1248	n:1040000
KS ci ratio: 5.528695e-03	ci left: 3.249646e-01	ci right 3.267671e-01	k: 338900	n:1040000
DAXX   1040000 perm   682 sec   (1524 perm/sec)   p_kst 3.258654e-01   p_cons 1.200000e-03   p_joint 3.089423e-03

Joint ci ratio: 6.868662e-02	ci left: 2.986141e-03	ci right 3.199472e-03	k: 3246	n:1050000
Cons ci ratio: 1.102358e-01	ci left: 1.136537e-03	ci right 1.270049e-03	k: 1262	n:1050000
KS ci ratio: 5.502623e-03	ci left: 3.249435e-01	ci right 3.267374e-01	k: 342132	n:1050000
DAXX   1050000 perm   693 sec   (1515 perm/sec)   p_kst 3.258400e-01   p_cons 1.201905e-03   p_joint 3.091429e-03

Joint ci ratio: 6.861348e-02	ci left: 2.964459e-03	ci right 3.176007e-03	k: 3253	n:1060000
Cons ci ratio: 1.096728e-01	ci left: 1.137741e-03	ci right 1.270669e-03	k: 1275	n:1060000
KS ci ratio: 5.475917e-03	ci left: 3.250030e-01	ci right 3.267885e-01	k: 345449	n:1060000
DAXX   1060000 perm   704 sec   (1505 perm/sec)   p_kst 3.258953e-01   p_cons 1.202830e-03   p_joint 3.068868e-03

Joint ci ratio: 6.693316e-02	ci left: 3.088353e-03	ci right 3.303136e-03	k: 3418	n:1070000
Cons ci ratio: 1.092032e-01	ci left: 1.137107e-03	ci right 1.269355e-03	k: 1286	n:1070000
KS ci ratio: 5.450616e-03	ci left: 3.249792e-01	ci right 3.267563e-01	k: 348678	n:1070000
DAXX   1070000 perm   716 sec   (1495 perm/sec)   p_kst 3.258673e-01   p_cons 1.201869e-03   p_joint 3.194393e-03

Joint ci ratio: 6.669972e-02	ci left: 3.081608e-03	ci right 3.295145e-03	k: 3442	n:1080000
Cons ci ratio: 1.089077e-01	ci left: 1.132883e-03	ci right 1.264260e-03	k: 1293	n:1080000
KS ci ratio: 5.424862e-03	ci left: 3.250207e-01	ci right 3.267895e-01	k: 351977	n:1080000
DAXX   1080000 perm   727 sec   (1485 perm/sec)   p_kst 3.259046e-01   p_cons 1.197222e-03   p_joint 3.187037e-03

Joint ci ratio: 6.628673e-02	ci left: 3.092130e-03	ci right 3.305019e-03	k: 3485	n:1090000
Cons ci ratio: 1.081990e-01	ci left: 1.137663e-03	ci right 1.268681e-03	k: 1310	n:1090000
KS ci ratio: 5.400744e-03	ci left: 3.249578e-01	ci right 3.267184e-01	k: 355163	n:1090000
DAXX   1090000 perm   738 sec   (1476 perm/sec)   p_kst 3.258376e-01   p_cons 1.201835e-03   p_joint 3.197248e-03

Joint ci ratio: 6.600339e-02	ci left: 3.090841e-03	ci right 3.302697e-03	k: 3515	n:1100000
Cons ci ratio: 1.078296e-01	ci left: 1.135281e-03	ci right 1.265550e-03	k: 1319	n:1100000
KS ci ratio: 5.375943e-03	ci left: 3.249778e-01	ci right 3.267304e-01	k: 358439	n:1100000
DAXX   1100000 perm   750 sec   (1467 perm/sec)   p_kst 3.258536e-01   p_cons 1.199091e-03   p_joint 3.195455e-03

Joint ci ratio: 6.220530e-02	ci left: 3.453950e-03	ci right 3.676581e-03	k: 3956	n:1110000
Cons ci ratio: 1.073428e-01	ci left: 1.135573e-03	ci right 1.265250e-03	k: 1331	n:1110000
KS ci ratio: 5.351162e-03	ci left: 3.250236e-01	ci right 3.267683e-01	k: 361744	n:1110000
DAXX   1110000 perm   762 sec   (1458 perm/sec)   p_kst 3.258955e-01   p_cons 1.199099e-03   p_joint 3.563964e-03

Joint ci ratio: 6.403468e-02	ci left: 3.228012e-03	ci right 3.442426e-03	k: 3734	n:1120000
Cons ci ratio: 1.066245e-01	ci left: 1.141076e-03	ci right 1.270455e-03	k: 1349	n:1120000
KS ci ratio: 5.326905e-03	ci left: 3.250534e-01	ci right 3.267904e-01	k: 365032	n:1120000
DAXX   1120000 perm   773 sec   (1448 perm/sec)   p_kst 3.259214e-01   p_cons 1.204464e-03   p_joint 3.333929e-03

Joint ci ratio: 5.776147e-02	ci left: 3.942017e-03	ci right 4.177351e-03	k: 4586	n:1130000
Cons ci ratio: 1.061928e-01	ci left: 1.140453e-03	ci right 1.269205e-03	k: 1360	n:1130000
KS ci ratio: 5.303360e-03	ci left: 3.250508e-01	ci right 3.267801e-01	k: 368284	n:1130000
DAXX   1130000 perm   785 sec   (1440 perm/sec)   p_kst 3.259150e-01   p_cons 1.203540e-03   p_joint 4.058407e-03

Joint ci ratio: 5.754875e-02	ci left: 3.936832e-03	ci right 4.170962e-03	k: 4620	n:1140000
Cons ci ratio: 1.059598e-01	ci left: 1.135572e-03	ci right 1.263475e-03	k: 1366	n:1140000
KS ci ratio: 5.280092e-03	ci left: 3.250510e-01	ci right 3.267727e-01	k: 371539	n:1140000
DAXX   1140000 perm   797 sec   (1431 perm/sec)   p_kst 3.259114e-01   p_cons 1.198246e-03   p_joint 4.052632e-03

Joint ci ratio: 5.728279e-02	ci left: 3.939453e-03	ci right 4.172621e-03	k: 4663	n:1150000
Cons ci ratio: 1.054212e-01	ci left: 1.137550e-03	ci right 1.264983e-03	k: 1380	n:1150000
KS ci ratio: 5.256035e-03	ci left: 3.251424e-01	ci right 3.268567e-01	k: 374899	n:1150000
DAXX   1150000 perm   809 sec   (1422 perm/sec)   p_kst 3.259991e-01   p_cons 1.200000e-03   p_joint 4.054783e-03

Joint ci ratio: 5.956433e-02	ci left: 3.609005e-03	ci right 3.831415e-03	k: 4314	n:1160000
Cons ci ratio: 1.049285e-01	ci left: 1.138656e-03	ci right 1.265580e-03	k: 1393	n:1160000
KS ci ratio: 5.233167e-03	ci left: 3.251599e-01	ci right 3.268668e-01	k: 378175	n:1160000
DAXX   1160000 perm   821 sec   (1413 perm/sec)   p_kst 3.260129e-01   p_cons 1.200862e-03   p_joint 3.718966e-03

Joint ci ratio: 5.929008e-02	ci left: 3.611839e-03	ci right 3.833364e-03	k: 4354	n:1170000
Cons ci ratio: 1.042573e-01	ci left: 1.143906e-03	ci right 1.270550e-03	k: 1411	n:1170000
KS ci ratio: 5.211810e-03	ci left: 3.250746e-01	ci right 3.267741e-01	k: 381331	n:1170000
DAXX   1170000 perm   833 sec   (1405 perm/sec)   p_kst 3.259239e-01   p_cons 1.205983e-03   p_joint 3.721368e-03

Joint ci ratio: 5.929102e-02	ci left: 3.581229e-03	ci right 3.800879e-03	k: 4354	n:1180000
Cons ci ratio: 1.039633e-01	ci left: 1.140815e-03	ci right 1.266739e-03	k: 1419	n:1180000
KS ci ratio: 5.189952e-03	ci left: 3.250552e-01	ci right 3.267474e-01	k: 384563	n:1180000
DAXX   1180000 perm   845 sec   (1397 perm/sec)   p_kst 3.259008e-01   p_cons 1.202542e-03   p_joint 3.689831e-03

Joint ci ratio: 5.903400e-02	ci left: 3.582595e-03	ci right 3.801344e-03	k: 4392	n:1190000
Cons ci ratio: 1.035268e-01	ci left: 1.141051e-03	ci right 1.266439e-03	k: 1431	n:1190000
KS ci ratio: 5.168060e-03	ci left: 3.250621e-01	ci right 3.267472e-01	k: 387826	n:1190000
DAXX   1190000 perm   857 sec   (1388 perm/sec)   p_kst 3.259042e-01   p_cons 1.202521e-03   p_joint 3.690756e-03

Joint ci ratio: 5.622061e-02	ci left: 3.921537e-03	ci right 4.149200e-03	k: 4841	n:1200000
Cons ci ratio: 1.031673e-01	ci left: 1.139660e-03	ci right 1.264434e-03	k: 1441	n:1200000
KS ci ratio: 5.146102e-03	ci left: 3.250980e-01	ci right 3.267761e-01	k: 391124	n:1200000
DAXX   1200000 perm   870 sec   (1380 perm/sec)   p_kst 3.259367e-01   p_cons 1.200833e-03   p_joint 4.034167e-03

Joint ci ratio: 5.598982e-02	ci left: 3.921722e-03	ci right 4.148431e-03	k: 4881	n:1210000
Cons ci ratio: 1.027761e-01	ci left: 1.139098e-03	ci right 1.263310e-03	k: 1452	n:1210000
KS ci ratio: 5.124256e-03	ci left: 3.251475e-01	ci right 3.268187e-01	k: 394439	n:1210000
DAXX   1210000 perm   882 sec   (1372 perm/sec)   p_kst 3.259826e-01   p_cons 1.200000e-03   p_joint 4.033884e-03

Joint ci ratio: 5.892237e-02	ci left: 3.508223e-03	ci right 3.722013e-03	k: 4409	n:1220000
Cons ci ratio: 1.024945e-01	ci left: 1.136150e-03	ci right 1.259680e-03	k: 1460	n:1220000
KS ci ratio: 5.104172e-03	ci left: 3.250683e-01	ci right 3.267325e-01	k: 397598	n:1220000
DAXX   1220000 perm   895 sec   (1364 perm/sec)   p_kst 3.259000e-01   p_cons 1.196721e-03   p_joint 3.613934e-03

Joint ci ratio: 5.895680e-02	ci left: 3.475694e-03	ci right 3.687629e-03	k: 4404	n:1230000
Cons ci ratio: 1.019031e-01	ci left: 1.140381e-03	ci right 1.263613e-03	k: 1477	n:1230000
KS ci ratio: 5.082685e-03	ci left: 3.251318e-01	ci right 3.267893e-01	k: 400931	n:1230000
DAXX   1230000 perm   907 sec   (1356 perm/sec)   p_kst 3.259602e-01   p_cons 1.200813e-03   p_joint 3.580488e-03

Joint ci ratio: 5.909243e-02	ci left: 3.431771e-03	ci right 3.641526e-03	k: 4384	n:1240000
Cons ci ratio: 1.013898e-01	ci left: 1.142974e-03	ci right 1.265827e-03	k: 1492	n:1240000
KS ci ratio: 5.061969e-03	ci left: 3.251508e-01	ci right 3.268016e-01	k: 404210	n:1240000
DAXX   1240000 perm   920 sec   (1348 perm/sec)   p_kst 3.259758e-01   p_cons 1.203226e-03   p_joint 3.535484e-03

Joint ci ratio: 5.891154e-02	ci left: 3.425598e-03	ci right 3.634313e-03	k: 4411	n:1250000
Cons ci ratio: 1.010184e-01	ci left: 1.142407e-03	ci right 1.264723e-03	k: 1503	n:1250000
KS ci ratio: 5.041330e-03	ci left: 3.251847e-01	ci right 3.268289e-01	k: 407508	n:1250000
DAXX   1250000 perm   933 sec   (1340 perm/sec)   p_kst 3.260064e-01   p_cons 1.202400e-03   p_joint 3.528800e-03

Joint ci ratio: 5.715782e-02	ci left: 3.612726e-03	ci right 3.826073e-03	k: 4685	n:1260000
Cons ci ratio: 1.006178e-01	ci left: 1.142624e-03	ci right 1.264449e-03	k: 1515	n:1260000
KS ci ratio: 5.021430e-03	ci left: 3.251752e-01	ci right 3.268129e-01	k: 410752	n:1260000
DAXX   1260000 perm   945 sec   (1333 perm/sec)   p_kst 3.259937e-01   p_cons 1.202381e-03   p_joint 3.718254e-03

Joint ci ratio: 5.690327e-02	ci left: 3.616879e-03	ci right 3.829489e-03	k: 4727	n:1270000
Cons ci ratio: 1.001236e-01	ci left: 1.145142e-03	ci right 1.266600e-03	k: 1530	n:1270000
KS ci ratio: 5.001818e-03	ci left: 3.251612e-01	ci right 3.267924e-01	k: 413990	n:1270000
DAXX   1270000 perm   958 sec   (1325 perm/sec)   p_kst 3.259764e-01   p_cons 1.204724e-03   p_joint 3.722047e-03

Joint ci ratio: 5.668789e-02	ci left: 3.616348e-03	ci right 3.828095e-03	k: 4763	n:1280000
Cons ci ratio: 9.976586e-02	ci left: 1.144574e-03	ci right 1.265513e-03	k: 1541	n:1280000
KS ci ratio: 4.982036e-03	ci left: 3.251825e-01	ci right 3.268074e-01	k: 417273	n:1280000
DAXX   1280000 perm   971 sec   (1318 perm/sec)   p_kst 3.259945e-01   p_cons 1.203906e-03   p_joint 3.721094e-03

Outputting figure to mutsig2_images.part000000000047/DAXX.3_2308_1280000_0.32599_0.0012039_0.0037211.png
                gene_name: DAXX
               theta_stop: 0.100 
                    nperm: 1280000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.0012 
      ci_cons_bounds_left: 0.0011 
     ci_cons_bounds_right: 0.0013 
                  p_joint: 0.0037 
     ci_joint_bounds_left: 0.0036 
    ci_joint_bounds_right: 0.0038 

Current progress: 51 percent done.
DCAF15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.328272e-02	ci left: 2.684428e-01	ci right 2.860871e-01	k: 2772	n:10000
Cons ci ratio: 3.396687e-02	ci left: 5.613302e-01	ci right 5.808283e-01	k: 5711	n:10000
KS ci ratio: 7.869324e-02	ci left: 1.909179e-01	ci right 2.066579e-01	k: 1987	n:10000
DCAF15   10000 perm   2 sec   (6000 perm/sec)   p_kst 1.987000e-01   p_cons 5.711000e-01   p_joint 2.772000e-01

Outputting figure to mutsig2_images.part000000000047/DCAF15.3_1855_10000_0.1987_0.5711_0.2772.png
                gene_name: DCAF15
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 53 percent done.
DCAF6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.757392e-02	ci left: 5.112540e-01	ci right 5.309337e-01	k: 5211	n:10000
Cons ci ratio: 8.310267e-02	ci left: 1.743827e-01	ci right 1.896031e-01	k: 1819	n:10000
KS ci ratio: 2.013815e-02	ci left: 7.830994e-01	ci right 7.991306e-01	k: 7912	n:10000
DCAF6   10000 perm   2 sec   (5374 perm/sec)   p_kst 7.912000e-01   p_cons 1.819000e-01   p_joint 5.211000e-01

Outputting figure to mutsig2_images.part000000000047/DCAF6.3_2723_10000_0.7912_0.1819_0.5211.png
                gene_name: DCAF6
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 55 percent done.
DCAF8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.141388e-01	ci left: 9.944712e-02	ci right 1.115838e-01	k: 1054	n:10000
Cons ci ratio: 8.119962e-02	ci left: 1.812696e-01	ci right 1.967120e-01	k: 1889	n:10000
KS ci ratio: 9.114155e-02	ci left: 1.489391e-01	ci right 1.632618e-01	k: 1560	n:10000
DCAF8   10000 perm   2 sec   (5831 perm/sec)   p_kst 1.560000e-01   p_cons 1.889000e-01   p_joint 1.054000e-01

Joint ci ratio: 6.769007e-02	ci left: 1.387176e-01	ci right 1.484862e-01	k: 2871	n:20000
Cons ci ratio: 5.652499e-02	ci left: 1.883417e-01	ci right 1.993475e-01	k: 3876	n:20000
KS ci ratio: 6.552052e-02	ci left: 1.468036e-01	ci right 1.567979e-01	k: 3035	n:20000
DCAF8   20000 perm   4 sec   (5155 perm/sec)   p_kst 1.517500e-01   p_cons 1.938000e-01   p_joint 1.435500e-01

Outputting figure to mutsig2_images.part000000000047/DCAF8.3_1842_20000_0.15175_0.1938_0.14355.png
                gene_name: DCAF8
               theta_stop: 0.068 
                    nperm: 20000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 57 percent done.
DCBLD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.335612e-02	ci left: 4.399157e-01	ci right 4.595136e-01	k: 4497	n:10000
Cons ci ratio: 9.042192e-02	ci left: 1.509997e-01	ci right 1.654000e-01	k: 1581	n:10000
KS ci ratio: 2.916180e-02	ci left: 6.342228e-01	ci right 6.530934e-01	k: 6437	n:10000
DCBLD1   10000 perm   2 sec   (6095 perm/sec)   p_kst 6.437000e-01   p_cons 1.581000e-01   p_joint 4.497000e-01

Outputting figure to mutsig2_images.part000000000047/DCBLD1.3_1680_10000_0.6437_0.1581_0.4497.png
                gene_name: DCBLD1
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 59 percent done.
DCDC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
KS ci ratio: 1.437565e-02	ci left: 8.750041e-01	ci right 8.877728e-01	k: 8815	n:10000
DCDC2   10000 perm   2 sec   (6073 perm/sec)   p_kst 8.815000e-01   p_cons 1   p_joint 1

Outputting figure to mutsig2_images.part000000000047/DCDC2.3_1471_10000_0.8815_1_1.png
                gene_name: DCDC2
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 1 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 61 percent done.
DCLK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.330186e-01	ci left: 7.456177e-02	ci right 8.528446e-02	k: 798	n:10000
Cons ci ratio: 4.310919e-01	ci left: 6.437624e-03	ci right 1.005764e-02	k: 81	n:10000
KS ci ratio: 1.476979e-01	ci left: 6.092108e-02	ci right 7.073370e-02	k: 657	n:10000
DCLK3   10000 perm   2 sec   (5853 perm/sec)   p_kst 6.570000e-02   p_cons 8.100000e-03   p_joint 7.980000e-02

Joint ci ratio: 2.269270e-01	ci left: 1.303072e-02	ci right 1.641252e-02	k: 293	n:20000
Cons ci ratio: 3.002544e-01	ci left: 7.182016e-03	ci right 9.763947e-03	k: 168	n:20000
KS ci ratio: 1.047389e-01	ci left: 6.201199e-02	ci right 6.891500e-02	k: 1308	n:20000
DCLK3   20000 perm   4 sec   (5148 perm/sec)   p_kst 6.540000e-02   p_cons 8.400000e-03   p_joint 1.465000e-02

Joint ci ratio: 1.465282e-01	ci left: 2.159043e-02	ci right 2.503607e-02	k: 698	n:30000
Cons ci ratio: 2.458934e-01	ci left: 7.367115e-03	ci right 9.463093e-03	k: 251	n:30000
KS ci ratio: 8.356670e-02	ci left: 6.547070e-02	ci right 7.121324e-02	k: 2049	n:30000
DCLK3   30000 perm   6 sec   (4887 perm/sec)   p_kst 6.830000e-02   p_cons 8.366667e-03   p_joint 2.326667e-02

Joint ci ratio: 1.711140e-01	ci left: 1.184107e-02	ci right 1.408047e-02	k: 517	n:40000
Cons ci ratio: 2.135928e-01	ci left: 7.457918e-03	ci right 9.264548e-03	k: 333	n:40000
KS ci ratio: 7.230491e-02	ci left: 6.596970e-02	ci right 7.094317e-02	k: 2737	n:40000
DCLK3   40000 perm   8 sec   (4715 perm/sec)   p_kst 6.842500e-02   p_cons 8.325000e-03   p_joint 1.292500e-02

Joint ci ratio: 1.134013e-01	ci left: 2.201490e-02	ci right 2.468084e-02	k: 1166	n:50000
Cons ci ratio: 1.913907e-01	ci left: 7.523421e-03	ci right 9.134446e-03	k: 415	n:50000
KS ci ratio: 6.458556e-02	ci left: 6.639948e-02	ci right 7.085076e-02	k: 3430	n:50000
DCLK3   50000 perm   11 sec   (4586 perm/sec)   p_kst 6.860000e-02   p_cons 8.300000e-03   p_joint 2.332000e-02

Joint ci ratio: 1.238711e-01	ci left: 1.539885e-02	ci right 1.744831e-02	k: 984	n:60000
Cons ci ratio: 1.767255e-01	ci left: 7.414259e-03	ci right 8.867254e-03	k: 487	n:60000
KS ci ratio: 5.906781e-02	ci left: 6.635987e-02	ci right 7.041533e-02	k: 4102	n:60000
DCLK3   60000 perm   13 sec   (4475 perm/sec)   p_kst 6.836667e-02   p_cons 8.116667e-03   p_joint 1.640000e-02

Joint ci ratio: 1.363398e-01	ci left: 1.087514e-02	ci right 1.248000e-02	k: 816	n:70000
Cons ci ratio: 1.649851e-01	ci left: 7.339682e-03	ci right 8.673014e-03	k: 559	n:70000
KS ci ratio: 5.429660e-02	ci left: 6.741528e-02	ci right 7.119195e-02	k: 4850	n:70000
DCLK3   70000 perm   16 sec   (4379 perm/sec)   p_kst 6.928571e-02   p_cons 7.985714e-03   p_joint 1.165714e-02

Joint ci ratio: 1.165731e-01	ci left: 1.312441e-02	ci right 1.476111e-02	k: 1114	n:80000
Cons ci ratio: 1.540871e-01	ci left: 7.406355e-03	ci right 8.654719e-03	k: 641	n:80000
KS ci ratio: 5.083421e-02	ci left: 6.742602e-02	ci right 7.095530e-02	k: 5534	n:80000
DCLK3   80000 perm   19 sec   (4284 perm/sec)   p_kst 6.917500e-02   p_cons 8.012500e-03   p_joint 1.392500e-02

Joint ci ratio: 1.155162e-01	ci left: 1.190306e-02	ci right 1.337305e-02	k: 1136	n:90000
Cons ci ratio: 1.456054e-01	ci left: 7.406920e-03	ci right 8.580680e-03	k: 718	n:90000
KS ci ratio: 4.798444e-02	ci left: 6.737446e-02	ci right 7.069783e-02	k: 6212	n:90000
DCLK3   90000 perm   21 sec   (4199 perm/sec)   p_kst 6.902222e-02   p_cons 7.977778e-03   p_joint 1.262222e-02

Joint ci ratio: 9.911823e-02	ci left: 1.463612e-02	ci right 1.617217e-02	k: 1539	n:100000
Cons ci ratio: 1.374319e-01	ci left: 7.515116e-03	ci right 8.633699e-03	k: 806	n:100000
KS ci ratio: 4.582343e-02	ci left: 6.662532e-02	ci right 6.975978e-02	k: 6818	n:100000
DCLK3   100000 perm   24 sec   (4117 perm/sec)   p_kst 6.818000e-02   p_cons 8.060000e-03   p_joint 1.539000e-02

Joint ci ratio: 9.104623e-02	ci left: 1.581763e-02	ci right 1.733529e-02	k: 1822	n:110000
Cons ci ratio: 1.306437e-01	ci left: 7.587554e-03	ci right 8.656806e-03	k: 892	n:110000
KS ci ratio: 4.365005e-02	ci left: 6.681612e-02	ci right 6.980669e-02	k: 7513	n:110000
DCLK3   110000 perm   27 sec   (4042 perm/sec)   p_kst 6.830000e-02   p_cons 8.109091e-03   p_joint 1.656364e-02

Joint ci ratio: 9.296587e-02	ci left: 1.392080e-02	ci right 1.528614e-02	k: 1751	n:120000
Cons ci ratio: 1.248354e-01	ci left: 7.640975e-03	ci right 8.666341e-03	k: 977	n:120000
KS ci ratio: 4.186056e-02	ci left: 6.667270e-02	ci right 6.953155e-02	k: 8171	n:120000
DCLK3   120000 perm   30 sec   (3954 perm/sec)   p_kst 6.809167e-02   p_cons 8.141667e-03   p_joint 1.459167e-02

Joint ci ratio: 9.056152e-02	ci left: 1.356385e-02	ci right 1.485795e-02	k: 1846	n:130000
Cons ci ratio: 1.203107e-01	ci left: 7.612437e-03	ci right 8.594310e-03	k: 1052	n:130000
KS ci ratio: 4.017939e-02	ci left: 6.685069e-02	ci right 6.959938e-02	k: 8868	n:130000
DCLK3   130000 perm   33 sec   (3883 perm/sec)   p_kst 6.821538e-02   p_cons 8.092308e-03   p_joint 1.420000e-02

Joint ci ratio: 7.659646e-02	ci left: 1.766038e-02	ci right 1.907395e-02	k: 2570	n:140000
Cons ci ratio: 1.158314e-01	ci left: 7.644049e-03	ci right 8.590779e-03	k: 1135	n:140000
KS ci ratio: 3.877719e-02	ci left: 6.670792e-02	ci right 6.935286e-02	k: 9523	n:140000
DCLK3   140000 perm   37 sec   (3804 perm/sec)   p_kst 6.802143e-02   p_cons 8.107143e-03   p_joint 1.835714e-02

Joint ci ratio: 7.100670e-02	ci left: 1.920576e-02	ci right 2.062622e-02	k: 2986	n:150000
Cons ci ratio: 1.108591e-01	ci left: 7.808164e-03	ci right 8.730995e-03	k: 1239	n:150000
KS ci ratio: 3.745502e-02	ci left: 6.677730e-02	ci right 6.933276e-02	k: 10207	n:150000
DCLK3   150000 perm   40 sec   (3741 perm/sec)   p_kst 6.804667e-02   p_cons 8.260000e-03   p_joint 1.990667e-02

Joint ci ratio: 7.392847e-02	ci left: 1.662993e-02	ci right 1.791265e-02	k: 2762	n:160000
Cons ci ratio: 1.075715e-01	ci left: 7.788254e-03	ci right 8.679704e-03	k: 1316	n:160000
KS ci ratio: 3.622915e-02	ci left: 6.694470e-02	ci right 6.942097e-02	k: 10908	n:160000
DCLK3   160000 perm   43 sec   (3679 perm/sec)   p_kst 6.817500e-02   p_cons 8.225000e-03   p_joint 1.726250e-02

Joint ci ratio: 7.361538e-02	ci left: 1.580157e-02	ci right 1.701500e-02	k: 2788	n:170000
Cons ci ratio: 1.051702e-01	ci left: 7.679375e-03	ci right 8.537527e-03	k: 1377	n:170000
KS ci ratio: 3.514714e-02	ci left: 6.698276e-02	ci right 6.938493e-02	k: 11590	n:170000
DCLK3   170000 perm   47 sec   (3614 perm/sec)   p_kst 6.817647e-02   p_cons 8.100000e-03   p_joint 1.640000e-02

Joint ci ratio: 7.375701e-02	ci left: 1.487982e-02	ci right 1.602475e-02	k: 2780	n:180000
Cons ci ratio: 1.017183e-01	ci left: 7.766885e-03	ci right 8.604626e-03	k: 1472	n:180000
KS ci ratio: 3.425407e-02	ci left: 6.665932e-02	ci right 6.898795e-02	k: 12207	n:180000
DCLK3   180000 perm   51 sec   (3556 perm/sec)   p_kst 6.781667e-02   p_cons 8.177778e-03   p_joint 1.544444e-02

Joint ci ratio: 5.319223e-02	ci left: 2.704978e-02	ci right 2.853310e-02	k: 5279	n:190000
Cons ci ratio: 9.922544e-02	ci left: 7.742915e-03	ci right 8.556410e-03	k: 1547	n:190000
KS ci ratio: 3.343971e-02	ci left: 6.631843e-02	ci right 6.857900e-02	k: 12814	n:190000
DCLK3   190000 perm   54 sec   (3497 perm/sec)   p_kst 6.744211e-02   p_cons 8.142105e-03   p_joint 2.778421e-02

Outputting figure to mutsig2_images.part000000000047/DCLK3.3_1963_190000_0.067442_0.0081421_0.027784.png
                gene_name: DCLK3
               theta_stop: 0.099 
                    nperm: 190000 
                     p_ks: 0.067 
        ci_ks_bounds_left: 0.066 
       ci_ks_bounds_right: 0.069 
                   p_cons: 0.0081 
      ci_cons_bounds_left: 0.0077 
     ci_cons_bounds_right: 0.0086 
                  p_joint: 0.028 
     ci_joint_bounds_left: 0.027 
    ci_joint_bounds_right: 0.029 

Current progress: 63 percent done.
DAG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.918818e-03	ci left: 9.880698e-01	ci right 9.920369e-01	k: 9902	n:10000
Cons ci ratio: 4.240530e-02	ci left: 4.508931e-01	ci right 4.705298e-01	k: 4607	n:10000
KS ci ratio: 6.602499e-03	ci left: 9.691039e-01	ci right 9.756170e-01	k: 9725	n:10000
DAG1   10000 perm   2 sec   (5957 perm/sec)   p_kst 9.725000e-01   p_cons 4.607000e-01   p_joint 9.902000e-01

Outputting figure to mutsig2_images.part000000000047/DAG1.2_2696_10000_0.9725_0.4607_0.9902.png
                gene_name: DAG1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 65 percent done.
DAGLB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.799618e-03	ci left: 9.580656e-01	ci right 9.656623e-01	k: 9620	n:10000
KS ci ratio: 4.952396e-02	ci left: 3.755471e-01	ci right 3.947199e-01	k: 3851	n:10000
DAGLB   10000 perm   2 sec   (6078 perm/sec)   p_kst 3.851000e-01   p_cons 9.620000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000047/DAGLB.2_2079_10000_0.3851_0.962_1.png
                gene_name: DAGLB
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
DALRD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.688723e-02	ci left: 1.983069e-01	ci right 2.142646e-01	k: 2062	n:10000
Cons ci ratio: 8.130572e-02	ci left: 1.808759e-01	ci right 1.963059e-01	k: 1885	n:10000
KS ci ratio: 5.715629e-02	ci left: 3.106623e-01	ci right 3.290427e-01	k: 3198	n:10000
DALRD3   10000 perm   2 sec   (6629 perm/sec)   p_kst 3.198000e-01   p_cons 1.885000e-01   p_joint 2.062000e-01

Outputting figure to mutsig2_images.part000000000047/DALRD3.2_1680_10000_0.3198_0.1885_0.2062.png
                gene_name: DALRD3
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 69 percent done.
DAND5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.655248e-02	ci left: 1.346260e-01	ci right 1.483836e-01	k: 1414	n:10000
Cons ci ratio: 6.216491e-02	ci left: 2.755719e-01	ci right 2.933539e-01	k: 2844	n:10000
KS ci ratio: 2.505034e-01	ci left: 2.090184e-02	ci right 2.697984e-02	k: 238	n:10000
DAND5   10000 perm   1 sec   (7534 perm/sec)   p_kst 2.380000e-02   p_cons 2.844000e-01   p_joint 1.414000e-01

Joint ci ratio: 8.122727e-02	ci left: 1.000476e-01	ci right 1.085678e-01	k: 2085	n:20000
Cons ci ratio: 4.375855e-02	ci left: 2.800417e-01	ci right 2.926205e-01	k: 5726	n:20000
KS ci ratio: 1.810558e-01	ci left: 2.082370e-02	ci right 2.501659e-02	k: 457	n:20000
DAND5   20000 perm   3 sec   (6476 perm/sec)   p_kst 2.285000e-02   p_cons 2.863000e-01   p_joint 1.042500e-01

Joint ci ratio: 6.700563e-02	ci left: 9.895844e-02	ci right 1.058521e-01	k: 3071	n:30000
Cons ci ratio: 3.606830e-02	ci left: 2.773769e-01	ci right 2.875986e-01	k: 8474	n:30000
KS ci ratio: 1.488334e-01	ci left: 2.091575e-02	ci right 2.431090e-02	k: 677	n:30000
DAND5   30000 perm   5 sec   (6107 perm/sec)   p_kst 2.256667e-02   p_cons 2.824667e-01   p_joint 1.023667e-01

Joint ci ratio: 8.752659e-02	ci left: 4.565623e-02	ci right 4.985973e-02	k: 1909	n:40000
Cons ci ratio: 3.144738e-02	ci left: 2.753547e-01	ci right 2.841773e-01	k: 11190	n:40000
KS ci ratio: 1.315229e-01	ci left: 2.029445e-02	ci right 2.317557e-02	k: 868	n:40000
DAND5   40000 perm   7 sec   (5811 perm/sec)   p_kst 2.170000e-02   p_cons 2.797500e-01   p_joint 4.772500e-02

Joint ci ratio: 7.796963e-02	ci left: 4.624072e-02	ci right 5.001197e-02	k: 2405	n:50000
Cons ci ratio: 3.015501e-02	ci left: 2.487760e-01	ci right 2.564127e-01	k: 12629	n:50000
KS ci ratio: 1.174860e-01	ci left: 2.049898e-02	ci right 2.307695e-02	k: 1088	n:50000
DAND5   50000 perm   9 sec   (5624 perm/sec)   p_kst 2.176000e-02   p_cons 2.525800e-01   p_joint 4.810000e-02

Joint ci ratio: 7.045129e-02	ci left: 4.733540e-02	ci right 5.080838e-02	k: 2943	n:60000
Cons ci ratio: 2.575818e-02	ci left: 2.748991e-01	ci right 2.820890e-01	k: 16709	n:60000
KS ci ratio: 1.062076e-01	ci left: 2.101969e-02	ci right 2.339350e-02	k: 1331	n:60000
DAND5   60000 perm   11 sec   (5460 perm/sec)   p_kst 2.218333e-02   p_cons 2.784833e-01   p_joint 4.905000e-02

Joint ci ratio: 6.462082e-02	ci left: 4.832667e-02	ci right 5.156790e-02	k: 3495	n:70000
Cons ci ratio: 2.385847e-02	ci left: 2.749821e-01	ci right 2.816363e-01	k: 19481	n:70000
KS ci ratio: 9.948102e-02	ci left: 2.061942e-02	ci right 2.279190e-02	k: 1518	n:70000
DAND5   70000 perm   13 sec   (5307 perm/sec)   p_kst 2.168571e-02   p_cons 2.783000e-01   p_joint 4.992857e-02

Outputting figure to mutsig2_images.part000000000047/DAND5.2_578_70000_0.021686_0.2783_0.049929.png
                gene_name: DAND5
               theta_stop: 0.099 
                    nperm: 70000 
                     p_ks: 0.022 
        ci_ks_bounds_left: 0.021 
       ci_ks_bounds_right: 0.023 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.050 
     ci_joint_bounds_left: 0.048 
    ci_joint_bounds_right: 0.052 

Current progress: 71 percent done.
DAO
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.931867e-02	ci left: 7.966903e-01	ci right 8.123319e-01	k: 8046	n:10000
Cons ci ratio: 5.867464e-02	ci left: 2.994543e-01	ci right 3.176574e-01	k: 3085	n:10000
KS ci ratio: 2.856686e-02	ci left: 6.436774e-01	ci right 6.624334e-01	k: 6531	n:10000
DAO   10000 perm   1 sec   (6742 perm/sec)   p_kst 6.531000e-01   p_cons 3.085000e-01   p_joint 8.046000e-01

Outputting figure to mutsig2_images.part000000000047/DAO.2_1084_10000_0.6531_0.3085_0.8046.png
                gene_name: DAO
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 73 percent done.
DAP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.992248e-02	ci left: 6.222595e-01	ci right 6.412637e-01	k: 6318	n:10000
KS ci ratio: 2.402670e-02	ci left: 7.180521e-01	ci right 7.356156e-01	k: 7269	n:10000
DAP3   10000 perm   2 sec   (6642 perm/sec)   p_kst 7.269000e-01   p_cons 6.318000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000047/DAP3.2_1245_10000_0.7269_0.6318_1.png
                gene_name: DAP3
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
DAPK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.004086e-02	ci left: 9.336122e-01	ci right 9.431305e-01	k: 9385	n:10000
Cons ci ratio: 1.934937e-02	ci left: 7.961830e-01	ci right 8.118395e-01	k: 8041	n:10000
KS ci ratio: 4.835253e-02	ci left: 3.868937e-01	ci right 4.061666e-01	k: 3965	n:10000
DAPK1   10000 perm   2 sec   (5045 perm/sec)   p_kst 3.965000e-01   p_cons 8.041000e-01   p_joint 9.385000e-01

Outputting figure to mutsig2_images.part000000000047/DAPK1.2_4393_10000_0.3965_0.8041_0.9385.png
                gene_name: DAPK1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 78 percent done.
DAZAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.348616e-01	ci left: 7.262363e-02	ci right 8.322381e-02	k: 778	n:10000
Cons ci ratio: 6.174011e-02	ci left: 2.783450e-01	ci right 2.961790e-01	k: 2872	n:10000
KS ci ratio: 1.849218e-01	ci left: 3.901215e-02	ci right 4.705680e-02	k: 429	n:10000
DAZAP1   10000 perm   1 sec   (6891 perm/sec)   p_kst 4.290000e-02   p_cons 2.872000e-01   p_joint 7.780000e-02

Joint ci ratio: 3.784481e-02	ci left: 3.424909e-01	ci right 3.557530e-01	k: 6982	n:20000
Cons ci ratio: 4.426718e-02	ci left: 2.753736e-01	ci right 2.878899e-01	k: 5632	n:20000
KS ci ratio: 1.288181e-01	ci left: 4.139287e-02	ci right 4.714057e-02	k: 884	n:20000
DAZAP1   20000 perm   3 sec   (5975 perm/sec)   p_kst 4.420000e-02   p_cons 2.816000e-01   p_joint 3.491000e-01

Joint ci ratio: 1.010469e-02	ci left: 8.295386e-01	ci right 8.379966e-01	k: 25014	n:30000
Cons ci ratio: 3.603866e-02	ci left: 2.777083e-01	ci right 2.879337e-01	k: 8484	n:30000
KS ci ratio: 1.036178e-01	ci left: 4.316924e-02	ci right 4.791927e-02	k: 1365	n:30000
DAZAP1   30000 perm   5 sec   (5632 perm/sec)   p_kst 4.550000e-02   p_cons 2.828000e-01   p_joint 8.338000e-01

Joint ci ratio: 4.804043e-02	ci left: 1.392611e-01	ci right 1.461408e-01	k: 5707	n:40000
Cons ci ratio: 3.126887e-02	ci left: 2.776436e-01	ci right 2.864881e-01	k: 11282	n:40000
KS ci ratio: 9.010813e-02	ci left: 4.313582e-02	ci right 4.723054e-02	k: 1806	n:40000
DAZAP1   40000 perm   7 sec   (5383 perm/sec)   p_kst 4.515000e-02   p_cons 2.820500e-01   p_joint 1.426750e-01

Outputting figure to mutsig2_images.part000000000047/DAZAP1.2_1365_40000_0.04515_0.28205_0.14267.png
                gene_name: DAZAP1
               theta_stop: 0.090 
                    nperm: 40000 
                     p_ks: 0.045 
        ci_ks_bounds_left: 0.043 
       ci_ks_bounds_right: 0.047 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 80 percent done.
DBI
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.492253e-02	ci left: 4.224616e-01	ci right 4.419779e-01	k: 4322	n:10000
Cons ci ratio: 1.753367e-01	ci left: 4.341336e-02	ci right 5.185268e-02	k: 475	n:10000
KS ci ratio: 3.147915e-02	ci left: 5.982508e-01	ci right 6.174863e-01	k: 6079	n:10000
DBI   10000 perm   1 sec   (7053 perm/sec)   p_kst 6.079000e-01   p_cons 4.750000e-02   p_joint 4.322000e-01

Joint ci ratio: 3.255018e-02	ci left: 4.134461e-01	ci right 4.271771e-01	k: 8406	n:20000
Cons ci ratio: 1.233061e-01	ci left: 4.512682e-02	ci right 5.110543e-02	k: 961	n:20000
KS ci ratio: 2.244046e-02	ci left: 5.972325e-01	ci right 6.108373e-01	k: 12081	n:20000
DBI   20000 perm   3 sec   (6149 perm/sec)   p_kst 6.040500e-01   p_cons 4.805000e-02   p_joint 4.203000e-01

Joint ci ratio: 2.138159e-02	ci left: 5.226987e-01	ci right 5.340292e-01	k: 15851	n:30000
Cons ci ratio: 1.003514e-01	ci left: 4.596613e-02	ci right 5.085513e-02	k: 1451	n:30000
KS ci ratio: 1.836440e-02	ci left: 5.974036e-01	ci right 6.085098e-01	k: 18089	n:30000
DBI   30000 perm   5 sec   (5794 perm/sec)   p_kst 6.029667e-01   p_cons 4.836667e-02   p_joint 5.283667e-01

Joint ci ratio: 2.277244e-02	ci left: 4.206728e-01	ci right 4.303880e-01	k: 17021	n:40000
Cons ci ratio: 8.590928e-02	ci left: 4.734561e-02	ci right 5.162009e-02	k: 1978	n:40000
KS ci ratio: 1.586325e-02	ci left: 5.993878e-01	ci right 6.089971e-01	k: 24168	n:40000
DBI   40000 perm   7 sec   (5567 perm/sec)   p_kst 6.042000e-01   p_cons 4.945000e-02   p_joint 4.255250e-01

Outputting figure to mutsig2_images.part000000000047/DBI.2_586_40000_0.6042_0.04945_0.42552.png
                gene_name: DBI
               theta_stop: 0.086 
                    nperm: 40000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.049 
      ci_cons_bounds_left: 0.047 
     ci_cons_bounds_right: 0.052 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.43 

Current progress: 82 percent done.
DBN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.035677e-01	ci left: 2.943789e-03	ci right 5.558045e-03	k: 41	n:10000
Cons ci ratio: 1.315918e-01	ci left: 7.611299e-02	ci right 8.693227e-02	k: 814	n:10000
KS ci ratio: 3.769094e-01	ci left: 8.686342e-03	ci right 1.280614e-02	k: 106	n:10000
DBN1   10000 perm   2 sec   (6339 perm/sec)   p_kst 1.060000e-02   p_cons 8.140000e-02   p_joint 4.100000e-03

Joint ci ratio: 3.289497e-01	ci left: 5.891661e-03	ci right 8.255063e-03	k: 140	n:20000
Cons ci ratio: 9.210118e-02	ci left: 7.921235e-02	ci right 8.690937e-02	k: 1660	n:20000
KS ci ratio: 2.553012e-01	ci left: 1.016235e-02	ci right 1.318213e-02	k: 232	n:20000
DBN1   20000 perm   4 sec   (5533 perm/sec)   p_kst 1.160000e-02   p_cons 8.300000e-02   p_joint 7.000000e-03

Joint ci ratio: 2.645252e-01	ci left: 6.305714e-03	ci right 8.258200e-03	k: 217	n:30000
Cons ci ratio: 7.582484e-02	ci left: 7.868996e-02	ci right 8.492464e-02	k: 2453	n:30000
KS ci ratio: 2.025272e-01	ci left: 1.108349e-02	ci right 1.361227e-02	k: 369	n:30000
DBN1   30000 perm   6 sec   (5238 perm/sec)   p_kst 1.230000e-02   p_cons 8.176667e-02   p_joint 7.233333e-03

Joint ci ratio: 2.269980e-01	ci left: 6.559940e-03	ci right 8.262746e-03	k: 295	n:40000
Cons ci ratio: 6.568833e-02	ci left: 7.905832e-02	ci right 8.445258e-02	k: 3269	n:40000
KS ci ratio: 1.749164e-01	ci left: 1.131462e-02	ci right 1.350702e-02	k: 495	n:40000
DBN1   40000 perm   8 sec   (5051 perm/sec)   p_kst 1.237500e-02   p_cons 8.172500e-02   p_joint 7.375000e-03

Joint ci ratio: 1.572225e-01	ci left: 1.131384e-02	ci right 1.326340e-02	k: 613	n:50000
Cons ci ratio: 5.546663e-02	ci left: 8.829534e-02	ci right 9.335228e-02	k: 4540	n:50000
KS ci ratio: 1.572225e-01	ci left: 1.131384e-02	ci right 1.326340e-02	k: 613	n:50000
DBN1   50000 perm   10 sec   (4893 perm/sec)   p_kst 1.226000e-02   p_cons 9.080000e-02   p_joint 1.226000e-02

Joint ci ratio: 1.420479e-01	ci left: 1.164240e-02	ci right 1.343855e-02	k: 751	n:60000
Cons ci ratio: 5.052286e-02	ci left: 8.887494e-02	ci right 9.349802e-02	k: 5470	n:60000
KS ci ratio: 1.420479e-01	ci left: 1.164240e-02	ci right 1.343855e-02	k: 751	n:60000
DBN1   60000 perm   13 sec   (4759 perm/sec)   p_kst 1.251667e-02   p_cons 9.116667e-02   p_joint 1.251667e-02

Joint ci ratio: 1.310829e-01	ci left: 1.178682e-02	ci right 1.345394e-02	k: 882	n:70000
Cons ci ratio: 4.689582e-02	ci left: 8.862482e-02	ci right 9.289489e-02	k: 6352	n:70000
KS ci ratio: 1.310829e-01	ci left: 1.178682e-02	ci right 1.345394e-02	k: 882	n:70000
DBN1   70000 perm   15 sec   (4642 perm/sec)   p_kst 1.260000e-02   p_cons 9.074286e-02   p_joint 1.260000e-02

Joint ci ratio: 1.223803e-01	ci left: 1.188703e-02	ci right 1.344861e-02	k: 1012	n:80000
Cons ci ratio: 4.386563e-02	ci left: 8.876809e-02	ci right 9.276165e-02	k: 7260	n:80000
KS ci ratio: 1.223803e-01	ci left: 1.188703e-02	ci right 1.344861e-02	k: 1012	n:80000
DBN1   80000 perm   18 sec   (4534 perm/sec)   p_kst 1.265000e-02   p_cons 9.075000e-02   p_joint 1.265000e-02

Joint ci ratio: 1.154134e-01	ci left: 1.192464e-02	ci right 1.339590e-02	k: 1138	n:90000
Cons ci ratio: 4.137818e-02	ci left: 8.879841e-02	ci right 9.256135e-02	k: 8160	n:90000
KS ci ratio: 1.154134e-01	ci left: 1.192464e-02	ci right 1.339590e-02	k: 1138	n:90000
DBN1   90000 perm   20 sec   (4436 perm/sec)   p_kst 1.264444e-02   p_cons 9.066667e-02   p_joint 1.264444e-02

Joint ci ratio: 1.100006e-01	ci left: 1.184974e-02	ci right 1.323874e-02	k: 1253	n:100000
Cons ci ratio: 3.930434e-02	ci left: 8.868908e-02	ci right 9.225472e-02	k: 9046	n:100000
KS ci ratio: 1.100006e-01	ci left: 1.184974e-02	ci right 1.323874e-02	k: 1253	n:100000
DBN1   100000 perm   23 sec   (4340 perm/sec)   p_kst 1.253000e-02   p_cons 9.046000e-02   p_joint 1.253000e-02

Joint ci ratio: 1.045901e-01	ci left: 1.194918e-02	ci right 1.327670e-02	k: 1386	n:110000
Cons ci ratio: 3.752230e-02	ci left: 8.856747e-02	ci right 9.196326e-02	k: 9928	n:110000
KS ci ratio: 1.045901e-01	ci left: 1.194918e-02	ci right 1.327670e-02	k: 1386	n:110000
DBN1   110000 perm   26 sec   (4252 perm/sec)   p_kst 1.260000e-02   p_cons 9.025455e-02   p_joint 1.260000e-02

Joint ci ratio: 1.002076e-01	ci left: 1.196029e-02	ci right 1.323009e-02	k: 1510	n:120000
Cons ci ratio: 3.596255e-02	ci left: 8.846921e-02	ci right 9.171729e-02	k: 10810	n:120000
KS ci ratio: 1.002076e-01	ci left: 1.196029e-02	ci right 1.323009e-02	k: 1510	n:120000
DBN1   120000 perm   29 sec   (4171 perm/sec)   p_kst 1.258333e-02   p_cons 9.008333e-02   p_joint 1.258333e-02

Joint ci ratio: 9.663319e-02	ci left: 1.189559e-02	ci right 1.311092e-02	k: 1624	n:130000
Cons ci ratio: 3.453052e-02	ci left: 8.863281e-02	ci right 9.175473e-02	k: 11724	n:130000
KS ci ratio: 9.663319e-02	ci left: 1.189559e-02	ci right 1.311092e-02	k: 1624	n:130000
DBN1   130000 perm   32 sec   (4094 perm/sec)   p_kst 1.249231e-02   p_cons 9.018462e-02   p_joint 1.249231e-02

Outputting figure to mutsig2_images.part000000000047/DBN1.2_2102_130000_0.012492_0.090185_0.012492.png
                gene_name: DBN1
               theta_stop: 0.097 
                    nperm: 130000 
                     p_ks: 0.012 
        ci_ks_bounds_left: 0.012 
       ci_ks_bounds_right: 0.013 
                   p_cons: 0.090 
      ci_cons_bounds_left: 0.089 
     ci_cons_bounds_right: 0.092 
                  p_joint: 0.012 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.013 

Current progress: 84 percent done.
DBR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.717692e-02	ci left: 5.165574e-01	ci right 5.362273e-01	k: 5264	n:10000
Cons ci ratio: 3.713222e-02	ci left: 5.171578e-01	ci right 5.368265e-01	k: 5270	n:10000
KS ci ratio: 4.467632e-02	ci left: 4.251537e-01	ci right 4.446842e-01	k: 4349	n:10000
DBR1   10000 perm   2 sec   (6271 perm/sec)   p_kst 4.349000e-01   p_cons 5.270000e-01   p_joint 5.264000e-01

Outputting figure to mutsig2_images.part000000000047/DBR1.2_1667_10000_0.4349_0.527_0.5264.png
                gene_name: DBR1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 86 percent done.
DCAF17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.729154e-02	ci left: 6.642096e-01	ci right 6.826893e-01	k: 6735	n:10000
Cons ci ratio: 2.721716e-03	ci left: 9.937548e-01	ci right 9.965446e-01	k: 9953	n:10000
KS ci ratio: 7.719376e-02	ci left: 1.970258e-01	ci right 2.129464e-01	k: 2049	n:10000
DCAF17   10000 perm   2 sec   (6657 perm/sec)   p_kst 2.049000e-01   p_cons 9.953000e-01   p_joint 6.735000e-01

Outputting figure to mutsig2_images.part000000000047/DCAF17.2_1619_10000_0.2049_0.9953_0.6735.png
                gene_name: DCAF17
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 1.00 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 88 percent done.
DCAF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.268002e-02	ci left: 7.405823e-01	ci right 7.576724e-01	k: 7492	n:10000
Cons ci ratio: 1.224168e-02	ci left: 9.054543e-01	ci right 9.167049e-01	k: 9112	n:10000
KS ci ratio: 3.673202e-02	ci left: 5.225625e-01	ci right 5.422186e-01	k: 5324	n:10000
DCAF4   10000 perm   2 sec   (6412 perm/sec)   p_kst 5.324000e-01   p_cons 9.112000e-01   p_joint 7.492000e-01

Outputting figure to mutsig2_images.part000000000047/DCAF4.2_1543_10000_0.5324_0.9112_0.7492.png
                gene_name: DCAF4
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 90 percent done.
DCAF4L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.093336e-02	ci left: 4.684669e-01	ci right 4.881457e-01	k: 4783	n:10000
Cons ci ratio: 3.914713e-02	ci left: 4.907512e-01	ci right 5.104484e-01	k: 5006	n:10000
KS ci ratio: 1.010923e-01	ci left: 1.240539e-01	ci right 1.373620e-01	k: 1306	n:10000
DCAF4L1   10000 perm   2 sec   (6550 perm/sec)   p_kst 1.306000e-01   p_cons 5.006000e-01   p_joint 4.783000e-01

Joint ci ratio: 3.673473e-02	ci left: 3.560820e-01	ci right 3.694579e-01	k: 7255	n:20000
Cons ci ratio: 2.959233e-02	ci left: 4.603655e-01	ci right 4.742440e-01	k: 9346	n:20000
KS ci ratio: 7.096984e-02	ci left: 1.276330e-01	ci right 1.370741e-01	k: 2646	n:20000
DCAF4L1   20000 perm   4 sec   (5664 perm/sec)   p_kst 1.323000e-01   p_cons 4.673000e-01   p_joint 3.627500e-01

Outputting figure to mutsig2_images.part000000000047/DCAF4L1.2_1195_20000_0.1323_0.4673_0.36275.png
                gene_name: DCAF4L1
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 92 percent done.
DCDC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.076409e-02	ci left: 6.091973e-01	ci right 6.283334e-01	k: 6188	n:10000
Cons ci ratio: 3.882749e-02	ci left: 4.948504e-01	ci right 5.145468e-01	k: 5047	n:10000
KS ci ratio: 5.697292e-02	ci left: 3.120513e-01	ci right 3.304529e-01	k: 3212	n:10000
DCDC1   10000 perm   2 sec   (6603 perm/sec)   p_kst 3.212000e-01   p_cons 5.047000e-01   p_joint 6.188000e-01

Outputting figure to mutsig2_images.part000000000047/DCDC1.2_1093_10000_0.3212_0.5047_0.6188.png
                gene_name: DCDC1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 94 percent done.
DCLK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.378697e-02	ci left: 5.639369e-01	ci right 5.834201e-01	k: 5737	n:10000
Cons ci ratio: 2.325932e-02	ci left: 7.308797e-01	ci right 7.481806e-01	k: 7396	n:10000
KS ci ratio: 8.235680e-02	ci left: 1.770385e-01	ci right 1.923456e-01	k: 1846	n:10000
DCLK2   10000 perm   2 sec   (5887 perm/sec)   p_kst 1.846000e-01   p_cons 7.396000e-01   p_joint 5.737000e-01

Outputting figure to mutsig2_images.part000000000047/DCLK2.2_2365_10000_0.1846_0.7396_0.5737.png
                gene_name: DCLK2
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 96 percent done.
DCLRE1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.062615e-02	ci left: 1.504109e-01	ci right 1.647892e-01	k: 1575	n:10000
Cons ci ratio: 3.785336e-02	ci left: 5.075522e-01	ci right 5.272376e-01	k: 5174	n:10000
KS ci ratio: 1.523350e-01	ci left: 5.735153e-02	ci right 6.690551e-02	k: 620	n:10000
DCLRE1B   10000 perm   2 sec   (6373 perm/sec)   p_kst 6.200000e-02   p_cons 5.174000e-01   p_joint 1.575000e-01

Joint ci ratio: 9.797943e-02	ci left: 7.045809e-02	ci right 7.776631e-02	k: 1481	n:20000
Cons ci ratio: 2.675488e-02	ci left: 5.106977e-01	ci right 5.245972e-01	k: 10353	n:20000
KS ci ratio: 1.099059e-01	ci left: 5.650427e-02	ci right 6.312442e-02	k: 1195	n:20000
DCLRE1B   20000 perm   4 sec   (5574 perm/sec)   p_kst 5.975000e-02   p_cons 5.176500e-01   p_joint 7.405000e-02

Joint ci ratio: 9.303778e-02	ci left: 5.326166e-02	ci right 5.849143e-02	k: 1675	n:30000
Cons ci ratio: 2.194588e-02	ci left: 5.096935e-01	ci right 5.210369e-01	k: 15461	n:30000
KS ci ratio: 8.939448e-02	ci left: 5.753446e-02	ci right 6.295109e-02	k: 1806	n:30000
DCLRE1B   30000 perm   6 sec   (5274 perm/sec)   p_kst 6.020000e-02   p_cons 5.153667e-01   p_joint 5.583333e-02

Outputting figure to mutsig2_images.part000000000047/DCLRE1B.2_1615_30000_0.0602_0.51537_0.055833.png
                gene_name: DCLRE1B
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.060 
        ci_ks_bounds_left: 0.058 
       ci_ks_bounds_right: 0.063 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.056 
     ci_joint_bounds_left: 0.053 
    ci_joint_bounds_right: 0.058 

Current progress: 98 percent done.
DCLRE1C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.546038e-01	ci left: 5.571306e-02	ci right 6.514503e-02	k: 603	n:10000
Cons ci ratio: 1.647107e-01	ci left: 4.917009e-02	ci right 5.809220e-02	k: 535	n:10000
KS ci ratio: 3.590659e-02	ci left: 5.338761e-01	ci right 5.534984e-01	k: 5437	n:10000
DCLRE1C   10000 perm   2 sec   (5973 perm/sec)   p_kst 5.437000e-01   p_cons 5.350000e-02   p_joint 6.030000e-02

Joint ci ratio: 7.268865e-02	ci left: 1.223163e-01	ci right 1.315924e-01	k: 2538	n:20000
Cons ci ratio: 1.156747e-01	ci left: 5.115076e-02	ci right 5.747960e-02	k: 1085	n:20000
KS ci ratio: 2.544012e-02	ci left: 5.358151e-01	ci right 5.496725e-01	k: 10855	n:20000
DCLRE1C   20000 perm   4 sec   (5273 perm/sec)   p_kst 5.427500e-01   p_cons 5.425000e-02   p_joint 1.269000e-01

Joint ci ratio: 6.889504e-02	ci left: 9.403444e-02	ci right 1.007771e-01	k: 2921	n:30000
Cons ci ratio: 8.574176e-02	ci left: 6.233390e-02	ci right 6.795067e-02	k: 1953	n:30000
KS ci ratio: 2.081901e-02	ci left: 5.359746e-01	ci right 5.472840e-01	k: 16249	n:30000
DCLRE1C   30000 perm   6 sec   (5009 perm/sec)   p_kst 5.416333e-01   p_cons 6.510000e-02   p_joint 9.736667e-02

Outputting figure to mutsig2_images.part000000000047/DCLRE1C.2_2135_30000_0.54163_0.0651_0.097367.png
                gene_name: DCLRE1C
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.065 
      ci_cons_bounds_left: 0.062 
     ci_cons_bounds_right: 0.068 
                  p_joint: 0.097 
     ci_joint_bounds_left: 0.094 
    ci_joint_bounds_right: 0.10 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000047
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 47 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1701>
Subject: Job 8004005: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1701>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000048> was used as the working directory.
Started at Sun Nov 11 15:05:09 2012
Results reported at Sun Nov 11 15:44:26 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000048.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000048.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 48  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000048.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   2424.31 sec.
    Max Memory :      5118 MB
    Max Swap   :      7587 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
48
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 48
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 48: processing genes 4253 - 4343
Calculating significance of each gene.
Using projection method.
4253	DCPS	4.033969e-01
4254	DCST1	7.000804e-01
4255	DCST2	6.265258e-01
4256	DCT	1.996819e-01
4257	DCTD	5.082563e-01
4258	DCTN1	8.874748e-01
4259	DCTN2	1
4260	DCTN3	1
4261	DCTN4	1
4262	DCTN5	5.089442e-01
4263	DCTN6	1
4264	DCTPP1	1
4265	DCUN1D1	4.284541e-03
4266	DCUN1D2	6.607434e-01
4267	DCUN1D3	1
4268	DCUN1D4	1
4269	DCUN1D5	1
4270	DCX	1.329604e-02
4271	DCXR	1
4272	DDA1	5.182919e-02
4273	DDAH1	1
4274	DDAH2	1
4275	DDB1	1
4276	DDB2	2.208339e-01
4277	DDC	5.570787e-01
4278	DDHD1	3.133568e-01
4279	DDHD2	4.222860e-01
4280	DDI1	2.815586e-01
4281	DDI2	3.409639e-01
4282	DDIT3	1
4283	DDIT4	1.615548e-01
4284	DDIT4L	2.161544e-01
4285	DDN	1
4286	DDO	3.231939e-01
4287	DDOST	6.364312e-01
4288	DDR1	6.074713e-01
4289	DDR2	1
4290	DDRGK1	1
4291	DDTL	1
4292	DDX1	7.207150e-01
4293	DDX10	8.832623e-01
4294	DDX11	4.613296e-01
4295	DDX17	8.191117e-01
4296	DDX18	6.142475e-01
4297	DDX19A	8.657374e-01
4298	DDX19B	1
4299	DDX20	1
4300	DDX21	1
4301	DDX23	7.495029e-01
4302	DDX24	1
4303	DDX25	1
4304	DDX26B	9.205916e-01
4305	DDX27	3.013789e-01
4306	DDX28	7.884101e-01
4307	DDX31	8.939032e-01
4308	DDX39	6.560383e-01
4309	DDX3X	5.323458e-01
4310	DDX3Y	8.100274e-01
4311	DDX4	7.623810e-01
4312	DDX41	6.269818e-01
4313	DDX42	5.811780e-01
4314	DDX43	8.704606e-01
4315	DDX46	5.895627e-01
4316	DDX47	1
4317	DDX49	1
4318	DDX5	8.531455e-01
4319	DDX50	8.993020e-01
4320	DDX51	8.988941e-01
4321	DDX52	9.266392e-01
4322	DDX53	1
4323	DDX54	6.494496e-01
4324	DDX55	9.297662e-01
4325	DDX56	1
4326	DDX58	8.026582e-01
4327	DDX59	2.412157e-01
4328	DDX6	7.906817e-01
4329	DDX60	1
4330	DDX60L	8.924332e-01
4331	DEAF1	1.219454e-01
4332	DEC1	1
4333	DECR1	7.060173e-01
4334	DECR2	6.682084e-02
4335	DEDD	1
4336	DEDD2	1
4337	DEF6	3.562598e-01
4338	DEF8	1
4339	DEFA1	1
4340	DEFA1B	1
4341	DEFA3	1
4342	DEFA4	3.133073e-02
4343	DEFA5	3.895551e-02
Done

Running MutSig 2:
Scatter job 48: processing genes 4253 - 4343
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
DDX11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.773010e-01	ci left: 4.245560e-02	ci right 5.081107e-02	k: 465	n:10000
Cons ci ratio: 1.138285e-02	ci left: 9.168793e-01	ci right 9.274733e-01	k: 9223	n:10000
KS ci ratio: 3.920006e-01	ci left: 7.963073e-03	ci right 1.193024e-02	k: 98	n:10000
DDX11   10000 perm   2 sec   (5000 perm/sec)   p_kst 9.800000e-03   p_cons 9.223000e-01   p_joint 4.650000e-02

Joint ci ratio: 1.121161e-01	ci left: 5.436186e-02	ci right 6.086750e-02	k: 1151	n:20000
Cons ci ratio: 8.021848e-03	ci left: 9.189630e-01	ci right 9.264135e-01	k: 18455	n:20000
KS ci ratio: 2.815335e-01	ci left: 8.248793e-03	ci right 1.099660e-02	k: 191	n:20000
DDX11   20000 perm   6 sec   (3125 perm/sec)   p_kst 9.550000e-03   p_cons 9.227500e-01   p_joint 5.755000e-02

Joint ci ratio: 1.051182e-01	ci left: 4.196671e-02	ci right 4.665539e-02	k: 1328	n:30000
Cons ci ratio: 6.531709e-03	ci left: 9.200612e-01	ci right 9.261232e-01	k: 27694	n:30000
KS ci ratio: 2.271026e-01	ci left: 8.716294e-03	ci right 1.098015e-02	k: 294	n:30000
DDX11   30000 perm   9 sec   (3349 perm/sec)   p_kst 9.800000e-03   p_cons 9.231333e-01   p_joint 4.426667e-02

Joint ci ratio: 9.470102e-02	ci left: 3.912654e-02	ci right 4.304044e-02	k: 1642	n:40000
Cons ci ratio: 5.655752e-03	ci left: 9.204964e-01	ci right 9.257419e-01	k: 36926	n:40000
KS ci ratio: 1.980379e-01	ci left: 8.738975e-03	ci right 1.068320e-02	k: 387	n:40000
DDX11   40000 perm   12 sec   (3440 perm/sec)   p_kst 9.675000e-03   p_cons 9.231500e-01   p_joint 4.105000e-02

Joint ci ratio: 1.002705e-01	ci left: 2.817084e-02	ci right 3.116409e-02	k: 1482	n:50000
Cons ci ratio: 5.079544e-03	ci left: 9.201825e-01	ci right 9.248883e-01	k: 46128	n:50000
KS ci ratio: 1.821264e-01	ci left: 8.343543e-03	ci right 1.003418e-02	k: 458	n:50000
DDX11   50000 perm   14 sec   (3506 perm/sec)   p_kst 9.160000e-03   p_cons 9.225600e-01   p_joint 2.964000e-02

Joint ci ratio: 1.039550e-01	ci left: 2.194526e-02	ci right 2.436783e-02	k: 1388	n:60000
Cons ci ratio: 4.645871e-03	ci left: 9.201123e-01	ci right 9.244134e-01	k: 55337	n:60000
KS ci ratio: 1.684004e-01	ci left: 8.195939e-03	ci right 9.718795e-03	k: 536	n:60000
DDX11   60000 perm   17 sec   (3535 perm/sec)   p_kst 8.933333e-03   p_cons 9.222833e-01   p_joint 2.313333e-02

Joint ci ratio: 1.029648e-01	ci left: 1.924022e-02	ci right 2.134266e-02	k: 1419	n:70000
Cons ci ratio: 4.340003e-03	ci left: 9.189627e-01	ci right 9.229738e-01	k: 64469	n:70000
KS ci ratio: 1.560973e-01	ci left: 8.231256e-03	ci right 9.638474e-03	k: 624	n:70000
DDX11   70000 perm   20 sec   (3538 perm/sec)   p_kst 8.914286e-03   p_cons 9.209857e-01   p_joint 2.027143e-02

Joint ci ratio: 9.032789e-02	ci left: 2.196009e-02	ci right 2.404970e-02	k: 1839	n:80000
Cons ci ratio: 4.048104e-03	ci left: 9.195136e-01	ci right 9.232558e-01	k: 73712	n:80000
KS ci ratio: 1.458393e-01	ci left: 8.296935e-03	ci right 9.614046e-03	k: 715	n:80000
DDX11   80000 perm   23 sec   (3529 perm/sec)   p_kst 8.937500e-03   p_cons 9.214000e-01   p_joint 2.298750e-02

Joint ci ratio: 8.468171e-02	ci left: 2.226986e-02	ci right 2.424992e-02	k: 2092	n:90000
Cons ci ratio: 3.941927e-03	ci left: 9.147634e-01	ci right 9.183874e-01	k: 82493	n:90000
KS ci ratio: 1.379748e-01	ci left: 8.275259e-03	ci right 9.512262e-03	k: 799	n:90000
DDX11   90000 perm   26 sec   (3443 perm/sec)   p_kst 8.877778e-03   p_cons 9.165889e-01   p_joint 2.324444e-02

Joint ci ratio: 9.044029e-02	ci left: 1.760536e-02	ci right 1.928273e-02	k: 1843	n:100000
Cons ci ratio: 3.738863e-03	ci left: 9.148894e-01	ci right 9.183264e-01	k: 91662	n:100000
KS ci ratio: 1.317109e-01	ci left: 8.201406e-03	ci right 9.367354e-03	k: 877	n:100000
DDX11   100000 perm   30 sec   (3368 perm/sec)   p_kst 8.770000e-03   p_cons 9.166200e-01   p_joint 1.843000e-02

Joint ci ratio: 8.602431e-02	ci left: 1.772965e-02	ci right 1.933224e-02	k: 2037	n:110000
Cons ci ratio: 3.562139e-03	ci left: 9.150881e-01	ci right 9.183626e-01	k: 100841	n:110000
KS ci ratio: 1.259636e-01	ci left: 8.177252e-03	ci right 9.285247e-03	k: 959	n:110000
DDX11   110000 perm   33 sec   (3358 perm/sec)   p_kst 8.718182e-03   p_cons 9.167364e-01   p_joint 1.851818e-02

Joint ci ratio: 8.379964e-02	ci left: 1.715733e-02	ci right 1.866610e-02	k: 2148	n:120000
Cons ci ratio: 3.413523e-03	ci left: 9.150214e-01	ci right 9.181584e-01	k: 109992	n:120000
KS ci ratio: 1.207916e-01	ci left: 8.174214e-03	ci right 9.233068e-03	k: 1043	n:120000
DDX11   120000 perm   36 sec   (3331 perm/sec)   p_kst 8.691667e-03   p_cons 9.166000e-01   p_joint 1.790000e-02

Joint ci ratio: 8.259725e-02	ci left: 1.632684e-02	ci right 1.774098e-02	k: 2213	n:130000
Cons ci ratio: 3.281743e-03	ci left: 9.149831e-01	ci right 9.179983e-01	k: 119145	n:130000
KS ci ratio: 1.152841e-01	ci left: 8.306916e-03	ci right 9.330559e-03	k: 1145	n:130000
DDX11   130000 perm   39 sec   (3311 perm/sec)   p_kst 8.807692e-03   p_cons 9.165000e-01   p_joint 1.702308e-02

Joint ci ratio: 8.126096e-02	ci left: 1.568516e-02	ci right 1.702069e-02	k: 2288	n:140000
Cons ci ratio: 3.163098e-03	ci left: 9.150027e-01	ci right 9.179086e-01	k: 128305	n:140000
KS ci ratio: 1.109616e-01	ci left: 8.345185e-03	ci right 9.332462e-03	k: 1236	n:140000
DDX11   140000 perm   43 sec   (3289 perm/sec)   p_kst 8.828571e-03   p_cons 9.164643e-01   p_joint 1.634286e-02

Joint ci ratio: 7.705693e-02	ci left: 1.630604e-02	ci right 1.761939e-02	k: 2543	n:150000
Cons ci ratio: 3.054193e-03	ci left: 9.151357e-01	ci right 9.179415e-01	k: 137482	n:150000
KS ci ratio: 1.070914e-01	ci left: 8.378972e-03	ci right 9.333491e-03	k: 1327	n:150000
DDX11   150000 perm   46 sec   (3261 perm/sec)   p_kst 8.846667e-03   p_cons 9.165467e-01   p_joint 1.695333e-02

Joint ci ratio: 7.636963e-02	ci left: 1.558094e-02	ci right 1.682418e-02	k: 2591	n:160000
Cons ci ratio: 2.956052e-03	ci left: 9.152409e-01	ci right 9.179565e-01	k: 146657	n:160000
KS ci ratio: 1.039329e-01	ci left: 8.354256e-03	ci right 9.276175e-03	k: 1409	n:160000
DDX11   160000 perm   49 sec   (3234 perm/sec)   p_kst 8.806250e-03   p_cons 9.166062e-01   p_joint 1.619375e-02

Joint ci ratio: 7.433675e-02	ci left: 1.549548e-02	ci right 1.669757e-02	k: 2735	n:170000
Cons ci ratio: 2.866691e-03	ci left: 9.153408e-01	ci right 9.179744e-01	k: 155833	n:170000
KS ci ratio: 1.011410e-01	ci left: 8.315610e-03	ci right 9.207147e-03	k: 1488	n:170000
DDX11   170000 perm   53 sec   (3206 perm/sec)   p_kst 8.752941e-03   p_cons 9.166647e-01   p_joint 1.608824e-02

Joint ci ratio: 7.101814e-02	ci left: 1.605298e-02	ci right 1.724044e-02	k: 2995	n:180000
Cons ci ratio: 2.788517e-03	ci left: 9.152349e-01	ci right 9.177961e-01	k: 164974	n:180000
KS ci ratio: 9.830988e-02	ci left: 8.324912e-03	ci right 9.191021e-03	k: 1575	n:180000
DDX11   180000 perm   57 sec   (3176 perm/sec)   p_kst 8.750000e-03   p_cons 9.165222e-01   p_joint 1.663889e-02

Outputting figure to mutsig2_images.part000000000048/DDX11.7_3022_180000_0.00875_0.91652_0.016639.png
                gene_name: DDX11
               theta_stop: 0.098 
                    nperm: 180000 
                     p_ks: 0.0088 
        ci_ks_bounds_left: 0.0083 
       ci_ks_bounds_right: 0.0092 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.017 
     ci_joint_bounds_left: 0.016 
    ci_joint_bounds_right: 0.017 

Current progress: 2 percent done.
DDX60L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.023926e-01	ci left: 7.512676e-03	ci right 1.138119e-02	k: 93	n:10000
Cons ci ratio: 1.238931e+00	ci left: 4.116173e-04	ci right 1.707790e-03	k: 9	n:10000
KS ci ratio: 6.914919e-02	ci left: 2.347184e-01	ci right 2.516315e-01	k: 2431	n:10000
DDX60L   10000 perm   2 sec   (4569 perm/sec)   p_kst 2.431000e-01   p_cons 9.000000e-04   p_joint 9.300000e-03

Joint ci ratio: 3.660847e-01	ci left: 4.658600e-03	ci right 6.788973e-03	k: 113	n:20000
Cons ci ratio: 7.996665e-01	ci left: 7.291366e-04	ci right 1.725068e-03	k: 23	n:20000
KS ci ratio: 4.995521e-02	ci left: 2.294846e-01	ci right 2.412925e-01	k: 4707	n:20000
DDX60L   20000 perm   5 sec   (4096 perm/sec)   p_kst 2.353500e-01   p_cons 1.150000e-03   p_joint 5.650000e-03

Joint ci ratio: 2.997923e-01	ci left: 4.817905e-03	ci right 6.546609e-03	k: 169	n:30000
Cons ci ratio: 7.153210e-01	ci left: 6.474844e-04	ci right 1.388002e-03	k: 29	n:30000
KS ci ratio: 4.039944e-02	ci left: 2.340174e-01	ci right 2.436999e-01	k: 7165	n:30000
DDX60L   30000 perm   8 sec   (3950 perm/sec)   p_kst 2.388333e-01   p_cons 9.666667e-04   p_joint 5.633333e-03

Joint ci ratio: 3.802345e-01	ci left: 2.147477e-03	ci right 3.176844e-03	k: 105	n:40000
Cons ci ratio: 6.273885e-01	ci left: 6.723615e-04	ci right 1.303718e-03	k: 38	n:40000
KS ci ratio: 3.496696e-02	ci left: 2.348769e-01	ci right 2.432610e-01	k: 9562	n:40000
DDX60L   40000 perm   10 sec   (3857 perm/sec)   p_kst 2.390500e-01   p_cons 9.500000e-04   p_joint 2.625000e-03

Joint ci ratio: 3.733423e-01	ci left: 1.790338e-03	ci right 2.629137e-03	k: 109	n:50000
Cons ci ratio: 5.597199e-01	ci left: 7.079104e-04	ci right 1.272622e-03	k: 48	n:50000
KS ci ratio: 3.127500e-02	ci left: 2.353268e-01	ci right 2.428235e-01	k: 11953	n:50000
DDX60L   50000 perm   13 sec   (3781 perm/sec)   p_kst 2.390600e-01   p_cons 9.600000e-04   p_joint 2.180000e-03

Joint ci ratio: 3.447627e-01	ci left: 1.780089e-03	ci right 2.536029e-03	k: 128	n:60000
Cons ci ratio: 5.433661e-01	ci left: 6.329443e-04	ci right 1.117443e-03	k: 51	n:60000
KS ci ratio: 2.846375e-02	ci left: 2.367528e-01	ci right 2.436056e-01	k: 14410	n:60000
DDX60L   60000 perm   16 sec   (3710 perm/sec)   p_kst 2.401667e-01   p_cons 8.500000e-04   p_joint 2.133333e-03

Joint ci ratio: 2.052110e-01	ci left: 4.653535e-03	ci right 5.730965e-03	k: 362	n:70000
Cons ci ratio: 4.859869e-01	ci left: 7.041804e-04	ci right 1.167375e-03	k: 64	n:70000
KS ci ratio: 2.641626e-02	ci left: 2.361288e-01	ci right 2.424642e-01	k: 16750	n:70000
DDX60L   70000 perm   19 sec   (3647 perm/sec)   p_kst 2.392857e-01   p_cons 9.142857e-04   p_joint 5.171429e-03

Joint ci ratio: 2.030426e-01	ci left: 4.166622e-03	ci right 5.119849e-03	k: 370	n:80000
Cons ci ratio: 4.524276e-01	ci left: 7.263916e-04	ci right 1.161116e-03	k: 74	n:80000
KS ci ratio: 2.477907e-02	ci left: 2.353261e-01	ci right 2.412429e-01	k: 19062	n:80000
DDX60L   80000 perm   22 sec   (3588 perm/sec)   p_kst 2.382750e-01   p_cons 9.250000e-04   p_joint 4.625000e-03

Joint ci ratio: 1.973046e-01	ci left: 3.935810e-03	ci right 4.807721e-03	k: 392	n:90000
Cons ci ratio: 4.300751e-01	ci left: 7.246973e-04	ci right 1.130805e-03	k: 82	n:90000
KS ci ratio: 2.338690e-02	ci left: 2.351100e-01	ci right 2.406846e-01	k: 21410	n:90000
DDX60L   90000 perm   25 sec   (3535 perm/sec)   p_kst 2.378889e-01   p_cons 9.111111e-04   p_joint 4.355556e-03

Joint ci ratio: 1.897425e-01	ci left: 3.846711e-03	ci right 4.662455e-03	k: 424	n:100000
Cons ci ratio: 4.019904e-01	ci left: 7.596804e-04	ci right 1.150201e-03	k: 94	n:100000
KS ci ratio: 2.216476e-02	ci left: 2.356122e-01	ci right 2.409030e-01	k: 23825	n:100000
DDX60L   100000 perm   29 sec   (3478 perm/sec)   p_kst 2.382500e-01   p_cons 9.400000e-04   p_joint 4.240000e-03

Joint ci ratio: 2.065509e-01	ci left: 2.926575e-03	ci right 3.609121e-03	k: 358	n:110000
Cons ci ratio: 3.823685e-01	ci left: 7.725682e-04	ci right 1.145462e-03	k: 104	n:110000
KS ci ratio: 2.111667e-02	ci left: 2.360202e-01	ci right 2.410664e-01	k: 26239	n:110000
DDX60L   110000 perm   32 sec   (3423 perm/sec)   p_kst 2.385364e-01   p_cons 9.454545e-04   p_joint 3.254545e-03

Joint ci ratio: 2.256606e-01	ci left: 2.225374e-03	ci right 2.799090e-03	k: 300	n:120000
Cons ci ratio: 3.637854e-01	ci left: 7.912653e-04	ci right 1.150224e-03	k: 115	n:120000
KS ci ratio: 2.024250e-02	ci left: 2.356841e-01	ci right 2.405119e-01	k: 28571	n:120000
DDX60L   120000 perm   36 sec   (3373 perm/sec)   p_kst 2.380917e-01   p_cons 9.583333e-04   p_joint 2.500000e-03

Joint ci ratio: 1.573097e-01	ci left: 4.379784e-03	ci right 5.134876e-03	k: 617	n:130000
Cons ci ratio: 3.347304e-01	ci left: 8.777972e-04	ci right 1.237364e-03	k: 136	n:130000
KS ci ratio: 1.942324e-02	ci left: 2.362467e-01	ci right 2.408880e-01	k: 31013	n:130000
DDX60L   130000 perm   39 sec   (3324 perm/sec)   p_kst 2.385615e-01   p_cons 1.046154e-03   p_joint 4.746154e-03

Joint ci ratio: 1.518787e-01	ci left: 4.375938e-03	ci right 5.101952e-03	k: 662	n:140000
Cons ci ratio: 3.264975e-01	ci left: 8.609466e-04	ci right 1.203119e-03	k: 143	n:140000
KS ci ratio: 1.871586e-02	ci left: 2.363478e-01	ci right 2.408202e-01	k: 33401	n:140000
DDX60L   140000 perm   43 sec   (3276 perm/sec)   p_kst 2.385786e-01   p_cons 1.021429e-03   p_joint 4.728571e-03

Joint ci ratio: 1.571048e-01	ci left: 3.808532e-03	ci right 4.464196e-03	k: 619	n:150000
Cons ci ratio: 3.209783e-01	ci left: 8.341730e-04	ci right 1.158947e-03	k: 148	n:150000
KS ci ratio: 1.808517e-02	ci left: 2.363451e-01	ci right 2.406650e-01	k: 35775	n:150000
DDX60L   150000 perm   47 sec   (3226 perm/sec)   p_kst 2.385000e-01   p_cons 9.866667e-04   p_joint 4.126667e-03

Joint ci ratio: 1.559926e-01	ci left: 3.624518e-03	ci right 4.243671e-03	k: 628	n:160000
Cons ci ratio: 3.068807e-01	ci left: 8.626492e-04	ci right 1.180878e-03	k: 162	n:160000
KS ci ratio: 1.750278e-02	ci left: 2.365817e-01	ci right 2.407653e-01	k: 38187	n:160000
DDX60L   160000 perm   50 sec   (3174 perm/sec)   p_kst 2.386688e-01   p_cons 1.012500e-03   p_joint 3.925000e-03

Joint ci ratio: 1.612403e-01	ci left: 3.185295e-03	ci right 3.749494e-03	k: 588	n:170000
Cons ci ratio: 2.970214e-01	ci left: 8.717112e-04	ci right 1.181006e-03	k: 173	n:170000
KS ci ratio: 1.699306e-02	ci left: 2.363701e-01	ci right 2.404270e-01	k: 40527	n:170000
DDX60L   170000 perm   54 sec   (3131 perm/sec)   p_kst 2.383941e-01   p_cons 1.017647e-03   p_joint 3.458824e-03

Joint ci ratio: 1.566529e-01	ci left: 3.195047e-03	ci right 3.743359e-03	k: 623	n:180000
Cons ci ratio: 2.896266e-01	ci left: 8.696044e-04	ci right 1.169063e-03	k: 182	n:180000
KS ci ratio: 1.650242e-02	ci left: 2.366878e-01	ci right 2.406317e-01	k: 42958	n:180000
DDX60L   180000 perm   58 sec   (3093 perm/sec)   p_kst 2.386556e-01   p_cons 1.011111e-03   p_joint 3.461111e-03

Joint ci ratio: 1.538481e-01	ci left: 3.143230e-03	ci right 3.672101e-03	k: 646	n:190000
Cons ci ratio: 2.805722e-01	ci left: 8.824799e-04	ci right 1.175193e-03	k: 194	n:190000
KS ci ratio: 1.606428e-02	ci left: 2.366953e-01	ci right 2.405337e-01	k: 45336	n:190000
DDX60L   190000 perm   62 sec   (3054 perm/sec)   p_kst 2.386105e-01   p_cons 1.021053e-03   p_joint 3.400000e-03

Joint ci ratio: 1.667670e-01	ci left: 2.525224e-03	ci right 2.989375e-03	k: 550	n:200000
Cons ci ratio: 2.904368e-01	ci left: 7.780021e-04	ci right 1.046803e-03	k: 181	n:200000
KS ci ratio: 1.565583e-02	ci left: 2.367832e-01	ci right 2.405244e-01	k: 47730	n:200000
DDX60L   200000 perm   67 sec   (2998 perm/sec)   p_kst 2.386500e-01   p_cons 9.050000e-04   p_joint 2.750000e-03

Joint ci ratio: 1.635364e-01	ci left: 2.505405e-03	ci right 2.956115e-03	k: 572	n:210000
Cons ci ratio: 2.835116e-01	ci left: 7.807276e-04	ci right 1.042888e-03	k: 190	n:210000
KS ci ratio: 1.526723e-02	ci left: 2.370965e-01	ci right 2.407488e-01	k: 50173	n:210000
DDX60L   210000 perm   71 sec   (2963 perm/sec)   p_kst 2.389190e-01   p_cons 9.047619e-04   p_joint 2.723810e-03

Joint ci ratio: 1.600823e-01	ci left: 2.500557e-03	ci right 2.939980e-03	k: 597	n:220000
Cons ci ratio: 2.770592e-01	ci left: 7.832743e-04	ci right 1.039261e-03	k: 199	n:220000
KS ci ratio: 1.492447e-02	ci left: 2.369380e-01	ci right 2.405053e-01	k: 52518	n:220000
DDX60L   220000 perm   75 sec   (2929 perm/sec)   p_kst 2.387182e-01   p_cons 9.045455e-04   p_joint 2.713636e-03

Joint ci ratio: 1.735582e-01	ci left: 2.020965e-03	ci right 2.409142e-03	k: 508	n:230000
Cons ci ratio: 2.723356e-01	ci left: 7.775574e-04	ci right 1.026602e-03	k: 206	n:230000
KS ci ratio: 1.459663e-02	ci left: 2.369720e-01	ci right 2.404607e-01	k: 54904	n:230000
DDX60L   230000 perm   79 sec   (2895 perm/sec)   p_kst 2.387130e-01   p_cons 8.956522e-04   p_joint 2.208696e-03

Joint ci ratio: 1.696050e-01	ci left: 2.032465e-03	ci right 2.413050e-03	k: 532	n:240000
Cons ci ratio: 2.666016e-01	ci left: 7.801262e-04	ci right 1.023854e-03	k: 215	n:240000
KS ci ratio: 1.428164e-02	ci left: 2.372034e-01	ci right 2.406196e-01	k: 57338	n:240000
DDX60L   240000 perm   84 sec   (2863 perm/sec)   p_kst 2.389083e-01   p_cons 8.958333e-04   p_joint 2.216667e-03

Joint ci ratio: 1.666616e-01	ci left: 2.023968e-03	ci right 2.395724e-03	k: 551	n:250000
Cons ci ratio: 2.635706e-01	ci left: 7.675915e-04	ci right 1.004227e-03	k: 220	n:250000
KS ci ratio: 1.398588e-02	ci left: 2.374251e-01	ci right 2.407730e-01	k: 59774	n:250000
DDX60L   250000 perm   88 sec   (2829 perm/sec)   p_kst 2.390960e-01   p_cons 8.800000e-04   p_joint 2.204000e-03

Joint ci ratio: 1.686709e-01	ci left: 1.898210e-03	ci right 2.251498e-03	k: 538	n:260000
Cons ci ratio: 2.583623e-01	ci left: 7.704202e-04	ci right 1.002477e-03	k: 229	n:260000
KS ci ratio: 1.371095e-02	ci left: 2.375459e-01	ci right 2.408292e-01	k: 62188	n:260000
DDX60L   260000 perm   93 sec   (2799 perm/sec)   p_kst 2.391846e-01   p_cons 8.807692e-04   p_joint 2.069231e-03

Joint ci ratio: 1.686774e-01	ci left: 1.827901e-03	ci right 2.168116e-03	k: 538	n:270000
Cons ci ratio: 2.508384e-01	ci left: 7.904310e-04	ci right 1.020500e-03	k: 243	n:270000
KS ci ratio: 1.346326e-02	ci left: 2.373443e-01	ci right 2.405650e-01	k: 64517	n:270000
DDX60L   270000 perm   98 sec   (2769 perm/sec)   p_kst 2.389519e-01   p_cons 9.000000e-04   p_joint 1.992593e-03

Joint ci ratio: 1.669848e-01	ci left: 1.800252e-03	ci right 2.131621e-03	k: 549	n:280000
Cons ci ratio: 2.468252e-01	ci left: 7.889912e-04	ci right 1.014403e-03	k: 251	n:280000
KS ci ratio: 1.322242e-02	ci left: 2.373251e-01	ci right 2.404875e-01	k: 66893	n:280000
DDX60L   280000 perm   102 sec   (2740 perm/sec)   p_kst 2.389036e-01   p_cons 8.964286e-04   p_joint 1.960714e-03

Joint ci ratio: 1.666871e-01	ci left: 1.744779e-03	ci right 2.065306e-03	k: 551	n:290000
Cons ci ratio: 2.393410e-01	ci left: 8.135985e-04	ci right 1.037947e-03	k: 267	n:290000
KS ci ratio: 1.300553e-02	ci left: 2.369877e-01	ci right 2.400934e-01	k: 69176	n:290000
DDX60L   290000 perm   107 sec   (2711 perm/sec)   p_kst 2.385379e-01   p_cons 9.206897e-04   p_joint 1.900000e-03

Joint ci ratio: 1.636036e-01	ci left: 1.753727e-03	ci right 2.069353e-03	k: 572	n:300000
Cons ci ratio: 2.341551e-01	ci left: 8.241068e-04	ci right 1.045716e-03	k: 279	n:300000
KS ci ratio: 1.278863e-02	ci left: 2.369659e-01	ci right 2.400192e-01	k: 71547	n:300000
DDX60L   300000 perm   112 sec   (2683 perm/sec)   p_kst 2.384900e-01   p_cons 9.300000e-04   p_joint 1.906667e-03

Joint ci ratio: 1.636087e-01	ci left: 1.697151e-03	ci right 2.002604e-03	k: 572	n:310000
Cons ci ratio: 2.316871e-01	ci left: 8.157477e-04	ci right 1.032467e-03	k: 285	n:310000
KS ci ratio: 1.258524e-02	ci left: 2.368590e-01	ci right 2.398620e-01	k: 73891	n:310000
DDX60L   310000 perm   117 sec   (2655 perm/sec)   p_kst 2.383581e-01   p_cons 9.193548e-04   p_joint 1.845161e-03

Joint ci ratio: 1.670054e-01	ci left: 1.575205e-03	ci right 1.865188e-03	k: 549	n:320000
Cons ci ratio: 2.265932e-01	ci left: 8.285496e-04	ci right 1.043154e-03	k: 298	n:320000
KS ci ratio: 1.238785e-02	ci left: 2.368590e-01	ci right 2.398145e-01	k: 76267	n:320000
DDX60L   320000 perm   122 sec   (2628 perm/sec)   p_kst 2.383344e-01   p_cons 9.312500e-04   p_joint 1.715625e-03

Joint ci ratio: 1.641930e-01	ci left: 1.582662e-03	ci right 1.868627e-03	k: 568	n:330000
Cons ci ratio: 2.236218e-01	ci left: 8.263174e-04	ci right 1.037150e-03	k: 306	n:330000
KS ci ratio: 1.220303e-02	ci left: 2.367534e-01	ci right 2.396633e-01	k: 78608	n:330000
DDX60L   330000 perm   127 sec   (2601 perm/sec)   p_kst 2.382061e-01   p_cons 9.272727e-04   p_joint 1.721212e-03

Joint ci ratio: 1.622103e-01	ci left: 1.575607e-03	ci right 1.856524e-03	k: 582	n:340000
Cons ci ratio: 2.218241e-01	ci left: 8.158989e-04	ci right 1.022172e-03	k: 311	n:340000
KS ci ratio: 1.202341e-02	ci left: 2.367396e-01	ci right 2.396061e-01	k: 80978	n:340000
DDX60L   340000 perm   132 sec   (2576 perm/sec)   p_kst 2.381706e-01   p_cons 9.147059e-04   p_joint 1.711765e-03

Joint ci ratio: 1.624937e-01	ci left: 1.525104e-03	ci right 1.797539e-03	k: 580	n:350000
Cons ci ratio: 2.190342e-01	ci left: 8.141827e-04	ci right 1.017084e-03	k: 319	n:350000
KS ci ratio: 1.184991e-02	ci left: 2.367752e-01	ci right 2.396005e-01	k: 83365	n:350000
DDX60L   350000 perm   137 sec   (2551 perm/sec)   p_kst 2.381857e-01   p_cons 9.114286e-04   p_joint 1.657143e-03

Joint ci ratio: 1.611146e-01	ci left: 1.509392e-03	ci right 1.776510e-03	k: 590	n:360000
Cons ci ratio: 2.156897e-01	ci left: 8.178323e-04	ci right 1.018119e-03	k: 329	n:360000
KS ci ratio: 1.167549e-02	ci left: 2.370642e-01	ci right 2.398511e-01	k: 85844	n:360000
DDX60L   360000 perm   142 sec   (2527 perm/sec)   p_kst 2.384556e-01   p_cons 9.138889e-04   p_joint 1.638889e-03

Joint ci ratio: 1.589771e-01	ci left: 1.510109e-03	ci right 1.773470e-03	k: 606	n:370000
Cons ci ratio: 2.128073e-01	ci left: 8.187480e-04	ci right 1.016230e-03	k: 338	n:370000
KS ci ratio: 1.151686e-02	ci left: 2.370763e-01	ci right 2.398251e-01	k: 88226	n:370000
DDX60L   370000 perm   148 sec   (2503 perm/sec)   p_kst 2.384486e-01   p_cons 9.135135e-04   p_joint 1.637838e-03

Joint ci ratio: 1.567965e-01	ci left: 1.513339e-03	ci right 1.773302e-03	k: 623	n:380000
Cons ci ratio: 2.091372e-01	ci left: 8.271130e-04	ci right 1.022731e-03	k: 350	n:380000
KS ci ratio: 1.136394e-02	ci left: 2.371063e-01	ci right 2.398187e-01	k: 90615	n:380000
DDX60L   380000 perm   153 sec   (2480 perm/sec)   p_kst 2.384605e-01   p_cons 9.210526e-04   p_joint 1.639474e-03

Joint ci ratio: 1.553111e-01	ci left: 1.504103e-03	ci right 1.759804e-03	k: 635	n:390000
Cons ci ratio: 2.070831e-01	ci left: 8.229181e-04	ci right 1.015391e-03	k: 357	n:390000
KS ci ratio: 1.121640e-02	ci left: 2.371529e-01	ci right 2.398304e-01	k: 93011	n:390000
DDX60L   390000 perm   159 sec   (2459 perm/sec)   p_kst 2.384897e-01   p_cons 9.153846e-04   p_joint 1.628205e-03

Joint ci ratio: 1.547064e-01	ci left: 1.478514e-03	ci right 1.728795e-03	k: 640	n:400000
Cons ci ratio: 2.053701e-01	ci left: 8.165703e-04	ci right 1.005780e-03	k: 363	n:400000
KS ci ratio: 1.107889e-02	ci left: 2.370527e-01	ci right 2.396961e-01	k: 95349	n:400000
DDX60L   400000 perm   164 sec   (2438 perm/sec)   p_kst 2.383725e-01   p_cons 9.075000e-04   p_joint 1.600000e-03

Joint ci ratio: 1.538702e-01	ci left: 1.458865e-03	ci right 1.704363e-03	k: 647	n:410000
Cons ci ratio: 2.039749e-01	ci left: 8.082237e-04	ci right 9.940683e-04	k: 368	n:410000
KS ci ratio: 1.094322e-02	ci left: 2.370598e-01	ci right 2.396707e-01	k: 97729	n:410000
DDX60L   410000 perm   170 sec   (2418 perm/sec)   p_kst 2.383634e-01   p_cons 8.975610e-04   p_joint 1.578049e-03

Joint ci ratio: 1.516623e-01	ci left: 1.467640e-03	ci right 1.710748e-03	k: 666	n:420000
Cons ci ratio: 2.012658e-01	ci left: 8.115820e-04	ci right 9.954157e-04	k: 378	n:420000
KS ci ratio: 1.081185e-02	ci left: 2.370858e-01	ci right 2.396654e-01	k: 100117	n:420000
DDX60L   420000 perm   175 sec   (2397 perm/sec)   p_kst 2.383738e-01   p_cons 9.000000e-04   p_joint 1.585714e-03

Joint ci ratio: 1.258515e-01	ci left: 2.109457e-03	ci right 2.394991e-03	k: 967	n:430000
Cons ci ratio: 1.981525e-01	ci left: 8.192199e-04	ci right 1.001567e-03	k: 390	n:430000
KS ci ratio: 1.068750e-02	ci left: 2.370295e-01	ci right 2.395787e-01	k: 102470	n:430000
DDX60L   430000 perm   181 sec   (2376 perm/sec)   p_kst 2.383023e-01   p_cons 9.069767e-04   p_joint 2.248837e-03

Joint ci ratio: 1.245084e-01	ci left: 2.107748e-03	ci right 2.389780e-03	k: 988	n:440000
Cons ci ratio: 1.956660e-01	ci left: 8.222082e-04	ci right 1.002650e-03	k: 400	n:440000
KS ci ratio: 1.056813e-02	ci left: 2.369487e-01	ci right 2.394684e-01	k: 104811	n:440000
DDX60L   440000 perm   187 sec   (2356 perm/sec)   p_kst 2.382068e-01   p_cons 9.090909e-04   p_joint 2.245455e-03

Joint ci ratio: 1.265807e-01	ci left: 1.992023e-03	ci right 2.263340e-03	k: 956	n:450000
Cons ci ratio: 1.930359e-01	ci left: 8.271922e-04	ci right 1.006001e-03	k: 411	n:450000
KS ci ratio: 1.045140e-02	ci left: 2.369160e-01	ci right 2.394073e-01	k: 107172	n:450000
DDX60L   450000 perm   193 sec   (2334 perm/sec)   p_kst 2.381600e-01   p_cons 9.133333e-04   p_joint 2.124444e-03

Joint ci ratio: 1.275895e-01	ci left: 1.917142e-03	ci right 2.180498e-03	k: 941	n:460000
Cons ci ratio: 1.911889e-01	ci left: 8.257645e-04	ci right 1.002358e-03	k: 419	n:460000
KS ci ratio: 1.033740e-02	ci left: 2.369218e-01	ci right 2.393858e-01	k: 109550	n:460000
DDX60L   460000 perm   199 sec   (2313 perm/sec)   p_kst 2.381522e-01   p_cons 9.108696e-04   p_joint 2.045652e-03

Joint ci ratio: 1.268523e-01	ci left: 1.899010e-03	ci right 2.158254e-03	k: 952	n:470000
Cons ci ratio: 1.893939e-01	ci left: 8.244054e-04	ci right 9.988628e-04	k: 427	n:470000
KS ci ratio: 1.022045e-02	ci left: 2.371611e-01	ci right 2.395996e-01	k: 112038	n:470000
DDX60L   470000 perm   205 sec   (2293 perm/sec)   p_kst 2.383787e-01   p_cons 9.085106e-04   p_joint 2.025532e-03

Joint ci ratio: 1.263248e-01	ci left: 1.875584e-03	ci right 2.130487e-03	k: 960	n:480000
Cons ci ratio: 1.865807e-01	ci left: 8.330395e-04	ci right 1.006409e-03	k: 440	n:480000
KS ci ratio: 1.011284e-02	ci left: 2.371951e-01	ci right 2.396081e-01	k: 114432	n:480000
DDX60L   480000 perm   211 sec   (2272 perm/sec)   p_kst 2.384000e-01   p_cons 9.166667e-04   p_joint 2.000000e-03

Joint ci ratio: 1.252225e-01	ci left: 1.870909e-03	ci right 2.122793e-03	k: 977	n:490000
Cons ci ratio: 1.855327e-01	ci left: 8.257672e-04	ci right 9.965493e-04	k: 445	n:490000
KS ci ratio: 1.000794e-02	ci left: 2.372502e-01	ci right 2.396386e-01	k: 116837	n:490000
DDX60L   490000 perm   218 sec   (2251 perm/sec)   p_kst 2.384429e-01   p_cons 9.081633e-04   p_joint 1.993878e-03

Joint ci ratio: 1.237132e-01	ci left: 1.879997e-03	ci right 2.129830e-03	k: 1001	n:500000
Cons ci ratio: 1.836886e-01	ci left: 8.264201e-04	ci right 9.954493e-04	k: 454	n:500000
KS ci ratio: 9.907048e-03	ci left: 2.372733e-01	ci right 2.396377e-01	k: 119227	n:500000
DDX60L   500000 perm   225 sec   (2222 perm/sec)   p_kst 2.384540e-01   p_cons 9.080000e-04   p_joint 2.002000e-03

Joint ci ratio: 1.227377e-01	ci left: 1.873539e-03	ci right 2.120408e-03	k: 1017	n:510000
Cons ci ratio: 1.817026e-01	ci left: 8.289270e-04	ci right 9.964341e-04	k: 464	n:510000
KS ci ratio: 9.809787e-03	ci left: 2.372722e-01	ci right 2.396132e-01	k: 121605	n:510000
DDX60L   510000 perm   235 sec   (2173 perm/sec)   p_kst 2.384412e-01   p_cons 9.098039e-04   p_joint 1.994118e-03

Joint ci ratio: 1.258761e-01	ci left: 1.744338e-03	ci right 1.980498e-03	k: 967	n:520000
Cons ci ratio: 1.801596e-01	ci left: 8.276739e-04	ci right 9.933526e-04	k: 472	n:520000
KS ci ratio: 9.714615e-03	ci left: 2.372980e-01	ci right 2.396164e-01	k: 123997	n:520000
DDX60L   520000 perm   243 sec   (2137 perm/sec)   p_kst 2.384558e-01   p_cons 9.076923e-04   p_joint 1.859615e-03

Joint ci ratio: 1.247854e-01	ci left: 1.742496e-03	ci right 1.976211e-03	k: 984	n:530000
Cons ci ratio: 1.784697e-01	ci left: 8.282764e-04	ci right 9.923526e-04	k: 481	n:530000
KS ci ratio: 9.623560e-03	ci left: 2.372703e-01	ci right 2.395665e-01	k: 126361	n:530000
DDX60L   530000 perm   250 sec   (2120 perm/sec)   p_kst 2.384170e-01   p_cons 9.075472e-04   p_joint 1.856604e-03

Joint ci ratio: 1.238463e-01	ci left: 1.737141e-03	ci right 1.968256e-03	k: 999	n:540000
Cons ci ratio: 1.766466e-01	ci left: 8.306335e-04	ci right 9.933163e-04	k: 491	n:540000
KS ci ratio: 9.532685e-03	ci left: 2.373324e-01	ci right 2.396075e-01	k: 128773	n:540000
DDX60L   540000 perm   257 sec   (2102 perm/sec)   p_kst 2.384685e-01   p_cons 9.092593e-04   p_joint 1.850000e-03

Joint ci ratio: 1.220875e-01	ci left: 1.756663e-03	ci right 1.986817e-03	k: 1028	n:550000
Cons ci ratio: 1.741849e-01	ci left: 8.398684e-04	ci right 1.001827e-03	k: 505	n:550000
KS ci ratio: 9.444903e-03	ci left: 2.373706e-01	ci right 2.396249e-01	k: 131173	n:550000
DDX60L   550000 perm   264 sec   (2086 perm/sec)   p_kst 2.384964e-01   p_cons 9.181818e-04   p_joint 1.869091e-03

Joint ci ratio: 1.240370e-01	ci left: 1.669906e-03	ci right 1.892442e-03	k: 996	n:560000
Cons ci ratio: 1.731618e-01	ci left: 8.351191e-04	ci right 9.951166e-04	k: 511	n:560000
KS ci ratio: 9.203200e-03	ci left: 2.435691e-01	ci right 2.458228e-01	k: 137029	n:560000
DDX60L   560000 perm   271 sec   (2069 perm/sec)   p_kst 2.446946e-01   p_cons 9.125000e-04   p_joint 1.778571e-03

Joint ci ratio: 1.234204e-01	ci left: 1.657609e-03	ci right 1.877329e-03	k: 1006	n:570000
Cons ci ratio: 1.721565e-01	ci left: 8.305392e-04	ci right 9.886394e-04	k: 517	n:570000
KS ci ratio: 9.118303e-03	ci left: 2.437333e-01	ci right 2.459676e-01	k: 139564	n:570000
DDX60L   570000 perm   278 sec   (2053 perm/sec)   p_kst 2.448491e-01   p_cons 9.070175e-04   p_joint 1.764912e-03

Joint ci ratio: 1.238543e-01	ci left: 1.617332e-03	ci right 1.832522e-03	k: 999	n:580000
Cons ci ratio: 1.703569e-01	ci left: 8.343723e-04	ci right 9.913714e-04	k: 528	n:580000
KS ci ratio: 9.042792e-03	ci left: 2.436026e-01	ci right 2.458172e-01	k: 141931	n:580000
DDX60L   580000 perm   285 sec   (2037 perm/sec)   p_kst 2.447086e-01   p_cons 9.103448e-04   p_joint 1.722414e-03

Joint ci ratio: 1.229966e-01	ci left: 1.612916e-03	ci right 1.825923e-03	k: 1013	n:590000
Cons ci ratio: 1.686126e-01	ci left: 8.380838e-04	ci right 9.940025e-04	k: 539	n:590000
KS ci ratio: 8.965835e-03	ci left: 2.436119e-01	ci right 2.458076e-01	k: 144378	n:590000
DDX60L   590000 perm   292 sec   (2022 perm/sec)   p_kst 2.447085e-01   p_cons 9.135593e-04   p_joint 1.716949e-03

Joint ci ratio: 1.222161e-01	ci left: 1.607035e-03	ci right 1.817822e-03	k: 1026	n:600000
Cons ci ratio: 1.669208e-01	ci left: 8.416794e-04	ci right 9.965380e-04	k: 550	n:600000
KS ci ratio: 8.890369e-03	ci left: 2.436392e-01	ci right 2.458166e-01	k: 146836	n:600000
DDX60L   600000 perm   299 sec   (2007 perm/sec)   p_kst 2.447267e-01   p_cons 9.166667e-04   p_joint 1.710000e-03

Joint ci ratio: 1.225169e-01	ci left: 1.572743e-03	ci right 1.779577e-03	k: 1021	n:610000
Cons ci ratio: 1.658708e-01	ci left: 8.388788e-04	ci right 9.921543e-04	k: 557	n:610000
KS ci ratio: 8.815252e-03	ci left: 2.437296e-01	ci right 2.458892e-01	k: 149333	n:610000
DDX60L   610000 perm   306 sec   (1992 perm/sec)   p_kst 2.448082e-01   p_cons 9.131148e-04   p_joint 1.673770e-03

Joint ci ratio: 1.227595e-01	ci left: 1.541121e-03	ci right 1.744226e-03	k: 1017	n:620000
Cons ci ratio: 1.644041e-01	ci left: 8.408111e-04	ci right 9.929468e-04	k: 567	n:620000
KS ci ratio: 8.741360e-03	ci left: 2.438445e-01	ci right 2.459869e-01	k: 151847	n:620000
DDX60L   620000 perm   313 sec   (1978 perm/sec)   p_kst 2.449145e-01   p_cons 9.145161e-04   p_joint 1.640323e-03

Joint ci ratio: 1.070924e-01	ci left: 2.008544e-03	ci right 2.237343e-03	k: 1336	n:630000
Cons ci ratio: 1.629756e-01	ci left: 8.426877e-04	ci right 9.937083e-04	k: 577	n:630000
KS ci ratio: 8.673797e-03	ci left: 2.437640e-01	ci right 2.458891e-01	k: 154240	n:630000
DDX60L   630000 perm   321 sec   (1964 perm/sec)   p_kst 2.448254e-01   p_cons 9.158730e-04   p_joint 2.120635e-03

Joint ci ratio: 1.078650e-01	ci left: 1.948267e-03	ci right 2.171903e-03	k: 1317	n:640000
Cons ci ratio: 1.615837e-01	ci left: 8.445112e-04	ci right 9.944405e-04	k: 587	n:640000
KS ci ratio: 8.600252e-03	ci left: 2.440091e-01	ci right 2.461182e-01	k: 156840	n:640000
DDX60L   640000 perm   328 sec   (1950 perm/sec)   p_kst 2.450625e-01   p_cons 9.171875e-04   p_joint 2.057813e-03

Joint ci ratio: 1.070157e-01	ci left: 1.949734e-03	ci right 2.171665e-03	k: 1338	n:650000
Cons ci ratio: 1.609015e-01	ci left: 8.389005e-04	ci right 9.871442e-04	k: 592	n:650000
KS ci ratio: 8.536383e-03	ci left: 2.439072e-01	ci right 2.459997e-01	k: 159219	n:650000
DDX60L   650000 perm   336 sec   (1936 perm/sec)   p_kst 2.449523e-01   p_cons 9.107692e-04   p_joint 2.058462e-03

Joint ci ratio: 1.063824e-01	ci left: 1.943787e-03	ci right 2.163650e-03	k: 1354	n:660000
Cons ci ratio: 1.604968e-01	ci left: 8.305522e-04	ci right 9.769159e-04	k: 595	n:660000
KS ci ratio: 8.473568e-03	ci left: 2.438236e-01	ci right 2.458999e-01	k: 161608	n:660000
DDX60L   660000 perm   344 sec   (1921 perm/sec)   p_kst 2.448606e-01   p_cons 9.015152e-04   p_joint 2.051515e-03

Joint ci ratio: 1.059540e-01	ci left: 1.930757e-03	ci right 2.148211e-03	k: 1365	n:670000
Cons ci ratio: 1.590357e-01	ci left: 8.339176e-04	ci right 9.794087e-04	k: 606	n:670000
KS ci ratio: 8.409776e-03	ci left: 2.438453e-01	ci right 2.459061e-01	k: 164066	n:670000
DDX60L   670000 perm   351 sec   (1907 perm/sec)   p_kst 2.448746e-01   p_cons 9.044776e-04   p_joint 2.037313e-03

Joint ci ratio: 1.051108e-01	ci left: 1.933863e-03	ci right 2.149827e-03	k: 1387	n:680000
Cons ci ratio: 1.577415e-01	ci left: 8.357771e-04	ci right 9.802938e-04	k: 616	n:680000
KS ci ratio: 8.349263e-03	ci left: 2.437843e-01	ci right 2.458297e-01	k: 166468	n:680000
DDX60L   680000 perm   359 sec   (1895 perm/sec)   p_kst 2.448059e-01   p_cons 9.058824e-04   p_joint 2.039706e-03

Joint ci ratio: 1.046600e-01	ci left: 1.922770e-03	ci right 2.136518e-03	k: 1399	n:690000
Cons ci ratio: 1.571067e-01	ci left: 8.306252e-04	ci right 9.736185e-04	k: 621	n:690000
KS ci ratio: 8.285133e-03	ci left: 2.439436e-01	ci right 2.459745e-01	k: 169021	n:690000
DDX60L   690000 perm   367 sec   (1882 perm/sec)   p_kst 2.449580e-01   p_cons 9.000000e-04   p_joint 2.027536e-03

Joint ci ratio: 1.051898e-01	ci left: 1.875824e-03	ci right 2.085474e-03	k: 1385	n:700000
Cons ci ratio: 1.561061e-01	ci left: 8.297398e-04	ci right 9.715858e-04	k: 629	n:700000
KS ci ratio: 8.226808e-03	ci left: 2.439029e-01	ci right 2.459192e-01	k: 171437	n:700000
DDX60L   700000 perm   375 sec   (1868 perm/sec)   p_kst 2.449100e-01   p_cons 8.985714e-04   p_joint 1.978571e-03

Joint ci ratio: 9.758428e-02	ci left: 2.156923e-03	ci right 2.379563e-03	k: 1609	n:710000
Cons ci ratio: 1.550029e-01	ci left: 8.302360e-04	ci right 9.710706e-04	k: 638	n:710000
KS ci ratio: 8.169231e-03	ci left: 2.438846e-01	ci right 2.458865e-01	k: 173868	n:710000
DDX60L   710000 perm   383 sec   (1854 perm/sec)   p_kst 2.448845e-01   p_cons 8.985915e-04   p_joint 2.266197e-03

Joint ci ratio: 9.810630e-02	ci left: 2.103930e-03	ci right 2.322329e-03	k: 1592	n:720000
Cons ci ratio: 1.538040e-01	ci left: 8.320572e-04	ci right 9.720085e-04	k: 648	n:720000
KS ci ratio: 8.111049e-03	ci left: 2.439486e-01	ci right 2.459367e-01	k: 176358	n:720000
DDX60L   720000 perm   394 sec   (1828 perm/sec)   p_kst 2.449417e-01   p_cons 9.000000e-04   p_joint 2.211111e-03

Joint ci ratio: 9.792315e-02	ci left: 2.083125e-03	ci right 2.298938e-03	k: 1598	n:730000
Cons ci ratio: 1.526325e-01	ci left: 8.338327e-04	ci right 9.729166e-04	k: 658	n:730000
KS ci ratio: 8.056359e-03	ci left: 2.439070e-01	ci right 2.458813e-01	k: 178772	n:730000
DDX60L   730000 perm   402 sec   (1815 perm/sec)   p_kst 2.448932e-01   p_cons 9.013699e-04   p_joint 2.189041e-03

Joint ci ratio: 9.789393e-02	ci left: 2.056292e-03	ci right 2.269257e-03	k: 1599	n:740000
Cons ci ratio: 1.510361e-01	ci left: 8.407651e-04	ci right 9.794060e-04	k: 672	n:740000
KS ci ratio: 8.001474e-03	ci left: 2.439259e-01	ci right 2.458869e-01	k: 181230	n:740000
DDX60L   740000 perm   411 sec   (1801 perm/sec)   p_kst 2.449054e-01   p_cons 9.081081e-04   p_joint 2.160811e-03

Joint ci ratio: 9.786470e-02	ci left: 2.030174e-03	ci right 2.240368e-03	k: 1600	n:750000
Cons ci ratio: 1.500362e-01	ci left: 8.411029e-04	ci right 9.787989e-04	k: 681	n:750000
KS ci ratio: 7.947324e-03	ci left: 2.439617e-01	ci right 2.459096e-01	k: 183701	n:750000
DDX60L   750000 perm   421 sec   (1780 perm/sec)   p_kst 2.449347e-01   p_cons 9.080000e-04   p_joint 2.133333e-03

Joint ci ratio: 9.789672e-02	ci left: 2.002176e-03	ci right 2.209543e-03	k: 1599	n:760000
Cons ci ratio: 1.487331e-01	ci left: 8.452352e-04	ci right 9.822990e-04	k: 693	n:760000
KS ci ratio: 7.894398e-03	ci left: 2.439900e-01	ci right 2.459251e-01	k: 186167	n:760000
DDX60L   760000 perm   433 sec   (1755 perm/sec)   p_kst 2.449566e-01   p_cons 9.118421e-04   p_joint 2.103947e-03

Joint ci ratio: 9.720046e-02	ci left: 2.005315e-03	ci right 2.211446e-03	k: 1622	n:770000
Cons ci ratio: 1.475680e-01	ci left: 8.480143e-04	ci right 9.843567e-04	k: 704	n:770000
KS ci ratio: 7.843893e-03	ci left: 2.439528e-01	ci right 2.458751e-01	k: 188583	n:770000
DDX60L   770000 perm   443 sec   (1740 perm/sec)   p_kst 2.449130e-01   p_cons 9.142857e-04   p_joint 2.106494e-03

Joint ci ratio: 9.646014e-02	ci left: 2.010882e-03	ci right 2.215921e-03	k: 1647	n:780000
Cons ci ratio: 1.470479e-01	ci left: 8.433162e-04	ci right 9.783833e-04	k: 709	n:780000
KS ci ratio: 7.791995e-03	ci left: 2.440279e-01	ci right 2.459381e-01	k: 191086	n:780000
DDX60L   780000 perm   451 sec   (1728 perm/sec)   p_kst 2.449821e-01   p_cons 9.089744e-04   p_joint 2.111538e-03

Joint ci ratio: 9.599559e-02	ci left: 2.005193e-03	ci right 2.208612e-03	k: 1663	n:790000
Cons ci ratio: 1.457196e-01	ci left: 8.484945e-04	ci right 9.830565e-04	k: 722	n:790000
KS ci ratio: 7.741643e-03	ci left: 2.440759e-01	ci right 2.459740e-01	k: 193569	n:790000
DDX60L   790000 perm   460 sec   (1717 perm/sec)   p_kst 2.450241e-01   p_cons 9.139241e-04   p_joint 2.105063e-03

Joint ci ratio: 9.702477e-02	ci left: 1.937431e-03	ci right 2.136203e-03	k: 1628	n:800000
Cons ci ratio: 1.446234e-01	ci left: 8.511389e-04	ci right 9.850172e-04	k: 733	n:800000
KS ci ratio: 7.694152e-03	ci left: 2.440316e-01	ci right 2.459177e-01	k: 195979	n:800000
DDX60L   800000 perm   469 sec   (1707 perm/sec)   p_kst 2.449737e-01   p_cons 9.162500e-04   p_joint 2.035000e-03

Joint ci ratio: 9.684744e-02	ci left: 1.920739e-03	ci right 2.117418e-03	k: 1634	n:810000
Cons ci ratio: 1.435515e-01	ci left: 8.537218e-04	ci right 9.869259e-04	k: 744	n:810000
KS ci ratio: 7.647626e-03	ci left: 2.439835e-01	ci right 2.458578e-01	k: 198385	n:810000
DDX60L   810000 perm   478 sec   (1696 perm/sec)   p_kst 2.449198e-01   p_cons 9.185185e-04   p_joint 2.017284e-03

Joint ci ratio: 9.623137e-02	ci left: 1.922307e-03	ci right 2.117823e-03	k: 1655	n:820000
Cons ci ratio: 1.423149e-01	ci left: 8.585974e-04	ci right 9.913103e-04	k: 757	n:820000
KS ci ratio: 7.600857e-03	ci left: 2.439890e-01	ci right 2.458518e-01	k: 200834	n:820000
DDX60L   820000 perm   487 sec   (1686 perm/sec)   p_kst 2.449195e-01   p_cons 9.231707e-04   p_joint 2.018293e-03

Joint ci ratio: 9.579878e-02	ci left: 1.916784e-03	ci right 2.110814e-03	k: 1670	n:830000
Cons ci ratio: 1.419413e-01	ci left: 8.529006e-04	ci right 9.843576e-04	k: 761	n:830000
KS ci ratio: 7.554541e-03	ci left: 2.440137e-01	ci right 2.458652e-01	k: 203299	n:830000
DDX60L   830000 perm   495 sec   (1675 perm/sec)   p_kst 2.449386e-01   p_cons 9.168675e-04   p_joint 2.012048e-03

Joint ci ratio: 9.545710e-02	ci left: 1.907909e-03	ci right 2.100313e-03	k: 1682	n:840000
Cons ci ratio: 1.413861e-01	ci left: 8.496366e-04	ci right 9.800350e-04	k: 767	n:840000
KS ci ratio: 7.510101e-03	ci left: 2.439866e-01	ci right 2.458270e-01	k: 205721	n:840000
DDX60L   840000 perm   505 sec   (1665 perm/sec)   p_kst 2.449060e-01   p_cons 9.130952e-04   p_joint 2.002381e-03

Joint ci ratio: 9.500679e-02	ci left: 1.903838e-03	ci right 2.094875e-03	k: 1698	n:850000
Cons ci ratio: 1.408372e-01	ci left: 8.464504e-04	ci right 9.758132e-04	k: 773	n:850000
KS ci ratio: 7.465795e-03	ci left: 2.439920e-01	ci right 2.458215e-01	k: 208170	n:850000
DDX60L   850000 perm   514 sec   (1655 perm/sec)   p_kst 2.449059e-01   p_cons 9.094118e-04   p_joint 1.997647e-03

Joint ci ratio: 9.461809e-02	ci left: 1.897593e-03	ci right 2.087181e-03	k: 1712	n:860000
Cons ci ratio: 1.399361e-01	ci left: 8.478275e-04	ci right 9.765025e-04	k: 783	n:860000
KS ci ratio: 7.422731e-03	ci left: 2.439740e-01	ci right 2.457928e-01	k: 210599	n:860000
DDX60L   860000 perm   523 sec   (1645 perm/sec)   p_kst 2.448826e-01   p_cons 9.104651e-04   p_joint 1.990698e-03

Joint ci ratio: 9.450868e-02	ci left: 1.880270e-03	ci right 2.067898e-03	k: 1716	n:870000
Cons ci ratio: 1.394923e-01	ci left: 8.436285e-04	ci right 9.712264e-04	k: 788	n:870000
KS ci ratio: 7.379669e-03	ci left: 2.439932e-01	ci right 2.458016e-01	k: 213060	n:870000
DDX60L   870000 perm   532 sec   (1635 perm/sec)   p_kst 2.448966e-01   p_cons 9.057471e-04   p_joint 1.972414e-03

Joint ci ratio: 9.409880e-02	ci left: 1.875547e-03	ci right 2.061847e-03	k: 1731	n:880000
Cons ci ratio: 1.381845e-01	ci left: 8.504954e-04	ci right 9.778266e-04	k: 803	n:880000
KS ci ratio: 7.337732e-03	ci left: 2.439927e-01	ci right 2.457908e-01	k: 215504	n:880000
DDX60L   880000 perm   541 sec   (1625 perm/sec)   p_kst 2.448909e-01   p_cons 9.125000e-04   p_joint 1.967045e-03

Joint ci ratio: 9.390989e-02	ci left: 1.862153e-03	ci right 2.046731e-03	k: 1738	n:890000
Cons ci ratio: 1.375022e-01	ci left: 8.496180e-04	ci right 9.761384e-04	k: 811	n:890000
KS ci ratio: 7.295637e-03	ci left: 2.440360e-01	ci right 2.458240e-01	k: 217987	n:890000
DDX60L   890000 perm   551 sec   (1616 perm/sec)   p_kst 2.449292e-01   p_cons 9.112360e-04   p_joint 1.952809e-03

Joint ci ratio: 9.345434e-02	ci left: 1.859908e-03	ci right 2.043321e-03	k: 1755	n:900000
Cons ci ratio: 1.369135e-01	ci left: 8.476885e-04	ci right 9.733371e-04	k: 818	n:900000
KS ci ratio: 7.254432e-03	ci left: 2.440695e-01	ci right 2.458477e-01	k: 220462	n:900000
DDX60L   900000 perm   560 sec   (1606 perm/sec)   p_kst 2.449578e-01   p_cons 9.088889e-04   p_joint 1.950000e-03

Joint ci ratio: 9.287424e-02	ci left: 1.863083e-03	ci right 2.045605e-03	k: 1777	n:910000
Cons ci ratio: 1.360030e-01	ci left: 8.500486e-04	ci right 9.751414e-04	k: 829	n:910000
KS ci ratio: 7.213747e-03	ci left: 2.441111e-01	ci right 2.458795e-01	k: 222945	n:910000
DDX60L   910000 perm   570 sec   (1597 perm/sec)   p_kst 2.449945e-01   p_cons 9.109890e-04   p_joint 1.952747e-03

Joint ci ratio: 9.358992e-02	ci left: 1.814166e-03	ci right 1.993341e-03	k: 1750	n:920000
Cons ci ratio: 1.355143e-01	ci left: 8.471091e-04	ci right 9.712852e-04	k: 835	n:920000
KS ci ratio: 7.175129e-03	ci left: 2.440802e-01	ci right 2.458388e-01	k: 225362	n:920000
DDX60L   920000 perm   580 sec   (1587 perm/sec)   p_kst 2.449587e-01   p_cons 9.076087e-04   p_joint 1.902174e-03

Joint ci ratio: 9.791561e-02	ci left: 1.636172e-03	ci right 1.805665e-03	k: 1599	n:930000
Cons ci ratio: 1.349507e-01	ci left: 8.452726e-04	ci right 9.686227e-04	k: 842	n:930000
KS ci ratio: 7.134989e-03	ci left: 2.441605e-01	ci right 2.459099e-01	k: 227882	n:930000
DDX60L   930000 perm   590 sec   (1576 perm/sec)   p_kst 2.450344e-01   p_cons 9.053763e-04   p_joint 1.719355e-03

Joint ci ratio: 9.764181e-02	ci left: 1.628106e-03	ci right 1.796265e-03	k: 1608	n:940000
Cons ci ratio: 1.342360e-01	ci left: 8.455324e-04	ci right 9.682149e-04	k: 851	n:940000
KS ci ratio: 7.098208e-03	ci left: 2.440989e-01	ci right 2.458388e-01	k: 230270	n:940000
DDX60L   940000 perm   600 sec   (1567 perm/sec)   p_kst 2.449681e-01   p_cons 9.053191e-04   p_joint 1.710638e-03

Joint ci ratio: 8.498163e-02	ci left: 2.139747e-03	ci right 2.330677e-03	k: 2122	n:950000
Cons ci ratio: 1.335326e-01	ci left: 8.457884e-04	ci right 9.678140e-04	k: 860	n:950000
KS ci ratio: 7.062231e-03	ci left: 2.440261e-01	ci right 2.457566e-01	k: 232646	n:950000
DDX60L   950000 perm   610 sec   (1557 perm/sec)   p_kst 2.448905e-01   p_cons 9.052632e-04   p_joint 2.233684e-03

Joint ci ratio: 8.542737e-02	ci left: 2.095027e-03	ci right 2.282997e-03	k: 2100	n:960000
Cons ci ratio: 1.327638e-01	ci left: 8.470478e-04	ci right 9.684960e-04	k: 870	n:960000
KS ci ratio: 7.023827e-03	ci left: 2.441108e-01	ci right 2.458324e-01	k: 235172	n:960000
DDX60L   960000 perm   620 sec   (1548 perm/sec)   p_kst 2.449708e-01   p_cons 9.062500e-04   p_joint 2.187500e-03

Joint ci ratio: 8.500365e-02	ci left: 2.094617e-03	ci right 2.281571e-03	k: 2121	n:970000
Cons ci ratio: 1.321583e-01	ci left: 8.462895e-04	ci right 9.670321e-04	k: 878	n:970000
KS ci ratio: 6.986802e-03	ci left: 2.441536e-01	ci right 2.458665e-01	k: 237659	n:970000
DDX60L   970000 perm   630 sec   (1540 perm/sec)   p_kst 2.450093e-01   p_cons 9.051546e-04   p_joint 2.186598e-03

Joint ci ratio: 8.631905e-02	ci left: 2.009332e-03	ci right 2.191590e-03	k: 2057	n:980000
Cons ci ratio: 1.315611e-01	ci left: 8.455479e-04	ci right 9.655968e-04	k: 886	n:980000
KS ci ratio: 6.950970e-03	ci left: 2.441630e-01	ci right 2.458671e-01	k: 240114	n:980000
DDX60L   980000 perm   640 sec   (1531 perm/sec)   p_kst 2.450143e-01   p_cons 9.040816e-04   p_joint 2.098980e-03

Joint ci ratio: 8.613145e-02	ci left: 1.997931e-03	ci right 2.178740e-03	k: 2066	n:990000
Cons ci ratio: 1.308987e-01	ci left: 8.457994e-04	ci right 9.652325e-04	k: 895	n:990000
KS ci ratio: 6.916307e-03	ci left: 2.441389e-01	ci right 2.458343e-01	k: 242536	n:990000
DDX60L   990000 perm   650 sec   (1522 perm/sec)   p_kst 2.449859e-01   p_cons 9.040404e-04   p_joint 2.086869e-03

Joint ci ratio: 8.565612e-02	ci left: 2.000457e-03	ci right 2.180446e-03	k: 2089	n:1000000
Cons ci ratio: 1.303905e-01	ci left: 8.441126e-04	ci right 9.628089e-04	k: 902	n:1000000
KS ci ratio: 6.881636e-03	ci left: 2.441433e-01	ci right 2.458302e-01	k: 244986	n:1000000
DDX60L   1000000 perm   661 sec   (1514 perm/sec)   p_kst 2.449860e-01   p_cons 9.020000e-04   p_joint 2.089000e-03

Joint ci ratio: 8.193061e-02	ci left: 2.168715e-03	ci right 2.354950e-03	k: 2283	n:1010000
Cons ci ratio: 1.382787e-01	ci left: 7.400669e-04	ci right 8.509471e-04	k: 802	n:1010000
KS ci ratio: 6.846309e-03	ci left: 2.442109e-01	ci right 2.458896e-01	k: 247500	n:1010000
DDX60L   1010000 perm   671 sec   (1506 perm/sec)   p_kst 2.450495e-01   p_cons 7.940594e-04   p_joint 2.260396e-03

Joint ci ratio: 7.937728e-02	ci left: 2.290591e-03	ci right 2.480880e-03	k: 2432	n:1020000
Cons ci ratio: 1.374255e-01	ci left: 7.422772e-04	ci right 8.527462e-04	k: 812	n:1020000
KS ci ratio: 6.813704e-03	ci left: 2.441587e-01	ci right 2.458290e-01	k: 249893	n:1020000
DDX60L   1020000 perm   681 sec   (1497 perm/sec)   p_kst 2.449931e-01   p_cons 7.960784e-04   p_joint 2.384314e-03

Joint ci ratio: 7.941093e-02	ci left: 2.266448e-03	ci right 2.454814e-03	k: 2430	n:1030000
Cons ci ratio: 1.367543e-01	ci left: 7.425712e-04	ci right 8.525003e-04	k: 820	n:1030000
KS ci ratio: 6.780831e-03	ci left: 2.441473e-01	ci right 2.458094e-01	k: 252327	n:1030000
DDX60L   1030000 perm   692 sec   (1489 perm/sec)   p_kst 2.449777e-01   p_cons 7.961165e-04   p_joint 2.359223e-03

Joint ci ratio: 7.897345e-02	ci left: 2.270103e-03	ci right 2.457686e-03	k: 2457	n:1040000
Cons ci ratio: 1.362575e-01	ci left: 7.410033e-04	ci right 8.502694e-04	k: 826	n:1040000
KS ci ratio: 6.748078e-03	ci left: 2.441554e-01	ci right 2.458095e-01	k: 254781	n:1040000
DDX60L   1040000 perm   702 sec   (1481 perm/sec)   p_kst 2.449817e-01   p_cons 7.942308e-04   p_joint 2.362500e-03

Joint ci ratio: 7.894215e-02	ci left: 2.250349e-03	ci right 2.436223e-03	k: 2459	n:1050000
Cons ci ratio: 1.355220e-01	ci left: 7.422262e-04	ci right 8.510342e-04	k: 835	n:1050000
KS ci ratio: 6.717005e-03	ci left: 2.440967e-01	ci right 2.457428e-01	k: 257165	n:1050000
DDX60L   1050000 perm   713 sec   (1472 perm/sec)   p_kst 2.449190e-01   p_cons 7.952381e-04   p_joint 2.341905e-03

Joint ci ratio: 7.867103e-02	ci left: 2.244841e-03	ci right 2.429593e-03	k: 2476	n:1060000
Cons ci ratio: 1.349582e-01	ci left: 7.416044e-04	ci right 8.498327e-04	k: 842	n:1060000
KS ci ratio: 6.685011e-03	ci left: 2.441136e-01	ci right 2.457519e-01	k: 259628	n:1060000
DDX60L   1060000 perm   724 sec   (1464 perm/sec)   p_kst 2.449321e-01   p_cons 7.943396e-04   p_joint 2.335849e-03

Joint ci ratio: 7.824560e-02	ci left: 2.248600e-03	ci right 2.432615e-03	k: 2503	n:1070000
Cons ci ratio: 1.337729e-01	ci left: 7.482211e-04	ci right 8.563798e-04	k: 857	n:1070000
KS ci ratio: 6.653789e-03	ci left: 2.441125e-01	ci right 2.457431e-01	k: 262072	n:1070000
DDX60L   1070000 perm   735 sec   (1456 perm/sec)   p_kst 2.449271e-01   p_cons 8.009346e-04   p_joint 2.339252e-03

Joint ci ratio: 7.798157e-02	ci left: 2.243212e-03	ci right 2.426140e-03	k: 2520	n:1080000
Cons ci ratio: 1.331535e-01	ci left: 7.484532e-04	ci right 8.561049e-04	k: 865	n:1080000
KS ci ratio: 6.622171e-03	ci left: 2.441576e-01	ci right 2.457808e-01	k: 264566	n:1080000
DDX60L   1080000 perm   746 sec   (1448 perm/sec)   p_kst 2.449685e-01   p_cons 8.009259e-04   p_joint 2.333333e-03

Joint ci ratio: 7.806003e-02	ci left: 2.218134e-03	ci right 2.399206e-03	k: 2515	n:1090000
Cons ci ratio: 1.325427e-01	ci left: 7.486822e-04	ci right 8.558340e-04	k: 873	n:1090000
KS ci ratio: 6.592243e-03	ci left: 2.441323e-01	ci right 2.457479e-01	k: 266984	n:1090000
DDX60L   1090000 perm   757 sec   (1440 perm/sec)   p_kst 2.449394e-01   p_cons 8.009174e-04   p_joint 2.307339e-03

Joint ci ratio: 7.816992e-02	ci left: 2.191728e-03	ci right 2.370909e-03	k: 2508	n:1100000
Cons ci ratio: 1.318655e-01	ci left: 7.497873e-04	ci right 8.565059e-04	k: 882	n:1100000
KS ci ratio: 6.562200e-03	ci left: 2.441366e-01	ci right 2.457448e-01	k: 269434	n:1100000
DDX60L   1100000 perm   768 sec   (1432 perm/sec)   p_kst 2.449400e-01   p_cons 8.018182e-04   p_joint 2.280000e-03

Joint ci ratio: 7.842174e-02	ci left: 2.157849e-03	ci right 2.334854e-03	k: 2492	n:1110000
Cons ci ratio: 1.310515e-01	ci left: 7.526165e-04	ci right 8.590251e-04	k: 893	n:1110000
KS ci ratio: 6.533169e-03	ci left: 2.441065e-01	ci right 2.457074e-01	k: 271846	n:1110000
DDX60L   1110000 perm   779 sec   (1424 perm/sec)   p_kst 2.449063e-01   p_cons 8.045045e-04   p_joint 2.245045e-03

Joint ci ratio: 7.796933e-02	ci left: 2.163970e-03	ci right 2.340406e-03	k: 2521	n:1120000
Cons ci ratio: 1.301805e-01	ci left: 7.562610e-04	ci right 8.624194e-04	k: 905	n:1120000
KS ci ratio: 6.503452e-03	ci left: 2.441377e-01	ci right 2.457315e-01	k: 274326	n:1120000
DDX60L   1120000 perm   790 sec   (1417 perm/sec)   p_kst 2.449339e-01   p_cons 8.080357e-04   p_joint 2.250893e-03

Joint ci ratio: 7.763149e-02	ci left: 2.163910e-03	ci right 2.339542e-03	k: 2543	n:1130000
Cons ci ratio: 1.292562e-01	ci left: 7.606996e-04	ci right 8.666647e-04	k: 918	n:1130000
KS ci ratio: 6.474896e-03	ci left: 2.441250e-01	ci right 2.457117e-01	k: 276757	n:1130000
DDX60L   1130000 perm   802 sec   (1410 perm/sec)   p_kst 2.449177e-01   p_cons 8.123894e-04   p_joint 2.250442e-03

Joint ci ratio: 8.436287e-02	ci left: 1.810585e-03	ci right 1.970910e-03	k: 2154	n:1140000
Cons ci ratio: 1.288364e-01	ci left: 7.591201e-04	ci right 8.644954e-04	k: 924	n:1140000
KS ci ratio: 6.544459e-03	ci left: 2.385959e-01	ci right 2.401633e-01	k: 272892	n:1140000
DDX60L   1140000 perm   813 sec   (1402 perm/sec)   p_kst 2.393789e-01   p_cons 8.105263e-04   p_joint 1.889474e-03

Joint ci ratio: 8.403215e-02	ci left: 1.809312e-03	ci right 1.968865e-03	k: 2171	n:1150000
Cons ci ratio: 1.283518e-01	ci left: 7.584101e-04	ci right 8.632608e-04	k: 931	n:1150000
KS ci ratio: 6.516857e-03	ci left: 2.385482e-01	ci right 2.401087e-01	k: 275227	n:1150000
DDX60L   1150000 perm   824 sec   (1395 perm/sec)   p_kst 2.393278e-01   p_cons 8.095652e-04   p_joint 1.887826e-03

Joint ci ratio: 8.372444e-02	ci left: 1.807218e-03	ci right 1.965975e-03	k: 2187	n:1160000
Cons ci ratio: 1.278044e-01	ci left: 7.585477e-04	ci right 8.629363e-04	k: 939	n:1160000
KS ci ratio: 6.489141e-03	ci left: 2.385272e-01	ci right 2.400810e-01	k: 277592	n:1160000
DDX60L   1160000 perm   836 sec   (1388 perm/sec)   p_kst 2.393034e-01   p_cons 8.094828e-04   p_joint 1.885345e-03

Joint ci ratio: 8.391746e-02	ci left: 1.783403e-03	ci right 1.940447e-03	k: 2177	n:1170000
Cons ci ratio: 1.273313e-01	ci left: 7.578564e-04	ci right 8.617345e-04	k: 946	n:1170000
KS ci ratio: 6.460577e-03	ci left: 2.385741e-01	ci right 2.401212e-01	k: 280036	n:1170000
DDX60L   1170000 perm   847 sec   (1381 perm/sec)   p_kst 2.393470e-01   p_cons 8.085470e-04   p_joint 1.860684e-03

Joint ci ratio: 8.368747e-02	ci left: 1.778246e-03	ci right 1.934385e-03	k: 2189	n:1180000
Cons ci ratio: 1.267304e-01	ci left: 7.588186e-04	ci right 8.623010e-04	k: 955	n:1180000
KS ci ratio: 6.433570e-03	ci left: 2.385533e-01	ci right 2.400938e-01	k: 282401	n:1180000
DDX60L   1180000 perm   859 sec   (1374 perm/sec)   p_kst 2.393229e-01   p_cons 8.093220e-04   p_joint 1.855085e-03

Joint ci ratio: 8.376480e-02	ci left: 1.760011e-03	ci right 1.914699e-03	k: 2185	n:1190000
Cons ci ratio: 1.263347e-01	ci left: 7.573244e-04	ci right 8.602563e-04	k: 961	n:1190000
KS ci ratio: 6.406958e-03	ci left: 2.385294e-01	ci right 2.400634e-01	k: 284762	n:1190000
DDX60L   1190000 perm   871 sec   (1367 perm/sec)   p_kst 2.392958e-01   p_cons 8.075630e-04   p_joint 1.836134e-03

Joint ci ratio: 8.357415e-02	ci left: 1.753503e-03	ci right 1.907251e-03	k: 2195	n:1200000
Cons ci ratio: 1.261385e-01	ci left: 7.534343e-04	ci right 8.556666e-04	k: 964	n:1200000
KS ci ratio: 6.380922e-03	ci left: 2.384919e-01	ci right 2.400194e-01	k: 287106	n:1200000
DDX60L   1200000 perm   883 sec   (1360 perm/sec)   p_kst 2.392550e-01   p_cons 8.033333e-04   p_joint 1.829167e-03

Joint ci ratio: 8.325257e-02	ci left: 1.752768e-03	ci right 1.905831e-03	k: 2212	n:1210000
Cons ci ratio: 1.256188e-01	ci left: 7.536110e-04	ci right 8.554146e-04	k: 972	n:1210000
KS ci ratio: 6.354580e-03	ci left: 2.384905e-01	ci right 2.400116e-01	k: 289493	n:1210000
DDX60L   1210000 perm   894 sec   (1353 perm/sec)   p_kst 2.392504e-01   p_cons 8.033058e-04   p_joint 1.828099e-03

Joint ci ratio: 8.300930e-02	ci left: 1.748835e-03	ci right 1.901087e-03	k: 2225	n:1220000
Cons ci ratio: 1.254259e-01	ci left: 7.498155e-04	ci right 8.509393e-04	k: 975	n:1220000
KS ci ratio: 6.328177e-03	ci left: 2.385112e-01	ci right 2.400261e-01	k: 291907	n:1220000
DDX60L   1220000 perm   906 sec   (1346 perm/sec)   p_kst 2.392680e-01   p_cons 7.991803e-04   p_joint 1.823770e-03

Joint ci ratio: 8.274963e-02	ci left: 1.745763e-03	ci right 1.897249e-03	k: 2239	n:1230000
Cons ci ratio: 1.251060e-01	ci left: 7.476571e-04	ci right 8.482135e-04	k: 980	n:1230000
KS ci ratio: 6.302016e-03	ci left: 2.385365e-01	ci right 2.400453e-01	k: 294327	n:1230000
DDX60L   1230000 perm   918 sec   (1339 perm/sec)   p_kst 2.392902e-01   p_cons 7.967480e-04   p_joint 1.820325e-03

Joint ci ratio: 8.249238e-02	ci left: 1.742741e-03	ci right 1.893472e-03	k: 2253	n:1240000
Cons ci ratio: 1.248519e-01	ci left: 7.447525e-04	ci right 8.446998e-04	k: 984	n:1240000
KS ci ratio: 6.276635e-03	ci left: 2.385347e-01	ci right 2.400374e-01	k: 296714	n:1240000
DDX60L   1240000 perm   931 sec   (1332 perm/sec)   p_kst 2.392855e-01   p_cons 7.935484e-04   p_joint 1.816935e-03

Joint ci ratio: 8.236496e-02	ci left: 1.734283e-03	ci right 1.884040e-03	k: 2260	n:1250000
Cons ci ratio: 1.242854e-01	ci left: 7.457701e-04	ci right 8.453664e-04	k: 993	n:1250000
KS ci ratio: 6.251380e-03	ci left: 2.385435e-01	ci right 2.400401e-01	k: 299114	n:1250000
DDX60L   1250000 perm   943 sec   (1326 perm/sec)   p_kst 2.392912e-01   p_cons 7.944000e-04   p_joint 1.808000e-03

Joint ci ratio: 8.278846e-02	ci left: 1.702641e-03	ci right 1.850458e-03	k: 2237	n:1260000
Cons ci ratio: 1.238501e-01	ci left: 7.452344e-04	ci right 8.443850e-04	k: 1000	n:1260000
KS ci ratio: 6.227065e-03	ci left: 2.385148e-01	ci right 2.400054e-01	k: 301467	n:1260000
DDX60L   1260000 perm   955 sec   (1319 perm/sec)   p_kst 2.392595e-01   p_cons 7.936508e-04   p_joint 1.775397e-03

Joint ci ratio: 7.924924e-02	ci left: 1.846617e-03	ci right 1.999763e-03	k: 2441	n:1270000
Cons ci ratio: 1.230534e-01	ci left: 7.492867e-04	ci right 8.482884e-04	k: 1013	n:1270000
KS ci ratio: 6.202522e-03	ci left: 2.385165e-01	ci right 2.400012e-01	k: 303858	n:1270000
DDX60L   1270000 perm   968 sec   (1312 perm/sec)   p_kst 2.392583e-01   p_cons 7.976378e-04   p_joint 1.922047e-03

Joint ci ratio: 7.177348e-02	ci left: 2.241535e-03	ci right 2.409167e-03	k: 2975	n:1280000
Cons ci ratio: 1.224509e-01	ci left: 7.510055e-04	ci right 8.497133e-04	k: 1023	n:1280000
KS ci ratio: 6.178360e-03	ci left: 2.385127e-01	ci right 2.399916e-01	k: 306242	n:1280000
DDX60L   1280000 perm   980 sec   (1306 perm/sec)   p_kst 2.392516e-01   p_cons 7.992188e-04   p_joint 2.324219e-03

Joint ci ratio: 7.277358e-02	ci left: 2.162499e-03	ci right 2.326570e-03	k: 2894	n:1290000
Cons ci ratio: 1.220939e-01	ci left: 7.496926e-04	ci right 8.479198e-04	k: 1029	n:1290000
KS ci ratio: 6.154871e-03	ci left: 2.384857e-01	ci right 2.399589e-01	k: 308596	n:1290000
DDX60L   1290000 perm   993 sec   (1300 perm/sec)   p_kst 2.392217e-01   p_cons 7.976744e-04   p_joint 2.243411e-03

Joint ci ratio: 7.249865e-02	ci left: 2.162480e-03	ci right 2.325904e-03	k: 2916	n:1300000
Cons ci ratio: 1.216225e-01	ci left: 7.498920e-04	ci right 8.477387e-04	k: 1037	n:1300000
KS ci ratio: 6.130858e-03	ci left: 2.385061e-01	ci right 2.399736e-01	k: 311011	n:1300000
DDX60L   1300000 perm   1005 sec   (1294 perm/sec)   p_kst 2.392392e-01   p_cons 7.976923e-04   p_joint 2.243077e-03

Joint ci ratio: 7.242465e-02	ci left: 2.150470e-03	ci right 2.312812e-03	k: 2922	n:1310000
Cons ci ratio: 1.210407e-01	ci left: 7.515696e-04	ci right 8.491325e-04	k: 1047	n:1310000
KS ci ratio: 6.106573e-03	ci left: 2.385589e-01	ci right 2.400209e-01	k: 313469	n:1310000
DDX60L   1310000 perm   1018 sec   (1287 perm/sec)   p_kst 2.392893e-01   p_cons 7.992366e-04   p_joint 2.230534e-03

Joint ci ratio: 7.547534e-02	ci left: 1.962406e-03	ci right 2.117065e-03	k: 2691	n:1320000
Cons ci ratio: 1.206958e-01	ci left: 7.502839e-04	ci right 8.473825e-04	k: 1053	n:1320000
KS ci ratio: 6.083688e-03	ci left: 2.385443e-01	ci right 2.400007e-01	k: 315839	n:1320000
DDX60L   1320000 perm   1030 sec   (1281 perm/sec)   p_kst 2.392720e-01   p_cons 7.977273e-04   p_joint 2.038636e-03

Joint ci ratio: 7.526609e-02	ci left: 1.958716e-03	ci right 2.112638e-03	k: 2706	n:1330000
Cons ci ratio: 1.204107e-01	ci left: 7.482887e-04	ci right 8.448840e-04	k: 1058	n:1330000
KS ci ratio: 6.061509e-03	ci left: 2.385030e-01	ci right 2.399538e-01	k: 318173	n:1330000
DDX60L   1330000 perm   1043 sec   (1275 perm/sec)   p_kst 2.392278e-01   p_cons 7.954887e-04   p_joint 2.034586e-03

Joint ci ratio: 7.516934e-02	ci left: 1.949224e-03	ci right 2.102195e-03	k: 2713	n:1340000
Cons ci ratio: 1.199584e-01	ci left: 7.484951e-04	ci right 8.447284e-04	k: 1066	n:1340000
KS ci ratio: 6.039175e-03	ci left: 2.384861e-01	ci right 2.399314e-01	k: 320539	n:1340000
DDX60L   1340000 perm   1056 sec   (1269 perm/sec)   p_kst 2.392082e-01   p_cons 7.955224e-04   p_joint 2.024627e-03

Joint ci ratio: 6.816532e-02	ci left: 2.360388e-03	ci right 2.527684e-03	k: 3298	n:1350000
Cons ci ratio: 1.195112e-01	ci left: 7.486991e-04	ci right 8.445745e-04	k: 1074	n:1350000
KS ci ratio: 6.016142e-03	ci left: 2.385265e-01	ci right 2.399665e-01	k: 322982	n:1350000
DDX60L   1350000 perm   1069 sec   (1263 perm/sec)   p_kst 2.392459e-01   p_cons 7.955556e-04   p_joint 2.442963e-03

Joint ci ratio: 6.791872e-02	ci left: 2.360379e-03	ci right 2.527046e-03	k: 3322	n:1360000
Cons ci ratio: 1.190690e-01	ci left: 7.489008e-04	ci right 8.444222e-04	k: 1082	n:1360000
KS ci ratio: 5.993650e-03	ci left: 2.385493e-01	ci right 2.399841e-01	k: 325402	n:1360000
DDX60L   1360000 perm   1082 sec   (1257 perm/sec)   p_kst 2.392662e-01   p_cons 7.955882e-04   p_joint 2.442647e-03

Joint ci ratio: 6.771536e-02	ci left: 2.357501e-03	ci right 2.523446e-03	k: 3342	n:1370000
Cons ci ratio: 1.187952e-01	ci left: 7.469754e-04	ci right 8.420167e-04	k: 1087	n:1370000
KS ci ratio: 5.971696e-03	ci left: 2.385544e-01	ci right 2.399839e-01	k: 327798	n:1370000
DDX60L   1370000 perm   1095 sec   (1251 perm/sec)   p_kst 2.392686e-01   p_cons 7.934307e-04   p_joint 2.439416e-03

Joint ci ratio: 6.777696e-02	ci left: 2.336142e-03	ci right 2.500740e-03	k: 3336	n:1380000
Cons ci ratio: 1.183069e-01	ci left: 7.478909e-04	ci right 8.426302e-04	k: 1096	n:1380000
KS ci ratio: 5.949720e-03	ci left: 2.385753e-01	ci right 2.399997e-01	k: 330216	n:1380000
DDX60L   1380000 perm   1108 sec   (1245 perm/sec)   p_kst 2.392870e-01   p_cons 7.942029e-04   p_joint 2.417391e-03

Joint ci ratio: 6.921663e-02	ci left: 2.222458e-03	ci right 2.382505e-03	k: 3199	n:1390000
Cons ci ratio: 1.177712e-01	ci left: 7.494923e-04	ci right 8.439746e-04	k: 1106	n:1390000
KS ci ratio: 5.927388e-03	ci left: 2.386326e-01	ci right 2.400520e-01	k: 332685	n:1390000
DDX60L   1390000 perm   1121 sec   (1240 perm/sec)   p_kst 2.393417e-01   p_cons 7.956835e-04   p_joint 2.301439e-03

Joint ci ratio: 6.900141e-02	ci left: 2.220622e-03	ci right 2.380020e-03	k: 3219	n:1400000
Cons ci ratio: 1.175592e-01	ci left: 7.469118e-04	ci right 8.408875e-04	k: 1110	n:1400000
KS ci ratio: 5.905722e-03	ci left: 2.386634e-01	ci right 2.400777e-01	k: 335118	n:1400000
DDX60L   1400000 perm   1135 sec   (1234 perm/sec)   p_kst 2.393700e-01   p_cons 7.928571e-04   p_joint 2.299286e-03

Joint ci ratio: 6.549655e-02	ci left: 2.451030e-03	ci right 2.617691e-03	k: 3572	n:1410000
Cons ci ratio: 1.172431e-01	ci left: 7.457448e-04	ci right 8.393040e-04	k: 1116	n:1410000
KS ci ratio: 5.885095e-03	ci left: 2.386441e-01	ci right 2.400534e-01	k: 337481	n:1410000
DDX60L   1410000 perm   1148 sec   (1228 perm/sec)   p_kst 2.393482e-01   p_cons 7.914894e-04   p_joint 2.533333e-03

Joint ci ratio: 6.520506e-02	ci left: 2.455936e-03	ci right 2.622160e-03	k: 3604	n:1420000
Cons ci ratio: 1.165665e-01	ci left: 7.493804e-04	ci right 8.428158e-04	k: 1129	n:1420000
KS ci ratio: 5.864772e-03	ci left: 2.386195e-01	ci right 2.400238e-01	k: 339836	n:1420000
DDX60L   1420000 perm   1162 sec   (1222 perm/sec)   p_kst 2.393211e-01   p_cons 7.950704e-04   p_joint 2.538028e-03

Joint ci ratio: 6.501607e-02	ci left: 2.453208e-03	ci right 2.618747e-03	k: 3625	n:1430000
Cons ci ratio: 1.162072e-01	ci left: 7.488926e-04	ci right 8.419596e-04	k: 1136	n:1430000
KS ci ratio: 5.844008e-03	ci left: 2.386358e-01	ci right 2.400352e-01	k: 342249	n:1430000
DDX60L   1430000 perm   1175 sec   (1217 perm/sec)   p_kst 2.393350e-01   p_cons 7.944056e-04   p_joint 2.534965e-03

Joint ci ratio: 6.469546e-02	ci left: 2.460766e-03	ci right 2.625967e-03	k: 3661	n:1440000
Cons ci ratio: 1.155986e-01	ci left: 7.517838e-04	ci right 8.446874e-04	k: 1148	n:1440000
KS ci ratio: 5.822874e-03	ci left: 2.386886e-01	ci right 2.400832e-01	k: 344715	n:1440000
DDX60L   1440000 perm   1189 sec   (1211 perm/sec)   p_kst 2.393854e-01   p_cons 7.972222e-04   p_joint 2.542361e-03

Joint ci ratio: 6.447576e-02	ci left: 2.460759e-03	ci right 2.625376e-03	k: 3686	n:1450000
Cons ci ratio: 1.150491e-01	ci left: 7.539665e-04	ci right 8.466668e-04	k: 1159	n:1450000
KS ci ratio: 5.802847e-03	ci left: 2.386856e-01	ci right 2.400754e-01	k: 347101	n:1450000
DDX60L   1450000 perm   1203 sec   (1206 perm/sec)   p_kst 2.393800e-01   p_cons 7.993103e-04   p_joint 2.542069e-03

Joint ci ratio: 6.549022e-02	ci left: 2.367761e-03	ci right 2.528744e-03	k: 3573	n:1460000
Cons ci ratio: 1.147035e-01	ci left: 7.534591e-04	ci right 8.458000e-04	k: 1166	n:1460000
KS ci ratio: 5.783123e-03	ci left: 2.386765e-01	ci right 2.400615e-01	k: 349478	n:1460000
DDX60L   1460000 perm   1217 sec   (1200 perm/sec)   p_kst 2.393685e-01   p_cons 7.986301e-04   p_joint 2.447260e-03

Joint ci ratio: 6.535343e-02	ci left: 2.361690e-03	ci right 2.521913e-03	k: 3588	n:1470000
Cons ci ratio: 1.143611e-01	ci left: 7.529590e-04	ci right 8.449445e-04	k: 1173	n:1470000
KS ci ratio: 5.763039e-03	ci left: 2.387029e-01	ci right 2.400832e-01	k: 351907	n:1470000
DDX60L   1470000 perm   1231 sec   (1195 perm/sec)   p_kst 2.393925e-01   p_cons 7.979592e-04   p_joint 2.440816e-03

Joint ci ratio: 6.602115e-02	ci left: 2.297881e-03	ci right 2.455428e-03	k: 3516	n:1480000
Cons ci ratio: 1.138290e-01	ci left: 7.550918e-04	ci right 8.468798e-04	k: 1184	n:1480000
KS ci ratio: 5.743727e-03	ci left: 2.386931e-01	ci right 2.400687e-01	k: 354283	n:1480000
DDX60L   1480000 perm   1244 sec   (1189 perm/sec)   p_kst 2.393804e-01   p_cons 8.000000e-04   p_joint 2.375676e-03

Joint ci ratio: 6.577841e-02	ci left: 2.299621e-03	ci right 2.456686e-03	k: 3542	n:1490000
Cons ci ratio: 1.133042e-01	ci left: 7.571969e-04	ci right 8.487882e-04	k: 1195	n:1490000
KS ci ratio: 5.724302e-03	ci left: 2.387029e-01	ci right 2.400739e-01	k: 356688	n:1490000
DDX60L   1490000 perm   1259 sec   (1184 perm/sec)   p_kst 2.393879e-01   p_cons 8.020134e-04   p_joint 2.377181e-03

Joint ci ratio: 6.555674e-02	ci left: 2.300027e-03	ci right 2.456570e-03	k: 3566	n:1500000
Cons ci ratio: 1.129271e-01	ci left: 7.573314e-04	ci right 8.486138e-04	k: 1203	n:1500000
KS ci ratio: 5.704489e-03	ci left: 2.387499e-01	ci right 2.401164e-01	k: 359149	n:1500000
DDX60L   1500000 perm   1273 sec   (1178 perm/sec)   p_kst 2.394327e-01   p_cons 8.020000e-04   p_joint 2.377333e-03

Joint ci ratio: 6.534642e-02	ci left: 2.299778e-03	ci right 2.455783e-03	k: 3589	n:1510000
Cons ci ratio: 1.124147e-01	ci left: 7.593955e-04	ci right 8.504837e-04	k: 1214	n:1510000
KS ci ratio: 5.685355e-03	ci left: 2.387659e-01	ci right 2.401278e-01	k: 361564	n:1510000
DDX60L   1510000 perm   1288 sec   (1173 perm/sec)   p_kst 2.394464e-01   p_cons 8.039735e-04   p_joint 2.376821e-03

Joint ci ratio: 6.544752e-02	ci left: 2.277529e-03	ci right 2.432272e-03	k: 3578	n:1520000
Cons ci ratio: 1.120464e-01	ci left: 7.595149e-04	ci right 8.502993e-04	k: 1222	n:1520000
KS ci ratio: 5.666760e-03	ci left: 2.387593e-01	ci right 2.401167e-01	k: 363945	n:1520000
DDX60L   1520000 perm   1302 sec   (1167 perm/sec)   p_kst 2.394375e-01   p_cons 8.039474e-04   p_joint 2.353947e-03

Joint ci ratio: 6.545719e-02	ci left: 2.261999e-03	ci right 2.415711e-03	k: 3577	n:1530000
Cons ci ratio: 1.117272e-01	ci left: 7.589978e-04	ci right 8.494449e-04	k: 1229	n:1530000
KS ci ratio: 5.648103e-03	ci left: 2.387684e-01	ci right 2.401215e-01	k: 366350	n:1530000
DDX60L   1530000 perm   1316 sec   (1162 perm/sec)   p_kst 2.394444e-01   p_cons 8.032680e-04   p_joint 2.337908e-03

Joint ci ratio: 6.633688e-02	ci left: 2.187275e-03	ci right 2.337983e-03	k: 3483	n:1540000
Cons ci ratio: 1.113656e-01	ci left: 7.591192e-04	ci right 8.492687e-04	k: 1237	n:1540000
KS ci ratio: 5.629469e-03	ci left: 2.387878e-01	ci right 2.401365e-01	k: 368771	n:1540000
DDX60L   1540000 perm   1331 sec   (1157 perm/sec)   p_kst 2.394617e-01   p_cons 8.032468e-04   p_joint 2.261688e-03

Joint ci ratio: 6.625165e-02	ci left: 2.178873e-03	ci right 2.328803e-03	k: 3492	n:1550000
Cons ci ratio: 1.111862e-01	ci left: 7.567304e-04	ci right 8.464421e-04	k: 1241	n:1550000
KS ci ratio: 5.611306e-03	ci left: 2.387883e-01	ci right 2.401326e-01	k: 371163	n:1550000
DDX60L   1550000 perm   1346 sec   (1152 perm/sec)   p_kst 2.394600e-01   p_cons 8.006452e-04   p_joint 2.252903e-03

Joint ci ratio: 6.231639e-02	ci left: 2.451269e-03	ci right 2.609562e-03	k: 3946	n:1560000
Cons ci ratio: 1.105206e-01	ci left: 7.612284e-04	ci right 8.508979e-04	k: 1256	n:1560000
KS ci ratio: 5.593514e-03	ci left: 2.387760e-01	ci right 2.401160e-01	k: 373535	n:1560000
DDX60L   1560000 perm   1360 sec   (1147 perm/sec)   p_kst 2.394455e-01   p_cons 8.051282e-04   p_joint 2.529487e-03

Joint ci ratio: 6.177787e-02	ci left: 2.478924e-03	ci right 2.637570e-03	k: 4015	n:1570000
Cons ci ratio: 1.099967e-01	ci left: 7.638124e-04	ci right 8.533322e-04	k: 1268	n:1570000
KS ci ratio: 5.574653e-03	ci left: 2.388447e-01	ci right 2.401805e-01	k: 376034	n:1570000
DDX60L   1570000 perm   1375 sec   (1142 perm/sec)   p_kst 2.395121e-01   p_cons 8.076433e-04   p_joint 2.557325e-03

Joint ci ratio: 6.160177e-02	ci left: 2.477567e-03	ci right 2.635658e-03	k: 4038	n:1580000
Cons ci ratio: 1.098671e-01	ci left: 7.608246e-04	ci right 8.498823e-04	k: 1271	n:1580000
KS ci ratio: 5.556811e-03	ci left: 2.388581e-01	ci right 2.401897e-01	k: 378447	n:1580000
DDX60L   1580000 perm   1390 sec   (1137 perm/sec)   p_kst 2.395234e-01   p_cons 8.044304e-04   p_joint 2.555696e-03

Joint ci ratio: 6.137418e-02	ci left: 2.480562e-03	ci right 2.638239e-03	k: 4068	n:1590000
Cons ci ratio: 1.094377e-01	ci left: 7.621564e-04	ci right 8.509988e-04	k: 1281	n:1590000
KS ci ratio: 5.539082e-03	ci left: 2.388751e-01	ci right 2.402026e-01	k: 380866	n:1590000
DDX60L   1590000 perm   1405 sec   (1132 perm/sec)   p_kst 2.395384e-01   p_cons 8.056604e-04   p_joint 2.558491e-03

Joint ci ratio: 6.119400e-02	ci left: 2.479829e-03	ci right 2.636980e-03	k: 4092	n:1600000
Cons ci ratio: 1.091825e-01	ci left: 7.610404e-04	ci right 8.495326e-04	k: 1287	n:1600000
KS ci ratio: 5.521872e-03	ci left: 2.388688e-01	ci right 2.401921e-01	k: 383248	n:1600000
DDX60L   1600000 perm   1420 sec   (1127 perm/sec)   p_kst 2.395300e-01   p_cons 8.043750e-04   p_joint 2.557500e-03

Joint ci ratio: 6.103027e-02	ci left: 2.477882e-03	ci right 2.634475e-03	k: 4114	n:1610000
Cons ci ratio: 1.088030e-01	ci left: 7.617511e-04	ci right 8.499984e-04	k: 1296	n:1610000
KS ci ratio: 5.505507e-03	ci left: 2.388173e-01	ci right 2.401364e-01	k: 385557	n:1610000
DDX60L   1610000 perm   1435 sec   (1122 perm/sec)   p_kst 2.394764e-01   p_cons 8.049689e-04   p_joint 2.555280e-03

Joint ci ratio: 6.097878e-02	ci left: 2.466841e-03	ci right 2.622600e-03	k: 4121	n:1620000
Cons ci ratio: 1.084274e-01	ci left: 7.624536e-04	ci right 8.504579e-04	k: 1305	n:1620000
KS ci ratio: 5.488793e-03	ci left: 2.387992e-01	ci right 2.401141e-01	k: 387919	n:1620000
DDX60L   1620000 perm   1450 sec   (1117 perm/sec)   p_kst 2.394562e-01   p_cons 8.055556e-04   p_joint 2.543827e-03

Joint ci ratio: 6.112811e-02	ci left: 2.439624e-03	ci right 2.594054e-03	k: 4101	n:1630000
Cons ci ratio: 1.081793e-01	ci left: 7.613572e-04	ci right 8.490210e-04	k: 1311	n:1630000
KS ci ratio: 5.471770e-03	ci left: 2.388119e-01	ci right 2.401228e-01	k: 390331	n:1630000
DDX60L   1630000 perm   1465 sec   (1112 perm/sec)   p_kst 2.394669e-01   p_cons 8.042945e-04   p_joint 2.515951e-03

Joint ci ratio: 6.099456e-02	ci left: 2.435556e-03	ci right 2.589380e-03	k: 4119	n:1640000
Cons ci ratio: 1.078919e-01	ci left: 7.608677e-04	ci right 8.482277e-04	k: 1318	n:1640000
KS ci ratio: 5.455434e-03	ci left: 2.387891e-01	ci right 2.400960e-01	k: 392685	n:1640000
DDX60L   1640000 perm   1481 sec   (1108 perm/sec)   p_kst 2.394421e-01   p_cons 8.036585e-04   p_joint 2.511585e-03

Joint ci ratio: 6.075894e-02	ci left: 2.439894e-03	ci right 2.593376e-03	k: 4151	n:1650000
Cons ci ratio: 1.075662e-01	ci left: 7.609743e-04	ci right 8.480660e-04	k: 1326	n:1650000
KS ci ratio: 5.438220e-03	ci left: 2.388350e-01	ci right 2.401380e-01	k: 395152	n:1650000
DDX60L   1650000 perm   1496 sec   (1103 perm/sec)   p_kst 2.394861e-01   p_cons 8.036364e-04   p_joint 2.515758e-03

Joint ci ratio: 6.056957e-02	ci left: 2.440621e-03	ci right 2.593653e-03	k: 4177	n:1660000
Cons ci ratio: 1.071230e-01	ci left: 7.628387e-04	ci right 8.497615e-04	k: 1337	n:1660000
KS ci ratio: 5.421716e-03	ci left: 2.388437e-01	ci right 2.401427e-01	k: 397558	n:1660000
DDX60L   1660000 perm   1512 sec   (1098 perm/sec)   p_kst 2.394928e-01   p_cons 8.054217e-04   p_joint 2.516265e-03

Joint ci ratio: 6.036038e-02	ci left: 2.443109e-03	ci right 2.595750e-03	k: 4206	n:1670000
Cons ci ratio: 1.070033e-01	ci left: 7.600191e-04	ci right 8.465176e-04	k: 1340	n:1670000
KS ci ratio: 5.405796e-03	ci left: 2.388230e-01	ci right 2.401181e-01	k: 399915	n:1670000
DDX60L   1670000 perm   1527 sec   (1094 perm/sec)   p_kst 2.394701e-01   p_cons 8.023952e-04   p_joint 2.518563e-03

Joint ci ratio: 6.081171e-02	ci left: 2.392219e-03	ci right 2.542838e-03	k: 4144	n:1680000
Cons ci ratio: 1.068442e-01	ci left: 7.578124e-04	ci right 8.439235e-04	k: 1344	n:1680000
KS ci ratio: 5.390015e-03	ci left: 2.388025e-01	ci right 2.400937e-01	k: 402272	n:1680000
DDX60L   1680000 perm   1542 sec   (1089 perm/sec)   p_kst 2.394476e-01   p_cons 8.000000e-04   p_joint 2.466667e-03

Joint ci ratio: 6.062915e-02	ci left: 2.392632e-03	ci right 2.542809e-03	k: 4169	n:1690000
Cons ci ratio: 1.064885e-01	ci left: 7.585117e-04	ci right 8.443973e-04	k: 1353	n:1690000
KS ci ratio: 5.373708e-03	ci left: 2.388272e-01	ci right 2.401146e-01	k: 404705	n:1690000
DDX60L   1690000 perm   1558 sec   (1085 perm/sec)   p_kst 2.394704e-01   p_cons 8.005917e-04   p_joint 2.466864e-03

Joint ci ratio: 6.048436e-02	ci left: 2.390144e-03	ci right 2.539794e-03	k: 4189	n:1700000
Cons ci ratio: 1.061753e-01	ci left: 7.586306e-04	ci right 8.442612e-04	k: 1361	n:1700000
KS ci ratio: 5.357678e-03	ci left: 2.388427e-01	ci right 2.401264e-01	k: 407123	n:1700000
DDX60L   1700000 perm   1574 sec   (1080 perm/sec)   p_kst 2.394841e-01   p_cons 8.005882e-04   p_joint 2.464118e-03

Joint ci ratio: 6.033342e-02	ci left: 2.388262e-03	ci right 2.537408e-03	k: 4210	n:1710000
Cons ci ratio: 1.059035e-01	ci left: 7.581791e-04	ci right 8.435261e-04	k: 1368	n:1710000
KS ci ratio: 5.341637e-03	ci left: 2.388687e-01	ci right 2.401486e-01	k: 409559	n:1710000
DDX60L   1710000 perm   1590 sec   (1076 perm/sec)   p_kst 2.395082e-01   p_cons 8.000000e-04   p_joint 2.461988e-03

Joint ci ratio: 6.096107e-02	ci left: 2.325133e-03	ci right 2.471900e-03	k: 4124	n:1720000
Cons ci ratio: 1.054805e-01	ci left: 7.599974e-04	ci right 8.451862e-04	k: 1379	n:1720000
KS ci ratio: 5.326112e-03	ci left: 2.388687e-01	ci right 2.401449e-01	k: 411951	n:1720000
DDX60L   1720000 perm   1605 sec   (1071 perm/sec)   p_kst 2.395064e-01   p_cons 8.017442e-04   p_joint 2.397674e-03

Joint ci ratio: 6.079184e-02	ci left: 2.324785e-03	ci right 2.471108e-03	k: 4147	n:1730000
Cons ci ratio: 1.051761e-01	ci left: 7.601069e-04	ci right 8.450468e-04	k: 1387	n:1730000
KS ci ratio: 5.310857e-03	ci left: 2.388596e-01	ci right 2.401321e-01	k: 414327	n:1730000
DDX60L   1730000 perm   1621 sec   (1067 perm/sec)   p_kst 2.394954e-01   p_cons 8.017341e-04   p_joint 2.397110e-03

Joint ci ratio: 6.064588e-02	ci left: 2.322744e-03	ci right 2.468575e-03	k: 4167	n:1740000
Cons ci ratio: 1.047992e-01	ci left: 7.613347e-04	ci right 8.460882e-04	k: 1397	n:1740000
KS ci ratio: 5.295574e-03	ci left: 2.388614e-01	ci right 2.401302e-01	k: 416722	n:1740000
DDX60L   1740000 perm   1638 sec   (1062 perm/sec)   p_kst 2.394954e-01   p_cons 8.028736e-04   p_joint 2.394828e-03

Joint ci ratio: 5.970593e-02	ci left: 2.383767e-03	ci right 2.531030e-03	k: 4299	n:1750000
Cons ci ratio: 1.044634e-01	ci left: 7.619925e-04	ci right 8.465308e-04	k: 1406	n:1750000
KS ci ratio: 5.280612e-03	ci left: 2.388501e-01	ci right 2.401153e-01	k: 419094	n:1750000
DDX60L   1750000 perm   1654 sec   (1058 perm/sec)   p_kst 2.394823e-01   p_cons 8.034286e-04   p_joint 2.456571e-03

Joint ci ratio: 5.681851e-02	ci left: 2.620511e-03	ci right 2.774314e-03	k: 4746	n:1760000
Cons ci ratio: 1.041677e-01	ci left: 7.620898e-04	ci right 8.463849e-04	k: 1414	n:1760000
KS ci ratio: 5.264947e-03	ci left: 2.388963e-01	ci right 2.401580e-01	k: 421567	n:1760000
DDX60L   1760000 perm   1670 sec   (1054 perm/sec)   p_kst 2.395267e-01   p_cons 8.034091e-04   p_joint 2.696591e-03

Joint ci ratio: 5.681295e-02	ci left: 2.606263e-03	ci right 2.759214e-03	k: 4747	n:1770000
Cons ci ratio: 1.039110e-01	ci left: 7.616361e-04	ci right 8.456608e-04	k: 1421	n:1770000
KS ci ratio: 5.249388e-03	ci left: 2.389442e-01	ci right 2.402024e-01	k: 424044	n:1770000
DDX60L   1770000 perm   1686 sec   (1050 perm/sec)   p_kst 2.395729e-01   p_cons 8.028249e-04   p_joint 2.681921e-03

Joint ci ratio: 5.663426e-02	ci left: 2.608236e-03	ci right 2.760805e-03	k: 4777	n:1780000
Cons ci ratio: 1.035475e-01	ci left: 7.628295e-04	ci right 8.466735e-04	k: 1431	n:1780000
KS ci ratio: 5.234773e-03	ci left: 2.389355e-01	ci right 2.401901e-01	k: 426421	n:1780000
DDX60L   1780000 perm   1702 sec   (1046 perm/sec)   p_kst 2.395624e-01   p_cons 8.039326e-04   p_joint 2.683708e-03

Joint ci ratio: 5.268957e-02	ci left: 3.001445e-03	ci right 3.164415e-03	k: 5517	n:1790000
Cons ci ratio: 1.034033e-01	ci left: 7.607447e-04	ci right 8.442360e-04	k: 1435	n:1790000
KS ci ratio: 5.220287e-03	ci left: 2.389263e-01	ci right 2.401774e-01	k: 428797	n:1790000
DDX60L   1790000 perm   1718 sec   (1042 perm/sec)   p_kst 2.395514e-01   p_cons 8.016760e-04   p_joint 3.082123e-03

Joint ci ratio: 5.273318e-02	ci left: 2.979835e-03	ci right 3.141770e-03	k: 5508	n:1800000
Cons ci ratio: 1.032597e-01	ci left: 7.586831e-04	ci right 8.418255e-04	k: 1439	n:1800000
KS ci ratio: 5.205834e-03	ci left: 2.389233e-01	ci right 2.401709e-01	k: 431184	n:1800000
DDX60L   1800000 perm   1735 sec   (1038 perm/sec)   p_kst 2.395467e-01   p_cons 7.994444e-04   p_joint 3.060000e-03

Joint ci ratio: 5.258543e-02	ci left: 2.980273e-03	ci right 3.141765e-03	k: 5539	n:1810000
Cons ci ratio: 1.029030e-01	ci left: 7.598739e-04	ci right 8.428417e-04	k: 1449	n:1810000
KS ci ratio: 5.191902e-03	ci left: 2.388922e-01	ci right 2.401363e-01	k: 433520	n:1810000
DDX60L   1810000 perm   1751 sec   (1034 perm/sec)   p_kst 2.395138e-01   p_cons 8.005525e-04   p_joint 3.060221e-03

Joint ci ratio: 5.249565e-02	ci left: 2.974200e-03	ci right 3.135080e-03	k: 5558	n:1820000
Cons ci ratio: 1.026203e-01	ci left: 7.599814e-04	ci right 8.427193e-04	k: 1457	n:1820000
KS ci ratio: 5.177503e-03	ci left: 2.389021e-01	ci right 2.401427e-01	k: 435930	n:1820000
DDX60L   1820000 perm   1768 sec   (1029 perm/sec)   p_kst 2.395220e-01   p_cons 8.005495e-04   p_joint 3.053846e-03

Joint ci ratio: 5.254352e-02	ci left: 2.952554e-03	ci right 3.112413e-03	k: 5548	n:1830000
Cons ci ratio: 1.022353e-01	ci left: 7.616855e-04	ci right 8.442791e-04	k: 1468	n:1830000
KS ci ratio: 5.163563e-03	ci left: 2.388878e-01	ci right 2.401250e-01	k: 438296	n:1830000
DDX60L   1830000 perm   1786 sec   (1025 perm/sec)   p_kst 2.395060e-01   p_cons 8.021858e-04   p_joint 3.031694e-03

Joint ci ratio: 5.237382e-02	ci left: 2.955817e-03	ci right 3.115319e-03	k: 5584	n:1840000
Cons ci ratio: 1.019926e-01	ci left: 7.612531e-04	ci right 8.435921e-04	k: 1475	n:1840000
KS ci ratio: 5.150351e-03	ci left: 2.388303e-01	ci right 2.400640e-01	k: 440582	n:1840000
DDX60L   1840000 perm   1802 sec   (1021 perm/sec)   p_kst 2.394467e-01   p_cons 8.016304e-04   p_joint 3.034783e-03

Joint ci ratio: 5.521291e-02	ci left: 2.642260e-03	ci right 2.792817e-03	k: 5026	n:1850000
Cons ci ratio: 1.017173e-01	ci left: 7.613524e-04	ci right 8.434666e-04	k: 1483	n:1850000
KS ci ratio: 5.136683e-03	ci left: 2.388128e-01	ci right 2.400432e-01	k: 442941	n:1850000
DDX60L   1850000 perm   1818 sec   (1018 perm/sec)   p_kst 2.394276e-01   p_cons 8.016216e-04   p_joint 2.716757e-03

Joint ci ratio: 5.504340e-02	ci left: 2.644491e-03	ci right 2.794698e-03	k: 5057	n:1860000
Cons ci ratio: 1.015806e-01	ci left: 7.593549e-04	ci right 8.411370e-04	k: 1487	n:1860000
KS ci ratio: 5.122404e-03	ci left: 2.388465e-01	ci right 2.400736e-01	k: 445395	n:1860000
DDX60L   1860000 perm   1834 sec   (1014 perm/sec)   p_kst 2.394597e-01   p_cons 7.994624e-04   p_joint 2.718817e-03

Joint ci ratio: 5.523576e-02	ci left: 2.611890e-03	ci right 2.760780e-03	k: 5022	n:1870000
Cons ci ratio: 1.011733e-01	ci left: 7.615486e-04	ci right 8.432187e-04	k: 1499	n:1870000
KS ci ratio: 5.108942e-03	ci left: 2.388302e-01	ci right 2.400540e-01	k: 447756	n:1870000
DDX60L   1870000 perm   1851 sec   (1010 perm/sec)   p_kst 2.394417e-01   p_cons 8.016043e-04   p_joint 2.685561e-03

Joint ci ratio: 5.509884e-02	ci left: 2.611111e-03	ci right 2.759576e-03	k: 5047	n:1880000
Cons ci ratio: 1.009381e-01	ci left: 7.611271e-04	ci right 8.425510e-04	k: 1506	n:1880000
KS ci ratio: 5.095503e-03	ci left: 2.388199e-01	ci right 2.400405e-01	k: 450128	n:1880000
DDX60L   1880000 perm   1867 sec   (1007 perm/sec)   p_kst 2.394298e-01   p_cons 8.010638e-04   p_joint 2.684574e-03

Joint ci ratio: 5.494664e-02	ci left: 2.611907e-03	ci right 2.759994e-03	k: 5075	n:1890000
Cons ci ratio: 1.006048e-01	ci left: 7.622577e-04	ci right 8.435173e-04	k: 1516	n:1890000
KS ci ratio: 5.081438e-03	ci left: 2.388621e-01	ci right 2.400795e-01	k: 452599	n:1890000
DDX60L   1890000 perm   1884 sec   (1003 perm/sec)   p_kst 2.394704e-01   p_cons 8.021164e-04   p_joint 2.685185e-03

Joint ci ratio: 5.522591e-02	ci left: 2.571686e-03	ci right 2.718258e-03	k: 5024	n:1900000
Cons ci ratio: 1.004065e-01	ci left: 7.613243e-04	ci right 8.423150e-04	k: 1522	n:1900000
KS ci ratio: 5.068178e-03	ci left: 2.388544e-01	ci right 2.400685e-01	k: 454976	n:1900000
DDX60L   1900000 perm   1902 sec   (999 perm/sec)   p_kst 2.394611e-01   p_cons 8.010526e-04   p_joint 2.644211e-03

Joint ci ratio: 5.510000e-02	ci left: 2.570097e-03	ci right 2.716234e-03	k: 5047	n:1910000
Cons ci ratio: 1.001111e-01	ci left: 7.619322e-04	ci right 8.427351e-04	k: 1531	n:1910000
KS ci ratio: 5.054941e-03	ci left: 2.388525e-01	ci right 2.400635e-01	k: 457364	n:1910000
DDX60L   1910000 perm   1919 sec   (995 perm/sec)   p_kst 2.394576e-01   p_cons 8.015707e-04   p_joint 2.642408e-03

Joint ci ratio: 5.519364e-02	ci left: 2.547979e-03	ci right 2.693112e-03	k: 5030	n:1920000
Cons ci ratio: 9.985076e-02	ci left: 7.620263e-04	ci right 8.426167e-04	k: 1539	n:1920000
KS ci ratio: 5.041923e-03	ci left: 2.388423e-01	ci right 2.400501e-01	k: 459736	n:1920000
DDX60L   1920000 perm   1936 sec   (992 perm/sec)   p_kst 2.394458e-01   p_cons 8.015625e-04   p_joint 2.619792e-03

Outputting figure to mutsig2_images.part000000000048/DDX60L.7_5269_1920000_0.23945_0.00080156_0.0026198.png
                gene_name: DDX60L
               theta_stop: 0.100 
                    nperm: 1920000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.00080 
      ci_cons_bounds_left: 0.00076 
     ci_cons_bounds_right: 0.00084 
                  p_joint: 0.0026 
     ci_joint_bounds_left: 0.0025 
    ci_joint_bounds_right: 0.0027 

Current progress: 5 percent done.
DCTN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.852468e-02	ci left: 3.852013e-01	ci right 4.044600e-01	k: 3948	n:10000
Cons ci ratio: 1.022198e-01	ci left: 1.216088e-01	ci right 1.348087e-01	k: 1281	n:10000
KS ci ratio: 3.549612e-02	ci left: 5.395849e-01	ci right 5.591863e-01	k: 5494	n:10000
DCTN1   10000 perm   2 sec   (5244 perm/sec)   p_kst 5.494000e-01   p_cons 1.281000e-01   p_joint 3.948000e-01

Joint ci ratio: 3.586884e-02	ci left: 3.671384e-01	ci right 3.805983e-01	k: 7477	n:20000
Cons ci ratio: 6.854230e-02	ci left: 1.357114e-01	ci right 1.453933e-01	k: 2810	n:20000
KS ci ratio: 2.519002e-02	ci left: 5.407205e-01	ci right 5.545656e-01	k: 10953	n:20000
DCTN1   20000 perm   4 sec   (4730 perm/sec)   p_kst 5.476500e-01   p_cons 1.405000e-01   p_joint 3.738500e-01

Outputting figure to mutsig2_images.part000000000048/DCTN1.6_3977_20000_0.54765_0.1405_0.37385.png
                gene_name: DCTN1
               theta_stop: 0.069 
                    nperm: 20000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.38 

Current progress: 7 percent done.
DCX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.591465e-02	ci left: 1.648463e-01	ci right 1.797451e-01	k: 1722	n:10000
Cons ci ratio: 1.977666e-01	ci left: 3.405205e-02	ci right 4.162024e-02	k: 377	n:10000
KS ci ratio: 7.039249e-02	ci left: 2.282979e-01	ci right 2.450558e-01	k: 2366	n:10000
DCX   10000 perm   2 sec   (5802 perm/sec)   p_kst 2.366000e-01   p_cons 3.770000e-02   p_joint 1.722000e-01

Joint ci ratio: 6.179443e-02	ci left: 1.622990e-01	ci right 1.726979e-01	k: 3349	n:20000
Cons ci ratio: 1.401345e-01	ci left: 3.500605e-02	ci right 4.032945e-02	k: 752	n:20000
KS ci ratio: 4.952198e-02	ci left: 2.326071e-01	ci right 2.444690e-01	k: 4770	n:20000
DCX   20000 perm   4 sec   (4980 perm/sec)   p_kst 2.385000e-01   p_cons 3.760000e-02   p_joint 1.674500e-01

Joint ci ratio: 5.058827e-02	ci left: 1.625312e-01	ci right 1.710001e-01	k: 5002	n:30000
Cons ci ratio: 1.144466e-01	ci left: 3.547563e-02	ci right 3.981450e-02	k: 1128	n:30000
KS ci ratio: 4.042167e-02	ci left: 2.338188e-01	ci right 2.434985e-01	k: 7159	n:30000
DCX   30000 perm   6 sec   (4837 perm/sec)   p_kst 2.386333e-01   p_cons 3.760000e-02   p_joint 1.667333e-01

Joint ci ratio: 5.327224e-02	ci left: 1.160398e-01	ci right 1.224155e-01	k: 4768	n:40000
Cons ci ratio: 9.841413e-02	ci left: 3.626945e-02	ci right 4.004798e-02	k: 1525	n:40000
KS ci ratio: 3.411865e-02	ci left: 2.438733e-01	ci right 2.523633e-01	k: 9924	n:40000
DCX   40000 perm   8 sec   (4717 perm/sec)   p_kst 2.481000e-01   p_cons 3.812500e-02   p_joint 1.192000e-01

Outputting figure to mutsig2_images.part000000000048/DCX.6_1369_40000_0.2481_0.038125_0.1192.png
                gene_name: DCX
               theta_stop: 0.098 
                    nperm: 40000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.038 
      ci_cons_bounds_left: 0.036 
     ci_cons_bounds_right: 0.040 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 10 percent done.
DDX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.402496e-02	ci left: 3.354805e-01	ci right 3.542099e-01	k: 3448	n:10000
Cons ci ratio: 8.603533e-02	ci left: 1.644533e-01	ci right 1.793384e-01	k: 1718	n:10000
KS ci ratio: 5.233511e-02	ci left: 3.498883e-01	ci right 3.687937e-01	k: 3593	n:10000
DDX1   10000 perm   2 sec   (5344 perm/sec)   p_kst 3.593000e-01   p_cons 1.718000e-01   p_joint 3.448000e-01

Outputting figure to mutsig2_images.part000000000048/DDX1.6_2327_10000_0.3593_0.1718_0.3448.png
                gene_name: DDX1
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 12 percent done.
DDHD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.232008e-02	ci left: 4.518913e-01	ci right 4.715310e-01	k: 4617	n:10000
Cons ci ratio: 4.462512e-03	ci left: 9.849077e-01	ci right 9.894019e-01	k: 9873	n:10000
KS ci ratio: 5.412073e-02	ci left: 3.346859e-01	ci right 3.534050e-01	k: 3440	n:10000
DDHD1   10000 perm   2 sec   (5391 perm/sec)   p_kst 3.440000e-01   p_cons 9.873000e-01   p_joint 4.617000e-01

Outputting figure to mutsig2_images.part000000000048/DDHD1.5_2780_10000_0.344_0.9873_0.4617.png
                gene_name: DDHD1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 14 percent done.
DDI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.796775e-02	ci left: 2.410427e-01	ci right 2.581034e-01	k: 2495	n:10000
Cons ci ratio: 1.450035e-01	ci left: 6.314223e-02	ci right 7.311115e-02	k: 680	n:10000
KS ci ratio: 3.030947e-02	ci left: 6.162299e-01	ci right 6.352968e-01	k: 6258	n:10000
DDI1   10000 perm   2 sec   (6024 perm/sec)   p_kst 6.258000e-01   p_cons 6.800000e-02   p_joint 2.495000e-01

Joint ci ratio: 4.416894e-02	ci left: 2.762674e-01	ci right 2.887959e-01	k: 5650	n:20000
Cons ci ratio: 9.506608e-02	ci left: 7.461336e-02	ci right 8.210977e-02	k: 1566	n:20000
KS ci ratio: 2.048898e-02	ci left: 6.399793e-01	ci right 6.532781e-01	k: 12933	n:20000
DDI1   20000 perm   4 sec   (5403 perm/sec)   p_kst 6.466500e-01   p_cons 7.830000e-02   p_joint 2.825000e-01

Outputting figure to mutsig2_images.part000000000048/DDI1.5_1195_20000_0.64665_0.0783_0.2825.png
                gene_name: DDI1
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.078 
      ci_cons_bounds_left: 0.075 
     ci_cons_bounds_right: 0.082 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 17 percent done.
DDX53
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.161556e-02	ci left: 3.562506e-01	ci right 3.752277e-01	k: 3657	n:10000
Cons ci ratio: 2.332572e-02	ci left: 7.297682e-01	ci right 7.470927e-01	k: 7385	n:10000
KS ci ratio: 8.908765e-02	ci left: 1.549259e-01	ci right 1.694715e-01	k: 1621	n:10000
DDX53   10000 perm   2 sec   (4682 perm/sec)   p_kst 1.621000e-01   p_cons 7.385000e-01   p_joint 3.657000e-01

Outputting figure to mutsig2_images.part000000000048/DDX53.5_1900_10000_0.1621_0.7385_0.3657.png
                gene_name: DDX53
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 19 percent done.
DDX59
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.158000e-02	ci left: 9.143035e-01	ci right 9.250505e-01	k: 9198	n:10000
Cons ci ratio: 2.000404e-02	ci left: 7.853299e-01	ci right 8.012989e-01	k: 7934	n:10000
KS ci ratio: 3.697613e-02	ci left: 5.192595e-01	ci right 5.389235e-01	k: 5291	n:10000
DDX59   10000 perm   2 sec   (5672 perm/sec)   p_kst 5.291000e-01   p_cons 7.934000e-01   p_joint 9.198000e-01

Outputting figure to mutsig2_images.part000000000048/DDX59.5_1888_10000_0.5291_0.7934_0.9198.png
                gene_name: DDX59
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.93 

Current progress: 21 percent done.
DEAF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.790536e-02	ci left: 8.198482e-01	ci right 8.347606e-01	k: 8274	n:10000
Cons ci ratio: 5.972766e-03	ci left: 9.742942e-01	ci right 9.802233e-01	k: 9774	n:10000
KS ci ratio: 3.115659e-02	ci left: 6.031711e-01	ci right 6.223632e-01	k: 6128	n:10000
DEAF1   10000 perm   2 sec   (5888 perm/sec)   p_kst 6.128000e-01   p_cons 9.774000e-01   p_joint 8.274000e-01

Outputting figure to mutsig2_images.part000000000048/DEAF1.5_1746_10000_0.6128_0.9774_0.8274.png
                gene_name: DEAF1
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 24 percent done.
DCT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.405475e-02	ci left: 4.320349e-01	ci right 4.515990e-01	k: 4418	n:10000
Cons ci ratio: 5.230103e-02	ci left: 3.501865e-01	ci right 3.690954e-01	k: 3596	n:10000
KS ci ratio: 4.594381e-02	ci left: 4.114968e-01	ci right 4.309491e-01	k: 4212	n:10000
DCT   10000 perm   2 sec   (5660 perm/sec)   p_kst 4.212000e-01   p_cons 3.596000e-01   p_joint 4.418000e-01

Outputting figure to mutsig2_images.part000000000048/DCT.4_1699_10000_0.4212_0.3596_0.4418.png
                gene_name: DCT
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 26 percent done.
DCUN1D1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.605704e-02	ci left: 4.103009e-01	ci right 4.297457e-01	k: 4200	n:10000
Cons ci ratio: 3.897529e-02	ci left: 4.929507e-01	ci right 5.126477e-01	k: 5028	n:10000
KS ci ratio: 7.637447e-02	ci left: 2.004751e-01	ci right 2.164950e-01	k: 2084	n:10000
DCUN1D1   10000 perm   2 sec   (6039 perm/sec)   p_kst 2.084000e-01   p_cons 5.028000e-01   p_joint 4.200000e-01

Outputting figure to mutsig2_images.part000000000048/DCUN1D1.4_808_10000_0.2084_0.5028_0.42.png
                gene_name: DCUN1D1
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 29 percent done.
DDC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.124744e-02	ci left: 9.186317e-01	ci right 9.291198e-01	k: 9240	n:10000
KS ci ratio: 1.757859e-02	ci left: 8.251362e-01	ci right 8.398695e-01	k: 8326	n:10000
DDC   10000 perm   2 sec   (6181 perm/sec)   p_kst 8.326000e-01   p_cons 9.240000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000048/DDC.4_1495_10000_0.8326_0.924_1.png
                gene_name: DDC
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 31 percent done.
DDHD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.052715e-02	ci left: 9.277156e-01	ci right 9.376305e-01	k: 9328	n:10000
KS ci ratio: 3.740117e-02	ci left: 5.135553e-01	ci right 5.332311e-01	k: 5234	n:10000
DDHD2   10000 perm   2 sec   (5796 perm/sec)   p_kst 5.234000e-01   p_cons 9.328000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000048/DDHD2.4_2262_10000_0.5234_0.9328_1.png
                gene_name: DDHD2
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 33 percent done.
DDR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.029456e-02	ci left: 2.880544e-01	ci right 3.060640e-01	k: 2970	n:10000
Cons ci ratio: 8.173326e-02	ci left: 1.793015e-01	ci right 1.946813e-01	k: 1869	n:10000
KS ci ratio: 2.899040e-02	ci left: 6.369381e-01	ci right 6.557766e-01	k: 6464	n:10000
DDR1   10000 perm   2 sec   (5463 perm/sec)   p_kst 6.464000e-01   p_cons 1.869000e-01   p_joint 2.970000e-01

Outputting figure to mutsig2_images.part000000000048/DDR1.4_2828_10000_0.6464_0.1869_0.297.png
                gene_name: DDR1
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 36 percent done.
DDX27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.716943e-02	ci left: 3.105631e-01	ci right 3.289420e-01	k: 3197	n:10000
Cons ci ratio: 9.901168e-03	ci left: 9.352693e-01	ci right 9.446723e-01	k: 9401	n:10000
KS ci ratio: 6.187607e-02	ci left: 2.774536e-01	ci right 2.952710e-01	k: 2863	n:10000
DDX27   10000 perm   2 sec   (5426 perm/sec)   p_kst 2.863000e-01   p_cons 9.401000e-01   p_joint 3.197000e-01

Outputting figure to mutsig2_images.part000000000048/DDX27.4_2475_10000_0.2863_0.9401_0.3197.png
                gene_name: DDX27
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 38 percent done.
DDX42
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.808936e-02	ci left: 6.513244e-01	ci right 6.699820e-01	k: 6607	n:10000
Cons ci ratio: 2.727293e-02	ci left: 6.645117e-01	ci right 6.829870e-01	k: 6738	n:10000
KS ci ratio: 4.096618e-02	ci left: 4.680674e-01	ci right 4.877455e-01	k: 4779	n:10000
DDX42   10000 perm   2 sec   (5291 perm/sec)   p_kst 4.779000e-01   p_cons 6.738000e-01   p_joint 6.607000e-01

Outputting figure to mutsig2_images.part000000000048/DDX42.4_2885_10000_0.4779_0.6738_0.6607.png
                gene_name: DDX42
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 40 percent done.
DDX46
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.437344e-02	ci left: 3.326001e-01	ci right 3.512920e-01	k: 3419	n:10000
Cons ci ratio: 2.408720e-02	ci left: 7.170425e-01	ci right 7.346258e-01	k: 7259	n:10000
KS ci ratio: 7.219193e-02	ci left: 2.194125e-01	ci right 2.359465e-01	k: 2276	n:10000
DDX46   10000 perm   2 sec   (5156 perm/sec)   p_kst 2.276000e-01   p_cons 7.259000e-01   p_joint 3.419000e-01

Outputting figure to mutsig2_images.part000000000048/DDX46.4_3188_10000_0.2276_0.7259_0.3419.png
                gene_name: DDX46
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 43 percent done.
DDX60
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.247168e-02	ci left: 2.735913e-01	ci right 2.913356e-01	k: 2824	n:10000
Cons ci ratio: 8.834118e-02	ci left: 1.571841e-01	ci right 1.718119e-01	k: 1644	n:10000
KS ci ratio: 5.300083e-02	ci left: 3.441241e-01	ci right 3.629613e-01	k: 3535	n:10000
DDX60   10000 perm   2 sec   (4790 perm/sec)   p_kst 3.535000e-01   p_cons 1.644000e-01   p_joint 2.824000e-01

Outputting figure to mutsig2_images.part000000000048/DDX60.4_5287_10000_0.3535_0.1644_0.2824.png
                gene_name: DDX60
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 45 percent done.
DCST2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.968641e-02	ci left: 7.906032e-01	ci right 8.064225e-01	k: 7986	n:10000
Cons ci ratio: 3.831063e-02	ci left: 5.015506e-01	ci right 5.212428e-01	k: 5114	n:10000
KS ci ratio: 3.064035e-02	ci left: 6.111060e-01	ci right 6.302237e-01	k: 6207	n:10000
DCST2   10000 perm   2 sec   (5834 perm/sec)   p_kst 6.207000e-01   p_cons 5.114000e-01   p_joint 7.986000e-01

Outputting figure to mutsig2_images.part000000000048/DCST2.3_2382_10000_0.6207_0.5114_0.7986.png
                gene_name: DCST2
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 48 percent done.
DDB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.518891e-02	ci left: 4.195704e-01	ci right 4.390708e-01	k: 4293	n:10000
Cons ci ratio: 2.732256e-02	ci left: 6.637061e-01	ci right 6.821931e-01	k: 6730	n:10000
KS ci ratio: 4.665763e-02	ci left: 4.040236e-01	ci right 4.234267e-01	k: 4137	n:10000
DDB1   10000 perm   2 sec   (5743 perm/sec)   p_kst 4.137000e-01   p_cons 6.730000e-01   p_joint 4.293000e-01

Outputting figure to mutsig2_images.part000000000048/DDB1.3_3531_10000_0.4137_0.673_0.4293.png
                gene_name: DDB1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 50 percent done.
DDB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.147915e-02	ci left: 5.982508e-01	ci right 6.174863e-01	k: 6079	n:10000
KS ci ratio: 2.783297e-02	ci left: 6.554508e-01	ci right 6.740531e-01	k: 6648	n:10000
DDB2   10000 perm   2 sec   (6372 perm/sec)   p_kst 6.648000e-01   p_cons 6.079000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000048/DDB2.3_1324_10000_0.6648_0.6079_1.png
                gene_name: DDB2
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 52 percent done.
DDR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.992472e-02	ci left: 7.866480e-01	ci right 8.025800e-01	k: 7947	n:10000
Cons ci ratio: 8.726408e-02	ci left: 1.605234e-01	ci right 1.752706e-01	k: 1678	n:10000
KS ci ratio: 3.798239e-02	ci left: 5.058516e-01	ci right 5.255392e-01	k: 5157	n:10000
DDR2   10000 perm   2 sec   (6137 perm/sec)   p_kst 5.157000e-01   p_cons 1.678000e-01   p_joint 7.947000e-01

Outputting figure to mutsig2_images.part000000000048/DDR2.3_2632_10000_0.5157_0.1678_0.7947.png
                gene_name: DDR2
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 55 percent done.
DDX23
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.239779e-02	ci left: 2.184255e-01	ci right 2.349340e-01	k: 2266	n:10000
Cons ci ratio: 3.460197e-02	ci left: 5.522089e-01	ci right 5.717549e-01	k: 5620	n:10000
KS ci ratio: 1.183862e-01	ci left: 9.292171e-02	ci right 1.047132e-01	k: 987	n:10000
DDX23   10000 perm   2 sec   (5641 perm/sec)   p_kst 9.870000e-02   p_cons 5.620000e-01   p_joint 2.266000e-01

Joint ci ratio: 7.106269e-02	ci left: 1.273376e-01	ci right 1.367697e-01	k: 2640	n:20000
Cons ci ratio: 2.427063e-02	ci left: 5.590969e-01	ci right 5.728839e-01	k: 11320	n:20000
KS ci ratio: 8.505721e-02	ci left: 9.190214e-02	ci right 1.001157e-01	k: 1919	n:20000
DDX23   20000 perm   4 sec   (5039 perm/sec)   p_kst 9.595000e-02   p_cons 5.660000e-01   p_joint 1.320000e-01

Outputting figure to mutsig2_images.part000000000048/DDX23.3_2527_20000_0.09595_0.566_0.132.png
                gene_name: DDX23
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.096 
        ci_ks_bounds_left: 0.092 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 57 percent done.
DDX3X
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.778521e-02	ci left: 5.084526e-01	ci right 5.281367e-01	k: 5183	n:10000
Cons ci ratio: 5.626217e-02	ci left: 3.175092e-01	ci right 3.359918e-01	k: 3267	n:10000
KS ci ratio: 5.418072e-02	ci left: 3.341893e-01	ci right 3.529019e-01	k: 3435	n:10000
DDX3X   10000 perm   2 sec   (6024 perm/sec)   p_kst 3.435000e-01   p_cons 3.267000e-01   p_joint 5.183000e-01

Outputting figure to mutsig2_images.part000000000048/DDX3X.3_2057_10000_0.3435_0.3267_0.5183.png
                gene_name: DDX3X
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 60 percent done.
DDX54
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.721716e-03	ci left: 9.937548e-01	ci right 9.965446e-01	k: 9953	n:10000
KS ci ratio: 1.534259e-02	ci left: 8.603917e-01	ci right 8.737937e-01	k: 8672	n:10000
DDX54   10000 perm   2 sec   (5629 perm/sec)   p_kst 8.672000e-01   p_cons 9.953000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000048/DDX54.3_2729_10000_0.8672_0.9953_1.png
                gene_name: DDX54
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 1.00 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 1.00 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
DECR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.562438e-02	ci left: 6.915160e-01	ci right 7.095671e-01	k: 7006	n:10000
Cons ci ratio: 4.710281e-02	ci left: 3.994411e-01	ci right 4.188118e-01	k: 4091	n:10000
KS ci ratio: 5.433722e-02	ci left: 3.328981e-01	ci right 3.515939e-01	k: 3422	n:10000
DECR2   10000 perm   2 sec   (6461 perm/sec)   p_kst 3.422000e-01   p_cons 4.091000e-01   p_joint 7.006000e-01

Outputting figure to mutsig2_images.part000000000048/DECR2.3_911_10000_0.3422_0.4091_0.7006.png
                gene_name: DECR2
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 64 percent done.
DEF6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.321963e-02	ci left: 2.688388e-01	ci right 2.864909e-01	k: 2776	n:10000
Cons ci ratio: 2.869303e-02	ci left: 6.416654e-01	ci right 6.604465e-01	k: 6511	n:10000
KS ci ratio: 9.222915e-02	ci left: 1.458981e-01	ci right 1.601047e-01	k: 1529	n:10000
DEF6   10000 perm   2 sec   (5989 perm/sec)   p_kst 1.529000e-01   p_cons 6.511000e-01   p_joint 2.776000e-01

Outputting figure to mutsig2_images.part000000000048/DEF6.3_1940_10000_0.1529_0.6511_0.2776.png
                gene_name: DEF6
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 67 percent done.
DCPS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.075105e-02	ci left: 6.093982e-01	ci right 6.285324e-01	k: 6190	n:10000
Cons ci ratio: 5.047820e-02	ci left: 3.665931e-01	ci right 3.856792e-01	k: 3761	n:10000
KS ci ratio: 4.197272e-02	ci left: 4.559843e-01	ci right 4.756356e-01	k: 4658	n:10000
DCPS   10000 perm   1 sec   (7011 perm/sec)   p_kst 4.658000e-01   p_cons 3.761000e-01   p_joint 6.190000e-01

Outputting figure to mutsig2_images.part000000000048/DCPS.2_1038_10000_0.4658_0.3761_0.619.png
                gene_name: DCPS
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 69 percent done.
DCST1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.358711e-02	ci left: 5.668447e-01	ci right 5.863106e-01	k: 5766	n:10000
KS ci ratio: 2.866147e-02	ci left: 6.421684e-01	ci right 6.609432e-01	k: 6516	n:10000
DCST1   10000 perm   2 sec   (6171 perm/sec)   p_kst 6.516000e-01   p_cons 5.766000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000048/DCST1.2_2185_10000_0.6516_0.5766_1.png
                gene_name: DCST1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
DDI2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.601149e-02	ci left: 2.520172e-01	ci right 2.693224e-01	k: 2606	n:10000
Cons ci ratio: 3.740866e-02	ci left: 5.134552e-01	ci right 5.331312e-01	k: 5233	n:10000
KS ci ratio: 9.305635e-02	ci left: 1.436425e-01	ci right 1.577616e-01	k: 1506	n:10000
DDI2   10000 perm   2 sec   (6606 perm/sec)   p_kst 1.506000e-01   p_cons 5.233000e-01   p_joint 2.606000e-01

Outputting figure to mutsig2_images.part000000000048/DDI2.2_1236_10000_0.1506_0.5233_0.2606.png
                gene_name: DDI2
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 74 percent done.
DDIT4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.675392e-02	ci left: 4.030273e-01	ci right 4.224236e-01	k: 4127	n:10000
KS ci ratio: 5.589344e-02	ci left: 3.203876e-01	ci right 3.389118e-01	k: 3296	n:10000
DDIT4   10000 perm   1 sec   (6987 perm/sec)   p_kst 3.296000e-01   p_cons 4.127000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000048/DDIT4.2_707_10000_0.3296_0.4127_1.png
                gene_name: DDIT4
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
DDIT4L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.137775e-01	ci left: 1.000319e-01	ci right 1.121987e-01	k: 1060	n:10000
KS ci ratio: 5.019975e-02	ci left: 3.691794e-01	ci right 3.882913e-01	k: 3787	n:10000
DDIT4L   10000 perm   1 sec   (7034 perm/sec)   p_kst 3.787000e-01   p_cons 1.060000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 7.970010e-02	ci left: 1.035833e-01	ci right 1.122311e-01	k: 2157	n:20000
KS ci ratio: 3.581910e-02	ci left: 3.677860e-01	ci right 3.812505e-01	k: 7490	n:20000
DDIT4L   20000 perm   3 sec   (5736 perm/sec)   p_kst 3.745000e-01   p_cons 1.078500e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000048/DDIT4L.2_590_20000_0.3745_0.10785_1.png
                gene_name: DDIT4L
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
DDO
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.705912e-02	ci left: 8.334802e-01	ci right 8.479208e-01	k: 8408	n:10000
KS ci ratio: 6.954595e-02	ci left: 2.326438e-01	ci right 2.495073e-01	k: 2410	n:10000
DDO   10000 perm   1 sec   (6758 perm/sec)   p_kst 2.410000e-01   p_cons 8.408000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000048/DDO.2_1130_10000_0.241_0.8408_1.png
                gene_name: DDO
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
DDX10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.046065e-02	ci left: 7.777276e-01	ci right 7.939056e-01	k: 7859	n:10000
Cons ci ratio: 1.153651e-01	ci left: 9.749841e-02	ci right 1.095337e-01	k: 1034	n:10000
KS ci ratio: 1.600840e-02	ci left: 8.500867e-01	ci right 8.639046e-01	k: 8571	n:10000
DDX10   10000 perm   2 sec   (5936 perm/sec)   p_kst 8.571000e-01   p_cons 1.034000e-01   p_joint 7.859000e-01

Joint ci ratio: 4.351889e-02	ci left: 2.822767e-01	ci right 2.948848e-01	k: 5771	n:20000
Cons ci ratio: 8.122727e-02	ci left: 1.000476e-01	ci right 1.085678e-01	k: 2085	n:20000
KS ci ratio: 1.141107e-02	ci left: 8.501450e-01	ci right 8.599515e-01	k: 17102	n:20000
DDX10   20000 perm   4 sec   (5269 perm/sec)   p_kst 8.551000e-01   p_cons 1.042500e-01   p_joint 2.885500e-01

Outputting figure to mutsig2_images.part000000000048/DDX10.2_2700_20000_0.8551_0.10425_0.28855.png
                gene_name: DDX10
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 83 percent done.
DDX18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.845539e-02	ci left: 3.010409e-01	ci right 3.192698e-01	k: 3101	n:10000
Cons ci ratio: 1.014468e-02	ci left: 9.323699e-01	ci right 9.419735e-01	k: 9373	n:10000
KS ci ratio: 1.073223e-01	ci left: 1.113483e-01	ci right 1.240753e-01	k: 1176	n:10000
DDX18   10000 perm   2 sec   (6129 perm/sec)   p_kst 1.176000e-01   p_cons 9.373000e-01   p_joint 3.101000e-01

Joint ci ratio: 2.414244e-02	ci left: 5.617015e-01	ci right 5.754786e-01	k: 11372	n:20000
Cons ci ratio: 7.574420e-03	ci left: 9.269388e-01	ci right 9.340354e-01	k: 18611	n:20000
KS ci ratio: 7.509648e-02	ci left: 1.153793e-01	ci right 1.244316e-01	k: 2397	n:20000
DDX18   20000 perm   4 sec   (5462 perm/sec)   p_kst 1.198500e-01   p_cons 9.305500e-01   p_joint 5.686000e-01

Outputting figure to mutsig2_images.part000000000048/DDX18.2_2069_20000_0.11985_0.93055_0.5686.png
                gene_name: DDX18
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 86 percent done.
DDX28
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.167809e-02	ci left: 7.573729e-01	ci right 7.740721e-01	k: 7658	n:10000
KS ci ratio: 1.000608e-02	ci left: 9.340264e-01	ci right 9.435160e-01	k: 9389	n:10000
DDX28   10000 perm   2 sec   (6457 perm/sec)   p_kst 9.389000e-01   p_cons 7.658000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000048/DDX28.2_1627_10000_0.9389_0.7658_1.png
                gene_name: DDX28
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
DDX4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.310533e-02	ci left: 3.432297e-01	ci right 3.620562e-01	k: 3526	n:10000
Cons ci ratio: 7.132045e-02	ci left: 2.236571e-01	ci right 2.402993e-01	k: 2319	n:10000
KS ci ratio: 1.606061e-02	ci left: 8.492710e-01	ci right 8.631208e-01	k: 8563	n:10000
DDX4   10000 perm   2 sec   (6235 perm/sec)   p_kst 8.563000e-01   p_cons 2.319000e-01   p_joint 3.526000e-01

Outputting figure to mutsig2_images.part000000000048/DDX4.2_2300_10000_0.8563_0.2319_0.3526.png
                gene_name: DDX4
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 90 percent done.
DDX41
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.465614e-02	ci left: 8.708117e-01	ci right 8.837677e-01	k: 8774	n:10000
KS ci ratio: 1.478520e-02	ci left: 8.688696e-01	ci right 8.819108e-01	k: 8755	n:10000
DDX41   10000 perm   2 sec   (6568 perm/sec)   p_kst 8.755000e-01   p_cons 8.774000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000048/DDX41.2_1937_10000_0.8755_0.8774_1.png
                gene_name: DDX41
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
DDX58
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.435966e-02	ci left: 7.124997e-01	ci right 7.301712e-01	k: 7214	n:10000
KS ci ratio: 3.279574e-02	ci left: 5.784793e-01	ci right 5.978693e-01	k: 5882	n:10000
DDX58   10000 perm   2 sec   (6038 perm/sec)   p_kst 5.882000e-01   p_cons 7.214000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000048/DDX58.2_2850_10000_0.5882_0.7214_1.png
                gene_name: DDX58
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
DEFA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.057425e-02	ci left: 4.728623e-01	ci right 4.925478e-01	k: 4827	n:10000
Cons ci ratio: 1.715456e-02	ci left: 8.319533e-01	ci right 8.464485e-01	k: 8393	n:10000
KS ci ratio: 4.920140e-02	ci left: 3.786320e-01	ci right 3.978331e-01	k: 3882	n:10000
DEFA4   10000 perm   1 sec   (7443 perm/sec)   p_kst 3.882000e-01   p_cons 8.393000e-01   p_joint 4.827000e-01

Outputting figure to mutsig2_images.part000000000048/DEFA4.2_302_10000_0.3882_0.8393_0.4827.png
                gene_name: DEFA4
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 98 percent done.
DEFA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.432366e-02	ci left: 4.290429e-01	ci right 4.485928e-01	k: 4388	n:10000
Cons ci ratio: 2.645157e-02	ci left: 6.779086e-01	ci right 6.961823e-01	k: 6871	n:10000
KS ci ratio: 8.735789e-02	ci left: 1.602287e-01	ci right 1.749655e-01	k: 1675	n:10000
DEFA5   10000 perm   1 sec   (7164 perm/sec)   p_kst 1.675000e-01   p_cons 6.871000e-01   p_joint 4.388000e-01

Outputting figure to mutsig2_images.part000000000048/DEFA5.2_293_10000_0.1675_0.6871_0.4388.png
                gene_name: DEFA5
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000048
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 48 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1728>
Subject: Job 8004009: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1728>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000049> was used as the working directory.
Started at Sun Nov 11 15:05:09 2012
Results reported at Sun Nov 11 15:13:15 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000049.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000049.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 49  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000049.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    438.34 sec.
    Max Memory :      4811 MB
    Max Swap   :      7100 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
49
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 49
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 49: processing genes 4344 - 4433
Calculating significance of each gene.
Using projection method.
4344	DEFA6	1
4345	DEFB1	8.372267e-02
4346	DEFB104A	1
4347	DEFB104B	1
4348	DEFB106A	1
4349	DEFB106B	1
4350	DEFB108B	1
4351	DEFB110	9.580225e-03
4352	DEFB112	2.474505e-03
4353	DEFB113	1
4354	DEFB114	1.254293e-01
4355	DEFB115	1.811522e-01
4356	DEFB116	6.333484e-02
4357	DEFB118	8.334297e-02
4358	DEFB119	1
4359	DEFB121	1
4360	DEFB123	6.452069e-02
4361	DEFB124	1
4362	DEFB125	4.590823e-01
4363	DEFB126	1
4364	DEFB127	1.619885e-01
4365	DEFB128	3.113669e-01
4366	DEFB129	1
4367	DEFB131	1.637789e-02
4368	DEFB132	1
4369	DEFB134	1
4370	DEFB135	1
4371	DEFB136	1.303377e-01
4372	DEFB4A	1
4373	DEGS1	5.735040e-01
4374	DEGS2	1
4375	DEK	1
4376	DEM1	4.007501e-01
4377	DENND1A	9.420336e-01
4378	DENND1B	7.384591e-02
4379	DENND1C	8.756221e-01
4380	DENND2A	1.317279e-01
4381	DENND2C	8.767592e-01
4382	DENND2D	5.516784e-01
4383	DENND3	8.465292e-01
4384	DENND4A	9.251140e-01
4385	DENND4B	9.519601e-01
4386	DENND4C	1
4387	DENND5A	9.938476e-01
4388	DENND5B	8.218562e-01
4389	DENR	1
4390	DEPDC1	1
4391	DEPDC1B	4.912262e-01
4392	DEPDC4	3.789447e-01
4393	DEPDC5	9.958926e-01
4394	DEPDC6	4.137924e-01
4395	DEPDC7	6.655167e-01
4396	DERA	5.318976e-01
4397	DERL1	1
4398	DERL2	1
4399	DERL3	1
4400	DES	1
4401	DET1	1.044879e-01
4402	DEXI	1
4403	DFFA	1
4404	DFFB	3.101417e-01
4405	DFNA5	8.083173e-01
4406	DFNB31	7.374395e-01
4407	DFNB59	7.101513e-01
4408	DGAT1	7.718730e-01
4409	DGAT2	2.927452e-01
4410	DGAT2L6	2.421812e-01
4411	DGCR14	1
4412	DGCR2	1
4413	DGCR6	2.939575e-01
4414	DGCR6L	1
4415	DGCR8	7.086508e-01
4416	DGKA	6.154588e-01
4417	DGKB	1
4418	DGKD	9.408417e-01
4419	DGKE	2.149227e-01
4420	DGKG	8.951669e-01
4421	DGKH	1
4422	DGKI	7.642307e-02
4423	DGKK	8.893945e-01
4424	DGKQ	8.199801e-01
4425	DGKZ	4.818884e-01
4426	DGUOK	1
4427	DHCR24	1
4428	DHCR7	3.550684e-01
4429	DHDDS	1
4430	DHDH	1
4431	DHDPSL	5.888207e-01
4432	DHFR	1
4433	DHFRL1	2.795687e-01
Done

Running MutSig 2:
Scatter job 49: processing genes 4344 - 4433
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
DGKI
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.907414e-02	ci left: 2.351136e-01	ci right 2.520360e-01	k: 2435	n:10000
Cons ci ratio: 1.087408e-01	ci left: 1.087125e-01	ci right 1.213128e-01	k: 1149	n:10000
KS ci ratio: 5.838717e-02	ci left: 3.015367e-01	ci right 3.197737e-01	k: 3106	n:10000
DGKI   10000 perm   2 sec   (5322 perm/sec)   p_kst 3.106000e-01   p_cons 1.149000e-01   p_joint 2.435000e-01

Joint ci ratio: 5.339142e-02	ci left: 2.066002e-01	ci right 2.179836e-01	k: 4245	n:20000
Cons ci ratio: 7.866204e-02	ci left: 1.060886e-01	ci right 1.148250e-01	k: 2208	n:20000
KS ci ratio: 4.262465e-02	ci left: 2.908212e-01	ci right 3.035378e-01	k: 5943	n:20000
DGKI   20000 perm   6 sec   (3437 perm/sec)   p_kst 2.971500e-01   p_cons 1.104000e-01   p_joint 2.122500e-01

Outputting figure to mutsig2_images.part000000000049/DGKI.13_3334_20000_0.29715_0.1104_0.21225.png
                gene_name: DGKI
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 3 percent done.
DGKK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.484027e-02	ci left: 4.233590e-01	ci right 4.428800e-01	k: 4331	n:10000
Cons ci ratio: 1.274153e-02	ci left: 8.985712e-01	ci right 9.101920e-01	k: 9045	n:10000
KS ci ratio: 6.447185e-02	ci left: 2.611186e-01	ci right 2.786156e-01	k: 2698	n:10000
DGKK   10000 perm   2 sec   (4757 perm/sec)   p_kst 2.698000e-01   p_cons 9.045000e-01   p_joint 4.331000e-01

Outputting figure to mutsig2_images.part000000000049/DGKK.9_3927_10000_0.2698_0.9045_0.4331.png
                gene_name: DGKK
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 5 percent done.
DENND1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.719376e-02	ci left: 1.970258e-01	ci right 2.129464e-01	k: 2049	n:10000
Cons ci ratio: 1.212799e-02	ci left: 9.069966e-01	ci right 9.181617e-01	k: 9127	n:10000
KS ci ratio: 1.303765e-01	ci left: 7.747081e-02	ci right 8.837361e-02	k: 828	n:10000
DENND1B   10000 perm   2 sec   (5480 perm/sec)   p_kst 8.280000e-02   p_cons 9.127000e-01   p_joint 2.049000e-01

Joint ci ratio: 6.279915e-02	ci left: 1.579052e-01	ci right 1.681930e-01	k: 3260	n:20000
Cons ci ratio: 8.718620e-03	ci left: 9.059490e-01	ci right 9.139314e-01	k: 18200	n:20000
KS ci ratio: 9.044839e-02	ci left: 8.195393e-02	ci right 8.976696e-02	k: 1716	n:20000
DENND1B   20000 perm   4 sec   (5115 perm/sec)   p_kst 8.580000e-02   p_cons 9.100000e-01   p_joint 1.630000e-01

Outputting figure to mutsig2_images.part000000000049/DENND1B.7_2461_20000_0.0858_0.91_0.163.png
                gene_name: DENND1B
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.086 
        ci_ks_bounds_left: 0.082 
       ci_ks_bounds_right: 0.090 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 8 percent done.
DENND2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.101545e-02	ci left: 4.674681e-01	ci right 4.871451e-01	k: 4773	n:10000
Cons ci ratio: 4.435967e-02	ci left: 4.286440e-01	ci right 4.481919e-01	k: 4384	n:10000
KS ci ratio: 6.138026e-02	ci left: 2.807224e-01	ci right 2.986003e-01	k: 2896	n:10000
DENND2A   10000 perm   2 sec   (5714 perm/sec)   p_kst 2.896000e-01   p_cons 4.384000e-01   p_joint 4.773000e-01

Outputting figure to mutsig2_images.part000000000049/DENND2A.7_3102_10000_0.2896_0.4384_0.4773.png
                gene_name: DENND2A
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 11 percent done.
DEPDC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.872833e-02	ci left: 3.832104e-01	ci right 4.024520e-01	k: 3928	n:10000
Cons ci ratio: 6.201258e-02	ci left: 2.765622e-01	ci right 2.943629e-01	k: 2854	n:10000
KS ci ratio: 5.819690e-02	ci left: 3.029251e-01	ci right 3.211845e-01	k: 3120	n:10000
DEPDC5   10000 perm   2 sec   (5398 perm/sec)   p_kst 3.120000e-01   p_cons 2.854000e-01   p_joint 3.928000e-01

Outputting figure to mutsig2_images.part000000000049/DEPDC5.7_4971_10000_0.312_0.2854_0.3928.png
                gene_name: DEPDC5
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 13 percent done.
DGKD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.462640e-02	ci left: 7.080589e-01	ci right 7.258146e-01	k: 7170	n:10000
Cons ci ratio: 5.972766e-03	ci left: 9.742942e-01	ci right 9.802233e-01	k: 9774	n:10000
KS ci ratio: 4.570908e-02	ci left: 4.139884e-01	ci right 4.334561e-01	k: 4237	n:10000
DGKD   10000 perm   2 sec   (5160 perm/sec)   p_kst 4.237000e-01   p_cons 9.774000e-01   p_joint 7.170000e-01

Outputting figure to mutsig2_images.part000000000049/DGKD.6_3789_10000_0.4237_0.9774_0.717.png
                gene_name: DGKD
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 16 percent done.
DENND1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.710413e-01	ci left: 4.561810e-02	ci right 5.424649e-02	k: 498	n:10000
Cons ci ratio: 5.259752e-02	ci left: 3.476023e-01	ci right 3.664811e-01	k: 3570	n:10000
KS ci ratio: 2.458026e-01	ci left: 2.174701e-02	ci right 2.793403e-02	k: 247	n:10000
DENND1A   10000 perm   2 sec   (5884 perm/sec)   p_kst 2.470000e-02   p_cons 3.570000e-01   p_joint 4.980000e-02

Joint ci ratio: 1.387052e-01	ci left: 3.573081e-02	ci right 4.110445e-02	k: 767	n:20000
Cons ci ratio: 3.818024e-02	ci left: 3.385093e-01	ci right 3.517357e-01	k: 6902	n:20000
KS ci ratio: 1.820756e-01	ci left: 2.058483e-02	ci right 2.475554e-02	k: 452	n:20000
DENND1A   20000 perm   4 sec   (5319 perm/sec)   p_kst 2.260000e-02   p_cons 3.451000e-01   p_joint 3.835000e-02

Joint ci ratio: 1.056181e-01	ci left: 4.157680e-02	ci right 4.624538e-02	k: 1316	n:30000
Cons ci ratio: 3.115908e-02	ci left: 3.399514e-01	ci right 3.507452e-01	k: 10360	n:30000
KS ci ratio: 1.497398e-01	ci left: 2.065885e-02	ci right 2.403454e-02	k: 669	n:30000
DENND1A   30000 perm   6 sec   (5089 perm/sec)   p_kst 2.230000e-02   p_cons 3.453333e-01   p_joint 4.386667e-02

Joint ci ratio: 7.305237e-02	ci left: 6.469170e-02	ci right 6.962137e-02	k: 2685	n:40000
Cons ci ratio: 2.642802e-02	ci left: 3.501344e-01	ci right 3.595367e-01	k: 14193	n:40000
KS ci ratio: 1.298525e-01	ci left: 2.082683e-02	ci right 2.374309e-02	k: 890	n:40000
DENND1A   40000 perm   8 sec   (4920 perm/sec)   p_kst 2.225000e-02   p_cons 3.548250e-01   p_joint 6.712500e-02

Joint ci ratio: 7.317430e-02	ci left: 5.229034e-02	ci right 5.628161e-02	k: 2713	n:50000
Cons ci ratio: 2.364981e-02	ci left: 3.504053e-01	ci right 3.588116e-01	k: 17730	n:50000
KS ci ratio: 1.160773e-01	ci left: 2.100411e-02	ci right 2.361176e-02	k: 1114	n:50000
DENND1A   50000 perm   10 sec   (4801 perm/sec)   p_kst 2.228000e-02   p_cons 3.546000e-01   p_joint 5.426000e-02

Joint ci ratio: 7.083163e-02	ci left: 4.684381e-02	ci right 5.030003e-02	k: 2913	n:60000
Cons ci ratio: 2.205961e-02	ci left: 3.409961e-01	ci right 3.486189e-01	k: 20688	n:60000
KS ci ratio: 1.052817e-01	ci left: 2.139310e-02	ci right 2.378672e-02	k: 1354	n:60000
DENND1A   60000 perm   13 sec   (4691 perm/sec)   p_kst 2.256667e-02   p_cons 3.448000e-01   p_joint 4.855000e-02

Joint ci ratio: 5.557519e-02	ci left: 6.451002e-02	ci right 6.821174e-02	k: 4644	n:70000
Cons ci ratio: 2.010203e-02	ci left: 3.484611e-01	ci right 3.555512e-01	k: 24640	n:70000
KS ci ratio: 9.239128e-02	ci left: 2.391186e-02	ci right 2.624202e-02	k: 1754	n:70000
DENND1A   70000 perm   15 sec   (4597 perm/sec)   p_kst 2.505714e-02   p_cons 3.520000e-01   p_joint 6.634286e-02

Outputting figure to mutsig2_images.part000000000049/DENND1A.5_3225_70000_0.025057_0.352_0.066343.png
                gene_name: DENND1A
               theta_stop: 0.092 
                    nperm: 70000 
                     p_ks: 0.025 
        ci_ks_bounds_left: 0.024 
       ci_ks_bounds_right: 0.026 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.066 
     ci_joint_bounds_left: 0.065 
    ci_joint_bounds_right: 0.068 

Current progress: 18 percent done.
DET1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.213094e-02	ci left: 7.497846e-01	ci right 7.666647e-01	k: 7583	n:10000
Cons ci ratio: 9.553251e-02	ci left: 1.371732e-01	ci right 1.510349e-01	k: 1440	n:10000
KS ci ratio: 2.431726e-02	ci left: 7.132062e-01	ci right 7.308642e-01	k: 7221	n:10000
DET1   10000 perm   2 sec   (6558 perm/sec)   p_kst 7.221000e-01   p_cons 1.440000e-01   p_joint 7.583000e-01

Outputting figure to mutsig2_images.part000000000049/DET1.5_1706_10000_0.7221_0.144_0.7583.png
                gene_name: DET1
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 21 percent done.
DGKB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.802117e-02	ci left: 1.581661e-01	ci right 1.728293e-01	k: 1654	n:10000
Cons ci ratio: 5.323349e-02	ci left: 3.421367e-01	ci right 3.609498e-01	k: 3515	n:10000
KS ci ratio: 1.196672e-01	ci left: 9.107270e-02	ci right 1.027633e-01	k: 968	n:10000
DGKB   10000 perm   2 sec   (5657 perm/sec)   p_kst 9.680000e-02   p_cons 3.515000e-01   p_joint 1.654000e-01

Joint ci ratio: 5.713816e-02	ci left: 1.850285e-01	ci right 1.959617e-01	k: 3809	n:20000
Cons ci ratio: 3.769954e-02	ci left: 3.442330e-01	ci right 3.575103e-01	k: 7017	n:20000
KS ci ratio: 8.373686e-02	ci left: 9.459997e-02	ci right 1.029171e-01	k: 1974	n:20000
DGKB   20000 perm   4 sec   (5019 perm/sec)   p_kst 9.870000e-02   p_cons 3.508500e-01   p_joint 1.904500e-01

Outputting figure to mutsig2_images.part000000000049/DGKB.5_2530_20000_0.0987_0.35085_0.19045.png
                gene_name: DGKB
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.099 
        ci_ks_bounds_left: 0.095 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 24 percent done.
DENND4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.686029e-02	ci left: 1.618004e-01	ci right 1.765928e-01	k: 1691	n:10000
Cons ci ratio: 3.522458e-02	ci left: 5.433915e-01	ci right 5.629775e-01	k: 5532	n:10000
KS ci ratio: 1.364833e-01	ci left: 7.097701e-02	ci right 8.147145e-02	k: 761	n:10000
DENND4A   10000 perm   2 sec   (5110 perm/sec)   p_kst 7.610000e-02   p_cons 5.532000e-01   p_joint 1.691000e-01

Joint ci ratio: 6.943580e-02	ci left: 1.326567e-01	ci right 1.422490e-01	k: 2748	n:20000
Cons ci ratio: 2.454095e-02	ci left: 5.536381e-01	ci right 5.674443e-01	k: 11211	n:20000
KS ci ratio: 9.943628e-02	ci left: 6.850386e-02	ci right 7.572114e-02	k: 1441	n:20000
DENND4A   20000 perm   4 sec   (4594 perm/sec)   p_kst 7.205000e-02   p_cons 5.605500e-01   p_joint 1.374000e-01

Outputting figure to mutsig2_images.part000000000049/DENND4A.4_5845_20000_0.07205_0.56055_0.1374.png
                gene_name: DENND4A
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.076 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 26 percent done.
DGKE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.461527e-02	ci left: 8.714250e-01	ci right 8.843539e-01	k: 8780	n:10000
KS ci ratio: 3.160472e-02	ci left: 5.963432e-01	ci right 6.155950e-01	k: 6060	n:10000
DGKE   10000 perm   2 sec   (6509 perm/sec)   p_kst 6.060000e-01   p_cons 8.780000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000049/DGKE.4_1748_10000_0.606_0.878_1.png
                gene_name: DGKE
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 29 percent done.
DGKZ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.655754e-02	ci left: 3.152266e-01	ci right 3.336757e-01	k: 3244	n:10000
Cons ci ratio: 9.764019e-02	ci left: 1.319816e-01	ci right 1.456295e-01	k: 1387	n:10000
KS ci ratio: 3.613873e-02	ci left: 5.306718e-01	ci right 5.503046e-01	k: 5405	n:10000
DGKZ   10000 perm   2 sec   (5743 perm/sec)   p_kst 5.405000e-01   p_cons 1.387000e-01   p_joint 3.244000e-01

Outputting figure to mutsig2_images.part000000000049/DGKZ.4_3925_10000_0.5405_0.1387_0.3244.png
                gene_name: DGKZ
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 32 percent done.
DEFB110
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.878481e-02	ci left: 2.986610e-01	ci right 3.168511e-01	k: 3077	n:10000
Cons ci ratio: 4.282578e-02	ci left: 4.460026e-01	ci right 4.656231e-01	k: 4558	n:10000
KS ci ratio: 9.291121e-02	ci left: 1.440348e-01	ci right 1.581691e-01	k: 1510	n:10000
DEFB110   10000 perm   1 sec   (7571 perm/sec)   p_kst 1.510000e-01   p_cons 4.558000e-01   p_joint 3.077000e-01

Outputting figure to mutsig2_images.part000000000049/DEFB110.3_348_10000_0.151_0.4558_0.3077.png
                gene_name: DEFB110
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 34 percent done.
DEFB112
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.322396e-02	ci left: 5.721598e-01	ci right 5.915924e-01	k: 5819	n:10000
Cons ci ratio: 6.820712e-03	ci left: 9.672044e-01	ci right 9.739177e-01	k: 9707	n:10000
KS ci ratio: 6.414628e-02	ci left: 2.630978e-01	ci right 2.806353e-01	k: 2718	n:10000
DEFB112   10000 perm   1 sec   (7919 perm/sec)   p_kst 2.718000e-01   p_cons 9.707000e-01   p_joint 5.819000e-01

Outputting figure to mutsig2_images.part000000000049/DEFB112.3_349_10000_0.2718_0.9707_0.5819.png
                gene_name: DEFB112
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 37 percent done.
DEM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.843462e-02	ci left: 6.457901e-01	ci right 6.645195e-01	k: 6552	n:10000
Cons ci ratio: 6.601149e-02	ci left: 2.520172e-01	ci right 2.693224e-01	k: 2606	n:10000
KS ci ratio: 3.368349e-02	ci left: 5.654409e-01	ci right 5.849153e-01	k: 5752	n:10000
DEM1   10000 perm   1 sec   (7130 perm/sec)   p_kst 5.752000e-01   p_cons 2.606000e-01   p_joint 6.552000e-01

Outputting figure to mutsig2_images.part000000000049/DEM1.3_1126_10000_0.5752_0.2606_0.6552.png
                gene_name: DEM1
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.66 

Current progress: 39 percent done.
DENND3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.457605e-02	ci left: 1.396231e-01	ci right 1.535834e-01	k: 1465	n:10000
Cons ci ratio: 2.284450e-01	ci left: 2.532660e-02	ci right 3.195180e-02	k: 285	n:10000
KS ci ratio: 4.338240e-02	ci left: 4.396164e-01	ci right 4.592131e-01	k: 4494	n:10000
DENND3   10000 perm   2 sec   (6104 perm/sec)   p_kst 4.494000e-01   p_cons 2.850000e-02   p_joint 1.465000e-01

Joint ci ratio: 7.532867e-02	ci left: 1.147399e-01	ci right 1.237711e-01	k: 2384	n:20000
Cons ci ratio: 1.596804e-01	ci left: 2.691024e-02	ci right 3.162794e-02	k: 584	n:20000
KS ci ratio: 3.067551e-02	ci left: 4.425388e-01	ci right 4.563759e-01	k: 8989	n:20000
DENND3   20000 perm   4 sec   (5450 perm/sec)   p_kst 4.494500e-01   p_cons 2.920000e-02   p_joint 1.192000e-01

Joint ci ratio: 5.083847e-02	ci left: 1.611786e-01	ci right 1.696197e-01	k: 4961	n:30000
Cons ci ratio: 1.294329e-01	ci left: 2.774345e-02	ci right 3.161501e-02	k: 889	n:30000
KS ci ratio: 2.523781e-02	ci left: 4.400644e-01	ci right 4.513462e-01	k: 13371	n:30000
DENND3   30000 perm   6 sec   (5218 perm/sec)   p_kst 4.457000e-01   p_cons 2.963333e-02   p_joint 1.653667e-01

Joint ci ratio: 4.000787e-02	ci left: 1.896633e-01	ci right 1.974312e-01	k: 7741	n:40000
Cons ci ratio: 1.139704e-01	ci left: 2.708559e-02	ci right 3.038330e-02	k: 1148	n:40000
KS ci ratio: 2.186243e-02	ci left: 4.406958e-01	ci right 4.504621e-01	k: 17823	n:40000
DENND3   40000 perm   8 sec   (5057 perm/sec)   p_kst 4.455750e-01   p_cons 2.870000e-02   p_joint 1.935250e-01

Joint ci ratio: 3.959479e-02	ci left: 1.606450e-01	ci right 1.671541e-01	k: 8194	n:50000
Cons ci ratio: 1.020574e-01	ci left: 2.719544e-02	ci right 3.013962e-02	k: 1432	n:50000
KS ci ratio: 1.957571e-02	ci left: 4.406772e-01	ci right 4.494091e-01	k: 22252	n:50000
DENND3   50000 perm   10 sec   (4931 perm/sec)   p_kst 4.450400e-01   p_cons 2.864000e-02   p_joint 1.638800e-01

Joint ci ratio: 4.173541e-02	ci left: 1.255017e-01	ci right 1.308677e-01	k: 7690	n:60000
Cons ci ratio: 9.323798e-02	ci left: 2.728082e-02	ci right 2.996504e-02	k: 1716	n:60000
KS ci ratio: 1.782829e-02	ci left: 4.422168e-01	ci right 4.501884e-01	k: 26772	n:60000
DENND3   60000 perm   12 sec   (4823 perm/sec)   p_kst 4.462000e-01   p_cons 2.860000e-02   p_joint 1.281667e-01

Outputting figure to mutsig2_images.part000000000049/DENND3.3_3685_60000_0.4462_0.0286_0.12817.png
                gene_name: DENND3
               theta_stop: 0.093 
                    nperm: 60000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.029 
      ci_cons_bounds_left: 0.027 
     ci_cons_bounds_right: 0.030 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 42 percent done.
DENND4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.369416e-02	ci left: 7.236062e-01	ci right 7.410582e-01	k: 7324	n:10000
KS ci ratio: 2.916815e-02	ci left: 6.341223e-01	ci right 6.529940e-01	k: 6436	n:10000
DENND4B   10000 perm   2 sec   (5772 perm/sec)   p_kst 6.436000e-01   p_cons 7.324000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000049/DENND4B.3_4599_10000_0.6436_0.7324_1.png
                gene_name: DENND4B
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 45 percent done.
DENND4C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.565505e-03	ci left: 9.694208e-01	ci right 9.758999e-01	k: 9728	n:10000
KS ci ratio: 2.457788e-02	ci left: 7.088662e-01	ci right 7.266068e-01	k: 7178	n:10000
DENND4C   10000 perm   2 sec   (5489 perm/sec)   p_kst 7.178000e-01   p_cons 9.728000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000049/DENND4C.3_5134_10000_0.7178_0.9728_1.png
                gene_name: DENND4C
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 47 percent done.
DENND5A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.907576e-02	ci left: 2.965789e-01	ci right 3.147345e-01	k: 3056	n:10000
Cons ci ratio: 4.882037e-02	ci left: 3.823146e-01	ci right 4.015484e-01	k: 3919	n:10000
KS ci ratio: 7.245979e-02	ci left: 2.181294e-01	ci right 2.346303e-01	k: 2263	n:10000
DENND5A   10000 perm   2 sec   (6062 perm/sec)   p_kst 2.263000e-01   p_cons 3.919000e-01   p_joint 3.056000e-01

Outputting figure to mutsig2_images.part000000000049/DENND5A.3_3956_10000_0.2263_0.3919_0.3056.png
                gene_name: DENND5A
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 50 percent done.
DENND5B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.340926e-02	ci left: 2.676508e-01	ci right 2.852796e-01	k: 2764	n:10000
KS ci ratio: 2.770819e-02	ci left: 6.574640e-01	ci right 6.760388e-01	k: 6668	n:10000
DENND5B   10000 perm   2 sec   (5824 perm/sec)   p_kst 6.668000e-01   p_cons 2.764000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000049/DENND5B.3_3909_10000_0.6668_0.2764_1.png
                gene_name: DENND5B
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 53 percent done.
DES
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.748407e-02	ci left: 6.610882e-01	ci right 6.796124e-01	k: 6704	n:10000
Cons ci ratio: 7.327604e-02	ci left: 2.142811e-01	ci right 2.306809e-01	k: 2224	n:10000
KS ci ratio: 1.520918e-02	ci left: 8.624338e-01	ci right 8.757504e-01	k: 8692	n:10000
DES   10000 perm   1 sec   (6828 perm/sec)   p_kst 8.692000e-01   p_cons 2.224000e-01   p_joint 6.704000e-01

Outputting figure to mutsig2_images.part000000000049/DES.3_1449_10000_0.8692_0.2224_0.6704.png
                gene_name: DES
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 55 percent done.
DFNB31
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.357589e-01	ci left: 2.372311e-02	ci right 3.015646e-02	k: 268	n:10000
Cons ci ratio: 8.310267e-02	ci left: 1.743827e-01	ci right 1.896031e-01	k: 1819	n:10000
KS ci ratio: 3.940154e-01	ci left: 7.872887e-03	ci right 1.182054e-02	k: 97	n:10000
DFNB31   10000 perm   2 sec   (6172 perm/sec)   p_kst 9.700000e-03   p_cons 1.819000e-01   p_joint 2.680000e-02

Joint ci ratio: 1.133214e-01	ci left: 5.324249e-02	ci right 5.968722e-02	k: 1128	n:20000
Cons ci ratio: 5.754901e-02	ci left: 1.828529e-01	ci right 1.937378e-01	k: 3765	n:20000
KS ci ratio: 2.924988e-01	ci left: 7.598793e-03	ci right 1.024694e-02	k: 177	n:20000
DFNB31   20000 perm   4 sec   (5495 perm/sec)   p_kst 8.850000e-03   p_cons 1.882500e-01   p_joint 5.640000e-02

Joint ci ratio: 1.819649e-01	ci left: 1.384596e-02	ci right 1.664906e-02	k: 456	n:30000
Cons ci ratio: 4.532527e-02	ci left: 1.950235e-01	ci right 2.041014e-01	k: 5986	n:30000
KS ci ratio: 2.388263e-01	ci left: 7.836974e-03	ci right 9.993079e-03	k: 266	n:30000
DFNB31   30000 perm   6 sec   (5252 perm/sec)   p_kst 8.866667e-03   p_cons 1.995333e-01   p_joint 1.520000e-02

Joint ci ratio: 1.136146e-01	ci left: 2.725574e-02	ci right 3.056312e-02	k: 1155	n:40000
Cons ci ratio: 3.946820e-02	ci left: 1.939059e-01	ci right 2.017380e-01	k: 7912	n:40000
KS ci ratio: 2.098245e-01	ci left: 7.742128e-03	ci right 9.580270e-03	k: 345	n:40000
DFNB31   40000 perm   8 sec   (5094 perm/sec)   p_kst 8.625000e-03   p_cons 1.978000e-01   p_joint 2.887500e-02

Joint ci ratio: 1.172661e-01	ci left: 2.057668e-02	ci right 2.315924e-02	k: 1092	n:50000
Cons ci ratio: 3.638558e-02	ci left: 1.849608e-01	ci right 1.918354e-01	k: 9419	n:50000
KS ci ratio: 1.871284e-01	ci left: 7.885551e-03	ci right 9.532250e-03	k: 434	n:50000
DFNB31   50000 perm   10 sec   (4968 perm/sec)   p_kst 8.680000e-03   p_cons 1.883800e-01   p_joint 2.184000e-02

Joint ci ratio: 1.149912e-01	ci left: 1.790638e-02	ci right 2.010716e-02	k: 1139	n:60000
Cons ci ratio: 3.340301e-02	ci left: 1.835558e-01	ci right 1.898079e-01	k: 11200	n:60000
KS ci ratio: 1.718233e-01	ci left: 7.860724e-03	ci right 9.354058e-03	k: 515	n:60000
DFNB31   60000 perm   12 sec   (4858 perm/sec)   p_kst 8.583333e-03   p_cons 1.866667e-01   p_joint 1.898333e-02

Joint ci ratio: 1.377977e-01	ci left: 1.064053e-02	ci right 1.222893e-02	k: 799	n:70000
Cons ci ratio: 3.096137e-02	ci left: 1.834358e-01	ci right 1.892188e-01	k: 13042	n:70000
KS ci ratio: 1.588118e-01	ci left: 7.942983e-03	ci right 9.326782e-03	k: 603	n:70000
DFNB31   70000 perm   15 sec   (4763 perm/sec)   p_kst 8.614286e-03   p_cons 1.863143e-01   p_joint 1.141429e-02

Joint ci ratio: 1.392218e-01	ci left: 9.128955e-03	ci right 1.050694e-02	k: 784	n:80000
Cons ci ratio: 2.894536e-02	ci left: 1.837936e-01	ci right 1.892041e-01	k: 14919	n:80000
KS ci ratio: 1.461486e-01	ci left: 8.260794e-03	ci right 9.575191e-03	k: 712	n:80000
DFNB31   80000 perm   17 sec   (4678 perm/sec)   p_kst 8.900000e-03   p_cons 1.864875e-01   p_joint 9.800000e-03

Joint ci ratio: 1.055286e-01	ci left: 1.430255e-02	ci right 1.590670e-02	k: 1358	n:90000
Cons ci ratio: 2.725603e-02	ci left: 1.843246e-01	ci right 1.894290e-01	k: 16818	n:90000
KS ci ratio: 1.384119e-01	ci left: 8.221608e-03	ci right 9.454806e-03	k: 794	n:90000
DFNB31   90000 perm   20 sec   (4593 perm/sec)   p_kst 8.822222e-03   p_cons 1.868667e-01   p_joint 1.508889e-02

Joint ci ratio: 1.106728e-01	ci left: 1.170384e-02	ci right 1.308466e-02	k: 1238	n:100000
Cons ci ratio: 2.583251e-02	ci left: 1.847467e-01	ci right 1.895915e-01	k: 18716	n:100000
KS ci ratio: 1.320146e-01	ci left: 8.162715e-03	ci right 9.326048e-03	k: 873	n:100000
DFNB31   100000 perm   22 sec   (4510 perm/sec)   p_kst 8.730000e-03   p_cons 1.871600e-01   p_joint 1.238000e-02

Joint ci ratio: 9.347411e-02	ci left: 1.500026e-02	ci right 1.647997e-02	k: 1730	n:110000
Cons ci ratio: 2.467658e-02	ci left: 1.842924e-01	ci right 1.889060e-01	k: 20525	n:110000
KS ci ratio: 1.250470e-01	ci left: 8.300561e-03	ci right 9.416475e-03	k: 973	n:110000
DFNB31   110000 perm   25 sec   (4413 perm/sec)   p_kst 8.845455e-03   p_cons 1.865909e-01   p_joint 1.572727e-02

Joint ci ratio: 1.075464e-01	ci left: 1.036076e-02	ci right 1.154639e-02	k: 1313	n:120000
Cons ci ratio: 2.365395e-02	ci left: 1.840342e-01	ci right 1.884477e-01	k: 22348	n:120000
KS ci ratio: 1.203274e-01	ci left: 8.238886e-03	ci right 9.301725e-03	k: 1051	n:120000
DFNB31   120000 perm   28 sec   (4343 perm/sec)   p_kst 8.758333e-03   p_cons 1.862333e-01   p_joint 1.094167e-02

Joint ci ratio: 1.018016e-01	ci left: 1.070250e-02	ci right 1.185791e-02	k: 1465	n:130000
Cons ci ratio: 2.278813e-02	ci left: 1.832983e-01	ci right 1.875311e-01	k: 24103	n:130000
KS ci ratio: 1.162604e-01	ci left: 8.164961e-03	ci right 9.180215e-03	k: 1126	n:130000
DFNB31   130000 perm   30 sec   (4278 perm/sec)   p_kst 8.661538e-03   p_cons 1.854077e-01   p_joint 1.126923e-02

Joint ci ratio: 1.005683e-01	ci left: 1.019550e-02	ci right 1.128205e-02	k: 1502	n:140000
Cons ci ratio: 2.200716e-02	ci left: 1.827200e-01	ci right 1.867930e-01	k: 25865	n:140000
KS ci ratio: 1.114168e-01	ci left: 8.275727e-03	ci right 9.259067e-03	k: 1226	n:140000
DFNB31   140000 perm   33 sec   (4210 perm/sec)   p_kst 8.757143e-03   p_cons 1.847500e-01   p_joint 1.072857e-02

Joint ci ratio: 1.063266e-01	ci left: 8.502286e-03	ci right 9.463504e-03	k: 1346	n:150000
Cons ci ratio: 2.125510e-02	ci left: 1.828718e-01	ci right 1.868071e-01	k: 27725	n:150000
KS ci ratio: 1.081230e-01	ci left: 8.216754e-03	ci right 9.162384e-03	k: 1302	n:150000
DFNB31   150000 perm   36 sec   (4149 perm/sec)   p_kst 8.680000e-03   p_cons 1.848333e-01   p_joint 8.973333e-03

Joint ci ratio: 8.597915e-02	ci left: 1.227327e-02	ci right 1.338199e-02	k: 2051	n:160000
Cons ci ratio: 2.059528e-02	ci left: 1.827140e-01	ci right 1.865224e-01	k: 29538	n:160000
KS ci ratio: 1.052976e-01	ci left: 8.135095e-03	ci right 9.045346e-03	k: 1373	n:160000
DFNB31   160000 perm   39 sec   (4088 perm/sec)   p_kst 8.581250e-03   p_cons 1.846125e-01   p_joint 1.281875e-02

Joint ci ratio: 8.787300e-02	ci left: 1.106187e-02	ci right 1.208430e-02	k: 1966	n:170000
Cons ci ratio: 1.994265e-02	ci left: 1.833383e-01	ci right 1.870372e-01	k: 31481	n:170000
KS ci ratio: 1.021846e-01	ci left: 8.143589e-03	ci right 9.026233e-03	k: 1458	n:170000
DFNB31   170000 perm   42 sec   (4026 perm/sec)   p_kst 8.576471e-03   p_cons 1.851824e-01   p_joint 1.156471e-02

Joint ci ratio: 8.955015e-02	ci left: 1.006140e-02	ci right 1.101002e-02	k: 1895	n:180000
Cons ci ratio: 1.938073e-02	ci left: 1.833911e-01	ci right 1.869857e-01	k: 33333	n:180000
KS ci ratio: 9.913821e-02	ci left: 8.184005e-03	ci right 9.043045e-03	k: 1549	n:180000
DFNB31   180000 perm   45 sec   (3969 perm/sec)   p_kst 8.605556e-03   p_cons 1.851833e-01   p_joint 1.052778e-02

Outputting figure to mutsig2_images.part000000000049/DFNB31.3_2772_180000_0.0086056_0.18518_0.010528.png
                gene_name: DFNB31
               theta_stop: 0.099 
                    nperm: 180000 
                     p_ks: 0.0086 
        ci_ks_bounds_left: 0.0082 
       ci_ks_bounds_right: 0.0090 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.011 
     ci_joint_bounds_left: 0.010 
    ci_joint_bounds_right: 0.011 

Current progress: 58 percent done.
DGAT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.546557e-02	ci left: 1.663205e-01	ci right 1.812701e-01	k: 1737	n:10000
Cons ci ratio: 1.244911e-01	ci left: 8.455810e-02	ci right 9.588194e-02	k: 901	n:10000
KS ci ratio: 5.542886e-02	ci left: 3.240605e-01	ci right 3.426367e-01	k: 3333	n:10000
DGAT2   10000 perm   1 sec   (7187 perm/sec)   p_kst 3.333000e-01   p_cons 9.010000e-02   p_joint 1.737000e-01

Joint ci ratio: 5.106245e-02	ci left: 2.217545e-01	ci right 2.334248e-01	k: 4551	n:20000
Cons ci ratio: 8.800347e-02	ci left: 8.626460e-02	ci right 9.425499e-02	k: 1804	n:20000
KS ci ratio: 3.951371e-02	ci left: 3.232347e-01	ci right 3.363148e-01	k: 6595	n:20000
DGAT2   20000 perm   3 sec   (6322 perm/sec)   p_kst 3.297500e-01   p_cons 9.020000e-02   p_joint 2.275500e-01

Outputting figure to mutsig2_images.part000000000049/DGAT2.3_1199_20000_0.32975_0.0902_0.22755.png
                gene_name: DGAT2
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.090 
      ci_cons_bounds_left: 0.086 
     ci_cons_bounds_right: 0.094 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 61 percent done.
DGCR8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.338395e-01	ci left: 7.368948e-02	ci right 8.435729e-02	k: 789	n:10000
Cons ci ratio: 1.391704e-01	ci left: 6.836336e-02	ci right 7.868673e-02	k: 734	n:10000
KS ci ratio: 8.698407e-02	ci left: 1.614075e-01	ci right 1.761860e-01	k: 1687	n:10000
DGCR8   10000 perm   1 sec   (7074 perm/sec)   p_kst 1.687000e-01   p_cons 7.340000e-02   p_joint 7.890000e-02

Joint ci ratio: 6.149698e-02	ci left: 1.636322e-01	ci right 1.740643e-01	k: 3376	n:20000
Cons ci ratio: 9.891973e-02	ci left: 6.918775e-02	ci right 7.643704e-02	k: 1455	n:20000
KS ci ratio: 6.205046e-02	ci left: 1.611634e-01	ci right 1.715338e-01	k: 3326	n:20000
DGCR8   20000 perm   3 sec   (6168 perm/sec)   p_kst 1.663000e-01   p_cons 7.275000e-02   p_joint 1.688000e-01

Outputting figure to mutsig2_images.part000000000049/DGCR8.3_2374_20000_0.1663_0.07275_0.1688.png
                gene_name: DGCR8
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.073 
      ci_cons_bounds_left: 0.069 
     ci_cons_bounds_right: 0.076 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 63 percent done.
DGKA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.214319e-02	ci left: 9.067909e-01	ci right 9.179675e-01	k: 9125	n:10000
KS ci ratio: 3.312167e-02	ci left: 5.736643e-01	ci right 5.930871e-01	k: 5834	n:10000
DGKA   10000 perm   3 sec   (3551 perm/sec)   p_kst 5.834000e-01   p_cons 9.125000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000049/DGKA.3_2300_10000_0.5834_0.9125_1.png
                gene_name: DGKA
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 66 percent done.
DHCR7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.043253e-02	ci left: 6.143208e-01	ci right 6.334069e-01	k: 6239	n:10000
KS ci ratio: 3.037421e-02	ci left: 6.152251e-01	ci right 6.343022e-01	k: 6248	n:10000
DHCR7   10000 perm   3 sec   (3530 perm/sec)   p_kst 6.248000e-01   p_cons 6.239000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000049/DHCR7.3_1456_10000_0.6248_0.6239_1.png
                gene_name: DHCR7
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
DEFB116
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.733309e-03	ci left: 9.372385e-01	ci right 9.465020e-01	k: 9420	n:10000
Cons ci ratio: 3.055584e-02	ci left: 6.124120e-01	ci right 6.315169e-01	k: 6220	n:10000
KS ci ratio: 4.265357e-02	ci left: 4.479986e-01	ci right 4.676260e-01	k: 4578	n:10000
DEFB116   10000 perm   1 sec   (7306 perm/sec)   p_kst 4.578000e-01   p_cons 6.220000e-01   p_joint 9.420000e-01

Outputting figure to mutsig2_images.part000000000049/DEFB116.2_316_10000_0.4578_0.622_0.942.png
                gene_name: DEFB116
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 71 percent done.
DEFB118
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.452213e-03	ci left: 9.947879e-01	ci right 9.973095e-01	k: 9962	n:10000
Cons ci ratio: 3.733377e-02	ci left: 5.144559e-01	ci right 5.341300e-01	k: 5243	n:10000
KS ci ratio: 1.940461e-02	ci left: 7.952698e-01	ci right 8.109533e-01	k: 8032	n:10000
DEFB118   10000 perm   2 sec   (5150 perm/sec)   p_kst 8.032000e-01   p_cons 5.243000e-01   p_joint 9.962000e-01

Outputting figure to mutsig2_images.part000000000049/DEFB118.2_380_10000_0.8032_0.5243_0.9962.png
                gene_name: DEFB118
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 1.00 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 1.00 

Current progress: 74 percent done.
DEFB131
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.762719e-02	ci left: 6.587727e-01	ci right 6.773293e-01	k: 6681	n:10000
Cons ci ratio: 2.781424e-02	ci left: 6.557528e-01	ci right 6.743510e-01	k: 6651	n:10000
KS ci ratio: 8.643025e-02	ci left: 1.631759e-01	ci right 1.780165e-01	k: 1705	n:10000
DEFB131   10000 perm   3 sec   (3778 perm/sec)   p_kst 1.705000e-01   p_cons 6.651000e-01   p_joint 6.681000e-01

Outputting figure to mutsig2_images.part000000000049/DEFB131.2_220_10000_0.1705_0.6651_0.6681.png
                gene_name: DEFB131
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 76 percent done.
DENND2C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.476979e-01	ci left: 6.092108e-02	ci right 7.073370e-02	k: 657	n:10000
Cons ci ratio: 2.453543e-02	ci left: 7.095727e-01	ci right 7.272999e-01	k: 7185	n:10000
KS ci ratio: 3.484002e-01	ci left: 1.032396e-02	ci right 1.476677e-02	k: 124	n:10000
DENND2C   10000 perm   2 sec   (6496 perm/sec)   p_kst 1.240000e-02   p_cons 7.185000e-01   p_joint 6.570000e-02

Joint ci ratio: 1.379597e-01	ci left: 3.611746e-02	ci right 4.151767e-02	k: 775	n:20000
Cons ci ratio: 1.745678e-02	ci left: 7.096944e-01	ci right 7.222428e-01	k: 14320	n:20000
KS ci ratio: 2.697250e-01	ci left: 9.040547e-03	ci right 1.190446e-02	k: 208	n:20000
DENND2C   20000 perm   4 sec   (5687 perm/sec)   p_kst 1.040000e-02   p_cons 7.160000e-01   p_joint 3.875000e-02

Joint ci ratio: 4.486697e-02	ci left: 1.982623e-01	ci right 2.073953e-01	k: 6084	n:30000
Cons ci ratio: 1.429090e-02	ci left: 7.097875e-01	ci right 7.200375e-01	k: 21448	n:30000
KS ci ratio: 2.225749e-01	ci left: 9.093958e-03	ci right 1.140237e-02	k: 306	n:30000
DENND2C   30000 perm   6 sec   (5309 perm/sec)   p_kst 1.020000e-02   p_cons 7.149333e-01   p_joint 2.028000e-01

Joint ci ratio: 2.507436e-02	ci left: 3.744915e-01	ci right 3.840260e-01	k: 15170	n:40000
Cons ci ratio: 1.240543e-02	ci left: 7.095185e-01	ci right 7.184004e-01	k: 28559	n:40000
KS ci ratio: 1.856325e-01	ci left: 1.000097e-02	ci right 1.207093e-02	k: 440	n:40000
DENND2C   40000 perm   8 sec   (5094 perm/sec)   p_kst 1.100000e-02   p_cons 7.139750e-01   p_joint 3.792500e-01

Joint ci ratio: 1.970622e-02	ci left: 4.374007e-01	ci right 4.461261e-01	k: 22088	n:50000
Cons ci ratio: 1.109347e-02	ci left: 7.100770e-01	ci right 7.180181e-01	k: 35703	n:50000
KS ci ratio: 1.668404e-01	ci left: 1.000837e-02	ci right 1.184908e-02	k: 545	n:50000
DENND2C   50000 perm   10 sec   (4935 perm/sec)   p_kst 1.090000e-02   p_cons 7.140600e-01   p_joint 4.417600e-01

Joint ci ratio: 2.967672e-02	ci left: 2.219290e-01	ci right 2.286309e-01	k: 13516	n:60000
Cons ci ratio: 1.012014e-02	ci left: 7.107002e-01	ci right 7.179458e-01	k: 42860	n:60000
KS ci ratio: 1.530378e-01	ci left: 9.988355e-03	ci right 1.165947e-02	k: 648	n:60000
DENND2C   60000 perm   13 sec   (4798 perm/sec)   p_kst 1.080000e-02   p_cons 7.143333e-01   p_joint 2.252667e-01

Joint ci ratio: 2.737655e-02	ci left: 2.234319e-01	ci right 2.296479e-01	k: 15857	n:70000
Cons ci ratio: 9.346596e-03	ci left: 7.119696e-01	ci right 7.186696e-01	k: 50073	n:70000
KS ci ratio: 1.410436e-01	ci left: 1.014400e-02	ci right 1.169695e-02	k: 763	n:70000
DENND2C   70000 perm   15 sec   (4701 perm/sec)   p_kst 1.090000e-02   p_cons 7.153286e-01   p_joint 2.265286e-01

Joint ci ratio: 1.810313e-02	ci left: 3.661663e-01	ci right 3.728681e-01	k: 29561	n:80000
Cons ci ratio: 8.744097e-03	ci left: 7.121338e-01	ci right 7.184006e-01	k: 57222	n:80000
KS ci ratio: 1.323289e-01	ci left: 1.013157e-02	ci right 1.157924e-02	k: 867	n:80000
DENND2C   80000 perm   17 sec   (4601 perm/sec)   p_kst 1.083750e-02   p_cons 7.152750e-01   p_joint 3.695125e-01

Joint ci ratio: 2.184353e-02	ci left: 2.606462e-01	ci right 2.664135e-01	k: 23717	n:90000
Cons ci ratio: 8.247560e-03	ci left: 7.121387e-01	ci right 7.180475e-01	k: 64359	n:90000
KS ci ratio: 1.254446e-01	ci left: 1.005961e-02	ci right 1.141665e-02	k: 965	n:90000
DENND2C   90000 perm   20 sec   (4516 perm/sec)   p_kst 1.072222e-02   p_cons 7.151000e-01   p_joint 2.635222e-01

Joint ci ratio: 2.071317e-02	ci left: 2.609708e-01	ci right 2.664429e-01	k: 26370	n:100000
Cons ci ratio: 7.828935e-03	ci left: 7.120505e-01	ci right 7.176570e-01	k: 71486	n:100000
KS ci ratio: 1.186354e-01	ci left: 1.015889e-02	ci right 1.144972e-02	k: 1079	n:100000
DENND2C   100000 perm   25 sec   (3976 perm/sec)   p_kst 1.079000e-02   p_cons 7.148600e-01   p_joint 2.637000e-01

Joint ci ratio: 1.972712e-02	ci left: 2.615327e-01	ci right 2.667524e-01	k: 29055	n:110000
Cons ci ratio: 7.454214e-03	ci left: 7.127506e-01	ci right 7.180925e-01	k: 78697	n:110000
KS ci ratio: 1.135500e-01	ci left: 1.010921e-02	ci right 1.133497e-02	k: 1178	n:110000
DENND2C   110000 perm   33 sec   (3306 perm/sec)   p_kst 1.070909e-02   p_cons 7.154273e-01   p_joint 2.641364e-01

Joint ci ratio: 1.889192e-02	ci left: 2.615491e-01	ci right 2.665457e-01	k: 31685	n:120000
Cons ci ratio: 7.147426e-03	ci left: 7.122611e-01	ci right 7.173785e-01	k: 85779	n:120000
KS ci ratio: 1.088950e-01	ci left: 1.010123e-02	ci right 1.127259e-02	k: 1281	n:120000
DENND2C   120000 perm   37 sec   (3256 perm/sec)   p_kst 1.067500e-02   p_cons 7.148250e-01   p_joint 2.640417e-01

Joint ci ratio: 1.791751e-02	ci left: 2.666905e-01	ci right 2.715198e-01	k: 34983	n:130000
Cons ci ratio: 6.868873e-03	ci left: 7.122522e-01	ci right 7.171690e-01	k: 92913	n:130000
KS ci ratio: 1.044268e-01	ci left: 1.016279e-02	ci right 1.128996e-02	k: 1393	n:130000
DENND2C   130000 perm   40 sec   (3280 perm/sec)   p_kst 1.071538e-02   p_cons 7.147154e-01   p_joint 2.691000e-01

Joint ci ratio: 1.750854e-02	ci left: 2.613362e-01	ci right 2.659593e-01	k: 36910	n:140000
Cons ci ratio: 6.606396e-03	ci left: 7.131215e-01	ci right 7.178553e-01	k: 100169	n:140000
KS ci ratio: 1.006360e-01	ci left: 1.018157e-02	ci right 1.126741e-02	k: 1500	n:140000
DENND2C   140000 perm   43 sec   (3294 perm/sec)   p_kst 1.071429e-02   p_cons 7.154929e-01   p_joint 2.636429e-01

Joint ci ratio: 1.691849e-02	ci left: 2.613317e-01	ci right 2.657974e-01	k: 39534	n:150000
Cons ci ratio: 6.384469e-03	ci left: 7.130690e-01	ci right 7.176427e-01	k: 107304	n:150000
KS ci ratio: 9.738337e-02	ci left: 1.016596e-02	ci right 1.121308e-02	k: 1602	n:150000
DENND2C   150000 perm   45 sec   (3309 perm/sec)   p_kst 1.068000e-02   p_cons 7.153600e-01   p_joint 2.635600e-01

Outputting figure to mutsig2_images.part000000000049/DENND2C.2_2684_150000_0.01068_0.71536_0.26356.png
                gene_name: DENND2C
               theta_stop: 0.097 
                    nperm: 150000 
                     p_ks: 0.011 
        ci_ks_bounds_left: 0.010 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 79 percent done.
DENND2D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.309272e-02	ci left: 1.435445e-01	ci right 1.576597e-01	k: 1505	n:10000
Cons ci ratio: 1.181872e-01	ci left: 9.321372e-02	ci right 1.050210e-01	k: 990	n:10000
KS ci ratio: 6.723193e-02	ci left: 2.450955e-01	ci right 2.622482e-01	k: 2536	n:10000
DENND2D   10000 perm   1 sec   (7070 perm/sec)   p_kst 2.536000e-01   p_cons 9.900000e-02   p_joint 1.505000e-01

Joint ci ratio: 7.860206e-02	ci left: 1.062360e-01	ci right 1.149776e-01	k: 2211	n:20000
Cons ci ratio: 8.242343e-02	ci left: 9.739693e-02	ci right 1.058193e-01	k: 2031	n:20000
KS ci ratio: 4.746533e-02	ci left: 2.482263e-01	ci right 2.603452e-01	k: 5085	n:20000
DENND2D   20000 perm   3 sec   (6187 perm/sec)   p_kst 2.542500e-01   p_cons 1.015500e-01   p_joint 1.105500e-01

Outputting figure to mutsig2_images.part000000000049/DENND2D.2_1464_20000_0.25425_0.10155_0.11055.png
                gene_name: DENND2D
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.097 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 82 percent done.
DEPDC1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.665324e-02	ci left: 1.992924e-01	ci right 2.152785e-01	k: 2072	n:10000
Cons ci ratio: 4.364913e-01	ci left: 6.259350e-03	ci right 9.836166e-03	k: 79	n:10000
KS ci ratio: 3.670253e-02	ci left: 5.229629e-01	ci right 5.426180e-01	k: 5328	n:10000
DEPDC1B   10000 perm   3 sec   (3302 perm/sec)   p_kst 5.328000e-01   p_cons 7.900000e-03   p_joint 2.072000e-01

Joint ci ratio: 5.063061e-02	ci left: 2.247273e-01	ci right 2.364511e-01	k: 4611	n:20000
Cons ci ratio: 2.892375e-01	ci left: 7.784307e-03	ci right 1.046133e-02	k: 181	n:20000
KS ci ratio: 2.599350e-02	ci left: 5.251055e-01	ci right 5.389852e-01	k: 10641	n:20000
DEPDC1B   20000 perm   10 sec   (1966 perm/sec)   p_kst 5.320500e-01   p_cons 9.050000e-03   p_joint 2.305500e-01

Joint ci ratio: 6.178573e-02	ci left: 1.146329e-01	ci right 1.219745e-01	k: 3548	n:30000
Cons ci ratio: 2.298730e-01	ci left: 8.496207e-03	ci right 1.073364e-02	k: 287	n:30000
KS ci ratio: 2.111706e-02	ci left: 5.289025e-01	ci right 5.402241e-01	k: 16037	n:30000
DEPDC1B   30000 perm   14 sec   (2167 perm/sec)   p_kst 5.345667e-01   p_cons 9.566667e-03   p_joint 1.182667e-01

Joint ci ratio: 4.571944e-02	ci left: 1.516889e-01	ci right 1.588112e-01	k: 6209	n:40000
Cons ci ratio: 1.990767e-01	ci left: 8.643905e-03	ci right 1.057829e-02	k: 383	n:40000
KS ci ratio: 1.827312e-02	ci left: 5.300722e-01	ci right 5.398727e-01	k: 21399	n:40000
DEPDC1B   40000 perm   16 sec   (2504 perm/sec)   p_kst 5.349750e-01   p_cons 9.575000e-03   p_joint 1.552250e-01

Joint ci ratio: 3.210686e-02	ci left: 2.259591e-01	ci right 2.333523e-01	k: 11482	n:50000
Cons ci ratio: 1.778731e-01	ci left: 8.763884e-03	ci right 1.049376e-02	k: 480	n:50000
KS ci ratio: 1.630848e-02	ci left: 5.316768e-01	ci right 5.404390e-01	k: 26803	n:50000
DEPDC1B   50000 perm   18 sec   (2753 perm/sec)   p_kst 5.360600e-01   p_cons 9.600000e-03   p_joint 2.296400e-01

Joint ci ratio: 3.014781e-02	ci left: 2.165083e-01	ci right 2.231521e-01	k: 13189	n:60000
Cons ci ratio: 1.632631e-01	ci left: 8.739285e-03	ci right 1.030871e-02	k: 570	n:60000
KS ci ratio: 1.493736e-02	ci left: 5.303988e-01	ci right 5.383979e-01	k: 32064	n:60000
DEPDC1B   60000 perm   20 sec   (2937 perm/sec)   p_kst 5.344000e-01   p_cons 9.500000e-03   p_joint 2.198167e-01

Joint ci ratio: 2.639554e-02	ci left: 2.364132e-01	ci right 2.427512e-01	k: 16770	n:70000
Cons ci ratio: 1.501506e-01	ci left: 8.918411e-03	ci right 1.037981e-02	k: 674	n:70000
KS ci ratio: 1.380317e-02	ci left: 5.316396e-01	ci right 5.390432e-01	k: 37474	n:70000
DEPDC1B   70000 perm   23 sec   (3073 perm/sec)   p_kst 5.353429e-01   p_cons 9.628571e-03   p_joint 2.395714e-01

Joint ci ratio: 2.381365e-02	ci left: 2.499903e-01	ci right 2.560276e-01	k: 20240	n:80000
Cons ci ratio: 1.403089e-01	ci left: 8.984153e-03	ci right 1.035176e-02	k: 772	n:80000
KS ci ratio: 1.288852e-02	ci left: 5.327743e-01	ci right 5.396980e-01	k: 42899	n:80000
DEPDC1B   80000 perm   25 sec   (3170 perm/sec)   p_kst 5.362375e-01   p_cons 9.650000e-03   p_joint 2.530000e-01

Joint ci ratio: 2.446903e-02	ci left: 2.191666e-01	ci right 2.246069e-01	k: 19969	n:90000
Cons ci ratio: 1.317977e-01	ci left: 9.091463e-03	ci right 1.038488e-02	k: 875	n:90000
KS ci ratio: 1.217436e-02	ci left: 5.320349e-01	ci right 5.385628e-01	k: 48177	n:90000
DEPDC1B   90000 perm   28 sec   (3251 perm/sec)   p_kst 5.353000e-01   p_cons 9.722222e-03   p_joint 2.218778e-01

Joint ci ratio: 2.332274e-02	ci left: 2.176946e-01	ci right 2.228417e-01	k: 22026	n:100000
Cons ci ratio: 1.249264e-01	ci left: 9.140554e-03	ci right 1.036813e-02	k: 974	n:100000
KS ci ratio: 1.154638e-02	ci left: 5.323428e-01	ci right 5.385351e-01	k: 53544	n:100000
DEPDC1B   100000 perm   30 sec   (3294 perm/sec)   p_kst 5.354400e-01   p_cons 9.740000e-03   p_joint 2.202600e-01

Joint ci ratio: 2.598531e-02	ci left: 1.691861e-01	ci right 1.736494e-01	k: 18855	n:110000
Cons ci ratio: 1.181431e-01	ci left: 9.323333e-03	ci right 1.050272e-02	k: 1089	n:110000
KS ci ratio: 1.100531e-02	ci left: 5.326564e-01	ci right 5.385599e-01	k: 58917	n:110000
DEPDC1B   110000 perm   36 sec   (3098 perm/sec)   p_kst 5.356091e-01   p_cons 9.900000e-03   p_joint 1.714091e-01

Joint ci ratio: 2.815969e-02	ci left: 1.370721e-01	ci right 1.409954e-01	k: 16683	n:120000
Cons ci ratio: 1.127354e-01	ci left: 9.412339e-03	ci right 1.054486e-02	k: 1196	n:120000
KS ci ratio: 1.052481e-02	ci left: 5.333484e-01	ci right 5.389998e-01	k: 64341	n:120000
DEPDC1B   120000 perm   38 sec   (3131 perm/sec)   p_kst 5.361750e-01   p_cons 9.966667e-03   p_joint 1.390250e-01

Joint ci ratio: 2.717939e-02	ci left: 1.360605e-01	ci right 1.398172e-01	k: 17931	n:130000
Cons ci ratio: 1.078829e-01	ci left: 9.511152e-03	ci right 1.060318e-02	k: 1306	n:130000
KS ci ratio: 1.010813e-02	ci left: 5.336461e-01	ci right 5.390753e-01	k: 69727	n:130000
DEPDC1B   130000 perm   41 sec   (3166 perm/sec)   p_kst 5.363615e-01   p_cons 1.004615e-02   p_joint 1.379308e-01

Joint ci ratio: 2.626918e-02	ci left: 1.354230e-01	ci right 1.390349e-01	k: 19211	n:140000
Cons ci ratio: 1.040160e-01	ci left: 9.520193e-03	ci right 1.057168e-02	k: 1405	n:140000
KS ci ratio: 9.735076e-03	ci left: 5.340193e-01	ci right 5.392506e-01	k: 75129	n:140000
DEPDC1B   140000 perm   44 sec   (3166 perm/sec)   p_kst 5.366357e-01   p_cons 1.003571e-02   p_joint 1.372214e-01

Joint ci ratio: 2.613805e-02	ci left: 1.286864e-01	ci right 1.321012e-01	k: 19558	n:150000
Cons ci ratio: 1.003018e-01	ci left: 9.574139e-03	ci right 1.059160e-02	k: 1511	n:150000
KS ci ratio: 9.399608e-03	ci left: 5.343926e-01	ci right 5.394460e-01	k: 80538	n:150000
DEPDC1B   150000 perm   47 sec   (3168 perm/sec)   p_kst 5.369200e-01   p_cons 1.007333e-02   p_joint 1.303867e-01

Joint ci ratio: 1.907815e-02	ci left: 2.067795e-01	ci right 2.107686e-01	k: 33403	n:160000
Cons ci ratio: 9.735493e-02	ci left: 9.542631e-03	ci right 1.052525e-02	k: 1604	n:160000
KS ci ratio: 9.097157e-03	ci left: 5.346905e-01	ci right 5.395831e-01	k: 85942	n:160000
DEPDC1B   160000 perm   50 sec   (3182 perm/sec)   p_kst 5.371375e-01   p_cons 1.002500e-02   p_joint 2.087688e-01

Outputting figure to mutsig2_images.part000000000049/DEPDC1B.2_1634_160000_0.53714_0.010025_0.20877.png
                gene_name: DEPDC1B
               theta_stop: 0.097 
                    nperm: 160000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.010 
      ci_cons_bounds_left: 0.0095 
     ci_cons_bounds_right: 0.011 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.21 

Current progress: 84 percent done.
DEPDC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.847911e-02	ci left: 8.104985e-01	ci right 8.257157e-01	k: 8182	n:10000
KS ci ratio: 1.552184e-02	ci left: 8.576357e-01	ci right 8.711513e-01	k: 8645	n:10000
DEPDC4   10000 perm   2 sec   (4057 perm/sec)   p_kst 8.645000e-01   p_cons 8.182000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000049/DEPDC4.2_905_10000_0.8645_0.8182_1.png
                gene_name: DEPDC4
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
DEPDC6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.263071e-02	ci left: 9.001114e-01	ci right 9.116509e-01	k: 9060	n:10000
Cons ci ratio: 3.861067e-02	ci left: 4.976503e-01	ci right 5.173453e-01	k: 5075	n:10000
KS ci ratio: 4.936750e-02	ci left: 3.770397e-01	ci right 3.962264e-01	k: 3866	n:10000
DEPDC6   10000 perm   1 sec   (7164 perm/sec)   p_kst 3.866000e-01   p_cons 5.075000e-01   p_joint 9.060000e-01

Outputting figure to mutsig2_images.part000000000049/DEPDC6.2_1266_10000_0.3866_0.5075_0.906.png
                gene_name: DEPDC6
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 89 percent done.
DFFB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.107083e-01	ci left: 1.051997e-01	ci right 1.176277e-01	k: 1113	n:10000
Cons ci ratio: 4.612326e-02	ci left: 4.096033e-01	ci right 4.290437e-01	k: 4193	n:10000
KS ci ratio: 1.610905e-01	ci left: 5.138109e-02	ci right 6.047977e-02	k: 558	n:10000
DFFB   10000 perm   1 sec   (6912 perm/sec)   p_kst 5.580000e-02   p_cons 4.193000e-01   p_joint 1.113000e-01

Joint ci ratio: 5.036807e-02	ci left: 2.265607e-01	ci right 2.383172e-01	k: 4648	n:20000
Cons ci ratio: 3.256688e-02	ci left: 4.131967e-01	ci right 4.269266e-01	k: 8401	n:20000
KS ci ratio: 1.130563e-01	ci left: 5.348580e-02	ci right 5.994383e-02	k: 1133	n:20000
DFFB   20000 perm   3 sec   (6106 perm/sec)   p_kst 5.665000e-02   p_cons 4.200500e-01   p_joint 2.324000e-01

Joint ci ratio: 8.745376e-02	ci left: 6.001521e-02	ci right 6.553650e-02	k: 1882	n:30000
Cons ci ratio: 2.647637e-02	ci left: 4.165688e-01	ci right 4.277796e-01	k: 12665	n:30000
KS ci ratio: 9.438741e-02	ci left: 5.179491e-02	ci right 5.695849e-02	k: 1630	n:30000
DFFB   30000 perm   5 sec   (5904 perm/sec)   p_kst 5.433333e-02   p_cons 4.221667e-01   p_joint 6.273333e-02

Outputting figure to mutsig2_images.part000000000049/DFFB.2_1045_30000_0.054333_0.42217_0.062733.png
                gene_name: DFFB
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.054 
        ci_ks_bounds_left: 0.052 
       ci_ks_bounds_right: 0.057 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.063 
     ci_joint_bounds_left: 0.060 
    ci_joint_bounds_right: 0.066 

Current progress: 92 percent done.
DFNB59
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.011454e-02	ci left: 3.699753e-01	ci right 3.890950e-01	k: 3795	n:10000
Cons ci ratio: 3.765680e-02	ci left: 5.101534e-01	ci right 5.298350e-01	k: 5200	n:10000
KS ci ratio: 8.224759e-02	ci left: 1.774321e-01	ci right 1.927518e-01	k: 1850	n:10000
DFNB59   10000 perm   2 sec   (4995 perm/sec)   p_kst 1.850000e-01   p_cons 5.200000e-01   p_joint 3.795000e-01

Outputting figure to mutsig2_images.part000000000049/DFNB59.2_1083_10000_0.185_0.52_0.3795.png
                gene_name: DFNB59
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 95 percent done.
DGAT2L6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.046551e-02	ci left: 1.840255e-01	ci right 1.995545e-01	k: 1917	n:10000
Cons ci ratio: 7.333963e-02	ci left: 2.139851e-01	ci right 2.303771e-01	k: 2221	n:10000
KS ci ratio: 5.272375e-02	ci left: 3.465091e-01	ci right 3.653749e-01	k: 3559	n:10000
DGAT2L6   10000 perm   3 sec   (3602 perm/sec)   p_kst 3.559000e-01   p_cons 2.221000e-01   p_joint 1.917000e-01

Outputting figure to mutsig2_images.part000000000049/DGAT2L6.2_1042_10000_0.3559_0.2221_0.1917.png
                gene_name: DGAT2L6
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 97 percent done.
DGKG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.743326e-02	ci left: 3.085789e-01	ci right 3.269274e-01	k: 3177	n:10000
Cons ci ratio: 8.579437e-02	ci left: 1.652394e-01	ci right 1.801518e-01	k: 1726	n:10000
KS ci ratio: 3.698355e-02	ci left: 5.191594e-01	ci right 5.388237e-01	k: 5290	n:10000
DGKG   10000 perm   5 sec   (1985 perm/sec)   p_kst 5.290000e-01   p_cons 1.726000e-01   p_joint 3.177000e-01

Outputting figure to mutsig2_images.part000000000049/DGKG.2_2472_10000_0.529_0.1726_0.3177.png
                gene_name: DGKG
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000049
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 49 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1559>
Subject: Job 8004013: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1559>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000050> was used as the working directory.
Started at Sun Nov 11 15:05:13 2012
Results reported at Sun Nov 11 15:16:32 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000050.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000050.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 50  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000050.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    792.63 sec.
    Max Memory :      4730 MB
    Max Swap   :      7076 MB

    Max Processes  :         7
    Max Threads    :        60

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
50
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 50
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 50: processing genes 4434 - 4524
Calculating significance of each gene.
Using projection method.
4434	DHH	5.914183e-01
4435	DHODH	1
4436	DHPS	7.957220e-01
4437	DHRS1	1
4438	DHRS11	6.349159e-01
4439	DHRS12	1
4440	DHRS13	1
4441	DHRS2	4.318391e-01
4442	DHRS3	1
4443	DHRS4	5.939606e-01
4444	DHRS4L1	2.930347e-02
4445	DHRS4L2	3.542510e-01
4446	DHRS7	1
4447	DHRS7B	1
4448	DHRS7C	1.764093e-02
4449	DHRS9	1
4450	DHRSX	4.339195e-02
4451	DHTKD1	1.821757e-01
4452	DHX15	6.180687e-01
4453	DHX16	9.341772e-01
4454	DHX29	1
4455	DHX30	9.396510e-01
4456	DHX32	7.659741e-01
4457	DHX33	8.805265e-01
4458	DHX34	9.768015e-01
4459	DHX35	1
4460	DHX36	5.006020e-01
4461	DHX37	1
4462	DHX38	9.565923e-01
4463	DHX40	1
4464	DHX57	9.945290e-01
4465	DHX58	1
4466	DHX8	9.379269e-01
4467	DHX9	5.548607e-01
4468	DIABLO	1
4469	DIAPH1	1
4470	DIAPH2	9.556927e-01
4471	DIAPH3	9.754840e-01
4472	DICER1	2.822939e-01
4473	DIDO1	9.944585e-01
4474	DIMT1L	5.265339e-01
4475	DIO1	1
4476	DIO2	1.806093e-01
4477	DIO3	2.691466e-01
4478	DIP2A	1
4479	DIP2B	5.468275e-01
4480	DIP2C	7.486014e-01
4481	DIRAS1	2.999897e-01
4482	DIRAS2	4.501311e-01
4483	DIRAS3	1
4484	DIRC1	5.512572e-02
4485	DIRC2	1.196288e-01
4486	DIS3	1
4487	DIS3L	5.819207e-01
4488	DIS3L2	9.536311e-01
4489	DISC1	1
4490	DISP1	9.759717e-01
4491	DISP2	9.929900e-01
4492	DIXDC1	6.044886e-01
4493	DKC1	1
4494	DKFZp761E198	1
4495	DKK1	3.414367e-02
4496	DKK2	5.569886e-01
4497	DKK3	1
4498	DKK4	1
4499	DKKL1	1
4500	DLAT	9.061906e-01
4501	DLC1	1
4502	DLD	4.540175e-01
4503	DLEC1	9.990502e-01
4504	DLEU7	1
4505	DLG1	4.214891e-01
4506	DLG2	1.414838e-02
4507	DLG3	9.263064e-01
4508	DLG4	1
4509	DLG5	9.616281e-01
4510	DLGAP1	7.967979e-01
4511	DLGAP2	6.438315e-02
4512	DLGAP3	1
4513	DLGAP4	1
4514	DLGAP5	3.916823e-01
4515	DLK1	2.467444e-01
4516	DLK2	1
4517	DLL1	1
4518	DLL3	5.856475e-01
4519	DLL4	9.353527e-01
4520	DLST	7.075139e-01
4521	DLX1	1
4522	DLX2	2.063933e-01
4523	DLX3	1
4524	DLX4	3.963635e-01
Done

Running MutSig 2:
Scatter job 50: processing genes 4434 - 4524
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
DIDO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.041866e-01	ci left: 1.175028e-01	ci right 1.305171e-01	k: 1239	n:10000
Cons ci ratio: 3.364216e-02	ci left: 5.660425e-01	ci right 5.855133e-01	k: 5758	n:10000
KS ci ratio: 1.243397e-01	ci left: 8.475243e-02	ci right 9.608748e-02	k: 903	n:10000
DIDO1   10000 perm   4 sec   (2816 perm/sec)   p_kst 9.030000e-02   p_cons 5.758000e-01   p_joint 1.239000e-01

Joint ci ratio: 5.730544e-02	ci left: 1.841384e-01	ci right 1.950520e-01	k: 3791	n:20000
Cons ci ratio: 2.431511e-02	ci left: 5.581954e-01	ci right 5.719857e-01	k: 11302	n:20000
KS ci ratio: 8.948263e-02	ci left: 8.361907e-02	ci right 9.150132e-02	k: 1750	n:20000
DIDO1   20000 perm   11 sec   (1783 perm/sec)   p_kst 8.750000e-02   p_cons 5.651000e-01   p_joint 1.895500e-01

Outputting figure to mutsig2_images.part000000000050/DIDO1.15_6909_20000_0.0875_0.5651_0.18955.png
                gene_name: DIDO1
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.087 
        ci_ks_bounds_left: 0.084 
       ci_ks_bounds_right: 0.092 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 2 percent done.
DICER1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.856056e-02	ci left: 6.437780e-01	ci right 6.625327e-01	k: 6532	n:10000
Cons ci ratio: 5.544133e-02	ci left: 3.239612e-01	ci right 3.425360e-01	k: 3332	n:10000
KS ci ratio: 3.078365e-02	ci left: 6.088960e-01	ci right 6.280350e-01	k: 6185	n:10000
DICER1   10000 perm   3 sec   (3356 perm/sec)   p_kst 6.185000e-01   p_cons 3.332000e-01   p_joint 6.532000e-01

Outputting figure to mutsig2_images.part000000000050/DICER1.13_5873_10000_0.6185_0.3332_0.6532.png
                gene_name: DICER1
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 4 percent done.
DLG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.504683e-02	ci left: 5.458961e-01	ci right 5.654714e-01	k: 5557	n:10000
Cons ci ratio: 6.177028e-02	ci left: 2.781469e-01	ci right 2.959773e-01	k: 2870	n:10000
KS ci ratio: 4.831215e-02	ci left: 3.872920e-01	ci right 4.065681e-01	k: 3969	n:10000
DLG2   10000 perm   2 sec   (4087 perm/sec)   p_kst 3.969000e-01   p_cons 2.870000e-01   p_joint 5.557000e-01

Outputting figure to mutsig2_images.part000000000050/DLG2.13_3237_10000_0.3969_0.287_0.5557.png
                gene_name: DLG2
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 6 percent done.
DLGAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.225593e-01	ci left: 8.708509e-02	ci right 9.855338e-02	k: 927	n:10000
Cons ci ratio: 1.014946e-01	ci left: 1.231736e-01	ci right 1.364429e-01	k: 1297	n:10000
KS ci ratio: 8.732659e-02	ci left: 1.603269e-01	ci right 1.750672e-01	k: 1676	n:10000
DLGAP1   10000 perm   2 sec   (4692 perm/sec)   p_kst 1.676000e-01   p_cons 1.297000e-01   p_joint 9.270000e-02

Joint ci ratio: 6.747077e-02	ci left: 1.395063e-01	ci right 1.492974e-01	k: 2887	n:20000
Cons ci ratio: 7.089269e-02	ci left: 1.278792e-01	ci right 1.373279e-01	k: 2651	n:20000
KS ci ratio: 6.167284e-02	ci left: 1.628421e-01	ci right 1.732546e-01	k: 3360	n:20000
DLGAP1   20000 perm   5 sec   (4179 perm/sec)   p_kst 1.680000e-01   p_cons 1.325500e-01   p_joint 1.443500e-01

Outputting figure to mutsig2_images.part000000000050/DLGAP1.10_3029_20000_0.168_0.13255_0.14435.png
                gene_name: DLGAP1
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 9 percent done.
DLGAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.284292e-02	ci left: 7.378529e-01	ci right 7.550034e-01	k: 7465	n:10000
Cons ci ratio: 5.323349e-02	ci left: 3.421367e-01	ci right 3.609498e-01	k: 3515	n:10000
KS ci ratio: 2.552061e-02	ci left: 6.932301e-01	ci right 7.112519e-01	k: 7023	n:10000
DLGAP2   10000 perm   2 sec   (4653 perm/sec)   p_kst 7.023000e-01   p_cons 3.515000e-01   p_joint 7.465000e-01

Outputting figure to mutsig2_images.part000000000050/DLGAP2.9_2972_10000_0.7023_0.3515_0.7465.png
                gene_name: DLGAP2
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 11 percent done.
DISP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.227413e-02	ci left: 2.190177e-01	ci right 2.355415e-01	k: 2272	n:10000
Cons ci ratio: 2.840946e-02	ci left: 6.461925e-01	ci right 6.649168e-01	k: 6556	n:10000
KS ci ratio: 1.085277e-01	ci left: 1.091029e-01	ci right 1.217221e-01	k: 1153	n:10000
DISP1   10000 perm   2 sec   (4184 perm/sec)   p_kst 1.153000e-01   p_cons 6.556000e-01   p_joint 2.272000e-01

Joint ci ratio: 5.976930e-02	ci left: 1.716833e-01	ci right 1.823108e-01	k: 3539	n:20000
Cons ci ratio: 1.982089e-02	ci left: 6.550445e-01	ci right 6.682085e-01	k: 13233	n:20000
KS ci ratio: 7.719653e-02	ci left: 1.097742e-01	ci right 1.186383e-01	k: 2283	n:20000
DISP1   20000 perm   5 sec   (3753 perm/sec)   p_kst 1.141500e-01   p_cons 6.616500e-01   p_joint 1.769500e-01

Outputting figure to mutsig2_images.part000000000050/DISP1.8_4603_20000_0.11415_0.66165_0.17695.png
                gene_name: DISP1
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 13 percent done.
DLC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.226381e-02	ci left: 5.864060e-01	ci right 6.057380e-01	k: 5961	n:10000
Cons ci ratio: 5.574205e-02	ci left: 3.215787e-01	ci right 3.401199e-01	k: 3308	n:10000
KS ci ratio: 2.867409e-02	ci left: 6.419672e-01	ci right 6.607446e-01	k: 6514	n:10000
DLC1   10000 perm   2 sec   (4087 perm/sec)   p_kst 6.514000e-01   p_cons 3.308000e-01   p_joint 5.961000e-01

Outputting figure to mutsig2_images.part000000000050/DLC1.8_4740_10000_0.6514_0.3308_0.5961.png
                gene_name: DLC1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 15 percent done.
DHTKD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.441696e-02	ci left: 2.090529e-01	ci right 2.253122e-01	k: 2171	n:10000
Cons ci ratio: 6.960300e-02	ci left: 2.323474e-01	ci right 2.492038e-01	k: 2407	n:10000
KS ci ratio: 9.408775e-02	ci left: 1.408974e-01	ci right 1.549084e-01	k: 1478	n:10000
DHTKD1   10000 perm   2 sec   (4611 perm/sec)   p_kst 1.478000e-01   p_cons 2.407000e-01   p_joint 2.171000e-01

Outputting figure to mutsig2_images.part000000000050/DHTKD1.7_2828_10000_0.1478_0.2407_0.2171.png
                gene_name: DHTKD1
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 17 percent done.
DIP2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.147262e-02	ci left: 7.608141e-01	ci right 7.774289e-01	k: 7692	n:10000
Cons ci ratio: 4.555035e-02	ci left: 4.156828e-01	ci right 4.351607e-01	k: 4254	n:10000
KS ci ratio: 2.772690e-02	ci left: 6.571620e-01	ci right 6.757409e-01	k: 6665	n:10000
DIP2B   10000 perm   3 sec   (3859 perm/sec)   p_kst 6.665000e-01   p_cons 4.254000e-01   p_joint 7.692000e-01

Outputting figure to mutsig2_images.part000000000050/DIP2B.7_4883_10000_0.6665_0.4254_0.7692.png
                gene_name: DIP2B
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 19 percent done.
DIP2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.312847e-02	ci left: 8.931325e-01	ci right 9.050339e-01	k: 8992	n:10000
Cons ci ratio: 7.548344e-02	ci left: 2.043197e-01	ci right 2.204482e-01	k: 2123	n:10000
KS ci ratio: 2.531331e-02	ci left: 6.966589e-01	ci right 7.146211e-01	k: 7057	n:10000
DIP2A   10000 perm   2 sec   (4141 perm/sec)   p_kst 7.057000e-01   p_cons 2.123000e-01   p_joint 8.992000e-01

Outputting figure to mutsig2_images.part000000000050/DIP2A.6_4981_10000_0.7057_0.2123_0.8992.png
                gene_name: DIP2A
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.91 

Current progress: 21 percent done.
DHX9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.509198e-01	ci left: 5.814929e-03	ci right 9.281233e-03	k: 74	n:10000
Cons ci ratio: 7.829804e-01	ci left: 1.538312e-03	ci right 3.568919e-03	k: 24	n:10000
KS ci ratio: 1.064529e-01	ci left: 1.130085e-01	ci right 1.258142e-01	k: 1193	n:10000
DHX9   10000 perm   2 sec   (4995 perm/sec)   p_kst 1.193000e-01   p_cons 2.400000e-03   p_joint 7.400000e-03

Joint ci ratio: 4.854134e-01	ci left: 2.465236e-03	ci right 4.084517e-03	k: 64	n:20000
Cons ci ratio: 5.377261e-01	ci left: 1.942395e-03	ci right 3.408173e-03	k: 52	n:20000
KS ci ratio: 7.550851e-02	ci left: 1.142482e-01	ci right 1.232630e-01	k: 2374	n:20000
DHX9   20000 perm   4 sec   (4472 perm/sec)   p_kst 1.187000e-01   p_cons 2.600000e-03   p_joint 3.200000e-03

Joint ci ratio: 1.759980e-01	ci left: 1.483366e-02	ci right 1.772779e-02	k: 487	n:30000
Cons ci ratio: 3.110310e-01	ci left: 4.448416e-03	ci right 6.116268e-03	k: 157	n:30000
KS ci ratio: 6.115231e-02	ci left: 1.167706e-01	ci right 1.241697e-01	k: 3613	n:30000
DHX9   30000 perm   7 sec   (4252 perm/sec)   p_kst 1.204333e-01   p_cons 5.233333e-03   p_joint 1.623333e-02

Joint ci ratio: 1.195496e-01	ci left: 2.460810e-02	ci right 2.776119e-02	k: 1046	n:40000
Cons ci ratio: 2.685090e-01	ci left: 4.588736e-03	ci right 6.034512e-03	k: 211	n:40000
KS ci ratio: 5.294504e-02	ci left: 1.173248e-01	ci right 1.237304e-01	k: 4820	n:40000
DHX9   40000 perm   10 sec   (4117 perm/sec)   p_kst 1.205000e-01   p_cons 5.275000e-03   p_joint 2.615000e-02

Joint ci ratio: 1.314307e-01	ci left: 1.633003e-02	ci right 1.864648e-02	k: 873	n:50000
Cons ci ratio: 2.424728e-01	ci left: 4.569652e-03	ci right 5.848830e-03	k: 259	n:50000
KS ci ratio: 4.733883e-02	ci left: 1.177378e-01	ci right 1.234663e-01	k: 6029	n:50000
DHX9   50000 perm   12 sec   (4014 perm/sec)   p_kst 1.205800e-01   p_cons 5.180000e-03   p_joint 1.746000e-02

Joint ci ratio: 1.257668e-01	ci left: 1.493038e-02	ci right 1.695016e-02	k: 955	n:60000
Cons ci ratio: 2.224242e-01	ci left: 4.577230e-03	ci right 5.738094e-03	k: 308	n:60000
KS ci ratio: 4.324148e-02	ci left: 1.178557e-01	ci right 1.230811e-01	k: 7227	n:60000
DHX9   60000 perm   15 sec   (3915 perm/sec)   p_kst 1.204500e-01   p_cons 5.133333e-03   p_joint 1.591667e-02

Joint ci ratio: 1.238913e-01	ci left: 1.322577e-02	ci right 1.498627e-02	k: 986	n:70000
Cons ci ratio: 2.066465e-01	ci left: 4.585774e-03	ci right 5.655881e-03	k: 357	n:70000
KS ci ratio: 4.001948e-02	ci left: 1.181253e-01	ci right 1.229633e-01	k: 8437	n:70000
DHX9   70000 perm   18 sec   (3843 perm/sec)   p_kst 1.205286e-01   p_cons 5.100000e-03   p_joint 1.408571e-02

Joint ci ratio: 1.269655e-01	ci left: 1.102689e-02	ci right 1.253383e-02	k: 941	n:80000
Cons ci ratio: 1.935722e-01	ci left: 4.606267e-03	ci right 5.605141e-03	k: 407	n:80000
KS ci ratio: 3.735652e-02	ci left: 1.187228e-01	ci right 1.232547e-01	k: 9678	n:80000
DHX9   80000 perm   21 sec   (3771 perm/sec)   p_kst 1.209750e-01   p_cons 5.087500e-03   p_joint 1.176250e-02

Joint ci ratio: 1.297927e-01	ci left: 9.381736e-03	ci right 1.069458e-02	k: 902	n:90000
Cons ci ratio: 1.823023e-01	ci left: 4.645081e-03	ci right 5.587250e-03	k: 459	n:90000
KS ci ratio: 3.510624e-02	ci left: 1.195376e-01	ci right 1.238201e-01	k: 10950	n:90000
DHX9   90000 perm   24 sec   (3701 perm/sec)   p_kst 1.216667e-01   p_cons 5.100000e-03   p_joint 1.002222e-02

Joint ci ratio: 1.123843e-01	ci left: 1.134404e-02	ci right 1.270448e-02	k: 1201	n:100000
Cons ci ratio: 1.726269e-01	ci left: 4.687052e-03	ci right 5.582022e-03	k: 512	n:100000
KS ci ratio: 3.336841e-02	ci left: 1.192428e-01	ci right 1.232992e-01	k: 12126	n:100000
DHX9   100000 perm   28 sec   (3620 perm/sec)   p_kst 1.212600e-01   p_cons 5.120000e-03   p_joint 1.201000e-02

Joint ci ratio: 1.089706e-01	ci left: 1.099328e-02	ci right 1.226903e-02	k: 1278	n:110000
Cons ci ratio: 1.640536e-01	ci left: 4.739911e-03	ci right 5.595590e-03	k: 567	n:110000
KS ci ratio: 3.183687e-02	ci left: 1.191956e-01	ci right 1.230608e-01	k: 13323	n:110000
DHX9   110000 perm   31 sec   (3531 perm/sec)   p_kst 1.211182e-01   p_cons 5.154545e-03   p_joint 1.161818e-02

Joint ci ratio: 1.082145e-01	ci left: 1.023098e-02	ci right 1.140950e-02	k: 1297	n:120000
Cons ci ratio: 1.563905e-01	ci left: 4.800892e-03	ci right 5.623299e-03	k: 624	n:120000
KS ci ratio: 3.042112e-02	ci left: 1.196979e-01	ci right 1.234037e-01	k: 14585	n:120000
DHX9   120000 perm   34 sec   (3481 perm/sec)   p_kst 1.215417e-01   p_cons 5.200000e-03   p_joint 1.080833e-02

Joint ci ratio: 1.056988e-01	ci left: 9.915549e-03	ci right 1.102953e-02	k: 1360	n:130000
Cons ci ratio: 1.502645e-01	ci left: 4.816252e-03	ci right 5.606066e-03	k: 676	n:130000
KS ci ratio: 2.925244e-02	ci left: 1.195911e-01	ci right 1.231489e-01	k: 15777	n:130000
DHX9   130000 perm   38 sec   (3436 perm/sec)   p_kst 1.213615e-01   p_cons 5.200000e-03   p_joint 1.046154e-02

Joint ci ratio: 1.039786e-01	ci left: 9.527151e-03	ci right 1.057900e-02	k: 1406	n:140000
Cons ci ratio: 1.441123e-01	ci left: 4.878157e-03	ci right 5.642554e-03	k: 735	n:140000
KS ci ratio: 2.817958e-02	ci left: 1.197219e-01	ci right 1.231509e-01	k: 17000	n:140000
DHX9   140000 perm   41 sec   (3392 perm/sec)   p_kst 1.214286e-01   p_cons 5.250000e-03   p_joint 1.004286e-02

Joint ci ratio: 1.022672e-01	ci left: 9.203675e-03	ci right 1.020208e-02	k: 1454	n:150000
Cons ci ratio: 1.396332e-01	ci left: 4.861586e-03	ci right 5.597738e-03	k: 783	n:150000
KS ci ratio: 2.721671e-02	ci left: 1.198374e-01	ci right 1.231506e-01	k: 18223	n:150000
DHX9   150000 perm   45 sec   (3350 perm/sec)   p_kst 1.214867e-01   p_cons 5.220000e-03   p_joint 9.693333e-03

Joint ci ratio: 1.023696e-01	ci left: 8.616131e-03	ci right 9.551788e-03	k: 1452	n:160000
Cons ci ratio: 1.353023e-01	ci left: 4.865526e-03	ci right 5.577584e-03	k: 834	n:160000
KS ci ratio: 2.635937e-02	ci left: 1.198345e-01	ci right 1.230417e-01	k: 19429	n:160000
DHX9   160000 perm   48 sec   (3307 perm/sec)   p_kst 1.214313e-01   p_cons 5.212500e-03   p_joint 9.075000e-03

Joint ci ratio: 9.618125e-02	ci left: 9.210823e-03	ci right 1.014719e-02	k: 1644	n:170000
Cons ci ratio: 1.308324e-01	ci left: 4.909146e-03	ci right 5.602008e-03	k: 892	n:170000
KS ci ratio: 2.558108e-02	ci left: 1.198101e-01	ci right 1.229205e-01	k: 20631	n:170000
DHX9   170000 perm   52 sec   (3256 perm/sec)   p_kst 1.213588e-01   p_cons 5.247059e-03   p_joint 9.670588e-03

Joint ci ratio: 9.959289e-02	ci left: 8.108144e-03	ci right 8.963353e-03	k: 1535	n:180000
Cons ci ratio: 1.271145e-01	ci left: 4.921363e-03	ci right 5.594722e-03	k: 945	n:180000
KS ci ratio: 2.484006e-02	ci left: 1.200272e-01	ci right 1.230517e-01	k: 21876	n:180000
DHX9   180000 perm   56 sec   (3209 perm/sec)   p_kst 1.215333e-01   p_cons 5.250000e-03   p_joint 8.527778e-03

Joint ci ratio: 9.470366e-02	ci left: 8.513407e-03	ci right 9.364835e-03	k: 1697	n:190000
Cons ci ratio: 1.238212e-01	ci left: 4.922341e-03	ci right 5.577105e-03	k: 996	n:190000
KS ci ratio: 2.418612e-02	ci left: 1.199922e-01	ci right 1.229351e-01	k: 23077	n:190000
DHX9   190000 perm   60 sec   (3160 perm/sec)   p_kst 1.214579e-01   p_cons 5.242105e-03   p_joint 8.931579e-03

Joint ci ratio: 9.469690e-02	ci left: 8.092535e-03	ci right 8.901808e-03	k: 1698	n:200000
Cons ci ratio: 1.205402e-01	ci left: 4.942822e-03	ci right 5.581646e-03	k: 1051	n:200000
KS ci ratio: 2.357682e-02	ci left: 1.200015e-01	ci right 1.228695e-01	k: 24286	n:200000
DHX9   200000 perm   64 sec   (3119 perm/sec)   p_kst 1.214300e-01   p_cons 5.255000e-03   p_joint 8.490000e-03

Joint ci ratio: 8.973773e-02	ci left: 8.600486e-03	ci right 9.413153e-03	k: 1890	n:210000
Cons ci ratio: 1.177209e-01	ci left: 4.943070e-03	ci right 5.565944e-03	k: 1102	n:210000
KS ci ratio: 2.299854e-02	ci left: 1.201292e-01	ci right 1.229289e-01	k: 25520	n:210000
DHX9   210000 perm   68 sec   (3073 perm/sec)   p_kst 1.215238e-01   p_cons 5.247619e-03   p_joint 9.000000e-03

Joint ci ratio: 9.019025e-02	ci left: 8.129489e-03	ci right 8.901726e-03	k: 1872	n:220000
Cons ci ratio: 1.151408e-01	ci left: 4.939038e-03	ci right 5.546837e-03	k: 1152	n:220000
KS ci ratio: 2.247326e-02	ci left: 1.201285e-01	ci right 1.228633e-01	k: 26728	n:220000
DHX9   220000 perm   73 sec   (3034 perm/sec)   p_kst 1.214909e-01   p_cons 5.236364e-03   p_joint 8.509091e-03

Joint ci ratio: 8.818820e-02	ci left: 8.141608e-03	ci right 8.896943e-03	k: 1958	n:230000
Cons ci ratio: 1.129595e-01	ci left: 4.914365e-03	ci right 5.506906e-03	k: 1197	n:230000
KS ci ratio: 2.195914e-02	ci left: 1.203535e-01	ci right 1.230300e-01	k: 27988	n:230000
DHX9   230000 perm   77 sec   (2995 perm/sec)   p_kst 1.216870e-01   p_cons 5.204348e-03   p_joint 8.513043e-03

Joint ci ratio: 8.635642e-02	ci left: 8.144736e-03	ci right 8.883874e-03	k: 2042	n:240000
Cons ci ratio: 1.104076e-01	ci left: 4.936418e-03	ci right 5.517296e-03	k: 1253	n:240000
KS ci ratio: 2.147834e-02	ci left: 1.205645e-01	ci right 1.231863e-01	k: 29249	n:240000
DHX9   240000 perm   81 sec   (2959 perm/sec)   p_kst 1.218708e-01   p_cons 5.220833e-03   p_joint 8.508333e-03

Joint ci ratio: 8.483560e-02	ci left: 8.108604e-03	ci right 8.830862e-03	k: 2116	n:250000
Cons ci ratio: 1.086061e-01	ci left: 4.902355e-03	ci right 5.469210e-03	k: 1295	n:250000
KS ci ratio: 2.105255e-02	ci left: 1.205084e-01	ci right 1.230764e-01	k: 30447	n:250000
DHX9   250000 perm   86 sec   (2922 perm/sec)   p_kst 1.217880e-01   p_cons 5.180000e-03   p_joint 8.464000e-03

Joint ci ratio: 8.623616e-02	ci left: 7.544459e-03	ci right 8.228118e-03	k: 2049	n:260000
Cons ci ratio: 1.064907e-01	ci left: 4.908424e-03	ci right 5.464233e-03	k: 1347	n:260000
KS ci ratio: 2.065930e-02	ci left: 1.203729e-01	ci right 1.228894e-01	k: 31623	n:260000
DHX9   260000 perm   90 sec   (2887 perm/sec)   p_kst 1.216269e-01   p_cons 5.180769e-03   p_joint 7.880769e-03

Joint ci ratio: 8.375306e-02	ci left: 7.710935e-03	ci right 8.388577e-03	k: 2172	n:270000
Cons ci ratio: 1.039360e-01	ci left: 4.968256e-03	ci right 5.516520e-03	k: 1414	n:270000
KS ci ratio: 2.027287e-02	ci left: 1.203990e-01	ci right 1.228684e-01	k: 32840	n:270000
DHX9   270000 perm   95 sec   (2854 perm/sec)   p_kst 1.216296e-01   p_cons 5.237037e-03   p_joint 8.044444e-03

Joint ci ratio: 7.980713e-02	ci left: 8.201780e-03	ci right 8.887022e-03	k: 2391	n:280000
Cons ci ratio: 1.023583e-01	ci left: 4.943904e-03	ci right 5.480701e-03	k: 1458	n:280000
KS ci ratio: 1.991433e-02	ci left: 1.203489e-01	ci right 1.227732e-01	k: 34036	n:280000
DHX9   280000 perm   99 sec   (2820 perm/sec)   p_kst 1.215571e-01   p_cons 5.207143e-03   p_joint 8.539286e-03

Joint ci ratio: 8.058686e-02	ci left: 7.766830e-03	ci right 8.422368e-03	k: 2346	n:290000
Cons ci ratio: 1.006151e-01	ci left: 4.944823e-03	ci right 5.472036e-03	k: 1509	n:290000
KS ci ratio: 1.955900e-02	ci left: 1.204675e-01	ci right 1.228504e-01	k: 35280	n:290000
DHX9   290000 perm   104 sec   (2787 perm/sec)   p_kst 1.216552e-01   p_cons 5.203448e-03   p_joint 8.089655e-03

Joint ci ratio: 8.021975e-02	ci left: 7.579765e-03	ci right 8.216463e-03	k: 2368	n:300000
Cons ci ratio: 9.927820e-02	ci left: 4.913242e-03	ci right 5.429721e-03	k: 1550	n:300000
KS ci ratio: 1.923224e-02	ci left: 1.204657e-01	ci right 1.228083e-01	k: 36490	n:300000
DHX9   300000 perm   109 sec   (2754 perm/sec)   p_kst 1.216333e-01   p_cons 5.166667e-03   p_joint 7.893333e-03

Outputting figure to mutsig2_images.part000000000050/DHX9.5_3921_300000_0.12163_0.0051667_0.0078933.png
                gene_name: DHX9
               theta_stop: 0.099 
                    nperm: 300000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.0052 
      ci_cons_bounds_left: 0.0049 
     ci_cons_bounds_right: 0.0054 
                  p_joint: 0.0079 
     ci_joint_bounds_left: 0.0076 
    ci_joint_bounds_right: 0.0082 

Current progress: 23 percent done.
DIAPH3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.917035e-02	ci left: 3.789306e-01	ci right 3.981344e-01	k: 3885	n:10000
Cons ci ratio: 6.822271e-02	ci left: 2.396590e-01	ci right 2.566879e-01	k: 2481	n:10000
KS ci ratio: 5.396524e-02	ci left: 3.359772e-01	ci right 3.547130e-01	k: 3453	n:10000
DIAPH3   10000 perm   2 sec   (4569 perm/sec)   p_kst 3.453000e-01   p_cons 2.481000e-01   p_joint 3.885000e-01

Outputting figure to mutsig2_images.part000000000050/DIAPH3.5_3714_10000_0.3453_0.2481_0.3885.png
                gene_name: DIAPH3
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 26 percent done.
DIP2C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.725901e-02	ci left: 5.154566e-01	ci right 5.351287e-01	k: 5253	n:10000
Cons ci ratio: 7.745522e-02	ci left: 1.959420e-01	ci right 2.118309e-01	k: 2038	n:10000
KS ci ratio: 3.939054e-02	ci left: 4.876522e-01	ci right 5.073492e-01	k: 4975	n:10000
DIP2C   10000 perm   3 sec   (3833 perm/sec)   p_kst 4.975000e-01   p_cons 2.038000e-01   p_joint 5.253000e-01

Outputting figure to mutsig2_images.part000000000050/DIP2C.5_4819_10000_0.4975_0.2038_0.5253.png
                gene_name: DIP2C
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 28 percent done.
DLG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.325932e-02	ci left: 7.308797e-01	ci right 7.481806e-01	k: 7396	n:10000
Cons ci ratio: 6.192151e-02	ci left: 2.771565e-01	ci right 2.949683e-01	k: 2860	n:10000
KS ci ratio: 1.082595e-02	ci left: 9.239968e-01	ci right 9.341516e-01	k: 9292	n:10000
DLG1   10000 perm   2 sec   (4628 perm/sec)   p_kst 9.292000e-01   p_cons 2.860000e-01   p_joint 7.396000e-01

Outputting figure to mutsig2_images.part000000000050/DLG1.5_2919_10000_0.9292_0.286_0.7396.png
                gene_name: DLG1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 30 percent done.
DHRS7C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.400250e-02	ci left: 7.184560e-01	ci right 7.360115e-01	k: 7273	n:10000
Cons ci ratio: 1.436877e-02	ci left: 8.751064e-01	ci right 8.878705e-01	k: 8816	n:10000
KS ci ratio: 3.389067e-02	ci left: 5.624330e-01	ci right 5.819249e-01	k: 5722	n:10000
DHRS7C   10000 perm   2 sec   (5736 perm/sec)   p_kst 5.722000e-01   p_cons 8.816000e-01   p_joint 7.273000e-01

Outputting figure to mutsig2_images.part000000000050/DHRS7C.4_960_10000_0.5722_0.8816_0.7273.png
                gene_name: DHRS7C
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 32 percent done.
DHRSX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.473782e-02	ci left: 3.296208e-01	ci right 3.482731e-01	k: 3389	n:10000
Cons ci ratio: 5.927115e-02	ci left: 2.951909e-01	ci right 3.133232e-01	k: 3042	n:10000
KS ci ratio: 6.560300e-02	ci left: 2.543910e-01	ci right 2.717472e-01	k: 2630	n:10000
DHRSX   10000 perm   2 sec   (5345 perm/sec)   p_kst 2.630000e-01   p_cons 3.042000e-01   p_joint 3.389000e-01

Outputting figure to mutsig2_images.part000000000050/DHRSX.4_1021_10000_0.263_0.3042_0.3389.png
                gene_name: DHRSX
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 34 percent done.
DHX36
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.010744e-02	ci left: 2.893427e-01	ci right 3.073749e-01	k: 2983	n:10000
Cons ci ratio: 9.800946e-02	ci left: 1.311004e-01	ci right 1.447113e-01	k: 1378	n:10000
KS ci ratio: 7.808098e-02	ci left: 1.933804e-01	ci right 2.091940e-01	k: 2012	n:10000
DHX36   10000 perm   2 sec   (4943 perm/sec)   p_kst 2.012000e-01   p_cons 1.378000e-01   p_joint 2.983000e-01

Outputting figure to mutsig2_images.part000000000050/DHX36.4_3127_10000_0.2012_0.1378_0.2983.png
                gene_name: DHX36
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 36 percent done.
DHX37
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.688045e-02	ci left: 8.363308e-01	ci right 8.506684e-01	k: 8436	n:10000
Cons ci ratio: 6.096528e-02	ci left: 2.834963e-01	ci right 3.014247e-01	k: 2924	n:10000
KS ci ratio: 2.686446e-02	ci left: 6.711587e-01	ci right 6.895361e-01	k: 6804	n:10000
DHX37   10000 perm   2 sec   (4831 perm/sec)   p_kst 6.804000e-01   p_cons 2.924000e-01   p_joint 8.436000e-01

Outputting figure to mutsig2_images.part000000000050/DHX37.4_3582_10000_0.6804_0.2924_0.8436.png
                gene_name: DHX37
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 38 percent done.
DIAPH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.417193e-02	ci left: 7.156290e-01	ci right 7.332401e-01	k: 7245	n:10000
Cons ci ratio: 1.628172e-02	ci left: 8.458050e-01	ci right 8.597888e-01	k: 8529	n:10000
KS ci ratio: 3.007054e-02	ci left: 6.199480e-01	ci right 6.389766e-01	k: 6295	n:10000
DIAPH2   10000 perm   2 sec   (4590 perm/sec)   p_kst 6.295000e-01   p_cons 8.529000e-01   p_joint 7.245000e-01

Outputting figure to mutsig2_images.part000000000050/DIAPH2.4_3468_10000_0.6295_0.8529_0.7245.png
                gene_name: DIAPH2
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 40 percent done.
DIRC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.231239e-02	ci left: 3.500871e-01	ci right 3.689948e-01	k: 3595	n:10000
Cons ci ratio: 1.063518e-01	ci left: 1.132038e-01	ci right 1.260187e-01	k: 1195	n:10000
KS ci ratio: 4.418895e-02	ci left: 4.305389e-01	ci right 4.500959e-01	k: 4403	n:10000
DIRC2   10000 perm   2 sec   (5443 perm/sec)   p_kst 4.403000e-01   p_cons 1.195000e-01   p_joint 3.595000e-01

Joint ci ratio: 5.340739e-02	ci left: 2.065012e-01	ci right 2.178826e-01	k: 4243	n:20000
Cons ci ratio: 7.651740e-02	ci left: 1.115439e-01	ci right 1.204681e-01	k: 2319	n:20000
KS ci ratio: 3.196929e-02	ci left: 4.222262e-01	ci right 4.359944e-01	k: 8582	n:20000
DIRC2   20000 perm   4 sec   (4898 perm/sec)   p_kst 4.291000e-01   p_cons 1.159500e-01   p_joint 2.121500e-01

Outputting figure to mutsig2_images.part000000000050/DIRC2.4_1473_20000_0.4291_0.11595_0.21215.png
                gene_name: DIRC2
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 43 percent done.
DIS3L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.055019e-01	ci left: 1.148645e-01	ci right 1.277571e-01	k: 1212	n:10000
Cons ci ratio: 1.557042e-01	ci left: 5.494237e-02	ci right 6.431621e-02	k: 595	n:10000
KS ci ratio: 4.072890e-02	ci left: 4.709642e-01	ci right 4.906470e-01	k: 4808	n:10000
DIS3L   10000 perm   2 sec   (4984 perm/sec)   p_kst 4.808000e-01   p_cons 5.950000e-02   p_joint 1.212000e-01

Joint ci ratio: 5.384246e-02	ci left: 2.038281e-01	ci right 2.151565e-01	k: 4189	n:20000
Cons ci ratio: 1.074889e-01	ci left: 5.898909e-02	ci right 6.573884e-02	k: 1246	n:20000
KS ci ratio: 2.809882e-02	ci left: 4.861976e-01	ci right 5.001044e-01	k: 9863	n:20000
DIS3L   20000 perm   5 sec   (4399 perm/sec)   p_kst 4.931500e-01   p_cons 6.230000e-02   p_joint 2.094500e-01

Joint ci ratio: 6.335513e-02	ci left: 1.095699e-01	ci right 1.167719e-01	k: 3394	n:30000
Cons ci ratio: 8.553125e-02	ci left: 6.262789e-02	ci right 6.825662e-02	k: 1962	n:30000
KS ci ratio: 2.305128e-02	ci left: 4.851275e-01	ci right 4.964743e-01	k: 14724	n:30000
DIS3L   30000 perm   7 sec   (4244 perm/sec)   p_kst 4.908000e-01   p_cons 6.540000e-02   p_joint 1.131333e-01

Outputting figure to mutsig2_images.part000000000050/DIS3L.4_3233_30000_0.4908_0.0654_0.11313.png
                gene_name: DIS3L
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.065 
      ci_cons_bounds_left: 0.063 
     ci_cons_bounds_right: 0.068 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 45 percent done.
DKK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.131817e-01	ci left: 1.010066e-01	ci right 1.132234e-01	k: 1070	n:10000
Cons ci ratio: 4.577464e-02	ci left: 4.132907e-01	ci right 4.327542e-01	k: 4230	n:10000
KS ci ratio: 1.304623e-01	ci left: 7.737381e-02	ci right 8.827067e-02	k: 827	n:10000
DKK1   10000 perm   1 sec   (6939 perm/sec)   p_kst 8.270000e-02   p_cons 4.230000e-01   p_joint 1.070000e-01

Joint ci ratio: 8.990531e-02	ci left: 8.288439e-02	ci right 9.073622e-02	k: 1735	n:20000
Cons ci ratio: 3.199867e-02	ci left: 4.217772e-01	ci right 4.355436e-01	k: 8573	n:20000
KS ci ratio: 9.177018e-02	ci left: 7.975078e-02	ci right 8.747079e-02	k: 1671	n:20000
DKK1   20000 perm   3 sec   (6020 perm/sec)   p_kst 8.355000e-02   p_cons 4.286500e-01   p_joint 8.675000e-02

Outputting figure to mutsig2_images.part000000000050/DKK1.4_817_20000_0.08355_0.42865_0.08675.png
                gene_name: DKK1
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.084 
        ci_ks_bounds_left: 0.080 
       ci_ks_bounds_right: 0.087 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.087 
     ci_joint_bounds_left: 0.083 
    ci_joint_bounds_right: 0.091 

Current progress: 47 percent done.
DLEC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.922651e-02	ci left: 7.982126e-01	ci right 8.138088e-01	k: 8061	n:10000
KS ci ratio: 2.050319e-02	ci left: 7.770183e-01	ci right 7.932153e-01	k: 7852	n:10000
DLEC1   10000 perm   2 sec   (4012 perm/sec)   p_kst 7.852000e-01   p_cons 8.061000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000050/DLEC1.4_5609_10000_0.7852_0.8061_1.png
                gene_name: DLEC1
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 49 percent done.
DLG5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.612086e-02	ci left: 2.015594e-01	ci right 2.176102e-01	k: 2095	n:10000
Cons ci ratio: 1.296109e-01	ci left: 7.834394e-02	ci right 8.929994e-02	k: 837	n:10000
KS ci ratio: 3.162458e-02	ci left: 5.960420e-01	ci right 6.152964e-01	k: 6057	n:10000
DLG5   10000 perm   2 sec   (4043 perm/sec)   p_kst 6.057000e-01   p_cons 8.370000e-02   p_joint 2.095000e-01

Joint ci ratio: 4.684764e-02	ci left: 2.531870e-01	ci right 2.653831e-01	k: 5185	n:20000
Cons ci ratio: 9.073774e-02	ci left: 8.146427e-02	ci right 8.925677e-02	k: 1706	n:20000
KS ci ratio: 2.227663e-02	ci left: 6.007425e-01	ci right 6.143263e-01	k: 12151	n:20000
DLG5   20000 perm   5 sec   (3660 perm/sec)   p_kst 6.075500e-01   p_cons 8.530000e-02   p_joint 2.592500e-01

Outputting figure to mutsig2_images.part000000000050/DLG5.4_5888_20000_0.60755_0.0853_0.25925.png
                gene_name: DLG5
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.085 
      ci_cons_bounds_left: 0.081 
     ci_cons_bounds_right: 0.089 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 51 percent done.
DLGAP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.661395e-02	ci left: 1.625864e-01	ci right 1.774064e-01	k: 1699	n:10000
Cons ci ratio: 4.234563e-02	ci left: 4.515919e-01	ci right 4.712306e-01	k: 4614	n:10000
KS ci ratio: 1.171404e-01	ci left: 9.477139e-02	ci right 1.066624e-01	k: 1006	n:10000
DLGAP3   10000 perm   2 sec   (5097 perm/sec)   p_kst 1.006000e-01   p_cons 4.614000e-01   p_joint 1.699000e-01

Joint ci ratio: 5.586451e-02	ci left: 1.920018e-01	ci right 2.030863e-01	k: 3950	n:20000
Cons ci ratio: 2.920883e-02	ci left: 4.668592e-01	ci right 4.807484e-01	k: 9476	n:20000
KS ci ratio: 8.244601e-02	ci left: 9.734785e-02	ci right 1.057684e-01	k: 2030	n:20000
DLGAP3   20000 perm   4 sec   (4512 perm/sec)   p_kst 1.015000e-01   p_cons 4.738000e-01   p_joint 1.975000e-01

Outputting figure to mutsig2_images.part000000000050/DLGAP3.4_2980_20000_0.1015_0.4738_0.1975.png
                gene_name: DLGAP3
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.097 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 53 percent done.
DLGAP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.723519e-02	ci left: 3.100670e-01	ci right 3.284384e-01	k: 3192	n:10000
Cons ci ratio: 1.170758e-01	ci left: 9.486876e-02	ci right 1.067649e-01	k: 1007	n:10000
KS ci ratio: 1.851635e-02	ci left: 8.098890e-01	ci right 8.251256e-01	k: 8176	n:10000
DLGAP5   10000 perm   2 sec   (4869 perm/sec)   p_kst 8.176000e-01   p_cons 1.007000e-01   p_joint 3.192000e-01

Joint ci ratio: 4.587388e-02	ci left: 2.612751e-01	ci right 2.735926e-01	k: 5348	n:20000
Cons ci ratio: 8.135796e-02	ci left: 9.975307e-02	ci right 1.082624e-01	k: 2079	n:20000
KS ci ratio: 1.294978e-02	ci left: 8.154639e-01	ci right 8.261427e-01	k: 16417	n:20000
DLGAP5   20000 perm   5 sec   (4301 perm/sec)   p_kst 8.208500e-01   p_cons 1.039500e-01   p_joint 2.674000e-01

Outputting figure to mutsig2_images.part000000000050/DLGAP5.4_2708_20000_0.82085_0.10395_0.2674.png
                gene_name: DLGAP5
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.100 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 55 percent done.
DHRS4L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.545513e-02	ci left: 1.373691e-01	ci right 1.512388e-01	k: 1442	n:10000
Cons ci ratio: 1.340238e-01	ci left: 7.349567e-02	ci right 8.415122e-02	k: 787	n:10000
KS ci ratio: 4.064743e-02	ci left: 4.719632e-01	ci right 4.916474e-01	k: 4818	n:10000
DHRS4L1   10000 perm   2 sec   (5899 perm/sec)   p_kst 4.818000e-01   p_cons 7.870000e-02   p_joint 1.442000e-01

Joint ci ratio: 7.092353e-02	ci left: 1.277807e-01	ci right 1.372264e-01	k: 2649	n:20000
Cons ci ratio: 9.496748e-02	ci left: 7.476008e-02	ci right 8.226301e-02	k: 1569	n:20000
KS ci ratio: 2.882792e-02	ci left: 4.734041e-01	ci right 4.873016e-01	k: 9607	n:20000
DHRS4L1   20000 perm   4 sec   (5200 perm/sec)   p_kst 4.803500e-01   p_cons 7.845000e-02   p_joint 1.324500e-01

Outputting figure to mutsig2_images.part000000000050/DHRS4L1.3_886_20000_0.48035_0.07845_0.13245.png
                gene_name: DHRS4L1
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.078 
      ci_cons_bounds_left: 0.075 
     ci_cons_bounds_right: 0.082 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 57 percent done.
DHX15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.236025e-02	ci left: 7.459413e-01	ci right 7.629103e-01	k: 7545	n:10000
KS ci ratio: 2.703135e-02	ci left: 6.684392e-01	ci right 6.868572e-01	k: 6777	n:10000
DHX15   10000 perm   2 sec   (5550 perm/sec)   p_kst 6.777000e-01   p_cons 7.545000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000050/DHX15.3_2444_10000_0.6777_0.7545_1.png
                gene_name: DHX15
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 60 percent done.
DISC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.380780e-02	ci left: 2.651762e-01	ci right 2.827556e-01	k: 2739	n:10000
Cons ci ratio: 1.528606e-01	ci left: 5.696592e-02	ci right 6.649137e-02	k: 616	n:10000
KS ci ratio: 1.917116e-02	ci left: 7.991260e-01	ci right 8.146948e-01	k: 8070	n:10000
DISC1   10000 perm   2 sec   (4852 perm/sec)   p_kst 8.070000e-01   p_cons 6.160000e-02   p_joint 2.739000e-01

Joint ci ratio: 6.033964e-02	ci left: 1.689662e-01	ci right 1.795287e-01	k: 3484	n:20000
Cons ci ratio: 1.147282e-01	ci left: 5.197757e-02	ci right 5.835254e-02	k: 1102	n:20000
KS ci ratio: 1.372518e-02	ci left: 7.975200e-01	ci right 8.085918e-01	k: 16062	n:20000
DISC1   20000 perm   5 sec   (4359 perm/sec)   p_kst 8.031000e-01   p_cons 5.510000e-02   p_joint 1.742000e-01

Joint ci ratio: 5.683431e-02	ci left: 1.329630e-01	ci right 1.407741e-01	k: 4105	n:30000
Cons ci ratio: 9.339243e-02	ci left: 5.287047e-02	ci right 5.808270e-02	k: 1663	n:30000
KS ci ratio: 1.131031e-02	ci left: 7.955961e-01	ci right 8.046790e-01	k: 24005	n:30000
DISC1   30000 perm   7 sec   (4198 perm/sec)   p_kst 8.001667e-01   p_cons 5.543333e-02   p_joint 1.368333e-01

Outputting figure to mutsig2_images.part000000000050/DISC1.3_3458_30000_0.80017_0.055433_0.13683.png
                gene_name: DISC1
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.055 
      ci_cons_bounds_left: 0.053 
     ci_cons_bounds_right: 0.058 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 62 percent done.
DISP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.963746e-02	ci left: 7.914146e-01	ci right 8.072106e-01	k: 7994	n:10000
Cons ci ratio: 5.078065e-02	ci left: 3.638081e-01	ci right 3.828658e-01	k: 3733	n:10000
KS ci ratio: 2.342837e-02	ci left: 7.280508e-01	ci right 7.454111e-01	k: 7368	n:10000
DISP2   10000 perm   2 sec   (4398 perm/sec)   p_kst 7.368000e-01   p_cons 3.733000e-01   p_joint 7.994000e-01

Outputting figure to mutsig2_images.part000000000050/DISP2.3_4238_10000_0.7368_0.3733_0.7994.png
                gene_name: DISP2
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 64 percent done.
DLK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.556943e-02	ci left: 6.924235e-01	ci right 7.104591e-01	k: 7015	n:10000
KS ci ratio: 2.540473e-02	ci left: 6.951461e-01	ci right 7.131348e-01	k: 7042	n:10000
DLK1   10000 perm   2 sec   (6247 perm/sec)   p_kst 7.042000e-01   p_cons 7.015000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000050/DLK1.3_1172_10000_0.7042_0.7015_1.png
                gene_name: DLK1
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 66 percent done.
DHRS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.623708e-02	ci left: 4.084076e-01	ci right 4.278402e-01	k: 4181	n:10000
Cons ci ratio: 6.167987e-02	ci left: 2.787412e-01	ci right 2.965826e-01	k: 2876	n:10000
KS ci ratio: 5.723519e-02	ci left: 3.100670e-01	ci right 3.284384e-01	k: 3192	n:10000
DHRS2   10000 perm   2 sec   (6543 perm/sec)   p_kst 3.192000e-01   p_cons 2.876000e-01   p_joint 4.181000e-01

Outputting figure to mutsig2_images.part000000000050/DHRS2.2_935_10000_0.3192_0.2876_0.4181.png
                gene_name: DHRS2
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 68 percent done.
DHX16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.254102e-01	ci left: 8.339227e-02	ci right 9.464849e-02	k: 889	n:10000
Cons ci ratio: 1.767305e-02	ci left: 8.236106e-01	ci right 8.383961e-01	k: 8311	n:10000
KS ci ratio: 1.458093e-01	ci left: 6.246605e-02	ci right 7.238775e-02	k: 673	n:10000
DHX16   10000 perm   2 sec   (5222 perm/sec)   p_kst 6.730000e-02   p_cons 8.311000e-01   p_joint 8.890000e-02

Joint ci ratio: 1.863729e-02	ci left: 6.821806e-01	ci right 6.950646e-01	k: 13773	n:20000
Cons ci ratio: 1.292556e-02	ci left: 8.160202e-01	ci right 8.266862e-01	k: 16428	n:20000
KS ci ratio: 1.004535e-01	ci left: 6.718520e-02	ci right 7.434020e-02	k: 1414	n:20000
DHX16   20000 perm   4 sec   (4641 perm/sec)   p_kst 7.070000e-02   p_cons 8.214000e-01   p_joint 6.886500e-01

Joint ci ratio: 4.489011e-02	ci left: 1.980971e-01	ci right 2.072272e-01	k: 6079	n:30000
Cons ci ratio: 1.044190e-02	ci left: 8.201475e-01	ci right 8.287896e-01	k: 24735	n:30000
KS ci ratio: 8.358858e-02	ci left: 6.543802e-02	ci right 7.117926e-02	k: 2048	n:30000
DHX16   30000 perm   7 sec   (4417 perm/sec)   p_kst 6.826667e-02   p_cons 8.245000e-01   p_joint 2.026333e-01

Outputting figure to mutsig2_images.part000000000050/DHX16.2_3237_30000_0.068267_0.8245_0.20263.png
                gene_name: DHX16
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.068 
        ci_ks_bounds_left: 0.065 
       ci_ks_bounds_right: 0.071 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 70 percent done.
DHX30
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.391342e-03	ci left: 9.853418e-01	ci right 9.897674e-01	k: 9877	n:10000
Cons ci ratio: 7.148439e-03	ci left: 9.642561e-01	ci right 9.712679e-01	k: 9679	n:10000
KS ci ratio: 7.929105e-02	ci left: 1.885544e-01	ci right 2.042229e-01	k: 1963	n:10000
DHX30   10000 perm   2 sec   (5064 perm/sec)   p_kst 1.963000e-01   p_cons 9.679000e-01   p_joint 9.877000e-01

Outputting figure to mutsig2_images.part000000000050/DHX30.2_3676_10000_0.1963_0.9679_0.9877.png
                gene_name: DHX30
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 72 percent done.
DHX32
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.637241e-02	ci left: 8.443782e-01	ci right 8.584164e-01	k: 8515	n:10000
KS ci ratio: 3.257287e-02	ci left: 5.817902e-01	ci right 6.011565e-01	k: 5915	n:10000
DHX32   10000 perm   2 sec   (5962 perm/sec)   p_kst 5.915000e-01   p_cons 8.515000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000050/DHX32.2_2276_10000_0.5915_0.8515_1.png
                gene_name: DHX32
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 74 percent done.
DHX34
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.435137e-02	ci left: 2.093488e-01	ci right 2.256161e-01	k: 2174	n:10000
Cons ci ratio: 3.809659e-02	ci left: 5.043512e-01	ci right 5.240405e-01	k: 5142	n:10000
KS ci ratio: 1.541967e-01	ci left: 5.600212e-02	ci right 6.545578e-02	k: 606	n:10000
DHX34   10000 perm   2 sec   (4915 perm/sec)   p_kst 6.060000e-02   p_cons 5.142000e-01   p_joint 2.174000e-01

Joint ci ratio: 2.630834e-02	ci left: 5.191015e-01	ci right 5.329909e-01	k: 10521	n:20000
Cons ci ratio: 2.586589e-02	ci left: 5.275574e-01	ci right 5.414326e-01	k: 10690	n:20000
KS ci ratio: 1.074430e-01	ci left: 5.903783e-02	ci right 6.579008e-02	k: 1247	n:20000
DHX34   20000 perm   5 sec   (4437 perm/sec)   p_kst 6.235000e-02   p_cons 5.345000e-01   p_joint 5.260500e-01

Joint ci ratio: 3.912675e-02	ci left: 2.457701e-01	ci right 2.556116e-01	k: 7520	n:30000
Cons ci ratio: 2.165772e-02	ci left: 5.162956e-01	ci right 5.276334e-01	k: 15659	n:30000
KS ci ratio: 8.848614e-02	ci left: 5.867675e-02	ci right 6.414190e-02	k: 1841	n:30000
DHX34   30000 perm   7 sec   (4249 perm/sec)   p_kst 6.136667e-02   p_cons 5.219667e-01   p_joint 2.506667e-01

Outputting figure to mutsig2_images.part000000000050/DHX34.2_3496_30000_0.061367_0.52197_0.25067.png
                gene_name: DHX34
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.061 
        ci_ks_bounds_left: 0.059 
       ci_ks_bounds_right: 0.064 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 77 percent done.
DHX35
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.722914e-02	ci left: 5.158568e-01	ci right 5.355282e-01	k: 5257	n:10000
KS ci ratio: 2.252227e-01	ci left: 2.608227e-02	ci right 3.279558e-02	k: 293	n:10000
DHX35   10000 perm   2 sec   (5516 perm/sec)   p_kst 2.930000e-02   p_cons 5.257000e-01   p_joint 1

Joint ci ratio: 1.595400e-01	ci left: 2.695830e-02	ci right 3.167987e-02	k: 585	n:20000
Cons ci ratio: 2.630043e-02	ci left: 5.192516e-01	ci right 5.331408e-01	k: 10524	n:20000
KS ci ratio: 1.595400e-01	ci left: 2.695830e-02	ci right 3.167987e-02	k: 585	n:20000
DHX35   20000 perm   4 sec   (4944 perm/sec)   p_kst 2.925000e-02   p_cons 5.262000e-01   p_joint 2.925000e-02

Joint ci ratio: 1.281768e-01	ci left: 2.829237e-02	ci right 3.219931e-02	k: 906	n:30000
Cons ci ratio: 2.145032e-02	ci left: 5.210978e-01	ci right 5.324303e-01	k: 15803	n:30000
KS ci ratio: 1.281768e-01	ci left: 2.829237e-02	ci right 3.219931e-02	k: 906	n:30000
DHX35   30000 perm   6 sec   (4729 perm/sec)   p_kst 3.020000e-02   p_cons 5.267667e-01   p_joint 3.020000e-02

Joint ci ratio: 1.108316e-01	ci left: 2.864186e-02	ci right 3.202677e-02	k: 1212	n:40000
Cons ci ratio: 1.868382e-02	ci left: 5.189916e-01	ci right 5.288049e-01	k: 20956	n:40000
KS ci ratio: 1.108316e-01	ci left: 2.864186e-02	ci right 3.202677e-02	k: 1212	n:40000
DHX35   40000 perm   9 sec   (4468 perm/sec)   p_kst 3.030000e-02   p_cons 5.239000e-01   p_joint 3.030000e-02

Joint ci ratio: 9.857096e-02	ci left: 2.914670e-02	ci right 3.218812e-02	k: 1532	n:50000
Cons ci ratio: 1.673960e-02	ci left: 5.186708e-01	ci right 5.274465e-01	k: 26153	n:50000
KS ci ratio: 9.857096e-02	ci left: 2.914670e-02	ci right 3.218812e-02	k: 1532	n:50000
DHX35   50000 perm   12 sec   (4319 perm/sec)   p_kst 3.064000e-02   p_cons 5.230600e-01   p_joint 3.064000e-02

Outputting figure to mutsig2_images.part000000000050/DHX35.2_2200_50000_0.03064_0.52306_0.03064.png
                gene_name: DHX35
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.031 
     ci_joint_bounds_left: 0.029 
    ci_joint_bounds_right: 0.032 

Current progress: 79 percent done.
DHX38
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.054571e-02	ci left: 7.763090e-01	ci right 7.925250e-01	k: 7845	n:10000
Cons ci ratio: 9.055796e-02	ci left: 1.506072e-01	ci right 1.649928e-01	k: 1577	n:10000
KS ci ratio: 1.855993e-01	ci left: 3.872553e-02	ci right 4.674361e-02	k: 426	n:10000
DHX38   10000 perm   2 sec   (4965 perm/sec)   p_kst 4.260000e-02   p_cons 1.577000e-01   p_joint 7.845000e-01

Joint ci ratio: 9.150171e-02	ci left: 8.019134e-02	ci right 8.793009e-02	k: 1680	n:20000
Cons ci ratio: 5.885224e-02	ci left: 1.761799e-01	ci right 1.869129e-01	k: 3630	n:20000
KS ci ratio: 1.317256e-01	ci left: 3.960069e-02	ci right 4.523332e-02	k: 847	n:20000
DHX38   20000 perm   5 sec   (4340 perm/sec)   p_kst 4.235000e-02   p_cons 1.815000e-01   p_joint 8.400000e-02

Joint ci ratio: 7.532452e-02	ci left: 7.967266e-02	ci right 8.594175e-02	k: 2483	n:30000
Cons ci ratio: 4.829954e-02	ci left: 1.756671e-01	ci right 1.843950e-01	k: 5400	n:30000
KS ci ratio: 1.086744e-01	ci left: 3.930342e-02	ci right 4.385257e-02	k: 1246	n:30000
DHX38   30000 perm   7 sec   (4141 perm/sec)   p_kst 4.153333e-02   p_cons 1.800000e-01   p_joint 8.276667e-02

Joint ci ratio: 1.864547e-02	ci left: 5.200170e-01	ci right 5.298294e-01	k: 20997	n:40000
Cons ci ratio: 4.196500e-02	ci left: 1.753037e-01	ci right 1.828429e-01	k: 7162	n:40000
KS ci ratio: 9.369455e-02	ci left: 3.995732e-02	ci right 4.390953e-02	k: 1676	n:40000
DHX38   40000 perm   10 sec   (4048 perm/sec)   p_kst 4.190000e-02   p_cons 1.790500e-01   p_joint 5.249250e-01

Outputting figure to mutsig2_images.part000000000050/DHX38.2_3788_40000_0.0419_0.17905_0.52492.png
                gene_name: DHX38
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.042 
        ci_ks_bounds_left: 0.040 
       ci_ks_bounds_right: 0.044 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.53 

Current progress: 81 percent done.
DHX57
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.149518e-02	ci left: 4.616756e-01	ci right 4.813410e-01	k: 4715	n:10000
KS ci ratio: 8.558480e-02	ci left: 1.659274e-01	ci right 1.808634e-01	k: 1733	n:10000
DHX57   10000 perm   2 sec   (4733 perm/sec)   p_kst 1.733000e-01   p_cons 4.715000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000050/DHX57.2_4253_10000_0.1733_0.4715_1.png
                gene_name: DHX57
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
DHX8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.021289e-03	ci left: 9.654135e-01	ci right 9.723098e-01	k: 9690	n:10000
KS ci ratio: 4.391215e-02	ci left: 4.336308e-01	ci right 4.532021e-01	k: 4434	n:10000
DHX8   10000 perm   2 sec   (4947 perm/sec)   p_kst 4.434000e-01   p_cons 9.690000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000050/DHX8.2_3755_10000_0.4434_0.969_1.png
                gene_name: DHX8
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 85 percent done.
DIO2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.989677e-02	ci left: 6.226615e-01	ci right 6.416614e-01	k: 6322	n:10000
Cons ci ratio: 6.811321e-02	ci left: 2.402520e-01	ci right 2.572946e-01	k: 2487	n:10000
KS ci ratio: 3.597900e-02	ci left: 5.328747e-01	ci right 5.525004e-01	k: 5427	n:10000
DIO2   10000 perm   2 sec   (6570 perm/sec)   p_kst 5.427000e-01   p_cons 2.487000e-01   p_joint 6.322000e-01

Outputting figure to mutsig2_images.part000000000050/DIO2.2_942_10000_0.5427_0.2487_0.6322.png
                gene_name: DIO2
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 87 percent done.
DIO3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.769032e-01	ci left: 4.264711e-02	ci right 5.101943e-02	k: 467	n:10000
KS ci ratio: 1.350873e-02	ci left: 8.876989e-01	ci right 8.998707e-01	k: 8939	n:10000
DIO3   10000 perm   2 sec   (6554 perm/sec)   p_kst 8.939000e-01   p_cons 4.670000e-02   p_joint 1

Joint ci ratio: 2.409819e-02	ci left: 5.626031e-01	ci right 5.763767e-01	k: 11390	n:20000
Cons ci ratio: 1.248824e-01	ci left: 4.401091e-02	ci right 4.992170e-02	k: 938	n:20000
KS ci ratio: 9.603609e-03	ci left: 8.884811e-01	ci right 8.971043e-01	k: 17857	n:20000
DIO3   20000 perm   4 sec   (5654 perm/sec)   p_kst 8.928500e-01   p_cons 4.690000e-02   p_joint 5.695000e-01

Joint ci ratio: 6.259873e-02	ci left: 1.119696e-01	ci right 1.192383e-01	k: 3467	n:30000
Cons ci ratio: 1.016454e-01	ci left: 4.482757e-02	ci right 4.966060e-02	k: 1416	n:30000
KS ci ratio: 7.836193e-03	ci left: 8.894135e-01	ci right 8.964435e-01	k: 26789	n:30000
DIO3   30000 perm   6 sec   (5327 perm/sec)   p_kst 8.929667e-01   p_cons 4.720000e-02   p_joint 1.155667e-01

Joint ci ratio: 9.799510e-05	ci left: 9.999078e-01	ci right 1	k: 40000	n:40000
Cons ci ratio: 8.833088e-02	ci left: 4.484853e-02	ci right 4.901756e-02	k: 1876	n:40000
KS ci ratio: 6.763694e-03	ci left: 8.905371e-01	ci right 8.966056e-01	k: 35744	n:40000
DIO3   40000 perm   8 sec   (5114 perm/sec)   p_kst 8.936000e-01   p_cons 4.690000e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000050/DIO3.2_919_40000_0.8936_0.0469_1.png
                gene_name: DIO3
               theta_stop: 0.088 
                    nperm: 40000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.047 
      ci_cons_bounds_left: 0.045 
     ci_cons_bounds_right: 0.049 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
DIRC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.414772e-02	ci left: 7.160328e-01	ci right 7.336360e-01	k: 7249	n:10000
KS ci ratio: 6.698429e-02	ci left: 2.464796e-01	ci right 2.636633e-01	k: 2550	n:10000
DIRC1   10000 perm   1 sec   (7517 perm/sec)   p_kst 2.550000e-01   p_cons 7.249000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000050/DIRC1.2_319_10000_0.255_0.7249_1.png
                gene_name: DIRC1
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
DIXDC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.167040e-02	ci left: 4.595787e-01	ci right 4.792392e-01	k: 4694	n:10000
Cons ci ratio: 3.134726e-02	ci left: 6.002590e-01	ci right 6.194770e-01	k: 6099	n:10000
KS ci ratio: 7.006293e-02	ci left: 2.299769e-01	ci right 2.467758e-01	k: 2383	n:10000
DIXDC1   10000 perm   2 sec   (5678 perm/sec)   p_kst 2.383000e-01   p_cons 6.099000e-01   p_joint 4.694000e-01

Outputting figure to mutsig2_images.part000000000050/DIXDC1.2_2158_10000_0.2383_0.6099_0.4694.png
                gene_name: DIXDC1
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 94 percent done.
DLD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.663683e-02	ci left: 8.402009e-01	ci right 8.543961e-01	k: 8474	n:10000
Cons ci ratio: 1.699539e-02	ci left: 8.344982e-01	ci right 8.489022e-01	k: 8418	n:10000
KS ci ratio: 1.991251e-02	ci left: 7.868508e-01	ci right 8.027771e-01	k: 7949	n:10000
DLD   10000 perm   2 sec   (6063 perm/sec)   p_kst 7.949000e-01   p_cons 8.418000e-01   p_joint 8.474000e-01

Outputting figure to mutsig2_images.part000000000050/DLD.2_1586_10000_0.7949_0.8418_0.8474.png
                gene_name: DLD
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 96 percent done.
DLGAP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.747785e-02	ci left: 6.611889e-01	ci right 6.797117e-01	k: 6705	n:10000
KS ci ratio: 2.027820e-02	ci left: 7.807680e-01	ci right 7.968634e-01	k: 7889	n:10000
DLGAP4   10000 perm   2 sec   (5036 perm/sec)   p_kst 7.889000e-01   p_cons 6.705000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000050/DLGAP4.2_3142_10000_0.7889_0.6705_1.png
                gene_name: DLGAP4
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
DLX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.545556e-02	ci left: 8.586563e-01	ci right 8.721300e-01	k: 8655	n:10000
KS ci ratio: 1.901106e-02	ci left: 8.017651e-01	ci right 8.172541e-01	k: 8096	n:10000
DLX2   10000 perm   2 sec   (6086 perm/sec)   p_kst 8.096000e-01   p_cons 8.655000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000050/DLX2.2_999_10000_0.8096_0.8655_1.png
                gene_name: DLX2
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000050
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 50 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1554>
Subject: Job 8004020: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1554>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000051> was used as the working directory.
Started at Sun Nov 11 15:05:21 2012
Results reported at Sun Nov 11 16:00:09 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000051.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000051.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 51  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000051.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   3651.25 sec.
    Max Memory :      4833 MB
    Max Swap   :      7089 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
51
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 51
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 51: processing genes 4525 - 4614
Calculating significance of each gene.
Using projection method.
4525	DLX5	1.605610e-02
4526	DLX6	3.628550e-01
4527	DMAP1	7.233445e-01
4528	DMBT1	9.979878e-01
4529	DMBX1	5.110579e-01
4530	DMC1	6.979567e-01
4531	DMD	6.268354e-01
4532	DMGDH	7.554834e-01
4533	DMKN	4.730243e-01
4534	DMP1	6.408237e-01
4535	DMPK	8.202102e-01
4536	DMRT1	3.499019e-02
4537	DMRT2	8.298123e-01
4538	DMRT3	1
4539	DMRTA1	4.228050e-01
4540	DMRTA2	1
4541	DMRTB1	1
4542	DMRTC2	5.635779e-01
4543	DMTF1	8.332546e-01
4544	DMWD	7.410917e-01
4545	DMXL1	9.993245e-01
4546	DMXL2	9.434686e-01
4547	DNA2	9.392058e-01
4548	DNAH1	1
4549	DNAH10	9.574532e-01
4550	DNAH11	9.894834e-01
4551	DNAH17	1.000000e+00
4552	DNAH2	9.999999e-01
4553	DNAH3	9.999999e-01
4554	DNAH5	1
4555	DNAH7	1
4556	DNAH8	8.650049e-01
4557	DNAH9	6.096136e-01
4558	DNAI1	4.265316e-02
4559	DNAI2	2.783611e-01
4560	DNAJA1	1
4561	DNAJA2	1
4562	DNAJA3	1
4563	DNAJA4	8.561106e-01
4564	DNAJB1	8.207428e-02
4565	DNAJB11	7.649359e-01
4566	DNAJB12	1
4567	DNAJB13	3.324244e-01
4568	DNAJB14	1
4569	DNAJB2	5.987257e-01
4570	DNAJB3	1
4571	DNAJB4	4.588373e-01
4572	DNAJB5	4.910635e-01
4573	DNAJB6	1
4574	DNAJB7	1
4575	DNAJB8	1
4576	DNAJB9	1.506341e-01
4577	DNAJC1	4.554132e-01
4578	DNAJC10	6.805054e-01
4579	DNAJC11	8.848451e-01
4580	DNAJC12	1
4581	DNAJC13	9.997161e-01
4582	DNAJC14	6.924139e-01
4583	DNAJC15	1
4584	DNAJC16	9.541040e-01
4585	DNAJC17	1
4586	DNAJC18	1
4587	DNAJC19	1
4588	DNAJC2	1
4589	DNAJC21	8.814193e-01
4590	DNAJC22	1
4591	DNAJC24	1
4592	DNAJC25	1
4593	DNAJC25-GNG10	1
4594	DNAJC27	5.346754e-01
4595	DNAJC28	5.926166e-01
4596	DNAJC3	1
4597	DNAJC30	4.954243e-01
4598	DNAJC4	4.965563e-01
4599	DNAJC5	1
4600	DNAJC5B	1
4601	DNAJC5G	2.356330e-01
4602	DNAJC6	1.353255e-01
4603	DNAJC7	6.875414e-01
4604	DNAJC8	1
4605	DNAJC9	1
4606	DNAL1	1
4607	DNAL4	1
4608	DNALI1	1
4609	DNASE1	1
4610	DNASE1L1	2.221282e-01
4611	DNASE1L2	1
4612	DNASE1L3	1
4613	DNASE2	7.810172e-01
4614	DNASE2B	1.951671e-01
Done

Running MutSig 2:
Scatter job 51: processing genes 4525 - 4614
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
DNAH11
Processing conservation and coverage...
71% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.794182e-01	ci left: 1.660112e-02	ci right 2.208394e-02	k: 192	n:10000
Cons ci ratio: 5.475004e-02	ci left: 3.295215e-01	ci right 3.481725e-01	k: 3388	n:10000
KS ci ratio: 4.635411e-01	ci left: 5.460790e-03	ci right 8.835916e-03	k: 70	n:10000
DNAH11   10000 perm   6 sec   (1771 perm/sec)   p_kst 7.000000e-03   p_cons 3.388000e-01   p_joint 1.920000e-02

Joint ci ratio: 1.663931e-01	ci left: 2.474968e-02	ci right 2.928924e-02	k: 539	n:20000
Cons ci ratio: 4.097013e-02	ci left: 3.075205e-01	ci right 3.204336e-01	k: 6279	n:20000
KS ci ratio: 3.387667e-01	ci left: 5.525009e-03	ci right 7.821951e-03	k: 132	n:20000
DNAH11   20000 perm   15 sec   (1374 perm/sec)   p_kst 6.600000e-03   p_cons 3.139500e-01   p_joint 2.695000e-02

Joint ci ratio: 1.927416e-01	ci left: 1.228821e-02	ci right 1.494055e-02	k: 407	n:30000
Cons ci ratio: 3.364188e-02	ci left: 3.062945e-01	ci right 3.168087e-01	k: 9346	n:30000
KS ci ratio: 2.912969e-01	ci left: 5.126645e-03	ci right 6.904401e-03	k: 179	n:30000
DNAH11   30000 perm   20 sec   (1477 perm/sec)   p_kst 5.966667e-03   p_cons 3.115333e-01   p_joint 1.356667e-02

Joint ci ratio: 1.387098e-01	ci left: 1.821570e-02	ci right 2.095467e-02	k: 782	n:40000
Cons ci ratio: 2.906977e-02	ci left: 3.079589e-01	ci right 3.170683e-01	k: 12500	n:40000
KS ci ratio: 2.386457e-01	ci left: 5.900505e-03	ci right 7.522355e-03	k: 267	n:40000
DNAH11   40000 perm   26 sec   (1527 perm/sec)   p_kst 6.675000e-03   p_cons 3.125000e-01   p_joint 1.955000e-02

Joint ci ratio: 1.121771e-01	ci left: 2.250111e-02	ci right 2.519456e-02	k: 1191	n:50000
Cons ci ratio: 2.393776e-02	ci left: 3.449007e-01	ci right 3.532769e-01	k: 17454	n:50000
KS ci ratio: 2.134517e-01	ci left: 5.984764e-03	ci right 7.433400e-03	k: 334	n:50000
DNAH11   50000 perm   32 sec   (1557 perm/sec)   p_kst 6.680000e-03   p_cons 3.490800e-01   p_joint 2.382000e-02

Joint ci ratio: 1.265765e-01	ci left: 1.473660e-02	ci right 1.674397e-02	k: 943	n:60000
Cons ci ratio: 2.177776e-02	ci left: 3.468142e-01	ci right 3.544669e-01	k: 21038	n:60000
KS ci ratio: 1.922240e-01	ci left: 6.221507e-03	ci right 7.560192e-03	k: 412	n:60000
DNAH11   60000 perm   38 sec   (1576 perm/sec)   p_kst 6.866667e-03   p_cons 3.506333e-01   p_joint 1.571667e-02

Joint ci ratio: 1.123287e-01	ci left: 1.613862e-02	ci right 1.807313e-02	k: 1196	n:70000
Cons ci ratio: 2.024637e-02	ci left: 3.452116e-01	ci right 3.522866e-01	k: 24412	n:70000
KS ci ratio: 1.770119e-01	ci left: 6.341109e-03	ci right 7.586002e-03	k: 486	n:70000
DNAH11   70000 perm   44 sec   (1586 perm/sec)   p_kst 6.942857e-03   p_cons 3.487429e-01   p_joint 1.708571e-02

Joint ci ratio: 1.005335e-01	ci left: 1.771158e-02	ci right 1.959856e-02	k: 1491	n:80000
Cons ci ratio: 1.892082e-02	ci left: 3.458709e-01	ci right 3.524900e-01	k: 27934	n:80000
KS ci ratio: 1.667255e-01	ci left: 6.290140e-03	ci right 7.446058e-03	k: 548	n:80000
DNAH11   80000 perm   50 sec   (1585 perm/sec)   p_kst 6.850000e-03   p_cons 3.491750e-01   p_joint 1.863750e-02

Joint ci ratio: 1.007427e-01	ci left: 1.571031e-02	ci right 1.738773e-02	k: 1488	n:90000
Cons ci ratio: 1.782994e-02	ci left: 3.462844e-01	ci right 3.525253e-01	k: 31446	n:90000
KS ci ratio: 1.563798e-01	ci left: 6.390929e-03	ci right 7.485658e-03	k: 623	n:90000
DNAH11   90000 perm   57 sec   (1583 perm/sec)   p_kst 6.922222e-03   p_cons 3.494000e-01   p_joint 1.653333e-02

Joint ci ratio: 9.866372e-02	ci left: 1.477271e-02	ci right 1.631557e-02	k: 1553	n:100000
Cons ci ratio: 1.691985e-02	ci left: 3.463146e-01	ci right 3.522341e-01	k: 34927	n:100000
KS ci ratio: 1.523132e-01	ci left: 6.078629e-03	ci right 7.090310e-03	k: 657	n:100000
DNAH11   100000 perm   63 sec   (1580 perm/sec)   p_kst 6.570000e-03   p_cons 3.492700e-01   p_joint 1.553000e-02

Joint ci ratio: 9.731510e-02	ci left: 1.382847e-02	ci right 1.525184e-02	k: 1598	n:110000
Cons ci ratio: 1.612786e-02	ci left: 3.465819e-01	ci right 3.522260e-01	k: 38434	n:110000
KS ci ratio: 1.443046e-01	ci left: 6.182580e-03	ci right 7.152797e-03	k: 732	n:110000
DNAH11   110000 perm   70 sec   (1577 perm/sec)   p_kst 6.654545e-03   p_cons 3.494000e-01   p_joint 1.452727e-02

Joint ci ratio: 7.807453e-02	ci left: 1.977108e-02	ci right 2.138554e-02	k: 2468	n:120000
Cons ci ratio: 1.544128e-02	ci left: 3.467019e-01	ci right 3.521054e-01	k: 41928	n:120000
KS ci ratio: 1.382166e-01	ci left: 6.197934e-03	ci right 7.126148e-03	k: 798	n:120000
DNAH11   120000 perm   76 sec   (1573 perm/sec)   p_kst 6.650000e-03   p_cons 3.494000e-01   p_joint 2.056667e-02

Joint ci ratio: 8.490904e-02	ci left: 1.544539e-02	ci right 1.682247e-02	k: 2096	n:130000
Cons ci ratio: 1.485411e-02	ci left: 3.462395e-01	ci right 3.514287e-01	k: 45348	n:130000
KS ci ratio: 1.336191e-01	ci left: 6.137280e-03	ci right 7.023407e-03	k: 854	n:130000
DNAH11   130000 perm   83 sec   (1568 perm/sec)   p_kst 6.569231e-03   p_cons 3.488308e-01   p_joint 1.612308e-02

Joint ci ratio: 8.197380e-02	ci left: 1.541219e-02	ci right 1.673654e-02	k: 2249	n:140000
Cons ci ratio: 1.431139e-02	ci left: 3.464101e-01	ci right 3.514105e-01	k: 48847	n:140000
KS ci ratio: 1.293089e-01	ci left: 6.099557e-03	ci right 6.949647e-03	k: 912	n:140000
DNAH11   140000 perm   90 sec   (1560 perm/sec)   p_kst 6.514286e-03   p_cons 3.489071e-01   p_joint 1.606429e-02

Joint ci ratio: 7.620810e-02	ci left: 1.667234e-02	ci right 1.799974e-02	k: 2599	n:150000
Cons ci ratio: 1.381641e-02	ci left: 3.468137e-01	ci right 3.516454e-01	k: 52384	n:150000
KS ci ratio: 1.251314e-01	ci left: 6.093099e-03	ci right 6.912819e-03	k: 974	n:150000
DNAH11   150000 perm   97 sec   (1552 perm/sec)   p_kst 6.493333e-03   p_cons 3.492267e-01   p_joint 1.732667e-02

Joint ci ratio: 7.298005e-02	ci left: 1.706567e-02	ci right 1.836439e-02	k: 2833	n:160000
Cons ci ratio: 1.338308e-02	ci left: 3.467077e-01	ci right 3.513852e-01	k: 55847	n:160000
KS ci ratio: 1.206337e-01	ci left: 6.160578e-03	ci right 6.957460e-03	k: 1048	n:160000
DNAH11   160000 perm   104 sec   (1545 perm/sec)   p_kst 6.550000e-03   p_cons 3.490437e-01   p_joint 1.770625e-02

Joint ci ratio: 7.153156e-02	ci left: 1.673750e-02	ci right 1.798492e-02	k: 2950	n:170000
Cons ci ratio: 1.299384e-02	ci left: 3.464167e-01	ci right 3.509532e-01	k: 59276	n:170000
KS ci ratio: 1.166932e-01	ci left: 6.209160e-03	ci right 6.984281e-03	k: 1120	n:170000
DNAH11   170000 perm   111 sec   (1538 perm/sec)   p_kst 6.588235e-03   p_cons 3.486824e-01   p_joint 1.735294e-02

Joint ci ratio: 6.935360e-02	ci left: 1.683372e-02	ci right 1.804856e-02	k: 3138	n:180000
Cons ci ratio: 1.262556e-02	ci left: 3.465591e-01	ci right 3.509679e-01	k: 62777	n:180000
KS ci ratio: 1.134507e-01	ci left: 6.214925e-03	ci right 6.967765e-03	k: 1185	n:180000
DNAH11   180000 perm   118 sec   (1529 perm/sec)   p_kst 6.583333e-03   p_cons 3.487611e-01   p_joint 1.743333e-02

Joint ci ratio: 7.047832e-02	ci left: 1.545608e-02	ci right 1.659033e-02	k: 3043	n:190000
Cons ci ratio: 1.228223e-02	ci left: 3.468617e-01	ci right 3.511535e-01	k: 66311	n:190000
KS ci ratio: 1.082646e-01	ci left: 6.481475e-03	ci right 7.228427e-03	k: 1301	n:190000
DNAH11   190000 perm   125 sec   (1522 perm/sec)   p_kst 6.847368e-03   p_cons 3.490053e-01   p_joint 1.601579e-02

Joint ci ratio: 6.999507e-02	ci left: 1.489926e-02	ci right 1.598485e-02	k: 3087	n:200000
Cons ci ratio: 1.197863e-02	ci left: 3.466361e-01	ci right 3.508183e-01	k: 69745	n:200000
KS ci ratio: 1.057771e-01	ci left: 6.459100e-03	ci right 7.185305e-03	k: 1363	n:200000
DNAH11   200000 perm   132 sec   (1516 perm/sec)   p_kst 6.815000e-03   p_cons 3.487250e-01   p_joint 1.543500e-02

Joint ci ratio: 5.505006e-02	ci left: 2.292677e-02	ci right 2.422928e-02	k: 4950	n:210000
Cons ci ratio: 1.230472e-02	ci left: 3.238145e-01	ci right 3.278284e-01	k: 68422	n:210000
KS ci ratio: 1.034536e-01	ci left: 6.439033e-03	ci right 7.146113e-03	k: 1425	n:210000
DNAH11   210000 perm   139 sec   (1508 perm/sec)   p_kst 6.785714e-03   p_cons 3.258190e-01   p_joint 2.357143e-02

Joint ci ratio: 5.587038e-02	ci left: 2.127452e-02	ci right 2.250176e-02	k: 4814	n:220000
Cons ci ratio: 1.202222e-02	ci left: 3.238461e-01	ci right 3.277675e-01	k: 71677	n:220000
KS ci ratio: 1.009698e-01	ci left: 6.460831e-03	ci right 7.152260e-03	k: 1496	n:220000
DNAH11   220000 perm   147 sec   (1501 perm/sec)   p_kst 6.800000e-03   p_cons 3.258045e-01   p_joint 2.188182e-02

Joint ci ratio: 5.534248e-02	ci left: 2.075669e-02	ci right 2.194237e-02	k: 4909	n:230000
Cons ci ratio: 1.175902e-02	ci left: 3.238499e-01	ci right 3.276849e-01	k: 74926	n:230000
KS ci ratio: 9.849872e-02	ci left: 6.502124e-03	ci right 7.179959e-03	k: 1572	n:230000
DNAH11   230000 perm   154 sec   (1493 perm/sec)   p_kst 6.834783e-03   p_cons 3.257652e-01   p_joint 2.134348e-02

Outputting figure to mutsig2_images.part000000000051/DNAH11.42_13901_230000_0.0068348_0.32577_0.021343.png
                gene_name: DNAH11
               theta_stop: 0.098 
                    nperm: 230000 
                     p_ks: 0.0068 
        ci_ks_bounds_left: 0.0065 
       ci_ks_bounds_right: 0.0072 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.021 
     ci_joint_bounds_left: 0.021 
    ci_joint_bounds_right: 0.022 

Current progress: 3 percent done.
DNAH5
Processing conservation and coverage...
70% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.116412e-02	ci left: 7.659773e-01	ci right 7.824627e-01	k: 7743	n:10000
Cons ci ratio: 2.714896e-02	ci left: 6.665257e-01	ci right 6.849718e-01	k: 6758	n:10000
KS ci ratio: 3.272134e-02	ci left: 5.795829e-01	ci right 5.989651e-01	k: 5893	n:10000
DNAH5   10000 perm   5 sec   (1868 perm/sec)   p_kst 5.893000e-01   p_cons 6.758000e-01   p_joint 7.743000e-01

Outputting figure to mutsig2_images.part000000000051/DNAH5.39_14191_10000_0.5893_0.6758_0.7743.png
                gene_name: DNAH5
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 5 percent done.
DNAH8
Processing conservation and coverage...
72% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.373633e-01	ci left: 7.010558e-02	ci right 8.054343e-02	k: 752	n:10000
Cons ci ratio: 3.865703e-02	ci left: 4.970503e-01	ci right 5.167457e-01	k: 5069	n:10000
KS ci ratio: 1.915330e-01	ci left: 3.633915e-02	ci right 4.413159e-02	k: 401	n:10000
DNAH8   10000 perm   5 sec   (1906 perm/sec)   p_kst 4.010000e-02   p_cons 5.069000e-01   p_joint 7.520000e-02

Joint ci ratio: 1.017755e-01	ci left: 6.552521e-02	ci right 7.260070e-02	k: 1380	n:20000
Cons ci ratio: 2.738865e-02	ci left: 4.989955e-01	ci right 5.129027e-01	k: 10119	n:20000
KS ci ratio: 1.332927e-01	ci left: 3.868094e-02	ci right 4.425337e-02	k: 828	n:20000
DNAH8   20000 perm   11 sec   (1814 perm/sec)   p_kst 4.140000e-02   p_cons 5.059500e-01   p_joint 6.900000e-02

Joint ci ratio: 8.255541e-02	ci left: 6.700709e-02	ci right 7.280987e-02	k: 2096	n:30000
Cons ci ratio: 2.241180e-02	ci left: 4.991921e-01	ci right 5.105403e-01	k: 15146	n:30000
KS ci ratio: 1.100160e-01	ci left: 3.836215e-02	ci right 4.286070e-02	k: 1217	n:30000
DNAH8   30000 perm   17 sec   (1778 perm/sec)   p_kst 4.056667e-02   p_cons 5.048667e-01   p_joint 6.986667e-02

Joint ci ratio: 7.093771e-02	ci left: 6.840352e-02	ci right 7.345899e-02	k: 2836	n:40000
Cons ci ratio: 1.938583e-02	ci left: 5.005626e-01	ci right 5.103866e-01	k: 20219	n:40000
KS ci ratio: 9.494232e-02	ci left: 3.893109e-02	ci right 4.283592e-02	k: 1634	n:40000
DNAH8   40000 perm   23 sec   (1752 perm/sec)   p_kst 4.085000e-02   p_cons 5.054750e-01   p_joint 7.090000e-02

Outputting figure to mutsig2_images.part000000000051/DNAH8.37_13829_40000_0.04085_0.50548_0.0709.png
                gene_name: DNAH8
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.041 
        ci_ks_bounds_left: 0.039 
       ci_ks_bounds_right: 0.043 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.071 
     ci_joint_bounds_left: 0.068 
    ci_joint_bounds_right: 0.073 

Current progress: 8 percent done.
DMD
Processing conservation and coverage...
85% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.414688e-01	ci left: 6.623521e-02	ci right 7.641622e-02	k: 712	n:10000
Cons ci ratio: 7.273648e-03	ci left: 9.630998e-01	ci right 9.702249e-01	k: 9668	n:10000
KS ci ratio: 2.554752e-01	ci left: 2.005779e-02	ci right 2.602453e-02	k: 229	n:10000
DMD   10000 perm   5 sec   (2100 perm/sec)   p_kst 2.290000e-02   p_cons 9.668000e-01   p_joint 7.120000e-02

Joint ci ratio: 1.060452e-01	ci left: 6.054901e-02	ci right 6.737843e-02	k: 1278	n:20000
Cons ci ratio: 5.436360e-03	ci left: 9.602908e-01	ci right 9.655736e-01	k: 19260	n:20000
KS ci ratio: 1.804519e-01	ci left: 2.096705e-02	ci right 2.517319e-02	k: 460	n:20000
DMD   20000 perm   10 sec   (1990 perm/sec)   p_kst 2.300000e-02   p_cons 9.630000e-01   p_joint 6.390000e-02

Joint ci ratio: 9.095804e-02	ci left: 5.564217e-02	ci right 6.097710e-02	k: 1748	n:30000
Cons ci ratio: 4.464814e-03	ci left: 9.603567e-01	ci right 9.646864e-01	k: 28877	n:30000
KS ci ratio: 1.504302e-01	ci left: 2.046620e-02	ci right 2.382722e-02	k: 663	n:30000
DMD   30000 perm   16 sec   (1866 perm/sec)   p_kst 2.210000e-02   p_cons 9.625667e-01   p_joint 5.826667e-02

Joint ci ratio: 7.599074e-02	ci left: 5.999983e-02	ci right 6.476394e-02	k: 2494	n:40000
Cons ci ratio: 3.847024e-03	ci left: 9.610269e-01	ci right 9.647555e-01	k: 38517	n:40000
KS ci ratio: 1.286032e-01	ci left: 2.123838e-02	ci right 2.418148e-02	k: 907	n:40000
DMD   40000 perm   22 sec   (1859 perm/sec)   p_kst 2.267500e-02   p_cons 9.629250e-01   p_joint 6.235000e-02

Joint ci ratio: 7.626978e-02	ci left: 4.826293e-02	ci right 5.210951e-02	k: 2508	n:50000
Cons ci ratio: 3.438999e-03	ci left: 9.612675e-01	ci right 9.645985e-01	k: 48148	n:50000
KS ci ratio: 1.144602e-01	ci left: 2.160661e-02	ci right 2.424918e-02	k: 1145	n:50000
DMD   50000 perm   27 sec   (1837 perm/sec)   p_kst 2.290000e-02   p_cons 9.629600e-01   p_joint 5.016000e-02

Joint ci ratio: 6.770256e-02	ci left: 5.112231e-02	ci right 5.472108e-02	k: 3174	n:60000
Cons ci ratio: 3.144078e-03	ci left: 9.613058e-01	ci right 9.643492e-01	k: 57771	n:60000
KS ci ratio: 1.043015e-01	ci left: 2.179908e-02	ci right 2.421402e-02	k: 1379	n:60000
DMD   60000 perm   33 sec   (1821 perm/sec)   p_kst 2.298333e-02   p_cons 9.628500e-01   p_joint 5.290000e-02

Joint ci ratio: 6.278941e-02	ci left: 5.108438e-02	ci right 5.440996e-02	k: 3691	n:70000
Cons ci ratio: 2.927869e-03	ci left: 9.609934e-01	ci right 9.638252e-01	k: 67370	n:70000
KS ci ratio: 9.715287e-02	ci left: 2.162324e-02	ci right 2.384514e-02	k: 1590	n:70000
DMD   70000 perm   39 sec   (1798 perm/sec)   p_kst 2.271429e-02   p_cons 9.624286e-01   p_joint 5.272857e-02

Outputting figure to mutsig2_images.part000000000051/DMD.34_11651_70000_0.022714_0.96243_0.052729.png
                gene_name: DMD
               theta_stop: 0.097 
                    nperm: 70000 
                     p_ks: 0.023 
        ci_ks_bounds_left: 0.022 
       ci_ks_bounds_right: 0.024 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.053 
     ci_joint_bounds_left: 0.051 
    ci_joint_bounds_right: 0.054 

Current progress: 11 percent done.
DNAH9
Processing conservation and coverage...
72% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.051687e-02	ci left: 6.130147e-01	ci right 6.321138e-01	k: 6226	n:10000
Cons ci ratio: 2.021124e-02	ci left: 7.818830e-01	ci right 7.979478e-01	k: 7900	n:10000
KS ci ratio: 3.816527e-02	ci left: 5.034510e-01	ci right 5.231413e-01	k: 5133	n:10000
DNAH9   10000 perm   6 sec   (1810 perm/sec)   p_kst 5.133000e-01   p_cons 7.900000e-01   p_joint 6.226000e-01

Outputting figure to mutsig2_images.part000000000051/DNAH9.34_13737_10000_0.5133_0.79_0.6226.png
                gene_name: DNAH9
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 14 percent done.
DNAH7
Processing conservation and coverage...
81% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.002699e-02	ci left: 1.856990e-01	ci right 2.012800e-01	k: 1934	n:10000
Cons ci ratio: 7.106126e-02	ci left: 2.249406e-01	ci right 2.416151e-01	k: 2332	n:10000
KS ci ratio: 9.280271e-02	ci left: 1.443289e-01	ci right 1.584748e-01	k: 1513	n:10000
DNAH7   10000 perm   5 sec   (1990 perm/sec)   p_kst 1.513000e-01   p_cons 2.332000e-01   p_joint 1.934000e-01

Outputting figure to mutsig2_images.part000000000051/DNAH7.32_12335_10000_0.1513_0.2332_0.1934.png
                gene_name: DNAH7
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 16 percent done.
DNAH10
Processing conservation and coverage...
72% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.635411e-01	ci left: 5.460790e-03	ci right 8.835916e-03	k: 70	n:10000
Cons ci ratio: 5.952407e-02	ci left: 2.934065e-01	ci right 3.115087e-01	k: 3024	n:10000
KS ci ratio: 9.498839e-01	ci left: 9.148061e-04	ci right 2.597003e-03	k: 16	n:10000
DNAH10   10000 perm   5 sec   (2008 perm/sec)   p_kst 1.600000e-03   p_cons 3.024000e-01   p_joint 7.000000e-03

Joint ci ratio: 4.970559e-01	ci left: 2.333787e-03	ci right 3.916152e-03	k: 61	n:20000
Cons ci ratio: 4.224010e-02	ci left: 2.945976e-01	ci right 3.073603e-01	k: 6019	n:20000
KS ci ratio: 7.682562e-01	ci left: 8.090923e-04	ci right 1.844697e-03	k: 25	n:20000
DNAH10   20000 perm   11 sec   (1895 perm/sec)   p_kst 1.250000e-03   p_cons 3.009500e-01   p_joint 3.050000e-03

Joint ci ratio: 4.349599e-01	ci left: 2.115050e-03	ci right 3.317815e-03	k: 80	n:30000
Cons ci ratio: 3.448074e-02	ci left: 2.958786e-01	ci right 3.062932e-01	k: 9032	n:30000
KS ci ratio: 6.272838e-01	ci left: 8.965198e-04	ci right 1.738189e-03	k: 38	n:30000
DNAH10   30000 perm   16 sec   (1860 perm/sec)   p_kst 1.266667e-03   p_cons 3.010667e-01   p_joint 2.666667e-03

Joint ci ratio: 2.793097e-01	ci left: 4.216083e-03	ci right 5.607289e-03	k: 195	n:40000
Cons ci ratio: 3.000730e-02	ci left: 2.945406e-01	ci right 3.035386e-01	k: 11961	n:40000
KS ci ratio: 5.380899e-01	ci left: 9.710499e-04	ci right 1.704432e-03	k: 52	n:40000
DNAH10   40000 perm   22 sec   (1833 perm/sec)   p_kst 1.300000e-03   p_cons 2.990250e-01   p_joint 4.875000e-03

Joint ci ratio: 1.569638e-01	ci left: 1.135228e-02	ci right 1.330495e-02	k: 615	n:50000
Cons ci ratio: 2.686306e-02	ci left: 2.946502e-01	ci right 3.026932e-01	k: 14933	n:50000
KS ci ratio: 5.015933e-01	ci left: 9.158475e-04	ci right 1.544372e-03	k: 60	n:50000
DNAH10   50000 perm   28 sec   (1815 perm/sec)   p_kst 1.200000e-03   p_cons 2.986600e-01   p_joint 1.230000e-02

Joint ci ratio: 1.538789e-01	ci left: 9.876125e-03	ci right 1.153838e-02	k: 641	n:60000
Cons ci ratio: 2.445614e-02	ci left: 2.961354e-01	ci right 3.034840e-01	k: 17988	n:60000
KS ci ratio: 4.716372e-01	ci left: 8.801818e-04	ci right 1.436552e-03	k: 68	n:60000
DNAH10   60000 perm   33 sec   (1800 perm/sec)   p_kst 1.133333e-03   p_cons 2.998000e-01   p_joint 1.068333e-02

Joint ci ratio: 2.707451e-01	ci left: 2.581796e-03	ci right 3.403118e-03	k: 208	n:70000
Cons ci ratio: 2.309628e-02	ci left: 2.881635e-01	ci right 2.949110e-01	k: 20407	n:70000
KS ci ratio: 4.585587e-01	ci left: 8.048781e-04	ci right 1.295143e-03	k: 72	n:70000
DNAH10   70000 perm   39 sec   (1785 perm/sec)   p_kst 1.028571e-03   p_cons 2.915286e-01   p_joint 2.971429e-03

Joint ci ratio: 2.537160e-01	ci left: 2.597768e-03	ci right 3.363980e-03	k: 237	n:80000
Cons ci ratio: 2.161338e-02	ci left: 2.882152e-01	ci right 2.945250e-01	k: 23309	n:80000
KS ci ratio: 4.274798e-01	ci left: 8.264451e-04	ci right 1.285977e-03	k: 83	n:80000
DNAH10   80000 perm   45 sec   (1768 perm/sec)   p_kst 1.037500e-03   p_cons 2.913625e-01   p_joint 2.962500e-03

Joint ci ratio: 2.461003e-01	ci left: 2.465336e-03	ci right 3.167319e-03	k: 252	n:90000
Cons ci ratio: 2.035032e-02	ci left: 2.889420e-01	ci right 2.948936e-01	k: 26272	n:90000
KS ci ratio: 4.153114e-01	ci left: 7.842779e-04	ci right 1.204513e-03	k: 88	n:90000
DNAH10   90000 perm   51 sec   (1749 perm/sec)   p_kst 9.777778e-04   p_cons 2.919111e-01   p_joint 2.800000e-03

Joint ci ratio: 2.486102e-01	ci left: 2.171859e-03	ci right 2.797556e-03	k: 247	n:100000
Cons ci ratio: 1.930518e-02	ci left: 2.891132e-01	ci right 2.947589e-01	k: 29193	n:100000
KS ci ratio: 4.019904e-01	ci left: 7.596804e-04	ci right 1.150201e-03	k: 94	n:100000
DNAH10   100000 perm   58 sec   (1737 perm/sec)   p_kst 9.400000e-04   p_cons 2.919300e-01   p_joint 2.470000e-03

Joint ci ratio: 2.409685e-01	ci left: 2.110943e-03	ci right 2.697603e-03	k: 263	n:110000
Cons ci ratio: 1.839682e-02	ci left: 2.894681e-01	ci right 2.948519e-01	k: 32137	n:110000
KS ci ratio: 3.978384e-01	ci left: 7.069673e-04	ci right 1.065647e-03	k: 96	n:110000
DNAH10   110000 perm   64 sec   (1723 perm/sec)   p_kst 8.727273e-04   p_cons 2.921545e-01   p_joint 2.390909e-03

Joint ci ratio: 2.352570e-01	ci left: 2.036892e-03	ci right 2.587601e-03	k: 276	n:120000
Cons ci ratio: 1.761916e-02	ci left: 2.894533e-01	ci right 2.946068e-01	k: 35043	n:120000
KS ci ratio: 3.879712e-01	ci left: 6.856020e-04	ci right 1.022609e-03	k: 101	n:120000
DNAH10   120000 perm   70 sec   (1711 perm/sec)   p_kst 8.416667e-04   p_cons 2.920250e-01   p_joint 2.300000e-03

Joint ci ratio: 2.410133e-01	ci left: 1.786145e-03	ci right 2.282641e-03	k: 263	n:130000
Cons ci ratio: 1.694255e-02	ci left: 2.891992e-01	ci right 2.941485e-01	k: 37917	n:130000
KS ci ratio: 3.702442e-01	ci left: 7.024607e-04	ci right 1.028161e-03	k: 111	n:130000
DNAH10   130000 perm   77 sec   (1696 perm/sec)   p_kst 8.538462e-04   p_cons 2.916692e-01   p_joint 2.023077e-03

Joint ci ratio: 2.392220e-01	ci left: 1.685405e-03	ci right 2.149899e-03	k: 267	n:140000
Cons ci ratio: 1.630504e-02	ci left: 2.898257e-01	ci right 2.945972e-01	k: 40909	n:140000
KS ci ratio: 3.607119e-01	ci left: 6.912060e-04	ci right 1.001499e-03	k: 117	n:140000
DNAH10   140000 perm   83 sec   (1684 perm/sec)   p_kst 8.357143e-04   p_cons 2.922071e-01   p_joint 1.907143e-03

Joint ci ratio: 2.340453e-01	ci left: 1.648298e-03	ci right 2.091312e-03	k: 279	n:150000
Cons ci ratio: 1.576745e-02	ci left: 2.895069e-01	ci right 2.941145e-01	k: 43771	n:150000
KS ci ratio: 3.476953e-01	ci left: 6.997892e-04	ci right 1.000047e-03	k: 126	n:150000
DNAH10   150000 perm   90 sec   (1671 perm/sec)   p_kst 8.400000e-04   p_cons 2.918067e-01   p_joint 1.860000e-03

Joint ci ratio: 2.307795e-01	ci left: 1.592363e-03	ci right 2.013519e-03	k: 287	n:160000
Cons ci ratio: 1.526911e-02	ci left: 2.895171e-01	ci right 2.939780e-01	k: 46679	n:160000
KS ci ratio: 3.423507e-01	ci left: 6.788849e-04	ci right 9.647043e-04	k: 130	n:160000
DNAH10   160000 perm   96 sec   (1660 perm/sec)   p_kst 8.125000e-04   p_cons 2.917438e-01   p_joint 1.793750e-03

Joint ci ratio: 2.295970e-01	ci left: 1.515317e-03	ci right 1.913750e-03	k: 290	n:170000
Cons ci ratio: 1.481500e-02	ci left: 2.895340e-01	ci right 2.938613e-01	k: 49588	n:170000
KS ci ratio: 3.372449e-01	ci left: 6.604712e-04	ci right 9.334886e-04	k: 134	n:170000
DNAH10   170000 perm   103 sec   (1649 perm/sec)   p_kst 7.882353e-04   p_cons 2.916941e-01   p_joint 1.705882e-03

Joint ci ratio: 2.443476e-01	ci left: 1.253426e-03	ci right 1.607389e-03	k: 256	n:180000
Cons ci ratio: 1.440651e-02	ci left: 2.893402e-01	ci right 2.935443e-01	k: 52459	n:180000
KS ci ratio: 3.242890e-01	ci left: 6.798178e-04	ci right 9.477926e-04	k: 145	n:180000
DNAH10   180000 perm   110 sec   (1639 perm/sec)   p_kst 8.055556e-04   p_cons 2.914389e-01   p_joint 1.422222e-03

Joint ci ratio: 2.406351e-01	ci left: 1.227001e-03	ci right 1.567451e-03	k: 264	n:190000
Cons ci ratio: 1.402091e-02	ci left: 2.894361e-01	ci right 2.935281e-01	k: 55381	n:190000
KS ci ratio: 3.188775e-01	ci left: 6.682291e-04	ci right 9.263427e-04	k: 150	n:190000
DNAH10   190000 perm   117 sec   (1629 perm/sec)   p_kst 7.894737e-04   p_cons 2.914789e-01   p_joint 1.389474e-03

Joint ci ratio: 2.410994e-01	ci left: 1.160948e-03	ci right 1.483784e-03	k: 263	n:200000
Cons ci ratio: 1.367315e-02	ci left: 2.892693e-01	ci right 2.932567e-01	k: 58252	n:200000
KS ci ratio: 3.097785e-01	ci left: 6.762692e-04	ci right 9.285627e-04	k: 159	n:200000
DNAH10   200000 perm   124 sec   (1616 perm/sec)   p_kst 7.950000e-04   p_cons 2.912600e-01   p_joint 1.315000e-03

Joint ci ratio: 2.401978e-01	ci left: 1.114611e-03	ci right 1.423230e-03	k: 265	n:210000
Cons ci ratio: 1.335174e-02	ci left: 2.890673e-01	ci right 2.929575e-01	k: 61112	n:210000
KS ci ratio: 3.014164e-01	ci left: 6.836380e-04	ci right 9.304777e-04	k: 168	n:210000
DNAH10   210000 perm   131 sec   (1603 perm/sec)   p_kst 8.000000e-04   p_cons 2.910095e-01   p_joint 1.261905e-03

Joint ci ratio: 2.371014e-01	ci left: 1.093861e-03	ci right 1.392257e-03	k: 272	n:220000
Cons ci ratio: 1.304838e-02	ci left: 2.889981e-01	ci right 2.927983e-01	k: 63997	n:220000
KS ci ratio: 2.979142e-01	ci left: 6.693778e-04	ci right 9.077292e-04	k: 172	n:220000
DNAH10   220000 perm   138 sec   (1592 perm/sec)   p_kst 7.818182e-04   p_cons 2.908955e-01   p_joint 1.236364e-03

Joint ci ratio: 2.284724e-01	ci left: 1.132286e-03	ci right 1.428339e-03	k: 293	n:230000
Cons ci ratio: 1.275242e-02	ci left: 2.893351e-01	ci right 2.930528e-01	k: 66974	n:230000
KS ci ratio: 2.880876e-01	ci left: 6.886160e-04	ci right 9.242580e-04	k: 184	n:230000
DNAH10   230000 perm   145 sec   (1582 perm/sec)   p_kst 8.000000e-04   p_cons 2.911913e-01   p_joint 1.273913e-03

Joint ci ratio: 2.239481e-01	ci left: 1.132274e-03	ci right 1.421653e-03	k: 305	n:240000
Cons ci ratio: 1.247951e-02	ci left: 2.895201e-01	ci right 2.931600e-01	k: 69921	n:240000
KS ci ratio: 2.842735e-01	ci left: 6.792614e-04	ci right 9.080726e-04	k: 189	n:240000
DNAH10   240000 perm   153 sec   (1572 perm/sec)   p_kst 7.875000e-04   p_cons 2.913375e-01   p_joint 1.270833e-03

Joint ci ratio: 2.221441e-01	ci left: 1.105864e-03	ci right 1.385905e-03	k: 310	n:250000
Cons ci ratio: 1.223916e-02	ci left: 2.891600e-01	ci right 2.927248e-01	k: 72735	n:250000
KS ci ratio: 2.770744e-01	ci left: 6.892766e-04	ci right 9.145567e-04	k: 199	n:250000
DNAH10   250000 perm   160 sec   (1562 perm/sec)   p_kst 7.960000e-04   p_cons 2.909400e-01   p_joint 1.240000e-03

Joint ci ratio: 2.186575e-01	ci left: 1.099669e-03	ci right 1.373183e-03	k: 320	n:260000
Cons ci ratio: 1.200041e-02	ci left: 2.892314e-01	ci right 2.927271e-01	k: 75654	n:260000
KS ci ratio: 2.730106e-01	ci left: 6.842513e-04	ci right 9.040463e-04	k: 205	n:260000
DNAH10   260000 perm   168 sec   (1552 perm/sec)   p_kst 7.884615e-04   p_cons 2.909769e-01   p_joint 1.230769e-03

Joint ci ratio: 2.156566e-01	ci left: 1.090460e-03	ci right 1.357469e-03	k: 329	n:270000
Cons ci ratio: 1.177543e-02	ci left: 2.892871e-01	ci right 2.927174e-01	k: 78570	n:270000
KS ci ratio: 2.629845e-01	ci left: 7.141894e-04	ci right 9.337910e-04	k: 221	n:270000
DNAH10   270000 perm   175 sec   (1542 perm/sec)   p_kst 8.185185e-04   p_cons 2.910000e-01   p_joint 1.218519e-03

Joint ci ratio: 2.137248e-01	ci left: 1.071790e-03	ci right 1.331568e-03	k: 335	n:280000
Cons ci ratio: 1.156675e-02	ci left: 2.891932e-01	ci right 2.925612e-01	k: 81445	n:280000
KS ci ratio: 2.578102e-01	ci left: 7.187280e-04	ci right 9.346771e-04	k: 230	n:280000
DNAH10   280000 perm   183 sec   (1532 perm/sec)   p_kst 8.214286e-04   p_cons 2.908750e-01   p_joint 1.196429e-03

Joint ci ratio: 2.186716e-01	ci left: 9.859033e-04	ci right 1.231139e-03	k: 320	n:290000
Cons ci ratio: 1.136707e-02	ci left: 2.891682e-01	ci right 2.924774e-01	k: 84338	n:290000
KS ci ratio: 2.567041e-01	ci left: 7.003953e-04	ci right 9.097885e-04	k: 232	n:290000
DNAH10   290000 perm   190 sec   (1523 perm/sec)   p_kst 8.000000e-04   p_cons 2.908207e-01   p_joint 1.103448e-03

Joint ci ratio: 2.218105e-01	ci left: 9.246914e-04	ci right 1.158453e-03	k: 311	n:300000
Cons ci ratio: 1.117956e-02	ci left: 2.890655e-01	ci right 2.923186e-01	k: 87207	n:300000
KS ci ratio: 2.529333e-01	ci left: 6.988919e-04	ci right 9.042827e-04	k: 239	n:300000
DNAH10   300000 perm   198 sec   (1512 perm/sec)   p_kst 7.966667e-04   p_cons 2.906900e-01   p_joint 1.036667e-03

Joint ci ratio: 1.785976e-01	ci left: 1.413042e-03	ci right 1.693182e-03	k: 480	n:310000
Cons ci ratio: 1.099355e-02	ci left: 2.892500e-01	ci right 2.924507e-01	k: 90163	n:310000
KS ci ratio: 2.468360e-01	ci left: 7.126336e-04	ci right 9.162399e-04	k: 251	n:310000
DNAH10   310000 perm   206 sec   (1503 perm/sec)   p_kst 8.096774e-04   p_cons 2.908484e-01   p_joint 1.548387e-03

Joint ci ratio: 1.755224e-01	ci left: 1.419656e-03	ci right 1.695747e-03	k: 497	n:320000
Cons ci ratio: 1.082226e-02	ci left: 2.892050e-01	ci right 2.923550e-01	k: 93049	n:320000
KS ci ratio: 2.420789e-01	ci left: 7.197001e-04	ci right 9.207674e-04	k: 261	n:320000
DNAH10   320000 perm   214 sec   (1493 perm/sec)   p_kst 8.156250e-04   p_cons 2.907781e-01   p_joint 1.553125e-03

Joint ci ratio: 1.749994e-01	ci left: 1.385326e-03	ci right 1.653853e-03	k: 500	n:330000
Cons ci ratio: 1.065991e-02	ci left: 2.891178e-01	ci right 2.922192e-01	k: 95920	n:330000
KS ci ratio: 2.389088e-01	ci left: 7.178249e-04	ci right 9.153534e-04	k: 268	n:330000
DNAH10   330000 perm   222 sec   (1484 perm/sec)   p_kst 8.121212e-04   p_cons 2.906667e-01   p_joint 1.515152e-03

Joint ci ratio: 1.755305e-01	ci left: 1.336142e-03	ci right 1.596004e-03	k: 497	n:340000
Cons ci ratio: 1.050008e-02	ci left: 2.892151e-01	ci right 2.922708e-01	k: 98852	n:340000
KS ci ratio: 2.367201e-01	ci left: 7.105418e-04	ci right 9.040122e-04	k: 273	n:340000
DNAH10   340000 perm   230 sec   (1475 perm/sec)   p_kst 8.029412e-04   p_cons 2.907412e-01   p_joint 1.461765e-03

Joint ci ratio: 1.724409e-01	ci left: 1.347156e-03	ci right 1.604069e-03	k: 515	n:350000
Cons ci ratio: 1.035103e-02	ci left: 2.891560e-01	ci right 2.921675e-01	k: 101731	n:350000
KS ci ratio: 2.333382e-01	ci left: 7.117519e-04	ci right 9.023838e-04	k: 281	n:350000
DNAH10   350000 perm   239 sec   (1467 perm/sec)   p_kst 8.028571e-04   p_cons 2.906600e-01   p_joint 1.471429e-03

Joint ci ratio: 1.719446e-01	ci left: 1.317707e-03	ci right 1.568206e-03	k: 518	n:360000
Cons ci ratio: 1.020444e-02	ci left: 2.892503e-01	ci right 2.922198e-01	k: 104664	n:360000
KS ci ratio: 2.281374e-01	ci left: 7.260057e-04	ci right 9.155114e-04	k: 294	n:360000
DNAH10   360000 perm   247 sec   (1458 perm/sec)   p_kst 8.166667e-04   p_cons 2.907333e-01   p_joint 1.438889e-03

Joint ci ratio: 1.363245e-01	ci left: 2.077697e-03	ci right 2.384236e-03	k: 824	n:370000
Cons ci ratio: 1.006701e-02	ci left: 2.892129e-01	ci right 2.921418e-01	k: 107550	n:370000
KS ci ratio: 2.221891e-01	ci left: 7.471895e-04	ci right 9.364444e-04	k: 310	n:370000
DNAH10   370000 perm   255 sec   (1450 perm/sec)   p_kst 8.378378e-04   p_cons 2.906757e-01   p_joint 2.227027e-03

Joint ci ratio: 1.357525e-01	ci left: 2.040812e-03	ci right 2.340544e-03	k: 831	n:380000
Cons ci ratio: 9.937390e-03	ci left: 2.890778e-01	ci right 2.919675e-01	k: 110398	n:380000
KS ci ratio: 2.193854e-01	ci left: 7.474151e-04	ci right 9.340161e-04	k: 318	n:380000
DNAH10   380000 perm   264 sec   (1441 perm/sec)   p_kst 8.368421e-04   p_cons 2.905211e-01   p_joint 2.186842e-03

Joint ci ratio: 1.429049e-01	ci left: 1.788010e-03	ci right 2.065628e-03	k: 750	n:390000
Cons ci ratio: 9.810334e-03	ci left: 2.890473e-01	ci right 2.918994e-01	k: 113284	n:390000
KS ci ratio: 2.163545e-01	ci left: 7.500685e-04	ci right 9.344011e-04	k: 327	n:390000
DNAH10   390000 perm   272 sec   (1432 perm/sec)   p_kst 8.384615e-04   p_cons 2.904718e-01   p_joint 1.923077e-03

Joint ci ratio: 1.483510e-01	ci left: 1.613216e-03	ci right 1.874087e-03	k: 696	n:400000
Cons ci ratio: 9.683566e-03	ci left: 2.892082e-01	ci right 2.920248e-01	k: 116246	n:400000
KS ci ratio: 2.137634e-01	ci left: 7.502396e-04	ci right 9.321166e-04	k: 335	n:400000
DNAH10   400000 perm   281 sec   (1423 perm/sec)   p_kst 8.375000e-04   p_cons 2.906150e-01   p_joint 1.740000e-03

Joint ci ratio: 1.480354e-01	ci left: 1.580913e-03	ci right 1.835968e-03	k: 699	n:410000
Cons ci ratio: 9.564302e-03	ci left: 2.892446e-01	ci right 2.920267e-01	k: 119160	n:410000
KS ci ratio: 2.118806e-01	ci left: 7.457951e-04	ci right 9.247953e-04	k: 341	n:410000
DNAH10   410000 perm   290 sec   (1415 perm/sec)   p_kst 8.317073e-04   p_cons 2.906341e-01   p_joint 1.704878e-03

Joint ci ratio: 1.461678e-01	ci left: 1.584552e-03	ci right 1.836688e-03	k: 717	n:420000
Cons ci ratio: 9.449121e-03	ci left: 2.892889e-01	ci right 2.920378e-01	k: 122078	n:420000
KS ci ratio: 2.091464e-01	ci left: 7.483371e-04	ci right 9.253329e-04	k: 350	n:420000
DNAH10   420000 perm   298 sec   (1407 perm/sec)   p_kst 8.333333e-04   p_cons 2.906619e-01   p_joint 1.707143e-03

Joint ci ratio: 1.447638e-01	ci left: 1.579075e-03	ci right 1.827717e-03	k: 731	n:430000
Cons ci ratio: 9.339636e-03	ci left: 2.892594e-01	ci right 2.919760e-01	k: 124965	n:430000
KS ci ratio: 2.088509e-01	ci left: 7.331371e-04	ci right 9.062615e-04	k: 351	n:430000
DNAH10   430000 perm   308 sec   (1398 perm/sec)   p_kst 8.162791e-04   p_cons 2.906163e-01   p_joint 1.700000e-03

Joint ci ratio: 1.454650e-01	ci left: 1.527852e-03	ci right 1.769695e-03	k: 724	n:440000
Cons ci ratio: 9.234023e-03	ci left: 2.892246e-01	ci right 2.919100e-01	k: 127849	n:440000
KS ci ratio: 2.065174e-01	ci left: 7.337112e-04	ci right 9.047907e-04	k: 359	n:440000
DNAH10   440000 perm   317 sec   (1390 perm/sec)   p_kst 8.159091e-04   p_cons 2.905659e-01   p_joint 1.645455e-03

Joint ci ratio: 1.446704e-01	ci left: 1.511032e-03	ci right 1.748792e-03	k: 732	n:450000
Cons ci ratio: 9.130584e-03	ci left: 2.892515e-01	ci right 2.919068e-01	k: 130760	n:450000
KS ci ratio: 2.042603e-01	ci left: 7.342700e-04	ci right 9.033751e-04	k: 367	n:450000
DNAH10   450000 perm   326 sec   (1382 perm/sec)   p_kst 8.155556e-04   p_cons 2.905778e-01   p_joint 1.626667e-03

Joint ci ratio: 1.520155e-01	ci left: 1.333738e-03	ci right 1.555227e-03	k: 663	n:460000
Cons ci ratio: 9.034643e-03	ci left: 2.890906e-01	ci right 2.917164e-01	k: 133585	n:460000
KS ci ratio: 2.018073e-01	ci left: 7.368783e-04	ci right 9.042949e-04	k: 376	n:460000
DNAH10   460000 perm   335 sec   (1374 perm/sec)   p_kst 8.173913e-04   p_cons 2.904022e-01   p_joint 1.441304e-03

Joint ci ratio: 1.505491e-01	ci left: 1.331973e-03	ci right 1.550843e-03	k: 676	n:470000
Cons ci ratio: 8.935016e-03	ci left: 2.892427e-01	ci right 2.918408e-01	k: 136554	n:470000
KS ci ratio: 1.994406e-01	ci left: 7.393872e-04	ci right 9.051640e-04	k: 385	n:470000
DNAH10   470000 perm   344 sec   (1366 perm/sec)   p_kst 8.191489e-04   p_cons 2.905404e-01   p_joint 1.438298e-03

Joint ci ratio: 1.484793e-01	ci left: 1.342326e-03	ci right 1.559596e-03	k: 695	n:480000
Cons ci ratio: 8.839284e-03	ci left: 2.893574e-01	ci right 2.919285e-01	k: 139508	n:480000
KS ci ratio: 1.964102e-01	ci left: 7.477447e-04	ci right 9.125433e-04	k: 397	n:480000
DNAH10   480000 perm   353 sec   (1358 perm/sec)   p_kst 8.270833e-04   p_cons 2.906417e-01   p_joint 1.447917e-03

Joint ci ratio: 1.495613e-01	ci left: 1.295282e-03	ci right 1.506602e-03	k: 685	n:490000
Cons ci ratio: 8.750200e-03	ci left: 2.892963e-01	ci right 2.918408e-01	k: 142378	n:490000
KS ci ratio: 1.944655e-01	ci left: 7.480123e-04	ci right 9.110444e-04	k: 405	n:490000
DNAH10   490000 perm   363 sec   (1351 perm/sec)   p_kst 8.265306e-04   p_cons 2.905673e-01   p_joint 1.397959e-03

Joint ci ratio: 1.479524e-01	ci left: 1.298260e-03	ci right 1.507586e-03	k: 700	n:500000
Cons ci ratio: 8.662075e-03	ci left: 2.893177e-01	ci right 2.918367e-01	k: 145288	n:500000
KS ci ratio: 1.923452e-01	ci left: 7.501806e-04	ci right 9.116939e-04	k: 414	n:500000
DNAH10   500000 perm   372 sec   (1343 perm/sec)   p_kst 8.280000e-04   p_cons 2.905760e-01   p_joint 1.400000e-03

Joint ci ratio: 1.471162e-01	ci left: 1.287911e-03	ci right 1.494291e-03	k: 708	n:510000
Cons ci ratio: 8.574807e-03	ci left: 2.894226e-01	ci right 2.919170e-01	k: 148241	n:510000
KS ci ratio: 1.902927e-01	ci left: 7.522731e-04	ci right 9.123088e-04	k: 423	n:510000
DNAH10   510000 perm   382 sec   (1336 perm/sec)   p_kst 8.294118e-04   p_cons 2.906686e-01   p_joint 1.388235e-03

Joint ci ratio: 1.177459e-01	ci left: 2.001660e-03	ci right 2.253938e-03	k: 1105	n:520000
Cons ci ratio: 8.492697e-03	ci left: 2.893988e-01	ci right 2.918689e-01	k: 151129	n:520000
KS ci ratio: 1.876551e-01	ci left: 7.597918e-04	ci right 9.189314e-04	k: 435	n:520000
DNAH10   520000 perm   391 sec   (1329 perm/sec)   p_kst 8.365385e-04   p_cons 2.906327e-01   p_joint 2.125000e-03

Joint ci ratio: 1.183394e-01	ci left: 1.943748e-03	ci right 2.190048e-03	k: 1094	n:530000
Cons ci ratio: 8.410939e-03	ci left: 2.894721e-01	ci right 2.919189e-01	k: 154068	n:530000
KS ci ratio: 1.849177e-01	ci left: 7.688409e-04	ci right 9.272634e-04	k: 448	n:530000
DNAH10   530000 perm   401 sec   (1321 perm/sec)   p_kst 8.452830e-04   p_cons 2.906943e-01   p_joint 2.064151e-03

Joint ci ratio: 1.182336e-01	ci left: 1.911345e-03	ci right 2.153307e-03	k: 1096	n:540000
Cons ci ratio: 8.330824e-03	ci left: 2.895760e-01	ci right 2.920003e-01	k: 157025	n:540000
KS ci ratio: 1.841002e-01	ci left: 7.616682e-04	ci right 9.178414e-04	k: 452	n:540000
DNAH10   540000 perm   411 sec   (1314 perm/sec)   p_kst 8.370370e-04   p_cons 2.907870e-01   p_joint 2.029630e-03

Joint ci ratio: 1.186701e-01	ci left: 1.862476e-03	ci right 2.099183e-03	k: 1088	n:550000
Cons ci ratio: 8.255575e-03	ci left: 2.895455e-01	ci right 2.919476e-01	k: 159910	n:550000
KS ci ratio: 1.832935e-01	ci left: 7.547577e-04	ci right 9.087605e-04	k: 456	n:550000
DNAH10   550000 perm   421 sec   (1307 perm/sec)   p_kst 8.290909e-04   p_cons 2.907455e-01   p_joint 1.978182e-03

Joint ci ratio: 1.339587e-01	ci left: 1.424493e-03	ci right 1.630720e-03	k: 854	n:560000
Cons ci ratio: 8.561935e-03	ci left: 2.711986e-01	ci right 2.735323e-01	k: 152524	n:560000
KS ci ratio: 1.819059e-01	ci left: 7.532085e-04	ci right 9.056035e-04	k: 463	n:560000
DNAH10   560000 perm   431 sec   (1300 perm/sec)   p_kst 8.267857e-04   p_cons 2.723643e-01   p_joint 1.525000e-03

Joint ci ratio: 1.349120e-01	ci left: 1.379155e-03	ci right 1.580353e-03	k: 842	n:570000
Cons ci ratio: 8.487086e-03	ci left: 2.711815e-01	ci right 2.734945e-01	k: 155232	n:570000
KS ci ratio: 1.801668e-01	ci left: 7.550683e-04	ci right 9.062198e-04	k: 472	n:570000
DNAH10   570000 perm   441 sec   (1293 perm/sec)   p_kst 8.280702e-04   p_cons 2.723368e-01   p_joint 1.477193e-03

Joint ci ratio: 1.341982e-01	ci left: 1.370371e-03	ci right 1.569145e-03	k: 851	n:580000
Cons ci ratio: 8.414277e-03	ci left: 2.711598e-01	ci right 2.734528e-01	k: 157937	n:580000
KS ci ratio: 1.782917e-01	ci left: 7.585179e-04	ci right 9.086093e-04	k: 482	n:580000
DNAH10   580000 perm   451 sec   (1286 perm/sec)   p_kst 8.310345e-04   p_cons 2.723052e-01   p_joint 1.467241e-03

Joint ci ratio: 1.330322e-01	ci left: 1.371718e-03	ci right 1.568823e-03	k: 866	n:590000
Cons ci ratio: 8.342810e-03	ci left: 2.711627e-01	ci right 2.734361e-01	k: 160656	n:590000
KS ci ratio: 1.768333e-01	ci left: 7.586184e-04	ci right 9.073705e-04	k: 490	n:590000
DNAH10   590000 perm   461 sec   (1279 perm/sec)   p_kst 8.305085e-04   p_cons 2.722983e-01   p_joint 1.467797e-03

Joint ci ratio: 1.320461e-01	ci left: 1.369804e-03	ci right 1.565060e-03	k: 879	n:600000
Cons ci ratio: 8.271429e-03	ci left: 2.712472e-01	ci right 2.735017e-01	k: 163424	n:600000
KS ci ratio: 1.750594e-01	ci left: 7.619076e-04	ci right 9.096474e-04	k: 500	n:600000
DNAH10   600000 perm   471 sec   (1273 perm/sec)   p_kst 8.333333e-04   p_cons 2.723733e-01   p_joint 1.465000e-03

Joint ci ratio: 1.310816e-01	ci left: 1.367958e-03	ci right 1.561416e-03	k: 892	n:610000
Cons ci ratio: 8.201476e-03	ci left: 2.713469e-01	ci right 2.735831e-01	k: 166203	n:610000
KS ci ratio: 1.735078e-01	ci left: 7.635278e-04	ci right 9.101321e-04	k: 509	n:610000
DNAH10   610000 perm   482 sec   (1266 perm/sec)   p_kst 8.344262e-04   p_cons 2.724639e-01   p_joint 1.462295e-03

Joint ci ratio: 1.303543e-01	ci left: 1.361496e-03	ci right 1.552889e-03	k: 902	n:620000
Cons ci ratio: 8.133996e-03	ci left: 2.714081e-01	ci right 2.736263e-01	k: 168960	n:620000
KS ci ratio: 1.716660e-01	ci left: 7.681886e-04	ci right 9.139599e-04	k: 520	n:620000
DNAH10   620000 perm   492 sec   (1259 perm/sec)   p_kst 8.387097e-04   p_cons 2.725161e-01   p_joint 1.454839e-03

Joint ci ratio: 1.294970e-01	ci left: 1.358313e-03	ci right 1.547906e-03	k: 914	n:630000
Cons ci ratio: 8.068574e-03	ci left: 2.714468e-01	ci right 2.736474e-01	k: 171704	n:630000
KS ci ratio: 1.705245e-01	ci left: 7.666304e-04	ci right 9.110392e-04	k: 527	n:630000
DNAH10   630000 perm   503 sec   (1253 perm/sec)   p_kst 8.365079e-04   p_cons 2.725460e-01   p_joint 1.450794e-03

Joint ci ratio: 1.280354e-01	ci left: 1.368845e-03	ci right 1.557588e-03	k: 935	n:640000
Cons ci ratio: 8.005621e-03	ci left: 2.714391e-01	ci right 2.736224e-01	k: 174419	n:640000
KS ci ratio: 1.694054e-01	ci left: 7.651240e-04	ci right 9.082066e-04	k: 534	n:640000
DNAH10   640000 perm   514 sec   (1246 perm/sec)   p_kst 8.343750e-04   p_cons 2.725297e-01   p_joint 1.460937e-03

Joint ci ratio: 1.266885e-01	ci left: 1.377576e-03	ci right 1.565374e-03	k: 955	n:650000
Cons ci ratio: 7.942454e-03	ci left: 2.715146e-01	ci right 2.736812e-01	k: 177188	n:650000
KS ci ratio: 1.672307e-01	ci left: 7.739843e-04	ci right 9.166787e-04	k: 548	n:650000
DNAH10   650000 perm   524 sec   (1239 perm/sec)   p_kst 8.430769e-04   p_cons 2.725969e-01   p_joint 1.469231e-03

Joint ci ratio: 1.260315e-01	ci left: 1.371376e-03	ci right 1.557287e-03	k: 965	n:660000
Cons ci ratio: 7.883951e-03	ci left: 2.714276e-01	ci right 2.735774e-01	k: 179851	n:660000
KS ci ratio: 1.658765e-01	ci left: 7.753253e-04	ci right 9.169939e-04	k: 557	n:660000
DNAH10   660000 perm   535 sec   (1233 perm/sec)   p_kst 8.439394e-04   p_cons 2.725015e-01   p_joint 1.462121e-03

Joint ci ratio: 1.248731e-01	ci left: 1.376930e-03	ci right 1.561752e-03	k: 983	n:670000
Cons ci ratio: 7.826280e-03	ci left: 2.713655e-01	ci right 2.734991e-01	k: 182529	n:670000
KS ci ratio: 1.638333e-01	ci left: 7.837870e-04	ci right 9.250639e-04	k: 571	n:670000
DNAH10   670000 perm   546 sec   (1227 perm/sec)   p_kst 8.522388e-04   p_cons 2.724313e-01   p_joint 1.467164e-03

Joint ci ratio: 1.262963e-01	ci left: 1.325342e-03	ci right 1.505419e-03	k: 961	n:680000
Cons ci ratio: 7.766399e-03	ci left: 2.714816e-01	ci right 2.735997e-01	k: 185327	n:680000
KS ci ratio: 1.624196e-01	ci left: 7.863664e-04	ci right 9.267656e-04	k: 581	n:680000
DNAH10   680000 perm   557 sec   (1221 perm/sec)   p_kst 8.544118e-04   p_cons 2.725397e-01   p_joint 1.413235e-03

Joint ci ratio: 1.257101e-01	ci left: 1.318766e-03	ci right 1.497056e-03	k: 970	n:690000
Cons ci ratio: 7.710011e-03	ci left: 2.714844e-01	ci right 2.735871e-01	k: 188049	n:690000
KS ci ratio: 1.611781e-01	ci left: 7.874851e-04	ci right 9.269053e-04	k: 590	n:690000
DNAH10   690000 perm   568 sec   (1215 perm/sec)   p_kst 8.550725e-04   p_cons 2.725348e-01   p_joint 1.405797e-03

Joint ci ratio: 1.257763e-01	ci left: 1.298542e-03	ci right 1.474197e-03	k: 969	n:700000
Cons ci ratio: 7.656517e-03	ci left: 2.714001e-01	ci right 2.734875e-01	k: 190710	n:700000
KS ci ratio: 1.602321e-01	ci left: 7.858331e-04	ci right 9.240657e-04	k: 597	n:700000
DNAH10   700000 perm   579 sec   (1209 perm/sec)   p_kst 8.528571e-04   p_cons 2.724429e-01   p_joint 1.384286e-03

Joint ci ratio: 1.252613e-01	ci left: 1.291167e-03	ci right 1.465055e-03	k: 977	n:710000
Cons ci ratio: 7.602878e-03	ci left: 2.713830e-01	ci right 2.734555e-01	k: 193417	n:710000
KS ci ratio: 1.596994e-01	ci left: 7.801731e-04	ci right 9.169101e-04	k: 601	n:710000
DNAH10   710000 perm   590 sec   (1203 perm/sec)   p_kst 8.464789e-04   p_cons 2.724183e-01   p_joint 1.376056e-03

Joint ci ratio: 1.115857e-01	ci left: 1.615610e-03	ci right 1.807879e-03	k: 1231	n:720000
Cons ci ratio: 7.550350e-03	ci left: 2.713663e-01	ci right 2.734244e-01	k: 196124	n:720000
KS ci ratio: 1.586488e-01	ci left: 7.800059e-04	ci right 9.157286e-04	k: 609	n:720000
DNAH10   720000 perm   601 sec   (1197 perm/sec)   p_kst 8.458333e-04   p_cons 2.723944e-01   p_joint 1.709722e-03

Joint ci ratio: 1.026293e-01	ci left: 1.892135e-03	ci right 2.098150e-03	k: 1455	n:730000
Cons ci ratio: 7.498923e-03	ci left: 2.713489e-01	ci right 2.733927e-01	k: 198830	n:730000
KS ci ratio: 1.577464e-01	ci left: 7.785303e-04	ci right 9.131527e-04	k: 616	n:730000
DNAH10   730000 perm   613 sec   (1191 perm/sec)   p_kst 8.438356e-04   p_cons 2.723699e-01   p_joint 1.993151e-03

Joint ci ratio: 1.021051e-01	ci left: 1.886317e-03	ci right 2.090586e-03	k: 1470	n:740000
Cons ci ratio: 7.449294e-03	ci left: 2.712914e-01	ci right 2.733212e-01	k: 201506	n:740000
KS ci ratio: 1.573649e-01	ci left: 7.719036e-04	ci right 9.050269e-04	k: 619	n:740000
DNAH10   740000 perm   624 sec   (1185 perm/sec)   p_kst 8.364865e-04   p_cons 2.723054e-01   p_joint 1.986486e-03

Joint ci ratio: 1.022458e-01	ci left: 1.855967e-03	ci right 2.057244e-03	k: 1466	n:750000
Cons ci ratio: 7.398620e-03	ci left: 2.713434e-01	ci right 2.733597e-01	k: 204263	n:750000
KS ci ratio: 1.564842e-01	ci left: 7.705784e-04	ci right 9.026594e-04	k: 626	n:750000
DNAH10   750000 perm   636 sec   (1180 perm/sec)   p_kst 8.346667e-04   p_cons 2.723507e-01   p_joint 1.954667e-03

Joint ci ratio: 1.020383e-01	ci left: 1.839239e-03	ci right 2.038272e-03	k: 1472	n:760000
Cons ci ratio: 7.350382e-03	ci left: 2.713178e-01	ci right 2.733208e-01	k: 206962	n:760000
KS ci ratio: 1.553730e-01	ci left: 7.718193e-04	ci right 9.030861e-04	k: 635	n:760000
DNAH10   760000 perm   647 sec   (1174 perm/sec)   p_kst 8.355263e-04   p_cons 2.723184e-01   p_joint 1.936842e-03

Joint ci ratio: 9.854826e-02	ci left: 1.949569e-03	ci right 2.152908e-03	k: 1578	n:770000
Cons ci ratio: 7.301808e-03	ci left: 2.713617e-01	ci right 2.733517e-01	k: 209714	n:770000
KS ci ratio: 1.533363e-01	ci left: 7.830212e-04	ci right 9.142873e-04	k: 652	n:770000
DNAH10   770000 perm   659 sec   (1169 perm/sec)   p_kst 8.467532e-04   p_cons 2.723558e-01   p_joint 2.049351e-03

Joint ci ratio: 9.823834e-02	ci left: 1.937078e-03	ci right 2.138443e-03	k: 1588	n:780000
Cons ci ratio: 7.253503e-03	ci left: 2.714417e-01	ci right 2.734190e-01	k: 212495	n:780000
KS ci ratio: 1.522904e-01	ci left: 7.840798e-04	ci right 9.145449e-04	k: 661	n:780000
DNAH10   780000 perm   670 sec   (1163 perm/sec)   p_kst 8.474359e-04   p_cons 2.724295e-01   p_joint 2.035897e-03

Joint ci ratio: 9.756516e-02	ci left: 1.939725e-03	ci right 2.139904e-03	k: 1610	n:790000
Cons ci ratio: 7.206581e-03	ci left: 2.714956e-01	ci right 2.734605e-01	k: 215257	n:790000
KS ci ratio: 1.511529e-01	ci left: 7.863324e-04	ci right 9.161067e-04	k: 671	n:790000
DNAH10   790000 perm   682 sec   (1158 perm/sec)   p_kst 8.493671e-04   p_cons 2.724772e-01   p_joint 2.037975e-03

Joint ci ratio: 9.696515e-02	ci left: 1.939870e-03	ci right 2.138763e-03	k: 1630	n:800000
Cons ci ratio: 7.161280e-03	ci left: 2.715083e-01	ci right 2.734608e-01	k: 217987	n:800000
KS ci ratio: 1.498208e-01	ci left: 7.909386e-04	ci right 9.202196e-04	k: 683	n:800000
DNAH10   800000 perm   694 sec   (1152 perm/sec)   p_kst 8.537500e-04   p_cons 2.724838e-01   p_joint 2.037500e-03

Joint ci ratio: 9.687713e-02	ci left: 1.919534e-03	ci right 2.116153e-03	k: 1633	n:810000
Cons ci ratio: 7.117156e-03	ci left: 2.715022e-01	ci right 2.734426e-01	k: 220702	n:810000
KS ci ratio: 1.491682e-01	ci left: 7.883042e-04	ci right 9.165433e-04	k: 689	n:810000
DNAH10   810000 perm   706 sec   (1147 perm/sec)   p_kst 8.506173e-04   p_cons 2.724716e-01   p_joint 2.016049e-03

Joint ci ratio: 9.620227e-02	ci left: 1.923497e-03	ci right 2.119072e-03	k: 1656	n:820000
Cons ci ratio: 7.074468e-03	ci left: 2.714610e-01	ci right 2.733894e-01	k: 223388	n:820000
KS ci ratio: 1.485241e-01	ci left: 7.857352e-04	ci right 9.129554e-04	k: 695	n:820000
DNAH10   820000 perm   719 sec   (1141 perm/sec)   p_kst 8.475610e-04   p_cons 2.724244e-01   p_joint 2.019512e-03

Joint ci ratio: 9.548438e-02	ci left: 1.929721e-03	ci right 2.124383e-03	k: 1681	n:830000
Cons ci ratio: 7.031749e-03	ci left: 2.714653e-01	ci right 2.733821e-01	k: 226111	n:830000
KS ci ratio: 1.476778e-01	ci left: 7.855499e-04	ci right 9.119514e-04	k: 703	n:830000
DNAH10   830000 perm   731 sec   (1136 perm/sec)   p_kst 8.469880e-04   p_cons 2.724229e-01   p_joint 2.025301e-03

Joint ci ratio: 9.478232e-02	ci left: 1.935802e-03	ci right 2.129562e-03	k: 1706	n:840000
Cons ci ratio: 6.989311e-03	ci left: 2.714969e-01	ci right 2.734023e-01	k: 228857	n:840000
KS ci ratio: 1.464347e-01	ci left: 7.899583e-04	ci right 9.159057e-04	k: 715	n:840000
DNAH10   840000 perm   743 sec   (1130 perm/sec)   p_kst 8.511905e-04   p_cons 2.724488e-01   p_joint 2.030952e-03

Joint ci ratio: 9.434145e-02	ci left: 1.931406e-03	ci right 2.123777e-03	k: 1722	n:850000
Cons ci ratio: 6.949179e-03	ci left: 2.714397e-01	ci right 2.733337e-01	k: 231528	n:850000
KS ci ratio: 1.453225e-01	ci left: 7.931336e-04	ci right 9.185434e-04	k: 726	n:850000
DNAH10   850000 perm   755 sec   (1125 perm/sec)   p_kst 8.541176e-04   p_cons 2.723859e-01   p_joint 2.025882e-03

Joint ci ratio: 9.387964e-02	ci left: 1.928250e-03	ci right 2.119315e-03	k: 1739	n:860000
Cons ci ratio: 6.908981e-03	ci left: 2.714268e-01	ci right 2.733097e-01	k: 234236	n:860000
KS ci ratio: 1.447267e-01	ci left: 7.906347e-04	ci right 9.150925e-04	k: 732	n:860000
DNAH10   860000 perm   768 sec   (1120 perm/sec)   p_kst 8.511628e-04   p_cons 2.723674e-01   p_joint 2.022093e-03

Joint ci ratio: 9.369208e-02	ci left: 1.913943e-03	ci right 2.103190e-03	k: 1746	n:870000
Cons ci ratio: 6.869213e-03	ci left: 2.714291e-01	ci right 2.733011e-01	k: 236957	n:870000
KS ci ratio: 1.444319e-01	ci left: 7.848703e-04	ci right 9.081473e-04	k: 735	n:870000
DNAH10   870000 perm   780 sec   (1115 perm/sec)   p_kst 8.448276e-04   p_cons 2.723644e-01   p_joint 2.006897e-03

Joint ci ratio: 9.353235e-02	ci left: 1.898851e-03	ci right 2.086269e-03	k: 1752	n:880000
Cons ci ratio: 6.831005e-03	ci left: 2.713803e-01	ci right 2.732416e-01	k: 239633	n:880000
KS ci ratio: 1.434605e-01	ci left: 7.869057e-04	ci right 9.096000e-04	k: 745	n:880000
DNAH10   880000 perm   793 sec   (1110 perm/sec)   p_kst 8.465909e-04   p_cons 2.723102e-01   p_joint 1.990909e-03

Joint ci ratio: 9.297705e-02	ci left: 1.900561e-03	ci right 2.086973e-03	k: 1773	n:890000
Cons ci ratio: 6.792098e-03	ci left: 2.714102e-01	ci right 2.732610e-01	k: 242378	n:890000
KS ci ratio: 1.426974e-01	ci left: 7.867311e-04	ci right 9.086901e-04	k: 753	n:890000
DNAH10   890000 perm   806 sec   (1105 perm/sec)   p_kst 8.460674e-04   p_cons 2.723348e-01   p_joint 1.992135e-03

Joint ci ratio: 9.248316e-02	ci left: 1.900065e-03	ci right 2.085385e-03	k: 1792	n:900000
Cons ci ratio: 6.754645e-03	ci left: 2.713927e-01	ci right 2.732332e-01	k: 245081	n:900000
KS ci ratio: 1.419464e-01	ci left: 7.865620e-04	ci right 9.077988e-04	k: 761	n:900000
DNAH10   900000 perm   818 sec   (1100 perm/sec)   p_kst 8.455556e-04   p_cons 2.723122e-01   p_joint 1.991111e-03

Joint ci ratio: 9.197163e-02	ci left: 1.900657e-03	ci right 2.084954e-03	k: 1812	n:910000
Cons ci ratio: 6.720058e-03	ci left: 2.712429e-01	ci right 2.730729e-01	k: 247663	n:910000
KS ci ratio: 1.410240e-01	ci left: 7.885185e-04	ci right 9.092007e-04	k: 771	n:910000
DNAH10   910000 perm   831 sec   (1095 perm/sec)   p_kst 8.472527e-04   p_cons 2.721571e-01   p_joint 1.991209e-03

Joint ci ratio: 9.136866e-02	ci left: 1.905487e-03	ci right 2.088976e-03	k: 1836	n:920000
Cons ci ratio: 6.683631e-03	ci left: 2.712364e-01	ci right 2.730564e-01	k: 250374	n:920000
KS ci ratio: 1.397620e-01	ci left: 7.946307e-04	ci right 9.150694e-04	k: 785	n:920000
DNAH10   920000 perm   844 sec   (1090 perm/sec)   p_kst 8.532609e-04   p_cons 2.721457e-01   p_joint 1.995652e-03

Joint ci ratio: 9.264157e-02	ci left: 1.832468e-03	ci right 2.011517e-03	k: 1786	n:930000
Cons ci ratio: 6.647735e-03	ci left: 2.712333e-01	ci right 2.730434e-01	k: 253088	n:930000
KS ci ratio: 1.393198e-01	ci left: 7.912749e-04	ci right 9.107940e-04	k: 790	n:930000
DNAH10   930000 perm   858 sec   (1084 perm/sec)   p_kst 8.494624e-04   p_cons 2.721376e-01   p_joint 1.920430e-03

Joint ci ratio: 9.220414e-02	ci left: 1.830641e-03	ci right 2.008621e-03	k: 1803	n:940000
Cons ci ratio: 6.613406e-03	ci left: 2.711707e-01	ci right 2.729711e-01	k: 255746	n:940000
KS ci ratio: 1.385339e-01	ci left: 7.920988e-04	ci right 9.110117e-04	k: 799	n:940000
DNAH10   940000 perm   871 sec   (1079 perm/sec)   p_kst 8.500000e-04   p_cons 2.720702e-01   p_joint 1.918085e-03

Joint ci ratio: 9.149639e-02	ci left: 1.840168e-03	ci right 2.017628e-03	k: 1831	n:950000
Cons ci ratio: 6.578484e-03	ci left: 2.711769e-01	ci right 2.729677e-01	k: 258468	n:950000
KS ci ratio: 1.373370e-01	ci left: 7.979893e-04	ci right 9.166670e-04	k: 813	n:950000
DNAH10   950000 perm   884 sec   (1075 perm/sec)   p_kst 8.557895e-04   p_cons 2.720716e-01   p_joint 1.927368e-03

Joint ci ratio: 9.107491e-02	ci left: 1.838303e-03	ci right 2.014724e-03	k: 1848	n:960000
Cons ci ratio: 6.544161e-03	ci left: 2.711797e-01	ci right 2.729612e-01	k: 261187	n:960000
KS ci ratio: 1.368338e-01	ci left: 7.957125e-04	ci right 9.135827e-04	k: 819	n:960000
DNAH10   960000 perm   897 sec   (1070 perm/sec)   p_kst 8.531250e-04   p_cons 2.720698e-01   p_joint 1.925000e-03

Joint ci ratio: 9.070792e-02	ci left: 1.834464e-03	ci right 2.009769e-03	k: 1863	n:970000
Cons ci ratio: 6.509319e-03	ci left: 2.712464e-01	ci right 2.730188e-01	k: 263968	n:970000
KS ci ratio: 1.360069e-01	ci left: 7.974668e-04	ci right 9.148252e-04	k: 829	n:970000
DNAH10   970000 perm   911 sec   (1065 perm/sec)   p_kst 8.546392e-04   p_cons 2.721320e-01   p_joint 1.920619e-03

Joint ci ratio: 9.039354e-02	ci left: 1.828710e-03	ci right 2.002827e-03	k: 1876	n:980000
Cons ci ratio: 6.475111e-03	ci left: 2.713067e-01	ci right 2.730701e-01	k: 266744	n:980000
KS ci ratio: 1.355993e-01	ci left: 7.942580e-04	ci right 9.107656e-04	k: 834	n:980000
DNAH10   980000 perm   924 sec   (1060 perm/sec)   p_kst 8.510204e-04   p_cons 2.721878e-01   p_joint 1.914286e-03

Joint ci ratio: 9.343600e-02	ci left: 1.691806e-03	ci right 1.858606e-03	k: 1756	n:990000
Cons ci ratio: 6.442767e-03	ci left: 2.712840e-01	ci right 2.730385e-01	k: 269439	n:990000
KS ci ratio: 1.347147e-01	ci left: 7.969707e-04	ci right 9.130524e-04	k: 845	n:990000
DNAH10   990000 perm   938 sec   (1056 perm/sec)   p_kst 8.535354e-04   p_cons 2.721606e-01   p_joint 1.773737e-03

Joint ci ratio: 9.485344e-02	ci left: 1.624109e-03	ci right 1.786799e-03	k: 1704	n:1000000
Cons ci ratio: 6.410839e-03	ci left: 2.712659e-01	ci right 2.730115e-01	k: 272138	n:1000000
KS ci ratio: 1.337691e-01	ci left: 8.005980e-04	ci right 9.163246e-04	k: 857	n:1000000
DNAH10   1000000 perm   951 sec   (1051 perm/sec)   p_kst 8.570000e-04   p_cons 2.721380e-01   p_joint 1.704000e-03

Joint ci ratio: 9.419250e-02	ci left: 1.631230e-03	ci right 1.793432e-03	k: 1728	n:1010000
Cons ci ratio: 6.377802e-03	ci left: 2.713460e-01	ci right 2.730831e-01	k: 274936	n:1010000
KS ci ratio: 1.330730e-01	ci left: 8.012848e-04	ci right 9.164602e-04	k: 866	n:1010000
DNAH10   1010000 perm   965 sec   (1046 perm/sec)   p_kst 8.574257e-04   p_cons 2.722139e-01   p_joint 1.710891e-03

Joint ci ratio: 9.400287e-02	ci left: 1.621938e-03	ci right 1.782874e-03	k: 1735	n:1020000
Cons ci ratio: 6.346825e-03	ci left: 2.713276e-01	ci right 2.730561e-01	k: 277635	n:1020000
KS ci ratio: 1.325391e-01	ci left: 8.000638e-04	ci right 9.145659e-04	k: 873	n:1020000
DNAH10   1020000 perm   979 sec   (1042 perm/sec)   p_kst 8.558824e-04   p_cons 2.721912e-01   p_joint 1.700980e-03

Joint ci ratio: 9.376051e-02	ci left: 1.614724e-03	ci right 1.774507e-03	k: 1744	n:1030000
Cons ci ratio: 6.316557e-03	ci left: 2.712931e-01	ci right 2.730131e-01	k: 280317	n:1030000
KS ci ratio: 1.318619e-01	ci left: 8.007451e-04	ci right 9.147133e-04	k: 882	n:1030000
DNAH10   1030000 perm   993 sec   (1038 perm/sec)   p_kst 8.563107e-04   p_cons 2.721524e-01   p_joint 1.693204e-03

Joint ci ratio: 9.341337e-02	ci left: 1.611405e-03	ci right 1.770237e-03	k: 1757	n:1040000
Cons ci ratio: 6.285453e-03	ci left: 2.713390e-01	ci right 2.730508e-01	k: 283082	n:1040000
KS ci ratio: 1.314904e-01	ci left: 7.976948e-04	ci right 9.108841e-04	k: 887	n:1040000
DNAH10   1040000 perm   1006 sec   (1033 perm/sec)   p_kst 8.528846e-04   p_cons 2.721942e-01   p_joint 1.689423e-03

Joint ci ratio: 9.301747e-02	ci left: 1.610011e-03	ci right 1.767997e-03	k: 1772	n:1050000
Cons ci ratio: 6.255435e-03	ci left: 2.713441e-01	ci right 2.730477e-01	k: 285805	n:1050000
KS ci ratio: 1.310485e-01	ci left: 7.956243e-04	ci right 9.081109e-04	k: 893	n:1050000
DNAH10   1050000 perm   1020 sec   (1029 perm/sec)   p_kst 8.504762e-04   p_cons 2.721952e-01   p_joint 1.687619e-03

Joint ci ratio: 8.543622e-02	ci left: 1.897375e-03	ci right 2.067629e-03	k: 2100	n:1060000
Cons ci ratio: 6.225783e-03	ci left: 2.713528e-01	ci right 2.730484e-01	k: 288532	n:1060000
KS ci ratio: 1.306838e-01	ci left: 7.926809e-04	ci right 9.044152e-04	k: 898	n:1060000
DNAH10   1060000 perm   1034 sec   (1025 perm/sec)   p_kst 8.471698e-04   p_cons 2.722000e-01   p_joint 1.981132e-03

Joint ci ratio: 8.505254e-02	ci left: 1.897021e-03	ci right 2.066441e-03	k: 2119	n:1070000
Cons ci ratio: 6.196170e-03	ci left: 2.713857e-01	ci right 2.730734e-01	k: 291285	n:1070000
KS ci ratio: 1.301062e-01	ci left: 7.925054e-04	ci right 9.036831e-04	k: 906	n:1070000
DNAH10   1070000 perm   1049 sec   (1020 perm/sec)   p_kst 8.467290e-04   p_cons 2.722290e-01   p_joint 1.980374e-03

Joint ci ratio: 8.477332e-02	ci left: 1.892143e-03	ci right 2.060545e-03	k: 2133	n:1080000
Cons ci ratio: 6.166442e-03	ci left: 2.714523e-01	ci right 2.731323e-01	k: 294075	n:1080000
KS ci ratio: 1.293948e-01	ci left: 7.941262e-04	ci right 9.048753e-04	k: 916	n:1080000
DNAH10   1080000 perm   1063 sec   (1016 perm/sec)   p_kst 8.481481e-04   p_cons 2.722917e-01   p_joint 1.975000e-03

Joint ci ratio: 8.679426e-02	ci left: 1.786800e-03	ci right 1.949810e-03	k: 2035	n:1090000
Cons ci ratio: 6.138146e-03	ci left: 2.714526e-01	ci right 2.731248e-01	k: 296794	n:1090000
KS ci ratio: 1.286255e-01	ci left: 7.966067e-04	ci right 9.069909e-04	k: 927	n:1090000
DNAH10   1090000 perm   1077 sec   (1012 perm/sec)   p_kst 8.504587e-04   p_cons 2.722881e-01   p_joint 1.866972e-03

Joint ci ratio: 8.641314e-02	ci left: 1.786566e-03	ci right 1.948802e-03	k: 2053	n:1100000
Cons ci ratio: 6.110881e-03	ci left: 2.714111e-01	ci right 2.730756e-01	k: 299467	n:1100000
KS ci ratio: 1.282118e-01	ci left: 7.946441e-04	ci right 9.043752e-04	k: 933	n:1100000
DNAH10   1100000 perm   1092 sec   (1007 perm/sec)   p_kst 8.481818e-04   p_cons 2.722427e-01   p_joint 1.866364e-03

Joint ci ratio: 8.781709e-02	ci left: 1.713185e-03	ci right 1.871415e-03	k: 1988	n:1110000
Cons ci ratio: 6.084377e-03	ci left: 2.713442e-01	ci right 2.730011e-01	k: 302111	n:1110000
KS ci ratio: 1.278702e-01	ci left: 7.918453e-04	ci right 9.008765e-04	k: 938	n:1110000
DNAH10   1110000 perm   1106 sec   (1003 perm/sec)   p_kst 8.450450e-04   p_cons 2.721721e-01   p_joint 1.790991e-03

Joint ci ratio: 8.759747e-02	ci left: 1.706621e-03	ci right 1.863830e-03	k: 1998	n:1120000
Cons ci ratio: 6.056277e-03	ci left: 2.714053e-01	ci right 2.730548e-01	k: 304897	n:1120000
KS ci ratio: 1.269272e-01	ci left: 7.968770e-04	ci right 9.057310e-04	k: 952	n:1120000
DNAH10   1120000 perm   1121 sec   (999 perm/sec)   p_kst 8.500000e-04   p_cons 2.722295e-01   p_joint 1.783929e-03

Joint ci ratio: 8.722739e-02	ci left: 1.706234e-03	ci right 1.862709e-03	k: 2015	n:1130000
Cons ci ratio: 6.029854e-03	ci left: 2.713804e-01	ci right 2.730226e-01	k: 307587	n:1130000
KS ci ratio: 1.263320e-01	ci left: 7.975373e-04	ci right 9.059324e-04	k: 961	n:1130000
DNAH10   1130000 perm   1136 sec   (995 perm/sec)   p_kst 8.504425e-04   p_cons 2.722009e-01   p_joint 1.783186e-03

Joint ci ratio: 8.757690e-02	ci left: 1.677537e-03	ci right 1.832029e-03	k: 1999	n:1140000
Cons ci ratio: 6.004107e-03	ci left: 2.713340e-01	ci right 2.729689e-01	k: 310252	n:1140000
KS ci ratio: 1.257451e-01	ci left: 7.981872e-04	ci right 9.061291e-04	k: 970	n:1140000
DNAH10   1140000 perm   1151 sec   (991 perm/sec)   p_kst 8.508772e-04   p_cons 2.721509e-01   p_joint 1.753509e-03

Joint ci ratio: 8.831042e-02	ci left: 1.634884e-03	ci right 1.786774e-03	k: 1966	n:1150000
Cons ci ratio: 5.978622e-03	ci left: 2.712928e-01	ci right 2.729205e-01	k: 312922	n:1150000
KS ci ratio: 1.247846e-01	ci left: 8.038814e-04	ci right 9.117015e-04	k: 985	n:1150000
DNAH10   1150000 perm   1165 sec   (987 perm/sec)   p_kst 8.565217e-04   p_cons 2.721061e-01   p_joint 1.709565e-03

Joint ci ratio: 8.797570e-02	ci left: 1.633436e-03	ci right 1.784587e-03	k: 1981	n:1160000
Cons ci ratio: 5.953276e-03	ci left: 2.712644e-01	ci right 2.728850e-01	k: 315606	n:1160000
KS ci ratio: 1.242190e-01	ci left: 8.044684e-04	ci right 9.118422e-04	k: 994	n:1160000
DNAH10   1160000 perm   1180 sec   (983 perm/sec)   p_kst 8.568966e-04   p_cons 2.720741e-01   p_joint 1.707759e-03

Joint ci ratio: 8.764475e-02	ci left: 1.632014e-03	ci right 1.782436e-03	k: 1996	n:1170000
Cons ci ratio: 5.926856e-03	ci left: 2.713296e-01	ci right 2.729433e-01	k: 318399	n:1170000
KS ci ratio: 1.237844e-01	ci left: 8.033899e-04	ci right 9.102171e-04	k: 1001	n:1170000
DNAH10   1170000 perm   1196 sec   (979 perm/sec)   p_kst 8.555556e-04   p_cons 2.721359e-01   p_joint 1.705983e-03

Joint ci ratio: 8.749192e-02	ci left: 1.623985e-03	ci right 1.773393e-03	k: 2003	n:1180000
Cons ci ratio: 5.902009e-03	ci left: 2.713115e-01	ci right 2.729184e-01	k: 321095	n:1180000
KS ci ratio: 1.229283e-01	ci left: 8.080799e-04	ci right 9.147336e-04	k: 1015	n:1180000
DNAH10   1180000 perm   1211 sec   (975 perm/sec)   p_kst 8.601695e-04   p_cons 2.721144e-01   p_joint 1.697458e-03

Joint ci ratio: 8.849340e-02	ci left: 1.573354e-03	ci right 1.719845e-03	k: 1958	n:1190000
Cons ci ratio: 5.876761e-03	ci left: 2.713417e-01	ci right 2.729418e-01	k: 323848	n:1190000
KS ci ratio: 1.226271e-01	ci left: 8.053619e-04	ci right 9.113775e-04	k: 1020	n:1190000
DNAH10   1190000 perm   1226 sec   (971 perm/sec)   p_kst 8.571429e-04   p_cons 2.721412e-01   p_joint 1.645378e-03

Joint ci ratio: 8.840366e-02	ci left: 1.563502e-03	ci right 1.708921e-03	k: 1962	n:1200000
Cons ci ratio: 5.851897e-03	ci left: 2.713671e-01	ci right 2.729606e-01	k: 326596	n:1200000
KS ci ratio: 1.221496e-01	ci left: 8.051131e-04	ci right 9.106533e-04	k: 1028	n:1200000
DNAH10   1200000 perm   1241 sec   (967 perm/sec)   p_kst 8.566667e-04   p_cons 2.721633e-01   p_joint 1.635000e-03

Joint ci ratio: 8.813484e-02	ci left: 1.560278e-03	ci right 1.704934e-03	k: 1974	n:1210000
Cons ci ratio: 5.827527e-03	ci left: 2.713798e-01	ci right 2.729667e-01	k: 329329	n:1210000
KS ci ratio: 1.217951e-01	ci left: 8.032666e-04	ci right 9.082372e-04	k: 1034	n:1210000
DNAH10   1210000 perm   1257 sec   (963 perm/sec)   p_kst 8.545455e-04   p_cons 2.721727e-01   p_joint 1.631405e-03

Joint ci ratio: 8.330979e-02	ci left: 1.735992e-03	ci right 1.887700e-03	k: 2209	n:1220000
Cons ci ratio: 5.803123e-03	ci left: 2.714152e-01	ci right 2.729957e-01	k: 332090	n:1220000
KS ci ratio: 1.240969e-01	ci left: 7.664919e-04	ci right 8.686888e-04	k: 996	n:1220000
DNAH10   1220000 perm   1272 sec   (959 perm/sec)   p_kst 8.163934e-04   p_cons 2.722049e-01   p_joint 1.810656e-03

Joint ci ratio: 8.304730e-02	ci left: 1.733024e-03	ci right 1.883972e-03	k: 2223	n:1230000
Cons ci ratio: 5.778810e-03	ci left: 2.714647e-01	ci right 2.730388e-01	k: 334869	n:1230000
KS ci ratio: 1.236636e-01	ci left: 7.657749e-04	ci right 8.674937e-04	k: 1003	n:1230000
DNAH10   1230000 perm   1287 sec   (956 perm/sec)   p_kst 8.154472e-04   p_cons 2.722512e-01   p_joint 1.807317e-03

Joint ci ratio: 8.275024e-02	ci left: 1.731684e-03	ci right 1.881949e-03	k: 2239	n:1240000
Cons ci ratio: 5.756006e-03	ci left: 2.714304e-01	ci right 2.729981e-01	k: 337545	n:1240000
KS ci ratio: 1.231129e-01	ci left: 7.666334e-04	ci right 8.679797e-04	k: 1012	n:1240000
DNAH10   1240000 perm   1303 sec   (952 perm/sec)   p_kst 8.161290e-04   p_cons 2.722137e-01   p_joint 1.805645e-03

Joint ci ratio: 8.231027e-02	ci left: 1.736634e-03	ci right 1.886489e-03	k: 2263	n:1250000
Cons ci ratio: 5.731421e-03	ci left: 2.715382e-01	ci right 2.730997e-01	k: 340398	n:1250000
KS ci ratio: 1.224498e-01	ci left: 7.690301e-04	ci right 8.701059e-04	k: 1023	n:1250000
DNAH10   1250000 perm   1318 sec   (948 perm/sec)   p_kst 8.184000e-04   p_cons 2.723184e-01   p_joint 1.810400e-03

Joint ci ratio: 8.267751e-02	ci left: 1.707305e-03	ci right 1.855318e-03	k: 2243	n:1260000
Cons ci ratio: 5.708612e-03	ci left: 2.715427e-01	ci right 2.730980e-01	k: 343123	n:1260000
KS ci ratio: 1.219742e-01	ci left: 7.690818e-04	ci right 8.697435e-04	k: 1031	n:1260000
DNAH10   1260000 perm   1334 sec   (945 perm/sec)   p_kst 8.182540e-04   p_cons 2.723198e-01   p_joint 1.780159e-03

Joint ci ratio: 8.227505e-02	ci left: 1.710827e-03	ci right 1.858389e-03	k: 2265	n:1270000
Cons ci ratio: 5.685891e-03	ci left: 2.715598e-01	ci right 2.731090e-01	k: 345864	n:1270000
KS ci ratio: 1.212129e-01	ci left: 7.729510e-04	ci right 8.734425e-04	k: 1044	n:1270000
DNAH10   1270000 perm   1350 sec   (941 perm/sec)   p_kst 8.220472e-04   p_cons 2.723339e-01   p_joint 1.783465e-03

Joint ci ratio: 8.195020e-02	ci left: 1.711235e-03	ci right 1.858222e-03	k: 2283	n:1280000
Cons ci ratio: 5.663675e-03	ci left: 2.715602e-01	ci right 2.731033e-01	k: 348584	n:1280000
KS ci ratio: 1.206370e-01	ci left: 7.744885e-04	ci right 8.746674e-04	k: 1054	n:1280000
DNAH10   1280000 perm   1366 sec   (937 perm/sec)   p_kst 8.234375e-04   p_cons 2.723313e-01   p_joint 1.783594e-03

Joint ci ratio: 8.162917e-02	ci left: 1.711638e-03	ci right 1.858056e-03	k: 2301	n:1290000
Cons ci ratio: 5.642588e-03	ci left: 2.714994e-01	ci right 2.730365e-01	k: 351225	n:1290000
KS ci ratio: 1.204092e-01	ci left: 7.714920e-04	ci right 8.710813e-04	k: 1058	n:1290000
DNAH10   1290000 perm   1382 sec   (933 perm/sec)   p_kst 8.201550e-04   p_cons 2.722674e-01   p_joint 1.783721e-03

Joint ci ratio: 8.129434e-02	ci left: 1.712789e-03	ci right 1.858676e-03	k: 2320	n:1300000
Cons ci ratio: 5.620852e-03	ci left: 2.715019e-01	ci right 2.730330e-01	k: 353947	n:1300000
KS ci ratio: 1.197885e-01	ci left: 7.737648e-04	ci right 8.730962e-04	k: 1069	n:1300000
DNAH10   1300000 perm   1398 sec   (930 perm/sec)   p_kst 8.223077e-04   p_cons 2.722669e-01   p_joint 1.784615e-03

Joint ci ratio: 8.220465e-02	ci left: 1.661577e-03	ci right 1.804763e-03	k: 2269	n:1310000
Cons ci ratio: 5.599958e-03	ci left: 2.714623e-01	ci right 2.729875e-01	k: 356614	n:1310000
KS ci ratio: 1.192326e-01	ci left: 7.752636e-04	ci right 8.742930e-04	k: 1079	n:1310000
DNAH10   1310000 perm   1415 sec   (926 perm/sec)   p_kst 8.236641e-04   p_cons 2.722244e-01   p_joint 1.732061e-03

Joint ci ratio: 8.184480e-02	ci left: 1.663830e-03	ci right 1.806552e-03	k: 2289	n:1320000
Cons ci ratio: 5.578388e-03	ci left: 2.714878e-01	ci right 2.730072e-01	k: 359366	n:1320000
KS ci ratio: 1.187934e-01	ci left: 7.752706e-04	ci right 8.739105e-04	k: 1087	n:1320000
DNAH10   1320000 perm   1431 sec   (922 perm/sec)   p_kst 8.234848e-04   p_cons 2.722470e-01   p_joint 1.734091e-03

Joint ci ratio: 8.154271e-02	ci left: 1.663841e-03	ci right 1.806012e-03	k: 2306	n:1330000
Cons ci ratio: 5.557973e-03	ci left: 2.714482e-01	ci right 2.729618e-01	k: 362032	n:1330000
KS ci ratio: 1.183591e-01	ci left: 7.752781e-04	ci right 8.735331e-04	k: 1095	n:1330000
DNAH10   1330000 perm   1448 sec   (919 perm/sec)   p_kst 8.233083e-04   p_cons 2.722045e-01   p_joint 1.733835e-03

Joint ci ratio: 8.134919e-02	ci left: 1.659466e-03	ci right 1.800911e-03	k: 2317	n:1340000
Cons ci ratio: 5.537300e-03	ci left: 2.714435e-01	ci right 2.729515e-01	k: 364744	n:1340000
KS ci ratio: 1.176631e-01	ci left: 7.789077e-04	ci right 8.770019e-04	k: 1108	n:1340000
DNAH10   1340000 perm   1464 sec   (915 perm/sec)   p_kst 8.268657e-04   p_cons 2.721970e-01   p_joint 1.729104e-03

Joint ci ratio: 8.108732e-02	ci left: 1.658059e-03	ci right 1.798907e-03	k: 2332	n:1350000
Cons ci ratio: 5.516475e-03	ci left: 2.714663e-01	ci right 2.729687e-01	k: 367493	n:1350000
KS ci ratio: 1.172936e-01	ci left: 7.781708e-04	ci right 8.758431e-04	k: 1115	n:1350000
DNAH10   1350000 perm   1481 sec   (912 perm/sec)   p_kst 8.259259e-04   p_cons 2.722170e-01   p_joint 1.727407e-03

Joint ci ratio: 8.063897e-02	ci left: 1.664598e-03	ci right 1.805184e-03	k: 2358	n:1360000
Cons ci ratio: 5.496331e-03	ci left: 2.714565e-01	ci right 2.729533e-01	k: 370198	n:1360000
KS ci ratio: 1.164614e-01	ci left: 7.838699e-04	ci right 8.815114e-04	k: 1131	n:1360000
DNAH10   1360000 perm   1497 sec   (908 perm/sec)   p_kst 8.316176e-04   p_cons 2.722044e-01   p_joint 1.733824e-03

Joint ci ratio: 8.103617e-02	ci left: 1.635998e-03	ci right 1.774881e-03	k: 2335	n:1370000
Cons ci ratio: 5.476700e-03	ci left: 2.714256e-01	ci right 2.729169e-01	k: 372874	n:1370000
KS ci ratio: 1.161540e-01	ci left: 7.824003e-04	ci right 8.795839e-04	k: 1137	n:1370000
DNAH10   1370000 perm   1514 sec   (905 perm/sec)   p_kst 8.299270e-04   p_cons 2.721708e-01   p_joint 1.704380e-03

Joint ci ratio: 8.077730e-02	ci left: 1.634793e-03	ci right 1.773109e-03	k: 2350	n:1380000
Cons ci ratio: 5.456309e-03	ci left: 2.714655e-01	ci right 2.729514e-01	k: 375647	n:1380000
KS ci ratio: 1.157479e-01	ci left: 7.823597e-04	ci right 8.791753e-04	k: 1145	n:1380000
DNAH10   1380000 perm   1531 sec   (901 perm/sec)   p_kst 8.297101e-04   p_cons 2.722080e-01   p_joint 1.702899e-03

Joint ci ratio: 7.619147e-02	ci left: 1.828286e-03	ci right 1.973802e-03	k: 2641	n:1390000
Cons ci ratio: 5.436617e-03	ci left: 2.714702e-01	ci right 2.729508e-01	k: 378372	n:1390000
KS ci ratio: 1.153460e-01	ci left: 7.823203e-04	ci right 8.787720e-04	k: 1153	n:1390000
DNAH10   1390000 perm   1548 sec   (898 perm/sec)   p_kst 8.294964e-04   p_cons 2.722101e-01   p_joint 1.900000e-03

Joint ci ratio: 7.597621e-02	ci left: 1.825737e-03	ci right 1.970622e-03	k: 2656	n:1400000
Cons ci ratio: 5.417382e-03	ci left: 2.714571e-01	ci right 2.729324e-01	k: 381072	n:1400000
KS ci ratio: 1.150971e-01	ci left: 7.802007e-04	ci right 8.761694e-04	k: 1158	n:1400000
DNAH10   1400000 perm   1565 sec   (895 perm/sec)   p_kst 8.271429e-04   p_cons 2.721943e-01   p_joint 1.897143e-03

Joint ci ratio: 7.772544e-02	ci left: 1.730705e-03	ci right 1.871354e-03	k: 2538	n:1410000
Cons ci ratio: 5.398079e-03	ci left: 2.714640e-01	ci right 2.729341e-01	k: 383800	n:1410000
KS ci ratio: 1.146528e-01	ci left: 7.808670e-04	ci right 8.765217e-04	k: 1167	n:1410000
DNAH10   1410000 perm   1582 sec   (891 perm/sec)   p_kst 8.276596e-04   p_cons 2.721986e-01   p_joint 1.800000e-03

Joint ci ratio: 7.736051e-02	ci left: 1.735091e-03	ci right 1.875404e-03	k: 2562	n:1420000
Cons ci ratio: 5.379669e-03	ci left: 2.714202e-01	ci right 2.728850e-01	k: 386456	n:1420000
KS ci ratio: 1.141650e-01	ci left: 7.822087e-04	ci right 8.775927e-04	k: 1177	n:1420000
DNAH10   1420000 perm   1599 sec   (888 perm/sec)   p_kst 8.288732e-04   p_cons 2.721521e-01   p_joint 1.804225e-03

Joint ci ratio: 7.704544e-02	ci left: 1.737359e-03	ci right 1.877258e-03	k: 2583	n:1430000
Cons ci ratio: 5.360613e-03	ci left: 2.714385e-01	ci right 2.728981e-01	k: 389200	n:1430000
KS ci ratio: 1.137793e-01	ci left: 7.821736e-04	ci right 8.772095e-04	k: 1185	n:1430000
DNAH10   1430000 perm   1616 sec   (885 perm/sec)   p_kst 8.286713e-04   p_cons 2.721678e-01   p_joint 1.806294e-03

Joint ci ratio: 7.795793e-02	ci left: 1.684433e-03	ci right 1.821750e-03	k: 2523	n:1440000
Cons ci ratio: 5.341515e-03	ci left: 2.714745e-01	ci right 2.729292e-01	k: 391970	n:1440000
KS ci ratio: 1.134451e-01	ci left: 7.814648e-04	ci right 8.761170e-04	k: 1192	n:1440000
DNAH10   1440000 perm   1634 sec   (882 perm/sec)   p_kst 8.277778e-04   p_cons 2.722014e-01   p_joint 1.752083e-03

Joint ci ratio: 7.760500e-02	ci left: 1.688370e-03	ci right 1.825356e-03	k: 2546	n:1450000
Cons ci ratio: 5.323148e-03	ci left: 2.714708e-01	ci right 2.729204e-01	k: 394683	n:1450000
KS ci ratio: 1.130666e-01	ci left: 7.814363e-04	ci right 8.757483e-04	k: 1200	n:1450000
DNAH10   1450000 perm   1651 sec   (878 perm/sec)   p_kst 8.275862e-04   p_cons 2.721952e-01   p_joint 1.755862e-03

Joint ci ratio: 7.737755e-02	ci left: 1.686881e-03	ci right 1.823327e-03	k: 2561	n:1460000
Cons ci ratio: 5.304226e-03	ci left: 2.715226e-01	ci right 2.729673e-01	k: 397477	n:1460000
KS ci ratio: 1.128790e-01	ci left: 7.787463e-04	ci right 8.725672e-04	k: 1204	n:1460000
DNAH10   1460000 perm   1668 sec   (875 perm/sec)   p_kst 8.246575e-04   p_cons 2.722445e-01   p_joint 1.754110e-03

Joint ci ratio: 7.716709e-02	ci left: 1.684745e-03	ci right 1.820631e-03	k: 2575	n:1470000
Cons ci ratio: 5.286149e-03	ci left: 2.715255e-01	ci right 2.729652e-01	k: 400200	n:1470000
KS ci ratio: 1.125991e-01	ci left: 7.774152e-04	ci right 8.708280e-04	k: 1210	n:1470000
DNAH10   1470000 perm   1686 sec   (872 perm/sec)   p_kst 8.231293e-04   p_cons 2.722449e-01   p_joint 1.751701e-03

Joint ci ratio: 7.686920e-02	ci left: 1.686615e-03	ci right 1.822103e-03	k: 2595	n:1480000
Cons ci ratio: 5.267581e-03	ci left: 2.715789e-01	ci right 2.730139e-01	k: 402998	n:1480000
KS ci ratio: 1.122290e-01	ci left: 7.774158e-04	ci right 8.705014e-04	k: 1218	n:1480000
DNAH10   1480000 perm   1704 sec   (869 perm/sec)   p_kst 8.229730e-04   p_cons 2.722959e-01   p_joint 1.753378e-03

Joint ci ratio: 7.685483e-02	ci left: 1.675953e-03	ci right 1.810559e-03	k: 2596	n:1490000
Cons ci ratio: 5.249981e-03	ci left: 2.715733e-01	ci right 2.730034e-01	k: 405709	n:1490000
KS ci ratio: 1.119082e-01	ci left: 7.767645e-04	ci right 8.694887e-04	k: 1225	n:1490000
DNAH10   1490000 perm   1721 sec   (866 perm/sec)   p_kst 8.221477e-04   p_cons 2.722879e-01   p_joint 1.742282e-03

Joint ci ratio: 7.658984e-02	ci left: 1.676550e-03	ci right 1.810719e-03	k: 2614	n:1500000
Cons ci ratio: 5.232222e-03	ci left: 2.715931e-01	ci right 2.730185e-01	k: 408458	n:1500000
KS ci ratio: 1.115901e-01	ci left: 7.761223e-04	ci right 8.684892e-04	k: 1232	n:1500000
DNAH10   1500000 perm   1739 sec   (862 perm/sec)   p_kst 8.213333e-04   p_cons 2.723053e-01   p_joint 1.742667e-03

Joint ci ratio: 7.637118e-02	ci left: 1.675191e-03	ci right 1.808851e-03	k: 2629	n:1510000
Cons ci ratio: 5.215235e-03	ci left: 2.715676e-01	ci right 2.729882e-01	k: 411139	n:1510000
KS ci ratio: 1.113197e-01	ci left: 7.748452e-04	ci right 8.668219e-04	k: 1238	n:1510000
DNAH10   1510000 perm   1757 sec   (859 perm/sec)   p_kst 8.198675e-04   p_cons 2.722775e-01   p_joint 1.741060e-03

Joint ci ratio: 7.670835e-02	ci left: 1.649327e-03	ci right 1.781530e-03	k: 2606	n:1520000
Cons ci ratio: 5.198256e-03	ci left: 2.715543e-01	ci right 2.729702e-01	k: 413838	n:1520000
KS ci ratio: 1.109621e-01	ci left: 7.748643e-04	ci right 8.665285e-04	k: 1246	n:1520000
DNAH10   1520000 perm   1775 sec   (856 perm/sec)   p_kst 8.197368e-04   p_cons 2.722618e-01   p_joint 1.714474e-03

Joint ci ratio: 7.640116e-02	ci left: 1.652010e-03	ci right 1.783875e-03	k: 2627	n:1530000
Cons ci ratio: 5.181007e-03	ci left: 2.715745e-01	ci right 2.729858e-01	k: 416588	n:1530000
KS ci ratio: 1.105197e-01	ci left: 7.761548e-04	ci right 8.675818e-04	k: 1256	n:1530000
DNAH10   1530000 perm   1793 sec   (853 perm/sec)   p_kst 8.209150e-04   p_cons 2.722797e-01   p_joint 1.716993e-03

Joint ci ratio: 7.618410e-02	ci left: 1.650837e-03	ci right 1.782217e-03	k: 2642	n:1540000
Cons ci ratio: 5.164224e-03	ci left: 2.715717e-01	ci right 2.729785e-01	k: 419303	n:1540000
KS ci ratio: 1.102133e-01	ci left: 7.755348e-04	ci right 8.666191e-04	k: 1263	n:1540000
DNAH10   1540000 perm   1812 sec   (850 perm/sec)   p_kst 8.201299e-04   p_cons 2.722747e-01   p_joint 1.715584e-03

Joint ci ratio: 7.594027e-02	ci left: 1.650946e-03	ci right 1.781895e-03	k: 2659	n:1550000
Cons ci ratio: 5.147779e-03	ci left: 2.715555e-01	ci right 2.729576e-01	k: 421997	n:1550000
KS ci ratio: 1.099094e-01	ci left: 7.749232e-04	ci right 8.656684e-04	k: 1270	n:1550000
DNAH10   1550000 perm   1830 sec   (847 perm/sec)   p_kst 8.193548e-04   p_cons 2.722561e-01   p_joint 1.715484e-03

Joint ci ratio: 7.564218e-02	ci left: 1.653569e-03	ci right 1.784189e-03	k: 2680	n:1560000
Cons ci ratio: 5.131673e-03	ci left: 2.715254e-01	ci right 2.729229e-01	k: 424669	n:1560000
KS ci ratio: 1.096081e-01	ci left: 7.743197e-04	ci right 8.647296e-04	k: 1277	n:1560000
DNAH10   1560000 perm   1848 sec   (844 perm/sec)   p_kst 8.185897e-04   p_cons 2.722237e-01   p_joint 1.717949e-03

Joint ci ratio: 7.541750e-02	ci left: 1.653035e-03	ci right 1.783209e-03	k: 2696	n:1570000
Cons ci ratio: 5.115035e-03	ci left: 2.715484e-01	ci right 2.729416e-01	k: 427424	n:1570000
KS ci ratio: 1.091817e-01	ci left: 7.755829e-04	ci right 8.657654e-04	k: 1287	n:1570000
DNAH10   1570000 perm   1866 sec   (841 perm/sec)   p_kst 8.197452e-04   p_cons 2.722446e-01   p_joint 1.717197e-03

Joint ci ratio: 7.266299e-02	ci left: 1.771786e-03	ci right 1.906000e-03	k: 2904	n:1580000
Cons ci ratio: 5.099119e-03	ci left: 2.715276e-01	ci right 2.729163e-01	k: 430110	n:1580000
KS ci ratio: 1.087602e-01	ci left: 7.768308e-04	ci right 8.667873e-04	k: 1297	n:1580000
DNAH10   1580000 perm   1885 sec   (838 perm/sec)   p_kst 8.208861e-04   p_cons 2.722215e-01   p_joint 1.837975e-03

Joint ci ratio: 7.248863e-02	ci left: 1.769288e-03	ci right 1.902977e-03	k: 2918	n:1590000
Cons ci ratio: 5.083238e-03	ci left: 2.715158e-01	ci right 2.729001e-01	k: 432810	n:1590000
KS ci ratio: 1.084682e-01	ci left: 7.762279e-04	ci right 8.658579e-04	k: 1304	n:1590000
DNAH10   1590000 perm   1903 sec   (835 perm/sec)   p_kst 8.201258e-04   p_cons 2.722075e-01   p_joint 1.835220e-03

Joint ci ratio: 7.229083e-02	ci left: 1.768049e-03	ci right 1.901265e-03	k: 2934	n:1600000
Cons ci ratio: 5.067561e-03	ci left: 2.714998e-01	ci right 2.728798e-01	k: 435503	n:1600000
KS ci ratio: 1.081785e-01	ci left: 7.756330e-04	ci right 8.649398e-04	k: 1311	n:1600000
DNAH10   1600000 perm   1922 sec   (833 perm/sec)   p_kst 8.193750e-04   p_cons 2.721894e-01   p_joint 1.833750e-03

Joint ci ratio: 7.199693e-02	ci left: 1.771705e-03	ci right 1.904631e-03	k: 2958	n:1610000
Cons ci ratio: 5.051283e-03	ci left: 2.715424e-01	ci right 2.729181e-01	k: 438290	n:1610000
KS ci ratio: 1.077685e-01	ci left: 7.768589e-04	ci right 8.659464e-04	k: 1321	n:1610000
DNAH10   1610000 perm   1941 sec   (830 perm/sec)   p_kst 8.204969e-04   p_cons 2.722298e-01   p_joint 1.837267e-03

Joint ci ratio: 7.171864e-02	ci left: 1.774711e-03	ci right 1.907327e-03	k: 2981	n:1620000
Cons ci ratio: 5.035522e-03	ci left: 2.715560e-01	ci right 2.729275e-01	k: 441031	n:1620000
KS ci ratio: 1.074035e-01	ci left: 7.774695e-04	ci right 8.663060e-04	k: 1330	n:1620000
DNAH10   1620000 perm   1960 sec   (827 perm/sec)   p_kst 8.209877e-04   p_cons 2.722414e-01   p_joint 1.840123e-03

Joint ci ratio: 7.144355e-02	ci left: 1.777682e-03	ci right 1.909988e-03	k: 3004	n:1630000
Cons ci ratio: 5.019822e-03	ci left: 2.715763e-01	ci right 2.729436e-01	k: 443783	n:1630000
KS ci ratio: 1.069225e-01	ci left: 7.798644e-04	ci right 8.685504e-04	k: 1342	n:1630000
DNAH10   1630000 perm   1979 sec   (824 perm/sec)   p_kst 8.233129e-04   p_cons 2.722595e-01   p_joint 1.842945e-03

Joint ci ratio: 7.111280e-02	ci left: 1.783611e-03	ci right 1.915719e-03	k: 3032	n:1640000
Cons ci ratio: 5.004368e-03	ci left: 2.715884e-01	ci right 2.729515e-01	k: 446522	n:1640000
KS ci ratio: 1.065265e-01	ci left: 7.810440e-04	ci right 8.695146e-04	k: 1352	n:1640000
DNAH10   1640000 perm   1998 sec   (821 perm/sec)   p_kst 8.243902e-04   p_cons 2.722695e-01   p_joint 1.848780e-03

Joint ci ratio: 6.986649e-02	ci left: 1.837699e-03	ci right 1.971331e-03	k: 3141	n:1650000
Cons ci ratio: 4.989689e-03	ci left: 2.715500e-01	ci right 2.729090e-01	k: 449178	n:1650000
KS ci ratio: 1.061740e-01	ci left: 7.816199e-04	ci right 8.698443e-04	k: 1361	n:1650000
DNAH10   1650000 perm   2016 sec   (818 perm/sec)   p_kst 8.248485e-04   p_cons 2.722291e-01   p_joint 1.903636e-03

Joint ci ratio: 6.960107e-02	ci left: 1.840835e-03	ci right 1.974166e-03	k: 3165	n:1660000
Cons ci ratio: 4.974526e-03	ci left: 2.715609e-01	ci right 2.729158e-01	k: 451915	n:1660000
KS ci ratio: 1.057477e-01	ci left: 7.833623e-04	ci right 8.714063e-04	k: 1372	n:1660000
DNAH10   1660000 perm   2035 sec   (816 perm/sec)   p_kst 8.265060e-04   p_cons 2.722380e-01   p_joint 1.906627e-03

Joint ci ratio: 6.944780e-02	ci left: 1.838049e-03	ci right 1.970873e-03	k: 3179	n:1670000
Cons ci ratio: 4.959957e-03	ci left: 2.715352e-01	ci right 2.728859e-01	k: 454591	n:1670000
KS ci ratio: 1.054028e-01	ci left: 7.839184e-04	ci right 8.717198e-04	k: 1381	n:1670000
DNAH10   1670000 perm   2055 sec   (813 perm/sec)   p_kst 8.269461e-04   p_cons 2.722102e-01   p_joint 1.903593e-03

Joint ci ratio: 6.923042e-02	ci left: 1.838807e-03	ci right 1.971253e-03	k: 3199	n:1680000
Cons ci ratio: 4.944328e-03	ci left: 2.716050e-01	ci right 2.729518e-01	k: 457427	n:1680000
KS ci ratio: 1.050612e-01	ci left: 7.844684e-04	ci right 8.720291e-04	k: 1390	n:1680000
DNAH10   1680000 perm   2074 sec   (810 perm/sec)   p_kst 8.273810e-04   p_cons 2.722780e-01   p_joint 1.904167e-03

Joint ci ratio: 7.116177e-02	ci left: 1.728515e-03	ci right 1.856634e-03	k: 3028	n:1690000
Cons ci ratio: 4.929176e-03	ci left: 2.716473e-01	ci right 2.729902e-01	k: 460218	n:1690000
KS ci ratio: 1.041660e-01	ci left: 7.936564e-04	ci right 8.814415e-04	k: 1414	n:1690000
DNAH10   1690000 perm   2093 sec   (808 perm/sec)   p_kst 8.366864e-04   p_cons 2.723183e-01   p_joint 1.791716e-03

Joint ci ratio: 7.100966e-02	ci left: 1.725858e-03	ci right 1.853496e-03	k: 3041	n:1700000
Cons ci ratio: 4.914804e-03	ci left: 2.716374e-01	ci right 2.729763e-01	k: 462921	n:1700000
KS ci ratio: 1.037633e-01	ci left: 7.952902e-04	ci right 8.828953e-04	k: 1425	n:1700000
DNAH10   1700000 perm   2112 sec   (805 perm/sec)   p_kst 8.382353e-04   p_cons 2.723065e-01   p_joint 1.788824e-03

Joint ci ratio: 7.011518e-02	ci left: 1.760576e-03	ci right 1.889074e-03	k: 3119	n:1710000
Cons ci ratio: 4.855129e-03	ci left: 2.753313e-01	ci right 2.766718e-01	k: 471962	n:1710000
KS ci ratio: 1.034735e-01	ci left: 7.951965e-04	ci right 8.825317e-04	k: 1433	n:1710000
DNAH10   1710000 perm   2132 sec   (802 perm/sec)   p_kst 8.380117e-04   p_cons 2.760012e-01   p_joint 1.823977e-03

Joint ci ratio: 7.098703e-02	ci left: 1.706932e-03	ci right 1.833127e-03	k: 3043	n:1720000
Cons ci ratio: 4.841101e-03	ci left: 2.753245e-01	ci right 2.766612e-01	k: 474707	n:1720000
KS ci ratio: 1.031146e-01	ci left: 7.962370e-04	ci right 8.833648e-04	k: 1443	n:1720000
DNAH10   1720000 perm   2151 sec   (799 perm/sec)   p_kst 8.389535e-04   p_cons 2.759924e-01   p_joint 1.769186e-03

Joint ci ratio: 7.078964e-02	ci left: 1.706718e-03	ci right 1.832532e-03	k: 3060	n:1730000
Cons ci ratio: 4.826719e-03	ci left: 2.753571e-01	ci right 2.766899e-01	k: 477520	n:1730000
KS ci ratio: 1.028301e-01	ci left: 7.961397e-04	ci right 8.830020e-04	k: 1451	n:1730000
DNAH10   1730000 perm   2171 sec   (797 perm/sec)   p_kst 8.387283e-04   p_cons 2.760231e-01   p_joint 1.768786e-03

Joint ci ratio: 7.104622e-02	ci left: 1.684489e-03	ci right 1.809133e-03	k: 3038	n:1740000
Cons ci ratio: 4.813100e-03	ci left: 2.753365e-01	ci right 2.766654e-01	k: 480241	n:1740000
KS ci ratio: 1.024778e-01	ci left: 7.971638e-04	ci right 8.838219e-04	k: 1461	n:1740000
DNAH10   1740000 perm   2190 sec   (794 perm/sec)   p_kst 8.396552e-04   p_cons 2.760006e-01   p_joint 1.745977e-03

Joint ci ratio: 7.091812e-02	ci left: 1.681037e-03	ci right 1.805193e-03	k: 3049	n:1750000
Cons ci ratio: 4.799802e-03	ci left: 2.752990e-01	ci right 2.766241e-01	k: 482932	n:1750000
KS ci ratio: 1.022334e-01	ci left: 7.965061e-04	ci right 8.828738e-04	k: 1468	n:1750000
DNAH10   1750000 perm   2210 sec   (792 perm/sec)   p_kst 8.388571e-04   p_cons 2.759611e-01   p_joint 1.742286e-03

Joint ci ratio: 7.076756e-02	ci left: 1.678741e-03	ci right 1.802453e-03	k: 3062	n:1760000
Cons ci ratio: 4.786485e-03	ci left: 2.752727e-01	ci right 2.765940e-01	k: 485642	n:1760000
KS ci ratio: 1.021293e-01	ci left: 7.936414e-04	ci right 8.796057e-04	k: 1471	n:1760000
DNAH10   1760000 perm   2230 sec   (789 perm/sec)   p_kst 8.357955e-04   p_cons 2.759330e-01   p_joint 1.739773e-03

Joint ci ratio: 7.056052e-02	ci left: 1.679247e-03	ci right 1.802619e-03	k: 3080	n:1770000
Cons ci ratio: 4.773399e-03	ci left: 2.752365e-01	ci right 2.765540e-01	k: 488334	n:1770000
KS ci ratio: 1.018874e-01	ci left: 7.930115e-04	ci right 8.786918e-04	k: 1478	n:1770000
DNAH10   1770000 perm   2250 sec   (787 perm/sec)   p_kst 8.350282e-04   p_cons 2.758949e-01   p_joint 1.740113e-03

Joint ci ratio: 7.081458e-02	ci left: 1.657671e-03	ci right 1.779915e-03	k: 3058	n:1780000
Cons ci ratio: 4.759898e-03	ci left: 2.752446e-01	ci right 2.765584e-01	k: 491104	n:1780000
KS ci ratio: 1.016129e-01	ci left: 7.929364e-04	ci right 8.783641e-04	k: 1486	n:1780000
DNAH10   1780000 perm   2270 sec   (784 perm/sec)   p_kst 8.348315e-04   p_cons 2.759011e-01   p_joint 1.717978e-03

Joint ci ratio: 7.114182e-02	ci left: 1.633045e-03	ci right 1.754052e-03	k: 3030	n:1790000
Cons ci ratio: 4.746298e-03	ci left: 2.752704e-01	ci right 2.765806e-01	k: 493906	n:1790000
KS ci ratio: 1.012391e-01	ci left: 7.944960e-04	ci right 8.797580e-04	k: 1497	n:1790000
DNAH10   1790000 perm   2290 sec   (782 perm/sec)   p_kst 8.363128e-04   p_cons 2.759251e-01   p_joint 1.692737e-03

Joint ci ratio: 7.091984e-02	ci left: 1.634340e-03	ci right 1.755050e-03	k: 3049	n:1800000
Cons ci ratio: 4.733124e-03	ci left: 2.752699e-01	ci right 2.765764e-01	k: 496661	n:1800000
KS ci ratio: 1.008359e-01	ci left: 7.965803e-04	ci right 8.817055e-04	k: 1509	n:1800000
DNAH10   1800000 perm   2311 sec   (779 perm/sec)   p_kst 8.383333e-04   p_cons 2.759228e-01   p_joint 1.693889e-03

Joint ci ratio: 7.115425e-02	ci left: 1.614457e-03	ci right 1.734108e-03	k: 3029	n:1810000
Cons ci ratio: 4.720358e-03	ci left: 2.752440e-01	ci right 2.765468e-01	k: 499370	n:1810000
KS ci ratio: 1.004706e-01	ci left: 7.981037e-04	ci right 8.830645e-04	k: 1520	n:1810000
DNAH10   1810000 perm   2331 sec   (777 perm/sec)   p_kst 8.397790e-04   p_cons 2.758950e-01   p_joint 1.673481e-03

Joint ci ratio: 7.100217e-02	ci left: 1.612602e-03	ci right 1.731850e-03	k: 3042	n:1820000
Cons ci ratio: 4.707761e-03	ci left: 2.752128e-01	ci right 2.765121e-01	k: 502069	n:1820000
KS ci ratio: 1.001746e-01	ci left: 7.985395e-04	ci right 8.832815e-04	k: 1529	n:1820000
DNAH10   1820000 perm   2351 sec   (774 perm/sec)   p_kst 8.401099e-04   p_cons 2.758621e-01   p_joint 1.671429e-03

Joint ci ratio: 7.085106e-02	ci left: 1.610768e-03	ci right 1.729616e-03	k: 3055	n:1830000
Cons ci ratio: 4.694872e-03	ci left: 2.752154e-01	ci right 2.765110e-01	k: 504829	n:1830000
KS ci ratio: 9.991374e-02	ci left: 7.984381e-04	ci right 8.829358e-04	k: 1537	n:1830000
DNAH10   1830000 perm   2371 sec   (772 perm/sec)   p_kst 8.398907e-04   p_cons 2.758628e-01   p_joint 1.669399e-03

Outputting figure to mutsig2_images.part000000000051/DNAH10.25_13728_1830000_0.00083989_0.27586_0.0016694.png
                gene_name: DNAH10
               theta_stop: 0.100 
                    nperm: 1830000 
                     p_ks: 0.00084 
        ci_ks_bounds_left: 0.00080 
       ci_ks_bounds_right: 0.00088 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.0017 
     ci_joint_bounds_left: 0.0016 
    ci_joint_bounds_right: 0.0017 

Current progress: 19 percent done.
DNAH3
Processing conservation and coverage...
79% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.687064e-02	ci left: 6.710580e-01	ci right 6.894369e-01	k: 6803	n:10000
Cons ci ratio: 7.756954e-03	ci left: 9.584845e-01	ci right 9.660432e-01	k: 9624	n:10000
KS ci ratio: 5.288510e-02	ci left: 3.451178e-01	ci right 3.639670e-01	k: 3545	n:10000
DNAH3   10000 perm   4 sec   (2400 perm/sec)   p_kst 3.545000e-01   p_cons 9.624000e-01   p_joint 6.803000e-01

Outputting figure to mutsig2_images.part000000000051/DNAH3.16_12598_10000_0.3545_0.9624_0.6803.png
                gene_name: DNAH3
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 22 percent done.
DNAH2
Processing conservation and coverage...
73% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.208622e-01	ci left: 6.794980e-03	ci right 1.049980e-02	k: 85	n:10000
Cons ci ratio: 3.428867e-01	ci left: 1.068957e-02	ci right 1.520079e-02	k: 128	n:10000
KS ci ratio: 1.285258e-01	ci left: 7.960546e-02	ci right 9.063764e-02	k: 850	n:10000
DNAH2   10000 perm   5 sec   (2179 perm/sec)   p_kst 8.500000e-02   p_cons 1.280000e-02   p_joint 8.500000e-03

Joint ci ratio: 2.249930e-01	ci left: 1.326674e-02	ci right 1.667640e-02	k: 298	n:20000
Cons ci ratio: 2.257608e-01	ci left: 1.317232e-02	ci right 1.657086e-02	k: 296	n:20000
KS ci ratio: 9.314475e-02	ci left: 7.754845e-02	ci right 8.517378e-02	k: 1626	n:20000
DNAH2   20000 perm   10 sec   (2065 perm/sec)   p_kst 8.130000e-02   p_cons 1.480000e-02   p_joint 1.490000e-02

Joint ci ratio: 1.597865e-01	ci left: 1.809339e-02	ci right 2.126726e-02	k: 589	n:30000
Cons ci ratio: 1.887932e-01	ci left: 1.282815e-02	ci right 1.553381e-02	k: 424	n:30000
KS ci ratio: 7.584167e-02	ci left: 7.865721e-02	ci right 8.489074e-02	k: 2452	n:30000
DNAH2   30000 perm   15 sec   (2017 perm/sec)   p_kst 8.173333e-02   p_cons 1.413333e-02   p_joint 1.963333e-02

Joint ci ratio: 1.696272e-01	ci left: 1.205658e-02	ci right 1.431491e-02	k: 526	n:40000
Cons ci ratio: 1.631599e-01	ci left: 1.306341e-02	ci right 1.540789e-02	k: 568	n:40000
KS ci ratio: 6.514742e-02	ci left: 8.028962e-02	ci right 8.572110e-02	k: 3319	n:40000
DNAH2   40000 perm   20 sec   (1986 perm/sec)   p_kst 8.297500e-02   p_cons 1.420000e-02   p_joint 1.315000e-02

Joint ci ratio: 1.426395e-01	ci left: 1.381771e-02	ci right 1.595915e-02	k: 743	n:50000
Cons ci ratio: 1.460653e-01	ci left: 1.316194e-02	ci right 1.525502e-02	k: 709	n:50000
KS ci ratio: 5.797319e-02	ci left: 8.134600e-02	ci right 8.622245e-02	k: 4188	n:50000
DNAH2   50000 perm   25 sec   (1963 perm/sec)   p_kst 8.376000e-02   p_cons 1.418000e-02   p_joint 1.486000e-02

Joint ci ratio: 1.406342e-01	ci left: 1.188366e-02	ci right 1.369725e-02	k: 766	n:60000
Cons ci ratio: 1.335778e-01	ci left: 1.320405e-02	ci right 1.511003e-02	k: 848	n:60000
KS ci ratio: 5.276075e-02	ci left: 8.202282e-02	ci right 8.648415e-02	k: 5054	n:60000
DNAH2   60000 perm   31 sec   (1943 perm/sec)   p_kst 8.423333e-02   p_cons 1.413333e-02   p_joint 1.276667e-02

Joint ci ratio: 1.174765e-01	ci left: 1.473658e-02	ci right 1.658960e-02	k: 1095	n:70000
Cons ci ratio: 1.247271e-01	ci left: 1.304576e-02	ci right 1.479488e-02	k: 973	n:70000
KS ci ratio: 4.868717e-02	ci left: 8.268985e-02	ci right 8.683036e-02	k: 5932	n:70000
DNAH2   70000 perm   36 sec   (1922 perm/sec)   p_kst 8.474286e-02   p_cons 1.390000e-02   p_joint 1.564286e-02

Joint ci ratio: 1.157858e-01	ci left: 1.330654e-02	ci right 1.495398e-02	k: 1129	n:80000
Cons ci ratio: 1.165731e-01	ci left: 1.312441e-02	ci right 1.476111e-02	k: 1114	n:80000
KS ci ratio: 4.575156e-02	ci left: 8.212380e-02	ci right 8.598142e-02	k: 6723	n:80000
DNAH2   80000 perm   42 sec   (1902 perm/sec)   p_kst 8.403750e-02   p_cons 1.392500e-02   p_joint 1.411250e-02

Joint ci ratio: 1.159819e-01	ci left: 1.180592e-02	ci right 1.327020e-02	k: 1127	n:90000
Cons ci ratio: 1.110967e-01	ci left: 1.288587e-02	ci right 1.441238e-02	k: 1227	n:90000
KS ci ratio: 4.314279e-02	ci left: 8.220664e-02	ci right 8.584245e-02	k: 7561	n:90000
DNAH2   90000 perm   48 sec   (1885 perm/sec)   p_kst 8.401111e-02   p_cons 1.363333e-02   p_joint 1.252222e-02

Joint ci ratio: 1.155901e-01	ci left: 1.071237e-02	ci right 1.203620e-02	k: 1136	n:100000
Cons ci ratio: 1.057674e-01	ci left: 1.283283e-02	ci right 1.427559e-02	k: 1354	n:100000
KS ci ratio: 4.087371e-02	ci left: 8.250580e-02	ci right 8.595836e-02	k: 8422	n:100000
DNAH2   100000 perm   53 sec   (1870 perm/sec)   p_kst 8.422000e-02   p_cons 1.354000e-02   p_joint 1.136000e-02

Joint ci ratio: 1.108718e-01	ci left: 1.061300e-02	ci right 1.186751e-02	k: 1235	n:110000
Cons ci ratio: 1.004871e-01	ci left: 1.295930e-02	ci right 1.433924e-02	k: 1500	n:110000
KS ci ratio: 3.901136e-02	ci left: 8.243028e-02	ci right 8.571896e-02	k: 9247	n:110000
DNAH2   110000 perm   59 sec   (1853 perm/sec)   p_kst 8.406364e-02   p_cons 1.363636e-02   p_joint 1.122727e-02

Joint ci ratio: 1.015082e-01	ci left: 1.165152e-02	ci right 1.290555e-02	k: 1472	n:120000
Cons ci ratio: 9.679374e-02	ci left: 1.283027e-02	ci right 1.414340e-02	k: 1617	n:120000
KS ci ratio: 3.730761e-02	ci left: 8.267607e-02	ci right 8.582739e-02	k: 10109	n:120000
DNAH2   120000 perm   65 sec   (1838 perm/sec)   p_kst 8.424167e-02   p_cons 1.347500e-02   p_joint 1.226667e-02

Joint ci ratio: 8.330826e-02	ci left: 1.604803e-02	ci right 1.745057e-02	k: 2176	n:130000
Cons ci ratio: 9.232688e-02	ci left: 1.304506e-02	ci right 1.431523e-02	k: 1777	n:130000
KS ci ratio: 3.505892e-02	ci left: 8.619065e-02	ci right 8.927392e-02	k: 11404	n:130000
DNAH2   130000 perm   71 sec   (1825 perm/sec)   p_kst 8.772308e-02   p_cons 1.366923e-02   p_joint 1.673846e-02

Outputting figure to mutsig2_images.part000000000051/DNAH2.15_13624_130000_0.087723_0.013669_0.016738.png
                gene_name: DNAH2
               theta_stop: 0.092 
                    nperm: 130000 
                     p_ks: 0.088 
        ci_ks_bounds_left: 0.086 
       ci_ks_bounds_right: 0.089 
                   p_cons: 0.014 
      ci_cons_bounds_left: 0.013 
     ci_cons_bounds_right: 0.014 
                  p_joint: 0.017 
     ci_joint_bounds_left: 0.016 
    ci_joint_bounds_right: 0.017 

Current progress: 24 percent done.
DMBT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.477206e-02	ci left: 7.056371e-01	ci right 7.234378e-01	k: 7146	n:10000
Cons ci ratio: 3.156504e-02	ci left: 5.969456e-01	ci right 6.161923e-01	k: 6066	n:10000
KS ci ratio: 4.137052e-02	ci left: 4.631735e-01	ci right 4.828422e-01	k: 4730	n:10000
DMBT1   10000 perm   3 sec   (3237 perm/sec)   p_kst 4.730000e-01   p_cons 6.066000e-01   p_joint 7.146000e-01

Outputting figure to mutsig2_images.part000000000051/DMBT1.11_7454_10000_0.473_0.6066_0.7146.png
                gene_name: DMBT1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.72 

Current progress: 27 percent done.
DNAJC13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.930512e-02	ci left: 3.776368e-01	ci right 3.968289e-01	k: 3872	n:10000
Cons ci ratio: 7.891625e-02	ci left: 1.900315e-01	ci right 2.057449e-01	k: 1978	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
DNAJC13   10000 perm   3 sec   (3277 perm/sec)   p_kst 1   p_cons 1.978000e-01   p_joint 3.872000e-01

Outputting figure to mutsig2_images.part000000000051/DNAJC13.10_6952_10000_1_0.1978_0.3872.png
                gene_name: DNAJC13
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 30 percent done.
DMXL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.481229e-02	ci left: 8.684609e-01	ci right 8.815198e-01	k: 8751	n:10000
Cons ci ratio: 5.508155e-02	ci left: 3.268405e-01	ci right 3.454551e-01	k: 3361	n:10000
KS ci ratio: 2.084912e-02	ci left: 7.712435e-01	ci right 7.875934e-01	k: 7795	n:10000
DMXL1   10000 perm   3 sec   (2926 perm/sec)   p_kst 7.795000e-01   p_cons 3.361000e-01   p_joint 8.751000e-01

Outputting figure to mutsig2_images.part000000000051/DMXL1.9_9256_10000_0.7795_0.3361_0.8751.png
                gene_name: DMXL1
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 32 percent done.
DMXL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.360087e-02	ci left: 5.666442e-01	ci right 5.861113e-01	k: 5764	n:10000
Cons ci ratio: 4.637988e-02	ci left: 4.069129e-01	ci right 4.263357e-01	k: 4166	n:10000
KS ci ratio: 4.589673e-02	ci left: 4.119951e-01	ci right 4.314506e-01	k: 4217	n:10000
DMXL2   10000 perm   3 sec   (2998 perm/sec)   p_kst 4.217000e-01   p_cons 4.166000e-01   p_joint 5.764000e-01

Outputting figure to mutsig2_images.part000000000051/DMXL2.9_9286_10000_0.4217_0.4166_0.5764.png
                gene_name: DMXL2
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 35 percent done.
DNAH1
Processing conservation and coverage...
76% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.559459e-02	ci left: 8.565131e-01	ci right 8.700745e-01	k: 8634	n:10000
Cons ci ratio: 2.893970e-02	ci left: 6.377427e-01	ci right 6.565715e-01	k: 6472	n:10000
KS ci ratio: 2.195589e-02	ci left: 7.527183e-01	ci right 7.695293e-01	k: 7612	n:10000
DNAH1   10000 perm   4 sec   (2483 perm/sec)   p_kst 7.612000e-01   p_cons 6.472000e-01   p_joint 8.634000e-01

Outputting figure to mutsig2_images.part000000000051/DNAH1.7_13106_10000_0.7612_0.6472_0.8634.png
                gene_name: DNAH1
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 38 percent done.
DNAH17
Processing conservation and coverage...
72% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.801579e-01	ci left: 4.111563e-02	ci right 4.935192e-02	k: 451	n:10000
Cons ci ratio: 2.028398e-01	ci left: 3.233938e-02	ci right 3.973408e-02	k: 359	n:10000
KS ci ratio: 1.123029e-01	ci left: 1.024689e-01	ci right 1.147601e-01	k: 1085	n:10000
DNAH17   10000 perm   4 sec   (2390 perm/sec)   p_kst 1.085000e-01   p_cons 3.590000e-02   p_joint 4.510000e-02

Joint ci ratio: 8.605233e-02	ci left: 8.994073e-02	ci right 9.807774e-02	k: 1879	n:20000
Cons ci ratio: 1.391770e-01	ci left: 3.548919e-02	ci right 4.084615e-02	k: 762	n:20000
KS ci ratio: 8.045436e-02	ci left: 1.018153e-01	ci right 1.103996e-01	k: 2121	n:20000
DNAH17   20000 perm   9 sec   (2257 perm/sec)   p_kst 1.060500e-01   p_cons 3.810000e-02   p_joint 9.395000e-02

Joint ci ratio: 8.713328e-02	ci left: 6.043968e-02	ci right 6.597862e-02	k: 1895	n:30000
Cons ci ratio: 1.136126e-01	ci left: 3.599430e-02	ci right 4.036239e-02	k: 1144	n:30000
KS ci ratio: 6.596969e-02	ci left: 1.018155e-01	ci right 1.087944e-01	k: 3158	n:30000
DNAH17   30000 perm   14 sec   (2196 perm/sec)   p_kst 1.052667e-01   p_cons 3.813333e-02   p_joint 6.316667e-02

Joint ci ratio: 8.561386e-02	ci left: 4.766398e-02	ci right 5.195167e-02	k: 1991	n:40000
Cons ci ratio: 9.953848e-02	ci left: 3.546413e-02	ci right 3.920343e-02	k: 1492	n:40000
KS ci ratio: 5.703329e-02	ci left: 1.026045e-01	ci right 1.086529e-01	k: 4224	n:40000
DNAH17   40000 perm   18 sec   (2169 perm/sec)   p_kst 1.056000e-01   p_cons 3.730000e-02   p_joint 4.977500e-02

Outputting figure to mutsig2_images.part000000000051/DNAH17.7_13709_40000_0.1056_0.0373_0.049775.png
                gene_name: DNAH17
               theta_stop: 0.100 
                    nperm: 40000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.037 
      ci_cons_bounds_left: 0.035 
     ci_cons_bounds_right: 0.039 
                  p_joint: 0.050 
     ci_joint_bounds_left: 0.048 
    ci_joint_bounds_right: 0.052 

Current progress: 41 percent done.
DNAI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.650599e-02	ci left: 3.156236e-01	ci right 3.340785e-01	k: 3248	n:10000
Cons ci ratio: 2.257745e-02	ci left: 7.423010e-01	ci right 7.593527e-01	k: 7509	n:10000
KS ci ratio: 9.258663e-02	ci left: 1.449173e-01	ci right 1.590860e-01	k: 1519	n:10000
DNAI1   10000 perm   2 sec   (5207 perm/sec)   p_kst 1.519000e-01   p_cons 7.509000e-01   p_joint 3.248000e-01

Outputting figure to mutsig2_images.part000000000051/DNAI1.7_2180_10000_0.1519_0.7509_0.3248.png
                gene_name: DNAI1
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 43 percent done.
DNAJC6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.415481e-01	ci left: 1.078106e-02	ci right 1.530921e-02	k: 129	n:10000
Cons ci ratio: 3.834897e-02	ci left: 5.010505e-01	ci right 5.207431e-01	k: 5109	n:10000
KS ci ratio: 4.702584e-01	ci left: 5.284222e-03	ci right 8.612765e-03	k: 68	n:10000
DNAJC6   10000 perm   2 sec   (5171 perm/sec)   p_kst 6.800000e-03   p_cons 5.109000e-01   p_joint 1.290000e-02

Joint ci ratio: 1.820756e-01	ci left: 2.058483e-02	ci right 2.475554e-02	k: 452	n:20000
Cons ci ratio: 2.724931e-02	ci left: 5.015457e-01	ci right 5.154519e-01	k: 10170	n:20000
KS ci ratio: 3.277811e-01	ci left: 5.937561e-03	ci right 8.309133e-03	k: 141	n:20000
DNAJC6   20000 perm   4 sec   (4605 perm/sec)   p_kst 7.050000e-03   p_cons 5.085000e-01   p_joint 2.260000e-02

Joint ci ratio: 2.200541e-01	ci left: 9.314470e-03	ci right 1.164846e-02	k: 313	n:30000
Cons ci ratio: 2.225990e-02	ci left: 5.025923e-01	ci right 5.139395e-01	k: 15248	n:30000
KS ci ratio: 2.627104e-01	ci left: 6.399145e-03	ci right 8.364734e-03	k: 220	n:30000
DNAJC6   30000 perm   7 sec   (4399 perm/sec)   p_kst 7.333333e-03   p_cons 5.082667e-01   p_joint 1.043333e-02

Joint ci ratio: 1.070664e-01	ci left: 3.068636e-02	ci right 3.418195e-02	k: 1296	n:40000
Cons ci ratio: 1.924095e-02	ci left: 5.043129e-01	ci right 5.141358e-01	k: 20369	n:40000
KS ci ratio: 2.258478e-01	ci left: 6.630713e-03	ci right 8.341955e-03	k: 298	n:40000
DNAJC6   40000 perm   9 sec   (4262 perm/sec)   p_kst 7.450000e-03   p_cons 5.092250e-01   p_joint 3.240000e-02

Joint ci ratio: 1.150784e-01	ci left: 2.137335e-02	ci right 2.400247e-02	k: 1133	n:50000
Cons ci ratio: 1.717622e-02	ci left: 5.058078e-01	ci right 5.145910e-01	k: 25510	n:50000
KS ci ratio: 2.038680e-01	ci left: 6.591539e-03	ci right 8.106503e-03	k: 366	n:50000
DNAJC6   50000 perm   12 sec   (4145 perm/sec)   p_kst 7.320000e-03   p_cons 5.102000e-01   p_joint 2.266000e-02

Joint ci ratio: 1.351197e-01	ci left: 1.289789e-02	ci right 1.478290e-02	k: 829	n:60000
Cons ci ratio: 1.628710e-02	ci left: 4.871920e-01	ci right 4.952088e-01	k: 29472	n:60000
KS ci ratio: 1.868334e-01	ci left: 6.602648e-03	ci right 7.978990e-03	k: 436	n:60000
DNAJC6   60000 perm   15 sec   (4050 perm/sec)   p_kst 7.266667e-03   p_cons 4.912000e-01   p_joint 1.381667e-02

Joint ci ratio: 1.401194e-01	ci left: 1.028188e-02	ci right 1.184476e-02	k: 773	n:70000
Cons ci ratio: 1.421594e-02	ci left: 5.169484e-01	ci right 5.243642e-01	k: 36446	n:70000
KS ci ratio: 1.731169e-01	ci left: 6.641711e-03	ci right 7.913932e-03	k: 508	n:70000
DNAJC6   70000 perm   18 sec   (3968 perm/sec)   p_kst 7.257143e-03   p_cons 5.206571e-01   p_joint 1.104286e-02

Joint ci ratio: 1.364405e-01	ci left: 9.515288e-03	ci right 1.092057e-02	k: 816	n:80000
Cons ci ratio: 1.330901e-02	ci left: 5.167686e-01	ci right 5.237049e-01	k: 41619	n:80000
KS ci ratio: 1.630286e-01	ci left: 6.589827e-03	ci right 7.771336e-03	k: 573	n:80000
DNAJC6   80000 perm   21 sec   (3894 perm/sec)   p_kst 7.162500e-03   p_cons 5.202375e-01   p_joint 1.020000e-02

Joint ci ratio: 1.319499e-01	ci left: 9.069967e-03	ci right 1.036193e-02	k: 873	n:90000
Cons ci ratio: 1.254631e-02	ci left: 5.170299e-01	ci right 5.235688e-01	k: 46827	n:90000
KS ci ratio: 1.548871e-01	ci left: 6.519102e-03	ci right 7.624138e-03	k: 635	n:90000
DNAJC6   90000 perm   24 sec   (3820 perm/sec)   p_kst 7.055556e-03   p_cons 5.203000e-01   p_joint 9.700000e-03

Joint ci ratio: 1.108087e-01	ci left: 1.167466e-02	ci right 1.305384e-02	k: 1235	n:100000
Cons ci ratio: 1.188843e-02	ci left: 5.177882e-01	ci right 5.239906e-01	k: 52089	n:100000
KS ci ratio: 1.464872e-01	ci left: 6.588946e-03	ci right 7.639948e-03	k: 710	n:100000
DNAJC6   100000 perm   27 sec   (3756 perm/sec)   p_kst 7.100000e-03   p_cons 5.208900e-01   p_joint 1.235000e-02

Joint ci ratio: 9.643155e-02	ci left: 1.408581e-02	ci right 1.552176e-02	k: 1627	n:110000
Cons ci ratio: 1.133992e-02	ci left: 5.177245e-01	ci right 5.236380e-01	k: 57275	n:110000
KS ci ratio: 1.403130e-01	ci left: 6.550890e-03	ci right 7.548094e-03	k: 774	n:110000
DNAJC6   110000 perm   30 sec   (3697 perm/sec)   p_kst 7.036364e-03   p_cons 5.206818e-01   p_joint 1.479091e-02

Joint ci ratio: 8.928746e-02	ci left: 1.510200e-02	ci right 1.652154e-02	k: 1896	n:120000
Cons ci ratio: 1.084987e-02	ci left: 5.181856e-01	ci right 5.238468e-01	k: 62522	n:120000
KS ci ratio: 1.343759e-01	ci left: 6.568280e-03	ci right 7.522443e-03	k: 844	n:120000
DNAJC6   120000 perm   33 sec   (3637 perm/sec)   p_kst 7.033333e-03   p_cons 5.210167e-01   p_joint 1.580000e-02

Joint ci ratio: 7.978385e-02	ci left: 1.750289e-02	ci right 1.896486e-02	k: 2369	n:130000
Cons ci ratio: 1.043229e-02	ci left: 5.179108e-01	ci right 5.233498e-01	k: 67682	n:130000
KS ci ratio: 1.294906e-01	ci left: 6.546523e-03	ci right 7.460291e-03	k: 909	n:130000
DNAJC6   130000 perm   36 sec   (3579 perm/sec)   p_kst 6.992308e-03   p_cons 5.206308e-01   p_joint 1.822308e-02

Joint ci ratio: 8.056601e-02	ci left: 1.595818e-02	ci right 1.730480e-02	k: 2327	n:140000
Cons ci ratio: 1.005919e-02	ci left: 5.176934e-01	ci right 5.229344e-01	k: 72844	n:140000
KS ci ratio: 1.242073e-01	ci left: 6.625314e-03	ci right 7.509572e-03	k: 988	n:140000
DNAJC6   140000 perm   40 sec   (3523 perm/sec)   p_kst 7.057143e-03   p_cons 5.203143e-01   p_joint 1.662143e-02

Joint ci ratio: 8.022724e-02	ci left: 1.503774e-02	ci right 1.630109e-02	k: 2349	n:150000
Cons ci ratio: 9.721634e-03	ci left: 5.176014e-01	ci right 5.226645e-01	k: 78020	n:150000
KS ci ratio: 1.200323e-01	ci left: 6.636041e-03	ci right 7.489846e-03	k: 1058	n:150000
DNAJC6   150000 perm   43 sec   (3469 perm/sec)   p_kst 7.053333e-03   p_cons 5.201333e-01   p_joint 1.566000e-02

Joint ci ratio: 8.286430e-02	ci left: 1.322183e-02	ci right 1.437089e-02	k: 2206	n:160000
Cons ci ratio: 9.411091e-03	ci left: 5.177798e-01	ci right 5.226819e-01	k: 83237	n:160000
KS ci ratio: 1.158393e-01	ci left: 6.694421e-03	ci right 7.523590e-03	k: 1136	n:160000
DNAJC6   160000 perm   47 sec   (3418 perm/sec)   p_kst 7.100000e-03   p_cons 5.202313e-01   p_joint 1.378750e-02

Joint ci ratio: 7.464234e-02	ci left: 1.536844e-02	ci right 1.656579e-02	k: 2713	n:170000
Cons ci ratio: 9.135949e-03	ci left: 5.175336e-01	ci right 5.222893e-01	k: 88385	n:170000
KS ci ratio: 1.127129e-01	ci left: 6.666336e-03	ci right 7.468260e-03	k: 1200	n:170000
DNAJC6   170000 perm   50 sec   (3367 perm/sec)   p_kst 7.058824e-03   p_cons 5.199118e-01   p_joint 1.595882e-02

Joint ci ratio: 6.838441e-02	ci left: 1.731433e-02	ci right 1.854571e-02	k: 3226	n:180000
Cons ci ratio: 8.870464e-03	ci left: 5.180557e-01	ci right 5.226770e-01	k: 93666	n:180000
KS ci ratio: 1.090054e-01	ci left: 6.744325e-03	ci right 7.527230e-03	k: 1283	n:180000
DNAJC6   180000 perm   54 sec   (3320 perm/sec)   p_kst 7.127778e-03   p_cons 5.203667e-01   p_joint 1.792222e-02

Joint ci ratio: 6.384007e-02	ci left: 1.883634e-02	ci right 2.008365e-02	k: 3696	n:190000
Cons ci ratio: 8.633758e-03	ci left: 5.181244e-01	ci right 5.226224e-01	k: 98871	n:190000
KS ci ratio: 1.057580e-01	ci left: 6.799116e-03	ci right 7.563405e-03	k: 1363	n:190000
DNAJC6   190000 perm   58 sec   (3275 perm/sec)   p_kst 7.173684e-03   p_cons 5.203737e-01   p_joint 1.945263e-02

Joint ci ratio: 6.741379e-02	ci left: 1.606423e-02	ci right 1.718984e-02	k: 3324	n:200000
Cons ci ratio: 8.412936e-03	ci left: 5.183128e-01	ci right 5.226967e-01	k: 104101	n:200000
KS ci ratio: 1.028563e-01	ci left: 6.838993e-03	ci right 7.585397e-03	k: 1441	n:200000
DNAJC6   200000 perm   62 sec   (3229 perm/sec)   p_kst 7.205000e-03   p_cons 5.205050e-01   p_joint 1.662000e-02

Joint ci ratio: 6.788835e-02	ci left: 1.509771e-02	ci right 1.616334e-02	k: 3281	n:210000
Cons ci ratio: 8.199702e-03	ci left: 5.190036e-01	ci right 5.232815e-01	k: 109440	n:210000
KS ci ratio: 1.001479e-01	ci left: 6.879975e-03	ci right 7.609917e-03	k: 1520	n:210000
DNAJC6   210000 perm   66 sec   (3185 perm/sec)   p_kst 7.238095e-03   p_cons 5.211429e-01   p_joint 1.562381e-02

Joint ci ratio: 6.634991e-02	ci left: 1.509970e-02	ci right 1.614039e-02	k: 3435	n:220000
Cons ci ratio: 8.016686e-03	ci left: 5.187099e-01	ci right 5.228895e-01	k: 114576	n:220000
KS ci ratio: 9.785863e-02	ci left: 6.886419e-03	ci right 7.599384e-03	k: 1592	n:220000
DNAJC6   220000 perm   70 sec   (3143 perm/sec)   p_kst 7.236364e-03   p_cons 5.208000e-01   p_joint 1.561364e-02

Outputting figure to mutsig2_images.part000000000051/DNAJC6.7_2818_220000_0.0072364_0.5208_0.015614.png
                gene_name: DNAJC6
               theta_stop: 0.098 
                    nperm: 220000 
                     p_ks: 0.0072 
        ci_ks_bounds_left: 0.0069 
       ci_ks_bounds_right: 0.0076 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.016 
     ci_joint_bounds_left: 0.015 
    ci_joint_bounds_right: 0.016 

Current progress: 46 percent done.
DLX5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.038155e-02	ci left: 3.674883e-01	ci right 3.865834e-01	k: 3770	n:10000
Cons ci ratio: 2.122464e-02	ci left: 7.649647e-01	ci right 7.814758e-01	k: 7733	n:10000
KS ci ratio: 8.964901e-02	ci left: 1.532571e-01	ci right 1.677413e-01	k: 1604	n:10000
DLX5   10000 perm   2 sec   (6329 perm/sec)   p_kst 1.604000e-01   p_cons 7.733000e-01   p_joint 3.770000e-01

Outputting figure to mutsig2_images.part000000000051/DLX5.4_882_10000_0.1604_0.7733_0.377.png
                gene_name: DLX5
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 49 percent done.
DMRT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.404691e-02	ci left: 2.107297e-01	ci right 2.270344e-01	k: 2188	n:10000
Cons ci ratio: 1.038522e-01	ci left: 1.181869e-01	ci right 1.312326e-01	k: 1246	n:10000
KS ci ratio: 6.210389e-02	ci left: 2.759680e-01	ci right 2.937575e-01	k: 2848	n:10000
DMRT1   10000 perm   2 sec   (6533 perm/sec)   p_kst 2.848000e-01   p_cons 1.246000e-01   p_joint 2.188000e-01

Joint ci ratio: 5.981036e-02	ci left: 1.714856e-01	ci right 1.821085e-01	k: 3535	n:20000
Cons ci ratio: 7.233016e-02	ci left: 1.233991e-01	ci right 1.327093e-01	k: 2560	n:20000
KS ci ratio: 4.455887e-02	ci left: 2.727419e-01	ci right 2.852224e-01	k: 5579	n:20000
DMRT1   20000 perm   4 sec   (5702 perm/sec)   p_kst 2.789500e-01   p_cons 1.280000e-01   p_joint 1.767500e-01

Outputting figure to mutsig2_images.part000000000051/DMRT1.4_1142_20000_0.27895_0.128_0.17675.png
                gene_name: DMRT1
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 51 percent done.
DNAI2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.408486e-02	ci left: 5.596260e-01	ci right 5.791336e-01	k: 5694	n:10000
KS ci ratio: 2.400855e-02	ci left: 7.183550e-01	ci right 7.359125e-01	k: 7272	n:10000
DNAI2   10000 perm   2 sec   (5555 perm/sec)   p_kst 7.272000e-01   p_cons 5.694000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000051/DNAI2.4_1866_10000_0.7272_0.5694_1.png
                gene_name: DNAI2
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 54 percent done.
DNAJB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.630055e-02	ci left: 3.172115e-01	ci right 3.356897e-01	k: 3264	n:10000
Cons ci ratio: 5.031728e-02	ci left: 3.680851e-01	ci right 3.871862e-01	k: 3776	n:10000
KS ci ratio: 6.463583e-02	ci left: 2.601291e-01	ci right 2.776057e-01	k: 2688	n:10000
DNAJB1   10000 perm   2 sec   (6536 perm/sec)   p_kst 2.688000e-01   p_cons 3.776000e-01   p_joint 3.264000e-01

Outputting figure to mutsig2_images.part000000000051/DNAJB1.4_1035_10000_0.2688_0.3776_0.3264.png
                gene_name: DNAJB1
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 57 percent done.
DNAJC10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.499931e-03	ci left: 9.399353e-01	ci right 9.490036e-01	k: 9446	n:10000
KS ci ratio: 2.787044e-02	ci left: 6.548469e-01	ci right 6.734574e-01	k: 6642	n:10000
DNAJC10   10000 perm   2 sec   (5758 perm/sec)   p_kst 6.642000e-01   p_cons 9.446000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000051/DNAJC10.3_2470_10000_0.6642_0.9446_1.png
                gene_name: DNAJC10
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 59 percent done.
DNASE2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.730797e-02	ci left: 3.973494e-01	ci right 4.167048e-01	k: 4070	n:10000
Cons ci ratio: 1.888152e-02	ci left: 8.038971e-01	ci right 8.193209e-01	k: 8117	n:10000
KS ci ratio: 1.019464e-01	ci left: 1.221955e-01	ci right 1.354215e-01	k: 1287	n:10000
DNASE2B   10000 perm   2 sec   (6630 perm/sec)   p_kst 1.287000e-01   p_cons 8.117000e-01   p_joint 4.070000e-01

Joint ci ratio: 3.776169e-02	ci left: 3.434864e-01	ci right 3.567572e-01	k: 7002	n:20000
Cons ci ratio: 1.370349e-02	ci left: 7.980252e-01	ci right 8.090864e-01	k: 16072	n:20000
KS ci ratio: 7.389360e-02	ci left: 1.187734e-01	ci right 1.279364e-01	k: 2466	n:20000
DNASE2B   20000 perm   4 sec   (5697 perm/sec)   p_kst 1.233000e-01   p_cons 8.036000e-01   p_joint 3.501000e-01

Outputting figure to mutsig2_images.part000000000051/DNASE2B.3_1110_20000_0.1233_0.8036_0.3501.png
                gene_name: DNASE2B
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 62 percent done.
DMBX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.305600e-02	ci left: 8.941583e-01	ci right 9.060075e-01	k: 9002	n:10000
Cons ci ratio: 6.614789e-03	ci left: 9.689983e-01	ci right 9.755227e-01	k: 9724	n:10000
KS ci ratio: 2.952506e-02	ci left: 6.284917e-01	ci right 6.474279e-01	k: 6380	n:10000
DMBX1   10000 perm   1 sec   (7132 perm/sec)   p_kst 6.380000e-01   p_cons 9.724000e-01   p_joint 9.002000e-01

Outputting figure to mutsig2_images.part000000000051/DMBX1.2_1165_10000_0.638_0.9724_0.9002.png
                gene_name: DMBX1
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.91 

Current progress: 65 percent done.
DMGDH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.200987e-02	ci left: 5.902198e-01	ci right 6.095220e-01	k: 5999	n:10000
Cons ci ratio: 3.687240e-02	ci left: 5.206607e-01	ci right 5.403215e-01	k: 5305	n:10000
KS ci ratio: 7.759865e-02	ci left: 1.953508e-01	ci right 2.112224e-01	k: 2032	n:10000
DMGDH   10000 perm   2 sec   (5604 perm/sec)   p_kst 2.032000e-01   p_cons 5.305000e-01   p_joint 5.999000e-01

Outputting figure to mutsig2_images.part000000000051/DMGDH.2_2665_10000_0.2032_0.5305_0.5999.png
                gene_name: DMGDH
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 68 percent done.
DMKN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.651450e-02	ci left: 8.421365e-01	ci right 8.562594e-01	k: 8493	n:10000
Cons ci ratio: 4.536454e-02	ci left: 4.176764e-01	ci right 4.371659e-01	k: 4274	n:10000
KS ci ratio: 3.861839e-02	ci left: 4.975503e-01	ci right 5.172454e-01	k: 5074	n:10000
DMKN   10000 perm   2 sec   (6279 perm/sec)   p_kst 5.074000e-01   p_cons 4.274000e-01   p_joint 8.493000e-01

Outputting figure to mutsig2_images.part000000000051/DMKN.2_1812_10000_0.5074_0.4274_0.8493.png
                gene_name: DMKN
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 70 percent done.
DMP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.485289e-02	ci left: 8.678477e-01	ci right 8.809333e-01	k: 8745	n:10000
KS ci ratio: 1.852255e-02	ci left: 8.097874e-01	ci right 8.250272e-01	k: 8175	n:10000
DMP1   10000 perm   2 sec   (6536 perm/sec)   p_kst 8.175000e-01   p_cons 8.745000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000051/DMP1.2_1562_10000_0.8175_0.8745_1.png
                gene_name: DMP1
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
DMRTA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.498281e-02	ci left: 2.580513e-01	ci right 2.754848e-01	k: 2667	n:10000
Cons ci ratio: 4.639896e-02	ci left: 4.067137e-01	ci right 4.261351e-01	k: 4164	n:10000
KS ci ratio: 9.943597e-02	ci left: 1.277721e-01	ci right 1.412416e-01	k: 1344	n:10000
DMRTA1   10000 perm   2 sec   (6545 perm/sec)   p_kst 1.344000e-01   p_cons 4.164000e-01   p_joint 2.667000e-01

Outputting figure to mutsig2_images.part000000000051/DMRTA1.2_1523_10000_0.1344_0.4164_0.2667.png
                gene_name: DMRTA1
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 76 percent done.
DMRTC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.899868e-02	ci left: 4.926508e-01	ci right 5.123478e-01	k: 5025	n:10000
Cons ci ratio: 2.526781e-01	ci left: 2.052656e-02	ci right 2.655540e-02	k: 234	n:10000
KS ci ratio: 7.778311e-03	ci left: 9.582750e-01	ci right 9.658527e-01	k: 9622	n:10000
DMRTC2   10000 perm   1 sec   (7103 perm/sec)   p_kst 9.622000e-01   p_cons 2.340000e-02   p_joint 5.025000e-01

Joint ci ratio: 4.781158e-03	ci left: 9.687356e-01	ci right 9.734261e-01	k: 19423	n:20000
Cons ci ratio: 1.750839e-01	ci left: 2.230608e-02	ci right 2.663369e-02	k: 488	n:20000
KS ci ratio: 5.530896e-03	ci left: 9.589989e-01	ci right 9.643658e-01	k: 19235	n:20000
DMRTC2   20000 perm   3 sec   (6209 perm/sec)   p_kst 9.617500e-01   p_cons 2.440000e-02   p_joint 9.711500e-01

Joint ci ratio: 4.558892e-03	ci left: 9.587818e-01	ci right 9.631950e-01	k: 28831	n:30000
Cons ci ratio: 1.465282e-01	ci left: 2.159043e-02	ci right 2.503607e-02	k: 698	n:30000
KS ci ratio: 4.483352e-03	ci left: 9.600485e-01	ci right 9.643947e-01	k: 28868	n:30000
DMRTC2   30000 perm   5 sec   (5855 perm/sec)   p_kst 9.622667e-01   p_cons 2.326667e-02   p_joint 9.610333e-01

Joint ci ratio: 4.213350e-03	ci left: 9.537910e-01	ci right 9.578425e-01	k: 38234	n:40000
Cons ci ratio: 1.270373e-01	ci left: 2.177117e-02	ci right 2.474860e-02	k: 929	n:40000
KS ci ratio: 3.936333e-03	ci left: 9.593124e-01	ci right 9.631203e-01	k: 38450	n:40000
DMRTC2   40000 perm   7 sec   (5614 perm/sec)   p_kst 9.612500e-01   p_cons 2.322500e-02   p_joint 9.558500e-01

Joint ci ratio: 4.940314e-03	ci left: 9.241170e-01	ci right 9.287134e-01	k: 46322	n:50000
Cons ci ratio: 1.131534e-01	ci left: 2.211213e-02	ci right 2.478359e-02	k: 1171	n:50000
KS ci ratio: 3.497362e-03	ci left: 9.600216e-01	ci right 9.634045e-01	k: 48087	n:50000
DMRTC2   50000 perm   9 sec   (5444 perm/sec)   p_kst 9.617400e-01   p_cons 2.342000e-02   p_joint 9.264400e-01

Joint ci ratio: 2.766368e-03	ci left: 9.696260e-01	ci right 9.723282e-01	k: 58260	n:60000
Cons ci ratio: 1.027128e-01	ci left: 2.248136e-02	ci right 2.493167e-02	k: 1421	n:60000
KS ci ratio: 3.213711e-03	ci left: 9.596749e-01	ci right 9.627803e-01	k: 57675	n:60000
DMRTC2   60000 perm   11 sec   (5284 perm/sec)   p_kst 9.612500e-01   p_cons 2.368333e-02   p_joint 9.710000e-01

Joint ci ratio: 2.969819e-03	ci left: 9.599320e-01	ci right 9.628010e-01	k: 67297	n:70000
Cons ci ratio: 9.480141e-02	ci left: 2.271137e-02	ci right 2.498547e-02	k: 1668	n:70000
KS ci ratio: 2.974956e-03	ci left: 9.598012e-01	ci right 9.626747e-01	k: 67288	n:70000
DMRTC2   70000 perm   14 sec   (5150 perm/sec)   p_kst 9.612571e-01   p_cons 2.382857e-02   p_joint 9.613857e-01

Outputting figure to mutsig2_images.part000000000051/DMRTC2.2_1136_70000_0.96126_0.023829_0.96139.png
                gene_name: DMRTC2
               theta_stop: 0.095 
                    nperm: 70000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.024 
      ci_cons_bounds_left: 0.023 
     ci_cons_bounds_right: 0.025 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.96 

Current progress: 78 percent done.
DMTF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.692647e-03	ci left: 9.892795e-01	ci right 9.930260e-01	k: 9913	n:10000
Cons ci ratio: 2.181702e-02	ci left: 7.550454e-01	ci right 7.718009e-01	k: 7635	n:10000
KS ci ratio: 8.318649e-02	ci left: 1.740876e-01	ci right 1.892983e-01	k: 1816	n:10000
DMTF1   10000 perm   2 sec   (6005 perm/sec)   p_kst 1.816000e-01   p_cons 7.635000e-01   p_joint 9.913000e-01

Outputting figure to mutsig2_images.part000000000051/DMTF1.2_2347_10000_0.1816_0.7635_0.9913.png
                gene_name: DMTF1
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 81 percent done.
DNAJB13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.702727e-02	ci left: 8.339892e-01	ci right 8.484115e-01	k: 8413	n:10000
KS ci ratio: 9.508989e-03	ci left: 9.398315e-01	ci right 9.489074e-01	k: 9445	n:10000
DNAJB13   10000 perm   1 sec   (6965 perm/sec)   p_kst 9.445000e-01   p_cons 8.413000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000051/DNAJB13.2_983_10000_0.9445_0.8413_1.png
                gene_name: DNAJB13
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
DNAJB5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.509683e-02	ci left: 4.205673e-01	ci right 4.400733e-01	k: 4303	n:10000
Cons ci ratio: 8.933874e-03	ci left: 9.462737e-01	ci right 9.548614e-01	k: 9507	n:10000
KS ci ratio: 7.285505e-02	ci left: 2.162545e-01	ci right 2.327063e-01	k: 2244	n:10000
DNAJB5   10000 perm   1 sec   (6879 perm/sec)   p_kst 2.244000e-01   p_cons 9.507000e-01   p_joint 4.303000e-01

Outputting figure to mutsig2_images.part000000000051/DNAJB5.2_1279_10000_0.2244_0.9507_0.4303.png
                gene_name: DNAJB5
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 86 percent done.
DNAJB9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.588410e-02	ci left: 8.520244e-01	ci right 8.657658e-01	k: 8590	n:10000
KS ci ratio: 6.820712e-03	ci left: 9.672044e-01	ci right 9.739177e-01	k: 9707	n:10000
DNAJB9   10000 perm   1 sec   (7093 perm/sec)   p_kst 9.707000e-01   p_cons 8.590000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000051/DNAJB9.2_680_10000_0.9707_0.859_1.png
                gene_name: DNAJB9
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
DNAJC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.479914e-02	ci left: 5.494030e-01	ci right 5.689625e-01	k: 5592	n:10000
Cons ci ratio: 1.635851e-01	ci left: 4.984277e-02	ci right 5.881908e-02	k: 542	n:10000
KS ci ratio: 2.824610e-02	ci left: 6.488086e-01	ci right 6.674992e-01	k: 6582	n:10000
DNAJC1   10000 perm   1 sec   (6682 perm/sec)   p_kst 6.582000e-01   p_cons 5.420000e-02   p_joint 5.592000e-01

Joint ci ratio: 6.641265e-02	ci left: 1.434009e-01	ci right 1.533016e-01	k: 2966	n:20000
Cons ci ratio: 1.667107e-01	ci left: 2.465375e-02	ci right 2.918520e-02	k: 537	n:20000
KS ci ratio: 1.988068e-02	ci left: 6.536883e-01	ci right 6.668651e-01	k: 13206	n:20000
DNAJC1   20000 perm   3 sec   (5810 perm/sec)   p_kst 6.603000e-01   p_cons 2.685000e-02   p_joint 1.483000e-01

Joint ci ratio: 2.038670e-02	ci left: 5.463846e-01	ci right 5.576719e-01	k: 16561	n:30000
Cons ci ratio: 1.348374e-01	ci left: 2.554970e-02	ci right 2.927591e-02	k: 821	n:30000
KS ci ratio: 1.633535e-02	ci left: 6.520649e-01	ci right 6.628379e-01	k: 19724	n:30000
DNAJC1   30000 perm   5 sec   (5478 perm/sec)   p_kst 6.574667e-01   p_cons 2.736667e-02   p_joint 5.520333e-01

Joint ci ratio: 1.820803e-02	ci left: 5.318483e-01	ci right 5.416463e-01	k: 21470	n:40000
Cons ci ratio: 1.171031e-01	ci left: 2.565209e-02	ci right 2.886704e-02	k: 1089	n:40000
KS ci ratio: 1.407371e-02	ci left: 6.551331e-01	ci right 6.644437e-01	k: 26392	n:40000
DNAJC1   40000 perm   8 sec   (5263 perm/sec)   p_kst 6.598000e-01   p_cons 2.722500e-02   p_joint 5.367500e-01

Joint ci ratio: 1.628947e-02	ci left: 5.322571e-01	ci right 5.410186e-01	k: 26832	n:50000
Cons ci ratio: 1.040167e-01	ci left: 2.618152e-02	ci right 2.907367e-02	k: 1380	n:50000
KS ci ratio: 1.256385e-02	ci left: 6.564906e-01	ci right 6.648108e-01	k: 33033	n:50000
DNAJC1   50000 perm   10 sec   (5107 perm/sec)   p_kst 6.606600e-01   p_cons 2.760000e-02   p_joint 5.366400e-01

Joint ci ratio: 1.626539e-02	ci left: 4.878586e-01	ci right 4.958755e-01	k: 29512	n:60000
Cons ci ratio: 9.519647e-02	ci left: 2.617347e-02	ci right 2.880584e-02	k: 1648	n:60000
KS ci ratio: 1.143878e-02	ci left: 6.580486e-01	ci right 6.656358e-01	k: 39711	n:60000
DNAJC1   60000 perm   12 sec   (4973 perm/sec)   p_kst 6.618500e-01   p_cons 2.746667e-02   p_joint 4.918667e-01

Outputting figure to mutsig2_images.part000000000051/DNAJC1.2_1713_60000_0.66185_0.027467_0.49187.png
                gene_name: DNAJC1
               theta_stop: 0.095 
                    nperm: 60000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.027 
      ci_cons_bounds_left: 0.026 
     ci_cons_bounds_right: 0.029 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.50 

Current progress: 92 percent done.
DNAJC14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.425176e-02	ci left: 4.298407e-01	ci right 4.493945e-01	k: 4396	n:10000
Cons ci ratio: 4.005790e-02	ci left: 4.792569e-01	ci right 4.989495e-01	k: 4891	n:10000
KS ci ratio: 2.669889e-01	ci left: 1.827990e-02	ci right 2.400381e-02	k: 210	n:10000
DNAJC14   10000 perm   2 sec   (6129 perm/sec)   p_kst 2.100000e-02   p_cons 4.891000e-01   p_joint 4.396000e-01

Joint ci ratio: 2.626090e-02	ci left: 5.200021e-01	ci right 5.338901e-01	k: 10539	n:20000
Cons ci ratio: 2.961908e-02	ci left: 4.599160e-01	ci right 4.737937e-01	k: 9337	n:20000
KS ci ratio: 1.991674e-01	ci left: 1.710552e-02	ci right 2.093613e-02	k: 379	n:20000
DNAJC14   20000 perm   4 sec   (5415 perm/sec)   p_kst 1.895000e-02   p_cons 4.668500e-01   p_joint 5.269500e-01

Joint ci ratio: 2.350319e-02	ci left: 4.754315e-01	ci right 4.867722e-01	k: 14433	n:30000
Cons ci ratio: 2.420317e-02	ci left: 4.608083e-01	ci right 4.721315e-01	k: 13994	n:30000
KS ci ratio: 1.645439e-01	ci left: 1.703726e-02	ci right 2.012364e-02	k: 556	n:30000
DNAJC14   30000 perm   6 sec   (5117 perm/sec)   p_kst 1.853333e-02   p_cons 4.664667e-01   p_joint 4.811000e-01

Joint ci ratio: 3.758235e-02	ci left: 2.097906e-01	ci right 2.178510e-01	k: 8552	n:40000
Cons ci ratio: 2.090479e-02	ci left: 4.629002e-01	ci right 4.727044e-01	k: 18712	n:40000
KS ci ratio: 1.434540e-01	ci left: 1.700905e-02	ci right 1.966153e-02	k: 732	n:40000
DNAJC14   40000 perm   8 sec   (4924 perm/sec)   p_kst 1.830000e-02   p_cons 4.678000e-01   p_joint 2.138000e-01

Joint ci ratio: 1.974141e-02	ci left: 4.365217e-01	ci right 4.452452e-01	k: 22044	n:50000
Cons ci ratio: 1.870322e-02	ci left: 4.632785e-01	ci right 4.720452e-01	k: 23383	n:50000
KS ci ratio: 1.283273e-01	ci left: 1.714319e-02	ci right 1.951320e-02	k: 915	n:50000
DNAJC14   50000 perm   10 sec   (4786 perm/sec)   p_kst 1.830000e-02   p_cons 4.676600e-01   p_joint 4.408800e-01

Joint ci ratio: 3.527548e-02	ci left: 1.676640e-01	ci right 1.737012e-01	k: 10240	n:60000
Cons ci ratio: 1.628818e-02	ci left: 4.871587e-01	ci right 4.951755e-01	k: 29470	n:60000
KS ci ratio: 1.179248e-01	ci left: 1.701595e-02	ci right 1.916436e-02	k: 1084	n:60000
DNAJC14   60000 perm   13 sec   (4670 perm/sec)   p_kst 1.806667e-02   p_cons 4.911667e-01   p_joint 1.706667e-01

Joint ci ratio: 2.163577e-02	ci left: 3.157755e-01	ci right 3.226966e-01	k: 22346	n:70000
Cons ci ratio: 1.505659e-02	ci left: 4.882326e-01	ci right 4.956538e-01	k: 34436	n:70000
KS ci ratio: 1.085170e-01	ci left: 1.730604e-02	ci right 1.930560e-02	k: 1280	n:70000
DNAJC14   70000 perm   15 sec   (4562 perm/sec)   p_kst 1.828571e-02   p_cons 4.919429e-01   p_joint 3.192286e-01

Joint ci ratio: 2.924941e-02	ci left: 1.806614e-01	ci right 1.860365e-01	k: 14667	n:80000
Cons ci ratio: 1.410513e-02	ci left: 4.877299e-01	ci right 4.946707e-01	k: 39296	n:80000
KS ci ratio: 1.009828e-01	ci left: 1.755310e-02	ci right 1.943205e-02	k: 1478	n:80000
DNAJC14   80000 perm   18 sec   (4463 perm/sec)   p_kst 1.847500e-02   p_cons 4.912000e-01   p_joint 1.833375e-01

Joint ci ratio: 2.764588e-02	ci left: 1.800696e-01	ci right 1.851286e-01	k: 16433	n:90000
Cons ci ratio: 1.327839e-02	ci left: 4.886841e-01	ci right 4.952275e-01	k: 44276	n:90000
KS ci ratio: 9.494263e-02	ci left: 1.770560e-02	ci right 1.948118e-02	k: 1672	n:90000
DNAJC14   90000 perm   21 sec   (4372 perm/sec)   p_kst 1.857778e-02   p_cons 4.919556e-01   p_joint 1.825889e-01

Outputting figure to mutsig2_images.part000000000051/DNAJC14.2_2133_90000_0.018578_0.49196_0.18259.png
                gene_name: DNAJC14
               theta_stop: 0.095 
                    nperm: 90000 
                     p_ks: 0.019 
        ci_ks_bounds_left: 0.018 
       ci_ks_bounds_right: 0.019 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 95 percent done.
DNAJC5G
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.158686e-02	ci left: 4.605772e-01	ci right 4.802401e-01	k: 4704	n:10000
Cons ci ratio: 5.426490e-02	ci left: 3.334940e-01	ci right 3.521976e-01	k: 3428	n:10000
KS ci ratio: 2.608933e-02	ci left: 6.838544e-01	ci right 7.020331e-01	k: 6930	n:10000
DNAJC5G   10000 perm   1 sec   (7630 perm/sec)   p_kst 6.930000e-01   p_cons 3.428000e-01   p_joint 4.704000e-01

Outputting figure to mutsig2_images.part000000000051/DNAJC5G.2_586_10000_0.693_0.3428_0.4704.png
                gene_name: DNAJC5G
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 97 percent done.
DNASE1L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.683541e-02	ci left: 5.211612e-01	ci right 5.408207e-01	k: 5310	n:10000
KS ci ratio: 1.591030e-02	ci left: 8.516164e-01	ci right 8.653740e-01	k: 8586	n:10000
DNASE1L1   10000 perm   1 sec   (6978 perm/sec)   p_kst 8.586000e-01   p_cons 5.310000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000051/DNASE1L1.2_937_10000_0.8586_0.531_1.png
                gene_name: DNASE1L1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000051
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 51 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1648>
Subject: Job 8004023: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1648>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000052> was used as the working directory.
Started at Sun Nov 11 15:05:21 2012
Results reported at Sun Nov 11 15:18:29 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000052.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000052.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 52  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000052.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    836.59 sec.
    Max Memory :      4727 MB
    Max Swap   :      7129 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
52
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 52
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 52: processing genes 4615 - 4704
Calculating significance of each gene.
Using projection method.
4615	DND1	2.534292e-01
4616	DNER	2.334395e-01
4617	DNHD1	9.992909e-01
4618	DNLZ	1
4619	DNM1	8.234412e-01
4620	DNM1L	8.599943e-01
4621	DNM2	9.391424e-01
4622	DNM3	2.556732e-02
4623	DNMBP	9.599445e-01
4624	DNMT1	8.762929e-01
4625	DNMT3A	9.437019e-01
4626	DNMT3B	6.100860e-01
4627	DNMT3L	1.550631e-01
4628	DNPEP	1
4629	DNTT	5.226392e-01
4630	DNTTIP1	6.811319e-01
4631	DNTTIP2	9.100965e-01
4632	DOC2A	1
4633	DOCK1	9.942428e-01
4634	DOCK10	7.683846e-02
4635	DOCK11	1.227703e-01
4636	DOCK2	1
4637	DOCK3	9.905456e-01
4638	DOCK4	7.756235e-01
4639	DOCK5	4.464219e-01
4640	DOCK6	9.926070e-01
4641	DOCK7	9.993396e-01
4642	DOCK8	9.995743e-01
4643	DOCK9	9.814495e-01
4644	DOHH	1
4645	DOK1	1
4646	DOK2	2.915353e-01
4647	DOK3	1
4648	DOK4	1
4649	DOK5	5.295841e-01
4650	DOK6	3.526481e-01
4651	DOK7	1
4652	DOLK	1
4653	DOLPP1	1
4654	DOM3Z	1
4655	DONSON	7.475522e-01
4656	DOPEY1	8.988911e-01
4657	DOPEY2	1
4658	DOT1L	9.507007e-01
4659	DPAGT1	1
4660	DPCD	4.477653e-01
4661	DPEP1	2.979729e-01
4662	DPEP2	2.194503e-01
4663	DPEP3	7.790004e-01
4664	DPF1	4.788910e-01
4665	DPF2	1
4666	DPF3	2.379899e-02
4667	DPH1	6.623384e-01
4668	DPH2	1.480348e-01
4669	DPH3	1
4670	DPH3B	1
4671	DPH5	3.697640e-01
4672	DPM1	6.483801e-01
4673	DPM2	1
4674	DPM3	1
4675	DPP10	7.088800e-01
4676	DPP3	1
4677	DPP4	4.481527e-01
4678	DPP6	2.719974e-01
4679	DPP7	1
4680	DPP8	1.319322e-01
4681	DPP9	3.224939e-01
4682	DPPA2	6.404171e-02
4683	DPPA3	1
4684	DPPA4	8.141504e-09
4685	DPPA5	2.926241e-01
4686	DPRX	1.939613e-01
4687	DPT	1
4688	DPY19L1	1.363205e-01
4689	DPY19L2	8.930536e-01
4690	DPY19L3	1
4691	DPY19L4	6.286417e-01
4692	DPY30	1
4693	DPYD	9.757854e-01
4694	DPYS	1.187375e-02
4695	DPYSL2	8.114122e-01
4696	DPYSL3	4.775389e-01
4697	DPYSL4	1
4698	DPYSL5	1.277616e-02
4699	DQX1	9.214631e-01
4700	DR1	1
4701	DRAM1	3.405807e-01
4702	DRAM2	1
4703	DRAP1	1
4704	DRD1	8.583275e-01
Done

Running MutSig 2:
Scatter job 52: processing genes 4615 - 4704
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
DPP10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.973631e-02	ci left: 2.919197e-01	ci right 3.099964e-01	k: 3009	n:10000
Cons ci ratio: 1.335166e-02	ci left: 8.899537e-01	ci right 9.020145e-01	k: 8961	n:10000
KS ci ratio: 8.260373e-02	ci left: 1.761532e-01	ci right 1.914315e-01	k: 1837	n:10000
DPP10   10000 perm   2 sec   (4379 perm/sec)   p_kst 1.837000e-01   p_cons 8.961000e-01   p_joint 3.009000e-01

Outputting figure to mutsig2_images.part000000000052/DPP10.18_2666_10000_0.1837_0.8961_0.3009.png
                gene_name: DPP10
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 2 percent done.
DOCK10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.357589e-01	ci left: 2.372311e-02	ci right 3.015646e-02	k: 268	n:10000
Cons ci ratio: 6.346671e-01	ci left: 2.606439e-03	ci right 5.096391e-03	k: 37	n:10000
KS ci ratio: 3.746868e-02	ci left: 5.126548e-01	ci right 5.323321e-01	k: 5225	n:10000
DOCK10   10000 perm   3 sec   (3876 perm/sec)   p_kst 5.225000e-01   p_cons 3.700000e-03   p_joint 2.680000e-02

Joint ci ratio: 1.536935e-01	ci left: 2.907449e-02	ci right 3.396297e-02	k: 629	n:20000
Cons ci ratio: 4.548356e-01	ci left: 2.862076e-03	ci right 4.587170e-03	k: 73	n:20000
KS ci ratio: 2.675221e-02	ci left: 5.107477e-01	ci right 5.246472e-01	k: 10354	n:20000
DOCK10   20000 perm   6 sec   (3552 perm/sec)   p_kst 5.177000e-01   p_cons 3.650000e-03   p_joint 3.145000e-02

Joint ci ratio: 1.807637e-01	ci left: 1.403701e-02	ci right 1.685797e-02	k: 462	n:30000
Cons ci ratio: 3.747790e-01	ci left: 2.954057e-03	ci right 4.344801e-03	k: 108	n:30000
KS ci ratio: 2.190200e-02	ci left: 5.106937e-01	ci right 5.220364e-01	k: 15491	n:30000
DOCK10   30000 perm   9 sec   (3356 perm/sec)   p_kst 5.163667e-01   p_cons 3.600000e-03   p_joint 1.540000e-02

Joint ci ratio: 1.693020e-01	ci left: 1.210449e-02	ci right 1.436699e-02	k: 528	n:40000
Cons ci ratio: 3.249437e-01	ci left: 3.036855e-03	ci right 4.236984e-03	k: 144	n:40000
KS ci ratio: 1.892018e-02	ci left: 5.127145e-01	ci right 5.225329e-01	k: 20705	n:40000
DOCK10   40000 perm   13 sec   (3184 perm/sec)   p_kst 5.176250e-01   p_cons 3.600000e-03   p_joint 1.320000e-02

Joint ci ratio: 1.079817e-01	ci left: 2.429164e-02	ci right 2.708379e-02	k: 1283	n:50000
Cons ci ratio: 2.900375e-01	ci left: 3.112579e-03	ci right 4.186319e-03	k: 181	n:50000
KS ci ratio: 1.696576e-02	ci left: 5.119689e-01	ci right 5.207492e-01	k: 25818	n:50000
DOCK10   50000 perm   16 sec   (3156 perm/sec)   p_kst 5.163600e-01   p_cons 3.620000e-03   p_joint 2.566000e-02

Joint ci ratio: 1.677711e-01	ci left: 8.259823e-03	ci right 9.788235e-03	k: 540	n:60000
Cons ci ratio: 2.950450e-01	ci left: 2.501031e-03	ci right 3.381473e-03	k: 175	n:60000
KS ci ratio: 1.553192e-02	ci left: 5.109254e-01	ci right 5.189398e-01	k: 30896	n:60000
DOCK10   60000 perm   19 sec   (3119 perm/sec)   p_kst 5.149333e-01   p_cons 2.916667e-03   p_joint 9.000000e-03

Joint ci ratio: 1.373642e-01	ci left: 1.070952e-02	ci right 1.230279e-02	k: 804	n:70000
Cons ci ratio: 2.740527e-01	ci left: 2.515234e-03	ci right 3.326841e-03	k: 203	n:70000
KS ci ratio: 1.439476e-02	ci left: 5.107042e-01	ci right 5.181232e-01	k: 36009	n:70000
DOCK10   70000 perm   23 sec   (3089 perm/sec)   p_kst 5.144143e-01   p_cons 2.900000e-03   p_joint 1.148571e-02

Joint ci ratio: 1.183067e-01	ci left: 1.273601e-02	ci right 1.434955e-02	k: 1082	n:80000
Cons ci ratio: 2.547920e-01	ci left: 2.574357e-03	ci right 3.337396e-03	k: 235	n:80000
KS ci ratio: 1.347830e-02	ci left: 5.104549e-01	ci right 5.173941e-01	k: 41114	n:80000
DOCK10   80000 perm   26 sec   (3058 perm/sec)   p_kst 5.139250e-01   p_cons 2.937500e-03   p_joint 1.352500e-02

Joint ci ratio: 1.006054e-01	ci left: 1.575365e-02	ci right 1.743327e-02	k: 1492	n:90000
Cons ci ratio: 2.377630e-01	ci left: 2.653245e-03	ci right 3.379375e-03	k: 270	n:90000
KS ci ratio: 1.269005e-02	ci left: 5.113399e-01	ci right 5.178814e-01	k: 46315	n:90000
DOCK10   90000 perm   30 sec   (3028 perm/sec)   p_kst 5.146111e-01   p_cons 3.000000e-03   p_joint 1.657778e-02

Joint ci ratio: 9.331706e-02	ci left: 1.653020e-02	ci right 1.815796e-02	k: 1733	n:100000
Cons ci ratio: 2.230174e-01	ci left: 2.736597e-03	ci right 3.432720e-03	k: 307	n:100000
KS ci ratio: 1.201216e-02	ci left: 5.126171e-01	ci right 5.188219e-01	k: 51572	n:100000
DOCK10   100000 perm   33 sec   (2996 perm/sec)   p_kst 5.157200e-01   p_cons 3.070000e-03   p_joint 1.733000e-02

Joint ci ratio: 9.036811e-02	ci left: 1.605760e-02	ci right 1.758621e-02	k: 1849	n:110000
Cons ci ratio: 2.141660e-01	ci left: 2.711239e-03	ci right 3.369941e-03	k: 333	n:110000
KS ci ratio: 1.146425e-02	ci left: 5.122781e-01	ci right 5.181939e-01	k: 56676	n:110000
DOCK10   110000 perm   37 sec   (2967 perm/sec)   p_kst 5.152364e-01   p_cons 3.027273e-03   p_joint 1.680909e-02

Joint ci ratio: 8.501619e-02	ci left: 1.666770e-02	ci right 1.815575e-02	k: 2088	n:120000
Cons ci ratio: 2.065791e-01	ci left: 2.682658e-03	ci right 3.308410e-03	k: 358	n:120000
KS ci ratio: 1.098158e-02	ci left: 5.121595e-01	ci right 5.178231e-01	k: 61799	n:120000
DOCK10   120000 perm   41 sec   (2937 perm/sec)   p_kst 5.149917e-01   p_cons 2.983333e-03   p_joint 1.740000e-02

Joint ci ratio: 8.549101e-02	ci left: 1.523452e-02	ci right 1.660258e-02	k: 2068	n:130000
Cons ci ratio: 1.984535e-01	ci left: 2.695372e-03	ci right 3.296368e-03	k: 388	n:130000
KS ci ratio: 1.055303e-02	ci left: 5.121637e-01	ci right 5.176049e-01	k: 66935	n:130000
DOCK10   130000 perm   45 sec   (2907 perm/sec)   p_kst 5.148846e-01   p_cons 2.984615e-03   p_joint 1.590769e-02

Joint ci ratio: 8.438861e-02	ci left: 1.453762e-02	ci right 1.582543e-02	k: 2124	n:140000
Cons ci ratio: 1.919074e-01	ci left: 2.686278e-03	ci right 3.263184e-03	k: 415	n:140000
KS ci ratio: 1.015301e-02	ci left: 5.130569e-01	ci right 5.182996e-01	k: 72195	n:140000
DOCK10   140000 perm   49 sec   (2876 perm/sec)   p_kst 5.156786e-01   p_cons 2.964286e-03   p_joint 1.517143e-02

Joint ci ratio: 8.427121e-02	ci left: 1.362038e-02	ci right 1.482517e-02	k: 2132	n:150000
Cons ci ratio: 1.851326e-01	ci left: 2.704111e-03	ci right 3.262042e-03	k: 446	n:150000
KS ci ratio: 9.810160e-03	ci left: 5.130740e-01	ci right 5.181387e-01	k: 77341	n:150000
DOCK10   150000 perm   53 sec   (2846 perm/sec)   p_kst 5.156067e-01   p_cons 2.973333e-03   p_joint 1.421333e-02

Joint ci ratio: 8.512181e-02	ci left: 1.252410e-02	ci right 1.364365e-02	k: 2092	n:160000
Cons ci ratio: 1.803575e-01	ci left: 2.678239e-03	ci right 3.215023e-03	k: 470	n:160000
KS ci ratio: 9.495927e-03	ci left: 5.132979e-01	ci right 5.182016e-01	k: 82520	n:160000
DOCK10   160000 perm   57 sec   (2817 perm/sec)   p_kst 5.157500e-01   p_cons 2.937500e-03   p_joint 1.307500e-02

Joint ci ratio: 7.281002e-02	ci left: 1.615393e-02	ci right 1.738028e-02	k: 2849	n:170000
Cons ci ratio: 1.748739e-01	ci left: 2.689323e-03	ci right 3.210210e-03	k: 500	n:170000
KS ci ratio: 9.217236e-03	ci left: 5.131094e-01	ci right 5.178666e-01	k: 87633	n:170000
DOCK10   170000 perm   61 sec   (2787 perm/sec)   p_kst 5.154882e-01   p_cons 2.941176e-03   p_joint 1.675882e-02

Joint ci ratio: 6.664928e-02	ci left: 1.822673e-02	ci right 1.948884e-02	k: 3393	n:180000
Cons ci ratio: 1.705073e-01	ci left: 2.678116e-03	ci right 3.182548e-03	k: 526	n:180000
KS ci ratio: 8.960226e-03	ci left: 5.130271e-01	ci right 5.176502e-01	k: 92761	n:180000
DOCK10   180000 perm   65 sec   (2760 perm/sec)   p_kst 5.153389e-01   p_cons 2.922222e-03   p_joint 1.885000e-02

Joint ci ratio: 6.433881e-02	ci left: 1.854623e-02	ci right 1.978429e-02	k: 3640	n:190000
Cons ci ratio: 1.655538e-01	ci left: 2.698505e-03	ci right 3.190539e-03	k: 558	n:190000
KS ci ratio: 8.722478e-03	ci left: 5.130184e-01	ci right 5.175180e-01	k: 97901	n:190000
DOCK10   190000 perm   70 sec   (2731 perm/sec)   p_kst 5.152684e-01   p_cons 2.936842e-03   p_joint 1.915789e-02

Joint ci ratio: 7.132029e-02	ci left: 1.434901e-02	ci right 1.541512e-02	k: 2975	n:200000
Cons ci ratio: 1.600605e-01	ci left: 2.750642e-03	ci right 3.233942e-03	k: 597	n:200000
KS ci ratio: 8.540312e-03	ci left: 5.108068e-01	ci right 5.151929e-01	k: 102600	n:200000
DOCK10   200000 perm   74 sec   (2704 perm/sec)   p_kst 5.130000e-01   p_cons 2.985000e-03   p_joint 1.487500e-02

Joint ci ratio: 6.750284e-02	ci left: 1.527096e-02	ci right 1.634246e-02	k: 3318	n:210000
Cons ci ratio: 1.554475e-01	ci left: 2.784325e-03	ci right 3.258130e-03	k: 633	n:210000
KS ci ratio: 8.109950e-03	ci left: 5.244951e-01	ci right 5.287708e-01	k: 110593	n:210000
DOCK10   210000 perm   78 sec   (2677 perm/sec)   p_kst 5.266333e-01   p_cons 3.014286e-03   p_joint 1.580000e-02

Joint ci ratio: 6.584556e-02	ci left: 1.533222e-02	ci right 1.638059e-02	k: 3487	n:220000
Cons ci ratio: 1.516665e-01	ci left: 2.797632e-03	ci right 3.261070e-03	k: 665	n:220000
KS ci ratio: 7.927057e-03	ci left: 5.243201e-01	ci right 5.284974e-01	k: 115810	n:220000
DOCK10   220000 perm   83 sec   (2651 perm/sec)   p_kst 5.264091e-01   p_cons 3.022727e-03   p_joint 1.585000e-02

Joint ci ratio: 7.007815e-02	ci left: 1.295115e-02	ci right 1.389595e-02	k: 3086	n:230000
Cons ci ratio: 1.491159e-01	ci left: 2.772230e-03	ci right 3.223048e-03	k: 688	n:230000
KS ci ratio: 7.750795e-03	ci left: 5.244961e-01	ci right 5.285815e-01	k: 121104	n:230000
DOCK10   230000 perm   88 sec   (2625 perm/sec)   p_kst 5.265391e-01   p_cons 2.991304e-03   p_joint 1.341739e-02

Joint ci ratio: 6.929515e-02	ci left: 1.270214e-02	ci right 1.361800e-02	k: 3157	n:240000
Cons ci ratio: 1.456674e-01	ci left: 2.789151e-03	ci right 3.231320e-03	k: 721	n:240000
KS ci ratio: 7.584839e-03	ci left: 5.247209e-01	ci right 5.287201e-01	k: 126413	n:240000
DOCK10   240000 perm   92 sec   (2601 perm/sec)   p_kst 5.267208e-01   p_cons 3.004167e-03   p_joint 1.315417e-02

Joint ci ratio: 6.417721e-02	ci left: 1.423187e-02	ci right 1.517943e-02	k: 3675	n:250000
Cons ci ratio: 1.430187e-01	ci left: 2.781684e-03	ci right 3.213966e-03	k: 748	n:250000
KS ci ratio: 7.434292e-03	ci left: 5.245805e-01	ci right 5.284989e-01	k: 131635	n:250000
DOCK10   250000 perm   97 sec   (2576 perm/sec)   p_kst 5.265400e-01   p_cons 2.992000e-03   p_joint 1.470000e-02

Joint ci ratio: 6.626493e-02	ci left: 1.284048e-02	ci right 1.372427e-02	k: 3452	n:260000
Cons ci ratio: 1.401476e-01	ci left: 2.789704e-03	ci right 3.213802e-03	k: 779	n:260000
KS ci ratio: 7.290116e-03	ci left: 5.246055e-01	ci right 5.284477e-01	k: 136897	n:260000
DOCK10   260000 perm   102 sec   (2550 perm/sec)   p_kst 5.265269e-01   p_cons 2.996154e-03   p_joint 1.327692e-02

Joint ci ratio: 6.525538e-02	ci left: 1.275831e-02	ci right 1.362256e-02	k: 3560	n:270000
Cons ci ratio: 1.372730e-01	ci left: 2.804364e-03	ci right 3.221232e-03	k: 812	n:270000
KS ci ratio: 7.153165e-03	ci left: 5.246886e-01	ci right 5.284589e-01	k: 142175	n:270000
DOCK10   270000 perm   107 sec   (2526 perm/sec)   p_kst 5.265741e-01   p_cons 3.007407e-03   p_joint 1.318519e-02

Joint ci ratio: 6.492100e-02	ci left: 1.243609e-02	ci right 1.327404e-02	k: 3598	n:280000
Cons ci ratio: 1.344091e-01	ci left: 2.824962e-03	ci right 3.235431e-03	k: 847	n:280000
KS ci ratio: 7.022697e-03	ci left: 5.248343e-01	ci right 5.285366e-01	k: 147472	n:280000
DOCK10   280000 perm   112 sec   (2498 perm/sec)   p_kst 5.266857e-01   p_cons 3.025000e-03   p_joint 1.285000e-02

Joint ci ratio: 6.244408e-02	ci left: 1.298806e-02	ci right 1.382860e-02	k: 3887	n:290000
Cons ci ratio: 1.317173e-01	ci left: 2.844224e-03	ci right 3.248567e-03	k: 882	n:290000
KS ci ratio: 6.901025e-03	ci left: 5.248325e-01	ci right 5.284704e-01	k: 152729	n:290000
DOCK10   290000 perm   117 sec   (2475 perm/sec)   p_kst 5.266517e-01   p_cons 3.041379e-03   p_joint 1.340345e-02

Joint ci ratio: 6.250710e-02	ci left: 1.253535e-02	ci right 1.334744e-02	k: 3881	n:300000
Cons ci ratio: 1.296778e-01	ci left: 2.839698e-03	ci right 3.236665e-03	k: 910	n:300000
KS ci ratio: 6.784151e-03	ci left: 5.249281e-01	ci right 5.285047e-01	k: 158015	n:300000
DOCK10   300000 perm   122 sec   (2452 perm/sec)   p_kst 5.267167e-01   p_cons 3.033333e-03   p_joint 1.293667e-02

Joint ci ratio: 6.294034e-02	ci left: 1.196894e-02	ci right 1.274990e-02	k: 3830	n:310000
Cons ci ratio: 1.273229e-01	ci left: 2.854248e-03	ci right 3.245456e-03	k: 944	n:310000
KS ci ratio: 6.674315e-03	ci left: 5.249212e-01	ci right 5.284396e-01	k: 163271	n:310000
DOCK10   310000 perm   128 sec   (2430 perm/sec)   p_kst 5.266806e-01   p_cons 3.045161e-03   p_joint 1.235484e-02

Joint ci ratio: 6.011758e-02	ci left: 1.271813e-02	ci right 1.350947e-02	k: 4195	n:320000
Cons ci ratio: 1.254134e-01	ci left: 2.852813e-03	ci right 3.237524e-03	k: 973	n:320000
KS ci ratio: 6.565325e-03	ci left: 5.252433e-01	ci right 5.287062e-01	k: 168632	n:320000
DOCK10   320000 perm   133 sec   (2403 perm/sec)   p_kst 5.269750e-01   p_cons 3.040625e-03   p_joint 1.310937e-02

Joint ci ratio: 6.047366e-02	ci left: 1.219236e-02	ci right 1.295563e-02	k: 4148	n:330000
Cons ci ratio: 1.233409e-01	ci left: 2.863253e-03	ci right 3.242526e-03	k: 1006	n:330000
KS ci ratio: 6.466845e-03	ci left: 5.251342e-01	ci right 5.285441e-01	k: 173857	n:330000
DOCK10   330000 perm   139 sec   (2382 perm/sec)   p_kst 5.268394e-01   p_cons 3.048485e-03   p_joint 1.256970e-02

Joint ci ratio: 5.583823e-02	ci left: 1.388910e-02	ci right 1.468980e-02	k: 4857	n:340000
Cons ci ratio: 1.211926e-01	ci left: 2.881686e-03	ci right 3.256275e-03	k: 1042	n:340000
KS ci ratio: 6.369321e-03	ci left: 5.252936e-01	ci right 5.286530e-01	k: 179171	n:340000
DOCK10   340000 perm   144 sec   (2360 perm/sec)   p_kst 5.269735e-01   p_cons 3.064706e-03   p_joint 1.428529e-02

Joint ci ratio: 5.558354e-02	ci left: 1.362181e-02	ci right 1.440341e-02	k: 4903	n:350000
Cons ci ratio: 1.197105e-01	ci left: 2.871398e-03	ci right 3.239763e-03	k: 1068	n:350000
KS ci ratio: 6.275469e-03	ci left: 5.254929e-01	ci right 5.288038e-01	k: 184502	n:350000
DOCK10   350000 perm   150 sec   (2340 perm/sec)   p_kst 5.271486e-01   p_cons 3.051429e-03   p_joint 1.400857e-02

Joint ci ratio: 5.568090e-02	ci left: 1.320226e-02	ci right 1.396115e-02	k: 4888	n:360000
Cons ci ratio: 1.185533e-01	ci left: 2.848230e-03	ci right 3.209843e-03	k: 1089	n:360000
KS ci ratio: 6.187713e-03	ci left: 5.255147e-01	ci right 5.287793e-01	k: 189773	n:360000
DOCK10   360000 perm   155 sec   (2320 perm/sec)   p_kst 5.271472e-01   p_cons 3.025000e-03   p_joint 1.357778e-02

Joint ci ratio: 5.596450e-02	ci left: 1.272010e-02	ci right 1.345512e-02	k: 4841	n:370000
Cons ci ratio: 1.172703e-01	ci left: 2.834202e-03	ci right 3.189869e-03	k: 1113	n:370000
KS ci ratio: 6.103307e-03	ci left: 5.255546e-01	ci right 5.287747e-01	k: 195051	n:370000
DOCK10   370000 perm   161 sec   (2299 perm/sec)   p_kst 5.271649e-01   p_cons 3.008108e-03   p_joint 1.308378e-02

Joint ci ratio: 5.522809e-02	ci left: 1.272271e-02	ci right 1.344790e-02	k: 4971	n:380000
Cons ci ratio: 1.160281e-01	ci left: 2.820931e-03	ci right 3.170926e-03	k: 1137	n:380000
KS ci ratio: 6.022868e-03	ci left: 5.255427e-01	ci right 5.287201e-01	k: 200310	n:380000
DOCK10   380000 perm   167 sec   (2280 perm/sec)   p_kst 5.271316e-01   p_cons 2.992105e-03   p_joint 1.308158e-02

Joint ci ratio: 5.338632e-02	ci left: 1.327172e-02	ci right 1.400220e-02	k: 5317	n:390000
Cons ci ratio: 1.146268e-01	ci left: 2.818323e-03	ci right 3.163486e-03	k: 1165	n:390000
KS ci ratio: 5.945068e-03	ci left: 5.255701e-01	ci right 5.287065e-01	k: 205584	n:390000
DOCK10   390000 perm   173 sec   (2261 perm/sec)   p_kst 5.271385e-01   p_cons 2.987179e-03   p_joint 1.363333e-02

Joint ci ratio: 5.133152e-02	ci left: 1.400099e-02	ci right 1.474107e-02	k: 5747	n:400000
Cons ci ratio: 1.129906e-01	ci left: 2.830446e-03	ci right 3.171816e-03	k: 1199	n:400000
KS ci ratio: 5.707938e-03	ci left: 5.395492e-01	ci right 5.426402e-01	k: 216438	n:400000
DOCK10   400000 perm   178 sec   (2242 perm/sec)   p_kst 5.410950e-01   p_cons 2.997500e-03   p_joint 1.436750e-02

Joint ci ratio: 5.062196e-02	ci left: 1.404960e-02	ci right 1.478168e-02	k: 5909	n:410000
Cons ci ratio: 1.116497e-01	ci left: 2.830156e-03	ci right 3.167173e-03	k: 1228	n:410000
KS ci ratio: 5.636044e-03	ci left: 5.397318e-01	ci right 5.427847e-01	k: 221916	n:410000
DOCK10   410000 perm   184 sec   (2223 perm/sec)   p_kst 5.412585e-01   p_cons 2.995122e-03   p_joint 1.441220e-02

Joint ci ratio: 5.024415e-02	ci left: 1.392665e-02	ci right 1.464675e-02	k: 5999	n:420000
Cons ci ratio: 1.103115e-01	ci left: 2.832217e-03	ci right 3.165174e-03	k: 1258	n:420000
KS ci ratio: 5.568346e-03	ci left: 5.397677e-01	ci right 5.427841e-01	k: 227336	n:420000
DOCK10   420000 perm   191 sec   (2205 perm/sec)   p_kst 5.412762e-01   p_cons 2.995238e-03   p_joint 1.428333e-02

Joint ci ratio: 4.970516e-02	ci left: 1.390361e-02	ci right 1.461459e-02	k: 6130	n:430000
Cons ci ratio: 1.088932e-01	ci left: 2.840992e-03	ci right 3.170412e-03	k: 1291	n:430000
KS ci ratio: 5.501691e-03	ci left: 5.399232e-01	ci right 5.429042e-01	k: 232808	n:430000
DOCK10   430000 perm   197 sec   (2187 perm/sec)   p_kst 5.414140e-01   p_cons 3.002326e-03   p_joint 1.425581e-02

Joint ci ratio: 4.954967e-02	ci left: 1.367736e-02	ci right 1.437452e-02	k: 6170	n:440000
Cons ci ratio: 1.078143e-01	ci left: 2.833913e-03	ci right 3.159050e-03	k: 1317	n:440000
KS ci ratio: 5.438418e-03	ci left: 5.399763e-01	ci right 5.429232e-01	k: 238238	n:440000
DOCK10   440000 perm   203 sec   (2170 perm/sec)   p_kst 5.414500e-01   p_cons 2.993182e-03   p_joint 1.402273e-02

Joint ci ratio: 4.864640e-02	ci left: 1.387829e-02	ci right 1.457243e-02	k: 6400	n:450000
Cons ci ratio: 1.068466e-01	ci left: 2.822838e-03	ci right 3.143614e-03	k: 1341	n:450000
KS ci ratio: 5.377784e-03	ci left: 5.399806e-01	ci right 5.428945e-01	k: 243647	n:450000
DOCK10   450000 perm   209 sec   (2152 perm/sec)   p_kst 5.414378e-01   p_cons 2.980000e-03   p_joint 1.422222e-02

Joint ci ratio: 4.868489e-02	ci left: 1.355935e-02	ci right 1.423809e-02	k: 6392	n:460000
Cons ci ratio: 1.059434e-01	ci left: 2.810141e-03	ci right 3.126606e-03	k: 1364	n:460000
KS ci ratio: 5.319647e-03	ci left: 5.399370e-01	ci right 5.428190e-01	k: 249034	n:460000
DOCK10   460000 perm   215 sec   (2135 perm/sec)   p_kst 5.413783e-01   p_cons 2.965217e-03   p_joint 1.389565e-02

Joint ci ratio: 4.746880e-02	ci left: 1.396251e-02	ci right 1.464350e-02	k: 6721	n:470000
Cons ci ratio: 1.046101e-01	ci left: 2.822859e-03	ci right 3.136510e-03	k: 1399	n:470000
KS ci ratio: 5.261709e-03	ci left: 5.400508e-01	ci right 5.429019e-01	k: 254494	n:470000
DOCK10   470000 perm   222 sec   (2118 perm/sec)   p_kst 5.414766e-01   p_cons 2.976596e-03   p_joint 1.430000e-02

Joint ci ratio: 4.709025e-02	ci left: 1.389601e-02	ci right 1.456820e-02	k: 6830	n:480000
Cons ci ratio: 1.035797e-01	ci left: 2.820864e-03	ci right 3.131017e-03	k: 1427	n:480000
KS ci ratio: 5.206388e-03	ci left: 5.400870e-01	ci right 5.429083e-01	k: 259919	n:480000
DOCK10   480000 perm   228 sec   (2101 perm/sec)   p_kst 5.414979e-01   p_cons 2.972917e-03   p_joint 1.422917e-02

Joint ci ratio: 4.691296e-02	ci left: 1.371928e-02	ci right 1.438036e-02	k: 6883	n:490000
Cons ci ratio: 1.026144e-01	ci left: 2.816976e-03	ci right 3.123642e-03	k: 1454	n:490000
KS ci ratio: 5.151738e-03	ci left: 5.402220e-01	ci right 5.430143e-01	k: 265393	n:490000
DOCK10   490000 perm   235 sec   (2085 perm/sec)   p_kst 5.416184e-01   p_cons 2.967347e-03   p_joint 1.404694e-02

Joint ci ratio: 4.641631e-02	ci left: 1.373745e-02	ci right 1.439220e-02	k: 7031	n:500000
Cons ci ratio: 1.014015e-01	ci left: 2.828851e-03	ci right 3.132953e-03	k: 1489	n:500000
KS ci ratio: 5.099348e-03	ci left: 5.402957e-01	ci right 5.430598e-01	k: 270839	n:500000
DOCK10   500000 perm   242 sec   (2069 perm/sec)   p_kst 5.416780e-01   p_cons 2.978000e-03   p_joint 1.406200e-02

Joint ci ratio: 4.803083e-02	ci left: 1.258240e-02	ci right 1.320354e-02	k: 6574	n:510000
Cons ci ratio: 1.040280e-01	ci left: 2.631999e-03	ci right 2.922715e-03	k: 1415	n:510000
KS ci ratio: 5.048684e-03	ci left: 5.403509e-01	ci right 5.430878e-01	k: 276277	n:510000
DOCK10   510000 perm   248 sec   (2053 perm/sec)   p_kst 5.417196e-01   p_cons 2.774510e-03   p_joint 1.289020e-02

Joint ci ratio: 4.770000e-02	ci left: 1.251523e-02	ci right 1.312868e-02	k: 6666	n:520000
Cons ci ratio: 1.029430e-01	ci left: 2.637583e-03	ci right 2.925694e-03	k: 1445	n:520000
KS ci ratio: 5.000082e-03	ci left: 5.403465e-01	ci right 5.430569e-01	k: 281685	n:520000
DOCK10   520000 perm   255 sec   (2038 perm/sec)   p_kst 5.417019e-01   p_cons 2.778846e-03   p_joint 1.281923e-02

Joint ci ratio: 4.753644e-02	ci left: 1.236669e-02	ci right 1.297073e-02	k: 6713	n:530000
Cons ci ratio: 1.018913e-01	ci left: 2.642971e-03	ci right 2.928545e-03	k: 1475	n:530000
KS ci ratio: 4.951615e-03	ci left: 5.404669e-01	ci right 5.431515e-01	k: 287159	n:530000
DOCK10   530000 perm   262 sec   (2023 perm/sec)   p_kst 5.418094e-01   p_cons 2.783019e-03   p_joint 1.266604e-02

Joint ci ratio: 4.790097e-02	ci left: 1.195647e-02	ci right 1.254507e-02	k: 6614	n:540000
Cons ci ratio: 1.009383e-01	ci left: 2.644564e-03	ci right 2.927479e-03	k: 1503	n:540000
KS ci ratio: 4.905591e-03	ci left: 5.404755e-01	ci right 5.431352e-01	k: 292575	n:540000
DOCK10   540000 perm   269 sec   (2008 perm/sec)   p_kst 5.418056e-01   p_cons 2.783333e-03   p_joint 1.224815e-02

Joint ci ratio: 4.706378e-02	ci left: 1.216311e-02	ci right 1.275113e-02	k: 6850	n:550000
Cons ci ratio: 9.997893e-02	ci left: 2.647884e-03	ci right 2.928304e-03	k: 1532	n:550000
KS ci ratio: 4.860898e-03	ci left: 5.404766e-01	ci right 5.431120e-01	k: 297987	n:550000
DOCK10   550000 perm   276 sec   (1993 perm/sec)   p_kst 5.417945e-01   p_cons 2.785455e-03   p_joint 1.245455e-02

Outputting figure to mutsig2_images.part000000000052/DOCK10.16_6785_550000_0.54179_0.0027855_0.012455.png
                gene_name: DOCK10
               theta_stop: 0.100 
                    nperm: 550000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.0028 
      ci_cons_bounds_left: 0.0026 
     ci_cons_bounds_right: 0.0029 
                  p_joint: 0.012 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.013 

Current progress: 4 percent done.
DOCK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.131928e-01	ci left: 2.920604e-02	ci right 3.626959e-02	k: 326	n:10000
Cons ci ratio: 1.409374e-01	ci left: 6.671876e-02	ci right 7.693236e-02	k: 717	n:10000
KS ci ratio: 1.544678e-01	ci left: 5.580941e-02	ci right 6.524862e-02	k: 604	n:10000
DOCK2   10000 perm   2 sec   (4180 perm/sec)   p_kst 6.040000e-02   p_cons 7.170000e-02   p_joint 3.260000e-02

Joint ci ratio: 1.193201e-01	ci left: 4.813723e-02	ci right 5.429407e-02	k: 1023	n:20000
Cons ci ratio: 1.009921e-01	ci left: 6.650160e-02	ci right 7.362401e-02	k: 1400	n:20000
KS ci ratio: 1.082314e-01	ci left: 5.820936e-02	ci right 6.491880e-02	k: 1230	n:20000
DOCK2   20000 perm   5 sec   (3854 perm/sec)   p_kst 6.150000e-02   p_cons 7.000000e-02   p_joint 5.115000e-02

Joint ci ratio: 1.100160e-01	ci left: 3.836215e-02	ci right 4.286070e-02	k: 1217	n:30000
Cons ci ratio: 8.234451e-02	ci left: 6.733404e-02	ci right 7.314952e-02	k: 2106	n:30000
KS ci ratio: 8.866577e-02	ci left: 5.844827e-02	ci right 6.390376e-02	k: 1834	n:30000
DOCK2   30000 perm   8 sec   (3724 perm/sec)   p_kst 6.113333e-02   p_cons 7.020000e-02   p_joint 4.056667e-02

Joint ci ratio: 9.722791e-02	ci left: 3.714825e-02	ci right 4.096904e-02	k: 1561	n:40000
Cons ci ratio: 7.188307e-02	ci left: 6.670712e-02	ci right 7.170564e-02	k: 2767	n:40000
KS ci ratio: 7.649887e-02	ci left: 5.923869e-02	ci right 6.397520e-02	k: 2463	n:40000
DOCK2   40000 perm   11 sec   (3637 perm/sec)   p_kst 6.157500e-02   p_cons 6.917500e-02   p_joint 3.902500e-02

Outputting figure to mutsig2_images.part000000000052/DOCK2.15_5701_40000_0.061575_0.069175_0.039025.png
                gene_name: DOCK2
               theta_stop: 0.097 
                    nperm: 40000 
                     p_ks: 0.062 
        ci_ks_bounds_left: 0.059 
       ci_ks_bounds_right: 0.064 
                   p_cons: 0.069 
      ci_cons_bounds_left: 0.067 
     ci_cons_bounds_right: 0.072 
                  p_joint: 0.039 
     ci_joint_bounds_left: 0.037 
    ci_joint_bounds_right: 0.041 

Current progress: 6 percent done.
DPP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.427287e-02	ci left: 5.569195e-01	ci right 5.764416e-01	k: 5667	n:10000
Cons ci ratio: 2.521587e-02	ci left: 6.982727e-01	ci right 7.162065e-01	k: 7073	n:10000
KS ci ratio: 5.288510e-02	ci left: 3.451178e-01	ci right 3.639670e-01	k: 3545	n:10000
DPP6   10000 perm   2 sec   (5054 perm/sec)   p_kst 3.545000e-01   p_cons 7.073000e-01   p_joint 5.667000e-01

Outputting figure to mutsig2_images.part000000000052/DPP6.13_2818_10000_0.3545_0.7073_0.5667.png
                gene_name: DPP6
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 8 percent done.
DOCK11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.557379e-02	ci left: 2.039253e-01	ci right 2.200428e-01	k: 2119	n:10000
Cons ci ratio: 2.492999e-02	ci left: 7.030138e-01	ci right 7.208626e-01	k: 7120	n:10000
KS ci ratio: 1.026335e-01	ci left: 1.207287e-01	ci right 1.338892e-01	k: 1272	n:10000
DOCK11   10000 perm   2 sec   (4064 perm/sec)   p_kst 1.272000e-01   p_cons 7.120000e-01   p_joint 2.119000e-01

Joint ci ratio: 4.646655e-02	ci left: 2.563128e-01	ci right 2.685564e-01	k: 5248	n:20000
Cons ci ratio: 1.787167e-02	ci left: 6.999835e-01	ci right 7.126565e-01	k: 14127	n:20000
KS ci ratio: 7.186426e-02	ci left: 1.248267e-01	ci right 1.341813e-01	k: 2589	n:20000
DOCK11   20000 perm   5 sec   (3711 perm/sec)   p_kst 1.294500e-01   p_cons 7.063500e-01   p_joint 2.624000e-01

Outputting figure to mutsig2_images.part000000000052/DOCK11.12_6434_20000_0.12945_0.70635_0.2624.png
                gene_name: DOCK11
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 10 percent done.
DPPA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.552242e-02	ci left: 4.159818e-01	ci right 4.354615e-01	k: 4257	n:10000
Cons ci ratio: 4.093336e-02	ci left: 4.684669e-01	ci right 4.881457e-01	k: 4783	n:10000
KS ci ratio: 5.811568e-02	ci left: 3.035202e-01	ci right 3.217891e-01	k: 3126	n:10000
DPPA4   10000 perm   2 sec   (5384 perm/sec)   p_kst 3.126000e-01   p_cons 4.783000e-01   p_joint 4.257000e-01

Outputting figure to mutsig2_images.part000000000052/DPPA4.12_943_10000_0.3126_0.4783_0.4257.png
                gene_name: DPPA4
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 12 percent done.
DNM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.870226e-02	ci left: 8.068419e-01	ci right 8.221744e-01	k: 8146	n:10000
KS ci ratio: 1.884446e-02	ci left: 8.045063e-01	ci right 8.199113e-01	k: 8123	n:10000
DNM3   10000 perm   2 sec   (4887 perm/sec)   p_kst 8.123000e-01   p_cons 8.146000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000052/DNM3.9_2676_10000_0.8123_0.8146_1.png
                gene_name: DNM3
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 14 percent done.
DOCK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.769094e-01	ci left: 8.686342e-03	ci right 1.280614e-02	k: 106	n:10000
Cons ci ratio: 2.505034e-01	ci left: 2.090184e-02	ci right 2.697984e-02	k: 238	n:10000
KS ci ratio: 1.265054e-01	ci left: 8.203252e-02	ci right 9.320908e-02	k: 875	n:10000
DOCK4   10000 perm   2 sec   (4162 perm/sec)   p_kst 8.750000e-02   p_cons 2.380000e-02   p_joint 1.060000e-02

Joint ci ratio: 1.255149e-01	ci left: 4.357437e-02	ci right 4.945837e-02	k: 929	n:20000
Cons ci ratio: 1.656068e-01	ci left: 2.498955e-02	ci right 2.954929e-02	k: 544	n:20000
KS ci ratio: 8.862553e-02	ci left: 8.513767e-02	ci right 9.308226e-02	k: 1781	n:20000
DOCK4   20000 perm   5 sec   (3814 perm/sec)   p_kst 8.905000e-02   p_cons 2.720000e-02   p_joint 4.645000e-02

Joint ci ratio: 1.690855e-01	ci left: 1.611029e-02	ci right 1.911750e-02	k: 527	n:30000
Cons ci ratio: 1.387023e-01	ci left: 2.413198e-02	ci right 2.776061e-02	k: 777	n:30000
KS ci ratio: 7.134208e-02	ci left: 8.816204e-02	ci right 9.471733e-02	k: 2742	n:30000
DOCK4   30000 perm   8 sec   (3680 perm/sec)   p_kst 9.140000e-02   p_cons 2.590000e-02   p_joint 1.756667e-02

Joint ci ratio: 1.360745e-01	ci left: 1.894039e-02	ci right 2.172985e-02	k: 812	n:40000
Cons ci ratio: 1.190832e-01	ci left: 2.480228e-02	ci right 2.796698e-02	k: 1054	n:40000
KS ci ratio: 6.134526e-02	ci left: 8.977646e-02	ci right 9.548284e-02	k: 3704	n:40000
DOCK4   40000 perm   11 sec   (3590 perm/sec)   p_kst 9.260000e-02   p_cons 2.635000e-02   p_joint 2.030000e-02

Joint ci ratio: 8.619685e-02	ci left: 3.800533e-02	ci right 4.144837e-02	k: 1985	n:50000
Cons ci ratio: 9.913947e-02	ci left: 2.881486e-02	ci right 3.184000e-02	k: 1515	n:50000
KS ci ratio: 5.503448e-02	ci left: 8.957912e-02	ci right 9.466835e-02	k: 4605	n:50000
DOCK4   50000 perm   14 sec   (3522 perm/sec)   p_kst 9.210000e-02   p_cons 3.030000e-02   p_joint 3.970000e-02

Outputting figure to mutsig2_images.part000000000052/DOCK4.9_6109_50000_0.0921_0.0303_0.0397.png
                gene_name: DOCK4
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.092 
        ci_ks_bounds_left: 0.090 
       ci_ks_bounds_right: 0.095 
                   p_cons: 0.030 
      ci_cons_bounds_left: 0.029 
     ci_cons_bounds_right: 0.032 
                  p_joint: 0.040 
     ci_joint_bounds_left: 0.038 
    ci_joint_bounds_right: 0.041 

Current progress: 16 percent done.
DOCK5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.468960e-02	ci left: 1.393291e-01	ci right 1.532776e-01	k: 1462	n:10000
Cons ci ratio: 7.002437e-02	ci left: 2.301744e-01	ci right 2.469782e-01	k: 2385	n:10000
KS ci ratio: 1.572531e-01	ci left: 5.388306e-02	ci right 6.317620e-02	k: 584	n:10000
DOCK5   10000 perm   2 sec   (4492 perm/sec)   p_kst 5.840000e-02   p_cons 2.385000e-01   p_joint 1.462000e-01

Joint ci ratio: 9.833821e-02	ci left: 6.996946e-02	ci right 7.725509e-02	k: 1471	n:20000
Cons ci ratio: 4.969984e-02	ci left: 2.313184e-01	ci right 2.431581e-01	k: 4744	n:20000
KS ci ratio: 1.076271e-01	ci left: 5.884288e-02	ci right 6.558509e-02	k: 1243	n:20000
DOCK5   20000 perm   5 sec   (4083 perm/sec)   p_kst 6.215000e-02   p_cons 2.372000e-01   p_joint 7.355000e-02

Joint ci ratio: 6.327110e-02	ci left: 1.098328e-01	ci right 1.170422e-01	k: 3402	n:30000
Cons ci ratio: 4.091342e-02	ci left: 2.294832e-01	ci right 2.391016e-01	k: 7028	n:30000
KS ci ratio: 8.960573e-02	ci left: 5.727341e-02	ci right 6.267886e-02	k: 1798	n:30000
DOCK5   30000 perm   8 sec   (3922 perm/sec)   p_kst 5.993333e-02   p_cons 2.342667e-01   p_joint 1.134000e-01

Outputting figure to mutsig2_images.part000000000052/DOCK5.9_5821_30000_0.059933_0.23427_0.1134.png
                gene_name: DOCK5
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.060 
        ci_ks_bounds_left: 0.057 
       ci_ks_bounds_right: 0.063 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 18 percent done.
DPYD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.231453e-01	ci left: 8.630741e-02	ci right 9.773155e-02	k: 919	n:10000
Cons ci ratio: 1.339460e-02	ci left: 8.893387e-01	ci right 9.014299e-01	k: 8955	n:10000
KS ci ratio: 1.771017e-01	ci left: 4.255135e-02	ci right 5.091525e-02	k: 466	n:10000
DPYD   10000 perm   2 sec   (4734 perm/sec)   p_kst 4.660000e-02   p_cons 8.955000e-01   p_joint 9.190000e-02

Joint ci ratio: 8.923154e-02	ci left: 8.405991e-02	ci right 9.196034e-02	k: 1759	n:20000
Cons ci ratio: 9.432145e-03	ci left: 8.919411e-01	ci right 9.004433e-01	k: 17925	n:20000
KS ci ratio: 1.234409e-01	ci left: 4.502977e-02	ci right 5.100252e-02	k: 959	n:20000
DPYD   20000 perm   5 sec   (4326 perm/sec)   p_kst 4.795000e-02   p_cons 8.962500e-01   p_joint 8.795000e-02

Joint ci ratio: 7.804577e-02	ci left: 7.453141e-02	ci right 8.061736e-02	k: 2326	n:30000
Cons ci ratio: 7.649111e-03	ci left: 8.940126e-01	ci right 9.009102e-01	k: 26925	n:30000
KS ci ratio: 9.981082e-02	ci left: 4.645421e-02	ci right 5.136696e-02	k: 1466	n:30000
DPYD   30000 perm   8 sec   (3947 perm/sec)   p_kst 4.886667e-02   p_cons 8.975000e-01   p_joint 7.753333e-02

Outputting figure to mutsig2_images.part000000000052/DPYD.8_3213_30000_0.048867_0.8975_0.077533.png
                gene_name: DPYD
               theta_stop: 0.100 
                    nperm: 30000 
                     p_ks: 0.049 
        ci_ks_bounds_left: 0.046 
       ci_ks_bounds_right: 0.051 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.078 
     ci_joint_bounds_left: 0.075 
    ci_joint_bounds_right: 0.081 

Current progress: 20 percent done.
DPYSL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.852468e-02	ci left: 3.852013e-01	ci right 4.044600e-01	k: 3948	n:10000
Cons ci ratio: 8.409273e-02	ci left: 1.709408e-01	ci right 1.860470e-01	k: 1784	n:10000
KS ci ratio: 3.041956e-02	ci left: 6.145218e-01	ci right 6.336059e-01	k: 6241	n:10000
DPYSL5   10000 perm   2 sec   (5711 perm/sec)   p_kst 6.241000e-01   p_cons 1.784000e-01   p_joint 3.948000e-01

Outputting figure to mutsig2_images.part000000000052/DPYSL5.8_1743_10000_0.6241_0.1784_0.3948.png
                gene_name: DPYSL5
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.40 

Current progress: 22 percent done.
DNMT3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.030900e-02	ci left: 2.879553e-01	ci right 3.059631e-01	k: 2969	n:10000
Cons ci ratio: 6.036682e-02	ci left: 2.875589e-01	ci right 3.055598e-01	k: 2965	n:10000
KS ci ratio: 7.501285e-02	ci left: 2.063903e-01	ci right 2.225764e-01	k: 2144	n:10000
DNMT3A   10000 perm   2 sec   (5097 perm/sec)   p_kst 2.144000e-01   p_cons 2.965000e-01   p_joint 2.969000e-01

Outputting figure to mutsig2_images.part000000000052/DNMT3A.7_2960_10000_0.2144_0.2965_0.2969.png
                gene_name: DNMT3A
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 24 percent done.
DOPEY1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.455982e-02	ci left: 5.528102e-01	ci right 5.723533e-01	k: 5626	n:10000
KS ci ratio: 8.780620e-03	ci left: 9.479391e-01	ci right 9.563950e-01	k: 9523	n:10000
DOPEY1   10000 perm   2 sec   (4041 perm/sec)   p_kst 9.523000e-01   p_cons 5.626000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000052/DOPEY1.7_7546_10000_0.9523_0.5626_1.png
                gene_name: DOPEY1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 25 percent done.
DPP8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.533935e-02	ci left: 1.376631e-01	ci right 1.515446e-01	k: 1445	n:10000
Cons ci ratio: 3.507522e-02	ci left: 5.454954e-01	ci right 5.650724e-01	k: 5553	n:10000
KS ci ratio: 1.362898e-01	ci left: 7.117069e-02	ci right 8.167765e-02	k: 763	n:10000
DPP8   10000 perm   2 sec   (5430 perm/sec)   p_kst 7.630000e-02   p_cons 5.553000e-01   p_joint 1.445000e-01

Joint ci ratio: 6.852811e-02	ci left: 1.357607e-01	ci right 1.454440e-01	k: 2811	n:20000
Cons ci ratio: 2.497975e-02	ci left: 5.448757e-01	ci right 5.587093e-01	k: 11036	n:20000
KS ci ratio: 9.536353e-02	ci left: 7.417323e-02	ci right 8.165003e-02	k: 1557	n:20000
DPP8   20000 perm   4 sec   (4872 perm/sec)   p_kst 7.785000e-02   p_cons 5.518000e-01   p_joint 1.405500e-01

Outputting figure to mutsig2_images.part000000000052/DPP8.7_2777_20000_0.07785_0.5518_0.14055.png
                gene_name: DPP8
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.078 
        ci_ks_bounds_left: 0.074 
       ci_ks_bounds_right: 0.082 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 27 percent done.
DPPA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.308428e-02	ci left: 7.338101e-01	ci right 7.510485e-01	k: 7425	n:10000
Cons ci ratio: 4.265357e-02	ci left: 4.479986e-01	ci right 4.676260e-01	k: 4578	n:10000
KS ci ratio: 1.425160e-02	ci left: 8.768454e-01	ci right 8.895304e-01	k: 8833	n:10000
DPPA2   10000 perm   2 sec   (5592 perm/sec)   p_kst 8.833000e-01   p_cons 4.578000e-01   p_joint 7.425000e-01

Outputting figure to mutsig2_images.part000000000052/DPPA2.7_925_10000_0.8833_0.4578_0.7425.png
                gene_name: DPPA2
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 29 percent done.
DNMBP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.063013e-01	ci left: 1.133015e-01	ci right 1.261210e-01	k: 1196	n:10000
Cons ci ratio: 8.467069e-02	ci left: 1.689744e-01	ci right 1.840145e-01	k: 1764	n:10000
KS ci ratio: 1.219088e-01	ci left: 8.796014e-02	ci right 9.947780e-02	k: 936	n:10000
DNMBP   10000 perm   2 sec   (4629 perm/sec)   p_kst 9.360000e-02   p_cons 1.764000e-01   p_joint 1.196000e-01

Joint ci ratio: 8.324667e-02	ci left: 9.563031e-02	ci right 1.039865e-01	k: 1995	n:20000
Cons ci ratio: 6.123536e-02	ci left: 1.648173e-01	ci right 1.752788e-01	k: 3400	n:20000
KS ci ratio: 8.592627e-02	ci left: 9.018588e-02	ci right 9.833252e-02	k: 1884	n:20000
DNMBP   20000 perm   5 sec   (4149 perm/sec)   p_kst 9.420000e-02   p_cons 1.700000e-01   p_joint 9.975000e-02

Outputting figure to mutsig2_images.part000000000052/DNMBP.6_4798_20000_0.0942_0.17_0.09975.png
                gene_name: DNMBP
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.094 
        ci_ks_bounds_left: 0.090 
       ci_ks_bounds_right: 0.098 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.100 
     ci_joint_bounds_left: 0.096 
    ci_joint_bounds_right: 0.10 

Current progress: 31 percent done.
DOCK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.028430e-02	ci left: 1.847145e-01	ci right 2.002650e-01	k: 1924	n:10000
Cons ci ratio: 6.273467e-02	ci left: 2.719080e-01	ci right 2.896199e-01	k: 2807	n:10000
KS ci ratio: 1.013601e-01	ci left: 1.234670e-01	ci right 1.367493e-01	k: 1300	n:10000
DOCK3   10000 perm   2 sec   (4646 perm/sec)   p_kst 1.300000e-01   p_cons 2.807000e-01   p_joint 1.924000e-01

Joint ci ratio: 6.320487e-02	ci left: 1.561777e-01	ci right 1.664210e-01	k: 3225	n:20000
Cons ci ratio: 4.388200e-02	ci left: 2.788994e-01	ci right 2.914631e-01	k: 5703	n:20000
KS ci ratio: 7.212038e-02	ci left: 1.240390e-01	ci right 1.333692e-01	k: 2573	n:20000
DOCK3   20000 perm   5 sec   (4200 perm/sec)   p_kst 1.286500e-01   p_cons 2.851500e-01   p_joint 1.612500e-01

Outputting figure to mutsig2_images.part000000000052/DOCK3.6_6305_20000_0.12865_0.28515_0.16125.png
                gene_name: DOCK3
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 33 percent done.
DOCK7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.795085e-02	ci left: 3.908763e-01	ci right 4.101817e-01	k: 4005	n:10000
Cons ci ratio: 1.421137e-01	ci left: 6.565505e-02	ci right 7.579675e-02	k: 706	n:10000
KS ci ratio: 8.943382e-03	ci left: 9.461696e-01	ci right 9.547655e-01	k: 9506	n:10000
DOCK7   10000 perm   2 sec   (4115 perm/sec)   p_kst 9.506000e-01   p_cons 7.060000e-02   p_joint 4.005000e-01

Joint ci ratio: 4.294309e-02	ci left: 2.877409e-01	ci right 3.004190e-01	k: 5881	n:20000
Cons ci ratio: 9.947345e-02	ci left: 6.845501e-02	ci right 7.567000e-02	k: 1440	n:20000
KS ci ratio: 4.673610e-03	ci left: 9.700347e-01	ci right 9.746266e-01	k: 19448	n:20000
DOCK7   20000 perm   5 sec   (3770 perm/sec)   p_kst 9.724000e-01   p_cons 7.200000e-02   p_joint 2.940500e-01

Outputting figure to mutsig2_images.part000000000052/DOCK7.6_6526_20000_0.9724_0.072_0.29405.png
                gene_name: DOCK7
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.072 
      ci_cons_bounds_left: 0.068 
     ci_cons_bounds_right: 0.076 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 35 percent done.
DPYS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.521756e-02	ci left: 3.257483e-01	ci right 3.443479e-01	k: 3350	n:10000
Cons ci ratio: 5.076980e-02	ci left: 3.639075e-01	ci right 3.829663e-01	k: 3734	n:10000
KS ci ratio: 7.004364e-02	ci left: 2.300756e-01	ci right 2.468770e-01	k: 2384	n:10000
DPYS   10000 perm   2 sec   (5656 perm/sec)   p_kst 2.384000e-01   p_cons 3.734000e-01   p_joint 3.350000e-01

Outputting figure to mutsig2_images.part000000000052/DPYS.6_1596_10000_0.2384_0.3734_0.335.png
                gene_name: DPYS
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 37 percent done.
DOPEY2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.788599e-02	ci left: 1.313941e-01	ci right 1.450174e-01	k: 1381	n:10000
Cons ci ratio: 9.663204e-02	ci left: 1.344301e-01	ci right 1.481796e-01	k: 1412	n:10000
KS ci ratio: 1.109888e-01	ci left: 1.047120e-01	ci right 1.171157e-01	k: 1108	n:10000
DOPEY2   10000 perm   2 sec   (4257 perm/sec)   p_kst 1.108000e-01   p_cons 1.412000e-01   p_joint 1.381000e-01

Joint ci ratio: 9.065067e-02	ci left: 8.161116e-02	ci right 8.940983e-02	k: 1709	n:20000
Cons ci ratio: 6.984875e-02	ci left: 1.312774e-01	ci right 1.408286e-01	k: 2720	n:20000
KS ci ratio: 7.822483e-02	ci left: 1.071696e-01	ci right 1.159437e-01	k: 2230	n:20000
DOPEY2   20000 perm   5 sec   (3901 perm/sec)   p_kst 1.115000e-01   p_cons 1.360000e-01   p_joint 8.545000e-02

Outputting figure to mutsig2_images.part000000000052/DOPEY2.5_7041_20000_0.1115_0.136_0.08545.png
                gene_name: DOPEY2
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.085 
     ci_joint_bounds_left: 0.082 
    ci_joint_bounds_right: 0.089 

Current progress: 39 percent done.
DOT1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.740866e-02	ci left: 5.134552e-01	ci right 5.331312e-01	k: 5233	n:10000
Cons ci ratio: 4.306825e-02	ci left: 4.432085e-01	ci right 4.628189e-01	k: 4530	n:10000
KS ci ratio: 5.070478e-02	ci left: 3.645043e-01	ci right 3.835691e-01	k: 3740	n:10000
DOT1L   10000 perm   2 sec   (4778 perm/sec)   p_kst 3.740000e-01   p_cons 4.530000e-01   p_joint 5.233000e-01

Outputting figure to mutsig2_images.part000000000052/DOT1L.5_4726_10000_0.374_0.453_0.5233.png
                gene_name: DOT1L
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 41 percent done.
DPF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.194651e-02	ci left: 2.205969e-01	ci right 2.371614e-01	k: 2288	n:10000
Cons ci ratio: 2.675954e-02	ci left: 6.728712e-01	ci right 6.912227e-01	k: 6821	n:10000
KS ci ratio: 9.251487e-02	ci left: 1.451135e-01	ci right 1.592898e-01	k: 1521	n:10000
DPF3   10000 perm   2 sec   (6075 perm/sec)   p_kst 1.521000e-01   p_cons 6.821000e-01   p_joint 2.288000e-01

Outputting figure to mutsig2_images.part000000000052/DPF3.5_1110_10000_0.1521_0.6821_0.2288.png
                gene_name: DPF3
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 43 percent done.
DPP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.709323e-02	ci left: 6.674321e-01	ci right 6.858649e-01	k: 6767	n:10000
Cons ci ratio: 4.595323e-02	ci left: 4.113971e-01	ci right 4.308489e-01	k: 4211	n:10000
KS ci ratio: 1.345173e-02	ci left: 8.885187e-01	ci right 9.006503e-01	k: 8947	n:10000
DPP4   10000 perm   2 sec   (5338 perm/sec)   p_kst 8.947000e-01   p_cons 4.211000e-01   p_joint 6.767000e-01

Outputting figure to mutsig2_images.part000000000052/DPP4.5_2405_10000_0.8947_0.4211_0.6767.png
                gene_name: DPP4
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 45 percent done.
DPY19L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.308071e-01	ci left: 7.698582e-02	ci right 8.785890e-02	k: 823	n:10000
Cons ci ratio: 1.114414e-01	ci left: 1.039317e-01	ci right 1.162965e-01	k: 1100	n:10000
KS ci ratio: 8.383558e-02	ci left: 1.718257e-01	ci right 1.869615e-01	k: 1793	n:10000
DPY19L1   10000 perm   2 sec   (6000 perm/sec)   p_kst 1.793000e-01   p_cons 1.100000e-01   p_joint 8.230000e-02

Joint ci ratio: 6.535564e-02	ci left: 1.474447e-01	ci right 1.574565e-01	k: 3048	n:20000
Cons ci ratio: 7.592629e-02	ci left: 1.131172e-01	ci right 1.220943e-01	k: 2351	n:20000
KS ci ratio: 5.986178e-02	ci left: 1.712386e-01	ci right 1.818556e-01	k: 3530	n:20000
DPY19L1   20000 perm   4 sec   (5318 perm/sec)   p_kst 1.765000e-01   p_cons 1.175500e-01   p_joint 1.524000e-01

Outputting figure to mutsig2_images.part000000000052/DPY19L1.5_2116_20000_0.1765_0.11755_0.1524.png
                gene_name: DPY19L1
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 47 percent done.
DNER
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.858457e-02	ci left: 8.087717e-01	ci right 8.240436e-01	k: 8165	n:10000
Cons ci ratio: 3.339492e-02	ci left: 5.696526e-01	ci right 5.891012e-01	k: 5794	n:10000
KS ci ratio: 2.737843e-02	ci left: 6.627999e-01	ci right 6.812998e-01	k: 6721	n:10000
DNER   10000 perm   2 sec   (5564 perm/sec)   p_kst 6.721000e-01   p_cons 5.794000e-01   p_joint 8.165000e-01

Outputting figure to mutsig2_images.part000000000052/DNER.4_2266_10000_0.6721_0.5794_0.8165.png
                gene_name: DNER
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 49 percent done.
DNMT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.633221e-02	ci left: 4.074111e-01	ci right 4.268372e-01	k: 4171	n:10000
Cons ci ratio: 5.461592e-02	ci left: 3.306139e-01	ci right 3.492795e-01	k: 3399	n:10000
KS ci ratio: 6.080366e-02	ci left: 2.845862e-01	ci right 3.025342e-01	k: 2935	n:10000
DNMT1   10000 perm   2 sec   (4726 perm/sec)   p_kst 2.935000e-01   p_cons 3.399000e-01   p_joint 4.171000e-01

Outputting figure to mutsig2_images.part000000000052/DNMT1.4_5063_10000_0.2935_0.3399_0.4171.png
                gene_name: DNMT1
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 51 percent done.
DNMT3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.462512e-03	ci left: 9.849077e-01	ci right 9.894019e-01	k: 9873	n:10000
Cons ci ratio: 3.484857e-02	ci left: 5.487016e-01	ci right 5.682643e-01	k: 5585	n:10000
KS ci ratio: 2.918087e-02	ci left: 6.339212e-01	ci right 6.527952e-01	k: 6434	n:10000
DNMT3B   10000 perm   2 sec   (5356 perm/sec)   p_kst 6.434000e-01   p_cons 5.585000e-01   p_joint 9.873000e-01

Outputting figure to mutsig2_images.part000000000052/DNMT3B.4_2690_10000_0.6434_0.5585_0.9873.png
                gene_name: DNMT3B
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 53 percent done.
DOCK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.516762e-02	ci left: 5.441930e-01	ci right 5.637756e-01	k: 5540	n:10000
Cons ci ratio: 8.082601e-03	ci left: 9.552412e-01	ci right 9.630885e-01	k: 9593	n:10000
KS ci ratio: 4.259349e-02	ci left: 4.486973e-01	ci right 4.683269e-01	k: 4585	n:10000
DOCK1   10000 perm   2 sec   (4036 perm/sec)   p_kst 4.585000e-01   p_cons 9.593000e-01   p_joint 5.540000e-01

Outputting figure to mutsig2_images.part000000000052/DOCK1.4_5806_10000_0.4585_0.9593_0.554.png
                gene_name: DOCK1
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 55 percent done.
DOCK6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.500759e-02	ci left: 3.274362e-01	ci right 3.460590e-01	k: 3367	n:10000
Cons ci ratio: 1.005822e-02	ci left: 9.334051e-01	ci right 9.429377e-01	k: 9383	n:10000
KS ci ratio: 7.566438e-02	ci left: 2.035310e-01	ci right 2.196374e-01	k: 2115	n:10000
DOCK6   10000 perm   2 sec   (4412 perm/sec)   p_kst 2.115000e-01   p_cons 9.383000e-01   p_joint 3.367000e-01

Outputting figure to mutsig2_images.part000000000052/DOCK6.4_6336_10000_0.2115_0.9383_0.3367.png
                gene_name: DOCK6
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 57 percent done.
DOCK8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.210680e-02	ci left: 7.501892e-01	ci right 7.670598e-01	k: 7587	n:10000
KS ci ratio: 6.352252e-03	ci left: 9.712187e-01	ci right 9.775008e-01	k: 9745	n:10000
DOCK8   10000 perm   2 sec   (4320 perm/sec)   p_kst 9.745000e-01   p_cons 7.587000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000052/DOCK8.4_6492_10000_0.9745_0.7587_1.png
                gene_name: DOCK8
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 59 percent done.
DPH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.177165e-02	ci left: 3.548587e-01	ci right 3.738204e-01	k: 3643	n:10000
Cons ci ratio: 7.658334e-02	ci left: 1.995881e-01	ci right 2.155826e-01	k: 2075	n:10000
KS ci ratio: 2.851016e-02	ci left: 6.445828e-01	ci right 6.633275e-01	k: 6540	n:10000
DPH2   10000 perm   2 sec   (6297 perm/sec)   p_kst 6.540000e-01   p_cons 2.075000e-01   p_joint 3.643000e-01

Outputting figure to mutsig2_images.part000000000052/DPH2.4_1494_10000_0.654_0.2075_0.3643.png
                gene_name: DPH2
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 61 percent done.
DPP9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.887534e-02	ci left: 8.039987e-01	ci right 8.194193e-01	k: 8118	n:10000
KS ci ratio: 2.207662e-02	ci left: 7.506950e-01	ci right 7.675538e-01	k: 7592	n:10000
DPP9   10000 perm   2 sec   (5294 perm/sec)   p_kst 7.592000e-01   p_cons 8.118000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000052/DPP9.4_2759_10000_0.7592_0.8118_1.png
                gene_name: DPP9
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 63 percent done.
DPY19L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.033941e-02	ci left: 4.757596e-01	ci right 4.954488e-01	k: 4856	n:10000
KS ci ratio: 1.868988e-02	ci left: 8.070450e-01	ci right 8.223712e-01	k: 8148	n:10000
DPY19L2   10000 perm   2 sec   (5613 perm/sec)   p_kst 8.148000e-01   p_cons 4.856000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000052/DPY19L2.4_2365_10000_0.8148_0.4856_1.png
                gene_name: DPY19L2
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
DPY19L3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.996751e-02	ci left: 6.215560e-01	ci right 6.405676e-01	k: 6311	n:10000
Cons ci ratio: 1.697625e-02	ci left: 8.348036e-01	ci right 8.491966e-01	k: 8421	n:10000
KS ci ratio: 5.315188e-02	ci left: 3.428323e-01	ci right 3.616539e-01	k: 3522	n:10000
DPY19L3   10000 perm   2 sec   (5407 perm/sec)   p_kst 3.522000e-01   p_cons 8.421000e-01   p_joint 6.311000e-01

Outputting figure to mutsig2_images.part000000000052/DPY19L3.4_2223_10000_0.3522_0.8421_0.6311.png
                gene_name: DPY19L3
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 67 percent done.
DPYSL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.776168e-02	ci left: 3.927683e-01	ci right 4.120886e-01	k: 4024	n:10000
Cons ci ratio: 7.465850e-02	ci left: 2.079681e-01	ci right 2.241977e-01	k: 2160	n:10000
KS ci ratio: 2.958260e-02	ci left: 6.275869e-01	ci right 6.465332e-01	k: 6371	n:10000
DPYSL4   10000 perm   2 sec   (6551 perm/sec)   p_kst 6.371000e-01   p_cons 2.160000e-01   p_joint 4.024000e-01

Outputting figure to mutsig2_images.part000000000052/DPYSL4.4_1775_10000_0.6371_0.216_0.4024.png
                gene_name: DPYSL4
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 69 percent done.
DNM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.101379e-02	ci left: 9.216228e-01	ci right 9.319269e-01	k: 9269	n:10000
KS ci ratio: 4.031520e-02	ci left: 4.760594e-01	ci right 4.957488e-01	k: 4859	n:10000
DNM2   10000 perm   2 sec   (5686 perm/sec)   p_kst 4.859000e-01   p_cons 9.269000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000052/DNM2.3_2840_10000_0.4859_0.9269_1.png
                gene_name: DNM2
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
DNMT3L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.318688e-02	ci left: 7.320922e-01	ci right 7.493674e-01	k: 7408	n:10000
Cons ci ratio: 5.676458e-02	ci left: 3.136389e-01	ci right 3.320644e-01	k: 3228	n:10000
KS ci ratio: 3.615328e-02	ci left: 5.304715e-01	ci right 5.501050e-01	k: 5403	n:10000
DNMT3L   10000 perm   2 sec   (6331 perm/sec)   p_kst 5.403000e-01   p_cons 3.228000e-01   p_joint 7.408000e-01

Outputting figure to mutsig2_images.part000000000052/DNMT3L.3_1208_10000_0.5403_0.3228_0.7408.png
                gene_name: DNMT3L
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 73 percent done.
DOCK9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.443060e-02	ci left: 8.741858e-01	ci right 8.869915e-01	k: 8807	n:10000
KS ci ratio: 1.571331e-02	ci left: 8.546766e-01	ci right 8.683121e-01	k: 8616	n:10000
DOCK9   10000 perm   2 sec   (4611 perm/sec)   p_kst 8.616000e-01   p_cons 8.807000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000052/DOCK9.3_6625_10000_0.8616_0.8807_1.png
                gene_name: DOCK9
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
DOK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.931186e-02	ci left: 4.886519e-01	ci right 5.083490e-01	k: 4985	n:10000
Cons ci ratio: 1.301967e-02	ci left: 8.946712e-01	ci right 9.064942e-01	k: 9007	n:10000
KS ci ratio: 4.904642e-02	ci left: 3.801249e-01	ci right 3.993394e-01	k: 3897	n:10000
DOK3   10000 perm   2 sec   (6040 perm/sec)   p_kst 3.897000e-01   p_cons 9.007000e-01   p_joint 4.985000e-01

Outputting figure to mutsig2_images.part000000000052/DOK3.3_1867_10000_0.3897_0.9007_0.4985.png
                gene_name: DOK3
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 76 percent done.
DOK6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.643025e-02	ci left: 1.631759e-01	ci right 1.780165e-01	k: 1705	n:10000
Cons ci ratio: 4.462184e-02	ci left: 4.257520e-01	ci right 4.452856e-01	k: 4355	n:10000
KS ci ratio: 1.252558e-01	ci left: 8.358655e-02	ci right 9.485408e-02	k: 891	n:10000
DOK6   10000 perm   2 sec   (6642 perm/sec)   p_kst 8.910000e-02   p_cons 4.355000e-01   p_joint 1.705000e-01

Joint ci ratio: 4.738412e-02	ci left: 2.488711e-01	ci right 2.610002e-01	k: 5098	n:20000
Cons ci ratio: 3.163874e-02	ci left: 4.273157e-01	ci right 4.411034e-01	k: 8684	n:20000
KS ci ratio: 8.715687e-02	ci left: 8.783284e-02	ci right 9.588628e-02	k: 1836	n:20000
DOK6   20000 perm   3 sec   (5843 perm/sec)   p_kst 9.180000e-02   p_cons 4.342000e-01   p_joint 2.549000e-01

Outputting figure to mutsig2_images.part000000000052/DOK6.3_1028_20000_0.0918_0.4342_0.2549.png
                gene_name: DOK6
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.092 
        ci_ks_bounds_left: 0.088 
       ci_ks_bounds_right: 0.096 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 78 percent done.
DPEP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.618745e-02	ci left: 6.822418e-01	ci right 7.004466e-01	k: 6914	n:10000
Cons ci ratio: 6.006440e-02	ci left: 2.896400e-01	ci right 3.076774e-01	k: 2986	n:10000
KS ci ratio: 1.980869e-02	ci left: 7.885747e-01	ci right 8.044522e-01	k: 7966	n:10000
DPEP1   10000 perm   1 sec   (6896 perm/sec)   p_kst 7.966000e-01   p_cons 2.986000e-01   p_joint 6.914000e-01

Outputting figure to mutsig2_images.part000000000052/DPEP1.3_1276_10000_0.7966_0.2986_0.6914.png
                gene_name: DPEP1
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 80 percent done.
DPEP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.246886e-02	ci left: 7.441210e-01	ci right 7.611316e-01	k: 7527	n:10000
Cons ci ratio: 5.506921e-02	ci left: 3.269398e-01	ci right 3.455557e-01	k: 3362	n:10000
KS ci ratio: 2.820218e-02	ci left: 6.495130e-01	ci right 6.681944e-01	k: 6589	n:10000
DPEP2   10000 perm   2 sec   (6379 perm/sec)   p_kst 6.589000e-01   p_cons 3.362000e-01   p_joint 7.527000e-01

Outputting figure to mutsig2_images.part000000000052/DPEP2.3_1501_10000_0.6589_0.3362_0.7527.png
                gene_name: DPEP2
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 82 percent done.
DPYSL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.002348e-02	ci left: 9.338193e-01	ci right 9.433233e-01	k: 9387	n:10000
KS ci ratio: 1.202889e-02	ci left: 9.083336e-01	ci right 9.194239e-01	k: 9140	n:10000
DPYSL3   10000 perm   2 sec   (6251 perm/sec)   p_kst 9.140000e-01   p_cons 9.387000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000052/DPYSL3.3_1769_10000_0.914_0.9387_1.png
                gene_name: DPYSL3
               theta_stop: 0.012 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
DNM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.050197e-02	ci left: 9.280257e-01	ci right 9.379203e-01	k: 9331	n:10000
Cons ci ratio: 2.659312e-02	ci left: 6.755913e-01	ci right 6.939010e-01	k: 6848	n:10000
KS ci ratio: 4.952396e-02	ci left: 3.755471e-01	ci right 3.947199e-01	k: 3851	n:10000
DNM1   10000 perm   2 sec   (6145 perm/sec)   p_kst 3.851000e-01   p_cons 6.848000e-01   p_joint 9.331000e-01

Outputting figure to mutsig2_images.part000000000052/DNM1.2_2704_10000_0.3851_0.6848_0.9331.png
                gene_name: DNM1
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 86 percent done.
DNTT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.450598e-02	ci left: 8.730609e-01	ci right 8.859171e-01	k: 8796	n:10000
Cons ci ratio: 2.560606e-02	ci left: 6.918185e-01	ci right 7.098644e-01	k: 7009	n:10000
KS ci ratio: 1.463571e-02	ci left: 8.711183e-01	ci right 8.840608e-01	k: 8777	n:10000
DNTT   10000 perm   2 sec   (6508 perm/sec)   p_kst 8.777000e-01   p_cons 7.009000e-01   p_joint 8.796000e-01

Outputting figure to mutsig2_images.part000000000052/DNTT.2_1574_10000_0.8777_0.7009_0.8796.png
                gene_name: DNTT
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.89 

Current progress: 88 percent done.
DOK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.795200e-02	ci left: 5.062518e-01	ci right 5.259388e-01	k: 5161	n:10000
Cons ci ratio: 3.271458e-02	ci left: 5.796832e-01	ci right 5.990647e-01	k: 5894	n:10000
KS ci ratio: 1.469819e-01	ci left: 6.150035e-02	ci right 7.135407e-02	k: 663	n:10000
DOK2   10000 perm   1 sec   (6680 perm/sec)   p_kst 6.630000e-02   p_cons 5.894000e-01   p_joint 5.161000e-01

Joint ci ratio: 5.092487e-02	ci left: 2.226958e-01	ci right 2.343832e-01	k: 4570	n:20000
Cons ci ratio: 2.209721e-02	ci left: 6.046039e-01	ci right 6.181637e-01	k: 12228	n:20000
KS ci ratio: 1.048676e-01	ci left: 6.186567e-02	ci right 6.876137e-02	k: 1305	n:20000
DOK2   20000 perm   3 sec   (5946 perm/sec)   p_kst 6.525000e-02   p_cons 6.114000e-01   p_joint 2.285000e-01

Joint ci ratio: 4.363757e-02	ci left: 2.073202e-01	ci right 2.166023e-01	k: 6358	n:30000
Cons ci ratio: 1.787597e-02	ci left: 6.102682e-01	ci right 6.213093e-01	k: 18474	n:30000
KS ci ratio: 8.425248e-02	ci left: 6.445757e-02	ci right 7.015990e-02	k: 2018	n:30000
DOK2   30000 perm   5 sec   (5654 perm/sec)   p_kst 6.726667e-02   p_cons 6.158000e-01   p_joint 2.119333e-01

Outputting figure to mutsig2_images.part000000000052/DOK2.2_1259_30000_0.067267_0.6158_0.21193.png
                gene_name: DOK2
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.067 
        ci_ks_bounds_left: 0.064 
       ci_ks_bounds_right: 0.070 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 90 percent done.
DPF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.466295e-02	ci left: 8.707094e-01	ci right 8.836699e-01	k: 8773	n:10000
Cons ci ratio: 3.047144e-02	ci left: 6.137180e-01	ci right 6.328101e-01	k: 6233	n:10000
KS ci ratio: 1.267434e-01	ci left: 8.174120e-02	ci right 9.290058e-02	k: 872	n:10000
DPF1   10000 perm   1 sec   (6921 perm/sec)   p_kst 8.720000e-02   p_cons 6.233000e-01   p_joint 8.773000e-01

Joint ci ratio: 3.915448e-02	ci left: 3.272640e-01	ci right 3.403843e-01	k: 6676	n:20000
Cons ci ratio: 2.149030e-02	ci left: 6.177962e-01	ci right 6.312676e-01	k: 12491	n:20000
KS ci ratio: 9.171034e-02	ci left: 7.984868e-02	ci right 8.757286e-02	k: 1673	n:20000
DPF1   20000 perm   3 sec   (6068 perm/sec)   p_kst 8.365000e-02   p_cons 6.245500e-01   p_joint 3.338000e-01

Outputting figure to mutsig2_images.part000000000052/DPF1.2_1323_20000_0.08365_0.62455_0.3338.png
                gene_name: DPF1
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.084 
        ci_ks_bounds_left: 0.080 
       ci_ks_bounds_right: 0.088 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 92 percent done.
DPF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.019297e-02	ci left: 7.821871e-01	ci right 7.982435e-01	k: 7903	n:10000
Cons ci ratio: 1.106241e-02	ci left: 9.210038e-01	ci right 9.313463e-01	k: 9263	n:10000
KS ci ratio: 7.997575e-02	ci left: 1.858959e-01	ci right 2.014830e-01	k: 1936	n:10000
DPF2   10000 perm   2 sec   (6636 perm/sec)   p_kst 1.936000e-01   p_cons 9.263000e-01   p_joint 7.903000e-01

Outputting figure to mutsig2_images.part000000000052/DPF2.2_1220_10000_0.1936_0.9263_0.7903.png
                gene_name: DPF2
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 94 percent done.
DPH5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.553281e-02	ci left: 6.930285e-01	ci right 7.110537e-01	k: 7021	n:10000
Cons ci ratio: 1.637888e-02	ci left: 8.442763e-01	ci right 8.583184e-01	k: 8514	n:10000
KS ci ratio: 3.233084e-02	ci left: 5.854025e-01	ci right 6.047421e-01	k: 5951	n:10000
DPH5   10000 perm   1 sec   (6898 perm/sec)   p_kst 5.951000e-01   p_cons 8.514000e-01   p_joint 7.021000e-01

Outputting figure to mutsig2_images.part000000000052/DPH5.2_886_10000_0.5951_0.8514_0.7021.png
                gene_name: DPH5
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 96 percent done.
DPRX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.618587e-01	ci left: 5.090025e-02	ci right 5.996092e-02	k: 553	n:10000
Cons ci ratio: 1.082595e-02	ci left: 9.239968e-01	ci right 9.341516e-01	k: 9292	n:10000
KS ci ratio: 4.809000e-01	ci left: 5.020040e-03	ci right 8.277383e-03	k: 65	n:10000
DPRX   10000 perm   1 sec   (7394 perm/sec)   p_kst 6.500000e-03   p_cons 9.292000e-01   p_joint 5.530000e-02

Joint ci ratio: 5.389127e-02	ci left: 2.035311e-01	ci right 2.148536e-01	k: 4183	n:20000
Cons ci ratio: 7.600740e-03	ci left: 9.264783e-01	ci right 9.335960e-01	k: 18602	n:20000
KS ci ratio: 3.349842e-01	ci left: 5.662386e-03	ci right 7.984485e-03	k: 135	n:20000
DPRX   20000 perm   3 sec   (6465 perm/sec)   p_kst 6.750000e-03   p_cons 9.301000e-01   p_joint 2.091500e-01

Joint ci ratio: 6.982547e-02	ci left: 9.173749e-02	ci right 9.840783e-02	k: 2851	n:30000
Cons ci ratio: 6.171992e-03	ci left: 9.278695e-01	ci right 9.336467e-01	k: 27924	n:30000
KS ci ratio: 2.762558e-01	ci left: 5.746141e-03	ci right 7.617986e-03	k: 199	n:30000
DPRX   30000 perm   5 sec   (6131 perm/sec)   p_kst 6.633333e-03   p_cons 9.308000e-01   p_joint 9.503333e-02

Joint ci ratio: 6.195532e-02	ci left: 8.814944e-02	ci right 9.381010e-02	k: 3638	n:40000
Cons ci ratio: 5.320984e-03	ci left: 9.288535e-01	ci right 9.338337e-01	k: 37255	n:40000
KS ci ratio: 2.355680e-01	ci left: 6.065168e-03	ci right 7.707648e-03	k: 274	n:40000
DPRX   40000 perm   7 sec   (5917 perm/sec)   p_kst 6.850000e-03   p_cons 9.313750e-01   p_joint 9.095000e-02

Joint ci ratio: 5.850064e-02	ci left: 7.998436e-02	ci right 8.482426e-02	k: 4119	n:50000
Cons ci ratio: 4.713354e-03	ci left: 9.303672e-01	ci right 9.347824e-01	k: 46630	n:50000
KS ci ratio: 2.157326e-01	ci left: 5.852246e-03	ci right 7.285946e-03	k: 327	n:50000
DPRX   50000 perm   9 sec   (5746 perm/sec)   p_kst 6.540000e-03   p_cons 9.326000e-01   p_joint 8.238000e-02

Joint ci ratio: 3.409921e-02	ci left: 1.774132e-01	ci right 1.835844e-01	k: 10829	n:60000
Cons ci ratio: 4.274023e-03	ci left: 9.314094e-01	ci right 9.354152e-01	k: 56006	n:60000
KS ci ratio: 1.973404e-01	ci left: 5.888473e-03	ci right 7.193280e-03	k: 391	n:60000
DPRX   60000 perm   11 sec   (5589 perm/sec)   p_kst 6.516667e-03   p_cons 9.334333e-01   p_joint 1.804833e-01

Joint ci ratio: 3.060573e-02	ci left: 1.869434e-01	ci right 1.927681e-01	k: 13289	n:70000
Cons ci ratio: 3.966164e-03	ci left: 9.312674e-01	ci right 9.349823e-01	k: 65320	n:70000
KS ci ratio: 1.839887e-01	ci left: 5.849915e-03	ci right 7.048692e-03	k: 450	n:70000
DPRX   70000 perm   13 sec   (5448 perm/sec)   p_kst 6.428571e-03   p_cons 9.331429e-01   p_joint 1.898429e-01

Joint ci ratio: 2.869503e-02	ci left: 1.864288e-01	ci right 1.918687e-01	k: 15131	n:80000
Cons ci ratio: 3.697480e-03	ci left: 9.318147e-01	ci right 9.352788e-01	k: 74685	n:80000
KS ci ratio: 1.716753e-01	ci left: 5.918949e-03	ci right 7.042291e-03	k: 517	n:80000
DPRX   80000 perm   15 sec   (5318 perm/sec)   p_kst 6.462500e-03   p_cons 9.335625e-01   p_joint 1.891375e-01

Joint ci ratio: 3.463790e-02	ci left: 1.224158e-01	ci right 1.267418e-01	k: 11211	n:90000
Cons ci ratio: 3.482438e-03	ci left: 9.320437e-01	ci right 9.353061e-01	k: 84032	n:90000
KS ci ratio: 1.616827e-01	ci left: 5.964062e-03	ci right 7.023679e-03	k: 583	n:90000
DPRX   90000 perm   17 sec   (5198 perm/sec)   p_kst 6.477778e-03   p_cons 9.336889e-01   p_joint 1.245667e-01

Joint ci ratio: 3.285405e-02	ci left: 1.225689e-01	ci right 1.266729e-01	k: 12461	n:100000
Cons ci ratio: 3.299678e-03	ci left: 9.322818e-01	ci right 9.353730e-01	k: 93384	n:100000
KS ci ratio: 1.543329e-01	ci left: 5.915113e-03	ci right 6.913840e-03	k: 640	n:100000
DPRX   100000 perm   20 sec   (5086 perm/sec)   p_kst 6.400000e-03   p_cons 9.338400e-01   p_joint 1.246100e-01

Joint ci ratio: 3.132408e-02	ci left: 1.226717e-01	ci right 1.265845e-01	k: 13708	n:110000
Cons ci ratio: 3.154520e-03	ci left: 9.320208e-01	ci right 9.349745e-01	k: 102686	n:110000
KS ci ratio: 1.468471e-01	ci left: 5.963536e-03	ci right 6.917313e-03	k: 707	n:110000
DPRX   110000 perm   22 sec   (4975 perm/sec)   p_kst 6.427273e-03   p_cons 9.335091e-01   p_joint 1.246182e-01

Joint ci ratio: 2.992345e-02	ci left: 1.232414e-01	ci right 1.269934e-01	k: 15013	n:120000
Cons ci ratio: 3.025293e-03	ci left: 9.318737e-01	ci right 9.347053e-01	k: 111996	n:120000
KS ci ratio: 1.411820e-01	ci left: 5.932488e-03	ci right 6.841614e-03	k: 765	n:120000
DPRX   120000 perm   25 sec   (4868 perm/sec)   p_kst 6.375000e-03   p_cons 9.333000e-01   p_joint 1.251083e-01

Joint ci ratio: 2.248912e-02	ci left: 1.873038e-01	ci right 1.915716e-01	k: 24626	n:130000
Cons ci ratio: 2.911443e-03	ci left: 9.317205e-01	ci right 9.344447e-01	k: 121302	n:130000
KS ci ratio: 1.351389e-01	ci left: 5.996011e-03	ci right 6.872378e-03	k: 835	n:130000
DPRX   130000 perm   27 sec   (4769 perm/sec)   p_kst 6.423077e-03   p_cons 9.330923e-01   p_joint 1.894308e-01

Joint ci ratio: 2.163302e-02	ci left: 1.879195e-01	ci right 1.920363e-01	k: 26596	n:140000
Cons ci ratio: 2.807281e-03	ci left: 9.316922e-01	ci right 9.343184e-01	k: 130622	n:140000
KS ci ratio: 1.289539e-01	ci left: 6.134125e-03	ci right 6.986506e-03	k: 917	n:140000
DPRX   140000 perm   30 sec   (4672 perm/sec)   p_kst 6.550000e-03   p_cons 9.330143e-01   p_joint 1.899714e-01

Joint ci ratio: 2.090392e-02	ci left: 1.879244e-01	ci right 1.919009e-01	k: 28486	n:150000
Cons ci ratio: 2.703561e-03	ci left: 9.321332e-01	ci right 9.346633e-01	k: 140011	n:150000
KS ci ratio: 1.251314e-01	ci left: 6.093099e-03	ci right 6.912819e-03	k: 974	n:150000
DPRX   150000 perm   33 sec   (4584 perm/sec)   p_kst 6.493333e-03   p_cons 9.334067e-01   p_joint 1.899067e-01

Joint ci ratio: 2.068033e-02	ci left: 1.814815e-01	ci right 1.852800e-01	k: 29340	n:160000
Cons ci ratio: 2.617846e-03	ci left: 9.321673e-01	ci right 9.346169e-01	k: 149344	n:160000
KS ci ratio: 1.221670e-01	ci left: 6.002984e-03	ci right 6.790063e-03	k: 1022	n:160000
DPRX   160000 perm   36 sec   (4500 perm/sec)   p_kst 6.387500e-03   p_cons 9.334000e-01   p_joint 1.833750e-01

Joint ci ratio: 2.556063e-02	ci left: 1.199797e-01	ci right 1.230920e-01	k: 20660	n:170000
Cons ci ratio: 2.537756e-03	ci left: 9.322993e-01	ci right 9.346741e-01	k: 158694	n:170000
KS ci ratio: 1.184612e-01	ci left: 6.020717e-03	ci right 6.784498e-03	k: 1087	n:170000
DPRX   170000 perm   38 sec   (4420 perm/sec)   p_kst 6.394118e-03   p_cons 9.334941e-01   p_joint 1.215294e-01

Joint ci ratio: 2.443056e-02	ci left: 1.236026e-01	ci right 1.266651e-01	k: 22523	n:180000
Cons ci ratio: 2.461055e-03	ci left: 9.325968e-01	ci right 9.349003e-01	k: 168076	n:180000
KS ci ratio: 1.151236e-01	ci left: 6.031403e-03	ci right 6.773518e-03	k: 1151	n:180000
DPRX   180000 perm   41 sec   (4343 perm/sec)   p_kst 6.394444e-03   p_cons 9.337556e-01   p_joint 1.251278e-01

Joint ci ratio: 1.716153e-02	ci left: 2.135900e-01	ci right 2.172924e-01	k: 40933	n:190000
Cons ci ratio: 2.398421e-03	ci left: 9.324712e-01	ci right 9.347155e-01	k: 177384	n:190000
KS ci ratio: 1.116840e-01	ci left: 6.082169e-03	ci right 6.806698e-03	k: 1223	n:190000
DPRX   190000 perm   45 sec   (4269 perm/sec)   p_kst 6.436842e-03   p_cons 9.336000e-01   p_joint 2.154368e-01

Joint ci ratio: 1.674518e-02	ci left: 2.132710e-01	ci right 2.168773e-01	k: 43014	n:200000
Cons ci ratio: 2.336557e-03	ci left: 9.325605e-01	ci right 9.347469e-01	k: 186732	n:200000
KS ci ratio: 1.090018e-01	ci left: 6.074642e-03	ci right 6.779779e-03	k: 1284	n:200000
DPRX   200000 perm   48 sec   (4199 perm/sec)   p_kst 6.420000e-03   p_cons 9.336600e-01   p_joint 2.150700e-01

Joint ci ratio: 1.766726e-02	ci left: 1.882291e-01	ci right 1.915890e-01	k: 39880	n:210000
Cons ci ratio: 2.276788e-03	ci left: 9.327762e-01	ci right 9.349070e-01	k: 196108	n:210000
KS ci ratio: 1.063452e-01	ci left: 6.086563e-03	ci right 6.774786e-03	k: 1349	n:210000
DPRX   210000 perm   51 sec   (4133 perm/sec)   p_kst 6.423810e-03   p_cons 9.338476e-01   p_joint 1.899048e-01

Joint ci ratio: 2.210164e-02	ci left: 1.237157e-01	ci right 1.264851e-01	k: 27521	n:220000
Cons ci ratio: 2.222513e-03	ci left: 9.329087e-01	ci right 9.349889e-01	k: 205470	n:220000
KS ci ratio: 1.037631e-01	ci left: 6.110875e-03	ci right 6.784047e-03	k: 1417	n:220000
DPRX   220000 perm   54 sec   (4067 perm/sec)   p_kst 6.440909e-03   p_cons 9.339545e-01   p_joint 1.250955e-01

Joint ci ratio: 1.689364e-02	ci left: 1.880865e-01	ci right 1.912953e-01	k: 43628	n:230000
Cons ci ratio: 2.173393e-03	ci left: 9.329470e-01	ci right 9.349812e-01	k: 214813	n:230000
KS ci ratio: 1.010528e-01	ci left: 6.171402e-03	ci right 6.832431e-03	k: 1494	n:230000
DPRX   230000 perm   57 sec   (4003 perm/sec)   p_kst 6.495652e-03   p_cons 9.339696e-01   p_joint 1.896870e-01

Joint ci ratio: 2.118411e-02	ci left: 1.235342e-01	ci right 1.261832e-01	k: 29965	n:240000
Cons ci ratio: 2.121853e-03	ci left: 9.333056e-01	ci right 9.352922e-01	k: 224233	n:240000
KS ci ratio: 9.908513e-02	ci left: 6.158002e-03	ci right 6.804004e-03	k: 1554	n:240000
DPRX   240000 perm   61 sec   (3942 perm/sec)   p_kst 6.475000e-03   p_cons 9.343042e-01   p_joint 1.248542e-01

Outputting figure to mutsig2_images.part000000000052/DPRX.2_588_240000_0.006475_0.9343_0.12485.png
                gene_name: DPRX
               theta_stop: 0.099 
                    nperm: 240000 
                     p_ks: 0.0065 
        ci_ks_bounds_left: 0.0062 
       ci_ks_bounds_right: 0.0068 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 98 percent done.
DPY19L4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.555722e-02	ci left: 6.926251e-01	ci right 7.106573e-01	k: 7017	n:10000
Cons ci ratio: 1.125939e-01	ci left: 1.019814e-01	ci right 1.142479e-01	k: 1080	n:10000
KS ci ratio: 3.016084e-02	ci left: 6.185410e-01	ci right 6.375843e-01	k: 6281	n:10000
DPY19L4   10000 perm   2 sec   (6199 perm/sec)   p_kst 6.281000e-01   p_cons 1.080000e-01   p_joint 7.017000e-01

Joint ci ratio: 3.035039e-03	ci left: 9.866053e-01	ci right 9.896503e-01	k: 19764	n:20000
Cons ci ratio: 8.001216e-02	ci left: 1.028466e-01	ci right 1.114680e-01	k: 2142	n:20000
KS ci ratio: 2.139876e-02	ci left: 6.198031e-01	ci right 6.332601e-01	k: 12531	n:20000
DPY19L4   20000 perm   4 sec   (5474 perm/sec)   p_kst 6.265500e-01   p_cons 1.071000e-01   p_joint 9.882000e-01

Outputting figure to mutsig2_images.part000000000052/DPY19L4.2_2248_20000_0.62655_0.1071_0.9882.png
                gene_name: DPY19L4
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000052
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 52 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1647>
Subject: Job 8004031: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1647>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000053> was used as the working directory.
Started at Sun Nov 11 15:05:21 2012
Results reported at Sun Nov 11 15:17:44 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000053.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000053.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 53  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000053.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    780.28 sec.
    Max Memory :      4798 MB
    Max Swap   :      7133 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
53
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 53
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 53: processing genes 4705 - 4795
Calculating significance of each gene.
Using projection method.
4705	DRD2	1.347311e-01
4706	DRD3	6.800726e-01
4707	DRD4	4.630579e-01
4708	DRD5	1
4709	DRG1	8.131052e-01
4710	DRG2	1
4711	DRGX	2.150224e-01
4712	DRP2	1.442368e-01
4713	DSC1	6.578897e-02
4714	DSC2	1
4715	DSC3	9.510288e-01
4716	DSCAM	9.995507e-01
4717	DSCAML1	9.975110e-01
4718	DSCC1	1
4719	DSCR3	1
4720	DSCR4	1.700316e-01
4721	DSCR6	1
4722	DSE	4.492539e-01
4723	DSEL	8.195344e-03
4724	DSG1	3.007482e-02
4725	DSG2	7.294843e-01
4726	DSG3	6.457147e-01
4727	DSG4	6.804240e-01
4728	DSN1	5.967094e-01
4729	DSP	9.999780e-01
4730	DSPP	1.665659e-01
4731	DST	1.000000e+00
4732	DSTN	2.707134e-02
4733	DSTYK	8.262972e-01
4734	DTD1	5.526148e-01
4735	DTL	4.989714e-01
4736	DTNA	1.025996e-01
4737	DTNB	9.266709e-01
4738	DTNBP1	5.147029e-01
4739	DTWD1	1
4740	DTWD2	1
4741	DTX1	1
4742	DTX2	8.477889e-01
4743	DTX3	2.423918e-01
4744	DTX3L	1
4745	DTX4	5.526200e-01
4746	DTYMK	4.900494e-01
4747	DULLARD	1
4748	DUOX1	7.634307e-01
4749	DUOX2	7.989148e-01
4750	DUOXA1	1
4751	DUOXA2	1
4752	DUPD1	1.481509e-01
4753	DUS1L	7.201744e-01
4754	DUS2L	3.364897e-01
4755	DUS3L	4.184566e-01
4756	DUS4L	1
4757	DUSP1	1
4758	DUSP10	1.835552e-01
4759	DUSP11	1
4760	DUSP12	4.752745e-01
4761	DUSP13	6.854801e-01
4762	DUSP14	1
4763	DUSP15	3.628494e-01
4764	DUSP16	7.764431e-01
4765	DUSP18	1
4766	DUSP19	1.162179e-01
4767	DUSP2	1
4768	DUSP21	5.921703e-01
4769	DUSP22	9.782565e-02
4770	DUSP23	1
4771	DUSP26	1
4772	DUSP27	9.717363e-01
4773	DUSP28	1
4774	DUSP3	1
4775	DUSP4	4.709557e-01
4776	DUSP5	5.848055e-03
4777	DUSP6	4.453080e-01
4778	DUSP7	7.073384e-01
4779	DUSP8	5.678406e-01
4780	DUSP9	1.551828e-01
4781	DUT	1
4782	DUXA	6.175917e-03
4783	DVL1	4.489442e-01
4784	DVL2	1
4785	DVL3	7.757506e-01
4786	DYDC1	1
4787	DYDC2	3.349379e-01
4788	DYM	1
4789	DYNC1H1	1
4790	DYNC1I1	4.774197e-01
4791	DYNC1I2	7.480787e-01
4792	DYNC1LI1	8.493669e-01
4793	DYNC1LI2	9.101213e-01
4794	DYNC2H1	9.916311e-01
4795	DYNC2LI1	1.816880e-01
Done

Running MutSig 2:
Scatter job 53: processing genes 4705 - 4795
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
DYNC1H1
Processing conservation and coverage...
70% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.472349e-02	ci left: 7.064443e-01	ci right 7.242301e-01	k: 7154	n:10000
KS ci ratio: 1.720538e-02	ci left: 8.311391e-01	ci right 8.456632e-01	k: 8385	n:10000
DYNC1H1   10000 perm   4 sec   (2406 perm/sec)   p_kst 8.385000e-01   p_cons 7.154000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000053/DYNC1H1.20_14253_10000_0.8385_0.7154_1.png
                gene_name: DYNC1H1
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 2 percent done.
DST
Processing conservation and coverage...
48% 97% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.325900e-01	ci left: 1.142242e-02	ci right 1.606722e-02	k: 136	n:10000
Cons ci ratio: 6.346671e-01	ci left: 2.606439e-03	ci right 5.096391e-03	k: 37	n:10000
KS ci ratio: 6.287474e-02	ci left: 2.710168e-01	ci right 2.887116e-01	k: 2798	n:10000
DST   10000 perm   4 sec   (2307 perm/sec)   p_kst 2.798000e-01   p_cons 3.700000e-03   p_joint 1.360000e-02

Joint ci ratio: 1.636116e-01	ci left: 2.561344e-02	ci right 3.022518e-02	k: 557	n:20000
Cons ci ratio: 4.401516e-01	ci left: 3.083972e-03	ci right 4.865021e-03	k: 78	n:20000
KS ci ratio: 4.355601e-02	ci left: 2.819290e-01	ci right 2.945326e-01	k: 5764	n:20000
DST   20000 perm   9 sec   (2157 perm/sec)   p_kst 2.882000e-01   p_cons 3.900000e-03   p_joint 2.785000e-02

Joint ci ratio: 1.549027e-01	ci left: 1.927906e-02	ci right 2.254798e-02	k: 626	n:30000
Cons ci ratio: 3.747790e-01	ci left: 2.954057e-03	ci right 4.344801e-03	k: 108	n:30000
KS ci ratio: 3.543813e-02	ci left: 2.845376e-01	ci right 2.948365e-01	k: 8690	n:30000
DST   30000 perm   14 sec   (2106 perm/sec)   p_kst 2.896667e-01   p_cons 3.600000e-03   p_joint 2.086667e-02

Joint ci ratio: 2.165547e-01	ci left: 7.244952e-03	ci right 9.027564e-03	k: 324	n:40000
Cons ci ratio: 3.319077e-01	ci left: 2.899187e-03	ci right 4.074717e-03	k: 138	n:40000
KS ci ratio: 3.074449e-02	ci left: 2.845109e-01	ci right 2.934197e-01	k: 11558	n:40000
DST   40000 perm   19 sec   (2071 perm/sec)   p_kst 2.889500e-01   p_cons 3.450000e-03   p_joint 8.100000e-03

Joint ci ratio: 2.208747e-01	ci left: 5.568558e-03	ci right 6.969694e-03	k: 312	n:50000
Cons ci ratio: 3.001358e-01	ci left: 2.890289e-03	ci right 3.928687e-03	k: 169	n:50000
KS ci ratio: 2.743696e-02	ci left: 2.859054e-01	ci right 2.938790e-01	k: 14494	n:50000
DST   50000 perm   24 sec   (2048 perm/sec)   p_kst 2.898800e-01   p_cons 3.380000e-03   p_joint 6.240000e-03

Joint ci ratio: 1.656220e-01	ci left: 8.483501e-03	ci right 1.003119e-02	k: 554	n:60000
Cons ci ratio: 2.459261e-01	ci left: 3.698303e-03	ci right 4.750541e-03	k: 252	n:60000
KS ci ratio: 2.510839e-02	ci left: 2.852420e-01	ci right 2.925117e-01	k: 17332	n:60000
DST   60000 perm   30 sec   (2028 perm/sec)   p_kst 2.888667e-01   p_cons 4.200000e-03   p_joint 9.233333e-03

Joint ci ratio: 1.584154e-01	ci left: 7.984152e-03	ci right 9.371322e-03	k: 606	n:70000
Cons ci ratio: 2.254571e-01	ci left: 3.815291e-03	ci right 4.797926e-03	k: 300	n:70000
KS ci ratio: 2.333007e-02	ci left: 2.840350e-01	ci right 2.907540e-01	k: 20117	n:70000
DST   70000 perm   35 sec   (2007 perm/sec)   p_kst 2.873857e-01   p_cons 4.285714e-03   p_joint 8.657143e-03

Joint ci ratio: 1.336584e-01	ci left: 9.926066e-03	ci right 1.135975e-02	k: 850	n:80000
Cons ci ratio: 2.087733e-01	ci left: 3.929461e-03	ci right 4.857046e-03	k: 350	n:80000
KS ci ratio: 2.180000e-02	ci left: 2.846892e-01	ci right 2.909762e-01	k: 23026	n:80000
DST   80000 perm   40 sec   (1986 perm/sec)   p_kst 2.878250e-01   p_cons 4.375000e-03   p_joint 1.062500e-02

Joint ci ratio: 1.059250e-01	ci left: 1.419434e-02	ci right 1.579270e-02	k: 1348	n:90000
Cons ci ratio: 1.945880e-01	ci left: 4.052060e-03	ci right 4.935901e-03	k: 403	n:90000
KS ci ratio: 2.052007e-02	ci left: 2.855303e-01	ci right 2.914612e-01	k: 25964	n:90000
DST   90000 perm   46 sec   (1967 perm/sec)   p_kst 2.884889e-01   p_cons 4.477778e-03   p_joint 1.497778e-02

Joint ci ratio: 1.258419e-01	ci left: 9.004906e-03	ci right 1.022379e-02	k: 960	n:100000
Cons ci ratio: 1.866793e-01	ci left: 3.980140e-03	ci right 4.809011e-03	k: 438	n:100000
KS ci ratio: 1.922471e-02	ci left: 2.908382e-01	ci right 2.964937e-01	k: 29366	n:100000
DST   100000 perm   51 sec   (1950 perm/sec)   p_kst 2.936600e-01   p_cons 4.380000e-03   p_joint 9.600000e-03

Joint ci ratio: 1.201061e-01	ci left: 9.014546e-03	ci right 1.017517e-02	k: 1054	n:110000
Cons ci ratio: 1.763308e-01	ci left: 4.078268e-03	ci right 4.875478e-03	k: 491	n:110000
KS ci ratio: 1.831266e-02	ci left: 2.913630e-01	ci right 2.967570e-01	k: 32346	n:110000
DST   110000 perm   57 sec   (1928 perm/sec)   p_kst 2.940545e-01   p_cons 4.463636e-03   p_joint 9.581818e-03

Joint ci ratio: 1.011611e-01	ci left: 1.173277e-02	ci right 1.299097e-02	k: 1482	n:120000
Cons ci ratio: 1.697360e-01	ci left: 4.049335e-03	ci right 4.808254e-03	k: 530	n:120000
KS ci ratio: 1.752869e-02	ci left: 2.915811e-01	ci right 2.967456e-01	k: 35299	n:120000
DST   120000 perm   63 sec   (1913 perm/sec)   p_kst 2.941583e-01   p_cons 4.416667e-03   p_joint 1.235000e-02

Joint ci ratio: 9.910187e-02	ci left: 1.130260e-02	ci right 1.248855e-02	k: 1545	n:130000
Cons ci ratio: 1.617064e-01	ci left: 4.136027e-03	ci right 4.870960e-03	k: 584	n:130000
KS ci ratio: 1.684404e-02	ci left: 2.916086e-01	ci right 2.965698e-01	k: 38231	n:130000
DST   130000 perm   69 sec   (1898 perm/sec)   p_kst 2.940846e-01   p_cons 4.492308e-03   p_joint 1.188462e-02

Joint ci ratio: 8.647852e-02	ci left: 1.383838e-02	ci right 1.509613e-02	k: 2024	n:140000
Cons ci ratio: 1.557001e-01	ci left: 4.156125e-03	ci right 4.864638e-03	k: 630	n:140000
KS ci ratio: 1.622823e-02	ci left: 2.917781e-01	ci right 2.965590e-01	k: 41183	n:140000
DST   140000 perm   74 sec   (1884 perm/sec)   p_kst 2.941643e-01   p_cons 4.500000e-03   p_joint 1.445714e-02

Joint ci ratio: 9.153063e-02	ci left: 1.152676e-02	ci right 1.263889e-02	k: 1811	n:150000
Cons ci ratio: 1.513308e-01	ci left: 4.116235e-03	ci right 4.796472e-03	k: 667	n:150000
KS ci ratio: 1.602823e-02	ci left: 2.827896e-01	ci right 2.873654e-01	k: 42761	n:150000
DST   150000 perm   80 sec   (1869 perm/sec)   p_kst 2.850733e-01   p_cons 4.446667e-03   p_joint 1.207333e-02

Joint ci ratio: 9.184801e-02	ci left: 1.073896e-02	ci right 1.177886e-02	k: 1800	n:160000
Cons ci ratio: 1.460662e-01	ci left: 4.153834e-03	ci right 4.814320e-03	k: 716	n:160000
KS ci ratio: 1.553184e-02	ci left: 2.825332e-01	ci right 2.869621e-01	k: 45559	n:160000
DST   160000 perm   86 sec   (1851 perm/sec)   p_kst 2.847438e-01   p_cons 4.475000e-03   p_joint 1.125000e-02

Joint ci ratio: 8.952209e-02	ci left: 1.065339e-02	ci right 1.165750e-02	k: 1895	n:170000
Cons ci ratio: 1.425356e-01	ci left: 4.113604e-03	ci right 4.750537e-03	k: 752	n:170000
KS ci ratio: 1.506821e-02	ci left: 2.825967e-01	ci right 2.868930e-01	k: 48406	n:170000
DST   170000 perm   93 sec   (1830 perm/sec)   p_kst 2.847412e-01   p_cons 4.423529e-03   p_joint 1.114706e-02

Joint ci ratio: 7.896593e-02	ci left: 1.297195e-02	ci right 1.404381e-02	k: 2430	n:180000
Cons ci ratio: 1.385454e-01	ci left: 4.120921e-03	ci right 4.739651e-03	k: 796	n:180000
KS ci ratio: 1.463398e-02	ci left: 2.829264e-01	ci right 2.871028e-01	k: 51302	n:180000
DST   180000 perm   99 sec   (1820 perm/sec)   p_kst 2.850111e-01   p_cons 4.422222e-03   p_joint 1.350000e-02

Joint ci ratio: 9.242402e-02	ci left: 8.945258e-03	ci right 9.817178e-03	k: 1781	n:190000
Cons ci ratio: 1.476769e-01	ci left: 3.421822e-03	ci right 3.972438e-03	k: 701	n:190000
KS ci ratio: 1.425364e-02	ci left: 2.826978e-01	ci right 2.867614e-01	k: 54098	n:190000
DST   190000 perm   105 sec   (1809 perm/sec)   p_kst 2.847263e-01   p_cons 3.689474e-03   p_joint 9.373684e-03

Joint ci ratio: 9.056731e-02	ci left: 8.859511e-03	ci right 9.704804e-03	k: 1855	n:200000
Cons ci ratio: 1.425832e-01	ci left: 3.496483e-03	ci right 4.038056e-03	k: 752	n:200000
KS ci ratio: 1.389995e-02	ci left: 2.825383e-01	ci right 2.864980e-01	k: 56903	n:200000
DST   200000 perm   111 sec   (1799 perm/sec)   p_kst 2.845150e-01   p_cons 3.760000e-03   p_joint 9.275000e-03

Joint ci ratio: 8.930979e-02	ci left: 8.684298e-03	ci right 9.500767e-03	k: 1908	n:210000
Cons ci ratio: 1.399173e-01	ci left: 3.463195e-03	ci right 3.988746e-03	k: 781	n:210000
KS ci ratio: 1.356579e-02	ci left: 2.825614e-01	ci right 2.864255e-01	k: 59743	n:210000
DST   210000 perm   117 sec   (1788 perm/sec)   p_kst 2.844905e-01   p_cons 3.719048e-03   p_joint 9.085714e-03

Joint ci ratio: 8.225393e-02	ci left: 9.797683e-03	ci right 1.064257e-02	k: 2247	n:220000
Cons ci ratio: 1.373106e-01	ci left: 3.437408e-03	ci right 3.948533e-03	k: 811	n:220000
KS ci ratio: 1.325477e-02	ci left: 2.825790e-01	ci right 2.863540e-01	k: 62582	n:220000
DST   220000 perm   124 sec   (1778 perm/sec)   p_kst 2.844636e-01   p_cons 3.686364e-03   p_joint 1.021364e-02

Joint ci ratio: 8.472333e-02	ci left: 8.830861e-03	ci right 9.616364e-03	k: 2120	n:230000
Cons ci ratio: 1.344443e-01	ci left: 3.434956e-03	ci right 3.934202e-03	k: 846	n:230000
KS ci ratio: 1.297446e-02	ci left: 2.822748e-01	ci right 2.859654e-01	k: 65347	n:230000
DST   230000 perm   130 sec   (1767 perm/sec)   p_kst 2.841174e-01   p_cons 3.678261e-03   p_joint 9.217391e-03

Joint ci ratio: 7.675883e-02	ci left: 1.033717e-02	ci right 1.116637e-02	k: 2579	n:240000
Cons ci ratio: 1.203637e-01	ci left: 4.135079e-03	ci right 4.668665e-03	k: 1055	n:240000
KS ci ratio: 1.270248e-02	ci left: 2.822755e-01	ci right 2.858881e-01	k: 68179	n:240000
DST   240000 perm   137 sec   (1756 perm/sec)   p_kst 2.840792e-01   p_cons 4.395833e-03   p_joint 1.074583e-02

Joint ci ratio: 7.584531e-02	ci left: 1.017085e-02	ci right 1.097656e-02	k: 2642	n:250000
Cons ci ratio: 1.180397e-01	ci left: 4.132666e-03	ci right 4.654926e-03	k: 1097	n:250000
KS ci ratio: 1.244668e-02	ci left: 2.822848e-01	ci right 2.858242e-01	k: 71013	n:250000
DST   250000 perm   143 sec   (1746 perm/sec)   p_kst 2.840520e-01   p_cons 4.388000e-03   p_joint 1.056800e-02

Joint ci ratio: 7.605008e-02	ci left: 9.730524e-03	ci right 1.050353e-02	k: 2629	n:260000
Cons ci ratio: 1.156926e-01	ci left: 4.141736e-03	ci right 4.654024e-03	k: 1142	n:260000
KS ci ratio: 1.219742e-02	ci left: 2.825705e-01	ci right 2.860420e-01	k: 73919	n:260000
DST   260000 perm   150 sec   (1736 perm/sec)   p_kst 2.843038e-01   p_cons 4.392308e-03   p_joint 1.011154e-02

Joint ci ratio: 7.180217e-02	ci left: 1.052631e-02	ci right 1.131388e-02	k: 2947	n:270000
Cons ci ratio: 1.136724e-01	ci left: 4.135834e-03	ci right 4.637859e-03	k: 1183	n:270000
KS ci ratio: 1.196779e-02	ci left: 2.826582e-01	ci right 2.860650e-01	k: 76777	n:270000
DST   270000 perm   156 sec   (1725 perm/sec)   p_kst 2.843593e-01   p_cons 4.381481e-03   p_joint 1.091481e-02

Joint ci ratio: 7.067430e-02	ci left: 1.048360e-02	ci right 1.125515e-02	k: 3042	n:280000
Cons ci ratio: 1.118463e-01	ci left: 4.123481e-03	ci right 4.615436e-03	k: 1222	n:280000
KS ci ratio: 1.174746e-02	ci left: 2.828507e-01	ci right 2.861966e-01	k: 79666	n:280000
DST   280000 perm   163 sec   (1715 perm/sec)   p_kst 2.845214e-01   p_cons 4.364286e-03   p_joint 1.086429e-02

Joint ci ratio: 6.778666e-02	ci left: 1.101340e-02	ci right 1.178952e-02	k: 3305	n:290000
Cons ci ratio: 1.097132e-01	ci left: 4.142225e-03	ci right 4.626382e-03	k: 1270	n:290000
KS ci ratio: 1.154121e-02	ci left: 2.829479e-01	ci right 2.862358e-01	k: 82531	n:290000
DST   290000 perm   170 sec   (1705 perm/sec)   p_kst 2.845897e-01   p_cons 4.379310e-03   p_joint 1.139655e-02

Joint ci ratio: 6.697492e-02	ci left: 1.091171e-02	ci right 1.167110e-02	k: 3386	n:300000
Cons ci ratio: 1.077797e-01	ci left: 4.153315e-03	ci right 4.629670e-03	k: 1316	n:300000
KS ci ratio: 1.135010e-02	ci left: 2.828726e-01	ci right 2.861049e-01	k: 85346	n:300000
DST   300000 perm   177 sec   (1695 perm/sec)   p_kst 2.844867e-01   p_cons 4.386667e-03   p_joint 1.128667e-02

Joint ci ratio: 6.762603e-02	ci left: 1.035982e-02	ci right 1.108808e-02	k: 3323	n:310000
Cons ci ratio: 1.060232e-01	ci left: 4.157478e-03	ci right 4.626055e-03	k: 1360	n:310000
KS ci ratio: 1.117013e-02	ci left: 2.827318e-01	ci right 2.859109e-01	k: 88139	n:310000
DST   310000 perm   184 sec   (1685 perm/sec)   p_kst 2.843194e-01   p_cons 4.387097e-03   p_joint 1.071935e-02

Joint ci ratio: 6.846440e-02	ci left: 9.793302e-03	ci right 1.049061e-02	k: 3244	n:320000
Cons ci ratio: 1.045368e-01	ci left: 4.146221e-03	ci right 4.606575e-03	k: 1399	n:320000
KS ci ratio: 1.099414e-02	ci left: 2.827593e-01	ci right 2.858883e-01	k: 90983	n:320000
DST   320000 perm   191 sec   (1673 perm/sec)   p_kst 2.843219e-01   p_cons 4.371875e-03   p_joint 1.013750e-02

Joint ci ratio: 6.634978e-02	ci left: 1.011925e-02	ci right 1.081666e-02	k: 3453	n:330000
Cons ci ratio: 1.030753e-01	ci left: 4.138643e-03	ci right 4.591341e-03	k: 1439	n:330000
KS ci ratio: 1.082123e-02	ci left: 2.829731e-01	ci right 2.860549e-01	k: 93889	n:330000
DST   330000 perm   198 sec   (1663 perm/sec)   p_kst 2.845121e-01   p_cons 4.360606e-03   p_joint 1.046364e-02

Joint ci ratio: 6.580419e-02	ci left: 9.989373e-03	ci right 1.067195e-02	k: 3511	n:340000
Cons ci ratio: 1.019853e-01	ci left: 4.105753e-03	ci right 4.549820e-03	k: 1470	n:340000
KS ci ratio: 1.065830e-02	ci left: 2.830954e-01	ci right 2.861318e-01	k: 96768	n:340000
DST   340000 perm   206 sec   (1652 perm/sec)   p_kst 2.846118e-01   p_cons 4.323529e-03   p_joint 1.032647e-02

Joint ci ratio: 6.483281e-02	ci left: 1.000187e-02	ci right 1.067484e-02	k: 3617	n:350000
Cons ci ratio: 1.003603e-01	ci left: 4.122120e-03	ci right 4.560435e-03	k: 1518	n:350000
KS ci ratio: 1.049839e-02	ci left: 2.833708e-01	ci right 2.863642e-01	k: 99703	n:350000
DST   350000 perm   213 sec   (1642 perm/sec)   p_kst 2.848657e-01   p_cons 4.337143e-03   p_joint 1.033429e-02

Joint ci ratio: 6.276360e-02	ci left: 1.038287e-02	ci right 1.105837e-02	k: 3858	n:360000
Cons ci ratio: 9.884232e-02	ci left: 4.134921e-03	ci right 4.567561e-03	k: 1565	n:360000
KS ci ratio: 1.034899e-02	ci left: 2.834925e-01	ci right 2.864443e-01	k: 102588	n:360000
DST   360000 perm   221 sec   (1632 perm/sec)   p_kst 2.849667e-01   p_cons 4.347222e-03   p_joint 1.071667e-02

Outputting figure to mutsig2_images.part000000000053/DST.18_20492_360000_0.28497_0.0043472_0.010717.png
                gene_name: DST
               theta_stop: 0.099 
                    nperm: 360000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.0043 
      ci_cons_bounds_left: 0.0041 
     ci_cons_bounds_right: 0.0046 
                  p_joint: 0.011 
     ci_joint_bounds_left: 0.010 
    ci_joint_bounds_right: 0.011 

Current progress: 4 percent done.
DSCAML1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.286912e-01	ci left: 7.941135e-02	ci right 9.043186e-02	k: 848	n:10000
Cons ci ratio: 8.274164e-02	ci left: 1.756613e-01	ci right 1.909236e-01	k: 1832	n:10000
KS ci ratio: 1.487901e-01	ci left: 6.005239e-02	ci right 6.980294e-02	k: 648	n:10000
DSCAML1   10000 perm   3 sec   (3861 perm/sec)   p_kst 6.480000e-02   p_cons 1.832000e-01   p_joint 8.480000e-02

Joint ci ratio: 8.001216e-02	ci left: 1.028466e-01	ci right 1.114680e-01	k: 2142	n:20000
Cons ci ratio: 5.893157e-02	ci left: 1.757845e-01	ci right 1.865084e-01	k: 3622	n:20000
KS ci ratio: 1.016964e-01	ci left: 6.562284e-02	ci right 7.270304e-02	k: 1382	n:20000
DSCAML1   20000 perm   6 sec   (3575 perm/sec)   p_kst 6.910000e-02   p_cons 1.811000e-01   p_joint 1.071000e-01

Joint ci ratio: 6.078951e-02	ci left: 1.180205e-01	ci right 1.254529e-01	k: 3651	n:30000
Cons ci ratio: 4.835961e-02	ci left: 1.753039e-01	ci right 1.840249e-01	k: 5389	n:30000
KS ci ratio: 8.255541e-02	ci left: 6.700709e-02	ci right 7.280987e-02	k: 2096	n:30000
DSCAML1   30000 perm   9 sec   (3459 perm/sec)   p_kst 6.986667e-02   p_cons 1.796333e-01   p_joint 1.217000e-01

Outputting figure to mutsig2_images.part000000000053/DSCAML1.13_6474_30000_0.069867_0.17963_0.1217.png
                gene_name: DSCAML1
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.070 
        ci_ks_bounds_left: 0.067 
       ci_ks_bounds_right: 0.073 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 6 percent done.
DUSP27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.868369e-02	ci left: 8.071466e-01	ci right 8.224696e-01	k: 8149	n:10000
Cons ci ratio: 3.130776e-02	ci left: 6.008614e-01	ci right 6.200742e-01	k: 6105	n:10000
KS ci ratio: 3.977843e-02	ci left: 4.827546e-01	ci right 5.024497e-01	k: 4926	n:10000
DUSP27   10000 perm   2 sec   (4733 perm/sec)   p_kst 4.926000e-01   p_cons 6.105000e-01   p_joint 8.149000e-01

Outputting figure to mutsig2_images.part000000000053/DUSP27.12_3497_10000_0.4926_0.6105_0.8149.png
                gene_name: DUSP27
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 8 percent done.
DSCAM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.635322e-02	ci left: 6.795209e-01	ci right 6.977691e-01	k: 6887	n:10000
Cons ci ratio: 3.225041e-02	ci left: 5.866068e-01	ci right 6.059371e-01	k: 5963	n:10000
KS ci ratio: 2.931451e-02	ci left: 6.318096e-01	ci right 6.507081e-01	k: 6413	n:10000
DSCAM   10000 perm   2 sec   (4326 perm/sec)   p_kst 6.413000e-01   p_cons 5.963000e-01   p_joint 6.887000e-01

Outputting figure to mutsig2_images.part000000000053/DSCAM.11_6171_10000_0.6413_0.5963_0.6887.png
                gene_name: DSCAM
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 10 percent done.
DSEL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.064893e-02	ci left: 7.745865e-01	ci right 7.908485e-01	k: 7828	n:10000
KS ci ratio: 1.178264e-02	ci left: 9.116264e-01	ci right 9.225292e-01	k: 9172	n:10000
DSEL   10000 perm   2 sec   (4615 perm/sec)   p_kst 9.172000e-01   p_cons 7.828000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000053/DSEL.11_3673_10000_0.9172_0.7828_1.png
                gene_name: DSEL
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 12 percent done.
DSG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.596042e-02	ci left: 2.022494e-01	ci right 2.183197e-01	k: 2102	n:10000
Cons ci ratio: 6.954595e-02	ci left: 2.326438e-01	ci right 2.495073e-01	k: 2410	n:10000
KS ci ratio: 7.747908e-02	ci left: 1.958434e-01	ci right 2.117295e-01	k: 2037	n:10000
DSG1   10000 perm   2 sec   (4776 perm/sec)   p_kst 2.037000e-01   p_cons 2.410000e-01   p_joint 2.102000e-01

Outputting figure to mutsig2_images.part000000000053/DSG1.9_3210_10000_0.2037_0.241_0.2102.png
                gene_name: DSG1
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 14 percent done.
DTNA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.268807e-02	ci left: 2.170439e-01	ci right 2.335164e-01	k: 2252	n:10000
Cons ci ratio: 1.154273e-01	ci left: 9.740099e-02	ci right 1.094311e-01	k: 1033	n:10000
KS ci ratio: 5.095471e-02	ci left: 3.622168e-01	ci right 3.812580e-01	k: 3717	n:10000
DTNA   10000 perm   2 sec   (5009 perm/sec)   p_kst 3.717000e-01   p_cons 1.033000e-01   p_joint 2.252000e-01

Joint ci ratio: 5.145773e-02	ci left: 2.190794e-01	ci right 2.307007e-01	k: 4497	n:20000
Cons ci ratio: 8.217607e-02	ci left: 9.793682e-02	ci right 1.063792e-01	k: 2042	n:20000
KS ci ratio: 3.563633e-02	ci left: 3.701771e-01	ci right 3.836587e-01	k: 7538	n:20000
DTNA   20000 perm   4 sec   (4591 perm/sec)   p_kst 3.769000e-01   p_cons 1.021000e-01   p_joint 2.248500e-01

Outputting figure to mutsig2_images.part000000000053/DTNA.9_2406_20000_0.3769_0.1021_0.22485.png
                gene_name: DTNA
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.098 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 16 percent done.
DYNC2H1
Processing conservation and coverage...
75% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.949659e-02	ci left: 7.937479e-01	ci right 8.094760e-01	k: 8017	n:10000
Cons ci ratio: 4.618837e-03	ci left: 9.839328e-01	ci right 9.885776e-01	k: 9864	n:10000
KS ci ratio: 3.151877e-02	ci left: 5.976484e-01	ci right 6.168891e-01	k: 6073	n:10000
DYNC2H1   10000 perm   3 sec   (3011 perm/sec)   p_kst 6.073000e-01   p_cons 9.864000e-01   p_joint 8.017000e-01

Outputting figure to mutsig2_images.part000000000053/DYNC2H1.9_13305_10000_0.6073_0.9864_0.8017.png
                gene_name: DYNC2H1
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 18 percent done.
DSC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.477448e-02	ci left: 3.293229e-01	ci right 3.479712e-01	k: 3386	n:10000
Cons ci ratio: 6.563685e-02	ci left: 2.541932e-01	ci right 2.715451e-01	k: 2628	n:10000
KS ci ratio: 4.488595e-02	ci left: 4.228604e-01	ci right 4.423788e-01	k: 4326	n:10000
DSC1   10000 perm   2 sec   (5344 perm/sec)   p_kst 4.326000e-01   p_cons 2.628000e-01   p_joint 3.386000e-01

Outputting figure to mutsig2_images.part000000000053/DSC1.8_2789_10000_0.4326_0.2628_0.3386.png
                gene_name: DSC1
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 20 percent done.
DSG4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.793088e-02	ci left: 3.910755e-01	ci right 4.103824e-01	k: 4007	n:10000
Cons ci ratio: 8.664465e-02	ci left: 1.624881e-01	ci right 1.773047e-01	k: 1698	n:10000
KS ci ratio: 3.735622e-02	ci left: 5.141557e-01	ci right 5.338303e-01	k: 5240	n:10000
DSG4   10000 perm   2 sec   (5244 perm/sec)   p_kst 5.240000e-01   p_cons 1.698000e-01   p_joint 4.007000e-01

Outputting figure to mutsig2_images.part000000000053/DSG4.8_3308_10000_0.524_0.1698_0.4007.png
                gene_name: DSG4
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 22 percent done.
DSP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.195184e-02	ci left: 2.769584e-01	ci right 2.947665e-01	k: 2858	n:10000
Cons ci ratio: 1.504835e-02	ci left: 8.648849e-01	ci right 8.780979e-01	k: 8716	n:10000
KS ci ratio: 1.021285e-01	ci left: 1.218044e-01	ci right 1.350129e-01	k: 1283	n:10000
DSP   10000 perm   3 sec   (3768 perm/sec)   p_kst 1.283000e-01   p_cons 8.716000e-01   p_joint 2.858000e-01

Joint ci ratio: 4.387662e-02	ci left: 2.789491e-01	ci right 2.915134e-01	k: 5704	n:20000
Cons ci ratio: 1.073939e-02	ci left: 8.647528e-01	ci right 8.741395e-01	k: 17390	n:20000
KS ci ratio: 7.183240e-02	ci left: 1.249251e-01	ci right 1.342829e-01	k: 2591	n:20000
DSP   20000 perm   6 sec   (3437 perm/sec)   p_kst 1.295500e-01   p_cons 8.695000e-01   p_joint 2.852000e-01

Outputting figure to mutsig2_images.part000000000053/DSP.8_8712_20000_0.12955_0.8695_0.2852.png
                gene_name: DSP
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 24 percent done.
DYNC1I1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.130635e-01	ci left: 1.012015e-01	ci right 1.134283e-01	k: 1072	n:10000
Cons ci ratio: 5.993563e-02	ci left: 2.905320e-01	ci right 3.085849e-01	k: 2995	n:10000
KS ci ratio: 1.077377e-01	ci left: 1.105672e-01	ci right 1.232569e-01	k: 1168	n:10000
DYNC1I1   10000 perm   2 sec   (5687 perm/sec)   p_kst 1.168000e-01   p_cons 2.995000e-01   p_joint 1.072000e-01

Joint ci ratio: 6.246759e-02	ci left: 1.593367e-01	ci right 1.696610e-01	k: 3289	n:20000
Cons ci ratio: 4.242653e-02	ci left: 2.927590e-01	ci right 3.054994e-01	k: 5982	n:20000
KS ci ratio: 7.592629e-02	ci left: 1.131172e-01	ci right 1.220943e-01	k: 2351	n:20000
DYNC1I1   20000 perm   4 sec   (5112 perm/sec)   p_kst 1.175500e-01   p_cons 2.991000e-01   p_joint 1.644500e-01

Outputting figure to mutsig2_images.part000000000053/DYNC1I1.7_2002_20000_0.11755_0.2991_0.16445.png
                gene_name: DYNC1I1
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 27 percent done.
DRP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.089762e-02	ci left: 7.704332e-01	ci right 7.868042e-01	k: 7787	n:10000
Cons ci ratio: 1.631413e-02	ci left: 8.452954e-01	ci right 8.592987e-01	k: 8524	n:10000
KS ci ratio: 2.648848e-02	ci left: 6.773041e-01	ci right 6.955872e-01	k: 6865	n:10000
DRP2   10000 perm   2 sec   (5013 perm/sec)   p_kst 6.865000e-01   p_cons 8.524000e-01   p_joint 7.787000e-01

Outputting figure to mutsig2_images.part000000000053/DRP2.6_2962_10000_0.6865_0.8524_0.7787.png
                gene_name: DRP2
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 29 percent done.
DSC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.535299e-02	ci left: 5.415883e-01	ci right 5.611817e-01	k: 5514	n:10000
Cons ci ratio: 5.617279e-02	ci left: 3.182039e-01	ci right 3.366967e-01	k: 3274	n:10000
KS ci ratio: 5.116258e-02	ci left: 3.603273e-01	ci right 3.793486e-01	k: 3698	n:10000
DSC3   10000 perm   2 sec   (5064 perm/sec)   p_kst 3.698000e-01   p_cons 3.274000e-01   p_joint 5.514000e-01

Outputting figure to mutsig2_images.part000000000053/DSC3.6_2786_10000_0.3698_0.3274_0.5514.png
                gene_name: DSC3
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 31 percent done.
DRD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.373175e-02	ci left: 5.647390e-01	ci right 5.842175e-01	k: 5745	n:10000
Cons ci ratio: 5.384612e-02	ci left: 3.369706e-01	ci right 3.557190e-01	k: 3463	n:10000
KS ci ratio: 2.400250e-02	ci left: 7.184560e-01	ci right 7.360115e-01	k: 7273	n:10000
DRD3   10000 perm   2 sec   (6060 perm/sec)   p_kst 7.273000e-01   p_cons 3.463000e-01   p_joint 5.745000e-01

Outputting figure to mutsig2_images.part000000000053/DRD3.5_1227_10000_0.7273_0.3463_0.5745.png
                gene_name: DRD3
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 33 percent done.
DRD5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.136961e-03	ci left: 9.643613e-01	ci right 9.713627e-01	k: 9680	n:10000
KS ci ratio: 2.397830e-02	ci left: 7.188599e-01	ci right 7.364073e-01	k: 7277	n:10000
DRD5   10000 perm   2 sec   (5964 perm/sec)   p_kst 7.277000e-01   p_cons 9.680000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000053/DRD5.5_1438_10000_0.7277_0.968_1.png
                gene_name: DRD5
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 35 percent done.
DSPP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.867443e-01	ci left: 3.824795e-02	ci right 4.622151e-02	k: 421	n:10000
Cons ci ratio: 2.256183e-01	ci left: 2.598777e-02	ci right 3.269015e-02	k: 292	n:10000
KS ci ratio: 1.639045e-01	ci left: 4.965055e-02	ci right 5.861142e-02	k: 540	n:10000
DSPP   10000 perm   2 sec   (4754 perm/sec)   p_kst 5.400000e-02   p_cons 2.920000e-02   p_joint 4.210000e-02

Joint ci ratio: 1.241901e-01	ci left: 4.449603e-02	ci right 5.043643e-02	k: 948	n:20000
Cons ci ratio: 1.561414e-01	ci left: 2.816027e-02	ci right 3.297749e-02	k: 610	n:20000
KS ci ratio: 1.140729e-01	ci left: 5.256132e-02	ci right 5.896860e-02	k: 1114	n:20000
DSPP   20000 perm   5 sec   (4340 perm/sec)   p_kst 5.570000e-02   p_cons 3.050000e-02   p_joint 4.740000e-02

Joint ci ratio: 2.397339e-01	ci left: 7.774275e-03	ci right 9.922465e-03	k: 264	n:30000
Cons ci ratio: 1.184276e-01	ci left: 3.314310e-02	ci right 3.734752e-02	k: 1056	n:30000
KS ci ratio: 9.405248e-02	ci left: 5.215340e-02	ci right 5.733326e-02	k: 1641	n:30000
DSPP   30000 perm   7 sec   (4177 perm/sec)   p_kst 5.470000e-02   p_cons 3.520000e-02   p_joint 8.800000e-03

Joint ci ratio: 2.148943e-01	ci left: 7.363245e-03	ci right 9.159242e-03	k: 329	n:40000
Cons ci ratio: 1.016801e-01	ci left: 3.400054e-02	ci right 3.766724e-02	k: 1432	n:40000
KS ci ratio: 8.274621e-02	ci left: 5.092256e-02	ci right 5.534260e-02	k: 2124	n:40000
DSPP   40000 perm   10 sec   (4070 perm/sec)   p_kst 5.310000e-02   p_cons 3.580000e-02   p_joint 8.225000e-03

Joint ci ratio: 1.371304e-01	ci left: 1.497632e-02	ci right 1.720038e-02	k: 803	n:50000
Cons ci ratio: 9.068996e-02	ci left: 3.438411e-02	ci right 3.767004e-02	k: 1800	n:50000
KS ci ratio: 7.483618e-02	ci left: 5.006994e-02	ci right 5.398228e-02	k: 2600	n:50000
DSPP   50000 perm   13 sec   (3986 perm/sec)   p_kst 5.200000e-02   p_cons 3.600000e-02   p_joint 1.606000e-02

Joint ci ratio: 1.346271e-01	ci left: 1.299456e-02	ci right 1.488622e-02	k: 835	n:60000
Cons ci ratio: 8.355743e-02	ci left: 3.390292e-02	ci right 3.687557e-02	k: 2122	n:60000
KS ci ratio: 6.870218e-02	ci left: 4.969575e-02	ci right 5.324779e-02	k: 3087	n:60000
DSPP   60000 perm   15 sec   (3910 perm/sec)   p_kst 5.145000e-02   p_cons 3.536667e-02   p_joint 1.391667e-02

Joint ci ratio: 1.347631e-01	ci left: 1.113747e-02	ci right 1.276051e-02	k: 835	n:70000
Cons ci ratio: 7.721124e-02	ci left: 3.414137e-02	ci right 3.689731e-02	k: 2485	n:70000
KS ci ratio: 6.385546e-02	ci left: 4.945211e-02	ci right 5.272809e-02	k: 3575	n:70000
DSPP   70000 perm   18 sec   (3842 perm/sec)   p_kst 5.107143e-02   p_cons 3.550000e-02   p_joint 1.192857e-02

Joint ci ratio: 1.283515e-01	ci left: 1.078479e-02	ci right 1.227595e-02	k: 921	n:80000
Cons ci ratio: 7.226601e-02	ci left: 3.419153e-02	ci right 3.676730e-02	k: 2837	n:80000
KS ci ratio: 5.950048e-02	ci left: 4.992921e-02	ci right 5.300342e-02	k: 4116	n:80000
DSPP   80000 perm   21 sec   (3782 perm/sec)   p_kst 5.145000e-02   p_cons 3.546250e-02   p_joint 1.151250e-02

Joint ci ratio: 1.095690e-01	ci left: 1.325336e-02	ci right 1.480042e-02	k: 1261	n:90000
Cons ci ratio: 6.767024e-02	ci left: 3.472677e-02	ci right 3.716993e-02	k: 3234	n:90000
KS ci ratio: 5.595528e-02	ci left: 5.026232e-02	ci right 5.316666e-02	k: 4653	n:90000
DSPP   90000 perm   24 sec   (3723 perm/sec)   p_kst 5.170000e-02   p_cons 3.593333e-02   p_joint 1.401111e-02

Joint ci ratio: 1.017329e-01	ci left: 1.388519e-02	ci right 1.538316e-02	k: 1462	n:100000
Cons ci ratio: 6.442524e-02	ci left: 3.454866e-02	ci right 3.685837e-02	k: 3569	n:100000
KS ci ratio: 5.325847e-02	ci left: 5.001970e-02	ci right 5.276640e-02	k: 5138	n:100000
DSPP   100000 perm   27 sec   (3669 perm/sec)   p_kst 5.138000e-02   p_cons 3.569000e-02   p_joint 1.462000e-02

Joint ci ratio: 1.039468e-01	ci left: 1.209974e-02	ci right 1.343522e-02	k: 1403	n:110000
Cons ci ratio: 6.126548e-02	ci left: 3.478142e-02	ci right 3.698859e-02	k: 3946	n:110000
KS ci ratio: 4.999200e-02	ci left: 5.161146e-02	ci right 5.426672e-02	k: 5822	n:110000
DSPP   110000 perm   30 sec   (3617 perm/sec)   p_kst 5.292727e-02   p_cons 3.587273e-02   p_joint 1.275455e-02

Joint ci ratio: 9.522502e-02	ci left: 1.326147e-02	ci right 1.459551e-02	k: 1670	n:120000
Cons ci ratio: 5.884047e-02	ci left: 3.461621e-02	ci right 3.672297e-02	k: 4279	n:120000
KS ci ratio: 4.786914e-02	ci left: 5.165669e-02	ci right 5.419830e-02	k: 6350	n:120000
DSPP   120000 perm   34 sec   (3564 perm/sec)   p_kst 5.291667e-02   p_cons 3.565833e-02   p_joint 1.391667e-02

Outputting figure to mutsig2_images.part000000000053/DSPP.5_3922_120000_0.052917_0.035658_0.013917.png
                gene_name: DSPP
               theta_stop: 0.095 
                    nperm: 120000 
                     p_ks: 0.053 
        ci_ks_bounds_left: 0.052 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.036 
      ci_cons_bounds_left: 0.035 
     ci_cons_bounds_right: 0.037 
                  p_joint: 0.014 
     ci_joint_bounds_left: 0.013 
    ci_joint_bounds_right: 0.015 

Current progress: 37 percent done.
DUOX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.804930e-02	ci left: 8.175101e-01	ci right 8.325001e-01	k: 8251	n:10000
Cons ci ratio: 4.888187e-02	ci left: 3.817174e-01	ci right 4.009460e-01	k: 3913	n:10000
KS ci ratio: 8.477335e-03	ci left: 9.511695e-01	ci right 9.593627e-01	k: 9554	n:10000
DUOX1   10000 perm   2 sec   (4486 perm/sec)   p_kst 9.554000e-01   p_cons 3.913000e-01   p_joint 8.251000e-01

Outputting figure to mutsig2_images.part000000000053/DUOX1.5_4788_10000_0.9554_0.3913_0.8251.png
                gene_name: DUOX1
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 39 percent done.
DUSP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.122974e-02	ci left: 4.648713e-01	ci right 4.845434e-01	k: 4747	n:10000
KS ci ratio: 2.218526e-02	ci left: 7.488743e-01	ci right 7.657756e-01	k: 7574	n:10000
DUSP5   10000 perm   2 sec   (6164 perm/sec)   p_kst 7.574000e-01   p_cons 4.747000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000053/DUSP5.5_1171_10000_0.7574_0.4747_1.png
                gene_name: DUSP5
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 41 percent done.
DRD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.082627e-01	ci left: 1.095910e-01	ci right 1.222338e-01	k: 1158	n:10000
Cons ci ratio: 3.229731e-02	ci left: 5.859043e-01	ci right 6.052400e-01	k: 5956	n:10000
KS ci ratio: 1.851468e-01	ci left: 3.891660e-02	ci right 4.695241e-02	k: 428	n:10000
DRD2   10000 perm   2 sec   (6343 perm/sec)   p_kst 4.280000e-02   p_cons 5.956000e-01   p_joint 1.158000e-01

Joint ci ratio: 9.780136e-02	ci left: 7.070242e-02	ci right 7.802190e-02	k: 1486	n:20000
Cons ci ratio: 2.283417e-02	ci left: 5.888601e-01	ci right 6.025121e-01	k: 11914	n:20000
KS ci ratio: 1.285145e-01	ci left: 4.158670e-02	ci right 4.734668e-02	k: 888	n:20000
DRD2   20000 perm   4 sec   (5656 perm/sec)   p_kst 4.440000e-02   p_cons 5.957000e-01   p_joint 7.430000e-02

Joint ci ratio: 6.994750e-02	ci left: 9.144222e-02	ci right 9.810317e-02	k: 2842	n:30000
Cons ci ratio: 1.860955e-02	ci left: 5.910229e-01	ci right 6.021584e-01	k: 17898	n:30000
KS ci ratio: 1.040978e-01	ci left: 4.277918e-02	ci right 4.750942e-02	k: 1353	n:30000
DRD2   30000 perm   6 sec   (5394 perm/sec)   p_kst 4.510000e-02   p_cons 5.966000e-01   p_joint 9.473333e-02

Joint ci ratio: 6.960017e-02	ci left: 7.091201e-02	ci right 7.605011e-02	k: 2938	n:40000
Cons ci ratio: 1.609808e-02	ci left: 5.923241e-01	ci right 6.019618e-01	k: 23886	n:40000
KS ci ratio: 9.042302e-02	ci left: 4.284229e-02	ci right 4.692411e-02	k: 1794	n:40000
DRD2   40000 perm   8 sec   (5125 perm/sec)   p_kst 4.485000e-02   p_cons 5.971500e-01   p_joint 7.345000e-02

Outputting figure to mutsig2_images.part000000000053/DRD2.4_1360_40000_0.04485_0.59715_0.07345.png
                gene_name: DRD2
               theta_stop: 0.090 
                    nperm: 40000 
                     p_ks: 0.045 
        ci_ks_bounds_left: 0.043 
       ci_ks_bounds_right: 0.047 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.073 
     ci_joint_bounds_left: 0.071 
    ci_joint_bounds_right: 0.076 

Current progress: 43 percent done.
DSE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.108113e-02	ci left: 2.248418e-01	ci right 2.415139e-01	k: 2331	n:10000
Cons ci ratio: 1.613879e-02	ci left: 8.480476e-01	ci right 8.619449e-01	k: 8551	n:10000
KS ci ratio: 1.339316e-01	ci left: 7.359257e-02	ci right 8.425426e-02	k: 788	n:10000
DSE   10000 perm   2 sec   (5325 perm/sec)   p_kst 7.880000e-02   p_cons 8.551000e-01   p_joint 2.331000e-01

Joint ci ratio: 5.907099e-02	ci left: 1.750927e-01	ci right 1.858004e-01	k: 3608	n:20000
Cons ci ratio: 1.148463e-02	ci left: 8.485230e-01	ci right 8.583740e-01	k: 17070	n:20000
KS ci ratio: 9.070869e-02	ci left: 8.151323e-02	ci right 8.930779e-02	k: 1707	n:20000
DSE   20000 perm   4 sec   (4789 perm/sec)   p_kst 8.535000e-02   p_cons 8.535000e-01   p_joint 1.804000e-01

Outputting figure to mutsig2_images.part000000000053/DSE.4_2897_20000_0.08535_0.8535_0.1804.png
                gene_name: DSE
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.085 
        ci_ks_bounds_left: 0.082 
       ci_ks_bounds_right: 0.089 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 45 percent done.
DSG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.905383e-02	ci left: 6.359324e-01	ci right 6.547828e-01	k: 6454	n:10000
Cons ci ratio: 1.798676e-02	ci left: 8.185266e-01	ci right 8.334830e-01	k: 8261	n:10000
KS ci ratio: 5.571689e-02	ci left: 3.217772e-01	ci right 3.403213e-01	k: 3310	n:10000
DSG3   10000 perm   2 sec   (5536 perm/sec)   p_kst 3.310000e-01   p_cons 8.261000e-01   p_joint 6.454000e-01

Outputting figure to mutsig2_images.part000000000053/DSG3.4_3064_10000_0.331_0.8261_0.6454.png
                gene_name: DSG3
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.65 

Current progress: 47 percent done.
DSTYK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.151790e-01	ci left: 9.779067e-02	ci right 1.098412e-01	k: 1037	n:10000
Cons ci ratio: 1.315918e-01	ci left: 7.611299e-02	ci right 8.693227e-02	k: 814	n:10000
KS ci ratio: 8.469983e-02	ci left: 1.688761e-01	ci right 1.839129e-01	k: 1763	n:10000
DSTYK   10000 perm   2 sec   (5397 perm/sec)   p_kst 1.763000e-01   p_cons 8.140000e-02   p_joint 1.037000e-01

Joint ci ratio: 8.133614e-02	ci left: 9.980216e-02	ci right 1.083133e-01	k: 2080	n:20000
Cons ci ratio: 9.765953e-02	ci left: 7.089790e-02	ci right 7.822636e-02	k: 1490	n:20000
KS ci ratio: 5.890179e-02	ci left: 1.759328e-01	ci right 1.866601e-01	k: 3625	n:20000
DSTYK   20000 perm   4 sec   (4847 perm/sec)   p_kst 1.812500e-01   p_cons 7.450000e-02   p_joint 1.040000e-01

Outputting figure to mutsig2_images.part000000000053/DSTYK.4_2842_20000_0.18125_0.0745_0.104.png
                gene_name: DSTYK
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.074 
      ci_cons_bounds_left: 0.071 
     ci_cons_bounds_right: 0.078 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.100 
    ci_joint_bounds_right: 0.11 

Current progress: 49 percent done.
DUOX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.772690e-02	ci left: 6.571620e-01	ci right 6.757409e-01	k: 6665	n:10000
KS ci ratio: 2.734118e-02	ci left: 6.634040e-01	ci right 6.818953e-01	k: 6727	n:10000
DUOX2   10000 perm   2 sec   (4941 perm/sec)   p_kst 6.727000e-01   p_cons 6.665000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000053/DUOX2.4_4779_10000_0.6727_0.6665_1.png
                gene_name: DUOX2
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 51 percent done.
DUSP10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.317620e-02	ci left: 5.728619e-01	ci right 5.922899e-01	k: 5826	n:10000
Cons ci ratio: 2.882575e-02	ci left: 6.395531e-01	ci right 6.583601e-01	k: 6490	n:10000
KS ci ratio: 6.065741e-02	ci left: 2.855770e-01	ci right 3.035428e-01	k: 2945	n:10000
DUSP10   10000 perm   2 sec   (6345 perm/sec)   p_kst 2.945000e-01   p_cons 6.490000e-01   p_joint 5.826000e-01

Outputting figure to mutsig2_images.part000000000053/DUSP10.4_1461_10000_0.2945_0.649_0.5826.png
                gene_name: DUSP10
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 53 percent done.
DUXA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.334015e-02	ci left: 5.704549e-01	ci right 5.898984e-01	k: 5802	n:10000
Cons ci ratio: 2.211284e-02	ci left: 7.500881e-01	ci right 7.669611e-01	k: 7586	n:10000
KS ci ratio: 4.783125e-02	ci left: 3.920712e-01	ci right 4.113861e-01	k: 4017	n:10000
DUXA   10000 perm   1 sec   (6767 perm/sec)   p_kst 4.017000e-01   p_cons 7.586000e-01   p_joint 5.802000e-01

Outputting figure to mutsig2_images.part000000000053/DUXA.4_639_10000_0.4017_0.7586_0.5802.png
                gene_name: DUXA
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 55 percent done.
DSG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.611385e-02	ci left: 6.834513e-01	ci right 7.016364e-01	k: 6926	n:10000
Cons ci ratio: 2.378481e-02	ci left: 7.220913e-01	ci right 7.395740e-01	k: 7309	n:10000
KS ci ratio: 3.981027e-02	ci left: 4.823548e-01	ci right 5.020497e-01	k: 4922	n:10000
DSG2   10000 perm   2 sec   (5573 perm/sec)   p_kst 4.922000e-01   p_cons 7.309000e-01   p_joint 6.926000e-01

Outputting figure to mutsig2_images.part000000000053/DSG2.3_3417_10000_0.4922_0.7309_0.6926.png
                gene_name: DSG2
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 57 percent done.
DSTN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.528286e-02	ci left: 6.971632e-01	ci right 7.151166e-01	k: 7062	n:10000
Cons ci ratio: 3.571168e-02	ci left: 5.365801e-01	ci right 5.561928e-01	k: 5464	n:10000
KS ci ratio: 4.751436e-02	ci left: 3.952579e-01	ci right 4.145975e-01	k: 4049	n:10000
DSTN   10000 perm   1 sec   (6719 perm/sec)   p_kst 4.049000e-01   p_cons 5.464000e-01   p_joint 7.062000e-01

Outputting figure to mutsig2_images.part000000000053/DSTN.3_514_10000_0.4049_0.5464_0.7062.png
                gene_name: DSTN
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 59 percent done.
DTL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.857317e-02	ci left: 6.435768e-01	ci right 6.623341e-01	k: 6530	n:10000
KS ci ratio: 2.589946e-02	ci left: 6.869792e-01	ci right 7.051065e-01	k: 6961	n:10000
DTL   10000 perm   2 sec   (6017 perm/sec)   p_kst 6.961000e-01   p_cons 6.530000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000053/DTL.3_2253_10000_0.6961_0.653_1.png
                gene_name: DTL
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 61 percent done.
DTX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.386991e-02	ci left: 3.367719e-01	ci right 3.555178e-01	k: 3461	n:10000
Cons ci ratio: 9.237174e-02	ci left: 1.455058e-01	ci right 1.596972e-01	k: 1525	n:10000
KS ci ratio: 3.752127e-02	ci left: 5.119543e-01	ci right 5.316330e-01	k: 5218	n:10000
DTX2   10000 perm   2 sec   (5995 perm/sec)   p_kst 5.218000e-01   p_cons 1.525000e-01   p_joint 3.461000e-01

Outputting figure to mutsig2_images.part000000000053/DTX2.3_1905_10000_0.5218_0.1525_0.3461.png
                gene_name: DTX2
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 63 percent done.
DTX3L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.441419e-02	ci left: 7.115912e-01	ci right 7.292802e-01	k: 7205	n:10000
KS ci ratio: 1.482583e-02	ci left: 8.682565e-01	ci right 8.813243e-01	k: 8749	n:10000
DTX3L   10000 perm   2 sec   (5939 perm/sec)   p_kst 8.749000e-01   p_cons 7.205000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000053/DTX3L.3_2243_10000_0.8749_0.7205_1.png
                gene_name: DTX3L
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
DUS2L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.905330e-02	ci left: 4.919509e-01	ci right 5.116480e-01	k: 5018	n:10000
Cons ci ratio: 8.467069e-02	ci left: 1.689744e-01	ci right 1.840145e-01	k: 1764	n:10000
KS ci ratio: 2.884472e-02	ci left: 6.392513e-01	ci right 6.580620e-01	k: 6487	n:10000
DUS2L   10000 perm   2 sec   (6149 perm/sec)   p_kst 6.487000e-01   p_cons 1.764000e-01   p_joint 5.018000e-01

Outputting figure to mutsig2_images.part000000000053/DUS2L.3_1542_10000_0.6487_0.1764_0.5018.png
                gene_name: DUS2L
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 67 percent done.
DUS3L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.712913e-02	ci left: 8.323605e-01	ci right 8.468411e-01	k: 8397	n:10000
KS ci ratio: 7.551511e-03	ci left: 9.604756e-01	ci right 9.678508e-01	k: 9643	n:10000
DUS3L   10000 perm   2 sec   (5967 perm/sec)   p_kst 9.643000e-01   p_cons 8.397000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000053/DUS3L.3_2005_10000_0.9643_0.8397_1.png
                gene_name: DUS3L
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 69 percent done.
DVL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.120649e-02	ci left: 7.652685e-01	ci right 7.817719e-01	k: 7736	n:10000
KS ci ratio: 1.296871e-02	ci left: 8.953894e-01	ci right 9.071756e-01	k: 9014	n:10000
DVL1   10000 perm   2 sec   (5938 perm/sec)   p_kst 9.014000e-01   p_cons 7.736000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000053/DVL1.3_2073_10000_0.9014_0.7736_1.png
                gene_name: DVL1
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
DYNC2LI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.143806e-02	ci left: 3.578414e-01	ci right 3.768359e-01	k: 3673	n:10000
Cons ci ratio: 1.555655e-01	ci left: 5.503869e-02	ci right 6.441983e-02	k: 596	n:10000
KS ci ratio: 2.837802e-02	ci left: 6.466956e-01	ci right 6.654134e-01	k: 6561	n:10000
DYNC2LI1   10000 perm   2 sec   (6238 perm/sec)   p_kst 6.561000e-01   p_cons 5.960000e-02   p_joint 3.673000e-01

Joint ci ratio: 4.819595e-02	ci left: 2.425228e-01	ci right 2.545504e-01	k: 4970	n:20000
Cons ci ratio: 1.055174e-01	ci left: 6.113414e-02	ci right 6.799312e-02	k: 1290	n:20000
KS ci ratio: 2.005154e-02	ci left: 6.498211e-01	ci right 6.630334e-01	k: 13129	n:20000
DYNC2LI1   20000 perm   4 sec   (5536 perm/sec)   p_kst 6.564500e-01   p_cons 6.450000e-02   p_joint 2.485000e-01

Joint ci ratio: 3.784049e-02	ci left: 2.584552e-01	ci right 2.684573e-01	k: 7903	n:30000
Cons ci ratio: 9.148691e-02	ci left: 5.502246e-02	ci right 6.033028e-02	k: 1729	n:30000
KS ci ratio: 1.638131e-02	ci left: 6.507937e-01	ci right 6.615761e-01	k: 19686	n:30000
DYNC2LI1   30000 perm   6 sec   (5276 perm/sec)   p_kst 6.562000e-01   p_cons 5.763333e-02   p_joint 2.634333e-01

Outputting figure to mutsig2_images.part000000000053/DYNC2LI1.3_1219_30000_0.6562_0.057633_0.26343.png
                gene_name: DYNC2LI1
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.058 
      ci_cons_bounds_left: 0.055 
     ci_cons_bounds_right: 0.060 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 73 percent done.
DRGX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.892304e-02	ci left: 2.976695e-01	ci right 3.158432e-01	k: 3067	n:10000
Cons ci ratio: 3.829530e-02	ci left: 5.017506e-01	ci right 5.214426e-01	k: 5116	n:10000
KS ci ratio: 6.985136e-02	ci left: 2.310633e-01	ci right 2.478887e-01	k: 2394	n:10000
DRGX   10000 perm   1 sec   (6952 perm/sec)   p_kst 2.394000e-01   p_cons 5.116000e-01   p_joint 3.067000e-01

Outputting figure to mutsig2_images.part000000000053/DRGX.2_830_10000_0.2394_0.5116_0.3067.png
                gene_name: DRGX
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 76 percent done.
DTNBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.571011e-01	ci left: 5.637697e-03	ci right 9.058734e-03	k: 72	n:10000
Cons ci ratio: 6.647702e-02	ci left: 2.493471e-01	ci right 2.665941e-01	k: 2579	n:10000
KS ci ratio: 3.861344e-01	ci left: 8.233934e-03	ci right 1.225906e-02	k: 101	n:10000
DTNBP1   10000 perm   1 sec   (6703 perm/sec)   p_kst 1.010000e-02   p_cons 2.579000e-01   p_joint 7.200000e-03

Joint ci ratio: 2.504519e-01	ci left: 1.058411e-02	ci right 1.366018e-02	k: 241	n:20000
Cons ci ratio: 4.770430e-02	ci left: 2.463415e-01	ci right 2.584306e-01	k: 5047	n:20000
KS ci ratio: 2.860817e-01	ci left: 7.969983e-03	ci right 1.067556e-02	k: 185	n:20000
DTNBP1   20000 perm   3 sec   (5928 perm/sec)   p_kst 9.250000e-03   p_cons 2.523500e-01   p_joint 1.205000e-02

Joint ci ratio: 1.987540e-01	ci left: 1.152696e-02	ci right 1.410200e-02	k: 383	n:30000
Cons ci ratio: 3.906090e-02	ci left: 2.463992e-01	ci right 2.562490e-01	k: 7539	n:30000
KS ci ratio: 2.298730e-01	ci left: 8.496207e-03	ci right 1.073364e-02	k: 287	n:30000
DTNBP1   30000 perm   5 sec   (5578 perm/sec)   p_kst 9.566667e-03   p_cons 2.513000e-01   p_joint 1.276667e-02

Joint ci ratio: 1.736796e-01	ci left: 1.148207e-02	ci right 1.368954e-02	k: 502	n:40000
Cons ci ratio: 3.377468e-02	ci left: 2.476515e-01	ci right 2.561846e-01	k: 10076	n:40000
KS ci ratio: 2.012037e-01	ci left: 8.453845e-03	ci right 1.036839e-02	k: 375	n:40000
DTNBP1   40000 perm   7 sec   (5370 perm/sec)   p_kst 9.375000e-03   p_cons 2.519000e-01   p_joint 1.255000e-02

Joint ci ratio: 1.548151e-01	ci left: 1.167917e-02	ci right 1.365802e-02	k: 632	n:50000
Cons ci ratio: 3.133011e-02	ci left: 2.346903e-01	ci right 2.421801e-01	k: 11921	n:50000
KS ci ratio: 1.823269e-01	ci left: 8.324448e-03	ci right 1.001328e-02	k: 457	n:50000
DTNBP1   50000 perm   10 sec   (5236 perm/sec)   p_kst 9.140000e-03   p_cons 2.384200e-01   p_joint 1.264000e-02

Joint ci ratio: 1.679277e-01	ci left: 8.243851e-03	ci right 9.770876e-03	k: 539	n:60000
Cons ci ratio: 2.854718e-02	ci left: 2.356914e-01	ci right 2.425338e-01	k: 14346	n:60000
KS ci ratio: 1.679277e-01	ci left: 8.243851e-03	ci right 9.770876e-03	k: 539	n:60000
DTNBP1   60000 perm   12 sec   (5112 perm/sec)   p_kst 8.983333e-03   p_cons 2.391000e-01   p_joint 8.983333e-03

Joint ci ratio: 2.700977e-01	ci left: 2.595116e-03	ci right 3.418367e-03	k: 209	n:70000
Cons ci ratio: 2.651197e-02	ci left: 2.348206e-01	ci right 2.411440e-01	k: 16658	n:70000
KS ci ratio: 1.563499e-01	ci left: 8.203793e-03	ci right 9.608798e-03	k: 622	n:70000
DTNBP1   70000 perm   14 sec   (4991 perm/sec)   p_kst 8.885714e-03   p_cons 2.379714e-01   p_joint 2.985714e-03

Joint ci ratio: 1.447218e-01	ci left: 8.429478e-03	ci right 9.756490e-03	k: 726	n:80000
Cons ci ratio: 2.477907e-02	ci left: 2.353261e-01	ci right 2.412429e-01	k: 19062	n:80000
KS ci ratio: 1.447218e-01	ci left: 8.429478e-03	ci right 9.756490e-03	k: 726	n:80000
DTNBP1   80000 perm   16 sec   (4885 perm/sec)   p_kst 9.075000e-03   p_cons 2.382750e-01   p_joint 9.075000e-03

Joint ci ratio: 1.370275e-01	ci left: 8.393311e-03	ci right 9.638645e-03	k: 810	n:90000
Cons ci ratio: 2.335970e-02	ci left: 2.355305e-01	ci right 2.411086e-01	k: 21448	n:90000
KS ci ratio: 1.370275e-01	ci left: 8.393311e-03	ci right 9.638645e-03	k: 810	n:90000
DTNBP1   90000 perm   19 sec   (4789 perm/sec)   p_kst 9.000000e-03   p_cons 2.383111e-01   p_joint 9.000000e-03

Joint ci ratio: 2.219358e-01	ci left: 2.764930e-03	ci right 3.464383e-03	k: 310	n:100000
Cons ci ratio: 2.216598e-02	ci left: 2.355923e-01	ci right 2.408829e-01	k: 23823	n:100000
KS ci ratio: 1.292103e-01	ci left: 8.530401e-03	ci right 9.718333e-03	k: 911	n:100000
DTNBP1   100000 perm   21 sec   (4696 perm/sec)   p_kst 9.110000e-03   p_cons 2.382300e-01   p_joint 3.100000e-03

Joint ci ratio: 2.132077e-01	ci left: 2.737056e-03	ci right 3.398666e-03	k: 336	n:110000
Cons ci ratio: 2.115054e-02	ci left: 2.354405e-01	ci right 2.404824e-01	k: 26175	n:110000
KS ci ratio: 1.240233e-01	ci left: 8.441521e-03	ci right 9.566413e-03	k: 989	n:110000
DTNBP1   110000 perm   24 sec   (4611 perm/sec)   p_kst 8.990909e-03   p_cons 2.379545e-01   p_joint 3.054545e-03

Joint ci ratio: 2.045881e-01	ci left: 2.737996e-03	ci right 3.369732e-03	k: 365	n:120000
Cons ci ratio: 2.026111e-02	ci left: 2.353519e-01	ci right 2.401775e-01	k: 28531	n:120000
KS ci ratio: 1.176490e-01	ci left: 8.627080e-03	ci right 9.713505e-03	k: 1099	n:120000
DTNBP1   120000 perm   27 sec   (4527 perm/sec)   p_kst 9.158333e-03   p_cons 2.377583e-01   p_joint 3.041667e-03

Joint ci ratio: 1.120259e-01	ci left: 8.807776e-03	ci right 9.860439e-03	k: 1212	n:130000
Cons ci ratio: 1.943930e-02	ci left: 2.359477e-01	ci right 2.405870e-01	k: 30974	n:130000
KS ci ratio: 1.120259e-01	ci left: 8.807776e-03	ci right 9.860439e-03	k: 1212	n:130000
DTNBP1   130000 perm   29 sec   (4448 perm/sec)   p_kst 9.323077e-03   p_cons 2.382615e-01   p_joint 9.323077e-03

Joint ci ratio: 1.079220e-01	ci left: 8.831616e-03	ci right 9.846004e-03	k: 1306	n:140000
Cons ci ratio: 1.874793e-02	ci left: 2.357284e-01	ci right 2.401967e-01	k: 33314	n:140000
KS ci ratio: 1.079220e-01	ci left: 8.831616e-03	ci right 9.846004e-03	k: 1306	n:140000
DTNBP1   140000 perm   32 sec   (4373 perm/sec)   p_kst 9.328571e-03   p_cons 2.379571e-01   p_joint 9.328571e-03

Joint ci ratio: 2.335629e-02	ci left: 1.562504e-01	ci right 1.599495e-01	k: 23714	n:150000
Cons ci ratio: 1.811210e-02	ci left: 2.358068e-01	ci right 2.401234e-01	k: 35694	n:150000
KS ci ratio: 1.040885e-01	ci left: 8.878866e-03	ci right 9.860239e-03	k: 1404	n:150000
DTNBP1   150000 perm   35 sec   (4299 perm/sec)   p_kst 9.360000e-03   p_cons 2.379600e-01   p_joint 1.580933e-01

Joint ci ratio: 2.260349e-02	ci left: 1.564398e-01	ci right 1.600225e-01	k: 25316	n:160000
Cons ci ratio: 1.756593e-02	ci left: 2.352794e-01	ci right 2.394551e-01	k: 37978	n:160000
KS ci ratio: 1.000004e-01	ci left: 9.036564e-03	ci right 9.993835e-03	k: 1521	n:160000
DTNBP1   160000 perm   38 sec   (4232 perm/sec)   p_kst 9.506250e-03   p_cons 2.373625e-01   p_joint 1.582250e-01

Joint ci ratio: 2.189444e-02	ci left: 1.569074e-01	ci right 1.603866e-01	k: 26969	n:170000
Cons ci ratio: 1.702919e-02	ci left: 2.356018e-01	ci right 2.396542e-01	k: 40396	n:170000
KS ci ratio: 9.720071e-02	ci left: 9.015616e-03	ci right 9.942404e-03	k: 1610	n:170000
DTNBP1   170000 perm   41 sec   (4171 perm/sec)   p_kst 9.470588e-03   p_cons 2.376235e-01   p_joint 1.586412e-01

Outputting figure to mutsig2_images.part000000000053/DTNBP1.2_1197_170000_0.0094706_0.23762_0.15864.png
                gene_name: DTNBP1
               theta_stop: 0.097 
                    nperm: 170000 
                     p_ks: 0.0095 
        ci_ks_bounds_left: 0.0090 
       ci_ks_bounds_right: 0.0099 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.16 

Current progress: 78 percent done.
DTX3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.588080e-02	ci left: 3.204868e-01	ci right 3.390125e-01	k: 3297	n:10000
Cons ci ratio: 6.773271e-02	ci left: 2.423276e-01	ci right 2.594177e-01	k: 2508	n:10000
KS ci ratio: 4.099902e-02	ci left: 4.676679e-01	ci right 4.873452e-01	k: 4775	n:10000
DTX3   10000 perm   1 sec   (6776 perm/sec)   p_kst 4.775000e-01   p_cons 2.508000e-01   p_joint 3.297000e-01

Outputting figure to mutsig2_images.part000000000053/DTX3.2_1060_10000_0.4775_0.2508_0.3297.png
                gene_name: DTX3
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 80 percent done.
DTX4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.456744e-02	ci left: 4.263503e-01	ci right 4.458869e-01	k: 4361	n:10000
KS ci ratio: 1.490694e-02	ci left: 8.670303e-01	ci right 8.801512e-01	k: 8737	n:10000
DTX4   10000 perm   2 sec   (6312 perm/sec)   p_kst 8.737000e-01   p_cons 4.361000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000053/DTX4.2_1896_10000_0.8737_0.4361_1.png
                gene_name: DTX4
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
DUOXA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.149762e-03	ci left: 9.958378e-01	ci right 9.980570e-01	k: 9971	n:10000
Cons ci ratio: 4.408155e-02	ci left: 4.317357e-01	ci right 4.512984e-01	k: 4415	n:10000
KS ci ratio: 1.349449e-02	ci left: 8.879038e-01	ci right 9.000656e-01	k: 8941	n:10000
DUOXA2   10000 perm   1 sec   (7024 perm/sec)   p_kst 8.941000e-01   p_cons 4.415000e-01   p_joint 9.971000e-01

Outputting figure to mutsig2_images.part000000000053/DUOXA2.2_987_10000_0.8941_0.4415_0.9971.png
                gene_name: DUOXA2
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 1.00 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1.00 

Current progress: 84 percent done.
DUPD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.192926e-02	ci left: 9.096710e-01	ci right 9.206857e-01	k: 9153	n:10000
Cons ci ratio: 4.922212e-02	ci left: 3.784330e-01	ci right 3.976323e-01	k: 3880	n:10000
KS ci ratio: 9.206414e-03	ci left: 9.432583e-01	ci right 9.520786e-01	k: 9478	n:10000
DUPD1   10000 perm   1 sec   (6947 perm/sec)   p_kst 9.478000e-01   p_cons 3.880000e-01   p_joint 9.153000e-01

Outputting figure to mutsig2_images.part000000000053/DUPD1.2_675_10000_0.9478_0.388_0.9153.png
                gene_name: DUPD1
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 86 percent done.
DUSP16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.084238e-02	ci left: 9.237903e-01	ci right 9.339582e-01	k: 9290	n:10000
Cons ci ratio: 2.377877e-02	ci left: 7.221923e-01	ci right 7.396730e-01	k: 7310	n:10000
KS ci ratio: 4.760319e-02	ci left: 3.943616e-01	ci right 4.136943e-01	k: 4040	n:10000
DUSP16   10000 perm   2 sec   (6407 perm/sec)   p_kst 4.040000e-01   p_cons 7.310000e-01   p_joint 9.290000e-01

Outputting figure to mutsig2_images.part000000000053/DUSP16.2_2022_10000_0.404_0.731_0.929.png
                gene_name: DUSP16
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 88 percent done.
DUSP19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.619733e-02	ci left: 8.471301e-01	ci right 8.610629e-01	k: 8542	n:10000
Cons ci ratio: 1.512217e-02	ci left: 8.637614e-01	ci right 8.770220e-01	k: 8705	n:10000
KS ci ratio: 4.509683e-02	ci left: 4.205673e-01	ci right 4.400733e-01	k: 4303	n:10000
DUSP19   10000 perm   1 sec   (6939 perm/sec)   p_kst 4.303000e-01   p_cons 8.705000e-01   p_joint 8.542000e-01

Outputting figure to mutsig2_images.part000000000053/DUSP19.2_670_10000_0.4303_0.8705_0.8542.png
                gene_name: DUSP19
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 90 percent done.
DUSP22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.833421e-03	ci left: 9.932998e-01	ci right 9.962004e-01	k: 9949	n:10000
KS ci ratio: 1.875794e-02	ci left: 8.059280e-01	ci right 8.212889e-01	k: 8137	n:10000
DUSP22   10000 perm   1 sec   (6998 perm/sec)   p_kst 8.137000e-01   p_cons 9.949000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000053/DUSP22.2_587_10000_0.8137_0.9949_1.png
                gene_name: DUSP22
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 1.00 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
DUSP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.380899e-02	ci left: 7.216873e-01	ci right 7.391782e-01	k: 7305	n:10000
KS ci ratio: 1.063575e-02	ci left: 9.263722e-01	ci right 9.363747e-01	k: 9315	n:10000
DUSP4   10000 perm   1 sec   (6830 perm/sec)   p_kst 9.315000e-01   p_cons 7.305000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000053/DUSP4.2_1365_10000_0.9315_0.7305_1.png
                gene_name: DUSP4
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
DUSP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.694434e-02	ci left: 8.353127e-01	ci right 8.496872e-01	k: 8426	n:10000
Cons ci ratio: 2.304807e-02	ci left: 7.344164e-01	ci right 7.516418e-01	k: 7431	n:10000
KS ci ratio: 2.365790e-02	ci left: 7.242122e-01	ci right 7.416519e-01	k: 7330	n:10000
DUSP6   10000 perm   2 sec   (6614 perm/sec)   p_kst 7.330000e-01   p_cons 7.431000e-01   p_joint 8.426000e-01

Outputting figure to mutsig2_images.part000000000053/DUSP6.2_1158_10000_0.733_0.7431_0.8426.png
                gene_name: DUSP6
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 96 percent done.
DUSP9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.838079e-01	ci left: 3.948997e-02	ci right 4.757866e-02	k: 434	n:10000
Cons ci ratio: 9.021878e-02	ci left: 1.515885e-01	ci right 1.660108e-01	k: 1587	n:10000
KS ci ratio: 2.483822e-01	ci left: 2.127733e-02	ci right 2.740406e-02	k: 242	n:10000
DUSP9   10000 perm   1 sec   (6847 perm/sec)   p_kst 2.420000e-02   p_cons 1.587000e-01   p_joint 4.340000e-02

Joint ci ratio: 1.280629e-01	ci left: 4.187748e-02	ci right 4.765581e-02	k: 894	n:20000
Cons ci ratio: 6.351028e-02	ci left: 1.548945e-01	ci right 1.651045e-01	k: 3199	n:20000
KS ci ratio: 1.727444e-01	ci left: 2.292841e-02	ci right 2.731114e-02	k: 501	n:20000
DUSP9   20000 perm   3 sec   (6014 perm/sec)   p_kst 2.505000e-02   p_cons 1.599500e-01   p_joint 4.470000e-02

Joint ci ratio: 1.030266e-01	ci left: 4.365689e-02	ci right 4.843152e-02	k: 1380	n:30000
Cons ci ratio: 5.219314e-02	ci left: 1.541201e-01	ci right 1.624129e-01	k: 4747	n:30000
KS ci ratio: 1.388857e-01	ci left: 2.406758e-02	ci right 2.769170e-02	k: 775	n:30000
DUSP9   30000 perm   5 sec   (5712 perm/sec)   p_kst 2.583333e-02   p_cons 1.582333e-01   p_joint 4.600000e-02

Joint ci ratio: 8.867843e-02	ci left: 4.450592e-02	ci right 4.866022e-02	k: 1862	n:40000
Cons ci ratio: 4.516116e-02	ci left: 1.549086e-01	ci right 1.620910e-01	k: 6339	n:40000
KS ci ratio: 1.190253e-01	ci left: 2.482656e-02	ci right 2.799270e-02	k: 1055	n:40000
DUSP9   40000 perm   7 sec   (5515 perm/sec)   p_kst 2.637500e-02   p_cons 1.584750e-01   p_joint 4.655000e-02

Joint ci ratio: 7.958128e-02	ci left: 4.443527e-02	ci right 4.813763e-02	k: 2313	n:50000
Cons ci ratio: 4.036015e-02	ci left: 1.555071e-01	ci right 1.619326e-01	k: 7935	n:50000
KS ci ratio: 1.068762e-01	ci left: 2.479801e-02	ci right 2.761736e-02	k: 1309	n:50000
DUSP9   50000 perm   9 sec   (5370 perm/sec)   p_kst 2.618000e-02   p_cons 1.587000e-01   p_joint 4.626000e-02

Joint ci ratio: 7.204833e-02	ci left: 4.532018e-02	ci right 4.872381e-02	k: 2820	n:60000
Cons ci ratio: 3.662492e-02	ci left: 1.573725e-01	ci right 1.632604e-01	k: 9618	n:60000
KS ci ratio: 9.665272e-02	ci left: 2.539216e-02	ci right 2.798722e-02	k: 1600	n:60000
DUSP9   60000 perm   11 sec   (5240 perm/sec)   p_kst 2.666667e-02   p_cons 1.603000e-01   p_joint 4.700000e-02

Outputting figure to mutsig2_images.part000000000053/DUSP9.2_1167_60000_0.026667_0.1603_0.047.png
                gene_name: DUSP9
               theta_stop: 0.097 
                    nperm: 60000 
                     p_ks: 0.027 
        ci_ks_bounds_left: 0.025 
       ci_ks_bounds_right: 0.028 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.047 
     ci_joint_bounds_left: 0.045 
    ci_joint_bounds_right: 0.049 

Current progress: 98 percent done.
DVL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.607861e-01	ci left: 5.157346e-02	ci right 6.068728e-02	k: 560	n:10000
KS ci ratio: 6.298409e-02	ci left: 2.703238e-01	ci right 2.880050e-01	k: 2791	n:10000
DVL3   10000 perm   2 sec   (6282 perm/sec)   p_kst 2.791000e-01   p_cons 5.600000e-02   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 1.127930e-01	ci left: 5.372913e-02	ci right 6.020043e-02	k: 1138	n:20000
KS ci ratio: 4.430002e-02	ci left: 2.750757e-01	ci right 2.875880e-01	k: 5626	n:20000
DVL3   20000 perm   4 sec   (5588 perm/sec)   p_kst 2.813000e-01   p_cons 5.690000e-02   p_joint 1

Joint ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
Cons ci ratio: 9.157119e-02	ci left: 5.492461e-02	ci right 6.022814e-02	k: 1726	n:30000
KS ci ratio: 3.607126e-02	ci left: 2.773437e-01	ci right 2.875651e-01	k: 8473	n:30000
DVL3   30000 perm   6 sec   (5321 perm/sec)   p_kst 2.824333e-01   p_cons 5.753333e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000053/DVL3.2_2211_30000_0.28243_0.057533_1.png
                gene_name: DVL3
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.058 
      ci_cons_bounds_left: 0.055 
     ci_cons_bounds_right: 0.060 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000053
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 53 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1652>
Subject: Job 8004035: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1652>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000054> was used as the working directory.
Started at Sun Nov 11 15:05:23 2012
Results reported at Sun Nov 11 15:12:22 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000054.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000054.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 54  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000054.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    446.73 sec.
    Max Memory :      4703 MB
    Max Swap   :      7051 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
54
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 54
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 54: processing genes 4796 - 4885
Calculating significance of each gene.
Using projection method.
4796	DYNLL1	1
4797	DYNLL2	2.358303e-01
4798	DYNLRB1	2.107677e-01
4799	DYNLRB2	1.959041e-01
4800	DYNLT1	1
4801	DYNLT3	1
4802	DYRK1A	1.390540e-01
4803	DYRK1B	3.253436e-01
4804	DYRK2	8.149057e-01
4805	DYRK3	5.468564e-01
4806	DYRK4	5.957413e-01
4807	DYSF	9.903852e-01
4808	DYSFIP1	1
4809	DYTN	1.976084e-01
4810	DYX1C1	7.813853e-01
4811	DZIP1	9.606798e-01
4812	DZIP1L	1
4813	DZIP3	1.079814e-01
4814	E2F1	4.773557e-01
4815	E2F2	1
4816	E2F3	1
4817	E2F4	1
4818	E2F5	2.365163e-01
4819	E2F6	1
4820	E2F7	8.679234e-01
4821	E2F8	6.768340e-01
4822	E4F1	4.679710e-01
4823	EAF1	1
4824	EAF2	3.174793e-01
4825	EAPP	3.576384e-01
4826	EARS2	3.587792e-01
4827	EBAG9	5.792872e-01
4828	EBF1	5.687955e-03
4829	EBF2	8.011128e-01
4830	EBF3	1
4831	EBI3	1
4832	EBLN2	1
4833	EBNA1BP2	7.716336e-01
4834	EBP	1
4835	EBPL	1
4836	ECD	8.044944e-01
4837	ECE1	1
4838	ECE2	1
4839	ECEL1	3.416459e-01
4840	ECH1	4.858365e-01
4841	ECHDC1	1
4842	ECHDC2	6.948028e-01
4843	ECHDC3	1
4844	ECHS1	6.729380e-01
4845	ECM1	7.901920e-01
4846	ECM2	5.256794e-01
4847	ECSCR	1
4848	ECSIT	1
4849	ECT2	1
4850	ECT2L	2.765463e-01
4851	EDA	1
4852	EDA2R	5.108732e-01
4853	EDAR	4.154936e-01
4854	EDARADD	2.073171e-01
4855	EDC3	1
4856	EDC4	9.630657e-01
4857	EDDM3A	1
4858	EDDM3B	2.808155e-01
4859	EDEM1	8.902351e-01
4860	EDEM2	9.236420e-01
4861	EDEM3	3.709297e-01
4862	EDF1	1
4863	EDIL3	2.794607e-01
4864	EDN1	1
4865	EDN2	3.426660e-01
4866	EDN3	8.798697e-02
4867	EDNRA	7.821562e-01
4868	EDNRB	2.137297e-02
4869	EEA1	9.223268e-01
4870	EED	4.697851e-01
4871	EEF1A1	5.256581e-01
4872	EEF1A2	3.076569e-01
4873	EEF1B2	3.282796e-01
4874	EEF1D	8.723323e-01
4875	EEF1E1	1
4876	EEF1G	2.988388e-01
4877	EEF2	7.953126e-01
4878	EEF2K	1.916233e-01
4879	EEFSEC	1
4880	EEPD1	8.729739e-01
4881	EFCAB1	4.137101e-01
4882	EFCAB2	1
4883	EFCAB3	1.193021e-01
4884	EFCAB4A	2.364399e-01
4885	EFCAB4B	1.846146e-01
Done

Running MutSig 2:
Scatter job 54: processing genes 4796 - 4885
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
DYSF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.794543e-02	ci left: 6.536391e-01	ci right 6.722659e-01	k: 6630	n:10000
Cons ci ratio: 4.483114e-02	ci left: 4.234587e-01	ci right 4.429803e-01	k: 4332	n:10000
KS ci ratio: 3.568287e-02	ci left: 5.369808e-01	ci right 5.565920e-01	k: 5468	n:10000
DYSF   10000 perm   3 sec   (3651 perm/sec)   p_kst 5.468000e-01   p_cons 4.332000e-01   p_joint 6.630000e-01

Outputting figure to mutsig2_images.part000000000054/DYSF.15_6722_10000_0.5468_0.4332_0.663.png
                gene_name: DYSF
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 2 percent done.
DZIP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.093456e-02	ci left: 1.495278e-01	ci right 1.638728e-01	k: 1566	n:10000
Cons ci ratio: 4.868751e-02	ci left: 3.836086e-01	ci right 4.028536e-01	k: 3932	n:10000
KS ci ratio: 1.287741e-01	ci left: 7.931430e-02	ci right 9.032897e-02	k: 847	n:10000
DZIP3   10000 perm   2 sec   (4600 perm/sec)   p_kst 8.470000e-02   p_cons 3.932000e-01   p_joint 1.566000e-01

Joint ci ratio: 4.969984e-02	ci left: 2.313184e-01	ci right 2.431581e-01	k: 4744	n:20000
Cons ci ratio: 3.465895e-02	ci left: 3.832815e-01	ci right 3.968505e-01	k: 7801	n:20000
KS ci ratio: 9.088334e-02	ci left: 8.121946e-02	ci right 8.900166e-02	k: 1701	n:20000
DZIP3   20000 perm   5 sec   (4184 perm/sec)   p_kst 8.505000e-02   p_cons 3.900500e-01   p_joint 2.372000e-01

Outputting figure to mutsig2_images.part000000000054/DZIP3.8_3751_20000_0.08505_0.39005_0.2372.png
                gene_name: DZIP3
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.085 
        ci_ks_bounds_left: 0.081 
       ci_ks_bounds_right: 0.089 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 5 percent done.
EBF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.241887e-01	ci left: 8.494677e-02	ci right 9.629302e-02	k: 905	n:10000
Cons ci ratio: 1.661901e-01	ci left: 4.830553e-02	ci right 5.715732e-02	k: 526	n:10000
KS ci ratio: 1.087943e-01	ci left: 1.086148e-01	ci right 1.212105e-01	k: 1148	n:10000
EBF1   10000 perm   2 sec   (5152 perm/sec)   p_kst 1.148000e-01   p_cons 5.260000e-02   p_joint 9.050000e-02

Joint ci ratio: 9.866417e-02	ci left: 6.952973e-02	ci right 7.679495e-02	k: 1462	n:20000
Cons ci ratio: 1.174580e-01	ci left: 4.964363e-02	ci right 5.588721e-02	k: 1054	n:20000
KS ci ratio: 7.646149e-02	ci left: 1.116914e-01	ci right 1.206206e-01	k: 2322	n:20000
EBF1   20000 perm   4 sec   (4730 perm/sec)   p_kst 1.161000e-01   p_cons 5.270000e-02   p_joint 7.310000e-02

Joint ci ratio: 7.927103e-02	ci left: 7.237132e-02	ci right 7.837789e-02	k: 2260	n:30000
Cons ci ratio: 9.702640e-02	ci left: 4.909101e-02	ci right 5.412960e-02	k: 1547	n:30000
KS ci ratio: 6.268051e-02	ci left: 1.117066e-01	ci right 1.189681e-01	k: 3459	n:30000
EBF1   30000 perm   7 sec   (4560 perm/sec)   p_kst 1.153000e-01   p_cons 5.156667e-02   p_joint 7.533333e-02

Outputting figure to mutsig2_images.part000000000054/EBF1.8_1840_30000_0.1153_0.051567_0.075333.png
                gene_name: EBF1
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.052 
      ci_cons_bounds_left: 0.049 
     ci_cons_bounds_right: 0.054 
                  p_joint: 0.075 
     ci_joint_bounds_left: 0.072 
    ci_joint_bounds_right: 0.078 

Current progress: 8 percent done.
DYRK1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.283413e-02	ci left: 2.163531e-01	ci right 2.328076e-01	k: 2245	n:10000
Cons ci ratio: 1.257205e-01	ci left: 8.300372e-02	ci right 9.423727e-02	k: 885	n:10000
KS ci ratio: 5.710380e-02	ci left: 3.110592e-01	ci right 3.294457e-01	k: 3202	n:10000
DYRK1A   10000 perm   2 sec   (5610 perm/sec)   p_kst 3.202000e-01   p_cons 8.850000e-02   p_joint 2.245000e-01

Joint ci ratio: 5.959551e-02	ci left: 1.725232e-01	ci right 1.831706e-01	k: 3556	n:20000
Cons ci ratio: 8.973561e-02	ci left: 8.317825e-02	ci right 9.104227e-02	k: 1741	n:20000
KS ci ratio: 4.013867e-02	ci left: 3.163711e-01	ci right 3.293804e-01	k: 6457	n:20000
DYRK1A   20000 perm   4 sec   (4837 perm/sec)   p_kst 3.228500e-01   p_cons 8.705000e-02   p_joint 1.778000e-01

Outputting figure to mutsig2_images.part000000000054/DYRK1A.6_2420_20000_0.32285_0.08705_0.1778.png
                gene_name: DYRK1A
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.087 
      ci_cons_bounds_left: 0.083 
     ci_cons_bounds_right: 0.091 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 10 percent done.
ECE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.347668e-02	ci left: 7.272426e-01	ci right 7.446198e-01	k: 7360	n:10000
Cons ci ratio: 4.208251e-02	ci left: 4.546864e-01	ci right 4.743342e-01	k: 4645	n:10000
KS ci ratio: 2.476599e-02	ci left: 7.057380e-01	ci right 7.235368e-01	k: 7147	n:10000
ECE2   10000 perm   2 sec   (5653 perm/sec)   p_kst 7.147000e-01   p_cons 4.645000e-01   p_joint 7.360000e-01

Outputting figure to mutsig2_images.part000000000054/ECE2.6_3292_10000_0.7147_0.4645_0.736.png
                gene_name: ECE2
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.74 

Current progress: 12 percent done.
ECT2L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.388992e-02	ci left: 8.821675e-01	ci right 8.946052e-01	k: 8885	n:10000
Cons ci ratio: 3.253245e-02	ci left: 5.823922e-01	ci right 6.017541e-01	k: 5921	n:10000
KS ci ratio: 2.435360e-02	ci left: 7.126006e-01	ci right 7.302702e-01	k: 7215	n:10000
ECT2L   10000 perm   2 sec   (5286 perm/sec)   p_kst 7.215000e-01   p_cons 5.921000e-01   p_joint 8.885000e-01

Outputting figure to mutsig2_images.part000000000054/ECT2L.5_2795_10000_0.7215_0.5921_0.8885.png
                gene_name: ECT2L
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 15 percent done.
EDEM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.977813e-02	ci left: 7.890818e-01	ci right 8.049448e-01	k: 7971	n:10000
Cons ci ratio: 1.023915e-02	ci left: 9.312316e-01	ci right 9.409125e-01	k: 9362	n:10000
KS ci ratio: 3.816527e-02	ci left: 5.034510e-01	ci right 5.231413e-01	k: 5133	n:10000
EDEM3   10000 perm   2 sec   (5022 perm/sec)   p_kst 5.133000e-01   p_cons 9.362000e-01   p_joint 7.971000e-01

Outputting figure to mutsig2_images.part000000000054/EDEM3.5_2879_10000_0.5133_0.9362_0.7971.png
                gene_name: EDEM3
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 18 percent done.
EDNRB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.755249e-02	ci left: 6.599808e-01	ci right 6.785206e-01	k: 6693	n:10000
Cons ci ratio: 6.639033e-02	ci left: 2.498415e-01	ci right 2.670994e-01	k: 2584	n:10000
KS ci ratio: 3.864930e-02	ci left: 4.971503e-01	ci right 5.168456e-01	k: 5070	n:10000
EDNRB   10000 perm   2 sec   (5289 perm/sec)   p_kst 5.070000e-01   p_cons 2.584000e-01   p_joint 6.693000e-01

Outputting figure to mutsig2_images.part000000000054/EDNRB.5_1478_10000_0.507_0.2584_0.6693.png
                gene_name: EDNRB
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 20 percent done.
EEF2K
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.811095e-02	ci left: 3.892832e-01	ci right 4.085757e-01	k: 3989	n:10000
Cons ci ratio: 5.800771e-02	ci left: 3.043136e-01	ci right 3.225952e-01	k: 3134	n:10000
KS ci ratio: 3.018666e-02	ci left: 6.181391e-01	ci right 6.371865e-01	k: 6277	n:10000
EEF2K   10000 perm   2 sec   (5693 perm/sec)   p_kst 6.277000e-01   p_cons 3.134000e-01   p_joint 3.989000e-01

Outputting figure to mutsig2_images.part000000000054/EEF2K.5_2246_10000_0.6277_0.3134_0.3989.png
                gene_name: EEF2K
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 22 percent done.
DYTN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.548479e-02	ci left: 2.550834e-01	ci right 2.724544e-01	k: 2637	n:10000
Cons ci ratio: 1.301200e-01	ci left: 7.776183e-02	ci right 8.868240e-02	k: 831	n:10000
KS ci ratio: 5.512284e-03	ci left: 9.778092e-01	ci right 9.833058e-01	k: 9807	n:10000
DYTN   10000 perm   2 sec   (5543 perm/sec)   p_kst 9.807000e-01   p_cons 8.310000e-02   p_joint 2.637000e-01

Joint ci ratio: 4.000595e-02	ci left: 3.178133e-01	ci right 3.308378e-01	k: 6486	n:20000
Cons ci ratio: 8.778979e-02	ci left: 8.665663e-02	ci right 9.466284e-02	k: 1812	n:20000
KS ci ratio: 3.974423e-03	ci left: 9.778588e-01	ci right 9.818000e-01	k: 19598	n:20000
DYTN   20000 perm   4 sec   (4981 perm/sec)   p_kst 9.799000e-01   p_cons 9.060000e-02   p_joint 3.243000e-01

Outputting figure to mutsig2_images.part000000000054/DYTN.4_1785_20000_0.9799_0.0906_0.3243.png
                gene_name: DYTN
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.091 
      ci_cons_bounds_left: 0.087 
     ci_cons_bounds_right: 0.095 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 25 percent done.
EFCAB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.682941e-02	ci left: 1.618987e-01	ci right 1.766945e-01	k: 1692	n:10000
Cons ci ratio: 5.706448e-02	ci left: 3.113568e-01	ci right 3.297478e-01	k: 3205	n:10000
KS ci ratio: 1.151790e-01	ci left: 9.779067e-02	ci right 1.098412e-01	k: 1037	n:10000
EFCAB3   10000 perm   2 sec   (5641 perm/sec)   p_kst 1.037000e-01   p_cons 3.205000e-01   p_joint 1.692000e-01

Joint ci ratio: 6.955317e-02	ci left: 1.322626e-01	ci right 1.418432e-01	k: 2740	n:20000
Cons ci ratio: 4.081847e-02	ci left: 3.091114e-01	ci right 3.220422e-01	k: 6311	n:20000
KS ci ratio: 8.299286e-02	ci left: 9.617007e-02	ci right 1.045465e-01	k: 2006	n:20000
EFCAB3   20000 perm   4 sec   (5122 perm/sec)   p_kst 1.003000e-01   p_cons 3.155500e-01   p_joint 1.370000e-01

Outputting figure to mutsig2_images.part000000000054/EFCAB3.4_1521_20000_0.1003_0.31555_0.137.png
                gene_name: EFCAB3
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.096 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 28 percent done.
DYRK1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.220355e-02	ci left: 5.873093e-01	ci right 6.066342e-01	k: 5970	n:10000
Cons ci ratio: 5.641595e-02	ci left: 3.163183e-01	ci right 3.347835e-01	k: 3255	n:10000
KS ci ratio: 2.126095e-02	ci left: 7.643573e-01	ci right 7.808836e-01	k: 7727	n:10000
DYRK1B   10000 perm   3 sec   (3448 perm/sec)   p_kst 7.727000e-01   p_cons 3.255000e-01   p_joint 5.970000e-01

Outputting figure to mutsig2_images.part000000000054/DYRK1B.3_1930_10000_0.7727_0.3255_0.597.png
                gene_name: DYRK1B
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 30 percent done.
DYRK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.381586e-01	ci left: 6.933115e-02	ci right 7.971834e-02	k: 744	n:10000
Cons ci ratio: 1.154861e-02	ci left: 9.147155e-01	ci right 9.254382e-01	k: 9202	n:10000
KS ci ratio: 1.694391e-01	ci left: 4.648153e-02	ci right 5.518251e-02	k: 507	n:10000
DYRK2   10000 perm   2 sec   (4641 perm/sec)   p_kst 5.070000e-02   p_cons 9.202000e-01   p_joint 7.440000e-02

Joint ci ratio: 9.862781e-02	ci left: 6.957859e-02	ci right 7.684608e-02	k: 1463	n:20000
Cons ci ratio: 8.514920e-03	ci left: 9.098249e-01	ci right 9.176543e-01	k: 18276	n:20000
KS ci ratio: 1.215897e-01	ci left: 4.638886e-02	ci right 5.244300e-02	k: 987	n:20000
DYRK2   20000 perm   4 sec   (4734 perm/sec)   p_kst 4.935000e-02   p_cons 9.138000e-01   p_joint 7.315000e-02

Joint ci ratio: 8.396303e-02	ci left: 6.488241e-02	ci right 7.060165e-02	k: 2031	n:30000
Cons ci ratio: 6.963726e-03	ci left: 9.102961e-01	ci right 9.166902e-01	k: 27406	n:30000
KS ci ratio: 9.931356e-02	ci left: 4.690981e-02	ci right 5.184459e-02	k: 1480	n:30000
DYRK2   30000 perm   6 sec   (4743 perm/sec)   p_kst 4.933333e-02   p_cons 9.135333e-01   p_joint 6.770000e-02

Outputting figure to mutsig2_images.part000000000054/DYRK2.3_1818_30000_0.049333_0.91353_0.0677.png
                gene_name: DYRK2
               theta_stop: 0.099 
                    nperm: 30000 
                     p_ks: 0.049 
        ci_ks_bounds_left: 0.047 
       ci_ks_bounds_right: 0.052 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.068 
     ci_joint_bounds_left: 0.065 
    ci_joint_bounds_right: 0.071 

Current progress: 32 percent done.
E2F8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.807679e-02	ci left: 2.404497e-01	ci right 2.574968e-01	k: 2489	n:10000
Cons ci ratio: 7.162196e-02	ci left: 2.221762e-01	ci right 2.387810e-01	k: 2304	n:10000
KS ci ratio: 5.267779e-02	ci left: 3.469066e-01	ci right 3.657772e-01	k: 3563	n:10000
E2F8   10000 perm   2 sec   (5563 perm/sec)   p_kst 3.563000e-01   p_cons 2.304000e-01   p_joint 2.489000e-01

Outputting figure to mutsig2_images.part000000000054/E2F8.3_2652_10000_0.3563_0.2304_0.2489.png
                gene_name: E2F8
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 35 percent done.
E4F1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.392110e-02	ci left: 1.715307e-01	ci right 1.866567e-01	k: 1790	n:10000
Cons ci ratio: 2.256539e-02	ci left: 7.425032e-01	ci right 7.595503e-01	k: 7511	n:10000
KS ci ratio: 1.510425e-01	ci left: 5.831582e-02	ci right 6.794061e-02	k: 630	n:10000
E4F1   10000 perm   2 sec   (5621 perm/sec)   p_kst 6.300000e-02   p_cons 7.511000e-01   p_joint 1.790000e-01

Joint ci ratio: 5.752079e-02	ci left: 1.830013e-01	ci right 1.938895e-01	k: 3768	n:20000
Cons ci ratio: 1.584106e-02	ci left: 7.477679e-01	ci right 7.597582e-01	k: 15076	n:20000
KS ci ratio: 1.107455e-01	ci left: 5.567637e-02	ci right 6.225258e-02	k: 1178	n:20000
E4F1   20000 perm   4 sec   (5056 perm/sec)   p_kst 5.890000e-02   p_cons 7.538000e-01   p_joint 1.884000e-01

Joint ci ratio: 5.469946e-02	ci left: 1.421539e-01	ci right 1.501815e-01	k: 4384	n:30000
Cons ci ratio: 1.291213e-02	ci left: 7.495216e-01	ci right 7.592958e-01	k: 22633	n:30000
KS ci ratio: 9.095804e-02	ci left: 5.564217e-02	ci right 6.097710e-02	k: 1748	n:30000
E4F1   30000 perm   6 sec   (4847 perm/sec)   p_kst 5.826667e-02   p_cons 7.544333e-01   p_joint 1.461333e-01

Outputting figure to mutsig2_images.part000000000054/E4F1.3_2411_30000_0.058267_0.75443_0.14613.png
                gene_name: E4F1
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.058 
        ci_ks_bounds_left: 0.056 
       ci_ks_bounds_right: 0.061 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 38 percent done.
EARS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.504683e-02	ci left: 5.458961e-01	ci right 5.654714e-01	k: 5557	n:10000
Cons ci ratio: 6.712558e-02	ci left: 2.456887e-01	ci right 2.628547e-01	k: 2542	n:10000
KS ci ratio: 4.132077e-02	ci left: 4.637727e-01	ci right 4.834426e-01	k: 4736	n:10000
EARS2   10000 perm   2 sec   (6121 perm/sec)   p_kst 4.736000e-01   p_cons 2.542000e-01   p_joint 5.557000e-01

Outputting figure to mutsig2_images.part000000000054/EARS2.3_1608_10000_0.4736_0.2542_0.5557.png
                gene_name: EARS2
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 40 percent done.
EBF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.852906e-02	ci left: 6.442810e-01	ci right 6.630294e-01	k: 6537	n:10000
Cons ci ratio: 4.332986e-02	ci left: 4.402151e-01	ci right 4.598141e-01	k: 4500	n:10000
KS ci ratio: 4.209943e-02	ci left: 4.544868e-01	ci right 4.741340e-01	k: 4643	n:10000
EBF2   10000 perm   2 sec   (5760 perm/sec)   p_kst 4.643000e-01   p_cons 4.500000e-01   p_joint 6.537000e-01

Outputting figure to mutsig2_images.part000000000054/EBF2.3_1792_10000_0.4643_0.45_0.6537.png
                gene_name: EBF2
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 42 percent done.
ECEL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.670404e-02	ci left: 6.737778e-01	ci right 6.921155e-01	k: 6830	n:10000
Cons ci ratio: 4.737663e-02	ci left: 3.966523e-01	ci right 4.160023e-01	k: 4063	n:10000
KS ci ratio: 1.928182e-02	ci left: 7.972992e-01	ci right 8.129226e-01	k: 8052	n:10000
ECEL1   10000 perm   3 sec   (3407 perm/sec)   p_kst 8.052000e-01   p_cons 4.063000e-01   p_joint 6.830000e-01

Outputting figure to mutsig2_images.part000000000054/ECEL1.3_2396_10000_0.8052_0.4063_0.683.png
                gene_name: ECEL1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 45 percent done.
ECM2
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.897772e-02	ci left: 6.371392e-01	ci right 6.559753e-01	k: 6466	n:10000
KS ci ratio: 3.654802e-02	ci left: 5.250651e-01	ci right 5.447146e-01	k: 5349	n:10000
ECM2   10000 perm   2 sec   (4119 perm/sec)   p_kst 5.349000e-01   p_cons 6.466000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000054/ECM2.2_2136_10000_0.5349_0.6466_1.png
                gene_name: ECM2
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 48 percent done.
ECT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.880045e-02	ci left: 6.399554e-01	ci right 6.587575e-01	k: 6494	n:10000
Cons ci ratio: 6.816792e-02	ci left: 2.399555e-01	ci right 2.569912e-01	k: 2484	n:10000
KS ci ratio: 1.479197e-02	ci left: 8.687674e-01	ci right 8.818131e-01	k: 8754	n:10000
ECT2   10000 perm   3 sec   (3565 perm/sec)   p_kst 8.754000e-01   p_cons 2.484000e-01   p_joint 6.494000e-01

Outputting figure to mutsig2_images.part000000000054/ECT2.3_2744_10000_0.8754_0.2484_0.6494.png
                gene_name: ECT2
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 50 percent done.
EDC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.123146e-02	ci left: 2.817130e-01	ci right 2.996091e-01	k: 2906	n:10000
KS ci ratio: 1.518244e-02	ci left: 8.628422e-01	ci right 8.761417e-01	k: 8696	n:10000
EDC4   10000 perm   2 sec   (5009 perm/sec)   p_kst 8.696000e-01   p_cons 2.906000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000054/EDC4.3_4322_10000_0.8696_0.2906_1.png
                gene_name: EDC4
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 52 percent done.
EDIL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.292950e-02	ci left: 4.448051e-01	ci right 4.644214e-01	k: 4546	n:10000
KS ci ratio: 5.513094e-02	ci left: 3.264433e-01	ci right 3.450525e-01	k: 3357	n:10000
EDIL3   10000 perm   2 sec   (5882 perm/sec)   p_kst 3.357000e-01   p_cons 4.546000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000054/EDIL3.3_1487_10000_0.3357_0.4546_1.png
                gene_name: EDIL3
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 55 percent done.
EDN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.723660e-02	ci left: 5.157568e-01	ci right 5.354283e-01	k: 5256	n:10000
Cons ci ratio: 8.664246e-03	ci left: 9.491889e-01	ci right 9.575444e-01	k: 9535	n:10000
KS ci ratio: 5.663503e-02	ci left: 3.146312e-01	ci right 3.330715e-01	k: 3238	n:10000
EDN3   10000 perm   2 sec   (6414 perm/sec)   p_kst 3.238000e-01   p_cons 9.535000e-01   p_joint 5.256000e-01

Outputting figure to mutsig2_images.part000000000054/EDN3.3_776_10000_0.3238_0.9535_0.5256.png
                gene_name: EDN3
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 57 percent done.
EEA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.170639e-02	ci left: 1.793999e-01	ci right 1.947829e-01	k: 1870	n:10000
Cons ci ratio: 5.748628e-02	ci left: 3.081821e-01	ci right 3.265244e-01	k: 3173	n:10000
KS ci ratio: 7.992458e-02	ci left: 1.860928e-01	ci right 2.016859e-01	k: 1938	n:10000
EEA1   10000 perm   2 sec   (4863 perm/sec)   p_kst 1.938000e-01   p_cons 3.173000e-01   p_joint 1.870000e-01

Outputting figure to mutsig2_images.part000000000054/EEA1.3_4352_10000_0.1938_0.3173_0.187.png
                gene_name: EEA1
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 60 percent done.
EFCAB4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.028360e-02	ci left: 6.166318e-01	ci right 6.356946e-01	k: 6262	n:10000
Cons ci ratio: 1.866511e-02	ci left: 8.074513e-01	ci right 8.227647e-01	k: 8152	n:10000
KS ci ratio: 5.160444e-02	ci left: 3.563500e-01	ci right 3.753282e-01	k: 3658	n:10000
EFCAB4B   10000 perm   2 sec   (5484 perm/sec)   p_kst 3.658000e-01   p_cons 8.152000e-01   p_joint 6.262000e-01

Outputting figure to mutsig2_images.part000000000054/EFCAB4B.3_2456_10000_0.3658_0.8152_0.6262.png
                gene_name: EFCAB4B
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 62 percent done.
DYRK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.739975e-01	ci left: 4.408409e-02	ci right 5.258151e-02	k: 482	n:10000
Cons ci ratio: 9.434992e-02	ci left: 1.402112e-01	ci right 1.541950e-01	k: 1471	n:10000
KS ci ratio: 2.809059e-01	ci left: 1.641496e-02	ci right 2.187026e-02	k: 190	n:10000
DYRK3   10000 perm   2 sec   (5635 perm/sec)   p_kst 1.900000e-02   p_cons 1.471000e-01   p_joint 4.820000e-02

Joint ci ratio: 7.685506e-02	ci left: 1.106590e-01	ci right 1.195532e-01	k: 2301	n:20000
Cons ci ratio: 6.206165e-02	ci left: 1.611140e-01	ci right 1.714832e-01	k: 3325	n:20000
KS ci ratio: 1.983707e-01	ci left: 1.724818e-02	ci right 2.109342e-02	k: 382	n:20000
DYRK3   20000 perm   4 sec   (5304 perm/sec)   p_kst 1.910000e-02   p_cons 1.662500e-01   p_joint 1.150500e-01

Joint ci ratio: 6.254776e-02	ci left: 1.121340e-01	ci right 1.194073e-01	k: 3472	n:30000
Cons ci ratio: 5.046122e-02	ci left: 1.632241e-01	ci right 1.717071e-01	k: 5023	n:30000
KS ci ratio: 1.602024e-01	ci left: 1.799732e-02	ci right 2.116335e-02	k: 586	n:30000
DYRK3   30000 perm   6 sec   (5080 perm/sec)   p_kst 1.953333e-02   p_cons 1.674333e-01   p_joint 1.157333e-01

Joint ci ratio: 2.925344e-02	ci left: 3.052699e-01	ci right 3.143577e-01	k: 12392	n:40000
Cons ci ratio: 4.376622e-02	ci left: 1.633815e-01	ci right 1.707170e-01	k: 6681	n:40000
KS ci ratio: 1.385295e-01	ci left: 1.826400e-02	ci right 2.100637e-02	k: 784	n:40000
DYRK3   40000 perm   8 sec   (4759 perm/sec)   p_kst 1.960000e-02   p_cons 1.670250e-01   p_joint 3.098000e-01

Joint ci ratio: 6.431428e-02	ci left: 6.693139e-02	ci right 7.139879e-02	k: 3457	n:50000
Cons ci ratio: 3.921200e-02	ci left: 1.633037e-01	ci right 1.698551e-01	k: 8328	n:50000
KS ci ratio: 1.242443e-01	ci left: 1.830595e-02	ci right 2.075028e-02	k: 975	n:50000
DYRK3   50000 perm   11 sec   (4625 perm/sec)   p_kst 1.950000e-02   p_cons 1.665600e-01   p_joint 6.914000e-02

Joint ci ratio: 5.879906e-02	ci left: 6.693521e-02	ci right 7.100660e-02	k: 4137	n:60000
Cons ci ratio: 3.586401e-02	ci left: 1.630638e-01	ci right 1.690353e-01	k: 9962	n:60000
KS ci ratio: 1.136768e-01	ci left: 1.832754e-02	ci right 2.055262e-02	k: 1165	n:60000
DYRK3   60000 perm   13 sec   (4497 perm/sec)   p_kst 1.941667e-02   p_cons 1.660333e-01   p_joint 6.895000e-02

Joint ci ratio: 5.441118e-02	ci left: 6.714727e-02	ci right 7.091712e-02	k: 4831	n:70000
Cons ci ratio: 3.329902e-02	ci left: 1.624983e-01	ci right 1.680152e-01	k: 11567	n:70000
KS ci ratio: 1.041309e-01	ci left: 1.880862e-02	ci right 2.088860e-02	k: 1388	n:70000
DYRK3   70000 perm   16 sec   (4382 perm/sec)   p_kst 1.982857e-02   p_cons 1.652429e-01   p_joint 6.901429e-02

Joint ci ratio: 5.104257e-02	ci left: 6.690723e-02	ci right 7.042413e-02	k: 5492	n:80000
Cons ci ratio: 3.115344e-02	ci left: 1.626326e-01	ci right 1.677917e-01	k: 13216	n:80000
KS ci ratio: 9.801941e-02	ci left: 1.863842e-02	ci right 2.057164e-02	k: 1567	n:80000
DYRK3   80000 perm   18 sec   (4333 perm/sec)   p_kst 1.958750e-02   p_cons 1.652000e-01   p_joint 6.865000e-02

Outputting figure to mutsig2_images.part000000000054/DYRK3.2_1800_80000_0.019588_0.1652_0.06865.png
                gene_name: DYRK3
               theta_stop: 0.098 
                    nperm: 80000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.021 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.069 
     ci_joint_bounds_left: 0.067 
    ci_joint_bounds_right: 0.070 

Current progress: 65 percent done.
DYRK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.974911e-02	ci left: 6.249733e-01	ci right 6.439483e-01	k: 6345	n:10000
Cons ci ratio: 3.768697e-02	ci left: 5.097532e-01	ci right 5.294354e-01	k: 5196	n:10000
KS ci ratio: 4.302484e-02	ci left: 4.437074e-01	ci right 4.633197e-01	k: 4535	n:10000
DYRK4   10000 perm   2 sec   (6299 perm/sec)   p_kst 4.535000e-01   p_cons 5.196000e-01   p_joint 6.345000e-01

Outputting figure to mutsig2_images.part000000000054/DYRK4.2_1607_10000_0.4535_0.5196_0.6345.png
                gene_name: DYRK4
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 68 percent done.
E2F1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.096209e-02	ci left: 2.254342e-01	ci right 2.421211e-01	k: 2337	n:10000
Cons ci ratio: 3.123971e-01	ci left: 1.307848e-02	ci right 1.800961e-02	k: 154	n:10000
KS ci ratio: 5.798077e-02	ci left: 3.045120e-01	ci right 3.227967e-01	k: 3136	n:10000
E2F1   10000 perm   2 sec   (6348 perm/sec)   p_kst 3.136000e-01   p_cons 1.540000e-02   p_joint 2.337000e-01

Joint ci ratio: 3.966165e-02	ci left: 3.215933e-01	ci right 3.346567e-01	k: 6562	n:20000
Cons ci ratio: 2.007894e-01	ci left: 1.682030e-02	ci right 2.062146e-02	k: 373	n:20000
KS ci ratio: 4.084683e-02	ci left: 3.088131e-01	ci right 3.217406e-01	k: 6305	n:20000
E2F1   20000 perm   4 sec   (5663 perm/sec)   p_kst 3.152500e-01   p_cons 1.865000e-02   p_joint 3.281000e-01

Joint ci ratio: 3.354280e-02	ci left: 3.075553e-01	ci right 3.180810e-01	k: 9384	n:30000
Cons ci ratio: 1.702378e-01	ci left: 1.588671e-02	ci right 1.887447e-02	k: 520	n:30000
KS ci ratio: 3.323069e-02	ci left: 3.115700e-01	ci right 3.221322e-01	k: 9505	n:30000
E2F1   30000 perm   6 sec   (5386 perm/sec)   p_kst 3.168333e-01   p_cons 1.733333e-02   p_joint 3.128000e-01

Joint ci ratio: 3.232646e-02	ci left: 2.644349e-01	ci right 2.731487e-01	k: 10751	n:40000
Cons ci ratio: 1.472871e-01	ci left: 1.611714e-02	ci right 1.870360e-02	k: 695	n:40000
KS ci ratio: 2.881468e-02	ci left: 3.117437e-01	ci right 3.208829e-01	k: 12652	n:40000
E2F1   40000 perm   8 sec   (5204 perm/sec)   p_kst 3.163000e-01   p_cons 1.737500e-02   p_joint 2.687750e-01

Joint ci ratio: 2.456822e-02	ci left: 3.332153e-01	ci right 3.415236e-01	k: 16868	n:50000
Cons ci ratio: 1.304468e-01	ci left: 1.658165e-02	ci right 1.891482e-02	k: 886	n:50000
KS ci ratio: 2.572059e-02	ci left: 3.131016e-01	ci right 3.212797e-01	k: 15859	n:50000
E2F1   50000 perm   10 sec   (5072 perm/sec)   p_kst 3.171800e-01   p_cons 1.772000e-02   p_joint 3.373600e-01

Joint ci ratio: 2.401488e-02	ci left: 3.038087e-01	ci right 3.112099e-01	k: 18450	n:60000
Cons ci ratio: 1.199678e-01	ci left: 1.643350e-02	ci right 1.854687e-02	k: 1048	n:60000
KS ci ratio: 2.346604e-02	ci left: 3.137094e-01	ci right 3.211750e-01	k: 19046	n:60000
E2F1   60000 perm   12 sec   (4950 perm/sec)   p_kst 3.174333e-01   p_cons 1.746667e-02   p_joint 3.075000e-01

Joint ci ratio: 2.165071e-02	ci left: 3.154764e-01	ci right 3.223957e-01	k: 22325	n:70000
Cons ci ratio: 1.106934e-01	ci left: 1.662490e-02	ci right 1.858680e-02	k: 1231	n:70000
KS ci ratio: 2.172712e-02	ci left: 3.139523e-01	ci right 3.208628e-01	k: 22218	n:70000
E2F1   70000 perm   14 sec   (4839 perm/sec)   p_kst 3.174000e-01   p_cons 1.758571e-02   p_joint 3.189286e-01

Joint ci ratio: 2.076053e-02	ci left: 3.050634e-01	ci right 3.114755e-01	k: 24661	n:80000
Cons ci ratio: 1.032833e-01	ci left: 1.677319e-02	ci right 1.861203e-02	k: 1414	n:80000
KS ci ratio: 2.034683e-02	ci left: 3.136888e-01	ci right 3.201495e-01	k: 25353	n:80000
E2F1   80000 perm   17 sec   (4734 perm/sec)   p_kst 3.169125e-01   p_cons 1.767500e-02   p_joint 3.082625e-01

Joint ci ratio: 2.043377e-02	ci left: 2.872583e-01	ci right 2.931997e-01	k: 26120	n:90000
Cons ci ratio: 9.838402e-02	ci left: 1.647987e-02	ci right 1.819589e-02	k: 1559	n:90000
KS ci ratio: 1.919759e-02	ci left: 3.135504e-01	ci right 3.196392e-01	k: 28493	n:90000
E2F1   90000 perm   19 sec   (4637 perm/sec)   p_kst 3.165889e-01   p_cons 1.732222e-02   p_joint 2.902222e-01

Outputting figure to mutsig2_images.part000000000054/E2F1.2_1342_90000_0.31659_0.017322_0.29022.png
                gene_name: E2F1
               theta_stop: 0.098 
                    nperm: 90000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.017 
      ci_cons_bounds_left: 0.016 
     ci_cons_bounds_right: 0.018 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.29 

Current progress: 70 percent done.
E2F5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.703829e-02	ci left: 3.115552e-01	ci right 3.299493e-01	k: 3207	n:10000
Cons ci ratio: 8.452535e-02	ci left: 1.694660e-01	ci right 1.845227e-01	k: 1769	n:10000
KS ci ratio: 5.818335e-02	ci left: 3.030243e-01	ci right 3.212853e-01	k: 3121	n:10000
E2F5   10000 perm   2 sec   (6552 perm/sec)   p_kst 3.121000e-01   p_cons 1.769000e-01   p_joint 3.207000e-01

Outputting figure to mutsig2_images.part000000000054/E2F5.2_1073_10000_0.3121_0.1769_0.3207.png
                gene_name: E2F5
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 72 percent done.
E2F7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.313783e-02	ci left: 4.424102e-01	ci right 4.620177e-01	k: 4522	n:10000
Cons ci ratio: 4.258492e-02	ci left: 4.487971e-01	ci right 4.684270e-01	k: 4586	n:10000
KS ci ratio: 8.944993e-02	ci left: 1.538460e-01	ci right 1.683520e-01	k: 1610	n:10000
E2F7   10000 perm   2 sec   (5839 perm/sec)   p_kst 1.610000e-01   p_cons 4.586000e-01   p_joint 4.522000e-01

Outputting figure to mutsig2_images.part000000000054/E2F7.2_2784_10000_0.161_0.4586_0.4522.png
                gene_name: E2F7
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 75 percent done.
EAF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.114669e-02	ci left: 1.814664e-01	ci right 1.969151e-01	k: 1891	n:10000
Cons ci ratio: 1.423304e-01	ci left: 6.546168e-02	ci right 7.559023e-02	k: 704	n:10000
KS ci ratio: 1.096501e-02	ci left: 9.222420e-01	ci right 9.325074e-01	k: 9275	n:10000
EAF2   10000 perm   1 sec   (6780 perm/sec)   p_kst 9.275000e-01   p_cons 7.040000e-02   p_joint 1.891000e-01

Joint ci ratio: 5.729612e-02	ci left: 1.841879e-01	ci right 1.951025e-01	k: 3792	n:20000
Cons ci ratio: 1.007603e-01	ci left: 6.679456e-02	ci right 7.393096e-02	k: 1406	n:20000
KS ci ratio: 7.621165e-03	ci left: 9.261202e-01	ci right 9.332543e-01	k: 18595	n:20000
EAF2   20000 perm   3 sec   (5968 perm/sec)   p_kst 9.297500e-01   p_cons 7.030000e-02   p_joint 1.896000e-01

Joint ci ratio: 5.794276e-02	ci left: 1.285180e-01	ci right 1.362200e-01	k: 3970	n:30000
Cons ci ratio: 8.223961e-02	ci left: 6.749752e-02	ci right 7.331934e-02	k: 2111	n:30000
KS ci ratio: 6.123968e-03	ci left: 9.288887e-01	ci right 9.346274e-01	k: 27954	n:30000
EAF2   30000 perm   5 sec   (5716 perm/sec)   p_kst 9.318000e-01   p_cons 7.036667e-02   p_joint 1.323333e-01

Outputting figure to mutsig2_images.part000000000054/EAF2.2_807_30000_0.9318_0.070367_0.13233.png
                gene_name: EAF2
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.070 
      ci_cons_bounds_left: 0.067 
     ci_cons_bounds_right: 0.073 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 78 percent done.
EAPP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.841444e-02	ci left: 3.013384e-01	ci right 3.195722e-01	k: 3104	n:10000
Cons ci ratio: 4.574653e-02	ci left: 4.135897e-01	ci right 4.330550e-01	k: 4233	n:10000
KS ci ratio: 1.528606e-01	ci left: 5.696592e-02	ci right 6.649137e-02	k: 616	n:10000
EAPP   10000 perm   2 sec   (6552 perm/sec)   p_kst 6.160000e-02   p_cons 4.233000e-01   p_joint 3.104000e-01

Joint ci ratio: 3.707078e-02	ci left: 3.518995e-01	ci right 3.652416e-01	k: 7171	n:20000
Cons ci ratio: 3.244354e-02	ci left: 4.150423e-01	ci right 4.287804e-01	k: 8438	n:20000
KS ci ratio: 1.068507e-01	ci left: 5.967148e-02	ci right 6.645624e-02	k: 1260	n:20000
EAPP   20000 perm   3 sec   (5856 perm/sec)   p_kst 6.300000e-02   p_cons 4.219000e-01   p_joint 3.585500e-01

Joint ci ratio: 3.050424e-02	ci left: 3.495828e-01	ci right 3.604453e-01	k: 10650	n:30000
Cons ci ratio: 2.656338e-02	ci left: 4.149718e-01	ci right 4.261769e-01	k: 12617	n:30000
KS ci ratio: 8.725616e-02	ci left: 6.027642e-02	ci right 6.580858e-02	k: 1890	n:30000
EAPP   30000 perm   5 sec   (5572 perm/sec)   p_kst 6.300000e-02   p_cons 4.205667e-01   p_joint 3.550000e-01

Outputting figure to mutsig2_images.part000000000054/EAPP.2_882_30000_0.063_0.42057_0.355.png
                gene_name: EAPP
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.063 
        ci_ks_bounds_left: 0.060 
       ci_ks_bounds_right: 0.066 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 80 percent done.
EBF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.387610e-03	ci left: 9.521083e-01	ci right 9.602233e-01	k: 9563	n:10000
Cons ci ratio: 1.287741e-01	ci left: 7.931430e-02	ci right 9.032897e-02	k: 847	n:10000
KS ci ratio: 8.898945e-02	ci left: 1.552204e-01	ci right 1.697768e-01	k: 1624	n:10000
EBF3   10000 perm   2 sec   (6251 perm/sec)   p_kst 1.624000e-01   p_cons 8.470000e-02   p_joint 9.563000e-01

Joint ci ratio: 6.168589e-03	ci left: 9.498209e-01	ci right 9.557465e-01	k: 19057	n:20000
Cons ci ratio: 9.091253e-02	ci left: 8.117049e-02	ci right 8.895064e-02	k: 1700	n:20000
KS ci ratio: 6.278765e-02	ci left: 1.579546e-01	ci right 1.682436e-01	k: 3261	n:20000
EBF3   20000 perm   4 sec   (5609 perm/sec)   p_kst 1.630500e-01   p_cons 8.500000e-02   p_joint 9.528500e-01

Outputting figure to mutsig2_images.part000000000054/EBF3.2_1720_20000_0.16305_0.085_0.95285.png
                gene_name: EBF3
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.085 
      ci_cons_bounds_left: 0.081 
     ci_cons_bounds_right: 0.089 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 82 percent done.
EDAR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.008195e-02	ci left: 4.789571e-01	ci right 4.986494e-01	k: 4888	n:10000
KS ci ratio: 1.346599e-02	ci left: 8.883137e-01	ci right 9.004554e-01	k: 8945	n:10000
EDAR   10000 perm   2 sec   (6418 perm/sec)   p_kst 8.945000e-01   p_cons 4.888000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000054/EDAR.2_1391_10000_0.8945_0.4888_1.png
                gene_name: EDAR
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 85 percent done.
EDARADD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.348025e-02	ci left: 8.881088e-01	ci right 9.002605e-01	k: 8943	n:10000
Cons ci ratio: 1.267511e-02	ci left: 8.994953e-01	ci right 9.110674e-01	k: 9054	n:10000
KS ci ratio: 3.834130e-02	ci left: 5.011505e-01	ci right 5.208430e-01	k: 5110	n:10000
EDARADD   10000 perm   1 sec   (6832 perm/sec)   p_kst 5.110000e-01   p_cons 9.054000e-01   p_joint 8.943000e-01

Outputting figure to mutsig2_images.part000000000054/EDARADD.2_707_10000_0.511_0.9054_0.8943.png
                gene_name: EDARADD
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 88 percent done.
EED
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.280068e-02	ci left: 7.385604e-01	ci right 7.556954e-01	k: 7472	n:10000
Cons ci ratio: 2.527067e-02	ci left: 6.973649e-01	ci right 7.153147e-01	k: 7064	n:10000
KS ci ratio: 4.599094e-02	ci left: 4.109985e-01	ci right 4.304477e-01	k: 4207	n:10000
EED   10000 perm   2 sec   (6439 perm/sec)   p_kst 4.207000e-01   p_cons 7.064000e-01   p_joint 7.472000e-01

Outputting figure to mutsig2_images.part000000000054/EED.2_1378_10000_0.4207_0.7064_0.7472.png
                gene_name: EED
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 90 percent done.
EEF1A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.997964e-02	ci left: 7.857354e-01	ci right 8.016931e-01	k: 7938	n:10000
Cons ci ratio: 2.382713e-02	ci left: 7.213844e-01	ci right 7.388814e-01	k: 7302	n:10000
KS ci ratio: 2.015643e-02	ci left: 7.827953e-01	ci right 7.988349e-01	k: 7909	n:10000
EEF1A1   10000 perm   2 sec   (6407 perm/sec)   p_kst 7.909000e-01   p_cons 7.302000e-01   p_joint 7.938000e-01

Outputting figure to mutsig2_images.part000000000054/EEF1A1.2_1417_10000_0.7909_0.7302_0.7938.png
                gene_name: EEF1A1
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 92 percent done.
EEF1A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.185320e-03	ci left: 9.541963e-01	ci right 9.621340e-01	k: 9583	n:10000
Cons ci ratio: 2.629793e-02	ci left: 6.804278e-01	ci right 6.986616e-01	k: 6896	n:10000
KS ci ratio: 1.365803e-01	ci left: 7.088017e-02	ci right 8.136835e-02	k: 760	n:10000
EEF1A2   10000 perm   2 sec   (6623 perm/sec)   p_kst 7.600000e-02   p_cons 6.896000e-01   p_joint 9.583000e-01

Joint ci ratio: 1.024411e-02	ci left: 8.752636e-01	ci right 8.843256e-01	k: 17597	n:20000
Cons ci ratio: 1.875471e-02	ci left: 6.794658e-01	ci right 6.923801e-01	k: 13719	n:20000
KS ci ratio: 9.870057e-02	ci left: 6.948088e-02	ci right 7.674382e-02	k: 1461	n:20000
EEF1A2   20000 perm   3 sec   (5885 perm/sec)   p_kst 7.305000e-02   p_cons 6.859500e-01   p_joint 8.798500e-01

Outputting figure to mutsig2_images.part000000000054/EEF1A2.2_1420_20000_0.07305_0.68595_0.87985.png
                gene_name: EEF1A2
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.073 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.077 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.88 

Current progress: 95 percent done.
EEF1G
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.139078e-02	ci left: 9.167762e-01	ci right 9.273764e-01	k: 9222	n:10000
KS ci ratio: 3.019958e-02	ci left: 6.179381e-01	ci right 6.369876e-01	k: 6275	n:10000
EEF1G   10000 perm   2 sec   (6255 perm/sec)   p_kst 6.275000e-01   p_cons 9.222000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000054/EEF1G.2_1354_10000_0.6275_0.9222_1.png
                gene_name: EEF1G
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
EEF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.657006e-02	ci left: 5.247648e-01	ci right 5.444151e-01	k: 5346	n:10000
Cons ci ratio: 5.929916e-02	ci left: 2.949926e-01	ci right 3.131216e-01	k: 3040	n:10000
KS ci ratio: 4.495000e-02	ci left: 4.221625e-01	ci right 4.416772e-01	k: 4319	n:10000
EEF2   10000 perm   2 sec   (5722 perm/sec)   p_kst 4.319000e-01   p_cons 3.040000e-01   p_joint 5.346000e-01

Outputting figure to mutsig2_images.part000000000054/EEF2.2_2637_10000_0.4319_0.304_0.5346.png
                gene_name: EEF2
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000054
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 54 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1545>
Subject: Job 8004041: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1545>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000055> was used as the working directory.
Started at Sun Nov 11 15:05:30 2012
Results reported at Sun Nov 11 16:21:20 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000055.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000055.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 55  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000055.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   5065.00 sec.
    Max Memory :      4779 MB
    Max Swap   :      7210 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
55
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 55
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 55: processing genes 4886 - 4976
Calculating significance of each gene.
Using projection method.
4886	EFCAB5	7.471405e-01
4887	EFCAB6	7.661217e-02
4888	EFCAB7	4.382566e-01
4889	EFEMP1	7.853236e-01
4890	EFEMP2	1
4891	EFHA1	3.332883e-01
4892	EFHA2	1.072991e-01
4893	EFHB	1
4894	EFHC1	7.477053e-01
4895	EFHC2	1
4896	EFHD1	4.253067e-01
4897	EFHD2	1
4898	EFNA1	1
4899	EFNA2	1
4900	EFNA3	5.993836e-01
4901	EFNA4	1
4902	EFNA5	1
4903	EFNB1	1.148026e-01
4904	EFNB2	5.094403e-01
4905	EFNB3	1
4906	EFR3A	9.975604e-02
4907	EFS	6.321426e-01
4908	EFTUD1	5.289720e-01
4909	EFTUD2	8.690727e-01
4910	EGF	3.262325e-01
4911	EGFL6	5.056988e-01
4912	EGFL7	1
4913	EGFL8	4.899031e-01
4914	EGFLAM	3.950655e-01
4915	EGFR	4.862969e-01
4916	EGLN1	5.387587e-01
4917	EGLN2	6.594108e-01
4918	EGLN3	2.517457e-01
4919	EGR1	7.124959e-01
4920	EGR2	8.553960e-02
4921	EGR3	3.788501e-01
4922	EGR4	1
4923	EHBP1	9.812078e-01
4924	EHBP1L1	9.709364e-01
4925	EHD1	1
4926	EHD2	7.000024e-01
4927	EHD3	4.131769e-01
4928	EHD4	3.973708e-01
4929	EHF	2.637793e-01
4930	EHHADH	1
4931	EHMT1	6.304584e-01
4932	EHMT2	9.875018e-01
4933	EI24	4.233885e-01
4934	EID1	1
4935	EID2	2.683022e-01
4936	EID2B	1
4937	EID3	1
4938	EIF1	1
4939	EIF1AD	1.725245e-01
4940	EIF1AX	1
4941	EIF1AY	1
4942	EIF1B	1.372950e-01
4943	EIF2A	6.167163e-01
4944	EIF2AK1	8.038044e-01
4945	EIF2AK2	1
4946	EIF2AK3	2.040289e-01
4947	EIF2AK4	6.399690e-01
4948	EIF2B1	2.735889e-01
4949	EIF2B2	5.355777e-01
4950	EIF2B3	1
4951	EIF2B4	7.825565e-01
4952	EIF2B5	4.499615e-01
4953	EIF2C1	8.836591e-01
4954	EIF2C2	9.328347e-01
4955	EIF2C3	9.439113e-01
4956	EIF2C4	9.705972e-01
4957	EIF2S1	1
4958	EIF2S2	7.366384e-01
4959	EIF2S3	1
4960	EIF3A	9.899921e-01
4961	EIF3B	5.963809e-01
4962	EIF3D	1
4963	EIF3E	3.252991e-02
4964	EIF3F	3.076353e-01
4965	EIF3G	7.087892e-01
4966	EIF3H	4.290159e-01
4967	EIF3I	1
4968	EIF3J	1
4969	EIF3K	2.796470e-01
4970	EIF3L	5.651627e-01
4971	EIF3M	7.825608e-01
4972	EIF4A1	1.965925e-01
4973	EIF4A2	4.684343e-01
4974	EIF4A3	1
4975	EIF4B	1.280089e-01
4976	EIF4E	1
Done

Running MutSig 2:
Scatter job 55: processing genes 4886 - 4976
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
EFCAB6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.700042e-02	ci left: 6.689428e-01	ci right 6.873533e-01	k: 6782	n:10000
Cons ci ratio: 1.892472e-02	ci left: 8.031864e-01	ci right 8.186320e-01	k: 8110	n:10000
KS ci ratio: 4.451312e-02	ci left: 4.269487e-01	ci right 4.464882e-01	k: 4367	n:10000
EFCAB6   10000 perm   3 sec   (3457 perm/sec)   p_kst 4.367000e-01   p_cons 8.110000e-01   p_joint 6.782000e-01

Outputting figure to mutsig2_images.part000000000055/EFCAB6.11_4626_10000_0.4367_0.811_0.6782.png
                gene_name: EFCAB6
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 2 percent done.
EGFLAM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.854893e-02	ci left: 1.298276e-01	ci right 1.433848e-01	k: 1365	n:10000
Cons ci ratio: 6.675939e-03	ci left: 9.684703e-01	ci right 9.750510e-01	k: 9719	n:10000
KS ci ratio: 1.352385e-01	ci left: 7.223612e-02	ci right 8.281155e-02	k: 774	n:10000
EGFLAM   10000 perm   2 sec   (4135 perm/sec)   p_kst 7.740000e-02   p_cons 9.719000e-01   p_joint 1.365000e-01

Joint ci ratio: 6.296070e-02	ci left: 1.572142e-01	ci right 1.674842e-01	k: 3246	n:20000
Cons ci ratio: 4.625586e-03	ci left: 9.706067e-01	ci right 9.751544e-01	k: 19459	n:20000
KS ci ratio: 9.702811e-02	ci left: 7.177763e-02	ci right 7.914636e-02	k: 1508	n:20000
EGFLAM   20000 perm   5 sec   (3709 perm/sec)   p_kst 7.540000e-02   p_cons 9.729500e-01   p_joint 1.623000e-01

Outputting figure to mutsig2_images.part000000000055/EGFLAM.10_3132_20000_0.0754_0.97295_0.1623.png
                gene_name: EGFLAM
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.075 
        ci_ks_bounds_left: 0.072 
       ci_ks_bounds_right: 0.079 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 4 percent done.
EHBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.247362e-02	ci left: 4.500946e-01	ci right 4.697287e-01	k: 4599	n:10000
Cons ci ratio: 5.335816e-03	ci left: 9.790923e-01	ci right 9.844218e-01	k: 9819	n:10000
KS ci ratio: 6.536699e-02	ci left: 2.557759e-01	ci right 2.731615e-01	k: 2644	n:10000
EHBP1   10000 perm   3 sec   (3976 perm/sec)   p_kst 2.644000e-01   p_cons 9.819000e-01   p_joint 4.599000e-01

Outputting figure to mutsig2_images.part000000000055/EHBP1.8_3792_10000_0.2644_0.9819_0.4599.png
                gene_name: EHBP1
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 7 percent done.
EIF2AK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.331431e-02	ci left: 2.682448e-01	ci right 2.858852e-01	k: 2770	n:10000
Cons ci ratio: 4.994475e-02	ci left: 3.715671e-01	ci right 3.907022e-01	k: 3811	n:10000
KS ci ratio: 9.148904e-02	ci left: 1.479580e-01	ci right 1.622435e-01	k: 1550	n:10000
EIF2AK3   10000 perm   2 sec   (4611 perm/sec)   p_kst 1.550000e-01   p_cons 3.811000e-01   p_joint 2.770000e-01

Outputting figure to mutsig2_images.part000000000055/EIF2AK3.8_3419_10000_0.155_0.3811_0.277.png
                gene_name: EIF2AK3
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 9 percent done.
EGFR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.484002e-01	ci left: 1.032396e-02	ci right 1.476677e-02	k: 124	n:10000
Cons ci ratio: 1.086451e+00	ci left: 6.202064e-04	ci right 2.095219e-03	k: 12	n:10000
KS ci ratio: 8.125263e-02	ci left: 1.810727e-01	ci right 1.965090e-01	k: 1887	n:10000
EGFR   10000 perm   2 sec   (4119 perm/sec)   p_kst 1.887000e-01   p_cons 1.200000e-03   p_joint 1.240000e-02

Joint ci ratio: 2.082928e-01	ci left: 1.558582e-02	ci right 1.925640e-02	k: 347	n:20000
Cons ci ratio: 8.168860e-01	ci left: 6.894885e-04	ci right 1.664942e-03	k: 22	n:20000
KS ci ratio: 5.717524e-02	ci left: 1.848307e-01	ci right 1.957595e-01	k: 3805	n:20000
EGFR   20000 perm   5 sec   (3745 perm/sec)   p_kst 1.902500e-01   p_cons 1.100000e-03   p_joint 1.735000e-02

Joint ci ratio: 1.917907e-01	ci left: 1.241520e-02	ci right 1.508019e-02	k: 411	n:30000
Cons ci ratio: 6.622033e-01	ci left: 7.849900e-04	ci right 1.583363e-03	k: 34	n:30000
KS ci ratio: 4.626865e-02	ci left: 1.885804e-01	ci right 1.975458e-01	k: 5791	n:30000
EGFR   30000 perm   8 sec   (3546 perm/sec)   p_kst 1.930333e-01   p_cons 1.133333e-03   p_joint 1.370000e-02

Joint ci ratio: 1.911895e-01	ci left: 9.405173e-03	ci right 1.141686e-02	k: 415	n:40000
Cons ci ratio: 5.654566e-01	ci left: 8.634696e-04	ci right 1.562198e-03	k: 47	n:40000
KS ci ratio: 3.975652e-02	ci left: 1.916232e-01	ci right 1.994210e-01	k: 7820	n:40000
EGFR   40000 perm   12 sec   (3450 perm/sec)   p_kst 1.955000e-01   p_cons 1.175000e-03   p_joint 1.037500e-02

Joint ci ratio: 1.937530e-01	ci left: 7.332995e-03	ci right 8.924907e-03	k: 405	n:50000
Cons ci ratio: 5.189155e-01	ci left: 8.461434e-04	ci right 1.454170e-03	k: 56	n:50000
KS ci ratio: 3.554637e-02	ci left: 1.921508e-01	ci right 1.991246e-01	k: 9781	n:50000
EGFR   50000 perm   15 sec   (3380 perm/sec)   p_kst 1.956200e-01   p_cons 1.120000e-03   p_joint 8.100000e-03

Joint ci ratio: 1.929308e-01	ci left: 6.173903e-03	ci right 7.507803e-03	k: 409	n:60000
Cons ci ratio: 4.750964e-01	ci left: 8.655029e-04	ci right 1.417913e-03	k: 67	n:60000
KS ci ratio: 3.231313e-02	ci left: 1.937742e-01	ci right 2.001551e-01	k: 11817	n:60000
EGFR   60000 perm   18 sec   (3313 perm/sec)   p_kst 1.969500e-01   p_cons 1.116667e-03   p_joint 6.816667e-03

Joint ci ratio: 1.841943e-01	ci left: 5.836284e-03	ci right 7.033753e-03	k: 449	n:70000
Cons ci ratio: 4.224417e-01	ci left: 9.700399e-04	ci right 1.501267e-03	k: 85	n:70000
KS ci ratio: 2.985909e-02	ci left: 1.946131e-01	ci right 2.005263e-01	k: 13829	n:70000
EGFR   70000 perm   22 sec   (3256 perm/sec)   p_kst 1.975571e-01   p_cons 1.214286e-03   p_joint 6.414286e-03

Joint ci ratio: 1.926254e-01	ci left: 4.653861e-03	ci right 5.657541e-03	k: 411	n:80000
Cons ci ratio: 3.898058e-01	ci left: 1.017162e-03	ci right 1.520129e-03	k: 100	n:80000
KS ci ratio: 2.788635e-02	ci left: 1.953055e-01	ci right 2.008414e-01	k: 15845	n:80000
EGFR   80000 perm   25 sec   (3205 perm/sec)   p_kst 1.980625e-01   p_cons 1.250000e-03   p_joint 5.137500e-03

Joint ci ratio: 2.173842e-01	ci left: 3.208723e-03	ci right 4.001580e-03	k: 323	n:90000
Cons ci ratio: 3.787333e-01	ci left: 9.643656e-04	ci right 1.424313e-03	k: 106	n:90000
KS ci ratio: 2.628485e-02	ci left: 1.955445e-01	ci right 2.007639e-01	k: 17833	n:90000
EGFR   90000 perm   29 sec   (3158 perm/sec)   p_kst 1.981444e-01   p_cons 1.177778e-03   p_joint 3.588889e-03

Joint ci ratio: 2.128582e-01	ci left: 3.020276e-03	ci right 3.748999e-03	k: 337	n:100000
Cons ci ratio: 3.637499e-01	ci left: 9.495334e-04	ci right 1.380242e-03	k: 115	n:100000
KS ci ratio: 2.494272e-02	ci left: 1.955937e-01	ci right 2.005439e-01	k: 19806	n:100000
EGFR   100000 perm   32 sec   (3108 perm/sec)   p_kst 1.980600e-01   p_cons 1.150000e-03   p_joint 3.370000e-03

Joint ci ratio: 2.031719e-01	ci left: 3.030086e-03	ci right 3.723779e-03	k: 370	n:110000
Cons ci ratio: 3.518263e-01	ci left: 9.294020e-04	ci right 1.334005e-03	k: 123	n:110000
KS ci ratio: 2.379742e-02	ci left: 1.955037e-01	ci right 2.002213e-01	k: 21764	n:110000
EGFR   110000 perm   36 sec   (3059 perm/sec)   p_kst 1.978545e-01   p_cons 1.118182e-03   p_joint 3.363636e-03

Joint ci ratio: 1.981733e-01	ci left: 2.927941e-03	ci right 3.579764e-03	k: 389	n:120000
Cons ci ratio: 3.311058e-01	ci left: 9.738658e-04	ci right 1.367546e-03	k: 139	n:120000
KS ci ratio: 2.278767e-02	ci left: 1.955577e-01	ci right 2.000736e-01	k: 23737	n:120000
EGFR   120000 perm   40 sec   (3004 perm/sec)   p_kst 1.978083e-01   p_cons 1.158333e-03   p_joint 3.241667e-03

Joint ci ratio: 1.928175e-01	ci left: 2.863654e-03	ci right 3.481913e-03	k: 411	n:130000
Cons ci ratio: 3.198807e-01	ci left: 9.695923e-04	ci right 1.345537e-03	k: 149	n:130000
KS ci ratio: 2.192939e-02	ci left: 1.951320e-01	ci right 1.994662e-01	k: 25648	n:130000
EGFR   130000 perm   44 sec   (2961 perm/sec)   p_kst 1.972923e-01   p_cons 1.146154e-03   p_joint 3.161538e-03

Joint ci ratio: 1.668201e-01	ci left: 3.600787e-03	ci right 4.262877e-03	k: 549	n:140000
Cons ci ratio: 2.928061e-01	ci left: 1.091598e-03	ci right 1.472398e-03	k: 178	n:140000
KS ci ratio: 2.113456e-02	ci left: 1.951683e-01	ci right 1.993442e-01	k: 27615	n:140000
EGFR   140000 perm   48 sec   (2919 perm/sec)   p_kst 1.972500e-01   p_cons 1.271429e-03   p_joint 3.921429e-03

Joint ci ratio: 1.598462e-01	ci left: 3.674064e-03	ci right 4.318675e-03	k: 598	n:150000
Cons ci ratio: 2.842056e-01	ci left: 1.086852e-03	ci right 1.452864e-03	k: 189	n:150000
KS ci ratio: 2.037571e-02	ci left: 1.958929e-01	ci right 1.999321e-01	k: 29686	n:150000
EGFR   150000 perm   52 sec   (2876 perm/sec)   p_kst 1.979067e-01   p_cons 1.260000e-03   p_joint 3.986667e-03

Joint ci ratio: 1.386818e-01	ci left: 4.624054e-03	ci right 5.319071e-03	k: 794	n:160000
Cons ci ratio: 2.770117e-01	ci left: 1.077026e-03	ci right 1.428947e-03	k: 199	n:160000
KS ci ratio: 1.975170e-02	ci left: 1.955890e-01	ci right 1.994970e-01	k: 31606	n:160000
EGFR   160000 perm   56 sec   (2837 perm/sec)   p_kst 1.975375e-01   p_cons 1.243750e-03   p_joint 4.962500e-03

Joint ci ratio: 1.348373e-01	ci left: 4.613380e-03	ci right 5.286027e-03	k: 840	n:170000
Cons ci ratio: 2.677962e-01	ci left: 1.090402e-03	ci right 1.432853e-03	k: 213	n:170000
KS ci ratio: 1.916994e-02	ci left: 1.955160e-01	ci right 1.993061e-01	k: 33559	n:170000
EGFR   170000 perm   61 sec   (2798 perm/sec)   p_kst 1.974059e-01   p_cons 1.252941e-03   p_joint 4.941176e-03

Joint ci ratio: 1.252643e-01	ci left: 5.072032e-03	ci right 5.755157e-03	k: 973	n:180000
Cons ci ratio: 2.566408e-01	ci left: 1.128448e-03	ci right 1.465721e-03	k: 232	n:180000
KS ci ratio: 1.864622e-02	ci left: 1.952920e-01	ci right 1.989733e-01	k: 35483	n:180000
EGFR   180000 perm   65 sec   (2760 perm/sec)   p_kst 1.971278e-01   p_cons 1.288889e-03   p_joint 5.405556e-03

Joint ci ratio: 1.216329e-01	ci left: 5.106027e-03	ci right 5.772357e-03	k: 1032	n:190000
Cons ci ratio: 2.492608e-01	ci left: 1.138070e-03	ci right 1.466922e-03	k: 246	n:190000
KS ci ratio: 1.816562e-02	ci left: 1.950510e-01	ci right 1.986319e-01	k: 37399	n:190000
EGFR   190000 perm   70 sec   (2718 perm/sec)   p_kst 1.968368e-01   p_cons 1.294737e-03   p_joint 5.431579e-03

Joint ci ratio: 1.192926e-01	ci left: 5.049539e-03	ci right 5.694925e-03	k: 1073	n:200000
Cons ci ratio: 2.406435e-01	ci left: 1.165646e-03	ci right 1.489085e-03	k: 264	n:200000
KS ci ratio: 1.769262e-02	ci left: 1.953286e-01	ci right 1.988202e-01	k: 39414	n:200000
EGFR   200000 perm   75 sec   (2673 perm/sec)   p_kst 1.970700e-01   p_cons 1.320000e-03   p_joint 5.365000e-03

Joint ci ratio: 1.178284e-01	ci left: 4.933826e-03	ci right 5.556142e-03	k: 1100	n:210000
Cons ci ratio: 2.362295e-01	ci left: 1.154913e-03	ci right 1.468636e-03	k: 274	n:210000
KS ci ratio: 1.726149e-02	ci left: 1.954573e-01	ci right 1.988653e-01	k: 41403	n:210000
EGFR   210000 perm   80 sec   (2640 perm/sec)   p_kst 1.971571e-01   p_cons 1.304762e-03   p_joint 5.238095e-03

Joint ci ratio: 1.157479e-01	ci left: 4.886060e-03	ci right 5.490726e-03	k: 1140	n:220000
Cons ci ratio: 2.328694e-01	ci left: 1.136643e-03	ci right 1.440378e-03	k: 282	n:220000
KS ci ratio: 1.685558e-02	ci left: 1.956660e-01	ci right 1.989966e-01	k: 43412	n:220000
EGFR   220000 perm   84 sec   (2610 perm/sec)   p_kst 1.973273e-01   p_cons 1.281818e-03   p_joint 5.181818e-03

Joint ci ratio: 1.134844e-01	ci left: 4.867887e-03	ci right 5.457733e-03	k: 1186	n:230000
Cons ci ratio: 2.411203e-01	ci left: 1.009510e-03	ci right 1.290262e-03	k: 263	n:230000
KS ci ratio: 1.650033e-02	ci left: 1.954109e-01	ci right 1.986663e-01	k: 45318	n:230000
EGFR   230000 perm   89 sec   (2579 perm/sec)   p_kst 1.970348e-01   p_cons 1.143478e-03   p_joint 5.156522e-03

Joint ci ratio: 1.126886e-01	ci left: 4.733869e-03	ci right 5.303186e-03	k: 1203	n:240000
Cons ci ratio: 2.366801e-01	ci left: 1.006620e-03	ci right 1.280657e-03	k: 273	n:240000
KS ci ratio: 1.615385e-02	ci left: 1.954270e-01	ci right 1.986137e-01	k: 47284	n:240000
EGFR   240000 perm   94 sec   (2551 perm/sec)   p_kst 1.970167e-01   p_cons 1.137500e-03   p_joint 5.012500e-03

Joint ci ratio: 1.117250e-01	ci left: 4.626142e-03	ci right 5.177432e-03	k: 1224	n:250000
Cons ci ratio: 2.324766e-01	ci left: 1.004004e-03	ci right 1.271777e-03	k: 283	n:250000
KS ci ratio: 1.583673e-02	ci left: 1.952749e-01	ci right 1.983961e-01	k: 49208	n:250000
EGFR   250000 perm   99 sec   (2522 perm/sec)   p_kst 1.968320e-01   p_cons 1.132000e-03   p_joint 4.896000e-03

Joint ci ratio: 1.108750e-01	ci left: 4.519242e-03	ci right 5.053427e-03	k: 1243	n:260000
Cons ci ratio: 2.281013e-01	ci left: 1.005256e-03	ci right 1.267607e-03	k: 294	n:260000
KS ci ratio: 1.554022e-02	ci left: 1.950815e-01	ci right 1.981406e-01	k: 51118	n:260000
EGFR   260000 perm   104 sec   (2495 perm/sec)   p_kst 1.966077e-01   p_cons 1.130769e-03   p_joint 4.780769e-03

Joint ci ratio: 1.105284e-01	ci left: 4.380655e-03	ci right 4.896734e-03	k: 1251	n:270000
Cons ci ratio: 2.217976e-01	ci left: 1.027441e-03	ci right 1.287161e-03	k: 311	n:270000
KS ci ratio: 1.525011e-02	ci left: 1.951023e-01	ci right 1.981042e-01	k: 53082	n:270000
EGFR   270000 perm   109 sec   (2467 perm/sec)   p_kst 1.966000e-01   p_cons 1.151852e-03   p_joint 4.633333e-03

Joint ci ratio: 1.087629e-01	ci left: 4.366614e-03	ci right 4.872295e-03	k: 1292	n:280000
Cons ci ratio: 2.156613e-01	ci left: 1.051513e-03	ci right 1.308991e-03	k: 329	n:280000
KS ci ratio: 1.497785e-02	ci left: 1.950759e-01	ci right 1.980233e-01	k: 55033	n:280000
EGFR   280000 perm   115 sec   (2440 perm/sec)   p_kst 1.965464e-01   p_cons 1.175000e-03   p_joint 4.614286e-03

Joint ci ratio: 1.227655e-01	ci left: 3.288308e-03	ci right 3.721707e-03	k: 1015	n:290000
Cons ci ratio: 2.115345e-01	ci left: 1.057684e-03	ci right 1.311075e-03	k: 342	n:290000
KS ci ratio: 1.472724e-02	ci left: 1.948901e-01	ci right 1.977850e-01	k: 56937	n:290000
EGFR   290000 perm   120 sec   (2414 perm/sec)   p_kst 1.963345e-01   p_cons 1.179310e-03   p_joint 3.500000e-03

Joint ci ratio: 1.239410e-01	ci left: 3.117302e-03	ci right 3.532384e-03	k: 996	n:300000
Cons ci ratio: 2.064778e-01	ci left: 1.076130e-03	ci right 1.326999e-03	k: 359	n:300000
KS ci ratio: 1.446998e-02	ci left: 1.951259e-01	ci right 1.979733e-01	k: 58964	n:300000
EGFR   300000 perm   126 sec   (2389 perm/sec)   p_kst 1.965467e-01   p_cons 1.196667e-03   p_joint 3.320000e-03

Joint ci ratio: 9.983791e-02	ci left: 4.701252e-03	ci right 5.198395e-03	k: 1533	n:310000
Cons ci ratio: 2.033941e-01	ci left: 1.075079e-03	ci right 1.321495e-03	k: 370	n:310000
KS ci ratio: 1.424625e-02	ci left: 1.948934e-01	ci right 1.976930e-01	k: 60850	n:310000
EGFR   310000 perm   131 sec   (2365 perm/sec)   p_kst 1.962903e-01   p_cons 1.193548e-03   p_joint 4.945161e-03

Joint ci ratio: 9.853118e-02	ci left: 4.679281e-03	ci right 5.167251e-03	k: 1574	n:320000
Cons ci ratio: 2.012373e-01	ci left: 1.065216e-03	ci right 1.306464e-03	k: 378	n:320000
KS ci ratio: 1.402216e-02	ci left: 1.949094e-01	ci right 1.976648e-01	k: 62811	n:320000
EGFR   320000 perm   137 sec   (2338 perm/sec)   p_kst 1.962844e-01   p_cons 1.181250e-03   p_joint 4.918750e-03

Joint ci ratio: 9.614497e-02	ci left: 4.771062e-03	ci right 5.255874e-03	k: 1653	n:330000
Cons ci ratio: 1.848701e-01	ci left: 1.234833e-03	ci right 1.489204e-03	k: 448	n:330000
KS ci ratio: 1.381296e-02	ci left: 1.948190e-01	ci right 1.975318e-01	k: 64737	n:330000
EGFR   330000 perm   143 sec   (2314 perm/sec)   p_kst 1.961727e-01   p_cons 1.357576e-03   p_joint 5.009091e-03

Joint ci ratio: 9.668217e-02	ci left: 4.579050e-03	ci right 5.047098e-03	k: 1635	n:340000
Cons ci ratio: 1.822507e-01	ci left: 1.234993e-03	ci right 1.485394e-03	k: 461	n:340000
KS ci ratio: 1.361209e-02	ci left: 1.947519e-01	ci right 1.974239e-01	k: 66669	n:340000
EGFR   340000 perm   148 sec   (2290 perm/sec)   p_kst 1.960853e-01   p_cons 1.355882e-03   p_joint 4.808824e-03

Joint ci ratio: 9.537974e-02	ci left: 4.573703e-03	ci right 5.034554e-03	k: 1680	n:350000
Cons ci ratio: 1.801197e-01	ci left: 1.229710e-03	ci right 1.475807e-03	k: 472	n:350000
KS ci ratio: 1.341244e-02	ci left: 1.948598e-01	ci right 1.974938e-01	k: 68661	n:350000
EGFR   350000 perm   155 sec   (2264 perm/sec)   p_kst 1.961743e-01   p_cons 1.348571e-03   p_joint 4.800000e-03

Joint ci ratio: 9.445908e-02	ci left: 4.536142e-03	ci right 4.988553e-03	k: 1713	n:360000
Cons ci ratio: 1.778778e-01	ci left: 1.227391e-03	ci right 1.469638e-03	k: 484	n:360000
KS ci ratio: 1.322027e-02	ci left: 1.949869e-01	ci right 1.975846e-01	k: 70662	n:360000
EGFR   360000 perm   161 sec   (2240 perm/sec)   p_kst 1.962833e-01   p_cons 1.344444e-03   p_joint 4.758333e-03

Joint ci ratio: 9.402530e-02	ci left: 4.455759e-03	ci right 4.897999e-03	k: 1729	n:370000
Cons ci ratio: 1.755409e-01	ci left: 1.227800e-03	ci right 1.466606e-03	k: 497	n:370000
KS ci ratio: 1.303558e-02	ci left: 1.951209e-01	ci right 1.976838e-01	k: 72668	n:370000
EGFR   370000 perm   167 sec   (2218 perm/sec)   p_kst 1.964000e-01   p_cons 1.343243e-03   p_joint 4.672973e-03

Joint ci ratio: 1.028901e-01	ci left: 3.609417e-03	ci right 4.003472e-03	k: 1445	n:380000
Cons ci ratio: 1.724509e-01	ci left: 1.240796e-03	ci right 1.477439e-03	k: 515	n:380000
KS ci ratio: 1.286324e-02	ci left: 1.951300e-01	ci right 1.976588e-01	k: 74629	n:380000
EGFR   380000 perm   173 sec   (2196 perm/sec)   p_kst 1.963921e-01   p_cons 1.355263e-03   p_joint 3.802632e-03

Joint ci ratio: 1.012565e-01	ci left: 3.634306e-03	ci right 4.024405e-03	k: 1492	n:390000
Cons ci ratio: 1.698374e-01	ci left: 1.248249e-03	ci right 1.482337e-03	k: 531	n:390000
KS ci ratio: 1.269148e-02	ci left: 1.952897e-01	ci right 1.977866e-01	k: 76649	n:390000
EGFR   390000 perm   179 sec   (2174 perm/sec)   p_kst 1.965359e-01   p_cons 1.361538e-03   p_joint 3.825641e-03

Joint ci ratio: 1.002222e-01	ci left: 3.618994e-03	ci right 4.003249e-03	k: 1523	n:400000
Cons ci ratio: 1.676458e-01	ci left: 1.250565e-03	ci right 1.481755e-03	k: 545	n:400000
KS ci ratio: 1.253832e-02	ci left: 1.951424e-01	ci right 1.976070e-01	k: 78549	n:400000
EGFR   400000 perm   186 sec   (2154 perm/sec)   p_kst 1.963725e-01   p_cons 1.362500e-03   p_joint 3.807500e-03

Joint ci ratio: 1.077615e-01	ci left: 3.043664e-03	ci right 3.392684e-03	k: 1318	n:410000
Cons ci ratio: 1.909508e-01	ci left: 9.287947e-04	ci right 1.127146e-03	k: 420	n:410000
KS ci ratio: 1.238617e-02	ci left: 1.951143e-01	ci right 1.975485e-01	k: 80495	n:410000
EGFR   410000 perm   192 sec   (2133 perm/sec)   p_kst 1.963293e-01   p_cons 1.024390e-03   p_joint 3.214634e-03

Joint ci ratio: 8.705207e-02	ci left: 4.595536e-03	ci right 5.016103e-03	k: 2017	n:420000
Cons ci ratio: 1.891625e-01	ci left: 9.248217e-04	ci right 1.120263e-03	k: 428	n:420000
KS ci ratio: 1.223897e-02	ci left: 1.950997e-01	ci right 1.975045e-01	k: 82446	n:420000
EGFR   420000 perm   199 sec   (2112 perm/sec)   p_kst 1.963000e-01   p_cons 1.019048e-03   p_joint 4.802381e-03

Joint ci ratio: 8.298223e-02	ci left: 4.948484e-03	ci right 5.379156e-03	k: 2219	n:430000
Cons ci ratio: 1.863593e-01	ci left: 9.321261e-04	ci right 1.125861e-03	k: 441	n:430000
KS ci ratio: 1.209430e-02	ci left: 1.951531e-01	ci right 1.975300e-01	k: 84426	n:430000
EGFR   430000 perm   206 sec   (2091 perm/sec)   p_kst 1.963395e-01   p_cons 1.025581e-03   p_joint 5.160465e-03

Joint ci ratio: 8.202708e-02	ci left: 4.951762e-03	ci right 5.377521e-03	k: 2271	n:440000
Cons ci ratio: 1.844908e-01	ci left: 9.304464e-04	ci right 1.121677e-03	k: 450	n:440000
KS ci ratio: 1.195887e-02	ci left: 1.950932e-01	ci right 1.974426e-01	k: 86357	n:440000
EGFR   440000 perm   212 sec   (2074 perm/sec)   p_kst 1.962659e-01   p_cons 1.022727e-03   p_joint 5.161364e-03

Joint ci ratio: 8.135084e-02	ci left: 4.924440e-03	ci right 5.344193e-03	k: 2309	n:450000
Cons ci ratio: 1.816915e-01	ci left: 9.394555e-04	ci right 1.129285e-03	k: 464	n:450000
KS ci ratio: 1.182539e-02	ci left: 1.951026e-01	ci right 1.974257e-01	k: 88318	n:450000
EGFR   450000 perm   220 sec   (2049 perm/sec)   p_kst 1.962622e-01   p_cons 1.031111e-03   p_joint 5.131111e-03

Joint ci ratio: 8.196386e-02	ci left: 4.744965e-03	ci right 5.152613e-03	k: 2275	n:460000
Cons ci ratio: 1.795797e-01	ci left: 9.418645e-04	ci right 1.129729e-03	k: 475	n:460000
KS ci ratio: 1.169571e-02	ci left: 1.951270e-01	ci right 1.974247e-01	k: 90286	n:460000
EGFR   460000 perm   227 sec   (2029 perm/sec)   p_kst 1.962739e-01   p_cons 1.032609e-03   p_joint 4.945652e-03

Joint ci ratio: 8.153732e-02	ci left: 4.694023e-03	ci right 5.095097e-03	k: 2299	n:470000
Cons ci ratio: 1.779060e-01	ci left: 9.401170e-04	ci right 1.125697e-03	k: 484	n:470000
KS ci ratio: 1.156826e-02	ci left: 1.952035e-01	ci right 1.974769e-01	k: 92279	n:470000
EGFR   470000 perm   234 sec   (2010 perm/sec)   p_kst 1.963383e-01   p_cons 1.029787e-03   p_joint 4.891489e-03

Joint ci ratio: 8.073423e-02	ci left: 4.690119e-03	ci right 5.086727e-03	k: 2345	n:480000
Cons ci ratio: 1.748665e-01	ci left: 9.543849e-04	ci right 1.139223e-03	k: 501	n:480000
KS ci ratio: 1.144836e-02	ci left: 1.951813e-01	ci right 1.974307e-01	k: 94226	n:480000
EGFR   480000 perm   241 sec   (1992 perm/sec)   p_kst 1.963042e-01   p_cons 1.043750e-03   p_joint 4.885417e-03

Joint ci ratio: 7.983710e-02	ci left: 4.700395e-03	ci right 5.093249e-03	k: 2398	n:490000
Cons ci ratio: 1.731505e-01	ci left: 9.544270e-04	ci right 1.137269e-03	k: 511	n:490000
KS ci ratio: 1.133168e-02	ci left: 1.951724e-01	ci right 1.973986e-01	k: 96179	n:490000
EGFR   490000 perm   248 sec   (1975 perm/sec)   p_kst 1.962837e-01   p_cons 1.042857e-03   p_joint 4.893878e-03

Joint ci ratio: 7.942625e-02	ci left: 4.655387e-03	ci right 5.042385e-03	k: 2423	n:500000
Cons ci ratio: 1.709928e-01	ci left: 9.602190e-04	ci right 1.141642e-03	k: 524	n:500000
KS ci ratio: 1.121849e-02	ci left: 1.951639e-01	ci right 1.973676e-01	k: 98132	n:500000
EGFR   500000 perm   255 sec   (1959 perm/sec)   p_kst 1.962640e-01   p_cons 1.048000e-03   p_joint 4.846000e-03

Joint ci ratio: 7.866737e-02	ci left: 4.654440e-03	ci right 5.037493e-03	k: 2470	n:510000
Cons ci ratio: 1.686004e-01	ci left: 9.695535e-04	ci right 1.149917e-03	k: 539	n:510000
KS ci ratio: 1.110656e-02	ci left: 1.952146e-01	ci right 1.973967e-01	k: 100115	n:510000
EGFR   510000 perm   262 sec   (1944 perm/sec)   p_kst 1.963039e-01   p_cons 1.056863e-03   p_joint 4.843137e-03

Joint ci ratio: 7.915530e-02	ci left: 4.508365e-03	ci right 4.881802e-03	k: 2440	n:520000
Cons ci ratio: 1.670608e-01	ci left: 9.693313e-04	ci right 1.147841e-03	k: 549	n:520000
KS ci ratio: 1.099945e-02	ci left: 1.952192e-01	ci right 1.973803e-01	k: 102075	n:520000
EGFR   520000 perm   270 sec   (1929 perm/sec)   p_kst 1.962981e-01   p_cons 1.055769e-03   p_joint 4.692308e-03

Joint ci ratio: 6.709089e-02	ci left: 6.185216e-03	ci right 6.616433e-03	k: 3391	n:530000
Cons ci ratio: 1.643912e-01	ci left: 9.835963e-04	ci right 1.161553e-03	k: 567	n:530000
KS ci ratio: 1.089519e-02	ci left: 1.952295e-01	ci right 1.973701e-01	k: 104038	n:530000
EGFR   530000 perm   277 sec   (1915 perm/sec)   p_kst 1.962981e-01   p_cons 1.069811e-03   p_joint 6.398113e-03

Joint ci ratio: 6.270525e-02	ci left: 6.959813e-03	ci right 7.412165e-03	k: 3879	n:540000
Cons ci ratio: 1.624015e-01	ci left: 9.902477e-04	ci right 1.167027e-03	k: 581	n:540000
KS ci ratio: 1.079770e-02	ci left: 1.951267e-01	ci right 1.972469e-01	k: 105940	n:540000
EGFR   540000 perm   284 sec   (1900 perm/sec)   p_kst 1.961852e-01   p_cons 1.075926e-03   p_joint 7.183333e-03

Joint ci ratio: 6.237031e-02	ci left: 6.908435e-03	ci right 7.354963e-03	k: 3921	n:550000
Cons ci ratio: 1.603477e-01	ci left: 9.984149e-04	ci right 1.174181e-03	k: 596	n:550000
KS ci ratio: 1.069859e-02	ci left: 1.951512e-01	ci right 1.972520e-01	k: 107910	n:550000
EGFR   550000 perm   292 sec   (1886 perm/sec)   p_kst 1.962000e-01   p_cons 1.083636e-03   p_joint 7.129091e-03

Joint ci ratio: 6.455683e-02	ci left: 6.329846e-03	ci right 6.753855e-03	k: 3662	n:560000
Cons ci ratio: 1.587599e-01	ci left: 1.001159e-03	ci right 1.175497e-03	k: 608	n:560000
KS ci ratio: 1.059808e-02	ci left: 1.952960e-01	ci right 1.973786e-01	k: 109948	n:560000
EGFR   560000 perm   299 sec   (1871 perm/sec)   p_kst 1.963357e-01   p_cons 1.085714e-03   p_joint 6.539286e-03

Joint ci ratio: 6.521785e-02	ci left: 6.092779e-03	ci right 6.505245e-03	k: 3589	n:570000
Cons ci ratio: 1.570918e-01	ci left: 1.005501e-03	ci right 1.178582e-03	k: 621	n:570000
KS ci ratio: 1.050688e-02	ci left: 1.952398e-01	ci right 1.973037e-01	k: 111874	n:570000
EGFR   570000 perm   307 sec   (1855 perm/sec)   p_kst 1.962702e-01   p_cons 1.089474e-03   p_joint 6.296491e-03

Joint ci ratio: 6.543266e-02	ci left: 5.948710e-03	ci right 6.352799e-03	k: 3566	n:580000
Cons ci ratio: 1.554751e-01	ci left: 1.009702e-03	ci right 1.181551e-03	k: 634	n:580000
KS ci ratio: 1.041590e-02	ci left: 1.952492e-01	ci right 1.972952e-01	k: 113837	n:580000
EGFR   580000 perm   316 sec   (1838 perm/sec)   p_kst 1.962707e-01   p_cons 1.093103e-03   p_joint 6.148276e-03

Joint ci ratio: 6.488927e-02	ci left: 5.947922e-03	ci right 6.348476e-03	k: 3626	n:590000
Cons ci ratio: 1.542653e-01	ci left: 1.008881e-03	ci right 1.179130e-03	k: 644	n:590000
KS ci ratio: 1.033134e-02	ci left: 1.951332e-01	ci right 1.971613e-01	k: 115726	n:590000
EGFR   590000 perm   323 sec   (1824 perm/sec)   p_kst 1.961458e-01   p_cons 1.091525e-03   p_joint 6.145763e-03

Joint ci ratio: 6.459762e-02	ci left: 5.902895e-03	ci right 6.298563e-03	k: 3659	n:600000
Cons ci ratio: 1.534355e-01	ci left: 1.003283e-03	ci right 1.171594e-03	k: 651	n:600000
KS ci ratio: 1.024367e-02	ci left: 1.951792e-01	ci right 1.971904e-01	k: 117710	n:600000
EGFR   600000 perm   331 sec   (1810 perm/sec)   p_kst 1.961833e-01   p_cons 1.085000e-03   p_joint 6.098333e-03

Joint ci ratio: 6.416143e-02	ci left: 5.886772e-03	ci right 6.278596e-03	k: 3709	n:610000
Cons ci ratio: 1.532018e-01	ci left: 9.899884e-04	ci right 1.155792e-03	k: 653	n:610000
KS ci ratio: 1.015792e-02	ci left: 1.952319e-01	ci right 1.972268e-01	k: 119699	n:610000
EGFR   610000 perm   340 sec   (1794 perm/sec)   p_kst 1.962279e-01   p_cons 1.070492e-03   p_joint 6.080328e-03

Joint ci ratio: 6.368286e-02	ci left: 5.880703e-03	ci right 6.269095e-03	k: 3765	n:620000
Cons ci ratio: 1.521586e-01	ci left: 9.879824e-04	ci right 1.152221e-03	k: 662	n:620000
KS ci ratio: 1.007976e-02	ci left: 1.951123e-01	ci right 1.970905e-01	k: 121582	n:620000
EGFR   620000 perm   348 sec   (1779 perm/sec)   p_kst 1.961000e-01   p_cons 1.067742e-03   p_joint 6.072581e-03

Joint ci ratio: 6.345750e-02	ci left: 5.829529e-03	ci right 6.213130e-03	k: 3792	n:630000
Cons ci ratio: 1.512492e-01	ci left: 9.845164e-04	ci right 1.147112e-03	k: 670	n:630000
KS ci ratio: 9.999792e-03	ci left: 1.951091e-01	ci right 1.970715e-01	k: 123536	n:630000
EGFR   630000 perm   357 sec   (1766 perm/sec)   p_kst 1.960889e-01   p_cons 1.063492e-03   p_joint 6.019048e-03

Joint ci ratio: 6.343528e-02	ci left: 5.743048e-03	ci right 6.120820e-03	k: 3795	n:640000
Cons ci ratio: 1.498047e-01	ci left: 9.886809e-04	ci right 1.150265e-03	k: 683	n:640000
KS ci ratio: 9.919439e-03	ci left: 1.951778e-01	ci right 1.971250e-01	k: 125536	n:640000
EGFR   640000 perm   365 sec   (1754 perm/sec)   p_kst 1.961500e-01   p_cons 1.067187e-03   p_joint 5.929688e-03

Joint ci ratio: 6.330413e-02	ci left: 5.678913e-03	ci right 6.051666e-03	k: 3811	n:650000
Cons ci ratio: 1.487216e-01	ci left: 9.882804e-04	ci right 1.148527e-03	k: 693	n:650000
KS ci ratio: 9.841856e-03	ci left: 1.952167e-01	ci right 1.971490e-01	k: 127518	n:650000
EGFR   650000 perm   373 sec   (1742 perm/sec)   p_kst 1.961815e-01   p_cons 1.066154e-03   p_joint 5.863077e-03

Joint ci ratio: 6.289342e-02	ci left: 5.667430e-03	ci right 6.036928e-03	k: 3861	n:660000
Cons ci ratio: 1.475568e-01	ci left: 9.893554e-04	ci right 1.148409e-03	k: 704	n:660000
KS ci ratio: 9.766347e-03	ci left: 1.952455e-01	ci right 1.971632e-01	k: 129494	n:660000
EGFR   660000 perm   382 sec   (1729 perm/sec)   p_kst 1.962030e-01   p_cons 1.066667e-03   p_joint 5.850000e-03

Joint ci ratio: 6.239442e-02	ci left: 5.673930e-03	ci right 6.040810e-03	k: 3923	n:670000
Cons ci ratio: 1.467269e-01	ci left: 9.860895e-04	ci right 1.143649e-03	k: 712	n:670000
KS ci ratio: 9.691129e-03	ci left: 1.953197e-01	ci right 1.972232e-01	k: 131501	n:670000
EGFR   670000 perm   390 sec   (1717 perm/sec)   p_kst 1.962701e-01   p_cons 1.062687e-03   p_joint 5.855224e-03

Joint ci ratio: 6.258993e-02	ci left: 5.555737e-03	ci right 5.916141e-03	k: 3899	n:680000
Cons ci ratio: 1.452070e-01	ci left: 9.928416e-04	ci right 1.149694e-03	k: 727	n:680000
KS ci ratio: 9.619639e-03	ci left: 1.953257e-01	ci right 1.972152e-01	k: 133463	n:680000
EGFR   680000 perm   399 sec   (1704 perm/sec)   p_kst 1.962691e-01   p_cons 1.069118e-03   p_joint 5.733824e-03

Joint ci ratio: 6.222456e-02	ci left: 5.540844e-03	ci right 5.898108e-03	k: 3945	n:690000
Cons ci ratio: 1.445142e-01	ci left: 9.882297e-04	ci right 1.143544e-03	k: 734	n:690000
KS ci ratio: 9.551463e-03	ci left: 1.952737e-01	ci right 1.971492e-01	k: 135385	n:690000
EGFR   690000 perm   408 sec   (1691 perm/sec)   p_kst 1.962101e-01   p_cons 1.063768e-03   p_joint 5.717391e-03

Joint ci ratio: 7.291985e-02	ci left: 3.961467e-03	ci right 4.262659e-03	k: 2877	n:700000
Cons ci ratio: 1.433486e-01	ci left: 9.906377e-04	ci right 1.144968e-03	k: 746	n:700000
KS ci ratio: 9.273400e-03	ci left: 2.024133e-01	ci right 2.043005e-01	k: 142349	n:700000
EGFR   700000 perm   417 sec   (1679 perm/sec)   p_kst 2.033557e-01   p_cons 1.065714e-03   p_joint 4.110000e-03

Joint ci ratio: 7.241839e-02	ci left: 3.960986e-03	ci right 4.259984e-03	k: 2917	n:710000
Cons ci ratio: 1.420236e-01	ci left: 9.956997e-04	ci right 1.149263e-03	k: 760	n:710000
KS ci ratio: 9.205165e-03	ci left: 2.025148e-01	ci right 2.043890e-01	k: 144450	n:710000
EGFR   710000 perm   426 sec   (1668 perm/sec)   p_kst 2.034507e-01   p_cons 1.070423e-03   p_joint 4.108451e-03

Joint ci ratio: 7.196378e-02	ci left: 3.956433e-03	ci right 4.253134e-03	k: 2954	n:720000
Cons ci ratio: 1.410081e-01	ci left: 9.966074e-04	ci right 1.149119e-03	k: 771	n:720000
KS ci ratio: 9.143349e-03	ci left: 2.024388e-01	ci right 2.042997e-01	k: 146425	n:720000
EGFR   720000 perm   435 sec   (1656 perm/sec)   p_kst 2.033681e-01   p_cons 1.070833e-03   p_joint 4.102778e-03

Joint ci ratio: 7.142182e-02	ci left: 3.962775e-03	ci right 4.257620e-03	k: 2999	n:730000
Cons ci ratio: 1.397464e-01	ci left: 1.001460e-03	ci right 1.153229e-03	k: 785	n:730000
KS ci ratio: 9.080688e-03	ci left: 2.024388e-01	ci right 2.042868e-01	k: 148454	n:730000
EGFR   730000 perm   444 sec   (1645 perm/sec)   p_kst 2.033616e-01   p_cons 1.075342e-03   p_joint 4.108219e-03

Joint ci ratio: 6.681661e-02	ci left: 4.474998e-03	ci right 4.785656e-03	k: 3425	n:740000
Cons ci ratio: 1.388659e-01	ci left: 1.000969e-03	ci right 1.151629e-03	k: 795	n:740000
KS ci ratio: 9.020012e-03	ci left: 2.024132e-01	ci right 2.042486e-01	k: 150464	n:740000
EGFR   740000 perm   453 sec   (1634 perm/sec)   p_kst 2.033297e-01   p_cons 1.074324e-03   p_joint 4.628378e-03

Joint ci ratio: 6.655573e-02	ci left: 4.450729e-03	ci right 4.758449e-03	k: 3452	n:750000
Cons ci ratio: 1.380876e-01	ci left: 9.992071e-04	ci right 1.148689e-03	k: 804	n:750000
KS ci ratio: 8.962713e-03	ci left: 2.023098e-01	ci right 2.041325e-01	k: 152415	n:750000
EGFR   750000 perm   462 sec   (1623 perm/sec)   p_kst 2.032200e-01   p_cons 1.072000e-03   p_joint 4.602667e-03

Joint ci ratio: 6.603153e-02	ci left: 4.463337e-03	ci right 4.769405e-03	k: 3507	n:760000
Cons ci ratio: 1.374914e-01	ci left: 9.949525e-04	ci right 1.143103e-03	k: 811	n:760000
KS ci ratio: 8.903018e-03	ci left: 2.023352e-01	ci right 2.041460e-01	k: 154462	n:760000
EGFR   760000 perm   472 sec   (1611 perm/sec)   p_kst 2.032395e-01   p_cons 1.067105e-03   p_joint 4.614474e-03

Joint ci ratio: 6.579840e-02	ci left: 4.437302e-03	ci right 4.740470e-03	k: 3532	n:770000
Cons ci ratio: 1.365695e-01	ci left: 9.958271e-04	ci right 1.143033e-03	k: 822	n:770000
KS ci ratio: 8.845706e-03	ci left: 2.023160e-01	ci right 2.041148e-01	k: 156475	n:770000
EGFR   770000 perm   481 sec   (1600 perm/sec)   p_kst 2.032143e-01   p_cons 1.067532e-03   p_joint 4.587013e-03

Joint ci ratio: 6.586592e-02	ci left: 4.371582e-03	ci right 4.670578e-03	k: 3525	n:780000
Cons ci ratio: 1.356658e-01	ci left: 9.966824e-04	ci right 1.142961e-03	k: 833	n:780000
KS ci ratio: 8.789486e-03	ci left: 2.022973e-01	ci right 2.040844e-01	k: 158488	n:780000
EGFR   780000 perm   491 sec   (1589 perm/sec)   p_kst 2.031897e-01   p_cons 1.067949e-03   p_joint 4.519231e-03

Joint ci ratio: 6.584906e-02	ci left: 4.318732e-03	ci right 4.614034e-03	k: 3527	n:790000
Cons ci ratio: 1.343034e-01	ci left: 1.004859e-03	ci right 1.150738e-03	k: 850	n:790000
KS ci ratio: 8.733642e-03	ci left: 2.023043e-01	ci right 2.040801e-01	k: 160521	n:790000
EGFR   790000 perm   500 sec   (1579 perm/sec)   p_kst 2.031911e-01   p_cons 1.075949e-03   p_joint 4.464557e-03

Joint ci ratio: 6.545147e-02	ci left: 4.317615e-03	ci right 4.610991e-03	k: 3570	n:800000
Cons ci ratio: 1.332890e-01	ci left: 1.008004e-03	ci right 1.153147e-03	k: 863	n:800000
KS ci ratio: 8.679988e-03	ci left: 2.022688e-01	ci right 2.040334e-01	k: 162520	n:800000
EGFR   800000 perm   510 sec   (1568 perm/sec)   p_kst 2.031500e-01   p_cons 1.078750e-03   p_joint 4.462500e-03

Joint ci ratio: 6.528821e-02	ci left: 4.286168e-03	ci right 4.576653e-03	k: 3588	n:810000
Cons ci ratio: 1.325243e-01	ci left: 1.007495e-03	ci right 1.151667e-03	k: 873	n:810000
KS ci ratio: 8.625897e-03	ci left: 2.022872e-01	ci right 2.040409e-01	k: 164562	n:810000
EGFR   810000 perm   520 sec   (1557 perm/sec)   p_kst 2.031630e-01   p_cons 1.077778e-03   p_joint 4.429630e-03

Joint ci ratio: 6.299513e-02	ci left: 4.551906e-03	ci right 4.849171e-03	k: 3853	n:820000
Cons ci ratio: 1.316982e-01	ci left: 1.008180e-03	ci right 1.151480e-03	k: 884	n:820000
KS ci ratio: 8.573192e-03	ci left: 2.022906e-01	ci right 2.040335e-01	k: 166592	n:820000
EGFR   820000 perm   531 sec   (1544 perm/sec)   p_kst 2.031610e-01   p_cons 1.078049e-03   p_joint 4.698780e-03

Joint ci ratio: 6.273579e-02	ci left: 4.535010e-03	ci right 4.829909e-03	k: 3885	n:830000
Cons ci ratio: 1.310337e-01	ci left: 1.006520e-03	ci right 1.148806e-03	k: 893	n:830000
KS ci ratio: 8.522424e-03	ci left: 2.022566e-01	ci right 2.039889e-01	k: 168591	n:830000
EGFR   830000 perm   541 sec   (1534 perm/sec)   p_kst 2.031217e-01   p_cons 1.075904e-03   p_joint 4.680723e-03

Joint ci ratio: 6.235980e-02	ci left: 4.536100e-03	ci right 4.829237e-03	k: 3932	n:840000
Cons ci ratio: 1.302349e-01	ci left: 1.007205e-03	ci right 1.148653e-03	k: 904	n:840000
KS ci ratio: 8.471769e-03	ci left: 2.022532e-01	ci right 2.039751e-01	k: 170615	n:840000
EGFR   840000 perm   551 sec   (1524 perm/sec)   p_kst 2.031131e-01   p_cons 1.076190e-03   p_joint 4.680952e-03

Joint ci ratio: 6.219493e-02	ci left: 4.507053e-03	ci right 4.797515e-03	k: 3953	n:850000
Cons ci ratio: 1.295214e-01	ci left: 1.006738e-03	ci right 1.147286e-03	k: 914	n:850000
KS ci ratio: 8.423537e-03	ci left: 2.021911e-01	ci right 2.039027e-01	k: 172589	n:850000
EGFR   850000 perm   561 sec   (1515 perm/sec)   p_kst 2.030459e-01   p_cons 1.075294e-03   p_joint 4.650588e-03

Joint ci ratio: 6.208630e-02	ci left: 4.470669e-03	ci right 4.758265e-03	k: 3967	n:860000
Cons ci ratio: 1.287497e-01	ci left: 1.007409e-03	ci right 1.147149e-03	k: 925	n:860000
KS ci ratio: 8.375637e-03	ci left: 2.021491e-01	ci right 2.038505e-01	k: 174579	n:860000
EGFR   860000 perm   571 sec   (1505 perm/sec)   p_kst 2.029988e-01   p_cons 1.075581e-03   p_joint 4.612791e-03

Joint ci ratio: 6.217459e-02	ci left: 4.406830e-03	ci right 4.690737e-03	k: 3956	n:870000
Cons ci ratio: 1.282661e-01	ci left: 1.003617e-03	ci right 1.142268e-03	k: 932	n:870000
KS ci ratio: 8.325854e-03	ci left: 2.022126e-01	ci right 2.039043e-01	k: 176660	n:870000
EGFR   870000 perm   582 sec   (1496 perm/sec)   p_kst 2.030575e-01   p_cons 1.071264e-03   p_joint 4.547126e-03

Joint ci ratio: 6.204247e-02	ci left: 4.375768e-03	ci right 4.657054e-03	k: 3973	n:880000
Cons ci ratio: 1.275843e-01	ci left: 1.003212e-03	ci right 1.141015e-03	k: 942	n:880000
KS ci ratio: 8.278168e-03	ci left: 2.022270e-01	ci right 2.039091e-01	k: 178699	n:880000
EGFR   880000 perm   592 sec   (1487 perm/sec)   p_kst 2.030670e-01   p_cons 1.070455e-03   p_joint 4.514773e-03

Joint ci ratio: 6.172502e-02	ci left: 4.371957e-03	ci right 4.651508e-03	k: 4014	n:890000
Cons ci ratio: 1.264491e-01	ci left: 1.010434e-03	ci right 1.147902e-03	k: 959	n:890000
KS ci ratio: 8.232893e-03	ci left: 2.021782e-01	ci right 2.038507e-01	k: 180682	n:890000
EGFR   890000 perm   602 sec   (1477 perm/sec)   p_kst 2.030135e-01   p_cons 1.077528e-03   p_joint 4.510112e-03

Joint ci ratio: 6.145807e-02	ci left: 4.361669e-03	ci right 4.639313e-03	k: 4049	n:900000
Cons ci ratio: 1.259909e-01	ci left: 1.006740e-03	ci right 1.143171e-03	k: 966	n:900000
KS ci ratio: 8.187341e-03	ci left: 2.021705e-01	ci right 2.038336e-01	k: 182701	n:900000
EGFR   900000 perm   613 sec   (1468 perm/sec)   p_kst 2.030011e-01   p_cons 1.073333e-03   p_joint 4.498889e-03

Joint ci ratio: 6.013890e-02	ci left: 4.507462e-03	ci right 4.788014e-03	k: 4228	n:910000
Cons ci ratio: 1.254731e-01	ci left: 1.004191e-03	ci right 1.139676e-03	k: 974	n:910000
KS ci ratio: 8.142591e-03	ci left: 2.021608e-01	ci right 2.038147e-01	k: 184718	n:910000
EGFR   910000 perm   624 sec   (1459 perm/sec)   p_kst 2.029868e-01   p_cons 1.070330e-03   p_joint 4.646154e-03

Joint ci ratio: 5.999807e-02	ci left: 4.479878e-03	ci right 4.758038e-03	k: 4248	n:920000
Cons ci ratio: 1.248981e-01	ci left: 1.002752e-03	ci right 1.137377e-03	k: 983	n:920000
KS ci ratio: 8.097914e-03	ci left: 2.021774e-01	ci right 2.038223e-01	k: 186759	n:920000
EGFR   920000 perm   634 sec   (1450 perm/sec)   p_kst 2.029989e-01   p_cons 1.068478e-03   p_joint 4.617391e-03

Joint ci ratio: 5.988640e-02	ci left: 4.448652e-03	ci right 4.724340e-03	k: 4264	n:930000
Cons ci ratio: 1.243937e-01	ci left: 1.000304e-03	ci right 1.134018e-03	k: 991	n:930000
KS ci ratio: 8.055036e-03	ci left: 2.021507e-01	ci right 2.037866e-01	k: 188760	n:930000
EGFR   930000 perm   645 sec   (1441 perm/sec)   p_kst 2.029677e-01   p_cons 1.065591e-03   p_joint 4.584946e-03

Joint ci ratio: 5.955215e-02	ci left: 4.451627e-03	ci right 4.725907e-03	k: 4312	n:940000
Cons ci ratio: 1.234021e-01	ci left: 1.006156e-03	ci right 1.139502e-03	k: 1007	n:940000
KS ci ratio: 8.011435e-03	ci left: 2.021809e-01	ci right 2.038082e-01	k: 190814	n:940000
EGFR   940000 perm   656 sec   (1432 perm/sec)   p_kst 2.029936e-01   p_cons 1.071277e-03   p_joint 4.587234e-03

Joint ci ratio: 5.792344e-02	ci left: 4.658890e-03	ci right 4.937827e-03	k: 4557	n:950000
Cons ci ratio: 1.229761e-01	ci left: 1.002706e-03	ci right 1.135103e-03	k: 1014	n:950000
KS ci ratio: 7.967187e-03	ci left: 2.022651e-01	ci right 2.038841e-01	k: 192920	n:950000
EGFR   950000 perm   667 sec   (1423 perm/sec)   p_kst 2.030737e-01   p_cons 1.067368e-03   p_joint 4.796842e-03

Joint ci ratio: 5.770271e-02	ci left: 4.646290e-03	ci right 4.923378e-03	k: 4592	n:960000
Cons ci ratio: 1.224945e-01	ci left: 1.000339e-03	ci right 1.131868e-03	k: 1022	n:960000
KS ci ratio: 7.924709e-03	ci left: 2.023050e-01	ci right 2.039156e-01	k: 194985	n:960000
EGFR   960000 perm   679 sec   (1414 perm/sec)   p_kst 2.031094e-01   p_cons 1.064583e-03   p_joint 4.783333e-03

Joint ci ratio: 5.743463e-02	ci left: 4.642082e-03	ci right 4.917589e-03	k: 4635	n:970000
Cons ci ratio: 1.220778e-01	ci left: 9.970217e-04	ci right 1.127637e-03	k: 1029	n:970000
KS ci ratio: 7.882426e-03	ci left: 2.023636e-01	ci right 2.039660e-01	k: 197069	n:970000
EGFR   970000 perm   690 sec   (1406 perm/sec)   p_kst 2.031639e-01   p_cons 1.060825e-03   p_joint 4.778351e-03

Joint ci ratio: 5.744849e-02	ci left: 4.592699e-03	ci right 4.865343e-03	k: 4633	n:980000
Cons ci ratio: 1.215480e-01	ci left: 9.957518e-04	ci right 1.125594e-03	k: 1038	n:980000
KS ci ratio: 7.842543e-03	ci left: 2.023497e-01	ci right 2.039439e-01	k: 199083	n:980000
EGFR   980000 perm   701 sec   (1398 perm/sec)   p_kst 2.031459e-01   p_cons 1.059184e-03   p_joint 4.727551e-03

Joint ci ratio: 5.895127e-02	ci left: 4.315356e-03	ci right 4.578466e-03	k: 4401	n:990000
Cons ci ratio: 1.210250e-01	ci left: 9.945088e-04	ci right 1.123591e-03	k: 1047	n:990000
KS ci ratio: 8.014263e-03	ci left: 1.938478e-01	ci right 1.954086e-01	k: 192681	n:990000
EGFR   990000 perm   712 sec   (1390 perm/sec)   p_kst 1.946273e-01   p_cons 1.057576e-03   p_joint 4.445455e-03

Joint ci ratio: 5.912144e-02	ci left: 4.247567e-03	ci right 4.507317e-03	k: 4376	n:1000000
Cons ci ratio: 1.206803e-01	ci left: 9.903822e-04	ci right 1.118536e-03	k: 1053	n:1000000
KS ci ratio: 7.974556e-03	ci left: 1.938334e-01	ci right 1.953863e-01	k: 194609	n:1000000
EGFR   1000000 perm   724 sec   (1382 perm/sec)   p_kst 1.946090e-01   p_cons 1.053000e-03   p_joint 4.376000e-03

Joint ci ratio: 5.881982e-02	ci left: 4.249409e-03	ci right 4.507901e-03	k: 4421	n:1010000
Cons ci ratio: 1.198304e-01	ci left: 9.949813e-04	ci right 1.122759e-03	k: 1068	n:1010000
KS ci ratio: 7.934631e-03	ci left: 1.938510e-01	ci right 1.953963e-01	k: 196569	n:1010000
EGFR   1010000 perm   736 sec   (1373 perm/sec)   p_kst 1.946228e-01   p_cons 1.057426e-03   p_joint 4.377228e-03

Joint ci ratio: 5.856887e-02	ci left: 4.244456e-03	ci right 4.501508e-03	k: 4459	n:1020000
Cons ci ratio: 1.193847e-01	ci left: 9.928350e-04	ci right 1.119830e-03	k: 1076	n:1020000
KS ci ratio: 7.895473e-03	ci left: 1.938615e-01	ci right 1.953991e-01	k: 198522	n:1020000
EGFR   1020000 perm   747 sec   (1365 perm/sec)   p_kst 1.946294e-01   p_cons 1.054902e-03   p_joint 4.371569e-03

Joint ci ratio: 5.829508e-02	ci left: 4.243429e-03	ci right 4.499176e-03	k: 4501	n:1030000
Cons ci ratio: 1.188343e-01	ci left: 9.926153e-04	ci right 1.118955e-03	k: 1086	n:1030000
KS ci ratio: 7.859274e-03	ci left: 1.937767e-01	ci right 1.953066e-01	k: 200377	n:1030000
EGFR   1030000 perm   759 sec   (1357 perm/sec)   p_kst 1.945408e-01   p_cons 1.054369e-03   p_joint 4.369903e-03

Joint ci ratio: 5.836145e-02	ci left: 4.193149e-03	ci right 4.446163e-03	k: 4491	n:1040000
Cons ci ratio: 1.183455e-01	ci left: 9.914680e-04	ci right 1.117107e-03	k: 1095	n:1040000
KS ci ratio: 7.822632e-03	ci left: 1.937310e-01	ci right 1.952534e-01	k: 202271	n:1040000
EGFR   1040000 perm   771 sec   (1349 perm/sec)   p_kst 1.944913e-01   p_cons 1.052885e-03   p_joint 4.318269e-03

Joint ci ratio: 5.568676e-02	ci left: 4.566313e-03	ci right 4.828811e-03	k: 4931	n:1050000
Cons ci ratio: 1.172271e-01	ci left: 1.001437e-03	ci right 1.127056e-03	k: 1116	n:1050000
KS ci ratio: 7.783800e-03	ci left: 1.937946e-01	ci right 1.953099e-01	k: 204279	n:1050000
EGFR   1050000 perm   783 sec   (1341 perm/sec)   p_kst 1.945514e-01   p_cons 1.062857e-03   p_joint 4.696190e-03

Joint ci ratio: 5.550176e-02	ci left: 4.553933e-03	ci right 4.814822e-03	k: 4964	n:1060000
Cons ci ratio: 1.169138e-01	ci left: 9.974835e-04	ci right 1.122250e-03	k: 1122	n:1060000
KS ci ratio: 7.746450e-03	ci left: 1.938203e-01	ci right 1.953285e-01	k: 206248	n:1060000
EGFR   1060000 perm   795 sec   (1334 perm/sec)   p_kst 1.945736e-01   p_cons 1.058491e-03   p_joint 4.683019e-03

Joint ci ratio: 5.516355e-02	ci left: 4.567595e-03	ci right 4.827621e-03	k: 5025	n:1070000
Cons ci ratio: 1.166030e-01	ci left: 9.936048e-04	ci right 1.117533e-03	k: 1128	n:1070000
KS ci ratio: 7.708184e-03	ci left: 1.939044e-01	ci right 1.954057e-01	k: 208280	n:1070000
EGFR   1070000 perm   807 sec   (1326 perm/sec)   p_kst 1.946542e-01   p_cons 1.054206e-03   p_joint 4.696262e-03

Joint ci ratio: 5.528646e-02	ci left: 4.505209e-03	ci right 4.762273e-03	k: 5003	n:1080000
Cons ci ratio: 1.160390e-01	ci left: 9.942936e-04	ci right 1.117667e-03	k: 1139	n:1080000
KS ci ratio: 7.671929e-03	ci left: 1.939277e-01	ci right 1.954221e-01	k: 210248	n:1080000
EGFR   1080000 perm   819 sec   (1319 perm/sec)   p_kst 1.946741e-01   p_cons 1.054630e-03   p_joint 4.632407e-03

Joint ci ratio: 5.699478e-02	ci left: 4.197919e-03	ci right 4.445094e-03	k: 4709	n:1090000
Cons ci ratio: 1.157351e-01	ci left: 9.905166e-04	ci right 1.113077e-03	k: 1145	n:1090000
KS ci ratio: 7.638617e-03	ci left: 1.938507e-01	ci right 1.953380e-01	k: 212107	n:1090000
EGFR   1090000 perm   831 sec   (1312 perm/sec)   p_kst 1.945936e-01   p_cons 1.050459e-03   p_joint 4.320183e-03

Joint ci ratio: 5.030463e-02	ci left: 5.351867e-03	ci right 5.628928e-03	k: 6038	n:1100000
Cons ci ratio: 1.153334e-01	ci left: 9.885744e-04	ci right 1.110441e-03	k: 1153	n:1100000
KS ci ratio: 7.603463e-03	ci left: 1.938687e-01	ci right 1.953493e-01	k: 214069	n:1100000
EGFR   1100000 perm   843 sec   (1304 perm/sec)   p_kst 1.946082e-01   p_cons 1.048182e-03   p_joint 5.489091e-03

Joint ci ratio: 5.072993e-02	ci left: 5.214691e-03	ci right 5.486999e-03	k: 5938	n:1110000
Cons ci ratio: 1.150350e-01	ci left: 9.849179e-04	ci right 1.105998e-03	k: 1159	n:1110000
KS ci ratio: 7.569159e-03	ci left: 1.938711e-01	ci right 1.953449e-01	k: 216014	n:1110000
EGFR   1110000 perm   856 sec   (1297 perm/sec)   p_kst 1.946072e-01   p_cons 1.044144e-03   p_joint 5.349550e-03

Joint ci ratio: 5.045432e-02	ci left: 5.225433e-03	ci right 5.496777e-03	k: 6003	n:1120000
Cons ci ratio: 1.143468e-01	ci left: 9.882655e-04	ci right 1.108982e-03	k: 1173	n:1120000
KS ci ratio: 7.536282e-03	ci left: 1.938333e-01	ci right 1.953004e-01	k: 217914	n:1120000
EGFR   1120000 perm   868 sec   (1290 perm/sec)   p_kst 1.945661e-01   p_cons 1.047321e-03   p_joint 5.359821e-03

Joint ci ratio: 5.059550e-02	ci left: 5.150351e-03	ci right 5.418566e-03	k: 5970	n:1130000
Cons ci ratio: 1.136230e-01	ci left: 9.924158e-04	ci right 1.112820e-03	k: 1188	n:1130000
KS ci ratio: 7.502028e-03	ci left: 1.938713e-01	ci right 1.953320e-01	k: 219899	n:1130000
EGFR   1130000 perm   881 sec   (1283 perm/sec)   p_kst 1.946009e-01   p_cons 1.051327e-03   p_joint 5.283186e-03

Joint ci ratio: 5.099310e-02	ci left: 5.025488e-03	ci right 5.289317e-03	k: 5878	n:1140000
Cons ci ratio: 1.130539e-01	ci left: 9.939383e-04	ci right 1.113883e-03	k: 1200	n:1140000
KS ci ratio: 7.469094e-03	ci left: 1.938727e-01	ci right 1.953271e-01	k: 221843	n:1140000
EGFR   1140000 perm   893 sec   (1276 perm/sec)   p_kst 1.945991e-01   p_cons 1.052632e-03   p_joint 5.156140e-03

Joint ci ratio: 5.082508e-02	ci left: 5.015268e-03	ci right 5.277668e-03	k: 5917	n:1150000
Cons ci ratio: 1.128196e-01	ci left: 9.895203e-04	ci right 1.108668e-03	k: 1205	n:1150000
KS ci ratio: 7.438220e-03	ci left: 1.938056e-01	ci right 1.952534e-01	k: 223708	n:1150000
EGFR   1150000 perm   906 sec   (1269 perm/sec)   p_kst 1.945287e-01   p_cons 1.047826e-03   p_joint 5.145217e-03

Joint ci ratio: 5.059472e-02	ci left: 5.017995e-03	ci right 5.279313e-03	k: 5971	n:1160000
Cons ci ratio: 1.124473e-01	ci left: 9.876921e-04	ci right 1.106201e-03	k: 1213	n:1160000
KS ci ratio: 7.407278e-03	ci left: 1.937585e-01	ci right 1.951999e-01	k: 225595	n:1160000
EGFR   1160000 perm   919 sec   (1262 perm/sec)   p_kst 1.944784e-01   p_cons 1.045690e-03   p_joint 5.147414e-03

Joint ci ratio: 5.040531e-02	ci left: 5.013082e-03	ci right 5.273138e-03	k: 6016	n:1170000
Cons ci ratio: 1.120788e-01	ci left: 9.858959e-04	ci right 1.103776e-03	k: 1221	n:1170000
KS ci ratio: 7.376194e-03	ci left: 1.937345e-01	ci right 1.951696e-01	k: 227508	n:1170000
EGFR   1170000 perm   932 sec   (1255 perm/sec)   p_kst 1.944513e-01   p_cons 1.043590e-03   p_joint 5.141880e-03

Joint ci ratio: 4.954873e-02	ci left: 5.145512e-03	ci right 5.407773e-03	k: 6225	n:1180000
Cons ci ratio: 1.115324e-01	ci left: 9.874260e-04	ci right 1.104876e-03	k: 1233	n:1180000
KS ci ratio: 7.346195e-03	ci left: 1.936812e-01	ci right 1.951101e-01	k: 229386	n:1180000
EGFR   1180000 perm   946 sec   (1248 perm/sec)   p_kst 1.943949e-01   p_cons 1.044915e-03   p_joint 5.275424e-03

Joint ci ratio: 4.933917e-02	ci left: 5.146260e-03	ci right 5.407418e-03	k: 6278	n:1190000
Cons ci ratio: 1.111280e-01	ci left: 9.864807e-04	ci right 1.103365e-03	k: 1242	n:1190000
KS ci ratio: 7.316008e-03	ci left: 1.936524e-01	ci right 1.950752e-01	k: 231292	n:1190000
EGFR   1190000 perm   959 sec   (1241 perm/sec)   p_kst 1.943630e-01   p_cons 1.043697e-03   p_joint 5.275630e-03

Joint ci ratio: 4.753938e-02	ci left: 5.500201e-03	ci right 5.768860e-03	k: 6760	n:1200000
Cons ci ratio: 1.106395e-01	ci left: 9.871725e-04	ci right 1.103591e-03	k: 1253	n:1200000
KS ci ratio: 7.284059e-03	ci left: 1.937156e-01	ci right 1.951326e-01	k: 233308	n:1200000
EGFR   1200000 perm   972 sec   (1234 perm/sec)   p_kst 1.944233e-01   p_cons 1.044167e-03   p_joint 5.633333e-03

Joint ci ratio: 4.797411e-02	ci left: 5.355929e-03	ci right 5.620000e-03	k: 6639	n:1210000
Cons ci ratio: 1.103321e-01	ci left: 9.846392e-04	ci right 1.100415e-03	k: 1260	n:1210000
KS ci ratio: 7.253040e-03	ci left: 1.937554e-01	ci right 1.951667e-01	k: 235297	n:1210000
EGFR   1210000 perm   986 sec   (1228 perm/sec)   p_kst 1.944603e-01   p_cons 1.041322e-03   p_joint 5.486777e-03

Joint ci ratio: 4.837606e-02	ci left: 5.223751e-03	ci right 5.483523e-03	k: 6530	n:1220000
Cons ci ratio: 1.098108e-01	ci left: 9.861337e-04	ci right 1.101502e-03	k: 1272	n:1220000
KS ci ratio: 7.224078e-03	ci left: 1.937226e-01	ci right 1.951280e-01	k: 237198	n:1220000
EGFR   1220000 perm   999 sec   (1221 perm/sec)   p_kst 1.944246e-01   p_cons 1.042623e-03   p_joint 5.352459e-03

Joint ci ratio: 4.817729e-02	ci left: 5.224655e-03	ci right 5.483374e-03	k: 6584	n:1230000
Cons ci ratio: 1.090845e-01	ci left: 9.915593e-04	ci right 1.106746e-03	k: 1289	n:1230000
KS ci ratio: 7.194227e-03	ci left: 1.937440e-01	ci right 1.951436e-01	k: 239165	n:1230000
EGFR   1230000 perm   1012 sec   (1215 perm/sec)   p_kst 1.944431e-01   p_cons 1.047967e-03   p_joint 5.352846e-03

Joint ci ratio: 4.803554e-02	ci left: 5.213593e-03	ci right 5.470984e-03	k: 6623	n:1240000
Cons ci ratio: 1.087480e-01	ci left: 9.898387e-04	ci right 1.104448e-03	k: 1297	n:1240000
KS ci ratio: 7.164891e-03	ci left: 1.937585e-01	ci right 1.951526e-01	k: 241124	n:1240000
EGFR   1240000 perm   1025 sec   (1209 perm/sec)   p_kst 1.944548e-01   p_cons 1.045968e-03   p_joint 5.341129e-03

Joint ci ratio: 4.877490e-02	ci left: 5.015389e-03	ci right 5.266913e-03	k: 6425	n:1250000
Cons ci ratio: 1.082487e-01	ci left: 9.912595e-04	ci right 1.105473e-03	k: 1309	n:1250000
KS ci ratio: 7.137041e-03	ci left: 1.937233e-01	ci right 1.951117e-01	k: 243021	n:1250000
EGFR   1250000 perm   1039 sec   (1203 perm/sec)   p_kst 1.944168e-01   p_cons 1.047200e-03   p_joint 5.140000e-03

Joint ci ratio: 4.859381e-02	ci left: 5.013215e-03	ci right 5.263671e-03	k: 6473	n:1260000
Cons ci ratio: 1.078379e-01	ci left: 9.911144e-04	ci right 1.104850e-03	k: 1319	n:1260000
KS ci ratio: 7.108666e-03	ci left: 1.937260e-01	ci right 1.951088e-01	k: 244965	n:1260000
EGFR   1260000 perm   1053 sec   (1197 perm/sec)   p_kst 1.944167e-01   p_cons 1.046825e-03   p_joint 5.137302e-03

Joint ci ratio: 4.859857e-02	ci left: 4.972961e-03	ci right 5.221430e-03	k: 6472	n:1270000
Cons ci ratio: 1.073913e-01	ci left: 9.917386e-04	ci right 1.105045e-03	k: 1330	n:1270000
KS ci ratio: 7.080431e-03	ci left: 1.937372e-01	ci right 1.951146e-01	k: 246920	n:1270000
EGFR   1270000 perm   1066 sec   (1191 perm/sec)   p_kst 1.944252e-01   p_cons 1.047244e-03   p_joint 5.096063e-03

Joint ci ratio: 4.838588e-02	ci left: 4.978101e-03	ci right 5.225709e-03	k: 6529	n:1280000
Cons ci ratio: 1.069503e-01	ci left: 9.923541e-04	ci right 1.105236e-03	k: 1341	n:1280000
KS ci ratio: 7.052143e-03	ci left: 1.937654e-01	ci right 1.951375e-01	k: 248897	n:1280000
EGFR   1280000 perm   1080 sec   (1185 perm/sec)   p_kst 1.944508e-01   p_cons 1.047656e-03   p_joint 5.100781e-03

Joint ci ratio: 4.844654e-02	ci left: 4.927255e-03	ci right 5.172649e-03	k: 6513	n:1290000
Cons ci ratio: 1.063966e-01	ci left: 9.952247e-04	ci right 1.107810e-03	k: 1355	n:1290000
KS ci ratio: 7.025808e-03	ci left: 1.937213e-01	ci right 1.950879e-01	k: 250781	n:1290000
EGFR   1290000 perm   1094 sec   (1179 perm/sec)   p_kst 1.944039e-01   p_cons 1.050388e-03   p_joint 5.048837e-03

Joint ci ratio: 4.842134e-02	ci left: 4.894671e-03	ci right 5.138312e-03	k: 6520	n:1300000
Cons ci ratio: 1.060842e-01	ci left: 9.935594e-04	ci right 1.105606e-03	k: 1363	n:1300000
KS ci ratio: 6.998683e-03	ci left: 1.937262e-01	ci right 1.950875e-01	k: 252728	n:1300000
EGFR   1300000 perm   1108 sec   (1174 perm/sec)   p_kst 1.944062e-01   p_cons 1.048462e-03   p_joint 5.015385e-03

Joint ci ratio: 4.893010e-02	ci left: 4.756253e-03	ci right 4.995562e-03	k: 6386	n:1310000
Cons ci ratio: 1.055822e-01	ci left: 9.956360e-04	ci right 1.107352e-03	k: 1376	n:1310000
KS ci ratio: 6.973484e-03	ci left: 1.936586e-01	ci right 1.950145e-01	k: 254580	n:1310000
EGFR   1310000 perm   1122 sec   (1168 perm/sec)   p_kst 1.943359e-01   p_cons 1.050382e-03   p_joint 4.874809e-03

Joint ci ratio: 4.875490e-02	ci left: 4.754644e-03	ci right 4.992991e-03	k: 6432	n:1320000
Cons ci ratio: 1.052769e-01	ci left: 9.939940e-04	ci right 1.105184e-03	k: 1384	n:1320000
KS ci ratio: 6.946235e-03	ci left: 1.936964e-01	ci right 1.950473e-01	k: 256570	n:1320000
EGFR   1320000 perm   1136 sec   (1162 perm/sec)   p_kst 1.943712e-01   p_cons 1.048485e-03   p_joint 4.872727e-03

Joint ci ratio: 4.857780e-02	ci left: 4.753803e-03	ci right 4.991218e-03	k: 6479	n:1330000
Cons ci ratio: 1.048237e-01	ci left: 9.953059e-04	ci right 1.106133e-03	k: 1396	n:1330000
KS ci ratio: 6.920516e-03	ci left: 1.936789e-01	ci right 1.950247e-01	k: 258487	n:1330000
EGFR   1330000 perm   1150 sec   (1156 perm/sec)   p_kst 1.943511e-01   p_cons 1.049624e-03   p_joint 4.871429e-03

Joint ci ratio: 4.866176e-02	ci left: 4.702106e-03	ci right 4.937356e-03	k: 6457	n:1340000
Cons ci ratio: 1.044877e-01	ci left: 9.944189e-04	ci right 1.104771e-03	k: 1405	n:1340000
KS ci ratio: 6.895524e-03	ci left: 1.936416e-01	ci right 1.949822e-01	k: 260377	n:1340000
EGFR   1340000 perm   1165 sec   (1150 perm/sec)   p_kst 1.943112e-01   p_cons 1.048507e-03   p_joint 4.818657e-03

Joint ci ratio: 4.863994e-02	ci left: 4.671664e-03	ci right 4.905283e-03	k: 6463	n:1350000
Cons ci ratio: 1.038980e-01	ci left: 9.985959e-04	ci right 1.108748e-03	k: 1421	n:1350000
KS ci ratio: 6.870753e-03	ci left: 1.936070e-01	ci right 1.949425e-01	k: 262270	n:1350000
EGFR   1350000 perm   1179 sec   (1145 perm/sec)   p_kst 1.942741e-01   p_cons 1.052593e-03   p_joint 4.787407e-03

Joint ci ratio: 4.846782e-02	ci left: 4.670726e-03	ci right 4.903449e-03	k: 6509	n:1360000
Cons ci ratio: 1.035708e-01	ci left: 9.976992e-04	ci right 1.107385e-03	k: 1430	n:1360000
KS ci ratio: 6.846037e-03	ci left: 1.935824e-01	ci right 1.949130e-01	k: 264176	n:1360000
EGFR   1360000 perm   1194 sec   (1139 perm/sec)   p_kst 1.942471e-01   p_cons 1.051471e-03   p_joint 4.786029e-03

Joint ci ratio: 4.866434e-02	ci left: 4.599134e-03	ci right 4.829245e-03	k: 6457	n:1370000
Cons ci ratio: 1.033546e-01	ci left: 9.946829e-04	ci right 1.103794e-03	k: 1436	n:1370000
KS ci ratio: 6.821077e-03	ci left: 1.935816e-01	ci right 1.949073e-01	k: 266114	n:1370000
EGFR   1370000 perm   1208 sec   (1134 perm/sec)   p_kst 1.942438e-01   p_cons 1.048175e-03   p_joint 4.713139e-03

Joint ci ratio: 4.876009e-02	ci left: 4.547909e-03	ci right 4.775917e-03	k: 6432	n:1380000
Cons ci ratio: 1.031039e-01	ci left: 9.924165e-04	ci right 1.100999e-03	k: 1443	n:1380000
KS ci ratio: 6.796419e-03	ci left: 1.935794e-01	ci right 1.949002e-01	k: 268050	n:1380000
EGFR   1380000 perm   1223 sec   (1129 perm/sec)   p_kst 1.942391e-01   p_cons 1.045652e-03   p_joint 4.660870e-03

Joint ci ratio: 4.859047e-02	ci left: 4.547170e-03	ci right 4.774326e-03	k: 6477	n:1390000
Cons ci ratio: 1.026781e-01	ci left: 9.936878e-04	ci right 1.101934e-03	k: 1455	n:1390000
KS ci ratio: 6.772074e-03	ci left: 1.935750e-01	ci right 1.948910e-01	k: 269983	n:1390000
EGFR   1390000 perm   1237 sec   (1123 perm/sec)   p_kst 1.942324e-01   p_cons 1.046763e-03   p_joint 4.659712e-03

Joint ci ratio: 4.841887e-02	ci left: 4.547149e-03	ci right 4.773479e-03	k: 6523	n:1400000
Cons ci ratio: 1.023273e-01	ci left: 9.935498e-04	ci right 1.101389e-03	k: 1465	n:1400000
KS ci ratio: 6.748127e-03	ci left: 1.935643e-01	ci right 1.948756e-01	k: 271907	n:1400000
EGFR   1400000 perm   1252 sec   (1118 perm/sec)   p_kst 1.942193e-01   p_cons 1.046429e-03   p_joint 4.659286e-03

Joint ci ratio: 4.825277e-02	ci left: 4.546429e-03	ci right 4.771925e-03	k: 6568	n:1410000
Cons ci ratio: 1.020147e-01	ci left: 9.927232e-04	ci right 1.100123e-03	k: 1474	n:1410000
KS ci ratio: 6.723716e-03	ci left: 1.935870e-01	ci right 1.948937e-01	k: 273878	n:1410000
EGFR   1410000 perm   1267 sec   (1113 perm/sec)   p_kst 1.942397e-01   p_cons 1.045390e-03   p_joint 4.658156e-03

Joint ci ratio: 4.813226e-02	ci left: 4.537371e-03	ci right 4.761840e-03	k: 6601	n:1420000
Cons ci ratio: 1.016022e-01	ci left: 9.939677e-04	ci right 1.101042e-03	k: 1486	n:1420000
KS ci ratio: 6.699071e-03	ci left: 1.936326e-01	ci right 1.949348e-01	k: 275882	n:1420000
EGFR   1420000 perm   1281 sec   (1108 perm/sec)   p_kst 1.942831e-01   p_cons 1.046479e-03   p_joint 4.648592e-03

Joint ci ratio: 4.819174e-02	ci left: 4.494584e-03	ci right 4.717220e-03	k: 6585	n:1430000
Cons ci ratio: 1.013300e-01	ci left: 9.924693e-04	ci right 1.099079e-03	k: 1494	n:1430000
KS ci ratio: 6.675708e-03	ci left: 1.936301e-01	ci right 1.949278e-01	k: 277818	n:1430000
EGFR   1430000 perm   1296 sec   (1103 perm/sec)   p_kst 1.942783e-01   p_cons 1.044755e-03   p_joint 4.604895e-03

Joint ci ratio: 4.804252e-02	ci left: 4.491501e-03	ci right 4.713276e-03	k: 6626	n:1440000
Cons ci ratio: 1.009593e-01	ci left: 9.930228e-04	ci right 1.099278e-03	k: 1505	n:1440000
KS ci ratio: 6.653828e-03	ci left: 1.935694e-01	ci right 1.948624e-01	k: 279670	n:1440000
EGFR   1440000 perm   1311 sec   (1098 perm/sec)   p_kst 1.942153e-01   p_cons 1.045139e-03   p_joint 4.601389e-03

Joint ci ratio: 4.805422e-02	ci left: 4.458480e-03	ci right 4.678679e-03	k: 6623	n:1450000
Cons ci ratio: 1.007256e-01	ci left: 9.908802e-04	ci right 1.096646e-03	k: 1512	n:1450000
KS ci ratio: 6.631490e-03	ci left: 1.935412e-01	ci right 1.948296e-01	k: 281568	n:1450000
EGFR   1450000 perm   1326 sec   (1093 perm/sec)   p_kst 1.941848e-01   p_cons 1.042759e-03   p_joint 4.567586e-03

Joint ci ratio: 4.797863e-02	ci left: 4.442152e-03	ci right 4.661190e-03	k: 6644	n:1460000
Cons ci ratio: 1.003944e-01	ci left: 9.907704e-04	ci right 1.096157e-03	k: 1522	n:1460000
KS ci ratio: 6.608087e-03	ci left: 1.935743e-01	ci right 1.948584e-01	k: 283555	n:1460000
EGFR   1460000 perm   1341 sec   (1088 perm/sec)   p_kst 1.942158e-01   p_cons 1.042466e-03   p_joint 4.550685e-03

Joint ci ratio: 4.714217e-02	ci left: 4.571248e-03	ci right 4.792615e-03	k: 6881	n:1470000
Cons ci ratio: 1.000011e-01	ci left: 9.919892e-04	ci right 1.097067e-03	k: 1534	n:1470000
KS ci ratio: 6.586462e-03	ci left: 1.935343e-01	ci right 1.948139e-01	k: 285435	n:1470000
EGFR   1470000 perm   1357 sec   (1083 perm/sec)   p_kst 1.941735e-01   p_cons 1.043537e-03   p_joint 4.680952e-03

Joint ci ratio: 4.720844e-02	ci left: 4.527672e-03	ci right 4.747246e-03	k: 6862	n:1480000
Cons ci ratio: 9.967698e-02	ci left: 9.918746e-04	ci right 1.096580e-03	k: 1544	n:1480000
KS ci ratio: 6.563631e-03	ci left: 1.935623e-01	ci right 1.948376e-01	k: 287415	n:1480000
EGFR   1480000 perm   1372 sec   (1078 perm/sec)   p_kst 1.941993e-01   p_cons 1.043243e-03   p_joint 4.636486e-03

Outputting figure to mutsig2_images.part000000000055/EGFR.7_4009_1480000_0.1942_0.0010432_0.0046365.png
                gene_name: EGFR
               theta_stop: 0.100 
                    nperm: 1480000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.0010 
      ci_cons_bounds_left: 0.00099 
     ci_cons_bounds_right: 0.0011 
                  p_joint: 0.0046 
     ci_joint_bounds_left: 0.0045 
    ci_joint_bounds_right: 0.0047 

Current progress: 11 percent done.
EIF2AK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.376626e-02	ci left: 5.642377e-01	ci right 5.837192e-01	k: 5740	n:10000
Cons ci ratio: 6.816792e-02	ci left: 2.399555e-01	ci right 2.569912e-01	k: 2484	n:10000
KS ci ratio: 1.168940e-02	ci left: 9.128618e-01	ci right 9.236931e-01	k: 9184	n:10000
EIF2AK4   10000 perm   3 sec   (3910 perm/sec)   p_kst 9.184000e-01   p_cons 2.484000e-01   p_joint 5.740000e-01

Outputting figure to mutsig2_images.part000000000055/EIF2AK4.7_5106_10000_0.9184_0.2484_0.574.png
                gene_name: EIF2AK4
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 13 percent done.
EGF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.168237e-02	ci left: 3.556540e-01	ci right 3.746246e-01	k: 3651	n:10000
Cons ci ratio: 4.540162e-02	ci left: 4.172776e-01	ci right 4.367649e-01	k: 4270	n:10000
KS ci ratio: 7.363793e-02	ci left: 2.126039e-01	ci right 2.289591e-01	k: 2207	n:10000
EGF   10000 perm   2 sec   (4413 perm/sec)   p_kst 2.207000e-01   p_cons 4.270000e-01   p_joint 3.651000e-01

Outputting figure to mutsig2_images.part000000000055/EGF.6_3720_10000_0.2207_0.427_0.3651.png
                gene_name: EGF
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 16 percent done.
EGR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.721421e-02	ci left: 5.160570e-01	ci right 5.357279e-01	k: 5259	n:10000
Cons ci ratio: 4.260207e-02	ci left: 4.485975e-01	ci right 4.682268e-01	k: 4584	n:10000
KS ci ratio: 4.133735e-02	ci left: 4.635730e-01	ci right 4.832425e-01	k: 4734	n:10000
EGR2   10000 perm   2 sec   (5057 perm/sec)   p_kst 4.734000e-01   p_cons 4.584000e-01   p_joint 5.259000e-01

Outputting figure to mutsig2_images.part000000000055/EGR2.6_1439_10000_0.4734_0.4584_0.5259.png
                gene_name: EGR2
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 18 percent done.
EIF3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.645451e-02	ci left: 3.160206e-01	ci right 3.344813e-01	k: 3252	n:10000
Cons ci ratio: 3.793680e-02	ci left: 5.064518e-01	ci right 5.261387e-01	k: 5163	n:10000
KS ci ratio: 7.832462e-02	ci left: 1.923954e-01	ci right 2.081796e-01	k: 2002	n:10000
EIF3A   10000 perm   3 sec   (3814 perm/sec)   p_kst 2.002000e-01   p_cons 5.163000e-01   p_joint 3.252000e-01

Outputting figure to mutsig2_images.part000000000055/EIF3A.6_4237_10000_0.2002_0.5163_0.3252.png
                gene_name: EIF3A
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 20 percent done.
EIF3E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.583643e-01	ci left: 1.958938e-02	ci right 2.549330e-02	k: 224	n:10000
Cons ci ratio: 7.949257e-02	ci left: 1.877666e-01	ci right 2.034111e-01	k: 1955	n:10000
KS ci ratio: 6.710973e-01	ci left: 2.272624e-03	ci right 4.631334e-03	k: 33	n:10000
EIF3E   10000 perm   2 sec   (5420 perm/sec)   p_kst 3.300000e-03   p_cons 1.955000e-01   p_joint 2.240000e-02

Joint ci ratio: 2.581180e-01	ci left: 9.928283e-03	ci right 1.291630e-02	k: 227	n:20000
Cons ci ratio: 5.658836e-02	ci left: 1.879955e-01	ci right 1.989938e-01	k: 3869	n:20000
KS ci ratio: 4.854134e-01	ci left: 2.465236e-03	ci right 4.084517e-03	k: 64	n:20000
EIF3E   20000 perm   4 sec   (4809 perm/sec)   p_kst 3.200000e-03   p_cons 1.934500e-01   p_joint 1.135000e-02

Joint ci ratio: 2.563593e-01	ci left: 6.742109e-03	ci right 8.754981e-03	k: 231	n:30000
Cons ci ratio: 4.666341e-02	ci left: 1.859707e-01	ci right 1.948894e-01	k: 5712	n:30000
KS ci ratio: 4.015396e-01	ci left: 2.532772e-03	ci right 3.833062e-03	k: 94	n:30000
EIF3E   30000 perm   7 sec   (4568 perm/sec)   p_kst 3.133333e-03   p_cons 1.904000e-01   p_joint 7.700000e-03

Joint ci ratio: 3.163026e-01	ci left: 3.220809e-03	ci right 4.452947e-03	k: 152	n:40000
Cons ci ratio: 4.062050e-02	ci left: 1.849998e-01	ci right 1.926954e-01	k: 7553	n:40000
KS ci ratio: 3.749513e-01	ci left: 2.215372e-03	ci right 3.258905e-03	k: 108	n:40000
EIF3E   40000 perm   9 sec   (4458 perm/sec)   p_kst 2.700000e-03   p_cons 1.888250e-01   p_joint 3.800000e-03

Joint ci ratio: 3.239443e-01	ci left: 2.447727e-03	ci right 3.411422e-03	k: 145	n:50000
Cons ci ratio: 3.637844e-02	ci left: 1.850204e-01	ci right 1.918958e-01	k: 9422	n:50000
KS ci ratio: 3.407381e-01	ci left: 2.191025e-03	ci right 3.108239e-03	k: 131	n:50000
EIF3E   50000 perm   12 sec   (4320 perm/sec)   p_kst 2.620000e-03   p_cons 1.884400e-01   p_joint 2.900000e-03

Joint ci ratio: 2.993399e-01	ci left: 2.423896e-03	ci right 3.291968e-03	k: 170	n:60000
Cons ci ratio: 3.312154e-02	ci left: 1.861225e-01	ci right 1.924076e-01	k: 11355	n:60000
KS ci ratio: 3.094872e-01	ci left: 2.254530e-03	ci right 3.094726e-03	k: 159	n:60000
EIF3E   60000 perm   14 sec   (4233 perm/sec)   p_kst 2.650000e-03   p_cons 1.892500e-01   p_joint 2.833333e-03

Joint ci ratio: 2.464902e-01	ci left: 3.156457e-03	ci right 4.056892e-03	k: 251	n:70000
Cons ci ratio: 3.061710e-02	ci left: 1.868298e-01	ci right 1.926531e-01	k: 13281	n:70000
KS ci ratio: 2.909923e-01	ci left: 2.209869e-03	ci right 2.975150e-03	k: 180	n:70000
EIF3E   70000 perm   17 sec   (4155 perm/sec)   p_kst 2.571429e-03   p_cons 1.897286e-01   p_joint 3.585714e-03

Joint ci ratio: 2.342732e-01	ci left: 3.079068e-03	ci right 3.907583e-03	k: 278	n:80000
Cons ci ratio: 2.866233e-02	ci left: 1.867769e-01	ci right 1.922206e-01	k: 15159	n:80000
KS ci ratio: 2.734320e-01	ci left: 2.212422e-03	ci right 2.924417e-03	k: 204	n:80000
EIF3E   80000 perm   20 sec   (4066 perm/sec)   p_kst 2.550000e-03   p_cons 1.894875e-01   p_joint 3.475000e-03

Joint ci ratio: 2.298179e-01	ci left: 2.852027e-03	ci right 3.602779e-03	k: 289	n:90000
Cons ci ratio: 2.698116e-02	ci left: 1.874083e-01	ci right 1.925450e-01	k: 17097	n:90000
KS ci ratio: 2.587097e-01	ci left: 2.215490e-03	ci right 2.883884e-03	k: 228	n:90000
EIF3E   90000 perm   23 sec   (3996 perm/sec)   p_kst 2.533333e-03   p_cons 1.899667e-01   p_joint 3.211111e-03

Joint ci ratio: 1.779340e-01	ci left: 4.400153e-03	ci right 5.268951e-03	k: 482	n:100000
Cons ci ratio: 2.557230e-02	ci left: 1.878313e-01	ci right 1.927067e-01	k: 19026	n:100000
KS ci ratio: 2.409395e-01	ci left: 2.322069e-03	ci right 2.967318e-03	k: 263	n:100000
EIF3E   100000 perm   25 sec   (3932 perm/sec)   p_kst 2.630000e-03   p_cons 1.902600e-01   p_joint 4.820000e-03

Joint ci ratio: 1.724986e-01	ci left: 4.269574e-03	ci right 5.084153e-03	k: 513	n:110000
Cons ci ratio: 2.435257e-02	ci left: 1.883187e-01	ci right 1.929703e-01	k: 20970	n:110000
KS ci ratio: 2.294893e-01	ci left: 2.341971e-03	ci right 2.957445e-03	k: 290	n:110000
EIF3E   110000 perm   28 sec   (3868 perm/sec)   p_kst 2.636364e-03   p_cons 1.906364e-01   p_joint 4.663636e-03

Joint ci ratio: 1.581813e-01	ci left: 4.688796e-03	ci right 5.502071e-03	k: 610	n:120000
Cons ci ratio: 2.329095e-02	ci left: 1.887461e-01	ci right 1.932022e-01	k: 22916	n:120000
KS ci ratio: 2.198772e-01	ci left: 2.351285e-03	ci right 2.939827e-03	k: 316	n:120000
EIF3E   120000 perm   32 sec   (3808 perm/sec)   p_kst 2.633333e-03   p_cons 1.909667e-01   p_joint 5.083333e-03

Joint ci ratio: 1.518509e-01	ci left: 4.712611e-03	ci right 5.494330e-03	k: 662	n:130000
Cons ci ratio: 2.238210e-02	ci left: 1.887667e-01	ci right 1.930471e-01	k: 24817	n:130000
KS ci ratio: 2.101548e-01	ci left: 2.388769e-03	ci right 2.956853e-03	k: 346	n:130000
EIF3E   130000 perm   35 sec   (3746 perm/sec)   p_kst 2.661538e-03   p_cons 1.909000e-01   p_joint 5.092308e-03

Joint ci ratio: 1.411542e-01	ci left: 5.091723e-03	ci right 5.871831e-03	k: 766	n:140000
Cons ci ratio: 2.157196e-02	ci left: 1.887873e-01	ci right 1.929113e-01	k: 26718	n:140000
KS ci ratio: 2.026986e-01	ci left: 2.394260e-03	ci right 2.940948e-03	k: 372	n:140000
EIF3E   140000 perm   38 sec   (3689 perm/sec)   p_kst 2.657143e-03   p_cons 1.908429e-01   p_joint 5.471429e-03

Joint ci ratio: 1.414585e-01	ci left: 4.732919e-03	ci right 5.459746e-03	k: 763	n:150000
Cons ci ratio: 2.082185e-02	ci left: 1.891329e-01	ci right 1.931190e-01	k: 28668	n:150000
KS ci ratio: 1.964780e-01	ci left: 2.386647e-03	ci right 2.912871e-03	k: 396	n:150000
EIF3E   150000 perm   41 sec   (3634 perm/sec)   p_kst 2.640000e-03   p_cons 1.911200e-01   p_joint 5.086667e-03

Joint ci ratio: 1.382456e-01	ci left: 4.654226e-03	ci right 5.351396e-03	k: 799	n:160000
Cons ci ratio: 2.015426e-02	ci left: 1.892943e-01	ci right 1.931544e-01	k: 30595	n:160000
KS ci ratio: 1.907970e-01	ci left: 2.380210e-03	ci right 2.888080e-03	k: 420	n:160000
EIF3E   160000 perm   45 sec   (3579 perm/sec)   p_kst 2.625000e-03   p_cons 1.912187e-01   p_joint 4.993750e-03

Joint ci ratio: 1.361449e-01	ci left: 4.522438e-03	ci right 5.188738e-03	k: 824	n:170000
Cons ci ratio: 1.955930e-02	ci left: 1.892451e-01	ci right 1.929890e-01	k: 32489	n:170000
KS ci ratio: 1.845453e-01	ci left: 2.402775e-03	ci right 2.896782e-03	k: 449	n:170000
EIF3E   170000 perm   48 sec   (3520 perm/sec)   p_kst 2.641176e-03   p_cons 1.911118e-01   p_joint 4.847059e-03

Joint ci ratio: 1.341367e-01	ci left: 4.405366e-03	ci right 5.044079e-03	k: 849	n:180000
Cons ci ratio: 1.901204e-02	ci left: 1.892361e-01	ci right 1.928739e-01	k: 34389	n:180000
KS ci ratio: 1.794347e-01	ci left: 2.407153e-03	ci right 2.886866e-03	k: 475	n:180000
EIF3E   180000 perm   52 sec   (3467 perm/sec)   p_kst 2.638889e-03   p_cons 1.910500e-01   p_joint 4.716667e-03

Joint ci ratio: 1.324426e-01	ci left: 4.285415e-03	ci right 4.898272e-03	k: 871	n:190000
Cons ci ratio: 1.850451e-02	ci left: 1.892923e-01	ci right 1.928330e-01	k: 36301	n:190000
KS ci ratio: 1.745522e-01	ci left: 2.416272e-03	ci right 2.883319e-03	k: 502	n:190000
EIF3E   190000 perm   56 sec   (3417 perm/sec)   p_kst 2.642105e-03   p_cons 1.910579e-01   p_joint 4.584211e-03

Joint ci ratio: 1.215313e-01	ci left: 4.860383e-03	ci right 5.494089e-03	k: 1034	n:200000
Cons ci ratio: 1.803177e-02	ci left: 1.894088e-01	ci right 1.928602e-01	k: 38226	n:200000
KS ci ratio: 1.692491e-01	ci left: 2.448579e-03	ci right 2.906025e-03	k: 534	n:200000
EIF3E   200000 perm   59 sec   (3369 perm/sec)   p_kst 2.670000e-03   p_cons 1.911300e-01   p_joint 5.170000e-03

Joint ci ratio: 1.138428e-01	ci left: 5.294549e-03	ci right 5.938260e-03	k: 1178	n:210000
Cons ci ratio: 1.757998e-02	ci left: 1.897525e-01	ci right 1.931227e-01	k: 40201	n:210000
KS ci ratio: 1.655771e-01	ci left: 2.441477e-03	ci right 2.886713e-03	k: 558	n:210000
EIF3E   210000 perm   63 sec   (3321 perm/sec)   p_kst 2.657143e-03   p_cons 1.914333e-01   p_joint 5.609524e-03

Joint ci ratio: 1.151408e-01	ci left: 4.939038e-03	ci right 5.546837e-03	k: 1152	n:220000
Cons ci ratio: 1.718093e-02	ci left: 1.896990e-01	ci right 1.929909e-01	k: 42095	n:220000
KS ci ratio: 1.617175e-01	ci left: 2.448203e-03	ci right 2.883247e-03	k: 585	n:220000
EIF3E   220000 perm   67 sec   (3274 perm/sec)   p_kst 2.659091e-03   p_cons 1.913409e-01   p_joint 5.236364e-03

Joint ci ratio: 1.134364e-01	ci left: 4.872112e-03	ci right 5.462204e-03	k: 1187	n:230000
Cons ci ratio: 1.679230e-02	ci left: 1.899370e-01	ci right 1.931578e-01	k: 44055	n:230000
KS ci ratio: 1.579867e-01	ci left: 2.458630e-03	ci right 2.884492e-03	k: 613	n:230000
EIF3E   230000 perm   71 sec   (3229 perm/sec)   p_kst 2.665217e-03   p_cons 1.915435e-01   p_joint 5.160870e-03

Joint ci ratio: 1.097497e-01	ci left: 4.997205e-03	ci right 5.581507e-03	k: 1268	n:240000
Cons ci ratio: 1.645124e-02	ci left: 1.897364e-01	ci right 1.928878e-01	k: 45914	n:240000
KS ci ratio: 1.531923e-01	ci left: 2.512366e-03	ci right 2.933119e-03	k: 652	n:240000
EIF3E   240000 perm   75 sec   (3186 perm/sec)   p_kst 2.716667e-03   p_cons 1.913083e-01   p_joint 5.283333e-03

Joint ci ratio: 1.105522e-01	ci left: 4.727265e-03	ci right 5.284306e-03	k: 1250	n:250000
Cons ci ratio: 1.612848e-02	ci left: 1.895843e-01	ci right 1.926708e-01	k: 47781	n:250000
KS ci ratio: 1.492425e-01	ci left: 2.546578e-03	ci right 2.961083e-03	k: 687	n:250000
EIF3E   250000 perm   80 sec   (3144 perm/sec)   p_kst 2.748000e-03   p_cons 1.911240e-01   p_joint 5.000000e-03

Joint ci ratio: 1.090832e-01	ci left: 4.672617e-03	ci right 5.215432e-03	k: 1284	n:260000
Cons ci ratio: 1.582182e-02	ci left: 1.894867e-01	ci right 1.925125e-01	k: 49659	n:260000
KS ci ratio: 1.469137e-01	ci left: 2.530112e-03	ci right 2.934946e-03	k: 709	n:260000
EIF3E   260000 perm   84 sec   (3102 perm/sec)   p_kst 2.726923e-03   p_cons 1.909962e-01   p_joint 4.938462e-03

Joint ci ratio: 1.090932e-01	ci left: 4.499535e-03	ci right 5.022294e-03	k: 1284	n:270000
Cons ci ratio: 1.552197e-02	ci left: 1.895963e-01	ci right 1.925659e-01	k: 51591	n:270000
KS ci ratio: 1.445916e-01	ci left: 2.518481e-03	ci right 2.914535e-03	k: 732	n:270000
EIF3E   270000 perm   88 sec   (3061 perm/sec)   p_kst 2.711111e-03   p_cons 1.910778e-01   p_joint 4.755556e-03

Joint ci ratio: 1.087207e-01	ci left: 4.370089e-03	ci right 4.875963e-03	k: 1293	n:280000
Cons ci ratio: 1.524118e-02	ci left: 1.896451e-01	ci right 1.925613e-01	k: 53508	n:280000
KS ci ratio: 1.426603e-01	ci left: 2.497395e-03	ci right 2.884441e-03	k: 752	n:280000
EIF3E   280000 perm   93 sec   (3021 perm/sec)   p_kst 2.685714e-03   p_cons 1.911000e-01   p_joint 4.617857e-03

Joint ci ratio: 1.048522e-01	ci left: 4.544968e-03	ci right 5.051213e-03	k: 1390	n:290000
Cons ci ratio: 1.496526e-02	ci left: 1.898939e-01	ci right 1.927605e-01	k: 55484	n:290000
KS ci ratio: 1.400794e-01	ci left: 2.504416e-03	ci right 2.884941e-03	k: 780	n:290000
EIF3E   290000 perm   97 sec   (2983 perm/sec)   p_kst 2.689655e-03   p_cons 1.913241e-01   p_joint 4.793103e-03

Joint ci ratio: 1.044466e-01	ci left: 4.429162e-03	ci right 4.920482e-03	k: 1401	n:300000
Cons ci ratio: 1.470695e-02	ci left: 1.900600e-01	ci right 1.928792e-01	k: 57440	n:300000
KS ci ratio: 1.373785e-01	ci left: 2.520684e-03	ci right 2.895692e-03	k: 811	n:300000
EIF3E   300000 perm   102 sec   (2946 perm/sec)   p_kst 2.703333e-03   p_cons 1.914667e-01   p_joint 4.670000e-03

Joint ci ratio: 1.055182e-01	ci left: 4.198309e-03	ci right 4.669094e-03	k: 1373	n:310000
Cons ci ratio: 1.446761e-02	ci left: 1.900872e-01	ci right 1.928605e-01	k: 59356	n:310000
KS ci ratio: 1.355556e-01	ci left: 2.507915e-03	ci right 2.875674e-03	k: 833	n:310000
EIF3E   310000 perm   107 sec   (2909 perm/sec)   p_kst 2.687097e-03   p_cons 1.914710e-01   p_joint 4.429032e-03

Joint ci ratio: 1.068616e-01	ci left: 3.963658e-03	ci right 4.414144e-03	k: 1339	n:320000
Cons ci ratio: 1.424231e-02	ci left: 1.900538e-01	ci right 1.927831e-01	k: 61253	n:320000
KS ci ratio: 1.285629e-01	ci left: 2.710590e-03	ci right 3.086002e-03	k: 926	n:320000
EIF3E   320000 perm   111 sec   (2874 perm/sec)   p_kst 2.893750e-03   p_cons 1.914156e-01   p_joint 4.184375e-03

Joint ci ratio: 1.069085e-01	ci left: 3.840585e-03	ci right 4.277286e-03	k: 1338	n:330000
Cons ci ratio: 1.403574e-02	ci left: 1.898353e-01	ci right 1.925216e-01	k: 63088	n:330000
KS ci ratio: 1.267309e-01	ci left: 2.707656e-03	ci right 3.076917e-03	k: 953	n:330000
EIF3E   330000 perm   116 sec   (2838 perm/sec)   p_kst 2.887879e-03   p_cons 1.911758e-01   p_joint 4.054545e-03

Joint ci ratio: 1.037351e-01	ci left: 3.965327e-03	ci right 4.402013e-03	k: 1421	n:340000
Cons ci ratio: 1.382855e-02	ci left: 1.898383e-01	ci right 1.924846e-01	k: 64994	n:340000
KS ci ratio: 1.246569e-01	ci left: 2.719179e-03	ci right 3.083493e-03	k: 985	n:340000
EIF3E   340000 perm   121 sec   (2804 perm/sec)   p_kst 2.897059e-03   p_cons 1.911588e-01   p_joint 4.179412e-03

Joint ci ratio: 1.006268e-01	ci left: 4.099835e-03	ci right 4.537006e-03	k: 1510	n:350000
Cons ci ratio: 1.362662e-02	ci left: 1.899240e-01	ci right 1.925326e-01	k: 66929	n:350000
KS ci ratio: 1.232903e-01	ci left: 2.702394e-03	ci right 3.060201e-03	k: 1007	n:350000
EIF3E   350000 perm   126 sec   (2770 perm/sec)   p_kst 2.877143e-03   p_cons 1.912257e-01   p_joint 4.314286e-03

Joint ci ratio: 9.900119e-02	ci left: 4.121374e-03	ci right 4.553331e-03	k: 1560	n:360000
Cons ci ratio: 1.343957e-02	ci left: 1.898611e-01	ci right 1.924328e-01	k: 68812	n:360000
KS ci ratio: 1.209706e-01	ci left: 2.732354e-03	ci right 3.086834e-03	k: 1046	n:360000
EIF3E   360000 perm   132 sec   (2737 perm/sec)   p_kst 2.905556e-03   p_cons 1.911444e-01   p_joint 4.333333e-03

Joint ci ratio: 9.699935e-02	ci left: 4.181362e-03	ci right 4.610240e-03	k: 1625	n:370000
Cons ci ratio: 1.326244e-02	ci left: 1.897453e-01	ci right 1.922812e-01	k: 70674	n:370000
KS ci ratio: 1.182323e-01	ci left: 2.786982e-03	ci right 3.139793e-03	k: 1095	n:370000
EIF3E   370000 perm   137 sec   (2705 perm/sec)   p_kst 2.959459e-03   p_cons 1.910108e-01   p_joint 4.391892e-03

Joint ci ratio: 9.565547e-02	ci left: 4.189463e-03	ci right 4.612885e-03	k: 1671	n:380000
Cons ci ratio: 1.308656e-02	ci left: 1.897670e-01	ci right 1.922693e-01	k: 72586	n:380000
KS ci ratio: 1.167506e-01	ci left: 2.785159e-03	ci right 3.133015e-03	k: 1123	n:380000
EIF3E   380000 perm   142 sec   (2673 perm/sec)   p_kst 2.955263e-03   p_cons 1.910158e-01   p_joint 4.397368e-03

Joint ci ratio: 9.860638e-02	ci left: 3.836827e-03	ci right 4.237263e-03	k: 1573	n:390000
Cons ci ratio: 1.291686e-02	ci left: 1.898031e-01	ci right 1.922733e-01	k: 74504	n:390000
KS ci ratio: 1.152731e-01	ci left: 2.785946e-03	ci right 3.129198e-03	k: 1152	n:390000
EIF3E   390000 perm   148 sec   (2643 perm/sec)   p_kst 2.953846e-03   p_cons 1.910359e-01   p_joint 4.033333e-03

Joint ci ratio: 9.481560e-02	ci left: 4.053190e-03	ci right 4.459043e-03	k: 1701	n:400000
Cons ci ratio: 1.276133e-02	ci left: 1.896506e-01	ci right 1.920888e-01	k: 76347	n:400000
KS ci ratio: 1.137057e-01	ci left: 2.794007e-03	ci right 3.133257e-03	k: 1184	n:400000
EIF3E   400000 perm   153 sec   (2614 perm/sec)   p_kst 2.960000e-03   p_cons 1.908675e-01   p_joint 4.252500e-03

Joint ci ratio: 9.396508e-02	ci left: 4.028155e-03	ci right 4.427682e-03	k: 1732	n:410000
Cons ci ratio: 1.260512e-02	ci left: 1.896566e-01	ci right 1.920648e-01	k: 78252	n:410000
KS ci ratio: 1.126189e-01	ci left: 2.780369e-03	ci right 3.114522e-03	k: 1207	n:410000
EIF3E   410000 perm   159 sec   (2586 perm/sec)   p_kst 2.943902e-03   p_cons 1.908585e-01   p_joint 4.224390e-03

Joint ci ratio: 9.295199e-02	ci left: 4.020607e-03	ci right 4.414853e-03	k: 1770	n:420000
Cons ci ratio: 1.245469e-02	ci left: 1.896577e-01	ci right 1.920370e-01	k: 80155	n:420000
KS ci ratio: 1.114719e-01	ci left: 2.772024e-03	ci right 3.101559e-03	k: 1232	n:420000
EIF3E   420000 perm   164 sec   (2557 perm/sec)   p_kst 2.933333e-03   p_cons 1.908452e-01   p_joint 4.214286e-03

Joint ci ratio: 9.274646e-02	ci left: 3.945270e-03	ci right 4.331226e-03	k: 1778	n:430000
Cons ci ratio: 1.230461e-02	ci left: 1.897819e-01	ci right 1.921339e-01	k: 82111	n:430000
KS ci ratio: 1.098352e-01	ci left: 2.791225e-03	ci right 3.117855e-03	k: 1269	n:430000
EIF3E   430000 perm   170 sec   (2528 perm/sec)   p_kst 2.951163e-03   p_cons 1.909558e-01   p_joint 4.134884e-03

Joint ci ratio: 8.568613e-02	ci left: 4.531178e-03	ci right 4.939023e-03	k: 2082	n:440000
Cons ci ratio: 1.216180e-02	ci left: 1.898508e-01	ci right 1.921760e-01	k: 84045	n:440000
KS ci ratio: 1.085604e-01	ci left: 2.794108e-03	ci right 3.117038e-03	k: 1299	n:440000
EIF3E   440000 perm   176 sec   (2500 perm/sec)   p_kst 2.952273e-03   p_cons 1.910114e-01   p_joint 4.731818e-03

Joint ci ratio: 8.515834e-02	ci left: 4.487024e-03	ci right 4.888283e-03	k: 2108	n:450000
Cons ci ratio: 1.203267e-02	ci left: 1.896905e-01	ci right 1.919890e-01	k: 85877	n:450000
KS ci ratio: 1.076134e-01	ci left: 2.781745e-03	ci right 3.100264e-03	k: 1322	n:450000
EIF3E   450000 perm   182 sec   (2473 perm/sec)   p_kst 2.937778e-03   p_cons 1.908378e-01   p_joint 4.684444e-03

Joint ci ratio: 8.375791e-02	ci left: 4.540573e-03	ci right 4.939617e-03	k: 2179	n:460000
Cons ci ratio: 1.190488e-02	ci left: 1.896068e-01	ci right 1.918797e-01	k: 87741	n:460000
KS ci ratio: 1.063742e-01	ci left: 2.786861e-03	ci right 3.102060e-03	k: 1353	n:460000
EIF3E   460000 perm   188 sec   (2446 perm/sec)   p_kst 2.941304e-03   p_cons 1.907413e-01   p_joint 4.736957e-03

Joint ci ratio: 8.191397e-02	ci left: 4.650251e-03	ci right 5.049508e-03	k: 2278	n:470000
Cons ci ratio: 1.177986e-02	ci left: 1.895586e-01	ci right 1.918069e-01	k: 89620	n:470000
KS ci ratio: 1.050248e-01	ci left: 2.800066e-03	ci right 3.112494e-03	k: 1388	n:470000
EIF3E   470000 perm   194 sec   (2420 perm/sec)   p_kst 2.953191e-03   p_cons 1.906809e-01   p_joint 4.846809e-03

Joint ci ratio: 8.097739e-02	ci left: 4.661540e-03	ci right 5.056973e-03	k: 2331	n:480000
Cons ci ratio: 1.165894e-02	ci left: 1.895063e-01	ci right 1.917308e-01	k: 91496	n:480000
KS ci ratio: 1.036525e-01	ci left: 2.816805e-03	ci right 3.126743e-03	k: 1425	n:480000
EIF3E   480000 perm   200 sec   (2395 perm/sec)   p_kst 2.968750e-03   p_cons 1.906167e-01   p_joint 4.856250e-03

Joint ci ratio: 8.019057e-02	ci left: 4.658392e-03	ci right 5.049539e-03	k: 2377	n:490000
Cons ci ratio: 1.154250e-02	ci left: 1.894339e-01	ci right 1.916351e-01	k: 93361	n:490000
KS ci ratio: 1.028985e-01	ci left: 2.801068e-03	ci right 3.106897e-03	k: 1446	n:490000
EIF3E   490000 perm   207 sec   (2369 perm/sec)   p_kst 2.951020e-03   p_cons 1.905327e-01   p_joint 4.851020e-03

Joint ci ratio: 7.932765e-02	ci left: 4.667150e-03	ci right 5.054621e-03	k: 2429	n:500000
Cons ci ratio: 1.142481e-02	ci left: 1.894901e-01	ci right 1.916694e-01	k: 95289	n:500000
KS ci ratio: 1.018827e-01	ci left: 2.801561e-03	ci right 3.104244e-03	k: 1475	n:500000
EIF3E   500000 perm   213 sec   (2345 perm/sec)   p_kst 2.950000e-03   p_cons 1.905780e-01   p_joint 4.858000e-03

Joint ci ratio: 7.884391e-02	ci left: 4.633295e-03	ci right 5.015501e-03	k: 2459	n:510000
Cons ci ratio: 1.131209e-02	ci left: 1.895052e-01	ci right 1.916630e-01	k: 97197	n:510000
KS ci ratio: 1.010649e-01	ci left: 2.792492e-03	ci right 3.091630e-03	k: 1499	n:510000
EIF3E   510000 perm   220 sec   (2321 perm/sec)   p_kst 2.939216e-03   p_cons 1.905824e-01   p_joint 4.821569e-03

Joint ci ratio: 7.857526e-02	ci left: 4.576236e-03	ci right 4.952391e-03	k: 2476	n:520000
Cons ci ratio: 1.120383e-02	ci left: 1.894872e-01	ci right 1.916240e-01	k: 99088	n:520000
KS ci ratio: 1.000036e-01	ci left: 2.798782e-03	ci right 3.095260e-03	k: 1531	n:520000
EIF3E   520000 perm   226 sec   (2297 perm/sec)   p_kst 2.944231e-03   p_cons 1.905538e-01   p_joint 4.761538e-03

Joint ci ratio: 7.773205e-02	ci left: 4.589789e-03	ci right 4.962826e-03	k: 2530	n:530000
Cons ci ratio: 1.110113e-02	ci left: 1.894002e-01	ci right 1.915164e-01	k: 100942	n:530000
KS ci ratio: 9.865917e-02	ci left: 2.823253e-03	ci right 3.118071e-03	k: 1573	n:530000
EIF3E   530000 perm   233 sec   (2275 perm/sec)   p_kst 2.967925e-03   p_cons 1.904566e-01   p_joint 4.773585e-03

Outputting figure to mutsig2_images.part000000000055/EIF3E.6_1390_530000_0.0029679_0.19046_0.0047736.png
                gene_name: EIF3E
               theta_stop: 0.099 
                    nperm: 530000 
                     p_ks: 0.0030 
        ci_ks_bounds_left: 0.0028 
       ci_ks_bounds_right: 0.0031 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.0048 
     ci_joint_bounds_left: 0.0046 
    ci_joint_bounds_right: 0.0050 

Current progress: 22 percent done.
EFR3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.809090e-02	ci left: 3.894823e-01	ci right 4.087765e-01	k: 3991	n:10000
Cons ci ratio: 9.224974e-03	ci left: 9.430505e-01	ci right 9.518865e-01	k: 9476	n:10000
KS ci ratio: 7.363793e-02	ci left: 2.126039e-01	ci right 2.289591e-01	k: 2207	n:10000
EFR3A   10000 perm   2 sec   (4618 perm/sec)   p_kst 2.207000e-01   p_cons 9.476000e-01   p_joint 3.991000e-01

Outputting figure to mutsig2_images.part000000000055/EFR3A.5_2558_10000_0.2207_0.9476_0.3991.png
                gene_name: EFR3A
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 24 percent done.
EHMT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.436877e-02	ci left: 8.751064e-01	ci right 8.878705e-01	k: 8816	n:10000
KS ci ratio: 1.959461e-02	ci left: 7.921247e-01	ci right 8.079001e-01	k: 8001	n:10000
EHMT1   10000 perm   2 sec   (4294 perm/sec)   p_kst 8.001000e-01   p_cons 8.816000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000055/EHMT1.5_4054_10000_0.8001_0.8816_1.png
                gene_name: EHMT1
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 27 percent done.
EIF2C3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.295449e-02	ci left: 3.445215e-01	ci right 3.633636e-01	k: 3539	n:10000
Cons ci ratio: 3.693164e-02	ci left: 5.198600e-01	ci right 5.395227e-01	k: 5297	n:10000
KS ci ratio: 6.633841e-02	ci left: 2.501382e-01	ci right 2.674026e-01	k: 2587	n:10000
EIF2C3   10000 perm   2 sec   (5163 perm/sec)   p_kst 2.587000e-01   p_cons 5.297000e-01   p_joint 3.539000e-01

Outputting figure to mutsig2_images.part000000000055/EIF2C3.5_2659_10000_0.2587_0.5297_0.3539.png
                gene_name: EIF2C3
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 29 percent done.
EIF4A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.785521e-02	ci left: 8.206616e-01	ci right 8.355467e-01	k: 8282	n:10000
Cons ci ratio: 3.774740e-02	ci left: 5.089528e-01	ci right 5.286362e-01	k: 5188	n:10000
KS ci ratio: 2.219129e-02	ci left: 7.487731e-01	ci right 7.656768e-01	k: 7573	n:10000
EIF4A1   10000 perm   2 sec   (6189 perm/sec)   p_kst 7.573000e-01   p_cons 5.188000e-01   p_joint 8.282000e-01

Outputting figure to mutsig2_images.part000000000055/EIF4A1.5_1265_10000_0.7573_0.5188_0.8282.png
                gene_name: EIF4A1
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 31 percent done.
EIF4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.332647e-02	ci left: 5.706554e-01	ci right 5.900977e-01	k: 5804	n:10000
Cons ci ratio: 2.647618e-02	ci left: 6.775056e-01	ci right 6.957856e-01	k: 6867	n:10000
KS ci ratio: 4.272236e-02	ci left: 4.472002e-01	ci right 4.668248e-01	k: 4570	n:10000
EIF4B   10000 perm   2 sec   (5411 perm/sec)   p_kst 4.570000e-01   p_cons 6.867000e-01   p_joint 5.804000e-01

Outputting figure to mutsig2_images.part000000000055/EIF4B.5_1896_10000_0.457_0.6867_0.5804.png
                gene_name: EIF4B
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 33 percent done.
EFCAB5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.607495e-02	ci left: 2.017565e-01	ci right 2.178129e-01	k: 2097	n:10000
Cons ci ratio: 1.418978e-01	ci left: 6.584842e-02	ci right 7.600325e-02	k: 708	n:10000
KS ci ratio: 1.993082e-02	ci left: 7.865466e-01	ci right 8.024815e-01	k: 7946	n:10000
EFCAB5   10000 perm   2 sec   (4175 perm/sec)   p_kst 7.946000e-01   p_cons 7.080000e-02   p_joint 2.097000e-01

Joint ci ratio: 5.132526e-02	ci left: 2.199711e-01	ci right 2.316088e-01	k: 4515	n:20000
Cons ci ratio: 9.539674e-02	ci left: 7.412433e-02	ci right 8.159894e-02	k: 1556	n:20000
KS ci ratio: 1.420085e-02	ci left: 7.864087e-01	ci right 7.977063e-01	k: 15842	n:20000
EFCAB5   20000 perm   5 sec   (3775 perm/sec)   p_kst 7.921000e-01   p_cons 7.780000e-02   p_joint 2.257500e-01

Outputting figure to mutsig2_images.part000000000055/EFCAB5.4_4771_20000_0.7921_0.0778_0.22575.png
                gene_name: EFCAB5
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.078 
      ci_cons_bounds_left: 0.074 
     ci_cons_bounds_right: 0.082 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 36 percent done.
EFHA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.209943e-02	ci left: 4.544868e-01	ci right 4.741340e-01	k: 4643	n:10000
Cons ci ratio: 9.603921e-02	ci left: 1.358995e-01	ci right 1.497093e-01	k: 1427	n:10000
KS ci ratio: 2.910462e-02	ci left: 6.351279e-01	ci right 6.539878e-01	k: 6446	n:10000
EFHA2   10000 perm   2 sec   (5240 perm/sec)   p_kst 6.446000e-01   p_cons 1.427000e-01   p_joint 4.643000e-01

Outputting figure to mutsig2_images.part000000000055/EFHA2.4_1649_10000_0.6446_0.1427_0.4643.png
                gene_name: EFHA2
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 38 percent done.
EFTUD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.304204e-02	ci left: 7.345175e-01	ci right 7.517407e-01	k: 7432	n:10000
Cons ci ratio: 4.962867e-02	ci left: 3.745520e-01	ci right 3.937155e-01	k: 3841	n:10000
KS ci ratio: 2.024777e-02	ci left: 7.812748e-01	ci right 7.973563e-01	k: 7894	n:10000
EFTUD1   10000 perm   2 sec   (4691 perm/sec)   p_kst 7.894000e-01   p_cons 3.841000e-01   p_joint 7.432000e-01

Outputting figure to mutsig2_images.part000000000055/EFTUD1.4_3439_10000_0.7894_0.3841_0.7432.png
                gene_name: EFTUD1
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 40 percent done.
EFCAB7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.446792e-02	ci left: 4.274473e-01	ci right 4.469893e-01	k: 4372	n:10000
Cons ci ratio: 3.307401e-02	ci left: 5.743665e-01	ci right 5.937845e-01	k: 5841	n:10000
KS ci ratio: 5.343254e-02	ci left: 3.404477e-01	ci right 3.592399e-01	k: 3498	n:10000
EFCAB7   10000 perm   2 sec   (6035 perm/sec)   p_kst 3.498000e-01   p_cons 5.841000e-01   p_joint 4.372000e-01

Outputting figure to mutsig2_images.part000000000055/EFCAB7.3_1942_10000_0.3498_0.5841_0.4372.png
                gene_name: EFCAB7
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 42 percent done.
EFEMP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.185349e-01	ci left: 2.774707e-03	ci right 5.327611e-03	k: 39	n:10000
Cons ci ratio: 1.731320e-02	ci left: 8.294091e-01	ci right 8.439942e-01	k: 8368	n:10000
KS ci ratio: 2.262761e+00	ci left: 2.422185e-05	ci right 7.222801e-04	k: 2	n:10000
EFEMP2   10000 perm   2 sec   (5710 perm/sec)   p_kst 2.000000e-04   p_cons 8.368000e-01   p_joint 3.900000e-03

Joint ci ratio: 5.278323e-01	ci left: 2.028954e-03	ci right 3.521464e-03	k: 54	n:20000
Cons ci ratio: 1.215420e-02	ci left: 8.335790e-01	ci right 8.438223e-01	k: 16775	n:20000
KS ci ratio: 1.131239e+00	ci left: 2.745890e-04	ci right 9.838883e-04	k: 11	n:20000
EFEMP2   20000 perm   4 sec   (5133 perm/sec)   p_kst 5.500000e-04   p_cons 8.387500e-01   p_joint 2.700000e-03

Joint ci ratio: 5.653410e-01	ci left: 1.151348e-03	ci right 2.082796e-03	k: 47	n:30000
Cons ci ratio: 1.002439e-02	ci left: 8.317609e-01	ci right 8.401740e-01	k: 25080	n:30000
KS ci ratio: 9.504544e-01	ci left: 3.048758e-04	ci right 8.659558e-04	k: 16	n:30000
EFEMP2   30000 perm   6 sec   (4896 perm/sec)   p_kst 5.333333e-04   p_cons 8.360000e-01   p_joint 1.566667e-03

Joint ci ratio: 3.618692e-01	ci left: 2.396900e-03	ci right 3.477268e-03	k: 116	n:40000
Cons ci ratio: 8.632987e-03	ci left: 8.338730e-01	ci right 8.411279e-01	k: 33501	n:40000
KS ci ratio: 8.355065e-01	ci left: 3.250117e-04	ci right 8.024069e-04	k: 21	n:40000
EFEMP2   40000 perm   8 sec   (4736 perm/sec)   p_kst 5.250000e-04   p_cons 8.375250e-01   p_joint 2.900000e-03

Joint ci ratio: 3.604356e-01	ci left: 1.935616e-03	ci right 2.803777e-03	k: 117	n:50000
Cons ci ratio: 7.747766e-03	ci left: 8.333297e-01	ci right 8.398312e-01	k: 41830	n:50000
KS ci ratio: 7.277073e-01	ci left: 3.721472e-04	ci right 8.092550e-04	k: 28	n:50000
EFEMP2   50000 perm   11 sec   (4603 perm/sec)   p_kst 5.600000e-04   p_cons 8.366000e-01   p_joint 2.340000e-03

Joint ci ratio: 3.786195e-01	ci left: 1.446622e-03	ci right 2.136337e-03	k: 106	n:60000
Cons ci ratio: 7.048963e-03	ci left: 8.345403e-01	ci right 8.404603e-01	k: 50251	n:60000
KS ci ratio: 6.442399e-01	ci left: 4.202669e-04	ci right 8.305571e-04	k: 36	n:60000
EFEMP2   60000 perm   13 sec   (4494 perm/sec)   p_kst 6.000000e-04   p_cons 8.375167e-01   p_joint 1.766667e-03

Joint ci ratio: 4.224417e-01	ci left: 9.700399e-04	ci right 1.501267e-03	k: 85	n:70000
Cons ci ratio: 6.534674e-03	ci left: 8.344009e-01	ci right 8.398855e-01	k: 58601	n:70000
KS ci ratio: 6.046833e-01	ci left: 4.203504e-04	ci right 7.945046e-04	k: 41	n:70000
EFEMP2   70000 perm   16 sec   (4388 perm/sec)   p_kst 5.857143e-04   p_cons 8.371571e-01   p_joint 1.214286e-03

Joint ci ratio: 2.417800e-01	ci left: 2.879202e-03	ci right 3.682488e-03	k: 261	n:80000
Cons ci ratio: 6.117541e-03	ci left: 8.343591e-01	ci right 8.394914e-01	k: 66955	n:80000
KS ci ratio: 4.524276e-01	ci left: 7.263916e-04	ci right 1.161116e-03	k: 74	n:80000
EFEMP2   80000 perm   19 sec   (4300 perm/sec)   p_kst 9.250000e-04   p_cons 8.369375e-01   p_joint 3.262500e-03

Joint ci ratio: 2.294214e-01	ci left: 2.862500e-03	ci right 3.614526e-03	k: 290	n:90000
Cons ci ratio: 5.742613e-03	ci left: 8.356993e-01	ci right 8.405233e-01	k: 75431	n:90000
KS ci ratio: 4.225001e-01	ci left: 7.544562e-04	ci right 1.167690e-03	k: 85	n:90000
EFEMP2   90000 perm   21 sec   (4214 perm/sec)   p_kst 9.444444e-04   p_cons 8.381222e-01   p_joint 3.222222e-03

Joint ci ratio: 2.559571e-01	ci left: 2.040691e-03	ci right 2.648750e-03	k: 233	n:100000
Cons ci ratio: 5.433900e-03	ci left: 8.365262e-01	ci right 8.410941e-01	k: 83882	n:100000
KS ci ratio: 3.998892e-01	ci left: 7.686726e-04	ci right 1.161203e-03	k: 95	n:100000
EFEMP2   100000 perm   24 sec   (4136 perm/sec)   p_kst 9.500000e-04   p_cons 8.388200e-01   p_joint 2.330000e-03

Joint ci ratio: 2.471446e-01	ci left: 1.999973e-03	ci right 2.572230e-03	k: 250	n:110000
Cons ci ratio: 5.181921e-03	ci left: 8.365861e-01	ci right 8.409415e-01	k: 92265	n:110000
KS ci ratio: 3.805588e-01	ci left: 7.807879e-04	ci right 1.155419e-03	k: 105	n:110000
EFEMP2   110000 perm   27 sec   (4061 perm/sec)   p_kst 9.545455e-04   p_cons 8.387727e-01   p_joint 2.272727e-03

Joint ci ratio: 2.517319e-01	ci left: 1.762969e-03	ci right 2.278240e-03	k: 241	n:120000
Cons ci ratio: 4.954080e-03	ci left: 8.370757e-01	ci right 8.412412e-01	k: 100700	n:120000
KS ci ratio: 3.606863e-01	ci left: 8.064162e-04	ci right 1.168399e-03	k: 117	n:120000
EFEMP2   120000 perm   30 sec   (3991 perm/sec)   p_kst 9.750000e-04   p_cons 8.391667e-01   p_joint 2.008333e-03

Joint ci ratio: 2.396527e-01	ci left: 1.807835e-03	ci right 2.307102e-03	k: 266	n:130000
Cons ci ratio: 4.754387e-03	ci left: 8.374623e-01	ci right 8.414610e-01	k: 109131	n:130000
KS ci ratio: 3.463104e-01	ci left: 8.144798e-04	ci right 1.162245e-03	k: 127	n:130000
EFEMP2   130000 perm   33 sec   (3921 perm/sec)   p_kst 9.769231e-04   p_cons 8.394692e-01   p_joint 2.046154e-03

Joint ci ratio: 2.383326e-01	ci left: 1.698837e-03	ci right 2.165035e-03	k: 269	n:140000
Cons ci ratio: 4.580795e-03	ci left: 8.375738e-01	ci right 8.414264e-01	k: 117531	n:140000
KS ci ratio: 3.397444e-01	ci left: 7.889387e-04	ci right 1.118010e-03	k: 132	n:140000
EFEMP2   140000 perm   36 sec   (3852 perm/sec)   p_kst 9.428571e-04   p_cons 8.395071e-01   p_joint 1.921429e-03

Joint ci ratio: 2.114173e-01	ci left: 2.044968e-03	ci right 2.534588e-03	k: 342	n:150000
Cons ci ratio: 4.425255e-03	ci left: 8.376526e-01	ci right 8.413743e-01	k: 125928	n:150000
KS ci ratio: 3.397553e-01	ci left: 7.363392e-04	ci right 1.043482e-03	k: 132	n:150000
EFEMP2   150000 perm   40 sec   (3787 perm/sec)   p_kst 8.800000e-04   p_cons 8.395200e-01   p_joint 2.280000e-03

Joint ci ratio: 2.096032e-01	ci left: 1.952671e-03	ci right 2.415664e-03	k: 348	n:160000
Cons ci ratio: 4.282666e-03	ci left: 8.378428e-01	ci right 8.414449e-01	k: 134344	n:160000
KS ci ratio: 3.299770e-01	ci left: 7.361149e-04	ci right 1.032453e-03	k: 140	n:160000
EFEMP2   160000 perm   43 sec   (3726 perm/sec)   p_kst 8.750000e-04   p_cons 8.396500e-01   p_joint 2.175000e-03

Joint ci ratio: 2.063827e-01	ci left: 1.899138e-03	ci right 2.341646e-03	k: 359	n:170000
Cons ci ratio: 4.160375e-03	ci left: 8.375337e-01	ci right 8.410312e-01	k: 142679	n:170000
KS ci ratio: 3.199245e-01	ci left: 7.414382e-04	ci right 1.028964e-03	k: 149	n:170000
EFEMP2   170000 perm   46 sec   (3666 perm/sec)   p_kst 8.764706e-04   p_cons 8.392882e-01   p_joint 2.111765e-03

Joint ci ratio: 2.114578e-01	ci left: 1.704108e-03	ci right 2.112202e-03	k: 342	n:180000
Cons ci ratio: 4.041981e-03	ci left: 8.376621e-01	ci right 8.410603e-01	k: 151086	n:180000
KS ci ratio: 3.117207e-01	ci left: 7.411696e-04	ci right 1.019755e-03	k: 157	n:180000
EFEMP2   180000 perm   50 sec   (3605 perm/sec)   p_kst 8.722222e-04   p_cons 8.393667e-01   p_joint 1.900000e-03

Joint ci ratio: 1.845711e-01	ci left: 2.149825e-03	ci right 2.591893e-03	k: 449	n:190000
Cons ci ratio: 3.935914e-03	ci left: 8.375880e-01	ci right 8.408964e-01	k: 159457	n:190000
KS ci ratio: 3.050382e-01	ci left: 7.361520e-04	ci right 1.005768e-03	k: 164	n:190000
EFEMP2   190000 perm   54 sec   (3550 perm/sec)   p_kst 8.631579e-04   p_cons 8.392474e-01   p_joint 2.363158e-03

Joint ci ratio: 1.807960e-01	ci left: 2.132988e-03	ci right 2.561640e-03	k: 468	n:200000
Cons ci ratio: 3.838633e-03	ci left: 8.374622e-01	ci right 8.406880e-01	k: 167816	n:200000
KS ci ratio: 2.979024e-01	ci left: 7.363195e-04	ci right 9.984958e-04	k: 172	n:200000
EFEMP2   200000 perm   57 sec   (3493 perm/sec)   p_kst 8.600000e-04   p_cons 8.390800e-01   p_joint 2.340000e-03

Joint ci ratio: 1.968011e-01	ci left: 1.700160e-03	ci right 2.075708e-03	k: 395	n:210000
Cons ci ratio: 3.748222e-03	ci left: 8.373493e-01	ci right 8.404985e-01	k: 176175	n:210000
KS ci ratio: 2.873003e-01	ci left: 7.586209e-04	ci right 1.017381e-03	k: 185	n:210000
EFEMP2   210000 perm   61 sec   (3425 perm/sec)   p_kst 8.809524e-04   p_cons 8.389286e-01   p_joint 1.880952e-03

Joint ci ratio: 1.970590e-01	ci left: 1.618552e-03	ci right 1.976597e-03	k: 394	n:220000
Cons ci ratio: 3.658488e-03	ci left: 8.376491e-01	ci right 8.407238e-01	k: 184622	n:220000
KS ci ratio: 2.798746e-01	ci left: 7.663611e-04	ci right 1.019814e-03	k: 195	n:220000
EFEMP2   220000 perm   65 sec   (3364 perm/sec)   p_kst 8.863636e-04   p_cons 8.391909e-01   p_joint 1.790909e-03

Joint ci ratio: 2.078909e-01	ci left: 1.383060e-03	ci right 1.707970e-03	k: 354	n:230000
Cons ci ratio: 3.576855e-03	ci left: 8.377752e-01	ci right 8.407815e-01	k: 193035	n:230000
KS ci ratio: 2.777606e-01	ci left: 7.451714e-04	ci right 9.894291e-04	k: 198	n:230000
EFEMP2   230000 perm   69 sec   (3317 perm/sec)   p_kst 8.608696e-04   p_cons 8.392826e-01   p_joint 1.539130e-03

Joint ci ratio: 2.076050e-01	ci left: 1.329378e-03	ci right 1.641193e-03	k: 355	n:240000
Cons ci ratio: 3.503914e-03	ci left: 8.376238e-01	ci right 8.405680e-01	k: 201384	n:240000
KS ci ratio: 2.730015e-01	ci left: 7.412753e-04	ci right 9.793788e-04	k: 205	n:240000
EFEMP2   240000 perm   73 sec   (3267 perm/sec)   p_kst 8.541667e-04   p_cons 8.391000e-01   p_joint 1.479167e-03

Joint ci ratio: 2.076112e-01	ci left: 1.276199e-03	ci right 1.575551e-03	k: 355	n:250000
Cons ci ratio: 3.430933e-03	ci left: 8.378264e-01	ci right 8.407098e-01	k: 209818	n:250000
KS ci ratio: 2.684790e-01	ci left: 7.377237e-04	ci right 9.700999e-04	k: 212	n:250000
EFEMP2   250000 perm   78 sec   (3223 perm/sec)   p_kst 8.480000e-04   p_cons 8.392720e-01   p_joint 1.420000e-03

Joint ci ratio: 2.044775e-01	ci left: 1.267239e-03	ci right 1.559441e-03	k: 366	n:260000
Cons ci ratio: 3.366930e-03	ci left: 8.376433e-01	ci right 8.404722e-01	k: 218156	n:260000
KS ci ratio: 2.641740e-01	ci left: 7.344753e-04	ci right 9.615051e-04	k: 219	n:260000
EFEMP2   260000 perm   82 sec   (3179 perm/sec)   p_kst 8.423077e-04   p_cons 8.390615e-01   p_joint 1.407692e-03

Joint ci ratio: 2.020174e-01	ci left: 1.251940e-03	ci right 1.536713e-03	k: 375	n:270000
Cons ci ratio: 3.301753e-03	ci left: 8.378535e-01	ci right 8.406281e-01	k: 226596	n:270000
KS ci ratio: 2.606449e-01	ci left: 7.280327e-04	ci right 9.495749e-04	k: 225	n:270000
EFEMP2   270000 perm   86 sec   (3136 perm/sec)   p_kst 8.333333e-04   p_cons 8.392444e-01   p_joint 1.388889e-03

Joint ci ratio: 1.986134e-01	ci left: 1.251328e-03	ci right 1.530585e-03	k: 388	n:280000
Cons ci ratio: 3.243048e-03	ci left: 8.378126e-01	ci right 8.405376e-01	k: 234970	n:280000
KS ci ratio: 2.561509e-01	ci left: 7.287527e-04	ci right 9.460793e-04	k: 233	n:280000
EFEMP2   280000 perm   90 sec   (3094 perm/sec)   p_kst 8.321429e-04   p_cons 8.391786e-01   p_joint 1.385714e-03

Joint ci ratio: 1.958644e-01	ci left: 1.244236e-03	ci right 1.517608e-03	k: 399	n:290000
Cons ci ratio: 3.188343e-03	ci left: 8.376918e-01	ci right 8.403704e-01	k: 243320	n:290000
KS ci ratio: 2.508463e-01	ci left: 7.359159e-04	ci right 9.501242e-04	k: 243	n:290000
EFEMP2   290000 perm   95 sec   (3054 perm/sec)   p_kst 8.379310e-04   p_cons 8.390345e-01   p_joint 1.375862e-03

Joint ci ratio: 1.842420e-01	ci left: 1.367863e-03	ci right 1.648575e-03	k: 451	n:300000
Cons ci ratio: 3.135115e-03	ci left: 8.376832e-01	ci right 8.403169e-01	k: 251701	n:300000
KS ci ratio: 2.444177e-01	ci left: 7.520309e-04	ci right 9.644690e-04	k: 256	n:300000
EFEMP2   300000 perm   99 sec   (3016 perm/sec)   p_kst 8.533333e-04   p_cons 8.390033e-01   p_joint 1.503333e-03

Joint ci ratio: 1.840428e-01	ci left: 1.326813e-03	ci right 1.598773e-03	k: 452	n:310000
Cons ci ratio: 3.084503e-03	ci left: 8.376723e-01	ci right 8.402633e-01	k: 260081	n:310000
KS ci ratio: 2.411562e-01	ci left: 7.489787e-04	ci right 9.573090e-04	k: 263	n:310000
EFEMP2   310000 perm   104 sec   (2976 perm/sec)   p_kst 8.483871e-04   p_cons 8.389710e-01   p_joint 1.458065e-03

Joint ci ratio: 1.812633e-01	ci left: 1.327100e-03	ci right 1.594559e-03	k: 466	n:320000
Cons ci ratio: 3.035037e-03	ci left: 8.377721e-01	ci right 8.403217e-01	k: 268496	n:320000
KS ci ratio: 2.371476e-01	ci left: 7.520131e-04	ci right 9.572000e-04	k: 272	n:320000
EFEMP2   320000 perm   109 sec   (2937 perm/sec)   p_kst 8.500000e-04   p_cons 8.390500e-01   p_joint 1.456250e-03

Joint ci ratio: 1.791665e-01	ci left: 1.318714e-03	ci right 1.581075e-03	k: 477	n:330000
Cons ci ratio: 2.987675e-03	ci left: 8.378844e-01	ci right 8.403945e-01	k: 276917	n:330000
KS ci ratio: 2.350066e-01	ci left: 7.434798e-04	ci right 9.442406e-04	k: 277	n:330000
EFEMP2   330000 perm   114 sec   (2900 perm/sec)   p_kst 8.393939e-04   p_cons 8.391424e-01   p_joint 1.445455e-03

Joint ci ratio: 1.758845e-01	ci left: 1.330518e-03	ci right 1.589863e-03	k: 495	n:340000
Cons ci ratio: 2.943039e-03	ci left: 8.379373e-01	ci right 8.404099e-01	k: 285320	n:340000
KS ci ratio: 2.321031e-01	ci left: 7.409962e-04	ci right 9.382597e-04	k: 284	n:340000
EFEMP2   340000 perm   119 sec   (2863 perm/sec)   p_kst 8.352941e-04   p_cons 8.391765e-01   p_joint 1.455882e-03

Joint ci ratio: 1.799293e-01	ci left: 1.232439e-03	ci right 1.478793e-03	k: 473	n:350000
Cons ci ratio: 2.899670e-03	ci left: 8.380504e-01	ci right 8.404868e-01	k: 293745	n:350000
KS ci ratio: 2.300946e-01	ci left: 7.332833e-04	ci right 9.265641e-04	k: 289	n:350000
EFEMP2   350000 perm   124 sec   (2827 perm/sec)   p_kst 8.257143e-04   p_cons 8.392714e-01   p_joint 1.351429e-03

Joint ci ratio: 1.778778e-01	ci left: 1.227391e-03	ci right 1.469638e-03	k: 484	n:360000
Cons ci ratio: 2.858575e-03	ci left: 8.381185e-01	ci right 8.405205e-01	k: 302156	n:360000
KS ci ratio: 2.277514e-01	ci left: 7.286250e-04	ci right 9.184474e-04	k: 295	n:360000
EFEMP2   360000 perm   129 sec   (2793 perm/sec)   p_kst 8.194444e-04   p_cons 8.393222e-01   p_joint 1.344444e-03

Joint ci ratio: 1.751890e-01	ci left: 1.232968e-03	ci right 1.472248e-03	k: 499	n:370000
Cons ci ratio: 2.820732e-03	ci left: 8.380340e-01	ci right 8.404039e-01	k: 310512	n:370000
KS ci ratio: 2.239985e-01	ci left: 7.344306e-04	ci right 9.221778e-04	k: 305	n:370000
EFEMP2   370000 perm   134 sec   (2759 perm/sec)   p_kst 8.243243e-04   p_cons 8.392216e-01   p_joint 1.348649e-03

Joint ci ratio: 1.647928e-01	ci left: 1.364311e-03	ci right 1.611812e-03	k: 564	n:380000
Cons ci ratio: 2.781801e-03	ci left: 8.382023e-01	ci right 8.405399e-01	k: 318962	n:380000
KS ci ratio: 2.211267e-01	ci left: 7.349826e-04	ci right 9.201342e-04	k: 313	n:380000
EFEMP2   380000 perm   139 sec   (2727 perm/sec)   p_kst 8.236842e-04   p_cons 8.393737e-01   p_joint 1.484211e-03

Joint ci ratio: 1.499731e-01	ci left: 1.617555e-03	ci right 1.882244e-03	k: 681	n:390000
Cons ci ratio: 2.745115e-03	ci left: 8.382953e-01	ci right 8.406022e-01	k: 327386	n:390000
KS ci ratio: 2.187027e-01	ci left: 7.330969e-04	ci right 9.154770e-04	k: 320	n:390000
EFEMP2   390000 perm   145 sec   (2694 perm/sec)   p_kst 8.205128e-04   p_cons 8.394513e-01   p_joint 1.746154e-03

Joint ci ratio: 1.476103e-01	ci left: 1.630069e-03	ci right 1.892233e-03	k: 703	n:400000
Cons ci ratio: 2.710898e-03	ci left: 8.382785e-01	ci right 8.405566e-01	k: 335768	n:400000
KS ci ratio: 2.163568e-01	ci left: 7.313160e-04	ci right 9.110421e-04	k: 327	n:400000
EFEMP2   400000 perm   150 sec   (2663 perm/sec)   p_kst 8.175000e-04   p_cons 8.394200e-01   p_joint 1.757500e-03

Joint ci ratio: 1.608585e-01	ci left: 1.329992e-03	ci right 1.564950e-03	k: 592	n:410000
Cons ci ratio: 2.678826e-03	ci left: 8.381722e-01	ci right 8.404230e-01	k: 344113	n:410000
KS ci ratio: 2.137656e-01	ci left: 7.319403e-04	ci right 9.093831e-04	k: 335	n:410000
EFEMP2   410000 perm   156 sec   (2631 perm/sec)   p_kst 8.170732e-04   p_cons 8.393000e-01   p_joint 1.443902e-03

Joint ci ratio: 1.589927e-01	ci left: 1.330324e-03	ci right 1.562355e-03	k: 606	n:420000
Cons ci ratio: 2.646159e-03	ci left: 8.382455e-01	ci right 8.404689e-01	k: 352531	n:420000
KS ci ratio: 2.112654e-01	ci left: 7.325471e-04	ci right 9.077910e-04	k: 343	n:420000
EFEMP2   420000 perm   161 sec   (2602 perm/sec)   p_kst 8.166667e-04   p_cons 8.393595e-01   p_joint 1.442857e-03

Joint ci ratio: 1.564354e-01	ci left: 1.344063e-03	ci right 1.574366e-03	k: 626	n:430000
Cons ci ratio: 2.614906e-03	ci left: 8.382898e-01	ci right 8.404870e-01	k: 360938	n:430000
KS ci ratio: 2.082596e-01	ci left: 7.375456e-04	ci right 9.111550e-04	k: 353	n:430000
EFEMP2   430000 perm   167 sec   (2572 perm/sec)   p_kst 8.209302e-04   p_cons 8.393907e-01   p_joint 1.455814e-03

Joint ci ratio: 1.545970e-01	ci left: 1.346281e-03	ci right 1.574001e-03	k: 641	n:440000
Cons ci ratio: 2.585934e-03	ci left: 8.382069e-01	ci right 8.403795e-01	k: 369290	n:440000
KS ci ratio: 2.062309e-01	ci left: 7.358666e-04	ci right 9.071806e-04	k: 360	n:440000
EFEMP2   440000 perm   173 sec   (2544 perm/sec)   p_kst 8.181818e-04   p_cons 8.392955e-01   p_joint 1.456818e-03

Joint ci ratio: 1.525895e-01	ci left: 1.352690e-03	ci right 1.578252e-03	k: 658	n:450000
Cons ci ratio: 2.557818e-03	ci left: 8.381368e-01	ci right 8.402855e-01	k: 377646	n:450000
KS ci ratio: 2.039831e-01	ci left: 7.363787e-04	ci right 9.057106e-04	k: 368	n:450000
EFEMP2   450000 perm   179 sec   (2517 perm/sec)   p_kst 8.177778e-04   p_cons 8.392133e-01   p_joint 1.462222e-03

Joint ci ratio: 1.507700e-01	ci left: 1.356746e-03	ci right 1.580044e-03	k: 674	n:460000
Cons ci ratio: 2.530680e-03	ci left: 8.380611e-01	ci right 8.401868e-01	k: 385998	n:460000
KS ci ratio: 2.015400e-01	ci left: 7.389425e-04	ci right 9.065783e-04	k: 377	n:460000
EFEMP2   460000 perm   185 sec   (2489 perm/sec)   p_kst 8.195652e-04   p_cons 8.391261e-01   p_joint 1.465217e-03

Joint ci ratio: 1.530601e-01	ci left: 1.286940e-03	ci right 1.502261e-03	k: 654	n:470000
Cons ci ratio: 2.502494e-03	ci left: 8.381936e-01	ci right 8.402959e-01	k: 394446	n:470000
KS ci ratio: 1.981602e-01	ci left: 7.494963e-04	ci right 9.163307e-04	k: 390	n:470000
EFEMP2   470000 perm   191 sec   (2463 perm/sec)   p_kst 8.297872e-04   p_cons 8.392468e-01   p_joint 1.391489e-03

Joint ci ratio: 1.512240e-01	ci left: 1.292193e-03	ci right 1.505565e-03	k: 670	n:480000
Cons ci ratio: 2.476566e-03	ci left: 8.381744e-01	ci right 8.402548e-01	k: 402824	n:480000
KS ci ratio: 1.969059e-01	ci left: 7.437831e-04	ci right 9.081720e-04	k: 395	n:480000
EFEMP2   480000 perm   197 sec   (2436 perm/sec)   p_kst 8.229167e-04   p_cons 8.392167e-01   p_joint 1.395833e-03

Joint ci ratio: 1.492349e-01	ci left: 1.301176e-03	ci right 1.512953e-03	k: 688	n:490000
Cons ci ratio: 2.451093e-03	ci left: 8.381930e-01	ci right 8.402520e-01	k: 411220	n:490000
KS ci ratio: 1.947057e-01	ci left: 7.460708e-04	ci right 9.089044e-04	k: 404	n:490000
EFEMP2   490000 perm   203 sec   (2410 perm/sec)   p_kst 8.244898e-04   p_cons 8.392245e-01   p_joint 1.404082e-03

Joint ci ratio: 1.484836e-01	ci left: 1.288631e-03	ci right 1.497216e-03	k: 695	n:500000
Cons ci ratio: 2.426265e-03	ci left: 8.382249e-01	ci right 8.402631e-01	k: 419623	n:500000
KS ci ratio: 1.939895e-01	ci left: 7.368571e-04	ci right 8.970184e-04	k: 407	n:500000
EFEMP2   500000 perm   210 sec   (2385 perm/sec)   p_kst 8.140000e-04   p_cons 8.392460e-01   p_joint 1.390000e-03

Joint ci ratio: 1.473244e-01	ci left: 1.284134e-03	ci right 1.490225e-03	k: 706	n:510000
Cons ci ratio: 2.402647e-03	ci left: 8.382027e-01	ci right 8.402209e-01	k: 427999	n:510000
KS ci ratio: 1.928123e-01	ci left: 7.317380e-04	ci right 8.897081e-04	k: 412	n:510000
EFEMP2   510000 perm   216 sec   (2361 perm/sec)   p_kst 8.078431e-04   p_cons 8.392137e-01   p_joint 1.384314e-03

Joint ci ratio: 1.475355e-01	ci left: 1.255733e-03	ci right 1.457581e-03	k: 704	n:520000
Cons ci ratio: 2.379198e-03	ci left: 8.382392e-01	ci right 8.402378e-01	k: 436405	n:520000
KS ci ratio: 1.916562e-01	ci left: 7.268186e-04	ci right 8.826761e-04	k: 417	n:520000
EFEMP2   520000 perm   223 sec   (2337 perm/sec)   p_kst 8.019231e-04   p_cons 8.392404e-01   p_joint 1.353846e-03

Joint ci ratio: 1.467062e-01	ci left: 1.246578e-03	ci right 1.445729e-03	k: 712	n:530000
Cons ci ratio: 2.356702e-03	ci left: 8.382423e-01	ci right 8.402219e-01	k: 444794	n:530000
KS ci ratio: 1.902957e-01	ci left: 7.238844e-04	ci right 8.778834e-04	k: 423	n:530000
EFEMP2   530000 perm   229 sec   (2314 perm/sec)   p_kst 7.981132e-04   p_cons 8.392340e-01   p_joint 1.343396e-03

Joint ci ratio: 1.474345e-01	ci left: 1.211006e-03	ci right 1.405519e-03	k: 705	n:540000
Cons ci ratio: 2.334527e-03	ci left: 8.382806e-01	ci right 8.402417e-01	k: 453202	n:540000
KS ci ratio: 1.876580e-01	ci left: 7.316504e-04	ci right 8.848982e-04	k: 435	n:540000
EFEMP2   540000 perm   236 sec   (2291 perm/sec)   p_kst 8.055556e-04   p_cons 8.392630e-01   p_joint 1.305556e-03

Joint ci ratio: 1.465042e-01	ci left: 1.204749e-03	ci right 1.396929e-03	k: 714	n:550000
Cons ci ratio: 2.312344e-03	ci left: 8.383905e-01	ci right 8.403332e-01	k: 461650	n:550000
KS ci ratio: 1.861696e-01	ci left: 7.304793e-04	ci right 8.821314e-04	k: 442	n:550000
EFEMP2   550000 perm   242 sec   (2269 perm/sec)   p_kst 8.036364e-04   p_cons 8.393636e-01   p_joint 1.298182e-03

Joint ci ratio: 1.449910e-01	ci left: 1.209045e-03	ci right 1.399746e-03	k: 729	n:560000
Cons ci ratio: 2.292540e-03	ci left: 8.382889e-01	ci right 8.402147e-01	k: 469982	n:560000
KS ci ratio: 1.841030e-01	ci left: 7.344648e-04	ci right 8.850626e-04	k: 452	n:560000
EFEMP2   560000 perm   249 sec   (2246 perm/sec)   p_kst 8.071429e-04   p_cons 8.392536e-01   p_joint 1.301786e-03

Joint ci ratio: 1.469196e-01	ci left: 1.155715e-03	ci right 1.340642e-03	k: 710	n:570000
Cons ci ratio: 2.273043e-03	ci left: 8.382139e-01	ci right 8.401230e-01	k: 478327	n:570000
KS ci ratio: 1.834972e-01	ci left: 7.266001e-04	ci right 8.750406e-04	k: 455	n:570000
EFEMP2   570000 perm   256 sec   (2224 perm/sec)   p_kst 7.982456e-04   p_cons 8.391702e-01   p_joint 1.245614e-03

Joint ci ratio: 1.477558e-01	ci left: 1.122503e-03	ci right 1.303228e-03	k: 702	n:580000
Cons ci ratio: 2.253301e-03	ci left: 8.382296e-01	ci right 8.401222e-01	k: 486723	n:580000
KS ci ratio: 1.823021e-01	ci left: 7.239437e-04	ci right 8.707718e-04	k: 461	n:580000
EFEMP2   580000 perm   263 sec   (2202 perm/sec)   p_kst 7.948276e-04   p_cons 8.391776e-01   p_joint 1.210345e-03

Joint ci ratio: 1.463060e-01	ci left: 1.126334e-03	ci right 1.305740e-03	k: 716	n:590000
Cons ci ratio: 2.234106e-03	ci left: 8.382398e-01	ci right 8.401162e-01	k: 495116	n:590000
KS ci ratio: 1.807439e-01	ci left: 7.246167e-04	ci right 8.701877e-04	k: 469	n:590000
EFEMP2   590000 perm   271 sec   (2181 perm/sec)   p_kst 7.949153e-04   p_cons 8.391797e-01   p_joint 1.213559e-03

Joint ci ratio: 1.405380e-01	ci left: 1.203978e-03	ci right 1.387558e-03	k: 776	n:600000
Cons ci ratio: 2.216119e-03	ci left: 8.381611e-01	ci right 8.400223e-01	k: 503456	n:600000
KS ci ratio: 1.794130e-01	ci left: 7.236805e-04	ci right 8.678766e-04	k: 476	n:600000
EFEMP2   600000 perm   278 sec   (2160 perm/sec)   p_kst 7.933333e-04   p_cons 8.390933e-01   p_joint 1.293333e-03

Joint ci ratio: 1.392886e-01	ci left: 1.206388e-03	ci right 1.388565e-03	k: 790	n:610000
Cons ci ratio: 2.197531e-03	ci left: 8.382116e-01	ci right 8.400573e-01	k: 511873	n:610000
KS ci ratio: 1.782954e-01	ci left: 7.212125e-04	ci right 8.639252e-04	k: 482	n:610000
EFEMP2   610000 perm   285 sec   (2141 perm/sec)   p_kst 7.901639e-04   p_cons 8.391361e-01   p_joint 1.295082e-03

Joint ci ratio: 1.400008e-01	ci left: 1.174476e-03	ci right 1.352817e-03	k: 782	n:620000
Cons ci ratio: 2.179585e-03	ci left: 8.382380e-01	ci right 8.400685e-01	k: 520276	n:620000
KS ci ratio: 1.771985e-01	ci left: 7.188268e-04	ci right 8.600986e-04	k: 488	n:620000
EFEMP2   620000 perm   292 sec   (2121 perm/sec)   p_kst 7.870968e-04   p_cons 8.391548e-01   p_joint 1.261290e-03

Joint ci ratio: 1.382455e-01	ci left: 1.186475e-03	ci right 1.364193e-03	k: 802	n:630000
Cons ci ratio: 2.162110e-03	ci left: 8.382587e-01	ci right 8.400747e-01	k: 528676	n:630000
KS ci ratio: 1.752380e-01	ci left: 7.241073e-04	ci right 8.646757e-04	k: 499	n:630000
EFEMP2   630000 perm   300 sec   (2100 perm/sec)   p_kst 7.920635e-04   p_cons 8.391683e-01   p_joint 1.273016e-03

Joint ci ratio: 1.373929e-01	ci left: 1.183023e-03	ci right 1.359041e-03	k: 812	n:640000
Cons ci ratio: 2.144962e-03	ci left: 8.382899e-01	ci right 8.400914e-01	k: 537083	n:640000
KS ci ratio: 1.743687e-01	ci left: 7.202637e-04	ci right 8.593192e-04	k: 504	n:640000
EFEMP2   640000 perm   307 sec   (2081 perm/sec)   p_kst 7.875000e-04   p_cons 8.391922e-01   p_joint 1.268750e-03

Joint ci ratio: 1.363074e-01	ci left: 1.184138e-03	ci right 1.358817e-03	k: 825	n:650000
Cons ci ratio: 2.128203e-03	ci left: 8.383216e-01	ci right 8.401092e-01	k: 545491	n:650000
KS ci ratio: 1.726673e-01	ci left: 7.238993e-04	ci right 8.621509e-04	k: 514	n:650000
EFEMP2   650000 perm   315 sec   (2062 perm/sec)   p_kst 7.907692e-04   p_cons 8.392169e-01   p_joint 1.269231e-03

Joint ci ratio: 1.354090e-01	ci left: 1.182296e-03	ci right 1.355462e-03	k: 836	n:660000
Cons ci ratio: 2.111796e-03	ci left: 8.383571e-01	ci right 8.401309e-01	k: 553902	n:660000
KS ci ratio: 1.711779e-01	ci left: 7.259808e-04	ci right 8.633105e-04	k: 523	n:660000
EFEMP2   660000 perm   323 sec   (2044 perm/sec)   p_kst 7.924242e-04   p_cons 8.392455e-01   p_joint 1.266667e-03

Joint ci ratio: 1.344487e-01	ci left: 1.181956e-03	ci right 1.353746e-03	k: 848	n:670000
Cons ci ratio: 2.096005e-03	ci left: 8.383601e-01	ci right 8.401206e-01	k: 562292	n:670000
KS ci ratio: 1.700460e-01	ci left: 7.251468e-04	ci right 8.613188e-04	k: 530	n:670000
EFEMP2   670000 perm   331 sec   (2026 perm/sec)   p_kst 7.910448e-04   p_cons 8.392418e-01   p_joint 1.265672e-03

Joint ci ratio: 1.335862e-01	ci left: 1.180208e-03	ci right 1.350557e-03	k: 859	n:680000
Cons ci ratio: 2.080938e-03	ci left: 8.383144e-01	ci right 8.400621e-01	k: 570649	n:680000
KS ci ratio: 1.689362e-01	ci left: 7.243403e-04	ci right 8.593827e-04	k: 537	n:680000
EFEMP2   680000 perm   339 sec   (2008 perm/sec)   p_kst 7.897059e-04   p_cons 8.391897e-01   p_joint 1.263235e-03

Joint ci ratio: 1.320588e-01	ci left: 1.191127e-03	ci right 1.360931e-03	k: 879	n:690000
Cons ci ratio: 2.065935e-03	ci left: 8.383035e-01	ci right 8.400386e-01	k: 579029	n:690000
KS ci ratio: 1.667794e-01	ci left: 7.332804e-04	ci right 8.680690e-04	k: 551	n:690000
EFEMP2   690000 perm   346 sec   (1991 perm/sec)   p_kst 7.985507e-04   p_cons 8.391725e-01   p_joint 1.273913e-03

Joint ci ratio: 1.310206e-01	ci left: 1.193453e-03	ci right 1.362147e-03	k: 893	n:700000
Cons ci ratio: 2.051535e-03	ci left: 8.382557e-01	ci right 8.399786e-01	k: 587383	n:700000
KS ci ratio: 1.654361e-01	ci left: 7.351277e-04	ci right 8.690591e-04	k: 560	n:700000
EFEMP2   700000 perm   355 sec   (1974 perm/sec)   p_kst 8.000000e-04   p_cons 8.391186e-01   p_joint 1.275714e-03

Joint ci ratio: 1.303664e-01	ci left: 1.188905e-03	ci right 1.356052e-03	k: 902	n:710000
Cons ci ratio: 2.036688e-03	ci left: 8.383082e-01	ci right 8.400186e-01	k: 595807	n:710000
KS ci ratio: 1.645587e-01	ci left: 7.328755e-04	ci right 8.656183e-04	k: 566	n:710000
EFEMP2   710000 perm   363 sec   (1957 perm/sec)   p_kst 7.971831e-04   p_cons 8.391648e-01   p_joint 1.270423e-03

Joint ci ratio: 1.392144e-01	ci left: 1.023412e-03	ci right 1.177869e-03	k: 791	n:720000
Cons ci ratio: 2.022970e-03	ci left: 8.382506e-01	ci right 8.399494e-01	k: 604153	n:720000
KS ci ratio: 1.634099e-01	ci left: 7.333518e-04	ci right 8.651625e-04	k: 574	n:720000
EFEMP2   720000 perm   371 sec   (1940 perm/sec)   p_kst 7.972222e-04   p_cons 8.391014e-01   p_joint 1.098611e-03

Joint ci ratio: 1.204281e-01	ci left: 1.362018e-03	ci right 1.537867e-03	k: 1057	n:730000
Cons ci ratio: 2.008933e-03	ci left: 8.382743e-01	ci right 8.399614e-01	k: 612557	n:730000
KS ci ratio: 1.620070e-01	ci left: 7.364469e-04	ci right 8.675667e-04	k: 584	n:730000
EFEMP2   730000 perm   380 sec   (1923 perm/sec)   p_kst 8.000000e-04   p_cons 8.391192e-01   p_joint 1.447945e-03

Joint ci ratio: 1.195834e-01	ci left: 1.363274e-03	ci right 1.537963e-03	k: 1072	n:740000
Cons ci ratio: 1.994396e-03	ci left: 8.384044e-01	ci right 8.400795e-01	k: 621040	n:740000
KS ci ratio: 1.607749e-01	ci left: 7.381659e-04	ci right 8.684958e-04	k: 593	n:740000
EFEMP2   740000 perm   388 sec   (1907 perm/sec)   p_kst 8.013514e-04   p_cons 8.392432e-01   p_joint 1.448649e-03

Joint ci ratio: 1.217042e-01	ci left: 1.297250e-03	ci right 1.466639e-03	k: 1035	n:750000
Cons ci ratio: 1.981726e-03	ci left: 8.383186e-01	ci right 8.399828e-01	k: 629364	n:750000
KS ci ratio: 1.664832e-01	ci left: 6.771718e-04	ci right 8.014034e-04	k: 553	n:750000
EFEMP2   750000 perm   397 sec   (1891 perm/sec)   p_kst 7.373333e-04   p_cons 8.391520e-01   p_joint 1.380000e-03

Joint ci ratio: 1.207750e-01	ci left: 1.300595e-03	ci right 1.469032e-03	k: 1051	n:760000
Cons ci ratio: 1.967920e-03	ci left: 8.384236e-01	ci right 8.400765e-01	k: 637831	n:760000
KS ci ratio: 1.654413e-01	ci left: 6.770896e-04	ci right 8.004513e-04	k: 560	n:760000
EFEMP2   760000 perm   405 sec   (1875 perm/sec)   p_kst 7.368421e-04   p_cons 8.392513e-01   p_joint 1.382895e-03

Joint ci ratio: 1.199793e-01	ci left: 1.301338e-03	ci right 1.468683e-03	k: 1065	n:770000
Cons ci ratio: 1.954719e-03	ci left: 8.384817e-01	ci right 8.401236e-01	k: 646264	n:770000
KS ci ratio: 1.644188e-01	ci left: 6.770119e-04	ci right 7.995217e-04	k: 567	n:770000
EFEMP2   770000 perm   414 sec   (1859 perm/sec)   p_kst 7.363636e-04   p_cons 8.393039e-01   p_joint 1.383117e-03

Joint ci ratio: 1.257852e-01	ci left: 1.165354e-03	ci right 1.323003e-03	k: 969	n:780000
Cons ci ratio: 1.942102e-03	ci left: 8.384934e-01	ci right 8.401246e-01	k: 654662	n:780000
KS ci ratio: 1.634149e-01	ci left: 6.769385e-04	ci right 7.986136e-04	k: 574	n:780000
EFEMP2   780000 perm   423 sec   (1843 perm/sec)   p_kst 7.358974e-04   p_cons 8.393103e-01   p_joint 1.242308e-03

Joint ci ratio: 1.248236e-01	ci left: 1.168995e-03	ci right 1.325839e-03	k: 984	n:790000
Cons ci ratio: 1.929446e-03	ci left: 8.385441e-01	ci right 8.401648e-01	k: 663091	n:790000
KS ci ratio: 1.622898e-01	ci left: 6.780836e-04	ci right 7.990435e-04	k: 582	n:790000
EFEMP2   790000 perm   432 sec   (1828 perm/sec)   p_kst 7.367089e-04   p_cons 8.393557e-01   p_joint 1.245570e-03

Joint ci ratio: 1.236981e-01	ci left: 1.176183e-03	ci right 1.332464e-03	k: 1002	n:800000
Cons ci ratio: 1.917283e-03	ci left: 8.385585e-01	ci right 8.401690e-01	k: 671492	n:800000
KS ci ratio: 1.617362e-01	ci left: 6.744047e-04	ci right 7.942581e-04	k: 586	n:800000
EFEMP2   800000 perm   441 sec   (1813 perm/sec)   p_kst 7.325000e-04   p_cons 8.393650e-01   p_joint 1.252500e-03

Joint ci ratio: 1.228436e-01	ci left: 1.178413e-03	ci right 1.333831e-03	k: 1016	n:810000
Cons ci ratio: 1.905600e-03	ci left: 8.385367e-01	ci right 8.401374e-01	k: 679864	n:810000
KS ci ratio: 1.605103e-01	ci left: 6.767419e-04	ci right 7.960111e-04	k: 595	n:810000
EFEMP2   810000 perm   450 sec   (1799 perm/sec)   p_kst 7.345679e-04   p_cons 8.393383e-01   p_joint 1.254321e-03

Joint ci ratio: 1.223636e-01	ci left: 1.173499e-03	ci right 1.327620e-03	k: 1024	n:820000
Cons ci ratio: 1.894060e-03	ci left: 8.385253e-01	ci right 8.401162e-01	k: 688244	n:820000
KS ci ratio: 1.598414e-01	ci left: 6.743420e-04	ci right 7.926455e-04	k: 600	n:820000
EFEMP2   820000 perm   459 sec   (1785 perm/sec)   p_kst 7.317073e-04   p_cons 8.393220e-01   p_joint 1.248780e-03

Joint ci ratio: 1.214778e-01	ci left: 1.176882e-03	ci right 1.330247e-03	k: 1039	n:830000
Cons ci ratio: 1.882491e-03	ci left: 8.385480e-01	ci right 8.401292e-01	k: 696652	n:830000
KS ci ratio: 1.586577e-01	ci left: 6.766288e-04	ci right 7.943706e-04	k: 609	n:830000
EFEMP2   830000 perm   469 sec   (1771 perm/sec)   p_kst 7.337349e-04   p_cons 8.393398e-01   p_joint 1.251807e-03

Joint ci ratio: 1.205537e-01	ci left: 1.181343e-03	ci right 1.334035e-03	k: 1055	n:840000
Cons ci ratio: 1.871230e-03	ci left: 8.385558e-01	ci right 8.401276e-01	k: 705048	n:840000
KS ci ratio: 1.577552e-01	ci left: 6.765771e-04	ci right 7.935768e-04	k: 616	n:840000
EFEMP2   840000 perm   478 sec   (1758 perm/sec)   p_kst 7.333333e-04   p_cons 8.393429e-01   p_joint 1.255952e-03

Joint ci ratio: 1.195946e-01	ci left: 1.186844e-03	ci right 1.338941e-03	k: 1072	n:850000
Cons ci ratio: 1.860227e-03	ci left: 8.385552e-01	ci right 8.401177e-01	k: 713437	n:850000
KS ci ratio: 1.568679e-01	ci left: 6.765285e-04	ci right 7.927998e-04	k: 623	n:850000
EFEMP2   850000 perm   487 sec   (1744 perm/sec)   p_kst 7.329412e-04   p_cons 8.393376e-01   p_joint 1.261176e-03

Joint ci ratio: 1.189864e-01	ci left: 1.185452e-03	ci right 1.336544e-03	k: 1083	n:860000
Cons ci ratio: 1.849303e-03	ci left: 8.385710e-01	ci right 8.401244e-01	k: 721840	n:860000
KS ci ratio: 1.558718e-01	ci left: 6.776002e-04	ci right 7.932472e-04	k: 631	n:860000
EFEMP2   860000 perm   497 sec   (1731 perm/sec)   p_kst 7.337209e-04   p_cons 8.393488e-01   p_joint 1.259302e-03

Joint ci ratio: 1.182792e-01	ci left: 1.186326e-03	ci right 1.336567e-03	k: 1096	n:870000
Cons ci ratio: 1.838844e-03	ci left: 8.385462e-01	ci right 8.400907e-01	k: 730208	n:870000
KS ci ratio: 1.547736e-01	ci left: 6.797545e-04	ci right 7.948760e-04	k: 640	n:870000
EFEMP2   870000 perm   506 sec   (1718 perm/sec)   p_kst 7.356322e-04   p_cons 8.393195e-01   p_joint 1.259770e-03

Joint ci ratio: 1.175845e-01	ci left: 1.187182e-03	ci right 1.336587e-03	k: 1109	n:880000
Cons ci ratio: 1.828568e-03	ci left: 8.385208e-01	ci right 8.400566e-01	k: 738575	n:880000
KS ci ratio: 1.542932e-01	ci left: 6.763996e-04	ci right 7.905645e-04	k: 644	n:880000
EFEMP2   880000 perm   516 sec   (1705 perm/sec)   p_kst 7.318182e-04   p_cons 8.392898e-01   p_joint 1.260227e-03

Joint ci ratio: 1.164873e-01	ci left: 1.196748e-03	ci right 1.345855e-03	k: 1130	n:890000
Cons ci ratio: 1.818765e-03	ci left: 8.384509e-01	ci right 8.399783e-01	k: 746902	n:890000
KS ci ratio: 1.521834e-01	ci left: 6.882492e-04	ci right 8.026809e-04	k: 662	n:890000
EFEMP2   890000 perm   526 sec   (1692 perm/sec)   p_kst 7.438202e-04   p_cons 8.392157e-01   p_joint 1.269663e-03

Joint ci ratio: 1.158235e-01	ci left: 1.197475e-03	ci right 1.345765e-03	k: 1143	n:900000
Cons ci ratio: 1.809021e-03	ci left: 8.383971e-01	ci right 8.399163e-01	k: 755242	n:900000
KS ci ratio: 1.513863e-01	ci left: 6.880844e-04	ci right 8.018352e-04	k: 669	n:900000
EFEMP2   900000 perm   536 sec   (1680 perm/sec)   p_kst 7.433333e-04   p_cons 8.391578e-01   p_joint 1.270000e-03

Joint ci ratio: 1.151709e-01	ci left: 1.198189e-03	ci right 1.345674e-03	k: 1156	n:910000
Cons ci ratio: 1.799263e-03	ci left: 8.383699e-01	ci right 8.398807e-01	k: 763605	n:910000
KS ci ratio: 1.504905e-01	ci left: 6.889822e-04	ci right 8.021468e-04	k: 677	n:910000
EFEMP2   910000 perm   546 sec   (1668 perm/sec)   p_kst 7.439560e-04   p_cons 8.391264e-01   p_joint 1.270330e-03

Joint ci ratio: 1.019516e-01	ci left: 1.522536e-03	ci right 1.687149e-03	k: 1475	n:920000
Cons ci ratio: 1.788998e-03	ci left: 8.384434e-01	ci right 8.399458e-01	k: 772060	n:920000
KS ci ratio: 1.495014e-01	ci left: 6.909088e-04	ci right 8.035772e-04	k: 686	n:920000
EFEMP2   920000 perm   556 sec   (1656 perm/sec)   p_kst 7.456522e-04   p_cons 8.391957e-01   p_joint 1.603261e-03

Joint ci ratio: 1.015399e-01	ci left: 1.518740e-03	ci right 1.682239e-03	k: 1487	n:930000
Cons ci ratio: 1.779609e-03	ci left: 8.384087e-01	ci right 8.399031e-01	k: 780416	n:930000
KS ci ratio: 1.491764e-01	ci left: 6.865848e-04	ci right 7.982830e-04	k: 689	n:930000
EFEMP2   930000 perm   566 sec   (1644 perm/sec)   p_kst 7.408602e-04   p_cons 8.391570e-01   p_joint 1.598925e-03

Joint ci ratio: 1.011669e-01	ci left: 1.513988e-03	ci right 1.676342e-03	k: 1498	n:940000
Cons ci ratio: 1.769759e-03	ci left: 8.384675e-01	ci right 8.399538e-01	k: 788859	n:940000
KS ci ratio: 1.485321e-01	ci left: 6.854259e-04	ci right 7.964112e-04	k: 695	n:940000
EFEMP2   940000 perm   576 sec   (1632 perm/sec)   p_kst 7.393617e-04   p_cons 8.392117e-01   p_joint 1.593617e-03

Joint ci ratio: 1.007646e-01	ci left: 1.510364e-03	ci right 1.671647e-03	k: 1510	n:950000
Cons ci ratio: 1.761141e-03	ci left: 8.383606e-01	ci right 8.398394e-01	k: 797146	n:950000
KS ci ratio: 1.481074e-01	ci left: 6.822651e-04	ci right 7.923948e-04	k: 699	n:950000
EFEMP2   950000 perm   586 sec   (1621 perm/sec)   p_kst 7.357895e-04   p_cons 8.391011e-01   p_joint 1.589474e-03

Joint ci ratio: 1.003011e-01	ci left: 1.508848e-03	ci right 1.669184e-03	k: 1524	n:960000
Cons ci ratio: 1.751722e-03	ci left: 8.383989e-01	ci right 8.398699e-01	k: 805570	n:960000
KS ci ratio: 1.470605e-01	ci left: 6.851903e-04	ci right 7.949416e-04	k: 709	n:960000
EFEMP2   960000 perm   596 sec   (1610 perm/sec)   p_kst 7.385417e-04   p_cons 8.391354e-01   p_joint 1.587500e-03

Joint ci ratio: 9.974662e-02	ci left: 1.510380e-03	ci right 1.669939e-03	k: 1541	n:970000
Cons ci ratio: 1.742924e-03	ci left: 8.383631e-01	ci right 8.398266e-01	k: 813923	n:970000
KS ci ratio: 1.463409e-01	ci left: 6.850781e-04	ci right 7.942275e-04	k: 716	n:970000
EFEMP2   970000 perm   607 sec   (1598 perm/sec)   p_kst 7.381443e-04   p_cons 8.390959e-01   p_joint 1.588660e-03

Joint ci ratio: 9.929697e-02	ci left: 1.508898e-03	ci right 1.667541e-03	k: 1555	n:980000
Cons ci ratio: 1.733917e-03	ci left: 8.383812e-01	ci right 8.398372e-01	k: 822328	n:980000
KS ci ratio: 1.455312e-01	ci left: 6.859527e-04	ci right 7.945843e-04	k: 724	n:980000
EFEMP2   980000 perm   617 sec   (1587 perm/sec)   p_kst 7.387755e-04   p_cons 8.391102e-01   p_joint 1.586735e-03

Joint ci ratio: 9.882183e-02	ci left: 1.508433e-03	ci right 1.666223e-03	k: 1570	n:990000
Cons ci ratio: 1.724970e-03	ci left: 8.384111e-01	ci right 8.398596e-01	k: 830745	n:990000
KS ci ratio: 1.453313e-01	ci left: 6.809704e-04	ci right 7.886520e-04	k: 726	n:990000
EFEMP2   990000 perm   628 sec   (1576 perm/sec)   p_kst 7.333333e-04   p_cons 8.391364e-01   p_joint 1.585859e-03

Joint ci ratio: 9.832241e-02	ci left: 1.508954e-03	ci right 1.665956e-03	k: 1586	n:1000000
Cons ci ratio: 1.716688e-03	ci left: 8.383573e-01	ci right 8.397987e-01	k: 839079	n:1000000
KS ci ratio: 1.447354e-01	ci left: 6.799430e-04	ci right 7.869831e-04	k: 732	n:1000000
EFEMP2   1000000 perm   639 sec   (1565 perm/sec)   p_kst 7.320000e-04   p_cons 8.390790e-01   p_joint 1.586000e-03

Joint ci ratio: 9.920358e-02	ci left: 1.466974e-03	ci right 1.621055e-03	k: 1558	n:1010000
Cons ci ratio: 1.707704e-03	ci left: 8.384345e-01	ci right 8.398685e-01	k: 847544	n:1010000
KS ci ratio: 1.441467e-01	ci left: 6.789368e-04	ci right 7.853463e-04	k: 738	n:1010000
EFEMP2   1010000 perm   650 sec   (1555 perm/sec)   p_kst 7.306931e-04   p_cons 8.391525e-01   p_joint 1.542574e-03

Joint ci ratio: 9.854184e-02	ci left: 1.472672e-03	ci right 1.626260e-03	k: 1579	n:1020000
Cons ci ratio: 1.699988e-03	ci left: 8.383305e-01	ci right 8.397578e-01	k: 855826	n:1020000
KS ci ratio: 1.431810e-01	ci left: 6.817321e-04	ci right 7.878029e-04	k: 748	n:1020000
EFEMP2   1020000 perm   661 sec   (1544 perm/sec)   p_kst 7.333333e-04   p_cons 8.390451e-01   p_joint 1.548039e-03

Joint ci ratio: 9.807741e-02	ci left: 1.472579e-03	ci right 1.625392e-03	k: 1594	n:1030000
Cons ci ratio: 1.691518e-03	ci left: 8.383656e-01	ci right 8.397859e-01	k: 864249	n:1030000
KS ci ratio: 1.428954e-01	ci left: 6.779216e-04	ci right 7.831712e-04	k: 751	n:1030000
EFEMP2   1030000 perm   672 sec   (1534 perm/sec)   p_kst 7.291262e-04   p_cons 8.390767e-01   p_joint 1.547573e-03

Joint ci ratio: 9.737747e-02	ci left: 1.479995e-03	ci right 1.632418e-03	k: 1617	n:1040000
Cons ci ratio: 1.683172e-03	ci left: 8.384001e-01	ci right 8.398134e-01	k: 872672	n:1040000
KS ci ratio: 1.420478e-01	ci left: 6.797486e-04	ci right 7.846028e-04	k: 760	n:1040000
EFEMP2   1040000 perm   683 sec   (1523 perm/sec)   p_kst 7.307692e-04   p_cons 8.391077e-01   p_joint 1.554808e-03

Joint ci ratio: 9.684019e-02	ci left: 1.482626e-03	ci right 1.634431e-03	k: 1635	n:1050000
Cons ci ratio: 1.675239e-03	ci left: 8.383872e-01	ci right 8.397938e-01	k: 881046	n:1050000
KS ci ratio: 1.410319e-01	ci left: 6.833801e-04	ci right 7.879772e-04	k: 771	n:1050000
EFEMP2   1050000 perm   694 sec   (1513 perm/sec)   p_kst 7.342857e-04   p_cons 8.390914e-01   p_joint 1.557143e-03

Joint ci ratio: 9.631169e-02	ci left: 1.485210e-03	ci right 1.636402e-03	k: 1653	n:1060000
Cons ci ratio: 1.667195e-03	ci left: 8.384105e-01	ci right 8.398103e-01	k: 889458	n:1060000
KS ci ratio: 1.403068e-01	ci left: 6.842147e-04	ci right 7.883560e-04	k: 779	n:1060000
EFEMP2   1060000 perm   705 sec   (1504 perm/sec)   p_kst 7.349057e-04   p_cons 8.391113e-01   p_joint 1.559434e-03

Joint ci ratio: 9.562008e-02	ci left: 1.493221e-03	ci right 1.644077e-03	k: 1677	n:1070000
Cons ci ratio: 1.659042e-03	ci left: 8.384698e-01	ci right 8.398629e-01	k: 897909	n:1070000
KS ci ratio: 1.394158e-01	ci left: 6.868390e-04	ci right 7.906607e-04	k: 789	n:1070000
EFEMP2   1070000 perm   716 sec   (1494 perm/sec)   p_kst 7.373832e-04   p_cons 8.391673e-01   p_joint 1.567290e-03

Joint ci ratio: 9.528015e-02	ci left: 1.490241e-03	ci right 1.640230e-03	k: 1689	n:1080000
Cons ci ratio: 1.651336e-03	ci left: 8.384743e-01	ci right 8.398609e-01	k: 906302	n:1080000
KS ci ratio: 1.389768e-01	ci left: 6.849477e-04	ci right 7.881306e-04	k: 794	n:1080000
EFEMP2   1080000 perm   728 sec   (1484 perm/sec)   p_kst 7.351852e-04   p_cons 8.391685e-01   p_joint 1.563889e-03

Joint ci ratio: 9.474888e-02	ci left: 1.493586e-03	ci right 1.643027e-03	k: 1708	n:1090000
Cons ci ratio: 1.644234e-03	ci left: 8.383969e-01	ci right 8.397774e-01	k: 914606	n:1090000
KS ci ratio: 1.381108e-01	ci left: 6.875202e-04	ci right 7.903921e-04	k: 804	n:1090000
EFEMP2   1090000 perm   739 sec   (1475 perm/sec)   p_kst 7.376147e-04   p_cons 8.390881e-01   p_joint 1.566972e-03

Joint ci ratio: 9.417184e-02	ci left: 1.498648e-03	ci right 1.647632e-03	k: 1729	n:1100000
Cons ci ratio: 1.636560e-03	ci left: 8.384302e-01	ci right 8.398044e-01	k: 923030	n:1100000
KS ci ratio: 1.371765e-01	ci left: 6.909257e-04	ci right 7.935508e-04	k: 815	n:1100000
EFEMP2   1100000 perm   751 sec   (1465 perm/sec)   p_kst 7.409091e-04   p_cons 8.391182e-01   p_joint 1.571818e-03

Joint ci ratio: 9.390108e-02	ci left: 1.493944e-03	ci right 1.642010e-03	k: 1739	n:1110000
Cons ci ratio: 1.629260e-03	ci left: 8.384187e-01	ci right 8.397867e-01	k: 931405	n:1110000
KS ci ratio: 1.370090e-01	ci left: 6.864411e-04	ci right 7.882653e-04	k: 817	n:1110000
EFEMP2   1110000 perm   762 sec   (1456 perm/sec)   p_kst 7.360360e-04   p_cons 8.391036e-01   p_joint 1.566667e-03

Joint ci ratio: 9.461236e-02	ci left: 1.457937e-03	ci right 1.603589e-03	k: 1713	n:1120000
Cons ci ratio: 1.622179e-03	ci left: 8.383869e-01	ci right 8.397489e-01	k: 939757	n:1120000
KS ci ratio: 1.368422e-01	ci left: 6.820366e-04	ci right 7.830742e-04	k: 819	n:1120000
EFEMP2   1120000 perm   774 sec   (1447 perm/sec)   p_kst 7.312500e-04   p_cons 8.390688e-01   p_joint 1.529464e-03

Joint ci ratio: 9.431040e-02	ci left: 1.454539e-03	ci right 1.599363e-03	k: 1724	n:1130000
Cons ci ratio: 1.615376e-03	ci left: 8.383246e-01	ci right 8.396808e-01	k: 948074	n:1130000
KS ci ratio: 1.366759e-01	ci left: 6.777101e-04	ci right 7.779749e-04	k: 821	n:1130000
EFEMP2   1130000 perm   786 sec   (1438 perm/sec)   p_kst 7.265487e-04   p_cons 8.390035e-01   p_joint 1.525664e-03

Joint ci ratio: 9.382205e-02	ci left: 1.457198e-03	ci right 1.601494e-03	k: 1742	n:1140000
Cons ci ratio: 1.608139e-03	ci left: 8.383504e-01	ci right 8.397005e-01	k: 956490	n:1140000
KS ci ratio: 1.360977e-01	ci left: 6.776961e-04	ci right 7.775003e-04	k: 828	n:1140000
EFEMP2   1140000 perm   798 sec   (1429 perm/sec)   p_kst 7.263158e-04   p_cons 8.390263e-01   p_joint 1.528070e-03

Joint ci ratio: 9.347421e-02	ci left: 1.455566e-03	ci right 1.599137e-03	k: 1755	n:1150000
Cons ci ratio: 1.601144e-03	ci left: 8.383514e-01	ci right 8.396956e-01	k: 964878	n:1150000
KS ci ratio: 1.356892e-01	ci left: 6.760031e-04	ci right 7.752351e-04	k: 833	n:1150000
EFEMP2   1150000 perm   810 sec   (1419 perm/sec)   p_kst 7.243478e-04   p_cons 8.390243e-01   p_joint 1.526087e-03

Joint ci ratio: 9.310385e-02	ci left: 1.454806e-03	ci right 1.597702e-03	k: 1769	n:1160000
Cons ci ratio: 1.594142e-03	ci left: 8.383688e-01	ci right 8.397071e-01	k: 973285	n:1160000
KS ci ratio: 1.354461e-01	ci left: 6.726739e-04	ci right 7.712260e-04	k: 836	n:1160000
EFEMP2   1160000 perm   822 sec   (1411 perm/sec)   p_kst 7.206897e-04   p_cons 8.390388e-01   p_joint 1.525000e-03

Joint ci ratio: 9.263392e-02	ci left: 1.457399e-03	ci right 1.599788e-03	k: 1787	n:1170000
Cons ci ratio: 1.587488e-03	ci left: 8.383422e-01	ci right 8.396749e-01	k: 981641	n:1170000
KS ci ratio: 1.344852e-01	ci left: 6.768347e-04	ci right 7.752367e-04	k: 848	n:1170000
EFEMP2   1170000 perm   834 sec   (1402 perm/sec)   p_kst 7.247863e-04   p_cons 8.390094e-01   p_joint 1.527350e-03

Joint ci ratio: 9.227342e-02	ci left: 1.456638e-03	ci right 1.598369e-03	k: 1801	n:1180000
Cons ci ratio: 1.580936e-03	ci left: 8.383127e-01	ci right 8.396399e-01	k: 989993	n:1180000
KS ci ratio: 1.338560e-01	ci left: 6.776509e-04	ci right 7.756740e-04	k: 856	n:1180000
EFEMP2   1180000 perm   847 sec   (1394 perm/sec)   p_kst 7.254237e-04   p_cons 8.389771e-01   p_joint 1.526271e-03

Joint ci ratio: 9.623256e-02	ci left: 1.325415e-03	ci right 1.460224e-03	k: 1656	n:1190000
Cons ci ratio: 1.574410e-03	ci left: 8.382930e-01	ci right 8.396146e-01	k: 998356	n:1190000
KS ci ratio: 1.335448e-01	ci left: 6.752053e-04	ci right 7.726295e-04	k: 860	n:1190000
EFEMP2   1190000 perm   859 sec   (1385 perm/sec)   p_kst 7.226891e-04   p_cons 8.389546e-01   p_joint 1.391597e-03

Joint ci ratio: 9.574256e-02	ci left: 1.328197e-03	ci right 1.462562e-03	k: 1673	n:1200000
Cons ci ratio: 1.567815e-03	ci left: 8.382994e-01	ci right 8.396156e-01	k: 1006750	n:1200000
KS ci ratio: 1.327759e-01	ci left: 6.776343e-04	ci right 7.748016e-04	k: 870	n:1200000
EFEMP2   1200000 perm   872 sec   (1377 perm/sec)   p_kst 7.250000e-04   p_cons 8.389583e-01   p_joint 1.394167e-03

Joint ci ratio: 9.525996e-02	ci left: 1.330934e-03	ci right 1.464859e-03	k: 1690	n:1210000
Cons ci ratio: 1.561249e-03	ci left: 8.383149e-01	ci right 8.396256e-01	k: 1015155	n:1210000
KS ci ratio: 1.317956e-01	ci left: 6.824224e-04	ci right 7.794973e-04	k: 883	n:1210000
EFEMP2   1210000 perm   884 sec   (1368 perm/sec)   p_kst 7.297521e-04   p_cons 8.389711e-01   p_joint 1.396694e-03

Joint ci ratio: 9.478459e-02	ci left: 1.333628e-03	ci right 1.467118e-03	k: 1707	n:1220000
Cons ci ratio: 1.554605e-03	ci left: 8.383581e-01	ci right 8.396632e-01	k: 1023594	n:1220000
KS ci ratio: 1.312033e-01	ci left: 6.831705e-04	ci right 7.798809e-04	k: 891	n:1220000
EFEMP2   1220000 perm   897 sec   (1360 perm/sec)   p_kst 7.303279e-04   p_cons 8.390115e-01   p_joint 1.399180e-03

Joint ci ratio: 9.426156e-02	ci left: 1.337868e-03	ci right 1.471002e-03	k: 1726	n:1230000
Cons ci ratio: 1.548464e-03	ci left: 8.383273e-01	ci right 8.396272e-01	k: 1031943	n:1230000
KS ci ratio: 1.304738e-01	ci left: 6.854803e-04	ci right 7.819364e-04	k: 901	n:1230000
EFEMP2   1230000 perm   910 sec   (1352 perm/sec)   p_kst 7.325203e-04   p_cons 8.389780e-01   p_joint 1.403252e-03

Joint ci ratio: 9.396291e-02	ci left: 1.335741e-03	ci right 1.468219e-03	k: 1737	n:1240000
Cons ci ratio: 1.542625e-03	ci left: 8.382566e-01	ci right 8.395515e-01	k: 1040242	n:1240000
KS ci ratio: 1.301138e-01	ci left: 6.838530e-04	ci right 7.797941e-04	k: 906	n:1240000
EFEMP2   1240000 perm   922 sec   (1344 perm/sec)   p_kst 7.306452e-04   p_cons 8.389048e-01   p_joint 1.400806e-03

Joint ci ratio: 9.356000e-02	ci left: 1.336773e-03	ci right 1.468754e-03	k: 1752	n:1250000
Cons ci ratio: 1.536602e-03	ci left: 8.382311e-01	ci right 8.395209e-01	k: 1048596	n:1250000
KS ci ratio: 1.295437e-01	ci left: 6.845743e-04	ci right 7.801635e-04	k: 914	n:1250000
EFEMP2   1250000 perm   935 sec   (1337 perm/sec)   p_kst 7.312000e-04   p_cons 8.388768e-01   p_joint 1.401600e-03

Joint ci ratio: 9.318862e-02	ci left: 1.337016e-03	ci right 1.468468e-03	k: 1766	n:1260000
Cons ci ratio: 1.530581e-03	ci left: 8.382180e-01	ci right 8.395027e-01	k: 1056965	n:1260000
KS ci ratio: 1.291913e-01	ci left: 6.829810e-04	ci right 7.780684e-04	k: 919	n:1260000
EFEMP2   1260000 perm   948 sec   (1329 perm/sec)   p_kst 7.293651e-04   p_cons 8.388611e-01   p_joint 1.401587e-03

Joint ci ratio: 9.263950e-02	ci left: 1.342639e-03	ci right 1.473824e-03	k: 1787	n:1270000
Cons ci ratio: 1.524799e-03	ci left: 8.381751e-01	ci right 8.394549e-01	k: 1065296	n:1270000
KS ci ratio: 1.284947e-01	ci left: 6.852235e-04	ci right 7.800695e-04	k: 929	n:1270000
EFEMP2   1270000 perm   961 sec   (1321 perm/sec)   p_kst 7.314961e-04   p_cons 8.388157e-01   p_joint 1.407087e-03

Joint ci ratio: 9.215100e-02	ci left: 1.346651e-03	ci right 1.477497e-03	k: 1806	n:1280000
Cons ci ratio: 1.518735e-03	ci left: 8.381947e-01	ci right 8.394694e-01	k: 1073706	n:1280000
KS ci ratio: 1.279456e-01	ci left: 6.859197e-04	ci right 7.804255e-04	k: 937	n:1280000
EFEMP2   1280000 perm   975 sec   (1313 perm/sec)   p_kst 7.320313e-04   p_cons 8.388328e-01   p_joint 1.410938e-03

Joint ci ratio: 9.169529e-02	ci left: 1.349845e-03	ci right 1.480317e-03	k: 1824	n:1290000
Cons ci ratio: 1.512934e-03	ci left: 8.381798e-01	ci right 8.394497e-01	k: 1082072	n:1290000
KS ci ratio: 1.273361e-01	ci left: 6.873565e-04	ci right 7.815751e-04	k: 946	n:1290000
EFEMP2   1290000 perm   988 sec   (1306 perm/sec)   p_kst 7.333333e-04   p_cons 8.388155e-01   p_joint 1.413953e-03

Joint ci ratio: 9.104860e-02	ci left: 1.359005e-03	ci right 1.489387e-03	k: 1850	n:1300000
Cons ci ratio: 1.507100e-03	ci left: 8.381829e-01	ci right 8.394479e-01	k: 1090461	n:1300000
KS ci ratio: 1.266689e-01	ci left: 6.895171e-04	ci right 7.834995e-04	k: 956	n:1300000
EFEMP2   1300000 perm   1001 sec   (1298 perm/sec)   p_kst 7.353846e-04   p_cons 8.388162e-01   p_joint 1.423077e-03

Joint ci ratio: 9.082824e-02	ci left: 1.355344e-03	ci right 1.485044e-03	k: 1859	n:1310000
Cons ci ratio: 1.501231e-03	ci left: 8.382044e-01	ci right 8.394644e-01	k: 1098874	n:1310000
KS ci ratio: 1.262737e-01	ci left: 6.886889e-04	ci right 7.822436e-04	k: 962	n:1310000
EFEMP2   1310000 perm   1015 sec   (1291 perm/sec)   p_kst 7.343511e-04   p_cons 8.388351e-01   p_joint 1.419084e-03

Joint ci ratio: 9.041589e-02	ci left: 1.357664e-03	ci right 1.486964e-03	k: 1876	n:1320000
Cons ci ratio: 1.495469e-03	ci left: 8.382186e-01	ci right 8.394738e-01	k: 1107278	n:1320000
KS ci ratio: 1.258173e-01	ci left: 6.886073e-04	ci right 7.817876e-04	k: 969	n:1320000
EFEMP2   1320000 perm   1028 sec   (1284 perm/sec)   p_kst 7.340909e-04   p_cons 8.388470e-01   p_joint 1.421212e-03

Joint ci ratio: 9.010444e-02	ci left: 1.357009e-03	ci right 1.485779e-03	k: 1889	n:1330000
Cons ci ratio: 1.489767e-03	ci left: 8.382334e-01	ci right 8.394839e-01	k: 1115683	n:1330000
KS ci ratio: 1.253016e-01	ci left: 6.892560e-04	ci right 7.821134e-04	k: 977	n:1330000
EFEMP2   1330000 perm   1042 sec   (1277 perm/sec)   p_kst 7.345865e-04   p_cons 8.388594e-01   p_joint 1.420301e-03

Joint ci ratio: 9.815665e-02	ci left: 1.130442e-03	ci right 1.247850e-03	k: 1592	n:1340000
Cons ci ratio: 1.484029e-03	ci left: 8.382667e-01	ci right 8.395124e-01	k: 1124113	n:1340000
KS ci ratio: 1.248556e-01	ci left: 6.891727e-04	ci right 7.816640e-04	k: 984	n:1340000
EFEMP2   1340000 perm   1055 sec   (1270 perm/sec)   p_kst 7.343284e-04   p_cons 8.388903e-01   p_joint 1.188060e-03

Joint ci ratio: 8.557692e-02	ci left: 1.485428e-03	ci right 1.618947e-03	k: 2094	n:1350000
Cons ci ratio: 1.478639e-03	ci left: 8.382476e-01	ci right 8.394887e-01	k: 1132473	n:1350000
KS ci ratio: 1.243516e-01	ci left: 6.898089e-04	ci right 7.819844e-04	k: 992	n:1350000
EFEMP2   1350000 perm   1069 sec   (1263 perm/sec)   p_kst 7.348148e-04   p_cons 8.388689e-01   p_joint 1.551111e-03

Joint ci ratio: 8.515104e-02	ci left: 1.489617e-03	ci right 1.622814e-03	k: 2115	n:1360000
Cons ci ratio: 1.473051e-03	ci left: 8.382759e-01	ci right 8.395124e-01	k: 1140897	n:1360000
KS ci ratio: 1.235453e-01	ci left: 6.939994e-04	ci right 7.860894e-04	k: 1005	n:1360000
EFEMP2   1360000 perm   1083 sec   (1256 perm/sec)   p_kst 7.389706e-04   p_cons 8.388949e-01   p_joint 1.555147e-03

Joint ci ratio: 8.489075e-02	ci left: 1.488031e-03	ci right 1.620659e-03	k: 2128	n:1370000
Cons ci ratio: 1.467697e-03	ci left: 8.382724e-01	ci right 8.395043e-01	k: 1149278	n:1370000
KS ci ratio: 1.231177e-01	ci left: 6.938855e-04	ci right 7.856186e-04	k: 1012	n:1370000
EFEMP2   1370000 perm   1097 sec   (1249 perm/sec)   p_kst 7.386861e-04   p_cons 8.388891e-01   p_joint 1.553285e-03

Joint ci ratio: 8.455380e-02	ci left: 1.489306e-03	ci right 1.621495e-03	k: 2145	n:1380000
Cons ci ratio: 1.462263e-03	ci left: 8.382943e-01	ci right 8.395217e-01	k: 1157694	n:1380000
KS ci ratio: 1.225144e-01	ci left: 6.958812e-04	ci right 7.873945e-04	k: 1022	n:1380000
EFEMP2   1380000 perm   1111 sec   (1242 perm/sec)   p_kst 7.405797e-04   p_cons 8.389087e-01   p_joint 1.554348e-03

Joint ci ratio: 8.427938e-02	ci left: 1.488451e-03	ci right 1.620114e-03	k: 2159	n:1390000
Cons ci ratio: 1.457165e-03	ci left: 8.382647e-01	ci right 8.394878e-01	k: 1166039	n:1390000
KS ci ratio: 1.221567e-01	ci left: 6.950593e-04	ci right 7.861784e-04	k: 1028	n:1390000
EFEMP2   1390000 perm   1125 sec   (1236 perm/sec)   p_kst 7.395683e-04   p_cons 8.388770e-01   p_joint 1.553237e-03

Joint ci ratio: 8.387249e-02	ci left: 1.492504e-03	ci right 1.623857e-03	k: 2180	n:1400000
Cons ci ratio: 1.451874e-03	ci left: 8.382814e-01	ci right 8.395001e-01	k: 1174448	n:1400000
KS ci ratio: 1.216846e-01	ci left: 6.956346e-04	ci right 7.864513e-04	k: 1036	n:1400000
EFEMP2   1400000 perm   1139 sec   (1229 perm/sec)   p_kst 7.400000e-04   p_cons 8.388914e-01   p_joint 1.557143e-03

Joint ci ratio: 8.358557e-02	ci left: 1.492335e-03	ci right 1.623202e-03	k: 2195	n:1410000
Cons ci ratio: 1.446712e-03	ci left: 8.382843e-01	ci right 8.394987e-01	k: 1182838	n:1410000
KS ci ratio: 1.212179e-01	ci left: 6.962024e-04	ci right 7.867197e-04	k: 1044	n:1410000
EFEMP2   1410000 perm   1153 sec   (1223 perm/sec)   p_kst 7.404255e-04   p_cons 8.388922e-01   p_joint 1.556738e-03

Joint ci ratio: 8.335823e-02	ci left: 1.490100e-03	ci right 1.620398e-03	k: 2207	n:1420000
Cons ci ratio: 1.441706e-03	ci left: 8.382682e-01	ci right 8.394783e-01	k: 1191201	n:1420000
KS ci ratio: 1.208140e-01	ci left: 6.960799e-04	ci right 7.862582e-04	k: 1051	n:1420000
EFEMP2   1420000 perm   1167 sec   (1217 perm/sec)   p_kst 7.401408e-04   p_cons 8.388739e-01   p_joint 1.554225e-03

Joint ci ratio: 8.309525e-02	ci left: 1.489266e-03	ci right 1.619060e-03	k: 2221	n:1430000
Cons ci ratio: 1.436548e-03	ci left: 8.382908e-01	ci right 8.394966e-01	k: 1199619	n:1430000
KS ci ratio: 1.203572e-01	ci left: 6.966379e-04	ci right 7.865229e-04	k: 1059	n:1430000
EFEMP2   1430000 perm   1181 sec   (1210 perm/sec)   p_kst 7.405594e-04   p_cons 8.388944e-01   p_joint 1.553147e-03

Joint ci ratio: 8.547899e-02	ci left: 1.395984e-03	ci right 1.521313e-03	k: 2099	n:1440000
Cons ci ratio: 1.431613e-03	ci left: 8.382811e-01	ci right 8.394828e-01	k: 1207991	n:1440000
KS ci ratio: 1.201309e-01	ci left: 6.944943e-04	ci right 7.839223e-04	k: 1063	n:1440000
EFEMP2   1440000 perm   1196 sec   (1204 perm/sec)   p_kst 7.381944e-04   p_cons 8.388826e-01   p_joint 1.457639e-03

Joint ci ratio: 8.529657e-02	ci left: 1.392431e-03	ci right 1.517160e-03	k: 2108	n:1450000
Cons ci ratio: 1.426474e-03	ci left: 8.383200e-01	ci right 8.395173e-01	k: 1216433	n:1450000
KS ci ratio: 1.199058e-01	ci left: 6.923805e-04	ci right 7.813574e-04	k: 1067	n:1450000
EFEMP2   1450000 perm   1211 sec   (1198 perm/sec)   p_kst 7.358621e-04   p_cons 8.389193e-01   p_joint 1.453793e-03

Joint ci ratio: 9.267395e-02	ci left: 1.167238e-03	ci right 1.281330e-03	k: 1786	n:1460000
Cons ci ratio: 1.421686e-03	ci left: 8.383020e-01	ci right 8.394953e-01	k: 1224793	n:1460000
KS ci ratio: 1.197939e-01	ci left: 6.889669e-04	ci right 7.774166e-04	k: 1069	n:1460000
EFEMP2   1460000 perm   1225 sec   (1192 perm/sec)   p_kst 7.321918e-04   p_cons 8.388993e-01   p_joint 1.223288e-03

Joint ci ratio: 9.226172e-02	ci left: 1.169931e-03	ci right 1.283750e-03	k: 1802	n:1470000
Cons ci ratio: 1.416867e-03	ci left: 8.382993e-01	ci right 8.394885e-01	k: 1233175	n:1470000
KS ci ratio: 1.192932e-01	ci left: 6.902194e-04	ci right 7.784335e-04	k: 1078	n:1470000
EFEMP2   1470000 perm   1240 sec   (1186 perm/sec)   p_kst 7.333333e-04   p_cons 8.388946e-01   p_joint 1.225850e-03

Joint ci ratio: 9.203241e-02	ci left: 1.167967e-03	ci right 1.281297e-03	k: 1811	n:1480000
Cons ci ratio: 1.411963e-03	ci left: 8.383223e-01	ci right 8.395075e-01	k: 1241595	n:1480000
KS ci ratio: 1.189630e-01	ci left: 6.894890e-04	ci right 7.773486e-04	k: 1084	n:1480000
EFEMP2   1480000 perm   1255 sec   (1180 perm/sec)   p_kst 7.324324e-04   p_cons 8.389155e-01   p_joint 1.223649e-03

Joint ci ratio: 9.165375e-02	ci left: 1.169964e-03	ci right 1.282996e-03	k: 1826	n:1490000
Cons ci ratio: 1.407067e-03	ci left: 8.383531e-01	ci right 8.395342e-01	k: 1250027	n:1490000
KS ci ratio: 1.183643e-01	ci left: 6.920250e-04	ci right 7.797330e-04	k: 1095	n:1490000
EFEMP2   1490000 perm   1270 sec   (1173 perm/sec)   p_kst 7.348993e-04   p_cons 8.389443e-01   p_joint 1.225503e-03

Joint ci ratio: 9.127972e-02	ci left: 1.171936e-03	ci right 1.284671e-03	k: 1841	n:1500000
Cons ci ratio: 1.402457e-03	ci left: 8.383381e-01	ci right 8.395153e-01	k: 1258391	n:1500000
KS ci ratio: 1.178813e-01	ci left: 6.932343e-04	ci right 7.807120e-04	k: 1104	n:1500000
EFEMP2   1500000 perm   1285 sec   (1167 perm/sec)   p_kst 7.360000e-04   p_cons 8.389273e-01   p_joint 1.227333e-03

Joint ci ratio: 8.360895e-02	ci left: 1.392853e-03	ci right 1.515032e-03	k: 2194	n:1510000
Cons ci ratio: 1.397768e-03	ci left: 8.383471e-01	ci right 8.395204e-01	k: 1266791	n:1510000
KS ci ratio: 1.175097e-01	ci left: 6.931426e-04	ci right 7.803139e-04	k: 1111	n:1510000
EFEMP2   1510000 perm   1300 sec   (1161 perm/sec)   p_kst 7.357616e-04   p_cons 8.389344e-01   p_joint 1.452980e-03

Joint ci ratio: 8.332472e-02	ci left: 1.393352e-03	ci right 1.515139e-03	k: 2209	n:1520000
Cons ci ratio: 1.392930e-03	ci left: 8.383943e-01	ci right 8.395636e-01	k: 1275249	n:1520000
KS ci ratio: 1.172465e-01	ci left: 6.917753e-04	ci right 7.785663e-04	k: 1116	n:1520000
EFEMP2   1520000 perm   1316 sec   (1155 perm/sec)   p_kst 7.342105e-04   p_cons 8.389796e-01   p_joint 1.453289e-03

Joint ci ratio: 8.315572e-02	ci left: 1.390005e-03	ci right 1.511241e-03	k: 2218	n:1530000
Cons ci ratio: 1.388377e-03	ci left: 8.383951e-01	ci right 8.395605e-01	k: 1283637	n:1530000
KS ci ratio: 1.170372e-01	ci left: 6.897917e-04	ci right 7.761686e-04	k: 1120	n:1530000
EFEMP2   1530000 perm   1331 sec   (1150 perm/sec)   p_kst 7.320261e-04   p_cons 8.389784e-01   p_joint 1.449673e-03

Joint ci ratio: 8.334439e-02	ci left: 1.374620e-03	ci right 1.494800e-03	k: 2208	n:1540000
Cons ci ratio: 1.383558e-03	ci left: 8.384563e-01	ci right 8.396178e-01	k: 1292118	n:1540000
KS ci ratio: 1.167253e-01	ci left: 6.890947e-04	ci right 7.751385e-04	k: 1126	n:1540000
EFEMP2   1540000 perm   1346 sec   (1144 perm/sec)   p_kst 7.311688e-04   p_cons 8.390377e-01   p_joint 1.433766e-03

Joint ci ratio: 8.628951e-02	ci left: 1.272290e-03	ci right 1.387651e-03	k: 2060	n:1550000
Cons ci ratio: 1.379063e-03	ci left: 8.384631e-01	ci right 8.396208e-01	k: 1300516	n:1550000
KS ci ratio: 1.166221e-01	ci left: 6.859015e-04	ci right 7.714657e-04	k: 1128	n:1550000
EFEMP2   1550000 perm   1362 sec   (1138 perm/sec)   p_kst 7.277419e-04   p_cons 8.390426e-01   p_joint 1.329032e-03

Joint ci ratio: 8.606022e-02	ci left: 1.271033e-03	ci right 1.385959e-03	k: 2071	n:1560000
Cons ci ratio: 1.374725e-03	ci left: 8.384473e-01	ci right 8.396014e-01	k: 1308879	n:1560000
KS ci ratio: 1.162110e-01	ci left: 6.864836e-04	ci right 7.717978e-04	k: 1136	n:1560000
EFEMP2   1560000 perm   1377 sec   (1133 perm/sec)   p_kst 7.282051e-04   p_cons 8.390250e-01   p_joint 1.327564e-03

Joint ci ratio: 8.575034e-02	ci left: 1.272286e-03	ci right 1.386891e-03	k: 2086	n:1570000
Cons ci ratio: 1.370444e-03	ci left: 8.384286e-01	ci right 8.395790e-01	k: 1317237	n:1570000
KS ci ratio: 1.158550e-01	ci left: 6.864403e-04	ci right 7.714699e-04	k: 1143	n:1570000
EFEMP2   1570000 perm   1393 sec   (1127 perm/sec)   p_kst 7.280255e-04   p_cons 8.390045e-01   p_joint 1.328662e-03

Joint ci ratio: 8.540311e-02	ci left: 1.274763e-03	ci right 1.389102e-03	k: 2103	n:1580000
Cons ci ratio: 1.366257e-03	ci left: 8.383994e-01	ci right 8.395462e-01	k: 1325578	n:1580000
KS ci ratio: 1.152020e-01	ci left: 6.900859e-04	ci right 7.750526e-04	k: 1156	n:1580000
EFEMP2   1580000 perm   1409 sec   (1121 perm/sec)   p_kst 7.316456e-04   p_cons 8.389734e-01   p_joint 1.331013e-03

Joint ci ratio: 8.504000e-02	ci left: 1.277825e-03	ci right 1.391928e-03	k: 2121	n:1590000
Cons ci ratio: 1.362096e-03	ci left: 8.383730e-01	ci right 8.395163e-01	k: 1333923	n:1590000
KS ci ratio: 1.146091e-01	ci left: 6.930760e-04	ci right 7.779419e-04	k: 1168	n:1590000
EFEMP2   1590000 perm   1425 sec   (1116 perm/sec)   p_kst 7.345912e-04   p_cons 8.389453e-01   p_joint 1.333962e-03

Joint ci ratio: 8.474097e-02	ci left: 1.279015e-03	ci right 1.392802e-03	k: 2136	n:1600000
Cons ci ratio: 1.357862e-03	ci left: 8.383689e-01	ci right 8.395086e-01	k: 1342303	n:1600000
KS ci ratio: 1.144136e-01	ci left: 6.911727e-04	ci right 7.756514e-04	k: 1172	n:1600000
EFEMP2   1600000 perm   1440 sec   (1111 perm/sec)   p_kst 7.325000e-04   p_cons 8.389394e-01   p_joint 1.335000e-03

Joint ci ratio: 8.458294e-02	ci left: 1.275935e-03	ci right 1.389225e-03	k: 2144	n:1610000
Cons ci ratio: 1.353848e-03	ci left: 8.383287e-01	ci right 8.394651e-01	k: 1350625	n:1610000
KS ci ratio: 1.141222e-01	ci left: 6.904999e-04	ci right 7.746669e-04	k: 1178	n:1610000
EFEMP2   1610000 perm   1456 sec   (1106 perm/sec)   p_kst 7.316770e-04   p_cons 8.388975e-01   p_joint 1.331677e-03

Joint ci ratio: 8.430824e-02	ci left: 1.276518e-03	ci right 1.389474e-03	k: 2158	n:1620000
Cons ci ratio: 1.349626e-03	ci left: 8.383379e-01	ci right 8.394707e-01	k: 1359026	n:1620000
KS ci ratio: 1.137369e-01	ci left: 6.910351e-04	ci right 7.749639e-04	k: 1186	n:1620000
EFEMP2   1620000 perm   1473 sec   (1100 perm/sec)   p_kst 7.320988e-04   p_cons 8.389049e-01   p_joint 1.332099e-03

Joint ci ratio: 9.822879e-02	ci left: 9.281188e-04	ci right 1.024589e-03	k: 1590	n:1630000
Cons ci ratio: 1.345480e-03	ci left: 8.383396e-01	ci right 8.394690e-01	k: 1367415	n:1630000
KS ci ratio: 1.135459e-01	ci left: 6.891798e-04	ci right 7.727333e-04	k: 1190	n:1630000
EFEMP2   1630000 perm   1489 sec   (1095 perm/sec)   p_kst 7.300613e-04   p_cons 8.389049e-01   p_joint 9.754601e-04

Joint ci ratio: 9.804420e-02	ci left: 9.260282e-04	ci right 1.022090e-03	k: 1596	n:1640000
Cons ci ratio: 1.341372e-03	ci left: 8.383413e-01	ci right 8.394672e-01	k: 1375804	n:1640000
KS ci ratio: 1.134508e-01	ci left: 6.861623e-04	ci right 7.692757e-04	k: 1192	n:1640000
EFEMP2   1640000 perm   1505 sec   (1090 perm/sec)   p_kst 7.268293e-04   p_cons 8.389049e-01   p_joint 9.731707e-04

Joint ci ratio: 9.779960e-02	ci left: 9.251457e-04	ci right 1.020862e-03	k: 1604	n:1650000
Cons ci ratio: 1.337238e-03	ci left: 8.383558e-01	ci right 8.394782e-01	k: 1384214	n:1650000
KS ci ratio: 1.131195e-01	ci left: 6.861260e-04	ci right 7.689760e-04	k: 1199	n:1650000
EFEMP2   1650000 perm   1521 sec   (1085 perm/sec)   p_kst 7.266667e-04   p_cons 8.389176e-01   p_joint 9.721212e-04

Joint ci ratio: 9.746614e-02	ci left: 9.260372e-04	ci right 1.021501e-03	k: 1615	n:1660000
Cons ci ratio: 1.333270e-03	ci left: 8.383441e-01	ci right 8.394632e-01	k: 1392581	n:1660000
KS ci ratio: 1.127442e-01	ci left: 6.866758e-04	ci right 7.692990e-04	k: 1207	n:1660000
EFEMP2   1660000 perm   1538 sec   (1080 perm/sec)   p_kst 7.271084e-04   p_cons 8.389042e-01   p_joint 9.728916e-04

Joint ci ratio: 9.716596e-02	ci left: 9.263344e-04	ci right 1.021518e-03	k: 1625	n:1670000
Cons ci ratio: 1.329323e-03	ci left: 8.383356e-01	ci right 8.394513e-01	k: 1400953	n:1670000
KS ci ratio: 1.124653e-01	ci left: 6.860556e-04	ci right 7.683864e-04	k: 1213	n:1670000
EFEMP2   1670000 perm   1555 sec   (1074 perm/sec)   p_kst 7.263473e-04   p_cons 8.388940e-01   p_joint 9.730539e-04

Joint ci ratio: 9.675021e-02	ci left: 9.289518e-04	ci right 1.023972e-03	k: 1639	n:1680000
Cons ci ratio: 1.325468e-03	ci left: 8.383152e-01	ci right 8.394277e-01	k: 1409305	n:1680000
KS ci ratio: 1.119134e-01	ci left: 6.889144e-04	ci right 7.711558e-04	k: 1225	n:1680000
EFEMP2   1680000 perm   1571 sec   (1069 perm/sec)   p_kst 7.291667e-04   p_cons 8.388720e-01   p_joint 9.755952e-04

Joint ci ratio: 9.663261e-02	ci left: 9.257646e-04	ci right 1.020338e-03	k: 1643	n:1690000
Cons ci ratio: 1.321563e-03	ci left: 8.383123e-01	ci right 8.394215e-01	k: 1417686	n:1690000
KS ci ratio: 1.117769e-01	ci left: 6.865634e-04	ci right 7.684176e-04	k: 1228	n:1690000
EFEMP2   1690000 perm   1588 sec   (1064 perm/sec)   p_kst 7.266272e-04   p_cons 8.388675e-01   p_joint 9.721893e-04

Joint ci ratio: 9.648613e-02	ci left: 9.231890e-04	ci right 1.017348e-03	k: 1648	n:1700000
Cons ci ratio: 1.317638e-03	ci left: 8.383206e-01	ci right 8.394265e-01	k: 1426086	n:1700000
KS ci ratio: 1.116409e-01	ci left: 6.842402e-04	ci right 7.657115e-04	k: 1231	n:1700000
EFEMP2   1700000 perm   1604 sec   (1060 perm/sec)   p_kst 7.241176e-04   p_cons 8.388741e-01   p_joint 9.694118e-04

Joint ci ratio: 9.622392e-02	ci left: 9.229266e-04	ci right 1.016788e-03	k: 1657	n:1710000
Cons ci ratio: 1.313841e-03	ci left: 8.383095e-01	ci right 8.394122e-01	k: 1434453	n:1710000
KS ci ratio: 1.113700e-01	ci left: 6.836497e-04	ci right 7.648403e-04	k: 1237	n:1710000
EFEMP2   1710000 perm   1622 sec   (1055 perm/sec)   p_kst 7.233918e-04   p_cons 8.388614e-01   p_joint 9.690058e-04

Joint ci ratio: 9.596383e-02	ci left: 9.226675e-04	ci right 1.016235e-03	k: 1666	n:1720000
Cons ci ratio: 1.310125e-03	ci left: 8.382886e-01	ci right 8.393882e-01	k: 1442803	n:1720000
KS ci ratio: 1.109674e-01	ci left: 6.847621e-04	ci right 7.657715e-04	k: 1246	n:1720000
EFEMP2   1720000 perm   1638 sec   (1050 perm/sec)   p_kst 7.244186e-04   p_cons 8.388390e-01   p_joint 9.686047e-04

Joint ci ratio: 9.576306e-02	ci left: 9.212834e-04	ci right 1.014504e-03	k: 1673	n:1730000
Cons ci ratio: 1.306251e-03	ci left: 8.383073e-01	ci right 8.394037e-01	k: 1451221	n:1730000
KS ci ratio: 1.107014e-01	ci left: 6.841760e-04	ci right 7.649094e-04	k: 1252	n:1730000
EFEMP2   1730000 perm   1655 sec   (1045 perm/sec)   p_kst 7.236994e-04   p_cons 8.388561e-01   p_joint 9.670520e-04

Joint ci ratio: 8.171917e-02	ci left: 1.266709e-03	ci right 1.375192e-03	k: 2297	n:1740000
Cons ci ratio: 1.302468e-03	ci left: 8.383138e-01	ci right 8.394069e-01	k: 1459618	n:1740000
KS ci ratio: 1.103935e-01	ci left: 6.841557e-04	ci right 7.646475e-04	k: 1259	n:1740000
EFEMP2   1740000 perm   1672 sec   (1040 perm/sec)   p_kst 7.235632e-04   p_cons 8.388609e-01   p_joint 1.320115e-03

Joint ci ratio: 8.152434e-02	ci left: 1.265628e-03	ci right 1.373747e-03	k: 2308	n:1750000
Cons ci ratio: 1.298892e-03	ci left: 8.382841e-01	ci right 8.393742e-01	k: 1467952	n:1750000
KS ci ratio: 1.100446e-01	ci left: 6.846916e-04	ci right 7.649755e-04	k: 1267	n:1750000
EFEMP2   1750000 perm   1689 sec   (1036 perm/sec)   p_kst 7.240000e-04   p_cons 8.388297e-01   p_joint 1.318857e-03

Joint ci ratio: 8.122579e-02	ci left: 1.267900e-03	ci right 1.375797e-03	k: 2325	n:1760000
Cons ci ratio: 1.295140e-03	ci left: 8.382974e-01	ci right 8.393844e-01	k: 1476361	n:1760000
KS ci ratio: 1.096561e-01	ci left: 6.857745e-04	ci right 7.658831e-04	k: 1276	n:1760000
EFEMP2   1760000 perm   1707 sec   (1031 perm/sec)   p_kst 7.250000e-04   p_cons 8.388415e-01   p_joint 1.321023e-03

Joint ci ratio: 8.101710e-02	ci left: 1.267378e-03	ci right 1.374942e-03	k: 2337	n:1770000
Cons ci ratio: 1.291426e-03	ci left: 8.383095e-01	ci right 8.393934e-01	k: 1484768	n:1770000
KS ci ratio: 1.093995e-01	ci left: 6.851970e-04	ci right 7.650388e-04	k: 1282	n:1770000
EFEMP2   1770000 perm   1724 sec   (1027 perm/sec)   p_kst 7.242938e-04   p_cons 8.388520e-01   p_joint 1.320339e-03

Joint ci ratio: 8.072406e-02	ci left: 1.269616e-03	ci right 1.376961e-03	k: 2354	n:1780000
Cons ci ratio: 1.287856e-03	ci left: 8.382978e-01	ci right 8.393786e-01	k: 1493133	n:1780000
KS ci ratio: 1.090177e-01	ci left: 6.862657e-04	ci right 7.659350e-04	k: 1291	n:1780000
EFEMP2   1780000 perm   1741 sec   (1022 perm/sec)   p_kst 7.252809e-04   p_cons 8.388388e-01   p_joint 1.322472e-03

Joint ci ratio: 8.046816e-02	ci left: 1.270734e-03	ci right 1.377817e-03	k: 2369	n:1790000
Cons ci ratio: 1.284228e-03	ci left: 8.383047e-01	ci right 8.393825e-01	k: 1501531	n:1790000
KS ci ratio: 1.087655e-01	ci left: 6.856925e-04	ci right 7.650993e-04	k: 1297	n:1790000
EFEMP2   1790000 perm   1759 sec   (1017 perm/sec)   p_kst 7.245810e-04   p_cons 8.388441e-01   p_joint 1.323464e-03

Joint ci ratio: 8.021468e-02	ci left: 1.271840e-03	ci right 1.378663e-03	k: 2384	n:1800000
Cons ci ratio: 1.280773e-03	ci left: 8.382815e-01	ci right 8.393563e-01	k: 1509875	n:1800000
KS ci ratio: 1.083488e-01	ci left: 6.872878e-04	ci right 7.665550e-04	k: 1307	n:1800000
EFEMP2   1800000 perm   1777 sec   (1013 perm/sec)   p_kst 7.261111e-04   p_cons 8.388194e-01   p_joint 1.324444e-03

Joint ci ratio: 8.006385e-02	ci left: 1.269686e-03	ci right 1.376118e-03	k: 2393	n:1810000
Cons ci ratio: 1.277259e-03	ci left: 8.382768e-01	ci right 8.393487e-01	k: 1518252	n:1810000
KS ci ratio: 1.081424e-01	ci left: 6.861782e-04	ci right 7.651571e-04	k: 1312	n:1810000
EFEMP2   1810000 perm   1795 sec   (1008 perm/sec)   p_kst 7.248619e-04   p_cons 8.388133e-01   p_joint 1.322099e-03

Joint ci ratio: 7.983075e-02	ci left: 1.270249e-03	ci right 1.376403e-03	k: 2407	n:1820000
Cons ci ratio: 1.273720e-03	ci left: 8.382837e-01	ci right 8.393526e-01	k: 1526650	n:1820000
KS ci ratio: 1.079781e-01	ci left: 6.845464e-04	ci right 7.632102e-04	k: 1316	n:1820000
EFEMP2   1820000 perm   1813 sec   (1004 perm/sec)   p_kst 7.230769e-04   p_cons 8.388187e-01   p_joint 1.322527e-03

Joint ci ratio: 7.963260e-02	ci left: 1.269734e-03	ci right 1.375570e-03	k: 2419	n:1830000
Cons ci ratio: 1.270174e-03	ci left: 8.382982e-01	ci right 8.393642e-01	k: 1535062	n:1830000
KS ci ratio: 1.076517e-01	ci left: 6.850594e-04	ci right 7.635290e-04	k: 1324	n:1830000
EFEMP2   1830000 perm   1830 sec   (1000 perm/sec)   p_kst 7.234973e-04   p_cons 8.388317e-01   p_joint 1.321858e-03

Joint ci ratio: 7.941958e-02	ci left: 1.269758e-03	ci right 1.375300e-03	k: 2432	n:1840000
Cons ci ratio: 1.266619e-03	ci left: 8.383207e-01	ci right 8.393837e-01	k: 1543489	n:1840000
KS ci ratio: 1.073684e-01	ci left: 6.850383e-04	ci right 7.632860e-04	k: 1331	n:1840000
EFEMP2   1840000 perm   1848 sec   (996 perm/sec)   p_kst 7.233696e-04   p_cons 8.388527e-01   p_joint 1.321739e-03

Joint ci ratio: 7.919204e-02	ci left: 1.270312e-03	ci right 1.375583e-03	k: 2446	n:1850000
Cons ci ratio: 1.263127e-03	ci left: 8.383359e-01	ci right 8.393960e-01	k: 1551903	n:1850000
KS ci ratio: 1.070874e-01	ci left: 6.850177e-04	ci right 7.630454e-04	k: 1338	n:1850000
EFEMP2   1850000 perm   1866 sec   (991 perm/sec)   p_kst 7.232432e-04   p_cons 8.388665e-01   p_joint 1.322162e-03

Joint ci ratio: 7.895040e-02	ci left: 1.271387e-03	ci right 1.376412e-03	k: 2461	n:1860000
Cons ci ratio: 1.259781e-03	ci left: 8.383257e-01	ci right 8.393830e-01	k: 1560270	n:1860000
KS ci ratio: 1.067293e-01	ci left: 6.860442e-04	ci right 7.639110e-04	k: 1347	n:1860000
EFEMP2   1860000 perm   1884 sec   (987 perm/sec)   p_kst 7.241935e-04   p_cons 8.388548e-01   p_joint 1.323118e-03

Joint ci ratio: 7.914404e-02	ci left: 1.258298e-03	ci right 1.362508e-03	k: 2449	n:1870000
Cons ci ratio: 1.256511e-03	ci left: 8.383048e-01	ci right 8.393594e-01	k: 1568617	n:1870000
KS ci ratio: 1.063355e-01	ci left: 6.875806e-04	ci right 7.653159e-04	k: 1357	n:1870000
EFEMP2   1870000 perm   1902 sec   (983 perm/sec)   p_kst 7.256684e-04   p_cons 8.388326e-01   p_joint 1.309626e-03

Joint ci ratio: 7.895095e-02	ci left: 1.257862e-03	ci right 1.361769e-03	k: 2461	n:1880000
Cons ci ratio: 1.253072e-03	ci left: 8.383263e-01	ci right 8.393780e-01	k: 1577043	n:1880000
KS ci ratio: 1.060625e-01	ci left: 6.875478e-04	ci right 7.650674e-04	k: 1364	n:1880000
EFEMP2   1880000 perm   1921 sec   (979 perm/sec)   p_kst 7.255319e-04   p_cons 8.388527e-01   p_joint 1.309043e-03

Joint ci ratio: 7.871150e-02	ci left: 1.258986e-03	ci right 1.362657e-03	k: 2476	n:1890000
Cons ci ratio: 1.249708e-03	ci left: 8.383375e-01	ci right 8.393863e-01	k: 1585450	n:1890000
KS ci ratio: 1.057916e-01	ci left: 6.875156e-04	ci right 7.648212e-04	k: 1371	n:1890000
EFEMP2   1890000 perm   1939 sec   (975 perm/sec)   p_kst 7.253968e-04   p_cons 8.388624e-01   p_joint 1.310053e-03

Joint ci ratio: 7.852155e-02	ci left: 1.258552e-03	ci right 1.361925e-03	k: 2488	n:1900000
Cons ci ratio: 1.246436e-03	ci left: 8.383343e-01	ci right 8.393804e-01	k: 1593830	n:1900000
KS ci ratio: 1.054463e-01	ci left: 6.885088e-04	ci right 7.656577e-04	k: 1380	n:1900000
EFEMP2   1900000 perm   1957 sec   (971 perm/sec)   p_kst 7.263158e-04   p_cons 8.388579e-01   p_joint 1.309474e-03

Joint ci ratio: 7.828597e-02	ci left: 1.259662e-03	ci right 1.362802e-03	k: 2503	n:1910000
Cons ci ratio: 1.243182e-03	ci left: 8.383328e-01	ci right 8.393761e-01	k: 1602213	n:1910000
KS ci ratio: 1.052180e-01	ci left: 6.879626e-04	ci right 7.648731e-04	k: 1386	n:1910000
EFEMP2   1910000 perm   1976 sec   (967 perm/sec)   p_kst 7.256545e-04   p_cons 8.388550e-01   p_joint 1.310471e-03

Joint ci ratio: 7.813018e-02	ci left: 1.258208e-03	ci right 1.361014e-03	k: 2513	n:1920000
Cons ci ratio: 1.239791e-03	ci left: 8.383667e-01	ci right 8.394073e-01	k: 1610664	n:1920000
KS ci ratio: 1.050289e-01	ci left: 6.869152e-04	ci right 7.635621e-04	k: 1391	n:1920000
EFEMP2   1920000 perm   1994 sec   (963 perm/sec)   p_kst 7.244792e-04   p_cons 8.388875e-01   p_joint 1.308854e-03

Joint ci ratio: 7.791352e-02	ci left: 1.258801e-03	ci right 1.361358e-03	k: 2527	n:1930000
Cons ci ratio: 1.236449e-03	ci left: 8.383956e-01	ci right 8.394334e-01	k: 1619106	n:1930000
KS ci ratio: 1.046910e-01	ci left: 6.878970e-04	ci right 7.643912e-04	k: 1400	n:1930000
EFEMP2   1930000 perm   2013 sec   (959 perm/sec)   p_kst 7.253886e-04   p_cons 8.389150e-01   p_joint 1.309326e-03

Joint ci ratio: 7.991714e-02	ci left: 1.189149e-03	ci right 1.288638e-03	k: 2402	n:1940000
Cons ci ratio: 1.233216e-03	ci left: 8.384062e-01	ci right 8.394413e-01	k: 1627513	n:1940000
KS ci ratio: 1.041716e-01	ci left: 6.913792e-04	ci right 7.678559e-04	k: 1414	n:1940000
EFEMP2   1940000 perm   2033 sec   (954 perm/sec)   p_kst 7.288660e-04   p_cons 8.389242e-01   p_joint 1.238144e-03

Joint ci ratio: 7.980110e-02	ci left: 1.186568e-03	ci right 1.285692e-03	k: 2409	n:1950000
Cons ci ratio: 1.229943e-03	ci left: 8.384310e-01	ci right 8.394634e-01	k: 1635948	n:1950000
KS ci ratio: 1.040982e-01	ci left: 6.888325e-04	ci right 7.649706e-04	k: 1416	n:1950000
EFEMP2   1950000 perm   2052 sec   (950 perm/sec)   p_kst 7.261538e-04   p_cons 8.389477e-01   p_joint 1.235385e-03

Joint ci ratio: 7.679693e-02	ci left: 1.276559e-03	ci right 1.379006e-03	k: 2601	n:1960000
Cons ci ratio: 1.226777e-03	ci left: 8.384377e-01	ci right 8.394674e-01	k: 1644348	n:1960000
KS ci ratio: 1.039151e-01	ci left: 6.878027e-04	ci right 7.636850e-04	k: 1421	n:1960000
EFEMP2   1960000 perm   2071 sec   (947 perm/sec)   p_kst 7.250000e-04   p_cons 8.389531e-01   p_joint 1.327041e-03

Joint ci ratio: 7.659114e-02	ci left: 1.277049e-03	ci right 1.379248e-03	k: 2615	n:1970000
Cons ci ratio: 1.223734e-03	ci left: 8.384225e-01	ci right 8.394496e-01	k: 1652705	n:1970000
KS ci ratio: 1.035154e-01	ci left: 6.897503e-04	ci right 7.655370e-04	k: 1432	n:1970000
EFEMP2   1970000 perm   2090 sec   (943 perm/sec)   p_kst 7.269036e-04   p_cons 8.389365e-01   p_joint 1.327411e-03

Joint ci ratio: 7.641610e-02	ci left: 1.276544e-03	ci right 1.378459e-03	k: 2627	n:1980000
Cons ci ratio: 1.220753e-03	ci left: 8.383988e-01	ci right 8.394234e-01	k: 1661045	n:1980000
KS ci ratio: 1.032635e-01	ci left: 6.897106e-04	ci right 7.652974e-04	k: 1439	n:1980000
EFEMP2   1980000 perm   2109 sec   (939 perm/sec)   p_kst 7.267677e-04   p_cons 8.389116e-01   p_joint 1.326768e-03

Joint ci ratio: 7.624225e-02	ci left: 1.276044e-03	ci right 1.377677e-03	k: 2639	n:1990000
Cons ci ratio: 1.217514e-03	ci left: 8.384373e-01	ci right 8.394592e-01	k: 1669508	n:1990000
KS ci ratio: 1.029422e-01	ci left: 6.906508e-04	ci right 7.660908e-04	k: 1448	n:1990000
EFEMP2   1990000 perm   2128 sec   (935 perm/sec)   p_kst 7.276382e-04   p_cons 8.389487e-01   p_joint 1.326131e-03

Joint ci ratio: 7.387080e-02	ci left: 1.354052e-03	ci right 1.458400e-03	k: 2811	n:2000000
Cons ci ratio: 1.214443e-03	ci left: 8.384438e-01	ci right 8.394632e-01	k: 1677908	n:2000000
KS ci ratio: 1.026240e-01	ci left: 6.915818e-04	ci right 7.668760e-04	k: 1457	n:2000000
EFEMP2   2000000 perm   2147 sec   (932 perm/sec)   p_kst 7.285000e-04   p_cons 8.389540e-01   p_joint 1.405500e-03

Joint ci ratio: 7.368759e-02	ci left: 1.354152e-03	ci right 1.458238e-03	k: 2825	n:2010000
Cons ci ratio: 1.211299e-03	ci left: 8.384717e-01	ci right 8.394885e-01	k: 1686351	n:2010000
KS ci ratio: 1.023785e-01	ci left: 6.915344e-04	ci right 7.666325e-04	k: 1464	n:2010000
EFEMP2   2010000 perm   2167 sec   (928 perm/sec)   p_kst 7.283582e-04   p_cons 8.389806e-01   p_joint 1.405473e-03

Joint ci ratio: 7.353168e-02	ci left: 1.353280e-03	ci right 1.457069e-03	k: 2837	n:2020000
Cons ci ratio: 1.208310e-03	ci left: 8.384701e-01	ci right 8.394843e-01	k: 1694735	n:2020000
KS ci ratio: 1.021695e-01	ci left: 6.910053e-04	ci right 7.658836e-04	k: 1470	n:2020000
EFEMP2   2020000 perm   2186 sec   (924 perm/sec)   p_kst 7.277228e-04   p_cons 8.389777e-01   p_joint 1.404455e-03

Joint ci ratio: 7.337675e-02	ci left: 1.352416e-03	ci right 1.455911e-03	k: 2849	n:2030000
Cons ci ratio: 1.205233e-03	ci left: 8.384932e-01	ci right 8.395049e-01	k: 1703169	n:2030000
KS ci ratio: 1.019618e-01	ci left: 6.904816e-04	ci right 7.651418e-04	k: 1476	n:2030000
EFEMP2   2030000 perm   2205 sec   (921 perm/sec)   p_kst 7.270936e-04   p_cons 8.389995e-01   p_joint 1.403448e-03

Joint ci ratio: 7.312053e-02	ci left: 1.355411e-03	ci right 1.458758e-03	k: 2869	n:2040000
Cons ci ratio: 1.202214e-03	ci left: 8.385082e-01	ci right 8.395173e-01	k: 1711587	n:2040000
KS ci ratio: 1.016183e-01	ci left: 6.918740e-04	ci right 7.664178e-04	k: 1486	n:2040000
EFEMP2   2040000 perm   2225 sec   (917 perm/sec)   p_kst 7.284314e-04   p_cons 8.390132e-01   p_joint 1.406373e-03

Joint ci ratio: 7.296817e-02	ci left: 1.354546e-03	ci right 1.457602e-03	k: 2881	n:2050000
Cons ci ratio: 1.199309e-03	ci left: 8.385025e-01	ci right 8.395092e-01	k: 1719963	n:2050000
KS ci ratio: 1.015161e-01	ci left: 6.899252e-04	ci right 7.641798e-04	k: 1489	n:2050000
EFEMP2   2050000 perm   2245 sec   (913 perm/sec)   p_kst 7.263415e-04   p_cons 8.390063e-01   p_joint 1.405366e-03

Joint ci ratio: 7.279159e-02	ci left: 1.354643e-03	ci right 1.457447e-03	k: 2895	n:2060000
Cons ci ratio: 1.196322e-03	ci left: 8.385202e-01	ci right 8.395244e-01	k: 1728387	n:2060000
KS ci ratio: 1.013463e-01	ci left: 6.889417e-04	ci right 7.629590e-04	k: 1494	n:2060000
EFEMP2   2060000 perm   2265 sec   (909 perm/sec)   p_kst 7.252427e-04   p_cons 8.390228e-01   p_joint 1.405340e-03

Joint ci ratio: 7.252897e-02	ci left: 1.358059e-03	ci right 1.460735e-03	k: 2916	n:2070000
Cons ci ratio: 1.193337e-03	ci left: 8.385421e-01	ci right 8.395439e-01	k: 1736820	n:2070000
KS ci ratio: 1.010089e-01	ci left: 6.903222e-04	ci right 7.642263e-04	k: 1504	n:2070000
EFEMP2   2070000 perm   2286 sec   (906 perm/sec)   p_kst 7.265700e-04   p_cons 8.390435e-01   p_joint 1.408696e-03

Joint ci ratio: 7.448536e-02	ci left: 1.280266e-03	ci right 1.379784e-03	k: 2765	n:2080000
Cons ci ratio: 1.190388e-03	ci left: 8.385610e-01	ci right 8.395602e-01	k: 1745247	n:2080000
KS ci ratio: 1.007082e-01	ci left: 6.912211e-04	ci right 7.649881e-04	k: 1513	n:2080000
EFEMP2   2080000 perm   2307 sec   (902 perm/sec)   p_kst 7.274038e-04   p_cons 8.390611e-01   p_joint 1.329327e-03

Joint ci ratio: 7.435114e-02	ci left: 1.278836e-03	ci right 1.378056e-03	k: 2775	n:2090000
Cons ci ratio: 1.187746e-03	ci left: 8.385144e-01	ci right 8.395114e-01	k: 1753538	n:2090000
KS ci ratio: 1.005093e-01	ci left: 6.907124e-04	ci right 7.642709e-04	k: 1519	n:2090000
EFEMP2   2090000 perm   2328 sec   (898 perm/sec)   p_kst 7.267943e-04   p_cons 8.390134e-01   p_joint 1.327751e-03

Joint ci ratio: 7.415104e-02	ci left: 1.279757e-03	ci right 1.378769e-03	k: 2790	n:2100000
Cons ci ratio: 1.185088e-03	ci left: 8.384760e-01	ci right 8.394707e-01	k: 1761845	n:2100000
KS ci ratio: 1.002787e-01	ci left: 6.906729e-04	ci right 7.640485e-04	k: 1526	n:2100000
EFEMP2   2100000 perm   2349 sec   (894 perm/sec)   p_kst 7.266667e-04   p_cons 8.389738e-01   p_joint 1.328571e-03

Joint ci ratio: 7.397896e-02	ci left: 1.279739e-03	ci right 1.378510e-03	k: 2803	n:2110000
Cons ci ratio: 1.182355e-03	ci left: 8.384593e-01	ci right 8.394517e-01	k: 1770197	n:2110000
KS ci ratio: 1.000823e-01	ci left: 6.901719e-04	ci right 7.633423e-04	k: 1532	n:2110000
EFEMP2   2110000 perm   2370 sec   (890 perm/sec)   p_kst 7.260664e-04   p_cons 8.389559e-01   p_joint 1.328436e-03

Joint ci ratio: 8.052751e-02	ci left: 1.071540e-03	ci right 1.161907e-03	k: 2366	n:2120000
Cons ci ratio: 1.179513e-03	ci left: 8.384720e-01	ci right 8.394620e-01	k: 1778611	n:2120000
KS ci ratio: 9.972502e-02	ci left: 6.919755e-04	ci right 7.650599e-04	k: 1543	n:2120000
EFEMP2   2120000 perm   2391 sec   (887 perm/sec)   p_kst 7.278302e-04   p_cons 8.389675e-01   p_joint 1.116038e-03

Outputting figure to mutsig2_images.part000000000055/EFEMP2.3_1372_2120000_0.00072783_0.83897_0.001116.png
                gene_name: EFEMP2
               theta_stop: 0.100 
                    nperm: 2120000 
                     p_ks: 0.00073 
        ci_ks_bounds_left: 0.00069 
       ci_ks_bounds_right: 0.00077 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.0011 
     ci_joint_bounds_left: 0.0011 
    ci_joint_bounds_right: 0.0012 

Current progress: 44 percent done.
EFHB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.524631e-02	ci left: 6.977684e-01	ci right 7.157111e-01	k: 7068	n:10000
Cons ci ratio: 4.888187e-02	ci left: 3.817174e-01	ci right 4.009460e-01	k: 3913	n:10000
KS ci ratio: 2.066714e-02	ci left: 7.742826e-01	ci right 7.905526e-01	k: 7825	n:10000
EFHB   10000 perm   2 sec   (5084 perm/sec)   p_kst 7.825000e-01   p_cons 3.913000e-01   p_joint 7.068000e-01

Outputting figure to mutsig2_images.part000000000055/EFHB.3_2554_10000_0.7825_0.3913_0.7068.png
                gene_name: EFHB
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 47 percent done.
EFNB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.193694e-02	ci left: 9.095681e-01	ci right 9.205886e-01	k: 9152	n:10000
KS ci ratio: 3.670253e-02	ci left: 5.229629e-01	ci right 5.426180e-01	k: 5328	n:10000
EFNB1   10000 perm   2 sec   (6523 perm/sec)   p_kst 5.328000e-01   p_cons 9.152000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000055/EFNB1.3_1061_10000_0.5328_0.9152_1.png
                gene_name: EFNB1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 49 percent done.
EHD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.033410e-02	ci left: 2.285942e-01	ci right 2.453593e-01	k: 2369	n:10000
Cons ci ratio: 4.409049e-02	ci left: 4.316360e-01	ci right 4.511982e-01	k: 4414	n:10000
KS ci ratio: 8.522827e-02	ci left: 1.671068e-01	ci right 1.820833e-01	k: 1745	n:10000
EHD3   10000 perm   2 sec   (5752 perm/sec)   p_kst 1.745000e-01   p_cons 4.414000e-01   p_joint 2.369000e-01

Outputting figure to mutsig2_images.part000000000055/EHD3.3_1632_10000_0.1745_0.4414_0.2369.png
                gene_name: EHD3
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 51 percent done.
EHD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.306040e-02	ci left: 5.745671e-01	ci right 5.939838e-01	k: 5843	n:10000
KS ci ratio: 1.278569e-02	ci left: 8.979552e-01	ci right 9.096083e-01	k: 9039	n:10000
EHD4   10000 perm   2 sec   (5398 perm/sec)   p_kst 9.039000e-01   p_cons 5.843000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000055/EHD4.3_1650_10000_0.9039_0.5843_1.png
                gene_name: EHD4
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 53 percent done.
EIF2B5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.461602e-02	ci left: 5.520085e-01	ci right 5.715555e-01	k: 5618	n:10000
Cons ci ratio: 3.428867e-01	ci left: 1.068957e-02	ci right 1.520079e-02	k: 128	n:10000
KS ci ratio: 3.171733e-02	ci left: 5.946365e-01	ci right 6.139027e-01	k: 6043	n:10000
EIF2B5   10000 perm   2 sec   (5230 perm/sec)   p_kst 6.043000e-01   p_cons 1.280000e-02   p_joint 5.618000e-01

Joint ci ratio: 3.334086e-02	ci left: 4.018258e-01	ci right 4.155008e-01	k: 8173	n:20000
Cons ci ratio: 2.405811e-01	ci left: 1.152325e-02	ci right 1.472062e-02	k: 261	n:20000
KS ci ratio: 2.232103e-02	ci left: 5.997897e-01	ci right 6.133793e-01	k: 12132	n:20000
EIF2B5   20000 perm   4 sec   (4557 perm/sec)   p_kst 6.066000e-01   p_cons 1.305000e-02   p_joint 4.086500e-01

Joint ci ratio: 2.196053e-02	ci left: 5.093601e-01	ci right 5.207037e-01	k: 15451	n:30000
Cons ci ratio: 1.979722e-01	ci left: 1.162205e-02	ci right 1.420689e-02	k: 386	n:30000
KS ci ratio: 1.832224e-02	ci left: 5.985061e-01	ci right 6.096071e-01	k: 18122	n:30000
EIF2B5   30000 perm   7 sec   (4369 perm/sec)   p_kst 6.040667e-01   p_cons 1.286667e-02   p_joint 5.150333e-01

Joint ci ratio: 1.821536e-02	ci left: 5.316482e-01	ci right 5.414465e-01	k: 21462	n:40000
Cons ci ratio: 1.699543e-01	ci left: 1.200868e-02	ci right 1.426282e-02	k: 524	n:40000
KS ci ratio: 1.591969e-02	ci left: 5.976844e-01	ci right 6.073008e-01	k: 24100	n:40000
EIF2B5   40000 perm   9 sec   (4236 perm/sec)   p_kst 6.025000e-01   p_cons 1.310000e-02   p_joint 5.365500e-01

Joint ci ratio: 1.661988e-02	ci left: 5.222522e-01	ci right 5.310247e-01	k: 26332	n:50000
Cons ci ratio: 1.541995e-01	ci left: 1.177534e-02	ci right 1.376182e-02	k: 637	n:50000
KS ci ratio: 1.422243e-02	ci left: 5.987556e-01	ci right 6.073524e-01	k: 30153	n:50000
EIF2B5   50000 perm   12 sec   (4133 perm/sec)   p_kst 6.030600e-01   p_cons 1.274000e-02   p_joint 5.266400e-01

Joint ci ratio: 1.495588e-02	ci left: 5.297818e-01	ci right 5.377816e-01	k: 32027	n:60000
Cons ci ratio: 1.426252e-01	ci left: 1.154592e-02	ci right 1.333504e-02	k: 745	n:60000
KS ci ratio: 1.299577e-02	ci left: 5.986712e-01	ci right 6.065189e-01	k: 36156	n:60000
EIF2B5   60000 perm   15 sec   (4041 perm/sec)   p_kst 6.026000e-01   p_cons 1.241667e-02   p_joint 5.337833e-01

Joint ci ratio: 1.469742e-02	ci left: 5.003032e-01	ci right 5.077251e-01	k: 35281	n:70000
Cons ci ratio: 1.323796e-01	ci left: 1.155188e-02	ci right 1.320320e-02	k: 865	n:70000
KS ci ratio: 1.202855e-02	ci left: 5.990923e-01	ci right 6.063564e-01	k: 42191	n:70000
EIF2B5   70000 perm   18 sec   (3958 perm/sec)   p_kst 6.027286e-01   p_cons 1.235714e-02   p_joint 5.040143e-01

Joint ci ratio: 1.295832e-02	ci left: 5.300856e-01	ci right 5.370119e-01	k: 42684	n:80000
Cons ci ratio: 1.243213e-01	ci left: 1.151135e-02	ci right 1.304933e-02	k: 981	n:80000
KS ci ratio: 1.124209e-02	ci left: 5.997373e-01	ci right 6.065302e-01	k: 48251	n:80000
EIF2B5   80000 perm   21 sec   (3884 perm/sec)   p_kst 6.031375e-01   p_cons 1.226250e-02   p_joint 5.335500e-01

Joint ci ratio: 1.169517e-02	ci left: 5.519572e-01	ci right 5.584615e-01	k: 49969	n:90000
Cons ci ratio: 1.165588e-01	ci left: 1.168721e-02	ci right 1.314447e-02	k: 1116	n:90000
KS ci ratio: 1.059384e-02	ci left: 6.001729e-01	ci right 6.065760e-01	k: 54304	n:90000
EIF2B5   90000 perm   24 sec   (3813 perm/sec)   p_kst 6.033778e-01   p_cons 1.240000e-02   p_joint 5.552111e-01

Joint ci ratio: 1.108248e-02	ci left: 5.526838e-01	ci right 5.588530e-01	k: 55577	n:100000
Cons ci ratio: 1.099118e-01	ci left: 1.186920e-02	ci right 1.325929e-02	k: 1255	n:100000
KS ci ratio: 1.003967e-02	ci left: 6.008407e-01	ci right 6.069133e-01	k: 60388	n:100000
EIF2B5   100000 perm   27 sec   (3748 perm/sec)   p_kst 6.038800e-01   p_cons 1.255000e-02   p_joint 5.557700e-01

Joint ci ratio: 1.072715e-02	ci left: 5.453715e-01	ci right 5.512623e-01	k: 60315	n:110000
Cons ci ratio: 1.051287e-01	ci left: 1.182521e-02	ci right 1.314614e-02	k: 1372	n:110000
KS ci ratio: 9.566786e-03	ci left: 6.012664e-01	ci right 6.070553e-01	k: 66458	n:110000
EIF2B5   110000 perm   30 sec   (3684 perm/sec)   p_kst 6.041636e-01   p_cons 1.247273e-02   p_joint 5.483182e-01

Joint ci ratio: 1.030841e-02	ci left: 5.436697e-01	ci right 5.493114e-01	k: 65579	n:120000
Cons ci ratio: 1.014385e-01	ci left: 1.166777e-02	ci right 1.292263e-02	k: 1474	n:120000
KS ci ratio: 9.147326e-03	ci left: 6.020272e-01	ci right 6.075677e-01	k: 72576	n:120000
EIF2B5   120000 perm   33 sec   (3614 perm/sec)   p_kst 6.048000e-01   p_cons 1.228333e-02   p_joint 5.464917e-01

Joint ci ratio: 1.036066e-02	ci left: 5.213500e-01	ci right 5.267873e-01	k: 68129	n:130000
Cons ci ratio: 9.730237e-02	ci left: 1.173041e-02	ci right 1.293764e-02	k: 1602	n:130000
KS ci ratio: 8.793140e-03	ci left: 6.018821e-01	ci right 6.072055e-01	k: 78591	n:130000
EIF2B5   130000 perm   37 sec   (3549 perm/sec)   p_kst 6.045462e-01   p_cons 1.232308e-02   p_joint 5.240692e-01

Outputting figure to mutsig2_images.part000000000055/EIF2B5.3_2230_130000_0.60455_0.012323_0.52407.png
                gene_name: EIF2B5
               theta_stop: 0.097 
                    nperm: 130000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.012 
      ci_cons_bounds_left: 0.012 
     ci_cons_bounds_right: 0.013 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.53 

Current progress: 56 percent done.
EFHA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.769573e-02	ci left: 6.576653e-01	ci right 6.762373e-01	k: 6670	n:10000
Cons ci ratio: 2.785170e-02	ci left: 6.551489e-01	ci right 6.737553e-01	k: 6645	n:10000
KS ci ratio: 3.526734e-02	ci left: 5.427904e-01	ci right 5.623789e-01	k: 5526	n:10000
EFHA1   10000 perm   2 sec   (5892 perm/sec)   p_kst 5.526000e-01   p_cons 6.645000e-01   p_joint 6.670000e-01

Outputting figure to mutsig2_images.part000000000055/EFHA1.2_1353_10000_0.5526_0.6645_0.667.png
                gene_name: EFHA1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 58 percent done.
EFHC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.843343e-02	ci left: 3.860973e-01	ci right 4.053635e-01	k: 3957	n:10000
KS ci ratio: 6.964110e-02	ci left: 2.321499e-01	ci right 2.490015e-01	k: 2405	n:10000
EFHC1   10000 perm   2 sec   (5753 perm/sec)   p_kst 2.405000e-01   p_cons 3.957000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000055/EFHC1.2_1977_10000_0.2405_0.3957_1.png
                gene_name: EFHC1
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 60 percent done.
EFHC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.925190e-02	ci left: 1.544350e-01	ci right 1.689626e-01	k: 1616	n:10000
Cons ci ratio: 1.417902e-01	ci left: 6.594512e-02	ci right 7.610649e-02	k: 709	n:10000
KS ci ratio: 6.506595e-02	ci left: 2.575566e-01	ci right 2.749797e-01	k: 2662	n:10000
EFHC2   10000 perm   2 sec   (5513 perm/sec)   p_kst 2.662000e-01   p_cons 7.090000e-02   p_joint 1.616000e-01

Joint ci ratio: 1.038504e-01	ci left: 6.303638e-02	ci right 6.999029e-02	k: 1329	n:20000
Cons ci ratio: 9.815838e-02	ci left: 7.021377e-02	ci right 7.751070e-02	k: 1476	n:20000
KS ci ratio: 4.698830e-02	ci left: 2.520459e-01	ci right 2.642245e-01	k: 5162	n:20000
EFHC2   20000 perm   4 sec   (4896 perm/sec)   p_kst 2.581000e-01   p_cons 7.380000e-02   p_joint 6.645000e-02

Joint ci ratio: 5.316080e-02	ci left: 1.493391e-01	ci right 1.575281e-01	k: 4602	n:30000
Cons ci ratio: 7.893174e-02	ci left: 7.296036e-02	ci right 7.898873e-02	k: 2278	n:30000
KS ci ratio: 3.802006e-02	ci left: 2.566332e-01	ci right 2.666130e-01	k: 7848	n:30000
EFHC2   30000 perm   6 sec   (4647 perm/sec)   p_kst 2.616000e-01   p_cons 7.593333e-02   p_joint 1.534000e-01

Outputting figure to mutsig2_images.part000000000055/EFHC2.2_2310_30000_0.2616_0.075933_0.1534.png
                gene_name: EFHC2
               theta_stop: 0.079 
                    nperm: 30000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.076 
      ci_cons_bounds_left: 0.073 
     ci_cons_bounds_right: 0.079 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 62 percent done.
EFNB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.479208e-01	ci left: 5.903663e-03	ci right 9.392367e-03	k: 75	n:10000
Cons ci ratio: 3.571839e-01	ci left: 9.776646e-03	ci right 1.411465e-02	k: 118	n:10000
KS ci ratio: 7.306490e-02	ci left: 2.152677e-01	ci right 2.316936e-01	k: 2234	n:10000
EFNB2   10000 perm   2 sec   (6277 perm/sec)   p_kst 2.234000e-01   p_cons 1.180000e-02   p_joint 7.500000e-03

Joint ci ratio: 2.558573e-01	ci left: 1.011552e-02	ci right 1.312898e-02	k: 231	n:20000
Cons ci ratio: 2.610287e-01	ci left: 9.694399e-03	ci right 1.265029e-02	k: 222	n:20000
KS ci ratio: 5.186701e-02	ci left: 2.163551e-01	ci right 2.279258e-01	k: 4442	n:20000
EFNB2   20000 perm   4 sec   (5436 perm/sec)   p_kst 2.221000e-01   p_cons 1.110000e-02   p_joint 1.155000e-02

Joint ci ratio: 2.755631e-01	ci left: 5.777180e-03	ci right 7.653601e-03	k: 200	n:30000
Cons ci ratio: 2.179593e-01	ci left: 9.503598e-03	ci right 1.185927e-02	k: 319	n:30000
KS ci ratio: 4.246203e-02	ci left: 2.165138e-01	ci right 2.259402e-01	k: 6636	n:30000
EFNB2   30000 perm   6 sec   (5009 perm/sec)   p_kst 2.212000e-01   p_cons 1.063333e-02   p_joint 6.666667e-03

Joint ci ratio: 2.373121e-01	ci left: 5.971058e-03	ci right 7.601783e-03	k: 270	n:40000
Cons ci ratio: 1.889083e-01	ci left: 9.643388e-03	ci right 1.167859e-02	k: 425	n:40000
KS ci ratio: 3.692690e-02	ci left: 2.157249e-01	ci right 2.238658e-01	k: 8791	n:40000
EFNB2   40000 perm   8 sec   (4874 perm/sec)   p_kst 2.197750e-01   p_cons 1.062500e-02   p_joint 6.750000e-03

Joint ci ratio: 2.154023e-01	ci left: 5.871172e-03	ci right 7.307016e-03	k: 328	n:50000
Cons ci ratio: 1.700170e-01	ci left: 9.625067e-03	ci right 1.143244e-02	k: 525	n:50000
KS ci ratio: 3.282753e-02	ci left: 2.182442e-01	ci right 2.255481e-01	k: 11094	n:50000
EFNB2   50000 perm   11 sec   (4709 perm/sec)   p_kst 2.218800e-01   p_cons 1.050000e-02   p_joint 6.560000e-03

Joint ci ratio: 1.963347e-01	ci left: 5.951873e-03	ci right 7.263203e-03	k: 395	n:60000
Cons ci ratio: 1.551046e-01	ci left: 9.715840e-03	ci right 1.136535e-02	k: 631	n:60000
KS ci ratio: 2.994853e-02	ci left: 2.187793e-01	ci right 2.254476e-01	k: 13326	n:60000
EFNB2   60000 perm   13 sec   (4608 perm/sec)   p_kst 2.221000e-01   p_cons 1.051667e-02   p_joint 6.583333e-03

Joint ci ratio: 1.839887e-01	ci left: 5.849915e-03	ci right 7.048692e-03	k: 450	n:70000
Cons ci ratio: 1.455399e-01	ci left: 9.510181e-03	ci right 1.101654e-02	k: 717	n:70000
KS ci ratio: 2.769053e-02	ci left: 2.194801e-01	ci right 2.256572e-01	k: 15579	n:70000
EFNB2   70000 perm   16 sec   (4500 perm/sec)   p_kst 2.225571e-01   p_cons 1.024286e-02   p_joint 6.428571e-03

Joint ci ratio: 1.737122e-01	ci left: 5.775396e-03	ci right 6.885862e-03	k: 505	n:80000
Cons ci ratio: 1.367792e-01	ci left: 9.466981e-03	ci right 1.086888e-02	k: 812	n:80000
KS ci ratio: 2.593465e-02	ci left: 2.192484e-01	ci right 2.250217e-01	k: 17770	n:80000
EFNB2   80000 perm   18 sec   (4405 perm/sec)   p_kst 2.221250e-01   p_cons 1.015000e-02   p_joint 6.312500e-03

Joint ci ratio: 1.638137e-01	ci left: 5.804144e-03	ci right 6.850280e-03	k: 568	n:90000
Cons ci ratio: 1.292874e-01	ci left: 9.457016e-03	ci right 1.077485e-02	k: 909	n:90000
KS ci ratio: 2.438666e-02	ci left: 2.203281e-01	ci right 2.257786e-01	k: 20074	n:90000
EFNB2   90000 perm   21 sec   (4322 perm/sec)   p_kst 2.230444e-01   p_cons 1.010000e-02   p_joint 6.311111e-03

Joint ci ratio: 1.545758e-01	ci left: 5.895882e-03	ci right 6.893074e-03	k: 638	n:100000
Cons ci ratio: 1.214519e-01	ci left: 9.683460e-03	ci right 1.094519e-02	k: 1030	n:100000
KS ci ratio: 2.313292e-02	ci left: 2.205028e-01	ci right 2.256733e-01	k: 22308	n:100000
EFNB2   100000 perm   24 sec   (4236 perm/sec)   p_kst 2.230800e-01   p_cons 1.030000e-02   p_joint 6.380000e-03

Joint ci ratio: 1.485459e-01	ci left: 5.823425e-03	ci right 6.766526e-03	k: 691	n:110000
Cons ci ratio: 1.166393e-01	ci left: 9.570473e-03	ci right 1.076466e-02	k: 1117	n:110000
KS ci ratio: 2.206558e-02	ci left: 2.204795e-01	ci right 2.254078e-01	k: 24523	n:110000
EFNB2   110000 perm   26 sec   (4157 perm/sec)   p_kst 2.229364e-01   p_cons 1.015455e-02   p_joint 6.281818e-03

Joint ci ratio: 1.434615e-01	ci left: 5.739569e-03	ci right 6.634547e-03	k: 741	n:120000
Cons ci ratio: 1.124983e-01	ci left: 9.452843e-03	ci right 1.058769e-02	k: 1201	n:120000
KS ci ratio: 2.110611e-02	ci left: 2.209130e-01	ci right 2.256337e-01	k: 26792	n:120000
EFNB2   120000 perm   29 sec   (4081 perm/sec)   p_kst 2.232667e-01   p_cons 1.000833e-02   p_joint 6.175000e-03

Joint ci ratio: 1.362089e-01	ci left: 5.899385e-03	ci right 6.769010e-03	k: 822	n:130000
Cons ci ratio: 1.077165e-01	ci left: 9.541100e-03	ci right 1.063477e-02	k: 1310	n:130000
KS ci ratio: 2.026361e-02	ci left: 2.212531e-01	ci right 2.257900e-01	k: 29057	n:130000
EFNB2   130000 perm   32 sec   (4003 perm/sec)   p_kst 2.235154e-01   p_cons 1.007692e-02   p_joint 6.323077e-03

Joint ci ratio: 1.312771e-01	ci left: 5.912949e-03	ci right 6.750552e-03	k: 885	n:140000
Cons ci ratio: 1.037925e-01	ci left: 9.561946e-03	ci right 1.061564e-02	k: 1411	n:140000
KS ci ratio: 1.951977e-02	ci left: 2.214552e-01	ci right 2.258277e-01	k: 31309	n:140000
EFNB2   140000 perm   36 sec   (3931 perm/sec)   p_kst 2.236357e-01   p_cons 1.007857e-02   p_joint 6.321429e-03

Joint ci ratio: 1.257823e-01	ci left: 6.028512e-03	ci right 6.844076e-03	k: 964	n:150000
Cons ci ratio: 9.990211e-02	ci left: 9.652155e-03	ci right 1.067358e-02	k: 1523	n:150000
KS ci ratio: 1.884430e-02	ci left: 2.217792e-01	ci right 2.260048e-01	k: 33583	n:150000
EFNB2   150000 perm   39 sec   (3859 perm/sec)   p_kst 2.238867e-01   p_cons 1.015333e-02   p_joint 6.426667e-03

Joint ci ratio: 1.212754e-01	ci left: 6.093896e-03	ci right 6.886646e-03	k: 1037	n:160000
Cons ci ratio: 9.650815e-02	ci left: 9.713429e-03	ci right 1.070444e-02	k: 1632	n:160000
KS ci ratio: 1.825082e-02	ci left: 2.217534e-01	ci right 2.258441e-01	k: 35807	n:160000
EFNB2   160000 perm   42 sec   (3788 perm/sec)   p_kst 2.237938e-01   p_cons 1.020000e-02   p_joint 6.481250e-03

Joint ci ratio: 1.166932e-01	ci left: 6.209160e-03	ci right 6.984281e-03	k: 1120	n:170000
Cons ci ratio: 9.295412e-02	ci left: 9.871450e-03	ci right 1.083947e-02	k: 1759	n:170000
KS ci ratio: 1.770499e-02	ci left: 2.218323e-01	ci right 2.258007e-01	k: 38048	n:170000
EFNB2   170000 perm   46 sec   (3722 perm/sec)   p_kst 2.238118e-01   p_cons 1.034706e-02   p_joint 6.588235e-03

Joint ci ratio: 1.133545e-01	ci left: 6.225723e-03	ci right 6.979189e-03	k: 1187	n:180000
Cons ci ratio: 9.020150e-02	ci left: 9.914734e-03	ci right 1.085669e-02	k: 1868	n:180000
KS ci ratio: 1.721172e-02	ci left: 2.217766e-01	ci right 2.256323e-01	k: 40266	n:180000
EFNB2   180000 perm   49 sec   (3661 perm/sec)   p_kst 2.237000e-01   p_cons 1.037778e-02   p_joint 6.594444e-03

Joint ci ratio: 8.664543e-02	ci left: 1.019587e-02	ci right 1.112442e-02	k: 2024	n:190000
Cons ci ratio: 8.763500e-02	ci left: 9.964136e-03	ci right 1.088247e-02	k: 1979	n:190000
KS ci ratio: 1.677097e-02	ci left: 2.214500e-01	ci right 2.252005e-01	k: 42431	n:190000
EFNB2   190000 perm   53 sec   (3601 perm/sec)   p_kst 2.233211e-01   p_cons 1.041579e-02   p_joint 1.065263e-02

Outputting figure to mutsig2_images.part000000000055/EFNB2.2_1022_190000_0.22332_0.010416_0.010653.png
                gene_name: EFNB2
               theta_stop: 0.088 
                    nperm: 190000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.010 
      ci_cons_bounds_left: 0.0100 
     ci_cons_bounds_right: 0.011 
                  p_joint: 0.011 
     ci_joint_bounds_left: 0.010 
    ci_joint_bounds_right: 0.011 

Current progress: 64 percent done.
EFS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.072191e-01	ci left: 1.115436e-01	ci right 1.242799e-01	k: 1178	n:10000
Cons ci ratio: 1.359049e-01	ci left: 7.155808e-02	ci right 8.209001e-02	k: 767	n:10000
KS ci ratio: 3.418225e-02	ci left: 5.582226e-01	ci right 5.777378e-01	k: 5680	n:10000
EFS   10000 perm   2 sec   (5835 perm/sec)   p_kst 5.680000e-01   p_cons 7.670000e-02   p_joint 1.178000e-01

Joint ci ratio: 7.285306e-02	ci left: 1.218242e-01	ci right 1.310847e-01	k: 2528	n:20000
Cons ci ratio: 9.234391e-02	ci left: 7.882080e-02	ci right 8.650104e-02	k: 1652	n:20000
KS ci ratio: 2.436214e-02	ci left: 5.572438e-01	ci right 5.710375e-01	k: 11283	n:20000
EFS   20000 perm   4 sec   (5049 perm/sec)   p_kst 5.641500e-01   p_cons 8.260000e-02   p_joint 1.264000e-01

Outputting figure to mutsig2_images.part000000000055/EFS.2_1710_20000_0.56415_0.0826_0.1264.png
                gene_name: EFS
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.083 
      ci_cons_bounds_left: 0.079 
     ci_cons_bounds_right: 0.087 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 67 percent done.
EFTUD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.888151e-02	ci left: 2.979669e-01	ci right 3.161456e-01	k: 3070	n:10000
Cons ci ratio: 1.080520e-01	ci left: 1.099814e-01	ci right 1.226430e-01	k: 1162	n:10000
KS ci ratio: 5.570431e-02	ci left: 3.218765e-01	ci right 3.404219e-01	k: 3311	n:10000
EFTUD2   10000 perm   2 sec   (5166 perm/sec)   p_kst 3.311000e-01   p_cons 1.162000e-01   p_joint 3.070000e-01

Joint ci ratio: 4.592075e-02	ci left: 2.608781e-01	ci right 2.731897e-01	k: 5340	n:20000
Cons ci ratio: 7.666701e-02	ci left: 1.111506e-01	ci right 1.200615e-01	k: 2311	n:20000
KS ci ratio: 3.936669e-02	ci left: 3.248762e-01	ci right 3.379728e-01	k: 6628	n:20000
EFTUD2   20000 perm   4 sec   (4588 perm/sec)   p_kst 3.314000e-01   p_cons 1.155500e-01   p_joint 2.670000e-01

Outputting figure to mutsig2_images.part000000000055/EFTUD2.2_3027_20000_0.3314_0.11555_0.267.png
                gene_name: EFTUD2
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 69 percent done.
EGFL6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.224168e-02	ci left: 9.054543e-01	ci right 9.167049e-01	k: 9112	n:10000
KS ci ratio: 5.249459e-02	ci left: 3.484968e-01	ci right 3.673860e-01	k: 3579	n:10000
EGFL6   10000 perm   2 sec   (5890 perm/sec)   p_kst 3.579000e-01   p_cons 9.112000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000055/EGFL6.2_1713_10000_0.3579_0.9112_1.png
                gene_name: EGFL6
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
EGLN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.804326e-02	ci left: 5.050514e-01	ci right 5.247399e-01	k: 5149	n:10000
Cons ci ratio: 1.469696e-02	ci left: 8.701983e-01	ci right 8.831813e-01	k: 8768	n:10000
KS ci ratio: 5.686859e-02	ci left: 3.128451e-01	ci right 3.312586e-01	k: 3220	n:10000
EGLN3   10000 perm   2 sec   (6495 perm/sec)   p_kst 3.220000e-01   p_cons 8.768000e-01   p_joint 5.149000e-01

Outputting figure to mutsig2_images.part000000000055/EGLN3.2_740_10000_0.322_0.8768_0.5149.png
                gene_name: EGLN3
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.52 

Current progress: 73 percent done.
EGR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.917392e-03	ci left: 9.819904e-01	ci right 9.869215e-01	k: 9846	n:10000
Cons ci ratio: 8.205725e-02	ci left: 1.781208e-01	ci right 1.934627e-01	k: 1857	n:10000
KS ci ratio: 2.069142e-02	ci left: 7.738773e-01	ci right 7.901581e-01	k: 7821	n:10000
EGR1   10000 perm   2 sec   (6118 perm/sec)   p_kst 7.821000e-01   p_cons 1.857000e-01   p_joint 9.846000e-01

Outputting figure to mutsig2_images.part000000000055/EGR1.2_1640_10000_0.7821_0.1857_0.9846.png
                gene_name: EGR1
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 76 percent done.
EGR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.370007e-02	ci left: 8.849326e-01	ci right 8.972385e-01	k: 8912	n:10000
KS ci ratio: 3.451070e-02	ci left: 5.535118e-01	ci right 5.730513e-01	k: 5633	n:10000
EGR3   10000 perm   2 sec   (6239 perm/sec)   p_kst 5.633000e-01   p_cons 8.912000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000055/EGR3.2_1172_10000_0.5633_0.8912_1.png
                gene_name: EGR3
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
EHF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.094934e-03	ci left: 9.870846e-01	ci right 9.912230e-01	k: 9893	n:10000
Cons ci ratio: 6.496620e-02	ci left: 2.581502e-01	ci right 2.755858e-01	k: 2668	n:10000
KS ci ratio: 1.749659e-02	ci left: 8.264586e-01	ci right 8.411464e-01	k: 8339	n:10000
EHF   10000 perm   1 sec   (6758 perm/sec)   p_kst 8.339000e-01   p_cons 2.668000e-01   p_joint 9.893000e-01

Outputting figure to mutsig2_images.part000000000055/EHF.2_935_10000_0.8339_0.2668_0.9893.png
                gene_name: EHF
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 80 percent done.
EIF1AD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.069985e-02	ci left: 1.831396e-01	ci right 1.986409e-01	k: 1908	n:10000
KS ci ratio: 1.452325e-01	ci left: 6.294902e-02	ci right 7.290448e-02	k: 678	n:10000
EIF1AD   10000 perm   2 sec   (6648 perm/sec)   p_kst 6.780000e-02   p_cons 1.908000e-01   p_joint 1

Joint ci ratio: 3.833275e-02	ci left: 3.367177e-01	ci right 3.499278e-01	k: 6866	n:20000
Cons ci ratio: 5.780443e-02	ci left: 1.815181e-01	ci right 1.923731e-01	k: 3738	n:20000
KS ci ratio: 1.023740e-01	ci left: 6.479305e-02	ci right 7.183308e-02	k: 1365	n:20000
EIF1AD   20000 perm   3 sec   (5774 perm/sec)   p_kst 6.825000e-02   p_cons 1.869000e-01   p_joint 3.433000e-01

Joint ci ratio: 3.133676e-02	ci left: 3.373945e-01	ci right 3.481693e-01	k: 10283	n:30000
Cons ci ratio: 4.760228e-02	ci left: 1.799596e-01	ci right 1.887683e-01	k: 5530	n:30000
KS ci ratio: 8.416313e-02	ci left: 6.458829e-02	ci right 7.029583e-02	k: 2022	n:30000
EIF1AD   30000 perm   6 sec   (5447 perm/sec)   p_kst 6.740000e-02   p_cons 1.843333e-01   p_joint 3.427667e-01

Outputting figure to mutsig2_images.part000000000055/EIF1AD.2_518_30000_0.0674_0.18433_0.34277.png
                gene_name: EIF1AD
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.067 
        ci_ks_bounds_left: 0.065 
       ci_ks_bounds_right: 0.070 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 82 percent done.
EIF2B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.920630e-02	ci left: 6.335189e-01	ci right 6.523977e-01	k: 6430	n:10000
KS ci ratio: 2.701279e-02	ci left: 6.687414e-01	ci right 6.871549e-01	k: 6780	n:10000
EIF2B1   10000 perm   2 sec   (6186 perm/sec)   p_kst 6.780000e-01   p_cons 6.430000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000055/EIF2B1.2_954_10000_0.678_0.643_1.png
                gene_name: EIF2B1
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
EIF2C1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.120912e-02	ci left: 6.023677e-01	ci right 6.215670e-01	k: 6120	n:10000
KS ci ratio: 1.225679e-02	ci left: 9.052487e-01	ci right 9.165106e-01	k: 9110	n:10000
EIF2C1   10000 perm   2 sec   (5402 perm/sec)   p_kst 9.110000e-01   p_cons 6.120000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000055/EIF2C1.2_2650_10000_0.911_0.612_1.png
                gene_name: EIF2C1
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
EIF3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.767058e-02	ci left: 1.950552e-01	ci right 2.109182e-01	k: 2029	n:10000
KS ci ratio: 2.181098e-02	ci left: 7.551466e-01	ci right 7.718996e-01	k: 7636	n:10000
EIF3B   10000 perm   2 sec   (5469 perm/sec)   p_kst 7.636000e-01   p_cons 2.029000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000055/EIF3B.2_2517_10000_0.7636_0.2029_1.png
                gene_name: EIF3B
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
EIF3F
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.822696e-02	ci left: 1.927894e-01	ci right 2.085854e-01	k: 2006	n:10000
Cons ci ratio: 8.355196e-02	ci left: 1.728091e-01	ci right 1.879776e-01	k: 1803	n:10000
KS ci ratio: 4.656160e-02	ci left: 4.050199e-01	ci right 4.244298e-01	k: 4147	n:10000
EIF3F   10000 perm   2 sec   (6256 perm/sec)   p_kst 4.147000e-01   p_cons 1.803000e-01   p_joint 2.006000e-01

Outputting figure to mutsig2_images.part000000000055/EIF3F.2_1106_10000_0.4147_0.1803_0.2006.png
                gene_name: EIF3F
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 91 percent done.
EIF3H
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.658135e-02	ci left: 2.487538e-01	ci right 2.659878e-01	k: 2573	n:10000
KS ci ratio: 2.695714e-02	ci left: 6.696478e-01	ci right 6.880479e-01	k: 6789	n:10000
EIF3H   10000 perm   2 sec   (6337 perm/sec)   p_kst 6.789000e-01   p_cons 2.573000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000055/EIF3H.2_1091_10000_0.6789_0.2573_1.png
                gene_name: EIF3H
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
EIF3K
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.037302e-02	ci left: 2.283967e-01	ci right 2.451569e-01	k: 2367	n:10000
Cons ci ratio: 2.388154e-02	ci left: 7.204755e-01	ci right 7.379908e-01	k: 7293	n:10000
KS ci ratio: 1.010923e-01	ci left: 1.240539e-01	ci right 1.373620e-01	k: 1306	n:10000
EIF3K   10000 perm   2 sec   (6573 perm/sec)   p_kst 1.306000e-01   p_cons 7.293000e-01   p_joint 2.367000e-01

Joint ci ratio: 4.996215e-02	ci left: 2.294350e-01	ci right 2.412420e-01	k: 4706	n:20000
Cons ci ratio: 1.766726e-02	ci left: 7.047630e-01	ci right 7.173756e-01	k: 14222	n:20000
KS ci ratio: 7.128052e-02	ci left: 1.266482e-01	ci right 1.360592e-01	k: 2626	n:20000
EIF3K   20000 perm   4 sec   (5625 perm/sec)   p_kst 1.313000e-01   p_cons 7.111000e-01   p_joint 2.353000e-01

Outputting figure to mutsig2_images.part000000000055/EIF3K.2_689_20000_0.1313_0.7111_0.2353.png
                gene_name: EIF3K
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 96 percent done.
EIF3L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.540245e-02	ci left: 8.594729e-01	ci right 8.729130e-01	k: 8663	n:10000
KS ci ratio: 1.537586e-02	ci left: 8.598813e-01	ci right 8.733044e-01	k: 8667	n:10000
EIF3L   10000 perm   2 sec   (6114 perm/sec)   p_kst 8.667000e-01   p_cons 8.663000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000055/EIF3L.2_1747_10000_0.8667_0.8663_1.png
                gene_name: EIF3L
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
EIF4A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.451772e-02	ci left: 5.534115e-01	ci right 5.729516e-01	k: 5632	n:10000
Cons ci ratio: 3.576934e-02	ci left: 5.357789e-01	ci right 5.553945e-01	k: 5456	n:10000
KS ci ratio: 3.708012e-02	ci left: 5.178584e-01	ci right 5.375255e-01	k: 5277	n:10000
EIF4A2   10000 perm   2 sec   (6202 perm/sec)   p_kst 5.277000e-01   p_cons 5.456000e-01   p_joint 5.632000e-01

Outputting figure to mutsig2_images.part000000000055/EIF4A2.2_1268_10000_0.5277_0.5456_0.5632.png
                gene_name: EIF4A2
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000055
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 55 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1712>
Subject: Job 8004045: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1712>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000056> was used as the working directory.
Started at Sun Nov 11 15:05:30 2012
Results reported at Sun Nov 11 15:33:47 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000056.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000056.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 56  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000056.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1764.10 sec.
    Max Memory :      4744 MB
    Max Swap   :      7072 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
56
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 56
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 56: processing genes 4977 - 5066
Calculating significance of each gene.
Using projection method.
4977	EIF4E1B	1
4978	EIF4E2	1
4979	EIF4E3	5.030463e-02
4980	EIF4EBP1	1
4981	EIF4EBP2	1
4982	EIF4EBP3	1
4983	EIF4ENIF1	1
4984	EIF4G1	9.822698e-01
4985	EIF4G2	1
4986	EIF4G3	9.064418e-01
4987	EIF4H	1
4988	EIF5	2.020248e-01
4989	EIF5A	1
4990	EIF5A2	3.465469e-01
4991	EIF5AL1	1
4992	EIF5B	9.781309e-01
4993	EIF6	5.685112e-01
4994	ELAC1	1
4995	ELAC2	8.657801e-01
4996	ELANE	6.894922e-01
4997	ELAVL1	6.185691e-01
4998	ELAVL2	1.210751e-01
4999	ELAVL3	4.785840e-01
5000/18094 5000	ELAVL4	5.092937e-01
5001	ELF1	3.908976e-01
5002	ELF2	1
5003	ELF3	1
5004	ELF4	9.585696e-01
5005	ELF5	1
5006	ELFN2	5.460945e-01
5007	ELK1	1
5008	ELK3	1
5009	ELK4	7.643453e-01
5010	ELL	3.387017e-01
5011	ELL2	5.425773e-01
5012	ELL3	3.324226e-01
5013	ELMO1	7.490929e-01
5014	ELMO2	8.408640e-01
5015	ELMO3	9.690025e-01
5016	ELMOD1	1.142729e-01
5017	ELMOD2	1
5018	ELMOD3	5.057325e-01
5019	ELN	1
5020	ELOF1	1
5021	ELOVL1	1
5022	ELOVL2	1
5023	ELOVL3	6.062733e-02
5024	ELOVL4	7.292383e-01
5025	ELOVL5	6.785929e-01
5026	ELOVL6	5.845345e-01
5027	ELOVL7	4.170048e-01
5028	ELP2	6.944900e-01
5029	ELP3	7.614173e-01
5030	ELP4	7.616041e-01
5031	ELSPBP1	4.469637e-01
5032	ELTD1	3.337027e-09
5033	EMB	4.832421e-01
5034	EMCN	2.749831e-01
5035	EMD	3.440097e-01
5036	EME1	3.663562e-01
5037	EME2	6.288798e-01
5038	EMG1	6.436905e-01
5039	EMID1	3.432927e-01
5040	EMID2	7.570145e-01
5041	EMILIN1	3.999538e-01
5042	EMILIN2	9.330340e-01
5043	EMILIN3	9.436665e-01
5044	EML1	6.390060e-01
5045	EML2	4.285253e-01
5046	EML3	7.212297e-01
5047	EML4	6.918560e-01
5048	EML5	9.631978e-01
5049	EMP1	1
5050	EMP2	1
5051	EMP3	3.821423e-01
5052	EMR1	5.582271e-03
5053	EMR2	6.276909e-01
5054	EMR3	1.246088e-01
5055	EMX1	3.238980e-01
5056	EMX2	1
5057	EN1	3.639971e-01
5058	EN2	1
5059	ENAH	7.726183e-01
5060	ENAM	2.618813e-02
5061	ENC1	1
5062	ENDOD1	5.372482e-01
5063	ENDOG	1
5064	ENDOU	6.565255e-01
5065	ENG	1
5066	ENGASE	3.477530e-01
Done

Running MutSig 2:
Scatter job 56: processing genes 4977 - 5066
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ELTD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.676571e-02	ci left: 6.727704e-01	ci right 6.911235e-01	k: 6820	n:10000
Cons ci ratio: 2.101274e-02	ci left: 7.685089e-01	ci right 7.849296e-01	k: 7768	n:10000
KS ci ratio: 4.218414e-02	ci left: 4.534885e-01	ci right 4.731329e-01	k: 4633	n:10000
ELTD1   10000 perm   2 sec   (4341 perm/sec)   p_kst 4.633000e-01   p_cons 7.768000e-01   p_joint 6.820000e-01

Outputting figure to mutsig2_images.part000000000056/ELTD1.18_2133_10000_0.4633_0.7768_0.682.png
                gene_name: ELTD1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 2 percent done.
EMR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.077061e-02	ci left: 6.090969e-01	ci right 6.282339e-01	k: 6187	n:10000
Cons ci ratio: 2.325932e-02	ci left: 7.308797e-01	ci right 7.481806e-01	k: 7396	n:10000
KS ci ratio: 5.223299e-02	ci left: 3.507829e-01	ci right 3.696986e-01	k: 3602	n:10000
EMR1   10000 perm   2 sec   (4853 perm/sec)   p_kst 3.602000e-01   p_cons 7.396000e-01   p_joint 6.187000e-01

Outputting figure to mutsig2_images.part000000000056/EMR1.11_2745_10000_0.3602_0.7396_0.6187.png
                gene_name: EMR1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 5 percent done.
ENAM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.154273e-01	ci left: 9.740099e-02	ci right 1.094311e-01	k: 1033	n:10000
Cons ci ratio: 2.296881e-01	ci left: 2.504340e-02	ci right 3.163520e-02	k: 282	n:10000
KS ci ratio: 6.080366e-02	ci left: 2.845862e-01	ci right 3.025342e-01	k: 2935	n:10000
ENAM   10000 perm   2 sec   (4295 perm/sec)   p_kst 2.935000e-01   p_cons 2.820000e-02   p_joint 1.033000e-01

Joint ci ratio: 1.015781e-01	ci left: 6.576929e-02	ci right 7.285655e-02	k: 1385	n:20000
Cons ci ratio: 1.613936e-01	ci left: 2.633371e-02	ci right 3.100466e-02	k: 572	n:20000
KS ci ratio: 4.277820e-02	ci left: 2.893307e-01	ci right 3.020287e-01	k: 5913	n:20000
ENAM   20000 perm   5 sec   (3784 perm/sec)   p_kst 2.956500e-01   p_cons 2.860000e-02   p_joint 6.925000e-02

Joint ci ratio: 9.294970e-02	ci left: 5.335946e-02	ci right 5.859361e-02	k: 1678	n:30000
Cons ci ratio: 1.342508e-01	ci left: 2.577538e-02	ci right 2.951685e-02	k: 828	n:30000
KS ci ratio: 3.473086e-02	ci left: 2.928606e-01	ci right 3.032452e-01	k: 8941	n:30000
ENAM   30000 perm   8 sec   (3748 perm/sec)   p_kst 2.980333e-01   p_cons 2.760000e-02   p_joint 5.593333e-02

Joint ci ratio: 8.183509e-02	ci left: 5.202564e-02	ci right 5.648934e-02	k: 2169	n:40000
Cons ci ratio: 1.160135e-01	ci left: 2.613788e-02	ci right 2.938116e-02	k: 1109	n:40000
KS ci ratio: 3.008801e-02	ci left: 2.934205e-01	ci right 3.024089e-01	k: 11916	n:40000
ENAM   40000 perm   11 sec   (3698 perm/sec)   p_kst 2.979000e-01   p_cons 2.772500e-02   p_joint 5.422500e-02

Joint ci ratio: 7.677041e-02	ci left: 4.765421e-02	ci right 5.147830e-02	k: 2477	n:50000
Cons ci ratio: 1.023889e-01	ci left: 2.701992e-02	ci right 2.995517e-02	k: 1423	n:50000
KS ci ratio: 2.681313e-02	ci left: 2.954272e-01	ci right 3.034761e-01	k: 14972	n:50000
ENAM   50000 perm   14 sec   (3627 perm/sec)   p_kst 2.994400e-01   p_cons 2.846000e-02   p_joint 4.954000e-02

Joint ci ratio: 7.343857e-02	ci left: 4.366606e-02	ci right 4.701143e-02	k: 2719	n:60000
Cons ci ratio: 9.365999e-02	ci left: 2.703650e-02	ci right 2.970938e-02	k: 1701	n:60000
KS ci ratio: 2.440672e-02	ci left: 2.969824e-01	ci right 3.043369e-01	k: 18039	n:60000
ENAM   60000 perm   17 sec   (3579 perm/sec)   p_kst 3.006500e-01   p_cons 2.835000e-02   p_joint 4.531667e-02

Outputting figure to mutsig2_images.part000000000056/ENAM.11_3461_60000_0.30065_0.02835_0.045317.png
                gene_name: ENAM
               theta_stop: 0.094 
                    nperm: 60000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.028 
      ci_cons_bounds_left: 0.027 
     ci_cons_bounds_right: 0.030 
                  p_joint: 0.045 
     ci_joint_bounds_left: 0.044 
    ci_joint_bounds_right: 0.047 

Current progress: 7 percent done.
EIF4G1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.824099e-02	ci left: 2.395602e-01	ci right 2.565868e-01	k: 2480	n:10000
Cons ci ratio: 1.206707e-02	ci left: 9.078193e-01	ci right 9.189385e-01	k: 9135	n:10000
KS ci ratio: 9.117616e-02	ci left: 1.488410e-01	ci right 1.631600e-01	k: 1559	n:10000
EIF4G1   10000 perm   2 sec   (4636 perm/sec)   p_kst 1.559000e-01   p_cons 9.135000e-01   p_joint 2.480000e-01

Outputting figure to mutsig2_images.part000000000056/EIF4G1.10_4924_10000_0.1559_0.9135_0.248.png
                gene_name: EIF4G1
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 9 percent done.
EML5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.538873e-02	ci left: 5.410874e-01	ci right 5.606829e-01	k: 5509	n:10000
Cons ci ratio: 2.098245e-02	ci left: 7.690153e-01	ci right 7.854229e-01	k: 7773	n:10000
KS ci ratio: 5.058591e-02	ci left: 3.655984e-01	ci right 3.846744e-01	k: 3751	n:10000
EML5   10000 perm   2 sec   (4040 perm/sec)   p_kst 3.751000e-01   p_cons 7.773000e-01   p_joint 5.509000e-01

Outputting figure to mutsig2_images.part000000000056/EML5.8_6106_10000_0.3751_0.7773_0.5509.png
                gene_name: EML5
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 12 percent done.
EMR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.935912e-02	ci left: 6.311057e-01	ci right 6.500123e-01	k: 6406	n:10000
Cons ci ratio: 4.415312e-02	ci left: 4.309378e-01	ci right 4.504967e-01	k: 4407	n:10000
KS ci ratio: 3.305359e-02	ci left: 5.746674e-01	ci right 5.940834e-01	k: 5844	n:10000
EMR3   10000 perm   2 sec   (5867 perm/sec)   p_kst 5.844000e-01   p_cons 4.407000e-01   p_joint 6.406000e-01

Outputting figure to mutsig2_images.part000000000056/EMR3.5_2023_10000_0.5844_0.4407_0.6406.png
                gene_name: EMR3
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 14 percent done.
ENGASE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.288571e-01	ci left: 7.921726e-02	ci right 9.022608e-02	k: 846	n:10000
Cons ci ratio: 2.089368e-01	ci left: 3.043932e-02	ci right 3.763545e-02	k: 339	n:10000
KS ci ratio: 6.160471e-02	ci left: 2.792365e-01	ci right 2.970871e-01	k: 2881	n:10000
ENGASE   10000 perm   2 sec   (5332 perm/sec)   p_kst 2.881000e-01   p_cons 3.390000e-02   p_joint 8.460000e-02

Joint ci ratio: 9.333221e-02	ci left: 7.725487e-02	ci right 8.486745e-02	k: 1620	n:20000
Cons ci ratio: 1.495754e-01	ci left: 3.071190e-02	ci right 3.572501e-02	k: 663	n:20000
KS ci ratio: 4.295344e-02	ci left: 2.876416e-01	ci right 3.003184e-01	k: 5879	n:20000
ENGASE   20000 perm   4 sec   (4789 perm/sec)   p_kst 2.939500e-01   p_cons 3.315000e-02   p_joint 8.100000e-02

Joint ci ratio: 6.269075e-02	ci left: 1.116737e-01	ci right 1.189343e-01	k: 3458	n:30000
Cons ci ratio: 1.230907e-01	ci left: 3.068382e-02	ci right 3.474067e-02	k: 980	n:30000
KS ci ratio: 3.507983e-02	ci left: 2.887154e-01	ci right 2.990578e-01	k: 8816	n:30000
ENGASE   30000 perm   7 sec   (4519 perm/sec)   p_kst 2.938667e-01   p_cons 3.266667e-02   p_joint 1.152667e-01

Joint ci ratio: 6.481798e-02	ci left: 8.105311e-02	ci right 8.650749e-02	k: 3350	n:40000
Cons ci ratio: 1.096715e-01	ci left: 2.925013e-02	ci right 3.266841e-02	k: 1237	n:40000
KS ci ratio: 2.968654e-02	ci left: 2.990460e-01	ci right 3.080825e-01	k: 12142	n:40000
ENGASE   40000 perm   9 sec   (4375 perm/sec)   p_kst 3.035500e-01   p_cons 3.092500e-02   p_joint 8.375000e-02

Joint ci ratio: 5.399486e-02	ci left: 9.277934e-02	ci right 9.794775e-02	k: 4767	n:50000
Cons ci ratio: 9.794653e-02	ci left: 2.951763e-02	ci right 3.257713e-02	k: 1551	n:50000
KS ci ratio: 2.667826e-02	ci left: 2.975389e-01	ci right 3.056041e-01	k: 15078	n:50000
ENGASE   50000 perm   12 sec   (4298 perm/sec)   p_kst 3.015600e-01   p_cons 3.102000e-02   p_joint 9.534000e-02

Outputting figure to mutsig2_images.part000000000056/ENGASE.5_2288_50000_0.30156_0.03102_0.09534.png
                gene_name: ENGASE
               theta_stop: 0.098 
                    nperm: 50000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.031 
      ci_cons_bounds_left: 0.030 
     ci_cons_bounds_right: 0.033 
                  p_joint: 0.095 
     ci_joint_bounds_left: 0.093 
    ci_joint_bounds_right: 0.098 

Current progress: 16 percent done.
EIF4ENIF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.071583e-02	ci left: 2.851807e-01	ci right 3.031394e-01	k: 2941	n:10000
KS ci ratio: 1.892472e-02	ci left: 8.031864e-01	ci right 8.186320e-01	k: 8110	n:10000
EIF4ENIF1   10000 perm   2 sec   (4700 perm/sec)   p_kst 8.110000e-01   p_cons 2.941000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000056/EIF4ENIF1.4_3033_10000_0.811_0.2941_1.png
                gene_name: EIF4ENIF1
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 19 percent done.
EIF4G3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.862612e-02	ci left: 4.974503e-01	ci right 5.171454e-01	k: 5073	n:10000
Cons ci ratio: 5.668679e-02	ci left: 3.142343e-01	ci right 3.326686e-01	k: 3234	n:10000
KS ci ratio: 6.183069e-02	ci left: 2.777507e-01	ci right 2.955737e-01	k: 2866	n:10000
EIF4G3   10000 perm   3 sec   (3455 perm/sec)   p_kst 2.866000e-01   p_cons 3.234000e-01   p_joint 5.073000e-01

Outputting figure to mutsig2_images.part000000000056/EIF4G3.4_4878_10000_0.2866_0.3234_0.5073.png
                gene_name: EIF4G3
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 21 percent done.
ELFN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.749028e-02	ci left: 8.265603e-01	ci right 8.412446e-01	k: 8340	n:10000
Cons ci ratio: 4.841319e-02	ci left: 3.862964e-01	ci right 4.055643e-01	k: 3959	n:10000
KS ci ratio: 8.030831e-03	ci left: 9.557639e-01	ci right 9.635655e-01	k: 9598	n:10000
ELFN2   10000 perm   2 sec   (5552 perm/sec)   p_kst 9.598000e-01   p_cons 3.959000e-01   p_joint 8.340000e-01

Outputting figure to mutsig2_images.part000000000056/ELFN2.4_2467_10000_0.9598_0.3959_0.834.png
                gene_name: ELFN2
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 23 percent done.
ELL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.037220e-01	ci left: 3.205417e-02	ci right 3.941949e-02	k: 356	n:10000
Cons ci ratio: 3.421012e-02	ci left: 5.578216e-01	ci right 5.773390e-01	k: 5676	n:10000
KS ci ratio: 5.766130e-01	ci left: 3.284168e-03	ci right 6.016771e-03	k: 45	n:10000
ELL2   10000 perm   2 sec   (5659 perm/sec)   p_kst 4.500000e-03   p_cons 5.676000e-01   p_joint 3.560000e-02

Joint ci ratio: 2.021709e-01	ci left: 1.658271e-02	ci right 2.035914e-02	k: 368	n:20000
Cons ci ratio: 2.413260e-02	ci left: 5.619018e-01	ci right 5.756782e-01	k: 11376	n:20000
KS ci ratio: 4.169427e-01	ci left: 3.485595e-03	ci right 5.362982e-03	k: 87	n:20000
ELL2   20000 perm   4 sec   (5124 perm/sec)   p_kst 4.350000e-03   p_cons 5.688000e-01   p_joint 1.840000e-02

Joint ci ratio: 1.480533e-01	ci left: 2.114060e-02	ci right 2.455267e-02	k: 684	n:30000
Cons ci ratio: 1.961236e-02	ci left: 5.654762e-01	ci right 5.767100e-01	k: 17133	n:30000
KS ci ratio: 3.378737e-01	ci left: 3.713216e-03	ci right 5.251843e-03	k: 133	n:30000
ELL2   30000 perm   6 sec   (4902 perm/sec)   p_kst 4.433333e-03   p_cons 5.711000e-01   p_joint 2.280000e-02

Joint ci ratio: 1.158525e-01	ci left: 2.621077e-02	ci right 2.945827e-02	k: 1112	n:40000
Cons ci ratio: 1.706311e-02	ci left: 5.639794e-01	ci right 5.737106e-01	k: 22754	n:40000
KS ci ratio: 2.891075e-01	ci left: 3.914153e-03	ci right 5.259327e-03	k: 182	n:40000
ELL2   40000 perm   9 sec   (4658 perm/sec)   p_kst 4.550000e-03   p_cons 5.688500e-01   p_joint 2.780000e-02

Joint ci ratio: 8.991594e-02	ci left: 3.497104e-02	ci right 3.828304e-02	k: 1830	n:50000
Cons ci ratio: 1.522108e-02	ci left: 5.658068e-01	ci right 5.745051e-01	k: 28508	n:50000
KS ci ratio: 2.584444e-01	ci left: 3.988372e-03	ci right 5.190261e-03	k: 228	n:50000
ELL2   50000 perm   11 sec   (4519 perm/sec)   p_kst 4.560000e-03   p_cons 5.701600e-01   p_joint 3.660000e-02

Joint ci ratio: 8.591365e-02	ci left: 3.209081e-02	ci right 3.498787e-02	k: 2011	n:60000
Cons ci ratio: 1.389948e-02	ci left: 5.660270e-01	ci right 5.739662e-01	k: 34200	n:60000
KS ci ratio: 2.362726e-01	ci left: 4.027245e-03	ci right 5.121526e-03	k: 273	n:60000
ELL2   60000 perm   13 sec   (4447 perm/sec)   p_kst 4.550000e-03   p_cons 5.700000e-01   p_joint 3.351667e-02

Joint ci ratio: 8.196229e-02	ci left: 3.034441e-02	ci right 3.295175e-02	k: 2214	n:70000
Cons ci ratio: 1.283660e-02	ci left: 5.675380e-01	ci right 5.748846e-01	k: 39985	n:70000
KS ci ratio: 2.166010e-01	ci left: 4.152744e-03	ci right 5.174697e-03	k: 325	n:70000
ELL2   70000 perm   16 sec   (4376 perm/sec)   p_kst 4.642857e-03   p_cons 5.712143e-01   p_joint 3.162857e-02

Joint ci ratio: 8.270742e-02	ci left: 2.618171e-02	ci right 2.845274e-02	k: 2184	n:80000
Cons ci ratio: 1.201221e-02	ci left: 5.675866e-01	ci right 5.744582e-01	k: 45682	n:80000
KS ci ratio: 2.070037e-01	ci left: 4.000571e-03	ci right 4.935925e-03	k: 356	n:80000
ELL2   80000 perm   19 sec   (4304 perm/sec)   p_kst 4.450000e-03   p_cons 5.710250e-01   p_joint 2.730000e-02

Joint ci ratio: 7.914567e-02	ci left: 2.548218e-02	ci right 2.759293e-02	k: 2387	n:90000
Cons ci ratio: 1.133018e-02	ci left: 5.675696e-01	ci right 5.740480e-01	k: 51373	n:90000
KS ci ratio: 1.955629e-01	ci left: 4.009778e-03	ci right 4.889300e-03	k: 399	n:90000
ELL2   90000 perm   22 sec   (4059 perm/sec)   p_kst 4.433333e-03   p_cons 5.708111e-01   p_joint 2.652222e-02

Joint ci ratio: 8.031064e-02	ci left: 2.233464e-02	ci right 2.421315e-02	k: 2326	n:100000
Cons ci ratio: 1.075691e-02	ci left: 5.673649e-01	ci right 5.735110e-01	k: 57044	n:100000
KS ci ratio: 1.875394e-01	ci left: 3.942007e-03	ci right 4.767149e-03	k: 434	n:100000
ELL2   100000 perm   25 sec   (3956 perm/sec)   p_kst 4.340000e-03   p_cons 5.704400e-01   p_joint 2.326000e-02

Joint ci ratio: 7.759897e-02	ci left: 2.179219e-02	ci right 2.356038e-02	k: 2493	n:110000
Cons ci ratio: 1.027049e-02	ci left: 5.668314e-01	ci right 5.726922e-01	k: 62674	n:110000
KS ci ratio: 1.800443e-01	ci left: 3.904528e-03	ci right 4.685600e-03	k: 471	n:110000
ELL2   110000 perm   29 sec   (3793 perm/sec)   p_kst 4.281818e-03   p_cons 5.697636e-01   p_joint 2.266364e-02

Joint ci ratio: 8.006740e-02	ci left: 1.879864e-02	ci right 2.037470e-02	k: 2349	n:120000
Cons ci ratio: 9.825507e-03	ci left: 5.673432e-01	ci right 5.729534e-01	k: 68418	n:120000
KS ci ratio: 1.740696e-01	ci left: 3.841954e-03	ci right 4.582322e-03	k: 504	n:120000
ELL2   120000 perm   33 sec   (3667 perm/sec)   p_kst 4.200000e-03   p_cons 5.701500e-01   p_joint 1.957500e-02

Joint ci ratio: 8.499147e-02	ci left: 1.541526e-02	ci right 1.679106e-02	k: 2092	n:130000
Cons ci ratio: 9.449015e-03	ci left: 5.669878e-01	ci right 5.723783e-01	k: 74059	n:130000
KS ci ratio: 1.674072e-01	ci left: 3.848330e-03	ci right 4.558681e-03	k: 545	n:130000
ELL2   130000 perm   36 sec   (3640 perm/sec)   p_kst 4.192308e-03   p_cons 5.696846e-01   p_joint 1.609231e-02

Joint ci ratio: 8.264837e-02	ci left: 1.516026e-02	ci right 1.647419e-02	k: 2213	n:140000
Cons ci ratio: 9.107539e-03	ci left: 5.669657e-01	ci right 5.721600e-01	k: 79739	n:140000
KS ci ratio: 1.592900e-01	ci left: 3.963975e-03	ci right 4.656802e-03	k: 602	n:140000
ELL2   140000 perm   39 sec   (3610 perm/sec)   p_kst 4.300000e-03   p_cons 5.695643e-01   p_joint 1.580714e-02

Joint ci ratio: 8.274956e-02	ci left: 1.412967e-02	ci right 1.535585e-02	k: 2210	n:150000
Cons ci ratio: 8.812566e-03	ci left: 5.662825e-01	ci right 5.713016e-01	k: 85319	n:150000
KS ci ratio: 1.542575e-01	ci left: 3.955915e-03	ci right 4.623470e-03	k: 642	n:150000
ELL2   150000 perm   42 sec   (3579 perm/sec)   p_kst 4.280000e-03   p_cons 5.687933e-01   p_joint 1.473333e-02

Joint ci ratio: 8.516304e-02	ci left: 1.251186e-02	ci right 1.363088e-02	k: 2090	n:160000
Cons ci ratio: 8.525555e-03	ci left: 5.667755e-01	ci right 5.716345e-01	k: 91073	n:160000
KS ci ratio: 1.475200e-01	ci left: 4.069535e-03	ci right 4.723624e-03	k: 702	n:160000
ELL2   160000 perm   45 sec   (3546 perm/sec)   p_kst 4.387500e-03   p_cons 5.692063e-01   p_joint 1.306250e-02

Joint ci ratio: 8.322374e-02	ci left: 1.234592e-02	ci right 1.342373e-02	k: 2189	n:170000
Cons ci ratio: 8.265260e-03	ci left: 5.671892e-01	ci right 5.719025e-01	k: 96823	n:170000
KS ci ratio: 1.434958e-01	ci left: 4.056877e-03	ci right 4.689621e-03	k: 742	n:170000
ELL2   170000 perm   48 sec   (3512 perm/sec)   p_kst 4.364706e-03   p_cons 5.695471e-01   p_joint 1.287647e-02

Joint ci ratio: 7.713693e-02	ci left: 1.359853e-02	ci right 1.469498e-02	k: 2545	n:180000
Cons ci ratio: 8.036076e-03	ci left: 5.670308e-01	ci right 5.716114e-01	k: 102478	n:180000
KS ci ratio: 1.385454e-01	ci left: 4.120921e-03	ci right 4.739651e-03	k: 796	n:180000
ELL2   180000 perm   52 sec   (3475 perm/sec)   p_kst 4.422222e-03   p_cons 5.693222e-01   p_joint 1.413889e-02

Joint ci ratio: 7.102569e-02	ci left: 1.521819e-02	ci right 1.634402e-02	k: 2997	n:190000
Cons ci ratio: 7.824954e-03	ci left: 5.668907e-01	ci right 5.713493e-01	k: 108133	n:190000
KS ci ratio: 1.343919e-01	ci left: 4.158210e-03	ci right 4.762326e-03	k: 846	n:190000
ELL2   190000 perm   55 sec   (3438 perm/sec)   p_kst 4.452632e-03   p_cons 5.691211e-01   p_joint 1.577368e-02

Joint ci ratio: 7.113852e-02	ci left: 1.442270e-02	ci right 1.549143e-02	k: 2990	n:200000
Cons ci ratio: 7.619457e-03	ci left: 5.674215e-01	ci right 5.717665e-01	k: 113919	n:200000
KS ci ratio: 1.302993e-01	ci left: 4.211369e-03	ci right 4.803134e-03	k: 900	n:200000
ELL2   200000 perm   59 sec   (3402 perm/sec)   p_kst 4.500000e-03   p_cons 5.695950e-01   p_joint 1.495000e-02

Joint ci ratio: 6.948645e-02	ci left: 1.440956e-02	ci right 1.545152e-02	k: 3134	n:210000
Cons ci ratio: 7.435032e-03	ci left: 5.675266e-01	ci right 5.717667e-01	k: 119626	n:210000
KS ci ratio: 1.269604e-01	ci left: 4.232047e-03	ci right 4.810332e-03	k: 948	n:210000
ELL2   210000 perm   62 sec   (3366 perm/sec)   p_kst 4.514286e-03   p_cons 5.696476e-01   p_joint 1.492381e-02

Joint ci ratio: 7.011408e-02	ci left: 1.351765e-02	ci right 1.450430e-02	k: 3081	n:220000
Cons ci ratio: 7.262776e-03	ci left: 5.676643e-01	ci right 5.718066e-01	k: 125342	n:220000
KS ci ratio: 1.238657e-01	ci left: 4.251021e-03	ci right 4.816701e-03	k: 996	n:220000
ELL2   220000 perm   66 sec   (3330 perm/sec)   p_kst 4.527273e-03   p_cons 5.697364e-01   p_joint 1.400455e-02

Joint ci ratio: 6.995193e-02	ci left: 1.299815e-02	ci right 1.394460e-02	k: 3097	n:230000
Cons ci ratio: 7.101145e-03	ci left: 5.678475e-01	ci right 5.718985e-01	k: 131071	n:230000
KS ci ratio: 1.209868e-01	ci left: 4.268501e-03	ci right 4.822360e-03	k: 1044	n:230000
ELL2   230000 perm   70 sec   (3295 perm/sec)   p_kst 4.539130e-03   p_cons 5.698739e-01   p_joint 1.346522e-02

Joint ci ratio: 6.866986e-02	ci left: 1.293560e-02	ci right 1.385954e-02	k: 3214	n:240000
Cons ci ratio: 6.956049e-03	ci left: 5.675787e-01	ci right 5.715447e-01	k: 136695	n:240000
KS ci ratio: 1.187371e-01	ci left: 4.252314e-03	ci right 4.793093e-03	k: 1084	n:240000
ELL2   240000 perm   74 sec   (3258 perm/sec)   p_kst 4.516667e-03   p_cons 5.695625e-01   p_joint 1.339167e-02

Joint ci ratio: 6.854825e-02	ci left: 1.246918e-02	ci right 1.335816e-02	k: 3227	n:250000
Cons ci ratio: 6.816878e-03	ci left: 5.675202e-01	ci right 5.714061e-01	k: 142366	n:250000
KS ci ratio: 1.163489e-01	ci left: 4.256930e-03	ci right 4.786658e-03	k: 1129	n:250000
ELL2   250000 perm   78 sec   (3223 perm/sec)   p_kst 4.516000e-03   p_cons 5.694640e-01   p_joint 1.290800e-02

Joint ci ratio: 6.591756e-02	ci left: 1.297668e-02	ci right 1.386498e-02	k: 3488	n:260000
Cons ci ratio: 6.683800e-03	ci left: 5.676095e-01	ci right 5.714198e-01	k: 148074	n:260000
KS ci ratio: 1.148379e-01	ci left: 4.205243e-03	ci right 4.721283e-03	k: 1159	n:260000
ELL2   260000 perm   82 sec   (3188 perm/sec)   p_kst 4.457692e-03   p_cons 5.695154e-01   p_joint 1.341538e-02

Joint ci ratio: 6.475052e-02	ci left: 1.295874e-02	ci right 1.382953e-02	k: 3615	n:270000
Cons ci ratio: 6.561097e-03	ci left: 5.674778e-01	ci right 5.712170e-01	k: 153724	n:270000
KS ci ratio: 1.120675e-01	ci left: 4.258219e-03	ci right 4.767321e-03	k: 1217	n:270000
ELL2   270000 perm   86 sec   (3156 perm/sec)   p_kst 4.507407e-03   p_cons 5.693481e-01   p_joint 1.338889e-02

Joint ci ratio: 6.546676e-02	ci left: 1.222877e-02	ci right 1.305993e-02	k: 3539	n:280000
Cons ci ratio: 6.443784e-03	ci left: 5.674419e-01	ci right 5.711138e-01	k: 159398	n:280000
KS ci ratio: 1.100530e-01	ci left: 4.262390e-03	ci right 4.762236e-03	k: 1262	n:280000
ELL2   280000 perm   90 sec   (3125 perm/sec)   p_kst 4.507143e-03   p_cons 5.692786e-01   p_joint 1.263929e-02

Joint ci ratio: 6.689183e-02	ci left: 1.131179e-02	ci right 1.209801e-02	k: 3393	n:290000
Cons ci ratio: 6.333972e-03	ci left: 5.672987e-01	ci right 5.709068e-01	k: 165040	n:290000
KS ci ratio: 1.078127e-01	ci left: 4.293194e-03	ci right 4.785753e-03	k: 1315	n:290000
ELL2   290000 perm   94 sec   (3092 perm/sec)   p_kst 4.534483e-03   p_cons 5.691034e-01   p_joint 1.170000e-02

Joint ci ratio: 7.067672e-02	ci left: 9.791118e-03	ci right 1.051173e-02	k: 3044	n:300000
Cons ci ratio: 6.227344e-03	ci left: 5.673423e-01	ci right 5.708897e-01	k: 170735	n:300000
KS ci ratio: 1.105542e-01	ci left: 3.942540e-03	ci right 4.407119e-03	k: 1251	n:300000
ELL2   300000 perm   98 sec   (3060 perm/sec)   p_kst 4.170000e-03   p_cons 5.691167e-01   p_joint 1.014667e-02

Joint ci ratio: 6.965615e-02	ci left: 9.760498e-03	ci right 1.046806e-02	k: 3134	n:310000
Cons ci ratio: 6.123791e-03	ci left: 5.675546e-01	ci right 5.710441e-01	k: 176483	n:310000
KS ci ratio: 1.086609e-01	ci left: 3.953407e-03	ci right 4.410777e-03	k: 1295	n:310000
ELL2   310000 perm   102 sec   (3029 perm/sec)   p_kst 4.177419e-03   p_cons 5.693000e-01   p_joint 1.010968e-02

Joint ci ratio: 6.852843e-02	ci left: 9.774870e-03	ci right 1.047154e-02	k: 3238	n:320000
Cons ci ratio: 6.030268e-03	ci left: 5.673445e-01	ci right 5.707792e-01	k: 182100	n:320000
KS ci ratio: 1.068616e-01	ci left: 3.963658e-03	ci right 4.414144e-03	k: 1339	n:320000
ELL2   320000 perm   107 sec   (2997 perm/sec)   p_kst 4.184375e-03   p_cons 5.690625e-01   p_joint 1.011875e-02

Joint ci ratio: 6.762770e-02	ci left: 9.737804e-03	ci right 1.042236e-02	k: 3325	n:330000
Cons ci ratio: 5.939028e-03	ci left: 5.673022e-01	ci right 5.706845e-01	k: 187768	n:330000
KS ci ratio: 1.056097e-01	ci left: 3.937937e-03	ci right 4.379931e-03	k: 1371	n:330000
ELL2   330000 perm   111 sec   (2966 perm/sec)   p_kst 4.154545e-03   p_cons 5.689939e-01   p_joint 1.007576e-02

Joint ci ratio: 6.965391e-02	ci left: 8.907812e-03	ci right 9.553535e-03	k: 3137	n:340000
Cons ci ratio: 5.852439e-03	ci left: 5.672098e-01	ci right 5.705420e-01	k: 193418	n:340000
KS ci ratio: 1.043261e-01	ci left: 3.919488e-03	ci right 4.353736e-03	k: 1405	n:340000
ELL2   340000 perm   116 sec   (2936 perm/sec)   p_kst 4.132353e-03   p_cons 5.688765e-01   p_joint 9.226471e-03

Joint ci ratio: 6.136210e-02	ci left: 1.117191e-02	ci right 1.188193e-02	k: 4033	n:350000
Cons ci ratio: 5.772018e-03	ci left: 5.669115e-01	ci right 5.701960e-01	k: 198994	n:350000
KS ci ratio: 1.030164e-01	ci left: 3.907692e-03	ci right 4.334868e-03	k: 1441	n:350000
ELL2   350000 perm   120 sec   (2906 perm/sec)   p_kst 4.117143e-03   p_cons 5.685543e-01   p_joint 1.152286e-02

Joint ci ratio: 6.389454e-02	ci left: 1.001649e-02	ci right 1.068032e-02	k: 3724	n:360000
Cons ci ratio: 5.690885e-03	ci left: 5.669691e-01	ci right 5.702076e-01	k: 204692	n:360000
KS ci ratio: 1.015480e-01	ci left: 3.912827e-03	ci right 4.334105e-03	k: 1483	n:360000
ELL2   360000 perm   125 sec   (2876 perm/sec)   p_kst 4.119444e-03   p_cons 5.685889e-01   p_joint 1.034444e-02

Joint ci ratio: 6.911599e-02	ci left: 8.320917e-03	ci right 8.919249e-03	k: 3188	n:370000
Cons ci ratio: 5.612957e-03	ci left: 5.670347e-01	ci right 5.702291e-01	k: 210394	n:370000
KS ci ratio: 1.002397e-01	ci left: 3.909821e-03	ci right 4.325032e-03	k: 1522	n:370000
ELL2   370000 perm   130 sec   (2848 perm/sec)   p_kst 4.113514e-03   p_cons 5.686324e-01   p_joint 8.616216e-03

Joint ci ratio: 7.648080e-02	ci left: 6.603112e-03	ci right 7.130766e-03	k: 2608	n:380000
Cons ci ratio: 5.395177e-03	ci left: 5.798848e-01	ci right 5.830245e-01	k: 220953	n:380000
KS ci ratio: 9.914016e-02	ci left: 3.894172e-03	ci right 4.302921e-03	k: 1556	n:380000
ELL2   380000 perm   135 sec   (2813 perm/sec)   p_kst 4.094737e-03   p_cons 5.814553e-01   p_joint 6.863158e-03

Outputting figure to mutsig2_images.part000000000056/ELL2.4_1971_380000_0.0040947_0.58146_0.0068632.png
                gene_name: ELL2
               theta_stop: 0.099 
                    nperm: 380000 
                     p_ks: 0.0041 
        ci_ks_bounds_left: 0.0039 
       ci_ks_bounds_right: 0.0043 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.0069 
     ci_joint_bounds_left: 0.0066 
    ci_joint_bounds_right: 0.0071 

Current progress: 26 percent done.
ELMO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.336215e-02	ci left: 3.410438e-01	ci right 3.598434e-01	k: 3504	n:10000
Cons ci ratio: 3.325128e-02	ci left: 5.717587e-01	ci right 5.911938e-01	k: 5815	n:10000
KS ci ratio: 7.202812e-02	ci left: 2.202021e-01	ci right 2.367564e-01	k: 2284	n:10000
ELMO1   10000 perm   2 sec   (5464 perm/sec)   p_kst 2.284000e-01   p_cons 5.815000e-01   p_joint 3.504000e-01

Outputting figure to mutsig2_images.part000000000056/ELMO1.4_2268_10000_0.2284_0.5815_0.3504.png
                gene_name: ELMO1
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 28 percent done.
EMILIN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.115161e-02	ci left: 3.604268e-01	ci right 3.794491e-01	k: 3699	n:10000
Cons ci ratio: 7.628204e-02	ci left: 2.008694e-01	ci right 2.169006e-01	k: 2088	n:10000
KS ci ratio: 5.477448e-02	ci left: 3.293229e-01	ci right 3.479712e-01	k: 3386	n:10000
EMILIN1   10000 perm   2 sec   (4685 perm/sec)   p_kst 3.386000e-01   p_cons 2.088000e-01   p_joint 3.699000e-01

Outputting figure to mutsig2_images.part000000000056/EMILIN1.4_3083_10000_0.3386_0.2088_0.3699.png
                gene_name: EMILIN1
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 30 percent done.
EMR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.415481e-01	ci left: 1.078106e-02	ci right 1.530921e-02	k: 129	n:10000
Cons ci ratio: 5.285046e-02	ci left: 3.454159e-01	ci right 3.642687e-01	k: 3548	n:10000
KS ci ratio: 1.011330e+00	ci left: 7.655977e-04	ci right 2.347848e-03	k: 14	n:10000
EMR2   10000 perm   2 sec   (5416 perm/sec)   p_kst 1.400000e-03   p_cons 3.548000e-01   p_joint 1.290000e-02

Joint ci ratio: 3.374918e-01	ci left: 5.570785e-03	ci right 7.876145e-03	k: 133	n:20000
Cons ci ratio: 3.695422e-02	ci left: 3.533434e-01	ci right 3.666973e-01	k: 7200	n:20000
KS ci ratio: 6.923928e-01	ci left: 1.053385e-03	ci right 2.199386e-03	k: 31	n:20000
EMR2   20000 perm   4 sec   (4890 perm/sec)   p_kst 1.550000e-03   p_cons 3.600000e-01   p_joint 6.650000e-03

Joint ci ratio: 3.680613e-01	ci left: 3.074978e-03	ci right 4.490465e-03	k: 112	n:30000
Cons ci ratio: 3.024840e-02	ci left: 3.534360e-01	ci right 3.643246e-01	k: 10766	n:30000
KS ci ratio: 5.713332e-01	ci left: 1.122805e-03	ci right 2.044728e-03	k: 46	n:30000
EMR2   30000 perm   6 sec   (4673 perm/sec)   p_kst 1.533333e-03   p_cons 3.588667e-01   p_joint 3.733333e-03

Joint ci ratio: 4.174083e-01	ci left: 1.742441e-03	ci right 2.682173e-03	k: 87	n:40000
Cons ci ratio: 2.618876e-02	ci left: 3.542968e-01	ci right 3.637236e-01	k: 14360	n:40000
KS ci ratio: 5.282026e-01	ci left: 1.014319e-03	ci right 1.761095e-03	k: 54	n:40000
EMR2   40000 perm   9 sec   (4536 perm/sec)   p_kst 1.350000e-03   p_cons 3.590000e-01   p_joint 2.175000e-03

Joint ci ratio: 1.920904e-01	ci left: 7.466281e-03	ci right 9.071597e-03	k: 412	n:50000
Cons ci ratio: 2.343742e-02	ci left: 3.545342e-01	ci right 3.629622e-01	k: 17937	n:50000
KS ci ratio: 4.648834e-01	ci left: 1.091526e-03	ci right 1.768490e-03	k: 70	n:50000
EMR2   50000 perm   11 sec   (4428 perm/sec)   p_kst 1.400000e-03   p_cons 3.587400e-01   p_joint 8.240000e-03

Joint ci ratio: 1.466594e-01	ci left: 1.090311e-02	ci right 1.264459e-02	k: 705	n:60000
Cons ci ratio: 2.138031e-02	ci left: 3.552267e-01	ci right 3.629203e-01	k: 21544	n:60000
KS ci ratio: 4.299746e-01	ci left: 1.087094e-03	ci right 1.696114e-03	k: 82	n:60000
EMR2   60000 perm   14 sec   (4331 perm/sec)   p_kst 1.366667e-03   p_cons 3.590667e-01   p_joint 1.175000e-02

Joint ci ratio: 1.381475e-01	ci left: 1.058533e-02	ci right 1.216984e-02	k: 795	n:70000
Cons ci ratio: 1.858946e-02	ci left: 3.848440e-01	ci right 3.920795e-01	k: 27192	n:70000
KS ci ratio: 4.084167e-01	ci left: 1.046804e-03	ci right 1.595876e-03	k: 91	n:70000
EMR2   70000 perm   16 sec   (4248 perm/sec)   p_kst 1.300000e-03   p_cons 3.884571e-01   p_joint 1.135714e-02

Joint ci ratio: 1.463558e-01	ci left: 8.236702e-03	ci right 9.549285e-03	k: 710	n:80000
Cons ci ratio: 1.741665e-02	ci left: 3.843216e-01	ci right 3.910865e-01	k: 31016	n:80000
KS ci ratio: 3.859979e-01	ci left: 1.039726e-03	ci right 1.547552e-03	k: 102	n:80000
EMR2   80000 perm   19 sec   (4171 perm/sec)   p_kst 1.275000e-03   p_cons 3.877000e-01   p_joint 8.875000e-03

Joint ci ratio: 1.414971e-01	ci left: 7.856954e-03	ci right 9.063938e-03	k: 760	n:90000
Cons ci ratio: 1.642331e-02	ci left: 3.844373e-01	ci right 3.908144e-01	k: 34886	n:90000
KS ci ratio: 3.653062e-01	ci left: 1.044954e-03	ci right 1.521460e-03	k: 114	n:90000
EMR2   90000 perm   22 sec   (4100 perm/sec)   p_kst 1.266667e-03   p_cons 3.876222e-01   p_joint 8.444444e-03

Joint ci ratio: 1.497016e-01	ci left: 6.299991e-03	ci right 7.328928e-03	k: 680	n:100000
Cons ci ratio: 1.557538e-02	ci left: 3.847584e-01	ci right 3.908081e-01	k: 38778	n:100000
KS ci ratio: 3.518063e-01	ci left: 1.022351e-03	ci right 1.467390e-03	k: 123	n:100000
EMR2   100000 perm   25 sec   (4031 perm/sec)   p_kst 1.230000e-03   p_cons 3.877800e-01   p_joint 6.800000e-03

Joint ci ratio: 1.460191e-01	ci left: 6.033614e-03	ci right 6.992684e-03	k: 715	n:110000
Cons ci ratio: 1.485278e-02	ci left: 3.848283e-01	ci right 3.905958e-01	k: 42648	n:110000
KS ci ratio: 3.384286e-01	ci left: 1.012442e-03	ci right 1.432749e-03	k: 133	n:110000
EMR2   110000 perm   28 sec   (3966 perm/sec)   p_kst 1.209091e-03   p_cons 3.877091e-01   p_joint 6.500000e-03

Joint ci ratio: 1.681529e-01	ci left: 4.129159e-03	ci right 4.895090e-03	k: 540	n:120000
Cons ci ratio: 1.424324e-02	ci left: 3.841929e-01	ci right 3.897126e-01	k: 46434	n:120000
KS ci ratio: 3.253402e-01	ci left: 1.012103e-03	ci right 1.412629e-03	k: 144	n:120000
EMR2   120000 perm   31 sec   (3904 perm/sec)   p_kst 1.200000e-03   p_cons 3.869500e-01   p_joint 4.500000e-03

Joint ci ratio: 1.625458e-01	ci left: 4.091738e-03	ci right 4.822945e-03	k: 578	n:130000
Cons ci ratio: 1.367439e-02	ci left: 3.846507e-01	ci right 3.899544e-01	k: 50349	n:130000
KS ci ratio: 3.188185e-01	ci left: 9.766687e-04	ci right 1.353843e-03	k: 150	n:130000
EMR2   130000 perm   34 sec   (3846 perm/sec)   p_kst 1.153846e-03   p_cons 3.873000e-01   p_joint 4.446154e-03

Joint ci ratio: 1.704356e-01	ci left: 3.443410e-03	ci right 4.091695e-03	k: 526	n:140000
Cons ci ratio: 1.315896e-02	ci left: 3.853963e-01	ci right 3.905084e-01	k: 54313	n:140000
KS ci ratio: 3.136752e-01	ci left: 9.397836e-04	ci right 1.295684e-03	k: 155	n:140000
EMR2   140000 perm   37 sec   (3788 perm/sec)   p_kst 1.107143e-03   p_cons 3.879500e-01   p_joint 3.757143e-03

Joint ci ratio: 1.673007e-01	ci left: 3.341533e-03	ci right 3.957898e-03	k: 546	n:150000
Cons ci ratio: 1.271286e-02	ci left: 3.854796e-01	ci right 3.904181e-01	k: 58192	n:150000
KS ci ratio: 3.050027e-01	ci left: 9.324744e-04	ci right 1.273949e-03	k: 164	n:150000
EMR2   150000 perm   40 sec   (3732 perm/sec)   p_kst 1.093333e-03   p_cons 3.879467e-01   p_joint 3.640000e-03

Joint ci ratio: 1.614981e-01	ci left: 3.372408e-03	ci right 3.970799e-03	k: 586	n:160000
Cons ci ratio: 1.230424e-02	ci left: 3.857486e-01	ci right 3.905305e-01	k: 62102	n:160000
KS ci ratio: 2.961611e-01	ci left: 9.319826e-04	ci right 1.261526e-03	k: 174	n:160000
EMR2   160000 perm   43 sec   (3679 perm/sec)   p_kst 1.087500e-03   p_cons 3.881375e-01   p_joint 3.662500e-03

Joint ci ratio: 1.571432e-01	ci left: 3.360408e-03	ci right 3.939075e-03	k: 619	n:170000
Cons ci ratio: 1.193871e-02	ci left: 3.857472e-01	ci right 3.903860e-01	k: 65971	n:170000
KS ci ratio: 2.888290e-01	ci left: 9.262174e-04	ci right 1.244133e-03	k: 183	n:170000
EMR2   170000 perm   47 sec   (3630 perm/sec)   p_kst 1.076471e-03   p_cons 3.880647e-01   p_joint 3.641176e-03

Joint ci ratio: 1.552854e-01	ci left: 3.253780e-03	ci right 3.806844e-03	k: 634	n:180000
Cons ci ratio: 1.159253e-02	ci left: 3.862141e-01	ci right 3.907229e-01	k: 69924	n:180000
KS ci ratio: 2.827499e-01	ci left: 9.160194e-04	ci right 1.222637e-03	k: 191	n:180000
EMR2   180000 perm   50 sec   (3583 perm/sec)   p_kst 1.061111e-03   p_cons 3.884667e-01   p_joint 3.522222e-03

Joint ci ratio: 1.571735e-01	ci left: 3.006637e-03	ci right 3.524491e-03	k: 619	n:190000
Cons ci ratio: 1.128606e-02	ci left: 3.861602e-01	ci right 3.905484e-01	k: 73787	n:190000
KS ci ratio: 2.756629e-01	ci left: 9.167552e-04	ci right 1.214594e-03	k: 201	n:190000
EMR2   190000 perm   54 sec   (3536 perm/sec)   p_kst 1.057895e-03   p_cons 3.883526e-01   p_joint 3.257895e-03

Joint ci ratio: 1.543406e-01	ci left: 2.966818e-03	ci right 3.467752e-03	k: 642	n:200000
Cons ci ratio: 1.099688e-02	ci left: 3.863630e-01	ci right 3.906402e-01	k: 77700	n:200000
KS ci ratio: 2.716610e-01	ci left: 8.988579e-04	ci right 1.185920e-03	k: 207	n:200000
EMR2   200000 perm   57 sec   (3490 perm/sec)   p_kst 1.035000e-03   p_cons 3.885000e-01   p_joint 3.210000e-03

Joint ci ratio: 1.553247e-01	ci left: 2.788902e-03	ci right 3.263076e-03	k: 634	n:210000
Cons ci ratio: 1.072874e-02	ci left: 3.865525e-01	ci right 3.907268e-01	k: 81614	n:210000
KS ci ratio: 2.659688e-01	ci left: 8.960242e-04	ci right 1.175186e-03	k: 216	n:210000
EMR2   210000 perm   61 sec   (3441 perm/sec)   p_kst 1.028571e-03   p_cons 3.886381e-01   p_joint 3.019048e-03

Joint ci ratio: 1.572086e-01	ci left: 2.596597e-03	ci right 3.043934e-03	k: 619	n:220000
Cons ci ratio: 1.048653e-02	ci left: 3.863989e-01	ci right 3.904768e-01	k: 85456	n:220000
KS ci ratio: 2.566711e-01	ci left: 9.232624e-04	ci right 1.199246e-03	k: 232	n:220000
EMR2   220000 perm   65 sec   (3396 perm/sec)   p_kst 1.054545e-03   p_cons 3.884364e-01   p_joint 2.813636e-03

Joint ci ratio: 1.638428e-01	ci left: 2.279182e-03	ci right 2.690038e-03	k: 570	n:230000
Cons ci ratio: 1.025522e-02	ci left: 3.864812e-01	ci right 3.904694e-01	k: 89349	n:230000
KS ci ratio: 2.513347e-01	ci left: 9.238314e-04	ci right 1.193345e-03	k: 242	n:230000
EMR2   230000 perm   69 sec   (3351 perm/sec)   p_kst 1.052174e-03   p_cons 3.884739e-01   p_joint 2.478261e-03

Joint ci ratio: 1.611850e-01	ci left: 2.260161e-03	ci right 2.660339e-03	k: 589	n:240000
Cons ci ratio: 1.004210e-02	ci left: 3.863911e-01	ci right 3.902950e-01	k: 93202	n:240000
KS ci ratio: 2.463178e-01	ci left: 9.244072e-04	ci right 1.187881e-03	k: 252	n:240000
EMR2   240000 perm   73 sec   (3308 perm/sec)   p_kst 1.050000e-03   p_cons 3.883417e-01   p_joint 2.454167e-03

Joint ci ratio: 1.620209e-01	ci left: 2.146715e-03	ci right 2.528969e-03	k: 583	n:250000
Cons ci ratio: 9.846536e-03	ci left: 3.860772e-01	ci right 3.899014e-01	k: 96997	n:250000
KS ci ratio: 2.415899e-01	ci left: 9.249860e-04	ci right 1.182806e-03	k: 262	n:250000
EMR2   250000 perm   77 sec   (3266 perm/sec)   p_kst 1.048000e-03   p_cons 3.879880e-01   p_joint 2.332000e-03

Joint ci ratio: 1.594492e-01	ci left: 2.134286e-03	ci right 2.507716e-03	k: 602	n:260000
Cons ci ratio: 9.660949e-03	ci left: 3.858381e-01	ci right 3.895875e-01	k: 100805	n:260000
KS ci ratio: 2.388825e-01	ci left: 9.110967e-04	ci right 1.161779e-03	k: 268	n:260000
EMR2   260000 perm   81 sec   (3225 perm/sec)   p_kst 1.030769e-03   p_cons 3.877115e-01   p_joint 2.315385e-03

Joint ci ratio: 1.292296e-01	ci left: 3.176758e-03	ci right 3.619193e-03	k: 916	n:270000
Cons ci ratio: 9.480144e-03	ci left: 3.858838e-01	ci right 3.895631e-01	k: 104685	n:270000
KS ci ratio: 2.333102e-01	ci left: 9.226535e-04	ci right 1.169740e-03	k: 281	n:270000
EMR2   270000 perm   85 sec   (3184 perm/sec)   p_kst 1.040741e-03   p_cons 3.877222e-01   p_joint 3.392593e-03

Joint ci ratio: 1.279833e-01	ci left: 3.125515e-03	ci right 3.556295e-03	k: 934	n:280000
Cons ci ratio: 9.312066e-03	ci left: 3.857770e-01	ci right 3.893897e-01	k: 108523	n:280000
KS ci ratio: 2.304688e-01	ci left: 9.132487e-04	ci right 1.154414e-03	k: 288	n:280000
EMR2   280000 perm   89 sec   (3146 perm/sec)   p_kst 1.028571e-03   p_cons 3.875821e-01   p_joint 3.335714e-03

Joint ci ratio: 1.271072e-01	ci left: 3.061129e-03	ci right 3.479929e-03	k: 947	n:290000
Cons ci ratio: 9.148699e-03	ci left: 3.858813e-01	ci right 3.894313e-01	k: 112420	n:290000
KS ci ratio: 2.292847e-01	ci left: 8.915053e-04	ci right 1.125548e-03	k: 291	n:290000
EMR2   290000 perm   93 sec   (3108 perm/sec)   p_kst 1.003448e-03   p_cons 3.876552e-01   p_joint 3.265517e-03

Joint ci ratio: 1.263147e-01	ci left: 2.997817e-03	ci right 3.405207e-03	k: 959	n:300000
Cons ci ratio: 8.998314e-03	ci left: 3.857328e-01	ci right 3.892227e-01	k: 116243	n:300000
KS ci ratio: 2.254567e-01	ci left: 8.932235e-04	ci right 1.123258e-03	k: 301	n:300000
EMR2   300000 perm   98 sec   (3069 perm/sec)   p_kst 1.003333e-03   p_cons 3.874767e-01   p_joint 3.196667e-03

Joint ci ratio: 1.243235e-01	ci left: 2.997978e-03	ci right 3.398495e-03	k: 990	n:310000
Cons ci ratio: 8.852760e-03	ci left: 3.857200e-01	ci right 3.891531e-01	k: 120105	n:310000
KS ci ratio: 2.218142e-01	ci left: 8.948611e-04	ci right 1.121086e-03	k: 311	n:310000
EMR2   310000 perm   102 sec   (3033 perm/sec)   p_kst 1.003226e-03   p_cons 3.874355e-01   p_joint 3.193548e-03

Joint ci ratio: 1.218864e-01	ci left: 3.025445e-03	ci right 3.421136e-03	k: 1030	n:320000
Cons ci ratio: 8.715138e-03	ci left: 3.856491e-01	ci right 3.890279e-01	k: 123948	n:320000
KS ci ratio: 2.197131e-01	ci left: 8.846094e-04	ci right 1.105838e-03	k: 317	n:320000
EMR2   320000 perm   107 sec   (2998 perm/sec)   p_kst 9.906250e-04   p_cons 3.873375e-01   p_joint 3.218750e-03

Joint ci ratio: 1.134777e-01	ci left: 3.398512e-03	ci right 3.810281e-03	k: 1188	n:330000
Cons ci ratio: 8.580782e-03	ci left: 3.857465e-01	ci right 3.890737e-01	k: 127845	n:330000
KS ci ratio: 2.163379e-01	ci left: 8.864515e-04	ci right 1.104283e-03	k: 327	n:330000
EMR2   330000 perm   111 sec   (2961 perm/sec)   p_kst 9.909091e-04   p_cons 3.874091e-01   p_joint 3.600000e-03

Joint ci ratio: 1.121198e-01	ci left: 3.381441e-03	ci right 3.785916e-03	k: 1217	n:340000
Cons ci ratio: 8.452873e-03	ci left: 3.858149e-01	ci right 3.890929e-01	k: 131734	n:340000
KS ci ratio: 2.137475e-01	ci left: 8.826414e-04	ci right 1.096599e-03	k: 335	n:340000
EMR2   340000 perm   116 sec   (2927 perm/sec)   p_kst 9.852941e-04   p_cons 3.874529e-01   p_joint 3.579412e-03

Joint ci ratio: 1.116209e-01	ci left: 3.315372e-03	ci right 3.710062e-03	k: 1228	n:350000
Cons ci ratio: 8.329967e-03	ci left: 3.859112e-01	ci right 3.891421e-01	k: 135634	n:350000
KS ci ratio: 2.109414e-01	ci left: 8.817699e-04	ci right 1.092347e-03	k: 344	n:350000
EMR2   350000 perm   121 sec   (2896 perm/sec)   p_kst 9.828571e-04   p_cons 3.875257e-01   p_joint 3.508571e-03

Joint ci ratio: 1.101084e-01	ci left: 3.315103e-03	ci right 3.704067e-03	k: 1262	n:360000
Cons ci ratio: 8.214096e-03	ci left: 3.858970e-01	ci right 3.890826e-01	k: 139496	n:360000
KS ci ratio: 2.079491e-01	ci left: 8.835973e-04	ci right 1.091237e-03	k: 354	n:360000
EMR2   360000 perm   126 sec   (2865 perm/sec)   p_kst 9.833333e-04   p_cons 3.874889e-01   p_joint 3.505556e-03

Joint ci ratio: 1.063754e-01	ci left: 3.462179e-03	ci right 3.853766e-03	k: 1352	n:370000
Cons ci ratio: 8.603132e-03	ci left: 3.578861e-01	ci right 3.609810e-01	k: 132990	n:370000
KS ci ratio: 2.050807e-01	ci left: 8.853458e-04	ci right 1.090166e-03	k: 364	n:370000
EMR2   370000 perm   130 sec   (2839 perm/sec)   p_kst 9.837838e-04   p_cons 3.594324e-01   p_joint 3.654054e-03

Joint ci ratio: 9.965562e-02	ci left: 3.853109e-03	ci right 4.259774e-03	k: 1540	n:380000
Cons ci ratio: 8.487109e-03	ci left: 3.580188e-01	ci right 3.610728e-01	k: 136627	n:380000
KS ci ratio: 2.028700e-01	ci left: 8.820244e-04	ci right 1.083604e-03	k: 372	n:380000
EMR2   380000 perm   135 sec   (2813 perm/sec)   p_kst 9.789474e-04   p_cons 3.595447e-01   p_joint 4.052632e-03

Joint ci ratio: 9.854353e-02	ci left: 3.841830e-03	ci right 4.242517e-03	k: 1575	n:390000
Cons ci ratio: 8.375424e-03	ci left: 3.581577e-01	ci right 3.611726e-01	k: 140269	n:390000
KS ci ratio: 2.004661e-01	ci left: 8.813200e-04	ci right 1.080060e-03	k: 381	n:390000
EMR2   390000 perm   140 sec   (2786 perm/sec)   p_kst 9.769231e-04   p_cons 3.596641e-01   p_joint 4.038462e-03

Joint ci ratio: 9.701542e-02	ci left: 3.867730e-03	ci right 4.264507e-03	k: 1625	n:400000
Cons ci ratio: 8.272029e-03	ci left: 3.580677e-01	ci right 3.610444e-01	k: 143822	n:400000
KS ci ratio: 1.983999e-01	ci left: 8.782882e-04	ci right 1.074057e-03	k: 389	n:400000
EMR2   400000 perm   145 sec   (2761 perm/sec)   p_kst 9.725000e-04   p_cons 3.595550e-01   p_joint 4.062500e-03

Joint ci ratio: 9.720046e-02	ci left: 3.759106e-03	ci right 4.145517e-03	k: 1619	n:410000
Cons ci ratio: 8.168952e-03	ci left: 3.581747e-01	ci right 3.611150e-01	k: 147454	n:410000
KS ci ratio: 1.963962e-01	ci left: 8.754143e-04	ci right 1.068336e-03	k: 397	n:410000
EMR2   410000 perm   150 sec   (2735 perm/sec)   p_kst 9.682927e-04   p_cons 3.596439e-01   p_joint 3.948780e-03

Joint ci ratio: 9.756849e-02	ci left: 3.641717e-03	ci right 4.017560e-03	k: 1607	n:420000
Cons ci ratio: 8.071928e-03	ci left: 3.581461e-01	ci right 3.610511e-01	k: 151031	n:420000
KS ci ratio: 1.935003e-01	ci left: 8.817483e-04	ci right 1.072863e-03	k: 409	n:420000
EMR2   420000 perm   155 sec   (2710 perm/sec)   p_kst 9.738095e-04   p_cons 3.595976e-01   p_joint 3.826190e-03

Joint ci ratio: 9.717933e-02	ci left: 3.586517e-03	ci right 3.955103e-03	k: 1620	n:430000
Cons ci ratio: 7.977235e-03	ci left: 3.581794e-01	ci right 3.610504e-01	k: 154634	n:430000
KS ci ratio: 1.916400e-01	ci left: 8.789501e-04	ci right 1.067413e-03	k: 417	n:430000
EMR2   430000 perm   160 sec   (2685 perm/sec)   p_kst 9.697674e-04   p_cons 3.596140e-01   p_joint 3.767442e-03

Joint ci ratio: 9.730409e-02	ci left: 3.496128e-03	ci right 3.855911e-03	k: 1616	n:440000
Cons ci ratio: 7.888055e-03	ci left: 3.580797e-01	ci right 3.609176e-01	k: 158179	n:440000
KS ci ratio: 1.896098e-01	ci left: 8.784523e-04	ci right 1.064583e-03	k: 426	n:440000
EMR2   440000 perm   166 sec   (2658 perm/sec)   p_kst 9.681818e-04   p_cons 3.594977e-01   p_joint 3.672727e-03

Joint ci ratio: 9.629725e-02	ci left: 3.492162e-03	ci right 3.847609e-03	k: 1650	n:450000
Cons ci ratio: 7.799917e-03	ci left: 3.580956e-01	ci right 3.609018e-01	k: 161774	n:450000
KS ci ratio: 1.880751e-01	ci left: 8.737511e-04	ci right 1.057216e-03	k: 433	n:450000
EMR2   450000 perm   171 sec   (2631 perm/sec)   p_kst 9.622222e-04   p_cons 3.594978e-01   p_joint 3.666667e-03

Joint ci ratio: 9.603875e-02	ci left: 3.435335e-03	ci right 3.784007e-03	k: 1659	n:460000
Cons ci ratio: 7.712813e-03	ci left: 3.582217e-01	ci right 3.609974e-01	k: 165420	n:460000
KS ci ratio: 1.865770e-01	ci left: 8.692601e-04	ci right 1.050164e-03	k: 440	n:460000
EMR2   460000 perm   177 sec   (2603 perm/sec)   p_kst 9.565217e-04   p_cons 3.596087e-01   p_joint 3.606522e-03

Joint ci ratio: 9.509847e-02	ci left: 3.430777e-03	ci right 3.775387e-03	k: 1692	n:470000
Cons ci ratio: 7.631241e-03	ci left: 3.581811e-01	ci right 3.609270e-01	k: 168990	n:470000
KS ci ratio: 1.840887e-01	ci left: 8.751129e-04	ci right 1.054535e-03	k: 452	n:470000
EMR2   470000 perm   183 sec   (2569 perm/sec)   p_kst 9.617021e-04   p_cons 3.595532e-01   p_joint 3.600000e-03

Joint ci ratio: 9.437753e-02	ci left: 3.412185e-03	ci right 3.752184e-03	k: 1718	n:480000
Cons ci ratio: 7.552032e-03	ci left: 3.581527e-01	ci right 3.608698e-01	k: 172565	n:480000
KS ci ratio: 1.813075e-01	ci left: 8.847146e-04	ci right 1.063064e-03	k: 466	n:480000
EMR2   480000 perm   190 sec   (2531 perm/sec)   p_kst 9.708333e-04   p_cons 3.595104e-01   p_joint 3.579167e-03

Joint ci ratio: 9.451904e-02	ci left: 3.332579e-03	ci right 3.665171e-03	k: 1713	n:490000
Cons ci ratio: 7.475803e-03	ci left: 3.580910e-01	ci right 3.607801e-01	k: 176123	n:490000
KS ci ratio: 1.795854e-01	ci left: 8.841969e-04	ci right 1.060565e-03	k: 475	n:490000
EMR2   490000 perm   196 sec   (2504 perm/sec)   p_kst 9.693878e-04   p_cons 3.594347e-01   p_joint 3.495918e-03

Joint ci ratio: 9.424688e-02	ci left: 3.285451e-03	ci right 3.612344e-03	k: 1723	n:500000
Cons ci ratio: 7.403187e-03	ci left: 3.579479e-01	ci right 3.606097e-01	k: 179639	n:500000
KS ci ratio: 1.777282e-01	ci left: 8.856187e-04	ci right 1.060247e-03	k: 485	n:500000
EMR2   500000 perm   202 sec   (2480 perm/sec)   p_kst 9.700000e-04   p_cons 3.592780e-01   p_joint 3.446000e-03

Joint ci ratio: 9.338442e-02	ci left: 3.282303e-03	ci right 3.605731e-03	k: 1755	n:510000
Cons ci ratio: 7.333239e-03	ci left: 3.577734e-01	ci right 3.604086e-01	k: 183136	n:510000
KS ci ratio: 1.770023e-01	ci left: 8.757481e-04	ci right 1.047649e-03	k: 489	n:510000
EMR2   510000 perm   208 sec   (2456 perm/sec)   p_kst 9.588235e-04   p_cons 3.590902e-01   p_joint 3.441176e-03

Joint ci ratio: 9.320131e-02	ci left: 3.232326e-03	ci right 3.550170e-03	k: 1762	n:520000
Cons ci ratio: 7.263111e-03	ci left: 3.577402e-01	ci right 3.603498e-01	k: 186703	n:520000
KS ci ratio: 1.755751e-01	ci left: 8.736125e-04	ci right 1.043565e-03	k: 497	n:520000
EMR2   520000 perm   214 sec   (2434 perm/sec)   p_kst 9.557692e-04   p_cons 3.590442e-01   p_joint 3.388462e-03

Joint ci ratio: 9.603272e-02	ci left: 2.983420e-03	ci right 3.286203e-03	k: 1660	n:530000
Cons ci ratio: 7.193836e-03	ci left: 3.577800e-01	ci right 3.603649e-01	k: 190308	n:530000
KS ci ratio: 1.738383e-01	ci left: 8.751722e-04	ci right 1.043567e-03	k: 507	n:530000
EMR2   530000 perm   220 sec   (2412 perm/sec)   p_kst 9.566038e-04   p_cons 3.590717e-01   p_joint 3.132075e-03

Joint ci ratio: 9.574684e-02	ci left: 2.946243e-03	ci right 3.244313e-03	k: 1670	n:540000
Cons ci ratio: 7.126936e-03	ci left: 3.577907e-01	ci right 3.603516e-01	k: 193898	n:540000
KS ci ratio: 1.724857e-01	ci left: 8.731380e-04	ci right 1.039698e-03	k: 515	n:540000
EMR2   540000 perm   226 sec   (2391 perm/sec)   p_kst 9.537037e-04   p_cons 3.590704e-01   p_joint 3.092593e-03

Joint ci ratio: 1.028795e-01	ci left: 2.497248e-03	ci right 2.769851e-03	k: 1447	n:550000
Cons ci ratio: 7.062957e-03	ci left: 3.577302e-01	ci right 3.602676e-01	k: 197449	n:550000
KS ci ratio: 1.705140e-01	ci left: 8.781446e-04	ci right 1.043548e-03	k: 527	n:550000
EMR2   550000 perm   232 sec   (2370 perm/sec)   p_kst 9.581818e-04   p_cons 3.589982e-01   p_joint 2.630909e-03

Joint ci ratio: 1.021072e-01	ci left: 2.490932e-03	ci right 2.760683e-03	k: 1469	n:560000
Cons ci ratio: 6.999801e-03	ci left: 3.577292e-01	ci right 3.602437e-01	k: 201032	n:560000
KS ci ratio: 1.693953e-01	ci left: 8.744316e-04	ci right 1.037945e-03	k: 534	n:560000
EMR2   560000 perm   238 sec   (2350 perm/sec)   p_kst 9.535714e-04   p_cons 3.589857e-01   p_joint 2.623214e-03

Joint ci ratio: 1.010131e-01	ci left: 2.501947e-03	ci right 2.769815e-03	k: 1501	n:570000
Cons ci ratio: 6.938071e-03	ci left: 3.577440e-01	ci right 3.602364e-01	k: 204624	n:570000
KS ci ratio: 1.675265e-01	ci left: 8.792559e-04	ci right 1.041675e-03	k: 546	n:570000
EMR2   570000 perm   245 sec   (2330 perm/sec)   p_kst 9.578947e-04   p_cons 3.589895e-01   p_joint 2.633333e-03

Joint ci ratio: 1.004803e-01	ci left: 2.485700e-03	ci right 2.750342e-03	k: 1517	n:580000
Cons ci ratio: 6.877740e-03	ci left: 3.577722e-01	ci right 3.602430e-01	k: 208224	n:580000
KS ci ratio: 1.663150e-01	ci left: 8.773132e-04	ci right 1.038084e-03	k: 554	n:580000
EMR2   580000 perm   251 sec   (2310 perm/sec)   p_kst 9.551724e-04   p_cons 3.590069e-01   p_joint 2.615517e-03

Joint ci ratio: 9.969543e-02	ci left: 2.483229e-03	ci right 2.745422e-03	k: 1541	n:590000
Cons ci ratio: 6.817575e-03	ci left: 3.578927e-01	ci right 3.603426e-01	k: 211879	n:590000
KS ci ratio: 1.648365e-01	ci left: 8.786903e-04	ci right 1.038140e-03	k: 564	n:590000
EMR2   590000 perm   258 sec   (2291 perm/sec)   p_kst 9.559322e-04   p_cons 3.591169e-01   p_joint 2.611864e-03

Joint ci ratio: 9.911927e-02	ci left: 2.471095e-03	ci right 2.730411e-03	k: 1559	n:600000
Cons ci ratio: 6.762462e-03	ci left: 3.577711e-01	ci right 3.602003e-01	k: 215391	n:600000
KS ci ratio: 1.639687e-01	ci left: 8.736339e-04	ci right 1.031249e-03	k: 570	n:600000
EMR2   600000 perm   264 sec   (2272 perm/sec)   p_kst 9.500000e-04   p_cons 3.589850e-01   p_joint 2.598333e-03

Joint ci ratio: 9.842798e-02	ci left: 2.465760e-03	ci right 2.722607e-03	k: 1581	n:610000
Cons ci ratio: 6.708855e-03	ci left: 3.576404e-01	ci right 3.600494e-01	k: 218895	n:610000
KS ci ratio: 1.629731e-01	ci left: 8.703178e-04	ci right 1.026288e-03	k: 577	n:610000
EMR2   610000 perm   271 sec   (2254 perm/sec)   p_kst 9.459016e-04   p_cons 3.588443e-01   p_joint 2.591803e-03

Joint ci ratio: 9.996204e-02	ci left: 2.350484e-03	ci right 2.599363e-03	k: 1533	n:620000
Cons ci ratio: 6.654799e-03	ci left: 3.576317e-01	ci right 3.600212e-01	k: 222472	n:620000
KS ci ratio: 1.614439e-01	ci left: 8.733023e-04	ci right 1.028196e-03	k: 588	n:620000
EMR2   620000 perm   277 sec   (2235 perm/sec)   p_kst 9.483871e-04   p_cons 3.588258e-01   p_joint 2.472581e-03

Joint ci ratio: 1.012287e-01	ci left: 2.254369e-03	ci right 2.496275e-03	k: 1495	n:630000
Cons ci ratio: 6.600480e-03	ci left: 3.577312e-01	ci right 3.601018e-01	k: 226117	n:630000
KS ci ratio: 1.607636e-01	ci left: 8.670567e-04	ci right 1.020132e-03	k: 593	n:630000
EMR2   630000 perm   284 sec   (2216 perm/sec)   p_kst 9.412698e-04   p_cons 3.589159e-01   p_joint 2.373016e-03

Joint ci ratio: 1.030056e-01	ci left: 2.141485e-03	ci right 2.375556e-03	k: 1444	n:640000
Cons ci ratio: 6.549515e-03	ci left: 3.576841e-01	ci right 3.600360e-01	k: 229670	n:640000
KS ci ratio: 1.591636e-01	ci left: 8.715085e-04	ci right 1.023692e-03	k: 605	n:640000
EMR2   640000 perm   291 sec   (2197 perm/sec)   p_kst 9.453125e-04   p_cons 3.588594e-01   p_joint 2.256250e-03

Joint ci ratio: 1.018829e-01	ci left: 2.156510e-03	ci right 2.389500e-03	k: 1476	n:650000
Cons ci ratio: 6.500821e-03	ci left: 3.575600e-01	ci right 3.598935e-01	k: 233172	n:650000
KS ci ratio: 1.574829e-01	ci left: 8.773085e-04	ci right 1.028734e-03	k: 618	n:650000
EMR2   650000 perm   298 sec   (2179 perm/sec)   p_kst 9.507692e-04   p_cons 3.587262e-01   p_joint 2.270769e-03

Joint ci ratio: 1.009976e-01	ci left: 2.162230e-03	ci right 2.393688e-03	k: 1502	n:660000
Cons ci ratio: 6.450137e-03	ci left: 3.576578e-01	ci right 3.599737e-01	k: 236818	n:660000
KS ci ratio: 1.564752e-01	ci left: 8.756610e-04	ci right 1.025745e-03	k: 626	n:660000
EMR2   660000 perm   305 sec   (2161 perm/sec)   p_kst 9.484848e-04   p_cons 3.588152e-01   p_joint 2.275758e-03

Joint ci ratio: 1.003986e-01	ci left: 2.156147e-03	ci right 2.385504e-03	k: 1520	n:670000
Cons ci ratio: 6.401305e-03	ci left: 3.577036e-01	ci right 3.600021e-01	k: 240431	n:670000
KS ci ratio: 1.551203e-01	ci left: 8.783694e-04	ci right 1.027492e-03	k: 637	n:670000
EMR2   670000 perm   313 sec   (2144 perm/sec)   p_kst 9.507463e-04   p_cons 3.588522e-01   p_joint 2.268657e-03

Joint ci ratio: 9.997298e-02	ci left: 2.143077e-03	ci right 2.370021e-03	k: 1533	n:680000
Cons ci ratio: 6.353667e-03	ci left: 3.577407e-01	ci right 3.600223e-01	k: 244039	n:680000
KS ci ratio: 1.545165e-01	ci left: 8.725200e-04	ci right 1.020020e-03	k: 642	n:680000
EMR2   680000 perm   320 sec   (2127 perm/sec)   p_kst 9.441176e-04   p_cons 3.588809e-01   p_joint 2.254412e-03

Joint ci ratio: 1.003688e-01	ci left: 2.095059e-03	ci right 2.317849e-03	k: 1521	n:690000
Cons ci ratio: 6.307931e-03	ci left: 3.577145e-01	ci right 3.599795e-01	k: 247604	n:690000
KS ci ratio: 1.533287e-01	ci left: 8.738094e-04	ci right 1.020288e-03	k: 652	n:690000
EMR2   690000 perm   327 sec   (2110 perm/sec)   p_kst 9.449275e-04   p_cons 3.588464e-01   p_joint 2.204348e-03

Joint ci ratio: 9.965122e-02	ci left: 2.095772e-03	ci right 2.316951e-03	k: 1543	n:700000
Cons ci ratio: 6.262527e-03	ci left: 3.577362e-01	ci right 3.599850e-01	k: 251202	n:700000
KS ci ratio: 1.522830e-01	ci left: 8.736920e-04	ci right 1.019060e-03	k: 661	n:700000
EMR2   700000 perm   334 sec   (2093 perm/sec)   p_kst 9.442857e-04   p_cons 3.588600e-01   p_joint 2.204286e-03

Joint ci ratio: 9.955589e-02	ci left: 2.070373e-03	ci right 2.288650e-03	k: 1546	n:710000
Cons ci ratio: 6.217919e-03	ci left: 3.577700e-01	ci right 3.600029e-01	k: 254809	n:710000
KS ci ratio: 1.505859e-01	ci left: 8.817130e-04	ci right 1.026634e-03	k: 676	n:710000
EMR2   710000 perm   342 sec   (2076 perm/sec)   p_kst 9.521127e-04   p_cons 3.588859e-01   p_joint 2.177465e-03

Joint ci ratio: 9.930042e-02	ci left: 2.052452e-03	ci right 2.268251e-03	k: 1554	n:720000
Cons ci ratio: 6.175033e-03	ci left: 3.577447e-01	ci right 3.599620e-01	k: 258374	n:720000
KS ci ratio: 1.499234e-01	ci left: 8.774868e-04	ci right 1.021022e-03	k: 682	n:720000
EMR2   720000 perm   349 sec   (2060 perm/sec)   p_kst 9.472222e-04   p_cons 3.588528e-01   p_joint 2.158333e-03

Joint ci ratio: 9.866804e-02	ci left: 2.051055e-03	ci right 2.265255e-03	k: 1574	n:730000
Cons ci ratio: 6.133332e-03	ci left: 3.576968e-01	ci right 3.598988e-01	k: 261922	n:730000
KS ci ratio: 1.490531e-01	ci left: 8.760154e-04	ci right 1.018404e-03	k: 690	n:730000
EMR2   730000 perm   357 sec   (2044 perm/sec)   p_kst 9.452055e-04   p_cons 3.587973e-01   p_joint 2.156164e-03

Joint ci ratio: 8.860787e-02	ci left: 2.520927e-03	ci right 2.755966e-03	k: 1951	n:740000
Cons ci ratio: 6.092609e-03	ci left: 3.576395e-01	ci right 3.598265e-01	k: 265462	n:740000
KS ci ratio: 1.484105e-01	ci left: 8.719836e-04	ci right 1.013051e-03	k: 696	n:740000
EMR2   740000 perm   365 sec   (2029 perm/sec)   p_kst 9.405405e-04   p_cons 3.587324e-01   p_joint 2.636486e-03

Joint ci ratio: 8.802361e-02	ci left: 2.521216e-03	ci right 2.754652e-03	k: 1977	n:750000
Cons ci ratio: 6.051931e-03	ci left: 3.576411e-01	ci right 3.598134e-01	k: 269045	n:750000
KS ci ratio: 1.471490e-01	ci left: 8.757657e-04	ci right 1.016135e-03	k: 708	n:750000
EMR2   750000 perm   372 sec   (2013 perm/sec)   p_kst 9.440000e-04   p_cons 3.587267e-01   p_joint 2.636000e-03

Joint ci ratio: 8.734158e-02	ci left: 2.527937e-03	ci right 2.760090e-03	k: 2008	n:760000
Cons ci ratio: 6.011903e-03	ci left: 3.576545e-01	ci right 3.598124e-01	k: 272637	n:760000
KS ci ratio: 1.457169e-01	ci left: 8.819888e-04	ci right 1.021860e-03	k: 722	n:760000
EMR2   760000 perm   380 sec   (1998 perm/sec)   p_kst 9.500000e-04   p_cons 3.587329e-01   p_joint 2.642105e-03

Joint ci ratio: 8.688895e-02	ci left: 2.521785e-03	ci right 2.752112e-03	k: 2029	n:770000
Cons ci ratio: 5.973333e-03	ci left: 3.576156e-01	ci right 3.597595e-01	k: 276189	n:770000
KS ci ratio: 1.451163e-01	ci left: 8.780430e-04	ci right 1.016665e-03	k: 728	n:770000
EMR2   770000 perm   388 sec   (1983 perm/sec)   p_kst 9.454545e-04   p_cons 3.586870e-01   p_joint 2.635065e-03

Joint ci ratio: 8.695486e-02	ci left: 2.485690e-03	ci right 2.712901e-03	k: 2026	n:780000
Cons ci ratio: 5.934255e-03	ci left: 3.576739e-01	ci right 3.598040e-01	k: 279816	n:780000
KS ci ratio: 1.444248e-01	ci left: 8.754352e-04	ci right 1.012930e-03	k: 735	n:780000
EMR2   780000 perm   396 sec   (1968 perm/sec)   p_kst 9.423077e-04   p_cons 3.587385e-01   p_joint 2.597436e-03

Joint ci ratio: 8.642360e-02	ci left: 2.485185e-03	ci right 2.710892e-03	k: 2051	n:790000
Cons ci ratio: 5.896259e-03	ci left: 3.577055e-01	ci right 3.598221e-01	k: 283423	n:790000
KS ci ratio: 1.439372e-01	ci left: 8.704544e-04	ci right 1.006665e-03	k: 740	n:790000
EMR2   790000 perm   404 sec   (1954 perm/sec)   p_kst 9.367089e-04   p_cons 3.587633e-01   p_joint 2.596203e-03

Joint ci ratio: 8.569537e-02	ci left: 2.496929e-03	ci right 2.721696e-03	k: 2086	n:800000
Cons ci ratio: 5.858967e-03	ci left: 3.577376e-01	ci right 3.598409e-01	k: 287031	n:800000
KS ci ratio: 1.428804e-01	ci left: 8.728304e-04	ci right 1.008325e-03	k: 751	n:800000
EMR2   800000 perm   412 sec   (1940 perm/sec)   p_kst 9.387500e-04   p_cons 3.587887e-01   p_joint 2.607500e-03

Joint ci ratio: 9.436416e-02	ci left: 2.025584e-03	ci right 2.227386e-03	k: 1721	n:810000
Cons ci ratio: 5.822312e-03	ci left: 3.577738e-01	ci right 3.598642e-01	k: 290643	n:810000
KS ci ratio: 1.319962e-01	ci left: 1.015851e-03	ci right 1.160594e-03	k: 880	n:810000
EMR2   810000 perm   421 sec   (1926 perm/sec)   p_kst 1.086420e-03   p_cons 3.588185e-01   p_joint 2.124691e-03

Joint ci ratio: 9.491937e-02	ci left: 1.977066e-03	ci right 2.175258e-03	k: 1701	n:820000
Cons ci ratio: 5.786367e-03	ci left: 3.578068e-01	ci right 3.598844e-01	k: 294253	n:820000
KS ci ratio: 1.311798e-01	ci left: 1.016436e-03	ci right 1.160297e-03	k: 891	n:820000
EMR2   820000 perm   429 sec   (1912 perm/sec)   p_kst 1.086585e-03   p_cons 3.588451e-01   p_joint 2.074390e-03

Joint ci ratio: 9.568409e-02	ci left: 1.921489e-03	ci right 2.115748e-03	k: 1674	n:830000
Cons ci ratio: 5.752360e-03	ci left: 3.577367e-01	ci right 3.598016e-01	k: 297778	n:830000
KS ci ratio: 1.305957e-01	ci left: 1.013512e-03	ci right 1.156271e-03	k: 899	n:830000
EMR2   830000 perm   437 sec   (1898 perm/sec)   p_kst 1.083133e-03   p_cons 3.587687e-01   p_joint 2.016867e-03

Joint ci ratio: 9.540032e-02	ci left: 1.910233e-03	ci right 2.102750e-03	k: 1684	n:840000
Cons ci ratio: 5.717909e-03	ci left: 3.577516e-01	ci right 3.598042e-01	k: 301373	n:840000
KS ci ratio: 1.296625e-01	ci left: 1.016419e-03	ci right 1.158486e-03	k: 912	n:840000
EMR2   840000 perm   446 sec   (1885 perm/sec)   p_kst 1.085714e-03   p_cons 3.587774e-01   p_joint 2.004762e-03

Joint ci ratio: 9.679276e-02	ci left: 1.832643e-03	ci right 2.020189e-03	k: 1636	n:850000
Cons ci ratio: 5.684331e-03	ci left: 3.577449e-01	ci right 3.597854e-01	k: 304950	n:850000
KS ci ratio: 1.295214e-01	ci left: 1.006738e-03	ci right 1.147286e-03	k: 914	n:850000
EMR2   850000 perm   454 sec   (1871 perm/sec)   p_kst 1.075294e-03   p_cons 3.587647e-01   p_joint 1.924706e-03

Joint ci ratio: 8.748609e-02	ci left: 2.227152e-03	ci right 2.432037e-03	k: 2002	n:860000
Cons ci ratio: 5.651924e-03	ci left: 3.576909e-01	ci right 3.597194e-01	k: 308486	n:860000
KS ci ratio: 1.286802e-01	ci left: 1.008534e-03	ci right 1.148349e-03	k: 926	n:860000
EMR2   860000 perm   463 sec   (1857 perm/sec)   p_kst 1.076744e-03   p_cons 3.587047e-01   p_joint 2.327907e-03

Joint ci ratio: 8.716075e-02	ci left: 2.218417e-03	ci right 2.421701e-03	k: 2017	n:870000
Cons ci ratio: 5.619587e-03	ci left: 3.576771e-01	ci right 3.596939e-01	k: 312056	n:870000
KS ci ratio: 1.278552e-01	ci left: 1.010293e-03	ci right 1.149385e-03	k: 938	n:870000
EMR2   870000 perm   472 sec   (1844 perm/sec)   p_kst 1.078161e-03   p_cons 3.586851e-01   p_joint 2.318391e-03

Joint ci ratio: 8.716190e-02	ci left: 2.193206e-03	ci right 2.394183e-03	k: 2017	n:880000
Cons ci ratio: 5.587772e-03	ci left: 3.576660e-01	ci right 3.596713e-01	k: 315628	n:880000
KS ci ratio: 1.270459e-01	ci left: 1.012014e-03	ci right 1.150395e-03	k: 950	n:880000
EMR2   880000 perm   480 sec   (1832 perm/sec)   p_kst 1.079545e-03   p_cons 3.586682e-01   p_joint 2.292045e-03

Joint ci ratio: 8.677600e-02	ci left: 2.188348e-03	ci right 2.387947e-03	k: 2035	n:890000
Cons ci ratio: 5.556477e-03	ci left: 3.576563e-01	ci right 3.596502e-01	k: 319201	n:890000
KS ci ratio: 1.265812e-01	ci left: 1.008258e-03	ci right 1.145584e-03	k: 957	n:890000
EMR2   890000 perm   489 sec   (1819 perm/sec)   p_kst 1.075281e-03   p_cons 3.586528e-01   p_joint 2.286517e-03

Joint ci ratio: 8.283322e-02	ci left: 2.379379e-03	ci right 2.586066e-03	k: 2233	n:900000
Cons ci ratio: 5.526329e-03	ci left: 3.575946e-01	ci right 3.595774e-01	k: 322727	n:900000
KS ci ratio: 1.256014e-01	ci left: 1.013197e-03	ci right 1.150047e-03	k: 972	n:900000
EMR2   900000 perm   498 sec   (1806 perm/sec)   p_kst 1.080000e-03   p_cons 3.585856e-01   p_joint 2.481111e-03

Joint ci ratio: 8.274159e-02	ci left: 2.358612e-03	ci right 2.563257e-03	k: 2238	n:910000
Cons ci ratio: 5.495472e-03	ci left: 3.576343e-01	ci right 3.596062e-01	k: 326344	n:910000
KS ci ratio: 1.251523e-01	ci left: 1.009514e-03	ci right 1.145343e-03	k: 979	n:910000
EMR2   910000 perm   507 sec   (1794 perm/sec)   p_kst 1.075824e-03   p_cons 3.586198e-01   p_joint 2.459341e-03

Joint ci ratio: 8.230169e-02	ci left: 2.358523e-03	ci right 2.562021e-03	k: 2262	n:920000
Cons ci ratio: 5.466263e-03	ci left: 3.575775e-01	ci right 3.595386e-01	k: 329873	n:920000
KS ci ratio: 1.245817e-01	ci left: 1.008018e-03	ci right 1.142981e-03	k: 988	n:920000
EMR2   920000 perm   516 sec   (1782 perm/sec)   p_kst 1.073913e-03   p_cons 3.585576e-01   p_joint 2.458696e-03

Joint ci ratio: 8.188669e-02	ci left: 2.357386e-03	ci right 2.559711e-03	k: 2285	n:930000
Cons ci ratio: 5.437908e-03	ci left: 3.574887e-01	ci right 3.594390e-01	k: 333371	n:930000
KS ci ratio: 1.240188e-01	ci left: 1.006555e-03	ci right 1.140670e-03	k: 997	n:930000
EMR2   930000 perm   525 sec   (1770 perm/sec)   p_kst 1.072043e-03   p_cons 3.584634e-01   p_joint 2.456989e-03

Joint ci ratio: 8.137198e-02	ci left: 2.362529e-03	ci right 2.563960e-03	k: 2314	n:940000
Cons ci ratio: 5.409139e-03	ci left: 3.574741e-01	ci right 3.594140e-01	k: 336937	n:940000
KS ci ratio: 1.230969e-01	ci left: 1.011311e-03	ci right 1.144985e-03	k: 1012	n:940000
EMR2   940000 perm   535 sec   (1758 perm/sec)   p_kst 1.076596e-03   p_cons 3.584436e-01   p_joint 2.461702e-03

Joint ci ratio: 8.130266e-02	ci left: 2.341785e-03	ci right 2.541269e-03	k: 2318	n:950000
Cons ci ratio: 5.379837e-03	ci left: 3.575440e-01	ci right 3.594737e-01	k: 340583	n:950000
KS ci ratio: 1.226138e-01	ci left: 1.008828e-03	ci right 1.141612e-03	k: 1020	n:950000
EMR2   950000 perm   544 sec   (1747 perm/sec)   p_kst 1.073684e-03   p_cons 3.585084e-01   p_joint 2.440000e-03

Joint ci ratio: 8.155083e-02	ci left: 2.303103e-03	ci right 2.499919e-03	k: 2304	n:960000
Cons ci ratio: 5.350945e-03	ci left: 3.576176e-01	ci right 3.595374e-01	k: 344234	n:960000
KS ci ratio: 1.221959e-01	ci left: 1.005388e-03	ci right 1.137236e-03	k: 1027	n:960000
EMR2   960000 perm   553 sec   (1735 perm/sec)   p_kst 1.069792e-03   p_cons 3.585771e-01   p_joint 2.400000e-03

Joint ci ratio: 8.107723e-02	ci left: 2.306629e-03	ci right 2.502547e-03	k: 2331	n:970000
Cons ci ratio: 5.322167e-03	ci left: 3.577197e-01	ci right 3.596296e-01	k: 347914	n:970000
KS ci ratio: 1.214888e-01	ci left: 1.007017e-03	ci right 1.138259e-03	k: 1039	n:970000
EMR2   970000 perm   563 sec   (1724 perm/sec)   p_kst 1.071134e-03   p_cons 3.586742e-01   p_joint 2.403093e-03

Joint ci ratio: 7.269732e-02	ci left: 2.850599e-03	ci right 3.066641e-03	k: 2898	n:980000
Cons ci ratio: 5.295681e-03	ci left: 3.576606e-01	ci right 3.595607e-01	k: 351438	n:980000
KS ci ratio: 1.205646e-01	ci left: 1.012574e-03	ci right 1.143465e-03	k: 1055	n:980000
EMR2   980000 perm   572 sec   (1712 perm/sec)   p_kst 1.076531e-03   p_cons 3.586102e-01   p_joint 2.957143e-03

Joint ci ratio: 7.455245e-02	ci left: 2.681002e-03	ci right 2.889600e-03	k: 2756	n:990000
Cons ci ratio: 5.268510e-03	ci left: 3.576966e-01	ci right 3.595871e-01	k: 355055	n:990000
KS ci ratio: 1.200542e-01	ci left: 1.011163e-03	ci right 1.141279e-03	k: 1064	n:990000
EMR2   990000 perm   582 sec   (1701 perm/sec)   p_kst 1.074747e-03   p_cons 3.586414e-01   p_joint 2.783838e-03

Joint ci ratio: 7.433750e-02	ci left: 2.669894e-03	ci right 2.877003e-03	k: 2772	n:1000000
Cons ci ratio: 5.242117e-03	ci left: 3.576999e-01	ci right 3.595809e-01	k: 358640	n:1000000
KS ci ratio: 1.194945e-01	ci left: 1.010752e-03	ci right 1.140166e-03	k: 1074	n:1000000
EMR2   1000000 perm   592 sec   (1690 perm/sec)   p_kst 1.074000e-03   p_cons 3.586400e-01   p_joint 2.772000e-03

Joint ci ratio: 7.458164e-02	ci left: 2.625967e-03	ci right 2.830367e-03	k: 2754	n:1010000
Cons ci ratio: 5.216196e-03	ci left: 3.576963e-01	ci right 3.595679e-01	k: 362218	n:1010000
KS ci ratio: 1.185604e-01	ci left: 1.017075e-03	ci right 1.146209e-03	k: 1091	n:1010000
EMR2   1010000 perm   601 sec   (1680 perm/sec)   p_kst 1.080198e-03   p_cons 3.586317e-01   p_joint 2.726733e-03

Joint ci ratio: 7.425901e-02	ci left: 2.623314e-03	ci right 2.826585e-03	k: 2778	n:1020000
Cons ci ratio: 5.190689e-03	ci left: 3.576898e-01	ci right 3.595522e-01	k: 365793	n:1020000
KS ci ratio: 1.181824e-01	ci left: 1.013763e-03	ci right 1.142038e-03	k: 1098	n:1020000
EMR2   1020000 perm   611 sec   (1670 perm/sec)   p_kst 1.076471e-03   p_cons 3.586206e-01   p_joint 2.723529e-03

Joint ci ratio: 7.391409e-02	ci left: 2.622620e-03	ci right 2.824853e-03	k: 2804	n:1030000
Cons ci ratio: 5.165367e-03	ci left: 3.576999e-01	ci right 3.595533e-01	k: 369385	n:1030000
KS ci ratio: 1.178081e-01	ci left: 1.010516e-03	ci right 1.137947e-03	k: 1105	n:1030000
EMR2   1030000 perm   621 sec   (1659 perm/sec)   p_kst 1.072816e-03   p_cons 3.586262e-01   p_joint 2.722330e-03

Joint ci ratio: 6.882394e-02	ci left: 3.002569e-03	ci right 3.217520e-03	k: 3233	n:1040000
Cons ci ratio: 5.140207e-03	ci left: 3.577282e-01	ci right 3.595726e-01	k: 372996	n:1040000
KS ci ratio: 1.172791e-01	ci left: 1.010133e-03	ci right 1.136903e-03	k: 1115	n:1040000
EMR2   1040000 perm   631 sec   (1649 perm/sec)   p_kst 1.072115e-03   p_cons 3.586500e-01   p_joint 3.108654e-03

Joint ci ratio: 6.854911e-02	ci left: 2.998310e-03	ci right 3.212065e-03	k: 3259	n:1050000
Cons ci ratio: 5.115857e-03	ci left: 3.577159e-01	ci right 3.595515e-01	k: 376565	n:1050000
KS ci ratio: 1.168091e-01	ci left: 1.008833e-03	ci right 1.134898e-03	k: 1124	n:1050000
EMR2   1050000 perm   641 sec   (1639 perm/sec)   p_kst 1.070476e-03   p_cons 3.586333e-01   p_joint 3.103810e-03

Joint ci ratio: 6.819432e-02	ci left: 3.001551e-03	ci right 3.214386e-03	k: 3293	n:1060000
Cons ci ratio: 5.092152e-03	ci left: 3.576766e-01	ci right 3.595035e-01	k: 380105	n:1060000
KS ci ratio: 1.159361e-01	ci left: 1.014887e-03	ci right 1.140695e-03	k: 1141	n:1060000
EMR2   1060000 perm   651 sec   (1629 perm/sec)   p_kst 1.076415e-03   p_cons 3.585896e-01   p_joint 3.106604e-03

Joint ci ratio: 6.840393e-02	ci left: 2.955125e-03	ci right 3.165337e-03	k: 3273	n:1070000
Cons ci ratio: 5.067693e-03	ci left: 3.577360e-01	ci right 3.595544e-01	k: 383750	n:1070000
KS ci ratio: 1.153817e-01	ci left: 1.015385e-03	ci right 1.140612e-03	k: 1152	n:1070000
EMR2   1070000 perm   661 sec   (1619 perm/sec)   p_kst 1.076636e-03   p_cons 3.586449e-01   p_joint 3.058879e-03

Joint ci ratio: 6.849941e-02	ci left: 2.919570e-03	ci right 3.127554e-03	k: 3264	n:1080000
Cons ci ratio: 5.044090e-03	ci left: 3.577482e-01	ci right 3.595581e-01	k: 387345	n:1080000
KS ci ratio: 1.148847e-01	ci left: 1.014976e-03	ci right 1.139577e-03	k: 1162	n:1080000
EMR2   1080000 perm   671 sec   (1609 perm/sec)   p_kst 1.075926e-03   p_cons 3.586528e-01   p_joint 3.022222e-03

Joint ci ratio: 6.866933e-02	ci left: 2.878355e-03	ci right 3.083933e-03	k: 3248	n:1090000
Cons ci ratio: 5.021095e-03	ci left: 3.577344e-01	ci right 3.595361e-01	k: 390912	n:1090000
KS ci ratio: 1.142964e-01	ci left: 1.016357e-03	ci right 1.140447e-03	k: 1174	n:1090000
EMR2   1090000 perm   681 sec   (1600 perm/sec)   p_kst 1.077064e-03   p_cons 3.586349e-01   p_joint 2.979817e-03

Joint ci ratio: 6.833357e-02	ci left: 2.880781e-03	ci right 3.085486e-03	k: 3280	n:1100000
Cons ci ratio: 4.998282e-03	ci left: 3.577328e-01	ci right 3.595262e-01	k: 394492	n:1100000
KS ci ratio: 1.138613e-01	ci left: 1.015066e-03	ci right 1.138494e-03	k: 1183	n:1100000
EMR2   1100000 perm   692 sec   (1590 perm/sec)   p_kst 1.075455e-03   p_cons 3.586291e-01   p_joint 2.981818e-03

Joint ci ratio: 6.864999e-02	ci left: 2.828262e-03	ci right 3.030202e-03	k: 3250	n:1110000
Cons ci ratio: 4.975651e-03	ci left: 3.577428e-01	ci right 3.595282e-01	k: 398085	n:1110000
KS ci ratio: 1.133835e-01	ci left: 1.014674e-03	ci right 1.137502e-03	k: 1193	n:1110000
EMR2   1110000 perm   702 sec   (1581 perm/sec)   p_kst 1.074775e-03   p_cons 3.586351e-01   p_joint 2.927928e-03

Joint ci ratio: 7.176152e-02	ci left: 2.561769e-03	ci right 2.753317e-03	k: 2975	n:1120000
Cons ci ratio: 4.953632e-03	ci left: 3.577242e-01	ci right 3.595015e-01	k: 401646	n:1120000
KS ci ratio: 1.127712e-01	ci left: 1.016894e-03	ci right 1.139281e-03	k: 1206	n:1120000
EMR2   1120000 perm   713 sec   (1571 perm/sec)   p_kst 1.076786e-03   p_cons 3.586125e-01   p_joint 2.656250e-03

Joint ci ratio: 7.139052e-02	ci left: 2.566041e-03	ci right 2.756876e-03	k: 3006	n:1130000
Cons ci ratio: 4.931562e-03	ci left: 3.577378e-01	ci right 3.595072e-01	k: 405243	n:1130000
KS ci ratio: 1.120308e-01	ci left: 1.021656e-03	ci right 1.143756e-03	k: 1222	n:1130000
EMR2   1130000 perm   724 sec   (1562 perm/sec)   p_kst 1.081416e-03   p_cons 3.586221e-01   p_joint 2.660177e-03

Joint ci ratio: 7.109564e-02	ci left: 2.565071e-03	ci right 2.755013e-03	k: 3031	n:1140000
Cons ci ratio: 4.910083e-03	ci left: 3.577231e-01	ci right 3.594847e-01	k: 408808	n:1140000
KS ci ratio: 1.115304e-01	ci left: 1.022074e-03	ci right 1.143642e-03	k: 1233	n:1140000
EMR2   1140000 perm   734 sec   (1552 perm/sec)   p_kst 1.081579e-03   p_cons 3.586035e-01   p_joint 2.658772e-03

Joint ci ratio: 7.108471e-02	ci left: 2.543620e-03	ci right 2.731943e-03	k: 3032	n:1150000
Cons ci ratio: 4.888744e-03	ci left: 3.577216e-01	ci right 3.594756e-01	k: 412388	n:1150000
KS ci ratio: 1.111259e-01	ci left: 1.020794e-03	ci right 1.141741e-03	k: 1242	n:1150000
EMR2   1150000 perm   745 sec   (1544 perm/sec)   p_kst 1.080000e-03   p_cons 3.585983e-01   p_joint 2.636522e-03

Joint ci ratio: 7.233978e-02	ci left: 2.433639e-03	ci right 2.617135e-03	k: 2928	n:1160000
Cons ci ratio: 4.867827e-03	ci left: 3.577065e-01	ci right 3.594528e-01	k: 415952	n:1160000
KS ci ratio: 1.106817e-01	ci left: 1.020376e-03	ci right 1.140758e-03	k: 1252	n:1160000
EMR2   1160000 perm   756 sec   (1535 perm/sec)   p_kst 1.079310e-03   p_cons 3.585793e-01   p_joint 2.524138e-03

Joint ci ratio: 7.204526e-02	ci left: 2.432981e-03	ci right 2.615649e-03	k: 2952	n:1170000
Cons ci ratio: 4.846483e-03	ci left: 3.577574e-01	ci right 3.594963e-01	k: 419593	n:1170000
KS ci ratio: 1.104618e-01	ci left: 1.015810e-03	ci right 1.135400e-03	k: 1257	n:1170000
EMR2   1170000 perm   767 sec   (1525 perm/sec)   p_kst 1.074359e-03   p_cons 3.586265e-01   p_joint 2.523077e-03

Joint ci ratio: 7.183902e-02	ci left: 2.426510e-03	ci right 2.608149e-03	k: 2969	n:1180000
Cons ci ratio: 4.826412e-03	ci left: 3.577126e-01	ci right 3.594440e-01	k: 423122	n:1180000
KS ci ratio: 1.098953e-01	ci left: 1.017915e-03	ci right 1.137099e-03	k: 1270	n:1180000
EMR2   1180000 perm   778 sec   (1516 perm/sec)   p_kst 1.076271e-03   p_cons 3.585780e-01   p_joint 2.516102e-03

Joint ci ratio: 7.152660e-02	ci left: 2.427576e-03	ci right 2.608472e-03	k: 2995	n:1190000
Cons ci ratio: 4.805606e-03	ci left: 3.577626e-01	ci right 3.594868e-01	k: 426763	n:1190000
KS ci ratio: 1.093801e-01	ci left: 1.019168e-03	ci right 1.137904e-03	k: 1282	n:1190000
EMR2   1190000 perm   790 sec   (1507 perm/sec)   p_kst 1.077311e-03   p_cons 3.586244e-01   p_joint 2.516807e-03

Joint ci ratio: 7.121822e-02	ci left: 2.428627e-03	ci right 2.608788e-03	k: 3021	n:1200000
Cons ci ratio: 4.785664e-03	ci left: 3.577543e-01	ci right 3.594713e-01	k: 430335	n:1200000
KS ci ratio: 1.089563e-01	ci left: 1.018781e-03	ci right 1.136982e-03	k: 1292	n:1200000
EMR2   1200000 perm   801 sec   (1499 perm/sec)   p_kst 1.076667e-03   p_cons 3.586125e-01   p_joint 2.517500e-03

Joint ci ratio: 7.114819e-02	ci left: 2.413425e-03	ci right 2.592275e-03	k: 3027	n:1210000
Cons ci ratio: 4.765960e-03	ci left: 3.577471e-01	ci right 3.594569e-01	k: 433908	n:1210000
KS ci ratio: 1.088305e-01	ci left: 1.012773e-03	ci right 1.130132e-03	k: 1295	n:1210000
EMR2   1210000 perm   812 sec   (1490 perm/sec)   p_kst 1.070248e-03   p_cons 3.586017e-01   p_joint 2.501653e-03

Joint ci ratio: 7.087957e-02	ci left: 2.412161e-03	ci right 2.590214e-03	k: 3050	n:1220000
Cons ci ratio: 4.746244e-03	ci left: 3.577645e-01	ci right 3.594673e-01	k: 437511	n:1220000
KS ci ratio: 1.084131e-01	ci left: 1.012445e-03	ci right 1.129288e-03	k: 1305	n:1220000
EMR2   1220000 perm   823 sec   (1482 perm/sec)   p_kst 1.069672e-03   p_cons 3.586156e-01   p_joint 2.500000e-03

Joint ci ratio: 7.060245e-02	ci left: 2.411717e-03	ci right 2.589013e-03	k: 3074	n:1230000
Cons ci ratio: 4.726553e-03	ci left: 3.578028e-01	ci right 3.594987e-01	k: 441140	n:1230000
KS ci ratio: 1.078365e-01	ci left: 1.015289e-03	ci right 1.131797e-03	k: 1319	n:1230000
EMR2   1230000 perm   835 sec   (1474 perm/sec)   p_kst 1.072358e-03   p_cons 3.586504e-01   p_joint 2.499187e-03

Joint ci ratio: 7.442478e-02	ci left: 2.149162e-03	ci right 2.316080e-03	k: 2767	n:1240000
Cons ci ratio: 4.707245e-03	ci left: 3.578267e-01	ci right 3.595159e-01	k: 444752	n:1240000
KS ci ratio: 1.073093e-01	ci left: 1.017303e-03	ci right 1.133435e-03	k: 1332	n:1240000
EMR2   1240000 perm   846 sec   (1466 perm/sec)   p_kst 1.074194e-03   p_cons 3.586710e-01   p_joint 2.231452e-03

Joint ci ratio: 7.445241e-02	ci left: 2.130397e-03	ci right 2.295923e-03	k: 2765	n:1250000
Cons ci ratio: 4.688360e-03	ci left: 3.578319e-01	ci right 3.595143e-01	k: 448341	n:1250000
KS ci ratio: 1.069888e-01	ci left: 1.015393e-03	ci right 1.130939e-03	k: 1340	n:1250000
EMR2   1250000 perm   858 sec   (1458 perm/sec)   p_kst 1.072000e-03   p_cons 3.586728e-01   p_joint 2.212000e-03

Joint ci ratio: 7.413144e-02	ci left: 2.132183e-03	ci right 2.297102e-03	k: 2789	n:1260000
Cons ci ratio: 4.669273e-03	ci left: 3.578791e-01	ci right 3.595548e-01	k: 451983	n:1260000
KS ci ratio: 1.065527e-01	ci left: 1.015831e-03	ci right 1.130927e-03	k: 1351	n:1260000
EMR2   1260000 perm   869 sec   (1450 perm/sec)   p_kst 1.072222e-03   p_cons 3.587167e-01   p_joint 2.213492e-03

Joint ci ratio: 7.430578e-02	ci left: 2.105347e-03	ci right 2.268590e-03	k: 2776	n:1270000
Cons ci ratio: 4.650760e-03	ci left: 3.578918e-01	ci right 3.595609e-01	k: 455582	n:1270000
KS ci ratio: 1.063957e-01	ci left: 1.010898e-03	ci right 1.125255e-03	k: 1355	n:1270000
EMR2   1270000 perm   881 sec   (1442 perm/sec)   p_kst 1.066929e-03   p_cons 3.587260e-01   p_joint 2.185827e-03

Joint ci ratio: 7.398670e-02	ci left: 2.107302e-03	ci right 2.269964e-03	k: 2800	n:1280000
Cons ci ratio: 4.632299e-03	ci left: 3.579206e-01	ci right 3.595832e-01	k: 459202	n:1280000
KS ci ratio: 1.060056e-01	ci left: 1.010605e-03	ci right 1.124484e-03	k: 1365	n:1280000
EMR2   1280000 perm   893 sec   (1434 perm/sec)   p_kst 1.066406e-03   p_cons 3.587516e-01   p_joint 2.187500e-03

Joint ci ratio: 7.376333e-02	ci left: 2.103901e-03	ci right 2.265789e-03	k: 2817	n:1290000
Cons ci ratio: 4.614306e-03	ci left: 3.579242e-01	ci right 3.595803e-01	k: 462790	n:1290000
KS ci ratio: 1.056197e-01	ci left: 1.010318e-03	ci right 1.123724e-03	k: 1375	n:1290000
EMR2   1290000 perm   905 sec   (1426 perm/sec)   p_kst 1.065891e-03   p_cons 3.587519e-01   p_joint 2.183721e-03

Joint ci ratio: 6.730837e-02	ci left: 2.514700e-03	ci right 2.690605e-03	k: 3382	n:1300000
Cons ci ratio: 4.596398e-03	ci left: 3.579400e-01	ci right 3.595898e-01	k: 466394	n:1300000
KS ci ratio: 1.058901e-01	ci left: 9.973037e-04	ci right 1.109554e-03	k: 1368	n:1300000
EMR2   1300000 perm   917 sec   (1418 perm/sec)   p_kst 1.052308e-03   p_cons 3.587646e-01   p_joint 2.601538e-03

Joint ci ratio: 6.707093e-02	ci left: 2.513516e-03	ci right 2.688695e-03	k: 3406	n:1310000
Cons ci ratio: 4.579023e-03	ci left: 3.579229e-01	ci right 3.595663e-01	k: 469955	n:1310000
KS ci ratio: 1.054672e-01	ci left: 9.978657e-04	ci right 1.109703e-03	k: 1379	n:1310000
EMR2   1310000 perm   929 sec   (1411 perm/sec)   p_kst 1.052672e-03   p_cons 3.587443e-01   p_joint 2.600000e-03

Joint ci ratio: 6.677748e-02	ci left: 2.516821e-03	ci right 2.691433e-03	k: 3436	n:1320000
Cons ci ratio: 4.561138e-03	ci left: 3.579771e-01	ci right 3.596144e-01	k: 473610	n:1320000
KS ci ratio: 1.051629e-01	ci left: 9.962070e-04	ci right 1.107516e-03	k: 1387	n:1320000
EMR2   1320000 perm   941 sec   (1403 perm/sec)   p_kst 1.050758e-03   p_cons 3.587955e-01   p_joint 2.603030e-03

Joint ci ratio: 6.669064e-02	ci left: 2.504551e-03	ci right 2.678077e-03	k: 3445	n:1330000
Cons ci ratio: 4.543847e-03	ci left: 3.579915e-01	ci right 3.596226e-01	k: 477213	n:1330000
KS ci ratio: 1.046738e-01	ci left: 9.982347e-04	ci right 1.109220e-03	k: 1400	n:1330000
EMR2   1330000 perm   953 sec   (1396 perm/sec)   p_kst 1.052632e-03   p_cons 3.588068e-01   p_joint 2.590226e-03

Joint ci ratio: 6.666221e-02	ci left: 2.488062e-03	ci right 2.660368e-03	k: 3448	n:1340000
Cons ci ratio: 4.526656e-03	ci left: 3.580154e-01	ci right 3.596404e-01	k: 480829	n:1340000
KS ci ratio: 1.039342e-01	ci left: 1.005321e-03	ci right 1.116256e-03	k: 1420	n:1340000
EMR2   1340000 perm   966 sec   (1388 perm/sec)   p_kst 1.059701e-03   p_cons 3.588276e-01   p_joint 2.573134e-03

Joint ci ratio: 6.348446e-02	ci left: 2.726871e-03	ci right 2.906384e-03	k: 3801	n:1350000
Cons ci ratio: 4.510144e-03	ci left: 3.579893e-01	ci right 3.596083e-01	k: 484378	n:1350000
KS ci ratio: 1.034258e-01	ci left: 1.007976e-03	ci right 1.118627e-03	k: 1434	n:1350000
EMR2   1350000 perm   978 sec   (1380 perm/sec)   p_kst 1.062222e-03   p_cons 3.587985e-01   p_joint 2.815556e-03

Joint ci ratio: 6.372931e-02	ci left: 2.685834e-03	ci right 2.863352e-03	k: 3772	n:1360000
Cons ci ratio: 4.493432e-03	ci left: 3.580026e-01	ci right 3.596156e-01	k: 487980	n:1360000
KS ci ratio: 1.031031e-01	ci left: 1.007011e-03	ci right 1.117190e-03	k: 1443	n:1360000
EMR2   1360000 perm   991 sec   (1373 perm/sec)   p_kst 1.061029e-03   p_cons 3.588088e-01   p_joint 2.773529e-03

Joint ci ratio: 6.348577e-02	ci left: 2.687061e-03	ci right 2.863957e-03	k: 3801	n:1370000
Cons ci ratio: 4.477337e-03	ci left: 3.579712e-01	ci right 3.595783e-01	k: 491521	n:1370000
KS ci ratio: 1.028542e-01	ci left: 1.004639e-03	ci right 1.114277e-03	k: 1450	n:1370000
EMR2   1370000 perm   1003 sec   (1366 perm/sec)   p_kst 1.058394e-03   p_cons 3.587745e-01   p_joint 2.774453e-03

Joint ci ratio: 6.337785e-02	ci left: 2.676860e-03	ci right 2.852773e-03	k: 3814	n:1380000
Cons ci ratio: 4.460978e-03	ci left: 3.579852e-01	ci right 3.595864e-01	k: 495124	n:1380000
KS ci ratio: 1.025368e-01	ci left: 1.003713e-03	ci right 1.112891e-03	k: 1459	n:1380000
EMR2   1380000 perm   1015 sec   (1359 perm/sec)   p_kst 1.057246e-03   p_cons 3.587855e-01   p_joint 2.763768e-03

Joint ci ratio: 6.314654e-02	ci left: 2.677427e-03	ci right 2.852712e-03	k: 3842	n:1390000
Cons ci ratio: 4.445200e-03	ci left: 3.579573e-01	ci right 3.595527e-01	k: 498669	n:1390000
KS ci ratio: 1.021874e-01	ci left: 1.003502e-03	ci right 1.112263e-03	k: 1469	n:1390000
EMR2   1390000 perm   1028 sec   (1352 perm/sec)   p_kst 1.056835e-03   p_cons 3.587547e-01   p_joint 2.764029e-03

Joint ci ratio: 6.291774e-02	ci left: 2.677988e-03	ci right 2.852651e-03	k: 3870	n:1400000
Cons ci ratio: 4.429039e-03	ci left: 3.579868e-01	ci right 3.595766e-01	k: 502294	n:1400000
KS ci ratio: 1.017728e-01	ci left: 1.004687e-03	ci right 1.113108e-03	k: 1481	n:1400000
EMR2   1400000 perm   1040 sec   (1346 perm/sec)   p_kst 1.057857e-03   p_cons 3.587814e-01   p_joint 2.764286e-03

Joint ci ratio: 6.271560e-02	ci left: 2.676447e-03	ci right 2.850428e-03	k: 3895	n:1410000
Cons ci ratio: 4.414134e-03	ci left: 3.579033e-01	ci right 3.594873e-01	k: 505760	n:1410000
KS ci ratio: 1.014653e-01	ci left: 1.003782e-03	ci right 1.111759e-03	k: 1490	n:1410000
EMR2   1410000 perm   1053 sec   (1339 perm/sec)   p_kst 1.056738e-03   p_cons 3.586950e-01   p_joint 2.762411e-03

Joint ci ratio: 6.245155e-02	ci left: 2.680474e-03	ci right 2.853958e-03	k: 3928	n:1420000
Cons ci ratio: 4.399008e-03	ci left: 3.578597e-01	ci right 3.594381e-01	k: 509281	n:1420000
KS ci ratio: 1.010930e-01	ci left: 1.004264e-03	ci right 1.111873e-03	k: 1501	n:1420000
EMR2   1420000 perm   1066 sec   (1332 perm/sec)   p_kst 1.057042e-03   p_cons 3.586486e-01   p_joint 2.766197e-03

Joint ci ratio: 6.235674e-02	ci left: 2.669990e-03	ci right 2.842523e-03	k: 3940	n:1430000
Cons ci ratio: 4.383383e-03	ci left: 3.578852e-01	ci right 3.594580e-01	k: 512900	n:1430000
KS ci ratio: 1.006583e-01	ci left: 1.006102e-03	ci right 1.113417e-03	k: 1514	n:1430000
EMR2   1430000 perm   1079 sec   (1326 perm/sec)   p_kst 1.058741e-03   p_cons 3.586713e-01   p_joint 2.755245e-03

Joint ci ratio: 6.214424e-02	ci left: 2.669907e-03	ci right 2.841825e-03	k: 3967	n:1440000
Cons ci ratio: 4.368227e-03	ci left: 3.578784e-01	ci right 3.594458e-01	k: 516473	n:1440000
KS ci ratio: 1.001963e-01	ci left: 1.008594e-03	ci right 1.115652e-03	k: 1528	n:1440000
EMR2   1440000 perm   1092 sec   (1319 perm/sec)   p_kst 1.061111e-03   p_cons 3.586618e-01   p_joint 2.754861e-03

Joint ci ratio: 6.197280e-02	ci left: 2.666430e-03	ci right 2.837634e-03	k: 3989	n:1450000
Cons ci ratio: 4.353625e-03	ci left: 3.578297e-01	ci right 3.593916e-01	k: 519985	n:1450000
KS ci ratio: 1.000657e-01	ci left: 1.004327e-03	ci right 1.110785e-03	k: 1532	n:1450000
EMR2   1450000 perm   1104 sec   (1313 perm/sec)   p_kst 1.056552e-03   p_cons 3.586103e-01   p_joint 2.751034e-03

Joint ci ratio: 6.198117e-02	ci left: 2.647492e-03	ci right 2.817504e-03	k: 3988	n:1460000
Cons ci ratio: 4.338322e-03	ci left: 3.578713e-01	ci right 3.594279e-01	k: 523628	n:1460000
KS ci ratio: 9.967627e-02	ci left: 1.005462e-03	ci right 1.111601e-03	k: 1544	n:1460000
EMR2   1460000 perm   1117 sec   (1307 perm/sec)   p_kst 1.057534e-03   p_cons 3.586493e-01   p_joint 2.731507e-03

Outputting figure to mutsig2_images.part000000000056/EMR2.4_2552_1460000_0.0010575_0.35865_0.0027315.png
                gene_name: EMR2
               theta_stop: 0.100 
                    nperm: 1460000 
                     p_ks: 0.0011 
        ci_ks_bounds_left: 0.0010 
       ci_ks_bounds_right: 0.0011 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.0027 
     ci_joint_bounds_left: 0.0026 
    ci_joint_bounds_right: 0.0028 

Current progress: 33 percent done.
EIF4G2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.799080e-02	ci left: 3.904780e-01	ci right 4.097802e-01	k: 4001	n:10000
Cons ci ratio: 2.899040e-02	ci left: 6.369381e-01	ci right 6.557766e-01	k: 6464	n:10000
KS ci ratio: 7.852074e-02	ci left: 1.916074e-01	ci right 2.073681e-01	k: 1994	n:10000
EIF4G2   10000 perm   2 sec   (5638 perm/sec)   p_kst 1.994000e-01   p_cons 6.464000e-01   p_joint 4.001000e-01

Outputting figure to mutsig2_images.part000000000056/EIF4G2.3_2808_10000_0.1994_0.6464_0.4001.png
                gene_name: EIF4G2
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 35 percent done.
EIF5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.569767e-02	ci left: 6.903061e-01	ci right 7.083777e-01	k: 6994	n:10000
KS ci ratio: 3.642336e-02	ci left: 5.267670e-01	ci right 5.464117e-01	k: 5366	n:10000
EIF5   10000 perm   2 sec   (6332 perm/sec)   p_kst 5.366000e-01   p_cons 6.994000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000056/EIF5.3_1336_10000_0.5366_0.6994_1.png
                gene_name: EIF5
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 37 percent done.
ELAVL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.614789e-03	ci left: 9.689983e-01	ci right 9.755227e-01	k: 9724	n:10000
KS ci ratio: 2.038770e-02	ci left: 7.789437e-01	ci right 7.950888e-01	k: 7871	n:10000
ELAVL2   10000 perm   2 sec   (6288 perm/sec)   p_kst 7.871000e-01   p_cons 9.724000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000056/ELAVL2.3_1104_10000_0.7871_0.9724_1.png
                gene_name: ELAVL2
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 40 percent done.
ELF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.590609e-02	ci left: 3.202883e-01	ci right 3.388111e-01	k: 3295	n:10000
Cons ci ratio: 1.019010e-01	ci left: 1.222933e-01	ci right 1.355237e-01	k: 1288	n:10000
KS ci ratio: 2.614451e-02	ci left: 6.829473e-01	ci right 7.011407e-01	k: 6921	n:10000
ELF1   10000 perm   2 sec   (6117 perm/sec)   p_kst 6.921000e-01   p_cons 1.288000e-01   p_joint 3.295000e-01

Joint ci ratio: 2.969952e-02	ci left: 4.585674e-01	ci right 4.724426e-01	k: 9310	n:20000
Cons ci ratio: 7.134306e-02	ci left: 1.264513e-01	ci right 1.358562e-01	k: 2622	n:20000
KS ci ratio: 1.889412e-02	ci left: 6.762487e-01	ci right 6.891981e-01	k: 13655	n:20000
ELF1   20000 perm   4 sec   (5443 perm/sec)   p_kst 6.827500e-01   p_cons 1.311000e-01   p_joint 4.655000e-01

Outputting figure to mutsig2_images.part000000000056/ELF1.3_1892_20000_0.68275_0.1311_0.4655.png
                gene_name: ELF1
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.47 

Current progress: 42 percent done.
ELF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.452535e-02	ci left: 1.694660e-01	ci right 1.845227e-01	k: 1769	n:10000
Cons ci ratio: 2.234819e-02	ci left: 7.461435e-01	ci right 7.631079e-01	k: 7547	n:10000
KS ci ratio: 1.424392e-01	ci left: 6.536500e-02	ci right 7.548697e-02	k: 703	n:10000
ELF4   10000 perm   2 sec   (6075 perm/sec)   p_kst 7.030000e-02   p_cons 7.547000e-01   p_joint 1.769000e-01

Joint ci ratio: 4.899612e-02	ci left: 2.364737e-01	ci right 2.484013e-01	k: 4848	n:20000
Cons ci ratio: 1.542699e-02	ci left: 7.575478e-01	ci right 7.693755e-01	k: 15270	n:20000
KS ci ratio: 9.925096e-02	ci left: 6.874809e-02	ci right 7.597683e-02	k: 1446	n:20000
ELF4   20000 perm   4 sec   (5428 perm/sec)   p_kst 7.230000e-02   p_cons 7.635000e-01   p_joint 2.424000e-01

Outputting figure to mutsig2_images.part000000000056/ELF4.3_2024_20000_0.0723_0.7635_0.2424.png
                gene_name: ELF4
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.076 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 44 percent done.
ELL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.248709e-02	ci left: 2.734923e-01	ci right 2.912347e-01	k: 2823	n:10000
Cons ci ratio: 3.051687e-02	ci left: 6.130147e-01	ci right 6.321138e-01	k: 6226	n:10000
KS ci ratio: 8.000136e-02	ci left: 1.857974e-01	ci right 2.013815e-01	k: 1935	n:10000
ELL   10000 perm   2 sec   (5959 perm/sec)   p_kst 1.935000e-01   p_cons 6.226000e-01   p_joint 2.823000e-01

Outputting figure to mutsig2_images.part000000000056/ELL.3_1914_10000_0.1935_0.6226_0.2823.png
                gene_name: ELL
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 47 percent done.
ELMOD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.624881e-02	ci left: 6.812340e-01	ci right 6.994550e-01	k: 6904	n:10000
KS ci ratio: 2.212491e-02	ci left: 7.498858e-01	ci right 7.667635e-01	k: 7584	n:10000
ELMOD1   10000 perm   2 sec   (6314 perm/sec)   p_kst 7.584000e-01   p_cons 6.904000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000056/ELMOD1.3_1049_10000_0.7584_0.6904_1.png
                gene_name: ELMOD1
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 49 percent done.
ELN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.810217e-02	ci left: 3.036194e-01	ci right 3.218898e-01	k: 3127	n:10000
Cons ci ratio: 7.254263e-02	ci left: 2.177347e-01	ci right 2.342252e-01	k: 2259	n:10000
KS ci ratio: 6.550165e-02	ci left: 2.549845e-01	ci right 2.723533e-01	k: 2636	n:10000
ELN   10000 perm   2 sec   (6284 perm/sec)   p_kst 2.636000e-01   p_cons 2.259000e-01   p_joint 3.127000e-01

Outputting figure to mutsig2_images.part000000000056/ELN.3_2322_10000_0.2636_0.2259_0.3127.png
                gene_name: ELN
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 51 percent done.
ELOVL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.291978e-02	ci left: 3.448197e-01	ci right 3.636653e-01	k: 3542	n:10000
Cons ci ratio: 2.115267e-01	ci left: 2.968021e-02	ci right 3.679509e-02	k: 331	n:10000
KS ci ratio: 2.730395e-02	ci left: 6.640082e-01	ci right 6.824908e-01	k: 6733	n:10000
ELOVL3   10000 perm   2 sec   (6343 perm/sec)   p_kst 6.733000e-01   p_cons 3.310000e-02   p_joint 3.542000e-01

Joint ci ratio: 6.180551e-02	ci left: 1.622496e-01	ci right 1.726473e-01	k: 3348	n:20000
Cons ci ratio: 1.565382e-01	ci left: 2.801598e-02	ci right 3.282183e-02	k: 607	n:20000
KS ci ratio: 1.899231e-02	ci left: 6.739869e-01	ci right 6.869606e-01	k: 13610	n:20000
ELOVL3   20000 perm   4 sec   (5544 perm/sec)   p_kst 6.805000e-01   p_cons 3.035000e-02   p_joint 1.674000e-01

Joint ci ratio: 5.097393e-02	ci left: 1.604528e-01	ci right 1.688789e-01	k: 4939	n:30000
Cons ci ratio: 1.300365e-01	ci left: 2.748520e-02	ci right 3.133998e-02	k: 881	n:30000
KS ci ratio: 1.556918e-02	ci left: 6.734489e-01	ci right 6.840498e-01	k: 20363	n:30000
ELOVL3   30000 perm   6 sec   (5306 perm/sec)   p_kst 6.787667e-01   p_cons 2.936667e-02   p_joint 1.646333e-01

Joint ci ratio: 3.407299e-02	ci left: 2.443704e-01	ci right 2.528662e-01	k: 9944	n:40000
Cons ci ratio: 1.117373e-01	ci left: 2.817971e-02	ci right 3.153900e-02	k: 1193	n:40000
KS ci ratio: 1.352875e-02	ci left: 6.726932e-01	ci right 6.818810e-01	k: 27092	n:40000
ELOVL3   40000 perm   8 sec   (5118 perm/sec)   p_kst 6.773000e-01   p_cons 2.982500e-02   p_joint 2.486000e-01

Joint ci ratio: 3.218692e-02	ci left: 2.250841e-01	ci right 2.324674e-01	k: 11438	n:50000
Cons ci ratio: 9.968326e-02	ci left: 2.850258e-02	ci right 3.151231e-02	k: 1499	n:50000
KS ci ratio: 1.207451e-02	ci left: 6.741251e-01	ci right 6.823342e-01	k: 33912	n:50000
ELOVL3   50000 perm   10 sec   (5002 perm/sec)   p_kst 6.782400e-01   p_cons 2.998000e-02   p_joint 2.287600e-01

Outputting figure to mutsig2_images.part000000000056/ELOVL3.3_829_50000_0.67824_0.02998_0.22876.png
                gene_name: ELOVL3
               theta_stop: 0.100 
                    nperm: 50000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.030 
      ci_cons_bounds_left: 0.029 
     ci_cons_bounds_right: 0.032 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.23 

Current progress: 53 percent done.
ELP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.276662e-02	ci left: 1.444270e-01	ci right 1.585767e-01	k: 1514	n:10000
Cons ci ratio: 1.426573e-01	ci left: 6.517166e-02	ci right 7.528044e-02	k: 701	n:10000
KS ci ratio: 5.924317e-02	ci left: 2.953892e-01	ci right 3.135248e-01	k: 3044	n:10000
ELP2   10000 perm   2 sec   (5712 perm/sec)   p_kst 3.044000e-01   p_cons 7.010000e-02   p_joint 1.514000e-01

Joint ci ratio: 7.323477e-02	ci left: 1.206923e-01	ci right 1.299169e-01	k: 2505	n:20000
Cons ci ratio: 1.022134e-01	ci left: 6.498828e-02	ci right 7.203779e-02	k: 1369	n:20000
KS ci ratio: 4.196567e-02	ci left: 2.973308e-01	ci right 3.101263e-01	k: 6074	n:20000
ELP2   20000 perm   4 sec   (5153 perm/sec)   p_kst 3.037000e-01   p_cons 6.845000e-02   p_joint 1.252500e-01

Joint ci ratio: 6.805948e-02	ci left: 9.616785e-02	ci right 1.029766e-01	k: 2986	n:30000
Cons ci ratio: 8.190635e-02	ci left: 6.802068e-02	ci right 7.386274e-02	k: 2127	n:30000
KS ci ratio: 3.437997e-02	ci left: 2.971058e-01	ci right 3.075325e-01	k: 9069	n:30000
ELP2   30000 perm   6 sec   (4964 perm/sec)   p_kst 3.023000e-01   p_cons 7.090000e-02   p_joint 9.953333e-02

Outputting figure to mutsig2_images.part000000000056/ELP2.3_2569_30000_0.3023_0.0709_0.099533.png
                gene_name: ELP2
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.071 
      ci_cons_bounds_left: 0.068 
     ci_cons_bounds_right: 0.074 
                  p_joint: 0.100 
     ci_joint_bounds_left: 0.096 
    ci_joint_bounds_right: 0.10 

Current progress: 56 percent done.
EME1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.935079e-02	ci left: 1.541405e-01	ci right 1.686573e-01	k: 1613	n:10000
Cons ci ratio: 9.371625e-02	ci left: 1.418777e-01	ci right 1.559275e-01	k: 1488	n:10000
KS ci ratio: 5.158221e-02	ci left: 3.565488e-01	ci right 3.755293e-01	k: 3660	n:10000
EME1   10000 perm   1 sec   (6678 perm/sec)   p_kst 3.660000e-01   p_cons 1.488000e-01   p_joint 1.613000e-01

Outputting figure to mutsig2_images.part000000000056/EME1.3_1784_10000_0.366_0.1488_0.1613.png
                gene_name: EME1
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.17 

Current progress: 58 percent done.
EMILIN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.581162e-01	ci left: 5.330545e-02	ci right 6.255418e-02	k: 578	n:10000
Cons ci ratio: 2.223957e-02	ci left: 7.479640e-01	ci right 7.648864e-01	k: 7565	n:10000
KS ci ratio: 3.376227e-01	ci left: 1.105573e-02	ci right 1.563427e-02	k: 132	n:10000
EMILIN2   10000 perm   2 sec   (5460 perm/sec)   p_kst 1.320000e-02   p_cons 7.565000e-01   p_joint 5.780000e-02

Joint ci ratio: 8.326984e-02	ci left: 9.558124e-02	ci right 1.039355e-01	k: 1994	n:20000
Cons ci ratio: 1.566182e-02	ci left: 7.520020e-01	ci right 7.639229e-01	k: 15160	n:20000
KS ci ratio: 2.443899e-01	ci left: 1.114729e-02	ci right 1.429674e-02	k: 253	n:20000
EMILIN2   20000 perm   4 sec   (4932 perm/sec)   p_kst 1.265000e-02   p_cons 7.580000e-01   p_joint 9.970000e-02

Joint ci ratio: 8.718238e-02	ci left: 6.037437e-02	ci right 6.591060e-02	k: 1893	n:30000
Cons ci ratio: 1.309911e-02	ci left: 7.441200e-01	ci right 7.539650e-01	k: 22472	n:30000
KS ci ratio: 2.008844e-01	ci left: 1.127349e-02	ci right 1.382221e-02	k: 375	n:30000
EMILIN2   30000 perm   6 sec   (4738 perm/sec)   p_kst 1.250000e-02   p_cons 7.490667e-01   p_joint 6.310000e-02

Joint ci ratio: 8.207532e-02	ci left: 5.173146e-02	ci right 5.618357e-02	k: 2157	n:40000
Cons ci ratio: 1.132432e-02	ci left: 7.454495e-01	ci right 7.539643e-01	k: 29989	n:40000
KS ci ratio: 1.763621e-01	ci left: 1.112331e-02	ci right 1.329836e-02	k: 487	n:40000
EMILIN2   40000 perm   9 sec   (4608 perm/sec)   p_kst 1.217500e-02   p_cons 7.497250e-01   p_joint 5.392500e-02

Joint ci ratio: 7.864154e-02	ci left: 4.547527e-02	ci right 4.921751e-02	k: 2366	n:50000
Cons ci ratio: 1.009977e-02	ci left: 7.469841e-01	ci right 7.545868e-01	k: 37540	n:50000
KS ci ratio: 1.585347e-01	ci left: 1.112165e-02	ci right 1.305562e-02	k: 603	n:50000
EMILIN2   50000 perm   11 sec   (4497 perm/sec)   p_kst 1.206000e-02   p_cons 7.508000e-01   p_joint 4.732000e-02

Joint ci ratio: 7.967007e-02	ci left: 3.723608e-02	ci right 4.034207e-02	k: 2326	n:60000
Cons ci ratio: 9.266604e-03	ci left: 7.454099e-01	ci right 7.523661e-01	k: 44934	n:60000
KS ci ratio: 1.452094e-01	ci left: 1.112802e-02	ci right 1.288633e-02	k: 719	n:60000
EMILIN2   60000 perm   14 sec   (4406 perm/sec)   p_kst 1.198333e-02   p_cons 7.489000e-01   p_joint 3.876667e-02

Joint ci ratio: 6.954723e-02	ci left: 4.190239e-02	ci right 4.493560e-02	k: 3038	n:70000
Cons ci ratio: 8.580841e-03	ci left: 7.455984e-01	ci right 7.520381e-01	k: 52418	n:70000
KS ci ratio: 1.337148e-01	ci left: 1.131701e-02	ci right 1.295237e-02	k: 848	n:70000
EMILIN2   70000 perm   16 sec   (4324 perm/sec)   p_kst 1.211429e-02   p_cons 7.488286e-01   p_joint 4.340000e-02

Joint ci ratio: 6.341380e-02	ci left: 4.414002e-02	ci right 4.704305e-02	k: 3646	n:80000
Cons ci ratio: 8.012585e-03	ci left: 7.464696e-01	ci right 7.524873e-01	k: 59959	n:80000
KS ci ratio: 1.264908e-01	ci left: 1.111164e-02	ci right 1.262407e-02	k: 948	n:80000
EMILIN2   80000 perm   19 sec   (4247 perm/sec)   p_kst 1.185000e-02   p_cons 7.494875e-01   p_joint 4.557500e-02

Joint ci ratio: 5.877273e-02	ci left: 4.571402e-02	ci right 4.849304e-02	k: 4238	n:90000
Cons ci ratio: 7.529054e-03	ci left: 7.479047e-01	ci right 7.535680e-01	k: 67567	n:90000
KS ci ratio: 1.198045e-01	ci left: 1.105081e-02	ci right 1.246981e-02	k: 1057	n:90000
EMILIN2   90000 perm   22 sec   (4174 perm/sec)   p_kst 1.174444e-02   p_cons 7.507444e-01   p_joint 4.708889e-02

Joint ci ratio: 5.893235e-02	ci left: 4.111997e-02	ci right 4.362667e-02	k: 4236	n:100000
Cons ci ratio: 7.142965e-03	ci left: 7.480366e-01	ci right 7.534089e-01	k: 75073	n:100000
KS ci ratio: 1.142260e-01	ci left: 1.097469e-02	ci right 1.231386e-02	k: 1163	n:100000
EMILIN2   100000 perm   24 sec   (4108 perm/sec)   p_kst 1.163000e-02   p_cons 7.507300e-01   p_joint 4.236000e-02

Joint ci ratio: 5.349329e-02	ci left: 4.529899e-02	ci right 4.779772e-02	k: 5119	n:110000
Cons ci ratio: 6.811593e-03	ci left: 7.481050e-01	ci right 7.532272e-01	k: 82574	n:110000
KS ci ratio: 1.083721e-01	ci left: 1.111713e-02	ci right 1.239972e-02	k: 1292	n:110000
EMILIN2   110000 perm   27 sec   (4044 perm/sec)   p_kst 1.174545e-02   p_cons 7.506727e-01   p_joint 4.653636e-02

Joint ci ratio: 5.225697e-02	ci left: 4.361996e-02	ci right 4.596877e-02	k: 5374	n:120000
Cons ci ratio: 6.522290e-03	ci left: 7.481752e-01	ci right 7.530793e-01	k: 90076	n:120000
KS ci ratio: 1.043039e-01	ci left: 1.102618e-02	ci right 1.224759e-02	k: 1395	n:120000
EMILIN2   120000 perm   30 sec   (3983 perm/sec)   p_kst 1.162500e-02   p_cons 7.506333e-01   p_joint 4.478333e-02

Joint ci ratio: 5.223468e-02	ci left: 4.043742e-02	ci right 4.261386e-02	k: 5397	n:130000
Cons ci ratio: 6.268131e-03	ci left: 7.481692e-01	ci right 7.528812e-01	k: 97569	n:130000
KS ci ratio: 1.005602e-01	ci left: 1.097249e-02	ci right 1.214175e-02	k: 1501	n:130000
EMILIN2   130000 perm   33 sec   (3924 perm/sec)   p_kst 1.154615e-02   p_cons 7.505308e-01   p_joint 4.151538e-02

Joint ci ratio: 4.916480e-02	ci left: 4.236681e-02	ci right 4.450929e-02	k: 6080	n:140000
Cons ci ratio: 6.046841e-03	ci left: 7.478377e-01	ci right 7.523805e-01	k: 105016	n:140000
KS ci ratio: 9.685797e-02	ci left: 1.100384e-02	ci right 1.213081e-02	k: 1618	n:140000
EMILIN2   140000 perm   36 sec   (3867 perm/sec)   p_kst 1.155714e-02   p_cons 7.501143e-01   p_joint 4.342857e-02

Outputting figure to mutsig2_images.part000000000056/EMILIN2.3_3194_140000_0.011557_0.75011_0.043429.png
                gene_name: EMILIN2
               theta_stop: 0.097 
                    nperm: 140000 
                     p_ks: 0.012 
        ci_ks_bounds_left: 0.011 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.043 
     ci_joint_bounds_left: 0.042 
    ci_joint_bounds_right: 0.045 

Current progress: 60 percent done.
EMILIN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.474675e-02	ci left: 2.075736e-01	ci right 2.237924e-01	k: 2156	n:10000
Cons ci ratio: 1.765078e-01	ci left: 4.283864e-02	ci right 5.122777e-02	k: 469	n:10000
KS ci ratio: 2.580770e-02	ci left: 6.884913e-01	ci right 7.065935e-01	k: 6976	n:10000
EMILIN3   10000 perm   2 sec   (5826 perm/sec)   p_kst 6.976000e-01   p_cons 4.690000e-02   p_joint 2.156000e-01

Joint ci ratio: 6.022457e-02	ci left: 1.695095e-01	ci right 1.800852e-01	k: 3495	n:20000
Cons ci ratio: 1.317256e-01	ci left: 3.960069e-02	ci right 4.523332e-02	k: 847	n:20000
KS ci ratio: 1.816502e-02	ci left: 6.931426e-01	ci right 7.058994e-01	k: 13991	n:20000
EMILIN3   20000 perm   4 sec   (5216 perm/sec)   p_kst 6.995500e-01   p_cons 4.235000e-02   p_joint 1.747500e-01

Joint ci ratio: 5.462653e-02	ci left: 1.424834e-01	ci right 1.505185e-01	k: 4394	n:30000
Cons ci ratio: 1.080879e-01	ci left: 3.972548e-02	ci right 4.429709e-02	k: 1259	n:30000
KS ci ratio: 1.431544e-02	ci left: 7.090838e-01	ci right 7.193413e-01	k: 21427	n:30000
EMILIN3   30000 perm   6 sec   (4988 perm/sec)   p_kst 7.142333e-01   p_cons 4.196667e-02   p_joint 1.464667e-01

Joint ci ratio: 6.162059e-02	ci left: 8.903687e-02	ci right 9.472254e-02	k: 3674	n:40000
Cons ci ratio: 9.340425e-02	ci left: 4.020171e-02	ci right 4.416510e-02	k: 1686	n:40000
KS ci ratio: 1.240467e-02	ci left: 7.095436e-01	ci right 7.184253e-01	k: 28560	n:40000
EMILIN3   40000 perm   8 sec   (4833 perm/sec)   p_kst 7.140000e-01   p_cons 4.215000e-02   p_joint 9.185000e-02

Outputting figure to mutsig2_images.part000000000056/EMILIN3.3_2317_40000_0.714_0.04215_0.09185.png
                gene_name: EMILIN3
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.042 
      ci_cons_bounds_left: 0.040 
     ci_cons_bounds_right: 0.044 
                  p_joint: 0.092 
     ci_joint_bounds_left: 0.089 
    ci_joint_bounds_right: 0.095 

Current progress: 63 percent done.
EML1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.840317e-02	ci left: 6.462931e-01	ci right 6.650161e-01	k: 6557	n:10000
KS ci ratio: 1.119136e-02	ci left: 9.193534e-01	ci right 9.297976e-01	k: 9247	n:10000
EML1   10000 perm   2 sec   (5668 perm/sec)   p_kst 9.247000e-01   p_cons 6.557000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000056/EML1.3_2597_10000_0.9247_0.6557_1.png
                gene_name: EML1
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
EML2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.102021e-02	ci left: 3.616201e-01	ci right 3.806550e-01	k: 3711	n:10000
Cons ci ratio: 7.616684e-02	ci left: 2.013622e-01	ci right 2.174074e-01	k: 2093	n:10000
KS ci ratio: 6.742779e-02	ci left: 2.440081e-01	ci right 2.611363e-01	k: 2525	n:10000
EML2   10000 perm   2 sec   (5946 perm/sec)   p_kst 2.525000e-01   p_cons 2.093000e-01   p_joint 3.711000e-01

Outputting figure to mutsig2_images.part000000000056/EML2.3_2026_10000_0.2525_0.2093_0.3711.png
                gene_name: EML2
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 67 percent done.
EML3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.280433e-02	ci left: 3.458134e-01	ci right 3.646710e-01	k: 3552	n:10000
Cons ci ratio: 1.151171e-01	ci left: 9.788810e-02	ci right 1.099437e-01	k: 1038	n:10000
KS ci ratio: 3.334015e-02	ci left: 5.704549e-01	ci right 5.898984e-01	k: 5802	n:10000
EML3   10000 perm   2 sec   (5303 perm/sec)   p_kst 5.802000e-01   p_cons 1.038000e-01   p_joint 3.552000e-01

Joint ci ratio: 4.978237e-02	ci left: 2.307236e-01	ci right 2.425531e-01	k: 4732	n:20000
Cons ci ratio: 8.153307e-02	ci left: 9.936033e-02	ci right 1.078553e-01	k: 2071	n:20000
KS ci ratio: 2.372191e-02	ci left: 5.703178e-01	ci right 5.840598e-01	k: 11544	n:20000
EML3   20000 perm   4 sec   (4767 perm/sec)   p_kst 5.772000e-01   p_cons 1.035500e-01   p_joint 2.366000e-01

Outputting figure to mutsig2_images.part000000000056/EML3.3_2779_20000_0.5772_0.10355_0.2366.png
                gene_name: EML3
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.099 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 70 percent done.
EML4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.646715e-02	ci left: 2.000809e-01	ci right 2.160895e-01	k: 2080	n:10000
Cons ci ratio: 8.216589e-02	ci left: 1.777272e-01	ci right 1.930565e-01	k: 1853	n:10000
KS ci ratio: 7.190577e-02	ci left: 2.207943e-01	ci right 2.373638e-01	k: 2290	n:10000
EML4   10000 perm   2 sec   (5257 perm/sec)   p_kst 2.290000e-01   p_cons 1.853000e-01   p_joint 2.080000e-01

Outputting figure to mutsig2_images.part000000000056/EML4.3_3038_10000_0.229_0.1853_0.208.png
                gene_name: EML4
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 72 percent done.
EIF4E3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.791789e-02	ci left: 8.196449e-01	ci right 8.345640e-01	k: 8272	n:10000
Cons ci ratio: 2.360957e-02	ci left: 7.250203e-01	ci right 7.424434e-01	k: 7338	n:10000
KS ci ratio: 3.128144e-02	ci left: 6.012631e-01	ci right 6.204723e-01	k: 6109	n:10000
EIF4E3   10000 perm   1 sec   (6941 perm/sec)   p_kst 6.109000e-01   p_cons 7.338000e-01   p_joint 8.272000e-01

Outputting figure to mutsig2_images.part000000000056/EIF4E3.2_703_10000_0.6109_0.7338_0.8272.png
                gene_name: EIF4E3
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 74 percent done.
ELAC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.127937e-02	ci left: 4.642721e-01	ci right 4.839430e-01	k: 4741	n:10000
Cons ci ratio: 4.195586e-02	ci left: 4.561840e-01	ci right 4.758358e-01	k: 4660	n:10000
KS ci ratio: 9.871639e-02	ci left: 1.294361e-01	ci right 1.429766e-01	k: 1361	n:10000
ELAC2   10000 perm   2 sec   (5880 perm/sec)   p_kst 1.361000e-01   p_cons 4.660000e-01   p_joint 4.741000e-01

Outputting figure to mutsig2_images.part000000000056/ELAC2.2_2577_10000_0.1361_0.466_0.4741.png
                gene_name: ELAC2
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 77 percent done.
ELAVL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.346742e-01	ci left: 7.281740e-02	ci right 8.342992e-02	k: 780	n:10000
Cons ci ratio: 1.484236e-01	ci left: 6.034192e-02	ci right 7.011322e-02	k: 651	n:10000
KS ci ratio: 2.298773e-02	ci left: 7.354271e-01	ci right 7.526306e-01	k: 7441	n:10000
ELAVL3   10000 perm   1 sec   (6816 perm/sec)   p_kst 7.441000e-01   p_cons 6.510000e-02   p_joint 7.800000e-02

Joint ci ratio: 9.713258e-02	ci left: 7.163100e-02	ci right 7.899304e-02	k: 1505	n:20000
Cons ci ratio: 1.045681e-01	ci left: 6.220709e-02	ci right 6.911984e-02	k: 1312	n:20000
KS ci ratio: 1.642142e-02	ci left: 7.340628e-01	ci right 7.462673e-01	k: 14804	n:20000
ELAVL3   20000 perm   3 sec   (6012 perm/sec)   p_kst 7.402000e-01   p_cons 6.560000e-02   p_joint 7.525000e-02

Joint ci ratio: 7.948032e-02	ci left: 7.201137e-02	ci right 7.800458e-02	k: 2249	n:30000
Cons ci ratio: 8.546140e-02	ci left: 6.272590e-02	ci right 6.835860e-02	k: 1965	n:30000
KS ci ratio: 1.346387e-02	ci left: 7.335882e-01	ci right 7.435655e-01	k: 22158	n:30000
ELAVL3   30000 perm   5 sec   (5708 perm/sec)   p_kst 7.386000e-01   p_cons 6.550000e-02   p_joint 7.496667e-02

Outputting figure to mutsig2_images.part000000000056/ELAVL3.2_1132_30000_0.7386_0.0655_0.074967.png
                gene_name: ELAVL3
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.066 
      ci_cons_bounds_left: 0.063 
     ci_cons_bounds_right: 0.068 
                  p_joint: 0.075 
     ci_joint_bounds_left: 0.072 
    ci_joint_bounds_right: 0.078 

Current progress: 79 percent done.
ELAVL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.055801e-02	ci left: 4.730621e-01	ci right 4.927479e-01	k: 4829	n:10000
KS ci ratio: 4.963916e-02	ci left: 3.744525e-01	ci right 3.936151e-01	k: 3840	n:10000
ELAVL4   10000 perm   1 sec   (6854 perm/sec)   p_kst 3.840000e-01   p_cons 4.829000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000056/ELAVL4.2_1270_10000_0.384_0.4829_1.png
                gene_name: ELAVL4
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
ELL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.406402e-02	ci left: 5.599267e-01	ci right 5.794327e-01	k: 5697	n:10000
KS ci ratio: 4.059863e-02	ci left: 4.725626e-01	ci right 4.922477e-01	k: 4824	n:10000
ELL3   10000 perm   2 sec   (6611 perm/sec)   p_kst 4.824000e-01   p_cons 5.697000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000056/ELL3.2_1238_10000_0.4824_0.5697_1.png
                gene_name: ELL3
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
ELMO2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.085058e-02	ci left: 9.236870e-01	ci right 9.338615e-01	k: 9289	n:10000
Cons ci ratio: 1.530929e-02	ci left: 8.609022e-01	ci right 8.742829e-01	k: 8677	n:10000
KS ci ratio: 2.314463e-02	ci left: 7.327995e-01	ci right 7.500596e-01	k: 7415	n:10000
ELMO2   10000 perm   2 sec   (6095 perm/sec)   p_kst 7.415000e-01   p_cons 8.677000e-01   p_joint 9.289000e-01

Outputting figure to mutsig2_images.part000000000056/ELMO2.2_2243_10000_0.7415_0.8677_0.9289.png
                gene_name: ELMO2
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 86 percent done.
ELMOD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.502334e-02	ci left: 4.213649e-01	ci right 4.408752e-01	k: 4311	n:10000
Cons ci ratio: 9.935064e-02	ci left: 1.279678e-01	ci right 1.414457e-01	k: 1346	n:10000
KS ci ratio: 4.016222e-02	ci left: 4.779579e-01	ci right 4.976493e-01	k: 4878	n:10000
ELMOD3   10000 perm   1 sec   (6765 perm/sec)   p_kst 4.878000e-01   p_cons 1.346000e-01   p_joint 4.311000e-01

Outputting figure to mutsig2_images.part000000000056/ELMOD3.2_1423_10000_0.4878_0.1346_0.4311.png
                gene_name: ELMOD3
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 88 percent done.
ELOVL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.743651e-02	ci left: 1.324713e-01	ci right 1.461396e-01	k: 1392	n:10000
KS ci ratio: 7.810253e-03	ci left: 9.579609e-01	ci right 9.655670e-01	k: 9619	n:10000
ELOVL5   10000 perm   1 sec   (7096 perm/sec)   p_kst 9.619000e-01   p_cons 1.392000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000056/ELOVL5.2_928_10000_0.9619_0.1392_1.png
                gene_name: ELOVL5
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
EMCN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.166236e-02	ci left: 2.219788e-01	ci right 2.385786e-01	k: 2302	n:10000
Cons ci ratio: 1.159911e-01	ci left: 9.652432e-02	ci right 1.085084e-01	k: 1024	n:10000
KS ci ratio: 1.011016e-02	ci left: 9.327839e-01	ci right 9.423592e-01	k: 9377	n:10000
EMCN   10000 perm   1 sec   (7116 perm/sec)   p_kst 9.377000e-01   p_cons 1.024000e-01   p_joint 2.302000e-01

Joint ci ratio: 5.596161e-02	ci left: 1.914577e-01	ci right 2.025305e-01	k: 3939	n:20000
Cons ci ratio: 8.146729e-02	ci left: 9.950760e-02	ci right 1.080080e-01	k: 2074	n:20000
KS ci ratio: 7.183429e-03	ci left: 9.336462e-01	ci right 9.404260e-01	k: 18742	n:20000
EMCN   20000 perm   3 sec   (6294 perm/sec)   p_kst 9.371000e-01   p_cons 1.037000e-01   p_joint 1.969500e-01

Outputting figure to mutsig2_images.part000000000056/EMCN.2_830_20000_0.9371_0.1037_0.19695.png
                gene_name: EMCN
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.100 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 93 percent done.
EMD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.402025e-01	ci left: 6.739585e-02	ci right 7.765485e-02	k: 724	n:10000
Cons ci ratio: 1.643869e-01	ci left: 4.936226e-02	ci right 5.829990e-02	k: 537	n:10000
KS ci ratio: 2.693860e-02	ci left: 6.699500e-01	ci right 6.883455e-01	k: 6792	n:10000
EMD   10000 perm   1 sec   (6912 perm/sec)   p_kst 6.792000e-01   p_cons 5.370000e-02   p_joint 7.240000e-02

Joint ci ratio: 9.001893e-02	ci left: 8.268849e-02	ci right 9.053218e-02	k: 1731	n:20000
Cons ci ratio: 1.173406e-01	ci left: 4.974084e-02	ci right 5.598996e-02	k: 1056	n:20000
KS ci ratio: 1.914534e-02	ci left: 6.704688e-01	ci right 6.834797e-01	k: 13540	n:20000
EMD   20000 perm   3 sec   (6056 perm/sec)   p_kst 6.770000e-01   p_cons 5.280000e-02   p_joint 8.655000e-02

Joint ci ratio: 8.713328e-02	ci left: 6.043968e-02	ci right 6.597862e-02	k: 1895	n:30000
Cons ci ratio: 9.588875e-02	ci left: 5.023097e-02	ci right 5.532274e-02	k: 1582	n:30000
KS ci ratio: 1.560846e-02	ci left: 6.723443e-01	ci right 6.829546e-01	k: 20330	n:30000
EMD   30000 perm   5 sec   (5754 perm/sec)   p_kst 6.776667e-01   p_cons 5.273333e-02   p_joint 6.316667e-02

Outputting figure to mutsig2_images.part000000000056/EMD.2_789_30000_0.67767_0.052733_0.063167.png
                gene_name: EMD
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.053 
      ci_cons_bounds_left: 0.050 
     ci_cons_bounds_right: 0.055 
                  p_joint: 0.063 
     ci_joint_bounds_left: 0.060 
    ci_joint_bounds_right: 0.066 

Current progress: 95 percent done.
EMID1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.353182e-02	ci left: 1.423679e-01	ci right 1.564370e-01	k: 1493	n:10000
Cons ci ratio: 9.530083e-02	ci left: 1.377611e-01	ci right 1.516466e-01	k: 1446	n:10000
KS ci ratio: 4.061489e-02	ci left: 4.723628e-01	ci right 4.920476e-01	k: 4822	n:10000
EMID1   10000 perm   1 sec   (6701 perm/sec)   p_kst 4.822000e-01   p_cons 1.446000e-01   p_joint 1.493000e-01

Outputting figure to mutsig2_images.part000000000056/EMID1.2_1392_10000_0.4822_0.1446_0.1493.png
                gene_name: EMID1
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.16 

Current progress: 98 percent done.
ENDOD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.357268e-02	ci left: 8.867766e-01	ci right 8.989934e-01	k: 8930	n:10000
KS ci ratio: 1.706549e-02	ci left: 8.333784e-01	ci right 8.478226e-01	k: 8407	n:10000
ENDOD1   10000 perm   2 sec   (6352 perm/sec)   p_kst 8.407000e-01   p_cons 8.930000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000056/ENDOD1.2_1511_10000_0.8407_0.893_1.png
                gene_name: ENDOD1
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000056
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 56 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1552>
Subject: Job 8004050: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1552>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000057> was used as the working directory.
Started at Sun Nov 11 15:05:37 2012
Results reported at Sun Nov 11 15:27:57 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000057.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000057.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 57  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000057.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1545.06 sec.
    Max Memory :      4763 MB
    Max Swap   :      7108 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
57
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 57
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 57: processing genes 5067 - 5157
Calculating significance of each gene.
Using projection method.
5067	ENHO	1
5068	ENKUR	1
5069	ENO1	1
5070	ENO2	7.228568e-01
5071	ENO3	7.327904e-01
5072	ENOPH1	3.049460e-01
5073	ENOSF1	1
5074	ENOX1	6.939485e-01
5075	ENOX2	3.169495e-02
5076	ENPEP	3.836580e-02
5077	ENPP1	6.928461e-01
5078	ENPP2	1
5079	ENPP3	7.533129e-01
5080	ENPP4	6.180260e-01
5081	ENPP5	6.807222e-01
5082	ENPP6	2.873492e-01
5083	ENPP7	2.870616e-02
5084	ENSA	1
5085	ENTHD1	2.756828e-02
5086	ENTPD1	8.569785e-01
5087	ENTPD2	4.551047e-01
5088	ENTPD3	9.198334e-01
5089	ENTPD4	1
5090	ENTPD5	8.215423e-01
5091	ENTPD6	4.418811e-01
5092	ENTPD7	5.750007e-01
5093	ENTPD8	7.873388e-01
5094	ENY2	1
5095	EOMES	3.268893e-01
5096	EP300	9.713708e-01
5097	EP400	9.999905e-01
5098	EPAS1	9.163301e-01
5099	EPB41	5.608821e-01
5100	EPB41L1	8.724904e-01
5101	EPB41L2	9.532633e-01
5102	EPB41L3	6.425834e-04
5103	EPB41L4A	9.612150e-01
5104	EPB41L4B	1
5105	EPB41L5	1.972488e-01
5106	EPB42	7.331118e-01
5107	EPB49	7.181383e-01
5108	EPC1	9.514846e-01
5109	EPC2	7.945316e-01
5110	EPCAM	6.486710e-01
5111	EPDR1	7.853823e-01
5112	EPGN	1
5113	EPHA1	9.724399e-01
5114	EPHA10	2.461377e-01
5115	EPHA2	9.514277e-01
5116	EPHA3	6.192563e-01
5117	EPHA4	1
5118	EPHA5	5.188824e-01
5119	EPHA6	6.936757e-01
5120	EPHA7	1.839012e-01
5121	EPHA8	9.663420e-01
5122	EPHB1	9.598643e-01
5123	EPHB2	7.309951e-01
5124	EPHB3	8.365925e-01
5125	EPHB4	8.379612e-01
5126	EPHB6	8.917512e-01
5127	EPHX1	1
5128	EPHX2	6.941840e-01
5129	EPHX3	1
5130	EPHX4	1
5131	EPM2A	5.759068e-01
5132	EPM2AIP1	7.792257e-01
5133	EPN1	1.728914e-01
5134	EPN2	9.486940e-01
5135	EPN3	9.493583e-01
5136	EPO	1
5137	EPOR	5.346447e-01
5138	EPPK1	9.997853e-01
5139	EPRS	7.775345e-02
5140	EPS15	3.837579e-01
5141	EPS15L1	8.188932e-01
5142	EPS8	7.363717e-01
5143	EPS8L1	2.750527e-01
5144	EPS8L2	1
5145	EPS8L3	8.565995e-01
5146	EPSTI1	2.127780e-01
5147	EPT1	4.775339e-01
5148	EPX	7.426395e-01
5149	EPYC	6.925122e-01
5150	ERAL1	6.942970e-01
5151	ERAP1	9.525818e-01
5152	ERAP2	9.344377e-01
5153	ERAS	2.551318e-02
5154	ERBB2	9.700074e-01
5155	ERBB2IP	8.010661e-01
5156	ERBB3	8.515504e-01
5157	ERBB4	3.948055e-01
Done

Running MutSig 2:
Scatter job 57: processing genes 5067 - 5157
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
EPB41L3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.954049e-02	ci left: 4.857530e-01	ci right 5.054495e-01	k: 4956	n:10000
Cons ci ratio: 4.031520e-02	ci left: 4.760594e-01	ci right 4.957488e-01	k: 4859	n:10000
KS ci ratio: 5.055356e-02	ci left: 3.658968e-01	ci right 3.849758e-01	k: 3754	n:10000
EPB41L3   10000 perm   3 sec   (3465 perm/sec)   p_kst 3.754000e-01   p_cons 4.859000e-01   p_joint 4.956000e-01

Outputting figure to mutsig2_images.part000000000057/EPB41L3.20_3348_10000_0.3754_0.4859_0.4956.png
                gene_name: EPB41L3
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 2 percent done.
EPHA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.185194e-01	ci left: 9.272705e-02	ci right 1.045080e-01	k: 985	n:10000
Cons ci ratio: 6.442281e-02	ci left: 2.614155e-01	ci right 2.789186e-01	k: 2701	n:10000
KS ci ratio: 2.086194e-01	ci left: 3.053425e-02	ci right 3.774046e-02	k: 340	n:10000
EPHA5   10000 perm   3 sec   (3766 perm/sec)   p_kst 3.400000e-02   p_cons 2.701000e-01   p_joint 9.850000e-02

Joint ci ratio: 1.116030e-01	ci left: 5.484866e-02	ci right 6.138055e-02	k: 1161	n:20000
Cons ci ratio: 4.568731e-02	ci left: 2.628633e-01	ci right 2.752039e-01	k: 5380	n:20000
KS ci ratio: 1.513527e-01	ci left: 2.998929e-02	ci right 3.494786e-02	k: 648	n:20000
EPHA5   20000 perm   6 sec   (3504 perm/sec)   p_kst 3.240000e-02   p_cons 2.690000e-01   p_joint 5.805000e-02

Joint ci ratio: 1.072028e-01	ci left: 4.037492e-02	ci right 4.498084e-02	k: 1279	n:30000
Cons ci ratio: 3.729887e-02	ci left: 2.640543e-01	ci right 2.741238e-01	k: 8072	n:30000
KS ci ratio: 1.230259e-01	ci left: 3.071616e-02	ci right 3.477499e-02	k: 981	n:30000
EPHA5   30000 perm   9 sec   (3431 perm/sec)   p_kst 3.270000e-02   p_cons 2.690667e-01   p_joint 4.263333e-02

Joint ci ratio: 8.747850e-02	ci left: 4.570519e-02	ci right 4.991077e-02	k: 1911	n:40000
Cons ci ratio: 3.244198e-02	ci left: 2.630422e-01	ci right 2.717416e-01	k: 10695	n:40000
KS ci ratio: 1.067690e-01	ci left: 3.085682e-02	ci right 3.436146e-02	k: 1303	n:40000
EPHA5   40000 perm   12 sec   (3366 perm/sec)   p_kst 3.257500e-02   p_cons 2.673750e-01   p_joint 4.777500e-02

Joint ci ratio: 7.778301e-02	ci left: 4.645664e-02	ci right 5.023602e-02	k: 2416	n:50000
Cons ci ratio: 2.901849e-02	ci left: 2.634843e-01	ci right 2.712628e-01	k: 13368	n:50000
KS ci ratio: 9.492693e-02	ci left: 3.141229e-02	ci right 3.456224e-02	k: 1648	n:50000
EPHA5   50000 perm   15 sec   (3298 perm/sec)   p_kst 3.296000e-02   p_cons 2.673600e-01   p_joint 4.832000e-02

Outputting figure to mutsig2_images.part000000000057/EPHA5.15_3186_50000_0.03296_0.26736_0.04832.png
                gene_name: EPHA5
               theta_stop: 0.095 
                    nperm: 50000 
                     p_ks: 0.033 
        ci_ks_bounds_left: 0.031 
       ci_ks_bounds_right: 0.035 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.048 
     ci_joint_bounds_left: 0.046 
    ci_joint_bounds_right: 0.050 

Current progress: 4 percent done.
EPHA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.559696e-02	ci left: 4.151844e-01	ci right 4.346594e-01	k: 4249	n:10000
Cons ci ratio: 1.094410e-01	ci left: 1.074437e-01	ci right 1.199823e-01	k: 1136	n:10000
KS ci ratio: 3.127486e-02	ci left: 6.013635e-01	ci right 6.205718e-01	k: 6110	n:10000
EPHA6   10000 perm   3 sec   (3756 perm/sec)   p_kst 6.110000e-01   p_cons 1.136000e-01   p_joint 4.249000e-01

Joint ci ratio: 3.151671e-02	ci left: 4.292120e-01	ci right 4.430066e-01	k: 8722	n:20000
Cons ci ratio: 7.552655e-02	ci left: 1.141990e-01	ci right 1.232122e-01	k: 2373	n:20000
KS ci ratio: 2.219497e-02	ci left: 6.024976e-01	ci right 6.160706e-01	k: 12186	n:20000
EPHA6   20000 perm   6 sec   (3524 perm/sec)   p_kst 6.093000e-01   p_cons 1.186500e-01   p_joint 4.361000e-01

Outputting figure to mutsig2_images.part000000000057/EPHA6.14_3582_20000_0.6093_0.11865_0.4361.png
                gene_name: EPHA6
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.44 

Current progress: 5 percent done.
EPHB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.581162e-01	ci left: 5.330545e-02	ci right 6.255418e-02	k: 578	n:10000
Cons ci ratio: 1.342088e-01	ci left: 7.330186e-02	ci right 8.394515e-02	k: 785	n:10000
KS ci ratio: 1.250251e-01	ci left: 8.387799e-02	ci right 9.516246e-02	k: 894	n:10000
EPHB1   10000 perm   2 sec   (4421 perm/sec)   p_kst 8.940000e-02   p_cons 7.850000e-02   p_joint 5.780000e-02

Joint ci ratio: 1.081378e-01	ci left: 5.830682e-02	ci right 6.502132e-02	k: 1232	n:20000
Cons ci ratio: 9.348920e-02	ci left: 7.701023e-02	ci right 8.461216e-02	k: 1615	n:20000
KS ci ratio: 8.707860e-02	ci left: 8.797988e-02	ci right 9.603919e-02	k: 1839	n:20000
EPHB1   20000 perm   5 sec   (3988 perm/sec)   p_kst 9.195000e-02   p_cons 8.075000e-02   p_joint 6.160000e-02

Joint ci ratio: 7.628280e-02	ci left: 7.780565e-02	ci right 8.400913e-02	k: 2426	n:30000
Cons ci ratio: 7.718604e-02	ci left: 7.610285e-02	ci right 8.224561e-02	k: 2374	n:30000
KS ci ratio: 7.104317e-02	ci left: 8.885077e-02	ci right 9.542846e-02	k: 2763	n:30000
EPHB1   30000 perm   8 sec   (3849 perm/sec)   p_kst 9.210000e-02   p_cons 7.913333e-02   p_joint 8.086667e-02

Outputting figure to mutsig2_images.part000000000057/EPHB1.13_3019_30000_0.0921_0.079133_0.080867.png
                gene_name: EPHB1
               theta_stop: 0.077 
                    nperm: 30000 
                     p_ks: 0.092 
        ci_ks_bounds_left: 0.089 
       ci_ks_bounds_right: 0.095 
                   p_cons: 0.079 
      ci_cons_bounds_left: 0.076 
     ci_cons_bounds_right: 0.082 
                  p_joint: 0.081 
     ci_joint_bounds_left: 0.078 
    ci_joint_bounds_right: 0.084 

Current progress: 7 percent done.
ERBB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.141221e-03	ci left: 9.439858e-01	ci right 9.527507e-01	k: 9485	n:10000
Cons ci ratio: 1.925724e-02	ci left: 7.977051e-01	ci right 8.133165e-01	k: 8056	n:10000
KS ci ratio: 2.078848e-02	ci left: 7.722565e-01	ci right 7.885799e-01	k: 7805	n:10000
ERBB4   10000 perm   3 sec   (3948 perm/sec)   p_kst 7.805000e-01   p_cons 8.056000e-01   p_joint 9.485000e-01

Outputting figure to mutsig2_images.part000000000057/ERBB4.13_4039_10000_0.7805_0.8056_0.9485.png
                gene_name: ERBB4
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 9 percent done.
EPRS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.099927e-02	ci left: 6.055814e-01	ci right 6.247515e-01	k: 6152	n:10000
Cons ci ratio: 1.722442e-02	ci left: 8.308338e-01	ci right 8.453686e-01	k: 8382	n:10000
KS ci ratio: 5.639027e-02	ci left: 3.165168e-01	ci right 3.349849e-01	k: 3257	n:10000
EPRS   10000 perm   3 sec   (3817 perm/sec)   p_kst 3.257000e-01   p_cons 8.382000e-01   p_joint 6.152000e-01

Outputting figure to mutsig2_images.part000000000057/EPRS.12_4667_10000_0.3257_0.8382_0.6152.png
                gene_name: EPRS
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.62 

Current progress: 11 percent done.
ENPEP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.987106e-02	ci left: 6.230635e-01	ci right 6.420592e-01	k: 6326	n:10000
KS ci ratio: 2.210077e-02	ci left: 7.502904e-01	ci right 7.671586e-01	k: 7588	n:10000
ENPEP   10000 perm   2 sec   (4022 perm/sec)   p_kst 7.588000e-01   p_cons 6.326000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000057/ENPEP.11_2954_10000_0.7588_0.6326_1.png
                gene_name: ENPEP
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 12 percent done.
EPHA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.805083e-02	ci left: 3.898806e-01	ci right 4.091780e-01	k: 3995	n:10000
Cons ci ratio: 9.909574e-02	ci left: 1.285551e-01	ci right 1.420581e-01	k: 1352	n:10000
KS ci ratio: 1.565400e-02	ci left: 8.555948e-01	ci right 8.691933e-01	k: 8625	n:10000
EPHA3   10000 perm   2 sec   (4379 perm/sec)   p_kst 8.625000e-01   p_cons 1.352000e-01   p_joint 3.995000e-01

Outputting figure to mutsig2_images.part000000000057/EPHA3.11_3046_10000_0.8625_0.1352_0.3995.png
                gene_name: EPHA3
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 14 percent done.
EP300
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.159387e-01	ci left: 2.844783e-02	ci right 3.542834e-02	k: 318	n:10000
Cons ci ratio: 9.320203e-02	ci left: 1.432503e-01	ci right 1.573541e-01	k: 1502	n:10000
KS ci ratio: 1.846975e-01	ci left: 3.910770e-02	ci right 4.716118e-02	k: 430	n:10000
EP300   10000 perm   3 sec   (3348 perm/sec)   p_kst 4.300000e-02   p_cons 1.502000e-01   p_joint 3.180000e-02

Joint ci ratio: 1.048247e-01	ci left: 6.191444e-02	ci right 6.881258e-02	k: 1306	n:20000
Cons ci ratio: 6.713154e-02	ci left: 1.407386e-01	ci right 1.505646e-01	k: 2912	n:20000
KS ci ratio: 1.298188e-01	ci left: 4.076302e-02	ci right 4.647062e-02	k: 871	n:20000
EP300   20000 perm   6 sec   (3083 perm/sec)   p_kst 4.355000e-02   p_cons 1.456000e-01   p_joint 6.530000e-02

Joint ci ratio: 8.255541e-02	ci left: 6.700709e-02	ci right 7.280987e-02	k: 2096	n:30000
Cons ci ratio: 5.451033e-02	ci left: 1.430106e-01	ci right 1.510578e-01	k: 4410	n:30000
KS ci ratio: 1.038971e-01	ci left: 4.294170e-02	ci right 4.768020e-02	k: 1358	n:30000
EP300   30000 perm   10 sec   (2974 perm/sec)   p_kst 4.526667e-02   p_cons 1.470000e-01   p_joint 6.986667e-02

Joint ci ratio: 8.185504e-02	ci left: 5.200113e-02	ci right 5.646386e-02	k: 2168	n:40000
Cons ci ratio: 4.704969e-02	ci left: 1.443847e-01	ci right 1.513665e-01	k: 5914	n:40000
KS ci ratio: 9.071442e-02	ci left: 4.257325e-02	ci right 4.664320e-02	k: 1783	n:40000
EP300   40000 perm   14 sec   (2914 perm/sec)   p_kst 4.457500e-02   p_cons 1.478500e-01   p_joint 5.420000e-02

Outputting figure to mutsig2_images.part000000000057/EP300.9_7369_40000_0.044575_0.14785_0.0542.png
                gene_name: EP300
               theta_stop: 0.091 
                    nperm: 40000 
                     p_ks: 0.045 
        ci_ks_bounds_left: 0.043 
       ci_ks_bounds_right: 0.047 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.054 
     ci_joint_bounds_left: 0.052 
    ci_joint_bounds_right: 0.056 

Current progress: 16 percent done.
EP400
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.877030e-02	ci left: 8.057249e-01	ci right 8.210921e-01	k: 8135	n:10000
Cons ci ratio: 2.262572e-02	ci left: 7.414922e-01	ci right 7.585620e-01	k: 7501	n:10000
KS ci ratio: 3.343604e-02	ci left: 5.690509e-01	ci right 5.885032e-01	k: 5788	n:10000
EP400   10000 perm   4 sec   (2514 perm/sec)   p_kst 5.788000e-01   p_cons 7.501000e-01   p_joint 8.135000e-01

Outputting figure to mutsig2_images.part000000000057/EP400.9_9577_10000_0.5788_0.7501_0.8135.png
                gene_name: EP400
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 18 percent done.
EPHA7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.624798e-02	ci left: 5.291699e-01	ci right 5.488074e-01	k: 5390	n:10000
Cons ci ratio: 5.215377e-02	ci left: 3.514787e-01	ci right 3.704024e-01	k: 3609	n:10000
KS ci ratio: 4.548520e-02	ci left: 4.163805e-01	ci right 4.358625e-01	k: 4261	n:10000
EPHA7   10000 perm   2 sec   (4940 perm/sec)   p_kst 4.261000e-01   p_cons 3.609000e-01   p_joint 5.390000e-01

Outputting figure to mutsig2_images.part000000000057/EPHA7.9_3065_10000_0.4261_0.3609_0.539.png
                gene_name: EPHA7
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 19 percent done.
ENPP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.671537e-02	ci left: 4.034258e-01	ci right 4.228248e-01	k: 4131	n:10000
Cons ci ratio: 7.031466e-02	ci left: 2.286929e-01	ci right 2.454605e-01	k: 2370	n:10000
KS ci ratio: 4.357574e-02	ci left: 4.374215e-01	ci right 4.570092e-01	k: 4472	n:10000
ENPP1   10000 perm   3 sec   (3973 perm/sec)   p_kst 4.472000e-01   p_cons 2.370000e-01   p_joint 4.131000e-01

Outputting figure to mutsig2_images.part000000000057/ENPP1.8_2878_10000_0.4472_0.237_0.4131.png
                gene_name: ENPP1
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 21 percent done.
EPHB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.309804e-01	ci left: 7.679184e-02	ci right 8.765300e-02	k: 821	n:10000
Cons ci ratio: 7.171345e-03	ci left: 9.640458e-01	ci right 9.710784e-01	k: 9677	n:10000
KS ci ratio: 2.268173e-01	ci left: 2.570435e-02	ci right 3.237377e-02	k: 289	n:10000
EPHB3   10000 perm   2 sec   (4374 perm/sec)   p_kst 2.890000e-02   p_cons 9.677000e-01   p_joint 8.210000e-02

Joint ci ratio: 9.268048e-02	ci left: 7.828247e-02	ci right 8.593954e-02	k: 1641	n:20000
Cons ci ratio: 4.990093e-03	ci left: 9.661407e-01	ci right 9.710218e-01	k: 19373	n:20000
KS ci ratio: 1.533170e-01	ci left: 2.921889e-02	ci right 3.411851e-02	k: 632	n:20000
EPHB3   20000 perm   5 sec   (4005 perm/sec)   p_kst 3.160000e-02   p_cons 9.686500e-01   p_joint 8.205000e-02

Joint ci ratio: 6.229448e-02	ci left: 1.129560e-01	ci right 1.202518e-01	k: 3497	n:30000
Cons ci ratio: 4.125642e-03	ci left: 9.658085e-01	ci right 9.698335e-01	k: 29036	n:30000
KS ci ratio: 1.262519e-01	ci left: 2.916455e-02	ci right 3.312694e-02	k: 933	n:30000
EPHB3   30000 perm   8 sec   (3848 perm/sec)   p_kst 3.110000e-02   p_cons 9.678667e-01   p_joint 1.165667e-01

Joint ci ratio: 6.401852e-02	ci left: 8.294984e-02	ci right 8.846048e-02	k: 3427	n:40000
Cons ci ratio: 3.572029e-03	ci left: 9.661002e-01	ci right 9.695815e-01	k: 38715	n:40000
KS ci ratio: 1.095802e-01	ci left: 2.929880e-02	ci right 3.271973e-02	k: 1239	n:40000
EPHB3   40000 perm   11 sec   (3747 perm/sec)   p_kst 3.097500e-02   p_cons 9.678750e-01   p_joint 8.567500e-02

Joint ci ratio: 6.963546e-02	ci left: 5.752082e-02	ci right 6.169049e-02	k: 2979	n:50000
Cons ci ratio: 3.224108e-03	ci left: 9.657037e-01	ci right 9.688417e-01	k: 48365	n:50000
KS ci ratio: 9.900486e-02	ci left: 2.889293e-02	ci right 3.192191e-02	k: 1519	n:50000
EPHB3   50000 perm   14 sec   (3676 perm/sec)   p_kst 3.038000e-02   p_cons 9.673000e-01   p_joint 5.958000e-02

Outputting figure to mutsig2_images.part000000000057/EPHB3.8_3061_50000_0.03038_0.9673_0.05958.png
                gene_name: EPHB3
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.030 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.060 
     ci_joint_bounds_left: 0.058 
    ci_joint_bounds_right: 0.062 

Current progress: 23 percent done.
EPPK1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.062465e-02	ci left: 7.749918e-01	ci right 7.912430e-01	k: 7832	n:10000
Cons ci ratio: 5.871592e-02	ci left: 2.991568e-01	ci right 3.173550e-01	k: 3082	n:10000
KS ci ratio: 8.357525e-03	ci left: 9.524213e-01	ci right 9.605100e-01	k: 9566	n:10000
EPPK1   10000 perm   3 sec   (3341 perm/sec)   p_kst 9.566000e-01   p_cons 3.082000e-01   p_joint 7.832000e-01

Outputting figure to mutsig2_images.part000000000057/EPPK1.7_7267_10000_0.9566_0.3082_0.7832.png
                gene_name: EPPK1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 25 percent done.
ENPP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.312912e-02	ci left: 1.434464e-01	ci right 1.575578e-01	k: 1504	n:10000
Cons ci ratio: 4.431467e-02	ci left: 4.291426e-01	ci right 4.486930e-01	k: 4389	n:10000
KS ci ratio: 1.390683e-01	ci left: 6.846013e-02	ci right 7.878990e-02	k: 735	n:10000
ENPP2   10000 perm   2 sec   (4694 perm/sec)   p_kst 7.350000e-02   p_cons 4.389000e-01   p_joint 1.504000e-01

Joint ci ratio: 6.820389e-02	ci left: 1.368941e-01	ci right 1.466103e-01	k: 2834	n:20000
Cons ci ratio: 3.171613e-02	ci left: 4.261181e-01	ci right 4.399014e-01	k: 8660	n:20000
KS ci ratio: 9.902981e-02	ci left: 6.904119e-02	ci right 7.628364e-02	k: 1452	n:20000
ENPP2   20000 perm   5 sec   (4171 perm/sec)   p_kst 7.260000e-02   p_cons 4.330000e-01   p_joint 1.417000e-01

Outputting figure to mutsig2_images.part000000000057/ENPP2.7_2931_20000_0.0726_0.433_0.1417.png
                gene_name: ENPP2
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.073 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.076 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 26 percent done.
ENOX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.200595e-02	ci left: 9.086422e-01	ci right 9.197151e-01	k: 9143	n:10000
KS ci ratio: 1.566719e-02	ci left: 8.553907e-01	ci right 8.689975e-01	k: 8623	n:10000
ENOX2   10000 perm   2 sec   (5140 perm/sec)   p_kst 8.623000e-01   p_cons 9.143000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000057/ENOX2.6_1885_10000_0.8623_0.9143_1.png
                gene_name: ENOX2
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 28 percent done.
ENPP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.044753e-01	ci left: 1.169164e-01	ci right 1.299039e-01	k: 1233	n:10000
Cons ci ratio: 2.482064e-02	ci left: 7.048299e-01	ci right 7.226454e-01	k: 7138	n:10000
KS ci ratio: 1.480595e-01	ci left: 6.063148e-02	ci right 7.042348e-02	k: 654	n:10000
ENPP3   10000 perm   2 sec   (4848 perm/sec)   p_kst 6.540000e-02   p_cons 7.138000e-01   p_joint 1.233000e-01

Joint ci ratio: 7.004254e-02	ci left: 1.306371e-01	ci right 1.401692e-01	k: 2707	n:20000
Cons ci ratio: 1.749756e-02	ci left: 7.087382e-01	ci right 7.212992e-01	k: 14301	n:20000
KS ci ratio: 1.060452e-01	ci left: 6.054901e-02	ci right 6.737843e-02	k: 1278	n:20000
ENPP3   20000 perm   5 sec   (4330 perm/sec)   p_kst 6.390000e-02   p_cons 7.150500e-01   p_joint 1.353500e-01

Joint ci ratio: 6.158907e-02	ci left: 1.152906e-01	ci right 1.226500e-01	k: 3568	n:30000
Cons ci ratio: 1.372781e-02	ci left: 7.259767e-01	ci right 7.360451e-01	k: 21931	n:30000
KS ci ratio: 8.541492e-02	ci left: 6.279123e-02	ci right 6.842658e-02	k: 1967	n:30000
ENPP3   30000 perm   7 sec   (4099 perm/sec)   p_kst 6.556667e-02   p_cons 7.310333e-01   p_joint 1.189333e-01

Outputting figure to mutsig2_images.part000000000057/ENPP3.6_2728_30000_0.065567_0.73103_0.11893.png
                gene_name: ENPP3
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.066 
        ci_ks_bounds_left: 0.063 
       ci_ks_bounds_right: 0.068 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 30 percent done.
ENTHD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.049740e-02	ci left: 6.133161e-01	ci right 6.324122e-01	k: 6229	n:10000
Cons ci ratio: 5.654465e-02	ci left: 3.153259e-01	ci right 3.337764e-01	k: 3245	n:10000
KS ci ratio: 2.298170e-02	ci left: 7.355281e-01	ci right 7.527294e-01	k: 7442	n:10000
ENTHD1   10000 perm   2 sec   (5288 perm/sec)   p_kst 7.442000e-01   p_cons 3.245000e-01   p_joint 6.229000e-01

Outputting figure to mutsig2_images.part000000000057/ENTHD1.6_1848_10000_0.7442_0.3245_0.6229.png
                gene_name: ENTHD1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 32 percent done.
EPHA8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.670253e-02	ci left: 5.229629e-01	ci right 5.426180e-01	k: 5328	n:10000
Cons ci ratio: 3.060133e-02	ci left: 6.117087e-01	ci right 6.308206e-01	k: 6213	n:10000
KS ci ratio: 5.322182e-02	ci left: 3.422361e-01	ci right 3.610504e-01	k: 3516	n:10000
EPHA8   10000 perm   2 sec   (4536 perm/sec)   p_kst 3.516000e-01   p_cons 6.213000e-01   p_joint 5.328000e-01

Outputting figure to mutsig2_images.part000000000057/EPHA8.6_3259_10000_0.3516_0.6213_0.5328.png
                gene_name: EPHA8
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 33 percent done.
ENPP7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.414167e-02	ci left: 7.161338e-01	ci right 7.337350e-01	k: 7250	n:10000
KS ci ratio: 1.048516e-02	ci left: 9.282324e-01	ci right 9.381134e-01	k: 9333	n:10000
ENPP7   10000 perm   2 sec   (5485 perm/sec)   p_kst 9.333000e-01   p_cons 7.250000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000057/ENPP7.5_1397_10000_0.9333_0.725_1.png
                gene_name: ENPP7
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 35 percent done.
EPB41L5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.061926e-03	ci left: 9.554502e-01	ci right 9.632793e-01	k: 9595	n:10000
KS ci ratio: 2.288515e-02	ci left: 7.371453e-01	ci right 7.543113e-01	k: 7458	n:10000
EPB41L5   10000 perm   2 sec   (4989 perm/sec)   p_kst 7.458000e-01   p_cons 9.595000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000057/EPB41L5.5_2483_10000_0.7458_0.9595_1.png
                gene_name: EPB41L5
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 37 percent done.
EPHA10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.008395e-02	ci left: 1.519811e-01	ci right 1.664180e-01	k: 1591	n:10000
Cons ci ratio: 1.835874e-01	ci left: 3.958555e-02	ci right 4.768301e-02	k: 435	n:10000
KS ci ratio: 4.135393e-02	ci left: 4.633733e-01	ci right 4.830423e-01	k: 4732	n:10000
EPHA10   10000 perm   2 sec   (4586 perm/sec)   p_kst 4.732000e-01   p_cons 4.350000e-02   p_joint 1.591000e-01

Joint ci ratio: 8.705255e-02	ci left: 8.802889e-02	ci right 9.609016e-02	k: 1840	n:20000
Cons ci ratio: 1.291237e-01	ci left: 4.119905e-02	ci right 4.693445e-02	k: 880	n:20000
KS ci ratio: 2.955076e-02	ci left: 4.610648e-01	ci right 4.749445e-01	k: 9360	n:20000
EPHA10   20000 perm   5 sec   (4269 perm/sec)   p_kst 4.680000e-01   p_cons 4.400000e-02   p_joint 9.200000e-02

Joint ci ratio: 5.736144e-02	ci left: 1.308226e-01	ci right 1.385816e-01	k: 4040	n:30000
Cons ci ratio: 1.050355e-01	ci left: 4.203170e-02	ci right 4.672372e-02	k: 1330	n:30000
KS ci ratio: 2.497559e-02	ci left: 4.452244e-01	ci right 4.565184e-01	k: 13526	n:30000
EPHA10   30000 perm   7 sec   (4093 perm/sec)   p_kst 4.508667e-01   p_cons 4.433333e-02   p_joint 1.346667e-01

Joint ci ratio: 5.054746e-02	ci left: 1.273864e-01	ci right 1.340173e-01	k: 5227	n:40000
Cons ci ratio: 9.149554e-02	ci left: 4.186405e-02	ci right 4.590250e-02	k: 1754	n:40000
KS ci ratio: 2.118183e-02	ci left: 4.563553e-01	ci right 4.661503e-01	k: 18450	n:40000
EPHA10   40000 perm   10 sec   (3981 perm/sec)   p_kst 4.612500e-01   p_cons 4.385000e-02   p_joint 1.306750e-01

Outputting figure to mutsig2_images.part000000000057/EPHA10.5_3133_40000_0.46125_0.04385_0.13068.png
                gene_name: EPHA10
               theta_stop: 0.091 
                    nperm: 40000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.044 
      ci_cons_bounds_left: 0.042 
     ci_cons_bounds_right: 0.046 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 39 percent done.
EPHB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.554170e-02	ci left: 8.573295e-01	ci right 8.708576e-01	k: 8642	n:10000
Cons ci ratio: 3.033536e-02	ci left: 6.158280e-01	ci right 6.348989e-01	k: 6254	n:10000
KS ci ratio: 2.143030e-02	ci left: 7.615226e-01	ci right 7.781199e-01	k: 7699	n:10000
EPHB2   10000 perm   2 sec   (4613 perm/sec)   p_kst 7.699000e-01   p_cons 6.254000e-01   p_joint 8.642000e-01

Outputting figure to mutsig2_images.part000000000057/EPHB2.5_3028_10000_0.7699_0.6254_0.8642.png
                gene_name: EPHB2
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 40 percent done.
EPS15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.360105e-02	ci left: 8.863668e-01	ci right 8.986035e-01	k: 8926	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
EPS15   10000 perm   2 sec   (5115 perm/sec)   p_kst 1   p_cons 8.926000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000057/EPS15.5_2889_10000_1_0.8926_1.png
                gene_name: EPS15
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 42 percent done.
ERBB2IP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.299497e-01	ci left: 7.795586e-02	ci right 8.888826e-02	k: 833	n:10000
Cons ci ratio: 3.242904e-01	ci left: 1.206533e-02	ci right 1.682370e-02	k: 143	n:10000
KS ci ratio: 4.574653e-02	ci left: 4.135897e-01	ci right 4.330550e-01	k: 4233	n:10000
ERBB2IP   10000 perm   2 sec   (4742 perm/sec)   p_kst 4.233000e-01   p_cons 1.430000e-02   p_joint 8.330000e-02

Joint ci ratio: 1.106956e-01	ci left: 5.572506e-02	ci right 6.230387e-02	k: 1179	n:20000
Cons ci ratio: 2.269270e-01	ci left: 1.303072e-02	ci right 1.641252e-02	k: 293	n:20000
KS ci ratio: 3.201173e-02	ci left: 4.215776e-01	ci right 4.353432e-01	k: 8569	n:20000
ERBB2IP   20000 perm   5 sec   (4260 perm/sec)   p_kst 4.284500e-01   p_cons 1.465000e-02   p_joint 5.895000e-02

Joint ci ratio: 1.110656e-01	ci left: 3.764831e-02	ci right 4.210802e-02	k: 1195	n:30000
Cons ci ratio: 1.846502e-01	ci left: 1.343225e-02	ci right 1.619621e-02	k: 443	n:30000
KS ci ratio: 2.614448e-02	ci left: 4.227243e-01	ci right 4.339562e-01	k: 12850	n:30000
ERBB2IP   30000 perm   7 sec   (4082 perm/sec)   p_kst 4.283333e-01   p_cons 1.476667e-02   p_joint 3.983333e-02

Joint ci ratio: 7.219176e-02	ci left: 6.616633e-02	ci right 7.114651e-02	k: 2745	n:40000
Cons ci ratio: 1.617243e-01	ci left: 1.330337e-02	ci right 1.566788e-02	k: 578	n:40000
KS ci ratio: 2.269575e-02	ci left: 4.223203e-01	ci right 4.320403e-01	k: 17087	n:40000
ERBB2IP   40000 perm   10 sec   (3939 perm/sec)   p_kst 4.271750e-01   p_cons 1.445000e-02   p_joint 6.862500e-02

Joint ci ratio: 7.625378e-02	ci left: 4.828257e-02	ci right 5.212987e-02	k: 2509	n:50000
Cons ci ratio: 1.434243e-01	ci left: 1.366336e-02	ci right 1.579353e-02	k: 735	n:50000
KS ci ratio: 2.063251e-02	ci left: 4.149097e-01	ci right 4.235797e-01	k: 20962	n:50000
ERBB2IP   50000 perm   13 sec   (3826 perm/sec)   p_kst 4.192400e-01   p_cons 1.470000e-02   p_joint 5.018000e-02

Joint ci ratio: 7.574260e-02	ci left: 4.111244e-02	ci right 4.436531e-02	k: 2563	n:60000
Cons ci ratio: 1.326302e-01	ci left: 1.339748e-02	ci right 1.531658e-02	k: 860	n:60000
KS ci ratio: 1.887005e-02	ci left: 4.143820e-01	ci right 4.222926e-01	k: 25100	n:60000
ERBB2IP   60000 perm   16 sec   (3745 perm/sec)   p_kst 4.183333e-01   p_cons 1.433333e-02   p_joint 4.271667e-02

Joint ci ratio: 6.668438e-02	ci left: 4.547196e-02	ci right 4.862286e-02	k: 3292	n:70000
Cons ci ratio: 1.231968e-01	ci left: 1.337812e-02	ci right 1.514820e-02	k: 997	n:70000
KS ci ratio: 1.747513e-02	ci left: 4.145422e-01	ci right 4.218646e-01	k: 29274	n:70000
ERBB2IP   70000 perm   19 sec   (3669 perm/sec)   p_kst 4.182000e-01   p_cons 1.424286e-02   p_joint 4.702857e-02

Joint ci ratio: 6.247718e-02	ci left: 4.543282e-02	ci right 4.837515e-02	k: 3751	n:80000
Cons ci ratio: 1.159420e-01	ci left: 1.327011e-02	ci right 1.491541e-02	k: 1126	n:80000
KS ci ratio: 1.635326e-02	ci left: 4.145789e-01	ci right 4.214270e-01	k: 33440	n:80000
ERBB2IP   80000 perm   22 sec   (3609 perm/sec)   p_kst 4.180000e-01   p_cons 1.407500e-02   p_joint 4.688750e-02

Joint ci ratio: 6.319460e-02	ci left: 3.970284e-02	ci right 4.230463e-02	k: 3689	n:90000
Cons ci ratio: 1.083989e-01	ci left: 1.354529e-02	ci right 1.510847e-02	k: 1288	n:90000
KS ci ratio: 1.545755e-02	ci left: 4.135317e-01	ci right 4.199848e-01	k: 37508	n:90000
ERBB2IP   90000 perm   25 sec   (3554 perm/sec)   p_kst 4.167556e-01   p_cons 1.431111e-02   p_joint 4.098889e-02

Joint ci ratio: 4.883173e-02	ci left: 5.905976e-02	ci right 6.202579e-02	k: 6053	n:100000
Cons ci ratio: 1.028443e-01	ci left: 1.358301e-02	ci right 1.506536e-02	k: 1431	n:100000
KS ci ratio: 1.466572e-02	ci left: 4.136518e-01	ci right 4.197731e-01	k: 41671	n:100000
ERBB2IP   100000 perm   29 sec   (3495 perm/sec)   p_kst 4.167100e-01   p_cons 1.431000e-02   p_joint 6.053000e-02

Joint ci ratio: 5.066152e-02	ci left: 5.030898e-02	ci right 5.293291e-02	k: 5677	n:110000
Cons ci ratio: 9.771897e-02	ci left: 1.371313e-02	ci right 1.513082e-02	k: 1585	n:110000
KS ci ratio: 1.399687e-02	ci left: 4.133211e-01	ci right 4.191561e-01	k: 45786	n:110000
ERBB2IP   110000 perm   32 sec   (3439 perm/sec)   p_kst 4.162364e-01   p_cons 1.440909e-02   p_joint 5.160909e-02

Outputting figure to mutsig2_images.part000000000057/ERBB2IP.5_4208_110000_0.41624_0.014409_0.051609.png
                gene_name: ERBB2IP
               theta_stop: 0.098 
                    nperm: 110000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.014 
      ci_cons_bounds_left: 0.014 
     ci_cons_bounds_right: 0.015 
                  p_joint: 0.052 
     ci_joint_bounds_left: 0.050 
    ci_joint_bounds_right: 0.053 

Current progress: 44 percent done.
ENPP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.125513e-02	ci left: 6.016648e-01	ci right 6.208704e-01	k: 6113	n:10000
Cons ci ratio: 5.644165e-02	ci left: 3.161198e-01	ci right 3.345821e-01	k: 3253	n:10000
KS ci ratio: 4.163696e-02	ci left: 4.599781e-01	ci right 4.796395e-01	k: 4698	n:10000
ENPP4   10000 perm   2 sec   (5646 perm/sec)   p_kst 4.698000e-01   p_cons 3.253000e-01   p_joint 6.113000e-01

Outputting figure to mutsig2_images.part000000000057/ENPP4.4_1374_10000_0.4698_0.3253_0.6113.png
                gene_name: ENPP4
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 46 percent done.
ENTPD6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.274890e-02	ci left: 8.984685e-01	ci right 9.100947e-01	k: 9044	n:10000
KS ci ratio: 2.731636e-02	ci left: 6.638068e-01	ci right 6.822923e-01	k: 6731	n:10000
ENTPD6   10000 perm   2 sec   (6014 perm/sec)   p_kst 6.731000e-01   p_cons 9.044000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000057/ENTPD6.4_1518_10000_0.6731_0.9044_1.png
                gene_name: ENTPD6
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 47 percent done.
EOMES
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.434125e-02	ci left: 8.755155e-01	ci right 8.882611e-01	k: 8820	n:10000
KS ci ratio: 3.126828e-02	ci left: 6.014639e-01	ci right 6.206713e-01	k: 6111	n:10000
EOMES   10000 perm   2 sec   (5547 perm/sec)   p_kst 6.111000e-01   p_cons 8.820000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000057/EOMES.4_2085_10000_0.6111_0.882_1.png
                gene_name: EOMES
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 49 percent done.
EPHB6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.089463e-02	ci left: 6.071884e-01	ci right 6.263435e-01	k: 6168	n:10000
Cons ci ratio: 7.184476e-02	ci left: 2.210904e-01	ci right 2.376675e-01	k: 2293	n:10000
KS ci ratio: 1.572648e-02	ci left: 8.544725e-01	ci right 8.681163e-01	k: 8614	n:10000
EPHB6   10000 perm   2 sec   (5041 perm/sec)   p_kst 8.614000e-01   p_cons 2.293000e-01   p_joint 6.168000e-01

Outputting figure to mutsig2_images.part000000000057/EPHB6.4_3130_10000_0.8614_0.2293_0.6168.png
                gene_name: EPHB6
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 51 percent done.
EPX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.769573e-02	ci left: 6.576653e-01	ci right 6.762373e-01	k: 6670	n:10000
Cons ci ratio: 5.773929e-02	ci left: 3.062974e-01	ci right 3.246102e-01	k: 3154	n:10000
KS ci ratio: 3.446865e-02	ci left: 5.541131e-01	ci right 5.736497e-01	k: 5639	n:10000
EPX   10000 perm   2 sec   (5227 perm/sec)   p_kst 5.639000e-01   p_cons 3.154000e-01   p_joint 6.670000e-01

Outputting figure to mutsig2_images.part000000000057/EPX.4_2196_10000_0.5639_0.3154_0.667.png
                gene_name: EPX
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 53 percent done.
ERBB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.638676e-02	ci left: 5.272676e-01	ci right 5.469108e-01	k: 5371	n:10000
KS ci ratio: 2.874988e-02	ci left: 6.407601e-01	ci right 6.595523e-01	k: 6502	n:10000
ERBB3   10000 perm   2 sec   (4500 perm/sec)   p_kst 6.502000e-01   p_cons 5.371000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000057/ERBB3.4_4272_10000_0.6502_0.5371_1.png
                gene_name: ERBB3
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 54 percent done.
ENPP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.766457e-02	ci left: 6.581687e-01	ci right 6.767337e-01	k: 6675	n:10000
KS ci ratio: 3.202320e-02	ci left: 5.900191e-01	ci right 6.093228e-01	k: 5997	n:10000
ENPP6   10000 perm   2 sec   (5911 perm/sec)   p_kst 5.997000e-01   p_cons 6.675000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000057/ENPP6.3_1355_10000_0.5997_0.6675_1.png
                gene_name: ENPP6
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 56 percent done.
EPB41
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.986431e-02	ci left: 2.910276e-01	ci right 3.090890e-01	k: 3000	n:10000
Cons ci ratio: 6.478410e-02	ci left: 2.592386e-01	ci right 2.766968e-01	k: 2679	n:10000
KS ci ratio: 4.839296e-02	ci left: 3.864955e-01	ci right 4.057650e-01	k: 3961	n:10000
EPB41   10000 perm   2 sec   (5538 perm/sec)   p_kst 3.961000e-01   p_cons 2.679000e-01   p_joint 3.000000e-01

Outputting figure to mutsig2_images.part000000000057/EPB41.3_2692_10000_0.3961_0.2679_0.3.png
                gene_name: EPB41
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 58 percent done.
EPB41L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.551513e-01	ci left: 5.532768e-02	ci right 6.473065e-02	k: 599	n:10000
Cons ci ratio: 1.227782e-01	ci left: 8.679344e-02	ci right 9.824521e-02	k: 924	n:10000
KS ci ratio: 2.240477e-01	ci left: 2.636581e-02	ci right 3.311184e-02	k: 296	n:10000
EPB41L2   10000 perm   2 sec   (5360 perm/sec)   p_kst 2.960000e-02   p_cons 9.240000e-02   p_joint 5.990000e-02

Joint ci ratio: 1.281378e-01	ci left: 4.182901e-02	ci right 4.760429e-02	k: 893	n:20000
Cons ci ratio: 8.784308e-02	ci left: 8.655862e-02	ci right 9.456088e-02	k: 1810	n:20000
KS ci ratio: 1.569380e-01	ci left: 2.787170e-02	ci right 3.266616e-02	k: 604	n:20000
EPB41L2   20000 perm   4 sec   (4771 perm/sec)   p_kst 3.020000e-02   p_cons 9.050000e-02   p_joint 4.465000e-02

Joint ci ratio: 7.867054e-02	ci left: 7.341855e-02	ci right 7.946379e-02	k: 2292	n:30000
Cons ci ratio: 7.087383e-02	ci left: 8.924436e-02	ci right 9.583480e-02	k: 2775	n:30000
KS ci ratio: 1.296583e-01	ci left: 2.764661e-02	ci right 3.151188e-02	k: 886	n:30000
EPB41L2   30000 perm   7 sec   (4515 perm/sec)   p_kst 2.953333e-02   p_cons 9.250000e-02   p_joint 7.640000e-02

Joint ci ratio: 5.965657e-02	ci left: 9.451114e-02	ci right 1.003475e-01	k: 3896	n:40000
Cons ci ratio: 6.175948e-02	ci left: 8.866710e-02	ci right 9.434236e-02	k: 3659	n:40000
KS ci ratio: 1.140727e-01	ci left: 2.703697e-02	ci right 3.033192e-02	k: 1146	n:40000
EPB41L2   40000 perm   9 sec   (4354 perm/sec)   p_kst 2.865000e-02   p_cons 9.147500e-02   p_joint 9.740000e-02

Joint ci ratio: 6.026362e-02	ci left: 7.566396e-02	ci right 8.038517e-02	k: 3900	n:50000
Cons ci ratio: 5.880448e-02	ci left: 7.921482e-02	ci right 8.403389e-02	k: 4080	n:50000
KS ci ratio: 1.024630e-01	ci left: 2.698092e-02	ci right 2.991417e-02	k: 1421	n:50000
EPB41L2   50000 perm   12 sec   (4225 perm/sec)   p_kst 2.842000e-02   p_cons 8.160000e-02   p_joint 7.800000e-02

Joint ci ratio: 5.718276e-02	ci left: 7.055260e-02	ci right 7.472219e-02	k: 4357	n:60000
Cons ci ratio: 5.051271e-02	ci left: 8.890789e-02	ci right 9.353173e-02	k: 5472	n:60000
KS ci ratio: 9.374505e-02	ci left: 2.698764e-02	ci right 2.965825e-02	k: 1698	n:60000
EPB41L2   60000 perm   15 sec   (4132 perm/sec)   p_kst 2.830000e-02   p_cons 9.120000e-02   p_joint 7.261667e-02

Outputting figure to mutsig2_images.part000000000057/EPB41L2.3_3090_60000_0.0283_0.0912_0.072617.png
                gene_name: EPB41L2
               theta_stop: 0.094 
                    nperm: 60000 
                     p_ks: 0.028 
        ci_ks_bounds_left: 0.027 
       ci_ks_bounds_right: 0.030 
                   p_cons: 0.091 
      ci_cons_bounds_left: 0.089 
     ci_cons_bounds_right: 0.094 
                  p_joint: 0.073 
     ci_joint_bounds_left: 0.071 
    ci_joint_bounds_right: 0.075 

Current progress: 60 percent done.
EPB41L4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.260207e-02	ci left: 4.485975e-01	ci right 4.682268e-01	k: 4584	n:10000
KS ci ratio: 2.052141e-02	ci left: 7.767143e-01	ci right 7.929195e-01	k: 7849	n:10000
EPB41L4B   10000 perm   2 sec   (5355 perm/sec)   p_kst 7.849000e-01   p_cons 4.584000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000057/EPB41L4B.3_2959_10000_0.7849_0.4584_1.png
                gene_name: EPB41L4B
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 61 percent done.
EPHA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.271914e-02	ci left: 2.720070e-01	ci right 2.897208e-01	k: 2808	n:10000
Cons ci ratio: 1.390683e-01	ci left: 6.846013e-02	ci right 7.878990e-02	k: 735	n:10000
KS ci ratio: 1.690602e-02	ci left: 8.359236e-01	ci right 8.502760e-01	k: 8432	n:10000
EPHA1   10000 perm   2 sec   (5244 perm/sec)   p_kst 8.432000e-01   p_cons 7.350000e-02   p_joint 2.808000e-01

Joint ci ratio: 5.224508e-02	ci left: 2.138788e-01	ci right 2.254028e-01	k: 4392	n:20000
Cons ci ratio: 9.751825e-02	ci left: 7.109338e-02	ci right 7.843082e-02	k: 1494	n:20000
KS ci ratio: 1.199887e-02	ci left: 8.370730e-01	ci right 8.472274e-01	k: 16844	n:20000
EPHA1   20000 perm   4 sec   (4712 perm/sec)   p_kst 8.422000e-01   p_cons 7.470000e-02   p_joint 2.196000e-01

Outputting figure to mutsig2_images.part000000000057/EPHA1.3_3003_20000_0.8422_0.0747_0.2196.png
                gene_name: EPHA1
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.075 
      ci_cons_bounds_left: 0.071 
     ci_cons_bounds_right: 0.078 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 63 percent done.
EPHB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.787022e-01	ci left: 8.595766e-03	ci right 1.269681e-02	k: 105	n:10000
Cons ci ratio: 1.869758e-01	ci left: 3.815245e-02	ci right 4.611708e-02	k: 420	n:10000
KS ci ratio: 3.289572e-01	ci left: 1.169777e-02	ci right 1.639161e-02	k: 139	n:10000
EPHB4   10000 perm   2 sec   (5301 perm/sec)   p_kst 1.390000e-02   p_cons 4.200000e-02   p_joint 1.050000e-02

Joint ci ratio: 4.643804e-01	ci left: 2.729407e-03	ci right 4.420000e-03	k: 70	n:20000
Cons ci ratio: 1.285145e-01	ci left: 4.158670e-02	ci right 4.734668e-02	k: 888	n:20000
KS ci ratio: 2.285098e-01	ci left: 1.284199e-02	ci right 1.620133e-02	k: 289	n:20000
EPHB4   20000 perm   4 sec   (4756 perm/sec)   p_kst 1.445000e-02   p_cons 4.440000e-02   p_joint 3.500000e-03

Joint ci ratio: 3.120252e-01	ci left: 4.417678e-03	ci right 6.080355e-03	k: 156	n:30000
Cons ci ratio: 1.054090e-01	ci left: 4.173925e-02	ci right 4.641622e-02	k: 1321	n:30000
KS ci ratio: 1.885683e-01	ci left: 1.285992e-02	ci right 1.556869e-02	k: 425	n:30000
EPHB4   30000 perm   7 sec   (4532 perm/sec)   p_kst 1.416667e-02   p_cons 4.403333e-02   p_joint 5.200000e-03

Joint ci ratio: 3.073562e-01	ci left: 3.428260e-03	ci right 4.695408e-03	k: 161	n:40000
Cons ci ratio: 9.171438e-02	ci left: 4.166844e-02	ci right 4.569814e-02	k: 1746	n:40000
KS ci ratio: 1.650836e-01	ci left: 1.275159e-02	ci right 1.506977e-02	k: 555	n:40000
EPHB4   40000 perm   9 sec   (4403 perm/sec)   p_kst 1.387500e-02   p_cons 4.365000e-02   p_joint 4.025000e-03

Joint ci ratio: 1.639796e-01	ci left: 1.037279e-02	ci right 1.224459e-02	k: 564	n:50000
Cons ci ratio: 8.159829e-02	ci left: 4.231686e-02	ci right 4.593631e-02	k: 2205	n:50000
KS ci ratio: 1.484154e-01	ci left: 1.273795e-02	ci right 1.479907e-02	k: 687	n:50000
EPHB4   50000 perm   12 sec   (4280 perm/sec)   p_kst 1.374000e-02   p_cons 4.410000e-02   p_joint 1.128000e-02

Joint ci ratio: 1.543657e-01	ci left: 9.812005e-03	ci right 1.146917e-02	k: 637	n:60000
Cons ci ratio: 7.408278e-02	ci left: 4.292928e-02	ci right 4.624829e-02	k: 2674	n:60000
KS ci ratio: 1.342207e-01	ci left: 1.307513e-02	ci right 1.497231e-02	k: 840	n:60000
EPHB4   60000 perm   14 sec   (4183 perm/sec)   p_kst 1.400000e-02   p_cons 4.456667e-02   p_joint 1.061667e-02

Joint ci ratio: 1.554711e-01	ci left: 8.299922e-03	ci right 9.712657e-03	k: 629	n:70000
Cons ci ratio: 6.855101e-02	ci left: 4.309663e-02	ci right 4.616983e-02	k: 3123	n:70000
KS ci ratio: 1.231343e-01	ci left: 1.339197e-02	ci right 1.516291e-02	k: 998	n:70000
EPHB4   70000 perm   17 sec   (4096 perm/sec)   p_kst 1.425714e-02   p_cons 4.461429e-02   p_joint 8.985714e-03

Joint ci ratio: 1.828442e-01	ci left: 5.190067e-03	ci right 6.246264e-03	k: 456	n:80000
Cons ci ratio: 6.410754e-02	ci left: 4.321679e-02	ci right 4.609135e-02	k: 3571	n:80000
KS ci ratio: 1.136127e-01	ci left: 1.382882e-02	ci right 1.550664e-02	k: 1172	n:80000
EPHB4   80000 perm   20 sec   (4018 perm/sec)   p_kst 1.465000e-02   p_cons 4.463750e-02   p_joint 5.700000e-03

Joint ci ratio: 1.868475e-01	ci left: 4.411880e-03	ci right 5.331590e-03	k: 437	n:90000
Cons ci ratio: 6.040582e-02	ci left: 4.334813e-02	ci right 4.605909e-02	k: 4022	n:90000
KS ci ratio: 1.075972e-01	ci left: 1.375078e-02	ci right 1.532519e-02	k: 1307	n:90000
EPHB4   90000 perm   23 sec   (3943 perm/sec)   p_kst 1.452222e-02   p_cons 4.468889e-02   p_joint 4.855556e-03

Joint ci ratio: 1.587551e-01	ci left: 5.578745e-03	ci right 6.550240e-03	k: 605	n:100000
Cons ci ratio: 5.362244e-02	ci left: 4.936806e-02	ci right 5.209807e-02	k: 5072	n:100000
KS ci ratio: 1.022305e-01	ci left: 1.374871e-02	ci right 1.523965e-02	k: 1448	n:100000
EPHB4   100000 perm   26 sec   (3871 perm/sec)   p_kst 1.448000e-02   p_cons 5.072000e-02   p_joint 6.050000e-03

Joint ci ratio: 1.524757e-01	ci left: 5.517159e-03	ci right 6.436454e-03	k: 656	n:110000
Cons ci ratio: 5.115744e-02	ci left: 4.937494e-02	ci right 5.197609e-02	k: 5573	n:110000
KS ci ratio: 9.762533e-02	ci left: 1.373975e-02	ci right 1.515875e-02	k: 1588	n:110000
EPHB4   110000 perm   29 sec   (3809 perm/sec)   p_kst 1.443636e-02   p_cons 5.066364e-02   p_joint 5.963636e-03

Joint ci ratio: 1.441473e-01	ci left: 5.683323e-03	ci right 6.574131e-03	k: 734	n:120000
Cons ci ratio: 4.906769e-02	ci left: 4.925953e-02	ci right 5.174558e-02	k: 6059	n:120000
KS ci ratio: 9.392251e-02	ci left: 1.363586e-02	ci right 1.498777e-02	k: 1716	n:120000
EPHB4   120000 perm   32 sec   (3742 perm/sec)   p_kst 1.430000e-02   p_cons 5.049167e-02   p_joint 6.116667e-03

Joint ci ratio: 1.400266e-01	ci left: 5.572552e-03	ci right 6.418943e-03	k: 778	n:130000
Cons ci ratio: 4.693976e-02	ci left: 4.971900e-02	ci right 5.211647e-02	k: 6618	n:130000
KS ci ratio: 9.021531e-02	ci left: 1.366914e-02	ci right 1.496804e-02	k: 1860	n:130000
EPHB4   130000 perm   35 sec   (3682 perm/sec)   p_kst 1.430769e-02   p_cons 5.090769e-02   p_joint 5.984615e-03

Joint ci ratio: 1.342046e-01	ci left: 5.650482e-03	ci right 6.470178e-03	k: 847	n:140000
Cons ci ratio: 4.515610e-02	ci left: 4.992400e-02	ci right 5.223749e-02	k: 7150	n:140000
KS ci ratio: 8.742519e-02	ci left: 1.353782e-02	ci right 1.478242e-02	k: 1981	n:140000
EPHB4   140000 perm   39 sec   (3626 perm/sec)   p_kst 1.415000e-02   p_cons 5.107143e-02   p_joint 6.050000e-03

Joint ci ratio: 1.492140e-01	ci left: 4.238159e-03	ci right 4.927873e-03	k: 686	n:150000
Cons ci ratio: 4.364832e-02	ci left: 4.991182e-02	ci right 5.214557e-02	k: 7653	n:150000
KS ci ratio: 8.445213e-02	ci left: 1.356163e-02	ci right 1.476392e-02	k: 2123	n:150000
EPHB4   150000 perm   42 sec   (3571 perm/sec)   p_kst 1.415333e-02   p_cons 5.102000e-02   p_joint 4.573333e-03

Joint ci ratio: 1.444560e-01	ci left: 4.250214e-03	ci right 4.917933e-03	k: 732	n:160000
Cons ci ratio: 4.218144e-02	ci left: 5.013124e-02	ci right 5.229756e-02	k: 8193	n:160000
KS ci ratio: 8.176312e-02	ci left: 1.358309e-02	ci right 1.474711e-02	k: 2265	n:160000
EPHB4   160000 perm   46 sec   (3502 perm/sec)   p_kst 1.415625e-02   p_cons 5.120625e-02   p_joint 4.575000e-03

Joint ci ratio: 1.335663e-01	ci left: 4.704352e-03	ci right 5.383285e-03	k: 856	n:170000
Cons ci ratio: 4.085066e-02	ci left: 5.033176e-02	ci right 5.243652e-02	k: 8734	n:170000
KS ci ratio: 7.941605e-02	ci left: 1.356796e-02	ci right 1.469576e-02	k: 2401	n:170000
EPHB4   170000 perm   49 sec   (3444 perm/sec)   p_kst 1.412353e-02   p_cons 5.137647e-02   p_joint 5.035294e-03

Joint ci ratio: 1.299048e-01	ci left: 4.706250e-03	ci right 5.365402e-03	k: 905	n:180000
Cons ci ratio: 3.962485e-02	ci left: 5.054397e-02	ci right 5.259273e-02	k: 9281	n:180000
KS ci ratio: 7.749275e-02	ci left: 1.347319e-02	ci right 1.456477e-02	k: 2522	n:180000
EPHB4   180000 perm   53 sec   (3393 perm/sec)   p_kst 1.401111e-02   p_cons 5.156111e-02   p_joint 5.027778e-03

Joint ci ratio: 1.000432e-01	ci left: 7.614590e-03	ci right 8.421582e-03	k: 1522	n:190000
Cons ci ratio: 3.859223e-02	ci left: 5.051043e-02	ci right 5.250328e-02	k: 9785	n:190000
KS ci ratio: 7.527079e-02	ci left: 1.354365e-02	ci right 1.460809e-02	k: 2673	n:190000
EPHB4   190000 perm   57 sec   (3342 perm/sec)   p_kst 1.406842e-02   p_cons 5.150000e-02   p_joint 8.010526e-03

Joint ci ratio: 1.017255e-01	ci left: 6.994928e-03	ci right 7.749456e-03	k: 1473	n:200000
Cons ci ratio: 3.759400e-02	ci left: 5.058989e-02	ci right 5.253313e-02	k: 10311	n:200000
KS ci ratio: 7.349394e-02	ci left: 1.350928e-02	ci right 1.454488e-02	k: 2804	n:200000
EPHB4   200000 perm   61 sec   (3294 perm/sec)   p_kst 1.402000e-02   p_cons 5.155500e-02   p_joint 7.365000e-03

Joint ci ratio: 9.988367e-02	ci left: 6.917123e-03	ci right 7.648957e-03	k: 1528	n:210000
Cons ci ratio: 3.669979e-02	ci left: 5.058214e-02	ci right 5.247789e-02	k: 10820	n:210000
KS ci ratio: 7.201157e-02	ci left: 1.341296e-02	ci right 1.441957e-02	k: 2921	n:210000
EPHB4   210000 perm   65 sec   (3249 perm/sec)   p_kst 1.390952e-02   p_cons 5.152381e-02   p_joint 7.276190e-03

Outputting figure to mutsig2_images.part000000000057/EPHB4.3_3032_210000_0.01391_0.051524_0.0072762.png
                gene_name: EPHB4
               theta_stop: 0.100 
                    nperm: 210000 
                     p_ks: 0.014 
        ci_ks_bounds_left: 0.013 
       ci_ks_bounds_right: 0.014 
                   p_cons: 0.052 
      ci_cons_bounds_left: 0.051 
     ci_cons_bounds_right: 0.052 
                  p_joint: 0.0073 
     ci_joint_bounds_left: 0.0069 
    ci_joint_bounds_right: 0.0076 

Current progress: 65 percent done.
EPN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.187168e-02	ci left: 4.571824e-01	ci right 4.768369e-01	k: 4670	n:10000
Cons ci ratio: 1.072702e-02	ci left: 9.252359e-01	ci right 9.353117e-01	k: 9304	n:10000
KS ci ratio: 6.092113e-02	ci left: 2.837935e-01	ci right 3.017273e-01	k: 2927	n:10000
EPN1   10000 perm   2 sec   (5824 perm/sec)   p_kst 2.927000e-01   p_cons 9.304000e-01   p_joint 4.670000e-01

Outputting figure to mutsig2_images.part000000000057/EPN1.3_2112_10000_0.2927_0.9304_0.467.png
                gene_name: EPN1
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 67 percent done.
EPS8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.768949e-02	ci left: 6.577660e-01	ci right 6.763366e-01	k: 6671	n:10000
KS ci ratio: 2.784546e-02	ci left: 6.552495e-01	ci right 6.738545e-01	k: 6646	n:10000
EPS8   10000 perm   2 sec   (5190 perm/sec)   p_kst 6.646000e-01   p_cons 6.671000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000057/EPS8.3_2549_10000_0.6646_0.6671_1.png
                gene_name: EPS8
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
EPS8L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.489344e-02	ci left: 8.672346e-01	ci right 8.803468e-01	k: 8739	n:10000
KS ci ratio: 2.208869e-02	ci left: 7.504927e-01	ci right 7.673562e-01	k: 7590	n:10000
EPS8L1   10000 perm   2 sec   (5548 perm/sec)   p_kst 7.590000e-01   p_cons 8.739000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000057/EPS8L1.3_2300_10000_0.759_0.8739_1.png
                gene_name: EPS8L1
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
EPSTI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.056506e-01	ci left: 1.145714e-01	ci right 1.274503e-01	k: 1209	n:10000
Cons ci ratio: 3.824936e-02	ci left: 5.023507e-01	ci right 5.220421e-01	k: 5122	n:10000
KS ci ratio: 1.569683e-01	ci left: 5.407563e-02	ci right 6.338351e-02	k: 586	n:10000
EPSTI1   10000 perm   2 sec   (6043 perm/sec)   p_kst 5.860000e-02   p_cons 5.122000e-01   p_joint 1.209000e-01

Joint ci ratio: 7.301841e-02	ci left: 1.213321e-01	ci right 1.305770e-01	k: 2518	n:20000
Cons ci ratio: 2.611642e-02	ci left: 5.227538e-01	ci right 5.366375e-01	k: 10594	n:20000
KS ci ratio: 1.134279e-01	ci left: 5.314517e-02	ci right 5.958457e-02	k: 1126	n:20000
EPSTI1   20000 perm   4 sec   (5392 perm/sec)   p_kst 5.630000e-02   p_cons 5.297000e-01   p_joint 1.259000e-01

Joint ci ratio: 6.627493e-02	ci left: 1.009616e-01	ci right 1.079152e-01	k: 3132	n:30000
Cons ci ratio: 2.120918e-02	ci left: 5.267344e-01	ci right 5.380593e-01	k: 15972	n:30000
KS ci ratio: 9.348168e-02	ci left: 5.277268e-02	ci right 5.798051e-02	k: 1660	n:30000
EPSTI1   30000 perm   6 sec   (5091 perm/sec)   p_kst 5.533333e-02   p_cons 5.324000e-01   p_joint 1.044000e-01

Outputting figure to mutsig2_images.part000000000057/EPSTI1.3_1285_30000_0.055333_0.5324_0.1044.png
                gene_name: EPSTI1
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.055 
        ci_ks_bounds_left: 0.053 
       ci_ks_bounds_right: 0.058 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 72 percent done.
ERAS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.080061e-02	ci left: 7.720539e-01	ci right 7.883826e-01	k: 7803	n:10000
Cons ci ratio: 2.830889e-02	ci left: 6.478024e-01	ci right 6.665060e-01	k: 6572	n:10000
KS ci ratio: 1.627524e-02	ci left: 8.459069e-01	ci right 8.598868e-01	k: 8530	n:10000
ERAS   10000 perm   1 sec   (6756 perm/sec)   p_kst 8.530000e-01   p_cons 6.572000e-01   p_joint 7.803000e-01

Outputting figure to mutsig2_images.part000000000057/ERAS.3_706_10000_0.853_0.6572_0.7803.png
                gene_name: ERAS
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 74 percent done.
ENOPH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.746868e-02	ci left: 5.126548e-01	ci right 5.323321e-01	k: 5225	n:10000
KS ci ratio: 2.610159e-02	ci left: 6.836528e-01	ci right 7.018348e-01	k: 6928	n:10000
ENOPH1   10000 perm   1 sec   (7293 perm/sec)   p_kst 6.928000e-01   p_cons 5.225000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000057/ENOPH1.2_810_10000_0.6928_0.5225_1.png
                gene_name: ENOPH1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
ENOX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.344381e-02	ci left: 4.389180e-01	ci right 4.585119e-01	k: 4487	n:10000
Cons ci ratio: 1.829303e-01	ci left: 3.987233e-02	ci right 4.799604e-02	k: 438	n:10000
KS ci ratio: 2.248291e-01	ci left: 2.617677e-02	ci right 3.290101e-02	k: 294	n:10000
ENOX1   10000 perm   2 sec   (6029 perm/sec)   p_kst 2.940000e-02   p_cons 4.380000e-02   p_joint 4.487000e-01

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 1.255857e-01	ci left: 4.352588e-02	ci right 4.940689e-02	k: 928	n:20000
KS ci ratio: 1.530674e-01	ci left: 2.931517e-02	ci right 3.422220e-02	k: 634	n:20000
ENOX1   20000 perm   4 sec   (5311 perm/sec)   p_kst 3.170000e-02   p_cons 4.640000e-02   p_joint 1

Joint ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
Cons ci ratio: 1.035781e-01	ci left: 4.320175e-02	ci right 4.795342e-02	k: 1366	n:30000
KS ci ratio: 1.268842e-01	ci left: 2.887377e-02	ci right 3.281777e-02	k: 924	n:30000
ENOX1   30000 perm   6 sec   (5040 perm/sec)   p_kst 3.080000e-02   p_cons 4.553333e-02   p_joint 1

Joint ci ratio: 9.799510e-05	ci left: 9.999078e-01	ci right 1	k: 40000	n:40000
Cons ci ratio: 8.943632e-02	ci left: 4.377187e-02	ci right 4.789439e-02	k: 1832	n:40000
KS ci ratio: 1.089920e-01	ci left: 2.961518e-02	ci right 3.305331e-02	k: 1252	n:40000
ENOX1   40000 perm   8 sec   (4849 perm/sec)   p_kst 3.130000e-02   p_cons 4.580000e-02   p_joint 1

Joint ci ratio: 7.839686e-05	ci left: 9.999262e-01	ci right 1	k: 50000	n:50000
Cons ci ratio: 8.077810e-02	ci left: 4.316016e-02	ci right 4.681290e-02	k: 2248	n:50000
KS ci ratio: 9.830665e-02	ci left: 2.930287e-02	ci right 3.235192e-02	k: 1540	n:50000
ENOX1   50000 perm   11 sec   (4710 perm/sec)   p_kst 3.080000e-02   p_cons 4.496000e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000057/ENOX1.2_1988_50000_0.0308_0.04496_1.png
                gene_name: ENOX1
               theta_stop: 0.098 
                    nperm: 50000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.045 
      ci_cons_bounds_left: 0.043 
     ci_cons_bounds_right: 0.047 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
ENTPD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.682742e-02	ci left: 6.717631e-01	ci right 6.901314e-01	k: 6810	n:10000
Cons ci ratio: 1.671391e-02	ci left: 8.389786e-01	ci right 8.532191e-01	k: 8462	n:10000
KS ci ratio: 7.822696e-02	ci left: 1.927894e-01	ci right 2.085854e-01	k: 2006	n:10000
ENTPD2   10000 perm   2 sec   (6399 perm/sec)   p_kst 2.006000e-01   p_cons 8.462000e-01   p_joint 6.810000e-01

Outputting figure to mutsig2_images.part000000000057/ENTPD2.2_1524_10000_0.2006_0.8462_0.681.png
                gene_name: ENTPD2
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 79 percent done.
ENTPD7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.817290e-02	ci left: 5.033509e-01	ci right 5.230414e-01	k: 5132	n:10000
KS ci ratio: 1.826768e-02	ci left: 8.139530e-01	ci right 8.290592e-01	k: 8216	n:10000
ENTPD7   10000 perm   2 sec   (5947 perm/sec)   p_kst 8.216000e-01   p_cons 5.132000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000057/ENTPD7.2_1863_10000_0.8216_0.5132_1.png
                gene_name: ENTPD7
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
EPB41L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.319059e-03	ci left: 9.857766e-01	ci right 9.901322e-01	k: 9881	n:10000
Cons ci ratio: 5.540393e-02	ci left: 3.242591e-01	ci right 3.428380e-01	k: 3335	n:10000
KS ci ratio: 1.500129e-02	ci left: 8.656000e-01	ci right 8.787824e-01	k: 8723	n:10000
EPB41L1   10000 perm   2 sec   (5682 perm/sec)   p_kst 8.723000e-01   p_cons 3.335000e-01   p_joint 9.881000e-01

Outputting figure to mutsig2_images.part000000000057/EPB41L1.2_2730_10000_0.8723_0.3335_0.9881.png
                gene_name: EPB41L1
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 82 percent done.
EPB42
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.673992e-03	ci left: 9.490847e-01	ci right 9.574486e-01	k: 9534	n:10000
KS ci ratio: 1.681007e-02	ci left: 8.374510e-01	ci right 8.517477e-01	k: 8447	n:10000
EPB42   10000 perm   2 sec   (5998 perm/sec)   p_kst 8.447000e-01   p_cons 9.534000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000057/EPB42.2_2218_10000_0.8447_0.9534_1.png
                gene_name: EPB42
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
EPC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.064666e-02	ci left: 2.270141e-01	ci right 2.437403e-01	k: 2353	n:10000
Cons ci ratio: 1.105967e-01	ci left: 1.053948e-01	ci right 1.178325e-01	k: 1115	n:10000
KS ci ratio: 2.302997e-02	ci left: 7.347196e-01	ci right 7.519384e-01	k: 7434	n:10000
EPC2   10000 perm   2 sec   (5795 perm/sec)   p_kst 7.434000e-01   p_cons 1.115000e-01   p_joint 2.353000e-01

Joint ci ratio: 2.408836e-02	ci left: 5.628034e-01	ci right 5.765763e-01	k: 11394	n:20000
Cons ci ratio: 7.661082e-02	ci left: 1.112981e-01	ci right 1.202140e-01	k: 2314	n:20000
KS ci ratio: 1.641288e-02	ci left: 7.342643e-01	ci right 7.464657e-01	k: 14808	n:20000
EPC2   20000 perm   4 sec   (5120 perm/sec)   p_kst 7.404000e-01   p_cons 1.157000e-01   p_joint 5.697000e-01

Outputting figure to mutsig2_images.part000000000057/EPC2.2_2480_20000_0.7404_0.1157_0.5697.png
                gene_name: EPC2
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 86 percent done.
EPHA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.991661e-01	ci left: 1.458544e-03	ci right 3.449143e-03	k: 23	n:10000
Cons ci ratio: 1.011330e+00	ci left: 7.655977e-04	ci right 2.347848e-03	k: 14	n:10000
KS ci ratio: 9.397593e-02	ci left: 1.411914e-01	ci right 1.552142e-01	k: 1481	n:10000
EPHA2   10000 perm   2 sec   (5772 perm/sec)   p_kst 1.481000e-01   p_cons 1.400000e-03   p_joint 2.300000e-03

Joint ci ratio: 5.902971e-01	ci left: 1.556389e-03	ci right 2.894955e-03	k: 43	n:20000
Cons ci ratio: 7.273797e-01	ci left: 9.304852e-04	ci right 2.022759e-03	k: 28	n:20000
KS ci ratio: 6.540627e-02	ci left: 1.472474e-01	ci right 1.572539e-01	k: 3044	n:20000
EPHA2   20000 perm   4 sec   (5029 perm/sec)   p_kst 1.522000e-01   p_cons 1.400000e-03   p_joint 2.150000e-03

Joint ci ratio: 5.653410e-01	ci left: 1.151348e-03	ci right 2.082796e-03	k: 47	n:30000
Cons ci ratio: 5.839110e-01	ci left: 1.065878e-03	ci right 1.968437e-03	k: 44	n:30000
KS ci ratio: 5.380435e-02	ci left: 1.462734e-01	ci right 1.543944e-01	k: 4509	n:30000
EPHA2   30000 perm   6 sec   (4775 perm/sec)   p_kst 1.503000e-01   p_cons 1.466667e-03   p_joint 1.566667e-03

Joint ci ratio: 6.194887e-01	ci left: 6.934093e-04	ci right 1.332619e-03	k: 39	n:40000
Cons ci ratio: 5.056838e-01	ci left: 1.123022e-03	ci right 1.902236e-03	k: 59	n:40000
KS ci ratio: 4.624511e-02	ci left: 1.487421e-01	ci right 1.558084e-01	k: 6090	n:40000
EPHA2   40000 perm   9 sec   (4604 perm/sec)   p_kst 1.522500e-01   p_cons 1.475000e-03   p_joint 9.750000e-04

Joint ci ratio: 6.195523e-01	ci left: 5.547132e-04	ci right 1.066133e-03	k: 39	n:50000
Cons ci ratio: 4.584617e-01	ci left: 1.126877e-03	ci right 1.813103e-03	k: 72	n:50000
KS ci ratio: 4.153280e-02	ci left: 1.480702e-01	ci right 1.543703e-01	k: 7560	n:50000
EPHA2   50000 perm   11 sec   (4476 perm/sec)   p_kst 1.512000e-01   p_cons 1.440000e-03   p_joint 7.800000e-04

Joint ci ratio: 4.199598e-01	ci left: 1.146637e-03	ci right 1.769857e-03	k: 86	n:60000
Cons ci ratio: 4.199598e-01	ci left: 1.146637e-03	ci right 1.769857e-03	k: 86	n:60000
KS ci ratio: 3.787283e-02	ci left: 1.486232e-01	ci right 1.543772e-01	k: 9089	n:60000
EPHA2   60000 perm   14 sec   (4375 perm/sec)   p_kst 1.514833e-01   p_cons 1.433333e-03   p_joint 1.433333e-03

Joint ci ratio: 3.917171e-01	ci left: 1.149606e-03	ci right 1.721577e-03	k: 99	n:70000
Cons ci ratio: 3.917171e-01	ci left: 1.149606e-03	ci right 1.721577e-03	k: 99	n:70000
KS ci ratio: 3.505371e-02	ci left: 1.489080e-01	ci right 1.542352e-01	k: 10609	n:70000
EPHA2   70000 perm   16 sec   (4277 perm/sec)   p_kst 1.515571e-01   p_cons 1.414286e-03   p_joint 1.414286e-03

Joint ci ratio: 3.668777e-01	ci left: 1.164237e-03	ci right 1.697972e-03	k: 113	n:80000
Cons ci ratio: 3.668777e-01	ci left: 1.164237e-03	ci right 1.697972e-03	k: 113	n:80000
KS ci ratio: 3.277657e-02	ci left: 1.491833e-01	ci right 1.541669e-01	k: 12133	n:80000
EPHA2   80000 perm   19 sec   (4169 perm/sec)   p_kst 1.516625e-01   p_cons 1.412500e-03   p_joint 1.412500e-03

Joint ci ratio: 3.532109e-01	ci left: 1.125830e-03	ci right 1.618322e-03	k: 122	n:90000
Cons ci ratio: 3.532109e-01	ci left: 1.125830e-03	ci right 1.618322e-03	k: 122	n:90000
KS ci ratio: 3.100756e-02	ci left: 1.484567e-01	ci right 1.531436e-01	k: 13571	n:90000
EPHA2   90000 perm   22 sec   (4094 perm/sec)   p_kst 1.507889e-01   p_cons 1.355556e-03   p_joint 1.355556e-03

Joint ci ratio: 3.371504e-01	ci left: 1.122849e-03	ci right 1.586850e-03	k: 134	n:100000
Cons ci ratio: 3.371504e-01	ci left: 1.122849e-03	ci right 1.586850e-03	k: 134	n:100000
KS ci ratio: 2.946816e-02	ci left: 1.481300e-01	ci right 1.525703e-01	k: 15034	n:100000
EPHA2   100000 perm   25 sec   (4016 perm/sec)   p_kst 1.503400e-01   p_cons 1.340000e-03   p_joint 1.340000e-03

Joint ci ratio: 3.136271e-01	ci left: 1.196114e-03	ci right 1.649010e-03	k: 155	n:110000
Cons ci ratio: 3.136271e-01	ci left: 1.196114e-03	ci right 1.649010e-03	k: 155	n:110000
KS ci ratio: 2.815040e-02	ci left: 1.477500e-01	ci right 1.519776e-01	k: 16484	n:110000
EPHA2   110000 perm   28 sec   (3939 perm/sec)   p_kst 1.498545e-01   p_cons 1.409091e-03   p_joint 1.409091e-03

Joint ci ratio: 2.944266e-01	ci left: 1.258108e-03	ci right 1.699881e-03	k: 176	n:120000
Cons ci ratio: 2.944266e-01	ci left: 1.258108e-03	ci right 1.699881e-03	k: 176	n:120000
KS ci ratio: 2.688135e-02	ci left: 1.485061e-01	ci right 1.525608e-01	k: 18063	n:120000
EPHA2   120000 perm   31 sec   (3870 perm/sec)   p_kst 1.505250e-01   p_cons 1.466667e-03   p_joint 1.466667e-03

Joint ci ratio: 2.856875e-01	ci left: 1.239790e-03	ci right 1.659877e-03	k: 187	n:130000
Cons ci ratio: 2.856875e-01	ci left: 1.239790e-03	ci right 1.659877e-03	k: 187	n:130000
KS ci ratio: 2.582936e-02	ci left: 1.485603e-01	ci right 1.524553e-01	k: 19565	n:130000
EPHA2   130000 perm   34 sec   (3801 perm/sec)   p_kst 1.505000e-01   p_cons 1.438462e-03   p_joint 1.438462e-03

Joint ci ratio: 2.735832e-01	ci left: 1.264153e-03	ci right 1.671230e-03	k: 204	n:140000
Cons ci ratio: 2.735832e-01	ci left: 1.264153e-03	ci right 1.671230e-03	k: 204	n:140000
KS ci ratio: 2.488360e-02	ci left: 1.486947e-01	ci right 1.524484e-01	k: 21079	n:140000
EPHA2   140000 perm   37 sec   (3736 perm/sec)   p_kst 1.505643e-01   p_cons 1.457143e-03   p_joint 1.457143e-03

Joint ci ratio: 2.640916e-01	ci left: 1.273139e-03	ci right 1.666536e-03	k: 219	n:150000
Cons ci ratio: 2.640916e-01	ci left: 1.273139e-03	ci right 1.666536e-03	k: 219	n:150000
KS ci ratio: 2.398905e-02	ci left: 1.492976e-01	ci right 1.529292e-01	k: 22666	n:150000
EPHA2   150000 perm   41 sec   (3679 perm/sec)   p_kst 1.511067e-01   p_cons 1.460000e-03   p_joint 1.460000e-03

Joint ci ratio: 2.566199e-01	ci left: 1.269516e-03	ci right 1.648918e-03	k: 232	n:160000
Cons ci ratio: 2.566199e-01	ci left: 1.269516e-03	ci right 1.648918e-03	k: 232	n:160000
KS ci ratio: 2.331719e-02	ci left: 1.483718e-01	ci right 1.518784e-01	k: 24019	n:160000
EPHA2   160000 perm   44 sec   (3620 perm/sec)   p_kst 1.501187e-01   p_cons 1.450000e-03   p_joint 1.450000e-03

Joint ci ratio: 2.502584e-01	ci left: 1.260943e-03	ci right 1.626986e-03	k: 244	n:170000
Cons ci ratio: 2.502584e-01	ci left: 1.260943e-03	ci right 1.626986e-03	k: 244	n:170000
KS ci ratio: 2.263574e-02	ci left: 1.482588e-01	ci right 1.516590e-01	k: 25492	n:170000
EPHA2   170000 perm   48 sec   (3558 perm/sec)   p_kst 1.499529e-01   p_cons 1.435294e-03   p_joint 1.435294e-03

Joint ci ratio: 2.415402e-01	ci left: 1.284732e-03	ci right 1.642744e-03	k: 262	n:180000
Cons ci ratio: 2.415402e-01	ci left: 1.284732e-03	ci right 1.642744e-03	k: 262	n:180000
KS ci ratio: 2.198103e-02	ci left: 1.485026e-01	ci right 1.518086e-01	k: 27027	n:180000
EPHA2   180000 perm   52 sec   (3490 perm/sec)   p_kst 1.501500e-01   p_cons 1.455556e-03   p_joint 1.455556e-03

Joint ci ratio: 2.357842e-01	ci left: 1.281445e-03	ci right 1.628789e-03	k: 275	n:190000
Cons ci ratio: 2.357842e-01	ci left: 1.281445e-03	ci right 1.628789e-03	k: 275	n:190000
KS ci ratio: 2.138619e-02	ci left: 1.486487e-01	ci right 1.518673e-01	k: 28548	n:190000
EPHA2   190000 perm   55 sec   (3434 perm/sec)   p_kst 1.502526e-01   p_cons 1.447368e-03   p_joint 1.447368e-03

Joint ci ratio: 2.320347e-01	ci left: 1.259734e-03	ci right 1.594984e-03	k: 284	n:200000
Cons ci ratio: 2.320347e-01	ci left: 1.259734e-03	ci right 1.594984e-03	k: 284	n:200000
KS ci ratio: 2.086044e-02	ci left: 1.484974e-01	ci right 1.516327e-01	k: 30012	n:200000
EPHA2   200000 perm   59 sec   (3385 perm/sec)   p_kst 1.500600e-01   p_cons 1.420000e-03   p_joint 1.420000e-03

Joint ci ratio: 2.269178e-01	ci left: 1.258093e-03	ci right 1.584490e-03	k: 297	n:210000
Cons ci ratio: 2.269178e-01	ci left: 1.258093e-03	ci right 1.584490e-03	k: 297	n:210000
KS ci ratio: 2.037507e-02	ci left: 1.483188e-01	ci right 1.513766e-01	k: 31467	n:210000
EPHA2   210000 perm   63 sec   (3328 perm/sec)   p_kst 1.498429e-01   p_cons 1.414286e-03   p_joint 1.414286e-03

Joint ci ratio: 2.186329e-01	ci left: 1.299623e-03	ci right 1.622831e-03	k: 320	n:220000
Cons ci ratio: 2.186329e-01	ci left: 1.299623e-03	ci right 1.622831e-03	k: 320	n:220000
KS ci ratio: 1.989721e-02	ci left: 1.484741e-01	ci right 1.514624e-01	k: 32992	n:220000
EPHA2   220000 perm   67 sec   (3282 perm/sec)   p_kst 1.499636e-01   p_cons 1.454545e-03   p_joint 1.454545e-03

Joint ci ratio: 2.153071e-01	ci left: 1.284233e-03	ci right 1.598112e-03	k: 330	n:230000
Cons ci ratio: 2.153071e-01	ci left: 1.284233e-03	ci right 1.598112e-03	k: 330	n:230000
KS ci ratio: 1.946174e-02	ci left: 1.484823e-01	ci right 1.514048e-01	k: 34486	n:230000
EPHA2   230000 perm   71 sec   (3231 perm/sec)   p_kst 1.499391e-01   p_cons 1.434783e-03   p_joint 1.434783e-03

Joint ci ratio: 2.105881e-01	ci left: 1.289890e-03	ci right 1.597352e-03	k: 345	n:240000
Cons ci ratio: 2.105881e-01	ci left: 1.289890e-03	ci right 1.597352e-03	k: 345	n:240000
KS ci ratio: 1.905211e-02	ci left: 1.485113e-01	ci right 1.513721e-01	k: 35985	n:240000
EPHA2   240000 perm   75 sec   (3187 perm/sec)   p_kst 1.499375e-01   p_cons 1.437500e-03   p_joint 1.437500e-03

Joint ci ratio: 2.044717e-01	ci left: 1.317932e-03	ci right 1.621814e-03	k: 366	n:250000
Cons ci ratio: 2.044717e-01	ci left: 1.317932e-03	ci right 1.621814e-03	k: 366	n:250000
KS ci ratio: 1.867756e-02	ci left: 1.483992e-01	ci right 1.512010e-01	k: 37449	n:250000
EPHA2   250000 perm   79 sec   (3145 perm/sec)   p_kst 1.497960e-01   p_cons 1.464000e-03   p_joint 1.464000e-03

Joint ci ratio: 1.993742e-01	ci left: 1.336626e-03	ci right 1.636201e-03	k: 385	n:260000
Cons ci ratio: 1.993742e-01	ci left: 1.336626e-03	ci right 1.636201e-03	k: 385	n:260000
KS ci ratio: 1.831071e-02	ci left: 1.484839e-01	ci right 1.512316e-01	k: 38962	n:260000
EPHA2   260000 perm   84 sec   (3106 perm/sec)   p_kst 1.498538e-01   p_cons 1.480769e-03   p_joint 1.480769e-03

Joint ci ratio: 1.963466e-01	ci left: 1.329364e-03	ci right 1.622245e-03	k: 397	n:270000
Cons ci ratio: 1.963466e-01	ci left: 1.329364e-03	ci right 1.622245e-03	k: 397	n:270000
KS ci ratio: 1.796179e-02	ci left: 1.486034e-01	ci right 1.513004e-01	k: 40486	n:270000
EPHA2   270000 perm   88 sec   (3067 perm/sec)   p_kst 1.499481e-01   p_cons 1.470370e-03   p_joint 1.470370e-03

Joint ci ratio: 1.925147e-01	ci left: 1.336249e-03	ci right 1.624228e-03	k: 413	n:280000
Cons ci ratio: 1.925147e-01	ci left: 1.336249e-03	ci right 1.624228e-03	k: 413	n:280000
KS ci ratio: 1.764072e-02	ci left: 1.485903e-01	ci right 1.512384e-01	k: 41975	n:280000
EPHA2   280000 perm   92 sec   (3029 perm/sec)   p_kst 1.499107e-01   p_cons 1.475000e-03   p_joint 1.475000e-03

Joint ci ratio: 1.893402e-01	ci left: 1.336139e-03	ci right 1.618801e-03	k: 427	n:290000
Cons ci ratio: 1.893402e-01	ci left: 1.336139e-03	ci right 1.618801e-03	k: 427	n:290000
KS ci ratio: 1.732480e-02	ci left: 1.487469e-01	ci right 1.513498e-01	k: 43513	n:290000
EPHA2   290000 perm   97 sec   (2991 perm/sec)   p_kst 1.500448e-01   p_cons 1.472414e-03   p_joint 1.472414e-03

Joint ci ratio: 1.861069e-01	ci left: 1.339252e-03	ci right 1.617188e-03	k: 442	n:300000
Cons ci ratio: 1.861069e-01	ci left: 1.339252e-03	ci right 1.617188e-03	k: 442	n:300000
KS ci ratio: 1.702882e-02	ci left: 1.488402e-01	ci right 1.513999e-01	k: 45035	n:300000
EPHA2   300000 perm   102 sec   (2953 perm/sec)   p_kst 1.501167e-01   p_cons 1.473333e-03   p_joint 1.473333e-03

Joint ci ratio: 1.834355e-01	ci left: 1.336046e-03	ci right 1.608894e-03	k: 455	n:310000
Cons ci ratio: 1.834355e-01	ci left: 1.336046e-03	ci right 1.608894e-03	k: 455	n:310000
KS ci ratio: 1.676085e-02	ci left: 1.487254e-01	ci right 1.512424e-01	k: 46494	n:310000
EPHA2   310000 perm   106 sec   (2914 perm/sec)   p_kst 1.499806e-01   p_cons 1.467742e-03   p_joint 1.467742e-03

Joint ci ratio: 1.818492e-01	ci left: 1.318150e-03	ci right 1.584759e-03	k: 463	n:320000
Cons ci ratio: 1.818492e-01	ci left: 1.318150e-03	ci right 1.584759e-03	k: 463	n:320000
KS ci ratio: 1.649463e-02	ci left: 1.487800e-01	ci right 1.512576e-01	k: 48005	n:320000
EPHA2   320000 perm   111 sec   (2875 perm/sec)   p_kst 1.500156e-01   p_cons 1.446875e-03   p_joint 1.446875e-03

Joint ci ratio: 1.806870e-01	ci left: 1.295562e-03	ci right 1.555744e-03	k: 469	n:330000
Cons ci ratio: 1.806870e-01	ci left: 1.295562e-03	ci right 1.555744e-03	k: 469	n:330000
KS ci ratio: 1.624263e-02	ci left: 1.488014e-01	ci right 1.512411e-01	k: 49506	n:330000
EPHA2   330000 perm   116 sec   (2841 perm/sec)   p_kst 1.500182e-01   p_cons 1.421212e-03   p_joint 1.421212e-03

Joint ci ratio: 1.778708e-01	ci left: 1.299595e-03	ci right 1.556082e-03	k: 484	n:340000
Cons ci ratio: 1.778708e-01	ci left: 1.299595e-03	ci right 1.556082e-03	k: 484	n:340000
KS ci ratio: 1.600258e-02	ci left: 1.488101e-01	ci right 1.512135e-01	k: 51003	n:340000
EPHA2   340000 perm   121 sec   (2807 perm/sec)   p_kst 1.500088e-01   p_cons 1.423529e-03   p_joint 1.423529e-03

Joint ci ratio: 1.757109e-01	ci left: 1.295232e-03	ci right 1.547424e-03	k: 496	n:350000
Cons ci ratio: 1.757109e-01	ci left: 1.295232e-03	ci right 1.547424e-03	k: 496	n:350000
KS ci ratio: 1.577128e-02	ci left: 1.488441e-01	ci right 1.512131e-01	k: 52509	n:350000
EPHA2   350000 perm   126 sec   (2772 perm/sec)   p_kst 1.500257e-01   p_cons 1.417143e-03   p_joint 1.417143e-03

Joint ci ratio: 1.717789e-01	ci left: 1.320366e-03	ci right 1.571102e-03	k: 519	n:360000
Cons ci ratio: 1.717789e-01	ci left: 1.320366e-03	ci right 1.571102e-03	k: 519	n:360000
KS ci ratio: 1.555243e-02	ci left: 1.488323e-01	ci right 1.511678e-01	k: 53999	n:360000
EPHA2   360000 perm   131 sec   (2741 perm/sec)   p_kst 1.499972e-01   p_cons 1.441667e-03   p_joint 1.441667e-03

Joint ci ratio: 1.704741e-01	ci left: 1.305375e-03	ci right 1.551188e-03	k: 527	n:370000
Cons ci ratio: 1.704741e-01	ci left: 1.305375e-03	ci right 1.551188e-03	k: 527	n:370000
KS ci ratio: 1.533611e-02	ci left: 1.489263e-01	ci right 1.512305e-01	k: 55528	n:370000
EPHA2   370000 perm   137 sec   (2704 perm/sec)   p_kst 1.500757e-01   p_cons 1.424324e-03   p_joint 1.424324e-03

Joint ci ratio: 1.681028e-01	ci left: 1.308824e-03	ci right 1.551512e-03	k: 542	n:380000
Cons ci ratio: 1.681028e-01	ci left: 1.308824e-03	ci right 1.551512e-03	k: 542	n:380000
KS ci ratio: 1.513544e-02	ci left: 1.489002e-01	ci right 1.511736e-01	k: 57013	n:380000
EPHA2   380000 perm   142 sec   (2675 perm/sec)   p_kst 1.500342e-01   p_cons 1.426316e-03   p_joint 1.426316e-03

Joint ci ratio: 1.655311e-01	ci left: 1.317035e-03	ci right 1.557137e-03	k: 559	n:390000
Cons ci ratio: 1.655311e-01	ci left: 1.317035e-03	ci right 1.557137e-03	k: 559	n:390000
KS ci ratio: 1.494725e-02	ci left: 1.487938e-01	ci right 1.510371e-01	k: 58466	n:390000
EPHA2   390000 perm   147 sec   (2646 perm/sec)   p_kst 1.499128e-01   p_cons 1.433333e-03   p_joint 1.433333e-03

Joint ci ratio: 1.635000e-01	ci left: 1.317668e-03	ci right 1.554648e-03	k: 573	n:400000
Cons ci ratio: 1.635000e-01	ci left: 1.317668e-03	ci right 1.554648e-03	k: 573	n:400000
KS ci ratio: 1.475607e-02	ci left: 1.488623e-01	ci right 1.510777e-01	k: 59987	n:400000
EPHA2   400000 perm   153 sec   (2617 perm/sec)   p_kst 1.499675e-01   p_cons 1.432500e-03   p_joint 1.432500e-03

Joint ci ratio: 1.616797e-01	ci left: 1.315947e-03	ci right 1.549726e-03	k: 586	n:410000
Cons ci ratio: 1.616797e-01	ci left: 1.315947e-03	ci right 1.549726e-03	k: 586	n:410000
KS ci ratio: 1.457399e-02	ci left: 1.488937e-01	ci right 1.510820e-01	k: 61494	n:410000
EPHA2   410000 perm   158 sec   (2588 perm/sec)   p_kst 1.499854e-01   p_cons 1.429268e-03   p_joint 1.429268e-03

Joint ci ratio: 1.605903e-01	ci left: 1.302894e-03	ci right 1.532644e-03	k: 594	n:420000
Cons ci ratio: 1.605903e-01	ci left: 1.302894e-03	ci right 1.532644e-03	k: 594	n:420000
KS ci ratio: 1.440158e-02	ci left: 1.488691e-01	ci right 1.510310e-01	k: 62978	n:420000
EPHA2   420000 perm   164 sec   (2560 perm/sec)   p_kst 1.499476e-01   p_cons 1.414286e-03   p_joint 1.414286e-03

Joint ci ratio: 1.591267e-01	ci left: 1.297152e-03	ci right 1.523606e-03	k: 605	n:430000
Cons ci ratio: 1.591267e-01	ci left: 1.297152e-03	ci right 1.523606e-03	k: 605	n:430000
KS ci ratio: 1.422606e-02	ci left: 1.490081e-01	ci right 1.511454e-01	k: 64532	n:430000
EPHA2   430000 perm   170 sec   (2532 perm/sec)   p_kst 1.500744e-01   p_cons 1.406977e-03   p_joint 1.406977e-03

Joint ci ratio: 1.571930e-01	ci left: 1.300413e-03	ci right 1.524417e-03	k: 620	n:440000
Cons ci ratio: 1.571930e-01	ci left: 1.300413e-03	ci right 1.524417e-03	k: 620	n:440000
KS ci ratio: 1.406758e-02	ci left: 1.489461e-01	ci right 1.510585e-01	k: 66000	n:440000
EPHA2   440000 perm   176 sec   (2504 perm/sec)   p_kst 1.500000e-01   p_cons 1.409091e-03   p_joint 1.409091e-03

Joint ci ratio: 1.556962e-01	ci left: 1.297137e-03	ci right 1.518251e-03	k: 632	n:450000
Cons ci ratio: 1.556962e-01	ci left: 1.297137e-03	ci right 1.518251e-03	k: 632	n:450000
KS ci ratio: 1.390664e-02	ci left: 1.490266e-01	ci right 1.511157e-01	k: 67531	n:450000
EPHA2   450000 perm   182 sec   (2478 perm/sec)   p_kst 1.500689e-01   p_cons 1.404444e-03   p_joint 1.404444e-03

Joint ci ratio: 1.531750e-01	ci left: 1.312828e-03	ci right 1.532660e-03	k: 653	n:460000
Cons ci ratio: 1.531750e-01	ci left: 1.312828e-03	ci right 1.532660e-03	k: 653	n:460000
KS ci ratio: 1.375415e-02	ci left: 1.490473e-01	ci right 1.511136e-01	k: 69036	n:460000
EPHA2   460000 perm   188 sec   (2450 perm/sec)   p_kst 1.500783e-01   p_cons 1.419565e-03   p_joint 1.419565e-03

Joint ci ratio: 1.511090e-01	ci left: 1.321736e-03	ci right 1.539804e-03	k: 671	n:470000
Cons ci ratio: 1.511090e-01	ci left: 1.321736e-03	ci right 1.539804e-03	k: 671	n:470000
KS ci ratio: 1.360770e-02	ci left: 1.490460e-01	ci right 1.510902e-01	k: 70531	n:470000
EPHA2   470000 perm   194 sec   (2423 perm/sec)   p_kst 1.500660e-01   p_cons 1.427660e-03   p_joint 1.427660e-03

Joint ci ratio: 1.497780e-01	ci left: 1.318258e-03	ci right 1.533665e-03	k: 683	n:480000
Cons ci ratio: 1.497780e-01	ci left: 1.318258e-03	ci right 1.533665e-03	k: 683	n:480000
KS ci ratio: 1.346187e-02	ci left: 1.491197e-01	ci right 1.511428e-01	k: 72062	n:480000
EPHA2   480000 perm   200 sec   (2399 perm/sec)   p_kst 1.501292e-01   p_cons 1.422917e-03   p_joint 1.422917e-03

Joint ci ratio: 1.476342e-01	ci left: 1.330653e-03	ci right 1.544699e-03	k: 703	n:490000
Cons ci ratio: 1.476342e-01	ci left: 1.330653e-03	ci right 1.544699e-03	k: 703	n:490000
KS ci ratio: 1.332160e-02	ci left: 1.491722e-01	ci right 1.511748e-01	k: 73584	n:490000
EPHA2   490000 perm   206 sec   (2375 perm/sec)   p_kst 1.501714e-01   p_cons 1.434694e-03   p_joint 1.434694e-03

Joint ci ratio: 1.459844e-01	ci left: 1.334865e-03	ci right 1.546980e-03	k: 719	n:500000
Cons ci ratio: 1.459844e-01	ci left: 1.334865e-03	ci right 1.546980e-03	k: 719	n:500000
KS ci ratio: 1.318520e-02	ci left: 1.492307e-01	ci right 1.512134e-01	k: 75110	n:500000
EPHA2   500000 perm   213 sec   (2350 perm/sec)   p_kst 1.502200e-01   p_cons 1.438000e-03   p_joint 1.438000e-03

Joint ci ratio: 1.443887e-01	ci left: 1.338924e-03	ci right 1.549158e-03	k: 735	n:510000
Cons ci ratio: 1.443887e-01	ci left: 1.338924e-03	ci right 1.549158e-03	k: 735	n:510000
KS ci ratio: 1.305853e-02	ci left: 1.491775e-01	ci right 1.511402e-01	k: 76580	n:510000
EPHA2   510000 perm   219 sec   (2326 perm/sec)   p_kst 1.501569e-01   p_cons 1.441176e-03   p_joint 1.441176e-03

Joint ci ratio: 1.433221e-01	ci left: 1.333568e-03	ci right 1.541281e-03	k: 746	n:520000
Cons ci ratio: 1.433221e-01	ci left: 1.333568e-03	ci right 1.541281e-03	k: 746	n:520000
KS ci ratio: 1.293709e-02	ci left: 1.490938e-01	ci right 1.510371e-01	k: 78033	n:520000
EPHA2   520000 perm   226 sec   (2304 perm/sec)   p_kst 1.500635e-01   p_cons 1.434615e-03   p_joint 1.434615e-03

Joint ci ratio: 1.414404e-01	ci left: 1.344798e-03	ci right 1.551279e-03	k: 766	n:530000
Cons ci ratio: 1.414404e-01	ci left: 1.344798e-03	ci right 1.551279e-03	k: 766	n:530000
KS ci ratio: 1.281585e-02	ci left: 1.490754e-01	ci right 1.510001e-01	k: 79519	n:530000
EPHA2   530000 perm   232 sec   (2282 perm/sec)   p_kst 1.500358e-01   p_cons 1.445283e-03   p_joint 1.445283e-03

Joint ci ratio: 1.399876e-01	ci left: 1.348481e-03	ci right 1.553224e-03	k: 782	n:540000
Cons ci ratio: 1.399876e-01	ci left: 1.348481e-03	ci right 1.553224e-03	k: 782	n:540000
KS ci ratio: 1.269178e-02	ci left: 1.491816e-01	ci right 1.510889e-01	k: 81072	n:540000
EPHA2   540000 perm   239 sec   (2260 perm/sec)   p_kst 1.501333e-01   p_cons 1.448148e-03   p_joint 1.448148e-03

Joint ci ratio: 1.380606e-01	ci left: 1.362573e-03	ci right 1.566373e-03	k: 804	n:550000
Cons ci ratio: 1.380606e-01	ci left: 1.362573e-03	ci right 1.566373e-03	k: 804	n:550000
KS ci ratio: 1.257895e-02	ci left: 1.491280e-01	ci right 1.510175e-01	k: 82539	n:550000
EPHA2   550000 perm   246 sec   (2239 perm/sec)   p_kst 1.500709e-01   p_cons 1.461818e-03   p_joint 1.461818e-03

Joint ci ratio: 1.362109e-01	ci left: 1.376180e-03	ci right 1.579034e-03	k: 826	n:560000
Cons ci ratio: 1.362109e-01	ci left: 1.376180e-03	ci right 1.579034e-03	k: 826	n:560000
KS ci ratio: 1.246524e-02	ci left: 1.491548e-01	ci right 1.510274e-01	k: 84050	n:560000
EPHA2   560000 perm   252 sec   (2218 perm/sec)   p_kst 1.500893e-01   p_cons 1.475000e-03   p_joint 1.475000e-03

Joint ci ratio: 1.349922e-01	ci left: 1.377459e-03	ci right 1.578539e-03	k: 841	n:570000
Cons ci ratio: 1.349922e-01	ci left: 1.377459e-03	ci right 1.578539e-03	k: 841	n:570000
KS ci ratio: 1.235957e-02	ci left: 1.490774e-01	ci right 1.509331e-01	k: 85502	n:570000
EPHA2   570000 perm   259 sec   (2198 perm/sec)   p_kst 1.500035e-01   p_cons 1.475439e-03   p_joint 1.475439e-03

Joint ci ratio: 1.340407e-01	ci left: 1.373703e-03	ci right 1.572709e-03	k: 853	n:580000
Cons ci ratio: 1.340407e-01	ci left: 1.373703e-03	ci right 1.572709e-03	k: 853	n:580000
KS ci ratio: 1.225372e-02	ci left: 1.490613e-01	ci right 1.509008e-01	k: 86988	n:580000
EPHA2   580000 perm   266 sec   (2178 perm/sec)   p_kst 1.499793e-01   p_cons 1.470690e-03   p_joint 1.470690e-03

Joint ci ratio: 1.330322e-01	ci left: 1.371718e-03	ci right 1.568823e-03	k: 866	n:590000
Cons ci ratio: 1.330322e-01	ci left: 1.371718e-03	ci right 1.568823e-03	k: 866	n:590000
KS ci ratio: 1.214837e-02	ci left: 1.490914e-01	ci right 1.509154e-01	k: 88501	n:590000
EPHA2   590000 perm   273 sec   (2158 perm/sec)   p_kst 1.500017e-01   p_cons 1.467797e-03   p_joint 1.467797e-03

Joint ci ratio: 1.316720e-01	ci left: 1.377863e-03	ci right 1.573668e-03	k: 884	n:600000
Cons ci ratio: 1.316720e-01	ci left: 1.377863e-03	ci right 1.573668e-03	k: 884	n:600000
KS ci ratio: 1.205214e-02	ci left: 1.489843e-01	ci right 1.507924e-01	k: 89932	n:600000
EPHA2   600000 perm   281 sec   (2139 perm/sec)   p_kst 1.498867e-01   p_cons 1.473333e-03   p_joint 1.473333e-03

Joint ci ratio: 1.302084e-01	ci left: 1.386988e-03	ci right 1.581730e-03	k: 904	n:610000
Cons ci ratio: 1.302084e-01	ci left: 1.386988e-03	ci right 1.581730e-03	k: 904	n:610000
KS ci ratio: 1.195132e-02	ci left: 1.490263e-01	ci right 1.508197e-01	k: 91452	n:610000
EPHA2   610000 perm   288 sec   (2120 perm/sec)   p_kst 1.499213e-01   p_cons 1.481967e-03   p_joint 1.481967e-03

Joint ci ratio: 1.288623e-01	ci left: 1.394270e-03	ci right 1.587855e-03	k: 923	n:620000
Cons ci ratio: 1.288623e-01	ci left: 1.394270e-03	ci right 1.587855e-03	k: 923	n:620000
KS ci ratio: 1.185472e-02	ci left: 1.490300e-01	ci right 1.508088e-01	k: 92949	n:620000
EPHA2   620000 perm   295 sec   (2101 perm/sec)   p_kst 1.499177e-01   p_cons 1.488710e-03   p_joint 1.488710e-03

Joint ci ratio: 1.277608e-01	ci left: 1.396720e-03	ci right 1.588863e-03	k: 939	n:630000
Cons ci ratio: 1.277608e-01	ci left: 1.396720e-03	ci right 1.588863e-03	k: 939	n:630000
KS ci ratio: 1.175895e-02	ci left: 1.490653e-01	ci right 1.508300e-01	k: 94466	n:630000
EPHA2   630000 perm   303 sec   (2082 perm/sec)   p_kst 1.499460e-01   p_cons 1.490476e-03   p_joint 1.490476e-03

Joint ci ratio: 1.267534e-01	ci left: 1.397588e-03	ci right 1.588220e-03	k: 954	n:640000
Cons ci ratio: 1.267534e-01	ci left: 1.397588e-03	ci right 1.588220e-03	k: 954	n:640000
KS ci ratio: 1.166654e-02	ci left: 1.490761e-01	ci right 1.508271e-01	k: 95968	n:640000
EPHA2   640000 perm   310 sec   (2064 perm/sec)   p_kst 1.499500e-01   p_cons 1.490625e-03   p_joint 1.490625e-03

Joint ci ratio: 1.254462e-01	ci left: 1.405886e-03	ci right 1.595525e-03	k: 974	n:650000
Cons ci ratio: 1.254462e-01	ci left: 1.405886e-03	ci right 1.595525e-03	k: 974	n:650000
KS ci ratio: 1.157446e-02	ci left: 1.491266e-01	ci right 1.508642e-01	k: 97496	n:650000
EPHA2   650000 perm   318 sec   (2046 perm/sec)   p_kst 1.499938e-01   p_cons 1.498462e-03   p_joint 1.498462e-03

Joint ci ratio: 1.246183e-01	ci left: 1.403665e-03	ci right 1.591663e-03	k: 987	n:660000
Cons ci ratio: 1.246183e-01	ci left: 1.403665e-03	ci right 1.591663e-03	k: 987	n:660000
KS ci ratio: 1.149430e-02	ci left: 1.489595e-01	ci right 1.506830e-01	k: 98881	n:660000
EPHA2   660000 perm   326 sec   (2027 perm/sec)   p_kst 1.498197e-01   p_cons 1.495455e-03   p_joint 1.495455e-03

Joint ci ratio: 1.237448e-01	ci left: 1.402961e-03	ci right 1.589451e-03	k: 1001	n:670000
Cons ci ratio: 1.237448e-01	ci left: 1.402961e-03	ci right 1.589451e-03	k: 1001	n:670000
KS ci ratio: 1.140961e-02	ci left: 1.489343e-01	ci right 1.506448e-01	k: 100358	n:670000
EPHA2   670000 perm   334 sec   (2007 perm/sec)   p_kst 1.497881e-01   p_cons 1.494030e-03   p_joint 1.494030e-03

Joint ci ratio: 1.221094e-01	ci left: 1.420815e-03	ci right 1.607002e-03	k: 1028	n:680000
Cons ci ratio: 1.221094e-01	ci left: 1.420815e-03	ci right 1.607002e-03	k: 1028	n:680000
KS ci ratio: 1.132141e-02	ci left: 1.490303e-01	ci right 1.507286e-01	k: 101917	n:680000
EPHA2   680000 perm   342 sec   (1990 perm/sec)   p_kst 1.498779e-01   p_cons 1.511765e-03   p_joint 1.511765e-03

Joint ci ratio: 1.213455e-01	ci left: 1.418491e-03	ci right 1.603126e-03	k: 1041	n:690000
Cons ci ratio: 1.213455e-01	ci left: 1.418491e-03	ci right 1.603126e-03	k: 1041	n:690000
KS ci ratio: 1.124072e-02	ci left: 1.489992e-01	ci right 1.506849e-01	k: 103390	n:690000
EPHA2   690000 perm   350 sec   (1973 perm/sec)   p_kst 1.498406e-01   p_cons 1.508696e-03   p_joint 1.508696e-03

Joint ci ratio: 1.201404e-01	ci left: 1.427321e-03	ci right 1.611130e-03	k: 1062	n:700000
Cons ci ratio: 1.201404e-01	ci left: 1.427321e-03	ci right 1.611130e-03	k: 1062	n:700000
KS ci ratio: 1.116324e-02	ci left: 1.489348e-01	ci right 1.506081e-01	k: 104839	n:700000
EPHA2   700000 perm   358 sec   (1955 perm/sec)   p_kst 1.497700e-01   p_cons 1.517143e-03   p_joint 1.517143e-03

Joint ci ratio: 1.189705e-01	ci left: 1.435911e-03	ci right 1.618899e-03	k: 1083	n:710000
Cons ci ratio: 1.189705e-01	ci left: 1.435911e-03	ci right 1.618899e-03	k: 1083	n:710000
KS ci ratio: 1.108543e-02	ci left: 1.489158e-01	ci right 1.505772e-01	k: 106319	n:710000
EPHA2   710000 perm   366 sec   (1938 perm/sec)   p_kst 1.497451e-01   p_cons 1.525352e-03   p_joint 1.525352e-03

Joint ci ratio: 1.177808e-01	ci left: 1.445619e-03	ci right 1.627874e-03	k: 1105	n:720000
Cons ci ratio: 1.177808e-01	ci left: 1.445619e-03	ci right 1.627874e-03	k: 1105	n:720000
KS ci ratio: 1.101037e-02	ci left: 1.488711e-01	ci right 1.505206e-01	k: 107780	n:720000
EPHA2   720000 perm   375 sec   (1920 perm/sec)   p_kst 1.496944e-01   p_cons 1.534722e-03   p_joint 1.534722e-03

Joint ci ratio: 1.166778e-01	ci left: 1.453740e-03	ci right 1.635184e-03	k: 1126	n:730000
Cons ci ratio: 1.166778e-01	ci left: 1.453740e-03	ci right 1.635184e-03	k: 1126	n:730000
KS ci ratio: 1.093252e-02	ci left: 1.489274e-01	ci right 1.505658e-01	k: 109314	n:730000
EPHA2   730000 perm   383 sec   (1904 perm/sec)   p_kst 1.497452e-01   p_cons 1.542466e-03   p_joint 1.542466e-03

Joint ci ratio: 1.159599e-01	ci left: 1.452463e-03	ci right 1.632556e-03	k: 1140	n:740000
Cons ci ratio: 1.159599e-01	ci left: 1.452463e-03	ci right 1.632556e-03	k: 1140	n:740000
KS ci ratio: 1.085745e-02	ci left: 1.489552e-01	ci right 1.505827e-01	k: 110828	n:740000
EPHA2   740000 perm   392 sec   (1888 perm/sec)   p_kst 1.497676e-01   p_cons 1.540541e-03   p_joint 1.540541e-03

Joint ci ratio: 1.152551e-01	ci left: 1.451224e-03	ci right 1.629995e-03	k: 1154	n:750000
Cons ci ratio: 1.152551e-01	ci left: 1.451224e-03	ci right 1.629995e-03	k: 1154	n:750000
KS ci ratio: 1.078797e-02	ci left: 1.488866e-01	ci right 1.505028e-01	k: 112270	n:750000
EPHA2   750000 perm   401 sec   (1872 perm/sec)   p_kst 1.496933e-01   p_cons 1.538667e-03   p_joint 1.538667e-03

Joint ci ratio: 1.147105e-01	ci left: 1.446186e-03	ci right 1.623438e-03	k: 1165	n:760000
Cons ci ratio: 1.147105e-01	ci left: 1.446186e-03	ci right 1.623438e-03	k: 1165	n:760000
KS ci ratio: 1.071459e-02	ci left: 1.489432e-01	ci right 1.505489e-01	k: 113806	n:760000
EPHA2   760000 perm   409 sec   (1858 perm/sec)   p_kst 1.497447e-01   p_cons 1.532895e-03   p_joint 1.532895e-03

Joint ci ratio: 1.140765e-01	ci left: 1.443804e-03	ci right 1.619720e-03	k: 1178	n:770000
Cons ci ratio: 1.140765e-01	ci left: 1.443804e-03	ci right 1.619720e-03	k: 1178	n:770000
KS ci ratio: 1.064281e-02	ci left: 1.489958e-01	ci right 1.505913e-01	k: 115340	n:770000
EPHA2   770000 perm   418 sec   (1843 perm/sec)   p_kst 1.497922e-01   p_cons 1.529870e-03   p_joint 1.529870e-03

Joint ci ratio: 1.131680e-01	ci left: 1.448961e-03	ci right 1.624005e-03	k: 1197	n:780000
Cons ci ratio: 1.131680e-01	ci left: 1.448961e-03	ci right 1.624005e-03	k: 1197	n:780000
KS ci ratio: 1.057356e-02	ci left: 1.490202e-01	ci right 1.506055e-01	k: 116853	n:780000
EPHA2   780000 perm   427 sec   (1829 perm/sec)   p_kst 1.498115e-01   p_cons 1.534615e-03   p_joint 1.534615e-03

Joint ci ratio: 1.125591e-01	ci left: 1.446611e-03	ci right 1.620368e-03	k: 1210	n:790000
Cons ci ratio: 1.125591e-01	ci left: 1.446611e-03	ci right 1.620368e-03	k: 1210	n:790000
KS ci ratio: 1.050497e-02	ci left: 1.490604e-01	ci right 1.506358e-01	k: 118379	n:790000
EPHA2   790000 perm   435 sec   (1815 perm/sec)   p_kst 1.498468e-01   p_cons 1.531646e-03   p_joint 1.531646e-03

Joint ci ratio: 1.118684e-01	ci left: 1.446752e-03	ci right 1.619390e-03	k: 1225	n:800000
Cons ci ratio: 1.118684e-01	ci left: 1.446752e-03	ci right 1.619390e-03	k: 1225	n:800000
KS ci ratio: 1.044047e-02	ci left: 1.490323e-01	ci right 1.505977e-01	k: 119851	n:800000
EPHA2   800000 perm   444 sec   (1801 perm/sec)   p_kst 1.498137e-01   p_cons 1.531250e-03   p_joint 1.531250e-03

Joint ci ratio: 1.115057e-01	ci left: 1.438491e-03	ci right 1.609550e-03	k: 1233	n:810000
Cons ci ratio: 1.115057e-01	ci left: 1.438491e-03	ci right 1.609550e-03	k: 1233	n:810000
KS ci ratio: 1.037920e-02	ci left: 1.489545e-01	ci right 1.505098e-01	k: 121282	n:810000
EPHA2   810000 perm   453 sec   (1788 perm/sec)   p_kst 1.497309e-01   p_cons 1.522222e-03   p_joint 1.522222e-03

Joint ci ratio: 1.109231e-01	ci left: 1.436361e-03	ci right 1.606216e-03	k: 1246	n:820000
Cons ci ratio: 1.109231e-01	ci left: 1.436361e-03	ci right 1.606216e-03	k: 1246	n:820000
KS ci ratio: 1.031662e-02	ci left: 1.489369e-01	ci right 1.504826e-01	k: 122761	n:820000
EPHA2   820000 perm   462 sec   (1774 perm/sec)   p_kst 1.497085e-01   p_cons 1.519512e-03   p_joint 1.519512e-03

Joint ci ratio: 1.100874e-01	ci left: 1.441315e-03	ci right 1.610388e-03	k: 1265	n:830000
Cons ci ratio: 1.100874e-01	ci left: 1.441315e-03	ci right 1.610388e-03	k: 1265	n:830000
KS ci ratio: 1.025492e-02	ci left: 1.489259e-01	ci right 1.504621e-01	k: 124245	n:830000
EPHA2   830000 perm   471 sec   (1760 perm/sec)   p_kst 1.496928e-01   p_cons 1.524096e-03   p_joint 1.524096e-03

Joint ci ratio: 1.091427e-01	ci left: 1.449629e-03	ci right 1.618124e-03	k: 1287	n:840000
Cons ci ratio: 1.091427e-01	ci left: 1.449629e-03	ci right 1.618124e-03	k: 1287	n:840000
KS ci ratio: 1.019441e-02	ci left: 1.489127e-01	ci right 1.504397e-01	k: 125727	n:840000
EPHA2   840000 perm   481 sec   (1747 perm/sec)   p_kst 1.496750e-01   p_cons 1.532143e-03   p_joint 1.532143e-03

Joint ci ratio: 1.084294e-01	ci left: 1.452030e-03	ci right 1.619631e-03	k: 1304	n:850000
Cons ci ratio: 1.084294e-01	ci left: 1.452030e-03	ci right 1.619631e-03	k: 1304	n:850000
KS ci ratio: 1.013439e-02	ci left: 1.489140e-01	ci right 1.504320e-01	k: 127221	n:850000
EPHA2   850000 perm   490 sec   (1735 perm/sec)   p_kst 1.496718e-01   p_cons 1.534118e-03   p_joint 1.534118e-03

Joint ci ratio: 1.075264e-01	ci left: 1.460037e-03	ci right 1.627070e-03	k: 1326	n:860000
Cons ci ratio: 1.075264e-01	ci left: 1.460037e-03	ci right 1.627070e-03	k: 1326	n:860000
KS ci ratio: 1.007902e-02	ci left: 1.488247e-01	ci right 1.503335e-01	k: 128637	n:860000
EPHA2   860000 perm   499 sec   (1722 perm/sec)   p_kst 1.495779e-01   p_cons 1.541860e-03   p_joint 1.541860e-03

Joint ci ratio: 1.068441e-01	ci left: 1.462271e-03	ci right 1.628432e-03	k: 1343	n:870000
Cons ci ratio: 1.068441e-01	ci left: 1.462271e-03	ci right 1.628432e-03	k: 1343	n:870000
KS ci ratio: 1.001897e-02	ci left: 1.488786e-01	ci right 1.503789e-01	k: 130176	n:870000
EPHA2   870000 perm   509 sec   (1710 perm/sec)   p_kst 1.496276e-01   p_cons 1.543678e-03   p_joint 1.543678e-03

Joint ci ratio: 1.059798e-01	ci left: 1.469990e-03	ci right 1.635592e-03	k: 1365	n:880000
Cons ci ratio: 1.059798e-01	ci left: 1.469990e-03	ci right 1.635592e-03	k: 1365	n:880000
KS ci ratio: 9.960337e-03	ci left: 1.489223e-01	ci right 1.504141e-01	k: 131707	n:880000
EPHA2   880000 perm   518 sec   (1697 perm/sec)   p_kst 1.496670e-01   p_cons 1.551136e-03   p_joint 1.551136e-03

Joint ci ratio: 1.054027e-01	ci left: 1.469881e-03	ci right 1.634514e-03	k: 1380	n:890000
Cons ci ratio: 1.054027e-01	ci left: 1.469881e-03	ci right 1.634514e-03	k: 1380	n:890000
KS ci ratio: 9.903596e-03	ci left: 1.489425e-01	ci right 1.504260e-01	k: 133218	n:890000
EPHA2   890000 perm   528 sec   (1686 perm/sec)   p_kst 1.496831e-01   p_cons 1.550562e-03   p_joint 1.550562e-03

Joint ci ratio: 1.051750e-01	ci left: 1.460040e-03	ci right 1.623195e-03	k: 1386	n:900000
Cons ci ratio: 1.051750e-01	ci left: 1.460040e-03	ci right 1.623195e-03	k: 1386	n:900000
KS ci ratio: 9.847685e-03	ci left: 1.489657e-01	ci right 1.504410e-01	k: 134732	n:900000
EPHA2   900000 perm   538 sec   (1673 perm/sec)   p_kst 1.497022e-01   p_cons 1.540000e-03   p_joint 1.540000e-03

Joint ci ratio: 1.045736e-01	ci left: 1.461117e-03	ci right 1.623401e-03	k: 1402	n:910000
Cons ci ratio: 1.045736e-01	ci left: 1.461117e-03	ci right 1.623401e-03	k: 1402	n:910000
KS ci ratio: 9.794190e-03	ci left: 1.489500e-01	ci right 1.504171e-01	k: 136211	n:910000
EPHA2   910000 perm   548 sec   (1662 perm/sec)   p_kst 1.496824e-01   p_cons 1.540659e-03   p_joint 1.540659e-03

Joint ci ratio: 1.040190e-01	ci left: 1.461114e-03	ci right 1.622485e-03	k: 1417	n:920000
Cons ci ratio: 1.040190e-01	ci left: 1.461114e-03	ci right 1.622485e-03	k: 1417	n:920000
KS ci ratio: 9.741724e-03	ci left: 1.489303e-01	ci right 1.503893e-01	k: 137686	n:920000
EPHA2   920000 perm   557 sec   (1650 perm/sec)   p_kst 1.496587e-01   p_cons 1.540217e-03   p_joint 1.540217e-03

Joint ci ratio: 1.035094e-01	ci left: 1.460066e-03	ci right 1.620483e-03	k: 1431	n:930000
Cons ci ratio: 1.035094e-01	ci left: 1.460066e-03	ci right 1.620483e-03	k: 1431	n:930000
KS ci ratio: 9.687963e-03	ci left: 1.489669e-01	ci right 1.504181e-01	k: 139213	n:930000
EPHA2   930000 perm   567 sec   (1639 perm/sec)   p_kst 1.496914e-01   p_cons 1.538710e-03   p_joint 1.538710e-03

Joint ci ratio: 1.027583e-01	ci left: 1.466298e-03	ci right 1.626160e-03	k: 1452	n:940000
Cons ci ratio: 1.027583e-01	ci left: 1.466298e-03	ci right 1.626160e-03	k: 1452	n:940000
KS ci ratio: 9.636613e-03	ci left: 1.489623e-01	ci right 1.504058e-01	k: 140702	n:940000
EPHA2   940000 perm   577 sec   (1628 perm/sec)   p_kst 1.496830e-01   p_cons 1.544681e-03   p_joint 1.544681e-03

Joint ci ratio: 1.021276e-01	ci left: 1.469326e-03	ci right 1.628475e-03	k: 1470	n:950000
Cons ci ratio: 1.021276e-01	ci left: 1.469326e-03	ci right 1.628475e-03	k: 1470	n:950000
KS ci ratio: 9.582861e-03	ci left: 1.490430e-01	ci right 1.504791e-01	k: 142272	n:950000
EPHA2   950000 perm   588 sec   (1617 perm/sec)   p_kst 1.497600e-01   p_cons 1.547368e-03   p_joint 1.547368e-03

Joint ci ratio: 1.014401e-01	ci left: 1.474323e-03	ci right 1.632875e-03	k: 1490	n:960000
Cons ci ratio: 1.014401e-01	ci left: 1.474323e-03	ci right 1.632875e-03	k: 1490	n:960000
KS ci ratio: 9.533935e-03	ci left: 1.490170e-01	ci right 1.504455e-01	k: 143741	n:960000
EPHA2   960000 perm   598 sec   (1606 perm/sec)   p_kst 1.497302e-01   p_cons 1.552083e-03   p_joint 1.552083e-03

Joint ci ratio: 1.010345e-01	ci left: 1.471182e-03	ci right 1.628726e-03	k: 1502	n:970000
Cons ci ratio: 1.010345e-01	ci left: 1.471182e-03	ci right 1.628726e-03	k: 1502	n:970000
KS ci ratio: 9.483217e-03	ci left: 1.490595e-01	ci right 1.504808e-01	k: 145276	n:970000
EPHA2   970000 perm   608 sec   (1595 perm/sec)   p_kst 1.497691e-01   p_cons 1.548454e-03   p_joint 1.548454e-03

Joint ci ratio: 1.003687e-01	ci left: 1.476064e-03	ci right 1.633028e-03	k: 1522	n:980000
Cons ci ratio: 1.003687e-01	ci left: 1.476064e-03	ci right 1.633028e-03	k: 1522	n:980000
KS ci ratio: 9.433904e-03	ci left: 1.490848e-01	ci right 1.504989e-01	k: 146795	n:980000
EPHA2   980000 perm   619 sec   (1584 perm/sec)   p_kst 1.497908e-01   p_cons 1.553061e-03   p_joint 1.553061e-03

Joint ci ratio: 9.965118e-02	ci left: 1.482821e-03	ci right 1.639310e-03	k: 1544	n:990000
Cons ci ratio: 9.965118e-02	ci left: 1.482821e-03	ci right 1.639310e-03	k: 1544	n:990000
KS ci ratio: 9.386879e-03	ci left: 1.490683e-01	ci right 1.504752e-01	k: 148273	n:990000
EPHA2   990000 perm   630 sec   (1572 perm/sec)   p_kst 1.497707e-01   p_cons 1.559596e-03   p_joint 1.559596e-03

Outputting figure to mutsig2_images.part000000000057/EPHA2.2_2999_990000_0.14977_0.0015596_0.0015596.png
                gene_name: EPHA2
               theta_stop: 0.100 
                    nperm: 990000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.0016 
      ci_cons_bounds_left: 0.0015 
     ci_cons_bounds_right: 0.0016 
                  p_joint: 0.0016 
     ci_joint_bounds_left: 0.0015 
    ci_joint_bounds_right: 0.0016 

Current progress: 88 percent done.
EPHX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.878641e-03	ci left: 9.882892e-01	ci right 9.922172e-01	k: 9904	n:10000
Cons ci ratio: 4.725902e-02	ci left: 3.978474e-01	ci right 4.172065e-01	k: 4075	n:10000
KS ci ratio: 3.088809e-02	ci left: 6.072889e-01	ci right 6.264430e-01	k: 6169	n:10000
EPHX2   10000 perm   2 sec   (5889 perm/sec)   p_kst 6.169000e-01   p_cons 4.075000e-01   p_joint 9.904000e-01

Outputting figure to mutsig2_images.part000000000057/EPHX2.2_1744_10000_0.6169_0.4075_0.9904.png
                gene_name: EPHX2
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 89 percent done.
EPHX4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.293953e-02	ci left: 8.957999e-01	ci right 9.075649e-01	k: 9018	n:10000
Cons ci ratio: 5.282739e-02	ci left: 3.456147e-01	ci right 3.644699e-01	k: 3550	n:10000
KS ci ratio: 1.920806e-02	ci left: 7.985170e-01	ci right 8.141041e-01	k: 8064	n:10000
EPHX4   10000 perm   1 sec   (6981 perm/sec)   p_kst 8.064000e-01   p_cons 3.550000e-01   p_joint 9.018000e-01

Outputting figure to mutsig2_images.part000000000057/EPHX4.2_1117_10000_0.8064_0.355_0.9018.png
                gene_name: EPHX4
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 91 percent done.
EPM2AIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.504455e-02	ci left: 3.271384e-01	ci right 3.457570e-01	k: 3364	n:10000
KS ci ratio: 3.270107e-02	ci left: 5.798839e-01	ci right 5.992639e-01	k: 5896	n:10000
EPM2AIP1   10000 perm   2 sec   (6133 perm/sec)   p_kst 5.896000e-01   p_cons 3.364000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000057/EPM2AIP1.2_1828_10000_0.5896_0.3364_1.png
                gene_name: EPM2AIP1
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
EPOR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.049091e-02	ci left: 6.134166e-01	ci right 6.325117e-01	k: 6230	n:10000
Cons ci ratio: 5.476226e-02	ci left: 3.294222e-01	ci right 3.480718e-01	k: 3387	n:10000
KS ci ratio: 5.395331e-02	ci left: 3.360765e-01	ci right 3.548136e-01	k: 3454	n:10000
EPOR   10000 perm   2 sec   (5573 perm/sec)   p_kst 3.454000e-01   p_cons 3.387000e-01   p_joint 6.230000e-01

Outputting figure to mutsig2_images.part000000000057/EPOR.2_1559_10000_0.3454_0.3387_0.623.png
                gene_name: EPOR
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 95 percent done.
EPS15L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.383922e-02	ci left: 7.211824e-01	ci right 7.386835e-01	k: 7300	n:10000
Cons ci ratio: 6.698429e-02	ci left: 2.464796e-01	ci right 2.636633e-01	k: 2550	n:10000
KS ci ratio: 3.010923e-02	ci left: 6.193450e-01	ci right 6.383799e-01	k: 6289	n:10000
EPS15L1   10000 perm   2 sec   (5623 perm/sec)   p_kst 6.289000e-01   p_cons 2.550000e-01   p_joint 7.300000e-01

Outputting figure to mutsig2_images.part000000000057/EPS15L1.2_2687_10000_0.6289_0.255_0.73.png
                gene_name: EPS15L1
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 96 percent done.
ERAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.363528e-02	ci left: 5.661428e-01	ci right 5.856130e-01	k: 5759	n:10000
KS ci ratio: 2.452937e-02	ci left: 7.096736e-01	ci right 7.273989e-01	k: 7186	n:10000
ERAP2   10000 perm   2 sec   (5561 perm/sec)   p_kst 7.186000e-01   p_cons 5.759000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000057/ERAP2.2_2955_10000_0.7186_0.5759_1.png
                gene_name: ERAP2
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
ERBB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.538873e-02	ci left: 5.410874e-01	ci right 5.606829e-01	k: 5509	n:10000
KS ci ratio: 1.208232e-02	ci left: 9.076136e-01	ci right 9.187443e-01	k: 9133	n:10000
ERBB2   10000 perm   2 sec   (5016 perm/sec)   p_kst 9.133000e-01   p_cons 5.509000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000057/ERBB2.2_3876_10000_0.9133_0.5509_1.png
                gene_name: ERBB2
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000057
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 57 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1643>
Subject: Job 8004053: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1643>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000058> was used as the working directory.
Started at Sun Nov 11 15:05:37 2012
Results reported at Sun Nov 11 15:20:07 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000058.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000058.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 58  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000058.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    919.14 sec.
    Max Memory :      4662 MB
    Max Swap   :      7029 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
58
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 58
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 58: processing genes 5158 - 5247
Calculating significance of each gene.
Using projection method.
5158	ERC1	5.081727e-01
5159	ERC2	8.812410e-01
5160	ERCC1	7.214634e-01
5161	ERCC2	1
5162	ERCC3	9.132723e-01
5163	ERCC4	8.157293e-01
5164	ERCC5	9.219293e-01
5165	ERCC6	9.063805e-01
5166	ERCC6L	8.209605e-01
5167	ERCC8	2.563733e-01
5168	EREG	4.208529e-01
5169	ERF	1
5170	ERG	8.352259e-01
5171	ERGIC1	1
5172	ERGIC2	5.624841e-01
5173	ERGIC3	1
5174	ERH	1
5175	ERI1	1.075279e-01
5176	ERI2	3.574448e-01
5177	ERI3	6.084608e-01
5178	ERICH1	3.018567e-01
5179	ERLEC1	1.222597e-01
5180	ERLIN1	7.107751e-01
5181	ERLIN2	5.543061e-01
5182	ERMAP	8.966024e-01
5183	ERMN	1
5184	ERMP1	8.456976e-01
5185	ERN1	9.220410e-01
5186	ERN2	3.412539e-01
5187	ERO1L	7.478240e-01
5188	ERO1LB	4.575524e-01
5189	ERP27	1
5190	ERP29	1
5191	ERP44	1
5192	ERRFI1	8.664869e-01
5193	ERV3	1
5194	ERVFRDE1	5.819012e-01
5195	ESAM	7.751568e-02
5196	ESCO1	7.629756e-01
5197	ESCO2	1
5198	ESD	1
5199	ESF1	3.905363e-01
5200	ESM1	2.448927e-01
5201	ESPL1	9.998284e-01
5202	ESPN	8.667126e-01
5203	ESPNL	6.847166e-01
5204	ESR1	2.032094e-01
5205	ESR2	7.238874e-01
5206	ESRP1	6.439667e-01
5207	ESRP2	9.338530e-01
5208	ESRRA	1
5209	ESRRB	6.147467e-01
5210	ESRRG	9.815674e-07
5211	ESX1	3.754204e-01
5212	ESYT1	9.946764e-01
5213	ESYT2	9.539122e-01
5214	ESYT3	9.412201e-01
5215	ETAA1	7.672741e-01
5216	ETF1	3.651525e-01
5217	ETFA	1.144014e-01
5218	ETFB	7.331233e-01
5219	ETFDH	6.859237e-01
5220	ETHE1	1
5221	ETNK1	3.936316e-01
5222	ETNK2	1
5223	ETS1	1
5224	ETS2	1
5225	ETV1	1
5226	ETV2	1
5227	ETV3	5.359708e-02
5228	ETV3L	1.507006e-01
5229	ETV4	1
5230	ETV5	8.938928e-01
5231	ETV6	1.379222e-01
5232	ETV7	1
5233	EVC	8.625618e-01
5234	EVC2	4.937403e-01
5235	EVI2A	6.432470e-01
5236	EVI2B	7.260548e-01
5237	EVI5	9.246908e-01
5238	EVI5L	2.592270e-01
5239	EVL	6.339376e-01
5240	EVPL	9.323712e-01
5241	EVPLL	1
5242	EVX1	3.948886e-02
5243	EVX2	1
5244	EWSR1	8.875119e-01
5245	EXD1	8.909731e-01
5246	EXD2	2.952310e-01
5247	EXD3	1
Done

Running MutSig 2:
Scatter job 58: processing genes 5158 - 5247
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ESRRG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.028186e-01	ci left: 1.203376e-01	ci right 1.334806e-01	k: 1268	n:10000
Cons ci ratio: 3.904550e-02	ci left: 4.920509e-01	ci right 5.117480e-01	k: 5019	n:10000
KS ci ratio: 1.323893e-01	ci left: 7.524035e-02	ci right 8.600545e-02	k: 805	n:10000
ESRRG   10000 perm   2 sec   (4739 perm/sec)   p_kst 8.050000e-02   p_cons 5.019000e-01   p_joint 1.268000e-01

Joint ci ratio: 7.336872e-02	ci left: 1.202987e-01	ci right 1.295107e-01	k: 2497	n:20000
Cons ci ratio: 2.750943e-02	ci left: 4.967956e-01	ci right 5.107034e-01	k: 10075	n:20000
KS ci ratio: 9.298930e-02	ci left: 7.779311e-02	ci right 8.542905e-02	k: 1631	n:20000
ESRRG   20000 perm   6 sec   (3092 perm/sec)   p_kst 8.155000e-02   p_cons 5.037500e-01   p_joint 1.248500e-01

Outputting figure to mutsig2_images.part000000000058/ESRRG.12_1405_20000_0.08155_0.50375_0.12485.png
                gene_name: ESRRG
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.082 
        ci_ks_bounds_left: 0.078 
       ci_ks_bounds_right: 0.085 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 2 percent done.
EVC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.136535e-02	ci left: 2.808214e-01	ci right 2.987012e-01	k: 2897	n:10000
Cons ci ratio: 9.408775e-02	ci left: 1.408974e-01	ci right 1.549084e-01	k: 1478	n:10000
KS ci ratio: 3.864930e-02	ci left: 4.971503e-01	ci right 5.168456e-01	k: 5070	n:10000
EVC2   10000 perm   2 sec   (4444 perm/sec)   p_kst 5.070000e-01   p_cons 1.478000e-01   p_joint 2.897000e-01

Outputting figure to mutsig2_images.part000000000058/EVC2.12_4015_10000_0.507_0.1478_0.2897.png
                gene_name: EVC2
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 4 percent done.
ERCC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.686446e-02	ci left: 6.711587e-01	ci right 6.895361e-01	k: 6804	n:10000
Cons ci ratio: 2.559385e-02	ci left: 6.920201e-01	ci right 7.100626e-01	k: 7011	n:10000
KS ci ratio: 3.576213e-02	ci left: 5.358791e-01	ci right 5.554943e-01	k: 5457	n:10000
ERCC5   10000 perm   2 sec   (5118 perm/sec)   p_kst 5.457000e-01   p_cons 7.011000e-01   p_joint 6.804000e-01

Outputting figure to mutsig2_images.part000000000058/ERCC5.6_3621_10000_0.5457_0.7011_0.6804.png
                gene_name: ERCC5
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 7 percent done.
ESR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.911097e-02	ci left: 6.350273e-01	ci right 6.538884e-01	k: 6445	n:10000
Cons ci ratio: 1.779874e-02	ci left: 8.215767e-01	ci right 8.364311e-01	k: 8291	n:10000
KS ci ratio: 3.808135e-02	ci left: 5.045512e-01	ci right 5.242404e-01	k: 5144	n:10000
ESR1   10000 perm   2 sec   (5442 perm/sec)   p_kst 5.144000e-01   p_cons 8.291000e-01   p_joint 6.445000e-01

Outputting figure to mutsig2_images.part000000000058/ESR1.6_1820_10000_0.5144_0.8291_0.6445.png
                gene_name: ESR1
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.65 

Current progress: 9 percent done.
EVI5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.165041e-02	ci left: 9.133766e-01	ci right 9.241779e-01	k: 9189	n:10000
KS ci ratio: 9.103802e-03	ci left: 9.444016e-01	ci right 9.531346e-01	k: 9489	n:10000
EVI5   10000 perm   3 sec   (3474 perm/sec)   p_kst 9.489000e-01   p_cons 9.189000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000058/EVI5.6_2505_10000_0.9489_0.9189_1.png
                gene_name: EVI5
               theta_stop: 0.012 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 11 percent done.
ERC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.756368e-02	ci left: 3.947600e-01	ci right 4.140957e-01	k: 4044	n:10000
Cons ci ratio: 9.412510e-02	ci left: 1.407993e-01	ci right 1.548065e-01	k: 1477	n:10000
KS ci ratio: 1.314294e-02	ci left: 8.929274e-01	ci right 9.048391e-01	k: 8990	n:10000
ERC1   10000 perm   3 sec   (3770 perm/sec)   p_kst 8.990000e-01   p_cons 1.477000e-01   p_joint 4.044000e-01

Outputting figure to mutsig2_images.part000000000058/ERC1.5_3423_10000_0.899_0.1477_0.4044.png
                gene_name: ERC1
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 13 percent done.
ERN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.416165e-02	ci left: 8.781755e-01	ci right 8.907995e-01	k: 8846	n:10000
KS ci ratio: 1.426541e-02	ci left: 8.766408e-01	ci right 8.893352e-01	k: 8831	n:10000
ERN2   10000 perm   2 sec   (5263 perm/sec)   p_kst 8.831000e-01   p_cons 8.846000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000058/ERN2.5_3013_10000_0.8831_0.8846_1.png
                gene_name: ERN2
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 16 percent done.
ESPL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.691824e-02	ci left: 4.013338e-01	ci right 4.207181e-01	k: 4110	n:10000
Cons ci ratio: 1.811177e-02	ci left: 8.164937e-01	ci right 8.315171e-01	k: 8241	n:10000
KS ci ratio: 7.096209e-02	ci left: 2.254342e-01	ci right 2.421211e-01	k: 2337	n:10000
ESPL1   10000 perm   2 sec   (4509 perm/sec)   p_kst 2.337000e-01   p_cons 8.241000e-01   p_joint 4.110000e-01

Outputting figure to mutsig2_images.part000000000058/ESPL1.5_6483_10000_0.2337_0.8241_0.411.png
                gene_name: ESPL1
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 18 percent done.
EVPL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.522995e-02	ci left: 3.256490e-01	ci right 3.442472e-01	k: 3349	n:10000
Cons ci ratio: 7.724826e-03	ci left: 9.587987e-01	ci right 9.663288e-01	k: 9627	n:10000
KS ci ratio: 8.257621e-02	ci left: 1.762516e-01	ci right 1.915330e-01	k: 1838	n:10000
EVPL   10000 perm   3 sec   (3918 perm/sec)   p_kst 1.838000e-01   p_cons 9.627000e-01   p_joint 3.349000e-01

Outputting figure to mutsig2_images.part000000000058/EVPL.5_6190_10000_0.1838_0.9627_0.3349.png
                gene_name: EVPL
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 20 percent done.
ERLEC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.260673e-03	ci left: 9.796277e-01	ci right 9.848860e-01	k: 9824	n:10000
Cons ci ratio: 3.959588e-02	ci left: 4.850534e-01	ci right 5.047496e-01	k: 4949	n:10000
KS ci ratio: 1.711004e-02	ci left: 8.326658e-01	ci right 8.471356e-01	k: 8400	n:10000
ERLEC1   10000 perm   3 sec   (3626 perm/sec)   p_kst 8.400000e-01   p_cons 4.949000e-01   p_joint 9.824000e-01

Outputting figure to mutsig2_images.part000000000058/ERLEC1.4_1508_10000_0.84_0.4949_0.9824.png
                gene_name: ERLEC1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 22 percent done.
ESAM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.111722e-02	ci left: 6.037736e-01	ci right 6.229603e-01	k: 6134	n:10000
Cons ci ratio: 4.442278e-02	ci left: 4.279459e-01	ci right 4.474904e-01	k: 4377	n:10000
KS ci ratio: 5.075896e-02	ci left: 3.640070e-01	ci right 3.830667e-01	k: 3735	n:10000
ESAM   10000 perm   2 sec   (4601 perm/sec)   p_kst 3.735000e-01   p_cons 4.377000e-01   p_joint 6.134000e-01

Outputting figure to mutsig2_images.part000000000058/ESAM.4_1201_10000_0.3735_0.4377_0.6134.png
                gene_name: ESAM
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 24 percent done.
ESF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.118833e-02	ci left: 7.655723e-01	ci right 7.820679e-01	k: 7739	n:10000
KS ci ratio: 2.154515e-02	ci left: 7.595994e-01	ci right 7.762442e-01	k: 7680	n:10000
ESF1   10000 perm   2 sec   (4489 perm/sec)   p_kst 7.680000e-01   p_cons 7.739000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000058/ESF1.4_2608_10000_0.768_0.7739_1.png
                gene_name: ESF1
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 27 percent done.
ESRRB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.872968e-02	ci left: 2.990576e-01	ci right 3.172542e-01	k: 3081	n:10000
Cons ci ratio: 1.365803e-01	ci left: 7.088017e-02	ci right 8.136835e-02	k: 760	n:10000
KS ci ratio: 3.981027e-02	ci left: 4.823548e-01	ci right 5.020497e-01	k: 4922	n:10000
ESRRB   10000 perm   2 sec   (5964 perm/sec)   p_kst 4.922000e-01   p_cons 7.600000e-02   p_joint 3.081000e-01

Joint ci ratio: 1.887232e-02	ci left: 6.767514e-01	ci right 6.896953e-01	k: 13665	n:20000
Cons ci ratio: 9.627114e-02	ci left: 7.285307e-02	ci right 8.027059e-02	k: 1530	n:20000
KS ci ratio: 2.792794e-02	ci left: 4.892467e-01	ci right 5.031544e-01	k: 9924	n:20000
ESRRB   20000 perm   4 sec   (5385 perm/sec)   p_kst 4.962000e-01   p_cons 7.650000e-02   p_joint 6.832500e-01

Outputting figure to mutsig2_images.part000000000058/ESRRB.4_1559_20000_0.4962_0.0765_0.68325.png
                gene_name: ESRRB
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.076 
      ci_cons_bounds_left: 0.073 
     ci_cons_bounds_right: 0.080 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.69 

Current progress: 29 percent done.
ETV1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.750894e-01	ci left: 1.716007e-02	ci right 2.272454e-02	k: 198	n:10000
Cons ci ratio: 6.312521e-02	ci left: 2.694328e-01	ci right 2.870966e-01	k: 2782	n:10000
KS ci ratio: 3.035655e-01	ci left: 1.390981e-02	ci right 1.897755e-02	k: 163	n:10000
ETV1   10000 perm   2 sec   (5311 perm/sec)   p_kst 1.630000e-02   p_cons 2.782000e-01   p_joint 1.980000e-02

Joint ci ratio: 2.231068e-01	ci left: 1.350289e-02	ci right 1.694016e-02	k: 303	n:20000
Cons ci ratio: 4.508521e-02	ci left: 2.680752e-01	ci right 2.804905e-01	k: 5485	n:20000
KS ci ratio: 2.130137e-01	ci left: 1.487481e-02	ci right 1.846769e-02	k: 332	n:20000
ETV1   20000 perm   4 sec   (4900 perm/sec)   p_kst 1.660000e-02   p_cons 2.742500e-01   p_joint 1.515000e-02

Joint ci ratio: 1.951809e-01	ci left: 1.197088e-02	ci right 1.459130e-02	k: 397	n:30000
Cons ci ratio: 3.681199e-02	ci left: 2.692235e-01	ci right 2.793535e-01	k: 8228	n:30000
KS ci ratio: 1.749082e-01	ci left: 1.502500e-02	ci right 1.793639e-02	k: 493	n:30000
ETV1   30000 perm   6 sec   (4782 perm/sec)   p_kst 1.643333e-02   p_cons 2.742667e-01   p_joint 1.323333e-02

Joint ci ratio: 1.444611e-01	ci left: 1.676790e-02	ci right 1.940272e-02	k: 722	n:40000
Cons ci ratio: 3.185615e-02	ci left: 2.702053e-01	ci right 2.789774e-01	k: 10983	n:40000
KS ci ratio: 1.467515e-01	ci left: 1.623762e-02	ci right 1.883310e-02	k: 700	n:40000
ETV1   40000 perm   9 sec   (4680 perm/sec)   p_kst 1.750000e-02   p_cons 2.745750e-01   p_joint 1.805000e-02

Joint ci ratio: 1.207573e-01	ci left: 1.939228e-02	ci right 2.190381e-02	k: 1031	n:50000
Cons ci ratio: 2.836342e-02	ci left: 2.724831e-01	ci right 2.803429e-01	k: 13820	n:50000
KS ci ratio: 1.315840e-01	ci left: 1.629133e-02	ci right 1.860519e-02	k: 871	n:50000
ETV1   50000 perm   11 sec   (4595 perm/sec)   p_kst 1.742000e-02   p_cons 2.764000e-01   p_joint 2.062000e-02

Joint ci ratio: 1.052817e-01	ci left: 2.139310e-02	ci right 2.378672e-02	k: 1354	n:60000
Cons ci ratio: 2.584821e-02	ci left: 2.735047e-01	ci right 2.806835e-01	k: 16625	n:60000
KS ci ratio: 1.194474e-01	ci left: 1.657909e-02	ci right 1.870127e-02	k: 1057	n:60000
ETV1   60000 perm   13 sec   (4502 perm/sec)   p_kst 1.761667e-02   p_cons 2.770833e-01   p_joint 2.256667e-02

Joint ci ratio: 9.991895e-02	ci left: 2.043824e-02	ci right 2.260167e-02	k: 1505	n:70000
Cons ci ratio: 2.393933e-02	ci left: 2.736300e-01	ci right 2.802742e-01	k: 19386	n:70000
KS ci ratio: 1.110149e-01	ci left: 1.652763e-02	ci right 1.848409e-02	k: 1224	n:70000
ETV1   70000 perm   16 sec   (4418 perm/sec)   p_kst 1.748571e-02   p_cons 2.769429e-01   p_joint 2.150000e-02

Joint ci ratio: 9.205819e-02	ci left: 2.114128e-02	ci right 2.319358e-02	k: 1772	n:80000
Cons ci ratio: 2.240619e-02	ci left: 2.736143e-01	ci right 2.798269e-01	k: 22137	n:80000
KS ci ratio: 1.039963e-01	ci left: 1.654174e-02	ci right 1.836849e-02	k: 1395	n:80000
ETV1   80000 perm   18 sec   (4336 perm/sec)   p_kst 1.743750e-02   p_cons 2.767125e-01   p_joint 2.215000e-02

Joint ci ratio: 8.902404e-02	ci left: 2.014923e-02	ci right 2.203737e-02	k: 1897	n:90000
Cons ci ratio: 2.110323e-02	ci left: 2.741998e-01	ci right 2.800590e-01	k: 24941	n:90000
KS ci ratio: 9.854485e-02	ci left: 1.642566e-02	ci right 1.813899e-02	k: 1554	n:90000
ETV1   90000 perm   21 sec   (4261 perm/sec)   p_kst 1.726667e-02   p_cons 2.771222e-01   p_joint 2.107778e-02

Outputting figure to mutsig2_images.part000000000058/ETV1.4_1547_90000_0.017267_0.27712_0.021078.png
                gene_name: ETV1
               theta_stop: 0.099 
                    nperm: 90000 
                     p_ks: 0.017 
        ci_ks_bounds_left: 0.016 
       ci_ks_bounds_right: 0.018 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.021 
     ci_joint_bounds_left: 0.020 
    ci_joint_bounds_right: 0.022 

Current progress: 31 percent done.
ETV6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.275826e-02	ci left: 3.462109e-01	ci right 3.650732e-01	k: 3556	n:10000
Cons ci ratio: 4.754394e-02	ci left: 3.949592e-01	ci right 4.142964e-01	k: 4046	n:10000
KS ci ratio: 1.028651e-01	ci left: 1.202398e-01	ci right 1.333784e-01	k: 1267	n:10000
ETV6   10000 perm   2 sec   (6273 perm/sec)   p_kst 1.267000e-01   p_cons 4.046000e-01   p_joint 3.556000e-01

Joint ci ratio: 4.385511e-02	ci left: 2.791477e-01	ci right 2.917147e-01	k: 5708	n:20000
Cons ci ratio: 3.381448e-02	ci left: 3.950450e-01	ci right 4.086836e-01	k: 8037	n:20000
KS ci ratio: 7.411652e-02	ci left: 1.181338e-01	ci right 1.272762e-01	k: 2453	n:20000
ETV6   20000 perm   4 sec   (5589 perm/sec)   p_kst 1.226500e-01   p_cons 4.018500e-01   p_joint 2.854000e-01

Outputting figure to mutsig2_images.part000000000058/ETV6.4_1391_20000_0.12265_0.40185_0.2854.png
                gene_name: ETV6
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 33 percent done.
EVX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.527447e-02	ci left: 5.426902e-01	ci right 5.622792e-01	k: 5525	n:10000
Cons ci ratio: 4.004989e-02	ci left: 4.793568e-01	ci right 4.990495e-01	k: 4892	n:10000
KS ci ratio: 4.004989e-02	ci left: 4.793568e-01	ci right 4.990495e-01	k: 4892	n:10000
EVX1   10000 perm   2 sec   (6349 perm/sec)   p_kst 4.892000e-01   p_cons 4.892000e-01   p_joint 5.525000e-01

Outputting figure to mutsig2_images.part000000000058/EVX1.4_1236_10000_0.4892_0.4892_0.5525.png
                gene_name: EVX1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 36 percent done.
ERCC6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.242615e-02	ci left: 3.490931e-01	ci right 3.679893e-01	k: 3585	n:10000
Cons ci ratio: 1.763529e-02	ci left: 8.242208e-01	ci right 8.389855e-01	k: 8317	n:10000
KS ci ratio: 8.682941e-02	ci left: 1.618987e-01	ci right 1.766945e-01	k: 1692	n:10000
ERCC6   10000 perm   2 sec   (5116 perm/sec)   p_kst 1.692000e-01   p_cons 8.317000e-01   p_joint 3.585000e-01

Outputting figure to mutsig2_images.part000000000058/ERCC6.3_4562_10000_0.1692_0.8317_0.3585.png
                gene_name: ERCC6
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 38 percent done.
ERCC6L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.052124e-02	ci left: 3.661952e-01	ci right 3.852773e-01	k: 3757	n:10000
Cons ci ratio: 2.293946e-02	ci left: 7.362356e-01	ci right 7.534215e-01	k: 7449	n:10000
KS ci ratio: 8.041364e-02	ci left: 1.842223e-01	ci right 1.997575e-01	k: 1919	n:10000
ERCC6L   10000 perm   2 sec   (5174 perm/sec)   p_kst 1.919000e-01   p_cons 7.449000e-01   p_joint 3.757000e-01

Outputting figure to mutsig2_images.part000000000058/ERCC6L.3_3761_10000_0.1919_0.7449_0.3757.png
                gene_name: ERCC6L
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 40 percent done.
ERCC8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.476979e-01	ci left: 6.092108e-02	ci right 7.073370e-02	k: 657	n:10000
Cons ci ratio: 1.643706e-02	ci left: 8.433592e-01	ci right 8.574360e-01	k: 8505	n:10000
KS ci ratio: 2.380421e-01	ci left: 2.325212e-02	ci right 2.962780e-02	k: 263	n:10000
ERCC8   10000 perm   2 sec   (6292 perm/sec)   p_kst 2.630000e-02   p_cons 8.505000e-01   p_joint 6.570000e-02

Joint ci ratio: 1.089404e-01	ci left: 5.747851e-02	ci right 6.414988e-02	k: 1215	n:20000
Cons ci ratio: 1.159917e-02	ci left: 8.459890e-01	ci right 8.559088e-01	k: 17020	n:20000
KS ci ratio: 1.715217e-01	ci left: 2.326367e-02	ci right 2.767576e-02	k: 508	n:20000
ERCC8   20000 perm   4 sec   (5598 perm/sec)   p_kst 2.540000e-02   p_cons 8.510000e-01   p_joint 6.075000e-02

Joint ci ratio: 9.544401e-02	ci left: 5.068706e-02	ci right 5.579990e-02	k: 1596	n:30000
Cons ci ratio: 9.454298e-03	ci left: 8.473580e-01	ci right 8.554404e-01	k: 25543	n:30000
KS ci ratio: 1.393472e-01	ci left: 2.390657e-02	ci right 2.751941e-02	k: 770	n:30000
ERCC8   30000 perm   6 sec   (5327 perm/sec)   p_kst 2.566667e-02   p_cons 8.514333e-01   p_joint 5.320000e-02

Joint ci ratio: 8.217600e-02	ci left: 5.160889e-02	ci right 5.605616e-02	k: 2152	n:40000
Cons ci ratio: 8.165991e-03	ci left: 8.485830e-01	ci right 8.555658e-01	k: 34084	n:40000
KS ci ratio: 1.219634e-01	ci left: 2.363758e-02	ci right 2.673187e-02	k: 1006	n:40000
ERCC8   40000 perm   8 sec   (5141 perm/sec)   p_kst 2.515000e-02   p_cons 8.521000e-01   p_joint 5.380000e-02

Joint ci ratio: 8.136704e-02	ci left: 4.255218e-02	ci right 4.618096e-02	k: 2217	n:50000
Cons ci ratio: 7.300940e-03	ci left: 8.490588e-01	ci right 8.553003e-01	k: 42610	n:50000
KS ci ratio: 1.099304e-01	ci left: 2.343505e-02	ci right 2.618050e-02	k: 1239	n:50000
ERCC8   50000 perm   10 sec   (4971 perm/sec)   p_kst 2.478000e-02   p_cons 8.522000e-01   p_joint 4.434000e-02

Joint ci ratio: 7.501206e-02	ci left: 4.189800e-02	ci right 4.517967e-02	k: 2611	n:60000
Cons ci ratio: 6.658172e-03	ci left: 8.495869e-01	ci right 8.552790e-01	k: 51147	n:60000
KS ci ratio: 1.000084e-01	ci left: 2.371667e-02	ci right 2.622957e-02	k: 1497	n:60000
ERCC8   60000 perm   12 sec   (4839 perm/sec)   p_kst 2.495000e-02   p_cons 8.524500e-01   p_joint 4.351667e-02

Joint ci ratio: 6.936846e-02	ci left: 4.211312e-02	ci right 4.515343e-02	k: 3053	n:70000
Cons ci ratio: 6.145863e-03	ci left: 8.505565e-01	ci right 8.558142e-01	k: 59724	n:70000
KS ci ratio: 9.258083e-02	ci left: 2.381412e-02	ci right 2.613977e-02	k: 1747	n:70000
ERCC8   70000 perm   15 sec   (4722 perm/sec)   p_kst 2.495714e-02   p_cons 8.532000e-01   p_joint 4.361429e-02

Outputting figure to mutsig2_images.part000000000058/ERCC8.3_1239_70000_0.024957_0.8532_0.043614.png
                gene_name: ERCC8
               theta_stop: 0.093 
                    nperm: 70000 
                     p_ks: 0.025 
        ci_ks_bounds_left: 0.024 
       ci_ks_bounds_right: 0.026 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.044 
     ci_joint_bounds_left: 0.042 
    ci_joint_bounds_right: 0.045 

Current progress: 42 percent done.
ERI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.614451e-02	ci left: 6.829473e-01	ci right 7.011407e-01	k: 6921	n:10000
Cons ci ratio: 3.649665e-02	ci left: 5.257659e-01	ci right 5.454134e-01	k: 5356	n:10000
KS ci ratio: 3.550329e-02	ci left: 5.394848e-01	ci right 5.590865e-01	k: 5493	n:10000
ERI1   10000 perm   2 sec   (6241 perm/sec)   p_kst 5.493000e-01   p_cons 5.356000e-01   p_joint 6.921000e-01

Outputting figure to mutsig2_images.part000000000058/ERI1.3_1078_10000_0.5493_0.5356_0.6921.png
                gene_name: ERI1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 44 percent done.
ERICH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.728142e-02	ci left: 5.151564e-01	ci right 5.348291e-01	k: 5250	n:10000
Cons ci ratio: 4.379671e-02	ci left: 4.349276e-01	ci right 4.545046e-01	k: 4447	n:10000
KS ci ratio: 7.266726e-02	ci left: 2.171426e-01	ci right 2.336177e-01	k: 2253	n:10000
ERICH1   10000 perm   2 sec   (6246 perm/sec)   p_kst 2.253000e-01   p_cons 4.447000e-01   p_joint 5.250000e-01

Outputting figure to mutsig2_images.part000000000058/ERICH1.3_1356_10000_0.2253_0.4447_0.525.png
                gene_name: ERICH1
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.53 

Current progress: 47 percent done.
ERN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.473563e-02	ci left: 7.062425e-01	ci right 7.240320e-01	k: 7152	n:10000
Cons ci ratio: 5.217638e-02	ci left: 3.512799e-01	ci right 3.702013e-01	k: 3607	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
ERN1   10000 perm   2 sec   (5487 perm/sec)   p_kst 1   p_cons 3.607000e-01   p_joint 7.152000e-01

Outputting figure to mutsig2_images.part000000000058/ERN1.3_3022_10000_1_0.3607_0.7152.png
                gene_name: ERN1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.72 

Current progress: 49 percent done.
ESYT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.603533e-02	ci left: 1.644533e-01	ci right 1.793384e-01	k: 1718	n:10000
Cons ci ratio: 8.786218e-02	ci left: 1.586572e-01	ci right 1.733379e-01	k: 1659	n:10000
KS ci ratio: 7.941687e-02	ci left: 1.880620e-01	ci right 2.037156e-01	k: 1958	n:10000
ESYT3   10000 perm   2 sec   (5300 perm/sec)   p_kst 1.958000e-01   p_cons 1.659000e-01   p_joint 1.718000e-01

Outputting figure to mutsig2_images.part000000000058/ESYT3.3_2753_10000_0.1958_0.1659_0.1718.png
                gene_name: ESYT3
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.18 

Current progress: 51 percent done.
ETAA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.135306e-01	ci left: 2.911124e-02	ci right 3.616447e-02	k: 325	n:10000
Cons ci ratio: 3.932758e-02	ci left: 4.884519e-01	ci right 5.081491e-01	k: 4983	n:10000
KS ci ratio: 5.369981e-01	ci left: 3.885975e-03	ci right 6.813584e-03	k: 52	n:10000
ETAA1   10000 perm   2 sec   (5958 perm/sec)   p_kst 5.200000e-03   p_cons 4.983000e-01   p_joint 3.250000e-02

Joint ci ratio: 2.095217e-01	ci left: 1.539613e-02	ci right 1.904617e-02	k: 343	n:20000
Cons ci ratio: 2.757277e-02	ci left: 4.956456e-01	ci right 5.095536e-01	k: 10052	n:20000
KS ci ratio: 3.991121e-01	ci left: 3.844683e-03	ci right 5.803559e-03	k: 95	n:20000
ETAA1   20000 perm   4 sec   (4828 perm/sec)   p_kst 4.750000e-03   p_cons 5.026000e-01   p_joint 1.715000e-02

Joint ci ratio: 1.193079e-01	ci left: 3.265748e-02	ci right 3.683325e-02	k: 1041	n:30000
Cons ci ratio: 2.243572e-02	ci left: 4.986588e-01	ci right 5.100071e-01	k: 15130	n:30000
KS ci ratio: 3.353689e-01	ci left: 3.774267e-03	ci right 5.324092e-03	k: 135	n:30000
ETAA1   30000 perm   6 sec   (4748 perm/sec)   p_kst 4.500000e-03   p_cons 5.043333e-01   p_joint 3.470000e-02

Joint ci ratio: 1.150575e-01	ci left: 2.657522e-02	ci right 2.984375e-02	k: 1127	n:40000
Cons ci ratio: 1.937904e-02	ci left: 5.007376e-01	ci right 5.105615e-01	k: 20226	n:40000
KS ci ratio: 2.907077e-01	ci left: 3.867775e-03	ci right 5.205722e-03	k: 180	n:40000
ETAA1   40000 perm   9 sec   (4674 perm/sec)   p_kst 4.500000e-03   p_cons 5.056500e-01   p_joint 2.817500e-02

Joint ci ratio: 1.325935e-01	ci left: 1.603978e-02	ci right 1.833677e-02	k: 858	n:50000
Cons ci ratio: 1.735929e-02	ci left: 5.005074e-01	ci right 5.092920e-01	k: 25245	n:50000
KS ci ratio: 2.291225e-01	ci left: 5.153222e-03	ci right 6.505122e-03	k: 290	n:50000
ETAA1   50000 perm   11 sec   (4588 perm/sec)   p_kst 5.800000e-03   p_cons 5.049000e-01   p_joint 1.716000e-02

Joint ci ratio: 1.113614e-01	ci left: 1.910545e-02	ci right 2.137463e-02	k: 1213	n:60000
Cons ci ratio: 1.584951e-02	ci left: 5.008076e-01	ci right 5.088253e-01	k: 30289	n:60000
KS ci ratio: 2.065577e-01	ci left: 5.350293e-03	ci right 6.598220e-03	k: 357	n:60000
ETAA1   60000 perm   13 sec   (4509 perm/sec)   p_kst 5.950000e-03   p_cons 5.048167e-01   p_joint 2.021667e-02

Joint ci ratio: 1.098345e-01	ci left: 1.688897e-02	ci right 1.886557e-02	k: 1250	n:70000
Cons ci ratio: 1.469322e-02	ci left: 5.004460e-01	ci right 5.078679e-01	k: 35291	n:70000
KS ci ratio: 1.909292e-01	ci left: 5.414102e-03	ci right 6.570281e-03	k: 418	n:70000
ETAA1   70000 perm   16 sec   (4432 perm/sec)   p_kst 5.971429e-03   p_cons 5.041571e-01   p_joint 1.785714e-02

Joint ci ratio: 7.305703e-02	ci left: 3.346697e-02	ci right 3.601691e-02	k: 2778	n:80000
Cons ci ratio: 1.328636e-02	ci left: 5.176189e-01	ci right 5.245546e-01	k: 41687	n:80000
KS ci ratio: 1.808646e-01	ci left: 5.309406e-03	ci right 6.376910e-03	k: 466	n:80000
ETAA1   80000 perm   18 sec   (4358 perm/sec)   p_kst 5.825000e-03   p_cons 5.210875e-01   p_joint 3.472500e-02

Joint ci ratio: 7.217756e-02	ci left: 3.058677e-02	ci right 3.288799e-02	k: 2855	n:90000
Cons ci ratio: 1.253514e-02	ci left: 5.174745e-01	ci right 5.240131e-01	k: 46867	n:90000
KS ci ratio: 1.727467e-01	ci left: 5.197325e-03	ci right 6.190498e-03	k: 511	n:90000
ETAA1   90000 perm   21 sec   (4284 perm/sec)   p_kst 5.677778e-03   p_cons 5.207444e-01   p_joint 3.172222e-02

Joint ci ratio: 7.501648e-02	ci left: 2.558198e-02	ci right 2.758561e-02	k: 2657	n:100000
Cons ci ratio: 1.190130e-02	ci left: 5.172480e-01	ci right 5.234508e-01	k: 52035	n:100000
KS ci ratio: 1.637213e-01	ci left: 5.233192e-03	ci right 6.175826e-03	k: 569	n:100000
ETAA1   100000 perm   24 sec   (4212 perm/sec)   p_kst 5.690000e-03   p_cons 5.203500e-01   p_joint 2.657000e-02

Joint ci ratio: 7.440968e-02	ci left: 2.369261e-02	ci right 2.553258e-02	k: 2706	n:110000
Cons ci ratio: 1.135231e-02	ci left: 5.171790e-01	ci right 5.230927e-01	k: 57215	n:110000
KS ci ratio: 1.557280e-01	ci left: 5.281119e-03	ci right 6.181606e-03	k: 629	n:110000
ETAA1   110000 perm   27 sec   (4142 perm/sec)   p_kst 5.718182e-03   p_cons 5.201364e-01   p_joint 2.460000e-02

Joint ci ratio: 6.693960e-02	ci left: 2.685250e-02	ci right 2.872041e-02	k: 3333	n:120000
Cons ci ratio: 1.086383e-02	ci left: 5.175438e-01	ci right 5.232053e-01	k: 62445	n:120000
KS ci ratio: 1.486932e-01	ci left: 5.330014e-03	ci right 6.194134e-03	k: 690	n:120000
ETAA1   120000 perm   29 sec   (4072 perm/sec)   p_kst 5.750000e-03   p_cons 5.203750e-01   p_joint 2.777500e-02

Joint ci ratio: 7.428818e-02	ci left: 2.018966e-02	ci right 2.175489e-02	k: 2725	n:130000
Cons ci ratio: 1.044050e-02	ci left: 5.175184e-01	ci right 5.229576e-01	k: 67631	n:130000
KS ci ratio: 1.421533e-01	ci left: 5.401840e-03	ci right 6.235820e-03	k: 755	n:130000
ETAA1   130000 perm   32 sec   (4008 perm/sec)   p_kst 5.807692e-03   p_cons 5.202385e-01   p_joint 2.096154e-02

Joint ci ratio: 7.872892e-02	ci left: 1.671450e-02	ci right 1.809131e-02	k: 2435	n:140000
Cons ci ratio: 1.006985e-02	ci left: 5.171647e-01	ci right 5.224059e-01	k: 72770	n:140000
KS ci ratio: 1.374206e-01	ci left: 5.381324e-03	ci right 6.182211e-03	k: 808	n:140000
ETAA1   140000 perm   35 sec   (3945 perm/sec)   p_kst 5.771429e-03   p_cons 5.197857e-01   p_joint 1.739286e-02

Joint ci ratio: 7.707234e-02	ci left: 1.629950e-02	ci right 1.761260e-02	k: 2542	n:150000
Cons ci ratio: 9.723062e-03	ci left: 5.175280e-01	ci right 5.225912e-01	k: 78009	n:150000
KS ci ratio: 1.318299e-01	ci left: 5.473539e-03	ci right 6.252414e-03	k: 878	n:150000
ETAA1   150000 perm   39 sec   (3884 perm/sec)   p_kst 5.853333e-03   p_cons 5.200600e-01   p_joint 1.694667e-02

Joint ci ratio: 7.954874e-02	ci left: 1.435493e-02	ci right 1.555024e-02	k: 2391	n:160000
Cons ci ratio: 9.409560e-03	ci left: 5.178611e-01	ci right 5.227632e-01	k: 83250	n:160000
KS ci ratio: 1.281673e-01	ci left: 5.439821e-03	ci right 6.190756e-03	k: 929	n:160000
ETAA1   160000 perm   42 sec   (3817 perm/sec)   p_kst 5.806250e-03   p_cons 5.203125e-01   p_joint 1.494375e-02

Joint ci ratio: 7.465632e-02	ci left: 1.536267e-02	ci right 1.655980e-02	k: 2712	n:170000
Cons ci ratio: 9.132182e-03	ci left: 5.177395e-01	ci right 5.224951e-01	k: 88420	n:170000
KS ci ratio: 1.244119e-01	ci left: 5.444535e-03	ci right 6.172474e-03	k: 986	n:170000
ETAA1   170000 perm   45 sec   (3759 perm/sec)   p_kst 5.800000e-03   p_cons 5.201176e-01   p_joint 1.595294e-02

Joint ci ratio: 7.374354e-02	ci left: 1.488527e-02	ci right 1.603041e-02	k: 2781	n:180000
Cons ci ratio: 8.881330e-03	ci left: 5.174444e-01	ci right 5.220660e-01	k: 93556	n:180000
KS ci ratio: 1.205624e-01	ci left: 5.486730e-03	ci right 6.195994e-03	k: 1050	n:180000
ETAA1   180000 perm   49 sec   (3689 perm/sec)   p_kst 5.833333e-03   p_cons 5.197556e-01   p_joint 1.545000e-02

Joint ci ratio: 6.801104e-02	ci left: 1.659943e-02	ci right 1.777326e-02	k: 3264	n:190000
Cons ci ratio: 8.642683e-03	ci left: 5.176085e-01	ci right 5.221067e-01	k: 98773	n:190000
KS ci ratio: 1.175275e-01	ci left: 5.478807e-03	ci right 6.167981e-03	k: 1105	n:190000
ETAA1   190000 perm   52 sec   (3636 perm/sec)   p_kst 5.815789e-03   p_cons 5.198579e-01   p_joint 1.717895e-02

Joint ci ratio: 6.014147e-02	ci left: 2.017406e-02	ci right 2.142988e-02	k: 4159	n:200000
Cons ci ratio: 8.425079e-03	ci left: 5.175926e-01	ci right 5.219768e-01	k: 103957	n:200000
KS ci ratio: 1.145126e-01	ci left: 5.491308e-03	ci right 6.163136e-03	k: 1164	n:200000
ETAA1   200000 perm   56 sec   (3585 perm/sec)   p_kst 5.820000e-03   p_cons 5.197850e-01   p_joint 2.079500e-02

Joint ci ratio: 6.010559e-02	ci left: 1.925533e-02	ci right 2.045321e-02	k: 4168	n:210000
Cons ci ratio: 8.225242e-03	ci left: 5.174510e-01	ci right 5.217294e-01	k: 109114	n:210000
KS ci ratio: 1.120412e-01	ci left: 5.470417e-03	ci right 6.124290e-03	k: 1216	n:210000
ETAA1   210000 perm   59 sec   (3538 perm/sec)   p_kst 5.790476e-03   p_cons 5.195905e-01   p_joint 1.984762e-02

Joint ci ratio: 6.236608e-02	ci left: 1.709043e-02	ci right 1.819505e-02	k: 3880	n:220000
Cons ci ratio: 8.039346e-03	ci left: 5.173006e-01	ci right 5.214807e-01	k: 114266	n:220000
KS ci ratio: 1.097666e-01	ci left: 5.447146e-03	ci right 6.084164e-03	k: 1267	n:220000
ETAA1   220000 perm   63 sec   (3492 perm/sec)   p_kst 5.759091e-03   p_cons 5.193909e-01   p_joint 1.763636e-02

Joint ci ratio: 6.131451e-02	ci left: 1.692521e-02	ci right 1.800005e-02	k: 4015	n:230000
Cons ci ratio: 7.857498e-03	ci left: 5.176732e-01	ci right 5.217611e-01	k: 119535	n:230000
KS ci ratio: 1.072984e-01	ci left: 5.459874e-03	ci right 6.083116e-03	k: 1326	n:230000
ETAA1   230000 perm   67 sec   (3445 perm/sec)   p_kst 5.765217e-03   p_cons 5.197174e-01   p_joint 1.745652e-02

Joint ci ratio: 6.195992e-02	ci left: 1.589563e-02	ci right 1.691609e-02	k: 3936	n:240000
Cons ci ratio: 7.686167e-03	ci left: 5.180989e-01	ci right 5.221006e-01	k: 124824	n:240000
KS ci ratio: 1.049514e-01	ci left: 5.475745e-03	ci right 6.086283e-03	k: 1386	n:240000
ETAA1   240000 perm   71 sec   (3403 perm/sec)   p_kst 5.775000e-03   p_cons 5.201000e-01   p_joint 1.640000e-02

Joint ci ratio: 6.116488e-02	ci left: 1.566935e-02	ci right 1.666191e-02	k: 4040	n:250000
Cons ci ratio: 7.530153e-03	ci left: 5.181874e-01	ci right 5.221081e-01	k: 130037	n:250000
KS ci ratio: 1.026451e-01	ci left: 5.502177e-03	ci right 6.101367e-03	k: 1449	n:250000
ETAA1   250000 perm   74 sec   (3361 perm/sec)   p_kst 5.796000e-03   p_cons 5.201480e-01   p_joint 1.616000e-02

Joint ci ratio: 5.983717e-02	ci left: 1.575232e-02	ci right 1.672773e-02	k: 4221	n:260000
Cons ci ratio: 7.382301e-03	ci left: 5.183352e-01	ci right 5.221797e-01	k: 135267	n:260000
KS ci ratio: 1.006854e-01	ci left: 5.504212e-03	ci right 6.091503e-03	k: 1506	n:260000
ETAA1   260000 perm   78 sec   (3316 perm/sec)   p_kst 5.792308e-03   p_cons 5.202577e-01   p_joint 1.623462e-02

Joint ci ratio: 5.035562e-02	ci left: 2.139879e-02	ci right 2.250780e-02	k: 5926	n:270000
Cons ci ratio: 7.244174e-03	ci left: 5.183802e-01	ci right 5.221527e-01	k: 140472	n:270000
KS ci ratio: 9.870690e-02	ci left: 5.520647e-03	ci right 6.097446e-03	k: 1567	n:270000
ETAA1   270000 perm   82 sec   (3275 perm/sec)   p_kst 5.803704e-03   p_cons 5.202667e-01   p_joint 2.194815e-02

Outputting figure to mutsig2_images.part000000000058/ETAA1.3_2805_270000_0.0058037_0.52027_0.021948.png
                gene_name: ETAA1
               theta_stop: 0.099 
                    nperm: 270000 
                     p_ks: 0.0058 
        ci_ks_bounds_left: 0.0055 
       ci_ks_bounds_right: 0.0061 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.022 
     ci_joint_bounds_left: 0.021 
    ci_joint_bounds_right: 0.023 

Current progress: 53 percent done.
ETFA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.923175e-02	ci left: 6.331167e-01	ci right 6.520002e-01	k: 6426	n:10000
Cons ci ratio: 5.764585e-02	ci left: 3.069917e-01	ci right 3.253155e-01	k: 3161	n:10000
KS ci ratio: 4.440474e-02	ci left: 4.281453e-01	ci right 4.476909e-01	k: 4379	n:10000
ETFA   10000 perm   2 sec   (6235 perm/sec)   p_kst 4.379000e-01   p_cons 3.161000e-01   p_joint 6.426000e-01

Outputting figure to mutsig2_images.part000000000058/ETFA.3_1050_10000_0.4379_0.3161_0.6426.png
                gene_name: ETFA
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 56 percent done.
ETNK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.447022e-02	ci left: 3.318056e-01	ci right 3.504870e-01	k: 3411	n:10000
Cons ci ratio: 3.768697e-02	ci left: 5.097532e-01	ci right 5.294354e-01	k: 5196	n:10000
KS ci ratio: 9.176931e-02	ci left: 1.471732e-01	ci right 1.614288e-01	k: 1542	n:10000
ETNK1   10000 perm   2 sec   (6207 perm/sec)   p_kst 1.542000e-01   p_cons 5.196000e-01   p_joint 3.411000e-01

Outputting figure to mutsig2_images.part000000000058/ETNK1.3_1489_10000_0.1542_0.5196_0.3411.png
                gene_name: ETNK1
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 58 percent done.
ETV3L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.253245e-02	ci left: 5.823922e-01	ci right 6.017541e-01	k: 5921	n:10000
KS ci ratio: 8.838341e-03	ci left: 9.473144e-01	ci right 9.558201e-01	k: 9517	n:10000
ETV3L   10000 perm   2 sec   (6385 perm/sec)   p_kst 9.517000e-01   p_cons 5.921000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000058/ETV3L.3_1106_10000_0.9517_0.5921_1.png
                gene_name: ETV3L
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 60 percent done.
EVI5L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.772737e-01	ci left: 5.108009e-03	ci right 8.389267e-03	k: 66	n:10000
Cons ci ratio: 3.231538e-01	ci left: 1.215729e-02	ci right 1.693165e-02	k: 144	n:10000
KS ci ratio: 3.064274e-01	ci left: 1.363247e-02	ci right 1.865513e-02	k: 160	n:10000
EVI5L   10000 perm   2 sec   (5737 perm/sec)   p_kst 1.600000e-02   p_cons 1.440000e-02   p_joint 6.600000e-03

Joint ci ratio: 1.526953e-01	ci left: 2.945960e-02	ci right 3.437773e-02	k: 637	n:20000
Cons ci ratio: 1.765700e-01	ci left: 2.192330e-02	ci right 2.621660e-02	k: 480	n:20000
KS ci ratio: 2.273197e-01	ci left: 1.298353e-02	ci right 1.635973e-02	k: 292	n:20000
EVI5L   20000 perm   4 sec   (5100 perm/sec)   p_kst 1.460000e-02   p_cons 2.400000e-02   p_joint 3.185000e-02

Joint ci ratio: 2.123298e-01	ci left: 1.004002e-02	ci right 1.245603e-02	k: 336	n:30000
Cons ci ratio: 1.440166e-01	ci left: 2.236198e-02	ci right 2.586435e-02	k: 722	n:30000
KS ci ratio: 1.846502e-01	ci left: 1.343225e-02	ci right 1.619621e-02	k: 443	n:30000
EVI5L   30000 perm   6 sec   (4769 perm/sec)   p_kst 1.476667e-02   p_cons 2.406667e-02   p_joint 1.120000e-02

Joint ci ratio: 1.529780e-01	ci left: 1.491337e-02	ci right 1.740758e-02	k: 645	n:40000
Cons ci ratio: 1.246563e-01	ci left: 2.261923e-02	ci right 2.565040e-02	k: 964	n:40000
KS ci ratio: 1.546906e-01	ci left: 1.457665e-02	ci right 1.704437e-02	k: 631	n:40000
EVI5L   40000 perm   9 sec   (4556 perm/sec)   p_kst 1.577500e-02   p_cons 2.410000e-02   p_joint 1.612500e-02

Joint ci ratio: 1.042888e-01	ci left: 2.604508e-02	ci right 2.893013e-02	k: 1373	n:50000
Cons ci ratio: 1.102041e-01	ci left: 2.331828e-02	ci right 2.605728e-02	k: 1233	n:50000
KS ci ratio: 1.427370e-01	ci left: 1.379841e-02	ci right 1.593845e-02	k: 742	n:50000
EVI5L   50000 perm   11 sec   (4458 perm/sec)   p_kst 1.484000e-02   p_cons 2.466000e-02   p_joint 2.746000e-02

Joint ci ratio: 1.101633e-01	ci left: 1.952700e-02	ci right 2.181969e-02	k: 1239	n:60000
Cons ci ratio: 1.010510e-01	ci left: 2.322894e-02	ci right 2.571735e-02	k: 1467	n:60000
KS ci ratio: 1.301969e-01	ci left: 1.391351e-02	ci right 1.586715e-02	k: 892	n:60000
EVI5L   60000 perm   14 sec   (4374 perm/sec)   p_kst 1.486667e-02   p_cons 2.445000e-02   p_joint 2.065000e-02

Joint ci ratio: 8.879761e-02	ci left: 2.588167e-02	ci right 2.830060e-02	k: 1895	n:70000
Cons ci ratio: 9.304592e-02	ci left: 2.357677e-02	ci right 2.589143e-02	k: 1730	n:70000
KS ci ratio: 1.214795e-01	ci left: 1.376604e-02	ci right 1.556023e-02	k: 1025	n:70000
EVI5L   70000 perm   16 sec   (4299 perm/sec)   p_kst 1.464286e-02   p_cons 2.471429e-02   p_joint 2.707143e-02

Joint ci ratio: 8.591402e-02	ci left: 2.427177e-02	ci right 2.646284e-02	k: 2028	n:80000
Cons ci ratio: 8.695290e-02	ci left: 2.369666e-02	ci right 2.586299e-02	k: 1981	n:80000
KS ci ratio: 1.114159e-01	ci left: 1.438787e-02	ci right 1.609755e-02	k: 1218	n:80000
EVI5L   80000 perm   19 sec   (4218 perm/sec)   p_kst 1.522500e-02   p_cons 2.476250e-02   p_joint 2.535000e-02

Joint ci ratio: 8.535211e-02	ci left: 2.192170e-02	ci right 2.388700e-02	k: 2060	n:90000
Cons ci ratio: 8.248882e-02	ci left: 2.346712e-02	ci right 2.549702e-02	k: 2202	n:90000
KS ci ratio: 1.054892e-01	ci left: 1.431337e-02	ci right 1.591810e-02	k: 1359	n:90000
EVI5L   90000 perm   22 sec   (4147 perm/sec)   p_kst 1.510000e-02   p_cons 2.446667e-02   p_joint 2.288889e-02

Joint ci ratio: 8.170547e-02	ci left: 2.157989e-02	ci right 2.342794e-02	k: 2249	n:100000
Cons ci ratio: 7.794266e-02	ci left: 2.370759e-02	ci right 2.564012e-02	k: 2466	n:100000
KS ci ratio: 9.991190e-02	ci left: 1.440201e-02	ci right 1.592630e-02	k: 1515	n:100000
EVI5L   100000 perm   24 sec   (4084 perm/sec)   p_kst 1.515000e-02   p_cons 2.466000e-02   p_joint 2.249000e-02

Outputting figure to mutsig2_images.part000000000058/EVI5L.3_2494_100000_0.01515_0.02466_0.02249.png
                gene_name: EVI5L
               theta_stop: 0.100 
                    nperm: 100000 
                     p_ks: 0.015 
        ci_ks_bounds_left: 0.014 
       ci_ks_bounds_right: 0.016 
                   p_cons: 0.025 
      ci_cons_bounds_left: 0.024 
     ci_cons_bounds_right: 0.026 
                  p_joint: 0.022 
     ci_joint_bounds_left: 0.022 
    ci_joint_bounds_right: 0.023 

Current progress: 62 percent done.
EXD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.346137e-02	ci left: 4.387185e-01	ci right 4.583115e-01	k: 4485	n:10000
Cons ci ratio: 1.510206e-02	ci left: 8.640678e-01	ci right 8.773155e-01	k: 8708	n:10000
KS ci ratio: 7.577795e-02	ci left: 2.030380e-01	ci right 2.191306e-01	k: 2110	n:10000
EXD2   10000 perm   2 sec   (6006 perm/sec)   p_kst 2.110000e-01   p_cons 8.708000e-01   p_joint 4.485000e-01

Outputting figure to mutsig2_images.part000000000058/EXD2.3_1519_10000_0.211_0.8708_0.4485.png
                gene_name: EXD2
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 64 percent done.
ERC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.426411e-02	ci left: 2.097433e-01	ci right 2.260214e-01	k: 2178	n:10000
Cons ci ratio: 8.924358e-03	ci left: 9.463777e-01	ci right 9.549573e-01	k: 9508	n:10000
KS ci ratio: 1.239631e-01	ci left: 8.523830e-02	ci right 9.660131e-02	k: 908	n:10000
ERC2   10000 perm   2 sec   (5453 perm/sec)   p_kst 9.080000e-02   p_cons 9.508000e-01   p_joint 2.178000e-01

Joint ci ratio: 6.325163e-02	ci left: 1.559803e-01	ci right 1.662185e-01	k: 3221	n:20000
Cons ci ratio: 6.477844e-03	ci left: 9.450891e-01	ci right 9.512797e-01	k: 18965	n:20000
KS ci ratio: 8.792318e-02	ci left: 8.641161e-02	ci right 9.440794e-02	k: 1807	n:20000
ERC2   20000 perm   4 sec   (4876 perm/sec)   p_kst 9.035000e-02   p_cons 9.482500e-01   p_joint 1.610500e-01

Outputting figure to mutsig2_images.part000000000058/ERC2.2_2928_20000_0.09035_0.94825_0.16105.png
                gene_name: ERC2
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.090 
        ci_ks_bounds_left: 0.086 
       ci_ks_bounds_right: 0.094 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 67 percent done.
ERCC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.096428e-02	ci left: 7.693191e-01	ci right 7.857189e-01	k: 7776	n:10000
Cons ci ratio: 4.549450e-02	ci left: 4.162808e-01	ci right 4.357623e-01	k: 4260	n:10000
KS ci ratio: 2.173246e-02	ci left: 7.564621e-01	ci right 7.731834e-01	k: 7649	n:10000
ERCC4   10000 perm   2 sec   (5789 perm/sec)   p_kst 7.649000e-01   p_cons 4.260000e-01   p_joint 7.776000e-01

Outputting figure to mutsig2_images.part000000000058/ERCC4.2_2795_10000_0.7649_0.426_0.7776.png
                gene_name: ERCC4
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 69 percent done.
ERF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.551852e-02	ci left: 2.548856e-01	ci right 2.722523e-01	k: 2635	n:10000
Cons ci ratio: 1.298648e-01	ci left: 7.805288e-02	ci right 8.899118e-02	k: 834	n:10000
KS ci ratio: 6.927536e-03	ci left: 9.662559e-01	ci right 9.730668e-01	k: 9698	n:10000
ERF   10000 perm   2 sec   (6218 perm/sec)   p_kst 9.698000e-01   p_cons 8.340000e-02   p_joint 2.635000e-01

Joint ci ratio: 5.360787e-02	ci left: 2.052636e-01	ci right 2.166206e-01	k: 4218	n:20000
Cons ci ratio: 9.509900e-02	ci left: 7.456446e-02	ci right 8.205869e-02	k: 1565	n:20000
KS ci ratio: 4.742690e-03	ci left: 9.692032e-01	ci right 9.738584e-01	k: 19432	n:20000
ERF   20000 perm   4 sec   (5489 perm/sec)   p_kst 9.716000e-01   p_cons 7.825000e-02   p_joint 2.109000e-01

Outputting figure to mutsig2_images.part000000000058/ERF.2_1663_20000_0.9716_0.07825_0.2109.png
                gene_name: ERF
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.078 
      ci_cons_bounds_left: 0.075 
     ci_cons_bounds_right: 0.082 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 71 percent done.
ERI2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.605321e-03	ci left: 9.942123e-01	ci right 9.968864e-01	k: 9957	n:10000
KS ci ratio: 9.150557e-03	ci left: 9.438819e-01	ci right 9.526547e-01	k: 9484	n:10000
ERI2   10000 perm   2 sec   (5940 perm/sec)   p_kst 9.484000e-01   p_cons 9.957000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000058/ERI2.2_2379_10000_0.9484_0.9957_1.png
                gene_name: ERI2
               theta_stop: 0.0092 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 1.00 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 1.00 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
ERMP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.170830e-02	ci left: 7.568669e-01	ci right 7.735784e-01	k: 7653	n:10000
Cons ci ratio: 2.390573e-02	ci left: 7.200716e-01	ci right 7.375949e-01	k: 7289	n:10000
KS ci ratio: 2.633479e-02	ci left: 6.798232e-01	ci right 6.980666e-01	k: 6890	n:10000
ERMP1   10000 perm   2 sec   (4050 perm/sec)   p_kst 6.890000e-01   p_cons 7.289000e-01   p_joint 7.653000e-01

Outputting figure to mutsig2_images.part000000000058/ERMP1.2_2775_10000_0.689_0.7289_0.7653.png
                gene_name: ERMP1
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 76 percent done.
ERO1LB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.248696e-02	ci left: 7.438177e-01	ci right 7.608351e-01	k: 7524	n:10000
KS ci ratio: 2.887004e-02	ci left: 6.388490e-01	ci right 6.576645e-01	k: 6483	n:10000
ERO1LB   10000 perm   2 sec   (6365 perm/sec)   p_kst 6.483000e-01   p_cons 7.524000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000058/ERO1LB.2_1468_10000_0.6483_0.7524_1.png
                gene_name: ERO1LB
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
ESCO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.193667e-02	ci left: 2.770574e-01	ci right 2.948674e-01	k: 2859	n:10000
Cons ci ratio: 1.963134e-02	ci left: 7.915161e-01	ci right 8.073091e-01	k: 7995	n:10000
KS ci ratio: 9.484152e-02	ci left: 1.389371e-01	ci right 1.528699e-01	k: 1458	n:10000
ESCO1   10000 perm   2 sec   (5802 perm/sec)   p_kst 1.458000e-01   p_cons 7.995000e-01   p_joint 2.859000e-01

Outputting figure to mutsig2_images.part000000000058/ESCO1.2_2559_10000_0.1458_0.7995_0.2859.png
                gene_name: ESCO1
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 80 percent done.
ESR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.827759e-02	ci left: 2.393626e-01	ci right 2.563846e-01	k: 2478	n:10000
KS ci ratio: 5.719572e-02	ci left: 3.103647e-01	ci right 3.287406e-01	k: 3195	n:10000
ESR2   10000 perm   2 sec   (6171 perm/sec)   p_kst 3.195000e-01   p_cons 2.478000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000058/ESR2.2_1711_10000_0.3195_0.2478_1.png
                gene_name: ESR2
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
ESRP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.502819e-02	ci left: 8.651913e-01	ci right 8.783912e-01	k: 8719	n:10000
KS ci ratio: 3.813473e-02	ci left: 5.038511e-01	ci right 5.235409e-01	k: 5137	n:10000
ESRP1   10000 perm   2 sec   (6199 perm/sec)   p_kst 5.137000e-01   p_cons 8.719000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000058/ESRP1.2_2131_10000_0.5137_0.8719_1.png
                gene_name: ESRP1
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
ESX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.300083e-02	ci left: 3.441241e-01	ci right 3.629613e-01	k: 3535	n:10000
Cons ci ratio: 4.375241e-02	ci left: 4.354264e-01	ci right 4.550056e-01	k: 4452	n:10000
KS ci ratio: 9.764019e-02	ci left: 1.319816e-01	ci right 1.456295e-01	k: 1387	n:10000
ESX1   10000 perm   2 sec   (6385 perm/sec)   p_kst 1.387000e-01   p_cons 4.452000e-01   p_joint 3.535000e-01

Outputting figure to mutsig2_images.part000000000058/ESX1.2_1237_10000_0.1387_0.4452_0.3535.png
                gene_name: ESX1
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 87 percent done.
ETF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.473387e-01	ci left: 6.121070e-02	ci right 7.104390e-02	k: 660	n:10000
Cons ci ratio: 1.511704e-01	ci left: 5.821938e-02	ci right 6.783712e-02	k: 629	n:10000
KS ci ratio: 2.105447e-01	ci left: 2.996481e-02	ci right 3.711029e-02	k: 334	n:10000
ETF1   10000 perm   2 sec   (6356 perm/sec)   p_kst 3.340000e-02   p_cons 6.290000e-02   p_joint 6.600000e-02

Joint ci ratio: 2.273197e-01	ci left: 1.298353e-02	ci right 1.635973e-02	k: 292	n:20000
Cons ci ratio: 1.064011e-01	ci left: 6.015897e-02	ci right 6.696859e-02	k: 1270	n:20000
KS ci ratio: 1.468522e-01	ci left: 3.186878e-02	ci right 3.696774e-02	k: 687	n:20000
ETF1   20000 perm   4 sec   (5623 perm/sec)   p_kst 3.435000e-02   p_cons 6.350000e-02   p_joint 1.460000e-02

Joint ci ratio: 2.563593e-01	ci left: 6.742109e-03	ci right 8.754981e-03	k: 231	n:30000
Cons ci ratio: 8.777750e-02	ci left: 5.959078e-02	ci right 6.509435e-02	k: 1869	n:30000
KS ci ratio: 1.220021e-01	ci left: 3.123366e-02	ci right 3.532405e-02	k: 997	n:30000
ETF1   30000 perm   6 sec   (5362 perm/sec)   p_kst 3.323333e-02   p_cons 6.230000e-02   p_joint 7.700000e-03

Joint ci ratio: 6.992166e-02	ci left: 7.029710e-02	ci right 7.541512e-02	k: 2913	n:40000
Cons ci ratio: 7.557166e-02	ci left: 6.063829e-02	ci right 6.542538e-02	k: 2520	n:40000
KS ci ratio: 1.051948e-01	ci left: 3.178243e-02	ci right 3.533570e-02	k: 1341	n:40000
ETF1   40000 perm   8 sec   (5185 perm/sec)   p_kst 3.352500e-02   p_cons 6.300000e-02   p_joint 7.282500e-02

Joint ci ratio: 6.276794e-02	ci left: 7.008424e-02	ci right 7.464556e-02	k: 3617	n:50000
Cons ci ratio: 6.760780e-02	ci left: 6.086611e-02	ci right 6.514480e-02	k: 3149	n:50000
KS ci ratio: 9.454223e-02	ci left: 3.166633e-02	ci right 3.482817e-02	k: 1661	n:50000
ETF1   50000 perm   10 sec   (5000 perm/sec)   p_kst 3.322000e-02   p_cons 6.298000e-02   p_joint 7.234000e-02

Outputting figure to mutsig2_images.part000000000058/ETF1.2_1354_50000_0.03322_0.06298_0.07234.png
                gene_name: ETF1
               theta_stop: 0.095 
                    nperm: 50000 
                     p_ks: 0.033 
        ci_ks_bounds_left: 0.032 
       ci_ks_bounds_right: 0.035 
                   p_cons: 0.063 
      ci_cons_bounds_left: 0.061 
     ci_cons_bounds_right: 0.065 
                  p_joint: 0.072 
     ci_joint_bounds_left: 0.070 
    ci_joint_bounds_right: 0.075 

Current progress: 89 percent done.
ETFDH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.693157e-02	ci left: 8.355163e-01	ci right 8.498835e-01	k: 8428	n:10000
Cons ci ratio: 5.962295e-02	ci left: 2.927127e-01	ci right 3.108030e-01	k: 3017	n:10000
KS ci ratio: 3.342233e-02	ci left: 5.692514e-01	ci right 5.887025e-01	k: 5790	n:10000
ETFDH   10000 perm   2 sec   (5746 perm/sec)   p_kst 5.790000e-01   p_cons 3.017000e-01   p_joint 8.428000e-01

Outputting figure to mutsig2_images.part000000000058/ETFDH.2_1906_10000_0.579_0.3017_0.8428.png
                gene_name: ETFDH
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 91 percent done.
ETS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.592994e-02	ci left: 8.513105e-01	ci right 8.650802e-01	k: 8583	n:10000
KS ci ratio: 1.955174e-02	ci left: 7.928348e-01	ci right 8.085896e-01	k: 8008	n:10000
ETS1   10000 perm   2 sec   (6253 perm/sec)   p_kst 8.008000e-01   p_cons 8.583000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000058/ETS1.2_1580_10000_0.8008_0.8583_1.png
                gene_name: ETS1
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
ETV3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.870972e-01	ci left: 1.567108e-02	ci right 2.101476e-02	k: 182	n:10000
Cons ci ratio: 7.829804e-01	ci left: 1.538312e-03	ci right 3.568919e-03	k: 24	n:10000
KS ci ratio: 1.858267e-01	ci left: 3.863000e-02	ci right 4.663920e-02	k: 425	n:10000
ETV3   10000 perm   2 sec   (6281 perm/sec)   p_kst 4.250000e-02   p_cons 2.400000e-03   p_joint 1.820000e-02

Joint ci ratio: 2.120444e-01	ci left: 1.501694e-02	ci right 1.862551e-02	k: 335	n:20000
Cons ci ratio: 5.772931e-01	ci left: 1.641624e-03	ci right 3.009532e-03	k: 45	n:20000
KS ci ratio: 1.337986e-01	ci left: 3.839058e-02	ci right 4.394383e-02	k: 822	n:20000
ETV3   20000 perm   4 sec   (5542 perm/sec)   p_kst 4.110000e-02   p_cons 2.250000e-03   p_joint 1.675000e-02

Joint ci ratio: 1.743706e-01	ci left: 1.512069e-02	ci right 1.804068e-02	k: 496	n:30000
Cons ci ratio: 4.679749e-01	ci left: 1.789965e-03	ci right 2.909908e-03	k: 69	n:30000
KS ci ratio: 1.091778e-01	ci left: 3.894635e-02	ci right 4.347638e-02	k: 1235	n:30000
ETV3   30000 perm   6 sec   (5286 perm/sec)   p_kst 4.116667e-02   p_cons 2.300000e-03   p_joint 1.653333e-02

Joint ci ratio: 2.301523e-01	ci left: 6.371322e-03	ci right 8.051413e-03	k: 287	n:40000
Cons ci ratio: 4.038368e-01	ci left: 1.876973e-03	ci right 2.847537e-03	k: 93	n:40000
KS ci ratio: 9.294503e-02	ci left: 4.059277e-02	ci right 4.457398e-02	k: 1702	n:40000
ETV3   40000 perm   8 sec   (5119 perm/sec)   p_kst 4.255000e-02   p_cons 2.325000e-03   p_joint 7.175000e-03

Joint ci ratio: 2.044299e-01	ci left: 6.553571e-03	ci right 8.064478e-03	k: 364	n:50000
Cons ci ratio: 3.667192e-01	ci left: 1.862912e-03	ci right 2.716522e-03	k: 113	n:50000
KS ci ratio: 8.298526e-02	ci left: 4.094444e-02	ci right 4.450889e-02	k: 2135	n:50000
ETV3   50000 perm   10 sec   (4983 perm/sec)   p_kst 4.270000e-02   p_cons 2.260000e-03   p_joint 7.280000e-03

Joint ci ratio: 1.999235e-01	ci left: 5.730050e-03	ci right 7.018398e-03	k: 381	n:60000
Cons ci ratio: 3.321019e-01	ci left: 1.932621e-03	ci right 2.716762e-03	k: 138	n:60000
KS ci ratio: 7.619384e-02	ci left: 4.063790e-02	ci right 4.387323e-02	k: 2534	n:60000
ETV3   60000 perm   12 sec   (4870 perm/sec)   p_kst 4.223333e-02   p_cons 2.300000e-03   p_joint 6.350000e-03

Joint ci ratio: 1.768292e-01	ci left: 6.354766e-03	ci right 7.600915e-03	k: 487	n:70000
Cons ci ratio: 3.076255e-01	ci left: 1.958765e-03	ci right 2.683477e-03	k: 161	n:70000
KS ci ratio: 7.047347e-02	ci left: 4.083488e-02	ci right 4.383178e-02	k: 2962	n:70000
ETV3   70000 perm   15 sec   (4776 perm/sec)   p_kst 4.231429e-02   p_cons 2.300000e-03   p_joint 6.957143e-03

Joint ci ratio: 1.633154e-01	ci left: 6.565841e-03	ci right 7.745325e-03	k: 571	n:80000
Cons ci ratio: 2.910397e-01	ci left: 1.933593e-03	ci right 2.603322e-03	k: 180	n:80000
KS ci ratio: 6.549181e-02	ci left: 4.145699e-02	ci right 4.427628e-02	k: 3428	n:80000
ETV3   80000 perm   17 sec   (4686 perm/sec)   p_kst 4.285000e-02   p_cons 2.250000e-03   p_joint 7.137500e-03

Joint ci ratio: 1.547646e-01	ci left: 6.529786e-03	ci right 7.635676e-03	k: 636	n:90000
Cons ci ratio: 2.754990e-01	ci left: 1.935518e-03	ci right 2.563920e-03	k: 201	n:90000
KS ci ratio: 6.192788e-02	ci left: 4.130075e-02	ci right 4.395106e-02	k: 3835	n:90000
ETV3   90000 perm   20 sec   (4600 perm/sec)   p_kst 4.261111e-02   p_cons 2.233333e-03   p_joint 7.066667e-03

Joint ci ratio: 1.458686e-01	ci left: 6.646765e-03	ci right 7.702123e-03	k: 716	n:100000
Cons ci ratio: 2.639942e-01	ci left: 1.909795e-03	ci right 2.499674e-03	k: 219	n:100000
KS ci ratio: 5.852959e-02	ci left: 4.167209e-02	ci right 4.419451e-02	k: 4292	n:100000
ETV3   100000 perm   22 sec   (4518 perm/sec)   p_kst 4.292000e-02   p_cons 2.190000e-03   p_joint 7.160000e-03

Joint ci ratio: 1.391425e-01	ci left: 6.664967e-03	ci right 7.670372e-03	k: 787	n:110000
Cons ci ratio: 2.461636e-01	ci left: 2.017033e-03	ci right 2.591530e-03	k: 252	n:110000
KS ci ratio: 5.608747e-02	ci left: 4.132439e-02	ci right 4.371799e-02	k: 4676	n:110000
ETV3   110000 perm   25 sec   (4440 perm/sec)   p_kst 4.250909e-02   p_cons 2.290909e-03   p_joint 7.154545e-03

Joint ci ratio: 1.328796e-01	ci left: 6.721355e-03	ci right 7.686024e-03	k: 863	n:120000
Cons ci ratio: 2.319239e-01	ci left: 2.099665e-03	ci right 2.658151e-03	k: 284	n:120000
KS ci ratio: 5.376675e-02	ci left: 4.127506e-02	ci right 4.356379e-02	k: 5089	n:120000
ETV3   120000 perm   27 sec   (4366 perm/sec)   p_kst 4.240833e-02   p_cons 2.366667e-03   p_joint 7.191667e-03

Joint ci ratio: 1.272564e-01	ci left: 6.784824e-03	ci right 7.714283e-03	k: 941	n:130000
Cons ci ratio: 2.205984e-01	ci left: 2.155856e-03	ci right 2.697489e-03	k: 314	n:130000
KS ci ratio: 5.180067e-02	ci left: 4.109831e-02	ci right 4.329140e-02	k: 5484	n:130000
ETV3   130000 perm   30 sec   (4280 perm/sec)   p_kst 4.218462e-02   p_cons 2.415385e-03   p_joint 7.238462e-03

Joint ci ratio: 1.233931e-01	ci left: 6.715315e-03	ci right 7.605281e-03	k: 1001	n:140000
Cons ci ratio: 2.139153e-01	ci left: 2.136949e-03	ci right 2.655433e-03	k: 334	n:140000
KS ci ratio: 4.996464e-02	ci left: 4.106105e-02	ci right 4.317225e-02	k: 5895	n:140000
ETV3   140000 perm   33 sec   (4210 perm/sec)   p_kst 4.210714e-02   p_cons 2.385714e-03   p_joint 7.150000e-03

Joint ci ratio: 1.195783e-01	ci left: 6.687787e-03	ci right 7.544765e-03	k: 1066	n:150000
Cons ci ratio: 2.075122e-01	ci left: 2.127098e-03	ci right 2.625782e-03	k: 355	n:150000
KS ci ratio: 4.823913e-02	ci left: 4.114858e-02	ci right 4.318917e-02	k: 6324	n:150000
ETV3   150000 perm   36 sec   (4144 perm/sec)   p_kst 4.216000e-02   p_cons 2.366667e-03   p_joint 7.106667e-03

Joint ci ratio: 1.162001e-01	ci left: 6.651932e-03	ci right 7.478581e-03	k: 1129	n:160000
Cons ci ratio: 2.019203e-01	ci left: 2.112746e-03	ci right 2.593071e-03	k: 375	n:160000
KS ci ratio: 4.662324e-02	ci left: 4.132514e-02	ci right 4.330399e-02	k: 6769	n:160000
ETV3   160000 perm   39 sec   (4076 perm/sec)   p_kst 4.230625e-02   p_cons 2.343750e-03   p_joint 7.056250e-03

Joint ci ratio: 1.125244e-01	ci left: 6.689207e-03	ci right 7.492447e-03	k: 1204	n:170000
Cons ci ratio: 1.972572e-01	ci left: 2.089056e-03	ci right 2.551708e-03	k: 393	n:170000
KS ci ratio: 4.524802e-02	ci left: 4.132482e-02	ci right 4.324377e-02	k: 7187	n:170000
ETV3   170000 perm   42 sec   (4010 perm/sec)   p_kst 4.227647e-02   p_cons 2.311765e-03   p_joint 7.082353e-03

Joint ci ratio: 1.092197e-01	ci left: 6.717300e-03	ci right 7.498701e-03	k: 1278	n:180000
Cons ci ratio: 1.901472e-01	ci left: 2.131587e-03	ci right 2.584678e-03	k: 423	n:180000
KS ci ratio: 4.396662e-02	ci left: 4.136379e-02	ci right 4.322877e-02	k: 7612	n:180000
ETV3   180000 perm   46 sec   (3944 perm/sec)   p_kst 4.228889e-02   p_cons 2.350000e-03   p_joint 7.100000e-03

Joint ci ratio: 1.035995e-01	ci left: 7.091316e-03	ci right 7.871193e-03	k: 1420	n:190000
Cons ci ratio: 1.853989e-01	ci left: 2.129745e-03	ci right 2.569869e-03	k: 445	n:190000
KS ci ratio: 4.272447e-02	ci left: 4.151916e-02	ci right 4.333694e-02	k: 8060	n:190000
ETV3   190000 perm   49 sec   (3879 perm/sec)   p_kst 4.242105e-02   p_cons 2.342105e-03   p_joint 7.473684e-03

Joint ci ratio: 1.013453e-01	ci left: 7.048541e-03	ci right 7.805841e-03	k: 1484	n:200000
Cons ci ratio: 1.821637e-01	ci left: 2.099575e-03	ci right 2.525056e-03	k: 461	n:200000
KS ci ratio: 4.169468e-02	ci left: 4.144184e-02	ci right 4.321146e-02	k: 8464	n:200000
ETV3   200000 perm   53 sec   (3804 perm/sec)   p_kst 4.232000e-02   p_cons 2.305000e-03   p_joint 7.420000e-03

Joint ci ratio: 9.862444e-02	ci left: 7.098260e-03	ci right 7.839243e-03	k: 1567	n:210000
Cons ci ratio: 1.766998e-01	ci left: 2.131492e-03	ci right 2.549101e-03	k: 490	n:210000
KS ci ratio: 4.068567e-02	ci left: 4.147139e-02	ci right 4.319841e-02	k: 8889	n:210000
ETV3   210000 perm   56 sec   (3742 perm/sec)   p_kst 4.232857e-02   p_cons 2.333333e-03   p_joint 7.461905e-03

Joint ci ratio: 9.608229e-02	ci left: 7.148142e-03	ci right 7.874015e-03	k: 1651	n:220000
Cons ci ratio: 1.727013e-01	ci left: 2.134581e-03	ci right 2.542345e-03	k: 513	n:220000
KS ci ratio: 3.978669e-02	ci left: 4.141769e-02	ci right 4.310349e-02	k: 9296	n:220000
ETV3   220000 perm   60 sec   (3669 perm/sec)   p_kst 4.225455e-02   p_cons 2.331818e-03   p_joint 7.504545e-03

Joint ci ratio: 9.665956e-02	ci left: 6.756670e-03	ci right 7.447144e-03	k: 1632	n:230000
Cons ci ratio: 1.688051e-01	ci left: 2.141662e-03	ci right 2.540610e-03	k: 537	n:230000
KS ci ratio: 3.897624e-02	ci left: 4.130444e-02	ci right 4.295061e-02	k: 9688	n:230000
ETV3   230000 perm   64 sec   (3612 perm/sec)   p_kst 4.212174e-02   p_cons 2.334783e-03   p_joint 7.095652e-03

Joint ci ratio: 9.448489e-02	ci left: 6.784244e-03	ci right 7.461075e-03	k: 1708	n:240000
Cons ci ratio: 1.654565e-01	ci left: 2.140259e-03	ci right 2.530249e-03	k: 559	n:240000
KS ci ratio: 3.810499e-02	ci left: 4.142802e-02	ci right 4.304140e-02	k: 10135	n:240000
ETV3   240000 perm   67 sec   (3561 perm/sec)   p_kst 4.222917e-02   p_cons 2.329167e-03   p_joint 7.116667e-03

Joint ci ratio: 1.266055e-01	ci left: 3.578081e-03	ci right 4.065533e-03	k: 954	n:250000
Cons ci ratio: 1.624396e-01	ci left: 2.135201e-03	ci right 2.516483e-03	k: 580	n:250000
KS ci ratio: 3.728414e-02	ci left: 4.155398e-02	ci right 4.313665e-02	k: 10585	n:250000
ETV3   250000 perm   71 sec   (3513 perm/sec)   p_kst 4.234000e-02   p_cons 2.320000e-03   p_joint 3.816000e-03

Joint ci ratio: 1.239092e-01	ci left: 3.596942e-03	ci right 4.075761e-03	k: 996	n:260000
Cons ci ratio: 1.593169e-01	ci left: 2.137979e-03	ci right 2.511715e-03	k: 603	n:260000
KS ci ratio: 3.655740e-02	ci left: 4.157528e-02	ci right 4.312725e-02	k: 11010	n:260000
ETV3   260000 perm   75 sec   (3466 perm/sec)   p_kst 4.234615e-02   p_cons 2.319231e-03   p_joint 3.830769e-03

Joint ci ratio: 1.216133e-01	ci left: 3.600141e-03	ci right 4.069867e-03	k: 1034	n:270000
Cons ci ratio: 1.567439e-01	ci left: 2.129938e-03	ci right 2.495691e-03	k: 623	n:270000
KS ci ratio: 3.589616e-02	ci left: 4.154020e-02	ci right 4.306224e-02	k: 11420	n:270000
ETV3   270000 perm   79 sec   (3423 perm/sec)   p_kst 4.229630e-02   p_cons 2.307407e-03   p_joint 3.829630e-03

Joint ci ratio: 8.789510e-02	ci left: 6.743421e-03	ci right 7.366848e-03	k: 1974	n:280000
Cons ci ratio: 1.547741e-01	ci left: 2.108783e-03	ci right 2.465930e-03	k: 639	n:280000
KS ci ratio: 3.524467e-02	ci left: 4.156453e-02	ci right 4.305925e-02	k: 11846	n:280000
ETV3   280000 perm   83 sec   (3380 perm/sec)   p_kst 4.230714e-02   p_cons 2.282143e-03   p_joint 7.050000e-03

Joint ci ratio: 1.181838e-01	ci left: 3.555888e-03	ci right 4.005842e-03	k: 1095	n:290000
Cons ci ratio: 1.525277e-01	ci left: 2.099064e-03	ci right 2.448933e-03	k: 658	n:290000
KS ci ratio: 3.467316e-02	ci left: 4.148140e-02	ci right 4.294846e-02	k: 12241	n:290000
ETV3   290000 perm   87 sec   (3339 perm/sec)   p_kst 4.221034e-02   p_cons 2.268966e-03   p_joint 3.775862e-03

Joint ci ratio: 1.169134e-01	ci left: 3.515002e-03	ci right 3.954671e-03	k: 1119	n:300000
Cons ci ratio: 1.503762e-01	ci left: 2.090027e-03	ci right 2.433035e-03	k: 677	n:300000
KS ci ratio: 3.410604e-02	ci left: 4.145689e-02	ci right 4.289864e-02	k: 12652	n:300000
ETV3   300000 perm   91 sec   (3298 perm/sec)   p_kst 4.217333e-02   p_cons 2.256667e-03   p_joint 3.730000e-03

Joint ci ratio: 1.153797e-01	ci left: 3.495575e-03	ci right 3.926688e-03	k: 1149	n:310000
Cons ci ratio: 1.483133e-01	ci left: 2.081606e-03	ci right 2.418129e-03	k: 696	n:310000
KS ci ratio: 3.356855e-02	ci left: 4.142775e-02	ci right 4.284534e-02	k: 13061	n:310000
ETV3   310000 perm   95 sec   (3258 perm/sec)   p_kst 4.213226e-02   p_cons 2.245161e-03   p_joint 3.706452e-03

Joint ci ratio: 1.136634e-01	ci left: 3.492580e-03	ci right 3.916486e-03	k: 1184	n:320000
Cons ci ratio: 1.465383e-01	ci left: 2.067720e-03	ci right 2.397648e-03	k: 713	n:320000
KS ci ratio: 3.302755e-02	ci left: 4.146881e-02	ci right 4.286450e-02	k: 13492	n:320000
ETV3   320000 perm   99 sec   (3218 perm/sec)   p_kst 4.216250e-02   p_cons 2.228125e-03   p_joint 3.700000e-03

Joint ci ratio: 1.115180e-01	ci left: 3.522216e-03	ci right 3.941119e-03	k: 1230	n:330000
Cons ci ratio: 1.443317e-01	ci left: 2.069303e-03	ci right 2.394082e-03	k: 735	n:330000
KS ci ratio: 3.245960e-02	ci left: 4.163684e-02	ci right 4.301364e-02	k: 13966	n:330000
ETV3   330000 perm   104 sec   (3181 perm/sec)   p_kst 4.232121e-02   p_cons 2.227273e-03   p_joint 3.727273e-03

Joint ci ratio: 1.210762e-01	ci left: 2.887390e-03	ci right 3.262335e-03	k: 1044	n:340000
Cons ci ratio: 1.424102e-01	ci left: 2.065154e-03	ci right 2.384601e-03	k: 755	n:340000
KS ci ratio: 3.202548e-02	ci left: 4.152958e-02	ci right 4.288412e-02	k: 14349	n:340000
ETV3   340000 perm   108 sec   (3144 perm/sec)   p_kst 4.220294e-02   p_cons 2.220588e-03   p_joint 3.070588e-03

Joint ci ratio: 1.082685e-01	ci left: 3.529343e-03	ci right 3.936084e-03	k: 1305	n:350000
Cons ci ratio: 1.401118e-01	ci left: 2.075055e-03	ci right 2.390420e-03	k: 780	n:350000
KS ci ratio: 3.156361e-02	ci left: 4.154198e-02	ci right 4.287704e-02	k: 14772	n:350000
ETV3   350000 perm   113 sec   (3102 perm/sec)   p_kst 4.220571e-02   p_cons 2.228571e-03   p_joint 3.728571e-03

Joint ci ratio: 1.177435e-01	ci left: 2.888669e-03	ci right 3.252736e-03	k: 1104	n:360000
Cons ci ratio: 1.381792e-01	ci left: 2.076398e-03	ci right 2.387257e-03	k: 802	n:360000
KS ci ratio: 3.110941e-02	ci left: 4.158416e-02	ci right 4.290100e-02	k: 15206	n:360000
ETV3   360000 perm   118 sec   (3041 perm/sec)   p_kst 4.223889e-02   p_cons 2.227778e-03   p_joint 3.066667e-03

Joint ci ratio: 1.167980e-01	ci left: 2.857816e-03	ci right 3.214902e-03	k: 1122	n:370000
Cons ci ratio: 1.372445e-01	ci left: 2.048983e-03	ci right 2.353492e-03	k: 813	n:370000
KS ci ratio: 3.072146e-02	ci left: 4.150078e-02	ci right 4.279830e-02	k: 15594	n:370000
ETV3   370000 perm   123 sec   (3004 perm/sec)   p_kst 4.214595e-02   p_cons 2.197297e-03   p_joint 3.032432e-03

Joint ci ratio: 1.045731e-01	ci left: 3.491493e-03	ci right 3.879293e-03	k: 1399	n:380000
Cons ci ratio: 1.358343e-01	ci left: 2.038270e-03	ci right 2.337823e-03	k: 830	n:380000
KS ci ratio: 3.032194e-02	ci left: 4.148981e-02	ci right 4.276982e-02	k: 16008	n:380000
ETV3   380000 perm   128 sec   (2971 perm/sec)   p_kst 4.212632e-02   p_cons 2.184211e-03   p_joint 3.681579e-03

Joint ci ratio: 1.031820e-01	ci left: 3.496873e-03	ci right 3.879790e-03	k: 1437	n:390000
Cons ci ratio: 1.340712e-01	ci left: 2.040513e-03	ci right 2.336192e-03	k: 852	n:390000
KS ci ratio: 2.992619e-02	ci left: 4.151005e-02	ci right 4.277369e-02	k: 16434	n:390000
ETV3   390000 perm   133 sec   (2939 perm/sec)   p_kst 4.213846e-02   p_cons 2.184615e-03   p_joint 3.684615e-03

Joint ci ratio: 1.020534e-01	ci left: 3.487397e-03	ci right 3.864849e-03	k: 1469	n:400000
Cons ci ratio: 1.327557e-01	ci left: 2.030581e-03	ci right 2.321706e-03	k: 869	n:400000
KS ci ratio: 2.953367e-02	ci left: 4.156166e-02	ci right 4.280999e-02	k: 16873	n:400000
ETV3   400000 perm   138 sec   (2907 perm/sec)   p_kst 4.218250e-02   p_cons 2.172500e-03   p_joint 3.672500e-03

Joint ci ratio: 1.008599e-01	ci left: 3.485538e-03	ci right 3.858116e-03	k: 1504	n:410000
Cons ci ratio: 1.317015e-01	ci left: 2.014070e-03	ci right 2.300356e-03	k: 883	n:410000
KS ci ratio: 2.919053e-02	ci left: 4.151639e-02	ci right 4.274863e-02	k: 17273	n:410000
ETV3   410000 perm   143 sec   (2875 perm/sec)   p_kst 4.212927e-02   p_cons 2.153659e-03   p_joint 3.668293e-03

Joint ci ratio: 9.983765e-02	ci left: 3.474505e-03	ci right 3.841919e-03	k: 1535	n:420000
Cons ci ratio: 1.303090e-01	ci left: 2.009871e-03	ci right 2.292306e-03	k: 902	n:420000
KS ci ratio: 2.883610e-02	ci left: 4.153720e-02	ci right 4.275484e-02	k: 17700	n:420000
ETV3   420000 perm   148 sec   (2845 perm/sec)   p_kst 4.214286e-02   p_cons 2.147619e-03   p_joint 3.654762e-03

Joint ci ratio: 9.875099e-02	ci left: 3.470808e-03	ci right 3.833605e-03	k: 1569	n:430000
Cons ci ratio: 1.288198e-01	ci left: 2.010384e-03	ci right 2.289416e-03	k: 923	n:430000
KS ci ratio: 2.851070e-02	ci left: 4.151094e-02	ci right 4.271385e-02	k: 18107	n:430000
ETV3   430000 perm   153 sec   (2814 perm/sec)   p_kst 4.210930e-02   p_cons 2.146512e-03   p_joint 3.648837e-03

Joint ci ratio: 1.073659e-01	ci left: 2.858242e-03	ci right 3.184720e-03	k: 1328	n:440000
Cons ci ratio: 1.272456e-01	ci left: 2.015292e-03	ci right 2.291329e-03	k: 946	n:440000
KS ci ratio: 2.818177e-02	ci left: 4.152657e-02	ci right 4.271583e-02	k: 18532	n:440000
ETV3   440000 perm   158 sec   (2783 perm/sec)   p_kst 4.211818e-02   p_cons 2.150000e-03   p_joint 3.018182e-03

Joint ci ratio: 1.063313e-01	ci left: 2.850959e-03	ci right 3.173270e-03	k: 1354	n:450000
Cons ci ratio: 1.255981e-01	ci left: 2.024307e-03	ci right 2.297722e-03	k: 971	n:450000
KS ci ratio: 2.784404e-02	ci left: 4.159898e-02	ci right 4.277581e-02	k: 18983	n:450000
ETV3   450000 perm   163 sec   (2754 perm/sec)   p_kst 4.218444e-02   p_cons 2.157778e-03   p_joint 3.008889e-03

Joint ci ratio: 1.052497e-01	ci left: 2.848240e-03	ci right 3.166766e-03	k: 1382	n:460000
Cons ci ratio: 1.242003e-01	ci left: 2.026633e-03	ci right 2.297091e-03	k: 993	n:460000
KS ci ratio: 2.752408e-02	ci left: 4.165105e-02	ci right 4.281559e-02	k: 19426	n:460000
ETV3   460000 perm   169 sec   (2727 perm/sec)   p_kst 4.223043e-02   p_cons 2.158696e-03   p_joint 3.004348e-03

Joint ci ratio: 1.043860e-01	ci left: 2.835292e-03	ci right 3.149608e-03	k: 1405	n:470000
Cons ci ratio: 1.229088e-01	ci left: 2.026813e-03	ci right 2.294277e-03	k: 1014	n:470000
KS ci ratio: 2.726149e-02	ci left: 4.156358e-02	ci right 4.271442e-02	k: 19804	n:470000
ETV3   470000 perm   174 sec   (2699 perm/sec)   p_kst 4.213617e-02   p_cons 2.157447e-03   p_joint 2.989362e-03

Joint ci ratio: 1.034345e-01	ci left: 2.828982e-03	ci right 3.139566e-03	k: 1431	n:480000
Cons ci ratio: 1.221899e-01	ci left: 2.008820e-03	ci right 2.272247e-03	k: 1026	n:480000
KS ci ratio: 2.696724e-02	ci left: 4.159572e-02	ci right 4.273482e-02	k: 20238	n:480000
ETV3   480000 perm   180 sec   (2672 perm/sec)   p_kst 4.216250e-02   p_cons 2.137500e-03   p_joint 2.981250e-03

Joint ci ratio: 9.295378e-02	ci left: 3.448181e-03	ci right 3.786302e-03	k: 1771	n:490000
Cons ci ratio: 1.209017e-01	ci left: 2.011357e-03	ci right 2.272137e-03	k: 1048	n:490000
KS ci ratio: 2.668030e-02	ci left: 4.163269e-02	ci right 4.276049e-02	k: 20675	n:490000
ETV3   490000 perm   185 sec   (2646 perm/sec)   p_kst 4.219388e-02   p_cons 2.138776e-03   p_joint 3.614286e-03

Joint ci ratio: 9.199819e-02	ci left: 3.451506e-03	ci right 3.786287e-03	k: 1808	n:500000
Cons ci ratio: 1.196535e-01	ci left: 2.013806e-03	ci right 2.272018e-03	k: 1070	n:500000
KS ci ratio: 2.643044e-02	ci left: 4.158279e-02	ci right 4.269853e-02	k: 21069	n:500000
ETV3   500000 perm   191 sec   (2619 perm/sec)   p_kst 4.213800e-02   p_cons 2.140000e-03   p_joint 3.616000e-03

Joint ci ratio: 9.107148e-02	ci left: 3.454718e-03	ci right 3.786255e-03	k: 1845	n:510000
Cons ci ratio: 1.185518e-01	ci left: 2.012367e-03	ci right 2.267852e-03	k: 1090	n:510000
KS ci ratio: 2.615759e-02	ci left: 4.162647e-02	ci right 4.273168e-02	k: 21510	n:510000
ETV3   510000 perm   197 sec   (2594 perm/sec)   p_kst 4.217647e-02   p_cons 2.137255e-03   p_joint 3.617647e-03

Joint ci ratio: 9.024439e-02	ci left: 3.452183e-03	ci right 3.780309e-03	k: 1879	n:520000
Cons ci ratio: 1.174271e-01	ci left: 2.012860e-03	ci right 2.265815e-03	k: 1111	n:520000
KS ci ratio: 2.590719e-02	ci left: 4.162457e-02	ci right 4.271900e-02	k: 21928	n:520000
ETV3   520000 perm   202 sec   (2568 perm/sec)   p_kst 4.216923e-02   p_cons 2.136538e-03   p_joint 3.613462e-03

Joint ci ratio: 8.913615e-02	ci left: 3.473739e-03	ci right 3.799648e-03	k: 1926	n:530000
Cons ci ratio: 1.159244e-01	ci left: 2.028003e-03	ci right 2.279376e-03	k: 1140	n:530000
KS ci ratio: 2.563630e-02	ci left: 4.170906e-02	ci right 4.279407e-02	k: 22392	n:530000
ETV3   530000 perm   208 sec   (2543 perm/sec)   p_kst 4.224906e-02   p_cons 2.150943e-03   p_joint 3.633962e-03

Joint ci ratio: 8.831505e-02	ci left: 3.474598e-03	ci right 3.797430e-03	k: 1962	n:540000
Cons ci ratio: 1.149714e-01	ci left: 2.024616e-03	ci right 2.273366e-03	k: 1159	n:540000
KS ci ratio: 2.538824e-02	ci left: 4.174445e-02	ci right 4.281972e-02	k: 22831	n:540000
ETV3   540000 perm   214 sec   (2519 perm/sec)   p_kst 4.227963e-02   p_cons 2.146296e-03   p_joint 3.633333e-03

Joint ci ratio: 8.740659e-02	ci left: 3.484332e-03	ci right 3.804568e-03	k: 2003	n:550000
Cons ci ratio: 1.138481e-01	ci left: 2.028426e-03	ci right 2.275047e-03	k: 1182	n:550000
KS ci ratio: 2.517720e-02	ci left: 4.168283e-02	ci right 4.274745e-02	k: 23217	n:550000
ETV3   550000 perm   220 sec   (2495 perm/sec)   p_kst 4.221273e-02   p_cons 2.149091e-03   p_joint 3.641818e-03

Joint ci ratio: 8.676010e-02	ci left: 3.474516e-03	ci right 3.791368e-03	k: 2033	n:560000
Cons ci ratio: 1.129450e-01	ci left: 2.025170e-03	ci right 2.269312e-03	k: 1201	n:560000
KS ci ratio: 2.493771e-02	ci left: 4.173172e-02	ci right 4.278731e-02	k: 23664	n:560000
ETV3   560000 perm   227 sec   (2469 perm/sec)   p_kst 4.225714e-02   p_cons 2.144643e-03   p_joint 3.630357e-03

Joint ci ratio: 8.604411e-02	ci left: 3.471919e-03	ci right 3.785791e-03	k: 2067	n:570000
Cons ci ratio: 1.119711e-01	ci left: 2.025447e-03	ci right 2.267377e-03	k: 1222	n:570000
KS ci ratio: 2.472152e-02	ci left: 4.172487e-02	ci right 4.277101e-02	k: 24080	n:570000
ETV3   570000 perm   233 sec   (2446 perm/sec)   p_kst 4.224561e-02   p_cons 2.143860e-03   p_joint 3.626316e-03

Joint ci ratio: 8.542718e-02	ci left: 3.462673e-03	ci right 3.773352e-03	k: 2097	n:580000
Cons ci ratio: 1.111565e-01	ci left: 2.020694e-03	ci right 2.260185e-03	k: 1240	n:580000
KS ci ratio: 2.450094e-02	ci left: 4.175087e-02	ci right 4.278819e-02	k: 24515	n:580000
ETV3   580000 perm   239 sec   (2422 perm/sec)   p_kst 4.226724e-02   p_cons 2.137931e-03   p_joint 3.615517e-03

Joint ci ratio: 8.490344e-02	ci left: 3.447112e-03	ci right 3.754404e-03	k: 2123	n:590000
Cons ci ratio: 1.104913e-01	ci left: 2.011163e-03	ci right 2.248006e-03	k: 1255	n:590000
KS ci ratio: 2.431211e-02	ci left: 4.169009e-02	ci right 4.271780e-02	k: 24899	n:590000
ETV3   590000 perm   246 sec   (2400 perm/sec)   p_kst 4.220169e-02   p_cons 2.127119e-03   p_joint 3.598305e-03

Joint ci ratio: 8.421251e-02	ci left: 3.446760e-03	ci right 3.751398e-03	k: 2158	n:600000
Cons ci ratio: 1.094932e-01	ci left: 2.014923e-03	ci right 2.249926e-03	k: 1278	n:600000
KS ci ratio: 2.412012e-02	ci left: 4.165622e-02	ci right 4.267488e-02	k: 25298	n:600000
ETV3   600000 perm   252 sec   (2378 perm/sec)   p_kst 4.216333e-02   p_cons 2.130000e-03   p_joint 3.596667e-03

Joint ci ratio: 8.346185e-02	ci left: 3.452850e-03	ci right 3.755173e-03	k: 2197	n:610000
Cons ci ratio: 1.086052e-01	ci left: 2.015378e-03	ci right 2.248407e-03	k: 1299	n:610000
KS ci ratio: 2.392774e-02	ci left: 4.163979e-02	ci right 4.264981e-02	k: 25707	n:610000
ETV3   610000 perm   259 sec   (2356 perm/sec)   p_kst 4.214262e-02   p_cons 2.129508e-03   p_joint 3.601639e-03

Joint ci ratio: 8.271236e-02	ci left: 3.460335e-03	ci right 3.760462e-03	k: 2237	n:620000
Cons ci ratio: 1.077386e-01	ci left: 2.015827e-03	ci right 2.246929e-03	k: 1320	n:620000
KS ci ratio: 2.373183e-02	ci left: 4.165118e-02	ci right 4.265310e-02	k: 26133	n:620000
ETV3   620000 perm   266 sec   (2334 perm/sec)   p_kst 4.215000e-02   p_cons 2.129032e-03   p_joint 3.608065e-03

Joint ci ratio: 8.210942e-02	ci left: 3.456710e-03	ci right 3.754233e-03	k: 2270	n:630000
Cons ci ratio: 1.069722e-01	ci left: 2.013178e-03	ci right 2.242232e-03	k: 1339	n:630000
KS ci ratio: 2.355315e-02	ci left: 4.161964e-02	ci right 4.261315e-02	k: 26532	n:630000
ETV3   630000 perm   272 sec   (2314 perm/sec)   p_kst 4.211429e-02   p_cons 2.125397e-03   p_joint 3.603175e-03

Joint ci ratio: 8.127203e-02	ci left: 3.474638e-03	ci right 3.770509e-03	k: 2317	n:640000
Cons ci ratio: 1.058712e-01	ci left: 2.024309e-03	ci right 2.252111e-03	k: 1367	n:640000
KS ci ratio: 2.335583e-02	ci left: 4.166679e-02	ci right 4.265299e-02	k: 26981	n:640000
ETV3   640000 perm   279 sec   (2293 perm/sec)   p_kst 4.215781e-02   p_cons 2.135937e-03   p_joint 3.620312e-03

Joint ci ratio: 8.052812e-02	ci left: 3.485998e-03	ci right 3.779992e-03	k: 2360	n:650000
Cons ci ratio: 1.048789e-01	ci left: 2.032112e-03	ci right 2.258516e-03	k: 1393	n:650000
KS ci ratio: 2.318457e-02	ci left: 4.163909e-02	ci right 4.261731e-02	k: 27382	n:650000
ETV3   650000 perm   286 sec   (2273 perm/sec)   p_kst 4.212615e-02   p_cons 2.143077e-03   p_joint 3.630769e-03

Joint ci ratio: 7.975434e-02	ci left: 3.501481e-03	ci right 3.793811e-03	k: 2406	n:660000
Cons ci ratio: 1.038407e-01	ci left: 2.042639e-03	ci right 2.267827e-03	k: 1421	n:660000
KS ci ratio: 2.299845e-02	ci left: 4.167704e-02	ci right 4.264819e-02	k: 27826	n:660000
ETV3   660000 perm   293 sec   (2253 perm/sec)   p_kst 4.216061e-02   p_cons 2.153030e-03   p_joint 3.645455e-03

Joint ci ratio: 7.911582e-02	ci left: 3.506273e-03	ci right 3.796552e-03	k: 2445	n:670000
Cons ci ratio: 1.031540e-01	ci left: 2.039776e-03	ci right 2.263071e-03	k: 1440	n:670000
KS ci ratio: 2.283023e-02	ci left: 4.166640e-02	ci right 4.263010e-02	k: 28238	n:670000
ETV3   670000 perm   300 sec   (2234 perm/sec)   p_kst 4.214627e-02   p_cons 2.149254e-03   p_joint 3.649254e-03

Joint ci ratio: 7.842906e-02	ci left: 3.516701e-03	ci right 3.805200e-03	k: 2488	n:680000
Cons ci ratio: 1.022704e-01	ci left: 2.045600e-03	ci right 2.267499e-03	k: 1465	n:680000
KS ci ratio: 2.265864e-02	ci left: 4.168095e-02	ci right 4.263766e-02	k: 28667	n:680000
ETV3   680000 perm   307 sec   (2215 perm/sec)   p_kst 4.215735e-02   p_cons 2.154412e-03   p_joint 3.658824e-03

Joint ci ratio: 7.800765e-02	ci left: 3.504098e-03	ci right 3.789949e-03	k: 2515	n:690000
Cons ci ratio: 1.016829e-01	ci left: 2.039963e-03	ci right 2.259903e-03	k: 1482	n:690000
KS ci ratio: 2.249933e-02	ci left: 4.166484e-02	ci right 4.261437e-02	k: 29075	n:690000
ETV3   690000 perm   314 sec   (2196 perm/sec)   p_kst 4.213768e-02   p_cons 2.147826e-03   p_joint 3.644928e-03

Joint ci ratio: 7.730365e-02	ci left: 3.518479e-03	ci right 3.802796e-03	k: 2561	n:700000
Cons ci ratio: 1.007025e-01	ci left: 2.051201e-03	ci right 2.270094e-03	k: 1511	n:700000
KS ci ratio: 2.235680e-02	ci left: 4.160091e-02	ci right 4.254289e-02	k: 29449	n:700000
ETV3   700000 perm   321 sec   (2178 perm/sec)   p_kst 4.207000e-02   p_cons 2.158571e-03   p_joint 3.658571e-03

Joint ci ratio: 7.684047e-02	ci left: 3.511743e-03	ci right 3.793739e-03	k: 2592	n:710000
Cons ci ratio: 1.001743e-01	ci left: 2.044280e-03	ci right 2.261223e-03	k: 1527	n:710000
KS ci ratio: 2.221733e-02	ci left: 4.153739e-02	ci right 4.247199e-02	k: 29822	n:710000
ETV3   710000 perm   329 sec   (2160 perm/sec)   p_kst 4.200282e-02   p_cons 2.150704e-03   p_joint 3.650704e-03

Joint ci ratio: 7.642938e-02	ci left: 3.501111e-03	ci right 3.780683e-03	k: 2620	n:720000
Cons ci ratio: 9.952517e-02	ci left: 2.042971e-03	ci right 2.258288e-03	k: 1547	n:720000
KS ci ratio: 2.207243e-02	ci left: 4.150466e-02	ci right 4.243236e-02	k: 30216	n:720000
ETV3   720000 perm   336 sec   (2142 perm/sec)   p_kst 4.196667e-02   p_cons 2.148611e-03   p_joint 3.638889e-03

Outputting figure to mutsig2_images.part000000000058/ETV3.2_1587_720000_0.041967_0.0021486_0.0036389.png
                gene_name: ETV3
               theta_stop: 0.100 
                    nperm: 720000 
                     p_ks: 0.042 
        ci_ks_bounds_left: 0.042 
       ci_ks_bounds_right: 0.042 
                   p_cons: 0.0021 
      ci_cons_bounds_left: 0.0020 
     ci_cons_bounds_right: 0.0023 
                  p_joint: 0.0036 
     ci_joint_bounds_left: 0.0035 
    ci_joint_bounds_right: 0.0038 

Current progress: 96 percent done.
EVC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.994172e-01	ci left: 3.348089e-02	ci right 4.099178e-02	k: 371	n:10000
Cons ci ratio: 2.794182e-01	ci left: 1.660112e-02	ci right 2.208394e-02	k: 192	n:10000
KS ci ratio: 2.135169e-02	ci left: 7.628386e-01	ci right 7.794031e-01	k: 7712	n:10000
EVC   10000 perm   2 sec   (5802 perm/sec)   p_kst 7.712000e-01   p_cons 1.920000e-02   p_joint 3.710000e-02

Joint ci ratio: 1.413087e-01	ci left: 3.442644e-02	ci right 3.970925e-02	k: 740	n:20000
Cons ci ratio: 1.892528e-01	ci left: 1.901003e-02	ci right 2.303092e-02	k: 419	n:20000
KS ci ratio: 1.517060e-02	ci left: 7.635993e-01	ci right 7.753223e-01	k: 15390	n:20000
EVC   20000 perm   4 sec   (5166 perm/sec)   p_kst 7.695000e-01   p_cons 2.095000e-02   p_joint 3.700000e-02

Joint ci ratio: 1.149767e-01	ci left: 3.515152e-02	ci right 3.947201e-02	k: 1118	n:30000
Cons ci ratio: 1.536558e-01	ci left: 1.959977e-02	ci right 2.289386e-02	k: 636	n:30000
KS ci ratio: 1.243561e-02	ci left: 7.632817e-01	ci right 7.728663e-01	k: 23043	n:30000
EVC   30000 perm   6 sec   (4920 perm/sec)   p_kst 7.681000e-01   p_cons 2.120000e-02   p_joint 3.726667e-02

Joint ci ratio: 9.722791e-02	ci left: 3.714825e-02	ci right 4.096904e-02	k: 1561	n:40000
Cons ci ratio: 1.334992e-01	ci left: 1.968976e-02	ci right 2.253036e-02	k: 843	n:40000
KS ci ratio: 1.078844e-02	ci left: 7.633033e-01	ci right 7.716078e-01	k: 30699	n:40000
EVC   40000 perm   8 sec   (4760 perm/sec)   p_kst 7.674750e-01   p_cons 2.107500e-02   p_joint 3.902500e-02

Joint ci ratio: 7.037933e-02	ci left: 5.636025e-02	ci right 6.049120e-02	k: 2920	n:50000
Cons ci ratio: 1.183218e-01	ci left: 2.020765e-02	ci right 2.276832e-02	k: 1073	n:50000
KS ci ratio: 9.611489e-03	ci left: 7.651595e-01	ci right 7.725693e-01	k: 38444	n:50000
EVC   50000 perm   11 sec   (4640 perm/sec)   p_kst 7.688800e-01   p_cons 2.146000e-02   p_joint 5.840000e-02

Joint ci ratio: 6.550914e-02	ci left: 5.446881e-02	ci right 5.817425e-02	k: 3378	n:60000
Cons ci ratio: 1.079613e-01	ci left: 2.033806e-02	ci right 2.267521e-02	k: 1289	n:60000
KS ci ratio: 8.785074e-03	ci left: 7.650368e-01	ci right 7.718039e-01	k: 46106	n:60000
EVC   60000 perm   13 sec   (4534 perm/sec)   p_kst 7.684333e-01   p_cons 2.148333e-02   p_joint 5.630000e-02

Joint ci ratio: 7.528556e-02	ci left: 3.588023e-02	ci right 3.870115e-02	k: 2609	n:70000
Cons ci ratio: 1.005692e-01	ci left: 2.017348e-02	ci right 2.232360e-02	k: 1486	n:70000
KS ci ratio: 8.145259e-03	ci left: 7.647687e-01	ci right 7.710376e-01	k: 53754	n:70000
EVC   70000 perm   16 sec   (4440 perm/sec)   p_kst 7.679143e-01   p_cons 2.122857e-02   p_joint 3.727143e-02

Joint ci ratio: 7.100457e-02	ci left: 3.539537e-02	ci right 3.801337e-02	k: 2935	n:80000
Cons ci ratio: 9.529658e-02	ci left: 1.972455e-02	ci right 2.171042e-02	k: 1656	n:80000
KS ci ratio: 7.621635e-03	ci left: 7.648582e-01	ci right 7.707224e-01	k: 61424	n:80000
EVC   80000 perm   18 sec   (4357 perm/sec)   p_kst 7.678000e-01   p_cons 2.070000e-02   p_joint 3.668750e-02

Outputting figure to mutsig2_images.part000000000058/EVC.2_3063_80000_0.7678_0.0207_0.036687.png
                gene_name: EVC
               theta_stop: 0.095 
                    nperm: 80000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.021 
      ci_cons_bounds_left: 0.020 
     ci_cons_bounds_right: 0.022 
                  p_joint: 0.037 
     ci_joint_bounds_left: 0.035 
    ci_joint_bounds_right: 0.038 

Current progress: 98 percent done.
EVX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.161134e-02	ci left: 5.962428e-01	ci right 6.154955e-01	k: 6059	n:10000
Cons ci ratio: 3.531015e-02	ci left: 5.421894e-01	ci right 5.617803e-01	k: 5520	n:10000
KS ci ratio: 3.858751e-02	ci left: 4.979503e-01	ci right 5.176452e-01	k: 5078	n:10000
EVX2   10000 perm   2 sec   (6382 perm/sec)   p_kst 5.078000e-01   p_cons 5.520000e-01   p_joint 6.059000e-01

Outputting figure to mutsig2_images.part000000000058/EVX2.2_1441_10000_0.5078_0.552_0.6059.png
                gene_name: EVX2
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000058
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 58 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1725>
Subject: Job 8004058: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1725>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000059> was used as the working directory.
Started at Sun Nov 11 15:05:37 2012
Results reported at Sun Nov 11 15:11:43 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000059.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000059.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 59  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000059.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    384.10 sec.
    Max Memory :      4789 MB
    Max Swap   :      7094 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
59
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 59
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 59: processing genes 5248 - 5338
Calculating significance of each gene.
Using projection method.
5248	EXO1	5.632412e-01
5249	EXOC1	2.853649e-01
5250	EXOC2	1
5251	EXOC3	5.185880e-01
5252	EXOC3L	9.428776e-01
5253	EXOC3L2	4.443098e-01
5254	EXOC4	1
5255	EXOC5	1
5256	EXOC6	8.918570e-01
5257	EXOC6B	8.531537e-01
5258	EXOC7	9.121289e-01
5259	EXOC8	7.004714e-01
5260	EXOG	5.060485e-01
5261	EXOSC1	5.664689e-01
5262	EXOSC10	6.915879e-01
5263	EXOSC2	1
5264	EXOSC3	1
5265	EXOSC4	1.396316e-01
5266	EXOSC5	4.735493e-01
5267	EXOSC7	1
5268	EXOSC8	1
5269	EXOSC9	7.241062e-01
5270	EXPH5	1
5271	EXT1	7.053619e-01
5272	EXT2	9.234833e-01
5273	EXTL1	8.276942e-01
5274	EXTL2	5.332269e-01
5275	EXTL3	9.584981e-01
5276	EYA1	2.974576e-01
5277	EYA2	7.980317e-01
5278	EYA3	6.843294e-01
5279	EYA4	8.698877e-01
5280	EZH1	2.649005e-01
5281	EZH2	9.236574e-01
5282	EZR	1
5283	F10	1
5284	F11	4.749761e-01
5285	F11R	6.689193e-01
5286	F12	8.861862e-01
5287	F13A1	8.789119e-01
5288	F13B	5.138803e-02
5289	F2	1
5290	F2R	3.879221e-01
5291	F2RL1	1.640103e-01
5292	F2RL2	5.754833e-01
5293	F2RL3	7.471349e-01
5294	F3	3.707003e-01
5295	F5	1.148146e-01
5296	F7	4.182629e-01
5297	F8	9.574553e-01
5298	F9	2.909521e-01
5299	FA2H	1
5300	FAAH	8.586997e-01
5301	FAAH2	2.951217e-01
5302	FABP1	1.495621e-01
5303	FABP12	2.461014e-01
5304	FABP2	1
5305	FABP3	1
5306	FABP4	1
5307	FABP5	1
5308	FABP6	2.469430e-01
5309	FABP7	3.714355e-01
5310	FABP9	1
5311	FADD	2.621698e-01
5312	FADS1	8.628674e-01
5313	FADS2	6.408706e-01
5314	FADS3	6.665247e-01
5315	FADS6	3.402418e-01
5316	FAF1	8.632798e-01
5317	FAF2	7.561680e-01
5318	FAH	7.330531e-01
5319	FAHD1	1
5320	FAHD2A	1
5321	FAHD2B	6.508016e-01
5322	FAIM	1
5323	FAIM2	5.740454e-01
5324	FAIM3	1
5325	FAM100A	1
5326	FAM100B	1
5327	FAM101A	1
5328	FAM101B	1.646429e-01
5329	FAM102A	6.140668e-01
5330	FAM102B	6.316625e-01
5331	FAM103A1	1
5332	FAM104A	1
5333	FAM104B	2.564370e-01
5334	FAM105A	1
5335	FAM105B	1
5336	FAM107A	5.154476e-01
5337	FAM107B	1.949927e-01
5338	FAM108A1	4.918649e-01
Done

Running MutSig 2:
Scatter job 59: processing genes 5248 - 5338
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
F5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.236025e-02	ci left: 7.459413e-01	ci right 7.629103e-01	k: 7545	n:10000
KS ci ratio: 2.106725e-02	ci left: 7.675975e-01	ci right 7.840416e-01	k: 7759	n:10000
F5   10000 perm   3 sec   (3649 perm/sec)   p_kst 7.759000e-01   p_cons 7.545000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000059/F5.19_6775_10000_0.7759_0.7545_1.png
                gene_name: F5
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 3 percent done.
F13B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.614875e-02	ci left: 2.512260e-01	ci right 2.685141e-01	k: 2598	n:10000
Cons ci ratio: 3.270107e-02	ci left: 5.798839e-01	ci right 5.992639e-01	k: 5896	n:10000
KS ci ratio: 8.412142e-02	ci left: 1.708424e-01	ci right 1.859454e-01	k: 1783	n:10000
F13B   10000 perm   2 sec   (5508 perm/sec)   p_kst 1.783000e-01   p_cons 5.896000e-01   p_joint 2.598000e-01

Outputting figure to mutsig2_images.part000000000059/F13B.12_2034_10000_0.1783_0.5896_0.2598.png
                gene_name: F13B
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 6 percent done.
EXO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.173503e-01	ci left: 2.806894e-02	ci right 3.500749e-02	k: 314	n:10000
Cons ci ratio: 1.814299e-02	ci left: 8.159855e-01	ci right 8.310256e-01	k: 8236	n:10000
KS ci ratio: 3.176417e-01	ci left: 1.261754e-02	ci right 1.747097e-02	k: 149	n:10000
EXO1   10000 perm   2 sec   (4424 perm/sec)   p_kst 1.490000e-02   p_cons 8.236000e-01   p_joint 3.140000e-02

Joint ci ratio: 1.394623e-01	ci left: 3.534423e-02	ci right 4.069115e-02	k: 759	n:20000
Cons ci ratio: 1.259841e-02	ci left: 8.235068e-01	ci right 8.339974e-01	k: 16576	n:20000
KS ci ratio: 2.123661e-01	ci left: 1.496956e-02	ci right 1.857290e-02	k: 334	n:20000
EXO1   20000 perm   5 sec   (4068 perm/sec)   p_kst 1.670000e-02   p_cons 8.288000e-01   p_joint 3.795000e-02

Joint ci ratio: 1.138195e-01	ci left: 3.586462e-02	ci right 4.022542e-02	k: 1140	n:30000
Cons ci ratio: 1.028159e-02	ci left: 8.246237e-01	ci right 8.331792e-01	k: 24868	n:30000
KS ci ratio: 1.704043e-01	ci left: 1.585478e-02	ci right 1.883974e-02	k: 519	n:30000
EXO1   30000 perm   8 sec   (3943 perm/sec)   p_kst 1.730000e-02   p_cons 8.289333e-01   p_joint 3.800000e-02

Joint ci ratio: 9.187949e-02	ci left: 4.152174e-02	ci right 4.554487e-02	k: 1740	n:40000
Cons ci ratio: 8.902748e-03	ci left: 8.252487e-01	ci right 8.326535e-01	k: 33159	n:40000
KS ci ratio: 1.468582e-01	ci left: 1.621352e-02	ci right 1.880720e-02	k: 699	n:40000
EXO1   40000 perm   10 sec   (3854 perm/sec)   p_kst 1.747500e-02   p_cons 8.289750e-01   p_joint 4.350000e-02

Joint ci ratio: 7.983483e-02	ci left: 4.416060e-02	ci right 4.785234e-02	k: 2299	n:50000
Cons ci ratio: 7.976161e-03	ci left: 8.251669e-01	ci right 8.317949e-01	k: 41425	n:50000
KS ci ratio: 1.301483e-01	ci left: 1.665909e-02	ci right 1.899737e-02	k: 890	n:50000
EXO1   50000 perm   13 sec   (3758 perm/sec)   p_kst 1.780000e-02   p_cons 8.285000e-01   p_joint 4.598000e-02

Joint ci ratio: 7.174197e-02	ci left: 4.569694e-02	ci right 4.911367e-02	k: 2843	n:60000
Cons ci ratio: 7.251704e-03	ci left: 8.266177e-01	ci right 8.326504e-01	k: 49779	n:60000
KS ci ratio: 1.196779e-01	ci left: 1.651438e-02	ci right 1.863265e-02	k: 1053	n:60000
EXO1   60000 perm   16 sec   (3690 perm/sec)   p_kst 1.755000e-02   p_cons 8.296500e-01   p_joint 4.738333e-02

Joint ci ratio: 7.222186e-02	ci left: 3.892526e-02	ci right 4.185585e-02	k: 2826	n:70000
Cons ci ratio: 6.719018e-03	ci left: 8.266214e-01	ci right 8.322084e-01	k: 58060	n:70000
KS ci ratio: 1.110611e-01	ci left: 1.651374e-02	ci right 1.846941e-02	k: 1223	n:70000
EXO1   70000 perm   19 sec   (3628 perm/sec)   p_kst 1.747143e-02   p_cons 8.294286e-01   p_joint 4.037143e-02

Joint ci ratio: 7.258482e-02	ci left: 3.389678e-02	ci right 3.646207e-02	k: 2813	n:80000
Cons ci ratio: 6.297903e-03	ci left: 8.262219e-01	ci right 8.314542e-01	k: 66308	n:80000
KS ci ratio: 1.044158e-01	ci left: 1.640777e-02	ci right 1.822748e-02	k: 1384	n:80000
EXO1   80000 perm   22 sec   (3573 perm/sec)   p_kst 1.730000e-02   p_cons 8.288500e-01   p_joint 3.516250e-02

Joint ci ratio: 6.634146e-02	ci left: 3.610416e-02	ci right 3.859244e-02	k: 3360	n:90000
Cons ci ratio: 5.924571e-03	ci left: 8.270045e-01	ci right 8.319298e-01	k: 74653	n:90000
KS ci ratio: 9.822395e-02	ci left: 1.653408e-02	ci right 1.825278e-02	k: 1564	n:90000
EXO1   90000 perm   26 sec   (3520 perm/sec)   p_kst 1.737778e-02   p_cons 8.294778e-01   p_joint 3.733333e-02

Outputting figure to mutsig2_images.part000000000059/EXO1.10_2593_90000_0.017378_0.82948_0.037333.png
                gene_name: EXO1
               theta_stop: 0.098 
                    nperm: 90000 
                     p_ks: 0.017 
        ci_ks_bounds_left: 0.017 
       ci_ks_bounds_right: 0.018 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.037 
     ci_joint_bounds_left: 0.036 
    ci_joint_bounds_right: 0.039 

Current progress: 9 percent done.
F8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.123610e-01	ci left: 1.023714e-01	ci right 1.146577e-01	k: 1084	n:10000
Cons ci ratio: 6.794962e-02	ci left: 2.411415e-01	ci right 2.582045e-01	k: 2496	n:10000
KS ci ratio: 1.247955e-01	ci left: 8.416945e-02	ci right 9.547082e-02	k: 897	n:10000
F8   10000 perm   2 sec   (4547 perm/sec)   p_kst 8.970000e-02   p_cons 2.496000e-01   p_joint 1.084000e-01

Joint ci ratio: 1.179902e-01	ci left: 4.920621e-02	ci right 5.542476e-02	k: 1045	n:20000
Cons ci ratio: 4.763488e-02	ci left: 2.468871e-01	ci right 2.589848e-01	k: 5058	n:20000
KS ci ratio: 8.996207e-02	ci left: 8.278644e-02	ci right 9.063420e-02	k: 1733	n:20000
F8   20000 perm   5 sec   (4139 perm/sec)   p_kst 8.665000e-02   p_cons 2.529000e-01   p_joint 5.225000e-02

Joint ci ratio: 7.465479e-02	ci left: 8.101590e-02	ci right 8.733157e-02	k: 2524	n:30000
Cons ci ratio: 3.877583e-02	ci left: 2.491478e-01	ci right 2.590332e-01	k: 7622	n:30000
KS ci ratio: 7.176037e-02	ci left: 8.721103e-02	ci right 9.373520e-02	k: 2713	n:30000
F8   30000 perm   8 sec   (3985 perm/sec)   p_kst 9.043333e-02   p_cons 2.540667e-01   p_joint 8.413333e-02

Outputting figure to mutsig2_images.part000000000059/F8.9_7188_30000_0.090433_0.25407_0.084133.png
                gene_name: F8
               theta_stop: 0.075 
                    nperm: 30000 
                     p_ks: 0.090 
        ci_ks_bounds_left: 0.087 
       ci_ks_bounds_right: 0.094 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.084 
     ci_joint_bounds_left: 0.081 
    ci_joint_bounds_right: 0.087 

Current progress: 12 percent done.
EXPH5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.123029e-01	ci left: 1.024689e-01	ci right 1.147601e-01	k: 1085	n:10000
Cons ci ratio: 2.716754e-02	ci left: 6.662236e-01	ci right 6.846741e-01	k: 6755	n:10000
KS ci ratio: 2.111979e-01	ci left: 2.977507e-02	ci right 3.690017e-02	k: 332	n:10000
EXPH5   10000 perm   2 sec   (5047 perm/sec)   p_kst 3.320000e-02   p_cons 6.755000e-01   p_joint 1.085000e-01

Joint ci ratio: 9.805090e-02	ci left: 7.036036e-02	ci right 7.766407e-02	k: 1479	n:20000
Cons ci ratio: 1.929872e-02	ci left: 6.669512e-01	ci right 6.799984e-01	k: 13470	n:20000
KS ci ratio: 1.507536e-01	ci left: 3.023012e-02	ci right 3.520695e-02	k: 653	n:20000
EXPH5   20000 perm   4 sec   (4509 perm/sec)   p_kst 3.265000e-02   p_cons 6.735000e-01   p_joint 7.395000e-02

Joint ci ratio: 7.496317e-02	ci left: 8.039339e-02	ci right 8.668754e-02	k: 2505	n:30000
Cons ci ratio: 1.613513e-02	ci left: 6.576189e-01	ci right 6.683495e-01	k: 19890	n:30000
KS ci ratio: 1.235472e-01	ci left: 3.045747e-02	ci right 3.450040e-02	k: 973	n:30000
EXPH5   30000 perm   7 sec   (4304 perm/sec)   p_kst 3.243333e-02   p_cons 6.630000e-01   p_joint 8.350000e-02

Joint ci ratio: 6.771612e-02	ci left: 7.467643e-02	ci right 7.993513e-02	k: 3091	n:40000
Cons ci ratio: 1.401263e-02	ci left: 6.570895e-01	ci right 6.663871e-01	k: 26470	n:40000
KS ci ratio: 1.060150e-01	ci left: 3.129522e-02	ci right 3.482299e-02	k: 1321	n:40000
EXPH5   40000 perm   10 sec   (4208 perm/sec)   p_kst 3.302500e-02   p_cons 6.617500e-01   p_joint 7.727500e-02

Joint ci ratio: 5.476641e-02	ci left: 9.038896e-02	ci right 9.549841e-02	k: 4646	n:50000
Cons ci ratio: 1.179655e-02	ci left: 6.842393e-01	ci right 6.923788e-01	k: 34416	n:50000
KS ci ratio: 9.513594e-02	ci left: 3.127551e-02	ci right 3.441903e-02	k: 1641	n:50000
EXPH5   50000 perm   12 sec   (4131 perm/sec)   p_kst 3.282000e-02   p_cons 6.883200e-01   p_joint 9.292000e-02

Outputting figure to mutsig2_images.part000000000059/EXPH5.8_5994_50000_0.03282_0.68832_0.09292.png
                gene_name: EXPH5
               theta_stop: 0.095 
                    nperm: 50000 
                     p_ks: 0.033 
        ci_ks_bounds_left: 0.031 
       ci_ks_bounds_right: 0.034 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.093 
     ci_joint_bounds_left: 0.090 
    ci_joint_bounds_right: 0.095 

Current progress: 15 percent done.
EYA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.434929e-02	ci left: 3.327988e-01	ci right 3.514933e-01	k: 3421	n:10000
Cons ci ratio: 6.250251e-02	ci left: 2.733932e-01	ci right 2.911338e-01	k: 2822	n:10000
KS ci ratio: 4.895376e-02	ci left: 3.810207e-01	ci right 4.002431e-01	k: 3906	n:10000
EYA4   10000 perm   2 sec   (5920 perm/sec)   p_kst 3.906000e-01   p_cons 2.822000e-01   p_joint 3.421000e-01

Outputting figure to mutsig2_images.part000000000059/EYA4.7_2101_10000_0.3906_0.2822_0.3421.png
                gene_name: EYA4
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 18 percent done.
F9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.149895e-02	ci left: 5.979496e-01	ci right 6.171877e-01	k: 6076	n:10000
Cons ci ratio: 5.400106e-02	ci left: 3.356792e-01	ci right 3.544111e-01	k: 3450	n:10000
KS ci ratio: 4.200647e-02	ci left: 4.555849e-01	ci right 4.752352e-01	k: 4654	n:10000
F9   10000 perm   2 sec   (6216 perm/sec)   p_kst 4.654000e-01   p_cons 3.450000e-01   p_joint 6.076000e-01

Outputting figure to mutsig2_images.part000000000059/F9.7_1418_10000_0.4654_0.345_0.6076.png
                gene_name: F9
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 21 percent done.
EXOC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.585446e-02	ci left: 1.650429e-01	ci right 1.799484e-01	k: 1724	n:10000
Cons ci ratio: 1.045236e-01	ci left: 1.168187e-01	ci right 1.298017e-01	k: 1232	n:10000
KS ci ratio: 8.686029e-02	ci left: 1.618004e-01	ci right 1.765928e-01	k: 1691	n:10000
EXOC1   10000 perm   2 sec   (6045 perm/sec)   p_kst 1.691000e-01   p_cons 1.232000e-01   p_joint 1.724000e-01

Joint ci ratio: 6.622928e-02	ci left: 1.440912e-01	ci right 1.540110e-01	k: 2980	n:20000
Cons ci ratio: 7.394489e-02	ci left: 1.186258e-01	ci right 1.277841e-01	k: 2463	n:20000
KS ci ratio: 5.988238e-02	ci left: 1.711398e-01	ci right 1.817544e-01	k: 3528	n:20000
EXOC1   20000 perm   4 sec   (5396 perm/sec)   p_kst 1.764000e-01   p_cons 1.231500e-01   p_joint 1.490000e-01

Outputting figure to mutsig2_images.part000000000059/EXOC1.6_2757_20000_0.1764_0.12315_0.149.png
                gene_name: EXOC1
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 24 percent done.
F13A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.349449e-02	ci left: 8.879038e-01	ci right 9.000656e-01	k: 8941	n:10000
Cons ci ratio: 2.419615e-02	ci left: 7.152252e-01	ci right 7.328441e-01	k: 7241	n:10000
KS ci ratio: 2.120649e-02	ci left: 7.652685e-01	ci right 7.817719e-01	k: 7736	n:10000
F13A1   10000 perm   2 sec   (5886 perm/sec)   p_kst 7.736000e-01   p_cons 7.241000e-01   p_joint 8.941000e-01

Outputting figure to mutsig2_images.part000000000059/F13A1.5_2255_10000_0.7736_0.7241_0.8941.png
                gene_name: F13A1
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 27 percent done.
EZH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.595672e-02	ci left: 3.198913e-01	ci right 3.384084e-01	k: 3291	n:10000
Cons ci ratio: 1.164346e-01	ci left: 9.584256e-02	ci right 1.077905e-01	k: 1017	n:10000
KS ci ratio: 4.132906e-02	ci left: 4.636729e-01	ci right 4.833426e-01	k: 4735	n:10000
EZH1   10000 perm   2 sec   (6276 perm/sec)   p_kst 4.735000e-01   p_cons 1.017000e-01   p_joint 3.291000e-01

Joint ci ratio: 5.279992e-02	ci left: 2.103134e-01	ci right 2.217693e-01	k: 4320	n:20000
Cons ci ratio: 8.213131e-02	ci left: 9.803498e-02	ci right 1.064811e-01	k: 2044	n:20000
KS ci ratio: 2.961908e-02	ci left: 4.599160e-01	ci right 4.737937e-01	k: 9337	n:20000
EZH1   20000 perm   4 sec   (5628 perm/sec)   p_kst 4.668500e-01   p_cons 1.022000e-01   p_joint 2.160000e-01

Outputting figure to mutsig2_images.part000000000059/EZH1.4_2320_20000_0.46685_0.1022_0.216.png
                gene_name: EZH1
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.098 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 30 percent done.
EZH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.245670e-01	ci left: 8.446093e-02	ci right 9.577916e-02	k: 900	n:10000
Cons ci ratio: 2.309032e-02	ci left: 7.337090e-01	ci right 7.509496e-01	k: 7424	n:10000
KS ci ratio: 1.438733e-01	ci left: 6.410846e-02	ci right 7.414431e-02	k: 690	n:10000
EZH2   10000 perm   2 sec   (6318 perm/sec)   p_kst 6.900000e-02   p_cons 7.424000e-01   p_joint 9.000000e-02

Joint ci ratio: 9.070869e-02	ci left: 8.151323e-02	ci right 8.930779e-02	k: 1707	n:20000
Cons ci ratio: 1.629763e-02	ci left: 7.369846e-01	ci right 7.491447e-01	k: 14862	n:20000
KS ci ratio: 1.006834e-01	ci left: 6.689222e-02	ci right 7.403327e-02	k: 1408	n:20000
EZH2   20000 perm   4 sec   (5670 perm/sec)   p_kst 7.040000e-02   p_cons 7.431000e-01   p_joint 8.535000e-02

Joint ci ratio: 6.978492e-02	ci left: 9.183592e-02	ci right 9.850938e-02	k: 2854	n:30000
Cons ci ratio: 1.333954e-02	ci left: 7.371767e-01	ci right 7.471097e-01	k: 22265	n:30000
KS ci ratio: 8.209335e-02	ci left: 6.772640e-02	ci right 7.355708e-02	k: 2118	n:30000
EZH2   30000 perm   6 sec   (5386 perm/sec)   p_kst 7.060000e-02   p_cons 7.421667e-01   p_joint 9.513333e-02

Outputting figure to mutsig2_images.part000000000059/EZH2.4_2332_30000_0.0706_0.74217_0.095133.png
                gene_name: EZH2
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.071 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.074 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.095 
     ci_joint_bounds_left: 0.092 
    ci_joint_bounds_right: 0.099 

Current progress: 33 percent done.
EXOC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.117314e-02	ci left: 1.813680e-01	ci right 1.968136e-01	k: 1890	n:10000
Cons ci ratio: 1.042345e-01	ci left: 1.174050e-01	ci right 1.304149e-01	k: 1238	n:10000
KS ci ratio: 7.658334e-02	ci left: 1.995881e-01	ci right 2.155826e-01	k: 2075	n:10000
EXOC3   10000 perm   1 sec   (6779 perm/sec)   p_kst 2.075000e-01   p_cons 1.238000e-01   p_joint 1.890000e-01

Joint ci ratio: 7.765789e-02	ci left: 1.085947e-01	ci right 1.174182e-01	k: 2259	n:20000
Cons ci ratio: 7.404775e-02	ci left: 1.183306e-01	ci right 1.274793e-01	k: 2457	n:20000
KS ci ratio: 5.297981e-02	ci left: 2.091746e-01	ci right 2.206084e-01	k: 4297	n:20000
EXOC3   20000 perm   3 sec   (6005 perm/sec)   p_kst 2.148500e-01   p_cons 1.228500e-01   p_joint 1.129500e-01

Outputting figure to mutsig2_images.part000000000059/EXOC3.3_2286_20000_0.21485_0.12285_0.11295.png
                gene_name: EXOC3
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 36 percent done.
EXOC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.163074e-01	ci left: 9.603734e-02	ci right 1.079956e-01	k: 1019	n:10000
Cons ci ratio: 2.357589e-01	ci left: 2.372311e-02	ci right 3.015646e-02	k: 268	n:10000
KS ci ratio: 5.657045e-02	ci left: 3.151274e-01	ci right 3.335750e-01	k: 3243	n:10000
EXOC4   10000 perm   2 sec   (6251 perm/sec)   p_kst 3.243000e-01   p_cons 2.680000e-02   p_joint 1.019000e-01

Joint ci ratio: 1.156747e-01	ci left: 5.115076e-02	ci right 5.747960e-02	k: 1085	n:20000
Cons ci ratio: 1.649854e-01	ci left: 2.518148e-02	ci right 2.975729e-02	k: 548	n:20000
KS ci ratio: 4.004249e-02	ci left: 3.174155e-01	ci right 3.304358e-01	k: 6478	n:20000
EXOC4   20000 perm   4 sec   (5580 perm/sec)   p_kst 3.239000e-01   p_cons 2.740000e-02   p_joint 5.425000e-02

Joint ci ratio: 9.000558e-02	ci left: 5.678398e-02	ci right 6.216840e-02	k: 1783	n:30000
Cons ci ratio: 1.342508e-01	ci left: 2.577538e-02	ci right 2.951685e-02	k: 828	n:30000
KS ci ratio: 3.258417e-02	ci left: 3.200987e-01	ci right 3.307351e-01	k: 9762	n:30000
EXOC4   30000 perm   6 sec   (5327 perm/sec)   p_kst 3.254000e-01   p_cons 2.760000e-02   p_joint 5.943333e-02

Joint ci ratio: 7.698277e-02	ci left: 5.852675e-02	ci right 6.323725e-02	k: 2434	n:40000
Cons ci ratio: 1.168279e-01	ci left: 2.577352e-02	ci right 2.899558e-02	k: 1094	n:40000
KS ci ratio: 2.855196e-02	ci left: 3.157033e-01	ci right 3.248728e-01	k: 12811	n:40000
EXOC4   40000 perm   8 sec   (5169 perm/sec)   p_kst 3.202750e-01   p_cons 2.735000e-02   p_joint 6.085000e-02

Joint ci ratio: 9.024903e-02	ci left: 3.471669e-02	ci right 3.801742e-02	k: 1817	n:50000
Cons ci ratio: 1.045238e-01	ci left: 2.592813e-02	ci right 2.880710e-02	k: 1367	n:50000
KS ci ratio: 2.557876e-02	ci left: 3.154932e-01	ci right 3.236877e-01	k: 15979	n:50000
EXOC4   50000 perm   10 sec   (5011 perm/sec)   p_kst 3.195800e-01   p_cons 2.734000e-02   p_joint 3.634000e-02

Joint ci ratio: 8.315224e-02	ci left: 3.422955e-02	ci right 3.721558e-02	k: 2142	n:60000
Cons ci ratio: 9.555458e-02	ci left: 2.597811e-02	ci right 2.860121e-02	k: 1636	n:60000
KS ci ratio: 2.339134e-02	ci left: 3.150883e-01	ci right 3.225625e-01	k: 19129	n:60000
EXOC4   60000 perm   12 sec   (4891 perm/sec)   p_kst 3.188167e-01   p_cons 2.726667e-02   p_joint 3.570000e-02

Outputting figure to mutsig2_images.part000000000059/EXOC4.3_3006_60000_0.31882_0.027267_0.0357.png
                gene_name: EXOC4
               theta_stop: 0.096 
                    nperm: 60000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.027 
      ci_cons_bounds_left: 0.026 
     ci_cons_bounds_right: 0.029 
                  p_joint: 0.036 
     ci_joint_bounds_left: 0.034 
    ci_joint_bounds_right: 0.037 

Current progress: 39 percent done.
EXOSC10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.390706e-03	ci left: 9.411809e-01	ci right 9.501572e-01	k: 9458	n:10000
KS ci ratio: 2.286102e-02	ci left: 7.375496e-01	ci right 7.547068e-01	k: 7462	n:10000
EXOSC10   10000 perm   2 sec   (6352 perm/sec)   p_kst 7.462000e-01   p_cons 9.458000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000059/EXOSC10.3_2758_10000_0.7462_0.9458_1.png
                gene_name: EXOSC10
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 42 percent done.
EXTL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.670574e-02	ci left: 4.035254e-01	ci right 4.229252e-01	k: 4132	n:10000
KS ci ratio: 3.335384e-02	ci left: 5.702543e-01	ci right 5.896991e-01	k: 5800	n:10000
EXTL1   10000 perm   2 sec   (6518 perm/sec)   p_kst 5.800000e-01   p_cons 4.132000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000059/EXTL1.3_2075_10000_0.58_0.4132_1.png
                gene_name: EXTL1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 45 percent done.
EYA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.553251e-02	ci left: 1.371732e-01	ci right 1.510349e-01	k: 1440	n:10000
Cons ci ratio: 1.279515e-01	ci left: 8.028489e-02	ci right 9.135778e-02	k: 857	n:10000
KS ci ratio: 5.259752e-02	ci left: 3.476023e-01	ci right 3.664811e-01	k: 3570	n:10000
EYA1   10000 perm   2 sec   (6635 perm/sec)   p_kst 3.570000e-01   p_cons 8.570000e-02   p_joint 1.440000e-01

Joint ci ratio: 4.851414e-02	ci left: 2.400931e-01	ci right 2.520809e-01	k: 4921	n:20000
Cons ci ratio: 9.138306e-02	ci left: 8.038716e-02	ci right 8.813421e-02	k: 1684	n:20000
KS ci ratio: 3.729749e-02	ci left: 3.491115e-01	ci right 3.624305e-01	k: 7115	n:20000
EYA1   20000 perm   3 sec   (5895 perm/sec)   p_kst 3.557500e-01   p_cons 8.420000e-02   p_joint 2.460500e-01

Outputting figure to mutsig2_images.part000000000059/EYA1.3_1872_20000_0.35575_0.0842_0.24605.png
                gene_name: EYA1
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.084 
      ci_cons_bounds_left: 0.080 
     ci_cons_bounds_right: 0.088 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 48 percent done.
F10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.712277e-02	ci left: 8.324623e-01	ci right 8.469393e-01	k: 8398	n:10000
KS ci ratio: 1.353717e-02	ci left: 8.872890e-01	ci right 8.994808e-01	k: 8935	n:10000
F10   10000 perm   1 sec   (6891 perm/sec)   p_kst 8.935000e-01   p_cons 8.398000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000059/F10.3_1499_10000_0.8935_0.8398_1.png
                gene_name: F10
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 52 percent done.
F11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.760228e-02	ci left: 6.591754e-01	ci right 6.777264e-01	k: 6685	n:10000
Cons ci ratio: 6.175519e-02	ci left: 2.782460e-01	ci right 2.960782e-01	k: 2871	n:10000
KS ci ratio: 1.490019e-02	ci left: 8.671325e-01	ci right 8.802490e-01	k: 8738	n:10000
F11   10000 perm   2 sec   (6496 perm/sec)   p_kst 8.738000e-01   p_cons 2.871000e-01   p_joint 6.685000e-01

Outputting figure to mutsig2_images.part000000000059/F11.3_1934_10000_0.8738_0.2871_0.6685.png
                gene_name: F11
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 55 percent done.
F2RL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.517326e-02	ci left: 6.989787e-01	ci right 7.169000e-01	k: 7080	n:10000
Cons ci ratio: 2.150284e-02	ci left: 7.603080e-01	ci right 7.769353e-01	k: 7687	n:10000
KS ci ratio: 4.588733e-02	ci left: 4.120947e-01	ci right 4.315508e-01	k: 4218	n:10000
F2RL1   10000 perm   1 sec   (7147 perm/sec)   p_kst 4.218000e-01   p_cons 7.687000e-01   p_joint 7.080000e-01

Outputting figure to mutsig2_images.part000000000059/F2RL1.3_1202_10000_0.4218_0.7687_0.708.png
                gene_name: F2RL1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 58 percent done.
FAAH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.044241e-02	ci left: 7.780316e-01	ci right 7.942014e-01	k: 7862	n:10000
Cons ci ratio: 3.095346e-02	ci left: 6.062845e-01	ci right 6.254480e-01	k: 6159	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
FAAH2   10000 perm   1 sec   (6879 perm/sec)   p_kst 1   p_cons 6.159000e-01   p_joint 7.862000e-01

Outputting figure to mutsig2_images.part000000000059/FAAH2.3_1643_10000_1_0.6159_0.7862.png
                gene_name: FAAH2
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.79 

Current progress: 61 percent done.
EXOC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.597175e-02	ci left: 5.329749e-01	ci right 5.526002e-01	k: 5428	n:10000
Cons ci ratio: 3.400848e-02	ci left: 5.607287e-01	ci right 5.802302e-01	k: 5705	n:10000
KS ci ratio: 5.960880e-02	ci left: 2.928118e-01	ci right 3.109038e-01	k: 3018	n:10000
EXOC2   10000 perm   2 sec   (6174 perm/sec)   p_kst 3.018000e-01   p_cons 5.705000e-01   p_joint 5.428000e-01

Outputting figure to mutsig2_images.part000000000059/EXOC2.2_2883_10000_0.3018_0.5705_0.5428.png
                gene_name: EXOC2
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 64 percent done.
EXOC3L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.228728e-02	ci left: 2.747796e-01	ci right 2.925466e-01	k: 2836	n:10000
Cons ci ratio: 1.554271e-01	ci left: 5.513502e-02	ci right 6.452344e-02	k: 597	n:10000
KS ci ratio: 2.008940e-02	ci left: 7.839105e-01	ci right 7.999191e-01	k: 7920	n:10000
EXOC3L2   10000 perm   1 sec   (7410 perm/sec)   p_kst 7.920000e-01   p_cons 5.970000e-02   p_joint 2.836000e-01

Joint ci ratio: 6.142041e-02	ci left: 1.639778e-01	ci right 1.744185e-01	k: 3383	n:20000
Cons ci ratio: 1.075349e-01	ci left: 5.894035e-02	ci right 6.568759e-02	k: 1245	n:20000
KS ci ratio: 1.411890e-02	ci left: 7.883274e-01	ci right 7.995870e-01	k: 15880	n:20000
EXOC3L2   20000 perm   3 sec   (6629 perm/sec)   p_kst 7.940000e-01   p_cons 6.225000e-02   p_joint 1.691500e-01

Joint ci ratio: 5.136026e-02	ci left: 1.584076e-01	ci right 1.667912e-01	k: 4877	n:30000
Cons ci ratio: 9.027489e-02	ci left: 5.645771e-02	ci right 6.182806e-02	k: 1773	n:30000
KS ci ratio: 1.156907e-02	ci left: 7.882024e-01	ci right 7.974075e-01	k: 23785	n:30000
EXOC3L2   30000 perm   5 sec   (6301 perm/sec)   p_kst 7.928333e-01   p_cons 5.910000e-02   p_joint 1.625667e-01

Outputting figure to mutsig2_images.part000000000059/EXOC3L2.2_1266_30000_0.79283_0.0591_0.16257.png
                gene_name: EXOC3L2
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.059 
      ci_cons_bounds_left: 0.056 
     ci_cons_bounds_right: 0.062 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 67 percent done.
EXOC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.197123e-03	ci left: 9.433622e-01	ci right 9.521746e-01	k: 9479	n:10000
Cons ci ratio: 8.552514e-02	ci left: 1.661239e-01	ci right 1.810667e-01	k: 1735	n:10000
KS ci ratio: 1.916501e-02	ci left: 7.992275e-01	ci right 8.147933e-01	k: 8071	n:10000
EXOC5   10000 perm   1 sec   (6888 perm/sec)   p_kst 8.071000e-01   p_cons 1.735000e-01   p_joint 9.479000e-01

Outputting figure to mutsig2_images.part000000000059/EXOC5.2_2199_10000_0.8071_0.1735_0.9479.png
                gene_name: EXOC5
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 70 percent done.
EXOC8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.017199e-01	ci left: 1.226845e-01	ci right 1.359322e-01	k: 1292	n:10000
KS ci ratio: 1.051078e-01	ci left: 1.156461e-01	ci right 1.285750e-01	k: 1220	n:10000
EXOC8   10000 perm   1 sec   (6923 perm/sec)   p_kst 1.220000e-01   p_cons 1.292000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 7.191211e-02	ci left: 1.246790e-01	ci right 1.340291e-01	k: 2586	n:20000
KS ci ratio: 7.343592e-02	ci left: 1.201019e-01	ci right 1.293076e-01	k: 2493	n:20000
EXOC8   20000 perm   3 sec   (6142 perm/sec)   p_kst 1.246500e-01   p_cons 1.293000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000059/EXOC8.2_2182_20000_0.12465_0.1293_1.png
                gene_name: EXOC8
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
EXOG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.120139e-01	ci left: 1.029565e-01	ci right 1.152723e-01	k: 1090	n:10000
Cons ci ratio: 3.556068e-02	ci left: 5.386835e-01	ci right 5.582883e-01	k: 5485	n:10000
KS ci ratio: 1.795348e-01	ci left: 4.140268e-02	ci right 4.966468e-02	k: 454	n:10000
EXOG   10000 perm   1 sec   (7489 perm/sec)   p_kst 4.540000e-02   p_cons 5.485000e-01   p_joint 1.090000e-01

Joint ci ratio: 1.538214e-02	ci left: 7.586067e-01	ci right 7.704163e-01	k: 15291	n:20000
Cons ci ratio: 2.410556e-02	ci left: 5.624528e-01	ci right 5.762270e-01	k: 11387	n:20000
KS ci ratio: 1.251624e-01	ci left: 4.381688e-02	ci right 4.971579e-02	k: 934	n:20000
EXOG   20000 perm   3 sec   (6595 perm/sec)   p_kst 4.670000e-02   p_cons 5.693500e-01   p_joint 7.645500e-01

Joint ci ratio: 1.253912e-02	ci left: 7.602942e-01	ci right 7.699211e-01	k: 22954	n:30000
Cons ci ratio: 1.969254e-02	ci left: 5.634732e-01	ci right 5.747134e-01	k: 17073	n:30000
KS ci ratio: 1.029095e-01	ci left: 4.375443e-02	ci right 4.853396e-02	k: 1383	n:30000
EXOG   30000 perm   5 sec   (6257 perm/sec)   p_kst 4.610000e-02   p_cons 5.691000e-01   p_joint 7.651333e-01

Joint ci ratio: 9.799510e-05	ci left: 9.999078e-01	ci right 1	k: 40000	n:40000
Cons ci ratio: 1.701186e-02	ci left: 5.654563e-01	ci right 5.751834e-01	k: 22813	n:40000
KS ci ratio: 8.918167e-02	ci left: 4.401654e-02	ci right 4.814968e-02	k: 1842	n:40000
EXOG   40000 perm   7 sec   (6038 perm/sec)   p_kst 4.605000e-02   p_cons 5.703250e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000059/EXOG.2_1131_40000_0.04605_0.57032_1.png
                gene_name: EXOG
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.046 
        ci_ks_bounds_left: 0.044 
       ci_ks_bounds_right: 0.048 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
EXOSC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.175161e-02	ci left: 9.120382e-01	ci right 9.229172e-01	k: 9176	n:10000
KS ci ratio: 7.496836e-02	ci left: 2.065875e-01	ci right 2.227791e-01	k: 2146	n:10000
EXOSC4   10000 perm   1 sec   (8055 perm/sec)   p_kst 2.146000e-01   p_cons 9.176000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000059/EXOSC4.2_750_10000_0.2146_0.9176_1.png
                gene_name: EXOSC4
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
EXT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.286200e-02	ci left: 3.453165e-01	ci right 3.641682e-01	k: 3547	n:10000
KS ci ratio: 1.899873e-02	ci left: 8.019682e-01	ci right 8.174510e-01	k: 8098	n:10000
EXT1   10000 perm   1 sec   (6937 perm/sec)   p_kst 8.098000e-01   p_cons 3.547000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000059/EXT1.2_2285_10000_0.8098_0.3547_1.png
                gene_name: EXT1
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
EYA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.544131e-02	ci left: 6.945411e-01	ci right 7.125402e-01	k: 7036	n:10000
Cons ci ratio: 1.881975e-02	ci left: 8.049125e-01	ci right 8.203049e-01	k: 8127	n:10000
KS ci ratio: 5.454299e-02	ci left: 3.312097e-01	ci right 3.498832e-01	k: 3405	n:10000
EYA3   10000 perm   1 sec   (7434 perm/sec)   p_kst 3.405000e-01   p_cons 8.127000e-01   p_joint 7.036000e-01

Outputting figure to mutsig2_images.part000000000059/EYA3.2_1790_10000_0.3405_0.8127_0.7036.png
                gene_name: EYA3
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 85 percent done.
F2R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.198041e-01	ci left: 9.087811e-02	ci right 1.025580e-01	k: 966	n:10000
KS ci ratio: 7.731236e-02	ci left: 1.965332e-01	ci right 2.124394e-01	k: 2044	n:10000
F2R   10000 perm   1 sec   (7434 perm/sec)   p_kst 2.044000e-01   p_cons 9.660000e-02   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 8.361947e-02	ci left: 9.484527e-02	ci right 1.031717e-01	k: 1979	n:20000
KS ci ratio: 5.472764e-02	ci left: 1.985325e-01	ci right 2.097536e-01	k: 4082	n:20000
F2R   20000 perm   3 sec   (6528 perm/sec)   p_kst 2.041000e-01   p_cons 9.895000e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000059/F2R.2_1286_20000_0.2041_0.09895_1.png
                gene_name: F2R
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.099 
      ci_cons_bounds_left: 0.095 
     ci_cons_bounds_right: 0.10 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
F7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.058215e-02	ci left: 7.757010e-01	ci right 7.919333e-01	k: 7839	n:10000
Cons ci ratio: 4.302484e-02	ci left: 4.437074e-01	ci right 4.633197e-01	k: 4535	n:10000
KS ci ratio: 7.596042e-02	ci left: 2.022494e-01	ci right 2.183197e-01	k: 2102	n:10000
F7   10000 perm   1 sec   (7448 perm/sec)   p_kst 2.102000e-01   p_cons 4.535000e-01   p_joint 7.839000e-01

Outputting figure to mutsig2_images.part000000000059/F7.2_1437_10000_0.2102_0.4535_0.7839.png
                gene_name: F7
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.79 

Current progress: 91 percent done.
FADS6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.519381e-03	ci left: 9.901638e-01	ci right 9.937407e-01	k: 9921	n:10000
Cons ci ratio: 5.731428e-02	ci left: 3.094718e-01	ci right 3.278340e-01	k: 3186	n:10000
KS ci ratio: 8.673992e-03	ci left: 9.490847e-01	ci right 9.574486e-01	k: 9534	n:10000
FADS6   10000 perm   1 sec   (7898 perm/sec)   p_kst 9.534000e-01   p_cons 3.186000e-01   p_joint 9.921000e-01

Outputting figure to mutsig2_images.part000000000059/FADS6.2_1077_10000_0.9534_0.3186_0.9921.png
                gene_name: FADS6
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 94 percent done.
FAM105B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.385306e+00	ci left: 2.814811e-04	ci right 1.441732e-03	k: 7	n:10000
Cons ci ratio: 2.292716e-01	ci left: 2.513779e-02	ci right 3.174074e-02	k: 283	n:10000
KS ci ratio: 2.537862e-01	ci left: 2.033901e-02	ci right 2.634310e-02	k: 232	n:10000
FAM105B   10000 perm   1 sec   (7573 perm/sec)   p_kst 2.320000e-02   p_cons 2.830000e-02   p_joint 7.000000e-04

Joint ci ratio: 4.817099e-01	ci left: 2.509150e-03	ci right 4.140543e-03	k: 65	n:20000
Cons ci ratio: 1.606734e-01	ci left: 2.657390e-02	ci right 3.126439e-02	k: 577	n:20000
KS ci ratio: 1.820756e-01	ci left: 2.058483e-02	ci right 2.475554e-02	k: 452	n:20000
FAM105B   20000 perm   3 sec   (6638 perm/sec)   p_kst 2.260000e-02   p_cons 2.885000e-02   p_joint 3.250000e-03

Joint ci ratio: 9.504544e-01	ci left: 3.048758e-04	ci right 8.659558e-04	k: 16	n:30000
Cons ci ratio: 1.418210e-01	ci left: 2.306968e-02	ci right 2.662315e-02	k: 744	n:30000
KS ci ratio: 1.493980e-01	ci left: 2.075518e-02	ci right 2.413818e-02	k: 672	n:30000
FAM105B   30000 perm   5 sec   (6227 perm/sec)   p_kst 2.240000e-02   p_cons 2.480000e-02   p_joint 5.333333e-04

Joint ci ratio: 6.441379e-01	ci left: 6.304261e-04	ci right 1.245764e-03	k: 36	n:40000
Cons ci ratio: 1.220256e-01	ci left: 2.361333e-02	ci right 2.670613e-02	k: 1005	n:40000
KS ci ratio: 1.270373e-01	ci left: 2.177117e-02	ci right 2.474860e-02	k: 929	n:40000
FAM105B   40000 perm   7 sec   (5959 perm/sec)   p_kst 2.322500e-02   p_cons 2.512500e-02   p_joint 9.000000e-04

Joint ci ratio: 1.925611e-01	ci left: 7.428193e-03	ci right 9.029691e-03	k: 410	n:50000
Cons ci ratio: 1.082416e-01	ci left: 2.417481e-02	ci right 2.696064e-02	k: 1277	n:50000
KS ci ratio: 1.125647e-01	ci left: 2.234550e-02	ci right 2.503019e-02	k: 1183	n:50000
FAM105B   50000 perm   9 sec   (5798 perm/sec)   p_kst 2.366000e-02   p_cons 2.554000e-02   p_joint 8.200000e-03

Joint ci ratio: 1.414774e-01	ci left: 1.173889e-02	ci right 1.354204e-02	k: 757	n:60000
Cons ci ratio: 9.912960e-02	ci left: 2.413947e-02	ci right 2.667339e-02	k: 1523	n:60000
KS ci ratio: 1.034983e-01	ci left: 2.214019e-02	ci right 2.457288e-02	k: 1400	n:60000
FAM105B   60000 perm   11 sec   (5664 perm/sec)   p_kst 2.333333e-02   p_cons 2.538333e-02   p_joint 1.261667e-02

Joint ci ratio: 1.302636e-01	ci left: 1.193889e-02	ci right 1.361615e-02	k: 893	n:70000
Cons ci ratio: 9.180277e-02	ci left: 2.421908e-02	ci right 2.656334e-02	k: 1776	n:70000
KS ci ratio: 9.598636e-02	ci left: 2.215327e-02	ci right 2.440077e-02	k: 1628	n:70000
FAM105B   70000 perm   13 sec   (5542 perm/sec)   p_kst 2.325714e-02   p_cons 2.537143e-02   p_joint 1.275714e-02

Joint ci ratio: 1.211151e-01	ci left: 1.214163e-02	ci right 1.371899e-02	k: 1033	n:80000
Cons ci ratio: 8.611017e-02	ci left: 2.416163e-02	ci right 2.634799e-02	k: 2019	n:80000
KS ci ratio: 8.980473e-02	ci left: 2.221681e-02	ci right 2.431796e-02	k: 1860	n:80000
FAM105B   80000 perm   15 sec   (5431 perm/sec)   p_kst 2.325000e-02   p_cons 2.523750e-02   p_joint 1.291250e-02

Joint ci ratio: 1.140025e-01	ci left: 1.222694e-02	ci right 1.371581e-02	k: 1166	n:90000
Cons ci ratio: 8.088475e-02	ci left: 2.440363e-02	ci right 2.647155e-02	k: 2288	n:90000
KS ci ratio: 8.464032e-02	ci left: 2.229162e-02	ci right 2.427260e-02	k: 2094	n:90000
FAM105B   90000 perm   17 sec   (5329 perm/sec)   p_kst 2.326667e-02   p_cons 2.542222e-02   p_joint 1.295556e-02

Joint ci ratio: 1.075932e-01	ci left: 1.239469e-02	ci right 1.381376e-02	k: 1309	n:100000
Cons ci ratio: 7.643137e-02	ci left: 2.464951e-02	ci right 2.661814e-02	k: 2562	n:100000
KS ci ratio: 8.009944e-02	ci left: 2.245229e-02	ci right 2.433550e-02	k: 2338	n:100000
FAM105B   100000 perm   19 sec   (5229 perm/sec)   p_kst 2.338000e-02   p_cons 2.562000e-02   p_joint 1.309000e-02

Joint ci ratio: 1.025861e-01	ci left: 1.242752e-02	ci right 1.378015e-02	k: 1440	n:110000
Cons ci ratio: 7.309163e-02	ci left: 2.454963e-02	ci right 2.642096e-02	k: 2802	n:110000
KS ci ratio: 7.650745e-02	ci left: 2.241656e-02	ci right 2.420869e-02	k: 2563	n:110000
FAM105B   110000 perm   21 sec   (5128 perm/sec)   p_kst 2.330000e-02   p_cons 2.547273e-02   p_joint 1.309091e-02

Joint ci ratio: 9.866493e-02	ci left: 1.234234e-02	ci right 1.363136e-02	k: 1557	n:120000
Cons ci ratio: 6.998954e-02	ci left: 2.458264e-02	ci right 2.637372e-02	k: 3056	n:120000
KS ci ratio: 7.361617e-02	ci left: 2.223288e-02	ci right 2.394027e-02	k: 2769	n:120000
FAM105B   120000 perm   24 sec   (5034 perm/sec)   p_kst 2.307500e-02   p_cons 2.546667e-02   p_joint 1.297500e-02

Outputting figure to mutsig2_images.part000000000059/FAM105B.2_1087_120000_0.023075_0.025467_0.012975.png
                gene_name: FAM105B
               theta_stop: 0.099 
                    nperm: 120000 
                     p_ks: 0.023 
        ci_ks_bounds_left: 0.022 
       ci_ks_bounds_right: 0.024 
                   p_cons: 0.025 
      ci_cons_bounds_left: 0.025 
     ci_cons_bounds_right: 0.026 
                  p_joint: 0.013 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.014 

Current progress: 97 percent done.
FAM107B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.924902e-02	ci left: 4.894516e-01	ci right 5.091488e-01	k: 4993	n:10000
Cons ci ratio: 1.086341e-01	ci left: 1.089077e-01	ci right 1.215175e-01	k: 1151	n:10000
KS ci ratio: 1.917731e-02	ci left: 7.990245e-01	ci right 8.145964e-01	k: 8069	n:10000
FAM107B   10000 perm   1 sec   (7690 perm/sec)   p_kst 8.069000e-01   p_cons 1.151000e-01   p_joint 4.993000e-01

Joint ci ratio: 3.070962e-02	ci left: 4.419896e-01	ci right 4.558252e-01	k: 8978	n:20000
Cons ci ratio: 7.661082e-02	ci left: 1.112981e-01	ci right 1.202140e-01	k: 2314	n:20000
KS ci ratio: 1.355139e-02	ci left: 8.015621e-01	ci right 8.125485e-01	k: 16142	n:20000
FAM107B   20000 perm   3 sec   (6740 perm/sec)   p_kst 8.071000e-01   p_cons 1.157000e-01   p_joint 4.489000e-01

Outputting figure to mutsig2_images.part000000000059/FAM107B.2_941_20000_0.8071_0.1157_0.4489.png
                gene_name: FAM107B
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000059
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 59 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1707>
Subject: Job 8004062: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1707>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000060> was used as the working directory.
Started at Sun Nov 11 15:05:45 2012
Results reported at Sun Nov 11 15:14:59 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000060.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000060.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 60  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000060.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    594.81 sec.
    Max Memory :      4745 MB
    Max Swap   :      7174 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
60
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 60
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 60: processing genes 5339 - 5428
Calculating significance of each gene.
Using projection method.
5339	FAM108B1	1
5340	FAM108C1	1
5341	FAM109A	1
5342	FAM109B	7.343909e-01
5343	FAM110A	1
5344	FAM110B	1.229068e-01
5345	FAM110C	3.559000e-01
5346	FAM111A	1
5347	FAM111B	1
5348	FAM113A	4.677506e-01
5349	FAM113B	2.337175e-01
5350	FAM114A1	7.367053e-01
5351	FAM114A2	4.089441e-01
5352	FAM115A	4.542969e-01
5353	FAM115C	1
5354	FAM116A	7.521369e-01
5355	FAM116B	1
5356	FAM117A	3.849844e-01
5357	FAM117B	8.216396e-01
5358	FAM118A	1
5359	FAM118B	3.675948e-01
5360	FAM119A	3.627854e-01
5361	FAM119B	5.106826e-01
5362	FAM120A	9.909774e-01
5363	FAM120AOS	1
5364	FAM120B	3.237558e-01
5365	FAM120C	6.209137e-01
5366	FAM122A	1
5367	FAM122B	1
5368	FAM122C	1
5369	FAM123A	6.074625e-01
5370	FAM123B	1.427027e-01
5371	FAM123C	1
5372	FAM124A	1
5373	FAM124B	1.849419e-02
5374	FAM125A	1
5375	FAM125B	1
5376	FAM126A	6.511505e-01
5377	FAM126B	3.129257e-01
5378	FAM127A	4.027279e-01
5379	FAM127B	1.234263e-01
5380	FAM127C	1
5381	FAM128A	2.338768e-01
5382	FAM128B	1
5383	FAM129A	1
5384	FAM129B	4.264394e-01
5385	FAM129C	1
5386	FAM131A	7.739684e-01
5387	FAM131B	5.060894e-01
5388	FAM131C	1
5389	FAM132A	1
5390	FAM133A	4.152449e-01
5391	FAM133B	1
5392	FAM134A	1.949331e-01
5393	FAM134B	7.549253e-01
5394	FAM134C	6.408767e-01
5395	FAM135A	1
5396	FAM135B	1
5397	FAM136A	1.446526e-01
5398	FAM136B	1
5399	FAM13A	9.016901e-01
5400	FAM13B	1
5401	FAM13C	1
5402	FAM149A	7.386481e-01
5403	FAM150A	1
5404	FAM150B	1
5405	FAM151A	7.966737e-01
5406	FAM151B	1
5407	FAM153A	4.157006e-01
5408	FAM153B	3.119754e-01
5409	FAM153C	1
5410	FAM154A	8.676255e-02
5411	FAM154B	1.528421e-01
5412	FAM155A	1.987154e-02
5413	FAM155B	1
5414	FAM158A	1
5415	FAM159A	8.215180e-04
5416	FAM160A2	9.634421e-01
5417	FAM160B1	5.522986e-01
5418	FAM160B2	7.712048e-01
5419	FAM161A	8.019879e-01
5420	FAM161B	7.514282e-01
5421	FAM162A	1.318009e-01
5422	FAM162B	3.430657e-01
5423	FAM163A	1.344897e-01
5424	FAM164A	1
5425	FAM164C	1
5426	FAM165B	1
5427	FAM166A	3.483697e-01
5428	FAM166B	1.082849e-01
Done

Running MutSig 2:
Scatter job 60: processing genes 5339 - 5428
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
FAM135B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.185929e-02	ci left: 7.543371e-01	ci right 7.711095e-01	k: 7628	n:10000
Cons ci ratio: 3.134068e-02	ci left: 6.003594e-01	ci right 6.195765e-01	k: 6100	n:10000
KS ci ratio: 2.675954e-02	ci left: 6.728712e-01	ci right 6.912227e-01	k: 6821	n:10000
FAM135B   10000 perm   3 sec   (3484 perm/sec)   p_kst 6.821000e-01   p_cons 6.100000e-01   p_joint 7.628000e-01

Outputting figure to mutsig2_images.part000000000060/FAM135B.45_4297_10000_0.6821_0.61_0.7628.png
                gene_name: FAM135B
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 3 percent done.
FAM123C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.301200e-01	ci left: 7.776183e-02	ci right 8.868240e-02	k: 831	n:10000
Cons ci ratio: 4.888187e-02	ci left: 3.817174e-01	ci right 4.009460e-01	k: 3913	n:10000
KS ci ratio: 1.799496e-01	ci left: 4.121131e-02	ci right 4.945618e-02	k: 452	n:10000
FAM123C   10000 perm   2 sec   (5711 perm/sec)   p_kst 4.520000e-02   p_cons 3.913000e-01   p_joint 8.310000e-02

Joint ci ratio: 9.412430e-02	ci left: 7.603179e-02	ci right 8.359090e-02	k: 1595	n:20000
Cons ci ratio: 3.353824e-02	ci left: 3.989837e-01	ci right 4.126437e-01	k: 8116	n:20000
KS ci ratio: 1.276899e-01	ci left: 4.211982e-02	ci right 4.791339e-02	k: 899	n:20000
FAM123C   20000 perm   4 sec   (5094 perm/sec)   p_kst 4.495000e-02   p_cons 4.058000e-01   p_joint 7.975000e-02

Joint ci ratio: 6.306227e-02	ci left: 1.104903e-01	ci right 1.177180e-01	k: 3422	n:30000
Cons ci ratio: 2.749290e-02	ci left: 3.983404e-01	ci right 4.094782e-01	k: 12117	n:30000
KS ci ratio: 1.040978e-01	ci left: 4.277918e-02	ci right 4.750942e-02	k: 1353	n:30000
FAM123C   30000 perm   6 sec   (4884 perm/sec)   p_kst 4.510000e-02   p_cons 4.039000e-01   p_joint 1.140667e-01

Joint ci ratio: 6.252401e-02	ci left: 8.667058e-02	ci right 9.228918e-02	k: 3578	n:40000
Cons ci ratio: 2.326486e-02	ci left: 4.102651e-01	ci right 4.199473e-01	k: 16604	n:40000
KS ci ratio: 8.928329e-02	ci left: 4.391867e-02	ci right 4.804756e-02	k: 1838	n:40000
FAM123C   40000 perm   8 sec   (4717 perm/sec)   p_kst 4.595000e-02   p_cons 4.151000e-01   p_joint 8.945000e-02

Outputting figure to mutsig2_images.part000000000060/FAM123C.12_2590_40000_0.04595_0.4151_0.08945.png
                gene_name: FAM123C
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.046 
        ci_ks_bounds_left: 0.044 
       ci_ks_bounds_right: 0.048 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.089 
     ci_joint_bounds_left: 0.087 
    ci_joint_bounds_right: 0.092 

Current progress: 5 percent done.
FAM123B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.084215e-01	ci left: 1.092981e-01	ci right 1.219268e-01	k: 1155	n:10000
Cons ci ratio: 3.820347e-02	ci left: 5.029509e-01	ci right 5.226417e-01	k: 5128	n:10000
KS ci ratio: 1.592875e-01	ci left: 5.253552e-02	ci right 6.172460e-02	k: 570	n:10000
FAM123B   10000 perm   2 sec   (5057 perm/sec)   p_kst 5.700000e-02   p_cons 5.128000e-01   p_joint 1.155000e-01

Joint ci ratio: 8.013786e-02	ci left: 1.025519e-01	ci right 1.111628e-01	k: 2136	n:20000
Cons ci ratio: 2.769988e-02	ci left: 4.933459e-01	ci right 5.072541e-01	k: 10006	n:20000
KS ci ratio: 1.165281e-01	ci left: 5.042141e-02	ci right 5.670918e-02	k: 1070	n:20000
FAM123B   20000 perm   4 sec   (4573 perm/sec)   p_kst 5.350000e-02   p_cons 5.003000e-01   p_joint 1.068000e-01

Joint ci ratio: 6.307267e-02	ci left: 1.104574e-01	ci right 1.176842e-01	k: 3421	n:30000
Cons ci ratio: 2.261743e-02	ci left: 4.946256e-01	ci right 5.059743e-01	k: 15009	n:30000
KS ci ratio: 9.604899e-02	ci left: 5.006810e-02	ci right 5.515231e-02	k: 1577	n:30000
FAM123B   30000 perm   7 sec   (4380 perm/sec)   p_kst 5.256667e-02   p_cons 5.003000e-01   p_joint 1.140333e-01

Outputting figure to mutsig2_images.part000000000060/FAM123B.8_3412_30000_0.052567_0.5003_0.11403.png
                gene_name: FAM123B
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.053 
        ci_ks_bounds_left: 0.050 
       ci_ks_bounds_right: 0.055 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 8 percent done.
FAM155A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.768831e-03	ci left: 9.368238e-01	ci right 9.461169e-01	k: 9416	n:10000
Cons ci ratio: 1.206707e-02	ci left: 9.078193e-01	ci right 9.189385e-01	k: 9135	n:10000
KS ci ratio: 1.639181e-02	ci left: 8.440725e-01	ci right 8.581223e-01	k: 8512	n:10000
FAM155A   10000 perm   2 sec   (5557 perm/sec)   p_kst 8.512000e-01   p_cons 9.135000e-01   p_joint 9.416000e-01

Outputting figure to mutsig2_images.part000000000060/FAM155A.6_1389_10000_0.8512_0.9135_0.9416.png
                gene_name: FAM155A
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 11 percent done.
FAM120B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.115659e-02	ci left: 6.031711e-01	ci right 6.223632e-01	k: 6128	n:10000
Cons ci ratio: 3.472158e-02	ci left: 5.505053e-01	ci right 5.700595e-01	k: 5603	n:10000
KS ci ratio: 5.392946e-02	ci left: 3.362752e-01	ci right 3.550148e-01	k: 3456	n:10000
FAM120B   10000 perm   2 sec   (5320 perm/sec)   p_kst 3.456000e-01   p_cons 5.603000e-01   p_joint 6.128000e-01

Outputting figure to mutsig2_images.part000000000060/FAM120B.5_2769_10000_0.3456_0.5603_0.6128.png
                gene_name: FAM120B
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 13 percent done.
FAM129B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.013601e-01	ci left: 1.234670e-01	ci right 1.367493e-01	k: 1300	n:10000
Cons ci ratio: 8.484586e-02	ci left: 1.683846e-01	ci right 1.834047e-01	k: 1758	n:10000
KS ci ratio: 1.349556e-01	ci left: 7.252675e-02	ci right 8.312075e-02	k: 777	n:10000
FAM129B   10000 perm   2 sec   (5149 perm/sec)   p_kst 7.770000e-02   p_cons 1.758000e-01   p_joint 1.300000e-01

Joint ci ratio: 8.956675e-02	ci left: 8.347212e-02	ci right 9.134831e-02	k: 1747	n:20000
Cons ci ratio: 5.940263e-02	ci left: 1.734620e-01	ci right 1.841316e-01	k: 3575	n:20000
KS ci ratio: 9.506608e-02	ci left: 7.461336e-02	ci right 8.210977e-02	k: 1566	n:20000
FAM129B   20000 perm   4 sec   (4474 perm/sec)   p_kst 7.830000e-02   p_cons 1.787500e-01   p_joint 8.735000e-02

Outputting figure to mutsig2_images.part000000000060/FAM129B.5_2317_20000_0.0783_0.17875_0.08735.png
                gene_name: FAM129B
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.078 
        ci_ks_bounds_left: 0.075 
       ci_ks_bounds_right: 0.082 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.087 
     ci_joint_bounds_left: 0.083 
    ci_joint_bounds_right: 0.091 

Current progress: 16 percent done.
FAM13A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.102156e-02	ci left: 2.251380e-01	ci right 2.418175e-01	k: 2334	n:10000
Cons ci ratio: 1.268230e-01	ci left: 8.164409e-02	ci right 9.279774e-02	k: 871	n:10000
KS ci ratio: 2.859208e-02	ci left: 6.432750e-01	ci right 6.620360e-01	k: 6527	n:10000
FAM13A   10000 perm   2 sec   (4795 perm/sec)   p_kst 6.527000e-01   p_cons 8.710000e-02   p_joint 2.334000e-01

Joint ci ratio: 5.030464e-02	ci left: 2.270067e-01	ci right 2.387711e-01	k: 4657	n:20000
Cons ci ratio: 9.147201e-02	ci left: 8.024030e-02	ci right 8.798112e-02	k: 1681	n:20000
KS ci ratio: 2.029658e-02	ci left: 6.442972e-01	ci right 6.575589e-01	k: 13019	n:20000
FAM13A   20000 perm   5 sec   (4172 perm/sec)   p_kst 6.509500e-01   p_cons 8.405000e-02   p_joint 2.328500e-01

Outputting figure to mutsig2_images.part000000000060/FAM13A.5_3201_20000_0.65095_0.08405_0.23285.png
                gene_name: FAM13A
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.084 
      ci_cons_bounds_left: 0.080 
     ci_cons_bounds_right: 0.088 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 18 percent done.
FAM159A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.497748e-02	ci left: 4.218634e-01	ci right 4.413764e-01	k: 4316	n:10000
Cons ci ratio: 5.373928e-02	ci left: 3.378646e-01	ci right 3.566244e-01	k: 3472	n:10000
KS ci ratio: 4.933629e-02	ci left: 3.773383e-01	ci right 3.965276e-01	k: 3869	n:10000
FAM159A   10000 perm   2 sec   (6110 perm/sec)   p_kst 3.869000e-01   p_cons 3.472000e-01   p_joint 4.316000e-01

Outputting figure to mutsig2_images.part000000000060/FAM159A.5_585_10000_0.3869_0.3472_0.4316.png
                gene_name: FAM159A
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 21 percent done.
FAM124B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.602602e-01	ci left: 9.594514e-03	ci right 1.389697e-02	k: 116	n:10000
Cons ci ratio: 6.656394e-02	ci left: 2.488526e-01	ci right 2.660889e-01	k: 2574	n:10000
KS ci ratio: 6.109146e-01	ci left: 2.859150e-03	ci right 5.442922e-03	k: 40	n:10000
FAM124B   10000 perm   2 sec   (4924 perm/sec)   p_kst 4.000000e-03   p_cons 2.574000e-01   p_joint 1.160000e-02

Joint ci ratio: 3.779363e-01	ci left: 4.341185e-03	ci right 6.406636e-03	k: 106	n:20000
Cons ci ratio: 4.740284e-02	ci left: 2.487223e-01	ci right 2.608490e-01	k: 5095	n:20000
KS ci ratio: 4.579519e-01	ci left: 2.817812e-03	ci right 4.531487e-03	k: 72	n:20000
FAM124B   20000 perm   5 sec   (4417 perm/sec)   p_kst 3.600000e-03   p_cons 2.547500e-01   p_joint 5.300000e-03

Joint ci ratio: 2.797986e-01	ci left: 5.591031e-03	ci right 7.439824e-03	k: 194	n:30000
Cons ci ratio: 3.865685e-02	ci left: 2.503069e-01	ci right 2.602072e-01	k: 7657	n:30000
KS ci ratio: 3.730653e-01	ci left: 2.984266e-03	ci right 4.381238e-03	k: 109	n:30000
FAM124B   30000 perm   7 sec   (4564 perm/sec)   p_kst 3.633333e-03   p_cons 2.552333e-01   p_joint 6.466667e-03

Joint ci ratio: 3.432433e-01	ci left: 2.693205e-03	ci right 3.830801e-03	k: 129	n:40000
Cons ci ratio: 3.330630e-02	ci left: 2.529218e-01	ci right 2.615134e-01	k: 10288	n:40000
KS ci ratio: 3.588064e-01	ci left: 2.442383e-03	ci right 3.531758e-03	k: 118	n:40000
FAM124B   40000 perm   9 sec   (4451 perm/sec)   p_kst 2.950000e-03   p_cons 2.572000e-01   p_joint 3.225000e-03

Joint ci ratio: 3.228373e-01	ci left: 2.466107e-03	ci right 3.433034e-03	k: 146	n:50000
Cons ci ratio: 2.984045e-02	ci left: 2.527361e-01	ci right 2.604121e-01	k: 12828	n:50000
KS ci ratio: 3.228373e-01	ci left: 2.466107e-03	ci right 3.433034e-03	k: 146	n:50000
FAM124B   50000 perm   11 sec   (4468 perm/sec)   p_kst 2.920000e-03   p_cons 2.565600e-01   p_joint 2.920000e-03

Joint ci ratio: 1.653216e-01	ci left: 8.515465e-03	ci right 1.006589e-02	k: 556	n:60000
Cons ci ratio: 2.712531e-02	ci left: 2.546850e-01	ci right 2.617051e-01	k: 15491	n:60000
KS ci ratio: 2.885404e-01	ci left: 2.624630e-03	ci right 3.524501e-03	k: 183	n:60000
FAM124B   60000 perm   13 sec   (4451 perm/sec)   p_kst 3.050000e-03   p_cons 2.581833e-01   p_joint 9.266667e-03

Joint ci ratio: 1.920856e-01	ci left: 5.346081e-03	ci right 6.495455e-03	k: 413	n:70000
Cons ci ratio: 2.510380e-02	ci left: 2.550889e-01	ci right 2.615883e-01	k: 18083	n:70000
KS ci ratio: 2.720538e-01	ci left: 2.555164e-03	ci right 3.372614e-03	k: 206	n:70000
FAM124B   70000 perm   16 sec   (4410 perm/sec)   p_kst 2.942857e-03   p_cons 2.583286e-01   p_joint 5.900000e-03

Joint ci ratio: 1.887501e-01	ci left: 4.856263e-03	ci right 5.880111e-03	k: 428	n:80000
Cons ci ratio: 2.343539e-02	ci left: 2.560664e-01	ci right 2.621511e-01	k: 20728	n:80000
KS ci ratio: 2.531831e-01	ci left: 2.609476e-03	ci right 3.377270e-03	k: 238	n:80000
FAM124B   80000 perm   18 sec   (4357 perm/sec)   p_kst 2.975000e-03   p_cons 2.591000e-01   p_joint 5.350000e-03

Joint ci ratio: 1.286463e-01	ci left: 9.553820e-03	ci right 1.087803e-02	k: 918	n:90000
Cons ci ratio: 2.209454e-02	ci left: 2.562508e-01	ci right 2.619869e-01	k: 23320	n:90000
KS ci ratio: 2.409039e-01	ci left: 2.580119e-03	ci right 3.296958e-03	k: 263	n:90000
FAM124B   90000 perm   21 sec   (4302 perm/sec)   p_kst 2.922222e-03   p_cons 2.591111e-01   p_joint 1.020000e-02

Joint ci ratio: 1.304428e-01	ci left: 8.365877e-03	ci right 9.542870e-03	k: 894	n:100000
Cons ci ratio: 2.095157e-02	ci left: 2.565658e-01	ci right 2.620081e-01	k: 25928	n:100000
KS ci ratio: 2.100702e-01	ci left: 3.105524e-03	ci right 3.843739e-03	k: 346	n:100000
FAM124B   100000 perm   24 sec   (4247 perm/sec)   p_kst 3.460000e-03   p_cons 2.592800e-01   p_joint 8.940000e-03

Joint ci ratio: 1.316884e-01	ci left: 7.464427e-03	ci right 8.525397e-03	k: 878	n:110000
Cons ci ratio: 2.057375e-02	ci left: 2.455769e-01	ci right 2.506909e-01	k: 27294	n:110000
KS ci ratio: 2.010088e-01	ci left: 3.099144e-03	ci right 3.800167e-03	k: 378	n:110000
FAM124B   110000 perm   26 sec   (4190 perm/sec)   p_kst 3.436364e-03   p_cons 2.481273e-01   p_joint 7.981818e-03

Joint ci ratio: 1.252233e-01	ci left: 7.592527e-03	ci right 8.614792e-03	k: 971	n:120000
Cons ci ratio: 1.969627e-02	ci left: 2.457164e-01	ci right 2.506125e-01	k: 29779	n:120000
KS ci ratio: 1.925576e-01	ci left: 3.110262e-03	ci right 3.780756e-03	k: 412	n:120000
FAM124B   120000 perm   29 sec   (4132 perm/sec)   p_kst 3.433333e-03   p_cons 2.481583e-01   p_joint 8.091667e-03

Joint ci ratio: 1.353019e-01	ci left: 5.981143e-03	ci right 6.856477e-03	k: 833	n:130000
Cons ci ratio: 1.888839e-02	ci left: 2.465054e-01	ci right 2.512135e-01	k: 32351	n:130000
KS ci ratio: 1.850899e-01	ci left: 3.120191e-03	ci right 3.763811e-03	k: 446	n:130000
FAM124B   130000 perm   32 sec   (4070 perm/sec)   p_kst 3.430769e-03   p_cons 2.488538e-01   p_joint 6.407692e-03

Joint ci ratio: 9.924189e-02	ci left: 1.047415e-02	ci right 1.157481e-02	k: 1542	n:140000
Cons ci ratio: 1.818867e-02	ci left: 2.468504e-01	ci right 2.513886e-01	k: 34876	n:140000
KS ci ratio: 1.778729e-01	ci left: 3.149607e-03	ci right 3.771238e-03	k: 483	n:140000
FAM124B   140000 perm   35 sec   (4017 perm/sec)   p_kst 3.450000e-03   p_cons 2.491143e-01   p_joint 1.101429e-02

Joint ci ratio: 1.006047e-01	ci left: 9.515632e-03	ci right 1.053011e-02	k: 1502	n:150000
Cons ci ratio: 1.755478e-02	ci left: 2.472917e-01	ci right 2.516779e-01	k: 37422	n:150000
KS ci ratio: 1.716046e-01	ci left: 3.169141e-03	ci right 3.770304e-03	k: 519	n:150000
FAM124B   150000 perm   38 sec   (3961 perm/sec)   p_kst 3.460000e-03   p_cons 2.494800e-01   p_joint 1.001333e-02

Joint ci ratio: 1.011473e-01	ci left: 8.829362e-03	ci right 9.776047e-03	k: 1487	n:160000
Cons ci ratio: 1.700952e-02	ci left: 2.470944e-01	ci right 2.513396e-01	k: 39874	n:160000
KS ci ratio: 1.766349e-01	ci left: 2.797670e-03	ci right 3.345583e-03	k: 490	n:160000
FAM124B   160000 perm   41 sec   (3907 perm/sec)   p_kst 3.062500e-03   p_cons 2.492125e-01   p_joint 9.293750e-03

Joint ci ratio: 9.953497e-02	ci left: 8.590936e-03	ci right 9.496514e-03	k: 1536	n:170000
Cons ci ratio: 1.651416e-02	ci left: 2.468753e-01	ci right 2.509921e-01	k: 42318	n:170000
KS ci ratio: 1.714745e-01	ci left: 2.801885e-03	ci right 3.332933e-03	k: 520	n:170000
FAM124B   170000 perm   44 sec   (3855 perm/sec)   p_kst 3.058824e-03   p_cons 2.489294e-01   p_joint 9.035294e-03

Joint ci ratio: 1.039471e-01	ci left: 7.431232e-03	ci right 8.251405e-03	k: 1410	n:180000
Cons ci ratio: 1.604611e-02	ci left: 2.469980e-01	ci right 2.509989e-01	k: 44819	n:180000
KS ci ratio: 1.661376e-01	ci left: 2.827138e-03	ci right 3.344627e-03	k: 554	n:180000
FAM124B   180000 perm   47 sec   (3800 perm/sec)   p_kst 3.077778e-03   p_cons 2.489944e-01   p_joint 7.833333e-03

Joint ci ratio: 1.095859e-01	ci left: 6.322735e-03	ci right 7.060859e-03	k: 1270	n:190000
Cons ci ratio: 1.563310e-02	ci left: 2.466946e-01	ci right 2.505868e-01	k: 47241	n:190000
KS ci ratio: 1.626608e-01	ci left: 2.799456e-03	ci right 3.300107e-03	k: 578	n:190000
FAM124B   190000 perm   51 sec   (3749 perm/sec)   p_kst 3.042105e-03   p_cons 2.486368e-01   p_joint 6.684211e-03

Joint ci ratio: 1.119323e-01	ci left: 5.753705e-03	ci right 6.440729e-03	k: 1218	n:200000
Cons ci ratio: 1.525572e-02	ci left: 2.462930e-01	ci right 2.500843e-01	k: 49637	n:200000
KS ci ratio: 1.584735e-01	ci left: 2.808257e-03	ci right 3.296323e-03	k: 609	n:200000
FAM124B   200000 perm   54 sec   (3699 perm/sec)   p_kst 3.045000e-03   p_cons 2.481850e-01   p_joint 6.090000e-03

Joint ci ratio: 1.244811e-01	ci left: 4.407333e-03	ci right 4.996943e-03	k: 986	n:210000
Cons ci ratio: 1.488310e-02	ci left: 2.464628e-01	ci right 2.501632e-01	k: 52145	n:210000
KS ci ratio: 1.555706e-01	ci left: 2.779747e-03	ci right 3.253183e-03	k: 632	n:210000
FAM124B   210000 perm   58 sec   (3650 perm/sec)   p_kst 3.009524e-03   p_cons 2.483095e-01   p_joint 4.695238e-03

Joint ci ratio: 1.286871e-01	ci left: 3.929639e-03	ci right 4.474461e-03	k: 923	n:220000
Cons ci ratio: 1.452732e-02	ci left: 2.468540e-01	ci right 2.504708e-01	k: 54705	n:220000
KS ci ratio: 1.523564e-01	ci left: 2.771394e-03	ci right 3.232764e-03	k: 659	n:220000
FAM124B   220000 perm   61 sec   (3601 perm/sec)   p_kst 2.995455e-03   p_cons 2.486591e-01   p_joint 4.195455e-03

Joint ci ratio: 1.021943e-01	ci left: 6.031549e-03	ci right 6.685333e-03	k: 1461	n:230000
Cons ci ratio: 1.420447e-02	ci left: 2.469865e-01	ci right 2.505242e-01	k: 57213	n:230000
KS ci ratio: 1.453552e-01	ci left: 2.923002e-03	ci right 3.385311e-03	k: 724	n:230000
FAM124B   230000 perm   65 sec   (3554 perm/sec)   p_kst 3.147826e-03   p_cons 2.487522e-01   p_joint 6.352174e-03

Joint ci ratio: 1.022431e-01	ci left: 5.776135e-03	ci right 6.402550e-03	k: 1460	n:240000
Cons ci ratio: 1.391262e-02	ci left: 2.468303e-01	ci right 2.502925e-01	k: 59654	n:240000
KS ci ratio: 1.428186e-01	ci left: 2.905636e-03	ci right 3.356495e-03	k: 750	n:240000
FAM124B   240000 perm   68 sec   (3505 perm/sec)   p_kst 3.125000e-03   p_cons 2.485583e-01   p_joint 6.083333e-03

Joint ci ratio: 1.022909e-01	ci left: 5.541158e-03	ci right 6.142386e-03	k: 1459	n:250000
Cons ci ratio: 1.362986e-02	ci left: 2.469107e-01	ci right 2.503031e-01	k: 62151	n:250000
KS ci ratio: 1.393350e-01	ci left: 2.936049e-03	ci right 3.379593e-03	k: 788	n:250000
FAM124B   250000 perm   72 sec   (3460 perm/sec)   p_kst 3.152000e-03   p_cons 2.486040e-01   p_joint 5.836000e-03

Joint ci ratio: 1.208447e-01	ci left: 3.787114e-03	ci right 4.277890e-03	k: 1047	n:260000
Cons ci ratio: 1.336079e-02	ci left: 2.470662e-01	ci right 2.503932e-01	k: 64669	n:260000
KS ci ratio: 1.368435e-01	ci left: 2.930809e-03	ci right 3.364999e-03	k: 817	n:260000
FAM124B   260000 perm   76 sec   (3415 perm/sec)   p_kst 3.142308e-03   p_cons 2.487269e-01   p_joint 4.026923e-03

Joint ci ratio: 1.183299e-01	ci left: 3.808534e-03	ci right 4.291096e-03	k: 1092	n:270000
Cons ci ratio: 1.310406e-02	ci left: 2.472958e-01	ci right 2.505614e-01	k: 67210	n:270000
KS ci ratio: 1.336135e-01	ci left: 2.965400e-03	ci right 3.393522e-03	k: 857	n:270000
FAM124B   270000 perm   80 sec   (3371 perm/sec)   p_kst 3.174074e-03   p_cons 2.489259e-01   p_joint 4.044444e-03

Joint ci ratio: 1.264324e-01	ci left: 3.205052e-03	ci right 3.641041e-03	k: 957	n:280000
Cons ci ratio: 1.285704e-02	ci left: 2.476414e-01	ci right 2.508495e-01	k: 69788	n:280000
KS ci ratio: 1.314862e-01	ci left: 2.956176e-03	ci right 3.375640e-03	k: 885	n:280000
FAM124B   280000 perm   84 sec   (3330 perm/sec)   p_kst 3.160714e-03   p_cons 2.492429e-01   p_joint 3.417857e-03

Joint ci ratio: 1.245622e-01	ci left: 3.191392e-03	ci right 3.618627e-03	k: 986	n:290000
Cons ci ratio: 1.263162e-02	ci left: 2.477228e-01	ci right 2.508753e-01	k: 72296	n:290000
KS ci ratio: 1.291741e-01	ci left: 2.960987e-03	ci right 3.373179e-03	k: 917	n:290000
FAM124B   290000 perm   88 sec   (3289 perm/sec)   p_kst 3.162069e-03   p_cons 2.492966e-01   p_joint 3.400000e-03

Joint ci ratio: 1.230770e-01	ci left: 3.162531e-03	ci right 3.580487e-03	k: 1010	n:300000
Cons ci ratio: 1.242118e-02	ci left: 2.476928e-01	ci right 2.507920e-01	k: 74772	n:300000
KS ci ratio: 1.277921e-01	ci left: 2.926808e-03	ci right 3.329552e-03	k: 937	n:300000
FAM124B   300000 perm   92 sec   (3248 perm/sec)   p_kst 3.123333e-03   p_cons 2.492400e-01   p_joint 3.366667e-03

Joint ci ratio: 1.204238e-01	ci left: 3.201258e-03	ci right 3.614562e-03	k: 1055	n:310000
Cons ci ratio: 1.221883e-02	ci left: 2.477296e-01	ci right 2.507783e-01	k: 77268	n:310000
KS ci ratio: 1.251497e-01	ci left: 2.957348e-03	ci right 3.355256e-03	k: 977	n:310000
FAM124B   310000 perm   97 sec   (3209 perm/sec)   p_kst 3.151613e-03   p_cons 2.492516e-01   p_joint 3.403226e-03

Joint ci ratio: 1.184763e-01	ci left: 3.207327e-03	ci right 3.614248e-03	k: 1090	n:320000
Cons ci ratio: 1.203107e-02	ci left: 2.476085e-01	ci right 2.506086e-01	k: 79714	n:320000
KS ci ratio: 1.229072e-01	ci left: 2.973942e-03	ci right 3.366391e-03	k: 1013	n:320000
FAM124B   320000 perm   101 sec   (3171 perm/sec)   p_kst 3.165625e-03   p_cons 2.491063e-01   p_joint 3.406250e-03

Joint ci ratio: 1.165165e-01	ci left: 3.218962e-03	ci right 3.620139e-03	k: 1127	n:330000
Cons ci ratio: 1.184192e-02	ci left: 2.478035e-01	ci right 2.507585e-01	k: 82262	n:330000
KS ci ratio: 1.211869e-01	ci left: 2.969018e-03	ci right 3.354940e-03	k: 1042	n:330000
FAM124B   330000 perm   105 sec   (3133 perm/sec)   p_kst 3.157576e-03   p_cons 2.492788e-01   p_joint 3.415152e-03

Joint ci ratio: 9.823271e-02	ci left: 4.432690e-03	ci right 4.893462e-03	k: 1584	n:340000
Cons ci ratio: 1.166041e-02	ci left: 2.480197e-01	ci right 2.509316e-01	k: 84821	n:340000
KS ci ratio: 1.196490e-01	ci left: 2.958712e-03	ci right 3.338069e-03	k: 1069	n:340000
FAM124B   340000 perm   110 sec   (3096 perm/sec)   p_kst 3.144118e-03   p_cons 2.494735e-01   p_joint 4.658824e-03

Joint ci ratio: 1.069611e-01	ci left: 3.618320e-03	ci right 4.029962e-03	k: 1337	n:350000
Cons ci ratio: 1.148954e-02	ci left: 2.481412e-01	ci right 2.510115e-01	k: 87351	n:350000
KS ci ratio: 1.159110e-01	ci left: 3.068297e-03	ci right 3.448573e-03	k: 1139	n:350000
FAM124B   350000 perm   114 sec   (3061 perm/sec)   p_kst 3.254286e-03   p_cons 2.495743e-01   p_joint 3.820000e-03

Joint ci ratio: 8.541426e-02	ci left: 5.568135e-03	ci right 6.067648e-03	k: 2093	n:360000
Cons ci ratio: 1.133024e-02	ci left: 2.481148e-01	ci right 2.509448e-01	k: 89830	n:360000
KS ci ratio: 1.144157e-01	ci left: 3.063998e-03	ci right 3.438512e-03	k: 1169	n:360000
FAM124B   360000 perm   119 sec   (3027 perm/sec)   p_kst 3.247222e-03   p_cons 2.495278e-01   p_joint 5.813889e-03

Joint ci ratio: 8.449267e-02	ci left: 5.539324e-03	ci right 6.030627e-03	k: 2139	n:370000
Cons ci ratio: 1.118047e-02	ci left: 2.479876e-01	ci right 2.507785e-01	k: 92271	n:370000
KS ci ratio: 1.125542e-01	ci left: 3.083603e-03	ci right 3.453974e-03	k: 1208	n:370000
FAM124B   370000 perm   124 sec   (2992 perm/sec)   p_kst 3.264865e-03   p_cons 2.493811e-01   p_joint 5.781081e-03

Joint ci ratio: 6.750937e-02	ci left: 8.497725e-03	ci right 9.094012e-03	k: 3341	n:380000
Cons ci ratio: 1.072488e-02	ci left: 2.587188e-01	ci right 2.615111e-01	k: 98843	n:380000
KS ci ratio: 1.115909e-01	ci left: 3.056167e-03	ci right 3.419894e-03	k: 1229	n:380000
FAM124B   380000 perm   128 sec   (2959 perm/sec)   p_kst 3.234211e-03   p_cons 2.601132e-01   p_joint 8.792105e-03

Joint ci ratio: 6.663774e-02	ci left: 8.501692e-03	ci right 9.090257e-03	k: 3429	n:390000
Cons ci ratio: 1.058326e-02	ci left: 2.588542e-01	ci right 2.616109e-01	k: 101490	n:390000
KS ci ratio: 1.101671e-01	ci left: 3.057580e-03	ci right 3.416531e-03	k: 1261	n:390000
FAM124B   390000 perm   133 sec   (2925 perm/sec)   p_kst 3.233333e-03   p_cons 2.602308e-01   p_joint 8.792308e-03

Joint ci ratio: 6.953526e-02	ci left: 7.608311e-03	ci right 8.158853e-03	k: 3152	n:400000
Cons ci ratio: 1.045335e-02	ci left: 2.587535e-01	ci right 2.614750e-01	k: 104045	n:400000
KS ci ratio: 1.087543e-01	ci left: 3.061382e-03	ci right 3.415875e-03	k: 1294	n:400000
FAM124B   400000 perm   138 sec   (2892 perm/sec)   p_kst 3.235000e-03   p_cons 2.601125e-01   p_joint 7.880000e-03

Joint ci ratio: 6.886295e-02	ci left: 7.571341e-03	ci right 8.113698e-03	k: 3214	n:410000
Cons ci ratio: 1.032280e-02	ci left: 2.588551e-01	ci right 2.615434e-01	k: 106681	n:410000
KS ci ratio: 1.076796e-01	ci left: 3.048411e-03	ci right 3.397693e-03	k: 1320	n:410000
FAM124B   410000 perm   143 sec   (2861 perm/sec)   p_kst 3.219512e-03   p_cons 2.601976e-01   p_joint 7.839024e-03

Joint ci ratio: 7.086230e-02	ci left: 6.976927e-03	ci right 7.491811e-03	k: 3037	n:420000
Cons ci ratio: 1.019759e-02	ci left: 2.589306e-01	ci right 2.615870e-01	k: 109308	n:420000
KS ci ratio: 1.058506e-01	ci left: 3.082432e-03	ci right 3.429239e-03	k: 1366	n:420000
FAM124B   420000 perm   148 sec   (2829 perm/sec)   p_kst 3.252381e-03   p_cons 2.602571e-01   p_joint 7.230952e-03

Joint ci ratio: 7.019658e-02	ci left: 6.947174e-03	ci right 7.454850e-03	k: 3095	n:430000
Cons ci ratio: 1.008122e-02	ci left: 2.588357e-01	ci right 2.614606e-01	k: 111863	n:430000
KS ci ratio: 1.051242e-01	ci left: 3.053765e-03	ci right 3.394844e-03	k: 1385	n:430000
FAM124B   430000 perm   154 sec   (2800 perm/sec)   p_kst 3.220930e-03   p_cons 2.601465e-01   p_joint 7.197674e-03

Joint ci ratio: 6.942743e-02	ci left: 6.943364e-03	ci right 7.444977e-03	k: 3164	n:440000
Cons ci ratio: 9.968852e-03	ci left: 2.587407e-01	ci right 2.613352e-01	k: 114416	n:440000
KS ci ratio: 1.039313e-01	ci left: 3.055187e-03	ci right 3.392316e-03	k: 1417	n:440000
FAM124B   440000 perm   159 sec   (2771 perm/sec)   p_kst 3.220455e-03   p_cons 2.600364e-01   p_joint 7.190909e-03

Joint ci ratio: 6.868302e-02	ci left: 6.939752e-03	ci right 7.435514e-03	k: 3233	n:450000
Cons ci ratio: 9.860961e-03	ci left: 2.586190e-01	ci right 2.611841e-01	k: 116955	n:450000
KS ci ratio: 1.030279e-01	ci left: 3.041411e-03	ci right 3.373925e-03	k: 1442	n:450000
FAM124B   450000 perm   164 sec   (2741 perm/sec)   p_kst 3.204444e-03   p_cons 2.599000e-01   p_joint 7.184444e-03

Joint ci ratio: 7.137117e-02	ci left: 6.282612e-03	ci right 6.749723e-03	k: 2996	n:460000
Cons ci ratio: 9.753519e-03	ci left: 2.586200e-01	ci right 2.611569e-01	k: 119548	n:460000
KS ci ratio: 1.017314e-01	ci left: 3.053669e-03	ci right 3.383072e-03	k: 1479	n:460000
FAM124B   460000 perm   170 sec   (2712 perm/sec)   p_kst 3.215217e-03   p_cons 2.598870e-01   p_joint 6.513043e-03

Joint ci ratio: 7.106657e-02	ci left: 6.203265e-03	ci right 6.662426e-03	k: 3022	n:470000
Cons ci ratio: 9.649515e-03	ci left: 2.586211e-01	ci right 2.611308e-01	k: 122141	n:470000
KS ci ratio: 1.009510e-01	ci left: 3.036392e-03	ci right 3.361269e-03	k: 1502	n:470000
FAM124B   470000 perm   175 sec   (2681 perm/sec)   p_kst 3.195745e-03   p_cons 2.598745e-01   p_joint 6.429787e-03

Joint ci ratio: 7.105954e-02	ci left: 6.076062e-03	ci right 6.525762e-03	k: 3023	n:480000
Cons ci ratio: 9.544323e-03	ci left: 2.588011e-01	ci right 2.612851e-01	k: 124820	n:480000
KS ci ratio: 1.001883e-01	ci left: 3.019844e-03	ci right 3.340366e-03	k: 1525	n:480000
FAM124B   480000 perm   181 sec   (2653 perm/sec)   p_kst 3.177083e-03   p_cons 2.600417e-01   p_joint 6.297917e-03

Joint ci ratio: 7.031924e-02	ci left: 6.080365e-03	ci right 6.525503e-03	k: 3087	n:490000
Cons ci ratio: 9.446803e-03	ci left: 2.587987e-01	ci right 2.612572e-01	k: 127413	n:490000
KS ci ratio: 9.928196e-02	ci left: 3.013932e-03	ci right 3.330763e-03	k: 1553	n:490000
FAM124B   490000 perm   187 sec   (2625 perm/sec)   p_kst 3.169388e-03   p_cons 2.600265e-01   p_joint 6.300000e-03

Outputting figure to mutsig2_images.part000000000060/FAM124B.4_1467_490000_0.0031694_0.26003_0.0063.png
                gene_name: FAM124B
               theta_stop: 0.099 
                    nperm: 490000 
                     p_ks: 0.0032 
        ci_ks_bounds_left: 0.0030 
       ci_ks_bounds_right: 0.0033 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.0063 
     ci_joint_bounds_left: 0.0061 
    ci_joint_bounds_right: 0.0065 

Current progress: 24 percent done.
FAM13C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.236267e-02	ci left: 4.513922e-01	ci right 4.710304e-01	k: 4612	n:10000
Cons ci ratio: 4.809090e-02	ci left: 3.894823e-01	ci right 4.087765e-01	k: 3991	n:10000
KS ci ratio: 5.116258e-02	ci left: 3.603273e-01	ci right 3.793486e-01	k: 3698	n:10000
FAM13C   10000 perm   2 sec   (5813 perm/sec)   p_kst 3.698000e-01   p_cons 3.991000e-01   p_joint 4.612000e-01

Outputting figure to mutsig2_images.part000000000060/FAM13C.4_1814_10000_0.3698_0.3991_0.4612.png
                gene_name: FAM13C
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 26 percent done.
FAM154A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.742002e-02	ci left: 3.086781e-01	ci right 3.270281e-01	k: 3178	n:10000
KS ci ratio: 2.486315e-02	ci left: 7.041236e-01	ci right 7.219521e-01	k: 7131	n:10000
FAM154A   10000 perm   2 sec   (5798 perm/sec)   p_kst 7.131000e-01   p_cons 3.178000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000060/FAM154A.4_1441_10000_0.7131_0.3178_1.png
                gene_name: FAM154A
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 29 percent done.
FAM110B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.932590e-02	ci left: 3.774378e-01	ci right 3.966281e-01	k: 3870	n:10000
Cons ci ratio: 2.619972e-02	ci left: 6.820403e-01	ci right 7.002483e-01	k: 6912	n:10000
KS ci ratio: 5.997850e-02	ci left: 2.902347e-01	ci right 3.082824e-01	k: 2992	n:10000
FAM110B   10000 perm   2 sec   (6520 perm/sec)   p_kst 2.992000e-01   p_cons 6.912000e-01   p_joint 3.870000e-01

Outputting figure to mutsig2_images.part000000000060/FAM110B.3_1117_10000_0.2992_0.6912_0.387.png
                gene_name: FAM110B
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 32 percent done.
FAM111B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.519441e-01	ci left: 5.764078e-02	ci right 6.721608e-02	k: 623	n:10000
Cons ci ratio: 2.016804e-01	ci left: 3.271977e-02	ci right 4.015343e-02	k: 363	n:10000
KS ci ratio: 1.316798e-01	ci left: 7.601602e-02	ci right 8.682930e-02	k: 813	n:10000
FAM111B   10000 perm   2 sec   (5912 perm/sec)   p_kst 8.130000e-02   p_cons 3.630000e-02   p_joint 6.230000e-02

Joint ci ratio: 1.161276e-01	ci left: 5.076176e-02	ci right 5.706873e-02	k: 1077	n:20000
Cons ci ratio: 1.421072e-01	ci left: 3.404014e-02	ci right 3.929568e-02	k: 732	n:20000
KS ci ratio: 9.390070e-02	ci left: 7.637423e-02	ci right 8.394836e-02	k: 1602	n:20000
FAM111B   20000 perm   4 sec   (5288 perm/sec)   p_kst 8.010000e-02   p_cons 3.660000e-02   p_joint 5.385000e-02

Joint ci ratio: 1.208790e-01	ci left: 3.181601e-02	ci right 3.594157e-02	k: 1015	n:30000
Cons ci ratio: 1.158397e-01	ci left: 3.463305e-02	ci right 3.892393e-02	k: 1102	n:30000
KS ci ratio: 7.601052e-02	ci left: 7.832967e-02	ci right 8.455167e-02	k: 2442	n:30000
FAM111B   30000 perm   6 sec   (5056 perm/sec)   p_kst 8.140000e-02   p_cons 3.673333e-02   p_joint 3.383333e-02

Joint ci ratio: 1.313685e-01	ci left: 2.034284e-02	ci right 2.322717e-02	k: 870	n:40000
Cons ci ratio: 1.006645e-01	ci left: 3.468345e-02	ci right 3.838423e-02	k: 1460	n:40000
KS ci ratio: 6.644358e-02	ci left: 7.738405e-02	ci right 8.272710e-02	k: 3201	n:40000
FAM111B   40000 perm   8 sec   (4902 perm/sec)   p_kst 8.002500e-02   p_cons 3.650000e-02   p_joint 2.175000e-02

Joint ci ratio: 1.459611e-01	ci left: 1.318122e-02	ci right 1.527573e-02	k: 710	n:50000
Cons ci ratio: 8.956113e-02	ci left: 3.524498e-02	ci right 3.856907e-02	k: 1844	n:50000
KS ci ratio: 5.982395e-02	ci left: 7.670934e-02	ci right 8.145966e-02	k: 3953	n:50000
FAM111B   50000 perm   10 sec   (4775 perm/sec)   p_kst 7.906000e-02   p_cons 3.688000e-02   p_joint 1.420000e-02

Joint ci ratio: 1.327084e-01	ci left: 1.338136e-02	ci right 1.529937e-02	k: 859	n:60000
Cons ci ratio: 8.635875e-02	ci left: 3.176442e-02	ci right 3.464763e-02	k: 1991	n:60000
KS ci ratio: 5.488718e-02	ci left: 7.619546e-02	ci right 8.051210e-02	k: 4700	n:60000
FAM111B   60000 perm   13 sec   (4662 perm/sec)   p_kst 7.833333e-02   p_cons 3.318333e-02   p_joint 1.431667e-02

Joint ci ratio: 1.260460e-01	ci left: 1.276889e-02	ci right 1.450034e-02	k: 953	n:70000
Cons ci ratio: 7.995276e-02	ci left: 3.187103e-02	ci right 3.453928e-02	k: 2323	n:70000
KS ci ratio: 5.099499e-02	ci left: 7.585435e-02	ci right 7.983787e-02	k: 5448	n:70000
FAM111B   70000 perm   15 sec   (4565 perm/sec)   p_kst 7.782857e-02   p_cons 3.318571e-02   p_joint 1.361429e-02

Joint ci ratio: 1.142570e-01	ci left: 1.367089e-02	ci right 1.533959e-02	k: 1159	n:80000
Cons ci ratio: 7.530375e-02	ci left: 3.152739e-02	ci right 3.400664e-02	k: 2620	n:80000
KS ci ratio: 4.779071e-02	ci left: 7.571807e-02	ci right 7.943763e-02	k: 6205	n:80000
FAM111B   80000 perm   18 sec   (4469 perm/sec)   p_kst 7.756250e-02   p_cons 3.275000e-02   p_joint 1.448750e-02

Joint ci ratio: 8.408720e-02	ci left: 2.258544e-02	ci right 2.457877e-02	k: 2121	n:90000
Cons ci ratio: 7.126773e-02	ci left: 3.136196e-02	ci right 3.369052e-02	k: 2926	n:90000
KS ci ratio: 4.503219e-02	ci left: 7.590416e-02	ci right 7.941201e-02	k: 6988	n:90000
FAM111B   90000 perm   21 sec   (4387 perm/sec)   p_kst 7.764444e-02   p_cons 3.251111e-02   p_joint 2.356667e-02

Outputting figure to mutsig2_images.part000000000060/FAM111B.3_2213_90000_0.077644_0.032511_0.023567.png
                gene_name: FAM111B
               theta_stop: 0.084 
                    nperm: 90000 
                     p_ks: 0.078 
        ci_ks_bounds_left: 0.076 
       ci_ks_bounds_right: 0.079 
                   p_cons: 0.033 
      ci_cons_bounds_left: 0.031 
     ci_cons_bounds_right: 0.034 
                  p_joint: 0.024 
     ci_joint_bounds_left: 0.023 
    ci_joint_bounds_right: 0.025 

Current progress: 34 percent done.
FAM113B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.698407e-02	ci left: 1.614075e-01	ci right 1.761860e-01	k: 1687	n:10000
Cons ci ratio: 9.005031e-02	ci left: 1.520792e-01	ci right 1.665198e-01	k: 1592	n:10000
KS ci ratio: 5.941142e-02	ci left: 2.941996e-01	ci right 3.123152e-01	k: 3032	n:10000
FAM113B   10000 perm   2 sec   (6187 perm/sec)   p_kst 3.032000e-01   p_cons 1.592000e-01   p_joint 1.687000e-01

Outputting figure to mutsig2_images.part000000000060/FAM113B.3_1303_10000_0.3032_0.1592_0.1687.png
                gene_name: FAM113B
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.18 

Current progress: 37 percent done.
FAM114A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.590188e-03	ci left: 9.692095e-01	ci right 9.757113e-01	k: 9726	n:10000
KS ci ratio: 1.936165e-02	ci left: 7.959800e-01	ci right 8.116426e-01	k: 8039	n:10000
FAM114A2   10000 perm   2 sec   (6212 perm/sec)   p_kst 8.039000e-01   p_cons 9.726000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000060/FAM114A2.3_1570_10000_0.8039_0.9726_1.png
                gene_name: FAM114A2
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 39 percent done.
FAM120C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.342233e-02	ci left: 5.692514e-01	ci right 5.887025e-01	k: 5790	n:10000
Cons ci ratio: 3.624069e-02	ci left: 5.292700e-01	ci right 5.489072e-01	k: 5391	n:10000
KS ci ratio: 3.841808e-02	ci left: 5.001504e-01	ci right 5.198437e-01	k: 5100	n:10000
FAM120C   10000 perm   2 sec   (5400 perm/sec)   p_kst 5.100000e-01   p_cons 5.391000e-01   p_joint 5.790000e-01

Outputting figure to mutsig2_images.part000000000060/FAM120C.3_3377_10000_0.51_0.5391_0.579.png
                gene_name: FAM120C
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 42 percent done.
FAM126B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.141213e-02	ci left: 1.804823e-01	ci right 1.958998e-01	k: 1881	n:10000
Cons ci ratio: 5.055356e-02	ci left: 3.658968e-01	ci right 3.849758e-01	k: 3754	n:10000
KS ci ratio: 9.829904e-02	ci left: 1.304150e-01	ci right 1.439971e-01	k: 1371	n:10000
FAM126B   10000 perm   2 sec   (5930 perm/sec)   p_kst 1.371000e-01   p_cons 3.754000e-01   p_joint 1.881000e-01

Outputting figure to mutsig2_images.part000000000060/FAM126B.3_1633_10000_0.1371_0.3754_0.1881.png
                gene_name: FAM126B
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 45 percent done.
FAM129C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.593649e-02	ci left: 8.512085e-01	ci right 8.649822e-01	k: 8582	n:10000
KS ci ratio: 4.259349e-02	ci left: 4.486973e-01	ci right 4.683269e-01	k: 4585	n:10000
FAM129C   10000 perm   2 sec   (5743 perm/sec)   p_kst 4.585000e-01   p_cons 8.582000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000060/FAM129C.3_2275_10000_0.4585_0.8582_1.png
                gene_name: FAM129C
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 47 percent done.
FAM134A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.407281e-02	ci left: 3.350832e-01	ci right 3.538075e-01	k: 3444	n:10000
Cons ci ratio: 3.838735e-02	ci left: 5.005505e-01	ci right 5.202435e-01	k: 5104	n:10000
KS ci ratio: 5.436136e-02	ci left: 3.326995e-01	ci right 3.513926e-01	k: 3420	n:10000
FAM134A   10000 perm   2 sec   (5967 perm/sec)   p_kst 3.420000e-01   p_cons 5.104000e-01   p_joint 3.444000e-01

Outputting figure to mutsig2_images.part000000000060/FAM134A.3_1668_10000_0.342_0.5104_0.3444.png
                gene_name: FAM134A
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 50 percent done.
FAM135A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.388154e-02	ci left: 7.204755e-01	ci right 7.379908e-01	k: 7293	n:10000
Cons ci ratio: 5.179401e-02	ci left: 3.546598e-01	ci right 3.736194e-01	k: 3641	n:10000
KS ci ratio: 1.031596e-02	ci left: 9.303005e-01	ci right 9.400441e-01	k: 9353	n:10000
FAM135A   10000 perm   2 sec   (4967 perm/sec)   p_kst 9.353000e-01   p_cons 3.641000e-01   p_joint 7.293000e-01

Outputting figure to mutsig2_images.part000000000060/FAM135A.3_4706_10000_0.9353_0.3641_0.7293.png
                gene_name: FAM135A
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 53 percent done.
FAM154B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.629906e-02	ci left: 5.284690e-01	ci right 5.481087e-01	k: 5383	n:10000
KS ci ratio: 3.656271e-02	ci left: 5.248649e-01	ci right 5.445149e-01	k: 5347	n:10000
FAM154B   10000 perm   2 sec   (6232 perm/sec)   p_kst 5.347000e-01   p_cons 5.383000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000060/FAM154B.3_1209_10000_0.5347_0.5383_1.png
                gene_name: FAM154B
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 55 percent done.
FAM160A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.172700e-01	ci left: 9.457666e-02	ci right 1.064572e-01	k: 1004	n:10000
Cons ci ratio: 1.779024e-01	ci left: 4.216838e-02	ci right 5.049848e-02	k: 462	n:10000
KS ci ratio: 7.712279e-02	ci left: 1.973215e-01	ci right 2.132506e-01	k: 2052	n:10000
FAM160A2   10000 perm   2 sec   (5521 perm/sec)   p_kst 2.052000e-01   p_cons 4.620000e-02   p_joint 1.004000e-01

Joint ci ratio: 1.009147e-01	ci left: 6.659926e-02	ci right 7.372632e-02	k: 1402	n:20000
Cons ci ratio: 1.250222e-01	ci left: 4.391389e-02	ci right 4.981875e-02	k: 936	n:20000
KS ci ratio: 5.478665e-02	ci left: 1.981862e-01	ci right 2.094001e-01	k: 4075	n:20000
FAM160A2   20000 perm   4 sec   (4965 perm/sec)   p_kst 2.037500e-01   p_cons 4.680000e-02   p_joint 7.010000e-02

Joint ci ratio: 9.429574e-02	ci left: 5.189267e-02	ci right 5.706070e-02	k: 1633	n:30000
Cons ci ratio: 1.034592e-01	ci left: 4.329927e-02	ci right 4.805588e-02	k: 1369	n:30000
KS ci ratio: 4.481155e-02	ci left: 1.986590e-01	ci right 2.077986e-01	k: 6096	n:30000
FAM160A2   30000 perm   6 sec   (4728 perm/sec)   p_kst 2.032000e-01   p_cons 4.563333e-02   p_joint 5.443333e-02

Joint ci ratio: 7.479882e-02	ci left: 6.184174e-02	ci right 6.667176e-02	k: 2569	n:40000
Cons ci ratio: 8.815854e-02	ci left: 4.501985e-02	ci right 4.919622e-02	k: 1883	n:40000
KS ci ratio: 3.865986e-02	ci left: 2.005068e-01	ci right 2.084361e-01	k: 8178	n:40000
FAM160A2   40000 perm   9 sec   (4578 perm/sec)   p_kst 2.044500e-01   p_cons 4.707500e-02   p_joint 6.422500e-02

Outputting figure to mutsig2_images.part000000000060/FAM160A2.3_3005_40000_0.20445_0.047075_0.064225.png
                gene_name: FAM160A2
               theta_stop: 0.088 
                    nperm: 40000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.047 
      ci_cons_bounds_left: 0.045 
     ci_cons_bounds_right: 0.049 
                  p_joint: 0.064 
     ci_joint_bounds_left: 0.062 
    ci_joint_bounds_right: 0.067 

Current progress: 58 percent done.
FAM160B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.701526e-02	ci left: 4.003376e-01	ci right 4.197148e-01	k: 4100	n:10000
Cons ci ratio: 1.391793e-02	ci left: 8.817580e-01	ci right 8.942150e-01	k: 8881	n:10000
KS ci ratio: 6.457014e-02	ci left: 2.605249e-01	ci right 2.780097e-01	k: 2692	n:10000
FAM160B1   10000 perm   2 sec   (5785 perm/sec)   p_kst 2.692000e-01   p_cons 8.881000e-01   p_joint 4.100000e-01

Outputting figure to mutsig2_images.part000000000060/FAM160B1.3_2395_10000_0.2692_0.8881_0.41.png
                gene_name: FAM160B1
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 61 percent done.
FAM113A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.295152e-02	ci left: 7.360335e-01	ci right 7.532238e-01	k: 7447	n:10000
Cons ci ratio: 2.312049e-02	ci left: 7.332037e-01	ci right 7.504552e-01	k: 7419	n:10000
KS ci ratio: 4.468541e-02	ci left: 4.250540e-01	ci right 4.445840e-01	k: 4348	n:10000
FAM113A   10000 perm   1 sec   (6825 perm/sec)   p_kst 4.348000e-01   p_cons 7.419000e-01   p_joint 7.447000e-01

Outputting figure to mutsig2_images.part000000000060/FAM113A.2_1393_10000_0.4348_0.7419_0.7447.png
                gene_name: FAM113A
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.75 

Current progress: 63 percent done.
FAM114A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.411746e-02	ci left: 7.165376e-01	ci right 7.341309e-01	k: 7254	n:10000
Cons ci ratio: 8.595771e-03	ci left: 9.499184e-01	ci right 9.582145e-01	k: 9542	n:10000
KS ci ratio: 5.879861e-02	ci left: 2.985619e-01	ci right 3.167503e-01	k: 3076	n:10000
FAM114A1   10000 perm   2 sec   (6293 perm/sec)   p_kst 3.076000e-01   p_cons 9.542000e-01   p_joint 7.254000e-01

Outputting figure to mutsig2_images.part000000000060/FAM114A1.2_1744_10000_0.3076_0.9542_0.7254.png
                gene_name: FAM114A1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 66 percent done.
FAM117A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.445118e-02	ci left: 8.738790e-01	ci right 8.866985e-01	k: 8804	n:10000
Cons ci ratio: 4.600038e-02	ci left: 4.108988e-01	ci right 4.303474e-01	k: 4206	n:10000
KS ci ratio: 9.338490e-02	ci left: 1.427601e-01	ci right 1.568446e-01	k: 1497	n:10000
FAM117A   10000 perm   2 sec   (6593 perm/sec)   p_kst 1.497000e-01   p_cons 4.206000e-01   p_joint 8.804000e-01

Outputting figure to mutsig2_images.part000000000060/FAM117A.2_1394_10000_0.1497_0.4206_0.8804.png
                gene_name: FAM117A
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.89 

Current progress: 68 percent done.
FAM118B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.531683e-02	ci left: 3.249540e-01	ci right 3.435426e-01	k: 3342	n:10000
Cons ci ratio: 3.092077e-02	ci left: 6.067866e-01	ci right 6.259455e-01	k: 6164	n:10000
KS ci ratio: 1.096588e-01	ci left: 1.070534e-01	ci right 1.195729e-01	k: 1132	n:10000
FAM118B   10000 perm   1 sec   (7025 perm/sec)   p_kst 1.132000e-01   p_cons 6.164000e-01   p_joint 3.342000e-01

Joint ci ratio: 3.954054e-02	ci left: 3.229362e-01	ci right 3.360134e-01	k: 6589	n:20000
Cons ci ratio: 2.203680e-02	ci left: 6.059078e-01	ci right 6.194594e-01	k: 12254	n:20000
KS ci ratio: 7.638710e-02	ci left: 1.118880e-01	ci right 1.208239e-01	k: 2326	n:20000
FAM118B   20000 perm   3 sec   (6196 perm/sec)   p_kst 1.163000e-01   p_cons 6.127000e-01   p_joint 3.294500e-01

Outputting figure to mutsig2_images.part000000000060/FAM118B.2_1084_20000_0.1163_0.6127_0.32945.png
                gene_name: FAM118B
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 71 percent done.
FAM123A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.467933e-02	ci left: 5.511066e-01	ci right 5.706579e-01	k: 5609	n:10000
Cons ci ratio: 5.748628e-02	ci left: 3.081821e-01	ci right 3.265244e-01	k: 3173	n:10000
KS ci ratio: 2.148471e-02	ci left: 7.606116e-01	ci right 7.772314e-01	k: 7690	n:10000
FAM123A   10000 perm   2 sec   (6460 perm/sec)   p_kst 7.690000e-01   p_cons 3.173000e-01   p_joint 5.609000e-01

Outputting figure to mutsig2_images.part000000000060/FAM123A.2_2020_10000_0.769_0.3173_0.5609.png
                gene_name: FAM123A
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 74 percent done.
FAM126A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.184997e-02	ci left: 3.541627e-01	ci right 3.731168e-01	k: 3636	n:10000
Cons ci ratio: 8.935079e-02	ci left: 1.541405e-01	ci right 1.686573e-01	k: 1613	n:10000
KS ci ratio: 7.470260e-02	ci left: 2.077708e-01	ci right 2.239950e-01	k: 2158	n:10000
FAM126A   10000 perm   2 sec   (6408 perm/sec)   p_kst 2.158000e-01   p_cons 1.613000e-01   p_joint 3.636000e-01

Outputting figure to mutsig2_images.part000000000060/FAM126A.2_1606_10000_0.2158_0.1613_0.3636.png
                gene_name: FAM126A
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 76 percent done.
FAM127B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.942548e-02	ci left: 2.941004e-01	ci right 3.122144e-01	k: 3031	n:10000
KS ci ratio: 1.205181e-02	ci left: 9.080250e-01	ci right 9.191326e-01	k: 9137	n:10000
FAM127B   10000 perm   1 sec   (7502 perm/sec)   p_kst 9.137000e-01   p_cons 3.031000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000060/FAM127B.2_410_10000_0.9137_0.3031_1.png
                gene_name: FAM127B
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
FAM131B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.650599e-02	ci left: 3.156236e-01	ci right 3.340785e-01	k: 3248	n:10000
Cons ci ratio: 1.293953e-02	ci left: 8.957999e-01	ci right 9.075649e-01	k: 9018	n:10000
KS ci ratio: 1.161806e-01	ci left: 9.623212e-02	ci right 1.082007e-01	k: 1021	n:10000
FAM131B   10000 perm   2 sec   (6627 perm/sec)   p_kst 1.021000e-01   p_cons 9.018000e-01   p_joint 3.248000e-01

Joint ci ratio: 2.498480e-02	ci left: 5.447755e-01	ci right 5.586094e-01	k: 11034	n:20000
Cons ci ratio: 8.958594e-03	ci left: 9.013108e-01	ci right 9.094709e-01	k: 18109	n:20000
KS ci ratio: 8.098908e-02	ci left: 1.005877e-01	ci right 1.091276e-01	k: 2096	n:20000
FAM131B   20000 perm   3 sec   (5894 perm/sec)   p_kst 1.048000e-01   p_cons 9.054500e-01   p_joint 5.517000e-01

Outputting figure to mutsig2_images.part000000000060/FAM131B.2_1111_20000_0.1048_0.90545_0.5517.png
                gene_name: FAM131B
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 82 percent done.
FAM134C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.124856e-02	ci left: 6.017652e-01	ci right 6.209699e-01	k: 6114	n:10000
Cons ci ratio: 7.435137e-02	ci left: 2.093488e-01	ci right 2.256161e-01	k: 2174	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
FAM134C   10000 perm   2 sec   (6536 perm/sec)   p_kst 1   p_cons 2.174000e-01   p_joint 6.114000e-01

Outputting figure to mutsig2_images.part000000000060/FAM134C.2_1437_10000_1_0.2174_0.6114.png
                gene_name: FAM134C
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 84 percent done.
FAM161A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.275826e-02	ci left: 3.462109e-01	ci right 3.650732e-01	k: 3556	n:10000
Cons ci ratio: 3.995386e-02	ci left: 4.805560e-01	ci right 5.002496e-01	k: 4904	n:10000
KS ci ratio: 7.340334e-02	ci left: 2.136891e-01	ci right 2.300732e-01	k: 2218	n:10000
FAM161A   10000 perm   2 sec   (6283 perm/sec)   p_kst 2.218000e-01   p_cons 4.904000e-01   p_joint 3.556000e-01

Outputting figure to mutsig2_images.part000000000060/FAM161A.2_2007_10000_0.2218_0.4904_0.3556.png
                gene_name: FAM161A
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 87 percent done.
FAM161B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.469983e-02	ci left: 1.688761e-01	ci right 1.839129e-01	k: 1763	n:10000
Cons ci ratio: 1.642256e-01	ci left: 4.945836e-02	ci right 5.840374e-02	k: 538	n:10000
KS ci ratio: 2.056393e-02	ci left: 7.760050e-01	ci right 7.922292e-01	k: 7842	n:10000
FAM161B   10000 perm   2 sec   (6489 perm/sec)   p_kst 7.842000e-01   p_cons 5.380000e-02   p_joint 1.763000e-01

Joint ci ratio: 9.454337e-02	ci left: 7.539590e-02	ci right 8.292699e-02	k: 1582	n:20000
Cons ci ratio: 1.164133e-01	ci left: 5.051865e-02	ci right 5.681191e-02	k: 1072	n:20000
KS ci ratio: 1.448061e-02	ci left: 7.798459e-01	ci right 7.912710e-01	k: 15712	n:20000
FAM161B   20000 perm   3 sec   (5719 perm/sec)   p_kst 7.856000e-01   p_cons 5.360000e-02   p_joint 7.910000e-02

Joint ci ratio: 6.410271e-02	ci left: 1.072693e-01	ci right 1.144063e-01	k: 3324	n:30000
Cons ci ratio: 1.005334e-01	ci left: 4.580345e-02	ci right 5.068451e-02	k: 1446	n:30000
KS ci ratio: 1.187128e-02	ci left: 7.795344e-01	ci right 7.888771e-01	k: 23527	n:30000
FAM161B   30000 perm   6 sec   (5422 perm/sec)   p_kst 7.842333e-01   p_cons 4.820000e-02   p_joint 1.108000e-01

Joint ci ratio: 6.642104e-02	ci left: 7.743329e-02	ci right 8.277786e-02	k: 3203	n:40000
Cons ci ratio: 8.379247e-02	ci left: 4.969724e-02	ci right 5.406811e-02	k: 2074	n:40000
KS ci ratio: 1.029398e-02	ci left: 7.797329e-01	ci right 7.878259e-01	k: 31352	n:40000
FAM161B   40000 perm   8 sec   (5240 perm/sec)   p_kst 7.838000e-01   p_cons 5.185000e-02   p_joint 8.007500e-02

Outputting figure to mutsig2_images.part000000000060/FAM161B.2_1980_40000_0.7838_0.05185_0.080075.png
                gene_name: FAM161B
               theta_stop: 0.084 
                    nperm: 40000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.052 
      ci_cons_bounds_left: 0.050 
     ci_cons_bounds_right: 0.054 
                  p_joint: 0.080 
     ci_joint_bounds_left: 0.077 
    ci_joint_bounds_right: 0.083 

Current progress: 89 percent done.
FAM162A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.208994e-02	ci left: 9.075108e-01	ci right 9.186472e-01	k: 9132	n:10000
Cons ci ratio: 6.478455e-03	ci left: 9.701607e-01	ci right 9.765595e-01	k: 9735	n:10000
KS ci ratio: 4.399229e-02	ci left: 4.327331e-01	ci right 4.523004e-01	k: 4425	n:10000
FAM162A   10000 perm   1 sec   (7226 perm/sec)   p_kst 4.425000e-01   p_cons 9.735000e-01   p_joint 9.132000e-01

Outputting figure to mutsig2_images.part000000000060/FAM162A.2_485_10000_0.4425_0.9735_0.9132.png
                gene_name: FAM162A
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 92 percent done.
FAM163A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.898779e-03	ci left: 9.881795e-01	ci right 9.921271e-01	k: 9903	n:10000
Cons ci ratio: 3.010923e-02	ci left: 6.193450e-01	ci right 6.383799e-01	k: 6289	n:10000
KS ci ratio: 1.233215e-02	ci left: 9.042208e-01	ci right 9.155391e-01	k: 9100	n:10000
FAM163A   10000 perm   1 sec   (7014 perm/sec)   p_kst 9.100000e-01   p_cons 6.289000e-01   p_joint 9.903000e-01

Outputting figure to mutsig2_images.part000000000060/FAM163A.2_512_10000_0.91_0.6289_0.9903.png
                gene_name: FAM163A
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 95 percent done.
FAM166A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.843563e-02	ci left: 8.112097e-01	ci right 8.264042e-01	k: 8189	n:10000
Cons ci ratio: 4.392995e-02	ci left: 4.334314e-01	ci right 4.530017e-01	k: 4432	n:10000
KS ci ratio: 4.876921e-02	ci left: 3.828123e-01	ci right 4.020504e-01	k: 3924	n:10000
FAM166A   10000 perm   1 sec   (6769 perm/sec)   p_kst 3.924000e-01   p_cons 4.432000e-01   p_joint 8.189000e-01

Outputting figure to mutsig2_images.part000000000060/FAM166A.2_982_10000_0.3924_0.4432_0.8189.png
                gene_name: FAM166A
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 97 percent done.
FAM166B
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000060
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 60 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1704>
Subject: Job 8004065: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1704>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000061> was used as the working directory.
Started at Sun Nov 11 15:05:45 2012
Results reported at Sun Nov 11 15:12:48 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000061.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000061.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 61  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000061.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    459.85 sec.
    Max Memory :      4697 MB
    Max Swap   :      7066 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
61
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 61
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 61: processing genes 5429 - 5519
Calculating significance of each gene.
Using projection method.
5429	FAM167A	4.407810e-01
5430	FAM167B	1.848120e-01
5431	FAM168A	1
5432	FAM168B	1
5433	FAM169A	2.615723e-01
5434	FAM169B	4.713367e-01
5435	FAM170A	3.519042e-02
5436	FAM171A1	1
5437	FAM171B	8.998008e-01
5438	FAM172A	5.748077e-01
5439	FAM173A	1
5440	FAM173B	8.304609e-02
5441	FAM174A	1.102641e-01
5442	FAM174B	1
5443	FAM175A	3.526970e-01
5444	FAM175B	7.724310e-01
5445	FAM176A	1
5446	FAM176B	1.840964e-01
5447	FAM177A1	1
5448	FAM177B	1
5449	FAM178A	8.838151e-01
5450	FAM179A	1
5451	FAM179B	9.717990e-01
5452	FAM180A	1.374862e-01
5453	FAM181A	7.628849e-01
5454	FAM181B	2.881834e-01
5455	FAM183A	1
5456	FAM184A	7.449500e-01
5457	FAM186B	9.886627e-01
5458	FAM187B	1
5459	FAM188A	6.897790e-01
5460	FAM188B	1.217360e-01
5461	FAM189A2	1
5462	FAM189B	5.775822e-01
5463	FAM18A	1
5464	FAM18B	1
5465	FAM18B2	1
5466	FAM190A	3.534344e-02
5467	FAM190B	6.857151e-01
5468	FAM192A	1
5469	FAM193A	7.351225e-01
5470	FAM193B	1
5471	FAM194A	9.556760e-01
5472	FAM195A	1
5473	FAM196A	7.123325e-01
5474	FAM198B	3.447742e-01
5475	FAM199X	7.322852e-01
5476	FAM19A1	7.999459e-03
5477	FAM19A2	5.938135e-03
5478	FAM19A3	4.040619e-01
5479	FAM19A4	3.241088e-01
5480	FAM19A5	2.942460e-02
5481	FAM20A	1
5482	FAM20B	5.153241e-01
5483	FAM21A	7.870374e-01
5484	FAM21B	9.342231e-01
5485	FAM21C	1
5486	FAM22F	8.253688e-01
5487	FAM22G	5.627986e-01
5488	FAM24A	1.274501e-02
5489	FAM24B	1
5490	FAM26D	1.175837e-01
5491	FAM26E	1
5492	FAM26F	1
5493	FAM32A	1
5494	FAM35A	1
5495	FAM36A	1
5496	FAM3A	1
5497	FAM3B	3.035561e-01
5498	FAM3C	1.513766e-01
5499	FAM3D	1
5500	FAM40A	7.282509e-01
5501	FAM40B	7.817382e-02
5502	FAM43A	1
5503	FAM43B	1
5504	FAM45A	1
5505	FAM46A	4.464575e-01
5506	FAM46B	1
5507	FAM46C	7.653767e-01
5508	FAM46D	5.146556e-01
5509	FAM47A	1.710535e-01
5510	FAM47B	1
5511	FAM47C	6.717568e-01
5512	FAM48A	6.874228e-01
5513	FAM48B1	6.809589e-02
5514	FAM48B2	9.170268e-01
5515	FAM49A	2.522128e-01
5516	FAM49B	7.239829e-01
5517	FAM50A	2.612348e-01
5518	FAM50B	7.213444e-01
5519	FAM53A	7.275309e-01
Done

Running MutSig 2:
Scatter job 61: processing genes 5429 - 5519
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
FAM47C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.803301e-02	ci left: 6.522301e-01	ci right 6.708757e-01	k: 6616	n:10000
Cons ci ratio: 2.120649e-02	ci left: 7.652685e-01	ci right 7.817719e-01	k: 7736	n:10000
KS ci ratio: 5.834631e-02	ci left: 3.018342e-01	ci right 3.200760e-01	k: 3109	n:10000
FAM47C   10000 perm   2 sec   (4011 perm/sec)   p_kst 3.109000e-01   p_cons 7.736000e-01   p_joint 6.616000e-01

Outputting figure to mutsig2_images.part000000000061/FAM47C.21_3112_10000_0.3109_0.7736_0.6616.png
                gene_name: FAM47C
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 3 percent done.
FAM47A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.309804e-01	ci left: 7.679184e-02	ci right 8.765300e-02	k: 821	n:10000
Cons ci ratio: 3.432872e-02	ci left: 5.561176e-01	ci right 5.756439e-01	k: 5659	n:10000
KS ci ratio: 2.809059e-01	ci left: 1.641496e-02	ci right 2.187026e-02	k: 190	n:10000
FAM47A   10000 perm   2 sec   (4478 perm/sec)   p_kst 1.900000e-02   p_cons 5.659000e-01   p_joint 8.210000e-02

Joint ci ratio: 1.374995e-01	ci left: 3.635916e-02	ci right 4.177590e-02	k: 780	n:20000
Cons ci ratio: 2.443901e-02	ci left: 5.556913e-01	ci right 5.694905e-01	k: 11252	n:20000
KS ci ratio: 1.978447e-01	ci left: 1.734330e-02	ci right 2.119826e-02	k: 384	n:20000
FAM47A   20000 perm   5 sec   (4055 perm/sec)   p_kst 1.920000e-02   p_cons 5.626000e-01   p_joint 3.900000e-02

Joint ci ratio: 1.100631e-01	ci left: 3.832970e-02	ci right 4.282649e-02	k: 1216	n:30000
Cons ci ratio: 1.994262e-02	ci left: 5.572645e-01	ci right 5.685233e-01	k: 16887	n:30000
KS ci ratio: 1.603418e-01	ci left: 1.796530e-02	ci right 2.112871e-02	k: 585	n:30000
FAM47A   30000 perm   8 sec   (3667 perm/sec)   p_kst 1.950000e-02   p_cons 5.629000e-01   p_joint 4.053333e-02

Joint ci ratio: 9.605017e-02	ci left: 3.805175e-02	ci right 4.191540e-02	k: 1598	n:40000
Cons ci ratio: 1.691055e-02	ci left: 5.683853e-01	ci right 5.781041e-01	k: 22930	n:40000
KS ci ratio: 1.416920e-01	ci left: 1.744327e-02	ci right 2.012724e-02	k: 750	n:40000
FAM47A   40000 perm   11 sec   (3583 perm/sec)   p_kst 1.875000e-02   p_cons 5.732500e-01   p_joint 3.995000e-02

Joint ci ratio: 8.928513e-02	ci left: 3.546023e-02	ci right 3.879378e-02	k: 1855	n:50000
Cons ci ratio: 1.546093e-02	ci left: 5.581182e-01	ci right 5.668345e-01	k: 28124	n:50000
KS ci ratio: 1.254291e-01	ci left: 1.795699e-02	ci right 2.037929e-02	k: 957	n:50000
FAM47A   50000 perm   14 sec   (3554 perm/sec)   p_kst 1.914000e-02   p_cons 5.624800e-01   p_joint 3.710000e-02

Joint ci ratio: 7.935132e-02	ci left: 3.753034e-02	ci right 4.064778e-02	k: 2344	n:60000
Cons ci ratio: 1.447183e-02	ci left: 5.461254e-01	ci right 5.541031e-01	k: 33007	n:60000
KS ci ratio: 1.133797e-01	ci left: 1.842475e-02	ci right 2.065540e-02	k: 1171	n:60000
FAM47A   60000 perm   17 sec   (3513 perm/sec)   p_kst 1.951667e-02   p_cons 5.501167e-01   p_joint 3.906667e-02

Joint ci ratio: 7.834559e-02	ci left: 3.317417e-02	ci right 3.589316e-02	k: 2416	n:70000
Cons ci ratio: 1.337717e-02	ci left: 5.472061e-01	ci right 5.545897e-01	k: 38563	n:70000
KS ci ratio: 1.053761e-01	ci left: 1.836323e-02	ci right 2.041974e-02	k: 1356	n:70000
FAM47A   70000 perm   20 sec   (3475 perm/sec)   p_kst 1.937143e-02   p_cons 5.509000e-01   p_joint 3.451429e-02

Joint ci ratio: 7.253140e-02	ci left: 3.394590e-02	ci right 3.651295e-02	k: 2817	n:80000
Cons ci ratio: 1.252967e-02	ci left: 5.467948e-01	ci right 5.537016e-01	k: 44020	n:80000
KS ci ratio: 1.017566e-01	ci left: 1.728496e-02	ci right 1.915022e-02	k: 1456	n:80000
FAM47A   80000 perm   23 sec   (3428 perm/sec)   p_kst 1.820000e-02   p_cons 5.502500e-01   p_joint 3.521250e-02

Joint ci ratio: 7.340766e-02	ci left: 2.958259e-02	ci right 3.184779e-02	k: 2763	n:90000
Cons ci ratio: 1.181350e-02	ci left: 5.469761e-01	ci right 5.534873e-01	k: 49521	n:90000
KS ci ratio: 9.609019e-02	ci left: 1.728243e-02	ci right 1.903771e-02	k: 1633	n:90000
FAM47A   90000 perm   27 sec   (3382 perm/sec)   p_kst 1.814444e-02   p_cons 5.502333e-01   p_joint 3.070000e-02

Outputting figure to mutsig2_images.part000000000061/FAM47A.15_2380_90000_0.018144_0.55023_0.0307.png
                gene_name: FAM47A
               theta_stop: 0.096 
                    nperm: 90000 
                     p_ks: 0.018 
        ci_ks_bounds_left: 0.017 
       ci_ks_bounds_right: 0.019 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.031 
     ci_joint_bounds_left: 0.030 
    ci_joint_bounds_right: 0.032 

Current progress: 5 percent done.
FAM40B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.141202e-02	ci left: 4.626742e-01	ci right 4.823418e-01	k: 4725	n:10000
Cons ci ratio: 2.513674e-02	ci left: 6.995839e-01	ci right 7.174944e-01	k: 7086	n:10000
KS ci ratio: 5.247176e-02	ci left: 3.486956e-01	ci right 3.675871e-01	k: 3581	n:10000
FAM40B   10000 perm   2 sec   (5182 perm/sec)   p_kst 3.581000e-01   p_cons 7.086000e-01   p_joint 4.725000e-01

Outputting figure to mutsig2_images.part000000000061/FAM40B.10_2612_10000_0.3581_0.7086_0.4725.png
                gene_name: FAM40B
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 8 percent done.
FAM188B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.412697e-02	ci left: 8.786872e-01	ci right 8.912875e-01	k: 8851	n:10000
Cons ci ratio: 2.272225e-02	ci left: 7.398746e-01	ci right 7.569805e-01	k: 7485	n:10000
KS ci ratio: 2.839059e-02	ci left: 6.464944e-01	ci right 6.652148e-01	k: 6559	n:10000
FAM188B   10000 perm   2 sec   (5333 perm/sec)   p_kst 6.559000e-01   p_cons 7.485000e-01   p_joint 8.851000e-01

Outputting figure to mutsig2_images.part000000000061/FAM188B.8_2346_10000_0.6559_0.7485_0.8851.png
                gene_name: FAM188B
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 11 percent done.
FAM190A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.872080e-01	ci left: 3.805695e-02	ci right 4.601263e-02	k: 419	n:10000
Cons ci ratio: 1.444354e-01	ci left: 6.362530e-02	ci right 7.362777e-02	k: 685	n:10000
KS ci ratio: 1.245670e-01	ci left: 8.446093e-02	ci right 9.577916e-02	k: 900	n:10000
FAM190A   10000 perm   2 sec   (4891 perm/sec)   p_kst 9.000000e-02   p_cons 6.850000e-02   p_joint 4.190000e-02

Joint ci ratio: 1.360556e-01	ci left: 3.713280e-02	ci right 4.260201e-02	k: 796	n:20000
Cons ci ratio: 1.000734e-01	ci left: 6.767355e-02	ci right 7.485170e-02	k: 1424	n:20000
KS ci ratio: 8.797668e-02	ci left: 8.631360e-02	ci right 9.430597e-02	k: 1805	n:20000
FAM190A   20000 perm   5 sec   (4416 perm/sec)   p_kst 9.025000e-02   p_cons 7.120000e-02   p_joint 3.980000e-02

Joint ci ratio: 1.212501e-01	ci left: 3.162187e-02	ci right 3.573575e-02	k: 1009	n:30000
Cons ci ratio: 8.192707e-02	ci left: 6.798799e-02	ci right 7.382878e-02	k: 2126	n:30000
KS ci ratio: 7.196463e-02	ci left: 8.675196e-02	ci right 9.326102e-02	k: 2699	n:30000
FAM190A   30000 perm   7 sec   (4205 perm/sec)   p_kst 8.996667e-02   p_cons 7.086667e-02   p_joint 3.363333e-02

Joint ci ratio: 1.173246e-01	ci left: 2.555494e-02	ci right 2.876420e-02	k: 1085	n:40000
Cons ci ratio: 6.777553e-02	ci left: 7.455338e-02	ci right 7.980819e-02	k: 3086	n:40000
KS ci ratio: 6.302817e-02	ci left: 8.538909e-02	ci right 9.097086e-02	k: 3526	n:40000
FAM190A   40000 perm   10 sec   (4102 perm/sec)   p_kst 8.815000e-02   p_cons 7.715000e-02   p_joint 2.712500e-02

Joint ci ratio: 8.624208e-02	ci left: 3.796616e-02	ci right 4.140755e-02	k: 1983	n:50000
Cons ci ratio: 6.045714e-02	ci left: 7.521035e-02	ci right 7.991884e-02	k: 3877	n:50000
KS ci ratio: 5.669033e-02	ci left: 8.480033e-02	ci right 8.976771e-02	k: 4363	n:50000
FAM190A   50000 perm   12 sec   (4016 perm/sec)   p_kst 8.726000e-02   p_cons 7.754000e-02   p_joint 3.966000e-02

Outputting figure to mutsig2_images.part000000000061/FAM190A.7_2771_50000_0.08726_0.07754_0.03966.png
                gene_name: FAM190A
               theta_stop: 0.086 
                    nperm: 50000 
                     p_ks: 0.087 
        ci_ks_bounds_left: 0.085 
       ci_ks_bounds_right: 0.090 
                   p_cons: 0.078 
      ci_cons_bounds_left: 0.075 
     ci_cons_bounds_right: 0.080 
                  p_joint: 0.040 
     ci_joint_bounds_left: 0.038 
    ci_joint_bounds_right: 0.041 

Current progress: 13 percent done.
FAM48B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.792091e-02	ci left: 3.911750e-01	ci right 4.104828e-01	k: 4008	n:10000
Cons ci ratio: 8.591465e-02	ci left: 1.648463e-01	ci right 1.797451e-01	k: 1722	n:10000
KS ci ratio: 4.361100e-02	ci left: 4.370225e-01	ci right 4.566085e-01	k: 4468	n:10000
FAM48B1   10000 perm   2 sec   (5141 perm/sec)   p_kst 4.468000e-01   p_cons 1.722000e-01   p_joint 4.008000e-01

Outputting figure to mutsig2_images.part000000000061/FAM48B1.6_2667_10000_0.4468_0.1722_0.4008.png
                gene_name: FAM48B1
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 16 percent done.
FAM47B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.390156e-02	ci left: 1.413875e-01	ci right 1.554180e-01	k: 1483	n:10000
Cons ci ratio: 4.686731e-03	ci left: 9.835003e-01	ci right 9.882104e-01	k: 9860	n:10000
KS ci ratio: 1.361933e-01	ci left: 7.126753e-02	ci right 8.178074e-02	k: 764	n:10000
FAM47B   10000 perm   2 sec   (5891 perm/sec)   p_kst 7.640000e-02   p_cons 9.860000e-01   p_joint 1.483000e-01

Joint ci ratio: 6.603416e-02	ci left: 1.448309e-01	ci right 1.547711e-01	k: 2995	n:20000
Cons ci ratio: 3.402738e-03	ci left: 9.834291e-01	ci right 9.868277e-01	k: 19704	n:20000
KS ci ratio: 9.661324e-02	ci left: 7.236421e-02	ci right 7.975961e-02	k: 1520	n:20000
FAM47B   20000 perm   4 sec   (5247 perm/sec)   p_kst 7.600000e-02   p_cons 9.852000e-01   p_joint 1.497500e-01

Outputting figure to mutsig2_images.part000000000061/FAM47B.5_1942_20000_0.076_0.9852_0.14975.png
                gene_name: FAM47B
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.076 
        ci_ks_bounds_left: 0.072 
       ci_ks_bounds_right: 0.080 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 18 percent done.
FAM169A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.577795e-02	ci left: 2.030380e-01	ci right 2.191306e-01	k: 2110	n:10000
Cons ci ratio: 1.241887e-01	ci left: 8.494677e-02	ci right 9.629302e-02	k: 905	n:10000
KS ci ratio: 4.499582e-02	ci left: 4.216640e-01	ci right 4.411760e-01	k: 4314	n:10000
FAM169A   10000 perm   2 sec   (5921 perm/sec)   p_kst 4.314000e-01   p_cons 9.050000e-02   p_joint 2.110000e-01

Joint ci ratio: 5.903108e-02	ci left: 1.752903e-01	ci right 1.860027e-01	k: 3612	n:20000
Cons ci ratio: 8.718300e-02	ci left: 8.778382e-02	ci right 9.583530e-02	k: 1835	n:20000
KS ci ratio: 3.093716e-02	ci left: 4.383455e-01	ci right 4.521704e-01	k: 8905	n:20000
FAM169A   20000 perm   4 sec   (5258 perm/sec)   p_kst 4.452500e-01   p_cons 9.175000e-02   p_joint 1.806000e-01

Outputting figure to mutsig2_images.part000000000061/FAM169A.4_2061_20000_0.44525_0.09175_0.1806.png
                gene_name: FAM169A
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.092 
      ci_cons_bounds_left: 0.088 
     ci_cons_bounds_right: 0.096 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 21 percent done.
FAM170A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.043521e-02	ci left: 3.669909e-01	ci right 3.860810e-01	k: 3765	n:10000
Cons ci ratio: 3.177704e-02	ci left: 5.937330e-01	ci right 6.130067e-01	k: 6034	n:10000
KS ci ratio: 1.096588e-01	ci left: 1.070534e-01	ci right 1.195729e-01	k: 1132	n:10000
FAM170A   10000 perm   2 sec   (5871 perm/sec)   p_kst 1.132000e-01   p_cons 6.034000e-01   p_joint 3.765000e-01

Joint ci ratio: 4.331313e-02	ci left: 2.842139e-01	ci right 2.968470e-01	k: 5810	n:20000
Cons ci ratio: 2.268044e-02	ci left: 5.921185e-01	ci right 6.057527e-01	k: 11979	n:20000
KS ci ratio: 7.676089e-02	ci left: 1.109048e-01	ci right 1.198074e-01	k: 2306	n:20000
FAM170A   20000 perm   4 sec   (5278 perm/sec)   p_kst 1.153000e-01   p_cons 5.989500e-01   p_joint 2.905000e-01

Outputting figure to mutsig2_images.part000000000061/FAM170A.4_1006_20000_0.1153_0.59895_0.2905.png
                gene_name: FAM170A
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 24 percent done.
FAM171B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.333818e-01	ci left: 7.417406e-02	ci right 8.487241e-02	k: 794	n:10000
Cons ci ratio: 2.911757e-01	ci left: 1.520682e-02	ci right 2.047941e-02	k: 177	n:10000
KS ci ratio: 2.018079e-02	ci left: 7.823898e-01	ci right 7.984406e-01	k: 7905	n:10000
FAM171B   10000 perm   2 sec   (5422 perm/sec)   p_kst 7.905000e-01   p_cons 1.770000e-02   p_joint 7.940000e-02

Joint ci ratio: 8.917600e-02	ci left: 8.415788e-02	ci right 9.206234e-02	k: 1761	n:20000
Cons ci ratio: 2.076863e-01	ci left: 1.568069e-02	ci right 1.936149e-02	k: 349	n:20000
KS ci ratio: 1.465024e-02	ci left: 7.758587e-01	ci right 7.873593e-01	k: 15633	n:20000
FAM171B   20000 perm   4 sec   (4875 perm/sec)   p_kst 7.816500e-01   p_cons 1.745000e-02   p_joint 8.805000e-02

Joint ci ratio: 7.385914e-02	ci left: 8.265433e-02	ci right 8.902614e-02	k: 2574	n:30000
Cons ci ratio: 1.670048e-01	ci left: 1.652569e-02	ci right 1.956867e-02	k: 540	n:30000
KS ci ratio: 1.194724e-02	ci left: 7.773511e-01	ci right 7.867275e-01	k: 23462	n:30000
FAM171B   30000 perm   6 sec   (4666 perm/sec)   p_kst 7.820667e-01   p_cons 1.800000e-02   p_joint 8.580000e-02

Joint ci ratio: 7.019484e-02	ci left: 6.978062e-02	ci right 7.488168e-02	k: 2892	n:40000
Cons ci ratio: 1.469650e-01	ci left: 1.618942e-02	ci right 1.878130e-02	k: 698	n:40000
KS ci ratio: 1.029094e-02	ci left: 7.798335e-01	ci right 7.879252e-01	k: 31356	n:40000
FAM171B   40000 perm   9 sec   (4529 perm/sec)   p_kst 7.839000e-01   p_cons 1.745000e-02   p_joint 7.230000e-02

Joint ci ratio: 6.203172e-02	ci left: 7.166116e-02	ci right 7.626845e-02	k: 3697	n:50000
Cons ci ratio: 1.326721e-01	ci left: 1.602043e-02	ci right 1.831612e-02	k: 857	n:50000
KS ci ratio: 9.192534e-03	ci left: 7.807086e-01	ci right 7.879384e-01	k: 39217	n:50000
FAM171B   50000 perm   11 sec   (4415 perm/sec)   p_kst 7.843400e-01   p_cons 1.714000e-02   p_joint 7.394000e-02

Joint ci ratio: 4.382253e-02	ci left: 1.150822e-01	ci right 1.202549e-01	k: 7059	n:60000
Cons ci ratio: 1.122613e-01	ci left: 1.879747e-02	ci right 2.104931e-02	k: 1194	n:60000
KS ci ratio: 8.414077e-03	ci left: 7.801155e-01	ci right 7.867238e-01	k: 47006	n:60000
FAM171B   60000 perm   14 sec   (4315 perm/sec)   p_kst 7.834333e-01   p_cons 1.990000e-02   p_joint 1.176500e-01

Joint ci ratio: 3.907994e-02	ci left: 1.232101e-01	ci right 1.281353e-01	k: 8796	n:70000
Cons ci ratio: 1.026700e-01	ci left: 1.935162e-02	ci right 2.145982e-02	k: 1427	n:70000
KS ci ratio: 7.819206e-03	ci left: 7.790805e-01	ci right 7.852104e-01	k: 54751	n:70000
FAM171B   70000 perm   17 sec   (4229 perm/sec)   p_kst 7.821571e-01   p_cons 2.038571e-02   p_joint 1.256571e-01

Joint ci ratio: 4.199005e-02	ci left: 9.617099e-02	ci right 1.003082e-01	k: 7858	n:80000
Cons ci ratio: 9.538479e-02	ci left: 1.968793e-02	ci right 2.167205e-02	k: 1653	n:80000
KS ci ratio: 7.307373e-03	ci left: 7.795997e-01	ci right 7.853298e-01	k: 62598	n:80000
FAM171B   80000 perm   19 sec   (4151 perm/sec)   p_kst 7.824750e-01   p_cons 2.066250e-02   p_joint 9.822500e-02

Outputting figure to mutsig2_images.part000000000061/FAM171B.4_2513_80000_0.78248_0.020663_0.098225.png
                gene_name: FAM171B
               theta_stop: 0.095 
                    nperm: 80000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.021 
      ci_cons_bounds_left: 0.020 
     ci_cons_bounds_right: 0.022 
                  p_joint: 0.098 
     ci_joint_bounds_left: 0.096 
    ci_joint_bounds_right: 0.10 

Current progress: 26 percent done.
FAM184A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.618131e-02	ci left: 6.823426e-01	ci right 7.005457e-01	k: 6915	n:10000
Cons ci ratio: 1.430680e-02	ci left: 8.760270e-01	ci right 8.887493e-01	k: 8825	n:10000
KS ci ratio: 4.111420e-02	ci left: 4.662695e-01	ci right 4.859444e-01	k: 4761	n:10000
FAM184A   10000 perm   2 sec   (5285 perm/sec)   p_kst 4.761000e-01   p_cons 8.825000e-01   p_joint 6.915000e-01

Outputting figure to mutsig2_images.part000000000061/FAM184A.4_3495_10000_0.4761_0.8825_0.6915.png
                gene_name: FAM184A
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 29 percent done.
FAM193A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.191022e-02	ci left: 1.467809e-01	ci right 1.610214e-01	k: 1538	n:10000
Cons ci ratio: 8.767228e-02	ci left: 1.592465e-01	ci right 1.739483e-01	k: 1665	n:10000
KS ci ratio: 8.484586e-02	ci left: 1.683846e-01	ci right 1.834047e-01	k: 1758	n:10000
FAM193A   10000 perm   2 sec   (5001 perm/sec)   p_kst 1.758000e-01   p_cons 1.665000e-01   p_joint 1.538000e-01

Outputting figure to mutsig2_images.part000000000061/FAM193A.4_3743_10000_0.1758_0.1665_0.1538.png
                gene_name: FAM193A
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 32 percent done.
FAM173B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.171582e-02	ci left: 3.553558e-01	ci right 3.743230e-01	k: 3648	n:10000
Cons ci ratio: 3.887410e-02	ci left: 4.942505e-01	ci right 5.139471e-01	k: 5041	n:10000
KS ci ratio: 7.015953e-02	ci left: 2.294830e-01	ci right 2.462699e-01	k: 2378	n:10000
FAM173B   10000 perm   2 sec   (6427 perm/sec)   p_kst 2.378000e-01   p_cons 5.041000e-01   p_joint 3.648000e-01

Outputting figure to mutsig2_images.part000000000061/FAM173B.3_722_10000_0.2378_0.5041_0.3648.png
                gene_name: FAM173B
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 34 percent done.
FAM178A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.484857e-02	ci left: 5.487016e-01	ci right 5.682643e-01	k: 5585	n:10000
Cons ci ratio: 6.239472e-02	ci left: 2.740864e-01	ci right 2.918402e-01	k: 2829	n:10000
KS ci ratio: 4.198116e-02	ci left: 4.558845e-01	ci right 4.755355e-01	k: 4657	n:10000
FAM178A   10000 perm   2 sec   (5316 perm/sec)   p_kst 4.657000e-01   p_cons 2.829000e-01   p_joint 5.585000e-01

Outputting figure to mutsig2_images.part000000000061/FAM178A.3_3677_10000_0.4657_0.2829_0.5585.png
                gene_name: FAM178A
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 37 percent done.
FAM179B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.506374e-02	ci left: 7.007944e-01	ci right 7.186833e-01	k: 7098	n:10000
Cons ci ratio: 4.603814e-02	ci left: 4.105002e-01	ci right 4.299463e-01	k: 4202	n:10000
KS ci ratio: 3.569007e-02	ci left: 5.368806e-01	ci right 5.564922e-01	k: 5467	n:10000
FAM179B   10000 perm   2 sec   (4670 perm/sec)   p_kst 5.467000e-01   p_cons 4.202000e-01   p_joint 7.098000e-01

Outputting figure to mutsig2_images.part000000000061/FAM179B.3_5239_10000_0.5467_0.4202_0.7098.png
                gene_name: FAM179B
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 39 percent done.
FAM190B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.195997e-02	ci left: 9.092595e-01	ci right 9.202975e-01	k: 9149	n:10000
Cons ci ratio: 2.691388e-02	ci left: 6.703529e-01	ci right 6.887424e-01	k: 6796	n:10000
KS ci ratio: 1.720538e-02	ci left: 8.311391e-01	ci right 8.456632e-01	k: 8385	n:10000
FAM190B   10000 perm   2 sec   (5726 perm/sec)   p_kst 8.385000e-01   p_cons 6.796000e-01   p_joint 9.149000e-01

Outputting figure to mutsig2_images.part000000000061/FAM190B.3_2545_10000_0.8385_0.6796_0.9149.png
                gene_name: FAM190B
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 42 percent done.
FAM198B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.670990e-02	ci left: 5.228628e-01	ci right 5.425181e-01	k: 5327	n:10000
Cons ci ratio: 1.273034e-01	ci left: 8.106153e-02	ci right 9.218067e-02	k: 865	n:10000
KS ci ratio: 2.469315e-02	ci left: 7.069489e-01	ci right 7.247252e-01	k: 7159	n:10000
FAM198B   10000 perm   2 sec   (5971 perm/sec)   p_kst 7.159000e-01   p_cons 8.650000e-02   p_joint 5.327000e-01

Joint ci ratio: 4.017541e-02	ci left: 3.159733e-01	ci right 3.289784e-01	k: 6449	n:20000
Cons ci ratio: 8.689668e-02	ci left: 8.832299e-02	ci right 9.639598e-02	k: 1846	n:20000
KS ci ratio: 1.769736e-02	ci left: 7.040586e-01	ci right 7.166802e-01	k: 14208	n:20000
FAM198B   20000 perm   4 sec   (5339 perm/sec)   p_kst 7.104000e-01   p_cons 9.230000e-02   p_joint 3.224500e-01

Outputting figure to mutsig2_images.part000000000061/FAM198B.3_1681_20000_0.7104_0.0923_0.32245.png
                gene_name: FAM198B
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.092 
      ci_cons_bounds_left: 0.088 
     ci_cons_bounds_right: 0.096 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 45 percent done.
FAM19A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.002348e-02	ci left: 9.338193e-01	ci right 9.433233e-01	k: 9387	n:10000
KS ci ratio: 2.081274e-02	ci left: 7.718513e-01	ci right 7.881853e-01	k: 7801	n:10000
FAM19A1   10000 perm   2 sec   (6606 perm/sec)   p_kst 7.801000e-01   p_cons 9.387000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000061/FAM19A1.3_418_10000_0.7801_0.9387_1.png
                gene_name: FAM19A1
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 47 percent done.
FAM19A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.045373e-02	ci left: 2.869643e-01	ci right 3.049547e-01	k: 2959	n:10000
Cons ci ratio: 2.616291e-02	ci left: 6.826450e-01	ci right 7.008432e-01	k: 6918	n:10000
KS ci ratio: 7.977151e-02	ci left: 1.866835e-01	ci right 2.022949e-01	k: 1944	n:10000
FAM19A2   10000 perm   2 sec   (6574 perm/sec)   p_kst 1.944000e-01   p_cons 6.918000e-01   p_joint 2.959000e-01

Outputting figure to mutsig2_images.part000000000061/FAM19A2.3_412_10000_0.1944_0.6918_0.2959.png
                gene_name: FAM19A2
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 50 percent done.
FAM22G
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.298773e-02	ci left: 7.354271e-01	ci right 7.526306e-01	k: 7441	n:10000
Cons ci ratio: 2.301790e-02	ci left: 7.349217e-01	ci right 7.521362e-01	k: 7436	n:10000
KS ci ratio: 3.849500e-02	ci left: 4.991503e-01	ci right 5.188444e-01	k: 5090	n:10000
FAM22G   10000 perm   2 sec   (5870 perm/sec)   p_kst 5.090000e-01   p_cons 7.436000e-01   p_joint 7.441000e-01

Outputting figure to mutsig2_images.part000000000061/FAM22G.3_2297_10000_0.509_0.7436_0.7441.png
                gene_name: FAM22G
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.75 

Current progress: 53 percent done.
FAM24A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.128144e-02	ci left: 6.012631e-01	ci right 6.204723e-01	k: 6109	n:10000
KS ci ratio: 3.446865e-02	ci left: 5.541131e-01	ci right 5.736497e-01	k: 5639	n:10000
FAM24A   10000 perm   1 sec   (6890 perm/sec)   p_kst 5.639000e-01   p_cons 6.109000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000061/FAM24A.3_326_10000_0.5639_0.6109_1.png
                gene_name: FAM24A
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 55 percent done.
FAM40A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.759258e-02	ci left: 3.073885e-01	ci right 3.257185e-01	k: 3165	n:10000
Cons ci ratio: 3.017375e-02	ci left: 6.183401e-01	ci right 6.373854e-01	k: 6279	n:10000
KS ci ratio: 6.875699e-02	ci left: 2.367933e-01	ci right 2.537553e-01	k: 2452	n:10000
FAM40A   10000 perm   2 sec   (5732 perm/sec)   p_kst 2.452000e-01   p_cons 6.279000e-01   p_joint 3.165000e-01

Outputting figure to mutsig2_images.part000000000061/FAM40A.3_2598_10000_0.2452_0.6279_0.3165.png
                gene_name: FAM40A
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 58 percent done.
FAM171A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.476387e-02	ci left: 5.499041e-01	ci right 5.694611e-01	k: 5597	n:10000
KS ci ratio: 1.327990e-02	ci left: 8.909790e-01	ci right 9.029887e-01	k: 8971	n:10000
FAM171A1   10000 perm   2 sec   (5773 perm/sec)   p_kst 8.971000e-01   p_cons 5.597000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000061/FAM171A1.2_2705_10000_0.8971_0.5597_1.png
                gene_name: FAM171A1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 61 percent done.
FAM172A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.871987e-02	ci left: 2.369909e-01	ci right 2.539576e-01	k: 2454	n:10000
Cons ci ratio: 6.866427e-02	ci left: 2.372873e-01	ci right 2.542610e-01	k: 2457	n:10000
KS ci ratio: 9.859073e-02	ci left: 1.297297e-01	ci right 1.432828e-01	k: 1364	n:10000
FAM172A   10000 perm   2 sec   (6456 perm/sec)   p_kst 1.364000e-01   p_cons 2.457000e-01   p_joint 2.454000e-01

Outputting figure to mutsig2_images.part000000000061/FAM172A.2_1291_10000_0.1364_0.2457_0.2454.png
                gene_name: FAM172A
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 63 percent done.
FAM174A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.857979e-02	ci left: 4.980503e-01	ci right 5.177451e-01	k: 5079	n:10000
KS ci ratio: 2.243869e-02	ci left: 7.446266e-01	ci right 7.616257e-01	k: 7532	n:10000
FAM174A   10000 perm   1 sec   (6854 perm/sec)   p_kst 7.532000e-01   p_cons 5.079000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000061/FAM174A.2_585_10000_0.7532_0.5079_1.png
                gene_name: FAM174A
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 66 percent done.
FAM175A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.570014e-02	ci left: 8.548806e-01	ci right 8.685080e-01	k: 8618	n:10000
Cons ci ratio: 3.743116e-02	ci left: 5.131551e-01	ci right 5.328315e-01	k: 5230	n:10000
KS ci ratio: 6.118695e-02	ci left: 2.820102e-01	ci right 2.999117e-01	k: 2909	n:10000
FAM175A   10000 perm   1 sec   (6797 perm/sec)   p_kst 2.909000e-01   p_cons 5.230000e-01   p_joint 8.618000e-01

Outputting figure to mutsig2_images.part000000000061/FAM175A.2_1266_10000_0.2909_0.523_0.8618.png
                gene_name: FAM175A
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 68 percent done.
FAM179A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.747765e-02	ci left: 8.267638e-01	ci right 8.414410e-01	k: 8342	n:10000
Cons ci ratio: 2.609546e-02	ci left: 6.837536e-01	ci right 7.019339e-01	k: 6929	n:10000
KS ci ratio: 3.979435e-02	ci left: 4.825547e-01	ci right 5.022497e-01	k: 4924	n:10000
FAM179A   10000 perm   2 sec   (5658 perm/sec)   p_kst 4.924000e-01   p_cons 6.929000e-01   p_joint 8.342000e-01

Outputting figure to mutsig2_images.part000000000061/FAM179A.2_3136_10000_0.4924_0.6929_0.8342.png
                gene_name: FAM179A
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 71 percent done.
FAM180A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.682149e-02	ci left: 4.023300e-01	ci right 4.217213e-01	k: 4120	n:10000
Cons ci ratio: 2.777056e-02	ci left: 6.564574e-01	ci right 6.750460e-01	k: 6658	n:10000
KS ci ratio: 2.131928e-01	ci left: 2.920604e-02	ci right 3.626959e-02	k: 326	n:10000
FAM180A   10000 perm   1 sec   (6978 perm/sec)   p_kst 3.260000e-02   p_cons 6.658000e-01   p_joint 4.120000e-01

Joint ci ratio: 1.034344e-01	ci left: 6.352427e-02	ci right 7.050225e-02	k: 1339	n:20000
Cons ci ratio: 1.937335e-02	ci left: 6.652428e-01	ci right 6.783073e-01	k: 13436	n:20000
KS ci ratio: 1.475196e-01	ci left: 3.157949e-02	ci right 3.665714e-02	k: 681	n:20000
FAM180A   20000 perm   3 sec   (6139 perm/sec)   p_kst 3.405000e-02   p_cons 6.718000e-01   p_joint 6.695000e-02

Joint ci ratio: 8.820587e-02	ci left: 5.903581e-02	ci right 6.451610e-02	k: 1852	n:30000
Cons ci ratio: 1.572052e-02	ci left: 6.691979e-01	ci right 6.798349e-01	k: 20236	n:30000
KS ci ratio: 1.192486e-01	ci left: 3.268985e-02	ci right 3.686754e-02	k: 1042	n:30000
FAM180A   30000 perm   5 sec   (5819 perm/sec)   p_kst 3.473333e-02   p_cons 6.745333e-01   p_joint 6.173333e-02

Joint ci ratio: 6.899396e-02	ci left: 7.209280e-02	ci right 7.726915e-02	k: 2986	n:40000
Cons ci ratio: 1.365580e-02	ci left: 6.685785e-01	ci right 6.777963e-01	k: 26928	n:40000
KS ci ratio: 1.037633e-01	ci left: 3.265968e-02	ci right 3.625832e-02	k: 1377	n:40000
FAM180A   40000 perm   7 sec   (5587 perm/sec)   p_kst 3.442500e-02   p_cons 6.732000e-01   p_joint 7.465000e-02

Joint ci ratio: 6.425441e-02	ci left: 6.704960e-02	ci right 7.152056e-02	k: 3463	n:50000
Cons ci ratio: 1.223527e-02	ci left: 6.683064e-01	ci right 6.765536e-01	k: 33622	n:50000
KS ci ratio: 9.268362e-02	ci left: 3.293689e-02	ci right 3.615745e-02	k: 1726	n:50000
FAM180A   50000 perm   9 sec   (5404 perm/sec)   p_kst 3.452000e-02   p_cons 6.724400e-01   p_joint 6.926000e-02

Outputting figure to mutsig2_images.part000000000061/FAM180A.2_534_50000_0.03452_0.67244_0.06926.png
                gene_name: FAM180A
               theta_stop: 0.093 
                    nperm: 50000 
                     p_ks: 0.035 
        ci_ks_bounds_left: 0.033 
       ci_ks_bounds_right: 0.036 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.069 
     ci_joint_bounds_left: 0.067 
    ci_joint_bounds_right: 0.072 

Current progress: 74 percent done.
FAM189B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.447022e-02	ci left: 3.318056e-01	ci right 3.504870e-01	k: 3411	n:10000
KS ci ratio: 1.675881e-02	ci left: 8.382657e-01	ci right 8.525325e-01	k: 8455	n:10000
FAM189B   10000 perm   2 sec   (6082 perm/sec)   p_kst 8.455000e-01   p_cons 3.411000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000061/FAM189B.2_2055_10000_0.8455_0.3411_1.png
                gene_name: FAM189B
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
FAM196A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.885068e-03	ci left: 9.822058e-01	ci right 9.871060e-01	k: 9848	n:10000
Cons ci ratio: 3.035655e-01	ci left: 1.390981e-02	ci right 1.897755e-02	k: 163	n:10000
KS ci ratio: 4.885068e-03	ci left: 9.822058e-01	ci right 9.871060e-01	k: 9848	n:10000
FAM196A   10000 perm   2 sec   (6400 perm/sec)   p_kst 9.848000e-01   p_cons 1.630000e-02   p_joint 9.848000e-01

Joint ci ratio: 3.332273e-03	ci left: 9.840628e-01	ci right 9.873938e-01	k: 19716	n:20000
Cons ci ratio: 2.223652e-01	ci left: 1.359738e-02	ci right 1.704562e-02	k: 305	n:20000
KS ci ratio: 3.332273e-03	ci left: 9.840628e-01	ci right 9.873938e-01	k: 19716	n:20000
FAM196A   20000 perm   4 sec   (5638 perm/sec)   p_kst 9.858000e-01   p_cons 1.525000e-02   p_joint 9.858000e-01

Joint ci ratio: 2.709582e-03	ci left: 9.845011e-01	ci right 9.872036e-01	k: 29577	n:30000
Cons ci ratio: 1.754506e-01	ci left: 1.492932e-02	ci right 1.783210e-02	k: 490	n:30000
KS ci ratio: 2.709582e-03	ci left: 9.845011e-01	ci right 9.872036e-01	k: 29577	n:30000
FAM196A   30000 perm   6 sec   (5395 perm/sec)   p_kst 9.859000e-01   p_cons 1.633333e-02   p_joint 9.859000e-01

Joint ci ratio: 2.331130e-03	ci left: 9.848782e-01	ci right 9.872005e-01	k: 39443	n:40000
Cons ci ratio: 1.521423e-01	ci left: 1.508179e-02	ci right 1.758914e-02	k: 652	n:40000
KS ci ratio: 2.331130e-03	ci left: 9.848782e-01	ci right 9.872005e-01	k: 39443	n:40000
FAM196A   40000 perm   8 sec   (5201 perm/sec)   p_kst 9.860750e-01   p_cons 1.630000e-02   p_joint 9.860750e-01

Joint ci ratio: 2.070604e-03	ci left: 9.852009e-01	ci right 9.872621e-01	k: 49313	n:50000
Cons ci ratio: 1.380053e-01	ci left: 1.478310e-02	ci right 1.699362e-02	k: 793	n:50000
KS ci ratio: 2.070604e-03	ci left: 9.852009e-01	ci right 9.872621e-01	k: 49313	n:50000
FAM196A   50000 perm   10 sec   (5056 perm/sec)   p_kst 9.862600e-01   p_cons 1.586000e-02   p_joint 9.862600e-01

Joint ci ratio: 1.873191e-03	ci left: 9.855444e-01	ci right 9.874081e-01	k: 59190	n:60000
Cons ci ratio: 1.272630e-01	ci left: 1.457515e-02	ci right 1.657210e-02	k: 933	n:60000
KS ci ratio: 1.873191e-03	ci left: 9.855444e-01	ci right 9.874081e-01	k: 59190	n:60000
FAM196A   60000 perm   12 sec   (4895 perm/sec)   p_kst 9.865000e-01   p_cons 1.555000e-02   p_joint 9.865000e-01

Joint ci ratio: 1.722911e-03	ci left: 9.857943e-01	ci right 9.875079e-01	k: 69067	n:70000
Cons ci ratio: 1.166147e-01	ci left: 1.495856e-02	ci right 1.682474e-02	k: 1111	n:70000
KS ci ratio: 1.722911e-03	ci left: 9.857943e-01	ci right 9.875079e-01	k: 69067	n:70000
FAM196A   70000 perm   15 sec   (4770 perm/sec)   p_kst 9.866714e-01   p_cons 1.587143e-02   p_joint 9.866714e-01

Joint ci ratio: 1.617426e-03	ci left: 9.857534e-01	ci right 9.873611e-01	k: 78926	n:80000
Cons ci ratio: 1.099148e-01	ci left: 1.478911e-02	ci right 1.652127e-02	k: 1251	n:80000
KS ci ratio: 1.617426e-03	ci left: 9.857534e-01	ci right 9.873611e-01	k: 78926	n:80000
FAM196A   80000 perm   17 sec   (4666 perm/sec)   p_kst 9.865750e-01   p_cons 1.563750e-02   p_joint 9.865750e-01

Joint ci ratio: 1.527882e-03	ci left: 9.857474e-01	ci right 9.872654e-01	k: 88787	n:90000
Cons ci ratio: 1.035354e-01	ci left: 1.486544e-02	ci right 1.649933e-02	k: 1410	n:90000
KS ci ratio: 1.527882e-03	ci left: 9.857474e-01	ci right 9.872654e-01	k: 88787	n:90000
FAM196A   90000 perm   20 sec   (4581 perm/sec)   p_kst 9.865222e-01   p_cons 1.566667e-02   p_joint 9.865222e-01

Joint ci ratio: 1.456604e-03	ci left: 9.856526e-01	ci right 9.870990e-01	k: 98639	n:100000
Cons ci ratio: 9.843875e-02	ci left: 1.484101e-02	ci right 1.638727e-02	k: 1560	n:100000
KS ci ratio: 1.456604e-03	ci left: 9.856526e-01	ci right 9.870990e-01	k: 98639	n:100000
FAM196A   100000 perm   22 sec   (4501 perm/sec)   p_kst 9.863900e-01   p_cons 1.560000e-02   p_joint 9.863900e-01

Outputting figure to mutsig2_images.part000000000061/FAM196A.2_1452_100000_0.98639_0.0156_0.98639.png
                gene_name: FAM196A
               theta_stop: 0.098 
                    nperm: 100000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.016 
      ci_cons_bounds_left: 0.015 
     ci_cons_bounds_right: 0.016 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 79 percent done.
FAM19A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.446164e-02	ci left: 5.542133e-01	ci right 5.737494e-01	k: 5640	n:10000
Cons ci ratio: 5.230103e-02	ci left: 3.501865e-01	ci right 3.690954e-01	k: 3596	n:10000
KS ci ratio: 3.623340e-02	ci left: 5.293701e-01	ci right 5.490070e-01	k: 5392	n:10000
FAM19A5   10000 perm   2 sec   (6361 perm/sec)   p_kst 5.392000e-01   p_cons 3.596000e-01   p_joint 5.640000e-01

Outputting figure to mutsig2_images.part000000000061/FAM19A5.2_510_10000_0.5392_0.3596_0.564.png
                gene_name: FAM19A5
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 82 percent done.
FAM20B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.042345e-01	ci left: 1.174050e-01	ci right 1.304149e-01	k: 1238	n:10000
KS ci ratio: 2.992891e-02	ci left: 6.221590e-01	ci right 6.411643e-01	k: 6317	n:10000
FAM20B   10000 perm   2 sec   (6636 perm/sec)   p_kst 6.317000e-01   p_cons 1.238000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 7.374025e-02	ci left: 1.192162e-01	ci right 1.283935e-01	k: 2475	n:20000
KS ci ratio: 2.123447e-02	ci left: 6.234158e-01	ci right 6.368463e-01	k: 12603	n:20000
FAM20B   20000 perm   3 sec   (5836 perm/sec)   p_kst 6.301500e-01   p_cons 1.237500e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000061/FAM20B.2_1258_20000_0.63015_0.12375_1.png
                gene_name: FAM20B
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
FAM26D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.561466e-02	ci left: 1.658291e-01	ci right 1.807618e-01	k: 1732	n:10000
Cons ci ratio: 5.856484e-02	ci left: 3.002475e-01	ci right 3.184636e-01	k: 3093	n:10000
KS ci ratio: 1.095497e-01	ci left: 1.072486e-01	ci right 1.197776e-01	k: 1134	n:10000
FAM26D   10000 perm   1 sec   (7240 perm/sec)   p_kst 1.134000e-01   p_cons 3.093000e-01   p_joint 1.732000e-01

Joint ci ratio: 8.959483e-02	ci left: 8.342314e-02	ci right 9.129730e-02	k: 1746	n:20000
Cons ci ratio: 4.438782e-02	ci left: 2.742812e-01	ci right 2.867827e-01	k: 5610	n:20000
KS ci ratio: 7.748406e-02	ci left: 1.090370e-01	ci right 1.178757e-01	k: 2268	n:20000
FAM26D   20000 perm   3 sec   (6284 perm/sec)   p_kst 1.134000e-01   p_cons 2.805000e-01   p_joint 8.730000e-02

Outputting figure to mutsig2_images.part000000000061/FAM26D.2_391_20000_0.1134_0.2805_0.0873.png
                gene_name: FAM26D
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.087 
     ci_joint_bounds_left: 0.083 
    ci_joint_bounds_right: 0.091 

Current progress: 87 percent done.
FAM3C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.601493e-02	ci left: 8.499848e-01	ci right 8.638066e-01	k: 8570	n:10000
Cons ci ratio: 6.003574e-02	ci left: 2.898383e-01	ci right 3.078790e-01	k: 2988	n:10000
KS ci ratio: 5.272375e-02	ci left: 3.465091e-01	ci right 3.653749e-01	k: 3559	n:10000
FAM3C   10000 perm   1 sec   (6756 perm/sec)   p_kst 3.559000e-01   p_cons 2.988000e-01   p_joint 8.570000e-01

Outputting figure to mutsig2_images.part000000000061/FAM3C.2_720_10000_0.3559_0.2988_0.857.png
                gene_name: FAM3C
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 89 percent done.
FAM46A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.779247e-02	ci left: 8.216784e-01	ci right 8.365294e-01	k: 8292	n:10000
Cons ci ratio: 3.956422e-02	ci left: 4.854532e-01	ci right 5.051496e-01	k: 4953	n:10000
KS ci ratio: 3.728142e-02	ci left: 5.151564e-01	ci right 5.348291e-01	k: 5250	n:10000
FAM46A   10000 perm   2 sec   (6407 perm/sec)   p_kst 5.250000e-01   p_cons 4.953000e-01   p_joint 8.292000e-01

Outputting figure to mutsig2_images.part000000000061/FAM46A.2_1337_10000_0.525_0.4953_0.8292.png
                gene_name: FAM46A
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 92 percent done.
FAM48A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.169468e-01	ci left: 9.506351e-02	ci right 1.069701e-01	k: 1009	n:10000
Cons ci ratio: 1.714031e-01	ci left: 4.542628e-02	ci right 5.403844e-02	k: 496	n:10000
KS ci ratio: 3.893634e-02	ci left: 4.934506e-01	ci right 5.131474e-01	k: 5033	n:10000
FAM48A   10000 perm   2 sec   (5988 perm/sec)   p_kst 5.033000e-01   p_cons 4.960000e-02   p_joint 1.009000e-01

Joint ci ratio: 6.241084e-02	ci left: 1.595836e-01	ci right 1.699141e-01	k: 3294	n:20000
Cons ci ratio: 1.223735e-01	ci left: 4.580631e-02	ci right 5.182574e-02	k: 975	n:20000
KS ci ratio: 2.726567e-02	ci left: 5.012456e-01	ci right 5.151520e-01	k: 10164	n:20000
FAM48A   20000 perm   4 sec   (5315 perm/sec)   p_kst 5.082000e-01   p_cons 4.875000e-02   p_joint 1.647000e-01

Joint ci ratio: 5.546460e-02	ci left: 1.387602e-01	ci right 1.467092e-01	k: 4281	n:30000
Cons ci ratio: 1.004970e-01	ci left: 4.583599e-02	ci right 5.071864e-02	k: 1447	n:30000
KS ci ratio: 2.210900e-02	ci left: 5.059927e-01	ci right 5.173384e-01	k: 15350	n:30000
FAM48A   30000 perm   6 sec   (5068 perm/sec)   p_kst 5.116667e-01   p_cons 4.823333e-02   p_joint 1.427000e-01

Joint ci ratio: 5.008560e-02	ci left: 1.294639e-01	ci right 1.361396e-01	k: 5311	n:40000
Cons ci ratio: 8.697804e-02	ci left: 4.621928e-02	ci right 5.044660e-02	k: 1932	n:40000
KS ci ratio: 1.913346e-02	ci left: 5.071133e-01	ci right 5.169350e-01	k: 20481	n:40000
FAM48A   40000 perm   8 sec   (4908 perm/sec)   p_kst 5.120250e-01   p_cons 4.830000e-02   p_joint 1.327750e-01

Outputting figure to mutsig2_images.part000000000061/FAM48A.2_2443_40000_0.51202_0.0483_0.13278.png
                gene_name: FAM48A
               theta_stop: 0.087 
                    nperm: 40000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.048 
      ci_cons_bounds_left: 0.046 
     ci_cons_bounds_right: 0.050 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 95 percent done.
FAM49A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.857181e-02	ci left: 2.377814e-01	ci right 2.547666e-01	k: 2462	n:10000
Cons ci ratio: 4.489509e-02	ci left: 4.227607e-01	ci right 4.422786e-01	k: 4325	n:10000
KS ci ratio: 8.764072e-02	ci left: 1.593447e-01	ci right 1.740500e-01	k: 1666	n:10000
FAM49A   10000 perm   1 sec   (6713 perm/sec)   p_kst 1.666000e-01   p_cons 4.325000e-01   p_joint 2.462000e-01

Outputting figure to mutsig2_images.part000000000061/FAM49A.2_1012_10000_0.1666_0.4325_0.2462.png
                gene_name: FAM49A
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 97 percent done.
FAM50A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.075972e-02	ci left: 2.848834e-01	ci right 3.028368e-01	k: 2938	n:10000
Cons ci ratio: 1.098228e-01	ci left: 1.067607e-01	ci right 1.192658e-01	k: 1129	n:10000
KS ci ratio: 1.031447e-01	ci left: 1.196532e-01	ci right 1.327654e-01	k: 1261	n:10000
FAM50A   10000 perm   2 sec   (6631 perm/sec)   p_kst 1.261000e-01   p_cons 1.129000e-01   p_joint 2.938000e-01

Joint ci ratio: 5.175471e-02	ci left: 2.170980e-01	ci right 2.286826e-01	k: 4457	n:20000
Cons ci ratio: 7.972081e-02	ci left: 1.035342e-01	ci right 1.121802e-01	k: 2156	n:20000
KS ci ratio: 7.273787e-02	ci left: 1.221687e-01	ci right 1.314401e-01	k: 2535	n:20000
FAM50A   20000 perm   3 sec   (5871 perm/sec)   p_kst 1.267500e-01   p_cons 1.078000e-01   p_joint 2.228500e-01

Outputting figure to mutsig2_images.part000000000061/FAM50A.2_1072_20000_0.12675_0.1078_0.22285.png
                gene_name: FAM50A
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000061
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 61 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1640>
Subject: Job 8004068: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1640>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000062> was used as the working directory.
Started at Sun Nov 11 15:05:46 2012
Results reported at Sun Nov 11 15:12:59 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000062.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000062.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 62  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000062.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    469.58 sec.
    Max Memory :      4721 MB
    Max Swap   :      7100 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
62
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 62
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 62: processing genes 5520 - 5609
Calculating significance of each gene.
Using projection method.
5520	FAM53B	4.155939e-01
5521	FAM53C	2.744158e-01
5522	FAM54A	7.152841e-01
5523	FAM54B	1
5524	FAM55A	4.339574e-01
5525	FAM55B	1
5526	FAM55C	5.115438e-01
5527	FAM55D	2.851330e-01
5528	FAM57A	2.746025e-01
5529	FAM57B	3.061200e-01
5530	FAM58A	1
5531	FAM58B	3.436377e-03
5532	FAM59A	4.816126e-01
5533	FAM5B	2.527418e-05
5534	FAM5C	1.068704e-09
5535	FAM60A	4.468904e-01
5536	FAM63A	8.794828e-01
5537	FAM63B	8.564118e-01
5538	FAM64A	1
5539	FAM65A	8.963800e-01
5540	FAM65B	6.184910e-01
5541	FAM65C	9.373407e-01
5542	FAM69A	1
5543	FAM69B	5.945819e-01
5544	FAM69C	1
5545	FAM70A	6.106756e-01
5546	FAM70B	1
5547	FAM71A	1.619083e-01
5548	FAM71B	1.971361e-03
5549	FAM71C	2.990713e-01
5550	FAM71D	1
5551	FAM71E1	5.273773e-01
5552	FAM71F1	5.261350e-01
5553	FAM71F2	2.540477e-01
5554	FAM72A	1
5555	FAM72B	1
5556	FAM72D	1
5557	FAM73A	3.602157e-01
5558	FAM73B	1
5559	FAM75A6	1
5560	FAM75C1	1
5561	FAM76A	6.734547e-01
5562	FAM76B	5.861676e-01
5563	FAM78A	1
5564	FAM78B	1
5565	FAM81A	3.936861e-01
5566	FAM81B	1
5567	FAM82A1	9.134713e-01
5568	FAM82A2	7.051212e-01
5569	FAM82B	5.863078e-01
5570	FAM83A	7.944434e-01
5571	FAM83B	9.400543e-01
5572	FAM83C	1
5573	FAM83D	4.822402e-01
5574	FAM83E	4.972267e-01
5575	FAM83F	1
5576	FAM83G	9.396297e-01
5577	FAM83H	8.986302e-01
5578	FAM84A	8.653444e-02
5579	FAM84B	1
5580	FAM86A	2.059552e-01
5581	FAM86B1	1
5582	FAM86B2	1
5583	FAM86C	2.085587e-01
5584	FAM89A	1
5585	FAM89B	1
5586	FAM8A1	1.595526e-01
5587	FAM90A1	7.440741e-01
5588	FAM91A1	9.646064e-01
5589	FAM92A1	1
5590	FAM92B	1
5591	FAM96A	5.316263e-01
5592	FAM96B	1
5593	FAM98A	1
5594	FAM98B	1
5595	FAM98C	2.306567e-01
5596	FAM9A	1
5597	FAM9B	5.050720e-01
5598	FAM9C	1
5599	FANCA	9.100838e-01
5600	FANCB	4.531053e-01
5601	FANCC	5.437143e-01
5602	FANCD2	1
5603	FANCE	1
5604	FANCF	2.750586e-01
5605	FANCG	6.822154e-01
5606	FANCI	1
5607	FANCL	1
5608	FANCM	5.952663e-01
5609	FANK1	1
Done

Running MutSig 2:
Scatter job 62: processing genes 5520 - 5609
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
FAM5C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.485634e-03	ci left: 9.611050e-01	ci right 9.684210e-01	k: 9649	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
FAM5C   10000 perm   2 sec   (4616 perm/sec)   p_kst 1   p_cons 9.649000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000062/FAM5C.28_2329_10000_1_0.9649_1.png
                gene_name: FAM5C
               theta_stop: 0.0075 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 3 percent done.
FAM5B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.538644e-02	ci left: 6.954487e-01	ci right 7.134321e-01	k: 7045	n:10000
Cons ci ratio: 6.496620e-02	ci left: 2.581502e-01	ci right 2.755858e-01	k: 2668	n:10000
KS ci ratio: 1.360105e-02	ci left: 8.863668e-01	ci right 8.986035e-01	k: 8926	n:10000
FAM5B   10000 perm   2 sec   (5343 perm/sec)   p_kst 8.926000e-01   p_cons 2.668000e-01   p_joint 7.045000e-01

Outputting figure to mutsig2_images.part000000000062/FAM5B.15_2380_10000_0.8926_0.2668_0.7045.png
                gene_name: FAM5B
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.71 

Current progress: 5 percent done.
FAM71B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.993693e-02	ci left: 7.864452e-01	ci right 8.023829e-01	k: 7945	n:10000
Cons ci ratio: 2.191363e-02	ci left: 7.534265e-01	ci right 7.702207e-01	k: 7619	n:10000
KS ci ratio: 3.612419e-02	ci left: 5.308720e-01	ci right 5.505042e-01	k: 5407	n:10000
FAM71B   10000 perm   2 sec   (5413 perm/sec)   p_kst 5.407000e-01   p_cons 7.619000e-01   p_joint 7.945000e-01

Outputting figure to mutsig2_images.part000000000062/FAM71B.9_1826_10000_0.5407_0.7619_0.7945.png
                gene_name: FAM71B
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 8 percent done.
FAM83B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.809499e-02	ci left: 2.403508e-01	ci right 2.573957e-01	k: 2488	n:10000
Cons ci ratio: 1.474582e-01	ci left: 6.111415e-02	ci right 7.094050e-02	k: 659	n:10000
KS ci ratio: 1.875794e-02	ci left: 8.059280e-01	ci right 8.212889e-01	k: 8137	n:10000
FAM83B   10000 perm   2 sec   (4733 perm/sec)   p_kst 8.137000e-01   p_cons 6.590000e-02   p_joint 2.488000e-01

Joint ci ratio: 5.181454e-02	ci left: 2.167018e-01	ci right 2.282790e-01	k: 4449	n:20000
Cons ci ratio: 1.079979e-01	ci left: 5.845301e-02	ci right 6.517508e-02	k: 1235	n:20000
KS ci ratio: 1.344033e-02	ci left: 8.041394e-01	ci right 8.150704e-01	k: 16193	n:20000
FAM83B   20000 perm   5 sec   (4288 perm/sec)   p_kst 8.096500e-01   p_cons 6.175000e-02   p_joint 2.224500e-01

Joint ci ratio: 3.830754e-02	ci left: 2.537514e-01	ci right 2.636953e-01	k: 7761	n:30000
Cons ci ratio: 8.820587e-02	ci left: 5.903581e-02	ci right 6.451610e-02	k: 1852	n:30000
KS ci ratio: 1.094125e-02	ci left: 8.060859e-01	ci right 8.149872e-01	k: 24317	n:30000
FAM83B   30000 perm   7 sec   (4115 perm/sec)   p_kst 8.105667e-01   p_cons 6.173333e-02   p_joint 2.587000e-01

Outputting figure to mutsig2_images.part000000000062/FAM83B.9_3052_30000_0.81057_0.061733_0.2587.png
                gene_name: FAM83B
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.062 
      ci_cons_bounds_left: 0.059 
     ci_cons_bounds_right: 0.065 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 11 percent done.
FANCM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.481326e-02	ci left: 5.492026e-01	ci right 5.687630e-01	k: 5590	n:10000
Cons ci ratio: 8.083070e-02	ci left: 1.826474e-01	ci right 1.981334e-01	k: 1903	n:10000
KS ci ratio: 2.619972e-02	ci left: 6.820403e-01	ci right 7.002483e-01	k: 6912	n:10000
FANCM   10000 perm   2 sec   (4075 perm/sec)   p_kst 6.912000e-01   p_cons 1.903000e-01   p_joint 5.590000e-01

Outputting figure to mutsig2_images.part000000000062/FANCM.8_6239_10000_0.6912_0.1903_0.559.png
                gene_name: FANCM
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 14 percent done.
FAM55D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.416858e-02	ci left: 8.780732e-01	ci right 8.907019e-01	k: 8845	n:10000
Cons ci ratio: 2.289056e-03	ci left: 9.953687e-01	ci right 9.977274e-01	k: 9967	n:10000
KS ci ratio: 2.887004e-02	ci left: 6.388490e-01	ci right 6.576645e-01	k: 6483	n:10000
FAM55D   10000 perm   2 sec   (5818 perm/sec)   p_kst 6.483000e-01   p_cons 9.967000e-01   p_joint 8.845000e-01

Outputting figure to mutsig2_images.part000000000062/FAM55D.5_1655_10000_0.6483_0.9967_0.8845.png
                gene_name: FAM55D
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 16 percent done.
FAM58B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.605879e-02	ci left: 5.317732e-01	ci right 5.514025e-01	k: 5416	n:10000
Cons ci ratio: 3.260658e-02	ci left: 5.812885e-01	ci right 6.006585e-01	k: 5910	n:10000
KS ci ratio: 5.004015e-02	ci left: 3.706717e-01	ci right 3.897981e-01	k: 3802	n:10000
FAM58B   10000 perm   2 sec   (5897 perm/sec)   p_kst 3.802000e-01   p_cons 5.910000e-01   p_joint 5.416000e-01

Outputting figure to mutsig2_images.part000000000062/FAM58B.5_763_10000_0.3802_0.591_0.5416.png
                gene_name: FAM58B
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 19 percent done.
FAM83C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.827576e-02	ci left: 1.925924e-01	ci right 2.083825e-01	k: 2004	n:10000
Cons ci ratio: 2.767703e-02	ci left: 6.579673e-01	ci right 6.765351e-01	k: 6673	n:10000
KS ci ratio: 1.308937e-01	ci left: 7.688883e-02	ci right 8.775595e-02	k: 822	n:10000
FAM83C   10000 perm   2 sec   (5254 perm/sec)   p_kst 8.220000e-02   p_cons 6.673000e-01   p_joint 2.004000e-01

Joint ci ratio: 5.372084e-02	ci left: 2.045706e-01	ci right 2.159138e-01	k: 4204	n:20000
Cons ci ratio: 2.024079e-02	ci left: 6.455526e-01	ci right 6.588032e-01	k: 13044	n:20000
KS ci ratio: 9.298930e-02	ci left: 7.779311e-02	ci right 8.542905e-02	k: 1631	n:20000
FAM83C   20000 perm   4 sec   (4852 perm/sec)   p_kst 8.155000e-02   p_cons 6.522000e-01   p_joint 2.102000e-01

Outputting figure to mutsig2_images.part000000000062/FAM83C.5_2260_20000_0.08155_0.6522_0.2102.png
                gene_name: FAM83C
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.082 
        ci_ks_bounds_left: 0.078 
       ci_ks_bounds_right: 0.085 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 22 percent done.
FAM83D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.134967e-02	ci left: 1.483504e-01	ci right 1.626509e-01	k: 1554	n:10000
Cons ci ratio: 4.957627e-02	ci left: 3.750495e-01	ci right 3.942177e-01	k: 3846	n:10000
KS ci ratio: 1.209147e-01	ci left: 8.932164e-02	ci right 1.009155e-01	k: 950	n:10000
FAM83D   10000 perm   2 sec   (5677 perm/sec)   p_kst 9.500000e-02   p_cons 3.846000e-01   p_joint 1.554000e-01

Joint ci ratio: 7.646149e-02	ci left: 1.116914e-01	ci right 1.206206e-01	k: 2322	n:20000
Cons ci ratio: 3.404769e-02	ci left: 3.917548e-01	ci right 4.053747e-01	k: 7971	n:20000
KS ci ratio: 8.572558e-02	ci left: 9.057813e-02	ci right 9.874015e-02	k: 1892	n:20000
FAM83D   20000 perm   4 sec   (5138 perm/sec)   p_kst 9.460000e-02   p_cons 3.985500e-01   p_joint 1.161000e-01

Outputting figure to mutsig2_images.part000000000062/FAM83D.5_1864_20000_0.0946_0.39855_0.1161.png
                gene_name: FAM83D
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.095 
        ci_ks_bounds_left: 0.091 
       ci_ks_bounds_right: 0.099 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 24 percent done.
FANCA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.038162e-02	ci left: 7.790450e-01	ci right 7.951874e-01	k: 7872	n:10000
Cons ci ratio: 3.209660e-02	ci left: 5.889150e-01	ci right 6.082275e-01	k: 5986	n:10000
KS ci ratio: 2.987106e-02	ci left: 6.230635e-01	ci right 6.420592e-01	k: 6326	n:10000
FANCA   10000 perm   2 sec   (4768 perm/sec)   p_kst 6.326000e-01   p_cons 5.986000e-01   p_joint 7.872000e-01

Outputting figure to mutsig2_images.part000000000062/FANCA.5_4545_10000_0.6326_0.5986_0.7872.png
                gene_name: FANCA
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 27 percent done.
FAM59A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.238439e-02	ci left: 7.455367e-01	ci right 7.625150e-01	k: 7541	n:10000
Cons ci ratio: 1.572648e-02	ci left: 8.544725e-01	ci right 8.681163e-01	k: 8614	n:10000
KS ci ratio: 3.191661e-02	ci left: 5.916250e-01	ci right 6.109159e-01	k: 6013	n:10000
FAM59A   10000 perm   2 sec   (5636 perm/sec)   p_kst 6.013000e-01   p_cons 8.614000e-01   p_joint 7.541000e-01

Outputting figure to mutsig2_images.part000000000062/FAM59A.4_2652_10000_0.6013_0.8614_0.7541.png
                gene_name: FAM59A
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.76 

Current progress: 30 percent done.
FAM71A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.040660e-02	ci left: 6.147227e-01	ci right 6.338048e-01	k: 6243	n:10000
Cons ci ratio: 1.805555e-02	ci left: 8.174085e-01	ci right 8.324018e-01	k: 8250	n:10000
KS ci ratio: 4.815110e-02	ci left: 3.888849e-01	ci right 4.081742e-01	k: 3985	n:10000
FAM71A   10000 perm   2 sec   (5842 perm/sec)   p_kst 3.985000e-01   p_cons 8.250000e-01   p_joint 6.243000e-01

Outputting figure to mutsig2_images.part000000000062/FAM71A.4_1789_10000_0.3985_0.825_0.6243.png
                gene_name: FAM71A
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 32 percent done.
FANCB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.578402e-02	ci left: 4.131910e-01	ci right 4.326539e-01	k: 4229	n:10000
Cons ci ratio: 9.927474e-03	ci left: 9.349586e-01	ci right 9.443833e-01	k: 9398	n:10000
KS ci ratio: 6.924324e-02	ci left: 2.342244e-01	ci right 2.511257e-01	k: 2426	n:10000
FANCB   10000 perm   2 sec   (5761 perm/sec)   p_kst 2.426000e-01   p_cons 9.398000e-01   p_joint 4.229000e-01

Outputting figure to mutsig2_images.part000000000062/FANCB.4_2612_10000_0.2426_0.9398_0.4229.png
                gene_name: FANCB
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 35 percent done.
FAM53C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.357336e-02	ci left: 5.670453e-01	ci right 5.865100e-01	k: 5768	n:10000
Cons ci ratio: 5.063989e-02	ci left: 3.651011e-01	ci right 3.841720e-01	k: 3746	n:10000
KS ci ratio: 2.887637e-02	ci left: 6.387484e-01	ci right 6.575652e-01	k: 6482	n:10000
FAM53C   10000 perm   2 sec   (6204 perm/sec)   p_kst 6.482000e-01   p_cons 3.746000e-01   p_joint 5.768000e-01

Outputting figure to mutsig2_images.part000000000062/FAM53C.3_1195_10000_0.6482_0.3746_0.5768.png
                gene_name: FAM53C
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 38 percent done.
FAM55C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.497592e-02	ci left: 5.468981e-01	ci right 5.664689e-01	k: 5567	n:10000
Cons ci ratio: 5.655452e-03	ci left: 9.767421e-01	ci right 9.823736e-01	k: 9797	n:10000
KS ci ratio: 4.803081e-02	ci left: 3.900798e-01	ci right 4.093787e-01	k: 3997	n:10000
FAM55C   10000 perm   2 sec   (5973 perm/sec)   p_kst 3.997000e-01   p_cons 9.797000e-01   p_joint 5.567000e-01

Outputting figure to mutsig2_images.part000000000062/FAM55C.3_1700_10000_0.3997_0.9797_0.5567.png
                gene_name: FAM55C
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 41 percent done.
FAM63A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.333015e-02	ci left: 8.902613e-01	ci right 9.023067e-01	k: 8964	n:10000
Cons ci ratio: 3.088156e-02	ci left: 6.073893e-01	ci right 6.265425e-01	k: 6170	n:10000
KS ci ratio: 1.589720e-02	ci left: 8.518204e-01	ci right 8.655699e-01	k: 8588	n:10000
FAM63A   10000 perm   2 sec   (6034 perm/sec)   p_kst 8.588000e-01   p_cons 6.170000e-01   p_joint 8.964000e-01

Outputting figure to mutsig2_images.part000000000062/FAM63A.3_1594_10000_0.8588_0.617_0.8964.png
                gene_name: FAM63A
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 43 percent done.
FAM65A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.236922e-02	ci left: 3.495901e-01	ci right 3.684921e-01	k: 3590	n:10000
Cons ci ratio: 1.192588e-01	ci left: 9.165653e-02	ci right 1.033791e-01	k: 974	n:10000
KS ci ratio: 1.876412e-02	ci left: 8.058264e-01	ci right 8.211905e-01	k: 8136	n:10000
FAM65A   10000 perm   2 sec   (5224 perm/sec)   p_kst 8.136000e-01   p_cons 9.740000e-02   p_joint 3.590000e-01

Joint ci ratio: 3.571992e-02	ci left: 3.690811e-01	ci right 3.825550e-01	k: 7516	n:20000
Cons ci ratio: 8.162098e-02	ci left: 9.916397e-02	ci right 1.076517e-01	k: 2067	n:20000
KS ci ratio: 1.326786e-02	ci left: 8.081324e-01	ci right 8.189762e-01	k: 16272	n:20000
FAM65A   20000 perm   4 sec   (4699 perm/sec)   p_kst 8.136000e-01   p_cons 1.033500e-01   p_joint 3.758000e-01

Outputting figure to mutsig2_images.part000000000062/FAM65A.3_3744_20000_0.8136_0.10335_0.3758.png
                gene_name: FAM65A
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.099 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.38 

Current progress: 46 percent done.
FAM65C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.743137e-02	ci left: 1.960405e-01	ci right 2.119323e-01	k: 2039	n:10000
Cons ci ratio: 1.518969e-03	ci left: 9.976522e-01	ci right 9.992344e-01	k: 9986	n:10000
KS ci ratio: 1.286084e-01	ci left: 7.950840e-02	ci right 9.053475e-02	k: 849	n:10000
FAM65C   10000 perm   2 sec   (5758 perm/sec)   p_kst 8.490000e-02   p_cons 9.986000e-01   p_joint 2.039000e-01

Joint ci ratio: 6.076237e-02	ci left: 1.669904e-01	ci right 1.775051e-01	k: 3444	n:20000
Cons ci ratio: 1.126723e-03	ci left: 9.977420e-01	ci right 9.989054e-01	k: 19968	n:20000
KS ci ratio: 8.973561e-02	ci left: 8.317825e-02	ci right 9.104227e-02	k: 1741	n:20000
FAM65C   20000 perm   4 sec   (5209 perm/sec)   p_kst 8.705000e-02   p_cons 9.984000e-01   p_joint 1.722000e-01

Outputting figure to mutsig2_images.part000000000062/FAM65C.3_2925_20000_0.08705_0.9984_0.1722.png
                gene_name: FAM65C
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.087 
        ci_ks_bounds_left: 0.083 
       ci_ks_bounds_right: 0.091 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 49 percent done.
FAM73A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.965125e-02	ci left: 2.925144e-01	ci right 3.106013e-01	k: 3015	n:10000
Cons ci ratio: 1.001251e-01	ci left: 1.262063e-01	ci right 1.396083e-01	k: 1328	n:10000
KS ci ratio: 6.065741e-02	ci left: 2.855770e-01	ci right 3.035428e-01	k: 2945	n:10000
FAM73A   10000 perm   2 sec   (6541 perm/sec)   p_kst 2.945000e-01   p_cons 1.328000e-01   p_joint 3.015000e-01

Joint ci ratio: 5.958532e-02	ci left: 1.725726e-01	ci right 1.832212e-01	k: 3557	n:20000
Cons ci ratio: 7.046446e-02	ci left: 1.292581e-01	ci right 1.387486e-01	k: 2679	n:20000
KS ci ratio: 4.298450e-02	ci left: 2.873435e-01	ci right 3.000165e-01	k: 5873	n:20000
FAM73A   20000 perm   3 sec   (5750 perm/sec)   p_kst 2.936500e-01   p_cons 1.339500e-01   p_joint 1.778500e-01

Outputting figure to mutsig2_images.part000000000062/FAM73A.3_1963_20000_0.29365_0.13395_0.17785.png
                gene_name: FAM73A
               theta_stop: 0.070 
                    nperm: 20000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 51 percent done.
FAM86A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.079888e-01	ci left: 3.072413e-02	ci right 3.795045e-02	k: 342	n:10000
Cons ci ratio: 4.951351e-02	ci left: 3.756466e-01	ci right 3.948203e-01	k: 3852	n:10000
KS ci ratio: 3.900160e-01	ci left: 8.053309e-03	ci right 1.203990e-02	k: 99	n:10000
FAM86A   10000 perm   2 sec   (6407 perm/sec)   p_kst 9.900000e-03   p_cons 3.852000e-01   p_joint 3.420000e-02

Joint ci ratio: 2.309462e-01	ci left: 1.255904e-02	ci right 1.588439e-02	k: 283	n:20000
Cons ci ratio: 3.489683e-02	ci left: 3.800423e-01	ci right 3.935907e-01	k: 7736	n:20000
KS ci ratio: 2.793383e-01	ci left: 8.388326e-03	ci right 1.115700e-02	k: 194	n:20000
FAM86A   20000 perm   4 sec   (5689 perm/sec)   p_kst 9.700000e-03   p_cons 3.868000e-01   p_joint 1.415000e-02

Joint ci ratio: 1.821674e-01	ci left: 1.381413e-02	ci right 1.661424e-02	k: 455	n:30000
Cons ci ratio: 2.850209e-02	ci left: 3.811505e-01	ci right 3.922048e-01	k: 11600	n:30000
KS ci ratio: 2.271026e-01	ci left: 8.716294e-03	ci right 1.098015e-02	k: 294	n:30000
FAM86A   30000 perm   6 sec   (5418 perm/sec)   p_kst 9.800000e-03   p_cons 3.866667e-01   p_joint 1.516667e-02

Joint ci ratio: 1.527379e-01	ci left: 1.496149e-02	ci right 1.745946e-02	k: 647	n:40000
Cons ci ratio: 2.469262e-02	ci left: 3.817239e-01	ci right 3.912926e-01	k: 15460	n:40000
KS ci ratio: 1.977807e-01	ci left: 8.762746e-03	ci right 1.070942e-02	k: 388	n:40000
FAM86A   40000 perm   8 sec   (5243 perm/sec)   p_kst 9.700000e-03   p_cons 3.865000e-01   p_joint 1.617500e-02

Joint ci ratio: 1.365276e-01	ci left: 1.511160e-02	ci right 1.734508e-02	k: 810	n:50000
Cons ci ratio: 2.141365e-02	ci left: 3.969595e-01	ci right 4.055719e-01	k: 20063	n:50000
KS ci ratio: 1.744273e-01	ci left: 9.127276e-03	ci right 1.089031e-02	k: 499	n:50000
FAM86A   50000 perm   10 sec   (5075 perm/sec)   p_kst 9.980000e-03   p_cons 4.012600e-01   p_joint 1.620000e-02

Joint ci ratio: 1.026758e-01	ci left: 2.249761e-02	ci right 2.494875e-02	k: 1422	n:60000
Cons ci ratio: 1.949294e-02	ci left: 3.986890e-01	ci right 4.065538e-01	k: 24157	n:60000
KS ci ratio: 1.593641e-01	ci left: 9.187279e-03	ci right 1.079398e-02	k: 598	n:60000
FAM86A   60000 perm   12 sec   (4935 perm/sec)   p_kst 9.966667e-03   p_cons 4.026167e-01   p_joint 2.370000e-02

Joint ci ratio: 8.738655e-02	ci left: 2.672043e-02	ci right 2.917605e-02	k: 1955	n:70000
Cons ci ratio: 1.801822e-02	ci left: 3.997485e-01	ci right 4.070310e-01	k: 28237	n:70000
KS ci ratio: 1.478456e-01	ci left: 9.207325e-03	ci right 1.069086e-02	k: 695	n:70000
FAM86A   70000 perm   15 sec   (4797 perm/sec)   p_kst 9.928571e-03   p_cons 4.033857e-01   p_joint 2.792857e-02

Joint ci ratio: 9.451325e-02	ci left: 2.005420e-02	ci right 2.205575e-02	k: 1683	n:80000
Cons ci ratio: 1.684880e-02	ci left: 4.001476e-01	ci right 4.069594e-01	k: 32284	n:80000
KS ci ratio: 1.393115e-01	ci left: 9.116886e-03	ci right 1.049401e-02	k: 783	n:80000
FAM86A   80000 perm   17 sec   (4676 perm/sec)   p_kst 9.787500e-03   p_cons 4.035500e-01   p_joint 2.103750e-02

Joint ci ratio: 1.008461e-01	ci left: 1.567780e-02	ci right 1.735357e-02	k: 1485	n:90000
Cons ci ratio: 1.589093e-02	ci left: 4.001703e-01	ci right 4.065914e-01	k: 36304	n:90000
KS ci ratio: 1.315704e-01	ci left: 9.123708e-03	ci right 1.041929e-02	k: 878	n:90000
FAM86A   90000 perm   20 sec   (4580 perm/sec)   p_kst 9.755556e-03   p_cons 4.033778e-01   p_joint 1.650000e-02

Joint ci ratio: 8.455584e-02	ci left: 2.014960e-02	ci right 2.193833e-02	k: 2103	n:100000
Cons ci ratio: 1.506822e-02	ci left: 4.005670e-01	ci right 4.066586e-01	k: 40361	n:100000
KS ci ratio: 1.251209e-01	ci left: 9.111484e-03	ci right 1.033721e-02	k: 971	n:100000
FAM86A   100000 perm   22 sec   (4457 perm/sec)   p_kst 9.710000e-03   p_cons 4.036100e-01   p_joint 2.103000e-02

Joint ci ratio: 9.339192e-02	ci left: 1.502691e-02	ci right 1.650787e-02	k: 1733	n:110000
Cons ci ratio: 1.437355e-02	ci left: 4.004899e-01	ci right 4.062970e-01	k: 44373	n:110000
KS ci ratio: 1.190286e-01	ci left: 9.182154e-03	ci right 1.035300e-02	k: 1073	n:110000
FAM86A   110000 perm   25 sec   (4377 perm/sec)   p_kst 9.754545e-03   p_cons 4.033909e-01   p_joint 1.575455e-02

Joint ci ratio: 8.974521e-02	ci left: 1.494716e-02	ci right 1.635972e-02	k: 1877	n:120000
Cons ci ratio: 1.374211e-02	ci left: 4.012968e-01	ci right 4.068579e-01	k: 48489	n:120000
KS ci ratio: 1.141403e-01	ci left: 9.177467e-03	ci right 1.029642e-02	k: 1167	n:120000
FAM86A   120000 perm   28 sec   (4298 perm/sec)   p_kst 9.725000e-03   p_cons 4.040750e-01   p_joint 1.564167e-02

Joint ci ratio: 8.636470e-02	ci left: 1.492581e-02	ci right 1.628054e-02	k: 2027	n:130000
Cons ci ratio: 1.320802e-02	ci left: 4.012233e-01	ci right 4.065656e-01	k: 52506	n:130000
KS ci ratio: 1.098966e-01	ci left: 9.159369e-03	ci right 1.023190e-02	k: 1259	n:130000
FAM86A   130000 perm   31 sec   (4215 perm/sec)   p_kst 9.684615e-03   p_cons 4.038923e-01   p_joint 1.559231e-02

Joint ci ratio: 8.652188e-02	ci left: 1.382440e-02	ci right 1.508154e-02	k: 2022	n:140000
Cons ci ratio: 1.271153e-02	ci left: 4.019275e-01	ci right 4.070764e-01	k: 56630	n:140000
KS ci ratio: 1.051166e-01	ci left: 9.318417e-03	ci right 1.035918e-02	k: 1376	n:140000
FAM86A   140000 perm   34 sec   (4145 perm/sec)   p_kst 9.828571e-03   p_cons 4.045000e-01   p_joint 1.444286e-02

Joint ci ratio: 8.320913e-02	ci left: 1.397295e-02	ci right 1.519259e-02	k: 2186	n:150000
Cons ci ratio: 1.227423e-02	ci left: 4.022612e-01	ci right 4.072358e-01	k: 60712	n:150000
KS ci ratio: 1.014605e-01	ci left: 9.353138e-03	ci right 1.035928e-02	k: 1477	n:150000
FAM86A   150000 perm   37 sec   (4078 perm/sec)   p_kst 9.846667e-03   p_cons 4.047467e-01   p_joint 1.457333e-02

Joint ci ratio: 7.747065e-02	ci left: 1.513946e-02	ci right 1.636568e-02	k: 2519	n:160000
Cons ci ratio: 1.187254e-02	ci left: 4.028243e-01	ci right 4.076416e-01	k: 64837	n:160000
KS ci ratio: 9.860368e-02	ci left: 9.298700e-03	ci right 1.026919e-02	k: 1564	n:160000
FAM86A   160000 perm   40 sec   (4013 perm/sec)   p_kst 9.775000e-03   p_cons 4.052312e-01   p_joint 1.574375e-02

Outputting figure to mutsig2_images.part000000000062/FAM86A.3_1025_160000_0.009775_0.40523_0.015744.png
                gene_name: FAM86A
               theta_stop: 0.099 
                    nperm: 160000 
                     p_ks: 0.0098 
        ci_ks_bounds_left: 0.0093 
       ci_ks_bounds_right: 0.010 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.016 
     ci_joint_bounds_left: 0.015 
    ci_joint_bounds_right: 0.016 

Current progress: 54 percent done.
FAM98C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.212673e-01	ci left: 8.883535e-02	ci right 1.004021e-01	k: 945	n:10000
Cons ci ratio: 1.150929e-02	ci left: 9.152306e-01	ci right 9.259229e-01	k: 9207	n:10000
KS ci ratio: 1.683940e-01	ci left: 4.705735e-02	ci right 5.580631e-02	k: 513	n:10000
FAM98C   10000 perm   2 sec   (6383 perm/sec)   p_kst 5.130000e-02   p_cons 9.207000e-01   p_joint 9.450000e-02

Joint ci ratio: 5.308208e-02	ci left: 2.085310e-01	ci right 2.199522e-01	k: 4284	n:20000
Cons ci ratio: 8.263972e-03	ci left: 9.145199e-01	ci right 9.221580e-01	k: 18368	n:20000
KS ci ratio: 1.204400e-01	ci left: 4.726291e-02	ci right 5.336867e-02	k: 1005	n:20000
FAM98C   20000 perm   4 sec   (5641 perm/sec)   p_kst 5.025000e-02   p_cons 9.184000e-01   p_joint 2.142000e-01

Joint ci ratio: 5.469216e-02	ci left: 1.421868e-01	ci right 1.502152e-01	k: 4385	n:30000
Cons ci ratio: 7.041291e-03	ci left: 9.085004e-01	ci right 9.149529e-01	k: 27353	n:30000
KS ci ratio: 9.910257e-02	ci left: 4.710509e-02	ci right 5.204928e-02	k: 1486	n:30000
FAM98C   30000 perm   6 sec   (5363 perm/sec)   p_kst 4.953333e-02   p_cons 9.117667e-01   p_joint 1.461667e-01

Outputting figure to mutsig2_images.part000000000062/FAM98C.3_1082_30000_0.049533_0.91177_0.14617.png
                gene_name: FAM98C
               theta_stop: 0.099 
                    nperm: 30000 
                     p_ks: 0.050 
        ci_ks_bounds_left: 0.047 
       ci_ks_bounds_right: 0.052 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 57 percent done.
FANCF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.258860e-01	ci left: 6.616170e-03	ci right 1.027885e-02	k: 83	n:10000
Cons ci ratio: 3.083799e-01	ci left: 1.344771e-02	ci right 1.844006e-02	k: 158	n:10000
KS ci ratio: 1.240382e-01	ci left: 8.514113e-02	ci right 9.649855e-02	k: 907	n:10000
FANCF   10000 perm   2 sec   (6370 perm/sec)   p_kst 9.070000e-02   p_cons 1.580000e-02   p_joint 8.300000e-03

Joint ci ratio: 2.564170e-01	ci left: 1.006870e-02	ci right 1.307582e-02	k: 230	n:20000
Cons ci ratio: 2.253759e-01	ci left: 1.321953e-02	ci right 1.662363e-02	k: 297	n:20000
KS ci ratio: 8.755103e-02	ci left: 8.709768e-02	ci right 9.512166e-02	k: 1821	n:20000
FANCF   20000 perm   4 sec   (5616 perm/sec)   p_kst 9.105000e-02   p_cons 1.485000e-02   p_joint 1.150000e-02

Joint ci ratio: 2.083036e-01	ci left: 1.045075e-02	ci right 1.291184e-02	k: 349	n:30000
Cons ci ratio: 1.821674e-01	ci left: 1.381413e-02	ci right 1.661424e-02	k: 455	n:30000
KS ci ratio: 7.011107e-02	ci left: 9.104853e-02	ci right 9.769693e-02	k: 2830	n:30000
FANCF   30000 perm   6 sec   (5335 perm/sec)   p_kst 9.433333e-02   p_cons 1.516667e-02   p_joint 1.163333e-02

Joint ci ratio: 1.891328e-01	ci left: 9.619560e-03	ci right 1.165242e-02	k: 424	n:40000
Cons ci ratio: 1.600497e-01	ci left: 1.359145e-02	ci right 1.597975e-02	k: 590	n:40000
KS ci ratio: 6.080418e-02	ci left: 9.125580e-02	ci right 9.700327e-02	k: 3764	n:40000
FANCF   40000 perm   8 sec   (5151 perm/sec)   p_kst 9.410000e-02   p_cons 1.475000e-02   p_joint 1.060000e-02

Joint ci ratio: 1.944787e-01	ci left: 7.275890e-03	ci right 8.862022e-03	k: 402	n:50000
Cons ci ratio: 1.449306e-01	ci left: 1.337404e-02	ci right 1.548289e-02	k: 720	n:50000
KS ci ratio: 5.427211e-02	ci left: 9.191005e-02	ci right 9.705714e-02	k: 4723	n:50000
FANCF   50000 perm   10 sec   (5013 perm/sec)   p_kst 9.446000e-02   p_cons 1.440000e-02   p_joint 8.040000e-03

Joint ci ratio: 1.031595e-01	ci left: 2.228640e-02	ci right 2.472666e-02	k: 1409	n:60000
Cons ci ratio: 1.324742e-01	ci left: 1.342972e-02	ci right 1.535100e-02	k: 862	n:60000
KS ci ratio: 4.962474e-02	ci left: 9.185755e-02	ci right 9.654845e-02	k: 5651	n:60000
FANCF   60000 perm   12 sec   (4897 perm/sec)   p_kst 9.418333e-02   p_cons 1.436667e-02   p_joint 2.348333e-02

Joint ci ratio: 1.164552e-01	ci left: 1.500019e-02	ci right 1.686882e-02	k: 1114	n:70000
Cons ci ratio: 1.232595e-01	ci left: 1.336427e-02	ci right 1.513348e-02	k: 996	n:70000
KS ci ratio: 4.587837e-02	ci left: 9.227200e-02	ci right 9.661883e-02	k: 6610	n:70000
FANCF   70000 perm   15 sec   (4794 perm/sec)   p_kst 9.442857e-02   p_cons 1.422857e-02   p_joint 1.591429e-02

Joint ci ratio: 1.201186e-01	ci left: 1.234779e-02	ci right 1.393780e-02	k: 1050	n:80000
Cons ci ratio: 1.163089e-01	ci left: 1.318512e-02	ci right 1.482541e-02	k: 1119	n:80000
KS ci ratio: 4.296063e-02	ci left: 9.223385e-02	ci right 9.629563e-02	k: 7540	n:80000
FANCF   80000 perm   17 sec   (4694 perm/sec)   p_kst 9.425000e-02   p_cons 1.398750e-02   p_joint 1.312500e-02

Joint ci ratio: 1.008116e-01	ci left: 1.568864e-02	ci right 1.736496e-02	k: 1486	n:90000
Cons ci ratio: 1.090878e-01	ci left: 1.337228e-02	ci right 1.492593e-02	k: 1272	n:90000
KS ci ratio: 4.030630e-02	ci left: 9.317997e-02	ci right 9.702395e-02	k: 8558	n:90000
FANCF   90000 perm   20 sec   (4612 perm/sec)   p_kst 9.508889e-02   p_cons 1.413333e-02   p_joint 1.651111e-02

Joint ci ratio: 9.967848e-02	ci left: 1.447029e-02	ci right 1.599802e-02	k: 1522	n:100000
Cons ci ratio: 1.036551e-01	ci left: 1.336862e-02	ci right 1.483977e-02	k: 1409	n:100000
KS ci ratio: 3.817364e-02	ci left: 9.356617e-02	ci right 9.721733e-02	k: 9538	n:100000
FANCF   100000 perm   22 sec   (4539 perm/sec)   p_kst 9.538000e-02   p_cons 1.409000e-02   p_joint 1.522000e-02

Joint ci ratio: 9.236890e-02	ci left: 1.536446e-02	ci right 1.686121e-02	k: 1771	n:110000
Cons ci ratio: 9.863800e-02	ci left: 1.345588e-02	ci right 1.486081e-02	k: 1556	n:110000
KS ci ratio: 3.638355e-02	ci left: 9.371520e-02	ci right 9.719707e-02	k: 10499	n:110000
FANCF   110000 perm   25 sec   (4465 perm/sec)   p_kst 9.544545e-02   p_cons 1.414545e-02   p_joint 1.610000e-02

Outputting figure to mutsig2_images.part000000000062/FANCF.3_1129_110000_0.095445_0.014145_0.0161.png
                gene_name: FANCF
               theta_stop: 0.099 
                    nperm: 110000 
                     p_ks: 0.095 
        ci_ks_bounds_left: 0.094 
       ci_ks_bounds_right: 0.097 
                   p_cons: 0.014 
      ci_cons_bounds_left: 0.013 
     ci_cons_bounds_right: 0.015 
                  p_joint: 0.016 
     ci_joint_bounds_left: 0.015 
    ci_joint_bounds_right: 0.017 

Current progress: 59 percent done.
FANK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.408683e-01	ci left: 2.268733e-02	ci right 2.899301e-02	k: 257	n:10000
Cons ci ratio: 2.432992e-01	ci left: 2.221701e-02	ci right 2.846368e-02	k: 252	n:10000
KS ci ratio: 8.889150e-02	ci left: 1.555149e-01	ci right 1.700821e-01	k: 1627	n:10000
FANK1   10000 perm   2 sec   (6592 perm/sec)   p_kst 1.627000e-01   p_cons 2.520000e-02   p_joint 2.570000e-02

Joint ci ratio: 1.221762e-01	ci left: 4.595193e-02	ci right 5.198006e-02	k: 978	n:20000
Cons ci ratio: 1.734545e-01	ci left: 2.273688e-02	ci right 2.710273e-02	k: 497	n:20000
KS ci ratio: 6.369996e-02	ci left: 1.541050e-01	ci right 1.642943e-01	k: 3183	n:20000
FANK1   20000 perm   3 sec   (5819 perm/sec)   p_kst 1.591500e-01   p_cons 2.485000e-02   p_joint 4.890000e-02

Joint ci ratio: 1.577530e-01	ci left: 1.857388e-02	ci right 2.178665e-02	k: 604	n:30000
Cons ci ratio: 1.423115e-01	ci left: 2.290880e-02	ci right 2.645073e-02	k: 739	n:30000
KS ci ratio: 5.196578e-02	ci left: 1.552743e-01	ci right 1.635918e-01	k: 4782	n:30000
FANK1   30000 perm   5 sec   (5519 perm/sec)   p_kst 1.594000e-01   p_cons 2.463333e-02   p_joint 2.013333e-02

Joint ci ratio: 1.038023e-01	ci left: 3.263531e-02	ci right 3.623269e-02	k: 1376	n:40000
Cons ci ratio: 1.249885e-01	ci left: 2.249804e-02	ci right 2.552160e-02	k: 959	n:40000
KS ci ratio: 4.476327e-02	ci left: 1.572618e-01	ci right 1.644875e-01	k: 6434	n:40000
FANK1   40000 perm   8 sec   (5318 perm/sec)   p_kst 1.608500e-01   p_cons 2.397500e-02   p_joint 3.440000e-02

Joint ci ratio: 9.711020e-02	ci left: 3.002533e-02	ci right 3.310937e-02	k: 1577	n:50000
Cons ci ratio: 1.113663e-01	ci left: 2.283182e-02	ci right 2.554381e-02	k: 1208	n:50000
KS ci ratio: 4.011707e-02	ci left: 1.571138e-01	ci right 1.635657e-01	k: 8016	n:50000
FANK1   50000 perm   10 sec   (5168 perm/sec)   p_kst 1.603200e-01   p_cons 2.416000e-02   p_joint 3.154000e-02

Joint ci ratio: 9.279383e-02	ci left: 2.754145e-02	ci right 3.023771e-02	k: 1732	n:60000
Cons ci ratio: 1.007000e-01	ci left: 2.339150e-02	ci right 2.588810e-02	k: 1477	n:60000
KS ci ratio: 3.667260e-02	ci left: 1.570251e-01	ci right 1.629078e-01	k: 9597	n:60000
FANK1   60000 perm   12 sec   (5037 perm/sec)   p_kst 1.599500e-01   p_cons 2.461667e-02   p_joint 2.886667e-02

Joint ci ratio: 7.138395e-02	ci left: 3.982380e-02	ci right 4.278581e-02	k: 2890	n:70000
Cons ci ratio: 9.285359e-02	ci left: 2.367450e-02	ci right 2.599369e-02	k: 1737	n:70000
KS ci ratio: 3.425070e-02	ci left: 1.549221e-01	ci right 1.603349e-01	k: 11033	n:70000
FANK1   70000 perm   14 sec   (4925 perm/sec)   p_kst 1.576143e-01   p_cons 2.481429e-02   p_joint 4.128571e-02

Outputting figure to mutsig2_images.part000000000062/FANK1.3_1082_70000_0.15761_0.024814_0.041286.png
                gene_name: FANK1
               theta_stop: 0.093 
                    nperm: 70000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.025 
      ci_cons_bounds_left: 0.024 
     ci_cons_bounds_right: 0.026 
                  p_joint: 0.041 
     ci_joint_bounds_left: 0.040 
    ci_joint_bounds_right: 0.043 

Current progress: 62 percent done.
FAM53B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.044745e-03	ci left: 9.811299e-01	ci right 9.861827e-01	k: 9838	n:10000
Cons ci ratio: 3.799000e-02	ci left: 5.057516e-01	ci right 5.254393e-01	k: 5156	n:10000
KS ci ratio: 2.683359e-02	ci left: 6.716624e-01	ci right 6.900322e-01	k: 6809	n:10000
FAM53B   10000 perm   2 sec   (6611 perm/sec)   p_kst 6.809000e-01   p_cons 5.156000e-01   p_joint 9.838000e-01

Outputting figure to mutsig2_images.part000000000062/FAM53B.2_1285_10000_0.6809_0.5156_0.9838.png
                gene_name: FAM53B
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 65 percent done.
FAM55A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.383594e-01	ci left: 6.913757e-02	ci right 7.951204e-02	k: 742	n:10000
Cons ci ratio: 2.064358e-01	ci left: 3.119896e-02	ci right 3.847528e-02	k: 347	n:10000
KS ci ratio: 1.633357e-02	ci left: 8.449897e-01	ci right 8.590046e-01	k: 8521	n:10000
FAM55A   10000 perm   2 sec   (6660 perm/sec)   p_kst 8.521000e-01   p_cons 3.470000e-02   p_joint 7.420000e-02

Joint ci ratio: 9.516495e-02	ci left: 7.446665e-02	ci right 8.195653e-02	k: 1563	n:20000
Cons ci ratio: 1.436398e-01	ci left: 3.331605e-02	ci right 3.852000e-02	k: 717	n:20000
KS ci ratio: 1.137422e-02	ci left: 8.509561e-01	ci right 8.607402e-01	k: 17118	n:20000
FAM55A   20000 perm   3 sec   (5873 perm/sec)   p_kst 8.559000e-01   p_cons 3.585000e-02   p_joint 7.815000e-02

Joint ci ratio: 5.740248e-02	ci left: 1.306580e-01	ci right 1.384129e-01	k: 4035	n:30000
Cons ci ratio: 1.169449e-01	ci left: 3.398512e-02	ci right 3.823866e-02	k: 1082	n:30000
KS ci ratio: 9.301849e-03	ci left: 8.514703e-01	ci right 8.594607e-01	k: 25665	n:30000
FAM55A   30000 perm   5 sec   (5548 perm/sec)   p_kst 8.555000e-01   p_cons 3.606667e-02   p_joint 1.345000e-01

Joint ci ratio: 1.026498e-01	ci left: 3.336659e-02	ci right 3.700130e-02	k: 1406	n:40000
Cons ci ratio: 1.117373e-01	ci left: 2.817971e-02	ci right 3.153900e-02	k: 1193	n:40000
KS ci ratio: 8.018044e-03	ci left: 8.531775e-01	ci right 8.600707e-01	k: 34266	n:40000
FAM55A   40000 perm   7 sec   (5354 perm/sec)   p_kst 8.566500e-01   p_cons 2.982500e-02   p_joint 3.515000e-02

Joint ci ratio: 9.172521e-02	ci left: 3.362129e-02	ci right 3.687296e-02	k: 1761	n:50000
Cons ci ratio: 9.999294e-02	ci left: 2.832695e-02	ci right 3.132797e-02	k: 1490	n:50000
KS ci ratio: 7.122678e-03	ci left: 8.552326e-01	ci right 8.613658e-01	k: 42916	n:50000
FAM55A   50000 perm   10 sec   (5240 perm/sec)   p_kst 8.583200e-01   p_cons 2.980000e-02   p_joint 3.522000e-02

Outputting figure to mutsig2_images.part000000000062/FAM55A.2_1234_50000_0.85832_0.0298_0.03522.png
                gene_name: FAM55A
               theta_stop: 0.100 
                    nperm: 50000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.030 
      ci_cons_bounds_left: 0.028 
     ci_cons_bounds_right: 0.031 
                  p_joint: 0.035 
     ci_joint_bounds_left: 0.034 
    ci_joint_bounds_right: 0.037 

Current progress: 68 percent done.
FAM57B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.625207e-02	ci left: 2.506326e-01	ci right 2.679078e-01	k: 2592	n:10000
Cons ci ratio: 1.824899e-02	ci left: 8.142578e-01	ci right 8.293542e-01	k: 8219	n:10000
KS ci ratio: 1.289403e-01	ci left: 7.912021e-02	ci right 9.012318e-02	k: 845	n:10000
FAM57B   10000 perm   1 sec   (6994 perm/sec)   p_kst 8.450000e-02   p_cons 8.219000e-01   p_joint 2.592000e-01

Joint ci ratio: 3.608044e-02	ci left: 3.643988e-01	ci right 3.778386e-01	k: 7422	n:20000
Cons ci ratio: 1.286606e-02	ci left: 8.173857e-01	ci right 8.280203e-01	k: 16455	n:20000
KS ci ratio: 8.792318e-02	ci left: 8.641161e-02	ci right 9.440794e-02	k: 1807	n:20000
FAM57B   20000 perm   3 sec   (6170 perm/sec)   p_kst 9.035000e-02   p_cons 8.227500e-01   p_joint 3.711000e-01

Outputting figure to mutsig2_images.part000000000062/FAM57B.2_845_20000_0.09035_0.82275_0.3711.png
                gene_name: FAM57B
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.090 
        ci_ks_bounds_left: 0.086 
       ci_ks_bounds_right: 0.094 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 70 percent done.
FAM65B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.427694e-02	ci left: 3.333947e-01	ci right 3.520970e-01	k: 3427	n:10000
Cons ci ratio: 4.993416e-02	ci left: 3.716666e-01	ci right 3.908027e-01	k: 3812	n:10000
KS ci ratio: 6.172504e-02	ci left: 2.784441e-01	ci right 2.962799e-01	k: 2873	n:10000
FAM65B   10000 perm   2 sec   (5710 perm/sec)   p_kst 2.873000e-01   p_cons 3.812000e-01   p_joint 3.427000e-01

Outputting figure to mutsig2_images.part000000000062/FAM65B.2_3305_10000_0.2873_0.3812_0.3427.png
                gene_name: FAM65B
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 73 percent done.
FAM71C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.752138e-02	ci left: 6.604841e-01	ci right 6.790169e-01	k: 6698	n:10000
Cons ci ratio: 3.118942e-02	ci left: 6.026690e-01	ci right 6.218656e-01	k: 6123	n:10000
KS ci ratio: 8.760919e-02	ci left: 1.594429e-01	ci right 1.741517e-01	k: 1667	n:10000
FAM71C   10000 perm   1 sec   (6720 perm/sec)   p_kst 1.667000e-01   p_cons 6.123000e-01   p_joint 6.698000e-01

Outputting figure to mutsig2_images.part000000000062/FAM71C.2_734_10000_0.1667_0.6123_0.6698.png
                gene_name: FAM71C
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 76 percent done.
FAM71F2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.593554e-02	ci left: 5.334756e-01	ci right 5.530992e-01	k: 5433	n:10000
Cons ci ratio: 2.754004e-02	ci left: 6.601821e-01	ci right 6.787191e-01	k: 6695	n:10000
KS ci ratio: 4.591556e-02	ci left: 4.117958e-01	ci right 4.312500e-01	k: 4215	n:10000
FAM71F2   10000 perm   1 sec   (6773 perm/sec)   p_kst 4.215000e-01   p_cons 6.695000e-01   p_joint 5.433000e-01

Outputting figure to mutsig2_images.part000000000062/FAM71F2.2_950_10000_0.4215_0.6695_0.5433.png
                gene_name: FAM71F2
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 78 percent done.
FAM81A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.839522e-01	ci left: 1.604286e-02	ci right 2.144267e-02	k: 186	n:10000
Cons ci ratio: 1.086875e-01	ci left: 1.088101e-01	ci right 1.214151e-01	k: 1150	n:10000
KS ci ratio: 2.473410e-01	ci left: 2.146516e-02	ci right 2.761609e-02	k: 244	n:10000
FAM81A   10000 perm   1 sec   (6815 perm/sec)   p_kst 2.440000e-02   p_cons 1.150000e-01   p_joint 1.860000e-02

Joint ci ratio: 1.434327e-01	ci left: 3.341257e-02	ci right 3.862344e-02	k: 719	n:20000
Cons ci ratio: 8.744546e-02	ci left: 8.729371e-02	ci right 9.532556e-02	k: 1825	n:20000
KS ci ratio: 1.767584e-01	ci left: 2.187547e-02	ci right 2.616445e-02	k: 479	n:20000
FAM81A   20000 perm   3 sec   (6016 perm/sec)   p_kst 2.395000e-02   p_cons 9.125000e-02   p_joint 3.595000e-02

Joint ci ratio: 1.920271e-01	ci left: 1.238345e-02	ci right 1.504528e-02	k: 410	n:30000
Cons ci ratio: 7.190611e-02	ci left: 8.688312e-02	ci right 9.339650e-02	k: 2703	n:30000
KS ci ratio: 1.450478e-01	ci left: 2.204044e-02	ci right 2.551929e-02	k: 712	n:30000
FAM81A   30000 perm   5 sec   (5722 perm/sec)   p_kst 2.373333e-02   p_cons 9.010000e-02   p_joint 1.366667e-02

Joint ci ratio: 1.684968e-01	ci left: 1.222427e-02	ci right 1.449719e-02	k: 533	n:40000
Cons ci ratio: 6.178736e-02	ci left: 8.859315e-02	ci right 9.426633e-02	k: 3656	n:40000
KS ci ratio: 1.265505e-01	ci left: 2.194073e-02	ci right 2.492900e-02	k: 936	n:40000
FAM81A   40000 perm   7 sec   (5528 perm/sec)   p_kst 2.340000e-02   p_cons 9.140000e-02   p_joint 1.332500e-02

Joint ci ratio: 8.746584e-02	ci left: 3.692830e-02	ci right 4.032553e-02	k: 1930	n:50000
Cons ci ratio: 5.520627e-02	ci left: 8.906559e-02	ci right 9.414194e-02	k: 4579	n:50000
KS ci ratio: 1.147166e-01	ci left: 2.150942e-02	ci right 2.414639e-02	k: 1140	n:50000
FAM81A   50000 perm   9 sec   (5377 perm/sec)   p_kst 2.280000e-02   p_cons 9.158000e-02   p_joint 3.860000e-02

Joint ci ratio: 3.502421e-02	ci left: 1.696831e-01	ci right 1.757486e-01	k: 10362	n:60000
Cons ci ratio: 4.335065e-02	ci left: 1.173274e-01	ci right 1.225428e-01	k: 7195	n:60000
KS ci ratio: 1.048864e-01	ci left: 2.155548e-02	ci right 2.395765e-02	k: 1364	n:60000
FAM81A   60000 perm   11 sec   (5232 perm/sec)   p_kst 2.273333e-02   p_cons 1.199167e-01   p_joint 1.727000e-01

Joint ci ratio: 3.351444e-02	ci left: 1.607388e-01	ci right 1.662319e-01	k: 11443	n:70000
Cons ci ratio: 4.030240e-02	ci left: 1.166526e-01	ci right 1.214648e-01	k: 8333	n:70000
KS ci ratio: 9.791120e-02	ci left: 2.128857e-02	ci right 2.349413e-02	k: 1566	n:70000
FAM81A   70000 perm   14 sec   (5110 perm/sec)   p_kst 2.237143e-02   p_cons 1.190429e-01   p_joint 1.634714e-01

Outputting figure to mutsig2_images.part000000000062/FAM81A.2_1139_70000_0.022371_0.11904_0.16347.png
                gene_name: FAM81A
               theta_stop: 0.098 
                    nperm: 70000 
                     p_ks: 0.022 
        ci_ks_bounds_left: 0.021 
       ci_ks_bounds_right: 0.023 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 81 percent done.
FAM83E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.214905e-02	ci left: 7.494812e-01	ci right 7.663683e-01	k: 7580	n:10000
Cons ci ratio: 1.920806e-02	ci left: 7.985170e-01	ci right 8.141041e-01	k: 8064	n:10000
KS ci ratio: 4.975474e-02	ci left: 3.733580e-01	ci right 3.925103e-01	k: 3829	n:10000
FAM83E   10000 perm   2 sec   (6468 perm/sec)   p_kst 3.829000e-01   p_cons 8.064000e-01   p_joint 7.580000e-01

Outputting figure to mutsig2_images.part000000000062/FAM83E.2_1457_10000_0.3829_0.8064_0.758.png
                gene_name: FAM83E
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 84 percent done.
FAM83H
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.045260e-02	ci left: 4.743609e-01	ci right 4.940483e-01	k: 4842	n:10000
Cons ci ratio: 5.567918e-02	ci left: 3.220751e-01	ci right 3.406233e-01	k: 3313	n:10000
KS ci ratio: 5.703829e-02	ci left: 3.115552e-01	ci right 3.299493e-01	k: 3207	n:10000
FAM83H   10000 perm   2 sec   (5736 perm/sec)   p_kst 3.207000e-01   p_cons 3.313000e-01   p_joint 4.842000e-01

Outputting figure to mutsig2_images.part000000000062/FAM83H.2_3556_10000_0.3207_0.3313_0.4842.png
                gene_name: FAM83H
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 86 percent done.
FAM84A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.975980e-02	ci left: 7.893861e-01	ci right 8.052403e-01	k: 7974	n:10000
Cons ci ratio: 3.687980e-02	ci left: 5.205606e-01	ci right 5.402216e-01	k: 5304	n:10000
KS ci ratio: 3.248534e-02	ci left: 5.830946e-01	ci right 6.024514e-01	k: 5928	n:10000
FAM84A   10000 perm   1 sec   (6789 perm/sec)   p_kst 5.928000e-01   p_cons 5.304000e-01   p_joint 7.974000e-01

Outputting figure to mutsig2_images.part000000000062/FAM84A.2_883_10000_0.5928_0.5304_0.7974.png
                gene_name: FAM84A
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 89 percent done.
FAM8A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.757116e-02	ci left: 6.596787e-01	ci right 6.782228e-01	k: 6690	n:10000
Cons ci ratio: 1.532928e-02	ci left: 8.605959e-01	ci right 8.739894e-01	k: 8674	n:10000
KS ci ratio: 6.169492e-02	ci left: 2.786422e-01	ci right 2.964817e-01	k: 2875	n:10000
FAM8A1   10000 perm   2 sec   (6666 perm/sec)   p_kst 2.875000e-01   p_cons 8.674000e-01   p_joint 6.690000e-01

Outputting figure to mutsig2_images.part000000000062/FAM8A1.2_1262_10000_0.2875_0.8674_0.669.png
                gene_name: FAM8A1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 92 percent done.
FAM90A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.230335e-03	ci left: 9.798420e-01	ci right 9.850715e-01	k: 9826	n:10000
KS ci ratio: 1.219629e-02	ci left: 9.060712e-01	ci right 9.172877e-01	k: 9118	n:10000
FAM90A1   10000 perm   2 sec   (6596 perm/sec)   p_kst 9.118000e-01   p_cons 9.826000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000062/FAM90A1.2_1411_10000_0.9118_0.9826_1.png
                gene_name: FAM90A1
               theta_stop: 0.012 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
FANCC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.508989e-03	ci left: 9.398315e-01	ci right 9.489074e-01	k: 9445	n:10000
Cons ci ratio: 2.327743e-02	ci left: 7.305765e-01	ci right 7.478839e-01	k: 7393	n:10000
KS ci ratio: 1.749028e-02	ci left: 8.265603e-01	ci right 8.412446e-01	k: 8340	n:10000
FANCC   10000 perm   2 sec   (6437 perm/sec)   p_kst 8.340000e-01   p_cons 7.393000e-01   p_joint 9.445000e-01

Outputting figure to mutsig2_images.part000000000062/FANCC.2_1733_10000_0.834_0.7393_0.9445.png
                gene_name: FANCC
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 97 percent done.
FANCG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.004954e-02	ci left: 9.335086e-01	ci right 9.430341e-01	k: 9384	n:10000
Cons ci ratio: 1.930025e-02	ci left: 7.969948e-01	ci right 8.126273e-01	k: 8049	n:10000
KS ci ratio: 2.464460e-02	ci left: 7.077562e-01	ci right 7.255175e-01	k: 7167	n:10000
FANCG   10000 perm   2 sec   (6547 perm/sec)   p_kst 7.167000e-01   p_cons 8.049000e-01   p_joint 9.384000e-01

Outputting figure to mutsig2_images.part000000000062/FANCG.2_1925_10000_0.7167_0.8049_0.9384.png
                gene_name: FANCG
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000062
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 62 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1705>
Subject: Job 8004071: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1705>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000063> was used as the working directory.
Started at Sun Nov 11 15:05:53 2012
Results reported at Sun Nov 11 15:15:36 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000063.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000063.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 63  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000063.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    620.83 sec.
    Max Memory :      4648 MB
    Max Swap   :      7160 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
63
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 63
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 63: processing genes 5610 - 5700
Calculating significance of each gene.
Using projection method.
5610	FAP	1
5611	FAR1	8.234983e-01
5612	FAR2	1
5613	FARP1	9.039923e-01
5614	FARP2	8.925965e-01
5615	FARS2	6.311011e-01
5616	FARSA	4.964067e-02
5617	FARSB	1
5618	FAS	7.885577e-01
5619	FASLG	7.435932e-01
5620	FASN	1
5621	FASTK	1
5622	FASTKD1	3.955004e-01
5623	FASTKD2	1
5624	FASTKD3	1.556113e-01
5625	FASTKD5	1
5626	FAT1	8.786943e-01
5627	FAT2	9.999395e-01
5628	FAT3	1
5629	FAT4	1
5630	FATE1	1.258169e-01
5631	FAU	1
5632	FBF1	1
5633	FBL	2.474801e-01
5634	FBLIM1	8.189992e-01
5635	FBLN1	1
5636	FBLN2	6.129302e-01
5637	FBLN5	7.066158e-01
5638	FBLN7	1
5639	FBN1	9.999915e-01
5640	FBN2	9.971286e-01
5641	FBN3	9.987779e-01
5642	FBP1	1
5643	FBP2	6.129547e-01
5644	FBRS	1
5645	FBXL12	1
5646	FBXL13	1
5647	FBXL14	1
5648	FBXL15	1
5649	FBXL16	3.601834e-01
5650	FBXL17	4.994979e-01
5651	FBXL18	6.129858e-01
5652	FBXL19	3.783739e-01
5653	FBXL2	7.170272e-01
5654	FBXL20	8.604018e-02
5655	FBXL21	1
5656	FBXL22	4.679982e-01
5657	FBXL3	1
5658	FBXL4	9.254968e-01
5659	FBXL5	8.901565e-01
5660	FBXL6	8.849915e-01
5661	FBXL7	1.439150e-01
5662	FBXL8	1
5663	FBXO10	1
5664	FBXO11	1.812627e-01
5665	FBXO15	1.312890e-01
5666	FBXO16	1
5667	FBXO17	3.042617e-01
5668	FBXO18	9.432236e-01
5669	FBXO2	3.281695e-01
5670	FBXO21	1
5671	FBXO22	7.674078e-03
5672	FBXO24	1
5673	FBXO25	8.011649e-01
5674	FBXO27	2.399093e-01
5675	FBXO28	5.464868e-01
5676	FBXO3	8.643816e-01
5677	FBXO30	3.826442e-01
5678	FBXO31	2.392244e-01
5679	FBXO32	1
5680	FBXO33	6.187337e-01
5681	FBXO34	8.940888e-01
5682	FBXO36	1
5683	FBXO38	9.962711e-01
5684	FBXO39	1
5685	FBXO4	6.429433e-03
5686	FBXO40	9.393280e-01
5687	FBXO41	5.310037e-01
5688	FBXO42	1
5689	FBXO43	2.347233e-02
5690	FBXO44	6.459330e-01
5691	FBXO45	4.456757e-01
5692	FBXO46	6.313367e-01
5693	FBXO47	1.508816e-01
5694	FBXO48	1
5695	FBXO5	6.461502e-01
5696	FBXO6	1
5697	FBXO7	6.564809e-01
5698	FBXO8	5.946116e-01
5699	FBXO9	7.310957e-01
5700	FBXW10	3.297117e-01
Done

Running MutSig 2:
Scatter job 63: processing genes 5610 - 5700
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
FAT3
Processing conservation and coverage...
72% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.810422e-02	ci left: 5.042512e-01	ci right 5.239406e-01	k: 5141	n:10000
Cons ci ratio: 3.717692e-02	ci left: 5.165574e-01	ci right 5.362273e-01	k: 5264	n:10000
KS ci ratio: 5.989282e-02	ci left: 2.908294e-01	ci right 3.088873e-01	k: 2998	n:10000
FAT3   10000 perm   4 sec   (2401 perm/sec)   p_kst 2.998000e-01   p_cons 5.264000e-01   p_joint 5.141000e-01

Outputting figure to mutsig2_images.part000000000063/FAT3.33_13774_10000_0.2998_0.5264_0.5141.png
                gene_name: FAT3
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 2 percent done.
FAT4
Processing conservation and coverage...
66% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.319292e-02	ci left: 7.319911e-01	ci right 7.492685e-01	k: 7407	n:10000
Cons ci ratio: 5.848272e-02	ci left: 3.008425e-01	ci right 3.190683e-01	k: 3099	n:10000
KS ci ratio: 1.168940e-02	ci left: 9.128618e-01	ci right 9.236931e-01	k: 9184	n:10000
FAT4   10000 perm   4 sec   (2775 perm/sec)   p_kst 9.184000e-01   p_cons 3.099000e-01   p_joint 7.407000e-01

Outputting figure to mutsig2_images.part000000000063/FAT4.26_15014_10000_0.9184_0.3099_0.7407.png
                gene_name: FAT4
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 5 percent done.
FAT1
Processing conservation and coverage...
72% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.532304e-01	ci left: 2.043278e-02	ci right 2.644926e-02	k: 233	n:10000
Cons ci ratio: 1.492718e-02	ci left: 8.667238e-01	ci right 8.798579e-01	k: 8734	n:10000
KS ci ratio: 4.772737e-01	ci left: 5.108009e-03	ci right 8.389267e-03	k: 66	n:10000
FAT1   10000 perm   4 sec   (2681 perm/sec)   p_kst 6.600000e-03   p_cons 8.734000e-01   p_joint 2.330000e-02

Joint ci ratio: 1.854546e-01	ci left: 1.982091e-02	ci right 2.391974e-02	k: 436	n:20000
Cons ci ratio: 1.044890e-02	ci left: 8.709463e-01	ci right 8.801442e-01	k: 17512	n:20000
KS ci ratio: 3.199326e-01	ci left: 6.259271e-03	ci right 8.687225e-03	k: 148	n:20000
FAT1   20000 perm   8 sec   (2519 perm/sec)   p_kst 7.400000e-03   p_cons 8.756000e-01   p_joint 2.180000e-02

Joint ci ratio: 1.470676e-01	ci left: 2.142975e-02	ci right 2.486345e-02	k: 693	n:30000
Cons ci ratio: 8.503788e-03	ci left: 8.725212e-01	ci right 8.800057e-01	k: 26289	n:30000
KS ci ratio: 2.603472e-01	ci left: 6.523791e-03	ci right 8.506710e-03	k: 224	n:30000
FAT1   30000 perm   12 sec   (2457 perm/sec)   p_kst 7.466667e-03   p_cons 8.763000e-01   p_joint 2.310000e-02

Joint ci ratio: 1.464329e-01	ci left: 1.630991e-02	ci right 1.891080e-02	k: 703	n:40000
Cons ci ratio: 7.322711e-03	ci left: 8.742724e-01	ci right 8.807227e-01	k: 35101	n:40000
KS ci ratio: 2.250905e-01	ci left: 6.677907e-03	ci right 8.394749e-03	k: 300	n:40000
FAT1   40000 perm   17 sec   (2416 perm/sec)   p_kst 7.500000e-03   p_cons 8.775250e-01   p_joint 1.757500e-02

Joint ci ratio: 1.183781e-01	ci left: 2.018823e-02	ci right 2.274774e-02	k: 1072	n:50000
Cons ci ratio: 6.530206e-03	ci left: 8.752609e-01	ci right 8.810151e-01	k: 43908	n:50000
KS ci ratio: 2.013950e-01	ci left: 6.762465e-03	ci right 8.295544e-03	k: 375	n:50000
FAT1   50000 perm   21 sec   (2378 perm/sec)   p_kst 7.500000e-03   p_cons 8.781600e-01   p_joint 2.144000e-02

Joint ci ratio: 1.199097e-01	ci left: 1.644968e-02	ci right 1.856403e-02	k: 1049	n:60000
Cons ci ratio: 5.925207e-03	ci left: 8.768180e-01	ci right 8.820453e-01	k: 52767	n:60000
KS ci ratio: 1.877007e-01	ci left: 6.539087e-03	ci right 7.909228e-03	k: 432	n:60000
FAT1   60000 perm   26 sec   (2341 perm/sec)   p_kst 7.200000e-03   p_cons 8.794500e-01   p_joint 1.748333e-02

Joint ci ratio: 9.541817e-02	ci left: 2.241835e-02	ci right 2.467853e-02	k: 1647	n:70000
Cons ci ratio: 5.481767e-03	ci left: 8.771663e-01	ci right 8.820021e-01	k: 61572	n:70000
KS ci ratio: 1.759239e-01	ci left: 6.423060e-03	ci right 7.675468e-03	k: 492	n:70000
FAT1   70000 perm   30 sec   (2318 perm/sec)   p_kst 7.028571e-03   p_cons 8.796000e-01   p_joint 2.352857e-02

Joint ci ratio: 1.035069e-01	ci left: 1.670010e-02	ci right 1.853512e-02	k: 1408	n:80000
Cons ci ratio: 5.137685e-03	ci left: 8.769091e-01	ci right 8.814384e-01	k: 70335	n:80000
KS ci ratio: 1.661172e-01	ci left: 6.338070e-03	ci right 7.498122e-03	k: 552	n:80000
FAT1   80000 perm   35 sec   (2298 perm/sec)   p_kst 6.900000e-03   p_cons 8.791875e-01   p_joint 1.760000e-02

Joint ci ratio: 1.079747e-01	ci left: 1.365343e-02	ci right 1.522253e-02	k: 1298	n:90000
Cons ci ratio: 5.171979e-03	ci left: 8.623026e-01	ci right 8.667850e-01	k: 77810	n:90000
KS ci ratio: 1.572705e-01	ci left: 6.316185e-03	ci right 7.404854e-03	k: 616	n:90000
FAT1   90000 perm   40 sec   (2277 perm/sec)   p_kst 6.844444e-03   p_cons 8.645556e-01   p_joint 1.442222e-02

Joint ci ratio: 9.395317e-02	ci left: 1.630550e-02	ci right 1.792268e-02	k: 1710	n:100000
Cons ci ratio: 4.949955e-03	ci left: 8.603299e-01	ci right 8.646090e-01	k: 86248	n:100000
KS ci ratio: 1.482832e-01	ci left: 6.425175e-03	ci right 7.463733e-03	k: 693	n:100000
FAT1   100000 perm   45 sec   (2239 perm/sec)   p_kst 6.930000e-03   p_cons 8.624800e-01   p_joint 1.710000e-02

Joint ci ratio: 9.661242e-02	ci left: 1.403256e-02	ci right 1.546592e-02	k: 1621	n:110000
Cons ci ratio: 4.710145e-03	ci left: 8.609082e-01	ci right 8.649818e-01	k: 94925	n:110000
KS ci ratio: 1.402219e-01	ci left: 6.559664e-03	ci right 7.557501e-03	k: 775	n:110000
FAT1   110000 perm   50 sec   (2218 perm/sec)   p_kst 7.045455e-03   p_cons 8.629545e-01   p_joint 1.473636e-02

Joint ci ratio: 8.850847e-02	ci left: 1.537098e-02	ci right 1.680254e-02	k: 1929	n:120000
Cons ci ratio: 4.504458e-03	ci left: 8.612679e-01	ci right 8.651645e-01	k: 103587	n:120000
KS ci ratio: 1.338188e-01	ci left: 6.624669e-03	ci right 7.582716e-03	k: 851	n:120000
FAT1   120000 perm   55 sec   (2199 perm/sec)   p_kst 7.091667e-03   p_cons 8.632250e-01   p_joint 1.607500e-02

Joint ci ratio: 9.389188e-02	ci left: 1.260916e-02	ci right 1.385884e-02	k: 1719	n:130000
Cons ci ratio: 4.328197e-03	ci left: 8.613201e-01	ci right 8.650637e-01	k: 112216	n:130000
KS ci ratio: 1.337767e-01	ci left: 6.122407e-03	ci right 7.007512e-03	k: 852	n:130000
FAT1   130000 perm   60 sec   (2178 perm/sec)   p_kst 6.553846e-03   p_cons 8.632000e-01   p_joint 1.322308e-02

Joint ci ratio: 8.713578e-02	ci left: 1.362868e-02	ci right 1.487727e-02	k: 1994	n:140000
Cons ci ratio: 4.174787e-03	ci left: 8.611590e-01	ci right 8.647688e-01	k: 120816	n:140000
KS ci ratio: 1.290956e-01	ci left: 6.120297e-03	ci right 6.971763e-03	k: 915	n:140000
FAT1   140000 perm   65 sec   (2159 perm/sec)   p_kst 6.535714e-03   p_cons 8.629714e-01   p_joint 1.424286e-02

Joint ci ratio: 8.630507e-02	ci left: 1.298080e-02	ci right 1.415812e-02	k: 2034	n:150000
Cons ci ratio: 4.028757e-03	ci left: 8.614842e-01	ci right 8.649685e-01	k: 129485	n:150000
KS ci ratio: 1.227463e-01	ci left: 6.338626e-03	ci right 7.173944e-03	k: 1012	n:150000
FAT1   150000 perm   70 sec   (2141 perm/sec)   p_kst 6.746667e-03   p_cons 8.632333e-01   p_joint 1.356000e-02

Joint ci ratio: 8.011160e-02	ci left: 1.415274e-02	ci right 1.533994e-02	k: 2358	n:160000
Cons ci ratio: 3.900239e-03	ci left: 8.615756e-01	ci right 8.649487e-01	k: 138123	n:160000
KS ci ratio: 1.183826e-01	ci left: 6.403152e-03	ci right 7.214875e-03	k: 1088	n:160000
FAT1   160000 perm   75 sec   (2123 perm/sec)   p_kst 6.800000e-03   p_cons 8.632688e-01   p_joint 1.473750e-02

Joint ci ratio: 8.116472e-02	ci left: 1.298561e-02	ci right 1.408990e-02	k: 2300	n:170000
Cons ci ratio: 3.792708e-03	ci left: 8.610667e-01	ci right 8.643445e-01	k: 146661	n:170000
KS ci ratio: 1.151018e-01	ci left: 6.386259e-03	ci right 7.171879e-03	k: 1151	n:170000
FAT1   170000 perm   81 sec   (2107 perm/sec)   p_kst 6.770588e-03   p_cons 8.627118e-01   p_joint 1.352941e-02

Joint ci ratio: 6.869941e-02	ci left: 1.715593e-02	ci right 1.838189e-02	k: 3197	n:180000
Cons ci ratio: 3.685166e-03	ci left: 8.611573e-01	ci right 8.643421e-01	k: 155296	n:180000
KS ci ratio: 1.114806e-01	ci left: 6.441736e-03	ci right 7.207611e-03	k: 1227	n:180000
FAT1   180000 perm   86 sec   (2093 perm/sec)   p_kst 6.816667e-03   p_cons 8.627556e-01   p_joint 1.776111e-02

Joint ci ratio: 6.918458e-02	ci left: 1.604060e-02	ci right 1.719527e-02	k: 3156	n:190000
Cons ci ratio: 3.591781e-03	ci left: 8.608746e-01	ci right 8.639775e-01	k: 163862	n:190000
KS ci ratio: 1.079727e-01	ci left: 6.517328e-03	ci right 7.266257e-03	k: 1308	n:190000
FAT1   190000 perm   91 sec   (2079 perm/sec)   p_kst 6.884211e-03   p_cons 8.624316e-01   p_joint 1.661053e-02

Joint ci ratio: 6.733147e-02	ci left: 1.610357e-02	ci right 1.723051e-02	k: 3332	n:200000
Cons ci ratio: 3.501078e-03	ci left: 8.608976e-01	ci right 8.639219e-01	k: 172483	n:200000
KS ci ratio: 1.050048e-01	ci left: 6.556481e-03	ci right 7.287920e-03	k: 1383	n:200000
FAT1   200000 perm   97 sec   (2064 perm/sec)   p_kst 6.915000e-03   p_cons 8.624150e-01   p_joint 1.666000e-02

Joint ci ratio: 6.687102e-02	ci left: 1.556132e-02	ci right 1.664257e-02	k: 3380	n:210000
Cons ci ratio: 3.417946e-03	ci left: 8.608475e-01	ci right 8.637996e-01	k: 181089	n:210000
KS ci ratio: 1.023749e-01	ci left: 6.578237e-03	ci right 7.292618e-03	k: 1455	n:210000
FAT1   210000 perm   102 sec   (2049 perm/sec)   p_kst 6.928571e-03   p_cons 8.623286e-01   p_joint 1.609524e-02

Joint ci ratio: 6.119667e-02	ci left: 1.774848e-02	ci right 1.887336e-02	k: 4027	n:220000
Cons ci ratio: 3.341169e-03	ci left: 8.607526e-01	ci right 8.636378e-01	k: 189684	n:220000
KS ci ratio: 1.000983e-01	ci left: 6.576060e-03	ci right 7.273390e-03	k: 1522	n:220000
FAT1   220000 perm   108 sec   (2035 perm/sec)   p_kst 6.918182e-03   p_cons 8.622000e-01   p_joint 1.830455e-02

Joint ci ratio: 6.015116e-02	ci left: 1.758478e-02	ci right 1.867958e-02	k: 4169	n:230000
Cons ci ratio: 3.269699e-03	ci left: 8.606405e-01	ci right 8.634634e-01	k: 198273	n:230000
KS ci ratio: 9.846721e-02	ci left: 6.506366e-03	ci right 7.184413e-03	k: 1573	n:230000
FAT1   230000 perm   114 sec   (2020 perm/sec)   p_kst 6.839130e-03   p_cons 8.620565e-01   p_joint 1.812609e-02

Outputting figure to mutsig2_images.part000000000063/FAT1.24_13871_230000_0.0068391_0.86206_0.018126.png
                gene_name: FAT1
               theta_stop: 0.098 
                    nperm: 230000 
                     p_ks: 0.0068 
        ci_ks_bounds_left: 0.0065 
       ci_ks_bounds_right: 0.0072 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.018 
     ci_joint_bounds_left: 0.018 
    ci_joint_bounds_right: 0.019 

Current progress: 7 percent done.
FBN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.217497e-01	ci left: 2.693317e-02	ci right 3.374407e-02	k: 302	n:10000
Cons ci ratio: 4.493169e-02	ci left: 4.223619e-01	ci right 4.418776e-01	k: 4321	n:10000
KS ci ratio: 3.350785e-01	ci left: 1.123901e-02	ci right 1.585081e-02	k: 134	n:10000
FBN2   10000 perm   3 sec   (3132 perm/sec)   p_kst 1.340000e-02   p_cons 4.321000e-01   p_joint 3.020000e-02

Joint ci ratio: 1.549680e-01	ci left: 2.859324e-02	ci right 3.344437e-02	k: 619	n:20000
Cons ci ratio: 3.013582e-02	ci left: 4.513262e-01	ci right 4.651860e-01	k: 9165	n:20000
KS ci ratio: 2.520380e-01	ci left: 1.044346e-02	ci right 1.350089e-02	k: 238	n:20000
FBN2   20000 perm   7 sec   (2919 perm/sec)   p_kst 1.190000e-02   p_cons 4.582500e-01   p_joint 3.095000e-02

Joint ci ratio: 1.130492e-01	ci left: 3.635095e-02	ci right 4.073899e-02	k: 1155	n:30000
Cons ci ratio: 2.528042e-02	ci left: 4.392321e-01	ci right 4.505119e-01	k: 13346	n:30000
KS ci ratio: 1.974559e-01	ci left: 1.168546e-02	ci right 1.427680e-02	k: 388	n:30000
FBN2   30000 perm   11 sec   (2852 perm/sec)   p_kst 1.293333e-02   p_cons 4.448667e-01   p_joint 3.850000e-02

Joint ci ratio: 8.956442e-02	ci left: 4.364954e-02	ci right 4.776673e-02	k: 1827	n:40000
Cons ci ratio: 2.232635e-02	ci left: 4.303587e-01	ci right 4.401007e-01	k: 17409	n:40000
KS ci ratio: 1.706141e-01	ci left: 1.191290e-02	ci right 1.415862e-02	k: 520	n:40000
FBN2   40000 perm   14 sec   (2804 perm/sec)   p_kst 1.300000e-02   p_cons 4.352250e-01   p_joint 4.567500e-02

Joint ci ratio: 1.067091e-01	ci left: 2.487593e-02	ci right 2.769943e-02	k: 1313	n:50000
Cons ci ratio: 1.870998e-02	ci left: 4.630987e-01	ci right 4.718651e-01	k: 23374	n:50000
KS ci ratio: 1.506513e-01	ci left: 1.235273e-02	ci right 1.438435e-02	k: 667	n:50000
FBN2   50000 perm   18 sec   (2764 perm/sec)   p_kst 1.334000e-02   p_cons 4.674800e-01   p_joint 2.626000e-02

Joint ci ratio: 9.173628e-02	ci left: 2.817687e-02	ci right 3.090222e-02	k: 1771	n:60000
Cons ci ratio: 1.701816e-02	ci left: 4.652834e-01	ci right 4.732863e-01	k: 28157	n:60000
KS ci ratio: 1.399886e-01	ci left: 1.199628e-02	ci right 1.381796e-02	k: 773	n:60000
FBN2   60000 perm   22 sec   (2729 perm/sec)   p_kst 1.288333e-02   p_cons 4.692833e-01   p_joint 2.951667e-02

Joint ci ratio: 8.743255e-02	ci left: 2.669247e-02	ci right 2.914688e-02	k: 1953	n:70000
Cons ci ratio: 1.576478e-02	ci left: 4.652973e-01	ci right 4.727052e-01	k: 32830	n:70000
KS ci ratio: 1.299694e-01	ci left: 1.199419e-02	ci right 1.367512e-02	k: 897	n:70000
FBN2   70000 perm   26 sec   (2695 perm/sec)   p_kst 1.281429e-02   p_cons 4.690000e-01   p_joint 2.790000e-02

Joint ci ratio: 7.985919e-02	ci left: 2.806866e-02	ci right 3.041564e-02	k: 2338	n:80000
Cons ci ratio: 1.524878e-02	ci left: 4.489090e-01	ci right 4.558194e-01	k: 36189	n:80000
KS ci ratio: 1.224415e-01	ci left: 1.187491e-02	ci right 1.343573e-02	k: 1011	n:80000
FBN2   80000 perm   30 sec   (2664 perm/sec)   p_kst 1.263750e-02   p_cons 4.523625e-01   p_joint 2.922500e-02

Joint ci ratio: 7.480112e-02	ci left: 2.850237e-02	ci right 3.072809e-02	k: 2664	n:90000
Cons ci ratio: 1.437789e-02	ci left: 4.490665e-01	ci right 4.555810e-01	k: 40709	n:90000
KS ci ratio: 1.095690e-01	ci left: 1.325336e-02	ci right 1.480042e-02	k: 1261	n:90000
FBN2   90000 perm   34 sec   (2636 perm/sec)   p_kst 1.401111e-02   p_cons 4.523222e-01   p_joint 2.960000e-02

Joint ci ratio: 6.942072e-02	ci left: 2.982626e-02	ci right 3.198107e-02	k: 3089	n:100000
Cons ci ratio: 1.364125e-02	ci left: 4.491916e-01	ci right 4.553712e-01	k: 45228	n:100000
KS ci ratio: 1.093402e-01	ci left: 1.199568e-02	ci right 1.339280e-02	k: 1268	n:100000
FBN2   100000 perm   38 sec   (2609 perm/sec)   p_kst 1.268000e-02   p_cons 4.522800e-01   p_joint 3.089000e-02

Joint ci ratio: 6.479668e-02	ci left: 3.115564e-02	ci right 3.325094e-02	k: 3541	n:110000
Cons ci ratio: 1.298756e-02	ci left: 4.500551e-01	ci right 4.559474e-01	k: 49830	n:110000
KS ci ratio: 1.041348e-01	ci left: 1.205546e-02	ci right 1.338860e-02	k: 1398	n:110000
FBN2   110000 perm   43 sec   (2583 perm/sec)   p_kst 1.270909e-02   p_cons 4.530000e-01   p_joint 3.219091e-02

Joint ci ratio: 6.183174e-02	ci left: 3.140535e-02	ci right 3.341733e-02	k: 3888	n:120000
Cons ci ratio: 1.243759e-02	ci left: 4.500640e-01	ci right 4.557050e-01	k: 54346	n:120000
KS ci ratio: 9.944383e-02	ci left: 1.214723e-02	ci right 1.342648e-02	k: 1533	n:120000
FBN2   120000 perm   47 sec   (2558 perm/sec)   p_kst 1.277500e-02   p_cons 4.528833e-01   p_joint 3.240000e-02

Outputting figure to mutsig2_images.part000000000063/FBN2.22_8999_120000_0.012775_0.45288_0.0324.png
                gene_name: FBN2
               theta_stop: 0.099 
                    nperm: 120000 
                     p_ks: 0.013 
        ci_ks_bounds_left: 0.012 
       ci_ks_bounds_right: 0.013 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.032 
     ci_joint_bounds_left: 0.031 
    ci_joint_bounds_right: 0.033 

Current progress: 10 percent done.
FBN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.338560e-02	ci left: 3.408451e-01	ci right 3.596422e-01	k: 3502	n:10000
Cons ci ratio: 9.187825e-03	ci left: 9.434661e-01	ci right 9.522706e-01	k: 9480	n:10000
KS ci ratio: 1.166900e-01	ci left: 9.545302e-02	ci right 1.073803e-01	k: 1013	n:10000
FBN3   10000 perm   3 sec   (3610 perm/sec)   p_kst 1.013000e-01   p_cons 9.480000e-01   p_joint 3.502000e-01

Joint ci ratio: 5.213105e-02	ci left: 2.146216e-01	ci right 2.261598e-01	k: 4407	n:20000
Cons ci ratio: 6.631376e-03	ci left: 9.426745e-01	ci right 9.489951e-01	k: 18918	n:20000
KS ci ratio: 7.988696e-02	ci left: 1.031412e-01	ci right 1.117733e-01	k: 2148	n:20000
FBN3   20000 perm   6 sec   (3335 perm/sec)   p_kst 1.074000e-01   p_cons 9.459000e-01   p_joint 2.203500e-01

Outputting figure to mutsig2_images.part000000000063/FBN3.18_8682_20000_0.1074_0.9459_0.22035.png
                gene_name: FBN3
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 12 percent done.
FAT2
Processing conservation and coverage...
76% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.840946e-02	ci left: 6.461925e-01	ci right 6.649168e-01	k: 6556	n:10000
Cons ci ratio: 3.770207e-02	ci left: 5.095531e-01	ci right 5.292356e-01	k: 5194	n:10000
KS ci ratio: 4.022656e-02	ci left: 4.771585e-01	ci right 4.968491e-01	k: 4870	n:10000
FAT2   10000 perm   3 sec   (2876 perm/sec)   p_kst 4.870000e-01   p_cons 5.194000e-01   p_joint 6.556000e-01

Outputting figure to mutsig2_images.part000000000063/FAT2.16_13142_10000_0.487_0.5194_0.6556.png
                gene_name: FAT2
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.66 

Current progress: 15 percent done.
FBN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.041197e-02	ci left: 2.281991e-01	ci right 2.449546e-01	k: 2365	n:10000
Cons ci ratio: 1.322110e-01	ci left: 7.543425e-02	ci right 8.621143e-02	k: 807	n:10000
KS ci ratio: 4.875899e-02	ci left: 3.829118e-01	ci right 4.021508e-01	k: 3925	n:10000
FBN1   10000 perm   3 sec   (3616 perm/sec)   p_kst 3.925000e-01   p_cons 8.070000e-02   p_joint 2.365000e-01

Joint ci ratio: 5.101892e-02	ci left: 2.220518e-01	ci right 2.337274e-01	k: 4557	n:20000
Cons ci ratio: 9.516495e-02	ci left: 7.446665e-02	ci right 8.195653e-02	k: 1563	n:20000
KS ci ratio: 3.446310e-02	ci left: 3.859728e-01	ci right 3.995584e-01	k: 7855	n:20000
FBN1   20000 perm   6 sec   (3349 perm/sec)   p_kst 3.927500e-01   p_cons 7.815000e-02   p_joint 2.278500e-01

Outputting figure to mutsig2_images.part000000000063/FBN1.14_8876_20000_0.39275_0.07815_0.22785.png
                gene_name: FBN1
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.078 
      ci_cons_bounds_left: 0.074 
     ci_cons_bounds_right: 0.082 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 17 percent done.
FAP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.240747e-02	ci left: 1.454077e-01	ci right 1.595954e-01	k: 1524	n:10000
Cons ci ratio: 2.276270e-01	ci left: 2.551545e-02	ci right 3.216281e-02	k: 287	n:10000
KS ci ratio: 2.210680e-02	ci left: 7.501892e-01	ci right 7.670598e-01	k: 7587	n:10000
FAP   10000 perm   2 sec   (5187 perm/sec)   p_kst 7.587000e-01   p_cons 2.870000e-02   p_joint 1.524000e-01

Joint ci ratio: 7.523915e-02	ci left: 1.149858e-01	ci right 1.240251e-01	k: 2389	n:20000
Cons ci ratio: 1.562733e-01	ci left: 2.811217e-02	ci right 3.292560e-02	k: 609	n:20000
KS ci ratio: 1.518556e-02	ci left: 7.632462e-01	ci right 7.749754e-01	k: 15383	n:20000
FAP   20000 perm   4 sec   (4695 perm/sec)   p_kst 7.691500e-01   p_cons 3.045000e-02   p_joint 1.194500e-01

Joint ci ratio: 5.652369e-02	ci left: 1.342474e-01	ci right 1.420895e-01	k: 4144	n:30000
Cons ci ratio: 1.382469e-01	ci left: 2.429301e-02	ci right 2.793288e-02	k: 782	n:30000
KS ci ratio: 1.263213e-02	ci left: 7.576090e-01	ci right 7.672734e-01	k: 22874	n:30000
FAP   30000 perm   7 sec   (4503 perm/sec)   p_kst 7.624667e-01   p_cons 2.606667e-02   p_joint 1.381333e-01

Joint ci ratio: 5.047529e-02	ci left: 1.277079e-01	ci right 1.343458e-01	k: 5240	n:40000
Cons ci ratio: 1.207994e-01	ci left: 2.409850e-02	ci right 2.722087e-02	k: 1025	n:40000
KS ci ratio: 1.091005e-02	ci left: 7.592539e-01	ci right 7.676078e-01	k: 30538	n:40000
FAP   40000 perm   9 sec   (4352 perm/sec)   p_kst 7.634500e-01   p_cons 2.562500e-02   p_joint 1.310000e-01

Joint ci ratio: 4.749120e-02	ci left: 1.170648e-01	ci right 1.227794e-01	k: 5995	n:50000
Cons ci ratio: 1.074674e-01	ci left: 2.452533e-02	ci right 2.733007e-02	k: 1295	n:50000
KS ci ratio: 9.718532e-03	ci left: 7.611778e-01	ci right 7.686314e-01	k: 38246	n:50000
FAP   50000 perm   12 sec   (4237 perm/sec)   p_kst 7.649200e-01   p_cons 2.590000e-02   p_joint 1.199000e-01

Joint ci ratio: 4.088005e-02	ci left: 1.301602e-01	ci right 1.356087e-01	k: 7972	n:60000
Cons ci ratio: 9.671480e-02	ci left: 2.535962e-02	ci right 2.795311e-02	k: 1598	n:60000
KS ci ratio: 8.905557e-03	ci left: 7.601291e-01	ci right 7.669454e-01	k: 45813	n:60000
FAP   60000 perm   15 sec   (4128 perm/sec)   p_kst 7.635500e-01   p_cons 2.663333e-02   p_joint 1.328667e-01

Outputting figure to mutsig2_images.part000000000063/FAP.10_2387_60000_0.76355_0.026633_0.13287.png
                gene_name: FAP
               theta_stop: 0.097 
                    nperm: 60000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.027 
      ci_cons_bounds_left: 0.025 
     ci_cons_bounds_right: 0.028 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 20 percent done.
FARP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.761308e-02	ci left: 3.942620e-01	ci right 4.135940e-01	k: 4039	n:10000
Cons ci ratio: 8.856681e-02	ci left: 1.564968e-01	ci right 1.710996e-01	k: 1637	n:10000
KS ci ratio: 3.774740e-02	ci left: 5.089528e-01	ci right 5.286362e-01	k: 5188	n:10000
FARP2   10000 perm   2 sec   (4819 perm/sec)   p_kst 5.188000e-01   p_cons 1.637000e-01   p_joint 4.039000e-01

Outputting figure to mutsig2_images.part000000000063/FARP2.7_3269_10000_0.5188_0.1637_0.4039.png
                gene_name: FARP2
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 22 percent done.
FBXO11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.773593e-02	ci left: 8.225936e-01	ci right 8.374136e-01	k: 8301	n:10000
Cons ci ratio: 1.151171e-01	ci left: 9.788810e-02	ci right 1.099437e-01	k: 1038	n:10000
KS ci ratio: 1.788029e-02	ci left: 8.202549e-01	ci right 8.351537e-01	k: 8278	n:10000
FBXO11   10000 perm   2 sec   (5426 perm/sec)   p_kst 8.278000e-01   p_cons 1.038000e-01   p_joint 8.301000e-01

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 8.111878e-02	ci left: 1.002931e-01	ci right 1.088222e-01	k: 2090	n:20000
KS ci ratio: 1.276009e-02	ci left: 8.198137e-01	ci right 8.303917e-01	k: 16503	n:20000
FBXO11   20000 perm   4 sec   (4860 perm/sec)   p_kst 8.251500e-01   p_cons 1.045000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000063/FBXO11.6_2966_20000_0.82515_0.1045_1.png
                gene_name: FBXO11
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 24 percent done.
FBXO22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.147853e-02	ci left: 4.618753e-01	ci right 4.815412e-01	k: 4717	n:10000
Cons ci ratio: 8.151886e-02	ci left: 1.800887e-01	ci right 1.954937e-01	k: 1877	n:10000
KS ci ratio: 1.994303e-02	ci left: 7.863438e-01	ci right 8.022844e-01	k: 7944	n:10000
FBXO22   10000 perm   2 sec   (5984 perm/sec)   p_kst 7.944000e-01   p_cons 1.877000e-01   p_joint 4.717000e-01

Outputting figure to mutsig2_images.part000000000063/FBXO22.6_1277_10000_0.7944_0.1877_0.4717.png
                gene_name: FBXO22
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 27 percent done.
FBXO43
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.466281e-02	ci left: 7.074534e-01	ci right 7.252204e-01	k: 7164	n:10000
Cons ci ratio: 5.447022e-02	ci left: 3.318056e-01	ci right 3.504870e-01	k: 3411	n:10000
KS ci ratio: 2.558774e-02	ci left: 6.921210e-01	ci right 7.101617e-01	k: 7012	n:10000
FBXO43   10000 perm   2 sec   (5043 perm/sec)   p_kst 7.012000e-01   p_cons 3.411000e-01   p_joint 7.164000e-01

Outputting figure to mutsig2_images.part000000000063/FBXO43.6_2147_10000_0.7012_0.3411_0.7164.png
                gene_name: FBXO43
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 29 percent done.
FBXW10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.295412e-02	ci left: 8.955947e-01	ci right 9.073703e-01	k: 9016	n:10000
Cons ci ratio: 3.039364e-02	ci left: 6.149237e-01	ci right 6.340038e-01	k: 6245	n:10000
KS ci ratio: 3.091423e-02	ci left: 6.068871e-01	ci right 6.260450e-01	k: 6165	n:10000
FBXW10   10000 perm   2 sec   (4889 perm/sec)   p_kst 6.165000e-01   p_cons 6.245000e-01   p_joint 9.016000e-01

Outputting figure to mutsig2_images.part000000000063/FBXW10.6_3212_10000_0.6165_0.6245_0.9016.png
                gene_name: FBXW10
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 32 percent done.
FARP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.033904e-02	ci left: 7.797545e-01	ci right 7.958775e-01	k: 7879	n:10000
KS ci ratio: 3.943783e-02	ci left: 4.870525e-01	ci right 5.067493e-01	k: 4969	n:10000
FARP1   10000 perm   2 sec   (5098 perm/sec)   p_kst 4.969000e-01   p_cons 7.879000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000063/FARP1.5_3465_10000_0.4969_0.7879_1.png
                gene_name: FARP1
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 34 percent done.
FARSA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.126828e-02	ci left: 6.014639e-01	ci right 6.206713e-01	k: 6111	n:10000
Cons ci ratio: 5.436136e-02	ci left: 3.326995e-01	ci right 3.513926e-01	k: 3420	n:10000
KS ci ratio: 9.445442e-03	ci left: 9.405580e-01	ci right 9.495805e-01	k: 9452	n:10000
FARSA   10000 perm   2 sec   (5855 perm/sec)   p_kst 9.452000e-01   p_cons 3.420000e-01   p_joint 6.111000e-01

Outputting figure to mutsig2_images.part000000000063/FARSA.5_1579_10000_0.9452_0.342_0.6111.png
                gene_name: FARSA
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 37 percent done.
FASTKD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.836432e-02	ci left: 5.008505e-01	ci right 5.205433e-01	k: 5107	n:10000
Cons ci ratio: 7.171345e-03	ci left: 9.640458e-01	ci right 9.710784e-01	k: 9677	n:10000
KS ci ratio: 6.780486e-02	ci left: 2.419322e-01	ci right 2.590133e-01	k: 2504	n:10000
FASTKD3   10000 perm   2 sec   (5880 perm/sec)   p_kst 2.504000e-01   p_cons 9.677000e-01   p_joint 5.107000e-01

Outputting figure to mutsig2_images.part000000000063/FASTKD3.5_2013_10000_0.2504_0.9677_0.5107.png
                gene_name: FASTKD3
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 39 percent done.
FBXO4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.503252e-02	ci left: 4.212652e-01	ci right 4.407750e-01	k: 4310	n:10000
Cons ci ratio: 5.221033e-02	ci left: 3.509817e-01	ci right 3.698997e-01	k: 3604	n:10000
KS ci ratio: 9.008395e-02	ci left: 1.519811e-01	ci right 1.664180e-01	k: 1591	n:10000
FBXO4   10000 perm   2 sec   (6018 perm/sec)   p_kst 1.591000e-01   p_cons 3.604000e-01   p_joint 4.310000e-01

Outputting figure to mutsig2_images.part000000000063/FBXO4.5_1218_10000_0.1591_0.3604_0.431.png
                gene_name: FBXO4
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 41 percent done.
FASTKD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.291978e-02	ci left: 3.448197e-01	ci right 3.636653e-01	k: 3542	n:10000
Cons ci ratio: 1.097680e-01	ci left: 1.068582e-01	ci right 1.193681e-01	k: 1130	n:10000
KS ci ratio: 2.813948e-02	ci left: 6.505193e-01	ci right 6.691875e-01	k: 6599	n:10000
FASTKD1   10000 perm   2 sec   (5404 perm/sec)   p_kst 6.599000e-01   p_cons 1.130000e-01   p_joint 3.542000e-01

Joint ci ratio: 3.450287e-02	ci left: 3.854245e-01	ci right 3.990068e-01	k: 7844	n:20000
Cons ci ratio: 7.740712e-02	ci left: 1.092336e-01	ci right 1.180791e-01	k: 2272	n:20000
KS ci ratio: 2.070013e-02	ci left: 6.352603e-01	ci right 6.485984e-01	k: 12839	n:20000
FASTKD1   20000 perm   4 sec   (4875 perm/sec)   p_kst 6.419500e-01   p_cons 1.136000e-01   p_joint 3.922000e-01

Outputting figure to mutsig2_images.part000000000063/FASTKD1.4_2600_20000_0.64195_0.1136_0.3922.png
                gene_name: FASTKD1
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.40 

Current progress: 44 percent done.
FBXL20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.254592e-02	ci left: 5.821915e-01	ci right 6.015549e-01	k: 5919	n:10000
Cons ci ratio: 6.197770e-03	ci left: 9.724899e-01	ci right 9.786288e-01	k: 9757	n:10000
KS ci ratio: 3.916278e-02	ci left: 4.905513e-01	ci right 5.102485e-01	k: 5004	n:10000
FBXL20   10000 perm   2 sec   (5714 perm/sec)   p_kst 5.004000e-01   p_cons 9.757000e-01   p_joint 5.919000e-01

Outputting figure to mutsig2_images.part000000000063/FBXL20.4_1371_10000_0.5004_0.9757_0.5919.png
                gene_name: FBXL20
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 46 percent done.
FBXL7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.078065e-02	ci left: 3.638081e-01	ci right 3.828658e-01	k: 3733	n:10000
Cons ci ratio: 1.060498e-01	ci left: 1.137899e-01	ci right 1.266323e-01	k: 1201	n:10000
KS ci ratio: 7.312811e-02	ci left: 2.149717e-01	ci right 2.313898e-01	k: 2231	n:10000
FBXL7   10000 perm   2 sec   (6162 perm/sec)   p_kst 2.231000e-01   p_cons 1.201000e-01   p_joint 3.733000e-01

Joint ci ratio: 6.172804e-02	ci left: 1.625952e-01	ci right 1.730015e-01	k: 3355	n:20000
Cons ci ratio: 7.449765e-02	ci left: 1.170516e-01	ci right 1.261587e-01	k: 2431	n:20000
KS ci ratio: 5.216900e-02	ci left: 2.143740e-01	ci right 2.259075e-01	k: 4402	n:20000
FBXL7   20000 perm   4 sec   (5483 perm/sec)   p_kst 2.201000e-01   p_cons 1.215500e-01   p_joint 1.677500e-01

Outputting figure to mutsig2_images.part000000000063/FBXL7.4_1492_20000_0.2201_0.12155_0.16775.png
                gene_name: FBXL7
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 49 percent done.
FBXO15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.456935e-01	ci left: 6.256264e-02	ci right 7.249110e-02	k: 674	n:10000
Cons ci ratio: 2.895240e-01	ci left: 1.539246e-02	ci right 2.069361e-02	k: 179	n:10000
KS ci ratio: 2.511240e-02	ci left: 6.999874e-01	ci right 7.178907e-01	k: 7090	n:10000
FBXO15   10000 perm   2 sec   (5839 perm/sec)   p_kst 7.090000e-01   p_cons 1.790000e-02   p_joint 6.740000e-02

Joint ci ratio: 8.878972e-02	ci left: 8.484372e-02	ci right 9.277630e-02	k: 1775	n:20000
Cons ci ratio: 2.305348e-01	ci left: 1.260619e-02	ci right 1.593723e-02	k: 284	n:20000
KS ci ratio: 1.688281e-02	ci left: 7.231848e-01	ci right 7.355485e-01	k: 14588	n:20000
FBXO15   20000 perm   4 sec   (5218 perm/sec)   p_kst 7.294000e-01   p_cons 1.420000e-02   p_joint 8.875000e-02

Joint ci ratio: 6.035749e-02	ci left: 1.195337e-01	ci right 1.270061e-01	k: 3697	n:30000
Cons ci ratio: 1.897008e-01	ci left: 1.270105e-02	ci right 1.539427e-02	k: 420	n:30000
KS ci ratio: 1.382325e-02	ci left: 7.232277e-01	ci right 7.333281e-01	k: 21849	n:30000
FBXO15   30000 perm   6 sec   (4994 perm/sec)   p_kst 7.283000e-01   p_cons 1.400000e-02   p_joint 1.232333e-01

Joint ci ratio: 5.969901e-02	ci left: 9.438781e-02	ci right 1.002208e-01	k: 3891	n:40000
Cons ci ratio: 1.637448e-01	ci left: 1.296745e-02	ci right 1.530387e-02	k: 564	n:40000
KS ci ratio: 1.202956e-02	ci left: 7.219772e-01	ci right 7.307399e-01	k: 29055	n:40000
FBXO15   40000 perm   8 sec   (4844 perm/sec)   p_kst 7.263750e-01   p_cons 1.410000e-02   p_joint 9.727500e-02

Joint ci ratio: 4.695009e-02	ci left: 1.194798e-01	ci right 1.252441e-01	k: 6117	n:50000
Cons ci ratio: 1.458571e-01	ci left: 1.320050e-02	ci right 1.529645e-02	k: 711	n:50000
KS ci ratio: 1.075836e-02	ci left: 7.224894e-01	ci right 7.303243e-01	k: 36321	n:50000
FBXO15   50000 perm   11 sec   (4728 perm/sec)   p_kst 7.264200e-01   p_cons 1.422000e-02   p_joint 1.223400e-01

Joint ci ratio: 4.337806e-02	ci left: 1.171953e-01	ci right 1.224082e-01	k: 7187	n:60000
Cons ci ratio: 1.347088e-01	ci left: 1.297845e-02	ci right 1.486900e-02	k: 834	n:60000
KS ci ratio: 9.830563e-03	ci left: 7.224455e-01	ci right 7.295993e-01	k: 43562	n:60000
FBXO15   60000 perm   13 sec   (4614 perm/sec)   p_kst 7.260333e-01   p_cons 1.390000e-02   p_joint 1.197833e-01

Joint ci ratio: 3.981320e-02	ci left: 1.192158e-01	ci right 1.240727e-01	k: 8514	n:70000
Cons ci ratio: 1.247271e-01	ci left: 1.304576e-02	ci right 1.479488e-02	k: 973	n:70000
KS ci ratio: 9.090665e-03	ci left: 7.231814e-01	ci right 7.297998e-01	k: 50855	n:70000
FBXO15   70000 perm   15 sec   (4525 perm/sec)   p_kst 7.265000e-01   p_cons 1.390000e-02   p_joint 1.216286e-01

Joint ci ratio: 3.956604e-02	ci left: 1.071210e-01	ci right 1.114573e-01	k: 8742	n:80000
Cons ci ratio: 1.154237e-01	ci left: 1.339154e-02	ci right 1.504397e-02	k: 1136	n:80000
KS ci ratio: 8.504079e-03	ci left: 7.233716e-01	ci right 7.295620e-01	k: 58118	n:80000
FBXO15   80000 perm   18 sec   (4444 perm/sec)   p_kst 7.264750e-01   p_cons 1.420000e-02   p_joint 1.092750e-01

Joint ci ratio: 3.731362e-02	ci left: 1.071915e-01	ci right 1.112782e-01	k: 9830	n:90000
Cons ci ratio: 1.080169e-01	ci left: 1.364262e-02	ci right 1.521113e-02	k: 1297	n:90000
KS ci ratio: 8.001533e-03	ci left: 7.243553e-01	ci right 7.301856e-01	k: 65455	n:90000
FBXO15   90000 perm   21 sec   (4368 perm/sec)   p_kst 7.272778e-01   p_cons 1.441111e-02   p_joint 1.092222e-01

Joint ci ratio: 3.619106e-02	ci left: 1.030966e-01	ci right 1.069064e-01	k: 10499	n:100000
Cons ci ratio: 1.020876e-01	ci left: 1.378770e-02	ci right 1.528065e-02	k: 1452	n:100000
KS ci ratio: 7.607722e-03	ci left: 7.236254e-01	ci right 7.291615e-01	k: 72640	n:100000
FBXO15   100000 perm   23 sec   (4291 perm/sec)   p_kst 7.264000e-01   p_cons 1.452000e-02   p_joint 1.049900e-01

Joint ci ratio: 3.607668e-02	ci left: 9.517597e-02	ci right 9.868168e-02	k: 10661	n:110000
Cons ci ratio: 9.731510e-02	ci left: 1.382847e-02	ci right 1.525184e-02	k: 1598	n:110000
KS ci ratio: 7.259653e-03	ci left: 7.234268e-01	ci right 7.287068e-01	k: 79868	n:110000
FBXO15   110000 perm   26 sec   (4221 perm/sec)   p_kst 7.260727e-01   p_cons 1.452727e-02   p_joint 9.691818e-02

Outputting figure to mutsig2_images.part000000000063/FBXO15.4_1573_110000_0.72607_0.014527_0.096918.png
                gene_name: FBXO15
               theta_stop: 0.097 
                    nperm: 110000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.015 
      ci_cons_bounds_left: 0.014 
     ci_cons_bounds_right: 0.015 
                  p_joint: 0.097 
     ci_joint_bounds_left: 0.095 
    ci_joint_bounds_right: 0.099 

Current progress: 51 percent done.
FBXO30
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.304679e-02	ci left: 5.747677e-01	ci right 5.941831e-01	k: 5845	n:10000
Cons ci ratio: 8.438058e-02	ci left: 1.699576e-01	ci right 1.850308e-01	k: 1774	n:10000
KS ci ratio: 2.132749e-02	ci left: 7.632436e-01	ci right 7.797979e-01	k: 7716	n:10000
FBXO30   10000 perm   2 sec   (5839 perm/sec)   p_kst 7.716000e-01   p_cons 1.774000e-01   p_joint 5.845000e-01

Outputting figure to mutsig2_images.part000000000063/FBXO30.4_2246_10000_0.7716_0.1774_0.5845.png
                gene_name: FBXO30
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 54 percent done.
FBXO40
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.205851e-02	ci left: 7.509985e-01	ci right 7.678501e-01	k: 7595	n:10000
Cons ci ratio: 6.214964e-02	ci left: 2.756709e-01	ci right 2.934548e-01	k: 2845	n:10000
KS ci ratio: 2.086731e-02	ci left: 7.709396e-01	ci right 7.872974e-01	k: 7792	n:10000
FBXO40   10000 perm   2 sec   (6156 perm/sec)   p_kst 7.792000e-01   p_cons 2.845000e-01   p_joint 7.595000e-01

Outputting figure to mutsig2_images.part000000000063/FBXO40.4_2142_10000_0.7792_0.2845_0.7595.png
                gene_name: FBXO40
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 56 percent done.
FBLN2
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.169081e-02	ci left: 5.950381e-01	ci right 6.143009e-01	k: 6047	n:10000
Cons ci ratio: 1.504163e-02	ci left: 8.649871e-01	ci right 8.781956e-01	k: 8717	n:10000
KS ci ratio: 1.153030e-01	ci left: 9.759583e-02	ci right 1.096362e-01	k: 1035	n:10000
FBLN2   10000 perm   2 sec   (6208 perm/sec)   p_kst 1.035000e-01   p_cons 8.717000e-01   p_joint 6.047000e-01

Joint ci ratio: 2.241935e-02	ci left: 5.976837e-01	ci right 6.112859e-01	k: 12090	n:20000
Cons ci ratio: 1.133732e-02	ci left: 8.517673e-01	ci right 8.615288e-01	k: 17134	n:20000
KS ci ratio: 8.155502e-02	ci left: 9.931124e-02	ci right 1.078044e-01	k: 2070	n:20000
FBLN2   20000 perm   4 sec   (5520 perm/sec)   p_kst 1.035000e-01   p_cons 8.567000e-01   p_joint 6.045000e-01

Outputting figure to mutsig2_images.part000000000063/FBLN2.2_2454_20000_0.1035_0.8567_0.6045.png
                gene_name: FBLN2
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.099 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.61 

Current progress: 59 percent done.
FBXL13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.749028e-02	ci left: 8.265603e-01	ci right 8.412446e-01	k: 8340	n:10000
Cons ci ratio: 1.205181e-02	ci left: 9.080250e-01	ci right 9.191326e-01	k: 9137	n:10000
KS ci ratio: 4.237119e-02	ci left: 4.512924e-01	ci right 4.709303e-01	k: 4611	n:10000
FBXL13   10000 perm   2 sec   (5690 perm/sec)   p_kst 4.611000e-01   p_cons 9.137000e-01   p_joint 8.340000e-01

Outputting figure to mutsig2_images.part000000000063/FBXL13.3_2280_10000_0.4611_0.9137_0.834.png
                gene_name: FBXL13
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 61 percent done.
FBXL18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.716947e-02	ci left: 5.166574e-01	ci right 5.363271e-01	k: 5265	n:10000
Cons ci ratio: 9.258663e-02	ci left: 1.449173e-01	ci right 1.590860e-01	k: 1519	n:10000
KS ci ratio: 3.595726e-02	ci left: 5.331752e-01	ci right 5.527998e-01	k: 5430	n:10000
FBXL18   10000 perm   2 sec   (5830 perm/sec)   p_kst 5.430000e-01   p_cons 1.519000e-01   p_joint 5.265000e-01

Outputting figure to mutsig2_images.part000000000063/FBXL18.3_2177_10000_0.543_0.1519_0.5265.png
                gene_name: FBXL18
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 63 percent done.
FBXO31
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.924285e-02	ci left: 3.782339e-01	ci right 3.974315e-01	k: 3878	n:10000
KS ci ratio: 2.152702e-02	ci left: 7.599031e-01	ci right 7.765404e-01	k: 7683	n:10000
FBXO31   10000 perm   2 sec   (6288 perm/sec)   p_kst 7.683000e-01   p_cons 3.878000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000063/FBXO31.3_1656_10000_0.7683_0.3878_1.png
                gene_name: FBXO31
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 66 percent done.
FBXO47
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.628821e-02	ci left: 8.457031e-01	ci right 8.596908e-01	k: 8528	n:10000
KS ci ratio: 2.446268e-02	ci left: 7.107838e-01	ci right 7.284881e-01	k: 7197	n:10000
FBXO47   10000 perm   2 sec   (6238 perm/sec)   p_kst 7.197000e-01   p_cons 8.528000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000063/FBXO47.3_1399_10000_0.7197_0.8528_1.png
                gene_name: FBXO47
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
FARS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.526715e-02	ci left: 3.253512e-01	ci right 3.439452e-01	k: 3346	n:10000
Cons ci ratio: 1.179891e-01	ci left: 9.350575e-02	ci right 1.053288e-01	k: 993	n:10000
KS ci ratio: 4.495916e-02	ci left: 4.220628e-01	ci right 4.415769e-01	k: 4318	n:10000
FARS2   10000 perm   2 sec   (6456 perm/sec)   p_kst 4.318000e-01   p_cons 9.930000e-02   p_joint 3.346000e-01

Joint ci ratio: 2.234909e-02	ci left: 5.991880e-01	ci right 6.127812e-01	k: 12120	n:20000
Cons ci ratio: 8.278669e-02	ci left: 9.661171e-02	ci right 1.050047e-01	k: 2015	n:20000
KS ci ratio: 3.154235e-02	ci left: 4.288128e-01	ci right 4.426059e-01	k: 8714	n:20000
FARS2   20000 perm   3 sec   (5797 perm/sec)   p_kst 4.357000e-01   p_cons 1.007500e-01   p_joint 6.060000e-01

Outputting figure to mutsig2_images.part000000000063/FARS2.2_1380_20000_0.4357_0.10075_0.606.png
                gene_name: FARS2
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.097 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.61 

Current progress: 71 percent done.
FASN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.223354e-02	ci left: 7.480651e-01	ci right 7.649852e-01	k: 7566	n:10000
KS ci ratio: 2.432331e-02	ci left: 7.131053e-01	ci right 7.307652e-01	k: 7220	n:10000
FASN   10000 perm   2 sec   (4439 perm/sec)   p_kst 7.220000e-01   p_cons 7.566000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000063/FASN.2_7704_10000_0.722_0.7566_1.png
                gene_name: FASN
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
FATE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.626109e-02	ci left: 6.810325e-01	ci right 6.992566e-01	k: 6902	n:10000
Cons ci ratio: 2.080668e-02	ci left: 7.719526e-01	ci right 7.882839e-01	k: 7802	n:10000
KS ci ratio: 9.545513e-02	ci left: 1.373691e-01	ci right 1.512388e-01	k: 1442	n:10000
FATE1   10000 perm   1 sec   (7321 perm/sec)   p_kst 1.442000e-01   p_cons 7.802000e-01   p_joint 6.902000e-01

Outputting figure to mutsig2_images.part000000000063/FATE1.2_572_10000_0.1442_0.7802_0.6902.png
                gene_name: FATE1
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 76 percent done.
FBL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.489697e-02	ci left: 3.283299e-01	ci right 3.469648e-01	k: 3376	n:10000
Cons ci ratio: 9.178519e-03	ci left: 9.435701e-01	ci right 9.523667e-01	k: 9481	n:10000
KS ci ratio: 5.775266e-02	ci left: 3.061982e-01	ci right 3.245095e-01	k: 3153	n:10000
FBL   10000 perm   2 sec   (6581 perm/sec)   p_kst 3.153000e-01   p_cons 9.481000e-01   p_joint 3.376000e-01

Outputting figure to mutsig2_images.part000000000063/FBL.2_1002_10000_0.3153_0.9481_0.3376.png
                gene_name: FBL
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 78 percent done.
FBXL16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.211887e-02	ci left: 7.499869e-01	ci right 7.668623e-01	k: 7585	n:10000
KS ci ratio: 6.089172e-02	ci left: 2.839917e-01	ci right 3.019291e-01	k: 2929	n:10000
FBXL16   10000 perm   2 sec   (6428 perm/sec)   p_kst 2.929000e-01   p_cons 7.585000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000063/FBXL16.2_1460_10000_0.2929_0.7585_1.png
                gene_name: FBXL16
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
FBXL19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.497592e-02	ci left: 5.468981e-01	ci right 5.664689e-01	k: 5567	n:10000
KS ci ratio: 6.541742e-02	ci left: 2.554791e-01	ci right 2.728584e-01	k: 2641	n:10000
FBXL19   10000 perm   2 sec   (6208 perm/sec)   p_kst 2.641000e-01   p_cons 5.567000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000063/FBXL19.2_2129_10000_0.2641_0.5567_1.png
                gene_name: FBXL19
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
FBXO10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.993082e-02	ci left: 7.865466e-01	ci right 8.024815e-01	k: 7946	n:10000
KS ci ratio: 4.703560e-03	ci left: 9.833923e-01	ci right 9.881185e-01	k: 9859	n:10000
FBXO10   10000 perm   2 sec   (5923 perm/sec)   p_kst 9.859000e-01   p_cons 7.946000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000063/FBXO10.2_2911_10000_0.9859_0.7946_1.png
                gene_name: FBXO10
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 85 percent done.
FBXO18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.384527e-02	ci left: 7.210814e-01	ci right 7.385845e-01	k: 7299	n:10000
Cons ci ratio: 4.978634e-02	ci left: 3.730595e-01	ci right 3.922089e-01	k: 3826	n:10000
KS ci ratio: 3.308762e-02	ci left: 5.741659e-01	ci right 5.935853e-01	k: 5839	n:10000
FBXO18   10000 perm   2 sec   (4501 perm/sec)   p_kst 5.839000e-01   p_cons 3.826000e-01   p_joint 7.299000e-01

Outputting figure to mutsig2_images.part000000000063/FBXO18.2_3378_10000_0.5839_0.3826_0.7299.png
                gene_name: FBXO18
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 88 percent done.
FBXO27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.990893e-02	ci left: 2.307670e-01	ci right 2.475852e-01	k: 2391	n:10000
Cons ci ratio: 2.374855e-02	ci left: 7.226973e-01	ci right 7.401677e-01	k: 7315	n:10000
KS ci ratio: 1.685670e-01	ci left: 4.696137e-02	ci right 5.570235e-02	k: 512	n:10000
FBXO27   10000 perm   1 sec   (7026 perm/sec)   p_kst 5.120000e-02   p_cons 7.315000e-01   p_joint 2.391000e-01

Joint ci ratio: 2.605359e-02	ci left: 5.239547e-01	ci right 5.378364e-01	k: 10618	n:20000
Cons ci ratio: 1.679089e-02	ci left: 7.253500e-01	ci right 7.376827e-01	k: 14631	n:20000
KS ci ratio: 1.175168e-01	ci left: 4.959502e-02	ci right 5.583583e-02	k: 1053	n:20000
FBXO27   20000 perm   4 sec   (5157 perm/sec)   p_kst 5.265000e-02   p_cons 7.315500e-01   p_joint 5.309000e-01

Joint ci ratio: 2.129024e-02	ci left: 5.248332e-01	ci right 5.361609e-01	k: 15915	n:30000
Cons ci ratio: 1.371851e-02	ci left: 7.262450e-01	ci right 7.363102e-01	k: 21939	n:30000
KS ci ratio: 9.679586e-02	ci left: 4.931898e-02	ci right 5.436826e-02	k: 1554	n:30000
FBXO27   30000 perm   6 sec   (5092 perm/sec)   p_kst 5.180000e-02   p_cons 7.313000e-01   p_joint 5.305000e-01

Outputting figure to mutsig2_images.part000000000063/FBXO27.2_872_30000_0.0518_0.7313_0.5305.png
                gene_name: FBXO27
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.052 
        ci_ks_bounds_left: 0.049 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 90 percent done.
FBXO32
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.776400e-03	ci left: 9.888388e-01	ci right 9.926671e-01	k: 9909	n:10000
Cons ci ratio: 7.009630e-03	ci left: 9.655188e-01	ci right 9.724045e-01	k: 9691	n:10000
KS ci ratio: 1.159911e-01	ci left: 9.652432e-02	ci right 1.085084e-01	k: 1024	n:10000
FBXO32   10000 perm   1 sec   (6718 perm/sec)   p_kst 1.024000e-01   p_cons 9.691000e-01   p_joint 9.909000e-01

Joint ci ratio: 2.764294e-03	ci left: 9.887361e-01	ci right 9.915186e-01	k: 19804	n:20000
Cons ci ratio: 4.953057e-03	ci left: 9.666075e-01	ci right 9.714549e-01	k: 19382	n:20000
KS ci ratio: 8.222091e-02	ci left: 9.783865e-02	ci right 1.062774e-01	k: 2040	n:20000
FBXO32   20000 perm   3 sec   (5936 perm/sec)   p_kst 1.020000e-01   p_cons 9.691000e-01   p_joint 9.902000e-01

Outputting figure to mutsig2_images.part000000000063/FBXO32.2_1104_20000_0.102_0.9691_0.9902.png
                gene_name: FBXO32
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.098 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 93 percent done.
FBXO41
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 95 percent done.
FBXO46
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.844174e-02	ci left: 3.011400e-01	ci right 3.193706e-01	k: 3102	n:10000
Cons ci ratio: 9.215805e-02	ci left: 1.460943e-01	ci right 1.603084e-01	k: 1531	n:10000
KS ci ratio: 1.305483e-01	ci left: 7.727681e-02	ci right 8.816773e-02	k: 826	n:10000
FBXO46   10000 perm   2 sec   (6517 perm/sec)   p_kst 8.260000e-02   p_cons 1.531000e-01   p_joint 3.102000e-01

Joint ci ratio: 7.204010e-02	ci left: 1.242852e-01	ci right 1.336230e-01	k: 2578	n:20000
Cons ci ratio: 6.520432e-02	ci left: 1.480366e-01	ci right 1.580645e-01	k: 3060	n:20000
KS ci ratio: 9.246592e-02	ci left: 7.862504e-02	ci right 8.629687e-02	k: 1648	n:20000
FBXO46   20000 perm   3 sec   (5762 perm/sec)   p_kst 8.240000e-02   p_cons 1.530000e-01   p_joint 1.289000e-01

Outputting figure to mutsig2_images.part000000000063/FBXO46.2_1816_20000_0.0824_0.153_0.1289.png
                gene_name: FBXO46
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.082 
        ci_ks_bounds_left: 0.079 
       ci_ks_bounds_right: 0.086 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 98 percent done.
FBXO7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.077635e-02	ci left: 7.724591e-01	ci right 7.887771e-01	k: 7807	n:10000
Cons ci ratio: 3.986605e-02	ci left: 4.816553e-01	ci right 5.013497e-01	k: 4915	n:10000
KS ci ratio: 3.605153e-02	ci left: 5.318734e-01	ci right 5.515023e-01	k: 5417	n:10000
FBXO7   10000 perm   2 sec   (6462 perm/sec)   p_kst 5.417000e-01   p_cons 4.915000e-01   p_joint 7.807000e-01

Outputting figure to mutsig2_images.part000000000063/FBXO7.2_1646_10000_0.5417_0.4915_0.7807.png
                gene_name: FBXO7
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000063
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 63 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1539>
Subject: Job 8004076: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1539>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000064> was used as the working directory.
Started at Sun Nov 11 15:05:53 2012
Results reported at Sun Nov 11 15:25:55 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000064.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000064.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 64  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000064.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1433.68 sec.
    Max Memory :      4772 MB
    Max Swap   :      7175 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
64
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 64
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 64: processing genes 5701 - 5790
Calculating significance of each gene.
Using projection method.
5701	FBXW11	7.368910e-01
5702	FBXW12	4.664626e-01
5703	FBXW2	1
5704	FBXW4	1
5705	FBXW5	4.826875e-01
5706	FBXW7	3.133060e-01
5707	FBXW8	9.093301e-01
5708	FBXW9	2.434912e-01
5709	FCAMR	4.365323e-01
5710	FCAR	1.082661e-04
5711	FCER1A	5.944574e-01
5712	FCER1G	2.285417e-01
5713	FCER2	5.117388e-01
5714	FCF1	5.233221e-01
5715	FCGBP	1
5716	FCGR1A	1
5717	FCGR1B	5.921252e-01
5718	FCGR2A	3.786809e-01
5719	FCGR2B	5.963195e-02
5720	FCGR2C	1
5721	FCGR3A	5.187488e-02
5722	FCGR3B	2.508011e-01
5723	FCGRT	1
5724	FCHO1	6.579257e-01
5725	FCHO2	5.220924e-01
5726	FCHSD1	6.889991e-01
5727	FCHSD2	7.340934e-01
5728	FCN1	1.263343e-01
5729	FCN2	7.621785e-01
5730	FCN3	7.710287e-01
5731	FCRL1	6.419329e-02
5732	FCRL2	2.773033e-01
5733	FCRL3	1
5734	FCRL4	1
5735	FCRL5	9.592789e-01
5736	FCRL6	8.433909e-01
5737	FCRLA	2.765831e-01
5738	FCRLB	8.281463e-01
5739	FDFT1	7.001678e-01
5740	FDPS	6.799736e-01
5741	FDX1	1
5742	FDX1L	3.315357e-01
5743	FDXACB1	7.680329e-01
5744	FDXR	5.648698e-01
5745	FECH	5.296600e-01
5746	FEM1A	6.297396e-01
5747	FEM1B	4.780848e-01
5748	FEM1C	7.574309e-01
5749	FEN1	1
5750	FER	6.421664e-01
5751	FER1L5	3.731256e-01
5752	FER1L6	2.704237e-01
5753	FERD3L	6.383660e-02
5754	FERMT1	8.681072e-01
5755	FERMT2	9.545155e-01
5756	FERMT3	1
5757	FES	1
5758	FETUB	1
5759	FEV	1
5760	FEZ1	7.449239e-01
5761	FEZ2	3.957742e-01
5762	FEZF1	6.780819e-01
5763	FEZF2	5.768862e-01
5764	FFAR1	1
5765	FFAR2	2.863989e-01
5766	FFAR3	1
5767	FGA	1
5768	FGB	1.545540e-01
5769	FGD1	6.724312e-01
5770	FGD2	6.250199e-01
5771	FGD3	8.169512e-01
5772	FGD4	8.124825e-01
5773	FGD5	5.240303e-01
5774	FGD6	7.732408e-01
5775	FGF1	1
5776	FGF10	1
5777	FGF11	1
5778	FGF12	1
5779	FGF13	1
5780	FGF14	2.978437e-01
5781	FGF16	1
5782	FGF17	1
5783	FGF18	3.550322e-01
5784	FGF19	1
5785	FGF2	3.812546e-02
5786	FGF20	1
5787	FGF21	1
5788	FGF22	2.623143e-01
5789	FGF23	3.291560e-01
5790	FGF3	3.407177e-01
Done

Running MutSig 2:
Scatter job 64: processing genes 5701 - 5790
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
FER1L6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.801080e-02	ci left: 3.902789e-01	ci right 4.095794e-01	k: 3999	n:10000
Cons ci ratio: 2.564880e-02	ci left: 6.911127e-01	ci right 7.091706e-01	k: 7002	n:10000
KS ci ratio: 7.452654e-02	ci left: 2.085598e-01	ci right 2.248056e-01	k: 2166	n:10000
FER1L6   10000 perm   3 sec   (3156 perm/sec)   p_kst 2.166000e-01   p_cons 7.002000e-01   p_joint 3.999000e-01

Outputting figure to mutsig2_images.part000000000064/FER1L6.13_5734_10000_0.2166_0.7002_0.3999.png
                gene_name: FER1L6
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 2 percent done.
FBXW7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.635411e-01	ci left: 5.460790e-03	ci right 8.835916e-03	k: 70	n:10000
Cons ci ratio: 7.944208e-02	ci left: 1.879635e-01	ci right 2.036141e-01	k: 1957	n:10000
KS ci ratio: 6.812237e-01	ci left: 2.189796e-03	ci right 4.514469e-03	k: 32	n:10000
FBXW7   10000 perm   2 sec   (4392 perm/sec)   p_kst 3.200000e-03   p_cons 1.957000e-01   p_joint 7.000000e-03

Joint ci ratio: 4.643804e-01	ci left: 2.729407e-03	ci right 4.420000e-03	k: 70	n:20000
Cons ci ratio: 5.528105e-02	ci left: 1.953164e-01	ci right 2.064707e-01	k: 4017	n:20000
KS ci ratio: 5.184634e-01	ci left: 2.115762e-03	ci right 3.634512e-03	k: 56	n:20000
FBXW7   20000 perm   5 sec   (3941 perm/sec)   p_kst 2.800000e-03   p_cons 2.008500e-01   p_joint 3.500000e-03

Joint ci ratio: 4.432679e-01	ci left: 2.026088e-03	ci right 3.206864e-03	k: 77	n:30000
Cons ci ratio: 4.520738e-02	ci left: 1.958497e-01	ci right 2.049417e-01	k: 6011	n:30000
KS ci ratio: 4.490775e-01	ci left: 1.966901e-03	ci right 3.132778e-03	k: 75	n:30000
FBXW7   30000 perm   8 sec   (3831 perm/sec)   p_kst 2.500000e-03   p_cons 2.003667e-01   p_joint 2.566667e-03

Joint ci ratio: 2.744276e-01	ci left: 4.378984e-03	ci right 5.794333e-03	k: 202	n:40000
Cons ci ratio: 3.916304e-02	ci left: 1.963624e-01	ci right 2.042311e-01	k: 8011	n:40000
KS ci ratio: 4.017006e-01	ci left: 1.899444e-03	ci right 2.875048e-03	k: 94	n:40000
FBXW7   40000 perm   11 sec   (3729 perm/sec)   p_kst 2.350000e-03   p_cons 2.002750e-01   p_joint 5.050000e-03

Joint ci ratio: 2.932901e-01	ci left: 3.038414e-03	ci right 4.100509e-03	k: 177	n:50000
Cons ci ratio: 3.506137e-02	ci left: 1.964815e-01	ci right 2.035133e-01	k: 9999	n:50000
KS ci ratio: 3.501734e-01	ci left: 2.063146e-03	ci right 2.956181e-03	k: 124	n:50000
FBXW7   50000 perm   14 sec   (3656 perm/sec)   p_kst 2.480000e-03   p_cons 1.999800e-01   p_joint 3.540000e-03

Joint ci ratio: 2.824463e-01	ci left: 2.748442e-03	ci right 3.667318e-03	k: 191	n:60000
Cons ci ratio: 3.200987e-02	ci left: 1.967559e-01	ci right 2.031731e-01	k: 11997	n:60000
KS ci ratio: 3.309110e-01	ci left: 1.947903e-03	ci right 2.734806e-03	k: 139	n:60000
FBXW7   60000 perm   17 sec   (3591 perm/sec)   p_kst 2.316667e-03   p_cons 1.999500e-01   p_joint 3.183333e-03

Joint ci ratio: 2.707451e-01	ci left: 2.581796e-03	ci right 3.403118e-03	k: 208	n:70000
Cons ci ratio: 2.968134e-02	ci left: 1.965023e-01	ci right 2.024369e-01	k: 13962	n:70000
KS ci ratio: 3.145110e-01	ci left: 1.866556e-03	ci right 2.575719e-03	k: 154	n:70000
FBXW7   70000 perm   20 sec   (3524 perm/sec)   p_kst 2.200000e-03   p_cons 1.994571e-01   p_joint 2.971429e-03

Joint ci ratio: 2.521272e-01	ci left: 2.632897e-03	ci right 3.403844e-03	k: 240	n:80000
Cons ci ratio: 2.780215e-02	ci left: 1.962630e-01	ci right 2.018089e-01	k: 15922	n:80000
KS ci ratio: 2.926648e-01	ci left: 1.910420e-03	ci right 2.576502e-03	k: 178	n:80000
FBXW7   80000 perm   23 sec   (3455 perm/sec)   p_kst 2.225000e-03   p_cons 1.990250e-01   p_joint 3.000000e-03

Joint ci ratio: 2.575844e-01	ci left: 2.236277e-03	ci right 2.907536e-03	k: 230	n:90000
Cons ci ratio: 2.630049e-02	ci left: 1.953566e-01	ci right 2.005740e-01	k: 17816	n:90000
KS ci ratio: 2.734712e-01	ci left: 1.966562e-03	ci right 2.599536e-03	k: 204	n:90000
FBXW7   90000 perm   27 sec   (3395 perm/sec)   p_kst 2.266667e-03   p_cons 1.979556e-01   p_joint 2.555556e-03

Joint ci ratio: 2.554107e-01	ci left: 2.050052e-03	ci right 2.659388e-03	k: 234	n:100000
Cons ci ratio: 2.498914e-02	ci left: 1.950065e-01	ci right 1.999511e-01	k: 19747	n:100000
KS ci ratio: 2.581784e-01	ci left: 2.003263e-03	ci right 2.606186e-03	k: 229	n:100000
FBXW7   100000 perm   30 sec   (3346 perm/sec)   p_kst 2.290000e-03   p_cons 1.974700e-01   p_joint 2.340000e-03

Joint ci ratio: 1.949102e-01	ci left: 3.306547e-03	ci right 4.029102e-03	k: 402	n:110000
Cons ci ratio: 2.380219e-02	ci left: 1.954404e-01	ci right 2.001574e-01	k: 21757	n:110000
KS ci ratio: 2.432889e-01	ci left: 2.068240e-03	ci right 2.649404e-03	k: 258	n:110000
FBXW7   110000 perm   33 sec   (3293 perm/sec)   p_kst 2.345455e-03   p_cons 1.977909e-01   p_joint 3.654545e-03

Joint ci ratio: 1.909406e-01	ci left: 3.165803e-03	ci right 3.841875e-03	k: 419	n:120000
Cons ci ratio: 2.274885e-02	ci left: 1.960970e-01	ci right 2.006176e-01	k: 23802	n:120000
KS ci ratio: 2.335727e-01	ci left: 2.068272e-03	ci right 2.622883e-03	k: 280	n:120000
FBXW7   120000 perm   37 sec   (3247 perm/sec)   p_kst 2.333333e-03   p_cons 1.983500e-01   p_joint 3.491667e-03

Joint ci ratio: 1.273927e-01	ci left: 6.769926e-03	ci right 7.698412e-03	k: 939	n:130000
Cons ci ratio: 2.185617e-02	ci left: 1.961891e-01	ci right 2.005321e-01	k: 25786	n:130000
KS ci ratio: 2.327652e-01	ci left: 1.923643e-03	ci right 2.437429e-03	k: 282	n:130000
FBXW7   130000 perm   41 sec   (3203 perm/sec)   p_kst 2.169231e-03   p_cons 1.983538e-01   p_joint 7.223077e-03

Joint ci ratio: 1.251668e-01	ci left: 6.521492e-03	ci right 7.399115e-03	k: 973	n:140000
Cons ci ratio: 2.103922e-02	ci left: 1.965983e-01	ci right 2.007856e-01	k: 27816	n:140000
KS ci ratio: 2.257012e-01	ci left: 1.907427e-03	ci right 2.399271e-03	k: 300	n:140000
FBXW7   140000 perm   44 sec   (3160 perm/sec)   p_kst 2.142857e-03   p_cons 1.986857e-01   p_joint 6.950000e-03

Joint ci ratio: 1.307127e-01	ci left: 5.570273e-03	ci right 6.355675e-03	k: 893	n:150000
Cons ci ratio: 2.034794e-02	ci left: 1.963246e-01	ci right 2.003671e-01	k: 29751	n:150000
KS ci ratio: 2.175417e-01	ci left: 1.925091e-03	ci right 2.401147e-03	k: 323	n:150000
FBXW7   150000 perm   48 sec   (3113 perm/sec)   p_kst 2.153333e-03   p_cons 1.983400e-01   p_joint 5.953333e-03

Joint ci ratio: 1.303711e-01	ci left: 5.252304e-03	ci right 5.990784e-03	k: 898	n:160000
Cons ci ratio: 1.968884e-02	ci left: 1.965977e-01	ci right 2.005132e-01	k: 31768	n:160000
KS ci ratio: 2.126788e-01	ci left: 1.893469e-03	ci right 2.349873e-03	k: 338	n:160000
FBXW7   160000 perm   52 sec   (3075 perm/sec)   p_kst 2.112500e-03   p_cons 1.985500e-01   p_joint 5.612500e-03

Joint ci ratio: 1.306854e-01	ci left: 4.920528e-03	ci right 5.614155e-03	k: 894	n:170000
Cons ci ratio: 1.909659e-02	ci left: 1.967292e-01	ci right 2.005281e-01	k: 33766	n:170000
KS ci ratio: 2.093164e-01	ci left: 1.843370e-03	ci right 2.279772e-03	k: 349	n:170000
FBXW7   170000 perm   56 sec   (3036 perm/sec)   p_kst 2.052941e-03   p_cons 1.986235e-01   p_joint 5.258824e-03

Joint ci ratio: 1.314447e-01	ci left: 4.593380e-03	ci right 5.244944e-03	k: 884	n:180000
Cons ci ratio: 1.855865e-02	ci left: 1.967812e-01	ci right 2.004729e-01	k: 35752	n:180000
KS ci ratio: 2.027589e-01	ci left: 1.862149e-03	ci right 2.287476e-03	k: 372	n:180000
FBXW7   180000 perm   60 sec   (2999 perm/sec)   p_kst 2.066667e-03   p_cons 1.986222e-01   p_joint 4.911111e-03

Joint ci ratio: 1.302838e-01	ci left: 4.433053e-03	ci right 5.055890e-03	k: 900	n:190000
Cons ci ratio: 1.806942e-02	ci left: 1.967295e-01	ci right 2.003219e-01	k: 37719	n:190000
KS ci ratio: 2.003624e-01	ci left: 1.809114e-03	ci right 2.216846e-03	k: 381	n:190000
FBXW7   190000 perm   64 sec   (2962 perm/sec)   p_kst 2.005263e-03   p_cons 1.985211e-01   p_joint 4.736842e-03

Joint ci ratio: 1.294363e-01	ci left: 4.269427e-03	ci right 4.865072e-03	k: 912	n:200000
Cons ci ratio: 1.763525e-02	ci left: 1.963551e-01	ci right 1.998536e-01	k: 39620	n:200000
KS ci ratio: 1.943483e-01	ci left: 1.832732e-03	ci right 2.231922e-03	k: 405	n:200000
FBXW7   200000 perm   68 sec   (2924 perm/sec)   p_kst 2.025000e-03   p_cons 1.981000e-01   p_joint 4.560000e-03

Joint ci ratio: 1.271625e-01	ci left: 4.218213e-03	ci right 4.795595e-03	k: 945	n:210000
Cons ci ratio: 1.721154e-02	ci left: 1.963734e-01	ci right 1.997873e-01	k: 41596	n:210000
KS ci ratio: 1.890655e-01	ci left: 1.849728e-03	ci right 2.240411e-03	k: 428	n:210000
FBXW7   210000 perm   73 sec   (2889 perm/sec)   p_kst 2.038095e-03   p_cons 1.980762e-01   p_joint 4.500000e-03

Joint ci ratio: 1.273786e-01	ci left: 4.013247e-03	ci right 4.563576e-03	k: 942	n:220000
Cons ci ratio: 1.683577e-02	ci left: 1.960375e-01	ci right 1.993705e-01	k: 43494	n:220000
KS ci ratio: 1.850135e-01	ci left: 1.847970e-03	ci right 2.228978e-03	k: 447	n:220000
FBXW7   220000 perm   77 sec   (2852 perm/sec)   p_kst 2.031818e-03   p_cons 1.977000e-01   p_joint 4.281818e-03

Joint ci ratio: 1.331101e-01	ci left: 3.506404e-03	ci right 4.010577e-03	k: 863	n:230000
Cons ci ratio: 1.646211e-02	ci left: 1.961434e-01	ci right 1.994034e-01	k: 45487	n:230000
KS ci ratio: 1.812113e-01	ci left: 1.846445e-03	ci right 2.218457e-03	k: 466	n:230000
FBXW7   230000 perm   82 sec   (2819 perm/sec)   p_kst 2.026087e-03   p_cons 1.977696e-01   p_joint 3.752174e-03

Joint ci ratio: 1.089754e-01	ci left: 5.070164e-03	ci right 5.658545e-03	k: 1286	n:240000
Cons ci ratio: 1.612646e-02	ci left: 1.959628e-01	ci right 1.991528e-01	k: 47413	n:240000
KS ci ratio: 1.765456e-01	ci left: 1.869015e-03	ci right 2.234844e-03	k: 491	n:240000
FBXW7   240000 perm   86 sec   (2783 perm/sec)   p_kst 2.045833e-03   p_cons 1.975542e-01   p_joint 5.358333e-03

Joint ci ratio: 1.086061e-01	ci left: 4.902355e-03	ci right 5.469210e-03	k: 1295	n:250000
Cons ci ratio: 1.580175e-02	ci left: 1.959728e-01	ci right 1.990982e-01	k: 49383	n:250000
KS ci ratio: 1.722227e-01	ci left: 1.889892e-03	ci right 2.249808e-03	k: 516	n:250000
FBXW7   250000 perm   91 sec   (2751 perm/sec)   p_kst 2.064000e-03   p_cons 1.975320e-01   p_joint 5.180000e-03

Joint ci ratio: 1.169321e-01	ci left: 4.052103e-03	ci right 4.559044e-03	k: 1118	n:260000
Cons ci ratio: 1.549440e-02	ci left: 1.960134e-01	ci right 1.990780e-01	k: 51361	n:260000
KS ci ratio: 1.680472e-01	ci left: 1.912948e-03	ci right 2.267529e-03	k: 542	n:260000
FBXW7   260000 perm   96 sec   (2714 perm/sec)   p_kst 2.084615e-03   p_cons 1.975423e-01   p_joint 4.300000e-03

Joint ci ratio: 1.166279e-01	ci left: 3.923583e-03	ci right 4.413080e-03	k: 1124	n:270000
Cons ci ratio: 1.519614e-02	ci left: 1.962213e-01	ci right 1.992296e-01	k: 53385	n:270000
KS ci ratio: 1.648890e-01	ci left: 1.916636e-03	ci right 2.264561e-03	k: 563	n:270000
FBXW7   270000 perm   101 sec   (2681 perm/sec)   p_kst 2.085185e-03   p_cons 1.977222e-01   p_joint 4.162963e-03

Joint ci ratio: 1.152059e-01	ci left: 3.880551e-03	ci right 4.358375e-03	k: 1152	n:280000
Cons ci ratio: 1.491279e-02	ci left: 1.964505e-01	ci right 1.994057e-01	k: 55419	n:280000
KS ci ratio: 1.626002e-01	ci left: 1.902985e-03	ci right 2.243168e-03	k: 579	n:280000
FBXW7   280000 perm   106 sec   (2649 perm/sec)   p_kst 2.067857e-03   p_cons 1.979250e-01   p_joint 4.114286e-03

Joint ci ratio: 1.136415e-01	ci left: 3.853922e-03	ci right 4.321591e-03	k: 1184	n:290000
Cons ci ratio: 1.464408e-02	ci left: 1.966782e-01	ci right 1.995830e-01	k: 57457	n:290000
KS ci ratio: 1.606745e-01	ci left: 1.883686e-03	ci right 2.216046e-03	k: 593	n:290000
FBXW7   290000 perm   111 sec   (2617 perm/sec)   p_kst 2.044828e-03   p_cons 1.981276e-01   p_joint 4.082759e-03

Joint ci ratio: 1.115881e-01	ci left: 3.867995e-03	ci right 4.328333e-03	k: 1228	n:300000
Cons ci ratio: 1.440706e-02	ci left: 1.965022e-01	ci right 1.993570e-01	k: 59378	n:300000
KS ci ratio: 1.581652e-01	ci left: 1.881703e-03	ci right 2.208036e-03	k: 612	n:300000
FBXW7   300000 perm   116 sec   (2587 perm/sec)   p_kst 2.040000e-03   p_cons 1.979267e-01   p_joint 4.093333e-03

Joint ci ratio: 1.102087e-01	ci left: 3.840444e-03	ci right 4.291485e-03	k: 1259	n:310000
Cons ci ratio: 1.418234e-02	ci left: 1.963121e-01	ci right 1.991193e-01	k: 61291	n:310000
KS ci ratio: 1.554008e-01	ci left: 1.889187e-03	ci right 2.210558e-03	k: 634	n:310000
FBXW7   310000 perm   121 sec   (2559 perm/sec)   p_kst 2.045161e-03   p_cons 1.977129e-01   p_joint 4.061290e-03

Joint ci ratio: 1.124320e-01	ci left: 3.571540e-03	ci right 4.000023e-03	k: 1210	n:320000
Cons ci ratio: 1.396120e-02	ci left: 1.962839e-01	ci right 1.990466e-01	k: 63252	n:320000
KS ci ratio: 1.534803e-01	ci left: 1.878217e-03	ci right 2.193410e-03	k: 650	n:320000
FBXW7   320000 perm   126 sec   (2530 perm/sec)   p_kst 2.031250e-03   p_cons 1.976625e-01   p_joint 3.781250e-03

Joint ci ratio: 1.139597e-01	ci left: 3.369068e-03	ci right 3.779120e-03	k: 1178	n:330000
Cons ci ratio: 1.375155e-02	ci left: 1.962244e-01	ci right 1.989445e-01	k: 65202	n:330000
KS ci ratio: 1.514020e-01	ci left: 1.873766e-03	ci right 2.183568e-03	k: 668	n:330000
FBXW7   330000 perm   132 sec   (2503 perm/sec)   p_kst 2.024242e-03   p_cons 1.975818e-01   p_joint 3.569697e-03

Joint ci ratio: 1.143067e-01	ci left: 3.249966e-03	ci right 3.646807e-03	k: 1171	n:340000
Cons ci ratio: 1.355508e-02	ci left: 1.960749e-01	ci right 1.987538e-01	k: 67120	n:340000
KS ci ratio: 1.496243e-01	ci left: 1.863941e-03	ci right 2.168176e-03	k: 684	n:340000
FBXW7   340000 perm   137 sec   (2475 perm/sec)   p_kst 2.011765e-03   p_cons 1.974118e-01   p_joint 3.444118e-03

Joint ci ratio: 1.130609e-01	ci left: 3.229281e-03	ci right 3.619012e-03	k: 1197	n:350000
Cons ci ratio: 1.335548e-02	ci left: 1.962021e-01	ci right 1.988429e-01	k: 69132	n:350000
KS ci ratio: 1.474868e-01	ci left: 1.865704e-03	ci right 2.165494e-03	k: 704	n:350000
FBXW7   350000 perm   143 sec   (2449 perm/sec)   p_kst 2.011429e-03   p_cons 1.975200e-01   p_joint 3.420000e-03

Joint ci ratio: 1.166369e-01	ci left: 2.945297e-03	ci right 3.312773e-03	k: 1125	n:360000
Cons ci ratio: 1.316790e-02	ci left: 1.962394e-01	ci right 1.988433e-01	k: 71114	n:360000
KS ci ratio: 1.458420e-01	ci left: 1.856692e-03	ci right 2.151416e-03	k: 720	n:360000
FBXW7   360000 perm   149 sec   (2424 perm/sec)   p_kst 2.000000e-03   p_cons 1.975389e-01   p_joint 3.125000e-03

Joint ci ratio: 1.163314e-01	ci left: 2.881433e-03	ci right 3.239933e-03	k: 1131	n:370000
Cons ci ratio: 1.298967e-02	ci left: 1.962344e-01	ci right 1.988028e-01	k: 73081	n:370000
KS ci ratio: 1.438603e-01	ci left: 1.858606e-03	ci right 2.149281e-03	k: 740	n:370000
FBXW7   370000 perm   154 sec   (2399 perm/sec)   p_kst 2.000000e-03   p_cons 1.975162e-01   p_joint 3.056757e-03

Joint ci ratio: 1.155201e-01	ci left: 2.846487e-03	ci right 3.198001e-03	k: 1147	n:380000
Cons ci ratio: 1.281901e-02	ci left: 1.962168e-01	ci right 1.987509e-01	k: 75043	n:380000
KS ci ratio: 1.421446e-01	ci left: 1.855369e-03	ci right 2.141784e-03	k: 758	n:380000
FBXW7   380000 perm   160 sec   (2375 perm/sec)   p_kst 1.994737e-03   p_cons 1.974816e-01   p_joint 3.018421e-03

Joint ci ratio: 1.136532e-01	ci left: 2.868145e-03	ci right 3.216226e-03	k: 1185	n:390000
Cons ci ratio: 1.265737e-02	ci left: 1.961390e-01	ci right 1.986399e-01	k: 76981	n:390000
KS ci ratio: 1.395917e-01	ci left: 1.877062e-03	ci right 2.161188e-03	k: 786	n:390000
FBXW7   390000 perm   166 sec   (2349 perm/sec)   p_kst 2.015385e-03   p_cons 1.973872e-01   p_joint 3.038462e-03

Joint ci ratio: 1.150275e-01	ci left: 2.728432e-03	ci right 3.063833e-03	k: 1157	n:400000
Cons ci ratio: 1.250337e-02	ci left: 1.960228e-01	ci right 1.984916e-01	k: 78902	n:400000
KS ci ratio: 1.381947e-01	ci left: 1.868744e-03	ci right 2.148548e-03	k: 802	n:400000
FBXW7   400000 perm   172 sec   (2325 perm/sec)   p_kst 2.005000e-03   p_cons 1.972550e-01   p_joint 2.892500e-03

Joint ci ratio: 1.136617e-01	ci left: 2.728225e-03	ci right 3.059351e-03	k: 1185	n:410000
Cons ci ratio: 1.235020e-02	ci left: 1.960317e-01	ci right 1.984702e-01	k: 80872	n:410000
KS ci ratio: 1.365052e-01	ci left: 1.870270e-03	ci right 2.146600e-03	k: 822	n:410000
FBXW7   410000 perm   178 sec   (2302 perm/sec)   p_kst 2.004878e-03   p_cons 1.972488e-01   p_joint 2.890244e-03

Joint ci ratio: 1.273064e-01	ci left: 2.108960e-03	ci right 2.397975e-03	k: 945	n:420000
Cons ci ratio: 1.220683e-02	ci left: 1.959287e-01	ci right 1.983374e-01	k: 82795	n:420000
KS ci ratio: 1.343978e-01	ci left: 1.885548e-03	ci right 2.159491e-03	k: 848	n:420000
FBXW7   420000 perm   184 sec   (2277 perm/sec)   p_kst 2.019048e-03   p_cons 1.971310e-01   p_joint 2.250000e-03

Joint ci ratio: 1.265744e-01	ci left: 2.084682e-03	ci right 2.368604e-03	k: 956	n:430000
Cons ci ratio: 1.206648e-02	ci left: 1.958794e-01	ci right 1.982596e-01	k: 84739	n:430000
KS ci ratio: 1.330727e-01	ci left: 1.879909e-03	ci right 2.150127e-03	k: 865	n:430000
FBXW7   430000 perm   191 sec   (2253 perm/sec)   p_kst 2.011628e-03   p_cons 1.970674e-01   p_joint 2.223256e-03

Joint ci ratio: 1.271783e-01	ci left: 2.017493e-03	ci right 2.293674e-03	k: 947	n:440000
Cons ci ratio: 1.192820e-02	ci left: 1.959028e-01	ci right 1.982558e-01	k: 86714	n:440000
KS ci ratio: 1.314136e-01	ci left: 1.885530e-03	ci right 2.152913e-03	k: 887	n:440000
FBXW7   440000 perm   197 sec   (2230 perm/sec)   p_kst 2.015909e-03   p_cons 1.970773e-01   p_joint 2.152273e-03

Joint ci ratio: 1.259230e-01	ci left: 2.013545e-03	ci right 2.286262e-03	k: 966	n:450000
Cons ci ratio: 1.179515e-02	ci left: 1.959097e-01	ci right 1.982364e-01	k: 88682	n:450000
KS ci ratio: 1.303183e-01	ci left: 1.875871e-03	ci right 2.139496e-03	k: 902	n:450000
FBXW7   450000 perm   204 sec   (2208 perm/sec)   p_kst 2.004444e-03   p_cons 1.970711e-01   p_joint 2.146667e-03

Joint ci ratio: 1.272516e-01	ci left: 1.927665e-03	ci right 2.191713e-03	k: 946	n:460000
Cons ci ratio: 1.166814e-02	ci left: 1.958710e-01	ci right 1.981720e-01	k: 90629	n:460000
KS ci ratio: 1.290389e-01	ci left: 1.872952e-03	ci right 2.133384e-03	k: 920	n:460000
FBXW7   460000 perm   210 sec   (2188 perm/sec)   p_kst 2.000000e-03   p_cons 1.970196e-01   p_joint 2.056522e-03

Joint ci ratio: 1.261906e-01	ci left: 1.919614e-03	ci right 2.180202e-03	k: 962	n:470000
Cons ci ratio: 1.154313e-02	ci left: 1.958892e-01	ci right 1.981656e-01	k: 92602	n:470000
KS ci ratio: 1.279330e-01	ci left: 1.866050e-03	ci right 2.123130e-03	k: 936	n:470000
FBXW7   470000 perm   217 sec   (2168 perm/sec)   p_kst 1.991489e-03   p_cons 1.970255e-01   p_joint 2.046809e-03

Joint ci ratio: 1.252199e-01	ci left: 1.909889e-03	ci right 2.167015e-03	k: 977	n:480000
Cons ci ratio: 1.142461e-02	ci left: 1.958361e-01	ci right 1.980884e-01	k: 94541	n:480000
KS ci ratio: 1.269217e-01	ci left: 1.857427e-03	ci right 2.111144e-03	k: 951	n:480000
FBXW7   480000 perm   223 sec   (2149 perm/sec)   p_kst 1.981250e-03   p_cons 1.969604e-01   p_joint 2.035417e-03

Joint ci ratio: 1.237726e-01	ci left: 1.916389e-03	ci right 2.171189e-03	k: 1000	n:490000
Cons ci ratio: 1.130390e-02	ci left: 1.959462e-01	ci right 1.981758e-01	k: 96559	n:490000
KS ci ratio: 1.256740e-01	ci left: 1.857071e-03	ci right 2.108060e-03	k: 970	n:490000
FBXW7   490000 perm   230 sec   (2129 perm/sec)   p_kst 1.979592e-03   p_cons 1.970592e-01   p_joint 2.040816e-03

Joint ci ratio: 1.125555e-01	ci left: 2.283757e-03	ci right 2.558060e-03	k: 1209	n:500000
Cons ci ratio: 1.119097e-02	ci left: 1.959382e-01	ci right 1.981453e-01	k: 98520	n:500000
KS ci ratio: 1.243365e-01	ci left: 1.860616e-03	ci right 2.109211e-03	k: 991	n:500000
FBXW7   500000 perm   237 sec   (2111 perm/sec)   p_kst 1.982000e-03   p_cons 1.970400e-01   p_joint 2.418000e-03

Joint ci ratio: 9.611392e-02	ci left: 3.094684e-03	ci right 3.409040e-03	k: 1657	n:510000
Cons ci ratio: 1.108157e-02	ci left: 1.959248e-01	ci right 1.981100e-01	k: 100478	n:510000
KS ci ratio: 1.234075e-01	ci left: 1.852634e-03	ci right 2.098177e-03	k: 1006	n:510000
FBXW7   510000 perm   244 sec   (2092 perm/sec)   p_kst 1.972549e-03   p_cons 1.970157e-01   p_joint 3.249020e-03

Joint ci ratio: 1.025173e-01	ci left: 2.660068e-03	ci right 2.949362e-03	k: 1457	n:520000
Cons ci ratio: 1.097544e-02	ci left: 1.959082e-01	ci right 1.980721e-01	k: 102434	n:520000
KS ci ratio: 1.219622e-01	ci left: 1.861744e-03	ci right 2.105397e-03	k: 1030	n:520000
FBXW7   520000 perm   251 sec   (2074 perm/sec)   p_kst 1.980769e-03   p_cons 1.969885e-01   p_joint 2.801923e-03

Joint ci ratio: 1.013419e-01	ci left: 2.672395e-03	ci right 2.959498e-03	k: 1491	n:530000
Cons ci ratio: 1.087315e-02	ci left: 1.958678e-01	ci right 1.980110e-01	k: 104377	n:530000
KS ci ratio: 1.205665e-01	ci left: 1.870527e-03	ci right 2.112328e-03	k: 1054	n:530000
FBXW7   530000 perm   258 sec   (2055 perm/sec)   p_kst 1.988679e-03   p_cons 1.969377e-01   p_joint 2.813208e-03

Joint ci ratio: 1.004705e-01	ci left: 2.669839e-03	ci right 2.954056e-03	k: 1517	n:540000
Cons ci ratio: 1.077096e-02	ci left: 1.959085e-01	ci right 1.980318e-01	k: 106363	n:540000
KS ci ratio: 1.195512e-01	ci left: 1.868219e-03	ci right 2.107544e-03	k: 1072	n:540000
FBXW7   540000 perm   265 sec   (2037 perm/sec)   p_kst 1.985185e-03   p_cons 1.969685e-01   p_joint 2.809259e-03

Joint ci ratio: 9.952424e-02	ci left: 2.672705e-03	ci right 2.954391e-03	k: 1546	n:550000
Cons ci ratio: 1.067196e-02	ci left: 1.959369e-01	ci right 1.980409e-01	k: 108343	n:550000
KS ci ratio: 1.183981e-01	ci left: 1.871298e-03	ci right 2.108543e-03	k: 1093	n:550000
FBXW7   550000 perm   272 sec   (2020 perm/sec)   p_kst 1.987273e-03   p_cons 1.969873e-01   p_joint 2.810909e-03

Joint ci ratio: 9.860424e-02	ci left: 2.675481e-03	ci right 2.954702e-03	k: 1575	n:560000
Cons ci ratio: 1.057296e-02	ci left: 1.960445e-01	ci right 1.981300e-01	k: 110368	n:560000
KS ci ratio: 1.170151e-01	ci left: 1.882944e-03	ci right 2.118684e-03	k: 1119	n:560000
FBXW7   560000 perm   280 sec   (2003 perm/sec)   p_kst 1.998214e-03   p_cons 1.970857e-01   p_joint 2.812500e-03

Joint ci ratio: 9.789296e-02	ci left: 2.667901e-03	ci right 2.944208e-03	k: 1598	n:570000
Cons ci ratio: 1.047782e-02	ci left: 1.961135e-01	ci right 1.981808e-01	k: 112373	n:570000
KS ci ratio: 1.163941e-01	ci left: 1.870347e-03	ci right 2.103182e-03	k: 1131	n:570000
FBXW7   570000 perm   287 sec   (1987 perm/sec)   p_kst 1.984211e-03   p_cons 1.971456e-01   p_joint 2.803509e-03

Joint ci ratio: 9.701706e-02	ci left: 2.670685e-03	ci right 2.944664e-03	k: 1627	n:580000
Cons ci ratio: 1.038894e-02	ci left: 1.960665e-01	ci right 1.981158e-01	k: 114312	n:580000
KS ci ratio: 1.151292e-01	ci left: 1.879956e-03	ci right 2.111271e-03	k: 1156	n:580000
FBXW7   580000 perm   294 sec   (1970 perm/sec)   p_kst 1.993103e-03   p_cons 1.970897e-01   p_joint 2.805172e-03

Joint ci ratio: 9.908524e-02	ci left: 2.514634e-03	ci right 2.778423e-03	k: 1560	n:590000
Cons ci ratio: 1.030184e-02	ci left: 1.960348e-01	ci right 1.980665e-01	k: 116259	n:590000
KS ci ratio: 1.129511e-01	ci left: 1.922190e-03	ci right 2.153930e-03	k: 1201	n:590000
FBXW7   590000 perm   302 sec   (1953 perm/sec)   p_kst 2.035593e-03   p_cons 1.970492e-01   p_joint 2.644068e-03

Joint ci ratio: 1.038661e-01	ci left: 2.245292e-03	ci right 2.492885e-03	k: 1420	n:600000
Cons ci ratio: 1.021469e-02	ci left: 1.960724e-01	ci right 1.980872e-01	k: 118247	n:600000
KS ci ratio: 1.118398e-01	ci left: 1.929029e-03	ci right 2.159154e-03	k: 1225	n:600000
FBXW7   600000 perm   310 sec   (1937 perm/sec)   p_kst 2.041667e-03   p_cons 1.970783e-01   p_joint 2.366667e-03

Joint ci ratio: 1.029642e-01	ci left: 2.248408e-03	ci right 2.494061e-03	k: 1445	n:610000
Cons ci ratio: 1.012777e-02	ci left: 1.961694e-01	ci right 1.981679e-01	k: 120272	n:610000
KS ci ratio: 1.109386e-01	ci left: 1.929279e-03	ci right 2.157459e-03	k: 1245	n:610000
FBXW7   610000 perm   318 sec   (1921 perm/sec)   p_kst 2.040984e-03   p_cons 1.971672e-01   p_joint 2.368852e-03

Joint ci ratio: 1.021899e-01	ci left: 2.246717e-03	ci right 2.490228e-03	k: 1467	n:620000
Cons ci ratio: 1.004764e-02	ci left: 1.961185e-01	ci right 1.981005e-01	k: 122207	n:620000
KS ci ratio: 1.101024e-01	ci left: 1.927960e-03	ci right 2.154153e-03	k: 1264	n:620000
FBXW7   620000 perm   325 sec   (1905 perm/sec)   p_kst 2.038710e-03   p_cons 1.971081e-01   p_joint 2.366129e-03

Joint ci ratio: 1.033990e-01	ci left: 2.158469e-03	ci right 2.395352e-03	k: 1433	n:630000
Cons ci ratio: 9.969335e-03	ci left: 1.960708e-01	ci right 1.980368e-01	k: 124143	n:630000
KS ci ratio: 1.093703e-01	ci left: 1.923601e-03	ci right 2.147685e-03	k: 1281	n:630000
FBXW7   630000 perm   333 sec   (1890 perm/sec)   p_kst 2.033333e-03   p_cons 1.970524e-01   p_joint 2.274603e-03

Joint ci ratio: 1.024036e-01	ci left: 2.167367e-03	ci right 2.402799e-03	k: 1461	n:640000
Cons ci ratio: 9.892391e-03	ci left: 1.960386e-01	ci right 1.979891e-01	k: 126088	n:640000
KS ci ratio: 1.083604e-01	ci left: 1.930024e-03	ci right 2.152647e-03	k: 1305	n:640000
FBXW7   640000 perm   341 sec   (1875 perm/sec)   p_kst 2.039063e-03   p_cons 1.970125e-01   p_joint 2.282813e-03

Joint ci ratio: 1.029717e-01	ci left: 2.110037e-03	ci right 2.340590e-03	k: 1445	n:650000
Cons ci ratio: 9.815864e-03	ci left: 1.960506e-01	ci right 1.979860e-01	k: 128061	n:650000
KS ci ratio: 1.075401e-01	ci left: 1.930269e-03	ci right 2.151129e-03	k: 1325	n:650000
FBXW7   650000 perm   349 sec   (1860 perm/sec)   p_kst 2.038462e-03   p_cons 1.970169e-01   p_joint 2.223077e-03

Joint ci ratio: 1.026892e-01	ci left: 2.089875e-03	ci right 2.317560e-03	k: 1453	n:660000
Cons ci ratio: 9.740060e-03	ci left: 1.960955e-01	ci right 1.980163e-01	k: 130056	n:660000
KS ci ratio: 1.069774e-01	ci left: 1.921665e-03	ci right 2.140318e-03	k: 1339	n:660000
FBXW7   660000 perm   358 sec   (1845 perm/sec)   p_kst 2.028788e-03   p_cons 1.970545e-01   p_joint 2.201515e-03

Joint ci ratio: 1.018519e-01	ci left: 2.093587e-03	ci right 2.319706e-03	k: 1477	n:670000
Cons ci ratio: 9.669771e-03	ci left: 1.960154e-01	ci right 1.979215e-01	k: 131968	n:670000
KS ci ratio: 1.061098e-01	ci left: 1.924945e-03	ci right 2.142083e-03	k: 1361	n:670000
FBXW7   670000 perm   366 sec   (1831 perm/sec)   p_kst 2.031343e-03   p_cons 1.969672e-01   p_joint 2.204478e-03

Joint ci ratio: 1.011360e-01	ci left: 2.092898e-03	ci right 2.317259e-03	k: 1498	n:680000
Cons ci ratio: 9.595315e-03	ci left: 1.961242e-01	ci right 1.980166e-01	k: 134007	n:680000
KS ci ratio: 1.056460e-01	ci left: 1.913816e-03	ci right 2.128697e-03	k: 1373	n:680000
FBXW7   680000 perm   374 sec   (1816 perm/sec)   p_kst 2.019118e-03   p_cons 1.970691e-01   p_joint 2.202941e-03

Joint ci ratio: 1.006343e-01	ci left: 2.083756e-03	ci right 2.305964e-03	k: 1513	n:690000
Cons ci ratio: 9.524688e-03	ci left: 1.961590e-01	ci right 1.980377e-01	k: 135997	n:690000
KS ci ratio: 1.051124e-01	ci left: 1.905834e-03	ci right 2.118671e-03	k: 1387	n:690000
FBXW7   690000 perm   383 sec   (1802 perm/sec)   p_kst 2.010145e-03   p_cons 1.970971e-01   p_joint 2.192754e-03

Joint ci ratio: 9.978084e-02	ci left: 2.090200e-03	ci right 2.311094e-03	k: 1539	n:700000
Cons ci ratio: 9.454617e-03	ci left: 1.962257e-01	ci right 1.980911e-01	k: 138010	n:700000
KS ci ratio: 1.042519e-01	ci left: 1.910605e-03	ci right 2.122121e-03	k: 1410	n:700000
FBXW7   700000 perm   392 sec   (1788 perm/sec)   p_kst 2.014286e-03   p_cons 1.971571e-01   p_joint 2.198571e-03

Joint ci ratio: 9.043303e-02	ci left: 2.520045e-03	ci right 2.760098e-03	k: 1873	n:710000
Cons ci ratio: 9.388074e-03	ci left: 1.962230e-01	ci right 1.980752e-01	k: 139975	n:710000
KS ci ratio: 1.034484e-01	ci left: 1.913876e-03	ci right 2.124023e-03	k: 1432	n:710000
FBXW7   710000 perm   400 sec   (1774 perm/sec)   p_kst 2.016901e-03   p_cons 1.971479e-01   p_joint 2.638028e-03

Joint ci ratio: 8.988334e-02	ci left: 2.516268e-03	ci right 2.754428e-03	k: 1896	n:720000
Cons ci ratio: 9.322508e-03	ci left: 1.962343e-01	ci right 1.980737e-01	k: 141950	n:720000
KS ci ratio: 1.028049e-01	ci left: 1.911650e-03	ci right 2.120167e-03	k: 1450	n:720000
FBXW7   720000 perm   409 sec   (1761 perm/sec)   p_kst 2.013889e-03   p_cons 1.971528e-01   p_joint 2.633333e-03

Joint ci ratio: 8.939026e-02	ci left: 2.509921e-03	ci right 2.746108e-03	k: 1917	n:730000
Cons ci ratio: 9.257896e-03	ci left: 1.962591e-01	ci right 1.980858e-01	k: 143935	n:730000
KS ci ratio: 1.021733e-01	ci left: 1.909488e-03	ci right 2.116413e-03	k: 1468	n:730000
FBXW7   730000 perm   418 sec   (1748 perm/sec)   p_kst 2.010959e-03   p_cons 1.971712e-01   p_joint 2.626027e-03

Joint ci ratio: 9.152138e-02	ci left: 2.359765e-03	ci right 2.587400e-03	k: 1829	n:740000
Cons ci ratio: 9.195041e-03	ci left: 1.962683e-01	ci right 1.980827e-01	k: 145909	n:740000
KS ci ratio: 1.016560e-01	ci left: 1.903438e-03	ci right 2.108600e-03	k: 1483	n:740000
FBXW7   740000 perm   427 sec   (1735 perm/sec)   p_kst 2.004054e-03   p_cons 1.971743e-01   p_joint 2.471622e-03

Joint ci ratio: 9.105029e-02	ci left: 2.353056e-03	ci right 2.578814e-03	k: 1848	n:750000
Cons ci ratio: 9.131526e-03	ci left: 1.963439e-01	ci right 1.981464e-01	k: 147933	n:750000
KS ci ratio: 1.012141e-01	ci left: 1.894952e-03	ci right 2.098259e-03	k: 1496	n:750000
FBXW7   750000 perm   436 sec   (1722 perm/sec)   p_kst 1.994667e-03   p_cons 1.972440e-01   p_joint 2.464000e-03

Joint ci ratio: 9.036842e-02	ci left: 2.358102e-03	ci right 2.582559e-03	k: 1876	n:760000
Cons ci ratio: 9.072512e-03	ci left: 1.963060e-01	ci right 1.980963e-01	k: 149872	n:760000
KS ci ratio: 1.004121e-01	ci left: 1.900801e-03	ci right 2.103025e-03	k: 1520	n:760000
FBXW7   760000 perm   445 sec   (1709 perm/sec)   p_kst 2.000000e-03   p_cons 1.972000e-01   p_joint 2.468421e-03

Joint ci ratio: 9.049077e-02	ci left: 2.321128e-03	ci right 2.542382e-03	k: 1871	n:770000
Cons ci ratio: 9.012299e-03	ci left: 1.963507e-01	ci right 1.981295e-01	k: 151874	n:770000
KS ci ratio: 9.995356e-02	ci left: 1.893841e-03	ci right 2.094350e-03	k: 1534	n:770000
FBXW7   770000 perm   454 sec   (1696 perm/sec)   p_kst 1.992208e-03   p_cons 1.972390e-01   p_joint 2.429870e-03

Outputting figure to mutsig2_images.part000000000064/FBXW7.11_2584_770000_0.0019922_0.19724_0.0024299.png
                gene_name: FBXW7
               theta_stop: 0.100 
                    nperm: 770000 
                     p_ks: 0.0020 
        ci_ks_bounds_left: 0.0019 
       ci_ks_bounds_right: 0.0021 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.0024 
     ci_joint_bounds_left: 0.0023 
    ci_joint_bounds_right: 0.0025 

Current progress: 4 percent done.
FCRL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.485455e-01	ci left: 6.024541e-02	ci right 7.000980e-02	k: 650	n:10000
Cons ci ratio: 5.440970e-02	ci left: 3.323022e-01	ci right 3.509901e-01	k: 3416	n:10000
KS ci ratio: 2.292716e-01	ci left: 2.513779e-02	ci right 3.174074e-02	k: 283	n:10000
FCRL5   10000 perm   2 sec   (4544 perm/sec)   p_kst 2.830000e-02   p_cons 3.416000e-01   p_joint 6.500000e-02

Joint ci ratio: 1.312415e-01	ci left: 3.989122e-02	ci right 4.554270e-02	k: 853	n:20000
Cons ci ratio: 3.932232e-02	ci left: 3.253737e-01	ci right 3.384752e-01	k: 6638	n:20000
KS ci ratio: 1.627139e-01	ci left: 2.590150e-02	ci right 3.053703e-02	k: 563	n:20000
FCRL5   20000 perm   5 sec   (4130 perm/sec)   p_kst 2.815000e-02   p_cons 3.319000e-01   p_joint 4.265000e-02

Joint ci ratio: 8.931561e-02	ci left: 5.763236e-02	ci right 6.305317e-02	k: 1809	n:30000
Cons ci ratio: 3.190372e-02	ci left: 3.293930e-01	ci right 3.401057e-01	k: 10042	n:30000
KS ci ratio: 1.305713e-01	ci left: 2.725927e-02	ci right 3.109930e-02	k: 874	n:30000
FCRL5   30000 perm   8 sec   (3957 perm/sec)   p_kst 2.913333e-02   p_cons 3.347333e-01   p_joint 6.030000e-02

Joint ci ratio: 8.860363e-02	ci left: 4.457934e-02	ci right 4.873680e-02	k: 1865	n:40000
Cons ci ratio: 2.752997e-02	ci left: 3.317195e-01	ci right 3.410043e-01	k: 13454	n:40000
KS ci ratio: 1.136652e-01	ci left: 2.723143e-02	ci right 3.053743e-02	k: 1154	n:40000
FCRL5   40000 perm   10 sec   (3836 perm/sec)   p_kst 2.885000e-02   p_cons 3.363500e-01   p_joint 4.662500e-02

Joint ci ratio: 9.019755e-02	ci left: 3.475582e-02	ci right 3.805829e-02	k: 1819	n:50000
Cons ci ratio: 2.466082e-02	ci left: 3.315405e-01	ci right 3.398386e-01	k: 16784	n:50000
KS ci ratio: 9.992388e-02	ci left: 2.836598e-02	ci right 3.136893e-02	k: 1492	n:50000
FCRL5   50000 perm   13 sec   (3748 perm/sec)   p_kst 2.984000e-02   p_cons 3.356800e-01   p_joint 3.638000e-02

Outputting figure to mutsig2_images.part000000000064/FCRL5.11_3002_50000_0.02984_0.33568_0.03638.png
                gene_name: FCRL5
               theta_stop: 0.100 
                    nperm: 50000 
                     p_ks: 0.030 
        ci_ks_bounds_left: 0.028 
       ci_ks_bounds_right: 0.031 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.036 
     ci_joint_bounds_left: 0.035 
    ci_joint_bounds_right: 0.038 

Current progress: 6 percent done.
FCGBP
Processing conservation and coverage...
61% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.901577e-02	ci left: 6.365358e-01	ci right 6.553791e-01	k: 6460	n:10000
Cons ci ratio: 5.418072e-02	ci left: 3.341893e-01	ci right 3.529019e-01	k: 3435	n:10000
KS ci ratio: 2.893970e-02	ci left: 6.377427e-01	ci right 6.565715e-01	k: 6472	n:10000
FCGBP   10000 perm   5 sec   (1989 perm/sec)   p_kst 6.472000e-01   p_cons 3.435000e-01   p_joint 6.460000e-01

Outputting figure to mutsig2_images.part000000000064/FCGBP.10_16362_10000_0.6472_0.3435_0.646.png
                gene_name: FCGBP
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 8 percent done.
FCAR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.149354e-02	ci left: 9.154367e-01	ci right 9.261167e-01	k: 9209	n:10000
KS ci ratio: 1.724980e-02	ci left: 8.304267e-01	ci right 8.449760e-01	k: 8378	n:10000
FCAR   10000 perm   2 sec   (5445 perm/sec)   p_kst 8.378000e-01   p_cons 9.209000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000064/FCAR.8_955_10000_0.8378_0.9209_1.png
                gene_name: FCAR
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 10 percent done.
FCRL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.383989e-02	ci left: 2.649783e-01	ci right 2.825537e-01	k: 2737	n:10000
Cons ci ratio: 3.520321e-02	ci left: 5.436920e-01	ci right 5.632768e-01	k: 5535	n:10000
KS ci ratio: 1.116124e-01	ci left: 1.036391e-01	ci right 1.159892e-01	k: 1097	n:10000
FCRL1   10000 perm   2 sec   (5036 perm/sec)   p_kst 1.097000e-01   p_cons 5.535000e-01   p_joint 2.737000e-01

Joint ci ratio: 5.528105e-02	ci left: 1.953164e-01	ci right 2.064707e-01	k: 4017	n:20000
Cons ci ratio: 2.467571e-02	ci left: 5.509340e-01	ci right 5.647492e-01	k: 11157	n:20000
KS ci ratio: 7.725382e-02	ci left: 1.096268e-01	ci right 1.184858e-01	k: 2280	n:20000
FCRL1   20000 perm   4 sec   (4552 perm/sec)   p_kst 1.140000e-01   p_cons 5.578500e-01   p_joint 2.008500e-01

Outputting figure to mutsig2_images.part000000000064/FCRL1.8_1400_20000_0.114_0.55785_0.20085.png
                gene_name: FCRL1
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 12 percent done.
FCRL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.577464e-02	ci left: 4.132907e-01	ci right 4.327542e-01	k: 4230	n:10000
Cons ci ratio: 3.603702e-02	ci left: 5.320736e-01	ci right 5.517020e-01	k: 5419	n:10000
KS ci ratio: 6.414628e-02	ci left: 2.630978e-01	ci right 2.806353e-01	k: 2718	n:10000
FCRL2   10000 perm   2 sec   (5010 perm/sec)   p_kst 2.718000e-01   p_cons 5.419000e-01   p_joint 4.230000e-01

Outputting figure to mutsig2_images.part000000000064/FCRL2.8_1575_10000_0.2718_0.5419_0.423.png
                gene_name: FCRL2
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 14 percent done.
FCRL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.812426e-02	ci left: 8.162904e-01	ci right 8.313205e-01	k: 8239	n:10000
Cons ci ratio: 1.538916e-02	ci left: 8.596771e-01	ci right 8.731087e-01	k: 8665	n:10000
KS ci ratio: 2.656849e-02	ci left: 6.759943e-01	ci right 6.942978e-01	k: 6852	n:10000
FCRL3   10000 perm   2 sec   (4948 perm/sec)   p_kst 6.852000e-01   p_cons 8.665000e-01   p_joint 8.239000e-01

Outputting figure to mutsig2_images.part000000000064/FCRL3.8_2261_10000_0.6852_0.8665_0.8239.png
                gene_name: FCRL3
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 16 percent done.
FGD5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.264263e-01	ci left: 8.212963e-02	ci right 9.331191e-02	k: 876	n:10000
Cons ci ratio: 1.840292e-01	ci left: 3.939440e-02	ci right 4.747430e-02	k: 433	n:10000
KS ci ratio: 3.914713e-02	ci left: 4.907512e-01	ci right 5.104484e-01	k: 5006	n:10000
FGD5   10000 perm   2 sec   (4354 perm/sec)   p_kst 5.006000e-01   p_cons 4.330000e-02   p_joint 8.760000e-02

Joint ci ratio: 5.844943e-02	ci left: 1.782062e-01	ci right 1.889859e-01	k: 3671	n:20000
Cons ci ratio: 1.238480e-01	ci left: 4.473862e-02	ci right 5.069376e-02	k: 953	n:20000
KS ci ratio: 2.769711e-02	ci left: 4.933959e-01	ci right 5.073040e-01	k: 10007	n:20000
FGD5   20000 perm   5 sec   (3953 perm/sec)   p_kst 5.003500e-01   p_cons 4.765000e-02   p_joint 1.835500e-01

Joint ci ratio: 7.101487e-02	ci left: 8.891637e-02	ci right 9.549619e-02	k: 2765	n:30000
Cons ci ratio: 1.044213e-01	ci left: 4.251916e-02	ci right 4.723615e-02	k: 1345	n:30000
KS ci ratio: 2.268386e-02	ci left: 4.931591e-01	ci right 5.045078e-01	k: 14965	n:30000
FGD5   30000 perm   8 sec   (3790 perm/sec)   p_kst 4.988333e-01   p_cons 4.483333e-02   p_joint 9.216667e-02

Joint ci ratio: 5.114560e-02	ci left: 1.247653e-01	ci right 1.313388e-01	k: 5121	n:40000
Cons ci ratio: 8.740651e-02	ci left: 4.577863e-02	ci right 4.998732e-02	k: 1914	n:40000
KS ci ratio: 1.960515e-02	ci left: 4.949378e-01	ci right 5.047623e-01	k: 19994	n:40000
FGD5   40000 perm   11 sec   (3696 perm/sec)   p_kst 4.998500e-01   p_cons 4.785000e-02   p_joint 1.280250e-01

Outputting figure to mutsig2_images.part000000000064/FGD5.6_4469_40000_0.49985_0.04785_0.12802.png
                gene_name: FGD5
               theta_stop: 0.087 
                    nperm: 40000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.048 
      ci_cons_bounds_left: 0.046 
     ci_cons_bounds_right: 0.050 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 18 percent done.
FGA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.782292e-02	ci left: 2.418334e-01	ci right 2.589122e-01	k: 2503	n:10000
Cons ci ratio: 9.283885e-02	ci left: 1.442309e-01	ci right 1.583729e-01	k: 1512	n:10000
KS ci ratio: 4.860600e-02	ci left: 3.844050e-01	ci right 4.036568e-01	k: 3940	n:10000
FGA   10000 perm   2 sec   (5068 perm/sec)   p_kst 3.940000e-01   p_cons 1.512000e-01   p_joint 2.503000e-01

Outputting figure to mutsig2_images.part000000000064/FGA.5_2669_10000_0.394_0.1512_0.2503.png
                gene_name: FGA
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 20 percent done.
FCGR3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.958891e-01	ci left: 3.471871e-02	ci right 4.235312e-02	k: 384	n:10000
Cons ci ratio: 3.703552e-02	ci left: 5.184588e-01	ci right 5.381247e-01	k: 5283	n:10000
KS ci ratio: 5.223374e-01	ci left: 4.145961e-03	ci right 7.153063e-03	k: 55	n:10000
FCGR3A   10000 perm   2 sec   (6042 perm/sec)   p_kst 5.500000e-03   p_cons 5.283000e-01   p_joint 3.840000e-02

Joint ci ratio: 1.955271e-01	ci left: 1.777152e-02	ci right 2.166988e-02	k: 393	n:20000
Cons ci ratio: 2.602484e-02	ci left: 5.245051e-01	ci right 5.383858e-01	k: 10629	n:20000
KS ci ratio: 3.710268e-01	ci left: 4.522436e-03	ci right 6.625242e-03	k: 110	n:20000
FCGR3A   20000 perm   4 sec   (5224 perm/sec)   p_kst 5.500000e-03   p_cons 5.314500e-01   p_joint 1.965000e-02

Joint ci ratio: 2.116954e-01	ci left: 1.010318e-02	ci right 1.252618e-02	k: 338	n:30000
Cons ci ratio: 2.109727e-02	ci left: 5.293695e-01	ci right 5.406904e-01	k: 16051	n:30000
KS ci ratio: 3.034031e-01	ci left: 4.694616e-03	ci right 6.403287e-03	k: 165	n:30000
FCGR3A   30000 perm   6 sec   (4993 perm/sec)   p_kst 5.500000e-03   p_cons 5.350333e-01   p_joint 1.126667e-02

Joint ci ratio: 1.957580e-01	ci left: 8.952977e-03	ci right 1.091915e-02	k: 396	n:40000
Cons ci ratio: 1.833656e-02	ci left: 5.283462e-01	ci right 5.381490e-01	k: 21330	n:40000
KS ci ratio: 2.600136e-01	ci left: 4.915659e-03	ci right 6.407485e-03	k: 225	n:40000
FCGR3A   40000 perm   8 sec   (4847 perm/sec)   p_kst 5.625000e-03   p_cons 5.332500e-01   p_joint 9.900000e-03

Joint ci ratio: 1.470134e-01	ci left: 1.298846e-02	ci right 1.506853e-02	k: 700	n:50000
Cons ci ratio: 1.637219e-02	ci left: 5.297357e-01	ci right 5.385003e-01	k: 26706	n:50000
KS ci ratio: 2.370352e-01	ci left: 4.795300e-03	ci right 6.103127e-03	k: 271	n:50000
FCGR3A   50000 perm   11 sec   (4724 perm/sec)   p_kst 5.420000e-03   p_cons 5.341200e-01   p_joint 1.400000e-02

Joint ci ratio: 1.389914e-01	ci left: 1.217329e-02	ci right 1.400759e-02	k: 784	n:60000
Cons ci ratio: 1.549155e-02	ci left: 5.122256e-01	ci right 5.202395e-01	k: 30974	n:60000
KS ci ratio: 2.227869e-01	ci left: 4.561489e-03	ci right 5.720505e-03	k: 307	n:60000
FCGR3A   60000 perm   13 sec   (4598 perm/sec)   p_kst 5.116667e-03   p_cons 5.162333e-01   p_joint 1.306667e-02

Joint ci ratio: 1.664902e-01	ci left: 7.202708e-03	ci right 8.524290e-03	k: 549	n:70000
Cons ci ratio: 1.436392e-02	ci left: 5.117758e-01	ci right 5.191944e-01	k: 36084	n:70000
KS ci ratio: 2.063570e-01	ci left: 4.599324e-03	ci right 5.670900e-03	k: 358	n:70000
FCGR3A   70000 perm   16 sec   (4498 perm/sec)   p_kst 5.114286e-03   p_cons 5.154857e-01   p_joint 7.842857e-03

Joint ci ratio: 1.181962e-01	ci left: 1.276028e-02	ci right 1.437528e-02	k: 1084	n:80000
Cons ci ratio: 1.345841e-02	ci left: 5.111925e-01	ci right 5.181314e-01	k: 41173	n:80000
KS ci ratio: 1.930971e-01	ci left: 4.630063e-03	ci right 5.631342e-03	k: 409	n:80000
FCGR3A   80000 perm   18 sec   (4405 perm/sec)   p_kst 5.112500e-03   p_cons 5.146625e-01   p_joint 1.355000e-02

Joint ci ratio: 9.929473e-02	ci left: 1.617632e-02	ci right 1.787723e-02	k: 1531	n:90000
Cons ci ratio: 1.269682e-02	ci left: 5.110732e-01	ci right 5.176148e-01	k: 46291	n:90000
KS ci ratio: 1.829027e-01	ci left: 4.613265e-03	ci right 5.552404e-03	k: 456	n:90000
FCGR3A   90000 perm   21 sec   (4304 perm/sec)   p_kst 5.066667e-03   p_cons 5.143444e-01   p_joint 1.701111e-02

Joint ci ratio: 1.194769e-01	ci left: 1.001331e-02	ci right 1.129531e-02	k: 1064	n:100000
Cons ci ratio: 1.162762e-02	ci left: 5.288515e-01	ci right 5.350467e-01	k: 53195	n:100000
KS ci ratio: 1.753977e-01	ci left: 4.533989e-03	ci right 5.415100e-03	k: 496	n:100000
FCGR3A   100000 perm   24 sec   (4222 perm/sec)   p_kst 4.960000e-03   p_cons 5.319500e-01   p_joint 1.064000e-02

Joint ci ratio: 1.190846e-01	ci left: 9.173331e-03	ci right 1.034364e-02	k: 1072	n:110000
Cons ci ratio: 1.109714e-02	ci left: 5.285185e-01	ci right 5.344253e-01	k: 58462	n:110000
KS ci ratio: 1.671891e-01	ci left: 4.556878e-03	ci right 5.396821e-03	k: 546	n:110000
FCGR3A   110000 perm   27 sec   (4138 perm/sec)   p_kst 4.963636e-03   p_cons 5.314727e-01   p_joint 9.745455e-03

Joint ci ratio: 1.041907e-01	ci left: 1.105054e-02	ci right 1.227324e-02	k: 1398	n:120000
Cons ci ratio: 1.062609e-02	ci left: 5.285801e-01	ci right 5.342351e-01	k: 63769	n:120000
KS ci ratio: 1.609860e-01	ci left: 4.520753e-03	ci right 5.320128e-03	k: 589	n:120000
FCGR3A   120000 perm   30 sec   (4062 perm/sec)   p_kst 4.908333e-03   p_cons 5.314083e-01   p_joint 1.165000e-02

Joint ci ratio: 9.364390e-02	ci left: 1.267679e-02	ci right 1.392967e-02	k: 1728	n:130000
Cons ci ratio: 1.021618e-02	ci left: 5.283520e-01	ci right 5.337851e-01	k: 69039	n:130000
KS ci ratio: 1.542063e-01	ci left: 4.564629e-03	ci right 5.334631e-03	k: 642	n:130000
FCGR3A   130000 perm   33 sec   (3983 perm/sec)   p_kst 4.938462e-03   p_cons 5.310692e-01   p_joint 1.329231e-02

Joint ci ratio: 9.697924e-02	ci left: 1.097595e-02	ci right 1.210156e-02	k: 1614	n:140000
Cons ci ratio: 9.850595e-03	ci left: 5.281460e-01	ci right 5.333813e-01	k: 74307	n:140000
KS ci ratio: 1.491894e-01	ci left: 4.540938e-03	ci right 5.279797e-03	k: 686	n:140000
FCGR3A   140000 perm   36 sec   (3908 perm/sec)   p_kst 4.900000e-03   p_cons 5.307643e-01   p_joint 1.152857e-02

Joint ci ratio: 9.594179e-02	ci left: 1.047830e-02	ci right 1.154073e-02	k: 1650	n:150000
Cons ci ratio: 9.514120e-03	ci left: 5.283640e-01	ci right 5.334215e-01	k: 79634	n:150000
KS ci ratio: 1.434538e-01	ci left: 4.597887e-03	ci right 5.314788e-03	k: 742	n:150000
FCGR3A   150000 perm   39 sec   (3843 perm/sec)   p_kst 4.946667e-03   p_cons 5.308933e-01   p_joint 1.100000e-02

Joint ci ratio: 9.409287e-02	ci left: 1.022604e-02	ci right 1.124180e-02	k: 1716	n:160000
Cons ci ratio: 9.216976e-03	ci left: 5.281760e-01	ci right 5.330729e-01	k: 84900	n:160000
KS ci ratio: 1.390338e-01	ci left: 4.599918e-03	ci right 5.293207e-03	k: 790	n:160000
FCGR3A   160000 perm   42 sec   (3781 perm/sec)   p_kst 4.937500e-03   p_cons 5.306250e-01   p_joint 1.072500e-02

Joint ci ratio: 9.499302e-02	ci left: 9.446288e-03	ci right 1.039407e-02	k: 1685	n:170000
Cons ci ratio: 8.944874e-03	ci left: 5.280771e-01	ci right 5.328277e-01	k: 90177	n:170000
KS ci ratio: 1.343564e-01	ci left: 4.647491e-03	ci right 5.322502e-03	k: 846	n:170000
FCGR3A   170000 perm   46 sec   (3721 perm/sec)   p_kst 4.976471e-03   p_cons 5.304529e-01   p_joint 9.911765e-03

Joint ci ratio: 9.274197e-02	ci left: 9.371763e-03	ci right 1.028857e-02	k: 1768	n:180000
Cons ci ratio: 8.687289e-03	ci left: 5.284635e-01	ci right 5.330799e-01	k: 95539	n:180000
KS ci ratio: 1.313701e-01	ci left: 4.598754e-03	ci right 5.250681e-03	k: 885	n:180000
FCGR3A   180000 perm   49 sec   (3660 perm/sec)   p_kst 4.916667e-03   p_cons 5.307722e-01   p_joint 9.822222e-03

Joint ci ratio: 9.101662e-02	ci left: 9.228152e-03	ci right 1.011322e-02	k: 1836	n:190000
Cons ci ratio: 8.451366e-03	ci left: 5.287741e-01	ci right 5.332671e-01	k: 100894	n:190000
KS ci ratio: 1.274712e-01	ci left: 4.636823e-03	ci right 5.273163e-03	k: 940	n:190000
FCGR3A   190000 perm   53 sec   (3604 perm/sec)   p_kst 4.947368e-03   p_cons 5.310211e-01   p_joint 9.663158e-03

Joint ci ratio: 8.211913e-02	ci left: 1.080217e-02	ci right 1.173208e-02	k: 2252	n:200000
Cons ci ratio: 8.241529e-03	ci left: 5.285799e-01	ci right 5.329592e-01	k: 106154	n:200000
KS ci ratio: 1.242137e-01	ci left: 4.647113e-03	ci right 5.267369e-03	k: 990	n:200000
FCGR3A   200000 perm   56 sec   (3552 perm/sec)   p_kst 4.950000e-03   p_cons 5.307700e-01   p_joint 1.126000e-02

Joint ci ratio: 8.192117e-02	ci left: 1.034365e-02	ci right 1.123184e-02	k: 2264	n:210000
Cons ci ratio: 8.038737e-03	ci left: 5.288914e-01	ci right 5.331649e-01	k: 111516	n:210000
KS ci ratio: 1.213110e-01	ci left: 4.647375e-03	ci right 5.252129e-03	k: 1038	n:210000
FCGR3A   210000 perm   60 sec   (3501 perm/sec)   p_kst 4.942857e-03   p_cons 5.310286e-01   p_joint 1.078095e-02

Joint ci ratio: 8.357872e-02	ci left: 9.486035e-03	ci right 1.031786e-02	k: 2177	n:220000
Cons ci ratio: 7.854510e-03	ci left: 5.289029e-01	ci right 5.330781e-01	k: 116818	n:220000
KS ci ratio: 1.182751e-01	ci left: 4.674234e-03	ci right 5.266197e-03	k: 1092	n:220000
FCGR3A   220000 perm   64 sec   (3447 perm/sec)   p_kst 4.963636e-03   p_cons 5.309909e-01   p_joint 9.895455e-03

Joint ci ratio: 7.372192e-02	ci left: 1.169558e-02	ci right 1.259504e-02	k: 2792	n:230000
Cons ci ratio: 7.686419e-03	ci left: 5.286536e-01	ci right 5.327370e-01	k: 122060	n:230000
KS ci ratio: 1.152545e-01	ci left: 4.715821e-03	ci right 5.296761e-03	k: 1150	n:230000
FCGR3A   230000 perm   68 sec   (3395 perm/sec)   p_kst 5.000000e-03   p_cons 5.306957e-01   p_joint 1.213913e-02

Joint ci ratio: 6.837942e-02	ci left: 1.304620e-02	ci right 1.397394e-02	k: 3241	n:240000
Cons ci ratio: 7.522127e-03	ci left: 5.288593e-01	ci right 5.328566e-01	k: 127406	n:240000
KS ci ratio: 1.130192e-01	ci left: 4.705522e-03	ci right 5.273201e-03	k: 1196	n:240000
FCGR3A   240000 perm   72 sec   (3344 perm/sec)   p_kst 4.983333e-03   p_cons 5.308583e-01   p_joint 1.350417e-02

Joint ci ratio: 6.821717e-02	ci left: 1.259109e-02	ci right 1.348426e-02	k: 3258	n:250000
Cons ci ratio: 7.363973e-03	ci left: 5.293175e-01	ci right 5.332338e-01	k: 132819	n:250000
KS ci ratio: 1.102867e-01	ci left: 4.750605e-03	ci right 5.308965e-03	k: 1256	n:250000
FCGR3A   250000 perm   76 sec   (3295 perm/sec)   p_kst 5.024000e-03   p_cons 5.312760e-01   p_joint 1.303200e-02

Joint ci ratio: 6.293127e-02	ci left: 1.424089e-02	ci right 1.516997e-02	k: 3822	n:260000
Cons ci ratio: 7.218114e-03	ci left: 5.295527e-01	ci right 5.333927e-01	k: 138183	n:260000
KS ci ratio: 1.101654e-01	ci left: 4.579087e-03	ci right 5.116657e-03	k: 1259	n:260000
FCGR3A   260000 perm   80 sec   (3249 perm/sec)   p_kst 4.842308e-03   p_cons 5.314731e-01   p_joint 1.470000e-02

Joint ci ratio: 6.220195e-02	ci left: 1.404517e-02	ci right 1.495048e-02	k: 3913	n:270000
Cons ci ratio: 7.085489e-03	ci left: 5.294267e-01	ci right 5.331949e-01	k: 143454	n:270000
KS ci ratio: 1.075892e-01	ci left: 4.629271e-03	ci right 5.159220e-03	k: 1320	n:270000
FCGR3A   270000 perm   84 sec   (3204 perm/sec)   p_kst 4.888889e-03   p_cons 5.313111e-01   p_joint 1.449259e-02

Joint ci ratio: 6.309881e-02	ci left: 1.316721e-02	ci right 1.402861e-02	k: 3806	n:280000
Cons ci ratio: 6.955774e-03	ci left: 5.296067e-01	ci right 5.333069e-01	k: 148808	n:280000
KS ci ratio: 1.058030e-01	ci left: 4.620365e-03	ci right 5.139965e-03	k: 1365	n:280000
FCGR3A   280000 perm   89 sec   (3160 perm/sec)   p_kst 4.875000e-03   p_cons 5.314571e-01   p_joint 1.359286e-02

Joint ci ratio: 6.205695e-02	ci left: 1.315104e-02	ci right 1.399666e-02	k: 3935	n:290000
Cons ci ratio: 6.835296e-03	ci left: 5.296025e-01	ci right 5.332383e-01	k: 154112	n:290000
KS ci ratio: 1.042887e-01	ci left: 4.595346e-03	ci right 5.104282e-03	k: 1405	n:290000
FCGR3A   290000 perm   93 sec   (3118 perm/sec)   p_kst 4.844828e-03   p_cons 5.314207e-01   p_joint 1.356897e-02

Joint ci ratio: 6.021477e-02	ci left: 1.351036e-02	ci right 1.435240e-02	k: 4178	n:300000
Cons ci ratio: 6.721544e-03	ci left: 5.295490e-01	ci right 5.331237e-01	k: 159401	n:300000
KS ci ratio: 1.025529e-01	ci left: 4.598029e-03	ci right 5.098277e-03	k: 1453	n:300000
FCGR3A   300000 perm   98 sec   (3077 perm/sec)   p_kst 4.843333e-03   p_cons 5.313367e-01   p_joint 1.392667e-02

Joint ci ratio: 5.875657e-02	ci left: 1.373876e-02	ci right 1.457359e-02	k: 4387	n:310000
Cons ci ratio: 6.618130e-03	ci left: 5.291349e-01	ci right 5.326516e-01	k: 164577	n:310000
KS ci ratio: 1.007327e-01	ci left: 4.616329e-03	ci right 5.109126e-03	k: 1506	n:310000
FCGR3A   310000 perm   102 sec   (3034 perm/sec)   p_kst 4.858065e-03   p_cons 5.308935e-01   p_joint 1.415161e-02

Joint ci ratio: 5.504143e-02	ci left: 1.517347e-02	ci right 1.603534e-02	k: 4992	n:320000
Cons ci ratio: 6.517046e-03	ci left: 5.289222e-01	ci right 5.323835e-01	k: 169809	n:320000
KS ci ratio: 9.897422e-02	ci left: 4.636607e-03	ci right 5.122426e-03	k: 1560	n:320000
FCGR3A   320000 perm   107 sec   (2996 perm/sec)   p_kst 4.875000e-03   p_cons 5.306531e-01   p_joint 1.560000e-02

Outputting figure to mutsig2_images.part000000000064/FCGR3A.4_893_320000_0.004875_0.53065_0.0156.png
                gene_name: FCGR3A
               theta_stop: 0.099 
                    nperm: 320000 
                     p_ks: 0.0049 
        ci_ks_bounds_left: 0.0046 
       ci_ks_bounds_right: 0.0051 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.016 
     ci_joint_bounds_left: 0.015 
    ci_joint_bounds_right: 0.016 

Current progress: 22 percent done.
FER1L5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.618745e-02	ci left: 6.822418e-01	ci right 7.004466e-01	k: 6914	n:10000
Cons ci ratio: 6.256426e-02	ci left: 2.729972e-01	ci right 2.907301e-01	k: 2818	n:10000
KS ci ratio: 1.301240e-02	ci left: 8.947738e-01	ci right 9.065916e-01	k: 9008	n:10000
FER1L5   10000 perm   3 sec   (3722 perm/sec)   p_kst 9.008000e-01   p_cons 2.818000e-01   p_joint 6.914000e-01

Outputting figure to mutsig2_images.part000000000064/FER1L5.4_6490_10000_0.9008_0.2818_0.6914.png
                gene_name: FER1L5
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 24 percent done.
FERD3L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.032345e-02	ci left: 2.878562e-01	ci right 3.058623e-01	k: 2968	n:10000
Cons ci ratio: 2.356124e-02	ci left: 7.258284e-01	ci right 7.432348e-01	k: 7346	n:10000
KS ci ratio: 8.394965e-02	ci left: 1.714324e-01	ci right 1.865551e-01	k: 1789	n:10000
FERD3L   10000 perm   2 sec   (6451 perm/sec)   p_kst 1.789000e-01   p_cons 7.346000e-01   p_joint 2.968000e-01

Outputting figure to mutsig2_images.part000000000064/FERD3L.4_505_10000_0.1789_0.7346_0.2968.png
                gene_name: FERD3L
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 25 percent done.
FEZF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.013191e-03	ci left: 9.813449e-01	ci right 9.863675e-01	k: 9840	n:10000
KS ci ratio: 1.540909e-02	ci left: 8.593708e-01	ci right 8.728151e-01	k: 8662	n:10000
FEZF1   10000 perm   2 sec   (5787 perm/sec)   p_kst 8.662000e-01   p_cons 9.840000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000064/FEZF1.4_1444_10000_0.8662_0.984_1.png
                gene_name: FEZF1
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 27 percent done.
FGB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.902988e-02	ci left: 4.922509e-01	ci right 5.119479e-01	k: 5021	n:10000
Cons ci ratio: 2.185325e-02	ci left: 7.544383e-01	ci right 7.712083e-01	k: 7629	n:10000
KS ci ratio: 6.709020e-02	ci left: 2.458864e-01	ci right 2.630569e-01	k: 2544	n:10000
FGB   10000 perm   2 sec   (5568 perm/sec)   p_kst 2.544000e-01   p_cons 7.629000e-01   p_joint 5.021000e-01

Outputting figure to mutsig2_images.part000000000064/FGB.4_1508_10000_0.2544_0.7629_0.5021.png
                gene_name: FGB
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 29 percent done.
FGD6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.181872e-01	ci left: 9.321372e-02	ci right 1.050210e-01	k: 990	n:10000
Cons ci ratio: 1.523350e-01	ci left: 5.735153e-02	ci right 6.690551e-02	k: 620	n:10000
KS ci ratio: 1.332907e-01	ci left: 7.427098e-02	ci right 8.497542e-02	k: 795	n:10000
FGD6   10000 perm   2 sec   (4557 perm/sec)   p_kst 7.950000e-02   p_cons 6.200000e-02   p_joint 9.900000e-02

Joint ci ratio: 1.318068e-01	ci left: 3.955227e-02	ci right 4.518176e-02	k: 846	n:20000
Cons ci ratio: 1.038086e-01	ci left: 6.308517e-02	ci right 7.004149e-02	k: 1330	n:20000
KS ci ratio: 9.559662e-02	ci left: 7.383094e-02	ci right 8.129243e-02	k: 1550	n:20000
FGD6   20000 perm   5 sec   (4153 perm/sec)   p_kst 7.750000e-02   p_cons 6.650000e-02   p_joint 4.230000e-02

Joint ci ratio: 1.239423e-01	ci left: 3.026347e-02	ci right 3.429444e-02	k: 967	n:30000
Cons ci ratio: 8.810456e-02	ci left: 5.916639e-02	ci right 6.465217e-02	k: 1856	n:30000
KS ci ratio: 7.804577e-02	ci left: 7.453141e-02	ci right 8.061736e-02	k: 2326	n:30000
FGD6   30000 perm   8 sec   (3981 perm/sec)   p_kst 7.753333e-02   p_cons 6.186667e-02   p_joint 3.223333e-02

Joint ci ratio: 9.530756e-02	ci left: 3.863795e-02	ci right 4.252911e-02	k: 1622	n:40000
Cons ci ratio: 7.612098e-02	ci left: 5.980340e-02	ci right 6.456040e-02	k: 2486	n:40000
KS ci ratio: 6.737430e-02	ci left: 7.539017e-02	ci right 8.067128e-02	k: 3120	n:40000
FGD6   40000 perm   10 sec   (3881 perm/sec)   p_kst 7.800000e-02   p_cons 6.215000e-02   p_joint 4.055000e-02

Outputting figure to mutsig2_images.part000000000064/FGD6.4_4377_40000_0.078_0.06215_0.04055.png
                gene_name: FGD6
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.078 
        ci_ks_bounds_left: 0.075 
       ci_ks_bounds_right: 0.081 
                   p_cons: 0.062 
      ci_cons_bounds_left: 0.060 
     ci_cons_bounds_right: 0.065 
                  p_joint: 0.041 
     ci_joint_bounds_left: 0.039 
    ci_joint_bounds_right: 0.043 

Current progress: 31 percent done.
FBXW9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.283085e-02	ci left: 7.380550e-01	ci right 7.552011e-01	k: 7467	n:10000
KS ci ratio: 1.185224e-02	ci left: 9.107001e-01	ci right 9.216561e-01	k: 9163	n:10000
FBXW9   10000 perm   2 sec   (5989 perm/sec)   p_kst 9.163000e-01   p_cons 7.467000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000064/FBXW9.3_1417_10000_0.9163_0.7467_1.png
                gene_name: FBXW9
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 33 percent done.
FCER1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.666569e-02	ci left: 5.234634e-01	ci right 5.431172e-01	k: 5333	n:10000
Cons ci ratio: 1.833616e-02	ci left: 8.128353e-01	ci right 8.279776e-01	k: 8205	n:10000
KS ci ratio: 7.762261e-02	ci left: 1.952523e-01	ci right 2.111210e-01	k: 2031	n:10000
FCER1A   10000 perm   1 sec   (6672 perm/sec)   p_kst 2.031000e-01   p_cons 8.205000e-01   p_joint 5.333000e-01

Outputting figure to mutsig2_images.part000000000064/FCER1A.3_794_10000_0.2031_0.8205_0.5333.png
                gene_name: FCER1A
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 35 percent done.
FCGR2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.399846e-03	ci left: 9.410771e-01	ci right 9.500611e-01	k: 9457	n:10000
KS ci ratio: 3.090116e-02	ci left: 6.070880e-01	ci right 6.262440e-01	k: 6167	n:10000
FCGR2B   10000 perm   2 sec   (6545 perm/sec)   p_kst 6.167000e-01   p_cons 9.457000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000064/FCGR2B.3_965_10000_0.6167_0.9457_1.png
                gene_name: FCGR2B
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 37 percent done.
FCHO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.446164e-02	ci left: 5.542133e-01	ci right 5.737494e-01	k: 5640	n:10000
Cons ci ratio: 5.710380e-02	ci left: 3.110592e-01	ci right 3.294457e-01	k: 3202	n:10000
KS ci ratio: 1.480552e-02	ci left: 8.685630e-01	ci right 8.816176e-01	k: 8752	n:10000
FCHO1   10000 perm   2 sec   (5422 perm/sec)   p_kst 8.752000e-01   p_cons 3.202000e-01   p_joint 5.640000e-01

Outputting figure to mutsig2_images.part000000000064/FCHO1.3_2788_10000_0.8752_0.3202_0.564.png
                gene_name: FCHO1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 39 percent done.
FCN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.201483e-01	ci left: 9.039166e-02	ci right 1.020448e-01	k: 961	n:10000
Cons ci ratio: 3.282959e-02	ci left: 5.779777e-01	ci right 5.973712e-01	k: 5877	n:10000
KS ci ratio: 1.692637e-01	ci left: 4.657748e-02	ci right 5.528648e-02	k: 508	n:10000
FCN1   10000 perm   2 sec   (6446 perm/sec)   p_kst 5.080000e-02   p_cons 5.877000e-01   p_joint 9.610000e-02

Joint ci ratio: 9.470588e-02	ci left: 7.515134e-02	ci right 8.267162e-02	k: 1577	n:20000
Cons ci ratio: 2.317944e-02	ci left: 5.815923e-01	ci right 5.952820e-01	k: 11769	n:20000
KS ci ratio: 1.156747e-01	ci left: 5.115076e-02	ci right 5.747960e-02	k: 1085	n:20000
FCN1   20000 perm   4 sec   (5653 perm/sec)   p_kst 5.425000e-02   p_cons 5.884500e-01   p_joint 7.885000e-02

Joint ci ratio: 5.823893e-02	ci left: 1.273658e-01	ci right 1.350391e-01	k: 3935	n:30000
Cons ci ratio: 1.894258e-02	ci left: 5.824388e-01	ci right 5.936108e-01	k: 17641	n:30000
KS ci ratio: 9.405248e-02	ci left: 5.215340e-02	ci right 5.733326e-02	k: 1641	n:30000
FCN1   30000 perm   6 sec   (5327 perm/sec)   p_kst 5.470000e-02   p_cons 5.880333e-01   p_joint 1.311667e-01

Outputting figure to mutsig2_images.part000000000064/FCN1.3_1017_30000_0.0547_0.58803_0.13117.png
                gene_name: FCN1
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.055 
        ci_ks_bounds_left: 0.052 
       ci_ks_bounds_right: 0.057 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 41 percent done.
FCRL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.493392e-02	ci left: 8.666216e-01	ci right 8.797602e-01	k: 8733	n:10000
Cons ci ratio: 1.023915e-02	ci left: 9.312316e-01	ci right 9.409125e-01	k: 9362	n:10000
KS ci ratio: 3.523170e-02	ci left: 5.432913e-01	ci right 5.628777e-01	k: 5531	n:10000
FCRL4   10000 perm   2 sec   (6513 perm/sec)   p_kst 5.531000e-01   p_cons 9.362000e-01   p_joint 8.733000e-01

Outputting figure to mutsig2_images.part000000000064/FCRL4.3_1596_10000_0.5531_0.9362_0.8733.png
                gene_name: FCRL4
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 43 percent done.
FCRLA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.902580e-02	ci left: 3.803239e-01	ci right 3.995402e-01	k: 3899	n:10000
Cons ci ratio: 2.849757e-02	ci left: 6.447840e-01	ci right 6.635261e-01	k: 6542	n:10000
KS ci ratio: 8.908765e-02	ci left: 1.549259e-01	ci right 1.694715e-01	k: 1621	n:10000
FCRLA   10000 perm   1 sec   (6925 perm/sec)   p_kst 1.621000e-01   p_cons 6.542000e-01   p_joint 3.899000e-01

Outputting figure to mutsig2_images.part000000000064/FCRLA.3_1173_10000_0.1621_0.6542_0.3899.png
                gene_name: FCRLA
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 45 percent done.
FEM1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.475807e-02	ci left: 8.692784e-01	ci right 8.823018e-01	k: 8759	n:10000
KS ci ratio: 3.165106e-02	ci left: 5.956404e-01	ci right 6.148982e-01	k: 6053	n:10000
FEM1B   10000 perm   2 sec   (5719 perm/sec)   p_kst 6.053000e-01   p_cons 8.759000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000064/FEM1B.3_1892_10000_0.6053_0.8759_1.png
                gene_name: FEM1B
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 47 percent done.
FER
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.263779e-02	ci left: 7.412900e-01	ci right 7.583643e-01	k: 7499	n:10000
KS ci ratio: 3.547462e-02	ci left: 5.398854e-01	ci right 5.594856e-01	k: 5497	n:10000
FER   10000 perm   2 sec   (5603 perm/sec)   p_kst 5.497000e-01   p_cons 7.499000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000064/FER.3_2541_10000_0.5497_0.7499_1.png
                gene_name: FER
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 49 percent done.
FETUB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.158604e-03	ci left: 9.728080e-01	ci right 9.789104e-01	k: 9760	n:10000
Cons ci ratio: 2.740949e-02	ci left: 6.622964e-01	ci right 6.808035e-01	k: 6716	n:10000
KS ci ratio: 1.700177e-02	ci left: 8.343964e-01	ci right 8.488040e-01	k: 8417	n:10000
FETUB   10000 perm   2 sec   (6466 perm/sec)   p_kst 8.417000e-01   p_cons 6.716000e-01   p_joint 9.760000e-01

Outputting figure to mutsig2_images.part000000000064/FETUB.3_1177_10000_0.8417_0.6716_0.976.png
                gene_name: FETUB
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 51 percent done.
FEZF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.109888e-01	ci left: 1.047120e-01	ci right 1.171157e-01	k: 1108	n:10000
Cons ci ratio: 5.349131e-02	ci left: 3.399509e-01	ci right 3.587369e-01	k: 3493	n:10000
KS ci ratio: 1.174650e-01	ci left: 9.428457e-02	ci right 1.061495e-01	k: 1001	n:10000
FEZF2   10000 perm   2 sec   (5795 perm/sec)   p_kst 1.001000e-01   p_cons 3.493000e-01   p_joint 1.108000e-01

Joint ci ratio: 5.394834e-02	ci left: 2.031846e-01	ci right 2.145002e-01	k: 4176	n:20000
Cons ci ratio: 3.798678e-02	ci left: 3.407987e-01	ci right 3.540457e-01	k: 6948	n:20000
KS ci ratio: 8.359604e-02	ci left: 9.489433e-02	ci right 1.032226e-01	k: 1980	n:20000
FEZF2   20000 perm   4 sec   (5181 perm/sec)   p_kst 9.900000e-02   p_cons 3.474000e-01   p_joint 2.088000e-01

Outputting figure to mutsig2_images.part000000000064/FEZF2.3_1396_20000_0.099_0.3474_0.2088.png
                gene_name: FEZF2
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.099 
        ci_ks_bounds_left: 0.095 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 53 percent done.
FGD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.416829e-01	ci left: 6.604181e-02	ci right 7.620974e-02	k: 710	n:10000
Cons ci ratio: 4.063115e-02	ci left: 4.721630e-01	ci right 4.918475e-01	k: 4820	n:10000
KS ci ratio: 1.829303e-01	ci left: 3.987233e-02	ci right 4.799604e-02	k: 438	n:10000
FGD1   10000 perm   2 sec   (5269 perm/sec)   p_kst 4.380000e-02   p_cons 4.820000e-01   p_joint 7.100000e-02

Joint ci ratio: 7.506092e-02	ci left: 1.154776e-01	ci right 1.245332e-01	k: 2399	n:20000
Cons ci ratio: 2.827361e-02	ci left: 4.830987e-01	ci right 4.970042e-01	k: 9801	n:20000
KS ci ratio: 1.312415e-01	ci left: 3.989122e-02	ci right 4.554270e-02	k: 853	n:20000
FGD1   20000 perm   4 sec   (4711 perm/sec)   p_kst 4.265000e-02   p_cons 4.900500e-01   p_joint 1.199500e-01

Joint ci ratio: 6.001553e-02	ci left: 1.207510e-01	ci right 1.282552e-01	k: 3734	n:30000
Cons ci ratio: 2.296843e-02	ci left: 4.869270e-01	ci right 4.982745e-01	k: 14778	n:30000
KS ci ratio: 1.069847e-01	ci left: 4.053731e-02	ci right 4.515175e-02	k: 1284	n:30000
FGD1   30000 perm   7 sec   (4509 perm/sec)   p_kst 4.280000e-02   p_cons 4.926000e-01   p_joint 1.244667e-01

Joint ci ratio: 5.800510e-02	ci left: 9.949474e-02	ci right 1.054631e-01	k: 4098	n:40000
Cons ci ratio: 1.992336e-02	ci left: 4.868890e-01	ci right 4.967122e-01	k: 19672	n:40000
KS ci ratio: 9.098164e-02	ci left: 4.232868e-02	ci right 4.638780e-02	k: 1773	n:40000
FGD1   40000 perm   9 sec   (4375 perm/sec)   p_kst 4.432500e-02   p_cons 4.918000e-01   p_joint 1.024500e-01

Outputting figure to mutsig2_images.part000000000064/FGD1.3_2958_40000_0.044325_0.4918_0.10245.png
                gene_name: FGD1
               theta_stop: 0.091 
                    nperm: 40000 
                     p_ks: 0.044 
        ci_ks_bounds_left: 0.042 
       ci_ks_bounds_right: 0.046 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.099 
    ci_joint_bounds_right: 0.11 

Current progress: 55 percent done.
FGF12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.743137e-02	ci left: 1.960405e-01	ci right 2.119323e-01	k: 2039	n:10000
Cons ci ratio: 8.387610e-03	ci left: 9.521083e-01	ci right 9.602233e-01	k: 9563	n:10000
KS ci ratio: 1.026797e-01	ci left: 1.206309e-01	ci right 1.337871e-01	k: 1271	n:10000
FGF12   10000 perm   1 sec   (6766 perm/sec)   p_kst 1.271000e-01   p_cons 9.563000e-01   p_joint 2.039000e-01

Joint ci ratio: 3.594172e-02	ci left: 3.661920e-01	ci right 3.796450e-01	k: 7458	n:20000
Cons ci ratio: 5.810276e-03	ci left: 9.550761e-01	ci right 9.606898e-01	k: 19159	n:20000
KS ci ratio: 7.061667e-02	ci left: 1.287656e-01	ci right 1.382412e-01	k: 2669	n:20000
FGF12   20000 perm   3 sec   (5837 perm/sec)   p_kst 1.334500e-01   p_cons 9.579500e-01   p_joint 3.729000e-01

Outputting figure to mutsig2_images.part000000000064/FGF12.3_769_20000_0.13345_0.95795_0.3729.png
                gene_name: FGF12
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.38 

Current progress: 57 percent done.
FBXW12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.682907e-01	ci left: 1.809309e-02	ci right 2.379077e-02	k: 208	n:10000
Cons ci ratio: 2.505034e-01	ci left: 2.090184e-02	ci right 2.697984e-02	k: 238	n:10000
KS ci ratio: 5.564151e-02	ci left: 3.223729e-01	ci right 3.409253e-01	k: 3316	n:10000
FBXW12   10000 perm   1 sec   (6701 perm/sec)   p_kst 3.316000e-01   p_cons 2.380000e-02   p_joint 2.080000e-02

Joint ci ratio: 2.326135e-01	ci left: 1.237052e-02	ci right 1.567300e-02	k: 279	n:20000
Cons ci ratio: 1.741732e-01	ci left: 2.254539e-02	ci right 2.689429e-02	k: 493	n:20000
KS ci ratio: 3.960326e-02	ci left: 3.222399e-01	ci right 3.353099e-01	k: 6575	n:20000
FBXW12   20000 perm   3 sec   (5813 perm/sec)   p_kst 3.287500e-01   p_cons 2.465000e-02   p_joint 1.395000e-02

Joint ci ratio: 1.236128e-01	ci left: 3.042513e-02	ci right 3.446608e-02	k: 972	n:30000
Cons ci ratio: 1.437114e-01	ci left: 2.245846e-02	ci right 2.596784e-02	k: 725	n:30000
KS ci ratio: 3.238238e-02	ci left: 3.228203e-01	ci right 3.334796e-01	k: 9844	n:30000
FBXW12   30000 perm   5 sec   (5480 perm/sec)   p_kst 3.281333e-01   p_cons 2.416667e-02   p_joint 3.240000e-02

Joint ci ratio: 1.149527e-01	ci left: 2.662382e-02	ci right 2.989514e-02	k: 1129	n:40000
Cons ci ratio: 1.248553e-01	ci left: 2.254651e-02	ci right 2.557312e-02	k: 961	n:40000
KS ci ratio: 2.808642e-02	ci left: 3.228762e-01	ci right 3.320989e-01	k: 13099	n:40000
FBXW12   40000 perm   8 sec   (5278 perm/sec)   p_kst 3.274750e-01   p_cons 2.402500e-02   p_joint 2.822500e-02

Joint ci ratio: 1.062944e-01	ci left: 2.507074e-02	ci right 2.790460e-02	k: 1323	n:50000
Cons ci ratio: 1.117934e-01	ci left: 2.265673e-02	ci right 2.535892e-02	k: 1199	n:50000
KS ci ratio: 2.507457e-02	ci left: 3.241840e-01	ci right 3.324360e-01	k: 16415	n:50000
FBXW12   50000 perm   10 sec   (5109 perm/sec)   p_kst 3.283000e-01   p_cons 2.398000e-02   p_joint 2.646000e-02

Joint ci ratio: 9.899638e-02	ci left: 2.420452e-02	ci right 2.674166e-02	k: 1527	n:60000
Cons ci ratio: 1.019444e-01	ci left: 2.282261e-02	ci right 2.529039e-02	k: 1442	n:60000
KS ci ratio: 2.295244e-02	ci left: 3.233462e-01	ci right 3.308706e-01	k: 19626	n:60000
FBXW12   60000 perm   12 sec   (4974 perm/sec)   p_kst 3.271000e-01   p_cons 2.403333e-02   p_joint 2.545000e-02

Joint ci ratio: 8.867750e-02	ci left: 2.595155e-02	ci right 2.837357e-02	k: 1900	n:70000
Cons ci ratio: 9.474328e-02	ci left: 2.273928e-02	ci right 2.501470e-02	k: 1670	n:70000
KS ci ratio: 2.126030e-02	ci left: 3.234109e-01	ci right 3.303749e-01	k: 22882	n:70000
FBXW12   70000 perm   14 sec   (4842 perm/sec)   p_kst 3.268857e-01   p_cons 2.385714e-02   p_joint 2.714286e-02

Outputting figure to mutsig2_images.part000000000064/FBXW12.2_1472_70000_0.32689_0.023857_0.027143.png
                gene_name: FBXW12
               theta_stop: 0.095 
                    nperm: 70000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.024 
      ci_cons_bounds_left: 0.023 
     ci_cons_bounds_right: 0.025 
                  p_joint: 0.027 
     ci_joint_bounds_left: 0.026 
    ci_joint_bounds_right: 0.028 

Current progress: 59 percent done.
FBXW5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.852468e-02	ci left: 3.852013e-01	ci right 4.044600e-01	k: 3948	n:10000
Cons ci ratio: 6.933755e-02	ci left: 2.337305e-01	ci right 2.506200e-01	k: 2421	n:10000
KS ci ratio: 8.994959e-02	ci left: 1.523737e-01	ci right 1.668252e-01	k: 1595	n:10000
FBXW5   10000 perm   2 sec   (6458 perm/sec)   p_kst 1.595000e-01   p_cons 2.421000e-01   p_joint 3.948000e-01

Outputting figure to mutsig2_images.part000000000064/FBXW5.2_1733_10000_0.1595_0.2421_0.3948.png
                gene_name: FBXW5
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.40 

Current progress: 61 percent done.
FBXW8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.811442e-02	ci left: 6.509218e-01	ci right 6.695847e-01	k: 6603	n:10000
Cons ci ratio: 1.675881e-02	ci left: 8.382657e-01	ci right 8.525325e-01	k: 8455	n:10000
KS ci ratio: 4.827181e-02	ci left: 3.876902e-01	ci right 4.069696e-01	k: 3973	n:10000
FBXW8   10000 perm   2 sec   (6402 perm/sec)   p_kst 3.973000e-01   p_cons 8.455000e-01   p_joint 6.603000e-01

Outputting figure to mutsig2_images.part000000000064/FBXW8.2_1841_10000_0.3973_0.8455_0.6603.png
                gene_name: FBXW8
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 63 percent done.
FCAMR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.360775e-02	ci left: 5.665439e-01	ci right 5.860116e-01	k: 5763	n:10000
Cons ci ratio: 9.536123e-03	ci left: 9.395202e-01	ci right 9.486189e-01	k: 9442	n:10000
KS ci ratio: 7.411193e-02	ci left: 2.104338e-01	ci right 2.267305e-01	k: 2185	n:10000
FCAMR   10000 perm   2 sec   (6191 perm/sec)   p_kst 2.185000e-01   p_cons 9.442000e-01   p_joint 5.763000e-01

Outputting figure to mutsig2_images.part000000000064/FCAMR.2_1766_10000_0.2185_0.9442_0.5763.png
                gene_name: FCAMR
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 65 percent done.
FCGR2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.307401e-02	ci left: 5.743665e-01	ci right 5.937845e-01	k: 5841	n:10000
Cons ci ratio: 1.168940e-02	ci left: 9.128618e-01	ci right 9.236931e-01	k: 9184	n:10000
KS ci ratio: 3.602602e-01	ci left: 9.594514e-03	ci right 1.389697e-02	k: 116	n:10000
FCGR2A   10000 perm   1 sec   (6686 perm/sec)   p_kst 1.160000e-02   p_cons 9.184000e-01   p_joint 5.841000e-01

Joint ci ratio: 2.321295e-02	ci left: 5.808907e-01	ci right 5.945838e-01	k: 11755	n:20000
Cons ci ratio: 8.824610e-03	ci left: 9.039098e-01	ci right 9.119711e-01	k: 18160	n:20000
KS ci ratio: 2.558573e-01	ci left: 1.011552e-02	ci right 1.312898e-02	k: 231	n:20000
FCGR2A   20000 perm   3 sec   (5846 perm/sec)   p_kst 1.155000e-02   p_cons 9.080000e-01   p_joint 5.877500e-01

Joint ci ratio: 3.060664e-02	ci left: 3.480549e-01	ci right 3.589068e-01	k: 10604	n:30000
Cons ci ratio: 6.763532e-03	ci left: 9.148719e-01	ci right 9.211135e-01	k: 27541	n:30000
KS ci ratio: 2.098253e-01	ci left: 1.029273e-02	ci right 1.273658e-02	k: 344	n:30000
FCGR2A   30000 perm   5 sec   (5502 perm/sec)   p_kst 1.146667e-02   p_cons 9.180333e-01   p_joint 3.534667e-01

Joint ci ratio: 2.642513e-02	ci left: 3.501842e-01	ci right 3.595869e-01	k: 14195	n:40000
Cons ci ratio: 6.171977e-03	ci left: 9.069503e-01	ci right 9.125900e-01	k: 36392	n:40000
KS ci ratio: 1.770984e-01	ci left: 1.102769e-02	ci right 1.319401e-02	k: 483	n:40000
FCGR2A   40000 perm   8 sec   (5270 perm/sec)   p_kst 1.207500e-02   p_cons 9.098000e-01   p_joint 3.548750e-01

Joint ci ratio: 2.514980e-02	ci left: 3.228683e-01	ci right 3.311118e-01	k: 16349	n:50000
Cons ci ratio: 5.548489e-03	ci left: 9.064047e-01	ci right 9.114677e-01	k: 45448	n:50000
KS ci ratio: 1.578745e-01	ci left: 1.121774e-02	ci right 1.315952e-02	k: 608	n:50000
FCGR2A   50000 perm   10 sec   (5108 perm/sec)   p_kst 1.216000e-02   p_cons 9.089600e-01   p_joint 3.269800e-01

Joint ci ratio: 2.292293e-02	ci left: 3.239111e-01	ci right 3.314389e-01	k: 19660	n:60000
Cons ci ratio: 4.759942e-03	ci left: 9.165183e-01	ci right 9.209077e-01	k: 55124	n:60000
KS ci ratio: 1.426252e-01	ci left: 1.154592e-02	ci right 1.333504e-02	k: 745	n:60000
FCGR2A   60000 perm   12 sec   (4973 perm/sec)   p_kst 1.241667e-02   p_cons 9.187333e-01   p_joint 3.276667e-01

Joint ci ratio: 2.129139e-02	ci left: 3.227698e-01	ci right 3.297303e-01	k: 22837	n:70000
Cons ci ratio: 4.410319e-03	ci left: 9.165642e-01	ci right 9.206296e-01	k: 64303	n:70000
KS ci ratio: 1.351728e-01	ci left: 1.106842e-02	ci right 1.268670e-02	k: 830	n:70000
FCGR2A   70000 perm   14 sec   (4855 perm/sec)   p_kst 1.185714e-02   p_cons 9.186143e-01   p_joint 3.262429e-01

Joint ci ratio: 1.994778e-02	ci left: 3.223031e-01	ci right 3.288096e-01	k: 26044	n:80000
Cons ci ratio: 4.133765e-03	ci left: 9.163931e-01	ci right 9.202015e-01	k: 73465	n:80000
KS ci ratio: 1.258881e-01	ci left: 1.122063e-02	ci right 1.274007e-02	k: 957	n:80000
FCGR2A   80000 perm   17 sec   (4739 perm/sec)   p_kst 1.196250e-02   p_cons 9.183125e-01   p_joint 3.255500e-01

Joint ci ratio: 1.877968e-02	ci left: 3.231261e-01	ci right 3.292629e-01	k: 29357	n:90000
Cons ci ratio: 3.890145e-03	ci left: 9.167832e-01	ci right 9.203675e-01	k: 82673	n:90000
KS ci ratio: 1.176298e-01	ci left: 1.147142e-02	ci right 1.291583e-02	k: 1096	n:90000
FCGR2A   90000 perm   19 sec   (4636 perm/sec)   p_kst 1.217778e-02   p_cons 9.185889e-01   p_joint 3.261889e-01

Joint ci ratio: 1.782449e-02	ci left: 3.230749e-01	ci right 3.288952e-01	k: 32598	n:100000
Cons ci ratio: 3.692445e-03	ci left: 9.167972e-01	ci right 9.201985e-01	k: 91851	n:100000
KS ci ratio: 1.124317e-01	ci left: 1.133432e-02	ci right 1.269421e-02	k: 1200	n:100000
FCGR2A   100000 perm   22 sec   (4530 perm/sec)   p_kst 1.200000e-02   p_cons 9.185100e-01   p_joint 3.259800e-01

Joint ci ratio: 1.698862e-02	ci left: 3.233751e-01	ci right 3.289249e-01	k: 35876	n:110000
Cons ci ratio: 3.515911e-03	ci left: 9.170785e-01	ci right 9.203175e-01	k: 101058	n:110000
KS ci ratio: 1.082451e-01	ci left: 1.114367e-02	ci right 1.242772e-02	k: 1295	n:110000
FCGR2A   110000 perm   25 sec   (4438 perm/sec)   p_kst 1.177273e-02   p_cons 9.187091e-01   p_joint 3.261455e-01

Joint ci ratio: 1.628653e-02	ci left: 3.229238e-01	ci right 3.282346e-01	k: 39069	n:120000
Cons ci ratio: 3.376553e-03	ci left: 9.166855e-01	ci right 9.197942e-01	k: 110190	n:120000
KS ci ratio: 1.038906e-01	ci left: 1.111549e-02	ci right 1.234161e-02	k: 1406	n:120000
FCGR2A   120000 perm   28 sec   (4351 perm/sec)   p_kst 1.171667e-02   p_cons 9.182500e-01   p_joint 3.255750e-01

Joint ci ratio: 1.563905e-02	ci left: 3.232677e-01	ci right 3.283708e-01	k: 42356	n:130000
Cons ci ratio: 3.240338e-03	ci left: 9.169220e-01	ci right 9.199055e-01	k: 119395	n:130000
KS ci ratio: 9.926444e-02	ci left: 1.126508e-02	ci right 1.244915e-02	k: 1540	n:130000
FCGR2A   130000 perm   30 sec   (4268 perm/sec)   p_kst 1.184615e-02   p_cons 9.184231e-01   p_joint 3.258154e-01

Outputting figure to mutsig2_images.part000000000064/FCGR2A.2_982_130000_0.011846_0.91842_0.32582.png
                gene_name: FCGR2A
               theta_stop: 0.099 
                    nperm: 130000 
                     p_ks: 0.012 
        ci_ks_bounds_left: 0.011 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 67 percent done.
FCGR3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.878267e-02	ci left: 8.055218e-01	ci right 8.208953e-01	k: 8133	n:10000
Cons ci ratio: 3.513917e-02	ci left: 5.445937e-01	ci right 5.641746e-01	k: 5544	n:10000
KS ci ratio: 1.016296e-01	ci left: 1.228802e-01	ci right 1.361365e-01	k: 1294	n:10000
FCGR3B   10000 perm   1 sec   (7343 perm/sec)   p_kst 1.294000e-01   p_cons 5.544000e-01   p_joint 8.133000e-01

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 2.615313e-02	ci left: 5.220534e-01	ci right 5.359382e-01	k: 10580	n:20000
KS ci ratio: 7.150001e-02	ci left: 1.259590e-01	ci right 1.353487e-01	k: 2612	n:20000
FCGR3B   20000 perm   3 sec   (6288 perm/sec)   p_kst 1.306000e-01   p_cons 5.290000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000064/FCGR3B.2_722_20000_0.1306_0.529_1.png
                gene_name: FCGR3B
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 69 percent done.
FCHO2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.343503e-02	ci left: 4.390178e-01	ci right 4.586120e-01	k: 4488	n:10000
Cons ci ratio: 4.219262e-02	ci left: 4.533887e-01	ci right 4.730328e-01	k: 4632	n:10000
KS ci ratio: 7.391724e-02	ci left: 2.113215e-01	ci right 2.276422e-01	k: 2194	n:10000
FCHO2   10000 perm   2 sec   (5981 perm/sec)   p_kst 2.194000e-01   p_cons 4.632000e-01   p_joint 4.488000e-01

Outputting figure to mutsig2_images.part000000000064/FCHO2.2_2537_10000_0.2194_0.4632_0.4488.png
                gene_name: FCHO2
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 71 percent done.
FCHSD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.620859e-02	ci left: 4.087065e-01	ci right 4.281410e-01	k: 4184	n:10000
KS ci ratio: 3.181688e-02	ci left: 5.931307e-01	ci right 6.124094e-01	k: 6028	n:10000
FCHSD1   10000 perm   2 sec   (5906 perm/sec)   p_kst 6.028000e-01   p_cons 4.184000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000064/FCHSD1.2_2153_10000_0.6028_0.4184_1.png
                gene_name: FCHSD1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
FCHSD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.770315e-03	ci left: 9.829604e-01	ci right 9.877507e-01	k: 9855	n:10000
Cons ci ratio: 3.780034e-02	ci left: 5.082525e-01	ci right 5.279369e-01	k: 5181	n:10000
KS ci ratio: 5.099836e-02	ci left: 3.618190e-01	ci right 3.808560e-01	k: 3713	n:10000
FCHSD2   10000 perm   2 sec   (5828 perm/sec)   p_kst 3.713000e-01   p_cons 5.181000e-01   p_joint 9.855000e-01

Outputting figure to mutsig2_images.part000000000064/FCHSD2.2_2303_10000_0.3713_0.5181_0.9855.png
                gene_name: FCHSD2
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 75 percent done.
FDXACB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.869303e-02	ci left: 6.416654e-01	ci right 6.604465e-01	k: 6511	n:10000
Cons ci ratio: 3.845652e-02	ci left: 4.996504e-01	ci right 5.193441e-01	k: 5095	n:10000
KS ci ratio: 6.059909e-02	ci left: 2.859734e-01	ci right 3.039462e-01	k: 2949	n:10000
FDXACB1   10000 perm   2 sec   (6109 perm/sec)   p_kst 2.949000e-01   p_cons 5.095000e-01   p_joint 6.511000e-01

Outputting figure to mutsig2_images.part000000000064/FDXACB1.2_1895_10000_0.2949_0.5095_0.6511.png
                gene_name: FDXACB1
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 76 percent done.
FDXR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.776711e-02	ci left: 1.589518e-01	ci right 1.736431e-01	k: 1662	n:10000
Cons ci ratio: 8.165271e-02	ci left: 1.795967e-01	ci right 1.949860e-01	k: 1872	n:10000
KS ci ratio: 9.715309e-02	ci left: 1.331568e-01	ci right 1.468536e-01	k: 1399	n:10000
FDXR   10000 perm   2 sec   (6315 perm/sec)   p_kst 1.399000e-01   p_cons 1.872000e-01   p_joint 1.662000e-01

Outputting figure to mutsig2_images.part000000000064/FDXR.2_1542_10000_0.1399_0.1872_0.1662.png
                gene_name: FDXR
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 78 percent done.
FECH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.169949e-01	ci left: 2.816365e-02	ci right 3.511272e-02	k: 315	n:10000
Cons ci ratio: 4.072890e-02	ci left: 4.709642e-01	ci right 4.906470e-01	k: 4808	n:10000
KS ci ratio: 2.169949e-01	ci left: 2.816365e-02	ci right 3.511272e-02	k: 315	n:10000
FECH   10000 perm   2 sec   (6366 perm/sec)   p_kst 3.150000e-02   p_cons 4.808000e-01   p_joint 3.150000e-02

Joint ci ratio: 1.565382e-01	ci left: 2.801598e-02	ci right 3.282183e-02	k: 607	n:20000
Cons ci ratio: 2.881926e-02	ci left: 4.735540e-01	ci right 4.874517e-01	k: 9610	n:20000
KS ci ratio: 1.565382e-01	ci left: 2.801598e-02	ci right 3.282183e-02	k: 607	n:20000
FECH   20000 perm   4 sec   (5559 perm/sec)   p_kst 3.035000e-02   p_cons 4.805000e-01   p_joint 3.035000e-02

Joint ci ratio: 1.301125e-01	ci left: 2.745293e-02	ci right 3.130560e-02	k: 880	n:30000
Cons ci ratio: 2.361487e-02	ci left: 4.730661e-01	ci right 4.844046e-01	k: 14362	n:30000
KS ci ratio: 1.301125e-01	ci left: 2.745293e-02	ci right 3.130560e-02	k: 880	n:30000
FECH   30000 perm   6 sec   (5288 perm/sec)   p_kst 2.933333e-02   p_cons 4.787333e-01   p_joint 2.933333e-02

Joint ci ratio: 1.127141e-01	ci left: 2.769335e-02	ci right 3.102544e-02	k: 1173	n:40000
Cons ci ratio: 2.044555e-02	ci left: 4.739686e-01	ci right 4.837844e-01	k: 19155	n:40000
KS ci ratio: 1.127141e-01	ci left: 2.769335e-02	ci right 3.102544e-02	k: 1173	n:40000
FECH   40000 perm   8 sec   (5105 perm/sec)   p_kst 2.932500e-02   p_cons 4.788750e-01   p_joint 2.932500e-02

Joint ci ratio: 1.008325e-01	ci left: 2.785867e-02	ci right 3.083631e-02	k: 1466	n:50000
Cons ci ratio: 1.820660e-02	ci left: 4.766917e-01	ci right 4.854705e-01	k: 24054	n:50000
KS ci ratio: 1.008325e-01	ci left: 2.785867e-02	ci right 3.083631e-02	k: 1466	n:50000
FECH   50000 perm   10 sec   (4955 perm/sec)   p_kst 2.932000e-02   p_cons 4.810800e-01   p_joint 2.932000e-02

Joint ci ratio: 9.178967e-02	ci left: 2.814428e-02	ci right 3.086815e-02	k: 1769	n:60000
Cons ci ratio: 1.656985e-02	ci left: 4.785943e-01	ci right 4.866074e-01	k: 28956	n:60000
KS ci ratio: 9.178967e-02	ci left: 2.814428e-02	ci right 3.086815e-02	k: 1769	n:60000
FECH   60000 perm   12 sec   (4826 perm/sec)   p_kst 2.948333e-02   p_cons 4.826000e-01   p_joint 2.948333e-02

Outputting figure to mutsig2_images.part000000000064/FECH.2_1334_60000_0.029483_0.4826_0.029483.png
                gene_name: FECH
               theta_stop: 0.092 
                    nperm: 60000 
                     p_ks: 0.029 
        ci_ks_bounds_left: 0.028 
       ci_ks_bounds_right: 0.031 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.029 
     ci_joint_bounds_left: 0.028 
    ci_joint_bounds_right: 0.031 

Current progress: 80 percent done.
FEM1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.198729e-02	ci left: 2.203995e-01	ci right 2.369589e-01	k: 2286	n:10000
Cons ci ratio: 2.482064e-02	ci left: 7.048299e-01	ci right 7.226454e-01	k: 7138	n:10000
KS ci ratio: 8.265884e-02	ci left: 1.759564e-01	ci right 1.912283e-01	k: 1835	n:10000
FEM1A   10000 perm   2 sec   (6381 perm/sec)   p_kst 1.835000e-01   p_cons 7.138000e-01   p_joint 2.286000e-01

Outputting figure to mutsig2_images.part000000000064/FEM1A.2_2014_10000_0.1835_0.7138_0.2286.png
                gene_name: FEM1A
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 82 percent done.
FFAR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.087337e-02	ci left: 7.708384e-01	ci right 7.871988e-01	k: 7791	n:10000
Cons ci ratio: 4.109773e-02	ci left: 4.664693e-01	ci right 4.861445e-01	k: 4763	n:10000
KS ci ratio: 3.467229e-02	ci left: 5.512068e-01	ci right 5.707577e-01	k: 5610	n:10000
FFAR2   10000 perm   2 sec   (6645 perm/sec)   p_kst 5.610000e-01   p_cons 4.763000e-01   p_joint 7.791000e-01

Outputting figure to mutsig2_images.part000000000064/FFAR2.2_997_10000_0.561_0.4763_0.7791.png
                gene_name: FFAR2
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 84 percent done.
FFAR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.598589e-03	ci left: 9.771688e-01	ci right 9.827467e-01	k: 9801	n:10000
KS ci ratio: 4.685049e-02	ci left: 4.020311e-01	ci right 4.214204e-01	k: 4117	n:10000
FFAR3   10000 perm   1 sec   (6994 perm/sec)   p_kst 4.117000e-01   p_cons 9.801000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000064/FFAR3.2_1045_10000_0.4117_0.9801_1.png
                gene_name: FFAR3
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
FGD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.297765e-02	ci left: 3.443228e-01	ci right 3.631625e-01	k: 3537	n:10000
Cons ci ratio: 7.287598e-02	ci left: 2.161558e-01	ci right 2.326051e-01	k: 2243	n:10000
KS ci ratio: 3.777008e-02	ci left: 5.086527e-01	ci right 5.283365e-01	k: 5185	n:10000
FGD2   10000 perm   2 sec   (6322 perm/sec)   p_kst 5.185000e-01   p_cons 2.243000e-01   p_joint 3.537000e-01

Outputting figure to mutsig2_images.part000000000064/FGD2.2_2032_10000_0.5185_0.2243_0.3537.png
                gene_name: FGD2
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 88 percent done.
FGD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.768949e-02	ci left: 6.577660e-01	ci right 6.763366e-01	k: 6671	n:10000
Cons ci ratio: 9.298919e-03	ci left: 9.422194e-01	ci right 9.511181e-01	k: 9468	n:10000
KS ci ratio: 1.185194e-01	ci left: 9.272705e-02	ci right 1.045080e-01	k: 985	n:10000
FGD3   10000 perm   2 sec   (5876 perm/sec)   p_kst 9.850000e-02   p_cons 9.468000e-01   p_joint 6.671000e-01

Joint ci ratio: 2.585810e-02	ci left: 5.277075e-01	ci right 5.415824e-01	k: 10693	n:20000
Cons ci ratio: 7.137653e-03	ci left: 9.344149e-01	ci right 9.411571e-01	k: 18757	n:20000
KS ci ratio: 8.237831e-02	ci left: 9.749509e-02	ci right 1.059211e-01	k: 2033	n:20000
FGD3   20000 perm   4 sec   (5199 perm/sec)   p_kst 1.016500e-01   p_cons 9.378500e-01   p_joint 5.346500e-01

Outputting figure to mutsig2_images.part000000000064/FGD3.2_2242_20000_0.10165_0.93785_0.53465.png
                gene_name: FGD3
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.097 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.54 

Current progress: 90 percent done.
FGD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.161173e-01	ci left: 9.632952e-02	ci right 1.083033e-01	k: 1022	n:10000
Cons ci ratio: 4.090336e-01	ci left: 7.243098e-03	ci right 1.105110e-02	k: 90	n:10000
KS ci ratio: 9.331165e-02	ci left: 1.429561e-01	ci right 1.570484e-01	k: 1499	n:10000
FGD4   10000 perm   2 sec   (5803 perm/sec)   p_kst 1.499000e-01   p_cons 9.000000e-03   p_joint 1.022000e-01

Joint ci ratio: 1.637627e-01	ci left: 2.556543e-02	ci right 3.017320e-02	k: 556	n:20000
Cons ci ratio: 2.744071e-01	ci left: 8.714222e-03	ci right 1.153094e-02	k: 201	n:20000
KS ci ratio: 6.576330e-02	ci left: 1.458665e-01	ci right 1.558352e-01	k: 3016	n:20000
FGD4   20000 perm   4 sec   (5128 perm/sec)   p_kst 1.508000e-01   p_cons 1.005000e-02   p_joint 2.780000e-02

Joint ci ratio: 1.433074e-01	ci left: 2.258711e-02	ci right 2.610583e-02	k: 729	n:30000
Cons ci ratio: 2.179593e-01	ci left: 9.503598e-03	ci right 1.185927e-02	k: 319	n:30000
KS ci ratio: 5.353222e-02	ci left: 1.475590e-01	ci right 1.557086e-01	k: 4548	n:30000
FGD4   30000 perm   6 sec   (4870 perm/sec)   p_kst 1.516000e-01   p_cons 1.063333e-02   p_joint 2.430000e-02

Joint ci ratio: 1.458017e-01	ci left: 1.645451e-02	ci right 1.906617e-02	k: 709	n:40000
Cons ci ratio: 1.902672e-01	ci left: 9.500442e-03	ci right 1.152157e-02	k: 419	n:40000
KS ci ratio: 4.632588e-02	ci left: 1.482964e-01	ci right 1.553542e-01	k: 6072	n:40000
FGD4   40000 perm   8 sec   (4707 perm/sec)   p_kst 1.518000e-01   p_cons 1.047500e-02   p_joint 1.772500e-02

Joint ci ratio: 1.343548e-01	ci left: 1.561424e-02	ci right 1.788236e-02	k: 836	n:50000
Cons ci ratio: 1.732067e-01	ci left: 9.261239e-03	ci right 1.103633e-02	k: 506	n:50000
KS ci ratio: 4.168229e-02	ci left: 1.471582e-01	ci right 1.534425e-01	k: 7514	n:50000
FGD4   50000 perm   11 sec   (4573 perm/sec)   p_kst 1.502800e-01   p_cons 1.012000e-02   p_joint 1.672000e-02

Joint ci ratio: 1.370583e-01	ci left: 1.252745e-02	ci right 1.438672e-02	k: 806	n:60000
Cons ci ratio: 1.594986e-01	ci left: 9.171271e-03	ci right 1.077666e-02	k: 597	n:60000
KS ci ratio: 3.815772e-02	ci left: 1.467216e-01	ci right 1.524457e-01	k: 8974	n:60000
FGD4   60000 perm   13 sec   (4458 perm/sec)   p_kst 1.495667e-01   p_cons 9.950000e-03   p_joint 1.343333e-02

Joint ci ratio: 1.269256e-01	ci left: 1.258898e-02	ci right 1.430885e-02	k: 940	n:70000
Cons ci ratio: 1.481685e-01	ci left: 9.166041e-03	ci right 1.064644e-02	k: 692	n:70000
KS ci ratio: 3.522606e-02	ci left: 1.476600e-01	ci right 1.529690e-01	k: 10521	n:70000
FGD4   70000 perm   16 sec   (4359 perm/sec)   p_kst 1.503000e-01   p_cons 9.885714e-03   p_joint 1.342857e-02

Joint ci ratio: 1.176478e-01	ci left: 1.288164e-02	ci right 1.450391e-02	k: 1094	n:80000
Cons ci ratio: 1.360206e-01	ci left: 9.575678e-03	ci right 1.098518e-02	k: 821	n:80000
KS ci ratio: 3.291257e-02	ci left: 1.481280e-01	ci right 1.530973e-01	k: 12048	n:80000
FGD4   80000 perm   19 sec   (4265 perm/sec)   p_kst 1.506000e-01   p_cons 1.026250e-02   p_joint 1.367500e-02

Joint ci ratio: 1.108681e-01	ci left: 1.293991e-02	ci right 1.446945e-02	k: 1232	n:90000
Cons ci ratio: 1.285051e-01	ci left: 9.575334e-03	ci right 1.090096e-02	k: 920	n:90000
KS ci ratio: 3.097397e-02	ci left: 1.487327e-01	ci right 1.534231e-01	k: 13596	n:90000
FGD4   90000 perm   22 sec   (4180 perm/sec)   p_kst 1.510667e-01   p_cons 1.022222e-02   p_joint 1.368889e-02

Joint ci ratio: 1.047148e-01	ci left: 1.309582e-02	ci right 1.455258e-02	k: 1381	n:100000
Cons ci ratio: 1.212145e-01	ci left: 9.722257e-03	ci right 1.098639e-02	k: 1034	n:100000
KS ci ratio: 2.933166e-02	ci left: 1.493128e-01	ci right 1.537675e-01	k: 15153	n:100000
FGD4   100000 perm   24 sec   (4099 perm/sec)   p_kst 1.515300e-01   p_cons 1.034000e-02   p_joint 1.381000e-02

Joint ci ratio: 9.981505e-02	ci left: 1.313663e-02	ci right 1.452555e-02	k: 1520	n:110000
Cons ci ratio: 1.156506e-01	ci left: 9.738230e-03	ci right 1.094234e-02	k: 1136	n:110000
KS ci ratio: 2.797793e-02	ci left: 1.493136e-01	ci right 1.535594e-01	k: 16657	n:110000
FGD4   110000 perm   27 sec   (4023 perm/sec)   p_kst 1.514273e-01   p_cons 1.032727e-02   p_joint 1.381818e-02

Joint ci ratio: 9.536982e-02	ci left: 1.322078e-02	ci right 1.455286e-02	k: 1665	n:120000
Cons ci ratio: 1.106083e-01	ci left: 9.785068e-03	ci right 1.093878e-02	k: 1242	n:120000
KS ci ratio: 2.682631e-02	ci left: 1.490282e-01	ci right 1.530887e-01	k: 18126	n:120000
FGD4   120000 perm   30 sec   (3946 perm/sec)   p_kst 1.510500e-01   p_cons 1.035000e-02   p_joint 1.387500e-02

Joint ci ratio: 9.172722e-02	ci left: 1.321796e-02	ci right 1.449616e-02	k: 1800	n:130000
Cons ci ratio: 1.065727e-01	ci left: 9.750767e-03	ci right 1.085586e-02	k: 1338	n:130000
KS ci ratio: 2.578130e-02	ci left: 1.490347e-01	ci right 1.529348e-01	k: 19627	n:130000
FGD4   130000 perm   34 sec   (3878 perm/sec)   p_kst 1.509769e-01   p_cons 1.029231e-02   p_joint 1.384615e-02

Joint ci ratio: 8.847246e-02	ci left: 1.321638e-02	ci right 1.444673e-02	k: 1935	n:140000
Cons ci ratio: 1.029126e-01	ci left: 9.728986e-03	ci right 1.079144e-02	k: 1435	n:140000
KS ci ratio: 2.482885e-02	ci left: 1.492560e-01	ci right 1.530156e-01	k: 21158	n:140000
FGD4   140000 perm   37 sec   (3796 perm/sec)   p_kst 1.511286e-01   p_cons 1.025000e-02   p_joint 1.382143e-02

Joint ci ratio: 8.520812e-02	ci left: 1.332013e-02	ci right 1.451210e-02	k: 2086	n:150000
Cons ci ratio: 9.905201e-02	ci left: 9.821218e-03	ci right 1.085118e-02	k: 1549	n:150000
KS ci ratio: 2.401776e-02	ci left: 1.489925e-01	ci right 1.526210e-01	k: 22620	n:150000
FGD4   150000 perm   40 sec   (3732 perm/sec)   p_kst 1.508000e-01   p_cons 1.032667e-02   p_joint 1.390667e-02

Outputting figure to mutsig2_images.part000000000064/FGD4.2_2361_150000_0.1508_0.010327_0.013907.png
                gene_name: FGD4
               theta_stop: 0.099 
                    nperm: 150000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.010 
      ci_cons_bounds_left: 0.0098 
     ci_cons_bounds_right: 0.011 
                  p_joint: 0.014 
     ci_joint_bounds_left: 0.013 
    ci_joint_bounds_right: 0.015 

Current progress: 92 percent done.
FGF10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.490358e-01	ci left: 5.985938e-02	ci right 6.959607e-02	k: 646	n:10000
KS ci ratio: 3.898779e-03	ci left: 9.881795e-01	ci right 9.921271e-01	k: 9903	n:10000
FGF10   10000 perm   1 sec   (6980 perm/sec)   p_kst 9.903000e-01   p_cons 6.460000e-02   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 9.111760e-02	ci left: 8.082777e-02	ci right 8.859346e-02	k: 1693	n:20000
KS ci ratio: 2.785473e-03	ci left: 9.885759e-01	ci right 9.913789e-01	k: 19801	n:20000
FGF10   20000 perm   3 sec   (6060 perm/sec)   p_kst 9.900500e-01   p_cons 8.465000e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000064/FGF10.2_639_20000_0.99005_0.08465_1.png
                gene_name: FGF10
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.085 
      ci_cons_bounds_left: 0.081 
     ci_cons_bounds_right: 0.089 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
FGF14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.028637e-02	ci left: 1.513922e-01	ci right 1.658072e-01	k: 1585	n:10000
Cons ci ratio: 4.215870e-02	ci left: 4.537880e-01	ci right 4.734332e-01	k: 4636	n:10000
KS ci ratio: 1.465098e-01	ci left: 6.188659e-02	ci right 7.176758e-02	k: 667	n:10000
FGF14   10000 perm   1 sec   (6686 perm/sec)   p_kst 6.670000e-02   p_cons 4.636000e-01   p_joint 1.585000e-01

Joint ci ratio: 6.032916e-02	ci left: 1.690156e-01	ci right 1.795793e-01	k: 3485	n:20000
Cons ci ratio: 3.157765e-02	ci left: 4.282639e-01	ci right 4.420550e-01	k: 8703	n:20000
KS ci ratio: 1.061339e-01	ci left: 6.045150e-02	ci right 6.727598e-02	k: 1276	n:20000
FGF14   20000 perm   3 sec   (5820 perm/sec)   p_kst 6.380000e-02   p_cons 4.351500e-01   p_joint 1.742500e-01

Joint ci ratio: 6.007985e-02	ci left: 1.205207e-01	ci right 1.280189e-01	k: 3727	n:30000
Cons ci ratio: 2.576546e-02	ci left: 4.298792e-01	ci right 4.411333e-01	k: 13065	n:30000
KS ci ratio: 8.600098e-02	ci left: 6.197460e-02	ci right 6.757672e-02	k: 1942	n:30000
FGF14   30000 perm   5 sec   (5501 perm/sec)   p_kst 6.473333e-02   p_cons 4.355000e-01   p_joint 1.242333e-01

Outputting figure to mutsig2_images.part000000000064/FGF14.2_976_30000_0.064733_0.4355_0.12423.png
                gene_name: FGF14
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.065 
        ci_ks_bounds_left: 0.062 
       ci_ks_bounds_right: 0.068 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 96 percent done.
FGF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.816359e-01	ci left: 4.044604e-02	ci right 4.862195e-02	k: 444	n:10000
Cons ci ratio: 2.616291e-02	ci left: 6.826450e-01	ci right 7.008432e-01	k: 6918	n:10000
KS ci ratio: 2.669889e-01	ci left: 1.827990e-02	ci right 2.400381e-02	k: 210	n:10000
FGF2   10000 perm   2 sec   (6619 perm/sec)   p_kst 2.100000e-02   p_cons 6.918000e-01   p_joint 4.440000e-02

Joint ci ratio: 1.306038e-01	ci left: 4.027865e-02	ci right 4.595515e-02	k: 861	n:20000
Cons ci ratio: 1.848751e-02	ci left: 6.856497e-01	ci right 6.984944e-01	k: 13842	n:20000
KS ci ratio: 1.865486e-01	ci left: 1.958233e-02	ci right 2.365841e-02	k: 431	n:20000
FGF2   20000 perm   3 sec   (5847 perm/sec)   p_kst 2.155000e-02   p_cons 6.921000e-01   p_joint 4.305000e-02

Joint ci ratio: 1.075544e-01	ci left: 4.011513e-02	ci right 4.470736e-02	k: 1271	n:30000
Cons ci ratio: 1.512584e-02	ci left: 6.859706e-01	ci right 6.964590e-01	k: 20737	n:30000
KS ci ratio: 1.536558e-01	ci left: 1.959977e-02	ci right 2.289386e-02	k: 636	n:30000
FGF2   30000 perm   5 sec   (5553 perm/sec)   p_kst 2.120000e-02   p_cons 6.912333e-01   p_joint 4.236667e-02

Joint ci ratio: 6.139093e-02	ci left: 8.965319e-02	ci right 9.535612e-02	k: 3699	n:40000
Cons ci ratio: 1.313499e-02	ci left: 6.855168e-01	ci right 6.946056e-01	k: 27603	n:40000
KS ci ratio: 1.335801e-01	ci left: 1.966558e-02	ci right 2.250455e-02	k: 842	n:40000
FGF2   40000 perm   7 sec   (5349 perm/sec)   p_kst 2.105000e-02   p_cons 6.900750e-01   p_joint 9.247500e-02

Joint ci ratio: 5.480543e-02	ci left: 9.027044e-02	ci right 9.537694e-02	k: 4640	n:50000
Cons ci ratio: 1.175588e-02	ci left: 6.857245e-01	ci right 6.938535e-01	k: 34490	n:50000
KS ci ratio: 1.192326e-01	ci left: 1.989697e-02	ci right 2.243905e-02	k: 1057	n:50000
FGF2   50000 perm   10 sec   (5173 perm/sec)   p_kst 2.114000e-02   p_cons 6.898000e-01   p_joint 9.280000e-02

Joint ci ratio: 7.468383e-02	ci left: 4.225810e-02	ci right 4.555287e-02	k: 2633	n:60000
Cons ci ratio: 1.074123e-02	ci left: 6.856967e-01	ci right 6.931183e-01	k: 41365	n:60000
KS ci ratio: 1.078332e-01	ci left: 2.038673e-02	ci right 2.272653e-02	k: 1292	n:60000
FGF2   60000 perm   12 sec   (5030 perm/sec)   p_kst 2.153333e-02   p_cons 6.894167e-01   p_joint 4.388333e-02

Joint ci ratio: 6.896799e-02	ci left: 4.259080e-02	ci right 4.564714e-02	k: 3087	n:70000
Cons ci ratio: 9.944188e-03	ci left: 6.859858e-01	ci right 6.928557e-01	k: 48260	n:70000
KS ci ratio: 9.918110e-02	ci left: 2.074487e-02	ci right 2.292359e-02	k: 1527	n:70000
FGF2   70000 perm   14 sec   (4902 perm/sec)   p_kst 2.181429e-02   p_cons 6.894286e-01   p_joint 4.410000e-02

Outputting figure to mutsig2_images.part000000000064/FGF2.2_879_70000_0.021814_0.68943_0.0441.png
                gene_name: FGF2
               theta_stop: 0.099 
                    nperm: 70000 
                     p_ks: 0.022 
        ci_ks_bounds_left: 0.021 
       ci_ks_bounds_right: 0.023 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.044 
     ci_joint_bounds_left: 0.043 
    ci_joint_bounds_right: 0.046 

Current progress: 98 percent done.
FGF23
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.447565e-02	ci left: 5.540129e-01	ci right 5.735499e-01	k: 5638	n:10000
Cons ci ratio: 3.721421e-02	ci left: 5.160570e-01	ci right 5.357279e-01	k: 5259	n:10000
KS ci ratio: 1.291071e-01	ci left: 7.892613e-02	ci right 8.991738e-02	k: 843	n:10000
FGF23   10000 perm   1 sec   (7294 perm/sec)   p_kst 8.430000e-02   p_cons 5.259000e-01   p_joint 5.638000e-01

Joint ci ratio: 8.857097e-02	ci left: 8.523565e-02	ci right 9.318425e-02	k: 1783	n:20000
Cons ci ratio: 2.616888e-02	ci left: 5.217532e-01	ci right 5.356385e-01	k: 10574	n:20000
KS ci ratio: 9.168046e-02	ci left: 7.989763e-02	ci right 8.762389e-02	k: 1674	n:20000
FGF23   20000 perm   3 sec   (6245 perm/sec)   p_kst 8.370000e-02   p_cons 5.287000e-01   p_joint 8.915000e-02

Outputting figure to mutsig2_images.part000000000064/FGF23.2_768_20000_0.0837_0.5287_0.08915.png
                gene_name: FGF23
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.084 
        ci_ks_bounds_left: 0.080 
       ci_ks_bounds_right: 0.088 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.089 
     ci_joint_bounds_left: 0.085 
    ci_joint_bounds_right: 0.093 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000064
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 64 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1711>
Subject: Job 8004081: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1711>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000065> was used as the working directory.
Started at Sun Nov 11 15:05:54 2012
Results reported at Sun Nov 11 15:18:31 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000065.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000065.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 65  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000065.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    802.91 sec.
    Max Memory :      4744 MB
    Max Swap   :      7068 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
65
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 65
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 65: processing genes 5791 - 5881
Calculating significance of each gene.
Using projection method.
5791	FGF4	1
5792	FGF5	2.967391e-01
5793	FGF6	1.619868e-01
5794	FGF7	1
5795	FGF8	4.830023e-01
5796	FGF9	1
5797	FGFBP1	5.432549e-01
5798	FGFBP2	3.708129e-01
5799	FGFBP3	1
5800	FGFR1	9.649600e-01
5801	FGFR1OP	1
5802	FGFR1OP2	1
5803	FGFR2	3.959617e-01
5804	FGFR3	2.737179e-01
5805	FGFR4	8.803579e-01
5806	FGFRL1	7.507350e-02
5807	FGG	4.039481e-01
5808	FGGY	5.913170e-01
5809	FGL1	1
5810	FGL2	7.399253e-01
5811	FGR	1
5812	FH	3.636534e-01
5813	FHDC1	5.041472e-01
5814	FHIT	1
5815	FHL1	5.543075e-01
5816	FHL2	4.065953e-01
5817	FHL3	6.889230e-01
5818	FHL5	1
5819	FHOD1	9.455951e-01
5820	FHOD3	8.177175e-01
5821	FIBCD1	1
5822	FIBIN	1
5823	FIBP	1
5824	FICD	1
5825	FIG4	3.872597e-01
5826	FIGF	4.914092e-01
5827	FIGLA	1.807487e-01
5828	FIGN	1
5829	FIGNL1	7.338804e-01
5830	FILIP1	8.659584e-01
5831	FILIP1L	5.729620e-01
5832	FIP1L1	1
5833	FIS1	1
5834	FITM1	5.687515e-01
5835	FITM2	1
5836	FIZ1	2.372330e-01
5837	FJX1	1
5838	FKBP10	7.275562e-01
5839	FKBP11	1
5840	FKBP14	5.416389e-01
5841	FKBP15	9.015770e-01
5842	FKBP1A	1
5843	FKBP1B	1.875539e-01
5844	FKBP2	4.130934e-01
5845	FKBP3	5.082923e-01
5846	FKBP4	1
5847	FKBP5	1
5848	FKBP6	1
5849	FKBP7	3.707155e-01
5850	FKBP8	7.773898e-01
5851	FKBP9	9.183906e-01
5852	FKBPL	5.906099e-01
5853	FKRP	1
5854	FKSG83	1
5855	FKTN	1
5856	FLAD1	7.549160e-01
5857	FLCN	1
5858	FLG	1
5859	FLG2	9.998625e-01
5860	FLI1	1.455979e-02
5861	FLII	9.038145e-01
5862	FLJ10357	1
5863	FLJ35220	1
5864	FLJ37543	1
5865	FLJ43860	9.755412e-01
5866	FLJ44635	1
5867	FLJ46321	9.943904e-01
5868	FLNA	9.964109e-01
5869	FLNB	9.999760e-01
5870	FLNC	9.997863e-01
5871	FLOT1	1
5872	FLOT2	6.630286e-01
5873	FLRT1	8.148218e-01
5874	FLRT2	6.989299e-02
5875	FLRT3	7.154148e-01
5876	FLT1	2.476246e-01
5877	FLT3	1
5878	FLT3LG	1
5879	FLT4	9.927858e-01
5880	FLVCR1	8.415050e-01
5881	FLVCR2	1
Done

Running MutSig 2:
Scatter job 65: processing genes 5791 - 5881
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
FLG
Processing conservation and coverage...
81% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.612086e-02	ci left: 2.015594e-01	ci right 2.176102e-01	k: 2095	n:10000
Cons ci ratio: 1.107643e-01	ci left: 1.051021e-01	ci right 1.175253e-01	k: 1112	n:10000
KS ci ratio: 5.022109e-02	ci left: 3.689804e-01	ci right 3.880904e-01	k: 3785	n:10000
FLG   10000 perm   4 sec   (2645 perm/sec)   p_kst 3.785000e-01   p_cons 1.112000e-01   p_joint 2.095000e-01

Joint ci ratio: 5.961589e-02	ci left: 1.724244e-01	ci right 1.830695e-01	k: 3554	n:20000
Cons ci ratio: 7.999126e-02	ci left: 1.028957e-01	ci right 1.115189e-01	k: 2143	n:20000
KS ci ratio: 3.567049e-02	ci left: 3.697287e-01	ci right 3.832072e-01	k: 7529	n:20000
FLG   20000 perm   10 sec   (1998 perm/sec)   p_kst 3.764500e-01   p_cons 1.071500e-01   p_joint 1.777000e-01

Outputting figure to mutsig2_images.part000000000065/FLG.45_12194_20000_0.37645_0.10715_0.1777.png
                gene_name: FLG
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 3 percent done.
FLG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.265993e-01	ci left: 1.188149e-02	ci right 1.660771e-02	k: 141	n:10000
Cons ci ratio: 6.521613e-02	ci left: 2.566662e-01	ci right 2.740706e-01	k: 2653	n:10000
KS ci ratio: 7.029257e-01	ci left: 2.024975e-03	ci right 4.279939e-03	k: 30	n:10000
FLG2   10000 perm   3 sec   (3607 perm/sec)   p_kst 3.000000e-03   p_cons 2.653000e-01   p_joint 1.410000e-02

Joint ci ratio: 3.136318e-01	ci left: 6.535562e-03	ci right 9.010769e-03	k: 154	n:20000
Cons ci ratio: 4.599124e-02	ci left: 2.602826e-01	ci right 2.725854e-01	k: 5328	n:20000
KS ci ratio: 4.710861e-01	ci left: 2.641171e-03	ci right 4.308347e-03	k: 68	n:20000
FLG2   20000 perm   6 sec   (3321 perm/sec)   p_kst 3.400000e-03   p_cons 2.664000e-01   p_joint 7.700000e-03

Joint ci ratio: 3.150656e-01	ci left: 4.325514e-03	ci right 5.972562e-03	k: 153	n:30000
Cons ci ratio: 3.737170e-02	ci left: 2.632922e-01	ci right 2.733527e-01	k: 8049	n:30000
KS ci ratio: 3.913396e-01	ci left: 2.682862e-03	ci right 4.016189e-03	k: 99	n:30000
FLG2   30000 perm   9 sec   (3212 perm/sec)   p_kst 3.300000e-03   p_cons 2.683000e-01   p_joint 5.100000e-03

Joint ci ratio: 3.514760e-01	ci left: 2.556258e-03	ci right 3.667820e-03	k: 123	n:40000
Cons ci ratio: 3.239444e-02	ci left: 2.636142e-01	ci right 2.723195e-01	k: 10718	n:40000
KS ci ratio: 3.529063e-01	ci left: 2.533465e-03	ci right 3.640626e-03	k: 122	n:40000
FLG2   40000 perm   13 sec   (3141 perm/sec)   p_kst 3.050000e-03   p_cons 2.679500e-01   p_joint 3.075000e-03

Joint ci ratio: 2.027578e-01	ci left: 6.667492e-03	ci right 8.190535e-03	k: 370	n:50000
Cons ci ratio: 2.952311e-02	ci left: 2.568161e-01	ci right 2.645317e-01	k: 13033	n:50000
KS ci ratio: 3.164248e-01	ci left: 2.576504e-03	ci right 3.562591e-03	k: 152	n:50000
FLG2   50000 perm   16 sec   (3085 perm/sec)   p_kst 3.040000e-03   p_cons 2.606600e-01   p_joint 7.400000e-03

Joint ci ratio: 2.158516e-01	ci left: 4.876598e-03	ci right 6.072002e-03	k: 327	n:60000
Cons ci ratio: 2.686229e-02	ci left: 2.584184e-01	ci right 2.654713e-01	k: 15716	n:60000
KS ci ratio: 2.925548e-01	ci left: 2.547355e-03	ci right 3.435134e-03	k: 178	n:60000
FLG2   60000 perm   20 sec   (3038 perm/sec)   p_kst 2.966667e-03   p_cons 2.619333e-01   p_joint 5.450000e-03

Joint ci ratio: 2.057816e-01	ci left: 4.626427e-03	ci right 5.700934e-03	k: 360	n:70000
Cons ci ratio: 2.492906e-02	ci left: 2.577636e-01	ci right 2.642848e-01	k: 18271	n:70000
KS ci ratio: 2.796057e-01	ci left: 2.408862e-03	ci right 3.204670e-03	k: 195	n:70000
FLG2   70000 perm   23 sec   (2997 perm/sec)   p_kst 2.785714e-03   p_cons 2.610143e-01   p_joint 5.142857e-03

Joint ci ratio: 1.395814e-01	ci left: 9.080683e-03	ci right 1.045522e-02	k: 780	n:80000
Cons ci ratio: 2.331243e-02	ci left: 2.580837e-01	ci right 2.641837e-01	k: 20890	n:80000
KS ci ratio: 2.621349e-01	ci left: 2.422357e-03	ci right 3.164430e-03	k: 222	n:80000
FLG2   80000 perm   27 sec   (2960 perm/sec)   p_kst 2.775000e-03   p_cons 2.611250e-01   p_joint 9.750000e-03

Joint ci ratio: 1.393881e-01	ci left: 8.103600e-03	ci right 9.328381e-03	k: 783	n:90000
Cons ci ratio: 2.196802e-02	ci left: 2.584540e-01	ci right 2.642058e-01	k: 23519	n:90000
KS ci ratio: 2.490798e-01	ci left: 2.402796e-03	ci right 3.096539e-03	k: 246	n:90000
FLG2   90000 perm   31 sec   (2918 perm/sec)   p_kst 2.733333e-03   p_cons 2.613222e-01   p_joint 8.700000e-03

Joint ci ratio: 1.370047e-01	ci left: 7.563412e-03	ci right 8.685399e-03	k: 811	n:100000
Cons ci ratio: 2.079348e-02	ci left: 2.594759e-01	ci right 2.649379e-01	k: 26220	n:100000
KS ci ratio: 2.360585e-01	ci left: 2.425511e-03	ci right 3.083857e-03	k: 274	n:100000
FLG2   100000 perm   35 sec   (2882 perm/sec)   p_kst 2.740000e-03   p_cons 2.622000e-01   p_joint 8.110000e-03

Joint ci ratio: 1.448027e-01	ci left: 6.138759e-03	ci right 7.105712e-03	k: 727	n:110000
Cons ci ratio: 1.984311e-02	ci left: 2.592673e-01	ci right 2.644725e-01	k: 28805	n:110000
KS ci ratio: 2.237786e-01	ci left: 2.470612e-03	ci right 3.101511e-03	k: 305	n:110000
FLG2   110000 perm   39 sec   (2845 perm/sec)   p_kst 2.772727e-03   p_cons 2.618636e-01   p_joint 6.609091e-03

Joint ci ratio: 2.356838e-01	ci left: 2.029050e-03	ci right 2.578779e-03	k: 275	n:120000
Cons ci ratio: 1.825999e-02	ci left: 2.749429e-01	ci right 2.800179e-01	k: 33297	n:120000
KS ci ratio: 2.116662e-01	ci left: 2.548390e-03	ci right 3.159362e-03	k: 341	n:120000
FLG2   120000 perm   43 sec   (2812 perm/sec)   p_kst 2.841667e-03   p_cons 2.774750e-01   p_joint 2.291667e-03

Joint ci ratio: 1.387775e-01	ci left: 5.676509e-03	ci right 6.530363e-03	k: 792	n:130000
Cons ci ratio: 1.754324e-02	ci left: 2.750518e-01	ci right 2.799274e-01	k: 36073	n:130000
KS ci ratio: 2.032249e-01	ci left: 2.563855e-03	ci right 3.150977e-03	k: 370	n:130000
FLG2   130000 perm   47 sec   (2776 perm/sec)   p_kst 2.846154e-03   p_cons 2.774846e-01   p_joint 6.092308e-03

Joint ci ratio: 1.359081e-01	ci left: 5.505523e-03	ci right 6.315147e-03	k: 826	n:140000
Cons ci ratio: 1.688942e-02	ci left: 2.755118e-01	ci right 2.802117e-01	k: 38900	n:140000
KS ci ratio: 1.949872e-01	ci left: 2.597907e-03	ci right 3.165850e-03	k: 402	n:140000
FLG2   140000 perm   51 sec   (2743 perm/sec)   p_kst 2.871429e-03   p_cons 2.778571e-01   p_joint 5.900000e-03

Joint ci ratio: 1.609288e-01	ci left: 3.622864e-03	ci right 4.263212e-03	k: 590	n:150000
Cons ci ratio: 1.630796e-02	ci left: 2.758069e-01	ci right 2.803483e-01	k: 41711	n:150000
KS ci ratio: 1.830897e-01	ci left: 2.767713e-03	ci right 3.331767e-03	k: 456	n:150000
FLG2   150000 perm   55 sec   (2713 perm/sec)   p_kst 3.040000e-03   p_cons 2.780733e-01   p_joint 3.933333e-03

Joint ci ratio: 1.598663e-01	ci left: 3.444402e-03	ci right 4.048800e-03	k: 598	n:160000
Cons ci ratio: 1.577018e-02	ci left: 2.763855e-01	ci right 2.807850e-01	k: 44573	n:160000
KS ci ratio: 1.768156e-01	ci left: 2.791695e-03	ci right 3.339057e-03	k: 489	n:160000
FLG2   160000 perm   60 sec   (2683 perm/sec)   p_kst 3.056250e-03   p_cons 2.785813e-01   p_joint 3.737500e-03

Joint ci ratio: 1.700078e-01	ci left: 2.852570e-03	ci right 3.388127e-03	k: 529	n:170000
Cons ci ratio: 1.531028e-02	ci left: 2.761646e-01	ci right 2.804312e-01	k: 47310	n:170000
KS ci ratio: 1.716398e-01	ci left: 2.796254e-03	ci right 3.326799e-03	k: 519	n:170000
FLG2   170000 perm   64 sec   (2654 perm/sec)   p_kst 3.052941e-03   p_cons 2.782941e-01   p_joint 3.111765e-03

Joint ci ratio: 1.700226e-01	ci left: 2.694075e-03	ci right 3.199922e-03	k: 529	n:180000
Cons ci ratio: 1.489395e-02	ci left: 2.758203e-01	ci right 2.799647e-01	k: 50020	n:180000
KS ci ratio: 1.670457e-01	ci left: 2.795190e-03	ci right 3.309910e-03	k: 548	n:180000
FLG2   180000 perm   68 sec   (2628 perm/sec)   p_kst 3.044444e-03   p_cons 2.778889e-01   p_joint 2.938889e-03

Joint ci ratio: 1.697150e-01	ci left: 2.562345e-03	ci right 3.042498e-03	k: 531	n:190000
Cons ci ratio: 1.448340e-02	ci left: 2.762436e-01	ci right 2.802789e-01	k: 52869	n:190000
KS ci ratio: 1.618219e-01	ci left: 2.829757e-03	ci right 3.332962e-03	k: 584	n:190000
FLG2   190000 perm   73 sec   (2601 perm/sec)   p_kst 3.073684e-03   p_cons 2.782579e-01   p_joint 2.794737e-03

Joint ci ratio: 1.664643e-01	ci left: 2.534808e-03	ci right 2.999790e-03	k: 552	n:200000
Cons ci ratio: 1.412329e-02	ci left: 2.761071e-01	ci right 2.800393e-01	k: 55614	n:200000
KS ci ratio: 1.574413e-01	ci left: 2.846680e-03	ci right 3.337897e-03	k: 617	n:200000
FLG2   200000 perm   78 sec   (2575 perm/sec)   p_kst 3.085000e-03   p_cons 2.780700e-01   p_joint 2.760000e-03

Joint ci ratio: 1.664753e-01	ci left: 2.414090e-03	ci right 2.856959e-03	k: 552	n:210000
Cons ci ratio: 1.377961e-02	ci left: 2.762509e-01	ci right 2.800886e-01	k: 58415	n:210000
KS ci ratio: 1.539926e-01	ci left: 2.839261e-03	ci right 3.317475e-03	k: 645	n:210000
FLG2   210000 perm   82 sec   (2550 perm/sec)   p_kst 3.071429e-03   p_cons 2.781667e-01   p_joint 2.628571e-03

Joint ci ratio: 1.357259e-01	ci left: 3.520832e-03	ci right 4.037832e-03	k: 830	n:220000
Cons ci ratio: 1.346001e-02	ci left: 2.763780e-01	ci right 2.801278e-01	k: 61215	n:220000
KS ci ratio: 1.486734e-01	ci left: 2.915761e-03	ci right 3.388389e-03	k: 692	n:220000
FLG2   220000 perm   87 sec   (2526 perm/sec)   p_kst 3.145455e-03   p_cons 2.782500e-01   p_joint 3.772727e-03

Joint ci ratio: 1.358192e-01	ci left: 3.363534e-03	ci right 3.857802e-03	k: 829	n:230000
Cons ci ratio: 1.316622e-02	ci left: 2.763563e-01	ci right 2.800232e-01	k: 63983	n:230000
KS ci ratio: 1.449546e-01	ci left: 2.939764e-03	ci right 3.403332e-03	k: 728	n:230000
FLG2   230000 perm   93 sec   (2479 perm/sec)   p_kst 3.165217e-03   p_cons 2.781870e-01   p_joint 3.604348e-03

Joint ci ratio: 1.421555e-01	ci left: 2.933766e-03	ci right 3.386698e-03	k: 757	n:240000
Cons ci ratio: 1.289435e-02	ci left: 2.762290e-01	ci right 2.798180e-01	k: 66725	n:240000
KS ci ratio: 1.417807e-01	ci left: 2.949843e-03	ci right 3.403954e-03	k: 761	n:240000
FLG2   240000 perm   101 sec   (2368 perm/sec)   p_kst 3.170833e-03   p_cons 2.780208e-01   p_joint 3.154167e-03

Joint ci ratio: 1.447740e-01	ci left: 2.712269e-03	ci right 3.139384e-03	k: 730	n:250000
Cons ci ratio: 1.263399e-02	ci left: 2.762604e-01	ci right 2.797768e-01	k: 69504	n:250000
KS ci ratio: 1.390700e-01	ci left: 2.947633e-03	ci right 3.392009e-03	k: 791	n:250000
FLG2   250000 perm   106 sec   (2348 perm/sec)   p_kst 3.164000e-03   p_cons 2.780160e-01   p_joint 2.920000e-03

Joint ci ratio: 1.427405e-01	ci left: 2.685813e-03	ci right 3.102314e-03	k: 751	n:260000
Cons ci ratio: 1.239508e-02	ci left: 2.760865e-01	ci right 2.795338e-01	k: 72230	n:260000
KS ci ratio: 1.368435e-01	ci left: 2.930809e-03	ci right 3.364999e-03	k: 817	n:260000
FLG2   260000 perm   112 sec   (2329 perm/sec)   p_kst 3.142308e-03   p_cons 2.778077e-01   p_joint 2.888462e-03

Joint ci ratio: 1.397963e-01	ci left: 2.700669e-03	ci right 3.110117e-03	k: 783	n:270000
Cons ci ratio: 1.215980e-02	ci left: 2.762367e-01	ci right 2.796199e-01	k: 75040	n:270000
KS ci ratio: 1.340058e-01	ci left: 2.947500e-03	ci right 3.374386e-03	k: 852	n:270000
FLG2   270000 perm   117 sec   (2312 perm/sec)   p_kst 3.155556e-03   p_cons 2.779259e-01   p_joint 2.900000e-03

Joint ci ratio: 1.065105e-01	ci left: 4.557778e-03	ci right 5.073982e-03	k: 1347	n:280000
Cons ci ratio: 1.193710e-02	ci left: 2.763874e-01	ci right 2.797100e-01	k: 77853	n:280000
KS ci ratio: 1.317101e-01	ci left: 2.945814e-03	ci right 3.364575e-03	k: 882	n:280000
FLG2   280000 perm   122 sec   (2295 perm/sec)   p_kst 3.150000e-03   p_cons 2.780464e-01   p_joint 4.810714e-03

Joint ci ratio: 1.067983e-01	ci left: 4.377097e-03	ci right 4.874261e-03	k: 1340	n:290000
Cons ci ratio: 1.173337e-02	ci left: 2.762839e-01	ci right 2.795481e-01	k: 80595	n:290000
KS ci ratio: 1.305363e-01	ci left: 2.897592e-03	ci right 3.305542e-03	k: 898	n:290000
FLG2   290000 perm   127 sec   (2277 perm/sec)   p_kst 3.096552e-03   p_cons 2.779138e-01   p_joint 4.620690e-03

Joint ci ratio: 1.055876e-01	ci left: 4.331778e-03	ci right 4.817869e-03	k: 1371	n:300000
Cons ci ratio: 1.153828e-02	ci left: 2.762376e-01	ci right 2.794467e-01	k: 83352	n:300000
KS ci ratio: 1.282731e-01	ci left: 2.904220e-03	ci right 3.305474e-03	k: 930	n:300000
FLG2   300000 perm   133 sec   (2257 perm/sec)   p_kst 3.100000e-03   p_cons 2.778400e-01   p_joint 4.570000e-03

Joint ci ratio: 1.098590e-01	ci left: 3.865543e-03	ci right 4.317999e-03	k: 1267	n:310000
Cons ci ratio: 1.134823e-02	ci left: 2.763493e-01	ci right 2.795065e-01	k: 86157	n:310000
KS ci ratio: 1.259271e-01	ci left: 2.919850e-03	ci right 3.315336e-03	k: 965	n:310000
FLG2   310000 perm   138 sec   (2239 perm/sec)   p_kst 3.112903e-03   p_cons 2.779258e-01   p_joint 4.087097e-03

Joint ci ratio: 1.105243e-01	ci left: 3.699144e-03	ci right 4.134915e-03	k: 1252	n:320000
Cons ci ratio: 1.117284e-02	ci left: 2.762548e-01	ci right 2.793617e-01	k: 88898	n:320000
KS ci ratio: 1.240788e-01	ci left: 2.916396e-03	ci right 3.305189e-03	k: 994	n:320000
FLG2   320000 perm   144 sec   (2223 perm/sec)   p_kst 3.106250e-03   p_cons 2.778062e-01   p_joint 3.912500e-03

Joint ci ratio: 1.098292e-01	ci left: 3.634191e-03	ci right 4.059443e-03	k: 1268	n:330000
Cons ci ratio: 1.100084e-02	ci left: 2.763297e-01	ci right 2.793894e-01	k: 91693	n:330000
KS ci ratio: 1.226102e-01	ci left: 2.898502e-03	ci right 3.280004e-03	k: 1018	n:330000
FLG2   330000 perm   150 sec   (2207 perm/sec)   p_kst 3.084848e-03   p_cons 2.778576e-01   p_joint 3.842424e-03

Joint ci ratio: 1.087231e-01	ci left: 3.601680e-03	ci right 4.018612e-03	k: 1294	n:340000
Cons ci ratio: 1.083330e-02	ci left: 2.765209e-01	ci right 2.795358e-01	k: 94529	n:340000
KS ci ratio: 1.204993e-01	ci left: 2.915916e-03	ci right 3.292632e-03	k: 1054	n:340000
FLG2   340000 perm   155 sec   (2190 perm/sec)   p_kst 3.100000e-03   p_cons 2.780265e-01   p_joint 3.805882e-03

Joint ci ratio: 1.027662e-01	ci left: 3.927179e-03	ci right 4.355380e-03	k: 1448	n:350000
Cons ci ratio: 1.067858e-02	ci left: 2.764991e-01	ci right 2.794703e-01	k: 97294	n:350000
KS ci ratio: 1.190422e-01	ci left: 2.904663e-03	ci right 3.275068e-03	k: 1080	n:350000
FLG2   350000 perm   161 sec   (2173 perm/sec)   p_kst 3.085714e-03   p_cons 2.779829e-01   p_joint 4.137143e-03

Joint ci ratio: 1.043009e-01	ci left: 3.704423e-03	ci right 4.114737e-03	k: 1406	n:360000
Cons ci ratio: 1.052644e-02	ci left: 2.766257e-01	ci right 2.795557e-01	k: 100112	n:360000
KS ci ratio: 1.171599e-01	ci left: 2.918329e-03	ci right 3.284186e-03	k: 1115	n:360000
FLG2   360000 perm   167 sec   (2149 perm/sec)   p_kst 3.097222e-03   p_cons 2.780889e-01   p_joint 3.905556e-03

Joint ci ratio: 1.030997e-01	ci left: 3.691178e-03	ci right 4.095031e-03	k: 1439	n:370000
Cons ci ratio: 1.038119e-02	ci left: 2.767241e-01	ci right 2.796145e-01	k: 102922	n:370000
KS ci ratio: 1.152638e-01	ci left: 2.936550e-03	ci right 3.298328e-03	k: 1152	n:370000
FLG2   370000 perm   174 sec   (2131 perm/sec)   p_kst 3.113514e-03   p_cons 2.781676e-01   p_joint 3.889189e-03

Joint ci ratio: 1.020783e-01	ci left: 3.668397e-03	ci right 4.065543e-03	k: 1468	n:380000
Cons ci ratio: 1.024346e-02	ci left: 2.767520e-01	ci right 2.796040e-01	k: 105707	n:380000
KS ci ratio: 1.136006e-01	ci left: 2.946186e-03	ci right 3.303562e-03	k: 1186	n:380000
FLG2   380000 perm   180 sec   (2113 perm/sec)   p_kst 3.121053e-03   p_cons 2.781763e-01   p_joint 3.863158e-03

Joint ci ratio: 1.016330e-01	ci left: 3.606814e-03	ci right 3.995487e-03	k: 1481	n:390000
Cons ci ratio: 1.011224e-02	ci left: 2.767325e-01	ci right 2.795477e-01	k: 108474	n:390000
KS ci ratio: 1.125170e-01	ci left: 2.927948e-03	ci right 3.279499e-03	k: 1209	n:390000
FLG2   390000 perm   186 sec   (2097 perm/sec)   p_kst 3.100000e-03   p_cons 2.781385e-01   p_joint 3.797436e-03

Joint ci ratio: 1.018796e-01	ci left: 3.499579e-03	ci right 3.877667e-03	k: 1474	n:400000
Cons ci ratio: 9.988730e-03	ci left: 2.766020e-01	ci right 2.793812e-01	k: 111196	n:400000
KS ci ratio: 1.109683e-01	ci left: 2.937374e-03	ci right 3.284885e-03	k: 1243	n:400000
FLG2   400000 perm   193 sec   (2076 perm/sec)   p_kst 3.107500e-03   p_cons 2.779900e-01   p_joint 3.685000e-03

Joint ci ratio: 1.008263e-01	ci left: 3.487916e-03	ci right 3.860616e-03	k: 1505	n:410000
Cons ci ratio: 9.863702e-03	ci left: 2.767191e-01	ci right 2.794645e-01	k: 114017	n:410000
KS ci ratio: 1.094389e-01	ci left: 2.948745e-03	ci right 3.292483e-03	k: 1278	n:410000
FLG2   410000 perm   199 sec   (2061 perm/sec)   p_kst 3.117073e-03   p_cons 2.780902e-01   p_joint 3.670732e-03

Joint ci ratio: 8.775396e-02	ci left: 4.521003e-03	ci right 4.938256e-03	k: 1985	n:420000
Cons ci ratio: 9.751579e-03	ci left: 2.764885e-01	ci right 2.792003e-01	k: 116694	n:420000
KS ci ratio: 1.085946e-01	ci left: 2.924855e-03	ci right 3.263010e-03	k: 1298	n:420000
FLG2   420000 perm   205 sec   (2046 perm/sec)   p_kst 3.090476e-03   p_cons 2.778429e-01   p_joint 4.726190e-03

Joint ci ratio: 8.902871e-02	ci left: 4.288487e-03	ci right 4.690328e-03	k: 1929	n:430000
Cons ci ratio: 9.639391e-03	ci left: 2.764267e-01	ci right 2.791065e-01	k: 119439	n:430000
KS ci ratio: 1.075652e-01	ci left: 2.913402e-03	ci right 3.246838e-03	k: 1323	n:430000
FLG2   430000 perm   212 sec   (2031 perm/sec)   p_kst 3.076744e-03   p_cons 2.777651e-01   p_joint 4.486047e-03

Joint ci ratio: 8.147025e-02	ci left: 5.020784e-03	ci right 5.449408e-03	k: 2302	n:440000
Cons ci ratio: 9.531203e-03	ci left: 2.763588e-01	ci right 2.790077e-01	k: 122180	n:440000
KS ci ratio: 1.066836e-01	ci left: 2.895848e-03	ci right 3.224387e-03	k: 1345	n:440000
FLG2   440000 perm   218 sec   (2017 perm/sec)   p_kst 3.056818e-03   p_cons 2.776818e-01   p_joint 5.231818e-03

Joint ci ratio: 8.124485e-02	ci left: 4.937503e-03	ci right 5.357796e-03	k: 2315	n:450000
Cons ci ratio: 9.427517e-03	ci left: 2.762542e-01	ci right 2.788731e-01	k: 124903	n:450000
KS ci ratio: 1.058621e-01	ci left: 2.876920e-03	ci right 3.200642e-03	k: 1366	n:450000
FLG2   450000 perm   225 sec   (2001 perm/sec)   p_kst 3.035556e-03   p_cons 2.775622e-01   p_joint 5.144444e-03

Joint ci ratio: 8.043321e-02	ci left: 4.930274e-03	ci right 5.345562e-03	k: 2362	n:460000
Cons ci ratio: 9.325778e-03	ci left: 2.762129e-01	ci right 2.788030e-01	k: 127653	n:460000
KS ci ratio: 1.050593e-01	ci left: 2.858825e-03	ci right 3.177921e-03	k: 1387	n:460000
FLG2   460000 perm   232 sec   (1987 perm/sec)   p_kst 3.015217e-03   p_cons 2.775065e-01   p_joint 5.134783e-03

Joint ci ratio: 8.305696e-02	ci left: 4.521045e-03	ci right 4.914886e-03	k: 2216	n:470000
Cons ci ratio: 9.230054e-03	ci left: 2.760523e-01	ci right 2.786142e-01	k: 130346	n:470000
KS ci ratio: 1.040525e-01	ci left: 2.853943e-03	ci right 3.169254e-03	k: 1414	n:470000
FLG2   470000 perm   238 sec   (1972 perm/sec)   p_kst 3.008511e-03   p_cons 2.773319e-01   p_joint 4.714894e-03

Joint ci ratio: 8.390165e-02	ci left: 4.337086e-03	ci right 4.718933e-03	k: 2172	n:480000
Cons ci ratio: 9.135364e-03	ci left: 2.759798e-01	ci right 2.785146e-01	k: 133078	n:480000
KS ci ratio: 1.031100e-01	ci left: 2.847249e-03	ci right 3.158798e-03	k: 1440	n:480000
FLG2   480000 perm   245 sec   (1958 perm/sec)   p_kst 3.000000e-03   p_cons 2.772458e-01   p_joint 4.525000e-03

Joint ci ratio: 8.332972e-02	ci left: 4.308516e-03	ci right 4.685135e-03	k: 2202	n:490000
Cons ci ratio: 9.042655e-03	ci left: 2.759490e-01	ci right 2.784577e-01	k: 135829	n:490000
KS ci ratio: 1.022976e-01	ci left: 2.834874e-03	ci right 3.142478e-03	k: 1463	n:490000
FLG2   490000 perm   252 sec   (1945 perm/sec)   p_kst 2.985714e-03   p_cons 2.772020e-01   p_joint 4.493878e-03

Joint ci ratio: 8.304997e-02	ci left: 4.251716e-03	ci right 4.622062e-03	k: 2217	n:500000
Cons ci ratio: 8.952444e-03	ci left: 2.759316e-01	ci right 2.784150e-01	k: 138586	n:500000
KS ci ratio: 1.011634e-01	ci left: 2.842498e-03	ci right 3.147307e-03	k: 1496	n:500000
FLG2   500000 perm   259 sec   (1933 perm/sec)   p_kst 2.992000e-03   p_cons 2.771720e-01   p_joint 4.434000e-03

Joint ci ratio: 8.518194e-02	ci left: 3.959093e-03	ci right 4.313243e-03	k: 2108	n:510000
Cons ci ratio: 8.862538e-03	ci left: 2.760208e-01	ci right 2.784798e-01	k: 141397	n:510000
KS ci ratio: 1.002636e-01	ci left: 2.838370e-03	ci right 3.139869e-03	k: 1523	n:510000
FLG2   510000 perm   266 sec   (1920 perm/sec)   p_kst 2.986275e-03   p_cons 2.772490e-01   p_joint 4.133333e-03

Joint ci ratio: 8.588323e-02	ci left: 3.818959e-03	ci right 4.163527e-03	k: 2074	n:520000
Cons ci ratio: 8.774318e-03	ci left: 2.761508e-01	ci right 2.785863e-01	k: 144231	n:520000
KS ci ratio: 9.919509e-02	ci left: 2.845665e-03	ci right 3.144531e-03	k: 1556	n:520000
FLG2   520000 perm   273 sec   (1907 perm/sec)   p_kst 2.992308e-03   p_cons 2.773673e-01   p_joint 3.988462e-03

Outputting figure to mutsig2_images.part000000000065/FLG2.17_7184_520000_0.0029923_0.27737_0.0039885.png
                gene_name: FLG2
               theta_stop: 0.099 
                    nperm: 520000 
                     p_ks: 0.0030 
        ci_ks_bounds_left: 0.0028 
       ci_ks_bounds_right: 0.0031 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.0040 
     ci_joint_bounds_left: 0.0038 
    ci_joint_bounds_right: 0.0042 

Current progress: 5 percent done.
FLNC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.219546e-02	ci left: 2.753738e-01	ci right 2.931520e-01	k: 2842	n:10000
Cons ci ratio: 1.700177e-02	ci left: 8.343964e-01	ci right 8.488040e-01	k: 8417	n:10000
KS ci ratio: 9.110698e-02	ci left: 1.490372e-01	ci right 1.633637e-01	k: 1561	n:10000
FLNC   10000 perm   3 sec   (3462 perm/sec)   p_kst 1.561000e-01   p_cons 8.417000e-01   p_joint 2.842000e-01

Outputting figure to mutsig2_images.part000000000065/FLNC.16_8370_10000_0.1561_0.8417_0.2842.png
                gene_name: FLNC
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 8 percent done.
FLJ46321
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.322914e-02	ci left: 7.313849e-01	ci right 7.486751e-01	k: 7401	n:10000
Cons ci ratio: 4.430567e-02	ci left: 4.292423e-01	ci right 4.487932e-01	k: 4390	n:10000
KS ci ratio: 2.975552e-02	ci left: 6.248728e-01	ci right 6.438489e-01	k: 6344	n:10000
FLJ46321   10000 perm   2 sec   (4093 perm/sec)   p_kst 6.344000e-01   p_cons 4.390000e-01   p_joint 7.401000e-01

Outputting figure to mutsig2_images.part000000000065/FLJ46321.14_4747_10000_0.6344_0.439_0.7401.png
                gene_name: FLJ46321
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 10 percent done.
FLNA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.903611e-02	ci left: 3.802244e-01	ci right 3.994398e-01	k: 3898	n:10000
Cons ci ratio: 1.351440e-01	ci left: 7.233299e-02	ci right 8.291462e-02	k: 775	n:10000
KS ci ratio: 1.796173e-02	ci left: 8.189333e-01	ci right 8.338761e-01	k: 8265	n:10000
FLNA   10000 perm   3 sec   (3277 perm/sec)   p_kst 8.265000e-01   p_cons 7.750000e-02   p_joint 3.898000e-01

Joint ci ratio: 2.920297e-02	ci left: 4.669591e-01	ci right 4.808484e-01	k: 9478	n:20000
Cons ci ratio: 9.415636e-02	ci left: 7.598287e-02	ci right 8.353984e-02	k: 1594	n:20000
KS ci ratio: 1.266936e-02	ci left: 8.218878e-01	ci right 8.324169e-01	k: 16544	n:20000
FLNA   20000 perm   7 sec   (3047 perm/sec)   p_kst 8.272000e-01   p_cons 7.970000e-02   p_joint 4.739000e-01

Outputting figure to mutsig2_images.part000000000065/FLNA.14_8132_20000_0.8272_0.0797_0.4739.png
                gene_name: FLNA
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.080 
      ci_cons_bounds_left: 0.076 
     ci_cons_bounds_right: 0.084 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.48 

Current progress: 13 percent done.
FLT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.844883e-02	ci left: 4.997504e-01	ci right 5.194440e-01	k: 5096	n:10000
Cons ci ratio: 6.271914e-02	ci left: 2.720070e-01	ci right 2.897208e-01	k: 2808	n:10000
KS ci ratio: 3.843345e-02	ci left: 4.999504e-01	ci right 5.196439e-01	k: 5098	n:10000
FLT1   10000 perm   2 sec   (4426 perm/sec)   p_kst 5.098000e-01   p_cons 2.808000e-01   p_joint 5.096000e-01

Outputting figure to mutsig2_images.part000000000065/FLT1.11_4400_10000_0.5098_0.2808_0.5096.png
                gene_name: FLT1
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 15 percent done.
FLRT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.750623e-02	ci left: 5.121545e-01	ci right 5.318327e-01	k: 5220	n:10000
Cons ci ratio: 1.270466e-02	ci left: 8.990845e-01	ci right 9.106784e-01	k: 9050	n:10000
KS ci ratio: 5.556630e-02	ci left: 3.229685e-01	ci right 3.415293e-01	k: 3322	n:10000
FLRT2   10000 perm   2 sec   (5759 perm/sec)   p_kst 3.322000e-01   p_cons 9.050000e-01   p_joint 5.220000e-01

Outputting figure to mutsig2_images.part000000000065/FLRT2.10_1987_10000_0.3322_0.905_0.522.png
                gene_name: FLRT2
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 18 percent done.
FIGN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.214176e-02	ci left: 4.539876e-01	ci right 4.736335e-01	k: 4638	n:10000
Cons ci ratio: 1.916501e-02	ci left: 7.992275e-01	ci right 8.147933e-01	k: 8071	n:10000
KS ci ratio: 5.886768e-02	ci left: 2.980661e-01	ci right 3.162464e-01	k: 3071	n:10000
FIGN   10000 perm   2 sec   (5373 perm/sec)   p_kst 3.071000e-01   p_cons 8.071000e-01   p_joint 4.638000e-01

Outputting figure to mutsig2_images.part000000000065/FIGN.9_2288_10000_0.3071_0.8071_0.4638.png
                gene_name: FIGN
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 21 percent done.
FILIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.556745e-01	ci left: 9.867770e-03	ci right 1.422343e-02	k: 119	n:10000
Cons ci ratio: 3.708756e-02	ci left: 5.177583e-01	ci right 5.374256e-01	k: 5276	n:10000
KS ci ratio: 4.509198e-01	ci left: 5.814929e-03	ci right 9.281233e-03	k: 74	n:10000
FILIP1   10000 perm   2 sec   (4536 perm/sec)   p_kst 7.400000e-03   p_cons 5.276000e-01   p_joint 1.190000e-02

Joint ci ratio: 2.194697e-01	ci left: 1.397554e-02	ci right 1.746732e-02	k: 313	n:20000
Cons ci ratio: 2.634794e-02	ci left: 5.183511e-01	ci right 5.322415e-01	k: 10506	n:20000
KS ci ratio: 3.076857e-01	ci left: 6.812321e-03	ci right 9.333850e-03	k: 160	n:20000
FILIP1   20000 perm   5 sec   (4144 perm/sec)   p_kst 8.000000e-03   p_cons 5.253000e-01   p_joint 1.565000e-02

Joint ci ratio: 1.906213e-01	ci left: 1.257399e-02	ci right 1.525470e-02	k: 416	n:30000
Cons ci ratio: 2.133873e-02	ci left: 5.236992e-01	ci right 5.350284e-01	k: 15881	n:30000
KS ci ratio: 2.627104e-01	ci left: 6.399145e-03	ci right 8.364734e-03	k: 220	n:30000
FILIP1   30000 perm   8 sec   (3963 perm/sec)   p_kst 7.333333e-03   p_cons 5.293667e-01   p_joint 1.386667e-02

Joint ci ratio: 1.471795e-01	ci left: 1.614124e-02	ci right 1.872950e-02	k: 696	n:40000
Cons ci ratio: 1.841683e-02	ci left: 5.261700e-01	ci right 5.359755e-01	k: 21243	n:40000
KS ci ratio: 2.347101e-01	ci left: 6.112239e-03	ci right 7.760564e-03	k: 276	n:40000
FILIP1   40000 perm   10 sec   (3842 perm/sec)   p_kst 6.900000e-03   p_cons 5.310750e-01   p_joint 1.740000e-02

Joint ci ratio: 1.224645e-01	ci left: 1.884899e-02	ci right 2.132717e-02	k: 1003	n:50000
Cons ci ratio: 1.649364e-02	ci left: 5.260539e-01	ci right 5.348226e-01	k: 26522	n:50000
KS ci ratio: 2.128131e-01	ci left: 6.022641e-03	ci right 7.475515e-03	k: 336	n:50000
FILIP1   50000 perm   13 sec   (3757 perm/sec)   p_kst 6.720000e-03   p_cons 5.304400e-01   p_joint 2.006000e-02

Joint ci ratio: 1.263726e-01	ci left: 1.478505e-02	ci right 1.679552e-02	k: 946	n:60000
Cons ci ratio: 1.503217e-02	ci left: 5.272473e-01	ci right 5.352497e-01	k: 31875	n:60000
KS ci ratio: 1.958375e-01	ci left: 5.983579e-03	ci right 7.298158e-03	k: 397	n:60000
FILIP1   60000 perm   16 sec   (3682 perm/sec)   p_kst 6.616667e-03   p_cons 5.312500e-01   p_joint 1.576667e-02

Joint ci ratio: 1.207648e-01	ci left: 1.393235e-02	ci right 1.573677e-02	k: 1037	n:70000
Cons ci ratio: 1.390815e-02	ci left: 5.278664e-01	ci right 5.352738e-01	k: 37210	n:70000
KS ci ratio: 1.786821e-01	ci left: 6.218226e-03	ci right 7.451758e-03	k: 477	n:70000
FILIP1   70000 perm   19 sec   (3614 perm/sec)   p_kst 6.814286e-03   p_cons 5.315714e-01   p_joint 1.481429e-02

Joint ci ratio: 1.062656e-01	ci left: 1.583550e-02	ci right 1.762479e-02	k: 1337	n:80000
Cons ci ratio: 1.299383e-02	ci left: 5.287226e-01	ci right 5.356501e-01	k: 42575	n:80000
KS ci ratio: 1.653661e-01	ci left: 6.397993e-03	ci right 7.563191e-03	k: 557	n:80000
FILIP1   80000 perm   23 sec   (3554 perm/sec)   p_kst 6.962500e-03   p_cons 5.321875e-01   p_joint 1.671250e-02

Joint ci ratio: 1.048646e-01	ci left: 1.448654e-02	ci right 1.610048e-02	k: 1375	n:90000
Cons ci ratio: 1.227093e-02	ci left: 5.281000e-01	ci right 5.346313e-01	k: 47823	n:90000
KS ci ratio: 1.587012e-01	ci left: 6.198765e-03	ci right 7.277841e-03	k: 605	n:90000
FILIP1   90000 perm   26 sec   (3497 perm/sec)   p_kst 6.722222e-03   p_cons 5.313667e-01   p_joint 1.527778e-02

Joint ci ratio: 8.710639e-02	ci left: 1.898464e-02	ci right 2.072337e-02	k: 1984	n:100000
Cons ci ratio: 1.165099e-02	ci left: 5.278511e-01	ci right 5.340471e-01	k: 53095	n:100000
KS ci ratio: 1.501463e-01	ci left: 6.261483e-03	ci right 7.287440e-03	k: 676	n:100000
FILIP1   100000 perm   29 sec   (3444 perm/sec)   p_kst 6.760000e-03   p_cons 5.309500e-01   p_joint 1.984000e-02

Joint ci ratio: 8.486488e-02	ci left: 1.821916e-02	ci right 1.984270e-02	k: 2092	n:110000
Cons ci ratio: 1.111843e-02	ci left: 5.275636e-01	ci right 5.334711e-01	k: 58357	n:110000
KS ci ratio: 1.431299e-01	ci left: 6.287772e-03	ci right 7.265778e-03	k: 744	n:110000
FILIP1   110000 perm   32 sec   (3394 perm/sec)   p_kst 6.763636e-03   p_cons 5.305182e-01   p_joint 1.901818e-02

Joint ci ratio: 8.904928e-02	ci left: 1.518351e-02	ci right 1.660670e-02	k: 1906	n:120000
Cons ci ratio: 1.064869e-02	ci left: 5.275214e-01	ci right 5.331772e-01	k: 63642	n:120000
KS ci ratio: 1.360894e-01	ci left: 6.399163e-03	ci right 7.341572e-03	k: 823	n:120000
FILIP1   120000 perm   36 sec   (3348 perm/sec)   p_kst 6.858333e-03   p_cons 5.303500e-01   p_joint 1.588333e-02

Joint ci ratio: 8.488847e-02	ci left: 1.545292e-02	ci right 1.683033e-02	k: 2097	n:130000
Cons ci ratio: 1.022707e-02	ci left: 5.278211e-01	ci right 5.332545e-01	k: 68970	n:130000
KS ci ratio: 1.307997e-01	ci left: 6.412541e-03	ci right 7.317359e-03	k: 891	n:130000
FILIP1   130000 perm   39 sec   (3306 perm/sec)   p_kst 6.853846e-03   p_cons 5.305385e-01   p_joint 1.613077e-02

Joint ci ratio: 7.587805e-02	ci left: 1.799682e-02	ci right 1.942321e-02	k: 2618	n:140000
Cons ci ratio: 9.845229e-03	ci left: 5.284175e-01	ci right 5.336527e-01	k: 74345	n:140000
KS ci ratio: 1.260164e-01	ci left: 6.431533e-03	ci right 7.303365e-03	k: 960	n:140000
FILIP1   140000 perm   43 sec   (3262 perm/sec)   p_kst 6.857143e-03   p_cons 5.310357e-01   p_joint 1.870000e-02

Joint ci ratio: 7.518462e-02	ci left: 1.713032e-02	ci right 1.847508e-02	k: 2669	n:150000
Cons ci ratio: 9.507882e-03	ci left: 5.286907e-01	ci right 5.337481e-01	k: 79683	n:150000
KS ci ratio: 1.220807e-01	ci left: 6.409728e-03	ci right 7.249505e-03	k: 1023	n:150000
FILIP1   150000 perm   47 sec   (3223 perm/sec)   p_kst 6.820000e-03   p_cons 5.312200e-01   p_joint 1.779333e-02

Joint ci ratio: 7.288846e-02	ci left: 1.710863e-02	ci right 1.840893e-02	k: 2840	n:160000
Cons ci ratio: 9.206227e-03	ci left: 5.287574e-01	ci right 5.336540e-01	k: 84993	n:160000
KS ci ratio: 1.188782e-01	ci left: 6.348560e-03	ci right 7.156969e-03	k: 1079	n:160000
FILIP1   160000 perm   50 sec   (3183 perm/sec)   p_kst 6.743750e-03   p_cons 5.312062e-01   p_joint 1.775000e-02

Joint ci ratio: 7.273219e-02	ci left: 1.618859e-02	ci right 1.741620e-02	k: 2855	n:170000
Cons ci ratio: 8.931574e-03	ci left: 5.288185e-01	ci right 5.335687e-01	k: 90303	n:170000
KS ci ratio: 1.156081e-01	ci left: 6.329123e-03	ci right 7.111372e-03	k: 1141	n:170000
FILIP1   170000 perm   54 sec   (3143 perm/sec)   p_kst 6.711765e-03   p_cons 5.311941e-01   p_joint 1.679412e-02

Joint ci ratio: 7.336942e-02	ci left: 1.503801e-02	ci right 1.618878e-02	k: 2809	n:180000
Cons ci ratio: 8.677314e-03	ci left: 5.290359e-01	ci right 5.336520e-01	k: 95642	n:180000
KS ci ratio: 1.125467e-01	ci left: 6.317516e-03	ci right 7.076281e-03	k: 1204	n:180000
FILIP1   180000 perm   58 sec   (3105 perm/sec)   p_kst 6.688889e-03   p_cons 5.313444e-01   p_joint 1.560556e-02

Joint ci ratio: 7.412633e-02	ci left: 1.396728e-02	ci right 1.504761e-02	k: 2755	n:190000
Cons ci ratio: 8.443243e-03	ci left: 5.292531e-01	ci right 5.337459e-01	k: 100985	n:190000
KS ci ratio: 1.099347e-01	ci left: 6.281778e-03	ci right 7.017606e-03	k: 1262	n:190000
FILIP1   190000 perm   62 sec   (3067 perm/sec)   p_kst 6.642105e-03   p_cons 5.315000e-01   p_joint 1.450000e-02

Joint ci ratio: 7.294205e-02	ci left: 1.371548e-02	ci right 1.475867e-02	k: 2846	n:200000
Cons ci ratio: 8.227063e-03	ci left: 5.294551e-01	ci right 5.338339e-01	k: 106329	n:200000
KS ci ratio: 1.068874e-01	ci left: 6.322800e-03	ci right 7.041611e-03	k: 1335	n:200000
FILIP1   200000 perm   66 sec   (3030 perm/sec)   p_kst 6.675000e-03   p_cons 5.316450e-01   p_joint 1.423000e-02

Joint ci ratio: 6.934065e-02	ci left: 1.447040e-02	ci right 1.551448e-02	k: 3147	n:210000
Cons ci ratio: 8.023839e-03	ci left: 5.298154e-01	ci right 5.340884e-01	k: 111710	n:210000
KS ci ratio: 1.010554e-01	ci left: 6.754616e-03	ci right 7.478137e-03	k: 1493	n:210000
FILIP1   210000 perm   70 sec   (2995 perm/sec)   p_kst 7.109524e-03   p_cons 5.319524e-01   p_joint 1.498571e-02

Joint ci ratio: 6.394400e-02	ci left: 1.625811e-02	ci right 1.733650e-02	k: 3694	n:220000
Cons ci ratio: 7.840615e-03	ci left: 5.297850e-01	ci right 5.339596e-01	k: 117012	n:220000
KS ci ratio: 9.867301e-02	ci left: 6.771122e-03	ci right 7.478321e-03	k: 1566	n:220000
FILIP1   220000 perm   74 sec   (2961 perm/sec)   p_kst 7.118182e-03   p_cons 5.318727e-01   p_joint 1.679091e-02

Outputting figure to mutsig2_images.part000000000065/FILIP1.7_3662_220000_0.0071182_0.53187_0.016791.png
                gene_name: FILIP1
               theta_stop: 0.099 
                    nperm: 220000 
                     p_ks: 0.0071 
        ci_ks_bounds_left: 0.0068 
       ci_ks_bounds_right: 0.0075 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.017 
     ci_joint_bounds_left: 0.016 
    ci_joint_bounds_right: 0.017 

Current progress: 23 percent done.
FLT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.324517e-02	ci left: 3.420374e-01	ci right 3.608492e-01	k: 3514	n:10000
Cons ci ratio: 8.828742e-03	ci left: 9.474185e-01	ci right 9.559159e-01	k: 9518	n:10000
KS ci ratio: 7.762261e-02	ci left: 1.952523e-01	ci right 2.111210e-01	k: 2031	n:10000
FLT3   10000 perm   2 sec   (5166 perm/sec)   p_kst 2.031000e-01   p_cons 9.518000e-01   p_joint 3.514000e-01

Outputting figure to mutsig2_images.part000000000065/FLT3.7_3078_10000_0.2031_0.9518_0.3514.png
                gene_name: FLT3
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 26 percent done.
FHDC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.627528e-02	ci left: 1.353117e-01	ci right 1.490975e-01	k: 1421	n:10000
Cons ci ratio: 2.108706e-01	ci left: 2.986994e-02	ci right 3.700523e-02	k: 333	n:10000
KS ci ratio: 2.339214e-02	ci left: 7.286569e-01	ci right 7.460046e-01	k: 7374	n:10000
FHDC1   10000 perm   2 sec   (4942 perm/sec)   p_kst 7.374000e-01   p_cons 3.330000e-02   p_joint 1.421000e-01

Joint ci ratio: 6.474296e-02	ci left: 1.498618e-01	ci right 1.599388e-01	k: 3097	n:20000
Cons ci ratio: 1.387992e-01	ci left: 3.568248e-02	ci right 4.105279e-02	k: 766	n:20000
KS ci ratio: 1.668619e-02	ci left: 7.278175e-01	ci right 7.401145e-01	k: 14680	n:20000
FHDC1   20000 perm   4 sec   (4485 perm/sec)   p_kst 7.340000e-01   p_cons 3.830000e-02   p_joint 1.548500e-01

Joint ci ratio: 4.856292e-02	ci left: 1.740824e-01	ci right 1.827800e-01	k: 5352	n:30000
Cons ci ratio: 1.131001e-01	ci left: 3.631853e-02	ci right 4.070476e-02	k: 1154	n:30000
KS ci ratio: 1.364290e-02	ci left: 7.284243e-01	ci right 7.384638e-01	k: 22004	n:30000
FHDC1   30000 perm   7 sec   (4302 perm/sec)   p_kst 7.334667e-01   p_cons 3.846667e-02   p_joint 1.784000e-01

Joint ci ratio: 4.571944e-02	ci left: 1.516889e-01	ci right 1.588112e-01	k: 6209	n:40000
Cons ci ratio: 9.775007e-02	ci left: 3.675764e-02	ci right 4.055971e-02	k: 1545	n:40000
KS ci ratio: 1.179977e-02	ci left: 7.296153e-01	ci right 7.383007e-01	k: 29359	n:40000
FHDC1   40000 perm   10 sec   (4181 perm/sec)   p_kst 7.339750e-01   p_cons 3.862500e-02   p_joint 1.552250e-01

Outputting figure to mutsig2_images.part000000000065/FHDC1.6_3476_40000_0.73398_0.038625_0.15523.png
                gene_name: FHDC1
               theta_stop: 0.098 
                    nperm: 40000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.039 
      ci_cons_bounds_left: 0.037 
     ci_cons_bounds_right: 0.041 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 28 percent done.
FHOD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.574050e-02	ci left: 5.361795e-01	ci right 5.557937e-01	k: 5460	n:10000
Cons ci ratio: 5.080236e-02	ci left: 3.636092e-01	ci right 3.826648e-01	k: 3731	n:10000
KS ci ratio: 3.928828e-02	ci left: 4.889518e-01	ci right 5.086489e-01	k: 4988	n:10000
FHOD3   10000 perm   2 sec   (4980 perm/sec)   p_kst 4.988000e-01   p_cons 3.731000e-01   p_joint 5.460000e-01

Outputting figure to mutsig2_images.part000000000065/FHOD3.5_4420_10000_0.4988_0.3731_0.546.png
                gene_name: FHOD3
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 31 percent done.
FLI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.321706e-02	ci left: 7.315870e-01	ci right 7.488729e-01	k: 7403	n:10000
Cons ci ratio: 6.396856e-02	ci left: 2.641865e-01	ci right 2.817460e-01	k: 2729	n:10000
KS ci ratio: 6.377672e-03	ci left: 9.710070e-01	ci right 9.773127e-01	k: 9743	n:10000
FLI1   10000 perm   2 sec   (5275 perm/sec)   p_kst 9.743000e-01   p_cons 2.729000e-01   p_joint 7.403000e-01

Outputting figure to mutsig2_images.part000000000065/FLI1.5_1395_10000_0.9743_0.2729_0.7403.png
                gene_name: FLI1
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 33 percent done.
FLT4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.201623e-02	ci left: 1.464866e-01	ci right 1.607158e-01	k: 1535	n:10000
Cons ci ratio: 1.915330e-01	ci left: 3.633915e-02	ci right 4.413159e-02	k: 401	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
FLT4   10000 perm   2 sec   (4815 perm/sec)   p_kst 1   p_cons 4.010000e-02   p_joint 1.535000e-01

Joint ci ratio: 5.452635e-02	ci left: 1.997202e-01	ci right 2.109656e-01	k: 4106	n:20000
Cons ci ratio: 1.399415e-01	ci left: 3.510267e-02	ci right 4.043280e-02	k: 754	n:20000
KS ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
FLT4   20000 perm   5 sec   (4364 perm/sec)   p_kst 1   p_cons 3.770000e-02   p_joint 2.053000e-01

Joint ci ratio: 5.373426e-02	ci left: 1.466031e-01	ci right 1.547314e-01	k: 4519	n:30000
Cons ci ratio: 1.085382e-01	ci left: 3.940081e-02	ci right 4.395516e-02	k: 1249	n:30000
KS ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
FLT4   30000 perm   7 sec   (4186 perm/sec)   p_kst 1   p_cons 4.163333e-02   p_joint 1.506333e-01

Joint ci ratio: 3.741825e-02	ci left: 2.112554e-01	ci right 2.193359e-01	k: 8611	n:40000
Cons ci ratio: 9.768437e-02	ci left: 3.680646e-02	ci right 4.061088e-02	k: 1547	n:40000
KS ci ratio: 9.799510e-05	ci left: 9.999078e-01	ci right 1	k: 40000	n:40000
FLT4   40000 perm   10 sec   (4076 perm/sec)   p_kst 1   p_cons 3.867500e-02   p_joint 2.152750e-01

Outputting figure to mutsig2_images.part000000000065/FLT4.5_4220_40000_1_0.038675_0.21527.png
                gene_name: FLT4
               theta_stop: 0.098 
                    nperm: 40000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.039 
      ci_cons_bounds_left: 0.037 
     ci_cons_bounds_right: 0.041 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 36 percent done.
FGFR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.140007e-02	ci left: 7.620288e-01	ci right 7.786135e-01	k: 7704	n:10000
Cons ci ratio: 5.706448e-02	ci left: 3.113568e-01	ci right 3.297478e-01	k: 3205	n:10000
KS ci ratio: 3.107787e-02	ci left: 6.043762e-01	ci right 6.235573e-01	k: 6140	n:10000
FGFR2   10000 perm   2 sec   (5642 perm/sec)   p_kst 6.140000e-01   p_cons 3.205000e-01   p_joint 7.704000e-01

Outputting figure to mutsig2_images.part000000000065/FGFR2.4_2790_10000_0.614_0.3205_0.7704.png
                gene_name: FGFR2
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 38 percent done.
FGFR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.611774e-02	ci left: 1.357035e-01	ci right 1.495054e-01	k: 1425	n:10000
Cons ci ratio: 4.532749e-02	ci left: 4.180751e-01	ci right 4.375670e-01	k: 4278	n:10000
KS ci ratio: 1.331091e-01	ci left: 7.446484e-02	ci right 8.518145e-02	k: 797	n:10000
FGFR3   10000 perm   2 sec   (5373 perm/sec)   p_kst 7.970000e-02   p_cons 4.278000e-01   p_joint 1.425000e-01

Joint ci ratio: 8.697452e-02	ci left: 8.817594e-02	ci right 9.624307e-02	k: 1843	n:20000
Cons ci ratio: 3.198234e-02	ci left: 4.220267e-01	ci right 4.357940e-01	k: 8578	n:20000
KS ci ratio: 9.552987e-02	ci left: 7.392873e-02	ci right 8.139460e-02	k: 1552	n:20000
FGFR3   20000 perm   4 sec   (4825 perm/sec)   p_kst 7.760000e-02   p_cons 4.289000e-01   p_joint 9.215000e-02

Outputting figure to mutsig2_images.part000000000065/FGFR3.4_2644_20000_0.0776_0.4289_0.09215.png
                gene_name: FGFR3
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.078 
        ci_ks_bounds_left: 0.074 
       ci_ks_bounds_right: 0.081 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.092 
     ci_joint_bounds_left: 0.088 
    ci_joint_bounds_right: 0.096 

Current progress: 41 percent done.
FGFRL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.988259e-02	ci left: 1.525700e-01	ci right 1.670288e-01	k: 1597	n:10000
Cons ci ratio: 3.920980e-02	ci left: 4.899514e-01	ci right 5.096487e-01	k: 4998	n:10000
KS ci ratio: 1.576830e-01	ci left: 5.359424e-02	ci right 6.286520e-02	k: 581	n:10000
FGFRL1   10000 perm   2 sec   (5813 perm/sec)   p_kst 5.810000e-02   p_cons 4.998000e-01   p_joint 1.597000e-01

Joint ci ratio: 7.702532e-02	ci left: 1.102166e-01	ci right 1.190958e-01	k: 2292	n:20000
Cons ci ratio: 2.819171e-02	ci left: 4.845481e-01	ci right 4.984543e-01	k: 9830	n:20000
KS ci ratio: 1.111467e-01	ci left: 5.528683e-02	ci right 6.184224e-02	k: 1170	n:20000
FGFRL1   20000 perm   4 sec   (5211 perm/sec)   p_kst 5.850000e-02   p_cons 4.915000e-01   p_joint 1.146000e-01

Joint ci ratio: 6.860925e-02	ci left: 9.475646e-02	ci right 1.015216e-01	k: 2943	n:30000
Cons ci ratio: 2.247015e-02	ci left: 4.978921e-01	ci right 5.092405e-01	k: 15107	n:30000
KS ci ratio: 9.054644e-02	ci left: 5.613148e-02	ci right 6.148769e-02	k: 1763	n:30000
FGFRL1   30000 perm   6 sec   (4957 perm/sec)   p_kst 5.876667e-02   p_cons 5.035667e-01   p_joint 9.810000e-02

Outputting figure to mutsig2_images.part000000000065/FGFRL1.4_1539_30000_0.058767_0.50357_0.0981.png
                gene_name: FGFRL1
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.059 
        ci_ks_bounds_left: 0.056 
       ci_ks_bounds_right: 0.061 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.098 
     ci_joint_bounds_left: 0.095 
    ci_joint_bounds_right: 0.10 

Current progress: 44 percent done.
FIG4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.382235e-02	ci left: 3.371692e-01	ci right 3.559202e-01	k: 3465	n:10000
Cons ci ratio: 8.780620e-03	ci left: 9.479391e-01	ci right 9.563950e-01	k: 9523	n:10000
KS ci ratio: 9.986532e-02	ci left: 1.267935e-01	ci right 1.402208e-01	k: 1334	n:10000
FIG4   10000 perm   2 sec   (5580 perm/sec)   p_kst 1.334000e-01   p_cons 9.523000e-01   p_joint 3.465000e-01

Outputting figure to mutsig2_images.part000000000065/FIG4.4_2816_10000_0.1334_0.9523_0.3465.png
                gene_name: FIG4
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 46 percent done.
FILIP1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.728785e-02	ci left: 8.298162e-01	ci right 8.443869e-01	k: 8372	n:10000
KS ci ratio: 1.427922e-02	ci left: 8.764362e-01	ci right 8.891399e-01	k: 8829	n:10000
FILIP1L   10000 perm   2 sec   (5348 perm/sec)   p_kst 8.829000e-01   p_cons 8.372000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000065/FILIP1L.4_3449_10000_0.8829_0.8372_1.png
                gene_name: FILIP1L
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 49 percent done.
FLII
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.853727e-01	ci left: 3.882106e-02	ci right 4.684801e-02	k: 427	n:10000
Cons ci ratio: 4.193901e-02	ci left: 4.563836e-01	ci right 4.760361e-01	k: 4662	n:10000
KS ci ratio: 3.338274e-01	ci left: 1.133070e-02	ci right 1.595903e-02	k: 135	n:10000
FLII   10000 perm   2 sec   (5212 perm/sec)   p_kst 1.350000e-02   p_cons 4.662000e-01   p_joint 4.270000e-02

Joint ci ratio: 1.226379e-01	ci left: 4.561215e-02	ci right 5.161995e-02	k: 971	n:20000
Cons ci ratio: 2.983115e-02	ci left: 4.563699e-01	ci right 4.702407e-01	k: 9266	n:20000
KS ci ratio: 2.369421e-01	ci left: 1.189959e-02	ci right 1.514412e-02	k: 269	n:20000
FLII   20000 perm   4 sec   (4672 perm/sec)   p_kst 1.345000e-02   p_cons 4.633000e-01   p_joint 4.855000e-02

Joint ci ratio: 1.158942e-01	ci left: 3.460064e-02	ci right 3.888967e-02	k: 1101	n:30000
Cons ci ratio: 2.428924e-02	ci left: 4.590432e-01	ci right 4.703637e-01	k: 13941	n:30000
KS ci ratio: 1.927416e-01	ci left: 1.228821e-02	ci right 1.494055e-02	k: 407	n:30000
FLII   30000 perm   7 sec   (4474 perm/sec)   p_kst 1.356667e-02   p_cons 4.647000e-01   p_joint 3.670000e-02

Joint ci ratio: 1.225892e-01	ci left: 2.339505e-02	ci right 2.647444e-02	k: 996	n:40000
Cons ci ratio: 2.056368e-02	ci left: 4.710951e-01	ci right 4.809084e-01	k: 19040	n:40000
KS ci ratio: 1.667645e-01	ci left: 1.248787e-02	ci right 1.478354e-02	k: 544	n:40000
FLII   40000 perm   9 sec   (4331 perm/sec)   p_kst 1.360000e-02   p_cons 4.760000e-01   p_joint 2.490000e-02

Joint ci ratio: 1.035167e-01	ci left: 2.643495e-02	ci right 2.934021e-02	k: 1393	n:50000
Cons ci ratio: 1.841279e-02	ci left: 4.710742e-01	ci right 4.798486e-01	k: 23773	n:50000
KS ci ratio: 1.496330e-01	ci left: 1.252605e-02	ci right 1.457100e-02	k: 676	n:50000
FLII   50000 perm   12 sec   (4227 perm/sec)   p_kst 1.352000e-02   p_cons 4.754600e-01   p_joint 2.786000e-02

Joint ci ratio: 1.054011e-01	ci left: 2.134439e-02	ci right 2.373543e-02	k: 1351	n:60000
Cons ci ratio: 1.679096e-02	ci left: 4.719801e-01	ci right 4.799889e-01	k: 28559	n:60000
KS ci ratio: 1.355343e-01	ci left: 1.281735e-02	ci right 1.469679e-02	k: 824	n:60000
FLII   60000 perm   15 sec   (4136 perm/sec)   p_kst 1.373333e-02   p_cons 4.759833e-01   p_joint 2.251667e-02

Joint ci ratio: 1.023776e-01	ci left: 1.946304e-02	ci right 2.157697e-02	k: 1435	n:70000
Cons ci ratio: 1.552849e-02	ci left: 4.728226e-01	ci right 4.802365e-01	k: 33357	n:70000
KS ci ratio: 1.258456e-01	ci left: 1.281041e-02	ci right 1.454453e-02	k: 956	n:70000
FLII   70000 perm   17 sec   (4045 perm/sec)   p_kst 1.365714e-02   p_cons 4.765286e-01   p_joint 2.050000e-02

Joint ci ratio: 8.486835e-02	ci left: 2.487151e-02	ci right 2.708805e-02	k: 2077	n:80000
Cons ci ratio: 1.449881e-02	ci left: 4.739834e-01	ci right 4.809182e-01	k: 38196	n:80000
KS ci ratio: 1.180308e-01	ci left: 1.279669e-02	ci right 1.441387e-02	k: 1087	n:80000
FLII   80000 perm   20 sec   (3976 perm/sec)   p_kst 1.358750e-02   p_cons 4.774500e-01   p_joint 2.596250e-02

Joint ci ratio: 8.123135e-02	ci left: 2.419670e-02	ci right 2.625628e-02	k: 2269	n:90000
Cons ci ratio: 1.367284e-02	ci left: 4.740653e-01	ci right 4.806028e-01	k: 42960	n:90000
KS ci ratio: 1.115581e-01	ci left: 1.277782e-02	ci right 1.429822e-02	k: 1217	n:90000
FLII   90000 perm   23 sec   (3907 perm/sec)   p_kst 1.352222e-02   p_cons 4.773333e-01   p_joint 2.521111e-02

Joint ci ratio: 7.712912e-02	ci left: 2.420794e-02	ci right 2.615974e-02	k: 2517	n:100000
Cons ci ratio: 1.297910e-02	ci left: 4.739300e-01	ci right 4.801313e-01	k: 47703	n:100000
KS ci ratio: 1.053739e-01	ci left: 1.293023e-02	ci right 1.437819e-02	k: 1364	n:100000
FLII   100000 perm   26 sec   (3846 perm/sec)   p_kst 1.364000e-02   p_cons 4.770300e-01   p_joint 2.517000e-02

Joint ci ratio: 7.247054e-02	ci left: 2.496932e-02	ci right 2.685579e-02	k: 2849	n:110000
Cons ci ratio: 1.267866e-02	ci left: 4.620035e-01	ci right 4.679075e-01	k: 51145	n:110000
KS ci ratio: 1.005550e-01	ci left: 1.294157e-02	ci right 1.432061e-02	k: 1498	n:110000
FLII   110000 perm   29 sec   (3783 perm/sec)   p_kst 1.361818e-02   p_cons 4.649545e-01   p_joint 2.590000e-02

Joint ci ratio: 6.727240e-02	ci left: 2.659019e-02	ci right 2.844940e-02	k: 3301	n:120000
Cons ci ratio: 1.211384e-02	ci left: 4.631576e-01	ci right 4.688107e-01	k: 55918	n:120000
KS ci ratio: 9.658218e-02	ci left: 1.288721e-02	ci right 1.420312e-02	k: 1624	n:120000
FLII   120000 perm   32 sec   (3723 perm/sec)   p_kst 1.353333e-02   p_cons 4.659833e-01   p_joint 2.750833e-02

Outputting figure to mutsig2_images.part000000000065/FLII.4_3930_120000_0.013533_0.46598_0.027508.png
                gene_name: FLII
               theta_stop: 0.097 
                    nperm: 120000 
                     p_ks: 0.014 
        ci_ks_bounds_left: 0.013 
       ci_ks_bounds_right: 0.014 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.028 
     ci_joint_bounds_left: 0.027 
    ci_joint_bounds_right: 0.028 

Current progress: 51 percent done.
FHL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.784120e-02	ci left: 3.919717e-01	ci right 4.112857e-01	k: 4016	n:10000
Cons ci ratio: 6.401693e-02	ci left: 2.638896e-01	ci right 2.814430e-01	k: 2726	n:10000
KS ci ratio: 5.002953e-02	ci left: 3.707712e-01	ci right 3.898986e-01	k: 3803	n:10000
FHL5   10000 perm   2 sec   (6247 perm/sec)   p_kst 3.803000e-01   p_cons 2.726000e-01   p_joint 4.016000e-01

Outputting figure to mutsig2_images.part000000000065/FHL5.3_875_10000_0.3803_0.2726_0.4016.png
                gene_name: FHL5
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 54 percent done.
FKBP15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.536816e-02	ci left: 6.957512e-01	ci right 7.137293e-01	k: 7048	n:10000
Cons ci ratio: 3.251226e-02	ci left: 5.826932e-01	ci right 6.020529e-01	k: 5924	n:10000
KS ci ratio: 2.216715e-02	ci left: 7.491777e-01	ci right 7.660720e-01	k: 7577	n:10000
FKBP15   10000 perm   2 sec   (5174 perm/sec)   p_kst 7.577000e-01   p_cons 5.924000e-01   p_joint 7.048000e-01

Outputting figure to mutsig2_images.part000000000065/FKBP15.3_3772_10000_0.7577_0.5924_0.7048.png
                gene_name: FKBP15
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.71 

Current progress: 56 percent done.
FLJ10357
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.858578e-02	ci left: 6.433756e-01	ci right 6.621354e-01	k: 6528	n:10000
Cons ci ratio: 1.639181e-02	ci left: 8.440725e-01	ci right 8.581223e-01	k: 8512	n:10000
KS ci ratio: 4.347894e-02	ci left: 4.385190e-01	ci right 4.581112e-01	k: 4483	n:10000
FLJ10357   10000 perm   2 sec   (4959 perm/sec)   p_kst 4.483000e-01   p_cons 8.512000e-01   p_joint 6.528000e-01

Outputting figure to mutsig2_images.part000000000065/FLJ10357.3_4652_10000_0.4483_0.8512_0.6528.png
                gene_name: FLJ10357
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 59 percent done.
FLNB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.164260e-02	ci left: 9.134796e-01	ci right 9.242749e-01	k: 9190	n:10000
Cons ci ratio: 1.675240e-02	ci left: 8.383675e-01	ci right 8.526306e-01	k: 8456	n:10000
KS ci ratio: 3.493343e-02	ci left: 5.474992e-01	ci right 5.670674e-01	k: 5573	n:10000
FLNB   10000 perm   2 sec   (4147 perm/sec)   p_kst 5.573000e-01   p_cons 8.456000e-01   p_joint 9.190000e-01

Outputting figure to mutsig2_images.part000000000065/FLNB.3_8090_10000_0.5573_0.8456_0.919.png
                gene_name: FLNB
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 62 percent done.
FGF5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.001478e-02	ci left: 9.339228e-01	ci right 9.434196e-01	k: 9388	n:10000
KS ci ratio: 2.066107e-02	ci left: 7.743839e-01	ci right 7.906512e-01	k: 7826	n:10000
FGF5   10000 perm   1 sec   (6749 perm/sec)   p_kst 7.826000e-01   p_cons 9.388000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000065/FGF5.2_819_10000_0.7826_0.9388_1.png
                gene_name: FGF5
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 64 percent done.
FGF6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.731015e-02	ci left: 6.639075e-01	ci right 6.823916e-01	k: 6732	n:10000
Cons ci ratio: 2.292739e-02	ci left: 7.364378e-01	ci right 7.536193e-01	k: 7451	n:10000
KS ci ratio: 4.448599e-02	ci left: 4.272478e-01	ci right 4.467889e-01	k: 4370	n:10000
FGF6   10000 perm   1 sec   (6859 perm/sec)   p_kst 4.370000e-01   p_cons 7.451000e-01   p_joint 6.732000e-01

Outputting figure to mutsig2_images.part000000000065/FGF6.2_639_10000_0.437_0.7451_0.6732.png
                gene_name: FGF6
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 67 percent done.
FGFR4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.510632e-02	ci left: 7.000883e-01	ci right 7.179898e-01	k: 7091	n:10000
Cons ci ratio: 2.714277e-02	ci left: 6.666264e-01	ci right 6.850711e-01	k: 6759	n:10000
KS ci ratio: 3.240467e-02	ci left: 5.842987e-01	ci right 6.036465e-01	k: 5940	n:10000
FGFR4   10000 perm   2 sec   (5849 perm/sec)   p_kst 5.940000e-01   p_cons 6.759000e-01   p_joint 7.091000e-01

Outputting figure to mutsig2_images.part000000000065/FGFR4.2_2547_10000_0.594_0.6759_0.7091.png
                gene_name: FGFR4
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 69 percent done.
FGG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.385259e-02	ci left: 2.116174e-01	ci right 2.279461e-01	k: 2197	n:10000
Cons ci ratio: 3.736371e-02	ci left: 5.140556e-01	ci right 5.337305e-01	k: 5239	n:10000
KS ci ratio: 1.433170e-01	ci left: 6.459169e-02	ci right 7.466078e-02	k: 695	n:10000
FGG   10000 perm   2 sec   (6416 perm/sec)   p_kst 6.950000e-02   p_cons 5.239000e-01   p_joint 2.197000e-01

Joint ci ratio: 4.347653e-02	ci left: 2.826741e-01	ci right 2.952873e-01	k: 5779	n:20000
Cons ci ratio: 2.610856e-02	ci left: 5.229039e-01	ci right 5.367874e-01	k: 10597	n:20000
KS ci ratio: 9.751825e-02	ci left: 7.109338e-02	ci right 7.843082e-02	k: 1494	n:20000
FGG   20000 perm   4 sec   (5675 perm/sec)   p_kst 7.470000e-02   p_cons 5.298500e-01   p_joint 2.889500e-01

Outputting figure to mutsig2_images.part000000000065/FGG.2_1417_20000_0.0747_0.52985_0.28895.png
                gene_name: FGG
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.075 
        ci_ks_bounds_left: 0.071 
       ci_ks_bounds_right: 0.078 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 72 percent done.
FGGY
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.784894e-02	ci left: 8.207633e-01	ci right 8.356450e-01	k: 8283	n:10000
KS ci ratio: 1.816794e-02	ci left: 8.155790e-01	ci right 8.306323e-01	k: 8232	n:10000
FGGY   10000 perm   2 sec   (6195 perm/sec)   p_kst 8.232000e-01   p_cons 8.283000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000065/FGGY.2_1792_10000_0.8232_0.8283_1.png
                gene_name: FGGY
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 74 percent done.
FH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.086581e-02	ci left: 1.497240e-01	ci right 1.640764e-01	k: 1568	n:10000
Cons ci ratio: 9.615707e-02	ci left: 1.356056e-01	ci right 1.494034e-01	k: 1424	n:10000
KS ci ratio: 7.082374e-02	ci left: 2.261254e-01	ci right 2.428295e-01	k: 2344	n:10000
FH   10000 perm   2 sec   (6300 perm/sec)   p_kst 2.344000e-01   p_cons 1.424000e-01   p_joint 1.568000e-01

Outputting figure to mutsig2_images.part000000000065/FH.2_1573_10000_0.2344_0.1424_0.1568.png
                gene_name: FH
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 77 percent done.
FHOD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.359399e-02	ci left: 5.667444e-01	ci right 5.862110e-01	k: 5765	n:10000
KS ci ratio: 4.391342e-03	ci left: 9.853418e-01	ci right 9.897674e-01	k: 9877	n:10000
FHOD1   10000 perm   2 sec   (5452 perm/sec)   p_kst 9.877000e-01   p_cons 5.765000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000065/FHOD1.2_3583_10000_0.9877_0.5765_1.png
                gene_name: FHOD1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
FIGF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.905673e-02	ci left: 3.800254e-01	ci right 3.992390e-01	k: 3896	n:10000
Cons ci ratio: 3.798239e-02	ci left: 5.058516e-01	ci right 5.255392e-01	k: 5157	n:10000
KS ci ratio: 7.924085e-02	ci left: 1.887513e-01	ci right 2.044258e-01	k: 1965	n:10000
FIGF   10000 perm   2 sec   (6579 perm/sec)   p_kst 1.965000e-01   p_cons 5.157000e-01   p_joint 3.896000e-01

Outputting figure to mutsig2_images.part000000000065/FIGF.2_1093_10000_0.1965_0.5157_0.3896.png
                gene_name: FIGF
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 82 percent done.
FIGNL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.561992e-02	ci left: 2.542921e-01	ci right 2.716462e-01	k: 2629	n:10000
Cons ci ratio: 2.215508e-02	ci left: 7.493800e-01	ci right 7.662695e-01	k: 7579	n:10000
KS ci ratio: 8.624746e-02	ci left: 1.637654e-01	ci right 1.786266e-01	k: 1711	n:10000
FIGNL1   10000 perm   2 sec   (5696 perm/sec)   p_kst 1.711000e-01   p_cons 7.579000e-01   p_joint 2.629000e-01

Outputting figure to mutsig2_images.part000000000065/FIGNL1.2_2029_10000_0.1711_0.7579_0.2629.png
                gene_name: FIGNL1
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 85 percent done.
FIZ1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.377760e-02	ci left: 8.838059e-01	ci right 8.961658e-01	k: 8901	n:10000
KS ci ratio: 3.143955e-02	ci left: 5.988532e-01	ci right 6.180835e-01	k: 6085	n:10000
FIZ1   10000 perm   2 sec   (6540 perm/sec)   p_kst 6.085000e-01   p_cons 8.901000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000065/FIZ1.2_1499_10000_0.6085_0.8901_1.png
                gene_name: FIZ1
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
FKBP10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.593439e-02	ci left: 4.115964e-01	ci right 4.310494e-01	k: 4213	n:10000
Cons ci ratio: 5.088933e-02	ci left: 3.628135e-01	ci right 3.818609e-01	k: 3723	n:10000
KS ci ratio: 5.312859e-02	ci left: 3.430310e-01	ci right 3.618550e-01	k: 3524	n:10000
FKBP10   10000 perm   2 sec   (6394 perm/sec)   p_kst 3.524000e-01   p_cons 3.723000e-01   p_joint 4.213000e-01

Outputting figure to mutsig2_images.part000000000065/FKBP10.2_1789_10000_0.3524_0.3723_0.4213.png
                gene_name: FKBP10
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 90 percent done.
FKBP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.927115e-02	ci left: 2.951909e-01	ci right 3.133232e-01	k: 3042	n:10000
Cons ci ratio: 9.187494e-02	ci left: 1.468790e-01	ci right 1.611232e-01	k: 1539	n:10000
KS ci ratio: 1.064023e-01	ci left: 1.131062e-01	ci right 1.259164e-01	k: 1194	n:10000
FKBP6   10000 perm   2 sec   (6603 perm/sec)   p_kst 1.194000e-01   p_cons 1.539000e-01   p_joint 3.042000e-01

Joint ci ratio: 6.902878e-02	ci left: 1.340362e-01	ci right 1.436691e-01	k: 2776	n:20000
Cons ci ratio: 6.549509e-02	ci left: 1.469022e-01	ci right 1.568992e-01	k: 3037	n:20000
KS ci ratio: 7.614660e-02	ci left: 1.125272e-01	ci right 1.214845e-01	k: 2339	n:20000
FKBP6   20000 perm   3 sec   (5795 perm/sec)   p_kst 1.169500e-01   p_cons 1.518500e-01   p_joint 1.388000e-01

Outputting figure to mutsig2_images.part000000000065/FKBP6.2_1062_20000_0.11695_0.15185_0.1388.png
                gene_name: FKBP6
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 92 percent done.
FLAD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.671727e-02	ci left: 5.227627e-01	ci right 5.424183e-01	k: 5326	n:10000
KS ci ratio: 3.096655e-02	ci left: 6.060836e-01	ci right 6.252490e-01	k: 6157	n:10000
FLAD1   10000 perm   2 sec   (6120 perm/sec)   p_kst 6.157000e-01   p_cons 5.326000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000065/FLAD1.2_1936_10000_0.6157_0.5326_1.png
                gene_name: FLAD1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
FLRT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.488391e-02	ci left: 5.482006e-01	ci right 5.677656e-01	k: 5580	n:10000
KS ci ratio: 2.513066e-02	ci left: 6.996848e-01	ci right 7.175935e-01	k: 7087	n:10000
FLRT1   10000 perm   2 sec   (6263 perm/sec)   p_kst 7.087000e-01   p_cons 5.580000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000065/FLRT1.2_2029_10000_0.7087_0.558_1.png
                gene_name: FLRT1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
FLRT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.823653e-02	ci left: 8.144611e-01	ci right 8.295509e-01	k: 8221	n:10000
KS ci ratio: 5.588080e-02	ci left: 3.204868e-01	ci right 3.390125e-01	k: 3297	n:10000
FLRT3   10000 perm   2 sec   (6093 perm/sec)   p_kst 3.297000e-01   p_cons 8.221000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000065/FLRT3.2_1954_10000_0.3297_0.8221_1.png
                gene_name: FLRT3
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000065
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 65 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1542>
Subject: Job 8004085: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1542>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000066> was used as the working directory.
Started at Sun Nov 11 15:06:02 2012
Results reported at Sun Nov 11 15:19:52 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000066.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000066.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 66  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000066.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    975.45 sec.
    Max Memory :      4805 MB
    Max Swap   :      7067 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
66
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 66
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 66: processing genes 5882 - 5971
Calculating significance of each gene.
Using projection method.
5882	FLYWCH1	4.153442e-01
5883	FLYWCH2	1
5884	FMN1	6.029672e-01
5885	FMN2	8.277798e-01
5886	FMNL1	8.726924e-01
5887	FMNL2	1
5888	FMNL3	9.214920e-01
5889	FMO1	7.342674e-01
5890	FMO2	3.256375e-01
5891	FMO3	4.056384e-01
5892	FMO4	2.324268e-01
5893	FMO5	6.617234e-01
5894	FMOD	5.586940e-01
5895	FMR1	1
5896	FMR1NB	2.605215e-01
5897	FN1	6.329281e-01
5898	FN3K	6.208608e-01
5899	FN3KRP	1
5900	FNBP1	1
5901	FNBP1L	1
5902	FNBP4	2.043535e-01
5903	FNDC1	9.937961e-01
5904	FNDC3A	1
5905	FNDC3B	1.711674e-01
5906	FNDC4	1
5907	FNDC5	1
5908	FNDC7	5.794661e-01
5909	FNDC8	1
5910	FNIP1	7.673177e-01
5911	FNIP2	1
5912	FNTA	3.178678e-02
5913	FNTB	1
5914	FOLH1	5.575584e-01
5915	FOLH1B	6.429857e-01
5916	FOLR1	1
5917	FOLR2	1
5918	FOLR3	2.222409e-01
5919	FOLR4	5.850706e-01
5920	FOS	5.714834e-01
5921	FOSB	1
5922	FOSL1	5.732099e-01
5923	FOSL2	5.193312e-01
5924	FOXA1	6.087787e-01
5925	FOXA2	1
5926	FOXA3	1
5927	FOXB1	1
5928	FOXB2	1
5929	FOXC1	1.545850e-01
5930	FOXC2	1.709927e-01
5931	FOXD2	1
5932	FOXD3	1
5933	FOXD4	1
5934	FOXD4L1	2.650604e-01
5935	FOXD4L3	1
5936	FOXD4L5	1
5937	FOXE1	1
5938	FOXE3	1.886777e-01
5939	FOXF1	3.148365e-01
5940	FOXF2	1
5941	FOXG1	3.433169e-01
5942	FOXH1	1.948118e-01
5943	FOXI1	5.630862e-01
5944	FOXJ1	1
5945	FOXJ2	8.688340e-01
5946	FOXJ3	1
5947	FOXK1	6.929537e-01
5948	FOXK2	6.499022e-01
5949	FOXL1	1
5950	FOXL2	2.375060e-01
5951	FOXM1	9.363689e-01
5952	FOXN1	1
5953	FOXN2	1
5954	FOXN3	6.655280e-01
5955	FOXN4	1
5956	FOXO1	1
5957	FOXO3	8.410423e-01
5958	FOXO4	3.422542e-01
5959	FOXP1	2.532222e-01
5960	FOXP2	1
5961	FOXP3	7.104254e-01
5962	FOXP4	8.007898e-01
5963	FOXQ1	1
5964	FOXR1	1
5965	FOXR2	1
5966	FOXRED1	8.151691e-01
5967	FOXRED2	7.068033e-01
5968	FOXS1	1
5969	FPGS	6.803950e-01
5970	FPGT	1
5971	FPR1	7.645377e-01
Done

Running MutSig 2:
Scatter job 66: processing genes 5882 - 5971
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
FMN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.823649e-01	ci left: 8.414755e-03	ci right 1.247803e-02	k: 103	n:10000
Cons ci ratio: 5.830139e-01	ci left: 3.198812e-03	ci right 5.902342e-03	k: 44	n:10000
KS ci ratio: 1.135382e-01	ci left: 1.004217e-01	ci right 1.126086e-01	k: 1064	n:10000
FMN2   10000 perm   3 sec   (2951 perm/sec)   p_kst 1.064000e-01   p_cons 4.400000e-03   p_joint 1.030000e-02

Joint ci ratio: 4.012173e-01	ci left: 3.799699e-03	ci right 5.748583e-03	k: 94	n:20000
Cons ci ratio: 4.055288e-01	ci left: 3.709812e-03	ci right 5.638552e-03	k: 92	n:20000
KS ci ratio: 8.068851e-02	ci left: 1.012751e-01	ci right 1.098399e-01	k: 2110	n:20000
FMN2   20000 perm   11 sec   (1891 perm/sec)   p_kst 1.055000e-01   p_cons 4.600000e-03   p_joint 4.700000e-03

Joint ci ratio: 4.102971e-01	ci left: 2.413024e-03	ci right 3.686241e-03	k: 90	n:30000
Cons ci ratio: 3.430554e-01	ci left: 3.591244e-03	ci right 5.107218e-03	k: 129	n:30000
KS ci ratio: 6.459535e-02	ci left: 1.057906e-01	ci right 1.128853e-01	k: 3279	n:30000
FMN2   30000 perm   14 sec   (2102 perm/sec)   p_kst 1.093000e-01   p_cons 4.300000e-03   p_joint 3.000000e-03

Joint ci ratio: 3.634302e-01	ci left: 2.374173e-03	ci right 3.450008e-03	k: 115	n:40000
Cons ci ratio: 2.956716e-01	ci left: 3.728767e-03	ci right 5.044783e-03	k: 174	n:40000
KS ci ratio: 5.596534e-02	ci left: 1.061842e-01	ci right 1.123227e-01	k: 4369	n:40000
FMN2   40000 perm   18 sec   (2227 perm/sec)   p_kst 1.092250e-01   p_cons 4.350000e-03   p_joint 2.875000e-03

Joint ci ratio: 3.589144e-01	ci left: 1.953812e-03	ci right 2.825571e-03	k: 118	n:50000
Cons ci ratio: 2.649139e-01	ci left: 3.782748e-03	ci right 4.955943e-03	k: 217	n:50000
KS ci ratio: 4.961708e-02	ci left: 1.082196e-01	ci right 1.137456e-01	k: 5548	n:50000
FMN2   50000 perm   22 sec   (2297 perm/sec)   p_kst 1.109600e-01   p_cons 4.340000e-03   p_joint 2.360000e-03

Joint ci ratio: 3.667896e-01	ci left: 1.552377e-03	ci right 2.263855e-03	k: 113	n:60000
Cons ci ratio: 2.367069e-01	ci left: 4.011562e-03	ci right 5.103879e-03	k: 272	n:60000
KS ci ratio: 4.543539e-02	ci left: 1.078535e-01	ci right 1.128843e-01	k: 6621	n:60000
FMN2   60000 perm   26 sec   (2333 perm/sec)   p_kst 1.103500e-01   p_cons 4.533333e-03   p_joint 1.883333e-03

Joint ci ratio: 3.605584e-01	ci left: 1.382507e-03	ci right 2.002831e-03	k: 117	n:70000
Cons ci ratio: 2.193213e-01	ci left: 4.044673e-03	ci right 5.054216e-03	k: 317	n:70000
KS ci ratio: 4.209465e-02	ci left: 1.079035e-01	ci right 1.125575e-01	k: 7715	n:70000
FMN2   70000 perm   30 sec   (2357 perm/sec)   p_kst 1.102143e-01   p_cons 4.528571e-03   p_joint 1.671429e-03

Joint ci ratio: 3.668777e-01	ci left: 1.164237e-03	ci right 1.697972e-03	k: 113	n:80000
Cons ci ratio: 2.041512e-01	ci left: 4.119161e-03	ci right 5.067317e-03	k: 366	n:80000
KS ci ratio: 3.932157e-02	ci left: 1.083230e-01	ci right 1.126803e-01	k: 8839	n:80000
FMN2   80000 perm   34 sec   (2371 perm/sec)   p_kst 1.104875e-01   p_cons 4.575000e-03   p_joint 1.412500e-03

Joint ci ratio: 3.252741e-01	ci left: 1.349511e-03	ci right 1.883438e-03	k: 144	n:90000
Cons ci ratio: 1.881469e-01	ci left: 4.348330e-03	ci right 5.261815e-03	k: 431	n:90000
KS ci ratio: 3.717579e-02	ci left: 1.079078e-01	ci right 1.120063e-01	k: 9895	n:90000
FMN2   90000 perm   38 sec   (2377 perm/sec)   p_kst 1.099444e-01   p_cons 4.788889e-03   p_joint 1.600000e-03

Joint ci ratio: 2.212234e-01	ci left: 2.783823e-03	ci right 3.485487e-03	k: 312	n:100000
Cons ci ratio: 1.771982e-01	ci left: 4.438383e-03	ci right 5.310717e-03	k: 486	n:100000
KS ci ratio: 3.534134e-02	ci left: 1.076106e-01	ci right 1.114921e-01	k: 10954	n:100000
FMN2   100000 perm   42 sec   (2374 perm/sec)   p_kst 1.095400e-01   p_cons 4.860000e-03   p_joint 3.120000e-03

Joint ci ratio: 1.989131e-01	ci left: 3.168241e-03	ci right 3.876516e-03	k: 386	n:110000
Cons ci ratio: 1.860796e-01	ci left: 3.644249e-03	ci right 4.400452e-03	k: 441	n:110000
KS ci ratio: 3.365511e-02	ci left: 1.079402e-01	ci right 1.116441e-01	k: 12076	n:110000
FMN2   110000 perm   46 sec   (2367 perm/sec)   p_kst 1.097818e-01   p_cons 4.009091e-03   p_joint 3.509091e-03

Joint ci ratio: 1.986850e-01	ci left: 2.912100e-03	ci right 3.562273e-03	k: 387	n:120000
Cons ci ratio: 1.785638e-01	ci left: 3.642780e-03	ci right 4.364848e-03	k: 479	n:120000
KS ci ratio: 3.226210e-02	ci left: 1.077799e-01	ci right 1.113223e-01	k: 13145	n:120000
FMN2   120000 perm   51 sec   (2358 perm/sec)   p_kst 1.095417e-01   p_cons 3.991667e-03   p_joint 3.225000e-03

Joint ci ratio: 2.046123e-01	ci left: 2.527352e-03	ci right 3.110561e-03	k: 365	n:130000
Cons ci ratio: 1.534883e-01	ci left: 4.609014e-03	ci right 5.382550e-03	k: 648	n:130000
KS ci ratio: 3.096287e-02	ci left: 1.080595e-01	ci right 1.114656e-01	k: 14268	n:130000
FMN2   130000 perm   56 sec   (2342 perm/sec)   p_kst 1.097538e-01   p_cons 4.984615e-03   p_joint 2.807692e-03

Joint ci ratio: 1.586308e-01	ci left: 3.998274e-03	ci right 4.693929e-03	k: 607	n:140000
Cons ci ratio: 1.488631e-01	ci left: 4.561571e-03	ci right 5.302020e-03	k: 689	n:140000
KS ci ratio: 2.987986e-02	ci left: 1.078404e-01	ci right 1.111186e-01	k: 15326	n:140000
FMN2   140000 perm   60 sec   (2330 perm/sec)   p_kst 1.094714e-01   p_cons 4.921429e-03   p_joint 4.335714e-03

Joint ci ratio: 1.535397e-01	ci left: 3.994381e-03	ci right 4.665001e-03	k: 648	n:150000
Cons ci ratio: 1.451319e-01	ci left: 4.488627e-03	ci right 5.197388e-03	k: 725	n:150000
KS ci ratio: 2.890801e-02	ci left: 1.076193e-01	ci right 1.107825e-01	k: 16379	n:150000
FMN2   150000 perm   65 sec   (2317 perm/sec)   p_kst 1.091933e-01   p_cons 4.833333e-03   p_joint 4.320000e-03

Joint ci ratio: 2.003245e-01	ci left: 2.148361e-03	ci right 2.632452e-03	k: 381	n:160000
Cons ci ratio: 1.407427e-01	ci left: 4.485306e-03	ci right 5.170327e-03	k: 771	n:160000
KS ci ratio: 2.852062e-02	ci left: 1.040920e-01	ci right 1.071099e-01	k: 16895	n:160000
FMN2   160000 perm   70 sec   (2299 perm/sec)   p_kst 1.055938e-01   p_cons 4.818750e-03   p_joint 2.381250e-03

Joint ci ratio: 2.032935e-01	ci left: 1.960531e-03	ci right 2.409657e-03	k: 370	n:170000
Cons ci ratio: 1.361449e-01	ci left: 4.522438e-03	ci right 5.188738e-03	k: 824	n:170000
KS ci ratio: 2.761578e-02	ci left: 1.044995e-01	ci right 1.074316e-01	k: 18013	n:170000
FMN2   170000 perm   75 sec   (2276 perm/sec)   p_kst 1.059588e-01   p_cons 4.847059e-03   p_joint 2.176471e-03

Joint ci ratio: 1.993081e-01	ci left: 1.930743e-03	ci right 2.363320e-03	k: 385	n:180000
Cons ci ratio: 1.336635e-01	ci left: 4.437588e-03	ci right 5.078523e-03	k: 855	n:180000
KS ci ratio: 2.681622e-02	ci left: 1.046919e-01	ci right 1.075430e-01	k: 19100	n:180000
FMN2   180000 perm   80 sec   (2262 perm/sec)   p_kst 1.061111e-01   p_cons 4.750000e-03   p_joint 2.138889e-03

Joint ci ratio: 2.006257e-01	ci left: 1.804115e-03	ci right 2.211319e-03	k: 380	n:190000
Cons ci ratio: 1.303565e-01	ci left: 4.427961e-03	ci right 5.050456e-03	k: 899	n:190000
KS ci ratio: 2.609098e-02	ci left: 1.048024e-01	ci right 1.075781e-01	k: 20175	n:190000
FMN2   190000 perm   85 sec   (2246 perm/sec)   p_kst 1.061842e-01   p_cons 4.731579e-03   p_joint 2.000000e-03

Joint ci ratio: 1.967918e-01	ci left: 1.785176e-03	ci right 2.179482e-03	k: 395	n:200000
Cons ci ratio: 1.269460e-01	ci left: 4.443680e-03	ci right 5.050811e-03	k: 948	n:200000
KS ci ratio: 2.545509e-02	ci left: 1.046541e-01	ci right 1.073573e-01	k: 21200	n:200000
FMN2   200000 perm   90 sec   (2230 perm/sec)   p_kst 1.060000e-01   p_cons 4.740000e-03   p_joint 1.975000e-03

Joint ci ratio: 2.133641e-01	ci left: 1.433590e-03	ci right 1.780400e-03	k: 336	n:210000
Cons ci ratio: 1.241655e-01	ci left: 4.430405e-03	ci right 5.021489e-03	k: 991	n:210000
KS ci ratio: 2.482544e-02	ci left: 1.048096e-01	ci right 1.074489e-01	k: 22286	n:210000
FMN2   210000 perm   95 sec   (2215 perm/sec)   p_kst 1.061238e-01   p_cons 4.719048e-03   p_joint 1.600000e-03

Joint ci ratio: 2.099673e-01	ci left: 1.415775e-03	ci right 1.752121e-03	k: 347	n:220000
Cons ci ratio: 1.305446e-01	ci left: 3.815274e-03	ci right 4.352467e-03	k: 897	n:220000
KS ci ratio: 2.425077e-02	ci left: 1.048703e-01	ci right 1.074492e-01	k: 23354	n:220000
FMN2   220000 perm   100 sec   (2198 perm/sec)   p_kst 1.061545e-01   p_cons 4.077273e-03   p_joint 1.577273e-03

Joint ci ratio: 2.064399e-01	ci left: 1.403673e-03	ci right 1.730834e-03	k: 359	n:230000
Cons ci ratio: 1.276627e-01	ci left: 3.821897e-03	ci right 4.347243e-03	k: 938	n:230000
KS ci ratio: 2.372511e-02	ci left: 1.048399e-01	ci right 1.073614e-01	k: 24402	n:230000
FMN2   230000 perm   105 sec   (2181 perm/sec)   p_kst 1.060957e-01   p_cons 4.078261e-03   p_joint 1.560870e-03

Joint ci ratio: 2.025400e-01	ci left: 1.400533e-03	ci right 1.720032e-03	k: 373	n:240000
Cons ci ratio: 1.256087e-01	ci left: 3.787722e-03	ci right 4.299370e-03	k: 969	n:240000
KS ci ratio: 2.323681e-02	ci left: 1.047752e-01	ci right 1.072426e-01	k: 25441	n:240000
FMN2   240000 perm   111 sec   (2164 perm/sec)   p_kst 1.060042e-01   p_cons 4.037500e-03   p_joint 1.554167e-03

Joint ci ratio: 1.985968e-01	ci left: 1.401498e-03	ci right 1.714240e-03	k: 388	n:250000
Cons ci ratio: 1.235270e-01	ci left: 3.764097e-03	ci right 4.263510e-03	k: 1002	n:250000
KS ci ratio: 2.274578e-02	ci left: 1.049789e-01	ci right 1.073982e-01	k: 26546	n:250000
FMN2   250000 perm   117 sec   (2146 perm/sec)   p_kst 1.061840e-01   p_cons 4.008000e-03   p_joint 1.552000e-03

Joint ci ratio: 1.941547e-01	ci left: 1.413423e-03	ci right 1.720937e-03	k: 406	n:260000
Cons ci ratio: 1.214865e-01	ci left: 3.746084e-03	ci right 4.234306e-03	k: 1036	n:260000
KS ci ratio: 2.230944e-02	ci left: 1.049570e-01	ci right 1.073287e-01	k: 27596	n:260000
FMN2   260000 perm   122 sec   (2129 perm/sec)   p_kst 1.061385e-01   p_cons 3.984615e-03   p_joint 1.561538e-03

Joint ci ratio: 1.539261e-01	ci left: 2.211820e-03	ci right 2.584175e-03	k: 646	n:270000
Cons ci ratio: 1.189323e-01	ci left: 3.768998e-03	ci right 4.249153e-03	k: 1081	n:270000
KS ci ratio: 2.191227e-02	ci left: 1.048081e-01	ci right 1.071337e-01	k: 28611	n:270000
FMN2   270000 perm   128 sec   (2112 perm/sec)   p_kst 1.059667e-01   p_cons 4.003704e-03   p_joint 2.392593e-03

Joint ci ratio: 1.545323e-01	ci left: 2.115650e-03	ci right 2.473348e-03	k: 641	n:280000
Cons ci ratio: 1.167930e-01	ci left: 3.773037e-03	ci right 4.244464e-03	k: 1121	n:280000
KS ci ratio: 2.152501e-02	ci left: 1.047625e-01	ci right 1.070456e-01	k: 29652	n:280000
FMN2   280000 perm   134 sec   (2090 perm/sec)   p_kst 1.059000e-01   p_cons 4.003571e-03   p_joint 2.289286e-03

Joint ci ratio: 1.519510e-01	ci left: 2.115650e-03	ci right 2.466829e-03	k: 663	n:290000
Cons ci ratio: 1.145674e-01	ci left: 3.790268e-03	ci right 4.254213e-03	k: 1165	n:290000
KS ci ratio: 2.113833e-02	ci left: 1.048921e-01	ci right 1.071365e-01	k: 30743	n:290000
FMN2   290000 perm   140 sec   (2074 perm/sec)   p_kst 1.060103e-01   p_cons 4.017241e-03   p_joint 2.286207e-03

Joint ci ratio: 1.576506e-01	ci left: 1.894511e-03	ci right 2.221894e-03	k: 616	n:300000
Cons ci ratio: 1.127924e-01	ci left: 3.783751e-03	ci right 4.239246e-03	k: 1202	n:300000
KS ci ratio: 2.076922e-02	ci left: 1.050366e-01	ci right 1.072443e-01	k: 31841	n:300000
FMN2   300000 perm   146 sec   (2052 perm/sec)   p_kst 1.061367e-01   p_cons 4.006667e-03   p_joint 2.053333e-03

Joint ci ratio: 1.579125e-01	ci left: 1.827195e-03	ci right 2.143521e-03	k: 614	n:310000
Cons ci ratio: 1.107840e-01	ci left: 3.799663e-03	ci right 4.248396e-03	k: 1246	n:310000
KS ci ratio: 2.043023e-02	ci left: 1.050661e-01	ci right 1.072380e-01	k: 32906	n:310000
FMN2   310000 perm   152 sec   (2036 perm/sec)   p_kst 1.061484e-01   p_cons 4.019355e-03   p_joint 1.980645e-03

Joint ci ratio: 1.563960e-01	ci left: 1.806119e-03	ci right 2.115511e-03	k: 626	n:320000
Cons ci ratio: 1.090914e-01	ci left: 3.799447e-03	ci right 4.240859e-03	k: 1285	n:320000
KS ci ratio: 2.012323e-02	ci left: 1.049448e-01	ci right 1.070811e-01	k: 33923	n:320000
FMN2   320000 perm   158 sec   (2020 perm/sec)   p_kst 1.060094e-01   p_cons 4.015625e-03   p_joint 1.956250e-03

Joint ci ratio: 1.562759e-01	ci left: 1.754296e-03	ci right 2.054558e-03	k: 627	n:330000
Cons ci ratio: 1.073116e-01	ci left: 3.811090e-03	ci right 4.246175e-03	k: 1328	n:330000
KS ci ratio: 1.979799e-02	ci left: 1.051327e-01	ci right 1.072379e-01	k: 35040	n:330000
FMN2   330000 perm   165 sec   (2005 perm/sec)   p_kst 1.061818e-01   p_cons 4.024242e-03   p_joint 1.900000e-03

Joint ci ratio: 1.295586e-01	ci left: 2.511280e-03	ci right 2.861988e-03	k: 912	n:340000
Cons ci ratio: 1.054235e-01	ci left: 3.836423e-03	ci right 4.266215e-03	k: 1376	n:340000
KS ci ratio: 1.950826e-02	ci left: 1.051136e-01	ci right 1.071873e-01	k: 36090	n:340000
FMN2   340000 perm   171 sec   (1990 perm/sec)   p_kst 1.061471e-01   p_cons 4.047059e-03   p_joint 2.682353e-03

Joint ci ratio: 1.297061e-01	ci left: 2.433993e-03	ci right 2.774325e-03	k: 910	n:350000
Cons ci ratio: 1.036681e-01	ci left: 3.857587e-03	ci right 4.282117e-03	k: 1423	n:350000
KS ci ratio: 1.923146e-02	ci left: 1.050901e-01	ci right 1.071336e-01	k: 37138	n:350000
FMN2   350000 perm   177 sec   (1975 perm/sec)   p_kst 1.061086e-01   p_cons 4.065714e-03   p_joint 2.600000e-03

Joint ci ratio: 1.313100e-01	ci left: 2.307257e-03	ci right 2.634167e-03	k: 888	n:360000
Cons ci ratio: 1.020673e-01	ci left: 3.872218e-03	ci right 4.291382e-03	k: 1468	n:360000
KS ci ratio: 1.896250e-02	ci left: 1.051041e-01	ci right 1.071189e-01	k: 38199	n:360000
FMN2   360000 perm   184 sec   (1960 perm/sec)   p_kst 1.061083e-01   p_cons 4.077778e-03   p_joint 2.466667e-03

Joint ci ratio: 1.293598e-01	ci left: 2.315493e-03	ci right 2.638324e-03	k: 915	n:370000
Cons ci ratio: 1.005384e-01	ci left: 3.886105e-03	ci right 4.300100e-03	k: 1513	n:370000
KS ci ratio: 1.869069e-02	ci left: 1.052575e-01	ci right 1.072460e-01	k: 39312	n:370000
FMN2   370000 perm   190 sec   (1944 perm/sec)   p_kst 1.062486e-01   p_cons 4.089189e-03   p_joint 2.472973e-03

Joint ci ratio: 1.276299e-01	ci left: 2.318234e-03	ci right 2.636797e-03	k: 940	n:380000
Cons ci ratio: 9.946139e-02	ci left: 3.868507e-03	ci right 4.275955e-03	k: 1546	n:380000
KS ci ratio: 1.842538e-02	ci left: 1.054527e-01	ci right 1.074164e-01	k: 40444	n:380000
FMN2   380000 perm   197 sec   (1928 perm/sec)   p_kst 1.064316e-01   p_cons 4.068421e-03   p_joint 2.473684e-03

Joint ci ratio: 1.261640e-01	ci left: 2.313411e-03	ci right 2.627387e-03	k: 962	n:390000
Cons ci ratio: 9.832453e-02	ci left: 3.859338e-03	ci right 4.260906e-03	k: 1582	n:390000
KS ci ratio: 1.817668e-02	ci left: 1.055795e-01	ci right 1.075187e-01	k: 41553	n:390000
FMN2   390000 perm   204 sec   (1913 perm/sec)   p_kst 1.065462e-01   p_cons 4.056410e-03   p_joint 2.466667e-03

Joint ci ratio: 1.264975e-01	ci left: 2.243465e-03	ci right 2.548814e-03	k: 957	n:400000
Cons ci ratio: 9.689582e-02	ci left: 3.877488e-03	ci right 4.274749e-03	k: 1629	n:400000
KS ci ratio: 1.794415e-02	ci left: 1.056328e-01	ci right 1.075479e-01	k: 42635	n:400000
FMN2   400000 perm   211 sec   (1897 perm/sec)   p_kst 1.065875e-01   p_cons 4.072500e-03   p_joint 2.392500e-03

Joint ci ratio: 1.251339e-01	ci left: 2.238354e-03	ci right 2.539479e-03	k: 978	n:410000
Cons ci ratio: 9.575724e-02	ci left: 3.875745e-03	ci right 4.267900e-03	k: 1668	n:410000
KS ci ratio: 1.773235e-02	ci left: 1.055549e-01	ci right 1.074458e-01	k: 43664	n:410000
FMN2   410000 perm   218 sec   (1882 perm/sec)   p_kst 1.064976e-01   p_cons 4.068293e-03   p_joint 2.385366e-03

Joint ci ratio: 1.285379e-01	ci left: 2.067472e-03	ci right 2.353751e-03	k: 927	n:420000
Cons ci ratio: 9.446371e-02	ci left: 3.890386e-03	ci right 4.278410e-03	k: 1714	n:420000
KS ci ratio: 1.751822e-02	ci left: 1.055852e-01	ci right 1.074536e-01	k: 44737	n:420000
FMN2   420000 perm   225 sec   (1868 perm/sec)   p_kst 1.065167e-01   p_cons 4.080952e-03   p_joint 2.207143e-03

Joint ci ratio: 1.285412e-01	ci left: 2.019388e-03	ci right 2.299017e-03	k: 927	n:430000
Cons ci ratio: 9.295657e-02	ci left: 3.927096e-03	ci right 4.312192e-03	k: 1770	n:430000
KS ci ratio: 1.731908e-02	ci left: 1.055331e-01	ci right 1.073791e-01	k: 45775	n:430000
FMN2   430000 perm   232 sec   (1853 perm/sec)   p_kst 1.064535e-01   p_cons 4.116279e-03   p_joint 2.155814e-03

Joint ci ratio: 1.283367e-01	ci left: 1.980089e-03	ci right 2.253806e-03	k: 930	n:440000
Cons ci ratio: 9.210330e-02	ci left: 3.911106e-03	ci right 4.290924e-03	k: 1803	n:440000
KS ci ratio: 1.712576e-02	ci left: 1.054926e-01	ci right 1.073171e-01	k: 46817	n:440000
FMN2   440000 perm   239 sec   (1839 perm/sec)   p_kst 1.064023e-01   p_cons 4.097727e-03   p_joint 2.113636e-03

Joint ci ratio: 1.271814e-01	ci left: 1.972657e-03	ci right 2.242707e-03	k: 947	n:450000
Cons ci ratio: 9.107418e-02	ci left: 3.913217e-03	ci right 4.288768e-03	k: 1844	n:450000
KS ci ratio: 1.694075e-02	ci left: 1.054319e-01	ci right 1.072354e-01	k: 47849	n:450000
FMN2   450000 perm   246 sec   (1826 perm/sec)   p_kst 1.063311e-01   p_cons 4.097778e-03   p_joint 2.104444e-03

Joint ci ratio: 1.271171e-01	ci left: 1.931875e-03	ci right 2.196199e-03	k: 948	n:460000
Cons ci ratio: 9.005484e-02	ci left: 3.917384e-03	ci right 4.288905e-03	k: 1886	n:460000
KS ci ratio: 1.674800e-02	ci left: 1.055277e-01	ci right 1.073121e-01	k: 48952	n:460000
FMN2   460000 perm   254 sec   (1812 perm/sec)   p_kst 1.064174e-01   p_cons 4.100000e-03   p_joint 2.060870e-03

Joint ci ratio: 1.256038e-01	ci left: 1.938161e-03	ci right 2.199953e-03	k: 971	n:470000
Cons ci ratio: 8.902264e-02	ci left: 3.925557e-03	ci right 4.293364e-03	k: 1930	n:470000
KS ci ratio: 1.656650e-02	ci left: 1.055643e-01	ci right 1.073299e-01	k: 50029	n:470000
FMN2   470000 perm   261 sec   (1798 perm/sec)   p_kst 1.064447e-01   p_cons 4.106383e-03   p_joint 2.065957e-03

Joint ci ratio: 1.265229e-01	ci left: 1.869532e-03	ci right 2.124040e-03	k: 957	n:480000
Cons ci ratio: 8.824977e-02	ci left: 3.913036e-03	ci right 4.276323e-03	k: 1964	n:480000
KS ci ratio: 1.639490e-02	ci left: 1.055519e-01	ci right 1.072987e-01	k: 51083	n:480000
FMN2   480000 perm   269 sec   (1785 perm/sec)   p_kst 1.064229e-01   p_cons 4.091667e-03   p_joint 1.993750e-03

Joint ci ratio: 1.120894e-01	ci left: 2.350203e-03	ci right 2.631241e-03	k: 1219	n:490000
Cons ci ratio: 8.734325e-02	ci left: 3.915015e-03	ci right 4.274561e-03	k: 2005	n:490000
KS ci ratio: 1.622574e-02	ci left: 1.055725e-01	ci right 1.073015e-01	k: 52153	n:490000
FMN2   490000 perm   276 sec   (1772 perm/sec)   p_kst 1.064347e-01   p_cons 4.091837e-03   p_joint 2.487755e-03

Joint ci ratio: 1.138358e-01	ci left: 2.231282e-03	ci right 2.502536e-03	k: 1182	n:500000
Cons ci ratio: 8.631605e-02	ci left: 3.930631e-03	ci right 4.287152e-03	k: 2053	n:500000
KS ci ratio: 1.605598e-02	ci left: 1.056602e-01	ci right 1.073724e-01	k: 53257	n:500000
FMN2   500000 perm   284 sec   (1760 perm/sec)   p_kst 1.065140e-01   p_cons 4.106000e-03   p_joint 2.364000e-03

Joint ci ratio: 1.129802e-01	ci left: 2.221824e-03	ci right 2.489762e-03	k: 1200	n:510000
Cons ci ratio: 8.548775e-02	ci left: 3.930307e-03	ci right 4.283207e-03	k: 2093	n:510000
KS ci ratio: 1.589339e-02	ci left: 1.057211e-01	ci right 1.074167e-01	k: 54349	n:510000
FMN2   510000 perm   292 sec   (1746 perm/sec)   p_kst 1.065667e-01   p_cons 4.103922e-03   p_joint 2.352941e-03

Joint ci ratio: 1.120514e-01	ci left: 2.216475e-03	ci right 2.481426e-03	k: 1220	n:520000
Cons ci ratio: 8.454373e-02	ci left: 3.943188e-03	ci right 4.293142e-03	k: 2140	n:520000
KS ci ratio: 1.574566e-02	ci left: 1.056590e-01	ci right 1.073377e-01	k: 55378	n:520000
FMN2   520000 perm   300 sec   (1733 perm/sec)   p_kst 1.064962e-01   p_cons 4.115385e-03   p_joint 2.346154e-03

Joint ci ratio: 1.111452e-01	ci left: 2.211337e-03	ci right 2.473396e-03	k: 1240	n:530000
Cons ci ratio: 8.384220e-02	ci left: 3.935282e-03	ci right 4.281494e-03	k: 2176	n:530000
KS ci ratio: 1.559409e-02	ci left: 1.056952e-01	ci right 1.073582e-01	k: 56458	n:530000
FMN2   530000 perm   308 sec   (1720 perm/sec)   p_kst 1.065245e-01   p_cons 4.105660e-03   p_joint 2.339623e-03

Joint ci ratio: 1.136055e-01	ci left: 2.074988e-03	ci right 2.326696e-03	k: 1187	n:540000
Cons ci ratio: 8.298857e-02	ci left: 3.944002e-03	ci right 4.287278e-03	k: 2221	n:540000
KS ci ratio: 1.545012e-02	ci left: 1.056895e-01	ci right 1.073369e-01	k: 57516	n:540000
FMN2   540000 perm   316 sec   (1708 perm/sec)   p_kst 1.065111e-01   p_cons 4.112963e-03   p_joint 2.198148e-03

Joint ci ratio: 1.123356e-01	ci left: 2.084966e-03	ci right 2.334870e-03	k: 1214	n:550000
Cons ci ratio: 8.219691e-02	ci left: 3.948860e-03	ci right 4.289123e-03	k: 2264	n:550000
KS ci ratio: 1.531782e-02	ci left: 1.055881e-01	ci right 1.072197e-01	k: 58521	n:550000
FMN2   550000 perm   324 sec   (1697 perm/sec)   p_kst 1.064018e-01   p_cons 4.116364e-03   p_joint 2.207273e-03

Joint ci ratio: 1.122452e-01	ci left: 2.051203e-03	ci right 2.296850e-03	k: 1216	n:560000
Cons ci ratio: 8.144520e-02	ci left: 3.951811e-03	ci right 4.289066e-03	k: 2306	n:560000
KS ci ratio: 1.518415e-02	ci left: 1.055491e-01	ci right 1.071657e-01	k: 59559	n:560000
FMN2   560000 perm   333 sec   (1684 perm/sec)   p_kst 1.063554e-01   p_cons 4.117857e-03   p_joint 2.171429e-03

Joint ci ratio: 9.578341e-02	ci left: 2.789455e-03	ci right 3.071775e-03	k: 1669	n:570000
Cons ci ratio: 8.064482e-02	ci left: 3.961547e-03	ci right 4.296155e-03	k: 2352	n:570000
KS ci ratio: 1.504545e-02	ci left: 1.056181e-01	ci right 1.072210e-01	k: 60658	n:570000
FMN2   570000 perm   341 sec   (1672 perm/sec)   p_kst 1.064175e-01   p_cons 4.126316e-03   p_joint 2.928070e-03

Outputting figure to mutsig2_images.part000000000066/FMN2.28_5241_570000_0.10642_0.0041263_0.0029281.png
                gene_name: FMN2
               theta_stop: 0.096 
                    nperm: 570000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.0041 
      ci_cons_bounds_left: 0.0040 
     ci_cons_bounds_right: 0.0043 
                  p_joint: 0.0029 
     ci_joint_bounds_left: 0.0028 
    ci_joint_bounds_right: 0.0031 

Current progress: 2 percent done.
FN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.020829e-01	ci left: 1.219021e-01	ci right 1.351151e-01	k: 1284	n:10000
Cons ci ratio: 8.484586e-02	ci left: 1.683846e-01	ci right 1.834047e-01	k: 1758	n:10000
KS ci ratio: 1.125939e-01	ci left: 1.019814e-01	ci right 1.142479e-01	k: 1080	n:10000
FN1   10000 perm   3 sec   (2880 perm/sec)   p_kst 1.080000e-01   p_cons 1.758000e-01   p_joint 1.284000e-01

Joint ci ratio: 9.486915e-02	ci left: 7.490680e-02	ci right 8.241624e-02	k: 1572	n:20000
Cons ci ratio: 6.042364e-02	ci left: 1.685710e-01	ci right 1.791240e-01	k: 3476	n:20000
KS ci ratio: 7.965873e-02	ci left: 1.036815e-01	ci right 1.123328e-01	k: 2159	n:20000
FN1   20000 perm   7 sec   (2667 perm/sec)   p_kst 1.079500e-01   p_cons 1.738000e-01   p_joint 7.860000e-02

Outputting figure to mutsig2_images.part000000000066/FN1.21_7651_20000_0.10795_0.1738_0.0786.png
                gene_name: FN1
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.079 
     ci_joint_bounds_left: 0.075 
    ci_joint_bounds_right: 0.082 

Current progress: 5 percent done.
FOLH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.558433e-01	ci left: 5.484605e-02	ci right 6.421259e-02	k: 594	n:10000
Cons ci ratio: 7.984796e-02	ci left: 1.863882e-01	ci right 2.019904e-01	k: 1941	n:10000
KS ci ratio: 1.566850e-01	ci left: 5.426821e-02	ci right 6.359080e-02	k: 588	n:10000
FOLH1   10000 perm   2 sec   (4535 perm/sec)   p_kst 5.880000e-02   p_cons 1.941000e-01   p_joint 5.940000e-02

Joint ci ratio: 1.043132e-01	ci left: 6.249976e-02	ci right 6.942708e-02	k: 1318	n:20000
Cons ci ratio: 5.692600e-02	ci left: 1.861658e-01	ci right 1.971240e-01	k: 3832	n:20000
KS ci ratio: 1.107455e-01	ci left: 5.567637e-02	ci right 6.225258e-02	k: 1178	n:20000
FOLH1   20000 perm   5 sec   (4148 perm/sec)   p_kst 5.890000e-02   p_cons 1.916000e-01   p_joint 6.590000e-02

Joint ci ratio: 7.545707e-02	ci left: 7.941059e-02	ci right 8.567053e-02	k: 2475	n:30000
Cons ci ratio: 4.648259e-02	ci left: 1.871599e-01	ci right 1.960999e-01	k: 5748	n:30000
KS ci ratio: 8.965876e-02	ci left: 5.720815e-02	ci right 6.261080e-02	k: 1796	n:30000
FOLH1   30000 perm   8 sec   (3993 perm/sec)   p_kst 5.986667e-02   p_cons 1.916000e-01   p_joint 8.250000e-02

Outputting figure to mutsig2_images.part000000000066/FOLH1.11_2329_30000_0.059867_0.1916_0.0825.png
                gene_name: FOLH1
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.060 
        ci_ks_bounds_left: 0.057 
       ci_ks_bounds_right: 0.063 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.083 
     ci_joint_bounds_left: 0.079 
    ci_joint_bounds_right: 0.086 

Current progress: 7 percent done.
FNDC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.276362e-02	ci left: 8.982632e-01	ci right 9.099002e-01	k: 9042	n:10000
Cons ci ratio: 2.750894e-02	ci left: 6.606855e-01	ci right 6.792154e-01	k: 6700	n:10000
KS ci ratio: 2.373042e-02	ci left: 7.230002e-01	ci right 7.404646e-01	k: 7318	n:10000
FNDC1   10000 perm   3 sec   (3513 perm/sec)   p_kst 7.318000e-01   p_cons 6.700000e-01   p_joint 9.042000e-01

Outputting figure to mutsig2_images.part000000000066/FNDC1.8_5777_10000_0.7318_0.67_0.9042.png
                gene_name: FNDC1
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 10 percent done.
FNDC3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.296963e-02	ci left: 7.357303e-01	ci right 7.529272e-01	k: 7444	n:10000
Cons ci ratio: 5.580505e-02	ci left: 3.210824e-01	ci right 3.396165e-01	k: 3303	n:10000
KS ci ratio: 1.406444e-02	ci left: 8.796083e-01	ci right 8.921659e-01	k: 8860	n:10000
FNDC3B   10000 perm   2 sec   (4055 perm/sec)   p_kst 8.860000e-01   p_cons 3.303000e-01   p_joint 7.444000e-01

Outputting figure to mutsig2_images.part000000000066/FNDC3B.8_3715_10000_0.886_0.3303_0.7444.png
                gene_name: FNDC3B
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.75 

Current progress: 12 percent done.
FMN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.892077e-02	ci left: 4.936506e-01	ci right 5.133474e-01	k: 5035	n:10000
Cons ci ratio: 7.494614e-02	ci left: 2.066861e-01	ci right 2.228804e-01	k: 2147	n:10000
KS ci ratio: 2.572823e-02	ci left: 6.898019e-01	ci right 7.078821e-01	k: 6989	n:10000
FMN1   10000 perm   2 sec   (4156 perm/sec)   p_kst 6.989000e-01   p_cons 2.147000e-01   p_joint 5.035000e-01

Outputting figure to mutsig2_images.part000000000066/FMN1.6_3659_10000_0.6989_0.2147_0.5035.png
                gene_name: FMN1
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 15 percent done.
FNBP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.713657e-02	ci left: 6.667271e-01	ci right 6.851703e-01	k: 6760	n:10000
Cons ci ratio: 2.744056e-02	ci left: 6.617930e-01	ci right 6.803073e-01	k: 6711	n:10000
KS ci ratio: 3.961964e-02	ci left: 4.847535e-01	ci right 5.044496e-01	k: 4946	n:10000
FNBP4   10000 perm   2 sec   (4736 perm/sec)   p_kst 4.946000e-01   p_cons 6.711000e-01   p_joint 6.760000e-01

Outputting figure to mutsig2_images.part000000000066/FNBP4.6_3122_10000_0.4946_0.6711_0.676.png
                gene_name: FNBP4
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 17 percent done.
FOLH1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.459254e-01	ci left: 6.236946e-02	ci right 7.228440e-02	k: 672	n:10000
Cons ci ratio: 2.463854e-02	ci left: 7.078571e-01	ci right 7.256165e-01	k: 7168	n:10000
KS ci ratio: 2.195183e-01	ci left: 2.750089e-02	ci right 3.437595e-02	k: 308	n:10000
FOLH1B   10000 perm   2 sec   (5300 perm/sec)   p_kst 3.080000e-02   p_cons 7.168000e-01   p_joint 6.720000e-02

Joint ci ratio: 9.460828e-02	ci left: 7.529807e-02	ci right 8.282484e-02	k: 1580	n:20000
Cons ci ratio: 1.682723e-02	ci left: 7.244939e-01	ci right 7.368389e-01	k: 14614	n:20000
KS ci ratio: 1.569380e-01	ci left: 2.787170e-02	ci right 3.266616e-02	k: 604	n:20000
FOLH1B   20000 perm   4 sec   (4722 perm/sec)   p_kst 3.020000e-02   p_cons 7.307000e-01   p_joint 7.900000e-02

Joint ci ratio: 9.049195e-02	ci left: 5.619672e-02	ci right 6.155577e-02	k: 1765	n:30000
Cons ci ratio: 1.403761e-02	ci left: 7.170599e-01	ci right 7.272303e-01	k: 21665	n:30000
KS ci ratio: 1.275258e-01	ci left: 2.858305e-02	ci right 3.250857e-02	k: 915	n:30000
FOLH1B   30000 perm   7 sec   (4487 perm/sec)   p_kst 3.050000e-02   p_cons 7.221667e-01   p_joint 5.883333e-02

Joint ci ratio: 8.199503e-02	ci left: 5.182952e-02	ci right 5.628550e-02	k: 2161	n:40000
Cons ci ratio: 1.208328e-02	ci left: 7.201936e-01	ci right 7.289738e-01	k: 28984	n:40000
KS ci ratio: 1.112580e-01	ci left: 2.842294e-02	ci right 3.179574e-02	k: 1203	n:40000
FOLH1B   40000 perm   9 sec   (4342 perm/sec)   p_kst 3.007500e-02   p_cons 7.246000e-01   p_joint 5.402500e-02

Joint ci ratio: 7.500363e-02	ci left: 4.985385e-02	ci right 5.375840e-02	k: 2589	n:50000
Cons ci ratio: 1.081955e-02	ci left: 7.202196e-01	ci right 7.280744e-01	k: 36208	n:50000
KS ci ratio: 9.913947e-02	ci left: 2.881486e-02	ci right 3.184000e-02	k: 1515	n:50000
FOLH1B   50000 perm   12 sec   (4211 perm/sec)   p_kst 3.030000e-02   p_cons 7.241600e-01   p_joint 5.178000e-02

Outputting figure to mutsig2_images.part000000000066/FOLH1B.6_1377_50000_0.0303_0.72416_0.05178.png
                gene_name: FOLH1B
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.030 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.052 
     ci_joint_bounds_left: 0.050 
    ci_joint_bounds_right: 0.054 

Current progress: 20 percent done.
FOXG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.075295e-01	ci left: 1.109577e-01	ci right 1.236661e-01	k: 1172	n:10000
Cons ci ratio: 1.453474e-01	ci left: 6.285242e-02	ci right 7.280114e-02	k: 677	n:10000
KS ci ratio: 8.197598e-02	ci left: 1.784159e-01	ci right 1.937674e-01	k: 1860	n:10000
FOXG1   10000 perm   2 sec   (5557 perm/sec)   p_kst 1.860000e-01   p_cons 6.770000e-02   p_joint 1.172000e-01

Joint ci ratio: 9.336355e-02	ci left: 7.720594e-02	ci right 8.481639e-02	k: 1619	n:20000
Cons ci ratio: 1.097596e-01	ci left: 5.665039e-02	ci right 6.327826e-02	k: 1198	n:20000
KS ci ratio: 5.794743e-02	ci left: 1.807766e-01	ci right 1.916148e-01	k: 3723	n:20000
FOXG1   20000 perm   4 sec   (4921 perm/sec)   p_kst 1.861500e-01   p_cons 5.990000e-02   p_joint 8.095000e-02

Joint ci ratio: 6.295851e-02	ci left: 1.108190e-01	ci right 1.180559e-01	k: 3432	n:30000
Cons ci ratio: 8.921076e-02	ci left: 5.776290e-02	ci right 6.318927e-02	k: 1813	n:30000
KS ci ratio: 4.670380e-02	ci left: 1.857064e-01	ci right 1.946203e-01	k: 5704	n:30000
FOXG1   30000 perm   6 sec   (4674 perm/sec)   p_kst 1.901333e-01   p_cons 6.043333e-02   p_joint 1.144000e-01

Outputting figure to mutsig2_images.part000000000066/FOXG1.5_1474_30000_0.19013_0.060433_0.1144.png
                gene_name: FOXG1
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.060 
      ci_cons_bounds_left: 0.058 
     ci_cons_bounds_right: 0.063 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 22 percent done.
FMO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.951618e-02	ci left: 1.536497e-01	ci right 1.681484e-01	k: 1608	n:10000
Cons ci ratio: 1.185194e-01	ci left: 9.272705e-02	ci right 1.045080e-01	k: 985	n:10000
KS ci ratio: 6.584068e-02	ci left: 2.530063e-01	ci right 2.703328e-01	k: 2616	n:10000
FMO1   10000 perm   2 sec   (5244 perm/sec)   p_kst 2.616000e-01   p_cons 9.850000e-02   p_joint 1.608000e-01

Joint ci ratio: 6.953848e-02	ci left: 1.323119e-01	ci right 1.418939e-01	k: 2741	n:20000
Cons ci ratio: 8.440230e-02	ci left: 9.322640e-02	ci right 1.014911e-01	k: 1946	n:20000
KS ci ratio: 4.717921e-02	ci left: 2.505081e-01	ci right 2.626628e-01	k: 5131	n:20000
FMO1   20000 perm   4 sec   (4688 perm/sec)   p_kst 2.565500e-01   p_cons 9.730000e-02   p_joint 1.370500e-01

Outputting figure to mutsig2_images.part000000000066/FMO1.4_1631_20000_0.25655_0.0973_0.13705.png
                gene_name: FMO1
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.097 
      ci_cons_bounds_left: 0.093 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 24 percent done.
FMO3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.159149e-02	ci left: 5.965440e-01	ci right 6.157941e-01	k: 6062	n:10000
Cons ci ratio: 1.139871e-02	ci left: 9.166731e-01	ci right 9.272795e-01	k: 9221	n:10000
KS ci ratio: 4.306825e-02	ci left: 4.432085e-01	ci right 4.628189e-01	k: 4530	n:10000
FMO3   10000 perm   2 sec   (5486 perm/sec)   p_kst 4.530000e-01   p_cons 9.221000e-01   p_joint 6.062000e-01

Outputting figure to mutsig2_images.part000000000066/FMO3.4_1631_10000_0.453_0.9221_0.6062.png
                gene_name: FMO3
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 27 percent done.
FMO4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.726052e-02	ci left: 6.647131e-01	ci right 6.831855e-01	k: 6740	n:10000
Cons ci ratio: 3.319667e-02	ci left: 5.725610e-01	ci right 5.919910e-01	k: 5823	n:10000
KS ci ratio: 3.391837e-02	ci left: 5.620320e-01	ci right 5.815262e-01	k: 5718	n:10000
FMO4   10000 perm   2 sec   (5462 perm/sec)   p_kst 5.718000e-01   p_cons 5.823000e-01   p_joint 6.740000e-01

Outputting figure to mutsig2_images.part000000000066/FMO4.4_1709_10000_0.5718_0.5823_0.674.png
                gene_name: FMO4
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 29 percent done.
FMR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.738916e-02	ci left: 8.281881e-01	ci right 8.428159e-01	k: 8356	n:10000
Cons ci ratio: 2.483886e-02	ci left: 7.045272e-01	ci right 7.223483e-01	k: 7135	n:10000
KS ci ratio: 2.778304e-02	ci left: 6.562561e-01	ci right 6.748474e-01	k: 6656	n:10000
FMR1   10000 perm   2 sec   (5103 perm/sec)   p_kst 6.656000e-01   p_cons 7.135000e-01   p_joint 8.356000e-01

Outputting figure to mutsig2_images.part000000000066/FMR1.4_1967_10000_0.6656_0.7135_0.8356.png
                gene_name: FMR1
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 32 percent done.
FNTA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.377316e-02	ci left: 5.641375e-01	ci right 5.836195e-01	k: 5739	n:10000
Cons ci ratio: 1.648870e-02	ci left: 8.425440e-01	ci right 8.566516e-01	k: 8497	n:10000
KS ci ratio: 3.886633e-02	ci left: 4.943505e-01	ci right 5.140471e-01	k: 5042	n:10000
FNTA   10000 perm   2 sec   (5701 perm/sec)   p_kst 5.042000e-01   p_cons 8.497000e-01   p_joint 5.739000e-01

Outputting figure to mutsig2_images.part000000000066/FNTA.4_1176_10000_0.5042_0.8497_0.5739.png
                gene_name: FNTA
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 34 percent done.
FOXP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.207059e-02	ci left: 7.507962e-01	ci right 7.676526e-01	k: 7593	n:10000
Cons ci ratio: 7.219193e-02	ci left: 2.194125e-01	ci right 2.359465e-01	k: 2276	n:10000
KS ci ratio: 2.066714e-02	ci left: 7.742826e-01	ci right 7.905526e-01	k: 7825	n:10000
FOXP1   10000 perm   2 sec   (4969 perm/sec)   p_kst 7.825000e-01   p_cons 2.276000e-01   p_joint 7.593000e-01

Outputting figure to mutsig2_images.part000000000066/FOXP1.4_2267_10000_0.7825_0.2276_0.7593.png
                gene_name: FOXP1
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 37 percent done.
FOXP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.694906e-02	ci left: 2.466773e-01	ci right 2.638654e-01	k: 2552	n:10000
Cons ci ratio: 5.808866e-02	ci left: 3.037185e-01	ci right 3.219906e-01	k: 3128	n:10000
KS ci ratio: 9.291121e-02	ci left: 1.440348e-01	ci right 1.581691e-01	k: 1510	n:10000
FOXP2   10000 perm   2 sec   (5120 perm/sec)   p_kst 1.510000e-01   p_cons 3.128000e-01   p_joint 2.552000e-01

Outputting figure to mutsig2_images.part000000000066/FOXP2.4_2379_10000_0.151_0.3128_0.2552.png
                gene_name: FOXP2
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 39 percent done.
FPGT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.147853e-02	ci left: 4.618753e-01	ci right 4.815412e-01	k: 4717	n:10000
Cons ci ratio: 2.141821e-02	ci left: 7.617251e-01	ci right 7.783173e-01	k: 7701	n:10000
KS ci ratio: 6.023687e-02	ci left: 2.884508e-01	ci right 3.064673e-01	k: 2974	n:10000
FPGT   10000 perm   2 sec   (5624 perm/sec)   p_kst 2.974000e-01   p_cons 7.701000e-01   p_joint 4.717000e-01

Outputting figure to mutsig2_images.part000000000066/FPGT.4_1801_10000_0.2974_0.7701_0.4717.png
                gene_name: FPGT
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 41 percent done.
FMO2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.011368e-01	ci left: 1.239561e-01	ci right 1.372599e-01	k: 1305	n:10000
Cons ci ratio: 1.172700e-01	ci left: 9.457666e-02	ci right 1.064572e-01	k: 1004	n:10000
KS ci ratio: 5.692071e-02	ci left: 3.124482e-01	ci right 3.308558e-01	k: 3216	n:10000
FMO2   10000 perm   2 sec   (6097 perm/sec)   p_kst 3.216000e-01   p_cons 1.004000e-01   p_joint 1.305000e-01

Joint ci ratio: 8.731397e-02	ci left: 8.753876e-02	ci right 9.558044e-02	k: 1830	n:20000
Cons ci ratio: 8.322351e-02	ci left: 9.567937e-02	ci right 1.040374e-01	k: 1996	n:20000
KS ci ratio: 4.028599e-02	ci left: 3.147798e-01	ci right 3.277722e-01	k: 6425	n:20000
FMO2   20000 perm   4 sec   (5362 perm/sec)   p_kst 3.212500e-01   p_cons 9.980000e-02   p_joint 9.150000e-02

Outputting figure to mutsig2_images.part000000000066/FMO2.3_1448_20000_0.32125_0.0998_0.0915.png
                gene_name: FMO2
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.100 
      ci_cons_bounds_left: 0.096 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.091 
     ci_joint_bounds_left: 0.088 
    ci_joint_bounds_right: 0.096 

Current progress: 44 percent done.
FNIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.000817e-01	ci left: 1.263042e-01	ci right 1.397104e-01	k: 1329	n:10000
Cons ci ratio: 5.595672e-02	ci left: 3.198913e-01	ci right 3.384084e-01	k: 3291	n:10000
KS ci ratio: 1.018556e-01	ci left: 1.223911e-01	ci right 1.356258e-01	k: 1289	n:10000
FNIP1   10000 perm   2 sec   (4767 perm/sec)   p_kst 1.289000e-01   p_cons 3.291000e-01   p_joint 1.329000e-01

Joint ci ratio: 4.909636e-02	ci left: 2.357301e-01	ci right 2.476451e-01	k: 4833	n:20000
Cons ci ratio: 3.971117e-02	ci left: 3.210461e-01	ci right 3.341040e-01	k: 6551	n:20000
KS ci ratio: 7.249256e-02	ci left: 1.229069e-01	ci right 1.322016e-01	k: 2550	n:20000
FNIP1   20000 perm   5 sec   (4268 perm/sec)   p_kst 1.275000e-01   p_cons 3.275500e-01   p_joint 2.416500e-01

Outputting figure to mutsig2_images.part000000000066/FNIP1.3_3573_20000_0.1275_0.32755_0.24165.png
                gene_name: FNIP1
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 46 percent done.
FOXC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.046744e-02	ci left: 3.666925e-01	ci right 3.857796e-01	k: 3762	n:10000
Cons ci ratio: 1.148705e-01	ci left: 9.827781e-02	ci right 1.103538e-01	k: 1042	n:10000
KS ci ratio: 4.703560e-03	ci left: 9.833923e-01	ci right 9.881185e-01	k: 9859	n:10000
FOXC2   10000 perm   2 sec   (5696 perm/sec)   p_kst 9.859000e-01   p_cons 1.042000e-01   p_joint 3.762000e-01

Joint ci ratio: 3.291012e-02	ci left: 4.081092e-01	ci right 4.218155e-01	k: 8299	n:20000
Cons ci ratio: 8.481310e-02	ci left: 9.239258e-02	ci right 1.006252e-01	k: 1929	n:20000
KS ci ratio: 3.308470e-03	ci left: 9.842741e-01	ci right 9.875824e-01	k: 19720	n:20000
FOXC2   20000 perm   4 sec   (5147 perm/sec)   p_kst 9.860000e-01   p_cons 9.645000e-02   p_joint 4.149500e-01

Outputting figure to mutsig2_images.part000000000066/FOXC2.3_1510_20000_0.986_0.09645_0.41495.png
                gene_name: FOXC2
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.096 
      ci_cons_bounds_left: 0.092 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.42 

Current progress: 49 percent done.
FOXD4L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.616684e-02	ci left: 2.013622e-01	ci right 2.174074e-01	k: 2093	n:10000
Cons ci ratio: 4.607595e-02	ci left: 4.101016e-01	ci right 4.295451e-01	k: 4198	n:10000
KS ci ratio: 8.216589e-02	ci left: 1.777272e-01	ci right 1.930565e-01	k: 1853	n:10000
FOXD4L1   10000 perm   2 sec   (5956 perm/sec)   p_kst 1.853000e-01   p_cons 4.198000e-01   p_joint 2.093000e-01

Outputting figure to mutsig2_images.part000000000066/FOXD4L1.3_1231_10000_0.1853_0.4198_0.2093.png
                gene_name: FOXD4L1
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 51 percent done.
FOXO4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.045260e-02	ci left: 4.743609e-01	ci right 4.940483e-01	k: 4842	n:10000
Cons ci ratio: 5.377486e-02	ci left: 3.375666e-01	ci right 3.563226e-01	k: 3469	n:10000
KS ci ratio: 5.188359e-02	ci left: 3.538645e-01	ci right 3.728152e-01	k: 3633	n:10000
FOXO4   10000 perm   2 sec   (6032 perm/sec)   p_kst 3.633000e-01   p_cons 3.469000e-01   p_joint 4.842000e-01

Outputting figure to mutsig2_images.part000000000066/FOXO4.3_1530_10000_0.3633_0.3469_0.4842.png
                gene_name: FOXO4
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 54 percent done.
FLYWCH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.115201e-02	ci left: 7.661798e-01	ci right 7.826601e-01	k: 7745	n:10000
Cons ci ratio: 4.895376e-02	ci left: 3.810207e-01	ci right 4.002431e-01	k: 3906	n:10000
KS ci ratio: 1.434813e-02	ci left: 8.754132e-01	ci right 8.881634e-01	k: 8819	n:10000
FLYWCH1   10000 perm   2 sec   (5784 perm/sec)   p_kst 8.819000e-01   p_cons 3.906000e-01   p_joint 7.745000e-01

Outputting figure to mutsig2_images.part000000000066/FLYWCH1.2_2184_10000_0.8819_0.3906_0.7745.png
                gene_name: FLYWCH1
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 56 percent done.
FMNL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.560629e-02	ci left: 4.150847e-01	ci right 4.345591e-01	k: 4248	n:10000
Cons ci ratio: 2.655002e-02	ci left: 6.762965e-01	ci right 6.945953e-01	k: 6855	n:10000
KS ci ratio: 8.974894e-02	ci left: 1.529626e-01	ci right 1.674359e-01	k: 1601	n:10000
FMNL1   10000 perm   2 sec   (5351 perm/sec)   p_kst 1.601000e-01   p_cons 6.855000e-01   p_joint 4.248000e-01

Outputting figure to mutsig2_images.part000000000066/FMNL1.2_3407_10000_0.1601_0.6855_0.4248.png
                gene_name: FMNL1
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.43 

Current progress: 59 percent done.
FMNL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.602251e-02	ci left: 5.322739e-01	ci right 5.519016e-01	k: 5421	n:10000
Cons ci ratio: 4.453122e-02	ci left: 4.267492e-01	ci right 4.462878e-01	k: 4365	n:10000
KS ci ratio: 7.523615e-02	ci left: 2.054042e-01	ci right 2.215630e-01	k: 2134	n:10000
FMNL3   10000 perm   2 sec   (5415 perm/sec)   p_kst 2.134000e-01   p_cons 4.365000e-01   p_joint 5.421000e-01

Outputting figure to mutsig2_images.part000000000066/FMNL3.2_3188_10000_0.2134_0.4365_0.5421.png
                gene_name: FMNL3
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 61 percent done.
FMO5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.918818e-03	ci left: 9.880698e-01	ci right 9.920369e-01	k: 9902	n:10000
Cons ci ratio: 1.629469e-02	ci left: 8.456012e-01	ci right 8.595928e-01	k: 8527	n:10000
KS ci ratio: 3.592106e-02	ci left: 5.336759e-01	ci right 5.532988e-01	k: 5435	n:10000
FMO5   10000 perm   2 sec   (6019 perm/sec)   p_kst 5.435000e-01   p_cons 8.527000e-01   p_joint 9.902000e-01

Outputting figure to mutsig2_images.part000000000066/FMO5.2_1777_10000_0.5435_0.8527_0.9902.png
                gene_name: FMO5
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 63 percent done.
FMOD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.909827e-02	ci left: 6.352285e-01	ci right 6.540872e-01	k: 6447	n:10000
Cons ci ratio: 2.793293e-02	ci left: 6.538404e-01	ci right 6.724645e-01	k: 6632	n:10000
KS ci ratio: 1.489128e-01	ci left: 5.995589e-02	ci right 6.969950e-02	k: 647	n:10000
FMOD   10000 perm   2 sec   (6157 perm/sec)   p_kst 6.470000e-02   p_cons 6.632000e-01   p_joint 6.447000e-01

Joint ci ratio: 1.129805e-02	ci left: 8.526292e-01	ci right 8.623667e-01	k: 17151	n:20000
Cons ci ratio: 2.041507e-02	ci left: 6.416361e-01	ci right 6.549208e-01	k: 12966	n:20000
KS ci ratio: 1.059125e-01	ci left: 6.069528e-02	ci right 6.753211e-02	k: 1281	n:20000
FMOD   20000 perm   4 sec   (5494 perm/sec)   p_kst 6.405000e-02   p_cons 6.483000e-01   p_joint 8.575500e-01

Joint ci ratio: 2.693743e-02	ci left: 4.081854e-01	ci right 4.193646e-01	k: 12413	n:30000
Cons ci ratio: 1.656442e-02	ci left: 6.457424e-01	ci right 6.565616e-01	k: 19535	n:30000
KS ci ratio: 8.765260e-02	ci left: 5.975402e-02	ci right 6.526442e-02	k: 1874	n:30000
FMOD   30000 perm   6 sec   (5225 perm/sec)   p_kst 6.246667e-02   p_cons 6.511667e-01   p_joint 4.137667e-01

Outputting figure to mutsig2_images.part000000000066/FMOD.2_1139_30000_0.062467_0.65117_0.41377.png
                gene_name: FMOD
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.062 
        ci_ks_bounds_left: 0.060 
       ci_ks_bounds_right: 0.065 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.42 

Current progress: 66 percent done.
FMR1NB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.430680e-02	ci left: 8.760270e-01	ci right 8.887493e-01	k: 8825	n:10000
KS ci ratio: 1.594303e-02	ci left: 8.511065e-01	ci right 8.648842e-01	k: 8581	n:10000
FMR1NB   10000 perm   1 sec   (6979 perm/sec)   p_kst 8.581000e-01   p_cons 8.825000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000066/FMR1NB.2_788_10000_0.8581_0.8825_1.png
                gene_name: FMR1NB
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
FNDC7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.521745e-02	ci left: 5.434917e-01	ci right 5.630773e-01	k: 5533	n:10000
KS ci ratio: 2.825866e-02	ci left: 6.486074e-01	ci right 6.673005e-01	k: 6580	n:10000
FNDC7   10000 perm   2 sec   (5777 perm/sec)   p_kst 6.580000e-01   p_cons 5.533000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000066/FNDC7.2_2250_10000_0.658_0.5533_1.png
                gene_name: FNDC7
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
FOLR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.220959e-02	ci left: 4.531890e-01	ci right 4.728325e-01	k: 4630	n:10000
Cons ci ratio: 7.289692e-02	ci left: 2.160571e-01	ci right 2.325038e-01	k: 2242	n:10000
KS ci ratio: 2.795168e-02	ci left: 6.535385e-01	ci right 6.721666e-01	k: 6629	n:10000
FOLR3   10000 perm   2 sec   (6657 perm/sec)   p_kst 6.629000e-01   p_cons 2.242000e-01   p_joint 4.630000e-01

Outputting figure to mutsig2_images.part000000000066/FOLR3.2_752_10000_0.6629_0.2242_0.463.png
                gene_name: FOLR3
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 73 percent done.
FOS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.224974e-03	ci left: 9.430505e-01	ci right 9.518865e-01	k: 9476	n:10000
Cons ci ratio: 4.413521e-02	ci left: 4.311373e-01	ci right 4.506972e-01	k: 4409	n:10000
KS ci ratio: 3.341548e-02	ci left: 5.693517e-01	ci right 5.888022e-01	k: 5791	n:10000
FOS   10000 perm   2 sec   (6339 perm/sec)   p_kst 5.791000e-01   p_cons 4.409000e-01   p_joint 9.476000e-01

Outputting figure to mutsig2_images.part000000000066/FOS.2_1159_10000_0.5791_0.4409_0.9476.png
                gene_name: FOS
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 76 percent done.
FOXC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.018502e-02	ci left: 1.516867e-01	ci right 1.661126e-01	k: 1588	n:10000
KS ci ratio: 1.395289e-02	ci left: 8.812461e-01	ci right 8.937272e-01	k: 8876	n:10000
FOXC1   10000 perm   2 sec   (6119 perm/sec)   p_kst 8.876000e-01   p_cons 1.588000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000066/FOXC1.2_1666_10000_0.8876_0.1588_1.png
                gene_name: FOXC1
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
FOXF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.939100e-02	ci left: 6.306030e-01	ci right 6.495153e-01	k: 6401	n:10000
Cons ci ratio: 3.762664e-02	ci left: 5.105536e-01	ci right 5.302345e-01	k: 5204	n:10000
KS ci ratio: 5.108585e-02	ci left: 3.610234e-01	ci right 3.800520e-01	k: 3705	n:10000
FOXF1   10000 perm   1 sec   (6737 perm/sec)   p_kst 3.705000e-01   p_cons 5.204000e-01   p_joint 6.401000e-01

Outputting figure to mutsig2_images.part000000000066/FOXF1.2_1148_10000_0.3705_0.5204_0.6401.png
                gene_name: FOXF1
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 80 percent done.
FOXH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.628204e-02	ci left: 2.008694e-01	ci right 2.169006e-01	k: 2088	n:10000
Cons ci ratio: 8.392110e-02	ci left: 1.715307e-01	ci right 1.866567e-01	k: 1790	n:10000
KS ci ratio: 7.235652e-02	ci left: 2.186229e-01	ci right 2.351365e-01	k: 2268	n:10000
FOXH1   10000 perm   1 sec   (6849 perm/sec)   p_kst 2.268000e-01   p_cons 1.790000e-01   p_joint 2.088000e-01

Outputting figure to mutsig2_images.part000000000066/FOXH1.2_1110_10000_0.2268_0.179_0.2088.png
                gene_name: FOXH1
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 83 percent done.
FOXI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.648198e-02	ci left: 5.259661e-01	ci right 5.456130e-01	k: 5358	n:10000
KS ci ratio: 5.392946e-02	ci left: 3.362752e-01	ci right 3.550148e-01	k: 3456	n:10000
FOXI1   10000 perm   2 sec   (6317 perm/sec)   p_kst 3.456000e-01   p_cons 5.358000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000066/FOXI1.2_1145_10000_0.3456_0.5358_1.png
                gene_name: FOXI1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 85 percent done.
FOXK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.921421e-02	ci left: 7.984155e-01	ci right 8.140057e-01	k: 8063	n:10000
Cons ci ratio: 5.244895e-02	ci left: 3.488943e-01	ci right 3.677882e-01	k: 3583	n:10000
KS ci ratio: 2.768326e-02	ci left: 6.578667e-01	ci right 6.764359e-01	k: 6672	n:10000
FOXK2   10000 perm   2 sec   (5838 perm/sec)   p_kst 6.672000e-01   p_cons 3.583000e-01   p_joint 8.063000e-01

Outputting figure to mutsig2_images.part000000000066/FOXK2.2_2019_10000_0.6672_0.3583_0.8063.png
                gene_name: FOXK2
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 88 percent done.
FOXN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.052749e-02	ci left: 7.766130e-01	ci right 7.928209e-01	k: 7848	n:10000
Cons ci ratio: 1.418936e-02	ci left: 8.777662e-01	ci right 8.904090e-01	k: 8842	n:10000
KS ci ratio: 1.265846e-01	ci left: 8.193541e-02	ci right 9.310624e-02	k: 874	n:10000
FOXN1   10000 perm   2 sec   (6108 perm/sec)   p_kst 8.740000e-02   p_cons 8.842000e-01   p_joint 7.848000e-01

Joint ci ratio: 2.868109e-02	ci left: 4.759524e-01	ci right 4.898525e-01	k: 9658	n:20000
Cons ci ratio: 1.024411e-02	ci left: 8.752636e-01	ci right 8.843256e-01	k: 17597	n:20000
KS ci ratio: 8.965107e-02	ci left: 8.332519e-02	ci right 9.119529e-02	k: 1744	n:20000
FOXN1   20000 perm   4 sec   (5350 perm/sec)   p_kst 8.720000e-02   p_cons 8.798500e-01   p_joint 4.829000e-01

Outputting figure to mutsig2_images.part000000000066/FOXN1.2_1979_20000_0.0872_0.87985_0.4829.png
                gene_name: FOXN1
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.087 
        ci_ks_bounds_left: 0.083 
       ci_ks_bounds_right: 0.091 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.49 

Current progress: 90 percent done.
FOXN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.981304e-02	ci left: 2.312609e-01	ci right 2.480910e-01	k: 2396	n:10000
Cons ci ratio: 8.043957e-02	ci left: 1.841239e-01	ci right 1.996560e-01	k: 1918	n:10000
KS ci ratio: 5.276977e-02	ci left: 3.461116e-01	ci right 3.649727e-01	k: 3555	n:10000
FOXN3   10000 perm   2 sec   (6206 perm/sec)   p_kst 3.555000e-01   p_cons 1.918000e-01   p_joint 2.396000e-01

Outputting figure to mutsig2_images.part000000000066/FOXN3.2_1497_10000_0.3555_0.1918_0.2396.png
                gene_name: FOXN3
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 93 percent done.
FOXN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.897433e-02	ci left: 3.808216e-01	ci right 4.000423e-01	k: 3904	n:10000
KS ci ratio: 2.433543e-02	ci left: 7.129034e-01	ci right 7.305672e-01	k: 7218	n:10000
FOXN4   10000 perm   2 sec   (6389 perm/sec)   p_kst 7.218000e-01   p_cons 3.904000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000066/FOXN4.2_1590_10000_0.7218_0.3904_1.png
                gene_name: FOXN4
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
FOXRED2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.548209e-02	ci left: 8.582481e-01	ci right 8.717385e-01	k: 8651	n:10000
Cons ci ratio: 2.244374e-01	ci left: 2.627129e-02	ci right 3.300643e-02	k: 295	n:10000
KS ci ratio: 2.638395e-02	ci left: 6.790170e-01	ci right 6.972732e-01	k: 6882	n:10000
FOXRED2   10000 perm   2 sec   (5797 perm/sec)   p_kst 6.882000e-01   p_cons 2.950000e-02   p_joint 8.651000e-01

Joint ci ratio: 4.837076e-02	ci left: 2.411839e-01	ci right 2.531897e-01	k: 4943	n:20000
Cons ci ratio: 1.570719e-01	ci left: 2.782361e-02	ci right 3.261426e-02	k: 603	n:20000
KS ci ratio: 1.868728e-02	ci left: 6.810243e-01	ci right 6.939212e-01	k: 13750	n:20000
FOXRED2   20000 perm   4 sec   (5079 perm/sec)   p_kst 6.875000e-01   p_cons 3.015000e-02   p_joint 2.471500e-01

Joint ci ratio: 3.786976e-02	ci left: 2.581570e-01	ci right 2.681555e-01	k: 7894	n:30000
Cons ci ratio: 1.276696e-01	ci left: 2.851845e-02	ci right 3.243985e-02	k: 913	n:30000
KS ci ratio: 1.525589e-02	ci left: 6.822873e-01	ci right 6.928097e-01	k: 20627	n:30000
FOXRED2   30000 perm   6 sec   (4832 perm/sec)   p_kst 6.875667e-01   p_cons 3.043333e-02   p_joint 2.631333e-01

Joint ci ratio: 3.110370e-02	ci left: 2.797833e-01	ci right 2.886481e-01	k: 11368	n:40000
Cons ci ratio: 1.110679e-01	ci left: 2.852023e-02	ci right 3.189842e-02	k: 1207	n:40000
KS ci ratio: 1.325949e-02	ci left: 6.814510e-01	ci right 6.905720e-01	k: 27441	n:40000
FOXRED2   40000 perm   9 sec   (4667 perm/sec)   p_kst 6.860250e-01   p_cons 3.017500e-02   p_joint 2.842000e-01

Joint ci ratio: 8.973804e-02	ci left: 3.510800e-02	ci right 3.842606e-02	k: 1837	n:50000
Cons ci ratio: 1.004102e-01	ci left: 2.809280e-02	ci right 3.108215e-02	k: 1478	n:50000
KS ci ratio: 1.188295e-02	ci left: 6.810884e-01	ci right 6.892501e-01	k: 34259	n:50000
FOXRED2   50000 perm   11 sec   (4539 perm/sec)   p_kst 6.851800e-01   p_cons 2.956000e-02   p_joint 3.674000e-02

Joint ci ratio: 2.527337e-02	ci left: 2.825689e-01	ci right 2.898184e-01	k: 17171	n:60000
Cons ci ratio: 9.186992e-02	ci left: 2.809540e-02	ci right 3.081704e-02	k: 1766	n:60000
KS ci ratio: 1.082492e-02	ci left: 6.823527e-01	ci right 6.897960e-01	k: 41165	n:60000
FOXRED2   60000 perm   14 sec   (4413 perm/sec)   p_kst 6.860833e-01   p_cons 2.943333e-02   p_joint 2.861833e-01

Outputting figure to mutsig2_images.part000000000066/FOXRED2.2_2087_60000_0.68608_0.029433_0.28618.png
                gene_name: FOXRED2
               theta_stop: 0.092 
                    nperm: 60000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.029 
      ci_cons_bounds_left: 0.028 
     ci_cons_bounds_right: 0.031 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 98 percent done.
FPGS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.736681e-02	ci left: 3.967519e-01	ci right 4.161027e-01	k: 4064	n:10000
Cons ci ratio: 8.918611e-02	ci left: 1.546314e-01	ci right 1.691662e-01	k: 1618	n:10000
KS ci ratio: 8.522827e-02	ci left: 1.671068e-01	ci right 1.820833e-01	k: 1745	n:10000
FPGS   10000 perm   2 sec   (5808 perm/sec)   p_kst 1.745000e-01   p_cons 1.618000e-01   p_joint 4.064000e-01

Outputting figure to mutsig2_images.part000000000066/FPGS.2_1824_10000_0.1745_0.1618_0.4064.png
                gene_name: FPGS
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000066
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 66 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1536>
Subject: Job 8004088: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1536>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000067> was used as the working directory.
Started at Sun Nov 11 15:06:02 2012
Results reported at Sun Nov 11 17:06:32 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000067.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000067.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 67  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000067.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   7924.75 sec.
    Max Memory :      4788 MB
    Max Swap   :      7275 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
67
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 67
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 67: processing genes 5972 - 6061
Calculating significance of each gene.
Using projection method.
5972	FPR2	2.538536e-01
5973	FPR3	1.592412e-01
5974	FRA10AC1	1
5975	FRAS1	9.999391e-01
5976	FREM1	9.880182e-01
5977	FREM2	4.825815e-01
5978	FRG1	2.670459e-01
5979	FRG2B	1.875217e-03
5980	FRK	4.152866e-01
5981	FRMD1	9.288223e-01
5982	FRMD3	4.735637e-01
5983	FRMD4A	7.118770e-01
5984	FRMD4B	9.701497e-01
5985	FRMD5	1
5986	FRMD6	8.091334e-01
5987	FRMD7	3.947941e-01
5988	FRMD8	2.746713e-01
5989	FRMPD1	9.863403e-01
5990	FRMPD2	3.224142e-02
5991	FRMPD4	9.661282e-01
5992	FRRS1	6.477434e-01
5993	FRS2	7.189548e-02
5994	FRS3	5.061293e-01
5995	FRY	8.640962e-01
5996	FRYL	9.922463e-01
5997	FRZB	1.625691e-01
5998	FSCB	6.354642e-02
5999	FSCN1	1
6000/18094 6000	FSCN2	5.412757e-01
6001	FSCN3	7.677258e-01
6002	FSD1	1.201625e-01
6003	FSD2	7.305080e-01
6004	FSHB	1.004341e-01
6005	FSHR	4.751972e-03
6006	FSIP1	8.611470e-01
6007	FST	1
6008	FSTL1	4.886444e-01
6009	FSTL3	1
6010	FSTL4	9.737031e-01
6011	FSTL5	8.493733e-01
6012	FTCD	1.191336e-01
6013	FTH1	1.811989e-01
6014	FTHL17	8.093000e-04
6015	FTL	1
6016	FTMT	1.287206e-03
6017	FTO	1
6018	FTSJ1	1
6019	FTSJ2	3.519253e-01
6020	FTSJ3	4.112714e-01
6021	FTSJD1	1.863201e-01
6022	FTSJD2	7.645907e-01
6023	FUBP1	2.619916e-01
6024	FUBP3	1
6025	FUCA1	3.116272e-01
6026	FUCA2	7.195238e-01
6027	FUK	1
6028	FUNDC1	2.218971e-01
6029	FUNDC2	3.387049e-02
6030	FURIN	1
6031	FUS	8.643064e-01
6032	FUT1	1
6033	FUT10	1.652478e-01
6034	FUT11	1
6035	FUT2	7.351659e-01
6036	FUT3	1.153165e-01
6037	FUT4	1
6038	FUT5	4.806683e-02
6039	FUT6	3.509980e-01
6040	FUT7	1
6041	FUT8	1
6042	FUT9	1.275688e-02
6043	FUZ	5.143658e-01
6044	FXC1	1
6045	FXN	4.514703e-01
6046	FXR1	8.648140e-01
6047	FXR2	3.270160e-01
6048	FXYD1	6.372675e-02
6049	FXYD2	1
6050	FXYD3	3.794647e-01
6051	FXYD4	1
6052	FXYD5	3.416889e-01
6053	FXYD6	1
6054	FXYD7	1
6055	FYB	2.142006e-03
6056	FYCO1	1
6057	FYN	1.137942e-01
6058	FYTTD1	3.910552e-02
6059	FZD1	8.815949e-01
6060	FZD10	6.627633e-01
6061	FZD2	1
Done

Running MutSig 2:
Scatter job 67: processing genes 5972 - 6061
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
FSCB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.823153e-02	ci left: 3.880884e-01	ci right 4.073712e-01	k: 3977	n:10000
Cons ci ratio: 4.392105e-02	ci left: 4.335311e-01	ci right 4.531019e-01	k: 4433	n:10000
KS ci ratio: 7.660662e-02	ci left: 1.994895e-01	ci right 2.154812e-01	k: 2074	n:10000
FSCB   10000 perm   2 sec   (4150 perm/sec)   p_kst 2.074000e-01   p_cons 4.433000e-01   p_joint 3.977000e-01

Outputting figure to mutsig2_images.part000000000067/FSCB.19_2482_10000_0.2074_0.4433_0.3977.png
                gene_name: FSCB
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 2 percent done.
FREM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.691824e-02	ci left: 4.013338e-01	ci right 4.207181e-01	k: 4110	n:10000
Cons ci ratio: 8.732659e-02	ci left: 1.603269e-01	ci right 1.750672e-01	k: 1676	n:10000
KS ci ratio: 4.169550e-02	ci left: 4.592791e-01	ci right 4.789389e-01	k: 4691	n:10000
FREM2   10000 perm   4 sec   (2651 perm/sec)   p_kst 4.691000e-01   p_cons 1.676000e-01   p_joint 4.110000e-01

Outputting figure to mutsig2_images.part000000000067/FREM2.16_9606_10000_0.4691_0.1676_0.411.png
                gene_name: FREM2
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 4 percent done.
FRY
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.227189e-02	ci left: 9.050431e-01	ci right 9.163163e-01	k: 9108	n:10000
KS ci ratio: 1.306326e-02	ci left: 8.940557e-01	ci right 9.059101e-01	k: 9001	n:10000
FRY   10000 perm   4 sec   (2547 perm/sec)   p_kst 9.001000e-01   p_cons 9.108000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000067/FRY.15_9286_10000_0.9001_0.9108_1.png
                gene_name: FRY
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 5 percent done.
FSHR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.496648e-03	ci left: 9.610001e-01	ci right 9.683260e-01	k: 9648	n:10000
Cons ci ratio: 3.249207e-02	ci left: 5.829942e-01	ci right 6.023518e-01	k: 5927	n:10000
KS ci ratio: 1.242219e-02	ci left: 9.029877e-01	ci right 9.143730e-01	k: 9088	n:10000
FSHR   10000 perm   2 sec   (4623 perm/sec)   p_kst 9.088000e-01   p_cons 5.927000e-01   p_joint 9.648000e-01

Outputting figure to mutsig2_images.part000000000067/FSHR.15_2128_10000_0.9088_0.5927_0.9648.png
                gene_name: FSHR
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 7 percent done.
FREM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.198086e-02	ci left: 1.465847e-01	ci right 1.608177e-01	k: 1536	n:10000
Cons ci ratio: 1.435388e-01	ci left: 6.439839e-02	ci right 7.445420e-02	k: 693	n:10000
KS ci ratio: 3.998584e-02	ci left: 4.801563e-01	ci right 4.998496e-01	k: 4900	n:10000
FREM1   10000 perm   3 sec   (3300 perm/sec)   p_kst 4.900000e-01   p_cons 6.930000e-02   p_joint 1.536000e-01

Joint ci ratio: 5.614801e-02	ci left: 1.904190e-01	ci right 2.014696e-01	k: 3918	n:20000
Cons ci ratio: 1.021734e-01	ci left: 6.503709e-02	ci right 7.208897e-02	k: 1370	n:20000
KS ci ratio: 2.788608e-02	ci left: 4.899965e-01	ci right 5.039044e-01	k: 9939	n:20000
FREM1   20000 perm   7 sec   (3032 perm/sec)   p_kst 4.969500e-01   p_cons 6.850000e-02   p_joint 1.959000e-01

Joint ci ratio: 4.191504e-02	ci left: 2.209796e-01	ci right 2.304736e-01	k: 6771	n:30000
Cons ci ratio: 8.076819e-02	ci left: 6.985214e-02	ci right 7.576424e-02	k: 2183	n:30000
KS ci ratio: 2.277478e-02	ci left: 4.911594e-01	ci right 5.025079e-01	k: 14905	n:30000
FREM1   30000 perm   10 sec   (2941 perm/sec)   p_kst 4.968333e-01   p_cons 7.276667e-02   p_joint 2.257000e-01

Outputting figure to mutsig2_images.part000000000067/FREM1.12_6734_30000_0.49683_0.072767_0.2257.png
                gene_name: FREM1
               theta_stop: 0.081 
                    nperm: 30000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.073 
      ci_cons_bounds_left: 0.070 
     ci_cons_bounds_right: 0.076 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 9 percent done.
FRMPD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.293884e-02	ci left: 2.158598e-01	ci right 2.323013e-01	k: 2240	n:10000
Cons ci ratio: 4.715155e-02	ci left: 3.989431e-01	ci right 4.183102e-01	k: 4086	n:10000
KS ci ratio: 1.052552e-01	ci left: 1.153530e-01	ci right 1.282683e-01	k: 1217	n:10000
FRMPD2   10000 perm   2 sec   (4122 perm/sec)   p_kst 1.217000e-01   p_cons 4.086000e-01   p_joint 2.240000e-01

Joint ci ratio: 5.392387e-02	ci left: 2.033331e-01	ci right 2.146516e-01	k: 4179	n:20000
Cons ci ratio: 3.187811e-02	ci left: 4.236233e-01	ci right 4.373969e-01	k: 8610	n:20000
KS ci ratio: 7.430647e-02	ci left: 1.175927e-01	ci right 1.267175e-01	k: 2442	n:20000
FRMPD2   20000 perm   5 sec   (3807 perm/sec)   p_kst 1.221000e-01   p_cons 4.305000e-01   p_joint 2.089500e-01

Outputting figure to mutsig2_images.part000000000067/FRMPD2.12_4046_20000_0.1221_0.4305_0.20895.png
                gene_name: FRMPD2
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 11 percent done.
FRAS1
Processing conservation and coverage...
80% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.808135e-02	ci left: 5.045512e-01	ci right 5.242404e-01	k: 5144	n:10000
Cons ci ratio: 5.345604e-02	ci left: 3.402490e-01	ci right 3.590387e-01	k: 3496	n:10000
KS ci ratio: 4.395665e-02	ci left: 4.331321e-01	ci right 4.527012e-01	k: 4429	n:10000
FRAS1   10000 perm   4 sec   (2466 perm/sec)   p_kst 4.429000e-01   p_cons 3.496000e-01   p_joint 5.144000e-01

Outputting figure to mutsig2_images.part000000000067/FRAS1.11_12410_10000_0.4429_0.3496_0.5144.png
                gene_name: FRAS1
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 12 percent done.
FYB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.645486e-01	ci left: 4.926618e-02	ci right 5.819605e-02	k: 536	n:10000
Cons ci ratio: 2.505034e-01	ci left: 2.090184e-02	ci right 2.697984e-02	k: 238	n:10000
KS ci ratio: 6.538379e-02	ci left: 2.556770e-01	ci right 2.730605e-01	k: 2643	n:10000
FYB   10000 perm   2 sec   (4821 perm/sec)   p_kst 2.643000e-01   p_cons 2.380000e-02   p_joint 5.360000e-02

Joint ci ratio: 1.262282e-01	ci left: 4.308943e-02	ci right 4.894347e-02	k: 919	n:20000
Cons ci ratio: 1.693159e-01	ci left: 2.388659e-02	ci right 2.835263e-02	k: 521	n:20000
KS ci ratio: 4.510220e-02	ci left: 2.679262e-01	ci right 2.803395e-01	k: 5482	n:20000
FYB   20000 perm   5 sec   (4322 perm/sec)   p_kst 2.741000e-01   p_cons 2.605000e-02   p_joint 4.595000e-02

Joint ci ratio: 1.217500e-01	ci left: 3.136305e-02	ci right 3.546129e-02	k: 1001	n:30000
Cons ci ratio: 1.446328e-01	ci left: 2.216905e-02	ci right 2.565733e-02	k: 716	n:30000
KS ci ratio: 3.747348e-02	ci left: 2.622320e-01	ci right 2.722798e-01	k: 8017	n:30000
FYB   30000 perm   7 sec   (4130 perm/sec)   p_kst 2.672333e-01   p_cons 2.386667e-02   p_joint 3.336667e-02

Joint ci ratio: 9.410529e-02	ci left: 3.961521e-02	ci right 4.355170e-02	k: 1662	n:40000
Cons ci ratio: 1.278845e-01	ci left: 2.148053e-02	ci right 2.443929e-02	k: 917	n:40000
KS ci ratio: 3.251251e-02	ci left: 2.621967e-01	ci right 2.708873e-01	k: 10661	n:40000
FYB   40000 perm   10 sec   (4004 perm/sec)   p_kst 2.665250e-01   p_cons 2.292500e-02   p_joint 4.155000e-02

Joint ci ratio: 8.397577e-02	ci left: 4.000365e-02	ci right 4.352980e-02	k: 2087	n:50000
Cons ci ratio: 1.121290e-01	ci left: 2.252056e-02	ci right 2.521511e-02	k: 1192	n:50000
KS ci ratio: 2.907340e-02	ci left: 2.627477e-01	ci right 2.705194e-01	k: 13331	n:50000
FYB   50000 perm   13 sec   (3900 perm/sec)   p_kst 2.666200e-01   p_cons 2.384000e-02   p_joint 4.174000e-02

Joint ci ratio: 6.913997e-02	ci left: 4.908917e-02	ci right 5.262110e-02	k: 3050	n:60000
Cons ci ratio: 1.028611e-01	ci left: 2.241637e-02	ci right 2.486334e-02	k: 1417	n:60000
KS ci ratio: 2.659853e-02	ci left: 2.622351e-01	ci right 2.693209e-01	k: 15946	n:60000
FYB   60000 perm   16 sec   (3812 perm/sec)   p_kst 2.657667e-01   p_cons 2.361667e-02   p_joint 5.083333e-02

Joint ci ratio: 6.468901e-02	ci left: 4.822821e-02	ci right 5.146638e-02	k: 3488	n:70000
Cons ci ratio: 9.544784e-02	ci left: 2.240440e-02	ci right 2.466391e-02	k: 1646	n:70000
KS ci ratio: 2.466865e-02	ci left: 2.618186e-01	ci right 2.683723e-01	k: 18556	n:70000
FYB   70000 perm   19 sec   (3741 perm/sec)   p_kst 2.650857e-01   p_cons 2.351429e-02   p_joint 4.982857e-02

Outputting figure to mutsig2_images.part000000000067/FYB.11_2562_70000_0.26509_0.023514_0.049829.png
                gene_name: FYB
               theta_stop: 0.095 
                    nperm: 70000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.024 
      ci_cons_bounds_left: 0.022 
     ci_cons_bounds_right: 0.025 
                  p_joint: 0.050 
     ci_joint_bounds_left: 0.048 
    ci_joint_bounds_right: 0.051 

Current progress: 14 percent done.
FRYL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.599437e-02	ci left: 2.521161e-01	ci right 2.694235e-01	k: 2607	n:10000
Cons ci ratio: 5.994992e-02	ci left: 2.904329e-01	ci right 3.084840e-01	k: 2994	n:10000
KS ci ratio: 8.394965e-02	ci left: 1.714324e-01	ci right 1.865551e-01	k: 1789	n:10000
FRYL   10000 perm   4 sec   (2683 perm/sec)   p_kst 1.789000e-01   p_cons 2.994000e-01   p_joint 2.607000e-01

Outputting figure to mutsig2_images.part000000000067/FRYL.10_9286_10000_0.1789_0.2994_0.2607.png
                gene_name: FRYL
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 16 percent done.
FSTL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.685487e-02	ci left: 8.367382e-01	ci right 8.510609e-01	k: 8440	n:10000
Cons ci ratio: 1.538251e-02	ci left: 8.597792e-01	ci right 8.732065e-01	k: 8666	n:10000
KS ci ratio: 2.708704e-02	ci left: 6.675328e-01	ci right 6.859641e-01	k: 6768	n:10000
FSTL5   10000 perm   2 sec   (4809 perm/sec)   p_kst 6.768000e-01   p_cons 8.666000e-01   p_joint 8.440000e-01

Outputting figure to mutsig2_images.part000000000067/FSTL5.10_2604_10000_0.6768_0.8666_0.844.png
                gene_name: FSTL5
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 18 percent done.
FRMPD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.194188e-03	ci left: 9.638355e-01	ci right 9.708888e-01	k: 9675	n:10000
Cons ci ratio: 4.467632e-02	ci left: 4.251537e-01	ci right 4.446842e-01	k: 4349	n:10000
KS ci ratio: 1.991251e-02	ci left: 7.868508e-01	ci right 8.027771e-01	k: 7949	n:10000
FRMPD1   10000 perm   2 sec   (4338 perm/sec)   p_kst 7.949000e-01   p_cons 4.349000e-01   p_joint 9.675000e-01

Outputting figure to mutsig2_images.part000000000067/FRMPD1.8_4797_10000_0.7949_0.4349_0.9675.png
                gene_name: FRMPD1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 19 percent done.
FTMT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.169492e-02	ci left: 2.786422e-01	ci right 2.964817e-01	k: 2875	n:10000
Cons ci ratio: 8.783046e-02	ci left: 1.587554e-01	ci right 1.734397e-01	k: 1660	n:10000
KS ci ratio: 6.592598e-02	ci left: 2.525117e-01	ci right 2.698276e-01	k: 2611	n:10000
FTMT   10000 perm   2 sec   (6114 perm/sec)   p_kst 2.611000e-01   p_cons 1.660000e-01   p_joint 2.875000e-01

Outputting figure to mutsig2_images.part000000000067/FTMT.7_733_10000_0.2611_0.166_0.2875.png
                gene_name: FTMT
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 21 percent done.
FRG2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.160103e-01	ci left: 6.974044e-03	ci right 1.072050e-02	k: 87	n:10000
Cons ci ratio: 1.079305e-02	ci left: 9.244098e-01	ci right 9.345383e-01	k: 9296	n:10000
KS ci ratio: 9.230750e-01	ci left: 9.906147e-04	ci right 2.720474e-03	k: 17	n:10000
FRG2B   10000 perm   2 sec   (6624 perm/sec)   p_kst 1.700000e-03   p_cons 9.296000e-01   p_joint 8.700000e-03

Joint ci ratio: 2.520380e-01	ci left: 1.044346e-02	ci right 1.350089e-02	k: 238	n:20000
Cons ci ratio: 7.533346e-03	ci left: 9.276552e-01	ci right 9.347189e-01	k: 18625	n:20000
KS ci ratio: 6.191709e-01	ci left: 1.386997e-03	ci right 2.664760e-03	k: 39	n:20000
FRG2B   20000 perm   3 sec   (5781 perm/sec)   p_kst 1.950000e-03   p_cons 9.312500e-01   p_joint 1.190000e-02

Joint ci ratio: 1.954299e-01	ci left: 1.193916e-02	ci right 1.455637e-02	k: 396	n:30000
Cons ci ratio: 6.023836e-03	ci left: 9.309956e-01	ci right 9.366534e-01	k: 28016	n:30000
KS ci ratio: 4.973175e-01	ci left: 1.555685e-03	ci right 2.611146e-03	k: 61	n:30000
FRG2B   30000 perm   5 sec   (5469 perm/sec)   p_kst 2.033333e-03   p_cons 9.338667e-01   p_joint 1.320000e-02

Joint ci ratio: 1.831296e-01	ci left: 1.028726e-02	ci right 1.238458e-02	k: 452	n:40000
Cons ci ratio: 5.185528e-03	ci left: 9.321330e-01	ci right 9.370037e-01	k: 37384	n:40000
KS ci ratio: 4.150515e-01	ci left: 1.764827e-03	ci right 2.709769e-03	k: 88	n:40000
FRG2B   40000 perm   8 sec   (5263 perm/sec)   p_kst 2.200000e-03   p_cons 9.346000e-01   p_joint 1.130000e-02

Joint ci ratio: 1.904695e-01	ci left: 7.599625e-03	ci right 9.218228e-03	k: 419	n:50000
Cons ci ratio: 4.630357e-03	ci left: 9.326007e-01	ci right 9.369487e-01	k: 46740	n:50000
KS ci ratio: 3.767908e-01	ci left: 1.754103e-03	ci right 2.585394e-03	k: 107	n:50000
FRG2B   50000 perm   10 sec   (5095 perm/sec)   p_kst 2.140000e-03   p_cons 9.348000e-01   p_joint 8.380000e-03

Joint ci ratio: 1.695188e-01	ci left: 8.084167e-03	ci right 9.597249e-03	k: 529	n:60000
Cons ci ratio: 4.204840e-03	ci left: 9.334374e-01	ci right 9.373870e-01	k: 56126	n:60000
KS ci ratio: 3.530891e-01	ci left: 1.688838e-03	ci right 2.427324e-03	k: 122	n:60000
FRG2B   60000 perm   12 sec   (4961 perm/sec)   p_kst 2.033333e-03   p_cons 9.354333e-01   p_joint 8.816667e-03

Joint ci ratio: 1.484935e-01	ci left: 9.124760e-03	ci right 1.060201e-02	k: 689	n:70000
Cons ci ratio: 3.894407e-03	ci left: 9.335393e-01	ci right 9.371960e-01	k: 65477	n:70000
KS ci ratio: 3.286229e-01	ci left: 1.695799e-03	ci right 2.375113e-03	k: 141	n:70000
FRG2B   70000 perm   14 sec   (4834 perm/sec)   p_kst 2.014286e-03   p_cons 9.353857e-01   p_joint 9.842857e-03

Joint ci ratio: 1.311126e-01	ci left: 1.032504e-02	ci right 1.178574e-02	k: 883	n:80000
Cons ci ratio: 3.642793e-03	ci left: 9.336618e-01	ci right 9.370815e-01	k: 74831	n:80000
KS ci ratio: 3.086263e-01	ci left: 1.702349e-03	ci right 2.334638e-03	k: 160	n:80000
FRG2B   80000 perm   17 sec   (4729 perm/sec)   p_kst 2.000000e-03   p_cons 9.353875e-01   p_joint 1.103750e-02

Joint ci ratio: 1.202075e-01	ci left: 1.097535e-02	ci right 1.238972e-02	k: 1050	n:90000
Cons ci ratio: 3.452978e-03	ci left: 9.331000e-01	ci right 9.363385e-01	k: 84126	n:90000
KS ci ratio: 2.894784e-01	ci left: 1.739327e-03	ci right 2.337941e-03	k: 182	n:90000
FRG2B   90000 perm   19 sec   (4627 perm/sec)   p_kst 2.022222e-03   p_cons 9.347333e-01   p_joint 1.166667e-02

Joint ci ratio: 1.242206e-01	ci left: 9.247157e-03	ci right 1.048152e-02	k: 985	n:100000
Cons ci ratio: 3.276388e-03	ci left: 9.331612e-01	ci right 9.362335e-01	k: 93471	n:100000
KS ci ratio: 2.769072e-01	ci left: 1.723324e-03	ci right 2.286188e-03	k: 199	n:100000
FRG2B   100000 perm   22 sec   (4523 perm/sec)   p_kst 1.990000e-03   p_cons 9.347100e-01   p_joint 9.850000e-03

Joint ci ratio: 1.124465e-01	ci left: 1.031245e-02	ci right 1.154990e-02	k: 1201	n:110000
Cons ci ratio: 3.123921e-03	ci left: 9.332332e-01	ci right 9.361620e-01	k: 102818	n:110000
KS ci ratio: 2.634215e-01	ci left: 1.744647e-03	ci right 2.282152e-03	k: 220	n:110000
FRG2B   110000 perm   25 sec   (4434 perm/sec)   p_kst 2.000000e-03   p_cons 9.347091e-01   p_joint 1.091818e-02

Joint ci ratio: 1.126404e-01	ci left: 9.428541e-03	ci right 1.056199e-02	k: 1198	n:120000
Cons ci ratio: 2.992157e-03	ci left: 9.332454e-01	ci right 9.360502e-01	k: 112159	n:120000
KS ci ratio: 2.527807e-01	ci left: 1.747354e-03	ci right 2.260524e-03	k: 239	n:120000
FRG2B   120000 perm   28 sec   (4358 perm/sec)   p_kst 1.991667e-03   p_cons 9.346583e-01   p_joint 9.983333e-03

Joint ci ratio: 1.148300e-01	ci left: 8.374171e-03	ci right 9.401761e-03	k: 1154	n:130000
Cons ci ratio: 2.873962e-03	ci left: 9.333357e-01	ci right 9.360295e-01	k: 121510	n:130000
KS ci ratio: 2.442801e-01	ci left: 1.735567e-03	ci right 2.225536e-03	k: 256	n:130000
FRG2B   130000 perm   30 sec   (4277 perm/sec)   p_kst 1.969231e-03   p_cons 9.346923e-01   p_joint 8.876923e-03

Joint ci ratio: 1.251668e-01	ci left: 6.521492e-03	ci right 7.399115e-03	k: 973	n:140000
Cons ci ratio: 2.768264e-03	ci left: 9.334365e-01	ci right 9.360311e-01	k: 130864	n:140000
KS ci ratio: 2.206176e-01	ci left: 2.001849e-03	ci right 2.504837e-03	k: 314	n:140000
FRG2B   140000 perm   33 sec   (4204 perm/sec)   p_kst 2.242857e-03   p_cons 9.347429e-01   p_joint 6.950000e-03

Joint ci ratio: 1.208394e-01	ci left: 6.545502e-03	ci right 7.393724e-03	k: 1044	n:150000
Cons ci ratio: 2.671382e-03	ci left: 9.336196e-01	ci right 9.361236e-01	k: 140232	n:150000
KS ci ratio: 2.139325e-01	ci left: 1.994470e-03	ci right 2.478426e-03	k: 334	n:150000
FRG2B   150000 perm   36 sec   (4132 perm/sec)   p_kst 2.226667e-03   p_cons 9.348800e-01   p_joint 6.960000e-03

Joint ci ratio: 1.192120e-01	ci left: 6.312170e-03	ci right 7.118361e-03	k: 1073	n:160000
Cons ci ratio: 2.591298e-03	ci left: 9.334343e-01	ci right 9.358624e-01	k: 149545	n:160000
KS ci ratio: 2.090038e-01	ci left: 1.964517e-03	ci right 2.428817e-03	k: 350	n:160000
FRG2B   160000 perm   39 sec   (4058 perm/sec)   p_kst 2.187500e-03   p_cons 9.346562e-01   p_joint 6.706250e-03

Joint ci ratio: 1.157612e-01	ci left: 6.311983e-03	ci right 7.093218e-03	k: 1138	n:170000
Cons ci ratio: 2.513628e-03	ci left: 9.334856e-01	ci right 9.358408e-01	k: 158894	n:170000
KS ci ratio: 2.052431e-01	ci left: 1.921457e-03	ci right 2.366383e-03	k: 363	n:170000
FRG2B   170000 perm   43 sec   (3991 perm/sec)   p_kst 2.135294e-03   p_cons 9.346706e-01   p_joint 6.694118e-03

Joint ci ratio: 1.112982e-01	ci left: 6.463343e-03	ci right 7.230447e-03	k: 1231	n:180000
Cons ci ratio: 2.446546e-03	ci left: 9.333305e-01	ci right 9.356222e-01	k: 168207	n:180000
KS ci ratio: 2.011442e-01	ci left: 1.893800e-03	ci right 2.322489e-03	k: 378	n:180000
FRG2B   180000 perm   46 sec   (3927 perm/sec)   p_kst 2.100000e-03   p_cons 9.344833e-01   p_joint 6.838889e-03

Joint ci ratio: 1.111822e-01	ci left: 6.138460e-03	ci right 6.866194e-03	k: 1234	n:190000
Cons ci ratio: 2.376253e-03	ci left: 9.336223e-01	ci right 9.358486e-01	k: 177601	n:190000
KS ci ratio: 1.967815e-01	ci left: 1.879142e-03	ci right 2.294180e-03	k: 395	n:190000
FRG2B   190000 perm   49 sec   (3866 perm/sec)   p_kst 2.078947e-03   p_cons 9.347421e-01   p_joint 6.494737e-03

Joint ci ratio: 1.050430e-01	ci left: 6.551611e-03	ci right 7.282790e-03	k: 1382	n:200000
Cons ci ratio: 2.314793e-03	ci left: 9.337193e-01	ci right 9.358881e-01	k: 186962	n:200000
KS ci ratio: 1.917625e-01	ci left: 1.885078e-03	ci right 2.289571e-03	k: 416	n:200000
FRG2B   200000 perm   53 sec   (3807 perm/sec)   p_kst 2.080000e-03   p_cons 9.348100e-01   p_joint 6.910000e-03

Joint ci ratio: 1.017783e-01	ci left: 6.657136e-03	ci right 7.375621e-03	k: 1472	n:210000
Cons ci ratio: 2.258747e-03	ci left: 9.337597e-01	ci right 9.358759e-01	k: 196313	n:210000
KS ci ratio: 1.860478e-01	ci left: 1.913271e-03	ci right 2.310197e-03	k: 442	n:210000
FRG2B   210000 perm   56 sec   (3747 perm/sec)   p_kst 2.104762e-03   p_cons 9.348238e-01   p_joint 7.009524e-03

Joint ci ratio: 9.954039e-02	ci left: 6.651416e-03	ci right 7.352577e-03	k: 1539	n:220000
Cons ci ratio: 2.206750e-03	ci left: 9.337878e-01	ci right 9.358552e-01	k: 205662	n:220000
KS ci ratio: 1.819856e-01	ci left: 1.913026e-03	ci right 2.300280e-03	k: 462	n:220000
FRG2B   220000 perm   60 sec   (3689 perm/sec)   p_kst 2.100000e-03   p_cons 9.348273e-01   p_joint 6.995455e-03

Joint ci ratio: 9.837286e-02	ci left: 6.519090e-03	ci right 7.197775e-03	k: 1576	n:230000
Cons ci ratio: 2.158186e-03	ci left: 9.338140e-01	ci right 9.358359e-01	k: 215011	n:230000
KS ci ratio: 1.789224e-01	ci left: 1.896272e-03	ci right 2.272974e-03	k: 478	n:230000
FRG2B   230000 perm   63 sec   (3630 perm/sec)   p_kst 2.078261e-03   p_cons 9.348304e-01   p_joint 6.852174e-03

Joint ci ratio: 9.617123e-02	ci left: 6.544233e-03	ci right 7.209427e-03	k: 1649	n:240000
Cons ci ratio: 2.113559e-03	ci left: 9.337882e-01	ci right 9.357680e-01	k: 224348	n:240000
KS ci ratio: 1.740811e-01	ci left: 1.924794e-03	ci right 2.295728e-03	k: 505	n:240000
FRG2B   240000 perm   67 sec   (3576 perm/sec)   p_kst 2.104167e-03   p_cons 9.347833e-01   p_joint 6.870833e-03

Joint ci ratio: 9.618455e-02	ci left: 6.282423e-03	ci right 6.921097e-03	k: 1649	n:250000
Cons ci ratio: 2.070232e-03	ci left: 9.338453e-01	ci right 9.357846e-01	k: 233705	n:250000
KS ci ratio: 1.700930e-01	ci left: 1.939669e-03	ci right 2.304028e-03	k: 529	n:250000
FRG2B   250000 perm   71 sec   (3522 perm/sec)   p_kst 2.116000e-03   p_cons 9.348200e-01   p_joint 6.596000e-03

Joint ci ratio: 9.448314e-02	ci left: 6.266055e-03	ci right 6.891174e-03	k: 1709	n:260000
Cons ci ratio: 2.032026e-03	ci left: 9.337436e-01	ci right 9.356467e-01	k: 243022	n:260000
KS ci ratio: 1.666688e-01	ci left: 1.946116e-03	ci right 2.303589e-03	k: 551	n:260000
FRG2B   260000 perm   75 sec   (3467 perm/sec)   p_kst 2.119231e-03   p_cons 9.347000e-01   p_joint 6.573077e-03

Joint ci ratio: 9.361720e-02	ci left: 6.149693e-03	ci right 6.757271e-03	k: 1741	n:270000
Cons ci ratio: 1.993071e-03	ci left: 9.338212e-01	ci right 9.356879e-01	k: 252385	n:270000
KS ci ratio: 1.623137e-01	ci left: 1.980578e-03	ci right 2.333948e-03	k: 581	n:270000
FRG2B   270000 perm   79 sec   (3416 perm/sec)   p_kst 2.151852e-03   p_cons 9.347593e-01   p_joint 6.448148e-03

Joint ci ratio: 8.920073e-02	ci left: 6.544328e-03	ci right 7.158804e-03	k: 1917	n:280000
Cons ci ratio: 1.957247e-03	ci left: 9.338325e-01	ci right 9.356656e-01	k: 261731	n:280000
KS ci ratio: 1.606686e-01	ci left: 1.950966e-03	ci right 2.295183e-03	k: 593	n:280000
FRG2B   280000 perm   83 sec   (3364 perm/sec)   p_kst 2.117857e-03   p_cons 9.347536e-01   p_joint 6.846429e-03

Joint ci ratio: 8.874674e-02	ci left: 6.386069e-03	ci right 6.982475e-03	k: 1937	n:290000
Cons ci ratio: 1.923396e-03	ci left: 9.338364e-01	ci right 9.356377e-01	k: 271075	n:290000
KS ci ratio: 1.572623e-01	ci left: 1.969782e-03	ci right 2.309256e-03	k: 619	n:290000
FRG2B   290000 perm   87 sec   (3316 perm/sec)   p_kst 2.134483e-03   p_cons 9.347414e-01   p_joint 6.679310e-03

Joint ci ratio: 8.952711e-02	ci left: 6.065607e-03	ci right 6.637325e-03	k: 1904	n:300000
Cons ci ratio: 1.889072e-03	ci left: 9.339811e-01	ci right 9.357504e-01	k: 280461	n:300000
KS ci ratio: 1.571410e-01	ci left: 1.907320e-03	ci right 2.235751e-03	k: 620	n:300000
FRG2B   300000 perm   92 sec   (3268 perm/sec)   p_kst 2.066667e-03   p_cons 9.348700e-01   p_joint 6.346667e-03

Joint ci ratio: 8.824063e-02	ci left: 6.046569e-03	ci right 6.607881e-03	k: 1960	n:310000
Cons ci ratio: 1.858977e-03	ci left: 9.339545e-01	ci right 9.356955e-01	k: 289797	n:310000
KS ci ratio: 1.549126e-01	ci left: 1.901590e-03	ci right 2.223961e-03	k: 638	n:310000
FRG2B   310000 perm   96 sec   (3221 perm/sec)   p_kst 2.058065e-03   p_cons 9.348290e-01   p_joint 6.322581e-03

Joint ci ratio: 8.820416e-02	ci left: 5.863702e-03	ci right 6.407800e-03	k: 1962	n:320000
Cons ci ratio: 1.830980e-03	ci left: 9.338825e-01	ci right 9.355971e-01	k: 299118	n:320000
KS ci ratio: 1.523125e-01	ci left: 1.908274e-03	ci right 2.225852e-03	k: 660	n:320000
FRG2B   320000 perm   101 sec   (3175 perm/sec)   p_kst 2.062500e-03   p_cons 9.347437e-01   p_joint 6.131250e-03

Joint ci ratio: 8.662834e-02	ci left: 5.899431e-03	ci right 6.436569e-03	k: 2034	n:330000
Cons ci ratio: 1.800175e-03	ci left: 9.340895e-01	ci right 9.357756e-01	k: 308529	n:330000
KS ci ratio: 1.492925e-01	ci left: 1.929180e-03	ci right 2.243303e-03	k: 687	n:330000
FRG2B   330000 perm   105 sec   (3133 perm/sec)   p_kst 2.081818e-03   p_cons 9.349364e-01   p_joint 6.163636e-03

Joint ci ratio: 8.521548e-02	ci left: 5.921623e-03	ci right 6.451552e-03	k: 2102	n:340000
Cons ci ratio: 1.774676e-03	ci left: 9.340212e-01	ci right 9.356831e-01	k: 317851	n:340000
KS ci ratio: 1.462404e-01	ci left: 1.954582e-03	ci right 2.265767e-03	k: 716	n:340000
FRG2B   340000 perm   110 sec   (3093 perm/sec)   p_kst 2.105882e-03   p_cons 9.348559e-01   p_joint 6.182353e-03

Joint ci ratio: 7.994322e-02	ci left: 6.550002e-03	ci right 7.098212e-03	k: 2387	n:350000
Cons ci ratio: 1.747890e-03	ci left: 9.341208e-01	ci right 9.357577e-01	k: 327230	n:350000
KS ci ratio: 1.426988e-01	ci left: 1.997879e-03	ci right 2.307599e-03	k: 752	n:350000
FRG2B   350000 perm   115 sec   (3052 perm/sec)   p_kst 2.148571e-03   p_cons 9.349429e-01   p_joint 6.820000e-03

Joint ci ratio: 8.085912e-02	ci left: 6.223753e-03	ci right 6.750905e-03	k: 2334	n:360000
Cons ci ratio: 1.722317e-03	ci left: 9.342122e-01	ci right 9.358253e-01	k: 336608	n:360000
KS ci ratio: 1.412997e-01	ci left: 1.982568e-03	ci right 2.286646e-03	k: 767	n:360000
FRG2B   360000 perm   120 sec   (3012 perm/sec)   p_kst 2.130556e-03   p_cons 9.350222e-01   p_joint 6.483333e-03

Joint ci ratio: 7.973990e-02	ci left: 6.230340e-03	ci right 6.750407e-03	k: 2400	n:370000
Cons ci ratio: 1.697946e-03	ci left: 9.342906e-01	ci right 9.358810e-01	k: 345983	n:370000
KS ci ratio: 1.392299e-01	ci left: 1.988966e-03	ci right 2.289187e-03	k: 790	n:370000
FRG2B   370000 perm   125 sec   (2971 perm/sec)   p_kst 2.135135e-03   p_cons 9.350892e-01   p_joint 6.486486e-03

Joint ci ratio: 7.863384e-02	ci left: 6.241789e-03	ci right 6.755253e-03	k: 2468	n:380000
Cons ci ratio: 1.675160e-03	ci left: 9.343227e-01	ci right 9.358917e-01	k: 355342	n:380000
KS ci ratio: 1.375877e-01	ci left: 1.984893e-03	ci right 2.280676e-03	k: 809	n:380000
FRG2B   380000 perm   130 sec   (2933 perm/sec)   p_kst 2.128947e-03   p_cons 9.351105e-01   p_joint 6.494737e-03

Joint ci ratio: 7.553167e-02	ci left: 6.599815e-03	ci right 7.120373e-03	k: 2674	n:390000
Cons ci ratio: 1.652220e-03	ci left: 9.344306e-01	ci right 9.359783e-01	k: 364731	n:390000
KS ci ratio: 1.356747e-01	ci left: 1.990957e-03	ci right 2.283185e-03	k: 832	n:390000
FRG2B   390000 perm   135 sec   (2895 perm/sec)   p_kst 2.133333e-03   p_cons 9.352077e-01   p_joint 6.856410e-03

Joint ci ratio: 7.496200e-02	ci left: 6.535383e-03	ci right 7.046801e-03	k: 2715	n:400000
Cons ci ratio: 1.631236e-03	ci left: 9.344553e-01	ci right 9.359834e-01	k: 374089	n:400000
KS ci ratio: 1.335270e-01	ci left: 2.006412e-03	ci right 2.295876e-03	k: 859	n:400000
FRG2B   400000 perm   140 sec   (2859 perm/sec)   p_kst 2.147500e-03   p_cons 9.352225e-01   p_joint 6.787500e-03

Joint ci ratio: 7.476071e-02	ci left: 6.411868e-03	ci right 6.912215e-03	k: 2730	n:410000
Cons ci ratio: 1.611065e-03	ci left: 9.344765e-01	ci right 9.359856e-01	k: 383446	n:410000
KS ci ratio: 1.317015e-01	ci left: 2.014070e-03	ci right 2.300356e-03	k: 883	n:410000
FRG2B   410000 perm   145 sec   (2822 perm/sec)   p_kst 2.153659e-03   p_cons 9.352341e-01   p_joint 6.658537e-03

Joint ci ratio: 7.301122e-02	ci left: 6.567703e-03	ci right 7.067709e-03	k: 2862	n:420000
Cons ci ratio: 1.592969e-03	ci left: 9.343939e-01	ci right 9.358858e-01	k: 392760	n:420000
KS ci ratio: 1.291672e-01	ci left: 2.046732e-03	ci right 2.331634e-03	k: 918	n:420000
FRG2B   420000 perm   151 sec   (2787 perm/sec)   p_kst 2.185714e-03   p_cons 9.351429e-01   p_joint 6.814286e-03

Joint ci ratio: 7.109254e-02	ci left: 6.771246e-03	ci right 7.272641e-03	k: 3018	n:430000
Cons ci ratio: 1.572930e-03	ci left: 9.345115e-01	ci right 9.359849e-01	k: 402158	n:430000
KS ci ratio: 1.279211e-01	ci left: 2.039648e-03	ci right 2.320616e-03	k: 936	n:430000
FRG2B   430000 perm   156 sec   (2754 perm/sec)   p_kst 2.176744e-03   p_cons 9.352512e-01   p_joint 7.018605e-03

Joint ci ratio: 7.161359e-02	ci left: 6.521340e-03	ci right 7.007916e-03	k: 2975	n:440000
Cons ci ratio: 1.555639e-03	ci left: 9.344663e-01	ci right 9.359234e-01	k: 411487	n:440000
KS ci ratio: 1.267769e-01	ci left: 2.030697e-03	ci right 2.307742e-03	k: 953	n:440000
FRG2B   440000 perm   162 sec   (2722 perm/sec)   p_kst 2.165909e-03   p_cons 9.351977e-01   p_joint 6.761364e-03

Joint ci ratio: 7.023074e-02	ci left: 6.634007e-03	ci right 7.119042e-03	k: 3093	n:450000
Cons ci ratio: 1.538481e-03	ci left: 9.344567e-01	ci right 9.358977e-01	k: 420831	n:450000
KS ci ratio: 1.254043e-01	ci left: 2.030765e-03	ci right 2.304597e-03	k: 974	n:450000
FRG2B   450000 perm   167 sec   (2690 perm/sec)   p_kst 2.164444e-03   p_cons 9.351800e-01   p_joint 6.873333e-03

Joint ci ratio: 6.935017e-02	ci left: 6.658534e-03	ci right 7.139013e-03	k: 3172	n:460000
Cons ci ratio: 1.521224e-03	ci left: 9.345001e-01	ci right 9.359249e-01	k: 430199	n:460000
KS ci ratio: 1.239506e-01	ci left: 2.035059e-03	ci right 2.306055e-03	k: 997	n:460000
FRG2B   460000 perm   173 sec   (2658 perm/sec)   p_kst 2.167391e-03   p_cons 9.352152e-01   p_joint 6.895652e-03

Joint ci ratio: 6.984452e-02	ci left: 6.424848e-03	ci right 6.891903e-03	k: 3128	n:470000
Cons ci ratio: 1.504720e-03	ci left: 9.345267e-01	ci right 9.359360e-01	k: 439560	n:470000
KS ci ratio: 1.229088e-01	ci left: 2.026813e-03	ci right 2.294277e-03	k: 1014	n:470000
FRG2B   470000 perm   179 sec   (2628 perm/sec)   p_kst 2.157447e-03   p_cons 9.352340e-01   p_joint 6.655319e-03

Joint ci ratio: 6.921761e-02	ci left: 6.407681e-03	ci right 6.869138e-03	k: 3185	n:480000
Cons ci ratio: 1.489458e-03	ci left: 9.344936e-01	ci right 9.358886e-01	k: 448893	n:480000
KS ci ratio: 1.218338e-01	ci left: 2.020939e-03	ci right 2.285128e-03	k: 1032	n:480000
FRG2B   480000 perm   185 sec   (2600 perm/sec)   p_kst 2.150000e-03   p_cons 9.351938e-01   p_joint 6.635417e-03

Joint ci ratio: 6.688487e-02	ci left: 6.728320e-03	ci right 7.195906e-03	k: 3410	n:490000
Cons ci ratio: 1.474080e-03	ci left: 9.345092e-01	ci right 9.358897e-01	k: 458249	n:490000
KS ci ratio: 1.208440e-01	ci left: 2.013336e-03	ci right 2.274240e-03	k: 1049	n:490000
FRG2B   490000 perm   190 sec   (2573 perm/sec)   p_kst 2.140816e-03   p_cons 9.352020e-01   p_joint 6.959184e-03

Joint ci ratio: 6.526218e-02	ci left: 6.930127e-03	ci right 7.399611e-03	k: 3581	n:500000
Cons ci ratio: 1.459024e-03	ci left: 9.345362e-01	ci right 9.359027e-01	k: 467611	n:500000
KS ci ratio: 1.196535e-01	ci left: 2.013806e-03	ci right 2.272018e-03	k: 1070	n:500000
FRG2B   500000 perm   196 sec   (2545 perm/sec)   p_kst 2.140000e-03   p_cons 9.352220e-01   p_joint 7.162000e-03

Joint ci ratio: 6.397543e-02	ci left: 7.073978e-03	ci right 7.543410e-03	k: 3726	n:510000
Cons ci ratio: 1.445262e-03	ci left: 9.344914e-01	ci right 9.358449e-01	k: 476937	n:510000
KS ci ratio: 1.180648e-01	ci left: 2.029492e-03	ci right 2.286020e-03	k: 1099	n:510000
FRG2B   510000 perm   203 sec   (2518 perm/sec)   p_kst 2.154902e-03   p_cons 9.351706e-01   p_joint 7.305882e-03

Joint ci ratio: 6.391953e-02	ci left: 6.951172e-03	ci right 7.412036e-03	k: 3733	n:520000
Cons ci ratio: 1.432175e-03	ci left: 9.344232e-01	ci right 9.357643e-01	k: 486250	n:520000
KS ci ratio: 1.169538e-01	ci left: 2.029661e-03	ci right 2.283629e-03	k: 1120	n:520000
FRG2B   520000 perm   209 sec   (2491 perm/sec)   p_kst 2.153846e-03   p_cons 9.350962e-01   p_joint 7.178846e-03

Joint ci ratio: 6.336236e-02	ci left: 6.942564e-03	ci right 7.398697e-03	k: 3799	n:530000
Cons ci ratio: 1.419172e-03	ci left: 9.343804e-01	ci right 9.357092e-01	k: 495575	n:530000
KS ci ratio: 1.159753e-01	ci left: 2.026170e-03	ci right 2.277435e-03	k: 1139	n:530000
FRG2B   530000 perm   215 sec   (2465 perm/sec)   p_kst 2.149057e-03   p_cons 9.350472e-01   p_joint 7.167925e-03

Joint ci ratio: 6.496090e-02	ci left: 6.480495e-03	ci right 6.917415e-03	k: 3616	n:540000
Cons ci ratio: 1.406216e-03	ci left: 9.343653e-01	ci right 9.356819e-01	k: 504914	n:540000
KS ci ratio: 1.151206e-01	ci left: 2.019220e-03	ci right 2.267651e-03	k: 1156	n:540000
FRG2B   540000 perm   221 sec   (2439 perm/sec)   p_kst 2.140741e-03   p_cons 9.350259e-01   p_joint 6.696296e-03

Joint ci ratio: 6.424470e-02	ci left: 6.507564e-03	ci right 6.941293e-03	k: 3697	n:550000
Cons ci ratio: 1.393253e-03	ci left: 9.343818e-01	ci right 9.356863e-01	k: 514270	n:550000
KS ci ratio: 1.137037e-01	ci left: 2.033726e-03	ci right 2.280656e-03	k: 1185	n:550000
FRG2B   550000 perm   228 sec   (2415 perm/sec)   p_kst 2.154545e-03   p_cons 9.350364e-01   p_joint 6.721818e-03

Joint ci ratio: 6.367903e-02	ci left: 6.507330e-03	ci right 6.937083e-03	k: 3763	n:560000
Cons ci ratio: 1.380298e-03	ci left: 9.344283e-01	ci right 9.357208e-01	k: 523643	n:560000
KS ci ratio: 1.128040e-01	ci left: 2.030377e-03	ci right 2.274820e-03	k: 1204	n:560000
FRG2B   560000 perm   234 sec   (2390 perm/sec)   p_kst 2.150000e-03   p_cons 9.350768e-01   p_joint 6.719643e-03

Joint ci ratio: 6.312804e-02	ci left: 6.507120e-03	ci right 6.933005e-03	k: 3829	n:570000
Cons ci ratio: 1.368033e-03	ci left: 9.344433e-01	ci right 9.357242e-01	k: 532999	n:570000
KS ci ratio: 1.114246e-01	ci left: 2.045913e-03	ci right 2.289016e-03	k: 1234	n:570000
FRG2B   570000 perm   241 sec   (2366 perm/sec)   p_kst 2.164912e-03   p_cons 9.350860e-01   p_joint 6.717544e-03

Joint ci ratio: 6.246212e-02	ci left: 6.534090e-03	ci right 6.957066e-03	k: 3911	n:580000
Cons ci ratio: 1.355973e-03	ci left: 9.344682e-01	ci right 9.357378e-01	k: 542361	n:580000
KS ci ratio: 1.102257e-01	ci left: 2.055900e-03	ci right 2.297391e-03	k: 1261	n:580000
FRG2B   580000 perm   248 sec   (2342 perm/sec)   p_kst 2.174138e-03   p_cons 9.351052e-01   p_joint 6.743103e-03

Joint ci ratio: 6.191836e-02	ci left: 6.538474e-03	ci right 6.957917e-03	k: 3980	n:590000
Cons ci ratio: 1.344678e-03	ci left: 9.344514e-01	ci right 9.357104e-01	k: 551699	n:590000
KS ci ratio: 1.092773e-01	ci left: 2.057319e-03	ci right 2.296764e-03	k: 1283	n:590000
FRG2B   590000 perm   254 sec   (2320 perm/sec)   p_kst 2.174576e-03   p_cons 9.350831e-01   p_joint 6.745763e-03

Joint ci ratio: 6.083152e-02	ci left: 6.664188e-03	ci right 7.083928e-03	k: 4123	n:600000
Cons ci ratio: 1.333586e-03	ci left: 9.344419e-01	ci right 9.356905e-01	k: 561041	n:600000
KS ci ratio: 1.082700e-01	ci left: 2.061942e-03	ci right 2.299572e-03	k: 1307	n:600000
FRG2B   600000 perm   261 sec   (2298 perm/sec)   p_kst 2.178333e-03   p_cons 9.350683e-01   p_joint 6.871667e-03

Joint ci ratio: 6.449459e-02	ci left: 5.825474e-03	ci right 6.215306e-03	k: 3671	n:610000
Cons ci ratio: 1.323693e-03	ci left: 9.343472e-01	ci right 9.355864e-01	k: 570331	n:610000
KS ci ratio: 1.129549e-01	ci left: 1.859164e-03	ci right 2.083313e-03	k: 1201	n:610000
FRG2B   610000 perm   268 sec   (2276 perm/sec)   p_kst 1.968852e-03   p_cons 9.349689e-01   p_joint 6.018033e-03

Joint ci ratio: 6.342917e-02	ci left: 5.928325e-03	ci right 6.318246e-03	k: 3795	n:620000
Cons ci ratio: 1.312673e-03	ci left: 9.343803e-01	ci right 9.356092e-01	k: 579698	n:620000
KS ci ratio: 1.118435e-01	ci left: 1.866799e-03	ci right 2.089508e-03	k: 1225	n:620000
FRG2B   620000 perm   275 sec   (2256 perm/sec)   p_kst 1.975806e-03   p_cons 9.349968e-01   p_joint 6.120968e-03

Joint ci ratio: 6.712519e-02	ci left: 5.203348e-03	ci right 5.566303e-03	k: 3391	n:630000
Cons ci ratio: 1.302315e-03	ci left: 9.343757e-01	ci right 9.355949e-01	k: 589042	n:630000
KS ci ratio: 1.112558e-01	ci left: 1.857226e-03	ci right 2.077553e-03	k: 1238	n:630000
FRG2B   630000 perm   282 sec   (2236 perm/sec)   p_kst 1.965079e-03   p_cons 9.349873e-01   p_joint 5.382540e-03

Joint ci ratio: 6.647122e-02	ci left: 5.224986e-03	ci right 5.585763e-03	k: 3458	n:640000
Cons ci ratio: 1.292032e-03	ci left: 9.343870e-01	ci right 9.355966e-01	k: 598396	n:640000
KS ci ratio: 1.097588e-01	ci left: 1.879865e-03	ci right 2.099682e-03	k: 1272	n:640000
FRG2B   640000 perm   289 sec   (2216 perm/sec)   p_kst 1.987500e-03   p_cons 9.349937e-01   p_joint 5.403125e-03

Joint ci ratio: 6.597725e-02	ci left: 5.223277e-03	ci right 5.581153e-03	k: 3510	n:650000
Cons ci ratio: 1.282004e-03	ci left: 9.343964e-01	ci right 9.355966e-01	k: 607749	n:650000
KS ci ratio: 1.090334e-01	ci left: 1.876382e-03	ci right 2.094249e-03	k: 1289	n:650000
FRG2B   650000 perm   296 sec   (2195 perm/sec)   p_kst 1.983077e-03   p_cons 9.349985e-01   p_joint 5.400000e-03

Joint ci ratio: 6.555891e-02	ci left: 5.211196e-03	ci right 5.565894e-03	k: 3555	n:660000
Cons ci ratio: 1.272144e-03	ci left: 9.344117e-01	ci right 9.356027e-01	k: 617106	n:660000
KS ci ratio: 1.084470e-01	ci left: 1.868587e-03	ci right 2.084307e-03	k: 1303	n:660000
FRG2B   660000 perm   304 sec   (2174 perm/sec)   p_kst 1.974242e-03   p_cons 9.350091e-01   p_joint 5.386364e-03

Joint ci ratio: 6.517573e-02	ci left: 5.195077e-03	ci right 5.546534e-03	k: 3597	n:670000
Cons ci ratio: 1.262709e-03	ci left: 9.344071e-01	ci right 9.355892e-01	k: 626450	n:670000
KS ci ratio: 1.077471e-01	ci left: 1.865384e-03	ci right 2.079257e-03	k: 1320	n:670000
FRG2B   670000 perm   311 sec   (2155 perm/sec)   p_kst 1.970149e-03   p_cons 9.350000e-01   p_joint 5.368657e-03

Joint ci ratio: 6.469207e-02	ci left: 5.196802e-03	ci right 5.545668e-03	k: 3651	n:680000
Cons ci ratio: 1.253010e-03	ci left: 9.344484e-01	ci right 9.356214e-01	k: 635825	n:680000
KS ci ratio: 1.069406e-01	ci left: 1.866574e-03	ci right 2.078881e-03	k: 1340	n:680000
FRG2B   680000 perm   318 sec   (2135 perm/sec)   p_kst 1.970588e-03   p_cons 9.350368e-01   p_joint 5.369118e-03

Joint ci ratio: 6.426261e-02	ci left: 5.191355e-03	ci right 5.537456e-03	k: 3700	n:690000
Cons ci ratio: 1.244096e-03	ci left: 9.344332e-01	ci right 9.355979e-01	k: 645162	n:690000
KS ci ratio: 1.061129e-01	ci left: 1.869146e-03	ci right 2.079997e-03	k: 1361	n:690000
FRG2B   690000 perm   326 sec   (2116 perm/sec)   p_kst 1.972464e-03   p_cons 9.350174e-01   p_joint 5.362319e-03

Joint ci ratio: 5.993301e-02	ci left: 5.892189e-03	ci right 6.257631e-03	k: 4251	n:700000
Cons ci ratio: 1.234671e-03	ci left: 9.344874e-01	ci right 9.356433e-01	k: 654547	n:700000
KS ci ratio: 1.052660e-01	ci left: 1.873042e-03	ci right 2.082542e-03	k: 1383	n:700000
FRG2B   700000 perm   334 sec   (2097 perm/sec)   p_kst 1.975714e-03   p_cons 9.350671e-01   p_joint 6.072857e-03

Joint ci ratio: 5.950073e-02	ci left: 5.895220e-03	ci right 6.258123e-03	k: 4313	n:710000
Cons ci ratio: 1.226112e-03	ci left: 9.344750e-01	ci right 9.356229e-01	k: 663886	n:710000
KS ci ratio: 1.047005e-01	ci left: 1.867233e-03	ci right 2.074892e-03	k: 1398	n:710000
FRG2B   710000 perm   342 sec   (2078 perm/sec)   p_kst 1.969014e-03   p_cons 9.350507e-01   p_joint 6.074648e-03

Joint ci ratio: 5.950325e-02	ci left: 5.813335e-03	ci right 6.171213e-03	k: 4313	n:720000
Cons ci ratio: 1.216989e-03	ci left: 9.345369e-01	ci right 9.356763e-01	k: 673278	n:720000
KS ci ratio: 1.039967e-01	ci left: 1.867000e-03	ci right 2.073151e-03	k: 1417	n:720000
FRG2B   720000 perm   349 sec   (2061 perm/sec)   p_kst 1.968056e-03   p_cons 9.351083e-01   p_joint 5.990278e-03

Joint ci ratio: 6.092103e-02	ci left: 5.467870e-03	ci right 5.812783e-03	k: 4116	n:730000
Cons ci ratio: 1.207835e-03	ci left: 9.346205e-01	ci right 9.357514e-01	k: 682687	n:730000
KS ci ratio: 1.034152e-01	ci left: 1.862773e-03	ci right 2.067238e-03	k: 1433	n:730000
FRG2B   730000 perm   357 sec   (2043 perm/sec)   p_kst 1.963014e-03   p_cons 9.351877e-01   p_joint 5.638356e-03

Joint ci ratio: 5.872586e-02	ci left: 5.809326e-03	ci right 6.162126e-03	k: 4428	n:740000
Cons ci ratio: 1.199738e-03	ci left: 9.346150e-01	ci right 9.357383e-01	k: 692032	n:740000
KS ci ratio: 1.027368e-01	ci left: 1.862614e-03	ci right 2.065640e-03	k: 1452	n:740000
FRG2B   740000 perm   365 sec   (2026 perm/sec)   p_kst 1.962162e-03   p_cons 9.351784e-01   p_joint 5.983784e-03

Joint ci ratio: 5.837788e-02	ci left: 5.801500e-03	ci right 6.151666e-03	k: 4481	n:750000
Cons ci ratio: 1.191395e-03	ci left: 9.346512e-01	ci right 9.357667e-01	k: 701408	n:750000
KS ci ratio: 1.021761e-01	ci left: 1.858566e-03	ci right 2.059978e-03	k: 1468	n:750000
FRG2B   750000 perm   373 sec   (2009 perm/sec)   p_kst 1.957333e-03   p_cons 9.352107e-01   p_joint 5.974667e-03

Joint ci ratio: 5.810048e-02	ci left: 5.780917e-03	ci right 6.128128e-03	k: 4524	n:760000
Cons ci ratio: 1.183661e-03	ci left: 9.346416e-01	ci right 9.357498e-01	k: 710750	n:760000
KS ci ratio: 1.016244e-01	ci left: 1.854627e-03	ci right 2.054463e-03	k: 1484	n:760000
FRG2B   760000 perm   381 sec   (1993 perm/sec)   p_kst 1.952632e-03   p_cons 9.351974e-01   p_joint 5.952632e-03

Joint ci ratio: 5.776343e-02	ci left: 5.773674e-03	ci right 6.118371e-03	k: 4577	n:770000
Cons ci ratio: 1.175836e-03	ci left: 9.346570e-01	ci right 9.357579e-01	k: 720111	n:770000
KS ci ratio: 1.010815e-01	ci left: 1.850793e-03	ci right 2.049087e-03	k: 1500	n:770000
FRG2B   770000 perm   389 sec   (1977 perm/sec)   p_kst 1.948052e-03   p_cons 9.352091e-01   p_joint 5.944156e-03

Joint ci ratio: 5.742595e-02	ci left: 5.767886e-03	ci right 6.110158e-03	k: 4631	n:780000
Cons ci ratio: 1.168534e-03	ci left: 9.346334e-01	ci right 9.357275e-01	k: 729442	n:780000
KS ci ratio: 1.005141e-01	ci left: 1.848311e-03	ci right 2.045161e-03	k: 1517	n:780000
FRG2B   780000 perm   398 sec   (1961 perm/sec)   p_kst 1.944872e-03   p_cons 9.351821e-01   p_joint 5.937179e-03

Joint ci ratio: 5.879047e-02	ci left: 5.431638e-03	ci right 5.761876e-03	k: 4420	n:790000
Cons ci ratio: 1.161282e-03	ci left: 9.346193e-01	ci right 9.357066e-01	k: 738780	n:790000
KS ci ratio: 1.001524e-01	ci left: 1.838488e-03	ci right 2.033547e-03	k: 1528	n:790000
FRG2B   790000 perm   406 sec   (1946 perm/sec)   p_kst 1.934177e-03   p_cons 9.351646e-01   p_joint 5.594937e-03

Joint ci ratio: 5.895366e-02	ci left: 5.334177e-03	ci right 5.659420e-03	k: 4396	n:800000
Cons ci ratio: 1.154295e-03	ci left: 9.345919e-01	ci right 9.356725e-01	k: 748107	n:800000
KS ci ratio: 9.956812e-02	ci left: 1.837445e-03	ci right 2.031189e-03	k: 1546	n:800000
FRG2B   800000 perm   415 sec   (1929 perm/sec)   p_kst 1.932500e-03   p_cons 9.351337e-01   p_joint 5.495000e-03

Outputting figure to mutsig2_images.part000000000067/FRG2B.5_852_800000_0.0019325_0.93513_0.005495.png
                gene_name: FRG2B
               theta_stop: 0.100 
                    nperm: 800000 
                     p_ks: 0.0019 
        ci_ks_bounds_left: 0.0018 
       ci_ks_bounds_right: 0.0020 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.0055 
     ci_joint_bounds_left: 0.0053 
    ci_joint_bounds_right: 0.0057 

Current progress: 23 percent done.
FTHL17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.918818e-03	ci left: 9.880698e-01	ci right 9.920369e-01	k: 9902	n:10000
KS ci ratio: 1.049357e-02	ci left: 9.281291e-01	ci right 9.380168e-01	k: 9332	n:10000
FTHL17   10000 perm   2 sec   (6179 perm/sec)   p_kst 9.332000e-01   p_cons 9.902000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000067/FTHL17.5_556_10000_0.9332_0.9902_1.png
                gene_name: FTHL17
               theta_stop: 0.010 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 25 percent done.
FTSJD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.506925e-02	ci left: 4.208664e-01	ci right 4.403740e-01	k: 4306	n:10000
Cons ci ratio: 8.162590e-02	ci left: 1.796951e-01	ci right 1.950875e-01	k: 1873	n:10000
KS ci ratio: 1.801804e-02	ci left: 8.180184e-01	ci right 8.329915e-01	k: 8256	n:10000
FTSJD1   10000 perm   2 sec   (4899 perm/sec)   p_kst 8.256000e-01   p_cons 1.873000e-01   p_joint 4.306000e-01

Outputting figure to mutsig2_images.part000000000067/FTSJD1.5_2317_10000_0.8256_0.1873_0.4306.png
                gene_name: FTSJD1
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 26 percent done.
FUT9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.462890e-02	ci left: 8.712206e-01	ci right 8.841585e-01	k: 8778	n:10000
Cons ci ratio: 1.388292e-02	ci left: 8.822699e-01	ci right 8.947028e-01	k: 8886	n:10000
KS ci ratio: 2.746542e-02	ci left: 6.613903e-01	ci right 6.799102e-01	k: 6707	n:10000
FUT9   10000 perm   2 sec   (5770 perm/sec)   p_kst 6.707000e-01   p_cons 8.886000e-01   p_joint 8.778000e-01

Outputting figure to mutsig2_images.part000000000067/FUT9.5_1084_10000_0.6707_0.8886_0.8778.png
                gene_name: FUT9
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 28 percent done.
FYN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.028594e-03	ci left: 9.452335e-01	ci right 9.539023e-01	k: 9497	n:10000
KS ci ratio: 1.437565e-02	ci left: 8.750041e-01	ci right 8.877728e-01	k: 8815	n:10000
FYN   10000 perm   2 sec   (5280 perm/sec)   p_kst 8.815000e-01   p_cons 9.497000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000067/FYN.5_1818_10000_0.8815_0.9497_1.png
                gene_name: FYN
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 30 percent done.
FPR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.287741e-01	ci left: 7.931430e-02	ci right 9.032897e-02	k: 847	n:10000
Cons ci ratio: 1.073740e-01	ci left: 1.112507e-01	ci right 1.239730e-01	k: 1175	n:10000
KS ci ratio: 9.663204e-02	ci left: 1.344301e-01	ci right 1.481796e-01	k: 1412	n:10000
FPR3   10000 perm   2 sec   (5701 perm/sec)   p_kst 1.412000e-01   p_cons 1.175000e-01   p_joint 8.470000e-02

Joint ci ratio: 8.876230e-02	ci left: 8.489271e-02	ci right 9.282730e-02	k: 1776	n:20000
Cons ci ratio: 7.403058e-02	ci left: 1.183798e-01	ci right 1.275301e-01	k: 2458	n:20000
KS ci ratio: 7.067778e-02	ci left: 1.285686e-01	ci right 1.380383e-01	k: 2665	n:20000
FPR3   20000 perm   4 sec   (5103 perm/sec)   p_kst 1.332500e-01   p_cons 1.229000e-01   p_joint 8.880000e-02

Outputting figure to mutsig2_images.part000000000067/FPR3.4_1066_20000_0.13325_0.1229_0.0888.png
                gene_name: FPR3
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.089 
     ci_joint_bounds_left: 0.085 
    ci_joint_bounds_right: 0.093 

Current progress: 32 percent done.
FRK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.007699e-02	ci left: 6.198475e-01	ci right 6.388771e-01	k: 6294	n:10000
Cons ci ratio: 7.529607e-03	ci left: 9.606854e-01	ci right 9.680409e-01	k: 9645	n:10000
KS ci ratio: 3.648198e-02	ci left: 5.259661e-01	ci right 5.456130e-01	k: 5358	n:10000
FRK   10000 perm   2 sec   (5571 perm/sec)   p_kst 5.358000e-01   p_cons 9.645000e-01   p_joint 6.294000e-01

Outputting figure to mutsig2_images.part000000000067/FRK.4_1550_10000_0.5358_0.9645_0.6294.png
                gene_name: FRK
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 33 percent done.
FRMD7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.684082e-02	ci left: 4.021307e-01	ci right 4.215207e-01	k: 4118	n:10000
Cons ci ratio: 3.570447e-02	ci left: 5.366803e-01	ci right 5.562926e-01	k: 5465	n:10000
KS ci ratio: 6.279685e-02	ci left: 2.715119e-01	ci right 2.892162e-01	k: 2803	n:10000
FRMD7   10000 perm   2 sec   (5455 perm/sec)   p_kst 2.803000e-01   p_cons 5.465000e-01   p_joint 4.118000e-01

Outputting figure to mutsig2_images.part000000000067/FRMD7.4_2193_10000_0.2803_0.5465_0.4118.png
                gene_name: FRMD7
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 35 percent done.
FRS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.961964e-02	ci left: 4.847535e-01	ci right 5.044496e-01	k: 4946	n:10000
KS ci ratio: 5.541190e-03	ci left: 9.775957e-01	ci right 9.831195e-01	k: 9805	n:10000
FRS2   10000 perm   2 sec   (5352 perm/sec)   p_kst 9.805000e-01   p_cons 4.946000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000067/FRS2.4_1547_10000_0.9805_0.4946_1.png
                gene_name: FRS2
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 37 percent done.
FSD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.084238e-02	ci left: 6.079920e-01	ci right 6.271395e-01	k: 6176	n:10000
Cons ci ratio: 7.822696e-02	ci left: 1.927894e-01	ci right 2.085854e-01	k: 2006	n:10000
KS ci ratio: 3.857208e-02	ci left: 4.981503e-01	ci right 5.178450e-01	k: 5080	n:10000
FSD1   10000 perm   2 sec   (5594 perm/sec)   p_kst 5.080000e-01   p_cons 2.006000e-01   p_joint 6.176000e-01

Outputting figure to mutsig2_images.part000000000067/FSD1.4_1543_10000_0.508_0.2006_0.6176.png
                gene_name: FSD1
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 39 percent done.
FTSJ3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.457014e-02	ci left: 2.605249e-01	ci right 2.780097e-01	k: 2692	n:10000
Cons ci ratio: 1.259546e-01	ci left: 8.271234e-02	ci right 9.392883e-02	k: 882	n:10000
KS ci ratio: 3.282282e-02	ci left: 5.780780e-01	ci right 5.974708e-01	k: 5878	n:10000
FTSJ3   10000 perm   2 sec   (5490 perm/sec)   p_kst 5.878000e-01   p_cons 8.820000e-02   p_joint 2.692000e-01

Joint ci ratio: 4.929810e-02	ci left: 2.342429e-01	ci right 2.461327e-01	k: 4803	n:20000
Cons ci ratio: 8.846213e-02	ci left: 8.543163e-02	ci right 9.338821e-02	k: 1787	n:20000
KS ci ratio: 2.259085e-02	ci left: 5.940236e-01	ci right 6.076470e-01	k: 12017	n:20000
FTSJ3   20000 perm   4 sec   (4807 perm/sec)   p_kst 6.008500e-01   p_cons 8.935000e-02   p_joint 2.401500e-01

Outputting figure to mutsig2_images.part000000000067/FTSJ3.4_2624_20000_0.60085_0.08935_0.24015.png
                gene_name: FTSJ3
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.089 
      ci_cons_bounds_left: 0.085 
     ci_cons_bounds_right: 0.093 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 40 percent done.
FUBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.739085e-02	ci left: 6.625985e-01	ci right 6.811013e-01	k: 6719	n:10000
Cons ci ratio: 8.478738e-02	ci left: 1.685812e-01	ci right 1.836080e-01	k: 1760	n:10000
KS ci ratio: 9.697687e-03	ci left: 9.376532e-01	ci right 9.468871e-01	k: 9424	n:10000
FUBP1   10000 perm   2 sec   (5572 perm/sec)   p_kst 9.424000e-01   p_cons 1.760000e-01   p_joint 6.719000e-01

Outputting figure to mutsig2_images.part000000000067/FUBP1.4_2015_10000_0.9424_0.176_0.6719.png
                gene_name: FUBP1
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 42 percent done.
FUT10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.777363e-02	ci left: 8.219835e-01	ci right 8.368241e-01	k: 8295	n:10000
Cons ci ratio: 3.021896e-02	ci left: 6.176367e-01	ci right 6.366892e-01	k: 6272	n:10000
KS ci ratio: 2.852276e-02	ci left: 6.443816e-01	ci right 6.631288e-01	k: 6538	n:10000
FUT10   10000 perm   2 sec   (6116 perm/sec)   p_kst 6.538000e-01   p_cons 6.272000e-01   p_joint 8.295000e-01

Outputting figure to mutsig2_images.part000000000067/FUT10.4_1456_10000_0.6538_0.6272_0.8295.png
                gene_name: FUT10
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 44 percent done.
FUT5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.185194e-01	ci left: 9.272705e-02	ci right 1.045080e-01	k: 985	n:10000
Cons ci ratio: 2.422036e-02	ci left: 7.148214e-01	ci right 7.324482e-01	k: 7237	n:10000
KS ci ratio: 5.132010e-01	ci left: 4.319899e-03	ci right 7.378784e-03	k: 57	n:10000
FUT5   10000 perm   2 sec   (6298 perm/sec)   p_kst 5.700000e-03   p_cons 7.237000e-01   p_joint 9.850000e-02

Joint ci ratio: 1.461933e-01	ci left: 3.215814e-02	ci right 3.727829e-02	k: 693	n:20000
Cons ci ratio: 1.704323e-02	ci left: 7.194088e-01	ci right 7.318256e-01	k: 14513	n:20000
KS ci ratio: 3.301307e-01	ci left: 5.845775e-03	ci right 8.200977e-03	k: 139	n:20000
FUT5   20000 perm   4 sec   (5593 perm/sec)   p_kst 6.950000e-03   p_cons 7.256500e-01   p_joint 3.465000e-02

Joint ci ratio: 1.427074e-01	ci left: 2.278012e-02	ci right 2.631278e-02	k: 735	n:30000
Cons ci ratio: 1.392340e-02	ci left: 7.203448e-01	ci right 7.304782e-01	k: 21763	n:30000
KS ci ratio: 2.708548e-01	ci left: 5.994619e-03	ci right 7.902745e-03	k: 207	n:30000
FUT5   30000 perm   6 sec   (5166 perm/sec)   p_kst 6.900000e-03   p_cons 7.254333e-01   p_joint 2.450000e-02

Joint ci ratio: 1.415959e-01	ci left: 1.746740e-02	ci right 2.015311e-02	k: 751	n:40000
Cons ci ratio: 1.200989e-02	ci left: 7.226304e-01	ci right 7.313866e-01	k: 29081	n:40000
KS ci ratio: 2.501826e-01	ci left: 5.337037e-03	ci right 6.885981e-03	k: 243	n:40000
FUT5   40000 perm   8 sec   (5013 perm/sec)   p_kst 6.075000e-03   p_cons 7.270250e-01   p_joint 1.877500e-02

Joint ci ratio: 1.250305e-01	ci left: 1.807330e-02	ci right 2.050296e-02	k: 963	n:50000
Cons ci ratio: 1.074591e-02	ci left: 7.229515e-01	ci right 7.307822e-01	k: 36344	n:50000
KS ci ratio: 2.184301e-01	ci left: 5.700897e-03	ci right 7.117327e-03	k: 319	n:50000
FUT5   50000 perm   10 sec   (4884 perm/sec)   p_kst 6.380000e-03   p_cons 7.268800e-01   p_joint 1.926000e-02

Joint ci ratio: 1.183700e-01	ci left: 1.688649e-02	ci right 1.902717e-02	k: 1076	n:60000
Cons ci ratio: 9.810385e-03	ci left: 7.232655e-01	ci right 7.304126e-01	k: 43611	n:60000
KS ci ratio: 1.991381e-01	ci left: 5.777565e-03	ci right 7.070874e-03	k: 384	n:60000
FUT5   60000 perm   13 sec   (4737 perm/sec)   p_kst 6.400000e-03   p_cons 7.268500e-01   p_joint 1.793333e-02

Joint ci ratio: 1.173135e-01	ci left: 1.477820e-02	ci right 1.663369e-02	k: 1098	n:70000
Cons ci ratio: 9.064853e-03	ci left: 7.243142e-01	ci right 7.309241e-01	k: 50934	n:70000
KS ci ratio: 1.831729e-01	ci left: 5.904447e-03	ci right 7.108438e-03	k: 454	n:70000
FUT5   70000 perm   15 sec   (4640 perm/sec)   p_kst 6.485714e-03   p_cons 7.276286e-01   p_joint 1.568571e-02

Joint ci ratio: 9.988738e-02	ci left: 1.794323e-02	ci right 1.984188e-02	k: 1510	n:80000
Cons ci ratio: 8.459155e-03	ci left: 7.254790e-01	ci right 7.316544e-01	k: 58286	n:80000
KS ci ratio: 1.730253e-01	ci left: 5.823239e-03	ci right 6.938014e-03	k: 509	n:80000
FUT5   80000 perm   18 sec   (4538 perm/sec)   p_kst 6.362500e-03   p_cons 7.285750e-01   p_joint 1.887500e-02

Joint ci ratio: 7.962652e-02	ci left: 2.517708e-02	ci right 2.727583e-02	k: 2359	n:90000
Cons ci ratio: 7.965010e-03	ci left: 7.261724e-01	ci right 7.319906e-01	k: 65618	n:90000
KS ci ratio: 1.612663e-01	ci left: 5.996056e-03	ci right 7.058349e-03	k: 586	n:90000
FUT5   90000 perm   20 sec   (4431 perm/sec)   p_kst 6.511111e-03   p_cons 7.290889e-01   p_joint 2.621111e-02

Joint ci ratio: 8.055909e-02	ci left: 2.219739e-02	ci right 2.407041e-02	k: 2312	n:100000
Cons ci ratio: 7.558549e-03	ci left: 7.262034e-01	ci right 7.317233e-01	k: 72897	n:100000
KS ci ratio: 1.528990e-01	ci left: 6.030527e-03	ci right 7.038416e-03	k: 652	n:100000
FUT5   100000 perm   23 sec   (4349 perm/sec)   p_kst 6.520000e-03   p_cons 7.289700e-01   p_joint 2.312000e-02

Joint ci ratio: 8.173533e-02	ci left: 1.964399e-02	ci right 2.132688e-02	k: 2252	n:110000
Cons ci ratio: 7.206083e-03	ci left: 7.263719e-01	ci right 7.316342e-01	k: 80191	n:110000
KS ci ratio: 1.465349e-01	ci left: 5.989813e-03	ci right 6.945579e-03	k: 710	n:110000
FUT5   110000 perm   26 sec   (4272 perm/sec)   p_kst 6.454545e-03   p_cons 7.290091e-01   p_joint 2.047273e-02

Joint ci ratio: 7.462903e-02	ci left: 2.163558e-02	ci right 2.332094e-02	k: 2696	n:120000
Cons ci ratio: 6.900915e-03	ci left: 7.263919e-01	ci right 7.314303e-01	k: 87470	n:120000
KS ci ratio: 1.397208e-01	ci left: 6.061164e-03	ci right 6.979596e-03	k: 781	n:120000
FUT5   120000 perm   29 sec   (4198 perm/sec)   p_kst 6.508333e-03   p_cons 7.289167e-01   p_joint 2.246667e-02

Joint ci ratio: 7.232091e-02	ci left: 2.130014e-02	ci right 2.290589e-02	k: 2872	n:130000
Cons ci ratio: 6.634595e-03	ci left: 7.262278e-01	ci right 7.310697e-01	k: 94725	n:130000
KS ci ratio: 1.346534e-01	ci left: 6.040616e-03	ci right 6.920077e-03	k: 841	n:130000
FUT5   130000 perm   32 sec   (4127 perm/sec)   p_kst 6.469231e-03   p_cons 7.286538e-01   p_joint 2.209231e-02

Joint ci ratio: 6.995655e-02	ci left: 2.116777e-02	ci right 2.270926e-02	k: 3070	n:140000
Cons ci ratio: 6.389162e-03	ci left: 7.265703e-01	ci right 7.312345e-01	k: 102047	n:140000
KS ci ratio: 1.298107e-01	ci left: 6.051168e-03	ci right 6.898039e-03	k: 905	n:140000
FUT5   140000 perm   35 sec   (4052 perm/sec)   p_kst 6.464286e-03   p_cons 7.289071e-01   p_joint 2.192857e-02

Joint ci ratio: 6.243523e-02	ci left: 2.480658e-02	ci right 2.641183e-02	k: 3840	n:150000
Cons ci ratio: 6.175025e-03	ci left: 7.264889e-01	ci right 7.309955e-01	k: 109312	n:150000
KS ci ratio: 1.255860e-01	ci left: 6.047887e-03	ci right 6.864700e-03	k: 967	n:150000
FUT5   150000 perm   38 sec   (3982 perm/sec)   p_kst 6.446667e-03   p_cons 7.287467e-01   p_joint 2.560000e-02

Joint ci ratio: 5.636991e-02	ci left: 2.850988e-02	ci right 3.016973e-02	k: 4693	n:160000
Cons ci ratio: 5.979365e-03	ci left: 7.265329e-01	ci right 7.308963e-01	k: 116595	n:160000
KS ci ratio: 1.213932e-01	ci left: 6.081773e-03	ci right 6.873770e-03	k: 1035	n:160000
FUT5   160000 perm   41 sec   (3918 perm/sec)   p_kst 6.468750e-03   p_cons 7.287187e-01   p_joint 2.933125e-02

Joint ci ratio: 5.584755e-02	ci left: 2.737756e-02	ci right 2.895623e-02	k: 4787	n:170000
Cons ci ratio: 5.795244e-03	ci left: 7.269805e-01	ci right 7.312116e-01	k: 123947	n:170000
KS ci ratio: 1.168506e-01	ci left: 6.192025e-03	ci right 6.966123e-03	k: 1117	n:170000
FUT5   170000 perm   44 sec   (3852 perm/sec)   p_kst 6.570588e-03   p_cons 7.291000e-01   p_joint 2.815882e-02

Joint ci ratio: 5.583861e-02	ci left: 2.590534e-02	ci right 2.739885e-02	k: 4796	n:180000
Cons ci ratio: 5.628242e-03	ci left: 7.273022e-01	ci right 7.314127e-01	k: 131285	n:180000
KS ci ratio: 1.132107e-01	ci left: 6.241920e-03	ci right 6.996324e-03	k: 1190	n:180000
FUT5   180000 perm   48 sec   (3789 perm/sec)   p_kst 6.611111e-03   p_cons 7.293611e-01   p_joint 2.664444e-02

Joint ci ratio: 5.098942e-02	ci left: 2.939864e-02	ci right 3.094205e-02	k: 5731	n:190000
Cons ci ratio: 5.474742e-03	ci left: 7.276020e-01	ci right 7.316015e-01	k: 138625	n:190000
KS ci ratio: 1.045300e-01	ci left: 6.963138e-03	ci right 7.736218e-03	k: 1395	n:190000
FUT5   190000 perm   51 sec   (3731 perm/sec)   p_kst 7.342105e-03   p_cons 7.296053e-01   p_joint 3.016316e-02

Joint ci ratio: 4.840126e-02	ci left: 3.098587e-02	ci right 3.252774e-02	k: 6350	n:200000
Cons ci ratio: 5.336596e-03	ci left: 7.276175e-01	ci right 7.315158e-01	k: 145914	n:200000
KS ci ratio: 1.018300e-01	ci left: 6.980307e-03	ci right 7.734078e-03	k: 1470	n:200000
FUT5   200000 perm   54 sec   (3671 perm/sec)   p_kst 7.350000e-03   p_cons 7.295700e-01   p_joint 3.175000e-02

Joint ci ratio: 4.827079e-02	ci left: 2.971217e-02	ci right 3.118655e-02	k: 6393	n:210000
Cons ci ratio: 5.210102e-03	ci left: 7.275039e-01	ci right 7.313088e-01	k: 153176	n:210000
KS ci ratio: 9.949114e-02	ci left: 6.972851e-03	ci right 7.707513e-03	k: 1540	n:210000
FUT5   210000 perm   58 sec   (3618 perm/sec)   p_kst 7.333333e-03   p_cons 7.294095e-01   p_joint 3.044286e-02

Outputting figure to mutsig2_images.part000000000067/FUT5.4_1129_210000_0.0073333_0.72941_0.030443.png
                gene_name: FUT5
               theta_stop: 0.099 
                    nperm: 210000 
                     p_ks: 0.0073 
        ci_ks_bounds_left: 0.0070 
       ci_ks_bounds_right: 0.0077 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.030 
     ci_joint_bounds_left: 0.030 
    ci_joint_bounds_right: 0.031 

Current progress: 46 percent done.
FXR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.230204e-02	ci left: 9.046320e-01	ci right 9.159277e-01	k: 9104	n:10000
Cons ci ratio: 3.597175e-02	ci left: 5.329749e-01	ci right 5.526002e-01	k: 5428	n:10000
KS ci ratio: 3.552480e-02	ci left: 5.391843e-01	ci right 5.587872e-01	k: 5490	n:10000
FXR1   10000 perm   2 sec   (5583 perm/sec)   p_kst 5.490000e-01   p_cons 5.428000e-01   p_joint 9.104000e-01

Outputting figure to mutsig2_images.part000000000067/FXR1.4_1934_10000_0.549_0.5428_0.9104.png
                gene_name: FXR1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.92 

Current progress: 47 percent done.
FYTTD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.981388e-01	ci left: 7.692674e-03	ci right 1.160097e-02	k: 95	n:10000
Cons ci ratio: 7.198729e-02	ci left: 2.203995e-01	ci right 2.369589e-01	k: 2286	n:10000
KS ci ratio: 5.529567e-01	ci left: 3.627180e-03	ci right 6.472945e-03	k: 49	n:10000
FYTTD1   10000 perm   2 sec   (6125 perm/sec)   p_kst 4.900000e-03   p_cons 2.286000e-01   p_joint 9.500000e-03

Joint ci ratio: 2.089046e-01	ci left: 1.549097e-02	ci right 1.915129e-02	k: 345	n:20000
Cons ci ratio: 5.049544e-02	ci left: 2.256687e-01	ci right 2.374094e-01	k: 4630	n:20000
KS ci ratio: 3.991121e-01	ci left: 3.844683e-03	ci right 5.803559e-03	k: 95	n:20000
FYTTD1   20000 perm   4 sec   (5422 perm/sec)   p_kst 4.750000e-03   p_cons 2.315000e-01   p_joint 1.725000e-02

Joint ci ratio: 2.574802e-01	ci left: 6.679709e-03	ci right 8.684070e-03	k: 229	n:30000
Cons ci ratio: 3.975101e-02	ci left: 2.399097e-01	ci right 2.496731e-01	k: 7343	n:30000
KS ci ratio: 3.160988e-01	ci left: 4.294810e-03	ci right 5.936614e-03	k: 152	n:30000
FYTTD1   30000 perm   6 sec   (5149 perm/sec)   p_kst 5.066667e-03   p_cons 2.447667e-01   p_joint 7.633333e-03

Joint ci ratio: 2.678746e-01	ci left: 4.612062e-03	ci right 6.061178e-03	k: 212	n:40000
Cons ci ratio: 3.430714e-02	ci left: 2.418352e-01	ci right 2.503017e-01	k: 9842	n:40000
KS ci ratio: 2.751095e-01	ci left: 4.355699e-03	ci right 5.767626e-03	k: 201	n:40000
FYTTD1   40000 perm   8 sec   (4974 perm/sec)   p_kst 5.025000e-03   p_cons 2.460500e-01   p_joint 5.300000e-03

Joint ci ratio: 1.666861e-01	ci left: 1.002754e-02	ci right 1.186990e-02	k: 546	n:50000
Cons ci ratio: 3.065181e-02	ci left: 2.426874e-01	ci right 2.502620e-01	k: 12323	n:50000
KS ci ratio: 2.482997e-01	ci left: 4.344346e-03	ci right 5.594193e-03	k: 247	n:50000
FYTTD1   50000 perm   10 sec   (4838 perm/sec)   p_kst 4.940000e-03   p_cons 2.464600e-01   p_joint 1.092000e-02

Joint ci ratio: 1.929308e-01	ci left: 6.173903e-03	ci right 7.507803e-03	k: 409	n:60000
Cons ci ratio: 2.800856e-02	ci left: 2.426575e-01	ci right 2.495671e-01	k: 14766	n:60000
KS ci ratio: 2.312394e-01	ci left: 4.215580e-03	ci right 5.333151e-03	k: 285	n:60000
FYTTD1   60000 perm   13 sec   (4703 perm/sec)   p_kst 4.750000e-03   p_cons 2.461000e-01   p_joint 6.816667e-03

Joint ci ratio: 2.146256e-01	ci left: 4.233849e-03	ci right 5.265007e-03	k: 331	n:70000
Cons ci ratio: 2.594205e-02	ci left: 2.427561e-01	ci right 2.491507e-01	k: 17216	n:70000
KS ci ratio: 2.035270e-01	ci left: 4.734883e-03	ci right 5.821033e-03	k: 368	n:70000
FYTTD1   70000 perm   15 sec   (4582 perm/sec)   p_kst 5.257143e-03   p_cons 2.459429e-01   p_joint 4.728571e-03

Joint ci ratio: 1.257553e-01	ci left: 1.124485e-02	ci right 1.276584e-02	k: 959	n:80000
Cons ci ratio: 2.419854e-02	ci left: 2.440020e-01	ci right 2.499913e-01	k: 19759	n:80000
KS ci ratio: 1.945330e-01	ci left: 4.558686e-03	ci right 5.552729e-03	k: 403	n:80000
FYTTD1   80000 perm   18 sec   (4476 perm/sec)   p_kst 5.037500e-03   p_cons 2.469875e-01   p_joint 1.198750e-02

Joint ci ratio: 1.248579e-01	ci left: 1.015651e-02	ci right 1.151974e-02	k: 974	n:90000
Cons ci ratio: 2.282211e-02	ci left: 2.440523e-01	ci right 2.496974e-01	k: 22218	n:90000
KS ci ratio: 1.843270e-01	ci left: 4.539046e-03	ci right 5.471076e-03	k: 449	n:90000
FYTTD1   90000 perm   21 sec   (4373 perm/sec)   p_kst 4.988889e-03   p_cons 2.468667e-01   p_joint 1.082222e-02

Joint ci ratio: 1.369197e-01	ci left: 7.573072e-03	ci right 8.695738e-03	k: 812	n:100000
Cons ci ratio: 2.164733e-02	ci left: 2.442597e-01	ci right 2.496150e-01	k: 24693	n:100000
KS ci ratio: 1.739958e-01	ci left: 4.610506e-03	ci right 5.498575e-03	k: 504	n:100000
FYTTD1   100000 perm   23 sec   (4289 perm/sec)   p_kst 5.040000e-03   p_cons 2.469300e-01   p_joint 8.120000e-03

Joint ci ratio: 1.165340e-01	ci left: 9.588130e-03	ci right 1.078336e-02	k: 1119	n:110000
Cons ci ratio: 2.065729e-02	ci left: 2.440731e-01	ci right 2.491766e-01	k: 27128	n:110000
KS ci ratio: 1.661242e-01	ci left: 4.617872e-03	ci right 5.463094e-03	k: 553	n:110000
FYTTD1   110000 perm   26 sec   (4208 perm/sec)   p_kst 5.027273e-03   p_cons 2.466182e-01   p_joint 1.017273e-02

Joint ci ratio: 1.065264e-01	ci left: 1.056357e-02	ci right 1.176023e-02	k: 1338	n:120000
Cons ci ratio: 1.976557e-02	ci left: 2.444124e-01	ci right 2.492998e-01	k: 29622	n:120000
KS ci ratio: 1.587043e-01	ci left: 4.656778e-03	ci right 5.467424e-03	k: 606	n:120000
FYTTD1   120000 perm   29 sec   (4124 perm/sec)   p_kst 5.050000e-03   p_cons 2.468500e-01   p_joint 1.115000e-02

Joint ci ratio: 1.135475e-01	ci left: 8.568506e-03	ci right 9.607415e-03	k: 1180	n:130000
Cons ci ratio: 1.900217e-02	ci left: 2.442741e-01	ci right 2.489680e-01	k: 32060	n:130000
KS ci ratio: 1.503761e-01	ci left: 4.808848e-03	ci right 5.598086e-03	k: 675	n:130000
FYTTD1   130000 perm   32 sec   (4048 perm/sec)   p_kst 5.192308e-03   p_cons 2.466154e-01   p_joint 9.076923e-03

Joint ci ratio: 1.112797e-01	ci left: 8.296563e-03	ci right 9.281086e-03	k: 1229	n:140000
Cons ci ratio: 1.830294e-02	ci left: 2.445219e-01	ci right 2.490458e-01	k: 34549	n:140000
KS ci ratio: 1.456115e-01	ci left: 4.774880e-03	ci right 5.531553e-03	k: 720	n:140000
FYTTD1   140000 perm   35 sec   (3976 perm/sec)   p_kst 5.142857e-03   p_cons 2.467786e-01   p_joint 8.778571e-03

Joint ci ratio: 1.070507e-01	ci left: 8.385462e-03	ci right 9.340335e-03	k: 1328	n:150000
Cons ci ratio: 1.770068e-02	ci left: 2.442143e-01	ci right 2.485822e-01	k: 36959	n:150000
KS ci ratio: 1.400829e-01	ci left: 4.829414e-03	ci right 5.563246e-03	k: 778	n:150000
FYTTD1   150000 perm   38 sec   (3909 perm/sec)   p_kst 5.186667e-03   p_cons 2.463933e-01   p_joint 8.853333e-03

Joint ci ratio: 1.085311e-01	ci left: 7.648359e-03	ci right 8.532105e-03	k: 1293	n:160000
Cons ci ratio: 1.716346e-02	ci left: 2.437479e-01	ci right 2.479738e-01	k: 39337	n:160000
KS ci ratio: 1.344951e-01	ci left: 4.925927e-03	ci right 5.642179e-03	k: 844	n:160000
FYTTD1   160000 perm   42 sec   (3848 perm/sec)   p_kst 5.275000e-03   p_cons 2.458562e-01   p_joint 8.081250e-03

Joint ci ratio: 1.089823e-01	ci left: 7.141130e-03	ci right 7.969914e-03	k: 1283	n:170000
Cons ci ratio: 1.667365e-02	ci left: 2.433089e-01	ci right 2.474057e-01	k: 41710	n:170000
KS ci ratio: 1.310539e-01	ci left: 4.892075e-03	ci right 5.583787e-03	k: 889	n:170000
FYTTD1   170000 perm   45 sec   (3787 perm/sec)   p_kst 5.229412e-03   p_cons 2.453529e-01   p_joint 7.547059e-03

Joint ci ratio: 1.059326e-01	ci left: 7.149871e-03	ci right 7.955000e-03	k: 1358	n:180000
Cons ci ratio: 1.621521e-02	ci left: 2.431087e-01	ci right 2.470884e-01	k: 44117	n:180000
KS ci ratio: 1.282784e-01	ci left: 4.829921e-03	ci right 5.497280e-03	k: 928	n:180000
FYTTD1   180000 perm   48 sec   (3728 perm/sec)   p_kst 5.155556e-03   p_cons 2.450944e-01   p_joint 7.544444e-03

Joint ci ratio: 1.029446e-01	ci left: 7.183623e-03	ci right 7.968356e-03	k: 1438	n:190000
Cons ci ratio: 1.578631e-02	ci left: 2.430779e-01	ci right 2.469509e-01	k: 46552	n:190000
KS ci ratio: 1.241974e-01	ci left: 4.891737e-03	ci right 5.544552e-03	k: 990	n:190000
FYTTD1   190000 perm   52 sec   (3670 perm/sec)   p_kst 5.210526e-03   p_cons 2.450105e-01   p_joint 7.568421e-03

Joint ci ratio: 1.024990e-01	ci left: 6.887718e-03	ci right 7.636671e-03	k: 1451	n:200000
Cons ci ratio: 1.539787e-02	ci left: 2.428570e-01	ci right 2.466304e-01	k: 48948	n:200000
KS ci ratio: 1.209454e-01	ci left: 4.908874e-03	ci right 5.545596e-03	k: 1044	n:200000
FYTTD1   200000 perm   55 sec   (3615 perm/sec)   p_kst 5.220000e-03   p_cons 2.447400e-01   p_joint 7.255000e-03

Joint ci ratio: 9.713750e-02	ci left: 7.321276e-03	ci right 8.073361e-03	k: 1615	n:210000
Cons ci ratio: 1.501623e-02	ci left: 2.431617e-01	ci right 2.468454e-01	k: 51450	n:210000
KS ci ratio: 1.180983e-01	ci left: 4.910715e-03	ci right 5.531634e-03	k: 1095	n:210000
FYTTD1   210000 perm   59 sec   (3561 perm/sec)   p_kst 5.214286e-03   p_cons 2.450000e-01   p_joint 7.690476e-03

Joint ci ratio: 9.512958e-02	ci left: 7.294581e-03	ci right 8.027571e-03	k: 1684	n:220000
Cons ci ratio: 1.467694e-02	ci left: 2.430543e-01	ci right 2.466524e-01	k: 53867	n:220000
KS ci ratio: 1.147911e-01	ci left: 4.969946e-03	ci right 5.579564e-03	k: 1159	n:220000
FYTTD1   220000 perm   63 sec   (3508 perm/sec)   p_kst 5.268182e-03   p_cons 2.448500e-01   p_joint 7.654545e-03

Joint ci ratio: 9.517401e-02	ci left: 6.973126e-03	ci right 7.674158e-03	k: 1683	n:230000
Cons ci ratio: 1.434684e-02	ci left: 2.432867e-01	ci right 2.468066e-01	k: 56360	n:230000
KS ci ratio: 1.115182e-01	ci left: 5.045382e-03	ci right 5.645448e-03	k: 1228	n:230000
FYTTD1   230000 perm   67 sec   (3457 perm/sec)   p_kst 5.339130e-03   p_cons 2.450435e-01   p_joint 7.317391e-03

Joint ci ratio: 1.002932e-01	ci left: 6.007655e-03	ci right 6.646022e-03	k: 1517	n:240000
Cons ci ratio: 1.404500e-02	ci left: 2.433177e-01	ci right 2.467634e-01	k: 58809	n:240000
KS ci ratio: 1.094897e-01	ci left: 5.021523e-03	ci right 5.607188e-03	k: 1274	n:240000
FYTTD1   240000 perm   70 sec   (3407 perm/sec)   p_kst 5.308333e-03   p_cons 2.450375e-01   p_joint 6.320833e-03

Joint ci ratio: 1.038772e-01	ci left: 5.369671e-03	ci right 5.961878e-03	k: 1415	n:250000
Cons ci ratio: 1.375862e-02	ci left: 2.434228e-01	ci right 2.467991e-01	k: 61277	n:250000
KS ci ratio: 1.072421e-01	ci left: 5.030809e-03	ci right 5.604751e-03	k: 1328	n:250000
FYTTD1   250000 perm   74 sec   (3357 perm/sec)   p_kst 5.312000e-03   p_cons 2.451080e-01   p_joint 5.660000e-03

Joint ci ratio: 1.078255e-01	ci left: 4.784886e-03	ci right 5.333928e-03	k: 1314	n:260000
Cons ci ratio: 1.348640e-02	ci left: 2.435933e-01	ci right 2.469046e-01	k: 63764	n:260000
KS ci ratio: 1.050892e-01	ci left: 5.043240e-03	ci right 5.606336e-03	k: 1383	n:260000
FYTTD1   260000 perm   79 sec   (3310 perm/sec)   p_kst 5.319231e-03   p_cons 2.452462e-01   p_joint 5.053846e-03

Joint ci ratio: 1.076302e-01	ci left: 4.625667e-03	ci right 5.155417e-03	k: 1319	n:270000
Cons ci ratio: 1.322735e-02	ci left: 2.438184e-01	ci right 2.470686e-01	k: 66269	n:270000
KS ci ratio: 1.030610e-01	ci left: 5.054856e-03	ci right 5.607696e-03	k: 1438	n:270000
FYTTD1   270000 perm   83 sec   (3264 perm/sec)   p_kst 5.325926e-03   p_cons 2.454407e-01   p_joint 4.885185e-03

Joint ci ratio: 1.061943e-01	ci left: 4.585593e-03	ci right 5.103309e-03	k: 1355	n:280000
Cons ci ratio: 1.300009e-02	ci left: 2.435325e-01	ci right 2.467227e-01	k: 68635	n:280000
KS ci ratio: 1.014879e-01	ci left: 5.030925e-03	ci right 5.572249e-03	k: 1483	n:280000
FYTTD1   280000 perm   87 sec   (3221 perm/sec)   p_kst 5.296429e-03   p_cons 2.451250e-01   p_joint 4.839286e-03

Joint ci ratio: 1.056954e-01	ci left: 4.471095e-03	ci right 4.973365e-03	k: 1368	n:290000
Cons ci ratio: 1.277116e-02	ci left: 2.436419e-01	ci right 2.467769e-01	k: 71110	n:290000
KS ci ratio: 9.991905e-02	ci left: 5.015430e-03	ci right 5.546255e-03	k: 1530	n:290000
FYTTD1   290000 perm   91 sec   (3178 perm/sec)   p_kst 5.275862e-03   p_cons 2.452069e-01   p_joint 4.717241e-03

Joint ci ratio: 1.038161e-01	ci left: 4.484360e-03	ci right 4.978616e-03	k: 1418	n:300000
Cons ci ratio: 1.255505e-02	ci left: 2.437113e-01	ci right 2.467937e-01	k: 73575	n:300000
KS ci ratio: 9.801569e-02	ci left: 5.043302e-03	ci right 5.566324e-03	k: 1590	n:300000
FYTTD1   300000 perm   96 sec   (3138 perm/sec)   p_kst 5.300000e-03   p_cons 2.452500e-01   p_joint 4.726667e-03

Joint ci ratio: 1.037506e-01	ci left: 4.345971e-03	ci right 4.824653e-03	k: 1420	n:310000
Cons ci ratio: 1.235127e-02	ci left: 2.437250e-01	ci right 2.467572e-01	k: 76024	n:310000
KS ci ratio: 9.654096e-02	ci left: 5.034833e-03	ci right 5.548676e-03	k: 1639	n:310000
FYTTD1   310000 perm   100 sec   (3097 perm/sec)   p_kst 5.287097e-03   p_cons 2.452387e-01   p_joint 4.580645e-03

Joint ci ratio: 9.527273e-02	ci left: 5.011693e-03	ci right 5.516080e-03	k: 1683	n:320000
Cons ci ratio: 1.215043e-02	ci left: 2.439410e-01	ci right 2.469261e-01	k: 78538	n:320000
KS ci ratio: 9.515918e-02	ci left: 5.023897e-03	ci right 5.528876e-03	k: 1687	n:320000
FYTTD1   320000 perm   105 sec   (3056 perm/sec)   p_kst 5.271875e-03   p_cons 2.454312e-01   p_joint 5.259375e-03

Outputting figure to mutsig2_images.part000000000067/FYTTD1.4_1022_320000_0.0052719_0.24543_0.0052594.png
                gene_name: FYTTD1
               theta_stop: 0.095 
                    nperm: 320000 
                     p_ks: 0.0053 
        ci_ks_bounds_left: 0.0050 
       ci_ks_bounds_right: 0.0055 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.0053 
     ci_joint_bounds_left: 0.0050 
    ci_joint_bounds_right: 0.0055 

Current progress: 49 percent done.
FRMD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.274675e-02	ci left: 3.463103e-01	ci right 3.651738e-01	k: 3557	n:10000
KS ci ratio: 8.634954e-03	ci left: 9.495015e-01	ci right 9.578316e-01	k: 9538	n:10000
FRMD3   10000 perm   2 sec   (5978 perm/sec)   p_kst 9.538000e-01   p_cons 3.557000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000067/FRMD3.3_1850_10000_0.9538_0.3557_1.png
                gene_name: FRMD3
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 51 percent done.
FRMD4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.090273e-02	ci left: 2.257305e-01	ci right 2.424247e-01	k: 2340	n:10000
Cons ci ratio: 7.602909e-02	ci left: 2.019537e-01	ci right 2.180156e-01	k: 2099	n:10000
KS ci ratio: 6.985136e-02	ci left: 2.310633e-01	ci right 2.478887e-01	k: 2394	n:10000
FRMD4A   10000 perm   2 sec   (5297 perm/sec)   p_kst 2.394000e-01   p_cons 2.099000e-01   p_joint 2.340000e-01

Outputting figure to mutsig2_images.part000000000067/FRMD4A.3_3212_10000_0.2394_0.2099_0.234.png
                gene_name: FRMD4A
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 53 percent done.
FRMD6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.959375e-02	ci left: 1.873727e-01	ci right 2.030052e-01	k: 1951	n:10000
Cons ci ratio: 3.632097e-02	ci left: 5.281686e-01	ci right 5.478092e-01	k: 5380	n:10000
KS ci ratio: 8.246634e-02	ci left: 1.766450e-01	ci right 1.919393e-01	k: 1842	n:10000
FRMD6   10000 perm   2 sec   (5939 perm/sec)   p_kst 1.842000e-01   p_cons 5.380000e-01   p_joint 1.951000e-01

Outputting figure to mutsig2_images.part000000000067/FRMD6.3_1897_10000_0.1842_0.538_0.1951.png
                gene_name: FRMD6
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 54 percent done.
FRZB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.044305e-02	ci left: 9.287493e-01	ci right 9.385962e-01	k: 9338	n:10000
KS ci ratio: 8.051572e-03	ci left: 9.555548e-01	ci right 9.633747e-01	k: 9596	n:10000
FRZB   10000 perm   2 sec   (6501 perm/sec)   p_kst 9.596000e-01   p_cons 9.338000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000067/FRZB.3_1002_10000_0.9596_0.9338_1.png
                gene_name: FRZB
               theta_stop: 0.010 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 56 percent done.
FTCD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.837970e-02	ci left: 8.121240e-01	ci right 8.272893e-01	k: 8198	n:10000
Cons ci ratio: 6.067200e-02	ci left: 2.854779e-01	ci right 3.034419e-01	k: 2944	n:10000
KS ci ratio: 4.337237e-03	ci left: 9.856678e-01	ci right 9.900411e-01	k: 9880	n:10000
FTCD   10000 perm   2 sec   (6117 perm/sec)   p_kst 9.880000e-01   p_cons 2.944000e-01   p_joint 8.198000e-01

Outputting figure to mutsig2_images.part000000000067/FTCD.3_1682_10000_0.988_0.2944_0.8198.png
                gene_name: FTCD
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 58 percent done.
FTO
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.748628e-02	ci left: 3.081821e-01	ci right 3.265244e-01	k: 3173	n:10000
Cons ci ratio: 4.848410e-02	ci left: 3.855995e-01	ci right 4.048615e-01	k: 3952	n:10000
KS ci ratio: 7.600619e-02	ci left: 2.020522e-01	ci right 2.181170e-01	k: 2100	n:10000
FTO   10000 perm   2 sec   (5874 perm/sec)   p_kst 2.100000e-01   p_cons 3.952000e-01   p_joint 3.173000e-01

Outputting figure to mutsig2_images.part000000000067/FTO.3_1554_10000_0.21_0.3952_0.3173.png
                gene_name: FTO
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 60 percent done.
FUNDC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.452535e-02	ci left: 1.694660e-01	ci right 1.845227e-01	k: 1769	n:10000
Cons ci ratio: 1.376601e-01	ci left: 6.981515e-02	ci right 8.023404e-02	k: 749	n:10000
KS ci ratio: 6.361591e-02	ci left: 2.663640e-01	ci right 2.839672e-01	k: 2751	n:10000
FUNDC2   10000 perm   1 sec   (6877 perm/sec)   p_kst 2.751000e-01   p_cons 7.490000e-02   p_joint 1.769000e-01

Joint ci ratio: 5.997526e-02	ci left: 1.706952e-01	ci right 1.812992e-01	k: 3519	n:20000
Cons ci ratio: 9.292732e-02	ci left: 7.789098e-02	ci right 8.553115e-02	k: 1633	n:20000
KS ci ratio: 4.503995e-02	ci left: 2.684723e-01	ci right 2.808933e-01	k: 5493	n:20000
FUNDC2   20000 perm   3 sec   (5997 perm/sec)   p_kst 2.746500e-01   p_cons 8.165000e-02   p_joint 1.759500e-01

Outputting figure to mutsig2_images.part000000000067/FUNDC2.3_590_20000_0.27465_0.08165_0.17595.png
                gene_name: FUNDC2
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.082 
      ci_cons_bounds_left: 0.078 
     ci_cons_bounds_right: 0.086 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 61 percent done.
FUT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.524631e-02	ci left: 6.977684e-01	ci right 7.157111e-01	k: 7068	n:10000
KS ci ratio: 2.500293e-02	ci left: 7.018032e-01	ci right 7.196739e-01	k: 7108	n:10000
FUT3   10000 perm   2 sec   (6426 perm/sec)   p_kst 7.108000e-01   p_cons 7.068000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000067/FUT3.3_1090_10000_0.7108_0.7068_1.png
                gene_name: FUT3
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 63 percent done.
FXR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.949261e-02	ci left: 3.758456e-01	ci right 3.950212e-01	k: 3854	n:10000
KS ci ratio: 2.086125e-02	ci left: 7.710409e-01	ci right 7.873961e-01	k: 7793	n:10000
FXR2   10000 perm   2 sec   (5685 perm/sec)   p_kst 7.793000e-01   p_cons 3.854000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000067/FXR2.3_1990_10000_0.7793_0.3854_1.png
                gene_name: FXR2
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
FPR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.193658e-02	ci left: 5.913239e-01	ci right 6.106172e-01	k: 6010	n:10000
Cons ci ratio: 5.448234e-02	ci left: 3.317063e-01	ci right 3.503864e-01	k: 3410	n:10000
KS ci ratio: 5.689464e-02	ci left: 3.126467e-01	ci right 3.310572e-01	k: 3218	n:10000
FPR2   10000 perm   1 sec   (6709 perm/sec)   p_kst 3.218000e-01   p_cons 3.410000e-01   p_joint 6.010000e-01

Outputting figure to mutsig2_images.part000000000067/FPR2.2_1060_10000_0.3218_0.341_0.601.png
                gene_name: FPR2
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 67 percent done.
FRG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.426573e-01	ci left: 6.517166e-02	ci right 7.528044e-02	k: 701	n:10000
Cons ci ratio: 2.348632e-01	ci left: 2.391158e-02	ci right 3.036784e-02	k: 270	n:10000
KS ci ratio: 3.732628e-02	ci left: 5.145559e-01	ci right 5.342298e-01	k: 5244	n:10000
FRG1   10000 perm   1 sec   (6701 perm/sec)   p_kst 5.244000e-01   p_cons 2.700000e-02   p_joint 7.010000e-02

Joint ci ratio: 1.353497e-01	ci left: 3.751972e-02	ci right 4.301496e-02	k: 804	n:20000
Cons ci ratio: 1.660773e-01	ci left: 2.484562e-02	ci right 2.939326e-02	k: 541	n:20000
KS ci ratio: 2.647234e-02	ci left: 5.159999e-01	ci right 5.298935e-01	k: 10459	n:20000
FRG1   20000 perm   3 sec   (5910 perm/sec)   p_kst 5.229500e-01   p_cons 2.705000e-02   p_joint 4.020000e-02

Joint ci ratio: 1.097813e-01	ci left: 3.852441e-02	ci right 4.303174e-02	k: 1222	n:30000
Cons ci ratio: 1.375272e-01	ci left: 2.455070e-02	ci right 2.820847e-02	k: 790	n:30000
KS ci ratio: 2.169826e-02	ci left: 5.153619e-01	ci right 5.267007e-01	k: 15631	n:30000
FRG1   30000 perm   5 sec   (5624 perm/sec)   p_kst 5.210333e-01   p_cons 2.633333e-02   p_joint 4.073333e-02

Joint ci ratio: 9.464096e-02	ci left: 3.917540e-02	ci right 4.309157e-02	k: 1644	n:40000
Cons ci ratio: 1.198438e-01	ci left: 2.448676e-02	ci right 2.763256e-02	k: 1041	n:40000
KS ci ratio: 1.892208e-02	ci left: 5.126645e-01	ci right 5.224830e-01	k: 20703	n:40000
FRG1   40000 perm   7 sec   (5414 perm/sec)   p_kst 5.175750e-01   p_cons 2.602500e-02   p_joint 4.110000e-02

Joint ci ratio: 7.135741e-02	ci left: 5.488529e-02	ci right 5.896634e-02	k: 2845	n:50000
Cons ci ratio: 1.068762e-01	ci left: 2.479801e-02	ci right 2.761736e-02	k: 1309	n:50000
KS ci ratio: 1.689999e-02	ci left: 5.139094e-01	ci right 5.226885e-01	k: 25915	n:50000
FRG1   50000 perm   10 sec   (5256 perm/sec)   p_kst 5.183000e-01   p_cons 2.618000e-02   p_joint 5.690000e-02

Joint ci ratio: 7.777698e-02	ci left: 3.903473e-02	ci right 4.220990e-02	k: 2436	n:60000
Cons ci ratio: 9.840324e-02	ci left: 2.449730e-02	ci right 2.704885e-02	k: 1545	n:60000
KS ci ratio: 1.543376e-02	ci left: 5.140927e-01	ci right 5.221055e-01	k: 31086	n:60000
FRG1   60000 perm   12 sec   (5105 perm/sec)   p_kst 5.181000e-01   p_cons 2.575000e-02   p_joint 4.060000e-02

Outputting figure to mutsig2_images.part000000000067/FRG1.2_813_60000_0.5181_0.02575_0.0406.png
                gene_name: FRG1
               theta_stop: 0.098 
                    nperm: 60000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.026 
      ci_cons_bounds_left: 0.024 
     ci_cons_bounds_right: 0.027 
                  p_joint: 0.041 
     ci_joint_bounds_left: 0.039 
    ci_joint_bounds_right: 0.042 

Current progress: 68 percent done.
FRMD8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.415472e-02	ci left: 8.782779e-01	ci right 8.908971e-01	k: 8847	n:10000
Cons ci ratio: 2.013815e-02	ci left: 7.830994e-01	ci right 7.991306e-01	k: 7912	n:10000
KS ci ratio: 4.069629e-02	ci left: 4.713638e-01	ci right 4.910472e-01	k: 4812	n:10000
FRMD8   10000 perm   2 sec   (6462 perm/sec)   p_kst 4.812000e-01   p_cons 7.912000e-01   p_joint 8.847000e-01

Outputting figure to mutsig2_images.part000000000067/FRMD8.2_1435_10000_0.4812_0.7912_0.8847.png
                gene_name: FRMD8
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 70 percent done.
FRMPD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.206455e-02	ci left: 7.508973e-01	ci right 7.677513e-01	k: 7594	n:10000
Cons ci ratio: 3.069893e-02	ci left: 6.102019e-01	ci right 6.293283e-01	k: 6198	n:10000
KS ci ratio: 4.751436e-02	ci left: 3.952579e-01	ci right 4.145975e-01	k: 4049	n:10000
FRMPD4   10000 perm   2 sec   (5161 perm/sec)   p_kst 4.049000e-01   p_cons 6.198000e-01   p_joint 7.594000e-01

Outputting figure to mutsig2_images.part000000000067/FRMPD4.2_4037_10000_0.4049_0.6198_0.7594.png
                gene_name: FRMPD4
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 72 percent done.
FRRS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.549126e-02	ci left: 3.235641e-01	ci right 3.421333e-01	k: 3328	n:10000
Cons ci ratio: 8.821285e-02	ci left: 1.575769e-01	ci right 1.722188e-01	k: 1648	n:10000
KS ci ratio: 5.562896e-02	ci left: 3.224721e-01	ci right 3.410260e-01	k: 3317	n:10000
FRRS1   10000 perm   2 sec   (6497 perm/sec)   p_kst 3.317000e-01   p_cons 1.648000e-01   p_joint 3.328000e-01

Outputting figure to mutsig2_images.part000000000067/FRRS1.2_1941_10000_0.3317_0.1648_0.3328.png
                gene_name: FRRS1
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 74 percent done.
FRS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.537862e-01	ci left: 2.033901e-02	ci right 2.634310e-02	k: 232	n:10000
Cons ci ratio: 5.223374e-01	ci left: 4.145961e-03	ci right 7.153063e-03	k: 55	n:10000
KS ci ratio: 6.059909e-02	ci left: 2.859734e-01	ci right 3.039462e-01	k: 2949	n:10000
FRS3   10000 perm   2 sec   (6397 perm/sec)   p_kst 2.949000e-01   p_cons 5.500000e-03   p_joint 2.320000e-02

Joint ci ratio: 3.156909e-01	ci left: 6.443412e-03	ci right 8.902974e-03	k: 152	n:20000
Cons ci ratio: 4.012173e-01	ci left: 3.799699e-03	ci right 5.748583e-03	k: 94	n:20000
KS ci ratio: 4.248224e-02	ci left: 2.922124e-01	ci right 3.049462e-01	k: 5971	n:20000
FRS3   20000 perm   4 sec   (5598 perm/sec)   p_kst 2.985500e-01   p_cons 4.700000e-03   p_joint 7.600000e-03

Joint ci ratio: 2.302770e-01	ci left: 8.464779e-03	ci right 1.069841e-02	k: 286	n:30000
Cons ci ratio: 3.305211e-01	ci left: 3.896494e-03	ci right 5.468466e-03	k: 139	n:30000
KS ci ratio: 3.501234e-02	ci left: 2.895113e-01	ci right 2.998619e-01	k: 8840	n:30000
FRS3   30000 perm   6 sec   (5299 perm/sec)   p_kst 2.946667e-01   p_cons 4.633333e-03   p_joint 9.533333e-03

Joint ci ratio: 2.254682e-01	ci left: 6.654309e-03	ci right 8.368353e-03	k: 299	n:40000
Cons ci ratio: 2.764886e-01	ci left: 4.309143e-03	ci right 5.714198e-03	k: 199	n:40000
KS ci ratio: 3.031066e-02	ci left: 2.903592e-01	ci right 2.993206e-01	k: 11793	n:40000
FRS3   40000 perm   8 sec   (5106 perm/sec)   p_kst 2.948250e-01   p_cons 4.975000e-03   p_joint 7.475000e-03

Joint ci ratio: 1.228396e-01	ci left: 1.873260e-02	ci right 2.120357e-02	k: 997	n:50000
Cons ci ratio: 2.453347e-01	ci left: 4.456955e-03	ci right 5.721555e-03	k: 253	n:50000
KS ci ratio: 2.717014e-02	ci left: 2.899290e-01	ci right 2.979349e-01	k: 14696	n:50000
FRS3   50000 perm   10 sec   (4950 perm/sec)   p_kst 2.939200e-01   p_cons 5.060000e-03   p_joint 1.994000e-02

Joint ci ratio: 1.124054e-01	ci left: 1.874885e-02	ci right 2.099793e-02	k: 1191	n:60000
Cons ci ratio: 2.257529e-01	ci left: 4.435614e-03	ci right 5.579739e-03	k: 299	n:60000
KS ci ratio: 2.476147e-02	ci left: 2.909707e-01	ci right 2.982825e-01	k: 17677	n:60000
FRS3   60000 perm   12 sec   (4826 perm/sec)   p_kst 2.946167e-01   p_cons 4.983333e-03   p_joint 1.985000e-02

Joint ci ratio: 1.038642e-01	ci left: 1.890606e-02	ci right 2.099114e-02	k: 1395	n:70000
Cons ci ratio: 2.075223e-01	ci left: 4.545129e-03	ci right 5.610817e-03	k: 354	n:70000
KS ci ratio: 2.293281e-02	ci left: 2.910963e-01	ci right 2.978636e-01	k: 20613	n:70000
FRS3   70000 perm   15 sec   (4717 perm/sec)   p_kst 2.944714e-01   p_cons 5.057143e-03   p_joint 1.992857e-02

Joint ci ratio: 9.745041e-02	ci left: 1.885803e-02	ci right 2.080202e-02	k: 1585	n:80000
Cons ci ratio: 1.955082e-01	ci left: 4.511117e-03	ci right 5.500305e-03	k: 399	n:80000
KS ci ratio: 2.145095e-02	ci left: 2.913302e-01	ci right 2.976597e-01	k: 23559	n:80000
FRS3   80000 perm   17 sec   (4613 perm/sec)   p_kst 2.944875e-01   p_cons 4.987500e-03   p_joint 1.981250e-02

Joint ci ratio: 9.095192e-02	ci left: 1.930168e-02	ci right 2.115165e-02	k: 1819	n:90000
Cons ci ratio: 1.835091e-01	ci left: 4.581453e-03	ci right 5.517552e-03	k: 453	n:90000
KS ci ratio: 2.025447e-02	ci left: 2.908917e-01	ci right 2.968549e-01	k: 26448	n:90000
FRS3   90000 perm   20 sec   (4504 perm/sec)   p_kst 2.938667e-01   p_cons 5.033333e-03   p_joint 2.021111e-02

Joint ci ratio: 9.137874e-02	ci left: 1.724363e-02	ci right 1.890449e-02	k: 1806	n:100000
Cons ci ratio: 1.746926e-01	ci left: 4.572244e-03	ci right 5.456841e-03	k: 500	n:100000
KS ci ratio: 1.918493e-02	ci left: 2.916958e-01	ci right 2.973561e-01	k: 29452	n:100000
FRS3   100000 perm   23 sec   (4401 perm/sec)   p_kst 2.945200e-01   p_cons 5.000000e-03   p_joint 1.806000e-02

Joint ci ratio: 8.754658e-02	ci left: 1.711576e-02	ci right 1.869162e-02	k: 1968	n:110000
Cons ci ratio: 1.670357e-01	ci left: 4.565591e-03	ci right 5.406289e-03	k: 547	n:110000
KS ci ratio: 1.826825e-02	ci left: 2.923694e-01	ci right 2.977687e-01	k: 32457	n:110000
FRS3   110000 perm   26 sec   (4312 perm/sec)   p_kst 2.950636e-01   p_cons 4.972727e-03   p_joint 1.789091e-02

Joint ci ratio: 8.387916e-02	ci left: 1.712468e-02	ci right 1.863208e-02	k: 2144	n:120000
Cons ci ratio: 1.597659e-01	ci left: 4.592756e-03	ci right 5.398119e-03	k: 598	n:120000
KS ci ratio: 1.752482e-02	ci left: 2.916725e-01	ci right 2.968375e-01	k: 35310	n:120000
FRS3   120000 perm   28 sec   (4227 perm/sec)   p_kst 2.942500e-01   p_cons 4.983333e-03   p_joint 1.786667e-02

Joint ci ratio: 8.035556e-02	ci left: 1.725404e-02	ci right 1.870604e-02	k: 2336	n:130000
Cons ci ratio: 1.543270e-01	ci left: 4.557233e-03	ci right 5.326644e-03	k: 641	n:130000
KS ci ratio: 1.684529e-02	ci left: 2.915779e-01	ci right 2.965390e-01	k: 38227	n:130000
FRS3   130000 perm   31 sec   (4143 perm/sec)   p_kst 2.940538e-01   p_cons 4.930769e-03   p_joint 1.796923e-02

Joint ci ratio: 7.693245e-02	ci left: 1.750621e-02	ci right 1.891385e-02	k: 2548	n:140000
Cons ci ratio: 1.480033e-01	ci left: 4.616601e-03	ci right 5.361271e-03	k: 697	n:140000
KS ci ratio: 1.621428e-02	ci left: 2.921344e-01	ci right 2.969170e-01	k: 41233	n:140000
FRS3   140000 perm   34 sec   (4065 perm/sec)   p_kst 2.945214e-01   p_cons 4.978571e-03   p_joint 1.820000e-02

Joint ci ratio: 7.425561e-02	ci left: 1.756224e-02	ci right 1.892313e-02	k: 2735	n:150000
Cons ci ratio: 1.424933e-01	ci left: 4.662179e-03	ci right 5.383824e-03	k: 752	n:150000
KS ci ratio: 1.566758e-02	ci left: 2.921341e-01	ci right 2.967539e-01	k: 44166	n:150000
FRS3   150000 perm   38 sec   (3979 perm/sec)   p_kst 2.944400e-01   p_cons 5.013333e-03   p_joint 1.823333e-02

Joint ci ratio: 7.190272e-02	ci left: 1.758132e-02	ci right 1.889872e-02	k: 2917	n:160000
Cons ci ratio: 1.378995e-01	ci left: 4.678366e-03	ci right 5.377255e-03	k: 803	n:160000
KS ci ratio: 1.517268e-02	ci left: 2.921362e-01	ci right 2.966088e-01	k: 47099	n:160000
FRS3   160000 perm   41 sec   (3909 perm/sec)   p_kst 2.943688e-01   p_cons 5.018750e-03   p_joint 1.823125e-02

Joint ci ratio: 6.963446e-02	ci left: 1.766236e-02	ci right 1.894238e-02	k: 3110	n:170000
Cons ci ratio: 1.339596e-01	ci left: 4.675920e-03	ci right 5.352895e-03	k: 851	n:170000
KS ci ratio: 1.472921e-02	ci left: 2.919347e-01	ci right 2.962724e-01	k: 49997	n:170000
FRS3   170000 perm   44 sec   (3843 perm/sec)   p_kst 2.941000e-01   p_cons 5.005882e-03   p_joint 1.829412e-02

Joint ci ratio: 6.767254e-02	ci left: 1.768033e-02	ci right 1.892414e-02	k: 3293	n:180000
Cons ci ratio: 1.301215e-01	ci left: 4.690123e-03	ci right 5.348196e-03	k: 902	n:180000
KS ci ratio: 1.430446e-02	ci left: 2.922784e-01	ci right 2.964949e-01	k: 52989	n:180000
FRS3   180000 perm   48 sec   (3781 perm/sec)   p_kst 2.943833e-01   p_cons 5.011111e-03   p_joint 1.829444e-02

Joint ci ratio: 6.579057e-02	ci left: 1.773829e-02	ci right 1.895015e-02	k: 3484	n:190000
Cons ci ratio: 1.259337e-01	ci left: 4.754056e-03	ci right 5.398029e-03	k: 963	n:190000
KS ci ratio: 1.392663e-02	ci left: 2.922251e-01	ci right 2.963286e-01	k: 55912	n:190000
FRS3   190000 perm   51 sec   (3717 perm/sec)   p_kst 2.942737e-01   p_cons 5.068421e-03   p_joint 1.833684e-02

Joint ci ratio: 6.398646e-02	ci left: 1.783026e-02	ci right 1.901376e-02	k: 3683	n:200000
Cons ci ratio: 1.226683e-01	ci left: 4.768271e-03	ci right 5.396205e-03	k: 1015	n:200000
KS ci ratio: 1.357920e-02	ci left: 2.921186e-01	ci right 2.961174e-01	k: 58823	n:200000
FRS3   200000 perm   55 sec   (3654 perm/sec)   p_kst 2.941150e-01   p_cons 5.075000e-03   p_joint 1.841500e-02

Joint ci ratio: 6.242138e-02	ci left: 1.785761e-02	ci right 1.901288e-02	k: 3870	n:210000
Cons ci ratio: 1.198136e-01	ci left: 4.767468e-03	ci right 5.379650e-03	k: 1064	n:210000
KS ci ratio: 1.325805e-02	ci left: 2.919759e-01	ci right 2.958774e-01	k: 61724	n:210000
FRS3   210000 perm   58 sec   (3598 perm/sec)   p_kst 2.939238e-01   p_cons 5.066667e-03   p_joint 1.842857e-02

Joint ci ratio: 6.102712e-02	ci left: 1.784697e-02	ci right 1.897486e-02	k: 4049	n:220000
Cons ci ratio: 1.170439e-01	ci left: 4.775717e-03	ci right 5.373801e-03	k: 1115	n:220000
KS ci ratio: 1.296036e-02	ci left: 2.917927e-01	ci right 2.956036e-01	k: 64613	n:220000
FRS3   220000 perm   62 sec   (3546 perm/sec)   p_kst 2.936955e-01   p_cons 5.068182e-03   p_joint 1.840455e-02

Joint ci ratio: 5.965766e-02	ci left: 1.787608e-02	ci right 1.897958e-02	k: 4237	n:230000
Cons ci ratio: 1.141631e-01	ci left: 4.808742e-03	ci right 5.395141e-03	k: 1172	n:230000
KS ci ratio: 1.267376e-02	ci left: 2.918911e-01	ci right 2.956184e-01	k: 67563	n:230000
FRS3   230000 perm   66 sec   (3490 perm/sec)   p_kst 2.937522e-01   p_cons 5.095652e-03   p_joint 1.842174e-02

Joint ci ratio: 5.833616e-02	ci left: 1.792767e-02	ci right 1.900900e-02	k: 4431	n:240000
Cons ci ratio: 1.116220e-01	ci left: 4.827027e-03	ci right 5.401692e-03	k: 1226	n:240000
KS ci ratio: 1.240873e-02	ci left: 2.918699e-01	ci right 2.955184e-01	k: 70486	n:240000
FRS3   240000 perm   70 sec   (3434 perm/sec)   p_kst 2.936917e-01   p_cons 5.108333e-03   p_joint 1.846250e-02

Joint ci ratio: 5.664508e-02	ci left: 1.826330e-02	ci right 1.933190e-02	k: 4698	n:250000
Cons ci ratio: 1.089871e-01	ci left: 4.867330e-03	ci right 5.432236e-03	k: 1286	n:250000
KS ci ratio: 1.216329e-02	ci left: 2.917274e-01	ci right 2.953014e-01	k: 73378	n:250000
FRS3   250000 perm   74 sec   (3389 perm/sec)   p_kst 2.935120e-01   p_cons 5.144000e-03   p_joint 1.879200e-02

Joint ci ratio: 5.543511e-02	ci left: 1.834588e-02	ci right 1.939565e-02	k: 4905	n:260000
Cons ci ratio: 1.065304e-01	ci left: 4.904679e-03	ci right 5.460285e-03	k: 1346	n:260000
KS ci ratio: 1.194017e-02	ci left: 2.913085e-01	ci right 2.948115e-01	k: 76195	n:260000
FRS3   260000 perm   78 sec   (3341 perm/sec)   p_kst 2.930577e-01   p_cons 5.176923e-03   p_joint 1.886538e-02

Joint ci ratio: 4.884342e-02	ci left: 2.273059e-02	ci right 2.387226e-02	k: 6290	n:270000
Cons ci ratio: 1.041954e-01	ci left: 4.943002e-03	ci right 5.489924e-03	k: 1407	n:270000
KS ci ratio: 1.171159e-02	ci left: 2.915313e-01	ci right 2.949694e-01	k: 79177	n:270000
FRS3   270000 perm   82 sec   (3297 perm/sec)   p_kst 2.932481e-01   p_cons 5.211111e-03   p_joint 2.329630e-02

Joint ci ratio: 4.789943e-02	ci left: 2.280086e-02	ci right 2.392332e-02	k: 6540	n:280000
Cons ci ratio: 1.015912e-01	ci left: 5.020482e-03	ci right 5.561264e-03	k: 1480	n:280000
KS ci ratio: 1.150289e-02	ci left: 2.914785e-01	ci right 2.948543e-01	k: 82086	n:280000
FRS3   280000 perm   86 sec   (3252 perm/sec)   p_kst 2.931643e-01   p_cons 5.285714e-03   p_joint 2.335714e-02

Joint ci ratio: 5.220378e-02	ci left: 1.857428e-02	ci right 1.957330e-02	k: 5530	n:290000
Cons ci ratio: 9.943056e-02	ci left: 5.065871e-03	ci right 5.599260e-03	k: 1545	n:290000
KS ci ratio: 1.130674e-02	ci left: 2.913645e-01	ci right 2.946810e-01	k: 84976	n:290000
FRS3   290000 perm   90 sec   (3209 perm/sec)   p_kst 2.930207e-01   p_cons 5.327586e-03   p_joint 1.906897e-02

Outputting figure to mutsig2_images.part000000000067/FRS3.2_1499_290000_0.29302_0.0053276_0.019069.png
                gene_name: FRS3
               theta_stop: 0.099 
                    nperm: 290000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.0053 
      ci_cons_bounds_left: 0.0051 
     ci_cons_bounds_right: 0.0056 
                  p_joint: 0.019 
     ci_joint_bounds_left: 0.019 
    ci_joint_bounds_right: 0.020 

Current progress: 75 percent done.
FSCN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.127108e-01	ci left: 1.017865e-01	ci right 1.140430e-01	k: 1078	n:10000
Cons ci ratio: 5.521756e-02	ci left: 3.257483e-01	ci right 3.443479e-01	k: 3350	n:10000
KS ci ratio: 7.788726e-02	ci left: 1.941685e-01	ci right 2.100054e-01	k: 2020	n:10000
FSCN3   10000 perm   2 sec   (6375 perm/sec)   p_kst 2.020000e-01   p_cons 3.350000e-01   p_joint 1.078000e-01

Joint ci ratio: 7.401342e-02	ci left: 1.184290e-01	ci right 1.275809e-01	k: 2459	n:20000
Cons ci ratio: 3.895289e-02	ci left: 3.295526e-01	ci right 3.426951e-01	k: 6722	n:20000
KS ci ratio: 5.589978e-02	ci left: 1.918039e-01	ci right 2.028842e-01	k: 3946	n:20000
FSCN3   20000 perm   4 sec   (5594 perm/sec)   p_kst 1.973000e-01   p_cons 3.361000e-01   p_joint 1.229500e-01

Outputting figure to mutsig2_images.part000000000067/FSCN3.2_1521_20000_0.1973_0.3361_0.12295.png
                gene_name: FSCN3
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 77 percent done.
FSD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.011761e-02	ci left: 1.518829e-01	ci right 1.663162e-01	k: 1590	n:10000
Cons ci ratio: 3.940154e-01	ci left: 7.872887e-03	ci right 1.182054e-02	k: 97	n:10000
KS ci ratio: 1.649515e-02	ci left: 8.424422e-01	ci right 8.565536e-01	k: 8496	n:10000
FSD2   10000 perm   2 sec   (6105 perm/sec)   p_kst 8.496000e-01   p_cons 9.700000e-03   p_joint 1.590000e-01

Joint ci ratio: 9.866417e-02	ci left: 6.952973e-02	ci right 7.679495e-02	k: 1462	n:20000
Cons ci ratio: 2.993624e-01	ci left: 7.228280e-03	ci right 9.817657e-03	k: 169	n:20000
KS ci ratio: 1.161517e-02	ci left: 8.456342e-01	ci right 8.555636e-01	k: 17013	n:20000
FSD2   20000 perm   4 sec   (5315 perm/sec)   p_kst 8.506500e-01   p_cons 8.450000e-03   p_joint 7.310000e-02

Joint ci ratio: 7.281238e-02	ci left: 8.488318e-02	ci right 9.133018e-02	k: 2642	n:30000
Cons ci ratio: 2.439484e-01	ci left: 7.492322e-03	ci right 9.604510e-03	k: 255	n:30000
KS ci ratio: 9.518972e-03	ci left: 8.456056e-01	ci right 8.537266e-01	k: 25491	n:30000
FSD2   30000 perm   6 sec   (5063 perm/sec)   p_kst 8.497000e-01   p_cons 8.500000e-03   p_joint 8.806667e-02

Joint ci ratio: 7.462829e-02	ci left: 6.211194e-02	ci right 6.695152e-02	k: 2580	n:40000
Cons ci ratio: 2.098245e-01	ci left: 7.742128e-03	ci right 9.580270e-03	k: 345	n:40000
KS ci ratio: 8.316872e-03	ci left: 8.438635e-01	ci right 8.509360e-01	k: 33897	n:40000
FSD2   40000 perm   8 sec   (4887 perm/sec)   p_kst 8.474250e-01   p_cons 8.625000e-03   p_joint 6.450000e-02

Joint ci ratio: 9.629407e-02	ci left: 3.053314e-02	ci right 3.364150e-02	k: 1603	n:50000
Cons ci ratio: 1.897871e-01	ci left: 7.656790e-03	ci right 9.281053e-03	k: 422	n:50000
KS ci ratio: 7.453312e-03	ci left: 8.437338e-01	ci right 8.500658e-01	k: 42346	n:50000
FSD2   50000 perm   11 sec   (4761 perm/sec)   p_kst 8.469200e-01   p_cons 8.440000e-03   p_joint 3.206000e-02

Joint ci ratio: 1.108037e-01	ci left: 1.929999e-02	ci right 2.158006e-02	k: 1225	n:60000
Cons ci ratio: 1.754612e-01	ci left: 7.525821e-03	ci right 8.989010e-03	k: 494	n:60000
KS ci ratio: 6.812716e-03	ci left: 8.436746e-01	ci right 8.494585e-01	k: 50795	n:60000
FSD2   60000 perm   13 sec   (4647 perm/sec)   p_kst 8.465833e-01   p_cons 8.233333e-03   p_joint 2.041667e-02

Joint ci ratio: 1.028539e-01	ci left: 1.928200e-02	ci right 2.138660e-02	k: 1422	n:70000
Cons ci ratio: 1.633753e-01	ci left: 7.490414e-03	ci right 8.836549e-03	k: 570	n:70000
KS ci ratio: 6.301377e-03	ci left: 8.441391e-01	ci right 8.494893e-01	k: 59278	n:70000
FSD2   70000 perm   15 sec   (4536 perm/sec)   p_kst 8.468286e-01   p_cons 8.142857e-03   p_joint 2.031429e-02

Joint ci ratio: 9.179381e-02	ci left: 2.126347e-02	ci right 2.332138e-02	k: 1782	n:80000
Cons ci ratio: 1.525378e-01	ci left: 7.562666e-03	ci right 8.823391e-03	k: 654	n:80000
KS ci ratio: 5.923407e-03	ci left: 8.430270e-01	ci right 8.480479e-01	k: 67644	n:80000
FSD2   80000 perm   18 sec   (4439 perm/sec)   p_kst 8.455500e-01   p_cons 8.175000e-03   p_joint 2.227500e-02

Joint ci ratio: 1.259065e-01	ci left: 9.984250e-03	ci right 1.133646e-02	k: 958	n:90000
Cons ci ratio: 1.453002e-01	ci left: 7.439049e-03	ci right 8.615214e-03	k: 721	n:90000
KS ci ratio: 5.591165e-03	ci left: 8.428649e-01	ci right 8.476017e-01	k: 76072	n:90000
FSD2   90000 perm   21 sec   (4346 perm/sec)   p_kst 8.452444e-01   p_cons 8.011111e-03   p_joint 1.064444e-02

Joint ci ratio: 8.313412e-02	ci left: 2.084502e-02	ci right 2.266286e-02	k: 2174	n:100000
Cons ci ratio: 1.376039e-01	ci left: 7.495799e-03	ci right 8.613018e-03	k: 804	n:100000
KS ci ratio: 5.313853e-03	ci left: 8.425106e-01	ci right 8.470094e-01	k: 84477	n:100000
FSD2   100000 perm   23 sec   (4259 perm/sec)   p_kst 8.447700e-01   p_cons 8.040000e-03   p_joint 2.174000e-02

Joint ci ratio: 1.052064e-01	ci left: 1.180750e-02	ci right 1.312749e-02	k: 1370	n:110000
Cons ci ratio: 1.313874e-01	ci left: 7.499602e-03	ci right 8.562946e-03	k: 882	n:110000
KS ci ratio: 5.068785e-03	ci left: 8.425003e-01	ci right 8.467906e-01	k: 92912	n:110000
FSD2   110000 perm   26 sec   (4180 perm/sec)   p_kst 8.446545e-01   p_cons 8.018182e-03   p_joint 1.245455e-02

Joint ci ratio: 8.931139e-02	ci left: 1.509385e-02	ci right 1.651302e-02	k: 1895	n:120000
Cons ci ratio: 1.264087e-01	ci left: 7.447214e-03	ci right 8.460116e-03	k: 953	n:120000
KS ci ratio: 4.855384e-03	ci left: 8.424623e-01	ci right 8.465710e-01	k: 101343	n:120000
FSD2   120000 perm   29 sec   (4106 perm/sec)   p_kst 8.445250e-01   p_cons 7.941667e-03   p_joint 1.579167e-02

Joint ci ratio: 8.585011e-02	ci left: 1.510651e-02	ci right 1.646906e-02	k: 2051	n:130000
Cons ci ratio: 1.214792e-01	ci left: 7.463209e-03	ci right 8.435855e-03	k: 1032	n:130000
KS ci ratio: 4.659602e-03	ci left: 8.428433e-01	ci right 8.467874e-01	k: 109827	n:130000
FSD2   130000 perm   32 sec   (4037 perm/sec)   p_kst 8.448231e-01   p_cons 7.938462e-03   p_joint 1.577692e-02

Joint ci ratio: 1.016332e-01	ci left: 9.979616e-03	ci right 1.105509e-02	k: 1471	n:140000
Cons ci ratio: 1.176729e-01	ci left: 7.401296e-03	ci right 8.333546e-03	k: 1100	n:140000
KS ci ratio: 4.487195e-03	ci left: 8.430864e-01	ci right 8.468850e-01	k: 118299	n:140000
FSD2   140000 perm   35 sec   (3963 perm/sec)   p_kst 8.449929e-01   p_cons 7.857143e-03   p_joint 1.050714e-02

Joint ci ratio: 1.006385e-01	ci left: 9.509132e-03	ci right 1.052328e-02	k: 1501	n:150000
Cons ci ratio: 1.144502e-01	ci left: 7.315665e-03	ci right 8.210187e-03	k: 1163	n:150000
KS ci ratio: 4.334370e-03	ci left: 8.431920e-01	ci right 8.468613e-01	k: 126755	n:150000
FSD2   150000 perm   39 sec   (3895 perm/sec)   p_kst 8.450333e-01   p_cons 7.753333e-03   p_joint 1.000667e-02

Joint ci ratio: 9.738558e-02	ci left: 9.536532e-03	ci right 1.051884e-02	k: 1603	n:160000
Cons ci ratio: 1.111140e-01	ci left: 7.289663e-03	ci right 8.153319e-03	k: 1234	n:160000
KS ci ratio: 4.194463e-03	ci left: 8.433931e-01	ci right 8.469443e-01	k: 135228	n:160000
FSD2   160000 perm   42 sec   (3828 perm/sec)   p_kst 8.451750e-01   p_cons 7.712500e-03   p_joint 1.001875e-02

Joint ci ratio: 7.271924e-02	ci left: 1.619437e-02	ci right 1.742219e-02	k: 2856	n:170000
Cons ci ratio: 1.083885e-01	ci left: 7.221260e-03	ci right 8.054486e-03	k: 1297	n:170000
KS ci ratio: 4.067099e-03	ci left: 8.435840e-01	ci right 8.470277e-01	k: 143703	n:170000
FSD2   170000 perm   45 sec   (3766 perm/sec)   p_kst 8.453118e-01   p_cons 7.629412e-03   p_joint 1.680000e-02

Joint ci ratio: 9.198353e-02	ci left: 9.529188e-03	ci right 1.045336e-02	k: 1797	n:180000
Cons ci ratio: 1.048877e-01	ci left: 7.295944e-03	ci right 8.108921e-03	k: 1385	n:180000
KS ci ratio: 3.952434e-03	ci left: 8.436378e-01	ci right 8.469844e-01	k: 152157	n:180000
FSD2   180000 perm   49 sec   (3703 perm/sec)   p_kst 8.453167e-01   p_cons 7.694444e-03   p_joint 9.983333e-03

Joint ci ratio: 8.788202e-02	ci left: 9.907500e-03	ci right 1.082332e-02	k: 1968	n:190000
Cons ci ratio: 1.024437e-01	ci left: 7.255428e-03	ci right 8.043916e-03	k: 1452	n:190000
KS ci ratio: 3.843311e-03	ci left: 8.439357e-01	ci right 8.471906e-01	k: 160658	n:190000
FSD2   190000 perm   52 sec   (3647 perm/sec)   p_kst 8.455684e-01   p_cons 7.642105e-03   p_joint 1.035789e-02

Joint ci ratio: 8.550336e-02	ci left: 9.955102e-03	ci right 1.084917e-02	k: 2079	n:200000
Cons ci ratio: 9.953786e-02	ci left: 7.311807e-03	ci right 8.082565e-03	k: 1538	n:200000
KS ci ratio: 3.747120e-03	ci left: 8.438985e-01	ci right 8.470715e-01	k: 169098	n:200000
FSD2   200000 perm   56 sec   (3585 perm/sec)   p_kst 8.454900e-01   p_cons 7.690000e-03   p_joint 1.039500e-02

Outputting figure to mutsig2_images.part000000000067/FSD2.2_2298_200000_0.84549_0.00769_0.010395.png
                gene_name: FSD2
               theta_stop: 0.100 
                    nperm: 200000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.0077 
      ci_cons_bounds_left: 0.0073 
     ci_cons_bounds_right: 0.0081 
                  p_joint: 0.010 
     ci_joint_bounds_left: 0.0100 
    ci_joint_bounds_right: 0.011 

Current progress: 79 percent done.
FSHB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.162371e-02	ci left: 7.582837e-01	ci right 7.749607e-01	k: 7667	n:10000
Cons ci ratio: 1.051876e-02	ci left: 9.278190e-01	ci right 9.377271e-01	k: 9329	n:10000
KS ci ratio: 3.439163e-02	ci left: 5.552156e-01	ci right 5.747465e-01	k: 5650	n:10000
FSHB   10000 perm   1 sec   (7622 perm/sec)   p_kst 5.650000e-01   p_cons 9.329000e-01   p_joint 7.667000e-01

Outputting figure to mutsig2_images.part000000000067/FSHB.2_398_10000_0.565_0.9329_0.7667.png
                gene_name: FSHB
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 81 percent done.
FSTL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.462512e-03	ci left: 9.849077e-01	ci right 9.894019e-01	k: 9873	n:10000
KS ci ratio: 1.143829e-02	ci left: 9.161579e-01	ci right 9.267950e-01	k: 9216	n:10000
FSTL1   10000 perm   1 sec   (6816 perm/sec)   p_kst 9.216000e-01   p_cons 9.873000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000067/FSTL1.2_967_10000_0.9216_0.9873_1.png
                gene_name: FSTL1
               theta_stop: 0.011 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
FTH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.993788e-02	ci left: 4.807559e-01	ci right 5.004496e-01	k: 4906	n:10000
Cons ci ratio: 9.986532e-02	ci left: 1.267935e-01	ci right 1.402208e-01	k: 1334	n:10000
KS ci ratio: 3.615328e-02	ci left: 5.304715e-01	ci right 5.501050e-01	k: 5403	n:10000
FTH1   10000 perm   1 sec   (7017 perm/sec)   p_kst 5.403000e-01   p_cons 1.334000e-01   p_joint 4.906000e-01

Outputting figure to mutsig2_images.part000000000067/FTH1.2_568_10000_0.5403_0.1334_0.4906.png
                gene_name: FTH1
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 84 percent done.
FTSJ2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.604104e-02	ci left: 8.495769e-01	ci right 8.634147e-01	k: 8566	n:10000
Cons ci ratio: 5.955229e-02	ci left: 2.932083e-01	ci right 3.113070e-01	k: 3022	n:10000
KS ci ratio: 2.485708e-02	ci left: 7.042245e-01	ci right 7.220512e-01	k: 7132	n:10000
FTSJ2   10000 perm   1 sec   (7401 perm/sec)   p_kst 7.132000e-01   p_cons 3.022000e-01   p_joint 8.566000e-01

Outputting figure to mutsig2_images.part000000000067/FTSJ2.2_753_10000_0.7132_0.3022_0.8566.png
                gene_name: FTSJ2
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 86 percent done.
FTSJD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.596919e-02	ci left: 8.506986e-01	ci right 8.644924e-01	k: 8577	n:10000
Cons ci ratio: 6.782292e-02	ci left: 2.418334e-01	ci right 2.589122e-01	k: 2503	n:10000
KS ci ratio: 2.338006e-02	ci left: 7.288590e-01	ci right 7.462025e-01	k: 7376	n:10000
FTSJD2   10000 perm   2 sec   (5624 perm/sec)   p_kst 7.376000e-01   p_cons 2.503000e-01   p_joint 8.577000e-01

Outputting figure to mutsig2_images.part000000000067/FTSJD2.2_2600_10000_0.7376_0.2503_0.8577.png
                gene_name: FTSJD2
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 88 percent done.
FUBP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.921176e-02	ci left: 3.785325e-01	ci right 3.977327e-01	k: 3881	n:10000
KS ci ratio: 6.030900e-02	ci left: 2.879553e-01	ci right 3.059631e-01	k: 2969	n:10000
FUBP3   10000 perm   2 sec   (6449 perm/sec)   p_kst 2.969000e-01   p_cons 3.881000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000067/FUBP3.2_1795_10000_0.2969_0.3881_1.png
                gene_name: FUBP3
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
FUCA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.575415e-03	ci left: 9.943270e-01	ci right 9.969714e-01	k: 9958	n:10000
Cons ci ratio: 2.957621e-02	ci left: 6.276875e-01	ci right 6.466326e-01	k: 6372	n:10000
KS ci ratio: 9.124547e-02	ci left: 1.486448e-01	ci right 1.629564e-01	k: 1557	n:10000
FUCA1   10000 perm   1 sec   (6746 perm/sec)   p_kst 1.557000e-01   p_cons 6.372000e-01   p_joint 9.958000e-01

Outputting figure to mutsig2_images.part000000000067/FUCA1.2_1433_10000_0.1557_0.6372_0.9958.png
                gene_name: FUCA1
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1.00 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 1.00 

Current progress: 91 percent done.
FUK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.329427e-02	ci left: 8.907739e-01	ci right 9.027938e-01	k: 8969	n:10000
KS ci ratio: 1.566060e-02	ci left: 8.554928e-01	ci right 8.690954e-01	k: 8624	n:10000
FUK   10000 perm   2 sec   (5300 perm/sec)   p_kst 8.624000e-01   p_cons 8.969000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000067/FUK.2_3347_10000_0.8624_0.8969_1.png
                gene_name: FUK
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
FUT6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.346460e-02	ci left: 7.274446e-01	ci right 7.448176e-01	k: 7362	n:10000
Cons ci ratio: 6.951078e-03	ci left: 9.660453e-01	ci right 9.728776e-01	k: 9696	n:10000
KS ci ratio: 4.026683e-02	ci left: 4.766589e-01	ci right 4.963490e-01	k: 4865	n:10000
FUT6   10000 perm   2 sec   (6611 perm/sec)   p_kst 4.865000e-01   p_cons 9.696000e-01   p_joint 7.362000e-01

Outputting figure to mutsig2_images.part000000000067/FUT6.2_1084_10000_0.4865_0.9696_0.7362.png
                gene_name: FUT6
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.74 

Current progress: 95 percent done.
FUT8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.959510e+00	ci left: 6.187149e-05	ci right 8.764745e-04	k: 3	n:10000
Cons ci ratio: 5.406084e-02	ci left: 3.351826e-01	ci right 3.539081e-01	k: 3445	n:10000
KS ci ratio: 1.959510e+00	ci left: 6.187149e-05	ci right 8.764745e-04	k: 3	n:10000
FUT8   10000 perm   2 sec   (6214 perm/sec)   p_kst 3.000000e-04   p_cons 3.445000e-01   p_joint 3.000000e-04

Joint ci ratio: 1.239272e+00	ci left: 2.057886e-04	ci right 8.540675e-04	k: 9	n:20000
Cons ci ratio: 4.190127e-02	ci left: 2.979768e-01	ci right 3.107801e-01	k: 6087	n:20000
KS ci ratio: 1.239272e+00	ci left: 2.057886e-04	ci right 8.540675e-04	k: 9	n:20000
FUT8   20000 perm   4 sec   (5443 perm/sec)   p_kst 4.500000e-04   p_cons 3.043500e-01   p_joint 4.500000e-04

Joint ci ratio: 1.086959e+00	ci left: 2.067024e-04	ci right 6.986151e-04	k: 12	n:30000
Cons ci ratio: 3.439899e-02	ci left: 2.968736e-01	ci right 3.072980e-01	k: 9062	n:30000
KS ci ratio: 1.086959e+00	ci left: 2.067024e-04	ci right 6.986151e-04	k: 12	n:30000
FUT8   30000 perm   6 sec   (5168 perm/sec)   p_kst 4.000000e-04   p_cons 3.020667e-01   p_joint 4.000000e-04

Joint ci ratio: 8.990848e-01	ci left: 2.667196e-04	ci right 7.111011e-04	k: 18	n:40000
Cons ci ratio: 2.980102e-02	ci left: 2.974280e-01	ci right 3.064508e-01	k: 12077	n:40000
KS ci ratio: 8.990848e-01	ci left: 2.667196e-04	ci right 7.111011e-04	k: 18	n:40000
FUT8   40000 perm   8 sec   (4975 perm/sec)   p_kst 4.500000e-04   p_cons 3.019250e-01   p_joint 4.500000e-04

Joint ci ratio: 8.355546e-01	ci left: 2.600048e-04	ci right 6.419433e-04	k: 21	n:50000
Cons ci ratio: 2.659868e-02	ci left: 2.987941e-01	ci right 3.068688e-01	k: 15141	n:50000
KS ci ratio: 8.355546e-01	ci left: 2.600048e-04	ci right 6.419433e-04	k: 21	n:50000
FUT8   50000 perm   10 sec   (4832 perm/sec)   p_kst 4.200000e-04   p_cons 3.028200e-01   p_joint 4.200000e-04

Joint ci ratio: 7.838301e-01	ci left: 2.563038e-04	ci right 5.951102e-04	k: 24	n:60000
Cons ci ratio: 2.436326e-02	ci left: 2.977297e-01	ci right 3.050895e-01	k: 18084	n:60000
KS ci ratio: 7.838301e-01	ci left: 2.563038e-04	ci right 5.951102e-04	k: 24	n:60000
FUT8   60000 perm   13 sec   (4714 perm/sec)   p_kst 4.000000e-04   p_cons 3.014000e-01   p_joint 4.000000e-04

Joint ci ratio: 7.406569e-01	ci left: 2.542030e-04	ci right 5.611448e-04	k: 27	n:70000
Cons ci ratio: 2.255766e-02	ci left: 2.979734e-01	ci right 3.047859e-01	k: 21096	n:70000
KS ci ratio: 7.406569e-01	ci left: 2.542030e-04	ci right 5.611448e-04	k: 27	n:70000
FUT8   70000 perm   15 sec   (4603 perm/sec)   p_kst 3.857143e-04   p_cons 3.013714e-01   p_joint 3.857143e-04

Joint ci ratio: 6.928217e-01	ci left: 2.633022e-04	ci right 5.499806e-04	k: 31	n:80000
Cons ci ratio: 2.111759e-02	ci left: 2.978599e-01	ci right 3.042296e-01	k: 24083	n:80000
KS ci ratio: 6.928217e-01	ci left: 2.633022e-04	ci right 5.499806e-04	k: 31	n:80000
FUT8   80000 perm   18 sec   (4499 perm/sec)   p_kst 3.875000e-04   p_cons 3.010375e-01   p_joint 3.875000e-04

Joint ci ratio: 6.357702e-01	ci left: 2.894762e-04	ci right 5.666184e-04	k: 37	n:90000
Cons ci ratio: 1.994540e-02	ci left: 2.972951e-01	ci right 3.032956e-01	k: 27026	n:90000
KS ci ratio: 6.357702e-01	ci left: 2.894762e-04	ci right 5.666184e-04	k: 37	n:90000
FUT8   90000 perm   20 sec   (4406 perm/sec)   p_kst 4.111111e-04   p_cons 3.002889e-01   p_joint 4.111111e-04

Joint ci ratio: 6.047391e-01	ci left: 2.942386e-04	ci right 5.561706e-04	k: 41	n:100000
Cons ci ratio: 1.892187e-02	ci left: 2.974498e-01	ci right 3.031418e-01	k: 30029	n:100000
KS ci ratio: 6.047391e-01	ci left: 2.942386e-04	ci right 5.561706e-04	k: 41	n:100000
FUT8   100000 perm   23 sec   (4318 perm/sec)   p_kst 4.100000e-04   p_cons 3.002900e-01   p_joint 4.100000e-04

Joint ci ratio: 5.383212e-01	ci left: 3.530749e-04	ci right 6.198733e-04	k: 52	n:110000
Cons ci ratio: 1.804559e-02	ci left: 2.974831e-01	ci right 3.029093e-01	k: 33021	n:110000
KS ci ratio: 5.383212e-01	ci left: 3.530749e-04	ci right 6.198733e-04	k: 52	n:110000
FUT8   110000 perm   26 sec   (4236 perm/sec)   p_kst 4.727273e-04   p_cons 3.001909e-01   p_joint 4.727273e-04

Joint ci ratio: 5.284493e-01	ci left: 3.380714e-04	ci right 5.871121e-04	k: 54	n:120000
Cons ci ratio: 1.728042e-02	ci left: 2.975243e-01	ci right 3.027187e-01	k: 36014	n:120000
KS ci ratio: 5.284493e-01	ci left: 3.380714e-04	ci right 5.871121e-04	k: 54	n:120000
FUT8   120000 perm   29 sec   (4156 perm/sec)   p_kst 4.500000e-04   p_cons 3.001167e-01   p_joint 4.500000e-04

Joint ci ratio: 5.146044e-01	ci left: 3.321029e-04	ci right 5.680410e-04	k: 57	n:130000
Cons ci ratio: 1.661382e-02	ci left: 2.973407e-01	ci right 3.023297e-01	k: 38978	n:130000
KS ci ratio: 5.146044e-01	ci left: 3.321029e-04	ci right 5.680410e-04	k: 57	n:130000
FUT8   130000 perm   32 sec   (4084 perm/sec)   p_kst 4.384615e-04   p_cons 2.998308e-01   p_joint 4.384615e-04

Joint ci ratio: 5.059596e-01	ci left: 3.208260e-04	ci right 5.435789e-04	k: 59	n:140000
Cons ci ratio: 1.598674e-02	ci left: 2.980277e-01	ci right 3.028377e-01	k: 42060	n:140000
KS ci ratio: 5.059596e-01	ci left: 3.208260e-04	ci right 5.435789e-04	k: 59	n:140000
FUT8   140000 perm   35 sec   (4014 perm/sec)   p_kst 4.214286e-04   p_cons 3.004286e-01   p_joint 4.214286e-04

Joint ci ratio: 4.977359e-01	ci left: 3.110816e-04	ci right 5.223501e-04	k: 61	n:150000
Cons ci ratio: 1.543275e-02	ci left: 2.984331e-01	ci right 3.030812e-01	k: 45113	n:150000
KS ci ratio: 4.977359e-01	ci left: 3.110816e-04	ci right 5.223501e-04	k: 61	n:150000
FUT8   150000 perm   38 sec   (3942 perm/sec)   p_kst 4.066667e-04   p_cons 3.007533e-01   p_joint 4.066667e-04

Joint ci ratio: 4.861159e-01	ci left: 3.080619e-04	ci right 5.107628e-04	k: 64	n:160000
Cons ci ratio: 1.493684e-02	ci left: 2.986719e-01	ci right 3.031728e-01	k: 48147	n:160000
KS ci ratio: 4.861159e-01	ci left: 3.080619e-04	ci right 5.107628e-04	k: 64	n:160000
FUT8   160000 perm   41 sec   (3876 perm/sec)   p_kst 4.000000e-04   p_cons 3.009188e-01   p_joint 4.000000e-04

Joint ci ratio: 4.618772e-01	ci left: 3.261998e-04	ci right 5.267762e-04	k: 71	n:170000
Cons ci ratio: 1.449760e-02	ci left: 2.985441e-01	ci right 3.029097e-01	k: 51123	n:170000
KS ci ratio: 4.618772e-01	ci left: 3.261998e-04	ci right 5.267762e-04	k: 71	n:170000
FUT8   170000 perm   45 sec   (3810 perm/sec)   p_kst 4.176471e-04   p_cons 3.007235e-01   p_joint 4.176471e-04

Joint ci ratio: 4.525470e-01	ci left: 3.228240e-04	ci right 5.160853e-04	k: 74	n:180000
Cons ci ratio: 1.408547e-02	ci left: 2.987151e-01	ci right 3.029580e-01	k: 54150	n:180000
KS ci ratio: 4.525470e-01	ci left: 3.228240e-04	ci right 5.160853e-04	k: 74	n:180000
FUT8   180000 perm   48 sec   (3749 perm/sec)   p_kst 4.111111e-04   p_cons 3.008333e-01   p_joint 4.111111e-04

Joint ci ratio: 4.525521e-01	ci left: 3.058326e-04	ci right 4.889242e-04	k: 74	n:190000
Cons ci ratio: 1.369803e-02	ci left: 2.991323e-01	ci right 3.032633e-01	k: 57227	n:190000
KS ci ratio: 4.525521e-01	ci left: 3.058326e-04	ci right 4.889242e-04	k: 74	n:190000
FUT8   190000 perm   51 sec   (3693 perm/sec)   p_kst 3.894737e-04   p_cons 3.011947e-01   p_joint 3.894737e-04

Joint ci ratio: 4.409462e-01	ci left: 3.082906e-04	ci right 4.867141e-04	k: 78	n:200000
Cons ci ratio: 1.334231e-02	ci left: 2.994642e-01	ci right 3.034915e-01	k: 60295	n:200000
KS ci ratio: 4.409462e-01	ci left: 3.082906e-04	ci right 4.867141e-04	k: 78	n:200000
FUT8   200000 perm   55 sec   (3638 perm/sec)   p_kst 3.900000e-04   p_cons 3.014750e-01   p_joint 3.900000e-04

Joint ci ratio: 4.276205e-01	ci left: 3.148168e-04	ci right 4.899339e-04	k: 83	n:210000
Cons ci ratio: 1.300955e-02	ci left: 2.998751e-01	ci right 3.038066e-01	k: 63386	n:210000
KS ci ratio: 4.276205e-01	ci left: 3.148168e-04	ci right 4.899339e-04	k: 83	n:210000
FUT8   210000 perm   59 sec   (3582 perm/sec)   p_kst 3.952381e-04   p_cons 3.018381e-01   p_joint 3.952381e-04

Joint ci ratio: 4.226209e-01	ci left: 3.086248e-04	ci right 4.777228e-04	k: 85	n:220000
Cons ci ratio: 1.270352e-02	ci left: 3.001499e-01	ci right 3.039917e-01	k: 66455	n:220000
KS ci ratio: 4.226209e-01	ci left: 3.086248e-04	ci right 4.777228e-04	k: 85	n:220000
FUT8   220000 perm   62 sec   (3526 perm/sec)   p_kst 3.863636e-04   p_cons 3.020682e-01   p_joint 3.863636e-04

Joint ci ratio: 4.086056e-01	ci left: 3.185660e-04	ci right 4.857513e-04	k: 91	n:230000
Cons ci ratio: 1.240710e-02	ci left: 3.007750e-01	ci right 3.045343e-01	k: 69610	n:230000
KS ci ratio: 4.086056e-01	ci left: 3.185660e-04	ci right 4.857513e-04	k: 91	n:230000
FUT8   230000 perm   66 sec   (3474 perm/sec)   p_kst 3.956522e-04   p_cons 3.026522e-01   p_joint 3.956522e-04

Joint ci ratio: 4.000025e-01	ci left: 3.202642e-04	ci right 4.838644e-04	k: 95	n:240000
Cons ci ratio: 1.214498e-02	ci left: 3.008456e-01	ci right 3.045258e-01	k: 72644	n:240000
KS ci ratio: 4.000025e-01	ci left: 3.202642e-04	ci right 4.838644e-04	k: 95	n:240000
FUT8   240000 perm   70 sec   (3418 perm/sec)   p_kst 3.958333e-04   p_cons 3.026833e-01   p_joint 3.958333e-04

Joint ci ratio: 3.938960e-01	ci left: 3.182556e-04	ci right 4.777020e-04	k: 98	n:250000
Cons ci ratio: 1.189914e-02	ci left: 3.008994e-01	ci right 3.045052e-01	k: 75675	n:250000
KS ci ratio: 3.938960e-01	ci left: 3.182556e-04	ci right 4.777020e-04	k: 98	n:250000
FUT8   250000 perm   74 sec   (3367 perm/sec)   p_kst 3.920000e-04   p_cons 3.027000e-01   p_joint 3.920000e-04

Joint ci ratio: 3.899781e-01	ci left: 3.129490e-04	ci right 4.677759e-04	k: 100	n:260000
Cons ci ratio: 1.166722e-02	ci left: 3.009651e-01	ci right 3.045009e-01	k: 78710	n:260000
KS ci ratio: 3.899781e-01	ci left: 3.129490e-04	ci right 4.677759e-04	k: 100	n:260000
FUT8   260000 perm   78 sec   (3318 perm/sec)   p_kst 3.846154e-04   p_cons 3.027308e-01   p_joint 3.846154e-04

Joint ci ratio: 3.771260e-01	ci left: 3.247854e-04	ci right 4.788637e-04	k: 107	n:270000
Cons ci ratio: 1.145297e-02	ci left: 3.008564e-01	ci right 3.043256e-01	k: 81699	n:270000
KS ci ratio: 3.771260e-01	ci left: 3.247854e-04	ci right 4.788637e-04	k: 107	n:270000
FUT8   270000 perm   83 sec   (3272 perm/sec)   p_kst 3.962963e-04   p_cons 3.025889e-01   p_joint 3.962963e-04

Joint ci ratio: 3.686875e-01	ci left: 3.293698e-04	ci right 4.812844e-04	k: 112	n:280000
Cons ci ratio: 1.124830e-02	ci left: 3.008238e-01	ci right 3.042303e-01	k: 84707	n:280000
KS ci ratio: 3.686875e-01	ci left: 3.293698e-04	ci right 4.812844e-04	k: 112	n:280000
FUT8   280000 perm   87 sec   (3228 perm/sec)   p_kst 4.000000e-04   p_cons 3.025250e-01   p_joint 4.000000e-04

Joint ci ratio: 3.577707e-01	ci left: 3.399480e-04	ci right 4.910190e-04	k: 119	n:290000
Cons ci ratio: 1.105612e-02	ci left: 3.007217e-01	ci right 3.040684e-01	k: 87694	n:290000
KS ci ratio: 3.577707e-01	ci left: 3.399480e-04	ci right 4.910190e-04	k: 119	n:290000
FUT8   290000 perm   91 sec   (3183 perm/sec)   p_kst 4.103448e-04   p_cons 3.023931e-01   p_joint 4.103448e-04

Joint ci ratio: 3.464078e-01	ci left: 3.529258e-04	ci right 5.036661e-04	k: 127	n:300000
Cons ci ratio: 1.087003e-02	ci left: 3.007600e-01	ci right 3.040505e-01	k: 90721	n:300000
KS ci ratio: 3.464078e-01	ci left: 3.529258e-04	ci right 5.036661e-04	k: 127	n:300000
FUT8   300000 perm   96 sec   (3138 perm/sec)   p_kst 4.233333e-04   p_cons 3.024033e-01   p_joint 4.233333e-04

Joint ci ratio: 3.411190e-01	ci left: 3.533304e-04	ci right 5.014317e-04	k: 131	n:310000
Cons ci ratio: 1.069303e-02	ci left: 3.007963e-01	ci right 3.040332e-01	k: 93748	n:310000
KS ci ratio: 3.411190e-01	ci left: 3.533304e-04	ci right 5.014317e-04	k: 131	n:310000
FUT8   310000 perm   100 sec   (3099 perm/sec)   p_kst 4.225806e-04   p_cons 3.024129e-01   p_joint 4.225806e-04

Joint ci ratio: 3.373082e-01	ci left: 3.508653e-04	ci right 4.959327e-04	k: 134	n:320000
Cons ci ratio: 1.052698e-02	ci left: 3.007277e-01	ci right 3.039133e-01	k: 96742	n:320000
KS ci ratio: 3.373082e-01	ci left: 3.508653e-04	ci right 4.959327e-04	k: 134	n:320000
FUT8   320000 perm   105 sec   (3058 perm/sec)   p_kst 4.187500e-04   p_cons 3.023188e-01   p_joint 4.187500e-04

Joint ci ratio: 3.336223e-01	ci left: 3.485582e-04	ci right 4.907584e-04	k: 137	n:330000
Cons ci ratio: 1.036657e-02	ci left: 3.007394e-01	ci right 3.038762e-01	k: 99761	n:330000
KS ci ratio: 3.336223e-01	ci left: 3.485582e-04	ci right 4.907584e-04	k: 137	n:330000
FUT8   330000 perm   109 sec   (3019 perm/sec)   p_kst 4.151515e-04   p_cons 3.023061e-01   p_joint 4.151515e-04

Joint ci ratio: 3.277374e-01	ci left: 3.517917e-04	ci right 4.922466e-04	k: 142	n:340000
Cons ci ratio: 1.021883e-02	ci left: 3.005216e-01	ci right 3.036112e-01	k: 102702	n:340000
KS ci ratio: 3.277374e-01	ci left: 3.517917e-04	ci right 4.922466e-04	k: 142	n:340000
FUT8   340000 perm   114 sec   (2980 perm/sec)   p_kst 4.176471e-04   p_cons 3.020647e-01   p_joint 4.176471e-04

Joint ci ratio: 3.265990e-01	ci left: 3.443628e-04	ci right 4.812737e-04	k: 143	n:350000
Cons ci ratio: 1.007306e-02	ci left: 3.004906e-01	ci right 3.035356e-01	k: 105704	n:350000
KS ci ratio: 3.265990e-01	ci left: 3.443628e-04	ci right 4.812737e-04	k: 143	n:350000
FUT8   350000 perm   119 sec   (2942 perm/sec)   p_kst 4.085714e-04   p_cons 3.020114e-01   p_joint 4.085714e-04

Joint ci ratio: 3.232497e-01	ci left: 3.424508e-04	ci right 4.769158e-04	k: 146	n:360000
Cons ci ratio: 9.925969e-03	ci left: 3.007750e-01	ci right 3.037781e-01	k: 108819	n:360000
KS ci ratio: 3.232497e-01	ci left: 3.424508e-04	ci right 4.769158e-04	k: 146	n:360000
FUT8   360000 perm   124 sec   (2906 perm/sec)   p_kst 4.055556e-04   p_cons 3.022750e-01   p_joint 4.055556e-04

Joint ci ratio: 3.189395e-01	ci left: 3.431350e-04	ci right 4.757053e-04	k: 150	n:370000
Cons ci ratio: 9.791090e-03	ci left: 3.007880e-01	ci right 3.037502e-01	k: 111839	n:370000
KS ci ratio: 3.189395e-01	ci left: 3.431350e-04	ci right 4.757053e-04	k: 150	n:370000
FUT8   370000 perm   129 sec   (2870 perm/sec)   p_kst 4.054054e-04   p_cons 3.022676e-01   p_joint 4.054054e-04

Joint ci ratio: 3.147973e-01	ci left: 3.437944e-04	ci right 4.745474e-04	k: 154	n:380000
Cons ci ratio: 9.657828e-03	ci left: 3.009635e-01	ci right 3.038869e-01	k: 114921	n:380000
KS ci ratio: 3.147973e-01	ci left: 3.437944e-04	ci right 4.745474e-04	k: 154	n:380000
FUT8   380000 perm   134 sec   (2834 perm/sec)   p_kst 4.052632e-04   p_cons 3.024237e-01   p_joint 4.052632e-04

Joint ci ratio: 3.069735e-01	ci left: 3.538924e-04	ci right 4.844869e-04	k: 162	n:390000
Cons ci ratio: 9.537277e-03	ci left: 3.008025e-01	ci right 3.036876e-01	k: 117875	n:390000
KS ci ratio: 3.069735e-01	ci left: 3.538924e-04	ci right 4.844869e-04	k: 162	n:390000
FUT8   390000 perm   139 sec   (2798 perm/sec)   p_kst 4.153846e-04   p_cons 3.022436e-01   p_joint 4.153846e-04

Joint ci ratio: 3.014744e-01	ci left: 3.589004e-04	ci right 4.885159e-04	k: 168	n:400000
Cons ci ratio: 9.419901e-03	ci left: 3.007047e-01	ci right 3.035532e-01	k: 120851	n:400000
KS ci ratio: 3.014744e-01	ci left: 3.589004e-04	ci right 4.885159e-04	k: 168	n:400000
FUT8   400000 perm   145 sec   (2765 perm/sec)   p_kst 4.200000e-04   p_cons 3.021275e-01   p_joint 4.200000e-04

Joint ci ratio: 2.997070e-01	ci left: 3.546568e-04	ci right 4.818459e-04	k: 170	n:410000
Cons ci ratio: 9.304869e-03	ci left: 3.006971e-01	ci right 3.035105e-01	k: 123862	n:410000
KS ci ratio: 2.997070e-01	ci left: 3.546568e-04	ci right 4.818459e-04	k: 170	n:410000
FUT8   410000 perm   150 sec   (2733 perm/sec)   p_kst 4.146341e-04   p_cons 3.021024e-01   p_joint 4.146341e-04

Joint ci ratio: 2.929318e-01	ci left: 3.638449e-04	ci right 4.908323e-04	k: 178	n:420000
Cons ci ratio: 9.193121e-03	ci left: 3.007282e-01	ci right 3.035079e-01	k: 126889	n:420000
KS ci ratio: 2.929318e-01	ci left: 3.638449e-04	ci right 4.908323e-04	k: 178	n:420000
FUT8   420000 perm   155 sec   (2701 perm/sec)   p_kst 4.238095e-04   p_cons 3.021167e-01   p_joint 4.238095e-04

Joint ci ratio: 2.873658e-01	ci left: 3.704781e-04	ci right 4.968777e-04	k: 185	n:430000
Cons ci ratio: 9.086357e-03	ci left: 3.007092e-01	ci right 3.034563e-01	k: 129895	n:430000
KS ci ratio: 2.873658e-01	ci left: 3.704781e-04	ci right 4.968777e-04	k: 185	n:430000
FUT8   430000 perm   161 sec   (2670 perm/sec)   p_kst 4.302326e-04   p_cons 3.020814e-01   p_joint 4.302326e-04

Joint ci ratio: 2.821056e-01	ci left: 3.768316e-04	ci right 5.026268e-04	k: 192	n:440000
Cons ci ratio: 8.982646e-03	ci left: 3.007185e-01	ci right 3.034341e-01	k: 132913	n:440000
KS ci ratio: 2.821056e-01	ci left: 3.768316e-04	ci right 5.026268e-04	k: 192	n:440000
FUT8   440000 perm   167 sec   (2639 perm/sec)   p_kst 4.363636e-04   p_cons 3.020750e-01   p_joint 4.363636e-04

Joint ci ratio: 2.792270e-01	ci left: 3.767208e-04	ci right 5.009702e-04	k: 196	n:450000
Cons ci ratio: 8.885780e-03	ci left: 3.005677e-01	ci right 3.032526e-01	k: 135859	n:450000
KS ci ratio: 2.792270e-01	ci left: 3.767208e-04	ci right 5.009702e-04	k: 196	n:450000
FUT8   450000 perm   173 sec   (2608 perm/sec)   p_kst 4.355556e-04   p_cons 3.019089e-01   p_joint 4.355556e-04

Joint ci ratio: 2.785220e-01	ci left: 3.705530e-04	ci right 4.924054e-04	k: 197	n:460000
Cons ci ratio: 8.787990e-03	ci left: 3.006148e-01	ci right 3.032703e-01	k: 138893	n:460000
KS ci ratio: 2.785220e-01	ci left: 3.705530e-04	ci right 4.924054e-04	k: 197	n:460000
FUT8   460000 perm   178 sec   (2578 perm/sec)   p_kst 4.282609e-04   p_cons 3.019413e-01   p_joint 4.282609e-04

Joint ci ratio: 2.757507e-01	ci left: 3.705882e-04	ci right 4.910292e-04	k: 201	n:470000
Cons ci ratio: 8.695158e-03	ci left: 3.005728e-01	ci right 3.031998e-01	k: 141886	n:470000
KS ci ratio: 2.757507e-01	ci left: 3.705882e-04	ci right 4.910292e-04	k: 201	n:470000
FUT8   470000 perm   184 sec   (2550 perm/sec)   p_kst 4.276596e-04   p_cons 3.018851e-01   p_joint 4.276596e-04

Joint ci ratio: 2.750716e-01	ci left: 3.648069e-04	ci right 4.830265e-04	k: 202	n:480000
Cons ci ratio: 8.601593e-03	ci left: 3.007096e-01	ci right 3.033094e-01	k: 144964	n:480000
KS ci ratio: 2.750716e-01	ci left: 3.648069e-04	ci right 4.830265e-04	k: 202	n:480000
FUT8   480000 perm   190 sec   (2523 perm/sec)   p_kst 4.208333e-04   p_cons 3.020083e-01   p_joint 4.208333e-04

Joint ci ratio: 2.737271e-01	ci left: 3.611626e-04	ci right 4.775308e-04	k: 204	n:490000
Cons ci ratio: 8.512508e-03	ci left: 3.007656e-01	ci right 3.033388e-01	k: 148005	n:490000
KS ci ratio: 2.737271e-01	ci left: 3.611626e-04	ci right 4.775308e-04	k: 204	n:490000
FUT8   490000 perm   196 sec   (2497 perm/sec)   p_kst 4.163265e-04   p_cons 3.020510e-01   p_joint 4.163265e-04

Joint ci ratio: 2.710951e-01	ci left: 3.613930e-04	ci right 4.765252e-04	k: 208	n:500000
Cons ci ratio: 8.428574e-03	ci left: 3.006976e-01	ci right 3.032447e-01	k: 150985	n:500000
KS ci ratio: 2.710951e-01	ci left: 3.613930e-04	ci right 4.765252e-04	k: 208	n:500000
FUT8   500000 perm   202 sec   (2471 perm/sec)   p_kst 4.160000e-04   p_cons 3.019700e-01   p_joint 4.160000e-04

Joint ci ratio: 2.691705e-01	ci left: 3.597908e-04	ci right 4.734614e-04	k: 211	n:510000
Cons ci ratio: 8.345249e-03	ci left: 3.007244e-01	ci right 3.032465e-01	k: 154012	n:510000
KS ci ratio: 2.691705e-01	ci left: 3.597908e-04	ci right 4.734614e-04	k: 211	n:510000
FUT8   510000 perm   209 sec   (2445 perm/sec)   p_kst 4.137255e-04   p_cons 3.019843e-01   p_joint 4.137255e-04

Joint ci ratio: 2.630368e-01	ci left: 3.708202e-04	ci right 4.848665e-04	k: 221	n:520000
Cons ci ratio: 8.264310e-03	ci left: 3.007523e-01	ci right 3.032500e-01	k: 157040	n:520000
KS ci ratio: 2.630368e-01	ci left: 3.708202e-04	ci right 4.848665e-04	k: 221	n:520000
FUT8   520000 perm   215 sec   (2419 perm/sec)   p_kst 4.250000e-04   p_cons 3.020000e-01   p_joint 4.250000e-04

Joint ci ratio: 2.595523e-01	ci left: 3.744030e-04	ci right 4.877785e-04	k: 227	n:530000
Cons ci ratio: 8.183630e-03	ci left: 3.008847e-01	ci right 3.033590e-01	k: 160124	n:530000
KS ci ratio: 2.595523e-01	ci left: 3.744030e-04	ci right 4.877785e-04	k: 227	n:530000
FUT8   530000 perm   221 sec   (2393 perm/sec)   p_kst 4.283019e-04   p_cons 3.021208e-01   p_joint 4.283019e-04

Joint ci ratio: 2.578617e-01	ci left: 3.726649e-04	ci right 4.846606e-04	k: 230	n:540000
Cons ci ratio: 8.108792e-03	ci left: 3.008292e-01	ci right 3.032803e-01	k: 163109	n:540000
KS ci ratio: 2.578617e-01	ci left: 3.726649e-04	ci right 4.846606e-04	k: 230	n:540000
FUT8   540000 perm   228 sec   (2369 perm/sec)   p_kst 4.259259e-04   p_cons 3.020537e-01   p_joint 4.259259e-04

Joint ci ratio: 2.573061e-01	ci left: 3.675898e-04	ci right 4.777841e-04	k: 231	n:550000
Cons ci ratio: 8.033232e-03	ci left: 3.009193e-01	ci right 3.033482e-01	k: 166173	n:550000
KS ci ratio: 2.573061e-01	ci left: 3.675898e-04	ci right 4.777841e-04	k: 231	n:550000
FUT8   550000 perm   235 sec   (2343 perm/sec)   p_kst 4.200000e-04   p_cons 3.021327e-01   p_joint 4.200000e-04

Joint ci ratio: 2.567541e-01	ci left: 3.626963e-04	ci right 4.711529e-04	k: 232	n:560000
Cons ci ratio: 7.962578e-03	ci left: 3.008565e-01	ci right 3.032634e-01	k: 169153	n:560000
KS ci ratio: 2.567541e-01	ci left: 3.626963e-04	ci right 4.711529e-04	k: 232	n:560000
FUT8   560000 perm   241 sec   (2321 perm/sec)   p_kst 4.142857e-04   p_cons 3.020589e-01   p_joint 4.142857e-04

Joint ci ratio: 2.529814e-01	ci left: 3.678296e-04	ci right 4.759504e-04	k: 239	n:570000
Cons ci ratio: 7.891687e-03	ci left: 3.009064e-01	ci right 3.032921e-01	k: 172196	n:570000
KS ci ratio: 2.529814e-01	ci left: 3.678296e-04	ci right 4.759504e-04	k: 239	n:570000
FUT8   570000 perm   248 sec   (2298 perm/sec)   p_kst 4.192982e-04   p_cons 3.020982e-01   p_joint 4.192982e-04

Joint ci ratio: 2.503865e-01	ci left: 3.695647e-04	ci right 4.769076e-04	k: 244	n:580000
Cons ci ratio: 7.821696e-03	ci left: 3.010063e-01	ci right 3.033716e-01	k: 175269	n:580000
KS ci ratio: 2.503865e-01	ci left: 3.695647e-04	ci right 4.769076e-04	k: 244	n:580000
FUT8   580000 perm   255 sec   (2276 perm/sec)   p_kst 4.206897e-04   p_cons 3.021879e-01   p_joint 4.206897e-04

Joint ci ratio: 2.483673e-01	ci left: 3.696569e-04	ci right 4.760269e-04	k: 248	n:590000
Cons ci ratio: 7.756308e-03	ci left: 3.009522e-01	ci right 3.032972e-01	k: 178253	n:590000
KS ci ratio: 2.483673e-01	ci left: 3.696569e-04	ci right 4.760269e-04	k: 248	n:590000
FUT8   590000 perm   262 sec   (2255 perm/sec)   p_kst 4.203390e-04   p_cons 3.021237e-01   p_joint 4.203390e-04

Joint ci ratio: 2.463961e-01	ci left: 3.697494e-04	ci right 4.751722e-04	k: 252	n:600000
Cons ci ratio: 7.690162e-03	ci left: 3.010299e-01	ci right 3.033554e-01	k: 181315	n:600000
KS ci ratio: 2.463961e-01	ci left: 3.697494e-04	ci right 4.751722e-04	k: 252	n:600000
FUT8   600000 perm   269 sec   (2234 perm/sec)   p_kst 4.200000e-04   p_cons 3.021917e-01   p_joint 4.200000e-04

Joint ci ratio: 2.439967e-01	ci left: 3.713811e-04	ci right 4.760818e-04	k: 257	n:610000
Cons ci ratio: 7.626599e-03	ci left: 3.010543e-01	ci right 3.033607e-01	k: 184346	n:610000
KS ci ratio: 2.439967e-01	ci left: 3.713811e-04	ci right 4.760818e-04	k: 257	n:610000
FUT8   610000 perm   276 sec   (2212 perm/sec)   p_kst 4.213115e-04   p_cons 3.022066e-01   p_joint 4.213115e-04

Joint ci ratio: 2.425906e-01	ci left: 3.699348e-04	ci right 4.735363e-04	k: 260	n:620000
Cons ci ratio: 7.565686e-03	ci left: 3.010168e-01	ci right 3.033044e-01	k: 187339	n:620000
KS ci ratio: 2.425906e-01	ci left: 3.699348e-04	ci right 4.735363e-04	k: 260	n:620000
FUT8   620000 perm   283 sec   (2192 perm/sec)   p_kst 4.193548e-04   p_cons 3.021597e-01   p_joint 4.193548e-04

Joint ci ratio: 2.407528e-01	ci left: 3.700275e-04	ci right 4.727528e-04	k: 264	n:630000
Cons ci ratio: 7.505276e-03	ci left: 3.010329e-01	ci right 3.033023e-01	k: 190365	n:630000
KS ci ratio: 2.407528e-01	ci left: 3.700275e-04	ci right 4.727528e-04	k: 264	n:630000
FUT8   630000 perm   290 sec   (2172 perm/sec)   p_kst 4.190476e-04   p_cons 3.021667e-01   p_joint 4.190476e-04

Joint ci ratio: 2.376342e-01	ci left: 3.745280e-04	ci right 4.769576e-04	k: 271	n:640000
Cons ci ratio: 7.445795e-03	ci left: 3.010766e-01	ci right 3.033283e-01	k: 193409	n:640000
KS ci ratio: 2.376342e-01	ci left: 3.745280e-04	ci right 4.769576e-04	k: 271	n:640000
FUT8   640000 perm   297 sec   (2153 perm/sec)   p_kst 4.234375e-04   p_cons 3.022016e-01   p_joint 4.234375e-04

Joint ci ratio: 2.354796e-01	ci left: 3.760025e-04	ci right 4.777671e-04	k: 276	n:650000
Cons ci ratio: 7.388406e-03	ci left: 3.010791e-01	ci right 3.033134e-01	k: 196427	n:650000
KS ci ratio: 2.354796e-01	ci left: 3.760025e-04	ci right 4.777671e-04	k: 276	n:650000
FUT8   650000 perm   305 sec   (2134 perm/sec)   p_kst 4.246154e-04   p_cons 3.021954e-01   p_joint 4.246154e-04

Joint ci ratio: 2.317441e-01	ci left: 3.831440e-04	ci right 4.849610e-04	k: 285	n:660000
Cons ci ratio: 7.330586e-03	ci left: 3.011815e-01	ci right 3.033990e-01	k: 199511	n:660000
KS ci ratio: 2.317441e-01	ci left: 3.831440e-04	ci right 4.849610e-04	k: 285	n:660000
FUT8   660000 perm   312 sec   (2114 perm/sec)   p_kst 4.318182e-04   p_cons 3.022894e-01   p_joint 4.318182e-04

Joint ci ratio: 2.317448e-01	ci left: 3.774253e-04	ci right 4.777229e-04	k: 285	n:670000
Cons ci ratio: 7.275775e-03	ci left: 3.011840e-01	ci right 3.033848e-01	k: 202530	n:670000
KS ci ratio: 2.317448e-01	ci left: 3.774253e-04	ci right 4.777229e-04	k: 285	n:670000
FUT8   670000 perm   320 sec   (2095 perm/sec)   p_kst 4.253731e-04   p_cons 3.022836e-01   p_joint 4.253731e-04

Joint ci ratio: 2.297451e-01	ci left: 3.788029e-04	ci right 4.784748e-04	k: 290	n:680000
Cons ci ratio: 7.222352e-03	ci left: 3.011762e-01	ci right 3.033607e-01	k: 205542	n:680000
KS ci ratio: 2.297451e-01	ci left: 3.788029e-04	ci right 4.784748e-04	k: 290	n:680000
FUT8   680000 perm   328 sec   (2076 perm/sec)   p_kst 4.264706e-04   p_cons 3.022676e-01   p_joint 4.264706e-04

Joint ci ratio: 2.281823e-01	ci left: 3.787776e-04	ci right 4.776694e-04	k: 294	n:690000
Cons ci ratio: 7.167281e-03	ci left: 3.013338e-01	ci right 3.035027e-01	k: 208668	n:690000
KS ci ratio: 2.281823e-01	ci left: 3.787776e-04	ci right 4.776694e-04	k: 294	n:690000
FUT8   690000 perm   335 sec   (2058 perm/sec)   p_kst 4.260870e-04   p_cons 3.024174e-01   p_joint 4.260870e-04

Joint ci ratio: 2.266509e-01	ci left: 3.787553e-04	ci right 4.768848e-04	k: 298	n:700000
Cons ci ratio: 7.115617e-03	ci left: 3.013584e-01	ci right 3.035118e-01	k: 211704	n:700000
KS ci ratio: 2.266509e-01	ci left: 3.787553e-04	ci right 4.768848e-04	k: 298	n:700000
FUT8   700000 perm   343 sec   (2039 perm/sec)   p_kst 4.257143e-04   p_cons 3.024343e-01   p_joint 4.257143e-04

Joint ci ratio: 2.251499e-01	ci left: 3.787357e-04	ci right 4.761202e-04	k: 302	n:710000
Cons ci ratio: 7.064654e-03	ci left: 3.014063e-01	ci right 3.035446e-01	k: 214757	n:710000
KS ci ratio: 2.251499e-01	ci left: 3.787357e-04	ci right 4.761202e-04	k: 302	n:710000
FUT8   710000 perm   351 sec   (2021 perm/sec)   p_kst 4.253521e-04   p_cons 3.024746e-01   p_joint 4.253521e-04

Joint ci ratio: 2.225929e-01	ci left: 3.826526e-04	ci right 4.797738e-04	k: 309	n:720000
Cons ci ratio: 7.015163e-03	ci left: 3.014294e-01	ci right 3.035528e-01	k: 217793	n:720000
KS ci ratio: 2.225929e-01	ci left: 3.826526e-04	ci right 4.797738e-04	k: 309	n:720000
FUT8   720000 perm   359 sec   (2004 perm/sec)   p_kst 4.291667e-04   p_cons 3.024903e-01   p_joint 4.291667e-04

Joint ci ratio: 2.201212e-01	ci left: 3.864683e-04	ci right 4.833213e-04	k: 316	n:730000
Cons ci ratio: 6.965951e-03	ci left: 3.014970e-01	ci right 3.036059e-01	k: 220862	n:730000
KS ci ratio: 2.201212e-01	ci left: 3.864683e-04	ci right 4.833213e-04	k: 316	n:730000
FUT8   730000 perm   367 sec   (1987 perm/sec)   p_kst 4.328767e-04   p_cons 3.025507e-01   p_joint 4.328767e-04

Joint ci ratio: 2.187455e-01	ci left: 3.863541e-04	ci right 4.824920e-04	k: 320	n:740000
Cons ci ratio: 6.917827e-03	ci left: 3.015588e-01	ci right 3.036535e-01	k: 223928	n:740000
KS ci ratio: 2.187455e-01	ci left: 3.863541e-04	ci right 4.824920e-04	k: 320	n:740000
FUT8   740000 perm   375 sec   (1971 perm/sec)   p_kst 4.324324e-04   p_cons 3.026054e-01   p_joint 4.324324e-04

Joint ci ratio: 2.167291e-01	ci left: 3.887665e-04	ci right 4.844943e-04	k: 326	n:750000
Cons ci ratio: 6.871512e-03	ci left: 3.015684e-01	ci right 3.036491e-01	k: 226956	n:750000
KS ci ratio: 2.167291e-01	ci left: 3.887665e-04	ci right 4.844943e-04	k: 326	n:750000
FUT8   750000 perm   384 sec   (1955 perm/sec)   p_kst 4.346667e-04   p_cons 3.026080e-01   p_joint 4.346667e-04

Joint ci ratio: 2.157419e-01	ci left: 3.873847e-04	ci right 4.822802e-04	k: 329	n:760000
Cons ci ratio: 6.826348e-03	ci left: 3.015634e-01	ci right 3.036303e-01	k: 229973	n:760000
KS ci ratio: 2.157419e-01	ci left: 3.873847e-04	ci right 4.822802e-04	k: 329	n:760000
FUT8   760000 perm   392 sec   (1939 perm/sec)   p_kst 4.328947e-04   p_cons 3.025961e-01   p_joint 4.328947e-04

Joint ci ratio: 2.128582e-01	ci left: 3.934149e-04	ci right 4.883313e-04	k: 338	n:770000
Cons ci ratio: 6.782481e-03	ci left: 3.015325e-01	ci right 3.035859e-01	k: 232970	n:770000
KS ci ratio: 2.128582e-01	ci left: 3.934149e-04	ci right 4.883313e-04	k: 338	n:770000
FUT8   770000 perm   401 sec   (1923 perm/sec)   p_kst 4.389610e-04   p_cons 3.025584e-01   p_joint 4.389610e-04

Joint ci ratio: 2.119227e-01	ci left: 3.920127e-04	ci right 4.861211e-04	k: 341	n:780000
Cons ci ratio: 6.739510e-03	ci left: 3.014986e-01	ci right 3.035387e-01	k: 235964	n:780000
KS ci ratio: 2.119227e-01	ci left: 3.920127e-04	ci right 4.861211e-04	k: 341	n:780000
FUT8   780000 perm   409 sec   (1908 perm/sec)   p_kst 4.371795e-04   p_cons 3.025179e-01   p_joint 4.371795e-04

Joint ci ratio: 2.113061e-01	ci left: 3.894480e-04	ci right 4.826334e-04	k: 343	n:790000
Cons ci ratio: 6.697206e-03	ci left: 3.014745e-01	ci right 3.035016e-01	k: 238965	n:790000
KS ci ratio: 2.113061e-01	ci left: 3.894480e-04	ci right 4.826334e-04	k: 343	n:790000
FUT8   790000 perm   417 sec   (1892 perm/sec)   p_kst 4.341772e-04   p_cons 3.024873e-01   p_joint 4.341772e-04

Joint ci ratio: 2.100882e-01	ci left: 3.893160e-04	ci right 4.818639e-04	k: 347	n:800000
Cons ci ratio: 6.656515e-03	ci left: 3.013986e-01	ci right 3.034128e-01	k: 241924	n:800000
KS ci ratio: 2.100882e-01	ci left: 3.893160e-04	ci right 4.818639e-04	k: 347	n:800000
FUT8   800000 perm   426 sec   (1877 perm/sec)   p_kst 4.337500e-04   p_cons 3.024050e-01   p_joint 4.337500e-04

Joint ci ratio: 2.088912e-01	ci left: 3.891889e-04	ci right 4.811119e-04	k: 351	n:810000
Cons ci ratio: 6.617313e-03	ci left: 3.012765e-01	ci right 3.032780e-01	k: 244844	n:810000
KS ci ratio: 2.088912e-01	ci left: 3.891889e-04	ci right 4.811119e-04	k: 351	n:810000
FUT8   810000 perm   435 sec   (1862 perm/sec)   p_kst 4.333333e-04   p_cons 3.022765e-01   p_joint 4.333333e-04

Joint ci ratio: 2.068443e-01	ci left: 3.925350e-04	ci right 4.842249e-04	k: 358	n:820000
Cons ci ratio: 6.577768e-03	ci left: 3.012232e-01	ci right 3.032123e-01	k: 247818	n:820000
KS ci ratio: 2.068443e-01	ci left: 3.925350e-04	ci right 4.842249e-04	k: 358	n:820000
FUT8   820000 perm   444 sec   (1848 perm/sec)   p_kst 4.365854e-04   p_cons 3.022171e-01   p_joint 4.365854e-04

Joint ci ratio: 2.059856e-01	ci left: 3.912332e-04	ci right 4.821920e-04	k: 361	n:830000
Cons ci ratio: 6.539240e-03	ci left: 3.011508e-01	ci right 3.031277e-01	k: 250775	n:830000
KS ci ratio: 2.059856e-01	ci left: 3.912332e-04	ci right 4.821920e-04	k: 361	n:830000
FUT8   830000 perm   453 sec   (1834 perm/sec)   p_kst 4.349398e-04   p_cons 3.021386e-01   p_joint 4.349398e-04

Joint ci ratio: 2.037461e-01	ci left: 3.956111e-04	ci right 4.864632e-04	k: 369	n:840000
Cons ci ratio: 6.500555e-03	ci left: 3.011336e-01	ci right 3.030987e-01	k: 253777	n:840000
KS ci ratio: 2.037461e-01	ci left: 3.956111e-04	ci right 4.864632e-04	k: 369	n:840000
FUT8   840000 perm   462 sec   (1820 perm/sec)   p_kst 4.392857e-04   p_cons 3.021155e-01   p_joint 4.392857e-04

Joint ci ratio: 2.015781e-01	ci left: 3.998911e-04	ci right 4.906287e-04	k: 377	n:850000
Cons ci ratio: 6.461395e-03	ci left: 3.011921e-01	ci right 3.031457e-01	k: 256843	n:850000
KS ci ratio: 2.015781e-01	ci left: 3.998911e-04	ci right 4.906287e-04	k: 377	n:850000
FUT8   850000 perm   471 sec   (1806 perm/sec)   p_kst 4.435294e-04   p_cons 3.021682e-01   p_joint 4.435294e-04

Joint ci ratio: 1.999969e-01	ci left: 4.018672e-04	ci right 4.922507e-04	k: 383	n:860000
Cons ci ratio: 6.424795e-03	ci left: 3.011273e-01	ci right 3.030694e-01	k: 259804	n:860000
KS ci ratio: 1.999969e-01	ci left: 4.018672e-04	ci right 4.922507e-04	k: 383	n:860000
FUT8   860000 perm   480 sec   (1792 perm/sec)   p_kst 4.453488e-04   p_cons 3.020977e-01   p_joint 4.453488e-04

Joint ci ratio: 1.992204e-01	ci left: 4.005240e-04	ci right 4.902130e-04	k: 386	n:870000
Cons ci ratio: 6.388791e-03	ci left: 3.010652e-01	ci right 3.029959e-01	k: 262766	n:870000
KS ci ratio: 1.992204e-01	ci left: 4.005240e-04	ci right 4.902130e-04	k: 386	n:870000
FUT8   870000 perm   489 sec   (1778 perm/sec)   p_kst 4.436782e-04   p_cons 3.020299e-01   p_joint 4.436782e-04

Joint ci ratio: 1.981988e-01	ci left: 4.002919e-04	ci right 4.894138e-04	k: 390	n:880000
Cons ci ratio: 6.351588e-03	ci left: 3.011237e-01	ci right 3.030435e-01	k: 265833	n:880000
KS ci ratio: 1.981988e-01	ci left: 4.002919e-04	ci right 4.894138e-04	k: 390	n:880000
FUT8   880000 perm   499 sec   (1764 perm/sec)   p_kst 4.431818e-04   p_cons 3.020830e-01   p_joint 4.431818e-04

Joint ci ratio: 1.974429e-01	ci left: 3.989980e-04	ci right 4.874523e-04	k: 393	n:890000
Cons ci ratio: 6.315953e-03	ci left: 3.011192e-01	ci right 3.030282e-01	k: 268845	n:890000
KS ci ratio: 1.974429e-01	ci left: 3.989980e-04	ci right 4.874523e-04	k: 393	n:890000
FUT8   890000 perm   508 sec   (1751 perm/sec)   p_kst 4.415730e-04   p_cons 3.020730e-01   p_joint 4.415730e-04

Joint ci ratio: 1.966957e-01	ci left: 3.977336e-04	ci right 4.855338e-04	k: 396	n:900000
Cons ci ratio: 6.280580e-03	ci left: 3.011370e-01	ci right 3.030354e-01	k: 271877	n:900000
KS ci ratio: 1.966957e-01	ci left: 3.977336e-04	ci right 4.855338e-04	k: 396	n:900000
FUT8   900000 perm   518 sec   (1737 perm/sec)   p_kst 4.400000e-04   p_cons 3.020856e-01   p_joint 4.400000e-04

Joint ci ratio: 1.957122e-01	ci left: 3.975425e-04	ci right 4.848095e-04	k: 400	n:910000
Cons ci ratio: 6.244916e-03	ci left: 3.012138e-01	ci right 3.031018e-01	k: 274963	n:910000
KS ci ratio: 1.957122e-01	ci left: 3.975425e-04	ci right 4.848095e-04	k: 400	n:910000
FUT8   910000 perm   528 sec   (1725 perm/sec)   p_kst 4.395604e-04   p_cons 3.021571e-01   p_joint 4.395604e-04

Joint ci ratio: 1.947434e-01	ci left: 3.973567e-04	ci right 4.840999e-04	k: 404	n:920000
Cons ci ratio: 6.210316e-03	ci left: 3.012574e-01	ci right 3.031352e-01	k: 278020	n:920000
KS ci ratio: 1.947434e-01	ci left: 3.973567e-04	ci right 4.840999e-04	k: 404	n:920000
FUT8   920000 perm   537 sec   (1713 perm/sec)   p_kst 4.391304e-04   p_cons 3.021957e-01   p_joint 4.391304e-04

Joint ci ratio: 1.933165e-01	ci left: 3.992223e-04	ci right 4.856591e-04	k: 410	n:930000
Cons ci ratio: 6.176585e-03	ci left: 3.012797e-01	ci right 3.031474e-01	k: 281058	n:930000
KS ci ratio: 1.933165e-01	ci left: 3.992223e-04	ci right 4.856591e-04	k: 410	n:930000
FUT8   930000 perm   547 sec   (1700 perm/sec)   p_kst 4.408602e-04   p_cons 3.022129e-01   p_joint 4.408602e-04

Joint ci ratio: 1.923826e-01	ci left: 3.990251e-04	ci right 4.849531e-04	k: 414	n:940000
Cons ci ratio: 6.142948e-03	ci left: 3.013323e-01	ci right 3.031901e-01	k: 284125	n:940000
KS ci ratio: 1.923826e-01	ci left: 3.990251e-04	ci right 4.849531e-04	k: 414	n:940000
FUT8   940000 perm   557 sec   (1688 perm/sec)   p_kst 4.404255e-04   p_cons 3.022606e-01   p_joint 4.404255e-04

Joint ci ratio: 1.910067e-01	ci left: 4.008376e-04	ci right 4.864668e-04	k: 420	n:950000
Cons ci ratio: 6.109961e-03	ci left: 3.013766e-01	ci right 3.032246e-01	k: 287185	n:950000
KS ci ratio: 1.910067e-01	ci left: 4.008376e-04	ci right 4.864668e-04	k: 420	n:950000
FUT8   950000 perm   567 sec   (1675 perm/sec)   p_kst 4.421053e-04   p_cons 3.023000e-01   p_joint 4.421053e-04

Joint ci ratio: 1.905548e-01	ci left: 3.986460e-04	ci right 4.835822e-04	k: 422	n:960000
Cons ci ratio: 6.078851e-03	ci left: 3.013262e-01	ci right 3.031645e-01	k: 290155	n:960000
KS ci ratio: 1.905548e-01	ci left: 3.986460e-04	ci right 4.835822e-04	k: 422	n:960000
FUT8   960000 perm   577 sec   (1664 perm/sec)   p_kst 4.395833e-04   p_cons 3.022448e-01   p_joint 4.395833e-04

Joint ci ratio: 1.896602e-01	ci left: 3.984637e-04	ci right 4.829166e-04	k: 426	n:970000
Cons ci ratio: 6.047117e-03	ci left: 3.013532e-01	ci right 3.031820e-01	k: 293199	n:970000
KS ci ratio: 1.896602e-01	ci left: 3.984637e-04	ci right 4.829166e-04	k: 426	n:970000
FUT8   970000 perm   587 sec   (1652 perm/sec)   p_kst 4.391753e-04   p_cons 3.022670e-01   p_joint 4.391753e-04

Joint ci ratio: 1.889976e-01	ci left: 3.973139e-04	ci right 4.811950e-04	k: 429	n:980000
Cons ci ratio: 6.016297e-03	ci left: 3.013500e-01	ci right 3.031695e-01	k: 296214	n:980000
KS ci ratio: 1.889976e-01	ci left: 3.973139e-04	ci right 4.811950e-04	k: 429	n:980000
FUT8   980000 perm   597 sec   (1640 perm/sec)   p_kst 4.377551e-04   p_cons 3.022592e-01   p_joint 4.377551e-04

Joint ci ratio: 1.876925e-01	ci left: 3.990755e-04	ci right 4.826805e-04	k: 435	n:990000
Cons ci ratio: 5.984797e-03	ci left: 3.014277e-01	ci right 3.032381e-01	k: 299309	n:990000
KS ci ratio: 1.876925e-01	ci left: 3.990755e-04	ci right 4.826805e-04	k: 435	n:990000
FUT8   990000 perm   608 sec   (1630 perm/sec)   p_kst 4.393939e-04   p_cons 3.023323e-01   p_joint 4.393939e-04

Joint ci ratio: 1.866254e-01	ci left: 3.998505e-04	ci right 4.830876e-04	k: 440	n:1000000
Cons ci ratio: 5.954704e-03	ci left: 3.014389e-01	ci right 3.032402e-01	k: 302339	n:1000000
KS ci ratio: 1.866254e-01	ci left: 3.998505e-04	ci right 4.830876e-04	k: 440	n:1000000
FUT8   1000000 perm   618 sec   (1618 perm/sec)   p_kst 4.400000e-04   p_cons 3.023390e-01   p_joint 4.400000e-04

Joint ci ratio: 1.864145e-01	ci left: 3.968354e-04	ci right 4.793410e-04	k: 441	n:1010000
Cons ci ratio: 5.925046e-03	ci left: 3.014509e-01	ci right 3.032433e-01	k: 305370	n:1010000
KS ci ratio: 1.864145e-01	ci left: 3.968354e-04	ci right 4.793410e-04	k: 441	n:1010000
FUT8   1010000 perm   628 sec   (1607 perm/sec)   p_kst 4.366337e-04   p_cons 3.023465e-01   p_joint 4.366337e-04

Joint ci ratio: 1.855767e-01	ci left: 3.966838e-04	ci right 4.787455e-04	k: 445	n:1020000
Cons ci ratio: 5.895402e-03	ci left: 3.014931e-01	ci right 3.032767e-01	k: 308432	n:1020000
KS ci ratio: 1.855767e-01	ci left: 3.966838e-04	ci right 4.787455e-04	k: 445	n:1020000
FUT8   1020000 perm   639 sec   (1597 perm/sec)   p_kst 4.362745e-04   p_cons 3.023843e-01   p_joint 4.362745e-04

Joint ci ratio: 1.847501e-01	ci left: 3.965360e-04	ci right 4.781608e-04	k: 449	n:1030000
Cons ci ratio: 5.866847e-03	ci left: 3.014878e-01	ci right 3.032628e-01	k: 311446	n:1030000
KS ci ratio: 1.847501e-01	ci left: 3.965360e-04	ci right 4.781608e-04	k: 449	n:1030000
FUT8   1030000 perm   649 sec   (1586 perm/sec)   p_kst 4.359223e-04   p_cons 3.023748e-01   p_joint 4.359223e-04

Joint ci ratio: 1.841375e-01	ci left: 3.954746e-04	ci right 4.765808e-04	k: 452	n:1040000
Cons ci ratio: 5.838490e-03	ci left: 3.014981e-01	ci right 3.032645e-01	k: 314476	n:1040000
KS ci ratio: 1.841375e-01	ci left: 3.954746e-04	ci right 4.765808e-04	k: 452	n:1040000
FUT8   1040000 perm   660 sec   (1575 perm/sec)   p_kst 4.346154e-04   p_cons 3.023808e-01   p_joint 4.346154e-04

Joint ci ratio: 1.833299e-01	ci left: 3.953424e-04	ci right 4.760264e-04	k: 456	n:1050000
Cons ci ratio: 5.811432e-03	ci left: 3.014435e-01	ci right 3.032014e-01	k: 317438	n:1050000
KS ci ratio: 1.833299e-01	ci left: 3.953424e-04	ci right 4.760264e-04	k: 456	n:1050000
FUT8   1050000 perm   671 sec   (1565 perm/sec)   p_kst 4.342857e-04   p_cons 3.023219e-01   p_joint 4.342857e-04

Joint ci ratio: 1.821380e-01	ci left: 3.970143e-04	ci right 4.774546e-04	k: 462	n:1060000
Cons ci ratio: 5.783181e-03	ci left: 3.015040e-01	ci right 3.032537e-01	k: 320521	n:1060000
KS ci ratio: 1.821380e-01	ci left: 3.970143e-04	ci right 4.774546e-04	k: 462	n:1060000
FUT8   1060000 perm   682 sec   (1555 perm/sec)   p_kst 4.358491e-04   p_cons 3.023783e-01   p_joint 4.358491e-04

Joint ci ratio: 1.813563e-01	ci left: 3.968721e-04	ci right 4.769006e-04	k: 466	n:1070000
Cons ci ratio: 5.756027e-03	ci left: 3.015130e-01	ci right 3.032544e-01	k: 323550	n:1070000
KS ci ratio: 1.813563e-01	ci left: 3.968721e-04	ci right 4.769006e-04	k: 466	n:1070000
FUT8   1070000 perm   693 sec   (1545 perm/sec)   p_kst 4.355140e-04   p_cons 3.023832e-01   p_joint 4.355140e-04

Joint ci ratio: 1.811627e-01	ci left: 3.940812e-04	ci right 4.734528e-04	k: 467	n:1080000
Cons ci ratio: 5.729290e-03	ci left: 3.015190e-01	ci right 3.032524e-01	k: 326576	n:1080000
KS ci ratio: 1.811627e-01	ci left: 3.940812e-04	ci right 4.734528e-04	k: 467	n:1080000
FUT8   1080000 perm   704 sec   (1535 perm/sec)   p_kst 4.324074e-04   p_cons 3.023852e-01   p_joint 4.324074e-04

Joint ci ratio: 1.805850e-01	ci left: 3.930935e-04	ci right 4.719860e-04	k: 470	n:1090000
Cons ci ratio: 5.703033e-03	ci left: 3.015167e-01	ci right 3.032421e-01	k: 329593	n:1090000
KS ci ratio: 1.805850e-01	ci left: 3.930935e-04	ci right 4.719860e-04	k: 470	n:1090000
FUT8   1090000 perm   715 sec   (1525 perm/sec)   p_kst 4.311927e-04   p_cons 3.023789e-01   p_joint 4.311927e-04

Joint ci ratio: 1.792576e-01	ci left: 3.955970e-04	ci right 4.743451e-04	k: 477	n:1100000
Cons ci ratio: 5.677000e-03	ci left: 3.015245e-01	ci right 3.032420e-01	k: 332621	n:1100000
KS ci ratio: 1.792576e-01	ci left: 3.955970e-04	ci right 4.743451e-04	k: 477	n:1100000
FUT8   1100000 perm   726 sec   (1515 perm/sec)   p_kst 4.336364e-04   p_cons 3.023827e-01   p_joint 4.336364e-04

Joint ci ratio: 1.783273e-01	ci left: 3.963360e-04	ci right 4.747776e-04	k: 482	n:1110000
Cons ci ratio: 5.651380e-03	ci left: 3.015276e-01	ci right 3.032374e-01	k: 335644	n:1110000
KS ci ratio: 1.783273e-01	ci left: 3.963360e-04	ci right 4.747776e-04	k: 482	n:1110000
FUT8   1110000 perm   737 sec   (1506 perm/sec)   p_kst 4.342342e-04   p_cons 3.023820e-01   p_joint 4.342342e-04

Joint ci ratio: 1.777761e-01	ci left: 3.953565e-04	ci right 4.733364e-04	k: 485	n:1120000
Cons ci ratio: 5.625937e-03	ci left: 3.015432e-01	ci right 3.032453e-01	k: 338681	n:1120000
KS ci ratio: 1.777761e-01	ci left: 3.953565e-04	ci right 4.733364e-04	k: 485	n:1120000
FUT8   1120000 perm   748 sec   (1497 perm/sec)   p_kst 4.330357e-04   p_cons 3.023938e-01   p_joint 4.330357e-04

Joint ci ratio: 1.766887e-01	ci left: 3.969319e-04	ci right 4.746926e-04	k: 491	n:1130000
Cons ci ratio: 5.601411e-03	ci left: 3.015152e-01	ci right 3.032097e-01	k: 341669	n:1130000
KS ci ratio: 1.766887e-01	ci left: 3.969319e-04	ci right 4.746926e-04	k: 491	n:1130000
FUT8   1130000 perm   760 sec   (1487 perm/sec)   p_kst 4.345133e-04   p_cons 3.023619e-01   p_joint 4.345133e-04

Joint ci ratio: 1.759748e-01	ci left: 3.968040e-04	ci right 4.741921e-04	k: 495	n:1140000
Cons ci ratio: 5.575846e-03	ci left: 3.015903e-01	ci right 3.032774e-01	k: 344774	n:1140000
KS ci ratio: 1.759748e-01	ci left: 3.968040e-04	ci right 4.741921e-04	k: 495	n:1140000
FUT8   1140000 perm   771 sec   (1478 perm/sec)   p_kst 4.342105e-04   p_cons 3.024333e-01   p_joint 4.342105e-04

Joint ci ratio: 1.756213e-01	ci left: 3.950161e-04	ci right 4.718843e-04	k: 497	n:1150000
Cons ci ratio: 5.551680e-03	ci left: 3.015841e-01	ci right 3.032639e-01	k: 347787	n:1150000
KS ci ratio: 1.756213e-01	ci left: 3.950161e-04	ci right 4.718843e-04	k: 497	n:1150000
FUT8   1150000 perm   783 sec   (1469 perm/sec)   p_kst 4.321739e-04   p_cons 3.024235e-01   p_joint 4.321739e-04

Joint ci ratio: 1.745727e-01	ci left: 3.965566e-04	ci right 4.732151e-04	k: 503	n:1160000
Cons ci ratio: 5.527306e-03	ci left: 3.016176e-01	ci right 3.032902e-01	k: 350846	n:1160000
KS ci ratio: 1.745727e-01	ci left: 3.965566e-04	ci right 4.732151e-04	k: 503	n:1160000
FUT8   1160000 perm   794 sec   (1460 perm/sec)   p_kst 4.336207e-04   p_cons 3.024534e-01   p_joint 4.336207e-04

Joint ci ratio: 1.740555e-01	ci left: 3.956194e-04	ci right 4.718465e-04	k: 506	n:1170000
Cons ci ratio: 5.504231e-03	ci left: 3.015755e-01	ci right 3.032409e-01	k: 353817	n:1170000
KS ci ratio: 1.740555e-01	ci left: 3.956194e-04	ci right 4.718465e-04	k: 506	n:1170000
FUT8   1170000 perm   806 sec   (1452 perm/sec)   p_kst 4.324786e-04   p_cons 3.024077e-01   p_joint 4.324786e-04

Joint ci ratio: 1.735429e-01	ci left: 3.946985e-04	ci right 4.705006e-04	k: 509	n:1180000
Cons ci ratio: 5.480353e-03	ci left: 3.016179e-01	ci right 3.032763e-01	k: 356887	n:1180000
KS ci ratio: 1.735429e-01	ci left: 3.946985e-04	ci right 4.705006e-04	k: 509	n:1180000
FUT8   1180000 perm   817 sec   (1443 perm/sec)   p_kst 4.313559e-04   p_cons 3.024466e-01   p_joint 4.313559e-04

Joint ci ratio: 1.726984e-01	ci left: 3.954013e-04	ci right 4.709304e-04	k: 514	n:1190000
Cons ci ratio: 5.457500e-03	ci left: 3.016042e-01	ci right 3.032556e-01	k: 359891	n:1190000
KS ci ratio: 1.726984e-01	ci left: 3.954013e-04	ci right 4.709304e-04	k: 514	n:1190000
FUT8   1190000 perm   829 sec   (1435 perm/sec)   p_kst 4.319328e-04   p_cons 3.024294e-01   p_joint 4.319328e-04

Joint ci ratio: 1.721977e-01	ci left: 3.944984e-04	ci right 4.696138e-04	k: 517	n:1200000
Cons ci ratio: 5.434244e-03	ci left: 3.016441e-01	ci right 3.032885e-01	k: 362959	n:1200000
KS ci ratio: 1.721977e-01	ci left: 3.944984e-04	ci right 4.696138e-04	k: 517	n:1200000
FUT8   1200000 perm   842 sec   (1426 perm/sec)   p_kst 4.308333e-04   p_cons 3.024658e-01   p_joint 4.308333e-04

Joint ci ratio: 1.707206e-01	ci left: 3.983570e-04	ci right 4.734895e-04	k: 526	n:1210000
Cons ci ratio: 5.412194e-03	ci left: 3.016122e-01	ci right 3.032499e-01	k: 365941	n:1210000
KS ci ratio: 1.707206e-01	ci left: 3.983570e-04	ci right 4.734895e-04	k: 526	n:1210000
FUT8   1210000 perm   854 sec   (1417 perm/sec)   p_kst 4.347107e-04   p_cons 3.024306e-01   p_joint 4.347107e-04

Joint ci ratio: 1.699164e-01	ci left: 3.990154e-04	ci right 4.738813e-04	k: 531	n:1220000
Cons ci ratio: 5.390484e-03	ci left: 3.015752e-01	ci right 3.032060e-01	k: 368916	n:1220000
KS ci ratio: 1.699164e-01	ci left: 3.990154e-04	ci right 4.738813e-04	k: 531	n:1220000
FUT8   1220000 perm   866 sec   (1409 perm/sec)   p_kst 4.352459e-04   p_cons 3.023902e-01   p_joint 4.352459e-04

Joint ci ratio: 1.691235e-01	ci left: 3.996640e-04	ci right 4.742660e-04	k: 536	n:1230000
Cons ci ratio: 5.368702e-03	ci left: 3.015648e-01	ci right 3.031890e-01	k: 371923	n:1230000
KS ci ratio: 1.691235e-01	ci left: 3.996640e-04	ci right 4.742660e-04	k: 536	n:1230000
FUT8   1230000 perm   878 sec   (1400 perm/sec)   p_kst 4.357724e-04   p_cons 3.023764e-01   p_joint 4.357724e-04

Joint ci ratio: 1.686531e-01	ci left: 3.987580e-04	ci right 4.729628e-04	k: 539	n:1240000
Cons ci ratio: 5.346854e-03	ci left: 3.015804e-01	ci right 3.031980e-01	k: 374962	n:1240000
KS ci ratio: 1.686531e-01	ci left: 3.987580e-04	ci right 4.729628e-04	k: 539	n:1240000
FUT8   1240000 perm   891 sec   (1392 perm/sec)   p_kst 4.346774e-04   p_cons 3.023887e-01   p_joint 4.346774e-04

Joint ci ratio: 1.677238e-01	ci left: 4.001659e-04	ci right 4.741809e-04	k: 545	n:1250000
Cons ci ratio: 5.325110e-03	ci left: 3.016085e-01	ci right 3.032196e-01	k: 378017	n:1250000
KS ci ratio: 1.677238e-01	ci left: 4.001659e-04	ci right 4.741809e-04	k: 545	n:1250000
FUT8   1250000 perm   903 sec   (1384 perm/sec)   p_kst 4.360000e-04   p_cons 3.024136e-01   p_joint 4.360000e-04

Joint ci ratio: 1.668097e-01	ci left: 4.015525e-04	ci right 4.753786e-04	k: 551	n:1260000
Cons ci ratio: 5.303908e-03	ci left: 3.016140e-01	ci right 3.032187e-01	k: 381044	n:1260000
KS ci ratio: 1.668097e-01	ci left: 4.015525e-04	ci right 4.753786e-04	k: 551	n:1260000
FUT8   1260000 perm   916 sec   (1375 perm/sec)   p_kst 4.373016e-04   p_cons 3.024159e-01   p_joint 4.373016e-04

Joint ci ratio: 1.662086e-01	ci left: 4.014091e-04	ci right 4.749162e-04	k: 555	n:1270000
Cons ci ratio: 5.282642e-03	ci left: 3.016445e-01	ci right 3.032430e-01	k: 384103	n:1270000
KS ci ratio: 1.662086e-01	ci left: 4.014091e-04	ci right 4.749162e-04	k: 555	n:1270000
FUT8   1270000 perm   929 sec   (1368 perm/sec)   p_kst 4.370079e-04   p_cons 3.024433e-01   p_joint 4.370079e-04

Joint ci ratio: 1.651719e-01	ci left: 4.035151e-04	ci right 4.769012e-04	k: 562	n:1280000
Cons ci ratio: 5.262097e-03	ci left: 3.016372e-01	ci right 3.032294e-01	k: 387114	n:1280000
KS ci ratio: 1.651719e-01	ci left: 4.035151e-04	ci right 4.769012e-04	k: 562	n:1280000
FUT8   1280000 perm   941 sec   (1360 perm/sec)   p_kst 4.390625e-04   p_cons 3.024328e-01   p_joint 4.390625e-04

Joint ci ratio: 1.642986e-01	ci left: 4.048465e-04	ci right 4.780470e-04	k: 568	n:1290000
Cons ci ratio: 5.241992e-03	ci left: 3.016137e-01	ci right 3.031996e-01	k: 390104	n:1290000
KS ci ratio: 1.642986e-01	ci left: 4.048465e-04	ci right 4.780470e-04	k: 568	n:1290000
FUT8   1290000 perm   954 sec   (1352 perm/sec)   p_kst 4.403101e-04   p_cons 3.024062e-01   p_joint 4.403101e-04

Joint ci ratio: 1.634391e-01	ci left: 4.061584e-04	ci right 4.791742e-04	k: 574	n:1300000
Cons ci ratio: 5.221078e-03	ci left: 3.016743e-01	ci right 3.032543e-01	k: 393203	n:1300000
KS ci ratio: 1.634391e-01	ci left: 4.061584e-04	ci right 4.791742e-04	k: 574	n:1300000
FUT8   1300000 perm   967 sec   (1344 perm/sec)   p_kst 4.415385e-04   p_cons 3.024638e-01   p_joint 4.415385e-04

Joint ci ratio: 1.630145e-01	ci left: 4.052545e-04	ci right 4.778999e-04	k: 577	n:1310000
Cons ci ratio: 5.201354e-03	ci left: 3.016578e-01	ci right 3.032316e-01	k: 396202	n:1310000
KS ci ratio: 1.630145e-01	ci left: 4.052545e-04	ci right 4.778999e-04	k: 577	n:1310000
FUT8   1310000 perm   980 sec   (1336 perm/sec)   p_kst 4.404580e-04   p_cons 3.024443e-01   p_joint 4.404580e-04

Joint ci ratio: 1.620361e-01	ci left: 4.072718e-04	ci right 4.797980e-04	k: 584	n:1320000
Cons ci ratio: 5.181618e-03	ci left: 3.016604e-01	ci right 3.032283e-01	k: 399226	n:1320000
KS ci ratio: 1.620361e-01	ci left: 4.072718e-04	ci right 4.797980e-04	k: 584	n:1320000
FUT8   1320000 perm   994 sec   (1329 perm/sec)   p_kst 4.424242e-04   p_cons 3.024439e-01   p_joint 4.424242e-04

Joint ci ratio: 1.610751e-01	ci left: 4.092600e-04	ci right 4.816662e-04	k: 591	n:1330000
Cons ci ratio: 5.161628e-03	ci left: 3.017021e-01	ci right 3.032642e-01	k: 402302	n:1330000
KS ci ratio: 1.610751e-01	ci left: 4.092600e-04	ci right 4.816662e-04	k: 591	n:1330000
FUT8   1330000 perm   1007 sec   (1321 perm/sec)   p_kst 4.443609e-04   p_cons 3.024827e-01   p_joint 4.443609e-04

Joint ci ratio: 1.608038e-01	ci left: 4.076382e-04	ci right 4.796243e-04	k: 593	n:1340000
Cons ci ratio: 5.142621e-03	ci left: 3.016813e-01	ci right 3.032375e-01	k: 405295	n:1340000
KS ci ratio: 1.608038e-01	ci left: 4.076382e-04	ci right 4.796243e-04	k: 593	n:1340000
FUT8   1340000 perm   1020 sec   (1313 perm/sec)   p_kst 4.425373e-04   p_cons 3.024590e-01   p_joint 4.425373e-04

Joint ci ratio: 1.602652e-01	ci left: 4.074626e-04	ci right 4.791534e-04	k: 597	n:1350000
Cons ci ratio: 5.123913e-03	ci left: 3.016534e-01	ci right 3.032037e-01	k: 408278	n:1350000
KS ci ratio: 1.602652e-01	ci left: 4.074626e-04	ci right 4.791534e-04	k: 597	n:1350000
FUT8   1350000 perm   1034 sec   (1306 perm/sec)   p_kst 4.422222e-04   p_cons 3.024281e-01   p_joint 4.422222e-04

Joint ci ratio: 1.595993e-01	ci left: 4.079959e-04	ci right 4.794537e-04	k: 602	n:1360000
Cons ci ratio: 5.105319e-03	ci left: 3.016333e-01	ci right 3.031779e-01	k: 411271	n:1360000
KS ci ratio: 1.595993e-01	ci left: 4.079959e-04	ci right 4.794537e-04	k: 602	n:1360000
FUT8   1360000 perm   1047 sec   (1299 perm/sec)   p_kst 4.426471e-04   p_cons 3.024051e-01   p_joint 4.426471e-04

Joint ci ratio: 1.589417e-01	ci left: 4.085220e-04	ci right 4.797490e-04	k: 607	n:1370000
Cons ci ratio: 5.086248e-03	ci left: 3.016696e-01	ci right 3.032086e-01	k: 414341	n:1370000
KS ci ratio: 1.589417e-01	ci left: 4.085220e-04	ci right 4.797490e-04	k: 607	n:1370000
FUT8   1370000 perm   1061 sec   (1292 perm/sec)   p_kst 4.430657e-04   p_cons 3.024387e-01   p_joint 4.430657e-04

Joint ci ratio: 1.584214e-01	ci left: 4.083451e-04	ci right 4.792861e-04	k: 611	n:1380000
Cons ci ratio: 5.067485e-03	ci left: 3.016975e-01	ci right 3.032309e-01	k: 417400	n:1380000
KS ci ratio: 1.584214e-01	ci left: 4.083451e-04	ci right 4.792861e-04	k: 611	n:1380000
FUT8   1380000 perm   1074 sec   (1284 perm/sec)   p_kst 4.427536e-04   p_cons 3.024638e-01   p_joint 4.427536e-04

Joint ci ratio: 1.580346e-01	ci left: 4.074802e-04	ci right 4.780817e-04	k: 614	n:1390000
Cons ci ratio: 5.049143e-03	ci left: 3.017070e-01	ci right 3.032349e-01	k: 420434	n:1390000
KS ci ratio: 1.580346e-01	ci left: 4.074802e-04	ci right 4.780817e-04	k: 614	n:1390000
FUT8   1390000 perm   1088 sec   (1277 perm/sec)   p_kst 4.417266e-04   p_cons 3.024705e-01   p_joint 4.417266e-04

Joint ci ratio: 1.575232e-01	ci left: 4.073140e-04	ci right 4.776367e-04	k: 618	n:1400000
Cons ci ratio: 5.031391e-03	ci left: 3.016835e-01	ci right 3.032059e-01	k: 423422	n:1400000
KS ci ratio: 1.575232e-01	ci left: 4.073140e-04	ci right 4.776367e-04	k: 618	n:1400000
FUT8   1400000 perm   1102 sec   (1270 perm/sec)   p_kst 4.414286e-04   p_cons 3.024443e-01   p_joint 4.414286e-04

Joint ci ratio: 1.570167e-01	ci left: 4.071504e-04	ci right 4.771976e-04	k: 622	n:1410000
Cons ci ratio: 5.013420e-03	ci left: 3.016944e-01	ci right 3.032114e-01	k: 426458	n:1410000
KS ci ratio: 1.570167e-01	ci left: 4.071504e-04	ci right 4.771976e-04	k: 622	n:1410000
FUT8   1410000 perm   1116 sec   (1264 perm/sec)   p_kst 4.411348e-04   p_cons 3.024525e-01   p_joint 4.411348e-04

Joint ci ratio: 1.561418e-01	ci left: 4.090197e-04	ci right 4.789596e-04	k: 629	n:1420000
Cons ci ratio: 4.996532e-03	ci left: 3.016298e-01	ci right 3.031414e-01	k: 429387	n:1420000
KS ci ratio: 1.561418e-01	ci left: 4.090197e-04	ci right 4.789596e-04	k: 629	n:1420000
FUT8   1420000 perm   1130 sec   (1257 perm/sec)   p_kst 4.429577e-04   p_cons 3.023852e-01   p_joint 4.429577e-04

Joint ci ratio: 1.557715e-01	ci left: 4.081754e-04	ci right 4.777900e-04	k: 632	n:1430000
Cons ci ratio: 4.978816e-03	ci left: 3.016508e-01	ci right 3.031570e-01	k: 432437	n:1430000
KS ci ratio: 1.557715e-01	ci left: 4.081754e-04	ci right 4.777900e-04	k: 632	n:1430000
FUT8   1430000 perm   1143 sec   (1251 perm/sec)   p_kst 4.419580e-04   p_cons 3.024035e-01   p_joint 4.419580e-04

Joint ci ratio: 1.552816e-01	ci left: 4.080105e-04	ci right 4.773578e-04	k: 636	n:1440000
Cons ci ratio: 4.961752e-03	ci left: 3.016318e-01	ci right 3.031328e-01	k: 435430	n:1440000
KS ci ratio: 1.552816e-01	ci left: 4.080105e-04	ci right 4.773578e-04	k: 636	n:1440000
FUT8   1440000 perm   1158 sec   (1244 perm/sec)   p_kst 4.416667e-04   p_cons 3.023819e-01   p_joint 4.416667e-04

Joint ci ratio: 1.550386e-01	ci left: 4.065224e-04	ci right 4.754985e-04	k: 638	n:1450000
Cons ci ratio: 4.944627e-03	ci left: 3.016332e-01	ci right 3.031290e-01	k: 438452	n:1450000
KS ci ratio: 1.550386e-01	ci left: 4.065224e-04	ci right 4.754985e-04	k: 638	n:1450000
FUT8   1450000 perm   1171 sec   (1238 perm/sec)   p_kst 4.400000e-04   p_cons 3.023807e-01   p_joint 4.400000e-04

Joint ci ratio: 1.547966e-01	ci left: 4.050547e-04	ci right 4.736646e-04	k: 640	n:1460000
Cons ci ratio: 4.928055e-03	ci left: 3.016023e-01	ci right 3.030930e-01	k: 441427	n:1460000
KS ci ratio: 1.547966e-01	ci left: 4.050547e-04	ci right 4.736646e-04	k: 640	n:1460000
FUT8   1460000 perm   1186 sec   (1231 perm/sec)   p_kst 4.383562e-04   p_cons 3.023473e-01   p_joint 4.383562e-04

Joint ci ratio: 1.546762e-01	ci left: 4.029531e-04	ci right 4.711491e-04	k: 641	n:1470000
Cons ci ratio: 4.911102e-03	ci left: 3.016188e-01	ci right 3.031044e-01	k: 444471	n:1470000
KS ci ratio: 1.546762e-01	ci left: 4.029531e-04	ci right 4.711491e-04	k: 641	n:1470000
FUT8   1470000 perm   1200 sec   (1225 perm/sec)   p_kst 4.360544e-04   p_cons 3.023612e-01   p_joint 4.360544e-04

Joint ci ratio: 1.540774e-01	ci left: 4.034784e-04	ci right 4.714744e-04	k: 646	n:1480000
Cons ci ratio: 4.894463e-03	ci left: 3.016229e-01	ci right 3.031035e-01	k: 447497	n:1480000
KS ci ratio: 1.540774e-01	ci left: 4.034784e-04	ci right 4.714744e-04	k: 646	n:1480000
FUT8   1480000 perm   1215 sec   (1219 perm/sec)   p_kst 4.364865e-04   p_cons 3.023628e-01   p_joint 4.364865e-04

Joint ci ratio: 1.534854e-01	ci left: 4.039970e-04	ci right 4.717949e-04	k: 651	n:1490000
Cons ci ratio: 4.877683e-03	ci left: 3.016539e-01	ci right 3.031295e-01	k: 450563	n:1490000
KS ci ratio: 1.534854e-01	ci left: 4.039970e-04	ci right 4.717949e-04	k: 651	n:1490000
FUT8   1490000 perm   1229 sec   (1212 perm/sec)   p_kst 4.369128e-04   p_cons 3.023913e-01   p_joint 4.369128e-04

Joint ci ratio: 1.531336e-01	ci left: 4.032270e-04	ci right 4.707262e-04	k: 654	n:1500000
Cons ci ratio: 4.861642e-03	ci left: 3.016351e-01	ci right 3.031057e-01	k: 453555	n:1500000
KS ci ratio: 1.531336e-01	ci left: 4.032270e-04	ci right 4.707262e-04	k: 654	n:1500000
FUT8   1500000 perm   1244 sec   (1206 perm/sec)   p_kst 4.360000e-04   p_cons 3.023700e-01   p_joint 4.360000e-04

Joint ci ratio: 1.526681e-01	ci left: 4.031043e-04	ci right 4.703591e-04	k: 658	n:1510000
Cons ci ratio: 4.845423e-03	ci left: 3.016456e-01	ci right 3.031114e-01	k: 456591	n:1510000
KS ci ratio: 1.526681e-01	ci left: 4.031043e-04	ci right 4.703591e-04	k: 658	n:1510000
FUT8   1510000 perm   1258 sec   (1200 perm/sec)   p_kst 4.357616e-04   p_cons 3.023781e-01   p_joint 4.357616e-04

Joint ci ratio: 1.520922e-01	ci left: 4.036163e-04	ci right 4.706795e-04	k: 663	n:1520000
Cons ci ratio: 4.829389e-03	ci left: 3.016541e-01	ci right 3.031151e-01	k: 459624	n:1520000
KS ci ratio: 1.520922e-01	ci left: 4.036163e-04	ci right 4.706795e-04	k: 663	n:1520000
FUT8   1520000 perm   1273 sec   (1194 perm/sec)   p_kst 4.361842e-04   p_cons 3.023842e-01   p_joint 4.361842e-04

Joint ci ratio: 1.514096e-01	ci left: 4.047510e-04	ci right 4.716735e-04	k: 669	n:1530000
Cons ci ratio: 4.813072e-03	ci left: 3.017010e-01	ci right 3.031573e-01	k: 462716	n:1530000
KS ci ratio: 1.514096e-01	ci left: 4.047510e-04	ci right 4.716735e-04	k: 669	n:1530000
FUT8   1530000 perm   1288 sec   (1188 perm/sec)   p_kst 4.372549e-04   p_cons 3.024288e-01   p_joint 4.372549e-04

Joint ci ratio: 1.514098e-01	ci left: 4.021227e-04	ci right 4.686107e-04	k: 669	n:1540000
Cons ci ratio: 4.797755e-03	ci left: 3.016740e-01	ci right 3.031255e-01	k: 465695	n:1540000
KS ci ratio: 1.514098e-01	ci left: 4.021227e-04	ci right 4.686107e-04	k: 669	n:1540000
FUT8   1540000 perm   1303 sec   (1182 perm/sec)   p_kst 4.344156e-04   p_cons 3.023994e-01   p_joint 4.344156e-04

Joint ci ratio: 1.509599e-01	ci left: 4.020114e-04	ci right 4.682656e-04	k: 673	n:1550000
Cons ci ratio: 4.781938e-03	ci left: 3.017041e-01	ci right 3.031509e-01	k: 468762	n:1550000
KS ci ratio: 1.509599e-01	ci left: 4.020114e-04	ci right 4.682656e-04	k: 673	n:1550000
FUT8   1550000 perm   1318 sec   (1176 perm/sec)   p_kst 4.341935e-04   p_cons 3.024271e-01   p_joint 4.341935e-04

Joint ci ratio: 1.504030e-01	ci left: 4.025187e-04	ci right 4.685898e-04	k: 678	n:1560000
Cons ci ratio: 4.766372e-03	ci left: 3.017254e-01	ci right 3.031676e-01	k: 471816	n:1560000
KS ci ratio: 1.504030e-01	ci left: 4.025187e-04	ci right 4.685898e-04	k: 678	n:1560000
FUT8   1560000 perm   1333 sec   (1170 perm/sec)   p_kst 4.346154e-04   p_cons 3.024462e-01   p_joint 4.346154e-04

Joint ci ratio: 1.499620e-01	ci left: 4.024069e-04	ci right 4.682486e-04	k: 682	n:1570000
Cons ci ratio: 4.751587e-03	ci left: 3.016905e-01	ci right 3.031280e-01	k: 474782	n:1570000
KS ci ratio: 1.499620e-01	ci left: 4.024069e-04	ci right 4.682486e-04	k: 682	n:1570000
FUT8   1570000 perm   1348 sec   (1164 perm/sec)   p_kst 4.343949e-04   p_cons 3.024089e-01   p_joint 4.343949e-04

Joint ci ratio: 1.495248e-01	ci left: 4.022968e-04	ci right 4.679114e-04	k: 686	n:1580000
Cons ci ratio: 4.736535e-03	ci left: 3.016921e-01	ci right 3.031251e-01	k: 477805	n:1580000
KS ci ratio: 1.495248e-01	ci left: 4.022968e-04	ci right 4.679114e-04	k: 686	n:1580000
FUT8   1580000 perm   1363 sec   (1159 perm/sec)   p_kst 4.341772e-04   p_cons 3.024082e-01   p_joint 4.341772e-04

Joint ci ratio: 1.485546e-01	ci left: 4.052160e-04	ci right 4.708398e-04	k: 695	n:1590000
Cons ci ratio: 4.721279e-03	ci left: 3.017245e-01	ci right 3.031530e-01	k: 480877	n:1590000
KS ci ratio: 1.485546e-01	ci left: 4.052160e-04	ci right 4.708398e-04	k: 695	n:1590000
FUT8   1590000 perm   1378 sec   (1153 perm/sec)   p_kst 4.371069e-04   p_cons 3.024384e-01   p_joint 4.371069e-04

Joint ci ratio: 1.479184e-01	ci left: 4.062943e-04	ci right 4.717860e-04	k: 701	n:1600000
Cons ci ratio: 4.706547e-03	ci left: 3.017227e-01	ci right 3.031467e-01	k: 483895	n:1600000
KS ci ratio: 1.479184e-01	ci left: 4.062943e-04	ci right 4.717860e-04	k: 701	n:1600000
FUT8   1600000 perm   1394 sec   (1148 perm/sec)   p_kst 4.381250e-04   p_cons 3.024344e-01   p_joint 4.381250e-04

Joint ci ratio: 1.478133e-01	ci left: 4.043689e-04	ci right 4.694998e-04	k: 702	n:1610000
Cons ci ratio: 4.691640e-03	ci left: 3.017489e-01	ci right 3.031686e-01	k: 486958	n:1610000
KS ci ratio: 1.478133e-01	ci left: 4.043689e-04	ci right 4.694998e-04	k: 702	n:1610000
FUT8   1610000 perm   1409 sec   (1142 perm/sec)   p_kst 4.360248e-04   p_cons 3.024584e-01   p_joint 4.360248e-04

Joint ci ratio: 1.472904e-01	ci left: 4.048452e-04	ci right 4.698019e-04	k: 707	n:1620000
Cons ci ratio: 4.677456e-03	ci left: 3.017224e-01	ci right 3.031376e-01	k: 489936	n:1620000
KS ci ratio: 1.472904e-01	ci left: 4.048452e-04	ci right 4.698019e-04	k: 707	n:1620000
FUT8   1620000 perm   1425 sec   (1137 perm/sec)   p_kst 4.364198e-04   p_cons 3.024296e-01   p_joint 4.364198e-04

Joint ci ratio: 1.470829e-01	ci left: 4.035433e-04	ci right 4.681919e-04	k: 709	n:1630000
Cons ci ratio: 4.662851e-03	ci left: 3.017458e-01	ci right 3.031567e-01	k: 492995	n:1630000
KS ci ratio: 1.470829e-01	ci left: 4.035433e-04	ci right 4.681919e-04	k: 709	n:1630000
FUT8   1630000 perm   1440 sec   (1132 perm/sec)   p_kst 4.349693e-04   p_cons 3.024509e-01   p_joint 4.349693e-04

Joint ci ratio: 1.460577e-01	ci left: 4.069567e-04	ci right 4.716580e-04	k: 719	n:1640000
Cons ci ratio: 4.648133e-03	ci left: 3.017916e-01	ci right 3.031982e-01	k: 496091	n:1640000
KS ci ratio: 1.460577e-01	ci left: 4.069567e-04	ci right 4.716580e-04	k: 719	n:1640000
FUT8   1640000 perm   1456 sec   (1126 perm/sec)   p_kst 4.384146e-04   p_cons 3.024945e-01   p_joint 4.384146e-04

Joint ci ratio: 1.454528e-01	ci left: 4.079940e-04	ci right 4.725683e-04	k: 725	n:1650000
Cons ci ratio: 4.633793e-03	ci left: 3.018149e-01	ci right 3.032173e-01	k: 499151	n:1650000
KS ci ratio: 1.454528e-01	ci left: 4.079940e-04	ci right 4.725683e-04	k: 725	n:1650000
FUT8   1650000 perm   1472 sec   (1121 perm/sec)   p_kst 4.393939e-04   p_cons 3.025158e-01   p_joint 4.393939e-04

Joint ci ratio: 1.446578e-01	ci left: 4.101807e-04	ci right 4.747156e-04	k: 733	n:1660000
Cons ci ratio: 4.620489e-03	ci left: 3.017555e-01	ci right 3.031536e-01	k: 502074	n:1660000
KS ci ratio: 1.446578e-01	ci left: 4.101807e-04	ci right 4.747156e-04	k: 733	n:1660000
FUT8   1660000 perm   1488 sec   (1116 perm/sec)   p_kst 4.415663e-04   p_cons 3.024542e-01   p_joint 4.415663e-04

Joint ci ratio: 1.442653e-01	ci left: 4.100331e-04	ci right 4.743547e-04	k: 737	n:1670000
Cons ci ratio: 4.606971e-03	ci left: 3.017268e-01	ci right 3.031206e-01	k: 505047	n:1670000
KS ci ratio: 1.442653e-01	ci left: 4.100331e-04	ci right 4.743547e-04	k: 737	n:1670000
FUT8   1670000 perm   1504 sec   (1111 perm/sec)   p_kst 4.413174e-04   p_cons 3.024234e-01   p_joint 4.413174e-04

Joint ci ratio: 1.441678e-01	ci left: 4.081662e-04	ci right 4.721479e-04	k: 738	n:1680000
Cons ci ratio: 4.593040e-03	ci left: 3.017472e-01	ci right 3.031369e-01	k: 508102	n:1680000
KS ci ratio: 1.441678e-01	ci left: 4.081662e-04	ci right 4.721479e-04	k: 738	n:1680000
FUT8   1680000 perm   1520 sec   (1105 perm/sec)   p_kst 4.392857e-04   p_cons 3.024417e-01   p_joint 4.392857e-04

Joint ci ratio: 1.437792e-01	ci left: 4.080326e-04	ci right 4.718062e-04	k: 742	n:1690000
Cons ci ratio: 4.579594e-03	ci left: 3.017342e-01	ci right 3.031197e-01	k: 511101	n:1690000
KS ci ratio: 1.437792e-01	ci left: 4.080326e-04	ci right 4.718062e-04	k: 742	n:1690000
FUT8   1690000 perm   1537 sec   (1100 perm/sec)   p_kst 4.390533e-04   p_cons 3.024266e-01   p_joint 4.390533e-04

Joint ci ratio: 1.431065e-01	ci left: 4.096023e-04	ci right 4.732961e-04	k: 749	n:1700000
Cons ci ratio: 4.566126e-03	ci left: 3.017343e-01	ci right 3.031158e-01	k: 514122	n:1700000
KS ci ratio: 1.431065e-01	ci left: 4.096023e-04	ci right 4.732961e-04	k: 749	n:1700000
FUT8   1700000 perm   1553 sec   (1095 perm/sec)   p_kst 4.405882e-04   p_cons 3.024247e-01   p_joint 4.405882e-04

Joint ci ratio: 1.427265e-01	ci left: 4.094625e-04	ci right 4.729511e-04	k: 753	n:1710000
Cons ci ratio: 4.552700e-03	ci left: 3.017414e-01	ci right 3.031189e-01	k: 517155	n:1710000
KS ci ratio: 1.427265e-01	ci left: 4.094625e-04	ci right 4.729511e-04	k: 753	n:1710000
FUT8   1710000 perm   1569 sec   (1090 perm/sec)   p_kst 4.403509e-04   p_cons 3.024298e-01   p_joint 4.403509e-04

Joint ci ratio: 1.424434e-01	ci left: 4.087639e-04	ci right 4.720078e-04	k: 756	n:1720000
Cons ci ratio: 4.540117e-03	ci left: 3.016811e-01	ci right 3.030544e-01	k: 520072	n:1720000
KS ci ratio: 1.424434e-01	ci left: 4.087639e-04	ci right 4.720078e-04	k: 756	n:1720000
FUT8   1720000 perm   1585 sec   (1085 perm/sec)   p_kst 4.395349e-04   p_cons 3.023674e-01   p_joint 4.395349e-04

Joint ci ratio: 1.416040e-01	ci left: 4.114186e-04	ci right 4.746664e-04	k: 765	n:1730000
Cons ci ratio: 4.526968e-03	ci left: 3.016839e-01	ci right 3.030532e-01	k: 523097	n:1730000
KS ci ratio: 1.416040e-01	ci left: 4.114186e-04	ci right 4.746664e-04	k: 765	n:1730000
FUT8   1730000 perm   1602 sec   (1080 perm/sec)   p_kst 4.421965e-04   p_cons 3.023682e-01   p_joint 4.421965e-04

Joint ci ratio: 1.412357e-01	ci left: 4.112716e-04	ci right 4.743186e-04	k: 769	n:1740000
Cons ci ratio: 4.514130e-03	ci left: 3.016682e-01	ci right 3.030336e-01	k: 526090	n:1740000
KS ci ratio: 1.412357e-01	ci left: 4.112716e-04	ci right 4.743186e-04	k: 769	n:1740000
FUT8   1740000 perm   1618 sec   (1075 perm/sec)   p_kst 4.419540e-04   p_cons 3.023506e-01   p_joint 4.419540e-04

Joint ci ratio: 1.410527e-01	ci left: 4.100240e-04	ci right 4.727914e-04	k: 771	n:1750000
Cons ci ratio: 4.501132e-03	ci left: 3.016779e-01	ci right 3.030394e-01	k: 529127	n:1750000
KS ci ratio: 1.410527e-01	ci left: 4.100240e-04	ci right 4.727914e-04	k: 771	n:1750000
FUT8   1750000 perm   1635 sec   (1070 perm/sec)   p_kst 4.405714e-04   p_cons 3.023583e-01   p_joint 4.405714e-04

Joint ci ratio: 1.407795e-01	ci left: 4.093387e-04	ci right 4.718697e-04	k: 774	n:1760000
Cons ci ratio: 4.488124e-03	ci left: 3.016988e-01	ci right 3.030564e-01	k: 532184	n:1760000
KS ci ratio: 1.407795e-01	ci left: 4.093387e-04	ci right 4.718697e-04	k: 774	n:1760000
FUT8   1760000 perm   1651 sec   (1066 perm/sec)   p_kst 4.397727e-04   p_cons 3.023773e-01   p_joint 4.397727e-04

Joint ci ratio: 1.405079e-01	ci left: 4.086613e-04	ci right 4.709583e-04	k: 777	n:1770000
Cons ci ratio: 4.475606e-03	ci left: 3.016839e-01	ci right 3.030377e-01	k: 535178	n:1770000
KS ci ratio: 1.405079e-01	ci left: 4.086613e-04	ci right 4.709583e-04	k: 777	n:1770000
FUT8   1770000 perm   1668 sec   (1061 perm/sec)   p_kst 4.389831e-04   p_cons 3.023605e-01   p_joint 4.389831e-04

Joint ci ratio: 1.398799e-01	ci left: 4.101602e-04	ci right 4.723829e-04	k: 784	n:1780000
Cons ci ratio: 4.463139e-03	ci left: 3.016742e-01	ci right 3.030242e-01	k: 538181	n:1780000
KS ci ratio: 1.398799e-01	ci left: 4.101602e-04	ci right 4.723829e-04	k: 784	n:1780000
FUT8   1780000 perm   1685 sec   (1057 perm/sec)   p_kst 4.404494e-04   p_cons 3.023489e-01   p_joint 4.404494e-04

Joint ci ratio: 1.397021e-01	ci left: 4.089470e-04	ci right 4.709002e-04	k: 786	n:1790000
Cons ci ratio: 4.450905e-03	ci left: 3.016524e-01	ci right 3.029985e-01	k: 541162	n:1790000
KS ci ratio: 1.397021e-01	ci left: 4.089470e-04	ci right 4.709002e-04	k: 786	n:1790000
FUT8   1790000 perm   1701 sec   (1052 perm/sec)   p_kst 4.391061e-04   p_cons 3.023251e-01   p_joint 4.391061e-04

Joint ci ratio: 1.393485e-01	ci left: 4.088197e-04	ci right 4.705839e-04	k: 790	n:1800000
Cons ci ratio: 4.438766e-03	ci left: 3.016313e-01	ci right 3.029737e-01	k: 544144	n:1800000
KS ci ratio: 1.393485e-01	ci left: 4.088197e-04	ci right 4.705839e-04	k: 790	n:1800000
FUT8   1800000 perm   1719 sec   (1047 perm/sec)   p_kst 4.388889e-04   p_cons 3.023022e-01   p_joint 4.388889e-04

Joint ci ratio: 1.387359e-01	ci left: 4.102939e-04	ci right 4.719858e-04	k: 797	n:1810000
Cons ci ratio: 4.426568e-03	ci left: 3.016255e-01	ci right 3.029641e-01	k: 547153	n:1810000
KS ci ratio: 1.387359e-01	ci left: 4.102939e-04	ci right 4.719858e-04	k: 797	n:1810000
FUT8   1810000 perm   1736 sec   (1043 perm/sec)   p_kst 4.403315e-04   p_cons 3.022945e-01   p_joint 4.403315e-04

Joint ci ratio: 1.381312e-01	ci left: 4.117525e-04	ci right 4.733717e-04	k: 804	n:1820000
Cons ci ratio: 4.414488e-03	ci left: 3.016180e-01	ci right 3.029530e-01	k: 550159	n:1820000
KS ci ratio: 1.381312e-01	ci left: 4.117525e-04	ci right 4.733717e-04	k: 804	n:1820000
FUT8   1820000 perm   1753 sec   (1038 perm/sec)   p_kst 4.417582e-04   p_cons 3.022852e-01   p_joint 4.417582e-04

Joint ci ratio: 1.376193e-01	ci left: 4.126681e-04	ci right 4.741767e-04	k: 810	n:1830000
Cons ci ratio: 4.402404e-03	ci left: 3.016205e-01	ci right 3.029518e-01	k: 553183	n:1830000
KS ci ratio: 1.376193e-01	ci left: 4.126681e-04	ci right 4.741767e-04	k: 810	n:1830000
FUT8   1830000 perm   1771 sec   (1033 perm/sec)   p_kst 4.426230e-04   p_cons 3.022858e-01   p_joint 4.426230e-04

Joint ci ratio: 1.372812e-01	ci left: 4.125245e-04	ci right 4.738483e-04	k: 814	n:1840000
Cons ci ratio: 4.390537e-03	ci left: 3.016115e-01	ci right 3.029391e-01	k: 556186	n:1840000
KS ci ratio: 1.372812e-01	ci left: 4.125245e-04	ci right 4.738483e-04	k: 814	n:1840000
FUT8   1840000 perm   1788 sec   (1029 perm/sec)   p_kst 4.423913e-04   p_cons 3.022750e-01   p_joint 4.423913e-04

Joint ci ratio: 1.370292e-01	ci left: 4.118606e-04	ci right 4.729642e-04	k: 817	n:1850000
Cons ci ratio: 4.378630e-03	ci left: 3.016156e-01	ci right 3.029396e-01	k: 559213	n:1850000
KS ci ratio: 1.370292e-01	ci left: 4.118606e-04	ci right 4.729642e-04	k: 817	n:1850000
FUT8   1850000 perm   1806 sec   (1025 perm/sec)   p_kst 4.416216e-04   p_cons 3.022773e-01   p_joint 4.416216e-04

Joint ci ratio: 1.366954e-01	ci left: 4.117232e-04	ci right 4.726455e-04	k: 821	n:1860000
Cons ci ratio: 4.366815e-03	ci left: 3.016202e-01	ci right 3.029407e-01	k: 562241	n:1860000
KS ci ratio: 1.366954e-01	ci left: 4.117232e-04	ci right 4.726455e-04	k: 821	n:1860000
FUT8   1860000 perm   1823 sec   (1020 perm/sec)   p_kst 4.413978e-04   p_cons 3.022801e-01   p_joint 4.413978e-04

Joint ci ratio: 1.362816e-01	ci left: 4.121040e-04	ci right 4.728830e-04	k: 826	n:1870000
Cons ci ratio: 4.355023e-03	ci left: 3.016317e-01	ci right 3.029486e-01	k: 565282	n:1870000
KS ci ratio: 1.362816e-01	ci left: 4.121040e-04	ci right 4.728830e-04	k: 826	n:1870000
FUT8   1870000 perm   1841 sec   (1016 perm/sec)   p_kst 4.417112e-04   p_cons 3.022898e-01   p_joint 4.417112e-04

Joint ci ratio: 1.357898e-01	ci left: 4.129948e-04	ci right 4.736677e-04	k: 832	n:1880000
Cons ci ratio: 4.343326e-03	ci left: 3.016430e-01	ci right 3.029565e-01	k: 568323	n:1880000
KS ci ratio: 1.357898e-01	ci left: 4.129948e-04	ci right 4.736677e-04	k: 832	n:1880000
FUT8   1880000 perm   1859 sec   (1011 perm/sec)   p_kst 4.425532e-04   p_cons 3.022995e-01   p_joint 4.425532e-04

Joint ci ratio: 1.354650e-01	ci left: 4.128543e-04	ci right 4.733497e-04	k: 836	n:1890000
Cons ci ratio: 4.331891e-03	ci left: 3.016379e-01	ci right 3.029479e-01	k: 571333	n:1890000
KS ci ratio: 1.354650e-01	ci left: 4.128543e-04	ci right 4.733497e-04	k: 836	n:1890000
FUT8   1890000 perm   1877 sec   (1007 perm/sec)   p_kst 4.423280e-04   p_cons 3.022926e-01   p_joint 4.423280e-04

Joint ci ratio: 1.352229e-01	ci left: 4.122068e-04	ci right 4.724907e-04	k: 839	n:1900000
Cons ci ratio: 4.320794e-03	ci left: 3.016086e-01	ci right 3.029151e-01	k: 574297	n:1900000
KS ci ratio: 1.352229e-01	ci left: 4.122068e-04	ci right 4.724907e-04	k: 839	n:1900000
FUT8   1900000 perm   1895 sec   (1003 perm/sec)   p_kst 4.415789e-04   p_cons 3.022616e-01   p_joint 4.415789e-04

Joint ci ratio: 1.349821e-01	ci left: 4.115663e-04	ci right 4.716407e-04	k: 842	n:1910000
Cons ci ratio: 4.309760e-03	ci left: 3.015818e-01	ci right 3.028848e-01	k: 577265	n:1910000
KS ci ratio: 1.349821e-01	ci left: 4.115663e-04	ci right 4.716407e-04	k: 842	n:1910000
FUT8   1910000 perm   1913 sec   (998 perm/sec)   p_kst 4.408377e-04   p_cons 3.022330e-01   p_joint 4.408377e-04

Joint ci ratio: 1.349023e-01	ci left: 4.099259e-04	ci right 4.697227e-04	k: 843	n:1920000
Cons ci ratio: 4.298582e-03	ci left: 3.015776e-01	ci right 3.028772e-01	k: 580276	n:1920000
KS ci ratio: 1.349023e-01	ci left: 4.099259e-04	ci right 4.697227e-04	k: 843	n:1920000
FUT8   1920000 perm   1932 sec   (994 perm/sec)   p_kst 4.390625e-04   p_cons 3.022271e-01   p_joint 4.390625e-04

Joint ci ratio: 1.346632e-01	ci left: 4.093039e-04	ci right 4.688957e-04	k: 846	n:1930000
Cons ci ratio: 4.287265e-03	ci left: 3.015957e-01	ci right 3.028920e-01	k: 583330	n:1930000
KS ci ratio: 1.346632e-01	ci left: 4.093039e-04	ci right 4.688957e-04	k: 846	n:1930000
FUT8   1930000 perm   1950 sec   (990 perm/sec)   p_kst 4.383420e-04   p_cons 3.022435e-01   p_joint 4.383420e-04

Joint ci ratio: 1.341887e-01	ci left: 4.101829e-04	ci right 4.696754e-04	k: 852	n:1940000
Cons ci ratio: 4.276125e-03	ci left: 3.016048e-01	ci right 3.028978e-01	k: 586367	n:1940000
KS ci ratio: 1.341887e-01	ci left: 4.101829e-04	ci right 4.696754e-04	k: 852	n:1940000
FUT8   1940000 perm   1968 sec   (986 perm/sec)   p_kst 4.391753e-04   p_cons 3.022510e-01   p_joint 4.391753e-04

Joint ci ratio: 1.339534e-01	ci left: 4.095663e-04	ci right 4.688569e-04	k: 855	n:1950000
Cons ci ratio: 4.265170e-03	ci left: 3.016042e-01	ci right 3.028938e-01	k: 589385	n:1950000
KS ci ratio: 1.339534e-01	ci left: 4.095663e-04	ci right 4.688569e-04	k: 855	n:1950000
FUT8   1950000 perm   1985 sec   (982 perm/sec)   p_kst 4.384615e-04   p_cons 3.022487e-01   p_joint 4.384615e-04

Joint ci ratio: 1.338753e-01	ci left: 4.079697e-04	ci right 4.669921e-04	k: 856	n:1960000
Cons ci ratio: 4.254339e-03	ci left: 3.015995e-01	ci right 3.028858e-01	k: 592395	n:1960000
KS ci ratio: 1.338753e-01	ci left: 4.079697e-04	ci right 4.669921e-04	k: 856	n:1960000
FUT8   1960000 perm   2004 sec   (978 perm/sec)   p_kst 4.367347e-04   p_cons 3.022423e-01   p_joint 4.367347e-04

Joint ci ratio: 1.336417e-01	ci left: 4.073707e-04	ci right 4.661953e-04	k: 859	n:1970000
Cons ci ratio: 4.243510e-03	ci left: 3.016029e-01	ci right 3.028860e-01	k: 595421	n:1970000
KS ci ratio: 1.336417e-01	ci left: 4.073707e-04	ci right 4.661953e-04	k: 859	n:1970000
FUT8   1970000 perm   2022 sec   (974 perm/sec)   p_kst 4.360406e-04   p_cons 3.022442e-01   p_joint 4.360406e-04

Joint ci ratio: 1.333320e-01	ci left: 4.072660e-04	ci right 4.659284e-04	k: 863	n:1980000
Cons ci ratio: 4.232965e-03	ci left: 3.015862e-01	ci right 3.028659e-01	k: 598407	n:1980000
KS ci ratio: 1.333320e-01	ci left: 4.072660e-04	ci right 4.659284e-04	k: 863	n:1980000
FUT8   1980000 perm   2040 sec   (970 perm/sec)   p_kst 4.358586e-04   p_cons 3.022258e-01   p_joint 4.358586e-04

Joint ci ratio: 1.331011e-01	ci left: 4.066767e-04	ci right 4.651448e-04	k: 866	n:1990000
Cons ci ratio: 4.222468e-03	ci left: 3.015726e-01	ci right 3.028491e-01	k: 601399	n:1990000
KS ci ratio: 1.331011e-01	ci left: 4.066767e-04	ci right 4.651448e-04	k: 866	n:1990000
FUT8   1990000 perm   2059 sec   (966 perm/sec)   p_kst 4.351759e-04   p_cons 3.022106e-01   p_joint 4.351759e-04

Joint ci ratio: 1.324912e-01	ci left: 4.085105e-04	ci right 4.669519e-04	k: 874	n:2000000
Cons ci ratio: 4.212049e-03	ci left: 3.015591e-01	ci right 3.028325e-01	k: 604391	n:2000000
KS ci ratio: 1.324912e-01	ci left: 4.085105e-04	ci right 4.669519e-04	k: 874	n:2000000
FUT8   2000000 perm   2078 sec   (962 perm/sec)   p_kst 4.370000e-04   p_cons 3.021955e-01   p_joint 4.370000e-04

Joint ci ratio: 1.322647e-01	ci left: 4.079212e-04	ci right 4.661707e-04	k: 877	n:2010000
Cons ci ratio: 4.201687e-03	ci left: 3.015478e-01	ci right 3.028179e-01	k: 607387	n:2010000
KS ci ratio: 1.322647e-01	ci left: 4.079212e-04	ci right 4.661707e-04	k: 877	n:2010000
FUT8   2010000 perm   2097 sec   (959 perm/sec)   p_kst 4.363184e-04   p_cons 3.021826e-01   p_joint 4.363184e-04

Joint ci ratio: 1.318896e-01	ci left: 4.082952e-04	ci right 4.664199e-04	k: 882	n:2020000
Cons ci ratio: 4.191224e-03	ci left: 3.015544e-01	ci right 3.028214e-01	k: 610419	n:2020000
KS ci ratio: 1.318896e-01	ci left: 4.082952e-04	ci right 4.664199e-04	k: 882	n:2020000
FUT8   2020000 perm   2116 sec   (955 perm/sec)   p_kst 4.366337e-04   p_cons 3.021876e-01   p_joint 4.366337e-04

Joint ci ratio: 1.317406e-01	ci left: 4.072367e-04	ci right 4.651400e-04	k: 884	n:2030000
Cons ci ratio: 4.180482e-03	ci left: 3.015969e-01	ci right 3.028608e-01	k: 613524	n:2030000
KS ci ratio: 1.317406e-01	ci left: 4.072367e-04	ci right 4.651400e-04	k: 884	n:2030000
FUT8   2030000 perm   2134 sec   (951 perm/sec)   p_kst 4.354680e-04   p_cons 3.022286e-01   p_joint 4.354680e-04

Joint ci ratio: 1.313700e-01	ci left: 4.076107e-04	ci right 4.653915e-04	k: 889	n:2040000
Cons ci ratio: 4.169953e-03	ci left: 3.016257e-01	ci right 3.028866e-01	k: 616602	n:2040000
KS ci ratio: 1.313700e-01	ci left: 4.076107e-04	ci right 4.653915e-04	k: 889	n:2040000
FUT8   2040000 perm   2153 sec   (948 perm/sec)   p_kst 4.357843e-04   p_cons 3.022559e-01   p_joint 4.357843e-04

Joint ci ratio: 1.312964e-01	ci left: 4.060941e-04	ci right 4.636251e-04	k: 890	n:2050000
Cons ci ratio: 4.159725e-03	ci left: 3.016319e-01	ci right 3.028897e-01	k: 619634	n:2050000
KS ci ratio: 1.312964e-01	ci left: 4.060941e-04	ci right 4.636251e-04	k: 890	n:2050000
FUT8   2050000 perm   2172 sec   (944 perm/sec)   p_kst 4.341463e-04   p_cons 3.022605e-01   p_joint 4.341463e-04

Joint ci ratio: 1.310026e-01	ci left: 4.060008e-04	ci right 4.633799e-04	k: 894	n:2060000
Cons ci ratio: 4.149671e-03	ci left: 3.016278e-01	ci right 3.028825e-01	k: 622645	n:2060000
KS ci ratio: 1.310026e-01	ci left: 4.060008e-04	ci right 4.633799e-04	k: 894	n:2060000
FUT8   2060000 perm   2191 sec   (940 perm/sec)   p_kst 4.339806e-04   p_cons 3.022549e-01   p_joint 4.339806e-04

Joint ci ratio: 1.307109e-01	ci left: 4.059086e-04	ci right 4.631370e-04	k: 898	n:2070000
Cons ci ratio: 4.139700e-03	ci left: 3.016227e-01	ci right 3.028744e-01	k: 625654	n:2070000
KS ci ratio: 1.307109e-01	ci left: 4.059086e-04	ci right 4.631370e-04	k: 898	n:2070000
FUT8   2070000 perm   2211 sec   (936 perm/sec)   p_kst 4.338164e-04   p_cons 3.022483e-01   p_joint 4.338164e-04

Joint ci ratio: 1.304211e-01	ci left: 4.058174e-04	ci right 4.628962e-04	k: 902	n:2080000
Cons ci ratio: 4.130069e-03	ci left: 3.015904e-01	ci right 3.028390e-01	k: 628606	n:2080000
KS ci ratio: 1.304211e-01	ci left: 4.058174e-04	ci right 4.628962e-04	k: 902	n:2080000
FUT8   2080000 perm   2230 sec   (933 perm/sec)   p_kst 4.336538e-04   p_cons 3.022144e-01   p_joint 4.336538e-04

Joint ci ratio: 1.299184e-01	ci left: 4.071159e-04	ci right 4.641397e-04	k: 909	n:2090000
Cons ci ratio: 4.119817e-03	ci left: 3.016286e-01	ci right 3.028743e-01	k: 631705	n:2090000
KS ci ratio: 1.299184e-01	ci left: 4.071159e-04	ci right 4.641397e-04	k: 909	n:2090000
FUT8   2090000 perm   2250 sec   (929 perm/sec)   p_kst 4.349282e-04   p_cons 3.022512e-01   p_joint 4.349282e-04

Joint ci ratio: 1.298472e-01	ci left: 4.056380e-04	ci right 4.624211e-04	k: 910	n:2100000
Cons ci ratio: 4.109920e-03	ci left: 3.016380e-01	ci right 3.028807e-01	k: 634744	n:2100000
KS ci ratio: 1.298472e-01	ci left: 4.056380e-04	ci right 4.624211e-04	k: 910	n:2100000
FUT8   2100000 perm   2269 sec   (925 perm/sec)   p_kst 4.333333e-04   p_cons 3.022590e-01   p_joint 4.333333e-04

Joint ci ratio: 1.296340e-01	ci left: 4.050911e-04	ci right 4.616975e-04	k: 913	n:2110000
Cons ci ratio: 4.100315e-03	ci left: 3.016245e-01	ci right 3.028642e-01	k: 637735	n:2110000
KS ci ratio: 1.296340e-01	ci left: 4.050911e-04	ci right 4.616975e-04	k: 913	n:2110000
FUT8   2110000 perm   2289 sec   (922 perm/sec)   p_kst 4.327014e-04   p_cons 3.022441e-01   p_joint 4.327014e-04

Joint ci ratio: 1.292105e-01	ci left: 4.059189e-04	ci right 4.624414e-04	k: 919	n:2120000
Cons ci ratio: 4.090662e-03	ci left: 3.016229e-01	ci right 3.028597e-01	k: 640751	n:2120000
KS ci ratio: 1.292105e-01	ci left: 4.059189e-04	ci right 4.624414e-04	k: 919	n:2120000
FUT8   2120000 perm   2309 sec   (918 perm/sec)   p_kst 4.334906e-04   p_cons 3.022410e-01   p_joint 4.334906e-04

Joint ci ratio: 1.286522e-01	ci left: 4.076479e-04	ci right 4.641473e-04	k: 927	n:2130000
Cons ci ratio: 4.081291e-03	ci left: 3.015993e-01	ci right 3.028332e-01	k: 643720	n:2130000
KS ci ratio: 1.286522e-01	ci left: 4.076479e-04	ci right 4.641473e-04	k: 927	n:2130000
FUT8   2130000 perm   2329 sec   (915 perm/sec)   p_kst 4.352113e-04   p_cons 3.022160e-01   p_joint 4.352113e-04

Joint ci ratio: 1.283759e-01	ci left: 4.075521e-04	ci right 4.639076e-04	k: 931	n:2140000
Cons ci ratio: 4.071826e-03	ci left: 3.015923e-01	ci right 3.028232e-01	k: 646724	n:2140000
KS ci ratio: 1.283759e-01	ci left: 4.075521e-04	ci right 4.639076e-04	k: 931	n:2140000
FUT8   2140000 perm   2349 sec   (911 perm/sec)   p_kst 4.350467e-04   p_cons 3.022075e-01   p_joint 4.350467e-04

Joint ci ratio: 1.278283e-01	ci left: 4.092582e-04	ci right 4.655899e-04	k: 939	n:2150000
Cons ci ratio: 4.062037e-03	ci left: 3.016257e-01	ci right 3.028539e-01	k: 649815	n:2150000
KS ci ratio: 1.278283e-01	ci left: 4.092582e-04	ci right 4.655899e-04	k: 939	n:2150000
FUT8   2150000 perm   2369 sec   (907 perm/sec)   p_kst 4.367442e-04   p_cons 3.022395e-01   p_joint 4.367442e-04

Joint ci ratio: 1.276926e-01	ci left: 4.082598e-04	ci right 4.643900e-04	k: 941	n:2160000
Cons ci ratio: 4.052616e-03	ci left: 3.016279e-01	ci right 3.028532e-01	k: 652839	n:2160000
KS ci ratio: 1.276926e-01	ci left: 4.082598e-04	ci right 4.643900e-04	k: 941	n:2160000
FUT8   2160000 perm   2390 sec   (904 perm/sec)   p_kst 4.356481e-04   p_cons 3.022403e-01   p_joint 4.356481e-04

Joint ci ratio: 1.274898e-01	ci left: 4.077168e-04	ci right 4.636765e-04	k: 944	n:2170000
Cons ci ratio: 4.043375e-03	ci left: 3.016181e-01	ci right 3.028405e-01	k: 655837	n:2170000
KS ci ratio: 1.274898e-01	ci left: 4.077168e-04	ci right 4.636765e-04	k: 944	n:2170000
FUT8   2170000 perm   2410 sec   (900 perm/sec)   p_kst 4.350230e-04   p_cons 3.022290e-01   p_joint 4.350230e-04

Joint ci ratio: 1.271539e-01	ci left: 4.080671e-04	ci right 4.639161e-04	k: 949	n:2180000
Cons ci ratio: 4.034048e-03	ci left: 3.016239e-01	ci right 3.028436e-01	k: 658869	n:2180000
KS ci ratio: 1.271539e-01	ci left: 4.080671e-04	ci right 4.639161e-04	k: 949	n:2180000
FUT8   2180000 perm   2430 sec   (897 perm/sec)   p_kst 4.353211e-04   p_cons 3.022335e-01   p_joint 4.353211e-04

Joint ci ratio: 1.267542e-01	ci left: 4.088565e-04	ci right 4.646245e-04	k: 955	n:2190000
Cons ci ratio: 4.024803e-03	ci left: 3.016279e-01	ci right 3.028448e-01	k: 661897	n:2190000
KS ci ratio: 1.267542e-01	ci left: 4.088565e-04	ci right 4.646245e-04	k: 955	n:2190000
FUT8   2190000 perm   2450 sec   (894 perm/sec)   p_kst 4.360731e-04   p_cons 3.022361e-01   p_joint 4.360731e-04

Joint ci ratio: 1.264898e-01	ci left: 4.087586e-04	ci right 4.643883e-04	k: 959	n:2200000
Cons ci ratio: 4.015491e-03	ci left: 3.016455e-01	ci right 3.028596e-01	k: 664955	n:2200000
KS ci ratio: 1.264898e-01	ci left: 4.087586e-04	ci right 4.643883e-04	k: 959	n:2200000
FUT8   2200000 perm   2471 sec   (890 perm/sec)   p_kst 4.359091e-04   p_cons 3.022523e-01   p_joint 4.359091e-04

Joint ci ratio: 1.263583e-01	ci left: 4.077854e-04	ci right 4.632206e-04	k: 961	n:2210000
Cons ci ratio: 4.006265e-03	ci left: 3.016606e-01	ci right 3.028720e-01	k: 668008	n:2210000
KS ci ratio: 1.263583e-01	ci left: 4.077854e-04	ci right 4.632206e-04	k: 961	n:2210000
FUT8   2210000 perm   2491 sec   (887 perm/sec)   p_kst 4.348416e-04   p_cons 3.022661e-01   p_joint 4.348416e-04

Joint ci ratio: 1.262928e-01	ci left: 4.063847e-04	ci right 4.615987e-04	k: 962	n:2220000
Cons ci ratio: 3.996923e-03	ci left: 3.016946e-01	ci right 3.029033e-01	k: 671103	n:2220000
KS ci ratio: 1.262928e-01	ci left: 4.063847e-04	ci right 4.615987e-04	k: 962	n:2220000
FUT8   2220000 perm   2511 sec   (884 perm/sec)   p_kst 4.333333e-04   p_cons 3.022986e-01   p_joint 4.333333e-04

Joint ci ratio: 1.261619e-01	ci left: 4.054309e-04	ci right 4.604539e-04	k: 964	n:2230000
Cons ci ratio: 3.987832e-03	ci left: 3.017085e-01	ci right 3.029145e-01	k: 674154	n:2230000
KS ci ratio: 1.261619e-01	ci left: 4.054309e-04	ci right 4.604539e-04	k: 964	n:2230000
FUT8   2230000 perm   2531 sec   (881 perm/sec)   p_kst 4.322870e-04   p_cons 3.023112e-01   p_joint 4.322870e-04

Joint ci ratio: 1.259013e-01	ci left: 4.053504e-04	ci right 4.602403e-04	k: 968	n:2240000
Cons ci ratio: 3.978627e-03	ci left: 3.017410e-01	ci right 3.029443e-01	k: 677247	n:2240000
KS ci ratio: 1.259013e-01	ci left: 4.053504e-04	ci right 4.602403e-04	k: 968	n:2240000
FUT8   2240000 perm   2553 sec   (878 perm/sec)   p_kst 4.321429e-04   p_cons 3.023424e-01   p_joint 4.321429e-04

Joint ci ratio: 1.257716e-01	ci left: 4.044097e-04	ci right 4.591117e-04	k: 970	n:2250000
Cons ci ratio: 3.969623e-03	ci left: 3.017586e-01	ci right 3.029593e-01	k: 680307	n:2250000
KS ci ratio: 1.257716e-01	ci left: 4.044097e-04	ci right 4.591117e-04	k: 970	n:2250000
FUT8   2250000 perm   2573 sec   (874 perm/sec)   p_kst 4.311111e-04   p_cons 3.023587e-01   p_joint 4.311111e-04

Joint ci ratio: 1.252566e-01	ci left: 4.060490e-04	ci right 4.607311e-04	k: 978	n:2260000
Cons ci ratio: 3.960767e-03	ci left: 3.017667e-01	ci right 3.029648e-01	k: 683346	n:2260000
KS ci ratio: 1.252566e-01	ci left: 4.060490e-04	ci right 4.607311e-04	k: 978	n:2260000
FUT8   2260000 perm   2594 sec   (871 perm/sec)   p_kst 4.327434e-04   p_cons 3.023655e-01   p_joint 4.327434e-04

Joint ci ratio: 1.249379e-01	ci left: 4.063939e-04	ci right 4.609730e-04	k: 983	n:2270000
Cons ci ratio: 3.952089e-03	ci left: 3.017620e-01	ci right 3.029574e-01	k: 686356	n:2270000
KS ci ratio: 1.249379e-01	ci left: 4.063939e-04	ci right 4.609730e-04	k: 983	n:2270000
FUT8   2270000 perm   2616 sec   (868 perm/sec)   p_kst 4.330396e-04   p_cons 3.023595e-01   p_joint 4.330396e-04

Joint ci ratio: 1.244330e-01	ci left: 4.080109e-04	ci right 4.625693e-04	k: 991	n:2280000
Cons ci ratio: 3.943284e-03	ci left: 3.017771e-01	ci right 3.029699e-01	k: 689411	n:2280000
KS ci ratio: 1.244330e-01	ci left: 4.080109e-04	ci right 4.625693e-04	k: 991	n:2280000
FUT8   2280000 perm   2637 sec   (865 perm/sec)   p_kst 4.346491e-04   p_cons 3.023732e-01   p_joint 4.346491e-04

Joint ci ratio: 1.241206e-01	ci left: 4.083447e-04	ci right 4.628006e-04	k: 996	n:2290000
Cons ci ratio: 3.934806e-03	ci left: 3.017633e-01	ci right 3.029534e-01	k: 692400	n:2290000
KS ci ratio: 1.241206e-01	ci left: 4.083447e-04	ci right 4.628006e-04	k: 996	n:2290000
FUT8   2290000 perm   2658 sec   (862 perm/sec)   p_kst 4.349345e-04   p_cons 3.023581e-01   p_joint 4.349345e-04

Joint ci ratio: 1.238724e-01	ci left: 4.082545e-04	ci right 4.625815e-04	k: 1000	n:2300000
Cons ci ratio: 3.926314e-03	ci left: 3.017569e-01	ci right 3.029445e-01	k: 695406	n:2300000
KS ci ratio: 1.238724e-01	ci left: 4.082545e-04	ci right 4.625815e-04	k: 1000	n:2300000
FUT8   2300000 perm   2680 sec   (858 perm/sec)   p_kst 4.347826e-04   p_cons 3.023504e-01   p_joint 4.347826e-04

Joint ci ratio: 1.236872e-01	ci left: 4.077456e-04	ci right 4.619178e-04	k: 1003	n:2310000
Cons ci ratio: 3.917636e-03	ci left: 3.017766e-01	ci right 3.029616e-01	k: 698472	n:2310000
KS ci ratio: 1.236872e-01	ci left: 4.077456e-04	ci right 4.619178e-04	k: 1003	n:2310000
FUT8   2310000 perm   2701 sec   (855 perm/sec)   p_kst 4.341991e-04   p_cons 3.023688e-01   p_joint 4.341991e-04

Joint ci ratio: 1.235642e-01	ci left: 4.068235e-04	ci right 4.608155e-04	k: 1005	n:2320000
Cons ci ratio: 3.909162e-03	ci left: 3.017802e-01	ci right 3.029626e-01	k: 701501	n:2320000
KS ci ratio: 1.235642e-01	ci left: 4.068235e-04	ci right 4.608155e-04	k: 1005	n:2320000
FUT8   2320000 perm   2722 sec   (852 perm/sec)   p_kst 4.331897e-04   p_cons 3.023711e-01   p_joint 4.331897e-04

Joint ci ratio: 1.231365e-01	ci left: 4.079891e-04	ci right 4.619347e-04	k: 1012	n:2330000
Cons ci ratio: 3.901236e-03	ci left: 3.017305e-01	ci right 3.029103e-01	k: 704406	n:2330000
KS ci ratio: 1.231365e-01	ci left: 4.079891e-04	ci right 4.619347e-04	k: 1012	n:2330000
FUT8   2330000 perm   2743 sec   (849 perm/sec)   p_kst 4.343348e-04   p_cons 3.023202e-01   p_joint 4.343348e-04

Joint ci ratio: 1.230152e-01	ci left: 4.070739e-04	ci right 4.608417e-04	k: 1014	n:2340000
Cons ci ratio: 3.892698e-03	ci left: 3.017526e-01	ci right 3.029299e-01	k: 707478	n:2340000
KS ci ratio: 1.230152e-01	ci left: 4.070739e-04	ci right 4.608417e-04	k: 1014	n:2340000
FUT8   2340000 perm   2765 sec   (846 perm/sec)   p_kst 4.333333e-04   p_cons 3.023410e-01   p_joint 4.333333e-04

Joint ci ratio: 1.227735e-01	ci left: 4.069915e-04	ci right 4.606351e-04	k: 1018	n:2350000
Cons ci ratio: 3.884464e-03	ci left: 3.017477e-01	ci right 3.029225e-01	k: 710487	n:2350000
KS ci ratio: 1.227735e-01	ci left: 4.069915e-04	ci right 4.606351e-04	k: 1018	n:2350000
FUT8   2350000 perm   2787 sec   (843 perm/sec)   p_kst 4.331915e-04   p_cons 3.023349e-01   p_joint 4.331915e-04

Joint ci ratio: 1.225932e-01	ci left: 4.064991e-04	ci right 4.599934e-04	k: 1021	n:2360000
Cons ci ratio: 3.876464e-03	ci left: 3.017230e-01	ci right 3.028953e-01	k: 713449	n:2360000
KS ci ratio: 1.225932e-01	ci left: 4.064991e-04	ci right 4.599934e-04	k: 1021	n:2360000
FUT8   2360000 perm   2808 sec   (840 perm/sec)   p_kst 4.326271e-04   p_cons 3.023089e-01   p_joint 4.326271e-04

Joint ci ratio: 1.222944e-01	ci left: 4.068290e-04	ci right 4.602268e-04	k: 1026	n:2370000
Cons ci ratio: 3.868227e-03	ci left: 3.017297e-01	ci right 3.028995e-01	k: 716485	n:2370000
KS ci ratio: 1.222944e-01	ci left: 4.068290e-04	ci right 4.602268e-04	k: 1026	n:2370000
FUT8   2370000 perm   2830 sec   (838 perm/sec)   p_kst 4.329114e-04   p_cons 3.023143e-01   p_joint 4.329114e-04

Joint ci ratio: 1.221162e-01	ci left: 4.063416e-04	ci right 4.595921e-04	k: 1029	n:2380000
Cons ci ratio: 3.860039e-03	ci left: 3.017367e-01	ci right 3.029041e-01	k: 719522	n:2380000
KS ci ratio: 1.221162e-01	ci left: 4.063416e-04	ci right 4.595921e-04	k: 1029	n:2380000
FUT8   2380000 perm   2852 sec   (835 perm/sec)   p_kst 4.323529e-04   p_cons 3.023202e-01   p_joint 4.323529e-04

Joint ci ratio: 1.219388e-01	ci left: 4.058583e-04	ci right 4.589626e-04	k: 1032	n:2390000
Cons ci ratio: 3.851929e-03	ci left: 3.017408e-01	ci right 3.029057e-01	k: 722552	n:2390000
KS ci ratio: 1.219388e-01	ci left: 4.058583e-04	ci right 4.589626e-04	k: 1032	n:2390000
FUT8   2390000 perm   2874 sec   (832 perm/sec)   p_kst 4.317992e-04   p_cons 3.023230e-01   p_joint 4.317992e-04

Joint ci ratio: 1.214693e-01	ci left: 4.073991e-04	ci right 4.604850e-04	k: 1040	n:2400000
Cons ci ratio: 3.843650e-03	ci left: 3.017690e-01	ci right 3.029315e-01	k: 725640	n:2400000
KS ci ratio: 1.214693e-01	ci left: 4.073991e-04	ci right 4.604850e-04	k: 1040	n:2400000
FUT8   2400000 perm   2896 sec   (829 perm/sec)   p_kst 4.333333e-04   p_cons 3.023500e-01   p_joint 4.333333e-04

Joint ci ratio: 1.210628e-01	ci left: 4.085252e-04	ci right 4.615669e-04	k: 1047	n:2410000
Cons ci ratio: 3.835733e-03	ci left: 3.017629e-01	ci right 3.029230e-01	k: 728646	n:2410000
KS ci ratio: 1.210628e-01	ci left: 4.085252e-04	ci right 4.615669e-04	k: 1047	n:2410000
FUT8   2410000 perm   2919 sec   (826 perm/sec)   p_kst 4.344398e-04   p_cons 3.023427e-01   p_joint 4.344398e-04

Joint ci ratio: 1.210052e-01	ci left: 4.072377e-04	ci right 4.600854e-04	k: 1048	n:2420000
Cons ci ratio: 3.827723e-03	ci left: 3.017726e-01	ci right 3.029303e-01	k: 731690	n:2420000
KS ci ratio: 1.210052e-01	ci left: 4.072377e-04	ci right 4.600854e-04	k: 1048	n:2420000
FUT8   2420000 perm   2942 sec   (823 perm/sec)   p_kst 4.330579e-04   p_cons 3.023512e-01   p_joint 4.330579e-04

Joint ci ratio: 1.207752e-01	ci left: 4.071582e-04	ci right 4.598878e-04	k: 1052	n:2430000
Cons ci ratio: 3.819684e-03	ci left: 3.017909e-01	ci right 3.029462e-01	k: 734755	n:2430000
KS ci ratio: 1.207752e-01	ci left: 4.071582e-04	ci right 4.598878e-04	k: 1052	n:2430000
FUT8   2430000 perm   2964 sec   (820 perm/sec)   p_kst 4.329218e-04   p_cons 3.023683e-01   p_joint 4.329218e-04

Joint ci ratio: 1.203757e-01	ci left: 4.082718e-04	ci right 4.609584e-04	k: 1059	n:2440000
Cons ci ratio: 3.811877e-03	ci left: 3.017889e-01	ci right 3.029419e-01	k: 737771	n:2440000
KS ci ratio: 1.203757e-01	ci left: 4.082718e-04	ci right 4.609584e-04	k: 1059	n:2440000
FUT8   2440000 perm   2986 sec   (817 perm/sec)   p_kst 4.340164e-04   p_cons 3.023652e-01   p_joint 4.340164e-04

Joint ci ratio: 1.201492e-01	ci left: 4.081890e-04	ci right 4.607587e-04	k: 1063	n:2450000
Cons ci ratio: 3.804026e-03	ci left: 3.017972e-01	ci right 3.029478e-01	k: 740812	n:2450000
KS ci ratio: 1.201492e-01	ci left: 4.081890e-04	ci right 4.607587e-04	k: 1063	n:2450000
FUT8   2450000 perm   3008 sec   (814 perm/sec)   p_kst 4.338776e-04   p_cons 3.023722e-01   p_joint 4.338776e-04

Joint ci ratio: 1.199240e-01	ci left: 4.081069e-04	ci right 4.605605e-04	k: 1067	n:2460000
Cons ci ratio: 3.796677e-03	ci left: 3.017550e-01	ci right 3.029032e-01	k: 743729	n:2460000
KS ci ratio: 1.199240e-01	ci left: 4.081069e-04	ci right 4.605605e-04	k: 1067	n:2460000
FUT8   2460000 perm   3031 sec   (812 perm/sec)   p_kst 4.337398e-04   p_cons 3.023289e-01   p_joint 4.337398e-04

Joint ci ratio: 1.198119e-01	ci left: 4.072400e-04	ci right 4.595299e-04	k: 1069	n:2470000
Cons ci ratio: 3.788767e-03	ci left: 3.017803e-01	ci right 3.029262e-01	k: 746812	n:2470000
KS ci ratio: 1.198119e-01	ci left: 4.072400e-04	ci right 4.595299e-04	k: 1069	n:2470000
FUT8   2470000 perm   3053 sec   (809 perm/sec)   p_kst 4.327935e-04   p_cons 3.023530e-01   p_joint 4.327935e-04

Joint ci ratio: 1.197002e-01	ci left: 4.063802e-04	ci right 4.585075e-04	k: 1071	n:2480000
Cons ci ratio: 3.781379e-03	ci left: 3.017526e-01	ci right 3.028962e-01	k: 749764	n:2480000
KS ci ratio: 1.197002e-01	ci left: 4.063802e-04	ci right 4.585075e-04	k: 1071	n:2480000
FUT8   2480000 perm   3076 sec   (806 perm/sec)   p_kst 4.318548e-04   p_cons 3.023242e-01   p_joint 4.318548e-04

Joint ci ratio: 1.193112e-01	ci left: 4.074754e-04	ci right 4.595614e-04	k: 1078	n:2490000
Cons ci ratio: 3.773879e-03	ci left: 3.017424e-01	ci right 3.028837e-01	k: 752759	n:2490000
KS ci ratio: 1.193112e-01	ci left: 4.074754e-04	ci right 4.595614e-04	k: 1078	n:2490000
FUT8   2490000 perm   3099 sec   (804 perm/sec)   p_kst 4.329317e-04   p_cons 3.023129e-01   p_joint 4.329317e-04

Joint ci ratio: 1.191457e-01	ci left: 4.070097e-04	ci right 4.589589e-04	k: 1081	n:2500000
Cons ci ratio: 3.766060e-03	ci left: 3.017731e-01	ci right 3.029121e-01	k: 755856	n:2500000
KS ci ratio: 1.191457e-01	ci left: 4.070097e-04	ci right 4.589589e-04	k: 1081	n:2500000
FUT8   2500000 perm   3122 sec   (801 perm/sec)   p_kst 4.324000e-04   p_cons 3.023424e-01   p_joint 4.324000e-04

Joint ci ratio: 1.189261e-01	ci left: 4.069343e-04	ci right 4.587714e-04	k: 1085	n:2510000
Cons ci ratio: 3.758524e-03	ci left: 3.017773e-01	ci right 3.029140e-01	k: 758887	n:2510000
KS ci ratio: 1.189261e-01	ci left: 4.069343e-04	ci right 4.587714e-04	k: 1085	n:2510000
FUT8   2510000 perm   3145 sec   (798 perm/sec)   p_kst 4.322709e-04   p_cons 3.023454e-01   p_joint 4.322709e-04

Joint ci ratio: 1.183282e-01	ci left: 4.095551e-04	ci right 4.614454e-04	k: 1096	n:2520000
Cons ci ratio: 3.751131e-03	ci left: 3.017703e-01	ci right 3.029048e-01	k: 761890	n:2520000
KS ci ratio: 1.183282e-01	ci left: 4.095551e-04	ci right 4.614454e-04	k: 1096	n:2520000
FUT8   2520000 perm   3168 sec   (795 perm/sec)   p_kst 4.349206e-04   p_cons 3.023373e-01   p_joint 4.349206e-04

Joint ci ratio: 1.180058e-01	ci left: 4.102377e-04	ci right 4.620631e-04	k: 1102	n:2530000
Cons ci ratio: 3.743768e-03	ci left: 3.017649e-01	ci right 3.028972e-01	k: 764897	n:2530000
KS ci ratio: 1.180058e-01	ci left: 4.102377e-04	ci right 4.620631e-04	k: 1102	n:2530000
FUT8   2530000 perm   3191 sec   (793 perm/sec)   p_kst 4.355731e-04   p_cons 3.023308e-01   p_joint 4.355731e-04

Joint ci ratio: 1.177925e-01	ci left: 4.101510e-04	ci right 4.618652e-04	k: 1106	n:2540000
Cons ci ratio: 3.736371e-03	ci left: 3.017683e-01	ci right 3.028983e-01	k: 767926	n:2540000
KS ci ratio: 1.177925e-01	ci left: 4.101510e-04	ci right 4.618652e-04	k: 1106	n:2540000
FUT8   2540000 perm   3214 sec   (790 perm/sec)   p_kst 4.354331e-04   p_cons 3.023331e-01   p_joint 4.354331e-04

Joint ci ratio: 1.172639e-01	ci left: 4.123489e-04	ci right 4.640907e-04	k: 1116	n:2550000
Cons ci ratio: 3.729205e-03	ci left: 3.017505e-01	ci right 3.028782e-01	k: 770901	n:2550000
KS ci ratio: 1.172639e-01	ci left: 4.123489e-04	ci right 4.640907e-04	k: 1116	n:2550000
FUT8   2550000 perm   3238 sec   (788 perm/sec)   p_kst 4.376471e-04   p_cons 3.023141e-01   p_joint 4.376471e-04

Joint ci ratio: 1.170545e-01	ci left: 4.122548e-04	ci right 4.638861e-04	k: 1120	n:2560000
Cons ci ratio: 3.721664e-03	ci left: 3.017800e-01	ci right 3.029056e-01	k: 773997	n:2560000
KS ci ratio: 1.170545e-01	ci left: 4.122548e-04	ci right 4.638861e-04	k: 1120	n:2560000
FUT8   2560000 perm   3262 sec   (785 perm/sec)   p_kst 4.375000e-04   p_cons 3.023426e-01   p_joint 4.375000e-04

Joint ci ratio: 1.168982e-01	ci left: 4.117839e-04	ci right 4.632826e-04	k: 1123	n:2570000
Cons ci ratio: 3.714465e-03	ci left: 3.017755e-01	ci right 3.028989e-01	k: 777006	n:2570000
KS ci ratio: 1.168982e-01	ci left: 4.117839e-04	ci right 4.632826e-04	k: 1123	n:2570000
FUT8   2570000 perm   3286 sec   (782 perm/sec)   p_kst 4.369650e-04   p_cons 3.023370e-01   p_joint 4.369650e-04

Joint ci ratio: 1.166908e-01	ci left: 4.116929e-04	ci right 4.630826e-04	k: 1127	n:2580000
Cons ci ratio: 3.707554e-03	ci left: 3.017431e-01	ci right 3.028643e-01	k: 779943	n:2580000
KS ci ratio: 1.166908e-01	ci left: 4.116929e-04	ci right 4.630826e-04	k: 1127	n:2580000
FUT8   2580000 perm   3309 sec   (780 perm/sec)   p_kst 4.368217e-04   p_cons 3.023035e-01   p_joint 4.368217e-04

Joint ci ratio: 1.165359e-01	ci left: 4.112279e-04	ci right 4.624867e-04	k: 1130	n:2590000
Cons ci ratio: 3.700366e-03	ci left: 3.017469e-01	ci right 3.028659e-01	k: 782973	n:2590000
KS ci ratio: 1.165359e-01	ci left: 4.112279e-04	ci right 4.624867e-04	k: 1130	n:2590000
FUT8   2590000 perm   3333 sec   (777 perm/sec)   p_kst 4.362934e-04   p_cons 3.023062e-01   p_joint 4.362934e-04

Joint ci ratio: 1.162792e-01	ci left: 4.115133e-04	ci right 4.626869e-04	k: 1135	n:2600000
Cons ci ratio: 3.693365e-03	ci left: 3.017341e-01	ci right 3.028509e-01	k: 785960	n:2600000
KS ci ratio: 1.162792e-01	ci left: 4.115133e-04	ci right 4.626869e-04	k: 1135	n:2600000
FUT8   2600000 perm   3358 sec   (774 perm/sec)   p_kst 4.365385e-04   p_cons 3.022923e-01   p_joint 4.365385e-04

Joint ci ratio: 1.160750e-01	ci left: 4.114247e-04	ci right 4.624913e-04	k: 1139	n:2610000
Cons ci ratio: 3.686229e-03	ci left: 3.017413e-01	ci right 3.028560e-01	k: 788999	n:2610000
KS ci ratio: 1.160750e-01	ci left: 4.114247e-04	ci right 4.624913e-04	k: 1139	n:2610000
FUT8   2610000 perm   3381 sec   (772 perm/sec)   p_kst 4.363985e-04   p_cons 3.022985e-01   p_joint 4.363985e-04

Joint ci ratio: 1.158719e-01	ci left: 4.113368e-04	ci right 4.622970e-04	k: 1143	n:2620000
Cons ci ratio: 3.679473e-03	ci left: 3.017096e-01	ci right 3.028221e-01	k: 791936	n:2620000
KS ci ratio: 1.158719e-01	ci left: 4.113368e-04	ci right 4.622970e-04	k: 1143	n:2620000
FUT8   2620000 perm   3405 sec   (769 perm/sec)   p_kst 4.362595e-04   p_cons 3.022656e-01   p_joint 4.362595e-04

Joint ci ratio: 1.154187e-01	ci left: 4.130959e-04	ci right 4.640602e-04	k: 1152	n:2630000
Cons ci ratio: 3.672666e-03	ci left: 3.016884e-01	ci right 3.027988e-01	k: 794900	n:2630000
KS ci ratio: 1.154187e-01	ci left: 4.130959e-04	ci right 4.640602e-04	k: 1152	n:2630000
FUT8   2630000 perm   3430 sec   (767 perm/sec)   p_kst 4.380228e-04   p_cons 3.022433e-01   p_joint 4.380228e-04

Joint ci ratio: 1.153687e-01	ci left: 4.118989e-04	ci right 4.626922e-04	k: 1153	n:2640000
Cons ci ratio: 3.665800e-03	ci left: 3.016783e-01	ci right 3.027866e-01	k: 797893	n:2640000
KS ci ratio: 1.153687e-01	ci left: 4.118989e-04	ci right 4.626922e-04	k: 1153	n:2640000
FUT8   2640000 perm   3454 sec   (764 perm/sec)   p_kst 4.367424e-04   p_cons 3.022322e-01   p_joint 4.367424e-04

Joint ci ratio: 1.153189e-01	ci left: 4.107111e-04	ci right 4.613344e-04	k: 1154	n:2650000
Cons ci ratio: 3.659143e-03	ci left: 3.016486e-01	ci right 3.027548e-01	k: 800834	n:2650000
KS ci ratio: 1.153189e-01	ci left: 4.107111e-04	ci right 4.613344e-04	k: 1154	n:2650000
FUT8   2650000 perm   3479 sec   (762 perm/sec)   p_kst 4.354717e-04   p_cons 3.022015e-01   p_joint 4.354717e-04

Joint ci ratio: 1.150700e-01	ci left: 4.109926e-04	ci right 4.615339e-04	k: 1159	n:2660000
Cons ci ratio: 3.652376e-03	ci left: 3.016362e-01	ci right 3.027402e-01	k: 803820	n:2660000
KS ci ratio: 1.150700e-01	ci left: 4.109926e-04	ci right 4.615339e-04	k: 1159	n:2660000
FUT8   2660000 perm   3503 sec   (759 perm/sec)   p_kst 4.357143e-04   p_cons 3.021880e-01   p_joint 4.357143e-04

Joint ci ratio: 1.147736e-01	ci left: 4.116359e-04	ci right 4.621171e-04	k: 1165	n:2670000
Cons ci ratio: 3.645656e-03	ci left: 3.016226e-01	ci right 3.027246e-01	k: 806803	n:2670000
KS ci ratio: 1.147736e-01	ci left: 4.116359e-04	ci right 4.621171e-04	k: 1165	n:2670000
FUT8   2670000 perm   3528 sec   (757 perm/sec)   p_kst 4.363296e-04   p_cons 3.021734e-01   p_joint 4.363296e-04

Joint ci ratio: 1.146753e-01	ci left: 4.108248e-04	ci right 4.611604e-04	k: 1167	n:2680000
Cons ci ratio: 3.638606e-03	ci left: 3.016517e-01	ci right 3.027517e-01	k: 809900	n:2680000
KS ci ratio: 1.146753e-01	ci left: 4.108248e-04	ci right 4.611604e-04	k: 1167	n:2680000
FUT8   2680000 perm   3551 sec   (755 perm/sec)   p_kst 4.354478e-04   p_cons 3.022015e-01   p_joint 4.354478e-04

Joint ci ratio: 1.143332e-01	ci left: 4.118253e-04	ci right 4.621228e-04	k: 1174	n:2690000
Cons ci ratio: 3.631670e-03	ci left: 3.016721e-01	ci right 3.027700e-01	k: 812974	n:2690000
KS ci ratio: 1.143332e-01	ci left: 4.118253e-04	ci right 4.621228e-04	k: 1174	n:2690000
FUT8   2690000 perm   3576 sec   (752 perm/sec)   p_kst 4.364312e-04   p_cons 3.022208e-01   p_joint 4.364312e-04

Joint ci ratio: 1.141875e-01	ci left: 4.113793e-04	ci right 4.615541e-04	k: 1177	n:2700000
Cons ci ratio: 3.625171e-03	ci left: 3.016460e-01	ci right 3.027418e-01	k: 815923	n:2700000
KS ci ratio: 1.141875e-01	ci left: 4.113793e-04	ci right 4.615541e-04	k: 1177	n:2700000
FUT8   2700000 perm   3601 sec   (750 perm/sec)   p_kst 4.359259e-04   p_cons 3.021937e-01   p_joint 4.359259e-04

Joint ci ratio: 1.140424e-01	ci left: 4.109367e-04	ci right 4.609895e-04	k: 1180	n:2710000
Cons ci ratio: 3.618274e-03	ci left: 3.016706e-01	ci right 3.027645e-01	k: 819009	n:2710000
KS ci ratio: 1.140424e-01	ci left: 4.109367e-04	ci right 4.609895e-04	k: 1180	n:2710000
FUT8   2710000 perm   3626 sec   (747 perm/sec)   p_kst 4.354244e-04   p_cons 3.022173e-01   p_joint 4.354244e-04

Joint ci ratio: 1.137538e-01	ci left: 4.115690e-04	ci right 4.615634e-04	k: 1186	n:2720000
Cons ci ratio: 3.611636e-03	ci left: 3.016694e-01	ci right 3.027612e-01	k: 822025	n:2720000
KS ci ratio: 1.137538e-01	ci left: 4.115690e-04	ci right 4.615634e-04	k: 1186	n:2720000
FUT8   2720000 perm   3651 sec   (745 perm/sec)   p_kst 4.360294e-04   p_cons 3.022151e-01   p_joint 4.360294e-04

Joint ci ratio: 1.136103e-01	ci left: 4.111291e-04	ci right 4.610028e-04	k: 1189	n:2730000
Cons ci ratio: 3.605053e-03	ci left: 3.016659e-01	ci right 3.027557e-01	k: 825035	n:2730000
KS ci ratio: 1.136103e-01	ci left: 4.111291e-04	ci right 4.610028e-04	k: 1189	n:2730000
FUT8   2730000 perm   3676 sec   (743 perm/sec)   p_kst 4.355311e-04   p_cons 3.022106e-01   p_joint 4.355311e-04

Joint ci ratio: 1.134674e-01	ci left: 4.106924e-04	ci right 4.604463e-04	k: 1192	n:2740000
Cons ci ratio: 3.598481e-03	ci left: 3.016654e-01	ci right 3.027533e-01	k: 828053	n:2740000
KS ci ratio: 1.134674e-01	ci left: 4.106924e-04	ci right 4.604463e-04	k: 1192	n:2740000
FUT8   2740000 perm   3702 sec   (740 perm/sec)   p_kst 4.350365e-04   p_cons 3.022091e-01   p_joint 4.350365e-04

Joint ci ratio: 1.132777e-01	ci left: 4.106123e-04	ci right 4.602677e-04	k: 1196	n:2750000
Cons ci ratio: 3.591763e-03	ci left: 3.016864e-01	ci right 3.027722e-01	k: 831130	n:2750000
KS ci ratio: 1.132777e-01	ci left: 4.106123e-04	ci right 4.602677e-04	k: 1196	n:2750000
FUT8   2750000 perm   3726 sec   (738 perm/sec)   p_kst 4.349091e-04   p_cons 3.022291e-01   p_joint 4.349091e-04

Joint ci ratio: 1.130418e-01	ci left: 4.108848e-04	ci right 4.604630e-04	k: 1201	n:2760000
Cons ci ratio: 3.585433e-03	ci left: 3.016659e-01	ci right 3.027498e-01	k: 834093	n:2760000
KS ci ratio: 1.130418e-01	ci left: 4.108848e-04	ci right 4.604630e-04	k: 1201	n:2760000
FUT8   2760000 perm   3752 sec   (736 perm/sec)   p_kst 4.351449e-04   p_cons 3.022076e-01   p_joint 4.351449e-04

Joint ci ratio: 1.129949e-01	ci left: 4.097523e-04	ci right 4.591719e-04	k: 1202	n:2770000
Cons ci ratio: 3.579087e-03	ci left: 3.016513e-01	ci right 3.027332e-01	k: 837072	n:2770000
KS ci ratio: 1.129949e-01	ci left: 4.097523e-04	ci right 4.591719e-04	k: 1202	n:2770000
FUT8   2770000 perm   3777 sec   (733 perm/sec)   p_kst 4.339350e-04   p_cons 3.021921e-01   p_joint 4.339350e-04

Joint ci ratio: 1.128543e-01	ci left: 4.093270e-04	ci right 4.586298e-04	k: 1205	n:2780000
Cons ci ratio: 3.572665e-03	ci left: 3.016498e-01	ci right 3.027298e-01	k: 840087	n:2780000
KS ci ratio: 1.128543e-01	ci left: 4.093270e-04	ci right 4.586298e-04	k: 1205	n:2780000
FUT8   2780000 perm   3803 sec   (731 perm/sec)   p_kst 4.334532e-04   p_cons 3.021896e-01   p_joint 4.334532e-04

Joint ci ratio: 1.127142e-01	ci left: 4.089048e-04	ci right 4.580915e-04	k: 1208	n:2790000
Cons ci ratio: 3.566429e-03	ci left: 3.016304e-01	ci right 3.027084e-01	k: 843052	n:2790000
KS ci ratio: 1.127142e-01	ci left: 4.089048e-04	ci right 4.580915e-04	k: 1208	n:2790000
FUT8   2790000 perm   3829 sec   (729 perm/sec)   p_kst 4.329749e-04   p_cons 3.021692e-01   p_joint 4.329749e-04

Joint ci ratio: 1.122969e-01	ci left: 4.105683e-04	ci right 4.597602e-04	k: 1217	n:2800000
Cons ci ratio: 3.560075e-03	ci left: 3.016290e-01	ci right 3.027050e-01	k: 846067	n:2800000
KS ci ratio: 1.122969e-01	ci left: 4.105683e-04	ci right 4.597602e-04	k: 1217	n:2800000
FUT8   2800000 perm   3855 sec   (726 perm/sec)   p_kst 4.346429e-04   p_cons 3.021668e-01   p_joint 4.346429e-04

Joint ci ratio: 1.121589e-01	ci left: 4.101449e-04	ci right 4.592216e-04	k: 1220	n:2810000
Cons ci ratio: 3.553734e-03	ci left: 3.016300e-01	ci right 3.027042e-01	k: 849089	n:2810000
KS ci ratio: 1.121589e-01	ci left: 4.101449e-04	ci right 4.592216e-04	k: 1220	n:2810000
FUT8   2810000 perm   3882 sec   (724 perm/sec)   p_kst 4.341637e-04   p_cons 3.021669e-01   p_joint 4.341637e-04

Joint ci ratio: 1.121590e-01	ci left: 4.086904e-04	ci right 4.575932e-04	k: 1220	n:2820000
Cons ci ratio: 3.547495e-03	ci left: 3.016229e-01	ci right 3.026952e-01	k: 852088	n:2820000
KS ci ratio: 1.121590e-01	ci left: 4.086904e-04	ci right 4.575932e-04	k: 1220	n:2820000
FUT8   2820000 perm   3909 sec   (721 perm/sec)   p_kst 4.326241e-04   p_cons 3.021589e-01   p_joint 4.326241e-04

Joint ci ratio: 1.118388e-01	ci left: 4.096505e-04	ci right 4.585190e-04	k: 1227	n:2830000
Cons ci ratio: 3.541481e-03	ci left: 3.015930e-01	ci right 3.026633e-01	k: 855022	n:2830000
KS ci ratio: 1.118388e-01	ci left: 4.096505e-04	ci right 4.585190e-04	k: 1227	n:2830000
FUT8   2830000 perm   3937 sec   (719 perm/sec)   p_kst 4.335689e-04   p_cons 3.021279e-01   p_joint 4.335689e-04

Joint ci ratio: 1.114762e-01	ci left: 4.109463e-04	ci right 4.598000e-04	k: 1235	n:2840000
Cons ci ratio: 3.535339e-03	ci left: 3.015822e-01	ci right 3.026506e-01	k: 858010	n:2840000
KS ci ratio: 1.114762e-01	ci left: 4.109463e-04	ci right 4.598000e-04	k: 1235	n:2840000
FUT8   2840000 perm   3965 sec   (716 perm/sec)   p_kst 4.348592e-04   p_cons 3.021162e-01   p_joint 4.348592e-04

Joint ci ratio: 1.113412e-01	ci left: 4.105277e-04	ci right 4.592686e-04	k: 1238	n:2850000
Cons ci ratio: 3.529032e-03	ci left: 3.015950e-01	ci right 3.026615e-01	k: 861065	n:2850000
KS ci ratio: 1.113412e-01	ci left: 4.105277e-04	ci right 4.592686e-04	k: 1238	n:2850000
FUT8   2850000 perm   3992 sec   (714 perm/sec)   p_kst 4.343860e-04   p_cons 3.021281e-01   p_joint 4.343860e-04

Joint ci ratio: 1.111172e-01	ci left: 4.107919e-04	ci right 4.594596e-04	k: 1243	n:2860000
Cons ci ratio: 3.522957e-03	ci left: 3.015839e-01	ci right 3.026486e-01	k: 864052	n:2860000
KS ci ratio: 1.111172e-01	ci left: 4.107919e-04	ci right 4.594596e-04	k: 1243	n:2860000
FUT8   2860000 perm   4018 sec   (712 perm/sec)   p_kst 4.346154e-04   p_cons 3.021161e-01   p_joint 4.346154e-04

Joint ci ratio: 1.110726e-01	ci left: 4.096993e-04	ci right 4.582169e-04	k: 1244	n:2870000
Cons ci ratio: 3.516972e-03	ci left: 3.015660e-01	ci right 3.026288e-01	k: 867019	n:2870000
KS ci ratio: 1.110726e-01	ci left: 4.096993e-04	ci right 4.582169e-04	k: 1244	n:2870000
FUT8   2870000 perm   4044 sec   (710 perm/sec)   p_kst 4.334495e-04   p_cons 3.020972e-01   p_joint 4.334495e-04

Joint ci ratio: 1.108059e-01	ci left: 4.103023e-04	ci right 4.587669e-04	k: 1250	n:2880000
Cons ci ratio: 3.510855e-03	ci left: 3.015676e-01	ci right 3.026286e-01	k: 870042	n:2880000
KS ci ratio: 1.108059e-01	ci left: 4.103023e-04	ci right 4.587669e-04	k: 1250	n:2880000
FUT8   2880000 perm   4073 sec   (707 perm/sec)   p_kst 4.340278e-04   p_cons 3.020979e-01   p_joint 4.340278e-04

Joint ci ratio: 1.105851e-01	ci left: 4.105648e-04	ci right 4.589575e-04	k: 1255	n:2890000
Cons ci ratio: 3.504729e-03	ci left: 3.015741e-01	ci right 3.026332e-01	k: 873079	n:2890000
KS ci ratio: 1.105851e-01	ci left: 4.105648e-04	ci right 4.589575e-04	k: 1255	n:2890000
FUT8   2890000 perm   4101 sec   (705 perm/sec)   p_kst 4.342561e-04   p_cons 3.021035e-01   p_joint 4.342561e-04

Joint ci ratio: 1.101039e-01	ci left: 4.128375e-04	ci right 4.612726e-04	k: 1266	n:2900000
Cons ci ratio: 3.498716e-03	ci left: 3.015709e-01	ci right 3.026282e-01	k: 876088	n:2900000
KS ci ratio: 1.101039e-01	ci left: 4.128375e-04	ci right 4.612726e-04	k: 1266	n:2900000
FUT8   2900000 perm   4128 sec   (702 perm/sec)   p_kst 4.365517e-04   p_cons 3.020993e-01   p_joint 4.365517e-04

Joint ci ratio: 1.099738e-01	ci left: 4.124213e-04	ci right 4.607468e-04	k: 1269	n:2910000
Cons ci ratio: 3.492744e-03	ci left: 3.015663e-01	ci right 3.026217e-01	k: 879093	n:2910000
KS ci ratio: 1.099738e-01	ci left: 4.124213e-04	ci right 4.607468e-04	k: 1269	n:2910000
FUT8   2910000 perm   4155 sec   (700 perm/sec)   p_kst 4.360825e-04   p_cons 3.020938e-01   p_joint 4.360825e-04

Joint ci ratio: 1.098011e-01	ci left: 4.123411e-04	ci right 4.605764e-04	k: 1273	n:2920000
Cons ci ratio: 3.486877e-03	ci left: 3.015528e-01	ci right 3.026065e-01	k: 882072	n:2920000
KS ci ratio: 1.098011e-01	ci left: 4.123411e-04	ci right 4.605764e-04	k: 1273	n:2920000
FUT8   2920000 perm   4182 sec   (698 perm/sec)   p_kst 4.359589e-04   p_cons 3.020795e-01   p_joint 4.359589e-04

Joint ci ratio: 1.096720e-01	ci left: 4.119296e-04	ci right 4.600564e-04	k: 1276	n:2930000
Cons ci ratio: 3.480707e-03	ci left: 3.015797e-01	ci right 3.026316e-01	k: 885169	n:2930000
KS ci ratio: 1.096720e-01	ci left: 4.119296e-04	ci right 4.600564e-04	k: 1276	n:2930000
FUT8   2930000 perm   4209 sec   (696 perm/sec)   p_kst 4.354949e-04   p_cons 3.021055e-01   p_joint 4.354949e-04

Joint ci ratio: 1.093726e-01	ci left: 4.128442e-04	ci right 4.609377e-04	k: 1283	n:2940000
Cons ci ratio: 3.474749e-03	ci left: 3.015847e-01	ci right 3.026348e-01	k: 888202	n:2940000
KS ci ratio: 1.093726e-01	ci left: 4.128442e-04	ci right 4.609377e-04	k: 1283	n:2940000
FUT8   2940000 perm   4238 sec   (694 perm/sec)   p_kst 4.363946e-04   p_cons 3.021095e-01   p_joint 4.363946e-04

Joint ci ratio: 1.091179e-01	ci left: 4.134231e-04	ci right 4.614647e-04	k: 1289	n:2950000
Cons ci ratio: 3.468838e-03	ci left: 3.015876e-01	ci right 3.026359e-01	k: 891229	n:2950000
KS ci ratio: 1.091179e-01	ci left: 4.134231e-04	ci right 4.614647e-04	k: 1289	n:2950000
FUT8   2950000 perm   4269 sec   (691 perm/sec)   p_kst 4.369492e-04   p_cons 3.021115e-01   p_joint 4.369492e-04

Joint ci ratio: 1.086138e-01	ci left: 4.159701e-04	ci right 4.640700e-04	k: 1301	n:2960000
Cons ci ratio: 3.462927e-03	ci left: 3.015942e-01	ci right 3.026407e-01	k: 894267	n:2960000
KS ci ratio: 1.086138e-01	ci left: 4.159701e-04	ci right 4.640700e-04	k: 1301	n:2960000
FUT8   2960000 perm   4296 sec   (689 perm/sec)   p_kst 4.395270e-04   p_cons 3.021172e-01   p_joint 4.395270e-04

Joint ci ratio: 1.085722e-01	ci left: 4.148971e-04	ci right 4.628534e-04	k: 1302	n:2970000
Cons ci ratio: 3.457173e-03	ci left: 3.015852e-01	ci right 3.026300e-01	k: 897259	n:2970000
KS ci ratio: 1.085722e-01	ci left: 4.148971e-04	ci right 4.628534e-04	k: 1302	n:2970000
FUT8   2970000 perm   4323 sec   (687 perm/sec)   p_kst 4.383838e-04   p_cons 3.021074e-01   p_joint 4.383838e-04

Joint ci ratio: 1.084474e-01	ci left: 4.144842e-04	ci right 4.623342e-04	k: 1305	n:2980000
Cons ci ratio: 3.451425e-03	ci left: 3.015790e-01	ci right 3.026220e-01	k: 900259	n:2980000
KS ci ratio: 1.084474e-01	ci left: 4.144842e-04	ci right 4.623342e-04	k: 1305	n:2980000
FUT8   2980000 perm   4351 sec   (685 perm/sec)   p_kst 4.379195e-04   p_cons 3.021003e-01   p_joint 4.379195e-04

Joint ci ratio: 1.083231e-01	ci left: 4.140741e-04	ci right 4.618185e-04	k: 1308	n:2990000
Cons ci ratio: 3.445706e-03	ci left: 3.015729e-01	ci right 3.026141e-01	k: 903259	n:2990000
KS ci ratio: 1.083231e-01	ci left: 4.140741e-04	ci right 4.618185e-04	k: 1308	n:2990000
FUT8   2990000 perm   4379 sec   (683 perm/sec)   p_kst 4.374582e-04   p_cons 3.020933e-01   p_joint 4.374582e-04

Joint ci ratio: 1.081580e-01	ci left: 4.139911e-04	ci right 4.616485e-04	k: 1312	n:3000000
Cons ci ratio: 3.440097e-03	ci left: 3.015568e-01	ci right 3.025963e-01	k: 906229	n:3000000
KS ci ratio: 1.081580e-01	ci left: 4.139911e-04	ci right 4.616485e-04	k: 1312	n:3000000
FUT8   3000000 perm   4407 sec   (681 perm/sec)   p_kst 4.373333e-04   p_cons 3.020763e-01   p_joint 4.373333e-04

Joint ci ratio: 1.078708e-01	ci left: 4.148785e-04	ci right 4.625031e-04	k: 1319	n:3010000
Cons ci ratio: 3.434553e-03	ci left: 3.015361e-01	ci right 3.025739e-01	k: 909185	n:3010000
KS ci ratio: 1.078708e-01	ci left: 4.148785e-04	ci right 4.625031e-04	k: 1319	n:3010000
FUT8   3010000 perm   4435 sec   (679 perm/sec)   p_kst 4.382060e-04   p_cons 3.020548e-01   p_joint 4.382060e-04

Joint ci ratio: 1.076264e-01	ci left: 4.154379e-04	ci right 4.630119e-04	k: 1325	n:3020000
Cons ci ratio: 3.429114e-03	ci left: 3.015060e-01	ci right 3.025420e-01	k: 912112	n:3020000
KS ci ratio: 1.076264e-01	ci left: 4.154379e-04	ci right 4.630119e-04	k: 1325	n:3020000
FUT8   3020000 perm   4462 sec   (677 perm/sec)   p_kst 4.387417e-04   p_cons 3.020238e-01   p_joint 4.387417e-04

Joint ci ratio: 1.073837e-01	ci left: 4.159938e-04	ci right 4.635173e-04	k: 1331	n:3030000
Cons ci ratio: 3.423486e-03	ci left: 3.015025e-01	ci right 3.025368e-01	k: 915119	n:3030000
KS ci ratio: 1.073837e-01	ci left: 4.159938e-04	ci right 4.635173e-04	k: 1331	n:3030000
FUT8   3030000 perm   4490 sec   (675 perm/sec)   p_kst 4.392739e-04   p_cons 3.020195e-01   p_joint 4.392739e-04

Joint ci ratio: 1.073032e-01	ci left: 4.152656e-04	ci right 4.626681e-04	k: 1333	n:3040000
Cons ci ratio: 3.417875e-03	ci left: 3.015004e-01	ci right 3.025329e-01	k: 918130	n:3040000
KS ci ratio: 1.073032e-01	ci left: 4.152656e-04	ci right 4.626681e-04	k: 1333	n:3040000
FUT8   3040000 perm   4518 sec   (673 perm/sec)   p_kst 4.384868e-04   p_cons 3.020164e-01   p_joint 4.384868e-04

Joint ci ratio: 1.071828e-01	ci left: 4.148613e-04	ci right 4.621611e-04	k: 1336	n:3050000
Cons ci ratio: 3.412358e-03	ci left: 3.014900e-01	ci right 3.025209e-01	k: 921116	n:3050000
KS ci ratio: 1.071828e-01	ci left: 4.148613e-04	ci right 4.621611e-04	k: 1336	n:3050000
FUT8   3050000 perm   4546 sec   (671 perm/sec)   p_kst 4.380328e-04   p_cons 3.020052e-01   p_joint 4.380328e-04

Joint ci ratio: 1.069033e-01	ci left: 4.157319e-04	ci right 4.629996e-04	k: 1343	n:3060000
Cons ci ratio: 3.406686e-03	ci left: 3.015023e-01	ci right 3.025314e-01	k: 924171	n:3060000
KS ci ratio: 1.069033e-01	ci left: 4.157319e-04	ci right 4.629996e-04	k: 1343	n:3060000
FUT8   3060000 perm   4574 sec   (669 perm/sec)   p_kst 4.388889e-04   p_cons 3.020167e-01   p_joint 4.388889e-04

Joint ci ratio: 1.068239e-01	ci left: 4.150118e-04	ci right 4.621603e-04	k: 1345	n:3070000
Cons ci ratio: 3.401052e-03	ci left: 3.015131e-01	ci right 3.025407e-01	k: 927222	n:3070000
KS ci ratio: 1.068239e-01	ci left: 4.150118e-04	ci right 4.621603e-04	k: 1345	n:3070000
FUT8   3070000 perm   4602 sec   (667 perm/sec)   p_kst 4.381107e-04   p_cons 3.020267e-01   p_joint 4.381107e-04

Joint ci ratio: 1.067050e-01	ci left: 4.146123e-04	ci right 4.616599e-04	k: 1348	n:3080000
Cons ci ratio: 3.395561e-03	ci left: 3.015097e-01	ci right 3.025355e-01	k: 930229	n:3080000
KS ci ratio: 1.067050e-01	ci left: 4.146123e-04	ci right 4.616599e-04	k: 1348	n:3080000
FUT8   3080000 perm   4631 sec   (665 perm/sec)   p_kst 4.376623e-04   p_cons 3.020224e-01   p_joint 4.376623e-04

Joint ci ratio: 1.064685e-01	ci left: 4.151605e-04	ci right 4.621593e-04	k: 1354	n:3090000
Cons ci ratio: 3.389888e-03	ci left: 3.015321e-01	ci right 3.025563e-01	k: 933316	n:3090000
KS ci ratio: 1.064685e-01	ci left: 4.151605e-04	ci right 4.621593e-04	k: 1354	n:3090000
FUT8   3090000 perm   4658 sec   (663 perm/sec)   p_kst 4.381877e-04   p_cons 3.020440e-01   p_joint 4.381877e-04

Joint ci ratio: 1.063509e-01	ci left: 4.147633e-04	ci right 4.616620e-04	k: 1357	n:3100000
Cons ci ratio: 3.384596e-03	ci left: 3.015105e-01	ci right 3.025331e-01	k: 936267	n:3100000
KS ci ratio: 1.063509e-01	ci left: 4.147633e-04	ci right 4.616620e-04	k: 1357	n:3100000
FUT8   3100000 perm   4687 sec   (661 perm/sec)   p_kst 4.377419e-04   p_cons 3.020216e-01   p_joint 4.377419e-04

Joint ci ratio: 1.061946e-01	ci left: 4.146816e-04	ci right 4.614979e-04	k: 1361	n:3110000
Cons ci ratio: 3.378878e-03	ci left: 3.015454e-01	ci right 3.025663e-01	k: 939393	n:3110000
KS ci ratio: 1.061946e-01	ci left: 4.146816e-04	ci right 4.614979e-04	k: 1361	n:3110000
FUT8   3110000 perm   4715 sec   (660 perm/sec)   p_kst 4.376206e-04   p_cons 3.020556e-01   p_joint 4.376206e-04

Joint ci ratio: 1.059614e-01	ci left: 4.152246e-04	ci right 4.619928e-04	k: 1367	n:3120000
Cons ci ratio: 3.373447e-03	ci left: 3.015476e-01	ci right 3.025669e-01	k: 942418	n:3120000
KS ci ratio: 1.059614e-01	ci left: 4.152246e-04	ci right 4.619928e-04	k: 1367	n:3120000
FUT8   3120000 perm   4744 sec   (658 perm/sec)   p_kst 4.381410e-04   p_cons 3.020571e-01   p_joint 4.381410e-04

Joint ci ratio: 1.057683e-01	ci left: 4.154531e-04	ci right 4.621565e-04	k: 1372	n:3130000
Cons ci ratio: 3.367915e-03	ci left: 3.015658e-01	ci right 3.025835e-01	k: 945493	n:3130000
KS ci ratio: 1.057683e-01	ci left: 4.154531e-04	ci right 4.621565e-04	k: 1372	n:3130000
FUT8   3130000 perm   4772 sec   (656 perm/sec)   p_kst 4.383387e-04   p_cons 3.020744e-01   p_joint 4.383387e-04

Joint ci ratio: 1.055762e-01	ci left: 4.156803e-04	ci right 4.623191e-04	k: 1377	n:3140000
Cons ci ratio: 3.362664e-03	ci left: 3.015520e-01	ci right 3.025681e-01	k: 948468	n:3140000
KS ci ratio: 1.055762e-01	ci left: 4.156803e-04	ci right 4.623191e-04	k: 1377	n:3140000
FUT8   3140000 perm   4801 sec   (654 perm/sec)   p_kst 4.385350e-04   p_cons 3.020599e-01   p_joint 4.385350e-04

Joint ci ratio: 1.053471e-01	ci left: 4.162152e-04	ci right 4.628064e-04	k: 1383	n:3150000
Cons ci ratio: 3.357271e-03	ci left: 3.015593e-01	ci right 3.025737e-01	k: 951509	n:3150000
KS ci ratio: 1.053471e-01	ci left: 4.162152e-04	ci right 4.628064e-04	k: 1383	n:3150000
FUT8   3150000 perm   4829 sec   (652 perm/sec)   p_kst 4.390476e-04   p_cons 3.020663e-01   p_joint 4.390476e-04

Joint ci ratio: 1.052711e-01	ci left: 4.155143e-04	ci right 4.619914e-04	k: 1385	n:3160000
Cons ci ratio: 3.352054e-03	ci left: 3.015476e-01	ci right 3.025604e-01	k: 954490	n:3160000
KS ci ratio: 1.052711e-01	ci left: 4.155143e-04	ci right 4.619914e-04	k: 1385	n:3160000
FUT8   3160000 perm   4858 sec   (650 perm/sec)   p_kst 4.382911e-04   p_cons 3.020538e-01   p_joint 4.382911e-04

Joint ci ratio: 1.052332e-01	ci left: 4.145107e-04	ci right 4.608578e-04	k: 1386	n:3170000
Cons ci ratio: 3.346874e-03	ci left: 3.015343e-01	ci right 3.025455e-01	k: 957466	n:3170000
KS ci ratio: 1.052332e-01	ci left: 4.145107e-04	ci right 4.608578e-04	k: 1386	n:3170000
FUT8   3170000 perm   4887 sec   (649 perm/sec)   p_kst 4.372240e-04   p_cons 3.020397e-01   p_joint 4.372240e-04

Joint ci ratio: 1.051953e-01	ci left: 4.135134e-04	ci right 4.597313e-04	k: 1387	n:3180000
Cons ci ratio: 3.341661e-03	ci left: 3.015284e-01	ci right 3.025380e-01	k: 960465	n:3180000
KS ci ratio: 1.051953e-01	ci left: 4.135134e-04	ci right 4.597313e-04	k: 1387	n:3180000
FUT8   3180000 perm   4916 sec   (647 perm/sec)   p_kst 4.361635e-04   p_cons 3.020330e-01   p_joint 4.361635e-04

Joint ci ratio: 1.049310e-01	ci left: 4.143538e-04	ci right 4.605421e-04	k: 1394	n:3190000
Cons ci ratio: 3.336378e-03	ci left: 3.015344e-01	ci right 3.025424e-01	k: 963502	n:3190000
KS ci ratio: 1.049310e-01	ci left: 4.143538e-04	ci right 4.605421e-04	k: 1394	n:3190000
FUT8   3190000 perm   4945 sec   (645 perm/sec)   p_kst 4.369906e-04   p_cons 3.020382e-01   p_joint 4.369906e-04

Joint ci ratio: 1.048559e-01	ci left: 4.136675e-04	ci right 4.597443e-04	k: 1396	n:3200000
Cons ci ratio: 3.331164e-03	ci left: 3.015348e-01	ci right 3.025412e-01	k: 966521	n:3200000
KS ci ratio: 1.048559e-01	ci left: 4.136675e-04	ci right 4.597443e-04	k: 1396	n:3200000
FUT8   3200000 perm   4974 sec   (643 perm/sec)   p_kst 4.362500e-04   p_cons 3.020378e-01   p_joint 4.362500e-04

Joint ci ratio: 1.045942e-01	ci left: 4.145024e-04	ci right 4.605498e-04	k: 1403	n:3210000
Cons ci ratio: 3.326203e-03	ci left: 3.015062e-01	ci right 3.025110e-01	k: 969447	n:3210000
KS ci ratio: 1.045942e-01	ci left: 4.145024e-04	ci right 4.605498e-04	k: 1403	n:3210000
FUT8   3210000 perm   5003 sec   (642 perm/sec)   p_kst 4.370717e-04   p_cons 3.020084e-01   p_joint 4.370717e-04

Joint ci ratio: 1.044455e-01	ci left: 4.144249e-04	ci right 4.603943e-04	k: 1407	n:3220000
Cons ci ratio: 3.320954e-03	ci left: 3.015172e-01	ci right 3.025205e-01	k: 972500	n:3220000
KS ci ratio: 1.044455e-01	ci left: 4.144249e-04	ci right 4.603943e-04	k: 1407	n:3220000
FUT8   3220000 perm   5032 sec   (640 perm/sec)   p_kst 4.369565e-04   p_cons 3.020186e-01   p_joint 4.369565e-04

Joint ci ratio: 1.042605e-01	ci left: 4.146495e-04	ci right 4.605573e-04	k: 1412	n:3230000
Cons ci ratio: 3.315917e-03	ci left: 3.015043e-01	ci right 3.025060e-01	k: 975476	n:3230000
KS ci ratio: 1.042605e-01	ci left: 4.146495e-04	ci right 4.605573e-04	k: 1412	n:3230000
FUT8   3230000 perm   5062 sec   (638 perm/sec)   p_kst 4.371517e-04   p_cons 3.020050e-01   p_joint 4.371517e-04

Joint ci ratio: 1.040765e-01	ci left: 4.148727e-04	ci right 4.607192e-04	k: 1417	n:3240000
Cons ci ratio: 3.310643e-03	ci left: 3.015245e-01	ci right 3.025247e-01	k: 978559	n:3240000
KS ci ratio: 1.040765e-01	ci left: 4.148727e-04	ci right 4.607192e-04	k: 1417	n:3240000
FUT8   3240000 perm   5091 sec   (636 perm/sec)   p_kst 4.373457e-04   p_cons 3.020244e-01   p_joint 4.373457e-04

Joint ci ratio: 1.038206e-01	ci left: 4.156940e-04	ci right 4.615114e-04	k: 1424	n:3250000
Cons ci ratio: 3.305575e-03	ci left: 3.015215e-01	ci right 3.025201e-01	k: 981567	n:3250000
KS ci ratio: 1.038206e-01	ci left: 4.156940e-04	ci right 4.615114e-04	k: 1424	n:3250000
FUT8   3250000 perm   5121 sec   (635 perm/sec)   p_kst 4.381538e-04   p_cons 3.020206e-01   p_joint 4.381538e-04

Joint ci ratio: 1.035303e-01	ci left: 4.168093e-04	ci right 4.626133e-04	k: 1432	n:3260000
Cons ci ratio: 3.300466e-03	ci left: 3.015268e-01	ci right 3.025239e-01	k: 984602	n:3260000
KS ci ratio: 1.035303e-01	ci left: 4.168093e-04	ci right 4.626133e-04	k: 1432	n:3260000
FUT8   3260000 perm   5150 sec   (633 perm/sec)   p_kst 4.392638e-04   p_cons 3.020252e-01   p_joint 4.392638e-04

Joint ci ratio: 1.033501e-01	ci left: 4.170241e-04	ci right 4.627672e-04	k: 1437	n:3270000
Cons ci ratio: 3.295569e-03	ci left: 3.015079e-01	ci right 3.025035e-01	k: 987558	n:3270000
KS ci ratio: 1.033501e-01	ci left: 4.170241e-04	ci right 4.627672e-04	k: 1437	n:3270000
FUT8   3270000 perm   5179 sec   (631 perm/sec)   p_kst 4.394495e-04   p_cons 3.020055e-01   p_joint 4.394495e-04

Joint ci ratio: 1.031352e-01	ci left: 4.175347e-04	ci right 4.632328e-04	k: 1443	n:3280000
Cons ci ratio: 3.290511e-03	ci left: 3.015126e-01	ci right 3.025067e-01	k: 990591	n:3280000
KS ci ratio: 1.031352e-01	ci left: 4.175347e-04	ci right 4.632328e-04	k: 1443	n:3280000
FUT8   3280000 perm   5209 sec   (630 perm/sec)   p_kst 4.399390e-04   p_cons 3.020095e-01   p_joint 4.399390e-04

Joint ci ratio: 1.030639e-01	ci left: 4.168579e-04	ci right 4.624484e-04	k: 1445	n:3290000
Cons ci ratio: 3.285611e-03	ci left: 3.015000e-01	ci right 3.024925e-01	k: 993567	n:3290000
KS ci ratio: 1.030639e-01	ci left: 4.168579e-04	ci right 4.624484e-04	k: 1445	n:3290000
FUT8   3290000 perm   5239 sec   (628 perm/sec)   p_kst 4.392097e-04   p_cons 3.019960e-01   p_joint 4.392097e-04

Joint ci ratio: 1.028861e-01	ci left: 4.170708e-04	ci right 4.626012e-04	k: 1450	n:3300000
Cons ci ratio: 3.280563e-03	ci left: 3.015092e-01	ci right 3.025002e-01	k: 996615	n:3300000
KS ci ratio: 1.028861e-01	ci left: 4.170708e-04	ci right 4.626012e-04	k: 1450	n:3300000
FUT8   3300000 perm   5269 sec   (626 perm/sec)   p_kst 4.393939e-04   p_cons 3.020045e-01   p_joint 4.393939e-04

Joint ci ratio: 1.026388e-01	ci left: 4.178712e-04	ci right 4.633727e-04	k: 1457	n:3310000
Cons ci ratio: 3.275697e-03	ci left: 3.014979e-01	ci right 3.024874e-01	k: 999595	n:3310000
KS ci ratio: 1.026388e-01	ci left: 4.178712e-04	ci right 4.633727e-04	k: 1457	n:3310000
FUT8   3310000 perm   5299 sec   (625 perm/sec)   p_kst 4.401813e-04   p_cons 3.019924e-01   p_joint 4.401813e-04

Joint ci ratio: 1.026037e-01	ci left: 4.169060e-04	ci right 4.622859e-04	k: 1458	n:3320000
Cons ci ratio: 3.270688e-03	ci left: 3.015080e-01	ci right 3.024960e-01	k: 1002646	n:3320000
KS ci ratio: 1.026037e-01	ci left: 4.169060e-04	ci right 4.622859e-04	k: 1458	n:3320000
FUT8   3320000 perm   5328 sec   (623 perm/sec)   p_kst 4.391566e-04   p_cons 3.020018e-01   p_joint 4.391566e-04

Joint ci ratio: 1.024984e-01	ci left: 4.165318e-04	ci right 4.618217e-04	k: 1461	n:3330000
Cons ci ratio: 3.265873e-03	ci left: 3.014958e-01	ci right 3.024823e-01	k: 1005623	n:3330000
KS ci ratio: 1.024984e-01	ci left: 4.165318e-04	ci right 4.618217e-04	k: 1461	n:3330000
FUT8   3330000 perm   5359 sec   (621 perm/sec)   p_kst 4.387387e-04   p_cons 3.019889e-01   p_joint 4.387387e-04

Joint ci ratio: 1.022538e-01	ci left: 4.173269e-04	ci right 4.625884e-04	k: 1468	n:3340000
Cons ci ratio: 3.260906e-03	ci left: 3.015061e-01	ci right 3.024912e-01	k: 1008675	n:3340000
KS ci ratio: 1.022538e-01	ci left: 4.173269e-04	ci right 4.625884e-04	k: 1468	n:3340000
FUT8   3340000 perm   5389 sec   (620 perm/sec)   p_kst 4.395210e-04   p_cons 3.019985e-01   p_joint 4.395210e-04

Joint ci ratio: 1.022191e-01	ci left: 4.163720e-04	ci right 4.615137e-04	k: 1469	n:3350000
Cons ci ratio: 3.255913e-03	ci left: 3.015227e-01	ci right 3.025063e-01	k: 1011748	n:3350000
KS ci ratio: 1.022191e-01	ci left: 4.163720e-04	ci right 4.615137e-04	k: 1469	n:3350000
FUT8   3350000 perm   5419 sec   (618 perm/sec)   p_kst 4.385075e-04   p_cons 3.020143e-01   p_joint 4.385075e-04

Joint ci ratio: 1.020803e-01	ci left: 4.162929e-04	ci right 4.613611e-04	k: 1473	n:3360000
Cons ci ratio: 3.251214e-03	ci left: 3.015040e-01	ci right 3.024862e-01	k: 1014703	n:3360000
KS ci ratio: 1.020803e-01	ci left: 4.162929e-04	ci right 4.613611e-04	k: 1473	n:3360000
FUT8   3360000 perm   5450 sec   (617 perm/sec)   p_kst 4.383929e-04   p_cons 3.019949e-01   p_joint 4.383929e-04

Joint ci ratio: 1.019766e-01	ci left: 4.159251e-04	ci right 4.609050e-04	k: 1476	n:3370000
Cons ci ratio: 3.246373e-03	ci left: 3.015066e-01	ci right 3.024872e-01	k: 1017729	n:3370000
KS ci ratio: 1.019766e-01	ci left: 4.159251e-04	ci right 4.609050e-04	k: 1476	n:3370000
FUT8   3370000 perm   5481 sec   (615 perm/sec)   p_kst 4.379822e-04   p_cons 3.019967e-01   p_joint 4.379822e-04

Joint ci ratio: 1.019422e-01	ci left: 4.149828e-04	ci right 4.598447e-04	k: 1477	n:3380000
Cons ci ratio: 3.241442e-03	ci left: 3.015236e-01	ci right 3.025028e-01	k: 1020804	n:3380000
KS ci ratio: 1.019422e-01	ci left: 4.149828e-04	ci right 4.598447e-04	k: 1477	n:3380000
FUT8   3380000 perm   5511 sec   (613 perm/sec)   p_kst 4.369822e-04   p_cons 3.020130e-01   p_joint 4.369822e-04

Joint ci ratio: 1.018389e-01	ci left: 4.146211e-04	ci right 4.593958e-04	k: 1480	n:3390000
Cons ci ratio: 3.236644e-03	ci left: 3.015260e-01	ci right 3.025038e-01	k: 1023830	n:3390000
KS ci ratio: 1.018389e-01	ci left: 4.146211e-04	ci right 4.593958e-04	k: 1480	n:3390000
FUT8   3390000 perm   5542 sec   (612 perm/sec)   p_kst 4.365782e-04   p_cons 3.020147e-01   p_joint 4.365782e-04

Joint ci ratio: 1.015308e-01	ci left: 4.159814e-04	ci right 4.607589e-04	k: 1489	n:3400000
Cons ci ratio: 3.231971e-03	ci left: 3.015149e-01	ci right 3.024913e-01	k: 1026810	n:3400000
KS ci ratio: 1.015308e-01	ci left: 4.159814e-04	ci right 4.607589e-04	k: 1489	n:3400000
FUT8   3400000 perm   5573 sec   (610 perm/sec)   p_kst 4.379412e-04   p_cons 3.020029e-01   p_joint 4.379412e-04

Joint ci ratio: 1.013948e-01	ci left: 4.159047e-04	ci right 4.606105e-04	k: 1493	n:3410000
Cons ci ratio: 3.227137e-03	ci left: 3.015277e-01	ci right 3.025026e-01	k: 1029871	n:3410000
KS ci ratio: 1.013948e-01	ci left: 4.159047e-04	ci right 4.606105e-04	k: 1493	n:3410000
FUT8   3410000 perm   5603 sec   (609 perm/sec)   p_kst 4.378299e-04   p_cons 3.020150e-01   p_joint 4.378299e-04

Joint ci ratio: 1.011580e-01	ci left: 4.166836e-04	ci right 4.613623e-04	k: 1500	n:3420000
Cons ci ratio: 3.222237e-03	ci left: 3.015517e-01	ci right 3.025252e-01	k: 1032971	n:3420000
KS ci ratio: 1.011580e-01	ci left: 4.166836e-04	ci right 4.613623e-04	k: 1500	n:3420000
FUT8   3420000 perm   5634 sec   (607 perm/sec)   p_kst 4.385965e-04   p_cons 3.020383e-01   p_joint 4.385965e-04

Joint ci ratio: 1.009564e-01	ci left: 4.171738e-04	ci right 4.618107e-04	k: 1506	n:3430000
Cons ci ratio: 3.217513e-03	ci left: 3.015555e-01	ci right 3.025276e-01	k: 1036002	n:3430000
KS ci ratio: 1.009564e-01	ci left: 4.171738e-04	ci right 4.618107e-04	k: 1506	n:3430000
FUT8   3430000 perm   5666 sec   (605 perm/sec)   p_kst 4.390671e-04   p_cons 3.020414e-01   p_joint 4.390671e-04

Joint ci ratio: 1.008561e-01	ci left: 4.168112e-04	ci right 4.613623e-04	k: 1509	n:3440000
Cons ci ratio: 3.212778e-03	ci left: 3.015634e-01	ci right 3.025341e-01	k: 1039047	n:3440000
KS ci ratio: 1.008561e-01	ci left: 4.168112e-04	ci right 4.613623e-04	k: 1509	n:3440000
FUT8   3440000 perm   5698 sec   (604 perm/sec)   p_kst 4.386628e-04   p_cons 3.020485e-01   p_joint 4.386628e-04

Joint ci ratio: 1.008228e-01	ci left: 4.158856e-04	ci right 4.603222e-04	k: 1510	n:3450000
Cons ci ratio: 3.208343e-03	ci left: 3.015347e-01	ci right 3.025039e-01	k: 1041966	n:3450000
KS ci ratio: 1.008228e-01	ci left: 4.158856e-04	ci right 4.603222e-04	k: 1510	n:3450000
FUT8   3450000 perm   5729 sec   (602 perm/sec)   p_kst 4.376812e-04   p_cons 3.020191e-01   p_joint 4.376812e-04

Joint ci ratio: 1.006896e-01	ci left: 4.158105e-04	ci right 4.601770e-04	k: 1514	n:3460000
Cons ci ratio: 3.203824e-03	ci left: 3.015194e-01	ci right 3.024873e-01	k: 1044931	n:3460000
KS ci ratio: 1.006896e-01	ci left: 4.158105e-04	ci right 4.601770e-04	k: 1514	n:3460000
FUT8   3460000 perm   5760 sec   (601 perm/sec)   p_kst 4.375723e-04   p_cons 3.020032e-01   p_joint 4.375723e-04

Joint ci ratio: 1.005901e-01	ci left: 4.154550e-04	ci right 4.597371e-04	k: 1517	n:3470000
Cons ci ratio: 3.199200e-03	ci left: 3.015207e-01	ci right 3.024871e-01	k: 1047953	n:3470000
KS ci ratio: 1.005901e-01	ci left: 4.154550e-04	ci right 4.597371e-04	k: 1517	n:3470000
FUT8   3470000 perm   5792 sec   (599 perm/sec)   p_kst 4.371758e-04   p_cons 3.020037e-01   p_joint 4.371758e-04

Joint ci ratio: 1.003918e-01	ci left: 4.159420e-04	ci right 4.601835e-04	k: 1523	n:3480000
Cons ci ratio: 3.194716e-03	ci left: 3.015062e-01	ci right 3.024712e-01	k: 1050920	n:3480000
KS ci ratio: 1.003918e-01	ci left: 4.159420e-04	ci right 4.601835e-04	k: 1523	n:3480000
FUT8   3480000 perm   5824 sec   (597 perm/sec)   p_kst 4.376437e-04   p_cons 3.019885e-01   p_joint 4.376437e-04

Joint ci ratio: 1.002932e-01	ci left: 4.155882e-04	ci right 4.597461e-04	k: 1526	n:3490000
Cons ci ratio: 3.190242e-03	ci left: 3.014928e-01	ci right 3.024565e-01	k: 1053891	n:3490000
KS ci ratio: 1.002932e-01	ci left: 4.155882e-04	ci right 4.597461e-04	k: 1526	n:3490000
FUT8   3490000 perm   5856 sec   (596 perm/sec)   p_kst 4.372493e-04   p_cons 3.019745e-01   p_joint 4.372493e-04

Joint ci ratio: 1.001948e-01	ci left: 4.152365e-04	ci right 4.593112e-04	k: 1529	n:3500000
Cons ci ratio: 3.185650e-03	ci left: 3.014976e-01	ci right 3.024599e-01	k: 1056925	n:3500000
KS ci ratio: 1.001948e-01	ci left: 4.152365e-04	ci right 4.593112e-04	k: 1529	n:3500000
FUT8   3500000 perm   5887 sec   (595 perm/sec)   p_kst 4.368571e-04   p_cons 3.019786e-01   p_joint 4.368571e-04

Joint ci ratio: 1.000315e-01	ci left: 4.154423e-04	ci right 4.594627e-04	k: 1534	n:3510000
Cons ci ratio: 3.181076e-03	ci left: 3.015026e-01	ci right 3.024635e-01	k: 1059960	n:3510000
KS ci ratio: 1.000315e-01	ci left: 4.154423e-04	ci right 4.594627e-04	k: 1534	n:3510000
FUT8   3510000 perm   5919 sec   (593 perm/sec)   p_kst 4.370370e-04   p_cons 3.019829e-01   p_joint 4.370370e-04

Joint ci ratio: 9.990144e-02	ci left: 4.153700e-04	ci right 4.593222e-04	k: 1538	n:3520000
Cons ci ratio: 3.176592e-03	ci left: 3.014982e-01	ci right 3.024578e-01	k: 1062962	n:3520000
KS ci ratio: 9.990144e-02	ci left: 4.153700e-04	ci right 4.593222e-04	k: 1538	n:3520000
FUT8   3520000 perm   5951 sec   (592 perm/sec)   p_kst 4.369318e-04   p_cons 3.019778e-01   p_joint 4.369318e-04

Outputting figure to mutsig2_images.part000000000067/FUT8.2_1863_3520000_0.00043693_0.30198_0.00043693.png
                gene_name: FUT8
               theta_stop: 0.100 
                    nperm: 3520000 
                     p_ks: 0.00044 
        ci_ks_bounds_left: 0.00042 
       ci_ks_bounds_right: 0.00046 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.00044 
     ci_joint_bounds_left: 0.00042 
    ci_joint_bounds_right: 0.00046 

Current progress: 96 percent done.
FXYD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.611998e-02	ci left: 6.833505e-01	ci right 7.015373e-01	k: 6925	n:10000
Cons ci ratio: 1.414779e-02	ci left: 8.783802e-01	ci right 8.909947e-01	k: 8848	n:10000
KS ci ratio: 3.624069e-02	ci left: 5.292700e-01	ci right 5.489072e-01	k: 5391	n:10000
FXYD1   10000 perm   1 sec   (7006 perm/sec)   p_kst 5.391000e-01   p_cons 8.848000e-01   p_joint 6.925000e-01

Outputting figure to mutsig2_images.part000000000067/FXYD1.2_303_10000_0.5391_0.8848_0.6925.png
                gene_name: FXYD1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 98 percent done.
FZD10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.652600e-02	ci left: 5.253654e-01	ci right 5.450141e-01	k: 5352	n:10000
Cons ci ratio: 3.450369e-02	ci left: 5.536120e-01	ci right 5.731511e-01	k: 5634	n:10000
KS ci ratio: 4.347894e-02	ci left: 4.385190e-01	ci right 4.581112e-01	k: 4483	n:10000
FZD10   10000 perm   2 sec   (6100 perm/sec)   p_kst 4.483000e-01   p_cons 5.634000e-01   p_joint 5.352000e-01

Outputting figure to mutsig2_images.part000000000067/FZD10.2_1750_10000_0.4483_0.5634_0.5352.png
                gene_name: FZD10
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000067
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 67 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1534>
Subject: Job 8004093: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1534>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000068> was used as the working directory.
Started at Sun Nov 11 15:06:03 2012
Results reported at Sun Nov 11 15:46:42 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000068.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000068.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 68  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000068.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   2766.77 sec.
    Max Memory :      4680 MB
    Max Swap   :      7087 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
68
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 68
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 68: processing genes 6062 - 6152
Calculating significance of each gene.
Using projection method.
6062	FZD3	1.772424e-01
6063	FZD4	7.074692e-01
6064	FZD5	1
6065	FZD6	7.817730e-01
6066	FZD7	1
6067	FZD8	7.967775e-01
6068	FZD9	6.678862e-01
6069	FZR1	1
6070	G0S2	1
6071	G2E3	3.078293e-01
6072	G3BP1	1
6073	G3BP2	3.446208e-01
6074	G6PC	2.240362e-01
6075	G6PC2	1.605495e-01
6076	G6PC3	1
6077	G6PD	7.961553e-01
6078	GAA	1
6079	GAB1	1
6080	GAB2	8.560135e-01
6081	GAB3	6.813177e-01
6082	GAB4	9.278165e-01
6083	GABARAP	3.682210e-01
6084	GABARAPL1	1
6085	GABARAPL2	1
6086	GABBR1	9.746734e-01
6087	GABBR2	9.558629e-01
6088	GABPA	3.159157e-01
6089	GABPB1	5.176061e-01
6090	GABPB2	4.991059e-01
6091	GABRA1	1.281342e-01
6092	GABRA2	7.548065e-05
6093	GABRA3	1.186274e-01
6094	GABRA4	1
6095	GABRA5	8.388112e-02
6096	GABRA6	3.795681e-04
6097	GABRB1	5.087244e-01
6098	GABRB2	2.568242e-02
6099	GABRB3	1.627318e-01
6100	GABRD	5.265089e-01
6101	GABRE	7.980855e-02
6102	GABRG1	3.733925e-01
6103	GABRG2	7.452000e-01
6104	GABRG3	2.512783e-03
6105	GABRP	4.536072e-01
6106	GABRQ	8.387608e-01
6107	GABRR1	1.292684e-01
6108	GABRR2	2.587571e-01
6109	GABRR3	1
6110	GAD1	2.809768e-01
6111	GAD2	1
6112	GADD45A	4.771043e-01
6113	GADD45B	3.493157e-01
6114	GADD45G	4.695042e-01
6115	GADD45GIP1	1
6116	GADL1	8.171842e-02
6117	GAGE1	1
6118	GAGE10	2.084326e-01
6119	GAGE13	1
6120	GAK	6.527555e-01
6121	GAL	3.589214e-01
6122	GAL3ST1	1
6123	GAL3ST2	5.202429e-01
6124	GAL3ST3	1.032980e-01
6125	GAL3ST4	8.755484e-01
6126	GALC	1
6127	GALE	1
6128	GALK1	1
6129	GALK2	7.084004e-01
6130	GALM	1
6131	GALNS	1
6132	GALNT1	1
6133	GALNT10	6.452241e-01
6134	GALNT11	7.704898e-01
6135	GALNT12	3.328813e-01
6136	GALNT13	8.570545e-02
6137	GALNT14	1.080750e-01
6138	GALNT2	4.617211e-01
6139	GALNT3	5.632870e-01
6140	GALNT4	1
6141	GALNT5	1.251625e-01
6142	GALNT6	7.272351e-01
6143	GALNT7	1
6144	GALNT8	4.233632e-01
6145	GALNT9	5.171824e-01
6146	GALNTL1	5.286381e-01
6147	GALNTL2	1
6148	GALNTL4	2.745586e-01
6149	GALNTL5	1.631557e-01
6150	GALNTL6	1.943844e-01
6151	GALP	8.007920e-02
6152	GALR1	1.659598e-01
Done

Running MutSig 2:
Scatter job 68: processing genes 6062 - 6152
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
GABRG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.984796e-02	ci left: 1.863882e-01	ci right 2.019904e-01	k: 1941	n:10000
Cons ci ratio: 1.238882e-01	ci left: 8.533549e-02	ci right 9.670407e-02	k: 909	n:10000
KS ci ratio: 2.615064e-02	ci left: 6.828465e-01	ci right 7.010415e-01	k: 6920	n:10000
GABRG1   10000 perm   2 sec   (4550 perm/sec)   p_kst 6.920000e-01   p_cons 9.090000e-02   p_joint 1.941000e-01

Joint ci ratio: 4.846843e-02	ci left: 2.404401e-01	ci right 2.524337e-01	k: 4928	n:20000
Cons ci ratio: 8.186402e-02	ci left: 9.862400e-02	ci right 1.070919e-01	k: 2056	n:20000
KS ci ratio: 1.843332e-02	ci left: 6.869068e-01	ci right 6.997370e-01	k: 13867	n:20000
GABRG1   20000 perm   8 sec   (2380 perm/sec)   p_kst 6.933500e-01   p_cons 1.028000e-01   p_joint 2.464000e-01

Outputting figure to mutsig2_images.part000000000068/GABRG1.15_1434_20000_0.69335_0.1028_0.2464.png
                gene_name: GABRG1
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.099 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 2 percent done.
GALNT13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.686115e-02	ci left: 2.471717e-01	ci right 2.643708e-01	k: 2557	n:10000
Cons ci ratio: 9.671176e-02	ci left: 1.342342e-01	ci right 1.479756e-01	k: 1410	n:10000
KS ci ratio: 6.873843e-02	ci left: 2.368921e-01	ci right 2.538565e-01	k: 2453	n:10000
GALNT13   10000 perm   2 sec   (4629 perm/sec)   p_kst 2.453000e-01   p_cons 1.410000e-01   p_joint 2.557000e-01

Outputting figure to mutsig2_images.part000000000068/GALNT13.13_1715_10000_0.2453_0.141_0.2557.png
                gene_name: GALNT13
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 3 percent done.
GABRA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.375241e-02	ci left: 4.354264e-01	ci right 4.550056e-01	k: 4452	n:10000
Cons ci ratio: 7.472467e-02	ci left: 2.076722e-01	ci right 2.238937e-01	k: 2157	n:10000
KS ci ratio: 3.531015e-02	ci left: 5.421894e-01	ci right 5.617803e-01	k: 5520	n:10000
GABRA2   10000 perm   2 sec   (4814 perm/sec)   p_kst 5.520000e-01   p_cons 2.157000e-01   p_joint 4.452000e-01

Outputting figure to mutsig2_images.part000000000068/GABRA2.12_1392_10000_0.552_0.2157_0.4452.png
                gene_name: GABRA2
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 5 percent done.
GABRB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.588261e-02	ci left: 1.362914e-01	ci right 1.501172e-01	k: 1431	n:10000
Cons ci ratio: 8.701508e-02	ci left: 1.613092e-01	ci right 1.760843e-01	k: 1686	n:10000
KS ci ratio: 1.180551e-01	ci left: 9.340841e-02	ci right 1.052262e-01	k: 992	n:10000
GABRB3   10000 perm   2 sec   (4511 perm/sec)   p_kst 9.920000e-02   p_cons 1.686000e-01   p_joint 1.431000e-01

Joint ci ratio: 7.461996e-02	ci left: 1.167073e-01	ci right 1.258032e-01	k: 2424	n:20000
Cons ci ratio: 6.352209e-02	ci left: 1.548452e-01	ci right 1.650539e-01	k: 3198	n:20000
KS ci ratio: 8.390194e-02	ci left: 9.425655e-02	ci right 1.025606e-01	k: 1967	n:20000
GABRB3   20000 perm   5 sec   (4070 perm/sec)   p_kst 9.835000e-02   p_cons 1.599000e-01   p_joint 1.212000e-01

Outputting figure to mutsig2_images.part000000000068/GABRB3.11_1542_20000_0.09835_0.1599_0.1212.png
                gene_name: GABRB3
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.098 
        ci_ks_bounds_left: 0.094 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 7 percent done.
GABRG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.699811e-01	ci left: 9.049096e-03	ci right 1.324298e-02	k: 110	n:10000
Cons ci ratio: 1.017651e-01	ci left: 1.225867e-01	ci right 1.358301e-01	k: 1291	n:10000
KS ci ratio: 3.134257e-01	ci left: 1.298624e-02	ci right 1.790194e-02	k: 153	n:10000
GABRG3   10000 perm   2 sec   (4875 perm/sec)   p_kst 1.530000e-02   p_cons 1.291000e-01   p_joint 1.100000e-02

Joint ci ratio: 1.683252e-01	ci left: 2.417421e-02	ci right 2.866491e-02	k: 527	n:20000
Cons ci ratio: 7.200805e-02	ci left: 1.243836e-01	ci right 1.337245e-01	k: 2580	n:20000
KS ci ratio: 2.257608e-01	ci left: 1.317232e-02	ci right 1.657086e-02	k: 296	n:20000
GABRG3   20000 perm   5 sec   (4376 perm/sec)   p_kst 1.480000e-02   p_cons 1.290000e-01   p_joint 2.635000e-02

Joint ci ratio: 1.147638e-01	ci left: 3.528116e-02	ci right 3.960901e-02	k: 1122	n:30000
Cons ci ratio: 5.948912e-02	ci left: 1.226594e-01	ci right 1.302131e-01	k: 3792	n:30000
KS ci ratio: 1.870157e-01	ci left: 1.308242e-02	ci right 1.581280e-02	k: 432	n:30000
GABRG3   30000 perm   7 sec   (4119 perm/sec)   p_kst 1.440000e-02   p_cons 1.264000e-01   p_joint 3.740000e-02

Joint ci ratio: 1.000267e-01	ci left: 3.512255e-02	ci right 3.884506e-02	k: 1478	n:40000
Cons ci ratio: 5.127195e-02	ci left: 1.242213e-01	ci right 1.307828e-01	k: 5099	n:40000
KS ci ratio: 1.615828e-01	ci left: 1.332738e-02	ci right 1.569388e-02	k: 579	n:40000
GABRG3   40000 perm   10 sec   (4013 perm/sec)   p_kst 1.447500e-02   p_cons 1.274750e-01   p_joint 3.695000e-02

Joint ci ratio: 1.079817e-01	ci left: 2.429164e-02	ci right 2.708379e-02	k: 1283	n:50000
Cons ci ratio: 4.455842e-02	ci left: 1.310452e-01	ci right 1.370373e-01	k: 6701	n:50000
KS ci ratio: 1.433255e-01	ci left: 1.368265e-02	ci right 1.581423e-02	k: 736	n:50000
GABRG3   50000 perm   13 sec   (3924 perm/sec)   p_kst 1.472000e-02   p_cons 1.340200e-01   p_joint 2.566000e-02

Joint ci ratio: 1.049651e-01	ci left: 2.152301e-02	ci right 2.392347e-02	k: 1362	n:60000
Cons ci ratio: 4.068022e-02	ci left: 1.312837e-01	ci right 1.367518e-01	k: 8040	n:60000
KS ci ratio: 1.299755e-01	ci left: 1.396191e-02	ci right 1.591875e-02	k: 895	n:60000
GABRG3   60000 perm   16 sec   (3846 perm/sec)   p_kst 1.491667e-02   p_cons 1.340000e-01   p_joint 2.270000e-02

Joint ci ratio: 9.408206e-02	ci left: 2.306027e-02	ci right 2.535083e-02	k: 1693	n:70000
Cons ci ratio: 3.782846e-02	ci left: 1.304784e-01	ci right 1.355235e-01	k: 9309	n:70000
KS ci ratio: 1.211206e-01	ci left: 1.384919e-02	ci right 1.564850e-02	k: 1031	n:70000
GABRG3   70000 perm   19 sec   (3766 perm/sec)   p_kst 1.472857e-02   p_cons 1.329857e-01   p_joint 2.418571e-02

Joint ci ratio: 8.393984e-02	ci left: 2.542244e-02	ci right 2.766208e-02	k: 2122	n:80000
Cons ci ratio: 3.536422e-02	ci left: 1.307781e-01	ci right 1.354986e-01	k: 10650	n:80000
KS ci ratio: 1.138098e-01	ci left: 1.378023e-02	ci right 1.545525e-02	k: 1168	n:80000
GABRG3   80000 perm   22 sec   (3697 perm/sec)   p_kst 1.460000e-02   p_cons 1.331250e-01   p_joint 2.652500e-02

Joint ci ratio: 1.004005e-01	ci left: 1.581867e-02	ci right 1.750158e-02	k: 1498	n:90000
Cons ci ratio: 3.335678e-02	ci left: 1.308098e-01	ci right 1.352583e-01	k: 11972	n:90000
KS ci ratio: 1.037223e-01	ci left: 1.481130e-02	ci right 1.644236e-02	k: 1405	n:90000
GABRG3   90000 perm   25 sec   (3631 perm/sec)   p_kst 1.561111e-02   p_cons 1.330222e-01   p_joint 1.664444e-02

Joint ci ratio: 1.009998e-01	ci left: 1.408994e-02	ci right 1.559839e-02	k: 1483	n:100000
Cons ci ratio: 3.158800e-02	ci left: 1.313380e-01	ci right 1.355632e-01	k: 13344	n:100000
KS ci ratio: 9.837475e-02	ci left: 1.486053e-02	ci right 1.640775e-02	k: 1562	n:100000
GABRG3   100000 perm   28 sec   (3572 perm/sec)   p_kst 1.562000e-02   p_cons 1.334400e-01   p_joint 1.483000e-02

Joint ci ratio: 9.994840e-02	ci left: 1.310116e-02	ci right 1.448829e-02	k: 1516	n:110000
Cons ci ratio: 3.010438e-02	ci left: 1.315404e-01	ci right 1.355699e-01	k: 14690	n:110000
KS ci ratio: 9.352902e-02	ci left: 1.498250e-02	ci right 1.646137e-02	k: 1728	n:110000
GABRG3   110000 perm   31 sec   (3517 perm/sec)   p_kst 1.570909e-02   p_cons 1.335455e-01   p_joint 1.378182e-02

Outputting figure to mutsig2_images.part000000000068/GABRG3.10_1444_110000_0.015709_0.13355_0.013782.png
                gene_name: GABRG3
               theta_stop: 0.100 
                    nperm: 110000 
                     p_ks: 0.016 
        ci_ks_bounds_left: 0.015 
       ci_ks_bounds_right: 0.016 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.014 
     ci_joint_bounds_left: 0.013 
    ci_joint_bounds_right: 0.014 

Current progress: 9 percent done.
GABRA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.868672e-02	ci left: 6.417660e-01	ci right 6.605459e-01	k: 6512	n:10000
Cons ci ratio: 2.749650e-02	ci left: 6.608869e-01	ci right 6.794139e-01	k: 6702	n:10000
KS ci ratio: 4.424278e-02	ci left: 4.299405e-01	ci right 4.494947e-01	k: 4397	n:10000
GABRA6   10000 perm   2 sec   (4907 perm/sec)   p_kst 4.397000e-01   p_cons 6.702000e-01   p_joint 6.512000e-01

Outputting figure to mutsig2_images.part000000000068/GABRA6.8_1398_10000_0.4397_0.6702_0.6512.png
                gene_name: GABRA6
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 10 percent done.
GABRA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.210775e-03	ci left: 9.723839e-01	ci right 9.785348e-01	k: 9756	n:10000
Cons ci ratio: 2.988391e-02	ci left: 6.228625e-01	ci right 6.418603e-01	k: 6324	n:10000
KS ci ratio: 6.184739e-03	ci left: 9.725959e-01	ci right 9.787227e-01	k: 9758	n:10000
GABRA1   10000 perm   2 sec   (5292 perm/sec)   p_kst 9.758000e-01   p_cons 6.324000e-01   p_joint 9.756000e-01

Outputting figure to mutsig2_images.part000000000068/GABRA1.7_1407_10000_0.9758_0.6324_0.9756.png
                gene_name: GABRA1
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 12 percent done.
GALNT5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.110410e-02	ci left: 6.039745e-01	ci right 6.231593e-01	k: 6136	n:10000
KS ci ratio: 1.375648e-02	ci left: 8.841132e-01	ci right 8.964584e-01	k: 8904	n:10000
GALNT5   10000 perm   2 sec   (4663 perm/sec)   p_kst 8.904000e-01   p_cons 6.136000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000068/GALNT5.7_2863_10000_0.8904_0.6136_1.png
                gene_name: GALNT5
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 14 percent done.
GABRA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.644672e-02	ci left: 4.062155e-01	ci right 4.256335e-01	k: 4159	n:10000
KS ci ratio: 1.820536e-02	ci left: 8.149692e-01	ci right 8.300424e-01	k: 8226	n:10000
GABRA5   10000 perm   2 sec   (5231 perm/sec)   p_kst 8.226000e-01   p_cons 4.159000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000068/GABRA5.6_1425_10000_0.8226_0.4159_1.png
                gene_name: GABRA5
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 16 percent done.
GABRB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.009630e-03	ci left: 9.655188e-01	ci right 9.724045e-01	k: 9691	n:10000
KS ci ratio: 2.566713e-02	ci left: 6.908102e-01	ci right 7.088733e-01	k: 6999	n:10000
GABRB2   10000 perm   2 sec   (5877 perm/sec)   p_kst 6.999000e-01   p_cons 9.691000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000068/GABRB2.6_1579_10000_0.6999_0.9691_1.png
                gene_name: GABRB2
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 17 percent done.
GAD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.443180e-02	ci left: 4.278462e-01	ci right 4.473902e-01	k: 4376	n:10000
Cons ci ratio: 1.476486e-02	ci left: 8.691762e-01	ci right 8.822040e-01	k: 8758	n:10000
KS ci ratio: 6.136535e-02	ci left: 2.808214e-01	ci right 2.987012e-01	k: 2897	n:10000
GAD2   10000 perm   2 sec   (5350 perm/sec)   p_kst 2.897000e-01   p_cons 8.758000e-01   p_joint 4.376000e-01

Outputting figure to mutsig2_images.part000000000068/GAD2.6_1822_10000_0.2897_0.8758_0.4376.png
                gene_name: GAD2
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 19 percent done.
GAK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.612182e-02	ci left: 3.186009e-01	ci right 3.370994e-01	k: 3278	n:10000
Cons ci ratio: 1.093867e-01	ci left: 1.075413e-01	ci right 1.200846e-01	k: 1137	n:10000
KS ci ratio: 2.950589e-02	ci left: 6.287933e-01	ci right 6.477261e-01	k: 6383	n:10000
GAK   10000 perm   2 sec   (4467 perm/sec)   p_kst 6.383000e-01   p_cons 1.137000e-01   p_joint 3.278000e-01

Joint ci ratio: 3.101241e-02	ci left: 4.371476e-01	ci right 4.509687e-01	k: 8881	n:20000
Cons ci ratio: 7.318470e-02	ci left: 1.208400e-01	ci right 1.300692e-01	k: 2508	n:20000
KS ci ratio: 1.933822e-02	ci left: 6.660467e-01	ci right 6.791031e-01	k: 13452	n:20000
GAK   20000 perm   5 sec   (4020 perm/sec)   p_kst 6.726000e-01   p_cons 1.254000e-01   p_joint 4.440500e-01

Outputting figure to mutsig2_images.part000000000068/GAK.6_4048_20000_0.6726_0.1254_0.44405.png
                gene_name: GAK
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.45 

Current progress: 21 percent done.
FZD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.780176e-02	ci left: 6.559541e-01	ci right 6.745495e-01	k: 6653	n:10000
Cons ci ratio: 3.523883e-02	ci left: 5.431911e-01	ci right 5.627780e-01	k: 5530	n:10000
KS ci ratio: 3.858751e-02	ci left: 4.979503e-01	ci right 5.176452e-01	k: 5078	n:10000
FZD3   10000 perm   2 sec   (5504 perm/sec)   p_kst 5.078000e-01   p_cons 5.530000e-01   p_joint 6.653000e-01

Outputting figure to mutsig2_images.part000000000068/FZD3.5_2025_10000_0.5078_0.553_0.6653.png
                gene_name: FZD3
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.67 

Current progress: 22 percent done.
GABRQ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.573329e-02	ci left: 5.362797e-01	ci right 5.558935e-01	k: 5461	n:10000
Cons ci ratio: 2.850386e-02	ci left: 6.446834e-01	ci right 6.634268e-01	k: 6541	n:10000
KS ci ratio: 5.170467e-02	ci left: 3.554552e-01	ci right 3.744236e-01	k: 3649	n:10000
GABRQ   10000 perm   2 sec   (4915 perm/sec)   p_kst 3.649000e-01   p_cons 6.541000e-01   p_joint 5.461000e-01

Outputting figure to mutsig2_images.part000000000068/GABRQ.5_1935_10000_0.3649_0.6541_0.5461.png
                gene_name: GABRQ
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 24 percent done.
GAD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.799894e-03	ci left: 9.477308e-01	ci right 9.562034e-01	k: 9521	n:10000
KS ci ratio: 1.492718e-02	ci left: 8.667238e-01	ci right 8.798579e-01	k: 8734	n:10000
GAD1   10000 perm   2 sec   (5640 perm/sec)   p_kst 8.734000e-01   p_cons 9.521000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000068/GAD1.5_1890_10000_0.8734_0.9521_1.png
                gene_name: GAD1
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 26 percent done.
GALNT14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.292493e-02	ci left: 8.960051e-01	ci right 9.077596e-01	k: 9020	n:10000
Cons ci ratio: 3.239124e-02	ci left: 5.844994e-01	ci right 6.038457e-01	k: 5942	n:10000
KS ci ratio: 2.944842e-02	ci left: 6.296981e-01	ci right 6.486207e-01	k: 6392	n:10000
GALNT14   10000 perm   2 sec   (5808 perm/sec)   p_kst 6.392000e-01   p_cons 5.942000e-01   p_joint 9.020000e-01

Outputting figure to mutsig2_images.part000000000068/GALNT14.5_1719_10000_0.6392_0.5942_0.902.png
                gene_name: GALNT14
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 28 percent done.
GALR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.429909e-02	ci left: 7.135091e-01	ci right 7.311612e-01	k: 7224	n:10000
Cons ci ratio: 5.569174e-02	ci left: 3.219758e-01	ci right 3.405226e-01	k: 3312	n:10000
KS ci ratio: 2.680890e-02	ci left: 6.720653e-01	ci right 6.904290e-01	k: 6813	n:10000
GALR1   10000 perm   2 sec   (5709 perm/sec)   p_kst 6.813000e-01   p_cons 3.312000e-01   p_joint 7.224000e-01

Outputting figure to mutsig2_images.part000000000068/GALR1.5_1062_10000_0.6813_0.3312_0.7224.png
                gene_name: GALR1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 29 percent done.
G2E3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.469696e-02	ci left: 8.701983e-01	ci right 8.831813e-01	k: 8768	n:10000
KS ci ratio: 1.060242e-02	ci left: 9.267855e-01	ci right 9.367612e-01	k: 9319	n:10000
G2E3   10000 perm   2 sec   (5554 perm/sec)   p_kst 9.319000e-01   p_cons 8.768000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000068/G2E3.4_2177_10000_0.9319_0.8768_1.png
                gene_name: G2E3
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 31 percent done.
GAB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.615064e-02	ci left: 6.828465e-01	ci right 7.010415e-01	k: 6920	n:10000
KS ci ratio: 2.675954e-02	ci left: 6.728712e-01	ci right 6.912227e-01	k: 6821	n:10000
GAB4   10000 perm   2 sec   (5761 perm/sec)   p_kst 6.821000e-01   p_cons 6.920000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000068/GAB4.4_1765_10000_0.6821_0.692_1.png
                gene_name: GAB4
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 33 percent done.
GABRA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.160472e-02	ci left: 5.963432e-01	ci right 6.155950e-01	k: 6060	n:10000
Cons ci ratio: 6.219546e-02	ci left: 2.753738e-01	ci right 2.931520e-01	k: 2842	n:10000
KS ci ratio: 4.155349e-02	ci left: 4.609766e-01	ci right 4.806404e-01	k: 4708	n:10000
GABRA3   10000 perm   2 sec   (5823 perm/sec)   p_kst 4.708000e-01   p_cons 2.842000e-01   p_joint 6.060000e-01

Outputting figure to mutsig2_images.part000000000068/GABRA3.4_1515_10000_0.4708_0.2842_0.606.png
                gene_name: GABRA3
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 34 percent done.
GABRA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.927630e-02	ci left: 6.324129e-01	ci right 6.513044e-01	k: 6419	n:10000
Cons ci ratio: 5.460375e-02	ci left: 3.307132e-01	ci right 3.493801e-01	k: 3400	n:10000
KS ci ratio: 6.556918e-02	ci left: 2.545889e-01	ci right 2.719492e-01	k: 2632	n:10000
GABRA4   10000 perm   2 sec   (5416 perm/sec)   p_kst 2.632000e-01   p_cons 3.400000e-01   p_joint 6.419000e-01

Outputting figure to mutsig2_images.part000000000068/GABRA4.4_1701_10000_0.2632_0.34_0.6419.png
                gene_name: GABRA4
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 36 percent done.
GABRB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.260105e-02	ci left: 9.005222e-01	ci right 9.120399e-01	k: 9064	n:10000
Cons ci ratio: 5.673863e-02	ci left: 3.138374e-01	ci right 3.322658e-01	k: 3230	n:10000
KS ci ratio: 9.953727e-03	ci left: 9.346478e-01	ci right 9.440942e-01	k: 9395	n:10000
GABRB1   10000 perm   2 sec   (5954 perm/sec)   p_kst 9.395000e-01   p_cons 3.230000e-01   p_joint 9.064000e-01

Outputting figure to mutsig2_images.part000000000068/GABRB1.4_1461_10000_0.9395_0.323_0.9064.png
                gene_name: GABRB1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 38 percent done.
GABRE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.616784e-02	ci left: 5.302713e-01	ci right 5.499054e-01	k: 5401	n:10000
Cons ci ratio: 6.265710e-02	ci left: 2.724030e-01	ci right 2.901245e-01	k: 2812	n:10000
KS ci ratio: 3.192992e-02	ci left: 5.914243e-01	ci right 6.107168e-01	k: 6011	n:10000
GABRE   10000 perm   2 sec   (5315 perm/sec)   p_kst 6.011000e-01   p_cons 2.812000e-01   p_joint 5.401000e-01

Outputting figure to mutsig2_images.part000000000068/GABRE.4_1557_10000_0.6011_0.2812_0.5401.png
                gene_name: GABRE
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 40 percent done.
GABRG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.197272e-02	ci left: 4.559843e-01	ci right 4.756356e-01	k: 4658	n:10000
Cons ci ratio: 1.182907e-02	ci left: 9.110088e-01	ci right 9.219471e-01	k: 9166	n:10000
KS ci ratio: 6.081832e-02	ci left: 2.844871e-01	ci right 3.024334e-01	k: 2934	n:10000
GABRG2   10000 perm   2 sec   (5528 perm/sec)   p_kst 2.934000e-01   p_cons 9.166000e-01   p_joint 4.658000e-01

Outputting figure to mutsig2_images.part000000000068/GABRG2.4_1592_10000_0.2934_0.9166_0.4658.png
                gene_name: GABRG2
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 41 percent done.
GABRR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.856994e-02	ci left: 1.914104e-01	ci right 2.071652e-01	k: 1992	n:10000
Cons ci ratio: 1.573961e-01	ci left: 5.378678e-02	ci right 6.307254e-02	k: 583	n:10000
KS ci ratio: 2.406905e-02	ci left: 7.173453e-01	ci right 7.349227e-01	k: 7262	n:10000
GABRR1   10000 perm   2 sec   (5578 perm/sec)   p_kst 7.262000e-01   p_cons 5.830000e-02   p_joint 1.992000e-01

Joint ci ratio: 5.036807e-02	ci left: 2.265607e-01	ci right 2.383172e-01	k: 4648	n:20000
Cons ci ratio: 1.116540e-01	ci left: 5.479998e-02	ci right 6.132925e-02	k: 1160	n:20000
KS ci ratio: 1.716311e-02	ci left: 7.165897e-01	ci right 7.290454e-01	k: 14457	n:20000
GABRR1   20000 perm   4 sec   (4945 perm/sec)   p_kst 7.228500e-01   p_cons 5.800000e-02   p_joint 2.324000e-01

Joint ci ratio: 4.110822e-02	ci left: 2.277955e-01	ci right 2.373897e-01	k: 6977	n:30000
Cons ci ratio: 9.120750e-02	ci left: 5.534861e-02	ci right 6.067072e-02	k: 1739	n:30000
KS ci ratio: 1.403878e-02	ci left: 7.170264e-01	ci right 7.271972e-01	k: 21664	n:30000
GABRR1   30000 perm   6 sec   (4710 perm/sec)   p_kst 7.221333e-01   p_cons 5.796667e-02   p_joint 2.325667e-01

Outputting figure to mutsig2_images.part000000000068/GABRR1.4_1480_30000_0.72213_0.057967_0.23257.png
                gene_name: GABRR1
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.058 
      ci_cons_bounds_left: 0.055 
     ci_cons_bounds_right: 0.061 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 43 percent done.
GABRR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.487901e-01	ci left: 6.005239e-02	ci right 6.980294e-02	k: 648	n:10000
Cons ci ratio: 5.808866e-02	ci left: 3.037185e-01	ci right 3.219906e-01	k: 3128	n:10000
KS ci ratio: 2.046152e-01	ci left: 3.176903e-02	ci right 3.910482e-02	k: 353	n:10000
GABRR2   10000 perm   2 sec   (5937 perm/sec)   p_kst 3.530000e-02   p_cons 3.128000e-01   p_joint 6.480000e-02

Joint ci ratio: 1.409142e-01	ci left: 3.461962e-02	ci right 3.991600e-02	k: 744	n:20000
Cons ci ratio: 4.172385e-02	ci left: 2.997660e-01	ci right 3.125904e-01	k: 6123	n:20000
KS ci ratio: 1.508729e-01	ci left: 3.018195e-02	ci right 3.515513e-02	k: 652	n:20000
GABRR2   20000 perm   4 sec   (5189 perm/sec)   p_kst 3.260000e-02   p_cons 3.061500e-01   p_joint 3.720000e-02

Joint ci ratio: 9.823677e-02	ci left: 4.791886e-02	ci right 5.290200e-02	k: 1511	n:30000
Cons ci ratio: 3.419075e-02	ci left: 2.994276e-01	ci right 3.098769e-01	k: 9139	n:30000
KS ci ratio: 1.235472e-01	ci left: 3.045747e-02	ci right 3.450040e-02	k: 973	n:30000
GABRR2   30000 perm   6 sec   (4937 perm/sec)   p_kst 3.243333e-02   p_cons 3.046333e-01   p_joint 5.036667e-02

Joint ci ratio: 8.523179e-02	ci left: 4.808035e-02	ci right 5.238524e-02	k: 2008	n:40000
Cons ci ratio: 2.810077e-02	ci left: 3.226520e-01	ci right 3.318731e-01	k: 13090	n:40000
KS ci ratio: 1.068538e-01	ci left: 3.080812e-02	ci right 3.431018e-02	k: 1301	n:40000
GABRR2   40000 perm   8 sec   (4781 perm/sec)   p_kst 3.252500e-02   p_cons 3.272500e-01   p_joint 5.020000e-02

Joint ci ratio: 7.646249e-02	ci left: 4.802729e-02	ci right 5.186518e-02	k: 2496	n:50000
Cons ci ratio: 2.513610e-02	ci left: 3.231075e-01	ci right 3.313526e-01	k: 16361	n:50000
KS ci ratio: 9.626308e-02	ci left: 3.055267e-02	ci right 3.366196e-02	k: 1604	n:50000
GABRR2   50000 perm   11 sec   (4614 perm/sec)   p_kst 3.208000e-02   p_cons 3.272200e-01   p_joint 4.992000e-02

Outputting figure to mutsig2_images.part000000000068/GABRR2.4_1509_50000_0.03208_0.32722_0.04992.png
                gene_name: GABRR2
               theta_stop: 0.096 
                    nperm: 50000 
                     p_ks: 0.032 
        ci_ks_bounds_left: 0.031 
       ci_ks_bounds_right: 0.034 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.050 
     ci_joint_bounds_left: 0.048 
    ci_joint_bounds_right: 0.052 

Current progress: 45 percent done.
GADL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.019367e-02	ci left: 2.887481e-01	ci right 3.067699e-01	k: 2977	n:10000
Cons ci ratio: 2.949312e-02	ci left: 6.289944e-01	ci right 6.479249e-01	k: 6385	n:10000
KS ci ratio: 9.018502e-02	ci left: 1.516867e-01	ci right 1.661126e-01	k: 1588	n:10000
GADL1   10000 perm   2 sec   (5486 perm/sec)   p_kst 1.588000e-01   p_cons 6.385000e-01   p_joint 2.977000e-01

Outputting figure to mutsig2_images.part000000000068/GADL1.4_1626_10000_0.1588_0.6385_0.2977.png
                gene_name: GADL1
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 47 percent done.
GALNTL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.928093e-02	ci left: 2.340268e-01	ci right 2.509234e-01	k: 2424	n:10000
Cons ci ratio: 5.922919e-02	ci left: 2.954883e-01	ci right 3.136257e-01	k: 3045	n:10000
KS ci ratio: 8.726408e-02	ci left: 1.605234e-01	ci right 1.752706e-01	k: 1678	n:10000
GALNTL1   10000 perm   2 sec   (5451 perm/sec)   p_kst 1.678000e-01   p_cons 3.045000e-01   p_joint 2.424000e-01

Outputting figure to mutsig2_images.part000000000068/GALNTL1.4_1737_10000_0.1678_0.3045_0.2424.png
                gene_name: GALNTL1
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 48 percent done.
GALNTL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.878148e-02	ci left: 6.402572e-01	ci right 6.590556e-01	k: 6497	n:10000
Cons ci ratio: 1.839213e-02	ci left: 8.119208e-01	ci right 8.270926e-01	k: 8196	n:10000
KS ci ratio: 3.571888e-02	ci left: 5.364800e-01	ci right 5.560930e-01	k: 5463	n:10000
GALNTL4   10000 perm   2 sec   (5411 perm/sec)   p_kst 5.463000e-01   p_cons 8.196000e-01   p_joint 6.497000e-01

Outputting figure to mutsig2_images.part000000000068/GALNTL4.4_1868_10000_0.5463_0.8196_0.6497.png
                gene_name: GALNTL4
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 50 percent done.
GALNTL6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.077899e-01	ci left: 1.104696e-01	ci right 1.231546e-01	k: 1167	n:10000
Cons ci ratio: 1.038998e-01	ci left: 1.180892e-01	ci right 1.311304e-01	k: 1245	n:10000
KS ci ratio: 1.364833e-01	ci left: 7.097701e-02	ci right 8.147145e-02	k: 761	n:10000
GALNTL6   10000 perm   2 sec   (5397 perm/sec)   p_kst 7.610000e-02   p_cons 1.245000e-01   p_joint 1.167000e-01

Joint ci ratio: 1.050830e-01	ci left: 6.162181e-02	ci right 6.850530e-02	k: 1300	n:20000
Cons ci ratio: 7.252515e-02	ci left: 1.228085e-01	ci right 1.321001e-01	k: 2548	n:20000
KS ci ratio: 9.402830e-02	ci left: 7.617855e-02	ci right 8.374410e-02	k: 1598	n:20000
GALNTL6   20000 perm   4 sec   (4790 perm/sec)   p_kst 7.990000e-02   p_cons 1.274000e-01   p_joint 6.500000e-02

Joint ci ratio: 9.043755e-02	ci left: 5.626197e-02	ci right 6.162384e-02	k: 1767	n:30000
Cons ci ratio: 5.884267e-02	ci left: 1.250618e-01	ci right 1.326769e-01	k: 3865	n:30000
KS ci ratio: 7.638557e-02	ci left: 7.760915e-02	ci right 8.380567e-02	k: 2420	n:30000
GALNTL6   30000 perm   7 sec   (4563 perm/sec)   p_kst 8.066667e-02   p_cons 1.288333e-01   p_joint 5.890000e-02

Outputting figure to mutsig2_images.part000000000068/GALNTL6.4_1854_30000_0.080667_0.12883_0.0589.png
                gene_name: GALNTL6
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.081 
        ci_ks_bounds_left: 0.078 
       ci_ks_bounds_right: 0.084 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.059 
     ci_joint_bounds_left: 0.056 
    ci_joint_bounds_right: 0.062 

Current progress: 52 percent done.
FZD6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.123069e-02	ci left: 7.648635e-01	ci right 7.813771e-01	k: 7732	n:10000
Cons ci ratio: 4.303352e-02	ci left: 4.436076e-01	ci right 4.632196e-01	k: 4534	n:10000
KS ci ratio: 3.378007e-02	ci left: 5.640372e-01	ci right 5.835198e-01	k: 5738	n:10000
FZD6   10000 perm   2 sec   (5723 perm/sec)   p_kst 5.738000e-01   p_cons 4.534000e-01   p_joint 7.732000e-01

Outputting figure to mutsig2_images.part000000000068/FZD6.3_2145_10000_0.5738_0.4534_0.7732.png
                gene_name: FZD6
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 53 percent done.
G3BP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.420315e-02	ci left: 5.579219e-01	ci right 5.774387e-01	k: 5677	n:10000
KS ci ratio: 1.862795e-02	ci left: 8.080607e-01	ci right 8.233550e-01	k: 8158	n:10000
G3BP2   10000 perm   2 sec   (6090 perm/sec)   p_kst 8.158000e-01   p_cons 5.677000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000068/G3BP2.3_1493_10000_0.8158_0.5677_1.png
                gene_name: G3BP2
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 55 percent done.
G6PC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.765078e-01	ci left: 4.283864e-02	ci right 5.122777e-02	k: 469	n:10000
Cons ci ratio: 5.270911e-01	ci left: 4.059173e-03	ci right 7.040026e-03	k: 54	n:10000
KS ci ratio: 1.785521e-02	ci left: 8.206616e-01	ci right 8.355467e-01	k: 8282	n:10000
G6PC   10000 perm   2 sec   (6302 perm/sec)   p_kst 8.282000e-01   p_cons 5.400000e-03   p_joint 4.690000e-02

Joint ci ratio: 1.279880e-01	ci left: 4.192594e-02	ci right 4.770733e-02	k: 895	n:20000
Cons ci ratio: 3.761731e-01	ci left: 4.386465e-03	ci right 6.461320e-03	k: 107	n:20000
KS ci ratio: 1.244499e-02	ci left: 8.269985e-01	ci right 8.374048e-01	k: 16645	n:20000
G6PC   20000 perm   4 sec   (5488 perm/sec)   p_kst 8.322500e-01   p_cons 5.350000e-03   p_joint 4.475000e-02

Joint ci ratio: 1.086744e-01	ci left: 3.930342e-02	ci right 4.385257e-02	k: 1246	n:30000
Cons ci ratio: 3.043262e-01	ci left: 4.663813e-03	ci right 6.367437e-03	k: 164	n:30000
KS ci ratio: 1.009740e-02	ci left: 8.297406e-01	ci right 8.381946e-01	k: 25020	n:30000
G6PC   30000 perm   6 sec   (5200 perm/sec)   p_kst 8.340000e-01   p_cons 5.466667e-03   p_joint 4.153333e-02

Joint ci ratio: 9.458102e-02	ci left: 3.922427e-02	ci right 4.314270e-02	k: 1646	n:40000
Cons ci ratio: 2.672446e-01	ci left: 4.635393e-03	ci right 6.087840e-03	k: 213	n:40000
KS ci ratio: 8.760324e-03	ci left: 8.298126e-01	ci right 8.371389e-01	k: 33340	n:40000
G6PC   40000 perm   8 sec   (4995 perm/sec)   p_kst 8.335000e-01   p_cons 5.325000e-03   p_joint 4.115000e-02

Joint ci ratio: 1.034023e-01	ci left: 2.649344e-02	ci right 2.940171e-02	k: 1396	n:50000
Cons ci ratio: 2.472995e-01	ci left: 4.381872e-03	ci right 5.636657e-03	k: 249	n:50000
KS ci ratio: 7.860264e-03	ci left: 8.293185e-01	ci right 8.358828e-01	k: 41631	n:50000
G6PC   50000 perm   10 sec   (4843 perm/sec)   p_kst 8.326200e-01   p_cons 4.980000e-03   p_joint 2.792000e-02

Joint ci ratio: 8.160492e-02	ci left: 3.552005e-02	ci right 3.855827e-02	k: 2221	n:60000
Cons ci ratio: 2.231513e-01	ci left: 4.545749e-03	ci right 5.702915e-03	k: 306	n:60000
KS ci ratio: 7.181905e-03	ci left: 8.293534e-01	ci right 8.353478e-01	k: 49942	n:60000
G6PC   60000 perm   13 sec   (4712 perm/sec)   p_kst 8.323667e-01   p_cons 5.100000e-03   p_joint 3.701667e-02

Joint ci ratio: 6.636775e-02	ci left: 4.589374e-02	ci right 4.905819e-02	k: 3322	n:70000
Cons ci ratio: 2.032504e-01	ci left: 4.748444e-03	ci right 5.836041e-03	k: 369	n:70000
KS ci ratio: 6.635406e-03	ci left: 8.301586e-01	ci right 8.356995e-01	k: 58306	n:70000
G6PC   70000 perm   15 sec   (4594 perm/sec)   p_kst 8.329429e-01   p_cons 5.271429e-03   p_joint 4.745714e-02

Joint ci ratio: 6.523385e-02	ci left: 4.177691e-02	ci right 4.460634e-02	k: 3454	n:80000
Cons ci ratio: 1.914611e-01	ci left: 4.713369e-03	ci right 5.723024e-03	k: 416	n:80000
KS ci ratio: 6.199993e-03	ci left: 8.306487e-01	ci right 8.358271e-01	k: 66660	n:80000
G6PC   80000 perm   18 sec   (4489 perm/sec)   p_kst 8.332500e-01   p_cons 5.200000e-03   p_joint 4.317500e-02

Joint ci ratio: 6.135374e-02	ci left: 4.205610e-02	ci right 4.472898e-02	k: 3904	n:90000
Cons ci ratio: 1.807293e-01	ci left: 4.729949e-03	ci right 5.680150e-03	k: 467	n:90000
KS ci ratio: 5.843416e-03	ci left: 8.308934e-01	ci right 8.357739e-01	k: 75001	n:90000
G6PC   90000 perm   20 sec   (4395 perm/sec)   p_kst 8.333444e-01   p_cons 5.188889e-03   p_joint 4.337778e-02

Joint ci ratio: 6.320518e-02	ci left: 3.586805e-02	ci right 3.821890e-02	k: 3703	n:100000
Cons ci ratio: 1.699825e-01	ci left: 4.840224e-03	ci right 5.748834e-03	k: 528	n:100000
KS ci ratio: 5.546428e-03	ci left: 8.308748e-01	ci right 8.355059e-01	k: 83320	n:100000
G6PC   100000 perm   23 sec   (4303 perm/sec)   p_kst 8.332000e-01   p_cons 5.280000e-03   p_joint 3.703000e-02

Joint ci ratio: 5.549525e-02	ci left: 4.218547e-02	ci right 4.460232e-02	k: 4772	n:110000
Cons ci ratio: 1.619183e-01	ci left: 4.870738e-03	ci right 5.737477e-03	k: 582	n:110000
KS ci ratio: 5.301446e-03	ci left: 8.302891e-01	ci right 8.347115e-01	k: 91576	n:110000
G6PC   110000 perm   26 sec   (4207 perm/sec)   p_kst 8.325091e-01   p_cons 5.290909e-03   p_joint 4.338182e-02

Joint ci ratio: 5.297286e-02	ci left: 4.248442e-02	ci right 4.480437e-02	k: 5236	n:120000
Cons ci ratio: 1.557654e-01	ci left: 4.840939e-03	ci right 5.666582e-03	k: 629	n:120000
KS ci ratio: 5.072573e-03	ci left: 8.305593e-01	ci right 8.347913e-01	k: 99922	n:120000
G6PC   120000 perm   29 sec   (4132 perm/sec)   p_kst 8.326833e-01   p_cons 5.241667e-03   p_joint 4.363333e-02

Joint ci ratio: 5.087321e-02	ci left: 4.256469e-02	ci right 4.479418e-02	k: 5677	n:130000
Cons ci ratio: 1.497097e-01	ci left: 4.853277e-03	ci right 5.645962e-03	k: 681	n:130000
KS ci ratio: 4.875563e-03	ci left: 8.305284e-01	ci right 8.345952e-01	k: 108234	n:130000
G6PC   130000 perm   32 sec   (4047 perm/sec)   p_kst 8.325692e-01   p_cons 5.238462e-03   p_joint 4.366923e-02

Joint ci ratio: 5.899574e-02	ci left: 2.966877e-02	ci right 3.147931e-02	k: 4279	n:140000
Cons ci ratio: 1.453079e-01	ci left: 4.795532e-03	ci right 5.553756e-03	k: 723	n:140000
KS ci ratio: 4.701661e-03	ci left: 8.303971e-01	ci right 8.343177e-01	k: 116531	n:140000
G6PC   140000 perm   35 sec   (3971 perm/sec)   p_kst 8.323643e-01   p_cons 5.164286e-03   p_joint 3.056429e-02

Joint ci ratio: 5.192803e-02	ci left: 3.564878e-02	ci right 3.755585e-02	k: 5489	n:150000
Cons ci ratio: 1.396332e-01	ci left: 4.861586e-03	ci right 5.597738e-03	k: 783	n:150000
KS ci ratio: 4.542955e-03	ci left: 8.304197e-01	ci right 8.342074e-01	k: 124848	n:150000
G6PC   150000 perm   38 sec   (3896 perm/sec)   p_kst 8.323200e-01   p_cons 5.220000e-03   p_joint 3.659333e-02

Joint ci ratio: 5.528717e-02	ci left: 2.961965e-02	ci right 3.130993e-02	k: 4873	n:160000
Cons ci ratio: 1.348969e-01	ci left: 4.895725e-03	ci right 5.609883e-03	k: 839	n:160000
KS ci ratio: 4.398026e-03	ci left: 8.305230e-01	ci right 8.341899e-01	k: 133178	n:160000
G6PC   160000 perm   42 sec   (3829 perm/sec)   p_kst 8.323625e-01   p_cons 5.243750e-03   p_joint 3.045625e-02

Joint ci ratio: 5.349079e-02	ci left: 2.980377e-02	ci right 3.144758e-02	k: 5205	n:170000
Cons ci ratio: 1.295981e-01	ci left: 5.005905e-03	ci right 5.705245e-03	k: 909	n:170000
KS ci ratio: 4.264608e-03	ci left: 8.307163e-01	ci right 8.342724e-01	k: 141525	n:170000
G6PC   170000 perm   45 sec   (3765 perm/sec)   p_kst 8.325000e-01   p_cons 5.347059e-03   p_joint 3.061765e-02

Joint ci ratio: 5.183468e-02	ci left: 2.999565e-02	ci right 3.159729e-02	k: 5542	n:180000
Cons ci ratio: 1.259158e-01	ci left: 5.018214e-03	ci right 5.697867e-03	k: 963	n:180000
KS ci ratio: 4.140407e-03	ci left: 8.310401e-01	ci right 8.344936e-01	k: 149899	n:180000
G6PC   180000 perm   49 sec   (3702 perm/sec)   p_kst 8.327722e-01   p_cons 5.350000e-03   p_joint 3.078889e-02

Joint ci ratio: 5.046083e-02	ci left: 3.000686e-02	ci right 3.156540e-02	k: 5848	n:190000
Cons ci ratio: 1.225306e-01	ci left: 5.029478e-03	ci right 5.691015e-03	k: 1017	n:190000
KS ci ratio: 4.031401e-03	ci left: 8.309876e-01	ci right 8.343496e-01	k: 158208	n:190000
G6PC   190000 perm   52 sec   (3623 perm/sec)   p_kst 8.326737e-01   p_cons 5.352632e-03   p_joint 3.077895e-02

Joint ci ratio: 4.917425e-02	ci left: 3.003722e-02	ci right 3.155642e-02	k: 6158	n:200000
Cons ci ratio: 1.201961e-01	ci left: 4.971923e-03	ci right 5.612544e-03	k: 1057	n:200000
KS ci ratio: 3.927965e-03	ci left: 8.311272e-01	ci right 8.344032e-01	k: 166554	n:200000
G6PC   200000 perm   56 sec   (3554 perm/sec)   p_kst 8.327700e-01   p_cons 5.285000e-03   p_joint 3.079000e-02

Joint ci ratio: 3.822310e-02	ci left: 4.678287e-02	ci right 4.861059e-02	k: 10015	n:210000
Cons ci ratio: 1.172941e-01	ci left: 4.980051e-03	ci right 5.605152e-03	k: 1110	n:210000
KS ci ratio: 3.837408e-03	ci left: 8.308672e-01	ci right 8.340664e-01	k: 174819	n:210000
G6PC   210000 perm   60 sec   (3496 perm/sec)   p_kst 8.324714e-01   p_cons 5.285714e-03   p_joint 4.769048e-02

Joint ci ratio: 3.740039e-02	ci left: 4.666893e-02	ci right 4.845211e-02	k: 10462	n:220000
Cons ci ratio: 1.141498e-01	ci left: 5.027353e-03	ci right 5.640336e-03	k: 1172	n:220000
KS ci ratio: 3.756430e-03	ci left: 8.303627e-01	ci right 8.334922e-01	k: 183025	n:220000
G6PC   220000 perm   64 sec   (3437 perm/sec)   p_kst 8.319318e-01   p_cons 5.327273e-03   p_joint 4.755455e-02

Joint ci ratio: 3.684896e-02	ci left: 4.603087e-02	ci right 4.776318e-02	k: 10785	n:230000
Cons ci ratio: 1.117470e-01	ci left: 5.024247e-03	ci right 5.623106e-03	k: 1223	n:230000
KS ci ratio: 3.679475e-03	ci left: 8.299683e-01	ci right 8.330321e-01	k: 191246	n:230000
G6PC   230000 perm   68 sec   (3384 perm/sec)   p_kst 8.315043e-01   p_cons 5.317391e-03   p_joint 4.689130e-02

Joint ci ratio: 3.604784e-02	ci left: 4.611123e-02	ci right 4.780806e-02	k: 11269	n:240000
Cons ci ratio: 1.090606e-01	ci left: 5.062057e-03	ci right 5.649986e-03	k: 1284	n:240000
KS ci ratio: 3.604469e-03	ci left: 8.298082e-01	ci right 8.328088e-01	k: 199515	n:240000
G6PC   240000 perm   72 sec   (3337 perm/sec)   p_kst 8.313125e-01   p_cons 5.350000e-03   p_joint 4.695417e-02

Joint ci ratio: 3.537740e-02	ci left: 4.598326e-02	ci right 4.764327e-02	k: 11702	n:250000
Cons ci ratio: 1.068789e-01	ci left: 5.065850e-03	ci right 5.641709e-03	k: 1337	n:250000
KS ci ratio: 3.533664e-03	ci left: 8.296777e-01	ci right 8.326186e-01	k: 207788	n:250000
G6PC   250000 perm   76 sec   (3281 perm/sec)   p_kst 8.311520e-01   p_cons 5.348000e-03   p_joint 4.680800e-02

Joint ci ratio: 3.471902e-02	ci left: 4.592644e-02	ci right 4.755292e-02	k: 12151	n:260000
Cons ci ratio: 1.044838e-01	ci left: 5.103173e-03	ci right 5.669477e-03	k: 1399	n:260000
KS ci ratio: 3.468343e-03	ci left: 8.294381e-01	ci right 8.323237e-01	k: 216030	n:260000
G6PC   260000 perm   80 sec   (3233 perm/sec)   p_kst 8.308846e-01   p_cons 5.380769e-03   p_joint 4.673462e-02

Joint ci ratio: 3.407906e-02	ci left: 4.591817e-02	ci right 4.751380e-02	k: 12612	n:270000
Cons ci ratio: 1.025252e-01	ci left: 5.108990e-03	ci right 5.664671e-03	k: 1453	n:270000
KS ci ratio: 3.403815e-03	ci left: 8.294398e-01	ci right 8.322716e-01	k: 224332	n:270000
G6PC   270000 perm   85 sec   (3187 perm/sec)   p_kst 8.308593e-01   p_cons 5.381481e-03   p_joint 4.671111e-02

Joint ci ratio: 3.348128e-02	ci left: 4.588950e-02	ci right 4.745562e-02	k: 13067	n:280000
Cons ci ratio: 1.005388e-01	ci left: 5.128412e-03	ci right 5.674760e-03	k: 1511	n:280000
KS ci ratio: 3.340593e-03	ci left: 8.296246e-01	ci right 8.324042e-01	k: 232685	n:280000
G6PC   280000 perm   89 sec   (3142 perm/sec)   p_kst 8.310179e-01   p_cons 5.396429e-03   p_joint 4.666786e-02

Joint ci ratio: 3.288458e-02	ci left: 4.594172e-02	ci right 4.748115e-02	k: 13545	n:290000
Cons ci ratio: 9.879016e-02	ci left: 5.133136e-03	ci right 5.669925e-03	k: 1565	n:290000
KS ci ratio: 3.281088e-03	ci left: 8.297694e-01	ci right 8.324998e-01	k: 241030	n:290000
G6PC   290000 perm   94 sec   (3101 perm/sec)   p_kst 8.311379e-01   p_cons 5.396552e-03   p_joint 4.670690e-02

Outputting figure to mutsig2_images.part000000000068/G6PC.3_1094_290000_0.83114_0.0053966_0.046707.png
                gene_name: G6PC
               theta_stop: 0.099 
                    nperm: 290000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.0054 
      ci_cons_bounds_left: 0.0051 
     ci_cons_bounds_right: 0.0057 
                  p_joint: 0.047 
     ci_joint_bounds_left: 0.046 
    ci_joint_bounds_right: 0.047 

Current progress: 57 percent done.
G6PC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.964659e-02	ci left: 6.265817e-01	ci right 6.455390e-01	k: 6361	n:10000
Cons ci ratio: 1.765417e-02	ci left: 8.239157e-01	ci right 8.386908e-01	k: 8314	n:10000
KS ci ratio: 4.383219e-02	ci left: 4.345286e-01	ci right 4.541039e-01	k: 4443	n:10000
G6PC2   10000 perm   2 sec   (6069 perm/sec)   p_kst 4.443000e-01   p_cons 8.314000e-01   p_joint 6.361000e-01

Outputting figure to mutsig2_images.part000000000068/G6PC2.3_1088_10000_0.4443_0.8314_0.6361.png
                gene_name: G6PC2
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 59 percent done.
GABBR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.142864e-02	ci left: 4.624745e-01	ci right 4.821416e-01	k: 4723	n:10000
KS ci ratio: 2.676571e-02	ci left: 6.727704e-01	ci right 6.911235e-01	k: 6820	n:10000
GABBR1   10000 perm   2 sec   (4992 perm/sec)   p_kst 6.820000e-01   p_cons 4.723000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000068/GABBR1.3_3119_10000_0.682_0.4723_1.png
                gene_name: GABBR1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 60 percent done.
GABBR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.018079e-02	ci left: 7.823898e-01	ci right 7.984406e-01	k: 7905	n:10000
KS ci ratio: 2.223354e-02	ci left: 7.480651e-01	ci right 7.649852e-01	k: 7566	n:10000
GABBR2   10000 perm   2 sec   (5309 perm/sec)   p_kst 7.566000e-01   p_cons 7.905000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000068/GABBR2.3_2902_10000_0.7566_0.7905_1.png
                gene_name: GABBR2
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
GAL3ST3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.393891e-02	ci left: 8.814508e-01	ci right 8.939223e-01	k: 8878	n:10000
KS ci ratio: 2.739707e-02	ci left: 6.624978e-01	ci right 6.810020e-01	k: 6718	n:10000
GAL3ST3   10000 perm   2 sec   (6124 perm/sec)   p_kst 6.718000e-01   p_cons 8.878000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000068/GAL3ST3.3_1304_10000_0.6718_0.8878_1.png
                gene_name: GAL3ST3
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 64 percent done.
GALNS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.743772e-01	ci left: 4.389243e-02	ci right 5.237330e-02	k: 480	n:10000
Cons ci ratio: 3.823649e-01	ci left: 8.414755e-03	ci right 1.247803e-02	k: 103	n:10000
KS ci ratio: 5.658335e-02	ci left: 3.150282e-01	ci right 3.334743e-01	k: 3242	n:10000
GALNS   10000 perm   2 sec   (5987 perm/sec)   p_kst 3.242000e-01   p_cons 1.030000e-02   p_joint 4.800000e-02

Joint ci ratio: 1.118075e-01	ci left: 5.465393e-02	ci right 6.117534e-02	k: 1157	n:20000
Cons ci ratio: 2.665217e-01	ci left: 9.273887e-03	ci right 1.217100e-02	k: 213	n:20000
KS ci ratio: 3.989213e-02	ci left: 3.190567e-01	ci right 3.320941e-01	k: 6511	n:20000
GALNS   20000 perm   4 sec   (5232 perm/sec)   p_kst 3.255500e-01   p_cons 1.065000e-02   p_joint 5.785000e-02

Joint ci ratio: 7.539072e-02	ci left: 7.954163e-02	ci right 8.580614e-02	k: 2479	n:30000
Cons ci ratio: 2.145953e-01	ci left: 9.819042e-03	ci right 1.221040e-02	k: 329	n:30000
KS ci ratio: 3.233593e-02	ci left: 3.234510e-01	ci right 3.341155e-01	k: 9863	n:30000
GALNS   30000 perm   6 sec   (4949 perm/sec)   p_kst 3.287667e-01   p_cons 1.096667e-02   p_joint 8.263333e-02

Joint ci ratio: 5.837070e-02	ci left: 9.835966e-02	ci right 1.042984e-01	k: 4052	n:40000
Cons ci ratio: 1.823171e-01	ci left: 1.038273e-02	ci right 1.248909e-02	k: 456	n:40000
KS ci ratio: 2.815351e-02	ci left: 3.218301e-01	ci right 3.310452e-01	k: 13057	n:40000
GALNS   40000 perm   8 sec   (4752 perm/sec)   p_kst 3.264250e-01   p_cons 1.140000e-02   p_joint 1.013000e-01

Joint ci ratio: 5.410783e-02	ci left: 9.242371e-02	ci right 9.758342e-02	k: 4749	n:50000
Cons ci ratio: 1.611196e-01	ci left: 1.075669e-02	ci right 1.266064e-02	k: 584	n:50000
KS ci ratio: 2.513039e-02	ci left: 3.232072e-01	ci right 3.314529e-01	k: 16366	n:50000
GALNS   50000 perm   11 sec   (4601 perm/sec)   p_kst 3.273200e-01   p_cons 1.168000e-02   p_joint 9.498000e-02

Joint ci ratio: 5.576062e-02	ci left: 7.397409e-02	ci right 7.823369e-02	k: 4565	n:60000
Cons ci ratio: 1.488070e-01	ci left: 1.058197e-02	ci right 1.229911e-02	k: 685	n:60000
KS ci ratio: 2.290993e-02	ci left: 3.241604e-01	ci right 3.316896e-01	k: 19675	n:60000
GALNS   60000 perm   13 sec   (4494 perm/sec)   p_kst 3.279167e-01   p_cons 1.141667e-02   p_joint 7.608333e-02

Joint ci ratio: 4.494224e-02	ci left: 9.582120e-02	ci right 1.002408e-01	k: 6861	n:70000
Cons ci ratio: 1.380598e-01	ci left: 1.059913e-02	ci right 1.218462e-02	k: 796	n:70000
KS ci ratio: 2.127894e-02	ci left: 3.230263e-01	ci right 3.299881e-01	k: 22855	n:70000
GALNS   70000 perm   16 sec   (4393 perm/sec)   p_kst 3.265000e-01   p_cons 1.137143e-02   p_joint 9.801429e-02

Joint ci ratio: 4.200190e-02	ci left: 9.612146e-02	ci right 1.002577e-01	k: 7854	n:80000
Cons ci ratio: 1.296377e-01	ci left: 1.056697e-02	ci right 1.204379e-02	k: 903	n:80000
KS ci ratio: 1.989510e-02	ci left: 3.234626e-01	ci right 3.299750e-01	k: 26137	n:80000
GALNS   80000 perm   19 sec   (4304 perm/sec)   p_kst 3.267125e-01   p_cons 1.128750e-02   p_joint 9.817500e-02

Joint ci ratio: 2.970641e-02	ci left: 1.596976e-01	ci right 1.645242e-01	k: 14589	n:90000
Cons ci ratio: 1.218005e-01	ci left: 1.068433e-02	ci right 1.208076e-02	k: 1023	n:90000
KS ci ratio: 1.871531e-02	ci left: 3.246335e-01	ci right 3.307776e-01	k: 29493	n:90000
GALNS   90000 perm   21 sec   (4211 perm/sec)   p_kst 3.277000e-01   p_cons 1.136667e-02   p_joint 1.621000e-01

Joint ci ratio: 2.982388e-02	ci left: 1.451087e-01	ci right 1.495118e-01	k: 14730	n:100000
Cons ci ratio: 1.158998e-01	ci left: 1.065409e-02	ci right 1.197449e-02	k: 1130	n:100000
KS ci ratio: 1.772839e-02	ci left: 3.254494e-01	ci right 3.312806e-01	k: 32836	n:100000
GALNS   100000 perm   24 sec   (4127 perm/sec)   p_kst 3.283600e-01   p_cons 1.130000e-02   p_joint 1.473000e-01

Joint ci ratio: 2.831832e-02	ci left: 1.462497e-01	ci right 1.504598e-01	k: 16318	n:110000
Cons ci ratio: 1.099754e-01	ci left: 1.078985e-02	ci right 1.205429e-02	k: 1255	n:110000
KS ci ratio: 1.689768e-02	ci left: 3.257336e-01	ci right 3.312937e-01	k: 36136	n:110000
GALNS   110000 perm   27 sec   (4046 perm/sec)   p_kst 3.285091e-01   p_cons 1.140909e-02   p_joint 1.483455e-01

Joint ci ratio: 2.706059e-02	ci left: 1.468239e-01	ci right 1.508598e-01	k: 17860	n:120000
Cons ci ratio: 1.051841e-01	ci left: 1.083948e-02	ci right 1.205097e-02	k: 1372	n:120000
KS ci ratio: 1.616705e-02	ci left: 3.261587e-01	ci right 3.314829e-01	k: 39458	n:120000
GALNS   120000 perm   30 sec   (3969 perm/sec)   p_kst 3.288167e-01   p_cons 1.143333e-02   p_joint 1.488333e-01

Joint ci ratio: 2.701361e-02	ci left: 1.375137e-01	ci right 1.412870e-01	k: 18121	n:130000
Cons ci ratio: 1.015567e-01	ci left: 1.075499e-02	ci right 1.191311e-02	k: 1472	n:130000
KS ci ratio: 1.553233e-02	ci left: 3.262770e-01	ci right 3.313922e-01	k: 42748	n:130000
GALNS   130000 perm   33 sec   (3896 perm/sec)   p_kst 3.288308e-01   p_cons 1.132308e-02   p_joint 1.393923e-01

Joint ci ratio: 2.882502e-02	ci left: 1.150013e-01	ci right 1.183717e-01	k: 16335	n:140000
Cons ci ratio: 9.793459e-02	ci left: 1.075986e-02	ci right 1.187480e-02	k: 1583	n:140000
KS ci ratio: 1.507169e-02	ci left: 3.233165e-01	ci right 3.282335e-01	k: 45608	n:140000
GALNS   140000 perm   37 sec   (3824 perm/sec)   p_kst 3.257714e-01   p_cons 1.130714e-02   p_joint 1.166786e-01

Outputting figure to mutsig2_images.part000000000068/GALNS.3_1625_140000_0.32577_0.011307_0.11668.png
                gene_name: GALNS
               theta_stop: 0.098 
                    nperm: 140000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.011 
      ci_cons_bounds_left: 0.011 
     ci_cons_bounds_right: 0.012 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 66 percent done.
GALNT12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.713657e-02	ci left: 6.667271e-01	ci right 6.851703e-01	k: 6760	n:10000
KS ci ratio: 4.211635e-02	ci left: 4.542871e-01	ci right 4.739338e-01	k: 4641	n:10000
GALNT12   10000 perm   2 sec   (6296 perm/sec)   p_kst 4.641000e-01   p_cons 6.760000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000068/GALNT12.3_1786_10000_0.4641_0.676_1.png
                gene_name: GALNT12
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
GALNT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.339492e-02	ci left: 5.696526e-01	ci right 5.891012e-01	k: 5794	n:10000
Cons ci ratio: 1.344875e-01	ci left: 7.301117e-02	ci right 8.363602e-02	k: 782	n:10000
KS ci ratio: 2.008940e-02	ci left: 7.839105e-01	ci right 7.999191e-01	k: 7920	n:10000
GALNT3   10000 perm   2 sec   (5502 perm/sec)   p_kst 7.920000e-01   p_cons 7.820000e-02   p_joint 5.794000e-01

Joint ci ratio: 2.904824e-02	ci left: 4.696069e-01	ci right 4.834999e-01	k: 9531	n:20000
Cons ci ratio: 9.661324e-02	ci left: 7.236421e-02	ci right 7.975961e-02	k: 1520	n:20000
KS ci ratio: 1.426333e-02	ci left: 7.849445e-01	ci right 7.962709e-01	k: 15813	n:20000
GALNT3   20000 perm   4 sec   (4844 perm/sec)   p_kst 7.906500e-01   p_cons 7.600000e-02   p_joint 4.765500e-01

Outputting figure to mutsig2_images.part000000000068/GALNT3.3_1942_20000_0.79065_0.076_0.47655.png
                gene_name: GALNT3
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.076 
      ci_cons_bounds_left: 0.072 
     ci_cons_bounds_right: 0.080 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.48 

Current progress: 69 percent done.
GALNT8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.817290e-02	ci left: 5.033509e-01	ci right 5.230414e-01	k: 5132	n:10000
Cons ci ratio: 2.603417e-02	ci left: 6.847616e-01	ci right 7.029254e-01	k: 6939	n:10000
KS ci ratio: 5.120650e-02	ci left: 3.599296e-01	ci right 3.789466e-01	k: 3694	n:10000
GALNT8   10000 perm   2 sec   (6166 perm/sec)   p_kst 3.694000e-01   p_cons 6.939000e-01   p_joint 5.132000e-01

Outputting figure to mutsig2_images.part000000000068/GALNT8.3_1958_10000_0.3694_0.6939_0.5132.png
                gene_name: GALNT8
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 71 percent done.
GALNTL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.615640e-02	ci left: 1.640602e-01	ci right 1.789317e-01	k: 1714	n:10000
Cons ci ratio: 1.450035e-01	ci left: 6.314223e-02	ci right 7.311115e-02	k: 680	n:10000
KS ci ratio: 7.463647e-02	ci left: 2.080667e-01	ci right 2.242990e-01	k: 2161	n:10000
GALNTL5   10000 perm   2 sec   (5862 perm/sec)   p_kst 2.161000e-01   p_cons 6.800000e-02   p_joint 1.714000e-01

Joint ci ratio: 7.413374e-02	ci left: 1.180846e-01	ci right 1.272254e-01	k: 2452	n:20000
Cons ci ratio: 1.025756e-01	ci left: 6.454903e-02	ci right 7.157718e-02	k: 1360	n:20000
KS ci ratio: 5.272211e-02	ci left: 2.108086e-01	ci right 2.222740e-01	k: 4330	n:20000
GALNTL5   20000 perm   4 sec   (5147 perm/sec)   p_kst 2.165000e-01   p_cons 6.800000e-02   p_joint 1.226000e-01

Joint ci ratio: 5.529900e-02	ci left: 1.394850e-01	ci right 1.474509e-01	k: 4303	n:30000
Cons ci ratio: 8.354483e-02	ci left: 6.550338e-02	ci right 7.124721e-02	k: 2050	n:30000
KS ci ratio: 4.305816e-02	ci left: 2.117843e-01	ci right 2.211374e-01	k: 6493	n:30000
GALNTL5   30000 perm   6 sec   (4854 perm/sec)   p_kst 2.164333e-01   p_cons 6.833333e-02   p_joint 1.434333e-01

Outputting figure to mutsig2_images.part000000000068/GALNTL5.3_1364_30000_0.21643_0.068333_0.14343.png
                gene_name: GALNTL5
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.068 
      ci_cons_bounds_left: 0.066 
     ci_cons_bounds_right: 0.071 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 72 percent done.
FZD7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.105166e-02	ci left: 6.047779e-01	ci right 6.239554e-01	k: 6144	n:10000
KS ci ratio: 7.422056e-02	ci left: 2.099406e-01	ci right 2.262240e-01	k: 2180	n:10000
FZD7   10000 perm   2 sec   (5976 perm/sec)   p_kst 2.180000e-01   p_cons 6.144000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000068/FZD7.2_1729_10000_0.218_0.6144_1.png
                gene_name: FZD7
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 74 percent done.
FZD9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.723077e-02	ci left: 8.307321e-01	ci right 8.452705e-01	k: 8381	n:10000
Cons ci ratio: 5.610910e-02	ci left: 3.187002e-01	ci right 3.372001e-01	k: 3279	n:10000
KS ci ratio: 3.685760e-02	ci left: 5.208609e-01	ci right 5.405212e-01	k: 5307	n:10000
FZD9   10000 perm   2 sec   (5963 perm/sec)   p_kst 5.307000e-01   p_cons 3.279000e-01   p_joint 8.381000e-01

Outputting figure to mutsig2_images.part000000000068/FZD9.2_1780_10000_0.5307_0.3279_0.8381.png
                gene_name: FZD9
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 76 percent done.
GAB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.463632e-03	ci left: 9.403504e-01	ci right 9.493882e-01	k: 9450	n:10000
Cons ci ratio: 8.252124e-02	ci left: 1.764483e-01	ci right 1.917362e-01	k: 1840	n:10000
KS ci ratio: 7.314920e-02	ci left: 2.148731e-01	ci right 2.312886e-01	k: 2230	n:10000
GAB1   10000 perm   2 sec   (5680 perm/sec)   p_kst 2.230000e-01   p_cons 1.840000e-01   p_joint 9.450000e-01

Outputting figure to mutsig2_images.part000000000068/GAB1.2_2219_10000_0.223_0.184_0.945.png
                gene_name: GAB1
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 78 percent done.
GAB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.654387e-02	ci left: 6.763973e-01	ci right 6.946945e-01	k: 6856	n:10000
Cons ci ratio: 2.115201e-02	ci left: 7.661798e-01	ci right 7.826601e-01	k: 7745	n:10000
KS ci ratio: 7.586907e-02	ci left: 2.026437e-01	ci right 2.187252e-01	k: 2106	n:10000
GAB3   10000 perm   2 sec   (6290 perm/sec)   p_kst 2.106000e-01   p_cons 7.745000e-01   p_joint 6.856000e-01

Outputting figure to mutsig2_images.part000000000068/GAB3.2_1804_10000_0.2106_0.7745_0.6856.png
                gene_name: GAB3
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.69 

Current progress: 79 percent done.
GABPA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.196797e-02	ci left: 7.525160e-01	ci right 7.693318e-01	k: 7610	n:10000
Cons ci ratio: 4.702498e-02	ci left: 4.002380e-01	ci right 4.196145e-01	k: 4099	n:10000
KS ci ratio: 2.195183e-01	ci left: 2.750089e-02	ci right 3.437595e-02	k: 308	n:10000
GABPA   10000 perm   2 sec   (6365 perm/sec)   p_kst 3.080000e-02   p_cons 4.099000e-01   p_joint 7.610000e-01

Joint ci ratio: 2.075194e-02	ci left: 6.341058e-01	ci right 6.474532e-01	k: 12816	n:20000
Cons ci ratio: 3.266734e-02	ci left: 4.117003e-01	ci right 4.254234e-01	k: 8371	n:20000
KS ci ratio: 1.496921e-01	ci left: 3.066372e-02	ci right 3.567321e-02	k: 662	n:20000
GABPA   20000 perm   4 sec   (5669 perm/sec)   p_kst 3.310000e-02   p_cons 4.185500e-01   p_joint 6.408000e-01

Joint ci ratio: 1.697605e-02	ci left: 6.344715e-01	ci right 6.453681e-01	k: 19198	n:30000
Cons ci ratio: 2.673670e-02	ci left: 4.118114e-01	ci right 4.230046e-01	k: 12522	n:30000
KS ci ratio: 1.240085e-01	ci left: 3.023114e-02	ci right 3.426011e-02	k: 966	n:30000
GABPA   30000 perm   6 sec   (5354 perm/sec)   p_kst 3.220000e-02   p_cons 4.174000e-01   p_joint 6.399333e-01

Joint ci ratio: 1.520684e-02	ci left: 6.194573e-01	ci right 6.289746e-01	k: 24969	n:40000
Cons ci ratio: 2.326007e-02	ci left: 4.103649e-01	ci right 4.200474e-01	k: 16608	n:40000
KS ci ratio: 1.074523e-01	ci left: 3.046721e-02	ci right 3.395114e-02	k: 1287	n:40000
GABPA   40000 perm   8 sec   (5149 perm/sec)   p_kst 3.217500e-02   p_cons 4.152000e-01   p_joint 6.242250e-01

Joint ci ratio: 1.353791e-02	ci left: 6.221625e-01	ci right 6.306628e-01	k: 31321	n:50000
Cons ci ratio: 2.076869e-02	ci left: 4.117146e-01	ci right 4.203752e-01	k: 20802	n:50000
KS ci ratio: 9.555795e-02	ci left: 3.100198e-02	ci right 3.413260e-02	k: 1627	n:50000
GABPA   50000 perm   10 sec   (4993 perm/sec)   p_kst 3.254000e-02   p_cons 4.160400e-01   p_joint 6.264200e-01

Outputting figure to mutsig2_images.part000000000068/GABPA.2_1401_50000_0.03254_0.41604_0.62642.png
                gene_name: GABPA
               theta_stop: 0.096 
                    nperm: 50000 
                     p_ks: 0.033 
        ci_ks_bounds_left: 0.031 
       ci_ks_bounds_right: 0.034 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.63 

Current progress: 81 percent done.
GABPB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.243266e-02	ci left: 7.447278e-01	ci right 7.617245e-01	k: 7533	n:10000
Cons ci ratio: 3.689460e-02	ci left: 5.203605e-01	ci right 5.400219e-01	k: 5302	n:10000
KS ci ratio: 3.776252e-02	ci left: 5.087527e-01	ci right 5.284364e-01	k: 5186	n:10000
GABPB1   10000 perm   2 sec   (6301 perm/sec)   p_kst 5.186000e-01   p_cons 5.302000e-01   p_joint 7.533000e-01

Outputting figure to mutsig2_images.part000000000068/GABPB1.2_1268_10000_0.5186_0.5302_0.7533.png
                gene_name: GABPB1
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 83 percent done.
GABPB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.012743e-02	ci left: 9.325769e-01	ci right 9.421664e-01	k: 9375	n:10000
KS ci ratio: 3.533157e-02	ci left: 5.418888e-01	ci right 5.614810e-01	k: 5517	n:10000
GABPB2   10000 perm   2 sec   (6219 perm/sec)   p_kst 5.517000e-01   p_cons 9.375000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000068/GABPB2.2_1379_10000_0.5517_0.9375_1.png
                gene_name: GABPB2
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
GABRD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.708012e-02	ci left: 5.178584e-01	ci right 5.375255e-01	k: 5277	n:10000
KS ci ratio: 6.189121e-02	ci left: 2.773546e-01	ci right 2.951701e-01	k: 2862	n:10000
GABRD   10000 perm   2 sec   (6211 perm/sec)   p_kst 2.862000e-01   p_cons 5.277000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000068/GABRD.2_1395_10000_0.2862_0.5277_1.png
                gene_name: GABRD
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
GABRP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.373175e-02	ci left: 5.647390e-01	ci right 5.842175e-01	k: 5745	n:10000
KS ci ratio: 9.399846e-03	ci left: 9.410771e-01	ci right 9.500611e-01	k: 9457	n:10000
GABRP   10000 perm   2 sec   (6270 perm/sec)   p_kst 9.457000e-01   p_cons 5.745000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000068/GABRP.2_1359_10000_0.9457_0.5745_1.png
                gene_name: GABRP
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
GALC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.327604e-02	ci left: 2.142811e-01	ci right 2.306809e-01	k: 2224	n:10000
Cons ci ratio: 5.488470e-02	ci left: 3.284292e-01	ci right 3.470654e-01	k: 3377	n:10000
KS ci ratio: 1.421137e-01	ci left: 6.565505e-02	ci right 7.579675e-02	k: 706	n:10000
GALC   10000 perm   2 sec   (5653 perm/sec)   p_kst 7.060000e-02   p_cons 3.377000e-01   p_joint 2.224000e-01

Joint ci ratio: 5.204020e-02	ci left: 2.152159e-01	ci right 2.267653e-01	k: 4419	n:20000
Cons ci ratio: 3.751408e-02	ci left: 3.464730e-01	ci right 3.597697e-01	k: 7062	n:20000
KS ci ratio: 9.932497e-02	ci left: 6.865040e-02	ci right 7.587455e-02	k: 1444	n:20000
GALC   20000 perm   4 sec   (5023 perm/sec)   p_kst 7.220000e-02   p_cons 3.531000e-01   p_joint 2.209500e-01

Outputting figure to mutsig2_images.part000000000068/GALC.2_2189_20000_0.0722_0.3531_0.22095.png
                gene_name: GALC
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.076 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 90 percent done.
GALNT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.473089e-02	ci left: 4.245555e-01	ci right 4.440828e-01	k: 4343	n:10000
Cons ci ratio: 2.671637e-02	ci left: 6.735763e-01	ci right 6.919171e-01	k: 6828	n:10000
KS ci ratio: 1.818499e-01	ci left: 4.035041e-02	ci right 4.851765e-02	k: 443	n:10000
GALNT1   10000 perm   2 sec   (6382 perm/sec)   p_kst 4.430000e-02   p_cons 6.828000e-01   p_joint 4.343000e-01

Joint ci ratio: 5.947352e-02	ci left: 1.731161e-01	ci right 1.837775e-01	k: 3568	n:20000
Cons ci ratio: 1.904911e-02	ci left: 6.726801e-01	ci right 6.856678e-01	k: 13584	n:20000
KS ci ratio: 1.324614e-01	ci left: 3.916497e-02	ci right 4.476918e-02	k: 838	n:20000
GALNT1   20000 perm   4 sec   (5520 perm/sec)   p_kst 4.190000e-02   p_cons 6.792000e-01   p_joint 1.784000e-01

Joint ci ratio: 5.076494e-02	ci left: 1.615745e-01	ci right 1.700237e-01	k: 4973	n:30000
Cons ci ratio: 1.556085e-02	ci left: 6.736833e-01	ci right 6.842821e-01	k: 20370	n:30000
KS ci ratio: 1.089481e-01	ci left: 3.910865e-02	ci right 4.364738e-02	k: 1240	n:30000
GALNT1   30000 perm   6 sec   (5204 perm/sec)   p_kst 4.133333e-02   p_cons 6.790000e-01   p_joint 1.657667e-01

Joint ci ratio: 4.459408e-02	ci left: 1.582775e-01	ci right 1.655216e-01	k: 6475	n:40000
Cons ci ratio: 1.320181e-02	ci left: 6.833332e-01	ci right 6.924395e-01	k: 27516	n:40000
KS ci ratio: 9.395801e-02	ci left: 3.973739e-02	ci right 4.367950e-02	k: 1667	n:40000
GALNT1   40000 perm   8 sec   (4979 perm/sec)   p_kst 4.167500e-02   p_cons 6.879000e-01   p_joint 1.618750e-01

Outputting figure to mutsig2_images.part000000000068/GALNT1.2_1724_40000_0.041675_0.6879_0.16187.png
                gene_name: GALNT1
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.042 
        ci_ks_bounds_left: 0.040 
       ci_ks_bounds_right: 0.044 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 91 percent done.
GALNT10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.503224e-02	ci left: 1.384471e-01	ci right 1.523602e-01	k: 1453	n:10000
KS ci ratio: 2.385736e-02	ci left: 7.208794e-01	ci right 7.383866e-01	k: 7297	n:10000
GALNT10   10000 perm   2 sec   (5921 perm/sec)   p_kst 7.297000e-01   p_cons 1.453000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000068/GALNT10.2_1860_10000_0.7297_0.1453_1.png
                gene_name: GALNT10
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
GALNT11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.461939e-02	ci left: 2.602281e-01	ci right 2.777067e-01	k: 2689	n:10000
Cons ci ratio: 2.076422e-02	ci left: 7.726617e-01	ci right 7.889744e-01	k: 7809	n:10000
KS ci ratio: 1.246431e-01	ci left: 8.436377e-02	ci right 9.567638e-02	k: 899	n:10000
GALNT11   10000 perm   2 sec   (5957 perm/sec)   p_kst 8.990000e-02   p_cons 7.809000e-01   p_joint 2.689000e-01

Joint ci ratio: 2.967865e-02	ci left: 4.589170e-01	ci right 4.727929e-01	k: 9317	n:20000
Cons ci ratio: 1.464595e-02	ci left: 7.759597e-01	ci right 7.874583e-01	k: 15635	n:20000
KS ci ratio: 8.898230e-02	ci left: 8.450079e-02	ci right 9.241933e-02	k: 1768	n:20000
GALNT11   20000 perm   4 sec   (5259 perm/sec)   p_kst 8.840000e-02   p_cons 7.817500e-01   p_joint 4.658500e-01

Outputting figure to mutsig2_images.part000000000068/GALNT11.2_1871_20000_0.0884_0.78175_0.46585.png
                gene_name: GALNT11
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.088 
        ci_ks_bounds_left: 0.085 
       ci_ks_bounds_right: 0.092 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.47 

Current progress: 95 percent done.
GALNT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
Cons ci ratio: 1.905474e-01	ci left: 3.672071e-02	ci right 4.454977e-02	k: 405	n:10000
KS ci ratio: 1.385306e+00	ci left: 2.814811e-04	ci right 1.441732e-03	k: 7	n:10000
GALNT2   10000 perm   2 sec   (6083 perm/sec)   p_kst 7.000000e-04   p_cons 4.050000e-02   p_joint 1.000000e-04

Joint ci ratio: 9.795835e-01	ci left: 4.198281e-04	ci right 1.236710e-03	k: 15	n:20000
Cons ci ratio: 1.360556e-01	ci left: 3.713280e-02	ci right 4.260201e-02	k: 796	n:20000
KS ci ratio: 9.795835e-01	ci left: 4.198281e-04	ci right 1.236710e-03	k: 15	n:20000
GALNT2   20000 perm   4 sec   (5315 perm/sec)   p_kst 7.500000e-04   p_cons 3.980000e-02   p_joint 7.500000e-04

Joint ci ratio: 7.153210e-01	ci left: 6.474844e-04	ci right 1.388002e-03	k: 29	n:30000
Cons ci ratio: 1.120449e-01	ci left: 3.699955e-02	ci right 4.142359e-02	k: 1175	n:30000
KS ci ratio: 7.153210e-01	ci left: 6.474844e-04	ci right 1.388002e-03	k: 29	n:30000
GALNT2   30000 perm   6 sec   (5010 perm/sec)   p_kst 9.666667e-04   p_cons 3.916667e-02   p_joint 9.666667e-04

Joint ci ratio: 1.600193e+00	ci left: 4.058837e-05	ci right 2.916840e-04	k: 5	n:40000
Cons ci ratio: 9.758604e-02	ci left: 3.687970e-02	ci right 4.068763e-02	k: 1550	n:40000
KS ci ratio: 6.719803e-01	ci left: 5.679580e-04	ci right 1.158413e-03	k: 33	n:40000
GALNT2   40000 perm   8 sec   (4837 perm/sec)   p_kst 8.250000e-04   p_cons 3.875000e-02   p_joint 1.250000e-04

Joint ci ratio: 6.195523e-01	ci left: 5.547132e-04	ci right 1.066133e-03	k: 39	n:50000
Cons ci ratio: 8.706795e-02	ci left: 3.726116e-02	ci right 4.067263e-02	k: 1947	n:50000
KS ci ratio: 6.195523e-01	ci left: 5.547132e-04	ci right 1.066133e-03	k: 39	n:50000
GALNT2   50000 perm   11 sec   (4685 perm/sec)   p_kst 7.800000e-04   p_cons 3.894000e-02   p_joint 7.800000e-04

Joint ci ratio: 5.715620e-01	ci left: 5.613493e-04	ci right 1.022495e-03	k: 46	n:60000
Cons ci ratio: 7.926343e-02	ci left: 3.761208e-02	ci right 4.073269e-02	k: 2349	n:60000
KS ci ratio: 5.715620e-01	ci left: 5.613493e-04	ci right 1.022495e-03	k: 46	n:60000
GALNT2   60000 perm   13 sec   (4565 perm/sec)   p_kst 7.666667e-04   p_cons 3.915000e-02   p_joint 7.666667e-04

Joint ci ratio: 5.283612e-01	ci left: 5.795724e-04	ci right 1.006429e-03	k: 54	n:70000
Cons ci ratio: 7.353275e-02	ci left: 3.757785e-02	ci right 4.046052e-02	k: 2730	n:70000
KS ci ratio: 5.283612e-01	ci left: 5.795724e-04	ci right 1.006429e-03	k: 54	n:70000
GALNT2   70000 perm   16 sec   (4461 perm/sec)   p_kst 7.714286e-04   p_cons 3.900000e-02   p_joint 7.714286e-04

Joint ci ratio: 4.751648e-01	ci left: 6.491081e-04	ci right 1.063475e-03	k: 67	n:80000
Cons ci ratio: 6.830841e-02	ci left: 3.818532e-02	ci right 4.089820e-02	k: 3162	n:80000
KS ci ratio: 4.751648e-01	ci left: 6.491081e-04	ci right 1.063475e-03	k: 67	n:80000
GALNT2   80000 perm   18 sec   (4357 perm/sec)   p_kst 8.375000e-04   p_cons 3.952500e-02   p_joint 8.375000e-04

Joint ci ratio: 4.586126e-01	ci left: 6.260017e-04	ci right 1.007363e-03	k: 72	n:90000
Cons ci ratio: 6.449979e-02	ci left: 3.814925e-02	ci right 4.070277e-02	k: 3547	n:90000
KS ci ratio: 4.586126e-01	ci left: 6.260017e-04	ci right 1.007363e-03	k: 72	n:90000
GALNT2   90000 perm   21 sec   (4269 perm/sec)   p_kst 8.000000e-04   p_cons 3.941111e-02   p_joint 8.000000e-04

Joint ci ratio: 4.353769e-01	ci left: 6.343996e-04	ci right 9.955718e-04	k: 80	n:100000
Cons ci ratio: 6.119170e-02	ci left: 3.821245e-02	ci right 4.063436e-02	k: 3941	n:100000
KS ci ratio: 4.353769e-01	ci left: 6.343996e-04	ci right 9.955718e-04	k: 80	n:100000
GALNT2   100000 perm   24 sec   (4183 perm/sec)   p_kst 8.000000e-04   p_cons 3.941000e-02   p_joint 8.000000e-04

Joint ci ratio: 4.201000e-01	ci left: 6.253997e-04	ci right 9.654504e-04	k: 86	n:110000
Cons ci ratio: 5.824063e-02	ci left: 3.840136e-02	ci right 4.071390e-02	k: 4350	n:110000
KS ci ratio: 4.201000e-01	ci left: 6.253997e-04	ci right 9.654504e-04	k: 86	n:110000
GALNT2   110000 perm   27 sec   (4104 perm/sec)   p_kst 7.818182e-04   p_cons 3.954545e-02   p_joint 7.818182e-04

Joint ci ratio: 4.020226e-01	ci left: 6.330580e-04	ci right 9.585176e-04	k: 94	n:120000
Cons ci ratio: 5.569125e-02	ci left: 3.854469e-02	ci right 4.076097e-02	k: 4757	n:120000
KS ci ratio: 4.020226e-01	ci left: 6.330580e-04	ci right 9.585176e-04	k: 94	n:120000
GALNT2   120000 perm   30 sec   (4013 perm/sec)   p_kst 7.833333e-04   p_cons 3.964167e-02   p_joint 7.833333e-04

Joint ci ratio: 3.918477e-01	ci left: 6.189826e-04	ci right 9.270690e-04	k: 99	n:130000
Cons ci ratio: 5.356327e-02	ci left: 3.850836e-02	ci right 4.063532e-02	k: 5143	n:130000
KS ci ratio: 3.918477e-01	ci left: 6.189826e-04	ci right 9.270690e-04	k: 99	n:130000
GALNT2   130000 perm   33 sec   (3941 perm/sec)   p_kst 7.615385e-04   p_cons 3.956154e-02   p_joint 7.615385e-04

Joint ci ratio: 3.788145e-01	ci left: 6.199269e-04	ci right 9.156698e-04	k: 106	n:140000
Cons ci ratio: 5.165222e-02	ci left: 3.849272e-02	ci right 4.054069e-02	k: 5531	n:140000
KS ci ratio: 3.788145e-01	ci left: 6.199269e-04	ci right 9.156698e-04	k: 106	n:140000
GALNT2   140000 perm   36 sec   (3870 perm/sec)   p_kst 7.571429e-04   p_cons 3.950714e-02   p_joint 7.571429e-04

Joint ci ratio: 3.622616e-01	ci left: 6.390611e-04	ci right 9.274681e-04	k: 116	n:150000
Cons ci ratio: 4.991019e-02	ci left: 3.851328e-02	ci right 4.049124e-02	k: 5924	n:150000
KS ci ratio: 3.622616e-01	ci left: 6.390611e-04	ci right 9.274681e-04	k: 116	n:150000
GALNT2   150000 perm   39 sec   (3801 perm/sec)   p_kst 7.733333e-04   p_cons 3.949333e-02   p_joint 7.733333e-04

Joint ci ratio: 3.463426e-01	ci left: 6.617552e-04	ci right 9.443408e-04	k: 127	n:160000
Cons ci ratio: 4.821821e-02	ci left: 3.871143e-02	ci right 4.063029e-02	k: 6346	n:160000
KS ci ratio: 3.463426e-01	ci left: 6.617552e-04	ci right 9.443408e-04	k: 127	n:160000
GALNT2   160000 perm   43 sec   (3739 perm/sec)   p_kst 7.937500e-04   p_cons 3.966250e-02   p_joint 7.937500e-04

Joint ci ratio: 3.347722e-01	ci left: 6.712440e-04	ci right 9.462412e-04	k: 136	n:170000
Cons ci ratio: 4.677381e-02	ci left: 3.874767e-02	ci right 4.060924e-02	k: 6744	n:170000
KS ci ratio: 3.347722e-01	ci left: 6.712440e-04	ci right 9.462412e-04	k: 136	n:170000
GALNT2   170000 perm   46 sec   (3679 perm/sec)   p_kst 8.000000e-04   p_cons 3.967059e-02   p_joint 8.000000e-04

Joint ci ratio: 3.220886e-01	ci left: 6.900282e-04	ci right 9.598011e-04	k: 147	n:180000
Cons ci ratio: 4.544857e-02	ci left: 3.878615e-02	ci right 4.059538e-02	k: 7143	n:180000
KS ci ratio: 3.220886e-01	ci left: 6.900282e-04	ci right 9.598011e-04	k: 147	n:180000
GALNT2   180000 perm   50 sec   (3619 perm/sec)   p_kst 8.166667e-04   p_cons 3.968333e-02   p_joint 8.166667e-04

Joint ci ratio: 3.157537e-01	ci left: 6.827620e-04	ci right 9.433842e-04	k: 153	n:190000
Cons ci ratio: 4.418118e-02	ci left: 3.890456e-02	ci right 4.066742e-02	k: 7558	n:190000
KS ci ratio: 3.157537e-01	ci left: 6.827620e-04	ci right 9.433842e-04	k: 153	n:190000
GALNT2   190000 perm   53 sec   (3560 perm/sec)   p_kst 8.052632e-04   p_cons 3.977895e-02   p_joint 8.052632e-04

Joint ci ratio: 3.059743e-01	ci left: 6.947253e-04	ci right 9.501013e-04	k: 163	n:200000
Cons ci ratio: 4.296933e-02	ci left: 3.909093e-02	ci right 4.081244e-02	k: 7989	n:200000
KS ci ratio: 3.059743e-01	ci left: 6.947253e-04	ci right 9.501013e-04	k: 163	n:200000
GALNT2   200000 perm   57 sec   (3504 perm/sec)   p_kst 8.150000e-04   p_cons 3.994500e-02   p_joint 8.150000e-04

Joint ci ratio: 2.928690e-01	ci left: 7.277108e-04	ci right 9.816316e-04	k: 178	n:210000
Cons ci ratio: 4.200031e-02	ci left: 3.899144e-02	ci right 4.066891e-02	k: 8363	n:210000
KS ci ratio: 2.928690e-01	ci left: 7.277108e-04	ci right 9.816316e-04	k: 178	n:210000
GALNT2   210000 perm   61 sec   (3453 perm/sec)   p_kst 8.476190e-04   p_cons 3.982381e-02   p_joint 8.476190e-04

Joint ci ratio: 2.835174e-01	ci left: 7.452380e-04	ci right 9.954871e-04	k: 190	n:220000
Cons ci ratio: 4.101099e-02	ci left: 3.905442e-02	ci right 4.069409e-02	k: 8771	n:220000
KS ci ratio: 2.835174e-01	ci left: 7.452380e-04	ci right 9.954871e-04	k: 190	n:220000
GALNT2   220000 perm   65 sec   (3399 perm/sec)   p_kst 8.636364e-04   p_cons 3.986818e-02   p_joint 8.636364e-04

Joint ci ratio: 2.770647e-01	ci left: 7.492170e-04	ci right 9.940783e-04	k: 199	n:230000
Cons ci ratio: 4.013172e-02	ci left: 3.903054e-02	ci right 4.063326e-02	k: 9160	n:230000
KS ci ratio: 2.770647e-01	ci left: 7.492170e-04	ci right 9.940783e-04	k: 199	n:230000
GALNT2   230000 perm   69 sec   (3350 perm/sec)   p_kst 8.652174e-04   p_cons 3.982609e-02   p_joint 8.652174e-04

Joint ci ratio: 2.730015e-01	ci left: 7.412753e-04	ci right 9.793788e-04	k: 205	n:240000
Cons ci ratio: 3.924679e-02	ci left: 3.912456e-02	ci right 4.069491e-02	k: 9577	n:240000
KS ci ratio: 2.730015e-01	ci left: 7.412753e-04	ci right 9.793788e-04	k: 205	n:240000
GALNT2   240000 perm   73 sec   (3297 perm/sec)   p_kst 8.541667e-04   p_cons 3.990417e-02   p_joint 8.541667e-04

Joint ci ratio: 2.659909e-01	ci left: 7.526526e-04	ci right 9.871682e-04	k: 216	n:250000
Cons ci ratio: 3.845602e-02	ci left: 3.913611e-02	ci right 4.067458e-02	k: 9975	n:250000
KS ci ratio: 2.659909e-01	ci left: 7.526526e-04	ci right 9.871682e-04	k: 216	n:250000
GALNT2   250000 perm   77 sec   (3249 perm/sec)   p_kst 8.640000e-04   p_cons 3.990000e-02   p_joint 8.640000e-04

Joint ci ratio: 2.612197e-01	ci left: 7.524407e-04	ci right 9.819979e-04	k: 224	n:260000
Cons ci ratio: 3.778524e-02	ci left: 3.899843e-02	ci right 4.050416e-02	k: 10334	n:260000
KS ci ratio: 2.612197e-01	ci left: 7.524407e-04	ci right 9.819979e-04	k: 224	n:260000
GALNT2   260000 perm   81 sec   (3200 perm/sec)   p_kst 8.615385e-04   p_cons 3.974615e-02   p_joint 8.615385e-04

Joint ci ratio: 2.561469e-01	ci left: 7.557449e-04	ci right 9.811172e-04	k: 233	n:270000
Cons ci ratio: 3.715379e-02	ci left: 3.886016e-02	ci right 4.033493e-02	k: 10690	n:270000
KS ci ratio: 2.561469e-01	ci left: 7.557449e-04	ci right 9.811172e-04	k: 233	n:270000
GALNT2   270000 perm   86 sec   (3155 perm/sec)   p_kst 8.629630e-04   p_cons 3.959259e-02   p_joint 8.629630e-04

Joint ci ratio: 2.508425e-01	ci left: 7.621999e-04	ci right 9.840552e-04	k: 243	n:280000
Cons ci ratio: 3.647909e-02	ci left: 3.888418e-02	ci right 4.033251e-02	k: 11089	n:280000
KS ci ratio: 2.508425e-01	ci left: 7.621999e-04	ci right 9.840552e-04	k: 243	n:280000
GALNT2   280000 perm   90 sec   (3108 perm/sec)   p_kst 8.678571e-04   p_cons 3.960357e-02   p_joint 8.678571e-04

Joint ci ratio: 2.468291e-01	ci left: 7.617832e-04	ci right 9.794253e-04	k: 251	n:290000
Cons ci ratio: 3.585612e-02	ci left: 3.887259e-02	ci right 4.029525e-02	k: 11478	n:290000
KS ci ratio: 2.468291e-01	ci left: 7.617832e-04	ci right 9.794253e-04	k: 251	n:290000
GALNT2   290000 perm   95 sec   (3066 perm/sec)   p_kst 8.655172e-04   p_cons 3.957931e-02   p_joint 8.655172e-04

Joint ci ratio: 2.434714e-01	ci left: 7.582903e-04	ci right 9.715419e-04	k: 258	n:300000
Cons ci ratio: 3.523929e-02	ci left: 3.891485e-02	ci right 4.031406e-02	k: 11883	n:300000
KS ci ratio: 2.434714e-01	ci left: 7.582903e-04	ci right 9.715419e-04	k: 258	n:300000
GALNT2   300000 perm   99 sec   (3023 perm/sec)   p_kst 8.600000e-04   p_cons 3.961000e-02   p_joint 8.600000e-04

Joint ci ratio: 2.411562e-01	ci left: 7.489787e-04	ci right 9.573090e-04	k: 263	n:310000
Cons ci ratio: 3.471357e-02	ci left: 3.882342e-02	ci right 4.019811e-02	k: 12247	n:310000
KS ci ratio: 2.411562e-01	ci left: 7.489787e-04	ci right 9.573090e-04	k: 263	n:310000
GALNT2   310000 perm   104 sec   (2985 perm/sec)   p_kst 8.483871e-04   p_cons 3.950645e-02   p_joint 8.483871e-04

Joint ci ratio: 2.375835e-01	ci left: 7.490738e-04	ci right 9.538897e-04	k: 271	n:320000
Cons ci ratio: 3.416419e-02	ci left: 3.884014e-02	ci right 4.019322e-02	k: 12644	n:320000
KS ci ratio: 2.375835e-01	ci left: 7.490738e-04	ci right 9.538897e-04	k: 271	n:320000
GALNT2   320000 perm   109 sec   (2946 perm/sec)   p_kst 8.468750e-04   p_cons 3.951250e-02   p_joint 8.468750e-04

Joint ci ratio: 2.333325e-01	ci left: 7.548904e-04	ci right 9.570709e-04	k: 281	n:330000
Cons ci ratio: 3.368045e-02	ci left: 3.876583e-02	ci right 4.009682e-02	k: 13011	n:330000
KS ci ratio: 2.333325e-01	ci left: 7.548904e-04	ci right 9.570709e-04	k: 281	n:330000
GALNT2   330000 perm   113 sec   (2908 perm/sec)   p_kst 8.515152e-04   p_cons 3.942727e-02   p_joint 8.515152e-04

Joint ci ratio: 2.293018e-01	ci left: 7.603955e-04	ci right 9.600345e-04	k: 291	n:340000
Cons ci ratio: 3.317669e-02	ci left: 3.878646e-02	ci right 4.009787e-02	k: 13409	n:340000
KS ci ratio: 2.293018e-01	ci left: 7.603955e-04	ci right 9.600345e-04	k: 291	n:340000
GALNT2   340000 perm   119 sec   (2869 perm/sec)   p_kst 8.558824e-04   p_cons 3.943824e-02   p_joint 8.558824e-04

Joint ci ratio: 2.239932e-01	ci left: 7.764000e-04	ci right 9.748709e-04	k: 305	n:350000
Cons ci ratio: 3.272079e-02	ci left: 3.874653e-02	ci right 4.003825e-02	k: 13786	n:350000
KS ci ratio: 2.239932e-01	ci left: 7.764000e-04	ci right 9.748709e-04	k: 305	n:350000
GALNT2   350000 perm   124 sec   (2833 perm/sec)   p_kst 8.714286e-04   p_cons 3.938857e-02   p_joint 8.714286e-04

Joint ci ratio: 2.211216e-01	ci left: 7.758168e-04	ci right 9.712502e-04	k: 313	n:360000
Cons ci ratio: 3.226185e-02	ci left: 3.875855e-02	ci right 4.003221e-02	k: 14181	n:360000
KS ci ratio: 2.211216e-01	ci left: 7.758168e-04	ci right 9.712502e-04	k: 313	n:360000
GALNT2   360000 perm   129 sec   (2797 perm/sec)   p_kst 8.694444e-04   p_cons 3.939167e-02   p_joint 8.694444e-04

Joint ci ratio: 2.193829e-01	ci left: 7.676164e-04	ci right 9.592586e-04	k: 318	n:370000
Cons ci ratio: 3.179786e-02	ci left: 3.882636e-02	ci right 4.008357e-02	k: 14597	n:370000
KS ci ratio: 2.193829e-01	ci left: 7.676164e-04	ci right 9.592586e-04	k: 318	n:370000
GALNT2   370000 perm   134 sec   (2762 perm/sec)   p_kst 8.594595e-04   p_cons 3.945135e-02   p_joint 8.594595e-04

Joint ci ratio: 2.137587e-01	ci left: 7.897276e-04	ci right 9.811730e-04	k: 335	n:380000
Cons ci ratio: 3.136965e-02	ci left: 3.885155e-02	ci right 4.009232e-02	k: 14998	n:380000
KS ci ratio: 2.137587e-01	ci left: 7.897276e-04	ci right 9.811730e-04	k: 335	n:380000
GALNT2   380000 perm   139 sec   (2727 perm/sec)   p_kst 8.815789e-04   p_cons 3.946842e-02   p_joint 8.815789e-04

Joint ci ratio: 2.103427e-01	ci left: 7.961859e-04	ci right 9.857150e-04	k: 346	n:390000
Cons ci ratio: 3.091858e-02	ci left: 3.897227e-02	ci right 4.019868e-02	k: 15437	n:390000
KS ci ratio: 2.103427e-01	ci left: 7.961859e-04	ci right 9.857150e-04	k: 346	n:390000
GALNT2   390000 perm   145 sec   (2694 perm/sec)   p_kst 8.871795e-04   p_cons 3.958205e-02   p_joint 8.871795e-04

Joint ci ratio: 2.062224e-01	ci left: 8.094565e-04	ci right 9.978942e-04	k: 360	n:400000
Cons ci ratio: 3.050343e-02	ci left: 3.904488e-02	ci right 4.025680e-02	k: 15859	n:400000
KS ci ratio: 2.062224e-01	ci left: 8.094565e-04	ci right 9.978942e-04	k: 360	n:400000
GALNT2   400000 perm   150 sec   (2660 perm/sec)   p_kst 9.000000e-04   p_cons 3.964750e-02   p_joint 9.000000e-04

Joint ci ratio: 2.042522e-01	ci left: 8.059092e-04	ci right 9.915050e-04	k: 367	n:410000
Cons ci ratio: 3.014991e-02	ci left: 3.900025e-02	ci right 4.019651e-02	k: 16234	n:410000
KS ci ratio: 2.042522e-01	ci left: 8.059092e-04	ci right 9.915050e-04	k: 367	n:410000
GALNT2   410000 perm   156 sec   (2627 perm/sec)   p_kst 8.951220e-04   p_cons 3.959512e-02   p_joint 8.951220e-04

Joint ci ratio: 2.023373e-01	ci left: 8.025390e-04	ci right 9.854118e-04	k: 374	n:420000
Cons ci ratio: 2.981214e-02	ci left: 3.894837e-02	ci right 4.012942e-02	k: 16605	n:420000
KS ci ratio: 2.023373e-01	ci left: 8.025390e-04	ci right 9.854118e-04	k: 374	n:420000
GALNT2   420000 perm   162 sec   (2596 perm/sec)   p_kst 8.904762e-04   p_cons 3.953571e-02   p_joint 8.904762e-04

Joint ci ratio: 1.991749e-01	ci left: 8.103799e-04	ci right 9.918028e-04	k: 386	n:430000
Cons ci ratio: 2.947011e-02	ci left: 3.893823e-02	ci right 4.010519e-02	k: 16993	n:430000
KS ci ratio: 1.991749e-01	ci left: 8.103799e-04	ci right 9.918028e-04	k: 386	n:430000
GALNT2   430000 perm   168 sec   (2566 perm/sec)   p_kst 8.976744e-04   p_cons 3.951860e-02   p_joint 8.976744e-04

Joint ci ratio: 1.971478e-01	ci left: 8.092419e-04	ci right 9.883446e-04	k: 394	n:440000
Cons ci ratio: 2.915443e-02	ci left: 3.889026e-02	ci right 4.004309e-02	k: 17364	n:440000
KS ci ratio: 1.971478e-01	ci left: 8.092419e-04	ci right 9.883446e-04	k: 394	n:440000
GALNT2   440000 perm   173 sec   (2538 perm/sec)   p_kst 8.954545e-04   p_cons 3.946364e-02   p_joint 8.954545e-04

Joint ci ratio: 1.949395e-01	ci left: 8.102771e-04	ci right 9.873618e-04	k: 403	n:450000
Cons ci ratio: 2.883769e-02	ci left: 3.887317e-02	ci right 4.001277e-02	k: 17748	n:450000
KS ci ratio: 1.949395e-01	ci left: 8.102771e-04	ci right 9.873618e-04	k: 403	n:450000
GALNT2   450000 perm   179 sec   (2510 perm/sec)   p_kst 8.955556e-04   p_cons 3.944000e-02   p_joint 8.955556e-04

Joint ci ratio: 1.923382e-01	ci left: 8.154164e-04	ci right 9.909681e-04	k: 414	n:460000
Cons ci ratio: 2.852449e-02	ci left: 3.887416e-02	ci right 4.000121e-02	k: 18140	n:460000
KS ci ratio: 1.923382e-01	ci left: 8.154164e-04	ci right 9.909681e-04	k: 414	n:460000
GALNT2   460000 perm   185 sec   (2483 perm/sec)   p_kst 9.000000e-04   p_cons 3.943478e-02   p_joint 9.000000e-04

Joint ci ratio: 1.905109e-01	ci left: 8.142726e-04	ci right 9.877197e-04	k: 422	n:470000
Cons ci ratio: 2.821574e-02	ci left: 3.888997e-02	ci right 4.000508e-02	k: 18539	n:470000
KS ci ratio: 1.905109e-01	ci left: 8.142726e-04	ci right 9.877197e-04	k: 422	n:470000
GALNT2   470000 perm   191 sec   (2457 perm/sec)   p_kst 8.978723e-04   p_cons 3.944468e-02   p_joint 8.978723e-04

Joint ci ratio: 1.887348e-01	ci left: 8.131840e-04	ci right 9.845992e-04	k: 430	n:480000
Cons ci ratio: 2.790377e-02	ci left: 3.894036e-02	ci right 4.004437e-02	k: 18955	n:480000
KS ci ratio: 1.887348e-01	ci left: 8.131840e-04	ci right 9.845992e-04	k: 430	n:480000
GALNT2   480000 perm   197 sec   (2431 perm/sec)   p_kst 8.958333e-04   p_cons 3.948958e-02   p_joint 8.958333e-04

Joint ci ratio: 1.870074e-01	ci left: 8.121471e-04	ci right 9.815990e-04	k: 438	n:490000
Cons ci ratio: 2.762048e-02	ci left: 3.893808e-02	ci right 4.003064e-02	k: 19346	n:490000
KS ci ratio: 1.870074e-01	ci left: 8.121471e-04	ci right 9.815990e-04	k: 438	n:490000
GALNT2   490000 perm   204 sec   (2406 perm/sec)   p_kst 8.938776e-04   p_cons 3.948163e-02   p_joint 8.938776e-04

Joint ci ratio: 1.855344e-01	ci left: 8.092512e-04	ci right 9.766192e-04	k: 445	n:500000
Cons ci ratio: 2.736875e-02	ci left: 3.887236e-02	ci right 3.995298e-02	k: 19705	n:500000
KS ci ratio: 1.855344e-01	ci left: 8.092512e-04	ci right 9.766192e-04	k: 445	n:500000
GALNT2   500000 perm   210 sec   (2382 perm/sec)   p_kst 8.900000e-04   p_cons 3.941000e-02   p_joint 8.900000e-04

Joint ci ratio: 1.826883e-01	ci left: 8.195698e-04	ci right 9.861840e-04	k: 459	n:510000
Cons ci ratio: 2.708166e-02	ci left: 3.892615e-02	ci right 3.999674e-02	k: 20124	n:510000
KS ci ratio: 1.826883e-01	ci left: 8.195698e-04	ci right 9.861840e-04	k: 459	n:510000
GALNT2   510000 perm   216 sec   (2357 perm/sec)   p_kst 9.000000e-04   p_cons 3.945882e-02   p_joint 9.000000e-04

Joint ci ratio: 1.811203e-01	ci left: 8.184929e-04	ci right 9.833034e-04	k: 467	n:520000
Cons ci ratio: 2.681429e-02	ci left: 3.894735e-02	ci right 4.000778e-02	k: 20527	n:520000
KS ci ratio: 1.811203e-01	ci left: 8.184929e-04	ci right 9.833034e-04	k: 467	n:520000
GALNT2   520000 perm   223 sec   (2333 perm/sec)   p_kst 8.980769e-04   p_cons 3.947500e-02   p_joint 8.980769e-04

Joint ci ratio: 1.790282e-01	ci left: 8.228690e-04	ci right 9.864395e-04	k: 478	n:530000
Cons ci ratio: 2.655006e-02	ci left: 3.898093e-02	ci right 4.003166e-02	k: 20937	n:530000
KS ci ratio: 1.790282e-01	ci left: 8.228690e-04	ci right 9.864395e-04	k: 478	n:530000
GALNT2   530000 perm   229 sec   (2310 perm/sec)   p_kst 9.018868e-04   p_cons 3.950377e-02   p_joint 9.018868e-04

Joint ci ratio: 1.766466e-01	ci left: 8.306335e-04	ci right 9.933163e-04	k: 491	n:540000
Cons ci ratio: 2.629413e-02	ci left: 3.901147e-02	ci right 4.005273e-02	k: 21346	n:540000
KS ci ratio: 1.766466e-01	ci left: 8.306335e-04	ci right 9.933163e-04	k: 491	n:540000
GALNT2   540000 perm   236 sec   (2286 perm/sec)   p_kst 9.092593e-04   p_cons 3.952963e-02   p_joint 9.092593e-04

Joint ci ratio: 1.743575e-01	ci left: 8.381295e-04	ci right 9.999292e-04	k: 504	n:550000
Cons ci ratio: 2.607230e-02	ci left: 3.896326e-02	ci right 3.999433e-02	k: 21712	n:550000
KS ci ratio: 1.743575e-01	ci left: 8.381295e-04	ci right 9.999292e-04	k: 504	n:550000
GALNT2   550000 perm   243 sec   (2265 perm/sec)   p_kst 9.163636e-04   p_cons 3.947636e-02   p_joint 9.163636e-04

Joint ci ratio: 1.728243e-01	ci left: 8.385361e-04	ci right 9.988424e-04	k: 513	n:560000
Cons ci ratio: 2.582678e-02	ci left: 3.900198e-02	ci right 4.002422e-02	k: 22126	n:560000
KS ci ratio: 1.728243e-01	ci left: 8.385361e-04	ci right 9.988424e-04	k: 513	n:560000
GALNT2   560000 perm   250 sec   (2243 perm/sec)   p_kst 9.160714e-04   p_cons 3.951071e-02   p_joint 9.160714e-04

Joint ci ratio: 1.716597e-01	ci left: 8.355761e-04	ci right 9.941286e-04	k: 520	n:570000
Cons ci ratio: 2.559871e-02	ci left: 3.900801e-02	ci right 4.002124e-02	k: 22522	n:570000
KS ci ratio: 1.716597e-01	ci left: 8.355761e-04	ci right 9.941286e-04	k: 520	n:570000
GALNT2   570000 perm   257 sec   (2222 perm/sec)   p_kst 9.122807e-04   p_cons 3.951228e-02   p_joint 9.122807e-04

Joint ci ratio: 1.697159e-01	ci left: 8.409756e-04	ci right 9.985609e-04	k: 532	n:580000
Cons ci ratio: 2.535068e-02	ci left: 3.909098e-02	ci right 4.009638e-02	k: 22963	n:580000
KS ci ratio: 1.697159e-01	ci left: 8.409756e-04	ci right 9.985609e-04	k: 532	n:580000
GALNT2   580000 perm   264 sec   (2200 perm/sec)   p_kst 9.172414e-04   p_cons 3.959138e-02   p_joint 9.172414e-04

Joint ci ratio: 1.692411e-01	ci left: 8.315905e-04	ci right 9.869368e-04	k: 535	n:590000
Cons ci ratio: 2.514217e-02	ci left: 3.907347e-02	ci right 4.007004e-02	k: 23346	n:590000
KS ci ratio: 1.692411e-01	ci left: 8.315905e-04	ci right 9.869368e-04	k: 535	n:590000
GALNT2   590000 perm   271 sec   (2179 perm/sec)   p_kst 9.067797e-04   p_cons 3.956949e-02   p_joint 9.067797e-04

Joint ci ratio: 1.683022e-01	ci left: 8.273081e-04	ci right 9.809100e-04	k: 541	n:600000
Cons ci ratio: 2.490650e-02	ci left: 3.915432e-02	ci right 4.014346e-02	k: 23788	n:600000
KS ci ratio: 1.683022e-01	ci left: 8.273081e-04	ci right 9.809100e-04	k: 541	n:600000
GALNT2   600000 perm   278 sec   (2158 perm/sec)   p_kst 9.016667e-04   p_cons 3.964667e-02   p_joint 9.016667e-04

Joint ci ratio: 1.675318e-01	ci left: 8.215977e-04	ci right 9.733707e-04	k: 546	n:610000
Cons ci ratio: 2.470815e-02	ci left: 3.913805e-02	ci right 4.011879e-02	k: 24172	n:610000
KS ci ratio: 1.675318e-01	ci left: 8.215977e-04	ci right 9.733707e-04	k: 546	n:610000
GALNT2   610000 perm   285 sec   (2138 perm/sec)   p_kst 8.950820e-04   p_cons 3.962623e-02   p_joint 8.950820e-04

Joint ci ratio: 1.667719e-01	ci left: 8.160731e-04	ci right 9.660730e-04	k: 551	n:620000
Cons ci ratio: 2.449525e-02	ci left: 3.918166e-02	ci right 4.015491e-02	k: 24593	n:620000
KS ci ratio: 1.667719e-01	ci left: 8.160731e-04	ci right 9.660730e-04	k: 551	n:620000
GALNT2   620000 perm   293 sec   (2118 perm/sec)   p_kst 8.887097e-04   p_cons 3.966613e-02   p_joint 8.887097e-04

Joint ci ratio: 1.657246e-01	ci left: 8.137683e-04	ci right 9.623116e-04	k: 558	n:630000
Cons ci ratio: 2.429839e-02	ci left: 3.919078e-02	ci right 4.015632e-02	k: 24993	n:630000
KS ci ratio: 1.657246e-01	ci left: 8.137683e-04	ci right 9.623116e-04	k: 558	n:630000
GALNT2   630000 perm   300 sec   (2098 perm/sec)   p_kst 8.857143e-04   p_cons 3.967143e-02   p_joint 8.857143e-04

Joint ci ratio: 1.651355e-01	ci left: 8.070442e-04	ci right 9.537843e-04	k: 562	n:640000
Cons ci ratio: 2.410866e-02	ci left: 3.919187e-02	ci right 4.014980e-02	k: 25388	n:640000
KS ci ratio: 1.651355e-01	ci left: 8.070442e-04	ci right 9.537843e-04	k: 562	n:640000
GALNT2   640000 perm   308 sec   (2079 perm/sec)   p_kst 8.781250e-04   p_cons 3.966875e-02   p_joint 8.781250e-04

Joint ci ratio: 1.639747e-01	ci left: 8.064290e-04	ci right 9.519248e-04	k: 570	n:650000
Cons ci ratio: 2.392235e-02	ci left: 3.919602e-02	ci right 4.014655e-02	k: 25785	n:650000
KS ci ratio: 1.639747e-01	ci left: 8.064290e-04	ci right 9.519248e-04	k: 570	n:650000
GALNT2   650000 perm   315 sec   (2061 perm/sec)   p_kst 8.769231e-04   p_cons 3.966923e-02   p_joint 8.769231e-04

Joint ci ratio: 1.634040e-01	ci left: 8.000224e-04	ci right 9.438107e-04	k: 574	n:660000
Cons ci ratio: 2.374879e-02	ci left: 3.917296e-02	ci right 4.011594e-02	k: 26164	n:660000
KS ci ratio: 1.634040e-01	ci left: 8.000224e-04	ci right 9.438107e-04	k: 574	n:660000
GALNT2   660000 perm   323 sec   (2043 perm/sec)   p_kst 8.696970e-04   p_cons 3.964242e-02   p_joint 8.696970e-04

Joint ci ratio: 1.625584e-01	ci left: 7.966717e-04	ci right 9.390443e-04	k: 580	n:670000
Cons ci ratio: 2.355817e-02	ci left: 3.921739e-02	ci right 4.015376e-02	k: 26588	n:670000
KS ci ratio: 1.625584e-01	ci left: 7.966717e-04	ci right 9.390443e-04	k: 580	n:670000
GALNT2   670000 perm   331 sec   (2025 perm/sec)   p_kst 8.656716e-04   p_cons 3.968358e-02   p_joint 8.656716e-04

Joint ci ratio: 1.615880e-01	ci left: 7.948324e-04	ci right 9.359462e-04	k: 587	n:680000
Cons ci ratio: 2.338108e-02	ci left: 3.923130e-02	ci right 4.016086e-02	k: 26992	n:680000
KS ci ratio: 1.615880e-01	ci left: 7.948324e-04	ci right 9.359462e-04	k: 587	n:680000
GALNT2   680000 perm   339 sec   (2008 perm/sec)   p_kst 8.632353e-04   p_cons 3.969412e-02   p_joint 8.632353e-04

Joint ci ratio: 1.607702e-01	ci left: 7.916579e-04	ci right 9.314280e-04	k: 593	n:690000
Cons ci ratio: 2.321676e-02	ci left: 3.921600e-02	ci right 4.013859e-02	k: 27376	n:690000
KS ci ratio: 1.607702e-01	ci left: 7.916579e-04	ci right 9.314280e-04	k: 593	n:690000
GALNT2   690000 perm   347 sec   (1990 perm/sec)   p_kst 8.594203e-04   p_cons 3.967536e-02   p_joint 8.594203e-04

Joint ci ratio: 1.593017e-01	ci left: 7.954336e-04	ci right 9.344648e-04	k: 604	n:700000
Cons ci ratio: 2.304418e-02	ci left: 3.923953e-02	ci right 4.015572e-02	k: 27787	n:700000
KS ci ratio: 1.593017e-01	ci left: 7.954336e-04	ci right 9.344648e-04	k: 604	n:700000
GALNT2   700000 perm   355 sec   (1973 perm/sec)   p_kst 8.628571e-04   p_cons 3.969571e-02   p_joint 8.628571e-04

Joint ci ratio: 1.573621e-01	ci left: 8.045204e-04	ci right 9.432661e-04	k: 619	n:710000
Cons ci ratio: 2.288554e-02	ci left: 3.922880e-02	ci right 4.013834e-02	k: 28174	n:710000
KS ci ratio: 1.573621e-01	ci left: 8.045204e-04	ci right 9.432661e-04	k: 619	n:710000
GALNT2   710000 perm   363 sec   (1957 perm/sec)   p_kst 8.718310e-04   p_cons 3.968169e-02   p_joint 8.718310e-04

Joint ci ratio: 1.567318e-01	ci left: 8.000178e-04	ci right 9.373825e-04	k: 624	n:720000
Cons ci ratio: 2.273717e-02	ci left: 3.919490e-02	ci right 4.009770e-02	k: 28544	n:720000
KS ci ratio: 1.567318e-01	ci left: 8.000178e-04	ci right 9.373825e-04	k: 624	n:720000
GALNT2   720000 perm   371 sec   (1941 perm/sec)   p_kst 8.666667e-04   p_cons 3.964444e-02   p_joint 8.666667e-04

Joint ci ratio: 1.558616e-01	ci left: 7.982726e-04	ci right 9.345055e-04	k: 631	n:730000
Cons ci ratio: 2.258637e-02	ci left: 3.917967e-02	ci right 4.007605e-02	k: 28927	n:730000
KS ci ratio: 1.558616e-01	ci left: 7.982726e-04	ci right 9.345055e-04	k: 631	n:730000
GALNT2   730000 perm   379 sec   (1924 perm/sec)   p_kst 8.643836e-04   p_cons 3.962603e-02   p_joint 8.643836e-04

Joint ci ratio: 1.546428e-01	ci left: 8.004738e-04	ci right 9.359150e-04	k: 641	n:740000
Cons ci ratio: 2.243295e-02	ci left: 3.918368e-02	ci right 4.007398e-02	k: 29324	n:740000
KS ci ratio: 1.546428e-01	ci left: 8.004738e-04	ci right 9.359150e-04	k: 641	n:740000
GALNT2   740000 perm   388 sec   (1909 perm/sec)   p_kst 8.662162e-04   p_cons 3.962703e-02   p_joint 8.662162e-04

Joint ci ratio: 1.539255e-01	ci left: 7.974918e-04	ci right 9.317449e-04	k: 647	n:750000
Cons ci ratio: 2.229473e-02	ci left: 3.914649e-02	ci right 4.003040e-02	k: 29690	n:750000
KS ci ratio: 1.539255e-01	ci left: 7.974918e-04	ci right 9.317449e-04	k: 647	n:750000
GALNT2   750000 perm   396 sec   (1893 perm/sec)   p_kst 8.626667e-04   p_cons 3.958667e-02   p_joint 8.626667e-04

Joint ci ratio: 1.522887e-01	ci left: 8.047141e-04	ci right 9.386111e-04	k: 661	n:760000
Cons ci ratio: 2.214484e-02	ci left: 3.915873e-02	ci right 4.003689e-02	k: 30093	n:760000
KS ci ratio: 1.522887e-01	ci left: 8.047141e-04	ci right 9.386111e-04	k: 661	n:760000
GALNT2   760000 perm   405 sec   (1877 perm/sec)   p_kst 8.697368e-04   p_cons 3.959605e-02   p_joint 8.697368e-04

Joint ci ratio: 1.510387e-01	ci left: 8.080069e-04	ci right 9.412486e-04	k: 672	n:770000
Cons ci ratio: 2.200131e-02	ci left: 3.915904e-02	ci right 4.003145e-02	k: 30487	n:770000
KS ci ratio: 1.510387e-01	ci left: 8.080069e-04	ci right 9.412486e-04	k: 672	n:770000
GALNT2   770000 perm   413 sec   (1862 perm/sec)   p_kst 8.727273e-04   p_cons 3.959351e-02   p_joint 8.727273e-04

Joint ci ratio: 1.507038e-01	ci left: 8.013486e-04	ci right 9.331728e-04	k: 675	n:780000
Cons ci ratio: 2.186275e-02	ci left: 3.915170e-02	ci right 4.001839e-02	k: 30875	n:780000
KS ci ratio: 1.507038e-01	ci left: 8.013486e-04	ci right 9.331728e-04	k: 675	n:780000
GALNT2   780000 perm   422 sec   (1847 perm/sec)   p_kst 8.653846e-04   p_cons 3.958333e-02   p_joint 8.653846e-04

Joint ci ratio: 1.497105e-01	ci left: 8.021692e-04	ci right 9.331808e-04	k: 684	n:790000
Cons ci ratio: 2.172099e-02	ci left: 3.916472e-02	ci right 4.002600e-02	k: 31279	n:790000
KS ci ratio: 1.497105e-01	ci left: 8.021692e-04	ci right 9.331808e-04	k: 684	n:790000
GALNT2   790000 perm   431 sec   (1833 perm/sec)   p_kst 8.658228e-04   p_cons 3.959367e-02   p_joint 8.658228e-04

Joint ci ratio: 1.485225e-01	ci left: 8.053792e-04	ci right 9.357785e-04	k: 695	n:800000
Cons ci ratio: 2.158160e-02	ci left: 3.917867e-02	ci right 4.003466e-02	k: 31684	n:800000
KS ci ratio: 1.485225e-01	ci left: 8.053792e-04	ci right 9.357785e-04	k: 695	n:800000
GALNT2   800000 perm   440 sec   (1818 perm/sec)   p_kst 8.687500e-04   p_cons 3.960500e-02   p_joint 8.687500e-04

Joint ci ratio: 1.476763e-01	ci left: 8.049468e-04	ci right 9.344680e-04	k: 703	n:810000
Cons ci ratio: 2.145042e-02	ci left: 3.917265e-02	ci right 4.002324e-02	k: 32073	n:810000
KS ci ratio: 1.476763e-01	ci left: 8.049468e-04	ci right 9.344680e-04	k: 703	n:810000
GALNT2   810000 perm   449 sec   (1802 perm/sec)   p_kst 8.679012e-04   p_cons 3.959630e-02   p_joint 8.679012e-04

Joint ci ratio: 1.469476e-01	ci left: 8.033523e-04	ci right 9.319231e-04	k: 710	n:820000
Cons ci ratio: 2.131546e-02	ci left: 3.918862e-02	ci right 4.003414e-02	k: 32480	n:820000
KS ci ratio: 1.469476e-01	ci left: 8.033523e-04	ci right 9.319231e-04	k: 710	n:820000
GALNT2   820000 perm   458 sec   (1788 perm/sec)   p_kst 8.658537e-04   p_cons 3.960976e-02   p_joint 8.658537e-04

Joint ci ratio: 1.463317e-01	ci left: 8.006369e-04	ci right 9.281892e-04	k: 716	n:830000
Cons ci ratio: 2.119006e-02	ci left: 3.917906e-02	ci right 4.001934e-02	k: 32866	n:830000
KS ci ratio: 1.463317e-01	ci left: 8.006369e-04	ci right 9.281892e-04	k: 716	n:830000
GALNT2   830000 perm   468 sec   (1775 perm/sec)   p_kst 8.626506e-04   p_cons 3.959759e-02   p_joint 8.626506e-04

Joint ci ratio: 1.454219e-01	ci left: 8.014288e-04	ci right 9.282444e-04	k: 725	n:840000
Cons ci ratio: 2.105794e-02	ci left: 3.920172e-02	ci right 4.003718e-02	k: 33279	n:840000
KS ci ratio: 1.454219e-01	ci left: 8.014288e-04	ci right 9.282444e-04	k: 725	n:840000
GALNT2   840000 perm   477 sec   (1760 perm/sec)   p_kst 8.630952e-04   p_cons 3.961786e-02   p_joint 8.630952e-04

Joint ci ratio: 1.447260e-01	ci left: 7.999365e-04	ci right 9.258579e-04	k: 732	n:850000
Cons ci ratio: 2.093798e-02	ci left: 3.918874e-02	ci right 4.001911e-02	k: 33662	n:850000
KS ci ratio: 1.447260e-01	ci left: 7.999365e-04	ci right 9.258579e-04	k: 732	n:850000
GALNT2   850000 perm   487 sec   (1746 perm/sec)   p_kst 8.611765e-04   p_cons 3.960235e-02   p_joint 8.611765e-04

Joint ci ratio: 1.436519e-01	ci left: 8.029643e-04	ci right 9.283439e-04	k: 743	n:860000
Cons ci ratio: 2.082163e-02	ci left: 3.917029e-02	ci right 3.999560e-02	k: 34040	n:860000
KS ci ratio: 1.436519e-01	ci left: 8.029643e-04	ci right 9.283439e-04	k: 743	n:860000
GALNT2   860000 perm   496 sec   (1732 perm/sec)   p_kst 8.639535e-04   p_cons 3.958140e-02   p_joint 8.639535e-04

Joint ci ratio: 1.430764e-01	ci left: 8.003839e-04	ci right 9.248171e-04	k: 749	n:870000
Cons ci ratio: 2.070657e-02	ci left: 3.915457e-02	ci right 3.997494e-02	k: 34420	n:870000
KS ci ratio: 1.430764e-01	ci left: 8.003839e-04	ci right 9.248171e-04	k: 749	n:870000
GALNT2   870000 perm   506 sec   (1719 perm/sec)   p_kst 8.609195e-04   p_cons 3.956322e-02   p_joint 8.609195e-04

Joint ci ratio: 1.425077e-01	ci left: 7.978632e-04	ci right 9.213695e-04	k: 755	n:880000
Cons ci ratio: 2.059741e-02	ci left: 3.912452e-02	ci right 3.993988e-02	k: 34787	n:880000
KS ci ratio: 1.425077e-01	ci left: 7.978632e-04	ci right 9.213695e-04	k: 755	n:880000
GALNT2   880000 perm   516 sec   (1705 perm/sec)   p_kst 8.579545e-04   p_cons 3.953068e-02   p_joint 8.579545e-04

Joint ci ratio: 1.417597e-01	ci left: 7.975675e-04	ci right 9.203253e-04	k: 763	n:890000
Cons ci ratio: 2.047904e-02	ci left: 3.913540e-02	ci right 3.994625e-02	k: 35190	n:890000
KS ci ratio: 1.417597e-01	ci left: 7.975675e-04	ci right 9.203253e-04	k: 763	n:890000
GALNT2   890000 perm   526 sec   (1692 perm/sec)   p_kst 8.573034e-04   p_cons 3.953933e-02   p_joint 8.573034e-04

Joint ci ratio: 1.412065e-01	ci left: 7.951363e-04	ci right 9.170020e-04	k: 769	n:900000
Cons ci ratio: 2.035406e-02	ci left: 3.917812e-02	ci right 3.998485e-02	k: 35622	n:900000
KS ci ratio: 1.412065e-01	ci left: 7.951363e-04	ci right 9.170020e-04	k: 769	n:900000
GALNT2   900000 perm   536 sec   (1679 perm/sec)   p_kst 8.544444e-04   p_cons 3.958000e-02   p_joint 8.544444e-04

Joint ci ratio: 1.404786e-01	ci left: 7.948799e-04	ci right 9.160259e-04	k: 777	n:910000
Cons ci ratio: 2.023835e-02	ci left: 3.919367e-02	ci right 3.999608e-02	k: 36030	n:910000
KS ci ratio: 1.404786e-01	ci left: 7.948799e-04	ci right 9.160259e-04	k: 777	n:910000
GALNT2   910000 perm   546 sec   (1666 perm/sec)   p_kst 8.538462e-04   p_cons 3.959341e-02   p_joint 8.538462e-04

Joint ci ratio: 1.396731e-01	ci left: 7.956797e-04	ci right 9.161943e-04	k: 786	n:920000
Cons ci ratio: 2.013667e-02	ci left: 3.916347e-02	ci right 3.996118e-02	k: 36396	n:920000
KS ci ratio: 1.396731e-01	ci left: 7.956797e-04	ci right 9.161943e-04	k: 786	n:920000
GALNT2   920000 perm   556 sec   (1653 perm/sec)   p_kst 8.543478e-04   p_cons 3.956087e-02   p_joint 8.543478e-04

Joint ci ratio: 1.390561e-01	ci left: 7.943884e-04	ci right 9.141319e-04	k: 793	n:930000
Cons ci ratio: 2.002830e-02	ci left: 3.916495e-02	ci right 3.995835e-02	k: 36791	n:930000
KS ci ratio: 1.390561e-01	ci left: 7.943884e-04	ci right 9.141319e-04	k: 793	n:930000
GALNT2   930000 perm   567 sec   (1642 perm/sec)   p_kst 8.526882e-04   p_cons 3.956022e-02   p_joint 8.526882e-04

Joint ci ratio: 1.386206e-01	ci left: 7.910718e-04	ci right 9.099110e-04	k: 798	n:940000
Cons ci ratio: 1.991607e-02	ci left: 3.918759e-02	ci right 3.997695e-02	k: 37206	n:940000
KS ci ratio: 1.386206e-01	ci left: 7.910718e-04	ci right 9.099110e-04	k: 798	n:940000
GALNT2   940000 perm   577 sec   (1630 perm/sec)   p_kst 8.489362e-04   p_cons 3.958085e-02   p_joint 8.489362e-04

Joint ci ratio: 1.378464e-01	ci left: 7.918908e-04	ci right 9.101341e-04	k: 807	n:950000
Cons ci ratio: 1.982081e-02	ci left: 3.915215e-02	ci right 3.993698e-02	k: 37566	n:950000
KS ci ratio: 1.378464e-01	ci left: 7.918908e-04	ci right 9.101341e-04	k: 807	n:950000
GALNT2   950000 perm   587 sec   (1618 perm/sec)   p_kst 8.494737e-04   p_cons 3.954316e-02   p_joint 8.494737e-04

Joint ci ratio: 1.373376e-01	ci left: 7.896767e-04	ci right 9.071187e-04	k: 813	n:960000
Cons ci ratio: 1.972500e-02	ci left: 3.912471e-02	ci right 3.990515e-02	k: 37933	n:960000
KS ci ratio: 1.373376e-01	ci left: 7.896767e-04	ci right 9.071187e-04	k: 813	n:960000
GALNT2   960000 perm   598 sec   (1606 perm/sec)   p_kst 8.468750e-04   p_cons 3.951354e-02   p_joint 8.468750e-04

Joint ci ratio: 1.365016e-01	ci left: 7.914919e-04	ci right 9.084291e-04	k: 823	n:970000
Cons ci ratio: 1.962230e-02	ci left: 3.912965e-02	ci right 3.990609e-02	k: 38331	n:970000
KS ci ratio: 1.365016e-01	ci left: 7.914919e-04	ci right 9.084291e-04	k: 823	n:970000
GALNT2   970000 perm   608 sec   (1595 perm/sec)   p_kst 8.484536e-04   p_cons 3.951649e-02   p_joint 8.484536e-04

Joint ci ratio: 1.360075e-01	ci left: 7.893291e-04	ci right 9.054905e-04	k: 829	n:980000
Cons ci ratio: 1.952224e-02	ci left: 3.913045e-02	ci right 3.990289e-02	k: 38725	n:980000
KS ci ratio: 1.360075e-01	ci left: 7.893291e-04	ci right 9.054905e-04	k: 829	n:980000
GALNT2   980000 perm   619 sec   (1584 perm/sec)   p_kst 8.459184e-04   p_cons 3.951531e-02   p_joint 8.459184e-04

Joint ci ratio: 1.347945e-01	ci left: 7.959946e-04	ci right 9.120083e-04	k: 844	n:990000
Cons ci ratio: 1.942524e-02	ci left: 3.912520e-02	ci right 3.989366e-02	k: 39113	n:990000
KS ci ratio: 1.347945e-01	ci left: 7.959946e-04	ci right 9.120083e-04	k: 844	n:990000
GALNT2   990000 perm   630 sec   (1572 perm/sec)   p_kst 8.525253e-04   p_cons 3.950808e-02   p_joint 8.525253e-04

Joint ci ratio: 1.341609e-01	ci left: 7.957655e-04	ci right 9.111572e-04	k: 852	n:1000000
Cons ci ratio: 1.932636e-02	ci left: 3.913301e-02	ci right 3.989767e-02	k: 39514	n:1000000
KS ci ratio: 1.341609e-01	ci left: 7.957655e-04	ci right 9.111572e-04	k: 852	n:1000000
GALNT2   1000000 perm   641 sec   (1561 perm/sec)   p_kst 8.520000e-04   p_cons 3.951400e-02   p_joint 8.520000e-04

Joint ci ratio: 1.331498e-01	ci left: 8.003277e-04	ci right 9.154371e-04	k: 865	n:1010000
Cons ci ratio: 1.923275e-02	ci left: 3.912588e-02	ci right 3.988666e-02	k: 39900	n:1010000
KS ci ratio: 1.331498e-01	ci left: 8.003277e-04	ci right 9.154371e-04	k: 865	n:1010000
GALNT2   1010000 perm   652 sec   (1550 perm/sec)   p_kst 8.564356e-04   p_cons 3.950495e-02   p_joint 8.564356e-04

Joint ci ratio: 1.325391e-01	ci left: 8.000638e-04	ci right 9.145659e-04	k: 873	n:1020000
Cons ci ratio: 1.913133e-02	ci left: 3.915502e-02	ci right 3.991230e-02	k: 40323	n:1020000
KS ci ratio: 1.325391e-01	ci left: 8.000638e-04	ci right 9.145659e-04	k: 873	n:1020000
GALNT2   1020000 perm   662 sec   (1540 perm/sec)   p_kst 8.558824e-04   p_cons 3.953235e-02   p_joint 8.558824e-04

Joint ci ratio: 1.320116e-01	ci left: 7.988674e-04	ci right 9.127076e-04	k: 880	n:1030000
Cons ci ratio: 1.903637e-02	ci left: 3.916427e-02	ci right 3.991793e-02	k: 40726	n:1030000
KS ci ratio: 1.320116e-01	ci left: 7.988674e-04	ci right 9.127076e-04	k: 880	n:1030000
GALNT2   1030000 perm   674 sec   (1529 perm/sec)   p_kst 8.543689e-04   p_cons 3.953981e-02   p_joint 8.543689e-04

Joint ci ratio: 1.310480e-01	ci left: 8.032748e-04	ci right 9.168425e-04	k: 893	n:1040000
Cons ci ratio: 1.894592e-02	ci left: 3.916091e-02	ci right 3.991089e-02	k: 41116	n:1040000
KS ci ratio: 1.310480e-01	ci left: 8.032748e-04	ci right 9.168425e-04	k: 893	n:1040000
GALNT2   1040000 perm   684 sec   (1519 perm/sec)   p_kst 8.586538e-04   p_cons 3.953462e-02   p_joint 8.586538e-04

Joint ci ratio: 1.305380e-01	ci left: 8.020730e-04	ci right 9.149953e-04	k: 900	n:1050000
Cons ci ratio: 1.885061e-02	ci left: 3.918227e-02	ci right 3.992884e-02	k: 41532	n:1050000
KS ci ratio: 1.305380e-01	ci left: 8.020730e-04	ci right 9.149953e-04	k: 900	n:1050000
GALNT2   1050000 perm   695 sec   (1510 perm/sec)   p_kst 8.571429e-04   p_cons 3.955429e-02   p_joint 8.571429e-04

Joint ci ratio: 1.299624e-01	ci left: 8.018076e-04	ci right 9.141563e-04	k: 908	n:1060000
Cons ci ratio: 1.876417e-02	ci left: 3.917319e-02	ci right 3.991613e-02	k: 41916	n:1060000
KS ci ratio: 1.299624e-01	ci left: 8.018076e-04	ci right 9.141563e-04	k: 908	n:1060000
GALNT2   1060000 perm   706 sec   (1500 perm/sec)   p_kst 8.566038e-04   p_cons 3.954340e-02   p_joint 8.566038e-04

Joint ci ratio: 1.293237e-01	ci left: 8.024525e-04	ci right 9.142966e-04	k: 917	n:1070000
Cons ci ratio: 1.868259e-02	ci left: 3.914939e-02	ci right 3.988862e-02	k: 42284	n:1070000
KS ci ratio: 1.293237e-01	ci left: 8.024525e-04	ci right 9.142966e-04	k: 917	n:1070000
GALNT2   1070000 perm   718 sec   (1491 perm/sec)   p_kst 8.570093e-04   p_cons 3.951776e-02   p_joint 8.570093e-04

Joint ci ratio: 1.286249e-01	ci left: 8.039829e-04	ci right 9.153887e-04	k: 927	n:1080000
Cons ci ratio: 1.860003e-02	ci left: 3.913434e-02	ci right 3.986998e-02	k: 42661	n:1080000
KS ci ratio: 1.286249e-01	ci left: 8.039829e-04	ci right 9.153887e-04	k: 927	n:1080000
GALNT2   1080000 perm   729 sec   (1481 perm/sec)   p_kst 8.583333e-04   p_cons 3.950093e-02   p_joint 8.583333e-04

Joint ci ratio: 1.276652e-01	ci left: 8.090394e-04	ci right 9.202460e-04	k: 941	n:1090000
Cons ci ratio: 1.851697e-02	ci left: 3.912597e-02	ci right 3.985813e-02	k: 43045	n:1090000
KS ci ratio: 1.276652e-01	ci left: 8.090394e-04	ci right 9.202460e-04	k: 941	n:1090000
GALNT2   1090000 perm   741 sec   (1472 perm/sec)   p_kst 8.633028e-04   p_cons 3.949083e-02   p_joint 8.633028e-04

Joint ci ratio: 1.271936e-01	ci left: 8.078452e-04	ci right 9.184466e-04	k: 948	n:1100000
Cons ci ratio: 1.842377e-02	ci left: 3.916391e-02	ci right 3.989306e-02	k: 43480	n:1100000
KS ci ratio: 1.271936e-01	ci left: 8.078452e-04	ci right 9.184466e-04	k: 948	n:1100000
GALNT2   1100000 perm   752 sec   (1462 perm/sec)   p_kst 8.618182e-04   p_cons 3.952727e-02   p_joint 8.618182e-04

Joint ci ratio: 1.265287e-01	ci left: 8.092905e-04	ci right 9.194670e-04	k: 958	n:1110000
Cons ci ratio: 1.833956e-02	ci left: 3.916979e-02	ci right 3.989568e-02	k: 43880	n:1110000
KS ci ratio: 1.265287e-01	ci left: 8.092905e-04	ci right 9.194670e-04	k: 958	n:1110000
GALNT2   1110000 perm   764 sec   (1453 perm/sec)   p_kst 8.630631e-04   p_cons 3.953153e-02   p_joint 8.630631e-04

Joint ci ratio: 1.258740e-01	ci left: 8.107114e-04	ci right 9.204677e-04	k: 968	n:1120000
Cons ci ratio: 1.825672e-02	ci left: 3.917468e-02	ci right 3.989735e-02	k: 44279	n:1120000
KS ci ratio: 1.258740e-01	ci left: 8.107114e-04	ci right 9.204677e-04	k: 968	n:1120000
GALNT2   1120000 perm   776 sec   (1444 perm/sec)   p_kst 8.642857e-04   p_cons 3.953482e-02   p_joint 8.642857e-04

Joint ci ratio: 1.252294e-01	ci left: 8.121086e-04	ci right 9.214493e-04	k: 978	n:1130000
Cons ci ratio: 1.817329e-02	ci left: 3.918654e-02	ci right 3.990609e-02	k: 44686	n:1130000
KS ci ratio: 1.252294e-01	ci left: 8.121086e-04	ci right 9.214493e-04	k: 978	n:1130000
GALNT2   1130000 perm   787 sec   (1435 perm/sec)   p_kst 8.654867e-04   p_cons 3.954513e-02   p_joint 8.654867e-04

Joint ci ratio: 1.246577e-01	ci left: 8.126329e-04	ci right 9.215077e-04	k: 987	n:1140000
Cons ci ratio: 1.809622e-02	ci left: 3.917637e-02	ci right 3.989264e-02	k: 45068	n:1140000
KS ci ratio: 1.246577e-01	ci left: 8.126329e-04	ci right 9.215077e-04	k: 987	n:1140000
GALNT2   1140000 perm   799 sec   (1426 perm/sec)   p_kst 8.657895e-04   p_cons 3.953333e-02   p_joint 8.657895e-04

Joint ci ratio: 1.242811e-01	ci left: 8.106214e-04	ci right 9.188745e-04	k: 993	n:1150000
Cons ci ratio: 1.801785e-02	ci left: 3.917590e-02	ci right 3.988903e-02	k: 45461	n:1150000
KS ci ratio: 1.242811e-01	ci left: 8.106214e-04	ci right 9.188745e-04	k: 993	n:1150000
GALNT2   1150000 perm   812 sec   (1417 perm/sec)   p_kst 8.634783e-04   p_cons 3.953130e-02   p_joint 8.634783e-04

Joint ci ratio: 1.237840e-01	ci left: 8.103158e-04	ci right 9.180636e-04	k: 1001	n:1160000
Cons ci ratio: 1.794172e-02	ci left: 3.917029e-02	ci right 3.988028e-02	k: 45848	n:1160000
KS ci ratio: 1.237840e-01	ci left: 8.103158e-04	ci right 9.180636e-04	k: 1001	n:1160000
GALNT2   1160000 perm   824 sec   (1407 perm/sec)   p_kst 8.629310e-04   p_cons 3.952414e-02   p_joint 8.629310e-04

Joint ci ratio: 1.231708e-01	ci left: 8.116731e-04	ci right 9.190277e-04	k: 1011	n:1170000
Cons ci ratio: 1.786412e-02	ci left: 3.917500e-02	ci right 3.988198e-02	k: 46247	n:1170000
KS ci ratio: 1.231708e-01	ci left: 8.116731e-04	ci right 9.190277e-04	k: 1011	n:1170000
GALNT2   1170000 perm   837 sec   (1399 perm/sec)   p_kst 8.641026e-04   p_cons 3.952735e-02   p_joint 8.641026e-04

Joint ci ratio: 1.227471e-01	ci left: 8.105442e-04	ci right 9.173539e-04	k: 1018	n:1180000
Cons ci ratio: 1.778793e-02	ci left: 3.917795e-02	ci right 3.988193e-02	k: 46644	n:1180000
KS ci ratio: 1.227471e-01	ci left: 8.105442e-04	ci right 9.173539e-04	k: 1018	n:1180000
GALNT2   1180000 perm   849 sec   (1390 perm/sec)   p_kst 8.627119e-04   p_cons 3.952881e-02   p_joint 8.627119e-04

Joint ci ratio: 1.223277e-01	ci left: 8.094350e-04	ci right 9.157077e-04	k: 1025	n:1190000
Cons ci ratio: 1.771505e-02	ci left: 3.917082e-02	ci right 3.987176e-02	k: 47029	n:1190000
KS ci ratio: 1.223277e-01	ci left: 8.094350e-04	ci right 9.157077e-04	k: 1025	n:1190000
GALNT2   1190000 perm   862 sec   (1381 perm/sec)   p_kst 8.613445e-04   p_cons 3.952017e-02   p_joint 8.613445e-04

Joint ci ratio: 1.215013e-01	ci left: 8.140007e-04	ci right 9.200989e-04	k: 1039	n:1200000
Cons ci ratio: 1.763764e-02	ci left: 3.918705e-02	ci right 3.988518e-02	k: 47442	n:1200000
KS ci ratio: 1.215013e-01	ci left: 8.140007e-04	ci right 9.200989e-04	k: 1039	n:1200000
GALNT2   1200000 perm   874 sec   (1373 perm/sec)   p_kst 8.658333e-04   p_cons 3.953500e-02   p_joint 8.658333e-04

Joint ci ratio: 1.210945e-01	ci left: 8.128830e-04	ci right 9.184554e-04	k: 1046	n:1210000
Cons ci ratio: 1.757481e-02	ci left: 3.914458e-02	ci right 3.983945e-02	k: 47784	n:1210000
KS ci ratio: 1.210945e-01	ci left: 8.128830e-04	ci right 9.184554e-04	k: 1046	n:1210000
GALNT2   1210000 perm   887 sec   (1364 perm/sec)   p_kst 8.644628e-04   p_cons 3.949091e-02   p_joint 8.644628e-04

Joint ci ratio: 1.204633e-01	ci left: 8.149640e-04	ci right 9.202157e-04	k: 1057	n:1220000
Cons ci ratio: 1.750243e-02	ci left: 3.914689e-02	ci right 3.983891e-02	k: 48180	n:1220000
KS ci ratio: 1.204633e-01	ci left: 8.149640e-04	ci right 9.202157e-04	k: 1057	n:1220000
GALNT2   1220000 perm   900 sec   (1356 perm/sec)   p_kst 8.663934e-04   p_cons 3.949180e-02   p_joint 8.663934e-04

Joint ci ratio: 1.201798e-01	ci left: 8.122809e-04	ci right 9.169217e-04	k: 1062	n:1230000
Cons ci ratio: 1.743355e-02	ci left: 3.913783e-02	ci right 3.982694e-02	k: 48562	n:1230000
KS ci ratio: 1.201798e-01	ci left: 8.122809e-04	ci right 9.169217e-04	k: 1062	n:1230000
GALNT2   1230000 perm   912 sec   (1348 perm/sec)   p_kst 8.634146e-04   p_cons 3.948130e-02   p_joint 8.634146e-04

Joint ci ratio: 1.196742e-01	ci left: 8.127706e-04	ci right 9.170028e-04	k: 1071	n:1240000
Cons ci ratio: 1.736751e-02	ci left: 3.912009e-02	ci right 3.980625e-02	k: 48933	n:1240000
KS ci ratio: 1.196742e-01	ci left: 8.127706e-04	ci right 9.170028e-04	k: 1071	n:1240000
GALNT2   1240000 perm   925 sec   (1340 perm/sec)   p_kst 8.637097e-04   p_cons 3.946210e-02   p_joint 8.637097e-04

Joint ci ratio: 1.191750e-01	ci left: 8.132534e-04	ci right 9.170818e-04	k: 1080	n:1250000
Cons ci ratio: 1.729711e-02	ci left: 3.912495e-02	ci right 3.980839e-02	k: 49332	n:1250000
KS ci ratio: 1.191750e-01	ci left: 8.132534e-04	ci right 9.170818e-04	k: 1080	n:1250000
GALNT2   1250000 perm   938 sec   (1333 perm/sec)   p_kst 8.640000e-04   p_cons 3.946560e-02   p_joint 8.640000e-04

Joint ci ratio: 1.187365e-01	ci left: 8.129593e-04	ci right 9.163414e-04	k: 1088	n:1260000
Cons ci ratio: 1.723422e-02	ci left: 3.910049e-02	ci right 3.978099e-02	k: 49694	n:1260000
KS ci ratio: 1.187365e-01	ci left: 8.129593e-04	ci right 9.163414e-04	k: 1088	n:1260000
GALNT2   1260000 perm   951 sec   (1325 perm/sec)   p_kst 8.634921e-04   p_cons 3.943968e-02   p_joint 8.634921e-04

Joint ci ratio: 1.181950e-01	ci left: 8.141987e-04	ci right 9.172333e-04	k: 1098	n:1270000
Cons ci ratio: 1.717131e-02	ci left: 3.907956e-02	ci right 3.975719e-02	k: 50060	n:1270000
KS ci ratio: 1.181950e-01	ci left: 8.141987e-04	ci right 9.172333e-04	k: 1098	n:1270000
GALNT2   1270000 perm   964 sec   (1318 perm/sec)   p_kst 8.645669e-04   p_cons 3.941732e-02   p_joint 8.645669e-04

Joint ci ratio: 1.177140e-01	ci left: 8.146616e-04	ci right 9.173060e-04	k: 1107	n:1280000
Cons ci ratio: 1.710360e-02	ci left: 3.908308e-02	ci right 3.975807e-02	k: 50457	n:1280000
KS ci ratio: 1.177140e-01	ci left: 8.146616e-04	ci right 9.173060e-04	k: 1107	n:1280000
GALNT2   1280000 perm   977 sec   (1311 perm/sec)   p_kst 8.648438e-04   p_cons 3.941953e-02   p_joint 8.648438e-04

Joint ci ratio: 1.172388e-01	ci left: 8.151182e-04	ci right 9.173768e-04	k: 1116	n:1290000
Cons ci ratio: 1.703408e-02	ci left: 3.909813e-02	ci right 3.977061e-02	k: 50869	n:1290000
KS ci ratio: 1.172388e-01	ci left: 8.151182e-04	ci right 9.173768e-04	k: 1116	n:1290000
GALNT2   1290000 perm   990 sec   (1303 perm/sec)   p_kst 8.651163e-04   p_cons 3.943333e-02   p_joint 8.651163e-04

Joint ci ratio: 1.168732e-01	ci left: 8.140750e-04	ci right 9.158623e-04	k: 1123	n:1300000
Cons ci ratio: 1.696625e-02	ci left: 3.910912e-02	ci right 3.977909e-02	k: 51276	n:1300000
KS ci ratio: 1.168732e-01	ci left: 8.140750e-04	ci right 9.158623e-04	k: 1123	n:1300000
GALNT2   1300000 perm   1003 sec   (1296 perm/sec)   p_kst 8.638462e-04   p_cons 3.944308e-02   p_joint 8.638462e-04

Joint ci ratio: 1.165626e-01	ci left: 8.123070e-04	ci right 9.135848e-04	k: 1129	n:1310000
Cons ci ratio: 1.689039e-02	ci left: 3.915948e-02	ci right 3.982729e-02	k: 51735	n:1310000
KS ci ratio: 1.165626e-01	ci left: 8.123070e-04	ci right 9.135848e-04	k: 1129	n:1310000
GALNT2   1310000 perm   1016 sec   (1289 perm/sec)   p_kst 8.618321e-04   p_cons 3.949237e-02   p_joint 8.618321e-04

Joint ci ratio: 1.159484e-01	ci left: 8.149798e-04	ci right 9.160188e-04	k: 1141	n:1320000
Cons ci ratio: 1.681822e-02	ci left: 3.919702e-02	ci right 3.986258e-02	k: 52178	n:1320000
KS ci ratio: 1.159484e-01	ci left: 8.149798e-04	ci right 9.160188e-04	k: 1141	n:1320000
GALNT2   1320000 perm   1030 sec   (1281 perm/sec)   p_kst 8.643939e-04   p_cons 3.952879e-02   p_joint 8.643939e-04

Joint ci ratio: 1.156452e-01	ci left: 8.132327e-04	ci right 9.137734e-04	k: 1147	n:1330000
Cons ci ratio: 1.675194e-02	ci left: 3.921153e-02	ci right 3.987469e-02	k: 52591	n:1330000
KS ci ratio: 1.156452e-01	ci left: 8.132327e-04	ci right 9.137734e-04	k: 1147	n:1330000
GALNT2   1330000 perm   1044 sec   (1274 perm/sec)   p_kst 8.624060e-04   p_cons 3.954211e-02   p_joint 8.624060e-04

Joint ci ratio: 1.152943e-01	ci left: 8.122368e-04	ci right 9.123289e-04	k: 1154	n:1340000
Cons ci ratio: 1.668791e-02	ci left: 3.921914e-02	ci right 3.987987e-02	k: 52995	n:1340000
KS ci ratio: 1.152943e-01	ci left: 8.122368e-04	ci right 9.123289e-04	k: 1154	n:1340000
GALNT2   1340000 perm   1058 sec   (1267 perm/sec)   p_kst 8.611940e-04   p_cons 3.954851e-02   p_joint 8.611940e-04

Joint ci ratio: 1.147983e-01	ci left: 8.134145e-04	ci right 9.131913e-04	k: 1164	n:1350000
Cons ci ratio: 1.662412e-02	ci left: 3.922886e-02	ci right 3.988719e-02	k: 53402	n:1350000
KS ci ratio: 1.147983e-01	ci left: 8.134145e-04	ci right 9.131913e-04	k: 1164	n:1350000
GALNT2   1350000 perm   1071 sec   (1260 perm/sec)   p_kst 8.622222e-04   p_cons 3.955704e-02   p_joint 8.622222e-04

Joint ci ratio: 1.144550e-01	ci left: 8.124330e-04	ci right 9.117713e-04	k: 1171	n:1360000
Cons ci ratio: 1.656314e-02	ci left: 3.922891e-02	ci right 3.988481e-02	k: 53796	n:1360000
KS ci ratio: 1.144550e-01	ci left: 8.124330e-04	ci right 9.117713e-04	k: 1171	n:1360000
GALNT2   1360000 perm   1085 sec   (1253 perm/sec)   p_kst 8.610294e-04   p_cons 3.955588e-02   p_joint 8.610294e-04

Joint ci ratio: 1.141148e-01	ci left: 8.114662e-04	ci right 9.103715e-04	k: 1178	n:1370000
Cons ci ratio: 1.650505e-02	ci left: 3.921879e-02	ci right 3.987220e-02	k: 54176	n:1370000
KS ci ratio: 1.141148e-01	ci left: 8.114662e-04	ci right 9.103715e-04	k: 1178	n:1370000
GALNT2   1370000 perm   1099 sec   (1247 perm/sec)   p_kst 8.598540e-04   p_cons 3.954453e-02   p_joint 8.598540e-04

Joint ci ratio: 1.137776e-01	ci left: 8.105139e-04	ci right 9.089916e-04	k: 1185	n:1380000
Cons ci ratio: 1.644521e-02	ci left: 3.921965e-02	ci right 3.987069e-02	k: 54571	n:1380000
KS ci ratio: 1.137776e-01	ci left: 8.105139e-04	ci right 9.089916e-04	k: 1185	n:1380000
GALNT2   1380000 perm   1113 sec   (1240 perm/sec)   p_kst 8.586957e-04   p_cons 3.954420e-02   p_joint 8.586957e-04

Joint ci ratio: 1.133009e-01	ci left: 8.116728e-04	ci right 9.098506e-04	k: 1195	n:1390000
Cons ci ratio: 1.638059e-02	ci left: 3.924559e-02	ci right 3.989446e-02	k: 55001	n:1390000
KS ci ratio: 1.133009e-01	ci left: 8.116728e-04	ci right 9.098506e-04	k: 1195	n:1390000
GALNT2   1390000 perm   1127 sec   (1234 perm/sec)   p_kst 8.597122e-04   p_cons 3.956906e-02   p_joint 8.597122e-04

Joint ci ratio: 1.127833e-01	ci left: 8.135102e-04	ci right 9.114308e-04	k: 1206	n:1400000
Cons ci ratio: 1.632240e-02	ci left: 3.924483e-02	ci right 3.989137e-02	k: 55394	n:1400000
KS ci ratio: 1.127833e-01	ci left: 8.135102e-04	ci right 9.114308e-04	k: 1206	n:1400000
GALNT2   1400000 perm   1141 sec   (1227 perm/sec)   p_kst 8.614286e-04   p_cons 3.956714e-02   p_joint 8.614286e-04

Joint ci ratio: 1.124115e-01	ci left: 8.132546e-04	ci right 9.108002e-04	k: 1214	n:1410000
Cons ci ratio: 1.626300e-02	ci left: 3.925256e-02	ci right 3.989685e-02	k: 55799	n:1410000
KS ci ratio: 1.124115e-01	ci left: 8.132546e-04	ci right 9.108002e-04	k: 1214	n:1410000
GALNT2   1410000 perm   1156 sec   (1220 perm/sec)   p_kst 8.609929e-04   p_cons 3.957376e-02   p_joint 8.609929e-04

Joint ci ratio: 1.120432e-01	ci left: 8.130031e-04	ci right 9.101780e-04	k: 1222	n:1420000
Cons ci ratio: 1.620860e-02	ci left: 3.923984e-02	ci right 3.988175e-02	k: 56175	n:1420000
KS ci ratio: 1.120432e-01	ci left: 8.130031e-04	ci right 9.101780e-04	k: 1222	n:1420000
GALNT2   1420000 perm   1171 sec   (1213 perm/sec)   p_kst 8.605634e-04   p_cons 3.955986e-02   p_joint 8.605634e-04

Joint ci ratio: 1.114523e-01	ci left: 8.161546e-04	ci right 9.131580e-04	k: 1235	n:1430000
Cons ci ratio: 1.614820e-02	ci left: 3.925796e-02	ci right 3.989775e-02	k: 56595	n:1430000
KS ci ratio: 1.114523e-01	ci left: 8.161546e-04	ci right 9.131580e-04	k: 1235	n:1430000
GALNT2   1430000 perm   1185 sec   (1207 perm/sec)   p_kst 8.636364e-04   p_cons 3.957692e-02   p_joint 8.636364e-04

Joint ci ratio: 1.110933e-01	ci left: 8.158878e-04	ci right 9.125267e-04	k: 1243	n:1440000
Cons ci ratio: 1.609494e-02	ci left: 3.924539e-02	ci right 3.988285e-02	k: 56971	n:1440000
KS ci ratio: 1.110933e-01	ci left: 8.158878e-04	ci right 9.125267e-04	k: 1243	n:1440000
GALNT2   1440000 perm   1200 sec   (1200 perm/sec)   p_kst 8.631944e-04   p_cons 3.956319e-02   p_joint 8.631944e-04

Joint ci ratio: 1.108265e-01	ci left: 8.142841e-04	ci right 9.104862e-04	k: 1249	n:1450000
Cons ci ratio: 1.603580e-02	ci left: 3.926323e-02	ci right 3.989861e-02	k: 57391	n:1450000
KS ci ratio: 1.108265e-01	ci left: 8.142841e-04	ci right 9.104862e-04	k: 1249	n:1450000
GALNT2   1450000 perm   1214 sec   (1194 perm/sec)   p_kst 8.613793e-04   p_cons 3.958000e-02   p_joint 8.613793e-04

Joint ci ratio: 1.104297e-01	ci left: 8.147006e-04	ci right 9.105849e-04	k: 1258	n:1460000
Cons ci ratio: 1.597558e-02	ci left: 3.928901e-02	ci right 3.992240e-02	k: 57823	n:1460000
KS ci ratio: 1.104297e-01	ci left: 8.147006e-04	ci right 9.105849e-04	k: 1258	n:1460000
GALNT2   1460000 perm   1229 sec   (1188 perm/sec)   p_kst 8.616438e-04   p_cons 3.960479e-02   p_joint 8.616438e-04

Joint ci ratio: 1.099070e-01	ci left: 8.170968e-04	ci right 9.127785e-04	k: 1270	n:1470000
Cons ci ratio: 1.592187e-02	ci left: 3.928667e-02	ci right 3.991787e-02	k: 58214	n:1470000
KS ci ratio: 1.099070e-01	ci left: 8.170968e-04	ci right 9.127785e-04	k: 1270	n:1470000
GALNT2   1470000 perm   1244 sec   (1182 perm/sec)   p_kst 8.639456e-04   p_cons 3.960136e-02   p_joint 8.639456e-04

Joint ci ratio: 1.095627e-01	ci left: 8.168329e-04	ci right 9.121648e-04	k: 1278	n:1480000
Cons ci ratio: 1.586658e-02	ci left: 3.929445e-02	ci right 3.992357e-02	k: 58620	n:1480000
KS ci ratio: 1.095627e-01	ci left: 8.168329e-04	ci right 9.121648e-04	k: 1278	n:1480000
GALNT2   1480000 perm   1259 sec   (1176 perm/sec)   p_kst 8.635135e-04   p_cons 3.960811e-02   p_joint 8.635135e-04

Joint ci ratio: 1.091793e-01	ci left: 8.172259e-04	ci right 9.122483e-04	k: 1287	n:1490000
Cons ci ratio: 1.581061e-02	ci left: 3.930815e-02	ci right 3.993525e-02	k: 59035	n:1490000
KS ci ratio: 1.091793e-01	ci left: 8.172259e-04	ci right 9.122483e-04	k: 1287	n:1490000
GALNT2   1490000 perm   1273 sec   (1170 perm/sec)   p_kst 8.637584e-04   p_cons 3.962081e-02   p_joint 8.637584e-04

Joint ci ratio: 1.086741e-01	ci left: 8.195598e-04	ci right 9.143844e-04	k: 1299	n:1500000
Cons ci ratio: 1.575758e-02	ci left: 3.931039e-02	ci right 3.993539e-02	k: 59433	n:1500000
KS ci ratio: 1.086741e-01	ci left: 8.195598e-04	ci right 9.143844e-04	k: 1299	n:1500000
GALNT2   1500000 perm   1289 sec   (1164 perm/sec)   p_kst 8.660000e-04   p_cons 3.962200e-02   p_joint 8.660000e-04

Joint ci ratio: 1.082171e-01	ci left: 8.212195e-04	ci right 9.158111e-04	k: 1310	n:1510000
Cons ci ratio: 1.570343e-02	ci left: 3.932051e-02	ci right 3.994351e-02	k: 59843	n:1510000
KS ci ratio: 1.082171e-01	ci left: 8.212195e-04	ci right 9.158111e-04	k: 1310	n:1510000
GALNT2   1510000 perm   1304 sec   (1158 perm/sec)   p_kst 8.675497e-04   p_cons 3.963113e-02   p_joint 8.675497e-04

Joint ci ratio: 1.076437e-01	ci left: 8.247787e-04	ci right 9.192450e-04	k: 1324	n:1520000
Cons ci ratio: 1.565525e-02	ci left: 3.930429e-02	ci right 3.992510e-02	k: 60213	n:1520000
KS ci ratio: 1.076437e-01	ci left: 8.247787e-04	ci right 9.192450e-04	k: 1324	n:1520000
GALNT2   1520000 perm   1320 sec   (1152 perm/sec)   p_kst 8.710526e-04   p_cons 3.961382e-02   p_joint 8.710526e-04

Joint ci ratio: 1.071594e-01	ci left: 8.270205e-04	ci right 9.212906e-04	k: 1336	n:1530000
Cons ci ratio: 1.560175e-02	ci left: 3.931628e-02	ci right 3.993514e-02	k: 60626	n:1530000
KS ci ratio: 1.071594e-01	ci left: 8.270205e-04	ci right 9.212906e-04	k: 1336	n:1530000
GALNT2   1530000 perm   1336 sec   (1146 perm/sec)   p_kst 8.732026e-04   p_cons 3.962484e-02   p_joint 8.732026e-04

Joint ci ratio: 1.067212e-01	ci left: 8.286021e-04	ci right 9.226420e-04	k: 1347	n:1540000
Cons ci ratio: 1.555171e-02	ci left: 3.931388e-02	ci right 3.993071e-02	k: 61017	n:1540000
KS ci ratio: 1.067212e-01	ci left: 8.286021e-04	ci right 9.226420e-04	k: 1347	n:1540000
GALNT2   1540000 perm   1351 sec   (1140 perm/sec)   p_kst 8.746753e-04   p_cons 3.962143e-02   p_joint 8.746753e-04

Joint ci ratio: 1.063667e-01	ci left: 8.289080e-04	ci right 9.226506e-04	k: 1356	n:1550000
Cons ci ratio: 1.550477e-02	ci left: 3.929867e-02	ci right 3.991338e-02	k: 61388	n:1550000
KS ci ratio: 1.063667e-01	ci left: 8.289080e-04	ci right 9.226506e-04	k: 1356	n:1550000
GALNT2   1550000 perm   1367 sec   (1134 perm/sec)   p_kst 8.748387e-04   p_cons 3.960516e-02   p_joint 8.748387e-04

Joint ci ratio: 1.059381e-01	ci left: 8.304586e-04	ci right 9.239745e-04	k: 1367	n:1560000
Cons ci ratio: 1.545735e-02	ci left: 3.928812e-02	ci right 3.990077e-02	k: 61766	n:1560000
KS ci ratio: 1.059381e-01	ci left: 8.304586e-04	ci right 9.239745e-04	k: 1367	n:1560000
GALNT2   1560000 perm   1383 sec   (1128 perm/sec)   p_kst 8.762821e-04   p_cons 3.959359e-02   p_joint 8.762821e-04

Joint ci ratio: 1.053619e-01	ci left: 8.344708e-04	ci right 9.278957e-04	k: 1382	n:1570000
Cons ci ratio: 1.541204e-02	ci left: 3.926946e-02	ci right 3.988001e-02	k: 62131	n:1570000
KS ci ratio: 1.053619e-01	ci left: 8.344708e-04	ci right 9.278957e-04	k: 1382	n:1570000
GALNT2   1570000 perm   1399 sec   (1122 perm/sec)   p_kst 8.802548e-04   p_cons 3.957389e-02   p_joint 8.802548e-04

Joint ci ratio: 1.051342e-01	ci left: 8.328868e-04	ci right 9.259204e-04	k: 1388	n:1580000
Cons ci ratio: 1.536277e-02	ci left: 3.927248e-02	ci right 3.988111e-02	k: 62530	n:1580000
KS ci ratio: 1.051342e-01	ci left: 8.328868e-04	ci right 9.259204e-04	k: 1388	n:1580000
GALNT2   1580000 perm   1414 sec   (1117 perm/sec)   p_kst 8.784810e-04   p_cons 3.957595e-02   p_joint 8.784810e-04

Joint ci ratio: 1.048327e-01	ci left: 8.325479e-04	ci right 9.252605e-04	k: 1396	n:1590000
Cons ci ratio: 1.531347e-02	ci left: 3.927797e-02	ci right 3.988471e-02	k: 62933	n:1590000
KS ci ratio: 1.048327e-01	ci left: 8.325479e-04	ci right 9.252605e-04	k: 1396	n:1590000
GALNT2   1590000 perm   1430 sec   (1112 perm/sec)   p_kst 8.779874e-04   p_cons 3.958050e-02   p_joint 8.779874e-04

Joint ci ratio: 1.046457e-01	ci left: 8.303875e-04	ci right 9.226845e-04	k: 1401	n:1600000
Cons ci ratio: 1.526878e-02	ci left: 3.926285e-02	ci right 3.986757e-02	k: 63303	n:1600000
KS ci ratio: 1.046457e-01	ci left: 8.303875e-04	ci right 9.226845e-04	k: 1401	n:1600000
GALNT2   1600000 perm   1446 sec   (1106 perm/sec)   p_kst 8.756250e-04   p_cons 3.956437e-02   p_joint 8.756250e-04

Joint ci ratio: 1.043855e-01	ci left: 8.294640e-04	ci right 9.214150e-04	k: 1408	n:1610000
Cons ci ratio: 1.522187e-02	ci left: 3.926091e-02	ci right 3.986373e-02	k: 63694	n:1610000
KS ci ratio: 1.043855e-01	ci left: 8.294640e-04	ci right 9.214150e-04	k: 1408	n:1610000
GALNT2   1610000 perm   1463 sec   (1101 perm/sec)   p_kst 8.745342e-04   p_cons 3.956149e-02   p_joint 8.745342e-04

Joint ci ratio: 1.037976e-01	ci left: 8.339634e-04	ci right 9.258607e-04	k: 1424	n:1620000
Cons ci ratio: 1.517748e-02	ci left: 3.924855e-02	ci right 3.984940e-02	k: 64068	n:1620000
KS ci ratio: 1.037976e-01	ci left: 8.339634e-04	ci right 9.258607e-04	k: 1424	n:1620000
GALNT2   1620000 perm   1479 sec   (1095 perm/sec)   p_kst 8.790123e-04   p_cons 3.954815e-02   p_joint 8.790123e-04

Joint ci ratio: 1.035075e-01	ci left: 8.336278e-04	ci right 9.252158e-04	k: 1432	n:1630000
Cons ci ratio: 1.512883e-02	ci left: 3.925956e-02	ci right 3.985864e-02	k: 64480	n:1630000
KS ci ratio: 1.035075e-01	ci left: 8.336278e-04	ci right 9.252158e-04	k: 1432	n:1630000
GALNT2   1630000 perm   1496 sec   (1090 perm/sec)   p_kst 8.785276e-04   p_cons 3.955828e-02   p_joint 8.785276e-04

Joint ci ratio: 1.031482e-01	ci left: 8.344847e-04	ci right 9.258293e-04	k: 1442	n:1640000
Cons ci ratio: 1.508210e-02	ci left: 3.926316e-02	ci right 3.986042e-02	k: 64880	n:1640000
KS ci ratio: 1.031482e-01	ci left: 8.344847e-04	ci right 9.258293e-04	k: 1442	n:1640000
GALNT2   1640000 perm   1512 sec   (1085 perm/sec)   p_kst 8.792683e-04   p_cons 3.956098e-02   p_joint 8.792683e-04

Joint ci ratio: 1.028635e-01	ci left: 8.341507e-04	ci right 9.251916e-04	k: 1450	n:1650000
Cons ci ratio: 1.504024e-02	ci left: 3.924437e-02	ci right 3.983968e-02	k: 65243	n:1650000
KS ci ratio: 1.028635e-01	ci left: 8.341507e-04	ci right 9.251916e-04	k: 1450	n:1650000
GALNT2   1650000 perm   1528 sec   (1080 perm/sec)   p_kst 8.787879e-04   p_cons 3.954121e-02   p_joint 8.787879e-04

Joint ci ratio: 1.026515e-01	ci left: 8.326473e-04	ci right 9.233255e-04	k: 1456	n:1660000
Cons ci ratio: 1.498993e-02	ci left: 3.927022e-02	ci right 3.986392e-02	k: 65680	n:1660000
KS ci ratio: 1.026515e-01	ci left: 8.326473e-04	ci right 9.233255e-04	k: 1456	n:1660000
GALNT2   1660000 perm   1546 sec   (1074 perm/sec)   p_kst 8.771084e-04   p_cons 3.956627e-02   p_joint 8.771084e-04

Joint ci ratio: 1.023360e-01	ci left: 8.329124e-04	ci right 9.233239e-04	k: 1465	n:1670000
Cons ci ratio: 1.494341e-02	ci left: 3.927907e-02	ci right 3.987103e-02	k: 66089	n:1670000
KS ci ratio: 1.023360e-01	ci left: 8.329124e-04	ci right 9.233239e-04	k: 1465	n:1670000
GALNT2   1670000 perm   1563 sec   (1069 perm/sec)   p_kst 8.772455e-04   p_cons 3.957425e-02   p_joint 8.772455e-04

Joint ci ratio: 1.020233e-01	ci left: 8.331749e-04	ci right 9.233219e-04	k: 1474	n:1680000
Cons ci ratio: 1.489814e-02	ci left: 3.928366e-02	ci right 3.987388e-02	k: 66491	n:1680000
KS ci ratio: 1.020233e-01	ci left: 8.331749e-04	ci right 9.233219e-04	k: 1474	n:1680000
GALNT2   1680000 perm   1580 sec   (1063 perm/sec)   p_kst 8.773810e-04   p_cons 3.957798e-02   p_joint 8.773810e-04

Joint ci ratio: 1.017477e-01	ci left: 8.328580e-04	ci right 9.227128e-04	k: 1482	n:1690000
Cons ci ratio: 1.485745e-02	ci left: 3.926697e-02	ci right 3.985532e-02	k: 66857	n:1690000
KS ci ratio: 1.017477e-01	ci left: 8.328580e-04	ci right 9.227128e-04	k: 1482	n:1690000
GALNT2   1690000 perm   1597 sec   (1058 perm/sec)   p_kst 8.769231e-04   p_cons 3.956036e-02   p_joint 8.769231e-04

Joint ci ratio: 1.013724e-01	ci left: 8.342651e-04	ci right 9.239199e-04	k: 1493	n:1700000
Cons ci ratio: 1.481387e-02	ci left: 3.926689e-02	ci right 3.985350e-02	k: 67251	n:1700000
KS ci ratio: 1.013724e-01	ci left: 8.342651e-04	ci right 9.239199e-04	k: 1493	n:1700000
GALNT2   1700000 perm   1614 sec   (1053 perm/sec)   p_kst 8.782353e-04   p_cons 3.955941e-02   p_joint 8.782353e-04

Joint ci ratio: 1.009006e-01	ci left: 8.373664e-04	ci right 9.269110e-04	k: 1507	n:1710000
Cons ci ratio: 1.477056e-02	ci left: 3.926740e-02	ci right 3.985229e-02	k: 67646	n:1710000
KS ci ratio: 1.009006e-01	ci left: 8.373664e-04	ci right 9.269110e-04	k: 1507	n:1710000
GALNT2   1710000 perm   1631 sec   (1048 perm/sec)   p_kst 8.812865e-04   p_cons 3.955906e-02   p_joint 8.812865e-04

Joint ci ratio: 1.007338e-01	ci left: 8.353317e-04	ci right 9.245022e-04	k: 1512	n:1720000
Cons ci ratio: 1.472684e-02	ci left: 3.927196e-02	ci right 3.985517e-02	k: 68048	n:1720000
KS ci ratio: 1.007338e-01	ci left: 8.353317e-04	ci right 9.245022e-04	k: 1512	n:1720000
GALNT2   1720000 perm   1648 sec   (1044 perm/sec)   p_kst 8.790698e-04   p_cons 3.956279e-02   p_joint 8.790698e-04

Joint ci ratio: 1.005017e-01	ci left: 8.344475e-04	ci right 9.233063e-04	k: 1519	n:1730000
Cons ci ratio: 1.468138e-02	ci left: 3.928742e-02	ci right 3.986904e-02	k: 68469	n:1730000
KS ci ratio: 1.005017e-01	ci left: 8.344475e-04	ci right 9.233063e-04	k: 1519	n:1730000
GALNT2   1730000 perm   1665 sec   (1039 perm/sec)   p_kst 8.780347e-04   p_cons 3.957746e-02   p_joint 8.780347e-04

Joint ci ratio: 1.001399e-01	ci left: 8.358151e-04	ci right 9.244804e-04	k: 1530	n:1740000
Cons ci ratio: 1.464232e-02	ci left: 3.927177e-02	ci right 3.985160e-02	k: 68836	n:1740000
KS ci ratio: 1.001399e-01	ci left: 8.358151e-04	ci right 9.244804e-04	k: 1530	n:1740000
GALNT2   1740000 perm   1682 sec   (1034 perm/sec)   p_kst 8.793103e-04   p_cons 3.956092e-02   p_joint 8.793103e-04

Joint ci ratio: 1.000095e-01	ci left: 8.332675e-04	ci right 9.215406e-04	k: 1534	n:1750000
Cons ci ratio: 1.459950e-02	ci left: 3.927737e-02	ci right 3.985558e-02	k: 69240	n:1750000
KS ci ratio: 1.000095e-01	ci left: 8.332675e-04	ci right 9.215406e-04	k: 1534	n:1750000
GALNT2   1750000 perm   1700 sec   (1030 perm/sec)   p_kst 8.765714e-04   p_cons 3.956571e-02   p_joint 8.765714e-04

Joint ci ratio: 9.987957e-02	ci left: 8.307489e-04	ci right 9.186341e-04	k: 1538	n:1760000
Cons ci ratio: 1.455738e-02	ci left: 3.928122e-02	ci right 3.985780e-02	k: 69641	n:1760000
KS ci ratio: 9.987957e-02	ci left: 8.307489e-04	ci right 9.186341e-04	k: 1538	n:1760000
GALNT2   1760000 perm   1718 sec   (1025 perm/sec)   p_kst 8.738636e-04   p_cons 3.956875e-02   p_joint 8.738636e-04

Outputting figure to mutsig2_images.part000000000068/GALNT2.2_1780_1760000_0.00087386_0.039569_0.00087386.png
                gene_name: GALNT2
               theta_stop: 0.100 
                    nperm: 1760000 
                     p_ks: 0.00087 
        ci_ks_bounds_left: 0.00083 
       ci_ks_bounds_right: 0.00092 
                   p_cons: 0.040 
      ci_cons_bounds_left: 0.039 
     ci_cons_bounds_right: 0.040 
                  p_joint: 0.00087 
     ci_joint_bounds_left: 0.00083 
    ci_joint_bounds_right: 0.00092 

Current progress: 97 percent done.
GALNT6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.459001e-02	ci left: 7.086644e-01	ci right 7.264087e-01	k: 7176	n:10000
KS ci ratio: 1.743342e-02	ci left: 8.274759e-01	ci right 8.421285e-01	k: 8349	n:10000
GALNT6   10000 perm   2 sec   (5887 perm/sec)   p_kst 8.349000e-01   p_cons 7.176000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000068/GALNT6.2_1909_10000_0.8349_0.7176_1.png
                gene_name: GALNT6
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
GALP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.712419e-02	ci left: 6.669285e-01	ci right 6.853688e-01	k: 6762	n:10000
Cons ci ratio: 5.330361e-02	ci left: 3.415406e-01	ci right 3.603463e-01	k: 3509	n:10000
KS ci ratio: 1.194462e-02	ci left: 9.094652e-01	ci right 9.204916e-01	k: 9151	n:10000
GALP   10000 perm   1 sec   (7042 perm/sec)   p_kst 9.151000e-01   p_cons 3.509000e-01   p_joint 6.762000e-01

Outputting figure to mutsig2_images.part000000000068/GALP.2_371_10000_0.9151_0.3509_0.6762.png
                gene_name: GALP
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000068
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 68 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1548>
Subject: Job 8004097: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1548>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000069> was used as the working directory.
Started at Sun Nov 11 17:30:13 2012
Results reported at Sun Nov 11 20:58:46 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000069.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000069.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 69  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000069.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  22711.01 sec.
    Max Memory :      4930 MB
    Max Swap   :      7314 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
69
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 69
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 69: processing genes 6153 - 6242
Calculating significance of each gene.
Using projection method.
6153	GALR2	1
6154	GALR3	1
6155	GALT	7.388313e-01
6156	GAMT	1
6157	GAN	8.691790e-01
6158	GANAB	4.619224e-01
6159	GANC	3.991710e-01
6160	GAP43	5.688378e-04
6161	GAPDH	3.973919e-01
6162	GAPDHS	6.483128e-01
6163	GAPT	5.039210e-01
6164	GAPVD1	9.943092e-01
6165	GAR1	4.298439e-01
6166	GARNL3	3.078570e-01
6167	GARS	1
6168	GART	8.084881e-01
6169	GAS1	1
6170	GAS2	2.548267e-01
6171	GAS2L1	1
6172	GAS2L2	7.084845e-01
6173	GAS2L3	8.295102e-01
6174	GAS6	7.699391e-01
6175	GAS7	1.969270e-01
6176	GAS8	4.682929e-01
6177	GAST	1
6178	GATA1	1.984652e-01
6179	GATA2	1
6180	GATA3	6.464774e-03
6181	GATA4	1
6182	GATA5	1
6183	GATA6	4.060842e-01
6184	GATAD1	1
6185	GATAD2A	1
6186	GATAD2B	8.705321e-01
6187	GATC	1
6188	GATM	6.739610e-01
6189	GATS	4.079507e-01
6190	GATSL3	1
6191	GBA	1.582200e-01
6192	GBA2	1
6193	GBA3	5.449299e-05
6194	GBAS	5.213108e-01
6195	GBE1	7.204728e-01
6196	GBF1	9.693575e-01
6197	GBGT1	2.625736e-01
6198	GBP1	8.529286e-01
6199	GBP2	2.992318e-01
6200	GBP3	1
6201	GBP4	1.085924e-01
6202	GBP5	9.191077e-01
6203	GBP6	7.202344e-01
6204	GBP7	1
6205	GBX1	3.018187e-02
6206	GBX2	1
6207	GC	3.871315e-02
6208	GCA	2.118818e-01
6209	GCAT	7.374302e-01
6210	GCC1	1
6211	GCC2	9.555848e-01
6212	GCDH	4.071739e-01
6213	GCET2	4.213731e-02
6214	GCFC1	9.392677e-01
6215	GCG	3.755392e-02
6216	GCH1	6.388209e-01
6217	GCHFR	1
6218	GCK	6.994092e-01
6219	GCKR	3.161417e-01
6220	GCLC	6.993988e-01
6221	GCLM	6.086605e-01
6222	GCM1	2.267202e-01
6223	GCM2	1
6224	GCN1L1	9.832418e-01
6225	GCNT1	2.524260e-01
6226	GCNT2	9.294447e-01
6227	GCNT3	1
6228	GCNT4	1
6229	GCOM1	8.207675e-01
6230	GCSH	4.176133e-01
6231	GDA	7.207511e-02
6232	GDAP1	3.220604e-01
6233	GDAP1L1	7.473371e-02
6234	GDAP2	7.624635e-01
6235	GDE1	1.173262e-01
6236	GDF10	1.603964e-02
6237	GDF11	1
6238	GDF15	2.392354e-01
6239	GDF2	5.502830e-02
6240	GDF3	6.564947e-02
6241	GDF5	2.164221e-01
6242	GDF6	3.378539e-01
Done

Running MutSig 2:
Scatter job 69: processing genes 6153 - 6242
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
GBA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.716131e-02	ci left: 3.988435e-01	ci right 4.182098e-01	k: 4085	n:10000
Cons ci ratio: 1.950272e-02	ci left: 7.936464e-01	ci right 8.093775e-01	k: 8016	n:10000
KS ci ratio: 6.421114e-02	ci left: 2.627020e-01	ci right 2.802313e-01	k: 2714	n:10000
GBA3   10000 perm   2 sec   (4427 perm/sec)   p_kst 2.714000e-01   p_cons 8.016000e-01   p_joint 4.085000e-01

Outputting figure to mutsig2_images.part000000000069/GBA3.11_1430_10000_0.2714_0.8016_0.4085.png
                gene_name: GBA3
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 2 percent done.
GCC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.411193e-02	ci left: 2.104338e-01	ci right 2.267305e-01	k: 2185	n:10000
Cons ci ratio: 7.714643e-02	ci left: 1.972229e-01	ci right 2.131492e-01	k: 2051	n:10000
KS ci ratio: 5.637744e-02	ci left: 3.166160e-01	ci right 3.350856e-01	k: 3258	n:10000
GCC2   10000 perm   3 sec   (3958 perm/sec)   p_kst 3.258000e-01   p_cons 2.051000e-01   p_joint 2.185000e-01

Outputting figure to mutsig2_images.part000000000069/GCC2.8_5147_10000_0.3258_0.2051_0.2185.png
                gene_name: GCC2
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 4 percent done.
GCM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.763252e-02	ci left: 3.070909e-01	ci right 3.254162e-01	k: 3162	n:10000
Cons ci ratio: 6.301137e-03	ci left: 9.716422e-01	ci right 9.778770e-01	k: 9749	n:10000
KS ci ratio: 9.755860e-02	ci left: 1.321775e-01	ci right 1.458335e-01	k: 1389	n:10000
GCM1   10000 perm   2 sec   (5834 perm/sec)   p_kst 1.389000e-01   p_cons 9.749000e-01   p_joint 3.162000e-01

Outputting figure to mutsig2_images.part000000000069/GCM1.8_1331_10000_0.1389_0.9749_0.3162.png
                gene_name: GCM1
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 6 percent done.
GCN1L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.079455e-02	ci left: 7.721552e-01	ci right 7.884812e-01	k: 7804	n:10000
KS ci ratio: 6.364973e-03	ci left: 9.711128e-01	ci right 9.774068e-01	k: 9744	n:10000
GCN1L1   10000 perm   3 sec   (3202 perm/sec)   p_kst 9.744000e-01   p_cons 7.804000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000069/GCN1L1.8_8248_10000_0.9744_0.7804_1.png
                gene_name: GCN1L1
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 8 percent done.
GAP43
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.774266e-02	ci left: 1.947597e-01	ci right 2.106139e-01	k: 2026	n:10000
Cons ci ratio: 9.631476e-02	ci left: 1.352137e-01	ci right 1.489955e-01	k: 1420	n:10000
KS ci ratio: 7.519138e-02	ci left: 2.056014e-01	ci right 2.217657e-01	k: 2136	n:10000
GAP43   10000 perm   2 sec   (6089 perm/sec)   p_kst 2.136000e-01   p_cons 1.420000e-01   p_joint 2.026000e-01

Outputting figure to mutsig2_images.part000000000069/GAP43.7_871_10000_0.2136_0.142_0.2026.png
                gene_name: GAP43
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 10 percent done.
GAS7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.614451e-02	ci left: 6.829473e-01	ci right 7.011407e-01	k: 6921	n:10000
Cons ci ratio: 2.268605e-02	ci left: 7.404812e-01	ci right 7.575735e-01	k: 7491	n:10000
KS ci ratio: 4.377012e-02	ci left: 4.352269e-01	ci right 4.548052e-01	k: 4450	n:10000
GAS7   10000 perm   2 sec   (5222 perm/sec)   p_kst 4.450000e-01   p_cons 7.491000e-01   p_joint 6.921000e-01

Outputting figure to mutsig2_images.part000000000069/GAS7.7_1545_10000_0.445_0.7491_0.6921.png
                gene_name: GAS7
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 12 percent done.
GDA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.626371e-01	ci left: 5.041952e-02	ci right 5.944196e-02	k: 548	n:10000
Cons ci ratio: 4.737663e-02	ci left: 3.966523e-01	ci right 4.160023e-01	k: 4063	n:10000
KS ci ratio: 2.779532e-01	ci left: 1.678737e-02	ci right 2.229755e-02	k: 194	n:10000
GDA   10000 perm   2 sec   (5269 perm/sec)   p_kst 1.940000e-02   p_cons 4.063000e-01   p_joint 5.480000e-02

Joint ci ratio: 1.273938e-01	ci left: 4.231371e-02	ci right 4.811944e-02	k: 903	n:20000
Cons ci ratio: 3.307332e-02	ci left: 4.057154e-01	ci right 4.194100e-01	k: 8251	n:20000
KS ci ratio: 2.117242e-01	ci left: 1.506432e-02	ci right 1.867810e-02	k: 336	n:20000
GDA   20000 perm   4 sec   (4675 perm/sec)   p_kst 1.680000e-02   p_cons 4.125500e-01   p_joint 4.515000e-02

Joint ci ratio: 1.228321e-01	ci left: 3.081318e-02	ci right 3.487795e-02	k: 984	n:30000
Cons ci ratio: 2.702460e-02	ci left: 4.066220e-01	ci right 4.177950e-01	k: 12366	n:30000
KS ci ratio: 1.689227e-01	ci left: 1.614224e-02	ci right 1.915221e-02	k: 528	n:30000
GDA   30000 perm   7 sec   (4468 perm/sec)   p_kst 1.760000e-02   p_cons 4.122000e-01   p_joint 3.280000e-02

Joint ci ratio: 1.123204e-01	ci left: 2.788788e-02	ci right 3.123088e-02	k: 1181	n:40000
Cons ci ratio: 2.435114e-02	ci left: 3.883337e-01	ci right 3.979318e-01	k: 15725	n:40000
KS ci ratio: 1.429581e-01	ci left: 1.712964e-02	ci right 1.979092e-02	k: 737	n:40000
GDA   40000 perm   9 sec   (4329 perm/sec)   p_kst 1.842500e-02   p_cons 3.931250e-01   p_joint 2.952500e-02

Joint ci ratio: 1.000275e-01	ci left: 2.830744e-02	ci right 3.130748e-02	k: 1489	n:50000
Cons ci ratio: 2.177346e-02	ci left: 3.889947e-01	ci right 3.975777e-01	k: 19664	n:50000
KS ci ratio: 1.283273e-01	ci left: 1.714319e-02	ci right 1.951320e-02	k: 915	n:50000
GDA   50000 perm   12 sec   (4200 perm/sec)   p_kst 1.830000e-02   p_cons 3.932800e-01   p_joint 2.978000e-02

Joint ci ratio: 9.507796e-02	ci left: 2.623859e-02	ci right 2.887404e-02	k: 1652	n:60000
Cons ci ratio: 1.903645e-02	ci left: 4.101213e-01	ci right 4.180203e-01	k: 24844	n:60000
KS ci ratio: 1.164043e-01	ci left: 1.746917e-02	ci right 1.964442e-02	k: 1112	n:60000
GDA   60000 perm   15 sec   (4112 perm/sec)   p_kst 1.853333e-02   p_cons 4.140667e-01   p_joint 2.753333e-02

Joint ci ratio: 8.666000e-02	ci left: 2.716789e-02	ci right 2.964283e-02	k: 1987	n:70000
Cons ci ratio: 1.766893e-02	ci left: 4.091921e-01	ci right 4.165008e-01	k: 28899	n:70000
KS ci ratio: 1.077062e-01	ci left: 1.757025e-02	ci right 1.958422e-02	k: 1299	n:70000
GDA   70000 perm   17 sec   (4021 perm/sec)   p_kst 1.855714e-02   p_cons 4.128429e-01   p_joint 2.838571e-02

Joint ci ratio: 7.554246e-02	ci left: 3.133104e-02	ci right 3.380301e-02	k: 2604	n:80000
Cons ci ratio: 1.651183e-02	ci left: 4.098972e-01	ci right 4.167341e-01	k: 33065	n:80000
KS ci ratio: 1.028403e-01	ci left: 1.691939e-02	ci right 1.876582e-02	k: 1426	n:80000
GDA   80000 perm   20 sec   (3951 perm/sec)   p_kst 1.782500e-02   p_cons 4.133125e-01   p_joint 3.255000e-02

Joint ci ratio: 6.940233e-02	ci left: 3.304396e-02	ci right 3.543062e-02	k: 3080	n:90000
Cons ci ratio: 1.554977e-02	ci left: 4.106462e-01	ci right 4.170927e-01	k: 37248	n:90000
KS ci ratio: 9.724830e-02	ci left: 1.687025e-02	ci right 1.860548e-02	k: 1595	n:90000
GDA   90000 perm   23 sec   (3878 perm/sec)   p_kst 1.772222e-02   p_cons 4.138667e-01   p_joint 3.422222e-02

Outputting figure to mutsig2_images.part000000000069/GDA.7_1421_90000_0.017722_0.41387_0.034222.png
                gene_name: GDA
               theta_stop: 0.097 
                    nperm: 90000 
                     p_ks: 0.018 
        ci_ks_bounds_left: 0.017 
       ci_ks_bounds_right: 0.019 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.034 
     ci_joint_bounds_left: 0.033 
    ci_joint_bounds_right: 0.035 

Current progress: 14 percent done.
GARNL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.803670e-01	ci left: 4.101996e-02	ci right 4.924766e-02	k: 450	n:10000
Cons ci ratio: 1.515559e-01	ci left: 5.793006e-02	ci right 6.752661e-02	k: 626	n:10000
KS ci ratio: 1.353332e-01	ci left: 7.213925e-02	ci right 8.270848e-02	k: 773	n:10000
GARNL3   10000 perm   2 sec   (4512 perm/sec)   p_kst 7.730000e-02   p_cons 6.260000e-02   p_joint 4.500000e-02

Joint ci ratio: 1.179902e-01	ci left: 4.920621e-02	ci right 5.542476e-02	k: 1045	n:20000
Cons ci ratio: 1.097109e-01	ci left: 5.669910e-02	ci right 6.332954e-02	k: 1199	n:20000
KS ci ratio: 9.422057e-02	ci left: 7.588504e-02	ci right 8.343770e-02	k: 1592	n:20000
GARNL3   20000 perm   5 sec   (4034 perm/sec)   p_kst 7.960000e-02   p_cons 5.995000e-02   p_joint 5.225000e-02

Joint ci ratio: 7.889428e-02	ci left: 7.302581e-02	ci right 7.905660e-02	k: 2280	n:30000
Cons ci ratio: 8.274648e-02	ci left: 6.671286e-02	ci right 7.250416e-02	k: 2087	n:30000
KS ci ratio: 7.674823e-02	ci left: 7.692145e-02	ci right 8.309351e-02	k: 2399	n:30000
GARNL3   30000 perm   8 sec   (3897 perm/sec)   p_kst 7.996667e-02   p_cons 6.956667e-02   p_joint 7.600000e-02

Outputting figure to mutsig2_images.part000000000069/GARNL3.6_3154_30000_0.079967_0.069567_0.076.png
                gene_name: GARNL3
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.080 
        ci_ks_bounds_left: 0.077 
       ci_ks_bounds_right: 0.083 
                   p_cons: 0.070 
      ci_cons_bounds_left: 0.067 
     ci_cons_bounds_right: 0.073 
                  p_joint: 0.076 
     ci_joint_bounds_left: 0.073 
    ci_joint_bounds_right: 0.079 

Current progress: 16 percent done.
GATA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.327272e-02	ci left: 8.910815e-01	ci right 9.030861e-01	k: 8972	n:10000
Cons ci ratio: 2.445056e-02	ci left: 7.109857e-01	ci right 7.286861e-01	k: 7199	n:10000
KS ci ratio: 3.753630e-02	ci left: 5.117542e-01	ci right 5.314332e-01	k: 5216	n:10000
GATA3   10000 perm   2 sec   (5252 perm/sec)   p_kst 5.216000e-01   p_cons 7.199000e-01   p_joint 8.972000e-01

Outputting figure to mutsig2_images.part000000000069/GATA3.6_1355_10000_0.5216_0.7199_0.8972.png
                gene_name: GATA3
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 18 percent done.
GBF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.185349e-01	ci left: 2.774707e-03	ci right 5.327611e-03	k: 39	n:10000
Cons ci ratio: 1.959510e+00	ci left: 6.187149e-05	ci right 8.764745e-04	k: 3	n:10000
KS ci ratio: 1.514897e-02	ci left: 8.633528e-01	ci right 8.766308e-01	k: 8701	n:10000
GBF1   10000 perm   3 sec   (3994 perm/sec)   p_kst 8.701000e-01   p_cons 3.000000e-04   p_joint 3.900000e-03

Joint ci ratio: 6.042186e-01	ci left: 1.471505e-03	ci right 2.780040e-03	k: 41	n:20000
Cons ci ratio: 1.481324e+00	ci left: 1.101024e-04	ci right 6.528585e-04	k: 6	n:20000
KS ci ratio: 1.070625e-02	ci left: 8.654634e-01	ci right 8.748287e-01	k: 17404	n:20000
GBF1   20000 perm   5 sec   (3638 perm/sec)   p_kst 8.702000e-01   p_cons 3.000000e-04   p_joint 2.050000e-03

Joint ci ratio: 1.736614e-01	ci left: 1.524830e-02	ci right 1.817970e-02	k: 500	n:30000
Cons ci ratio: 1.181688e+00	ci left: 1.598575e-04	ci right 6.129261e-04	k: 10	n:30000
KS ci ratio: 8.881387e-03	ci left: 8.626666e-01	ci right 8.703956e-01	k: 25997	n:30000
GBF1   30000 perm   9 sec   (3494 perm/sec)   p_kst 8.665667e-01   p_cons 3.333333e-04   p_joint 1.666667e-02

Joint ci ratio: 1.731574e-01	ci left: 1.155385e-02	ci right 1.376774e-02	k: 505	n:40000
Cons ci ratio: 1.087022e+00	ci left: 1.550237e-04	ci right 5.239809e-04	k: 12	n:40000
KS ci ratio: 7.726832e-03	ci left: 8.621174e-01	ci right 8.688295e-01	k: 34620	n:40000
GBF1   40000 perm   12 sec   (3409 perm/sec)   p_kst 8.655000e-01   p_cons 3.000000e-04   p_joint 1.262500e-02

Joint ci ratio: 1.791943e-01	ci left: 8.630088e-03	ci right 1.034758e-02	k: 473	n:50000
Cons ci ratio: 8.991298e-01	ci left: 2.133723e-04	ci right 5.688958e-04	k: 18	n:50000
KS ci ratio: 6.046371e-03	ci left: 8.909655e-01	ci right 8.963887e-01	k: 44685	n:50000
GBF1   50000 perm   15 sec   (3346 perm/sec)   p_kst 8.937000e-01   p_cons 3.600000e-04   p_joint 9.460000e-03

Joint ci ratio: 1.812749e-01	ci left: 7.032054e-03	ci right 8.449517e-03	k: 463	n:60000
Cons ci ratio: 8.763852e-01	ci left: 1.906644e-04	ci right 4.944703e-04	k: 19	n:60000
KS ci ratio: 5.527250e-03	ci left: 8.909370e-01	ci right 8.958916e-01	k: 53606	n:60000
GBF1   60000 perm   18 sec   (3286 perm/sec)   p_kst 8.934333e-01   p_cons 3.166667e-04   p_joint 7.716667e-03

Joint ci ratio: 1.745036e-01	ci left: 6.532365e-03	ci right 7.794720e-03	k: 500	n:70000
Cons ci ratio: 8.172364e-01	ci left: 1.969713e-04	ci right 4.757939e-04	k: 22	n:70000
KS ci ratio: 5.110039e-03	ci left: 8.913932e-01	ci right 8.959741e-01	k: 62559	n:70000
GBF1   70000 perm   22 sec   (3218 perm/sec)   p_kst 8.937000e-01   p_cons 3.142857e-04   p_joint 7.142857e-03

Joint ci ratio: 1.962492e-01	ci left: 4.475448e-03	ci right 5.460979e-03	k: 396	n:80000
Cons ci ratio: 7.838726e-01	ci left: 1.922248e-04	ci right 4.463435e-04	k: 24	n:80000
KS ci ratio: 4.757626e-03	ci left: 8.924390e-01	ci right 8.967074e-01	k: 71567	n:80000
GBF1   80000 perm   25 sec   (3171 perm/sec)   p_kst 8.945875e-01   p_cons 3.000000e-04   p_joint 4.950000e-03

Joint ci ratio: 1.857849e-01	ci left: 4.464856e-03	ci right 5.389720e-03	k: 442	n:90000
Cons ci ratio: 7.542870e-01	ci left: 1.887202e-04	ci right 4.232607e-04	k: 26	n:90000
KS ci ratio: 4.489445e-03	ci left: 8.923963e-01	ci right 8.964227e-01	k: 80498	n:90000
GBF1   90000 perm   29 sec   (3127 perm/sec)   p_kst 8.944222e-01   p_cons 2.888889e-04   p_joint 4.911111e-03

Joint ci ratio: 1.762911e-01	ci left: 4.486180e-03	ci right 5.362914e-03	k: 491	n:100000
Cons ci ratio: 7.407029e-01	ci left: 1.779390e-04	ci right 3.928117e-04	k: 27	n:100000
KS ci ratio: 4.245557e-03	ci left: 8.931037e-01	ci right 8.969134e-01	k: 89502	n:100000
GBF1   100000 perm   32 sec   (3085 perm/sec)   p_kst 8.950200e-01   p_cons 2.700000e-04   p_joint 4.910000e-03

Joint ci ratio: 1.963829e-01	ci left: 3.254665e-03	ci right 3.971899e-03	k: 396	n:110000
Cons ci ratio: 7.155900e-01	ci left: 1.765683e-04	ci right 3.786040e-04	k: 29	n:110000
KS ci ratio: 4.052512e-03	ci left: 8.929811e-01	ci right 8.966162e-01	k: 98429	n:110000
GBF1   110000 perm   36 sec   (3045 perm/sec)   p_kst 8.948091e-01   p_cons 2.636364e-04   p_joint 3.600000e-03

Joint ci ratio: 1.869619e-01	ci left: 3.308731e-03	ci right 3.998932e-03	k: 437	n:120000
Cons ci ratio: 7.039589e-01	ci left: 1.686801e-04	ci right 3.568715e-04	k: 30	n:120000
KS ci ratio: 3.879305e-03	ci left: 8.930923e-01	ci right 8.965719e-01	k: 107381	n:120000
GBF1   120000 perm   40 sec   (3005 perm/sec)   p_kst 8.948417e-01   p_cons 2.500000e-04   p_joint 3.641667e-03

Joint ci ratio: 1.812640e-01	ci left: 3.259664e-03	ci right 3.916632e-03	k: 465	n:130000
Cons ci ratio: 6.822952e-01	ci left: 1.683749e-04	ci right 3.474782e-04	k: 32	n:130000
KS ci ratio: 3.725802e-03	ci left: 8.932280e-01	ci right 8.965698e-01	k: 116338	n:130000
GBF1   130000 perm   44 sec   (2965 perm/sec)   p_kst 8.949077e-01   p_cons 2.461538e-04   p_joint 3.576923e-03

Joint ci ratio: 1.859493e-01	ci left: 2.870040e-03	ci right 3.465117e-03	k: 442	n:140000
Cons ci ratio: 6.532470e-01	ci left: 1.741401e-04	ci right 3.476725e-04	k: 35	n:140000
KS ci ratio: 3.591232e-03	ci left: 8.932386e-01	ci right 8.964593e-01	k: 125280	n:140000
GBF1   140000 perm   48 sec   (2928 perm/sec)   p_kst 8.948571e-01   p_cons 2.500000e-04   p_joint 3.157143e-03

Joint ci ratio: 1.847185e-01	ci left: 2.716828e-03	ci right 3.275990e-03	k: 448	n:150000
Cons ci ratio: 5.842695e-01	ci left: 2.131443e-04	ci right 3.937665e-04	k: 44	n:150000
KS ci ratio: 3.480700e-03	ci left: 8.926795e-01	ci right 8.957986e-01	k: 134137	n:150000
GBF1   150000 perm   52 sec   (2890 perm/sec)   p_kst 8.942467e-01   p_cons 2.933333e-04   p_joint 2.986667e-03

Joint ci ratio: 1.792162e-01	ci left: 2.714056e-03	ci right 3.254203e-03	k: 476	n:160000
Cons ci ratio: 5.717050e-01	ci left: 2.104936e-04	ci right 3.834663e-04	k: 46	n:160000
KS ci ratio: 3.362421e-03	ci left: 8.931669e-01	ci right 8.961813e-01	k: 143149	n:160000
GBF1   160000 perm   56 sec   (2852 perm/sec)   p_kst 8.946812e-01   p_cons 2.875000e-04   p_joint 2.975000e-03

Joint ci ratio: 1.733194e-01	ci left: 2.739963e-03	ci right 3.265448e-03	k: 509	n:170000
Cons ci ratio: 5.599176e-01	ci left: 2.081919e-04	ci right 3.743418e-04	k: 48	n:170000
KS ci ratio: 3.265466e-03	ci left: 8.930123e-01	ci right 8.959390e-01	k: 152062	n:170000
GBF1   170000 perm   60 sec   (2817 perm/sec)   p_kst 8.944824e-01   p_cons 2.823529e-04   p_joint 2.994118e-03

Joint ci ratio: 1.700226e-01	ci left: 2.694075e-03	ci right 3.199922e-03	k: 529	n:180000
Cons ci ratio: 5.488305e-01	ci left: 2.061788e-04	ci right 3.661992e-04	k: 50	n:180000
KS ci ratio: 3.179603e-03	ci left: 8.926861e-01	ci right 8.955345e-01	k: 160941	n:180000
GBF1   180000 perm   65 sec   (2783 perm/sec)   p_kst 8.941167e-01   p_cons 2.777778e-04   p_joint 2.938889e-03

Joint ci ratio: 1.495049e-01	ci left: 3.335664e-03	ci right 3.879654e-03	k: 684	n:190000
Cons ci ratio: 5.333672e-01	ci left: 2.089575e-04	ci right 3.648544e-04	k: 53	n:190000
KS ci ratio: 3.096875e-03	ci left: 8.925966e-01	ci right 8.953703e-01	k: 169858	n:190000
GBF1   190000 perm   69 sec   (2750 perm/sec)   p_kst 8.939895e-01   p_cons 2.789474e-04   p_joint 3.600000e-03

Joint ci ratio: 1.460299e-01	ci left: 3.327780e-03	ci right 3.856769e-03	k: 717	n:200000
Cons ci ratio: 5.102640e-01	ci left: 2.202163e-04	ci right 3.748763e-04	k: 58	n:200000
KS ci ratio: 3.015981e-03	ci left: 8.927885e-01	ci right 8.954901e-01	k: 178829	n:200000
GBF1   200000 perm   74 sec   (2718 perm/sec)   p_kst 8.941450e-01   p_cons 2.900000e-04   p_joint 3.585000e-03

Joint ci ratio: 1.483404e-01	ci left: 3.068379e-03	ci right 3.564534e-03	k: 695	n:210000
Cons ci ratio: 4.977658e-01	ci left: 2.221983e-04	ci right 3.731134e-04	k: 61	n:210000
KS ci ratio: 2.941698e-03	ci left: 8.929245e-01	ci right 8.955598e-01	k: 187792	n:210000
GBF1   210000 perm   78 sec   (2687 perm/sec)   p_kst 8.942476e-01   p_cons 2.904762e-04   p_joint 3.309524e-03

Joint ci ratio: 1.465667e-01	ci left: 3.003322e-03	ci right 3.482641e-03	k: 712	n:220000
Cons ci ratio: 4.938017e-01	ci left: 2.160750e-04	ci right 3.612638e-04	k: 62	n:220000
KS ci ratio: 2.873128e-03	ci left: 8.930169e-01	ci right 8.955909e-01	k: 196748	n:220000
GBF1   220000 perm   83 sec   (2655 perm/sec)   p_kst 8.943091e-01   p_cons 2.818182e-04   p_joint 3.236364e-03

Joint ci ratio: 1.600918e-01	ci left: 2.391827e-03	ci right 2.812169e-03	k: 597	n:230000
Cons ci ratio: 4.824484e-01	ci left: 2.181180e-04	ci right 3.601940e-04	k: 65	n:230000
KS ci ratio: 2.811271e-03	ci left: 8.929577e-01	ci right 8.954759e-01	k: 205671	n:230000
GBF1   230000 perm   88 sec   (2624 perm/sec)   p_kst 8.942217e-01   p_cons 2.826087e-04   p_joint 2.595652e-03

Joint ci ratio: 1.565954e-01	ci left: 2.400210e-03	ci right 2.811948e-03	k: 624	n:240000
Cons ci ratio: 4.718437e-01	ci left: 2.200259e-04	ci right 3.591789e-04	k: 68	n:240000
KS ci ratio: 2.751122e-03	ci left: 8.930505e-01	ci right 8.955149e-01	k: 214629	n:240000
GBF1   240000 perm   92 sec   (2596 perm/sec)   p_kst 8.942875e-01   p_cons 2.833333e-04   p_joint 2.600000e-03

Joint ci ratio: 1.569817e-01	ci left: 2.292663e-03	ci right 2.687013e-03	k: 621	n:250000
Cons ci ratio: 4.718465e-01	ci left: 2.112246e-04	ci right 3.448123e-04	k: 68	n:250000
KS ci ratio: 2.694846e-03	ci left: 8.931244e-01	ci right 8.955384e-01	k: 223584	n:250000
GBF1   250000 perm   97 sec   (2568 perm/sec)   p_kst 8.943360e-01   p_cons 2.720000e-04   p_joint 2.484000e-03

Joint ci ratio: 1.534442e-01	ci left: 2.311692e-03	ci right 2.699531e-03	k: 650	n:260000
Cons ci ratio: 4.651540e-01	ci left: 2.098844e-04	ci right 3.401448e-04	k: 70	n:260000
KS ci ratio: 2.644575e-03	ci left: 8.929998e-01	ci right 8.953683e-01	k: 232489	n:260000
GBF1   260000 perm   102 sec   (2541 perm/sec)   p_kst 8.941885e-01   p_cons 2.692308e-04   p_joint 2.500000e-03

Joint ci ratio: 1.557463e-01	ci left: 2.158412e-03	ci right 2.526475e-03	k: 631	n:270000
Cons ci ratio: 4.587384e-01	ci left: 2.086559e-04	ci right 3.358109e-04	k: 72	n:270000
KS ci ratio: 2.592389e-03	ci left: 8.932235e-01	ci right 8.955458e-01	k: 241485	n:270000
GBF1   270000 perm   107 sec   (2513 perm/sec)   p_kst 8.943889e-01   p_cons 2.666667e-04   p_joint 2.337037e-03

Joint ci ratio: 1.234919e-01	ci left: 3.364219e-03	ci right 3.810439e-03	k: 1003	n:280000
Cons ci ratio: 4.556297e-01	ci left: 2.043638e-04	ci right 3.277981e-04	k: 73	n:280000
KS ci ratio: 2.545958e-03	ci left: 8.932235e-01	ci right 8.955040e-01	k: 250423	n:280000
GBF1   280000 perm   113 sec   (2486 perm/sec)   p_kst 8.943679e-01   p_cons 2.607143e-04   p_joint 3.582143e-03

Joint ci ratio: 1.241214e-01	ci left: 3.214781e-03	ci right 3.643513e-03	k: 993	n:290000
Cons ci ratio: 4.556318e-01	ci left: 1.973166e-04	ci right 3.164951e-04	k: 73	n:290000
KS ci ratio: 2.500976e-03	ci left: 8.932966e-01	ci right 8.955369e-01	k: 259382	n:290000
GBF1   290000 perm   118 sec   (2461 perm/sec)   p_kst 8.944207e-01   p_cons 2.517241e-04   p_joint 3.424138e-03

Joint ci ratio: 1.225309e-01	ci left: 3.191612e-03	ci right 3.611404e-03	k: 1019	n:300000
Cons ci ratio: 4.495971e-01	ci left: 1.966458e-04	ci right 3.133672e-04	k: 75	n:300000
KS ci ratio: 2.458601e-03	ci left: 8.933417e-01	ci right 8.955440e-01	k: 268334	n:300000
GBF1   300000 perm   123 sec   (2436 perm/sec)   p_kst 8.944467e-01   p_cons 2.500000e-04   p_joint 3.396667e-03

Joint ci ratio: 1.044919e-01	ci left: 4.283128e-03	ci right 4.758466e-03	k: 1400	n:310000
Cons ci ratio: 4.354979e-01	ci left: 2.046342e-04	ci right 3.211735e-04	k: 80	n:310000
KS ci ratio: 2.417979e-03	ci left: 8.934101e-01	ci right 8.955761e-01	k: 277294	n:310000
GBF1   310000 perm   129 sec   (2411 perm/sec)   p_kst 8.944968e-01   p_cons 2.580645e-04   p_joint 4.516129e-03

Joint ci ratio: 1.026395e-01	ci left: 4.304529e-03	ci right 4.773263e-03	k: 1451	n:320000
Cons ci ratio: 4.276503e-01	ci left: 2.065959e-04	ci right 3.215243e-04	k: 83	n:320000
KS ci ratio: 2.380881e-03	ci left: 8.933489e-01	ci right 8.954815e-01	k: 286214	n:320000
GBF1   320000 perm   134 sec   (2386 perm/sec)   p_kst 8.944188e-01   p_cons 2.593750e-04   p_joint 4.534375e-03

Joint ci ratio: 1.014603e-01	ci left: 4.274486e-03	ci right 4.734282e-03	k: 1485	n:330000
Cons ci ratio: 4.276520e-01	ci left: 2.003352e-04	ci right 3.117815e-04	k: 83	n:330000
KS ci ratio: 2.342880e-03	ci left: 8.934986e-01	ci right 8.955974e-01	k: 295202	n:330000
GBF1   330000 perm   140 sec   (2363 perm/sec)   p_kst 8.945515e-01   p_cons 2.515152e-04   p_joint 4.500000e-03

Joint ci ratio: 1.016734e-01	ci left: 4.131552e-03	ci right 4.576961e-03	k: 1479	n:340000
Cons ci ratio: 4.226504e-01	ci left: 1.996959e-04	ci right 3.091197e-04	k: 85	n:340000
KS ci ratio: 2.307036e-03	ci left: 8.936073e-01	ci right 8.956742e-01	k: 304179	n:340000
GBF1   340000 perm   145 sec   (2339 perm/sec)   p_kst 8.946441e-01   p_cons 2.500000e-04   p_joint 4.350000e-03

Joint ci ratio: 1.005600e-01	ci left: 4.105406e-03	ci right 4.542863e-03	k: 1512	n:350000
Cons ci ratio: 4.154657e-01	ci left: 2.016578e-04	ci right 3.097580e-04	k: 88	n:350000
KS ci ratio: 2.274715e-03	ci left: 8.935493e-01	ci right 8.955870e-01	k: 313100	n:350000
GBF1   350000 perm   151 sec   (2316 perm/sec)   p_kst 8.945714e-01   p_cons 2.514286e-04   p_joint 4.320000e-03

Joint ci ratio: 9.865269e-02	ci left: 4.151178e-03	ci right 4.584638e-03	k: 1571	n:360000
Cons ci ratio: 4.108751e-01	ci left: 2.010342e-04	ci right 3.072836e-04	k: 90	n:360000
KS ci ratio: 2.241436e-03	ci left: 8.936872e-01	ci right 8.956953e-01	k: 322090	n:360000
GBF1   360000 perm   157 sec   (2294 perm/sec)   p_kst 8.946944e-01   p_cons 2.500000e-04   p_joint 4.363889e-03

Joint ci ratio: 1.003059e-01	ci left: 3.904550e-03	ci right 4.319491e-03	k: 1520	n:370000
Cons ci ratio: 4.086369e-01	ci left: 1.980248e-04	ci right 3.019587e-04	k: 91	n:370000
KS ci ratio: 2.211127e-03	ci left: 8.936848e-01	ci right 8.956657e-01	k: 331031	n:370000
GBF1   370000 perm   163 sec   (2272 perm/sec)   p_kst 8.946784e-01   p_cons 2.459459e-04   p_joint 4.108108e-03

Joint ci ratio: 9.332918e-02	ci left: 4.405315e-03	ci right 4.839134e-03	k: 1755	n:380000
Cons ci ratio: 4.000323e-01	ci left: 2.022695e-04	ci right 3.056035e-04	k: 95	n:380000
KS ci ratio: 2.181192e-03	ci left: 8.937541e-01	ci right 8.957083e-01	k: 339999	n:380000
GBF1   380000 perm   169 sec   (2250 perm/sec)   p_kst 8.947342e-01   p_cons 2.500000e-04   p_joint 4.618421e-03

Joint ci ratio: 1.032541e-01	ci left: 3.491876e-03	ci right 3.874530e-03	k: 1435	n:390000
Cons ci ratio: 3.939243e-01	ci left: 2.040075e-04	ci right 3.062239e-04	k: 98	n:390000
KS ci ratio: 2.152617e-03	ci left: 8.938046e-01	ci right 8.957332e-01	k: 348961	n:390000
GBF1   390000 perm   175 sec   (2229 perm/sec)   p_kst 8.947718e-01   p_cons 2.512821e-04   p_joint 3.679487e-03

Joint ci ratio: 1.035124e-01	ci left: 3.387523e-03	ci right 3.759726e-03	k: 1428	n:400000
Cons ci ratio: 3.880879e-01	ci left: 2.056700e-04	ci right 3.068021e-04	k: 101	n:400000
KS ci ratio: 2.126095e-03	ci left: 8.937673e-01	ci right 8.956720e-01	k: 357889	n:400000
GBF1   400000 perm   181 sec   (2208 perm/sec)   p_kst 8.947225e-01   p_cons 2.525000e-04   p_joint 3.570000e-03

Joint ci ratio: 1.022326e-01	ci left: 3.390446e-03	ci right 3.758088e-03	k: 1464	n:410000
Cons ci ratio: 3.843384e-01	ci left: 2.050580e-04	ci right 3.046686e-04	k: 103	n:410000
KS ci ratio: 2.099278e-03	ci left: 8.938446e-01	ci right 8.957254e-01	k: 366863	n:410000
GBF1   410000 perm   187 sec   (2188 perm/sec)   p_kst 8.947878e-01   p_cons 2.512195e-04   p_joint 3.570732e-03

Joint ci ratio: 1.019927e-01	ci left: 3.325957e-03	ci right 3.685709e-03	k: 1471	n:420000
Cons ci ratio: 3.825046e-01	ci left: 2.023270e-04	ci right 3.000241e-04	k: 104	n:420000
KS ci ratio: 2.074369e-03	ci left: 8.938347e-01	ci right 8.956931e-01	k: 375802	n:420000
GBF1   420000 perm   194 sec   (2168 perm/sec)   p_kst 8.947667e-01   p_cons 2.476190e-04   p_joint 3.502381e-03

Joint ci ratio: 1.007009e-01	ci left: 3.334742e-03	ci right 3.690605e-03	k: 1509	n:430000
Cons ci ratio: 3.703565e-01	ci left: 2.123612e-04	ci right 3.108584e-04	k: 111	n:430000
KS ci ratio: 2.050427e-03	ci left: 8.938161e-01	ci right 8.956530e-01	k: 384737	n:430000
GBF1   430000 perm   200 sec   (2148 perm/sec)   p_kst 8.947372e-01   p_cons 2.581395e-04   p_joint 3.509302e-03

Joint ci ratio: 1.029526e-01	ci left: 3.114968e-03	ci right 3.455261e-03	k: 1444	n:440000
Cons ci ratio: 3.654937e-01	ci left: 2.137227e-04	ci right 3.112392e-04	k: 114	n:440000
KS ci ratio: 2.027001e-03	ci left: 8.938258e-01	ci right 8.956417e-01	k: 393684	n:440000
GBF1   440000 perm   207 sec   (2129 perm/sec)   p_kst 8.947364e-01   p_cons 2.590909e-04   p_joint 3.281818e-03

Joint ci ratio: 1.021440e-01	ci left: 3.095545e-03	ci right 3.430901e-03	k: 1467	n:450000
Cons ci ratio: 3.592979e-01	ci left: 2.170529e-04	ci right 3.140175e-04	k: 118	n:450000
KS ci ratio: 2.004857e-03	ci left: 8.937884e-01	ci right 8.955843e-01	k: 402610	n:450000
GBF1   450000 perm   213 sec   (2111 perm/sec)   p_kst 8.946889e-01   p_cons 2.622222e-04   p_joint 3.260000e-03

Joint ci ratio: 8.577776e-02	ci left: 4.325641e-03	ci right 4.715423e-03	k: 2078	n:460000
Cons ci ratio: 3.519786e-01	ci left: 2.222331e-04	ci right 3.190275e-04	k: 123	n:460000
KS ci ratio: 1.983949e-03	ci left: 8.937025e-01	ci right 8.954795e-01	k: 411513	n:460000
GBF1   460000 perm   220 sec   (2093 perm/sec)   p_kst 8.945935e-01   p_cons 2.673913e-04   p_joint 4.517391e-03

Joint ci ratio: 8.470416e-02	ci left: 4.343970e-03	ci right 4.730262e-03	k: 2131	n:470000
Cons ci ratio: 3.519796e-01	ci left: 2.175046e-04	ci right 3.122398e-04	k: 123	n:470000
KS ci ratio: 1.962994e-03	ci left: 8.936866e-01	ci right 8.954447e-01	k: 420447	n:470000
GBF1   470000 perm   226 sec   (2075 perm/sec)   p_kst 8.945681e-01   p_cons 2.617021e-04   p_joint 4.534043e-03

Joint ci ratio: 8.401825e-02	ci left: 4.324847e-03	ci right 4.706171e-03	k: 2166	n:480000
Cons ci ratio: 3.464358e-01	ci left: 2.205758e-04	ci right 3.147961e-04	k: 127	n:480000
KS ci ratio: 1.942474e-03	ci left: 8.936923e-01	ci right 8.954321e-01	k: 429391	n:480000
GBF1   480000 perm   233 sec   (2056 perm/sec)   p_kst 8.945646e-01   p_cons 2.645833e-04   p_joint 4.512500e-03

Joint ci ratio: 8.308383e-02	ci left: 4.334497e-03	ci right 4.712215e-03	k: 2215	n:490000
Cons ci ratio: 3.424459e-01	ci left: 2.216672e-04	ci right 3.150216e-04	k: 130	n:490000
KS ci ratio: 1.923063e-03	ci left: 8.936508e-01	ci right 8.953731e-01	k: 438312	n:490000
GBF1   490000 perm   240 sec   (2038 perm/sec)   p_kst 8.945143e-01   p_cons 2.653061e-04   p_joint 4.520408e-03

Joint ci ratio: 8.489589e-02	ci left: 4.065689e-03	ci right 4.428093e-03	k: 2122	n:500000
Cons ci ratio: 3.385907e-01	ci left: 2.227208e-04	ci right 3.152323e-04	k: 133	n:500000
KS ci ratio: 1.903879e-03	ci left: 8.936452e-01	ci right 8.953502e-01	k: 447250	n:500000
GBF1   500000 perm   247 sec   (2021 perm/sec)   p_kst 8.945000e-01   p_cons 2.660000e-04   p_joint 4.244000e-03

Joint ci ratio: 8.579686e-02	ci left: 3.901522e-03	ci right 4.253168e-03	k: 2078	n:510000
Cons ci ratio: 3.360921e-01	ci left: 2.219432e-04	ci right 3.133038e-04	k: 135	n:510000
KS ci ratio: 1.884593e-03	ci left: 8.937068e-01	ci right 8.953946e-01	k: 456222	n:510000
GBF1   510000 perm   255 sec   (2003 perm/sec)   p_kst 8.945529e-01   p_cons 2.647059e-04   p_joint 4.074510e-03

Joint ci ratio: 8.534803e-02	ci left: 3.867893e-03	ci right 4.214592e-03	k: 2100	n:520000
Cons ci ratio: 3.336480e-01	ci left: 2.211978e-04	ci right 3.114472e-04	k: 137	n:520000
KS ci ratio: 1.866717e-03	ci left: 8.936812e-01	ci right 8.953529e-01	k: 465150	n:520000
GBF1   520000 perm   262 sec   (1987 perm/sec)   p_kst 8.945192e-01   p_cons 2.634615e-04   p_joint 4.038462e-03

Joint ci ratio: 9.455925e-02	ci left: 3.079202e-03	ci right 3.386645e-03	k: 1712	n:530000
Cons ci ratio: 3.324461e-01	ci left: 2.187532e-04	ci right 3.076149e-04	k: 138	n:530000
KS ci ratio: 1.849747e-03	ci left: 8.936150e-01	ci right 8.952713e-01	k: 474056	n:530000
GBF1   530000 perm   269 sec   (1970 perm/sec)   p_kst 8.944453e-01   p_cons 2.603774e-04   p_joint 3.230189e-03

Joint ci ratio: 9.355388e-02	ci left: 3.089087e-03	ci right 3.394059e-03	k: 1749	n:540000
Cons ci ratio: 3.266228e-01	ci left: 2.231957e-04	ci right 3.119407e-04	k: 143	n:540000
KS ci ratio: 1.833033e-03	ci left: 8.935717e-01	ci right 8.952130e-01	k: 482973	n:540000
GBF1   540000 perm   276 sec   (1954 perm/sec)   p_kst 8.943944e-01   p_cons 2.648148e-04   p_joint 3.238889e-03

Joint ci ratio: 9.621267e-02	ci left: 2.864277e-03	ci right 3.155543e-03	k: 1654	n:550000
Cons ci ratio: 3.232726e-01	ci left: 2.241473e-04	ci right 3.121669e-04	k: 146	n:550000
KS ci ratio: 1.815819e-03	ci left: 8.936286e-01	ci right 8.952545e-01	k: 491944	n:550000
GBF1   550000 perm   284 sec   (1938 perm/sec)   p_kst 8.944436e-01   p_cons 2.654545e-04   p_joint 3.007273e-03

Joint ci ratio: 9.595394e-02	ci left: 2.828812e-03	ci right 3.115654e-03	k: 1663	n:560000
Cons ci ratio: 3.210959e-01	ci left: 2.234273e-04	ci right 3.104518e-04	k: 148	n:560000
KS ci ratio: 1.799949e-03	ci left: 8.935921e-01	ci right 8.952038e-01	k: 500864	n:560000
GBF1   560000 perm   291 sec   (1923 perm/sec)   p_kst 8.944000e-01   p_cons 2.642857e-04   p_joint 2.969643e-03

Joint ci ratio: 9.659901e-02	ci left: 2.741510e-03	ci right 3.021475e-03	k: 1641	n:570000
Cons ci ratio: 3.179113e-01	ci left: 2.243486e-04	ci right 3.106891e-04	k: 151	n:570000
KS ci ratio: 1.783510e-03	ci left: 8.936609e-01	ci right 8.952579e-01	k: 509843	n:570000
GBF1   570000 perm   299 sec   (1906 perm/sec)   p_kst 8.944614e-01   p_cons 2.649123e-04   p_joint 2.878947e-03

Joint ci ratio: 9.581462e-02	ci left: 2.739674e-03	ci right 3.017052e-03	k: 1668	n:580000
Cons ci ratio: 3.148196e-01	ci left: 2.252423e-04	ci right 3.109141e-04	k: 154	n:580000
KS ci ratio: 1.769095e-03	ci left: 8.935578e-01	ci right 8.951417e-01	k: 518724	n:580000
GBF1   580000 perm   307 sec   (1891 perm/sec)   p_kst 8.943517e-01   p_cons 2.655172e-04   p_joint 2.875862e-03

Joint ci ratio: 9.524635e-02	ci left: 2.726327e-03	ci right 3.000625e-03	k: 1688	n:590000
Cons ci ratio: 3.118164e-01	ci left: 2.261097e-04	ci right 3.111276e-04	k: 157	n:590000
KS ci ratio: 1.753669e-03	ci left: 8.936045e-01	ci right 8.951747e-01	k: 527691	n:590000
GBF1   590000 perm   315 sec   (1876 perm/sec)   p_kst 8.943915e-01   p_cons 2.661017e-04   p_joint 2.861017e-03

Joint ci ratio: 8.365054e-02	ci left: 3.494082e-03	ci right 3.800741e-03	k: 2187	n:600000
Cons ci ratio: 3.088976e-01	ci left: 2.269518e-04	ci right 3.113303e-04	k: 160	n:600000
KS ci ratio: 1.739023e-03	ci left: 8.936079e-01	ci right 8.951649e-01	k: 536633	n:600000
GBF1   600000 perm   322 sec   (1860 perm/sec)   p_kst 8.943883e-01   p_cons 2.666667e-04   p_joint 3.645000e-03

Joint ci ratio: 8.658109e-02	ci left: 3.204134e-03	ci right 3.495696e-03	k: 2042	n:610000
Cons ci ratio: 3.060592e-01	ci left: 2.277699e-04	ci right 3.115228e-04	k: 163	n:610000
KS ci ratio: 1.723869e-03	ci left: 8.937067e-01	ci right 8.952502e-01	k: 545633	n:610000
GBF1   610000 perm   331 sec   (1846 perm/sec)   p_kst 8.944803e-01   p_cons 2.672131e-04   p_joint 3.347541e-03

Joint ci ratio: 8.601503e-02	ci left: 3.195063e-03	ci right 3.483802e-03	k: 2069	n:620000
Cons ci ratio: 3.014971e-01	ci left: 2.315463e-04	ci right 3.151754e-04	k: 168	n:620000
KS ci ratio: 1.710127e-03	ci left: 8.936890e-01	ci right 8.952202e-01	k: 554563	n:620000
GBF1   620000 perm   339 sec   (1832 perm/sec)   p_kst 8.944565e-01   p_cons 2.709677e-04   p_joint 3.337097e-03

Joint ci ratio: 8.527651e-02	ci left: 3.200267e-03	ci right 3.486870e-03	k: 2105	n:630000
Cons ci ratio: 2.971332e-01	ci left: 2.352116e-04	ci right 3.187032e-04	k: 173	n:630000
KS ci ratio: 1.696109e-03	ci left: 8.937388e-01	ci right 8.952575e-01	k: 563535	n:630000
GBF1   630000 perm   347 sec   (1818 perm/sec)   p_kst 8.945000e-01   p_cons 2.746032e-04   p_joint 3.341270e-03

Joint ci ratio: 8.529907e-02	ci left: 3.148730e-03	ci right 3.430796e-03	k: 2104	n:640000
Cons ci ratio: 2.962834e-01	ci left: 2.329826e-04	ci right 3.154020e-04	k: 174	n:640000
KS ci ratio: 1.683224e-03	ci left: 8.936978e-01	ci right 8.952049e-01	k: 572450	n:640000
GBF1   640000 perm   355 sec   (1804 perm/sec)   p_kst 8.944531e-01   p_cons 2.718750e-04   p_joint 3.287500e-03

Joint ci ratio: 8.532157e-02	ci left: 3.098779e-03	ci right 3.376447e-03	k: 2103	n:650000
Cons ci ratio: 2.929540e-01	ci left: 2.350974e-04	ci right 3.171569e-04	k: 178	n:650000
KS ci ratio: 1.670627e-03	ci left: 8.936581e-01	ci right 8.951538e-01	k: 581365	n:650000
GBF1   650000 perm   363 sec   (1791 perm/sec)   p_kst 8.944077e-01   p_cons 2.738462e-04   p_joint 3.235385e-03

Joint ci ratio: 8.528302e-02	ci left: 3.054790e-03	ci right 3.328387e-03	k: 2105	n:660000
Cons ci ratio: 2.905294e-01	ci left: 2.357482e-04	ci right 3.172286e-04	k: 181	n:660000
KS ci ratio: 1.657511e-03	ci left: 8.937108e-01	ci right 8.951948e-01	k: 590340	n:660000
GBF1   660000 perm   371 sec   (1778 perm/sec)   p_kst 8.944545e-01   p_cons 2.742424e-04   p_joint 3.189394e-03

Joint ci ratio: 8.478173e-02	ci left: 3.045716e-03	ci right 3.316817e-03	k: 2130	n:670000
Cons ci ratio: 2.889463e-01	ci left: 2.349977e-04	ci right 3.156953e-04	k: 183	n:670000
KS ci ratio: 1.644985e-03	ci left: 8.937290e-01	ci right 8.952019e-01	k: 599293	n:670000
GBF1   670000 perm   380 sec   (1765 perm/sec)   p_kst 8.944672e-01   p_cons 2.731343e-04   p_joint 3.179104e-03

Joint ci ratio: 8.470401e-02	ci left: 3.006681e-03	ci right 3.274050e-03	k: 2134	n:680000
Cons ci ratio: 2.866192e-01	ci left: 2.356352e-04	ci right 3.157820e-04	k: 186	n:680000
KS ci ratio: 1.632574e-03	ci left: 8.937660e-01	ci right 8.952277e-01	k: 608259	n:680000
GBF1   680000 perm   388 sec   (1753 perm/sec)   p_kst 8.944985e-01   p_cons 2.735294e-04   p_joint 3.138235e-03

Joint ci ratio: 8.413468e-02	ci left: 3.004248e-03	ci right 3.269516e-03	k: 2163	n:690000
Cons ci ratio: 2.858562e-01	ci left: 2.335654e-04	ci right 3.127586e-04	k: 187	n:690000
KS ci ratio: 1.620899e-03	ci left: 8.937481e-01	ci right 8.951993e-01	k: 617188	n:690000
GBF1   690000 perm   397 sec   (1739 perm/sec)   p_kst 8.944754e-01   p_cons 2.710145e-04   p_joint 3.134783e-03

Joint ci ratio: 8.351939e-02	ci left: 3.006086e-03	ci right 3.269481e-03	k: 2195	n:700000
Cons ci ratio: 2.828626e-01	ci left: 2.355356e-04	ci right 3.144113e-04	k: 191	n:700000
KS ci ratio: 1.609398e-03	ci left: 8.937393e-01	ci right 8.951803e-01	k: 626123	n:700000
GBF1   700000 perm   405 sec   (1727 perm/sec)   p_kst 8.944614e-01   p_cons 2.728571e-04   p_joint 3.135714e-03

Joint ci ratio: 8.502982e-02	ci left: 2.857572e-03	ci right 3.112707e-03	k: 2118	n:710000
Cons ci ratio: 2.821292e-01	ci left: 2.335269e-04	ci right 3.114910e-04	k: 192	n:710000
KS ci ratio: 1.597912e-03	ci left: 8.937577e-01	ci right 8.951884e-01	k: 635077	n:710000
GBF1   710000 perm   414 sec   (1714 perm/sec)   p_kst 8.944746e-01   p_cons 2.704225e-04   p_joint 2.983099e-03

Joint ci ratio: 8.449339e-02	ci left: 2.854588e-03	ci right 3.107770e-03	k: 2145	n:720000
Cons ci ratio: 2.821298e-01	ci left: 2.302834e-04	ci right 3.071648e-04	k: 192	n:720000
KS ci ratio: 1.586949e-03	ci left: 8.937422e-01	ci right 8.951630e-01	k: 644007	n:720000
GBF1   720000 perm   423 sec   (1702 perm/sec)   p_kst 8.944542e-01   p_cons 2.666667e-04   p_joint 2.979167e-03

Joint ci ratio: 8.400577e-02	ci left: 2.849009e-03	ci right 3.100166e-03	k: 2170	n:730000
Cons ci ratio: 2.792506e-01	ci left: 2.322227e-04	ci right 3.088211e-04	k: 196	n:730000
KS ci ratio: 1.575911e-03	ci left: 8.937628e-01	ci right 8.951738e-01	k: 652963	n:730000
GBF1   730000 perm   432 sec   (1690 perm/sec)   p_kst 8.944699e-01   p_cons 2.684932e-04   p_joint 2.972603e-03

Joint ci ratio: 8.339329e-02	ci left: 2.852847e-03	ci right 3.102420e-03	k: 2202	n:740000
Cons ci ratio: 2.778439e-01	ci left: 2.315984e-04	ci right 3.075389e-04	k: 198	n:740000
KS ci ratio: 1.565290e-03	ci left: 8.937599e-01	ci right 8.951613e-01	k: 661902	n:740000
GBF1   740000 perm   441 sec   (1679 perm/sec)   p_kst 8.944622e-01   p_cons 2.675676e-04   p_joint 2.975676e-03

Joint ci ratio: 8.579101e-02	ci left: 2.656877e-03	ci right 2.896323e-03	k: 2081	n:750000
Cons ci ratio: 2.778444e-01	ci left: 2.285104e-04	ci right 3.034385e-04	k: 198	n:750000
KS ci ratio: 1.554596e-03	ci left: 8.937919e-01	ci right 8.951837e-01	k: 670867	n:750000
GBF1   750000 perm   450 sec   (1666 perm/sec)   p_kst 8.944893e-01   p_cons 2.640000e-04   p_joint 2.774667e-03

Joint ci ratio: 8.579258e-02	ci left: 2.621916e-03	ci right 2.858215e-03	k: 2081	n:760000
Cons ci ratio: 2.750931e-01	ci left: 2.304021e-04	ci right 3.050729e-04	k: 202	n:760000
KS ci ratio: 1.544355e-03	ci left: 8.937940e-01	ci right 8.951767e-01	k: 679810	n:760000
GBF1   760000 perm   459 sec   (1655 perm/sec)   p_kst 8.944868e-01   p_cons 2.657895e-04   p_joint 2.738158e-03

Joint ci ratio: 8.522141e-02	ci left: 2.623451e-03	ci right 2.858237e-03	k: 2109	n:770000
Cons ci ratio: 2.750936e-01	ci left: 2.274098e-04	ci right 3.011110e-04	k: 202	n:770000
KS ci ratio: 1.533902e-03	ci left: 8.938469e-01	ci right 8.952203e-01	k: 688792	n:770000
GBF1   770000 perm   469 sec   (1643 perm/sec)   p_kst 8.945351e-01   p_cons 2.623377e-04   p_joint 2.738961e-03

Joint ci ratio: 8.518244e-02	ci left: 2.592325e-03	ci right 2.824213e-03	k: 2111	n:780000
Cons ci ratio: 2.744188e-01	ci left: 2.256880e-04	ci right 2.986208e-04	k: 203	n:780000
KS ci ratio: 1.523668e-03	ci left: 8.938972e-01	ci right 8.952615e-01	k: 697773	n:780000
GBF1   780000 perm   478 sec   (1631 perm/sec)   p_kst 8.945808e-01   p_cons 2.602564e-04   p_joint 2.706410e-03

Joint ci ratio: 8.456387e-02	ci left: 2.597919e-03	ci right 2.828537e-03	k: 2142	n:790000
Cons ci ratio: 2.717671e-01	ci left: 2.275478e-04	ci right 3.002498e-04	k: 207	n:790000
KS ci ratio: 1.513362e-03	ci left: 8.939805e-01	ci right 8.953356e-01	k: 706781	n:790000
GBF1   790000 perm   488 sec   (1620 perm/sec)   p_kst 8.946595e-01   p_cons 2.620253e-04   p_joint 2.711392e-03

Joint ci ratio: 8.077900e-02	ci left: 2.816412e-03	ci right 3.054710e-03	k: 2347	n:800000
Cons ci ratio: 2.691909e-01	ci left: 2.293645e-04	ci right 3.018349e-04	k: 211	n:800000
KS ci ratio: 1.503411e-03	ci left: 8.940429e-01	ci right 8.953892e-01	k: 715774	n:800000
GBF1   800000 perm   497 sec   (1609 perm/sec)   p_kst 8.947175e-01   p_cons 2.637500e-04   p_joint 2.933750e-03

Joint ci ratio: 8.030169e-02	ci left: 2.815513e-03	ci right 3.052261e-03	k: 2375	n:810000
Cons ci ratio: 2.691913e-01	ci left: 2.265328e-04	ci right 2.981086e-04	k: 211	n:810000
KS ci ratio: 1.493947e-03	ci left: 8.940667e-01	ci right 8.954046e-01	k: 724737	n:810000
GBF1   810000 perm   507 sec   (1598 perm/sec)   p_kst 8.947370e-01   p_cons 2.604938e-04   p_joint 2.932099e-03

Joint ci ratio: 8.028619e-02	ci left: 2.782371e-03	ci right 3.016285e-03	k: 2376	n:820000
Cons ci ratio: 2.679306e-01	ci left: 2.260450e-04	ci right 2.970760e-04	k: 213	n:820000
KS ci ratio: 1.484774e-03	ci left: 8.940752e-01	ci right 8.954049e-01	k: 733688	n:820000
GBF1   820000 perm   517 sec   (1587 perm/sec)   p_kst 8.947415e-01   p_cons 2.597561e-04   p_joint 2.897561e-03

Joint ci ratio: 8.057707e-02	ci left: 2.728775e-03	ci right 2.959054e-03	k: 2359	n:830000
Cons ci ratio: 2.666873e-01	ci left: 2.255697e-04	ci right 2.960676e-04	k: 215	n:830000
KS ci ratio: 1.475741e-03	ci left: 8.940872e-01	ci right 8.954088e-01	k: 742642	n:830000
GBF1   830000 perm   527 sec   (1576 perm/sec)   p_kst 8.947494e-01   p_cons 2.590361e-04   p_joint 2.842169e-03

Joint ci ratio: 7.840913e-02	ci left: 2.850316e-03	ci right 3.084084e-03	k: 2491	n:840000
Cons ci ratio: 2.654613e-01	ci left: 2.251065e-04	ci right 2.950823e-04	k: 217	n:840000
KS ci ratio: 1.467037e-03	ci left: 8.940775e-01	ci right 8.953912e-01	k: 751578	n:840000
GBF1   840000 perm   537 sec   (1566 perm/sec)   p_kst 8.947357e-01   p_cons 2.583333e-04   p_joint 2.965476e-03

Joint ci ratio: 7.795687e-02	ci left: 2.850234e-03	ci right 3.082586e-03	k: 2520	n:850000
Cons ci ratio: 2.642520e-01	ci left: 2.246549e-04	ci right 2.941196e-04	k: 219	n:850000
KS ci ratio: 1.458867e-03	ci left: 8.940184e-01	ci right 8.953248e-01	k: 760472	n:850000
GBF1   850000 perm   547 sec   (1555 perm/sec)   p_kst 8.946729e-01   p_cons 2.576471e-04   p_joint 2.964706e-03

Joint ci ratio: 7.805143e-02	ci left: 2.810249e-03	ci right 3.039631e-03	k: 2514	n:860000
Cons ci ratio: 2.612990e-01	ci left: 2.274737e-04	ci right 2.968956e-04	k: 224	n:860000
KS ci ratio: 1.450689e-03	ci left: 8.939794e-01	ci right 8.952784e-01	k: 769382	n:860000
GBF1   860000 perm   557 sec   (1544 perm/sec)   p_kst 8.946302e-01   p_cons 2.604651e-04   p_joint 2.923256e-03

Joint ci ratio: 7.763591e-02	ci left: 2.808377e-03	ci right 3.036332e-03	k: 2541	n:870000
Cons ci ratio: 2.590066e-01	ci left: 2.291570e-04	ci right 2.983798e-04	k: 228	n:870000
KS ci ratio: 1.441979e-03	ci left: 8.940289e-01	ci right 8.953202e-01	k: 778368	n:870000
GBF1   870000 perm   567 sec   (1534 perm/sec)   p_kst 8.946759e-01   p_cons 2.620690e-04   p_joint 2.920690e-03

Joint ci ratio: 7.725712e-02	ci left: 2.804322e-03	ci right 3.030787e-03	k: 2566	n:880000
Cons ci ratio: 2.590070e-01	ci left: 2.265529e-04	ci right 2.949892e-04	k: 228	n:880000
KS ci ratio: 1.433717e-03	ci left: 8.940386e-01	ci right 8.953224e-01	k: 787320	n:880000
GBF1   880000 perm   577 sec   (1525 perm/sec)   p_kst 8.946818e-01   p_cons 2.590909e-04   p_joint 2.915909e-03

Joint ci ratio: 7.796208e-02	ci left: 2.722126e-03	ci right 2.944050e-03	k: 2520	n:890000
Cons ci ratio: 2.584436e-01	ci left: 2.250581e-04	ci right 2.928710e-04	k: 229	n:890000
KS ci ratio: 1.425859e-03	ci left: 8.940132e-01	ci right 8.952899e-01	k: 796241	n:890000
GBF1   890000 perm   588 sec   (1515 perm/sec)   p_kst 8.946528e-01   p_cons 2.573034e-04   p_joint 2.831461e-03

Joint ci ratio: 7.765502e-02	ci left: 2.713670e-03	ci right 2.933994e-03	k: 2540	n:900000
Cons ci ratio: 2.573273e-01	ci left: 2.246360e-04	ci right 2.919825e-04	k: 231	n:900000
KS ci ratio: 1.418045e-03	ci left: 8.939994e-01	ci right 8.952691e-01	k: 805172	n:900000
GBF1   900000 perm   598 sec   (1505 perm/sec)   p_kst 8.946356e-01   p_cons 2.566667e-04   p_joint 2.822222e-03

Joint ci ratio: 7.664941e-02	ci left: 2.756058e-03	ci right 2.976796e-03	k: 2607	n:910000
Cons ci ratio: 2.551370e-01	ci left: 2.262808e-04	ci right 2.934511e-04	k: 235	n:910000
KS ci ratio: 1.410087e-03	ci left: 8.940224e-01	ci right 8.952850e-01	k: 814136	n:910000
GBF1   910000 perm   609 sec   (1495 perm/sec)   p_kst 8.946549e-01   p_cons 2.582418e-04   p_joint 2.864835e-03

Joint ci ratio: 7.631388e-02	ci left: 2.750622e-03	ci right 2.969918e-03	k: 2630	n:920000
Cons ci ratio: 2.535306e-01	ci left: 2.268743e-04	ci right 2.937297e-04	k: 238	n:920000
KS ci ratio: 1.402407e-03	ci left: 8.940252e-01	ci right 8.952810e-01	k: 823082	n:920000
GBF1   920000 perm   619 sec   (1486 perm/sec)   p_kst 8.946543e-01   p_cons 2.586957e-04   p_joint 2.858696e-03

Joint ci ratio: 7.593968e-02	ci left: 2.748470e-03	ci right 2.966473e-03	k: 2656	n:930000
Cons ci ratio: 2.519542e-01	ci left: 2.274563e-04	ci right 2.940010e-04	k: 241	n:930000
KS ci ratio: 1.394931e-03	ci left: 8.940173e-01	ci right 8.952663e-01	k: 832018	n:930000
GBF1   930000 perm   630 sec   (1476 perm/sec)   p_kst 8.946430e-01   p_cons 2.591398e-04   p_joint 2.855914e-03

Joint ci ratio: 7.562750e-02	ci left: 2.742191e-03	ci right 2.958762e-03	k: 2678	n:940000
Cons ci ratio: 2.493907e-01	ci left: 2.300216e-04	ci right 2.965259e-04	k: 246	n:940000
KS ci ratio: 1.387643e-03	ci left: 8.939999e-01	ci right 8.952424e-01	k: 840945	n:940000
GBF1   940000 perm   641 sec   (1467 perm/sec)   p_kst 8.946223e-01   p_cons 2.617021e-04   p_joint 2.848936e-03

Joint ci ratio: 7.219601e-02	ci left: 2.981968e-03	ci right 3.206342e-03	k: 2938	n:950000
Cons ci ratio: 2.473954e-01	ci left: 2.315488e-04	ci right 2.978766e-04	k: 250	n:950000
KS ci ratio: 1.380191e-03	ci left: 8.940209e-01	ci right 8.952567e-01	k: 849908	n:950000
GBF1   950000 perm   651 sec   (1458 perm/sec)   p_kst 8.946400e-01   p_cons 2.631579e-04   p_joint 3.092632e-03

Joint ci ratio: 7.181824e-02	ci left: 2.982616e-03	ci right 3.205816e-03	k: 2969	n:960000
Cons ci ratio: 2.473957e-01	ci left: 2.291368e-04	ci right 2.947738e-04	k: 250	n:960000
KS ci ratio: 1.372683e-03	ci left: 8.940655e-01	ci right 8.952946e-01	k: 858894	n:960000
GBF1   960000 perm   662 sec   (1449 perm/sec)   p_kst 8.946812e-01   p_cons 2.604167e-04   p_joint 3.092708e-03

Joint ci ratio: 7.138671e-02	ci left: 2.988316e-03	ci right 3.210543e-03	k: 3005	n:970000
Cons ci ratio: 2.459303e-01	ci left: 2.296762e-04	ci right 2.950184e-04	k: 253	n:970000
KS ci ratio: 1.365700e-03	ci left: 8.940534e-01	ci right 8.952762e-01	k: 867826	n:970000
GBF1   970000 perm   674 sec   (1440 perm/sec)   p_kst 8.946660e-01   p_cons 2.608247e-04   p_joint 3.097938e-03

Joint ci ratio: 7.112724e-02	ci left: 2.979872e-03	ci right 3.200632e-03	k: 3027	n:980000
Cons ci ratio: 2.454479e-01	ci left: 2.282901e-04	ci right 2.930912e-04	k: 254	n:980000
KS ci ratio: 1.358439e-03	ci left: 8.940947e-01	ci right 8.953111e-01	k: 876810	n:980000
GBF1   980000 perm   685 sec   (1431 perm/sec)   p_kst 8.947041e-01   p_cons 2.591837e-04   p_joint 3.088776e-03

Joint ci ratio: 7.266072e-02	ci left: 2.824779e-03	ci right 3.038752e-03	k: 2901	n:990000
Cons ci ratio: 2.440166e-01	ci left: 2.288287e-04	ci right 2.933464e-04	k: 257	n:990000
KS ci ratio: 1.351605e-03	ci left: 8.940917e-01	ci right 8.953020e-01	k: 885751	n:990000
GBF1   990000 perm   696 sec   (1422 perm/sec)   p_kst 8.946980e-01   p_cons 2.595960e-04   p_joint 2.930303e-03

Joint ci ratio: 7.233751e-02	ci left: 2.822060e-03	ci right 3.034836e-03	k: 2927	n:1000000
Cons ci ratio: 2.426101e-01	ci left: 2.293575e-04	ci right 2.935955e-04	k: 260	n:1000000
KS ci ratio: 1.344494e-03	ci left: 8.941419e-01	ci right 8.953458e-01	k: 894745	n:1000000
GBF1   1000000 perm   707 sec   (1414 perm/sec)   p_kst 8.947450e-01   p_cons 2.600000e-04   p_joint 2.927000e-03

Joint ci ratio: 7.192098e-02	ci left: 2.827175e-03	ci right 3.039058e-03	k: 2961	n:1010000
Cons ci ratio: 2.407720e-01	ci left: 2.308072e-04	ci right 2.948884e-04	k: 264	n:1010000
KS ci ratio: 1.337804e-03	ci left: 8.941474e-01	ci right 8.953454e-01	k: 903695	n:1010000
GBF1   1010000 perm   719 sec   (1405 perm/sec)   p_kst 8.947475e-01   p_cons 2.613861e-04   p_joint 2.931683e-03

Joint ci ratio: 7.205632e-02	ci left: 2.788866e-03	ci right 2.998287e-03	k: 2950	n:1020000
Cons ci ratio: 2.389750e-01	ci left: 2.322303e-04	ci right 2.961541e-04	k: 268	n:1020000
KS ci ratio: 1.331129e-03	ci left: 8.941646e-01	ci right 8.953566e-01	k: 912657	n:1020000
GBF1   1020000 perm   730 sec   (1396 perm/sec)   p_kst 8.947618e-01   p_cons 2.627451e-04   p_joint 2.892157e-03

Joint ci ratio: 7.159651e-02	ci left: 2.798020e-03	ci right 3.006733e-03	k: 2988	n:1030000
Cons ci ratio: 2.385322e-01	ci left: 2.308884e-04	ci right 2.943077e-04	k: 269	n:1030000
KS ci ratio: 1.324861e-03	ci left: 8.941378e-01	ci right 8.953241e-01	k: 921574	n:1030000
GBF1   1030000 perm   742 sec   (1388 perm/sec)   p_kst 8.947320e-01   p_cons 2.611650e-04   p_joint 2.900971e-03

Joint ci ratio: 7.225504e-02	ci left: 2.720123e-03	ci right 2.924969e-03	k: 2934	n:1040000
Cons ci ratio: 2.380919e-01	ci left: 2.295724e-04	ci right 2.924967e-04	k: 270	n:1040000
KS ci ratio: 1.318128e-03	ci left: 8.941904e-01	ci right 8.953708e-01	k: 930573	n:1040000
GBF1   1040000 perm   754 sec   (1380 perm/sec)   p_kst 8.947817e-01   p_cons 2.596154e-04   p_joint 2.821154e-03

Joint ci ratio: 7.187635e-02	ci left: 2.723209e-03	ci right 2.927168e-03	k: 2965	n:1050000
Cons ci ratio: 2.367848e-01	ci left: 2.300732e-04	ci right 2.927378e-04	k: 273	n:1050000
KS ci ratio: 1.311715e-03	ci left: 8.942106e-01	ci right 8.953853e-01	k: 939539	n:1050000
GBF1   1050000 perm   765 sec   (1372 perm/sec)   p_kst 8.947990e-01   p_cons 2.600000e-04   p_joint 2.823810e-03

Joint ci ratio: 7.161147e-02	ci left: 2.717900e-03	ci right 2.920680e-03	k: 2987	n:1060000
Cons ci ratio: 2.359254e-01	ci left: 2.296778e-04	ci right 2.919744e-04	k: 275	n:1060000
KS ci ratio: 1.305415e-03	ci left: 8.942276e-01	ci right 8.953966e-01	k: 948502	n:1060000
GBF1   1060000 perm   777 sec   (1364 perm/sec)   p_kst 8.948132e-01   p_cons 2.594340e-04   p_joint 2.817925e-03

Joint ci ratio: 7.119548e-02	ci left: 2.724626e-03	ci right 2.926678e-03	k: 3022	n:1070000
Cons ci ratio: 2.346536e-01	ci left: 2.301697e-04	ci right 2.922144e-04	k: 278	n:1070000
KS ci ratio: 1.299508e-03	ci left: 8.942003e-01	ci right 8.953640e-01	k: 957418	n:1070000
GBF1   1070000 perm   789 sec   (1356 perm/sec)   p_kst 8.947832e-01   p_cons 2.598131e-04   p_joint 2.824299e-03

Joint ci ratio: 7.080988e-02	ci left: 2.729411e-03	ci right 2.930677e-03	k: 3055	n:1080000
Cons ci ratio: 2.325785e-01	ci left: 2.323973e-04	ci right 2.944088e-04	k: 283	n:1080000
KS ci ratio: 1.293279e-03	ci left: 8.942319e-01	ci right 8.953900e-01	k: 966397	n:1080000
GBF1   1080000 perm   801 sec   (1349 perm/sec)   p_kst 8.948120e-01   p_cons 2.620370e-04   p_joint 2.828704e-03

Joint ci ratio: 7.048771e-02	ci left: 2.729605e-03	ci right 2.929932e-03	k: 3083	n:1090000
Cons ci ratio: 2.313597e-01	ci left: 2.328575e-04	ci right 2.946197e-04	k: 286	n:1090000
KS ci ratio: 1.287529e-03	ci left: 8.942060e-01	ci right 8.953589e-01	k: 975314	n:1090000
GBF1   1090000 perm   813 sec   (1341 perm/sec)   p_kst 8.947835e-01   p_cons 2.623853e-04   p_joint 2.828440e-03

Joint ci ratio: 7.024918e-02	ci left: 2.723545e-03	ci right 2.922723e-03	k: 3104	n:1100000
Cons ci ratio: 2.305578e-01	ci left: 2.324536e-04	ci right 2.938646e-04	k: 288	n:1100000
KS ci ratio: 1.281259e-03	ci left: 8.942680e-01	ci right 8.954154e-01	k: 984327	n:1100000
GBF1   1100000 perm   825 sec   (1334 perm/sec)   p_kst 8.948427e-01   p_cons 2.618182e-04   p_joint 2.821818e-03

Joint ci ratio: 7.001305e-02	ci left: 2.717596e-03	ci right 2.915643e-03	k: 3125	n:1110000
Cons ci ratio: 2.301602e-01	ci left: 2.312083e-04	ci right 2.921700e-04	k: 289	n:1110000
KS ci ratio: 1.275899e-03	ci left: 8.942079e-01	ci right 8.953504e-01	k: 993206	n:1110000
GBF1   1110000 perm   837 sec   (1326 perm/sec)   p_kst 8.947802e-01   p_cons 2.603604e-04   p_joint 2.815315e-03

Joint ci ratio: 6.848208e-02	ci left: 2.817049e-03	ci right 3.017678e-03	k: 3266	n:1120000
Cons ci ratio: 2.282011e-01	ci left: 2.333520e-04	ci right 2.942814e-04	k: 294	n:1120000
KS ci ratio: 1.270026e-03	ci left: 8.942348e-01	ci right 8.953721e-01	k: 1002181	n:1120000
GBF1   1120000 perm   849 sec   (1319 perm/sec)   p_kst 8.948045e-01   p_cons 2.625000e-04   p_joint 2.916071e-03

Joint ci ratio: 6.591224e-02	ci left: 3.017484e-03	ci right 3.224014e-03	k: 3525	n:1130000
Cons ci ratio: 2.266694e-01	ci left: 2.346251e-04	ci right 2.954183e-04	k: 298	n:1130000
KS ci ratio: 1.264371e-03	ci left: 8.942408e-01	ci right 8.953731e-01	k: 1011133	n:1130000
GBF1   1130000 perm   862 sec   (1311 perm/sec)   p_kst 8.948080e-01   p_cons 2.637168e-04   p_joint 3.119469e-03

Joint ci ratio: 6.279212e-02	ci left: 3.300014e-03	ci right 3.514802e-03	k: 3883	n:1140000
Cons ci ratio: 2.247973e-01	ci left: 2.367050e-04	ci right 2.974604e-04	k: 303	n:1140000
KS ci ratio: 1.258626e-03	ci left: 8.942714e-01	ci right 8.953985e-01	k: 1020113	n:1140000
GBF1   1140000 perm   874 sec   (1304 perm/sec)   p_kst 8.948360e-01   p_cons 2.657895e-04   p_joint 3.406140e-03

Joint ci ratio: 6.243918e-02	ci left: 3.308980e-03	ci right 3.523098e-03	k: 3927	n:1150000
Cons ci ratio: 2.240616e-01	ci left: 2.362881e-04	ci right 2.967105e-04	k: 305	n:1150000
KS ci ratio: 1.253219e-03	ci left: 8.942622e-01	ci right 8.953845e-01	k: 1029048	n:1150000
GBF1   1150000 perm   887 sec   (1297 perm/sec)   p_kst 8.948243e-01   p_cons 2.652174e-04   p_joint 3.414783e-03

Joint ci ratio: 6.223377e-02	ci left: 3.302519e-03	ci right 3.515490e-03	k: 3953	n:1160000
Cons ci ratio: 2.226112e-01	ci left: 2.375065e-04	ci right 2.977935e-04	k: 309	n:1160000
KS ci ratio: 1.247629e-03	ci left: 8.942912e-01	ci right 8.954085e-01	k: 1038027	n:1160000
GBF1   1160000 perm   899 sec   (1290 perm/sec)   p_kst 8.948509e-01   p_cons 2.663793e-04   p_joint 3.407759e-03

Joint ci ratio: 6.202256e-02	ci left: 3.297010e-03	ci right 3.508879e-03	k: 3980	n:1170000
Cons ci ratio: 2.215418e-01	ci left: 2.378980e-04	ci right 2.979548e-04	k: 312	n:1170000
KS ci ratio: 1.242334e-03	ci left: 8.942863e-01	ci right 8.953989e-01	k: 1046967	n:1170000
GBF1   1170000 perm   912 sec   (1283 perm/sec)   p_kst 8.948436e-01   p_cons 2.666667e-04   p_joint 3.401709e-03

Joint ci ratio: 6.171314e-02	ci left: 3.302444e-03	ci right 3.513565e-03	k: 4020	n:1180000
Cons ci ratio: 2.201395e-01	ci left: 2.390843e-04	ci right 2.990067e-04	k: 316	n:1180000
KS ci ratio: 1.237050e-03	ci left: 8.942900e-01	ci right 8.953978e-01	k: 1055917	n:1180000
GBF1   1180000 perm   925 sec   (1276 perm/sec)   p_kst 8.948449e-01   p_cons 2.677966e-04   p_joint 3.406780e-03

Joint ci ratio: 6.257076e-02	ci left: 3.184513e-03	ci right 3.391026e-03	k: 3911	n:1190000
Cons ci ratio: 2.184234e-01	ci left: 2.410461e-04	ci right 3.009261e-04	k: 321	n:1190000
KS ci ratio: 1.231767e-03	ci left: 8.943038e-01	ci right 8.954069e-01	k: 1064879	n:1190000
GBF1   1190000 perm   938 sec   (1269 perm/sec)   p_kst 8.948563e-01   p_cons 2.697479e-04   p_joint 3.286555e-03

Joint ci ratio: 6.230058e-02	ci left: 3.185866e-03	ci right 3.391543e-03	k: 3945	n:1200000
Cons ci ratio: 2.177483e-01	ci left: 2.406130e-04	ci right 3.001760e-04	k: 323	n:1200000
KS ci ratio: 1.226703e-03	ci left: 8.942940e-01	ci right 8.953925e-01	k: 1073813	n:1200000
GBF1   1200000 perm   951 sec   (1262 perm/sec)   p_kst 8.948442e-01   p_cons 2.691667e-04   p_joint 3.287500e-03

Joint ci ratio: 6.130410e-02	ci left: 3.264505e-03	ci right 3.471768e-03	k: 4074	n:1210000
Cons ci ratio: 2.170794e-01	ci left: 2.401874e-04	ci right 2.994379e-04	k: 325	n:1210000
KS ci ratio: 1.221610e-03	ci left: 8.942984e-01	ci right 8.953923e-01	k: 1082764	n:1210000
GBF1   1210000 perm   964 sec   (1255 perm/sec)   p_kst 8.948463e-01   p_cons 2.685950e-04   p_joint 3.366942e-03

Joint ci ratio: 6.107231e-02	ci left: 3.262767e-03	ci right 3.469110e-03	k: 4105	n:1220000
Cons ci ratio: 2.164166e-01	ci left: 2.397690e-04	ci right 2.987117e-04	k: 327	n:1220000
KS ci ratio: 1.216330e-03	ci left: 8.943413e-01	ci right 8.954306e-01	k: 1091762	n:1220000
GBF1   1220000 perm   977 sec   (1249 perm/sec)   p_kst 8.948869e-01   p_cons 2.680328e-04   p_joint 3.364754e-03

Joint ci ratio: 6.080627e-02	ci left: 3.265063e-03	ci right 3.470620e-03	k: 4141	n:1230000
Cons ci ratio: 2.164168e-01	ci left: 2.378196e-04	ci right 2.962832e-04	k: 327	n:1230000
KS ci ratio: 1.211595e-03	ci left: 8.943094e-01	ci right 8.953944e-01	k: 1100669	n:1230000
GBF1   1230000 perm   990 sec   (1242 perm/sec)   p_kst 8.948528e-01   p_cons 2.658537e-04   p_joint 3.366667e-03

Joint ci ratio: 6.096235e-02	ci left: 3.222052e-03	ci right 3.425440e-03	k: 4120	n:1240000
Cons ci ratio: 2.160878e-01	ci left: 2.366645e-04	ci right 2.947439e-04	k: 328	n:1240000
KS ci ratio: 1.206537e-03	ci left: 8.943371e-01	ci right 8.954175e-01	k: 1109649	n:1240000
GBF1   1240000 perm   1004 sec   (1235 perm/sec)   p_kst 8.948782e-01   p_cons 2.645161e-04   p_joint 3.322581e-03

Joint ci ratio: 6.061733e-02	ci left: 3.233305e-03	ci right 3.436207e-03	k: 4167	n:1250000
Cons ci ratio: 2.147860e-01	ci left: 2.377985e-04	ci right 2.957584e-04	k: 332	n:1250000
KS ci ratio: 1.201526e-03	ci left: 8.943667e-01	ci right 8.954427e-01	k: 1118632	n:1250000
GBF1   1250000 perm   1017 sec   (1229 perm/sec)   p_kst 8.949056e-01   p_cons 2.656000e-04   p_joint 3.333600e-03

Joint ci ratio: 6.041487e-02	ci left: 3.229530e-03	ci right 3.431494e-03	k: 4195	n:1260000
Cons ci ratio: 2.138249e-01	ci left: 2.381644e-04	ci right 2.959196e-04	k: 335	n:1260000
KS ci ratio: 1.196850e-03	ci left: 8.943529e-01	ci right 8.954247e-01	k: 1127561	n:1260000
GBF1   1260000 perm   1031 sec   (1222 perm/sec)   p_kst 8.948897e-01   p_cons 2.658730e-04   p_joint 3.329365e-03

Joint ci ratio: 6.017869e-02	ci left: 3.229693e-03	ci right 3.430851e-03	k: 4228	n:1270000
Cons ci ratio: 2.131914e-01	ci left: 2.377797e-04	ci right 2.952484e-04	k: 337	n:1270000
KS ci ratio: 1.191983e-03	ci left: 8.943780e-01	ci right 8.954454e-01	k: 1136539	n:1270000
GBF1   1270000 perm   1044 sec   (1216 perm/sec)   p_kst 8.949126e-01   p_cons 2.653543e-04   p_joint 3.329134e-03

Joint ci ratio: 5.993822e-02	ci left: 3.230624e-03	ci right 3.431008e-03	k: 4262	n:1280000
Cons ci ratio: 2.125635e-01	ci left: 2.374012e-04	ci right 2.945875e-04	k: 339	n:1280000
KS ci ratio: 1.187210e-03	ci left: 8.943972e-01	ci right 8.954604e-01	k: 1145510	n:1280000
GBF1   1280000 perm   1058 sec   (1210 perm/sec)   p_kst 8.949297e-01   p_cons 2.648437e-04   p_joint 3.329688e-03

Joint ci ratio: 5.970060e-02	ci left: 3.231543e-03	ci right 3.431162e-03	k: 4296	n:1290000
Cons ci ratio: 2.113240e-01	ci left: 2.384971e-04	ci right 2.955690e-04	k: 343	n:1290000
KS ci ratio: 1.182455e-03	ci left: 8.944223e-01	ci right 8.954813e-01	k: 1154489	n:1290000
GBF1   1290000 perm   1072 sec   (1204 perm/sec)   p_kst 8.949527e-01   p_cons 2.658915e-04   p_joint 3.330233e-03

Joint ci ratio: 5.948646e-02	ci left: 3.230176e-03	ci right 3.428970e-03	k: 4327	n:1300000
Cons ci ratio: 2.107124e-01	ci left: 2.381197e-04	ci right 2.949150e-04	k: 345	n:1300000
KS ci ratio: 1.178040e-03	ci left: 8.944016e-01	ci right 8.954566e-01	k: 1163409	n:1300000
GBF1   1300000 perm   1086 sec   (1197 perm/sec)   p_kst 8.949300e-01   p_cons 2.653846e-04   p_joint 3.328462e-03

Joint ci ratio: 5.988416e-02	ci left: 3.162653e-03	ci right 3.358638e-03	k: 4270	n:1310000
Cons ci ratio: 2.101061e-01	ci left: 2.377482e-04	ci right 2.942708e-04	k: 347	n:1310000
KS ci ratio: 1.173322e-03	ci left: 8.944378e-01	ci right 8.954887e-01	k: 1172403	n:1310000
GBF1   1310000 perm   1099 sec   (1192 perm/sec)   p_kst 8.949641e-01   p_cons 2.648855e-04   p_joint 3.259542e-03

Joint ci ratio: 6.054261e-02	ci left: 3.070041e-03	ci right 3.262452e-03	k: 4178	n:1320000
Cons ci ratio: 2.095050e-01	ci left: 2.373827e-04	ci right 2.936361e-04	k: 349	n:1320000
KS ci ratio: 1.168981e-03	ci left: 8.944219e-01	ci right 8.954688e-01	k: 1181329	n:1320000
GBF1   1320000 perm   1113 sec   (1186 perm/sec)   p_kst 8.949462e-01   p_cons 2.643939e-04   p_joint 3.165152e-03

Joint ci ratio: 6.072582e-02	ci left: 3.028444e-03	ci right 3.218843e-03	k: 4153	n:1330000
Cons ci ratio: 2.092064e-01	ci left: 2.363103e-04	ci right 2.922196e-04	k: 350	n:1330000
KS ci ratio: 1.164673e-03	ci left: 8.944085e-01	ci right 8.954515e-01	k: 1190258	n:1330000
GBF1   1330000 perm   1127 sec   (1180 perm/sec)   p_kst 8.949308e-01   p_cons 2.631579e-04   p_joint 3.122556e-03

Joint ci ratio: 6.045704e-02	ci left: 3.033038e-03	ci right 3.222851e-03	k: 4190	n:1340000
Cons ci ratio: 2.089092e-01	ci left: 2.352540e-04	ci right 2.908241e-04	k: 351	n:1340000
KS ci ratio: 1.160284e-03	ci left: 8.944162e-01	ci right 8.954553e-01	k: 1199215	n:1340000
GBF1   1340000 perm   1142 sec   (1174 perm/sec)   p_kst 8.949366e-01   p_cons 2.619403e-04   p_joint 3.126866e-03

Joint ci ratio: 6.024184e-02	ci left: 3.032458e-03	ci right 3.221536e-03	k: 4220	n:1350000
Cons ci ratio: 2.089094e-01	ci left: 2.335113e-04	ci right 2.886699e-04	k: 351	n:1350000
KS ci ratio: 1.155848e-03	ci left: 8.944394e-01	ci right 8.954745e-01	k: 1208193	n:1350000
GBF1   1350000 perm   1156 sec   (1168 perm/sec)   p_kst 8.949578e-01   p_cons 2.600000e-04   p_joint 3.125926e-03

Joint ci ratio: 6.002892e-02	ci left: 3.031887e-03	ci right 3.220239e-03	k: 4250	n:1360000
Cons ci ratio: 2.083185e-01	ci left: 2.331881e-04	ci right 2.880947e-04	k: 353	n:1360000
KS ci ratio: 1.151652e-03	ci left: 8.944313e-01	ci right 8.954626e-01	k: 1217129	n:1360000
GBF1   1360000 perm   1170 sec   (1162 perm/sec)   p_kst 8.949478e-01   p_cons 2.595588e-04   p_joint 3.125000e-03

Joint ci ratio: 5.980424e-02	ci left: 3.032764e-03	ci right 3.220441e-03	k: 4282	n:1370000
Cons ci ratio: 2.080250e-01	ci left: 2.321778e-04	ci right 2.867597e-04	k: 354	n:1370000
KS ci ratio: 1.147376e-03	ci left: 8.944438e-01	ci right 8.954713e-01	k: 1226093	n:1370000
GBF1   1370000 perm   1184 sec   (1157 perm/sec)   p_kst 8.949584e-01   p_cons 2.583942e-04   p_joint 3.125547e-03

Joint ci ratio: 5.957513e-02	ci left: 3.034344e-03	ci right 3.221374e-03	k: 4315	n:1380000
Cons ci ratio: 2.074415e-01	ci left: 2.318693e-04	ci right 2.862063e-04	k: 356	n:1380000
KS ci ratio: 1.143152e-03	ci left: 8.944554e-01	ci right 8.954792e-01	k: 1235056	n:1380000
GBF1   1380000 perm   1199 sec   (1151 perm/sec)   p_kst 8.949681e-01   p_cons 2.579710e-04   p_joint 3.126812e-03

Joint ci ratio: 5.936233e-02	ci left: 3.034485e-03	ci right 3.220832e-03	k: 4346	n:1390000
Cons ci ratio: 2.071517e-01	ci left: 2.308832e-04	ci right 2.849040e-04	k: 357	n:1390000
KS ci ratio: 1.139075e-03	ci left: 8.944503e-01	ci right 8.954704e-01	k: 1243996	n:1390000
GBF1   1390000 perm   1214 sec   (1145 perm/sec)   p_kst 8.949612e-01   p_cons 2.568345e-04   p_joint 3.126619e-03

Joint ci ratio: 5.913147e-02	ci left: 3.036736e-03	ci right 3.222472e-03	k: 4380	n:1400000
Cons ci ratio: 2.062891e-01	ci left: 2.312660e-04	ci right 2.851226e-04	k: 360	n:1400000
KS ci ratio: 1.135071e-03	ci left: 8.944402e-01	ci right 8.954567e-01	k: 1252929	n:1400000
GBF1   1400000 perm   1228 sec   (1140 perm/sec)   p_kst 8.949493e-01   p_cons 2.571429e-04   p_joint 3.128571e-03

Joint ci ratio: 6.026734e-02	ci left: 2.901315e-03	ci right 3.082296e-03	k: 4217	n:1410000
Cons ci ratio: 2.054372e-01	ci left: 2.316438e-04	ci right 2.853376e-04	k: 363	n:1410000
KS ci ratio: 1.131046e-03	ci left: 8.944410e-01	ci right 8.954539e-01	k: 1261877	n:1410000
GBF1   1410000 perm   1243 sec   (1134 perm/sec)   p_kst 8.949482e-01   p_cons 2.574468e-04   p_joint 2.990780e-03

Joint ci ratio: 6.029666e-02	ci left: 2.878108e-03	ci right 3.057731e-03	k: 4213	n:1420000
Cons ci ratio: 2.043176e-01	ci left: 2.326849e-04	ci right 2.862894e-04	k: 367	n:1420000
KS ci ratio: 1.127121e-03	ci left: 8.944318e-01	ci right 8.954412e-01	k: 1270811	n:1420000
GBF1   1420000 perm   1258 sec   (1129 perm/sec)   p_kst 8.949373e-01   p_cons 2.584507e-04   p_joint 2.966901e-03

Joint ci ratio: 6.011870e-02	ci left: 2.875201e-03	ci right 3.054094e-03	k: 4238	n:1430000
Cons ci ratio: 2.040406e-01	ci left: 2.317213e-04	ci right 2.850224e-04	k: 368	n:1430000
KS ci ratio: 1.123334e-03	ci left: 8.944067e-01	ci right 8.954127e-01	k: 1279722	n:1430000
GBF1   1430000 perm   1273 sec   (1123 perm/sec)   p_kst 8.949105e-01   p_cons 2.573427e-04   p_joint 2.963636e-03

Joint ci ratio: 5.992116e-02	ci left: 2.874387e-03	ci right 3.052622e-03	k: 4266	n:1440000
Cons ci ratio: 2.034900e-01	ci left: 2.314301e-04	ci right 2.845028e-04	k: 370	n:1440000
KS ci ratio: 1.119456e-03	ci left: 8.944035e-01	ci right 8.954060e-01	k: 1288664	n:1440000
GBF1   1440000 perm   1288 sec   (1118 perm/sec)   p_kst 8.949056e-01   p_cons 2.569444e-04   p_joint 2.962500e-03

Joint ci ratio: 5.971161e-02	ci left: 2.874944e-03	ci right 3.052568e-03	k: 4296	n:1450000
Cons ci ratio: 2.029437e-01	ci left: 2.311432e-04	ci right 2.839901e-04	k: 372	n:1450000
KS ci ratio: 1.115618e-03	ci left: 8.944004e-01	ci right 8.953994e-01	k: 1297606	n:1450000
GBF1   1450000 perm   1303 sec   (1113 perm/sec)   p_kst 8.949007e-01   p_cons 2.565517e-04   p_joint 2.962759e-03

Joint ci ratio: 5.946979e-02	ci left: 2.878868e-03	ci right 3.055990e-03	k: 4331	n:1460000
Cons ci ratio: 2.024019e-01	ci left: 2.308603e-04	ci right 2.834842e-04	k: 374	n:1460000
KS ci ratio: 1.111855e-03	ci left: 8.943911e-01	ci right 8.953868e-01	k: 1306539	n:1460000
GBF1   1460000 perm   1318 sec   (1108 perm/sec)   p_kst 8.948897e-01   p_cons 2.561644e-04   p_joint 2.966438e-03

Joint ci ratio: 5.925812e-02	ci left: 2.880059e-03	ci right 3.056602e-03	k: 4362	n:1470000
Cons ci ratio: 2.018643e-01	ci left: 2.305816e-04	ci right 2.829851e-04	k: 376	n:1470000
KS ci ratio: 1.108071e-03	ci left: 8.943922e-01	ci right 8.953845e-01	k: 1315487	n:1470000
GBF1   1470000 perm   1333 sec   (1102 perm/sec)   p_kst 8.948891e-01   p_cons 2.557823e-04   p_joint 2.967347e-03

Joint ci ratio: 5.928598e-02	ci left: 2.857936e-03	ci right 3.033208e-03	k: 4358	n:1480000
Cons ci ratio: 2.010659e-01	ci left: 2.309483e-04	ci right 2.832022e-04	k: 379	n:1480000
KS ci ratio: 1.104193e-03	ci left: 8.944156e-01	ci right 8.954044e-01	k: 1324468	n:1480000
GBF1   1480000 perm   1349 sec   (1097 perm/sec)   p_kst 8.949108e-01   p_cons 2.560811e-04   p_joint 2.944595e-03

Joint ci ratio: 6.001590e-02	ci left: 2.769332e-03	ci right 2.941334e-03	k: 4253	n:1490000
Cons ci ratio: 2.008019e-01	ci left: 2.300357e-04	ci right 2.820064e-04	k: 380	n:1490000
KS ci ratio: 1.100761e-03	ci left: 8.943695e-01	ci right 8.953552e-01	k: 1333346	n:1490000
GBF1   1490000 perm   1364 sec   (1092 perm/sec)   p_kst 8.948631e-01   p_cons 2.550336e-04   p_joint 2.854362e-03

Joint ci ratio: 5.977039e-02	ci left: 2.773854e-03	ci right 2.945408e-03	k: 4288	n:1500000
Cons ci ratio: 2.002770e-01	ci left: 2.297685e-04	ci right 2.815265e-04	k: 382	n:1500000
KS ci ratio: 1.097076e-03	ci left: 8.943727e-01	ci right 8.953551e-01	k: 1342297	n:1500000
GBF1   1500000 perm   1379 sec   (1087 perm/sec)   p_kst 8.948647e-01   p_cons 2.546667e-04   p_joint 2.858667e-03

Joint ci ratio: 5.953478e-02	ci left: 2.777665e-03	ci right 2.948754e-03	k: 4322	n:1510000
Cons ci ratio: 1.997562e-01	ci left: 2.295051e-04	ci right 2.810529e-04	k: 384	n:1510000
KS ci ratio: 1.093552e-03	ci left: 8.943547e-01	ci right 8.953339e-01	k: 1351216	n:1510000
GBF1   1510000 perm   1395 sec   (1083 perm/sec)   p_kst 8.948450e-01   p_cons 2.543046e-04   p_joint 2.862252e-03

Joint ci ratio: 5.928828e-02	ci left: 2.782724e-03	ci right 2.953390e-03	k: 4358	n:1520000
Cons ci ratio: 1.989824e-01	ci left: 2.298703e-04	ci right 2.812759e-04	k: 387	n:1520000
KS ci ratio: 1.090046e-03	ci left: 8.943395e-01	ci right 8.953156e-01	k: 1360139	n:1520000
GBF1   1520000 perm   1410 sec   (1078 perm/sec)   p_kst 8.948283e-01   p_cons 2.546053e-04   p_joint 2.867105e-03

Joint ci ratio: 5.973717e-02	ci left: 2.722682e-03	ci right 2.890974e-03	k: 4293	n:1530000
Cons ci ratio: 1.972111e-01	ci left: 2.327162e-04	ci right 2.842392e-04	k: 394	n:1530000
KS ci ratio: 1.086418e-03	ci left: 8.943514e-01	ci right 8.953242e-01	k: 1369103	n:1530000
GBF1   1530000 perm   1426 sec   (1073 perm/sec)   p_kst 8.948386e-01   p_cons 2.575163e-04   p_joint 2.805882e-03

Joint ci ratio: 5.956408e-02	ci left: 2.720994e-03	ci right 2.888677e-03	k: 4318	n:1540000
Cons ci ratio: 1.959745e-01	ci left: 2.342920e-04	ci right 2.857999e-04	k: 399	n:1540000
KS ci ratio: 1.082834e-03	ci left: 8.943619e-01	ci right 8.953315e-01	k: 1378065	n:1540000
GBF1   1540000 perm   1442 sec   (1068 perm/sec)   p_kst 8.948474e-01   p_cons 2.590909e-04   p_joint 2.803896e-03

Joint ci ratio: 5.940621e-02	ci left: 2.718057e-03	ci right 2.885100e-03	k: 4341	n:1550000
Cons ci ratio: 1.952437e-01	ci left: 2.346211e-04	ci right 2.859861e-04	k: 402	n:1550000
KS ci ratio: 1.079230e-03	ci left: 8.943819e-01	ci right 8.953483e-01	k: 1387042	n:1550000
GBF1   1550000 perm   1457 sec   (1063 perm/sec)   p_kst 8.948658e-01   p_cons 2.593548e-04   p_joint 2.800645e-03

Joint ci ratio: 5.924279e-02	ci left: 2.715790e-03	ci right 2.882219e-03	k: 4365	n:1560000
Cons ci ratio: 1.942818e-01	ci left: 2.355563e-04	ci right 2.868419e-04	k: 406	n:1560000
KS ci ratio: 1.075812e-03	ci left: 8.943753e-01	ci right 8.953386e-01	k: 1395978	n:1560000
GBF1   1560000 perm   1474 sec   (1059 perm/sec)   p_kst 8.948577e-01   p_cons 2.602564e-04   p_joint 2.798077e-03

Joint ci ratio: 5.967663e-02	ci left: 2.658959e-03	ci right 2.823139e-03	k: 4302	n:1570000
Cons ci ratio: 1.940436e-01	ci left: 2.346619e-04	ci right 2.856827e-04	k: 407	n:1570000
KS ci ratio: 1.072546e-03	ci left: 8.943478e-01	ci right 8.953081e-01	k: 1404881	n:1570000
GBF1   1570000 perm   1490 sec   (1054 perm/sec)   p_kst 8.948287e-01   p_cons 2.592357e-04   p_joint 2.740127e-03

Joint ci ratio: 5.944900e-02	ci left: 2.662705e-03	ci right 2.826468e-03	k: 4335	n:1580000
Cons ci ratio: 1.935698e-01	ci left: 2.343811e-04	ci right 2.852018e-04	k: 409	n:1580000
KS ci ratio: 1.069104e-03	ci left: 8.943567e-01	ci right 8.953140e-01	k: 1413841	n:1580000
GBF1   1580000 perm   1506 sec   (1049 perm/sec)   p_kst 8.948361e-01   p_cons 2.588608e-04   p_joint 2.743671e-03

Joint ci ratio: 5.929204e-02	ci left: 2.660209e-03	ci right 2.823372e-03	k: 4358	n:1590000
Cons ci ratio: 1.933343e-01	ci left: 2.335054e-04	ci right 2.840674e-04	k: 410	n:1590000
KS ci ratio: 1.065863e-03	ci left: 8.943359e-01	ci right 8.952903e-01	k: 1422754	n:1590000
GBF1   1590000 perm   1522 sec   (1045 perm/sec)   p_kst 8.948138e-01   p_cons 2.578616e-04   p_joint 2.740881e-03

Joint ci ratio: 5.910926e-02	ci left: 2.660208e-03	ci right 2.822850e-03	k: 4385	n:1600000
Cons ci ratio: 1.930996e-01	ci left: 2.326408e-04	ci right 2.829472e-04	k: 411	n:1600000
KS ci ratio: 1.062446e-03	ci left: 8.943518e-01	ci right 8.953031e-01	k: 1431725	n:1600000
GBF1   1600000 perm   1538 sec   (1040 perm/sec)   p_kst 8.948281e-01   p_cons 2.568750e-04   p_joint 2.740625e-03

Joint ci ratio: 5.894827e-02	ci left: 2.658371e-03	ci right 2.820444e-03	k: 4409	n:1610000
Cons ci ratio: 1.919383e-01	ci left: 2.341517e-04	ci right 2.844448e-04	k: 416	n:1610000
KS ci ratio: 1.059058e-03	ci left: 8.943680e-01	ci right 8.953163e-01	k: 1440697	n:1610000
GBF1   1610000 perm   1554 sec   (1036 perm/sec)   p_kst 8.948429e-01   p_cons 2.583851e-04   p_joint 2.738509e-03

Joint ci ratio: 5.874873e-02	ci left: 2.660208e-03	ci right 2.821825e-03	k: 4439	n:1620000
Cons ci ratio: 1.912516e-01	ci left: 2.344694e-04	ci right 2.846296e-04	k: 419	n:1620000
KS ci ratio: 1.055918e-03	ci left: 8.943457e-01	ci right 8.952912e-01	k: 1449607	n:1620000
GBF1   1620000 perm   1571 sec   (1031 perm/sec)   p_kst 8.948191e-01   p_cons 2.586420e-04   p_joint 2.740123e-03

Joint ci ratio: 5.857750e-02	ci left: 2.659604e-03	ci right 2.820698e-03	k: 4465	n:1630000
Cons ci ratio: 1.903472e-01	ci left: 2.353677e-04	ci right 2.854544e-04	k: 423	n:1630000
KS ci ratio: 1.052815e-03	ci left: 8.943218e-01	ci right 8.952645e-01	k: 1458514	n:1630000
GBF1   1630000 perm   1587 sec   (1027 perm/sec)   p_kst 8.947939e-01   p_cons 2.595092e-04   p_joint 2.739264e-03

Joint ci ratio: 5.840775e-02	ci left: 2.659009e-03	ci right 2.819584e-03	k: 4491	n:1640000
Cons ci ratio: 1.901232e-01	ci left: 2.345132e-04	ci right 2.843526e-04	k: 424	n:1640000
KS ci ratio: 1.049682e-03	ci left: 8.943087e-01	ci right 8.952485e-01	k: 1467438	n:1640000
GBF1   1640000 perm   1604 sec   (1023 perm/sec)   p_kst 8.947793e-01   p_cons 2.585366e-04   p_joint 2.738415e-03

Joint ci ratio: 5.822655e-02	ci left: 2.659616e-03	ci right 2.819713e-03	k: 4519	n:1650000
Cons ci ratio: 1.901234e-01	ci left: 2.330919e-04	ci right 2.826293e-04	k: 424	n:1650000
KS ci ratio: 1.046519e-03	ci left: 8.943060e-01	ci right 8.952430e-01	k: 1476379	n:1650000
GBF1   1650000 perm   1621 sec   (1018 perm/sec)   p_kst 8.947752e-01   p_cons 2.569697e-04   p_joint 2.738788e-03

Joint ci ratio: 5.657533e-02	ci left: 2.802135e-03	ci right 2.965872e-03	k: 4786	n:1660000
Cons ci ratio: 1.890146e-01	ci left: 2.345569e-04	ci right 2.840815e-04	k: 429	n:1660000
KS ci ratio: 1.045443e-03	ci left: 8.939309e-01	ci right 8.948665e-01	k: 1484703	n:1660000
GBF1   1660000 perm   1638 sec   (1014 perm/sec)   p_kst 8.943994e-01   p_cons 2.584337e-04   p_joint 2.883133e-03

Joint ci ratio: 5.634025e-02	ci left: 2.808970e-03	ci right 2.972402e-03	k: 4826	n:1670000
Cons ci ratio: 1.879251e-01	ci left: 2.360051e-04	ci right 2.855155e-04	k: 434	n:1670000
KS ci ratio: 1.042152e-03	ci left: 8.939605e-01	ci right 8.948932e-01	k: 1493694	n:1670000
GBF1   1670000 perm   1655 sec   (1009 perm/sec)   p_kst 8.944275e-01   p_cons 2.598802e-04   p_joint 2.889820e-03

Joint ci ratio: 5.616016e-02	ci left: 2.810443e-03	ci right 2.973421e-03	k: 4857	n:1680000
Cons ci ratio: 1.868541e-01	ci left: 2.374369e-04	ci right 2.869317e-04	k: 439	n:1680000
KS ci ratio: 1.039027e-03	ci left: 8.939653e-01	ci right 8.948952e-01	k: 1502644	n:1680000
GBF1   1680000 perm   1671 sec   (1005 perm/sec)   p_kst 8.944310e-01   p_cons 2.613095e-04   p_joint 2.891071e-03

Joint ci ratio: 5.598180e-02	ci left: 2.811900e-03	ci right 2.974427e-03	k: 4888	n:1690000
Cons ci ratio: 1.866423e-01	ci left: 2.365960e-04	ci right 2.858532e-04	k: 440	n:1690000
KS ci ratio: 1.036024e-03	ci left: 8.939529e-01	ci right 8.948801e-01	k: 1511565	n:1690000
GBF1   1690000 perm   1689 sec   (1001 perm/sec)   p_kst 8.944172e-01   p_cons 2.603550e-04   p_joint 2.892308e-03

Joint ci ratio: 5.581081e-02	ci left: 2.812759e-03	ci right 2.974824e-03	k: 4918	n:1700000
Cons ci ratio: 1.862205e-01	ci left: 2.363258e-04	ci right 2.854030e-04	k: 442	n:1700000
KS ci ratio: 1.032922e-03	ci left: 8.939636e-01	ci right 8.948880e-01	k: 1520525	n:1700000
GBF1   1700000 perm   1706 sec   (996 perm/sec)   p_kst 8.944265e-01   p_cons 2.600000e-04   p_joint 2.892941e-03

Joint ci ratio: 5.562447e-02	ci left: 2.815340e-03	ci right 2.976994e-03	k: 4951	n:1710000
Cons ci ratio: 1.858016e-01	ci left: 2.360589e-04	ci right 2.849580e-04	k: 444	n:1710000
KS ci ratio: 1.029895e-03	ci left: 8.939654e-01	ci right 8.948871e-01	k: 1529470	n:1710000
GBF1   1710000 perm   1724 sec   (992 perm/sec)   p_kst 8.944269e-01   p_cons 2.596491e-04   p_joint 2.895322e-03

Joint ci ratio: 5.541212e-02	ci left: 2.820758e-03	ci right 2.982085e-03	k: 4989	n:1720000
Cons ci ratio: 1.849720e-01	ci left: 2.369042e-04	ci right 2.857346e-04	k: 448	n:1720000
KS ci ratio: 1.026891e-03	ci left: 8.939677e-01	ci right 8.948868e-01	k: 1538416	n:1720000
GBF1   1720000 perm   1741 sec   (988 perm/sec)   p_kst 8.944279e-01   p_cons 2.604651e-04   p_joint 2.900581e-03

Joint ci ratio: 5.523525e-02	ci left: 2.822695e-03	ci right 2.983601e-03	k: 5021	n:1730000
Cons ci ratio: 1.843571e-01	ci left: 2.371887e-04	ci right 2.858972e-04	k: 451	n:1730000
KS ci ratio: 1.023895e-03	ci left: 8.939735e-01	ci right 8.948899e-01	k: 1547368	n:1730000
GBF1   1730000 perm   1758 sec   (984 perm/sec)   p_kst 8.944324e-01   p_cons 2.606936e-04   p_joint 2.902312e-03

Joint ci ratio: 5.506006e-02	ci left: 2.824610e-03	ci right 2.985098e-03	k: 5053	n:1740000
Cons ci ratio: 1.841536e-01	ci left: 2.363738e-04	ci right 2.848553e-04	k: 452	n:1740000
KS ci ratio: 1.020940e-03	ci left: 8.939764e-01	ci right 8.948901e-01	k: 1556315	n:1740000
GBF1   1740000 perm   1775 sec   (980 perm/sec)   p_kst 8.944339e-01   p_cons 2.597701e-04   p_joint 2.904023e-03

Joint ci ratio: 5.493530e-02	ci left: 2.821431e-03	ci right 2.981364e-03	k: 5076	n:1750000
Cons ci ratio: 1.835468e-01	ci left: 2.366585e-04	ci right 2.850206e-04	k: 455	n:1750000
KS ci ratio: 1.017912e-03	ci left: 8.939975e-01	ci right 8.949086e-01	k: 1565294	n:1750000
GBF1   1750000 perm   1793 sec   (976 perm/sec)   p_kst 8.944537e-01   p_cons 2.600000e-04   p_joint 2.900571e-03

Joint ci ratio: 5.477369e-02	ci left: 2.822212e-03	ci right 2.981704e-03	k: 5106	n:1760000
Cons ci ratio: 1.831457e-01	ci left: 2.363980e-04	ci right 2.845897e-04	k: 457	n:1760000
KS ci ratio: 1.015137e-03	ci left: 8.939763e-01	ci right 8.948849e-01	k: 1574199	n:1760000
GBF1   1760000 perm   1810 sec   (972 perm/sec)   p_kst 8.944313e-01   p_cons 2.596591e-04   p_joint 2.901136e-03

Joint ci ratio: 5.362276e-02	ci left: 2.929438e-03	ci right 3.091404e-03	k: 5327	n:1770000
Cons ci ratio: 1.827471e-01	ci left: 2.361406e-04	ci right 2.841634e-04	k: 459	n:1770000
KS ci ratio: 1.012157e-03	ci left: 8.939978e-01	ci right 8.949037e-01	k: 1583179	n:1770000
GBF1   1770000 perm   1828 sec   (968 perm/sec)   p_kst 8.944514e-01   p_cons 2.593220e-04   p_joint 3.009605e-03

Joint ci ratio: 5.434932e-02	ci left: 2.834833e-03	ci right 2.993758e-03	k: 5186	n:1780000
Cons ci ratio: 1.827473e-01	ci left: 2.348140e-04	ci right 2.825670e-04	k: 459	n:1780000
KS ci ratio: 1.009447e-03	ci left: 8.939735e-01	ci right 8.948769e-01	k: 1592078	n:1780000
GBF1   1780000 perm   1846 sec   (964 perm/sec)   p_kst 8.944258e-01   p_cons 2.578652e-04   p_joint 2.913483e-03

Joint ci ratio: 5.423454e-02	ci left: 2.831119e-03	ci right 2.989490e-03	k: 5208	n:1790000
Cons ci ratio: 1.827474e-01	ci left: 2.335022e-04	ci right 2.809885e-04	k: 459	n:1790000
KS ci ratio: 1.006439e-03	ci left: 8.940093e-01	ci right 8.949101e-01	k: 1601084	n:1790000
GBF1   1790000 perm   1864 sec   (960 perm/sec)   p_kst 8.944603e-01   p_cons 2.564246e-04   p_joint 2.909497e-03

Joint ci ratio: 5.409974e-02	ci left: 2.829640e-03	ci right 2.987522e-03	k: 5234	n:1800000
Cons ci ratio: 1.823514e-01	ci left: 2.332653e-04	ci right 2.805893e-04	k: 461	n:1800000
KS ci ratio: 1.003771e-03	ci left: 8.939857e-01	ci right 8.948841e-01	k: 1609984	n:1800000
GBF1   1800000 perm   1882 sec   (957 perm/sec)   p_kst 8.944356e-01   p_cons 2.561111e-04   p_joint 2.907778e-03

Joint ci ratio: 5.395565e-02	ci left: 2.829267e-03	ci right 2.986695e-03	k: 5262	n:1810000
Cons ci ratio: 1.821545e-01	ci left: 2.325038e-04	ci right 2.796167e-04	k: 462	n:1810000
KS ci ratio: 1.000984e-03	ci left: 8.939890e-01	ci right 8.948849e-01	k: 1618932	n:1810000
GBF1   1810000 perm   1899 sec   (953 perm/sec)   p_kst 8.944376e-01   p_cons 2.552486e-04   p_joint 2.907182e-03

Joint ci ratio: 5.377196e-02	ci left: 2.833235e-03	ci right 2.990331e-03	k: 5298	n:1820000
Cons ci ratio: 1.811787e-01	ci left: 2.338486e-04	ci right 2.809524e-04	k: 467	n:1820000
KS ci ratio: 9.981732e-04	ci left: 8.940011e-01	ci right 8.948944e-01	k: 1627896	n:1820000
GBF1   1820000 perm   1918 sec   (949 perm/sec)   p_kst 8.944484e-01   p_cons 2.565934e-04   p_joint 2.910989e-03

Joint ci ratio: 5.363047e-02	ci left: 2.832848e-03	ci right 2.989496e-03	k: 5326	n:1830000
Cons ci ratio: 1.809855e-01	ci left: 2.330924e-04	ci right 2.799883e-04	k: 468	n:1830000
KS ci ratio: 9.954551e-04	ci left: 8.939998e-01	ci right 8.948907e-01	k: 1636836	n:1830000
GBF1   1830000 perm   1936 sec   (945 perm/sec)   p_kst 8.944459e-01   p_cons 2.557377e-04   p_joint 2.910383e-03

Joint ci ratio: 5.460587e-02	ci left: 2.716656e-03	ci right 2.869698e-03	k: 5138	n:1840000
Cons ci ratio: 1.807930e-01	ci left: 2.323445e-04	ci right 2.790347e-04	k: 469	n:1840000
KS ci ratio: 9.927419e-04	ci left: 8.940019e-01	ci right 8.948904e-01	k: 1645782	n:1840000
GBF1   1840000 perm   1954 sec   (942 perm/sec)   p_kst 8.944467e-01   p_cons 2.548913e-04   p_joint 2.792391e-03

Joint ci ratio: 5.443659e-02	ci left: 2.719033e-03	ci right 2.871719e-03	k: 5170	n:1850000
Cons ci ratio: 1.800284e-01	ci left: 2.331531e-04	ci right 2.797861e-04	k: 473	n:1850000
KS ci ratio: 9.899375e-04	ci left: 8.940256e-01	ci right 8.949116e-01	k: 1654768	n:1850000
GBF1   1850000 perm   1972 sec   (938 perm/sec)   p_kst 8.944692e-01   p_cons 2.556757e-04   p_joint 2.794595e-03

Joint ci ratio: 5.462268e-02	ci left: 2.685853e-03	ci right 2.837207e-03	k: 5135	n:1860000
Cons ci ratio: 1.798389e-01	ci left: 2.324130e-04	ci right 2.788437e-04	k: 474	n:1860000
KS ci ratio: 9.873563e-04	ci left: 8.940108e-01	ci right 8.948944e-01	k: 1663683	n:1860000
GBF1   1860000 perm   1991 sec   (934 perm/sec)   p_kst 8.944532e-01   p_cons 2.548387e-04   p_joint 2.760753e-03

Joint ci ratio: 5.446381e-02	ci left: 2.687314e-03	ci right 2.838296e-03	k: 5165	n:1870000
Cons ci ratio: 1.794615e-01	ci left: 2.321916e-04	ci right 2.784701e-04	k: 476	n:1870000
KS ci ratio: 9.847421e-04	ci left: 8.940063e-01	ci right 8.948876e-01	k: 1672617	n:1870000
GBF1   1870000 perm   2009 sec   (931 perm/sec)   p_kst 8.944476e-01   p_cons 2.545455e-04   p_joint 2.762032e-03

Joint ci ratio: 5.431681e-02	ci left: 2.687711e-03	ci right 2.838295e-03	k: 5193	n:1880000
Cons ci ratio: 1.790865e-01	ci left: 2.319726e-04	ci right 2.781004e-04	k: 478	n:1880000
KS ci ratio: 9.822620e-04	ci left: 8.939801e-01	ci right 8.948591e-01	k: 1681510	n:1880000
GBF1   1880000 perm   2028 sec   (927 perm/sec)   p_kst 8.944202e-01   p_cons 2.542553e-04   p_joint 2.762234e-03

Joint ci ratio: 5.415019e-02	ci left: 2.690192e-03	ci right 2.840438e-03	k: 5225	n:1890000
Cons ci ratio: 1.785283e-01	ci left: 2.322615e-04	ci right 2.782873e-04	k: 481	n:1890000
KS ci ratio: 9.794821e-04	ci left: 8.940156e-01	ci right 8.948922e-01	k: 1690519	n:1890000
GBF1   1890000 perm   2047 sec   (924 perm/sec)   p_kst 8.944545e-01   p_cons 2.544974e-04   p_joint 2.764550e-03

Joint ci ratio: 5.178452e-02	ci left: 2.928965e-03	ci right 3.085187e-03	k: 5712	n:1900000
Cons ci ratio: 1.777920e-01	ci left: 2.330505e-04	ci right 2.790216e-04	k: 485	n:1900000
KS ci ratio: 9.767910e-04	ci left: 8.940381e-01	ci right 8.949123e-01	k: 1699504	n:1900000
GBF1   1900000 perm   2066 sec   (920 perm/sec)   p_kst 8.944758e-01   p_cons 2.552632e-04   p_joint 3.006316e-03

Joint ci ratio: 5.246160e-02	ci left: 2.838183e-03	ci right 2.991602e-03	k: 5566	n:1910000
Cons ci ratio: 1.774273e-01	ci left: 2.328309e-04	ci right 2.786544e-04	k: 487	n:1910000
KS ci ratio: 9.742840e-04	ci left: 8.940289e-01	ci right 8.949008e-01	k: 1708429	n:1910000
GBF1   1910000 perm   2084 sec   (916 perm/sec)   p_kst 8.944654e-01   p_cons 2.549738e-04   p_joint 2.914136e-03

Joint ci ratio: 5.228802e-02	ci left: 2.842420e-03	ci right 2.995544e-03	k: 5603	n:1920000
Cons ci ratio: 1.772459e-01	ci left: 2.321159e-04	ci right 2.777470e-04	k: 488	n:1920000
KS ci ratio: 9.717693e-04	ci left: 8.940250e-01	ci right 8.948947e-01	k: 1717364	n:1920000
GBF1   1920000 perm   2103 sec   (913 perm/sec)   p_kst 8.944604e-01   p_cons 2.541667e-04   p_joint 2.918229e-03

Joint ci ratio: 5.210688e-02	ci left: 2.847636e-03	ci right 3.000494e-03	k: 5642	n:1930000
Cons ci ratio: 1.763465e-01	ci left: 2.333893e-04	ci right 2.790131e-04	k: 493	n:1930000
KS ci ratio: 9.690878e-04	ci left: 8.940574e-01	ci right 8.949248e-01	k: 1726369	n:1930000
GBF1   1930000 perm   2122 sec   (909 perm/sec)   p_kst 8.944917e-01   p_cons 2.554404e-04   p_joint 2.923316e-03

Joint ci ratio: 5.201491e-02	ci left: 2.843132e-03	ci right 2.995471e-03	k: 5662	n:1940000
Cons ci ratio: 1.761684e-01	ci left: 2.326790e-04	ci right 2.781131e-04	k: 494	n:1940000
KS ci ratio: 9.665973e-04	ci left: 8.940565e-01	ci right 8.949217e-01	k: 1735310	n:1940000
GBF1   1940000 perm   2142 sec   (906 perm/sec)   p_kst 8.944897e-01   p_cons 2.546392e-04   p_joint 2.918557e-03

Joint ci ratio: 5.185940e-02	ci left: 2.845762e-03	ci right 2.997772e-03	k: 5696	n:1950000
Cons ci ratio: 1.754608e-01	ci left: 2.334468e-04	ci right 2.788283e-04	k: 498	n:1950000
KS ci ratio: 9.641913e-04	ci left: 8.940428e-01	ci right 8.949058e-01	k: 1744226	n:1950000
GBF1   1950000 perm   2161 sec   (902 perm/sec)   p_kst 8.944749e-01   p_cons 2.553846e-04   p_joint 2.921026e-03

Joint ci ratio: 5.294741e-02	ci left: 2.714925e-03	ci right 2.863081e-03	k: 5465	n:1960000
Cons ci ratio: 1.749357e-01	ci left: 2.337192e-04	ci right 2.790034e-04	k: 501	n:1960000
KS ci ratio: 9.617773e-04	ci left: 8.940343e-01	ci right 8.948951e-01	k: 1753152	n:1960000
GBF1   1960000 perm   2180 sec   (899 perm/sec)   p_kst 8.944653e-01   p_cons 2.556122e-04   p_joint 2.788265e-03

Joint ci ratio: 5.279305e-02	ci left: 2.717172e-03	ci right 2.865006e-03	k: 5497	n:1970000
Cons ci ratio: 1.740709e-01	ci left: 2.349601e-04	ci right 2.802359e-04	k: 506	n:1970000
KS ci ratio: 9.592058e-04	ci left: 8.940605e-01	ci right 8.949190e-01	k: 1762146	n:1970000
GBF1   1970000 perm   2199 sec   (896 perm/sec)   p_kst 8.944904e-01   p_cons 2.568528e-04   p_joint 2.790355e-03

Joint ci ratio: 5.262571e-02	ci left: 2.720893e-03	ci right 2.868446e-03	k: 5532	n:1980000
Cons ci ratio: 1.733882e-01	ci left: 2.357058e-04	ci right 2.809285e-04	k: 510	n:1980000
KS ci ratio: 9.566446e-04	ci left: 8.940885e-01	ci right 8.949447e-01	k: 1771144	n:1980000
GBF1   1980000 perm   2219 sec   (892 perm/sec)   p_kst 8.945172e-01   p_cons 2.575758e-04   p_joint 2.793939e-03

Joint ci ratio: 5.249779e-02	ci left: 2.720610e-03	ci right 2.867778e-03	k: 5559	n:1990000
Cons ci ratio: 1.733883e-01	ci left: 2.345213e-04	ci right 2.795169e-04	k: 510	n:1990000
KS ci ratio: 9.543501e-04	ci left: 8.940673e-01	ci right 8.949215e-01	k: 1780045	n:1990000
GBF1   1990000 perm   2239 sec   (889 perm/sec)   p_kst 8.944950e-01   p_cons 2.562814e-04   p_joint 2.793467e-03

Joint ci ratio: 5.237080e-02	ci left: 2.720330e-03	ci right 2.867116e-03	k: 5586	n:2000000
Cons ci ratio: 1.730500e-01	ci left: 2.343053e-04	ci right 2.791626e-04	k: 512	n:2000000
KS ci ratio: 9.518829e-04	ci left: 8.940840e-01	ci right 8.949359e-01	k: 1789021	n:2000000
GBF1   2000000 perm   2258 sec   (886 perm/sec)   p_kst 8.945105e-01   p_cons 2.560000e-04   p_joint 2.793000e-03

Joint ci ratio: 5.251747e-02	ci left: 2.691574e-03	ci right 2.837228e-03	k: 5555	n:2010000
Cons ci ratio: 1.727137e-01	ci left: 2.340916e-04	ci right 2.788118e-04	k: 514	n:2010000
KS ci ratio: 9.494323e-04	ci left: 8.941009e-01	ci right 8.949507e-01	k: 1797998	n:2010000
GBF1   2010000 perm   2278 sec   (882 perm/sec)   p_kst 8.945264e-01   p_cons 2.557214e-04   p_joint 2.763682e-03

Joint ci ratio: 5.199952e-02	ci left: 2.732483e-03	ci right 2.878849e-03	k: 5666	n:2020000
Cons ci ratio: 1.722128e-01	ci left: 2.343538e-04	ci right 2.789807e-04	k: 517	n:2020000
KS ci ratio: 9.471396e-04	ci left: 8.940899e-01	ci right 8.949376e-01	k: 1806919	n:2020000
GBF1   2020000 perm   2298 sec   (879 perm/sec)   p_kst 8.945144e-01   p_cons 2.559406e-04   p_joint 2.804950e-03

Joint ci ratio: 5.184415e-02	ci left: 2.735554e-03	ci right 2.881633e-03	k: 5700	n:2030000
Cons ci ratio: 1.718813e-01	ci left: 2.341421e-04	ci right 2.786340e-04	k: 519	n:2030000
KS ci ratio: 9.448165e-04	ci left: 8.940884e-01	ci right 8.949341e-01	k: 1815859	n:2030000
GBF1   2030000 perm   2318 sec   (876 perm/sec)   p_kst 8.945118e-01   p_cons 2.556650e-04   p_joint 2.807882e-03

Joint ci ratio: 5.173995e-02	ci left: 2.733273e-03	ci right 2.878928e-03	k: 5723	n:2040000
Cons ci ratio: 1.710608e-01	ci left: 2.353402e-04	ci right 2.798242e-04	k: 524	n:2040000
KS ci ratio: 9.424468e-04	ci left: 8.940997e-01	ci right 8.949433e-01	k: 1824825	n:2040000
GBF1   2040000 perm   2338 sec   (873 perm/sec)   p_kst 8.945221e-01   p_cons 2.568627e-04   p_joint 2.805392e-03

Joint ci ratio: 5.164539e-02	ci left: 2.730052e-03	ci right 2.875261e-03	k: 5744	n:2050000
Cons ci ratio: 1.705741e-01	ci left: 2.355930e-04	ci right 2.799851e-04	k: 527	n:2050000
KS ci ratio: 9.402091e-04	ci left: 8.940880e-01	ci right 8.949295e-01	k: 1833744	n:2050000
GBF1   2050000 perm   2358 sec   (869 perm/sec)   p_kst 8.945093e-01   p_cons 2.570732e-04   p_joint 2.801951e-03

Joint ci ratio: 5.149763e-02	ci left: 2.732612e-03	ci right 2.877529e-03	k: 5777	n:2060000
Cons ci ratio: 1.702520e-01	ci left: 2.353788e-04	ci right 2.796382e-04	k: 529	n:2060000
KS ci ratio: 9.379051e-04	ci left: 8.940928e-01	ci right 8.949323e-01	k: 1842697	n:2060000
GBF1   2060000 perm   2378 sec   (866 perm/sec)   p_kst 8.945131e-01   p_cons 2.567961e-04   p_joint 2.804369e-03

Joint ci ratio: 5.139551e-02	ci left: 2.730379e-03	ci right 2.874882e-03	k: 5800	n:2070000
Cons ci ratio: 1.702521e-01	ci left: 2.342417e-04	ci right 2.782873e-04	k: 529	n:2070000
KS ci ratio: 9.356205e-04	ci left: 8.940972e-01	ci right 8.949346e-01	k: 1851649	n:2070000
GBF1   2070000 perm   2398 sec   (863 perm/sec)   p_kst 8.945164e-01   p_cons 2.555556e-04   p_joint 2.801932e-03

Joint ci ratio: 5.124988e-02	ci left: 2.732914e-03	ci right 2.877130e-03	k: 5833	n:2080000
Cons ci ratio: 1.697723e-01	ci left: 2.344965e-04	ci right 2.784530e-04	k: 532	n:2080000
KS ci ratio: 9.334618e-04	ci left: 8.940793e-01	ci right 8.949148e-01	k: 1860555	n:2080000
GBF1   2080000 perm   2419 sec   (860 perm/sec)   p_kst 8.944976e-01   p_cons 2.557692e-04   p_joint 2.804327e-03

Joint ci ratio: 5.114046e-02	ci left: 2.731646e-03	ci right 2.875478e-03	k: 5858	n:2090000
Cons ci ratio: 1.694546e-01	ci left: 2.342908e-04	ci right 2.781182e-04	k: 534	n:2090000
KS ci ratio: 9.313274e-04	ci left: 8.940597e-01	ci right 8.948932e-01	k: 1869457	n:2090000
GBF1   2090000 perm   2439 sec   (857 perm/sec)   p_kst 8.944770e-01   p_cons 2.555024e-04   p_joint 2.802871e-03

Joint ci ratio: 5.105349e-02	ci left: 2.728041e-03	ci right 2.871431e-03	k: 5878	n:2100000
Cons ci ratio: 1.691388e-01	ci left: 2.340872e-04	ci right 2.777866e-04	k: 536	n:2100000
KS ci ratio: 9.291044e-04	ci left: 8.940613e-01	ci right 8.948928e-01	k: 1878403	n:2100000
GBF1   2100000 perm   2459 sec   (854 perm/sec)   p_kst 8.944776e-01   p_cons 2.552381e-04   p_joint 2.799048e-03

Joint ci ratio: 5.091507e-02	ci left: 2.730084e-03	ci right 2.873182e-03	k: 5910	n:2110000
Cons ci ratio: 1.685123e-01	ci left: 2.347934e-04	ci right 2.784458e-04	k: 540	n:2110000
KS ci ratio: 9.268973e-04	ci left: 8.940629e-01	ci right 8.948924e-01	k: 1887349	n:2110000
GBF1   2110000 perm   2480 sec   (851 perm/sec)   p_kst 8.944782e-01   p_cons 2.559242e-04   p_joint 2.800948e-03

Joint ci ratio: 5.090677e-02	ci left: 2.718137e-03	ci right 2.860585e-03	k: 5912	n:2120000
Cons ci ratio: 1.682017e-01	ci left: 2.345895e-04	ci right 2.781155e-04	k: 542	n:2120000
KS ci ratio: 9.247150e-04	ci left: 8.940626e-01	ci right 8.948901e-01	k: 1896291	n:2120000
GBF1   2120000 perm   2500 sec   (848 perm/sec)   p_kst 8.944769e-01   p_cons 2.556604e-04   p_joint 2.788679e-03

Joint ci ratio: 5.079953e-02	ci left: 2.716964e-03	ci right 2.859041e-03	k: 5937	n:2130000
Cons ci ratio: 1.678928e-01	ci left: 2.343877e-04	ci right 2.777882e-04	k: 544	n:2130000
KS ci ratio: 9.226170e-04	ci left: 8.940481e-01	ci right 8.948738e-01	k: 1905203	n:2130000
GBF1   2130000 perm   2521 sec   (845 perm/sec)   p_kst 8.944615e-01   p_cons 2.553991e-04   p_joint 2.787324e-03

Joint ci ratio: 5.070575e-02	ci left: 2.714418e-03	ci right 2.856092e-03	k: 5959	n:2140000
Cons ci ratio: 1.674326e-01	ci left: 2.346354e-04	ci right 2.779508e-04	k: 547	n:2140000
KS ci ratio: 9.204101e-04	ci left: 8.940591e-01	ci right 8.948828e-01	k: 1914169	n:2140000
GBF1   2140000 perm   2542 sec   (842 perm/sec)   p_kst 8.944715e-01   p_cons 2.556075e-04   p_joint 2.784579e-03

Joint ci ratio: 5.057436e-02	ci left: 2.716028e-03	ci right 2.857409e-03	k: 5990	n:2150000
Cons ci ratio: 1.671279e-01	ci left: 2.344354e-04	ci right 2.776271e-04	k: 549	n:2150000
KS ci ratio: 9.182438e-04	ci left: 8.940648e-01	ci right 8.948866e-01	k: 1923124	n:2150000
GBF1   2150000 perm   2563 sec   (839 perm/sec)   p_kst 8.944763e-01   p_cons 2.553488e-04   p_joint 2.786047e-03

Joint ci ratio: 5.043978e-02	ci left: 2.718082e-03	ci right 2.859182e-03	k: 6022	n:2160000
Cons ci ratio: 1.666740e-01	ci left: 2.346809e-04	ci right 2.777886e-04	k: 552	n:2160000
KS ci ratio: 9.160883e-04	ci left: 8.940715e-01	ci right 8.948914e-01	k: 1932081	n:2160000
GBF1   2160000 perm   2584 sec   (836 perm/sec)   p_kst 8.944819e-01   p_cons 2.555556e-04   p_joint 2.787963e-03

Joint ci ratio: 5.032711e-02	ci left: 2.717842e-03	ci right 2.858605e-03	k: 6049	n:2170000
Cons ci ratio: 1.662237e-01	ci left: 2.349243e-04	ci right 2.779485e-04	k: 555	n:2170000
KS ci ratio: 9.140527e-04	ci left: 8.940564e-01	ci right 8.948744e-01	k: 1940991	n:2170000
GBF1   2170000 perm   2605 sec   (833 perm/sec)   p_kst 8.944659e-01   p_cons 2.557604e-04   p_joint 2.787558e-03

Joint ci ratio: 5.023178e-02	ci left: 2.715793e-03	ci right 2.856176e-03	k: 6072	n:2180000
Cons ci ratio: 1.660745e-01	ci left: 2.342863e-04	ci right 2.771513e-04	k: 556	n:2180000
KS ci ratio: 9.119775e-04	ci left: 8.940524e-01	ci right 8.948686e-01	k: 1949925	n:2180000
GBF1   2180000 perm   2626 sec   (830 perm/sec)   p_kst 8.944610e-01   p_cons 2.550459e-04   p_joint 2.785321e-03

Joint ci ratio: 5.049963e-02	ci left: 2.674535e-03	ci right 2.813544e-03	k: 6008	n:2190000
Cons ci ratio: 1.656290e-01	ci left: 2.345296e-04	ci right 2.773125e-04	k: 559	n:2190000
KS ci ratio: 9.098811e-04	ci left: 8.940558e-01	ci right 8.948701e-01	k: 1958875	n:2190000
GBF1   2190000 perm   2647 sec   (827 perm/sec)   p_kst 8.944635e-01   p_cons 2.552511e-04   p_joint 2.743379e-03

Joint ci ratio: 5.190916e-02	ci left: 2.518331e-03	ci right 2.652984e-03	k: 5687	n:2200000
Cons ci ratio: 1.650406e-01	ci left: 2.352065e-04	ci right 2.779453e-04	k: 563	n:2200000
KS ci ratio: 9.077925e-04	ci left: 8.940605e-01	ci right 8.948730e-01	k: 1967828	n:2200000
GBF1   2200000 perm   2669 sec   (824 perm/sec)   p_kst 8.944673e-01   p_cons 2.559091e-04   p_joint 2.585000e-03

Joint ci ratio: 5.180456e-02	ci left: 2.517208e-03	ci right 2.651522e-03	k: 5710	n:2210000
Cons ci ratio: 1.646034e-01	ci left: 2.354437e-04	ci right 2.781010e-04	k: 566	n:2210000
KS ci ratio: 9.058268e-04	ci left: 8.940426e-01	ci right 8.948532e-01	k: 1976731	n:2210000
GBF1   2210000 perm   2690 sec   (822 perm/sec)   p_kst 8.944484e-01   p_cons 2.561086e-04   p_joint 2.583710e-03

Joint ci ratio: 5.187777e-02	ci left: 2.498755e-03	ci right 2.632278e-03	k: 5694	n:2220000
Cons ci ratio: 1.641696e-01	ci left: 2.356789e-04	ci right 2.782552e-04	k: 569	n:2220000
KS ci ratio: 9.038178e-04	ci left: 8.940365e-01	ci right 8.948454e-01	k: 1985660	n:2220000
GBF1   2220000 perm   2711 sec   (819 perm/sec)   p_kst 8.944414e-01   p_cons 2.563063e-04   p_joint 2.564865e-03

Joint ci ratio: 5.172351e-02	ci left: 2.502599e-03	ci right 2.635918e-03	k: 5728	n:2230000
Cons ci ratio: 1.638824e-01	ci left: 2.354821e-04	ci right 2.779411e-04	k: 571	n:2230000
KS ci ratio: 9.017963e-04	ci left: 8.940359e-01	ci right 8.948429e-01	k: 1994601	n:2230000
GBF1   2230000 perm   2733 sec   (816 perm/sec)   p_kst 8.944399e-01   p_cons 2.560538e-04   p_joint 2.568610e-03

Joint ci ratio: 5.161103e-02	ci left: 2.502443e-03	ci right 2.635455e-03	k: 5753	n:2240000
Cons ci ratio: 1.635966e-01	ci left: 2.352871e-04	ci right 2.776297e-04	k: 573	n:2240000
KS ci ratio: 8.997862e-04	ci left: 8.940357e-01	ci right 8.948409e-01	k: 2003543	n:2240000
GBF1   2240000 perm   2754 sec   (813 perm/sec)   p_kst 8.944388e-01   p_cons 2.558036e-04   p_joint 2.568304e-03

Joint ci ratio: 5.149928e-02	ci left: 2.502289e-03	ci right 2.634996e-03	k: 5778	n:2250000
Cons ci ratio: 1.635967e-01	ci left: 2.342413e-04	ci right 2.763958e-04	k: 573	n:2250000
KS ci ratio: 8.977895e-04	ci left: 8.940355e-01	ci right 8.948390e-01	k: 2012485	n:2250000
GBF1   2250000 perm   2776 sec   (811 perm/sec)   p_kst 8.944378e-01   p_cons 2.546667e-04   p_joint 2.568000e-03

Joint ci ratio: 5.147279e-02	ci left: 2.493837e-03	ci right 2.626026e-03	k: 5784	n:2260000
Cons ci ratio: 1.633125e-01	ci left: 2.340536e-04	ci right 2.760939e-04	k: 575	n:2260000
KS ci ratio: 8.958627e-04	ci left: 8.940234e-01	ci right 8.948251e-01	k: 2021400	n:2260000
GBF1   2260000 perm   2798 sec   (808 perm/sec)   p_kst 8.944248e-01   p_cons 2.544248e-04   p_joint 2.559292e-03

Joint ci ratio: 5.133537e-02	ci left: 2.496332e-03	ci right 2.628290e-03	k: 5815	n:2270000
Cons ci ratio: 1.628888e-01	ci left: 2.342902e-04	ci right 2.762531e-04	k: 578	n:2270000
KS ci ratio: 8.938481e-04	ci left: 8.940326e-01	ci right 8.948325e-01	k: 2030363	n:2270000
GBF1   2270000 perm   2820 sec   (805 perm/sec)   p_kst 8.944330e-01   p_cons 2.546256e-04   p_joint 2.561674e-03

Joint ci ratio: 5.123419e-02	ci left: 2.495342e-03	ci right 2.626979e-03	k: 5838	n:2280000
Cons ci ratio: 1.621899e-01	ci left: 2.353664e-04	ci right 2.773236e-04	k: 583	n:2280000
KS ci ratio: 8.918450e-04	ci left: 8.940421e-01	ci right 8.948402e-01	k: 2039327	n:2280000
GBF1   2280000 perm   2841 sec   (802 perm/sec)   p_kst 8.944417e-01   p_cons 2.557018e-04   p_joint 2.560526e-03

Joint ci ratio: 5.145583e-02	ci left: 2.462890e-03	ci right 2.593395e-03	k: 5788	n:2290000
Cons ci ratio: 1.617749e-01	ci left: 2.355955e-04	ci right 2.774757e-04	k: 586	n:2290000
KS ci ratio: 8.898512e-04	ci left: 8.940524e-01	ci right 8.948488e-01	k: 2048293	n:2290000
GBF1   2290000 perm   2863 sec   (800 perm/sec)   p_kst 8.944511e-01   p_cons 2.558952e-04   p_joint 2.527511e-03

Joint ci ratio: 5.132296e-02	ci left: 2.465058e-03	ci right 2.595330e-03	k: 5818	n:2300000
Cons ci ratio: 1.616374e-01	ci left: 2.349884e-04	ci right 2.767216e-04	k: 587	n:2300000
KS ci ratio: 8.879034e-04	ci left: 8.940557e-01	ci right 8.948503e-01	k: 2057243	n:2300000
GBF1   2300000 perm   2885 sec   (797 perm/sec)   p_kst 8.944535e-01   p_cons 2.552174e-04   p_joint 2.529565e-03

Joint ci ratio: 5.121746e-02	ci left: 2.464643e-03	ci right 2.594618e-03	k: 5842	n:2310000
Cons ci ratio: 1.610903e-01	ci left: 2.356328e-04	ci right 2.773251e-04	k: 591	n:2310000
KS ci ratio: 8.860009e-04	ci left: 8.940520e-01	ci right 8.948449e-01	k: 2066177	n:2310000
GBF1   2310000 perm   2907 sec   (795 perm/sec)   p_kst 8.944489e-01   p_cons 2.558442e-04   p_joint 2.529004e-03

Joint ci ratio: 5.112572e-02	ci left: 2.462956e-03	ci right 2.592601e-03	k: 5863	n:2320000
Cons ci ratio: 1.608189e-01	ci left: 2.354445e-04	ci right 2.770265e-04	k: 593	n:2320000
KS ci ratio: 8.841125e-04	ci left: 8.940479e-01	ci right 8.948391e-01	k: 2075110	n:2320000
GBF1   2320000 perm   2930 sec   (792 perm/sec)   p_kst 8.944440e-01   p_cons 2.556034e-04   p_joint 2.527155e-03

Joint ci ratio: 5.104751e-02	ci left: 2.460012e-03	ci right 2.589299e-03	k: 5881	n:2330000
Cons ci ratio: 1.602801e-01	ci left: 2.360818e-04	ci right 2.776232e-04	k: 597	n:2330000
KS ci ratio: 8.821540e-04	ci left: 8.940614e-01	ci right 8.948509e-01	k: 2084084	n:2330000
GBF1   2330000 perm   2952 sec   (789 perm/sec)   p_kst 8.944567e-01   p_cons 2.562232e-04   p_joint 2.524034e-03

Joint ci ratio: 5.093073e-02	ci left: 2.460890e-03	ci right 2.589919e-03	k: 5908	n:2340000
Cons ci ratio: 1.597467e-01	ci left: 2.367138e-04	ci right 2.782146e-04	k: 601	n:2340000
KS ci ratio: 8.802064e-04	ci left: 8.940753e-01	ci right 8.948630e-01	k: 2093059	n:2340000
GBF1   2340000 perm   2974 sec   (787 perm/sec)   p_kst 8.944697e-01   p_cons 2.568376e-04   p_joint 2.524786e-03

Joint ci ratio: 5.084482e-02	ci left: 2.458820e-03	ci right 2.587517e-03	k: 5928	n:2350000
Cons ci ratio: 1.596142e-01	ci left: 2.361151e-04	ci right 2.774732e-04	k: 602	n:2350000
KS ci ratio: 8.783072e-04	ci left: 8.940814e-01	ci right 8.948674e-01	k: 2102016	n:2350000
GBF1   2350000 perm   2997 sec   (784 perm/sec)   p_kst 8.944749e-01   p_cons 2.561702e-04   p_joint 2.522553e-03

Joint ci ratio: 5.073796e-02	ci left: 2.458860e-03	ci right 2.587280e-03	k: 5953	n:2360000
Cons ci ratio: 1.586956e-01	ci left: 2.379626e-04	ci right 2.793816e-04	k: 609	n:2360000
KS ci ratio: 8.765029e-04	ci left: 8.940696e-01	ci right 8.948540e-01	k: 2110931	n:2360000
GBF1   2360000 perm   3019 sec   (782 perm/sec)   p_kst 8.944623e-01   p_cons 2.580508e-04   p_joint 2.522458e-03

Joint ci ratio: 5.060633e-02	ci left: 2.461400e-03	ci right 2.589609e-03	k: 5984	n:2370000
Cons ci ratio: 1.585657e-01	ci left: 2.373637e-04	ci right 2.786415e-04	k: 610	n:2370000
KS ci ratio: 8.746042e-04	ci left: 8.940807e-01	ci right 8.948634e-01	k: 2119900	n:2370000
GBF1   2370000 perm   3042 sec   (779 perm/sec)   p_kst 8.944726e-01   p_cons 2.573840e-04   p_joint 2.524895e-03

Joint ci ratio: 5.100976e-02	ci left: 2.412062e-03	ci right 2.538733e-03	k: 5890	n:2380000
Cons ci ratio: 1.584362e-01	ci left: 2.367699e-04	ci right 2.779075e-04	k: 611	n:2380000
KS ci ratio: 8.726866e-04	ci left: 8.940985e-01	ci right 8.948795e-01	k: 2128885	n:2380000
GBF1   2380000 perm   3065 sec   (777 perm/sec)   p_kst 8.944895e-01   p_cons 2.567227e-04   p_joint 2.474790e-03

Joint ci ratio: 5.088893e-02	ci left: 2.413536e-03	ci right 2.539975e-03	k: 5918	n:2390000
Cons ci ratio: 1.577929e-01	ci left: 2.377885e-04	ci right 2.789195e-04	k: 616	n:2390000
KS ci ratio: 8.707719e-04	ci left: 8.941182e-01	ci right 8.948975e-01	k: 2137875	n:2390000
GBF1   2390000 perm   3088 sec   (774 perm/sec)   p_kst 8.945084e-01   p_cons 2.577406e-04   p_joint 2.476151e-03

Joint ci ratio: 5.079037e-02	ci left: 2.412941e-03	ci right 2.539097e-03	k: 5941	n:2400000
Cons ci ratio: 1.577929e-01	ci left: 2.367977e-04	ci right 2.777573e-04	k: 616	n:2400000
KS ci ratio: 8.688908e-04	ci left: 8.941332e-01	ci right 8.949108e-01	k: 2146854	n:2400000
GBF1   2400000 perm   3111 sec   (771 perm/sec)   p_kst 8.945225e-01   p_cons 2.566667e-04   p_joint 2.475417e-03

Joint ci ratio: 5.082494e-02	ci left: 2.399652e-03	ci right 2.525200e-03	k: 5933	n:2410000
Cons ci ratio: 1.576653e-01	ci left: 2.362137e-04	ci right 2.770361e-04	k: 617	n:2410000
KS ci ratio: 8.670219e-04	ci left: 8.941480e-01	ci right 8.949240e-01	k: 2155833	n:2410000
GBF1   2410000 perm   3134 sec   (769 perm/sec)   p_kst 8.945365e-01   p_cons 2.560166e-04   p_joint 2.461826e-03

Joint ci ratio: 5.104557e-02	ci left: 2.368929e-03	ci right 2.493424e-03	k: 5882	n:2420000
Cons ci ratio: 1.574108e-01	ci left: 2.360315e-04	ci right 2.767503e-04	k: 619	n:2420000
KS ci ratio: 8.653184e-04	ci left: 8.941292e-01	ci right 8.949037e-01	k: 2164731	n:2420000
GBF1   2420000 perm   3157 sec   (767 perm/sec)   p_kst 8.945169e-01   p_cons 2.557851e-04   p_joint 2.430579e-03

Joint ci ratio: 5.100239e-02	ci left: 2.363243e-03	ci right 2.487331e-03	k: 5892	n:2430000
Cons ci ratio: 1.571575e-01	ci left: 2.358508e-04	ci right 2.764669e-04	k: 621	n:2430000
KS ci ratio: 8.634761e-04	ci left: 8.941432e-01	ci right 8.949160e-01	k: 2173708	n:2430000
GBF1   2430000 perm   3180 sec   (764 perm/sec)   p_kst 8.945300e-01   p_cons 2.555556e-04   p_joint 2.424691e-03

Joint ci ratio: 5.092906e-02	ci left: 2.360435e-03	ci right 2.484193e-03	k: 5909	n:2440000
Cons ci ratio: 1.571576e-01	ci left: 2.348842e-04	ci right 2.753338e-04	k: 621	n:2440000
KS ci ratio: 8.616755e-04	ci left: 8.941504e-01	ci right 8.949216e-01	k: 2182669	n:2440000
GBF1   2440000 perm   3202 sec   (762 perm/sec)   p_kst 8.945365e-01   p_cons 2.545082e-04   p_joint 2.421721e-03

Joint ci ratio: 5.066361e-02	ci left: 2.375786e-03	ci right 2.499680e-03	k: 5971	n:2450000
Cons ci ratio: 1.569056e-01	ci left: 2.347097e-04	ci right 2.750584e-04	k: 623	n:2450000
KS ci ratio: 8.599177e-04	ci left: 8.941506e-01	ci right 8.949203e-01	k: 2191613	n:2450000
GBF1   2450000 perm   3225 sec   (760 perm/sec)   p_kst 8.945359e-01   p_cons 2.542857e-04   p_joint 2.437143e-03

Joint ci ratio: 5.054944e-02	ci left: 2.376965e-03	ci right 2.500633e-03	k: 5998	n:2460000
Cons ci ratio: 1.566547e-01	ci left: 2.345367e-04	ci right 2.747851e-04	k: 625	n:2460000
KS ci ratio: 8.581669e-04	ci left: 8.941517e-01	ci right 8.949197e-01	k: 2200559	n:2460000
GBF1   2460000 perm   3248 sec   (757 perm/sec)   p_kst 8.945362e-01   p_cons 2.540650e-04   p_joint 2.438211e-03

Joint ci ratio: 5.042346e-02	ci left: 2.379334e-03	ci right 2.502808e-03	k: 6028	n:2470000
Cons ci ratio: 1.565298e-01	ci left: 2.339762e-04	ci right 2.740934e-04	k: 626	n:2470000
KS ci ratio: 8.564489e-04	ci left: 8.941479e-01	ci right 8.949144e-01	k: 2209493	n:2470000
GBF1   2470000 perm   3272 sec   (755 perm/sec)   p_kst 8.945316e-01   p_cons 2.534413e-04   p_joint 2.440486e-03

Joint ci ratio: 4.931673e-02	ci left: 2.478452e-03	ci right 2.604166e-03	k: 6301	n:2480000
Cons ci ratio: 1.564052e-01	ci left: 2.334202e-04	ci right 2.734072e-04	k: 627	n:2480000
KS ci ratio: 8.547192e-04	ci left: 8.941489e-01	ci right 8.949139e-01	k: 2218439	n:2480000
GBF1   2480000 perm   3296 sec   (752 perm/sec)   p_kst 8.945319e-01   p_cons 2.528226e-04   p_joint 2.540726e-03

Joint ci ratio: 4.969391e-02	ci left: 2.430816e-03	ci right 2.555084e-03	k: 6206	n:2490000
Cons ci ratio: 1.560329e-01	ci left: 2.336404e-04	ci right 2.735610e-04	k: 630	n:2490000
KS ci ratio: 8.529636e-04	ci left: 8.941580e-01	ci right 8.949214e-01	k: 2227405	n:2490000
GBF1   2490000 perm   3320 sec   (750 perm/sec)   p_kst 8.945402e-01   p_cons 2.530120e-04   p_joint 2.492369e-03

Joint ci ratio: 4.959413e-02	ci left: 2.430969e-03	ci right 2.554988e-03	k: 6231	n:2500000
Cons ci ratio: 1.552962e-01	ci left: 2.350124e-04	ci right 2.749602e-04	k: 636	n:2500000
KS ci ratio: 8.512549e-04	ci left: 8.941590e-01	ci right 8.949209e-01	k: 2236351	n:2500000
GBF1   2500000 perm   3344 sec   (748 perm/sec)   p_kst 8.945404e-01   p_cons 2.544000e-04   p_joint 2.492400e-03

Joint ci ratio: 4.947514e-02	ci left: 2.433088e-03	ci right 2.556909e-03	k: 6261	n:2510000
Cons ci ratio: 1.549318e-01	ci left: 2.352249e-04	ci right 2.751063e-04	k: 639	n:2510000
KS ci ratio: 8.495295e-04	ci left: 8.941660e-01	ci right 8.949263e-01	k: 2245312	n:2510000
GBF1   2510000 perm   3367 sec   (745 perm/sec)   p_kst 8.945466e-01   p_cons 2.545817e-04   p_joint 2.494422e-03

Joint ci ratio: 4.938455e-02	ci left: 2.432447e-03	ci right 2.556002e-03	k: 6284	n:2520000
Cons ci ratio: 1.545700e-01	ci left: 2.354359e-04	ci right 2.752511e-04	k: 642	n:2520000
KS ci ratio: 8.478930e-04	ci left: 8.941554e-01	ci right 8.949143e-01	k: 2254229	n:2520000
GBF1   2520000 perm   3392 sec   (743 perm/sec)   p_kst 8.945353e-01   p_cons 2.547619e-04   p_joint 2.493651e-03

Joint ci ratio: 4.931013e-02	ci left: 2.430250e-03	ci right 2.553502e-03	k: 6303	n:2530000
Cons ci ratio: 1.543301e-01	ci left: 2.352653e-04	ci right 2.749842e-04	k: 644	n:2530000
KS ci ratio: 8.462180e-04	ci left: 8.941557e-01	ci right 8.949130e-01	k: 2263173	n:2530000
GBF1   2530000 perm   3416 sec   (741 perm/sec)   p_kst 8.945348e-01   p_cons 2.545455e-04   p_joint 2.491304e-03

Joint ci ratio: 4.922044e-02	ci left: 2.429625e-03	ci right 2.552616e-03	k: 6326	n:2540000
Cons ci ratio: 1.540914e-01	ci left: 2.350960e-04	ci right 2.747194e-04	k: 646	n:2540000
KS ci ratio: 8.445371e-04	ci left: 8.941594e-01	ci right 8.949153e-01	k: 2272126	n:2540000
GBF1   2540000 perm   3440 sec   (738 perm/sec)   p_kst 8.945378e-01   p_cons 2.543307e-04   p_joint 2.490551e-03

Joint ci ratio: 4.911186e-02	ci left: 2.430943e-03	ci right 2.553721e-03	k: 6354	n:2550000
Cons ci ratio: 1.539725e-01	ci left: 2.345511e-04	ci right 2.740493e-04	k: 647	n:2550000
KS ci ratio: 8.429660e-04	ci left: 8.941408e-01	ci right 8.948952e-01	k: 2281022	n:2550000
GBF1   2550000 perm   3465 sec   (736 perm/sec)   p_kst 8.945184e-01   p_cons 2.537255e-04   p_joint 2.491765e-03

Joint ci ratio: 4.786712e-02	ci left: 2.550338e-03	ci right 2.675791e-03	k: 6688	n:2560000
Cons ci ratio: 1.538539e-01	ci left: 2.340105e-04	ci right 2.733845e-04	k: 648	n:2560000
KS ci ratio: 8.413636e-04	ci left: 8.941313e-01	ci right 8.948842e-01	k: 2289941	n:2560000
GBF1   2560000 perm   3489 sec   (734 perm/sec)   p_kst 8.945082e-01   p_cons 2.531250e-04   p_joint 2.612500e-03

Joint ci ratio: 4.778149e-02	ci left: 2.549641e-03	ci right 2.674830e-03	k: 6712	n:2570000
Cons ci ratio: 1.536174e-01	ci left: 2.338482e-04	ci right 2.731288e-04	k: 650	n:2570000
KS ci ratio: 8.397183e-04	ci left: 8.941335e-01	ci right 8.948850e-01	k: 2298890	n:2570000
GBF1   2570000 perm   3514 sec   (731 perm/sec)   p_kst 8.945097e-01   p_cons 2.529183e-04   p_joint 2.611673e-03

Joint ci ratio: 4.768923e-02	ci left: 2.549716e-03	ci right 2.674660e-03	k: 6738	n:2580000
Cons ci ratio: 1.533820e-01	ci left: 2.336873e-04	ci right 2.728751e-04	k: 652	n:2580000
KS ci ratio: 8.381446e-04	ci left: 8.941218e-01	ci right 8.948719e-01	k: 2307803	n:2580000
GBF1   2580000 perm   3539 sec   (729 perm/sec)   p_kst 8.944973e-01   p_cons 2.527132e-04   p_joint 2.611628e-03

Joint ci ratio: 4.759398e-02	ci left: 2.550172e-03	ci right 2.674882e-03	k: 6765	n:2590000
Cons ci ratio: 1.530309e-01	ci left: 2.338989e-04	ci right 2.730242e-04	k: 655	n:2590000
KS ci ratio: 8.365592e-04	ci left: 8.941148e-01	ci right 8.948635e-01	k: 2316728	n:2590000
GBF1   2590000 perm   3563 sec   (727 perm/sec)   p_kst 8.944896e-01   p_cons 2.528958e-04   p_joint 2.611969e-03

Joint ci ratio: 4.749929e-02	ci left: 2.550625e-03	ci right 2.675102e-03	k: 6792	n:2600000
Cons ci ratio: 1.527981e-01	ci left: 2.337391e-04	ci right 2.727728e-04	k: 657	n:2600000
KS ci ratio: 8.350457e-04	ci left: 8.940936e-01	ci right 8.948409e-01	k: 2325616	n:2600000
GBF1   2600000 perm   3587 sec   (725 perm/sec)   p_kst 8.944677e-01   p_cons 2.526923e-04   p_joint 2.612308e-03

Joint ci ratio: 4.743655e-02	ci left: 2.547667e-03	ci right 2.671831e-03	k: 6810	n:2610000
Cons ci ratio: 1.526822e-01	ci left: 2.332120e-04	ci right 2.721255e-04	k: 658	n:2610000
KS ci ratio: 8.334422e-04	ci left: 8.940948e-01	ci right 8.948407e-01	k: 2334562	n:2610000
GBF1   2610000 perm   3612 sec   (723 perm/sec)   p_kst 8.944682e-01   p_cons 2.521073e-04   p_joint 2.609195e-03

Joint ci ratio: 4.734627e-02	ci left: 2.547749e-03	ci right 2.671675e-03	k: 6836	n:2620000
Cons ci ratio: 1.525665e-01	ci left: 2.326890e-04	ci right 2.714831e-04	k: 659	n:2620000
KS ci ratio: 8.318530e-04	ci left: 8.940949e-01	ci right 8.948393e-01	k: 2343505	n:2620000
GBF1   2620000 perm   3637 sec   (720 perm/sec)   p_kst 8.944676e-01   p_cons 2.515267e-04   p_joint 2.609160e-03

Joint ci ratio: 4.792268e-02	ci left: 2.476821e-03	ci right 2.598803e-03	k: 6673	n:2630000
Cons ci ratio: 1.522210e-01	ci left: 2.329014e-04	ci right 2.716350e-04	k: 662	n:2630000
KS ci ratio: 8.303447e-04	ci left: 8.940786e-01	ci right 8.948217e-01	k: 2352405	n:2630000
GBF1   2630000 perm   3662 sec   (718 perm/sec)   p_kst 8.944506e-01   p_cons 2.517110e-04   p_joint 2.537262e-03

Joint ci ratio: 4.782603e-02	ci left: 2.477544e-03	ci right 2.599309e-03	k: 6700	n:2640000
Cons ci ratio: 1.519919e-01	ci left: 2.327480e-04	ci right 2.713924e-04	k: 664	n:2640000
KS ci ratio: 8.288296e-04	ci left: 8.940658e-01	ci right 8.948075e-01	k: 2361314	n:2640000
GBF1   2640000 perm   3687 sec   (716 perm/sec)   p_kst 8.944371e-01   p_cons 2.515152e-04   p_joint 2.537879e-03

Joint ci ratio: 4.772639e-02	ci left: 2.478634e-03	ci right 2.600193e-03	k: 6728	n:2650000
Cons ci ratio: 1.514236e-01	ci left: 2.336849e-04	ci right 2.723267e-04	k: 669	n:2650000
KS ci ratio: 8.271393e-04	ci left: 8.940951e-01	ci right 8.948353e-01	k: 2370334	n:2650000
GBF1   2650000 perm   3711 sec   (714 perm/sec)   p_kst 8.944657e-01   p_cons 2.524528e-04   p_joint 2.538868e-03

Joint ci ratio: 4.764506e-02	ci left: 2.477860e-03	ci right 2.599167e-03	k: 6751	n:2660000
Cons ci ratio: 1.514237e-01	ci left: 2.328063e-04	ci right 2.713029e-04	k: 669	n:2660000
KS ci ratio: 8.256334e-04	ci left: 8.940843e-01	ci right 8.948231e-01	k: 2379248	n:2660000
GBF1   2660000 perm   3737 sec   (712 perm/sec)   p_kst 8.944541e-01   p_cons 2.515038e-04   p_joint 2.537970e-03

Joint ci ratio: 4.777670e-02	ci left: 2.454886e-03	ci right 2.575410e-03	k: 6714	n:2670000
Cons ci ratio: 1.511982e-01	ci left: 2.326551e-04	ci right 2.710642e-04	k: 671	n:2670000
KS ci ratio: 8.241063e-04	ci left: 8.940803e-01	ci right 8.948178e-01	k: 2388180	n:2670000
GBF1   2670000 perm   3762 sec   (710 perm/sec)   p_kst 8.944494e-01   p_cons 2.513109e-04   p_joint 2.514607e-03

Joint ci ratio: 4.767029e-02	ci left: 2.456787e-03	ci right 2.577128e-03	k: 6744	n:2680000
Cons ci ratio: 1.509737e-01	ci left: 2.325050e-04	ci right 2.708272e-04	k: 673	n:2680000
KS ci ratio: 8.225633e-04	ci left: 8.940819e-01	ci right 8.948180e-01	k: 2397127	n:2680000
GBF1   2680000 perm   3787 sec   (708 perm/sec)   p_kst 8.944504e-01   p_cons 2.511194e-04   p_joint 2.516418e-03

Joint ci ratio: 4.757867e-02	ci left: 2.457204e-03	ci right 2.577328e-03	k: 6770	n:2690000
Cons ci ratio: 1.508619e-01	ci left: 2.319984e-04	ci right 2.702062e-04	k: 674	n:2690000
KS ci ratio: 8.210548e-04	ci left: 8.940776e-01	ci right 8.948123e-01	k: 2406058	n:2690000
GBF1   2690000 perm   3812 sec   (706 perm/sec)   p_kst 8.944454e-01   p_cons 2.505576e-04   p_joint 2.516729e-03

Joint ci ratio: 4.749108e-02	ci left: 2.457253e-03	ci right 2.577152e-03	k: 6795	n:2700000
Cons ci ratio: 1.506389e-01	ci left: 2.318520e-04	ci right 2.699741e-04	k: 676	n:2700000
KS ci ratio: 8.195240e-04	ci left: 8.940803e-01	ci right 8.948137e-01	k: 2415008	n:2700000
GBF1   2700000 perm   3838 sec   (703 perm/sec)   p_kst 8.944474e-01   p_cons 2.503704e-04   p_joint 2.516667e-03

Joint ci ratio: 4.803645e-02	ci left: 2.392400e-03	ci right 2.510512e-03	k: 6642	n:2710000
Cons ci ratio: 1.506390e-01	ci left: 2.309964e-04	ci right 2.689779e-04	k: 676	n:2710000
KS ci ratio: 8.180257e-04	ci left: 8.940775e-01	ci right 8.948095e-01	k: 2423943	n:2710000
GBF1   2710000 perm   3864 sec   (701 perm/sec)   p_kst 8.944439e-01   p_cons 2.494465e-04   p_joint 2.450923e-03

Joint ci ratio: 4.826664e-02	ci left: 2.360721e-03	ci right 2.477843e-03	k: 6579	n:2720000
Cons ci ratio: 1.505279e-01	ci left: 2.305009e-04	ci right 2.683705e-04	k: 677	n:2720000
KS ci ratio: 8.164815e-04	ci left: 8.940872e-01	ci right 8.948179e-01	k: 2432912	n:2720000
GBF1   2720000 perm   3889 sec   (699 perm/sec)   p_kst 8.944529e-01   p_cons 2.488971e-04   p_joint 2.418750e-03

Joint ci ratio: 4.820448e-02	ci left: 2.358225e-03	ci right 2.475069e-03	k: 6596	n:2730000
Cons ci ratio: 1.501960e-01	ci left: 2.307142e-04	ci right 2.685277e-04	k: 680	n:2730000
KS ci ratio: 8.149777e-04	ci left: 8.940895e-01	ci right 8.948188e-01	k: 2441861	n:2730000
GBF1   2730000 perm   3915 sec   (697 perm/sec)   p_kst 8.944546e-01   p_cons 2.490842e-04   p_joint 2.416117e-03

Joint ci ratio: 4.812432e-02	ci left: 2.357551e-03	ci right 2.474161e-03	k: 6618	n:2740000
Cons ci ratio: 1.498662e-01	ci left: 2.309259e-04	ci right 2.686836e-04	k: 683	n:2740000
KS ci ratio: 8.134711e-04	ci left: 8.940944e-01	ci right 8.948223e-01	k: 2450817	n:2740000
GBF1   2740000 perm   3940 sec   (695 perm/sec)   p_kst 8.944588e-01   p_cons 2.492701e-04   p_joint 2.415328e-03

Joint ci ratio: 4.802644e-02	ci left: 2.358678e-03	ci right 2.475101e-03	k: 6645	n:2750000
Cons ci ratio: 1.492131e-01	ci left: 2.321864e-04	ci right 2.699699e-04	k: 689	n:2750000
KS ci ratio: 8.119901e-04	ci left: 8.940952e-01	ci right 8.948218e-01	k: 2459762	n:2750000
GBF1   2750000 perm   3966 sec   (693 perm/sec)   p_kst 8.944589e-01   p_cons 2.505455e-04   p_joint 2.416364e-03

Joint ci ratio: 5.010204e-02	ci left: 2.157589e-03	ci right 2.268821e-03	k: 6107	n:2760000
Cons ci ratio: 1.489973e-01	ci left: 2.320428e-04	ci right 2.697434e-04	k: 691	n:2760000
KS ci ratio: 8.105094e-04	ci left: 8.940978e-01	ci right 8.948231e-01	k: 2468712	n:2760000
GBF1   2760000 perm   3992 sec   (691 perm/sec)   p_kst 8.944609e-01   p_cons 2.503623e-04   p_joint 2.212681e-03

Joint ci ratio: 4.694862e-02	ci left: 2.451522e-03	ci right 2.569738e-03	k: 6953	n:2770000
Cons ci ratio: 1.485685e-01	ci left: 2.325953e-04	ci right 2.702674e-04	k: 695	n:2770000
KS ci ratio: 8.089980e-04	ci left: 8.941094e-01	ci right 8.948334e-01	k: 2477687	n:2770000
GBF1   2770000 perm   4018 sec   (689 perm/sec)   p_kst 8.944718e-01   p_cons 2.509025e-04   p_joint 2.510108e-03

Joint ci ratio: 4.685436e-02	ci left: 2.452658e-03	ci right 2.570685e-03	k: 6981	n:2780000
Cons ci ratio: 1.482493e-01	ci left: 2.327977e-04	ci right 2.704144e-04	k: 698	n:2780000
KS ci ratio: 8.075735e-04	ci left: 8.941026e-01	ci right 8.948253e-01	k: 2486611	n:2780000
GBF1   2780000 perm   4044 sec   (687 perm/sec)   p_kst 8.944644e-01   p_cons 2.510791e-04   p_joint 2.511151e-03

Joint ci ratio: 4.911714e-02	ci left: 2.221824e-03	ci right 2.334052e-03	k: 6354	n:2790000
Cons ci ratio: 1.481435e-01	ci left: 2.323085e-04	ci right 2.698169e-04	k: 699	n:2790000
KS ci ratio: 8.061106e-04	ci left: 8.941066e-01	ci right 8.948280e-01	k: 2495565	n:2790000
GBF1   2790000 perm   4070 sec   (685 perm/sec)   p_kst 8.944677e-01   p_cons 2.505376e-04   p_joint 2.277419e-03

Joint ci ratio: 4.905162e-02	ci left: 2.219885e-03	ci right 2.331862e-03	k: 6371	n:2800000
Cons ci ratio: 1.480378e-01	ci left: 2.318227e-04	ci right 2.692236e-04	k: 700	n:2800000
KS ci ratio: 8.046542e-04	ci left: 8.941110e-01	ci right 8.948311e-01	k: 2504520	n:2800000
GBF1   2800000 perm   4096 sec   (684 perm/sec)   p_kst 8.944714e-01   p_cons 2.500000e-04   p_joint 2.275357e-03

Joint ci ratio: 4.915243e-02	ci left: 2.202846e-03	ci right 2.314198e-03	k: 6345	n:2810000
Cons ci ratio: 1.480379e-01	ci left: 2.309977e-04	ci right 2.682655e-04	k: 700	n:2810000
KS ci ratio: 8.032812e-04	ci left: 8.940975e-01	ci right 8.948163e-01	k: 2513425	n:2810000
GBF1   2810000 perm   4123 sec   (682 perm/sec)   p_kst 8.944573e-01   p_cons 2.491103e-04   p_joint 2.258007e-03

Joint ci ratio: 4.906746e-02	ci left: 2.202740e-03	ci right 2.313889e-03	k: 6367	n:2820000
Cons ci ratio: 1.475127e-01	ci left: 2.318861e-04	ci right 2.691528e-04	k: 705	n:2820000
KS ci ratio: 8.017873e-04	ci left: 8.941142e-01	ci right 8.948318e-01	k: 2522415	n:2820000
GBF1   2820000 perm   4149 sec   (680 perm/sec)   p_kst 8.944734e-01   p_cons 2.500000e-04   p_joint 2.257801e-03

Joint ci ratio: 4.919947e-02	ci left: 2.183090e-03	ci right 2.293551e-03	k: 6333	n:2830000
Cons ci ratio: 1.474083e-01	ci left: 2.314070e-04	ci right 2.685681e-04	k: 706	n:2830000
KS ci ratio: 8.004649e-04	ci left: 8.940923e-01	ci right 8.948086e-01	k: 2531296	n:2830000
GBF1   2830000 perm   4175 sec   (678 perm/sec)   p_kst 8.944509e-01   p_cons 2.494700e-04   p_joint 2.237809e-03

Joint ci ratio: 4.557144e-02	ci left: 2.539365e-03	ci right 2.658131e-03	k: 7379	n:2840000
Cons ci ratio: 1.470966e-01	ci left: 2.316096e-04	ci right 2.687177e-04	k: 709	n:2840000
KS ci ratio: 7.990418e-04	ci left: 8.940959e-01	ci right 8.948110e-01	k: 2540249	n:2840000
GBF1   2840000 perm   4202 sec   (676 perm/sec)   p_kst 8.944539e-01   p_cons 2.496479e-04   p_joint 2.598239e-03

Joint ci ratio: 4.547599e-02	ci left: 2.541209e-03	ci right 2.659806e-03	k: 7410	n:2850000
Cons ci ratio: 1.468898e-01	ci left: 2.314729e-04	ci right 2.685023e-04	k: 711	n:2850000
KS ci ratio: 7.976795e-04	ci left: 8.940869e-01	ci right 8.948007e-01	k: 2549166	n:2850000
GBF1   2850000 perm   4229 sec   (674 perm/sec)   p_kst 8.944442e-01   p_cons 2.494737e-04   p_joint 2.600000e-03

Joint ci ratio: 4.542706e-02	ci left: 2.537854e-03	ci right 2.656164e-03	k: 7426	n:2860000
Cons ci ratio: 1.467868e-01	ci left: 2.310003e-04	ci right 2.679260e-04	k: 712	n:2860000
KS ci ratio: 7.962284e-04	ci left: 8.941007e-01	ci right 8.948132e-01	k: 2558148	n:2860000
GBF1   2860000 perm   4256 sec   (672 perm/sec)   p_kst 8.944573e-01   p_cons 2.489510e-04   p_joint 2.596503e-03

Joint ci ratio: 4.534471e-02	ci left: 2.538312e-03	ci right 2.656423e-03	k: 7453	n:2870000
Cons ci ratio: 1.465814e-01	ci left: 2.308667e-04	ci right 2.677149e-04	k: 714	n:2870000
KS ci ratio: 7.948335e-04	ci left: 8.941028e-01	ci right 8.948141e-01	k: 2567097	n:2870000
GBF1   2870000 perm   4283 sec   (670 perm/sec)   p_kst 8.944589e-01   p_cons 2.487805e-04   p_joint 2.596864e-03

Joint ci ratio: 4.713468e-02	ci left: 2.339355e-03	ci right 2.452621e-03	k: 6899	n:2880000
Cons ci ratio: 1.464790e-01	ci left: 2.303996e-04	ci right 2.671453e-04	k: 715	n:2880000
KS ci ratio: 7.934212e-04	ci left: 8.941109e-01	ci right 8.948209e-01	k: 2576063	n:2880000
GBF1   2880000 perm   4309 sec   (668 perm/sec)   p_kst 8.944663e-01   p_cons 2.482639e-04   p_joint 2.395486e-03

Joint ci ratio: 4.703250e-02	ci left: 2.341519e-03	ci right 2.454638e-03	k: 6929	n:2890000
Cons ci ratio: 1.464791e-01	ci left: 2.296024e-04	ci right 2.662209e-04	k: 715	n:2890000
KS ci ratio: 7.920613e-04	ci left: 8.941082e-01	ci right 8.948170e-01	k: 2584998	n:2890000
GBF1   2890000 perm   4336 sec   (666 perm/sec)   p_kst 8.944630e-01   p_cons 2.474048e-04   p_joint 2.397578e-03

Joint ci ratio: 4.698175e-02	ci left: 2.338556e-03	ci right 2.451407e-03	k: 6944	n:2900000
Cons ci ratio: 1.460716e-01	ci left: 2.301395e-04	ci right 2.667327e-04	k: 719	n:2900000
KS ci ratio: 7.906911e-04	ci left: 8.941096e-01	ci right 8.948172e-01	k: 2593945	n:2900000
GBF1   2900000 perm   4363 sec   (665 perm/sec)   p_kst 8.944638e-01   p_cons 2.479310e-04   p_joint 2.394483e-03

Joint ci ratio: 4.777810e-02	ci left: 2.252756e-03	ci right 2.363359e-03	k: 6715	n:2910000
Cons ci ratio: 1.457682e-01	ci left: 2.303419e-04	ci right 2.668846e-04	k: 722	n:2910000
KS ci ratio: 7.893078e-04	ci left: 8.941159e-01	ci right 8.948222e-01	k: 2602906	n:2910000
GBF1   2910000 perm   4390 sec   (663 perm/sec)   p_kst 8.944694e-01   p_cons 2.481100e-04   p_joint 2.307560e-03

Joint ci ratio: 4.770360e-02	ci left: 2.252147e-03	ci right 2.362543e-03	k: 6736	n:2920000
Cons ci ratio: 1.454667e-01	ci left: 2.305430e-04	ci right 2.670354e-04	k: 725	n:2920000
KS ci ratio: 7.879661e-04	ci left: 8.941138e-01	ci right 8.948190e-01	k: 2611843	n:2920000
GBF1   2920000 perm   4417 sec   (661 perm/sec)   p_kst 8.944668e-01   p_cons 2.482877e-04   p_joint 2.306849e-03

Joint ci ratio: 4.979981e-02	ci left: 2.057680e-03	ci right 2.163103e-03	k: 6182	n:2930000
Cons ci ratio: 1.452668e-01	ci left: 2.304140e-04	ci right 2.668314e-04	k: 727	n:2930000
KS ci ratio: 8.019635e-04	ci left: 8.904061e-01	ci right 8.911208e-01	k: 2609938	n:2930000
GBF1   2930000 perm   4444 sec   (659 perm/sec)   p_kst 8.907638e-01   p_cons 2.481229e-04   p_joint 2.109898e-03

Joint ci ratio: 4.971947e-02	ci left: 2.057399e-03	ci right 2.162633e-03	k: 6202	n:2940000
Cons ci ratio: 1.449684e-01	ci left: 2.306136e-04	ci right 2.669813e-04	k: 730	n:2940000
KS ci ratio: 8.005462e-04	ci left: 8.904194e-01	ci right 8.911329e-01	k: 2618883	n:2940000
GBF1   2940000 perm   4472 sec   (657 perm/sec)   p_kst 8.907765e-01   p_cons 2.482993e-04   p_joint 2.109524e-03

Joint ci ratio: 4.960757e-02	ci left: 2.059799e-03	ci right 2.164911e-03	k: 6230	n:2950000
Cons ci ratio: 1.448694e-01	ci left: 2.301586e-04	ci right 2.664275e-04	k: 731	n:2950000
KS ci ratio: 7.992588e-04	ci left: 8.904028e-01	ci right 8.911151e-01	k: 2627740	n:2950000
GBF1   2950000 perm   4500 sec   (656 perm/sec)   p_kst 8.907593e-01   p_cons 2.477966e-04   p_joint 2.111864e-03

Joint ci ratio: 4.954007e-02	ci left: 2.058512e-03	ci right 2.163412e-03	k: 6247	n:2960000
Cons ci ratio: 1.446719e-01	ci left: 2.300322e-04	ci right 2.662276e-04	k: 733	n:2960000
KS ci ratio: 7.979139e-04	ci left: 8.904019e-01	ci right 8.911129e-01	k: 2636643	n:2960000
GBF1   2960000 perm   4528 sec   (654 perm/sec)   p_kst 8.907578e-01   p_cons 2.476351e-04   p_joint 2.110473e-03

Joint ci ratio: 4.944517e-02	ci left: 2.059562e-03	ci right 2.164308e-03	k: 6271	n:2970000
Cons ci ratio: 1.443771e-01	ci left: 2.302312e-04	ci right 2.663778e-04	k: 736	n:2970000
KS ci ratio: 7.965772e-04	ci left: 8.904006e-01	ci right 8.911105e-01	k: 2645545	n:2970000
GBF1   2970000 perm   4556 sec   (652 perm/sec)   p_kst 8.907559e-01   p_cons 2.478114e-04   p_joint 2.111448e-03

Joint ci ratio: 4.938227e-02	ci left: 2.057953e-03	ci right 2.162481e-03	k: 6287	n:2980000
Cons ci ratio: 1.442793e-01	ci left: 2.297821e-04	ci right 2.658316e-04	k: 737	n:2980000
KS ci ratio: 7.952334e-04	ci left: 8.904027e-01	ci right 8.911113e-01	k: 2654457	n:2980000
GBF1   2980000 perm   4583 sec   (650 perm/sec)   p_kst 8.907574e-01   p_cons 2.473154e-04   p_joint 2.109732e-03

Joint ci ratio: 4.929610e-02	ci left: 2.058338e-03	ci right 2.162697e-03	k: 6309	n:2990000
Cons ci ratio: 1.438898e-01	ci left: 2.303032e-04	ci right 2.663285e-04	k: 741	n:2990000
KS ci ratio: 7.938624e-04	ci left: 8.904131e-01	ci right 8.911206e-01	k: 2663394	n:2990000
GBF1   2990000 perm   4611 sec   (648 perm/sec)   p_kst 8.907672e-01   p_cons 2.478261e-04   p_joint 2.110033e-03

Joint ci ratio: 4.920649e-02	ci left: 2.059049e-03	ci right 2.163249e-03	k: 6332	n:3000000
Cons ci ratio: 1.436963e-01	ci left: 2.301782e-04	ci right 2.661314e-04	k: 743	n:3000000
KS ci ratio: 7.925363e-04	ci left: 8.904141e-01	ci right 8.911204e-01	k: 2672303	n:3000000
GBF1   3000000 perm   4639 sec   (647 perm/sec)   p_kst 8.907677e-01   p_cons 2.476667e-04   p_joint 2.110667e-03

Joint ci ratio: 4.911736e-02	ci left: 2.059755e-03	ci right 2.163798e-03	k: 6355	n:3010000
Cons ci ratio: 1.434075e-01	ci left: 2.303744e-04	ci right 2.662796e-04	k: 746	n:3010000
KS ci ratio: 7.912885e-04	ci left: 8.903975e-01	ci right 8.911027e-01	k: 2681159	n:3010000
GBF1   3010000 perm   4666 sec   (645 perm/sec)   p_kst 8.907505e-01   p_cons 2.478405e-04   p_joint 2.111296e-03

Joint ci ratio: 4.903257e-02	ci left: 2.060130e-03	ci right 2.164007e-03	k: 6377	n:3020000
Cons ci ratio: 1.430250e-01	ci left: 2.308886e-04	ci right 2.667699e-04	k: 750	n:3020000
KS ci ratio: 7.899512e-04	ci left: 8.904046e-01	ci right 8.911086e-01	k: 2690086	n:3020000
GBF1   3020000 perm   4694 sec   (643 perm/sec)   p_kst 8.907570e-01   p_cons 2.483444e-04   p_joint 2.111589e-03

Joint ci ratio: 4.894438e-02	ci left: 2.060829e-03	ci right 2.164549e-03	k: 6400	n:3030000
Cons ci ratio: 1.426456e-01	ci left: 2.313995e-04	ci right 2.672567e-04	k: 754	n:3030000
KS ci ratio: 7.886634e-04	ci left: 8.904010e-01	ci right 8.911038e-01	k: 2698981	n:3030000
GBF1   3030000 perm   4722 sec   (642 perm/sec)   p_kst 8.907528e-01   p_cons 2.488449e-04   p_joint 2.112211e-03

Joint ci ratio: 4.886429e-02	ci left: 2.060873e-03	ci right 2.164421e-03	k: 6421	n:3040000
Cons ci ratio: 1.425513e-01	ci left: 2.309555e-04	ci right 2.667182e-04	k: 755	n:3040000
KS ci ratio: 7.873778e-04	ci left: 8.903985e-01	ci right 8.911001e-01	k: 2707879	n:3040000
GBF1   3040000 perm   4750 sec   (640 perm/sec)   p_kst 8.907497e-01   p_cons 2.483553e-04   p_joint 2.112171e-03

Joint ci ratio: 4.879598e-02	ci left: 2.059946e-03	ci right 2.163298e-03	k: 6439	n:3050000
Cons ci ratio: 1.422693e-01	ci left: 2.311469e-04	ci right 2.668624e-04	k: 758	n:3050000
KS ci ratio: 7.860800e-04	ci left: 8.904005e-01	ci right 8.911010e-01	k: 2716791	n:3050000
GBF1   3050000 perm   4779 sec   (638 perm/sec)   p_kst 8.907511e-01   p_cons 2.485246e-04   p_joint 2.111148e-03

Joint ci ratio: 4.875823e-02	ci left: 2.056442e-03	ci right 2.159536e-03	k: 6449	n:3060000
Cons ci ratio: 1.422693e-01	ci left: 2.303915e-04	ci right 2.659903e-04	k: 758	n:3060000
KS ci ratio: 7.847860e-04	ci left: 8.904032e-01	ci right 8.911026e-01	k: 2725705	n:3060000
GBF1   3060000 perm   4807 sec   (637 perm/sec)   p_kst 8.907533e-01   p_cons 2.477124e-04   p_joint 2.107516e-03

Joint ci ratio: 4.864516e-02	ci left: 2.059397e-03	ci right 2.162393e-03	k: 6479	n:3070000
Cons ci ratio: 1.418959e-01	ci left: 2.308977e-04	ci right 2.664731e-04	k: 762	n:3070000
KS ci ratio: 7.834839e-04	ci left: 8.904095e-01	ci right 8.911077e-01	k: 2734630	n:3070000
GBF1   3070000 perm   4836 sec   (635 perm/sec)   p_kst 8.907590e-01   p_cons 2.482085e-04   p_joint 2.110423e-03

Joint ci ratio: 4.892608e-02	ci left: 2.028977e-03	ci right 2.131054e-03	k: 6405	n:3080000
Cons ci ratio: 1.416177e-01	ci left: 2.310875e-04	ci right 2.666165e-04	k: 765	n:3080000
KS ci ratio: 7.822430e-04	ci left: 8.904021e-01	ci right 8.910992e-01	k: 2743513	n:3080000
GBF1   3080000 perm   4864 sec   (633 perm/sec)   p_kst 8.907510e-01   p_cons 2.483766e-04   p_joint 2.079545e-03

Joint ci ratio: 4.881945e-02	ci left: 2.031361e-03	ci right 2.133330e-03	k: 6433	n:3090000
Cons ci ratio: 1.413412e-01	ci left: 2.312761e-04	ci right 2.667588e-04	k: 768	n:3090000
KS ci ratio: 7.809678e-04	ci left: 8.904047e-01	ci right 8.911007e-01	k: 2752427	n:3090000
GBF1   3090000 perm   4893 sec   (632 perm/sec)   p_kst 8.907531e-01   p_cons 2.485437e-04   p_joint 2.081877e-03

Joint ci ratio: 4.871729e-02	ci left: 2.033412e-03	ci right 2.135264e-03	k: 6460	n:3100000
Cons ci ratio: 1.408839e-01	ci left: 2.320860e-04	ci right 2.675681e-04	k: 773	n:3100000
KS ci ratio: 7.797169e-04	ci left: 8.904029e-01	ci right 8.910977e-01	k: 2761327	n:3100000
GBF1   3100000 perm   4922 sec   (630 perm/sec)   p_kst 8.907506e-01   p_cons 2.493548e-04   p_joint 2.083871e-03

Joint ci ratio: 4.863079e-02	ci left: 2.034179e-03	ci right 2.135883e-03	k: 6483	n:3110000
Cons ci ratio: 1.406116e-01	ci left: 2.322704e-04	ci right 2.677064e-04	k: 776	n:3110000
KS ci ratio: 7.784514e-04	ci left: 8.904062e-01	ci right 8.910999e-01	k: 2770243	n:3110000
GBF1   3110000 perm   4950 sec   (628 perm/sec)   p_kst 8.907534e-01   p_cons 2.495177e-04   p_joint 2.084566e-03

Joint ci ratio: 4.859341e-02	ci left: 2.030825e-03	ci right 2.132282e-03	k: 6493	n:3120000
Cons ci ratio: 1.403409e-01	ci left: 2.324537e-04	ci right 2.678436e-04	k: 779	n:3120000
KS ci ratio: 7.772688e-04	ci left: 8.903902e-01	ci right 8.910828e-01	k: 2779099	n:3120000
GBF1   3120000 perm   4979 sec   (627 perm/sec)   p_kst 8.907369e-01   p_cons 2.496795e-04   p_joint 2.081090e-03

Joint ci ratio: 4.695203e-02	ci left: 2.169866e-03	ci right 2.274508e-03	k: 6954	n:3130000
Cons ci ratio: 1.400718e-01	ci left: 2.326359e-04	ci right 2.679800e-04	k: 782	n:3130000
KS ci ratio: 7.760190e-04	ci left: 8.903925e-01	ci right 8.910841e-01	k: 2788012	n:3130000
GBF1   3130000 perm   5008 sec   (625 perm/sec)   p_kst 8.907387e-01   p_cons 2.498403e-04   p_joint 2.221725e-03

Joint ci ratio: 4.687795e-02	ci left: 2.169880e-03	ci right 2.274353e-03	k: 6976	n:3140000
Cons ci ratio: 1.399825e-01	ci left: 2.322023e-04	ci right 2.674562e-04	k: 783	n:3140000
KS ci ratio: 7.748107e-04	ci left: 8.903859e-01	ci right 8.910764e-01	k: 2796897	n:3140000
GBF1   3140000 perm   5037 sec   (623 perm/sec)   p_kst 8.907315e-01   p_cons 2.493631e-04   p_joint 2.221656e-03

Joint ci ratio: 4.679752e-02	ci left: 2.170522e-03	ci right 2.274841e-03	k: 7000	n:3150000
Cons ci ratio: 1.393616e-01	ci left: 2.336098e-04	ci right 2.689069e-04	k: 790	n:3150000
KS ci ratio: 7.736597e-04	ci left: 8.903664e-01	ci right 8.910558e-01	k: 2805741	n:3150000
GBF1   3150000 perm   5067 sec   (622 perm/sec)   p_kst 8.907114e-01   p_cons 2.507937e-04   p_joint 2.222222e-03

Joint ci ratio: 4.672750e-02	ci left: 2.170221e-03	ci right 2.274366e-03	k: 7021	n:3160000
Cons ci ratio: 1.391858e-01	ci left: 2.334814e-04	ci right 2.687109e-04	k: 792	n:3160000
KS ci ratio: 7.724247e-04	ci left: 8.903694e-01	ci right 8.910577e-01	k: 2814656	n:3160000
GBF1   3160000 perm   5096 sec   (620 perm/sec)   p_kst 8.907139e-01   p_cons 2.506329e-04   p_joint 2.221835e-03

Joint ci ratio: 4.712617e-02	ci left: 2.126586e-03	ci right 2.229532e-03	k: 6903	n:3170000
Cons ci ratio: 1.388360e-01	ci left: 2.339628e-04	ci right 2.691689e-04	k: 796	n:3170000
KS ci ratio: 7.712056e-04	ci left: 8.903699e-01	ci right 8.910571e-01	k: 2823563	n:3170000
GBF1   3170000 perm   5125 sec   (619 perm/sec)   p_kst 8.907139e-01   p_cons 2.511041e-04   p_joint 2.177603e-03

Joint ci ratio: 4.703765e-02	ci left: 2.127979e-03	ci right 2.230793e-03	k: 6929	n:3180000
Cons ci ratio: 1.384889e-01	ci left: 2.344413e-04	ci right 2.696239e-04	k: 800	n:3180000
KS ci ratio: 7.700271e-04	ci left: 8.903616e-01	ci right 8.910478e-01	k: 2832442	n:3180000
GBF1   3180000 perm   5155 sec   (617 perm/sec)   p_kst 8.907050e-01   p_cons 2.515723e-04   p_joint 2.178931e-03

Joint ci ratio: 4.580559e-02	ci left: 2.238121e-03	ci right 2.343350e-03	k: 7306	n:3190000
Cons ci ratio: 1.382303e-01	ci left: 2.346142e-04	ci right 2.697517e-04	k: 803	n:3190000
KS ci ratio: 7.687561e-04	ci left: 8.903781e-01	ci right 8.910632e-01	k: 2841400	n:3190000
GBF1   3190000 perm   5184 sec   (615 perm/sec)   p_kst 8.907210e-01   p_cons 2.517241e-04   p_joint 2.290282e-03

Joint ci ratio: 4.575557e-02	ci left: 2.236070e-03	ci right 2.341084e-03	k: 7322	n:3200000
Cons ci ratio: 1.380587e-01	ci left: 2.344845e-04	ci right 2.695553e-04	k: 805	n:3200000
KS ci ratio: 7.676023e-04	ci left: 8.903664e-01	ci right 8.910504e-01	k: 2850268	n:3200000
GBF1   3200000 perm   5214 sec   (614 perm/sec)   p_kst 8.907088e-01   p_cons 2.515625e-04   p_joint 2.288125e-03

Joint ci ratio: 4.570572e-02	ci left: 2.234031e-03	ci right 2.338833e-03	k: 7338	n:3210000
Cons ci ratio: 1.378877e-01	ci left: 2.343555e-04	ci right 2.693601e-04	k: 807	n:3210000
KS ci ratio: 7.664487e-04	ci left: 8.903560e-01	ci right 8.910390e-01	k: 2859140	n:3210000
GBF1   3210000 perm   5244 sec   (612 perm/sec)   p_kst 8.906978e-01   p_cons 2.514019e-04   p_joint 2.285981e-03

Joint ci ratio: 4.595128e-02	ci left: 2.203146e-03	ci right 2.307069e-03	k: 7260	n:3220000
Cons ci ratio: 1.376325e-01	ci left: 2.345273e-04	ci right 2.694873e-04	k: 810	n:3220000
KS ci ratio: 7.652955e-04	ci left: 8.903469e-01	ci right 8.910288e-01	k: 2868016	n:3220000
GBF1   3220000 perm   5273 sec   (611 perm/sec)   p_kst 8.906882e-01   p_cons 2.515528e-04   p_joint 2.254658e-03

Joint ci ratio: 4.591659e-02	ci left: 2.199692e-03	ci right 2.303371e-03	k: 7271	n:3230000
Cons ci ratio: 1.374631e-01	ci left: 2.343991e-04	ci right 2.692935e-04	k: 812	n:3230000
KS ci ratio: 7.641377e-04	ci left: 8.903403e-01	ci right 8.910212e-01	k: 2876900	n:3230000
GBF1   3230000 perm   5303 sec   (609 perm/sec)   p_kst 8.906811e-01   p_cons 2.513932e-04   p_joint 2.251084e-03

Joint ci ratio: 4.582841e-02	ci left: 2.201446e-03	ci right 2.305003e-03	k: 7299	n:3240000
Cons ci ratio: 1.373786e-01	ci left: 2.339737e-04	ci right 2.687816e-04	k: 813	n:3240000
KS ci ratio: 7.629017e-04	ci left: 8.903551e-01	ci right 8.910349e-01	k: 2885853	n:3240000
GBF1   3240000 perm   5334 sec   (607 perm/sec)   p_kst 8.906954e-01   p_cons 2.509259e-04   p_joint 2.252778e-03

Joint ci ratio: 4.575012e-02	ci left: 2.202276e-03	ci right 2.305691e-03	k: 7324	n:3250000
Cons ci ratio: 1.369586e-01	ci left: 2.347394e-04	ci right 2.695458e-04	k: 818	n:3250000
KS ci ratio: 7.617006e-04	ci left: 8.903624e-01	ci right 8.910412e-01	k: 2894782	n:3250000
GBF1   3250000 perm   5363 sec   (606 perm/sec)   p_kst 8.907022e-01   p_cons 2.516923e-04   p_joint 2.253538e-03

Joint ci ratio: 4.569404e-02	ci left: 2.200979e-03	ci right 2.304203e-03	k: 7342	n:3260000
Cons ci ratio: 1.366253e-01	ci left: 2.352044e-04	ci right 2.699879e-04	k: 822	n:3260000
KS ci ratio: 7.604655e-04	ci left: 8.903798e-01	ci right 8.910575e-01	k: 2903744	n:3260000
GBF1   3260000 perm   5394 sec   (604 perm/sec)   p_kst 8.907190e-01   p_cons 2.521472e-04   p_joint 2.252147e-03

Joint ci ratio: 4.563196e-02	ci left: 2.200295e-03	ci right 2.303342e-03	k: 7362	n:3270000
Cons ci ratio: 1.362945e-01	ci left: 2.356666e-04	ci right 2.704272e-04	k: 826	n:3270000
KS ci ratio: 7.593259e-04	ci left: 8.903742e-01	ci right 8.910508e-01	k: 2912631	n:3270000
GBF1   3270000 perm   5423 sec   (603 perm/sec)   p_kst 8.907128e-01   p_cons 2.525994e-04   p_joint 2.251376e-03

Joint ci ratio: 4.573495e-02	ci left: 2.183640e-03	ci right 2.286145e-03	k: 7329	n:3280000
Cons ci ratio: 1.362945e-01	ci left: 2.349481e-04	ci right 2.696028e-04	k: 826	n:3280000
KS ci ratio: 7.581558e-04	ci left: 8.903777e-01	ci right 8.910533e-01	k: 2921548	n:3280000
GBF1   3280000 perm   5453 sec   (601 perm/sec)   p_kst 8.907159e-01   p_cons 2.518293e-04   p_joint 2.234451e-03

Joint ci ratio: 4.568204e-02	ci left: 2.182111e-03	ci right 2.284422e-03	k: 7346	n:3290000
Cons ci ratio: 1.361301e-01	ci left: 2.348211e-04	ci right 2.694119e-04	k: 828	n:3290000
KS ci ratio: 7.569994e-04	ci left: 8.903791e-01	ci right 8.910537e-01	k: 2930458	n:3290000
GBF1   3290000 perm   5483 sec   (600 perm/sec)   p_kst 8.907167e-01   p_cons 2.516717e-04   p_joint 2.232827e-03

Joint ci ratio: 4.558901e-02	ci left: 2.184485e-03	ci right 2.286694e-03	k: 7376	n:3300000
Cons ci ratio: 1.358844e-01	ci left: 2.349877e-04	ci right 2.695355e-04	k: 831	n:3300000
KS ci ratio: 7.558305e-04	ci left: 8.903850e-01	ci right 8.910585e-01	k: 2939383	n:3300000
GBF1   3300000 perm   5514 sec   (598 perm/sec)   p_kst 8.907221e-01   p_cons 2.518182e-04   p_joint 2.235152e-03

Joint ci ratio: 4.734531e-02	ci left: 2.017829e-03	ci right 2.115976e-03	k: 6840	n:3310000
Cons ci ratio: 1.354779e-01	ci left: 2.357371e-04	ci right 2.702830e-04	k: 836	n:3310000
KS ci ratio: 7.590521e-04	ci left: 8.892565e-01	ci right 8.899320e-01	k: 2944558	n:3310000
GBF1   3310000 perm   5544 sec   (597 perm/sec)   p_kst 8.895946e-01   p_cons 2.525680e-04   p_joint 2.066465e-03

Joint ci ratio: 4.727280e-02	ci left: 2.018002e-03	ci right 2.116003e-03	k: 6861	n:3320000
Cons ci ratio: 1.353163e-01	ci left: 2.356090e-04	ci right 2.700917e-04	k: 838	n:3320000
KS ci ratio: 7.578673e-04	ci left: 8.892675e-01	ci right 8.899420e-01	k: 2953489	n:3320000
GBF1   3320000 perm   5575 sec   (596 perm/sec)   p_kst 8.896051e-01   p_cons 2.524096e-04   p_joint 2.066566e-03

Joint ci ratio: 4.719720e-02	ci left: 2.018470e-03	ci right 2.116333e-03	k: 6883	n:3330000
Cons ci ratio: 1.351553e-01	ci left: 2.354818e-04	ci right 2.699016e-04	k: 840	n:3330000
KS ci ratio: 7.567112e-04	ci left: 8.892725e-01	ci right 8.899460e-01	k: 2962400	n:3330000
GBF1   3330000 perm   5606 sec   (594 perm/sec)   p_kst 8.896096e-01   p_cons 2.522523e-04   p_joint 2.066967e-03

Joint ci ratio: 4.712537e-02	ci left: 2.018640e-03	ci right 2.116358e-03	k: 6904	n:3340000
Cons ci ratio: 1.346757e-01	ci left: 2.365125e-04	ci right 2.709505e-04	k: 846	n:3340000
KS ci ratio: 7.555546e-04	ci left: 8.892790e-01	ci right 8.899515e-01	k: 2971316	n:3340000
GBF1   3340000 perm   5636 sec   (593 perm/sec)   p_kst 8.896156e-01   p_cons 2.532934e-04   p_joint 2.067066e-03

Joint ci ratio: 4.528320e-02	ci left: 2.181393e-03	ci right 2.282754e-03	k: 7476	n:3350000
Cons ci ratio: 1.344378e-01	ci left: 2.366719e-04	ci right 2.710673e-04	k: 849	n:3350000
KS ci ratio: 7.543747e-04	ci left: 8.892929e-01	ci right 8.899643e-01	k: 2980257	n:3350000
GBF1   3350000 perm   5667 sec   (591 perm/sec)   p_kst 8.896290e-01   p_cons 2.534328e-04   p_joint 2.231642e-03

Joint ci ratio: 4.569558e-02	ci left: 2.135472e-03	ci right 2.235627e-03	k: 7342	n:3360000
Cons ci ratio: 1.342012e-01	ci left: 2.368304e-04	ci right 2.711834e-04	k: 852	n:3360000
KS ci ratio: 7.532128e-04	ci left: 8.893035e-01	ci right 8.899738e-01	k: 2989187	n:3360000
GBF1   3360000 perm   5699 sec   (590 perm/sec)   p_kst 8.896390e-01   p_cons 2.535714e-04   p_joint 2.185119e-03

Joint ci ratio: 4.561176e-02	ci left: 2.137056e-03	ci right 2.237096e-03	k: 7369	n:3370000
Cons ci ratio: 1.338095e-01	ci left: 2.375616e-04	ci right 2.719121e-04	k: 857	n:3370000
KS ci ratio: 7.520574e-04	ci left: 8.893137e-01	ci right 8.899830e-01	k: 2998116	n:3370000
GBF1   3370000 perm   5730 sec   (588 perm/sec)   p_kst 8.896487e-01   p_cons 2.543027e-04   p_joint 2.186647e-03

Joint ci ratio: 4.244985e-02	ci left: 2.463141e-03	ci right 2.570259e-03	k: 8505	n:3380000
Cons ci ratio: 1.337317e-01	ci left: 2.371447e-04	ci right 2.714134e-04	k: 858	n:3380000
KS ci ratio: 7.509593e-04	ci left: 8.893102e-01	ci right 8.899785e-01	k: 3006999	n:3380000
GBF1   3380000 perm   5761 sec   (587 perm/sec)   p_kst 8.896447e-01   p_cons 2.538462e-04   p_joint 2.516272e-03

Joint ci ratio: 4.239757e-02	ci left: 2.462004e-03	ci right 2.568937e-03	k: 8526	n:3390000
Cons ci ratio: 1.336539e-01	ci left: 2.367302e-04	ci right 2.709176e-04	k: 859	n:3390000
KS ci ratio: 7.498232e-04	ci left: 8.893179e-01	ci right 8.899853e-01	k: 3015920	n:3390000
GBF1   3390000 perm   5793 sec   (585 perm/sec)   p_kst 8.896519e-01   p_cons 2.533923e-04   p_joint 2.515044e-03

Joint ci ratio: 4.146947e-02	ci left: 2.566814e-03	ci right 2.675801e-03	k: 8911	n:3400000
Cons ci ratio: 1.335763e-01	ci left: 2.363183e-04	ci right 2.704247e-04	k: 860	n:3400000
KS ci ratio: 7.487259e-04	ci left: 8.893168e-01	ci right 8.899832e-01	k: 3024811	n:3400000
GBF1   3400000 perm   5824 sec   (584 perm/sec)   p_kst 8.896503e-01   p_cons 2.529412e-04   p_joint 2.620882e-03

Joint ci ratio: 4.134423e-02	ci left: 2.574959e-03	ci right 2.683953e-03	k: 8965	n:3410000
Cons ci ratio: 1.330365e-01	ci left: 2.376096e-04	ci right 2.717529e-04	k: 867	n:3410000
KS ci ratio: 7.476446e-04	ci left: 8.893127e-01	ci right 8.899781e-01	k: 3033692	n:3410000
GBF1   3410000 perm   5856 sec   (582 perm/sec)   p_kst 8.896457e-01   p_cons 2.542522e-04   p_joint 2.629032e-03

Joint ci ratio: 4.128212e-02	ci left: 2.575243e-03	ci right 2.684082e-03	k: 8992	n:3420000
Cons ci ratio: 1.328072e-01	ci left: 2.377628e-04	ci right 2.718646e-04	k: 870	n:3420000
KS ci ratio: 7.465534e-04	ci left: 8.893125e-01	ci right 8.899769e-01	k: 3042586	n:3420000
GBF1   3420000 perm   5888 sec   (581 perm/sec)   p_kst 8.896450e-01   p_cons 2.543860e-04   p_joint 2.629240e-03

Joint ci ratio: 4.121341e-02	ci left: 2.576391e-03	ci right 2.685093e-03	k: 9022	n:3430000
Cons ci ratio: 1.322766e-01	ci left: 2.390428e-04	ci right 2.731804e-04	k: 877	n:3430000
KS ci ratio: 7.455169e-04	ci left: 8.892991e-01	ci right 8.899626e-01	k: 3051435	n:3430000
GBF1   3430000 perm   5920 sec   (579 perm/sec)   p_kst 8.896312e-01   p_cons 2.556851e-04   p_joint 2.630321e-03

Joint ci ratio: 4.115188e-02	ci left: 2.576669e-03	ci right 2.685217e-03	k: 9049	n:3440000
Cons ci ratio: 1.322014e-01	ci left: 2.386290e-04	ci right 2.726866e-04	k: 878	n:3440000
KS ci ratio: 7.444295e-04	ci left: 8.893004e-01	ci right 8.899629e-01	k: 3060334	n:3440000
GBF1   3440000 perm   5952 sec   (578 perm/sec)   p_kst 8.896320e-01   p_cons 2.552326e-04   p_joint 2.630523e-03

Joint ci ratio: 4.108836e-02	ci left: 2.577233e-03	ci right 2.685633e-03	k: 9077	n:3450000
Cons ci ratio: 1.319764e-01	ci left: 2.387782e-04	ci right 2.727945e-04	k: 881	n:3450000
KS ci ratio: 7.433667e-04	ci left: 8.892964e-01	ci right 8.899580e-01	k: 3069215	n:3450000
GBF1   3450000 perm   5984 sec   (577 perm/sec)   p_kst 8.896275e-01   p_cons 2.553623e-04   p_joint 2.631014e-03

Joint ci ratio: 4.103417e-02	ci left: 2.576650e-03	ci right 2.684879e-03	k: 9101	n:3460000
Cons ci ratio: 1.318270e-01	ci left: 2.386470e-04	ci right 2.726032e-04	k: 883	n:3460000
KS ci ratio: 7.422931e-04	ci left: 8.892965e-01	ci right 8.899572e-01	k: 3078110	n:3460000
GBF1   3460000 perm   6017 sec   (575 perm/sec)   p_kst 8.896272e-01   p_cons 2.552023e-04   p_joint 2.630347e-03

Joint ci ratio: 4.107280e-02	ci left: 2.564375e-03	ci right 2.672192e-03	k: 9084	n:3470000
Cons ci ratio: 1.318271e-01	ci left: 2.379593e-04	ci right 2.718176e-04	k: 883	n:3470000
KS ci ratio: 7.412371e-04	ci left: 8.892932e-01	ci right 8.899529e-01	k: 3086993	n:3470000
GBF1   3470000 perm   6049 sec   (574 perm/sec)   p_kst 8.896233e-01   p_cons 2.544669e-04   p_joint 2.617867e-03

Joint ci ratio: 4.102318e-02	ci left: 2.563263e-03	ci right 2.670900e-03	k: 9106	n:3480000
Cons ci ratio: 1.318271e-01	ci left: 2.372755e-04	ci right 2.710365e-04	k: 883	n:3480000
KS ci ratio: 7.401532e-04	ci left: 8.892985e-01	ci right 8.899572e-01	k: 3095906	n:3480000
GBF1   3480000 perm   6081 sec   (572 perm/sec)   p_kst 8.896282e-01   p_cons 2.537356e-04   p_joint 2.616667e-03

Joint ci ratio: 4.096250e-02	ci left: 2.563576e-03	ci right 2.671063e-03	k: 9133	n:3490000
Cons ci ratio: 1.318271e-01	ci left: 2.365956e-04	ci right 2.702599e-04	k: 883	n:3490000
KS ci ratio: 7.390783e-04	ci left: 8.893026e-01	ci right 8.899604e-01	k: 3104815	n:3490000
GBF1   3490000 perm   6114 sec   (571 perm/sec)   p_kst 8.896318e-01   p_cons 2.530086e-04   p_joint 2.616905e-03

Joint ci ratio: 4.088866e-02	ci left: 2.565583e-03	ci right 2.672956e-03	k: 9166	n:3500000
Cons ci ratio: 1.314559e-01	ci left: 2.373011e-04	ci right 2.709633e-04	k: 888	n:3500000
KS ci ratio: 7.379566e-04	ci left: 8.893204e-01	ci right 8.899772e-01	k: 3113772	n:3500000
GBF1   3500000 perm   6147 sec   (569 perm/sec)   p_kst 8.896491e-01   p_cons 2.537143e-04   p_joint 2.618857e-03

Joint ci ratio: 4.085532e-02	ci left: 2.562504e-03	ci right 2.669658e-03	k: 9181	n:3510000
Cons ci ratio: 1.313083e-01	ci left: 2.371761e-04	ci right 2.707799e-04	k: 890	n:3510000
KS ci ratio: 7.368774e-04	ci left: 8.893282e-01	ci right 8.899840e-01	k: 3122694	n:3510000
GBF1   3510000 perm   6179 sec   (568 perm/sec)   p_kst 8.896564e-01   p_cons 2.535613e-04   p_joint 2.615670e-03

Joint ci ratio: 4.100574e-02	ci left: 2.536384e-03	ci right 2.642846e-03	k: 9114	n:3520000
Cons ci ratio: 1.311611e-01	ci left: 2.370519e-04	ci right 2.705974e-04	k: 892	n:3520000
KS ci ratio: 7.358103e-04	ci left: 8.893339e-01	ci right 8.899888e-01	k: 3131609	n:3520000
GBF1   3520000 perm   6212 sec   (567 perm/sec)   p_kst 8.896616e-01   p_cons 2.534091e-04   p_joint 2.589205e-03

Joint ci ratio: 4.095412e-02	ci left: 2.535648e-03	ci right 2.641942e-03	k: 9137	n:3530000
Cons ci ratio: 1.311612e-01	ci left: 2.363803e-04	ci right 2.698309e-04	k: 892	n:3530000
KS ci ratio: 7.347372e-04	ci left: 8.893424e-01	ci right 8.899963e-01	k: 3140534	n:3530000
GBF1   3530000 perm   6244 sec   (565 perm/sec)   p_kst 8.896697e-01   p_cons 2.526912e-04   p_joint 2.588385e-03

Joint ci ratio: 4.091389e-02	ci left: 2.533517e-03	ci right 2.639615e-03	k: 9155	n:3540000
Cons ci ratio: 1.310878e-01	ci left: 2.359858e-04	ci right 2.693604e-04	k: 893	n:3540000
KS ci ratio: 7.337216e-04	ci left: 8.893367e-01	ci right 8.899898e-01	k: 3149409	n:3540000
GBF1   3540000 perm   6277 sec   (564 perm/sec)   p_kst 8.896636e-01   p_cons 2.522599e-04   p_joint 2.586158e-03

Joint ci ratio: 4.087154e-02	ci left: 2.531678e-03	ci right 2.637587e-03	k: 9174	n:3550000
Cons ci ratio: 1.309415e-01	ci left: 2.358660e-04	ci right 2.691835e-04	k: 895	n:3550000
KS ci ratio: 7.326787e-04	ci left: 8.893395e-01	ci right 8.899917e-01	k: 3158314	n:3550000
GBF1   3550000 perm   6311 sec   (563 perm/sec)   p_kst 8.896659e-01   p_cons 2.521127e-04   p_joint 2.584225e-03

Joint ci ratio: 4.081820e-02	ci left: 2.531239e-03	ci right 2.636988e-03	k: 9198	n:3560000
Cons ci ratio: 1.309415e-01	ci left: 2.352034e-04	ci right 2.684273e-04	k: 895	n:3560000
KS ci ratio: 7.316214e-04	ci left: 8.893474e-01	ci right 8.899986e-01	k: 3167237	n:3560000
GBF1   3560000 perm   6344 sec   (561 perm/sec)   p_kst 8.896733e-01   p_cons 2.514045e-04   p_joint 2.583708e-03

Joint ci ratio: 4.076064e-02	ci left: 2.531358e-03	ci right 2.636959e-03	k: 9224	n:3570000
Cons ci ratio: 1.307956e-01	ci left: 2.350865e-04	ci right 2.682540e-04	k: 897	n:3570000
KS ci ratio: 7.306176e-04	ci left: 8.893421e-01	ci right 8.899923e-01	k: 3176113	n:3570000
GBF1   3570000 perm   6377 sec   (560 perm/sec)   p_kst 8.896675e-01   p_cons 2.512605e-04   p_joint 2.583754e-03

Joint ci ratio: 4.069670e-02	ci left: 2.532305e-03	ci right 2.637776e-03	k: 9253	n:3580000
Cons ci ratio: 1.307229e-01	ci left: 2.347000e-04	ci right 2.677931e-04	k: 898	n:3580000
KS ci ratio: 7.295629e-04	ci left: 8.893516e-01	ci right 8.900009e-01	k: 3185042	n:3580000
GBF1   3580000 perm   6411 sec   (558 perm/sec)   p_kst 8.896765e-01   p_cons 2.508380e-04   p_joint 2.584637e-03

Joint ci ratio: 4.110636e-02	ci left: 2.474796e-03	ci right 2.578934e-03	k: 9070	n:3590000
Cons ci ratio: 1.305777e-01	ci left: 2.345851e-04	ci right 2.676225e-04	k: 900	n:3590000
KS ci ratio: 7.285748e-04	ci left: 8.893443e-01	ci right 8.899927e-01	k: 3193911	n:3590000
GBF1   3590000 perm   6445 sec   (557 perm/sec)   p_kst 8.896688e-01   p_cons 2.506964e-04   p_joint 2.526462e-03

Joint ci ratio: 4.035307e-02	ci left: 2.561682e-03	ci right 2.667454e-03	k: 9411	n:3600000
Cons ci ratio: 1.304331e-01	ci left: 2.344709e-04	ci right 2.674528e-04	k: 902	n:3600000
KS ci ratio: 7.275598e-04	ci left: 8.893454e-01	ci right 8.899929e-01	k: 3202810	n:3600000
GBF1   3600000 perm   6478 sec   (556 perm/sec)   p_kst 8.896694e-01   p_cons 2.505556e-04   p_joint 2.614167e-03

Joint ci ratio: 4.029745e-02	ci left: 2.561715e-03	ci right 2.667340e-03	k: 9437	n:3610000
Cons ci ratio: 1.301451e-01	ci left: 2.348933e-04	ci right 2.678561e-04	k: 906	n:3610000
KS ci ratio: 7.265675e-04	ci left: 8.893415e-01	ci right 8.899881e-01	k: 3211691	n:3610000
GBF1   3610000 perm   6511 sec   (554 perm/sec)   p_kst 8.896651e-01   p_cons 2.509695e-04   p_joint 2.614127e-03

Joint ci ratio: 4.024632e-02	ci left: 2.561202e-03	ci right 2.666668e-03	k: 9461	n:3620000
Cons ci ratio: 1.301451e-01	ci left: 2.342444e-04	ci right 2.671161e-04	k: 906	n:3620000
KS ci ratio: 7.255751e-04	ci left: 8.893387e-01	ci right 8.899845e-01	k: 3220576	n:3620000
GBF1   3620000 perm   6544 sec   (553 perm/sec)   p_kst 8.896619e-01   p_cons 2.502762e-04   p_joint 2.613536e-03

Joint ci ratio: 4.018690e-02	ci left: 2.561782e-03	ci right 2.667113e-03	k: 9489	n:3630000
Cons ci ratio: 1.300735e-01	ci left: 2.338657e-04	ci right 2.666647e-04	k: 907	n:3630000
KS ci ratio: 7.246194e-04	ci left: 8.893271e-01	ci right 8.899720e-01	k: 3229429	n:3630000
GBF1   3630000 perm   6578 sec   (552 perm/sec)   p_kst 8.896499e-01   p_cons 2.498623e-04   p_joint 2.614050e-03

Joint ci ratio: 4.013196e-02	ci left: 2.561815e-03	ci right 2.667001e-03	k: 9515	n:3640000
Cons ci ratio: 1.300735e-01	ci left: 2.332232e-04	ci right 2.659321e-04	k: 907	n:3640000
KS ci ratio: 7.236167e-04	ci left: 8.893293e-01	ci right 8.899734e-01	k: 3238332	n:3640000
GBF1   3640000 perm   6611 sec   (551 perm/sec)   p_kst 8.896516e-01   p_cons 2.491758e-04   p_joint 2.614011e-03

Joint ci ratio: 4.006462e-02	ci left: 2.563476e-03	ci right 2.668549e-03	k: 9547	n:3650000
Cons ci ratio: 1.298592e-01	ci left: 2.333794e-04	ci right 2.660522e-04	k: 910	n:3650000
KS ci ratio: 7.226152e-04	ci left: 8.893324e-01	ci right 8.899755e-01	k: 3247238	n:3650000
GBF1   3650000 perm   6644 sec   (549 perm/sec)   p_kst 8.896542e-01   p_cons 2.493151e-04   p_joint 2.615616e-03

Joint ci ratio: 3.999971e-02	ci left: 2.564857e-03	ci right 2.669812e-03	k: 9578	n:3660000
Cons ci ratio: 1.295042e-01	ci left: 2.340635e-04	ci right 2.667357e-04	k: 915	n:3660000
KS ci ratio: 7.216540e-04	ci left: 8.893255e-01	ci right 8.899678e-01	k: 3256108	n:3660000
GBF1   3660000 perm   6678 sec   (548 perm/sec)   p_kst 8.896470e-01   p_cons 2.500000e-04   p_joint 2.616940e-03

Joint ci ratio: 4.020872e-02	ci left: 2.531162e-03	ci right 2.635293e-03	k: 9479	n:3670000
Cons ci ratio: 1.294336e-01	ci left: 2.336894e-04	ci right 2.662902e-04	k: 916	n:3670000
KS ci ratio: 7.206196e-04	ci left: 8.893398e-01	ci right 8.899811e-01	k: 3265055	n:3670000
GBF1   3670000 perm   6711 sec   (547 perm/sec)   p_kst 8.896608e-01   p_cons 2.495913e-04   p_joint 2.582834e-03

Joint ci ratio: 4.016428e-02	ci left: 2.529933e-03	ci right 2.633895e-03	k: 9500	n:3680000
Cons ci ratio: 1.293631e-01	ci left: 2.333173e-04	ci right 2.658471e-04	k: 917	n:3680000
KS ci ratio: 7.196494e-04	ci left: 8.893376e-01	ci right 8.899781e-01	k: 3273942	n:3680000
GBF1   3680000 perm   6745 sec   (546 perm/sec)   p_kst 8.896582e-01   p_cons 2.491848e-04   p_joint 2.581522e-03

Joint ci ratio: 4.010100e-02	ci left: 2.531126e-03	ci right 2.634969e-03	k: 9530	n:3690000
Cons ci ratio: 1.292927e-01	ci left: 2.329473e-04	ci right 2.654064e-04	k: 918	n:3690000
KS ci ratio: 7.186663e-04	ci left: 8.893400e-01	ci right 8.899797e-01	k: 3282846	n:3690000
GBF1   3690000 perm   6778 sec   (544 perm/sec)   p_kst 8.896602e-01   p_cons 2.487805e-04   p_joint 2.582656e-03

Joint ci ratio: 4.006743e-02	ci left: 2.528566e-03	ci right 2.632215e-03	k: 9546	n:3700000
Cons ci ratio: 1.292928e-01	ci left: 2.323177e-04	ci right 2.646891e-04	k: 918	n:3700000
KS ci ratio: 7.177000e-04	ci left: 8.893390e-01	ci right 8.899777e-01	k: 3291737	n:3700000
GBF1   3700000 perm   6812 sec   (543 perm/sec)   p_kst 8.896586e-01   p_cons 2.481081e-04   p_joint 2.580000e-03

Joint ci ratio: 4.003395e-02	ci left: 2.526020e-03	ci right 2.629476e-03	k: 9562	n:3710000
Cons ci ratio: 1.291523e-01	ci left: 2.322131e-04	ci right 2.645321e-04	k: 920	n:3710000
KS ci ratio: 7.166785e-04	ci left: 8.893541e-01	ci right 8.899919e-01	k: 3300688	n:3710000
GBF1   3710000 perm   6846 sec   (542 perm/sec)   p_kst 8.896733e-01   p_cons 2.479784e-04   p_joint 2.577358e-03

Joint ci ratio: 3.998800e-02	ci left: 2.525084e-03	ci right 2.628381e-03	k: 9584	n:3720000
Cons ci ratio: 1.291524e-01	ci left: 2.315889e-04	ci right 2.638210e-04	k: 920	n:3720000
KS ci ratio: 7.156908e-04	ci left: 8.893610e-01	ci right 8.899980e-01	k: 3309609	n:3720000
GBF1   3720000 perm   6880 sec   (541 perm/sec)   p_kst 8.896798e-01   p_cons 2.473118e-04   p_joint 2.576344e-03

Joint ci ratio: 3.992555e-02	ci left: 2.526277e-03	ci right 2.629457e-03	k: 9614	n:3730000
Cons ci ratio: 1.290124e-01	ci left: 2.314869e-04	ci right 2.636672e-04	k: 922	n:3730000
KS ci ratio: 7.147228e-04	ci left: 8.893637e-01	ci right 8.899998e-01	k: 3318514	n:3730000
GBF1   3730000 perm   6914 sec   (539 perm/sec)   p_kst 8.896820e-01   p_cons 2.471850e-04   p_joint 2.577480e-03

Joint ci ratio: 3.985717e-02	ci left: 2.528258e-03	ci right 2.631338e-03	k: 9647	n:3740000
Cons ci ratio: 1.288032e-01	ci left: 2.316442e-04	ci right 2.637902e-04	k: 925	n:3740000
KS ci ratio: 7.138307e-04	ci left: 8.893465e-01	ci right 8.899818e-01	k: 3327345	n:3740000
GBF1   3740000 perm   6948 sec   (538 perm/sec)   p_kst 8.896644e-01   p_cons 2.473262e-04   p_joint 2.579412e-03

Joint ci ratio: 3.980770e-02	ci left: 2.527852e-03	ci right 2.630785e-03	k: 9671	n:3750000
Cons ci ratio: 1.288033e-01	ci left: 2.310265e-04	ci right 2.630868e-04	k: 925	n:3750000
KS ci ratio: 7.129108e-04	ci left: 8.893379e-01	ci right 8.899724e-01	k: 3336208	n:3750000
GBF1   3750000 perm   6982 sec   (537 perm/sec)   p_kst 8.896555e-01   p_cons 2.466667e-04   p_joint 2.578933e-03

Joint ci ratio: 3.973582e-02	ci left: 2.530345e-03	ci right 2.633189e-03	k: 9706	n:3760000
Cons ci ratio: 1.285951e-01	ci left: 2.311843e-04	ci right 2.632107e-04	k: 928	n:3760000
KS ci ratio: 7.120466e-04	ci left: 8.893150e-01	ci right 8.899487e-01	k: 3345017	n:3760000
GBF1   3760000 perm   7016 sec   (536 perm/sec)   p_kst 8.896322e-01   p_cons 2.468085e-04   p_joint 2.581383e-03

Joint ci ratio: 3.967658e-02	ci left: 2.531249e-03	ci right 2.633973e-03	k: 9735	n:3770000
Cons ci ratio: 1.284569e-01	ci left: 2.310845e-04	ci right 2.630600e-04	k: 930	n:3770000
KS ci ratio: 7.111048e-04	ci left: 8.893146e-01	ci right 8.899474e-01	k: 3353910	n:3770000
GBF1   3770000 perm   7051 sec   (535 perm/sec)   p_kst 8.896313e-01   p_cons 2.466844e-04   p_joint 2.582228e-03

Joint ci ratio: 3.961557e-02	ci left: 2.532411e-03	ci right 2.635020e-03	k: 9765	n:3780000
Cons ci ratio: 1.280449e-01	ci left: 2.320095e-04	ci right 2.640023e-04	k: 936	n:3780000
KS ci ratio: 7.101801e-04	ci left: 8.893104e-01	ci right 8.899424e-01	k: 3362789	n:3780000
GBF1   3780000 perm   7086 sec   (533 perm/sec)   p_kst 8.896267e-01   p_cons 2.476190e-04   p_joint 2.583333e-03

Joint ci ratio: 3.955889e-02	ci left: 2.533044e-03	ci right 2.635529e-03	k: 9793	n:3790000
Cons ci ratio: 1.276369e-01	ci left: 2.329299e-04	ci right 2.649394e-04	k: 942	n:3790000
KS ci ratio: 7.092152e-04	ci left: 8.893184e-01	ci right 8.899496e-01	k: 3371714	n:3790000
GBF1   3790000 perm   7120 sec   (532 perm/sec)   p_kst 8.896343e-01   p_cons 2.485488e-04   p_joint 2.583905e-03

Joint ci ratio: 3.950447e-02	ci left: 2.533413e-03	ci right 2.635769e-03	k: 9820	n:3800000
Cons ci ratio: 1.275693e-01	ci left: 2.325717e-04	ci right 2.645138e-04	k: 943	n:3800000
KS ci ratio: 7.082419e-04	ci left: 8.893298e-01	ci right 8.899601e-01	k: 3380652	n:3800000
GBF1   3800000 perm   7155 sec   (531 perm/sec)   p_kst 8.896453e-01   p_cons 2.481579e-04   p_joint 2.584211e-03

Joint ci ratio: 3.946032e-02	ci left: 2.532481e-03	ci right 2.634682e-03	k: 9842	n:3810000
Cons ci ratio: 1.275693e-01	ci left: 2.319612e-04	ci right 2.638195e-04	k: 943	n:3810000
KS ci ratio: 7.073151e-04	ci left: 8.893293e-01	ci right 8.899588e-01	k: 3389545	n:3810000
GBF1   3810000 perm   7190 sec   (530 perm/sec)   p_kst 8.896444e-01   p_cons 2.475066e-04   p_joint 2.583202e-03

Joint ci ratio: 3.940630e-02	ci left: 2.532849e-03	ci right 2.634923e-03	k: 9869	n:3820000
Cons ci ratio: 1.272999e-01	ci left: 2.323677e-04	ci right 2.642094e-04	k: 947	n:3820000
KS ci ratio: 7.064126e-04	ci left: 8.893231e-01	ci right 8.899518e-01	k: 3398416	n:3820000
GBF1   3820000 perm   7225 sec   (529 perm/sec)   p_kst 8.896377e-01   p_cons 2.479058e-04   p_joint 2.583508e-03

Joint ci ratio: 3.935051e-02	ci left: 2.533475e-03	ci right 2.635426e-03	k: 9897	n:3830000
Cons ci ratio: 1.270989e-01	ci left: 2.325194e-04	ci right 2.643277e-04	k: 950	n:3830000
KS ci ratio: 7.054770e-04	ci left: 8.893270e-01	ci right 8.899549e-01	k: 3407326	n:3830000
GBF1   3830000 perm   7260 sec   (528 perm/sec)   p_kst 8.896413e-01   p_cons 2.480418e-04   p_joint 2.584073e-03

Joint ci ratio: 3.931283e-02	ci left: 2.531777e-03	ci right 2.633559e-03	k: 9916	n:3840000
Cons ci ratio: 1.269655e-01	ci left: 2.324182e-04	ci right 2.641767e-04	k: 952	n:3840000
KS ci ratio: 7.045741e-04	ci left: 8.893229e-01	ci right 8.899500e-01	k: 3416205	n:3840000
GBF1   3840000 perm   7295 sec   (526 perm/sec)   p_kst 8.896367e-01   p_cons 2.479167e-04   p_joint 2.582292e-03

Joint ci ratio: 3.937871e-02	ci left: 2.516713e-03	ci right 2.618063e-03	k: 9883	n:3850000
Cons ci ratio: 1.267661e-01	ci left: 2.325690e-04	ci right 2.642945e-04	k: 955	n:3850000
KS ci ratio: 7.036356e-04	ci left: 8.893297e-01	ci right 8.899559e-01	k: 3425126	n:3850000
GBF1   3850000 perm   7331 sec   (525 perm/sec)   p_kst 8.896431e-01   p_cons 2.480519e-04   p_joint 2.567013e-03

Joint ci ratio: 3.933896e-02	ci left: 2.515323e-03	ci right 2.616513e-03	k: 9903	n:3860000
Cons ci ratio: 1.265677e-01	ci left: 2.327190e-04	ci right 2.644116e-04	k: 958	n:3860000
KS ci ratio: 7.027239e-04	ci left: 8.893300e-01	ci right 8.899554e-01	k: 3434022	n:3860000
GBF1   3860000 perm   7366 sec   (524 perm/sec)   p_kst 8.896430e-01   p_cons 2.481865e-04   p_joint 2.565544e-03

Joint ci ratio: 3.941697e-02	ci left: 2.498845e-03	ci right 2.599576e-03	k: 9864	n:3870000
Cons ci ratio: 1.263701e-01	ci left: 2.328684e-04	ci right 2.645281e-04	k: 961	n:3870000
KS ci ratio: 7.018306e-04	ci left: 8.893262e-01	ci right 8.899508e-01	k: 3442902	n:3870000
GBF1   3870000 perm   7401 sec   (523 perm/sec)   p_kst 8.896388e-01   p_cons 2.483204e-04   p_joint 2.548837e-03

Joint ci ratio: 3.977440e-02	ci left: 2.447492e-03	ci right 2.547067e-03	k: 9688	n:3880000
Cons ci ratio: 1.263045e-01	ci left: 2.325178e-04	ci right 2.641122e-04	k: 962	n:3880000
KS ci ratio: 7.009462e-04	ci left: 8.893208e-01	ci right 8.899446e-01	k: 3451776	n:3880000
GBF1   3880000 perm   7437 sec   (522 perm/sec)   p_kst 8.896330e-01   p_cons 2.479381e-04   p_joint 2.496907e-03

Joint ci ratio: 3.972933e-02	ci left: 2.446799e-03	ci right 2.546231e-03	k: 9710	n:3890000
Cons ci ratio: 1.259779e-01	ci left: 2.331648e-04	ci right 2.647591e-04	k: 967	n:3890000
KS ci ratio: 7.000688e-04	ci left: 8.893144e-01	ci right 8.899375e-01	k: 3460646	n:3890000
GBF1   3890000 perm   7472 sec   (521 perm/sec)   p_kst 8.896262e-01   p_cons 2.485861e-04   p_joint 2.496144e-03

Joint ci ratio: 3.967625e-02	ci left: 2.447126e-03	ci right 2.546435e-03	k: 9736	n:3900000
Cons ci ratio: 1.259779e-01	ci left: 2.325670e-04	ci right 2.640803e-04	k: 967	n:3900000
KS ci ratio: 6.991855e-04	ci left: 8.893106e-01	ci right 8.899329e-01	k: 3469526	n:3900000
GBF1   3900000 perm   7507 sec   (519 perm/sec)   p_kst 8.896221e-01   p_cons 2.479487e-04   p_joint 2.496410e-03

Joint ci ratio: 3.962134e-02	ci left: 2.447704e-03	ci right 2.546897e-03	k: 9763	n:3910000
Cons ci ratio: 1.255248e-01	ci left: 2.337062e-04	ci right 2.652514e-04	k: 974	n:3910000
KS ci ratio: 6.982701e-04	ci left: 8.893169e-01	ci right 8.899383e-01	k: 3478445	n:3910000
GBF1   3910000 perm   7543 sec   (518 perm/sec)   p_kst 8.896279e-01   p_cons 2.491049e-04   p_joint 2.496931e-03

Joint ci ratio: 3.851605e-02	ci left: 2.584694e-03	ci right 2.686451e-03	k: 10330	n:3920000
Cons ci ratio: 1.253321e-01	ci left: 2.338513e-04	ci right 2.653641e-04	k: 977	n:3920000
KS ci ratio: 6.973565e-04	ci left: 8.893236e-01	ci right 8.899442e-01	k: 3487366	n:3920000
GBF1   3920000 perm   7578 sec   (517 perm/sec)   p_kst 8.896342e-01   p_cons 2.492347e-04   p_joint 2.635204e-03

Joint ci ratio: 3.847327e-02	ci left: 2.583913e-03	ci right 2.685524e-03	k: 10353	n:3930000
Cons ci ratio: 1.251403e-01	ci left: 2.339957e-04	ci right 2.654761e-04	k: 980	n:3930000
KS ci ratio: 6.965033e-04	ci left: 8.893142e-01	ci right 8.899341e-01	k: 3496224	n:3930000
GBF1   3930000 perm   7614 sec   (516 perm/sec)   p_kst 8.896244e-01   p_cons 2.493639e-04   p_joint 2.634351e-03

Joint ci ratio: 3.900968e-02	ci left: 2.506473e-03	ci right 2.606443e-03	k: 10071	n:3940000
Cons ci ratio: 1.248860e-01	ci left: 2.343852e-04	ci right 2.658493e-04	k: 984	n:3940000
KS ci ratio: 6.956416e-04	ci left: 8.893082e-01	ci right 8.899273e-01	k: 3505095	n:3940000
GBF1   3940000 perm   7651 sec   (515 perm/sec)   p_kst 8.896180e-01   p_cons 2.497462e-04   p_joint 2.556091e-03

Joint ci ratio: 3.893816e-02	ci left: 2.509403e-03	ci right 2.609303e-03	k: 10108	n:3950000
Cons ci ratio: 1.246962e-01	ci left: 2.345277e-04	ci right 2.659594e-04	k: 987	n:3950000
KS ci ratio: 6.947436e-04	ci left: 8.893133e-01	ci right 8.899316e-01	k: 3514010	n:3950000
GBF1   3950000 perm   7687 sec   (514 perm/sec)   p_kst 8.896228e-01   p_cons 2.498734e-04   p_joint 2.558987e-03

Joint ci ratio: 3.887857e-02	ci left: 2.510818e-03	ci right 2.610618e-03	k: 10139	n:3960000
Cons ci ratio: 1.245702e-01	ci left: 2.344247e-04	ci right 2.658086e-04	k: 989	n:3960000
KS ci ratio: 6.938687e-04	ci left: 8.893129e-01	ci right 8.899304e-01	k: 3522903	n:3960000
GBF1   3960000 perm   7723 sec   (513 perm/sec)   p_kst 8.896220e-01   p_cons 2.497475e-04   p_joint 2.560354e-03

Joint ci ratio: 3.752802e-02	ci left: 2.689366e-03	ci right 2.792470e-03	k: 10880	n:3970000
Cons ci ratio: 1.241320e-01	ci left: 2.355426e-04	ci right 2.669571e-04	k: 996	n:3970000
KS ci ratio: 6.930069e-04	ci left: 8.893097e-01	ci right 8.899265e-01	k: 3531785	n:3970000
GBF1   3970000 perm   7759 sec   (512 perm/sec)   p_kst 8.896184e-01   p_cons 2.508816e-04   p_joint 2.740554e-03

Joint ci ratio: 3.763756e-02	ci left: 2.666928e-03	ci right 2.769476e-03	k: 10817	n:3980000
Cons ci ratio: 1.240699e-01	ci left: 2.351942e-04	ci right 2.665454e-04	k: 997	n:3980000
KS ci ratio: 6.921280e-04	ci left: 8.893123e-01	ci right 8.899283e-01	k: 3540690	n:3980000
GBF1   3980000 perm   7795 sec   (511 perm/sec)   p_kst 8.896206e-01   p_cons 2.505025e-04   p_joint 2.717839e-03

Joint ci ratio: 3.759242e-02	ci left: 2.666699e-03	ci right 2.769113e-03	k: 10843	n:3990000
Cons ci ratio: 1.240699e-01	ci left: 2.346048e-04	ci right 2.658774e-04	k: 997	n:3990000
KS ci ratio: 6.912197e-04	ci left: 8.893242e-01	ci right 8.899394e-01	k: 3549632	n:3990000
GBF1   3990000 perm   7832 sec   (509 perm/sec)   p_kst 8.896321e-01   p_cons 2.498747e-04   p_joint 2.717544e-03

Joint ci ratio: 3.759081e-02	ci left: 2.660279e-03	ci right 2.762443e-03	k: 10844	n:4000000
Cons ci ratio: 1.239458e-01	ci left: 2.345028e-04	ci right 2.657282e-04	k: 999	n:4000000
KS ci ratio: 6.903598e-04	ci left: 8.893233e-01	ci right 8.899377e-01	k: 3558523	n:4000000
GBF1   4000000 perm   7868 sec   (508 perm/sec)   p_kst 8.896308e-01   p_cons 2.497500e-04   p_joint 2.711000e-03

Joint ci ratio: 3.754064e-02	ci left: 2.660809e-03	ci right 2.762853e-03	k: 10873	n:4010000
Cons ci ratio: 1.238220e-01	ci left: 2.344013e-04	ci right 2.655797e-04	k: 1001	n:4010000
KS ci ratio: 6.894979e-04	ci left: 8.893238e-01	ci right 8.899375e-01	k: 3567420	n:4010000
GBF1   4010000 perm   7905 sec   (507 perm/sec)   p_kst 8.896309e-01   p_cons 2.496259e-04   p_joint 2.711471e-03

Joint ci ratio: 3.763284e-02	ci left: 2.641130e-03	ci right 2.742673e-03	k: 10820	n:4020000
Cons ci ratio: 1.237603e-01	ci left: 2.340592e-04	ci right 2.651755e-04	k: 1002	n:4020000
KS ci ratio: 6.886871e-04	ci left: 8.893107e-01	ci right 8.899236e-01	k: 3576262	n:4020000
GBF1   4020000 perm   7942 sec   (506 perm/sec)   p_kst 8.896174e-01   p_cons 2.492537e-04   p_joint 2.691542e-03

Joint ci ratio: 3.759467e-02	ci left: 2.639984e-03	ci right 2.741378e-03	k: 10842	n:4030000
Cons ci ratio: 1.235756e-01	ci left: 2.341998e-04	ci right 2.652849e-04	k: 1005	n:4030000
KS ci ratio: 6.878175e-04	ci left: 8.893152e-01	ci right 8.899274e-01	k: 3585175	n:4030000
GBF1   4030000 perm   7979 sec   (505 perm/sec)   p_kst 8.896216e-01   p_cons 2.493797e-04   p_joint 2.690323e-03

Joint ci ratio: 3.755834e-02	ci left: 2.638598e-03	ci right 2.739839e-03	k: 10863	n:4040000
Cons ci ratio: 1.234530e-01	ci left: 2.340999e-04	ci right 2.651386e-04	k: 1007	n:4040000
KS ci ratio: 6.869572e-04	ci left: 8.893180e-01	ci right 8.899294e-01	k: 3594081	n:4040000
GBF1   4040000 perm   8015 sec   (504 perm/sec)   p_kst 8.896240e-01   p_cons 2.492574e-04   p_joint 2.688861e-03

Joint ci ratio: 3.751176e-02	ci left: 2.638687e-03	ci right 2.739804e-03	k: 10890	n:4050000
Cons ci ratio: 1.232697e-01	ci left: 2.342397e-04	ci right 2.652476e-04	k: 1010	n:4050000
KS ci ratio: 6.860683e-04	ci left: 8.893300e-01	ci right 8.899406e-01	k: 3603024	n:4050000
GBF1   4050000 perm   8051 sec   (503 perm/sec)   p_kst 8.896356e-01   p_cons 2.493827e-04   p_joint 2.688889e-03

Joint ci ratio: 3.746707e-02	ci left: 2.638532e-03	ci right 2.739519e-03	k: 10916	n:4060000
Cons ci ratio: 1.231479e-01	ci left: 2.341402e-04	ci right 2.651020e-04	k: 1012	n:4060000
KS ci ratio: 6.852154e-04	ci left: 8.893325e-01	ci right 8.899423e-01	k: 3611929	n:4060000
GBF1   4060000 perm   8089 sec   (502 perm/sec)   p_kst 8.896377e-01   p_cons 2.492611e-04   p_joint 2.688670e-03

Joint ci ratio: 3.743454e-02	ci left: 2.636674e-03	ci right 2.737500e-03	k: 10935	n:4070000
Cons ci ratio: 1.230872e-01	ci left: 2.338031e-04	ci right 2.647039e-04	k: 1013	n:4070000
KS ci ratio: 6.843863e-04	ci left: 8.893291e-01	ci right 8.899382e-01	k: 3620810	n:4070000
GBF1   4070000 perm   8126 sec   (501 perm/sec)   p_kst 8.896339e-01   p_cons 2.488943e-04   p_joint 2.686732e-03

Joint ci ratio: 3.738329e-02	ci left: 2.637495e-03	ci right 2.738212e-03	k: 10965	n:4080000
Cons ci ratio: 1.230266e-01	ci left: 2.334676e-04	ci right 2.643078e-04	k: 1014	n:4080000
KS ci ratio: 6.836250e-04	ci left: 8.893070e-01	ci right 8.899154e-01	k: 3629615	n:4080000
GBF1   4080000 perm   8163 sec   (500 perm/sec)   p_kst 8.896115e-01   p_cons 2.485294e-04   p_joint 2.687500e-03

Joint ci ratio: 3.734757e-02	ci left: 2.636133e-03	ci right 2.736700e-03	k: 10986	n:4090000
Cons ci ratio: 1.229056e-01	ci left: 2.333707e-04	ci right 2.641656e-04	k: 1016	n:4090000
KS ci ratio: 6.827871e-04	ci left: 8.893079e-01	ci right 8.899155e-01	k: 3638513	n:4090000
GBF1   4090000 perm   8201 sec   (499 perm/sec)   p_kst 8.896120e-01   p_cons 2.484108e-04   p_joint 2.686064e-03

Joint ci ratio: 3.730007e-02	ci left: 2.636469e-03	ci right 2.736918e-03	k: 11014	n:4100000
Cons ci ratio: 1.227247e-01	ci left: 2.335107e-04	ci right 2.642755e-04	k: 1019	n:4100000
KS ci ratio: 6.819346e-04	ci left: 8.893138e-01	ci right 8.899207e-01	k: 3647432	n:4100000
GBF1   4100000 perm   8238 sec   (498 perm/sec)   p_kst 8.896176e-01   p_cons 2.485366e-04   p_joint 2.686341e-03

Joint ci ratio: 3.737853e-02	ci left: 2.618966e-03	ci right 2.718963e-03	k: 10968	n:4110000
Cons ci ratio: 1.225446e-01	ci left: 2.336501e-04	ci right 2.643848e-04	k: 1022	n:4110000
KS ci ratio: 6.811038e-04	ci left: 8.893144e-01	ci right 8.899206e-01	k: 3656329	n:4110000
GBF1   4110000 perm   8275 sec   (497 perm/sec)   p_kst 8.896178e-01   p_cons 2.486618e-04   p_joint 2.668613e-03

Joint ci ratio: 3.733261e-02	ci left: 2.619102e-03	ci right 2.718978e-03	k: 10995	n:4120000
Cons ci ratio: 1.225446e-01	ci left: 2.330830e-04	ci right 2.637431e-04	k: 1022	n:4120000
KS ci ratio: 6.802760e-04	ci left: 8.893150e-01	ci right 8.899204e-01	k: 3665226	n:4120000
GBF1   4120000 perm   8312 sec   (496 perm/sec)   p_kst 8.896180e-01   p_cons 2.480583e-04   p_joint 2.668689e-03

Joint ci ratio: 3.730213e-02	ci left: 2.617078e-03	ci right 2.716793e-03	k: 11013	n:4130000
Cons ci ratio: 1.224250e-01	ci left: 2.329881e-04	ci right 2.636035e-04	k: 1024	n:4130000
KS ci ratio: 6.794672e-04	ci left: 8.893109e-01	ci right 8.899156e-01	k: 3674104	n:4130000
GBF1   4130000 perm   8350 sec   (495 perm/sec)   p_kst 8.896136e-01   p_cons 2.479419e-04   p_joint 2.666586e-03

Joint ci ratio: 3.748181e-02	ci left: 2.585630e-03	ci right 2.684633e-03	k: 10908	n:4140000
Cons ci ratio: 1.223654e-01	ci left: 2.326594e-04	ci right 2.632158e-04	k: 1025	n:4140000
KS ci ratio: 6.786487e-04	ci left: 8.893105e-01	ci right 8.899145e-01	k: 3682997	n:4140000
GBF1   4140000 perm   8387 sec   (494 perm/sec)   p_kst 8.896128e-01   p_cons 2.475845e-04   p_joint 2.634783e-03

Joint ci ratio: 3.721776e-02	ci left: 2.616401e-03	ci right 2.715861e-03	k: 11063	n:4150000
Cons ci ratio: 1.221869e-01	ci left: 2.327996e-04	ci right 2.633265e-04	k: 1028	n:4150000
KS ci ratio: 6.778539e-04	ci left: 8.893041e-01	ci right 8.899074e-01	k: 3691865	n:4150000
GBF1   4150000 perm   8425 sec   (493 perm/sec)   p_kst 8.896060e-01   p_cons 2.477108e-04   p_joint 2.665783e-03

Joint ci ratio: 3.716571e-02	ci left: 2.617495e-03	ci right 2.716854e-03	k: 11094	n:4160000
Cons ci ratio: 1.220683e-01	ci left: 2.327061e-04	ci right 2.631890e-04	k: 1030	n:4160000
KS ci ratio: 6.770313e-04	ci left: 8.893066e-01	ci right 8.899092e-01	k: 3700770	n:4160000
GBF1   4160000 perm   8463 sec   (492 perm/sec)   p_kst 8.896082e-01   p_cons 2.475962e-04   p_joint 2.666827e-03

Joint ci ratio: 3.712057e-02	ci left: 2.617632e-03	ci right 2.716873e-03	k: 11121	n:4170000
Cons ci ratio: 1.220092e-01	ci left: 2.323805e-04	ci right 2.628049e-04	k: 1031	n:4170000
KS ci ratio: 6.762232e-04	ci left: 8.893058e-01	ci right 8.899076e-01	k: 3709661	n:4170000
GBF1   4170000 perm   8500 sec   (491 perm/sec)   p_kst 8.896070e-01   p_cons 2.472422e-04   p_joint 2.666906e-03

Joint ci ratio: 3.708393e-02	ci left: 2.616584e-03	ci right 2.715686e-03	k: 11143	n:4180000
Cons ci ratio: 1.218911e-01	ci left: 2.322884e-04	ci right 2.626693e-04	k: 1033	n:4180000
KS ci ratio: 6.753654e-04	ci left: 8.893203e-01	ci right 8.899213e-01	k: 3718616	n:4180000
GBF1   4180000 perm   8538 sec   (490 perm/sec)   p_kst 8.896211e-01   p_cons 2.471292e-04   p_joint 2.665789e-03

Joint ci ratio: 3.706238e-02	ci left: 2.613413e-03	ci right 2.712336e-03	k: 11156	n:4190000
Cons ci ratio: 1.218322e-01	ci left: 2.319654e-04	ci right 2.622883e-04	k: 1034	n:4190000
KS ci ratio: 6.745788e-04	ci left: 8.893148e-01	ci right 8.899152e-01	k: 3727488	n:4190000
GBF1   4190000 perm   8576 sec   (489 perm/sec)   p_kst 8.896153e-01   p_cons 2.467780e-04   p_joint 2.662530e-03

Joint ci ratio: 3.689543e-02	ci left: 2.631017e-03	ci right 2.730147e-03	k: 11257	n:4200000
Cons ci ratio: 1.215975e-01	ci left: 2.323365e-04	ci right 2.626452e-04	k: 1038	n:4200000
KS ci ratio: 6.737452e-04	ci left: 8.893240e-01	ci right 8.899236e-01	k: 3736421	n:4200000
GBF1   4200000 perm   8615 sec   (488 perm/sec)   p_kst 8.896240e-01   p_cons 2.471429e-04   p_joint 2.680238e-03

Joint ci ratio: 3.686437e-02	ci left: 2.629239e-03	ci right 2.728217e-03	k: 11276	n:4210000
Cons ci ratio: 1.215390e-01	ci left: 2.320150e-04	ci right 2.622661e-04	k: 1039	n:4210000
KS ci ratio: 6.729496e-04	ci left: 8.893228e-01	ci right 8.899217e-01	k: 3745311	n:4210000
GBF1   4210000 perm   8654 sec   (486 perm/sec)   p_kst 8.896226e-01   p_cons 2.467933e-04   p_joint 2.678385e-03

Joint ci ratio: 3.681542e-02	ci left: 2.630052e-03	ci right 2.728927e-03	k: 11306	n:4220000
Cons ci ratio: 1.214806e-01	ci left: 2.316949e-04	ci right 2.618888e-04	k: 1040	n:4220000
KS ci ratio: 6.721349e-04	ci left: 8.893281e-01	ci right 8.899263e-01	k: 3754228	n:4220000
GBF1   4220000 perm   8692 sec   (485 perm/sec)   p_kst 8.896275e-01   p_cons 2.464455e-04   p_joint 2.679147e-03

Joint ci ratio: 3.698813e-02	ci left: 2.599240e-03	ci right 2.697424e-03	k: 11201	n:4230000
Cons ci ratio: 1.212479e-01	ci left: 2.320641e-04	ci right 2.622439e-04	k: 1044	n:4230000
KS ci ratio: 6.713709e-04	ci left: 8.893194e-01	ci right 8.899169e-01	k: 3763086	n:4230000
GBF1   4230000 perm   8731 sec   (485 perm/sec)   p_kst 8.896184e-01   p_cons 2.468085e-04   p_joint 2.647991e-03

Joint ci ratio: 3.695519e-02	ci left: 2.597783e-03	ci right 2.695823e-03	k: 11221	n:4240000
Cons ci ratio: 1.212479e-01	ci left: 2.315168e-04	ci right 2.616255e-04	k: 1044	n:4240000
KS ci ratio: 6.705418e-04	ci left: 8.893306e-01	ci right 8.899274e-01	k: 3772028	n:4240000
GBF1   4240000 perm   8769 sec   (484 perm/sec)   p_kst 8.896292e-01   p_cons 2.462264e-04   p_joint 2.646462e-03

Joint ci ratio: 3.689765e-02	ci left: 2.599830e-03	ci right 2.697791e-03	k: 11256	n:4250000
Cons ci ratio: 1.211321e-01	ci left: 2.314284e-04	ci right 2.614947e-04	k: 1046	n:4250000
KS ci ratio: 6.697712e-04	ci left: 8.893255e-01	ci right 8.899215e-01	k: 3780901	n:4250000
GBF1   4250000 perm   8808 sec   (483 perm/sec)   p_kst 8.896238e-01   p_cons 2.461176e-04   p_joint 2.648471e-03

Joint ci ratio: 3.663762e-02	ci left: 2.630941e-03	ci right 2.729361e-03	k: 11416	n:4260000
Cons ci ratio: 1.209589e-01	ci left: 2.315680e-04	ci right 2.616064e-04	k: 1049	n:4260000
KS ci ratio: 6.689968e-04	ci left: 8.893222e-01	ci right 8.899176e-01	k: 3789782	n:4260000
GBF1   4260000 perm   8847 sec   (482 perm/sec)   p_kst 8.896202e-01   p_cons 2.462441e-04   p_joint 2.679812e-03

Joint ci ratio: 3.659438e-02	ci left: 2.631045e-03	ci right 2.729351e-03	k: 11443	n:4270000
Cons ci ratio: 1.209014e-01	ci left: 2.312528e-04	ci right 2.612350e-04	k: 1050	n:4270000
KS ci ratio: 6.682059e-04	ci left: 8.893246e-01	ci right 8.899193e-01	k: 3798687	n:4270000
GBF1   4270000 perm   8886 sec   (481 perm/sec)   p_kst 8.896222e-01   p_cons 2.459016e-04   p_joint 2.679859e-03

Joint ci ratio: 3.656087e-02	ci left: 2.629759e-03	ci right 2.727925e-03	k: 11464	n:4280000
Cons ci ratio: 1.207865e-01	ci left: 2.311656e-04	ci right 2.611061e-04	k: 1052	n:4280000
KS ci ratio: 6.674258e-04	ci left: 8.893247e-01	ci right 8.899187e-01	k: 3807582	n:4280000
GBF1   4280000 perm   8924 sec   (480 perm/sec)   p_kst 8.896220e-01   p_cons 2.457944e-04   p_joint 2.678505e-03

Joint ci ratio: 3.652586e-02	ci left: 2.628710e-03	ci right 2.726741e-03	k: 11486	n:4290000
Cons ci ratio: 1.206720e-01	ci left: 2.310789e-04	ci right 2.609777e-04	k: 1054	n:4290000
KS ci ratio: 6.666200e-04	ci left: 8.893332e-01	ci right 8.899264e-01	k: 3816513	n:4290000
GBF1   4290000 perm   8962 sec   (479 perm/sec)   p_kst 8.896301e-01   p_cons 2.456876e-04   p_joint 2.677389e-03

Joint ci ratio: 3.669452e-02	ci left: 2.598401e-03	ci right 2.695759e-03	k: 11381	n:4300000
Cons ci ratio: 1.205578e-01	ci left: 2.309926e-04	ci right 2.608499e-04	k: 1056	n:4300000
KS ci ratio: 6.658699e-04	ci left: 8.893260e-01	ci right 8.899186e-01	k: 3825377	n:4300000
GBF1   4300000 perm   9001 sec   (478 perm/sec)   p_kst 8.896226e-01   p_cons 2.455814e-04   p_joint 2.646744e-03

Joint ci ratio: 3.664785e-02	ci left: 2.599039e-03	ci right 2.696294e-03	k: 11410	n:4310000
Cons ci ratio: 1.205008e-01	ci left: 2.306817e-04	ci right 2.604837e-04	k: 1057	n:4310000
KS ci ratio: 6.650987e-04	ci left: 8.893258e-01	ci right 8.899177e-01	k: 3834271	n:4310000
GBF1   4310000 perm   9041 sec   (477 perm/sec)   p_kst 8.896220e-01   p_cons 2.452436e-04   p_joint 2.647332e-03

Joint ci ratio: 3.672063e-02	ci left: 2.582702e-03	ci right 2.679541e-03	k: 11365	n:4320000
Cons ci ratio: 1.203871e-01	ci left: 2.305967e-04	ci right 2.603577e-04	k: 1059	n:4320000
KS ci ratio: 6.643670e-04	ci left: 8.893148e-01	ci right 8.899060e-01	k: 3843118	n:4320000
GBF1   4320000 perm   9080 sec   (476 perm/sec)   p_kst 8.896106e-01   p_cons 2.451389e-04   p_joint 2.630787e-03

Joint ci ratio: 3.667870e-02	ci left: 2.582686e-03	ci right 2.679412e-03	k: 11391	n:4330000
Cons ci ratio: 1.203303e-01	ci left: 2.302881e-04	ci right 2.599943e-04	k: 1060	n:4330000
KS ci ratio: 6.635651e-04	ci left: 8.893253e-01	ci right 8.899158e-01	k: 3852058	n:4330000
GBF1   4330000 perm   9120 sec   (475 perm/sec)   p_kst 8.896208e-01   p_cons 2.448037e-04   p_joint 2.630716e-03

Joint ci ratio: 3.665785e-02	ci left: 2.579703e-03	ci right 2.676262e-03	k: 11404	n:4340000
Cons ci ratio: 1.202171e-01	ci left: 2.302045e-04	ci right 2.598699e-04	k: 1062	n:4340000
KS ci ratio: 6.628097e-04	ci left: 8.893228e-01	ci right 8.899126e-01	k: 3860942	n:4340000
GBF1   4340000 perm   9159 sec   (474 perm/sec)   p_kst 8.896180e-01   p_cons 2.447005e-04   p_joint 2.627650e-03

Joint ci ratio: 3.662738e-02	ci left: 2.578101e-03	ci right 2.674517e-03	k: 11423	n:4350000
Cons ci ratio: 1.201042e-01	ci left: 2.301212e-04	ci right 2.597461e-04	k: 1064	n:4350000
KS ci ratio: 6.620259e-04	ci left: 8.893295e-01	ci right 8.899187e-01	k: 3869866	n:4350000
GBF1   4350000 perm   9199 sec   (473 perm/sec)   p_kst 8.896244e-01   p_cons 2.445977e-04   p_joint 2.625977e-03

Joint ci ratio: 3.657617e-02	ci left: 2.579460e-03	ci right 2.675790e-03	k: 11455	n:4360000
Cons ci ratio: 1.197672e-01	ci left: 2.309283e-04	ci right 2.605677e-04	k: 1070	n:4360000
KS ci ratio: 6.612371e-04	ci left: 8.893385e-01	ci right 8.899270e-01	k: 3878800	n:4360000
GBF1   4360000 perm   9238 sec   (472 perm/sec)   p_kst 8.896330e-01   p_cons 2.454128e-04   p_joint 2.627294e-03

Joint ci ratio: 3.653952e-02	ci left: 2.578772e-03	ci right 2.674978e-03	k: 11478	n:4370000
Cons ci ratio: 1.195998e-01	ci left: 2.310658e-04	ci right 2.606785e-04	k: 1073	n:4370000
KS ci ratio: 6.604726e-04	ci left: 8.893411e-01	ci right 8.899289e-01	k: 3887706	n:4370000
GBF1   4370000 perm   9277 sec   (471 perm/sec)   p_kst 8.896352e-01   p_cons 2.455378e-04   p_joint 2.626545e-03

Joint ci ratio: 3.663093e-02	ci left: 2.559990e-03	ci right 2.655738e-03	k: 11421	n:4380000
Cons ci ratio: 1.195442e-01	ci left: 2.307597e-04	ci right 2.603185e-04	k: 1074	n:4380000
KS ci ratio: 6.597300e-04	ci left: 8.893379e-01	ci right 8.899250e-01	k: 3896587	n:4380000
GBF1   4380000 perm   9318 sec   (470 perm/sec)   p_kst 8.896317e-01   p_cons 2.452055e-04   p_joint 2.607534e-03

Joint ci ratio: 3.659572e-02	ci left: 2.559124e-03	ci right 2.654746e-03	k: 11443	n:4390000
Cons ci ratio: 1.194331e-01	ci left: 2.306761e-04	ci right 2.601947e-04	k: 1076	n:4390000
KS ci ratio: 6.589601e-04	ci left: 8.893436e-01	ci right 8.899301e-01	k: 3905507	n:4390000
GBF1   4390000 perm   9358 sec   (469 perm/sec)   p_kst 8.896371e-01   p_cons 2.451025e-04   p_joint 2.606606e-03

Joint ci ratio: 3.655901e-02	ci left: 2.558487e-03	ci right 2.653988e-03	k: 11466	n:4400000
Cons ci ratio: 1.193224e-01	ci left: 2.305928e-04	ci right 2.600715e-04	k: 1078	n:4400000
KS ci ratio: 6.581890e-04	ci left: 8.893505e-01	ci right 8.899363e-01	k: 3914432	n:4400000
GBF1   4400000 perm   9398 sec   (468 perm/sec)   p_kst 8.896436e-01   p_cons 2.450000e-04   p_joint 2.605909e-03

Joint ci ratio: 3.653039e-02	ci left: 2.556730e-03	ci right 2.652088e-03	k: 11484	n:4410000
Cons ci ratio: 1.191569e-01	ci left: 2.307299e-04	ci right 2.601823e-04	k: 1081	n:4410000
KS ci ratio: 6.574487e-04	ci left: 8.893489e-01	ci right 8.899340e-01	k: 3923320	n:4410000
GBF1   4410000 perm   9438 sec   (467 perm/sec)   p_kst 8.896417e-01   p_cons 2.451247e-04   p_joint 2.604082e-03

Joint ci ratio: 3.649388e-02	ci left: 2.556101e-03	ci right 2.651339e-03	k: 11507	n:4420000
Cons ci ratio: 1.189372e-01	ci left: 2.310859e-04	ci right 2.605255e-04	k: 1085	n:4420000
KS ci ratio: 6.566860e-04	ci left: 8.893548e-01	ci right 8.899392e-01	k: 3932241	n:4420000
GBF1   4420000 perm   9478 sec   (466 perm/sec)   p_kst 8.896473e-01   p_cons 2.454751e-04   p_joint 2.603394e-03

Joint ci ratio: 3.645906e-02	ci left: 2.555252e-03	ci right 2.650366e-03	k: 11529	n:4430000
Cons ci ratio: 1.187188e-01	ci left: 2.314403e-04	ci right 2.608672e-04	k: 1089	n:4430000
KS ci ratio: 6.559576e-04	ci left: 8.893512e-01	ci right 8.899350e-01	k: 3941120	n:4430000
GBF1   4430000 perm   9519 sec   (465 perm/sec)   p_kst 8.896433e-01   p_cons 2.458239e-04   p_joint 2.602483e-03

Joint ci ratio: 3.644016e-02	ci left: 2.552175e-03	ci right 2.647124e-03	k: 11541	n:4440000
Cons ci ratio: 1.187188e-01	ci left: 2.309191e-04	ci right 2.602797e-04	k: 1089	n:4440000
KS ci ratio: 6.551993e-04	ci left: 8.893573e-01	ci right 8.899404e-01	k: 3950042	n:4440000
GBF1   4440000 perm   9559 sec   (464 perm/sec)   p_kst 8.896491e-01   p_cons 2.452703e-04   p_joint 2.599324e-03

Joint ci ratio: 3.640234e-02	ci left: 2.551784e-03	ci right 2.646618e-03	k: 11565	n:4450000
Cons ci ratio: 1.186644e-01	ci left: 2.306182e-04	ci right 2.599262e-04	k: 1090	n:4450000
KS ci ratio: 6.544825e-04	ci left: 8.893517e-01	ci right 8.899341e-01	k: 3958912	n:4450000
GBF1   4450000 perm   9599 sec   (464 perm/sec)   p_kst 8.896431e-01   p_cons 2.449438e-04   p_joint 2.598876e-03

Joint ci ratio: 3.636307e-02	ci left: 2.551617e-03	ci right 2.646340e-03	k: 11590	n:4460000
Cons ci ratio: 1.186101e-01	ci left: 2.303187e-04	ci right 2.595742e-04	k: 1091	n:4460000
KS ci ratio: 6.537756e-04	ci left: 8.893438e-01	ci right 8.899256e-01	k: 3967772	n:4460000
GBF1   4460000 perm   9640 sec   (463 perm/sec)   p_kst 8.896350e-01   p_cons 2.446188e-04   p_joint 2.598655e-03

Joint ci ratio: 3.632549e-02	ci left: 2.551229e-03	ci right 2.645838e-03	k: 11614	n:4470000
Cons ci ratio: 1.185016e-01	ci left: 2.302376e-04	ci right 2.594542e-04	k: 1093	n:4470000
KS ci ratio: 6.530441e-04	ci left: 8.893441e-01	ci right 8.899252e-01	k: 3976668	n:4470000
GBF1   4470000 perm   9680 sec   (462 perm/sec)   p_kst 8.896349e-01   p_cons 2.445190e-04   p_joint 2.598210e-03

Joint ci ratio: 3.628333e-02	ci left: 2.551506e-03	ci right 2.646013e-03	k: 11641	n:4480000
Cons ci ratio: 1.183394e-01	ci left: 2.303735e-04	ci right 2.595645e-04	k: 1096	n:4480000
KS ci ratio: 6.523329e-04	ci left: 8.893389e-01	ci right 8.899195e-01	k: 3985540	n:4480000
GBF1   4480000 perm   9720 sec   (461 perm/sec)   p_kst 8.896295e-01   p_cons 2.446429e-04   p_joint 2.598438e-03

Joint ci ratio: 3.623822e-02	ci left: 2.552224e-03	ci right 2.646637e-03	k: 11670	n:4490000
Cons ci ratio: 1.181780e-01	ci left: 2.305088e-04	ci right 2.596744e-04	k: 1099	n:4490000
KS ci ratio: 6.515812e-04	ci left: 8.893468e-01	ci right 8.899267e-01	k: 3994470	n:4490000
GBF1   4490000 perm   9761 sec   (460 perm/sec)   p_kst 8.896370e-01   p_cons 2.447661e-04   p_joint 2.599109e-03

Joint ci ratio: 3.620878e-02	ci left: 2.550736e-03	ci right 2.645017e-03	k: 11689	n:4500000
Cons ci ratio: 1.180707e-01	ci left: 2.304279e-04	ci right 2.595549e-04	k: 1101	n:4500000
KS ci ratio: 6.508630e-04	ci left: 8.893452e-01	ci right 8.899245e-01	k: 4003358	n:4500000
GBF1   4500000 perm   9803 sec   (459 perm/sec)   p_kst 8.896351e-01   p_cons 2.446667e-04   p_joint 2.597556e-03

Joint ci ratio: 3.617787e-02	ci left: 2.549475e-03	ci right 2.643627e-03	k: 11709	n:4510000
Cons ci ratio: 1.179103e-01	ci left: 2.305625e-04	ci right 2.596642e-04	k: 1104	n:4510000
KS ci ratio: 6.501449e-04	ci left: 8.893444e-01	ci right 8.899230e-01	k: 4012249	n:4510000
GBF1   4510000 perm   9844 sec   (458 perm/sec)   p_kst 8.896339e-01   p_cons 2.447894e-04   p_joint 2.596231e-03

Joint ci ratio: 3.615168e-02	ci left: 2.547562e-03	ci right 2.641573e-03	k: 11726	n:4520000
Cons ci ratio: 1.178570e-01	ci left: 2.302671e-04	ci right 2.593175e-04	k: 1105	n:4520000
KS ci ratio: 6.494622e-04	ci left: 8.893335e-01	ci right 8.899115e-01	k: 4021095	n:4520000
GBF1   4520000 perm   9885 sec   (457 perm/sec)   p_kst 8.896228e-01   p_cons 2.444690e-04   p_joint 2.594248e-03

Joint ci ratio: 3.610551e-02	ci left: 2.548501e-03	ci right 2.642424e-03	k: 11756	n:4530000
Cons ci ratio: 1.177506e-01	ci left: 2.301873e-04	ci right 2.591995e-04	k: 1107	n:4530000
KS ci ratio: 6.487247e-04	ci left: 8.893400e-01	ci right 8.899173e-01	k: 4030019	n:4530000
GBF1   4530000 perm   9926 sec   (456 perm/sec)   p_kst 8.896289e-01   p_cons 2.443709e-04   p_joint 2.595143e-03

Joint ci ratio: 3.605798e-02	ci left: 2.549654e-03	ci right 2.643493e-03	k: 11787	n:4540000
Cons ci ratio: 1.176444e-01	ci left: 2.301078e-04	ci right 2.590821e-04	k: 1109	n:4540000
KS ci ratio: 6.480209e-04	ci left: 8.893369e-01	ci right 8.899137e-01	k: 4038900	n:4540000
GBF1   4540000 perm   9967 sec   (455 perm/sec)   p_kst 8.896256e-01   p_cons 2.442731e-04   p_joint 2.596256e-03

Joint ci ratio: 3.601064e-02	ci left: 2.550802e-03	ci right 2.644558e-03	k: 11818	n:4550000
Cons ci ratio: 1.174330e-01	ci left: 2.304554e-04	ci right 2.594176e-04	k: 1113	n:4550000
KS ci ratio: 6.472804e-04	ci left: 8.893458e-01	ci right 8.899218e-01	k: 4047835	n:4550000
GBF1   4550000 perm   10009 sec   (455 perm/sec)   p_kst 8.896341e-01   p_cons 2.446154e-04   p_joint 2.597363e-03

Joint ci ratio: 3.597262e-02	ci left: 2.550641e-03	ci right 2.644290e-03	k: 11843	n:4560000
Cons ci ratio: 1.172752e-01	ci left: 2.305886e-04	ci right 2.595259e-04	k: 1116	n:4560000
KS ci ratio: 6.465105e-04	ci left: 8.893643e-01	ci right 8.899396e-01	k: 4056814	n:4560000
GBF1   4560000 perm   10051 sec   (454 perm/sec)   p_kst 8.896522e-01   p_cons 2.447368e-04   p_joint 2.597149e-03

Joint ci ratio: 3.593472e-02	ci left: 2.550481e-03	ci right 2.644024e-03	k: 11868	n:4570000
Cons ci ratio: 1.170136e-01	ci left: 2.311460e-04	ci right 2.600842e-04	k: 1121	n:4570000
KS ci ratio: 6.458435e-04	ci left: 8.893522e-01	ci right 8.899270e-01	k: 4065654	n:4570000
GBF1   4570000 perm   10092 sec   (453 perm/sec)   p_kst 8.896398e-01   p_cons 2.452954e-04   p_joint 2.596937e-03

Joint ci ratio: 3.589996e-02	ci left: 2.549889e-03	ci right 2.643318e-03	k: 11891	n:4580000
Cons ci ratio: 1.168575e-01	ci left: 2.312772e-04	ci right 2.601905e-04	k: 1124	n:4580000
KS ci ratio: 6.451548e-04	ci left: 8.893474e-01	ci right 8.899215e-01	k: 4074527	n:4580000
GBF1   4580000 perm   10134 sec   (452 perm/sec)   p_kst 8.896347e-01   p_cons 2.454148e-04   p_joint 2.596288e-03

Joint ci ratio: 3.585475e-02	ci left: 2.550811e-03	ci right 2.644153e-03	k: 11921	n:4590000
Cons ci ratio: 1.166502e-01	ci left: 2.316194e-04	ci right 2.605205e-04	k: 1128	n:4590000
KS ci ratio: 6.444290e-04	ci left: 8.893546e-01	ci right 8.899281e-01	k: 4083455	n:4590000
GBF1   4590000 perm   10176 sec   (451 perm/sec)   p_kst 8.896416e-01   p_cons 2.457516e-04   p_joint 2.597168e-03

Joint ci ratio: 3.581271e-02	ci left: 2.551299e-03	ci right 2.644547e-03	k: 11949	n:4600000
Cons ci ratio: 1.164441e-01	ci left: 2.319600e-04	ci right 2.608491e-04	k: 1132	n:4600000
KS ci ratio: 6.437192e-04	ci left: 8.893577e-01	ci right 8.899305e-01	k: 4092364	n:4600000
GBF1   4600000 perm   10218 sec   (450 perm/sec)   p_kst 8.896443e-01   p_cons 2.460870e-04   p_joint 2.597609e-03

Joint ci ratio: 3.575437e-02	ci left: 2.554148e-03	ci right 2.647346e-03	k: 11988	n:4610000
Cons ci ratio: 1.163415e-01	ci left: 2.318781e-04	ci right 2.607297e-04	k: 1134	n:4610000
KS ci ratio: 6.429762e-04	ci left: 8.893716e-01	ci right 8.899438e-01	k: 4101323	n:4610000
GBF1   4610000 perm   10259 sec   (449 perm/sec)   p_kst 8.896579e-01   p_cons 2.459870e-04   p_joint 2.600434e-03

Joint ci ratio: 3.571715e-02	ci left: 2.553983e-03	ci right 2.647075e-03	k: 12013	n:4620000
Cons ci ratio: 1.163415e-01	ci left: 2.313762e-04	ci right 2.601653e-04	k: 1134	n:4620000
KS ci ratio: 6.422938e-04	ci left: 8.893676e-01	ci right 8.899392e-01	k: 4110200	n:4620000
GBF1   4620000 perm   10301 sec   (449 perm/sec)   p_kst 8.896537e-01   p_cons 2.454545e-04   p_joint 2.600216e-03

Joint ci ratio: 3.567856e-02	ci left: 2.554032e-03	ci right 2.647024e-03	k: 12039	n:4630000
Cons ci ratio: 1.162903e-01	ci left: 2.310862e-04	ci right 2.598257e-04	k: 1135	n:4630000
KS ci ratio: 6.416179e-04	ci left: 8.893624e-01	ci right 8.899334e-01	k: 4119071	n:4630000
GBF1   4630000 perm   10343 sec   (448 perm/sec)   p_kst 8.896482e-01   p_cons 2.451404e-04   p_joint 2.600216e-03

Joint ci ratio: 3.563122e-02	ci left: 2.555363e-03	ci right 2.648277e-03	k: 12071	n:4640000
Cons ci ratio: 1.161881e-01	ci left: 2.310066e-04	ci right 2.597093e-04	k: 1137	n:4640000
KS ci ratio: 6.409489e-04	ci left: 8.893557e-01	ci right 8.899261e-01	k: 4127935	n:4640000
GBF1   4640000 perm   10386 sec   (447 perm/sec)   p_kst 8.896412e-01   p_cons 2.450431e-04   p_joint 2.601509e-03

Joint ci ratio: 3.559291e-02	ci left: 2.555409e-03	ci right 2.648223e-03	k: 12097	n:4650000
Cons ci ratio: 1.160352e-01	ci left: 2.311363e-04	ci right 2.598147e-04	k: 1140	n:4650000
KS ci ratio: 6.402961e-04	ci left: 8.893447e-01	ci right 8.899146e-01	k: 4136779	n:4650000
GBF1   4650000 perm   10428 sec   (446 perm/sec)   p_kst 8.896299e-01   p_cons 2.451613e-04   p_joint 2.601505e-03

Joint ci ratio: 3.555473e-02	ci left: 2.555455e-03	ci right 2.648169e-03	k: 12123	n:4660000
Cons ci ratio: 1.159844e-01	ci left: 2.308486e-04	ci right 2.594779e-04	k: 1141	n:4660000
KS ci ratio: 6.396124e-04	ci left: 8.893439e-01	ci right 8.899131e-01	k: 4145670	n:4660000
GBF1   4660000 perm   10470 sec   (445 perm/sec)   p_kst 8.896288e-01   p_cons 2.448498e-04   p_joint 2.601502e-03

Joint ci ratio: 3.551813e-02	ci left: 2.555289e-03	ci right 2.647899e-03	k: 12148	n:4670000
Cons ci ratio: 1.156809e-01	ci left: 2.316019e-04	ci right 2.602443e-04	k: 1147	n:4670000
KS ci ratio: 6.388996e-04	ci left: 8.893527e-01	ci right 8.899213e-01	k: 4154606	n:4670000
GBF1   4670000 perm   10511 sec   (444 perm/sec)   p_kst 8.896373e-01   p_cons 2.456103e-04   p_joint 2.601285e-03

Joint ci ratio: 3.547434e-02	ci left: 2.556182e-03	ci right 2.648708e-03	k: 12178	n:4680000
Cons ci ratio: 1.155300e-01	ci left: 2.317295e-04	ci right 2.603478e-04	k: 1150	n:4680000
KS ci ratio: 6.381919e-04	ci left: 8.893606e-01	ci right 8.899286e-01	k: 4163538	n:4680000
GBF1   4680000 perm   10554 sec   (443 perm/sec)   p_kst 8.896449e-01   p_cons 2.457265e-04   p_joint 2.602137e-03

Joint ci ratio: 3.542781e-02	ci left: 2.557495e-03	ci right 2.649944e-03	k: 12210	n:4690000
Cons ci ratio: 1.154799e-01	ci left: 2.314425e-04	ci right 2.600120e-04	k: 1151	n:4690000
KS ci ratio: 6.375295e-04	ci left: 8.893553e-01	ci right 8.899227e-01	k: 4172408	n:4690000
GBF1   4690000 perm   10596 sec   (443 perm/sec)   p_kst 8.896392e-01   p_cons 2.454158e-04   p_joint 2.603412e-03

Joint ci ratio: 3.583024e-02	ci left: 2.494695e-03	ci right 2.585920e-03	k: 11938	n:4700000
Cons ci ratio: 1.152799e-01	ci left: 2.317765e-04	ci right 2.603344e-04	k: 1155	n:4700000
KS ci ratio: 6.368518e-04	ci left: 8.893553e-01	ci right 8.899221e-01	k: 4181303	n:4700000
GBF1   4700000 perm   10639 sec   (442 perm/sec)   p_kst 8.896389e-01   p_cons 2.457447e-04   p_joint 2.540000e-03

Joint ci ratio: 3.536129e-02	ci left: 2.556315e-03	ci right 2.648545e-03	k: 12256	n:4710000
Cons ci ratio: 1.151803e-01	ci left: 2.316968e-04	ci right 2.602186e-04	k: 1157	n:4710000
KS ci ratio: 6.361757e-04	ci left: 8.893555e-01	ci right 8.899217e-01	k: 4190199	n:4710000
GBF1   4710000 perm   10681 sec   (441 perm/sec)   p_kst 8.896389e-01   p_cons 2.456476e-04   p_joint 2.602123e-03

Joint ci ratio: 3.531952e-02	ci left: 2.556989e-03	ci right 2.649132e-03	k: 12285	n:4720000
Cons ci ratio: 1.150314e-01	ci left: 2.318232e-04	ci right 2.603212e-04	k: 1160	n:4720000
KS ci ratio: 6.355161e-04	ci left: 8.893513e-01	ci right 8.899169e-01	k: 4199074	n:4720000
GBF1   4720000 perm   10724 sec   (440 perm/sec)   p_kst 8.896343e-01   p_cons 2.457627e-04   p_joint 2.602754e-03

Joint ci ratio: 3.527216e-02	ci left: 2.558498e-03	ci right 2.650569e-03	k: 12318	n:4730000
Cons ci ratio: 1.148338e-01	ci left: 2.321545e-04	ci right 2.606408e-04	k: 1164	n:4730000
KS ci ratio: 6.348230e-04	ci left: 8.893581e-01	ci right 8.899230e-01	k: 4208001	n:4730000
GBF1   4730000 perm   10767 sec   (439 perm/sec)   p_kst 8.896408e-01   p_cons 2.460888e-04   p_joint 2.604228e-03

Joint ci ratio: 3.523070e-02	ci left: 2.559164e-03	ci right 2.651149e-03	k: 12347	n:4740000
Cons ci ratio: 1.146862e-01	ci left: 2.322795e-04	ci right 2.607419e-04	k: 1167	n:4740000
KS ci ratio: 6.341492e-04	ci left: 8.893596e-01	ci right 8.899239e-01	k: 4216903	n:4740000
GBF1   4740000 perm   10810 sec   (438 perm/sec)   p_kst 8.896420e-01   p_cons 2.462025e-04   p_joint 2.604852e-03

Joint ci ratio: 3.520794e-02	ci left: 2.557115e-03	ci right 2.648966e-03	k: 12363	n:4750000
Cons ci ratio: 1.146862e-01	ci left: 2.317904e-04	ci right 2.601930e-04	k: 1167	n:4750000
KS ci ratio: 6.334476e-04	ci left: 8.893703e-01	ci right 8.899341e-01	k: 4225849	n:4750000
GBF1   4750000 perm   10854 sec   (438 perm/sec)   p_kst 8.896524e-01   p_cons 2.456842e-04   p_joint 2.602737e-03

Joint ci ratio: 3.517098e-02	ci left: 2.557158e-03	ci right 2.648911e-03	k: 12389	n:4760000
Cons ci ratio: 1.146862e-01	ci left: 2.313035e-04	ci right 2.596464e-04	k: 1167	n:4760000
KS ci ratio: 6.327978e-04	ci left: 8.893657e-01	ci right 8.899288e-01	k: 4234722	n:4760000
GBF1   4760000 perm   10898 sec   (437 perm/sec)   p_kst 8.896475e-01   p_cons 2.451681e-04   p_joint 2.602731e-03

Joint ci ratio: 3.512704e-02	ci left: 2.558238e-03	ci right 2.649914e-03	k: 12420	n:4770000
Cons ci ratio: 1.145392e-01	ci left: 2.314295e-04	ci right 2.597490e-04	k: 1170	n:4770000
KS ci ratio: 6.321264e-04	ci left: 8.893684e-01	ci right 8.899309e-01	k: 4243630	n:4770000
GBF1   4770000 perm   10942 sec   (436 perm/sec)   p_kst 8.896499e-01   p_cons 2.452830e-04   p_joint 2.603774e-03

Joint ci ratio: 3.508468e-02	ci left: 2.559108e-03	ci right 2.650702e-03	k: 12450	n:4780000
Cons ci ratio: 1.143928e-01	ci left: 2.315550e-04	ci right 2.598512e-04	k: 1173	n:4780000
KS ci ratio: 6.314786e-04	ci left: 8.893644e-01	ci right 8.899264e-01	k: 4252506	n:4780000
GBF1   4780000 perm   10985 sec   (435 perm/sec)   p_kst 8.896456e-01   p_cons 2.453975e-04   p_joint 2.604603e-03

Joint ci ratio: 3.506502e-02	ci left: 2.556662e-03	ci right 2.648116e-03	k: 12464	n:4790000
Cons ci ratio: 1.143928e-01	ci left: 2.310715e-04	ci right 2.593087e-04	k: 1173	n:4790000
KS ci ratio: 6.308093e-04	ci left: 8.893677e-01	ci right 8.899291e-01	k: 4261417	n:4790000
GBF1   4790000 perm   11028 sec   (434 perm/sec)   p_kst 8.896486e-01   p_cons 2.448852e-04   p_joint 2.602088e-03

Joint ci ratio: 3.503976e-02	ci left: 2.555053e-03	ci right 2.646382e-03	k: 12482	n:4800000
Cons ci ratio: 1.141984e-01	ci left: 2.313997e-04	ci right 2.596256e-04	k: 1177	n:4800000
KS ci ratio: 6.301368e-04	ci left: 8.893727e-01	ci right 8.899335e-01	k: 4270336	n:4800000
GBF1   4800000 perm   11072 sec   (434 perm/sec)   p_kst 8.896533e-01   p_cons 2.452083e-04   p_joint 2.600417e-03

Joint ci ratio: 3.500192e-02	ci left: 2.555305e-03	ci right 2.646543e-03	k: 12509	n:4810000
Cons ci ratio: 1.140533e-01	ci left: 2.315245e-04	ci right 2.597274e-04	k: 1180	n:4810000
KS ci ratio: 6.294932e-04	ci left: 8.893693e-01	ci right 8.899296e-01	k: 4279215	n:4810000
GBF1   4810000 perm   11116 sec   (433 perm/sec)   p_kst 8.896497e-01   p_cons 2.453222e-04   p_joint 2.600624e-03

Joint ci ratio: 3.496700e-02	ci left: 2.555145e-03	ci right 2.646284e-03	k: 12534	n:4820000
Cons ci ratio: 1.139568e-01	ci left: 2.314472e-04	ci right 2.596153e-04	k: 1182	n:4820000
KS ci ratio: 6.288913e-04	ci left: 8.893535e-01	ci right 8.899132e-01	k: 4288034	n:4820000
GBF1   4820000 perm   11160 sec   (432 perm/sec)   p_kst 8.896336e-01   p_cons 2.452282e-04   p_joint 2.600415e-03

Joint ci ratio: 3.493219e-02	ci left: 2.554985e-03	ci right 2.646027e-03	k: 12559	n:4830000
Cons ci ratio: 1.139087e-01	ci left: 2.311692e-04	ci right 2.592907e-04	k: 1183	n:4830000
KS ci ratio: 6.282316e-04	ci left: 8.893565e-01	ci right 8.899155e-01	k: 4296943	n:4830000
GBF1   4830000 perm   11204 sec   (431 perm/sec)   p_kst 8.896362e-01   p_cons 2.449275e-04   p_joint 2.600207e-03

Joint ci ratio: 3.489748e-02	ci left: 2.554827e-03	ci right 2.645770e-03	k: 12584	n:4840000
Cons ci ratio: 1.137168e-01	ci left: 2.314945e-04	ci right 2.596049e-04	k: 1187	n:4840000
KS ci ratio: 6.275831e-04	ci left: 8.893565e-01	ci right 8.899150e-01	k: 4305838	n:4840000
GBF1   4840000 perm   11248 sec   (430 perm/sec)   p_kst 8.896360e-01   p_cons 2.452479e-04   p_joint 2.600000e-03

Joint ci ratio: 3.486703e-02	ci left: 2.554056e-03	ci right 2.644890e-03	k: 12606	n:4850000
Cons ci ratio: 1.135734e-01	ci left: 2.316182e-04	ci right 2.597058e-04	k: 1190	n:4850000
KS ci ratio: 6.269584e-04	ci left: 8.893497e-01	ci right 8.899076e-01	k: 4314700	n:4850000
GBF1   4850000 perm   11294 sec   (429 perm/sec)   p_kst 8.896289e-01   p_cons 2.453608e-04   p_joint 2.599175e-03

Joint ci ratio: 3.483943e-02	ci left: 2.552880e-03	ci right 2.643599e-03	k: 12626	n:4860000
Cons ci ratio: 1.135735e-01	ci left: 2.311416e-04	ci right 2.591714e-04	k: 1190	n:4860000
KS ci ratio: 6.263093e-04	ci left: 8.893511e-01	ci right 8.899085e-01	k: 4323602	n:4860000
GBF1   4860000 perm   11339 sec   (429 perm/sec)   p_kst 8.896300e-01   p_cons 2.448560e-04   p_joint 2.597942e-03

Joint ci ratio: 3.480086e-02	ci left: 2.553337e-03	ci right 2.643971e-03	k: 12654	n:4870000
Cons ci ratio: 1.134782e-01	ci left: 2.310660e-04	ci right 2.590616e-04	k: 1192	n:4870000
KS ci ratio: 6.256864e-04	ci left: 8.893450e-01	ci right 8.899018e-01	k: 4332467	n:4870000
GBF1   4870000 perm   11384 sec   (428 perm/sec)   p_kst 8.896236e-01   p_cons 2.447639e-04   p_joint 2.598357e-03

Joint ci ratio: 3.476516e-02	ci left: 2.553386e-03	ci right 2.643927e-03	k: 12680	n:4880000
Cons ci ratio: 1.134307e-01	ci left: 2.307916e-04	ci right 2.587415e-04	k: 1193	n:4880000
KS ci ratio: 6.250439e-04	ci left: 8.893456e-01	ci right 8.899019e-01	k: 4341365	n:4880000
GBF1   4880000 perm   11428 sec   (427 perm/sec)   p_kst 8.896240e-01   p_cons 2.444672e-04   p_joint 2.598361e-03

Joint ci ratio: 3.474054e-02	ci left: 2.551814e-03	ci right 2.642233e-03	k: 12698	n:4890000
Cons ci ratio: 1.133359e-01	ci left: 2.307170e-04	ci right 2.586329e-04	k: 1195	n:4890000
KS ci ratio: 6.244085e-04	ci left: 8.893446e-01	ci right 8.899003e-01	k: 4350255	n:4890000
GBF1   4890000 perm   11472 sec   (426 perm/sec)   p_kst 8.896227e-01   p_cons 2.443763e-04   p_joint 2.596728e-03

Joint ci ratio: 3.469957e-02	ci left: 2.552675e-03	ci right 2.643016e-03	k: 12728	n:4900000
Cons ci ratio: 1.132885e-01	ci left: 2.304444e-04	ci right 2.583150e-04	k: 1196	n:4900000
KS ci ratio: 6.237433e-04	ci left: 8.893537e-01	ci right 8.899087e-01	k: 4359194	n:4900000
GBF1   4900000 perm   11517 sec   (425 perm/sec)   p_kst 8.896314e-01   p_cons 2.440816e-04   p_joint 2.597551e-03

Joint ci ratio: 3.466418e-02	ci left: 2.552726e-03	ci right 2.642975e-03	k: 12754	n:4910000
Cons ci ratio: 1.132412e-01	ci left: 2.301730e-04	ci right 2.579983e-04	k: 1197	n:4910000
KS ci ratio: 6.230744e-04	ci left: 8.893645e-01	ci right 8.899190e-01	k: 4368142	n:4910000
GBF1   4910000 perm   11562 sec   (425 perm/sec)   p_kst 8.896420e-01   p_cons 2.437882e-04   p_joint 2.597556e-03

Joint ci ratio: 3.461805e-02	ci left: 2.554388e-03	ci right 2.644573e-03	k: 12788	n:4920000
Cons ci ratio: 1.130526e-01	ci left: 2.304952e-04	ci right 2.583099e-04	k: 1201	n:4920000
KS ci ratio: 6.224611e-04	ci left: 8.893584e-01	ci right 8.899123e-01	k: 4377007	n:4920000
GBF1   4920000 perm   11606 sec   (424 perm/sec)   p_kst 8.896356e-01   p_cons 2.441057e-04   p_joint 2.599187e-03

Joint ci ratio: 3.458291e-02	ci left: 2.554435e-03	ci right 2.644528e-03	k: 12814	n:4930000
Cons ci ratio: 1.129118e-01	ci left: 2.306190e-04	ci right 2.584117e-04	k: 1204	n:4930000
KS ci ratio: 6.218651e-04	ci left: 8.893474e-01	ci right 8.899008e-01	k: 4385848	n:4930000
GBF1   4930000 perm   11652 sec   (423 perm/sec)   p_kst 8.896243e-01   p_cons 2.442191e-04   p_joint 2.599189e-03

Joint ci ratio: 3.455328e-02	ci left: 2.553679e-03	ci right 2.643667e-03	k: 12836	n:4940000
Cons ci ratio: 1.128650e-01	ci left: 2.303488e-04	ci right 2.580967e-04	k: 1205	n:4940000
KS ci ratio: 6.212291e-04	ci left: 8.893497e-01	ci right 8.899025e-01	k: 4394754	n:4940000
GBF1   4940000 perm   11697 sec   (422 perm/sec)   p_kst 8.896263e-01   p_cons 2.439271e-04   p_joint 2.598381e-03

Joint ci ratio: 3.451699e-02	ci left: 2.553927e-03	ci right 2.643828e-03	k: 12863	n:4950000
Cons ci ratio: 1.127716e-01	ci left: 2.302761e-04	ci right 2.579907e-04	k: 1207	n:4950000
KS ci ratio: 6.205899e-04	ci left: 8.893535e-01	ci right 8.899058e-01	k: 4403668	n:4950000
GBF1   4950000 perm   11742 sec   (422 perm/sec)   p_kst 8.896299e-01   p_cons 2.438384e-04   p_joint 2.598586e-03

Joint ci ratio: 3.448350e-02	ci left: 2.553775e-03	ci right 2.643581e-03	k: 12888	n:4960000
Cons ci ratio: 1.126783e-01	ci left: 2.302037e-04	ci right 2.578852e-04	k: 1209	n:4960000
KS ci ratio: 6.199597e-04	ci left: 8.893552e-01	ci right 8.899069e-01	k: 4412571	n:4960000
GBF1   4960000 perm   11787 sec   (421 perm/sec)   p_kst 8.896312e-01   p_cons 2.437500e-04   p_joint 2.598387e-03

Joint ci ratio: 3.444878e-02	ci left: 2.553823e-03	ci right 2.643539e-03	k: 12914	n:4970000
Cons ci ratio: 1.125853e-01	ci left: 2.301316e-04	ci right 2.577801e-04	k: 1211	n:4970000
KS ci ratio: 6.193156e-04	ci left: 8.893618e-01	ci right 8.899130e-01	k: 4421499	n:4970000
GBF1   4970000 perm   11832 sec   (420 perm/sec)   p_kst 8.896376e-01   p_cons 2.436620e-04   p_joint 2.598390e-03

Joint ci ratio: 3.441282e-02	ci left: 2.554070e-03	ci right 2.643699e-03	k: 12941	n:4980000
Cons ci ratio: 1.125853e-01	ci left: 2.296695e-04	ci right 2.572624e-04	k: 1211	n:4980000
KS ci ratio: 6.187678e-04	ci left: 8.893385e-01	ci right 8.898892e-01	k: 4430278	n:4980000
GBF1   4980000 perm   11876 sec   (419 perm/sec)   p_kst 8.896141e-01   p_cons 2.431727e-04   p_joint 2.598594e-03

Joint ci ratio: 3.438096e-02	ci left: 2.553720e-03	ci right 2.643252e-03	k: 12965	n:4990000
Cons ci ratio: 1.125389e-01	ci left: 2.294040e-04	ci right 2.569529e-04	k: 1212	n:4990000
KS ci ratio: 6.181671e-04	ci left: 8.893325e-01	ci right 8.898826e-01	k: 4439143	n:4990000
GBF1   4990000 perm   11922 sec   (419 perm/sec)   p_kst 8.896078e-01   p_cons 2.428858e-04   p_joint 2.598196e-03

Joint ci ratio: 3.429761e-02	ci left: 2.561104e-03	ci right 2.650673e-03	k: 13028	n:5000000
Cons ci ratio: 1.124926e-01	ci left: 2.291395e-04	ci right 2.566446e-04	k: 1213	n:5000000
KS ci ratio: 6.175556e-04	ci left: 8.893306e-01	ci right 8.898802e-01	k: 4448028	n:5000000
GBF1   5000000 perm   11967 sec   (418 perm/sec)   p_kst 8.896056e-01   p_cons 2.426000e-04   p_joint 2.605600e-03

Outputting figure to mutsig2_images.part000000000069/GBF1.6_5736_5000000_0.88961_0.0002426_0.0026056.png
                gene_name: GBF1
               theta_stop: 0.11 
                    nperm: 5000000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.00024 
      ci_cons_bounds_left: 0.00023 
     ci_cons_bounds_right: 0.00026 
                  p_joint: 0.0026 
     ci_joint_bounds_left: 0.0026 
    ci_joint_bounds_right: 0.0027 

Current progress: 20 percent done.
GBP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.317620e-02	ci left: 5.728619e-01	ci right 5.922899e-01	k: 5826	n:10000
Cons ci ratio: 4.646584e-02	ci left: 4.060162e-01	ci right 4.254329e-01	k: 4157	n:10000
KS ci ratio: 4.600038e-02	ci left: 4.108988e-01	ci right 4.303474e-01	k: 4206	n:10000
GBP4   10000 perm   2 sec   (5121 perm/sec)   p_kst 4.206000e-01   p_cons 4.157000e-01   p_joint 5.826000e-01

Outputting figure to mutsig2_images.part000000000069/GBP4.6_1967_10000_0.4206_0.4157_0.5826.png
                gene_name: GBP4
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 22 percent done.
GANAB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.709732e-02	ci left: 8.328694e-01	ci right 8.473319e-01	k: 8402	n:10000
KS ci ratio: 1.602799e-02	ci left: 8.497808e-01	ci right 8.636107e-01	k: 8568	n:10000
GANAB   10000 perm   2 sec   (4793 perm/sec)   p_kst 8.568000e-01   p_cons 8.402000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000069/GANAB.5_3001_10000_0.8568_0.8402_1.png
                gene_name: GANAB
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 24 percent done.
GANC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.611998e-02	ci left: 6.833505e-01	ci right 7.015373e-01	k: 6925	n:10000
KS ci ratio: 8.195533e-03	ci left: 9.540918e-01	ci right 9.620385e-01	k: 9582	n:10000
GANC   10000 perm   2 sec   (5148 perm/sec)   p_kst 9.582000e-01   p_cons 6.925000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000069/GANC.5_2841_10000_0.9582_0.6925_1.png
                gene_name: GANC
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 26 percent done.
GC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.364582e-02	ci left: 7.244142e-01	ci right 7.418498e-01	k: 7332	n:10000
Cons ci ratio: 3.125513e-02	ci left: 6.016648e-01	ci right 6.208704e-01	k: 6113	n:10000
KS ci ratio: 5.572947e-02	ci left: 3.216780e-01	ci right 3.402206e-01	k: 3309	n:10000
GC   10000 perm   2 sec   (5868 perm/sec)   p_kst 3.309000e-01   p_cons 6.113000e-01   p_joint 7.332000e-01

Outputting figure to mutsig2_images.part000000000069/GC.5_1473_10000_0.3309_0.6113_0.7332.png
                gene_name: GC
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 28 percent done.
GCK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.860936e-02	ci left: 8.083654e-01	ci right 8.236501e-01	k: 8161	n:10000
Cons ci ratio: 3.077713e-02	ci left: 6.089964e-01	ci right 6.281345e-01	k: 6186	n:10000
KS ci ratio: 4.072890e-02	ci left: 4.709642e-01	ci right 4.906470e-01	k: 4808	n:10000
GCK   10000 perm   2 sec   (6213 perm/sec)   p_kst 4.808000e-01   p_cons 6.186000e-01   p_joint 8.161000e-01

Outputting figure to mutsig2_images.part000000000069/GCK.5_1536_10000_0.4808_0.6186_0.8161.png
                gene_name: GCK
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 30 percent done.
GDF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.333331e-02	ci left: 5.705552e-01	ci right 5.899980e-01	k: 5803	n:10000
Cons ci ratio: 7.839608e-04	ci left: 9.991235e-01	ci right 9.999381e-01	k: 9997	n:10000
KS ci ratio: 5.713003e-02	ci left: 3.108607e-01	ci right 3.292442e-01	k: 3200	n:10000
GDF2   10000 perm   2 sec   (6256 perm/sec)   p_kst 3.200000e-01   p_cons 9.997000e-01   p_joint 5.803000e-01

Outputting figure to mutsig2_images.part000000000069/GDF2.5_1298_10000_0.32_0.9997_0.5803.png
                gene_name: GDF2
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 32 percent done.
GBA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.558138e-02	ci left: 8.567172e-01	ci right 8.702703e-01	k: 8636	n:10000
Cons ci ratio: 2.022342e-02	ci left: 7.816803e-01	ci right 7.977506e-01	k: 7898	n:10000
KS ci ratio: 2.240249e-02	ci left: 7.452334e-01	ci right 7.622186e-01	k: 7538	n:10000
GBA   10000 perm   2 sec   (5600 perm/sec)   p_kst 7.538000e-01   p_cons 7.898000e-01   p_joint 8.636000e-01

Outputting figure to mutsig2_images.part000000000069/GBA.4_1655_10000_0.7538_0.7898_0.8636.png
                gene_name: GBA
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 34 percent done.
GBP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.023461e-02	ci left: 4.770586e-01	ci right 4.967491e-01	k: 4869	n:10000
Cons ci ratio: 8.417885e-02	ci left: 1.706458e-01	ci right 1.857422e-01	k: 1781	n:10000
KS ci ratio: 2.366395e-02	ci left: 7.241112e-01	ci right 7.415529e-01	k: 7329	n:10000
GBP2   10000 perm   2 sec   (5719 perm/sec)   p_kst 7.329000e-01   p_cons 1.781000e-01   p_joint 4.869000e-01

Outputting figure to mutsig2_images.part000000000069/GBP2.4_1816_10000_0.7329_0.1781_0.4869.png
                gene_name: GBP2
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 36 percent done.
GBX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.133555e-02	ci left: 2.810196e-01	ci right 2.989030e-01	k: 2899	n:10000
Cons ci ratio: 1.627524e-02	ci left: 8.459069e-01	ci right 8.598868e-01	k: 8530	n:10000
KS ci ratio: 9.364237e-02	ci left: 1.420738e-01	ci right 1.561313e-01	k: 1490	n:10000
GBX1   10000 perm   2 sec   (5991 perm/sec)   p_kst 1.490000e-01   p_cons 8.530000e-01   p_joint 2.899000e-01

Outputting figure to mutsig2_images.part000000000069/GBX1.4_1099_10000_0.149_0.853_0.2899.png
                gene_name: GBX1
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 38 percent done.
GCKR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.953949e-02	ci left: 7.930377e-01	ci right 8.087866e-01	k: 8010	n:10000
KS ci ratio: 1.944755e-02	ci left: 7.945595e-01	ci right 8.102639e-01	k: 8025	n:10000
GCKR   10000 perm   2 sec   (5935 perm/sec)   p_kst 8.025000e-01   p_cons 8.010000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000069/GCKR.4_1954_10000_0.8025_0.801_1.png
                gene_name: GCKR
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 40 percent done.
GDAP1L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.930814e-02	ci left: 6.319101e-01	ci right 6.508075e-01	k: 6414	n:10000
Cons ci ratio: 8.988259e-02	ci left: 1.525700e-01	ci right 1.670288e-01	k: 1597	n:10000
KS ci ratio: 1.813674e-02	ci left: 8.160871e-01	ci right 8.311239e-01	k: 8237	n:10000
GDAP1L1   10000 perm   2 sec   (6071 perm/sec)   p_kst 8.237000e-01   p_cons 1.597000e-01   p_joint 6.414000e-01

Outputting figure to mutsig2_images.part000000000069/GDAP1L1.4_1128_10000_0.8237_0.1597_0.6414.png
                gene_name: GDAP1L1
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 42 percent done.
GDF10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.055796e-02	ci left: 1.506072e-01	ci right 1.649928e-01	k: 1577	n:10000
Cons ci ratio: 1.894323e-02	ci left: 8.028818e-01	ci right 8.183368e-01	k: 8107	n:10000
KS ci ratio: 1.915330e-01	ci left: 3.633915e-02	ci right 4.413159e-02	k: 401	n:10000
GDF10   10000 perm   2 sec   (6178 perm/sec)   p_kst 4.010000e-02   p_cons 8.107000e-01   p_joint 1.577000e-01

Joint ci ratio: 5.491358e-02	ci left: 1.974439e-01	ci right 2.086425e-01	k: 4060	n:20000
Cons ci ratio: 1.325036e-02	ci left: 8.085369e-01	ci right 8.193717e-01	k: 16280	n:20000
KS ci ratio: 1.321329e-01	ci left: 3.935861e-02	ci right 4.497548e-02	k: 842	n:20000
GDF10   20000 perm   4 sec   (5348 perm/sec)   p_kst 4.210000e-02   p_cons 8.140000e-01   p_joint 2.030000e-01

Joint ci ratio: 5.554785e-02	ci left: 1.383978e-01	ci right 1.463383e-01	k: 4270	n:30000
Cons ci ratio: 1.103022e-02	ci left: 8.035638e-01	ci right 8.125098e-01	k: 24242	n:30000
KS ci ratio: 1.079538e-01	ci left: 3.982288e-02	ci right 4.439966e-02	k: 1262	n:30000
GDF10   30000 perm   6 sec   (5115 perm/sec)   p_kst 4.206667e-02   p_cons 8.080667e-01   p_joint 1.423333e-01

Joint ci ratio: 5.294504e-02	ci left: 1.173248e-01	ci right 1.237304e-01	k: 4820	n:40000
Cons ci ratio: 9.551384e-03	ci left: 8.042061e-01	ci right 8.119492e-01	k: 32324	n:40000
KS ci ratio: 9.434231e-02	ci left: 3.941973e-02	ci right 4.334720e-02	k: 1654	n:40000
GDF10   40000 perm   8 sec   (4959 perm/sec)   p_kst 4.135000e-02   p_cons 8.081000e-01   p_joint 1.205000e-01

Outputting figure to mutsig2_images.part000000000069/GDF10.4_1449_40000_0.04135_0.8081_0.1205.png
                gene_name: GDF10
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.041 
        ci_ks_bounds_left: 0.039 
       ci_ks_bounds_right: 0.043 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 44 percent done.
GDF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.169352e-02	ci left: 3.555546e-01	ci right 3.745241e-01	k: 3650	n:10000
Cons ci ratio: 2.417799e-02	ci left: 7.155281e-01	ci right 7.331411e-01	k: 7244	n:10000
KS ci ratio: 6.675595e-02	ci left: 2.477650e-01	ci right 2.649772e-01	k: 2563	n:10000
GDF3   10000 perm   2 sec   (6041 perm/sec)   p_kst 2.563000e-01   p_cons 7.244000e-01   p_joint 3.650000e-01

Outputting figure to mutsig2_images.part000000000069/GDF3.4_1103_10000_0.2563_0.7244_0.365.png
                gene_name: GDF3
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 46 percent done.
GDF5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.829633e-02	ci left: 6.480036e-01	ci right 6.667046e-01	k: 6574	n:10000
KS ci ratio: 1.179038e-02	ci left: 9.115235e-01	ci right 9.224322e-01	k: 9171	n:10000
GDF5   10000 perm   2 sec   (5876 perm/sec)   p_kst 9.171000e-01   p_cons 6.574000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000069/GDF5.4_1514_10000_0.9171_0.6574_1.png
                gene_name: GDF5
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 48 percent done.
GAPVD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.183877e-02	ci left: 3.542622e-01	ci right 3.732173e-01	k: 3637	n:10000
Cons ci ratio: 2.113385e-02	ci left: 7.664836e-01	ci right 7.829561e-01	k: 7748	n:10000
KS ci ratio: 6.548479e-02	ci left: 2.550834e-01	ci right 2.724544e-01	k: 2637	n:10000
GAPVD1   10000 perm   2 sec   (4561 perm/sec)   p_kst 2.637000e-01   p_cons 7.748000e-01   p_joint 3.637000e-01

Outputting figure to mutsig2_images.part000000000069/GAPVD1.3_4568_10000_0.2637_0.7748_0.3637.png
                gene_name: GAPVD1
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 50 percent done.
GART
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.196322e-02	ci left: 5.909224e-01	ci right 6.102190e-01	k: 6006	n:10000
Cons ci ratio: 5.716943e-02	ci left: 3.105631e-01	ci right 3.289420e-01	k: 3197	n:10000
KS ci ratio: 5.918727e-02	ci left: 2.957857e-01	ci right 3.139281e-01	k: 3048	n:10000
GART   10000 perm   2 sec   (5201 perm/sec)   p_kst 3.048000e-01   p_cons 3.197000e-01   p_joint 6.006000e-01

Outputting figure to mutsig2_images.part000000000069/GART.3_3121_10000_0.3048_0.3197_0.6006.png
                gene_name: GART
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 52 percent done.
GAS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.142599e-01	ci left: 9.925222e-02	ci right 1.113788e-01	k: 1052	n:10000
Cons ci ratio: 3.805849e-02	ci left: 5.048513e-01	ci right 5.245401e-01	k: 5147	n:10000
KS ci ratio: 1.561224e-01	ci left: 5.465342e-02	ci right 6.400534e-02	k: 592	n:10000
GAS2   10000 perm   2 sec   (6360 perm/sec)   p_kst 5.920000e-02   p_cons 5.147000e-01   p_joint 1.052000e-01

Joint ci ratio: 9.914022e-02	ci left: 6.889464e-02	ci right 7.613023e-02	k: 1449	n:20000
Cons ci ratio: 2.665328e-02	ci left: 5.125984e-01	ci right 5.264960e-01	k: 10391	n:20000
KS ci ratio: 1.099548e-01	ci left: 5.645556e-02	ci right 6.307314e-02	k: 1194	n:20000
GAS2   20000 perm   4 sec   (5577 perm/sec)   p_kst 5.970000e-02   p_cons 5.195500e-01   p_joint 7.245000e-02

Joint ci ratio: 8.145405e-02	ci left: 6.874012e-02	ci right 7.460982e-02	k: 2149	n:30000
Cons ci ratio: 2.159993e-02	ci left: 5.176295e-01	ci right 5.289660e-01	k: 15699	n:30000
KS ci ratio: 8.963224e-02	ci left: 5.724078e-02	ci right 6.264483e-02	k: 1797	n:30000
GAS2   30000 perm   6 sec   (5269 perm/sec)   p_kst 5.990000e-02   p_cons 5.233000e-01   p_joint 7.163333e-02

Outputting figure to mutsig2_images.part000000000069/GAS2.3_970_30000_0.0599_0.5233_0.071633.png
                gene_name: GAS2
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.060 
        ci_ks_bounds_left: 0.057 
       ci_ks_bounds_right: 0.063 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.072 
     ci_joint_bounds_left: 0.069 
    ci_joint_bounds_right: 0.075 

Current progress: 54 percent done.
GAS2L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.797044e-02	ci left: 6.532365e-01	ci right 6.718687e-01	k: 6626	n:10000
Cons ci ratio: 5.579244e-02	ci left: 3.211817e-01	ci right 3.397172e-01	k: 3304	n:10000
KS ci ratio: 1.055229e-02	ci left: 9.274055e-01	ci right 9.373408e-01	k: 9325	n:10000
GAS2L2   10000 perm   2 sec   (5551 perm/sec)   p_kst 9.325000e-01   p_cons 3.304000e-01   p_joint 6.626000e-01

Outputting figure to mutsig2_images.part000000000069/GAS2L2.3_2667_10000_0.9325_0.3304_0.6626.png
                gene_name: GAS2L2
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 56 percent done.
GAS2L3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.472158e-02	ci left: 5.505053e-01	ci right 5.700595e-01	k: 5603	n:10000
Cons ci ratio: 6.565379e-02	ci left: 2.540943e-01	ci right 2.714441e-01	k: 2627	n:10000
KS ci ratio: 1.465614e-02	ci left: 8.708117e-01	ci right 8.837677e-01	k: 8774	n:10000
GAS2L3   10000 perm   2 sec   (5433 perm/sec)   p_kst 8.774000e-01   p_cons 2.627000e-01   p_joint 5.603000e-01

Outputting figure to mutsig2_images.part000000000069/GAS2L3.3_2117_10000_0.8774_0.2627_0.5603.png
                gene_name: GAS2L3
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 58 percent done.
GATA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.616784e-02	ci left: 5.302713e-01	ci right 5.499054e-01	k: 5401	n:10000
Cons ci ratio: 4.688919e-02	ci left: 4.016326e-01	ci right 4.210191e-01	k: 4113	n:10000
KS ci ratio: 3.503973e-02	ci left: 5.459963e-01	ci right 5.655712e-01	k: 5558	n:10000
GATA1   10000 perm   2 sec   (6455 perm/sec)   p_kst 5.558000e-01   p_cons 4.113000e-01   p_joint 5.401000e-01

Outputting figure to mutsig2_images.part000000000069/GATA1.3_1262_10000_0.5558_0.4113_0.5401.png
                gene_name: GATA1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 60 percent done.
GCC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.738645e-02	ci left: 3.965527e-01	ci right 4.159020e-01	k: 4062	n:10000
Cons ci ratio: 7.886657e-02	ci left: 1.902285e-01	ci right 2.059478e-01	k: 1980	n:10000
KS ci ratio: 3.890521e-02	ci left: 4.938506e-01	ci right 5.135473e-01	k: 5037	n:10000
GCC1   10000 perm   2 sec   (5534 perm/sec)   p_kst 5.037000e-01   p_cons 1.980000e-01   p_joint 4.062000e-01

Outputting figure to mutsig2_images.part000000000069/GCC1.3_2336_10000_0.5037_0.198_0.4062.png
                gene_name: GCC1
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 62 percent done.
GCET2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.534601e-02	ci left: 4.178757e-01	ci right 4.373665e-01	k: 4276	n:10000
Cons ci ratio: 1.151790e-01	ci left: 9.779067e-02	ci right 1.098412e-01	k: 1037	n:10000
KS ci ratio: 2.248092e-02	ci left: 7.439188e-01	ci right 7.609339e-01	k: 7525	n:10000
GCET2   10000 perm   2 sec   (6277 perm/sec)   p_kst 7.525000e-01   p_cons 1.037000e-01   p_joint 4.276000e-01

Joint ci ratio: 3.197581e-02	ci left: 4.221264e-01	ci right 4.358942e-01	k: 8580	n:20000
Cons ci ratio: 8.137980e-02	ci left: 9.970398e-02	ci right 1.082116e-01	k: 2078	n:20000
KS ci ratio: 1.581119e-02	ci left: 7.484736e-01	ci right 7.604524e-01	k: 15090	n:20000
GCET2   20000 perm   4 sec   (5662 perm/sec)   p_kst 7.545000e-01   p_cons 1.039000e-01   p_joint 4.290000e-01

Outputting figure to mutsig2_images.part000000000069/GCET2.3_567_20000_0.7545_0.1039_0.429.png
                gene_name: GCET2
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.100 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 64 percent done.
GCG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.898055e-02	ci left: 2.356076e-01	ci right 2.525417e-01	k: 2440	n:10000
Cons ci ratio: 2.755871e-02	ci left: 6.598801e-01	ci right 6.784213e-01	k: 6692	n:10000
KS ci ratio: 1.018103e-01	ci left: 1.224889e-01	ci right 1.357280e-01	k: 1290	n:10000
GCG   10000 perm   1 sec   (6938 perm/sec)   p_kst 1.290000e-01   p_cons 6.692000e-01   p_joint 2.440000e-01

Joint ci ratio: 5.043875e-02	ci left: 2.260652e-01	ci right 2.378129e-01	k: 4638	n:20000
Cons ci ratio: 1.960441e-02	ci left: 6.599674e-01	ci right 6.730842e-01	k: 13331	n:20000
KS ci ratio: 7.341911e-02	ci left: 1.201511e-01	ci right 1.293583e-01	k: 2494	n:20000
GCG   20000 perm   3 sec   (6008 perm/sec)   p_kst 1.247000e-01   p_cons 6.665500e-01   p_joint 2.319000e-01

Outputting figure to mutsig2_images.part000000000069/GCG.3_563_20000_0.1247_0.66655_0.2319.png
                gene_name: GCG
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 66 percent done.
GCM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.689464e-02	ci left: 3.126467e-01	ci right 3.310572e-01	k: 3218	n:10000
Cons ci ratio: 9.117616e-02	ci left: 1.488410e-01	ci right 1.631600e-01	k: 1559	n:10000
KS ci ratio: 7.605201e-02	ci left: 2.018551e-01	ci right 2.179143e-01	k: 2098	n:10000
GCM2   10000 perm   2 sec   (6224 perm/sec)   p_kst 2.098000e-01   p_cons 1.559000e-01   p_joint 3.218000e-01

Outputting figure to mutsig2_images.part000000000069/GCM2.3_1541_10000_0.2098_0.1559_0.3218.png
                gene_name: GCM2
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 68 percent done.
GCNT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.942915e-02	ci left: 7.948639e-01	ci right 8.105594e-01	k: 8028	n:10000
Cons ci ratio: 4.182965e-02	ci left: 4.576816e-01	ci right 4.773374e-01	k: 4675	n:10000
KS ci ratio: 3.002544e-02	ci left: 6.206514e-01	ci right 6.396727e-01	k: 6302	n:10000
GCNT1   10000 perm   2 sec   (6384 perm/sec)   p_kst 6.302000e-01   p_cons 4.675000e-01   p_joint 8.028000e-01

Outputting figure to mutsig2_images.part000000000069/GCNT1.3_1291_10000_0.6302_0.4675_0.8028.png
                gene_name: GCNT1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 70 percent done.
GDE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.100950e-02	ci left: 2.831991e-01	ci right 3.011221e-01	k: 2921	n:10000
Cons ci ratio: 2.672870e-02	ci left: 6.733749e-01	ci right 6.917187e-01	k: 6826	n:10000
KS ci ratio: 8.938381e-02	ci left: 1.540423e-01	ci right 1.685555e-01	k: 1612	n:10000
GDE1   10000 perm   2 sec   (6651 perm/sec)   p_kst 1.612000e-01   p_cons 6.826000e-01   p_joint 2.921000e-01

Outputting figure to mutsig2_images.part000000000069/GDE1.3_1020_10000_0.1612_0.6826_0.2921.png
                gene_name: GDE1
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 72 percent done.
GAPDH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.238882e-01	ci left: 8.533549e-02	ci right 9.670407e-02	k: 909	n:10000
Cons ci ratio: 1.205647e-01	ci left: 8.980798e-02	ci right 1.014288e-01	k: 955	n:10000
KS ci ratio: 3.189665e-02	ci left: 5.919262e-01	ci right 6.112146e-01	k: 6016	n:10000
GAPDH   10000 perm   1 sec   (7123 perm/sec)   p_kst 6.016000e-01   p_cons 9.550000e-02   p_joint 9.090000e-02

Joint ci ratio: 8.522918e-02	ci left: 9.155886e-02	ci right 9.975913e-02	k: 1912	n:20000
Cons ci ratio: 8.385469e-02	ci left: 9.435467e-02	ci right 1.026625e-01	k: 1969	n:20000
KS ci ratio: 2.246861e-02	ci left: 5.966308e-01	ci right 6.102391e-01	k: 12069	n:20000
GAPDH   20000 perm   3 sec   (6157 perm/sec)   p_kst 6.034500e-01   p_cons 9.845000e-02   p_joint 9.560000e-02

Outputting figure to mutsig2_images.part000000000069/GAPDH.2_1040_20000_0.60345_0.09845_0.0956.png
                gene_name: GAPDH
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.098 
      ci_cons_bounds_left: 0.094 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.096 
     ci_joint_bounds_left: 0.092 
    ci_joint_bounds_right: 0.100 

Current progress: 74 percent done.
GAS8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.854166e-02	ci left: 6.440798e-01	ci right 6.628308e-01	k: 6535	n:10000
Cons ci ratio: 3.341548e-02	ci left: 5.693517e-01	ci right 5.888022e-01	k: 5791	n:10000
KS ci ratio: 2.630407e-02	ci left: 6.803271e-01	ci right 6.985625e-01	k: 6895	n:10000
GAS8   10000 perm   2 sec   (6383 perm/sec)   p_kst 6.895000e-01   p_cons 5.791000e-01   p_joint 6.535000e-01

Outputting figure to mutsig2_images.part000000000069/GAS8.2_1481_10000_0.6895_0.5791_0.6535.png
                gene_name: GAS8
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 76 percent done.
GATA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.607453e-01	ci left: 1.921493e-02	ci right 2.506805e-02	k: 220	n:10000
Cons ci ratio: 1.578270e-01	ci left: 5.349797e-02	ci right 6.276153e-02	k: 580	n:10000
KS ci ratio: 1.562625e-01	ci left: 5.455711e-02	ci right 6.390171e-02	k: 591	n:10000
GATA6   10000 perm   2 sec   (6192 perm/sec)   p_kst 5.910000e-02   p_cons 5.800000e-02   p_joint 2.200000e-02

Joint ci ratio: 3.913688e-02	ci left: 3.274630e-01	ci right 3.405852e-01	k: 6680	n:20000
Cons ci ratio: 1.152266e-01	ci left: 5.153982e-02	ci right 5.789042e-02	k: 1093	n:20000
KS ci ratio: 1.117562e-01	ci left: 5.470261e-02	ci right 6.122664e-02	k: 1158	n:20000
GATA6   20000 perm   4 sec   (5450 perm/sec)   p_kst 5.790000e-02   p_cons 5.465000e-02   p_joint 3.340000e-01

Joint ci ratio: 3.170657e-02	ci left: 3.321485e-01	ci right 3.428830e-01	k: 10125	n:30000
Cons ci ratio: 9.423476e-02	ci left: 5.195785e-02	ci right 5.712884e-02	k: 1635	n:30000
KS ci ratio: 9.159933e-02	ci left: 5.489200e-02	ci right 6.019409e-02	k: 1725	n:30000
GATA6   30000 perm   6 sec   (5166 perm/sec)   p_kst 5.750000e-02   p_cons 5.450000e-02   p_joint 3.375000e-01

Outputting figure to mutsig2_images.part000000000069/GATA6.2_1812_30000_0.0575_0.0545_0.3375.png
                gene_name: GATA6
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.058 
        ci_ks_bounds_left: 0.055 
       ci_ks_bounds_right: 0.060 
                   p_cons: 0.054 
      ci_cons_bounds_left: 0.052 
     ci_cons_bounds_right: 0.057 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 78 percent done.
GBE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.400872e-02	ci left: 8.804271e-01	ci right 8.929466e-01	k: 8868	n:10000
KS ci ratio: 3.492635e-02	ci left: 5.475994e-01	ci right 5.671671e-01	k: 5574	n:10000
GBE1   10000 perm   2 sec   (6020 perm/sec)   p_kst 5.574000e-01   p_cons 8.868000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000069/GBE1.2_2173_10000_0.5574_0.8868_1.png
                gene_name: GBE1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
GBGT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.582155e-02	ci left: 4.127924e-01	ci right 4.322528e-01	k: 4225	n:10000
Cons ci ratio: 5.617279e-02	ci left: 3.182039e-01	ci right 3.366967e-01	k: 3274	n:10000
KS ci ratio: 3.465118e-02	ci left: 5.515074e-01	ci right 5.710568e-01	k: 5613	n:10000
GBGT1   10000 perm   1 sec   (6739 perm/sec)   p_kst 5.613000e-01   p_cons 3.274000e-01   p_joint 4.225000e-01

Outputting figure to mutsig2_images.part000000000069/GBGT1.2_1068_10000_0.5613_0.3274_0.4225.png
                gene_name: GBGT1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 82 percent done.
GBP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.167954e-02	ci left: 1.794983e-01	ci right 1.948844e-01	k: 1871	n:10000
Cons ci ratio: 8.770386e-02	ci left: 1.591483e-01	ci right 1.738466e-01	k: 1664	n:10000
KS ci ratio: 3.708756e-02	ci left: 5.177583e-01	ci right 5.374256e-01	k: 5276	n:10000
GBP6   10000 perm   2 sec   (6079 perm/sec)   p_kst 5.276000e-01   p_cons 1.664000e-01   p_joint 1.871000e-01

Outputting figure to mutsig2_images.part000000000069/GBP6.2_1942_10000_0.5276_0.1664_0.1871.png
                gene_name: GBP6
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 84 percent done.
GCA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.846095e-01	ci left: 4.932166e-03	ci right 8.165407e-03	k: 64	n:10000
Cons ci ratio: 7.534834e-02	ci left: 2.049112e-01	ci right 2.210563e-01	k: 2129	n:10000
KS ci ratio: 3.823649e-01	ci left: 8.414755e-03	ci right 1.247803e-02	k: 103	n:10000
GCA   10000 perm   1 sec   (7028 perm/sec)   p_kst 1.030000e-02   p_cons 2.129000e-01   p_joint 6.400000e-03

Joint ci ratio: 3.660847e-01	ci left: 4.658600e-03	ci right 6.788973e-03	k: 113	n:20000
Cons ci ratio: 5.368043e-02	ci left: 2.048181e-01	ci right 2.161662e-01	k: 4209	n:20000
KS ci ratio: 2.658944e-01	ci left: 9.320579e-03	ci right 1.222429e-02	k: 214	n:20000
GCA   20000 perm   3 sec   (6138 perm/sec)   p_kst 1.070000e-02   p_cons 2.104500e-01   p_joint 5.650000e-03

Joint ci ratio: 2.980342e-01	ci left: 4.879595e-03	ci right 6.618225e-03	k: 171	n:30000
Cons ci ratio: 4.411334e-02	ci left: 2.037495e-01	ci right 2.129737e-01	k: 6250	n:30000
KS ci ratio: 2.142673e-01	ci left: 9.850602e-03	ci right 1.224550e-02	k: 330	n:30000
GCA   30000 perm   5 sec   (5800 perm/sec)   p_kst 1.100000e-02   p_cons 2.083333e-01   p_joint 5.700000e-03

Joint ci ratio: 2.390951e-01	ci left: 5.876993e-03	ci right 7.495874e-03	k: 266	n:40000
Cons ci ratio: 4.003031e-02	ci left: 1.894897e-01	ci right 1.972549e-01	k: 7734	n:40000
KS ci ratio: 1.854201e-01	ci left: 1.002482e-02	ci right 1.209707e-02	k: 441	n:40000
GCA   40000 perm   7 sec   (5576 perm/sec)   p_kst 1.102500e-02   p_cons 1.933500e-01   p_joint 6.650000e-03

Joint ci ratio: 2.067244e-01	ci left: 6.401757e-03	ci right 7.896323e-03	k: 356	n:50000
Cons ci ratio: 3.592809e-02	ci left: 1.888336e-01	ci right 1.957621e-01	k: 9614	n:50000
KS ci ratio: 1.621038e-01	ci left: 1.062229e-02	ci right 1.251505e-02	k: 577	n:50000
GCA   50000 perm   9 sec   (5406 perm/sec)   p_kst 1.154000e-02   p_cons 1.922800e-01   p_joint 7.120000e-03

Joint ci ratio: 2.039939e-01	ci left: 5.492623e-03	ci right 6.755865e-03	k: 366	n:60000
Cons ci ratio: 3.271877e-02	ci left: 1.898819e-01	ci right 1.962145e-01	k: 11582	n:60000
KS ci ratio: 1.477217e-01	ci left: 1.074252e-02	ci right 1.247187e-02	k: 695	n:60000
GCA   60000 perm   11 sec   (5245 perm/sec)   p_kst 1.158333e-02   p_cons 1.930333e-01   p_joint 6.100000e-03

Joint ci ratio: 1.904724e-01	ci left: 5.441317e-03	ci right 6.600205e-03	k: 420	n:70000
Cons ci ratio: 3.031882e-02	ci left: 1.898406e-01	ci right 1.956992e-01	k: 13493	n:70000
KS ci ratio: 1.377977e-01	ci left: 1.064053e-02	ci right 1.222893e-02	k: 799	n:70000
GCA   70000 perm   14 sec   (5112 perm/sec)   p_kst 1.141429e-02   p_cons 1.927571e-01   p_joint 6.000000e-03

Joint ci ratio: 1.379845e-01	ci left: 9.297941e-03	ci right 1.068794e-02	k: 798	n:80000
Cons ci ratio: 2.832850e-02	ci left: 1.903821e-01	ci right 1.958652e-01	k: 15449	n:80000
KS ci ratio: 1.289899e-01	ci left: 1.067587e-02	ci right 1.215988e-02	k: 912	n:80000
GCA   80000 perm   16 sec   (4990 perm/sec)   p_kst 1.140000e-02   p_cons 1.931125e-01   p_joint 9.975000e-03

Joint ci ratio: 1.312691e-01	ci left: 9.166704e-03	ci right 1.046518e-02	k: 882	n:90000
Cons ci ratio: 2.673626e-02	ci left: 1.902160e-01	ci right 1.953816e-01	k: 17351	n:90000
KS ci ratio: 1.226514e-01	ci left: 1.053348e-02	ci right 1.192052e-02	k: 1009	n:90000
GCA   90000 perm   18 sec   (4873 perm/sec)   p_kst 1.121111e-02   p_cons 1.927889e-01   p_joint 9.800000e-03

Joint ci ratio: 1.472189e-01	ci left: 6.521501e-03	ci right 7.567398e-03	k: 703	n:100000
Cons ci ratio: 2.539199e-02	ci left: 1.900106e-01	ci right 1.949073e-01	k: 19245	n:100000
KS ci ratio: 1.162643e-01	ci left: 1.058610e-02	ci right 1.190248e-02	k: 1123	n:100000
GCA   100000 perm   21 sec   (4766 perm/sec)   p_kst 1.123000e-02   p_cons 1.924500e-01   p_joint 7.030000e-03

Joint ci ratio: 1.184729e-01	ci left: 9.270387e-03	ci right 1.044658e-02	k: 1083	n:110000
Cons ci ratio: 2.421853e-02	ci left: 1.900198e-01	ci right 1.946873e-01	k: 21158	n:110000
KS ci ratio: 1.110993e-01	ci left: 1.056879e-02	ci right 1.182081e-02	k: 1230	n:110000
GCA   110000 perm   24 sec   (4665 perm/sec)   p_kst 1.118182e-02   p_cons 1.923455e-01   p_joint 9.845455e-03

Joint ci ratio: 1.086383e-01	ci left: 1.014989e-02	ci right 1.132394e-02	k: 1287	n:120000
Cons ci ratio: 2.317415e-02	ci left: 1.902975e-01	ci right 1.947674e-01	k: 23103	n:120000
KS ci ratio: 1.070124e-01	ci left: 1.046621e-02	ci right 1.165759e-02	k: 1326	n:120000
GCA   120000 perm   26 sec   (4569 perm/sec)   p_kst 1.105000e-02   p_cons 1.925250e-01   p_joint 1.072500e-02

Joint ci ratio: 9.874695e-02	ci left: 1.138514e-02	ci right 1.257524e-02	k: 1556	n:130000
Cons ci ratio: 2.224538e-02	ci left: 1.906586e-01	ci right 1.949552e-01	k: 25064	n:130000
KS ci ratio: 1.025830e-01	ci left: 1.053755e-02	ci right 1.168441e-02	k: 1443	n:130000
GCA   130000 perm   29 sec   (4480 perm/sec)   p_kst 1.110000e-02   p_cons 1.928000e-01   p_joint 1.196923e-02

Joint ci ratio: 9.068281e-02	ci left: 1.257377e-02	ci right 1.377509e-02	k: 1843	n:140000
Cons ci ratio: 2.144755e-02	ci left: 1.905727e-01	ci right 1.947114e-01	k: 26969	n:140000
KS ci ratio: 9.856590e-02	ci left: 1.062048e-02	ci right 1.172848e-02	k: 1563	n:140000
GCA   140000 perm   32 sec   (4395 perm/sec)   p_kst 1.116429e-02   p_cons 1.926357e-01   p_joint 1.316429e-02

Outputting figure to mutsig2_images.part000000000069/GCA.2_686_140000_0.011164_0.19264_0.013164.png
                gene_name: GCA
               theta_stop: 0.099 
                    nperm: 140000 
                     p_ks: 0.011 
        ci_ks_bounds_left: 0.011 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.013 
     ci_joint_bounds_left: 0.013 
    ci_joint_bounds_right: 0.014 

Current progress: 86 percent done.
GCDH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.147127e-02	ci left: 3.575431e-01	ci right 3.765344e-01	k: 3670	n:10000
Cons ci ratio: 1.279515e-01	ci left: 8.028489e-02	ci right 9.135778e-02	k: 857	n:10000
KS ci ratio: 5.982159e-02	ci left: 2.913250e-01	ci right 3.093915e-01	k: 3003	n:10000
GCDH   10000 perm   2 sec   (6451 perm/sec)   p_kst 3.003000e-01   p_cons 8.570000e-02   p_joint 3.670000e-01

Joint ci ratio: 1.152266e-01	ci left: 5.153982e-02	ci right 5.789042e-02	k: 1093	n:20000
Cons ci ratio: 1.248127e-01	ci left: 4.405941e-02	ci right 4.997318e-02	k: 939	n:20000
KS ci ratio: 4.308313e-02	ci left: 2.863996e-01	ci right 2.990607e-01	k: 5854	n:20000
GCDH   20000 perm   4 sec   (5615 perm/sec)   p_kst 2.927000e-01   p_cons 4.695000e-02   p_joint 5.465000e-02

Joint ci ratio: 1.086744e-01	ci left: 3.930342e-02	ci right 4.385257e-02	k: 1246	n:30000
Cons ci ratio: 1.003877e-01	ci left: 4.593359e-02	ci right 5.082101e-02	k: 1450	n:30000
KS ci ratio: 3.503200e-02	ci left: 2.892791e-01	ci right 2.996274e-01	k: 8833	n:30000
GCDH   30000 perm   6 sec   (5309 perm/sec)   p_kst 2.944333e-01   p_cons 4.833333e-02   p_joint 4.153333e-02

Joint ci ratio: 5.222095e-02	ci left: 1.202412e-01	ci right 1.267135e-01	k: 4938	n:40000
Cons ci ratio: 8.678949e-02	ci left: 4.641514e-02	ci right 5.065071e-02	k: 1940	n:40000
KS ci ratio: 3.042769e-02	ci left: 2.887664e-01	ci right 2.977137e-01	k: 11729	n:40000
GCDH   40000 perm   8 sec   (5128 perm/sec)   p_kst 2.932250e-01   p_cons 4.850000e-02   p_joint 1.234500e-01

Outputting figure to mutsig2_images.part000000000069/GCDH.2_1409_40000_0.29323_0.0485_0.12345.png
                gene_name: GCDH
               theta_stop: 0.087 
                    nperm: 40000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.049 
      ci_cons_bounds_left: 0.046 
     ci_cons_bounds_right: 0.051 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 88 percent done.
GCLC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.290929e-02	ci left: 7.367410e-01	ci right 7.539159e-01	k: 7454	n:10000
Cons ci ratio: 1.017651e-01	ci left: 1.225867e-01	ci right 1.358301e-01	k: 1291	n:10000
KS ci ratio: 3.200320e-02	ci left: 5.903202e-01	ci right 6.096215e-01	k: 6000	n:10000
GCLC   10000 perm   2 sec   (6115 perm/sec)   p_kst 6.000000e-01   p_cons 1.291000e-01   p_joint 7.454000e-01

Joint ci ratio: 1.666270e-02	ci left: 7.283714e-01	ci right 7.406603e-01	k: 14691	n:20000
Cons ci ratio: 7.425455e-02	ci left: 1.177403e-01	ci right 1.268698e-01	k: 2445	n:20000
KS ci ratio: 2.236314e-02	ci left: 5.988871e-01	ci right 6.124821e-01	k: 12114	n:20000
GCLC   20000 perm   4 sec   (5386 perm/sec)   p_kst 6.057000e-01   p_cons 1.222500e-01   p_joint 7.345500e-01

Outputting figure to mutsig2_images.part000000000069/GCLC.2_1978_20000_0.6057_0.12225_0.73455.png
                gene_name: GCLC
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.74 

Current progress: 90 percent done.
GCNT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.202335e-02	ci left: 4.553853e-01	ci right 4.750350e-01	k: 4652	n:10000
Cons ci ratio: 5.051047e-02	ci left: 3.662946e-01	ci right 3.853777e-01	k: 3758	n:10000
KS ci ratio: 5.688161e-02	ci left: 3.127459e-01	ci right 3.311579e-01	k: 3219	n:10000
GCNT2   10000 perm   2 sec   (5493 perm/sec)   p_kst 3.219000e-01   p_cons 3.758000e-01   p_joint 4.652000e-01

Outputting figure to mutsig2_images.part000000000069/GCNT2.2_3073_10000_0.3219_0.3758_0.4652.png
                gene_name: GCNT2
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 92 percent done.
GCNT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.456575e-02	ci left: 7.090681e-01	ci right 7.268048e-01	k: 7180	n:10000
KS ci ratio: 9.038022e-03	ci left: 9.451295e-01	ci right 9.538063e-01	k: 9496	n:10000
GCNT3   10000 perm   1 sec   (6918 perm/sec)   p_kst 9.496000e-01   p_cons 7.180000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000069/GCNT3.2_1321_10000_0.9496_0.718_1.png
                gene_name: GCNT3
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
GDAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.324517e-02	ci left: 3.420374e-01	ci right 3.608492e-01	k: 3514	n:10000
Cons ci ratio: 3.625527e-02	ci left: 5.290697e-01	ci right 5.487076e-01	k: 5389	n:10000
KS ci ratio: 1.132409e-01	ci left: 1.009091e-01	ci right 1.131209e-01	k: 1069	n:10000
GDAP1   10000 perm   1 sec   (6708 perm/sec)   p_kst 1.069000e-01   p_cons 5.389000e-01   p_joint 3.514000e-01

Joint ci ratio: 3.845633e-02	ci left: 3.352746e-01	ci right 3.484714e-01	k: 6837	n:20000
Cons ci ratio: 2.530206e-02	ci left: 5.385180e-01	ci right 5.523688e-01	k: 10909	n:20000
KS ci ratio: 7.988696e-02	ci left: 1.031412e-01	ci right 1.117733e-01	k: 2148	n:20000
GDAP1   20000 perm   3 sec   (5846 perm/sec)   p_kst 1.074000e-01   p_cons 5.454500e-01   p_joint 3.418500e-01

Outputting figure to mutsig2_images.part000000000069/GDAP1.2_1101_20000_0.1074_0.54545_0.34185.png
                gene_name: GDAP1
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 96 percent done.
GDF15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.379870e-02	ci left: 8.834987e-01	ci right 8.958733e-01	k: 8898	n:10000
KS ci ratio: 3.071196e-02	ci left: 6.100009e-01	ci right 6.291294e-01	k: 6196	n:10000
GDF15   10000 perm   1 sec   (6793 perm/sec)   p_kst 6.196000e-01   p_cons 8.898000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000069/GDF15.2_935_10000_0.6196_0.8898_1.png
                gene_name: GDF15
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
GDF6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.342158e-02	ci left: 1.426620e-01	ci right 1.567427e-01	k: 1496	n:10000
Cons ci ratio: 1.714031e-01	ci left: 4.542628e-02	ci right 5.403844e-02	k: 496	n:10000
KS ci ratio: 5.184518e-03	ci left: 9.801637e-01	ci right 9.853496e-01	k: 9829	n:10000
GDF6   10000 perm   2 sec   (6309 perm/sec)   p_kst 9.829000e-01   p_cons 4.960000e-02   p_joint 1.496000e-01

Joint ci ratio: 4.827806e-03	ci left: 9.681644e-01	ci right 9.728975e-01	k: 19412	n:20000
Cons ci ratio: 1.200634e-01	ci left: 4.755432e-02	ci right 5.367717e-02	k: 1011	n:20000
KS ci ratio: 3.511586e-03	ci left: 9.824273e-01	ci right 9.859299e-01	k: 19685	n:20000
GDF6   20000 perm   4 sec   (5586 perm/sec)   p_kst 9.842500e-01   p_cons 5.055000e-02   p_joint 9.706000e-01

Joint ci ratio: 3.991204e-03	ci left: 9.678694e-01	ci right 9.717722e-01	k: 29096	n:30000
Cons ci ratio: 9.735842e-02	ci left: 4.876538e-02	ci right 5.378864e-02	k: 1537	n:30000
KS ci ratio: 2.928177e-03	ci left: 9.820636e-01	ci right 9.849750e-01	k: 29507	n:30000
GDF6   30000 perm   6 sec   (5308 perm/sec)   p_kst 9.835667e-01   p_cons 5.123333e-02   p_joint 9.698667e-01

Outputting figure to mutsig2_images.part000000000069/GDF6.2_1376_30000_0.98357_0.051233_0.96987.png
                gene_name: GDF6
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.051 
      ci_cons_bounds_left: 0.049 
     ci_cons_bounds_right: 0.054 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.97 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000069
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 69 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1538>
Subject: Job 8004102: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1538>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000070> was used as the working directory.
Started at Sun Nov 11 15:06:11 2012
Results reported at Sun Nov 11 15:15:36 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000070.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000070.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 70  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000070.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    644.43 sec.
    Max Memory :      4775 MB
    Max Swap   :      7137 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
70
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 70
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 70: processing genes 6243 - 6333
Calculating significance of each gene.
Using projection method.
6243	GDF7	1
6244	GDF9	8.159725e-01
6245	GDI1	7.403388e-01
6246	GDI2	4.921223e-01
6247	GDNF	1.576271e-02
6248	GDPD1	1
6249	GDPD2	1
6250	GDPD3	4.732168e-01
6251	GDPD4	1.752383e-01
6252	GDPD5	6.418864e-01
6253	GEFT	5.858327e-01
6254	GEM	1
6255	GEMIN4	9.760401e-01
6256	GEMIN5	9.310780e-01
6257	GEMIN6	1
6258	GEMIN7	1
6259	GEMIN8	2.115259e-01
6260	GEN1	4.803061e-01
6261	GET4	6.760987e-02
6262	GFAP	7.526692e-01
6263	GFER	2.728934e-01
6264	GFI1	1.598490e-01
6265	GFI1B	1.012692e-01
6266	GFM1	8.665192e-01
6267	GFM2	1
6268	GFOD1	2.117495e-01
6269	GFOD2	2.452776e-01
6270	GFPT1	8.299574e-01
6271	GFPT2	5.658123e-01
6272	GFRA1	1
6273	GFRA2	1
6274	GFRA3	1
6275	GFRAL	5.239534e-02
6276	GGA1	1
6277	GGA2	8.951494e-01
6278	GGA3	9.032383e-01
6279	GGCT	7.959565e-02
6280	GGCX	1
6281	GGH	2.279630e-01
6282	GGN	7.745259e-01
6283	GGNBP2	2.573531e-01
6284	GGPS1	3.560708e-01
6285	GGT1	8.903572e-01
6286	GGT5	1
6287	GGT6	1
6288	GGT7	5.026740e-01
6289	GGTLC1	1.338811e-02
6290	GGTLC2	3.365992e-01
6291	GH1	1.424055e-01
6292	GH2	3.428833e-01
6293	GHDC	6.836310e-01
6294	GHITM	4.024931e-01
6295	GHR	1
6296	GHRH	1
6297	GHRHR	8.807700e-02
6298	GHRL	1
6299	GHSR	1
6300	GIF	4.469778e-01
6301	GIGYF1	9.863719e-01
6302	GIGYF2	8.773824e-01
6303	GIMAP1	3.748775e-01
6304	GIMAP2	1.803818e-01
6305	GIMAP4	1
6306	GIMAP5	1.349456e-01
6307	GIMAP6	2.712720e-01
6308	GIMAP7	1
6309	GIMAP8	1
6310	GIN1	1.473710e-01
6311	GINS1	1
6312	GINS2	1
6313	GINS3	1
6314	GINS4	1
6315	GIP	4.883891e-01
6316	GIPC1	1
6317	GIPC2	1.554545e-01
6318	GIPC3	1.540386e-01
6319	GIPR	1
6320	GIT1	9.636759e-01
6321	GIT2	1
6322	GJA1	3.203394e-02
6323	GJA10	3.742256e-01
6324	GJA3	1
6325	GJA4	7.216862e-01
6326	GJA5	5.540848e-01
6327	GJA8	3.587556e-01
6328	GJA9	3.825668e-01
6329	GJB1	1
6330	GJB2	5.379249e-01
6331	GJB3	1
6332	GJB4	1.457404e-01
6333	GJB5	1
Done

Running MutSig 2:
Scatter job 70: processing genes 6243 - 6333
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
GFRAL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.634652e-02	ci left: 8.447858e-01	ci right 8.588086e-01	k: 8519	n:10000
Cons ci ratio: 3.755134e-02	ci left: 5.115541e-01	ci right 5.312334e-01	k: 5214	n:10000
KS ci ratio: 1.570673e-02	ci left: 8.547786e-01	ci right 8.684100e-01	k: 8617	n:10000
GFRAL   10000 perm   2 sec   (4399 perm/sec)   p_kst 8.617000e-01   p_cons 5.214000e-01   p_joint 8.519000e-01

Outputting figure to mutsig2_images.part000000000070/GFRAL.12_1221_10000_0.8617_0.5214_0.8519.png
                gene_name: GFRAL
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 2 percent done.
GJA10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.599129e-02	ci left: 6.854671e-01	ci right 7.036194e-01	k: 6946	n:10000
Cons ci ratio: 6.007874e-02	ci left: 2.895409e-01	ci right 3.075765e-01	k: 2985	n:10000
KS ci ratio: 2.356728e-02	ci left: 7.257273e-01	ci right 7.431359e-01	k: 7345	n:10000
GJA10   10000 perm   2 sec   (5523 perm/sec)   p_kst 7.345000e-01   p_cons 2.985000e-01   p_joint 6.946000e-01

Outputting figure to mutsig2_images.part000000000070/GJA10.7_1634_10000_0.7345_0.2985_0.6946.png
                gene_name: GJA10
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.70 

Current progress: 4 percent done.
GH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.373646e-02	ci left: 7.228992e-01	ci right 7.403656e-01	k: 7317	n:10000
Cons ci ratio: 5.076980e-02	ci left: 3.639075e-01	ci right 3.829663e-01	k: 3734	n:10000
KS ci ratio: 1.350873e-02	ci left: 8.876989e-01	ci right 8.998707e-01	k: 8939	n:10000
GH2   10000 perm   2 sec   (6038 perm/sec)   p_kst 8.939000e-01   p_cons 3.734000e-01   p_joint 7.317000e-01

Outputting figure to mutsig2_images.part000000000070/GH2.5_1011_10000_0.8939_0.3734_0.7317.png
                gene_name: GH2
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 6 percent done.
GIMAP8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.855515e-02	ci left: 3.849027e-01	ci right 4.041588e-01	k: 3945	n:10000
Cons ci ratio: 7.321256e-02	ci left: 2.145771e-01	ci right 2.309847e-01	k: 2227	n:10000
KS ci ratio: 4.072075e-02	ci left: 4.710641e-01	ci right 4.907470e-01	k: 4809	n:10000
GIMAP8   10000 perm   2 sec   (5219 perm/sec)   p_kst 4.809000e-01   p_cons 2.227000e-01   p_joint 3.945000e-01

Outputting figure to mutsig2_images.part000000000070/GIMAP8.5_2014_10000_0.4809_0.2227_0.3945.png
                gene_name: GIMAP8
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 9 percent done.
GDNF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.541742e-02	ci left: 2.554791e-01	ci right 2.728584e-01	k: 2641	n:10000
Cons ci ratio: 6.633841e-02	ci left: 2.501382e-01	ci right 2.674026e-01	k: 2587	n:10000
KS ci ratio: 6.303106e-02	ci left: 2.700268e-01	ci right 2.877022e-01	k: 2788	n:10000
GDNF   10000 perm   2 sec   (6294 perm/sec)   p_kst 2.788000e-01   p_cons 2.587000e-01   p_joint 2.641000e-01

Outputting figure to mutsig2_images.part000000000070/GDNF.4_643_10000_0.2788_0.2587_0.2641.png
                gene_name: GDNF
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 11 percent done.
GDPD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.953620e-01	ci left: 3.490925e-02	ci right 4.256245e-02	k: 386	n:10000
Cons ci ratio: 1.138375e-01	ci left: 9.993440e-02	ci right 1.120962e-01	k: 1059	n:10000
KS ci ratio: 2.723101e-01	ci left: 1.753307e-02	ci right 2.315124e-02	k: 202	n:10000
GDPD4   10000 perm   2 sec   (5316 perm/sec)   p_kst 2.020000e-02   p_cons 1.059000e-01   p_joint 3.860000e-02

Joint ci ratio: 1.725682e-01	ci left: 2.297630e-02	ci right 2.736323e-02	k: 502	n:20000
Cons ci ratio: 7.994950e-02	ci left: 1.029939e-01	ci right 1.116206e-01	k: 2145	n:20000
KS ci ratio: 1.890231e-01	ci left: 1.905770e-02	ci right 2.308322e-02	k: 420	n:20000
GDPD4   20000 perm   4 sec   (4674 perm/sec)   p_kst 2.100000e-02   p_cons 1.072500e-01   p_joint 2.510000e-02

Joint ci ratio: 1.876765e-01	ci left: 1.298706e-02	ci right 1.570819e-02	k: 429	n:30000
Cons ci ratio: 6.790809e-02	ci left: 9.656177e-02	ci right 1.033826e-01	k: 2998	n:30000
KS ci ratio: 1.518392e-01	ci left: 2.008103e-02	ci right 2.341249e-02	k: 651	n:30000
GDPD4   30000 perm   7 sec   (4462 perm/sec)   p_kst 2.170000e-02   p_cons 9.993333e-02   p_joint 1.430000e-02

Joint ci ratio: 1.187944e-01	ci left: 2.492365e-02	ci right 2.809559e-02	k: 1059	n:40000
Cons ci ratio: 5.870164e-02	ci left: 9.734805e-02	ci right 1.032601e-01	k: 4011	n:40000
KS ci ratio: 1.307559e-01	ci left: 2.053641e-02	ci right 2.343356e-02	k: 878	n:40000
GDPD4   40000 perm   9 sec   (4307 perm/sec)   p_kst 2.195000e-02   p_cons 1.002750e-01   p_joint 2.647500e-02

Joint ci ratio: 1.137010e-01	ci left: 2.189823e-02	ci right 2.455752e-02	k: 1160	n:50000
Cons ci ratio: 5.253356e-02	ci left: 9.756159e-02	ci right 1.028449e-01	k: 5009	n:50000
KS ci ratio: 1.171019e-01	ci left: 2.063496e-02	ci right 2.322096e-02	k: 1095	n:50000
GDPD4   50000 perm   12 sec   (4201 perm/sec)   p_kst 2.190000e-02   p_cons 1.001800e-01   p_joint 2.320000e-02

Joint ci ratio: 1.164043e-01	ci left: 1.746917e-02	ci right 1.964442e-02	k: 1112	n:60000
Cons ci ratio: 4.798304e-02	ci left: 9.769304e-02	ci right 1.025124e-01	k: 6005	n:60000
KS ci ratio: 1.053613e-01	ci left: 2.136063e-02	ci right 2.375253e-02	k: 1352	n:60000
GDPD4   60000 perm   15 sec   (4108 perm/sec)   p_kst 2.253333e-02   p_cons 1.000833e-01   p_joint 1.853333e-02

Joint ci ratio: 9.625895e-02	ci left: 2.202772e-02	ci right 2.426919e-02	k: 1619	n:70000
Cons ci ratio: 4.294705e-02	ci left: 1.040684e-01	ci right 1.086500e-01	k: 7444	n:70000
KS ci ratio: 9.709044e-02	ci left: 2.165113e-02	ci right 2.387439e-02	k: 1592	n:70000
GDPD4   70000 perm   17 sec   (4025 perm/sec)   p_kst 2.274286e-02   p_cons 1.063429e-01   p_joint 2.312857e-02

Outputting figure to mutsig2_images.part000000000070/GDPD4.4_1623_70000_0.022743_0.10634_0.023129.png
                gene_name: GDPD4
               theta_stop: 0.097 
                    nperm: 70000 
                     p_ks: 0.023 
        ci_ks_bounds_left: 0.022 
       ci_ks_bounds_right: 0.024 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.023 
     ci_joint_bounds_left: 0.022 
    ci_joint_bounds_right: 0.024 

Current progress: 13 percent done.
GEMIN5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.045260e-02	ci left: 4.743609e-01	ci right 4.940483e-01	k: 4842	n:10000
Cons ci ratio: 3.617512e-02	ci left: 5.301711e-01	ci right 5.498056e-01	k: 5400	n:10000
KS ci ratio: 5.142700e-02	ci left: 3.579408e-01	ci right 3.769365e-01	k: 3674	n:10000
GEMIN5   10000 perm   2 sec   (4239 perm/sec)   p_kst 3.674000e-01   p_cons 5.400000e-01   p_joint 4.842000e-01

Outputting figure to mutsig2_images.part000000000070/GEMIN5.4_4639_10000_0.3674_0.54_0.4842.png
                gene_name: GEMIN5
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 15 percent done.
GEN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.526261e-02	ci left: 8.616169e-01	ci right 8.749678e-01	k: 8684	n:10000
Cons ci ratio: 5.572947e-02	ci left: 3.216780e-01	ci right 3.402206e-01	k: 3309	n:10000
KS ci ratio: 1.545556e-02	ci left: 8.586563e-01	ci right 8.721300e-01	k: 8655	n:10000
GEN1   10000 perm   2 sec   (4873 perm/sec)   p_kst 8.655000e-01   p_cons 3.309000e-01   p_joint 8.684000e-01

Outputting figure to mutsig2_images.part000000000070/GEN1.4_2779_10000_0.8655_0.3309_0.8684.png
                gene_name: GEN1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 17 percent done.
GFI1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.395411e-02	ci left: 7.192638e-01	ci right 7.368032e-01	k: 7281	n:10000
Cons ci ratio: 2.296963e-02	ci left: 7.357303e-01	ci right 7.529272e-01	k: 7444	n:10000
KS ci ratio: 6.180047e-02	ci left: 2.779488e-01	ci right 2.957755e-01	k: 2868	n:10000
GFI1B   10000 perm   2 sec   (6360 perm/sec)   p_kst 2.868000e-01   p_cons 7.444000e-01   p_joint 7.281000e-01

Outputting figure to mutsig2_images.part000000000070/GFI1B.4_1017_10000_0.2868_0.7444_0.7281.png
                gene_name: GFI1B
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 19 percent done.
GGNBP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.134190e-01	ci left: 1.006167e-01	ci right 1.128135e-01	k: 1066	n:10000
Cons ci ratio: 6.442281e-02	ci left: 2.614155e-01	ci right 2.789186e-01	k: 2701	n:10000
KS ci ratio: 1.288571e-01	ci left: 7.921726e-02	ci right 9.022608e-02	k: 846	n:10000
GGNBP2   10000 perm   2 sec   (5274 perm/sec)   p_kst 8.460000e-02   p_cons 2.701000e-01   p_joint 1.066000e-01

Joint ci ratio: 7.655473e-02	ci left: 1.114456e-01	ci right 1.203665e-01	k: 2317	n:20000
Cons ci ratio: 4.572218e-02	ci left: 2.625655e-01	ci right 2.749018e-01	k: 5374	n:20000
KS ci ratio: 8.945464e-02	ci left: 8.366805e-02	ci right 9.155233e-02	k: 1751	n:20000
GGNBP2   20000 perm   4 sec   (4698 perm/sec)   p_kst 8.755000e-02   p_cons 2.687000e-01   p_joint 1.158500e-01

Outputting figure to mutsig2_images.part000000000070/GGNBP2.4_2146_20000_0.08755_0.2687_0.11585.png
                gene_name: GGNBP2
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.088 
        ci_ks_bounds_left: 0.084 
       ci_ks_bounds_right: 0.092 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 21 percent done.
GGTLC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.799546e-02	ci left: 6.528339e-01	ci right 6.714715e-01	k: 6622	n:10000
Cons ci ratio: 6.822271e-02	ci left: 2.396590e-01	ci right 2.566879e-01	k: 2481	n:10000
KS ci ratio: 2.351292e-02	ci left: 7.266365e-01	ci right 7.440262e-01	k: 7354	n:10000
GGTLC1   10000 perm   2 sec   (6257 perm/sec)   p_kst 7.354000e-01   p_cons 2.481000e-01   p_joint 6.622000e-01

Outputting figure to mutsig2_images.part000000000070/GGTLC1.4_698_10000_0.7354_0.2481_0.6622.png
                gene_name: GGTLC1
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 23 percent done.
GHRHR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.134047e-02	ci left: 2.235583e-01	ci right 2.401981e-01	k: 2318	n:10000
Cons ci ratio: 1.424392e-01	ci left: 6.536500e-02	ci right 7.548697e-02	k: 703	n:10000
KS ci ratio: 2.812068e-02	ci left: 6.508212e-01	ci right 6.694854e-01	k: 6602	n:10000
GHRHR   10000 perm   2 sec   (5702 perm/sec)   p_kst 6.602000e-01   p_cons 7.030000e-02   p_joint 2.318000e-01

Joint ci ratio: 5.938241e-02	ci left: 1.735608e-01	ci right 1.842327e-01	k: 3577	n:20000
Cons ci ratio: 1.006834e-01	ci left: 6.689222e-02	ci right 7.403327e-02	k: 1408	n:20000
KS ci ratio: 2.007155e-02	ci left: 6.493691e-01	ci right 6.625855e-01	k: 13120	n:20000
GHRHR   20000 perm   4 sec   (4922 perm/sec)   p_kst 6.560000e-01   p_cons 7.040000e-02   p_joint 1.788500e-01

Joint ci ratio: 3.219239e-02	ci left: 3.254094e-01	ci right 3.360900e-01	k: 9922	n:30000
Cons ci ratio: 8.082808e-02	ci left: 6.975402e-02	ci right 7.566239e-02	k: 2180	n:30000
KS ci ratio: 1.634623e-02	ci left: 6.517638e-01	ci right 6.625390e-01	k: 19715	n:30000
GHRHR   30000 perm   6 sec   (4672 perm/sec)   p_kst 6.571667e-01   p_cons 7.266667e-02   p_joint 3.307333e-01

Outputting figure to mutsig2_images.part000000000070/GHRHR.4_1364_30000_0.65717_0.072667_0.33073.png
                gene_name: GHRHR
               theta_stop: 0.081 
                    nperm: 30000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.073 
      ci_cons_bounds_left: 0.070 
     ci_cons_bounds_right: 0.076 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 26 percent done.
GHSR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.511849e-02	ci left: 6.998865e-01	ci right 7.177916e-01	k: 7089	n:10000
KS ci ratio: 2.098851e-02	ci left: 7.689140e-01	ci right 7.853243e-01	k: 7772	n:10000
GHSR   10000 perm   2 sec   (5797 perm/sec)   p_kst 7.772000e-01   p_cons 7.089000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000070/GHSR.4_1183_10000_0.7772_0.7089_1.png
                gene_name: GHSR
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 28 percent done.
GIMAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.746868e-02	ci left: 5.126548e-01	ci right 5.323321e-01	k: 5225	n:10000
Cons ci ratio: 7.956843e-02	ci left: 1.874712e-01	ci right 2.031067e-01	k: 1952	n:10000
KS ci ratio: 1.602799e-02	ci left: 8.497808e-01	ci right 8.636107e-01	k: 8568	n:10000
GIMAP1   10000 perm   2 sec   (6402 perm/sec)   p_kst 8.568000e-01   p_cons 1.952000e-01   p_joint 5.225000e-01

Outputting figure to mutsig2_images.part000000000070/GIMAP1.4_929_10000_0.8568_0.1952_0.5225.png
                gene_name: GIMAP1
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 30 percent done.
GIMAP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.607595e-02	ci left: 4.101016e-01	ci right 4.295451e-01	k: 4198	n:10000
KS ci ratio: 9.178519e-03	ci left: 9.435701e-01	ci right 9.523667e-01	k: 9481	n:10000
GIMAP6   10000 perm   2 sec   (6099 perm/sec)   p_kst 9.481000e-01   p_cons 4.198000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000070/GIMAP6.4_887_10000_0.9481_0.4198_1.png
                gene_name: GIMAP6
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 32 percent done.
GIN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.484613e-02	ci left: 8.679499e-01	ci right 8.810311e-01	k: 8746	n:10000
Cons ci ratio: 9.499931e-03	ci left: 9.399353e-01	ci right 9.490036e-01	k: 9446	n:10000
KS ci ratio: 2.724192e-02	ci left: 6.650151e-01	ci right 6.834832e-01	k: 6743	n:10000
GIN1   10000 perm   2 sec   (5474 perm/sec)   p_kst 6.743000e-01   p_cons 9.446000e-01   p_joint 8.746000e-01

Outputting figure to mutsig2_images.part000000000070/GIN1.4_1597_10000_0.6743_0.9446_0.8746.png
                gene_name: GIN1
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 34 percent done.
GJA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.247489e-02	ci left: 7.440199e-01	ci right 7.610327e-01	k: 7526	n:10000
Cons ci ratio: 4.553173e-02	ci left: 4.158821e-01	ci right 4.353612e-01	k: 4256	n:10000
KS ci ratio: 1.481229e-02	ci left: 8.684609e-01	ci right 8.815198e-01	k: 8751	n:10000
GJA1   10000 perm   2 sec   (5651 perm/sec)   p_kst 8.751000e-01   p_cons 4.256000e-01   p_joint 7.526000e-01

Outputting figure to mutsig2_images.part000000000070/GJA1.4_1153_10000_0.8751_0.4256_0.7526.png
                gene_name: GJA1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 36 percent done.
GJA8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.029581e-01	ci left: 1.200443e-01	ci right 1.331741e-01	k: 1265	n:10000
Cons ci ratio: 4.506925e-02	ci left: 4.208664e-01	ci right 4.403740e-01	k: 4306	n:10000
KS ci ratio: 1.618587e-01	ci left: 5.090025e-02	ci right 5.996092e-02	k: 553	n:10000
GJA8   10000 perm   2 sec   (5624 perm/sec)   p_kst 5.530000e-02   p_cons 4.306000e-01   p_joint 1.265000e-01

Joint ci ratio: 1.072598e-01	ci left: 5.923278e-02	ci right 6.599506e-02	k: 1251	n:20000
Cons ci ratio: 3.172259e-02	ci left: 4.260183e-01	ci right 4.398012e-01	k: 8658	n:20000
KS ci ratio: 1.132683e-01	ci left: 5.329115e-02	ci right 5.973854e-02	k: 1129	n:20000
GJA8   20000 perm   4 sec   (4676 perm/sec)   p_kst 5.645000e-02   p_cons 4.329000e-01   p_joint 6.255000e-02

Joint ci ratio: 8.557791e-02	ci left: 6.256256e-02	ci right 6.818863e-02	k: 1960	n:30000
Cons ci ratio: 2.576196e-02	ci left: 4.299457e-01	ci right 4.412001e-01	k: 13067	n:30000
KS ci ratio: 9.199587e-02	ci left: 5.443544e-02	ci right 5.971741e-02	k: 1711	n:30000
GJA8   30000 perm   7 sec   (4522 perm/sec)   p_kst 5.703333e-02   p_cons 4.355667e-01   p_joint 6.533333e-02

Outputting figure to mutsig2_images.part000000000070/GJA8.4_1306_30000_0.057033_0.43557_0.065333.png
                gene_name: GJA8
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.057 
        ci_ks_bounds_left: 0.054 
       ci_ks_bounds_right: 0.060 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.065 
     ci_joint_bounds_left: 0.063 
    ci_joint_bounds_right: 0.068 

Current progress: 38 percent done.
GJA9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.607094e-02	ci left: 3.189980e-01	ci right 3.375022e-01	k: 3282	n:10000
Cons ci ratio: 8.360851e-02	ci left: 1.726124e-01	ci right 1.877744e-01	k: 1801	n:10000
KS ci ratio: 4.279990e-02	ci left: 4.463020e-01	ci right 4.659236e-01	k: 4561	n:10000
GJA9   10000 perm   2 sec   (5835 perm/sec)   p_kst 4.561000e-01   p_cons 1.801000e-01   p_joint 3.282000e-01

Outputting figure to mutsig2_images.part000000000070/GJA9.4_1552_10000_0.4561_0.1801_0.3282.png
                gene_name: GJA9
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 40 percent done.
GEFT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.757356e-02	ci left: 3.946604e-01	ci right 4.139954e-01	k: 4043	n:10000
KS ci ratio: 1.343746e-02	ci left: 8.887237e-01	ci right 9.008452e-01	k: 8949	n:10000
GEFT   10000 perm   2 sec   (5584 perm/sec)   p_kst 8.949000e-01   p_cons 4.043000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000070/GEFT.3_2025_10000_0.8949_0.4043_1.png
                gene_name: GEFT
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 43 percent done.
GET4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.009799e-02	ci left: 4.787572e-01	ci right 4.984494e-01	k: 4886	n:10000
KS ci ratio: 2.937825e-02	ci left: 6.308041e-01	ci right 6.497141e-01	k: 6403	n:10000
GET4   10000 perm   2 sec   (6034 perm/sec)   p_kst 6.403000e-01   p_cons 4.886000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000070/GET4.3_1020_10000_0.6403_0.4886_1.png
                gene_name: GET4
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 45 percent done.
GFI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.058238e-02	ci left: 4.727624e-01	ci right 4.924478e-01	k: 4826	n:10000
Cons ci ratio: 7.999633e-03	ci left: 9.560775e-01	ci right 9.638516e-01	k: 9601	n:10000
KS ci ratio: 5.287355e-02	ci left: 3.452172e-01	ci right 3.640676e-01	k: 3546	n:10000
GFI1   10000 perm   2 sec   (6062 perm/sec)   p_kst 3.546000e-01   p_cons 9.601000e-01   p_joint 4.826000e-01

Outputting figure to mutsig2_images.part000000000070/GFI1.3_1293_10000_0.3546_0.9601_0.4826.png
                gene_name: GFI1
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 47 percent done.
GFM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.997367e-03	ci left: 9.341299e-01	ci right 9.436124e-01	k: 9390	n:10000
KS ci ratio: 1.613879e-02	ci left: 8.480476e-01	ci right 8.619449e-01	k: 8551	n:10000
GFM1   10000 perm   2 sec   (5458 perm/sec)   p_kst 8.551000e-01   p_cons 9.390000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000070/GFM1.3_2328_10000_0.8551_0.939_1.png
                gene_name: GFM1
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 49 percent done.
GFOD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.051047e-02	ci left: 3.662946e-01	ci right 3.853777e-01	k: 3758	n:10000
KS ci ratio: 8.266728e-03	ci left: 9.533608e-01	ci right 9.613700e-01	k: 9575	n:10000
GFOD1   10000 perm   2 sec   (6343 perm/sec)   p_kst 9.575000e-01   p_cons 3.758000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000070/GFOD1.3_1181_10000_0.9575_0.3758_1.png
                gene_name: GFOD1
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 51 percent done.
GFOD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.584355e-02	ci left: 1.363893e-01	ci right 1.502192e-01	k: 1432	n:10000
Cons ci ratio: 2.204644e-02	ci left: 7.512008e-01	ci right 7.680477e-01	k: 7597	n:10000
KS ci ratio: 1.440974e-01	ci left: 6.391519e-02	ci right 7.393770e-02	k: 688	n:10000
GFOD2   10000 perm   2 sec   (6404 perm/sec)   p_kst 6.880000e-02   p_cons 7.597000e-01   p_joint 1.432000e-01

Joint ci ratio: 7.820511e-02	ci left: 1.072187e-01	ci right 1.159946e-01	k: 2231	n:20000
Cons ci ratio: 1.557004e-02	ci left: 7.541697e-01	ci right 7.660545e-01	k: 15203	n:20000
KS ci ratio: 1.013035e-01	ci left: 6.611102e-02	ci right 7.321471e-02	k: 1392	n:20000
GFOD2   20000 perm   4 sec   (5438 perm/sec)   p_kst 6.960000e-02   p_cons 7.601500e-01   p_joint 1.115500e-01

Joint ci ratio: 4.574568e-02	ci left: 1.921156e-01	ci right 2.011432e-01	k: 5898	n:30000
Cons ci ratio: 1.297601e-02	ci left: 7.476762e-01	ci right 7.574748e-01	k: 22578	n:30000
KS ci ratio: 8.347931e-02	ci left: 6.560144e-02	ci right 7.134914e-02	k: 2053	n:30000
GFOD2   30000 perm   6 sec   (5071 perm/sec)   p_kst 6.843333e-02   p_cons 7.526000e-01   p_joint 1.966000e-01

Outputting figure to mutsig2_images.part000000000070/GFOD2.3_1166_30000_0.068433_0.7526_0.1966.png
                gene_name: GFOD2
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.068 
        ci_ks_bounds_left: 0.066 
       ci_ks_bounds_right: 0.071 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 53 percent done.
GFPT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.901550e-02	ci left: 3.804235e-01	ci right 3.996406e-01	k: 3900	n:10000
Cons ci ratio: 5.716943e-02	ci left: 3.105631e-01	ci right 3.289420e-01	k: 3197	n:10000
KS ci ratio: 5.365642e-02	ci left: 3.385600e-01	ci right 3.573286e-01	k: 3479	n:10000
GFPT2   10000 perm   2 sec   (5698 perm/sec)   p_kst 3.479000e-01   p_cons 3.197000e-01   p_joint 3.900000e-01

Outputting figure to mutsig2_images.part000000000070/GFPT2.3_2125_10000_0.3479_0.3197_0.39.png
                gene_name: GFPT2
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 55 percent done.
GGT7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.111420e-02	ci left: 4.662695e-01	ci right 4.859444e-01	k: 4761	n:10000
Cons ci ratio: 5.076116e-03	ci left: 9.809150e-01	ci right 9.859977e-01	k: 9836	n:10000
KS ci ratio: 1.073223e-01	ci left: 1.113483e-01	ci right 1.240753e-01	k: 1176	n:10000
GGT7   10000 perm   2 sec   (5204 perm/sec)   p_kst 1.176000e-01   p_cons 9.836000e-01   p_joint 4.761000e-01

Joint ci ratio: 4.345010e-02	ci left: 2.829224e-01	ci right 2.955389e-01	k: 5784	n:20000
Cons ci ratio: 3.633799e-03	ci left: 9.812693e-01	ci right 9.848883e-01	k: 19663	n:20000
KS ci ratio: 7.543644e-02	ci left: 1.144449e-01	ci right 1.234662e-01	k: 2378	n:20000
GGT7   20000 perm   4 sec   (4549 perm/sec)   p_kst 1.189000e-01   p_cons 9.831500e-01   p_joint 2.892000e-01

Outputting figure to mutsig2_images.part000000000070/GGT7.3_2049_20000_0.1189_0.98315_0.2892.png
                gene_name: GGT7
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 57 percent done.
GHR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.390347e-03	ci left: 9.709012e-01	ci right 9.772186e-01	k: 9742	n:10000
KS ci ratio: 9.271244e-03	ci left: 9.425310e-01	ci right 9.514063e-01	k: 9471	n:10000
GHR   10000 perm   2 sec   (5459 perm/sec)   p_kst 9.471000e-01   p_cons 9.742000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000070/GHR.3_1953_10000_0.9471_0.9742_1.png
                gene_name: GHR
               theta_stop: 0.0093 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 60 percent done.
GIGYF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.602013e-02	ci left: 3.193950e-01	ci right 3.379049e-01	k: 3286	n:10000
Cons ci ratio: 4.033134e-02	ci left: 4.758596e-01	ci right 4.955488e-01	k: 4857	n:10000
KS ci ratio: 8.889150e-02	ci left: 1.555149e-01	ci right 1.700821e-01	k: 1627	n:10000
GIGYF2   10000 perm   2 sec   (4176 perm/sec)   p_kst 1.627000e-01   p_cons 4.857000e-01   p_joint 3.286000e-01

Outputting figure to mutsig2_images.part000000000070/GIGYF2.3_4078_10000_0.1627_0.4857_0.3286.png
                gene_name: GIGYF2
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 62 percent done.
GIMAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.344875e-01	ci left: 7.301117e-02	ci right 8.363602e-02	k: 782	n:10000
Cons ci ratio: 3.880608e-01	ci left: 8.143597e-03	ci right 1.214950e-02	k: 100	n:10000
KS ci ratio: 5.526754e-03	ci left: 9.777025e-01	ci right 9.832126e-01	k: 9806	n:10000
GIMAP2   10000 perm   2 sec   (6295 perm/sec)   p_kst 9.806000e-01   p_cons 1.000000e-02   p_joint 7.820000e-02

Joint ci ratio: 1.121161e-01	ci left: 5.436186e-02	ci right 6.086750e-02	k: 1151	n:20000
Cons ci ratio: 2.757897e-01	ci left: 8.621064e-03	ci right 1.142415e-02	k: 199	n:20000
KS ci ratio: 3.939051e-03	ci left: 9.782253e-01	ci right 9.821333e-01	k: 19605	n:20000
GIMAP2   20000 perm   4 sec   (5319 perm/sec)   p_kst 9.802500e-01   p_cons 9.950000e-03   p_joint 5.755000e-02

Joint ci ratio: 1.217500e-01	ci left: 3.136305e-02	ci right 3.546129e-02	k: 1001	n:30000
Cons ci ratio: 2.290713e-01	ci left: 8.559072e-03	ci right 1.080409e-02	k: 289	n:30000
KS ci ratio: 3.202519e-03	ci left: 9.787674e-01	ci right 9.819386e-01	k: 29412	n:30000
GIMAP2   30000 perm   6 sec   (5001 perm/sec)   p_kst 9.804000e-01   p_cons 9.633333e-03   p_joint 3.336667e-02

Joint ci ratio: 1.016066e-01	ci left: 3.404932e-02	ci right 3.771846e-02	k: 1434	n:40000
Cons ci ratio: 1.957580e-01	ci left: 8.952977e-03	ci right 1.091915e-02	k: 396	n:40000
KS ci ratio: 2.751224e-03	ci left: 9.793038e-01	ci right 9.820258e-01	k: 39228	n:40000
GIMAP2   40000 perm   8 sec   (4816 perm/sec)   p_kst 9.807000e-01   p_cons 9.900000e-03   p_joint 3.585000e-02

Joint ci ratio: 1.083286e-01	ci left: 2.413587e-02	ci right 2.691959e-02	k: 1275	n:50000
Cons ci ratio: 1.754940e-01	ci left: 9.012485e-03	ci right 1.076512e-02	k: 493	n:50000
KS ci ratio: 2.459177e-03	ci left: 9.794764e-01	ci right 9.819073e-01	k: 49036	n:50000
GIMAP2   50000 perm   11 sec   (4666 perm/sec)   p_kst 9.807200e-01   p_cons 9.860000e-03   p_joint 2.550000e-02

Joint ci ratio: 9.125976e-02	ci left: 2.847020e-02	ci right 3.120886e-02	k: 1789	n:60000
Cons ci ratio: 1.721602e-01	ci left: 7.828814e-03	ci right 9.319305e-03	k: 513	n:60000
KS ci ratio: 2.266578e-03	ci left: 9.792076e-01	ci right 9.814456e-01	k: 58821	n:60000
GIMAP2   60000 perm   13 sec   (4544 perm/sec)   p_kst 9.803500e-01   p_cons 8.550000e-03   p_joint 2.981667e-02

Joint ci ratio: 8.527914e-02	ci left: 2.804908e-02	ci right 3.056156e-02	k: 2050	n:70000
Cons ci ratio: 1.613923e-01	ci left: 7.682347e-03	ci right 9.044593e-03	k: 584	n:70000
KS ci ratio: 2.096382e-03	ci left: 9.793312e-01	ci right 9.814002e-01	k: 68627	n:70000
GIMAP2   70000 perm   16 sec   (4433 perm/sec)   p_kst 9.803857e-01   p_cons 8.342857e-03   p_joint 2.928571e-02

Joint ci ratio: 8.030234e-02	ci left: 2.776224e-02	ci right 3.009709e-02	k: 2313	n:80000
Cons ci ratio: 1.500181e-01	ci left: 7.827335e-03	ci right 9.108695e-03	k: 676	n:80000
KS ci ratio: 1.970346e-03	ci left: 9.792108e-01	ci right 9.811542e-01	k: 78416	n:80000
GIMAP2   80000 perm   18 sec   (4337 perm/sec)   p_kst 9.802000e-01   p_cons 8.450000e-03   p_joint 2.891250e-02

Joint ci ratio: 7.180193e-02	ci left: 3.090337e-02	ci right 3.321581e-02	k: 2884	n:90000
Cons ci ratio: 1.414971e-01	ci left: 7.856954e-03	ci right 9.063938e-03	k: 760	n:90000
KS ci ratio: 1.854941e-03	ci left: 9.793255e-01	ci right 9.811545e-01	k: 88223	n:90000
GIMAP2   90000 perm   21 sec   (4241 perm/sec)   p_kst 9.802556e-01   p_cons 8.444444e-03   p_joint 3.204444e-02

Joint ci ratio: 6.701879e-02	ci left: 3.197025e-02	ci right 3.419694e-02	k: 3307	n:100000
Cons ci ratio: 1.349261e-01	ci left: 7.804972e-03	ci right 8.943819e-03	k: 836	n:100000
KS ci ratio: 1.759958e-03	ci left: 9.793686e-01	ci right 9.811034e-01	k: 98025	n:100000
GIMAP2   100000 perm   24 sec   (4164 perm/sec)   p_kst 9.802500e-01   p_cons 8.360000e-03   p_joint 3.307000e-02

Joint ci ratio: 6.337762e-02	ci left: 3.254289e-02	ci right 3.468179e-02	k: 3696	n:110000
Cons ci ratio: 1.276511e-01	ci left: 7.957131e-03	ci right 9.050838e-03	k: 934	n:110000
KS ci ratio: 1.678216e-03	ci left: 9.794058e-01	ci right 9.810597e-01	k: 107827	n:110000
GIMAP2   110000 perm   27 sec   (4092 perm/sec)   p_kst 9.802455e-01   p_cons 8.490909e-03   p_joint 3.360000e-02

Joint ci ratio: 6.344286e-02	ci left: 2.985425e-02	ci right 3.181851e-02	k: 3699	n:120000
Cons ci ratio: 1.225808e-01	ci left: 7.931763e-03	ci right 8.975534e-03	k: 1013	n:120000
KS ci ratio: 1.607244e-03	ci left: 9.794299e-01	ci right 9.810134e-01	k: 117628	n:120000
GIMAP2   120000 perm   30 sec   (3994 perm/sec)   p_kst 9.802333e-01   p_cons 8.441667e-03   p_joint 3.082500e-02

Joint ci ratio: 5.039252e-02	ci left: 4.335501e-02	ci right 4.560382e-02	k: 5781	n:130000
Cons ci ratio: 1.175294e-01	ci left: 7.985701e-03	ci right 8.990255e-03	k: 1102	n:130000
KS ci ratio: 1.545188e-03	ci left: 9.794359e-01	ci right 9.809580e-01	k: 127427	n:130000
GIMAP2   130000 perm   33 sec   (3897 perm/sec)   p_kst 9.802077e-01   p_cons 8.476923e-03   p_joint 4.446923e-02

Joint ci ratio: 4.905946e-02	ci left: 4.254329e-02	ci right 4.468995e-02	k: 6105	n:140000
Cons ci ratio: 1.129117e-01	ci left: 8.053516e-03	ci right 9.024146e-03	k: 1194	n:140000
KS ci ratio: 1.487612e-03	ci left: 9.795003e-01	ci right 9.809654e-01	k: 137234	n:140000
GIMAP2   140000 perm   37 sec   (3820 perm/sec)   p_kst 9.802429e-01   p_cons 8.528571e-03   p_joint 4.360714e-02

Joint ci ratio: 5.474352e-02	ci left: 3.214774e-02	ci right 3.396370e-02	k: 4957	n:150000
Cons ci ratio: 1.098365e-01	ci left: 7.957298e-03	ci right 8.888520e-03	k: 1262	n:150000
KS ci ratio: 1.433050e-03	ci left: 9.796383e-01	ci right 9.810497e-01	k: 147053	n:150000
GIMAP2   150000 perm   40 sec   (3752 perm/sec)   p_kst 9.803533e-01   p_cons 8.413333e-03   p_joint 3.304667e-02

Joint ci ratio: 5.132536e-02	ci left: 3.427146e-02	ci right 3.608293e-02	k: 5627	n:160000
Cons ci ratio: 1.063966e-01	ci left: 7.964692e-03	ci right 8.865758e-03	k: 1345	n:160000
KS ci ratio: 1.389675e-03	ci left: 9.796008e-01	ci right 9.809692e-01	k: 156847	n:160000
GIMAP2   160000 perm   43 sec   (3688 perm/sec)   p_kst 9.802937e-01   p_cons 8.406250e-03   p_joint 3.516875e-02

Joint ci ratio: 5.232533e-02	ci left: 3.112195e-02	ci right 3.279995e-02	k: 5432	n:170000
Cons ci ratio: 1.032973e-01	ci left: 7.965885e-03	ci right 8.839240e-03	k: 1427	n:170000
KS ci ratio: 1.345900e-03	ci left: 9.796880e-01	ci right 9.810132e-01	k: 166661	n:170000
GIMAP2   170000 perm   47 sec   (3634 perm/sec)   p_kst 9.803588e-01   p_cons 8.394118e-03   p_joint 3.195294e-02

Joint ci ratio: 5.133515e-02	ci left: 3.057169e-02	ci right 3.218789e-02	k: 5647	n:180000
Cons ci ratio: 1.006896e-01	ci left: 7.929366e-03	ci right 8.775472e-03	k: 1502	n:180000
KS ci ratio: 1.302032e-03	ci left: 9.798845e-01	ci right 9.811666e-01	k: 176496	n:180000
GIMAP2   180000 perm   50 sec   (3586 perm/sec)   p_kst 9.805333e-01   p_cons 8.344444e-03   p_joint 3.137222e-02

Joint ci ratio: 4.949977e-02	ci left: 3.116114e-02	ci right 3.274792e-02	k: 6070	n:190000
Cons ci ratio: 9.777129e-02	ci left: 7.979102e-03	ci right 8.804423e-03	k: 1593	n:190000
KS ci ratio: 1.270669e-03	ci left: 9.797988e-01	ci right 9.810497e-01	k: 186282	n:190000
GIMAP2   190000 perm   54 sec   (3531 perm/sec)   p_kst 9.804316e-01   p_cons 8.384211e-03   p_joint 3.194737e-02

Outputting figure to mutsig2_images.part000000000070/GIMAP2.3_1022_190000_0.98043_0.0083842_0.031947.png
                gene_name: GIMAP2
               theta_stop: 0.098 
                    nperm: 190000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.0084 
      ci_cons_bounds_left: 0.0080 
     ci_cons_bounds_right: 0.0088 
                  p_joint: 0.032 
     ci_joint_bounds_left: 0.031 
    ci_joint_bounds_right: 0.033 

Current progress: 64 percent done.
GIMAP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.551311e-02	ci left: 4.160815e-01	ci right 4.355618e-01	k: 4258	n:10000
Cons ci ratio: 3.589212e-02	ci left: 5.340764e-01	ci right 5.536980e-01	k: 5439	n:10000
KS ci ratio: 6.090642e-02	ci left: 2.838926e-01	ci right 3.018282e-01	k: 2928	n:10000
GIMAP5   10000 perm   2 sec   (6160 perm/sec)   p_kst 2.928000e-01   p_cons 5.439000e-01   p_joint 4.258000e-01

Outputting figure to mutsig2_images.part000000000070/GIMAP5.3_932_10000_0.2928_0.5439_0.4258.png
                gene_name: GIMAP5
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 66 percent done.
GIMAP7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.241456e-02	ci left: 7.450311e-01	ci right 7.620210e-01	k: 7536	n:10000
KS ci ratio: 2.623654e-02	ci left: 6.814356e-01	ci right 6.996533e-01	k: 6906	n:10000
GIMAP7   10000 perm   2 sec   (5977 perm/sec)   p_kst 6.906000e-01   p_cons 7.536000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000070/GIMAP7.3_907_10000_0.6906_0.7536_1.png
                gene_name: GIMAP7
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
GJB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.218348e-02	ci left: 5.876103e-01	ci right 6.069330e-01	k: 5973	n:10000
KS ci ratio: 3.031594e-02	ci left: 6.161294e-01	ci right 6.351973e-01	k: 6257	n:10000
GJB4   10000 perm   2 sec   (6367 perm/sec)   p_kst 6.257000e-01   p_cons 5.973000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000070/GJB4.3_805_10000_0.6257_0.5973_1.png
                gene_name: GJB4
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
GDI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.450511e-02	ci left: 7.100773e-01	ci right 7.277950e-01	k: 7190	n:10000
Cons ci ratio: 7.104141e-02	ci left: 2.250393e-01	ci right 2.417163e-01	k: 2333	n:10000
KS ci ratio: 2.672253e-02	ci left: 6.734756e-01	ci right 6.918179e-01	k: 6827	n:10000
GDI1   10000 perm   2 sec   (6271 perm/sec)   p_kst 6.827000e-01   p_cons 2.333000e-01   p_joint 7.190000e-01

Outputting figure to mutsig2_images.part000000000070/GDI1.2_1388_10000_0.6827_0.2333_0.719.png
                gene_name: GDI1
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 72 percent done.
GDI2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.502334e-02	ci left: 4.213649e-01	ci right 4.408752e-01	k: 4311	n:10000
Cons ci ratio: 4.283441e-02	ci left: 4.459028e-01	ci right 4.655230e-01	k: 4557	n:10000
KS ci ratio: 5.913147e-02	ci left: 2.961823e-01	ci right 3.143313e-01	k: 3052	n:10000
GDI2   10000 perm   2 sec   (6551 perm/sec)   p_kst 3.052000e-01   p_cons 4.557000e-01   p_joint 4.311000e-01

Outputting figure to mutsig2_images.part000000000070/GDI2.2_1382_10000_0.3052_0.4557_0.4311.png
                gene_name: GDI2
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 74 percent done.
GDPD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.126523e-01	ci left: 1.018840e-01	ci right 1.141454e-01	k: 1079	n:10000
Cons ci ratio: 2.145532e-01	ci left: 2.882687e-02	ci right 3.584904e-02	k: 322	n:10000
KS ci ratio: 2.981969e-02	ci left: 6.238676e-01	ci right 6.428546e-01	k: 6334	n:10000
GDPD3   10000 perm   2 sec   (6556 perm/sec)   p_kst 6.334000e-01   p_cons 3.220000e-02   p_joint 1.079000e-01

Joint ci ratio: 8.765693e-02	ci left: 8.690165e-02	ci right 9.491774e-02	k: 1817	n:20000
Cons ci ratio: 1.492271e-01	ci left: 3.085647e-02	ci right 3.588039e-02	k: 666	n:20000
KS ci ratio: 2.092805e-02	ci left: 6.301908e-01	ci right 6.435694e-01	k: 12738	n:20000
GDPD3   20000 perm   4 sec   (5650 perm/sec)   p_kst 6.369000e-01   p_cons 3.330000e-02   p_joint 9.085000e-02

Joint ci ratio: 7.098660e-02	ci left: 8.898196e-02	ci right 9.556391e-02	k: 2767	n:30000
Cons ci ratio: 1.218129e-01	ci left: 3.133070e-02	ci right 3.542698e-02	k: 1000	n:30000
KS ci ratio: 1.719400e-02	ci left: 6.285530e-01	ci right 6.394877e-01	k: 19021	n:30000
GDPD3   30000 perm   6 sec   (5334 perm/sec)   p_kst 6.340333e-01   p_cons 3.333333e-02   p_joint 9.223333e-02

Joint ci ratio: 5.796572e-02	ci left: 9.961813e-02	ci right 1.055897e-01	k: 4103	n:40000
Cons ci ratio: 1.048317e-01	ci left: 3.200171e-02	ci right 3.556639e-02	k: 1350	n:40000
KS ci ratio: 1.490366e-02	ci left: 6.288812e-01	ci right 6.383493e-01	k: 25345	n:40000
GDPD3   40000 perm   8 sec   (5122 perm/sec)   p_kst 6.336250e-01   p_cons 3.375000e-02   p_joint 1.025750e-01

Joint ci ratio: 3.671733e-02	ci left: 1.822204e-01	ci right 1.890561e-01	k: 9281	n:50000
Cons ci ratio: 9.369993e-02	ci left: 3.223311e-02	ci right 3.542131e-02	k: 1690	n:50000
KS ci ratio: 1.332068e-02	ci left: 6.297199e-01	ci right 6.381845e-01	k: 31698	n:50000
GDPD3   50000 perm   10 sec   (4969 perm/sec)   p_kst 6.339600e-01   p_cons 3.380000e-02   p_joint 1.856200e-01

Outputting figure to mutsig2_images.part000000000070/GDPD3.2_997_50000_0.63396_0.0338_0.18562.png
                gene_name: GDPD3
               theta_stop: 0.094 
                    nperm: 50000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.034 
      ci_cons_bounds_left: 0.032 
     ci_cons_bounds_right: 0.035 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 77 percent done.
GDPD5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.380421e-01	ci left: 2.325212e-02	ci right 2.962780e-02	k: 263	n:10000
Cons ci ratio: 1.829303e-01	ci left: 3.987233e-02	ci right 4.799604e-02	k: 438	n:10000
KS ci ratio: 1.694391e-01	ci left: 4.648153e-02	ci right 5.518251e-02	k: 507	n:10000
GDPD5   10000 perm   2 sec   (6417 perm/sec)   p_kst 5.070000e-02   p_cons 4.380000e-02   p_joint 2.630000e-02

Joint ci ratio: 1.479695e-01	ci left: 3.138665e-02	ci right 3.645004e-02	k: 677	n:20000
Cons ci ratio: 1.161846e-01	ci left: 5.071313e-02	ci right 5.701737e-02	k: 1076	n:20000
KS ci ratio: 1.187105e-01	ci left: 4.862308e-02	ci right 5.480807e-02	k: 1033	n:20000
GDPD5   20000 perm   4 sec   (5455 perm/sec)   p_kst 5.165000e-02   p_cons 5.380000e-02   p_joint 3.385000e-02

Joint ci ratio: 1.063807e-01	ci left: 4.099204e-02	ci right 4.563026e-02	k: 1298	n:30000
Cons ci ratio: 9.466392e-02	ci left: 5.150162e-02	ci right 5.665183e-02	k: 1621	n:30000
KS ci ratio: 9.630694e-02	ci left: 4.980752e-02	ci right 5.487962e-02	k: 1569	n:30000
GDPD5   30000 perm   6 sec   (5080 perm/sec)   p_kst 5.230000e-02   p_cons 5.403333e-02   p_joint 4.326667e-02

Joint ci ratio: 9.266124e-02	ci left: 4.083721e-02	ci right 4.482950e-02	k: 1712	n:40000
Cons ci ratio: 8.197499e-02	ci left: 5.185404e-02	ci right 5.631098e-02	k: 2162	n:40000
KS ci ratio: 8.370741e-02	ci left: 4.979525e-02	ci right 5.417008e-02	k: 2078	n:40000
GDPD5   40000 perm   8 sec   (4889 perm/sec)   p_kst 5.195000e-02   p_cons 5.405000e-02   p_joint 4.280000e-02

Outputting figure to mutsig2_images.part000000000070/GDPD5.2_1878_40000_0.05195_0.05405_0.0428.png
                gene_name: GDPD5
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.052 
        ci_ks_bounds_left: 0.050 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.054 
      ci_cons_bounds_left: 0.052 
     ci_cons_bounds_right: 0.056 
                  p_joint: 0.043 
     ci_joint_bounds_left: 0.041 
    ci_joint_bounds_right: 0.045 

Current progress: 79 percent done.
GEMIN8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.380295e-02	ci left: 7.217883e-01	ci right 7.392772e-01	k: 7306	n:10000
Cons ci ratio: 4.603814e-02	ci left: 4.105002e-01	ci right 4.299463e-01	k: 4202	n:10000
KS ci ratio: 2.357936e-02	ci left: 7.255253e-01	ci right 7.429380e-01	k: 7343	n:10000
GEMIN8   10000 perm   2 sec   (6444 perm/sec)   p_kst 7.343000e-01   p_cons 4.202000e-01   p_joint 7.306000e-01

Outputting figure to mutsig2_images.part000000000070/GEMIN8.2_741_10000_0.7343_0.4202_0.7306.png
                gene_name: GEMIN8
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 81 percent done.
GGCT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.680273e-02	ci left: 6.721660e-01	ci right 6.905282e-01	k: 6814	n:10000
Cons ci ratio: 7.487955e-02	ci left: 2.069819e-01	ci right 2.231844e-01	k: 2150	n:10000
KS ci ratio: 3.674677e-02	ci left: 5.223623e-01	ci right 5.420189e-01	k: 5322	n:10000
GGCT   10000 perm   1 sec   (6967 perm/sec)   p_kst 5.322000e-01   p_cons 2.150000e-01   p_joint 6.814000e-01

Outputting figure to mutsig2_images.part000000000070/GGCT.2_583_10000_0.5322_0.215_0.6814.png
                gene_name: GGCT
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 83 percent done.
GGH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.725901e-02	ci left: 5.154566e-01	ci right 5.351287e-01	k: 5253	n:10000
Cons ci ratio: 3.613146e-02	ci left: 5.307719e-01	ci right 5.504044e-01	k: 5406	n:10000
KS ci ratio: 1.682216e-01	ci left: 4.715334e-02	ci right 5.591026e-02	k: 514	n:10000
GGH   10000 perm   1 sec   (6694 perm/sec)   p_kst 5.140000e-02   p_cons 5.406000e-01   p_joint 5.253000e-01

Joint ci ratio: 2.346530e-02	ci left: 5.756289e-01	ci right 5.893471e-01	k: 11650	n:20000
Cons ci ratio: 2.552994e-02	ci left: 5.340633e-01	ci right 5.479248e-01	k: 10820	n:20000
KS ci ratio: 1.183488e-01	ci left: 4.891463e-02	ci right 5.511643e-02	k: 1039	n:20000
GGH   20000 perm   4 sec   (5687 perm/sec)   p_kst 5.195000e-02   p_cons 5.410000e-01   p_joint 5.825000e-01

Joint ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
Cons ci ratio: 2.082040e-02	ci left: 5.359412e-01	ci right 5.472507e-01	k: 16248	n:30000
KS ci ratio: 9.569744e-02	ci left: 5.042643e-02	ci right 5.552724e-02	k: 1588	n:30000
GGH   30000 perm   6 sec   (5338 perm/sec)   p_kst 5.293333e-02   p_cons 5.416000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000070/GGH.2_993_30000_0.052933_0.5416_1.png
                gene_name: GGH
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.053 
        ci_ks_bounds_left: 0.050 
       ci_ks_bounds_right: 0.056 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 85 percent done.
GGPS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.241456e-02	ci left: 7.450311e-01	ci right 7.620210e-01	k: 7536	n:10000
KS ci ratio: 9.653018e-03	ci left: 9.381717e-01	ci right 9.473683e-01	k: 9429	n:10000
GGPS1   10000 perm   2 sec   (6607 perm/sec)   p_kst 9.429000e-01   p_cons 7.536000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000070/GGPS1.2_915_10000_0.9429_0.7536_1.png
                gene_name: GGPS1
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
GGT5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.269208e-02	ci left: 7.403801e-01	ci right 7.574747e-01	k: 7490	n:10000
Cons ci ratio: 2.679656e-02	ci left: 6.722668e-01	ci right 6.906274e-01	k: 6815	n:10000
KS ci ratio: 3.965135e-02	ci left: 4.843537e-01	ci right 5.040497e-01	k: 4942	n:10000
GGT5   10000 perm   2 sec   (6290 perm/sec)   p_kst 4.942000e-01   p_cons 6.815000e-01   p_joint 7.490000e-01

Outputting figure to mutsig2_images.part000000000070/GGT5.2_1812_10000_0.4942_0.6815_0.749.png
                gene_name: GGT5
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 89 percent done.
GH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.302694e-02	ci left: 8.945686e-01	ci right 9.063969e-01	k: 9006	n:10000
Cons ci ratio: 1.493392e-02	ci left: 8.666216e-01	ci right 8.797602e-01	k: 8733	n:10000
KS ci ratio: 3.225711e-02	ci left: 5.865064e-01	ci right 6.058375e-01	k: 5962	n:10000
GH1   10000 perm   1 sec   (6826 perm/sec)   p_kst 5.962000e-01   p_cons 8.733000e-01   p_joint 9.006000e-01

Outputting figure to mutsig2_images.part000000000070/GH1.2_674_10000_0.5962_0.8733_0.9006.png
                gene_name: GH1
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.91 

Current progress: 91 percent done.
GHITM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.049610e-01	ci left: 1.159392e-01	ci right 1.288817e-01	k: 1223	n:10000
KS ci ratio: 3.334700e-02	ci left: 5.703546e-01	ci right 5.897987e-01	k: 5801	n:10000
GHITM   10000 perm   2 sec   (6523 perm/sec)   p_kst 5.801000e-01   p_cons 1.223000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 7.458496e-02	ci left: 1.168056e-01	ci right 1.259048e-01	k: 2426	n:20000
KS ci ratio: 2.347013e-02	ci left: 5.755287e-01	ci right 5.892474e-01	k: 11648	n:20000
GHITM   20000 perm   4 sec   (5511 perm/sec)   p_kst 5.824000e-01   p_cons 1.213000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000070/GHITM.2_1070_20000_0.5824_0.1213_1.png
                gene_name: GHITM
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
GIF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.359145e-02	ci left: 7.253233e-01	ci right 7.427402e-01	k: 7341	n:10000
Cons ci ratio: 2.708704e-02	ci left: 6.675328e-01	ci right 6.859641e-01	k: 6768	n:10000
KS ci ratio: 1.323001e-01	ci left: 7.533730e-02	ci right 8.610844e-02	k: 806	n:10000
GIF   10000 perm   2 sec   (6393 perm/sec)   p_kst 8.060000e-02   p_cons 6.768000e-01   p_joint 7.341000e-01

Joint ci ratio: 5.179957e-02	ci left: 2.168009e-01	ci right 2.283799e-01	k: 4451	n:20000
Cons ci ratio: 1.895957e-02	ci left: 6.747408e-01	ci right 6.877065e-01	k: 13625	n:20000
KS ci ratio: 9.339492e-02	ci left: 7.715702e-02	ci right 8.476534e-02	k: 1618	n:20000
GIF   20000 perm   4 sec   (5464 perm/sec)   p_kst 8.090000e-02   p_cons 6.812500e-01   p_joint 2.225500e-01

Outputting figure to mutsig2_images.part000000000070/GIF.2_1290_20000_0.0809_0.68125_0.22255.png
                gene_name: GIF
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.081 
        ci_ks_bounds_left: 0.077 
       ci_ks_bounds_right: 0.085 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 96 percent done.
GIPC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.238453e-02	ci left: 5.845997e-01	ci right 6.039453e-01	k: 5943	n:10000
Cons ci ratio: 2.496645e-02	ci left: 7.024085e-01	ci right 7.202682e-01	k: 7114	n:10000
KS ci ratio: 9.468960e-02	ci left: 1.393291e-01	ci right 1.532776e-01	k: 1462	n:10000
GIPC2   10000 perm   1 sec   (6702 perm/sec)   p_kst 1.462000e-01   p_cons 7.114000e-01   p_joint 5.943000e-01

Outputting figure to mutsig2_images.part000000000070/GIPC2.2_972_10000_0.1462_0.7114_0.5943.png
                gene_name: GIPC2
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 98 percent done.
GIPC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.098259e-02	ci left: 4.678676e-01	ci right 4.875454e-01	k: 4777	n:10000
KS ci ratio: 2.210077e-02	ci left: 7.502904e-01	ci right 7.671586e-01	k: 7588	n:10000
GIPC3   10000 perm   2 sec   (6600 perm/sec)   p_kst 7.588000e-01   p_cons 4.777000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000070/GIPC3.2_963_10000_0.7588_0.4777_1.png
                gene_name: GIPC3
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000070
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 70 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1544>
Subject: Job 8004107: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1544>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000071> was used as the working directory.
Started at Sun Nov 11 15:06:13 2012
Results reported at Sun Nov 11 15:25:44 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000071.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000071.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 71  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000071.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1419.28 sec.
    Max Memory :      4768 MB
    Max Swap   :      7040 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
71
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 71
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 71: processing genes 6334 - 6423
Calculating significance of each gene.
Using projection method.
6334	GJB6	1
6335	GJB7	1
6336	GJC1	2.857248e-01
6337	GJC2	6.341727e-01
6338	GJC3	6.993195e-01
6339	GJD2	1
6340	GJD4	9.561881e-02
6341	GK	1.554489e-01
6342	GK2	4.553565e-02
6343	GK5	4.896407e-01
6344	GKAP1	2.684656e-01
6345	GKN1	5.260246e-01
6346	GKN2	3.358453e-02
6347	GLA	4.688910e-01
6348	GLB1	1
6349	GLB1L	7.736720e-01
6350	GLB1L2	2.459047e-01
6351	GLB1L3	2.989353e-01
6352	GLCCI1	1
6353	GLCE	1
6354	GLDC	5.908728e-01
6355	GLDN	1
6356	GLE1	9.190057e-01
6357	GLG1	9.781446e-01
6358	GLI1	9.875516e-01
6359	GLI2	6.834374e-01
6360	GLI3	1
6361	GLI4	2.727110e-01
6362	GLIPR1	1
6363	GLIPR1L1	2.098016e-01
6364	GLIPR1L2	2.108989e-02
6365	GLIPR2	1
6366	GLIS1	6.714667e-01
6367	GLIS2	5.966761e-01
6368	GLIS3	8.917866e-01
6369	GLMN	4.005065e-02
6370	GLO1	1
6371	GLOD4	1
6372	GLOD5	1.548853e-01
6373	GLP1R	6.831493e-01
6374	GLP2R	1.073994e-01
6375	GLRA1	5.270224e-01
6376	GLRA2	4.000029e-02
6377	GLRA3	2.814507e-01
6378	GLRA4	9.750546e-03
6379	GLRB	3.762371e-01
6380	GLRX	1
6381	GLRX2	5.548280e-01
6382	GLRX3	4.991122e-02
6383	GLRX5	1.635150e-01
6384	GLS	1.513084e-01
6385	GLS2	9.370152e-01
6386	GLT1D1	2.168501e-03
6387	GLT25D1	5.742491e-01
6388	GLT25D2	1
6389	GLT6D1	6.640322e-01
6390	GLT8D1	1
6391	GLT8D2	5.591889e-01
6392	GLTP	1
6393	GLTPD1	3.297994e-01
6394	GLTPD2	3.339729e-01
6395	GLTSCR2	3.691778e-01
6396	GLUD1	1.709823e-01
6397	GLUD2	4.105912e-02
6398	GLUL	6.742993e-02
6399	GLYAT	1
6400	GLYATL1	1.612156e-02
6401	GLYATL2	6.662662e-01
6402	GLYCTK	1
6403	GLYR1	1
6404	GM2A	1
6405	GMCL1	4.600402e-01
6406	GMDS	1
6407	GMEB1	1
6408	GMEB2	8.453081e-01
6409	GMFB	1
6410	GMFG	2.112284e-01
6411	GMIP	8.798877e-01
6412	GML	2.434865e-01
6413	GMNN	1.701120e-01
6414	GMPPA	4.002715e-01
6415	GMPPB	1
6416	GMPR	1
6417	GMPR2	1
6418	GMPS	1
6419	GNA11	5.990563e-01
6420	GNA12	3.309031e-01
6421	GNA13	6.085946e-01
6422	GNA14	2.402827e-01
6423	GNA15	5.997806e-01
Done

Running MutSig 2:
Scatter job 71: processing genes 6334 - 6423
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
GLI3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.512986e-01	ci left: 5.812294e-02	ci right 6.773362e-02	k: 628	n:10000
Cons ci ratio: 2.213698e-02	ci left: 7.496835e-01	ci right 7.665659e-01	k: 7582	n:10000
KS ci ratio: 2.248291e-01	ci left: 2.617677e-02	ci right 3.290101e-02	k: 294	n:10000
GLI3   10000 perm   3 sec   (3702 perm/sec)   p_kst 2.940000e-02   p_cons 7.582000e-01   p_joint 6.280000e-02

Joint ci ratio: 1.189533e-01	ci left: 4.842873e-02	ci right 5.460248e-02	k: 1029	n:20000
Cons ci ratio: 1.563194e-02	ci left: 7.527078e-01	ci right 7.646170e-01	k: 15174	n:20000
KS ci ratio: 1.633108e-01	ci left: 2.570945e-02	ci right 3.032914e-02	k: 559	n:20000
GLI3   20000 perm   9 sec   (2282 perm/sec)   p_kst 2.795000e-02   p_cons 7.587000e-01   p_joint 5.145000e-02

Joint ci ratio: 7.438172e-02	ci left: 8.157293e-02	ci right 8.790776e-02	k: 2541	n:30000
Cons ci ratio: 1.233901e-02	ci left: 7.660681e-01	ci right 7.756127e-01	k: 23126	n:30000
KS ci ratio: 1.302649e-01	ci left: 2.738837e-02	ci right 3.123684e-02	k: 878	n:30000
GLI3   30000 perm   12 sec   (2511 perm/sec)   p_kst 2.926667e-02   p_cons 7.708667e-01   p_joint 8.470000e-02

Joint ci ratio: 6.683003e-02	ci left: 7.654705e-02	ci right 8.186423e-02	k: 3167	n:40000
Cons ci ratio: 1.070606e-02	ci left: 7.660451e-01	ci right 7.743156e-01	k: 30808	n:40000
KS ci ratio: 1.103633e-01	ci left: 2.888515e-02	ci right 3.228345e-02	k: 1222	n:40000
GLI3   40000 perm   15 sec   (2622 perm/sec)   p_kst 3.055000e-02   p_cons 7.702000e-01   p_joint 7.917500e-02

Joint ci ratio: 6.676354e-02	ci left: 6.234254e-02	ci right 6.666819e-02	k: 3224	n:50000
Cons ci ratio: 9.572002e-03	ci left: 7.666276e-01	ci right 7.740210e-01	k: 38517	n:50000
KS ci ratio: 9.863736e-02	ci left: 2.910765e-02	ci right 3.214716e-02	k: 1530	n:50000
GLI3   50000 perm   19 sec   (2690 perm/sec)   p_kst 3.060000e-02   p_cons 7.703400e-01   p_joint 6.448000e-02

Outputting figure to mutsig2_images.part000000000071/GLI3.9_4799_50000_0.0306_0.77034_0.06448.png
                gene_name: GLI3
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.064 
     ci_joint_bounds_left: 0.062 
    ci_joint_bounds_right: 0.067 

Current progress: 2 percent done.
GLUD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.929614e-02	ci left: 4.888518e-01	ci right 5.085490e-01	k: 4987	n:10000
Cons ci ratio: 2.175662e-02	ci left: 7.560573e-01	ci right 7.727884e-01	k: 7645	n:10000
KS ci ratio: 5.347955e-02	ci left: 3.400502e-01	ci right 3.588375e-01	k: 3494	n:10000
GLUD2   10000 perm   2 sec   (5053 perm/sec)   p_kst 3.494000e-01   p_cons 7.645000e-01   p_joint 4.987000e-01

Outputting figure to mutsig2_images.part000000000071/GLUD2.9_1681_10000_0.3494_0.7645_0.4987.png
                gene_name: GLUD2
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 4 percent done.
GLRA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.795978e-02	ci left: 1.938730e-01	ci right 2.097011e-01	k: 2017	n:10000
Cons ci ratio: 3.969102e-02	ci left: 4.838540e-01	ci right 5.035497e-01	k: 4937	n:10000
KS ci ratio: 1.133002e-01	ci left: 1.008116e-01	ci right 1.130184e-01	k: 1068	n:10000
GLRA4   10000 perm   2 sec   (5291 perm/sec)   p_kst 1.068000e-01   p_cons 4.937000e-01   p_joint 2.017000e-01

Joint ci ratio: 6.052902e-02	ci left: 1.680770e-01	ci right 1.786181e-01	k: 3466	n:20000
Cons ci ratio: 2.880772e-02	ci left: 4.737539e-01	ci right 4.876517e-01	k: 9614	n:20000
KS ci ratio: 7.994950e-02	ci left: 1.029939e-01	ci right 1.116206e-01	k: 2145	n:20000
GLRA4   20000 perm   4 sec   (4774 perm/sec)   p_kst 1.072500e-01   p_cons 4.807000e-01   p_joint 1.733000e-01

Outputting figure to mutsig2_images.part000000000071/GLRA4.7_1385_20000_0.10725_0.4807_0.1733.png
                gene_name: GLRA4
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 7 percent done.
GK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.664240e-02	ci left: 6.747853e-01	ci right 6.931075e-01	k: 6840	n:10000
Cons ci ratio: 5.660918e-02	ci left: 3.148297e-01	ci right 3.332729e-01	k: 3240	n:10000
KS ci ratio: 3.688720e-02	ci left: 5.204606e-01	ci right 5.401218e-01	k: 5303	n:10000
GK2   10000 perm   2 sec   (5140 perm/sec)   p_kst 5.303000e-01   p_cons 3.240000e-01   p_joint 6.840000e-01

Outputting figure to mutsig2_images.part000000000071/GK2.6_1666_10000_0.5303_0.324_0.684.png
                gene_name: GK2
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 9 percent done.
GLB1L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.602870e-02	ci left: 4.105999e-01	ci right 4.300466e-01	k: 4203	n:10000
Cons ci ratio: 1.416165e-02	ci left: 8.781755e-01	ci right 8.907995e-01	k: 8846	n:10000
KS ci ratio: 6.002142e-02	ci left: 2.899374e-01	ci right 3.079799e-01	k: 2989	n:10000
GLB1L2   10000 perm   2 sec   (4931 perm/sec)   p_kst 2.989000e-01   p_cons 8.846000e-01   p_joint 4.203000e-01

Outputting figure to mutsig2_images.part000000000071/GLB1L2.6_1987_10000_0.2989_0.8846_0.4203.png
                gene_name: GLB1L2
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 11 percent done.
GLI2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.147777e-02	ci left: 9.156427e-01	ci right 9.263105e-01	k: 9211	n:10000
Cons ci ratio: 3.706525e-02	ci left: 5.180585e-01	ci right 5.377252e-01	k: 5279	n:10000
KS ci ratio: 1.299784e-02	ci left: 8.949790e-01	ci right 9.067863e-01	k: 9010	n:10000
GLI2   10000 perm   2 sec   (4119 perm/sec)   p_kst 9.010000e-01   p_cons 5.279000e-01   p_joint 9.211000e-01

Outputting figure to mutsig2_images.part000000000071/GLI2.6_4813_10000_0.901_0.5279_0.9211.png
                gene_name: GLI2
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 13 percent done.
GLMN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.875794e-02	ci left: 8.059280e-01	ci right 8.212889e-01	k: 8137	n:10000
Cons ci ratio: 3.116315e-02	ci left: 6.030707e-01	ci right 6.222637e-01	k: 6127	n:10000
KS ci ratio: 3.079018e-02	ci left: 6.087955e-01	ci right 6.279355e-01	k: 6184	n:10000
GLMN   10000 perm   2 sec   (5130 perm/sec)   p_kst 6.184000e-01   p_cons 6.127000e-01   p_joint 8.137000e-01

Outputting figure to mutsig2_images.part000000000071/GLMN.6_1857_10000_0.6184_0.6127_0.8137.png
                gene_name: GLMN
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 15 percent done.
GLP2R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.732256e-02	ci left: 6.637061e-01	ci right 6.821931e-01	k: 6730	n:10000
Cons ci ratio: 5.311696e-02	ci left: 3.431304e-01	ci right 3.619556e-01	k: 3525	n:10000
KS ci ratio: 3.790644e-02	ci left: 5.068520e-01	ci right 5.265383e-01	k: 5167	n:10000
GLP2R   10000 perm   2 sec   (5093 perm/sec)   p_kst 5.167000e-01   p_cons 3.525000e-01   p_joint 6.730000e-01

Outputting figure to mutsig2_images.part000000000071/GLP2R.5_1714_10000_0.5167_0.3525_0.673.png
                gene_name: GLP2R
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 17 percent done.
GLRA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.973534e-02	ci left: 7.897918e-01	ci right 8.056344e-01	k: 7978	n:10000
Cons ci ratio: 3.383534e-02	ci left: 5.632351e-01	ci right 5.827224e-01	k: 5730	n:10000
KS ci ratio: 2.731015e-02	ci left: 6.639075e-01	ci right 6.823916e-01	k: 6732	n:10000
GLRA2   10000 perm   2 sec   (5473 perm/sec)   p_kst 6.732000e-01   p_cons 5.730000e-01   p_joint 7.978000e-01

Outputting figure to mutsig2_images.part000000000071/GLRA2.5_1467_10000_0.6732_0.573_0.7978.png
                gene_name: GLRA2
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 20 percent done.
GLT1D1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.201360e-02	ci left: 9.085394e-01	ci right 9.196180e-01	k: 9142	n:10000
KS ci ratio: 1.723711e-02	ci left: 8.306303e-01	ci right 8.451723e-01	k: 8380	n:10000
GLT1D1   10000 perm   2 sec   (5429 perm/sec)   p_kst 8.380000e-01   p_cons 9.142000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000071/GLT1D1.5_833_10000_0.838_0.9142_1.png
                gene_name: GLT1D1
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 22 percent done.
GLYATL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.120715e-01	ci left: 1.028590e-01	ci right 1.151698e-01	k: 1089	n:10000
Cons ci ratio: 1.799496e-01	ci left: 4.121131e-02	ci right 4.945618e-02	k: 452	n:10000
KS ci ratio: 3.782306e-02	ci left: 5.079524e-01	ci right 5.276372e-01	k: 5178	n:10000
GLYATL1   10000 perm   2 sec   (5229 perm/sec)   p_kst 5.178000e-01   p_cons 4.520000e-02   p_joint 1.089000e-01

Joint ci ratio: 6.275318e-02	ci left: 1.581026e-01	ci right 1.683955e-01	k: 3264	n:20000
Cons ci ratio: 1.267345e-01	ci left: 4.275002e-02	ci right 4.858299e-02	k: 912	n:20000
KS ci ratio: 2.677096e-02	ci left: 5.103976e-01	ci right 5.242974e-01	k: 10347	n:20000
GLYATL1   20000 perm   4 sec   (4711 perm/sec)   p_kst 5.173500e-01   p_cons 4.560000e-02   p_joint 1.632000e-01

Joint ci ratio: 6.601641e-02	ci left: 1.016842e-01	ci right 1.086592e-01	k: 3154	n:30000
Cons ci ratio: 1.112595e-01	ci left: 3.751855e-02	ci right 4.197115e-02	k: 1191	n:30000
KS ci ratio: 2.190346e-02	ci left: 5.106604e-01	ci right 5.220031e-01	k: 15490	n:30000
GLYATL1   30000 perm   7 sec   (4604 perm/sec)   p_kst 5.163333e-01   p_cons 3.970000e-02   p_joint 1.051333e-01

Joint ci ratio: 6.695635e-02	ci left: 7.627627e-02	ci right 8.158504e-02	k: 3156	n:40000
Cons ci ratio: 9.558412e-02	ci left: 3.841811e-02	ci right 4.229898e-02	k: 1613	n:40000
KS ci ratio: 1.816963e-02	ci left: 5.328990e-01	ci right 5.426955e-01	k: 21512	n:40000
GLYATL1   40000 perm   9 sec   (4484 perm/sec)   p_kst 5.378000e-01   p_cons 4.032500e-02   p_joint 7.890000e-02

Outputting figure to mutsig2_images.part000000000071/GLYATL1.5_1030_40000_0.5378_0.040325_0.0789.png
                gene_name: GLYATL1
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.040 
      ci_cons_bounds_left: 0.038 
     ci_cons_bounds_right: 0.042 
                  p_joint: 0.079 
     ci_joint_bounds_left: 0.076 
    ci_joint_bounds_right: 0.082 

Current progress: 24 percent done.
GK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.997394e-02	ci left: 6.214554e-01	ci right 6.404682e-01	k: 6310	n:10000
Cons ci ratio: 5.849639e-02	ci left: 3.007434e-01	ci right 3.189675e-01	k: 3098	n:10000
KS ci ratio: 2.339214e-02	ci left: 7.286569e-01	ci right 7.460046e-01	k: 7374	n:10000
GK   10000 perm   2 sec   (5521 perm/sec)   p_kst 7.374000e-01   p_cons 3.098000e-01   p_joint 6.310000e-01

Outputting figure to mutsig2_images.part000000000071/GK.4_1764_10000_0.7374_0.3098_0.631.png
                gene_name: GK
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 26 percent done.
GLB1L3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.775496e-02	ci left: 5.088528e-01	ci right 5.285363e-01	k: 5187	n:10000
Cons ci ratio: 5.649311e-02	ci left: 3.157228e-01	ci right 3.341792e-01	k: 3249	n:10000
KS ci ratio: 5.055356e-02	ci left: 3.658968e-01	ci right 3.849758e-01	k: 3754	n:10000
GLB1L3   10000 perm   2 sec   (5618 perm/sec)   p_kst 3.754000e-01   p_cons 3.249000e-01   p_joint 5.187000e-01

Outputting figure to mutsig2_images.part000000000071/GLB1L3.4_2042_10000_0.3754_0.3249_0.5187.png
                gene_name: GLB1L3
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 28 percent done.
GLDC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.885890e-02	ci left: 1.556131e-01	ci right 1.701838e-01	k: 1628	n:10000
Cons ci ratio: 6.528310e-02	ci left: 2.562705e-01	ci right 2.736666e-01	k: 2649	n:10000
KS ci ratio: 7.899090e-02	ci left: 1.897361e-01	ci right 2.054405e-01	k: 1975	n:10000
GLDC   10000 perm   2 sec   (5025 perm/sec)   p_kst 1.975000e-01   p_cons 2.649000e-01   p_joint 1.628000e-01

Outputting figure to mutsig2_images.part000000000071/GLDC.4_3163_10000_0.1975_0.2649_0.1628.png
                gene_name: GLDC
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 30 percent done.
GLIPR1L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.920312e-01	ci left: 3.614841e-02	ci right 4.392246e-02	k: 399	n:10000
Cons ci ratio: 4.113205e-01	ci left: 7.153353e-03	ci right 1.094096e-02	k: 89	n:10000
KS ci ratio: 6.981304e-02	ci left: 2.312609e-01	ci right 2.480910e-01	k: 2396	n:10000
GLIPR1L2   10000 perm   2 sec   (5547 perm/sec)   p_kst 2.396000e-01   p_cons 8.900000e-03   p_joint 3.990000e-02

Joint ci ratio: 1.930428e-01	ci left: 1.824762e-02	ci right 2.219360e-02	k: 403	n:20000
Cons ci ratio: 2.916733e-01	ci left: 7.645156e-03	ci right 1.030055e-02	k: 178	n:20000
KS ci ratio: 4.955608e-02	ci left: 2.323592e-01	ci right 2.442169e-01	k: 4765	n:20000
GLIPR1L2   20000 perm   4 sec   (5200 perm/sec)   p_kst 2.382500e-01   p_cons 8.900000e-03   p_joint 2.015000e-02

Joint ci ratio: 1.312683e-01	ci left: 2.696883e-02	ci right 3.078980e-02	k: 865	n:30000
Cons ci ratio: 2.463869e-01	ci left: 7.335823e-03	ci right 9.427729e-03	k: 250	n:30000
KS ci ratio: 4.060418e-02	ci left: 2.321970e-01	ci right 2.418540e-01	k: 7110	n:30000
GLIPR1L2   30000 perm   6 sec   (5020 perm/sec)   p_kst 2.370000e-01   p_cons 8.333333e-03   p_joint 2.883333e-02

Joint ci ratio: 1.099007e-01	ci left: 2.912846e-02	ci right 3.254010e-02	k: 1232	n:40000
Cons ci ratio: 2.104389e-01	ci left: 7.694740e-03	ci right 9.527670e-03	k: 343	n:40000
KS ci ratio: 3.509720e-02	ci left: 2.335351e-01	ci right 2.419030e-01	k: 9508	n:40000
GLIPR1L2   40000 perm   8 sec   (4892 perm/sec)   p_kst 2.377000e-01   p_cons 8.575000e-03   p_joint 3.080000e-02

Joint ci ratio: 1.101584e-01	ci left: 2.333774e-02	ci right 2.607782e-02	k: 1234	n:50000
Cons ci ratio: 1.831358e-01	ci left: 8.248079e-03	ci right 9.929659e-03	k: 453	n:50000
KS ci ratio: 3.125267e-02	ci left: 2.355854e-01	ci right 2.430849e-01	k: 11966	n:50000
GLIPR1L2   50000 perm   11 sec   (4748 perm/sec)   p_kst 2.393200e-01   p_cons 9.060000e-03   p_joint 2.468000e-02

Joint ci ratio: 9.879752e-02	ci left: 2.430211e-02	ci right 2.684406e-02	k: 1533	n:60000
Cons ci ratio: 1.659240e-01	ci left: 8.451539e-03	ci right 9.996492e-03	k: 552	n:60000
KS ci ratio: 2.850149e-02	ci left: 2.362719e-01	ci right 2.431200e-01	k: 14381	n:60000
GLIPR1L2   60000 perm   13 sec   (4648 perm/sec)   p_kst 2.396833e-01   p_cons 9.200000e-03   p_joint 2.555000e-02

Joint ci ratio: 9.402520e-02	ci left: 2.308819e-02	ci right 2.538005e-02	k: 1695	n:70000
Cons ci ratio: 1.533962e-01	ci left: 8.533471e-03	ci right 9.964795e-03	k: 646	n:70000
KS ci ratio: 2.635628e-02	ci left: 2.369536e-01	ci right 2.432965e-01	k: 16808	n:70000
GLIPR1L2   70000 perm   15 sec   (4562 perm/sec)   p_kst 2.401143e-01   p_cons 9.228571e-03   p_joint 2.421429e-02

Joint ci ratio: 8.643999e-02	ci left: 2.397808e-02	ci right 2.615655e-02	k: 2004	n:80000
Cons ci ratio: 1.432379e-01	ci left: 8.610279e-03	ci right 9.950670e-03	k: 741	n:80000
KS ci ratio: 2.463825e-02	ci left: 2.373923e-01	ci right 2.433266e-01	k: 19228	n:80000
GLIPR1L2   80000 perm   18 sec   (4470 perm/sec)   p_kst 2.403500e-01   p_cons 9.262500e-03   p_joint 2.505000e-02

Joint ci ratio: 9.159608e-02	ci left: 1.903012e-02	ci right 2.086767e-02	k: 1794	n:90000
Cons ci ratio: 1.362665e-01	ci left: 8.489920e-03	ci right 9.742026e-03	k: 819	n:90000
KS ci ratio: 2.318165e-02	ci left: 2.383082e-01	ci right 2.439085e-01	k: 21699	n:90000
GLIPR1L2   90000 perm   21 sec   (4384 perm/sec)   p_kst 2.411000e-01   p_cons 9.100000e-03   p_joint 1.993333e-02

Joint ci ratio: 7.346925e-02	ci left: 2.666210e-02	ci right 2.870542e-02	k: 2767	n:100000
Cons ci ratio: 1.287127e-01	ci left: 8.598162e-03	ci right 9.790567e-03	k: 918	n:100000
KS ci ratio: 2.200655e-02	ci left: 2.382123e-01	ci right 2.435228e-01	k: 24086	n:100000
GLIPR1L2   100000 perm   23 sec   (4299 perm/sec)   p_kst 2.408600e-01   p_cons 9.180000e-03   p_joint 2.767000e-02

Joint ci ratio: 7.305152e-02	ci left: 2.457642e-02	ci right 2.644871e-02	k: 2805	n:110000
Cons ci ratio: 1.221086e-01	ci left: 8.714737e-03	ci right 9.856815e-03	k: 1020	n:110000
KS ci ratio: 2.097758e-02	ci left: 2.384205e-01	ci right 2.434841e-01	k: 26504	n:110000
GLIPR1L2   110000 perm   26 sec   (4222 perm/sec)   p_kst 2.409455e-01   p_cons 9.272727e-03   p_joint 2.550000e-02

Joint ci ratio: 7.137941e-02	ci left: 2.364084e-02	ci right 2.539891e-02	k: 2941	n:120000
Cons ci ratio: 1.172196e-01	ci left: 8.691805e-03	ci right 9.782110e-03	k: 1107	n:120000
KS ci ratio: 2.006601e-02	ci left: 2.388646e-01	ci right 2.437145e-01	k: 28954	n:120000
GLIPR1L2   120000 perm   29 sec   (4144 perm/sec)   p_kst 2.412833e-01   p_cons 9.225000e-03   p_joint 2.450833e-02

Joint ci ratio: 6.390369e-02	ci left: 2.723107e-02	ci right 2.903621e-02	k: 3656	n:130000
Cons ci ratio: 1.118399e-01	ci left: 8.837691e-03	ci right 9.892061e-03	k: 1216	n:130000
KS ci ratio: 1.930635e-02	ci left: 2.384394e-01	ci right 2.430953e-01	k: 31299	n:130000
GLIPR1L2   130000 perm   32 sec   (4074 perm/sec)   p_kst 2.407615e-01   p_cons 9.353846e-03   p_joint 2.812308e-02

Joint ci ratio: 6.226832e-02	ci left: 2.667070e-02	ci right 2.839181e-02	k: 3853	n:140000
Cons ci ratio: 1.084678e-01	ci left: 8.741250e-03	ci right 9.750661e-03	k: 1293	n:140000
KS ci ratio: 1.859124e-02	ci left: 2.387757e-01	ci right 2.432636e-01	k: 33742	n:140000
GLIPR1L2   140000 perm   35 sec   (4007 perm/sec)   p_kst 2.410143e-01   p_cons 9.235714e-03   p_joint 2.752143e-02

Joint ci ratio: 6.210415e-02	ci left: 2.506920e-02	ci right 2.668253e-02	k: 3880	n:150000
Cons ci ratio: 1.053446e-01	ci left: 8.664578e-03	ci right 9.634537e-03	k: 1371	n:150000
KS ci ratio: 1.796976e-02	ci left: 2.386712e-01	ci right 2.430055e-01	k: 36125	n:150000
GLIPR1L2   150000 perm   38 sec   (3939 perm/sec)   p_kst 2.408333e-01   p_cons 9.140000e-03   p_joint 2.586667e-02

Joint ci ratio: 5.192603e-02	ci left: 3.349995e-02	ci right 3.529198e-02	k: 5502	n:160000
Cons ci ratio: 1.014229e-01	ci left: 8.780618e-03	ci right 9.724794e-03	k: 1479	n:160000
KS ci ratio: 1.739272e-02	ci left: 2.388748e-01	ci right 2.430721e-01	k: 38555	n:160000
GLIPR1L2   160000 perm   41 sec   (3872 perm/sec)   p_kst 2.409688e-01   p_cons 9.243750e-03   p_joint 3.438750e-02

Joint ci ratio: 4.972724e-02	ci left: 3.438709e-02	ci right 3.614645e-02	k: 5994	n:170000
Cons ci ratio: 9.856879e-02	ci left: 8.763073e-03	ci right 9.677311e-03	k: 1566	n:170000
KS ci ratio: 1.689727e-02	ci left: 2.384229e-01	ci right 2.424918e-01	k: 40877	n:170000
GLIPR1L2   170000 perm   45 sec   (3810 perm/sec)   p_kst 2.404529e-01   p_cons 9.211765e-03   p_joint 3.525882e-02

Outputting figure to mutsig2_images.part000000000071/GLIPR1L2.4_778_170000_0.24045_0.0092118_0.035259.png
                gene_name: GLIPR1L2
               theta_stop: 0.099 
                    nperm: 170000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.0092 
      ci_cons_bounds_left: 0.0088 
     ci_cons_bounds_right: 0.0097 
                  p_joint: 0.035 
     ci_joint_bounds_left: 0.034 
    ci_joint_bounds_right: 0.036 

Current progress: 33 percent done.
GLRX3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.058498e-01	ci left: 1.141806e-01	ci right 1.270413e-01	k: 1205	n:10000
Cons ci ratio: 5.319759e-01	ci left: 3.972510e-03	ci right 6.926868e-03	k: 53	n:10000
KS ci ratio: 4.775176e-02	ci left: 3.928679e-01	ci right 4.121890e-01	k: 4025	n:10000
GLRX3   10000 perm   2 sec   (5800 perm/sec)   p_kst 4.025000e-01   p_cons 5.300000e-03   p_joint 1.205000e-01

Joint ci ratio: 1.136954e-01	ci left: 5.290189e-02	ci right 5.932793e-02	k: 1121	n:20000
Cons ci ratio: 3.970395e-01	ci left: 3.889694e-03	ci right 5.858508e-03	k: 96	n:20000
KS ci ratio: 3.367422e-02	ci left: 3.970392e-01	ci right 4.106888e-01	k: 8077	n:20000
GLRX3   20000 perm   4 sec   (5217 perm/sec)   p_kst 4.038500e-01   p_cons 4.800000e-03   p_joint 5.605000e-02

Joint ci ratio: 1.057862e-01	ci left: 4.144684e-02	ci right 4.610870e-02	k: 1312	n:30000
Cons ci ratio: 3.366144e-01	ci left: 3.743736e-03	ci right 5.287973e-03	k: 134	n:30000
KS ci ratio: 2.733746e-02	ci left: 4.010675e-01	ci right 4.122172e-01	k: 12199	n:30000
GLRX3   30000 perm   6 sec   (5000 perm/sec)   p_kst 4.066333e-01   p_cons 4.466667e-03   p_joint 4.373333e-02

Joint ci ratio: 1.146398e-01	ci left: 2.676963e-02	ci right 3.004931e-02	k: 1135	n:40000
Cons ci ratio: 2.931583e-01	ci left: 3.798247e-03	ci right 5.125276e-03	k: 177	n:40000
KS ci ratio: 2.358520e-02	ci left: 4.036522e-01	ci right 4.133111e-01	k: 16339	n:40000
GLRX3   40000 perm   8 sec   (4847 perm/sec)   p_kst 4.084750e-01   p_cons 4.425000e-03   p_joint 2.837500e-02

Joint ci ratio: 6.767662e-02	ci left: 6.074801e-02	ci right 6.502292e-02	k: 3143	n:50000
Cons ci ratio: 2.567603e-01	ci left: 4.044513e-03	ci right 5.254105e-03	k: 231	n:50000
KS ci ratio: 2.115382e-02	ci left: 4.028291e-01	ci right 4.114617e-01	k: 20357	n:50000
GLRX3   50000 perm   11 sec   (4713 perm/sec)   p_kst 4.071400e-01   p_cons 4.620000e-03   p_joint 6.286000e-02

Joint ci ratio: 6.310976e-02	ci left: 5.850679e-02	ci right 6.233587e-02	k: 3624	n:60000
Cons ci ratio: 2.308343e-01	ci left: 4.231286e-03	ci right 5.350776e-03	k: 286	n:60000
KS ci ratio: 1.930243e-02	ci left: 4.034148e-01	ci right 4.112942e-01	k: 24441	n:60000
GLRX3   60000 perm   13 sec   (4601 perm/sec)   p_kst 4.073500e-01   p_cons 4.766667e-03   p_joint 6.040000e-02

Joint ci ratio: 6.815236e-02	ci left: 4.358847e-02	ci right 4.667795e-02	k: 3158	n:70000
Cons ci ratio: 2.105235e-01	ci left: 4.409718e-03	ci right 5.460537e-03	k: 344	n:70000
KS ci ratio: 1.791382e-02	ci left: 4.025443e-01	ci right 4.098349e-01	k: 28433	n:70000
GLRX3   70000 perm   16 sec   (4502 perm/sec)   p_kst 4.061857e-01   p_cons 4.914286e-03   p_joint 4.511429e-02

Joint ci ratio: 6.661605e-02	ci left: 4.010375e-02	ci right 4.287963e-02	k: 3318	n:80000
Cons ci ratio: 1.975030e-01	ci left: 4.416016e-03	ci right 5.395419e-03	k: 391	n:80000
KS ci ratio: 1.675467e-02	ci left: 4.028439e-01	ci right 4.096629e-01	k: 32500	n:80000
GLRX3   80000 perm   18 sec   (4405 perm/sec)   p_kst 4.062500e-01   p_cons 4.887500e-03   p_joint 4.147500e-02

Joint ci ratio: 6.289307e-02	ci left: 4.007491e-02	ci right 4.268809e-02	k: 3723	n:90000
Cons ci ratio: 1.862077e-01	ci left: 4.443664e-03	ci right 5.366470e-03	k: 440	n:90000
KS ci ratio: 1.577596e-02	ci left: 4.036658e-01	ci right 4.100957e-01	k: 36619	n:90000
GLRX3   90000 perm   21 sec   (4311 perm/sec)   p_kst 4.068778e-01   p_cons 4.888889e-03   p_joint 4.136667e-02

Joint ci ratio: 5.943211e-02	ci left: 4.044961e-02	ci right 4.293707e-02	k: 4168	n:100000
Cons ci ratio: 1.748680e-01	ci left: 4.562680e-03	ci right 5.446407e-03	k: 499	n:100000
KS ci ratio: 1.498901e-02	ci left: 4.031039e-01	ci right 4.092016e-01	k: 40615	n:100000
GLRX3   100000 perm   24 sec   (4232 perm/sec)   p_kst 4.061500e-01   p_cons 4.990000e-03   p_joint 4.168000e-02

Joint ci ratio: 5.399851e-02	ci left: 4.448231e-02	ci right 4.695989e-02	k: 5028	n:110000
Cons ci ratio: 1.678068e-01	ci left: 4.522032e-03	ci right 5.358943e-03	k: 542	n:110000
KS ci ratio: 1.428920e-02	ci left: 4.033229e-01	ci right 4.091366e-01	k: 44685	n:110000
GLRX3   110000 perm   26 sec   (4154 perm/sec)   p_kst 4.062273e-01   p_cons 4.927273e-03   p_joint 4.570909e-02

Joint ci ratio: 5.508525e-02	ci left: 3.937516e-02	ci right 4.161378e-02	k: 4858	n:120000
Cons ci ratio: 1.594986e-01	ci left: 4.608760e-03	ci right 5.415447e-03	k: 600	n:120000
KS ci ratio: 1.369538e-02	ci left: 4.029366e-01	ci right 4.085013e-01	k: 48686	n:120000
GLRX3   120000 perm   29 sec   (4072 perm/sec)   p_kst 4.057167e-01   p_cons 5.000000e-03   p_joint 4.048333e-02

Joint ci ratio: 5.023813e-02	ci left: 4.361341e-02	ci right 4.586849e-02	k: 5815	n:130000
Cons ci ratio: 1.534883e-01	ci left: 4.609014e-03	ci right 5.382550e-03	k: 648	n:130000
KS ci ratio: 1.315353e-02	ci left: 4.032135e-01	ci right 4.085599e-01	k: 52765	n:130000
GLRX3   130000 perm   32 sec   (4006 perm/sec)   p_kst 4.058846e-01   p_cons 4.984615e-03   p_joint 4.473077e-02

Joint ci ratio: 5.227517e-02	ci left: 3.760396e-02	ci right 3.962949e-02	k: 5405	n:140000
Cons ci ratio: 1.462243e-01	ci left: 4.733580e-03	ci right 5.487141e-03	k: 714	n:140000
KS ci ratio: 1.267748e-02	ci left: 4.032191e-01	ci right 4.083706e-01	k: 56811	n:140000
GLRX3   140000 perm   36 sec   (3936 perm/sec)   p_kst 4.057929e-01   p_cons 5.100000e-03   p_joint 3.860714e-02

Joint ci ratio: 5.195260e-02	ci left: 3.561586e-02	ci right 3.752210e-02	k: 5484	n:150000
Cons ci ratio: 1.408116e-01	ci left: 4.777946e-03	ci right 5.508050e-03	k: 770	n:150000
KS ci ratio: 1.224371e-02	ci left: 4.034600e-01	ci right 4.084369e-01	k: 60892	n:150000
GLRX3   150000 perm   39 sec   (3869 perm/sec)   p_kst 4.059467e-01   p_cons 5.133333e-03   p_joint 3.656000e-02

Joint ci ratio: 4.943103e-02	ci left: 3.688314e-02	ci right 3.875866e-02	k: 6050	n:160000
Cons ci ratio: 1.357936e-01	ci left: 4.829292e-03	ci right 5.538820e-03	k: 828	n:160000
KS ci ratio: 1.185147e-02	ci left: 4.036797e-01	ci right 4.084987e-01	k: 64974	n:160000
GLRX3   160000 perm   42 sec   (3807 perm/sec)   p_kst 4.060875e-01   p_cons 5.175000e-03   p_joint 3.781250e-02

Joint ci ratio: 4.906098e-02	ci left: 3.530543e-02	ci right 3.708690e-02	k: 6152	n:170000
Cons ci ratio: 1.324830e-01	ci left: 4.783977e-03	ci right 5.468361e-03	k: 870	n:170000
KS ci ratio: 1.150532e-02	ci left: 4.034292e-01	ci right 4.081034e-01	k: 68980	n:170000
GLRX3   170000 perm   45 sec   (3745 perm/sec)   p_kst 4.057647e-01   p_cons 5.117647e-03   p_joint 3.618824e-02

Joint ci ratio: 5.140566e-02	ci left: 3.048939e-02	ci right 3.210353e-02	k: 5632	n:180000
Cons ci ratio: 1.291901e-01	ci left: 4.760014e-03	ci right 5.422746e-03	k: 915	n:180000
KS ci ratio: 1.117482e-02	ci left: 4.037690e-01	ci right 4.083119e-01	k: 73087	n:180000
GLRX3   180000 perm   49 sec   (3678 perm/sec)   p_kst 4.060389e-01   p_cons 5.083333e-03   p_joint 3.128889e-02

Joint ci ratio: 4.693678e-02	ci left: 3.457877e-02	ci right 3.624597e-02	k: 6727	n:190000
Cons ci ratio: 1.260652e-01	ci left: 4.743860e-03	ci right 5.387173e-03	k: 961	n:190000
KS ci ratio: 1.089821e-02	ci left: 4.028809e-01	ci right 4.073009e-01	k: 76967	n:190000
GLRX3   190000 perm   52 sec   (3622 perm/sec)   p_kst 4.050895e-01   p_cons 5.057895e-03   p_joint 3.540526e-02

Joint ci ratio: 4.817841e-02	ci left: 3.126754e-02	ci right 3.281606e-02	k: 6407	n:200000
Cons ci ratio: 1.221857e-01	ci left: 4.807052e-03	ci right 5.437423e-03	k: 1023	n:200000
KS ci ratio: 1.062578e-02	ci left: 4.027776e-01	ci right 4.070852e-01	k: 80986	n:200000
GLRX3   200000 perm   56 sec   (3566 perm/sec)   p_kst 4.049300e-01   p_cons 5.115000e-03   p_joint 3.203500e-02

Joint ci ratio: 4.722218e-02	ci left: 3.102066e-02	ci right 3.252563e-02	k: 6671	n:210000
Cons ci ratio: 1.193639e-01	ci left: 4.804429e-03	ci right 5.418878e-03	k: 1072	n:210000
KS ci ratio: 1.036871e-02	ci left: 4.028756e-01	ci right 4.070794e-01	k: 85045	n:210000
GLRX3   210000 perm   60 sec   (3514 perm/sec)   p_kst 4.049762e-01   p_cons 5.104762e-03   p_joint 3.176667e-02

Joint ci ratio: 4.774668e-02	ci left: 2.901703e-02	ci right 3.044085e-02	k: 6539	n:220000
Cons ci ratio: 1.173614e-01	ci left: 4.749240e-03	ci right 5.345734e-03	k: 1109	n:220000
KS ci ratio: 1.012295e-02	ci left: 4.032747e-01	ci right 4.073823e-01	k: 89172	n:220000
GLRX3   220000 perm   64 sec   (3461 perm/sec)   p_kst 4.053273e-01   p_cons 5.040909e-03   p_joint 2.972273e-02

Joint ci ratio: 4.066635e-02	ci left: 3.804024e-02	ci right 3.962358e-02	k: 8930	n:230000
Cons ci ratio: 1.144577e-01	ci left: 4.783397e-03	ci right 5.368313e-03	k: 1166	n:230000
KS ci ratio: 9.901897e-03	ci left: 4.032492e-01	ci right 4.072663e-01	k: 93209	n:230000
GLRX3   230000 perm   67 sec   (3411 perm/sec)   p_kst 4.052565e-01   p_cons 5.069565e-03   p_joint 3.882609e-02

Joint ci ratio: 3.921482e-02	ci left: 3.918647e-02	ci right 4.075800e-02	k: 9592	n:240000
Cons ci ratio: 1.120820e-01	ci left: 4.786520e-03	ci right 5.358866e-03	k: 1216	n:240000
KS ci ratio: 9.689275e-03	ci left: 4.034973e-01	ci right 4.074300e-01	k: 97311	n:240000
GLRX3   240000 perm   71 sec   (3362 perm/sec)   p_kst 4.054625e-01   p_cons 5.066667e-03   p_joint 3.996667e-02

Joint ci ratio: 3.887807e-02	ci left: 3.831580e-02	ci right 3.983891e-02	k: 9768	n:250000
Cons ci ratio: 1.097179e-01	ci left: 4.801181e-03	ci right 5.362388e-03	k: 1269	n:250000
KS ci ratio: 9.496558e-03	ci left: 4.033826e-01	ci right 4.072356e-01	k: 101327	n:250000
GLRX3   250000 perm   75 sec   (3314 perm/sec)   p_kst 4.053080e-01   p_cons 5.076000e-03   p_joint 3.907200e-02

Joint ci ratio: 3.644694e-02	ci left: 4.181928e-02	ci right 4.337555e-02	k: 11074	n:260000
Cons ci ratio: 1.078255e-01	ci left: 4.784886e-03	ci right 5.333928e-03	k: 1314	n:260000
KS ci ratio: 9.309327e-03	ci left: 4.035658e-01	ci right 4.073440e-01	k: 105418	n:260000
GLRX3   260000 perm   80 sec   (3267 perm/sec)   p_kst 4.054538e-01   p_cons 5.053846e-03   p_joint 4.259231e-02

Joint ci ratio: 3.214477e-02	ci left: 5.136396e-02	ci right 5.304567e-02	k: 14094	n:270000
Cons ci ratio: 1.058323e-01	ci left: 4.787905e-03	ci right 5.326507e-03	k: 1364	n:270000
KS ci ratio: 9.135697e-03	ci left: 4.035806e-01	ci right 4.072881e-01	k: 109467	n:270000
GLRX3   270000 perm   84 sec   (3221 perm/sec)   p_kst 4.054333e-01   p_cons 5.051852e-03   p_joint 5.220000e-02

Joint ci ratio: 3.539468e-02	ci left: 4.122457e-02	ci right 4.271350e-02	k: 11750	n:280000
Cons ci ratio: 1.034692e-01	ci left: 4.836026e-03	ci right 5.367154e-03	k: 1427	n:280000
KS ci ratio: 8.973228e-03	ci left: 4.034986e-01	ci right 4.071391e-01	k: 113489	n:280000
GLRX3   280000 perm   88 sec   (3176 perm/sec)   p_kst 4.053179e-01   p_cons 5.096429e-03   p_joint 4.196429e-02

Joint ci ratio: 3.483839e-02	ci left: 4.110182e-02	ci right 4.256252e-02	k: 12130	n:290000
Cons ci ratio: 1.017387e-01	ci left: 4.833896e-03	ci right 5.355380e-03	k: 1476	n:290000
KS ci ratio: 8.819444e-03	ci left: 4.034056e-01	ci right 4.069825e-01	k: 117506	n:290000
GLRX3   290000 perm   93 sec   (3132 perm/sec)   p_kst 4.051931e-01   p_cons 5.089655e-03   p_joint 4.182759e-02

Joint ci ratio: 3.430609e-02	ci left: 4.099074e-02	ci right 4.242480e-02	k: 12511	n:300000
Cons ci ratio: 1.001583e-01	ci left: 4.825476e-03	ci right 5.337490e-03	k: 1523	n:300000
KS ci ratio: 8.670726e-03	ci left: 4.034625e-01	ci right 4.069793e-01	k: 121566	n:300000
GLRX3   300000 perm   97 sec   (3091 perm/sec)   p_kst 4.052200e-01   p_cons 5.076667e-03   p_joint 4.170333e-02

Joint ci ratio: 3.394192e-02	ci left: 4.055102e-02	ci right 4.195434e-02	k: 12787	n:310000
Cons ci ratio: 9.824159e-02	ci left: 4.858566e-03	ci right 5.363657e-03	k: 1583	n:310000
KS ci ratio: 8.524208e-03	ci left: 4.038031e-01	ci right 4.072631e-01	k: 125715	n:310000
GLRX3   310000 perm   102 sec   (3052 perm/sec)   p_kst 4.055323e-01   p_cons 5.106452e-03   p_joint 4.124839e-02

Outputting figure to mutsig2_images.part000000000071/GLRX3.4_1052_310000_0.40553_0.0051065_0.041248.png
                gene_name: GLRX3
               theta_stop: 0.098 
                    nperm: 310000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.0051 
      ci_cons_bounds_left: 0.0049 
     ci_cons_bounds_right: 0.0054 
                  p_joint: 0.041 
     ci_joint_bounds_left: 0.041 
    ci_joint_bounds_right: 0.042 

Current progress: 35 percent done.
GLS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.256183e-01	ci left: 2.598777e-02	ci right 3.269015e-02	k: 292	n:10000
Cons ci ratio: 6.816792e-02	ci left: 2.399555e-01	ci right 2.569912e-01	k: 2484	n:10000
KS ci ratio: 5.529567e-01	ci left: 3.627180e-03	ci right 6.472945e-03	k: 49	n:10000
GLS   10000 perm   2 sec   (5569 perm/sec)   p_kst 4.900000e-03   p_cons 2.484000e-01   p_joint 2.920000e-02

Joint ci ratio: 2.313597e-01	ci left: 1.251190e-02	ci right 1.583155e-02	k: 282	n:20000
Cons ci ratio: 4.862553e-02	ci left: 2.392501e-01	ci right 2.512240e-01	k: 4904	n:20000
KS ci ratio: 3.467290e-01	ci left: 5.250702e-03	ci right 7.496443e-03	k: 126	n:20000
GLS   20000 perm   4 sec   (5037 perm/sec)   p_kst 6.300000e-03   p_cons 2.452000e-01   p_joint 1.410000e-02

Joint ci ratio: 2.663777e-01	ci left: 6.212330e-03	ci right 8.151619e-03	k: 214	n:30000
Cons ci ratio: 4.057801e-02	ci left: 2.324287e-01	ci right 2.420889e-01	k: 7117	n:30000
KS ci ratio: 2.790792e-01	ci left: 5.622041e-03	ci right 7.475468e-03	k: 195	n:30000
GLS   30000 perm   6 sec   (4844 perm/sec)   p_kst 6.500000e-03   p_cons 2.372333e-01   p_joint 7.133333e-03

Joint ci ratio: 1.993389e-01	ci left: 8.620141e-03	ci right 1.055206e-02	k: 382	n:40000
Cons ci ratio: 3.518457e-02	ci left: 2.326406e-01	ci right 2.409976e-01	k: 9472	n:40000
KS ci ratio: 2.446932e-01	ci left: 5.595075e-03	ci right 7.177869e-03	k: 254	n:40000
GLS   40000 perm   9 sec   (4699 perm/sec)   p_kst 6.350000e-03   p_cons 2.368000e-01   p_joint 9.550000e-03

Joint ci ratio: 1.962039e-01	ci left: 7.142690e-03	ci right 8.715247e-03	k: 395	n:50000
Cons ci ratio: 3.146180e-02	ci left: 2.331786e-01	ci right 2.406520e-01	k: 11845	n:50000
KS ci ratio: 2.150735e-01	ci left: 5.890100e-03	ci right 7.328084e-03	k: 329	n:50000
GLS   50000 perm   11 sec   (4574 perm/sec)   p_kst 6.580000e-03   p_cons 2.369000e-01   p_joint 7.900000e-03

Joint ci ratio: 1.767255e-01	ci left: 7.414259e-03	ci right 8.867254e-03	k: 487	n:60000
Cons ci ratio: 2.885787e-02	ci left: 2.317943e-01	ci right 2.385980e-01	k: 14111	n:60000
KS ci ratio: 1.953440e-01	ci left: 6.015290e-03	ci right 7.333110e-03	k: 399	n:60000
GLS   60000 perm   13 sec   (4466 perm/sec)   p_kst 6.650000e-03   p_cons 2.351833e-01   p_joint 8.116667e-03

Joint ci ratio: 1.937401e-01	ci left: 5.250886e-03	ci right 6.390664e-03	k: 406	n:70000
Cons ci ratio: 2.671297e-02	ci left: 2.321046e-01	ci right 2.384030e-01	k: 16467	n:70000
KS ci ratio: 1.807886e-01	ci left: 6.068111e-03	ci right 7.287608e-03	k: 466	n:70000
GLS   70000 perm   16 sec   (4360 perm/sec)   p_kst 6.657143e-03   p_cons 2.352429e-01   p_joint 5.800000e-03

Joint ci ratio: 1.770896e-01	ci left: 5.548265e-03	ci right 6.638020e-03	k: 486	n:80000
Cons ci ratio: 2.500383e-02	ci left: 2.320777e-01	ci right 2.379665e-01	k: 18801	n:80000
KS ci ratio: 1.655155e-01	ci left: 6.386008e-03	ci right 7.550179e-03	k: 556	n:80000
GLS   80000 perm   19 sec   (4274 perm/sec)   p_kst 6.950000e-03   p_cons 2.350125e-01   p_joint 6.075000e-03

Joint ci ratio: 1.539151e-01	ci left: 6.604579e-03	ci right 7.716431e-03	k: 643	n:90000
Cons ci ratio: 2.362148e-02	ci left: 2.315248e-01	ci right 2.370701e-01	k: 21086	n:90000
KS ci ratio: 1.553799e-01	ci left: 6.476372e-03	ci right 7.577984e-03	k: 631	n:90000
GLS   90000 perm   22 sec   (4185 perm/sec)   p_kst 7.011111e-03   p_cons 2.342889e-01   p_joint 7.144444e-03

Joint ci ratio: 1.508206e-01	ci left: 6.203728e-03	ci right 7.225199e-03	k: 670	n:100000
Cons ci ratio: 2.243870e-02	ci left: 2.311994e-01	ci right 2.364560e-01	k: 23382	n:100000
KS ci ratio: 1.479615e-01	ci left: 6.454070e-03	ci right 7.494835e-03	k: 696	n:100000
GLS   100000 perm   24 sec   (4096 perm/sec)   p_kst 6.960000e-03   p_cons 2.338200e-01   p_joint 6.700000e-03

Joint ci ratio: 1.446028e-01	ci left: 6.156287e-03	ci right 7.124547e-03	k: 729	n:110000
Cons ci ratio: 2.139517e-02	ci left: 2.313104e-01	ci right 2.363218e-01	k: 25719	n:110000
KS ci ratio: 1.420776e-01	ci left: 6.384226e-03	ci right 7.369317e-03	k: 755	n:110000
GLS   110000 perm   27 sec   (4022 perm/sec)   p_kst 6.863636e-03   p_cons 2.338091e-01   p_joint 6.627273e-03

Joint ci ratio: 1.344561e-01	ci left: 6.560225e-03	ci right 7.513832e-03	k: 843	n:120000
Cons ci ratio: 2.047488e-02	ci left: 2.315820e-01	ci right 2.363809e-01	k: 28077	n:120000
KS ci ratio: 1.356756e-01	ci left: 6.439422e-03	ci right 7.384643e-03	k: 828	n:120000
GLS   120000 perm   30 sec   (3952 perm/sec)   p_kst 6.900000e-03   p_cons 2.339750e-01   p_joint 7.025000e-03

Joint ci ratio: 1.290628e-01	ci left: 6.591193e-03	ci right 7.507925e-03	k: 915	n:130000
Cons ci ratio: 1.968592e-02	ci left: 2.314170e-01	ci right 2.360256e-01	k: 30383	n:130000
KS ci ratio: 1.302131e-01	ci left: 6.472083e-03	ci right 7.380890e-03	k: 899	n:130000
GLS   130000 perm   33 sec   (3884 perm/sec)   p_kst 6.915385e-03   p_cons 2.337154e-01   p_joint 7.038462e-03

Joint ci ratio: 9.774751e-02	ci left: 1.080168e-02	ci right 1.191869e-02	k: 1589	n:140000
Cons ci ratio: 1.896727e-02	ci left: 2.315493e-01	ci right 2.359903e-01	k: 32727	n:140000
KS ci ratio: 1.256876e-01	ci left: 6.466130e-03	ci right 7.340194e-03	k: 965	n:140000
GLS   140000 perm   37 sec   (3816 perm/sec)   p_kst 6.892857e-03   p_cons 2.337643e-01   p_joint 1.135000e-02

Joint ci ratio: 7.598534e-02	ci left: 1.677047e-02	ci right 1.810161e-02	k: 2614	n:150000
Cons ci ratio: 1.831040e-02	ci left: 2.318925e-01	ci right 2.361844e-01	k: 35105	n:150000
KS ci ratio: 1.214849e-01	ci left: 6.474377e-03	ci right 7.318186e-03	k: 1033	n:150000
GLS   150000 perm   40 sec   (3749 perm/sec)   p_kst 6.886667e-03   p_cons 2.340333e-01   p_joint 1.742667e-02

Joint ci ratio: 8.324761e-02	ci left: 1.309939e-02	ci right 1.424333e-02	k: 2186	n:160000
Cons ci ratio: 1.772168e-02	ci left: 2.321079e-01	ci right 2.362642e-01	k: 37469	n:160000
KS ci ratio: 1.175165e-01	ci left: 6.500220e-03	ci right 7.317801e-03	k: 1104	n:160000
GLS   160000 perm   43 sec   (3690 perm/sec)   p_kst 6.900000e-03   p_cons 2.341813e-01   p_joint 1.366250e-02

Joint ci ratio: 8.095101e-02	ci left: 1.305479e-02	ci right 1.416189e-02	k: 2312	n:170000
Cons ci ratio: 1.718266e-02	ci left: 2.323761e-01	ci right 2.364094e-01	k: 39846	n:170000
KS ci ratio: 1.141087e-01	ci left: 6.500555e-03	ci right 7.292872e-03	k: 1171	n:170000
GLS   170000 perm   47 sec   (3633 perm/sec)   p_kst 6.888235e-03   p_cons 2.343882e-01   p_joint 1.360000e-02

Joint ci ratio: 7.837970e-02	ci left: 1.316806e-02	ci right 1.424768e-02	k: 2466	n:180000
Cons ci ratio: 1.670732e-02	ci left: 2.322451e-01	ci right 2.361635e-01	k: 42156	n:180000
KS ci ratio: 1.104439e-01	ci left: 6.565990e-03	ci right 7.338906e-03	k: 1250	n:180000
GLS   180000 perm   50 sec   (3578 perm/sec)   p_kst 6.944444e-03   p_cons 2.342000e-01   p_joint 1.370000e-02

Joint ci ratio: 7.631976e-02	ci left: 1.317179e-02	ci right 1.422207e-02	k: 2601	n:190000
Cons ci ratio: 1.625147e-02	ci left: 2.325229e-01	ci right 2.363379e-01	k: 44541	n:190000
KS ci ratio: 1.078897e-01	ci left: 6.527572e-03	ci right 7.277066e-03	k: 1310	n:190000
GLS   190000 perm   54 sec   (3525 perm/sec)   p_kst 6.894737e-03   p_cons 2.344263e-01   p_joint 1.368947e-02

Joint ci ratio: 7.440035e-02	ci left: 1.318039e-02	ci right 1.420378e-02	k: 2737	n:200000
Cons ci ratio: 1.582946e-02	ci left: 2.328091e-01	ci right 2.365286e-01	k: 46933	n:200000
KS ci ratio: 1.054662e-01	ci left: 6.498050e-03	ci right 7.226354e-03	k: 1371	n:200000
GLS   200000 perm   58 sec   (3473 perm/sec)   p_kst 6.855000e-03   p_cons 2.346650e-01   p_joint 1.368500e-02

Joint ci ratio: 7.812173e-02	ci left: 1.138454e-02	ci right 1.231472e-02	k: 2487	n:210000
Cons ci ratio: 1.546781e-02	ci left: 2.323947e-01	ci right 2.360221e-01	k: 49183	n:210000
KS ci ratio: 1.018828e-01	ci left: 6.643212e-03	ci right 7.360974e-03	k: 1469	n:210000
GLS   210000 perm   61 sec   (3424 perm/sec)   p_kst 6.995238e-03   p_cons 2.342048e-01   p_joint 1.184286e-02

Joint ci ratio: 6.927539e-02	ci left: 1.384823e-02	ci right 1.484644e-02	k: 3155	n:220000
Cons ci ratio: 1.509976e-02	ci left: 2.327308e-01	ci right 2.362762e-01	k: 51590	n:220000
KS ci ratio: 9.976900e-02	ci left: 6.620386e-03	ci right 7.319972e-03	k: 1532	n:220000
GLS   220000 perm   65 sec   (3373 perm/sec)   p_kst 6.963636e-03   p_cons 2.345000e-01   p_joint 1.434091e-02

Outputting figure to mutsig2_images.part000000000071/GLS.4_2082_220000_0.0069636_0.2345_0.014341.png
                gene_name: GLS
               theta_stop: 0.100 
                    nperm: 220000 
                     p_ks: 0.0070 
        ci_ks_bounds_left: 0.0066 
       ci_ks_bounds_right: 0.0073 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.014 
     ci_joint_bounds_left: 0.014 
    ci_joint_bounds_right: 0.015 

Current progress: 37 percent done.
GLUD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.597292e-02	ci left: 6.857695e-01	ci right 7.039168e-01	k: 6949	n:10000
KS ci ratio: 1.398082e-02	ci left: 8.808366e-01	ci right 8.933369e-01	k: 8872	n:10000
GLUD1   10000 perm   2 sec   (5259 perm/sec)   p_kst 8.872000e-01   p_cons 6.949000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000071/GLUD1.4_1729_10000_0.8872_0.6949_1.png
                gene_name: GLUD1
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 39 percent done.
GLUL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.630407e-02	ci left: 6.803271e-01	ci right 6.985625e-01	k: 6895	n:10000
KS ci ratio: 1.687406e-02	ci left: 8.364327e-01	ci right 8.507666e-01	k: 8437	n:10000
GLUL   10000 perm   2 sec   (5765 perm/sec)   p_kst 8.437000e-01   p_cons 6.895000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000071/GLUL.4_1146_10000_0.8437_0.6895_1.png
                gene_name: GLUL
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 41 percent done.
GKN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.920119e-01	ci left: 1.511403e-02	ci right 2.037228e-02	k: 176	n:10000
Cons ci ratio: 2.514556e-03	ci left: 9.945571e-01	ci right 9.971408e-01	k: 9960	n:10000
KS ci ratio: 6.346671e-01	ci left: 2.606439e-03	ci right 5.096391e-03	k: 37	n:10000
GKN2   10000 perm   1 sec   (6834 perm/sec)   p_kst 3.700000e-03   p_cons 9.960000e-01   p_joint 1.760000e-02

Joint ci ratio: 3.313245e-01	ci left: 5.799905e-03	ci right 8.146877e-03	k: 138	n:20000
Cons ci ratio: 1.852956e-03	ci left: 9.945818e-01	ci right 9.964696e-01	k: 19912	n:20000
KS ci ratio: 4.930829e-01	ci left: 2.377553e-03	ci right 3.972323e-03	k: 62	n:20000
GKN2   20000 perm   3 sec   (5949 perm/sec)   p_kst 3.100000e-03   p_cons 9.956000e-01   p_joint 6.900000e-03

Joint ci ratio: 3.484815e-01	ci left: 3.469451e-03	ci right 4.962414e-03	k: 125	n:30000
Cons ci ratio: 1.571646e-03	ci left: 9.943873e-01	ci right 9.959811e-01	k: 29857	n:30000
KS ci ratio: 4.148955e-01	ci left: 2.353264e-03	ci right 3.612718e-03	k: 88	n:30000
GKN2   30000 perm   5 sec   (5601 perm/sec)   p_kst 2.933333e-03   p_cons 9.952333e-01   p_joint 4.166667e-03

Joint ci ratio: 2.588642e-01	ci left: 4.962423e-03	ci right 6.460707e-03	k: 227	n:40000
Cons ci ratio: 1.368219e-03	ci left: 9.944462e-01	ci right 9.958304e-01	k: 39807	n:40000
KS ci ratio: 3.445755e-01	ci left: 2.670359e-03	ci right 3.803659e-03	k: 128	n:40000
GKN2   40000 perm   7 sec   (5390 perm/sec)   p_kst 3.200000e-03   p_cons 9.951750e-01   p_joint 5.675000e-03

Joint ci ratio: 2.303197e-01	ci left: 5.096658e-03	ci right 6.441699e-03	k: 287	n:50000
Cons ci ratio: 1.235146e-03	ci left: 9.944270e-01	ci right 9.956744e-01	k: 49754	n:50000
KS ci ratio: 3.028287e-01	ci left: 2.834815e-03	ci right 3.864181e-03	k: 166	n:50000
GKN2   50000 perm   10 sec   (5224 perm/sec)   p_kst 3.320000e-03   p_cons 9.950800e-01   p_joint 5.740000e-03

Joint ci ratio: 2.188918e-01	ci left: 4.734727e-03	ci right 5.913900e-03	k: 318	n:60000
Cons ci ratio: 1.145744e-03	ci left: 9.943147e-01	ci right 9.954700e-01	k: 59695	n:60000
KS ci ratio: 2.817113e-01	ci left: 2.763933e-03	ci right 3.685156e-03	k: 192	n:60000
GKN2   60000 perm   12 sec   (5082 perm/sec)   p_kst 3.200000e-03   p_cons 9.949167e-01   p_joint 5.300000e-03

Joint ci ratio: 2.099129e-01	ci left: 4.436791e-03	ci right 5.490602e-03	k: 346	n:70000
Cons ci ratio: 1.057769e-03	ci left: 9.943892e-01	ci right 9.954549e-01	k: 69646	n:70000
KS ci ratio: 2.569319e-01	ci left: 2.888707e-03	ci right 3.753274e-03	k: 231	n:70000
GKN2   70000 perm   14 sec   (4950 perm/sec)   p_kst 3.300000e-03   p_cons 9.949429e-01   p_joint 4.942857e-03

Joint ci ratio: 1.926254e-01	ci left: 4.653861e-03	ci right 5.657541e-03	k: 411	n:80000
Cons ci ratio: 9.774794e-04	ci left: 9.945521e-01	ci right 9.955364e-01	k: 79605	n:80000
KS ci ratio: 2.399492e-01	ci left: 2.926193e-03	ci right 3.735488e-03	k: 265	n:80000
GKN2   80000 perm   17 sec   (4834 perm/sec)   p_kst 3.312500e-03   p_cons 9.950625e-01   p_joint 5.137500e-03

Joint ci ratio: 1.803424e-01	ci left: 4.751172e-03	ci right 5.703369e-03	k: 469	n:90000
Cons ci ratio: 9.200191e-04	ci left: 9.945987e-01	ci right 9.955245e-01	k: 89557	n:90000
KS ci ratio: 2.237090e-01	ci left: 3.019736e-03	ci right 3.790597e-03	k: 305	n:90000
GKN2   90000 perm   19 sec   (4725 perm/sec)   p_kst 3.388889e-03   p_cons 9.950778e-01   p_joint 5.211111e-03

Joint ci ratio: 1.679207e-01	ci left: 4.964753e-03	ci right 5.884292e-03	k: 541	n:100000
Cons ci ratio: 8.769482e-04	ci left: 9.945745e-01	ci right 9.954564e-01	k: 99503	n:100000
KS ci ratio: 2.157597e-01	ci left: 2.935092e-03	ci right 3.654194e-03	k: 328	n:100000
GKN2   100000 perm   22 sec   (4621 perm/sec)   p_kst 3.280000e-03   p_cons 9.950300e-01   p_joint 5.410000e-03

Joint ci ratio: 1.594620e-01	ci left: 5.027826e-03	ci right 5.907648e-03	k: 600	n:110000
Cons ci ratio: 8.408814e-04	ci left: 9.945369e-01	ci right 9.953821e-01	k: 109447	n:110000
KS ci ratio: 2.056904e-01	ci left: 2.952444e-03	ci right 3.637794e-03	k: 361	n:110000
GKN2   110000 perm   24 sec   (4527 perm/sec)   p_kst 3.281818e-03   p_cons 9.949727e-01   p_joint 5.454545e-03

Joint ci ratio: 1.546587e-01	ci left: 4.913040e-03	ci right 5.744475e-03	k: 638	n:120000
Cons ci ratio: 8.001399e-04	ci left: 9.946192e-01	ci right 9.954232e-01	k: 119404	n:120000
KS ci ratio: 2.005078e-01	ci left: 2.856674e-03	ci right 3.501039e-03	k: 380	n:120000
GKN2   120000 perm   27 sec   (4444 perm/sec)   p_kst 3.166667e-03   p_cons 9.950333e-01   p_joint 5.316667e-03

Joint ci ratio: 1.509383e-01	ci left: 4.771829e-03	ci right 5.558185e-03	k: 670	n:130000
Cons ci ratio: 7.677048e-04	ci left: 9.946494e-01	ci right 9.954206e-01	k: 129356	n:130000
KS ci ratio: 1.916544e-01	ci left: 2.900269e-03	ci right 3.522217e-03	k: 416	n:130000
GKN2   130000 perm   30 sec   (4359 perm/sec)   p_kst 3.200000e-03   p_cons 9.950462e-01   p_joint 5.153846e-03

Joint ci ratio: 1.495178e-01	ci left: 4.520306e-03	ci right 5.257573e-03	k: 683	n:140000
Cons ci ratio: 7.415891e-04	ci left: 9.946387e-01	ci right 9.953834e-01	k: 139303	n:140000
KS ci ratio: 1.855296e-01	ci left: 2.883664e-03	ci right 3.480064e-03	k: 444	n:140000
GKN2   140000 perm   33 sec   (4255 perm/sec)   p_kst 3.171429e-03   p_cons 9.950214e-01   p_joint 4.878571e-03

Joint ci ratio: 1.455353e-01	ci left: 4.462925e-03	ci right 5.169758e-03	k: 721	n:150000
Cons ci ratio: 7.169939e-04	ci left: 9.946438e-01	ci right 9.953635e-01	k: 149252	n:150000
KS ci ratio: 1.778935e-01	ci left: 2.939605e-03	ci right 3.519860e-03	k: 483	n:150000
GKN2   150000 perm   36 sec   (4179 perm/sec)   p_kst 3.220000e-03   p_cons 9.950133e-01   p_joint 4.806667e-03

Joint ci ratio: 1.412955e-01	ci left: 4.449123e-03	ci right 5.131512e-03	k: 765	n:160000
Cons ci ratio: 6.946927e-04	ci left: 9.946486e-01	ci right 9.953458e-01	k: 159201	n:160000
KS ci ratio: 1.724571e-01	ci left: 2.941135e-03	ci right 3.502105e-03	k: 514	n:160000
GKN2   160000 perm   39 sec   (4088 perm/sec)   p_kst 3.212500e-03   p_cons 9.950062e-01   p_joint 4.781250e-03

Joint ci ratio: 1.353232e-01	ci left: 4.579273e-03	ci right 5.249547e-03	k: 834	n:170000
Cons ci ratio: 6.795072e-04	ci left: 9.945742e-01	ci right 9.952558e-01	k: 169137	n:170000
KS ci ratio: 1.671835e-01	ci left: 2.953997e-03	ci right 3.498456e-03	k: 547	n:170000
GKN2   170000 perm   43 sec   (3997 perm/sec)   p_kst 3.217647e-03   p_cons 9.949235e-01   p_joint 4.905882e-03

Joint ci ratio: 1.309991e-01	ci left: 4.625624e-03	ci right 5.279365e-03	k: 890	n:180000
Cons ci ratio: 6.582469e-04	ci left: 9.946174e-01	ci right 9.952776e-01	k: 179092	n:180000
KS ci ratio: 1.615312e-01	ci left: 2.997648e-03	ci right 3.529660e-03	k: 586	n:180000
GKN2   180000 perm   46 sec   (3931 perm/sec)   p_kst 3.255556e-03   p_cons 9.949556e-01   p_joint 4.944444e-03

Joint ci ratio: 1.240716e-01	ci left: 4.901938e-03	ci right 5.555403e-03	k: 992	n:190000
Cons ci ratio: 6.415293e-04	ci left: 9.946128e-01	ci right 9.952561e-01	k: 189039	n:190000
KS ci ratio: 1.579421e-01	ci left: 2.976300e-03	ci right 3.491673e-03	k: 613	n:190000
GKN2   190000 perm   49 sec   (3865 perm/sec)   p_kst 3.226316e-03   p_cons 9.949421e-01   p_joint 5.221053e-03

Joint ci ratio: 1.260812e-01	ci left: 4.506632e-03	ci right 5.117857e-03	k: 961	n:200000
Cons ci ratio: 6.229133e-04	ci left: 9.946605e-01	ci right 9.952850e-01	k: 198996	n:200000
KS ci ratio: 1.539807e-01	ci left: 2.981241e-03	ci right 3.483328e-03	k: 645	n:200000
GKN2   200000 perm   53 sec   (3803 perm/sec)   p_kst 3.225000e-03   p_cons 9.949800e-01   p_joint 4.805000e-03

Joint ci ratio: 1.234795e-01	ci left: 4.481171e-03	ci right 5.075483e-03	k: 1002	n:210000
Cons ci ratio: 6.081185e-04	ci left: 9.946645e-01	ci right 9.952741e-01	k: 208945	n:210000
KS ci ratio: 1.497502e-01	ci left: 3.008776e-03	ci right 3.500331e-03	k: 682	n:210000
GKN2   210000 perm   56 sec   (3744 perm/sec)   p_kst 3.247619e-03   p_cons 9.949762e-01   p_joint 4.771429e-03

Joint ci ratio: 1.201112e-01	ci left: 4.528686e-03	ci right 5.111752e-03	k: 1059	n:220000
Cons ci ratio: 5.932498e-04	ci left: 9.946870e-01	ci right 9.952816e-01	k: 218898	n:220000
KS ci ratio: 1.456474e-01	ci left: 3.042740e-03	ci right 3.525039e-03	k: 721	n:220000
GKN2   220000 perm   60 sec   (3682 perm/sec)   p_kst 3.277273e-03   p_cons 9.949909e-01   p_joint 4.813636e-03

Joint ci ratio: 1.168991e-01	ci left: 4.580712e-03	ci right 5.153615e-03	k: 1118	n:230000
Cons ci ratio: 5.806811e-04	ci left: 9.946853e-01	ci right 9.952673e-01	k: 228846	n:230000
KS ci ratio: 1.415846e-01	ci left: 3.086499e-03	ci right 3.560936e-03	k: 763	n:230000
GKN2   230000 perm   63 sec   (3629 perm/sec)   p_kst 3.317391e-03   p_cons 9.949826e-01   p_joint 4.860870e-03

Joint ci ratio: 1.120358e-01	ci left: 4.790571e-03	ci right 5.363149e-03	k: 1217	n:240000
Cons ci ratio: 5.684036e-04	ci left: 9.946925e-01	ci right 9.952621e-01	k: 238796	n:240000
KS ci ratio: 1.382748e-01	ci left: 3.106667e-03	ci right 3.572121e-03	k: 800	n:240000
GKN2   240000 perm   68 sec   (3550 perm/sec)   p_kst 3.333333e-03   p_cons 9.949833e-01   p_joint 5.070833e-03

Joint ci ratio: 1.100669e-01	ci left: 4.770056e-03	ci right 5.329513e-03	k: 1261	n:250000
Cons ci ratio: 5.555338e-04	ci left: 9.947239e-01	ci right 9.952805e-01	k: 248752	n:250000
KS ci ratio: 1.360034e-01	ci left: 3.086693e-03	ci right 3.540943e-03	k: 827	n:250000
GKN2   250000 perm   72 sec   (3485 perm/sec)   p_kst 3.308000e-03   p_cons 9.950080e-01   p_joint 5.044000e-03

Joint ci ratio: 1.095554e-01	ci left: 4.631460e-03	ci right 5.171975e-03	k: 1273	n:260000
Cons ci ratio: 5.445436e-04	ci left: 9.947332e-01	ci right 9.952787e-01	k: 258703	n:260000
KS ci ratio: 1.326777e-01	ci left: 3.124088e-03	ci right 3.571712e-03	k: 869	n:260000
GKN2   260000 perm   76 sec   (3435 perm/sec)   p_kst 3.342308e-03   p_cons 9.950115e-01   p_joint 4.896154e-03

Joint ci ratio: 1.036785e-01	ci left: 4.993513e-03	ci right 5.543115e-03	k: 1421	n:270000
Cons ci ratio: 5.602607e-04	ci left: 9.942328e-01	ci right 9.947935e-01	k: 268520	n:270000
KS ci ratio: 1.300144e-01	ci left: 3.137334e-03	ci right 3.577137e-03	k: 905	n:270000
GKN2   270000 perm   80 sec   (3387 perm/sec)   p_kst 3.351852e-03   p_cons 9.945185e-01   p_joint 5.262963e-03

Joint ci ratio: 1.019030e-01	ci left: 4.989153e-03	ci right 5.528308e-03	k: 1471	n:280000
Cons ci ratio: 5.501920e-04	ci left: 9.942374e-01	ci right 9.947880e-01	k: 278465	n:280000
KS ci ratio: 1.277777e-01	ci left: 3.135887e-03	ci right 3.567351e-03	k: 937	n:280000
GKN2   280000 perm   84 sec   (3342 perm/sec)   p_kst 3.346429e-03   p_cons 9.945179e-01   p_joint 5.253571e-03

Joint ci ratio: 9.847453e-02	ci left: 5.166772e-03	ci right 5.705253e-03	k: 1575	n:290000
Cons ci ratio: 5.406473e-04	ci left: 9.942418e-01	ci right 9.947828e-01	k: 288410	n:290000
KS ci ratio: 1.253290e-01	ci left: 3.151302e-03	ci right 3.575960e-03	k: 974	n:290000
GKN2   290000 perm   88 sec   (3299 perm/sec)   p_kst 3.358621e-03   p_cons 9.945172e-01   p_joint 5.431034e-03

Joint ci ratio: 9.832683e-02	ci left: 5.010783e-03	ci right 5.532177e-03	k: 1580	n:300000
Cons ci ratio: 5.320695e-04	ci left: 9.942357e-01	ci right 9.947680e-01	k: 298352	n:300000
KS ci ratio: 1.228334e-01	ci left: 3.175456e-03	ci right 3.594228e-03	k: 1014	n:300000
GKN2   300000 perm   92 sec   (3255 perm/sec)   p_kst 3.380000e-03   p_cons 9.945067e-01   p_joint 5.266667e-03

Joint ci ratio: 9.506613e-02	ci left: 5.195427e-03	ci right 5.717109e-03	k: 1690	n:310000
Cons ci ratio: 5.223406e-04	ci left: 9.942631e-01	ci right 9.947857e-01	k: 308304	n:310000
KS ci ratio: 1.210001e-01	ci left: 3.169971e-03	ci right 3.581334e-03	k: 1045	n:310000
GKN2   310000 perm   96 sec   (3213 perm/sec)   p_kst 3.370968e-03   p_cons 9.945290e-01   p_joint 5.451613e-03

Joint ci ratio: 9.342237e-02	ci left: 5.216153e-03	ci right 5.730365e-03	k: 1750	n:320000
Cons ci ratio: 5.147423e-04	ci left: 9.942536e-01	ci right 9.947686e-01	k: 318245	n:320000
KS ci ratio: 1.184218e-01	ci left: 3.210359e-03	ci right 3.617466e-03	k: 1091	n:320000
GKN2   320000 perm   101 sec   (3170 perm/sec)   p_kst 3.409375e-03   p_cons 9.945156e-01   p_joint 5.468750e-03

Joint ci ratio: 9.181005e-02	ci left: 5.241618e-03	ci right 5.748943e-03	k: 1812	n:330000
Cons ci ratio: 5.064785e-04	ci left: 9.942666e-01	ci right 9.947732e-01	k: 328193	n:330000
KS ci ratio: 1.164647e-01	ci left: 3.221904e-03	ci right 3.623258e-03	k: 1128	n:330000
GKN2   330000 perm   106 sec   (3126 perm/sec)   p_kst 3.418182e-03   p_cons 9.945242e-01   p_joint 5.490909e-03

Joint ci ratio: 9.061924e-02	ci left: 5.225407e-03	ci right 5.724255e-03	k: 1860	n:340000
Cons ci ratio: 4.995417e-04	ci left: 9.942577e-01	ci right 9.947573e-01	k: 338134	n:340000
KS ci ratio: 1.147002e-01	ci left: 3.227108e-03	ci right 3.622607e-03	k: 1163	n:340000
GKN2   340000 perm   110 sec   (3084 perm/sec)   p_kst 3.420588e-03   p_cons 9.945118e-01   p_joint 5.470588e-03

Joint ci ratio: 8.940298e-02	ci left: 5.218543e-03	ci right 5.709700e-03	k: 1911	n:350000
Cons ci ratio: 4.948064e-04	ci left: 9.942056e-01	ci right 9.947004e-01	k: 348060	n:350000
KS ci ratio: 1.131557e-01	ci left: 3.223728e-03	ci right 3.613137e-03	k: 1195	n:350000
GKN2   350000 perm   115 sec   (3045 perm/sec)   p_kst 3.414286e-03   p_cons 9.944571e-01   p_joint 5.460000e-03

Joint ci ratio: 8.848404e-02	ci left: 5.182219e-03	ci right 5.664684e-03	k: 1951	n:360000
Cons ci ratio: 4.877067e-04	ci left: 9.942133e-01	ci right 9.947010e-01	k: 358006	n:360000
KS ci ratio: 1.120388e-01	ci left: 3.198966e-03	ci right 3.581318e-03	k: 1219	n:360000
GKN2   360000 perm   120 sec   (3006 perm/sec)   p_kst 3.386111e-03   p_cons 9.944611e-01   p_joint 5.419444e-03

Joint ci ratio: 8.897297e-02	ci left: 4.986639e-03	ci right 5.453594e-03	k: 1930	n:370000
Cons ci ratio: 4.805497e-04	ci left: 9.942288e-01	ci right 9.947093e-01	k: 367955	n:370000
KS ci ratio: 1.107312e-01	ci left: 3.188702e-03	ci right 3.565088e-03	k: 1248	n:370000
GKN2   370000 perm   125 sec   (2967 perm/sec)   p_kst 3.372973e-03   p_cons 9.944730e-01   p_joint 5.216216e-03

Joint ci ratio: 8.799965e-02	ci left: 4.966063e-03	ci right 5.425742e-03	k: 1973	n:380000
Cons ci ratio: 4.740374e-04	ci left: 9.942355e-01	ci right 9.947095e-01	k: 377901	n:380000
KS ci ratio: 1.096406e-01	ci left: 3.168763e-03	ci right 3.538874e-03	k: 1273	n:380000
GKN2   380000 perm   130 sec   (2930 perm/sec)   p_kst 3.350000e-03   p_cons 9.944763e-01   p_joint 5.192105e-03

Joint ci ratio: 8.658420e-02	ci left: 5.001760e-03	ci right 5.456920e-03	k: 2038	n:390000
Cons ci ratio: 4.681102e-04	ci left: 9.942341e-01	ci right 9.947021e-01	k: 387844	n:390000
KS ci ratio: 1.078346e-01	ci left: 3.194773e-03	ci right 3.561385e-03	k: 1316	n:390000
GKN2   390000 perm   135 sec   (2893 perm/sec)   p_kst 3.374359e-03   p_cons 9.944718e-01   p_joint 5.225641e-03

Joint ci ratio: 8.564507e-02	ci left: 4.986792e-03	ci right 5.435421e-03	k: 2083	n:400000
Cons ci ratio: 4.615588e-04	ci left: 9.942532e-01	ci right 9.947146e-01	k: 397795	n:400000
KS ci ratio: 1.065086e-01	ci left: 3.195192e-03	ci right 3.557061e-03	k: 1349	n:400000
GKN2   400000 perm   140 sec   (2859 perm/sec)   p_kst 3.372500e-03   p_cons 9.944875e-01   p_joint 5.207500e-03

Joint ci ratio: 8.469587e-02	ci left: 4.977354e-03	ci right 5.419927e-03	k: 2130	n:410000
Cons ci ratio: 4.564879e-04	ci left: 9.942415e-01	ci right 9.946978e-01	k: 407734	n:410000
KS ci ratio: 1.053450e-01	ci left: 3.188492e-03	ci right 3.545413e-03	k: 1379	n:410000
GKN2   410000 perm   145 sec   (2824 perm/sec)   p_kst 3.363415e-03   p_cons 9.944732e-01   p_joint 5.195122e-03

Joint ci ratio: 8.458154e-02	ci left: 4.872818e-03	ci right 5.305481e-03	k: 2136	n:420000
Cons ci ratio: 4.506015e-04	ci left: 9.942547e-01	ci right 9.947051e-01	k: 417683	n:420000
KS ci ratio: 1.038499e-01	ci left: 3.205324e-03	ci right 3.558725e-03	k: 1419	n:420000
GKN2   420000 perm   151 sec   (2791 perm/sec)   p_kst 3.378571e-03   p_cons 9.944833e-01   p_joint 5.085714e-03

Joint ci ratio: 8.355160e-02	ci left: 4.880162e-03	ci right 5.307944e-03	k: 2189	n:430000
Cons ci ratio: 4.445578e-04	ci left: 9.942768e-01	ci right 9.947212e-01	k: 427636	n:430000
KS ci ratio: 1.026285e-01	ci left: 3.207809e-03	ci right 3.557075e-03	k: 1453	n:430000
GKN2   430000 perm   156 sec   (2758 perm/sec)   p_kst 3.379070e-03   p_cons 9.945023e-01   p_joint 5.090698e-03

Joint ci ratio: 8.272536e-02	ci left: 4.867169e-03	ci right 5.289389e-03	k: 2233	n:440000
Cons ci ratio: 4.398421e-04	ci left: 9.942701e-01	ci right 9.947097e-01	k: 437577	n:440000
KS ci ratio: 1.017239e-01	ci left: 3.192484e-03	ci right 3.536834e-03	k: 1479	n:440000
GKN2   440000 perm   161 sec   (2727 perm/sec)   p_kst 3.361364e-03   p_cons 9.944932e-01   p_joint 5.075000e-03

Joint ci ratio: 8.183294e-02	ci left: 4.865658e-03	ci right 5.282976e-03	k: 2282	n:450000
Cons ci ratio: 4.362407e-04	ci left: 9.942388e-01	ci right 9.946748e-01	k: 447507	n:450000
KS ci ratio: 1.006085e-01	ci left: 3.193018e-03	ci right 3.533426e-03	k: 1512	n:450000
GKN2   450000 perm   167 sec   (2696 perm/sec)   p_kst 3.360000e-03   p_cons 9.944600e-01   p_joint 5.071111e-03

Joint ci ratio: 8.089909e-02	ci left: 4.872756e-03	ci right 5.285689e-03	k: 2335	n:460000
Cons ci ratio: 4.314370e-04	ci left: 9.942422e-01	ci right 9.946733e-01	k: 457452	n:460000
KS ci ratio: 9.943229e-02	ci left: 3.199908e-03	ci right 3.536830e-03	k: 1548	n:460000
GKN2   460000 perm   173 sec   (2666 perm/sec)   p_kst 3.365217e-03   p_cons 9.944609e-01   p_joint 5.076087e-03

Outputting figure to mutsig2_images.part000000000071/GKN2.3_579_460000_0.0033652_0.99446_0.0050761.png
                gene_name: GKN2
               theta_stop: 0.099 
                    nperm: 460000 
                     p_ks: 0.0034 
        ci_ks_bounds_left: 0.0032 
       ci_ks_bounds_right: 0.0035 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.0051 
     ci_joint_bounds_left: 0.0049 
    ci_joint_bounds_right: 0.0053 

Current progress: 43 percent done.
GLDN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.048442e-02	ci left: 6.135171e-01	ci right 6.326112e-01	k: 6231	n:10000
Cons ci ratio: 5.027449e-02	ci left: 3.684831e-01	ci right 3.875880e-01	k: 3780	n:10000
KS ci ratio: 3.891299e-02	ci left: 4.937506e-01	ci right 5.134473e-01	k: 5036	n:10000
GLDN   10000 perm   2 sec   (5920 perm/sec)   p_kst 5.036000e-01   p_cons 3.780000e-01   p_joint 6.231000e-01

Outputting figure to mutsig2_images.part000000000071/GLDN.3_1696_10000_0.5036_0.378_0.6231.png
                gene_name: GLDN
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 46 percent done.
GLG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.402527e-02	ci left: 2.108283e-01	ci right 2.271357e-01	k: 2189	n:10000
Cons ci ratio: 9.522390e-02	ci left: 1.379571e-01	ci right 1.518505e-01	k: 1448	n:10000
KS ci ratio: 8.695309e-02	ci left: 1.615057e-01	ci right 1.762877e-01	k: 1688	n:10000
GLG1   10000 perm   2 sec   (4651 perm/sec)   p_kst 1.688000e-01   p_cons 1.448000e-01   p_joint 2.189000e-01

Outputting figure to mutsig2_images.part000000000071/GLG1.3_3724_10000_0.1688_0.1448_0.2189.png
                gene_name: GLG1
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 48 percent done.
GLI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.473782e-02	ci left: 3.296208e-01	ci right 3.482731e-01	k: 3389	n:10000
Cons ci ratio: 3.067940e-02	ci left: 6.105032e-01	ci right 6.296268e-01	k: 6201	n:10000
KS ci ratio: 7.822696e-02	ci left: 1.927894e-01	ci right 2.085854e-01	k: 2006	n:10000
GLI1   10000 perm   2 sec   (4824 perm/sec)   p_kst 2.006000e-01   p_cons 6.201000e-01   p_joint 3.389000e-01

Outputting figure to mutsig2_images.part000000000071/GLI1.3_3365_10000_0.2006_0.6201_0.3389.png
                gene_name: GLI1
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 50 percent done.
GLRA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.828014e-02	ci left: 8.137498e-01	ci right 8.288626e-01	k: 8214	n:10000
KS ci ratio: 4.965508e-03	ci left: 9.816675e-01	ci right 9.866446e-01	k: 9843	n:10000
GLRA3   10000 perm   2 sec   (6100 perm/sec)   p_kst 9.843000e-01   p_cons 8.214000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000071/GLRA3.3_1435_10000_0.9843_0.8214_1.png
                gene_name: GLRA3
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 52 percent done.
GLRB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.548344e-02	ci left: 2.043197e-01	ci right 2.204482e-01	k: 2123	n:10000
Cons ci ratio: 8.205725e-02	ci left: 1.781208e-01	ci right 1.934627e-01	k: 1857	n:10000
KS ci ratio: 9.687168e-02	ci left: 1.338424e-01	ci right 1.475676e-01	k: 1406	n:10000
GLRB   10000 perm   2 sec   (6104 perm/sec)   p_kst 1.406000e-01   p_cons 1.857000e-01   p_joint 2.123000e-01

Outputting figure to mutsig2_images.part000000000071/GLRB.3_1530_10000_0.1406_0.1857_0.2123.png
                gene_name: GLRB
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 54 percent done.
GNA14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.805305e-02	ci left: 1.580679e-01	ci right 1.727275e-01	k: 1653	n:10000
Cons ci ratio: 1.696349e-02	ci left: 8.350072e-01	ci right 8.493928e-01	k: 8423	n:10000
KS ci ratio: 1.286084e-01	ci left: 7.950840e-02	ci right 9.053475e-02	k: 849	n:10000
GNA14   10000 perm   2 sec   (6329 perm/sec)   p_kst 8.490000e-02   p_cons 8.423000e-01   p_joint 1.653000e-01

Joint ci ratio: 6.226385e-02	ci left: 1.602253e-01	ci right 1.705721e-01	k: 3307	n:20000
Cons ci ratio: 1.195597e-02	ci left: 8.380352e-01	ci right 8.481648e-01	k: 16863	n:20000
KS ci ratio: 9.062170e-02	ci left: 8.166013e-02	ci right 8.946085e-02	k: 1710	n:20000
GNA14   20000 perm   4 sec   (5623 perm/sec)   p_kst 8.550000e-02   p_cons 8.431500e-01   p_joint 1.653500e-01

Outputting figure to mutsig2_images.part000000000071/GNA14.3_1096_20000_0.0855_0.84315_0.16535.png
                gene_name: GNA14
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.086 
        ci_ks_bounds_left: 0.082 
       ci_ks_bounds_right: 0.089 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 57 percent done.
GJC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.541488e-03	ci left: 9.900531e-01	ci right 9.936515e-01	k: 9920	n:10000
Cons ci ratio: 2.977477e-02	ci left: 6.245712e-01	ci right 6.435506e-01	k: 6341	n:10000
KS ci ratio: 3.125513e-02	ci left: 6.016648e-01	ci right 6.208704e-01	k: 6113	n:10000
GJC1   10000 perm   2 sec   (6302 perm/sec)   p_kst 6.113000e-01   p_cons 6.341000e-01   p_joint 9.920000e-01

Outputting figure to mutsig2_images.part000000000071/GJC1.2_1195_10000_0.6113_0.6341_0.992.png
                gene_name: GJC1
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 59 percent done.
GJD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.725614e-02	ci left: 8.303250e-01	ci right 8.448778e-01	k: 8377	n:10000
Cons ci ratio: 1.582507e-02	ci left: 8.529423e-01	ci right 8.666473e-01	k: 8599	n:10000
KS ci ratio: 2.429909e-02	ci left: 7.135091e-01	ci right 7.311612e-01	k: 7224	n:10000
GJD2   10000 perm   2 sec   (6263 perm/sec)   p_kst 7.224000e-01   p_cons 8.599000e-01   p_joint 8.377000e-01

Outputting figure to mutsig2_images.part000000000071/GJD2.2_974_10000_0.7224_0.8599_0.8377.png
                gene_name: GJD2
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 61 percent done.
GJD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.145032e-01	ci left: 9.886244e-02	ci right 1.109688e-01	k: 1048	n:10000
Cons ci ratio: 1.315918e-01	ci left: 7.611299e-02	ci right 8.693227e-02	k: 814	n:10000
KS ci ratio: 1.950272e-02	ci left: 7.936464e-01	ci right 8.093775e-01	k: 8016	n:10000
GJD4   10000 perm   2 sec   (6373 perm/sec)   p_kst 8.016000e-01   p_cons 8.140000e-02   p_joint 1.048000e-01

Joint ci ratio: 3.016315e-02	ci left: 4.508768e-01	ci right 4.647355e-01	k: 9156	n:20000
Cons ci ratio: 9.289637e-02	ci left: 7.793991e-02	ci right 8.558220e-02	k: 1634	n:20000
KS ci ratio: 1.395475e-02	ci left: 7.921655e-01	ci right 8.033478e-01	k: 15956	n:20000
GJD4   20000 perm   4 sec   (5628 perm/sec)   p_kst 7.978000e-01   p_cons 8.170000e-02   p_joint 4.578000e-01

Outputting figure to mutsig2_images.part000000000071/GJD4.2_1121_20000_0.7978_0.0817_0.4578.png
                gene_name: GJD4
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.082 
      ci_cons_bounds_left: 0.078 
     ci_cons_bounds_right: 0.086 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.46 

Current progress: 63 percent done.
GK5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.847911e-02	ci left: 8.104985e-01	ci right 8.257157e-01	k: 8182	n:10000
Cons ci ratio: 1.711640e-02	ci left: 8.325641e-01	ci right 8.470374e-01	k: 8399	n:10000
KS ci ratio: 3.683541e-02	ci left: 5.211612e-01	ci right 5.408207e-01	k: 5310	n:10000
GK5   10000 perm   2 sec   (6046 perm/sec)   p_kst 5.310000e-01   p_cons 8.399000e-01   p_joint 8.182000e-01

Outputting figure to mutsig2_images.part000000000071/GK5.2_1654_10000_0.531_0.8399_0.8182.png
                gene_name: GK5
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 65 percent done.
GKAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.889213e-02	ci left: 3.816178e-01	ci right 4.008456e-01	k: 3912	n:10000
Cons ci ratio: 2.125218e-01	ci left: 2.939568e-02	ci right 3.647982e-02	k: 328	n:10000
KS ci ratio: 3.666569e-02	ci left: 5.234634e-01	ci right 5.431172e-01	k: 5333	n:10000
GKAP1   10000 perm   2 sec   (6310 perm/sec)   p_kst 5.333000e-01   p_cons 3.280000e-02   p_joint 3.912000e-01

Joint ci ratio: 7.791074e-02	ci left: 1.079558e-01	ci right 1.167573e-01	k: 2246	n:20000
Cons ci ratio: 1.471848e-01	ci left: 3.172413e-02	ci right 3.681244e-02	k: 684	n:20000
KS ci ratio: 2.596742e-02	ci left: 5.256059e-01	ci right 5.394847e-01	k: 10651	n:20000
GKAP1   20000 perm   4 sec   (5646 perm/sec)   p_kst 5.325500e-01   p_cons 3.420000e-02   p_joint 1.123000e-01

Joint ci ratio: 4.407771e-02	ci left: 2.040140e-01	ci right 2.132425e-01	k: 6258	n:30000
Cons ci ratio: 1.012337e-01	ci left: 4.518536e-02	ci right 5.003607e-02	k: 1427	n:30000
KS ci ratio: 2.117087e-02	ci left: 5.276350e-01	ci right 5.389586e-01	k: 15999	n:30000
GKAP1   30000 perm   6 sec   (5369 perm/sec)   p_kst 5.333000e-01   p_cons 4.756667e-02   p_joint 2.086000e-01

Joint ci ratio: 7.422942e-02	ci left: 6.275063e-02	ci right 6.761273e-02	k: 2606	n:40000
Cons ci ratio: 8.750253e-02	ci left: 4.568071e-02	ci right 4.988525e-02	k: 1910	n:40000
KS ci ratio: 1.838912e-02	ci left: 5.269204e-01	ci right 5.367250e-01	k: 21273	n:40000
GKAP1   40000 perm   8 sec   (5197 perm/sec)   p_kst 5.318250e-01   p_cons 4.775000e-02   p_joint 6.515000e-02

Outputting figure to mutsig2_images.part000000000071/GKAP1.2_1145_40000_0.53182_0.04775_0.06515.png
                gene_name: GKAP1
               theta_stop: 0.088 
                    nperm: 40000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.048 
      ci_cons_bounds_left: 0.046 
     ci_cons_bounds_right: 0.050 
                  p_joint: 0.065 
     ci_joint_bounds_left: 0.063 
    ci_joint_bounds_right: 0.068 

Current progress: 67 percent done.
GLA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.733853e-02	ci left: 8.290021e-01	ci right 8.436014e-01	k: 8364	n:10000
Cons ci ratio: 1.822407e-02	ci left: 8.146643e-01	ci right 8.297475e-01	k: 8223	n:10000
KS ci ratio: 3.622611e-02	ci left: 5.294702e-01	ci right 5.491069e-01	k: 5393	n:10000
GLA   10000 perm   2 sec   (6583 perm/sec)   p_kst 5.393000e-01   p_cons 8.223000e-01   p_joint 8.364000e-01

Outputting figure to mutsig2_images.part000000000071/GLA.2_1318_10000_0.5393_0.8223_0.8364.png
                gene_name: GLA
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 70 percent done.
GLB1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.640851e-02	ci left: 4.066140e-01	ci right 4.260348e-01	k: 4163	n:10000
KS ci ratio: 6.325116e-02	ci left: 2.686408e-01	ci right 2.862890e-01	k: 2774	n:10000
GLB1L   10000 perm   2 sec   (5832 perm/sec)   p_kst 2.774000e-01   p_cons 4.163000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000071/GLB1L.2_2029_10000_0.2774_0.4163_1.png
                gene_name: GLB1L
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
GLI4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.355244e-02	ci left: 2.129985e-01	ci right 2.293642e-01	k: 2211	n:10000
Cons ci ratio: 6.703721e-02	ci left: 2.461830e-01	ci right 2.633601e-01	k: 2547	n:10000
KS ci ratio: 6.278129e-02	ci left: 2.716109e-01	ci right 2.893171e-01	k: 2804	n:10000
GLI4   10000 perm   2 sec   (6171 perm/sec)   p_kst 2.804000e-01   p_cons 2.547000e-01   p_joint 2.211000e-01

Outputting figure to mutsig2_images.part000000000071/GLI4.2_1143_10000_0.2804_0.2547_0.2211.png
                gene_name: GLI4
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 74 percent done.
GLIPR1L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.503267e-02	ci left: 2.577545e-01	ci right 2.751817e-01	k: 2664	n:10000
Cons ci ratio: 5.787322e-02	ci left: 3.053055e-01	ci right 3.236027e-01	k: 3144	n:10000
KS ci ratio: 6.430867e-02	ci left: 2.621082e-01	ci right 2.796255e-01	k: 2708	n:10000
GLIPR1L1   10000 perm   2 sec   (6549 perm/sec)   p_kst 2.708000e-01   p_cons 3.144000e-01   p_joint 2.664000e-01

Outputting figure to mutsig2_images.part000000000071/GLIPR1L1.2_722_10000_0.2708_0.3144_0.2664.png
                gene_name: GLIPR1L1
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 76 percent done.
GLIS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.165822e-02	ci left: 9.132737e-01	ci right 9.240809e-01	k: 9188	n:10000
KS ci ratio: 2.946119e-02	ci left: 6.294971e-01	ci right 6.484219e-01	k: 6390	n:10000
GLIS1   10000 perm   2 sec   (5974 perm/sec)   p_kst 6.390000e-01   p_cons 9.188000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000071/GLIS1.2_1895_10000_0.639_0.9188_1.png
                gene_name: GLIS1
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
GLIS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.655452e-03	ci left: 9.767421e-01	ci right 9.823736e-01	k: 9797	n:10000
Cons ci ratio: 4.498665e-02	ci left: 4.217637e-01	ci right 4.412762e-01	k: 4315	n:10000
KS ci ratio: 4.738645e-02	ci left: 3.965527e-01	ci right 4.159020e-01	k: 4062	n:10000
GLIS3   10000 perm   2 sec   (4481 perm/sec)   p_kst 4.062000e-01   p_cons 4.315000e-01   p_joint 9.797000e-01

Outputting figure to mutsig2_images.part000000000071/GLIS3.2_2833_10000_0.4062_0.4315_0.9797.png
                gene_name: GLIS3
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 80 percent done.
GLRA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.842833e-02	ci left: 6.458907e-01	ci right 6.646188e-01	k: 6553	n:10000
KS ci ratio: 3.464415e-02	ci left: 5.516076e-01	ci right 5.711566e-01	k: 5614	n:10000
GLRA1   10000 perm   2 sec   (6141 perm/sec)   p_kst 5.614000e-01   p_cons 6.553000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000071/GLRA1.2_1410_10000_0.5614_0.6553_1.png
                gene_name: GLRA1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
GLT25D1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.693422e-02	ci left: 1.981098e-01	ci right 2.140618e-01	k: 2060	n:10000
Cons ci ratio: 1.422220e-01	ci left: 6.555836e-02	ci right 7.569349e-02	k: 705	n:10000
KS ci ratio: 1.412697e-02	ci left: 8.786872e-01	ci right 8.912875e-01	k: 8851	n:10000
GLT25D1   10000 perm   2 sec   (5742 perm/sec)   p_kst 8.851000e-01   p_cons 7.050000e-02   p_joint 2.060000e-01

Joint ci ratio: 5.384246e-02	ci left: 2.038281e-01	ci right 2.151565e-01	k: 4189	n:20000
Cons ci ratio: 9.899308e-02	ci left: 6.909005e-02	ci right 7.633477e-02	k: 1453	n:20000
KS ci ratio: 1.000041e-02	ci left: 8.803451e-01	ci right 8.892427e-01	k: 17697	n:20000
GLT25D1   20000 perm   4 sec   (5057 perm/sec)   p_kst 8.848500e-01   p_cons 7.265000e-02   p_joint 2.094500e-01

Outputting figure to mutsig2_images.part000000000071/GLT25D1.2_1917_20000_0.88485_0.07265_0.20945.png
                gene_name: GLT25D1
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.073 
      ci_cons_bounds_left: 0.069 
     ci_cons_bounds_right: 0.076 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 85 percent done.
GLTSCR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.289034e-02	ci left: 2.709178e-01	ci right 2.886106e-01	k: 2797	n:10000
Cons ci ratio: 1.145642e-01	ci left: 9.876499e-02	ci right 1.108663e-01	k: 1047	n:10000
KS ci ratio: 2.679656e-02	ci left: 6.722668e-01	ci right 6.906274e-01	k: 6815	n:10000
GLTSCR2   10000 perm   2 sec   (6153 perm/sec)   p_kst 6.815000e-01   p_cons 1.047000e-01   p_joint 2.797000e-01

Joint ci ratio: 6.334539e-02	ci left: 1.555854e-01	ci right 1.658134e-01	k: 3213	n:20000
Cons ci ratio: 8.140165e-02	ci left: 9.965488e-02	ci right 1.081607e-01	k: 2077	n:20000
KS ci ratio: 1.908846e-02	ci left: 6.717755e-01	ci right 6.847727e-01	k: 13566	n:20000
GLTSCR2   20000 perm   4 sec   (5494 perm/sec)   p_kst 6.783000e-01   p_cons 1.038500e-01   p_joint 1.606500e-01

Outputting figure to mutsig2_images.part000000000071/GLTSCR2.2_1489_20000_0.6783_0.10385_0.16065.png
                gene_name: GLTSCR2
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.100 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 87 percent done.
GLYR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.262572e-02	ci left: 7.414922e-01	ci right 7.585620e-01	k: 7501	n:10000
Cons ci ratio: 5.141594e-02	ci left: 3.580403e-01	ci right 3.770370e-01	k: 3675	n:10000
KS ci ratio: 3.716778e-01	ci left: 8.958341e-03	ci right 1.313383e-02	k: 109	n:10000
GLYR1   10000 perm   2 sec   (6031 perm/sec)   p_kst 1.090000e-02   p_cons 3.675000e-01   p_joint 7.501000e-01

Joint ci ratio: 6.080502e-02	ci left: 1.667928e-01	ci right 1.773027e-01	k: 3440	n:20000
Cons ci ratio: 3.658031e-02	ci left: 3.580241e-01	ci right 3.714153e-01	k: 7294	n:20000
KS ci ratio: 2.786178e-01	ci left: 8.434855e-03	ci right 1.121045e-02	k: 195	n:20000
GLYR1   20000 perm   4 sec   (5400 perm/sec)   p_kst 9.750000e-03   p_cons 3.647000e-01   p_joint 1.720000e-01

Joint ci ratio: 7.239266e-02	ci left: 8.580112e-02	ci right 9.227872e-02	k: 2670	n:30000
Cons ci ratio: 2.979369e-02	ci left: 3.604127e-01	ci right 3.713466e-01	k: 10976	n:30000
KS ci ratio: 2.240543e-01	ci left: 8.968019e-03	ci right 1.126168e-02	k: 302	n:30000
GLYR1   30000 perm   6 sec   (5112 perm/sec)   p_kst 1.006667e-02   p_cons 3.658667e-01   p_joint 8.900000e-02

Joint ci ratio: 6.305759e-02	ci left: 8.531516e-02	ci right 9.089480e-02	k: 3523	n:40000
Cons ci ratio: 2.572164e-02	ci left: 3.625980e-01	ci right 3.720713e-01	k: 14693	n:40000
KS ci ratio: 1.930743e-01	ci left: 9.214708e-03	ci right 1.120736e-02	k: 407	n:40000
GLYR1   40000 perm   8 sec   (4941 perm/sec)   p_kst 1.017500e-02   p_cons 3.673250e-01   p_joint 8.807500e-02

Joint ci ratio: 6.628151e-02	ci left: 6.320887e-02	ci right 6.756176e-02	k: 3268	n:50000
Cons ci ratio: 2.299870e-02	ci left: 3.632519e-01	ci right 3.717235e-01	k: 18374	n:50000
KS ci ratio: 1.725205e-01	ci left: 9.337809e-03	ci right 1.111974e-02	k: 510	n:50000
GLYR1   50000 perm   10 sec   (4807 perm/sec)   p_kst 1.020000e-02   p_cons 3.674800e-01   p_joint 6.536000e-02

Joint ci ratio: 6.064562e-02	ci left: 6.312231e-02	ci right 6.708655e-02	k: 3905	n:60000
Cons ci ratio: 2.098957e-02	ci left: 3.637402e-01	ci right 3.714726e-01	k: 22056	n:60000
KS ci ratio: 1.608627e-01	ci left: 9.011227e-03	ci right 1.060339e-02	k: 587	n:60000
GLYR1   60000 perm   13 sec   (4695 perm/sec)   p_kst 9.783333e-03   p_cons 3.676000e-01   p_joint 6.508333e-02

Joint ci ratio: 5.693277e-02	ci left: 6.161990e-02	ci right 6.524497e-02	k: 4439	n:70000
Cons ci ratio: 1.939987e-02	ci left: 3.648107e-01	ci right 3.719716e-01	k: 25787	n:70000
KS ci ratio: 1.502630e-01	ci left: 8.904657e-03	ci right 1.036499e-02	k: 673	n:70000
GLYR1   70000 perm   15 sec   (4579 perm/sec)   p_kst 9.614286e-03   p_cons 3.683857e-01   p_joint 6.341429e-02

Joint ci ratio: 6.917834e-02	ci left: 3.725102e-02	ci right 3.993257e-02	k: 3086	n:80000
Cons ci ratio: 1.809051e-02	ci left: 3.664907e-01	ci right 3.731937e-01	k: 29587	n:80000
KS ci ratio: 1.414215e-01	ci left: 8.839394e-03	ci right 1.019653e-02	k: 760	n:80000
GLYR1   80000 perm   18 sec   (4482 perm/sec)   p_kst 9.500000e-03   p_cons 3.698375e-01   p_joint 3.857500e-02

Joint ci ratio: 6.517200e-02	ci left: 3.738359e-02	ci right 3.991292e-02	k: 3477	n:90000
Cons ci ratio: 1.703822e-02	ci left: 3.671661e-01	ci right 3.734867e-01	k: 33329	n:90000
KS ci ratio: 1.329520e-01	ci left: 8.930267e-03	ci right 1.021275e-02	k: 860	n:90000
GLYR1   90000 perm   21 sec   (4390 perm/sec)   p_kst 9.555556e-03   p_cons 3.703222e-01   p_joint 3.863333e-02

Joint ci ratio: 4.127636e-02	ci left: 8.101984e-02	ci right 8.444441e-02	k: 8272	n:100000
Cons ci ratio: 1.616641e-02	ci left: 3.672560e-01	ci right 3.732515e-01	k: 37025	n:100000
KS ci ratio: 1.264411e-01	ci left: 8.917721e-03	ci right 1.013098e-02	k: 951	n:100000
GLYR1   100000 perm   23 sec   (4266 perm/sec)   p_kst 9.510000e-03   p_cons 3.702500e-01   p_joint 8.272000e-02

Joint ci ratio: 5.886318e-02	ci left: 3.761262e-02	ci right 3.990269e-02	k: 4262	n:110000
Cons ci ratio: 1.541305e-02	ci left: 3.674271e-01	ci right 3.731433e-01	k: 40731	n:110000
KS ci ratio: 1.210363e-01	ci left: 8.873440e-03	ci right 1.002537e-02	k: 1038	n:110000
GLYR1   110000 perm   26 sec   (4166 perm/sec)   p_kst 9.436364e-03   p_cons 3.702818e-01   p_joint 3.874545e-02

Joint ci ratio: 5.634176e-02	ci left: 3.768146e-02	ci right 3.987423e-02	k: 4652	n:120000
Cons ci ratio: 1.474894e-02	ci left: 3.677998e-01	ci right 3.732731e-01	k: 44464	n:120000
KS ci ratio: 1.159069e-01	ci left: 8.894117e-03	ci right 9.996452e-03	k: 1132	n:120000
GLYR1   120000 perm   29 sec   (4073 perm/sec)   p_kst 9.433333e-03   p_cons 3.705333e-01   p_joint 3.876667e-02

Joint ci ratio: 5.419718e-02	ci left: 3.763519e-02	ci right 3.973929e-02	k: 5028	n:130000
Cons ci ratio: 1.417860e-02	ci left: 3.676357e-01	ci right 3.728931e-01	k: 48134	n:130000
KS ci ratio: 1.114706e-01	ci left: 8.897526e-03	ci right 9.955300e-03	k: 1224	n:130000
GLYR1   130000 perm   32 sec   (4009 perm/sec)   p_kst 9.415385e-03   p_cons 3.702615e-01   p_joint 3.867692e-02

Joint ci ratio: 5.212990e-02	ci left: 3.780850e-02	ci right 3.983923e-02	k: 5434	n:140000
Cons ci ratio: 1.365169e-02	ci left: 3.681120e-01	ci right 3.731790e-01	k: 51890	n:140000
KS ci ratio: 1.073022e-01	ci left: 8.935901e-03	ci right 9.956000e-03	k: 1321	n:140000
GLYR1   140000 perm   35 sec   (3946 perm/sec)   p_kst 9.435714e-03   p_cons 3.706429e-01   p_joint 3.881429e-02

Joint ci ratio: 5.180572e-02	ci left: 3.581336e-02	ci right 3.772459e-02	k: 5514	n:150000
Cons ci ratio: 1.318285e-02	ci left: 3.684081e-01	ci right 3.733036e-01	k: 55628	n:150000
KS ci ratio: 1.040885e-01	ci left: 8.878866e-03	ci right 9.860239e-03	k: 1404	n:150000
GLYR1   150000 perm   39 sec   (3883 perm/sec)   p_kst 9.360000e-03   p_cons 3.708533e-01   p_joint 3.676000e-02

Joint ci ratio: 4.893723e-02	ci left: 3.761191e-02	ci right 3.950485e-02	k: 6168	n:160000
Cons ci ratio: 1.276845e-02	ci left: 3.683326e-01	ci right 3.730721e-01	k: 59312	n:160000
KS ci ratio: 1.010788e-01	ci left: 8.841549e-03	ci right 9.788860e-03	k: 1489	n:160000
GLYR1   160000 perm   42 sec   (3822 perm/sec)   p_kst 9.306250e-03   p_cons 3.707000e-01   p_joint 3.855000e-02

Joint ci ratio: 7.230846e-02	ci left: 1.637925e-02	ci right 1.761378e-02	k: 2888	n:170000
Cons ci ratio: 1.239425e-02	ci left: 3.681390e-01	ci right 3.727360e-01	k: 62974	n:170000
KS ci ratio: 9.778454e-02	ci left: 8.906552e-03	ci right 9.827943e-03	k: 1591	n:170000
GLYR1   170000 perm   45 sec   (3764 perm/sec)   p_kst 9.358824e-03   p_cons 3.704353e-01   p_joint 1.698824e-02

Outputting figure to mutsig2_images.part000000000071/GLYR1.2_1726_170000_0.0093588_0.37044_0.016988.png
                gene_name: GLYR1
               theta_stop: 0.098 
                    nperm: 170000 
                     p_ks: 0.0094 
        ci_ks_bounds_left: 0.0089 
       ci_ks_bounds_right: 0.0098 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.017 
     ci_joint_bounds_left: 0.016 
    ci_joint_bounds_right: 0.018 

Current progress: 89 percent done.
GMCL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.664246e-03	ci left: 9.491889e-01	ci right 9.575444e-01	k: 9535	n:10000
Cons ci ratio: 5.069396e-02	ci left: 3.646037e-01	ci right 3.836696e-01	k: 3741	n:10000
KS ci ratio: 2.327743e-02	ci left: 7.305765e-01	ci right 7.478839e-01	k: 7393	n:10000
GMCL1   10000 perm   2 sec   (6141 perm/sec)   p_kst 7.393000e-01   p_cons 3.741000e-01   p_joint 9.535000e-01

Outputting figure to mutsig2_images.part000000000071/GMCL1.2_1604_10000_0.7393_0.3741_0.9535.png
                gene_name: GMCL1
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 91 percent done.
GMIP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.477164e-02	ci left: 8.690740e-01	ci right 8.821063e-01	k: 8757	n:10000
Cons ci ratio: 2.351292e-02	ci left: 7.266365e-01	ci right 7.440262e-01	k: 7354	n:10000
KS ci ratio: 4.092516e-02	ci left: 4.685668e-01	ci right 4.882458e-01	k: 4784	n:10000
GMIP   10000 perm   2 sec   (5494 perm/sec)   p_kst 4.784000e-01   p_cons 7.354000e-01   p_joint 8.757000e-01

Outputting figure to mutsig2_images.part000000000071/GMIP.2_2997_10000_0.4784_0.7354_0.8757.png
                gene_name: GMIP
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 93 percent done.
GMNN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.385488e-02	ci left: 8.826795e-01	ci right 8.950929e-01	k: 8890	n:10000
KS ci ratio: 1.844806e-02	ci left: 8.110065e-01	ci right 8.262075e-01	k: 8187	n:10000
GMNN   10000 perm   1 sec   (6694 perm/sec)   p_kst 8.187000e-01   p_cons 8.890000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000071/GMNN.2_654_10000_0.8187_0.889_1.png
                gene_name: GMNN
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
GMPPA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.046878e+00	ci left: 6.923711e-04	ci right 2.222014e-03	k: 13	n:10000
Cons ci ratio: 1.490358e-01	ci left: 5.985938e-02	ci right 6.959607e-02	k: 646	n:10000
KS ci ratio: 7.268333e-01	ci left: 1.861361e-03	ci right 4.044256e-03	k: 28	n:10000
GMPPA   10000 perm   2 sec   (6439 perm/sec)   p_kst 2.800000e-03   p_cons 6.460000e-02   p_joint 1.300000e-03

Joint ci ratio: 2.531120e-01	ci left: 1.034973e-02	ci right 1.339466e-02	k: 236	n:20000
Cons ci ratio: 1.061339e-01	ci left: 6.045150e-02	ci right 6.727598e-02	k: 1276	n:20000
KS ci ratio: 5.011261e-01	ci left: 2.290073e-03	ci right 3.859930e-03	k: 60	n:20000
GMPPA   20000 perm   4 sec   (5682 perm/sec)   p_kst 3.000000e-03   p_cons 6.380000e-02   p_joint 1.180000e-02

Joint ci ratio: 1.540268e-01	ci left: 1.950355e-02	ci right 2.279010e-02	k: 633	n:30000
Cons ci ratio: 8.730545e-02	ci left: 6.021111e-02	ci right 6.574056e-02	k: 1888	n:30000
KS ci ratio: 3.913396e-01	ci left: 2.682862e-03	ci right 4.016189e-03	k: 99	n:30000
GMPPA   30000 perm   6 sec   (5443 perm/sec)   p_kst 3.300000e-03   p_cons 6.293333e-02   p_joint 2.110000e-02

Joint ci ratio: 1.426630e-01	ci left: 1.720201e-02	ci right 1.986854e-02	k: 740	n:40000
Cons ci ratio: 7.590965e-02	ci left: 6.012261e-02	ci right 6.489115e-02	k: 2499	n:40000
KS ci ratio: 3.543541e-01	ci left: 2.510680e-03	ci right 3.613423e-03	k: 121	n:40000
GMPPA   40000 perm   8 sec   (5279 perm/sec)   p_kst 3.025000e-03   p_cons 6.247500e-02   p_joint 1.850000e-02

Joint ci ratio: 1.221545e-01	ci left: 1.894599e-02	ci right 2.143016e-02	k: 1008	n:50000
Cons ci ratio: 6.788422e-02	ci left: 6.039372e-02	ci right 6.465724e-02	k: 3125	n:50000
KS ci ratio: 3.273345e-01	ci left: 2.392621e-03	ci right 3.346552e-03	k: 142	n:50000
GMPPA   50000 perm   10 sec   (5137 perm/sec)   p_kst 2.840000e-03   p_cons 6.250000e-02   p_joint 2.016000e-02

Joint ci ratio: 1.131338e-01	ci left: 1.850577e-02	ci right 2.074104e-02	k: 1176	n:60000
Cons ci ratio: 6.198901e-02	ci left: 6.054315e-02	ci right 6.443263e-02	k: 3748	n:60000
KS ci ratio: 2.993399e-01	ci left: 2.423896e-03	ci right 3.291968e-03	k: 170	n:60000
GMPPA   60000 perm   12 sec   (5014 perm/sec)   p_kst 2.833333e-03   p_cons 6.246667e-02   p_joint 1.960000e-02

Joint ci ratio: 1.052181e-01	ci left: 1.841889e-02	ci right 2.047835e-02	k: 1360	n:70000
Cons ci ratio: 5.715300e-02	ci left: 6.116885e-02	ci right 6.478176e-02	k: 4407	n:70000
KS ci ratio: 2.774842e-01	ci left: 2.448732e-03	ci right 3.250503e-03	k: 198	n:70000
GMPPA   70000 perm   14 sec   (4893 perm/sec)   p_kst 2.828571e-03   p_cons 6.295714e-02   p_joint 1.942857e-02

Joint ci ratio: 9.349743e-02	ci left: 2.049383e-02	ci right 2.251608e-02	k: 1719	n:80000
Cons ci ratio: 5.361935e-02	ci left: 6.094336e-02	ci right 6.431345e-02	k: 5009	n:80000
KS ci ratio: 2.615475e-01	ci left: 2.434039e-03	ci right 3.177746e-03	k: 223	n:80000
GMPPA   80000 perm   17 sec   (4785 perm/sec)   p_kst 2.787500e-03   p_cons 6.261250e-02   p_joint 2.148750e-02

Joint ci ratio: 1.122137e-01	ci left: 1.262656e-02	ci right 1.413838e-02	k: 1203	n:90000
Cons ci ratio: 5.037312e-02	ci left: 6.145416e-02	ci right 6.464074e-02	k: 5673	n:90000
KS ci ratio: 2.485757e-01	ci left: 2.413215e-03	ci right 3.108339e-03	k: 247	n:90000
GMPPA   90000 perm   19 sec   (4686 perm/sec)   p_kst 2.744444e-03   p_cons 6.303333e-02   p_joint 1.336667e-02

Joint ci ratio: 1.126693e-01	ci left: 1.128571e-02	ci right 1.264282e-02	k: 1195	n:100000
Cons ci ratio: 4.778186e-02	ci left: 6.155126e-02	ci right 6.457414e-02	k: 6305	n:100000
KS ci ratio: 2.400295e-01	ci left: 2.340866e-03	ci right 2.988517e-03	k: 265	n:100000
GMPPA   100000 perm   22 sec   (4589 perm/sec)   p_kst 2.650000e-03   p_cons 6.305000e-02   p_joint 1.195000e-02

Joint ci ratio: 1.080344e-01	ci left: 1.118791e-02	ci right 1.247439e-02	k: 1300	n:110000
Cons ci ratio: 4.551833e-02	ci left: 6.172410e-02	ci right 6.460808e-02	k: 6947	n:110000
KS ci ratio: 2.287026e-01	ci left: 2.359112e-03	ci right 2.976666e-03	k: 292	n:110000
GMPPA   110000 perm   25 sec   (4484 perm/sec)   p_kst 2.654545e-03   p_cons 6.315455e-02   p_joint 1.181818e-02

Joint ci ratio: 1.037043e-01	ci left: 1.115608e-02	ci right 1.238435e-02	k: 1411	n:120000
Cons ci ratio: 4.361317e-02	ci left: 6.169773e-02	ci right 6.445677e-02	k: 7568	n:120000
KS ci ratio: 2.174827e-01	ci left: 2.406431e-03	ci right 3.001340e-03	k: 323	n:120000
GMPPA   120000 perm   27 sec   (4402 perm/sec)   p_kst 2.691667e-03   p_cons 6.306667e-02   p_joint 1.175833e-02

Joint ci ratio: 1.001562e-01	ci left: 1.106251e-02	ci right 1.223635e-02	k: 1513	n:130000
Cons ci ratio: 4.201098e-02	ci left: 6.144905e-02	ci right 6.409357e-02	k: 8159	n:130000
KS ci ratio: 2.086528e-01	ci left: 2.425218e-03	ci right 2.997323e-03	k: 351	n:130000
GMPPA   130000 perm   30 sec   (4316 perm/sec)   p_kst 2.700000e-03   p_cons 6.276154e-02   p_joint 1.163846e-02

Joint ci ratio: 9.688824e-02	ci left: 1.099687e-02	ci right 1.212350e-02	k: 1617	n:140000
Cons ci ratio: 4.055596e-02	ci left: 6.128705e-02	ci right 6.383110e-02	k: 8757	n:140000
KS ci ratio: 2.005535e-01	ci left: 2.448525e-03	ci right 3.000963e-03	k: 380	n:140000
GMPPA   140000 perm   33 sec   (4234 perm/sec)   p_kst 2.714286e-03   p_cons 6.255000e-02   p_joint 1.155000e-02

Joint ci ratio: 9.102349e-02	ci left: 1.165709e-02	ci right 1.277522e-02	k: 1831	n:150000
Cons ci ratio: 3.921774e-02	ci left: 6.122070e-02	ci right 6.367624e-02	k: 9366	n:150000
KS ci ratio: 1.935664e-01	ci left: 2.462750e-03	ci right 2.996760e-03	k: 408	n:150000
GMPPA   150000 perm   36 sec   (4151 perm/sec)   p_kst 2.720000e-03   p_cons 6.244000e-02   p_joint 1.220667e-02

Joint ci ratio: 8.804499e-02	ci left: 1.169840e-02	ci right 1.278189e-02	k: 1957	n:160000
Cons ci ratio: 3.801193e-02	ci left: 6.113909e-02	ci right 6.351430e-02	k: 9971	n:160000
KS ci ratio: 1.868340e-01	ci left: 2.487405e-03	ci right 3.005875e-03	k: 438	n:160000
GMPPA   160000 perm   39 sec   (4078 perm/sec)   p_kst 2.737500e-03   p_cons 6.231875e-02   p_joint 1.223125e-02

Joint ci ratio: 8.559079e-02	ci left: 1.166628e-02	ci right 1.271516e-02	k: 2071	n:170000
Cons ci ratio: 3.690347e-02	ci left: 6.109144e-02	ci right 6.339411e-02	k: 10580	n:170000
KS ci ratio: 1.813409e-01	ci left: 2.492593e-03	ci right 2.995191e-03	k: 465	n:170000
GMPPA   170000 perm   42 sec   (4003 perm/sec)   p_kst 2.735294e-03   p_cons 6.223529e-02   p_joint 1.218235e-02

Joint ci ratio: 8.429255e-02	ci left: 1.137152e-02	ci right 1.237763e-02	k: 2136	n:180000
Cons ci ratio: 3.584397e-02	ci left: 6.118770e-02	ci right 6.342642e-02	k: 11214	n:180000
KS ci ratio: 1.788704e-01	ci left: 2.423074e-03	ci right 2.904277e-03	k: 478	n:180000
GMPPA   180000 perm   46 sec   (3935 perm/sec)   p_kst 2.655556e-03   p_cons 6.230000e-02   p_joint 1.186667e-02

Joint ci ratio: 8.127699e-02	ci left: 1.160290e-02	ci right 1.259102e-02	k: 2297	n:190000
Cons ci ratio: 3.484099e-02	ci left: 6.137387e-02	ci right 6.355530e-02	k: 11867	n:190000
KS ci ratio: 1.745522e-01	ci left: 2.416272e-03	ci right 2.883319e-03	k: 502	n:190000
GMPPA   190000 perm   49 sec   (3866 perm/sec)   p_kst 2.642105e-03   p_cons 6.245789e-02   p_joint 1.208947e-02

Joint ci ratio: 9.098886e-02	ci left: 8.776424e-03	ci right 9.617894e-03	k: 1838	n:200000
Cons ci ratio: 3.394957e-02	ci left: 6.143306e-02	ci right 6.355964e-02	k: 12498	n:200000
KS ci ratio: 1.702088e-01	ci left: 2.419851e-03	ci right 2.874755e-03	k: 528	n:200000
GMPPA   200000 perm   53 sec   (3804 perm/sec)   p_kst 2.640000e-03   p_cons 6.249000e-02   p_joint 9.190000e-03

Joint ci ratio: 8.394916e-02	ci left: 9.844585e-03	ci right 1.071187e-02	k: 2157	n:210000
Cons ci ratio: 3.311787e-02	ci left: 6.150617e-02	ci right 6.358212e-02	k: 13133	n:210000
KS ci ratio: 1.660244e-01	ci left: 2.427783e-03	ci right 2.871837e-03	k: 555	n:210000
GMPPA   210000 perm   56 sec   (3744 perm/sec)   p_kst 2.642857e-03   p_cons 6.253810e-02   p_joint 1.027143e-02

Joint ci ratio: 8.357872e-02	ci left: 9.486035e-03	ci right 1.031786e-02	k: 2177	n:220000
Cons ci ratio: 3.232816e-02	ci left: 6.163185e-02	ci right 6.366151e-02	k: 13781	n:220000
KS ci ratio: 1.629772e-01	ci left: 2.408952e-03	ci right 2.840683e-03	k: 576	n:220000
GMPPA   220000 perm   60 sec   (3687 perm/sec)   p_kst 2.618182e-03   p_cons 6.264091e-02   p_joint 9.895455e-03

Joint ci ratio: 8.604333e-02	ci left: 8.558490e-03	ci right 9.332222e-03	k: 2056	n:230000
Cons ci ratio: 3.162396e-02	ci left: 6.163061e-02	ci right 6.361521e-02	k: 14402	n:230000
KS ci ratio: 1.598241e-01	ci left: 2.400175e-03	ci right 2.821211e-03	k: 599	n:230000
GMPPA   230000 perm   63 sec   (3628 perm/sec)   p_kst 2.604348e-03   p_cons 6.261739e-02   p_joint 8.939130e-03

Joint ci ratio: 7.996957e-02	ci left: 9.515917e-03	ci right 1.031265e-02	k: 2378	n:240000
Cons ci ratio: 3.092216e-02	ci left: 6.178710e-02	ci right 6.373181e-02	k: 15061	n:240000
KS ci ratio: 1.565954e-01	ci left: 2.400210e-03	ci right 2.811948e-03	k: 624	n:240000
GMPPA   240000 perm   67 sec   (3575 perm/sec)   p_kst 2.600000e-03   p_cons 6.275417e-02   p_joint 9.908333e-03

Joint ci ratio: 7.841981e-02	ci left: 9.507753e-03	ci right 1.028767e-02	k: 2473	n:250000
Cons ci ratio: 3.027536e-02	ci left: 6.189180e-02	ci right 6.379835e-02	k: 15710	n:250000
KS ci ratio: 1.532007e-01	ci left: 2.411862e-03	ci right 2.815807e-03	k: 652	n:250000
GMPPA   250000 perm   71 sec   (3521 perm/sec)   p_kst 2.608000e-03   p_cons 6.284000e-02   p_joint 9.892000e-03

Joint ci ratio: 7.697192e-02	ci left: 9.496582e-03	ci right 1.026056e-02	k: 2567	n:260000
Cons ci ratio: 2.969077e-02	ci left: 6.189717e-02	ci right 6.376643e-02	k: 16335	n:260000
KS ci ratio: 1.499073e-01	ci left: 2.426408e-03	ci right 2.823270e-03	k: 681	n:260000
GMPPA   260000 perm   75 sec   (3470 perm/sec)   p_kst 2.619231e-03   p_cons 6.282692e-02   p_joint 9.873077e-03

Joint ci ratio: 7.820991e-02	ci left: 8.857827e-03	ci right 9.582397e-03	k: 2488	n:270000
Cons ci ratio: 2.914154e-02	ci left: 6.189144e-02	ci right 6.372537e-02	k: 16957	n:270000
KS ci ratio: 1.476527e-01	ci left: 2.411422e-03	ci right 2.799377e-03	k: 702	n:270000
GMPPA   270000 perm   79 sec   (3421 perm/sec)   p_kst 2.600000e-03   p_cons 6.280370e-02   p_joint 9.214815e-03

Joint ci ratio: 7.397691e-02	ci left: 9.561122e-03	ci right 1.029907e-02	k: 2779	n:280000
Cons ci ratio: 2.857663e-02	ci left: 6.207088e-02	ci right 6.387389e-02	k: 17631	n:280000
KS ci ratio: 1.448962e-01	ci left: 2.418200e-03	ci right 2.799354e-03	k: 729	n:280000
GMPPA   280000 perm   83 sec   (3370 perm/sec)   p_kst 2.603571e-03   p_cons 6.296786e-02   p_joint 9.925000e-03

Joint ci ratio: 7.270666e-02	ci left: 9.563162e-03	ci right 1.028806e-02	k: 2877	n:290000
Cons ci ratio: 2.806216e-02	ci left: 6.215948e-02	ci right 6.393203e-02	k: 18282	n:290000
KS ci ratio: 1.419131e-01	ci left: 2.437877e-03	ci right 2.813552e-03	k: 760	n:290000
GMPPA   290000 perm   87 sec   (3322 perm/sec)   p_kst 2.620690e-03   p_cons 6.304138e-02   p_joint 9.920690e-03

Joint ci ratio: 7.158475e-02	ci left: 9.542247e-03	ci right 1.025394e-02	k: 2968	n:300000
Cons ci ratio: 2.757140e-02	ci left: 6.225568e-02	ci right 6.399944e-02	k: 18937	n:300000
KS ci ratio: 1.398167e-01	ci left: 2.430578e-03	ci right 2.799134e-03	k: 783	n:300000
GMPPA   300000 perm   92 sec   (3275 perm/sec)   p_kst 2.610000e-03   p_cons 6.312333e-02   p_joint 9.893333e-03

Joint ci ratio: 7.048996e-02	ci left: 9.529101e-03	ci right 1.022849e-02	k: 3061	n:310000
Cons ci ratio: 2.712473e-02	ci left: 6.226259e-02	ci right 6.397785e-02	k: 19566	n:310000
KS ci ratio: 1.376397e-01	ci left: 2.430019e-03	ci right 2.792282e-03	k: 808	n:310000
GMPPA   310000 perm   96 sec   (3228 perm/sec)   p_kst 2.606452e-03   p_cons 6.311613e-02   p_joint 9.874194e-03

Joint ci ratio: 7.193801e-02	ci left: 8.862884e-03	ci right 9.527300e-03	k: 2941	n:320000
Cons ci ratio: 2.670262e-02	ci left: 6.225375e-02	ci right 6.394167e-02	k: 20190	n:320000
KS ci ratio: 1.356428e-01	ci left: 2.426517e-03	ci right 2.782586e-03	k: 832	n:320000
GMPPA   320000 perm   101 sec   (3181 perm/sec)   p_kst 2.600000e-03   p_cons 6.309375e-02   p_joint 9.190625e-03

Joint ci ratio: 7.085071e-02	ci left: 8.865147e-03	ci right 9.519273e-03	k: 3032	n:330000
Cons ci ratio: 2.627874e-02	ci left: 6.233901e-02	ci right 6.400200e-02	k: 20845	n:330000
KS ci ratio: 1.334964e-01	ci left: 2.432050e-03	ci right 2.782836e-03	k: 859	n:330000
GMPPA   330000 perm   105 sec   (3139 perm/sec)   p_kst 2.603030e-03   p_cons 6.316667e-02   p_joint 9.187879e-03

Joint ci ratio: 7.041664e-02	ci left: 8.714174e-03	ci right 9.353060e-03	k: 3070	n:340000
Cons ci ratio: 2.589887e-02	ci left: 6.230836e-02	ci right 6.394615e-02	k: 21462	n:340000
KS ci ratio: 1.318218e-01	ci left: 2.423077e-03	ci right 2.767841e-03	k: 881	n:340000
GMPPA   340000 perm   110 sec   (3098 perm/sec)   p_kst 2.591176e-03   p_cons 6.312353e-02   p_joint 9.029412e-03

Joint ci ratio: 6.794707e-02	ci left: 9.099804e-03	ci right 9.742644e-03	k: 3296	n:350000
Cons ci ratio: 2.551281e-02	ci left: 6.238188e-02	ci right 6.399679e-02	k: 22115	n:350000
KS ci ratio: 1.300644e-01	ci left: 2.420171e-03	ci right 2.759577e-03	k: 905	n:350000
GMPPA   350000 perm   115 sec   (3056 perm/sec)   p_kst 2.585714e-03   p_cons 6.318571e-02   p_joint 9.417143e-03

Joint ci ratio: 6.594663e-02	ci left: 9.398797e-03	ci right 1.004246e-02	k: 3498	n:360000
Cons ci ratio: 2.517659e-02	ci left: 6.229683e-02	ci right 6.388799e-02	k: 22712	n:360000
KS ci ratio: 1.282374e-01	ci left: 2.422833e-03	ci right 2.757476e-03	k: 931	n:360000
GMPPA   360000 perm   119 sec   (3016 perm/sec)   p_kst 2.586111e-03   p_cons 6.308889e-02   p_joint 9.716667e-03

Joint ci ratio: 6.696748e-02	ci left: 8.868284e-03	ci right 9.485385e-03	k: 3394	n:370000
Cons ci ratio: 2.485046e-02	ci left: 6.222996e-02	ci right 6.379852e-02	k: 23314	n:370000
KS ci ratio: 1.266178e-01	ci left: 2.420148e-03	ci right 2.749881e-03	k: 955	n:370000
GMPPA   370000 perm   124 sec   (2978 perm/sec)   p_kst 2.581081e-03   p_cons 6.301081e-02   p_joint 9.172973e-03

Joint ci ratio: 6.611641e-02	ci left: 8.862633e-03	ci right 9.471203e-03	k: 3482	n:380000
Cons ci ratio: 2.451755e-02	ci left: 6.225830e-02	ci right 6.380626e-02	k: 23951	n:380000
KS ci ratio: 1.253791e-01	ci left: 2.404883e-03	ci right 2.729093e-03	k: 974	n:380000
GMPPA   380000 perm   129 sec   (2941 perm/sec)   p_kst 2.563158e-03   p_cons 6.302895e-02   p_joint 9.163158e-03

Joint ci ratio: 6.519572e-02	ci left: 8.885068e-03	ci right 9.486361e-03	k: 3581	n:390000
Cons ci ratio: 2.417565e-02	ci left: 6.239242e-02	ci right 6.392178e-02	k: 24630	n:390000
KS ci ratio: 1.241136e-01	ci left: 2.392900e-03	ci right 2.711999e-03	k: 994	n:390000
GMPPA   390000 perm   134 sec   (2906 perm/sec)   p_kst 2.548718e-03   p_cons 6.315385e-02   p_joint 9.182051e-03

Joint ci ratio: 6.423325e-02	ci left: 8.928578e-03	ci right 9.523564e-03	k: 3689	n:400000
Cons ci ratio: 2.382856e-02	ci left: 6.261443e-02	ci right 6.412690e-02	k: 25347	n:400000
KS ci ratio: 1.224029e-01	ci left: 2.400920e-03	ci right 2.716355e-03	k: 1022	n:400000
GMPPA   400000 perm   139 sec   (2870 perm/sec)   p_kst 2.555000e-03   p_cons 6.336750e-02   p_joint 9.222500e-03

Joint ci ratio: 6.350654e-02	ci left: 8.914812e-03	ci right 9.501912e-03	k: 3774	n:410000
Cons ci ratio: 2.354087e-02	ci left: 6.260018e-02	ci right 6.409380e-02	k: 25971	n:410000
KS ci ratio: 1.210501e-01	ci left: 2.396750e-03	ci right 2.707908e-03	k: 1045	n:410000
GMPPA   410000 perm   145 sec   (2836 perm/sec)   p_kst 2.548780e-03   p_cons 6.334390e-02   p_joint 9.204878e-03

Joint ci ratio: 6.542024e-02	ci left: 8.198800e-03	ci right 8.755632e-03	k: 3559	n:420000
Cons ci ratio: 2.324749e-02	ci left: 6.266723e-02	ci right 6.414356e-02	k: 26629	n:420000
KS ci ratio: 1.193500e-01	ci left: 2.408966e-03	ci right 2.717008e-03	k: 1075	n:420000
GMPPA   420000 perm   150 sec   (2803 perm/sec)   p_kst 2.559524e-03   p_cons 6.340238e-02   p_joint 8.473810e-03

Joint ci ratio: 6.554753e-02	ci left: 7.978363e-03	ci right 8.521318e-03	k: 3546	n:430000
Cons ci ratio: 2.298190e-02	ci left: 6.264337e-02	ci right 6.410206e-02	k: 27249	n:430000
KS ci ratio: 1.181488e-01	ci left: 2.402586e-03	ci right 2.706504e-03	k: 1097	n:430000
GMPPA   430000 perm   155 sec   (2770 perm/sec)   p_kst 2.551163e-03   p_cons 6.336977e-02   p_joint 8.246512e-03

Joint ci ratio: 6.481179e-02	ci left: 7.978127e-03	ci right 8.514742e-03	k: 3627	n:440000
Cons ci ratio: 2.272652e-02	ci left: 6.261390e-02	ci right 6.405549e-02	k: 27866	n:440000
KS ci ratio: 1.172985e-01	ci left: 2.383273e-03	ci right 2.682429e-03	k: 1113	n:440000
GMPPA   440000 perm   161 sec   (2739 perm/sec)   p_kst 2.529545e-03   p_cons 6.333182e-02   p_joint 8.243182e-03

Joint ci ratio: 6.423138e-02	ci left: 7.945132e-03	ci right 8.474563e-03	k: 3693	n:450000
Cons ci ratio: 2.250098e-02	ci left: 6.247309e-02	ci right 6.389698e-02	k: 28432	n:450000
KS ci ratio: 1.156990e-01	ci left: 2.397194e-03	ci right 2.693713e-03	k: 1144	n:450000
GMPPA   450000 perm   166 sec   (2708 perm/sec)   p_kst 2.542222e-03   p_cons 6.318222e-02   p_joint 8.206667e-03

Joint ci ratio: 6.364068e-02	ci left: 7.920010e-03	ci right 8.442735e-03	k: 3762	n:460000
Cons ci ratio: 2.225458e-02	ci left: 6.248337e-02	ci right 6.389170e-02	k: 29065	n:460000
KS ci ratio: 1.145054e-01	ci left: 2.395753e-03	ci right 2.688830e-03	k: 1168	n:460000
GMPPA   460000 perm   172 sec   (2678 perm/sec)   p_kst 2.539130e-03   p_cons 6.318478e-02   p_joint 8.178261e-03

Joint ci ratio: 6.492826e-02	ci left: 7.445795e-03	ci right 7.947537e-03	k: 3616	n:470000
Cons ci ratio: 2.201651e-02	ci left: 6.249118e-02	ci right 6.388443e-02	k: 29697	n:470000
KS ci ratio: 1.134433e-01	ci left: 2.390253e-03	ci right 2.679764e-03	k: 1190	n:470000
GMPPA   470000 perm   177 sec   (2648 perm/sec)   p_kst 2.531915e-03   p_cons 6.318511e-02   p_joint 7.693617e-03

Joint ci ratio: 6.555731e-02	ci left: 7.151283e-03	ci right 7.638025e-03	k: 3548	n:480000
Cons ci ratio: 2.178860e-02	ci left: 6.248423e-02	ci right 6.386272e-02	k: 30322	n:480000
KS ci ratio: 1.125965e-01	ci left: 2.376895e-03	ci right 2.662496e-03	k: 1208	n:480000
GMPPA   480000 perm   183 sec   (2619 perm/sec)   p_kst 2.516667e-03   p_cons 6.317083e-02   p_joint 7.391667e-03

Joint ci ratio: 6.494759e-02	ci left: 7.139841e-03	ci right 7.621114e-03	k: 3615	n:490000
Cons ci ratio: 2.157395e-02	ci left: 6.244311e-02	ci right 6.380696e-02	k: 30930	n:490000
KS ci ratio: 1.117684e-01	ci left: 2.364090e-03	ci right 2.645925e-03	k: 1226	n:490000
GMPPA   490000 perm   189 sec   (2590 perm/sec)   p_kst 2.502041e-03   p_cons 6.312245e-02   p_joint 7.377551e-03

Joint ci ratio: 6.440744e-02	ci left: 7.117068e-03	ci right 7.592667e-03	k: 3676	n:500000
Cons ci ratio: 2.136443e-02	ci left: 6.240968e-02	ci right 6.375939e-02	k: 31541	n:500000
KS ci ratio: 1.105142e-01	ci left: 2.371252e-03	ci right 2.650562e-03	k: 1254	n:500000
GMPPA   500000 perm   195 sec   (2563 perm/sec)   p_kst 2.508000e-03   p_cons 6.308200e-02   p_joint 7.352000e-03

Joint ci ratio: 6.390638e-02	ci left: 7.089415e-03	ci right 7.559345e-03	k: 3734	n:510000
Cons ci ratio: 2.115705e-02	ci left: 6.239908e-02	ci right 6.373530e-02	k: 32163	n:510000
KS ci ratio: 1.094296e-01	ci left: 2.372428e-03	ci right 2.648958e-03	k: 1279	n:510000
GMPPA   510000 perm   201 sec   (2535 perm/sec)   p_kst 2.507843e-03   p_cons 6.306471e-02   p_joint 7.321569e-03

Joint ci ratio: 6.322401e-02	ci left: 7.106376e-03	ci right 7.572216e-03	k: 3815	n:520000
Cons ci ratio: 2.094638e-02	ci left: 6.244062e-02	ci right 6.376426e-02	k: 32812	n:520000
KS ci ratio: 1.084598e-01	ci left: 2.369830e-03	ci right 2.643452e-03	k: 1302	n:520000
GMPPA   520000 perm   207 sec   (2509 perm/sec)   p_kst 2.503846e-03   p_cons 6.310000e-02   p_joint 7.336538e-03

Joint ci ratio: 6.264407e-02	ci left: 7.104147e-03	ci right 7.565414e-03	k: 3886	n:530000
Cons ci ratio: 2.075678e-02	ci left: 6.239616e-02	ci right 6.370674e-02	k: 33416	n:530000
KS ci ratio: 1.076782e-01	ci left: 2.359996e-03	ci right 2.630394e-03	k: 1321	n:530000
GMPPA   530000 perm   213 sec   (2483 perm/sec)   p_kst 2.492453e-03   p_cons 6.304906e-02   p_joint 7.332075e-03

Joint ci ratio: 6.214310e-02	ci left: 7.087433e-03	ci right 7.543803e-03	k: 3949	n:540000
Cons ci ratio: 2.056321e-02	ci left: 6.240500e-02	ci right 6.370340e-02	k: 34048	n:540000
KS ci ratio: 1.062402e-01	ci left: 2.381177e-03	ci right 2.650131e-03	k: 1357	n:540000
GMPPA   540000 perm   220 sec   (2458 perm/sec)   p_kst 2.512963e-03   p_cons 6.305185e-02   p_joint 7.312963e-03

Joint ci ratio: 6.157671e-02	ci left: 7.089245e-03	ci right 7.541422e-03	k: 4022	n:550000
Cons ci ratio: 2.037840e-02	ci left: 6.239367e-02	ci right 6.368003e-02	k: 34669	n:550000
KS ci ratio: 1.051994e-01	ci left: 2.385676e-03	ci right 2.652335e-03	k: 1384	n:550000
GMPPA   550000 perm   226 sec   (2434 perm/sec)   p_kst 2.516364e-03   p_cons 6.303455e-02   p_joint 7.312727e-03

Joint ci ratio: 6.099554e-02	ci left: 7.098045e-03	ci right 7.546360e-03	k: 4099	n:560000
Cons ci ratio: 2.019880e-02	ci left: 6.238102e-02	ci right 6.365565e-02	k: 35289	n:560000
KS ci ratio: 1.042997e-01	ci left: 2.384808e-03	ci right 2.648952e-03	k: 1408	n:560000
GMPPA   560000 perm   232 sec   (2409 perm/sec)   p_kst 2.514286e-03   p_cons 6.301607e-02   p_joint 7.319643e-03

Joint ci ratio: 6.347097e-02	ci left: 6.436321e-03	ci right 6.859945e-03	k: 3788	n:570000
Cons ci ratio: 2.002505e-02	ci left: 6.236187e-02	ci right 6.362503e-02	k: 35905	n:570000
KS ci ratio: 1.033144e-01	ci left: 2.389109e-03	ci right 2.651076e-03	k: 1435	n:570000
GMPPA   570000 perm   239 sec   (2384 perm/sec)   p_kst 2.517544e-03   p_cons 6.299123e-02   p_joint 6.645614e-03

Joint ci ratio: 6.292532e-02	ci left: 6.437345e-03	ci right 6.857261e-03	k: 3854	n:580000
Cons ci ratio: 1.985919e-02	ci left: 6.232284e-02	ci right 6.357463e-02	k: 36509	n:580000
KS ci ratio: 1.026381e-01	ci left: 2.379831e-03	ci right 2.638971e-03	k: 1454	n:580000
GMPPA   580000 perm   246 sec   (2361 perm/sec)   p_kst 2.506897e-03   p_cons 6.294655e-02   p_joint 6.644828e-03

Joint ci ratio: 6.238549e-02	ci left: 6.440018e-03	ci right 6.856374e-03	k: 3921	n:590000
Cons ci ratio: 1.969286e-02	ci left: 6.231217e-02	ci right 6.355314e-02	k: 37129	n:590000
KS ci ratio: 1.016643e-01	ci left: 2.385741e-03	ci right 2.642912e-03	k: 1482	n:590000
GMPPA   590000 perm   252 sec   (2338 perm/sec)   p_kst 2.511864e-03   p_cons 6.293051e-02   p_joint 6.645763e-03

Joint ci ratio: 6.185152e-02	ci left: 6.444258e-03	ci right 6.857194e-03	k: 3989	n:600000
Cons ci ratio: 1.952843e-02	ci left: 6.231517e-02	ci right 6.354572e-02	k: 37757	n:600000
KS ci ratio: 1.009188e-01	ci left: 2.381716e-03	ci right 2.636459e-03	k: 1504	n:600000
GMPPA   600000 perm   259 sec   (2315 perm/sec)   p_kst 2.506667e-03   p_cons 6.292833e-02   p_joint 6.648333e-03

Joint ci ratio: 5.840325e-02	ci left: 7.116977e-03	ci right 7.546738e-03	k: 4471	n:610000
Cons ci ratio: 1.935541e-02	ci left: 6.239481e-02	ci right 6.361590e-02	k: 38432	n:610000
KS ci ratio: 9.969971e-02	ci left: 2.401807e-03	ci right 2.655414e-03	k: 1541	n:610000
GMPPA   610000 perm   266 sec   (2292 perm/sec)   p_kst 2.526230e-03   p_cons 6.300328e-02   p_joint 7.329508e-03

Outputting figure to mutsig2_images.part000000000071/GMPPA.2_1311_610000_0.0025262_0.063003_0.0073295.png
                gene_name: GMPPA
               theta_stop: 0.100 
                    nperm: 610000 
                     p_ks: 0.0025 
        ci_ks_bounds_left: 0.0024 
       ci_ks_bounds_right: 0.0027 
                   p_cons: 0.063 
      ci_cons_bounds_left: 0.062 
     ci_cons_bounds_right: 0.064 
                  p_joint: 0.0073 
     ci_joint_bounds_left: 0.0071 
    ci_joint_bounds_right: 0.0075 

Current progress: 98 percent done.
GNA12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.289058e-02	ci left: 5.770748e-01	ci right 5.964746e-01	k: 5868	n:10000
KS ci ratio: 3.996985e-02	ci left: 4.803561e-01	ci right 5.000496e-01	k: 4902	n:10000
GNA12   10000 perm   2 sec   (6547 perm/sec)   p_kst 4.902000e-01   p_cons 5.868000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000071/GNA12.2_1162_10000_0.4902_0.5868_1.png
                gene_name: GNA12
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000071
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 71 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1547>
Subject: Job 8004110: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1547>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000072> was used as the working directory.
Started at Sun Nov 11 15:06:22 2012
Results reported at Sun Nov 11 15:17:23 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000072.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000072.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 72  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000072.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    814.57 sec.
    Max Memory :      4784 MB
    Max Swap   :      7070 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
72
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 72
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 72: processing genes 6424 - 6514
Calculating significance of each gene.
Using projection method.
6424	GNAI1	1.308609e-01
6425	GNAI2	1
6426	GNAI3	6.659264e-01
6427	GNAL	6.460598e-01
6428	GNAO1	1
6429	GNAQ	1
6430	GNAS	1
6431	GNAT1	3.007111e-01
6432	GNAT2	1
6433	GNAT3	6.681752e-01
6434	GNAZ	2.603546e-01
6435	GNB1	7.814810e-01
6436	GNB1L	3.378426e-01
In gene GNB2 the following bins exceed PROBCAP:
    LUSC-46-3766-TP	categ 6	N = 1055    n = 1	mu =   6.69e-08
6437	GNB2	2.471674e-01
6438	GNB2L1	1
6439	GNB3	6.020794e-01
6440	GNB4	1.671260e-01
6441	GNB5	5.894654e-01
6442	GNE	7.415525e-01
6443	GNG10	1
6444	GNG11	1
6445	GNG12	9.324214e-02
6446	GNG13	1
6447	GNG2	1
6448	GNG3	1
6449	GNG4	4.171010e-02
6450	GNG5	1.739435e-01
6451	GNG7	1
6452	GNG8	1
6453	GNGT1	1
6454	GNGT2	1
6455	GNL1	7.466155e-01
6456	GNL2	9.046442e-01
6457	GNL3	1
6458	GNL3L	1
6459	GNLY	1
6460	GNMT	4.197753e-01
6461	GNPAT	7.252322e-01
6462	GNPDA1	1
6463	GNPDA2	1.726184e-02
6464	GNPNAT1	1
6465	GNPTAB	8.694658e-01
6466	GNPTG	1
6467	GNRH1	1
6468	GNRH2	1
6469	GNRHR	1
6470	GNS	8.907104e-01
6471	GOLGA1	9.027905e-01
6472	GOLGA2	7.349570e-01
6473	GOLGA2B	1
6474	GOLGA3	9.234888e-03
6475	GOLGA4	9.630002e-01
6476	GOLGA5	7.695354e-01
6477	GOLGA6A	3.731539e-01
6478	GOLGA6C	1
6479	GOLGA6D	1
6480	GOLGA7	1
6481	GOLGA7B	1
6482	GOLGB1	8.322004e-01
6483	GOLIM4	1.159882e-01
6484	GOLM1	1
6485	GOLPH3	3.441565e-01
6486	GOLPH3L	3.400442e-01
6487	GOLT1A	1
6488	GOLT1B	3.641334e-01
6489	GON4L	7.231231e-01
6490	GOPC	1
6491	GORAB	8.395445e-01
6492	GORASP1	8.621444e-01
6493	GORASP2	6.158423e-01
6494	GOSR1	5.133185e-01
6495	GOSR2	1
6496	GOT1	1
6497	GOT1L1	2.215742e-01
6498	GOT2	2.155849e-01
6499	GP2	9.861477e-04
6500	GP5	6.282093e-01
6501	GP6	6.091320e-01
6502	GP9	9.592026e-02
6503	GPA33	6.878899e-01
6504	GPAA1	9.452770e-01
6505	GPAM	8.959130e-01
6506	GPAT2	6.815252e-01
6507	GPATCH1	3.948194e-01
6508	GPATCH2	2.323376e-01
6509	GPATCH3	9.297389e-01
6510	GPATCH4	6.106366e-01
6511	GPATCH8	1
6512	GPBP1	4.838076e-01
6513	GPBP1L1	6.984230e-01
6514	GPC1	4.674675e-01
Done

Running MutSig 2:
Scatter job 72: processing genes 6424 - 6514
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
GOLGB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.196689e-02	ci left: 2.204982e-01	ci right 2.370601e-01	k: 2287	n:10000
Cons ci ratio: 6.333011e-02	ci left: 2.681458e-01	ci right 2.857843e-01	k: 2769	n:10000
KS ci ratio: 6.857181e-02	ci left: 2.377814e-01	ci right 2.547666e-01	k: 2462	n:10000
GOLGB1   10000 perm   4 sec   (2501 perm/sec)   p_kst 2.462000e-01   p_cons 2.769000e-01   p_joint 2.287000e-01

Outputting figure to mutsig2_images.part000000000072/GOLGB1.16_9864_10000_0.2462_0.2769_0.2287.png
                gene_name: GOLGB1
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 3 percent done.
GOLGA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.703343e-03	ci left: 9.590082e-01	ci right 9.665191e-01	k: 9629	n:10000
KS ci ratio: 6.772759e-03	ci left: 9.676262e-01	ci right 9.742956e-01	k: 9711	n:10000
GOLGA3   10000 perm   3 sec   (3384 perm/sec)   p_kst 9.711000e-01   p_cons 9.629000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000072/GOLGA3.13_4727_10000_0.9711_0.9629_1.png
                gene_name: GOLGA3
               theta_stop: 0.0077 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 5 percent done.
GP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.125218e-01	ci left: 2.939568e-02	ci right 3.647982e-02	k: 328	n:10000
Cons ci ratio: 5.111871e-02	ci left: 3.607251e-01	ci right 3.797506e-01	k: 3702	n:10000
KS ci ratio: 3.313660e-01	ci left: 1.151417e-02	ci right 1.617538e-02	k: 137	n:10000
GP2   10000 perm   2 sec   (4868 perm/sec)   p_kst 1.370000e-02   p_cons 3.702000e-01   p_joint 3.280000e-02

Joint ci ratio: 1.372254e-01	ci left: 3.650420e-02	ci right 4.193082e-02	k: 783	n:20000
Cons ci ratio: 3.570090e-02	ci left: 3.693302e-01	ci right 3.828058e-01	k: 7521	n:20000
KS ci ratio: 2.301256e-01	ci left: 1.265334e-02	ci right 1.599006e-02	k: 285	n:20000
GP2   20000 perm   5 sec   (4365 perm/sec)   p_kst 1.425000e-02   p_cons 3.760500e-01   p_joint 3.915000e-02

Joint ci ratio: 1.298848e-01	ci left: 2.754976e-02	ci right 3.140874e-02	k: 883	n:30000
Cons ci ratio: 2.920974e-02	ci left: 3.696171e-01	ci right 3.806071e-01	k: 11253	n:30000
KS ci ratio: 1.874555e-01	ci left: 1.301884e-02	ci right 1.574306e-02	k: 430	n:30000
GP2   30000 perm   7 sec   (4138 perm/sec)   p_kst 1.433333e-02   p_cons 3.751000e-01   p_joint 2.943333e-02

Joint ci ratio: 1.125660e-01	ci left: 2.776630e-02	ci right 3.110248e-02	k: 1176	n:40000
Cons ci ratio: 2.542137e-02	ci left: 3.680582e-01	ci right 3.775603e-01	k: 14912	n:40000
KS ci ratio: 1.633056e-01	ci left: 1.303941e-02	ci right 1.538189e-02	k: 567	n:40000
GP2   40000 perm   10 sec   (4047 perm/sec)   p_kst 1.417500e-02   p_cons 3.728000e-01   p_joint 2.940000e-02

Joint ci ratio: 1.022044e-01	ci left: 2.711743e-02	ci right 3.005764e-02	k: 1428	n:50000
Cons ci ratio: 2.164172e-02	ci left: 3.918890e-01	ci right 4.004830e-01	k: 19809	n:50000
KS ci ratio: 1.454432e-01	ci left: 1.327762e-02	ci right 1.537932e-02	k: 715	n:50000
GP2   50000 perm   13 sec   (3964 perm/sec)   p_kst 1.430000e-02   p_cons 3.961800e-01   p_joint 2.856000e-02

Joint ci ratio: 9.926334e-02	ci left: 2.407441e-02	ci right 2.660512e-02	k: 1519	n:60000
Cons ci ratio: 1.973683e-02	ci left: 3.927324e-01	ci right 4.005776e-01	k: 23799	n:60000
KS ci ratio: 1.326302e-01	ci left: 1.339748e-02	ci right 1.531658e-02	k: 860	n:60000
GP2   60000 perm   15 sec   (3878 perm/sec)   p_kst 1.433333e-02   p_cons 3.966500e-01   p_joint 2.531667e-02

Joint ci ratio: 9.099166e-02	ci left: 2.465207e-02	ci right 2.701603e-02	k: 1807	n:70000
Cons ci ratio: 1.828839e-02	ci left: 3.926167e-01	ci right 3.998776e-01	k: 27737	n:70000
KS ci ratio: 1.247271e-01	ci left: 1.304576e-02	ci right 1.479488e-02	k: 973	n:70000
GP2   70000 perm   18 sec   (3811 perm/sec)   p_kst 1.390000e-02   p_cons 3.962429e-01   p_joint 2.581429e-02

Joint ci ratio: 7.708529e-02	ci left: 3.010415e-02	ci right 3.252999e-02	k: 2504	n:80000
Cons ci ratio: 1.711284e-02	ci left: 3.926960e-01	ci right 3.994866e-01	k: 31687	n:80000
KS ci ratio: 1.161512e-01	ci left: 1.322154e-02	ci right 1.486398e-02	k: 1122	n:80000
GP2   80000 perm   21 sec   (3739 perm/sec)   p_kst 1.402500e-02   p_cons 3.960875e-01   p_joint 3.130000e-02

Joint ci ratio: 7.767131e-02	ci left: 2.645219e-02	ci right 2.860064e-02	k: 2476	n:90000
Cons ci ratio: 1.615439e-02	ci left: 3.922923e-01	ci right 3.986922e-01	k: 35594	n:90000
KS ci ratio: 1.105956e-01	ci left: 1.300475e-02	ci right 1.453794e-02	k: 1238	n:90000
GP2   90000 perm   24 sec   (3683 perm/sec)   p_kst 1.375556e-02   p_cons 3.954889e-01   p_joint 2.751111e-02

Joint ci ratio: 6.964196e-02	ci left: 2.963946e-02	ci right 3.178787e-02	k: 3070	n:100000
Cons ci ratio: 1.533886e-02	ci left: 3.920381e-01	ci right 3.981080e-01	k: 39507	n:100000
KS ci ratio: 1.043707e-01	ci left: 1.318349e-02	ci right 1.464490e-02	k: 1390	n:100000
GP2   100000 perm   28 sec   (3624 perm/sec)   p_kst 1.390000e-02   p_cons 3.950700e-01   p_joint 3.070000e-02

Joint ci ratio: 6.636152e-02	ci left: 2.972421e-02	ci right 3.177336e-02	k: 3381	n:110000
Cons ci ratio: 1.460275e-02	ci left: 3.929084e-01	ci right 3.986971e-01	k: 43538	n:110000
KS ci ratio: 9.964910e-02	ci left: 1.318096e-02	ci right 1.457212e-02	k: 1525	n:110000
GP2   110000 perm   31 sec   (3572 perm/sec)   p_kst 1.386364e-02   p_cons 3.958000e-01   p_joint 3.073636e-02

Outputting figure to mutsig2_images.part000000000072/GP2.11_1658_110000_0.013864_0.3958_0.030736.png
                gene_name: GP2
               theta_stop: 0.100 
                    nperm: 110000 
                     p_ks: 0.014 
        ci_ks_bounds_left: 0.013 
       ci_ks_bounds_right: 0.015 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.031 
     ci_joint_bounds_left: 0.030 
    ci_joint_bounds_right: 0.032 

Current progress: 8 percent done.
GON4L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.200320e-02	ci left: 5.903202e-01	ci right 6.096215e-01	k: 6000	n:10000
Cons ci ratio: 4.866711e-02	ci left: 3.838077e-01	ci right 4.030544e-01	k: 3934	n:10000
KS ci ratio: 3.549612e-02	ci left: 5.395849e-01	ci right 5.591863e-01	k: 5494	n:10000
GON4L   10000 perm   3 sec   (3359 perm/sec)   p_kst 5.494000e-01   p_cons 3.934000e-01   p_joint 6.000000e-01

Outputting figure to mutsig2_images.part000000000072/GON4L.9_6964_10000_0.5494_0.3934_0.6.png
                gene_name: GON4L
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 11 percent done.
GNAS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.367603e-02	ci left: 7.239092e-01	ci right 7.413551e-01	k: 7327	n:10000
Cons ci ratio: 4.654243e-02	ci left: 4.052191e-01	ci right 4.246305e-01	k: 4149	n:10000
KS ci ratio: 2.918723e-02	ci left: 6.338206e-01	ci right 6.526959e-01	k: 6433	n:10000
GNAS   10000 perm   2 sec   (4405 perm/sec)   p_kst 6.433000e-01   p_cons 4.149000e-01   p_joint 7.327000e-01

Outputting figure to mutsig2_images.part000000000072/GNAS.6_4054_10000_0.6433_0.4149_0.7327.png
                gene_name: GNAS
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 13 percent done.
GOLIM4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.380585e-01	ci left: 6.942795e-02	ci right 7.982148e-02	k: 745	n:10000
Cons ci ratio: 5.215104e-03	ci left: 9.799492e-01	ci right 9.851642e-01	k: 9827	n:10000
KS ci ratio: 2.847290e-01	ci left: 1.594989e-02	ci right 2.133572e-02	k: 185	n:10000
GOLIM4   10000 perm   2 sec   (4901 perm/sec)   p_kst 1.850000e-02   p_cons 9.827000e-01   p_joint 7.450000e-02

Joint ci ratio: 1.110964e-01	ci left: 5.533552e-02	ci right 6.189353e-02	k: 1171	n:20000
Cons ci ratio: 3.562056e-03	ci left: 9.819533e-01	ci right 9.855040e-01	k: 19676	n:20000
KS ci ratio: 2.018924e-01	ci left: 1.663022e-02	ci right 2.041161e-02	k: 369	n:20000
GOLIM4   20000 perm   5 sec   (4440 perm/sec)   p_kst 1.845000e-02   p_cons 9.838000e-01   p_joint 5.855000e-02

Joint ci ratio: 9.366089e-02	ci left: 5.257711e-02	ci right 5.777613e-02	k: 1654	n:30000
Cons ci ratio: 2.795799e-03	ci left: 9.835599e-01	ci right 9.863450e-01	k: 29550	n:30000
KS ci ratio: 1.702378e-01	ci left: 1.588671e-02	ci right 1.887447e-02	k: 520	n:30000
GOLIM4   30000 perm   7 sec   (4265 perm/sec)   p_kst 1.733333e-02   p_cons 9.850000e-01   p_joint 5.513333e-02

Joint ci ratio: 8.653209e-02	ci left: 4.668446e-02	ci right 5.093134e-02	k: 1951	n:40000
Cons ci ratio: 2.418557e-03	ci left: 9.837864e-01	ci right 9.861924e-01	k: 39401	n:40000
KS ci ratio: 1.458017e-01	ci left: 1.645451e-02	ci right 1.906617e-02	k: 709	n:40000
GOLIM4   40000 perm   10 sec   (4148 perm/sec)   p_kst 1.772500e-02   p_cons 9.850250e-01   p_joint 4.877500e-02

Joint ci ratio: 7.766491e-02	ci left: 4.659405e-02	ci right 5.037859e-02	k: 2423	n:50000
Cons ci ratio: 2.170559e-03	ci left: 9.838132e-01	ci right 9.859700e-01	k: 49246	n:50000
KS ci ratio: 1.372172e-01	ci left: 1.495700e-02	ci right 1.717970e-02	k: 802	n:50000
GOLIM4   50000 perm   12 sec   (4052 perm/sec)   p_kst 1.604000e-02   p_cons 9.849200e-01   p_joint 4.846000e-02

Joint ci ratio: 7.627241e-02	ci left: 4.055609e-02	ci right 4.378838e-02	k: 2529	n:60000
Cons ci ratio: 1.971441e-03	ci left: 9.840640e-01	ci right 9.860220e-01	k: 59104	n:60000
KS ci ratio: 1.248411e-01	ci left: 1.515651e-02	ci right 1.719068e-02	k: 969	n:60000
GOLIM4   60000 perm   15 sec   (3965 perm/sec)   p_kst 1.615000e-02   p_cons 9.850667e-01   p_joint 4.215000e-02

Joint ci ratio: 6.510247e-02	ci left: 4.763746e-02	ci right 5.085717e-02	k: 3446	n:70000
Cons ci ratio: 1.978129e-03	ci left: 9.815012e-01	ci right 9.834585e-01	k: 68775	n:70000
KS ci ratio: 1.149455e-01	ci left: 1.540266e-02	ci right 1.729488e-02	k: 1143	n:70000
GOLIM4   70000 perm   18 sec   (3886 perm/sec)   p_kst 1.632857e-02   p_cons 9.825000e-01   p_joint 4.922857e-02

Joint ci ratio: 6.274965e-02	ci left: 4.505110e-02	ci right 4.798190e-02	k: 3720	n:80000
Cons ci ratio: 1.854311e-03	ci left: 9.814905e-01	ci right 9.833243e-01	k: 78594	n:80000
KS ci ratio: 1.077494e-01	ci left: 1.539736e-02	ci right 1.716297e-02	k: 1301	n:80000
GOLIM4   80000 perm   21 sec   (3796 perm/sec)   p_kst 1.626250e-02   p_cons 9.824250e-01   p_joint 4.650000e-02

Joint ci ratio: 6.256952e-02	ci left: 4.047984e-02	ci right 4.310536e-02	k: 3760	n:90000
Cons ci ratio: 1.755631e-03	ci left: 9.813945e-01	ci right 9.831298e-01	k: 88405	n:90000
KS ci ratio: 1.006740e-01	ci left: 1.573198e-02	ci right 1.741050e-02	k: 1490	n:90000
GOLIM4   90000 perm   24 sec   (3732 perm/sec)   p_kst 1.655556e-02   p_cons 9.822778e-01   p_joint 4.177778e-02

Joint ci ratio: 5.583765e-02	ci left: 4.565696e-02	ci right 4.828940e-02	k: 4696	n:100000
Cons ci ratio: 1.688188e-03	ci left: 9.809524e-01	ci right 9.826195e-01	k: 98180	n:100000
KS ci ratio: 9.538104e-02	ci left: 1.581715e-02	ci right 1.741107e-02	k: 1660	n:100000
GOLIM4   100000 perm   27 sec   (3672 perm/sec)   p_kst 1.660000e-02   p_cons 9.818000e-01   p_joint 4.696000e-02

Outputting figure to mutsig2_images.part000000000072/GOLIM4.6_2155_100000_0.0166_0.9818_0.04696.png
                gene_name: GOLIM4
               theta_stop: 0.095 
                    nperm: 100000 
                     p_ks: 0.017 
        ci_ks_bounds_left: 0.016 
       ci_ks_bounds_right: 0.017 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.047 
     ci_joint_bounds_left: 0.046 
    ci_joint_bounds_right: 0.048 

Current progress: 16 percent done.
GPATCH8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.109754e-02	ci left: 6.040749e-01	ci right 6.232588e-01	k: 6137	n:10000
Cons ci ratio: 2.035729e-02	ci left: 7.794504e-01	ci right 7.955817e-01	k: 7876	n:10000
KS ci ratio: 4.500499e-02	ci left: 4.215643e-01	ci right 4.410757e-01	k: 4313	n:10000
GPATCH8   10000 perm   2 sec   (4334 perm/sec)   p_kst 4.313000e-01   p_cons 7.876000e-01   p_joint 6.137000e-01

Outputting figure to mutsig2_images.part000000000072/GPATCH8.6_4541_10000_0.4313_0.7876_0.6137.png
                gene_name: GPATCH8
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 18 percent done.
GOLGA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.406368e-02	ci left: 4.319352e-01	ci right 4.514988e-01	k: 4417	n:10000
KS ci ratio: 1.185996e-02	ci left: 9.105972e-01	ci right 9.215590e-01	k: 9162	n:10000
GOLGA4   10000 perm   3 sec   (3409 perm/sec)   p_kst 9.162000e-01   p_cons 4.417000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000072/GOLGA4.5_6883_10000_0.9162_0.4417_1.png
                gene_name: GOLGA4
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 21 percent done.
GPATCH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.620135e-01	ci left: 5.080410e-02	ci right 5.985714e-02	k: 552	n:10000
Cons ci ratio: 5.065070e-02	ci left: 3.650016e-01	ci right 3.840715e-01	k: 3745	n:10000
KS ci ratio: 2.025482e-01	ci left: 3.243447e-02	ci right 3.983893e-02	k: 360	n:10000
GPATCH1   10000 perm   2 sec   (5064 perm/sec)   p_kst 3.600000e-02   p_cons 3.745000e-01   p_joint 5.520000e-02

Joint ci ratio: 9.222233e-02	ci left: 7.901657e-02	ci right 8.670521e-02	k: 1656	n:20000
Cons ci ratio: 3.712725e-02	ci left: 3.512025e-01	ci right 3.645389e-01	k: 7157	n:20000
KS ci ratio: 1.385177e-01	ci left: 3.582747e-02	ci right 4.120776e-02	k: 769	n:20000
GPATCH1   20000 perm   4 sec   (4495 perm/sec)   p_kst 3.845000e-02   p_cons 3.578500e-01   p_joint 8.280000e-02

Joint ci ratio: 9.503614e-02	ci left: 5.111061e-02	ci right 5.624293e-02	k: 1609	n:30000
Cons ci ratio: 3.023307e-02	ci left: 3.536686e-01	ci right 3.645587e-01	k: 10773	n:30000
KS ci ratio: 1.169449e-01	ci left: 3.398512e-02	ci right 3.823866e-02	k: 1082	n:30000
GPATCH1   30000 perm   7 sec   (4275 perm/sec)   p_kst 3.606667e-02   p_cons 3.591000e-01   p_joint 5.363333e-02

Joint ci ratio: 9.297355e-02	ci left: 4.056833e-02	ci right 4.454842e-02	k: 1701	n:40000
Cons ci ratio: 2.624861e-02	ci left: 3.532499e-01	ci right 3.626707e-01	k: 14318	n:40000
KS ci ratio: 1.013504e-01	ci left: 3.422003e-02	ci right 3.789772e-02	k: 1441	n:40000
GPATCH1   40000 perm   10 sec   (4146 perm/sec)   p_kst 3.602500e-02   p_cons 3.579500e-01   p_joint 4.252500e-02

Joint ci ratio: 7.649474e-02	ci left: 4.798801e-02	ci right 5.182446e-02	k: 2494	n:50000
Cons ci ratio: 2.343029e-02	ci left: 3.546739e-01	ci right 3.631025e-01	k: 17944	n:50000
KS ci ratio: 9.032639e-02	ci left: 3.465799e-02	ci right 3.795612e-02	k: 1814	n:50000
GPATCH1   50000 perm   12 sec   (4042 perm/sec)   p_kst 3.628000e-02   p_cons 3.588800e-01   p_joint 4.988000e-02

Outputting figure to mutsig2_images.part000000000072/GPATCH1.5_2876_50000_0.03628_0.35888_0.04988.png
                gene_name: GPATCH1
               theta_stop: 0.090 
                    nperm: 50000 
                     p_ks: 0.036 
        ci_ks_bounds_left: 0.035 
       ci_ks_bounds_right: 0.038 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.050 
     ci_joint_bounds_left: 0.048 
    ci_joint_bounds_right: 0.052 

Current progress: 24 percent done.
GNPDA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.626109e-02	ci left: 6.810325e-01	ci right 6.992566e-01	k: 6902	n:10000
KS ci ratio: 1.753445e-02	ci left: 8.258483e-01	ci right 8.405571e-01	k: 8333	n:10000
GNPDA2   10000 perm   2 sec   (5954 perm/sec)   p_kst 8.333000e-01   p_cons 6.902000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000072/GNPDA2.4_855_10000_0.8333_0.6902_1.png
                gene_name: GNPDA2
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 26 percent done.
GP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.740610e-02	ci left: 3.963535e-01	ci right 4.157013e-01	k: 4060	n:10000
Cons ci ratio: 1.617783e-02	ci left: 8.474359e-01	ci right 8.613569e-01	k: 8545	n:10000
KS ci ratio: 6.632113e-02	ci left: 2.502371e-01	ci right 2.675036e-01	k: 2588	n:10000
GP5   10000 perm   2 sec   (5621 perm/sec)   p_kst 2.588000e-01   p_cons 8.545000e-01   p_joint 4.060000e-01

Outputting figure to mutsig2_images.part000000000072/GP5.4_1687_10000_0.2588_0.8545_0.406.png
                gene_name: GP5
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 29 percent done.
GPATCH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.568038e-02	ci left: 8.551867e-01	ci right 8.688017e-01	k: 8621	n:10000
KS ci ratio: 2.027820e-02	ci left: 7.807680e-01	ci right 7.968634e-01	k: 7889	n:10000
GPATCH2   10000 perm   2 sec   (6125 perm/sec)   p_kst 7.889000e-01   p_cons 8.621000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000072/GPATCH2.4_1627_10000_0.7889_0.8621_1.png
                gene_name: GPATCH2
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 32 percent done.
GNAI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.937057e-01	ci left: 1.492852e-02	ci right 2.015795e-02	k: 174	n:10000
Cons ci ratio: 2.140007e-02	ci left: 7.620288e-01	ci right 7.786135e-01	k: 7704	n:10000
KS ci ratio: 2.937057e-01	ci left: 1.492852e-02	ci right 2.015795e-02	k: 174	n:10000
GNAI1   10000 perm   2 sec   (6513 perm/sec)   p_kst 1.740000e-02   p_cons 7.704000e-01   p_joint 1.740000e-02

Joint ci ratio: 1.332927e-01	ci left: 3.868094e-02	ci right 4.425337e-02	k: 828	n:20000
Cons ci ratio: 1.515777e-02	ci left: 7.639019e-01	ci right 7.756196e-01	k: 15396	n:20000
KS ci ratio: 2.082928e-01	ci left: 1.558582e-02	ci right 1.925640e-02	k: 347	n:20000
GNAI1   20000 perm   4 sec   (5680 perm/sec)   p_kst 1.735000e-02   p_cons 7.698000e-01   p_joint 4.140000e-02

Joint ci ratio: 1.741925e-01	ci left: 1.515259e-02	ci right 1.807544e-02	k: 497	n:30000
Cons ci ratio: 1.237277e-02	ci left: 7.650945e-01	ci right 7.746532e-01	k: 23097	n:30000
KS ci ratio: 1.741925e-01	ci left: 1.515259e-02	ci right 1.807544e-02	k: 497	n:30000
GNAI1   30000 perm   6 sec   (5372 perm/sec)   p_kst 1.656667e-02   p_cons 7.699000e-01   p_joint 1.656667e-02

Joint ci ratio: 1.326191e-01	ci left: 1.995578e-02	ci right 2.281429e-02	k: 854	n:40000
Cons ci ratio: 1.072874e-02	ci left: 7.652905e-01	ci right 7.735704e-01	k: 30778	n:40000
KS ci ratio: 1.478284e-01	ci left: 1.599668e-02	ci right 1.857408e-02	k: 690	n:40000
GNAI1   40000 perm   8 sec   (5180 perm/sec)   p_kst 1.725000e-02   p_cons 7.694500e-01   p_joint 2.135000e-02

Joint ci ratio: 1.283987e-01	ci left: 1.712382e-02	ci right 1.949257e-02	k: 914	n:50000
Cons ci ratio: 9.321747e-03	ci left: 7.759204e-01	ci right 7.832071e-01	k: 38979	n:50000
KS ci ratio: 1.283987e-01	ci left: 1.712382e-02	ci right 1.949257e-02	k: 914	n:50000
GNAI1   50000 perm   10 sec   (5029 perm/sec)   p_kst 1.828000e-02   p_cons 7.795800e-01   p_joint 1.828000e-02

Joint ci ratio: 1.177040e-01	ci left: 1.708068e-02	ci right 1.923295e-02	k: 1088	n:60000
Cons ci ratio: 8.494196e-03	ci left: 7.768646e-01	ci right 7.835082e-01	k: 46812	n:60000
KS ci ratio: 1.177040e-01	ci left: 1.708068e-02	ci right 1.923295e-02	k: 1088	n:60000
GNAI1   60000 perm   12 sec   (4874 perm/sec)   p_kst 1.813333e-02   p_cons 7.802000e-01   p_joint 1.813333e-02

Joint ci ratio: 1.094343e-01	ci left: 1.701408e-02	ci right 1.899759e-02	k: 1259	n:70000
Cons ci ratio: 7.872610e-03	ci left: 7.767403e-01	ci right 7.828936e-01	k: 54588	n:70000
KS ci ratio: 1.094343e-01	ci left: 1.701408e-02	ci right 1.899759e-02	k: 1259	n:70000
GNAI1   70000 perm   15 sec   (4744 perm/sec)   p_kst 1.798571e-02   p_cons 7.798286e-01   p_joint 1.798571e-02

Joint ci ratio: 7.581363e-02	ci left: 3.111017e-02	ci right 3.357390e-02	k: 2586	n:80000
Cons ci ratio: 7.370125e-03	ci left: 7.766610e-01	ci right 7.824187e-01	k: 62364	n:80000
KS ci ratio: 1.030611e-01	ci left: 1.684629e-02	ci right 1.868892e-02	k: 1420	n:80000
GNAI1   80000 perm   17 sec   (4635 perm/sec)   p_kst 1.775000e-02   p_cons 7.795500e-01   p_joint 3.232500e-02

Joint ci ratio: 6.501660e-02	ci left: 3.755858e-02	ci right 4.009347e-02	k: 3493	n:90000
Cons ci ratio: 6.959512e-03	ci left: 7.762859e-01	ci right 7.817184e-01	k: 70111	n:90000
KS ci ratio: 9.746612e-02	ci left: 1.679433e-02	ci right 1.852585e-02	k: 1588	n:90000
GNAI1   90000 perm   20 sec   (4522 perm/sec)   p_kst 1.764444e-02   p_cons 7.790111e-01   p_joint 3.881111e-02

Outputting figure to mutsig2_images.part000000000072/GNAI1.3_1097_90000_0.017644_0.77901_0.038811.png
                gene_name: GNAI1
               theta_stop: 0.097 
                    nperm: 90000 
                     p_ks: 0.018 
        ci_ks_bounds_left: 0.017 
       ci_ks_bounds_right: 0.019 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.039 
     ci_joint_bounds_left: 0.038 
    ci_joint_bounds_right: 0.040 

Current progress: 34 percent done.
GNAZ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.170998e-02	ci left: 2.785431e-01	ci right 2.963808e-01	k: 2874	n:10000
Cons ci ratio: 2.475385e-02	ci left: 7.059398e-01	ci right 7.237349e-01	k: 7149	n:10000
KS ci ratio: 9.148904e-02	ci left: 1.479580e-01	ci right 1.622435e-01	k: 1550	n:10000
GNAZ   10000 perm   1 sec   (6777 perm/sec)   p_kst 1.550000e-01   p_cons 7.149000e-01   p_joint 2.874000e-01

Outputting figure to mutsig2_images.part000000000072/GNAZ.3_1076_10000_0.155_0.7149_0.2874.png
                gene_name: GNAZ
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 37 percent done.
GNB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.753709e-03	ci left: 9.830684e-01	ci right 9.878427e-01	k: 9856	n:10000
Cons ci ratio: 2.755871e-02	ci left: 6.598801e-01	ci right 6.784213e-01	k: 6692	n:10000
KS ci ratio: 3.600075e-02	ci left: 5.325743e-01	ci right 5.522010e-01	k: 5424	n:10000
GNB4   10000 perm   2 sec   (5811 perm/sec)   p_kst 5.424000e-01   p_cons 6.692000e-01   p_joint 9.856000e-01

Outputting figure to mutsig2_images.part000000000072/GNB4.3_1059_10000_0.5424_0.6692_0.9856.png
                gene_name: GNB4
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 39 percent done.
GNL3L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.723193e-02	ci left: 2.450955e-01	ci right 2.622482e-01	k: 2536	n:10000
Cons ci ratio: 7.126047e-02	ci left: 2.239532e-01	ci right 2.406030e-01	k: 2322	n:10000
KS ci ratio: 5.158221e-02	ci left: 3.565488e-01	ci right 3.755293e-01	k: 3660	n:10000
GNL3L   10000 perm   2 sec   (5934 perm/sec)   p_kst 3.660000e-01   p_cons 2.322000e-01   p_joint 2.536000e-01

Outputting figure to mutsig2_images.part000000000072/GNL3L.3_1809_10000_0.366_0.2322_0.2536.png
                gene_name: GNL3L
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 42 percent done.
GNPTAB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.636922e-02	ci left: 1.633724e-01	ci right 1.782199e-01	k: 1707	n:10000
Cons ci ratio: 1.071875e-02	ci left: 9.253392e-01	ci right 9.354083e-01	k: 9305	n:10000
KS ci ratio: 1.391704e-01	ci left: 6.836336e-02	ci right 7.868673e-02	k: 734	n:10000
GNPTAB   10000 perm   2 sec   (4689 perm/sec)   p_kst 7.340000e-02   p_cons 9.305000e-01   p_joint 1.707000e-01

Joint ci ratio: 6.135495e-02	ci left: 1.642741e-01	ci right 1.747222e-01	k: 3389	n:20000
Cons ci ratio: 7.880396e-03	ci left: 9.215181e-01	ci right 9.288577e-01	k: 18505	n:20000
KS ci ratio: 9.716747e-02	ci left: 7.158212e-02	ci right 7.894193e-02	k: 1504	n:20000
GNPTAB   20000 perm   5 sec   (4210 perm/sec)   p_kst 7.520000e-02   p_cons 9.252500e-01   p_joint 1.694500e-01

Outputting figure to mutsig2_images.part000000000072/GNPTAB.3_3855_20000_0.0752_0.92525_0.16945.png
                gene_name: GNPTAB
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.075 
        ci_ks_bounds_left: 0.072 
       ci_ks_bounds_right: 0.079 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 45 percent done.
GOLGA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.444763e-02	ci left: 5.544138e-01	ci right 5.739488e-01	k: 5642	n:10000
KS ci ratio: 5.395232e-03	ci left: 9.786643e-01	ci right 9.840501e-01	k: 9815	n:10000
GOLGA2   10000 perm   2 sec   (5214 perm/sec)   p_kst 9.815000e-01   p_cons 5.642000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000072/GOLGA2.3_3113_10000_0.9815_0.5642_1.png
                gene_name: GOLGA2
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 47 percent done.
GOT1L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.991394e-01	ci left: 3.357607e-02	ci right 4.109654e-02	k: 372	n:10000
Cons ci ratio: 5.529567e-01	ci left: 3.627180e-03	ci right 6.472945e-03	k: 49	n:10000
KS ci ratio: 4.619910e-02	ci left: 4.088062e-01	ci right 4.282413e-01	k: 4185	n:10000
GOT1L1   10000 perm   2 sec   (6357 perm/sec)   p_kst 4.185000e-01   p_cons 4.900000e-03   p_joint 3.720000e-02

Joint ci ratio: 1.863283e-01	ci left: 1.963004e-02	ci right 2.371068e-02	k: 432	n:20000
Cons ci ratio: 4.193426e-01	ci left: 3.440841e-03	ci right 5.307780e-03	k: 86	n:20000
KS ci ratio: 3.312113e-02	ci left: 4.050172e-01	ci right 4.187084e-01	k: 8237	n:20000
GOT1L1   20000 perm   4 sec   (5554 perm/sec)   p_kst 4.118500e-01   p_cons 4.300000e-03   p_joint 2.160000e-02

Joint ci ratio: 1.705713e-01	ci left: 1.582285e-02	ci right 1.880502e-02	k: 518	n:30000
Cons ci ratio: 3.341371e-01	ci left: 3.804809e-03	ci right 5.360201e-03	k: 136	n:30000
KS ci ratio: 2.717386e-02	ci left: 4.039611e-01	ci right 4.151231e-01	k: 12286	n:30000
GOT1L1   30000 perm   6 sec   (5239 perm/sec)   p_kst 4.095333e-01   p_cons 4.533333e-03   p_joint 1.726667e-02

Joint ci ratio: 1.245242e-01	ci left: 2.266770e-02	ci right 2.570191e-02	k: 966	n:40000
Cons ci ratio: 2.822184e-01	ci left: 4.123096e-03	ci right 5.500309e-03	k: 191	n:40000
KS ci ratio: 2.351701e-02	ci left: 4.050495e-01	ci right 4.147136e-01	k: 16395	n:40000
GOT1L1   40000 perm   8 sec   (5048 perm/sec)   p_kst 4.098750e-01   p_cons 4.775000e-03   p_joint 2.415000e-02

Joint ci ratio: 1.416761e-01	ci left: 1.401069e-02	ci right 1.616614e-02	k: 753	n:50000
Cons ci ratio: 2.562061e-01	ci left: 4.063232e-03	ci right 5.275381e-03	k: 232	n:50000
KS ci ratio: 2.105860e-02	ci left: 4.050054e-01	ci right 4.136451e-01	k: 20466	n:50000
GOT1L1   50000 perm   10 sec   (4913 perm/sec)   p_kst 4.093200e-01   p_cons 4.640000e-03   p_joint 1.506000e-02

Joint ci ratio: 1.461367e-01	ci left: 1.098343e-02	ci right 1.273094e-02	k: 710	n:60000
Cons ci ratio: 2.384683e-01	ci left: 3.948849e-03	ci right 5.033272e-03	k: 268	n:60000
KS ci ratio: 1.925388e-02	ci left: 4.046295e-01	ci right 4.125126e-01	k: 24514	n:60000
GOT1L1   60000 perm   12 sec   (4801 perm/sec)   p_kst 4.085667e-01   p_cons 4.466667e-03   p_joint 1.183333e-02

Joint ci ratio: 1.030018e-01	ci left: 1.922630e-02	ci right 2.132802e-02	k: 1418	n:70000
Cons ci ratio: 2.239674e-01	ci left: 3.869229e-03	ci right 4.858263e-03	k: 304	n:70000
KS ci ratio: 1.785666e-02	ci left: 4.040849e-01	ci right 4.113798e-01	k: 28541	n:70000
GOT1L1   70000 perm   15 sec   (4698 perm/sec)   p_kst 4.077286e-01   p_cons 4.342857e-03   p_joint 2.025714e-02

Joint ci ratio: 8.788955e-02	ci left: 2.319510e-02	ci right 2.533959e-02	k: 1940	n:80000
Cons ci ratio: 2.127677e-01	ci left: 3.775506e-03	ci right 4.686025e-03	k: 337	n:80000
KS ci ratio: 1.670399e-02	ci left: 4.043044e-01	ci right 4.111273e-01	k: 32617	n:80000
GOT1L1   80000 perm   17 sec   (4584 perm/sec)   p_kst 4.077125e-01   p_cons 4.212500e-03   p_joint 2.425000e-02

Joint ci ratio: 7.948827e-02	ci left: 2.526425e-02	ci right 2.736643e-02	k: 2367	n:90000
Cons ci ratio: 2.001375e-01	ci left: 3.819647e-03	ci right 4.679456e-03	k: 381	n:90000
KS ci ratio: 1.578250e-02	ci left: 4.034661e-01	ci right 4.098955e-01	k: 36601	n:90000
GOT1L1   90000 perm   20 sec   (4478 perm/sec)   p_kst 4.066778e-01   p_cons 4.233333e-03   p_joint 2.630000e-02

Joint ci ratio: 7.333312e-02	ci left: 2.676031e-02	ci right 2.880720e-02	k: 2777	n:100000
Cons ci ratio: 1.899671e-01	ci left: 3.837185e-03	ci right 4.651983e-03	k: 423	n:100000
KS ci ratio: 1.495396e-02	ci left: 4.042325e-01	ci right 4.103329e-01	k: 40728	n:100000
GOT1L1   100000 perm   23 sec   (4386 perm/sec)   p_kst 4.072800e-01   p_cons 4.230000e-03   p_joint 2.777000e-02

Joint ci ratio: 7.346904e-02	ci left: 2.429963e-02	ci right 2.616188e-02	k: 2774	n:110000
Cons ci ratio: 1.817932e-01	ci left: 3.826401e-03	ci right 4.600099e-03	k: 462	n:110000
KS ci ratio: 1.425318e-02	ci left: 4.045397e-01	ci right 4.103561e-01	k: 44819	n:110000
GOT1L1   110000 perm   26 sec   (4302 perm/sec)   p_kst 4.074455e-01   p_cons 4.200000e-03   p_joint 2.521818e-02

Joint ci ratio: 7.321137e-02	ci left: 2.247840e-02	ci right 2.419475e-02	k: 2799	n:120000
Cons ci ratio: 1.745911e-01	ci left: 3.818041e-03	ci right 4.556237e-03	k: 501	n:120000
KS ci ratio: 1.364910e-02	ci left: 4.045681e-01	ci right 4.101364e-01	k: 48882	n:120000
GOT1L1   120000 perm   28 sec   (4217 perm/sec)   p_kst 4.073500e-01   p_cons 4.175000e-03   p_joint 2.332500e-02

Joint ci ratio: 6.778925e-02	ci left: 2.422616e-02	ci right 2.593358e-02	k: 3259	n:130000
Cons ci ratio: 1.678710e-01	ci left: 3.826218e-03	ci right 4.534641e-03	k: 542	n:130000
KS ci ratio: 1.309726e-02	ci left: 4.052805e-01	ci right 4.106312e-01	k: 53034	n:130000
GOT1L1   130000 perm   32 sec   (4123 perm/sec)   p_kst 4.079538e-01   p_cons 4.169231e-03   p_joint 2.506923e-02

Joint ci ratio: 7.030847e-02	ci left: 2.095717e-02	ci right 2.249130e-02	k: 3040	n:140000
Cons ci ratio: 1.611801e-01	ci left: 3.867970e-03	ci right 4.552815e-03	k: 588	n:140000
KS ci ratio: 1.261516e-02	ci left: 4.055952e-01	ci right 4.107514e-01	k: 57144	n:140000
GOT1L1   140000 perm   35 sec   (4056 perm/sec)   p_kst 4.081714e-01   p_cons 4.200000e-03   p_joint 2.171429e-02

Joint ci ratio: 7.477225e-02	ci left: 1.732009e-02	ci right 1.867196e-02	k: 2698	n:150000
Cons ci ratio: 1.538974e-01	ci left: 3.975147e-03	ci right 4.644236e-03	k: 645	n:150000
KS ci ratio: 1.219107e-02	ci left: 4.055380e-01	ci right 4.105189e-01	k: 61204	n:150000
GOT1L1   150000 perm   38 sec   (3988 perm/sec)   p_kst 4.080267e-01   p_cons 4.300000e-03   p_joint 1.798667e-02

Joint ci ratio: 7.257698e-02	ci left: 1.725595e-02	ci right 1.856160e-02	k: 2864	n:160000
Cons ci ratio: 1.488010e-01	ci left: 3.997304e-03	ci right 4.645860e-03	k: 690	n:160000
KS ci ratio: 1.180064e-02	ci left: 4.057528e-01	ci right 4.105755e-01	k: 65306	n:160000
GOT1L1   160000 perm   41 sec   (3920 perm/sec)   p_kst 4.081625e-01   p_cons 4.312500e-03   p_joint 1.790000e-02

Joint ci ratio: 7.129834e-02	ci left: 1.684730e-02	ci right 1.809864e-02	k: 2969	n:170000
Cons ci ratio: 1.445747e-01	ci left: 3.994493e-03	ci right 4.622596e-03	k: 731	n:170000
KS ci ratio: 1.144826e-02	ci left: 4.058270e-01	ci right 4.105056e-01	k: 69388	n:170000
GOT1L1   170000 perm   44 sec   (3860 perm/sec)   p_kst 4.081647e-01   p_cons 4.300000e-03   p_joint 1.746471e-02

Joint ci ratio: 7.065923e-02	ci left: 1.621674e-02	ci right 1.741000e-02	k: 3025	n:180000
Cons ci ratio: 1.406891e-01	ci left: 3.992227e-03	ci right 4.601686e-03	k: 772	n:180000
KS ci ratio: 1.112068e-02	ci left: 4.061113e-01	ci right 4.106583e-01	k: 73509	n:180000
GOT1L1   180000 perm   47 sec   (3797 perm/sec)   p_kst 4.083833e-01   p_cons 4.288889e-03   p_joint 1.680556e-02

Joint ci ratio: 7.761533e-02	ci left: 1.273292e-02	ci right 1.376622e-02	k: 2516	n:190000
Cons ci ratio: 1.373554e-01	ci left: 3.975151e-03	ci right 4.566447e-03	k: 810	n:190000
KS ci ratio: 1.082348e-02	ci left: 4.061991e-01	ci right 4.106247e-01	k: 77598	n:190000
GOT1L1   190000 perm   51 sec   (3727 perm/sec)   p_kst 4.084105e-01   p_cons 4.263158e-03   p_joint 1.324211e-02

Joint ci ratio: 7.649532e-02	ci left: 1.246398e-02	ci right 1.346021e-02	k: 2591	n:200000
Cons ci ratio: 1.338526e-01	ci left: 3.984101e-03	ci right 4.560413e-03	k: 853	n:200000
KS ci ratio: 1.054933e-02	ci left: 4.062596e-01	ci right 4.105730e-01	k: 81683	n:200000
GOT1L1   200000 perm   55 sec   (3663 perm/sec)   p_kst 4.084150e-01   p_cons 4.265000e-03   p_joint 1.295500e-02

Joint ci ratio: 7.515134e-02	ci left: 1.230955e-02	ci right 1.327539e-02	k: 2685	n:210000
Cons ci ratio: 1.308247e-01	ci left: 3.978551e-03	ci right 4.540030e-03	k: 893	n:210000
KS ci ratio: 1.029267e-02	ci left: 4.064251e-01	ci right 4.106346e-01	k: 85791	n:210000
GOT1L1   210000 perm   58 sec   (3594 perm/sec)   p_kst 4.085286e-01   p_cons 4.252381e-03   p_joint 1.278571e-02

Joint ci ratio: 8.044751e-02	ci left: 1.024753e-02	ci right 1.111089e-02	k: 2348	n:220000
Cons ci ratio: 1.288272e-01	ci left: 3.920839e-03	ci right 4.465079e-03	k: 921	n:220000
KS ci ratio: 1.005928e-02	ci left: 4.063177e-01	ci right 4.104301e-01	k: 89842	n:220000
GOT1L1   220000 perm   62 sec   (3529 perm/sec)   p_kst 4.083727e-01   p_cons 4.186364e-03   p_joint 1.067273e-02

Joint ci ratio: 7.252224e-02	ci left: 1.208835e-02	ci right 1.300225e-02	k: 2884	n:230000
Cons ci ratio: 1.259240e-01	ci left: 3.931369e-03	ci right 4.463854e-03	k: 964	n:230000
KS ci ratio: 9.839740e-03	ci left: 4.062859e-01	ci right 4.103077e-01	k: 93908	n:230000
GOT1L1   230000 perm   66 sec   (3474 perm/sec)   p_kst 4.082957e-01   p_cons 4.191304e-03   p_joint 1.253913e-02

Joint ci ratio: 6.059715e-02	ci left: 1.661792e-02	ci right 1.766046e-02	k: 4112	n:240000
Cons ci ratio: 1.227812e-01	ci left: 3.969420e-03	ci right 4.492665e-03	k: 1014	n:240000
KS ci ratio: 9.630487e-03	ci left: 4.064325e-01	ci right 4.103697e-01	k: 98016	n:240000
GOT1L1   240000 perm   70 sec   (3427 perm/sec)   p_kst 4.084000e-01   p_cons 4.225000e-03   p_joint 1.713333e-02

Joint ci ratio: 6.002745e-02	ci left: 1.626828e-02	ci right 1.727896e-02	k: 4192	n:250000
Cons ci ratio: 1.202030e-01	ci left: 3.981296e-03	ci right 4.494303e-03	k: 1058	n:250000
KS ci ratio: 9.436852e-03	ci left: 4.064243e-01	ci right 4.102818e-01	k: 102088	n:250000
GOT1L1   250000 perm   74 sec   (3381 perm/sec)   p_kst 4.083520e-01   p_cons 4.232000e-03   p_joint 1.676800e-02

Joint ci ratio: 5.991656e-02	ci left: 1.571064e-02	ci right 1.668480e-02	k: 4210	n:260000
Cons ci ratio: 1.176202e-01	ci left: 4.003564e-03	ci right 4.507585e-03	k: 1105	n:260000
KS ci ratio: 9.258057e-03	ci left: 4.062292e-01	ci right 4.100113e-01	k: 106111	n:260000
GOT1L1   260000 perm   78 sec   (3330 perm/sec)   p_kst 4.081192e-01   p_cons 4.250000e-03   p_joint 1.619231e-02

Joint ci ratio: 5.899542e-02	ci left: 1.561401e-02	ci right 1.656679e-02	k: 4343	n:270000
Cons ci ratio: 1.155498e-01	ci left: 3.999111e-03	ci right 4.493105e-03	k: 1145	n:270000
KS ci ratio: 9.088284e-03	ci left: 4.060899e-01	ci right 4.098010e-01	k: 110145	n:270000
GOT1L1   270000 perm   82 sec   (3285 perm/sec)   p_kst 4.079444e-01   p_cons 4.240741e-03   p_joint 1.608519e-02

Joint ci ratio: 5.866383e-02	ci left: 1.523574e-02	ci right 1.616004e-02	k: 4394	n:280000
Cons ci ratio: 1.136814e-01	ci left: 3.988108e-03	ci right 4.472242e-03	k: 1183	n:280000
KS ci ratio: 8.930028e-03	ci left: 4.058255e-01	ci right 4.094693e-01	k: 114141	n:280000
GOT1L1   280000 perm   86 sec   (3239 perm/sec)   p_kst 4.076464e-01   p_cons 4.225000e-03   p_joint 1.569286e-02

Joint ci ratio: 6.009077e-02	ci left: 1.402729e-02	ci right 1.489969e-02	k: 4193	n:290000
Cons ci ratio: 1.114891e-01	ci left: 4.008094e-03	ci right 4.484655e-03	k: 1230	n:290000
KS ci ratio: 8.773677e-03	ci left: 4.059141e-01	ci right 4.094946e-01	k: 118234	n:290000
GOT1L1   290000 perm   91 sec   (3195 perm/sec)   p_kst 4.077034e-01   p_cons 4.241379e-03   p_joint 1.445862e-02

Joint ci ratio: 5.409948e-02	ci left: 1.673446e-02	ci right 1.766823e-02	k: 5159	n:300000
Cons ci ratio: 1.096779e-01	ci left: 4.007378e-03	ci right 4.475612e-03	k: 1271	n:300000
KS ci ratio: 8.628239e-03	ci left: 4.058309e-01	ci right 4.093509e-01	k: 122277	n:300000
GOT1L1   300000 perm   95 sec   (3151 perm/sec)   p_kst 4.075900e-01   p_cons 4.236667e-03   p_joint 1.719667e-02

Joint ci ratio: 5.407214e-02	ci left: 1.621998e-02	ci right 1.712457e-02	k: 5167	n:310000
Cons ci ratio: 1.077053e-01	ci left: 4.025601e-03	ci right 4.486968e-03	k: 1318	n:310000
KS ci ratio: 8.488496e-03	ci left: 4.058276e-01	ci right 4.092903e-01	k: 126343	n:310000
GOT1L1   310000 perm   100 sec   (3109 perm/sec)   p_kst 4.075581e-01   p_cons 4.251613e-03   p_joint 1.666774e-02

Joint ci ratio: 5.571983e-02	ci left: 1.480667e-02	ci right 1.565840e-02	k: 4873	n:320000
Cons ci ratio: 1.062660e-01	ci left: 4.009288e-03	ci right 4.462262e-03	k: 1354	n:320000
KS ci ratio: 8.355762e-03	ci left: 4.057999e-01	ci right 4.092080e-01	k: 130401	n:320000
GOT1L1   320000 perm   104 sec   (3067 perm/sec)   p_kst 4.075031e-01   p_cons 4.231250e-03   p_joint 1.522813e-02

Joint ci ratio: 4.662281e-02	ci left: 2.048353e-02	ci right 2.146430e-02	k: 6920	n:330000
Cons ci ratio: 1.042079e-01	ci left: 4.047128e-03	ci right 4.494979e-03	k: 1408	n:330000
KS ci ratio: 8.229790e-03	ci left: 4.057320e-01	ci right 4.090878e-01	k: 134445	n:330000
GOT1L1   330000 perm   109 sec   (3028 perm/sec)   p_kst 4.074091e-01   p_cons 4.266667e-03   p_joint 2.096970e-02

Joint ci ratio: 4.455005e-02	ci left: 2.176846e-02	ci right 2.276323e-02	k: 7569	n:340000
Cons ci ratio: 1.029027e-01	ci left: 4.031233e-03	ci right 4.471400e-03	k: 1444	n:340000
KS ci ratio: 8.106039e-03	ci left: 4.058653e-01	ci right 4.091716e-01	k: 138556	n:340000
GOT1L1   340000 perm   114 sec   (2992 perm/sec)   p_kst 4.075176e-01   p_cons 4.247059e-03   p_joint 2.226176e-02

Joint ci ratio: 4.210048e-02	ci left: 2.366231e-02	ci right 2.468273e-02	k: 8459	n:350000
Cons ci ratio: 1.012342e-01	ci left: 4.049699e-03	ci right 4.484286e-03	k: 1492	n:350000
KS ci ratio: 7.991111e-03	ci left: 4.057858e-01	ci right 4.090443e-01	k: 142595	n:350000
GOT1L1   350000 perm   118 sec   (2955 perm/sec)   p_kst 4.074143e-01   p_cons 4.262857e-03   p_joint 2.416857e-02

Joint ci ratio: 4.270805e-02	ci left: 2.237809e-02	ci right 2.335739e-02	k: 8231	n:360000
Cons ci ratio: 1.000034e-01	ci left: 4.037397e-03	ci right 4.465087e-03	k: 1529	n:360000
KS ci ratio: 7.876268e-03	ci left: 4.059970e-01	ci right 4.092101e-01	k: 146737	n:360000
GOT1L1   360000 perm   123 sec   (2919 perm/sec)   p_kst 4.076028e-01   p_cons 4.247222e-03   p_joint 2.286389e-02

Joint ci ratio: 4.087296e-02	ci left: 2.376074e-02	ci right 2.475483e-02	k: 8974	n:370000
Cons ci ratio: 9.859557e-02	ci left: 4.044245e-03	ci right 4.466280e-03	k: 1573	n:370000
KS ci ratio: 7.775196e-03	ci left: 4.056406e-01	ci right 4.088095e-01	k: 150673	n:370000
GOT1L1   370000 perm   128 sec   (2886 perm/sec)   p_kst 4.072243e-01   p_cons 4.251351e-03   p_joint 2.425405e-02

Outputting figure to mutsig2_images.part000000000072/GOT1L1.3_1147_370000_0.40722_0.0042514_0.024254.png
                gene_name: GOT1L1
               theta_stop: 0.099 
                    nperm: 370000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.0043 
      ci_cons_bounds_left: 0.0040 
     ci_cons_bounds_right: 0.0045 
                  p_joint: 0.024 
     ci_joint_bounds_left: 0.024 
    ci_joint_bounds_right: 0.025 

Current progress: 50 percent done.
GOT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.591874e-02	ci left: 3.201890e-01	ci right 3.387104e-01	k: 3294	n:10000
Cons ci ratio: 3.189665e-02	ci left: 5.919262e-01	ci right 6.112146e-01	k: 6016	n:10000
KS ci ratio: 7.503512e-02	ci left: 2.062917e-01	ci right 2.224751e-01	k: 2143	n:10000
GOT2   10000 perm   2 sec   (5918 perm/sec)   p_kst 2.143000e-01   p_cons 6.016000e-01   p_joint 3.294000e-01

Outputting figure to mutsig2_images.part000000000072/GOT2.3_1333_10000_0.2143_0.6016_0.3294.png
                gene_name: GOT2
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 53 percent done.
GPAA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.645999e-02	ci left: 5.262664e-01	ci right 5.459125e-01	k: 5361	n:10000
Cons ci ratio: 2.566713e-02	ci left: 6.908102e-01	ci right 7.088733e-01	k: 6999	n:10000
KS ci ratio: 8.386407e-02	ci left: 1.717274e-01	ci right 1.868599e-01	k: 1792	n:10000
GPAA1   10000 perm   2 sec   (5957 perm/sec)   p_kst 1.792000e-01   p_cons 6.999000e-01   p_joint 5.361000e-01

Outputting figure to mutsig2_images.part000000000072/GPAA1.3_1914_10000_0.1792_0.6999_0.5361.png
                gene_name: GPAA1
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 55 percent done.
GPAM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.905540e-02	ci left: 2.352124e-01	ci right 2.521372e-01	k: 2436	n:10000
Cons ci ratio: 6.096528e-02	ci left: 2.834963e-01	ci right 3.014247e-01	k: 2924	n:10000
KS ci ratio: 1.687404e-01	ci left: 4.686539e-02	ci right 5.559839e-02	k: 511	n:10000
GPAM   10000 perm   2 sec   (5201 perm/sec)   p_kst 5.110000e-02   p_cons 2.924000e-01   p_joint 2.436000e-01

Joint ci ratio: 7.216866e-02	ci left: 1.238914e-01	ci right 1.332169e-01	k: 2570	n:20000
Cons ci ratio: 4.333941e-02	ci left: 2.839655e-01	ci right 2.965955e-01	k: 5805	n:20000
KS ci ratio: 1.172820e-01	ci left: 4.978945e-02	ci right 5.604134e-02	k: 1057	n:20000
GPAM   20000 perm   4 sec   (4512 perm/sec)   p_kst 5.285000e-02   p_cons 2.902500e-01   p_joint 1.285000e-01

Joint ci ratio: 8.652594e-02	ci left: 6.125606e-02	ci right 6.682873e-02	k: 1920	n:30000
Cons ci ratio: 3.654265e-02	ci left: 2.721399e-01	ci right 2.823032e-01	k: 8316	n:30000
KS ci ratio: 9.451003e-02	ci left: 5.166456e-02	ci right 5.682220e-02	k: 1626	n:30000
GPAM   30000 perm   7 sec   (4226 perm/sec)   p_kst 5.420000e-02   p_cons 2.772000e-01   p_joint 6.400000e-02

Outputting figure to mutsig2_images.part000000000072/GPAM.3_2567_30000_0.0542_0.2772_0.064.png
                gene_name: GPAM
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.054 
        ci_ks_bounds_left: 0.052 
       ci_ks_bounds_right: 0.057 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.064 
     ci_joint_bounds_left: 0.061 
    ci_joint_bounds_right: 0.067 

Current progress: 58 percent done.
GNAT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.929614e-02	ci left: 4.888518e-01	ci right 5.085490e-01	k: 4987	n:10000
Cons ci ratio: 1.550859e-02	ci left: 8.578398e-01	ci right 8.713470e-01	k: 8647	n:10000
KS ci ratio: 5.763252e-02	ci left: 3.070909e-01	ci right 3.254162e-01	k: 3162	n:10000
GNAT1   10000 perm   2 sec   (6409 perm/sec)   p_kst 3.162000e-01   p_cons 8.647000e-01   p_joint 4.987000e-01

Outputting figure to mutsig2_images.part000000000072/GNAT1.2_1085_10000_0.3162_0.8647_0.4987.png
                gene_name: GNAT1
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 61 percent done.
GNB1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.468541e-02	ci left: 4.250540e-01	ci right 4.445840e-01	k: 4348	n:10000
Cons ci ratio: 1.220386e-02	ci left: 9.059684e-01	ci right 9.171905e-01	k: 9117	n:10000
KS ci ratio: 1.512986e-01	ci left: 5.812294e-02	ci right 6.773362e-02	k: 628	n:10000
GNB1L   10000 perm   1 sec   (6734 perm/sec)   p_kst 6.280000e-02   p_cons 9.117000e-01   p_joint 4.348000e-01

Joint ci ratio: 2.392663e-02	ci left: 5.661095e-01	ci right 5.798692e-01	k: 11460	n:20000
Cons ci ratio: 8.474341e-03	ci left: 9.105902e-01	ci right 9.183888e-01	k: 18291	n:20000
KS ci ratio: 1.068959e-01	ci left: 5.962273e-02	ci right 6.640500e-02	k: 1259	n:20000
GNB1L   20000 perm   3 sec   (5761 perm/sec)   p_kst 6.295000e-02   p_cons 9.145500e-01   p_joint 5.730000e-01

Joint ci ratio: 3.903324e-02	ci left: 2.466641e-01	ci right 2.565173e-01	k: 7547	n:30000
Cons ci ratio: 6.471709e-03	ci left: 9.213846e-01	ci right 9.273996e-01	k: 27733	n:30000
KS ci ratio: 8.815518e-02	ci left: 5.910110e-02	ci right 6.458413e-02	k: 1854	n:30000
GNB1L   30000 perm   6 sec   (5388 perm/sec)   p_kst 6.180000e-02   p_cons 9.244333e-01   p_joint 2.515667e-01

Outputting figure to mutsig2_images.part000000000072/GNB1L.2_1008_30000_0.0618_0.92443_0.25157.png
                gene_name: GNB1L
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.062 
        ci_ks_bounds_left: 0.059 
       ci_ks_bounds_right: 0.065 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 63 percent done.
GNB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.126700e-02	ci left: 7.642560e-01	ci right 7.807849e-01	k: 7726	n:10000
Cons ci ratio: 4.189691e-02	ci left: 4.568828e-01	ci right 4.765366e-01	k: 4667	n:10000
KS ci ratio: 3.480620e-02	ci left: 5.493028e-01	ci right 5.688627e-01	k: 5591	n:10000
GNB2   10000 perm   2 sec   (6520 perm/sec)   p_kst 5.591000e-01   p_cons 4.667000e-01   p_joint 7.726000e-01

Outputting figure to mutsig2_images.part000000000072/GNB2.2_1059_10000_0.5591_0.4667_0.7726.png
                gene_name: GNB2
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 66 percent done.
GNB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.061926e-03	ci left: 9.554502e-01	ci right 9.632793e-01	k: 9595	n:10000
Cons ci ratio: 4.360219e-02	ci left: 4.371223e-01	ci right 4.567087e-01	k: 4469	n:10000
KS ci ratio: 3.472863e-02	ci left: 5.504051e-01	ci right 5.699598e-01	k: 5602	n:10000
GNB3   10000 perm   2 sec   (5698 perm/sec)   p_kst 5.602000e-01   p_cons 4.469000e-01   p_joint 9.595000e-01

Outputting figure to mutsig2_images.part000000000072/GNB3.2_1059_10000_0.5602_0.4469_0.9595.png
                gene_name: GNB3
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.96 

Current progress: 68 percent done.
GNE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.984913e-02	ci left: 1.526681e-01	ci right 1.671306e-01	k: 1598	n:10000
KS ci ratio: 7.468054e-02	ci left: 2.078695e-01	ci right 2.240963e-01	k: 2159	n:10000
GNE   10000 perm   2 sec   (5335 perm/sec)   p_kst 2.159000e-01   p_cons 1.598000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000072/GNE.2_2310_10000_0.2159_0.1598_1.png
                gene_name: GNE
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
GNG4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.309227e-02	ci left: 8.936454e-01	ci right 9.055207e-01	k: 8997	n:10000
Cons ci ratio: 3.918628e-02	ci left: 4.902514e-01	ci right 5.099486e-01	k: 5001	n:10000
KS ci ratio: 1.266640e-01	ci left: 8.183830e-02	ci right 9.300341e-02	k: 873	n:10000
GNG4   10000 perm   1 sec   (7630 perm/sec)   p_kst 8.730000e-02   p_cons 5.001000e-01   p_joint 8.997000e-01

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 2.779977e-02	ci left: 4.915462e-01	ci right 5.054543e-01	k: 9970	n:20000
KS ci ratio: 8.821853e-02	ci left: 8.587260e-02	ci right 9.384710e-02	k: 1796	n:20000
GNG4   20000 perm   3 sec   (6446 perm/sec)   p_kst 8.980000e-02   p_cons 4.985000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000072/GNG4.2_236_20000_0.0898_0.4985_1.png
                gene_name: GNG4
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.090 
        ci_ks_bounds_left: 0.086 
       ci_ks_bounds_right: 0.094 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 74 percent done.
GNL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.153763e-03	ci left: 9.803783e-01	ci right 9.855349e-01	k: 9831	n:10000
Cons ci ratio: 3.907674e-02	ci left: 4.916510e-01	ci right 5.113481e-01	k: 5015	n:10000
KS ci ratio: 1.068561e-02	ci left: 9.257524e-01	ci right 9.357949e-01	k: 9309	n:10000
GNL1   10000 perm   2 sec   (6141 perm/sec)   p_kst 9.309000e-01   p_cons 5.015000e-01   p_joint 9.831000e-01

Outputting figure to mutsig2_images.part000000000072/GNL1.2_1872_10000_0.9309_0.5015_0.9831.png
                gene_name: GNL1
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 76 percent done.
GNPAT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.700192e-02	ci left: 2.463807e-01	ci right 2.635622e-01	k: 2549	n:10000
Cons ci ratio: 2.687064e-02	ci left: 6.710580e-01	ci right 6.894369e-01	k: 6803	n:10000
KS ci ratio: 1.348616e-01	ci left: 7.262363e-02	ci right 8.322381e-02	k: 778	n:10000
GNPAT   10000 perm   2 sec   (5544 perm/sec)   p_kst 7.780000e-02   p_cons 6.803000e-01   p_joint 2.549000e-01

Joint ci ratio: 6.766256e-02	ci left: 1.388162e-01	ci right 1.485876e-01	k: 2873	n:20000
Cons ci ratio: 1.879607e-02	ci left: 6.785107e-01	ci right 6.914355e-01	k: 13700	n:20000
KS ci ratio: 9.493467e-02	ci left: 7.480898e-02	ci right 8.231408e-02	k: 1570	n:20000
GNPAT   20000 perm   4 sec   (4892 perm/sec)   p_kst 7.850000e-02   p_cons 6.850000e-01   p_joint 1.436500e-01

Outputting figure to mutsig2_images.part000000000072/GNPAT.2_2107_20000_0.0785_0.685_0.14365.png
                gene_name: GNPAT
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.079 
        ci_ks_bounds_left: 0.075 
       ci_ks_bounds_right: 0.082 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 79 percent done.
GOLGA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.470749e-02	ci left: 5.507057e-01	ci right 5.702590e-01	k: 5605	n:10000
KS ci ratio: 1.599533e-02	ci left: 8.502907e-01	ci right 8.641005e-01	k: 8573	n:10000
GOLGA5   10000 perm   2 sec   (5971 perm/sec)   p_kst 8.573000e-01   p_cons 5.605000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000072/GOLGA5.2_2244_10000_0.8573_0.5605_1.png
                gene_name: GOLGA5
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
GOLPH3L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.177040e-02	ci left: 5.938334e-01	ci right 6.131063e-01	k: 6035	n:10000
Cons ci ratio: 9.191022e-02	ci left: 1.467809e-01	ci right 1.610214e-01	k: 1538	n:10000
KS ci ratio: 1.702089e-02	ci left: 8.340910e-01	ci right 8.485096e-01	k: 8414	n:10000
GOLPH3L   10000 perm   1 sec   (6790 perm/sec)   p_kst 8.414000e-01   p_cons 1.538000e-01   p_joint 6.035000e-01

Outputting figure to mutsig2_images.part000000000072/GOLPH3L.2_874_10000_0.8414_0.1538_0.6035.png
                gene_name: GOLPH3L
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 84 percent done.
GP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.010601e-02	ci left: 4.786573e-01	ci right 4.983494e-01	k: 4885	n:10000
Cons ci ratio: 3.457387e-02	ci left: 5.526098e-01	ci right 5.721538e-01	k: 5624	n:10000
KS ci ratio: 7.304386e-02	ci left: 2.153664e-01	ci right 2.317949e-01	k: 2235	n:10000
GP6   10000 perm   2 sec   (5363 perm/sec)   p_kst 2.235000e-01   p_cons 5.624000e-01   p_joint 4.885000e-01

Outputting figure to mutsig2_images.part000000000072/GP6.2_1895_10000_0.2235_0.5624_0.4885.png
                gene_name: GP6
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 87 percent done.
GP9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.861100e-02	ci left: 6.429732e-01	ci right 6.617380e-01	k: 6524	n:10000
KS ci ratio: 1.888769e-02	ci left: 8.037956e-01	ci right 8.192225e-01	k: 8116	n:10000
GP9   10000 perm   1 sec   (7150 perm/sec)   p_kst 8.116000e-01   p_cons 6.524000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000072/GP9.2_538_10000_0.8116_0.6524_1.png
                gene_name: GP9
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
GPAT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.573716e-02	ci left: 4.136894e-01	ci right 4.331553e-01	k: 4234	n:10000
Cons ci ratio: 4.409943e-02	ci left: 4.315362e-01	ci right 4.510980e-01	k: 4413	n:10000
KS ci ratio: 8.655262e-02	ci left: 1.627829e-01	ci right 1.776098e-01	k: 1701	n:10000
GPAT2   10000 perm   2 sec   (5248 perm/sec)   p_kst 1.701000e-01   p_cons 4.413000e-01   p_joint 4.234000e-01

Outputting figure to mutsig2_images.part000000000072/GPAT2.2_2472_10000_0.1701_0.4413_0.4234.png
                gene_name: GPAT2
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 92 percent done.
GPBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.071847e-02	ci left: 6.099005e-01	ci right 6.290299e-01	k: 6195	n:10000
Cons ci ratio: 7.307472e-03	ci left: 9.627847e-01	ci right 9.699403e-01	k: 9665	n:10000
KS ci ratio: 7.012086e-02	ci left: 2.296806e-01	ci right 2.464723e-01	k: 2380	n:10000
GPBP1   10000 perm   2 sec   (6391 perm/sec)   p_kst 2.380000e-01   p_cons 9.665000e-01   p_joint 6.195000e-01

Outputting figure to mutsig2_images.part000000000072/GPBP1.2_1487_10000_0.238_0.9665_0.6195.png
                gene_name: GPBP1
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 95 percent done.
GPBP1L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.289701e-03	ci left: 9.423233e-01	ci right 9.512142e-01	k: 9469	n:10000
KS ci ratio: 3.524595e-02	ci left: 5.430910e-01	ci right 5.626782e-01	k: 5529	n:10000
GPBP1L1   10000 perm   2 sec   (6402 perm/sec)   p_kst 5.529000e-01   p_cons 9.469000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000072/GPBP1L1.2_1465_10000_0.5529_0.9469_1.png
                gene_name: GPBP1L1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
GPC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.285498e-02	ci left: 7.376507e-01	ci right 7.548057e-01	k: 7463	n:10000
Cons ci ratio: 2.336195e-02	ci left: 7.291621e-01	ci right 7.464992e-01	k: 7379	n:10000
KS ci ratio: 4.495916e-02	ci left: 4.220628e-01	ci right 4.415769e-01	k: 4318	n:10000
GPC1   10000 perm   2 sec   (5701 perm/sec)   p_kst 4.318000e-01   p_cons 7.379000e-01   p_joint 7.463000e-01

Outputting figure to mutsig2_images.part000000000072/GPC1.2_1713_10000_0.4318_0.7379_0.7463.png
                gene_name: GPC1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.75 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000072
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 72 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1713>
Subject: Job 8004116: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1713>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000073> was used as the working directory.
Started at Sun Nov 11 15:06:22 2012
Results reported at Sun Nov 11 15:15:10 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000073.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000073.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 73  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000073.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    559.70 sec.
    Max Memory :      4693 MB
    Max Swap   :      7124 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
73
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 73
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 73: processing genes 6515 - 6604
Calculating significance of each gene.
Using projection method.
6515	GPC2	4.203700e-01
6516	GPC3	1.627625e-02
6517	GPC4	9.116222e-01
6518	GPC5	8.184096e-05
6519	GPC6	6.090199e-01
6520	GPCPD1	1
6521	GPD1	7.842410e-01
6522	GPD1L	7.962183e-01
6523	GPD2	7.106692e-01
6524	GPER	3.855314e-01
6525	GPHA2	1
6526	GPHB5	1.204020e-02
6527	GPHN	6.728259e-01
6528	GPI	1.616200e-01
6529	GPIHBP1	1
6530	GPKOW	6.975808e-01
6531	GPLD1	9.224366e-01
6532	GPM6A	2.565406e-02
6533	GPM6B	1
6534	GPN1	6.704105e-01
6535	GPN2	1
6536	GPN3	5.484879e-01
6537	GPNMB	1.154954e-01
6538	GPR1	2.403227e-01
6539	GPR101	7.507517e-01
6540	GPR107	8.434657e-01
6541	GPR108	1
6542	GPR109A	1
6543	GPR109B	3.809658e-01
6544	GPR110	9.530374e-01
6545	GPR111	5.694770e-02
6546	GPR112	9.967828e-01
6547	GPR113	1
6548	GPR114	7.115731e-01
6549	GPR115	2.484347e-01
6550	GPR116	1
6551	GPR119	1
6552	GPR12	1
6553	GPR120	6.291082e-01
6554	GPR123	3.163819e-01
6555	GPR124	9.522533e-01
6556	GPR125	1
6557	GPR126	4.062147e-01
6558	GPR128	8.962380e-01
6559	GPR132	6.121050e-01
6560	GPR133	1
6561	GPR135	2.215141e-01
6562	GPR137	8.595462e-01
6563	GPR137B	8.459357e-02
6564	GPR137C	1.376407e-01
6565	GPR139	4.544146e-01
6566	GPR141	2.454205e-02
6567	GPR142	7.978688e-01
6568	GPR143	1.272201e-01
6569	GPR146	1
6570	GPR148	1
6571	GPR149	7.062771e-01
6572	GPR15	1
6573	GPR150	1
6574	GPR151	1
6575	GPR152	1
6576	GPR153	2.601273e-01
6577	GPR155	1
6578	GPR156	5.317362e-01
6579	GPR157	2.132178e-01
6580	GPR158	4.273609e-01
6581	GPR160	4.460050e-01
6582	GPR161	1
6583	GPR162	9.056510e-01
6584	GPR17	8.330461e-02
6585	GPR171	2.841324e-01
6586	GPR172A	8.683798e-01
6587	GPR172B	7.555864e-01
6588	GPR173	1
6589	GPR174	4.370697e-03
6590	GPR176	1
6591	GPR179	9.991113e-01
6592	GPR18	3.920567e-01
6593	GPR180	3.755442e-01
6594	GPR182	1
6595	GPR183	7.214214e-01
6596	GPR19	1
6597	GPR20	3.289891e-01
6598	GPR21	1
6599	GPR22	1
6600	GPR25	6.757804e-01
6601	GPR26	1.709188e-01
6602	GPR27	4.651486e-01
6603	GPR3	1
6604	GPR31	1
Done

Running MutSig 2:
Scatter job 73: processing genes 6515 - 6604
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
GPR112
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.353006e-02	ci left: 8.873914e-01	ci right 8.995783e-01	k: 8936	n:10000
KS ci ratio: 2.264382e-02	ci left: 7.411889e-01	ci right 7.582654e-01	k: 7498	n:10000
GPR112   10000 perm   3 sec   (2986 perm/sec)   p_kst 7.498000e-01   p_cons 8.936000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000073/GPR112.16_9335_10000_0.7498_0.8936_1.png
                gene_name: GPR112
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 2 percent done.
GPR158
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.432065e-01	ci left: 6.468834e-02	ci right 7.476406e-02	k: 696	n:10000
Cons ci ratio: 1.717671e-01	ci left: 4.523448e-02	ci right 5.383036e-02	k: 494	n:10000
KS ci ratio: 1.332907e-01	ci left: 7.427098e-02	ci right 8.497542e-02	k: 795	n:10000
GPR158   10000 perm   2 sec   (4221 perm/sec)   p_kst 7.950000e-02   p_cons 4.940000e-02   p_joint 6.960000e-02

Joint ci ratio: 1.347404e-01	ci left: 3.785835e-02	ci right 4.337623e-02	k: 811	n:20000
Cons ci ratio: 1.241215e-01	ci left: 4.454455e-02	ci right 5.048789e-02	k: 949	n:20000
KS ci ratio: 9.977223e-02	ci left: 6.806427e-02	ci right 7.526086e-02	k: 1432	n:20000
GPR158   20000 perm   5 sec   (3878 perm/sec)   p_kst 7.160000e-02   p_cons 4.745000e-02   p_joint 4.055000e-02

Joint ci ratio: 1.112110e-01	ci left: 3.755099e-02	ci right 4.200537e-02	k: 1192	n:30000
Cons ci ratio: 1.021763e-01	ci left: 4.437225e-02	ci right 4.918268e-02	k: 1402	n:30000
KS ci ratio: 7.974886e-02	ci left: 7.155329e-02	ci right 7.752942e-02	k: 2235	n:30000
GPR158   30000 perm   8 sec   (3753 perm/sec)   p_kst 7.450000e-02   p_cons 4.673333e-02   p_joint 3.973333e-02

Joint ci ratio: 9.476118e-02	ci left: 3.907768e-02	ci right 4.298931e-02	k: 1640	n:40000
Cons ci ratio: 8.900463e-02	ci left: 4.418782e-02	ci right 4.832838e-02	k: 1849	n:40000
KS ci ratio: 6.901893e-02	ci left: 7.204360e-02	ci right 7.721836e-02	k: 2984	n:40000
GPR158   40000 perm   11 sec   (3658 perm/sec)   p_kst 7.460000e-02   p_cons 4.622500e-02   p_joint 4.100000e-02

Outputting figure to mutsig2_images.part000000000073/GPR158.15_3692_40000_0.0746_0.046225_0.041.png
                gene_name: GPR158
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.075 
        ci_ks_bounds_left: 0.072 
       ci_ks_bounds_right: 0.077 
                   p_cons: 0.046 
      ci_cons_bounds_left: 0.044 
     ci_cons_bounds_right: 0.048 
                  p_joint: 0.041 
     ci_joint_bounds_left: 0.039 
    ci_joint_bounds_right: 0.043 

Current progress: 4 percent done.
GPC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.772592e-02	ci left: 3.063966e-01	ci right 3.247110e-01	k: 3155	n:10000
Cons ci ratio: 5.305878e-03	ci left: 9.793064e-01	ci right 9.846075e-01	k: 9821	n:10000
KS ci ratio: 1.170758e-01	ci left: 9.486876e-02	ci right 1.067649e-01	k: 1007	n:10000
GPC5   10000 perm   2 sec   (4951 perm/sec)   p_kst 1.007000e-01   p_cons 9.821000e-01   p_joint 3.155000e-01

Joint ci ratio: 4.523288e-02	ci left: 2.667845e-01	ci right 2.791816e-01	k: 5459	n:20000
Cons ci ratio: 3.752294e-03	ci left: 9.801133e-01	ci right 9.838447e-01	k: 19641	n:20000
KS ci ratio: 8.345583e-02	ci left: 9.518871e-02	ci right 1.035282e-01	k: 1986	n:20000
GPC5   20000 perm   6 sec   (3262 perm/sec)   p_kst 9.930000e-02   p_cons 9.820500e-01   p_joint 2.729500e-01

Outputting figure to mutsig2_images.part000000000073/GPC5.12_1751_20000_0.0993_0.98205_0.27295.png
                gene_name: GPC5
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.099 
        ci_ks_bounds_left: 0.095 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 6 percent done.
GPR115
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.776168e-02	ci left: 3.927683e-01	ci right 4.120886e-01	k: 4024	n:10000
Cons ci ratio: 4.491338e-02	ci left: 4.225613e-01	ci right 4.420781e-01	k: 4323	n:10000
KS ci ratio: 6.778681e-02	ci left: 2.420311e-01	ci right 2.591144e-01	k: 2505	n:10000
GPR115   10000 perm   3 sec   (3141 perm/sec)   p_kst 2.505000e-01   p_cons 4.323000e-01   p_joint 4.024000e-01

Outputting figure to mutsig2_images.part000000000073/GPR115.7_2120_10000_0.2505_0.4323_0.4024.png
                gene_name: GPR115
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 8 percent done.
GPR128
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.490173e-02	ci left: 2.068833e-01	ci right 2.230831e-01	k: 2149	n:10000
Cons ci ratio: 8.689119e-02	ci left: 1.617022e-01	ci right 1.764911e-01	k: 1690	n:10000
KS ci ratio: 7.795978e-02	ci left: 1.938730e-01	ci right 2.097011e-01	k: 2017	n:10000
GPR128   10000 perm   2 sec   (4976 perm/sec)   p_kst 2.017000e-01   p_cons 1.690000e-01   p_joint 2.149000e-01

Outputting figure to mutsig2_images.part000000000073/GPR128.7_2458_10000_0.2017_0.169_0.2149.png
                gene_name: GPR128
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 10 percent done.
GPC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.221246e-01	ci left: 8.766844e-02	ci right 9.916968e-02	k: 933	n:10000
Cons ci ratio: 2.305278e-01	ci left: 2.485465e-02	ci right 3.142409e-02	k: 280	n:10000
KS ci ratio: 6.245627e-02	ci left: 2.736903e-01	ci right 2.914365e-01	k: 2825	n:10000
GPC3   10000 perm   2 sec   (5289 perm/sec)   p_kst 2.825000e-01   p_cons 2.800000e-02   p_joint 9.330000e-02

Joint ci ratio: 9.797943e-02	ci left: 7.045809e-02	ci right 7.776631e-02	k: 1481	n:20000
Cons ci ratio: 1.646773e-01	ci left: 2.527745e-02	ci right 2.986128e-02	k: 550	n:20000
KS ci ratio: 4.459766e-02	ci left: 2.723944e-01	ci right 2.848700e-01	k: 5572	n:20000
GPC3   20000 perm   5 sec   (3966 perm/sec)   p_kst 2.786000e-01   p_cons 2.750000e-02   p_joint 7.405000e-02

Joint ci ratio: 1.001703e-01	ci left: 4.612881e-02	ci right 5.102575e-02	k: 1456	n:30000
Cons ci ratio: 1.392546e-01	ci left: 2.393877e-02	ci right 2.755387e-02	k: 771	n:30000
KS ci ratio: 3.645774e-02	ci left: 2.730679e-01	ci right 2.832417e-01	k: 8344	n:30000
GPC3   30000 perm   9 sec   (3476 perm/sec)   p_kst 2.781333e-01   p_cons 2.570000e-02   p_joint 4.853333e-02

Joint ci ratio: 7.107263e-02	ci left: 6.815763e-02	ci right 7.320491e-02	k: 2826	n:40000
Cons ci ratio: 1.140215e-01	ci left: 2.706128e-02	ci right 3.035761e-02	k: 1147	n:40000
KS ci ratio: 3.149818e-02	ci left: 2.747079e-01	ci right 2.835242e-01	k: 11164	n:40000
GPC3   40000 perm   12 sec   (3224 perm/sec)   p_kst 2.791000e-01   p_cons 2.867500e-02   p_joint 7.065000e-02

Joint ci ratio: 6.245217e-02	ci left: 7.075439e-02	ci right 7.533533e-02	k: 3651	n:50000
Cons ci ratio: 1.019476e-01	ci left: 2.725395e-02	ci right 3.020110e-02	k: 1435	n:50000
KS ci ratio: 2.816899e-02	ci left: 2.752309e-01	ci right 2.831147e-01	k: 13958	n:50000
GPC3   50000 perm   17 sec   (2977 perm/sec)   p_kst 2.791600e-01   p_cons 2.870000e-02   p_joint 7.302000e-02

Joint ci ratio: 5.074258e-02	ci left: 8.816647e-02	ci right 9.277323e-02	k: 5427	n:60000
Cons ci ratio: 9.346236e-02	ci left: 2.715051e-02	ci right 2.982869e-02	k: 1708	n:60000
KS ci ratio: 2.568786e-02	ci left: 2.759947e-01	ci right 2.831933e-01	k: 16775	n:60000
GPC3   60000 perm   21 sec   (2858 perm/sec)   p_kst 2.795833e-01   p_cons 2.846667e-02   p_joint 9.045000e-02

Outputting figure to mutsig2_images.part000000000073/GPC3.6_1848_60000_0.27958_0.028467_0.09045.png
                gene_name: GPC3
               theta_stop: 0.093 
                    nperm: 60000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.028 
      ci_cons_bounds_left: 0.027 
     ci_cons_bounds_right: 0.030 
                  p_joint: 0.090 
     ci_joint_bounds_left: 0.088 
    ci_joint_bounds_right: 0.093 

Current progress: 12 percent done.
GPM6A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.641767e-02	ci left: 8.436649e-01	ci right 8.577302e-01	k: 8508	n:10000
Cons ci ratio: 2.191363e-02	ci left: 7.534265e-01	ci right 7.702207e-01	k: 7619	n:10000
KS ci ratio: 2.461427e-02	ci left: 7.082607e-01	ci right 7.260126e-01	k: 7172	n:10000
GPM6A   10000 perm   2 sec   (5748 perm/sec)   p_kst 7.172000e-01   p_cons 7.619000e-01   p_joint 8.508000e-01

Outputting figure to mutsig2_images.part000000000073/GPM6A.6_873_10000_0.7172_0.7619_0.8508.png
                gene_name: GPM6A
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 14 percent done.
GPNMB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.838763e-02	ci left: 2.387696e-01	ci right 2.557779e-01	k: 2472	n:10000
Cons ci ratio: 9.226475e-02	ci left: 1.458000e-01	ci right 1.600028e-01	k: 1528	n:10000
KS ci ratio: 7.023701e-02	ci left: 2.290880e-01	ci right 2.458652e-01	k: 2374	n:10000
GPNMB   10000 perm   2 sec   (5561 perm/sec)   p_kst 2.374000e-01   p_cons 1.528000e-01   p_joint 2.472000e-01

Outputting figure to mutsig2_images.part000000000073/GPNMB.6_1763_10000_0.2374_0.1528_0.2472.png
                gene_name: GPNMB
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 16 percent done.
GPR111
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.507844e-02	ci left: 4.207667e-01	ci right 4.402738e-01	k: 4305	n:10000
Cons ci ratio: 7.512432e-02	ci left: 2.058972e-01	ci right 2.220697e-01	k: 2139	n:10000
KS ci ratio: 3.737869e-02	ci left: 5.138555e-01	ci right 5.335307e-01	k: 5237	n:10000
GPR111   10000 perm   2 sec   (4182 perm/sec)   p_kst 5.237000e-01   p_cons 2.139000e-01   p_joint 4.305000e-01

Outputting figure to mutsig2_images.part000000000073/GPR111.6_1957_10000_0.5237_0.2139_0.4305.png
                gene_name: GPR111
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 18 percent done.
GPR125
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.144526e-02	ci left: 4.622748e-01	ci right 4.819415e-01	k: 4721	n:10000
Cons ci ratio: 7.067756e-03	ci left: 9.649925e-01	ci right 9.719311e-01	k: 9686	n:10000
KS ci ratio: 6.304674e-02	ci left: 2.699278e-01	ci right 2.876013e-01	k: 2787	n:10000
GPR125   10000 perm   2 sec   (4080 perm/sec)   p_kst 2.787000e-01   p_cons 9.686000e-01   p_joint 4.721000e-01

Outputting figure to mutsig2_images.part000000000073/GPR125.6_4042_10000_0.2787_0.9686_0.4721.png
                gene_name: GPR125
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 20 percent done.
GPR126
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.856597e-02	ci left: 8.090764e-01	ci right 8.243387e-01	k: 8168	n:10000
Cons ci ratio: 8.307184e-03	ci left: 9.529432e-01	ci right 9.609878e-01	k: 9571	n:10000
KS ci ratio: 3.837199e-02	ci left: 5.007505e-01	ci right 5.204433e-01	k: 5106	n:10000
GPR126   10000 perm   2 sec   (4486 perm/sec)   p_kst 5.106000e-01   p_cons 9.571000e-01   p_joint 8.168000e-01

Outputting figure to mutsig2_images.part000000000073/GPR126.6_3903_10000_0.5106_0.9571_0.8168.png
                gene_name: GPR126
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 22 percent done.
GPR174
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.514284e-02	ci left: 4.200689e-01	ci right 4.395720e-01	k: 4298	n:10000
Cons ci ratio: 8.117314e-02	ci left: 1.813680e-01	ci right 1.968136e-01	k: 1890	n:10000
KS ci ratio: 4.232008e-02	ci left: 4.518913e-01	ci right 4.715310e-01	k: 4617	n:10000
GPR174   10000 perm   2 sec   (5282 perm/sec)   p_kst 4.617000e-01   p_cons 1.890000e-01   p_joint 4.298000e-01

Outputting figure to mutsig2_images.part000000000073/GPR174.6_1006_10000_0.4617_0.189_0.4298.png
                gene_name: GPR174
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 24 percent done.
GPI
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.072707e-01	ci left: 1.114460e-01	ci right 1.241776e-01	k: 1177	n:10000
Cons ci ratio: 7.639762e-02	ci left: 2.003766e-01	ci right 2.163937e-01	k: 2083	n:10000
KS ci ratio: 1.208445e-01	ci left: 8.941891e-02	ci right 1.010181e-01	k: 951	n:10000
GPI   10000 perm   2 sec   (5453 perm/sec)   p_kst 9.510000e-02   p_cons 2.083000e-01   p_joint 1.177000e-01

Joint ci ratio: 8.068851e-02	ci left: 1.012751e-01	ci right 1.098399e-01	k: 2110	n:20000
Cons ci ratio: 5.684346e-02	ci left: 1.866108e-01	ci right 1.975789e-01	k: 3841	n:20000
KS ci ratio: 8.620424e-02	ci left: 8.964657e-02	ci right 9.777200e-02	k: 1873	n:20000
GPI   20000 perm   4 sec   (4924 perm/sec)   p_kst 9.365000e-02   p_cons 1.920500e-01   p_joint 1.055000e-01

Outputting figure to mutsig2_images.part000000000073/GPI.5_1870_20000_0.09365_0.19205_0.1055.png
                gene_name: GPI
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.094 
        ci_ks_bounds_left: 0.090 
       ci_ks_bounds_right: 0.098 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 26 percent done.
GPR116
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.788103e-02	ci left: 3.915733e-01	ci right 4.108842e-01	k: 4012	n:10000
Cons ci ratio: 6.352252e-03	ci left: 9.712187e-01	ci right 9.775008e-01	k: 9745	n:10000
KS ci ratio: 7.459246e-02	ci left: 2.082639e-01	ci right 2.245016e-01	k: 2163	n:10000
GPR116   10000 perm   3 sec   (3868 perm/sec)   p_kst 2.163000e-01   p_cons 9.745000e-01   p_joint 4.012000e-01

Outputting figure to mutsig2_images.part000000000073/GPR116.5_4121_10000_0.2163_0.9745_0.4012.png
                gene_name: GPR116
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 28 percent done.
GPR124
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.386443e-02	ci left: 1.414855e-01	ci right 1.555199e-01	k: 1484	n:10000
Cons ci ratio: 2.376668e-02	ci left: 7.223943e-01	ci right 7.398709e-01	k: 7312	n:10000
KS ci ratio: 1.245670e-01	ci left: 8.446093e-02	ci right 9.577916e-02	k: 900	n:10000
GPR124   10000 perm   2 sec   (4240 perm/sec)   p_kst 9.000000e-02   p_cons 7.312000e-01   p_joint 1.484000e-01

Joint ci ratio: 5.315312e-02	ci left: 2.080854e-01	ci right 2.194980e-01	k: 4275	n:20000
Cons ci ratio: 1.675456e-02	ci left: 7.262060e-01	ci right 7.385264e-01	k: 14648	n:20000
KS ci ratio: 8.697452e-02	ci left: 8.817594e-02	ci right 9.624307e-02	k: 1843	n:20000
GPR124   20000 perm   5 sec   (3985 perm/sec)   p_kst 9.215000e-02   p_cons 7.324000e-01   p_joint 2.137500e-01

Outputting figure to mutsig2_images.part000000000073/GPR124.5_4072_20000_0.09215_0.7324_0.21375.png
                gene_name: GPR124
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.092 
        ci_ks_bounds_left: 0.088 
       ci_ks_bounds_right: 0.096 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 30 percent done.
GPR149
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.987106e-02	ci left: 6.230635e-01	ci right 6.420592e-01	k: 6326	n:10000
Cons ci ratio: 3.161134e-02	ci left: 5.962428e-01	ci right 6.154955e-01	k: 6059	n:10000
KS ci ratio: 5.580505e-02	ci left: 3.210824e-01	ci right 3.396165e-01	k: 3303	n:10000
GPR149   10000 perm   2 sec   (4600 perm/sec)   p_kst 3.303000e-01   p_cons 6.059000e-01   p_joint 6.326000e-01

Outputting figure to mutsig2_images.part000000000073/GPR149.5_2212_10000_0.3303_0.6059_0.6326.png
                gene_name: GPR149
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 32 percent done.
GPR123
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.635411e-01	ci left: 5.460790e-03	ci right 8.835916e-03	k: 70	n:10000
Cons ci ratio: 9.687168e-02	ci left: 1.338424e-01	ci right 1.475676e-01	k: 1406	n:10000
KS ci ratio: 5.270911e-01	ci left: 4.059173e-03	ci right 7.040026e-03	k: 54	n:10000
GPR123   10000 perm   2 sec   (5991 perm/sec)   p_kst 5.400000e-03   p_cons 1.406000e-01   p_joint 7.000000e-03

Joint ci ratio: 2.924988e-01	ci left: 7.598793e-03	ci right 1.024694e-02	k: 177	n:20000
Cons ci ratio: 6.796664e-02	ci left: 1.377319e-01	ci right 1.474723e-01	k: 2851	n:20000
KS ci ratio: 3.509248e-01	ci left: 5.113783e-03	ci right 7.333458e-03	k: 123	n:20000
GPR123   20000 perm   4 sec   (5321 perm/sec)   p_kst 6.150000e-03   p_cons 1.425500e-01   p_joint 8.850000e-03

Joint ci ratio: 2.603472e-01	ci left: 6.523791e-03	ci right 8.506710e-03	k: 224	n:30000
Cons ci ratio: 5.846138e-02	ci left: 1.265100e-01	ci right 1.341618e-01	k: 3909	n:30000
KS ci ratio: 2.997923e-01	ci left: 4.817905e-03	ci right 6.546609e-03	k: 169	n:30000
GPR123   30000 perm   6 sec   (5047 perm/sec)   p_kst 5.633333e-03   p_cons 1.303000e-01   p_joint 7.466667e-03

Joint ci ratio: 2.258478e-01	ci left: 6.630713e-03	ci right 8.341955e-03	k: 298	n:40000
Cons ci ratio: 4.880603e-02	ci left: 1.354751e-01	ci right 1.422774e-01	k: 5554	n:40000
KS ci ratio: 2.641597e-01	ci left: 4.752104e-03	ci right 6.221092e-03	k: 218	n:40000
GPR123   40000 perm   8 sec   (4869 perm/sec)   p_kst 5.450000e-03   p_cons 1.388500e-01   p_joint 7.450000e-03

Joint ci ratio: 1.468011e-01	ci left: 1.302701e-02	ci right 1.510997e-02	k: 702	n:50000
Cons ci ratio: 4.349633e-02	ci left: 1.366921e-01	ci right 1.427898e-01	k: 6986	n:50000
KS ci ratio: 2.307230e-01	ci left: 5.077807e-03	ci right 6.420554e-03	k: 286	n:50000
GPR123   50000 perm   11 sec   (4736 perm/sec)   p_kst 5.720000e-03   p_cons 1.397200e-01   p_joint 1.404000e-02

Joint ci ratio: 1.498042e-01	ci left: 1.043752e-02	ci right 1.214358e-02	k: 676	n:60000
Cons ci ratio: 3.958701e-02	ci left: 1.376789e-01	ci right 1.432559e-01	k: 8427	n:60000
KS ci ratio: 2.145401e-01	ci left: 4.939689e-03	ci right 6.142233e-03	k: 331	n:60000
GPR123   60000 perm   13 sec   (4632 perm/sec)   p_kst 5.516667e-03   p_cons 1.404500e-01   p_joint 1.126667e-02

Joint ci ratio: 2.027003e-01	ci left: 4.775570e-03	ci right 5.866054e-03	k: 371	n:70000
Cons ci ratio: 3.660430e-02	ci left: 1.381887e-01	ci right 1.433554e-01	k: 9853	n:70000
KS ci ratio: 1.848154e-01	ci left: 5.795395e-03	ci right 6.988933e-03	k: 446	n:70000
GPR123   70000 perm   15 sec   (4536 perm/sec)   p_kst 6.371429e-03   p_cons 1.407571e-01   p_joint 5.300000e-03

Joint ci ratio: 1.565645e-01	ci left: 7.166003e-03	ci right 8.395097e-03	k: 621	n:80000
Cons ci ratio: 3.425740e-02	ci left: 1.382353e-01	ci right 1.430658e-01	k: 11251	n:80000
KS ci ratio: 1.711771e-01	ci left: 5.954849e-03	ci right 7.081387e-03	k: 520	n:80000
GPR123   80000 perm   18 sec   (4445 perm/sec)   p_kst 6.500000e-03   p_cons 1.406375e-01   p_joint 7.762500e-03

Joint ci ratio: 1.305986e-01	ci left: 9.263458e-03	ci right 1.056842e-02	k: 891	n:90000
Cons ci ratio: 3.230489e-02	ci left: 1.383240e-01	ci right 1.428770e-01	k: 12653	n:90000
KS ci ratio: 1.615436e-01	ci left: 5.974726e-03	ci right 7.035236e-03	k: 584	n:90000
GPR123   90000 perm   21 sec   (4360 perm/sec)   p_kst 6.488889e-03   p_cons 1.405889e-01   p_joint 9.900000e-03

Joint ci ratio: 1.255783e-01	ci left: 9.043659e-03	ci right 1.026503e-02	k: 964	n:100000
Cons ci ratio: 3.067632e-02	ci left: 1.382125e-01	ci right 1.425284e-01	k: 14036	n:100000
KS ci ratio: 1.553113e-01	ci left: 5.838195e-03	ci right 6.830766e-03	k: 632	n:100000
GPR123   100000 perm   23 sec   (4287 perm/sec)   p_kst 6.320000e-03   p_cons 1.403600e-01   p_joint 9.640000e-03

Joint ci ratio: 1.258314e-01	ci left: 8.194866e-03	ci right 9.303996e-03	k: 961	n:110000
Cons ci ratio: 2.925942e-02	ci left: 1.382255e-01	ci right 1.423390e-01	k: 15430	n:110000
KS ci ratio: 1.497483e-01	ci left: 5.727136e-03	ci right 6.662823e-03	k: 680	n:110000
GPR123   110000 perm   26 sec   (4217 perm/sec)   p_kst 6.181818e-03   p_cons 1.402727e-01   p_joint 8.736364e-03

Joint ci ratio: 1.280423e-01	ci left: 7.253533e-03	ci right 8.253809e-03	k: 929	n:120000
Cons ci ratio: 2.805820e-02	ci left: 1.379336e-01	ci right 1.418671e-01	k: 16787	n:120000
KS ci ratio: 1.429776e-01	ci left: 5.779751e-03	ci right 6.677696e-03	k: 746	n:120000
GPR123   120000 perm   29 sec   (4149 perm/sec)   p_kst 6.216667e-03   p_cons 1.398917e-01   p_joint 7.741667e-03

Joint ci ratio: 1.260490e-01	ci left: 6.918928e-03	ci right 7.857093e-03	k: 959	n:130000
Cons ci ratio: 2.801894e-02	ci left: 1.290250e-01	ci right 1.326992e-01	k: 17011	n:130000
KS ci ratio: 1.378190e-01	ci left: 5.758213e-03	ci right 6.617884e-03	k: 803	n:130000
GPR123   130000 perm   32 sec   (4081 perm/sec)   p_kst 6.176923e-03   p_cons 1.308538e-01   p_joint 7.376923e-03

Joint ci ratio: 1.024094e-01	ci left: 9.826443e-03	ci right 1.089398e-02	k: 1449	n:140000
Cons ci ratio: 2.697400e-02	ci left: 1.293077e-01	ci right 1.328504e-01	k: 18350	n:140000
KS ci ratio: 1.329485e-01	ci left: 5.760970e-03	ci right 6.588255e-03	k: 863	n:140000
GPR123   140000 perm   35 sec   (4009 perm/sec)   p_kst 6.164286e-03   p_cons 1.310714e-01   p_joint 1.035000e-02

Joint ci ratio: 9.950708e-02	ci left: 9.730180e-03	ci right 1.075555e-02	k: 1535	n:150000
Cons ci ratio: 2.608899e-02	ci left: 1.291107e-01	ci right 1.325302e-01	k: 19622	n:150000
KS ci ratio: 1.289823e-01	ci left: 5.725104e-03	ci right 6.520834e-03	k: 917	n:150000
GPR123   150000 perm   38 sec   (3946 perm/sec)   p_kst 6.113333e-03   p_cons 1.308133e-01   p_joint 1.023333e-02

Joint ci ratio: 8.644981e-02	ci left: 1.213869e-02	ci right 1.324157e-02	k: 2029	n:160000
Cons ci ratio: 2.527529e-02	ci left: 1.290333e-01	ci right 1.323426e-01	k: 20909	n:160000
KS ci ratio: 1.260709e-01	ci left: 5.627444e-03	ci right 6.390624e-03	k: 960	n:160000
GPR123   160000 perm   41 sec   (3886 perm/sec)   p_kst 6.000000e-03   p_cons 1.306812e-01   p_joint 1.268125e-02

Joint ci ratio: 8.641789e-02	ci left: 1.144174e-02	ci right 1.248088e-02	k: 2032	n:170000
Cons ci ratio: 2.454598e-02	ci left: 1.288494e-01	ci right 1.320573e-01	k: 22176	n:170000
KS ci ratio: 1.218909e-01	ci left: 5.678323e-03	ci right 6.421027e-03	k: 1027	n:170000
GPR123   170000 perm   44 sec   (3828 perm/sec)   p_kst 6.041176e-03   p_cons 1.304471e-01   p_joint 1.195294e-02

Joint ci ratio: 7.951480e-02	ci left: 1.279220e-02	ci right 1.385689e-02	k: 2397	n:180000
Cons ci ratio: 2.389159e-02	ci left: 1.285435e-01	ci right 1.316573e-01	k: 23417	n:180000
KS ci ratio: 1.188125e-01	ci left: 5.653825e-03	ci right 6.373336e-03	k: 1081	n:180000
GPR123   180000 perm   48 sec   (3767 perm/sec)   p_kst 6.005556e-03   p_cons 1.300944e-01   p_joint 1.331667e-02

Joint ci ratio: 7.855367e-02	ci left: 1.242838e-02	ci right 1.344972e-02	k: 2457	n:190000
Cons ci ratio: 2.326627e-02	ci left: 1.284699e-01	ci right 1.314993e-01	k: 24696	n:190000
KS ci ratio: 1.150929e-01	ci left: 5.719019e-03	ci right 6.422495e-03	k: 1152	n:190000
GPR123   190000 perm   52 sec   (3675 perm/sec)   p_kst 6.063158e-03   p_cons 1.299789e-01   p_joint 1.293158e-02

Joint ci ratio: 8.137354e-02	ci left: 1.100302e-02	ci right 1.194122e-02	k: 2293	n:200000
Cons ci ratio: 2.268610e-02	ci left: 1.284195e-01	ci right 1.313712e-01	k: 25978	n:200000
KS ci ratio: 1.120712e-01	ci left: 5.739123e-03	ci right 6.425311e-03	k: 1215	n:200000
GPR123   200000 perm   55 sec   (3624 perm/sec)   p_kst 6.075000e-03   p_cons 1.298900e-01   p_joint 1.146500e-02

Joint ci ratio: 8.583792e-02	ci left: 9.411038e-03	ci right 1.025972e-02	k: 2064	n:210000
Cons ci ratio: 2.212909e-02	ci left: 1.285596e-01	ci right 1.314411e-01	k: 27299	n:210000
KS ci ratio: 1.092756e-01	ci left: 5.757530e-03	ci right 6.427642e-03	k: 1278	n:210000
GPR123   210000 perm   59 sec   (3577 perm/sec)   p_kst 6.085714e-03   p_cons 1.299952e-01   p_joint 9.828571e-03

Joint ci ratio: 9.199056e-02	ci left: 7.809612e-03	ci right 8.567068e-03	k: 1800	n:220000
Cons ci ratio: 2.163379e-02	ci left: 1.284525e-01	ci right 1.312663e-01	k: 28568	n:220000
KS ci ratio: 1.068798e-01	ci left: 5.752333e-03	ci right 6.406238e-03	k: 1336	n:220000
GPR123   220000 perm   62 sec   (3523 perm/sec)   p_kst 6.072727e-03   p_cons 1.298545e-01   p_joint 8.181818e-03

Joint ci ratio: 9.348322e-02	ci left: 7.232131e-03	ci right 7.945580e-03	k: 1744	n:230000
Cons ci ratio: 2.115566e-02	ci left: 1.285112e-01	ci right 1.312633e-01	k: 29873	n:230000
KS ci ratio: 1.045973e-01	ci left: 5.751969e-03	ci right 6.391010e-03	k: 1395	n:230000
GPR123   230000 perm   66 sec   (3478 perm/sec)   p_kst 6.065217e-03   p_cons 1.298826e-01   p_joint 7.582609e-03

Joint ci ratio: 9.209953e-02	ci left: 7.146486e-03	ci right 7.840488e-03	k: 1797	n:240000
Cons ci ratio: 2.072317e-02	ci left: 1.283997e-01	ci right 1.310926e-01	k: 31138	n:240000
KS ci ratio: 1.020676e-01	ci left: 5.796439e-03	ci right 6.423912e-03	k: 1465	n:240000
GPR123   240000 perm   70 sec   (3434 perm/sec)   p_kst 6.104167e-03   p_cons 1.297417e-01   p_joint 7.487500e-03

Joint ci ratio: 9.045595e-02	ci left: 7.118596e-03	ci right 7.796899e-03	k: 1863	n:250000
Cons ci ratio: 2.029637e-02	ci left: 1.285167e-01	ci right 1.311559e-01	k: 32458	n:250000
KS ci ratio: 1.000741e-01	ci left: 5.794616e-03	ci right 6.408919e-03	k: 1524	n:250000
GPR123   250000 perm   74 sec   (3391 perm/sec)   p_kst 6.096000e-03   p_cons 1.298320e-01   p_joint 7.452000e-03

Joint ci ratio: 8.017059e-02	ci left: 8.746093e-03	ci right 9.480297e-03	k: 2368	n:260000
Cons ci ratio: 1.990032e-02	ci left: 1.285640e-01	ci right 1.311520e-01	k: 33762	n:260000
KS ci ratio: 9.825546e-02	ci left: 5.785538e-03	ci right 6.387091e-03	k: 1581	n:260000
GPR123   260000 perm   78 sec   (3349 perm/sec)   p_kst 6.080769e-03   p_cons 1.298538e-01   p_joint 9.107692e-03

Outputting figure to mutsig2_images.part000000000073/GPR123.3_1707_260000_0.0060808_0.12985_0.0091077.png
                gene_name: GPR123
               theta_stop: 0.098 
                    nperm: 260000 
                     p_ks: 0.0061 
        ci_ks_bounds_left: 0.0058 
       ci_ks_bounds_right: 0.0064 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.0091 
     ci_joint_bounds_left: 0.0087 
    ci_joint_bounds_right: 0.0095 

Current progress: 34 percent done.
GPR137B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.100173e-02	ci left: 2.252368e-01	ci right 2.419187e-01	k: 2335	n:10000
Cons ci ratio: 1.019918e-01	ci left: 1.220977e-01	ci right 1.353194e-01	k: 1286	n:10000
KS ci ratio: 5.427694e-02	ci left: 3.333947e-01	ci right 3.520970e-01	k: 3427	n:10000
GPR137B   10000 perm   2 sec   (6214 perm/sec)   p_kst 3.427000e-01   p_cons 1.286000e-01   p_joint 2.335000e-01

Joint ci ratio: 4.149421e-02	ci left: 3.021021e-01	ci right 3.149536e-01	k: 6170	n:20000
Cons ci ratio: 7.221701e-02	ci left: 1.237437e-01	ci right 1.330646e-01	k: 2567	n:20000
KS ci ratio: 4.040173e-02	ci left: 3.135366e-01	ci right 3.265157e-01	k: 6400	n:20000
GPR137B   20000 perm   4 sec   (5526 perm/sec)   p_kst 3.200000e-01   p_cons 1.283500e-01   p_joint 3.085000e-01

Outputting figure to mutsig2_images.part000000000073/GPR137B.4_1228_20000_0.32_0.12835_0.3085.png
                gene_name: GPR137B
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 36 percent done.
GPR141
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.034183e-02	ci left: 6.157275e-01	ci right 6.347995e-01	k: 6253	n:10000
Cons ci ratio: 5.931317e-02	ci left: 2.948935e-01	ci right 3.130208e-01	k: 3039	n:10000
KS ci ratio: 3.258635e-02	ci left: 5.815895e-01	ci right 6.009573e-01	k: 5913	n:10000
GPR141   10000 perm   2 sec   (5872 perm/sec)   p_kst 5.913000e-01   p_cons 3.039000e-01   p_joint 6.253000e-01

Outputting figure to mutsig2_images.part000000000073/GPR141.4_922_10000_0.5913_0.3039_0.6253.png
                gene_name: GPR141
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.63 

Current progress: 38 percent done.
GPR15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.980742e-02	ci left: 3.728605e-01	ci right 3.920080e-01	k: 3824	n:10000
Cons ci ratio: 6.929979e-02	ci left: 2.339280e-01	ci right 2.508223e-01	k: 2423	n:10000
KS ci ratio: 4.255920e-02	ci left: 4.490965e-01	ci right 4.687274e-01	k: 4589	n:10000
GPR15   10000 perm   2 sec   (5664 perm/sec)   p_kst 4.589000e-01   p_cons 2.423000e-01   p_joint 3.824000e-01

Outputting figure to mutsig2_images.part000000000073/GPR15.4_1085_10000_0.4589_0.2423_0.3824.png
                gene_name: GPR15
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 40 percent done.
GPR156
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.388375e-02	ci left: 5.625333e-01	ci right 5.820246e-01	k: 5723	n:10000
Cons ci ratio: 3.530301e-02	ci left: 5.422895e-01	ci right 5.618801e-01	k: 5521	n:10000
KS ci ratio: 4.558764e-02	ci left: 4.152841e-01	ci right 4.347596e-01	k: 4250	n:10000
GPR156   10000 perm   2 sec   (5264 perm/sec)   p_kst 4.250000e-01   p_cons 5.521000e-01   p_joint 5.723000e-01

Outputting figure to mutsig2_images.part000000000073/GPR156.4_2481_10000_0.425_0.5521_0.5723.png
                gene_name: GPR156
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 42 percent done.
GPR17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.462890e-02	ci left: 8.712206e-01	ci right 8.841585e-01	k: 8778	n:10000
KS ci ratio: 3.038716e-02	ci left: 6.150242e-01	ci right 6.341032e-01	k: 6246	n:10000
GPR17   10000 perm   2 sec   (5979 perm/sec)   p_kst 6.246000e-01   p_cons 8.778000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000073/GPR17.4_1112_10000_0.6246_0.8778_1.png
                gene_name: GPR17
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 44 percent done.
GPN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.021878e-02	ci left: 1.515885e-01	ci right 1.660108e-01	k: 1587	n:10000
Cons ci ratio: 9.457605e-02	ci left: 1.396231e-01	ci right 1.535834e-01	k: 1465	n:10000
KS ci ratio: 9.922299e-02	ci left: 1.282615e-01	ci right 1.417519e-01	k: 1349	n:10000
GPN1   10000 perm   2 sec   (6065 perm/sec)   p_kst 1.349000e-01   p_cons 1.465000e-01   p_joint 1.587000e-01

Outputting figure to mutsig2_images.part000000000073/GPN1.3_1306_10000_0.1349_0.1465_0.1587.png
                gene_name: GPN1
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.17 

Current progress: 46 percent done.
GPR110
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.341748e-02	ci left: 4.392173e-01	ci right 4.588124e-01	k: 4490	n:10000
Cons ci ratio: 1.651450e-02	ci left: 8.421365e-01	ci right 8.562594e-01	k: 8493	n:10000
KS ci ratio: 6.169492e-02	ci left: 2.786422e-01	ci right 2.964817e-01	k: 2875	n:10000
GPR110   10000 perm   2 sec   (5481 perm/sec)   p_kst 2.875000e-01   p_cons 8.493000e-01   p_joint 4.490000e-01

Outputting figure to mutsig2_images.part000000000073/GPR110.3_2839_10000_0.2875_0.8493_0.449.png
                gene_name: GPR110
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 48 percent done.
GPR137C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.404887e-02	ci left: 3.352819e-01	ci right 3.540087e-01	k: 3446	n:10000
Cons ci ratio: 7.208946e-02	ci left: 2.199059e-01	ci right 2.364527e-01	k: 2281	n:10000
KS ci ratio: 7.128045e-02	ci left: 2.238545e-01	ci right 2.405018e-01	k: 2321	n:10000
GPR137C   10000 perm   2 sec   (6271 perm/sec)   p_kst 2.321000e-01   p_cons 2.281000e-01   p_joint 3.446000e-01

Outputting figure to mutsig2_images.part000000000073/GPR137C.3_1318_10000_0.2321_0.2281_0.3446.png
                gene_name: GPR137C
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 50 percent done.
GPR142
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.020443e-03	ci left: 9.558684e-01	ci right 9.636608e-01	k: 9599	n:10000
KS ci ratio: 4.803364e-03	ci left: 9.827447e-01	ci right 9.875666e-01	k: 9853	n:10000
GPR142   10000 perm   2 sec   (6555 perm/sec)   p_kst 9.853000e-01   p_cons 9.599000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000073/GPR142.3_1405_10000_0.9853_0.9599_1.png
                gene_name: GPR142
               theta_stop: 0.0080 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 52 percent done.
GPR153
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.416858e-02	ci left: 8.780732e-01	ci right 8.907019e-01	k: 8845	n:10000
Cons ci ratio: 1.570673e-02	ci left: 8.547786e-01	ci right 8.684100e-01	k: 8617	n:10000
KS ci ratio: 4.407262e-02	ci left: 4.318355e-01	ci right 4.513986e-01	k: 4416	n:10000
GPR153   10000 perm   2 sec   (5972 perm/sec)   p_kst 4.416000e-01   p_cons 8.617000e-01   p_joint 8.845000e-01

Outputting figure to mutsig2_images.part000000000073/GPR153.3_1850_10000_0.4416_0.8617_0.8845.png
                gene_name: GPR153
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 54 percent done.
GPR179
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.375114e-02	ci left: 3.377653e-01	ci right 3.565238e-01	k: 3471	n:10000
KS ci ratio: 1.673957e-02	ci left: 8.385712e-01	ci right 8.528268e-01	k: 8458	n:10000
GPR179   10000 perm   2 sec   (4218 perm/sec)   p_kst 8.458000e-01   p_cons 3.471000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000073/GPR179.3_7148_10000_0.8458_0.3471_1.png
                gene_name: GPR179
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 56 percent done.
GPC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.014424e-02	ci left: 7.829981e-01	ci right 7.990320e-01	k: 7911	n:10000
KS ci ratio: 2.139402e-02	ci left: 7.621300e-01	ci right 7.787122e-01	k: 7705	n:10000
GPC2   10000 perm   2 sec   (5807 perm/sec)   p_kst 7.705000e-01   p_cons 7.911000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000073/GPC2.2_1780_10000_0.7705_0.7911_1.png
                gene_name: GPC2
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 58 percent done.
GPC6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.467229e-02	ci left: 5.512068e-01	ci right 5.707577e-01	k: 5610	n:10000
KS ci ratio: 1.268989e-02	ci left: 8.992899e-01	ci right 9.108729e-01	k: 9052	n:10000
GPC6   10000 perm   2 sec   (5868 perm/sec)   p_kst 9.052000e-01   p_cons 5.610000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000073/GPC6.2_1704_10000_0.9052_0.561_1.png
                gene_name: GPC6
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 60 percent done.
GPD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.842084e-03	ci left: 9.576469e-01	ci right 9.652813e-01	k: 9616	n:10000
KS ci ratio: 3.439163e-02	ci left: 5.552156e-01	ci right 5.747465e-01	k: 5650	n:10000
GPD2   10000 perm   2 sec   (5802 perm/sec)   p_kst 5.650000e-01   p_cons 9.616000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000073/GPD2.2_2248_10000_0.565_0.9616_1.png
                gene_name: GPD2
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
GPER
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.661160e-02	ci left: 6.752890e-01	ci right 6.936034e-01	k: 6845	n:10000
KS ci ratio: 5.457943e-02	ci left: 3.309118e-01	ci right 3.495813e-01	k: 3402	n:10000
GPER   10000 perm   2 sec   (6477 perm/sec)   p_kst 3.402000e-01   p_cons 6.845000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000073/GPER.2_1132_10000_0.3402_0.6845_1.png
                gene_name: GPER
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 64 percent done.
GPHB5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.003386e-02	ci left: 4.795567e-01	ci right 4.992495e-01	k: 4894	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
GPHB5   10000 perm   1 sec   (7039 perm/sec)   p_kst 1   p_cons 4.894000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000073/GPHB5.2_284_10000_1_0.4894_1.png
                gene_name: GPHB5
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 66 percent done.
GPHN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.337237e-03	ci left: 9.856678e-01	ci right 9.900411e-01	k: 9880	n:10000
Cons ci ratio: 5.792695e-02	ci left: 3.049087e-01	ci right 3.231997e-01	k: 3140	n:10000
KS ci ratio: 6.077436e-02	ci left: 2.847843e-01	ci right 3.027359e-01	k: 2937	n:10000
GPHN   10000 perm   2 sec   (5032 perm/sec)   p_kst 2.937000e-01   p_cons 3.140000e-01   p_joint 9.880000e-01

Outputting figure to mutsig2_images.part000000000073/GPHN.2_2402_10000_0.2937_0.314_0.988.png
                gene_name: GPHN
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 68 percent done.
GPR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.968308e-02	ci left: 4.839539e-01	ci right 5.036497e-01	k: 4938	n:10000
KS ci ratio: 1.142247e-02	ci left: 9.163640e-01	ci right 9.269888e-01	k: 9218	n:10000
GPR1   10000 perm   2 sec   (5981 perm/sec)   p_kst 9.218000e-01   p_cons 4.938000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000073/GPR1.2_1072_10000_0.9218_0.4938_1.png
                gene_name: GPR1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
GPR109B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.660662e-02	ci left: 1.994895e-01	ci right 2.154812e-01	k: 2074	n:10000
Cons ci ratio: 2.004063e-02	ci left: 7.847215e-01	ci right 8.007076e-01	k: 7928	n:10000
KS ci ratio: 9.639384e-02	ci left: 1.350178e-01	ci right 1.487915e-01	k: 1418	n:10000
GPR109B   10000 perm   1 sec   (6720 perm/sec)   p_kst 1.418000e-01   p_cons 7.928000e-01   p_joint 2.074000e-01

Outputting figure to mutsig2_images.part000000000073/GPR109B.2_1168_10000_0.1418_0.7928_0.2074.png
                gene_name: GPR109B
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 72 percent done.
GPR114
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.334593e-02	ci left: 2.680468e-01	ci right 2.856834e-01	k: 2768	n:10000
Cons ci ratio: 7.317031e-02	ci left: 2.147744e-01	ci right 2.311873e-01	k: 2229	n:10000
KS ci ratio: 2.662392e-02	ci left: 6.750875e-01	ci right 6.934051e-01	k: 6843	n:10000
GPR114   10000 perm   2 sec   (6243 perm/sec)   p_kst 6.843000e-01   p_cons 2.229000e-01   p_joint 2.768000e-01

Outputting figure to mutsig2_images.part000000000073/GPR114.2_1631_10000_0.6843_0.2229_0.2768.png
                gene_name: GPR114
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 74 percent done.
GPR12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.049148e-02	ci left: 1.839270e-01	ci right 1.994530e-01	k: 1916	n:10000
KS ci ratio: 4.122148e-02	ci left: 4.649712e-01	ci right 4.846435e-01	k: 4748	n:10000
GPR12   10000 perm   2 sec   (6566 perm/sec)   p_kst 4.748000e-01   p_cons 1.916000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000073/GPR12.2_1009_10000_0.4748_0.1916_1.png
                gene_name: GPR12
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
GPR133
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.927630e-02	ci left: 6.324129e-01	ci right 6.513044e-01	k: 6419	n:10000
Cons ci ratio: 3.649665e-02	ci left: 5.257659e-01	ci right 5.454134e-01	k: 5356	n:10000
KS ci ratio: 5.383424e-02	ci left: 3.370699e-01	ci right 3.558196e-01	k: 3464	n:10000
GPR133   10000 perm   2 sec   (5765 perm/sec)   p_kst 3.464000e-01   p_cons 5.356000e-01   p_joint 6.419000e-01

Outputting figure to mutsig2_images.part000000000073/GPR133.2_2725_10000_0.3464_0.5356_0.6419.png
                gene_name: GPR133
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 78 percent done.
GPR135
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.855114e-02	ci left: 3.003467e-01	ci right 3.185644e-01	k: 3094	n:10000
Cons ci ratio: 7.130045e-02	ci left: 2.237558e-01	ci right 2.404006e-01	k: 2320	n:10000
KS ci ratio: 3.663624e-02	ci left: 5.238638e-01	ci right 5.435165e-01	k: 5337	n:10000
GPR135   10000 perm   2 sec   (6243 perm/sec)   p_kst 5.337000e-01   p_cons 2.320000e-01   p_joint 3.094000e-01

Outputting figure to mutsig2_images.part000000000073/GPR135.2_1489_10000_0.5337_0.232_0.3094.png
                gene_name: GPR135
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 80 percent done.
GPR139
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.239472e-02	ci left: 2.740864e-01	ci right 2.918402e-01	k: 2829	n:10000
KS ci ratio: 4.310302e-02	ci left: 4.428093e-01	ci right 4.624183e-01	k: 4526	n:10000
GPR139   10000 perm   2 sec   (6534 perm/sec)   p_kst 4.526000e-01   p_cons 2.829000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000073/GPR139.2_1070_10000_0.4526_0.2829_1.png
                gene_name: GPR139
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
GPR143
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.104208e-02	ci left: 3.614212e-01	ci right 3.804540e-01	k: 3709	n:10000
Cons ci ratio: 2.983895e-02	ci left: 6.235661e-01	ci right 6.425563e-01	k: 6331	n:10000
KS ci ratio: 1.323001e-01	ci left: 7.533730e-02	ci right 8.610844e-02	k: 806	n:10000
GPR143   10000 perm   2 sec   (6515 perm/sec)   p_kst 8.060000e-02   p_cons 6.331000e-01   p_joint 3.709000e-01

Joint ci ratio: 2.423360e-02	ci left: 5.598482e-01	ci right 5.736324e-01	k: 11335	n:20000
Cons ci ratio: 2.163487e-02	ci left: 6.146356e-01	ci right 6.281291e-01	k: 12428	n:20000
KS ci ratio: 9.317593e-02	ci left: 7.749952e-02	ci right 8.512273e-02	k: 1625	n:20000
GPR143   20000 perm   3 sec   (5729 perm/sec)   p_kst 8.125000e-02   p_cons 6.214000e-01   p_joint 5.667500e-01

Outputting figure to mutsig2_images.part000000000073/GPR143.2_1251_20000_0.08125_0.6214_0.56675.png
                gene_name: GPR143
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.081 
        ci_ks_bounds_left: 0.077 
       ci_ks_bounds_right: 0.085 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.57 

Current progress: 84 percent done.
GPR148
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.748407e-02	ci left: 6.610882e-01	ci right 6.796124e-01	k: 6704	n:10000
Cons ci ratio: 4.076971e-02	ci left: 4.704647e-01	ci right 4.901468e-01	k: 4803	n:10000
KS ci ratio: 9.495584e-02	ci left: 1.386431e-01	ci right 1.525641e-01	k: 1455	n:10000
GPR148   10000 perm   1 sec   (6771 perm/sec)   p_kst 1.455000e-01   p_cons 4.803000e-01   p_joint 6.704000e-01

Outputting figure to mutsig2_images.part000000000073/GPR148.2_1048_10000_0.1455_0.4803_0.6704.png
                gene_name: GPR148
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 86 percent done.
GPR157
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.420760e-02	ci left: 1.705475e-01	ci right 1.856405e-01	k: 1780	n:10000
Cons ci ratio: 1.028186e-01	ci left: 1.203376e-01	ci right 1.334806e-01	k: 1268	n:10000
KS ci ratio: 5.386991e-02	ci left: 3.367719e-01	ci right 3.555178e-01	k: 3461	n:10000
GPR157   10000 perm   1 sec   (6670 perm/sec)   p_kst 3.461000e-01   p_cons 1.268000e-01   p_joint 1.780000e-01

Joint ci ratio: 5.921117e-02	ci left: 1.744008e-01	ci right 1.850924e-01	k: 3594	n:20000
Cons ci ratio: 7.285306e-02	ci left: 1.218242e-01	ci right 1.310847e-01	k: 2528	n:20000
KS ci ratio: 3.829878e-02	ci left: 3.371159e-01	ci right 3.503296e-01	k: 6874	n:20000
GPR157   20000 perm   3 sec   (5858 perm/sec)   p_kst 3.437000e-01   p_cons 1.264000e-01   p_joint 1.797000e-01

Outputting figure to mutsig2_images.part000000000073/GPR157.2_1024_20000_0.3437_0.1264_0.1797.png
                gene_name: GPR157
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.19 

Current progress: 88 percent done.
GPR161
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.918346e-02	ci left: 7.989230e-01	ci right 8.144979e-01	k: 8068	n:10000
KS ci ratio: 3.637213e-02	ci left: 5.274678e-01	ci right 5.471105e-01	k: 5373	n:10000
GPR161   10000 perm   2 sec   (6551 perm/sec)   p_kst 5.373000e-01   p_cons 8.068000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000073/GPR161.2_1610_10000_0.5373_0.8068_1.png
                gene_name: GPR161
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
GPR171
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.798239e-02	ci left: 5.058516e-01	ci right 5.255392e-01	k: 5157	n:10000
KS ci ratio: 2.616291e-02	ci left: 6.826450e-01	ci right 7.008432e-01	k: 6918	n:10000
GPR171   10000 perm   1 sec   (6713 perm/sec)   p_kst 6.918000e-01   p_cons 5.157000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000073/GPR171.2_964_10000_0.6918_0.5157_1.png
                gene_name: GPR171
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
GPR18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.944755e-02	ci left: 7.945595e-01	ci right 8.102639e-01	k: 8025	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
GPR18   10000 perm   1 sec   (6978 perm/sec)   p_kst 1   p_cons 8.025000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000073/GPR18.2_1000_10000_1_0.8025_1.png
                gene_name: GPR18
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
GPR180
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.358687e-02	ci left: 8.865717e-01	ci right 8.987985e-01	k: 8928	n:10000
Cons ci ratio: 4.660958e-02	ci left: 4.045217e-01	ci right 4.239283e-01	k: 4142	n:10000
KS ci ratio: 3.895970e-02	ci left: 4.931507e-01	ci right 5.128476e-01	k: 5030	n:10000
GPR180   10000 perm   2 sec   (6221 perm/sec)   p_kst 5.030000e-01   p_cons 4.142000e-01   p_joint 8.928000e-01

Outputting figure to mutsig2_images.part000000000073/GPR180.2_1359_10000_0.503_0.4142_0.8928.png
                gene_name: GPR180
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 96 percent done.
GPR20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.073150e-02	ci left: 6.096996e-01	ci right 6.288309e-01	k: 6193	n:10000
KS ci ratio: 1.009287e-02	ci left: 9.329910e-01	ci right 9.425521e-01	k: 9379	n:10000
GPR20   10000 perm   2 sec   (6618 perm/sec)   p_kst 9.379000e-01   p_cons 6.193000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000073/GPR20.2_1081_10000_0.9379_0.6193_1.png
                gene_name: GPR20
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
GPR26
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.853449e-02	ci left: 1.565950e-01	ci right 1.712014e-01	k: 1638	n:10000
Cons ci ratio: 1.017651e-01	ci left: 1.225867e-01	ci right 1.358301e-01	k: 1291	n:10000
KS ci ratio: 2.945480e-02	ci left: 6.295976e-01	ci right 6.485213e-01	k: 6391	n:10000
GPR26   10000 perm   1 sec   (6826 perm/sec)   p_kst 6.391000e-01   p_cons 1.291000e-01   p_joint 1.638000e-01

Joint ci ratio: 3.810435e-02	ci left: 3.394051e-01	ci right 3.526397e-01	k: 6920	n:20000
Cons ci ratio: 7.224929e-02	ci left: 1.236453e-01	ci right 1.329631e-01	k: 2565	n:20000
KS ci ratio: 2.079252e-02	ci left: 6.332023e-01	ci right 6.465570e-01	k: 12798	n:20000
GPR26   20000 perm   3 sec   (5933 perm/sec)   p_kst 6.399000e-01   p_cons 1.282500e-01   p_joint 3.460000e-01

Outputting figure to mutsig2_images.part000000000073/GPR26.2_1026_20000_0.6399_0.12825_0.346.png
                gene_name: GPR26
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000073
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 73 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1655>
Subject: Job 8004123: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1655>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000074> was used as the working directory.
Started at Sun Nov 11 15:06:24 2012
Results reported at Sun Nov 11 15:19:55 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000074.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000074.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 74  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000074.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    855.60 sec.
    Max Memory :      4833 MB
    Max Swap   :      7188 MB

    Max Processes  :         7
    Max Threads    :        60

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
74
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 74
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 74: processing genes 6605 - 6695
Calculating significance of each gene.
Using projection method.
6605	GPR32	1
6606	GPR34	6.585805e-01
6607	GPR35	6.506976e-01
6608	GPR37	8.462127e-01
6609	GPR37L1	6.660950e-01
6610	GPR39	5.302205e-01
6611	GPR4	1
6612	GPR45	7.104178e-02
6613	GPR50	3.794453e-01
6614	GPR52	1
6615	GPR55	1
6616	GPR56	1
6617	GPR6	4.482904e-01
6618	GPR61	5.363031e-01
6619	GPR62	1
6620	GPR63	4.577654e-01
6621	GPR64	1
6622	GPR65	1.478609e-01
6623	GPR68	3.895743e-01
6624	GPR75	6.499547e-01
6625	GPR77	1.638397e-01
6626	GPR78	1.898989e-01
6627	GPR81	6.611827e-01
6628	GPR82	4.438835e-01
6629	GPR83	1
6630	GPR84	1
6631	GPR85	2.860703e-01
6632	GPR87	4.675498e-02
6633	GPR88	1
6634	GPR89A	1
6635	GPR89B	1
6636	GPR97	3.980645e-01
6637	GPR98	9.999997e-01
6638	GPRASP1	9.881137e-01
6639	GPRASP2	5.567509e-01
6640	GPRC5A	7.191650e-01
6641	GPRC5B	1
6642	GPRC5C	1.469338e-01
6643	GPRC5D	1
6644	GPRC6A	9.147786e-01
6645	GPRIN1	8.285464e-01
6646	GPRIN2	1.905600e-01
6647	GPRIN3	1.004667e-01
6648	GPS1	8.412618e-01
6649	GPS2	1
6650	GPSM1	7.319422e-01
6651	GPSM2	6.183660e-01
6652	GPSM3	1
6653	GPT	7.596961e-01
6654	GPT2	4.294238e-01
6655	GPX1	1
6656	GPX2	1
6657	GPX3	1
6658	GPX4	1
6659	GPX5	2.125473e-01
6660	GPX6	2.222607e-01
6661	GPX7	1
6662	GPX8	5.682151e-01
6663	GRAMD1A	6.733608e-01
6664	GRAMD1B	2.743943e-02
6665	GRAMD1C	1
6666	GRAMD2	1
6667	GRAMD3	8.294782e-01
6668	GRAMD4	5.694682e-01
6669	GRAP	1
6670	GRAP2	1
6671	GRASP	2.154129e-01
6672	GRB10	1
6673	GRB14	5.991121e-02
6674	GRB2	1
6675	GRB7	1
6676	GREB1	1.888922e-01
6677	GREM1	1.535767e-01
6678	GREM2	2.149063e-02
6679	GRHL1	8.338370e-01
6680	GRHL2	7.567954e-01
6681	GRHL3	5.790907e-01
6682	GRHPR	2.399261e-01
6683	GRIA1	7.327128e-03
6684	GRIA2	6.956440e-01
6685	GRIA3	1.727594e-01
6686	GRIA4	1.653888e-01
6687	GRID1	9.909232e-03
6688	GRID2	3.799455e-03
6689	GRIK1	8.956636e-01
6690	GRIK2	1.778995e-02
6691	GRIK3	3.185463e-01
6692	GRIK4	8.180067e-01
6693	GRIK5	7.677446e-01
6694	GRIN1	9.448262e-01
6695	GRIN2A	9.963956e-01
Done

Running MutSig 2:
Scatter job 74: processing genes 6605 - 6695
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
GPR98
Processing conservation and coverage...
51% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.587123e-01	ci left: 9.685560e-03	ci right 1.400583e-02	k: 117	n:10000
Cons ci ratio: 5.964782e-01	ci left: 3.028617e-03	ci right 5.672985e-03	k: 42	n:10000
KS ci ratio: 1.117267e-01	ci left: 1.034441e-01	ci right 1.157844e-01	k: 1095	n:10000
GPR98   10000 perm   4 sec   (2230 perm/sec)   p_kst 1.095000e-01   p_cons 4.200000e-03   p_joint 1.170000e-02

Joint ci ratio: 3.453633e-01	ci left: 5.296378e-03	ci right 7.550737e-03	k: 127	n:20000
Cons ci ratio: 5.230852e-01	ci left: 2.072328e-03	ci right 3.578018e-03	k: 55	n:20000
KS ci ratio: 8.041197e-02	ci left: 1.019135e-01	ci right 1.105014e-01	k: 2123	n:20000
GPR98   20000 perm   11 sec   (1756 perm/sec)   p_kst 1.061500e-01   p_cons 2.750000e-03   p_joint 6.350000e-03

Joint ci ratio: 3.484815e-01	ci left: 3.469451e-03	ci right 4.962414e-03	k: 125	n:30000
Cons ci ratio: 3.697070e-01	ci left: 3.044727e-03	ci right 4.454070e-03	k: 111	n:30000
KS ci ratio: 6.472837e-02	ci left: 1.053963e-01	ci right 1.124797e-01	k: 3267	n:30000
GPR98   30000 perm   16 sec   (1825 perm/sec)   p_kst 1.089000e-01   p_cons 3.700000e-03   p_joint 4.166667e-03

Joint ci ratio: 2.588642e-01	ci left: 4.962423e-03	ci right 6.460707e-03	k: 227	n:40000
Cons ci ratio: 3.331123e-01	ci left: 2.876268e-03	ci right 4.047646e-03	k: 137	n:40000
KS ci ratio: 5.683794e-02	ci left: 1.032463e-01	ci right 1.093110e-01	k: 4250	n:40000
GPR98   40000 perm   22 sec   (1851 perm/sec)   p_kst 1.062500e-01   p_cons 3.425000e-03   p_joint 5.675000e-03

Joint ci ratio: 2.415407e-01	ci left: 4.607237e-03	ci right 5.891235e-03	k: 261	n:50000
Cons ci ratio: 2.892411e-01	ci left: 3.131130e-03	ci right 4.207761e-03	k: 182	n:50000
KS ci ratio: 5.074006e-02	ci left: 1.039277e-01	ci right 1.093581e-01	k: 5331	n:50000
GPR98   50000 perm   27 sec   (1862 perm/sec)   p_kst 1.066200e-01   p_cons 3.640000e-03   p_joint 5.220000e-03

Joint ci ratio: 2.261320e-01	ci left: 4.419886e-03	ci right 5.562136e-03	k: 298	n:60000
Cons ci ratio: 2.596848e-01	ci left: 3.292315e-03	ci right 4.289962e-03	k: 226	n:60000
KS ci ratio: 4.616346e-02	ci left: 1.048013e-01	ci right 1.097701e-01	k: 6436	n:60000
GPR98   60000 perm   32 sec   (1864 perm/sec)   p_kst 1.072667e-01   p_cons 3.766667e-03   p_joint 4.966667e-03

Joint ci ratio: 2.455143e-01	ci left: 3.183273e-03	ci right 4.087213e-03	k: 253	n:70000
Cons ci ratio: 2.372210e-01	ci left: 3.424917e-03	ci right 4.359804e-03	k: 271	n:70000
KS ci ratio: 4.273220e-02	ci left: 1.050164e-01	ci right 1.096162e-01	k: 7511	n:70000
GPR98   70000 perm   38 sec   (1859 perm/sec)   p_kst 1.073000e-01   p_cons 3.871429e-03   p_joint 3.614286e-03

Joint ci ratio: 2.460568e-01	ci left: 2.773559e-03	ci right 3.563152e-03	k: 252	n:80000
Cons ci ratio: 2.207825e-01	ci left: 3.491732e-03	ci right 4.369846e-03	k: 313	n:80000
KS ci ratio: 3.987911e-02	ci left: 1.056094e-01	ci right 1.099191e-01	k: 8620	n:80000
GPR98   80000 perm   43 sec   (1855 perm/sec)   p_kst 1.077500e-01   p_cons 3.912500e-03   p_joint 3.150000e-03

Joint ci ratio: 1.985773e-01	ci left: 3.882998e-03	ci right 4.749430e-03	k: 387	n:90000
Cons ci ratio: 2.059005e-01	ci left: 3.598131e-03	ci right 4.434336e-03	k: 360	n:90000
KS ci ratio: 3.761715e-02	ci left: 1.056377e-01	ci right 1.096987e-01	k: 9689	n:90000
GPR98   90000 perm   49 sec   (1849 perm/sec)   p_kst 1.076556e-01   p_cons 4.000000e-03   p_joint 4.300000e-03

Joint ci ratio: 1.917927e-01	ci left: 3.760994e-03	ci right 4.568183e-03	k: 415	n:100000
Cons ci ratio: 1.970963e-01	ci left: 3.551665e-03	ci right 4.337538e-03	k: 393	n:100000
KS ci ratio: 3.573267e-02	ci left: 1.054973e-01	ci right 1.093455e-01	k: 10741	n:100000
GPR98   100000 perm   54 sec   (1841 perm/sec)   p_kst 1.074100e-01   p_cons 3.930000e-03   p_joint 4.150000e-03

Joint ci ratio: 1.854487e-01	ci left: 3.670258e-03	ci right 4.428985e-03	k: 444	n:110000
Cons ci ratio: 1.895556e-01	ci left: 3.505610e-03	ci right 4.248198e-03	k: 425	n:110000
KS ci ratio: 3.414460e-02	ci left: 1.051701e-01	ci right 1.088325e-01	k: 11769	n:110000
GPR98   110000 perm   60 sec   (1833 perm/sec)   p_kst 1.069909e-01   p_cons 3.863636e-03   p_joint 4.036364e-03

Joint ci ratio: 1.840330e-01	ci left: 3.419998e-03	ci right 4.120986e-03	k: 451	n:120000
Cons ci ratio: 1.810419e-01	ci left: 3.539305e-03	ci right 4.251666e-03	k: 466	n:120000
KS ci ratio: 3.266250e-02	ci left: 1.054136e-01	ci right 1.089221e-01	k: 12859	n:120000
GPR98   120000 perm   66 sec   (1822 perm/sec)   p_kst 1.071583e-01   p_cons 3.883333e-03   p_joint 3.758333e-03

Joint ci ratio: 1.852980e-01	ci left: 3.112854e-03	ci right 3.755764e-03	k: 445	n:130000
Cons ci ratio: 1.718908e-01	ci left: 3.642056e-03	ci right 4.334204e-03	k: 517	n:130000
KS ci ratio: 3.131403e-02	ci left: 1.058899e-01	ci right 1.092661e-01	k: 13984	n:130000
GPR98   130000 perm   72 sec   (1812 perm/sec)   p_kst 1.075692e-01   p_cons 3.976923e-03   p_joint 3.423077e-03

Joint ci ratio: 1.898584e-01	ci left: 2.747500e-03	ci right 3.330527e-03	k: 424	n:140000
Cons ci ratio: 1.650224e-01	ci left: 3.682955e-03	ci right 4.352131e-03	k: 561	n:140000
KS ci ratio: 3.018256e-02	ci left: 1.059033e-01	ci right 1.091558e-01	k: 15053	n:140000
GPR98   140000 perm   78 sec   (1800 perm/sec)   p_kst 1.075214e-01   p_cons 4.007143e-03   p_joint 3.028571e-03

Joint ci ratio: 1.938042e-01	ci left: 2.456406e-03	ci right 2.989771e-03	k: 407	n:150000
Cons ci ratio: 1.599803e-01	ci left: 3.667663e-03	ci right 4.311743e-03	k: 597	n:150000
KS ci ratio: 2.915132e-02	ci left: 1.060096e-01	ci right 1.091522e-01	k: 16136	n:150000
GPR98   150000 perm   84 sec   (1789 perm/sec)   p_kst 1.075733e-01   p_cons 3.980000e-03   p_joint 2.713333e-03

Joint ci ratio: 1.585433e-01	ci left: 3.504420e-03	ci right 4.113777e-03	k: 608	n:160000
Cons ci ratio: 1.550061e-01	ci left: 3.672579e-03	ci right 4.295606e-03	k: 636	n:160000
KS ci ratio: 2.821077e-02	ci left: 1.061602e-01	ci right 1.092041e-01	k: 17228	n:160000
GPR98   160000 perm   90 sec   (1778 perm/sec)   p_kst 1.076750e-01   p_cons 3.975000e-03   p_joint 3.800000e-03

Joint ci ratio: 1.640592e-01	ci left: 3.072422e-03	ci right 3.627082e-03	k: 568	n:170000
Cons ci ratio: 1.506927e-01	ci left: 3.665868e-03	ci right 4.268889e-03	k: 673	n:170000
KS ci ratio: 2.734990e-02	ci left: 1.063354e-01	ci right 1.092898e-01	k: 18327	n:170000
GPR98   170000 perm   96 sec   (1767 perm/sec)   p_kst 1.078059e-01   p_cons 3.958824e-03   p_joint 3.341176e-03

Joint ci ratio: 1.667414e-01	ci left: 2.805838e-03	ci right 3.321483e-03	k: 550	n:180000
Cons ci ratio: 1.465137e-01	ci left: 3.670820e-03	ci right 4.256445e-03	k: 712	n:180000
KS ci ratio: 2.660863e-02	ci left: 1.061665e-01	ci right 1.090350e-01	k: 19367	n:180000
GPR98   180000 perm   103 sec   (1755 perm/sec)   p_kst 1.075944e-01   p_cons 3.955556e-03   p_joint 3.055556e-03

Joint ci ratio: 1.637998e-01	ci left: 2.759067e-03	ci right 3.256289e-03	k: 570	n:190000
Cons ci ratio: 1.429507e-01	ci left: 3.660230e-03	ci right 4.228754e-03	k: 748	n:190000
KS ci ratio: 2.591031e-02	ci left: 1.061211e-01	ci right 1.089120e-01	k: 20427	n:190000
GPR98   190000 perm   109 sec   (1743 perm/sec)   p_kst 1.075105e-01   p_cons 3.936842e-03   p_joint 3.000000e-03

Joint ci ratio: 1.600605e-01	ci left: 2.750642e-03	ci right 3.233942e-03	k: 597	n:200000
Cons ci ratio: 1.389267e-01	ci left: 3.689466e-03	ci right 4.245063e-03	k: 792	n:200000
KS ci ratio: 2.525961e-02	ci left: 1.061159e-01	ci right 1.088355e-01	k: 21494	n:200000
GPR98   200000 perm   116 sec   (1731 perm/sec)   p_kst 1.074700e-01   p_cons 3.960000e-03   p_joint 2.985000e-03

Joint ci ratio: 1.578377e-01	ci left: 2.697385e-03	ci right 3.164122e-03	k: 614	n:210000
Cons ci ratio: 1.356317e-01	ci left: 3.693114e-03	ci right 4.235006e-03	k: 831	n:210000
KS ci ratio: 2.464887e-02	ci left: 1.061640e-01	ci right 1.088182e-01	k: 22572	n:210000
GPR98   210000 perm   122 sec   (1719 perm/sec)   p_kst 1.074857e-01   p_cons 3.957143e-03   p_joint 2.923810e-03

Joint ci ratio: 1.558284e-01	ci left: 2.644644e-03	ci right 3.095885e-03	k: 630	n:220000
Cons ci ratio: 1.320290e-01	ci left: 3.727340e-03	ci right 4.258587e-03	k: 877	n:220000
KS ci ratio: 2.410781e-02	ci left: 1.059916e-01	ci right 1.085824e-01	k: 23602	n:220000
GPR98   220000 perm   129 sec   (1707 perm/sec)   p_kst 1.072818e-01   p_cons 3.986364e-03   p_joint 2.863636e-03

Joint ci ratio: 1.394933e-01	ci left: 3.182994e-03	ci right 3.664437e-03	k: 786	n:230000
Cons ci ratio: 1.425235e-01	ci left: 3.044562e-03	ci right 3.515919e-03	k: 753	n:230000
KS ci ratio: 2.359176e-02	ci left: 1.059082e-01	ci right 1.084409e-01	k: 24649	n:230000
GPR98   230000 perm   136 sec   (1697 perm/sec)   p_kst 1.071696e-01   p_cons 3.273913e-03   p_joint 3.417391e-03

Joint ci ratio: 1.378438e-01	ci left: 3.126783e-03	ci right 3.593671e-03	k: 805	n:240000
Cons ci ratio: 1.398604e-01	ci left: 3.034269e-03	ci right 3.494523e-03	k: 782	n:240000
KS ci ratio: 2.307732e-02	ci left: 1.060810e-01	ci right 1.085618e-01	k: 25756	n:240000
GPR98   240000 perm   142 sec   (1686 perm/sec)   p_kst 1.073167e-01   p_cons 3.258333e-03   p_joint 3.354167e-03

Joint ci ratio: 1.370030e-01	ci left: 3.040327e-03	ci right 3.491310e-03	k: 815	n:250000
Cons ci ratio: 1.371718e-01	ci left: 3.032601e-03	ci right 3.483037e-03	k: 813	n:250000
KS ci ratio: 2.259985e-02	ci left: 1.062008e-01	ci right 1.086323e-01	k: 26853	n:250000
GPR98   250000 perm   149 sec   (1675 perm/sec)   p_kst 1.074120e-01   p_cons 3.252000e-03   p_joint 3.260000e-03

Joint ci ratio: 1.243481e-01	ci left: 3.570852e-03	ci right 4.048006e-03	k: 989	n:260000
Cons ci ratio: 1.343140e-01	ci left: 3.046008e-03	ci right 3.488257e-03	k: 848	n:260000
KS ci ratio: 2.218954e-02	ci left: 1.059789e-01	ci right 1.083607e-01	k: 27863	n:260000
GPR98   260000 perm   156 sec   (1664 perm/sec)   p_kst 1.071654e-01   p_cons 3.261538e-03   p_joint 3.803846e-03

Joint ci ratio: 1.177365e-01	ci left: 3.848076e-03	ci right 4.333034e-03	k: 1103	n:270000
Cons ci ratio: 1.319274e-01	ci left: 3.044183e-03	ci right 3.477699e-03	k: 879	n:270000
KS ci ratio: 2.178136e-02	ci left: 1.059433e-01	ci right 1.082800e-01	k: 28919	n:270000
GPR98   270000 perm   163 sec   (1653 perm/sec)   p_kst 1.071074e-01   p_cons 3.255556e-03   p_joint 4.085185e-03

Joint ci ratio: 1.031791e-01	ci left: 4.863863e-03	ci right 5.396460e-03	k: 1435	n:280000
Cons ci ratio: 1.291668e-01	ci left: 3.066747e-03	ci right 3.493636e-03	k: 917	n:280000
KS ci ratio: 2.137934e-02	ci left: 1.060493e-01	ci right 1.083446e-01	k: 30014	n:280000
GPR98   280000 perm   170 sec   (1645 perm/sec)   p_kst 1.071929e-01   p_cons 3.275000e-03   p_joint 5.125000e-03

Joint ci ratio: 1.043633e-01	ci left: 4.588628e-03	ci right 5.097207e-03	k: 1403	n:290000
Cons ci ratio: 1.273771e-01	ci left: 3.047774e-03	ci right 3.465699e-03	k: 943	n:290000
KS ci ratio: 2.102188e-02	ci left: 1.059390e-01	ci right 1.081930e-01	k: 31048	n:290000
GPR98   290000 perm   177 sec   (1637 perm/sec)   p_kst 1.070621e-01   p_cons 3.251724e-03   p_joint 4.837931e-03

Joint ci ratio: 1.027306e-01	ci left: 4.581788e-03	ci right 5.081184e-03	k: 1448	n:300000
Cons ci ratio: 1.257899e-01	ci left: 3.023645e-03	ci right 3.432711e-03	k: 967	n:300000
KS ci ratio: 2.067130e-02	ci left: 1.059325e-01	ci right 1.081484e-01	k: 32111	n:300000
GPR98   300000 perm   184 sec   (1628 perm/sec)   p_kst 1.070367e-01   p_cons 3.223333e-03   p_joint 4.826667e-03

Joint ci ratio: 1.013769e-01	ci left: 4.556581e-03	ci right 5.046295e-03	k: 1487	n:310000
Cons ci ratio: 1.241352e-01	ci left: 3.007356e-03	ci right 3.408472e-03	k: 993	n:310000
KS ci ratio: 2.032878e-02	ci left: 1.060103e-01	ci right 1.081906e-01	k: 33200	n:310000
GPR98   310000 perm   191 sec   (1619 perm/sec)   p_kst 1.070968e-01   p_cons 3.203226e-03   p_joint 4.796774e-03

Joint ci ratio: 1.034296e-01	ci left: 4.237543e-03	ci right 4.702751e-03	k: 1429	n:320000
Cons ci ratio: 1.220052e-01	ci left: 3.019385e-03	ci right 3.414696e-03	k: 1028	n:320000
KS ci ratio: 2.001517e-02	ci left: 1.059652e-01	ci right 1.081107e-01	k: 34251	n:320000
GPR98   320000 perm   199 sec   (1610 perm/sec)   p_kst 1.070344e-01   p_cons 3.212500e-03   p_joint 4.465625e-03

Joint ci ratio: 1.017357e-01	ci left: 4.250857e-03	ci right 4.709427e-03	k: 1477	n:330000
Cons ci ratio: 1.203792e-01	ci left: 3.010164e-03	ci right 3.398641e-03	k: 1056	n:330000
KS ci ratio: 1.971469e-02	ci left: 1.059322e-01	ci right 1.080444e-01	k: 35305	n:330000
GPR98   330000 perm   206 sec   (1600 perm/sec)   p_kst 1.069848e-01   p_cons 3.200000e-03   p_joint 4.475758e-03

Joint ci ratio: 1.013643e-01	ci left: 4.157353e-03	ci right 4.604100e-03	k: 1488	n:340000
Cons ci ratio: 1.184882e-01	ci left: 3.018643e-03	ci right 3.401666e-03	k: 1090	n:340000
KS ci ratio: 1.942885e-02	ci left: 1.058867e-01	ci right 1.079671e-01	k: 36354	n:340000
GPR98   340000 perm   214 sec   (1588 perm/sec)   p_kst 1.069235e-01   p_cons 3.205882e-03   p_joint 4.376471e-03

Joint ci ratio: 1.023064e-01	ci left: 3.963373e-03	ci right 4.393471e-03	k: 1461	n:350000
Cons ci ratio: 1.171547e-01	ci left: 3.001718e-03	ci right 3.378011e-03	k: 1115	n:350000
KS ci ratio: 1.915882e-02	ci left: 1.058070e-01	ci right 1.078566e-01	k: 37390	n:350000
GPR98   350000 perm   222 sec   (1578 perm/sec)   p_kst 1.068286e-01   p_cons 3.185714e-03   p_joint 4.174286e-03

Joint ci ratio: 1.042266e-01	ci left: 3.709834e-03	ci right 4.120437e-03	k: 1408	n:360000
Cons ci ratio: 1.160184e-01	ci left: 2.977664e-03	ci right 3.347072e-03	k: 1137	n:360000
KS ci ratio: 1.889369e-02	ci left: 1.057929e-01	ci right 1.078135e-01	k: 38448	n:360000
GPR98   360000 perm   232 sec   (1554 perm/sec)   p_kst 1.068000e-01   p_cons 3.158333e-03   p_joint 3.911111e-03

Joint ci ratio: 9.582262e-02	ci left: 4.286875e-03	ci right 4.720942e-03	k: 1665	n:370000
Cons ci ratio: 1.148152e-01	ci left: 2.960177e-03	ci right 3.323349e-03	k: 1161	n:370000
KS ci ratio: 1.864614e-02	ci left: 1.057096e-01	ci right 1.077019e-01	k: 39480	n:370000
GPR98   370000 perm   239 sec   (1545 perm/sec)   p_kst 1.067027e-01   p_cons 3.137838e-03   p_joint 4.500000e-03

Joint ci ratio: 9.419535e-02	ci left: 4.323071e-03	ci right 4.752959e-03	k: 1723	n:380000
Cons ci ratio: 1.130763e-01	ci left: 2.974315e-03	ci right 3.333327e-03	k: 1197	n:380000
KS ci ratio: 1.837990e-02	ci left: 1.059219e-01	ci right 1.078894e-01	k: 40623	n:380000
GPR98   380000 perm   248 sec   (1535 perm/sec)   p_kst 1.069026e-01   p_cons 3.150000e-03   p_joint 4.534211e-03

Joint ci ratio: 9.365674e-02	ci left: 4.262294e-03	ci right 4.683582e-03	k: 1743	n:390000
Cons ci ratio: 1.120996e-01	ci left: 2.950379e-03	ci right 3.303222e-03	k: 1218	n:390000
KS ci ratio: 1.815859e-02	ci left: 1.057685e-01	ci right 1.077092e-01	k: 41627	n:390000
GPR98   390000 perm   256 sec   (1525 perm/sec)   p_kst 1.067359e-01   p_cons 3.123077e-03   p_joint 4.469231e-03

Joint ci ratio: 9.358120e-02	ci left: 4.163051e-03	ci right 4.574180e-03	k: 1746	n:400000
Cons ci ratio: 1.107898e-01	ci left: 2.947098e-03	ci right 3.295161e-03	k: 1247	n:400000
KS ci ratio: 1.793426e-02	ci left: 1.057374e-01	ci right 1.076533e-01	k: 42677	n:400000
GPR98   400000 perm   264 sec   (1516 perm/sec)   p_kst 1.066925e-01   p_cons 3.117500e-03   p_joint 4.365000e-03

Joint ci ratio: 9.396508e-02	ci left: 4.028155e-03	ci right 4.427682e-03	k: 1732	n:410000
Cons ci ratio: 1.093532e-01	ci left: 2.953490e-03	ci right 3.297494e-03	k: 1280	n:410000
KS ci ratio: 1.771668e-02	ci left: 1.057225e-01	ci right 1.076147e-01	k: 43733	n:410000
GPR98   410000 perm   272 sec   (1509 perm/sec)   p_kst 1.066659e-01   p_cons 3.121951e-03   p_joint 4.224390e-03

Joint ci ratio: 9.351039e-02	ci left: 3.971768e-03	ci right 4.363693e-03	k: 1749	n:420000
Cons ci ratio: 1.081777e-01	ci left: 2.948021e-03	ci right 3.287462e-03	k: 1308	n:420000
KS ci ratio: 1.750071e-02	ci left: 1.057749e-01	ci right 1.076448e-01	k: 44817	n:420000
GPR98   420000 perm   280 sec   (1498 perm/sec)   p_kst 1.067071e-01   p_cons 3.114286e-03   p_joint 4.164286e-03

Joint ci ratio: 9.474595e-02	ci left: 3.777196e-03	ci right 4.155118e-03	k: 1704	n:430000
Cons ci ratio: 1.066798e-01	ci left: 2.963198e-03	ci right 3.299366e-03	k: 1345	n:430000
KS ci ratio: 1.730216e-02	ci left: 1.057185e-01	ci right 1.075659e-01	k: 45855	n:430000
GPR98   430000 perm   289 sec   (1490 perm/sec)   p_kst 1.066395e-01   p_cons 3.127907e-03   p_joint 3.962791e-03

Joint ci ratio: 9.531307e-02	ci left: 3.646964e-03	ci right 4.014162e-03	k: 1684	n:440000
Cons ci ratio: 1.055491e-01	ci left: 2.960012e-03	ci right 3.292039e-03	k: 1374	n:440000
KS ci ratio: 1.710022e-02	ci left: 1.057756e-01	ci right 1.076023e-01	k: 46942	n:440000
GPR98   440000 perm   297 sec   (1482 perm/sec)   p_kst 1.066864e-01   p_cons 3.122727e-03   p_joint 3.827273e-03

Joint ci ratio: 9.641455e-02	ci left: 3.483487e-03	ci right 3.838507e-03	k: 1646	n:450000
Cons ci ratio: 1.044909e-01	ci left: 2.954822e-03	ci right 3.282739e-03	k: 1402	n:450000
KS ci ratio: 1.690637e-02	ci left: 1.058171e-01	ci right 1.076235e-01	k: 48023	n:450000
GPR98   450000 perm   305 sec   (1474 perm/sec)   p_kst 1.067178e-01   p_cons 3.115556e-03   p_joint 3.657778e-03

Joint ci ratio: 9.537787e-02	ci left: 3.484143e-03	ci right 3.835198e-03	k: 1682	n:460000
Cons ci ratio: 1.033192e-01	ci left: 2.958344e-03	ci right 3.282747e-03	k: 1434	n:460000
KS ci ratio: 1.672125e-02	ci left: 1.058309e-01	ci right 1.076176e-01	k: 49092	n:460000
GPR98   460000 perm   314 sec   (1466 perm/sec)   p_kst 1.067217e-01   p_cons 3.117391e-03   p_joint 3.656522e-03

Joint ci ratio: 9.692536e-02	ci left: 3.299942e-03	ci right 3.638139e-03	k: 1629	n:470000
Cons ci ratio: 1.020466e-01	ci left: 2.970030e-03	ci right 3.291462e-03	k: 1470	n:470000
KS ci ratio: 1.654818e-02	ci left: 1.057742e-01	ci right 1.075413e-01	k: 50128	n:470000
GPR98   470000 perm   322 sec   (1458 perm/sec)   p_kst 1.066553e-01   p_cons 3.127660e-03   p_joint 3.465957e-03

Joint ci ratio: 9.713839e-02	ci left: 3.216958e-03	ci right 3.547415e-03	k: 1622	n:480000
Cons ci ratio: 1.006191e-01	ci left: 2.993439e-03	ci right 3.312605e-03	k: 1512	n:480000
KS ci ratio: 1.636552e-02	ci left: 1.058923e-01	ci right 1.076416e-01	k: 51247	n:480000
GPR98   480000 perm   331 sec   (1450 perm/sec)   p_kst 1.067646e-01   p_cons 3.150000e-03   p_joint 3.379167e-03

Joint ci ratio: 9.768675e-02	ci left: 3.115458e-03	ci right 3.437399e-03	k: 1604	n:490000
Cons ci ratio: 9.947480e-02	ci left: 3.001990e-03	ci right 3.318215e-03	k: 1547	n:490000
KS ci ratio: 1.619448e-02	ci left: 1.059386e-01	ci right 1.076702e-01	k: 52333	n:490000
GPR98   490000 perm   340 sec   (1442 perm/sec)   p_kst 1.068020e-01   p_cons 3.157143e-03   p_joint 3.273469e-03

Outputting figure to mutsig2_images.part000000000074/GPR98.35_19281_490000_0.1068_0.0031571_0.0032735.png
                gene_name: GPR98
               theta_stop: 0.099 
                    nperm: 490000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.0032 
      ci_cons_bounds_left: 0.0030 
     ci_cons_bounds_right: 0.0033 
                  p_joint: 0.0033 
     ci_joint_bounds_left: 0.0031 
    ci_joint_bounds_right: 0.0034 

Current progress: 2 percent done.
GRIN2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.584068e-02	ci left: 2.530063e-01	ci right 2.703328e-01	k: 2616	n:10000
Cons ci ratio: 5.171582e-02	ci left: 3.553558e-01	ci right 3.743230e-01	k: 3648	n:10000
KS ci ratio: 6.533341e-02	ci left: 2.559738e-01	ci right 2.733635e-01	k: 2646	n:10000
GRIN2A   10000 perm   2 sec   (4509 perm/sec)   p_kst 2.646000e-01   p_cons 3.648000e-01   p_joint 2.616000e-01

Outputting figure to mutsig2_images.part000000000074/GRIN2A.16_4443_10000_0.2646_0.3648_0.2616.png
                gene_name: GRIN2A
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 4 percent done.
GRID2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.643068e-02	ci left: 5.266669e-01	ci right 5.463118e-01	k: 5365	n:10000
Cons ci ratio: 3.497592e-02	ci left: 5.468981e-01	ci right 5.664689e-01	k: 5567	n:10000
KS ci ratio: 5.328022e-02	ci left: 3.417393e-01	ci right 3.605475e-01	k: 3511	n:10000
GRID2   10000 perm   2 sec   (4874 perm/sec)   p_kst 3.511000e-01   p_cons 5.567000e-01   p_joint 5.365000e-01

Outputting figure to mutsig2_images.part000000000074/GRID2.15_3087_10000_0.3511_0.5567_0.5365.png
                gene_name: GRID2
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 6 percent done.
GREB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.488668e-02	ci left: 8.673368e-01	ci right 8.804445e-01	k: 8740	n:10000
Cons ci ratio: 3.385608e-02	ci left: 5.629343e-01	ci right 5.824233e-01	k: 5727	n:10000
KS ci ratio: 2.967861e-02	ci left: 6.260790e-01	ci right 6.450419e-01	k: 6356	n:10000
GREB1   10000 perm   2 sec   (4078 perm/sec)   p_kst 6.356000e-01   p_cons 5.727000e-01   p_joint 8.740000e-01

Outputting figure to mutsig2_images.part000000000074/GREB1.13_6086_10000_0.6356_0.5727_0.874.png
                gene_name: GREB1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 8 percent done.
GRID1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.837354e-02	ci left: 3.016359e-01	ci right 3.198745e-01	k: 3107	n:10000
Cons ci ratio: 6.945106e-02	ci left: 2.331377e-01	ci right 2.500131e-01	k: 2415	n:10000
KS ci ratio: 5.489697e-02	ci left: 3.283299e-01	ci right 3.469648e-01	k: 3376	n:10000
GRID1   10000 perm   2 sec   (5122 perm/sec)   p_kst 3.376000e-01   p_cons 2.415000e-01   p_joint 3.107000e-01

Outputting figure to mutsig2_images.part000000000074/GRID1.13_3094_10000_0.3376_0.2415_0.3107.png
                gene_name: GRID1
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 9 percent done.
GRIA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.104511e-02	ci left: 6.048784e-01	ci right 6.240549e-01	k: 6145	n:10000
Cons ci ratio: 2.523414e-02	ci left: 6.979701e-01	ci right 7.159092e-01	k: 7070	n:10000
KS ci ratio: 4.124628e-02	ci left: 4.646716e-01	ci right 4.843433e-01	k: 4745	n:10000
GRIA3   10000 perm   2 sec   (4728 perm/sec)   p_kst 4.745000e-01   p_cons 7.070000e-01   p_joint 6.145000e-01

Outputting figure to mutsig2_images.part000000000074/GRIA3.11_2864_10000_0.4745_0.707_0.6145.png
                gene_name: GRIA3
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 11 percent done.
GRIA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.689535e-02	ci left: 6.706551e-01	ci right 6.890400e-01	k: 6799	n:10000
Cons ci ratio: 1.842942e-02	ci left: 8.113112e-01	ci right 8.265025e-01	k: 8190	n:10000
KS ci ratio: 3.741616e-02	ci left: 5.133552e-01	ci right 5.330313e-01	k: 5232	n:10000
GRIA4   10000 perm   2 sec   (4520 perm/sec)   p_kst 5.232000e-01   p_cons 8.190000e-01   p_joint 6.799000e-01

Outputting figure to mutsig2_images.part000000000074/GRIA4.10_3040_10000_0.5232_0.819_0.6799.png
                gene_name: GRIA4
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 13 percent done.
GRIK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.561827e-02	ci left: 6.916168e-01	ci right 7.096662e-01	k: 7007	n:10000
Cons ci ratio: 5.556630e-02	ci left: 3.229685e-01	ci right 3.415293e-01	k: 3322	n:10000
KS ci ratio: 2.254126e-02	ci left: 7.429077e-01	ci right 7.599456e-01	k: 7515	n:10000
GRIK3   10000 perm   2 sec   (5035 perm/sec)   p_kst 7.515000e-01   p_cons 3.322000e-01   p_joint 7.007000e-01

Outputting figure to mutsig2_images.part000000000074/GRIK3.10_2824_10000_0.7515_0.3322_0.7007.png
                gene_name: GRIK3
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 15 percent done.
GRIA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.612419e-02	ci left: 5.308720e-01	ci right 5.505042e-01	k: 5407	n:10000
KS ci ratio: 1.681007e-02	ci left: 8.374510e-01	ci right 8.517477e-01	k: 8447	n:10000
GRIA1   10000 perm   2 sec   (4618 perm/sec)   p_kst 8.447000e-01   p_cons 5.407000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000074/GRIA1.9_2904_10000_0.8447_0.5407_1.png
                gene_name: GRIA1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 17 percent done.
GRIK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.384225e-02	ci left: 5.631348e-01	ci right 5.826227e-01	k: 5729	n:10000
KS ci ratio: 2.015033e-02	ci left: 7.828967e-01	ci right 7.989335e-01	k: 7910	n:10000
GRIK2   10000 perm   2 sec   (4691 perm/sec)   p_kst 7.910000e-01   p_cons 5.729000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000074/GRIK2.9_2964_10000_0.791_0.5729_1.png
                gene_name: GRIK2
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 19 percent done.
GPRASP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.144526e-02	ci left: 4.622748e-01	ci right 4.819415e-01	k: 4721	n:10000
Cons ci ratio: 8.075213e-02	ci left: 1.829427e-01	ci right 1.984379e-01	k: 1906	n:10000
KS ci ratio: 3.247861e-02	ci left: 5.831949e-01	ci right 6.025510e-01	k: 5929	n:10000
GPRASP1   10000 perm   2 sec   (4895 perm/sec)   p_kst 5.929000e-01   p_cons 1.906000e-01   p_joint 4.721000e-01

Outputting figure to mutsig2_images.part000000000074/GPRASP1.7_4192_10000_0.5929_0.1906_0.4721.png
                gene_name: GPRASP1
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 21 percent done.
GRIA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.633841e-02	ci left: 2.501382e-01	ci right 2.674026e-01	k: 2587	n:10000
Cons ci ratio: 3.103201e-02	ci left: 6.050792e-01	ci right 6.242539e-01	k: 6147	n:10000
KS ci ratio: 9.596083e-02	ci left: 1.360954e-01	ci right 1.499133e-01	k: 1429	n:10000
GRIA2   10000 perm   2 sec   (4811 perm/sec)   p_kst 1.429000e-01   p_cons 6.147000e-01   p_joint 2.587000e-01

Outputting figure to mutsig2_images.part000000000074/GRIA2.7_2831_10000_0.1429_0.6147_0.2587.png
                gene_name: GRIA2
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 23 percent done.
GPRIN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.339733e-02	ci left: 3.407457e-01	ci right 3.595416e-01	k: 3501	n:10000
Cons ci ratio: 3.185010e-02	ci left: 5.926288e-01	ci right 6.119116e-01	k: 6023	n:10000
KS ci ratio: 6.445550e-02	ci left: 2.612176e-01	ci right 2.787166e-01	k: 2699	n:10000
GPRIN3   10000 perm   2 sec   (5765 perm/sec)   p_kst 2.699000e-01   p_cons 6.023000e-01   p_joint 3.501000e-01

Outputting figure to mutsig2_images.part000000000074/GPRIN3.6_2335_10000_0.2699_0.6023_0.3501.png
                gene_name: GPRIN3
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 25 percent done.
GRAMD1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.806431e-02	ci left: 6.517269e-01	ci right 6.703792e-01	k: 6611	n:10000
Cons ci ratio: 1.663683e-02	ci left: 8.402009e-01	ci right 8.543961e-01	k: 8474	n:10000
KS ci ratio: 4.660958e-02	ci left: 4.045217e-01	ci right 4.239283e-01	k: 4142	n:10000
GRAMD1B   10000 perm   2 sec   (5231 perm/sec)   p_kst 4.142000e-01   p_cons 8.474000e-01   p_joint 6.611000e-01

Outputting figure to mutsig2_images.part000000000074/GRAMD1B.6_2297_10000_0.4142_0.8474_0.6611.png
                gene_name: GRAMD1B
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 26 percent done.
GPR50
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.555112e-02	ci left: 6.927260e-01	ci right 7.107564e-01	k: 7018	n:10000
KS ci ratio: 1.387591e-02	ci left: 8.823723e-01	ci right 8.948003e-01	k: 8887	n:10000
GPR50   10000 perm   2 sec   (5907 perm/sec)   p_kst 8.887000e-01   p_cons 7.018000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000074/GPR50.5_1862_10000_0.8887_0.7018_1.png
                gene_name: GPR50
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 28 percent done.
GPR64
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.623245e-01	ci left: 5.061180e-02	ci right 5.964956e-02	k: 550	n:10000
Cons ci ratio: 2.111979e-01	ci left: 2.977507e-02	ci right 3.690017e-02	k: 332	n:10000
KS ci ratio: 1.576830e-01	ci left: 5.359424e-02	ci right 6.286520e-02	k: 581	n:10000
GPR64   10000 perm   2 sec   (5139 perm/sec)   p_kst 5.810000e-02   p_cons 3.320000e-02   p_joint 5.500000e-02

Joint ci ratio: 1.533170e-01	ci left: 2.921889e-02	ci right 3.411851e-02	k: 632	n:20000
Cons ci ratio: 1.528191e-01	ci left: 2.941145e-02	ci right 3.432589e-02	k: 636	n:20000
KS ci ratio: 1.112477e-01	ci left: 5.518946e-02	ci right 6.173965e-02	k: 1168	n:20000
GPR64   20000 perm   4 sec   (4653 perm/sec)   p_kst 5.840000e-02   p_cons 3.180000e-02   p_joint 3.160000e-02

Joint ci ratio: 9.366089e-02	ci left: 5.257711e-02	ci right 5.777613e-02	k: 1654	n:30000
Cons ci ratio: 1.281768e-01	ci left: 2.829237e-02	ci right 3.219931e-02	k: 906	n:30000
KS ci ratio: 9.079278e-02	ci left: 5.583789e-02	ci right 6.118135e-02	k: 1754	n:30000
GPR64   30000 perm   7 sec   (4464 perm/sec)   p_kst 5.846667e-02   p_cons 3.020000e-02   p_joint 5.513333e-02

Joint ci ratio: 1.082363e-01	ci left: 3.002898e-02	ci right 3.348944e-02	k: 1269	n:40000
Cons ci ratio: 1.109732e-01	ci left: 2.856889e-02	ci right 3.194977e-02	k: 1209	n:40000
KS ci ratio: 8.077777e-02	ci left: 5.334969e-02	ci right 5.786509e-02	k: 2223	n:40000
GPR64   40000 perm   9 sec   (4341 perm/sec)   p_kst 5.557500e-02   p_cons 3.022500e-02   p_joint 3.172500e-02

Joint ci ratio: 8.294471e-02	ci left: 4.098365e-02	ci right 4.454969e-02	k: 2137	n:50000
Cons ci ratio: 9.810975e-02	ci left: 2.942001e-02	ci right 3.247477e-02	k: 1546	n:50000
KS ci ratio: 7.226376e-02	ci left: 5.356800e-02	ci right 5.760380e-02	k: 2778	n:50000
GPR64   50000 perm   12 sec   (4242 perm/sec)   p_kst 5.556000e-02   p_cons 3.092000e-02   p_joint 4.274000e-02

Outputting figure to mutsig2_images.part000000000074/GPR64.5_3162_50000_0.05556_0.03092_0.04274.png
                gene_name: GPR64
               theta_stop: 0.098 
                    nperm: 50000 
                     p_ks: 0.056 
        ci_ks_bounds_left: 0.054 
       ci_ks_bounds_right: 0.058 
                   p_cons: 0.031 
      ci_cons_bounds_left: 0.029 
     ci_cons_bounds_right: 0.032 
                  p_joint: 0.043 
     ci_joint_bounds_left: 0.041 
    ci_joint_bounds_right: 0.045 

Current progress: 30 percent done.
GRIK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.631022e-02	ci left: 6.802263e-01	ci right 6.984633e-01	k: 6894	n:10000
Cons ci ratio: 1.598226e-02	ci left: 8.504946e-01	ci right 8.642965e-01	k: 8575	n:10000
KS ci ratio: 3.644533e-02	ci left: 5.264667e-01	ci right 5.461122e-01	k: 5363	n:10000
GRIK1   10000 perm   2 sec   (5347 perm/sec)   p_kst 5.363000e-01   p_cons 8.575000e-01   p_joint 6.894000e-01

Outputting figure to mutsig2_images.part000000000074/GRIK1.5_2985_10000_0.5363_0.8575_0.6894.png
                gene_name: GRIK1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 32 percent done.
GPR45
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.523504e-02	ci left: 4.190720e-01	ci right 4.385695e-01	k: 4288	n:10000
Cons ci ratio: 8.075213e-02	ci left: 1.829427e-01	ci right 1.984379e-01	k: 1906	n:10000
KS ci ratio: 2.837802e-02	ci left: 6.466956e-01	ci right 6.654134e-01	k: 6561	n:10000
GPR45   10000 perm   2 sec   (6379 perm/sec)   p_kst 6.561000e-01   p_cons 1.906000e-01   p_joint 4.288000e-01

Outputting figure to mutsig2_images.part000000000074/GPR45.4_1123_10000_0.6561_0.1906_0.4288.png
                gene_name: GPR45
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 34 percent done.
GPR63
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.965007e-02	ci left: 1.272828e-01	ci right 1.407312e-01	k: 1339	n:10000
Cons ci ratio: 1.940616e-01	ci left: 3.538572e-02	ci right 4.308567e-02	k: 391	n:10000
KS ci ratio: 1.181872e-01	ci left: 9.321372e-02	ci right 1.050210e-01	k: 990	n:10000
GPR63   10000 perm   2 sec   (6175 perm/sec)   p_kst 9.900000e-02   p_cons 3.910000e-02   p_joint 1.339000e-01

Joint ci ratio: 4.815728e-02	ci left: 2.428203e-01	ci right 2.548528e-01	k: 4976	n:20000
Cons ci ratio: 1.331252e-01	ci left: 3.877774e-02	ci right 4.435654e-02	k: 830	n:20000
KS ci ratio: 8.129255e-02	ci left: 9.990035e-02	ci right 1.084151e-01	k: 2082	n:20000
GPR63   20000 perm   4 sec   (5492 perm/sec)   p_kst 1.041000e-01   p_cons 4.150000e-02   p_joint 2.488000e-01

Joint ci ratio: 5.392402e-02	ci left: 1.457131e-01	ci right 1.538215e-01	k: 4492	n:30000
Cons ci ratio: 1.067247e-01	ci left: 4.073218e-02	ci right 4.535684e-02	k: 1290	n:30000
KS ci ratio: 6.563347e-02	ci left: 1.027681e-01	ci right 1.097750e-01	k: 3187	n:30000
GPR63   30000 perm   6 sec   (5224 perm/sec)   p_kst 1.062333e-01   p_cons 4.300000e-02   p_joint 1.497333e-01

Joint ci ratio: 4.816847e-02	ci left: 1.386177e-01	ci right 1.454844e-01	k: 5681	n:40000
Cons ci ratio: 9.404630e-02	ci left: 3.966408e-02	ci right 4.360282e-02	k: 1664	n:40000
KS ci ratio: 5.778545e-02	ci left: 1.001857e-01	ci right 1.061720e-01	k: 4126	n:40000
GPR63   40000 perm   8 sec   (5058 perm/sec)   p_kst 1.031500e-01   p_cons 4.160000e-02   p_joint 1.420250e-01

Outputting figure to mutsig2_images.part000000000074/GPR63.4_1264_40000_0.10315_0.0416_0.14203.png
                gene_name: GPR63
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.042 
      ci_cons_bounds_left: 0.040 
     ci_cons_bounds_right: 0.044 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 36 percent done.
GPR87
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.172831e-02	ci left: 9.123470e-01	ci right 9.232082e-01	k: 9179	n:10000
Cons ci ratio: 1.651450e-02	ci left: 8.421365e-01	ci right 8.562594e-01	k: 8493	n:10000
KS ci ratio: 3.160472e-02	ci left: 5.963432e-01	ci right 6.155950e-01	k: 6060	n:10000
GPR87   10000 perm   2 sec   (5761 perm/sec)   p_kst 6.060000e-01   p_cons 8.493000e-01   p_joint 9.179000e-01

Outputting figure to mutsig2_images.part000000000074/GPR87.4_1085_10000_0.606_0.8493_0.9179.png
                gene_name: GPR87
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 38 percent done.
GPRC5C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.239631e-01	ci left: 8.523830e-02	ci right 9.660131e-02	k: 908	n:10000
Cons ci ratio: 3.996985e-02	ci left: 4.803561e-01	ci right 5.000496e-01	k: 4902	n:10000
KS ci ratio: 3.083799e-01	ci left: 1.344771e-02	ci right 1.844006e-02	k: 158	n:10000
GPRC5C   10000 perm   2 sec   (5774 perm/sec)   p_kst 1.580000e-02   p_cons 4.902000e-01   p_joint 9.080000e-02

Joint ci ratio: 1.180498e-01	ci left: 4.915761e-02	ci right 5.537338e-02	k: 1044	n:20000
Cons ci ratio: 2.950925e-02	ci left: 4.617640e-01	ci right 4.756451e-01	k: 9374	n:20000
KS ci ratio: 2.194697e-01	ci left: 1.397554e-02	ci right 1.746732e-02	k: 313	n:20000
GPRC5C   20000 perm   4 sec   (5185 perm/sec)   p_kst 1.565000e-02   p_cons 4.687000e-01   p_joint 5.220000e-02

Joint ci ratio: 1.081327e-01	ci left: 3.969301e-02	ci right 4.426290e-02	k: 1258	n:30000
Cons ci ratio: 2.457265e-02	ci left: 4.532821e-01	ci right 4.645926e-01	k: 13768	n:30000
KS ci ratio: 1.825744e-01	ci left: 1.375047e-02	ci right 1.654458e-02	k: 453	n:30000
GPRC5C   30000 perm   6 sec   (4964 perm/sec)   p_kst 1.510000e-02   p_cons 4.589333e-01   p_joint 4.193333e-02

Joint ci ratio: 9.536882e-02	ci left: 3.858909e-02	ci right 4.247797e-02	k: 1620	n:40000
Cons ci ratio: 2.075635e-02	ci left: 4.664479e-01	ci right 4.762563e-01	k: 18854	n:40000
KS ci ratio: 1.558218e-01	ci left: 1.436027e-02	ci right 1.681079e-02	k: 622	n:40000
GPRC5C   40000 perm   8 sec   (4808 perm/sec)   p_kst 1.555000e-02   p_cons 4.713500e-01   p_joint 4.050000e-02

Joint ci ratio: 8.296498e-02	ci left: 4.096404e-02	ci right 4.452929e-02	k: 2136	n:50000
Cons ci ratio: 1.851498e-02	ci left: 4.683156e-01	ci right 4.770876e-01	k: 23635	n:50000
KS ci ratio: 1.444234e-01	ci left: 1.347047e-02	ci right 1.558645e-02	k: 725	n:50000
GPRC5C   50000 perm   11 sec   (4688 perm/sec)   p_kst 1.450000e-02   p_cons 4.727000e-01   p_joint 4.272000e-02

Joint ci ratio: 7.681285e-02	ci left: 3.999982e-02	ci right 4.321137e-02	k: 2495	n:60000
Cons ci ratio: 1.690527e-02	ci left: 4.685983e-01	ci right 4.766043e-01	k: 28356	n:60000
KS ci ratio: 1.325521e-01	ci left: 1.341360e-02	ci right 1.533379e-02	k: 861	n:60000
GPRC5C   60000 perm   13 sec   (4581 perm/sec)   p_kst 1.435000e-02   p_cons 4.726000e-01   p_joint 4.158333e-02

Joint ci ratio: 6.419672e-02	ci left: 4.894563e-02	ci right 5.220604e-02	k: 3539	n:70000
Cons ci ratio: 1.565937e-02	ci left: 4.686386e-01	ci right 4.760494e-01	k: 33064	n:70000
KS ci ratio: 1.237642e-01	ci left: 1.325347e-02	ci right 1.501572e-02	k: 988	n:70000
GPRC5C   70000 perm   16 sec   (4490 perm/sec)   p_kst 1.411429e-02   p_cons 4.723429e-01   p_joint 5.055714e-02

Joint ci ratio: 6.445777e-02	ci left: 4.276140e-02	ci right 4.562178e-02	k: 3534	n:80000
Cons ci ratio: 1.467762e-02	ci left: 4.678733e-01	ci right 4.748038e-01	k: 37707	n:80000
KS ci ratio: 1.158898e-01	ci left: 1.328225e-02	ci right 1.492826e-02	k: 1127	n:80000
GPRC5C   80000 perm   18 sec   (4395 perm/sec)   p_kst 1.408750e-02   p_cons 4.713375e-01   p_joint 4.417500e-02

Joint ci ratio: 6.166806e-02	ci left: 4.164009e-02	ci right 4.430058e-02	k: 3866	n:90000
Cons ci ratio: 1.385038e-02	ci left: 4.676344e-01	ci right 4.741675e-01	k: 42381	n:90000
KS ci ratio: 1.092621e-01	ci left: 1.332904e-02	ci right 1.488029e-02	k: 1268	n:90000
GPRC5C   90000 perm   21 sec   (4314 perm/sec)   p_kst 1.408889e-02   p_cons 4.709000e-01   p_joint 4.295556e-02

Joint ci ratio: 5.771950e-02	ci left: 4.281597e-02	ci right 4.537056e-02	k: 4408	n:100000
Cons ci ratio: 1.311462e-02	ci left: 4.687518e-01	ci right 4.749498e-01	k: 47185	n:100000
KS ci ratio: 1.035435e-01	ci left: 1.339785e-02	ci right 1.487053e-02	k: 1412	n:100000
GPRC5C   100000 perm   24 sec   (4234 perm/sec)   p_kst 1.412000e-02   p_cons 4.718500e-01   p_joint 4.408000e-02

Joint ci ratio: 6.975389e-02	ci left: 2.693470e-02	ci right 2.889030e-02	k: 3069	n:110000
Cons ci ratio: 1.269698e-02	ci left: 4.612856e-01	ci right 4.671890e-01	k: 51066	n:110000
KS ci ratio: 9.915607e-02	ci left: 1.331398e-02	ci right 1.471182e-02	k: 1540	n:110000
GPRC5C   110000 perm   26 sec   (4157 perm/sec)   p_kst 1.400000e-02   p_cons 4.642364e-01   p_joint 2.790000e-02

Outputting figure to mutsig2_images.part000000000074/GPRC5C.4_1485_110000_0.014_0.46424_0.0279.png
                gene_name: GPRC5C
               theta_stop: 0.099 
                    nperm: 110000 
                     p_ks: 0.014 
        ci_ks_bounds_left: 0.013 
       ci_ks_bounds_right: 0.015 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.028 
     ci_joint_bounds_left: 0.027 
    ci_joint_bounds_right: 0.029 

Current progress: 40 percent done.
GPT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.219686e-02	ci left: 5.874096e-01	ci right 6.067338e-01	k: 5971	n:10000
Cons ci ratio: 3.355961e-02	ci left: 5.672458e-01	ci right 5.867093e-01	k: 5770	n:10000
KS ci ratio: 5.254030e-02	ci left: 3.480992e-01	ci right 3.669838e-01	k: 3575	n:10000
GPT2   10000 perm   2 sec   (5742 perm/sec)   p_kst 3.575000e-01   p_cons 5.770000e-01   p_joint 5.971000e-01

Outputting figure to mutsig2_images.part000000000074/GPT2.4_1616_10000_0.3575_0.577_0.5971.png
                gene_name: GPT2
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 42 percent done.
GRB14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.864387e-02	ci left: 1.911149e-01	ci right 2.068608e-01	k: 1989	n:10000
Cons ci ratio: 5.621107e-02	ci left: 3.179062e-01	ci right 3.363946e-01	k: 3271	n:10000
KS ci ratio: 1.229247e-01	ci left: 8.659902e-02	ci right 9.803975e-02	k: 922	n:10000
GRB14   10000 perm   2 sec   (5864 perm/sec)   p_kst 9.220000e-02   p_cons 3.271000e-01   p_joint 1.989000e-01

Joint ci ratio: 5.895144e-02	ci left: 1.756857e-01	ci right 1.864072e-01	k: 3620	n:20000
Cons ci ratio: 4.025369e-02	ci left: 3.151279e-01	ci right 3.281240e-01	k: 6432	n:20000
KS ci ratio: 8.715687e-02	ci left: 8.783284e-02	ci right 9.588628e-02	k: 1836	n:20000
GRB14   20000 perm   4 sec   (5277 perm/sec)   p_kst 9.180000e-02   p_cons 3.216000e-01   p_joint 1.810000e-01

Outputting figure to mutsig2_images.part000000000074/GRB14.4_1679_20000_0.0918_0.3216_0.181.png
                gene_name: GRB14
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.092 
        ci_ks_bounds_left: 0.088 
       ci_ks_bounds_right: 0.096 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 43 percent done.
GRIK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.929105e-02	ci left: 1.885544e-01	ci right 2.042229e-01	k: 1963	n:10000
Cons ci ratio: 1.406444e-02	ci left: 8.796083e-01	ci right 8.921659e-01	k: 8860	n:10000
KS ci ratio: 9.379027e-02	ci left: 1.416816e-01	ci right 1.557237e-01	k: 1486	n:10000
GRIK4   10000 perm   2 sec   (5386 perm/sec)   p_kst 1.486000e-01   p_cons 8.860000e-01   p_joint 1.963000e-01

Outputting figure to mutsig2_images.part000000000074/GRIK4.4_2947_10000_0.1486_0.886_0.1963.png
                gene_name: GRIK4
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 45 percent done.
GPR37
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.081873e-02	ci left: 4.698654e-01	ci right 4.895465e-01	k: 4797	n:10000
Cons ci ratio: 6.958397e-02	ci left: 2.324462e-01	ci right 2.493050e-01	k: 2408	n:10000
KS ci ratio: 4.511523e-02	ci left: 4.203680e-01	ci right 4.398728e-01	k: 4301	n:10000
GPR37   10000 perm   2 sec   (6039 perm/sec)   p_kst 4.301000e-01   p_cons 2.408000e-01   p_joint 4.797000e-01

Outputting figure to mutsig2_images.part000000000074/GPR37.3_1850_10000_0.4301_0.2408_0.4797.png
                gene_name: GPR37
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 47 percent done.
GPR65
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.229991e-02	ci left: 7.469526e-01	ci right 7.638984e-01	k: 7555	n:10000
KS ci ratio: 1.779247e-02	ci left: 8.216784e-01	ci right 8.365294e-01	k: 8292	n:10000
GPR65   10000 perm   2 sec   (6374 perm/sec)   p_kst 8.292000e-01   p_cons 7.555000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000074/GPR65.3_1018_10000_0.8292_0.7555_1.png
                gene_name: GPR65
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 49 percent done.
GPR77
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.989902e-02	ci left: 1.861912e-01	ci right 2.017874e-01	k: 1939	n:10000
Cons ci ratio: 4.803364e-03	ci left: 9.827447e-01	ci right 9.875666e-01	k: 9853	n:10000
KS ci ratio: 1.381586e-01	ci left: 6.933115e-02	ci right 7.971834e-02	k: 744	n:10000
GPR77   10000 perm   2 sec   (6379 perm/sec)   p_kst 7.440000e-02   p_cons 9.853000e-01   p_joint 1.939000e-01

Joint ci ratio: 4.785010e-02	ci left: 2.452008e-01	ci right 2.572716e-01	k: 5024	n:20000
Cons ci ratio: 3.199291e-03	ci left: 9.852264e-01	ci right 9.884297e-01	k: 19738	n:20000
KS ci ratio: 9.996020e-02	ci left: 6.782007e-02	ci right 7.500514e-02	k: 1427	n:20000
GPR77   20000 perm   4 sec   (5636 perm/sec)   p_kst 7.135000e-02   p_cons 9.869000e-01   p_joint 2.512000e-01

Outputting figure to mutsig2_images.part000000000074/GPR77.3_1018_20000_0.07135_0.9869_0.2512.png
                gene_name: GPR77
               theta_stop: 0.100 
                    nperm: 20000 
                     p_ks: 0.071 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.075 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 51 percent done.
GPR78
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.658335e-02	ci left: 3.150282e-01	ci right 3.334743e-01	k: 3242	n:10000
Cons ci ratio: 1.237387e-01	ci left: 8.552985e-02	ci right 9.690958e-02	k: 911	n:10000
KS ci ratio: 4.930512e-02	ci left: 3.776368e-01	ci right 3.968289e-01	k: 3872	n:10000
GPR78   10000 perm   2 sec   (6125 perm/sec)   p_kst 3.872000e-01   p_cons 9.110000e-02   p_joint 3.242000e-01

Joint ci ratio: 6.004773e-02	ci left: 1.703494e-01	ci right 1.809451e-01	k: 3512	n:20000
Cons ci ratio: 8.267273e-02	ci left: 9.685709e-02	ci right 1.052593e-01	k: 2020	n:20000
KS ci ratio: 3.505920e-02	ci left: 3.778497e-01	ci right 3.913838e-01	k: 7692	n:20000
GPR78   20000 perm   4 sec   (5453 perm/sec)   p_kst 3.846000e-01   p_cons 1.010000e-01   p_joint 1.756000e-01

Outputting figure to mutsig2_images.part000000000074/GPR78.3_1104_20000_0.3846_0.101_0.1756.png
                gene_name: GPR78
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.097 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 53 percent done.
GPR97
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.544893e-02	ci left: 8.587584e-01	ci right 8.722279e-01	k: 8656	n:10000
Cons ci ratio: 3.619696e-02	ci left: 5.298707e-01	ci right 5.495061e-01	k: 5397	n:10000
KS ci ratio: 2.866147e-02	ci left: 6.421684e-01	ci right 6.609432e-01	k: 6516	n:10000
GPR97   10000 perm   2 sec   (6092 perm/sec)   p_kst 6.516000e-01   p_cons 5.397000e-01   p_joint 8.656000e-01

Outputting figure to mutsig2_images.part000000000074/GPR97.3_1698_10000_0.6516_0.5397_0.8656.png
                gene_name: GPR97
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 55 percent done.
GPRASP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.085277e-01	ci left: 1.091029e-01	ci right 1.217221e-01	k: 1153	n:10000
Cons ci ratio: 1.972249e-01	ci left: 3.424249e-02	ci right 4.182967e-02	k: 379	n:10000
KS ci ratio: 3.818818e-02	ci left: 5.031509e-01	ci right 5.228415e-01	k: 5130	n:10000
GPRASP2   10000 perm   2 sec   (5527 perm/sec)   p_kst 5.130000e-01   p_cons 3.790000e-02   p_joint 1.153000e-01

Joint ci ratio: 7.313472e-02	ci left: 1.209876e-01	ci right 1.302216e-01	k: 2511	n:20000
Cons ci ratio: 1.296634e-01	ci left: 4.085991e-02	ci right 4.657370e-02	k: 873	n:20000
KS ci ratio: 2.708896e-02	ci left: 5.044961e-01	ci right 5.184006e-01	k: 10229	n:20000
GPRASP2   20000 perm   4 sec   (4984 perm/sec)   p_kst 5.114500e-01   p_cons 4.365000e-02   p_joint 1.255500e-01

Joint ci ratio: 6.553002e-02	ci left: 1.030637e-01	ci right 1.100793e-01	k: 3196	n:30000
Cons ci ratio: 1.047476e-01	ci left: 4.225917e-02	ci right 4.696287e-02	k: 1337	n:30000
KS ci ratio: 2.206922e-02	ci left: 5.068929e-01	ci right 5.182380e-01	k: 15377	n:30000
GPRASP2   30000 perm   6 sec   (4747 perm/sec)   p_kst 5.125667e-01   p_cons 4.456667e-02   p_joint 1.065333e-01

Joint ci ratio: 5.509863e-02	ci left: 1.092216e-01	ci right 1.154348e-01	k: 4492	n:40000
Cons ci ratio: 9.079436e-02	ci left: 4.249988e-02	ci right 4.656658e-02	k: 1780	n:40000
KS ci ratio: 1.909425e-02	ci left: 5.081385e-01	ci right 5.179596e-01	k: 20522	n:40000
GPRASP2   40000 perm   9 sec   (4539 perm/sec)   p_kst 5.130500e-01   p_cons 4.450000e-02   p_joint 1.123000e-01

Outputting figure to mutsig2_images.part000000000074/GPRASP2.3_2521_40000_0.51305_0.0445_0.1123.png
                gene_name: GPRASP2
               theta_stop: 0.091 
                    nperm: 40000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.044 
      ci_cons_bounds_left: 0.042 
     ci_cons_bounds_right: 0.047 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 57 percent done.
GPRIN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.833421e-03	ci left: 9.932998e-01	ci right 9.962004e-01	k: 9949	n:10000
KS ci ratio: 2.385736e-02	ci left: 7.208794e-01	ci right 7.383866e-01	k: 7297	n:10000
GPRIN2   10000 perm   2 sec   (6445 perm/sec)   p_kst 7.297000e-01   p_cons 9.949000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000074/GPRIN2.3_1381_10000_0.7297_0.9949_1.png
                gene_name: GPRIN2
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 1.00 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 58 percent done.
GRAMD1C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.159567e-02	ci left: 9.140975e-01	ci right 9.248566e-01	k: 9196	n:10000
KS ci ratio: 8.123819e-03	ci left: 9.548231e-01	ci right 9.627068e-01	k: 9589	n:10000
GRAMD1C   10000 perm   2 sec   (5904 perm/sec)   p_kst 9.589000e-01   p_cons 9.196000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000074/GRAMD1C.3_2061_10000_0.9589_0.9196_1.png
                gene_name: GRAMD1C
               theta_stop: 0.012 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 60 percent done.
GREM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.603533e-02	ci left: 1.644533e-01	ci right 1.793384e-01	k: 1718	n:10000
Cons ci ratio: 4.661919e-02	ci left: 4.044221e-01	ci right 4.238280e-01	k: 4141	n:10000
KS ci ratio: 1.148705e-01	ci left: 9.827781e-02	ci right 1.103538e-01	k: 1042	n:10000
GREM2   10000 perm   2 sec   (5461 perm/sec)   p_kst 1.042000e-01   p_cons 4.141000e-01   p_joint 1.718000e-01

Joint ci ratio: 6.854230e-02	ci left: 1.357114e-01	ci right 1.453933e-01	k: 2810	n:20000
Cons ci ratio: 3.317245e-02	ci left: 4.042692e-01	ci right 4.179566e-01	k: 8222	n:20000
KS ci ratio: 8.140165e-02	ci left: 9.965488e-02	ci right 1.081607e-01	k: 2077	n:20000
GREM2   20000 perm   4 sec   (5229 perm/sec)   p_kst 1.038500e-01   p_cons 4.111000e-01   p_joint 1.405000e-01

Outputting figure to mutsig2_images.part000000000074/GREM2.3_511_20000_0.10385_0.4111_0.1405.png
                gene_name: GREM2
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.100 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 62 percent done.
GRHL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.766072e-02	ci left: 2.427230e-01	ci right 2.598221e-01	k: 2512	n:10000
Cons ci ratio: 1.949659e-02	ci left: 7.937479e-01	ci right 8.094760e-01	k: 8017	n:10000
KS ci ratio: 1.328380e-01	ci left: 7.475563e-02	ci right 8.549047e-02	k: 800	n:10000
GRHL3   10000 perm   2 sec   (5894 perm/sec)   p_kst 8.000000e-02   p_cons 8.017000e-01   p_joint 2.512000e-01

Joint ci ratio: 5.522945e-02	ci left: 1.956132e-01	ci right 2.067738e-01	k: 4023	n:20000
Cons ci ratio: 1.373820e-02	ci left: 7.972169e-01	ci right 8.082950e-01	k: 16056	n:20000
KS ci ratio: 9.249649e-02	ci left: 7.857610e-02	ci right 8.624582e-02	k: 1647	n:20000
GRHL3   20000 perm   4 sec   (5291 perm/sec)   p_kst 8.235000e-02   p_cons 8.028000e-01   p_joint 2.011500e-01

Outputting figure to mutsig2_images.part000000000074/GRHL3.3_1909_20000_0.08235_0.8028_0.20115.png
                gene_name: GRHL3
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.082 
        ci_ks_bounds_left: 0.079 
       ci_ks_bounds_right: 0.086 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 64 percent done.
GPR37L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.311172e-02	ci left: 4.427095e-01	ci right 4.623181e-01	k: 4525	n:10000
Cons ci ratio: 5.931317e-02	ci left: 2.948935e-01	ci right 3.130208e-01	k: 3039	n:10000
KS ci ratio: 7.411193e-02	ci left: 2.104338e-01	ci right 2.267305e-01	k: 2185	n:10000
GPR37L1   10000 perm   2 sec   (4683 perm/sec)   p_kst 2.185000e-01   p_cons 3.039000e-01   p_joint 4.525000e-01

Outputting figure to mutsig2_images.part000000000074/GPR37L1.2_1454_10000_0.2185_0.3039_0.4525.png
                gene_name: GPR37L1
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 66 percent done.
GPR39
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.961964e-02	ci left: 4.847535e-01	ci right 5.044496e-01	k: 4946	n:10000
Cons ci ratio: 2.731015e-02	ci left: 6.639075e-01	ci right 6.823916e-01	k: 6732	n:10000
KS ci ratio: 1.520741e-01	ci left: 5.754436e-02	ci right 6.711256e-02	k: 622	n:10000
GPR39   10000 perm   2 sec   (4883 perm/sec)   p_kst 6.220000e-02   p_cons 6.732000e-01   p_joint 4.946000e-01

Joint ci ratio: 2.862659e-02	ci left: 4.769019e-01	ci right 4.908028e-01	k: 9677	n:20000
Cons ci ratio: 1.923075e-02	ci left: 6.685089e-01	ci right 6.815401e-01	k: 13501	n:20000
KS ci ratio: 1.087501e-01	ci left: 5.767339e-02	ci right 6.435494e-02	k: 1219	n:20000
GPR39   20000 perm   4 sec   (5038 perm/sec)   p_kst 6.095000e-02   p_cons 6.750500e-01   p_joint 4.838500e-01

Joint ci ratio: 3.933965e-02	ci left: 2.437502e-01	ci right 2.535651e-01	k: 7459	n:30000
Cons ci ratio: 1.566207e-02	ci left: 6.708380e-01	ci right 6.814612e-01	k: 20285	n:30000
KS ci ratio: 8.843500e-02	ci left: 5.874203e-02	ci right 6.420994e-02	k: 1843	n:30000
GPR39   30000 perm   6 sec   (5035 perm/sec)   p_kst 6.143333e-02   p_cons 6.761667e-01   p_joint 2.486333e-01

Outputting figure to mutsig2_images.part000000000074/GPR39.2_1370_30000_0.061433_0.67617_0.24863.png
                gene_name: GPR39
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.061 
        ci_ks_bounds_left: 0.059 
       ci_ks_bounds_right: 0.064 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 68 percent done.
GPR52
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.482342e-02	ci left: 3.289257e-01	ci right 3.475686e-01	k: 3382	n:10000
Cons ci ratio: 2.670404e-02	ci left: 6.737778e-01	ci right 6.921155e-01	k: 6830	n:10000
KS ci ratio: 5.714316e-02	ci left: 3.107615e-01	ci right 3.291435e-01	k: 3199	n:10000
GPR52   10000 perm   2 sec   (5438 perm/sec)   p_kst 3.199000e-01   p_cons 6.830000e-01   p_joint 3.382000e-01

Outputting figure to mutsig2_images.part000000000074/GPR52.2_1090_10000_0.3199_0.683_0.3382.png
                gene_name: GPR52
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 70 percent done.
GPR6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.426275e-02	ci left: 7.141148e-01	ci right 7.317552e-01	k: 7230	n:10000
KS ci ratio: 3.858751e-02	ci left: 4.979503e-01	ci right 5.176452e-01	k: 5078	n:10000
GPR6   10000 perm   2 sec   (6556 perm/sec)   p_kst 5.078000e-01   p_cons 7.230000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000074/GPR6.2_1093_10000_0.5078_0.723_1.png
                gene_name: GPR6
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
GPR61
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.231157e-02	ci left: 4.519911e-01	ci right 4.716311e-01	k: 4618	n:10000
Cons ci ratio: 6.149978e-02	ci left: 2.799299e-01	ci right 2.977933e-01	k: 2888	n:10000
KS ci ratio: 5.967958e-02	ci left: 2.923162e-01	ci right 3.103997e-01	k: 3013	n:10000
GPR61   10000 perm   2 sec   (6405 perm/sec)   p_kst 3.013000e-01   p_cons 2.888000e-01   p_joint 4.618000e-01

Outputting figure to mutsig2_images.part000000000074/GPR61.2_1360_10000_0.3013_0.2888_0.4618.png
                gene_name: GPR61
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 74 percent done.
GPR75
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.652901e-03	ci left: 9.837165e-01	ci right 9.883940e-01	k: 9862	n:10000
Cons ci ratio: 1.512887e-02	ci left: 8.636592e-01	ci right 8.769242e-01	k: 8704	n:10000
KS ci ratio: 1.377056e-02	ci left: 8.839084e-01	ci right 8.962634e-01	k: 8902	n:10000
GPR75   10000 perm   2 sec   (5504 perm/sec)   p_kst 8.902000e-01   p_cons 8.704000e-01   p_joint 9.862000e-01

Outputting figure to mutsig2_images.part000000000074/GPR75.2_1627_10000_0.8902_0.8704_0.9862.png
                gene_name: GPR75
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 75 percent done.
GPR83
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.338745e-02	ci left: 8.894412e-01	ci right 9.015273e-01	k: 8956	n:10000
Cons ci ratio: 3.247189e-02	ci left: 5.832952e-01	ci right 6.026506e-01	k: 5930	n:10000
KS ci ratio: 4.840307e-02	ci left: 3.863960e-01	ci right 4.056646e-01	k: 3960	n:10000
GPR83   10000 perm   2 sec   (6428 perm/sec)   p_kst 3.960000e-01   p_cons 5.930000e-01   p_joint 8.956000e-01

Outputting figure to mutsig2_images.part000000000074/GPR83.2_1288_10000_0.396_0.593_0.8956.png
                gene_name: GPR83
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 77 percent done.
GPR85
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.566060e-02	ci left: 8.554928e-01	ci right 8.690954e-01	k: 8624	n:10000
KS ci ratio: 2.380899e-02	ci left: 7.216873e-01	ci right 7.391782e-01	k: 7305	n:10000
GPR85   10000 perm   2 sec   (6566 perm/sec)   p_kst 7.305000e-01   p_cons 8.624000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000074/GPR85.2_1117_10000_0.7305_0.8624_1.png
                gene_name: GPR85
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
GPRC6A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.199590e-02	ci left: 3.528704e-01	ci right 3.718099e-01	k: 3623	n:10000
KS ci ratio: 1.700177e-02	ci left: 8.343964e-01	ci right 8.488040e-01	k: 8417	n:10000
GPRC6A   10000 perm   2 sec   (5718 perm/sec)   p_kst 8.417000e-01   p_cons 3.623000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000074/GPRC6A.2_2805_10000_0.8417_0.3623_1.png
                gene_name: GPRC6A
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
GPRIN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.226475e-02	ci left: 1.458000e-01	ci right 1.600028e-01	k: 1528	n:10000
Cons ci ratio: 8.670614e-02	ci left: 1.622916e-01	ci right 1.771013e-01	k: 1696	n:10000
KS ci ratio: 1.820645e-01	ci left: 4.025478e-02	ci right 4.841334e-02	k: 442	n:10000
GPRIN1   10000 perm   2 sec   (5595 perm/sec)   p_kst 4.420000e-02   p_cons 1.696000e-01   p_joint 1.528000e-01

Joint ci ratio: 8.073127e-02	ci left: 1.011769e-01	ci right 1.097382e-01	k: 2108	n:20000
Cons ci ratio: 6.076237e-02	ci left: 1.669904e-01	ci right 1.775051e-01	k: 3444	n:20000
KS ci ratio: 1.302882e-01	ci left: 4.047238e-02	ci right 4.616135e-02	k: 865	n:20000
GPRIN1   20000 perm   4 sec   (4832 perm/sec)   p_kst 4.325000e-02   p_cons 1.722000e-01   p_joint 1.054000e-01

Joint ci ratio: 5.599964e-02	ci left: 1.364542e-01	ci right 1.443489e-01	k: 4211	n:30000
Cons ci ratio: 4.966186e-02	ci left: 1.676789e-01	ci right 1.762514e-01	k: 5158	n:30000
KS ci ratio: 1.073782e-01	ci left: 4.024502e-02	ci right 4.484410e-02	k: 1275	n:30000
GPRIN1   30000 perm   7 sec   (4610 perm/sec)   p_kst 4.250000e-02   p_cons 1.719333e-01   p_joint 1.403667e-01

Joint ci ratio: 3.822266e-02	ci left: 2.042050e-01	ci right 2.121874e-01	k: 8327	n:40000
Cons ci ratio: 4.270769e-02	ci left: 1.702465e-01	ci right 1.777009e-01	k: 6958	n:40000
KS ci ratio: 9.305924e-02	ci left: 4.049500e-02	ci right 4.447176e-02	k: 1698	n:40000
GPRIN1   40000 perm   9 sec   (4513 perm/sec)   p_kst 4.245000e-02   p_cons 1.739500e-01   p_joint 2.081750e-01

Outputting figure to mutsig2_images.part000000000074/GPRIN1.2_3031_40000_0.04245_0.17395_0.20817.png
                gene_name: GPRIN1
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.042 
        ci_ks_bounds_left: 0.040 
       ci_ks_bounds_right: 0.044 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 83 percent done.
GPSM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.344901e-03	ci left: 9.417001e-01	ci right 9.506377e-01	k: 9463	n:10000
Cons ci ratio: 5.816980e-02	ci left: 3.031235e-01	ci right 3.213860e-01	k: 3122	n:10000
KS ci ratio: 3.967515e-02	ci left: 4.840539e-01	ci right 5.037497e-01	k: 4939	n:10000
GPSM2   10000 perm   2 sec   (6183 perm/sec)   p_kst 4.939000e-01   p_cons 3.122000e-01   p_joint 9.463000e-01

Outputting figure to mutsig2_images.part000000000074/GPSM2.2_2111_10000_0.4939_0.3122_0.9463.png
                gene_name: GPSM2
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 85 percent done.
GPX5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.018909e-02	ci left: 3.692789e-01	ci right 3.883917e-01	k: 3788	n:10000
KS ci ratio: 2.695096e-02	ci left: 6.697486e-01	ci right 6.881471e-01	k: 6790	n:10000
GPX5   10000 perm   1 sec   (6811 perm/sec)   p_kst 6.790000e-01   p_cons 3.788000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000074/GPX5.2_686_10000_0.679_0.3788_1.png
                gene_name: GPX5
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
GPX6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.349549e-02	ci left: 1.730058e-01	ci right 1.881808e-01	k: 1805	n:10000
Cons ci ratio: 3.099272e-02	ci left: 6.056818e-01	ci right 6.248510e-01	k: 6153	n:10000
KS ci ratio: 1.424392e-01	ci left: 6.536500e-02	ci right 7.548697e-02	k: 703	n:10000
GPX6   10000 perm   1 sec   (6737 perm/sec)   p_kst 7.030000e-02   p_cons 6.153000e-01   p_joint 1.805000e-01

Joint ci ratio: 5.896138e-02	ci left: 1.756363e-01	ci right 1.863567e-01	k: 3619	n:20000
Cons ci ratio: 2.203913e-02	ci left: 6.058577e-01	ci right 6.194096e-01	k: 12253	n:20000
KS ci ratio: 1.004153e-01	ci left: 6.723404e-02	ci right 7.439135e-02	k: 1415	n:20000
GPX6   20000 perm   3 sec   (5983 perm/sec)   p_kst 7.075000e-02   p_cons 6.126500e-01   p_joint 1.809500e-01

Joint ci ratio: 4.770276e-02	ci left: 1.793322e-01	ci right 1.881292e-01	k: 5511	n:30000
Cons ci ratio: 1.802489e-02	ci left: 6.063249e-01	ci right 6.173868e-01	k: 18356	n:30000
KS ci ratio: 8.141327e-02	ci left: 6.880553e-02	ci right 7.467774e-02	k: 2151	n:30000
GPX6   30000 perm   5 sec   (5704 perm/sec)   p_kst 7.170000e-02   p_cons 6.118667e-01   p_joint 1.837000e-01

Outputting figure to mutsig2_images.part000000000074/GPX6.2_686_30000_0.0717_0.61187_0.1837.png
                gene_name: GPX6
               theta_stop: 0.081 
                    nperm: 30000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.075 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 89 percent done.
GRAMD1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.289701e-03	ci left: 9.423233e-01	ci right 9.512142e-01	k: 9469	n:10000
Cons ci ratio: 4.422483e-02	ci left: 4.301399e-01	ci right 4.496951e-01	k: 4399	n:10000
KS ci ratio: 2.505158e-02	ci left: 7.009962e-01	ci right 7.188814e-01	k: 7100	n:10000
GRAMD1A   10000 perm   2 sec   (5466 perm/sec)   p_kst 7.100000e-01   p_cons 4.399000e-01   p_joint 9.469000e-01

Outputting figure to mutsig2_images.part000000000074/GRAMD1A.2_2255_10000_0.71_0.4399_0.9469.png
                gene_name: GRAMD1A
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 91 percent done.
GRAMD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.412556e-01	ci left: 6.642862e-02	ci right 7.662268e-02	k: 714	n:10000
Cons ci ratio: 2.016804e-01	ci left: 3.271977e-02	ci right 4.015343e-02	k: 363	n:10000
KS ci ratio: 2.944842e-02	ci left: 6.296981e-01	ci right 6.486207e-01	k: 6392	n:10000
GRAMD4   10000 perm   2 sec   (6321 perm/sec)   p_kst 6.392000e-01   p_cons 3.630000e-02   p_joint 7.140000e-02

Joint ci ratio: 9.150171e-02	ci left: 8.019134e-02	ci right 8.793009e-02	k: 1680	n:20000
Cons ci ratio: 1.433295e-01	ci left: 3.346084e-02	ci right 3.867516e-02	k: 720	n:20000
KS ci ratio: 2.060792e-02	ci left: 6.373185e-01	ci right 6.506396e-01	k: 12880	n:20000
GRAMD4   20000 perm   4 sec   (5633 perm/sec)   p_kst 6.440000e-01   p_cons 3.600000e-02   p_joint 8.400000e-02

Joint ci ratio: 7.400069e-02	ci left: 8.235939e-02	ci right 8.872114e-02	k: 2565	n:30000
Cons ci ratio: 1.161681e-01	ci left: 3.443865e-02	ci right 3.871837e-02	k: 1096	n:30000
KS ci ratio: 1.666054e-02	ci left: 6.431000e-01	ci right 6.539379e-01	k: 19456	n:30000
GRAMD4   30000 perm   6 sec   (5284 perm/sec)   p_kst 6.485333e-01   p_cons 3.653333e-02   p_joint 8.550000e-02

Joint ci ratio: 6.472316e-02	ci left: 8.127479e-02	ci right 8.673578e-02	k: 3359	n:40000
Cons ci ratio: 1.019386e-01	ci left: 3.382985e-02	ci right 3.748796e-02	k: 1425	n:40000
KS ci ratio: 1.445335e-02	ci left: 6.430458e-01	ci right 6.524327e-01	k: 25910	n:40000
GRAMD4   40000 perm   8 sec   (5096 perm/sec)   p_kst 6.477500e-01   p_cons 3.562500e-02   p_joint 8.397500e-02

Joint ci ratio: 5.779269e-02	ci left: 8.181967e-02	ci right 8.670873e-02	k: 4212	n:50000
Cons ci ratio: 9.058566e-02	ci left: 3.446236e-02	ci right 3.775178e-02	k: 1804	n:50000
KS ci ratio: 1.292045e-02	ci left: 6.437953e-01	ci right 6.521875e-01	k: 32400	n:50000
GRAMD4   50000 perm   10 sec   (4952 perm/sec)   p_kst 6.480000e-01   p_cons 3.608000e-02   p_joint 8.424000e-02

Outputting figure to mutsig2_images.part000000000074/GRAMD4.2_1809_50000_0.648_0.03608_0.08424.png
                gene_name: GRAMD4
               theta_stop: 0.091 
                    nperm: 50000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.036 
      ci_cons_bounds_left: 0.034 
     ci_cons_bounds_right: 0.038 
                  p_joint: 0.084 
     ci_joint_bounds_left: 0.082 
    ci_joint_bounds_right: 0.087 

Current progress: 92 percent done.
GREM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
KS ci ratio: 5.856484e-02	ci left: 3.002475e-01	ci right 3.184636e-01	k: 3093	n:10000
GREM1   10000 perm   1 sec   (6850 perm/sec)   p_kst 3.093000e-01   p_cons 1   p_joint 1

Outputting figure to mutsig2_images.part000000000074/GREM1.2_559_10000_0.3093_1_1.png
                gene_name: GREM1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 1 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
GRHL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.074258e-01	ci left: 1.111530e-01	ci right 1.238707e-01	k: 1174	n:10000
KS ci ratio: 8.683729e-03	ci left: 9.489806e-01	ci right 9.573529e-01	k: 9533	n:10000
GRHL2   10000 perm   2 sec   (6161 perm/sec)   p_kst 9.533000e-01   p_cons 1.174000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 7.638710e-02	ci left: 1.118880e-01	ci right 1.208239e-01	k: 2326	n:20000
KS ci ratio: 6.012673e-03	ci left: 9.521381e-01	ci right 9.579287e-01	k: 19102	n:20000
GRHL2   20000 perm   4 sec   (5484 perm/sec)   p_kst 9.551000e-01   p_cons 1.163000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000074/GRHL2.2_1942_20000_0.9551_0.1163_1.png
                gene_name: GRHL2
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
GRHPR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.997344e-03	ci left: 9.814524e-01	ci right 9.864599e-01	k: 9841	n:10000
Cons ci ratio: 2.832774e-02	ci left: 6.475005e-01	ci right 6.662080e-01	k: 6569	n:10000
KS ci ratio: 6.132368e-03	ci left: 9.730202e-01	ci right 9.790982e-01	k: 9762	n:10000
GRHPR   10000 perm   2 sec   (6658 perm/sec)   p_kst 9.762000e-01   p_cons 6.569000e-01   p_joint 9.841000e-01

Outputting figure to mutsig2_images.part000000000074/GRHPR.2_1023_10000_0.9762_0.6569_0.9841.png
                gene_name: GRHPR
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 98 percent done.
GRIK5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.447565e-02	ci left: 5.540129e-01	ci right 5.735499e-01	k: 5638	n:10000
KS ci ratio: 3.789885e-02	ci left: 5.069520e-01	ci right 5.266382e-01	k: 5168	n:10000
GRIK5   10000 perm   2 sec   (6003 perm/sec)   p_kst 5.168000e-01   p_cons 5.638000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000074/GRIK5.2_3019_10000_0.5168_0.5638_1.png
                gene_name: GRIK5
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000074
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 74 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1710>
Subject: Job 8004128: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1710>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000075> was used as the working directory.
Started at Sun Nov 11 15:06:31 2012
Results reported at Sun Nov 11 15:14:13 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000075.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000075.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 75  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000075.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    493.89 sec.
    Max Memory :      4803 MB
    Max Swap   :      7116 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
75
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 75
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 75: processing genes 6696 - 6785
Calculating significance of each gene.
Using projection method.
6696	GRIN2B	9.836196e-01
6697	GRIN2C	1
6698	GRIN2D	9.125805e-01
6699	GRIN3A	2.181641e-01
6700	GRIN3B	3.003131e-01
6701	GRINA	1
6702	GRINL1A	1
6703	GRIP1	3.723800e-01
6704	GRIP2	4.930501e-01
6705	GRIPAP1	3.506305e-01
6706	GRK1	3.783083e-01
6707	GRK4	9.072914e-01
6708	GRK5	8.777002e-01
6709	GRK6	8.687481e-01
6710	GRK7	1.078296e-01
6711	GRLF1	5.522223e-02
6712	GRM1	1.768020e-01
6713	GRM2	8.366457e-01
6714	GRM3	9.271220e-01
6715	GRM4	1
6716	GRM5	8.591849e-01
6717	GRM6	8.797278e-01
6718	GRM7	9.557293e-03
6719	GRM8	1
6720	GRN	4.944123e-01
6721	GRP	1.210229e-01
6722	GRPEL1	1
6723	GRPEL2	1.164412e-01
6724	GRPR	2.236245e-01
6725	GRSF1	1
6726	GRTP1	1
6727	GRWD1	2.285992e-01
6728	GRXCR1	1.553872e-01
6729	GRXCR2	1
6730	GSDMA	1
6731	GSDMB	1
6732	GSDMC	1
6733	GSDMD	5.430474e-01
6734	GSG1	1
6735	GSG1L	3.570833e-02
6736	GSG2	1
6737	GSK3A	1.189919e-01
6738	GSK3B	1
6739	GSN	8.542977e-01
6740	GSPT1	1
6741	GSPT2	1
6742	GSR	7.620244e-02
6743	GSS	6.266137e-01
6744	GSTA1	4.420945e-02
6745	GSTA2	2.272072e-01
6746	GSTA3	1
6747	GSTA4	4.316938e-01
6748	GSTA5	1.288555e-01
6749	GSTCD	1
6750	GSTK1	1
6751	GSTM1	1
6752	GSTM2	1
6753	GSTM3	4.561975e-01
6754	GSTM4	1.039942e-01
6755	GSTM5	1
6756	GSTO1	3.441361e-01
6757	GSTO2	1
6758	GSTP1	6.316835e-01
6759	GSTZ1	2.747623e-01
6760	GSX1	1
6761	GSX2	1
6762	GTDC1	8.405690e-01
6763	GTF2A1	7.774758e-01
6764	GTF2A1L	1
6765	GTF2A2	1
6766	GTF2B	3.429093e-01
6767	GTF2E1	3.540190e-01
6768	GTF2E2	1
6769	GTF2F1	8.943403e-01
6770	GTF2F2	1
6771	GTF2H1	5.891381e-01
6772	GTF2H2C	1
6773	GTF2H2D	1
6774	GTF2H3	4.425883e-01
6775	GTF2H4	4.290865e-01
6776	GTF2H5	1
6777	GTF2I	7.862011e-01
6778	GTF2IRD1	4.932872e-01
6779	GTF2IRD2	1
6780	GTF2IRD2B	1
6781	GTF3A	5.209955e-01
6782	GTF3C1	9.979181e-01
6783	GTF3C2	7.458329e-01
6784	GTF3C3	1
6785	GTF3C4	7.337071e-01
Done

Running MutSig 2:
Scatter job 75: processing genes 6696 - 6785
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
GRIN2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.924495e-02	ci left: 7.979081e-01	ci right 8.135134e-01	k: 8058	n:10000
Cons ci ratio: 3.379388e-02	ci left: 5.638367e-01	ci right 5.833204e-01	k: 5736	n:10000
KS ci ratio: 2.008940e-02	ci left: 7.839105e-01	ci right 7.999191e-01	k: 7920	n:10000
GRIN2B   10000 perm   3 sec   (3609 perm/sec)   p_kst 7.920000e-01   p_cons 5.736000e-01   p_joint 8.058000e-01

Outputting figure to mutsig2_images.part000000000075/GRIN2B.18_4503_10000_0.792_0.5736_0.8058.png
                gene_name: GRIN2B
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 2 percent done.
GRM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.323674e-02	ci left: 8.915942e-01	ci right 9.035731e-01	k: 8977	n:10000
Cons ci ratio: 1.594303e-02	ci left: 8.511065e-01	ci right 8.648842e-01	k: 8581	n:10000
KS ci ratio: 2.819591e-02	ci left: 6.496136e-01	ci right 6.682937e-01	k: 6590	n:10000
GRM3   10000 perm   2 sec   (4227 perm/sec)   p_kst 6.590000e-01   p_cons 8.581000e-01   p_joint 8.977000e-01

Outputting figure to mutsig2_images.part000000000075/GRM3.14_2660_10000_0.659_0.8581_0.8977.png
                gene_name: GRM3
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 4 percent done.
GRLF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.788656e-02	ci left: 8.201532e-01	ci right 8.350554e-01	k: 8277	n:10000
KS ci ratio: 2.754004e-02	ci left: 6.601821e-01	ci right 6.787191e-01	k: 6695	n:10000
GRLF1   10000 perm   3 sec   (3660 perm/sec)   p_kst 6.695000e-01   p_cons 8.277000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000075/GRLF1.13_4524_10000_0.6695_0.8277_1.png
                gene_name: GRLF1
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 7 percent done.
GRM8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.934669e-02	ci left: 3.772388e-01	ci right 3.964272e-01	k: 3868	n:10000
Cons ci ratio: 1.597573e-02	ci left: 8.505966e-01	ci right 8.643944e-01	k: 8576	n:10000
KS ci ratio: 6.067200e-02	ci left: 2.854779e-01	ci right 3.034419e-01	k: 2944	n:10000
GRM8   10000 perm   2 sec   (4960 perm/sec)   p_kst 2.944000e-01   p_cons 8.576000e-01   p_joint 3.868000e-01

Outputting figure to mutsig2_images.part000000000075/GRM8.13_2817_10000_0.2944_0.8576_0.3868.png
                gene_name: GRM8
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 9 percent done.
GRM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.483822e-01	ci left: 2.127733e-02	ci right 2.740406e-02	k: 242	n:10000
Cons ci ratio: 2.601440e-01	ci left: 1.930852e-02	ci right 2.517438e-02	k: 221	n:10000
KS ci ratio: 1.434278e-01	ci left: 6.449503e-02	ci right 7.455749e-02	k: 694	n:10000
GRM1   10000 perm   2 sec   (4393 perm/sec)   p_kst 6.940000e-02   p_cons 2.210000e-02   p_joint 2.420000e-02

Joint ci ratio: 2.044404e-01	ci left: 1.620275e-02	ci right 1.993924e-02	k: 360	n:20000
Cons ci ratio: 1.872141e-01	ci left: 1.943921e-02	ci right 2.350157e-02	k: 428	n:20000
KS ci ratio: 1.055174e-01	ci left: 6.113414e-02	ci right 6.799312e-02	k: 1290	n:20000
GRM1   20000 perm   5 sec   (3999 perm/sec)   p_kst 6.450000e-02   p_cons 2.140000e-02   p_joint 1.800000e-02

Joint ci ratio: 1.436101e-01	ci left: 2.249062e-02	ci right 2.600234e-02	k: 726	n:30000
Cons ci ratio: 1.414321e-01	ci left: 2.319840e-02	ci right 2.676107e-02	k: 748	n:30000
KS ci ratio: 8.490812e-02	ci left: 6.350998e-02	ci right 6.917435e-02	k: 1989	n:30000
GRM1   30000 perm   8 sec   (3851 perm/sec)   p_kst 6.630000e-02   p_cons 2.493333e-02   p_joint 2.420000e-02

Joint ci ratio: 1.277422e-01	ci left: 2.152896e-02	ci right 2.449084e-02	k: 919	n:40000
Cons ci ratio: 1.222126e-01	ci left: 2.354057e-02	ci right 2.662890e-02	k: 1002	n:40000
KS ci ratio: 7.358237e-02	ci left: 6.380708e-02	ci right 6.870611e-02	k: 2649	n:40000
GRM1   40000 perm   11 sec   (3777 perm/sec)   p_kst 6.622500e-02   p_cons 2.505000e-02   p_joint 2.297500e-02

Joint ci ratio: 1.332261e-01	ci left: 1.588502e-02	ci right 1.817155e-02	k: 850	n:50000
Cons ci ratio: 1.088550e-01	ci left: 2.390223e-02	ci right 2.667326e-02	k: 1263	n:50000
KS ci ratio: 6.747075e-02	ci left: 6.110231e-02	ci right 6.538857e-02	k: 3161	n:50000
GRM1   50000 perm   13 sec   (3714 perm/sec)   p_kst 6.322000e-02   p_cons 2.526000e-02   p_joint 1.700000e-02

Joint ci ratio: 1.068243e-01	ci left: 2.077622e-02	ci right 2.313700e-02	k: 1316	n:60000
Cons ci ratio: 9.987173e-02	ci left: 2.378171e-02	ci right 2.629786e-02	k: 1501	n:60000
KS ci ratio: 6.126022e-02	ci left: 6.192297e-02	ci right 6.585268e-02	k: 3832	n:60000
GRM1   60000 perm   16 sec   (3656 perm/sec)   p_kst 6.386667e-02   p_cons 2.501667e-02   p_joint 2.193333e-02

Joint ci ratio: 9.781547e-02	ci left: 2.133040e-02	ci right 2.353801e-02	k: 1569	n:70000
Cons ci ratio: 9.307349e-02	ci left: 2.356281e-02	ci right 2.587682e-02	k: 1729	n:70000
KS ci ratio: 5.710462e-02	ci left: 6.126752e-02	ci right 6.488309e-02	k: 4414	n:70000
GRM1   70000 perm   19 sec   (3602 perm/sec)   p_kst 6.305714e-02   p_cons 2.470000e-02   p_joint 2.241429e-02

Outputting figure to mutsig2_images.part000000000075/GRM1.12_3682_70000_0.063057_0.0247_0.022414.png
                gene_name: GRM1
               theta_stop: 0.098 
                    nperm: 70000 
                     p_ks: 0.063 
        ci_ks_bounds_left: 0.061 
       ci_ks_bounds_right: 0.065 
                   p_cons: 0.025 
      ci_cons_bounds_left: 0.024 
     ci_cons_bounds_right: 0.026 
                  p_joint: 0.022 
     ci_joint_bounds_left: 0.021 
    ci_joint_bounds_right: 0.024 

Current progress: 11 percent done.
GRM5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.062909e-02	ci left: 3.652005e-01	ci right 3.842725e-01	k: 3747	n:10000
Cons ci ratio: 4.377012e-02	ci left: 4.352269e-01	ci right 4.548052e-01	k: 4450	n:10000
KS ci ratio: 6.089172e-02	ci left: 2.839917e-01	ci right 3.019291e-01	k: 2929	n:10000
GRM5   10000 perm   2 sec   (4697 perm/sec)   p_kst 2.929000e-01   p_cons 4.450000e-01   p_joint 3.747000e-01

Outputting figure to mutsig2_images.part000000000075/GRM5.12_3675_10000_0.2929_0.445_0.3747.png
                gene_name: GRM5
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.38 

Current progress: 13 percent done.
GRM7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.736371e-02	ci left: 5.140556e-01	ci right 5.337305e-01	k: 5239	n:10000
KS ci ratio: 1.077657e-02	ci left: 9.246163e-01	ci right 9.347317e-01	k: 9298	n:10000
GRM7   10000 perm   2 sec   (4507 perm/sec)   p_kst 9.298000e-01   p_cons 5.239000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000075/GRM7.10_2863_10000_0.9298_0.5239_1.png
                gene_name: GRM7
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 15 percent done.
GRXCR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.267260e-02	ci left: 2.723040e-01	ci right 2.900236e-01	k: 2811	n:10000
Cons ci ratio: 5.588080e-02	ci left: 3.204868e-01	ci right 3.390125e-01	k: 3297	n:10000
KS ci ratio: 8.618673e-02	ci left: 1.639619e-01	ci right 1.788300e-01	k: 1713	n:10000
GRXCR1   10000 perm   2 sec   (5975 perm/sec)   p_kst 1.713000e-01   p_cons 3.297000e-01   p_joint 2.811000e-01

Outputting figure to mutsig2_images.part000000000075/GRXCR1.9_889_10000_0.1713_0.3297_0.2811.png
                gene_name: GRXCR1
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 17 percent done.
GRIN3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.793285e-01	ci left: 4.149837e-02	ci right 4.976893e-02	k: 455	n:10000
Cons ci ratio: 6.751719e-02	ci left: 2.435138e-01	ci right 2.606309e-01	k: 2520	n:10000
KS ci ratio: 2.489076e-01	ci left: 2.118344e-02	ci right 2.729802e-02	k: 241	n:10000
GRIN3A   10000 perm   2 sec   (4892 perm/sec)   p_kst 2.410000e-02   p_cons 2.520000e-01   p_joint 4.550000e-02

Joint ci ratio: 1.467418e-01	ci left: 3.191701e-02	ci right 3.701950e-02	k: 688	n:20000
Cons ci ratio: 4.779929e-02	ci left: 2.455976e-01	ci right 2.576747e-01	k: 5032	n:20000
KS ci ratio: 1.769473e-01	ci left: 2.182763e-02	ci right 2.611230e-02	k: 478	n:20000
GRIN3A   20000 perm   4 sec   (4449 perm/sec)   p_kst 2.390000e-02   p_cons 2.516000e-01   p_joint 3.440000e-02

Joint ci ratio: 8.354483e-02	ci left: 6.550338e-02	ci right 7.124721e-02	k: 2050	n:30000
Cons ci ratio: 4.060792e-02	ci left: 2.321639e-01	ci right 2.418204e-01	k: 7109	n:30000
KS ci ratio: 1.464210e-01	ci left: 2.162257e-02	ci right 2.507059e-02	k: 699	n:30000
GRIN3A   30000 perm   7 sec   (4276 perm/sec)   p_kst 2.330000e-02   p_cons 2.369667e-01   p_joint 6.833333e-02

Joint ci ratio: 9.834715e-02	ci left: 3.631826e-02	ci right 4.009916e-02	k: 1527	n:40000
Cons ci ratio: 3.584436e-02	ci left: 2.260322e-01	ci right 2.343070e-01	k: 9206	n:40000
KS ci ratio: 1.277422e-01	ci left: 2.152896e-02	ci right 2.449084e-02	k: 919	n:40000
GRIN3A   40000 perm   10 sec   (4165 perm/sec)   p_kst 2.297500e-02   p_cons 2.301500e-01   p_joint 3.817500e-02

Joint ci ratio: 1.013676e-01	ci left: 2.756604e-02	ci right 3.052897e-02	k: 1451	n:50000
Cons ci ratio: 3.209416e-02	ci left: 2.260983e-01	ci right 2.334931e-01	k: 11489	n:50000
KS ci ratio: 1.141548e-01	ci left: 2.172325e-02	ci right 2.437252e-02	k: 1151	n:50000
GRIN3A   50000 perm   12 sec   (4069 perm/sec)   p_kst 2.302000e-02   p_cons 2.297800e-01   p_joint 2.902000e-02

Joint ci ratio: 9.012432e-02	ci left: 2.918739e-02	ci right 3.195826e-02	k: 1833	n:60000
Cons ci ratio: 2.767177e-02	ci left: 2.471529e-01	ci right 2.541046e-01	k: 15037	n:60000
KS ci ratio: 1.050835e-01	ci left: 2.147429e-02	ci right 2.387219e-02	k: 1359	n:60000
GRIN3A   60000 perm   15 sec   (3985 perm/sec)   p_kst 2.265000e-02   p_cons 2.506167e-01   p_joint 3.055000e-02

Joint ci ratio: 7.454696e-02	ci left: 3.658163e-02	ci right 3.942826e-02	k: 2659	n:70000
Cons ci ratio: 2.562137e-02	ci left: 2.473787e-01	ci right 2.538134e-01	k: 17541	n:70000
KS ci ratio: 9.794317e-02	ci left: 2.127462e-02	ci right 2.347950e-02	k: 1565	n:70000
GRIN3A   70000 perm   18 sec   (3908 perm/sec)   p_kst 2.235714e-02   p_cons 2.505857e-01   p_joint 3.798571e-02

Outputting figure to mutsig2_images.part000000000075/GRIN3A.8_3384_70000_0.022357_0.25059_0.037986.png
                gene_name: GRIN3A
               theta_stop: 0.098 
                    nperm: 70000 
                     p_ks: 0.022 
        ci_ks_bounds_left: 0.021 
       ci_ks_bounds_right: 0.023 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.038 
     ci_joint_bounds_left: 0.037 
    ci_joint_bounds_right: 0.039 

Current progress: 20 percent done.
GRIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.948389e-01	ci left: 3.509982e-02	ci right 4.277176e-02	k: 388	n:10000
Cons ci ratio: 3.442409e-01	ci left: 1.059811e-02	ci right 1.509234e-02	k: 127	n:10000
KS ci ratio: 3.132093e-02	ci left: 6.006606e-01	ci right 6.198751e-01	k: 6103	n:10000
GRIP1   10000 perm   2 sec   (5140 perm/sec)   p_kst 6.103000e-01   p_cons 1.270000e-02   p_joint 3.880000e-02

Joint ci ratio: 8.269549e-02	ci left: 9.680801e-02	ci right 1.052084e-01	k: 2019	n:20000
Cons ci ratio: 2.231068e-01	ci left: 1.350289e-02	ci right 1.694016e-02	k: 303	n:20000
KS ci ratio: 2.237952e-02	ci left: 5.985361e-01	ci right 6.121332e-01	k: 12107	n:20000
GRIP1   20000 perm   4 sec   (4630 perm/sec)   p_kst 6.053500e-01   p_cons 1.515000e-02   p_joint 1.009500e-01

Joint ci ratio: 8.905410e-02	ci left: 5.795871e-02	ci right 6.339342e-02	k: 1819	n:30000
Cons ci ratio: 1.855002e-01	ci left: 1.330502e-02	ci right 1.605681e-02	k: 439	n:30000
KS ci ratio: 1.823809e-02	ci left: 6.007113e-01	ci right 6.118015e-01	k: 18188	n:30000
GRIP1   30000 perm   7 sec   (4442 perm/sec)   p_kst 6.062667e-01   p_cons 1.463333e-02   p_joint 6.063333e-02

Joint ci ratio: 5.719994e-02	ci left: 1.020614e-01	ci right 1.080960e-01	k: 4202	n:40000
Cons ci ratio: 1.604635e-01	ci left: 1.351942e-02	ci right 1.590179e-02	k: 587	n:40000
KS ci ratio: 1.493015e-02	ci left: 6.280541e-01	ci right 6.375266e-01	k: 25312	n:40000
GRIP1   40000 perm   9 sec   (4312 perm/sec)   p_kst 6.328000e-01   p_cons 1.467500e-02   p_joint 1.050500e-01

Joint ci ratio: 5.251027e-02	ci left: 9.764066e-02	ci right 1.029259e-01	k: 5013	n:50000
Cons ci ratio: 1.429324e-01	ci left: 1.375982e-02	ci right 1.589705e-02	k: 740	n:50000
KS ci ratio: 1.333274e-02	ci left: 6.292989e-01	ci right 6.377656e-01	k: 31677	n:50000
GRIP1   50000 perm   12 sec   (4213 perm/sec)   p_kst 6.335400e-01   p_cons 1.480000e-02   p_joint 1.002600e-01

Joint ci ratio: 5.960759e-02	ci left: 6.522575e-02	ci right 6.924957e-02	k: 4033	n:60000
Cons ci ratio: 1.319323e-01	ci left: 1.354258e-02	ci right 1.547147e-02	k: 869	n:60000
KS ci ratio: 1.218832e-02	ci left: 6.290118e-01	ci right 6.367420e-01	k: 37973	n:60000
GRIP1   60000 perm   15 sec   (4102 perm/sec)   p_kst 6.328833e-01   p_cons 1.448333e-02   p_joint 6.721667e-02

Joint ci ratio: 4.686337e-02	ci left: 8.873790e-02	ci right 9.301037e-02	k: 6360	n:70000
Cons ci ratio: 1.210611e-01	ci left: 1.386305e-02	ci right 1.566322e-02	k: 1032	n:70000
KS ci ratio: 1.128902e-02	ci left: 6.291019e-01	ci right 6.362585e-01	k: 44288	n:70000
GRIP1   70000 perm   17 sec   (4038 perm/sec)   p_kst 6.326857e-01   p_cons 1.474286e-02   p_joint 9.085714e-02

Joint ci ratio: 4.593828e-02	ci left: 8.150534e-02	ci right 8.534994e-02	k: 6673	n:80000
Cons ci ratio: 1.131243e-01	ci left: 1.395033e-02	ci right 1.563513e-02	k: 1182	n:80000
KS ci ratio: 1.056216e-02	ci left: 6.292358e-01	ci right 6.359296e-01	k: 50607	n:80000
GRIP1   80000 perm   20 sec   (3960 perm/sec)   p_kst 6.325875e-01   p_cons 1.477500e-02   p_joint 8.341250e-02

Joint ci ratio: 4.243898e-02	ci left: 8.474833e-02	ci right 8.843393e-02	k: 7792	n:90000
Cons ci ratio: 1.124982e-01	ci left: 1.256174e-02	ci right 1.406987e-02	k: 1197	n:90000
KS ci ratio: 9.976417e-03	ci left: 6.285724e-01	ci right 6.348858e-01	k: 56856	n:90000
GRIP1   90000 perm   23 sec   (3897 perm/sec)   p_kst 6.317333e-01   p_cons 1.330000e-02   p_joint 8.657778e-02

Joint ci ratio: 3.925427e-02	ci left: 8.889721e-02	ci right 9.246657e-02	k: 9067	n:100000
Cons ci ratio: 1.068111e-01	ci left: 1.257966e-02	ci right 1.400878e-02	k: 1328	n:100000
KS ci ratio: 9.465352e-03	ci left: 6.286917e-01	ci right 6.346807e-01	k: 63169	n:100000
GRIP1   100000 perm   26 sec   (3834 perm/sec)   p_kst 6.316900e-01   p_cons 1.328000e-02   p_joint 9.067000e-02

Joint ci ratio: 3.965866e-02	ci left: 7.995271e-02	ci right 8.319666e-02	k: 8972	n:110000
Cons ci ratio: 1.016960e-01	ci left: 1.264906e-02	ci right 1.401314e-02	k: 1465	n:110000
KS ci ratio: 9.022557e-03	ci left: 6.289509e-01	ci right 6.346604e-01	k: 69499	n:110000
GRIP1   110000 perm   29 sec   (3774 perm/sec)   p_kst 6.318091e-01   p_cons 1.331818e-02   p_joint 8.156364e-02

Joint ci ratio: 3.791281e-02	ci left: 8.024708e-02	ci right 8.335650e-02	k: 9815	n:120000
Cons ci ratio: 9.728247e-02	ci left: 1.270013e-02	ci right 1.400688e-02	k: 1601	n:120000
KS ci ratio: 8.643258e-03	ci left: 6.288134e-01	ci right 6.342803e-01	k: 75786	n:120000
GRIP1   120000 perm   32 sec   (3718 perm/sec)   p_kst 6.315500e-01   p_cons 1.334167e-02   p_joint 8.179167e-02

Outputting figure to mutsig2_images.part000000000075/GRIP1.6_3327_120000_0.63155_0.013342_0.081792.png
                gene_name: GRIP1
               theta_stop: 0.097 
                    nperm: 120000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.013 
      ci_cons_bounds_left: 0.013 
     ci_cons_bounds_right: 0.014 
                  p_joint: 0.082 
     ci_joint_bounds_left: 0.080 
    ci_joint_bounds_right: 0.083 

Current progress: 22 percent done.
GRK7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.068661e-02	ci left: 2.853789e-01	ci right 3.033411e-01	k: 2943	n:10000
Cons ci ratio: 3.618968e-02	ci left: 5.299709e-01	ci right 5.496059e-01	k: 5398	n:10000
KS ci ratio: 9.283885e-02	ci left: 1.442309e-01	ci right 1.583729e-01	k: 1512	n:10000
GRK7   10000 perm   2 sec   (6172 perm/sec)   p_kst 1.512000e-01   p_cons 5.398000e-01   p_joint 2.943000e-01

Outputting figure to mutsig2_images.part000000000075/GRK7.6_1676_10000_0.1512_0.5398_0.2943.png
                gene_name: GRK7
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 24 percent done.
GRM6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.349131e-02	ci left: 3.399509e-01	ci right 3.587369e-01	k: 3493	n:10000
Cons ci ratio: 1.489344e-02	ci left: 8.672346e-01	ci right 8.803468e-01	k: 8739	n:10000
KS ci ratio: 7.759865e-02	ci left: 1.953508e-01	ci right 2.112224e-01	k: 2032	n:10000
GRM6   10000 perm   2 sec   (5411 perm/sec)   p_kst 2.032000e-01   p_cons 8.739000e-01   p_joint 3.493000e-01

Outputting figure to mutsig2_images.part000000000075/GRM6.6_2674_10000_0.2032_0.8739_0.3493.png
                gene_name: GRM6
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 26 percent done.
GTF3C1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.383106e-02	ci left: 2.117161e-01	ci right 2.280474e-01	k: 2198	n:10000
Cons ci ratio: 5.488470e-02	ci left: 3.284292e-01	ci right 3.470654e-01	k: 3377	n:10000
KS ci ratio: 9.541650e-02	ci left: 1.374671e-01	ci right 1.513407e-01	k: 1443	n:10000
GTF3C1   10000 perm   2 sec   (4112 perm/sec)   p_kst 1.443000e-01   p_cons 3.377000e-01   p_joint 2.198000e-01

Outputting figure to mutsig2_images.part000000000075/GTF3C1.6_6478_10000_0.1443_0.3377_0.2198.png
                gene_name: GTF3C1
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 28 percent done.
GTDC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.874346e-02	ci left: 2.989585e-01	ci right 3.171535e-01	k: 3080	n:10000
Cons ci ratio: 6.177028e-02	ci left: 2.781469e-01	ci right 2.959773e-01	k: 2870	n:10000
KS ci ratio: 4.819129e-02	ci left: 3.884867e-01	ci right 4.077727e-01	k: 3981	n:10000
GTDC1   10000 perm   2 sec   (5607 perm/sec)   p_kst 3.981000e-01   p_cons 2.870000e-01   p_joint 3.080000e-01

Outputting figure to mutsig2_images.part000000000075/GTDC1.5_1413_10000_0.3981_0.287_0.308.png
                gene_name: GTDC1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 30 percent done.
GTF2IRD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.413353e-02	ci left: 5.589243e-01	ci right 5.784357e-01	k: 5687	n:10000
Cons ci ratio: 5.547877e-02	ci left: 3.236634e-01	ci right 3.422340e-01	k: 3329	n:10000
KS ci ratio: 1.543566e-02	ci left: 8.589625e-01	ci right 8.724236e-01	k: 8658	n:10000
GTF2IRD1   10000 perm   2 sec   (5583 perm/sec)   p_kst 8.658000e-01   p_cons 3.329000e-01   p_joint 5.687000e-01

Outputting figure to mutsig2_images.part000000000075/GTF2IRD1.5_2984_10000_0.8658_0.3329_0.5687.png
                gene_name: GTF2IRD1
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 33 percent done.
GRIN3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.161134e-02	ci left: 5.962428e-01	ci right 6.154955e-01	k: 6059	n:10000
Cons ci ratio: 5.960880e-02	ci left: 2.928118e-01	ci right 3.109038e-01	k: 3018	n:10000
KS ci ratio: 3.732628e-02	ci left: 5.145559e-01	ci right 5.342298e-01	k: 5244	n:10000
GRIN3B   10000 perm   2 sec   (5610 perm/sec)   p_kst 5.244000e-01   p_cons 3.018000e-01   p_joint 6.059000e-01

Outputting figure to mutsig2_images.part000000000075/GRIN3B.4_3168_10000_0.5244_0.3018_0.6059.png
                gene_name: GRIN3B
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 35 percent done.
GRIP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.882575e-02	ci left: 6.395531e-01	ci right 6.583601e-01	k: 6490	n:10000
Cons ci ratio: 1.477164e-02	ci left: 8.690740e-01	ci right 8.821063e-01	k: 8757	n:10000
KS ci ratio: 4.730797e-02	ci left: 3.973494e-01	ci right 4.167048e-01	k: 4070	n:10000
GRIP2   10000 perm   2 sec   (5232 perm/sec)   p_kst 4.070000e-01   p_cons 8.757000e-01   p_joint 6.490000e-01

Outputting figure to mutsig2_images.part000000000075/GRIP2.4_3525_10000_0.407_0.8757_0.649.png
                gene_name: GRIP2
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 37 percent done.
GRIPAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.221968e-01	ci left: 8.757121e-02	ci right 9.906697e-02	k: 932	n:10000
Cons ci ratio: 1.658582e-01	ci left: 4.849762e-02	ci right 5.736510e-02	k: 528	n:10000
KS ci ratio: 4.468541e-02	ci left: 4.250540e-01	ci right 4.445840e-01	k: 4348	n:10000
GRIPAP1   10000 perm   2 sec   (5704 perm/sec)   p_kst 4.348000e-01   p_cons 5.280000e-02   p_joint 9.320000e-02

Joint ci ratio: 7.937067e-02	ci left: 1.043692e-01	ci right 1.130449e-01	k: 2173	n:20000
Cons ci ratio: 1.169904e-01	ci left: 5.003249e-02	ci right 5.629822e-02	k: 1062	n:20000
KS ci ratio: 3.108474e-02	ci left: 4.359995e-01	ci right 4.498171e-01	k: 8858	n:20000
GRIPAP1   20000 perm   4 sec   (5078 perm/sec)   p_kst 4.429000e-01   p_cons 5.310000e-02   p_joint 1.086500e-01

Joint ci ratio: 6.769511e-02	ci left: 9.711984e-02	ci right 1.039577e-01	k: 3015	n:30000
Cons ci ratio: 9.871899e-02	ci left: 4.746312e-02	ci right 5.242450e-02	k: 1497	n:30000
KS ci ratio: 2.558460e-02	ci left: 4.333405e-01	ci right 4.446046e-01	k: 13169	n:30000
GRIPAP1   30000 perm   6 sec   (4836 perm/sec)   p_kst 4.389667e-01   p_cons 4.990000e-02   p_joint 1.005000e-01

Outputting figure to mutsig2_images.part000000000075/GRIPAP1.4_2684_30000_0.43897_0.0499_0.1005.png
                gene_name: GRIPAP1
               theta_stop: 0.099 
                    nperm: 30000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.050 
      ci_cons_bounds_left: 0.047 
     ci_cons_bounds_right: 0.052 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.097 
    ci_joint_bounds_right: 0.10 

Current progress: 39 percent done.
GSR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.788665e-02	ci left: 3.052063e-01	ci right 3.235020e-01	k: 3143	n:10000
Cons ci ratio: 9.219358e-02	ci left: 1.459962e-01	ci right 1.602065e-01	k: 1530	n:10000
KS ci ratio: 4.369047e-02	ci left: 4.361247e-01	ci right 4.557069e-01	k: 4459	n:10000
GSR   10000 perm   2 sec   (5793 perm/sec)   p_kst 4.459000e-01   p_cons 1.530000e-01   p_joint 3.143000e-01

Outputting figure to mutsig2_images.part000000000075/GSR.4_1621_10000_0.4459_0.153_0.3143.png
                gene_name: GSR
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 41 percent done.
GTF3C2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.499009e-02	ci left: 5.466977e-01	ci right 5.662694e-01	k: 5565	n:10000
KS ci ratio: 2.653771e-02	ci left: 6.764980e-01	ci right 6.947937e-01	k: 6857	n:10000
GTF3C2   10000 perm   2 sec   (5660 perm/sec)   p_kst 6.857000e-01   p_cons 5.565000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000075/GTF3C2.4_2808_10000_0.6857_0.5565_1.png
                gene_name: GTF3C2
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 43 percent done.
GRIN2C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.026381e-02	ci left: 3.685825e-01	ci right 3.876885e-01	k: 3781	n:10000
Cons ci ratio: 5.249459e-02	ci left: 3.484968e-01	ci right 3.673860e-01	k: 3579	n:10000
KS ci ratio: 1.044270e-01	ci left: 1.170141e-01	ci right 1.300061e-01	k: 1234	n:10000
GRIN2C   10000 perm   2 sec   (5657 perm/sec)   p_kst 1.234000e-01   p_cons 3.579000e-01   p_joint 3.781000e-01

Joint ci ratio: 5.512657e-02	ci left: 1.962069e-01	ci right 2.073799e-01	k: 4035	n:20000
Cons ci ratio: 3.728935e-02	ci left: 3.492111e-01	ci right 3.625309e-01	k: 7117	n:20000
KS ci ratio: 7.404775e-02	ci left: 1.183306e-01	ci right 1.274793e-01	k: 2457	n:20000
GRIN2C   20000 perm   4 sec   (5029 perm/sec)   p_kst 1.228500e-01   p_cons 3.558500e-01   p_joint 2.017500e-01

Outputting figure to mutsig2_images.part000000000075/GRIN2C.3_3750_20000_0.12285_0.35585_0.20175.png
                gene_name: GRIN2C
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 46 percent done.
GRIN2D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.840600e-02	ci left: 2.386708e-01	ci right 2.556767e-01	k: 2471	n:10000
Cons ci ratio: 1.932931e-01	ci left: 3.567168e-02	ci right 4.339951e-02	k: 394	n:10000
KS ci ratio: 3.556785e-02	ci left: 5.385833e-01	ci right 5.581885e-01	k: 5484	n:10000
GRIN2D   10000 perm   2 sec   (5268 perm/sec)   p_kst 5.484000e-01   p_cons 3.940000e-02   p_joint 2.471000e-01

Joint ci ratio: 8.051804e-02	ci left: 1.016679e-01	ci right 1.102470e-01	k: 2118	n:20000
Cons ci ratio: 1.423089e-01	ci left: 3.394357e-02	ci right 3.919227e-02	k: 730	n:20000
KS ci ratio: 2.505812e-02	ci left: 5.433237e-01	ci right 5.571617e-01	k: 11005	n:20000
GRIN2D   20000 perm   4 sec   (4724 perm/sec)   p_kst 5.502500e-01   p_cons 3.650000e-02   p_joint 1.059000e-01

Joint ci ratio: 7.070555e-02	ci left: 8.963796e-02	ci right 9.624112e-02	k: 2787	n:30000
Cons ci ratio: 1.160036e-01	ci left: 3.453584e-02	ci right 3.882115e-02	k: 1099	n:30000
KS ci ratio: 2.042107e-02	ci left: 5.455504e-01	ci right 5.568397e-01	k: 16536	n:30000
GRIN2D   30000 perm   7 sec   (4490 perm/sec)   p_kst 5.512000e-01   p_cons 3.663333e-02   p_joint 9.290000e-02

Joint ci ratio: 5.219684e-02	ci left: 1.203401e-01	ci right 1.268146e-01	k: 4942	n:40000
Cons ci ratio: 1.008437e-01	ci left: 3.456149e-02	ci right 3.825621e-02	k: 1455	n:40000
KS ci ratio: 1.763270e-02	ci left: 5.477862e-01	ci right 5.575562e-01	k: 22107	n:40000
GRIN2D   40000 perm   9 sec   (4363 perm/sec)   p_kst 5.526750e-01   p_cons 3.637500e-02   p_joint 1.235500e-01

Joint ci ratio: 4.777684e-02	ci left: 1.158178e-01	ci right 1.215065e-01	k: 5932	n:50000
Cons ci ratio: 9.066385e-02	ci left: 3.440367e-02	ci right 3.769048e-02	k: 1801	n:50000
KS ci ratio: 1.581581e-02	ci left: 5.469076e-01	ci right 5.556464e-01	k: 27564	n:50000
GRIN2D   50000 perm   12 sec   (4255 perm/sec)   p_kst 5.512800e-01   p_cons 3.602000e-02   p_joint 1.186400e-01

Outputting figure to mutsig2_images.part000000000075/GRIN2D.3_4059_50000_0.55128_0.03602_0.11864.png
                gene_name: GRIN2D
               theta_stop: 0.091 
                    nperm: 50000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.036 
      ci_cons_bounds_left: 0.034 
     ci_cons_bounds_right: 0.038 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 48 percent done.
GRM4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.466281e-02	ci left: 7.074534e-01	ci right 7.252204e-01	k: 7164	n:10000
KS ci ratio: 2.274638e-02	ci left: 7.394702e-01	ci right 7.565851e-01	k: 7481	n:10000
GRM4   10000 perm   2 sec   (5282 perm/sec)   p_kst 7.481000e-01   p_cons 7.164000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000075/GRM4.3_2779_10000_0.7481_0.7164_1.png
                gene_name: GRM4
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
GRN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.031520e-02	ci left: 4.760594e-01	ci right 4.957488e-01	k: 4859	n:10000
KS ci ratio: 5.598589e-03	ci left: 9.771688e-01	ci right 9.827467e-01	k: 9801	n:10000
GRN   10000 perm   2 sec   (6100 perm/sec)   p_kst 9.801000e-01   p_cons 4.859000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000075/GRN.3_1830_10000_0.9801_0.4859_1.png
                gene_name: GRN
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 52 percent done.
GRPR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.727471e-02	ci left: 3.097694e-01	ci right 3.281362e-01	k: 3189	n:10000
Cons ci ratio: 1.077899e-01	ci left: 1.104696e-01	ci right 1.231546e-01	k: 1167	n:10000
KS ci ratio: 1.522044e-01	ci left: 5.744795e-02	ci right 6.700903e-02	k: 621	n:10000
GRPR   10000 perm   2 sec   (6421 perm/sec)   p_kst 6.210000e-02   p_cons 1.167000e-01   p_joint 3.189000e-01

Joint ci ratio: 8.077409e-02	ci left: 1.010787e-01	ci right 1.096364e-01	k: 2106	n:20000
Cons ci ratio: 7.926844e-02	ci left: 1.046148e-01	ci right 1.132993e-01	k: 2178	n:20000
KS ci ratio: 1.063118e-01	ci left: 6.025648e-02	ci right 6.707105e-02	k: 1272	n:20000
GRPR   20000 perm   3 sec   (5717 perm/sec)   p_kst 6.360000e-02   p_cons 1.089000e-01   p_joint 1.053000e-01

Joint ci ratio: 7.921421e-02	ci left: 7.246949e-02	ci right 7.847970e-02	k: 2263	n:30000
Cons ci ratio: 6.230456e-02	ci left: 1.129231e-01	ci right 1.202180e-01	k: 3496	n:30000
KS ci ratio: 8.737952e-02	ci left: 6.011316e-02	ci right 6.563853e-02	k: 1885	n:30000
GRPR   30000 perm   6 sec   (5437 perm/sec)   p_kst 6.283333e-02   p_cons 1.165333e-01   p_joint 7.543333e-02

Outputting figure to mutsig2_images.part000000000075/GRPR.3_1167_30000_0.062833_0.11653_0.075433.png
                gene_name: GRPR
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.063 
        ci_ks_bounds_left: 0.060 
       ci_ks_bounds_right: 0.066 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.075 
     ci_joint_bounds_left: 0.072 
    ci_joint_bounds_right: 0.078 

Current progress: 54 percent done.
GRWD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.457650e-02	ci left: 4.262506e-01	ci right 4.457867e-01	k: 4360	n:10000
Cons ci ratio: 2.036945e-02	ci left: 7.792477e-01	ci right 7.953845e-01	k: 7874	n:10000
KS ci ratio: 5.257462e-02	ci left: 3.478011e-01	ci right 3.666822e-01	k: 3572	n:10000
GRWD1   10000 perm   2 sec   (6097 perm/sec)   p_kst 3.572000e-01   p_cons 7.874000e-01   p_joint 4.360000e-01

Outputting figure to mutsig2_images.part000000000075/GRWD1.3_1369_10000_0.3572_0.7874_0.436.png
                gene_name: GRWD1
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 57 percent done.
GSG1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.188009e-02	ci left: 4.570825e-01	ci right 4.767368e-01	k: 4669	n:10000
Cons ci ratio: 3.868797e-02	ci left: 4.966503e-01	ci right 5.163459e-01	k: 5065	n:10000
KS ci ratio: 5.893690e-02	ci left: 2.975703e-01	ci right 3.157424e-01	k: 3066	n:10000
GSG1L   10000 perm   2 sec   (6379 perm/sec)   p_kst 3.066000e-01   p_cons 5.065000e-01   p_joint 4.669000e-01

Outputting figure to mutsig2_images.part000000000075/GSG1L.3_1024_10000_0.3066_0.5065_0.4669.png
                gene_name: GSG1L
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 59 percent done.
GSK3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.915327e-02	ci left: 1.547295e-01	ci right 1.692679e-01	k: 1619	n:10000
Cons ci ratio: 4.531823e-02	ci left: 4.181748e-01	ci right 4.376672e-01	k: 4279	n:10000
KS ci ratio: 1.212673e-01	ci left: 8.883535e-02	ci right 1.004021e-01	k: 945	n:10000
GSK3A   10000 perm   2 sec   (6357 perm/sec)   p_kst 9.450000e-02   p_cons 4.279000e-01   p_joint 1.619000e-01

Joint ci ratio: 5.543648e-02	ci left: 1.944258e-01	ci right 2.055615e-01	k: 3999	n:20000
Cons ci ratio: 3.224483e-02	ci left: 4.180354e-01	ci right 4.317864e-01	k: 8498	n:20000
KS ci ratio: 8.500824e-02	ci left: 9.200023e-02	ci right 1.002176e-01	k: 1921	n:20000
GSK3A   20000 perm   4 sec   (5658 perm/sec)   p_kst 9.605000e-02   p_cons 4.249000e-01   p_joint 1.999500e-01

Outputting figure to mutsig2_images.part000000000075/GSK3A.3_1496_20000_0.09605_0.4249_0.19995.png
                gene_name: GSK3A
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.096 
        ci_ks_bounds_left: 0.092 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 61 percent done.
GSTA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.038389e-02	ci left: 9.294731e-01	ci right 9.392720e-01	k: 9345	n:10000
Cons ci ratio: 2.555722e-02	ci left: 6.926251e-01	ci right 7.106573e-01	k: 7017	n:10000
KS ci ratio: 1.872082e-02	ci left: 8.065373e-01	ci right 8.218792e-01	k: 8143	n:10000
GSTA1   10000 perm   2 sec   (6562 perm/sec)   p_kst 8.143000e-01   p_cons 7.017000e-01   p_joint 9.345000e-01

Outputting figure to mutsig2_images.part000000000075/GSTA1.3_693_10000_0.8143_0.7017_0.9345.png
                gene_name: GSTA1
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 63 percent done.
GSTM4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.501136e-02	ci left: 5.463971e-01	ci right 5.659702e-01	k: 5562	n:10000
Cons ci ratio: 3.287024e-02	ci left: 5.773758e-01	ci right 5.967734e-01	k: 5871	n:10000
KS ci ratio: 4.890240e-02	ci left: 3.815183e-01	ci right 4.007452e-01	k: 3911	n:10000
GSTM4   10000 perm   1 sec   (6767 perm/sec)   p_kst 3.911000e-01   p_cons 5.871000e-01   p_joint 5.562000e-01

Outputting figure to mutsig2_images.part000000000075/GSTM4.3_714_10000_0.3911_0.5871_0.5562.png
                gene_name: GSTM4
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 65 percent done.
GSTM5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.868041e-02	ci left: 6.418666e-01	ci right 6.606452e-01	k: 6513	n:10000
Cons ci ratio: 5.008264e-02	ci left: 3.702737e-01	ci right 3.893963e-01	k: 3798	n:10000
KS ci ratio: 1.295412e-02	ci left: 8.955947e-01	ci right 9.073703e-01	k: 9016	n:10000
GSTM5   10000 perm   2 sec   (6571 perm/sec)   p_kst 9.016000e-01   p_cons 3.798000e-01   p_joint 6.513000e-01

Outputting figure to mutsig2_images.part000000000075/GSTM5.3_689_10000_0.9016_0.3798_0.6513.png
                gene_name: GSTM5
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 67 percent done.
GRK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.869607e-02	ci left: 8.069435e-01	ci right 8.222728e-01	k: 8147	n:10000
KS ci ratio: 1.255649e-02	ci left: 9.011385e-01	ci right 9.126232e-01	k: 9070	n:10000
GRK1   10000 perm   1 sec   (6827 perm/sec)   p_kst 9.070000e-01   p_cons 8.147000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000075/GRK1.2_997_10000_0.907_0.8147_1.png
                gene_name: GRK1
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
GRM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.535597e-02	ci left: 6.959529e-01	ci right 7.139275e-01	k: 7050	n:10000
KS ci ratio: 3.508942e-02	ci left: 5.452950e-01	ci right 5.648729e-01	k: 5551	n:10000
GRM2   10000 perm   2 sec   (5993 perm/sec)   p_kst 5.551000e-01   p_cons 7.050000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000075/GRM2.2_2639_10000_0.5551_0.705_1.png
                gene_name: GRM2
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
GRPEL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.702838e-02	ci left: 1.977156e-01	ci right 2.136562e-01	k: 2056	n:10000
Cons ci ratio: 6.778681e-02	ci left: 2.420311e-01	ci right 2.591144e-01	k: 2505	n:10000
KS ci ratio: 8.600512e-02	ci left: 1.645515e-01	ci right 1.794401e-01	k: 1719	n:10000
GRPEL2   10000 perm   1 sec   (7044 perm/sec)   p_kst 1.719000e-01   p_cons 2.505000e-01   p_joint 2.056000e-01

Outputting figure to mutsig2_images.part000000000075/GRPEL2.2_694_10000_0.1719_0.2505_0.2056.png
                gene_name: GRPEL2
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 74 percent done.
GSDMD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.619696e-02	ci left: 5.298707e-01	ci right 5.495061e-01	k: 5397	n:10000
KS ci ratio: 9.317333e-03	ci left: 9.420117e-01	ci right 9.509260e-01	k: 9466	n:10000
GSDMD   10000 perm   2 sec   (6457 perm/sec)   p_kst 9.466000e-01   p_cons 5.397000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000075/GSDMD.2_1495_10000_0.9466_0.5397_1.png
                gene_name: GSDMD
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
GSN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.572823e-02	ci left: 6.898019e-01	ci right 7.078821e-01	k: 6989	n:10000
Cons ci ratio: 2.757116e-02	ci left: 6.596787e-01	ci right 6.782228e-01	k: 6690	n:10000
KS ci ratio: 3.840271e-02	ci left: 5.003504e-01	ci right 5.200436e-01	k: 5102	n:10000
GSN   10000 perm   2 sec   (6255 perm/sec)   p_kst 5.102000e-01   p_cons 6.690000e-01   p_joint 6.989000e-01

Outputting figure to mutsig2_images.part000000000075/GSN.2_2445_10000_0.5102_0.669_0.6989.png
                gene_name: GSN
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 78 percent done.
GSS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.127917e-02	ci left: 1.809743e-01	ci right 1.964075e-01	k: 1886	n:10000
KS ci ratio: 5.555378e-02	ci left: 3.230678e-01	ci right 3.416300e-01	k: 3323	n:10000
GSS   10000 perm   2 sec   (6529 perm/sec)   p_kst 3.323000e-01   p_cons 1.886000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000075/GSS.2_1473_10000_0.3323_0.1886_1.png
                gene_name: GSS
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
GSTA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.724413e-03	ci left: 9.373421e-01	ci right 9.465983e-01	k: 9421	n:10000
Cons ci ratio: 1.685487e-02	ci left: 8.367382e-01	ci right 8.510609e-01	k: 8440	n:10000
KS ci ratio: 1.309227e-02	ci left: 8.936454e-01	ci right 9.055207e-01	k: 8997	n:10000
GSTA2   10000 perm   1 sec   (7285 perm/sec)   p_kst 8.997000e-01   p_cons 8.440000e-01   p_joint 9.421000e-01

Outputting figure to mutsig2_images.part000000000075/GSTA2.2_693_10000_0.8997_0.844_0.9421.png
                gene_name: GSTA2
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 83 percent done.
GSTA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.306242e-02	ci left: 2.698288e-01	ci right 2.875003e-01	k: 2786	n:10000
Cons ci ratio: 4.741593e-02	ci left: 3.962539e-01	ci right 4.156010e-01	k: 4059	n:10000
KS ci ratio: 5.588080e-02	ci left: 3.204868e-01	ci right 3.390125e-01	k: 3297	n:10000
GSTA5   10000 perm   1 sec   (7279 perm/sec)   p_kst 3.297000e-01   p_cons 4.059000e-01   p_joint 2.786000e-01

Outputting figure to mutsig2_images.part000000000075/GSTA5.2_693_10000_0.3297_0.4059_0.2786.png
                gene_name: GSTA5
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 85 percent done.
GSTZ1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.984961e-02	ci left: 3.724625e-01	ci right 3.916063e-01	k: 3820	n:10000
Cons ci ratio: 4.501416e-02	ci left: 4.214646e-01	ci right 4.409755e-01	k: 4312	n:10000
KS ci ratio: 2.242059e-02	ci left: 7.449300e-01	ci right 7.619221e-01	k: 7535	n:10000
GSTZ1   10000 perm   1 sec   (7021 perm/sec)   p_kst 7.535000e-01   p_cons 4.312000e-01   p_joint 3.820000e-01

Outputting figure to mutsig2_images.part000000000075/GSTZ1.2_687_10000_0.7535_0.4312_0.382.png
                gene_name: GSTZ1
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 87 percent done.
GTF2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.319350e-02	ci left: 8.922095e-01	ci right 9.041574e-01	k: 8983	n:10000
Cons ci ratio: 5.509389e-02	ci left: 3.267412e-01	ci right 3.453544e-01	k: 3360	n:10000
KS ci ratio: 1.610905e-01	ci left: 5.138109e-02	ci right 6.047977e-02	k: 558	n:10000
GTF2B   10000 perm   1 sec   (7122 perm/sec)   p_kst 5.580000e-02   p_cons 3.360000e-01   p_joint 8.983000e-01

Joint ci ratio: 9.805602e-03	ci left: 8.843614e-01	ci right 8.931253e-01	k: 17776	n:20000
Cons ci ratio: 3.942005e-02	ci left: 3.242793e-01	ci right 3.373699e-01	k: 6616	n:20000
KS ci ratio: 1.139107e-01	ci left: 5.270727e-02	ci right 5.912260e-02	k: 1117	n:20000
GTF2B   20000 perm   3 sec   (6265 perm/sec)   p_kst 5.585000e-02   p_cons 3.308000e-01   p_joint 8.888000e-01

Joint ci ratio: 8.020755e-03	ci left: 8.848164e-01	ci right 8.919749e-01	k: 26653	n:30000
Cons ci ratio: 3.233349e-02	ci left: 3.234842e-01	ci right 3.341490e-01	k: 9864	n:30000
KS ci ratio: 9.463309e-02	ci left: 5.153421e-02	ci right 5.668591e-02	k: 1622	n:30000
GTF2B   30000 perm   5 sec   (5940 perm/sec)   p_kst 5.406667e-02   p_cons 3.288000e-01   p_joint 8.884333e-01

Outputting figure to mutsig2_images.part000000000075/GTF2B.2_979_30000_0.054067_0.3288_0.88843.png
                gene_name: GTF2B
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.054 
        ci_ks_bounds_left: 0.052 
       ci_ks_bounds_right: 0.057 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 89 percent done.
GTF2E1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.959290e-03	ci left: 9.744004e-01	ci right 9.803170e-01	k: 9775	n:10000
KS ci ratio: 2.181702e-02	ci left: 7.550454e-01	ci right 7.718009e-01	k: 7635	n:10000
GTF2E1   10000 perm   2 sec   (6567 perm/sec)   p_kst 7.635000e-01   p_cons 9.775000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000075/GTF2E1.2_1336_10000_0.7635_0.9775_1.png
                gene_name: GTF2E1
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
GTF2H1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.216969e-03	ci left: 9.636253e-01	ci right 9.706991e-01	k: 9673	n:10000
Cons ci ratio: 5.110775e-02	ci left: 3.608245e-01	ci right 3.798511e-01	k: 3703	n:10000
KS ci ratio: 2.586275e-02	ci left: 6.875840e-01	ci right 7.057013e-01	k: 6967	n:10000
GTF2H1   10000 perm   2 sec   (6273 perm/sec)   p_kst 6.967000e-01   p_cons 3.703000e-01   p_joint 9.673000e-01

Outputting figure to mutsig2_images.part000000000075/GTF2H1.2_1703_10000_0.6967_0.3703_0.9673.png
                gene_name: GTF2H1
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 93 percent done.
GTF2H4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.355138e-02	ci left: 8.870840e-01	ci right 8.992859e-01	k: 8933	n:10000
KS ci ratio: 4.770315e-03	ci left: 9.829604e-01	ci right 9.877507e-01	k: 9855	n:10000
GTF2H4   10000 perm   1 sec   (6820 perm/sec)   p_kst 9.855000e-01   p_cons 8.933000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000075/GTF2H4.2_1441_10000_0.9855_0.8933_1.png
                gene_name: GTF2H4
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
GTF2I
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.531729e-02	ci left: 5.420892e-01	ci right 5.616806e-01	k: 5519	n:10000
KS ci ratio: 2.162892e-01	ci left: 2.835310e-02	ci right 3.532314e-02	k: 317	n:10000
GTF2I   10000 perm   2 sec   (5926 perm/sec)   p_kst 3.170000e-02   p_cons 5.519000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 2.501765e-02	ci left: 5.441247e-01	ci right 5.579605e-01	k: 11021	n:20000
KS ci ratio: 1.493429e-01	ci left: 3.080828e-02	ci right 3.582860e-02	k: 665	n:20000
GTF2I   20000 perm   4 sec   (5292 perm/sec)   p_kst 3.325000e-02   p_cons 5.510500e-01   p_joint 1

Joint ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
Cons ci ratio: 2.050237e-02	ci left: 5.435817e-01	ci right 5.548754e-01	k: 16477	n:30000
KS ci ratio: 1.231557e-01	ci left: 3.065149e-02	ci right 3.470634e-02	k: 979	n:30000
GTF2I   30000 perm   6 sec   (5063 perm/sec)   p_kst 3.263333e-02   p_cons 5.492333e-01   p_joint 1

Joint ci ratio: 9.799510e-05	ci left: 9.999078e-01	ci right 1	k: 40000	n:40000
Cons ci ratio: 1.775786e-02	ci left: 5.442829e-01	ci right 5.540599e-01	k: 21967	n:40000
KS ci ratio: 1.063064e-01	ci left: 3.112472e-02	ci right 3.464352e-02	k: 1314	n:40000
GTF2I   40000 perm   8 sec   (4898 perm/sec)   p_kst 3.285000e-02   p_cons 5.491750e-01   p_joint 1

Joint ci ratio: 7.839686e-05	ci left: 9.999262e-01	ci right 1	k: 50000	n:50000
Cons ci ratio: 1.586125e-02	ci left: 5.454864e-01	ci right 5.542278e-01	k: 27493	n:50000
KS ci ratio: 9.537643e-02	ci left: 3.111920e-02	ci right 3.425536e-02	k: 1633	n:50000
GTF2I   50000 perm   10 sec   (4763 perm/sec)   p_kst 3.266000e-02   p_cons 5.498600e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000075/GTF2I.2_3129_50000_0.03266_0.54986_1.png
                gene_name: GTF2I
               theta_stop: 0.095 
                    nperm: 50000 
                     p_ks: 0.033 
        ci_ks_bounds_left: 0.031 
       ci_ks_bounds_right: 0.034 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
GTF3C4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.022198e-01	ci left: 1.216088e-01	ci right 1.348087e-01	k: 1281	n:10000
Cons ci ratio: 7.639762e-02	ci left: 2.003766e-01	ci right 2.163937e-01	k: 2083	n:10000
KS ci ratio: 5.219901e-02	ci left: 3.510811e-01	ci right 3.700002e-01	k: 3605	n:10000
GTF3C4   10000 perm   2 sec   (5957 perm/sec)   p_kst 3.605000e-01   p_cons 2.083000e-01   p_joint 1.281000e-01

Joint ci ratio: 3.644258e-02	ci left: 3.597671e-01	ci right 3.731718e-01	k: 7329	n:20000
Cons ci ratio: 5.375322e-02	ci left: 2.043726e-01	ci right 2.157119e-01	k: 4200	n:20000
KS ci ratio: 3.696224e-02	ci left: 3.532438e-01	ci right 3.665969e-01	k: 7198	n:20000
GTF3C4   20000 perm   4 sec   (5298 perm/sec)   p_kst 3.599000e-01   p_cons 2.100000e-01   p_joint 3.664500e-01

Outputting figure to mutsig2_images.part000000000075/GTF3C4.2_2489_20000_0.3599_0.21_0.36645.png
                gene_name: GTF3C4
               theta_stop: 0.054 
                    nperm: 20000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000075
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 75 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1416>
Subject: Job 8004141: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1416>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000076> was used as the working directory.
Started at Sun Nov 11 15:06:31 2012
Results reported at Sun Nov 11 15:20:34 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000076.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000076.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 76  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000076.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1010.19 sec.
    Max Memory :      4765 MB
    Max Swap   :      7110 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
76
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 76
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 76: processing genes 6786 - 6876
Calculating significance of each gene.
Using projection method.
6786	GTF3C5	8.843258e-01
6787	GTF3C6	1
6788	GTPBP1	7.203640e-01
6789	GTPBP10	1
6790	GTPBP2	1
6791	GTPBP3	1
6792	GTPBP4	3.751207e-02
6793	GTPBP5	1
6794	GTPBP8	6.434324e-01
6795	GTSE1	7.090107e-01
6796	GTSF1	1
6797	GTSF1L	1.986945e-01
6798	GUCA1A	3.290960e-01
6799	GUCA1B	1
6800	GUCA1C	5.452582e-01
6801	GUCA2A	1
6802	GUCA2B	1
6803	GUCY1A2	2.934021e-04
6804	GUCY1A3	8.663113e-01
6805	GUCY1B3	2.373024e-01
6806	GUCY2C	1
6807	GUCY2D	8.996728e-01
6808	GUCY2F	8.896660e-01
6809	GUF1	8.072460e-01
6810	GUK1	1.224174e-01
6811	GULP1	3.055908e-01
6812	GUSB	6.319733e-01
6813	GXYLT1	7.368769e-02
6814	GXYLT2	5.038498e-01
6815	GYG1	5.365703e-01
6816	GYG2	7.148147e-02
6817	GYLTL1B	6.783401e-01
6818	GYPA	1
6819	GYPB	1
6820	GYPC	1.815586e-01
6821	GYPE	1.520337e-01
6822	GYS1	8.589989e-01
6823	GYS2	1
6824	GZF1	4.535025e-01
6825	GZMA	1.466810e-02
6826	GZMB	6.758191e-01
6827	GZMH	1
6828	GZMK	1.763147e-01
6829	GZMM	1
6830	H1F0	1
6831	H1FNT	1.140521e-03
6832	H1FOO	7.820573e-02
6833	H1FX	1
6834	H2AFB1	1
6835	H2AFB3	1
6836	H2AFJ	1
6837	H2AFV	6.839902e-02
6838	H2AFX	4.596741e-01
6839	H2AFY	6.382168e-01
6840	H2AFY2	1
6841	H2AFZ	1.469048e-01
6842	H2BFWT	1.784948e-01
6843	H3F3A	3.481937e-01
6844	H3F3B	6.184580e-02
6845	H3F3C	2.702329e-01
6846	H6PD	1
6847	HAAO	1
6848	HABP2	7.427647e-01
6849	HABP4	1
6850	HACE1	1.214662e-01
6851	HACL1	1
6852	HADH	5.610250e-01
6853	HADHA	7.400070e-01
6854	HADHB	3.099448e-01
6855	HAGH	1
6856	HAGHL	4.279286e-01
6857	HAL	6.955553e-01
6858	HAMP	1
6859	HAND1	5.040437e-01
6860	HAND2	1.172398e-01
6861	HAO1	7.095427e-04
6862	HAO2	1
6863	HAP1	8.170341e-01
6864	HAPLN1	1.328517e-02
6865	HAPLN2	1
6866	HAPLN3	1
6867	HAPLN4	3.224878e-01
6868	HARBI1	1
6869	HARS	1
6870	HARS2	5.460828e-01
6871	HAS1	5.115708e-01
6872	HAS2	1
6873	HAS3	8.563769e-01
6874	HAT1	2.898348e-01
6875	HAUS1	4.944672e-01
6876	HAUS2	1
Done

Running MutSig 2:
Scatter job 76: processing genes 6786 - 6876
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
GUCY1A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.305359e-02	ci left: 5.746674e-01	ci right 5.940834e-01	k: 5844	n:10000
Cons ci ratio: 2.150889e-02	ci left: 7.602067e-01	ci right 7.768366e-01	k: 7686	n:10000
KS ci ratio: 4.687951e-02	ci left: 4.017322e-01	ci right 4.211194e-01	k: 4114	n:10000
GUCY1A2   10000 perm   3 sec   (3878 perm/sec)   p_kst 4.114000e-01   p_cons 7.686000e-01   p_joint 5.844000e-01

Outputting figure to mutsig2_images.part000000000076/GUCY1A2.12_2231_10000_0.4114_0.7686_0.5844.png
                gene_name: GUCY1A2
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 2 percent done.
GUCY1A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.394607e-02	ci left: 5.616310e-01	ci right 5.811274e-01	k: 5714	n:10000
Cons ci ratio: 7.419881e-02	ci left: 2.100392e-01	ci right 2.263253e-01	k: 2181	n:10000
KS ci ratio: 1.111089e-02	ci left: 9.203848e-01	ci right 9.307656e-01	k: 9257	n:10000
GUCY1A3   10000 perm   2 sec   (5667 perm/sec)   p_kst 9.257000e-01   p_cons 2.181000e-01   p_joint 5.714000e-01

Outputting figure to mutsig2_images.part000000000076/GUCY1A3.7_2124_10000_0.9257_0.2181_0.5714.png
                gene_name: GUCY1A3
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 5 percent done.
HAO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.146253e-01	ci left: 9.866755e-02	ci right 1.107638e-01	k: 1046	n:10000
Cons ci ratio: 2.619358e-02	ci left: 6.821411e-01	ci right 7.003474e-01	k: 6913	n:10000
KS ci ratio: 1.809983e-01	ci left: 4.073298e-02	ci right 4.893483e-02	k: 447	n:10000
HAO1   10000 perm   2 sec   (5151 perm/sec)   p_kst 4.470000e-02   p_cons 6.913000e-01   p_joint 1.046000e-01

Joint ci ratio: 6.717203e-02	ci left: 1.405907e-01	ci right 1.504126e-01	k: 2909	n:20000
Cons ci ratio: 1.865685e-02	ci left: 6.817281e-01	ci right 6.946172e-01	k: 13764	n:20000
KS ci ratio: 1.251624e-01	ci left: 4.381688e-02	ci right 4.971579e-02	k: 934	n:20000
HAO1   20000 perm   4 sec   (4501 perm/sec)   p_kst 4.670000e-02   p_cons 6.882000e-01   p_joint 1.454500e-01

Joint ci ratio: 5.576115e-02	ci left: 1.374754e-01	ci right 1.453942e-01	k: 4242	n:30000
Cons ci ratio: 1.521567e-02	ci left: 6.834257e-01	ci right 6.939377e-01	k: 20661	n:30000
KS ci ratio: 1.028316e-01	ci left: 4.381946e-02	ci right 4.860225e-02	k: 1385	n:30000
HAO1   30000 perm   7 sec   (4322 perm/sec)   p_kst 4.616667e-02   p_cons 6.887000e-01   p_joint 1.414000e-01

Joint ci ratio: 6.027543e-02	ci left: 9.273537e-02	ci right 9.852349e-02	k: 3824	n:40000
Cons ci ratio: 1.314727e-02	ci left: 6.851152e-01	ci right 6.942073e-01	k: 27587	n:40000
KS ci ratio: 8.808497e-02	ci left: 4.509327e-02	ci right 4.927278e-02	k: 1886	n:40000
HAO1   40000 perm   9 sec   (4224 perm/sec)   p_kst 4.715000e-02   p_cons 6.896750e-01   p_joint 9.560000e-02

Outputting figure to mutsig2_images.part000000000076/HAO1.7_1145_40000_0.04715_0.68968_0.0956.png
                gene_name: HAO1
               theta_stop: 0.088 
                    nperm: 40000 
                     p_ks: 0.047 
        ci_ks_bounds_left: 0.045 
       ci_ks_bounds_right: 0.049 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.096 
     ci_joint_bounds_left: 0.093 
    ci_joint_bounds_right: 0.099 

Current progress: 7 percent done.
GTPBP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.824936e-02	ci left: 5.023507e-01	ci right 5.220421e-01	k: 5122	n:10000
Cons ci ratio: 6.807679e-02	ci left: 2.404497e-01	ci right 2.574968e-01	k: 2489	n:10000
KS ci ratio: 2.734118e-02	ci left: 6.634040e-01	ci right 6.818953e-01	k: 6727	n:10000
GTPBP4   10000 perm   2 sec   (5410 perm/sec)   p_kst 6.727000e-01   p_cons 2.489000e-01   p_joint 5.122000e-01

Outputting figure to mutsig2_images.part000000000076/GTPBP4.6_1973_10000_0.6727_0.2489_0.5122.png
                gene_name: GTPBP4
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 9 percent done.
GUCY2F
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.234819e-02	ci left: 7.461435e-01	ci right 7.631079e-01	k: 7547	n:10000
KS ci ratio: 3.278897e-02	ci left: 5.785796e-01	ci right 5.979689e-01	k: 5883	n:10000
GUCY2F   10000 perm   2 sec   (4618 perm/sec)   p_kst 5.883000e-01   p_cons 7.547000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000076/GUCY2F.6_3399_10000_0.5883_0.7547_1.png
                gene_name: GUCY2F
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 12 percent done.
HACE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.673957e-02	ci left: 8.385712e-01	ci right 8.528268e-01	k: 8458	n:10000
Cons ci ratio: 2.854796e-02	ci left: 6.439792e-01	ci right 6.627314e-01	k: 6534	n:10000
KS ci ratio: 2.256539e-02	ci left: 7.425032e-01	ci right 7.595503e-01	k: 7511	n:10000
HACE1   10000 perm   2 sec   (4645 perm/sec)   p_kst 7.511000e-01   p_cons 6.534000e-01   p_joint 8.458000e-01

Outputting figure to mutsig2_images.part000000000076/HACE1.6_2826_10000_0.7511_0.6534_0.8458.png
                gene_name: HACE1
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 14 percent done.
GUCY2C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.918961e-02	ci left: 7.988215e-01	ci right 8.143995e-01	k: 8067	n:10000
KS ci ratio: 4.132906e-02	ci left: 4.636729e-01	ci right 4.833426e-01	k: 4735	n:10000
GUCY2C   10000 perm   2 sec   (4874 perm/sec)   p_kst 4.735000e-01   p_cons 8.067000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000076/GUCY2C.5_3330_10000_0.4735_0.8067_1.png
                gene_name: GUCY2C
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 16 percent done.
HAPLN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.981480e-02	ci left: 7.884733e-01	ci right 8.043536e-01	k: 7965	n:10000
Cons ci ratio: 4.354932e-02	ci left: 4.377208e-01	ci right 4.573098e-01	k: 4475	n:10000
KS ci ratio: 2.292136e-02	ci left: 7.365388e-01	ci right 7.537181e-01	k: 7452	n:10000
HAPLN1   10000 perm   2 sec   (5642 perm/sec)   p_kst 7.452000e-01   p_cons 4.475000e-01   p_joint 7.965000e-01

Outputting figure to mutsig2_images.part000000000076/HAPLN1.5_1081_10000_0.7452_0.4475_0.7965.png
                gene_name: HAPLN1
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 19 percent done.
GTSE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.746257e-03	ci left: 9.585892e-01	ci right 9.661384e-01	k: 9625	n:10000
KS ci ratio: 1.282242e-02	ci left: 8.974420e-01	ci right 9.091219e-01	k: 9034	n:10000
GTSE1   10000 perm   2 sec   (5793 perm/sec)   p_kst 9.034000e-01   p_cons 9.625000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000076/GTSE1.4_2264_10000_0.9034_0.9625_1.png
                gene_name: GTSE1
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 21 percent done.
GUCY1B3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.029581e-01	ci left: 1.200443e-01	ci right 1.331741e-01	k: 1265	n:10000
Cons ci ratio: 2.115267e-01	ci left: 2.968021e-02	ci right 3.679509e-02	k: 331	n:10000
KS ci ratio: 1.489128e-01	ci left: 5.995589e-02	ci right 6.969950e-02	k: 647	n:10000
GUCY1B3   10000 perm   2 sec   (5520 perm/sec)   p_kst 6.470000e-02   p_cons 3.310000e-02   p_joint 1.265000e-01

Joint ci ratio: 1.297411e-01	ci left: 4.081147e-02	ci right 4.652216e-02	k: 872	n:20000
Cons ci ratio: 1.477441e-01	ci left: 3.148306e-02	ci right 3.655359e-02	k: 679	n:20000
KS ci ratio: 1.070774e-01	ci left: 5.942775e-02	ci right 6.620004e-02	k: 1255	n:20000
GUCY1B3   20000 perm   4 sec   (4890 perm/sec)   p_kst 6.275000e-02   p_cons 3.395000e-02   p_joint 4.360000e-02

Joint ci ratio: 9.497382e-02	ci left: 5.117578e-02	ci right 5.631108e-02	k: 1611	n:30000
Cons ci ratio: 1.194267e-01	ci left: 3.259274e-02	ci right 3.676467e-02	k: 1039	n:30000
KS ci ratio: 8.607205e-02	ci left: 6.187661e-02	ci right 6.747473e-02	k: 1939	n:30000
GUCY1B3   30000 perm   7 sec   (4589 perm/sec)   p_kst 6.463333e-02   p_cons 3.463333e-02   p_joint 5.370000e-02

Joint ci ratio: 9.620696e-02	ci left: 3.792964e-02	ci right 4.178753e-02	k: 1593	n:40000
Cons ci ratio: 1.026877e-01	ci left: 3.334221e-02	ci right 3.697568e-02	k: 1405	n:40000
KS ci ratio: 7.498608e-02	ci left: 6.154699e-02	ci right 6.636655e-02	k: 2557	n:40000
GUCY1B3   40000 perm   9 sec   (4436 perm/sec)   p_kst 6.392500e-02   p_cons 3.512500e-02   p_joint 3.982500e-02

Joint ci ratio: 1.006912e-01	ci left: 2.793671e-02	ci right 3.091826e-02	k: 1470	n:50000
Cons ci ratio: 9.172521e-02	ci left: 3.362129e-02	ci right 3.687296e-02	k: 1761	n:50000
KS ci ratio: 6.768810e-02	ci left: 6.072832e-02	ci right 6.500260e-02	k: 3142	n:50000
GUCY1B3   50000 perm   12 sec   (4316 perm/sec)   p_kst 6.284000e-02   p_cons 3.522000e-02   p_joint 2.940000e-02

Joint ci ratio: 8.057495e-02	ci left: 3.641881e-02	ci right 3.949275e-02	k: 2276	n:60000
Cons ci ratio: 8.465911e-02	ci left: 3.303754e-02	ci right 3.597438e-02	k: 2069	n:60000
KS ci ratio: 6.173472e-02	ci left: 6.101949e-02	ci right 6.492292e-02	k: 3777	n:60000
GUCY1B3   60000 perm   14 sec   (4199 perm/sec)   p_kst 6.295000e-02   p_cons 3.448333e-02   p_joint 3.793333e-02

Outputting figure to mutsig2_images.part000000000076/GUCY1B3.4_1916_60000_0.06295_0.034483_0.037933.png
                gene_name: GUCY1B3
               theta_stop: 0.085 
                    nperm: 60000 
                     p_ks: 0.063 
        ci_ks_bounds_left: 0.061 
       ci_ks_bounds_right: 0.065 
                   p_cons: 0.034 
      ci_cons_bounds_left: 0.033 
     ci_cons_bounds_right: 0.036 
                  p_joint: 0.038 
     ci_joint_bounds_left: 0.036 
    ci_joint_bounds_right: 0.039 

Current progress: 23 percent done.
GYG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.314093e-02	ci left: 2.693338e-01	ci right 2.869956e-01	k: 2781	n:10000
Cons ci ratio: 2.964019e-02	ci left: 6.266822e-01	ci right 6.456384e-01	k: 6362	n:10000
KS ci ratio: 7.861921e-02	ci left: 1.912134e-01	ci right 2.069623e-01	k: 1990	n:10000
GYG2   10000 perm   2 sec   (6080 perm/sec)   p_kst 1.990000e-01   p_cons 6.362000e-01   p_joint 2.781000e-01

Outputting figure to mutsig2_images.part000000000076/GYG2.4_1550_10000_0.199_0.6362_0.2781.png
                gene_name: GYG2
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 26 percent done.
GYS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.945981e-02	ci left: 7.943566e-01	ci right 8.100670e-01	k: 8023	n:10000
KS ci ratio: 1.729419e-02	ci left: 8.297144e-01	ci right 8.442887e-01	k: 8371	n:10000
GYS2   10000 perm   2 sec   (5425 perm/sec)   p_kst 8.371000e-01   p_cons 8.023000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000076/GYS2.4_2176_10000_0.8371_0.8023_1.png
                gene_name: GYS2
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 28 percent done.
GZMA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.084238e-02	ci left: 6.079920e-01	ci right 6.271395e-01	k: 6176	n:10000
Cons ci ratio: 1.802429e-02	ci left: 8.179167e-01	ci right 8.328932e-01	k: 8255	n:10000
KS ci ratio: 3.860295e-02	ci left: 4.977503e-01	ci right 5.174453e-01	k: 5076	n:10000
GZMA   10000 perm   2 sec   (6342 perm/sec)   p_kst 5.076000e-01   p_cons 8.255000e-01   p_joint 6.176000e-01

Outputting figure to mutsig2_images.part000000000076/GZMA.4_809_10000_0.5076_0.8255_0.6176.png
                gene_name: GZMA
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 30 percent done.
H1FNT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.297599e-02	ci left: 8.952868e-01	ci right 9.070783e-01	k: 9013	n:10000
Cons ci ratio: 3.357336e-02	ci left: 5.670453e-01	ci right 5.865100e-01	k: 5768	n:10000
KS ci ratio: 2.855426e-02	ci left: 6.438786e-01	ci right 6.626321e-01	k: 6533	n:10000
H1FNT   10000 perm   2 sec   (6226 perm/sec)   p_kst 6.533000e-01   p_cons 5.768000e-01   p_joint 9.013000e-01

Outputting figure to mutsig2_images.part000000000076/H1FNT.4_772_10000_0.6533_0.5768_0.9013.png
                gene_name: H1FNT
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 33 percent done.
GXYLT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.349131e-02	ci left: 3.399509e-01	ci right 3.587369e-01	k: 3493	n:10000
Cons ci ratio: 1.101528e-01	ci left: 1.061753e-01	ci right 1.186515e-01	k: 1123	n:10000
KS ci ratio: 4.366397e-02	ci left: 4.364239e-01	ci right 4.560074e-01	k: 4462	n:10000
GXYLT1   10000 perm   2 sec   (6085 perm/sec)   p_kst 4.462000e-01   p_cons 1.123000e-01   p_joint 3.493000e-01

Joint ci ratio: 3.580381e-02	ci left: 3.679852e-01	ci right 3.814512e-01	k: 7494	n:20000
Cons ci ratio: 7.858209e-02	ci left: 1.062851e-01	ci right 1.150284e-01	k: 2212	n:20000
KS ci ratio: 3.071272e-02	ci left: 4.419397e-01	ci right 4.557752e-01	k: 8977	n:20000
GXYLT1   20000 perm   4 sec   (5194 perm/sec)   p_kst 4.488500e-01   p_cons 1.106000e-01   p_joint 3.747000e-01

Outputting figure to mutsig2_images.part000000000076/GXYLT1.3_1355_20000_0.44885_0.1106_0.3747.png
                gene_name: GXYLT1
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.38 

Current progress: 35 percent done.
GZF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.386991e-02	ci left: 3.367719e-01	ci right 3.555178e-01	k: 3461	n:10000
Cons ci ratio: 9.901113e-02	ci left: 1.287509e-01	ci right 1.422622e-01	k: 1354	n:10000
KS ci ratio: 3.329228e-02	ci left: 5.711569e-01	ci right 5.905960e-01	k: 5809	n:10000
GZF1   10000 perm   2 sec   (5817 perm/sec)   p_kst 5.809000e-01   p_cons 1.354000e-01   p_joint 3.461000e-01

Outputting figure to mutsig2_images.part000000000076/GZF1.3_2156_10000_0.5809_0.1354_0.3461.png
                gene_name: GZF1
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 37 percent done.
HADHB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.645266e-02	ci left: 5.263665e-01	ci right 5.460124e-01	k: 5362	n:10000
Cons ci ratio: 1.975368e-02	ci left: 7.894875e-01	ci right 8.053389e-01	k: 7975	n:10000
KS ci ratio: 5.041374e-02	ci left: 3.671899e-01	ci right 3.862820e-01	k: 3767	n:10000
HADHB   10000 perm   2 sec   (5553 perm/sec)   p_kst 3.767000e-01   p_cons 7.975000e-01   p_joint 5.362000e-01

Outputting figure to mutsig2_images.part000000000076/HADHB.3_1485_10000_0.3767_0.7975_0.5362.png
                gene_name: HADHB
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 40 percent done.
HAS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.045706e-01	ci left: 7.422760e-03	ci right 1.127121e-02	k: 92	n:10000
Cons ci ratio: 9.791669e-01	ci left: 8.397740e-04	ci right 2.472817e-03	k: 15	n:10000
KS ci ratio: 1.865137e-01	ci left: 3.834345e-02	ci right 4.632594e-02	k: 422	n:10000
HAS1   10000 perm   2 sec   (5564 perm/sec)   p_kst 4.220000e-02   p_cons 1.500000e-03   p_joint 9.200000e-03

Joint ci ratio: 5.651098e-01	ci left: 1.727187e-03	ci right 3.123791e-03	k: 47	n:20000
Cons ci ratio: 7.402732e-01	ci left: 8.898411e-04	ci right 1.963576e-03	k: 27	n:20000
KS ci ratio: 1.334607e-01	ci left: 3.858415e-02	ci right 4.415019e-02	k: 826	n:20000
HAS1   20000 perm   4 sec   (4891 perm/sec)   p_kst 4.130000e-02   p_cons 1.350000e-03   p_joint 2.350000e-03

Joint ci ratio: 2.663777e-01	ci left: 6.212330e-03	ci right 8.151619e-03	k: 214	n:30000
Cons ci ratio: 3.730653e-01	ci left: 2.984266e-03	ci right 4.381238e-03	k: 109	n:30000
KS ci ratio: 1.103469e-01	ci left: 3.813500e-02	ci right 4.262124e-02	k: 1210	n:30000
HAS1   30000 perm   6 sec   (4665 perm/sec)   p_kst 4.033333e-02   p_cons 3.633333e-03   p_joint 7.133333e-03

Joint ci ratio: 2.155539e-01	ci left: 7.315922e-03	ci right 9.106577e-03	k: 327	n:40000
Cons ci ratio: 3.331123e-01	ci left: 2.876268e-03	ci right 4.047646e-03	k: 137	n:40000
KS ci ratio: 9.709861e-02	ci left: 3.724591e-02	ci right 4.107136e-02	k: 1565	n:40000
HAS1   40000 perm   9 sec   (4496 perm/sec)   p_kst 3.912500e-02   p_cons 3.425000e-03   p_joint 8.175000e-03

Joint ci ratio: 2.131317e-01	ci left: 6.003702e-03	ci right 7.454459e-03	k: 335	n:50000
Cons ci ratio: 2.949577e-01	ci left: 3.001357e-03	ci right 4.057579e-03	k: 175	n:50000
KS ci ratio: 8.660638e-02	ci left: 3.765281e-02	ci right 4.108094e-02	k: 1967	n:50000
HAS1   50000 perm   11 sec   (4390 perm/sec)   p_kst 3.934000e-02   p_cons 3.500000e-03   p_joint 6.700000e-03

Joint ci ratio: 2.925548e-01	ci left: 2.547355e-03	ci right 3.435134e-03	k: 178	n:60000
Cons ci ratio: 2.767212e-01	ci left: 2.872454e-03	ci right 3.809937e-03	k: 199	n:60000
KS ci ratio: 7.689324e-02	ci left: 3.991803e-02	ci right 4.312651e-02	k: 2490	n:60000
HAS1   60000 perm   14 sec   (4275 perm/sec)   p_kst 4.150000e-02   p_cons 3.316667e-03   p_joint 2.966667e-03

Joint ci ratio: 2.774842e-01	ci left: 2.448732e-03	ci right 3.250503e-03	k: 198	n:70000
Cons ci ratio: 2.586150e-01	ci left: 2.848612e-03	ci right 3.707665e-03	k: 228	n:70000
KS ci ratio: 7.092457e-02	ci left: 4.032931e-02	ci right 4.330883e-02	k: 2926	n:70000
HAS1   70000 perm   17 sec   (4181 perm/sec)   p_kst 4.180000e-02   p_cons 3.257143e-03   p_joint 2.828571e-03

Joint ci ratio: 2.688681e-01	ci left: 2.293987e-03	ci right 3.017832e-03	k: 211	n:80000
Cons ci ratio: 2.394979e-01	ci left: 2.937944e-03	ci right 3.748734e-03	k: 266	n:80000
KS ci ratio: 6.627306e-02	ci left: 4.050968e-02	ci right 4.329867e-02	k: 3351	n:80000
HAS1   80000 perm   20 sec   (4069 perm/sec)   p_kst 4.188750e-02   p_cons 3.325000e-03   p_joint 2.637500e-03

Joint ci ratio: 2.542945e-01	ci left: 2.298677e-03	ci right 2.978457e-03	k: 236	n:90000
Cons ci ratio: 2.255657e-01	ci left: 2.967298e-03	ci right 3.731933e-03	k: 300	n:90000
KS ci ratio: 6.213118e-02	ci left: 4.103804e-02	ci right 4.368045e-02	k: 3811	n:90000
HAS1   90000 perm   23 sec   (3973 perm/sec)   p_kst 4.234444e-02   p_cons 3.333333e-03   p_joint 2.622222e-03

Joint ci ratio: 2.278932e-01	ci left: 2.613920e-03	ci right 3.295417e-03	k: 294	n:100000
Cons ci ratio: 2.138124e-01	ci left: 2.991874e-03	ci right 3.717404e-03	k: 334	n:100000
KS ci ratio: 5.907810e-02	ci left: 4.092279e-02	ci right 4.342385e-02	k: 4216	n:100000
HAS1   100000 perm   26 sec   (3908 perm/sec)   p_kst 4.216000e-02   p_cons 3.340000e-03   p_joint 2.940000e-03

Joint ci ratio: 1.895556e-01	ci left: 3.505610e-03	ci right 4.248198e-03	k: 425	n:110000
Cons ci ratio: 2.051227e-01	ci left: 2.969693e-03	ci right 3.656906e-03	k: 363	n:110000
KS ci ratio: 5.631421e-02	ci left: 4.100152e-02	ci right 4.338633e-02	k: 4640	n:110000
HAS1   110000 perm   29 sec   (3844 perm/sec)   p_kst 4.218182e-02   p_cons 3.300000e-03   p_joint 3.863636e-03

Joint ci ratio: 1.546587e-01	ci left: 4.913040e-03	ci right 5.744475e-03	k: 638	n:120000
Cons ci ratio: 1.956723e-01	ci left: 3.007178e-03	ci right 3.667185e-03	k: 399	n:120000
KS ci ratio: 5.374470e-02	ci left: 4.130796e-02	ci right 4.359755e-02	k: 5093	n:120000
HAS1   120000 perm   32 sec   (3783 perm/sec)   p_kst 4.244167e-02   p_cons 3.325000e-03   p_joint 5.316667e-03

Joint ci ratio: 1.573097e-01	ci left: 4.379784e-03	ci right 5.134876e-03	k: 617	n:130000
Cons ci ratio: 1.896125e-01	ci left: 2.966205e-03	ci right 3.594735e-03	k: 425	n:130000
KS ci ratio: 5.163870e-02	ci left: 4.134901e-02	ci right 4.354838e-02	k: 5517	n:130000
HAS1   130000 perm   35 sec   (3722 perm/sec)   p_kst 4.243846e-02   p_cons 3.269231e-03   p_joint 4.746154e-03

Joint ci ratio: 1.665164e-01	ci left: 3.614479e-03	ci right 4.277755e-03	k: 551	n:140000
Cons ci ratio: 1.816790e-01	ci left: 3.013159e-03	ci right 3.621985e-03	k: 463	n:140000
KS ci ratio: 4.978421e-02	ci left: 4.135041e-02	ci right 4.346859e-02	k: 5936	n:140000
HAS1   140000 perm   38 sec   (3658 perm/sec)   p_kst 4.240000e-02   p_cons 3.307143e-03   p_joint 3.935714e-03

Joint ci ratio: 1.261115e-01	ci left: 5.996223e-03	ci right 6.809700e-03	k: 959	n:150000
Cons ci ratio: 1.775259e-01	ci left: 2.952346e-03	ci right 3.533784e-03	k: 485	n:150000
KS ci ratio: 4.811220e-02	ci left: 4.135945e-02	ci right 4.340495e-02	k: 6356	n:150000
HAS1   150000 perm   42 sec   (3607 perm/sec)   p_kst 4.237333e-02   p_cons 3.233333e-03   p_joint 6.393333e-03

Joint ci ratio: 1.220470e-01	ci left: 6.015104e-03	ci right 6.802942e-03	k: 1024	n:160000
Cons ci ratio: 1.696702e-01	ci left: 3.042850e-03	ci right 3.612882e-03	k: 531	n:160000
KS ci ratio: 4.647291e-02	ci left: 4.158471e-02	ci right 4.356940e-02	k: 6811	n:160000
HAS1   160000 perm   45 sec   (3551 perm/sec)   p_kst 4.256875e-02   p_cons 3.318750e-03   p_joint 6.400000e-03

Joint ci ratio: 1.541763e-01	ci left: 3.496104e-03	ci right 4.085723e-03	k: 643	n:170000
Cons ci ratio: 1.627726e-01	ci left: 3.123205e-03	ci right 3.682178e-03	k: 577	n:170000
KS ci ratio: 4.518243e-02	ci left: 4.144120e-02	ci right 4.336268e-02	k: 7207	n:170000
HAS1   170000 perm   49 sec   (3482 perm/sec)   p_kst 4.239412e-02   p_cons 3.394118e-03   p_joint 3.782353e-03

Joint ci ratio: 1.507094e-01	ci left: 3.462181e-03	ci right 4.031764e-03	k: 673	n:180000
Cons ci ratio: 1.591022e-01	ci left: 3.093648e-03	ci right 3.633653e-03	k: 604	n:180000
KS ci ratio: 4.393349e-02	ci left: 4.142426e-02	ci right 4.329052e-02	k: 7623	n:180000
HAS1   180000 perm   53 sec   (3422 perm/sec)   p_kst 4.235000e-02   p_cons 3.355556e-03   p_joint 3.738889e-03

Joint ci ratio: 1.445086e-01	ci left: 3.579037e-03	ci right 4.141530e-03	k: 732	n:190000
Cons ci ratio: 1.543275e-01	ci left: 3.122986e-03	ci right 3.650240e-03	k: 642	n:190000
KS ci ratio: 4.296155e-02	ci left: 4.107637e-02	ci right 4.288500e-02	k: 7975	n:190000
HAS1   190000 perm   56 sec   (3367 perm/sec)   p_kst 4.197368e-02   p_cons 3.378947e-03   p_joint 3.852632e-03

Joint ci ratio: 1.257533e-01	ci left: 4.530848e-03	ci right 5.143639e-03	k: 966	n:200000
Cons ci ratio: 1.506257e-01	ci left: 3.120732e-03	ci right 3.633828e-03	k: 674	n:200000
KS ci ratio: 4.185239e-02	ci left: 4.113989e-02	ci right 4.290342e-02	k: 8403	n:200000
HAS1   200000 perm   60 sec   (3312 perm/sec)   p_kst 4.201500e-02   p_cons 3.370000e-03   p_joint 4.830000e-03

Joint ci ratio: 1.202685e-01	ci left: 4.730511e-03	ci right 5.340418e-03	k: 1056	n:210000
Cons ci ratio: 1.468657e-01	ci left: 3.132591e-03	ci right 3.633652e-03	k: 709	n:210000
KS ci ratio: 4.089749e-02	ci left: 4.105644e-02	ci right 4.277528e-02	k: 8801	n:210000
HAS1   210000 perm   64 sec   (3260 perm/sec)   p_kst 4.190952e-02   p_cons 3.376190e-03   p_joint 5.028571e-03

Joint ci ratio: 1.090766e-01	ci left: 5.517893e-03	ci right 6.158868e-03	k: 1283	n:220000
Cons ci ratio: 1.437618e-01	ci left: 3.125986e-03	ci right 3.614516e-03	k: 740	n:220000
KS ci ratio: 3.998241e-02	ci left: 4.102601e-02	ci right 4.270427e-02	k: 9209	n:220000
HAS1   220000 perm   68 sec   (3217 perm/sec)   p_kst 4.185909e-02   p_cons 3.363636e-03   p_joint 5.831818e-03

Joint ci ratio: 1.085814e-01	ci left: 5.328710e-03	ci right 5.944718e-03	k: 1295	n:230000
Cons ci ratio: 1.413065e-01	ci left: 3.099083e-03	ci right 3.574439e-03	k: 766	n:230000
KS ci ratio: 3.901409e-02	ci left: 4.122691e-02	ci right 4.287162e-02	k: 9670	n:230000
HAS1   230000 perm   73 sec   (3171 perm/sec)   p_kst 4.204348e-02   p_cons 3.330435e-03   p_joint 5.630435e-03

Joint ci ratio: 1.141753e-01	ci left: 4.608350e-03	ci right 5.170376e-03	k: 1172	n:240000
Cons ci ratio: 1.381883e-01	ci left: 3.110690e-03	ci right 3.576432e-03	k: 801	n:240000
KS ci ratio: 3.822920e-02	ci left: 4.116791e-02	ci right 4.277650e-02	k: 10072	n:240000
HAS1   240000 perm   77 sec   (3123 perm/sec)   p_kst 4.196667e-02   p_cons 3.337500e-03   p_joint 4.883333e-03

Joint ci ratio: 1.081041e-01	ci left: 4.949060e-03	ci right 5.518503e-03	k: 1307	n:250000
Cons ci ratio: 1.344642e-01	ci left: 3.160130e-03	ci right 3.619503e-03	k: 846	n:250000
KS ci ratio: 3.752164e-02	ci left: 4.104656e-02	ci right 4.262008e-02	k: 10457	n:250000
HAS1   250000 perm   81 sec   (3082 perm/sec)   p_kst 4.182800e-02   p_cons 3.384000e-03   p_joint 5.228000e-03

Joint ci ratio: 9.643239e-02	ci left: 6.010722e-03	ci right 6.623438e-03	k: 1641	n:260000
Cons ci ratio: 1.309521e-01	ci left: 3.209641e-03	ci right 3.663078e-03	k: 892	n:260000
KS ci ratio: 3.677592e-02	ci left: 4.109873e-02	ci right 4.264227e-02	k: 10885	n:260000
HAS1   260000 perm   86 sec   (3030 perm/sec)   p_kst 4.186538e-02   p_cons 3.430769e-03   p_joint 6.311538e-03

Joint ci ratio: 9.551180e-02	ci left: 5.903761e-03	ci right 6.499506e-03	k: 1673	n:270000
Cons ci ratio: 1.288775e-01	ci left: 3.194681e-03	ci right 3.638307e-03	k: 921	n:270000
KS ci ratio: 3.608628e-02	ci left: 4.111794e-02	ci right 4.263265e-02	k: 11305	n:270000
HAS1   270000 perm   90 sec   (2989 perm/sec)   p_kst 4.187037e-02   p_cons 3.411111e-03   p_joint 6.196296e-03

Joint ci ratio: 9.392694e-02	ci left: 5.891660e-03	ci right 6.475775e-03	k: 1730	n:280000
Cons ci ratio: 1.264324e-01	ci left: 3.205052e-03	ci right 3.641041e-03	k: 957	n:280000
KS ci ratio: 3.540097e-02	ci left: 4.121040e-02	ci right 4.269910e-02	k: 11746	n:280000
HAS1   280000 perm   95 sec   (2950 perm/sec)   p_kst 4.195000e-02   p_cons 3.417857e-03   p_joint 6.178571e-03

Joint ci ratio: 9.286368e-02	ci left: 5.823199e-03	ci right 6.393636e-03	k: 1770	n:290000
Cons ci ratio: 1.244358e-01	ci left: 3.198074e-03	ci right 3.625738e-03	k: 988	n:290000
KS ci ratio: 3.478456e-02	ci left: 4.122493e-02	ci right 4.268769e-02	k: 12166	n:290000
HAS1   290000 perm   100 sec   (2911 perm/sec)   p_kst 4.195172e-02   p_cons 3.406897e-03   p_joint 6.103448e-03

Joint ci ratio: 9.375594e-02	ci left: 5.521619e-03	ci right 6.067995e-03	k: 1737	n:300000
Cons ci ratio: 1.221112e-01	ci left: 3.214234e-03	ci right 3.635449e-03	k: 1026	n:300000
KS ci ratio: 3.420495e-02	ci left: 4.122547e-02	ci right 4.266340e-02	k: 12582	n:300000
HAS1   300000 perm   104 sec   (2873 perm/sec)   p_kst 4.194000e-02   p_cons 3.420000e-03   p_joint 5.790000e-03

Joint ci ratio: 9.290848e-02	ci left: 5.444308e-03	ci right 5.977899e-03	k: 1769	n:310000
Cons ci ratio: 1.197431e-01	ci left: 3.238809e-03	ci right 3.654430e-03	k: 1067	n:310000
KS ci ratio: 3.362773e-02	ci left: 4.128696e-02	ci right 4.270227e-02	k: 13017	n:310000
HAS1   310000 perm   109 sec   (2836 perm/sec)   p_kst 4.199032e-02   p_cons 3.441935e-03   p_joint 5.706452e-03

Joint ci ratio: 9.132211e-02	ci left: 5.463462e-03	ci right 5.989299e-03	k: 1831	n:320000
Cons ci ratio: 1.176140e-01	ci left: 3.255855e-03	ci right 3.665718e-03	k: 1106	n:320000
KS ci ratio: 3.308648e-02	ci left: 4.132620e-02	ci right 4.271961e-02	k: 13446	n:320000
HAS1   320000 perm   114 sec   (2799 perm/sec)   p_kst 4.201875e-02   p_cons 3.456250e-03   p_joint 5.721875e-03

Joint ci ratio: 8.995773e-02	ci left: 5.463753e-03	ci right 5.981348e-03	k: 1887	n:330000
Cons ci ratio: 1.160528e-01	ci left: 3.245444e-03	ci right 3.648202e-03	k: 1136	n:330000
KS ci ratio: 3.257055e-02	ci left: 4.136323e-02	ci right 4.273574e-02	k: 13875	n:330000
HAS1   330000 perm   119 sec   (2764 perm/sec)   p_kst 4.204545e-02   p_cons 3.442424e-03   p_joint 5.718182e-03

Joint ci ratio: 8.963178e-02	ci left: 5.343292e-03	ci right 5.847544e-03	k: 1901	n:340000
Cons ci ratio: 1.145522e-01	ci left: 3.235679e-03	ci right 3.631682e-03	k: 1166	n:340000
KS ci ratio: 3.210029e-02	ci left: 4.134279e-02	ci right 4.269445e-02	k: 14285	n:340000
HAS1   340000 perm   125 sec   (2729 perm/sec)   p_kst 4.201471e-02   p_cons 3.429412e-03   p_joint 5.591176e-03

Joint ci ratio: 7.726788e-02	ci left: 7.017831e-03	ci right 7.584658e-03	k: 2554	n:350000
Cons ci ratio: 1.130136e-01	ci left: 3.232057e-03	ci right 3.621950e-03	k: 1198	n:350000
KS ci ratio: 3.161615e-02	ci left: 4.140871e-02	ci right 4.274174e-02	k: 14725	n:350000
HAS1   350000 perm   130 sec   (2697 perm/sec)   p_kst 4.207143e-02   p_cons 3.422857e-03   p_joint 7.297143e-03

Joint ci ratio: 8.229013e-02	ci left: 6.006036e-03	ci right 6.524182e-03	k: 2254	n:360000
Cons ci ratio: 1.115809e-01	ci left: 3.225970e-03	ci right 3.609870e-03	k: 1229	n:360000
KS ci ratio: 3.131857e-02	ci left: 4.104930e-02	ci right 4.235809e-02	k: 15012	n:360000
HAS1   360000 perm   135 sec   (2663 perm/sec)   p_kst 4.170000e-02   p_cons 3.413889e-03   p_joint 6.261111e-03

Joint ci ratio: 7.911220e-02	ci left: 6.331016e-03	ci right 6.855135e-03	k: 2438	n:370000
Cons ci ratio: 1.102891e-01	ci left: 3.214984e-03	ci right 3.592859e-03	k: 1258	n:370000
KS ci ratio: 3.089561e-02	ci left: 4.105007e-02	ci right 4.234090e-02	k: 15426	n:370000
HAS1   370000 perm   141 sec   (2630 perm/sec)   p_kst 4.169189e-02   p_cons 3.400000e-03   p_joint 6.589189e-03

Joint ci ratio: 7.820458e-02	ci left: 6.311457e-03	ci right 6.827689e-03	k: 2495	n:380000
Cons ci ratio: 1.090836e-01	ci left: 3.202041e-03	ci right 3.574017e-03	k: 1286	n:380000
KS ci ratio: 3.050441e-02	ci left: 4.101173e-02	ci right 4.228474e-02	k: 15825	n:380000
HAS1   380000 perm   146 sec   (2602 perm/sec)   p_kst 4.164474e-02   p_cons 3.384211e-03   p_joint 6.565789e-03

Joint ci ratio: 7.541820e-02	ci left: 6.619943e-03	ci right 7.141270e-03	k: 2682	n:390000
Cons ci ratio: 1.075075e-01	ci left: 3.214735e-03	ci right 3.582448e-03	k: 1324	n:390000
KS ci ratio: 3.009192e-02	ci left: 4.106965e-02	ci right 4.232692e-02	k: 16261	n:390000
HAS1   390000 perm   152 sec   (2573 perm/sec)   p_kst 4.169487e-02   p_cons 3.394872e-03   p_joint 6.876923e-03

Joint ci ratio: 7.246523e-02	ci left: 6.999234e-03	ci right 7.527941e-03	k: 2904	n:400000
Cons ci ratio: 1.064690e-01	ci left: 3.197626e-03	ci right 3.559627e-03	k: 1350	n:400000
KS ci ratio: 2.971337e-02	ci left: 4.107761e-02	ci right 4.231904e-02	k: 16678	n:400000
HAS1   400000 perm   157 sec   (2544 perm/sec)   p_kst 4.169500e-02   p_cons 3.375000e-03   p_joint 7.260000e-03

Joint ci ratio: 7.998341e-02	ci left: 5.591355e-03	ci right 6.059573e-03	k: 2387	n:410000
Cons ci ratio: 1.050779e-01	ci left: 3.205117e-03	ci right 3.562933e-03	k: 1386	n:410000
KS ci ratio: 2.934875e-02	ci left: 4.108529e-02	ci right 4.231145e-02	k: 17095	n:410000
HAS1   410000 perm   163 sec   (2515 perm/sec)   p_kst 4.169512e-02   p_cons 3.380488e-03   p_joint 5.821951e-03

Joint ci ratio: 7.893214e-02	ci left: 5.607582e-03	ci right 6.070704e-03	k: 2451	n:420000
Cons ci ratio: 1.036304e-01	ci left: 3.219240e-03	ci right 3.573380e-03	k: 1425	n:420000
KS ci ratio: 2.899637e-02	ci left: 4.109504e-02	ci right 4.230653e-02	k: 17513	n:420000
HAS1   420000 perm   169 sec   (2488 perm/sec)   p_kst 4.169762e-02   p_cons 3.392857e-03   p_joint 5.835714e-03

Joint ci ratio: 7.787457e-02	ci left: 5.629935e-03	ci right 6.088390e-03	k: 2518	n:430000
Cons ci ratio: 1.024871e-01	ci left: 3.216874e-03	ci right 3.566615e-03	k: 1457	n:430000
KS ci ratio: 2.864139e-02	ci left: 4.114601e-02	ci right 4.234390e-02	k: 17949	n:430000
HAS1   430000 perm   175 sec   (2460 perm/sec)   p_kst 4.174186e-02   p_cons 3.388372e-03   p_joint 5.855814e-03

Joint ci ratio: 6.345042e-02	ci left: 8.327034e-03	ci right 8.874921e-03	k: 3783	n:440000
Cons ci ratio: 1.012106e-01	ci left: 3.225713e-03	ci right 3.571787e-03	k: 1494	n:440000
KS ci ratio: 2.831682e-02	ci left: 4.114508e-02	ci right 4.232915e-02	k: 18363	n:440000
HAS1   440000 perm   181 sec   (2433 perm/sec)   p_kst 4.173409e-02   p_cons 3.395455e-03   p_joint 8.597727e-03

Joint ci ratio: 6.331326e-02	ci left: 8.179148e-03	ci right 8.716098e-03	k: 3800	n:450000
Cons ci ratio: 9.991517e-02	ci left: 3.238518e-03	ci right 3.581258e-03	k: 1533	n:450000
KS ci ratio: 2.801705e-02	ci left: 4.110453e-02	ci right 4.227471e-02	k: 18759	n:450000
HAS1   450000 perm   187 sec   (2408 perm/sec)   p_kst 4.168667e-02   p_cons 3.406667e-03   p_joint 8.444444e-03

Outputting figure to mutsig2_images.part000000000076/HAS1.3_1757_450000_0.041687_0.0034067_0.0084444.png
                gene_name: HAS1
               theta_stop: 0.100 
                    nperm: 450000 
                     p_ks: 0.042 
        ci_ks_bounds_left: 0.041 
       ci_ks_bounds_right: 0.042 
                   p_cons: 0.0034 
      ci_cons_bounds_left: 0.0032 
     ci_cons_bounds_right: 0.0036 
                  p_joint: 0.0084 
     ci_joint_bounds_left: 0.0082 
    ci_joint_bounds_right: 0.0087 

Current progress: 42 percent done.
GTPBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.674677e-02	ci left: 5.223623e-01	ci right 5.420189e-01	k: 5322	n:10000
Cons ci ratio: 1.412556e-01	ci left: 6.642862e-02	ci right 7.662268e-02	k: 714	n:10000
KS ci ratio: 4.165368e-02	ci left: 4.597784e-01	ci right 4.794394e-01	k: 4696	n:10000
GTPBP1   10000 perm   2 sec   (6007 perm/sec)   p_kst 4.696000e-01   p_cons 7.140000e-02   p_joint 5.322000e-01

Joint ci ratio: 2.524599e-02	ci left: 5.396192e-01	ci right 5.534672e-01	k: 10931	n:20000
Cons ci ratio: 9.988490e-02	ci left: 6.791774e-02	ci right 7.510743e-02	k: 1429	n:20000
KS ci ratio: 2.946781e-02	ci left: 4.624633e-01	ci right 4.763456e-01	k: 9388	n:20000
GTPBP1   20000 perm   4 sec   (5230 perm/sec)   p_kst 4.694000e-01   p_cons 7.145000e-02   p_joint 5.465500e-01

Outputting figure to mutsig2_images.part000000000076/GTPBP1.2_2058_20000_0.4694_0.07145_0.54655.png
                gene_name: GTPBP1
               theta_stop: 0.100 
                    nperm: 20000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.071 
      ci_cons_bounds_left: 0.068 
     ci_cons_bounds_right: 0.075 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.55 

Current progress: 44 percent done.
GUCA1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.456111e-01	ci left: 1.050669e-02	ci right 1.498385e-02	k: 126	n:10000
Cons ci ratio: 9.623583e-02	ci left: 1.354096e-01	ci right 1.491994e-01	k: 1422	n:10000
KS ci ratio: 2.357589e-01	ci left: 2.372311e-02	ci right 3.015646e-02	k: 268	n:10000
GUCA1A   10000 perm   1 sec   (7117 perm/sec)   p_kst 2.680000e-02   p_cons 1.422000e-01   p_joint 1.260000e-02

Joint ci ratio: 1.178121e-01	ci left: 4.935201e-02	ci right 5.557892e-02	k: 1048	n:20000
Cons ci ratio: 6.791111e-02	ci left: 1.379290e-01	ci right 1.476751e-01	k: 2855	n:20000
KS ci ratio: 1.599623e-01	ci left: 2.681414e-02	ci right 3.152408e-02	k: 582	n:20000
GUCA1A   20000 perm   3 sec   (5891 perm/sec)   p_kst 2.910000e-02   p_cons 1.427500e-01   p_joint 5.240000e-02

Joint ci ratio: 1.749082e-01	ci left: 1.502500e-02	ci right 1.793639e-02	k: 493	n:30000
Cons ci ratio: 5.517185e-02	ci left: 1.400451e-01	ci right 1.480240e-01	k: 4320	n:30000
KS ci ratio: 1.299606e-01	ci left: 2.751748e-02	ci right 3.137436e-02	k: 882	n:30000
GUCA1A   30000 perm   5 sec   (5508 perm/sec)   p_kst 2.940000e-02   p_cons 1.440000e-01   p_joint 1.643333e-02

Joint ci ratio: 1.196670e-01	ci left: 2.455956e-02	ci right 2.770974e-02	k: 1044	n:40000
Cons ci ratio: 4.817341e-02	ci left: 1.385929e-01	ci right 1.454591e-01	k: 5680	n:40000
KS ci ratio: 1.121738e-01	ci left: 2.796083e-02	ci right 3.130791e-02	k: 1184	n:40000
GUCA1A   40000 perm   8 sec   (5302 perm/sec)   p_kst 2.960000e-02   p_cons 1.420000e-01   p_joint 2.610000e-02

Joint ci ratio: 6.861293e-02	ci left: 5.917356e-02	ci right 6.339756e-02	k: 3063	n:50000
Cons ci ratio: 4.312396e-02	ci left: 1.387532e-01	ci right 1.448885e-01	k: 7090	n:50000
KS ci ratio: 9.917321e-02	ci left: 2.879534e-02	ci right 3.181952e-02	k: 1514	n:50000
GUCA1A   50000 perm   10 sec   (5136 perm/sec)   p_kst 3.028000e-02   p_cons 1.418000e-01   p_joint 6.126000e-02

Outputting figure to mutsig2_images.part000000000076/GUCA1A.2_622_50000_0.03028_0.1418_0.06126.png
                gene_name: GUCA1A
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.030 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.061 
     ci_joint_bounds_left: 0.059 
    ci_joint_bounds_right: 0.063 

Current progress: 47 percent done.
GUCY2D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.405748e-02	ci left: 8.797106e-01	ci right 8.922635e-01	k: 8861	n:10000
Cons ci ratio: 8.847932e-03	ci left: 9.472103e-01	ci right 9.557242e-01	k: 9516	n:10000
KS ci ratio: 7.899090e-02	ci left: 1.897361e-01	ci right 2.054405e-01	k: 1975	n:10000
GUCY2D   10000 perm   2 sec   (4963 perm/sec)   p_kst 1.975000e-01   p_cons 9.516000e-01   p_joint 8.861000e-01

Outputting figure to mutsig2_images.part000000000076/GUCY2D.2_3384_10000_0.1975_0.9516_0.8861.png
                gene_name: GUCY2D
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 49 percent done.
GUK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.803364e-03	ci left: 9.827447e-01	ci right 9.875666e-01	k: 9853	n:10000
Cons ci ratio: 8.484586e-02	ci left: 1.683846e-01	ci right 1.834047e-01	k: 1758	n:10000
KS ci ratio: 3.865703e-02	ci left: 4.970503e-01	ci right 5.167457e-01	k: 5069	n:10000
GUK1   10000 perm   1 sec   (6676 perm/sec)   p_kst 5.069000e-01   p_cons 1.758000e-01   p_joint 9.853000e-01

Outputting figure to mutsig2_images.part000000000076/GUK1.2_689_10000_0.5069_0.1758_0.9853.png
                gene_name: GUK1
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 51 percent done.
GULP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.795794e-02	ci left: 6.534378e-01	ci right 6.720673e-01	k: 6628	n:10000
Cons ci ratio: 4.941957e-02	ci left: 3.765422e-01	ci right 3.957242e-01	k: 3861	n:10000
KS ci ratio: 7.764659e-02	ci left: 1.951537e-01	ci right 2.110196e-01	k: 2030	n:10000
GULP1   10000 perm   2 sec   (5877 perm/sec)   p_kst 2.030000e-01   p_cons 3.861000e-01   p_joint 6.628000e-01

Outputting figure to mutsig2_images.part000000000076/GULP1.2_955_10000_0.203_0.3861_0.6628.png
                gene_name: GULP1
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 53 percent done.
GUSB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.209850e-01	ci left: 8.922438e-02	ci right 1.008128e-01	k: 949	n:10000
Cons ci ratio: 1.341604e-02	ci left: 8.890312e-01	ci right 9.011376e-01	k: 8952	n:10000
KS ci ratio: 1.801579e-01	ci left: 4.111563e-02	ci right 4.935192e-02	k: 451	n:10000
GUSB   10000 perm   2 sec   (5722 perm/sec)   p_kst 4.510000e-02   p_cons 8.952000e-01   p_joint 9.490000e-02

Joint ci ratio: 3.834551e-02	ci left: 3.365685e-01	ci right 3.497772e-01	k: 6863	n:20000
Cons ci ratio: 9.409316e-03	ci left: 8.923992e-01	ci right 9.008851e-01	k: 17934	n:20000
KS ci ratio: 1.237799e-01	ci left: 4.478715e-02	ci right 5.074522e-02	k: 954	n:20000
GUSB   20000 perm   4 sec   (4959 perm/sec)   p_kst 4.770000e-02   p_cons 8.967000e-01   p_joint 3.431500e-01

Joint ci ratio: 3.153248e-02	ci left: 3.346054e-01	ci right 3.453589e-01	k: 10199	n:30000
Cons ci ratio: 8.061148e-03	ci left: 8.838026e-01	ci right 8.909889e-01	k: 26623	n:30000
KS ci ratio: 1.003877e-01	ci left: 4.593359e-02	ci right 5.082101e-02	k: 1450	n:30000
GUSB   30000 perm   6 sec   (4733 perm/sec)   p_kst 4.833333e-02   p_cons 8.874333e-01   p_joint 3.399667e-01

Joint ci ratio: 2.718668e-02	ci left: 3.373254e-01	ci right 3.466476e-01	k: 13679	n:40000
Cons ci ratio: 6.990915e-03	ci left: 8.840086e-01	ci right 8.902351e-01	k: 35486	n:40000
KS ci ratio: 8.716774e-02	ci left: 4.602343e-02	ci right 5.024248e-02	k: 1924	n:40000
GUSB   40000 perm   9 sec   (4597 perm/sec)   p_kst 4.810000e-02   p_cons 8.871500e-01   p_joint 3.419750e-01

Outputting figure to mutsig2_images.part000000000076/GUSB.2_2004_40000_0.0481_0.88715_0.34197.png
                gene_name: GUSB
               theta_stop: 0.087 
                    nperm: 40000 
                     p_ks: 0.048 
        ci_ks_bounds_left: 0.046 
       ci_ks_bounds_right: 0.050 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 56 percent done.
GXYLT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.694906e-02	ci left: 2.466773e-01	ci right 2.638654e-01	k: 2552	n:10000
KS ci ratio: 2.292136e-02	ci left: 7.365388e-01	ci right 7.537181e-01	k: 7452	n:10000
GXYLT2   10000 perm   2 sec   (6351 perm/sec)   p_kst 7.452000e-01   p_cons 2.552000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000076/GXYLT2.2_1360_10000_0.7452_0.2552_1.png
                gene_name: GXYLT2
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 58 percent done.
GYLTL1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.238931e+00	ci left: 4.116173e-04	ci right 1.707790e-03	k: 9	n:10000
Cons ci ratio: 1.607861e-01	ci left: 5.157346e-02	ci right 6.068728e-02	k: 560	n:10000
KS ci ratio: 2.723101e-01	ci left: 1.753307e-02	ci right 2.315124e-02	k: 202	n:10000
GYLTL1B   10000 perm   2 sec   (5974 perm/sec)   p_kst 2.020000e-02   p_cons 5.600000e-02   p_joint 9.000000e-04

Joint ci ratio: 1.792614e-01	ci left: 2.125382e-02	ci right 2.548631e-02	k: 466	n:20000
Cons ci ratio: 1.136954e-01	ci left: 5.290189e-02	ci right 5.932793e-02	k: 1121	n:20000
KS ci ratio: 1.927994e-01	ci left: 1.829524e-02	ci right 2.224596e-02	k: 404	n:20000
GYLTL1B   20000 perm   4 sec   (5107 perm/sec)   p_kst 2.020000e-02   p_cons 5.605000e-02   p_joint 2.330000e-02

Joint ci ratio: 2.645252e-01	ci left: 6.305714e-03	ci right 8.258200e-03	k: 217	n:30000
Cons ci ratio: 9.202437e-02	ci left: 5.440283e-02	ci right 5.968336e-02	k: 1710	n:30000
KS ci ratio: 1.582878e-01	ci left: 1.844573e-02	ci right 2.164817e-02	k: 600	n:30000
GYLTL1B   30000 perm   6 sec   (4832 perm/sec)   p_kst 2.000000e-02   p_cons 5.700000e-02   p_joint 7.233333e-03

Joint ci ratio: 6.273885e-01	ci left: 6.723615e-04	ci right 1.303718e-03	k: 38	n:40000
Cons ci ratio: 8.013122e-02	ci left: 5.418355e-02	ci right 5.873111e-02	k: 2257	n:40000
KS ci ratio: 1.364174e-01	ci left: 1.884374e-02	ci right 2.162653e-02	k: 808	n:40000
GYLTL1B   40000 perm   9 sec   (4650 perm/sec)   p_kst 2.020000e-02   p_cons 5.642500e-02   p_joint 9.500000e-04

Joint ci ratio: 5.486243e-01	ci left: 7.423075e-04	ci right 1.318165e-03	k: 50	n:50000
Cons ci ratio: 7.155758e-02	ci left: 5.459035e-02	ci right 5.866132e-02	k: 2830	n:50000
KS ci ratio: 1.219696e-01	ci left: 1.900419e-02	ci right 2.149195e-02	k: 1011	n:50000
GYLTL1B   50000 perm   11 sec   (4514 perm/sec)   p_kst 2.022000e-02   p_cons 5.660000e-02   p_joint 1.000000e-03

Joint ci ratio: 4.936101e-01	ci left: 7.923397e-04	ci right 1.324494e-03	k: 62	n:60000
Cons ci ratio: 6.525373e-02	ci left: 5.487905e-02	ci right 5.859730e-02	k: 3403	n:60000
KS ci ratio: 1.122134e-01	ci left: 1.881368e-02	ci right 2.106643e-02	k: 1195	n:60000
GYLTL1B   60000 perm   14 sec   (4399 perm/sec)   p_kst 1.991667e-02   p_cons 5.671667e-02   p_joint 1.033333e-03

Joint ci ratio: 4.494075e-01	ci left: 8.428369e-04	ci right 1.342863e-03	k: 75	n:70000
Cons ci ratio: 6.039179e-02	ci left: 5.505436e-02	ci right 5.849678e-02	k: 3973	n:70000
KS ci ratio: 1.039402e-01	ci left: 1.887822e-02	ci right 2.096184e-02	k: 1393	n:70000
GYLTL1B   70000 perm   16 sec   (4293 perm/sec)   p_kst 1.990000e-02   p_cons 5.675714e-02   p_joint 1.071429e-03

Joint ci ratio: 4.176409e-01	ci left: 8.711318e-04	ci right 1.341257e-03	k: 87	n:80000
Cons ci ratio: 5.650269e-02	ci left: 5.514427e-02	ci right 5.836297e-02	k: 4539	n:80000
KS ci ratio: 9.689096e-02	ci left: 1.907766e-02	ci right 2.103236e-02	k: 1603	n:80000
GYLTL1B   80000 perm   19 sec   (4210 perm/sec)   p_kst 2.003750e-02   p_cons 5.673750e-02   p_joint 1.087500e-03

Joint ci ratio: 3.917800e-01	ci left: 8.941129e-04	ci right 1.339050e-03	k: 99	n:90000
Cons ci ratio: 5.326852e-02	ci left: 5.524171e-02	ci right 5.827583e-02	k: 5107	n:90000
KS ci ratio: 9.159608e-02	ci left: 1.903012e-02	ci right 2.086767e-02	k: 1794	n:90000
GYLTL1B   90000 perm   22 sec   (4118 perm/sec)   p_kst 1.993333e-02   p_cons 5.674444e-02   p_joint 1.100000e-03

Joint ci ratio: 3.769966e-01	ci left: 8.769711e-04	ci right 1.292841e-03	k: 107	n:100000
Cons ci ratio: 5.054705e-02	ci left: 5.529424e-02	ci right 5.817153e-02	k: 5672	n:100000
KS ci ratio: 8.657393e-02	ci left: 1.921953e-02	ci right 2.096846e-02	k: 2008	n:100000
GYLTL1B   100000 perm   25 sec   (4015 perm/sec)   p_kst 2.008000e-02   p_cons 5.672000e-02   p_joint 1.070000e-03

Joint ci ratio: 3.532552e-01	ci left: 9.211154e-04	ci right 1.324114e-03	k: 122	n:110000
Cons ci ratio: 4.828215e-02	ci left: 5.516971e-02	ci right 5.790828e-02	k: 6218	n:110000
KS ci ratio: 8.244800e-02	ci left: 1.930549e-02	ci right 2.097449e-02	k: 2214	n:110000
GYLTL1B   110000 perm   28 sec   (3926 perm/sec)   p_kst 2.012727e-02   p_cons 5.652727e-02   p_joint 1.109091e-03

Joint ci ratio: 3.410031e-01	ci left: 9.128180e-04	ci right 1.295284e-03	k: 131	n:120000
Cons ci ratio: 4.612357e-02	ci left: 5.546400e-02	ci right 5.809080e-02	k: 6812	n:120000
KS ci ratio: 7.874470e-02	ci left: 1.943598e-02	ci right 2.103732e-02	k: 2427	n:120000
GYLTL1B   120000 perm   31 sec   (3838 perm/sec)   p_kst 2.022500e-02   p_cons 5.676667e-02   p_joint 1.091667e-03

Joint ci ratio: 3.276253e-01	ci left: 9.201174e-04	ci right 1.287336e-03	k: 142	n:130000
Cons ci ratio: 4.425930e-02	ci left: 5.564680e-02	ci right 5.817301e-02	k: 7397	n:130000
KS ci ratio: 7.583715e-02	ci left: 1.937417e-02	ci right 2.090888e-02	k: 2617	n:130000
GYLTL1B   130000 perm   35 sec   (3756 perm/sec)   p_kst 2.013077e-02   p_cons 5.690000e-02   p_joint 1.092308e-03

Joint ci ratio: 3.146865e-01	ci left: 9.332034e-04	ci right 1.287981e-03	k: 154	n:140000
Cons ci ratio: 4.277494e-02	ci left: 5.538105e-02	ci right 5.780879e-02	k: 7922	n:140000
KS ci ratio: 7.304396e-02	ci left: 1.942034e-02	ci right 2.089963e-02	k: 2821	n:140000
GYLTL1B   140000 perm   38 sec   (3689 perm/sec)   p_kst 2.015000e-02   p_cons 5.658571e-02   p_joint 1.100000e-03

Joint ci ratio: 2.928187e-01	ci left: 1.018819e-03	ci right 1.374247e-03	k: 178	n:150000
Cons ci ratio: 4.137086e-02	ci left: 5.530382e-02	ci right 5.764669e-02	k: 8470	n:150000
KS ci ratio: 7.041962e-02	ci left: 1.952676e-02	ci right 2.095853e-02	k: 3035	n:150000
GYLTL1B   150000 perm   41 sec   (3621 perm/sec)   p_kst 2.023333e-02   p_cons 5.646667e-02   p_joint 1.186667e-03

Joint ci ratio: 2.834710e-01	ci left: 1.024724e-03	ci right 1.368761e-03	k: 190	n:160000
Cons ci ratio: 4.012011e-02	ci left: 5.517549e-02	ci right 5.744062e-02	k: 9008	n:160000
KS ci ratio: 6.822007e-02	ci left: 1.952853e-02	ci right 2.091393e-02	k: 3234	n:160000
GYLTL1B   160000 perm   45 sec   (3562 perm/sec)   p_kst 2.021250e-02   p_cons 5.630000e-02   p_joint 1.187500e-03

Joint ci ratio: 2.763312e-01	ci left: 1.019141e-03	ci right 1.351188e-03	k: 200	n:170000
Cons ci ratio: 3.889869e-02	ci left: 5.527304e-02	ci right 5.747153e-02	k: 9582	n:170000
KS ci ratio: 6.603812e-02	ci left: 1.963487e-02	ci right 2.098156e-02	k: 3451	n:170000
GYLTL1B   170000 perm   49 sec   (3490 perm/sec)   p_kst 2.030000e-02   p_cons 5.636471e-02   p_joint 1.176471e-03

Joint ci ratio: 2.709939e-01	ci left: 1.003916e-03	ci right 1.323610e-03	k: 208	n:180000
Cons ci ratio: 3.785556e-02	ci left: 5.515695e-02	ci right 5.729071e-02	k: 10119	n:180000
KS ci ratio: 6.428585e-02	ci left: 1.958785e-02	ci right 2.089433e-02	k: 3642	n:180000
GYLTL1B   180000 perm   53 sec   (3428 perm/sec)   p_kst 2.023333e-02   p_cons 5.621667e-02   p_joint 1.155556e-03

Joint ci ratio: 2.647357e-01	ci left: 1.000176e-03	ci right 1.310104e-03	k: 218	n:190000
Cons ci ratio: 3.675524e-02	ci left: 5.544510e-02	ci right 5.752635e-02	k: 10731	n:190000
KS ci ratio: 6.253301e-02	ci left: 1.962912e-02	ci right 2.090136e-02	k: 3849	n:190000
GYLTL1B   190000 perm   56 sec   (3368 perm/sec)   p_kst 2.025789e-02   p_cons 5.647895e-02   p_joint 1.147368e-03

Joint ci ratio: 2.583278e-01	ci left: 1.001562e-03	ci right 1.303196e-03	k: 229	n:200000
Cons ci ratio: 3.583777e-02	ci left: 5.543256e-02	ci right 5.746032e-02	k: 11288	n:200000
KS ci ratio: 6.109314e-02	ci left: 1.955342e-02	ci right 2.079054e-02	k: 4033	n:200000
GYLTL1B   200000 perm   60 sec   (3312 perm/sec)   p_kst 2.016500e-02   p_cons 5.644000e-02   p_joint 1.145000e-03

Joint ci ratio: 2.534188e-01	ci left: 9.939772e-04	ci right 1.286740e-03	k: 238	n:210000
Cons ci ratio: 3.503592e-02	ci left: 5.527067e-02	ci right 5.724636e-02	k: 11813	n:210000
KS ci ratio: 5.971945e-02	ci left: 1.950401e-02	ci right 2.070929e-02	k: 4221	n:210000
GYLTL1B   210000 perm   64 sec   (3266 perm/sec)   p_kst 2.010000e-02   p_cons 5.625238e-02   p_joint 1.133333e-03

Joint ci ratio: 2.497897e-01	ci left: 9.786074e-04	ci right 1.262073e-03	k: 245	n:220000
Cons ci ratio: 3.421366e-02	ci left: 5.534491e-02	ci right 5.727590e-02	k: 12387	n:220000
KS ci ratio: 5.838041e-02	ci left: 1.949521e-02	ci right 2.067203e-02	k: 4417	n:220000
GYLTL1B   220000 perm   68 sec   (3218 perm/sec)   p_kst 2.007727e-02   p_cons 5.630455e-02   p_joint 1.113636e-03

Joint ci ratio: 2.468009e-01	ci left: 9.605219e-04	ci right 1.234909e-03	k: 251	n:230000
Cons ci ratio: 3.342757e-02	ci left: 5.547357e-02	ci right 5.736372e-02	k: 12975	n:230000
KS ci ratio: 5.720355e-02	ci left: 1.943601e-02	ci right 2.058482e-02	k: 4601	n:230000
GYLTL1B   230000 perm   73 sec   (3171 perm/sec)   p_kst 2.000435e-02   p_cons 5.641304e-02   p_joint 1.091304e-03

Joint ci ratio: 2.420457e-01	ci left: 9.596150e-04	ci right 1.227668e-03	k: 261	n:240000
Cons ci ratio: 3.270734e-02	ci left: 5.554649e-02	ci right 5.739758e-02	k: 13552	n:240000
KS ci ratio: 5.595805e-02	ci left: 1.947649e-02	ci right 2.060181e-02	k: 4808	n:240000
GYLTL1B   240000 perm   77 sec   (3124 perm/sec)   p_kst 2.003333e-02   p_cons 5.646667e-02   p_joint 1.087500e-03

Joint ci ratio: 2.345528e-01	ci left: 9.851729e-04	ci right 1.250611e-03	k: 278	n:250000
Cons ci ratio: 3.199456e-02	ci left: 5.573704e-02	ci right 5.755326e-02	k: 14160	n:250000
KS ci ratio: 5.483515e-02	ci left: 1.948240e-02	ci right 2.058476e-02	k: 5007	n:250000
GYLTL1B   250000 perm   81 sec   (3077 perm/sec)   p_kst 2.002800e-02   p_cons 5.664000e-02   p_joint 1.112000e-03

Joint ci ratio: 2.281013e-01	ci left: 1.005256e-03	ci right 1.267607e-03	k: 294	n:260000
Cons ci ratio: 3.137262e-02	ci left: 5.575680e-02	ci right 5.753771e-02	k: 14727	n:260000
KS ci ratio: 5.369837e-02	ci left: 1.954500e-02	ci right 2.062727e-02	k: 5221	n:260000
GYLTL1B   260000 perm   86 sec   (3037 perm/sec)   p_kst 2.008077e-02   p_cons 5.664231e-02   p_joint 1.130769e-03

Joint ci ratio: 2.243313e-01	ci left: 1.002962e-03	ci right 1.259791e-03	k: 304	n:270000
Cons ci ratio: 3.078239e-02	ci left: 5.578645e-02	ci right 5.753419e-02	k: 15297	n:270000
KS ci ratio: 5.279823e-02	ci left: 1.947889e-02	ci right 2.053886e-02	k: 5401	n:270000
GYLTL1B   270000 perm   90 sec   (3000 perm/sec)   p_kst 2.000370e-02   p_cons 5.665556e-02   p_joint 1.125926e-03

Joint ci ratio: 2.221589e-01	ci left: 9.873716e-04	ci right 1.237425e-03	k: 310	n:280000
Cons ci ratio: 3.025257e-02	ci left: 5.571499e-02	ci right 5.742992e-02	k: 15839	n:280000
KS ci ratio: 5.198942e-02	ci left: 1.938238e-02	ci right 2.042045e-02	k: 5571	n:280000
GYLTL1B   280000 perm   95 sec   (2961 perm/sec)   p_kst 1.989643e-02   p_cons 5.656786e-02   p_joint 1.107143e-03

Joint ci ratio: 2.183314e-01	ci left: 9.891631e-04	ci right 1.234775e-03	k: 321	n:290000
Cons ci ratio: 2.972805e-02	ci left: 5.572403e-02	ci right 5.740899e-02	k: 16403	n:290000
KS ci ratio: 5.107165e-02	ci left: 1.940160e-02	ci right 2.042182e-02	k: 5773	n:290000
GYLTL1B   290000 perm   99 sec   (2925 perm/sec)   p_kst 1.990690e-02   p_cons 5.656207e-02   p_joint 1.106897e-03

Joint ci ratio: 5.023514e-02	ci left: 1.939335e-02	ci right 2.039595e-02	k: 5967	n:300000
Cons ci ratio: 2.922259e-02	ci left: 5.575919e-02	ci right 5.741606e-02	k: 16975	n:300000
KS ci ratio: 5.023514e-02	ci left: 1.939335e-02	ci right 2.039595e-02	k: 5967	n:300000
GYLTL1B   300000 perm   104 sec   (2889 perm/sec)   p_kst 1.989000e-02   p_cons 5.658333e-02   p_joint 1.989000e-02

Outputting figure to mutsig2_images.part000000000076/GYLTL1B.2_2218_300000_0.01989_0.056583_0.01989.png
                gene_name: GYLTL1B
               theta_stop: 0.050 
                    nperm: 300000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.020 
                   p_cons: 0.057 
      ci_cons_bounds_left: 0.056 
     ci_cons_bounds_right: 0.057 
                  p_joint: 0.020 
     ci_joint_bounds_left: 0.019 
    ci_joint_bounds_right: 0.020 

Current progress: 60 percent done.
GZMK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.268081e-02	ci left: 5.801849e-01	ci right 5.995628e-01	k: 5899	n:10000
KS ci ratio: 5.645451e-02	ci left: 3.160206e-01	ci right 3.344813e-01	k: 3252	n:10000
GZMK   10000 perm   1 sec   (6931 perm/sec)   p_kst 3.252000e-01   p_cons 5.899000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000076/GZMK.2_815_10000_0.3252_0.5899_1.png
                gene_name: GZMK
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 63 percent done.
H1FOO
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.506812e-02	ci left: 5.455956e-01	ci right 5.651722e-01	k: 5554	n:10000
Cons ci ratio: 4.167877e-02	ci left: 4.594788e-01	ci right 4.791391e-01	k: 4693	n:10000
KS ci ratio: 2.383317e-02	ci left: 7.212834e-01	ci right 7.387824e-01	k: 7301	n:10000
H1FOO   10000 perm   2 sec   (6649 perm/sec)   p_kst 7.301000e-01   p_cons 4.693000e-01   p_joint 5.554000e-01

Outputting figure to mutsig2_images.part000000000076/H1FOO.2_1061_10000_0.7301_0.4693_0.5554.png
                gene_name: H1FOO
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 65 percent done.
H2AFV
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.764019e-02	ci left: 1.319816e-01	ci right 1.456295e-01	k: 1387	n:10000
Cons ci ratio: 5.794040e-02	ci left: 3.048095e-01	ci right 3.230990e-01	k: 3139	n:10000
KS ci ratio: 8.821285e-02	ci left: 1.575769e-01	ci right 1.722188e-01	k: 1648	n:10000
H2AFV   10000 perm   1 sec   (7703 perm/sec)   p_kst 1.648000e-01   p_cons 3.139000e-01   p_joint 1.387000e-01

Outputting figure to mutsig2_images.part000000000076/H2AFV.2_431_10000_0.1648_0.3139_0.1387.png
                gene_name: H2AFV
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.15 

Current progress: 67 percent done.
H2BFWT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.579547e-02	ci left: 6.886930e-01	ci right 7.067917e-01	k: 6978	n:10000
Cons ci ratio: 4.463999e-02	ci left: 4.255526e-01	ci right 4.450851e-01	k: 4353	n:10000
KS ci ratio: 2.700660e-02	ci left: 6.688421e-01	ci right 6.872541e-01	k: 6781	n:10000
H2BFWT   10000 perm   1 sec   (6925 perm/sec)   p_kst 6.781000e-01   p_cons 4.353000e-01   p_joint 6.978000e-01

Outputting figure to mutsig2_images.part000000000076/H2BFWT.2_536_10000_0.6781_0.4353_0.6978.png
                gene_name: H2BFWT
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 70 percent done.
H3F3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.822979e-03	ci left: 9.754639e-01	ci right 9.812528e-01	k: 9785	n:10000
KS ci ratio: 1.184452e-02	ci left: 9.108030e-01	ci right 9.217531e-01	k: 9164	n:10000
H3F3B   10000 perm   1 sec   (7661 perm/sec)   p_kst 9.164000e-01   p_cons 9.785000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000076/H3F3B.2_423_10000_0.9164_0.9785_1.png
                gene_name: H3F3B
               theta_stop: 0.012 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
H3F3C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.318628e-02	ci left: 8.923120e-01	ci right 9.042548e-01	k: 8984	n:10000
Cons ci ratio: 2.635936e-02	ci left: 6.794201e-01	ci right 6.976699e-01	k: 6886	n:10000
KS ci ratio: 2.734118e-02	ci left: 6.634040e-01	ci right 6.818953e-01	k: 6727	n:10000
H3F3C   10000 perm   1 sec   (7186 perm/sec)   p_kst 6.727000e-01   p_cons 6.886000e-01   p_joint 8.984000e-01

Outputting figure to mutsig2_images.part000000000076/H3F3C.2_412_10000_0.6727_0.6886_0.8984.png
                gene_name: H3F3C
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 74 percent done.
H6PD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.578567e-02	ci left: 8.535544e-01	ci right 8.672349e-01	k: 8605	n:10000
Cons ci ratio: 2.248696e-02	ci left: 7.438177e-01	ci right 7.608351e-01	k: 7524	n:10000
KS ci ratio: 3.579820e-02	ci left: 5.353783e-01	ci right 5.549953e-01	k: 5452	n:10000
H6PD   10000 perm   2 sec   (5519 perm/sec)   p_kst 5.452000e-01   p_cons 7.524000e-01   p_joint 8.605000e-01

Outputting figure to mutsig2_images.part000000000076/H6PD.2_2392_10000_0.5452_0.7524_0.8605.png
                gene_name: H6PD
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 77 percent done.
HABP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.880677e-02	ci left: 6.398548e-01	ci right 6.586581e-01	k: 6493	n:10000
Cons ci ratio: 4.253351e-02	ci left: 4.493959e-01	ci right 4.690278e-01	k: 4592	n:10000
KS ci ratio: 1.070647e-01	ci left: 1.118366e-01	ci right 1.245868e-01	k: 1181	n:10000
HABP2   10000 perm   2 sec   (5726 perm/sec)   p_kst 1.181000e-01   p_cons 4.592000e-01   p_joint 6.493000e-01

Joint ci ratio: 5.372893e-02	ci left: 2.045211e-01	ci right 2.158633e-01	k: 4203	n:20000
Cons ci ratio: 2.975030e-02	ci left: 4.577184e-01	ci right 4.715919e-01	k: 9293	n:20000
KS ci ratio: 7.558075e-02	ci left: 1.140515e-01	ci right 1.230598e-01	k: 2370	n:20000
HABP2   20000 perm   4 sec   (4984 perm/sec)   p_kst 1.185000e-01   p_cons 4.646500e-01   p_joint 2.101500e-01

Outputting figure to mutsig2_images.part000000000076/HABP2.2_1735_20000_0.1185_0.46465_0.21015.png
                gene_name: HABP2
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 79 percent done.
HADHA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.279304e-02	ci left: 8.978526e-01	ci right 9.095111e-01	k: 9038	n:10000
KS ci ratio: 2.284292e-02	ci left: 7.378529e-01	ci right 7.550034e-01	k: 7465	n:10000
HADHA   10000 perm   2 sec   (5635 perm/sec)   p_kst 7.465000e-01   p_cons 9.038000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000076/HADHA.2_2372_10000_0.7465_0.9038_1.png
                gene_name: HADHA
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
HAL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.251226e-02	ci left: 5.826932e-01	ci right 6.020529e-01	k: 5924	n:10000
Cons ci ratio: 4.141202e-02	ci left: 4.626742e-01	ci right 4.823418e-01	k: 4725	n:10000
KS ci ratio: 3.885856e-02	ci left: 4.944505e-01	ci right 5.141470e-01	k: 5043	n:10000
HAL   10000 perm   2 sec   (6332 perm/sec)   p_kst 5.043000e-01   p_cons 4.725000e-01   p_joint 5.924000e-01

Outputting figure to mutsig2_images.part000000000076/HAL.2_2054_10000_0.5043_0.4725_0.5924.png
                gene_name: HAL
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 84 percent done.
HAND2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.286641e-02	ci left: 8.968261e-01	ci right 9.085381e-01	k: 9028	n:10000
Cons ci ratio: 9.607845e-02	ci left: 1.358015e-01	ci right 1.496073e-01	k: 1426	n:10000
KS ci ratio: 1.068561e-02	ci left: 9.257524e-01	ci right 9.357949e-01	k: 9309	n:10000
HAND2   10000 perm   1 sec   (7462 perm/sec)   p_kst 9.309000e-01   p_cons 1.426000e-01   p_joint 9.028000e-01

Outputting figure to mutsig2_images.part000000000076/HAND2.2_662_10000_0.9309_0.1426_0.9028.png
                gene_name: HAND2
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 86 percent done.
HAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.863014e-01	ci left: 1.576399e-02	ci right 2.112177e-02	k: 183	n:10000
Cons ci ratio: 4.571011e-01	ci left: 5.637697e-03	ci right 9.058734e-03	k: 72	n:10000
KS ci ratio: 2.913003e-02	ci left: 6.347256e-01	ci right 6.535903e-01	k: 6442	n:10000
HAP1   10000 perm   2 sec   (6089 perm/sec)   p_kst 6.442000e-01   p_cons 7.200000e-03   p_joint 1.830000e-02

Joint ci ratio: 1.136954e-01	ci left: 5.290189e-02	ci right 5.932793e-02	k: 1121	n:20000
Cons ci ratio: 2.737235e-01	ci left: 8.760815e-03	ci right 1.158433e-02	k: 202	n:20000
KS ci ratio: 2.062590e-02	ci left: 6.369169e-01	ci right 6.502413e-01	k: 12872	n:20000
HAP1   20000 perm   4 sec   (5190 perm/sec)   p_kst 6.436000e-01   p_cons 1.010000e-02   p_joint 5.605000e-02

Joint ci ratio: 1.500838e-01	ci left: 2.056252e-02	ci right 2.393088e-02	k: 666	n:30000
Cons ci ratio: 2.274923e-01	ci left: 8.684843e-03	ci right 1.094494e-02	k: 293	n:30000
KS ci ratio: 1.685958e-02	ci left: 6.376484e-01	ci right 6.485239e-01	k: 19293	n:30000
HAP1   30000 perm   6 sec   (4884 perm/sec)   p_kst 6.431000e-01   p_cons 9.766667e-03   p_joint 2.220000e-02

Joint ci ratio: 1.532193e-01	ci left: 1.486526e-02	ci right 1.735571e-02	k: 643	n:40000
Cons ci ratio: 1.985553e-01	ci left: 8.691436e-03	ci right 1.063075e-02	k: 385	n:40000
KS ci ratio: 1.457709e-02	ci left: 6.391344e-01	ci right 6.485447e-01	k: 25754	n:40000
HAP1   40000 perm   9 sec   (4660 perm/sec)   p_kst 6.438500e-01   p_cons 9.625000e-03   p_joint 1.607500e-02

Joint ci ratio: 1.315840e-01	ci left: 1.629133e-02	ci right 1.860519e-02	k: 871	n:50000
Cons ci ratio: 1.776867e-01	ci left: 8.783002e-03	ci right 1.051464e-02	k: 481	n:50000
KS ci ratio: 1.303735e-02	ci left: 6.396645e-01	ci right 6.480788e-01	k: 32194	n:50000
HAP1   50000 perm   11 sec   (4492 perm/sec)   p_kst 6.438800e-01   p_cons 9.620000e-03   p_joint 1.742000e-02

Joint ci ratio: 1.260350e-01	ci left: 1.486579e-02	ci right 1.688144e-02	k: 951	n:60000
Cons ci ratio: 1.611397e-01	ci left: 8.979225e-03	ci right 1.056873e-02	k: 585	n:60000
KS ci ratio: 1.188493e-02	ci left: 6.406714e-01	ci right 6.483479e-01	k: 38671	n:60000
HAP1   60000 perm   14 sec   (4374 perm/sec)   p_kst 6.445167e-01   p_cons 9.750000e-03   p_joint 1.585000e-02

Joint ci ratio: 1.165615e-01	ci left: 1.497244e-02	ci right 1.683943e-02	k: 1112	n:70000
Cons ci ratio: 1.494812e-01	ci left: 9.000940e-03	ci right 1.046870e-02	k: 680	n:70000
KS ci ratio: 1.101128e-02	ci left: 6.406260e-01	ci right 6.477335e-01	k: 45093	n:70000
HAP1   70000 perm   16 sec   (4277 perm/sec)   p_kst 6.441857e-01   p_cons 9.714286e-03   p_joint 1.588571e-02

Joint ci ratio: 1.167857e-01	ci left: 1.307585e-02	ci right 1.470968e-02	k: 1110	n:80000
Cons ci ratio: 1.411409e-01	ci left: 8.875580e-03	ci right 1.023534e-02	k: 763	n:80000
KS ci ratio: 1.026669e-02	ci left: 6.423491e-01	ci right 6.489904e-01	k: 51654	n:80000
HAP1   80000 perm   19 sec   (4192 perm/sec)   p_kst 6.456750e-01   p_cons 9.537500e-03   p_joint 1.387500e-02

Joint ci ratio: 1.002645e-01	ci left: 1.586201e-02	ci right 1.754712e-02	k: 1502	n:90000
Cons ci ratio: 1.333434e-01	ci left: 8.876546e-03	ci right 1.015537e-02	k: 855	n:90000
KS ci ratio: 9.678067e-03	ci left: 6.426095e-01	ci right 6.488700e-01	k: 58117	n:90000
HAP1   90000 perm   22 sec   (4106 perm/sec)   p_kst 6.457444e-01   p_cons 9.500000e-03   p_joint 1.668889e-02

Joint ci ratio: 9.457366e-02	ci left: 1.609060e-02	ci right 1.769759e-02	k: 1688	n:100000
Cons ci ratio: 1.254471e-01	ci left: 9.063037e-03	ci right 1.028566e-02	k: 966	n:100000
KS ci ratio: 9.180516e-03	ci left: 6.428165e-01	ci right 6.487551e-01	k: 64579	n:100000
HAP1   100000 perm   25 sec   (4026 perm/sec)   p_kst 6.457900e-01   p_cons 9.660000e-03   p_joint 1.688000e-02

Joint ci ratio: 9.416738e-02	ci left: 1.477824e-02	ci right 1.624746e-02	k: 1705	n:110000
Cons ci ratio: 1.202789e-01	ci left: 8.988086e-03	ci right 1.014708e-02	k: 1051	n:110000
KS ci ratio: 8.752572e-03	ci left: 6.429926e-01	ci right 6.486542e-01	k: 71041	n:110000
HAP1   110000 perm   28 sec   (3956 perm/sec)   p_kst 6.458273e-01   p_cons 9.554545e-03   p_joint 1.550000e-02

Joint ci ratio: 9.040772e-02	ci left: 1.472715e-02	ci right 1.612974e-02	k: 1850	n:120000
Cons ci ratio: 1.153939e-01	ci left: 8.975061e-03	ci right 1.008217e-02	k: 1142	n:120000
KS ci ratio: 8.390685e-03	ci left: 6.425270e-01	ci right 6.479493e-01	k: 77429	n:120000
HAP1   120000 perm   31 sec   (3882 perm/sec)   p_kst 6.452417e-01   p_cons 9.516667e-03   p_joint 1.541667e-02

Joint ci ratio: 8.348394e-02	ci left: 1.598022e-02	ci right 1.737992e-02	k: 2167	n:130000
Cons ci ratio: 1.108330e-01	ci left: 9.002250e-03	ci right 1.006595e-02	k: 1238	n:130000
KS ci ratio: 8.062247e-03	ci left: 6.425921e-01	ci right 6.478014e-01	k: 83876	n:130000
HAP1   130000 perm   34 sec   (3815 perm/sec)   p_kst 6.452000e-01   p_cons 9.523077e-03   p_joint 1.666923e-02

Joint ci ratio: 8.049572e-02	ci left: 1.598619e-02	ci right 1.733394e-02	k: 2331	n:140000
Cons ci ratio: 1.064919e-01	ci left: 9.074972e-03	ci right 1.010264e-02	k: 1341	n:140000
KS ci ratio: 7.763769e-03	ci left: 6.429948e-01	ci right 6.480134e-01	k: 90371	n:140000
HAP1   140000 perm   37 sec   (3748 perm/sec)   p_kst 6.455071e-01   p_cons 9.578571e-03   p_joint 1.665000e-02

Joint ci ratio: 7.780700e-02	ci left: 1.599214e-02	ci right 1.729331e-02	k: 2495	n:150000
Cons ci ratio: 1.028759e-01	ci left: 9.093223e-03	ci right 1.008587e-02	k: 1437	n:150000
KS ci ratio: 7.504348e-03	ci left: 6.428461e-01	ci right 6.476950e-01	k: 96791	n:150000
HAP1   150000 perm   41 sec   (3675 perm/sec)   p_kst 6.452733e-01   p_cons 9.580000e-03   p_joint 1.663333e-02

Joint ci ratio: 7.534207e-02	ci left: 1.601027e-02	ci right 1.726983e-02	k: 2661	n:160000
Cons ci ratio: 1.000668e-01	ci left: 9.024374e-03	ci right 9.981026e-03	k: 1519	n:160000
KS ci ratio: 7.262856e-03	ci left: 6.431253e-01	ci right 6.478194e-01	k: 103276	n:160000
HAP1   160000 perm   44 sec   (3617 perm/sec)   p_kst 6.454750e-01   p_cons 9.493750e-03   p_joint 1.663125e-02

Joint ci ratio: 7.301876e-02	ci left: 1.606150e-02	ci right 1.728448e-02	k: 2833	n:170000
Cons ci ratio: 9.680715e-02	ci left: 9.090248e-03	ci right 1.002071e-02	k: 1623	n:170000
KS ci ratio: 7.052235e-03	ci left: 6.427906e-01	ci right 6.473456e-01	k: 109662	n:170000
HAP1   170000 perm   48 sec   (3546 perm/sec)   p_kst 6.450706e-01   p_cons 9.547059e-03   p_joint 1.666471e-02

Outputting figure to mutsig2_images.part000000000076/HAP1.2_1928_170000_0.64507_0.0095471_0.016665.png
                gene_name: HAP1
               theta_stop: 0.097 
                    nperm: 170000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.0095 
      ci_cons_bounds_left: 0.0091 
     ci_cons_bounds_right: 0.010 
                  p_joint: 0.017 
     ci_joint_bounds_left: 0.016 
    ci_joint_bounds_right: 0.017 

Current progress: 88 percent done.
HAPLN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.439761e-02	ci left: 3.324015e-01	ci right 3.510908e-01	k: 3417	n:10000
Cons ci ratio: 4.881014e-02	ci left: 3.824141e-01	ci right 4.016488e-01	k: 3920	n:10000
KS ci ratio: 9.731480e-02	ci left: 1.327651e-01	ci right 1.464456e-01	k: 1395	n:10000
HAPLN4   10000 perm   2 sec   (6608 perm/sec)   p_kst 1.395000e-01   p_cons 3.920000e-01   p_joint 3.417000e-01

Outputting figure to mutsig2_images.part000000000076/HAPLN4.2_1229_10000_0.1395_0.392_0.3417.png
                gene_name: HAPLN4
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 91 percent done.
HARS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.317620e-02	ci left: 5.728619e-01	ci right 5.922899e-01	k: 5826	n:10000
KS ci ratio: 9.772196e-02	ci left: 1.317858e-01	ci right 1.454255e-01	k: 1385	n:10000
HARS   10000 perm   2 sec   (6344 perm/sec)   p_kst 1.385000e-01   p_cons 5.826000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000076/HARS.2_1582_10000_0.1385_0.5826_1.png
                gene_name: HARS
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
HARS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.566195e-01	ci left: 1.987038e-02	ci right 2.581208e-02	k: 227	n:10000
Cons ci ratio: 1.234719e-02	ci left: 9.040153e-01	ci right 9.153447e-01	k: 9098	n:10000
KS ci ratio: 3.587123e-01	ci left: 9.685560e-03	ci right 1.400583e-02	k: 117	n:10000
HARS2   10000 perm   2 sec   (6430 perm/sec)   p_kst 1.170000e-02   p_cons 9.098000e-01   p_joint 2.270000e-02

Joint ci ratio: 1.310813e-01	ci left: 3.998807e-02	ci right 4.564582e-02	k: 855	n:20000
Cons ci ratio: 8.439069e-03	ci left: 9.112535e-01	ci right 9.190253e-01	k: 18304	n:20000
KS ci ratio: 2.586925e-01	ci left: 9.881491e-03	ci right 1.286311e-02	k: 226	n:20000
HARS2   20000 perm   4 sec   (5403 perm/sec)   p_kst 1.130000e-02   p_cons 9.152000e-01   p_joint 4.275000e-02

Joint ci ratio: 1.076870e-01	ci left: 4.001771e-02	ci right 4.460480e-02	k: 1268	n:30000
Cons ci ratio: 7.044207e-03	ci left: 9.084327e-01	ci right 9.148873e-01	k: 27351	n:30000
KS ci ratio: 2.120119e-01	ci left: 1.007160e-02	ci right 1.249111e-02	k: 337	n:30000
HARS2   30000 perm   6 sec   (5033 perm/sec)   p_kst 1.123333e-02   p_cons 9.117000e-01   p_joint 4.226667e-02

Joint ci ratio: 1.073662e-01	ci left: 3.051591e-02	ci right 3.400243e-02	k: 1289	n:40000
Cons ci ratio: 6.117309e-03	ci left: 9.084207e-01	ci right 9.140195e-01	k: 36450	n:40000
KS ci ratio: 1.823171e-01	ci left: 1.038273e-02	ci right 1.248909e-02	k: 456	n:40000
HARS2   40000 perm   8 sec   (4852 perm/sec)   p_kst 1.140000e-02   p_cons 9.112500e-01   p_joint 3.222500e-02

Joint ci ratio: 1.657693e-01	ci left: 1.014260e-02	ci right 1.199482e-02	k: 552	n:50000
Cons ci ratio: 5.448700e-03	ci left: 9.094019e-01	ci right 9.143902e-01	k: 45596	n:50000
KS ci ratio: 1.657693e-01	ci left: 1.014260e-02	ci right 1.199482e-02	k: 552	n:50000
HARS2   50000 perm   11 sec   (4686 perm/sec)   p_kst 1.104000e-02   p_cons 9.119200e-01   p_joint 1.104000e-02

Joint ci ratio: 1.509358e-01	ci left: 1.027706e-02	ci right 1.197073e-02	k: 666	n:60000
Cons ci ratio: 4.979160e-03	ci left: 9.094520e-01	ci right 9.140081e-01	k: 54705	n:60000
KS ci ratio: 1.509358e-01	ci left: 1.027706e-02	ci right 1.197073e-02	k: 666	n:60000
HARS2   60000 perm   13 sec   (4536 perm/sec)   p_kst 1.110000e-02   p_cons 9.117500e-01   p_joint 1.110000e-02

Joint ci ratio: 1.389442e-01	ci left: 1.046117e-02	ci right 1.203687e-02	k: 786	n:70000
Cons ci ratio: 4.621827e-03	ci left: 9.091985e-01	ci right 9.134245e-01	k: 63793	n:70000
KS ci ratio: 1.389442e-01	ci left: 1.046117e-02	ci right 1.203687e-02	k: 786	n:70000
HARS2   70000 perm   16 sec   (4409 perm/sec)   p_kst 1.122857e-02   p_cons 9.113286e-01   p_joint 1.122857e-02

Joint ci ratio: 1.314136e-01	ci left: 1.027667e-02	ci right 1.173412e-02	k: 879	n:80000
Cons ci ratio: 4.324728e-03	ci left: 9.092834e-01	ci right 9.132367e-01	k: 72902	n:80000
KS ci ratio: 1.314136e-01	ci left: 1.027667e-02	ci right 1.173412e-02	k: 879	n:80000
HARS2   80000 perm   19 sec   (4314 perm/sec)   p_kst 1.098750e-02   p_cons 9.112750e-01   p_joint 1.098750e-02

Joint ci ratio: 1.243432e-01	ci left: 1.024265e-02	ci right 1.161137e-02	k: 982	n:90000
Cons ci ratio: 4.073099e-03	ci left: 9.095695e-01	ci right 9.132928e-01	k: 82030	n:90000
KS ci ratio: 1.243432e-01	ci left: 1.024265e-02	ci right 1.161137e-02	k: 982	n:90000
HARS2   90000 perm   21 sec   (4227 perm/sec)   p_kst 1.091111e-02   p_cons 9.114444e-01   p_joint 1.091111e-02

Joint ci ratio: 1.172172e-01	ci left: 1.041130e-02	ci right 1.171729e-02	k: 1105	n:100000
Cons ci ratio: 3.857227e-03	ci left: 9.099548e-01	ci right 9.134813e-01	k: 91173	n:100000
KS ci ratio: 1.172172e-01	ci left: 1.041130e-02	ci right 1.171729e-02	k: 1105	n:100000
HARS2   100000 perm   24 sec   (4138 perm/sec)   p_kst 1.105000e-02   p_cons 9.117300e-01   p_joint 1.105000e-02

Joint ci ratio: 1.115585e-01	ci left: 1.048039e-02	ci right 1.172741e-02	k: 1220	n:110000
Cons ci ratio: 3.679433e-03	ci left: 9.099620e-01	ci right 9.133253e-01	k: 100282	n:110000
KS ci ratio: 1.115585e-01	ci left: 1.048039e-02	ci right 1.172741e-02	k: 1220	n:110000
HARS2   110000 perm   27 sec   (4062 perm/sec)   p_kst 1.109091e-02   p_cons 9.116545e-01   p_joint 1.109091e-02

Joint ci ratio: 1.075878e-01	ci left: 1.035264e-02	ci right 1.153784e-02	k: 1312	n:120000
Cons ci ratio: 3.523790e-03	ci left: 9.099881e-01	ci right 9.132086e-01	k: 109393	n:120000
KS ci ratio: 1.075878e-01	ci left: 1.035264e-02	ci right 1.153784e-02	k: 1312	n:120000
HARS2   120000 perm   30 sec   (3982 perm/sec)   p_kst 1.093333e-02   p_cons 9.116083e-01   p_joint 1.093333e-02

Joint ci ratio: 1.037890e-01	ci left: 1.029019e-02	ci right 1.142410e-02	k: 1410	n:130000
Cons ci ratio: 3.384261e-03	ci left: 9.101136e-01	ci right 9.132065e-01	k: 118517	n:130000
KS ci ratio: 1.037890e-01	ci left: 1.029019e-02	ci right 1.142410e-02	k: 1410	n:130000
HARS2   130000 perm   33 sec   (3921 perm/sec)   p_kst 1.084615e-02   p_cons 9.116692e-01   p_joint 1.084615e-02

Joint ci ratio: 9.933958e-02	ci left: 1.045325e-02	ci right 1.155286e-02	k: 1539	n:140000
Cons ci ratio: 3.257198e-03	ci left: 9.103672e-01	ci right 9.133443e-01	k: 127661	n:140000
KS ci ratio: 9.933958e-02	ci left: 1.045325e-02	ci right 1.155286e-02	k: 1539	n:140000
HARS2   140000 perm   36 sec   (3853 perm/sec)   p_kst 1.099286e-02   p_cons 9.118643e-01   p_joint 1.099286e-02

Outputting figure to mutsig2_images.part000000000076/HARS2.2_1573_140000_0.010993_0.91186_0.010993.png
                gene_name: HARS2
               theta_stop: 0.099 
                    nperm: 140000 
                     p_ks: 0.011 
        ci_ks_bounds_left: 0.010 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.011 
     ci_joint_bounds_left: 0.010 
    ci_joint_bounds_right: 0.012 

Current progress: 95 percent done.
HAS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.330158e-02	ci left: 7.301724e-01	ci right 7.474883e-01	k: 7389	n:10000
KS ci ratio: 4.315524e-02	ci left: 4.422106e-01	ci right 4.618174e-01	k: 4520	n:10000
HAS2   10000 perm   2 sec   (5718 perm/sec)   p_kst 4.520000e-01   p_cons 7.389000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000076/HAS2.2_1671_10000_0.452_0.7389_1.png
                gene_name: HAS2
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
HAT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.796773e-03	ci left: 9.674153e-01	ci right 9.741067e-01	k: 9709	n:10000
Cons ci ratio: 1.474450e-02	ci left: 8.694829e-01	ci right 8.824972e-01	k: 8761	n:10000
KS ci ratio: 2.888270e-02	ci left: 6.386479e-01	ci right 6.574658e-01	k: 6481	n:10000
HAT1   10000 perm   2 sec   (6276 perm/sec)   p_kst 6.481000e-01   p_cons 8.761000e-01   p_joint 9.709000e-01

Outputting figure to mutsig2_images.part000000000076/HAT1.2_1304_10000_0.6481_0.8761_0.9709.png
                gene_name: HAT1
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.97 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000076
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 76 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1708>
Subject: Job 8004146: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1708>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000077> was used as the working directory.
Started at Sun Nov 11 15:06:32 2012
Results reported at Sun Nov 11 15:16:35 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000077.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000077.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 77  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000077.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    643.42 sec.
    Max Memory :      4754 MB
    Max Swap   :      7133 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
77
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 77
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 77: processing genes 6877 - 6966
Calculating significance of each gene.
Using projection method.
6877	HAUS3	1
6878	HAUS4	6.658914e-01
6879	HAUS5	5.613114e-01
6880	HAUS6	2.978566e-01
6881	HAUS7	1
6882	HAUS8	4.845508e-01
6883	HAVCR1	4.697345e-02
6884	HAVCR2	1
6885	HAX1	1.270484e-01
6886	HBA1	1
6887	HBA2	1
6888	HBB	1.276018e-01
6889	HBD	4.824345e-03
6890	HBE1	1.160360e-01
6891	HBEGF	5.810575e-01
6892	HBG1	2.969481e-01
6893	HBG2	2.992319e-01
6894	HBM	1
6895	HBP1	3.686280e-01
6896	HBQ1	1
6897	HBS1L	6.874783e-01
6898	HBXIP	4.329724e-01
6899	HCCS	4.839975e-01
6900	HCFC1	9.987587e-01
6901	HCFC1R1	2.420230e-01
6902	HCFC2	2.140599e-02
6903	HCK	1.234735e-01
6904	HCLS1	2.991379e-01
6905	HCN1	1
6906	HCN2	7.520159e-01
6907	HCN3	6.177589e-01
6908	HCN4	8.648232e-02
6909	HCP5	1
6910	HCRT	1
6911	HCRTR1	1
6912	HCRTR2	1.966915e-01
6913	HCST	1
6914	HDAC1	3.921174e-01
6915	HDAC10	9.420140e-01
6916	HDAC11	1
6917	HDAC2	1
6918	HDAC3	6.777790e-01
6919	HDAC4	1
6920	HDAC5	9.672651e-01
6921	HDAC6	1
6922	HDAC7	1
6923	HDAC8	5.865925e-01
6924	HDAC9	4.073760e-04
6925	HDC	6.448783e-02
6926	HDDC2	1
6927	HDDC3	1
6928	HDGF	2.434616e-01
6929	HDGFL1	2.558590e-01
6930	HDGFRP2	6.362113e-01
6931	HDGFRP3	1
6932	HDHD1A	4.181708e-01
6933	HDHD2	1
6934	HDHD3	1
6935	HDLBP	9.918126e-01
6936	HDX	4.444719e-02
6937	HEATR1	9.868337e-01
6938	HEATR2	1
6939	HEATR3	6.797053e-01
6940	HEATR4	7.716342e-01
6941	HEATR5A	9.258508e-01
6942	HEATR5B	9.997737e-01
6943	HEATR6	6.474181e-01
6944	HEATR7B2	1.075133e-01
6945	HEBP1	1
6946	HEBP2	1.805164e-01
6947	HECA	6.277584e-01
6948	HECTD1	9.765042e-01
6949	HECTD2	9.510611e-01
6950	HECTD3	8.506552e-01
6951	HECW1	9.519129e-01
6952	HECW2	9.436040e-01
6953	HEG1	1
6954	HELB	3.018886e-01
6955	HELLS	1
6956	HELQ	9.828272e-01
6957	HELT	1
6958	HELZ	8.187509e-01
6959	HEMGN	3.374789e-02
6960	HEMK1	1
6961	HEPACAM	1.566746e-01
6962	HEPACAM2	4.349733e-01
6963	HEPH	9.668475e-01
6964	HEPHL1	6.565321e-01
6965	HEPN1	1
6966	HERC1	9.986070e-01
Done

Running MutSig 2:
Scatter job 77: processing genes 6877 - 6966
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
HCN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.348632e-01	ci left: 2.391158e-02	ci right 3.036784e-02	k: 270	n:10000
Cons ci ratio: 2.668554e-02	ci left: 6.740801e-01	ci right 6.924131e-01	k: 6833	n:10000
KS ci ratio: 3.920006e-01	ci left: 7.963073e-03	ci right 1.193024e-02	k: 98	n:10000
HCN1   10000 perm   2 sec   (4372 perm/sec)   p_kst 9.800000e-03   p_cons 6.833000e-01   p_joint 2.700000e-02

Joint ci ratio: 1.642181e-01	ci left: 2.542143e-02	ci right 3.001725e-02	k: 553	n:20000
Cons ci ratio: 1.887668e-02	ci left: 6.766508e-01	ci right 6.895959e-01	k: 13663	n:20000
KS ci ratio: 2.900427e-01	ci left: 7.737913e-03	ci right 1.040775e-02	k: 180	n:20000
HCN1   20000 perm   8 sec   (2545 perm/sec)   p_kst 9.000000e-03   p_cons 6.831500e-01   p_joint 2.765000e-02

Joint ci ratio: 1.692487e-01	ci left: 1.607835e-02	ci right 1.908278e-02	k: 526	n:30000
Cons ci ratio: 1.429090e-02	ci left: 7.097875e-01	ci right 7.200375e-01	k: 21448	n:30000
KS ci ratio: 2.319143e-01	ci left: 8.339104e-03	ci right 1.055746e-02	k: 282	n:30000
HCN1   30000 perm   11 sec   (2824 perm/sec)   p_kst 9.400000e-03   p_cons 7.149333e-01   p_joint 1.753333e-02

Joint ci ratio: 1.269674e-01	ci left: 2.179539e-02	ci right 2.477437e-02	k: 930	n:40000
Cons ci ratio: 1.241378e-02	ci left: 7.092423e-01	ci right 7.181267e-01	k: 28548	n:40000
KS ci ratio: 1.996022e-01	ci left: 8.596380e-03	ci right 1.052582e-02	k: 381	n:40000
HCN1   40000 perm   13 sec   (2974 perm/sec)   p_kst 9.525000e-03   p_cons 7.137000e-01   p_joint 2.325000e-02

Joint ci ratio: 1.271308e-01	ci left: 1.747251e-02	ci right 1.986384e-02	k: 932	n:50000
Cons ci ratio: 1.097729e-02	ci left: 7.143747e-01	ci right 7.222799e-01	k: 35917	n:50000
KS ci ratio: 1.805451e-01	ci left: 8.496340e-03	ci right 1.020135e-02	k: 466	n:50000
HCN1   50000 perm   16 sec   (3048 perm/sec)   p_kst 9.320000e-03   p_cons 7.183400e-01   p_joint 1.864000e-02

Joint ci ratio: 1.190471e-01	ci left: 1.669233e-02	ci right 1.882135e-02	k: 1064	n:60000
Cons ci ratio: 1.057058e-02	ci left: 6.925358e-01	ci right 6.999119e-01	k: 41774	n:60000
KS ci ratio: 1.660757e-01	ci left: 8.435560e-03	ci right 9.979140e-03	k: 551	n:60000
HCN1   60000 perm   19 sec   (3093 perm/sec)   p_kst 9.183333e-03   p_cons 6.962333e-01   p_joint 1.773333e-02

Joint ci ratio: 1.149966e-01	ci left: 1.538878e-02	ci right 1.728019e-02	k: 1142	n:70000
Cons ci ratio: 9.772372e-03	ci left: 6.934227e-01	ci right 7.002467e-01	k: 48779	n:70000
KS ci ratio: 1.563499e-01	ci left: 8.203793e-03	ci right 9.608798e-03	k: 622	n:70000
HCN1   70000 perm   22 sec   (3112 perm/sec)   p_kst 8.885714e-03   p_cons 6.968429e-01   p_joint 1.631429e-02

Joint ci ratio: 1.147600e-01	ci left: 1.354942e-02	ci right 1.521107e-02	k: 1149	n:80000
Cons ci ratio: 9.139449e-03	ci left: 6.937269e-01	ci right 7.001088e-01	k: 55754	n:80000
KS ci ratio: 1.464598e-01	ci left: 8.224656e-03	ci right 9.536332e-03	k: 709	n:80000
HCN1   80000 perm   26 sec   (3115 perm/sec)   p_kst 8.862500e-03   p_cons 6.969250e-01   p_joint 1.436250e-02

Joint ci ratio: 9.350077e-02	ci left: 1.825915e-02	ci right 2.006092e-02	k: 1723	n:90000
Cons ci ratio: 8.609567e-03	ci left: 6.942643e-01	ci right 7.002785e-01	k: 62755	n:90000
KS ci ratio: 1.371983e-01	ci left: 8.371844e-03	ci right 9.615668e-03	k: 808	n:90000
HCN1   90000 perm   29 sec   (3115 perm/sec)   p_kst 8.977778e-03   p_cons 6.972778e-01   p_joint 1.914444e-02

Joint ci ratio: 8.648610e-02	ci left: 1.925868e-02	ci right 2.100931e-02	k: 2012	n:100000
Cons ci ratio: 8.163265e-03	ci left: 6.946524e-01	ci right 7.003562e-01	k: 69751	n:100000
KS ci ratio: 1.282207e-01	ci left: 8.665931e-03	ci right 9.862792e-03	k: 925	n:100000
HCN1   100000 perm   32 sec   (3108 perm/sec)   p_kst 9.250000e-03   p_cons 6.975100e-01   p_joint 2.012000e-02

Joint ci ratio: 8.233427e-02	ci left: 1.935893e-02	ci right 2.103013e-02	k: 2220	n:110000
Cons ci ratio: 7.794960e-03	ci left: 6.941561e-01	ci right 6.995972e-01	k: 76657	n:110000
KS ci ratio: 1.228394e-01	ci left: 8.608960e-03	ci right 9.744417e-03	k: 1008	n:110000
HCN1   110000 perm   36 sec   (3057 perm/sec)   p_kst 9.163636e-03   p_cons 6.968818e-01   p_joint 2.018182e-02

Joint ci ratio: 7.861262e-02	ci left: 1.950136e-02	ci right 2.110527e-02	k: 2435	n:120000
Cons ci ratio: 7.448659e-03	ci left: 6.950926e-01	ci right 7.002978e-01	k: 83724	n:120000
KS ci ratio: 1.186325e-01	ci left: 8.481476e-03	ci right 9.559119e-03	k: 1081	n:120000
HCN1   120000 perm   39 sec   (3041 perm/sec)   p_kst 9.008333e-03   p_cons 6.977000e-01   p_joint 2.029167e-02

Joint ci ratio: 8.069022e-02	ci left: 1.711078e-02	ci right 1.855700e-02	k: 2317	n:130000
Cons ci ratio: 7.159706e-03	ci left: 6.950025e-01	ci right 7.000041e-01	k: 90676	n:130000
KS ci ratio: 1.135475e-01	ci left: 8.568506e-03	ci right 9.607415e-03	k: 1180	n:130000
HCN1   130000 perm   43 sec   (3011 perm/sec)   p_kst 9.076923e-03   p_cons 6.975077e-01   p_joint 1.782308e-02

Joint ci ratio: 7.757031e-02	ci left: 1.721891e-02	ci right 1.861545e-02	k: 2507	n:140000
Cons ci ratio: 6.905466e-03	ci left: 6.947140e-01	ci right 6.995350e-01	k: 97598	n:140000
KS ci ratio: 1.093671e-01	ci left: 8.595302e-03	ci right 9.596617e-03	k: 1272	n:140000
HCN1   140000 perm   47 sec   (2969 perm/sec)   p_kst 9.085714e-03   p_cons 6.971286e-01   p_joint 1.790714e-02

Joint ci ratio: 7.457553e-02	ci left: 1.741171e-02	ci right 1.876700e-02	k: 2712	n:150000
Cons ci ratio: 6.664606e-03	ci left: 6.952218e-01	ci right 6.998773e-01	k: 104633	n:150000
KS ci ratio: 1.054222e-01	ci left: 8.651593e-03	ci right 9.620856e-03	k: 1369	n:150000
HCN1   150000 perm   51 sec   (2953 perm/sec)   p_kst 9.126667e-03   p_cons 6.975533e-01   p_joint 1.808000e-02

Joint ci ratio: 7.475874e-02	ci left: 1.626179e-02	ci right 1.753081e-02	k: 2702	n:160000
Cons ci ratio: 6.442135e-03	ci left: 6.960067e-01	ci right 7.005111e-01	k: 111722	n:160000
KS ci ratio: 1.018754e-01	ci left: 8.701415e-03	ci right 9.641499e-03	k: 1466	n:160000
HCN1   160000 perm   55 sec   (2930 perm/sec)   p_kst 9.162500e-03   p_cons 6.982625e-01   p_joint 1.688750e-02

Joint ci ratio: 7.476842e-02	ci left: 1.531648e-02	ci right 1.651188e-02	k: 2704	n:170000
Cons ci ratio: 6.250369e-03	ci left: 6.960352e-01	ci right 7.004051e-01	k: 118698	n:170000
KS ci ratio: 9.879175e-02	ci left: 8.722904e-03	ci right 9.635129e-03	k: 1559	n:170000
HCN1   170000 perm   58 sec   (2911 perm/sec)   p_kst 9.170588e-03   p_cons 6.982235e-01   p_joint 1.590588e-02

Outputting figure to mutsig2_images.part000000000077/HCN1.33_2705_170000_0.0091706_0.69822_0.015906.png
                gene_name: HCN1
               theta_stop: 0.099 
                    nperm: 170000 
                     p_ks: 0.0092 
        ci_ks_bounds_left: 0.0087 
       ci_ks_bounds_right: 0.0096 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.016 
     ci_joint_bounds_left: 0.015 
    ci_joint_bounds_right: 0.017 

Current progress: 2 percent done.
HEATR7B2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.846421e-02	ci left: 4.995504e-01	ci right 5.192441e-01	k: 5094	n:10000
Cons ci ratio: 2.800798e-02	ci left: 6.526327e-01	ci right 6.712729e-01	k: 6620	n:10000
KS ci ratio: 4.946129e-02	ci left: 3.761441e-01	ci right 3.953225e-01	k: 3857	n:10000
HEATR7B2   10000 perm   3 sec   (3599 perm/sec)   p_kst 3.857000e-01   p_cons 6.620000e-01   p_joint 5.094000e-01

Outputting figure to mutsig2_images.part000000000077/HEATR7B2.31_4926_10000_0.3857_0.662_0.5094.png
                gene_name: HEATR7B2
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 4 percent done.
HEPH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.991607e-02	ci left: 1.524718e-01	ci right 1.669270e-01	k: 1596	n:10000
Cons ci ratio: 1.062743e-02	ci left: 9.264756e-01	ci right 9.364713e-01	k: 9316	n:10000
KS ci ratio: 1.219806e-01	ci left: 8.786290e-02	ci right 9.937509e-02	k: 935	n:10000
HEPH   10000 perm   3 sec   (3974 perm/sec)   p_kst 9.350000e-02   p_cons 9.316000e-01   p_joint 1.596000e-01

Joint ci ratio: 6.109473e-02	ci left: 1.654593e-01	ci right 1.759366e-01	k: 3413	n:20000
Cons ci ratio: 7.571491e-03	ci left: 9.269900e-01	ci right 9.340843e-01	k: 18612	n:20000
KS ci ratio: 8.771001e-02	ci left: 8.680364e-02	ci right 9.481578e-02	k: 1815	n:20000
HEPH   20000 perm   5 sec   (3803 perm/sec)   p_kst 9.075000e-02   p_cons 9.306000e-01   p_joint 1.706500e-01

Outputting figure to mutsig2_images.part000000000077/HEPH.17_3723_20000_0.09075_0.9306_0.17065.png
                gene_name: HEPH
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.091 
        ci_ks_bounds_left: 0.087 
       ci_ks_bounds_right: 0.095 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 6 percent done.
HDAC9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.670614e-02	ci left: 1.622916e-01	ci right 1.771013e-01	k: 1696	n:10000
Cons ci ratio: 1.007556e-02	ci left: 9.331980e-01	ci right 9.427449e-01	k: 9381	n:10000
KS ci ratio: 1.260329e-01	ci left: 8.261521e-02	ci right 9.382602e-02	k: 881	n:10000
HDAC9   10000 perm   2 sec   (4693 perm/sec)   p_kst 8.810000e-02   p_cons 9.381000e-01   p_joint 1.696000e-01

Joint ci ratio: 6.562248e-02	ci left: 1.464090e-01	ci right 1.563926e-01	k: 3027	n:20000
Cons ci ratio: 6.992765e-03	ci left: 9.368243e-01	ci right 9.434470e-01	k: 18804	n:20000
KS ci ratio: 8.912054e-02	ci left: 8.425585e-02	ci right 9.216434e-02	k: 1763	n:20000
HDAC9   20000 perm   5 sec   (4263 perm/sec)   p_kst 8.815000e-02   p_cons 9.402000e-01   p_joint 1.513500e-01

Outputting figure to mutsig2_images.part000000000077/HDAC9.16_3446_20000_0.08815_0.9402_0.15135.png
                gene_name: HDAC9
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.088 
        ci_ks_bounds_left: 0.084 
       ci_ks_bounds_right: 0.092 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 8 percent done.
HECW1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.606713e-02	ci left: 8.491691e-01	ci right 8.630228e-01	k: 8562	n:10000
Cons ci ratio: 2.937825e-02	ci left: 6.308041e-01	ci right 6.497141e-01	k: 6403	n:10000
KS ci ratio: 3.537443e-02	ci left: 5.412878e-01	ci right 5.608824e-01	k: 5511	n:10000
HECW1   10000 perm   2 sec   (4041 perm/sec)   p_kst 5.511000e-01   p_cons 6.403000e-01   p_joint 8.562000e-01

Outputting figure to mutsig2_images.part000000000077/HECW1.14_4933_10000_0.5511_0.6403_0.8562.png
                gene_name: HECW1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 10 percent done.
HERC1
Processing conservation and coverage...
67% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.303106e-02	ci left: 2.700268e-01	ci right 2.877022e-01	k: 2788	n:10000
Cons ci ratio: 1.717671e-01	ci left: 4.523448e-02	ci right 5.383036e-02	k: 494	n:10000
KS ci ratio: 1.608017e-02	ci left: 8.489651e-01	ci right 8.628268e-01	k: 8560	n:10000
HERC1   10000 perm   4 sec   (2802 perm/sec)   p_kst 8.560000e-01   p_cons 4.940000e-02   p_joint 2.788000e-01

Joint ci ratio: 4.922394e-02	ci left: 2.347882e-01	ci right 2.466873e-01	k: 4814	n:20000
Cons ci ratio: 1.227043e-01	ci left: 4.556361e-02	ci right 5.156850e-02	k: 970	n:20000
KS ci ratio: 1.246726e-02	ci left: 8.264924e-01	ci right 8.369110e-01	k: 16635	n:20000
HERC1   20000 perm   8 sec   (2595 perm/sec)   p_kst 8.317500e-01   p_cons 4.850000e-02   p_joint 2.407000e-01

Joint ci ratio: 4.694272e-02	ci left: 1.841540e-01	ci right 1.930398e-01	k: 5657	n:30000
Cons ci ratio: 1.007898e-01	ci left: 4.557572e-02	ci right 5.044562e-02	k: 1439	n:30000
KS ci ratio: 1.027192e-02	ci left: 8.248930e-01	ci right 8.334432e-01	k: 24876	n:30000
HERC1   30000 perm   12 sec   (2522 perm/sec)   p_kst 8.292000e-01   p_cons 4.796667e-02   p_joint 1.885667e-01

Joint ci ratio: 3.819949e-02	ci left: 2.044036e-01	ci right 2.123888e-01	k: 8335	n:40000
Cons ci ratio: 8.791397e-02	ci left: 4.526460e-02	ci right 4.945143e-02	k: 1893	n:40000
KS ci ratio: 8.848541e-03	ci left: 8.269884e-01	ci right 8.343635e-01	k: 33228	n:40000
HERC1   40000 perm   16 sec   (2478 perm/sec)   p_kst 8.307000e-01   p_cons 4.732500e-02   p_joint 2.083750e-01

Outputting figure to mutsig2_images.part000000000077/HERC1.11_14894_40000_0.8307_0.047325_0.20838.png
                gene_name: HERC1
               theta_stop: 0.088 
                    nperm: 40000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.047 
      ci_cons_bounds_left: 0.045 
     ci_cons_bounds_right: 0.049 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 12 percent done.
HEATR5B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.285909e-02	ci left: 8.969288e-01	ci right 9.086354e-01	k: 9029	n:10000
Cons ci ratio: 2.552671e-02	ci left: 6.931293e-01	ci right 7.111528e-01	k: 7022	n:10000
KS ci ratio: 2.055786e-02	ci left: 7.761063e-01	ci right 7.923278e-01	k: 7843	n:10000
HEATR5B   10000 perm   2 sec   (4081 perm/sec)   p_kst 7.843000e-01   p_cons 7.022000e-01   p_joint 9.029000e-01

Outputting figure to mutsig2_images.part000000000077/HEATR5B.10_6356_10000_0.7843_0.7022_0.9029.png
                gene_name: HEATR5B
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 14 percent done.
HECW2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.361463e-02	ci left: 5.664436e-01	ci right 5.859120e-01	k: 5762	n:10000
Cons ci ratio: 5.794040e-02	ci left: 3.048095e-01	ci right 3.230990e-01	k: 3139	n:10000
KS ci ratio: 3.775496e-02	ci left: 5.088528e-01	ci right 5.285363e-01	k: 5187	n:10000
HECW2   10000 perm   2 sec   (4064 perm/sec)   p_kst 5.187000e-01   p_cons 3.139000e-01   p_joint 5.762000e-01

Outputting figure to mutsig2_images.part000000000077/HECW2.9_4831_10000_0.5187_0.3139_0.5762.png
                gene_name: HECW2
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 16 percent done.
HEPHL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.940154e-01	ci left: 7.872887e-03	ci right 1.182054e-02	k: 97	n:10000
Cons ci ratio: 1.723172e-01	ci left: 4.494682e-02	ci right 5.351821e-02	k: 491	n:10000
KS ci ratio: 1.635851e-01	ci left: 4.984277e-02	ci right 5.881908e-02	k: 542	n:10000
HEPHL1   10000 perm   2 sec   (4709 perm/sec)   p_kst 5.420000e-02   p_cons 4.910000e-02   p_joint 9.700000e-03

Joint ci ratio: 1.760084e-01	ci left: 2.206683e-02	ci right 2.637302e-02	k: 483	n:20000
Cons ci ratio: 1.248127e-01	ci left: 4.405941e-02	ci right 4.997318e-02	k: 939	n:20000
KS ci ratio: 1.168165e-01	ci left: 5.017833e-02	ci right 5.645233e-02	k: 1065	n:20000
HEPHL1   20000 perm   5 sec   (4221 perm/sec)   p_kst 5.325000e-02   p_cons 4.695000e-02   p_joint 2.415000e-02

Joint ci ratio: 1.425090e-01	ci left: 2.284446e-02	ci right 2.638176e-02	k: 737	n:30000
Cons ci ratio: 9.878843e-02	ci left: 4.739802e-02	ci right 5.235628e-02	k: 1495	n:30000
KS ci ratio: 9.309663e-02	ci left: 5.319646e-02	ci right 5.842331e-02	k: 1673	n:30000
HEPHL1   30000 perm   7 sec   (4031 perm/sec)   p_kst 5.576667e-02   p_cons 4.983333e-02   p_joint 2.456667e-02

Joint ci ratio: 1.155858e-01	ci left: 2.633224e-02	ci right 2.958677e-02	k: 1117	n:40000
Cons ci ratio: 8.461278e-02	ci left: 4.876623e-02	ci right 5.309926e-02	k: 2036	n:40000
KS ci ratio: 8.056701e-02	ci left: 5.361945e-02	ci right 5.814529e-02	k: 2234	n:40000
HEPHL1   40000 perm   10 sec   (3924 perm/sec)   p_kst 5.585000e-02   p_cons 5.090000e-02   p_joint 2.792500e-02

Joint ci ratio: 1.231548e-01	ci left: 1.863562e-02	ci right 2.110057e-02	k: 992	n:50000
Cons ci ratio: 7.557465e-02	ci left: 4.912706e-02	ci right 5.300527e-02	k: 2552	n:50000
KS ci ratio: 7.268007e-02	ci left: 5.297827e-02	ci right 5.699360e-02	k: 2748	n:50000
HEPHL1   50000 perm   13 sec   (3856 perm/sec)   p_kst 5.496000e-02   p_cons 5.104000e-02   p_joint 1.984000e-02

Joint ci ratio: 1.026389e-01	ci left: 2.251386e-02	ci right 2.496584e-02	k: 1423	n:60000
Cons ci ratio: 6.852689e-02	ci left: 4.994168e-02	ci right 5.350184e-02	k: 3102	n:60000
KS ci ratio: 6.624992e-02	ci left: 5.330388e-02	ci right 5.697264e-02	k: 3307	n:60000
HEPHL1   60000 perm   16 sec   (3797 perm/sec)   p_kst 5.511667e-02   p_cons 5.170000e-02   p_joint 2.371667e-02

Joint ci ratio: 9.468524e-02	ci left: 2.276719e-02	ci right 2.504393e-02	k: 1672	n:70000
Cons ci ratio: 6.315138e-02	ci left: 5.052147e-02	ci right 5.383006e-02	k: 3651	n:70000
KS ci ratio: 6.105424e-02	ci left: 5.391379e-02	ci right 5.732317e-02	k: 3892	n:70000
HEPHL1   70000 perm   19 sec   (3745 perm/sec)   p_kst 5.560000e-02   p_cons 5.215714e-02   p_joint 2.388571e-02

Outputting figure to mutsig2_images.part000000000077/HEPHL1.8_3560_70000_0.0556_0.052157_0.023886.png
                gene_name: HEPHL1
               theta_stop: 0.095 
                    nperm: 70000 
                     p_ks: 0.056 
        ci_ks_bounds_left: 0.054 
       ci_ks_bounds_right: 0.057 
                   p_cons: 0.052 
      ci_cons_bounds_left: 0.051 
     ci_cons_bounds_right: 0.054 
                  p_joint: 0.024 
     ci_joint_bounds_left: 0.023 
    ci_joint_bounds_right: 0.025 

Current progress: 18 percent done.
HCFC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.540610e-02	ci left: 1.665170e-01	ci right 1.814734e-01	k: 1739	n:10000
Cons ci ratio: 1.657893e-02	ci left: 8.411177e-01	ci right 8.552788e-01	k: 8483	n:10000
KS ci ratio: 1.265054e-01	ci left: 8.203252e-02	ci right 9.320908e-02	k: 875	n:10000
HCFC2   10000 perm   2 sec   (5058 perm/sec)   p_kst 8.750000e-02   p_cons 8.483000e-01   p_joint 1.739000e-01

Joint ci ratio: 5.414501e-02	ci left: 2.019967e-01	ci right 2.132884e-01	k: 4152	n:20000
Cons ci ratio: 1.231778e-02	ci left: 8.298834e-01	ci right 8.402190e-01	k: 16702	n:20000
KS ci ratio: 9.100027e-02	ci left: 8.102361e-02	ci right 8.879757e-02	k: 1697	n:20000
HCFC2   20000 perm   4 sec   (4593 perm/sec)   p_kst 8.485000e-02   p_cons 8.351000e-01   p_joint 2.076000e-01

Outputting figure to mutsig2_images.part000000000077/HCFC2.7_2439_20000_0.08485_0.8351_0.2076.png
                gene_name: HCFC2
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.085 
        ci_ks_bounds_left: 0.081 
       ci_ks_bounds_right: 0.089 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 20 percent done.
HCN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.543320e-01	ci left: 5.590576e-02	ci right 6.535220e-02	k: 605	n:10000
Cons ci ratio: 2.631913e-01	ci left: 1.884073e-02	ci right 2.464254e-02	k: 216	n:10000
KS ci ratio: 8.710826e-02	ci left: 1.610145e-01	ci right 1.757792e-01	k: 1683	n:10000
HCN4   10000 perm   2 sec   (4648 perm/sec)   p_kst 1.683000e-01   p_cons 2.160000e-02   p_joint 6.050000e-02

Joint ci ratio: 1.123751e-01	ci left: 5.411849e-02	ci right 6.061095e-02	k: 1146	n:20000
Cons ci ratio: 1.858900e-01	ci left: 1.972547e-02	ci right 2.381521e-02	k: 434	n:20000
KS ci ratio: 6.254725e-02	ci left: 1.589912e-01	ci right 1.693067e-01	k: 3282	n:20000
HCN4   20000 perm   5 sec   (3857 perm/sec)   p_kst 1.641000e-01   p_cons 2.170000e-02   p_joint 5.730000e-02

Joint ci ratio: 8.311070e-02	ci left: 6.615712e-02	ci right 7.192668e-02	k: 2070	n:30000
Cons ci ratio: 1.508956e-01	ci left: 2.033780e-02	ci right 2.368899e-02	k: 659	n:30000
KS ci ratio: 4.955749e-02	ci left: 1.682729e-01	ci right 1.768573e-01	k: 5176	n:30000
HCN4   30000 perm   8 sec   (3764 perm/sec)   p_kst 1.725333e-01   p_cons 2.196667e-02   p_joint 6.900000e-02

Joint ci ratio: 8.136045e-02	ci left: 5.261406e-02	ci right 5.710083e-02	k: 2193	n:40000
Cons ci ratio: 1.304528e-01	ci left: 2.063321e-02	ci right 2.353675e-02	k: 882	n:40000
KS ci ratio: 4.281200e-02	ci left: 1.695524e-01	ci right 1.769951e-01	k: 6930	n:40000
HCN4   40000 perm   11 sec   (3732 perm/sec)   p_kst 1.732500e-01   p_cons 2.205000e-02   p_joint 5.482500e-02

Joint ci ratio: 6.816376e-02	ci left: 5.992137e-02	ci right 6.416965e-02	k: 3101	n:50000
Cons ci ratio: 1.158649e-01	ci left: 2.108184e-02	ci right 2.369402e-02	k: 1118	n:50000
KS ci ratio: 3.803433e-02	ci left: 1.718769e-01	ci right 1.785608e-01	k: 8760	n:50000
HCN4   50000 perm   14 sec   (3689 perm/sec)   p_kst 1.752000e-01   p_cons 2.236000e-02   p_joint 6.202000e-02

Joint ci ratio: 6.310976e-02	ci left: 5.850679e-02	ci right 6.233587e-02	k: 3624	n:60000
Cons ci ratio: 1.061668e-01	ci left: 2.103593e-02	ci right 2.341060e-02	k: 1332	n:60000
KS ci ratio: 3.478910e-02	ci left: 1.716030e-01	ci right 1.776952e-01	k: 10478	n:60000
HCN4   60000 perm   16 sec   (3645 perm/sec)   p_kst 1.746333e-01   p_cons 2.220000e-02   p_joint 6.040000e-02

Joint ci ratio: 6.128797e-02	ci left: 5.351956e-02	ci right 5.691743e-02	k: 3864	n:70000
Cons ci ratio: 9.868702e-02	ci left: 2.095396e-02	ci right 2.314305e-02	k: 1542	n:70000
KS ci ratio: 3.217579e-02	ci left: 1.721206e-01	ci right 1.777635e-01	k: 12245	n:70000
HCN4   70000 perm   19 sec   (3604 perm/sec)   p_kst 1.749286e-01   p_cons 2.202857e-02   p_joint 5.520000e-02

Outputting figure to mutsig2_images.part000000000077/HCN4.7_3644_70000_0.17493_0.022029_0.0552.png
                gene_name: HCN4
               theta_stop: 0.099 
                    nperm: 70000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.022 
      ci_cons_bounds_left: 0.021 
     ci_cons_bounds_right: 0.023 
                  p_joint: 0.055 
     ci_joint_bounds_left: 0.054 
    ci_joint_bounds_right: 0.057 

Current progress: 22 percent done.
HEG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.164532e-02	ci left: 4.598782e-01	ci right 4.795394e-01	k: 4697	n:10000
KS ci ratio: 1.613879e-02	ci left: 8.480476e-01	ci right 8.619449e-01	k: 8551	n:10000
HEG1   10000 perm   2 sec   (4576 perm/sec)   p_kst 8.551000e-01   p_cons 4.697000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000077/HEG1.7_4214_10000_0.8551_0.4697_1.png
                gene_name: HEG1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 24 percent done.
HELB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.178575e-01	ci left: 9.370045e-02	ci right 1.055340e-01	k: 995	n:10000
Cons ci ratio: 2.898406e-02	ci left: 6.370387e-01	ci right 6.558759e-01	k: 6465	n:10000
KS ci ratio: 1.966875e-01	ci left: 3.443296e-02	ci right 4.203907e-02	k: 381	n:10000
HELB   10000 perm   2 sec   (5000 perm/sec)   p_kst 3.810000e-02   p_cons 6.465000e-01   p_joint 9.950000e-02

Joint ci ratio: 7.708228e-02	ci left: 1.100691e-01	ci right 1.189433e-01	k: 2289	n:20000
Cons ci ratio: 2.049571e-02	ci left: 6.398287e-01	ci right 6.531287e-01	k: 12930	n:20000
KS ci ratio: 1.343100e-01	ci left: 3.810025e-02	ci right 4.363424e-02	k: 816	n:20000
HELB   20000 perm   4 sec   (4534 perm/sec)   p_kst 4.080000e-02   p_cons 6.465000e-01   p_joint 1.144500e-01

Joint ci ratio: 6.494042e-02	ci left: 1.047720e-01	ci right 1.118374e-01	k: 3248	n:30000
Cons ci ratio: 1.700307e-02	ci left: 6.337358e-01	ci right 6.446372e-01	k: 19176	n:30000
KS ci ratio: 1.093162e-01	ci left: 3.884897e-02	ci right 4.337378e-02	k: 1232	n:30000
HELB   30000 perm   7 sec   (4348 perm/sec)   p_kst 4.106667e-02   p_cons 6.392000e-01   p_joint 1.082667e-01

Joint ci ratio: 6.139093e-02	ci left: 8.965319e-02	ci right 9.535612e-02	k: 3699	n:40000
Cons ci ratio: 1.476513e-02	ci left: 6.332179e-01	ci right 6.426621e-01	k: 25518	n:40000
KS ci ratio: 9.524641e-02	ci left: 3.868680e-02	ci right 4.258024e-02	k: 1624	n:40000
HELB   40000 perm   9 sec   (4231 perm/sec)   p_kst 4.060000e-02   p_cons 6.379500e-01   p_joint 9.247500e-02

Outputting figure to mutsig2_images.part000000000077/HELB.7_3316_40000_0.0406_0.63795_0.092475.png
                gene_name: HELB
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.041 
        ci_ks_bounds_left: 0.039 
       ci_ks_bounds_right: 0.043 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.092 
     ci_joint_bounds_left: 0.090 
    ci_joint_bounds_right: 0.095 

Current progress: 27 percent done.
HELZ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.208325e-02	ci left: 5.891158e-01	ci right 6.084267e-01	k: 5988	n:10000
Cons ci ratio: 5.520517e-02	ci left: 3.258476e-01	ci right 3.444485e-01	k: 3351	n:10000
KS ci ratio: 3.522458e-02	ci left: 5.433915e-01	ci right 5.629775e-01	k: 5532	n:10000
HELZ   10000 perm   2 sec   (4344 perm/sec)   p_kst 5.532000e-01   p_cons 3.351000e-01   p_joint 5.988000e-01

Outputting figure to mutsig2_images.part000000000077/HELZ.7_5949_10000_0.5532_0.3351_0.5988.png
                gene_name: HELZ
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 29 percent done.
HDC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.363748e-02	ci left: 4.367232e-01	ci right 4.563080e-01	k: 4465	n:10000
Cons ci ratio: 7.124049e-02	ci left: 2.240520e-01	ci right 2.407042e-01	k: 2323	n:10000
KS ci ratio: 2.188344e-02	ci left: 7.539324e-01	ci right 7.707145e-01	k: 7624	n:10000
HDC   10000 perm   2 sec   (5337 perm/sec)   p_kst 7.624000e-01   p_cons 2.323000e-01   p_joint 4.465000e-01

Outputting figure to mutsig2_images.part000000000077/HDC.6_2037_10000_0.7624_0.2323_0.4465.png
                gene_name: HDC
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 31 percent done.
HDX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.312811e-02	ci left: 2.149717e-01	ci right 2.313898e-01	k: 2231	n:10000
Cons ci ratio: 1.141455e-02	ci left: 9.164670e-01	ci right 9.270857e-01	k: 9219	n:10000
KS ci ratio: 1.134190e-01	ci left: 1.006167e-01	ci right 1.128135e-01	k: 1066	n:10000
HDX   10000 perm   2 sec   (5544 perm/sec)   p_kst 1.066000e-01   p_cons 9.219000e-01   p_joint 2.231000e-01

Joint ci ratio: 5.427699e-02	ci left: 2.012049e-01	ci right 2.124805e-01	k: 4136	n:20000
Cons ci ratio: 8.181033e-03	ci left: 9.160516e-01	ci right 9.236258e-01	k: 18398	n:20000
KS ci ratio: 7.992864e-02	ci left: 1.030430e-01	ci right 1.116715e-01	k: 2146	n:20000
HDX   20000 perm   4 sec   (4971 perm/sec)   p_kst 1.073000e-01   p_cons 9.199000e-01   p_joint 2.068000e-01

Outputting figure to mutsig2_images.part000000000077/HDX.6_2109_20000_0.1073_0.9199_0.2068.png
                gene_name: HDX
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 33 percent done.
HEATR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.992248e-02	ci left: 6.222595e-01	ci right 6.412637e-01	k: 6318	n:10000
Cons ci ratio: 4.637034e-02	ci left: 4.070126e-01	ci right 4.264360e-01	k: 4167	n:10000
KS ci ratio: 3.043253e-02	ci left: 6.143208e-01	ci right 6.334069e-01	k: 6239	n:10000
HEATR1   10000 perm   2 sec   (4317 perm/sec)   p_kst 6.239000e-01   p_cons 4.167000e-01   p_joint 6.318000e-01

Outputting figure to mutsig2_images.part000000000077/HEATR1.6_6611_10000_0.6239_0.4167_0.6318.png
                gene_name: HEATR1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 35 percent done.
HEMGN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.228697e-02	ci left: 9.048375e-01	ci right 9.161220e-01	k: 9106	n:10000
KS ci ratio: 4.249072e-02	ci left: 4.498950e-01	ci right 4.695285e-01	k: 4597	n:10000
HEMGN   10000 perm   2 sec   (5298 perm/sec)   p_kst 4.597000e-01   p_cons 9.106000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000077/HEMGN.6_1471_10000_0.4597_0.9106_1.png
                gene_name: HEMGN
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 37 percent done.
HAUS6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.158161e-02	ci left: 2.223737e-01	ci right 2.389835e-01	k: 2306	n:10000
Cons ci ratio: 1.110452e-01	ci left: 1.046144e-01	ci right 1.170133e-01	k: 1107	n:10000
KS ci ratio: 4.060676e-02	ci left: 4.724627e-01	ci right 4.921476e-01	k: 4823	n:10000
HAUS6   10000 perm   2 sec   (5258 perm/sec)   p_kst 4.823000e-01   p_cons 1.107000e-01   p_joint 2.306000e-01

Joint ci ratio: 5.502411e-02	ci left: 1.968007e-01	ci right 2.079860e-01	k: 4047	n:20000
Cons ci ratio: 7.587147e-02	ci left: 1.132647e-01	ci right 1.222468e-01	k: 2354	n:20000
KS ci ratio: 2.894365e-02	ci left: 4.714055e-01	ci right 4.853007e-01	k: 9567	n:20000
HAUS6   20000 perm   4 sec   (4769 perm/sec)   p_kst 4.783500e-01   p_cons 1.177000e-01   p_joint 2.023500e-01

Outputting figure to mutsig2_images.part000000000077/HAUS6.5_2936_20000_0.47835_0.1177_0.20235.png
                gene_name: HAUS6
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 39 percent done.
HDAC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.013153e-01	ci left: 1.235648e-01	ci right 1.368514e-01	k: 1301	n:10000
Cons ci ratio: 3.634162e-01	ci left: 9.412543e-03	ci right 1.367914e-02	k: 114	n:10000
KS ci ratio: 1.543566e-02	ci left: 8.589625e-01	ci right 8.724236e-01	k: 8658	n:10000
HDAC4   10000 perm   2 sec   (5121 perm/sec)   p_kst 8.658000e-01   p_cons 1.140000e-02   p_joint 1.301000e-01

Joint ci ratio: 8.081697e-02	ci left: 1.009805e-01	ci right 1.095346e-01	k: 2104	n:20000
Cons ci ratio: 2.410476e-01	ci left: 1.147624e-02	ci right 1.466766e-02	k: 260	n:20000
KS ci ratio: 1.099812e-02	ci left: 8.591714e-01	ci right 8.687226e-01	k: 17280	n:20000
HDAC4   20000 perm   4 sec   (4638 perm/sec)   p_kst 8.640000e-01   p_cons 1.300000e-02   p_joint 1.052000e-01

Joint ci ratio: 6.415697e-02	ci left: 1.071050e-01	ci right 1.142373e-01	k: 3319	n:30000
Cons ci ratio: 1.870157e-01	ci left: 1.308242e-02	ci right 1.581280e-02	k: 432	n:30000
KS ci ratio: 9.538836e-03	ci left: 8.450664e-01	ci right 8.531992e-01	k: 25475	n:30000
HDAC4   30000 perm   7 sec   (4456 perm/sec)   p_kst 8.491667e-01   p_cons 1.440000e-02   p_joint 1.106333e-01

Joint ci ratio: 5.841080e-02	ci left: 9.823629e-02	ci right 1.041717e-01	k: 4047	n:40000
Cons ci ratio: 1.615828e-01	ci left: 1.332738e-02	ci right 1.569388e-02	k: 579	n:40000
KS ci ratio: 8.277442e-03	ci left: 8.451001e-01	ci right 8.521493e-01	k: 33946	n:40000
HDAC4   40000 perm   9 sec   (4332 perm/sec)   p_kst 8.486500e-01   p_cons 1.447500e-02   p_joint 1.011750e-01

Joint ci ratio: 4.923367e-02	ci left: 1.097429e-01	ci right 1.153022e-01	k: 5625	n:50000
Cons ci ratio: 1.454432e-01	ci left: 1.327762e-02	ci right 1.537932e-02	k: 715	n:50000
KS ci ratio: 7.419367e-03	ci left: 8.449238e-01	ci right 8.512358e-01	k: 42405	n:50000
HDAC4   50000 perm   12 sec   (4234 perm/sec)   p_kst 8.481000e-01   p_cons 1.430000e-02   p_joint 1.125000e-01

Joint ci ratio: 4.517509e-02	ci left: 1.089755e-01	ci right 1.140288e-01	k: 6689	n:60000
Cons ci ratio: 1.340591e-01	ci left: 1.310736e-02	ci right 1.500674e-02	k: 842	n:60000
KS ci ratio: 6.805722e-03	ci left: 8.439433e-01	ci right 8.497231e-01	k: 50811	n:60000
HDAC4   60000 perm   14 sec   (4139 perm/sec)   p_kst 8.468500e-01   p_cons 1.403333e-02   p_joint 1.114833e-01

Joint ci ratio: 4.470427e-02	ci left: 9.675460e-02	ci right 1.011930e-01	k: 6927	n:70000
Cons ci ratio: 1.238277e-01	ci left: 1.323962e-02	ci right 1.500100e-02	k: 987	n:70000
KS ci ratio: 6.339500e-03	ci left: 8.425565e-01	ci right 8.479291e-01	k: 59168	n:70000
HDAC4   70000 perm   17 sec   (4063 perm/sec)   p_kst 8.452571e-01   p_cons 1.410000e-02   p_joint 9.895714e-02

Joint ci ratio: 3.977576e-02	ci left: 1.061050e-01	ci right 1.104234e-01	k: 8660	n:80000
Cons ci ratio: 1.158378e-01	ci left: 1.329439e-02	ci right 1.494112e-02	k: 1128	n:80000
KS ci ratio: 5.944652e-03	ci left: 8.420834e-01	ci right 8.471166e-01	k: 67569	n:80000
HDAC4   80000 perm   20 sec   (3994 perm/sec)   p_kst 8.446125e-01   p_cons 1.410000e-02   p_joint 1.082500e-01

Joint ci ratio: 4.513731e-02	ci left: 7.557428e-02	ci right 7.907524e-02	k: 6958	n:90000
Cons ci ratio: 1.411235e-01	ci left: 7.899839e-03	ci right 9.109938e-03	k: 764	n:90000
KS ci ratio: 5.609674e-03	ci left: 8.419929e-01	ci right 8.467405e-01	k: 75994	n:90000
HDAC4   90000 perm   23 sec   (3936 perm/sec)   p_kst 8.443778e-01   p_cons 8.488889e-03   p_joint 7.731111e-02

Joint ci ratio: 4.439705e-02	ci left: 7.071215e-02	ci right 7.393271e-02	k: 7231	n:100000
Cons ci ratio: 1.317109e-01	ci left: 8.201406e-03	ci right 9.367354e-03	k: 877	n:100000
KS ci ratio: 5.331266e-03	ci left: 8.416455e-01	ci right 8.461545e-01	k: 84391	n:100000
HDAC4   100000 perm   26 sec   (3879 perm/sec)   p_kst 8.439100e-01   p_cons 8.770000e-03   p_joint 7.231000e-02

Joint ci ratio: 3.831442e-02	ci left: 8.522369e-02	ci right 8.856176e-02	k: 9557	n:110000
Cons ci ratio: 1.237713e-01	ci left: 8.476767e-03	ci right 9.603892e-03	k: 993	n:110000
KS ci ratio: 4.600033e-03	ci left: 8.664429e-01	ci right 8.704468e-01	k: 95530	n:110000
HDAC4   110000 perm   29 sec   (3825 perm/sec)   p_kst 8.684545e-01   p_cons 9.027273e-03   p_joint 8.688182e-02

Joint ci ratio: 3.720723e-02	ci left: 8.308920e-02	ci right 8.624757e-02	k: 10159	n:120000
Cons ci ratio: 1.177030e-01	ci left: 8.618990e-03	ci right 9.704929e-03	k: 1098	n:120000
KS ci ratio: 4.415996e-03	ci left: 8.659125e-01	ci right 8.697531e-01	k: 104141	n:120000
HDAC4   120000 perm   32 sec   (3771 perm/sec)   p_kst 8.678417e-01   p_cons 9.150000e-03   p_joint 8.465833e-02

Joint ci ratio: 3.546435e-02	ci left: 8.438216e-02	ci right 8.743634e-02	k: 11167	n:130000
Cons ci ratio: 1.126367e-01	ci left: 8.710561e-03	ci right 9.757660e-03	k: 1199	n:130000
KS ci ratio: 4.246220e-03	ci left: 8.657997e-01	ci right 8.694915e-01	k: 112795	n:130000
HDAC4   130000 perm   35 sec   (3720 perm/sec)   p_kst 8.676538e-01   p_cons 9.223077e-03   p_joint 8.590000e-02

Joint ci ratio: 3.394949e-02	ci left: 8.547197e-02	ci right 8.843087e-02	k: 12172	n:140000
Cons ci ratio: 1.088506e-01	ci left: 8.678697e-03	ci right 9.684646e-03	k: 1284	n:140000
KS ci ratio: 4.092461e-03	ci left: 8.658278e-01	ci right 8.693855e-01	k: 121466	n:140000
HDAC4   140000 perm   38 sec   (3660 perm/sec)   p_kst 8.676143e-01   p_cons 9.171429e-03   p_joint 8.694286e-02

Joint ci ratio: 3.305927e-02	ci left: 8.428150e-02	ci right 8.712121e-02	k: 12854	n:150000
Cons ci ratio: 1.052672e-01	ci left: 8.677564e-03	ci right 9.648218e-03	k: 1373	n:150000
KS ci ratio: 3.953362e-03	ci left: 8.659079e-01	ci right 8.693445e-01	k: 130145	n:150000
HDAC4   150000 perm   42 sec   (3613 perm/sec)   p_kst 8.676333e-01   p_cons 9.153333e-03   p_joint 8.569333e-02

Joint ci ratio: 3.312236e-02	ci left: 7.915898e-02	ci right 8.183124e-02	k: 12878	n:160000
Cons ci ratio: 1.017705e-01	ci left: 8.719692e-03	ci right 9.660722e-03	k: 1469	n:160000
KS ci ratio: 3.827754e-03	ci left: 8.659672e-01	ci right 8.692945e-01	k: 138822	n:160000
HDAC4   160000 perm   45 sec   (3566 perm/sec)   p_kst 8.676375e-01   p_cons 9.181250e-03   p_joint 8.048750e-02

Joint ci ratio: 3.128332e-02	ci left: 8.322872e-02	ci right 8.587958e-02	k: 14373	n:170000
Cons ci ratio: 9.879175e-02	ci left: 8.722904e-03	ci right 9.635129e-03	k: 1559	n:170000
KS ci ratio: 3.711408e-03	ci left: 8.661452e-01	ci right 8.693716e-01	k: 147520	n:170000
HDAC4   170000 perm   48 sec   (3521 perm/sec)   p_kst 8.677647e-01   p_cons 9.170588e-03   p_joint 8.454706e-02

Outputting figure to mutsig2_images.part000000000077/HDAC4.5_3359_170000_0.86776_0.0091706_0.084547.png
                gene_name: HDAC4
               theta_stop: 0.099 
                    nperm: 170000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.0092 
      ci_cons_bounds_left: 0.0087 
     ci_cons_bounds_right: 0.0096 
                  p_joint: 0.085 
     ci_joint_bounds_left: 0.083 
    ci_joint_bounds_right: 0.086 

Current progress: 41 percent done.
HECTD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.659312e-02	ci left: 6.755913e-01	ci right 6.939010e-01	k: 6848	n:10000
Cons ci ratio: 1.890004e-02	ci left: 8.035925e-01	ci right 8.190257e-01	k: 8114	n:10000
KS ci ratio: 2.998681e-02	ci left: 6.212544e-01	ci right 6.402693e-01	k: 6308	n:10000
HECTD1   10000 perm   2 sec   (4001 perm/sec)   p_kst 6.308000e-01   p_cons 8.114000e-01   p_joint 6.848000e-01

Outputting figure to mutsig2_images.part000000000077/HECTD1.5_8001_10000_0.6308_0.8114_0.6848.png
                gene_name: HECTD1
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.69 

Current progress: 43 percent done.
HELQ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.947207e-02	ci left: 7.941537e-01	ci right 8.098700e-01	k: 8021	n:10000
Cons ci ratio: 8.526847e-03	ci left: 9.506481e-01	ci right 9.588844e-01	k: 9549	n:10000
KS ci ratio: 2.541692e-02	ci left: 6.949445e-01	ci right 7.129366e-01	k: 7040	n:10000
HELQ   10000 perm   2 sec   (5380 perm/sec)   p_kst 7.040000e-01   p_cons 9.549000e-01   p_joint 8.021000e-01

Outputting figure to mutsig2_images.part000000000077/HELQ.5_3378_10000_0.704_0.9549_0.8021.png
                gene_name: HELQ
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 45 percent done.
HAVCR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.786111e-02	ci left: 3.917725e-01	ci right 4.110850e-01	k: 4014	n:10000
Cons ci ratio: 4.887162e-02	ci left: 3.818169e-01	ci right 4.010464e-01	k: 3914	n:10000
KS ci ratio: 5.357377e-02	ci left: 3.392554e-01	ci right 3.580328e-01	k: 3486	n:10000
HAVCR1   10000 perm   2 sec   (6052 perm/sec)   p_kst 3.486000e-01   p_cons 3.914000e-01   p_joint 4.014000e-01

Outputting figure to mutsig2_images.part000000000077/HAVCR1.4_1127_10000_0.3486_0.3914_0.4014.png
                gene_name: HAVCR1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 47 percent done.
HBD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.454048e-03	ci left: 9.782366e-01	ci right 9.836781e-01	k: 9811	n:10000
KS ci ratio: 2.225164e-02	ci left: 7.477617e-01	ci right 7.646888e-01	k: 7563	n:10000
HBD   10000 perm   2 sec   (6389 perm/sec)   p_kst 7.563000e-01   p_cons 9.811000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000077/HBD.4_456_10000_0.7563_0.9811_1.png
                gene_name: HBD
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 49 percent done.
HBE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.027820e-02	ci left: 7.807680e-01	ci right 7.968634e-01	k: 7889	n:10000
Cons ci ratio: 3.764171e-02	ci left: 5.103535e-01	ci right 5.300347e-01	k: 5202	n:10000
KS ci ratio: 3.152538e-02	ci left: 5.975480e-01	ci right 6.167896e-01	k: 6072	n:10000
HBE1   10000 perm   1 sec   (6735 perm/sec)   p_kst 6.072000e-01   p_cons 5.202000e-01   p_joint 7.889000e-01

Outputting figure to mutsig2_images.part000000000077/HBE1.4_456_10000_0.6072_0.5202_0.7889.png
                gene_name: HBE1
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 51 percent done.
HCK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.057000e-02	ci left: 7.759037e-01	ci right 7.921305e-01	k: 7841	n:10000
KS ci ratio: 1.350873e-02	ci left: 8.876989e-01	ci right 8.998707e-01	k: 8939	n:10000
HCK   10000 perm   2 sec   (5834 perm/sec)   p_kst 8.939000e-01   p_cons 7.841000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000077/HCK.4_1639_10000_0.8939_0.7841_1.png
                gene_name: HCK
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 53 percent done.
HEATR6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.707361e-02	ci left: 3.997400e-01	ci right 4.191128e-01	k: 4094	n:10000
Cons ci ratio: 7.004364e-02	ci left: 2.300756e-01	ci right 2.468770e-01	k: 2384	n:10000
KS ci ratio: 4.810093e-02	ci left: 3.893828e-01	ci right 4.086761e-01	k: 3990	n:10000
HEATR6   10000 perm   2 sec   (5132 perm/sec)   p_kst 3.990000e-01   p_cons 2.384000e-01   p_joint 4.094000e-01

Outputting figure to mutsig2_images.part000000000077/HEATR6.4_3626_10000_0.399_0.2384_0.4094.png
                gene_name: HEATR6
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 55 percent done.
HEPACAM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.835664e-02	ci left: 5.009505e-01	ci right 5.206432e-01	k: 5108	n:10000
Cons ci ratio: 8.549534e-02	ci left: 1.662222e-01	ci right 1.811684e-01	k: 1736	n:10000
KS ci ratio: 3.529587e-02	ci left: 5.423897e-01	ci right 5.619799e-01	k: 5522	n:10000
HEPACAM2   10000 perm   2 sec   (5099 perm/sec)   p_kst 5.522000e-01   p_cons 1.736000e-01   p_joint 5.108000e-01

Outputting figure to mutsig2_images.part000000000077/HEPACAM2.4_1472_10000_0.5522_0.1736_0.5108.png
                gene_name: HEPACAM2
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 57 percent done.
HAUS5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.839503e-02	ci left: 5.004505e-01	ci right 5.201435e-01	k: 5103	n:10000
Cons ci ratio: 2.526458e-02	ci left: 6.974658e-01	ci right 7.154138e-01	k: 7065	n:10000
KS ci ratio: 7.045098e-02	ci left: 2.280016e-01	ci right 2.447522e-01	k: 2363	n:10000
HAUS5   10000 perm   2 sec   (5925 perm/sec)   p_kst 2.363000e-01   p_cons 7.065000e-01   p_joint 5.103000e-01

Outputting figure to mutsig2_images.part000000000077/HAUS5.3_1978_10000_0.2363_0.7065_0.5103.png
                gene_name: HAUS5
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 59 percent done.
HAX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.500759e-02	ci left: 3.274362e-01	ci right 3.460590e-01	k: 3367	n:10000
Cons ci ratio: 5.986431e-02	ci left: 2.910276e-01	ci right 3.090890e-01	k: 3000	n:10000
KS ci ratio: 5.662210e-02	ci left: 3.147305e-01	ci right 3.331722e-01	k: 3239	n:10000
HAX1   10000 perm   2 sec   (6282 perm/sec)   p_kst 3.239000e-01   p_cons 3.000000e-01   p_joint 3.367000e-01

Outputting figure to mutsig2_images.part000000000077/HAX1.3_868_10000_0.3239_0.3_0.3367.png
                gene_name: HAX1
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 61 percent done.
HBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.347678e-01	ci left: 7.272051e-02	ci right 8.332686e-02	k: 779	n:10000
Cons ci ratio: 3.289058e-02	ci left: 5.770748e-01	ci right 5.964746e-01	k: 5868	n:10000
KS ci ratio: 1.660239e-01	ci left: 4.840157e-02	ci right 5.726121e-02	k: 527	n:10000
HBP1   10000 perm   2 sec   (6330 perm/sec)   p_kst 5.270000e-02   p_cons 5.868000e-01   p_joint 7.790000e-02

Joint ci ratio: 6.200576e-02	ci left: 1.613609e-01	ci right 1.717363e-01	k: 3330	n:20000
Cons ci ratio: 2.258850e-02	ci left: 5.940738e-01	ci right 6.076969e-01	k: 12018	n:20000
KS ci ratio: 1.147282e-01	ci left: 5.197757e-02	ci right 5.835254e-02	k: 1102	n:20000
HBP1   20000 perm   4 sec   (5624 perm/sec)   p_kst 5.510000e-02   p_cons 6.009000e-01   p_joint 1.665000e-01

Joint ci ratio: 6.150109e-02	ci left: 1.155866e-01	ci right 1.229540e-01	k: 3577	n:30000
Cons ci ratio: 1.910593e-02	ci left: 5.782643e-01	ci right 5.894528e-01	k: 17516	n:30000
KS ci ratio: 9.306719e-02	ci left: 5.322906e-02	ci right 5.845737e-02	k: 1674	n:30000
HBP1   30000 perm   6 sec   (5351 perm/sec)   p_kst 5.580000e-02   p_cons 5.838667e-01   p_joint 1.192333e-01

Outputting figure to mutsig2_images.part000000000077/HBP1.3_1585_30000_0.0558_0.58387_0.11923.png
                gene_name: HBP1
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.056 
        ci_ks_bounds_left: 0.053 
       ci_ks_bounds_right: 0.058 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 63 percent done.
HCLS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.271018e-02	ci left: 7.400768e-01	ci right 7.571782e-01	k: 7487	n:10000
Cons ci ratio: 5.468661e-03	ci left: 9.781297e-01	ci right 9.835850e-01	k: 9810	n:10000
KS ci ratio: 3.986605e-02	ci left: 4.816553e-01	ci right 5.013497e-01	k: 4915	n:10000
HCLS1   10000 perm   2 sec   (6250 perm/sec)   p_kst 4.915000e-01   p_cons 9.810000e-01   p_joint 7.487000e-01

Outputting figure to mutsig2_images.part000000000077/HCLS1.3_1513_10000_0.4915_0.981_0.7487.png
                gene_name: HCLS1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 65 percent done.
HCN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.176252e-02	ci left: 4.584803e-01	ci right 4.781381e-01	k: 4683	n:10000
Cons ci ratio: 2.345856e-02	ci left: 7.275456e-01	ci right 7.449166e-01	k: 7363	n:10000
KS ci ratio: 5.425286e-02	ci left: 3.335933e-01	ci right 3.522982e-01	k: 3429	n:10000
HCN3   10000 perm   2 sec   (6300 perm/sec)   p_kst 3.429000e-01   p_cons 7.363000e-01   p_joint 4.683000e-01

Outputting figure to mutsig2_images.part000000000077/HCN3.3_2357_10000_0.3429_0.7363_0.4683.png
                gene_name: HCN3
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 67 percent done.
HCRTR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.133735e-02	ci left: 4.635730e-01	ci right 4.832425e-01	k: 4734	n:10000
Cons ci ratio: 3.528161e-02	ci left: 5.425901e-01	ci right 5.621794e-01	k: 5524	n:10000
KS ci ratio: 7.822696e-02	ci left: 1.927894e-01	ci right 2.085854e-01	k: 2006	n:10000
HCRTR2   10000 perm   2 sec   (6350 perm/sec)   p_kst 2.006000e-01   p_cons 5.524000e-01   p_joint 4.734000e-01

Outputting figure to mutsig2_images.part000000000077/HCRTR2.3_1363_10000_0.2006_0.5524_0.4734.png
                gene_name: HCRTR2
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 69 percent done.
HEATR4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.844278e-02	ci left: 2.384731e-01	ci right 2.554745e-01	k: 2469	n:10000
Cons ci ratio: 1.009147e-01	ci left: 1.244452e-01	ci right 1.377705e-01	k: 1310	n:10000
KS ci ratio: 5.710380e-02	ci left: 3.110592e-01	ci right 3.294457e-01	k: 3202	n:10000
HEATR4   10000 perm   2 sec   (5632 perm/sec)   p_kst 3.202000e-01   p_cons 1.310000e-01   p_joint 2.469000e-01

Joint ci ratio: 5.699038e-02	ci left: 1.858196e-01	ci right 1.967703e-01	k: 3825	n:20000
Cons ci ratio: 7.467253e-02	ci left: 1.165597e-01	ci right 1.256508e-01	k: 2421	n:20000
KS ci ratio: 4.031372e-02	ci left: 3.144814e-01	ci right 3.274707e-01	k: 6419	n:20000
HEATR4   20000 perm   4 sec   (5042 perm/sec)   p_kst 3.209500e-01   p_cons 1.210500e-01   p_joint 1.912500e-01

Outputting figure to mutsig2_images.part000000000077/HEATR4.3_3004_20000_0.32095_0.12105_0.19125.png
                gene_name: HEATR4
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 71 percent done.
HEATR5A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.608005e-02	ci left: 2.516216e-01	ci right 2.689183e-01	k: 2602	n:10000
Cons ci ratio: 1.090626e-01	ci left: 1.081269e-01	ci right 1.206987e-01	k: 1143	n:10000
KS ci ratio: 2.199211e-02	ci left: 7.521113e-01	ci right 7.689367e-01	k: 7606	n:10000
HEATR5A   10000 perm   2 sec   (4732 perm/sec)   p_kst 7.606000e-01   p_cons 1.143000e-01   p_joint 2.602000e-01

Joint ci ratio: 3.721627e-02	ci left: 3.501072e-01	ci right 3.634345e-01	k: 7135	n:20000
Cons ci ratio: 7.715840e-02	ci left: 1.098725e-01	ci right 1.187399e-01	k: 2285	n:20000
KS ci ratio: 1.581545e-02	ci left: 7.483728e-01	ci right 7.603532e-01	k: 15088	n:20000
HEATR5A   20000 perm   5 sec   (4287 perm/sec)   p_kst 7.544000e-01   p_cons 1.142500e-01   p_joint 3.567500e-01

Outputting figure to mutsig2_images.part000000000077/HEATR5A.3_5382_20000_0.7544_0.11425_0.35675.png
                gene_name: HEATR5A
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 73 percent done.
HEPACAM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.495415e-02	ci left: 8.663151e-01	ci right 8.794668e-01	k: 8730	n:10000
Cons ci ratio: 1.994913e-02	ci left: 7.862424e-01	ci right 8.021858e-01	k: 7943	n:10000
KS ci ratio: 3.617512e-02	ci left: 5.301711e-01	ci right 5.498056e-01	k: 5400	n:10000
HEPACAM   10000 perm   2 sec   (6310 perm/sec)   p_kst 5.400000e-01   p_cons 7.943000e-01   p_joint 8.730000e-01

Outputting figure to mutsig2_images.part000000000077/HEPACAM.3_1279_10000_0.54_0.7943_0.873.png
                gene_name: HEPACAM
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 76 percent done.
HAUS8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.692518e-02	ci left: 8.356181e-01	ci right 8.499816e-01	k: 8429	n:10000
Cons ci ratio: 6.345683e-02	ci left: 2.673539e-01	ci right 2.849767e-01	k: 2761	n:10000
KS ci ratio: 5.588080e-02	ci left: 3.204868e-01	ci right 3.390125e-01	k: 3297	n:10000
HAUS8   10000 perm   2 sec   (6594 perm/sec)   p_kst 3.297000e-01   p_cons 2.761000e-01   p_joint 8.429000e-01

Outputting figure to mutsig2_images.part000000000077/HAUS8.2_1277_10000_0.3297_0.2761_0.8429.png
                gene_name: HAUS8
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 78 percent done.
HAVCR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.235422e-02	ci left: 7.460424e-01	ci right 7.630091e-01	k: 7546	n:10000
KS ci ratio: 1.668823e-02	ci left: 8.393860e-01	ci right 8.536115e-01	k: 8466	n:10000
HAVCR2   10000 perm   1 sec   (6818 perm/sec)   p_kst 8.466000e-01   p_cons 7.546000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000077/HAVCR2.2_934_10000_0.8466_0.7546_1.png
                gene_name: HAVCR2
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
HBB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.515566e-02	ci left: 3.262447e-01	ci right 3.448511e-01	k: 3355	n:10000
KS ci ratio: 2.599742e-02	ci left: 6.853663e-01	ci right 7.035203e-01	k: 6945	n:10000
HBB   10000 perm   1 sec   (7151 perm/sec)   p_kst 6.945000e-01   p_cons 3.355000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000077/HBB.2_456_10000_0.6945_0.3355_1.png
                gene_name: HBB
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
HBS1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.978118e-02	ci left: 6.244707e-01	ci right 6.434512e-01	k: 6340	n:10000
Cons ci ratio: 9.995174e-02	ci left: 1.265977e-01	ci right 1.400167e-01	k: 1332	n:10000
KS ci ratio: 6.627059e-03	ci left: 9.688927e-01	ci right 9.754284e-01	k: 9723	n:10000
HBS1L   10000 perm   2 sec   (5382 perm/sec)   p_kst 9.723000e-01   p_cons 1.332000e-01   p_joint 6.340000e-01

Outputting figure to mutsig2_images.part000000000077/HBS1L.2_3600_10000_0.9723_0.1332_0.634.png
                gene_name: HBS1L
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 84 percent done.
HCN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.701956e-02	ci left: 2.462819e-01	ci right 2.634612e-01	k: 2548	n:10000
KS ci ratio: 5.552876e-02	ci left: 3.232663e-01	ci right 3.418313e-01	k: 3325	n:10000
HCN2   10000 perm   2 sec   (5789 perm/sec)   p_kst 3.325000e-01   p_cons 2.548000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000077/HCN2.2_2702_10000_0.3325_0.2548_1.png
                gene_name: HCN2
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
HDAC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.108542e-02	ci left: 7.672937e-01	ci right 7.837455e-01	k: 7756	n:10000
KS ci ratio: 5.356197e-02	ci left: 3.393548e-01	ci right 3.581334e-01	k: 3487	n:10000
HDAC1   10000 perm   2 sec   (6304 perm/sec)   p_kst 3.487000e-01   p_cons 7.756000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000077/HDAC1.2_1505_10000_0.3487_0.7756_1.png
                gene_name: HDAC1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
HDGF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.718632e-02	ci left: 8.314445e-01	ci right 8.459577e-01	k: 8388	n:10000
Cons ci ratio: 5.168237e-02	ci left: 3.556540e-01	ci right 3.746246e-01	k: 3651	n:10000
KS ci ratio: 6.356810e-02	ci left: 2.666610e-01	ci right 2.842700e-01	k: 2754	n:10000
HDGF   10000 perm   2 sec   (6655 perm/sec)   p_kst 2.754000e-01   p_cons 3.651000e-01   p_joint 8.388000e-01

Outputting figure to mutsig2_images.part000000000077/HDGF.2_956_10000_0.2754_0.3651_0.8388.png
                gene_name: HDGF
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 90 percent done.
HDLBP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.414779e-02	ci left: 8.783802e-01	ci right 8.909947e-01	k: 8848	n:10000
Cons ci ratio: 5.173814e-02	ci left: 3.551569e-01	ci right 3.741220e-01	k: 3646	n:10000
KS ci ratio: 2.873724e-02	ci left: 6.409613e-01	ci right 6.597510e-01	k: 6504	n:10000
HDLBP   10000 perm   2 sec   (5354 perm/sec)   p_kst 6.504000e-01   p_cons 3.646000e-01   p_joint 8.848000e-01

Outputting figure to mutsig2_images.part000000000077/HDLBP.2_3911_10000_0.6504_0.3646_0.8848.png
                gene_name: HDLBP
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 92 percent done.
HEATR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.548895e-02	ci left: 5.396851e-01	ci right 5.592861e-01	k: 5495	n:10000
KS ci ratio: 4.117193e-02	ci left: 4.655704e-01	ci right 4.852439e-01	k: 4754	n:10000
HEATR3   10000 perm   2 sec   (6086 perm/sec)   p_kst 4.754000e-01   p_cons 5.495000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000077/HEATR3.2_2103_10000_0.4754_0.5495_1.png
                gene_name: HEATR3
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
HEBP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.325683e-01	ci left: 7.504646e-02	ci right 8.579947e-02	k: 803	n:10000
Cons ci ratio: 8.075213e-02	ci left: 1.829427e-01	ci right 1.984379e-01	k: 1906	n:10000
KS ci ratio: 1.058498e-01	ci left: 1.141806e-01	ci right 1.270413e-01	k: 1205	n:10000
HEBP2   10000 perm   1 sec   (6733 perm/sec)   p_kst 1.205000e-01   p_cons 1.906000e-01   p_joint 8.030000e-02

Joint ci ratio: 5.248244e-02	ci left: 2.123436e-01	ci right 2.238385e-01	k: 4361	n:20000
Cons ci ratio: 5.647981e-02	ci left: 1.885890e-01	ci right 1.996001e-01	k: 3881	n:20000
KS ci ratio: 7.448022e-02	ci left: 1.171008e-01	ci right 1.262095e-01	k: 2432	n:20000
HEBP2   20000 perm   3 sec   (5991 perm/sec)   p_kst 1.216000e-01   p_cons 1.940500e-01   p_joint 2.180500e-01

Outputting figure to mutsig2_images.part000000000077/HEBP2.2_634_20000_0.1216_0.19405_0.21805.png
                gene_name: HEBP2
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 96 percent done.
HECA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.933629e-02	ci left: 3.773383e-01	ci right 3.965276e-01	k: 3869	n:10000
Cons ci ratio: 7.743137e-02	ci left: 1.960405e-01	ci right 2.119323e-01	k: 2039	n:10000
KS ci ratio: 1.146865e-01	ci left: 9.857012e-02	ci right 1.106613e-01	k: 1045	n:10000
HECA   10000 perm   2 sec   (6595 perm/sec)   p_kst 1.045000e-01   p_cons 2.039000e-01   p_joint 3.869000e-01

Joint ci ratio: 3.952265e-02	ci left: 3.231352e-01	ci right 3.362143e-01	k: 6593	n:20000
Cons ci ratio: 5.513513e-02	ci left: 1.961575e-01	ci right 2.073294e-01	k: 4034	n:20000
KS ci ratio: 7.955555e-02	ci left: 1.039271e-01	ci right 1.125872e-01	k: 2164	n:20000
HECA   20000 perm   3 sec   (5913 perm/sec)   p_kst 1.082000e-01   p_cons 2.017000e-01   p_joint 3.296500e-01

Outputting figure to mutsig2_images.part000000000077/HECA.2_1648_20000_0.1082_0.2017_0.32965.png
                gene_name: HECA
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 98 percent done.
HECTD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.824960e-01	ci left: 4.006355e-02	ci right 4.820470e-02	k: 440	n:10000
Cons ci ratio: 2.198857e-01	ci left: 2.740624e-02	ci right 3.427066e-02	k: 307	n:10000
KS ci ratio: 2.878995e-01	ci left: 1.557819e-02	ci right 2.090773e-02	k: 181	n:10000
HECTD3   10000 perm   2 sec   (5769 perm/sec)   p_kst 1.810000e-02   p_cons 3.070000e-02   p_joint 4.400000e-02

Joint ci ratio: 1.260847e-01	ci left: 4.318641e-02	ci right 4.904646e-02	k: 921	n:20000
Cons ci ratio: 1.525718e-01	ci left: 2.950774e-02	ci right 3.442957e-02	k: 638	n:20000
KS ci ratio: 2.067861e-01	ci left: 1.582303e-02	ci right 1.951911e-02	k: 352	n:20000
HECTD3   20000 perm   4 sec   (5163 perm/sec)   p_kst 1.760000e-02   p_cons 3.190000e-02   p_joint 4.605000e-02

Joint ci ratio: 1.446328e-01	ci left: 2.216905e-02	ci right 2.565733e-02	k: 716	n:30000
Cons ci ratio: 1.269551e-01	ci left: 2.884147e-02	ci right 3.278342e-02	k: 923	n:30000
KS ci ratio: 1.670048e-01	ci left: 1.652569e-02	ci right 1.956867e-02	k: 540	n:30000
HECTD3   30000 perm   6 sec   (4921 perm/sec)   p_kst 1.800000e-02   p_cons 3.076667e-02   p_joint 2.386667e-02

Joint ci ratio: 1.257285e-01	ci left: 2.223148e-02	ci right 2.523821e-02	k: 948	n:40000
Cons ci ratio: 1.112580e-01	ci left: 2.842294e-02	ci right 3.179574e-02	k: 1203	n:40000
KS ci ratio: 1.434540e-01	ci left: 1.700905e-02	ci right 1.966153e-02	k: 732	n:40000
HECTD3   40000 perm   8 sec   (4766 perm/sec)   p_kst 1.830000e-02   p_cons 3.007500e-02   p_joint 2.370000e-02

Joint ci ratio: 1.312779e-01	ci left: 1.636874e-02	ci right 1.868776e-02	k: 875	n:50000
Cons ci ratio: 9.954651e-02	ci left: 2.858065e-02	ci right 3.159424e-02	k: 1503	n:50000
KS ci ratio: 1.275494e-01	ci left: 1.735627e-02	ci right 1.974009e-02	k: 926	n:50000
HECTD3   50000 perm   11 sec   (4648 perm/sec)   p_kst 1.852000e-02   p_cons 3.006000e-02   p_joint 1.750000e-02

Joint ci ratio: 1.326302e-01	ci left: 1.339748e-02	ci right 1.531658e-02	k: 860	n:60000
Cons ci ratio: 8.999785e-02	ci left: 2.926890e-02	ci right 3.204341e-02	k: 1838	n:60000
KS ci ratio: 1.172117e-01	ci left: 1.722635e-02	ci right 1.938727e-02	k: 1097	n:60000
HECTD3   60000 perm   13 sec   (4549 perm/sec)   p_kst 1.828333e-02   p_cons 3.063333e-02   p_joint 1.433333e-02

Joint ci ratio: 1.159805e-01	ci left: 1.512508e-02	ci right 1.700106e-02	k: 1123	n:70000
Cons ci ratio: 8.385767e-02	ci left: 2.900056e-02	ci right 3.155286e-02	k: 2118	n:70000
KS ci ratio: 1.075378e-01	ci left: 1.762588e-02	ci right 1.964287e-02	k: 1303	n:70000
HECTD3   70000 perm   16 sec   (4457 perm/sec)   p_kst 1.861429e-02   p_cons 3.025714e-02   p_joint 1.604286e-02

Joint ci ratio: 1.167324e-01	ci left: 1.308799e-02	ci right 1.472254e-02	k: 1111	n:80000
Cons ci ratio: 7.885764e-02	ci left: 2.877969e-02	ci right 3.115456e-02	k: 2396	n:80000
KS ci ratio: 1.004650e-01	ci left: 1.773596e-02	ci right 1.962417e-02	k: 1493	n:80000
HECTD3   80000 perm   18 sec   (4373 perm/sec)   p_kst 1.866250e-02   p_cons 2.995000e-02   p_joint 1.388750e-02

Joint ci ratio: 1.024346e-01	ci left: 1.519032e-02	ci right 1.684109e-02	k: 1440	n:90000
Cons ci ratio: 7.424315e-02	ci left: 2.892786e-02	ci right 3.116923e-02	k: 2703	n:90000
KS ci ratio: 9.479839e-02	ci left: 1.775986e-02	ci right 1.953803e-02	k: 1677	n:90000
HECTD3   90000 perm   21 sec   (4295 perm/sec)   p_kst 1.863333e-02   p_cons 3.003333e-02   p_joint 1.600000e-02

Joint ci ratio: 9.730512e-02	ci left: 1.519233e-02	ci right 1.675593e-02	k: 1596	n:100000
Cons ci ratio: 7.057196e-02	ci left: 2.887273e-02	ci right 3.099465e-02	k: 2992	n:100000
KS ci ratio: 9.006779e-02	ci left: 1.775204e-02	ci right 1.943605e-02	k: 1858	n:100000
HECTD3   100000 perm   24 sec   (4223 perm/sec)   p_kst 1.858000e-02   p_cons 2.992000e-02   p_joint 1.596000e-02

Outputting figure to mutsig2_images.part000000000077/HECTD3.2_2670_100000_0.01858_0.02992_0.01596.png
                gene_name: HECTD3
               theta_stop: 0.097 
                    nperm: 100000 
                     p_ks: 0.019 
        ci_ks_bounds_left: 0.018 
       ci_ks_bounds_right: 0.019 
                   p_cons: 0.030 
      ci_cons_bounds_left: 0.029 
     ci_cons_bounds_right: 0.031 
                  p_joint: 0.016 
     ci_joint_bounds_left: 0.015 
    ci_joint_bounds_right: 0.017 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000077
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 77 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1641>
Subject: Job 8004151: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1641>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000078> was used as the working directory.
Started at Sun Nov 11 15:06:40 2012
Results reported at Sun Nov 11 15:21:05 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000078.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000078.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 78  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000078.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    911.44 sec.
    Max Memory :      4670 MB
    Max Swap   :      7068 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
78
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 78
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 78: processing genes 6967 - 7057
Calculating significance of each gene.
Using projection method.
6967	HERC2	1.000000e+00
6968	HERC3	1
6969	HERC4	8.977562e-01
6970	HERC5	9.488755e-02
6971	HERC6	1.159735e-01
6972	HERPUD1	7.179218e-01
6973	HERPUD2	5.818501e-01
6974	HES1	1
6975	HES3	1
6976	HES4	1
6977	HES5	1
6978	HES6	1
6979	HES7	1
6980	HESX1	1
6981	HEXA	1.114979e-01
6982	HEXB	1
6983	HEXDC	6.039258e-01
6984	HEXIM1	1
6985	HEXIM2	5.644722e-01
6986	HEY1	1
6987	HEY2	4.911183e-01
6988	HEYL	1
6989	HFE	6.208004e-01
6990	HFE2	1.601048e-01
6991	HFM1	9.964121e-01
6992	HGD	1.625753e-01
6993	HGF	1.473237e-01
6994	HGFAC	1
6995	HGS	6.137702e-01
6996	HGSNAT	8.139156e-01
6997	HHAT	7.982548e-01
6998	HHATL	1
6999	HHEX	1
7000/18094 7000	HHIP	4.848510e-01
7001	HHIPL1	5.982087e-01
7002	HHIPL2	2.603973e-02
7003	HHLA2	1.211977e-01
7004	HHLA3	1.880767e-01
7005	HIAT1	1
7006	HIATL1	8.087006e-01
7007	HIBADH	5.896605e-01
7008	HIBCH	6.877106e-01
7009	HIC1	1
7010	HIC2	8.788179e-01
7011	HIF1A	9.038349e-01
7012	HIF1AN	1
7013	HIF3A	6.805527e-01
7014	HIGD1A	1.734331e-01
7015	HIGD1B	1.113539e-01
7016	HIGD1C	2.507269e-01
7017	HIGD2A	1
7018	HINFP	4.672466e-01
7019	HINT1	1
7020	HINT2	3.266219e-01
7021	HINT3	1
7022	HIP1	8.416286e-01
7023	HIP1R	1
7024	HIPK1	9.882010e-01
7025	HIPK2	8.649947e-01
7026	HIPK3	1
7027	HIPK4	6.313981e-01
7028	HIRA	9.671937e-01
7029	HIRIP3	3.946671e-01
7030	HIST1H1A	1
7031	HIST1H1B	1
7032	HIST1H1C	1
7033	HIST1H1D	4.843374e-01
7034	HIST1H1E	1.119973e-01
7035	HIST1H1T	3.043327e-01
7036	HIST1H2AA	2.809842e-02
7037	HIST1H2AB	3.824063e-01
7038	HIST1H2AC	2.192132e-01
7039	HIST1H2AD	1
7040	HIST1H2AE	1.274519e-01
7041	HIST1H2AG	1.760964e-01
7042	HIST1H2AH	3.497910e-02
7043	HIST1H2AI	1
7044	HIST1H2AJ	1
7045	HIST1H2AK	1.158514e-02
7046	HIST1H2AL	4.459977e-01
7047	HIST1H2AM	1.939734e-02
7048	HIST1H2BA	2.967543e-01
7049	HIST1H2BB	1
7050	HIST1H2BC	2.579031e-01
7051	HIST1H2BD	1
7052	HIST1H2BE	1
7053	HIST1H2BF	1.363634e-03
7054	HIST1H2BG	5.474145e-02
7055	HIST1H2BH	2.999130e-02
7056	HIST1H2BI	4.608984e-02
7057	HIST1H2BJ	1.419884e-01
Done

Running MutSig 2:
Scatter job 78: processing genes 6967 - 7057
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
HERC2
Processing conservation and coverage...
67% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.436336e-03	ci left: 9.406618e-01	ci right 9.496766e-01	k: 9453	n:10000
Cons ci ratio: 1.066901e-02	ci left: 9.259590e-01	ci right 9.359882e-01	k: 9311	n:10000
KS ci ratio: 1.141455e-02	ci left: 9.164670e-01	ci right 9.270857e-01	k: 9219	n:10000
HERC2   10000 perm   4 sec   (2697 perm/sec)   p_kst 9.219000e-01   p_cons 9.311000e-01   p_joint 9.453000e-01

Outputting figure to mutsig2_images.part000000000078/HERC2.25_14873_10000_0.9219_0.9311_0.9453.png
                gene_name: HERC2
               theta_stop: 0.011 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 3 percent done.
HGF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.684207e-02	ci left: 8.369418e-01	ci right 8.512571e-01	k: 8442	n:10000
Cons ci ratio: 3.716947e-02	ci left: 5.166574e-01	ci right 5.363271e-01	k: 5265	n:10000
KS ci ratio: 4.073706e-02	ci left: 4.708643e-01	ci right 4.905469e-01	k: 4807	n:10000
HGF   10000 perm   2 sec   (5022 perm/sec)   p_kst 4.807000e-01   p_cons 5.265000e-01   p_joint 8.442000e-01

Outputting figure to mutsig2_images.part000000000078/HGF.10_2279_10000_0.4807_0.5265_0.8442.png
                gene_name: HGF
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 6 percent done.
HHIPL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.468960e-02	ci left: 1.393291e-01	ci right 1.532776e-01	k: 1462	n:10000
Cons ci ratio: 8.643025e-02	ci left: 1.631759e-01	ci right 1.780165e-01	k: 1705	n:10000
KS ci ratio: 7.825135e-02	ci left: 1.926909e-01	ci right 2.084839e-01	k: 2005	n:10000
HHIPL2   10000 perm   2 sec   (5224 perm/sec)   p_kst 2.005000e-01   p_cons 1.705000e-01   p_joint 1.462000e-01

Outputting figure to mutsig2_images.part000000000078/HHIPL2.9_2211_10000_0.2005_0.1705_0.1462.png
                gene_name: HHIPL2
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 8 percent done.
HERC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.060498e-01	ci left: 1.137899e-01	ci right 1.266323e-01	k: 1201	n:10000
Cons ci ratio: 6.251794e-02	ci left: 2.732942e-01	ci right 2.910328e-01	k: 2821	n:10000
KS ci ratio: 9.480348e-02	ci left: 1.390351e-01	ci right 1.529718e-01	k: 1459	n:10000
HERC5   10000 perm   2 sec   (4935 perm/sec)   p_kst 1.459000e-01   p_cons 2.821000e-01   p_joint 1.201000e-01

Joint ci ratio: 7.084650e-02	ci left: 1.280270e-01	ci right 1.374801e-01	k: 2654	n:20000
Cons ci ratio: 4.388738e-02	ci left: 2.788498e-01	ci right 2.914128e-01	k: 5702	n:20000
KS ci ratio: 6.658401e-02	ci left: 1.427599e-01	ci right 1.526427e-01	k: 2953	n:20000
HERC5   20000 perm   4 sec   (4481 perm/sec)   p_kst 1.476500e-01   p_cons 2.851000e-01   p_joint 1.327000e-01

Outputting figure to mutsig2_images.part000000000078/HERC5.6_3167_20000_0.14765_0.2851_0.1327.png
                gene_name: HERC5
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 11 percent done.
HERC6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.089973e-02	ci left: 9.230676e-01	ci right 9.332812e-01	k: 9283	n:10000
Cons ci ratio: 5.140488e-02	ci left: 3.581397e-01	ci right 3.771375e-01	k: 3676	n:10000
KS ci ratio: 2.429303e-02	ci left: 7.136100e-01	ci right 7.312602e-01	k: 7225	n:10000
HERC6   10000 perm   2 sec   (5027 perm/sec)   p_kst 7.225000e-01   p_cons 3.676000e-01   p_joint 9.283000e-01

Outputting figure to mutsig2_images.part000000000078/HERC6.6_2958_10000_0.7225_0.3676_0.9283.png
                gene_name: HERC6
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 14 percent done.
HIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.316256e-02	ci left: 5.730625e-01	ci right 5.924892e-01	k: 5828	n:10000
Cons ci ratio: 6.126117e-02	ci left: 2.815149e-01	ci right 2.994073e-01	k: 2904	n:10000
KS ci ratio: 3.916278e-02	ci left: 4.905513e-01	ci right 5.102485e-01	k: 5004	n:10000
HIP1   10000 perm   2 sec   (5203 perm/sec)   p_kst 5.004000e-01   p_cons 2.904000e-01   p_joint 5.828000e-01

Outputting figure to mutsig2_images.part000000000078/HIP1.6_3238_10000_0.5004_0.2904_0.5828.png
                gene_name: HIP1
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 17 percent done.
HERC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.105432e-02	ci left: 9.211069e-01	ci right 9.314431e-01	k: 9264	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
HERC3   10000 perm   2 sec   (5036 perm/sec)   p_kst 1   p_cons 9.264000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000078/HERC3.5_3249_10000_1_0.9264_1.png
                gene_name: HERC3
               theta_stop: 0.011 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 19 percent done.
HEXA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.742576e-02	ci left: 3.961543e-01	ci right 4.155006e-01	k: 4058	n:10000
Cons ci ratio: 2.513674e-02	ci left: 6.995839e-01	ci right 7.174944e-01	k: 7086	n:10000
KS ci ratio: 6.432495e-02	ci left: 2.620092e-01	ci right 2.795245e-01	k: 2707	n:10000
HEXA   10000 perm   2 sec   (5790 perm/sec)   p_kst 2.707000e-01   p_cons 7.086000e-01   p_joint 4.058000e-01

Outputting figure to mutsig2_images.part000000000078/HEXA.5_1646_10000_0.2707_0.7086_0.4058.png
                gene_name: HEXA
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 22 percent done.
HFM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.367280e-02	ci left: 4.363242e-01	ci right 4.559072e-01	k: 4461	n:10000
Cons ci ratio: 2.412956e-02	ci left: 7.163357e-01	ci right 7.339330e-01	k: 7252	n:10000
KS ci ratio: 6.723193e-02	ci left: 2.450955e-01	ci right 2.622482e-01	k: 2536	n:10000
HFM1   10000 perm   2 sec   (4572 perm/sec)   p_kst 2.536000e-01   p_cons 7.252000e-01   p_joint 4.461000e-01

Outputting figure to mutsig2_images.part000000000078/HFM1.5_4460_10000_0.2536_0.7252_0.4461.png
                gene_name: HFM1
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 25 percent done.
HFE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.353717e-02	ci left: 8.872890e-01	ci right 8.994808e-01	k: 8935	n:10000
KS ci ratio: 1.152503e-02	ci left: 9.150246e-01	ci right 9.257290e-01	k: 9205	n:10000
HFE2   10000 perm   2 sec   (5713 perm/sec)   p_kst 9.205000e-01   p_cons 8.935000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000078/HFE2.4_1293_10000_0.9205_0.8935_1.png
                gene_name: HFE2
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 28 percent done.
HGD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.004187e-02	ci left: 4.794567e-01	ci right 4.991495e-01	k: 4893	n:10000
KS ci ratio: 7.989211e-03	ci left: 9.561821e-01	ci right 9.639469e-01	k: 9602	n:10000
HGD   10000 perm   2 sec   (5809 perm/sec)   p_kst 9.602000e-01   p_cons 4.893000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000078/HGD.4_1394_10000_0.9602_0.4893_1.png
                gene_name: HGD
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 31 percent done.
HHLA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.209850e-01	ci left: 8.922438e-02	ci right 1.008128e-01	k: 949	n:10000
Cons ci ratio: 2.339773e-01	ci left: 2.410011e-02	ci right 3.057918e-02	k: 272	n:10000
KS ci ratio: 4.962867e-02	ci left: 3.745520e-01	ci right 3.937155e-01	k: 3841	n:10000
HHLA2   10000 perm   2 sec   (5913 perm/sec)   p_kst 3.841000e-01   p_cons 2.720000e-02   p_joint 9.490000e-02

Joint ci ratio: 7.590801e-02	ci left: 1.131663e-01	ci right 1.221451e-01	k: 2352	n:20000
Cons ci ratio: 1.758224e-01	ci left: 2.211467e-02	ci right 2.642516e-02	k: 484	n:20000
KS ci ratio: 3.485274e-02	ci left: 3.806403e-01	ci right 3.941925e-01	k: 7748	n:20000
HHLA2   20000 perm   4 sec   (5271 perm/sec)   p_kst 3.874000e-01   p_cons 2.420000e-02   p_joint 1.176000e-01

Joint ci ratio: 7.467094e-02	ci left: 8.098314e-02	ci right 8.729767e-02	k: 2523	n:30000
Cons ci ratio: 1.284692e-01	ci left: 2.816320e-02	ci right 3.206184e-02	k: 902	n:30000
KS ci ratio: 2.835841e-02	ci left: 3.835440e-01	ci right 3.946108e-01	k: 11672	n:30000
HHLA2   30000 perm   6 sec   (5033 perm/sec)   p_kst 3.890667e-01   p_cons 3.006667e-02   p_joint 8.410000e-02

Joint ci ratio: 6.530844e-02	ci left: 7.992021e-02	ci right 8.534057e-02	k: 3304	n:40000
Cons ci ratio: 1.232885e-01	ci left: 2.312831e-02	ci right 2.619122e-02	k: 985	n:40000
KS ci ratio: 2.460952e-02	ci left: 3.833201e-01	ci right 3.928961e-01	k: 15524	n:40000
HHLA2   40000 perm   8 sec   (4861 perm/sec)   p_kst 3.881000e-01   p_cons 2.462500e-02   p_joint 8.260000e-02

Joint ci ratio: 6.296514e-02	ci left: 6.967036e-02	ci right 7.421949e-02	k: 3596	n:50000
Cons ci ratio: 1.108972e-01	ci left: 2.302638e-02	ci right 2.574922e-02	k: 1218	n:50000
KS ci ratio: 2.199589e-02	ci left: 3.841644e-01	ci right 3.927285e-01	k: 19422	n:50000
HHLA2   50000 perm   11 sec   (4732 perm/sec)   p_kst 3.884400e-01   p_cons 2.436000e-02   p_joint 7.192000e-02

Joint ci ratio: 5.520636e-02	ci left: 7.537267e-02	ci right 7.966830e-02	k: 4650	n:60000
Cons ci ratio: 1.006302e-01	ci left: 2.342402e-02	ci right 2.592225e-02	k: 1479	n:60000
KS ci ratio: 2.010661e-02	ci left: 3.838984e-01	ci right 3.917124e-01	k: 23268	n:60000
HHLA2   60000 perm   13 sec   (4621 perm/sec)   p_kst 3.878000e-01   p_cons 2.465000e-02   p_joint 7.750000e-02

Joint ci ratio: 5.795699e-02	ci left: 5.956223e-02	ci right 6.313138e-02	k: 4293	n:70000
Cons ci ratio: 9.274421e-02	ci left: 2.373035e-02	ci right 2.605212e-02	k: 1741	n:70000
KS ci ratio: 1.861519e-02	ci left: 3.841880e-01	ci right 3.914213e-01	k: 27146	n:70000
HHLA2   70000 perm   15 sec   (4536 perm/sec)   p_kst 3.878000e-01   p_cons 2.487143e-02   p_joint 6.132857e-02

Outputting figure to mutsig2_images.part000000000078/HHLA2.4_1277_70000_0.3878_0.024871_0.061329.png
                gene_name: HHLA2
               theta_stop: 0.093 
                    nperm: 70000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.025 
      ci_cons_bounds_left: 0.024 
     ci_cons_bounds_right: 0.026 
                  p_joint: 0.061 
     ci_joint_bounds_left: 0.060 
    ci_joint_bounds_right: 0.063 

Current progress: 33 percent done.
HIF3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.081773e-02	ci left: 9.241000e-01	ci right 9.342483e-01	k: 9293	n:10000
KS ci ratio: 1.455385e-02	ci left: 8.723452e-01	ci right 8.852332e-01	k: 8789	n:10000
HIF3A   10000 perm   2 sec   (5390 perm/sec)   p_kst 8.789000e-01   p_cons 9.293000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000078/HIF3A.4_2094_10000_0.8789_0.9293_1.png
                gene_name: HIF3A
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 36 percent done.
HIPK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.530929e-02	ci left: 8.609022e-01	ci right 8.742829e-01	k: 8677	n:10000
KS ci ratio: 5.320867e-03	ci left: 9.791993e-01	ci right 9.845147e-01	k: 9820	n:10000
HIPK1   10000 perm   2 sec   (5147 perm/sec)   p_kst 9.820000e-01   p_cons 8.677000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000078/HIPK1.4_3795_10000_0.982_0.8677_1.png
                gene_name: HIPK1
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 39 percent done.
HIST1H2BF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.910019e-02	ci left: 4.913511e-01	ci right 5.110482e-01	k: 5012	n:10000
Cons ci ratio: 4.943000e-02	ci left: 3.764427e-01	ci right 3.956238e-01	k: 3860	n:10000
KS ci ratio: 6.450458e-02	ci left: 2.609207e-01	ci right 2.784136e-01	k: 2696	n:10000
HIST1H2BF   10000 perm   2 sec   (6194 perm/sec)   p_kst 2.696000e-01   p_cons 3.860000e-01   p_joint 5.012000e-01

Outputting figure to mutsig2_images.part000000000078/HIST1H2BF.4_385_10000_0.2696_0.386_0.5012.png
                gene_name: HIST1H2BF
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 42 percent done.
HGS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.063072e-02	ci left: 7.748905e-01	ci right 7.911443e-01	k: 7831	n:10000
KS ci ratio: 2.333176e-02	ci left: 7.296672e-01	ci right 7.469937e-01	k: 7384	n:10000
HGS   10000 perm   2 sec   (5689 perm/sec)   p_kst 7.384000e-01   p_cons 7.831000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000078/HGS.3_2422_10000_0.7384_0.7831_1.png
                gene_name: HGS
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 44 percent done.
HHIP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.377672e-03	ci left: 9.710070e-01	ci right 9.773127e-01	k: 9743	n:10000
Cons ci ratio: 1.118333e-02	ci left: 9.194566e-01	ci right 9.298944e-01	k: 9248	n:10000
KS ci ratio: 2.925720e-02	ci left: 6.327145e-01	ci right 6.516026e-01	k: 6422	n:10000
HHIP   10000 perm   2 sec   (5663 perm/sec)   p_kst 6.422000e-01   p_cons 9.248000e-01   p_joint 9.743000e-01

Outputting figure to mutsig2_images.part000000000078/HHIP.3_2155_10000_0.6422_0.9248_0.9743.png
                gene_name: HHIP
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 47 percent done.
HINFP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.679107e-02	ci left: 5.217618e-01	ci right 5.414198e-01	k: 5316	n:10000
Cons ci ratio: 7.120058e-02	ci left: 2.242494e-01	ci right 2.409066e-01	k: 2325	n:10000
KS ci ratio: 1.639181e-02	ci left: 8.440725e-01	ci right 8.581223e-01	k: 8512	n:10000
HINFP   10000 perm   2 sec   (6093 perm/sec)   p_kst 8.512000e-01   p_cons 2.325000e-01   p_joint 5.316000e-01

Outputting figure to mutsig2_images.part000000000078/HINFP.3_1590_10000_0.8512_0.2325_0.5316.png
                gene_name: HINFP
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 50 percent done.
HIPK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.215005e-02	ci left: 5.881121e-01	ci right 6.074309e-01	k: 5978	n:10000
Cons ci ratio: 3.190330e-02	ci left: 5.918258e-01	ci right 6.111151e-01	k: 6015	n:10000
KS ci ratio: 4.641806e-02	ci left: 4.065144e-01	ci right 4.259345e-01	k: 4162	n:10000
HIPK2   10000 perm   2 sec   (5276 perm/sec)   p_kst 4.162000e-01   p_cons 6.015000e-01   p_joint 5.978000e-01

Outputting figure to mutsig2_images.part000000000078/HIPK2.3_3657_10000_0.4162_0.6015_0.5978.png
                gene_name: HIPK2
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 53 percent done.
HIRA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.602876e-01	ci left: 5.549202e-03	ci right 8.947365e-03	k: 71	n:10000
Cons ci ratio: 4.023926e-01	ci left: 7.512676e-03	ci right 1.138119e-02	k: 93	n:10000
KS ci ratio: 2.537862e-01	ci left: 2.033901e-02	ci right 2.634310e-02	k: 232	n:10000
HIRA   10000 perm   2 sec   (4080 perm/sec)   p_kst 2.320000e-02   p_cons 9.300000e-03   p_joint 7.100000e-03

Joint ci ratio: 2.757897e-01	ci left: 8.621064e-03	ci right 1.142415e-02	k: 199	n:20000
Cons ci ratio: 2.684301e-01	ci left: 9.133859e-03	ci right 1.201110e-02	k: 210	n:20000
KS ci ratio: 1.749006e-01	ci left: 2.235394e-02	ci right 2.668581e-02	k: 489	n:20000
HIRA   20000 perm   5 sec   (4172 perm/sec)   p_kst 2.445000e-02   p_cons 1.050000e-02   p_joint 9.950000e-03

Joint ci ratio: 1.844395e-01	ci left: 1.346407e-02	ci right 1.623106e-02	k: 444	n:30000
Cons ci ratio: 2.240543e-01	ci left: 8.968019e-03	ci right 1.126168e-02	k: 302	n:30000
KS ci ratio: 1.369063e-01	ci left: 2.477622e-02	ci right 2.844956e-02	k: 797	n:30000
HIRA   30000 perm   7 sec   (4014 perm/sec)   p_kst 2.656667e-02   p_cons 1.006667e-02   p_joint 1.480000e-02

Joint ci ratio: 1.742065e-01	ci left: 1.141029e-02	ci right 1.361132e-02	k: 499	n:40000
Cons ci ratio: 1.904966e-01	ci left: 9.476622e-03	ci right 1.149539e-02	k: 418	n:40000
KS ci ratio: 1.174358e-01	ci left: 2.550637e-02	ci right 2.871277e-02	k: 1083	n:40000
HIRA   40000 perm   10 sec   (4038 perm/sec)   p_kst 2.707500e-02   p_cons 1.045000e-02   p_joint 1.247500e-02

Joint ci ratio: 1.680899e-01	ci left: 9.855008e-03	ci right 1.168246e-02	k: 537	n:50000
Cons ci ratio: 1.710055e-01	ci left: 9.510141e-03	ci right 1.130738e-02	k: 519	n:50000
KS ci ratio: 1.063770e-01	ci left: 2.503177e-02	ci right 2.786357e-02	k: 1321	n:50000
HIRA   50000 perm   12 sec   (4022 perm/sec)   p_kst 2.642000e-02   p_cons 1.038000e-02   p_joint 1.074000e-02

Joint ci ratio: 1.641360e-01	ci left: 8.643348e-03	ci right 1.020466e-02	k: 564	n:60000
Cons ci ratio: 1.567420e-01	ci left: 9.507549e-03	ci right 1.114034e-02	k: 618	n:60000
KS ci ratio: 9.756437e-02	ci left: 2.492027e-02	ci right 2.749250e-02	k: 1571	n:60000
HIRA   60000 perm   15 sec   (3987 perm/sec)   p_kst 2.618333e-02   p_cons 1.030000e-02   p_joint 9.400000e-03

Joint ci ratio: 1.567311e-01	ci left: 8.162601e-03	ci right 9.564280e-03	k: 619	n:70000
Cons ci ratio: 1.462619e-01	ci left: 9.413798e-03	ci right 1.091294e-02	k: 710	n:70000
KS ci ratio: 9.042848e-02	ci left: 2.495940e-02	ci right 2.733724e-02	k: 1829	n:70000
HIRA   70000 perm   18 sec   (3944 perm/sec)   p_kst 2.612857e-02   p_cons 1.014286e-02   p_joint 8.842857e-03

Joint ci ratio: 1.208195e-01	ci left: 1.220226e-02	ci right 1.378335e-02	k: 1038	n:80000
Cons ci ratio: 1.377236e-01	ci left: 9.334159e-03	ci right 1.072672e-02	k: 801	n:80000
KS ci ratio: 8.495233e-02	ci left: 2.482255e-02	ci right 2.703702e-02	k: 2073	n:80000
HIRA   80000 perm   21 sec   (3900 perm/sec)   p_kst 2.591250e-02   p_cons 1.001250e-02   p_joint 1.297500e-02

Joint ci ratio: 1.141016e-01	ci left: 1.220534e-02	ci right 1.369296e-02	k: 1164	n:90000
Cons ci ratio: 1.302304e-01	ci left: 9.317217e-03	ci right 1.062577e-02	k: 896	n:90000
KS ci ratio: 8.031058e-02	ci left: 2.475220e-02	ci right 2.683407e-02	k: 2320	n:90000
HIRA   90000 perm   23 sec   (3857 perm/sec)   p_kst 2.577778e-02   p_cons 9.955556e-03   p_joint 1.293333e-02

Joint ci ratio: 1.097791e-01	ci left: 1.189839e-02	ci right 1.329010e-02	k: 1258	n:100000
Cons ci ratio: 1.239037e-01	ci left: 9.295619e-03	ci right 1.053306e-02	k: 990	n:100000
KS ci ratio: 7.640078e-02	ci left: 2.466914e-02	ci right 2.663851e-02	k: 2564	n:100000
HIRA   100000 perm   26 sec   (3810 perm/sec)   p_kst 2.564000e-02   p_cons 9.900000e-03   p_joint 1.258000e-02

Joint ci ratio: 1.027670e-01	ci left: 1.238322e-02	ci right 1.373354e-02	k: 1435	n:110000
Cons ci ratio: 1.178704e-01	ci left: 9.367458e-03	ci right 1.054950e-02	k: 1094	n:110000
KS ci ratio: 7.297150e-02	ci left: 2.462999e-02	ci right 2.650423e-02	k: 2811	n:110000
HIRA   110000 perm   29 sec   (3761 perm/sec)   p_kst 2.555455e-02   p_cons 9.945455e-03   p_joint 1.304545e-02

Joint ci ratio: 1.061264e-01	ci left: 1.064471e-02	ci right 1.184575e-02	k: 1348	n:120000
Cons ci ratio: 1.125930e-01	ci left: 9.436641e-03	ci right 1.057056e-02	k: 1199	n:120000
KS ci ratio: 6.953572e-02	ci left: 2.490212e-02	ci right 2.670423e-02	k: 3095	n:120000
HIRA   120000 perm   32 sec   (3710 perm/sec)   p_kst 2.579167e-02   p_cons 9.991667e-03   p_joint 1.123333e-02

Joint ci ratio: 1.654409e-01	ci left: 3.944181e-03	ci right 4.662822e-03	k: 558	n:130000
Cons ci ratio: 1.081339e-01	ci left: 9.466234e-03	ci right 1.055579e-02	k: 1300	n:130000
KS ci ratio: 6.687945e-02	ci left: 2.488440e-02	ci right 2.661377e-02	k: 3346	n:130000
HIRA   130000 perm   35 sec   (3664 perm/sec)   p_kst 2.573846e-02   p_cons 1.000000e-02   p_joint 4.292308e-03

Joint ci ratio: 1.594228e-01	ci left: 3.957116e-03	ci right 4.649376e-03	k: 601	n:140000
Cons ci ratio: 1.041658e-01	ci left: 9.492358e-03	ci right 1.054237e-02	k: 1401	n:140000
KS ci ratio: 6.435931e-02	ci left: 2.498283e-02	ci right 2.665117e-02	k: 3613	n:140000
HIRA   140000 perm   39 sec   (3617 perm/sec)   p_kst 2.580714e-02   p_cons 1.000714e-02   p_joint 4.292857e-03

Joint ci ratio: 1.530667e-01	ci left: 4.020028e-03	ci right 4.692685e-03	k: 652	n:150000
Cons ci ratio: 9.996840e-02	ci left: 9.639152e-03	ci right 1.065992e-02	k: 1521	n:150000
KS ci ratio: 6.217820e-02	ci left: 2.501011e-02	ci right 2.662162e-02	k: 3871	n:150000
HIRA   150000 perm   42 sec   (3572 perm/sec)   p_kst 2.580667e-02   p_cons 1.014000e-02   p_joint 4.346667e-03

Joint ci ratio: 1.403777e-01	ci left: 4.509431e-03	ci right 5.196201e-03	k: 775	n:160000
Cons ci ratio: 9.680807e-02	ci left: 9.652426e-03	ci right 1.064045e-02	k: 1622	n:160000
KS ci ratio: 6.021227e-02	ci left: 2.502865e-02	ci right 2.658859e-02	k: 4128	n:160000
HIRA   160000 perm   45 sec   (3528 perm/sec)   p_kst 2.580000e-02   p_cons 1.013750e-02   p_joint 4.843750e-03

Joint ci ratio: 1.446740e-01	ci left: 3.988823e-03	ci right 4.616502e-03	k: 730	n:170000
Cons ci ratio: 9.390216e-02	ci left: 9.670332e-03	ci right 1.062884e-02	k: 1724	n:170000
KS ci ratio: 5.860719e-02	ci left: 2.488917e-02	ci right 2.639766e-02	k: 4358	n:170000
HIRA   170000 perm   49 sec   (3482 perm/sec)   p_kst 2.563529e-02   p_cons 1.014118e-02   p_joint 4.294118e-03

Joint ci ratio: 1.410561e-01	ci left: 3.970785e-03	ci right 4.578685e-03	k: 768	n:180000
Cons ci ratio: 9.096691e-02	ci left: 9.746375e-03	ci right 1.068061e-02	k: 1837	n:180000
KS ci ratio: 5.699660e-02	ci left: 2.487524e-02	ci right 2.634009e-02	k: 4608	n:180000
HIRA   180000 perm   52 sec   (3437 perm/sec)   p_kst 2.560000e-02   p_cons 1.020556e-02   p_joint 4.266667e-03

Joint ci ratio: 1.371856e-01	ci left: 3.985317e-03	ci right 4.577333e-03	k: 812	n:190000
Cons ci ratio: 8.847417e-02	ci left: 9.773646e-03	ci right 1.068350e-02	k: 1942	n:190000
KS ci ratio: 5.552949e-02	ci left: 2.484772e-02	ci right 2.627207e-02	k: 4855	n:190000
HIRA   190000 perm   56 sec   (3396 perm/sec)   p_kst 2.555263e-02   p_cons 1.022105e-02   p_joint 4.273684e-03

Joint ci ratio: 1.324579e-01	ci left: 4.071115e-03	ci right 4.653395e-03	k: 871	n:200000
Cons ci ratio: 8.651784e-02	ci left: 9.720214e-03	ci right 1.060407e-02	k: 2031	n:200000
KS ci ratio: 5.392125e-02	ci left: 2.505036e-02	ci right 2.644344e-02	k: 5148	n:200000
HIRA   200000 perm   60 sec   (3357 perm/sec)   p_kst 2.574000e-02   p_cons 1.015500e-02   p_joint 4.355000e-03

Joint ci ratio: 1.295931e-01	ci left: 4.056877e-03	ci right 4.623605e-03	k: 910	n:210000
Cons ci ratio: 8.442478e-02	ci left: 9.732682e-03	ci right 1.059521e-02	k: 2133	n:210000
KS ci ratio: 5.262900e-02	ci left: 2.506029e-02	ci right 2.641951e-02	k: 5404	n:210000
HIRA   210000 perm   63 sec   (3316 perm/sec)   p_kst 2.573333e-02   p_cons 1.015714e-02   p_joint 4.333333e-03

Joint ci ratio: 1.286871e-01	ci left: 3.929639e-03	ci right 4.474461e-03	k: 923	n:220000
Cons ci ratio: 8.238362e-02	ci left: 9.766513e-03	ci right 1.061010e-02	k: 2240	n:220000
KS ci ratio: 5.148613e-02	ci left: 2.501134e-02	ci right 2.633756e-02	k: 5647	n:220000
HIRA   220000 perm   67 sec   (3275 perm/sec)   p_kst 2.566818e-02   p_cons 1.018182e-02   p_joint 4.195455e-03

Joint ci ratio: 1.261869e-01	ci left: 3.914524e-03	ci right 4.445917e-03	k: 960	n:230000
Cons ci ratio: 8.084977e-02	ci left: 9.708151e-03	ci right 1.053035e-02	k: 2326	n:230000
KS ci ratio: 5.043658e-02	ci left: 2.494546e-02	ci right 2.624045e-02	k: 5885	n:230000
HIRA   230000 perm   71 sec   (3237 perm/sec)   p_kst 2.558696e-02   p_cons 1.011304e-02   p_joint 4.173913e-03

Joint ci ratio: 1.240142e-01	ci left: 3.888649e-03	ci right 4.406772e-03	k: 994	n:240000
Cons ci ratio: 7.916682e-02	ci left: 9.711976e-03	ci right 1.051659e-02	k: 2426	n:240000
KS ci ratio: 4.941145e-02	ci left: 2.492238e-02	ci right 2.618912e-02	k: 6132	n:240000
HIRA   240000 perm   75 sec   (3199 perm/sec)   p_kst 2.555000e-02   p_cons 1.010833e-02   p_joint 4.141667e-03

Joint ci ratio: 1.493514e-01	ci left: 2.542727e-03	ci right 2.956934e-03	k: 686	n:250000
Cons ci ratio: 7.747644e-02	ci left: 9.743120e-03	ci right 1.053230e-02	k: 2533	n:250000
KS ci ratio: 4.848149e-02	ci left: 2.486581e-02	ci right 2.610522e-02	k: 6370	n:250000
HIRA   250000 perm   79 sec   (3164 perm/sec)   p_kst 2.548000e-02   p_cons 1.013200e-02   p_joint 2.744000e-03

Joint ci ratio: 1.467066e-01	ci left: 2.537522e-03	ci right 2.942920e-03	k: 711	n:260000
Cons ci ratio: 7.588991e-02	ci left: 9.772036e-03	ci right 1.054663e-02	k: 2640	n:260000
KS ci ratio: 4.754679e-02	ci left: 2.487083e-02	ci right 2.608593e-02	k: 6623	n:260000
HIRA   260000 perm   83 sec   (3129 perm/sec)   p_kst 2.547308e-02   p_cons 1.015385e-02   p_joint 2.734615e-03

Joint ci ratio: 1.177365e-01	ci left: 3.848076e-03	ci right 4.333034e-03	k: 1103	n:270000
Cons ci ratio: 7.442438e-02	ci left: 9.791692e-03	ci right 1.055221e-02	k: 2745	n:270000
KS ci ratio: 4.660160e-02	ci left: 2.494160e-02	ci right 2.613528e-02	k: 6894	n:270000
HIRA   270000 perm   87 sec   (3093 perm/sec)   p_kst 2.553333e-02   p_cons 1.016667e-02   p_joint 4.085185e-03

Joint ci ratio: 1.155080e-01	ci left: 3.859738e-03	ci right 4.336331e-03	k: 1146	n:280000
Cons ci ratio: 7.300181e-02	ci left: 9.820599e-03	ci right 1.056816e-02	k: 2853	n:280000
KS ci ratio: 4.582560e-02	ci left: 2.488392e-02	ci right 2.605450e-02	k: 7130	n:280000
HIRA   280000 perm   92 sec   (3059 perm/sec)   p_kst 2.546429e-02   p_cons 1.018929e-02   p_joint 4.092857e-03

Joint ci ratio: 1.391887e-01	ci left: 2.537697e-03	ci right 2.920624e-03	k: 790	n:290000
Cons ci ratio: 7.162117e-02	ci left: 9.857801e-03	ci right 1.059342e-02	k: 2964	n:290000
KS ci ratio: 4.496826e-02	ci left: 2.495998e-02	ci right 2.611160e-02	k: 7404	n:290000
HIRA   290000 perm   96 sec   (3024 perm/sec)   p_kst 2.553103e-02   p_cons 1.022069e-02   p_joint 2.724138e-03

Joint ci ratio: 1.114516e-01	ci left: 3.877717e-03	ci right 4.338610e-03	k: 1231	n:300000
Cons ci ratio: 7.050150e-02	ci left: 9.840244e-03	ci right 1.056260e-02	k: 3059	n:300000
KS ci ratio: 4.419274e-02	ci left: 2.499159e-02	ci right 2.612427e-02	k: 7666	n:300000
HIRA   300000 perm   100 sec   (2991 perm/sec)   p_kst 2.555333e-02   p_cons 1.019667e-02   p_joint 4.103333e-03

Joint ci ratio: 1.094696e-01	ci left: 3.893782e-03	ci right 4.347823e-03	k: 1276	n:310000
Cons ci ratio: 6.943275e-02	ci left: 9.823904e-03	ci right 1.053369e-02	k: 3154	n:310000
KS ci ratio: 4.344477e-02	ci left: 2.503408e-02	ci right 2.614900e-02	k: 7932	n:310000
HIRA   310000 perm   105 sec   (2959 perm/sec)   p_kst 2.558710e-02   p_cons 1.017419e-02   p_joint 4.116129e-03

Joint ci ratio: 1.075081e-01	ci left: 3.914993e-03	ci right 4.362810e-03	k: 1323	n:320000
Cons ci ratio: 6.836868e-02	ci left: 9.820950e-03	ci right 1.051921e-02	k: 3253	n:320000
KS ci ratio: 4.281936e-02	ci left: 2.497511e-02	ci right 2.607100e-02	k: 8166	n:320000
HIRA   320000 perm   109 sec   (2927 perm/sec)   p_kst 2.551875e-02   p_cons 1.016562e-02   p_joint 4.134375e-03

Joint ci ratio: 1.061157e-01	ci left: 3.899582e-03	ci right 4.339499e-03	k: 1358	n:330000
Cons ci ratio: 6.740287e-02	ci left: 9.803356e-03	ci right 1.049014e-02	k: 3347	n:330000
KS ci ratio: 4.219444e-02	ci left: 2.494982e-02	ci right 2.602823e-02	k: 8410	n:330000
HIRA   330000 perm   114 sec   (2896 perm/sec)   p_kst 2.548485e-02   p_cons 1.014242e-02   p_joint 4.115152e-03

Joint ci ratio: 1.052318e-01	ci left: 3.850743e-03	ci right 4.281307e-03	k: 1381	n:340000
Cons ci ratio: 6.652569e-02	ci left: 9.772398e-03	ci right 1.044776e-02	k: 3436	n:340000
KS ci ratio: 4.164303e-02	ci left: 2.487081e-02	ci right 2.593142e-02	k: 8635	n:340000
HIRA   340000 perm   119 sec   (2866 perm/sec)   p_kst 2.539706e-02   p_cons 1.010588e-02   p_joint 4.061765e-03

Joint ci ratio: 1.035951e-01	ci left: 3.863154e-03	ci right 4.287979e-03	k: 1425	n:350000
Cons ci ratio: 6.555991e-02	ci left: 9.779803e-03	ci right 1.044549e-02	k: 3538	n:350000
KS ci ratio: 4.098001e-02	ci left: 2.495480e-02	ci right 2.600165e-02	k: 8916	n:350000
HIRA   350000 perm   123 sec   (2835 perm/sec)   p_kst 2.547429e-02   p_cons 1.010857e-02   p_joint 4.071429e-03

Joint ci ratio: 1.020673e-01	ci left: 3.872218e-03	ci right 4.291382e-03	k: 1468	n:360000
Cons ci ratio: 6.480603e-02	ci left: 9.734932e-03	ci right 1.038966e-02	k: 3621	n:360000
KS ci ratio: 4.039729e-02	ci left: 2.497374e-02	ci right 2.600614e-02	k: 9175	n:360000
HIRA   360000 perm   128 sec   (2806 perm/sec)   p_kst 2.548611e-02   p_cons 1.005833e-02   p_joint 4.077778e-03

Joint ci ratio: 9.733058e-02	ci left: 4.152352e-03	ci right 4.579792e-03	k: 1614	n:370000
Cons ci ratio: 6.393826e-02	ci left: 9.735087e-03	ci right 1.038073e-02	k: 3720	n:370000
KS ci ratio: 3.987778e-02	ci left: 2.494358e-02	ci right 2.596117e-02	k: 9416	n:370000
HIRA   370000 perm   133 sec   (2777 perm/sec)   p_kst 2.544865e-02   p_cons 1.005405e-02   p_joint 4.362162e-03

Outputting figure to mutsig2_images.part000000000078/HIRA.3_3154_370000_0.025449_0.010054_0.0043622.png
                gene_name: HIRA
               theta_stop: 0.097 
                    nperm: 370000 
                     p_ks: 0.025 
        ci_ks_bounds_left: 0.025 
       ci_ks_bounds_right: 0.026 
                   p_cons: 0.010 
      ci_cons_bounds_left: 0.0097 
     ci_cons_bounds_right: 0.010 
                  p_joint: 0.0044 
     ci_joint_bounds_left: 0.0042 
    ci_joint_bounds_right: 0.0046 

Current progress: 56 percent done.
HIRIP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.655452e-03	ci left: 9.767421e-01	ci right 9.823736e-01	k: 9797	n:10000
KS ci ratio: 7.090890e-03	ci left: 9.647821e-01	ci right 9.717416e-01	k: 9684	n:10000
HIRIP3   10000 perm   2 sec   (5928 perm/sec)   p_kst 9.684000e-01   p_cons 9.797000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000078/HIRIP3.3_1699_10000_0.9684_0.9797_1.png
                gene_name: HIRIP3
               theta_stop: 0.0071 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 58 percent done.
HIST1H2AK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.129453e-02	ci left: 3.591340e-01	ci right 3.781425e-01	k: 3686	n:10000
Cons ci ratio: 9.584355e-02	ci left: 1.363893e-01	ci right 1.502192e-01	k: 1432	n:10000
KS ci ratio: 3.227051e-02	ci left: 5.863057e-01	ci right 6.056384e-01	k: 5960	n:10000
HIST1H2AK   10000 perm   2 sec   (6622 perm/sec)   p_kst 5.960000e-01   p_cons 1.432000e-01   p_joint 3.686000e-01

Outputting figure to mutsig2_images.part000000000078/HIST1H2AK.3_397_10000_0.596_0.1432_0.3686.png
                gene_name: HIST1H2AK
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 61 percent done.
HIST1H2AM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.930512e-02	ci left: 3.776368e-01	ci right 3.968289e-01	k: 3872	n:10000
Cons ci ratio: 3.346348e-02	ci left: 5.686497e-01	ci right 5.881046e-01	k: 5784	n:10000
KS ci ratio: 5.881241e-02	ci left: 2.984627e-01	ci right 3.166495e-01	k: 3075	n:10000
HIST1H2AM   10000 perm   1 sec   (6818 perm/sec)   p_kst 3.075000e-01   p_cons 5.784000e-01   p_joint 3.872000e-01

Outputting figure to mutsig2_images.part000000000078/HIST1H2AM.3_397_10000_0.3075_0.5784_0.3872.png
                gene_name: HIST1H2AM
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 64 percent done.
HERC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.321513e-02	ci left: 8.919018e-01	ci right 9.038653e-01	k: 8980	n:10000
Cons ci ratio: 2.214905e-02	ci left: 7.494812e-01	ci right 7.663683e-01	k: 7580	n:10000
KS ci ratio: 1.475807e-02	ci left: 8.692784e-01	ci right 8.823018e-01	k: 8759	n:10000
HERC4   10000 perm   2 sec   (4855 perm/sec)   p_kst 8.759000e-01   p_cons 7.580000e-01   p_joint 8.980000e-01

Outputting figure to mutsig2_images.part000000000078/HERC4.2_3270_10000_0.8759_0.758_0.898.png
                gene_name: HERC4
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 67 percent done.
HEXDC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.964782e-01	ci left: 3.028617e-03	ci right 5.672985e-03	k: 42	n:10000
Cons ci ratio: 9.262005e-03	ci left: 9.426349e-01	ci right 9.515024e-01	k: 9472	n:10000
KS ci ratio: 9.498839e-01	ci left: 9.148061e-04	ci right 2.597003e-03	k: 16	n:10000
HEXDC   10000 perm   2 sec   (6406 perm/sec)   p_kst 1.600000e-03   p_cons 9.472000e-01   p_joint 4.200000e-03

Joint ci ratio: 4.676974e-01	ci left: 2.685268e-03	ci right 4.364195e-03	k: 69	n:20000
Cons ci ratio: 6.553331e-03	ci left: 9.439073e-01	ci right 9.501619e-01	k: 18942	n:20000
KS ci ratio: 6.352878e-01	ci left: 1.302895e-03	ci right 2.549089e-03	k: 37	n:20000
HEXDC   20000 perm   4 sec   (5650 perm/sec)   p_kst 1.850000e-03   p_cons 9.471000e-01   p_joint 3.450000e-03

Joint ci ratio: 4.490775e-01	ci left: 1.966901e-03	ci right 3.132778e-03	k: 75	n:30000
Cons ci ratio: 5.419130e-03	ci left: 9.431778e-01	ci right 9.483354e-01	k: 28374	n:30000
KS ci ratio: 5.055551e-01	ci left: 1.497445e-03	ci right 2.536133e-03	k: 59	n:30000
HEXDC   30000 perm   6 sec   (5383 perm/sec)   p_kst 1.966667e-03   p_cons 9.458000e-01   p_joint 2.500000e-03

Joint ci ratio: 3.934821e-01	ci left: 1.989462e-03	ci right 2.984965e-03	k: 98	n:40000
Cons ci ratio: 4.761065e-03	ci left: 9.420075e-01	ci right 9.465277e-01	k: 37772	n:40000
KS ci ratio: 4.434141e-01	ci left: 1.519469e-03	ci right 2.405341e-03	k: 77	n:40000
HEXDC   40000 perm   8 sec   (5187 perm/sec)   p_kst 1.925000e-03   p_cons 9.443000e-01   p_joint 2.450000e-03

Joint ci ratio: 3.544634e-01	ci left: 2.008446e-03	ci right 2.890909e-03	k: 121	n:50000
Cons ci ratio: 4.223366e-03	ci left: 9.431285e-01	ci right 9.471397e-01	k: 47258	n:50000
KS ci ratio: 4.039329e-01	ci left: 1.501514e-03	ci right 2.278149e-03	k: 93	n:50000
HEXDC   50000 perm   10 sec   (5045 perm/sec)   p_kst 1.860000e-03   p_cons 9.451600e-01   p_joint 2.420000e-03

Joint ci ratio: 3.144524e-01	ci left: 2.177707e-03	ci right 3.004911e-03	k: 154	n:60000
Cons ci ratio: 3.686692e-03	ci left: 9.478363e-01	ci right 9.513534e-01	k: 56977	n:60000
KS ci ratio: 3.651884e-01	ci left: 1.567514e-03	ci right 2.282044e-03	k: 114	n:60000
HEXDC   60000 perm   12 sec   (4928 perm/sec)   p_kst 1.900000e-03   p_cons 9.496167e-01   p_joint 2.566667e-03

Joint ci ratio: 2.893937e-01	ci left: 2.236365e-03	ci right 3.005789e-03	k: 182	n:70000
Cons ci ratio: 3.404055e-03	ci left: 9.482290e-01	ci right 9.514764e-01	k: 66491	n:70000
KS ci ratio: 3.358081e-01	ci left: 1.617222e-03	ci right 2.282293e-03	k: 135	n:70000
HEXDC   70000 perm   15 sec   (4821 perm/sec)   p_kst 1.928571e-03   p_cons 9.498714e-01   p_joint 2.600000e-03

Joint ci ratio: 2.682345e-01	ci left: 2.305647e-03	ci right 3.031168e-03	k: 212	n:80000
Cons ci ratio: 3.168127e-03	ci left: 9.488221e-01	ci right 9.518451e-01	k: 76028	n:80000
KS ci ratio: 3.115484e-01	ci left: 1.667762e-03	ci right 2.294237e-03	k: 157	n:80000
HEXDC   80000 perm   17 sec   (4724 perm/sec)   p_kst 1.962500e-03   p_cons 9.503500e-01   p_joint 2.650000e-03

Joint ci ratio: 2.475766e-01	ci left: 2.434059e-03	ci right 3.131935e-03	k: 249	n:90000
Cons ci ratio: 2.977576e-03	ci left: 9.492091e-01	ci right 9.520506e-01	k: 85558	n:90000
KS ci ratio: 2.894784e-01	ci left: 1.739327e-03	ci right 2.337941e-03	k: 182	n:90000
HEXDC   90000 perm   19 sec   (4633 perm/sec)   p_kst 2.022222e-03   p_cons 9.506444e-01   p_joint 2.766667e-03

Joint ci ratio: 2.364900e-01	ci left: 2.416102e-03	ci right 3.073268e-03	k: 273	n:100000
Cons ci ratio: 2.827893e-03	ci left: 9.491780e-01	ci right 9.518758e-01	k: 95054	n:100000
KS ci ratio: 2.804418e-01	ci left: 1.676813e-03	ci right 2.232712e-03	k: 194	n:100000
HEXDC   100000 perm   22 sec   (4548 perm/sec)   p_kst 1.940000e-03   p_cons 9.505400e-01   p_joint 2.730000e-03

Joint ci ratio: 2.237786e-01	ci left: 2.470612e-03	ci right 3.101511e-03	k: 305	n:110000
Cons ci ratio: 2.699761e-03	ci left: 9.491189e-01	ci right 9.516937e-01	k: 104546	n:110000
KS ci ratio: 2.646240e-01	ci left: 1.727666e-03	ci right 2.262773e-03	k: 218	n:110000
HEXDC   110000 perm   25 sec   (4465 perm/sec)   p_kst 1.981818e-03   p_cons 9.504182e-01   p_joint 2.772727e-03

Joint ci ratio: 2.135530e-01	ci left: 2.501046e-03	ci right 3.106712e-03	k: 335	n:120000
Cons ci ratio: 2.594434e-03	ci left: 9.488192e-01	ci right 9.512923e-01	k: 114008	n:120000
KS ci ratio: 2.533100e-01	ci left: 1.739548e-03	ci right 2.251665e-03	k: 238	n:120000
HEXDC   120000 perm   27 sec   (4389 perm/sec)   p_kst 1.983333e-03   p_cons 9.500667e-01   p_joint 2.791667e-03

Joint ci ratio: 2.040539e-01	ci left: 2.541952e-03	ci right 3.126729e-03	k: 367	n:130000
Cons ci ratio: 2.488527e-03	ci left: 9.490269e-01	ci right 9.513991e-01	k: 123529	n:130000
KS ci ratio: 2.419333e-01	ci left: 1.771690e-03	ci right 2.266330e-03	k: 261	n:130000
HEXDC   130000 perm   30 sec   (4316 perm/sec)   p_kst 2.007692e-03   p_cons 9.502231e-01   p_joint 2.823077e-03

Joint ci ratio: 1.967079e-01	ci left: 2.550352e-03	ci right 3.113410e-03	k: 395	n:140000
Cons ci ratio: 2.392600e-03	ci left: 9.492859e-01	ci right 9.515669e-01	k: 133061	n:140000
KS ci ratio: 2.336120e-01	ci left: 1.772772e-03	ci right 2.248232e-03	k: 280	n:140000
HEXDC   140000 perm   33 sec   (4244 perm/sec)   p_kst 2.000000e-03   p_cons 9.504357e-01   p_joint 2.821429e-03

Joint ci ratio: 1.901021e-01	ci left: 2.557960e-03	ci right 3.101541e-03	k: 423	n:150000
Cons ci ratio: 2.319197e-03	ci left: 9.490063e-01	ci right 9.512163e-01	k: 142518	n:150000
KS ci ratio: 2.264726e-01	ci left: 1.767672e-03	ci right 2.225254e-03	k: 298	n:150000
HEXDC   150000 perm   36 sec   (4174 perm/sec)   p_kst 1.986667e-03   p_cons 9.501200e-01   p_joint 2.820000e-03

Joint ci ratio: 1.839162e-01	ci left: 2.570855e-03	ci right 3.097417e-03	k: 452	n:160000
Cons ci ratio: 2.241130e-03	ci left: 9.492301e-01	ci right 9.513660e-01	k: 152049	n:160000
KS ci ratio: 2.192583e-01	ci left: 1.775217e-03	ci right 2.218140e-03	k: 318	n:160000
HEXDC   160000 perm   39 sec   (4107 perm/sec)   p_kst 1.987500e-03   p_cons 9.503063e-01   p_joint 2.825000e-03

Joint ci ratio: 1.788563e-01	ci left: 2.565625e-03	ci right 3.075095e-03	k: 478	n:170000
Cons ci ratio: 2.174488e-03	ci left: 9.492503e-01	ci right 9.513225e-01	k: 161550	n:170000
KS ci ratio: 2.123785e-01	ci left: 1.787647e-03	ci right 2.217855e-03	k: 339	n:170000
HEXDC   170000 perm   42 sec   (4044 perm/sec)   p_kst 1.994118e-03   p_cons 9.502941e-01   p_joint 2.811765e-03

Joint ci ratio: 1.755926e-01	ci left: 2.518649e-03	ci right 3.008695e-03	k: 496	n:180000
Cons ci ratio: 2.120531e-03	ci left: 9.489495e-01	ci right 9.509693e-01	k: 170994	n:180000
KS ci ratio: 2.078462e-01	ci left: 1.767280e-03	ci right 2.182355e-03	k: 354	n:180000
HEXDC   180000 perm   45 sec   (3982 perm/sec)   p_kst 1.966667e-03   p_cons 9.499667e-01   p_joint 2.755556e-03

Joint ci ratio: 1.715022e-01	ci left: 2.506916e-03	ci right 2.982141e-03	k: 520	n:190000
Cons ci ratio: 2.066785e-03	ci left: 9.488458e-01	ci right 9.508141e-01	k: 180469	n:190000
KS ci ratio: 2.030429e-01	ci left: 1.759136e-03	ci right 2.161566e-03	k: 371	n:190000
HEXDC   190000 perm   48 sec   (3922 perm/sec)   p_kst 1.952632e-03   p_cons 9.498368e-01   p_joint 2.736842e-03

Joint ci ratio: 1.670713e-01	ci left: 2.515640e-03	ci right 2.978959e-03	k: 548	n:200000
Cons ci ratio: 2.012796e-03	ci left: 9.489500e-01	ci right 9.508669e-01	k: 189983	n:200000
KS ci ratio: 1.967918e-01	ci left: 1.785176e-03	ci right 2.179482e-03	k: 395	n:200000
HEXDC   200000 perm   52 sec   (3864 perm/sec)   p_kst 1.975000e-03   p_cons 9.499150e-01   p_joint 2.740000e-03

Joint ci ratio: 1.624035e-01	ci left: 2.541950e-03	ci right 2.995757e-03	k: 580	n:210000
Cons ci ratio: 1.964594e-03	ci left: 9.489584e-01	ci right 9.508292e-01	k: 199479	n:210000
KS ci ratio: 1.910846e-01	ci left: 1.808907e-03	ci right 2.195522e-03	k: 419	n:210000
HEXDC   210000 perm   55 sec   (3808 perm/sec)   p_kst 1.995238e-03   p_cons 9.499000e-01   p_joint 2.761905e-03

Joint ci ratio: 1.586260e-01	ci left: 2.548568e-03	ci right 2.991966e-03	k: 608	n:220000
Cons ci ratio: 1.921345e-03	ci left: 9.488839e-01	ci right 9.507133e-01	k: 208957	n:220000
KS ci ratio: 1.860568e-01	ci left: 1.826296e-03	ci right 2.205198e-03	k: 442	n:220000
HEXDC   220000 perm   59 sec   (3754 perm/sec)   p_kst 2.009091e-03   p_cons 9.498045e-01   p_joint 2.763636e-03

Joint ci ratio: 1.546145e-01	ci left: 2.571441e-03	ci right 3.006457e-03	k: 640	n:230000
Cons ci ratio: 1.881512e-03	ci left: 9.487814e-01	ci right 9.505725e-01	k: 218427	n:230000
KS ci ratio: 1.814060e-01	ci left: 1.842295e-03	ci right 2.213912e-03	k: 465	n:230000
HEXDC   230000 perm   62 sec   (3701 perm/sec)   p_kst 2.021739e-03   p_cons 9.496826e-01   p_joint 2.782609e-03

Joint ci ratio: 1.518000e-01	ci left: 2.560463e-03	ci right 2.985020e-03	k: 664	n:240000
Cons ci ratio: 1.839872e-03	ci left: 9.489063e-01	ci right 9.506578e-01	k: 227949	n:240000
KS ci ratio: 1.778177e-01	ci left: 1.841140e-03	ci right 2.204388e-03	k: 484	n:240000
HEXDC   240000 perm   66 sec   (3650 perm/sec)   p_kst 2.016667e-03   p_cons 9.497875e-01   p_joint 2.766667e-03

Joint ci ratio: 1.487017e-01	ci left: 2.565835e-03	ci right 2.981826e-03	k: 692	n:250000
Cons ci ratio: 1.800342e-03	ci left: 9.490497e-01	ci right 9.507638e-01	k: 237478	n:250000
KS ci ratio: 1.742611e-01	ci left: 1.843970e-03	ci right 2.199734e-03	k: 504	n:250000
HEXDC   250000 perm   69 sec   (3600 perm/sec)   p_kst 2.016000e-03   p_cons 9.499120e-01   p_joint 2.768000e-03

Joint ci ratio: 1.460907e-01	ci left: 2.559756e-03	ci right 2.966839e-03	k: 717	n:260000
Cons ci ratio: 1.768310e-03	ci left: 9.489072e-01	ci right 9.505904e-01	k: 246936	n:260000
KS ci ratio: 1.715658e-01	ci left: 1.831922e-03	ci right 2.179329e-03	k: 520	n:260000
HEXDC   260000 perm   73 sec   (3552 perm/sec)   p_kst 2.000000e-03   p_cons 9.497538e-01   p_joint 2.757692e-03

Joint ci ratio: 1.430346e-01	ci left: 2.575614e-03	ci right 2.975919e-03	k: 748	n:270000
Cons ci ratio: 1.736097e-03	ci left: 9.488764e-01	ci right 9.505288e-01	k: 256421	n:270000
KS ci ratio: 1.678989e-01	ci left: 1.845641e-03	ci right 2.187412e-03	k: 543	n:270000
HEXDC   270000 perm   77 sec   (3505 perm/sec)   p_kst 2.011111e-03   p_cons 9.497074e-01   p_joint 2.770370e-03

Joint ci ratio: 1.399828e-01	ci left: 2.597314e-03	ci right 2.991660e-03	k: 781	n:280000
Cons ci ratio: 1.702904e-03	ci left: 9.489991e-01	ci right 9.506201e-01	k: 265948	n:280000
KS ci ratio: 1.647489e-01	ci left: 1.851604e-03	ci right 2.187409e-03	k: 564	n:280000
HEXDC   280000 perm   81 sec   (3458 perm/sec)   p_kst 2.014286e-03   p_cons 9.498143e-01   p_joint 2.789286e-03

Joint ci ratio: 1.376273e-01	ci left: 2.597622e-03	ci right 2.984834e-03	k: 808	n:290000
Cons ci ratio: 1.674442e-03	ci left: 9.489469e-01	ci right 9.505406e-01	k: 275427	n:290000
KS ci ratio: 1.621863e-01	ci left: 1.847285e-03	ci right 2.176588e-03	k: 582	n:290000
HEXDC   290000 perm   85 sec   (3412 perm/sec)   p_kst 2.006897e-03   p_cons 9.497483e-01   p_joint 2.786207e-03

Joint ci ratio: 1.352247e-01	ci left: 2.604402e-03	ci right 2.985303e-03	k: 837	n:300000
Cons ci ratio: 1.646325e-03	ci left: 9.489589e-01	ci right 9.505257e-01	k: 284924	n:300000
KS ci ratio: 1.597396e-01	ci left: 1.843291e-03	ci right 2.166450e-03	k: 600	n:300000
HEXDC   300000 perm   89 sec   (3369 perm/sec)   p_kst 2.000000e-03   p_cons 9.497467e-01   p_joint 2.790000e-03

Joint ci ratio: 1.334851e-01	ci left: 2.588970e-03	ci right 2.962357e-03	k: 859	n:310000
Cons ci ratio: 1.618154e-03	ci left: 9.490548e-01	ci right 9.505949e-01	k: 294447	n:310000
KS ci ratio: 1.576559e-01	ci left: 1.833393e-03	ci right 2.150226e-03	k: 616	n:310000
HEXDC   310000 perm   93 sec   (3327 perm/sec)   p_kst 1.987097e-03   p_cons 9.498290e-01   p_joint 2.770968e-03

Joint ci ratio: 1.315868e-01	ci left: 2.583599e-03	ci right 2.950498e-03	k: 884	n:320000
Cons ci ratio: 1.594406e-03	ci left: 9.489623e-01	ci right 9.504796e-01	k: 303912	n:320000
KS ci ratio: 1.556516e-01	ci left: 1.824139e-03	ci right 2.134991e-03	k: 632	n:320000
HEXDC   320000 perm   97 sec   (3282 perm/sec)   p_kst 1.975000e-03   p_cons 9.497250e-01   p_joint 2.762500e-03

Joint ci ratio: 1.292696e-01	ci left: 2.599115e-03	ci right 2.961219e-03	k: 916	n:330000
Cons ci ratio: 1.570522e-03	ci left: 9.489458e-01	ci right 9.504403e-01	k: 313400	n:330000
KS ci ratio: 1.527812e-01	ci left: 1.838784e-03	ci right 2.145825e-03	k: 656	n:330000
HEXDC   330000 perm   102 sec   (3241 perm/sec)   p_kst 1.987879e-03   p_cons 9.496970e-01   p_joint 2.775758e-03

Joint ci ratio: 1.282276e-01	ci left: 2.565365e-03	ci right 2.919666e-03	k: 931	n:340000
Cons ci ratio: 1.547442e-03	ci left: 9.489452e-01	ci right 9.504177e-01	k: 322893	n:340000
KS ci ratio: 1.514066e-01	ci left: 1.818651e-03	ci right 2.119350e-03	k: 668	n:340000
HEXDC   340000 perm   107 sec   (3192 perm/sec)   p_kst 1.964706e-03   p_cons 9.496853e-01   p_joint 2.738235e-03

Joint ci ratio: 1.261462e-01	ci left: 2.577823e-03	ci right 2.927633e-03	k: 962	n:350000
Cons ci ratio: 1.525851e-03	ci left: 9.489132e-01	ci right 9.503650e-01	k: 332375	n:350000
KS ci ratio: 1.493014e-01	ci left: 1.818933e-03	ci right 2.115124e-03	k: 687	n:350000
HEXDC   350000 perm   111 sec   (3154 perm/sec)   p_kst 1.962857e-03   p_cons 9.496429e-01   p_joint 2.748571e-03

Joint ci ratio: 1.247940e-01	ci left: 2.562718e-03	ci right 2.906475e-03	k: 983	n:360000
Cons ci ratio: 1.504353e-03	ci left: 9.489335e-01	ci right 9.503648e-01	k: 341875	n:360000
KS ci ratio: 1.481238e-01	ci left: 1.797824e-03	ci right 2.088064e-03	k: 698	n:360000
HEXDC   360000 perm   116 sec   (3117 perm/sec)   p_kst 1.938889e-03   p_cons 9.496528e-01   p_joint 2.730556e-03

Joint ci ratio: 1.229336e-01	ci left: 2.572025e-03	ci right 2.911513e-03	k: 1013	n:370000
Cons ci ratio: 1.485038e-03	ci left: 9.488684e-01	ci right 9.502813e-01	k: 351344	n:370000
KS ci ratio: 1.459474e-01	ci left: 1.803904e-03	ci right 2.090473e-03	k: 719	n:370000
HEXDC   370000 perm   120 sec   (3081 perm/sec)   p_kst 1.943243e-03   p_cons 9.495784e-01   p_joint 2.737838e-03

Joint ci ratio: 1.214460e-01	ci left: 2.568118e-03	ci right 2.902694e-03	k: 1038	n:380000
Cons ci ratio: 1.465318e-03	ci left: 9.488811e-01	ci right 9.502752e-01	k: 360841	n:380000
KS ci ratio: 1.440591e-01	ci left: 1.804618e-03	ci right 2.087273e-03	k: 738	n:380000
HEXDC   380000 perm   125 sec   (3046 perm/sec)   p_kst 1.942105e-03   p_cons 9.495816e-01   p_joint 2.731579e-03

Joint ci ratio: 1.198982e-01	ci left: 2.569410e-03	ci right 2.899585e-03	k: 1065	n:390000
Cons ci ratio: 1.446944e-03	ci left: 9.488546e-01	ci right 9.502310e-01	k: 370323	n:390000
KS ci ratio: 1.421483e-01	ci left: 1.807792e-03	ci right 2.086870e-03	k: 758	n:390000
HEXDC   390000 perm   130 sec   (3011 perm/sec)   p_kst 1.943590e-03   p_cons 9.495462e-01   p_joint 2.730769e-03

Joint ci ratio: 1.185713e-01	ci left: 2.563385e-03	ci right 2.888885e-03	k: 1089	n:400000
Cons ci ratio: 1.428647e-03	ci left: 9.488697e-01	ci right 9.502288e-01	k: 379821	n:400000
KS ci ratio: 1.404924e-01	ci left: 1.806006e-03	ci right 2.081289e-03	k: 776	n:400000
HEXDC   400000 perm   134 sec   (2976 perm/sec)   p_kst 1.940000e-03   p_cons 9.495525e-01   p_joint 2.722500e-03

Joint ci ratio: 1.172876e-01	ci left: 2.557673e-03	ci right 2.878688e-03	k: 1113	n:410000
Cons ci ratio: 1.410812e-03	ci left: 9.488990e-01	ci right 9.502410e-01	k: 389325	n:410000
KS ci ratio: 1.389807e-01	ci left: 1.801971e-03	ci right 2.073438e-03	k: 793	n:410000
HEXDC   410000 perm   139 sec   (2943 perm/sec)   p_kst 1.934146e-03   p_cons 9.495732e-01   p_joint 2.714634e-03

Joint ci ratio: 1.161984e-01	ci left: 2.545315e-03	ci right 2.861608e-03	k: 1134	n:420000
Cons ci ratio: 1.394737e-03	ci left: 9.488502e-01	ci right 9.501769e-01	k: 398797	n:420000
KS ci ratio: 1.373471e-01	ci left: 1.802741e-03	ci right 2.070871e-03	k: 812	n:420000
HEXDC   420000 perm   144 sec   (2912 perm/sec)   p_kst 1.933333e-03   p_cons 9.495167e-01   p_joint 2.700000e-03

Joint ci ratio: 1.149894e-01	ci left: 2.540321e-03	ci right 2.852487e-03	k: 1158	n:430000
Cons ci ratio: 1.378195e-03	ci left: 9.488741e-01	ci right 9.501850e-01	k: 408299	n:430000
KS ci ratio: 1.362630e-01	ci left: 1.790014e-03	ci right 2.053979e-03	k: 825	n:430000
HEXDC   430000 perm   149 sec   (2880 perm/sec)   p_kst 1.918605e-03   p_cons 9.495326e-01   p_joint 2.693023e-03

Joint ci ratio: 1.137692e-01	ci left: 2.537779e-03	ci right 2.846101e-03	k: 1183	n:440000
Cons ci ratio: 1.363228e-03	ci left: 9.488260e-01	ci right 9.501226e-01	k: 417770	n:440000
KS ci ratio: 1.350430e-01	ci left: 1.782265e-03	ci right 2.042546e-03	k: 840	n:440000
HEXDC   440000 perm   154 sec   (2850 perm/sec)   p_kst 1.909091e-03   p_cons 9.494773e-01   p_joint 2.688636e-03

Joint ci ratio: 1.126337e-01	ci left: 2.533207e-03	ci right 2.837697e-03	k: 1207	n:450000
Cons ci ratio: 1.349112e-03	ci left: 9.487534e-01	ci right 9.500364e-01	k: 427229	n:450000
KS ci ratio: 1.333876e-01	ci left: 1.787760e-03	ci right 2.045388e-03	k: 861	n:450000
HEXDC   450000 perm   160 sec   (2821 perm/sec)   p_kst 1.913333e-03   p_cons 9.493978e-01   p_joint 2.682222e-03

Joint ci ratio: 1.112152e-01	ci left: 2.543642e-03	ci right 2.845284e-03	k: 1238	n:460000
Cons ci ratio: 1.334306e-03	ci left: 9.487649e-01	ci right 9.500338e-01	k: 436725	n:460000
KS ci ratio: 1.317170e-01	ci left: 1.795136e-03	ci right 2.050334e-03	k: 883	n:460000
HEXDC   460000 perm   165 sec   (2791 perm/sec)   p_kst 1.919565e-03   p_cons 9.494022e-01   p_joint 2.691304e-03

Joint ci ratio: 1.101101e-01	ci left: 2.541241e-03	ci right 2.839410e-03	k: 1263	n:470000
Cons ci ratio: 1.320210e-03	ci left: 9.487588e-01	ci right 9.500143e-01	k: 446213	n:470000
KS ci ratio: 1.305414e-01	ci left: 1.789867e-03	ci right 2.041869e-03	k: 899	n:470000
HEXDC   470000 perm   170 sec   (2763 perm/sec)   p_kst 1.912766e-03   p_cons 9.493894e-01   p_joint 2.687234e-03

Joint ci ratio: 1.089950e-01	ci left: 2.540981e-03	ci right 2.835906e-03	k: 1289	n:480000
Cons ci ratio: 1.306184e-03	ci left: 9.487804e-01	ci right 9.500225e-01	k: 455714	n:480000
KS ci ratio: 1.290443e-01	ci left: 1.794908e-03	ci right 2.044499e-03	k: 920	n:480000
HEXDC   480000 perm   175 sec   (2735 perm/sec)   p_kst 1.916667e-03   p_cons 9.494042e-01   p_joint 2.685417e-03

Joint ci ratio: 1.077489e-01	ci left: 2.548690e-03	ci right 2.840913e-03	k: 1319	n:490000
Cons ci ratio: 1.292705e-03	ci left: 9.487929e-01	ci right 9.500222e-01	k: 465211	n:490000
KS ci ratio: 1.274620e-01	ci left: 1.803710e-03	ci right 2.051218e-03	k: 943	n:490000
HEXDC   490000 perm   181 sec   (2708 perm/sec)   p_kst 1.924490e-03   p_cons 9.494102e-01   p_joint 2.691837e-03

Joint ci ratio: 1.065842e-01	ci left: 2.554162e-03	ci right 2.843648e-03	k: 1348	n:500000
Cons ci ratio: 1.278782e-03	ci left: 9.488693e-01	ci right 9.500855e-01	k: 474740	n:500000
KS ci ratio: 1.260019e-01	ci left: 1.810242e-03	ci right 2.055587e-03	k: 965	n:500000
HEXDC   500000 perm   187 sec   (2681 perm/sec)   p_kst 1.930000e-03   p_cons 9.494800e-01   p_joint 2.696000e-03

Joint ci ratio: 1.054565e-01	ci left: 2.559436e-03	ci right 2.846260e-03	k: 1377	n:510000
Cons ci ratio: 1.266074e-03	ci left: 9.488837e-01	ci right 9.500877e-01	k: 484239	n:510000
KS ci ratio: 1.244647e-01	ci left: 1.820332e-03	ci right 2.063813e-03	k: 989	n:510000
HEXDC   510000 perm   192 sec   (2654 perm/sec)   p_kst 1.939216e-03   p_cons 9.494882e-01   p_joint 2.700000e-03

Joint ci ratio: 1.043639e-01	ci left: 2.564522e-03	ci right 2.848756e-03	k: 1406	n:520000
Cons ci ratio: 1.252279e-03	ci left: 9.490097e-01	ci right 9.502007e-01	k: 493796	n:520000
KS ci ratio: 1.229216e-01	ci left: 1.831915e-03	ci right 2.073688e-03	k: 1014	n:520000
HEXDC   520000 perm   198 sec   (2628 perm/sec)   p_kst 1.950000e-03   p_cons 9.496077e-01   p_joint 2.703846e-03

Joint ci ratio: 1.031965e-01	ci left: 2.574946e-03	ci right 2.856949e-03	k: 1438	n:530000
Cons ci ratio: 1.240361e-03	ci left: 9.490190e-01	ci right 9.501987e-01	k: 503294	n:530000
KS ci ratio: 1.213762e-01	ci left: 1.844909e-03	ci right 2.085115e-03	k: 1040	n:530000
HEXDC   530000 perm   204 sec   (2603 perm/sec)   p_kst 1.962264e-03   p_cons 9.496113e-01   p_joint 2.713208e-03

Joint ci ratio: 1.020326e-01	ci left: 2.586805e-03	ci right 2.866721e-03	k: 1471	n:540000
Cons ci ratio: 1.229562e-03	ci left: 9.489666e-01	ci right 9.501360e-01	k: 512759	n:540000
KS ci ratio: 1.201133e-01	ci left: 1.850255e-03	ci right 2.088472e-03	k: 1062	n:540000
HEXDC   540000 perm   209 sec   (2579 perm/sec)   p_kst 1.966667e-03   p_cons 9.495537e-01   p_joint 2.724074e-03

Joint ci ratio: 1.009746e-01	ci left: 2.594705e-03	ci right 2.872392e-03	k: 1502	n:550000
Cons ci ratio: 1.218345e-03	ci left: 9.489710e-01	ci right 9.501297e-01	k: 522254	n:550000
KS ci ratio: 1.187795e-01	ci left: 1.858947e-03	ci right 2.095439e-03	k: 1086	n:550000
HEXDC   550000 perm   215 sec   (2555 perm/sec)   p_kst 1.974545e-03   p_cons 9.495527e-01   p_joint 2.730909e-03

Joint ci ratio: 1.001782e-01	ci left: 2.590150e-03	ci right 2.865035e-03	k: 1526	n:560000
Cons ci ratio: 1.207654e-03	ci left: 9.489574e-01	ci right 9.501058e-01	k: 531739	n:560000
KS ci ratio: 1.178082e-01	ci left: 1.856943e-03	ci right 2.091114e-03	k: 1104	n:560000
HEXDC   560000 perm   221 sec   (2531 perm/sec)   p_kst 1.971429e-03   p_cons 9.495339e-01   p_joint 2.725000e-03

Joint ci ratio: 9.924013e-02	ci left: 2.594318e-03	ci right 2.866916e-03	k: 1555	n:570000
Cons ci ratio: 1.196977e-03	ci left: 9.489654e-01	ci right 9.501037e-01	k: 541236	n:570000
KS ci ratio: 1.169126e-01	ci left: 1.853314e-03	ci right 2.085128e-03	k: 1121	n:570000
HEXDC   570000 perm   227 sec   (2507 perm/sec)   p_kst 1.966667e-03   p_cons 9.495368e-01   p_joint 2.728070e-03

Joint ci ratio: 9.832792e-02	ci left: 2.598353e-03	ci right 2.868721e-03	k: 1584	n:580000
Cons ci ratio: 1.185853e-03	ci left: 9.490321e-01	ci right 9.501599e-01	k: 550767	n:580000
KS ci ratio: 1.158335e-01	ci left: 1.856514e-03	ci right 2.086438e-03	k: 1142	n:580000
HEXDC   580000 perm   233 sec   (2484 perm/sec)   p_kst 1.968966e-03   p_cons 9.495983e-01   p_joint 2.731034e-03

Joint ci ratio: 9.725930e-02	ci left: 2.612185e-03	ci right 2.880870e-03	k: 1619	n:590000
Cons ci ratio: 1.176405e-03	ci left: 9.489842e-01	ci right 9.501029e-01	k: 560232	n:590000
KS ci ratio: 1.147344e-01	ci left: 1.861260e-03	ci right 2.089437e-03	k: 1164	n:590000
HEXDC   590000 perm   240 sec   (2461 perm/sec)   p_kst 1.972881e-03   p_cons 9.495458e-01   p_joint 2.744068e-03

Joint ci ratio: 9.648821e-02	ci left: 2.610932e-03	ci right 2.877239e-03	k: 1645	n:600000
Cons ci ratio: 1.165838e-03	ci left: 9.490485e-01	ci right 9.501572e-01	k: 569763	n:600000
KS ci ratio: 1.139066e-01	ci left: 1.857762e-03	ci right 2.083756e-03	k: 1181	n:600000
HEXDC   600000 perm   246 sec   (2439 perm/sec)   p_kst 1.968333e-03   p_cons 9.496050e-01   p_joint 2.741667e-03

Joint ci ratio: 9.553486e-02	ci left: 2.620930e-03	ci right 2.885467e-03	k: 1678	n:610000
Cons ci ratio: 1.156085e-03	ci left: 9.490662e-01	ci right 9.501656e-01	k: 579267	n:610000
KS ci ratio: 1.127671e-01	ci left: 1.865537e-03	ci right 2.090055e-03	k: 1205	n:610000
HEXDC   610000 perm   252 sec   (2417 perm/sec)   p_kst 1.975410e-03   p_cons 9.496180e-01   p_joint 2.750820e-03

Joint ci ratio: 9.466467e-02	ci left: 2.627468e-03	ci right 2.890116e-03	k: 1709	n:620000
Cons ci ratio: 1.146457e-03	ci left: 9.490931e-01	ci right 9.501834e-01	k: 588777	n:620000
KS ci ratio: 1.117522e-01	ci left: 1.869935e-03	ci right 2.092824e-03	k: 1227	n:620000
HEXDC   620000 perm   259 sec   (2395 perm/sec)   p_kst 1.979032e-03   p_cons 9.496403e-01   p_joint 2.756452e-03

Joint ci ratio: 9.406195e-02	ci left: 2.619858e-03	ci right 2.879986e-03	k: 1731	n:630000
Cons ci ratio: 1.137216e-03	ci left: 9.491064e-01	ci right 9.501879e-01	k: 598279	n:630000
KS ci ratio: 1.111659e-01	ci left: 1.860313e-03	ci right 2.080815e-03	k: 1240	n:630000
HEXDC   630000 perm   265 sec   (2374 perm/sec)   p_kst 1.968254e-03   p_cons 9.496492e-01   p_joint 2.747619e-03

Joint ci ratio: 9.301966e-02	ci left: 2.638436e-03	ci right 2.897347e-03	k: 1770	n:640000
Cons ci ratio: 1.128342e-03	ci left: 9.491067e-01	ci right 9.501798e-01	k: 607773	n:640000
KS ci ratio: 1.098453e-01	ci left: 1.876825e-03	ci right 2.096472e-03	k: 1270	n:640000
HEXDC   640000 perm   272 sec   (2351 perm/sec)   p_kst 1.984375e-03   p_cons 9.496453e-01   p_joint 2.765625e-03

Joint ci ratio: 9.242179e-02	ci left: 2.632409e-03	ci right 2.888978e-03	k: 1793	n:650000
Cons ci ratio: 1.120303e-03	ci left: 9.490530e-01	ci right 9.501184e-01	k: 617232	n:650000
KS ci ratio: 1.091606e-01	ci left: 1.871892e-03	ci right 2.089508e-03	k: 1286	n:650000
HEXDC   650000 perm   280 sec   (2322 perm/sec)   p_kst 1.978462e-03   p_cons 9.495877e-01   p_joint 2.758462e-03

Joint ci ratio: 9.178466e-02	ci left: 2.629530e-03	ci right 2.883957e-03	k: 1818	n:660000
Cons ci ratio: 1.112572e-03	ci left: 9.489888e-01	ci right 9.500467e-01	k: 626683	n:660000
KS ci ratio: 1.085304e-01	ci left: 1.865638e-03	ci right 2.081195e-03	k: 1301	n:660000
HEXDC   660000 perm   287 sec   (2298 perm/sec)   p_kst 1.971212e-03   p_cons 9.495197e-01   p_joint 2.754545e-03

Joint ci ratio: 9.096288e-02	ci left: 2.638412e-03	ci right 2.891291e-03	k: 1851	n:670000
Cons ci ratio: 1.104070e-03	ci left: 9.490075e-01	ci right 9.500573e-01	k: 636188	n:670000
KS ci ratio: 1.075434e-01	ci left: 1.872646e-03	ci right 2.086920e-03	k: 1325	n:670000
HEXDC   670000 perm   294 sec   (2277 perm/sec)   p_kst 1.977612e-03   p_cons 9.495343e-01   p_joint 2.762687e-03

Joint ci ratio: 9.033112e-02	ci left: 2.636980e-03	ci right 2.887874e-03	k: 1877	n:680000
Cons ci ratio: 1.096062e-03	ci left: 9.489991e-01	ci right 9.500412e-01	k: 645675	n:680000
KS ci ratio: 1.069007e-01	ci left: 1.868006e-03	ci right 2.080391e-03	k: 1341	n:680000
HEXDC   680000 perm   301 sec   (2258 perm/sec)   p_kst 1.972059e-03   p_cons 9.495221e-01   p_joint 2.760294e-03

Joint ci ratio: 8.971235e-02	ci left: 2.635596e-03	ci right 2.884550e-03	k: 1903	n:690000
Cons ci ratio: 1.087633e-03	ci left: 9.490433e-01	ci right 9.500775e-01	k: 655198	n:690000
KS ci ratio: 1.063479e-01	ci left: 1.860681e-03	ci right 2.071071e-03	k: 1355	n:690000
HEXDC   690000 perm   309 sec   (2234 perm/sec)   p_kst 1.963768e-03   p_cons 9.495623e-01   p_joint 2.757971e-03

Joint ci ratio: 8.931519e-02	ci left: 2.621685e-03	ci right 2.868173e-03	k: 1920	n:700000
Cons ci ratio: 1.080023e-03	ci left: 9.490304e-01	ci right 9.500573e-01	k: 664682	n:700000
KS ci ratio: 1.058422e-01	ci left: 1.852178e-03	ci right 2.060549e-03	k: 1368	n:700000
HEXDC   700000 perm   316 sec   (2214 perm/sec)   p_kst 1.954286e-03   p_cons 9.495457e-01   p_joint 2.742857e-03

Joint ci ratio: 8.867127e-02	ci left: 2.623319e-03	ci right 2.868090e-03	k: 1948	n:710000
Cons ci ratio: 1.072492e-03	ci left: 9.490249e-01	ci right 9.500447e-01	k: 674171	n:710000
KS ci ratio: 1.048508e-01	ci left: 1.861747e-03	ci right 2.069111e-03	k: 1394	n:710000
HEXDC   710000 perm   324 sec   (2193 perm/sec)   p_kst 1.963380e-03   p_cons 9.495366e-01   p_joint 2.743662e-03

Joint ci ratio: 8.810814e-02	ci left: 2.620839e-03	ci right 2.863745e-03	k: 1973	n:720000
Cons ci ratio: 1.064560e-03	ci left: 9.490698e-01	ci right 9.500821e-01	k: 683696	n:720000
KS ci ratio: 1.042549e-01	ci left: 1.857530e-03	ci right 2.063177e-03	k: 1410	n:720000
HEXDC   720000 perm   331 sec   (2176 perm/sec)   p_kst 1.958333e-03   p_cons 9.495778e-01   p_joint 2.740278e-03

Joint ci ratio: 8.764357e-02	ci left: 2.613071e-03	ci right 2.853915e-03	k: 1994	n:730000
Cons ci ratio: 1.056983e-03	ci left: 9.490971e-01	ci right 9.501021e-01	k: 693209	n:730000
KS ci ratio: 1.036690e-01	ci left: 1.853432e-03	ci right 2.057402e-03	k: 1426	n:730000
HEXDC   730000 perm   338 sec   (2159 perm/sec)   p_kst 1.953425e-03   p_cons 9.496014e-01   p_joint 2.731507e-03

Joint ci ratio: 8.686284e-02	ci left: 2.625348e-03	ci right 2.865058e-03	k: 2030	n:740000
Cons ci ratio: 1.049832e-03	ci left: 9.490991e-01	ci right 9.500974e-01	k: 702704	n:740000
KS ci ratio: 1.028078e-01	ci left: 1.859981e-03	ci right 2.062868e-03	k: 1450	n:740000
HEXDC   740000 perm   346 sec   (2141 perm/sec)   p_kst 1.959459e-03   p_cons 9.496000e-01   p_joint 2.743243e-03

Joint ci ratio: 8.614440e-02	ci left: 2.634696e-03	ci right 2.873170e-03	k: 2064	n:750000
Cons ci ratio: 1.042751e-03	ci left: 9.491078e-01	ci right 9.500993e-01	k: 712204	n:750000
KS ci ratio: 1.021064e-01	ci left: 1.861165e-03	ci right 2.062713e-03	k: 1470	n:750000
HEXDC   750000 perm   353 sec   (2124 perm/sec)   p_kst 1.960000e-03   p_cons 9.496053e-01   p_joint 2.752000e-03

Joint ci ratio: 8.556622e-02	ci left: 2.636080e-03	ci right 2.872998e-03	k: 2092	n:760000
Cons ci ratio: 1.036567e-03	ci left: 9.490463e-01	ci right 9.500319e-01	k: 721651	n:760000
KS ci ratio: 1.015217e-01	ci left: 1.858474e-03	ci right 2.058510e-03	k: 1487	n:760000
HEXDC   760000 perm   361 sec   (2108 perm/sec)   p_kst 1.956579e-03   p_cons 9.495408e-01   p_joint 2.752632e-03

Joint ci ratio: 8.487922e-02	ci left: 2.645061e-03	ci right 2.880783e-03	k: 2126	n:770000
Cons ci ratio: 1.029624e-03	ci left: 9.490673e-01	ci right 9.500462e-01	k: 731160	n:770000
KS ci ratio: 1.008797e-01	ci left: 1.858389e-03	ci right 2.057076e-03	k: 1506	n:770000
HEXDC   770000 perm   368 sec   (2092 perm/sec)   p_kst 1.955844e-03   p_cons 9.495584e-01   p_joint 2.761039e-03

Joint ci ratio: 8.426718e-02	ci left: 2.650053e-03	ci right 2.884433e-03	k: 2157	n:780000
Cons ci ratio: 1.023380e-03	ci left: 9.490349e-01	ci right 9.500079e-01	k: 740628	n:780000
KS ci ratio: 1.000529e-01	ci left: 1.865810e-03	ci right 2.063559e-03	k: 1531	n:780000
HEXDC   780000 perm   376 sec   (2076 perm/sec)   p_kst 1.962821e-03   p_cons 9.495231e-01   p_joint 2.765385e-03

Joint ci ratio: 8.355344e-02	ci left: 2.662361e-03	ci right 2.895739e-03	k: 2194	n:790000
Cons ci ratio: 1.016992e-03	ci left: 9.490276e-01	ci right 9.499945e-01	k: 750115	n:790000
KS ci ratio: 9.902323e-02	ci left: 1.881691e-03	ci right 2.078952e-03	k: 1563	n:790000
HEXDC   790000 perm   383 sec   (2061 perm/sec)   p_kst 1.978481e-03   p_cons 9.495127e-01   p_joint 2.777215e-03

Outputting figure to mutsig2_images.part000000000078/HEXDC.2_1802_790000_0.0019785_0.94951_0.0027772.png
                gene_name: HEXDC
               theta_stop: 0.099 
                    nperm: 790000 
                     p_ks: 0.0020 
        ci_ks_bounds_left: 0.0019 
       ci_ks_bounds_right: 0.0021 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.0028 
     ci_joint_bounds_left: 0.0027 
    ci_joint_bounds_right: 0.0029 

Current progress: 69 percent done.
HHIPL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.398907e-01	ci left: 6.768608e-02	ci right 7.796444e-02	k: 727	n:10000
Cons ci ratio: 5.398911e-02	ci left: 3.357785e-01	ci right 3.545118e-01	k: 3451	n:10000
KS ci ratio: 1.612434e-01	ci left: 5.128492e-02	ci right 6.037601e-02	k: 557	n:10000
HHIPL1   10000 perm   2 sec   (5901 perm/sec)   p_kst 5.570000e-02   p_cons 3.451000e-01   p_joint 7.270000e-02

Joint ci ratio: 7.474277e-02	ci left: 1.163630e-01	ci right 1.254476e-01	k: 2417	n:20000
Cons ci ratio: 3.667918e-02	ci left: 3.567791e-01	ci right 3.701606e-01	k: 7269	n:20000
KS ci ratio: 1.127930e-01	ci left: 5.372913e-02	ci right 6.020043e-02	k: 1138	n:20000
HHIPL1   20000 perm   4 sec   (5259 perm/sec)   p_kst 5.690000e-02   p_cons 3.634500e-01   p_joint 1.208500e-01

Joint ci ratio: 4.943636e-02	ci left: 1.689660e-01	ci right 1.775641e-01	k: 5197	n:30000
Cons ci ratio: 3.072305e-02	ci left: 3.463278e-01	ci right 3.571676e-01	k: 10552	n:30000
KS ci ratio: 9.182534e-02	ci left: 5.463110e-02	ci right 5.992171e-02	k: 1717	n:30000
HHIPL1   30000 perm   6 sec   (5014 perm/sec)   p_kst 5.723333e-02   p_cons 3.517333e-01   p_joint 1.732333e-01

Outputting figure to mutsig2_images.part000000000078/HHIPL1.2_2486_30000_0.057233_0.35173_0.17323.png
                gene_name: HHIPL1
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.057 
        ci_ks_bounds_left: 0.055 
       ci_ks_bounds_right: 0.060 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 72 percent done.
HIC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.718632e-02	ci left: 8.314445e-01	ci right 8.459577e-01	k: 8388	n:10000
Cons ci ratio: 7.052912e-02	ci left: 2.276066e-01	ci right 2.443474e-01	k: 2359	n:10000
KS ci ratio: 3.871893e-02	ci left: 4.962503e-01	ci right 5.159461e-01	k: 5061	n:10000
HIC2   10000 perm   2 sec   (6271 perm/sec)   p_kst 5.061000e-01   p_cons 2.359000e-01   p_joint 8.388000e-01

Outputting figure to mutsig2_images.part000000000078/HIC2.2_1856_10000_0.5061_0.2359_0.8388.png
                gene_name: HIC2
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 75 percent done.
HIPK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.217355e-02	ci left: 9.063796e-01	ci right 9.175790e-01	k: 9121	n:10000
Cons ci ratio: 5.621107e-02	ci left: 3.179062e-01	ci right 3.363946e-01	k: 3271	n:10000
KS ci ratio: 8.113531e-03	ci left: 9.549276e-01	ci right 9.628022e-01	k: 9590	n:10000
HIPK4   10000 perm   2 sec   (6073 perm/sec)   p_kst 9.590000e-01   p_cons 3.271000e-01   p_joint 9.121000e-01

Outputting figure to mutsig2_images.part000000000078/HIPK4.2_1867_10000_0.959_0.3271_0.9121.png
                gene_name: HIPK4
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 78 percent done.
HIST1H1E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.132368e-03	ci left: 9.730202e-01	ci right 9.790982e-01	k: 9762	n:10000
Cons ci ratio: 6.606290e-02	ci left: 2.517205e-01	ci right 2.690193e-01	k: 2603	n:10000
KS ci ratio: 2.087337e-02	ci left: 7.708384e-01	ci right 7.871988e-01	k: 7791	n:10000
HIST1H1E   10000 perm   1 sec   (6939 perm/sec)   p_kst 7.791000e-01   p_cons 2.603000e-01   p_joint 9.762000e-01

Outputting figure to mutsig2_images.part000000000078/HIST1H1E.2_664_10000_0.7791_0.2603_0.9762.png
                gene_name: HIST1H1E
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 81 percent done.
HIST1H2AA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.169621e-02	ci left: 7.570693e-01	ci right 7.737758e-01	k: 7655	n:10000
KS ci ratio: 3.203654e-02	ci left: 5.898183e-01	ci right 6.091237e-01	k: 5995	n:10000
HIST1H2AA   10000 perm   1 sec   (7133 perm/sec)   p_kst 5.995000e-01   p_cons 7.655000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000078/HIST1H2AA.2_400_10000_0.5995_0.7655_1.png
                gene_name: HIST1H2AA
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
HIST1H2AE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.325833e-02	ci left: 8.912866e-01	ci right 9.032809e-01	k: 8974	n:10000
KS ci ratio: 3.308081e-02	ci left: 5.742662e-01	ci right 5.936849e-01	k: 5840	n:10000
HIST1H2AE   10000 perm   1 sec   (7345 perm/sec)   p_kst 5.840000e-01   p_cons 8.974000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000078/HIST1H2AE.2_397_10000_0.584_0.8974_1.png
                gene_name: HIST1H2AE
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
HIST1H2AH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.944204e-02	ci left: 6.297987e-01	ci right 6.487201e-01	k: 6393	n:10000
Cons ci ratio: 2.286705e-02	ci left: 7.374485e-01	ci right 7.546079e-01	k: 7461	n:10000
KS ci ratio: 4.262781e-02	ci left: 4.482980e-01	ci right 4.679264e-01	k: 4581	n:10000
HIST1H2AH   10000 perm   1 sec   (7341 perm/sec)   p_kst 4.581000e-01   p_cons 7.461000e-01   p_joint 6.393000e-01

Outputting figure to mutsig2_images.part000000000078/HIST1H2AH.2_391_10000_0.4581_0.7461_0.6393.png
                gene_name: HIST1H2AH
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 89 percent done.
HIST1H2BD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.310676e-02	ci left: 8.934402e-01	ci right 9.053260e-01	k: 8995	n:10000
KS ci ratio: 2.983253e-02	ci left: 6.236666e-01	ci right 6.426558e-01	k: 6332	n:10000
HIST1H2BD   10000 perm   1 sec   (6875 perm/sec)   p_kst 6.332000e-01   p_cons 8.995000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000078/HIST1H2BD.2_385_10000_0.6332_0.8995_1.png
                gene_name: HIST1H2BD
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
HIST1H2BG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.494214e-02	ci left: 7.028121e-01	ci right 7.206644e-01	k: 7118	n:10000
Cons ci ratio: 3.827232e-02	ci left: 5.020507e-01	ci right 5.217424e-01	k: 5119	n:10000
KS ci ratio: 2.871198e-02	ci left: 6.413636e-01	ci right 6.601485e-01	k: 6508	n:10000
HIST1H2BG   10000 perm   1 sec   (7075 perm/sec)   p_kst 6.508000e-01   p_cons 5.119000e-01   p_joint 7.118000e-01

Outputting figure to mutsig2_images.part000000000078/HIST1H2BG.2_385_10000_0.6508_0.5119_0.7118.png
                gene_name: HIST1H2BG
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 94 percent done.
HIST1H2BH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.389257e-02	ci left: 1.716291e-01	ci right 1.867583e-01	k: 1791	n:10000
KS ci ratio: 3.364905e-02	ci left: 5.659423e-01	ci right 5.854136e-01	k: 5757	n:10000
HIST1H2BH   10000 perm   1 sec   (7122 perm/sec)   p_kst 5.757000e-01   p_cons 1.791000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000078/HIST1H2BH.2_385_10000_0.5757_0.1791_1.png
                gene_name: HIST1H2BH
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
HIST1H2BI
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.773547e-02	ci left: 1.590500e-01	ci right 1.737448e-01	k: 1663	n:10000
Cons ci ratio: 7.849617e-02	ci left: 1.917059e-01	ci right 2.074695e-01	k: 1995	n:10000
KS ci ratio: 1.451179e-01	ci left: 6.304562e-02	ci right 7.300781e-02	k: 679	n:10000
HIST1H2BI   10000 perm   2 sec   (5683 perm/sec)   p_kst 6.790000e-02   p_cons 1.995000e-01   p_joint 1.663000e-01

Joint ci ratio: 5.956496e-02	ci left: 1.726714e-01	ci right 1.833224e-01	k: 3559	n:20000
Cons ci ratio: 5.535864e-02	ci left: 1.948711e-01	ci right 2.060161e-01	k: 4008	n:20000
KS ci ratio: 1.017755e-01	ci left: 6.552521e-02	ci right 7.260070e-02	k: 1380	n:20000
HIST1H2BI   20000 perm   4 sec   (5590 perm/sec)   p_kst 6.900000e-02   p_cons 2.004000e-01   p_joint 1.779500e-01

Joint ci ratio: 5.170879e-02	ci left: 1.565935e-01	ci right 1.649390e-01	k: 4822	n:30000
Cons ci ratio: 4.571192e-02	ci left: 1.923469e-01	ci right 2.013785e-01	k: 5905	n:30000
KS ci ratio: 8.416313e-02	ci left: 6.458829e-02	ci right 7.029583e-02	k: 2022	n:30000
HIST1H2BI   30000 perm   5 sec   (5481 perm/sec)   p_kst 6.740000e-02   p_cons 1.968333e-01   p_joint 1.607333e-01

Outputting figure to mutsig2_images.part000000000078/HIST1H2BI.2_385_30000_0.0674_0.19683_0.16073.png
                gene_name: HIST1H2BI
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.067 
        ci_ks_bounds_left: 0.065 
       ci_ks_bounds_right: 0.070 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.16 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000078
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 78 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1700>
Subject: Job 8004160: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1700>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000079> was used as the working directory.
Started at Sun Nov 11 15:06:40 2012
Results reported at Sun Nov 11 16:27:03 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000079.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000079.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 79  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000079.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   4923.18 sec.
    Max Memory :      4633 MB
    Max Swap   :      7081 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
79
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 79
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 79: processing genes 7058 - 7147
Calculating significance of each gene.
Using projection method.
7058	HIST1H2BK	4.129114e-02
7059	HIST1H2BL	1.798630e-01
7060	HIST1H2BM	3.258658e-01
7061	HIST1H2BN	1
7062	HIST1H2BO	8.962055e-02
7063	HIST1H3A	3.959117e-01
7064	HIST1H3B	1.452377e-02
7065	HIST1H3C	1
7066	HIST1H3D	4.853678e-01
7067	HIST1H3E	1
7068	HIST1H3F	1.395377e-01
7069	HIST1H3G	1.851950e-01
7070	HIST1H3H	2.159187e-01
7071	HIST1H3I	2.362820e-01
7072	HIST1H3J	4.079918e-01
7073	HIST1H4A	1
7074	HIST1H4B	9.606020e-03
7075	HIST1H4C	7.929258e-02
7076	HIST1H4D	2.395815e-01
7077	HIST1H4E	2.837033e-01
7078	HIST1H4F	1
7079	HIST1H4G	1
7080	HIST1H4H	1.348310e-01
7081	HIST1H4I	7.241025e-02
7082	HIST1H4J	1
7083	HIST1H4K	3.547488e-01
7084	HIST1H4L	1
7085	HIST2H2AB	2.926211e-02
7086	HIST2H2AC	1.344496e-01
7087	HIST2H2BE	1.022668e-02
7088	HIST2H2BF	1
7089	HIST2H3D	2.392295e-01
7090	HIST3H2A	4.373971e-02
7091	HIST3H2BB	2.881553e-01
7092	HIST3H3	1
7093	HIST4H4	1
7094	HIVEP1	9.967425e-01
7095	HIVEP2	1
7096	HIVEP3	9.415444e-01
7097	HJURP	8.760764e-01
7098	HK1	7.957851e-01
7099	HK2	4.131480e-01
7100	HK3	4.125256e-01
7101	HKDC1	1
7102	HKR1	5.981909e-01
7103	HLA-A	2.813941e-04
7104	HLA-B	7.332629e-01
7105	HLA-C	7.802477e-01
7106	HLA-DMA	6.125726e-01
7107	HLA-DMB	3.978428e-01
7108	HLA-DOA	6.298049e-01
7109	HLA-DOB	5.904943e-01
7110	HLA-DPA1	1.702933e-01
7111	HLA-DPB1	1
7112	HLA-DQA1	1
7113	HLA-DQA2	1
7114	HLA-DQB1	1
7115	HLA-DRA	5.029493e-01
7116	HLA-DRB1	2.282206e-01
7117	HLA-DRB5	1.143088e-01
7118	HLA-E	1
7119	HLA-F	1
7120	HLA-G	3.248609e-01
7121	HLCS	2.376344e-01
7122	HLF	1.965347e-02
7123	HLTF	7.083552e-02
7124	HLX	2.515742e-01
7125	HM13	1
7126	HMBOX1	8.235012e-01
7127	HMBS	1
7128	HMCN1	9.999997e-01
7129	HMG20A	2.755408e-01
7130	HMG20B	1
7131	HMGA1	1
7132	HMGA2	1
7133	HMGB1	1
7134	HMGB2	3.695785e-01
7135	HMGB3	1
7136	HMGB4	1.816568e-02
7137	HMGCL	1
7138	HMGCLL1	5.060412e-01
7139	HMGCR	9.464893e-01
7140	HMGCS1	8.739698e-01
7141	HMGCS2	1
7142	HMGN1	1
7143	HMGN2	1
7144	HMGN3	1
7145	HMGN4	1
7146	HMGN5	1
7147	HMGXB4	1
Done

Running MutSig 2:
Scatter job 79: processing genes 7058 - 7147
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
HMCN1
Processing conservation and coverage...
57% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.397717e-02	ci left: 3.358779e-01	ci right 3.546124e-01	k: 3452	n:10000
Cons ci ratio: 1.243397e-01	ci left: 8.475243e-02	ci right 9.608748e-02	k: 903	n:10000
KS ci ratio: 3.821111e-02	ci left: 5.028508e-01	ci right 5.225418e-01	k: 5127	n:10000
HMCN1   10000 perm   7 sec   (1379 perm/sec)   p_kst 5.127000e-01   p_cons 9.030000e-02   p_joint 3.452000e-01

Joint ci ratio: 4.584463e-02	ci left: 2.615233e-01	ci right 2.738444e-01	k: 5353	n:20000
Cons ci ratio: 8.903753e-02	ci left: 8.440281e-02	ci right 9.231734e-02	k: 1766	n:20000
KS ci ratio: 2.694030e-02	ci left: 5.072466e-01	ci right 5.211492e-01	k: 10284	n:20000
HMCN1   20000 perm   15 sec   (1311 perm/sec)   p_kst 5.142000e-01   p_cons 8.830000e-02   p_joint 2.676500e-01

Outputting figure to mutsig2_images.part000000000079/HMCN1.22_17336_20000_0.5142_0.0883_0.26765.png
                gene_name: HMCN1
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.088 
      ci_cons_bounds_left: 0.084 
     ci_cons_bounds_right: 0.092 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 3 percent done.
HIVEP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.191375e-02	ci left: 4.566832e-01	ci right 4.763364e-01	k: 4665	n:10000
Cons ci ratio: 8.010399e-02	ci left: 1.854036e-01	ci right 2.009755e-01	k: 1931	n:10000
KS ci ratio: 3.034183e-02	ci left: 6.157275e-01	ci right 6.347995e-01	k: 6253	n:10000
HIVEP1   10000 perm   3 sec   (3599 perm/sec)   p_kst 6.253000e-01   p_cons 1.931000e-01   p_joint 4.665000e-01

Outputting figure to mutsig2_images.part000000000079/HIVEP1.12_8189_10000_0.6253_0.1931_0.4665.png
                gene_name: HIVEP1
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 6 percent done.
HIVEP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.648931e-02	ci left: 5.258660e-01	ci right 5.455132e-01	k: 5357	n:10000
Cons ci ratio: 2.391782e-02	ci left: 7.198696e-01	ci right 7.373970e-01	k: 7287	n:10000
KS ci ratio: 4.799080e-02	ci left: 3.904780e-01	ci right 4.097802e-01	k: 4001	n:10000
HIVEP3   10000 perm   3 sec   (3797 perm/sec)   p_kst 4.001000e-01   p_cons 7.287000e-01   p_joint 5.357000e-01

Outputting figure to mutsig2_images.part000000000079/HIVEP3.11_7245_10000_0.4001_0.7287_0.5357.png
                gene_name: HIVEP3
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 9 percent done.
HIVEP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.659928e-02	ci left: 6.754905e-01	ci right 6.938018e-01	k: 6847	n:10000
Cons ci ratio: 1.666254e-02	ci left: 8.397935e-01	ci right 8.540038e-01	k: 8470	n:10000
KS ci ratio: 4.387659e-02	ci left: 4.340298e-01	ci right 4.536029e-01	k: 4438	n:10000
HIVEP2   10000 perm   3 sec   (3884 perm/sec)   p_kst 4.438000e-01   p_cons 8.470000e-01   p_joint 6.847000e-01

Outputting figure to mutsig2_images.part000000000079/HIVEP2.8_7365_10000_0.4438_0.847_0.6847.png
                gene_name: HIVEP2
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.69 

Current progress: 12 percent done.
HLA-A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.903033e-01	ci left: 3.681611e-02	ci right 4.465430e-02	k: 406	n:10000
Cons ci ratio: 2.560455e-01	ci left: 1.996408e-02	ci right 2.591832e-02	k: 228	n:10000
KS ci ratio: 7.686376e-02	ci left: 1.984054e-01	ci right 2.143660e-01	k: 2063	n:10000
HLA-A   10000 perm   2 sec   (5542 perm/sec)   p_kst 2.063000e-01   p_cons 2.280000e-02   p_joint 4.060000e-02

Joint ci ratio: 1.165856e-01	ci left: 5.037280e-02	ci right 5.665781e-02	k: 1069	n:20000
Cons ci ratio: 1.699858e-01	ci left: 2.369488e-02	ci right 2.814440e-02	k: 517	n:20000
KS ci ratio: 5.412857e-02	ci left: 2.020957e-01	ci right 2.133894e-01	k: 4154	n:20000
HLA-A   20000 perm   4 sec   (5078 perm/sec)   p_kst 2.077000e-01   p_cons 2.585000e-02   p_joint 5.345000e-02

Joint ci ratio: 7.881951e-02	ci left: 7.315672e-02	ci right 7.919233e-02	k: 2284	n:30000
Cons ci ratio: 1.406636e-01	ci left: 2.345587e-02	ci right 2.703688e-02	k: 756	n:30000
KS ci ratio: 4.301167e-02	ci left: 2.121481e-01	ci right 2.215068e-01	k: 6504	n:30000
HLA-A   30000 perm   6 sec   (4848 perm/sec)   p_kst 2.168000e-01   p_cons 2.520000e-02   p_joint 7.613333e-02

Joint ci ratio: 5.833067e-02	ci left: 9.848303e-02	ci right 1.044250e-01	k: 4057	n:40000
Cons ci ratio: 1.211635e-01	ci left: 2.395294e-02	ci right 2.706647e-02	k: 1019	n:40000
KS ci ratio: 3.736021e-02	ci left: 2.117768e-01	ci right 2.198645e-01	k: 8632	n:40000
HLA-A   40000 perm   8 sec   (4714 perm/sec)   p_kst 2.158000e-01   p_cons 2.547500e-02   p_joint 1.014250e-01

Joint ci ratio: 6.267462e-02	ci left: 7.028134e-02	ci right 7.484844e-02	k: 3627	n:50000
Cons ci ratio: 1.135010e-01	ci left: 2.197601e-02	ci right 2.463973e-02	k: 1164	n:50000
KS ci ratio: 3.344814e-02	ci left: 2.118827e-01	ci right 2.191103e-01	k: 10774	n:50000
HLA-A   50000 perm   11 sec   (4611 perm/sec)   p_kst 2.154800e-01   p_cons 2.328000e-02   p_joint 7.254000e-02

Joint ci ratio: 6.672084e-02	ci left: 5.258206e-02	ci right 5.622786e-02	k: 3263	n:60000
Cons ci ratio: 1.030473e-01	ci left: 2.233514e-02	ci right 2.477791e-02	k: 1412	n:60000
KS ci ratio: 3.048577e-02	ci left: 2.127293e-01	ci right 2.193315e-01	k: 12961	n:60000
HLA-A   60000 perm   13 sec   (4514 perm/sec)   p_kst 2.160167e-01   p_cons 2.353333e-02   p_joint 5.438333e-02

Joint ci ratio: 5.018062e-02	ci left: 7.817002e-02	ci right 8.220772e-02	k: 5612	n:70000
Cons ci ratio: 9.172336e-02	ci left: 2.426098e-02	ci right 2.660715e-02	k: 1779	n:70000
KS ci ratio: 2.815352e-02	ci left: 2.138231e-01	ci right 2.199432e-01	k: 15181	n:70000
HLA-A   70000 perm   16 sec   (4427 perm/sec)   p_kst 2.168714e-01   p_cons 2.541429e-02   p_joint 8.017143e-02

Outputting figure to mutsig2_images.part000000000079/HLA-A.7_1130_70000_0.21687_0.025414_0.080171.png
                gene_name: HLA-A
               theta_stop: 0.092 
                    nperm: 70000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.025 
      ci_cons_bounds_left: 0.024 
     ci_cons_bounds_right: 0.027 
                  p_joint: 0.080 
     ci_joint_bounds_left: 0.078 
    ci_joint_bounds_right: 0.082 

Current progress: 15 percent done.
HLTF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.301790e-02	ci left: 7.349217e-01	ci right 7.521362e-01	k: 7436	n:10000
Cons ci ratio: 1.769821e-02	ci left: 8.232038e-01	ci right 8.380031e-01	k: 8307	n:10000
KS ci ratio: 3.219686e-02	ci left: 5.874096e-01	ci right 6.067338e-01	k: 5971	n:10000
HLTF   10000 perm   2 sec   (5182 perm/sec)   p_kst 5.971000e-01   p_cons 8.307000e-01   p_joint 7.436000e-01

Outputting figure to mutsig2_images.part000000000079/HLTF.7_3130_10000_0.5971_0.8307_0.7436.png
                gene_name: HLTF
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 18 percent done.
HK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.169492e-02	ci left: 2.786422e-01	ci right 2.964817e-01	k: 2875	n:10000
KS ci ratio: 2.198608e-02	ci left: 7.522125e-01	ci right 7.690354e-01	k: 7607	n:10000
HK2   10000 perm   2 sec   (5296 perm/sec)   p_kst 7.607000e-01   p_cons 2.875000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000079/HK2.5_2826_10000_0.7607_0.2875_1.png
                gene_name: HK2
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 21 percent done.
HK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.142599e-01	ci left: 9.925222e-02	ci right 1.113788e-01	k: 1052	n:10000
Cons ci ratio: 2.202549e-01	ci left: 2.731161e-02	ci right 3.416536e-02	k: 306	n:10000
KS ci ratio: 4.976527e-02	ci left: 3.732585e-01	ci right 3.924098e-01	k: 3828	n:10000
HK3   10000 perm   2 sec   (5237 perm/sec)   p_kst 3.828000e-01   p_cons 3.060000e-02   p_joint 1.052000e-01

Joint ci ratio: 8.582577e-02	ci left: 9.038200e-02	ci right 9.853634e-02	k: 1888	n:20000
Cons ci ratio: 1.631610e-01	ci left: 2.575746e-02	ci right 3.038111e-02	k: 560	n:20000
KS ci ratio: 3.523014e-02	ci left: 3.755577e-01	ci right 3.890765e-01	k: 7646	n:20000
HK3   20000 perm   4 sec   (4744 perm/sec)   p_kst 3.823000e-01   p_cons 2.800000e-02   p_joint 9.440000e-02

Joint ci ratio: 7.125634e-02	ci left: 8.835881e-02	ci right 9.492052e-02	k: 2748	n:30000
Cons ci ratio: 1.350064e-01	ci left: 2.548523e-02	ci right 2.920706e-02	k: 819	n:30000
KS ci ratio: 2.883335e-02	ci left: 3.756992e-01	ci right 3.867239e-01	k: 11436	n:30000
HK3   30000 perm   7 sec   (4554 perm/sec)   p_kst 3.812000e-01   p_cons 2.730000e-02   p_joint 9.160000e-02

Joint ci ratio: 4.911966e-02	ci left: 1.339659e-01	ci right 1.407368e-01	k: 5493	n:40000
Cons ci ratio: 1.171031e-01	ci left: 2.565209e-02	ci right 2.886704e-02	k: 1089	n:40000
KS ci ratio: 2.482328e-02	ci left: 3.792298e-01	ci right 3.887870e-01	k: 15360	n:40000
HK3   40000 perm   9 sec   (4425 perm/sec)   p_kst 3.840000e-01   p_cons 2.722500e-02   p_joint 1.373250e-01

Joint ci ratio: 5.994751e-02	ci left: 7.641347e-02	ci right 8.115557e-02	k: 3938	n:50000
Cons ci ratio: 1.086348e-01	ci left: 2.399958e-02	ci right 2.677590e-02	k: 1268	n:50000
KS ci ratio: 2.224796e-02	ci left: 3.787759e-01	ci right 3.873177e-01	k: 19152	n:50000
HK3   50000 perm   12 sec   (4321 perm/sec)   p_kst 3.830400e-01   p_cons 2.536000e-02   p_joint 7.876000e-02

Joint ci ratio: 5.942617e-02	ci left: 6.560377e-02	ci right 6.963818e-02	k: 4056	n:60000
Cons ci ratio: 9.837059e-02	ci left: 2.451356e-02	ci right 2.706592e-02	k: 1546	n:60000
KS ci ratio: 2.031925e-02	ci left: 3.789247e-01	ci right 3.867199e-01	k: 22969	n:60000
HK3   60000 perm   14 sec   (4233 perm/sec)   p_kst 3.828167e-01   p_cons 2.576667e-02   p_joint 6.760000e-02

Outputting figure to mutsig2_images.part000000000079/HK3.5_2844_60000_0.38282_0.025767_0.0676.png
                gene_name: HK3
               theta_stop: 0.098 
                    nperm: 60000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.026 
      ci_cons_bounds_left: 0.025 
     ci_cons_bounds_right: 0.027 
                  p_joint: 0.068 
     ci_joint_bounds_left: 0.066 
    ci_joint_bounds_right: 0.070 

Current progress: 24 percent done.
HLCS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.301959e-02	ci left: 5.751689e-01	ci right 5.945816e-01	k: 5849	n:10000
Cons ci ratio: 5.356197e-02	ci left: 3.393548e-01	ci right 3.581334e-01	k: 3487	n:10000
KS ci ratio: 3.433571e-02	ci left: 5.560174e-01	ci right 5.755442e-01	k: 5658	n:10000
HLCS   10000 perm   2 sec   (5312 perm/sec)   p_kst 5.658000e-01   p_cons 3.487000e-01   p_joint 5.849000e-01

Outputting figure to mutsig2_images.part000000000079/HLCS.5_2217_10000_0.5658_0.3487_0.5849.png
                gene_name: HLCS
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.59 

Current progress: 27 percent done.
HLF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.344381e-02	ci left: 4.389180e-01	ci right 4.585119e-01	k: 4487	n:10000
KS ci ratio: 1.239972e-02	ci left: 9.032959e-01	ci right 9.146645e-01	k: 9091	n:10000
HLF   10000 perm   2 sec   (6154 perm/sec)   p_kst 9.091000e-01   p_cons 4.487000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000079/HLF.4_904_10000_0.9091_0.4487_1.png
                gene_name: HLF
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 30 percent done.
HLX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.190559e-01	ci left: 9.194847e-02	ci right 1.036870e-01	k: 977	n:10000
Cons ci ratio: 4.476731e-02	ci left: 4.241566e-01	ci right 4.436819e-01	k: 4339	n:10000
KS ci ratio: 1.703240e-01	ci left: 4.600180e-02	ci right 5.466254e-02	k: 502	n:10000
HLX   10000 perm   2 sec   (5888 perm/sec)   p_kst 5.020000e-02   p_cons 4.339000e-01   p_joint 9.770000e-02

Joint ci ratio: 1.051262e-01	ci left: 6.157304e-02	ci right 6.845409e-02	k: 1299	n:20000
Cons ci ratio: 3.133476e-02	ci left: 4.320566e-01	ci right 4.458611e-01	k: 8779	n:20000
KS ci ratio: 1.188317e-01	ci left: 4.852591e-02	ci right 5.470528e-02	k: 1031	n:20000
HLX   20000 perm   4 sec   (5280 perm/sec)   p_kst 5.155000e-02   p_cons 4.389500e-01   p_joint 6.495000e-02

Joint ci ratio: 7.473562e-02	ci left: 8.085208e-02	ci right 8.716209e-02	k: 2519	n:30000
Cons ci ratio: 2.572881e-02	ci left: 4.305781e-01	ci right 4.418343e-01	k: 13086	n:30000
KS ci ratio: 9.481852e-02	ci left: 5.133870e-02	ci right 5.648146e-02	k: 1616	n:30000
HLX   30000 perm   6 sec   (5035 perm/sec)   p_kst 5.386667e-02   p_cons 4.362000e-01   p_joint 8.396667e-02

Outputting figure to mutsig2_images.part000000000079/HLX.4_1483_30000_0.053867_0.4362_0.083967.png
                gene_name: HLX
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.054 
        ci_ks_bounds_left: 0.051 
       ci_ks_bounds_right: 0.056 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.084 
     ci_joint_bounds_left: 0.081 
    ci_joint_bounds_right: 0.087 

Current progress: 33 percent done.
HIST1H2BO
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.888965e-02	ci left: 4.940505e-01	ci right 5.137472e-01	k: 5039	n:10000
Cons ci ratio: 8.020691e-02	ci left: 1.850099e-01	ci right 2.005695e-01	k: 1927	n:10000
KS ci ratio: 2.442631e-02	ci left: 7.113894e-01	ci right 7.290822e-01	k: 7203	n:10000
HIST1H2BO   10000 perm   1 sec   (6825 perm/sec)   p_kst 7.203000e-01   p_cons 1.927000e-01   p_joint 5.039000e-01

Outputting figure to mutsig2_images.part000000000079/HIST1H2BO.3_385_10000_0.7203_0.1927_0.5039.png
                gene_name: HIST1H2BO
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 36 percent done.
HIST1H3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.438733e-01	ci left: 6.410846e-02	ci right 7.414431e-02	k: 690	n:10000
Cons ci ratio: 2.462640e-02	ci left: 7.080589e-01	ci right 7.258146e-01	k: 7170	n:10000
KS ci ratio: 1.618587e-01	ci left: 5.090025e-02	ci right 5.996092e-02	k: 553	n:10000
HIST1H3B   10000 perm   1 sec   (6817 perm/sec)   p_kst 5.530000e-02   p_cons 7.170000e-01   p_joint 6.900000e-02

Joint ci ratio: 1.050398e-01	ci left: 6.167058e-02	ci right 6.855652e-02	k: 1301	n:20000
Cons ci ratio: 1.730023e-02	ci left: 7.133683e-01	ci right 7.258678e-01	k: 14393	n:20000
KS ci ratio: 1.136418e-01	ci left: 5.295054e-02	ci right 5.937926e-02	k: 1122	n:20000
HIST1H3B   20000 perm   3 sec   (6021 perm/sec)   p_kst 5.610000e-02   p_cons 7.196500e-01   p_joint 6.505000e-02

Joint ci ratio: 8.090812e-02	ci left: 6.962318e-02	ci right 7.552658e-02	k: 2176	n:30000
Cons ci ratio: 1.409826e-02	ci left: 7.153171e-01	ci right 7.255069e-01	k: 21613	n:30000
KS ci ratio: 9.283262e-02	ci left: 5.348987e-02	ci right 5.872984e-02	k: 1682	n:30000
HIST1H3B   30000 perm   5 sec   (5706 perm/sec)   p_kst 5.606667e-02   p_cons 7.204333e-01   p_joint 7.253333e-02

Outputting figure to mutsig2_images.part000000000079/HIST1H3B.3_415_30000_0.056067_0.72043_0.072533.png
                gene_name: HIST1H3B
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.056 
        ci_ks_bounds_left: 0.053 
       ci_ks_bounds_right: 0.059 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.073 
     ci_joint_bounds_left: 0.070 
    ci_joint_bounds_right: 0.076 

Current progress: 39 percent done.
HIST1H3D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.309227e-02	ci left: 8.936454e-01	ci right 9.055207e-01	k: 8997	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
HIST1H3D   10000 perm   1 sec   (6842 perm/sec)   p_kst 1   p_cons 8.997000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000079/HIST1H3D.3_415_10000_1_0.8997_1.png
                gene_name: HIST1H3D
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 42 percent done.
HIST1H4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.672501e-02	ci left: 4.033262e-01	ci right 4.227245e-01	k: 4130	n:10000
Cons ci ratio: 5.305884e-02	ci left: 3.436272e-01	ci right 3.624585e-01	k: 3530	n:10000
KS ci ratio: 5.244895e-02	ci left: 3.488943e-01	ci right 3.677882e-01	k: 3583	n:10000
HIST1H4B   10000 perm   2 sec   (6597 perm/sec)   p_kst 3.583000e-01   p_cons 3.530000e-01   p_joint 4.130000e-01

Outputting figure to mutsig2_images.part000000000079/HIST1H4B.3_316_10000_0.3583_0.353_0.413.png
                gene_name: HIST1H4B
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 45 percent done.
HIST2H2BE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.306013e+00	ci left: 3.454445e-04	ci right 1.575707e-03	k: 8	n:10000
Cons ci ratio: 5.872968e-02	ci left: 2.990576e-01	ci right 3.172542e-01	k: 3081	n:10000
KS ci ratio: 1.752551e+00	ci left: 1.089969e-04	ci right 1.023839e-03	k: 4	n:10000
HIST2H2BE   10000 perm   1 sec   (6741 perm/sec)   p_kst 4.000000e-04   p_cons 3.081000e-01   p_joint 8.000000e-04

Joint ci ratio: 1.306340e+00	ci left: 1.727069e-04	ci right 7.880065e-04	k: 8	n:20000
Cons ci ratio: 4.177300e-02	ci left: 2.992690e-01	ci right 3.120875e-01	k: 6113	n:20000
KS ci ratio: 1.306340e+00	ci left: 1.727069e-04	ci right 7.880065e-04	k: 8	n:20000
HIST2H2BE   20000 perm   3 sec   (5936 perm/sec)   p_kst 4.000000e-04   p_cons 3.056500e-01   p_joint 4.000000e-04

Joint ci ratio: 9.504544e-01	ci left: 3.048758e-04	ci right 8.659558e-04	k: 16	n:30000
Cons ci ratio: 3.424462e-02	ci left: 2.987642e-01	ci right 3.092071e-01	k: 9119	n:30000
KS ci ratio: 9.504544e-01	ci left: 3.048758e-04	ci right 8.659558e-04	k: 16	n:30000
HIST2H2BE   30000 perm   5 sec   (5656 perm/sec)   p_kst 5.333333e-04   p_cons 3.039667e-01   p_joint 5.333333e-04

Joint ci ratio: 8.355065e-01	ci left: 3.250117e-04	ci right 8.024069e-04	k: 21	n:40000
Cons ci ratio: 2.969005e-02	ci left: 2.989962e-01	ci right 3.080323e-01	k: 12140	n:40000
KS ci ratio: 8.355065e-01	ci left: 3.250117e-04	ci right 8.024069e-04	k: 21	n:40000
HIST2H2BE   40000 perm   7 sec   (5451 perm/sec)   p_kst 5.250000e-04   p_cons 3.035000e-01   p_joint 5.250000e-04

Joint ci ratio: 7.277073e-01	ci left: 3.721472e-04	ci right 8.092550e-04	k: 28	n:50000
Cons ci ratio: 2.665548e-02	ci left: 2.978976e-01	ci right 3.059654e-01	k: 15096	n:50000
KS ci ratio: 7.277073e-01	ci left: 3.721472e-04	ci right 8.092550e-04	k: 28	n:50000
HIST2H2BE   50000 perm   9 sec   (5299 perm/sec)   p_kst 5.600000e-04   p_cons 3.019200e-01   p_joint 5.600000e-04

Joint ci ratio: 6.624021e-01	ci left: 3.924641e-04	ci right 7.917707e-04	k: 34	n:60000
Cons ci ratio: 2.430649e-02	ci left: 2.987096e-01	ci right 3.060762e-01	k: 18143	n:60000
KS ci ratio: 6.624021e-01	ci left: 3.924641e-04	ci right 7.917707e-04	k: 34	n:60000
HIST2H2BE   60000 perm   12 sec   (5170 perm/sec)   p_kst 5.666667e-04   p_cons 3.023833e-01   p_joint 5.666667e-04

Joint ci ratio: 6.120175e-01	ci left: 4.082673e-04	ci right 7.780431e-04	k: 40	n:70000
Cons ci ratio: 2.245781e-02	ci left: 2.998388e-01	ci right 3.066632e-01	k: 21227	n:70000
KS ci ratio: 6.120175e-01	ci left: 4.082673e-04	ci right 7.780431e-04	k: 40	n:70000
HIST2H2BE   70000 perm   14 sec   (5072 perm/sec)   p_kst 5.714286e-04   p_cons 3.032429e-01   p_joint 5.714286e-04

Joint ci ratio: 5.907960e-01	ci left: 3.890179e-04	ci right 7.239415e-04	k: 43	n:80000
Cons ci ratio: 2.093832e-02	ci left: 3.014490e-01	ci right 3.078401e-01	k: 24371	n:80000
KS ci ratio: 5.907960e-01	ci left: 3.890179e-04	ci right 7.239415e-04	k: 43	n:80000
HIST2H2BE   80000 perm   16 sec   (4978 perm/sec)   p_kst 5.375000e-04   p_cons 3.046375e-01   p_joint 5.375000e-04

Joint ci ratio: 5.842097e-01	ci left: 3.552492e-04	ci right 6.562556e-04	k: 44	n:90000
Cons ci ratio: 1.975768e-02	ci left: 3.012726e-01	ci right 3.072955e-01	k: 27385	n:90000
KS ci ratio: 5.842097e-01	ci left: 3.552492e-04	ci right 6.562556e-04	k: 44	n:90000
HIST2H2BE   90000 perm   18 sec   (4886 perm/sec)   p_kst 4.888889e-04   p_cons 3.042778e-01   p_joint 4.888889e-04

Joint ci ratio: 5.598600e-01	ci left: 3.539347e-04	ci right 6.363606e-04	k: 48	n:100000
Cons ci ratio: 1.878410e-02	ci left: 3.005215e-01	ci right 3.062300e-01	k: 30337	n:100000
KS ci ratio: 5.598600e-01	ci left: 3.539347e-04	ci right 6.363606e-04	k: 48	n:100000
HIST2H2BE   100000 perm   21 sec   (4794 perm/sec)   p_kst 4.800000e-04   p_cons 3.033700e-01   p_joint 4.800000e-04

Joint ci ratio: 5.284381e-01	ci left: 3.688069e-04	ci right 6.404820e-04	k: 54	n:110000
Cons ci ratio: 1.789946e-02	ci left: 3.009015e-01	ci right 3.063452e-01	k: 33398	n:110000
KS ci ratio: 5.284381e-01	ci left: 3.688069e-04	ci right 6.404820e-04	k: 54	n:110000
HIST2H2BE   110000 perm   23 sec   (4702 perm/sec)   p_kst 4.909091e-04   p_cons 3.036182e-01   p_joint 4.909091e-04

Joint ci ratio: 5.284493e-01	ci left: 3.380714e-04	ci right 5.871121e-04	k: 54	n:120000
Cons ci ratio: 1.716695e-02	ci left: 3.002924e-01	ci right 3.055004e-01	k: 36347	n:120000
KS ci ratio: 5.284493e-01	ci left: 3.380714e-04	ci right 5.871121e-04	k: 54	n:120000
HIST2H2BE   120000 perm   26 sec   (4613 perm/sec)   p_kst 4.500000e-04   p_cons 3.028917e-01   p_joint 4.500000e-04

Joint ci ratio: 5.059511e-01	ci left: 3.455061e-04	ci right 5.853900e-04	k: 59	n:130000
Cons ci ratio: 1.651061e-02	ci left: 2.999576e-01	ci right 3.049589e-01	k: 39319	n:130000
KS ci ratio: 5.059511e-01	ci left: 3.455061e-04	ci right 5.853900e-04	k: 59	n:130000
HIST2H2BE   130000 perm   29 sec   (4526 perm/sec)   p_kst 4.538462e-04   p_cons 3.024538e-01   p_joint 4.538462e-04

Joint ci ratio: 4.937607e-01	ci left: 3.395524e-04	ci right 5.676874e-04	k: 62	n:140000
Cons ci ratio: 1.591154e-02	ci left: 3.000089e-01	ci right 3.048279e-01	k: 42338	n:140000
KS ci ratio: 4.937607e-01	ci left: 3.395524e-04	ci right 5.676874e-04	k: 62	n:140000
HIST2H2BE   140000 perm   31 sec   (4446 perm/sec)   p_kst 4.428571e-04   p_cons 3.024143e-01   p_joint 4.428571e-04

Joint ci ratio: 4.752605e-01	ci left: 3.461768e-04	ci right 5.672167e-04	k: 67	n:150000
Cons ci ratio: 1.536744e-02	ci left: 3.002159e-01	ci right 3.048718e-01	k: 45381	n:150000
KS ci ratio: 4.752605e-01	ci left: 3.461768e-04	ci right 5.672167e-04	k: 67	n:150000
HIST2H2BE   150000 perm   34 sec   (4364 perm/sec)   p_kst 4.466667e-04   p_cons 3.025400e-01   p_joint 4.466667e-04

Joint ci ratio: 4.618710e-01	ci left: 3.465882e-04	ci right 5.596978e-04	k: 71	n:160000
Cons ci ratio: 1.486636e-02	ci left: 3.006614e-01	ci right 3.051708e-01	k: 48466	n:160000
KS ci ratio: 4.618710e-01	ci left: 3.465882e-04	ci right 5.596978e-04	k: 71	n:160000
HIST2H2BE   160000 perm   37 sec   (4300 perm/sec)   p_kst 4.437500e-04   p_cons 3.029125e-01   p_joint 4.437500e-04

Joint ci ratio: 4.437495e-01	ci left: 3.574701e-04	ci right 5.660667e-04	k: 77	n:170000
Cons ci ratio: 1.440687e-02	ci left: 3.011857e-01	ci right 3.055622e-01	k: 51573	n:170000
KS ci ratio: 4.437495e-01	ci left: 3.574701e-04	ci right 5.660667e-04	k: 77	n:170000
HIST2H2BE   170000 perm   40 sec   (4235 perm/sec)   p_kst 4.529412e-04   p_cons 3.033706e-01   p_joint 4.529412e-04

Joint ci ratio: 4.354563e-01	ci left: 3.524320e-04	ci right 5.531195e-04	k: 80	n:180000
Cons ci ratio: 1.399356e-02	ci left: 3.014707e-01	ci right 3.057245e-01	k: 54647	n:180000
KS ci ratio: 4.354563e-01	ci left: 3.524320e-04	ci right 5.531195e-04	k: 80	n:180000
HIST2H2BE   180000 perm   43 sec   (4173 perm/sec)   p_kst 4.444444e-04   p_cons 3.035944e-01   p_joint 4.444444e-04

Joint ci ratio: 4.201708e-01	ci left: 3.620623e-04	ci right 5.589666e-04	k: 86	n:190000
Cons ci ratio: 1.361050e-02	ci left: 3.018323e-01	ci right 3.059737e-01	k: 57741	n:190000
KS ci ratio: 4.201708e-01	ci left: 3.620623e-04	ci right 5.589666e-04	k: 86	n:190000
HIST2H2BE   190000 perm   46 sec   (4110 perm/sec)   p_kst 4.526316e-04   p_cons 3.039000e-01   p_joint 4.526316e-04

Joint ci ratio: 3.999863e-01	ci left: 3.843198e-04	ci right 5.806322e-04	k: 95	n:200000
Cons ci ratio: 1.326291e-02	ci left: 3.019794e-01	ci right 3.060162e-01	k: 60799	n:200000
KS ci ratio: 3.999863e-01	ci left: 3.843198e-04	ci right 5.806322e-04	k: 95	n:200000
HIST2H2BE   200000 perm   49 sec   (4049 perm/sec)   p_kst 4.750000e-04   p_cons 3.039950e-01   p_joint 4.750000e-04

Joint ci ratio: 3.842915e-01	ci left: 4.003597e-04	ci right 5.948140e-04	k: 103	n:210000
Cons ci ratio: 1.294604e-02	ci left: 3.019379e-01	ci right 3.058770e-01	k: 63820	n:210000
KS ci ratio: 3.842915e-01	ci left: 4.003597e-04	ci right 5.948140e-04	k: 103	n:210000
HIST2H2BE   210000 perm   53 sec   (3989 perm/sec)   p_kst 4.904762e-04   p_cons 3.039048e-01   p_joint 4.904762e-04

Joint ci ratio: 3.788677e-01	ci left: 3.944896e-04	ci right 5.827158e-04	k: 106	n:220000
Cons ci ratio: 1.264637e-02	ci left: 3.020510e-01	ci right 3.058996e-01	k: 66874	n:220000
KS ci ratio: 3.788677e-01	ci left: 3.944896e-04	ci right 5.827158e-04	k: 106	n:220000
HIST2H2BE   220000 perm   56 sec   (3931 perm/sec)   p_kst 4.818182e-04   p_cons 3.039727e-01   p_joint 4.818182e-04

Joint ci ratio: 3.753781e-01	ci left: 3.852089e-04	ci right 5.668972e-04	k: 108	n:230000
Cons ci ratio: 1.237345e-02	ci left: 3.019208e-01	ci right 3.056841e-01	k: 69874	n:230000
KS ci ratio: 3.753781e-01	ci left: 3.852089e-04	ci right 5.668972e-04	k: 108	n:230000
HIST2H2BE   230000 perm   60 sec   (3849 perm/sec)   p_kst 4.695652e-04   p_cons 3.038000e-01   p_joint 4.695652e-04

Joint ci ratio: 3.670537e-01	ci left: 3.880486e-04	ci right 5.660446e-04	k: 113	n:240000
Cons ci ratio: 1.210697e-02	ci left: 3.021683e-01	ci right 3.058531e-01	k: 72962	n:240000
KS ci ratio: 3.670537e-01	ci left: 3.880486e-04	ci right 5.660446e-04	k: 113	n:240000
HIST2H2BE   240000 perm   64 sec   (3771 perm/sec)   p_kst 4.708333e-04   p_cons 3.040083e-01   p_joint 4.708333e-04

Joint ci ratio: 3.548128e-01	ci left: 4.016261e-04	ci right 5.782910e-04	k: 121	n:250000
Cons ci ratio: 1.186315e-02	ci left: 3.021772e-01	ci right 3.057873e-01	k: 75995	n:250000
KS ci ratio: 3.548128e-01	ci left: 4.016261e-04	ci right 5.782910e-04	k: 121	n:250000
HIST2H2BE   250000 perm   67 sec   (3714 perm/sec)   p_kst 4.840000e-04   p_cons 3.039800e-01   p_joint 4.840000e-04

Joint ci ratio: 3.477581e-01	ci left: 4.037131e-04	ci right 5.769697e-04	k: 126	n:260000
Cons ci ratio: 1.163065e-02	ci left: 3.022898e-01	ci right 3.058300e-01	k: 79055	n:260000
KS ci ratio: 3.477581e-01	ci left: 4.037131e-04	ci right 5.769697e-04	k: 126	n:260000
HIST2H2BE   260000 perm   71 sec   (3645 perm/sec)   p_kst 4.846154e-04   p_cons 3.040577e-01   p_joint 4.846154e-04

Joint ci ratio: 3.398228e-01	ci left: 4.090649e-04	ci right 5.797335e-04	k: 132	n:270000
Cons ci ratio: 1.141360e-02	ci left: 3.023096e-01	ci right 3.057835e-01	k: 82092	n:270000
KS ci ratio: 3.398228e-01	ci left: 4.090649e-04	ci right 5.797335e-04	k: 132	n:270000
HIST2H2BE   270000 perm   75 sec   (3595 perm/sec)   p_kst 4.888889e-04   p_cons 3.040444e-01   p_joint 4.888889e-04

Joint ci ratio: 3.277226e-01	ci left: 4.271785e-04	ci right 5.977232e-04	k: 142	n:280000
Cons ci ratio: 1.120155e-02	ci left: 3.025817e-01	ci right 3.059937e-01	k: 85200	n:280000
KS ci ratio: 3.277226e-01	ci left: 4.271785e-04	ci right 5.977232e-04	k: 142	n:280000
HIST2H2BE   280000 perm   79 sec   (3549 perm/sec)   p_kst 5.071429e-04   p_cons 3.042857e-01   p_joint 5.071429e-04

Joint ci ratio: 3.178701e-01	ci left: 4.409694e-04	ci right 6.106513e-04	k: 151	n:290000
Cons ci ratio: 1.100707e-02	ci left: 3.025981e-01	ci right 3.059506e-01	k: 88239	n:290000
KS ci ratio: 3.178701e-01	ci left: 4.409694e-04	ci right 6.106513e-04	k: 151	n:290000
HIST2H2BE   290000 perm   83 sec   (3504 perm/sec)   p_kst 5.206897e-04   p_cons 3.042724e-01   p_joint 5.206897e-04

Joint ci ratio: 3.117758e-01	ci left: 4.446906e-04	ci right 6.118710e-04	k: 157	n:300000
Cons ci ratio: 1.082682e-02	ci left: 3.024408e-01	ci right 3.057363e-01	k: 91226	n:300000
KS ci ratio: 3.117758e-01	ci left: 4.446906e-04	ci right 6.118710e-04	k: 157	n:300000
HIST2H2BE   300000 perm   87 sec   (3431 perm/sec)   p_kst 5.233333e-04   p_cons 3.040867e-01   p_joint 5.233333e-04

Joint ci ratio: 3.050899e-01	ci left: 4.511793e-04	ci right 6.164555e-04	k: 164	n:310000
Cons ci ratio: 1.065075e-02	ci left: 3.024680e-01	ci right 3.057099e-01	k: 94267	n:310000
KS ci ratio: 3.050899e-01	ci left: 4.511793e-04	ci right 6.164555e-04	k: 164	n:310000
HIST2H2BE   310000 perm   92 sec   (3381 perm/sec)   p_kst 5.290323e-04   p_cons 3.040871e-01   p_joint 5.290323e-04

Joint ci ratio: 3.005699e-01	ci left: 4.515179e-04	ci right 6.139998e-04	k: 169	n:320000
Cons ci ratio: 1.048525e-02	ci left: 3.024034e-01	ci right 3.055939e-01	k: 97279	n:320000
KS ci ratio: 3.005699e-01	ci left: 4.515179e-04	ci right 6.139998e-04	k: 169	n:320000
HIST2H2BE   320000 perm   96 sec   (3332 perm/sec)   p_kst 5.281250e-04   p_cons 3.039969e-01   p_joint 5.281250e-04

Joint ci ratio: 2.988188e-01	ci left: 4.434403e-04	ci right 6.019092e-04	k: 171	n:330000
Cons ci ratio: 1.033582e-02	ci left: 3.019921e-01	ci right 3.051326e-01	k: 100175	n:330000
KS ci ratio: 2.988188e-01	ci left: 4.434403e-04	ci right 6.019092e-04	k: 171	n:330000
HIST2H2BE   330000 perm   100 sec   (3285 perm/sec)   p_kst 5.181818e-04   p_cons 3.035606e-01   p_joint 5.181818e-04

Joint ci ratio: 2.945681e-01	ci left: 4.440094e-04	ci right 6.000032e-04	k: 176	n:340000
Cons ci ratio: 1.019088e-02	ci left: 3.016758e-01	ci right 3.047688e-01	k: 103095	n:340000
KS ci ratio: 2.945681e-01	ci left: 4.440094e-04	ci right 6.000032e-04	k: 176	n:340000
HIST2H2BE   340000 perm   105 sec   (3245 perm/sec)   p_kst 5.176471e-04   p_cons 3.032206e-01   p_joint 5.176471e-04

Joint ci ratio: 2.896986e-01	ci left: 4.472104e-04	ci right 6.012555e-04	k: 182	n:350000
Cons ci ratio: 1.004209e-02	ci left: 3.017887e-01	ci right 3.048374e-01	k: 106159	n:350000
KS ci ratio: 2.896986e-01	ci left: 4.472104e-04	ci right 6.012555e-04	k: 182	n:350000
HIST2H2BE   350000 perm   109 sec   (3207 perm/sec)   p_kst 5.200000e-04   p_cons 3.033114e-01   p_joint 5.200000e-04

Joint ci ratio: 2.835656e-01	ci left: 4.554131e-04	ci right 6.083688e-04	k: 190	n:360000
Cons ci ratio: 9.900925e-03	ci left: 3.018402e-01	ci right 3.048463e-01	k: 109203	n:360000
KS ci ratio: 2.835656e-01	ci left: 4.554131e-04	ci right 6.083688e-04	k: 190	n:360000
HIST2H2BE   360000 perm   114 sec   (3169 perm/sec)   p_kst 5.277778e-04   p_cons 3.033417e-01   p_joint 5.277778e-04

Joint ci ratio: 2.799255e-01	ci left: 4.556635e-04	ci right 6.063922e-04	k: 195	n:370000
Cons ci ratio: 9.766178e-03	ci left: 3.018622e-01	ci right 3.048274e-01	k: 112237	n:370000
KS ci ratio: 2.799255e-01	ci left: 4.556635e-04	ci right 6.063922e-04	k: 195	n:370000
HIST2H2BE   370000 perm   118 sec   (3132 perm/sec)   p_kst 5.270270e-04   p_cons 3.033432e-01   p_joint 5.270270e-04

Joint ci ratio: 2.764220e-01	ci left: 4.559125e-04	ci right 6.045079e-04	k: 200	n:380000
Cons ci ratio: 9.636126e-03	ci left: 3.019122e-01	ci right 3.048382e-01	k: 115282	n:380000
KS ci ratio: 2.764220e-01	ci left: 4.559125e-04	ci right 6.045079e-04	k: 200	n:380000
HIST2H2BE   380000 perm   123 sec   (3095 perm/sec)   p_kst 5.263158e-04   p_cons 3.033737e-01   p_joint 5.263158e-04

Joint ci ratio: 2.730469e-01	ci left: 4.561599e-04	ci right 6.027091e-04	k: 205	n:390000
Cons ci ratio: 9.512520e-03	ci left: 3.018985e-01	ci right 3.047865e-01	k: 118303	n:390000
KS ci ratio: 2.730469e-01	ci left: 4.561599e-04	ci right 6.027091e-04	k: 205	n:390000
HIST2H2BE   390000 perm   127 sec   (3062 perm/sec)   p_kst 5.256410e-04   p_cons 3.033410e-01   p_joint 5.256410e-04

Joint ci ratio: 2.704343e-01	ci left: 4.540746e-04	ci right 5.983212e-04	k: 209	n:400000
Cons ci ratio: 9.395664e-03	ci left: 3.017907e-01	ci right 3.046421e-01	k: 121286	n:400000
KS ci ratio: 2.704343e-01	ci left: 4.540746e-04	ci right 5.983212e-04	k: 209	n:400000
HIST2H2BE   400000 perm   132 sec   (3024 perm/sec)   p_kst 5.225000e-04   p_cons 3.032150e-01   p_joint 5.225000e-04

Joint ci ratio: 2.685239e-01	ci left: 4.498222e-04	ci right 5.915384e-04	k: 212	n:410000
Cons ci ratio: 9.277707e-03	ci left: 3.019296e-01	ci right 3.047463e-01	k: 124368	n:410000
KS ci ratio: 2.685239e-01	ci left: 4.498222e-04	ci right 5.915384e-04	k: 212	n:410000
HIST2H2BE   410000 perm   137 sec   (2992 perm/sec)   p_kst 5.170732e-04   p_cons 3.033366e-01   p_joint 5.170732e-04

Joint ci ratio: 2.666533e-01	ci left: 4.457757e-04	ci right 5.850753e-04	k: 215	n:420000
Cons ci ratio: 9.166252e-03	ci left: 3.019623e-01	ci right 3.047452e-01	k: 127408	n:420000
KS ci ratio: 2.666533e-01	ci left: 4.457757e-04	ci right 5.850753e-04	k: 215	n:420000
HIST2H2BE   420000 perm   142 sec   (2959 perm/sec)   p_kst 5.119048e-04   p_cons 3.033524e-01   p_joint 5.119048e-04

Joint ci ratio: 2.642184e-01	ci left: 4.440922e-04	ci right 5.813889e-04	k: 219	n:430000
Cons ci ratio: 9.061511e-03	ci left: 3.018635e-01	ci right 3.046136e-01	k: 130392	n:430000
KS ci ratio: 2.642184e-01	ci left: 4.440922e-04	ci right 5.813889e-04	k: 219	n:430000
HIST2H2BE   430000 perm   147 sec   (2926 perm/sec)   p_kst 5.093023e-04   p_cons 3.032372e-01   p_joint 5.093023e-04

Joint ci ratio: 2.624358e-01	ci left: 4.403672e-04	ci right 5.754429e-04	k: 222	n:440000
Cons ci ratio: 8.956280e-03	ci left: 3.019578e-01	ci right 3.046766e-01	k: 133459	n:440000
KS ci ratio: 2.624358e-01	ci left: 4.403672e-04	ci right 5.754429e-04	k: 222	n:440000
HIST2H2BE   440000 perm   152 sec   (2895 perm/sec)   p_kst 5.045455e-04   p_cons 3.033159e-01   p_joint 5.045455e-04

Joint ci ratio: 2.567410e-01	ci left: 4.513581e-04	ci right 5.863196e-04	k: 232	n:450000
Cons ci ratio: 8.856635e-03	ci left: 3.019526e-01	ci right 3.046410e-01	k: 136483	n:450000
KS ci ratio: 2.567410e-01	ci left: 4.513581e-04	ci right 5.863196e-04	k: 232	n:450000
HIST2H2BE   450000 perm   157 sec   (2865 perm/sec)   p_kst 5.155556e-04   p_cons 3.032956e-01   p_joint 5.155556e-04

Joint ci ratio: 2.556470e-01	ci left: 4.456145e-04	ci right 5.782002e-04	k: 234	n:460000
Cons ci ratio: 8.762181e-03	ci left: 3.018545e-01	ci right 3.045132e-01	k: 139464	n:460000
KS ci ratio: 2.556470e-01	ci left: 4.456145e-04	ci right 5.782002e-04	k: 234	n:460000
HIST2H2BE   460000 perm   162 sec   (2835 perm/sec)   p_kst 5.086957e-04   p_cons 3.031826e-01   p_joint 5.086957e-04

Joint ci ratio: 2.508869e-01	ci left: 4.540672e-04	ci right 5.862595e-04	k: 243	n:470000
Cons ci ratio: 8.669157e-03	ci left: 3.018351e-01	ci right 3.044652e-01	k: 142480	n:470000
KS ci ratio: 2.508869e-01	ci left: 4.540672e-04	ci right 5.862595e-04	k: 243	n:470000
HIST2H2BE   470000 perm   168 sec   (2804 perm/sec)   p_kst 5.170213e-04   p_cons 3.031489e-01   p_joint 5.170213e-04

Joint ci ratio: 2.478577e-01	ci left: 4.563264e-04	ci right 5.873252e-04	k: 249	n:480000
Cons ci ratio: 8.578695e-03	ci left: 3.018333e-01	ci right 3.044358e-01	k: 145504	n:480000
KS ci ratio: 2.478577e-01	ci left: 4.563264e-04	ci right 5.873252e-04	k: 249	n:480000
HIST2H2BE   480000 perm   173 sec   (2777 perm/sec)   p_kst 5.187500e-04   p_cons 3.031333e-01   p_joint 5.187500e-04

Joint ci ratio: 2.449357e-01	ci left: 4.585026e-04	ci right 5.883383e-04	k: 255	n:490000
Cons ci ratio: 8.489778e-03	ci left: 3.018928e-01	ci right 3.044687e-01	k: 148558	n:490000
KS ci ratio: 2.449357e-01	ci left: 4.585026e-04	ci right 5.883383e-04	k: 255	n:490000
HIST2H2BE   490000 perm   178 sec   (2747 perm/sec)   p_kst 5.204082e-04   p_cons 3.031796e-01   p_joint 5.204082e-04

Joint ci ratio: 2.430446e-01	ci left: 4.568434e-04	ci right 5.850598e-04	k: 259	n:500000
Cons ci ratio: 8.403688e-03	ci left: 3.019441e-01	ci right 3.044942e-01	k: 151609	n:500000
KS ci ratio: 2.430446e-01	ci left: 4.568434e-04	ci right 5.850598e-04	k: 259	n:500000
HIST2H2BE   500000 perm   184 sec   (2719 perm/sec)   p_kst 5.180000e-04   p_cons 3.032180e-01   p_joint 5.180000e-04

Joint ci ratio: 2.421160e-01	ci left: 4.515687e-04	ci right 5.777477e-04	k: 261	n:510000
Cons ci ratio: 8.318506e-03	ci left: 3.020777e-01	ci right 3.046030e-01	k: 154703	n:510000
KS ci ratio: 2.421160e-01	ci left: 4.515687e-04	ci right 5.777477e-04	k: 261	n:510000
HIST2H2BE   510000 perm   189 sec   (2693 perm/sec)   p_kst 5.117647e-04   p_cons 3.033392e-01   p_joint 5.117647e-04

Joint ci ratio: 2.411978e-01	ci left: 4.464978e-04	ci right 5.707160e-04	k: 263	n:520000
Cons ci ratio: 8.237960e-03	ci left: 3.020987e-01	ci right 3.045996e-01	k: 157741	n:520000
KS ci ratio: 2.411978e-01	ci left: 4.464978e-04	ci right 5.707160e-04	k: 263	n:520000
HIST2H2BE   520000 perm   195 sec   (2667 perm/sec)   p_kst 5.057692e-04   p_cons 3.033481e-01   p_joint 5.057692e-04

Joint ci ratio: 2.393913e-01	ci left: 4.451661e-04	ci right 5.679486e-04	k: 267	n:530000
Cons ci ratio: 8.161786e-03	ci left: 3.020117e-01	ci right 3.044886e-01	k: 160722	n:530000
KS ci ratio: 2.393913e-01	ci left: 4.451661e-04	ci right 5.679486e-04	k: 267	n:530000
HIST2H2BE   530000 perm   201 sec   (2641 perm/sec)   p_kst 5.037736e-04   p_cons 3.032491e-01   p_joint 5.037736e-04

Joint ci ratio: 2.385037e-01	ci left: 4.404041e-04	ci right 5.613562e-04	k: 269	n:540000
Cons ci ratio: 8.087970e-03	ci left: 3.019131e-01	ci right 3.043667e-01	k: 163695	n:540000
KS ci ratio: 2.385037e-01	ci left: 4.404041e-04	ci right 5.613562e-04	k: 269	n:540000
HIST2H2BE   540000 perm   206 sec   (2615 perm/sec)   p_kst 4.981481e-04   p_cons 3.031389e-01   p_joint 4.981481e-04

Joint ci ratio: 2.363256e-01	ci left: 4.409470e-04	ci right 5.607804e-04	k: 274	n:550000
Cons ci ratio: 8.012568e-03	ci left: 3.020054e-01	ci right 3.044367e-01	k: 166771	n:550000
KS ci ratio: 2.363256e-01	ci left: 4.409470e-04	ci right 5.607804e-04	k: 274	n:550000
HIST2H2BE   550000 perm   212 sec   (2590 perm/sec)   p_kst 4.981818e-04   p_cons 3.032200e-01   p_joint 4.981818e-04

Joint ci ratio: 2.342060e-01	ci left: 4.414752e-04	ci right 5.602203e-04	k: 279	n:560000
Cons ci ratio: 7.940142e-03	ci left: 3.020462e-01	ci right 3.044558e-01	k: 169820	n:560000
KS ci ratio: 2.342060e-01	ci left: 4.414752e-04	ci right 5.602203e-04	k: 279	n:560000
HIST2H2BE   560000 perm   218 sec   (2565 perm/sec)   p_kst 4.982143e-04   p_cons 3.032500e-01   p_joint 4.982143e-04

Joint ci ratio: 2.317361e-01	ci left: 4.436421e-04	ci right 5.615314e-04	k: 285	n:570000
Cons ci ratio: 7.868959e-03	ci left: 3.021225e-01	ci right 3.045110e-01	k: 172890	n:570000
KS ci ratio: 2.317361e-01	ci left: 4.436421e-04	ci right 5.615314e-04	k: 285	n:570000
HIST2H2BE   570000 perm   224 sec   (2539 perm/sec)   p_kst 5.000000e-04   p_cons 3.033158e-01   p_joint 5.000000e-04

Joint ci ratio: 2.301326e-01	ci left: 4.424907e-04	ci right 5.591447e-04	k: 289	n:580000
Cons ci ratio: 7.799306e-03	ci left: 3.022153e-01	ci right 3.045832e-01	k: 175971	n:580000
KS ci ratio: 2.301326e-01	ci left: 4.424907e-04	ci right 5.591447e-04	k: 289	n:580000
HIST2H2BE   580000 perm   231 sec   (2512 perm/sec)   p_kst 4.982759e-04   p_cons 3.033983e-01   p_joint 4.982759e-04

Joint ci ratio: 2.289518e-01	ci left: 4.397831e-04	ci right 5.550444e-04	k: 292	n:590000
Cons ci ratio: 7.732897e-03	ci left: 3.022271e-01	ci right 3.045749e-01	k: 179006	n:590000
KS ci ratio: 2.289518e-01	ci left: 4.397831e-04	ci right 5.550444e-04	k: 292	n:590000
HIST2H2BE   590000 perm   237 sec   (2490 perm/sec)   p_kst 4.949153e-04   p_cons 3.034000e-01   p_joint 4.949153e-04

Joint ci ratio: 2.262645e-01	ci left: 4.434550e-04	ci right 5.581243e-04	k: 299	n:600000
Cons ci ratio: 7.671362e-03	ci left: 3.020621e-01	ci right 3.043898e-01	k: 181935	n:600000
KS ci ratio: 2.262645e-01	ci left: 4.434550e-04	ci right 5.581243e-04	k: 299	n:600000
HIST2H2BE   600000 perm   243 sec   (2467 perm/sec)   p_kst 4.983333e-04   p_cons 3.032250e-01   p_joint 4.983333e-04

Joint ci ratio: 2.255146e-01	ci left: 4.392783e-04	ci right 5.524387e-04	k: 301	n:610000
Cons ci ratio: 7.606636e-03	ci left: 3.021597e-01	ci right 3.044684e-01	k: 185021	n:610000
KS ci ratio: 2.255146e-01	ci left: 4.392783e-04	ci right 5.524387e-04	k: 301	n:610000
HIST2H2BE   610000 perm   250 sec   (2445 perm/sec)   p_kst 4.934426e-04   p_cons 3.033131e-01   p_joint 4.934426e-04

Joint ci ratio: 2.244031e-01	ci left: 4.367592e-04	ci right 5.486395e-04	k: 304	n:620000
Cons ci ratio: 7.544155e-03	ci left: 3.022187e-01	ci right 3.045089e-01	k: 188085	n:620000
KS ci ratio: 2.244031e-01	ci left: 4.367592e-04	ci right 5.486395e-04	k: 304	n:620000
HIST2H2BE   620000 perm   256 sec   (2421 perm/sec)   p_kst 4.903226e-04   p_cons 3.033629e-01   p_joint 4.903226e-04

Joint ci ratio: 2.229461e-01	ci left: 4.358199e-04	ci right 5.466353e-04	k: 308	n:630000
Cons ci ratio: 7.481221e-03	ci left: 3.023870e-01	ci right 3.046593e-01	k: 191219	n:630000
KS ci ratio: 2.229461e-01	ci left: 4.358199e-04	ci right 5.466353e-04	k: 308	n:630000
HIST2H2BE   630000 perm   262 sec   (2400 perm/sec)   p_kst 4.888889e-04   p_cons 3.035222e-01   p_joint 4.888889e-04

Joint ci ratio: 2.201144e-01	ci left: 4.408168e-04	ci right 5.512864e-04	k: 316	n:640000
Cons ci ratio: 7.422441e-03	ci left: 3.024018e-01	ci right 3.046562e-01	k: 194258	n:640000
KS ci ratio: 2.201144e-01	ci left: 4.408168e-04	ci right 5.512864e-04	k: 316	n:640000
HIST2H2BE   640000 perm   269 sec   (2377 perm/sec)   p_kst 4.937500e-04   p_cons 3.035281e-01   p_joint 4.937500e-04

Joint ci ratio: 2.197687e-01	ci left: 4.354886e-04	ci right 5.444283e-04	k: 317	n:650000
Cons ci ratio: 7.364998e-03	ci left: 3.024177e-01	ci right 3.046548e-01	k: 197298	n:650000
KS ci ratio: 2.197687e-01	ci left: 4.354886e-04	ci right 5.444283e-04	k: 317	n:650000
HIST2H2BE   650000 perm   276 sec   (2356 perm/sec)   p_kst 4.876923e-04   p_cons 3.035354e-01   p_joint 4.876923e-04

Joint ci ratio: 2.173888e-01	ci left: 4.389158e-04	ci right 5.473651e-04	k: 324	n:660000
Cons ci ratio: 7.308397e-03	ci left: 3.024605e-01	ci right 3.046806e-01	k: 200356	n:660000
KS ci ratio: 2.173888e-01	ci left: 4.389158e-04	ci right 5.473651e-04	k: 324	n:660000
HIST2H2BE   660000 perm   283 sec   (2335 perm/sec)   p_kst 4.909091e-04   p_cons 3.035697e-01   p_joint 4.909091e-04

Joint ci ratio: 2.157356e-01	ci left: 4.394228e-04	ci right 5.470623e-04	k: 329	n:670000
Cons ci ratio: 7.254668e-03	ci left: 3.024096e-01	ci right 3.046130e-01	k: 203352	n:670000
KS ci ratio: 2.157356e-01	ci left: 4.394228e-04	ci right 5.470623e-04	k: 329	n:670000
HIST2H2BE   670000 perm   289 sec   (2315 perm/sec)   p_kst 4.910448e-04   p_cons 3.035104e-01   p_joint 4.910448e-04

Joint ci ratio: 2.134829e-01	ci left: 4.427016e-04	ci right 5.498637e-04	k: 336	n:680000
Cons ci ratio: 7.201206e-03	ci left: 3.024132e-01	ci right 3.046002e-01	k: 206384	n:680000
KS ci ratio: 2.134829e-01	ci left: 4.427016e-04	ci right 5.498637e-04	k: 336	n:680000
HIST2H2BE   680000 perm   296 sec   (2294 perm/sec)   p_kst 4.941176e-04   p_cons 3.035059e-01   p_joint 4.941176e-04

Joint ci ratio: 2.125393e-01	ci left: 4.404015e-04	ci right 5.464742e-04	k: 339	n:690000
Cons ci ratio: 7.149692e-03	ci left: 3.023704e-01	ci right 3.045414e-01	k: 209384	n:690000
KS ci ratio: 2.125393e-01	ci left: 4.404015e-04	ci right 5.464742e-04	k: 339	n:690000
HIST2H2BE   690000 perm   303 sec   (2275 perm/sec)   p_kst 4.913043e-04   p_cons 3.034551e-01   p_joint 4.913043e-04

Joint ci ratio: 2.113001e-01	ci left: 4.395211e-04	ci right 5.446845e-04	k: 343	n:700000
Cons ci ratio: 7.100133e-03	ci left: 3.022775e-01	ci right 3.044327e-01	k: 212348	n:700000
KS ci ratio: 2.113001e-01	ci left: 4.395211e-04	ci right 5.446845e-04	k: 343	n:700000
HIST2H2BE   700000 perm   310 sec   (2256 perm/sec)   p_kst 4.900000e-04   p_cons 3.033543e-01   p_joint 4.900000e-04

Joint ci ratio: 2.094810e-01	ci left: 4.413361e-04	ci right 5.459082e-04	k: 349	n:710000
Cons ci ratio: 7.051401e-03	ci left: 3.021985e-01	ci right 3.043383e-01	k: 215320	n:710000
KS ci ratio: 2.094810e-01	ci left: 4.413361e-04	ci right 5.459082e-04	k: 349	n:710000
HIST2H2BE   710000 perm   317 sec   (2237 perm/sec)   p_kst 4.915493e-04   p_cons 3.032676e-01   p_joint 4.915493e-04

Joint ci ratio: 2.077081e-01	ci left: 4.431046e-04	ci right 5.470941e-04	k: 355	n:720000
Cons ci ratio: 7.002162e-03	ci left: 3.022119e-01	ci right 3.043369e-01	k: 218357	n:720000
KS ci ratio: 2.077081e-01	ci left: 4.431046e-04	ci right 5.470941e-04	k: 355	n:720000
HIST2H2BE   720000 perm   325 sec   (2218 perm/sec)   p_kst 4.930556e-04   p_cons 3.032736e-01   p_joint 4.930556e-04

Joint ci ratio: 2.054125e-01	ci left: 4.474268e-04	ci right 5.511244e-04	k: 363	n:730000
Cons ci ratio: 6.953896e-03	ci left: 3.022278e-01	ci right 3.043381e-01	k: 221396	n:730000
KS ci ratio: 2.054125e-01	ci left: 4.474268e-04	ci right 5.511244e-04	k: 363	n:730000
HIST2H2BE   730000 perm   332 sec   (2200 perm/sec)   p_kst 4.972603e-04   p_cons 3.032822e-01   p_joint 4.972603e-04

Joint ci ratio: 2.037400e-01	ci left: 4.490733e-04	ci right 5.521997e-04	k: 369	n:740000
Cons ci ratio: 6.906283e-03	ci left: 3.022635e-01	ci right 3.043596e-01	k: 224450	n:740000
KS ci ratio: 2.037400e-01	ci left: 4.490733e-04	ci right 5.521997e-04	k: 369	n:740000
HIST2H2BE   740000 perm   339 sec   (2181 perm/sec)   p_kst 4.986486e-04   p_cons 3.033108e-01   p_joint 4.986486e-04

Joint ci ratio: 2.029193e-01	ci left: 4.468820e-04	ci right 5.490405e-04	k: 372	n:750000
Cons ci ratio: 6.862427e-03	ci left: 3.021265e-01	ci right 3.042083e-01	k: 227375	n:750000
KS ci ratio: 2.029193e-01	ci left: 4.468820e-04	ci right 5.490405e-04	k: 372	n:750000
HIST2H2BE   750000 perm   347 sec   (2163 perm/sec)   p_kst 4.960000e-04   p_cons 3.031667e-01   p_joint 4.960000e-04

Joint ci ratio: 2.015728e-01	ci left: 4.472477e-04	ci right 5.487279e-04	k: 377	n:760000
Cons ci ratio: 6.816317e-03	ci left: 3.021838e-01	ci right 3.042519e-01	k: 230445	n:760000
KS ci ratio: 2.015728e-01	ci left: 4.472477e-04	ci right 5.487279e-04	k: 377	n:760000
HIST2H2BE   760000 perm   354 sec   (2145 perm/sec)   p_kst 4.960526e-04   p_cons 3.032171e-01   p_joint 4.960526e-04

Joint ci ratio: 1.999916e-01	ci left: 4.488398e-04	ci right 5.497849e-04	k: 383	n:770000
Cons ci ratio: 6.771456e-03	ci left: 3.022189e-01	ci right 3.042735e-01	k: 233499	n:770000
KS ci ratio: 1.999916e-01	ci left: 4.488398e-04	ci right 5.497849e-04	k: 383	n:770000
HIST2H2BE   770000 perm   362 sec   (2128 perm/sec)   p_kst 4.974026e-04   p_cons 3.032455e-01   p_joint 4.974026e-04

Joint ci ratio: 1.987022e-01	ci left: 4.491758e-04	ci right 5.494662e-04	k: 388	n:780000
Cons ci ratio: 6.726083e-03	ci left: 3.023401e-01	ci right 3.043818e-01	k: 236621	n:780000
KS ci ratio: 1.987022e-01	ci left: 4.491758e-04	ci right 5.494662e-04	k: 388	n:780000
HIST2H2BE   780000 perm   370 sec   (2111 perm/sec)   p_kst 4.974359e-04   p_cons 3.033603e-01   p_joint 4.974359e-04

Joint ci ratio: 1.976885e-01	ci left: 4.483020e-04	ci right 5.478252e-04	k: 392	n:790000
Cons ci ratio: 6.683249e-03	ci left: 3.023547e-01	ci right 3.043834e-01	k: 239661	n:790000
KS ci ratio: 1.976885e-01	ci left: 4.483020e-04	ci right 5.478252e-04	k: 392	n:790000
HIST2H2BE   790000 perm   377 sec   (2094 perm/sec)   p_kst 4.962025e-04   p_cons 3.033684e-01   p_joint 4.962025e-04

Joint ci ratio: 1.969385e-01	ci left: 4.462630e-04	ci right 5.449125e-04	k: 395	n:800000
Cons ci ratio: 6.639947e-03	ci left: 3.024501e-01	ci right 3.044663e-01	k: 242766	n:800000
KS ci ratio: 1.969385e-01	ci left: 4.462630e-04	ci right 5.449125e-04	k: 395	n:800000
HIST2H2BE   800000 perm   385 sec   (2077 perm/sec)   p_kst 4.937500e-04   p_cons 3.034575e-01   p_joint 4.937500e-04

Joint ci ratio: 1.952204e-01	ci left: 4.489713e-04	ci right 5.472508e-04	k: 402	n:810000
Cons ci ratio: 6.598073e-03	ci left: 3.025050e-01	ci right 3.045088e-01	k: 245840	n:810000
KS ci ratio: 1.952204e-01	ci left: 4.489713e-04	ci right 5.472508e-04	k: 402	n:810000
HIST2H2BE   810000 perm   393 sec   (2062 perm/sec)   p_kst 4.962963e-04   p_cons 3.035062e-01   p_joint 4.962963e-04

Joint ci ratio: 1.942588e-01	ci left: 4.481363e-04	ci right 5.456926e-04	k: 406	n:820000
Cons ci ratio: 6.556717e-03	ci left: 3.025756e-01	ci right 3.045672e-01	k: 248928	n:820000
KS ci ratio: 1.942588e-01	ci left: 4.481363e-04	ci right 5.456926e-04	k: 406	n:820000
HIST2H2BE   820000 perm   401 sec   (2046 perm/sec)   p_kst 4.951220e-04   p_cons 3.035707e-01   p_joint 4.951220e-04

Joint ci ratio: 1.937836e-01	ci left: 4.450296e-04	ci right 5.416446e-04	k: 408	n:830000
Cons ci ratio: 6.518003e-03	ci left: 3.025230e-01	ci right 3.045025e-01	k: 251915	n:830000
KS ci ratio: 1.937836e-01	ci left: 4.450296e-04	ci right 5.416446e-04	k: 408	n:830000
HIST2H2BE   830000 perm   409 sec   (2031 perm/sec)   p_kst 4.915663e-04   p_cons 3.035120e-01   p_joint 4.915663e-04

Joint ci ratio: 1.919155e-01	ci left: 4.487957e-04	ci right 5.451794e-04	k: 416	n:840000
Cons ci ratio: 6.478235e-03	ci left: 3.025847e-01	ci right 3.045524e-01	k: 254997	n:840000
KS ci ratio: 1.919155e-01	ci left: 4.487957e-04	ci right 5.451794e-04	k: 416	n:840000
HIST2H2BE   840000 perm   417 sec   (2015 perm/sec)   p_kst 4.952381e-04   p_cons 3.035679e-01   p_joint 4.952381e-04

Joint ci ratio: 1.912290e-01	ci left: 4.468758e-04	ci right 5.424641e-04	k: 419	n:850000
Cons ci ratio: 6.438755e-03	ci left: 3.026731e-01	ci right 3.046294e-01	k: 258103	n:850000
KS ci ratio: 1.912290e-01	ci left: 4.468758e-04	ci right 5.424641e-04	k: 419	n:850000
HIST2H2BE   850000 perm   425 sec   (1999 perm/sec)   p_kst 4.929412e-04   p_cons 3.036506e-01   p_joint 4.929412e-04

Joint ci ratio: 1.894331e-01	ci left: 4.505388e-04	ci right 5.459013e-04	k: 427	n:860000
Cons ci ratio: 6.401326e-03	ci left: 3.026713e-01	ci right 3.046161e-01	k: 261133	n:860000
KS ci ratio: 1.894331e-01	ci left: 4.505388e-04	ci right 5.459013e-04	k: 427	n:860000
HIST2H2BE   860000 perm   434 sec   (1983 perm/sec)   p_kst 4.965116e-04   p_cons 3.036430e-01   p_joint 4.965116e-04

Joint ci ratio: 1.874718e-01	ci left: 4.552171e-04	ci right 5.504588e-04	k: 436	n:870000
Cons ci ratio: 6.363971e-03	ci left: 3.027074e-01	ci right 3.046411e-01	k: 264196	n:870000
KS ci ratio: 1.874718e-01	ci left: 4.552171e-04	ci right 5.504588e-04	k: 436	n:870000
HIST2H2BE   870000 perm   442 sec   (1968 perm/sec)   p_kst 5.011494e-04   p_cons 3.036736e-01   p_joint 5.011494e-04

Joint ci ratio: 1.861978e-01	ci left: 4.565435e-04	ci right 5.513402e-04	k: 442	n:880000
Cons ci ratio: 6.328197e-03	ci left: 3.026803e-01	ci right 3.046029e-01	k: 267204	n:880000
KS ci ratio: 1.861978e-01	ci left: 4.565435e-04	ci right 5.513402e-04	k: 442	n:880000
HIST2H2BE   880000 perm   450 sec   (1954 perm/sec)   p_kst 5.022727e-04   p_cons 3.036409e-01   p_joint 5.022727e-04

Joint ci ratio: 1.849495e-01	ci left: 4.578422e-04	ci right 5.521998e-04	k: 448	n:890000
Cons ci ratio: 6.293171e-03	ci left: 3.026437e-01	ci right 3.045554e-01	k: 270203	n:890000
KS ci ratio: 1.849495e-01	ci left: 4.578422e-04	ci right 5.521998e-04	k: 448	n:890000
HIST2H2BE   890000 perm   459 sec   (1940 perm/sec)   p_kst 5.033708e-04   p_cons 3.035989e-01   p_joint 5.033708e-04

Joint ci ratio: 1.839282e-01	ci left: 4.580541e-04	ci right 5.518760e-04	k: 453	n:900000
Cons ci ratio: 6.258720e-03	ci left: 3.026079e-01	ci right 3.045089e-01	k: 273202	n:900000
KS ci ratio: 1.839282e-01	ci left: 4.580541e-04	ci right 5.518760e-04	k: 453	n:900000
HIST2H2BE   900000 perm   467 sec   (1926 perm/sec)   p_kst 5.033333e-04   p_cons 3.035578e-01   p_joint 5.033333e-04

Joint ci ratio: 1.823285e-01	ci left: 4.614089e-04	ci right 5.550051e-04	k: 461	n:910000
Cons ci ratio: 6.225475e-03	ci left: 3.025291e-01	ci right 3.044194e-01	k: 276161	n:910000
KS ci ratio: 1.823285e-01	ci left: 4.614089e-04	ci right 5.550051e-04	k: 461	n:910000
HIST2H2BE   910000 perm   476 sec   (1912 perm/sec)   p_kst 5.065934e-04   p_cons 3.034736e-01   p_joint 5.065934e-04

Joint ci ratio: 1.819354e-01	ci left: 4.584683e-04	ci right 5.512454e-04	k: 463	n:920000
Cons ci ratio: 6.191497e-03	ci left: 3.025378e-01	ci right 3.044178e-01	k: 279199	n:920000
KS ci ratio: 1.819354e-01	ci left: 4.584683e-04	ci right 5.512454e-04	k: 463	n:920000
HIST2H2BE   920000 perm   485 sec   (1898 perm/sec)   p_kst 5.032609e-04   p_cons 3.034772e-01   p_joint 5.032609e-04

Joint ci ratio: 1.813503e-01	ci left: 4.566176e-04	ci right 5.486904e-04	k: 466	n:930000
Cons ci ratio: 6.158931e-03	ci left: 3.024872e-01	ci right 3.043570e-01	k: 282182	n:930000
KS ci ratio: 1.813503e-01	ci left: 4.566176e-04	ci right 5.486904e-04	k: 466	n:930000
HIST2H2BE   930000 perm   498 sec   (1869 perm/sec)   p_kst 5.010753e-04   p_cons 3.034215e-01   p_joint 5.010753e-04

Joint ci ratio: 1.800061e-01	ci left: 4.588700e-04	ci right 5.506365e-04	k: 473	n:940000
Cons ci ratio: 6.125655e-03	ci left: 3.025217e-01	ci right 3.043816e-01	k: 285244	n:940000
KS ci ratio: 1.800061e-01	ci left: 4.588700e-04	ci right 5.506365e-04	k: 473	n:940000
HIST2H2BE   940000 perm   508 sec   (1850 perm/sec)   p_kst 5.031915e-04   p_cons 3.034511e-01   p_joint 5.031915e-04

Joint ci ratio: 1.788774e-01	ci left: 4.600720e-04	ci right 5.514394e-04	k: 479	n:950000
Cons ci ratio: 6.093246e-03	ci left: 3.025324e-01	ci right 3.043825e-01	k: 288284	n:950000
KS ci ratio: 1.788774e-01	ci left: 4.600720e-04	ci right 5.514394e-04	k: 479	n:950000
HIST2H2BE   950000 perm   517 sec   (1837 perm/sec)   p_kst 5.042105e-04   p_cons 3.034568e-01   p_joint 5.042105e-04

Joint ci ratio: 1.777697e-01	ci left: 4.612506e-04	ci right 5.522239e-04	k: 485	n:960000
Cons ci ratio: 6.061406e-03	ci left: 3.025387e-01	ci right 3.043791e-01	k: 291320	n:960000
KS ci ratio: 1.777697e-01	ci left: 4.612506e-04	ci right 5.522239e-04	k: 485	n:960000
HIST2H2BE   960000 perm   526 sec   (1824 perm/sec)   p_kst 5.052083e-04   p_cons 3.034583e-01   p_joint 5.052083e-04

Joint ci ratio: 1.765030e-01	ci left: 4.633920e-04	ci right 5.540669e-04	k: 492	n:970000
Cons ci ratio: 6.031413e-03	ci left: 3.024502e-01	ci right 3.042809e-01	k: 294264	n:970000
KS ci ratio: 1.765030e-01	ci left: 4.633920e-04	ci right 5.540669e-04	k: 492	n:970000
HIST2H2BE   970000 perm   535 sec   (1812 perm/sec)   p_kst 5.072165e-04   p_cons 3.033649e-01   p_joint 5.072165e-04

Joint ci ratio: 1.757913e-01	ci left: 4.625652e-04	ci right 5.526746e-04	k: 496	n:980000
Cons ci ratio: 6.000499e-03	ci left: 3.024593e-01	ci right 3.042806e-01	k: 297302	n:980000
KS ci ratio: 1.757913e-01	ci left: 4.625652e-04	ci right 5.526746e-04	k: 496	n:980000
HIST2H2BE   980000 perm   545 sec   (1800 perm/sec)   p_kst 5.061224e-04   p_cons 3.033694e-01   p_joint 5.061224e-04

Joint ci ratio: 1.745661e-01	ci left: 4.646536e-04	ci right 5.544724e-04	k: 503	n:990000
Cons ci ratio: 5.969927e-03	ci left: 3.024773e-01	ci right 3.042895e-01	k: 300349	n:990000
KS ci ratio: 1.745661e-01	ci left: 4.646536e-04	ci right 5.544724e-04	k: 503	n:990000
HIST2H2BE   990000 perm   554 sec   (1787 perm/sec)   p_kst 5.080808e-04   p_cons 3.033828e-01   p_joint 5.080808e-04

Joint ci ratio: 1.738776e-01	ci left: 4.638326e-04	ci right 5.531020e-04	k: 507	n:1000000
Cons ci ratio: 5.940000e-03	ci left: 3.024820e-01	ci right 3.042851e-01	k: 303383	n:1000000
KS ci ratio: 1.738776e-01	ci left: 4.638326e-04	ci right 5.531020e-04	k: 507	n:1000000
HIST2H2BE   1000000 perm   564 sec   (1774 perm/sec)   p_kst 5.070000e-04   p_cons 3.033830e-01   p_joint 5.070000e-04

Joint ci ratio: 1.733666e-01	ci left: 4.620814e-04	ci right 5.507250e-04	k: 510	n:1010000
Cons ci ratio: 5.910158e-03	ci left: 3.025124e-01	ci right 3.043066e-01	k: 306443	n:1010000
KS ci ratio: 1.733666e-01	ci left: 4.620814e-04	ci right 5.507250e-04	k: 510	n:1010000
HIST2H2BE   1010000 perm   573 sec   (1762 perm/sec)   p_kst 5.049505e-04   p_cons 3.034089e-01   p_joint 5.049505e-04

Joint ci ratio: 1.720250e-01	ci left: 4.650554e-04	ci right 5.535075e-04	k: 518	n:1020000
Cons ci ratio: 5.881963e-03	ci left: 3.024560e-01	ci right 3.042412e-01	k: 309415	n:1020000
KS ci ratio: 1.720250e-01	ci left: 4.650554e-04	ci right 5.535075e-04	k: 518	n:1020000
HIST2H2BE   1020000 perm   583 sec   (1751 perm/sec)   p_kst 5.078431e-04   p_cons 3.033480e-01   p_joint 5.078431e-04

Joint ci ratio: 1.713660e-01	ci left: 4.642569e-04	ci right 5.521839e-04	k: 522	n:1030000
Cons ci ratio: 5.853965e-03	ci left: 3.024152e-01	ci right 3.041917e-01	k: 312402	n:1030000
KS ci ratio: 1.713660e-01	ci left: 4.642569e-04	ci right 5.521839e-04	k: 522	n:1030000
HIST2H2BE   1030000 perm   592 sec   (1739 perm/sec)   p_kst 5.067961e-04   p_cons 3.033029e-01   p_joint 5.067961e-04

Joint ci ratio: 1.702304e-01	ci left: 4.662359e-04	ci right 5.538926e-04	k: 529	n:1040000
Cons ci ratio: 5.826178e-03	ci left: 3.023887e-01	ci right 3.041566e-01	k: 315403	n:1040000
KS ci ratio: 1.702304e-01	ci left: 4.662359e-04	ci right 5.538926e-04	k: 529	n:1040000
HIST2H2BE   1040000 perm   602 sec   (1728 perm/sec)   p_kst 5.086538e-04   p_cons 3.032721e-01   p_joint 5.086538e-04

Joint ci ratio: 1.695918e-01	ci left: 4.654431e-04	ci right 5.525888e-04	k: 533	n:1050000
Cons ci ratio: 5.797659e-03	ci left: 3.024446e-01	ci right 3.042041e-01	k: 318490	n:1050000
KS ci ratio: 1.695918e-01	ci left: 4.654431e-04	ci right 5.525888e-04	k: 533	n:1050000
HIST2H2BE   1050000 perm   612 sec   (1717 perm/sec)   p_kst 5.076190e-04   p_cons 3.033238e-01   p_joint 5.076190e-04

Joint ci ratio: 1.686469e-01	ci left: 4.664730e-04	ci right 5.532754e-04	k: 539	n:1060000
Cons ci ratio: 5.769786e-03	ci left: 3.024825e-01	ci right 3.042337e-01	k: 321559	n:1060000
KS ci ratio: 1.686469e-01	ci left: 4.664730e-04	ci right 5.532754e-04	k: 539	n:1060000
HIST2H2BE   1060000 perm   622 sec   (1705 perm/sec)   p_kst 5.084906e-04   p_cons 3.033575e-01   p_joint 5.084906e-04

Joint ci ratio: 1.680258e-01	ci left: 4.656942e-04	ci right 5.520003e-04	k: 543	n:1070000
Cons ci ratio: 5.742502e-03	ci left: 3.025056e-01	ci right 3.042487e-01	k: 324613	n:1070000
KS ci ratio: 1.680258e-01	ci left: 4.656942e-04	ci right 5.520003e-04	k: 543	n:1070000
HIST2H2BE   1070000 perm   631 sec   (1695 perm/sec)   p_kst 5.074766e-04   p_cons 3.033766e-01   p_joint 5.074766e-04

Joint ci ratio: 1.671067e-01	ci left: 4.667048e-04	ci right 5.526775e-04	k: 549	n:1080000
Cons ci ratio: 5.715388e-03	ci left: 3.025441e-01	ci right 3.042791e-01	k: 327684	n:1080000
KS ci ratio: 1.671067e-01	ci left: 4.667048e-04	ci right 5.526775e-04	k: 549	n:1080000
HIST2H2BE   1080000 perm   641 sec   (1685 perm/sec)   p_kst 5.083333e-04   p_cons 3.034111e-01   p_joint 5.083333e-04

Joint ci ratio: 1.665024e-01	ci left: 4.659396e-04	ci right 5.514299e-04	k: 553	n:1090000
Cons ci ratio: 5.689347e-03	ci left: 3.025306e-01	ci right 3.042576e-01	k: 330699	n:1090000
KS ci ratio: 1.665024e-01	ci left: 4.659396e-04	ci right 5.514299e-04	k: 553	n:1090000
HIST2H2BE   1090000 perm   651 sec   (1675 perm/sec)   p_kst 5.073394e-04   p_cons 3.033936e-01   p_joint 5.073394e-04

Joint ci ratio: 1.657561e-01	ci left: 4.660603e-04	ci right 5.511511e-04	k: 558	n:1100000
Cons ci ratio: 5.663244e-03	ci left: 3.025482e-01	ci right 3.042674e-01	k: 333748	n:1100000
KS ci ratio: 1.657561e-01	ci left: 4.660603e-04	ci right 5.511511e-04	k: 558	n:1100000
HIST2H2BE   1100000 perm   661 sec   (1665 perm/sec)   p_kst 5.072727e-04   p_cons 3.034073e-01   p_joint 5.072727e-04

Joint ci ratio: 1.648736e-01	ci left: 4.670434e-04	ci right 5.518146e-04	k: 564	n:1110000
Cons ci ratio: 5.638181e-03	ci left: 3.025142e-01	ci right 3.042255e-01	k: 336740	n:1110000
KS ci ratio: 1.648736e-01	ci left: 4.670434e-04	ci right 5.518146e-04	k: 564	n:1110000
HIST2H2BE   1110000 perm   671 sec   (1655 perm/sec)   p_kst 5.081081e-04   p_cons 3.033694e-01   p_joint 5.081081e-04

Joint ci ratio: 1.641489e-01	ci left: 4.671538e-04	ci right 5.515356e-04	k: 569	n:1120000
Cons ci ratio: 5.612477e-03	ci left: 3.025540e-01	ci right 3.042577e-01	k: 339814	n:1120000
KS ci ratio: 1.641489e-01	ci left: 4.671538e-04	ci right 5.515356e-04	k: 569	n:1120000
HIST2H2BE   1120000 perm   681 sec   (1645 perm/sec)   p_kst 5.080357e-04   p_cons 3.034054e-01   p_joint 5.080357e-04

Joint ci ratio: 1.632916e-01	ci left: 4.681119e-04	ci right 5.521818e-04	k: 575	n:1130000
Cons ci ratio: 5.587740e-03	ci left: 3.025462e-01	ci right 3.042424e-01	k: 342835	n:1130000
KS ci ratio: 1.632916e-01	ci left: 4.681119e-04	ci right 5.521818e-04	k: 575	n:1130000
HIST2H2BE   1130000 perm   691 sec   (1635 perm/sec)   p_kst 5.088496e-04   p_cons 3.033938e-01   p_joint 5.088496e-04

Joint ci ratio: 1.625875e-01	ci left: 4.682128e-04	ci right 5.519028e-04	k: 580	n:1140000
Cons ci ratio: 5.562878e-03	ci left: 3.025728e-01	ci right 3.042615e-01	k: 345895	n:1140000
KS ci ratio: 1.625875e-01	ci left: 4.682128e-04	ci right 5.519028e-04	k: 580	n:1140000
HIST2H2BE   1140000 perm   702 sec   (1625 perm/sec)   p_kst 5.087719e-04   p_cons 3.034167e-01   p_joint 5.087719e-04

Joint ci ratio: 1.616167e-01	ci left: 4.699814e-04	ci right 5.534373e-04	k: 587	n:1150000
Cons ci ratio: 5.539359e-03	ci left: 3.025216e-01	ci right 3.042029e-01	k: 348866	n:1150000
KS ci ratio: 1.616167e-01	ci left: 4.699814e-04	ci right 5.534373e-04	k: 587	n:1150000
HIST2H2BE   1150000 perm   712 sec   (1615 perm/sec)   p_kst 5.104348e-04   p_cons 3.033617e-01   p_joint 5.104348e-04

Joint ci ratio: 1.610698e-01	ci left: 4.692389e-04	ci right 5.522537e-04	k: 591	n:1160000
Cons ci ratio: 5.515213e-03	ci left: 3.025419e-01	ci right 3.042160e-01	k: 351919	n:1160000
KS ci ratio: 1.610698e-01	ci left: 4.692389e-04	ci right 5.522537e-04	k: 591	n:1160000
HIST2H2BE   1160000 perm   722 sec   (1606 perm/sec)   p_kst 5.094828e-04   p_cons 3.033784e-01   p_joint 5.094828e-04

Joint ci ratio: 1.605285e-01	ci left: 4.685095e-04	ci right 5.510898e-04	k: 595	n:1170000
Cons ci ratio: 5.491390e-03	ci left: 3.025611e-01	ci right 3.042279e-01	k: 354971	n:1170000
KS ci ratio: 1.605285e-01	ci left: 4.685095e-04	ci right 5.510898e-04	k: 595	n:1170000
HIST2H2BE   1170000 perm   733 sec   (1596 perm/sec)   p_kst 5.085470e-04   p_cons 3.033940e-01   p_joint 5.085470e-04

Joint ci ratio: 1.597264e-01	ci left: 4.694201e-04	ci right 5.517079e-04	k: 601	n:1180000
Cons ci ratio: 5.467250e-03	ci left: 3.026282e-01	ci right 3.042881e-01	k: 358080	n:1180000
KS ci ratio: 1.597264e-01	ci left: 4.694201e-04	ci right 5.517079e-04	k: 601	n:1180000
HIST2H2BE   1180000 perm   744 sec   (1587 perm/sec)   p_kst 5.093220e-04   p_cons 3.034576e-01   p_joint 5.093220e-04

Joint ci ratio: 1.590672e-01	ci left: 4.695095e-04	ci right 5.514408e-04	k: 606	n:1190000
Cons ci ratio: 5.444333e-03	ci left: 3.026236e-01	ci right 3.042765e-01	k: 361105	n:1190000
KS ci ratio: 1.590672e-01	ci left: 4.695095e-04	ci right 5.514408e-04	k: 606	n:1190000
HIST2H2BE   1190000 perm   754 sec   (1578 perm/sec)   p_kst 5.092437e-04   p_cons 3.034496e-01   p_joint 5.092437e-04

Joint ci ratio: 1.584161e-01	ci left: 4.695981e-04	ci right 5.511775e-04	k: 611	n:1200000
Cons ci ratio: 5.422301e-03	ci left: 3.025725e-01	ci right 3.042184e-01	k: 364074	n:1200000
KS ci ratio: 1.584161e-01	ci left: 4.695981e-04	ci right 5.511775e-04	k: 611	n:1200000
HIST2H2BE   1200000 perm   765 sec   (1568 perm/sec)   p_kst 5.091667e-04   p_cons 3.033950e-01   p_joint 5.091667e-04

Joint ci ratio: 1.579010e-01	ci left: 4.688921e-04	ci right 5.500589e-04	k: 615	n:1210000
Cons ci ratio: 5.399278e-03	ci left: 3.026206e-01	ci right 3.042597e-01	k: 367162	n:1210000
KS ci ratio: 1.579010e-01	ci left: 4.688921e-04	ci right 5.500589e-04	k: 615	n:1210000
HIST2H2BE   1210000 perm   776 sec   (1558 perm/sec)   p_kst 5.082645e-04   p_cons 3.034397e-01   p_joint 5.082645e-04

Joint ci ratio: 1.572641e-01	ci left: 4.689854e-04	ci right 5.498100e-04	k: 620	n:1220000
Cons ci ratio: 5.377234e-03	ci left: 3.026138e-01	ci right 3.042462e-01	k: 370184	n:1220000
KS ci ratio: 1.572641e-01	ci left: 4.689854e-04	ci right 5.498100e-04	k: 620	n:1220000
HIST2H2BE   1220000 perm   787 sec   (1549 perm/sec)   p_kst 5.081967e-04   p_cons 3.034295e-01   p_joint 5.081967e-04

Joint ci ratio: 1.562606e-01	ci left: 4.714215e-04	ci right 5.520990e-04	k: 628	n:1230000
Cons ci ratio: 5.355282e-03	ci left: 3.026209e-01	ci right 3.042467e-01	k: 373223	n:1230000
KS ci ratio: 1.562606e-01	ci left: 4.714215e-04	ci right 5.520990e-04	k: 628	n:1230000
HIST2H2BE   1230000 perm   798 sec   (1541 perm/sec)   p_kst 5.105691e-04   p_cons 3.034333e-01   p_joint 5.105691e-04

Joint ci ratio: 1.557662e-01	ci left: 4.707196e-04	ci right 5.509982e-04	k: 632	n:1240000
Cons ci ratio: 5.333953e-03	ci left: 3.025998e-01	ci right 3.042189e-01	k: 376227	n:1240000
KS ci ratio: 1.557662e-01	ci left: 4.707196e-04	ci right 5.509982e-04	k: 632	n:1240000
HIST2H2BE   1240000 perm   809 sec   (1532 perm/sec)   p_kst 5.096774e-04   p_cons 3.034089e-01   p_joint 5.096774e-04

Joint ci ratio: 1.555209e-01	ci left: 4.684915e-04	ci right 5.482526e-04	k: 634	n:1250000
Cons ci ratio: 5.313481e-03	ci left: 3.025310e-01	ci right 3.041435e-01	k: 379171	n:1250000
KS ci ratio: 1.555209e-01	ci left: 4.684915e-04	ci right 5.482526e-04	k: 634	n:1250000
HIST2H2BE   1250000 perm   821 sec   (1523 perm/sec)   p_kst 5.072000e-04   p_cons 3.033368e-01   p_joint 5.072000e-04

Joint ci ratio: 1.547912e-01	ci left: 4.693503e-04	ci right 5.488480e-04	k: 640	n:1260000
Cons ci ratio: 5.292138e-03	ci left: 3.025513e-01	ci right 3.041575e-01	k: 382226	n:1260000
KS ci ratio: 1.547912e-01	ci left: 4.693503e-04	ci right 5.488480e-04	k: 640	n:1260000
HIST2H2BE   1260000 perm   832 sec   (1514 perm/sec)   p_kst 5.079365e-04   p_cons 3.033540e-01   p_joint 5.079365e-04

Joint ci ratio: 1.543106e-01	ci left: 4.686824e-04	ci right 5.477977e-04	k: 644	n:1270000
Cons ci ratio: 5.271238e-03	ci left: 3.025564e-01	ci right 3.041563e-01	k: 385262	n:1270000
KS ci ratio: 1.543106e-01	ci left: 4.686824e-04	ci right 5.477977e-04	k: 644	n:1270000
HIST2H2BE   1270000 perm   843 sec   (1506 perm/sec)   p_kst 5.070866e-04   p_cons 3.033559e-01   p_joint 5.070866e-04

Joint ci ratio: 1.540721e-01	ci left: 4.665230e-04	ci right 5.451408e-04	k: 646	n:1280000
Cons ci ratio: 5.250079e-03	ci left: 3.026021e-01	ci right 3.041957e-01	k: 388350	n:1280000
KS ci ratio: 1.540721e-01	ci left: 4.665230e-04	ci right 5.451408e-04	k: 646	n:1280000
HIST2H2BE   1280000 perm   855 sec   (1497 perm/sec)   p_kst 5.046875e-04   p_cons 3.033984e-01   p_joint 5.046875e-04

Joint ci ratio: 1.535981e-01	ci left: 4.658880e-04	ci right 5.441349e-04	k: 650	n:1290000
Cons ci ratio: 5.229671e-03	ci left: 3.026067e-01	ci right 3.041942e-01	k: 391386	n:1290000
KS ci ratio: 1.535981e-01	ci left: 4.658880e-04	ci right 5.441349e-04	k: 650	n:1290000
HIST2H2BE   1290000 perm   866 sec   (1489 perm/sec)   p_kst 5.038760e-04   p_cons 3.034000e-01   p_joint 5.038760e-04

Joint ci ratio: 1.532455e-01	ci left: 4.645233e-04	ci right 5.423455e-04	k: 653	n:1300000
Cons ci ratio: 5.209224e-03	ci left: 3.026336e-01	ci right 3.042150e-01	k: 394451	n:1300000
KS ci ratio: 1.532455e-01	ci left: 4.645233e-04	ci right 5.423455e-04	k: 653	n:1300000
HIST2H2BE   1300000 perm   878 sec   (1480 perm/sec)   p_kst 5.023077e-04   p_cons 3.034238e-01   p_joint 5.023077e-04

Joint ci ratio: 1.527791e-01	ci left: 4.639138e-04	ci right 5.413758e-04	k: 657	n:1310000
Cons ci ratio: 5.189587e-03	ci left: 3.026136e-01	ci right 3.041888e-01	k: 397455	n:1310000
KS ci ratio: 1.527791e-01	ci left: 4.639138e-04	ci right 5.413758e-04	k: 657	n:1310000
HIST2H2BE   1310000 perm   890 sec   (1471 perm/sec)   p_kst 5.015267e-04   p_cons 3.034008e-01   p_joint 5.015267e-04

Joint ci ratio: 1.525476e-01	ci left: 4.618566e-04	ci right 5.388475e-04	k: 659	n:1320000
Cons ci ratio: 5.169142e-03	ci left: 3.026779e-01	ci right 3.042472e-01	k: 400570	n:1320000
KS ci ratio: 1.525476e-01	ci left: 4.618566e-04	ci right 5.388475e-04	k: 659	n:1320000
HIST2H2BE   1320000 perm   902 sec   (1463 perm/sec)   p_kst 4.992424e-04   p_cons 3.034621e-01   p_joint 4.992424e-04

Joint ci ratio: 1.518588e-01	ci left: 4.627235e-04	ci right 5.394789e-04	k: 665	n:1330000
Cons ci ratio: 5.150063e-03	ci left: 3.026488e-01	ci right 3.042122e-01	k: 403562	n:1330000
KS ci ratio: 1.518588e-01	ci left: 4.627235e-04	ci right 5.394789e-04	k: 665	n:1330000
HIST2H2BE   1330000 perm   914 sec   (1456 perm/sec)   p_kst 5.000000e-04   p_cons 3.034301e-01   p_joint 5.000000e-04

Joint ci ratio: 1.512920e-01	ci left: 4.628601e-04	ci right 5.393257e-04	k: 670	n:1340000
Cons ci ratio: 5.131257e-03	ci left: 3.026150e-01	ci right 3.041725e-01	k: 406547	n:1340000
KS ci ratio: 1.512920e-01	ci left: 4.628601e-04	ci right 5.393257e-04	k: 670	n:1340000
HIST2H2BE   1340000 perm   926 sec   (1448 perm/sec)   p_kst 5.000000e-04   p_cons 3.033933e-01   p_joint 5.000000e-04

Joint ci ratio: 1.508431e-01	ci left: 4.622825e-04	ci right 5.384056e-04	k: 674	n:1350000
Cons ci ratio: 5.111768e-03	ci left: 3.026549e-01	ci right 3.042067e-01	k: 409631	n:1350000
KS ci ratio: 1.508431e-01	ci left: 4.622825e-04	ci right 5.384056e-04	k: 674	n:1350000
HIST2H2BE   1350000 perm   937 sec   (1440 perm/sec)   p_kst 4.992593e-04   p_cons 3.034304e-01   p_joint 4.992593e-04

Joint ci ratio: 1.503982e-01	ci left: 4.617137e-04	ci right 5.374987e-04	k: 678	n:1360000
Cons ci ratio: 5.092084e-03	ci left: 3.027288e-01	ci right 3.042750e-01	k: 412762	n:1360000
KS ci ratio: 1.503982e-01	ci left: 4.617137e-04	ci right 5.374987e-04	k: 678	n:1360000
HIST2H2BE   1360000 perm   950 sec   (1432 perm/sec)   p_kst 4.985294e-04   p_cons 3.035015e-01   p_joint 4.985294e-04

Joint ci ratio: 1.498475e-01	ci left: 4.618560e-04	ci right 5.373620e-04	k: 683	n:1370000
Cons ci ratio: 5.073080e-03	ci left: 3.027637e-01	ci right 3.043043e-01	k: 415841	n:1370000
KS ci ratio: 1.498475e-01	ci left: 4.618560e-04	ci right 5.373620e-04	k: 683	n:1370000
HIST2H2BE   1370000 perm   962 sec   (1424 perm/sec)   p_kst 4.985401e-04   p_cons 3.035336e-01   p_joint 4.985401e-04

Joint ci ratio: 1.495200e-01	ci left: 4.606017e-04	ci right 5.357233e-04	k: 686	n:1380000
Cons ci ratio: 5.054851e-03	ci left: 3.027511e-01	ci right 3.042860e-01	k: 418855	n:1380000
KS ci ratio: 1.495200e-01	ci left: 4.606017e-04	ci right 5.357233e-04	k: 686	n:1380000
HIST2H2BE   1380000 perm   975 sec   (1416 perm/sec)   p_kst 4.971014e-04   p_cons 3.035181e-01   p_joint 4.971014e-04

Joint ci ratio: 1.491948e-01	ci left: 4.593656e-04	ci right 5.341081e-04	k: 689	n:1390000
Cons ci ratio: 5.036911e-03	ci left: 3.027307e-01	ci right 3.042601e-01	k: 421858	n:1390000
KS ci ratio: 1.491948e-01	ci left: 4.593656e-04	ci right 5.341081e-04	k: 689	n:1390000
HIST2H2BE   1390000 perm   987 sec   (1409 perm/sec)   p_kst 4.956835e-04   p_cons 3.034950e-01   p_joint 4.956835e-04

Joint ci ratio: 1.484436e-01	ci left: 4.608983e-04	ci right 5.354791e-04	k: 696	n:1400000
Cons ci ratio: 5.018856e-03	ci left: 3.027363e-01	ci right 3.042602e-01	k: 424897	n:1400000
KS ci ratio: 1.484436e-01	ci left: 4.608983e-04	ci right 5.354791e-04	k: 696	n:1400000
HIST2H2BE   1400000 perm   1001 sec   (1399 perm/sec)   p_kst 4.971429e-04   p_cons 3.034979e-01   p_joint 4.971429e-04

Joint ci ratio: 1.478087e-01	ci left: 4.617272e-04	ci right 5.360943e-04	k: 702	n:1410000
Cons ci ratio: 5.001144e-03	ci left: 3.027291e-01	ci right 3.042476e-01	k: 427918	n:1410000
KS ci ratio: 1.478087e-01	ci left: 4.617272e-04	ci right 5.360943e-04	k: 702	n:1410000
HIST2H2BE   1410000 perm   1014 sec   (1391 perm/sec)   p_kst 4.978723e-04   p_cons 3.034879e-01   p_joint 4.978723e-04

Joint ci ratio: 1.473900e-01	ci left: 4.611884e-04	ci right 5.352398e-04	k: 706	n:1420000
Cons ci ratio: 4.983179e-03	ci left: 3.027593e-01	ci right 3.042725e-01	k: 430992	n:1420000
KS ci ratio: 1.473900e-01	ci left: 4.611884e-04	ci right 5.352398e-04	k: 706	n:1420000
HIST2H2BE   1420000 perm   1027 sec   (1383 perm/sec)   p_kst 4.971831e-04   p_cons 3.035155e-01   p_joint 4.971831e-04

Joint ci ratio: 1.467685e-01	ci left: 4.620047e-04	ci right 5.358470e-04	k: 712	n:1430000
Cons ci ratio: 4.965832e-03	ci left: 3.027528e-01	ci right 3.042606e-01	k: 434014	n:1430000
KS ci ratio: 1.467685e-01	ci left: 4.620047e-04	ci right 5.358470e-04	k: 712	n:1430000
HIST2H2BE   1430000 perm   1041 sec   (1374 perm/sec)   p_kst 4.979021e-04   p_cons 3.035063e-01   p_joint 4.979021e-04

Joint ci ratio: 1.464608e-01	ci left: 4.608033e-04	ci right 5.342855e-04	k: 715	n:1440000
Cons ci ratio: 4.949097e-03	ci left: 3.027096e-01	ci right 3.042121e-01	k: 436983	n:1440000
KS ci ratio: 1.464608e-01	ci left: 4.608033e-04	ci right 5.342855e-04	k: 715	n:1440000
HIST2H2BE   1440000 perm   1054 sec   (1367 perm/sec)   p_kst 4.965278e-04   p_cons 3.034604e-01   p_joint 4.965278e-04

Joint ci ratio: 1.459521e-01	ci left: 4.609474e-04	ci right 5.341751e-04	k: 720	n:1450000
Cons ci ratio: 4.931934e-03	ci left: 3.027179e-01	ci right 3.042153e-01	k: 440026	n:1450000
KS ci ratio: 1.459521e-01	ci left: 4.609474e-04	ci right 5.341751e-04	k: 720	n:1450000
HIST2H2BE   1450000 perm   1067 sec   (1360 perm/sec)   p_kst 4.965517e-04   p_cons 3.034662e-01   p_joint 4.965517e-04

Joint ci ratio: 1.457502e-01	ci left: 4.591101e-04	ci right 5.319363e-04	k: 722	n:1460000
Cons ci ratio: 4.915100e-03	ci left: 3.027132e-01	ci right 3.042054e-01	k: 443050	n:1460000
KS ci ratio: 1.457502e-01	ci left: 4.591101e-04	ci right 5.319363e-04	k: 722	n:1460000
HIST2H2BE   1460000 perm   1079 sec   (1353 perm/sec)   p_kst 4.945205e-04   p_cons 3.034589e-01   p_joint 4.945205e-04

Joint ci ratio: 1.451491e-01	ci left: 4.599200e-04	ci right 5.325477e-04	k: 728	n:1470000
Cons ci ratio: 4.898114e-03	ci left: 3.027364e-01	ci right 3.042235e-01	k: 446115	n:1470000
KS ci ratio: 1.451491e-01	ci left: 4.599200e-04	ci right 5.325477e-04	k: 728	n:1470000
HIST2H2BE   1470000 perm   1092 sec   (1346 perm/sec)   p_kst 4.952381e-04   p_cons 3.034796e-01   p_joint 4.952381e-04

Joint ci ratio: 1.450499e-01	ci left: 4.574636e-04	ci right 5.296496e-04	k: 729	n:1480000
Cons ci ratio: 4.881833e-03	ci left: 3.027134e-01	ci right 3.041955e-01	k: 449112	n:1480000
KS ci ratio: 1.450499e-01	ci left: 4.574636e-04	ci right 5.296496e-04	k: 729	n:1480000
HIST2H2BE   1480000 perm   1105 sec   (1339 perm/sec)   p_kst 4.925676e-04   p_cons 3.034541e-01   p_joint 4.925676e-04

Joint ci ratio: 1.445557e-01	ci left: 4.576275e-04	ci right 5.295721e-04	k: 734	n:1490000
Cons ci ratio: 4.865528e-03	ci left: 3.027068e-01	ci right 3.041839e-01	k: 452133	n:1490000
KS ci ratio: 1.445557e-01	ci left: 4.576275e-04	ci right 5.295721e-04	k: 734	n:1490000
HIST2H2BE   1490000 perm   1118 sec   (1332 perm/sec)   p_kst 4.926174e-04   p_cons 3.034450e-01   p_joint 4.926174e-04

Joint ci ratio: 1.442616e-01	ci left: 4.565043e-04	ci right 5.281139e-04	k: 737	n:1500000
Cons ci ratio: 4.849209e-03	ci left: 3.027156e-01	ci right 3.041878e-01	k: 455177	n:1500000
KS ci ratio: 1.442616e-01	ci left: 4.565043e-04	ci right 5.281139e-04	k: 737	n:1500000
HIST2H2BE   1500000 perm   1131 sec   (1326 perm/sec)   p_kst 4.913333e-04   p_cons 3.034513e-01   p_joint 4.913333e-04

Joint ci ratio: 1.436787e-01	ci left: 4.573115e-04	ci right 5.287330e-04	k: 743	n:1510000
Cons ci ratio: 4.832910e-03	ci left: 3.027369e-01	ci right 3.042042e-01	k: 458240	n:1510000
KS ci ratio: 1.436787e-01	ci left: 4.573115e-04	ci right 5.287330e-04	k: 743	n:1510000
HIST2H2BE   1510000 perm   1145 sec   (1319 perm/sec)   p_kst 4.920530e-04   p_cons 3.034702e-01   p_joint 4.920530e-04

Joint ci ratio: 1.427225e-01	ci left: 4.606462e-04	ci right 5.320689e-04	k: 753	n:1520000
Cons ci ratio: 4.817816e-03	ci left: 3.026666e-01	ci right 3.041289e-01	k: 461164	n:1520000
KS ci ratio: 1.427225e-01	ci left: 4.606462e-04	ci right 5.320689e-04	k: 753	n:1520000
HIST2H2BE   1520000 perm   1158 sec   (1313 perm/sec)   p_kst 4.953947e-04   p_cons 3.033974e-01   p_joint 4.953947e-04

Joint ci ratio: 1.424395e-01	ci left: 4.595262e-04	ci right 5.306220e-04	k: 756	n:1530000
Cons ci ratio: 4.801875e-03	ci left: 3.026840e-01	ci right 3.041416e-01	k: 464221	n:1530000
KS ci ratio: 1.424395e-01	ci left: 4.595262e-04	ci right 5.306220e-04	k: 756	n:1530000
HIST2H2BE   1530000 perm   1171 sec   (1307 perm/sec)   p_kst 4.941176e-04   p_cons 3.034124e-01   p_joint 4.941176e-04

Joint ci ratio: 1.419714e-01	ci left: 4.596735e-04	ci right 5.305386e-04	k: 761	n:1540000
Cons ci ratio: 4.786289e-03	ci left: 3.026837e-01	ci right 3.041365e-01	k: 467251	n:1540000
KS ci ratio: 1.419714e-01	ci left: 4.596735e-04	ci right 5.305386e-04	k: 761	n:1540000
HIST2H2BE   1540000 perm   1185 sec   (1300 perm/sec)   p_kst 4.941558e-04   p_cons 3.034097e-01   p_joint 4.941558e-04

Joint ci ratio: 1.416003e-01	ci left: 4.591970e-04	ci right 5.297879e-04	k: 765	n:1550000
Cons ci ratio: 4.771066e-03	ci left: 3.026647e-01	ci right 3.041128e-01	k: 470252	n:1550000
KS ci ratio: 1.416003e-01	ci left: 4.591970e-04	ci right 5.297879e-04	k: 765	n:1550000
HIST2H2BE   1550000 perm   1198 sec   (1293 perm/sec)   p_kst 4.935484e-04   p_cons 3.033884e-01   p_joint 4.935484e-04

Joint ci ratio: 1.414159e-01	ci left: 4.574901e-04	ci right 5.277193e-04	k: 767	n:1560000
Cons ci ratio: 4.756044e-03	ci left: 3.026408e-01	ci right 3.040843e-01	k: 473245	n:1560000
KS ci ratio: 1.414159e-01	ci left: 4.574901e-04	ci right 5.277193e-04	k: 767	n:1560000
HIST2H2BE   1560000 perm   1212 sec   (1287 perm/sec)   p_kst 4.916667e-04   p_cons 3.033622e-01   p_joint 4.916667e-04

Joint ci ratio: 1.412323e-01	ci left: 4.558049e-04	ci right 5.256770e-04	k: 769	n:1570000
Cons ci ratio: 4.740792e-03	ci left: 3.026504e-01	ci right 3.040892e-01	k: 476290	n:1570000
KS ci ratio: 1.412323e-01	ci left: 4.558049e-04	ci right 5.256770e-04	k: 769	n:1570000
HIST2H2BE   1570000 perm   1226 sec   (1280 perm/sec)   p_kst 4.898089e-04   p_cons 3.033694e-01   p_joint 4.898089e-04

Joint ci ratio: 1.408669e-01	ci left: 4.553624e-04	ci right 5.249708e-04	k: 773	n:1580000
Cons ci ratio: 4.724915e-03	ci left: 3.027287e-01	ci right 3.041631e-01	k: 479444	n:1580000
KS ci ratio: 1.408669e-01	ci left: 4.553624e-04	ci right 5.249708e-04	k: 773	n:1580000
HIST2H2BE   1580000 perm   1240 sec   (1274 perm/sec)   p_kst 4.892405e-04   p_cons 3.034456e-01   p_joint 4.892405e-04

Joint ci ratio: 1.405948e-01	ci left: 4.543188e-04	ci right 5.236223e-04	k: 776	n:1590000
Cons ci ratio: 4.710099e-03	ci left: 3.027251e-01	ci right 3.041549e-01	k: 482469	n:1590000
KS ci ratio: 1.405948e-01	ci left: 4.543188e-04	ci right 5.236223e-04	k: 776	n:1590000
HIST2H2BE   1590000 perm   1254 sec   (1268 perm/sec)   p_kst 4.880503e-04   p_cons 3.034396e-01   p_joint 4.880503e-04

Joint ci ratio: 1.401446e-01	ci left: 4.544946e-04	ci right 5.235844e-04	k: 781	n:1600000
Cons ci ratio: 4.695895e-03	ci left: 3.026790e-01	ci right 3.041043e-01	k: 485426	n:1600000
KS ci ratio: 1.401446e-01	ci left: 4.544946e-04	ci right 5.235844e-04	k: 781	n:1600000
HIST2H2BE   1600000 perm   1267 sec   (1263 perm/sec)   p_kst 4.881250e-04   p_cons 3.033913e-01   p_joint 4.881250e-04

Joint ci ratio: 1.397876e-01	ci left: 4.540691e-04	ci right 5.229037e-04	k: 785	n:1610000
Cons ci ratio: 4.681859e-03	ci left: 3.026297e-01	ci right 3.040505e-01	k: 488377	n:1610000
KS ci ratio: 1.397876e-01	ci left: 4.540691e-04	ci right 5.229037e-04	k: 785	n:1610000
HIST2H2BE   1610000 perm   1281 sec   (1256 perm/sec)   p_kst 4.875776e-04   p_cons 3.033398e-01   p_joint 4.875776e-04

Joint ci ratio: 1.393451e-01	ci left: 4.542449e-04	ci right 5.228700e-04	k: 790	n:1620000
Cons ci ratio: 4.667151e-03	ci left: 3.026533e-01	ci right 3.040697e-01	k: 491445	n:1620000
KS ci ratio: 1.393451e-01	ci left: 4.542449e-04	ci right 5.228700e-04	k: 790	n:1620000
HIST2H2BE   1620000 perm   1295 sec   (1251 perm/sec)   p_kst 4.876543e-04   p_cons 3.033611e-01   p_joint 4.876543e-04

Joint ci ratio: 1.389067e-01	ci left: 4.544188e-04	ci right 5.228364e-04	k: 795	n:1630000
Cons ci ratio: 4.652857e-03	ci left: 3.026514e-01	ci right 3.040634e-01	k: 494472	n:1630000
KS ci ratio: 1.389067e-01	ci left: 4.544188e-04	ci right 5.228364e-04	k: 795	n:1630000
HIST2H2BE   1630000 perm   1309 sec   (1245 perm/sec)   p_kst 4.877301e-04   p_cons 3.033571e-01   p_joint 4.877301e-04

Joint ci ratio: 1.387327e-01	ci left: 4.528251e-04	ci right 5.209103e-04	k: 797	n:1640000
Cons ci ratio: 4.638834e-03	ci left: 3.026367e-01	ci right 3.040445e-01	k: 497478	n:1640000
KS ci ratio: 1.387327e-01	ci left: 4.528251e-04	ci right 5.209103e-04	k: 797	n:1640000
HIST2H2BE   1640000 perm   1324 sec   (1239 perm/sec)   p_kst 4.859756e-04   p_cons 3.033402e-01   p_joint 4.859756e-04

Joint ci ratio: 1.383863e-01	ci left: 4.524209e-04	ci right 5.202615e-04	k: 801	n:1650000
Cons ci ratio: 4.625276e-03	ci left: 3.025914e-01	ci right 3.039948e-01	k: 500433	n:1650000
KS ci ratio: 1.383863e-01	ci left: 4.524209e-04	ci right 5.202615e-04	k: 801	n:1650000
HIST2H2BE   1650000 perm   1338 sec   (1233 perm/sec)   p_kst 4.854545e-04   p_cons 3.032927e-01   p_joint 4.854545e-04

Joint ci ratio: 1.378715e-01	ci left: 4.531850e-04	ci right 5.208667e-04	k: 807	n:1660000
Cons ci ratio: 4.611369e-03	ci left: 3.025893e-01	ci right 3.039885e-01	k: 503459	n:1660000
KS ci ratio: 1.378715e-01	ci left: 4.531850e-04	ci right 5.208667e-04	k: 807	n:1660000
HIST2H2BE   1660000 perm   1353 sec   (1227 perm/sec)   p_kst 4.861446e-04   p_cons 3.032886e-01   p_joint 4.861446e-04

Joint ci ratio: 1.374469e-01	ci left: 4.533622e-04	ci right 5.208448e-04	k: 812	n:1670000
Cons ci ratio: 4.597547e-03	ci left: 3.025909e-01	ci right 3.039858e-01	k: 506491	n:1670000
KS ci ratio: 1.374469e-01	ci left: 4.533622e-04	ci right 5.208448e-04	k: 812	n:1670000
HIST2H2BE   1670000 perm   1367 sec   (1222 perm/sec)   p_kst 4.862275e-04   p_cons 3.032880e-01   p_joint 4.862275e-04

Joint ci ratio: 1.369425e-01	ci left: 4.541125e-04	ci right 5.214384e-04	k: 818	n:1680000
Cons ci ratio: 4.583753e-03	ci left: 3.026014e-01	ci right 3.039922e-01	k: 509538	n:1680000
KS ci ratio: 1.369425e-01	ci left: 4.541125e-04	ci right 5.214384e-04	k: 818	n:1680000
HIST2H2BE   1680000 perm   1381 sec   (1216 perm/sec)   p_kst 4.869048e-04   p_cons 3.032964e-01   p_joint 4.869048e-04

Joint ci ratio: 1.367757e-01	ci left: 4.525683e-04	ci right 5.195769e-04	k: 820	n:1690000
Cons ci ratio: 4.570037e-03	ci left: 3.026159e-01	ci right 3.040026e-01	k: 512592	n:1690000
KS ci ratio: 1.367757e-01	ci left: 4.525683e-04	ci right 5.195769e-04	k: 820	n:1690000
HIST2H2BE   1690000 perm   1396 sec   (1211 perm/sec)   p_kst 4.852071e-04   p_cons 3.033089e-01   p_joint 4.852071e-04

Joint ci ratio: 1.364437e-01	ci left: 4.521787e-04	ci right 5.189539e-04	k: 824	n:1700000
Cons ci ratio: 4.556785e-03	ci left: 3.025985e-01	ci right 3.039810e-01	k: 515592	n:1700000
KS ci ratio: 1.364437e-01	ci left: 4.521787e-04	ci right 5.189539e-04	k: 824	n:1700000
HIST2H2BE   1700000 perm   1411 sec   (1205 perm/sec)   p_kst 4.847059e-04   p_cons 3.032894e-01   p_joint 4.847059e-04

Joint ci ratio: 1.357054e-01	ci left: 4.546184e-04	ci right 5.213613e-04	k: 833	n:1710000
Cons ci ratio: 4.543221e-03	ci left: 3.026210e-01	ci right 3.039996e-01	k: 518660	n:1710000
KS ci ratio: 1.357054e-01	ci left: 4.546184e-04	ci right 5.213613e-04	k: 833	n:1710000
HIST2H2BE   1710000 perm   1426 sec   (1199 perm/sec)   p_kst 4.871345e-04   p_cons 3.033099e-01   p_joint 4.871345e-04

Joint ci ratio: 1.353811e-01	ci left: 4.542220e-04	ci right 5.207345e-04	k: 837	n:1720000
Cons ci ratio: 4.530226e-03	ci left: 3.026014e-01	ci right 3.039760e-01	k: 521656	n:1720000
KS ci ratio: 1.353811e-01	ci left: 4.542220e-04	ci right 5.207345e-04	k: 837	n:1720000
HIST2H2BE   1720000 perm   1440 sec   (1194 perm/sec)   p_kst 4.866279e-04   p_cons 3.032884e-01   p_joint 4.866279e-04

Joint ci ratio: 1.348990e-01	ci left: 4.549474e-04	ci right 5.213099e-04	k: 843	n:1730000
Cons ci ratio: 4.517354e-03	ci left: 3.025810e-01	ci right 3.039515e-01	k: 524650	n:1730000
KS ci ratio: 1.348990e-01	ci left: 4.549474e-04	ci right 5.213099e-04	k: 843	n:1730000
HIST2H2BE   1730000 perm   1456 sec   (1189 perm/sec)   p_kst 4.872832e-04   p_cons 3.032659e-01   p_joint 4.872832e-04

Joint ci ratio: 1.341853e-01	ci left: 4.573311e-04	ci right 5.236602e-04	k: 852	n:1740000
Cons ci ratio: 4.504187e-03	ci left: 3.025986e-01	ci right 3.039652e-01	k: 527710	n:1740000
KS ci ratio: 1.341853e-01	ci left: 4.573311e-04	ci right 5.236602e-04	k: 852	n:1740000
HIST2H2BE   1740000 perm   1471 sec   (1183 perm/sec)   p_kst 4.896552e-04   p_cons 3.032816e-01   p_joint 4.896552e-04

Joint ci ratio: 1.334054e-01	ci left: 4.602409e-04	ci right 5.265732e-04	k: 862	n:1750000
Cons ci ratio: 4.491031e-03	ci left: 3.026258e-01	ci right 3.039885e-01	k: 530787	n:1750000
KS ci ratio: 1.334054e-01	ci left: 4.602409e-04	ci right 5.265732e-04	k: 862	n:1750000
HIST2H2BE   1750000 perm   1485 sec   (1178 perm/sec)   p_kst 4.925714e-04   p_cons 3.033069e-01   p_joint 4.925714e-04

Joint ci ratio: 1.330206e-01	ci left: 4.603721e-04	ci right 5.265169e-04	k: 867	n:1760000
Cons ci ratio: 4.477990e-03	ci left: 3.026527e-01	ci right 3.040116e-01	k: 533864	n:1760000
KS ci ratio: 1.330206e-01	ci left: 4.603721e-04	ci right 5.265169e-04	k: 867	n:1760000
HIST2H2BE   1760000 perm   1501 sec   (1173 perm/sec)   p_kst 4.926136e-04   p_cons 3.033318e-01   p_joint 4.926136e-04

Joint ci ratio: 1.327914e-01	ci left: 4.594097e-04	ci right 5.252934e-04	k: 870	n:1770000
Cons ci ratio: 4.465820e-03	ci left: 3.026076e-01	ci right 3.039625e-01	k: 536814	n:1770000
KS ci ratio: 1.327914e-01	ci left: 4.594097e-04	ci right 5.252934e-04	k: 870	n:1770000
HIST2H2BE   1770000 perm   1516 sec   (1168 perm/sec)   p_kst 4.915254e-04   p_cons 3.032847e-01   p_joint 4.915254e-04

Joint ci ratio: 1.324876e-01	ci left: 4.590013e-04	ci right 5.246641e-04	k: 874	n:1780000
Cons ci ratio: 4.452849e-03	ci left: 3.026483e-01	ci right 3.039995e-01	k: 539916	n:1780000
KS ci ratio: 1.324876e-01	ci left: 4.590013e-04	ci right 5.246641e-04	k: 874	n:1780000
HIST2H2BE   1780000 perm   1531 sec   (1162 perm/sec)   p_kst 4.910112e-04   p_cons 3.033236e-01   p_joint 4.910112e-04

Joint ci ratio: 1.320356e-01	ci left: 4.596781e-04	ci right 5.251958e-04	k: 880	n:1790000
Cons ci ratio: 4.440148e-03	ci left: 3.026735e-01	ci right 3.040210e-01	k: 542991	n:1790000
KS ci ratio: 1.320356e-01	ci left: 4.596781e-04	ci right 5.251958e-04	k: 880	n:1790000
HIST2H2BE   1790000 perm   1547 sec   (1157 perm/sec)   p_kst 4.916201e-04   p_cons 3.033469e-01   p_joint 4.916201e-04

Joint ci ratio: 1.316625e-01	ci left: 4.598105e-04	ci right 5.251474e-04	k: 885	n:1800000
Cons ci ratio: 4.428044e-03	ci left: 3.026518e-01	ci right 3.039955e-01	k: 545982	n:1800000
KS ci ratio: 1.316625e-01	ci left: 4.598105e-04	ci right 5.251474e-04	k: 885	n:1800000
HIST2H2BE   1800000 perm   1563 sec   (1152 perm/sec)   p_kst 4.916667e-04   p_cons 3.033233e-01   p_joint 4.916667e-04

Joint ci ratio: 1.312189e-01	ci left: 4.604761e-04	ci right 5.256699e-04	k: 891	n:1810000
Cons ci ratio: 4.416126e-03	ci left: 3.026221e-01	ci right 3.039620e-01	k: 548958	n:1810000
KS ci ratio: 1.312189e-01	ci left: 4.604761e-04	ci right 5.256699e-04	k: 891	n:1810000
HIST2H2BE   1810000 perm   1578 sec   (1147 perm/sec)   p_kst 4.922652e-04   p_cons 3.032917e-01   p_joint 4.922652e-04

Joint ci ratio: 1.309257e-01	ci left: 4.600717e-04	ci right 5.250514e-04	k: 895	n:1820000
Cons ci ratio: 4.403793e-03	ci left: 3.026415e-01	ci right 3.039778e-01	k: 552023	n:1820000
KS ci ratio: 1.309257e-01	ci left: 4.600717e-04	ci right 5.250514e-04	k: 895	n:1820000
HIST2H2BE   1820000 perm   1594 sec   (1142 perm/sec)   p_kst 4.917582e-04   p_cons 3.033093e-01   p_joint 4.917582e-04

Joint ci ratio: 1.304172e-01	ci left: 4.612578e-04	ci right 5.261323e-04	k: 902	n:1830000
Cons ci ratio: 4.391648e-03	ci left: 3.026526e-01	ci right 3.039852e-01	k: 555073	n:1830000
KS ci ratio: 1.304172e-01	ci left: 4.612578e-04	ci right 5.261323e-04	k: 902	n:1830000
HIST2H2BE   1830000 perm   1609 sec   (1137 perm/sec)   p_kst 4.928962e-04   p_cons 3.033186e-01   p_joint 4.928962e-04

Joint ci ratio: 1.299146e-01	ci left: 4.624314e-04	ci right 5.272011e-04	k: 909	n:1840000
Cons ci ratio: 4.379542e-03	ci left: 3.026695e-01	ci right 3.039985e-01	k: 558134	n:1840000
KS ci ratio: 1.299146e-01	ci left: 4.624314e-04	ci right 5.272011e-04	k: 909	n:1840000
HIST2H2BE   1840000 perm   1625 sec   (1133 perm/sec)   p_kst 4.940217e-04   p_cons 3.033337e-01   p_joint 4.940217e-04

Joint ci ratio: 1.297010e-01	ci left: 4.615007e-04	ci right 5.260256e-04	k: 912	n:1850000
Cons ci ratio: 4.367562e-03	ci left: 3.026836e-01	ci right 3.040090e-01	k: 561190	n:1850000
KS ci ratio: 1.297010e-01	ci left: 4.615007e-04	ci right 5.260256e-04	k: 912	n:1850000
HIST2H2BE   1850000 perm   1640 sec   (1128 perm/sec)   p_kst 4.929730e-04   p_cons 3.033459e-01   p_joint 4.929730e-04

Joint ci ratio: 1.293473e-01	ci left: 4.616206e-04	ci right 5.259727e-04	k: 917	n:1860000
Cons ci ratio: 4.355886e-03	ci left: 3.026776e-01	ci right 3.039994e-01	k: 564209	n:1860000
KS ci ratio: 1.293473e-01	ci left: 4.616206e-04	ci right 5.259727e-04	k: 917	n:1860000
HIST2H2BE   1860000 perm   1656 sec   (1123 perm/sec)   p_kst 4.930108e-04   p_cons 3.033382e-01   p_joint 4.930108e-04

Joint ci ratio: 1.289266e-01	ci left: 4.622570e-04	ci right 5.264722e-04	k: 923	n:1870000
Cons ci ratio: 4.344363e-03	ci left: 3.026658e-01	ci right 3.039840e-01	k: 567217	n:1870000
KS ci ratio: 1.289266e-01	ci left: 4.622570e-04	ci right 5.264722e-04	k: 923	n:1870000
HIST2H2BE   1870000 perm   1673 sec   (1118 perm/sec)   p_kst 4.935829e-04   p_cons 3.033246e-01   p_joint 4.935829e-04

Joint ci ratio: 1.286485e-01	ci left: 4.618573e-04	ci right 5.258680e-04	k: 927	n:1880000
Cons ci ratio: 4.332915e-03	ci left: 3.026557e-01	ci right 3.039704e-01	k: 570228	n:1880000
KS ci ratio: 1.286485e-01	ci left: 4.618573e-04	ci right 5.258680e-04	k: 927	n:1880000
HIST2H2BE   1880000 perm   1688 sec   (1113 perm/sec)   p_kst 4.930851e-04   p_cons 3.033128e-01   p_joint 4.930851e-04

Joint ci ratio: 1.280974e-01	ci left: 4.635105e-04	ci right 5.274542e-04	k: 935	n:1890000
Cons ci ratio: 4.321281e-03	ci left: 3.026727e-01	ci right 3.039840e-01	k: 573290	n:1890000
KS ci ratio: 1.280974e-01	ci left: 4.635105e-04	ci right 5.274542e-04	k: 935	n:1890000
HIST2H2BE   1890000 perm   1705 sec   (1109 perm/sec)   p_kst 4.947090e-04   p_cons 3.033280e-01   p_joint 4.947090e-04

Joint ci ratio: 1.280292e-01	ci left: 4.615804e-04	ci right 5.252214e-04	k: 936	n:1900000
Cons ci ratio: 4.309697e-03	ci left: 3.026937e-01	ci right 3.040016e-01	k: 576360	n:1900000
KS ci ratio: 1.280292e-01	ci left: 4.615804e-04	ci right 5.252214e-04	k: 936	n:1900000
HIST2H2BE   1900000 perm   1720 sec   (1104 perm/sec)   p_kst 4.926316e-04   p_cons 3.033474e-01   p_joint 4.926316e-04

Joint ci ratio: 1.278929e-01	ci left: 4.601773e-04	ci right 5.235522e-04	k: 938	n:1910000
Cons ci ratio: 4.298834e-03	ci left: 3.026528e-01	ci right 3.039572e-01	k: 579312	n:1910000
KS ci ratio: 1.278929e-01	ci left: 4.601773e-04	ci right 5.235522e-04	k: 938	n:1910000
HIST2H2BE   1910000 perm   1737 sec   (1100 perm/sec)   p_kst 4.910995e-04   p_cons 3.033047e-01   p_joint 4.910995e-04

Joint ci ratio: 1.272842e-01	ci left: 4.623185e-04	ci right 5.256623e-04	k: 947	n:1920000
Cons ci ratio: 4.287836e-03	ci left: 3.026337e-01	ci right 3.039346e-01	k: 582305	n:1920000
KS ci ratio: 1.272842e-01	ci left: 4.623185e-04	ci right 5.256623e-04	k: 947	n:1920000
HIST2H2BE   1920000 perm   1753 sec   (1095 perm/sec)   p_kst 4.932292e-04   p_cons 3.032839e-01   p_joint 4.932292e-04

Joint ci ratio: 1.271503e-01	ci left: 4.609263e-04	ci right 5.240079e-04	k: 949	n:1930000
Cons ci ratio: 4.276702e-03	ci left: 3.026365e-01	ci right 3.039340e-01	k: 585340	n:1930000
KS ci ratio: 1.271503e-01	ci left: 4.609263e-04	ci right 5.240079e-04	k: 949	n:1930000
HIST2H2BE   1930000 perm   1770 sec   (1090 perm/sec)   p_kst 4.917098e-04   p_cons 3.032850e-01   p_joint 4.917098e-04

Joint ci ratio: 1.266181e-01	ci left: 4.625433e-04	ci right 5.255614e-04	k: 957	n:1940000
Cons ci ratio: 4.265347e-03	ci left: 3.026697e-01	ci right 3.039639e-01	k: 588434	n:1940000
KS ci ratio: 1.266181e-01	ci left: 4.625433e-04	ci right 5.255614e-04	k: 957	n:1940000
HIST2H2BE   1940000 perm   1786 sec   (1086 perm/sec)   p_kst 4.932990e-04   p_cons 3.033165e-01   p_joint 4.932990e-04

Joint ci ratio: 1.260927e-01	ci left: 4.641442e-04	ci right 5.270983e-04	k: 965	n:1950000
Cons ci ratio: 4.254041e-03	ci left: 3.027066e-01	ci right 3.039976e-01	k: 591536	n:1950000
KS ci ratio: 1.260927e-01	ci left: 4.641442e-04	ci right 5.270983e-04	k: 965	n:1950000
HIST2H2BE   1950000 perm   1803 sec   (1081 perm/sec)   p_kst 4.948718e-04   p_cons 3.033518e-01   p_joint 4.948718e-04

Joint ci ratio: 1.260276e-01	ci left: 4.622702e-04	ci right 5.249354e-04	k: 966	n:1960000
Cons ci ratio: 4.243229e-03	ci left: 3.027029e-01	ci right 3.039905e-01	k: 594559	n:1960000
KS ci ratio: 1.260276e-01	ci left: 4.622702e-04	ci right 5.249354e-04	k: 966	n:1960000
HIST2H2BE   1960000 perm   1820 sec   (1077 perm/sec)   p_kst 4.928571e-04   p_cons 3.033464e-01   p_joint 4.928571e-04

Joint ci ratio: 1.258975e-01	ci left: 4.609068e-04	ci right 5.233179e-04	k: 968	n:1970000
Cons ci ratio: 4.232565e-03	ci left: 3.026926e-01	ci right 3.039770e-01	k: 597569	n:1970000
KS ci ratio: 1.258975e-01	ci left: 4.609068e-04	ci right 5.233179e-04	k: 968	n:1970000
HIST2H2BE   1970000 perm   1837 sec   (1073 perm/sec)   p_kst 4.913706e-04   p_cons 3.033345e-01   p_joint 4.913706e-04

Joint ci ratio: 1.257032e-01	ci left: 4.600465e-04	ci right 5.222377e-04	k: 971	n:1980000
Cons ci ratio: 4.221598e-03	ci left: 3.027208e-01	ci right 3.040020e-01	k: 600655	n:1980000
KS ci ratio: 1.257032e-01	ci left: 4.600465e-04	ci right 5.222377e-04	k: 971	n:1980000
HIST2H2BE   1980000 perm   1853 sec   (1068 perm/sec)   p_kst 4.904040e-04   p_cons 3.033611e-01   p_joint 4.904040e-04

Joint ci ratio: 1.252529e-01	ci left: 4.611419e-04	ci right 5.232414e-04	k: 978	n:1990000
Cons ci ratio: 4.211116e-03	ci left: 3.027086e-01	ci right 3.039865e-01	k: 603661	n:1990000
KS ci ratio: 1.252529e-01	ci left: 4.611419e-04	ci right 5.232414e-04	k: 978	n:1990000
HIST2H2BE   1990000 perm   1870 sec   (1064 perm/sec)   p_kst 4.914573e-04   p_cons 3.033472e-01   p_joint 4.914573e-04

Joint ci ratio: 1.250615e-01	ci left: 4.602892e-04	ci right 5.221721e-04	k: 981	n:2000000
Cons ci ratio: 4.200274e-03	ci left: 3.027404e-01	ci right 3.040152e-01	k: 606755	n:2000000
KS ci ratio: 1.250615e-01	ci left: 4.602892e-04	ci right 5.221721e-04	k: 981	n:2000000
HIST2H2BE   2000000 perm   1887 sec   (1060 perm/sec)   p_kst 4.905000e-04   p_cons 3.033775e-01   p_joint 4.905000e-04

Joint ci ratio: 1.248076e-01	ci left: 4.599270e-04	ci right 5.216265e-04	k: 985	n:2010000
Cons ci ratio: 4.189491e-03	ci left: 3.027744e-01	ci right 3.040460e-01	k: 609854	n:2010000
KS ci ratio: 1.248076e-01	ci left: 4.599270e-04	ci right 5.216265e-04	k: 985	n:2010000
HIST2H2BE   2010000 perm   1904 sec   (1055 perm/sec)   p_kst 4.900498e-04   p_cons 3.034100e-01   p_joint 4.900498e-04

Joint ci ratio: 1.244295e-01	ci left: 4.605279e-04	ci right 5.221070e-04	k: 991	n:2020000
Cons ci ratio: 4.178947e-03	ci left: 3.027923e-01	ci right 3.040608e-01	k: 612921	n:2020000
KS ci ratio: 1.244295e-01	ci left: 4.605279e-04	ci right 5.221070e-04	k: 991	n:2020000
HIST2H2BE   2020000 perm   1921 sec   (1051 perm/sec)   p_kst 4.905941e-04   p_cons 3.034262e-01   p_joint 4.905941e-04

Joint ci ratio: 1.240549e-01	ci left: 4.611231e-04	ci right 5.225825e-04	k: 997	n:2030000
Cons ci ratio: 4.168293e-03	ci left: 3.028292e-01	ci right 3.040946e-01	k: 616027	n:2030000
KS ci ratio: 1.240549e-01	ci left: 4.611231e-04	ci right 5.225825e-04	k: 997	n:2030000
HIST2H2BE   2030000 perm   1938 sec   (1047 perm/sec)   p_kst 4.911330e-04   p_cons 3.034616e-01   p_joint 4.911330e-04

Joint ci ratio: 1.236836e-01	ci left: 4.617127e-04	ci right 5.230531e-04	k: 1003	n:2040000
Cons ci ratio: 4.158067e-03	ci left: 3.028304e-01	ci right 3.040927e-01	k: 619061	n:2040000
KS ci ratio: 1.236836e-01	ci left: 4.617127e-04	ci right 5.230531e-04	k: 1003	n:2040000
HIST2H2BE   2040000 perm   1955 sec   (1043 perm/sec)   p_kst 4.916667e-04   p_cons 3.034613e-01   p_joint 4.916667e-04

Joint ci ratio: 1.231937e-01	ci left: 4.632424e-04	ci right 5.245244e-04	k: 1011	n:2050000
Cons ci ratio: 4.147839e-03	ci left: 3.028395e-01	ci right 3.040987e-01	k: 622111	n:2050000
KS ci ratio: 1.231937e-01	ci left: 4.632424e-04	ci right 5.245244e-04	k: 1011	n:2050000
HIST2H2BE   2050000 perm   1973 sec   (1039 perm/sec)   p_kst 4.931707e-04   p_cons 3.034688e-01   p_joint 4.931707e-04

Joint ci ratio: 1.230116e-01	ci left: 4.624052e-04	ci right 5.234793e-04	k: 1014	n:2060000
Cons ci ratio: 4.137506e-03	ci left: 3.028668e-01	ci right 3.041230e-01	k: 625199	n:2060000
KS ci ratio: 1.230116e-01	ci left: 4.624052e-04	ci right 5.234793e-04	k: 1014	n:2060000
HIST2H2BE   2060000 perm   1990 sec   (1035 perm/sec)   p_kst 4.922330e-04   p_cons 3.034947e-01   p_joint 4.922330e-04

Joint ci ratio: 1.227699e-01	ci left: 4.620443e-04	ci right 5.229422e-04	k: 1018	n:2070000
Cons ci ratio: 4.127783e-03	ci left: 3.028394e-01	ci right 3.040925e-01	k: 628174	n:2070000
KS ci ratio: 1.227699e-01	ci left: 4.620443e-04	ci right 5.229422e-04	k: 1018	n:2070000
HIST2H2BE   2070000 perm   2007 sec   (1031 perm/sec)   p_kst 4.917874e-04   p_cons 3.034657e-01   p_joint 4.917874e-04

Joint ci ratio: 1.225297e-01	ci left: 4.616870e-04	ci right 5.224101e-04	k: 1022	n:2080000
Cons ci ratio: 4.117837e-03	ci left: 3.028421e-01	ci right 3.040921e-01	k: 631211	n:2080000
KS ci ratio: 1.225297e-01	ci left: 4.616870e-04	ci right 5.224101e-04	k: 1022	n:2080000
HIST2H2BE   2080000 perm   2025 sec   (1027 perm/sec)   p_kst 4.913462e-04   p_cons 3.034668e-01   p_joint 4.913462e-04

Joint ci ratio: 1.221126e-01	ci left: 4.627248e-04	ci right 5.233622e-04	k: 1029	n:2090000
Cons ci ratio: 4.108084e-03	ci left: 3.028322e-01	ci right 3.040793e-01	k: 634222	n:2090000
KS ci ratio: 1.221126e-01	ci left: 4.627248e-04	ci right 5.233622e-04	k: 1029	n:2090000
HIST2H2BE   2090000 perm   2043 sec   (1023 perm/sec)   p_kst 4.923445e-04   p_cons 3.034555e-01   p_joint 4.923445e-04

Joint ci ratio: 1.218762e-01	ci left: 4.623679e-04	ci right 5.228329e-04	k: 1033	n:2100000
Cons ci ratio: 4.098400e-03	ci left: 3.028225e-01	ci right 3.040666e-01	k: 637233	n:2100000
KS ci ratio: 1.218762e-01	ci left: 4.623679e-04	ci right 5.228329e-04	k: 1033	n:2100000
HIST2H2BE   2100000 perm   2061 sec   (1019 perm/sec)   p_kst 4.919048e-04   p_cons 3.034443e-01   p_joint 4.919048e-04

Joint ci ratio: 1.216411e-01	ci left: 4.620146e-04	ci right 5.223085e-04	k: 1037	n:2110000
Cons ci ratio: 4.088803e-03	ci left: 3.028110e-01	ci right 3.040521e-01	k: 640240	n:2110000
KS ci ratio: 1.216411e-01	ci left: 4.620146e-04	ci right 5.223085e-04	k: 1037	n:2110000
HIST2H2BE   2110000 perm   2078 sec   (1015 perm/sec)   p_kst 4.914692e-04   p_cons 3.034313e-01   p_joint 4.914692e-04

Joint ci ratio: 1.213492e-01	ci left: 4.621221e-04	ci right 5.222749e-04	k: 1042	n:2120000
Cons ci ratio: 4.079436e-03	ci left: 3.027826e-01	ci right 3.040208e-01	k: 643211	n:2120000
KS ci ratio: 1.213492e-01	ci left: 4.621221e-04	ci right 5.222749e-04	k: 1042	n:2120000
HIST2H2BE   2120000 perm   2095 sec   (1012 perm/sec)   p_kst 4.915094e-04   p_cons 3.034014e-01   p_joint 4.915094e-04

Joint ci ratio: 1.211172e-01	ci left: 4.617735e-04	ci right 5.217578e-04	k: 1046	n:2130000
Cons ci ratio: 4.069383e-03	ci left: 3.028324e-01	ci right 3.040677e-01	k: 646348	n:2130000
KS ci ratio: 1.211172e-01	ci left: 4.617735e-04	ci right 5.217578e-04	k: 1046	n:2130000
HIST2H2BE   2130000 perm   2113 sec   (1008 perm/sec)   p_kst 4.910798e-04   p_cons 3.034498e-01   p_joint 4.910798e-04

Joint ci ratio: 1.208290e-01	ci left: 4.618814e-04	ci right 5.217267e-04	k: 1051	n:2140000
Cons ci ratio: 4.059853e-03	ci left: 3.028350e-01	ci right 3.040674e-01	k: 649385	n:2140000
KS ci ratio: 1.208290e-01	ci left: 4.618814e-04	ci right 5.217267e-04	k: 1051	n:2140000
HIST2H2BE   2140000 perm   2131 sec   (1004 perm/sec)   p_kst 4.911215e-04   p_cons 3.034509e-01   p_joint 4.911215e-04

Joint ci ratio: 1.205429e-01	ci left: 4.619885e-04	ci right 5.216959e-04	k: 1056	n:2150000
Cons ci ratio: 4.050193e-03	ci left: 3.028580e-01	ci right 3.040876e-01	k: 652466	n:2150000
KS ci ratio: 1.205429e-01	ci left: 4.619885e-04	ci right 5.216959e-04	k: 1056	n:2150000
HIST2H2BE   2150000 perm   2149 sec   (1000 perm/sec)   p_kst 4.911628e-04   p_cons 3.034726e-01   p_joint 4.911628e-04

Joint ci ratio: 1.203723e-01	ci left: 4.611967e-04	ci right 5.207113e-04	k: 1059	n:2160000
Cons ci ratio: 4.040775e-03	ci left: 3.028628e-01	ci right 3.040895e-01	k: 655508	n:2160000
KS ci ratio: 1.203723e-01	ci left: 4.611967e-04	ci right 5.207113e-04	k: 1059	n:2160000
HIST2H2BE   2160000 perm   2167 sec   (997 perm/sec)   p_kst 4.902778e-04   p_cons 3.034759e-01   p_joint 4.902778e-04

Joint ci ratio: 1.200894e-01	ci left: 4.613063e-04	ci right 5.206852e-04	k: 1064	n:2170000
Cons ci ratio: 4.031540e-03	ci left: 3.028551e-01	ci right 3.040790e-01	k: 658523	n:2170000
KS ci ratio: 1.200894e-01	ci left: 4.613063e-04	ci right 5.206852e-04	k: 1064	n:2170000
HIST2H2BE   2170000 perm   2186 sec   (993 perm/sec)   p_kst 4.903226e-04   p_cons 3.034668e-01   p_joint 4.903226e-04

Joint ci ratio: 1.199768e-01	ci left: 4.600800e-04	ci right 5.192417e-04	k: 1066	n:2180000
Cons ci ratio: 4.022212e-03	ci left: 3.028640e-01	ci right 3.040851e-01	k: 661574	n:2180000
KS ci ratio: 1.199768e-01	ci left: 4.600800e-04	ci right 5.192417e-04	k: 1066	n:2180000
HIST2H2BE   2180000 perm   2204 sec   (989 perm/sec)   p_kst 4.889908e-04   p_cons 3.034743e-01   p_joint 4.889908e-04

Joint ci ratio: 1.197526e-01	ci left: 4.597509e-04	ci right 5.187519e-04	k: 1070	n:2190000
Cons ci ratio: 4.013117e-03	ci left: 3.028551e-01	ci right 3.040733e-01	k: 664586	n:2190000
KS ci ratio: 1.197526e-01	ci left: 4.597509e-04	ci right 5.187519e-04	k: 1070	n:2190000
HIST2H2BE   2190000 perm   2222 sec   (986 perm/sec)   p_kst 4.885845e-04   p_cons 3.034639e-01   p_joint 4.885845e-04

Joint ci ratio: 1.196969e-01	ci left: 4.581021e-04	ci right 5.168622e-04	k: 1071	n:2200000
Cons ci ratio: 4.003932e-03	ci left: 3.028621e-01	ci right 3.040776e-01	k: 667633	n:2200000
KS ci ratio: 1.196969e-01	ci left: 4.581021e-04	ci right 5.168622e-04	k: 1071	n:2200000
HIST2H2BE   2200000 perm   2240 sec   (982 perm/sec)   p_kst 4.868182e-04   p_cons 3.034695e-01   p_joint 4.868182e-04

Joint ci ratio: 1.194742e-01	ci left: 4.577850e-04	ci right 5.163875e-04	k: 1075	n:2210000
Cons ci ratio: 3.995170e-03	ci left: 3.028310e-01	ci right 3.040437e-01	k: 670596	n:2210000
KS ci ratio: 1.194742e-01	ci left: 4.577850e-04	ci right 5.163875e-04	k: 1075	n:2210000
HIST2H2BE   2210000 perm   2259 sec   (978 perm/sec)   p_kst 4.864253e-04   p_cons 3.034371e-01   p_joint 4.864253e-04

Joint ci ratio: 1.193634e-01	ci left: 4.565969e-04	ci right 5.149892e-04	k: 1077	n:2220000
Cons ci ratio: 3.986261e-03	ci left: 3.028218e-01	ci right 3.040318e-01	k: 673607	n:2220000
KS ci ratio: 1.193634e-01	ci left: 4.565969e-04	ci right 5.149892e-04	k: 1077	n:2220000
HIST2H2BE   2220000 perm   2277 sec   (975 perm/sec)   p_kst 4.851351e-04   p_cons 3.034266e-01   p_joint 4.851351e-04

Joint ci ratio: 1.189777e-01	ci left: 4.575948e-04	ci right 5.159124e-04	k: 1084	n:2230000
Cons ci ratio: 3.977213e-03	ci left: 3.028338e-01	ci right 3.040411e-01	k: 676665	n:2230000
KS ci ratio: 1.189777e-01	ci left: 4.575948e-04	ci right 5.159124e-04	k: 1084	n:2230000
HIST2H2BE   2230000 perm   2296 sec   (971 perm/sec)   p_kst 4.860987e-04   p_cons 3.034372e-01   p_joint 4.860987e-04

Joint ci ratio: 1.188136e-01	ci left: 4.568514e-04	ci right 5.149883e-04	k: 1087	n:2240000
Cons ci ratio: 3.968113e-03	ci left: 3.028578e-01	ci right 3.040624e-01	k: 679750	n:2240000
KS ci ratio: 1.188136e-01	ci left: 4.568514e-04	ci right 5.149883e-04	k: 1087	n:2240000
HIST2H2BE   2240000 perm   2314 sec   (968 perm/sec)   p_kst 4.852679e-04   p_cons 3.034598e-01   p_joint 4.852679e-04

Joint ci ratio: 1.184873e-01	ci left: 4.574085e-04	ci right 5.154452e-04	k: 1093	n:2250000
Cons ci ratio: 3.959213e-03	ci left: 3.028669e-01	ci right 3.040688e-01	k: 682802	n:2250000
KS ci ratio: 1.184873e-01	ci left: 4.574085e-04	ci right 5.154452e-04	k: 1093	n:2250000
HIST2H2BE   2250000 perm   2333 sec   (964 perm/sec)   p_kst 4.857778e-04   p_cons 3.034676e-01   p_joint 4.857778e-04

Joint ci ratio: 1.181100e-01	ci left: 4.583903e-04	ci right 5.163535e-04	k: 1100	n:2260000
Cons ci ratio: 3.950211e-03	ci left: 3.028931e-01	ci right 3.040924e-01	k: 685893	n:2260000
KS ci ratio: 1.181100e-01	ci left: 4.583903e-04	ci right 5.163535e-04	k: 1100	n:2260000
HIST2H2BE   2260000 perm   2352 sec   (961 perm/sec)   p_kst 4.867257e-04   p_cons 3.034925e-01   p_joint 4.867257e-04

Joint ci ratio: 1.179494e-01	ci left: 4.576535e-04	ci right 5.154394e-04	k: 1103	n:2270000
Cons ci ratio: 3.941759e-03	ci left: 3.028667e-01	ci right 3.040633e-01	k: 688865	n:2270000
KS ci ratio: 1.179494e-01	ci left: 4.576535e-04	ci right 5.154394e-04	k: 1103	n:2270000
HIST2H2BE   2270000 perm   2371 sec   (957 perm/sec)   p_kst 4.859031e-04   p_cons 3.034648e-01   p_joint 4.859031e-04

Joint ci ratio: 1.177363e-01	ci left: 4.573489e-04	ci right 5.149847e-04	k: 1107	n:2280000
Cons ci ratio: 3.933002e-03	ci left: 3.028791e-01	ci right 3.040731e-01	k: 691925	n:2280000
KS ci ratio: 1.177363e-01	ci left: 4.573489e-04	ci right 5.149847e-04	k: 1107	n:2280000
HIST2H2BE   2280000 perm   2390 sec   (954 perm/sec)   p_kst 4.855263e-04   p_cons 3.034759e-01   p_joint 4.855263e-04

Joint ci ratio: 1.174188e-01	ci left: 4.578948e-04	ci right 5.154330e-04	k: 1113	n:2290000
Cons ci ratio: 3.924489e-03	ci left: 3.028714e-01	ci right 3.040627e-01	k: 694939	n:2290000
KS ci ratio: 1.174188e-01	ci left: 4.578948e-04	ci right 5.154330e-04	k: 1113	n:2290000
HIST2H2BE   2290000 perm   2409 sec   (951 perm/sec)   p_kst 4.860262e-04   p_cons 3.034668e-01   p_joint 4.860262e-04

Joint ci ratio: 1.173136e-01	ci left: 4.567480e-04	ci right 5.140871e-04	k: 1115	n:2300000
Cons ci ratio: 3.916318e-03	ci left: 3.028328e-01	ci right 3.040216e-01	k: 697882	n:2300000
KS ci ratio: 1.173136e-01	ci left: 4.567480e-04	ci right 5.140871e-04	k: 1115	n:2300000
HIST2H2BE   2300000 perm   2428 sec   (947 perm/sec)   p_kst 4.847826e-04   p_cons 3.034270e-01   p_joint 4.847826e-04

Joint ci ratio: 1.171040e-01	ci left: 4.564516e-04	ci right 5.136440e-04	k: 1119	n:2310000
Cons ci ratio: 3.907929e-03	ci left: 3.028236e-01	ci right 3.040098e-01	k: 700892	n:2310000
KS ci ratio: 1.171040e-01	ci left: 4.564516e-04	ci right 5.136440e-04	k: 1119	n:2310000
HIST2H2BE   2310000 perm   2448 sec   (944 perm/sec)   p_kst 4.844156e-04   p_cons 3.034165e-01   p_joint 4.844156e-04

Joint ci ratio: 1.166362e-01	ci left: 4.582500e-04	ci right 5.154226e-04	k: 1128	n:2320000
Cons ci ratio: 3.899538e-03	ci left: 3.028205e-01	ci right 3.040041e-01	k: 703916	n:2320000
KS ci ratio: 1.166362e-01	ci left: 4.582500e-04	ci right 5.154226e-04	k: 1128	n:2320000
HIST2H2BE   2320000 perm   2467 sec   (940 perm/sec)   p_kst 4.862069e-04   p_cons 3.034121e-01   p_joint 4.862069e-04

Joint ci ratio: 1.162762e-01	ci left: 4.592001e-04	ci right 5.163022e-04	k: 1135	n:2330000
Cons ci ratio: 3.890984e-03	ci left: 3.028410e-01	ci right 3.040221e-01	k: 706995	n:2330000
KS ci ratio: 1.162762e-01	ci left: 4.592001e-04	ci right 5.163022e-04	k: 1135	n:2330000
HIST2H2BE   2330000 perm   2487 sec   (937 perm/sec)   p_kst 4.871245e-04   p_cons 3.034313e-01   p_joint 4.871245e-04

Joint ci ratio: 1.159196e-01	ci left: 4.601423e-04	ci right 5.171741e-04	k: 1142	n:2340000
Cons ci ratio: 3.882752e-03	ci left: 3.028324e-01	ci right 3.040109e-01	k: 710006	n:2340000
KS ci ratio: 1.159196e-01	ci left: 4.601423e-04	ci right 5.171741e-04	k: 1142	n:2340000
HIST2H2BE   2340000 perm   2507 sec   (934 perm/sec)   p_kst 4.880342e-04   p_cons 3.034214e-01   p_joint 4.880342e-04

Joint ci ratio: 1.155662e-01	ci left: 4.610767e-04	ci right 5.180383e-04	k: 1149	n:2350000
Cons ci ratio: 3.874553e-03	ci left: 3.028259e-01	ci right 3.040019e-01	k: 713022	n:2350000
KS ci ratio: 1.155662e-01	ci left: 4.610767e-04	ci right 5.180383e-04	k: 1149	n:2350000
HIST2H2BE   2350000 perm   2526 sec   (930 perm/sec)   p_kst 4.889362e-04   p_cons 3.034136e-01   p_joint 4.889362e-04

Joint ci ratio: 1.153158e-01	ci left: 4.611805e-04	ci right 5.180230e-04	k: 1154	n:2360000
Cons ci ratio: 3.866325e-03	ci left: 3.028283e-01	ci right 3.040018e-01	k: 716059	n:2360000
KS ci ratio: 1.153158e-01	ci left: 4.611805e-04	ci right 5.180230e-04	k: 1154	n:2360000
HIST2H2BE   2360000 perm   2546 sec   (927 perm/sec)   p_kst 4.889831e-04   p_cons 3.034148e-01   p_joint 4.889831e-04

Joint ci ratio: 1.150670e-01	ci left: 4.612835e-04	ci right 5.180077e-04	k: 1159	n:2370000
Cons ci ratio: 3.858360e-03	ci left: 3.028076e-01	ci right 3.039786e-01	k: 719041	n:2370000
KS ci ratio: 1.150670e-01	ci left: 4.612835e-04	ci right 5.180077e-04	k: 1159	n:2370000
HIST2H2BE   2370000 perm   2566 sec   (924 perm/sec)   p_kst 4.890295e-04   p_cons 3.033928e-01   p_joint 4.890295e-04

Joint ci ratio: 1.145741e-01	ci left: 4.634264e-04	ci right 5.201534e-04	k: 1169	n:2380000
Cons ci ratio: 3.850353e-03	ci left: 3.027971e-01	ci right 3.039656e-01	k: 722047	n:2380000
KS ci ratio: 1.145741e-01	ci left: 4.634264e-04	ci right 5.201534e-04	k: 1169	n:2380000
HIST2H2BE   2380000 perm   2586 sec   (920 perm/sec)   p_kst 4.911765e-04   p_cons 3.033811e-01   p_joint 4.911765e-04

Joint ci ratio: 1.142328e-01	ci left: 4.643324e-04	ci right 5.209897e-04	k: 1176	n:2390000
Cons ci ratio: 3.842273e-03	ci left: 3.028000e-01	ci right 3.039661e-01	k: 725085	n:2390000
KS ci ratio: 1.142328e-01	ci left: 4.643324e-04	ci right 5.209897e-04	k: 1176	n:2390000
HIST2H2BE   2390000 perm   2606 sec   (917 perm/sec)   p_kst 4.920502e-04   p_cons 3.033828e-01   p_joint 4.920502e-04

Joint ci ratio: 1.140875e-01	ci left: 4.636120e-04	ci right 5.201046e-04	k: 1179	n:2400000
Cons ci ratio: 3.834063e-03	ci left: 3.028230e-01	ci right 3.039867e-01	k: 728171	n:2400000
KS ci ratio: 1.140875e-01	ci left: 4.636120e-04	ci right 5.201046e-04	k: 1179	n:2400000
HIST2H2BE   2400000 perm   2625 sec   (914 perm/sec)   p_kst 4.912500e-04   p_cons 3.034046e-01   p_joint 4.912500e-04

Joint ci ratio: 1.139910e-01	ci left: 4.624945e-04	ci right 5.188000e-04	k: 1181	n:2410000
Cons ci ratio: 3.826093e-03	ci left: 3.028250e-01	ci right 3.039863e-01	k: 731207	n:2410000
KS ci ratio: 1.139910e-01	ci left: 4.624945e-04	ci right 5.188000e-04	k: 1181	n:2410000
HIST2H2BE   2410000 perm   2645 sec   (911 perm/sec)   p_kst 4.900415e-04   p_cons 3.034054e-01   p_joint 4.900415e-04

Joint ci ratio: 1.138467e-01	ci left: 4.617877e-04	ci right 5.179312e-04	k: 1184	n:2420000
Cons ci ratio: 3.818277e-03	ci left: 3.028154e-01	ci right 3.039743e-01	k: 734215	n:2420000
KS ci ratio: 1.138467e-01	ci left: 4.617877e-04	ci right 5.179312e-04	k: 1184	n:2420000
HIST2H2BE   2420000 perm   2665 sec   (908 perm/sec)   p_kst 4.892562e-04   p_cons 3.033946e-01   p_joint 4.892562e-04

Joint ci ratio: 1.134167e-01	ci left: 4.634858e-04	ci right 5.196087e-04	k: 1193	n:2430000
Cons ci ratio: 3.810360e-03	ci left: 3.028224e-01	ci right 3.039789e-01	k: 737263	n:2430000
KS ci ratio: 1.134167e-01	ci left: 4.634858e-04	ci right 5.196087e-04	k: 1193	n:2430000
HIST2H2BE   2430000 perm   2685 sec   (905 perm/sec)   p_kst 4.909465e-04   p_cons 3.034004e-01   p_joint 4.909465e-04

Joint ci ratio: 1.133693e-01	ci left: 4.619845e-04	ci right 5.179007e-04	k: 1194	n:2440000
Cons ci ratio: 3.802463e-03	ci left: 3.028326e-01	ci right 3.039867e-01	k: 740319	n:2440000
KS ci ratio: 1.133693e-01	ci left: 4.619845e-04	ci right 5.179007e-04	k: 1194	n:2440000
HIST2H2BE   2440000 perm   2706 sec   (902 perm/sec)   p_kst 4.893443e-04   p_cons 3.034094e-01   p_joint 4.893443e-04

Joint ci ratio: 1.131801e-01	ci left: 4.616852e-04	ci right 5.174657e-04	k: 1198	n:2450000
Cons ci ratio: 3.795098e-03	ci left: 3.027889e-01	ci right 3.039406e-01	k: 743243	n:2450000
KS ci ratio: 1.131801e-01	ci left: 4.616852e-04	ci right 5.174657e-04	k: 1198	n:2450000
HIST2H2BE   2450000 perm   2726 sec   (899 perm/sec)   p_kst 4.889796e-04   p_cons 3.033645e-01   p_joint 4.889796e-04

Joint ci ratio: 1.128980e-01	ci left: 4.621785e-04	ci right 5.178701e-04	k: 1204	n:2460000
Cons ci ratio: 3.787401e-03	ci left: 3.027874e-01	ci right 3.039367e-01	k: 746270	n:2460000
KS ci ratio: 1.128980e-01	ci left: 4.621785e-04	ci right 5.178701e-04	k: 1204	n:2460000
HIST2H2BE   2460000 perm   2747 sec   (896 perm/sec)   p_kst 4.894309e-04   p_cons 3.033618e-01   p_joint 4.894309e-04

Joint ci ratio: 1.125250e-01	ci left: 4.634549e-04	ci right 5.191036e-04	k: 1212	n:2470000
Cons ci ratio: 3.779511e-03	ci left: 3.028125e-01	ci right 3.039596e-01	k: 749363	n:2470000
KS ci ratio: 1.125250e-01	ci left: 4.634549e-04	ci right 5.191036e-04	k: 1212	n:2470000
HIST2H2BE   2470000 perm   2767 sec   (893 perm/sec)   p_kst 4.906883e-04   p_cons 3.033858e-01   p_joint 4.906883e-04

Joint ci ratio: 1.122477e-01	ci left: 4.639375e-04	ci right 5.194978e-04	k: 1218	n:2480000
Cons ci ratio: 3.772016e-03	ci left: 3.027988e-01	ci right 3.039435e-01	k: 752360	n:2480000
KS ci ratio: 1.122477e-01	ci left: 4.639375e-04	ci right 5.194978e-04	k: 1218	n:2480000
HIST2H2BE   2480000 perm   2788 sec   (890 perm/sec)   p_kst 4.911290e-04   p_cons 3.033710e-01   p_joint 4.911290e-04

Joint ci ratio: 1.118355e-01	ci left: 4.655875e-04	ci right 5.211271e-04	k: 1227	n:2490000
Cons ci ratio: 3.764265e-03	ci left: 3.028190e-01	ci right 3.039614e-01	k: 755441	n:2490000
KS ci ratio: 1.118355e-01	ci left: 4.655875e-04	ci right 5.211271e-04	k: 1227	n:2490000
HIST2H2BE   2490000 perm   2808 sec   (887 perm/sec)   p_kst 4.927711e-04   p_cons 3.033900e-01   p_joint 4.927711e-04

Joint ci ratio: 1.116538e-01	ci left: 4.652804e-04	ci right 5.206873e-04	k: 1231	n:2500000
Cons ci ratio: 3.756768e-03	ci left: 3.028158e-01	ci right 3.039559e-01	k: 758464	n:2500000
KS ci ratio: 1.116538e-01	ci left: 4.652804e-04	ci right 5.206873e-04	k: 1231	n:2500000
HIST2H2BE   2500000 perm   2829 sec   (884 perm/sec)   p_kst 4.924000e-04   p_cons 3.033856e-01   p_joint 4.924000e-04

Joint ci ratio: 1.113379e-01	ci left: 4.661378e-04	ci right 5.214794e-04	k: 1238	n:2510000
Cons ci ratio: 3.749361e-03	ci left: 3.028074e-01	ci right 3.039452e-01	k: 761474	n:2510000
KS ci ratio: 1.113379e-01	ci left: 4.661378e-04	ci right 5.214794e-04	k: 1238	n:2510000
HIST2H2BE   2510000 perm   2850 sec   (881 perm/sec)   p_kst 4.932271e-04   p_cons 3.033761e-01   p_joint 4.932271e-04

Joint ci ratio: 1.111139e-01	ci left: 4.662170e-04	ci right 5.214494e-04	k: 1243	n:2520000
Cons ci ratio: 3.742075e-03	ci left: 3.027904e-01	ci right 3.039259e-01	k: 764462	n:2520000
KS ci ratio: 1.111139e-01	ci left: 4.662170e-04	ci right 5.214494e-04	k: 1243	n:2520000
HIST2H2BE   2520000 perm   2871 sec   (878 perm/sec)   p_kst 4.932540e-04   p_cons 3.033579e-01   p_joint 4.932540e-04

Joint ci ratio: 1.109358e-01	ci left: 4.659113e-04	ci right 5.210132e-04	k: 1247	n:2530000
Cons ci ratio: 3.734441e-03	ci left: 3.028177e-01	ci right 3.039511e-01	k: 767562	n:2530000
KS ci ratio: 1.109358e-01	ci left: 4.659113e-04	ci right 5.210132e-04	k: 1247	n:2530000
HIST2H2BE   2530000 perm   2892 sec   (875 perm/sec)   p_kst 4.928854e-04   p_cons 3.033842e-01   p_joint 4.928854e-04

Joint ci ratio: 1.106700e-01	ci left: 4.663738e-04	ci right 5.213896e-04	k: 1253	n:2540000
Cons ci ratio: 3.727005e-03	ci left: 3.028276e-01	ci right 3.039587e-01	k: 770618	n:2540000
KS ci ratio: 1.106700e-01	ci left: 4.663738e-04	ci right 5.213896e-04	k: 1253	n:2540000
HIST2H2BE   2540000 perm   2913 sec   (872 perm/sec)   p_kst 4.933071e-04   p_cons 3.033929e-01   p_joint 4.933071e-04

Joint ci ratio: 1.104940e-01	ci left: 4.660701e-04	ci right 5.209569e-04	k: 1257	n:2550000
Cons ci ratio: 3.719845e-03	ci left: 3.028111e-01	ci right 3.039400e-01	k: 773607	n:2550000
KS ci ratio: 1.104940e-01	ci left: 4.660701e-04	ci right 5.209569e-04	k: 1257	n:2550000
HIST2H2BE   2550000 perm   2934 sec   (869 perm/sec)   p_kst 4.929412e-04   p_cons 3.033753e-01   p_joint 4.929412e-04

Joint ci ratio: 1.103187e-01	ci left: 4.657689e-04	ci right 5.205276e-04	k: 1261	n:2560000
Cons ci ratio: 3.712884e-03	ci left: 3.027767e-01	ci right 3.039034e-01	k: 776550	n:2560000
KS ci ratio: 1.103187e-01	ci left: 4.657689e-04	ci right 5.205276e-04	k: 1261	n:2560000
HIST2H2BE   2560000 perm   2955 sec   (866 perm/sec)   p_kst 4.925781e-04   p_cons 3.033398e-01   p_joint 4.925781e-04

Joint ci ratio: 1.101008e-01	ci left: 4.658484e-04	ci right 5.205013e-04	k: 1266	n:2570000
Cons ci ratio: 3.705618e-03	ci left: 3.027820e-01	ci right 3.039064e-01	k: 779594	n:2570000
KS ci ratio: 1.101008e-01	ci left: 4.658484e-04	ci right 5.205013e-04	k: 1266	n:2570000
HIST2H2BE   2570000 perm   2976 sec   (863 perm/sec)   p_kst 4.926070e-04   p_cons 3.033440e-01   p_joint 4.926070e-04

Joint ci ratio: 1.097979e-01	ci left: 4.666814e-04	ci right 5.212716e-04	k: 1273	n:2580000
Cons ci ratio: 3.698404e-03	ci left: 3.027860e-01	ci right 3.039083e-01	k: 782635	n:2580000
KS ci ratio: 1.097979e-01	ci left: 4.666814e-04	ci right 5.212716e-04	k: 1273	n:2580000
HIST2H2BE   2580000 perm   2998 sec   (861 perm/sec)   p_kst 4.934109e-04   p_cons 3.033469e-01   p_joint 4.934109e-04

Joint ci ratio: 1.094120e-01	ci left: 4.682592e-04	ci right 5.228291e-04	k: 1282	n:2590000
Cons ci ratio: 3.691518e-03	ci left: 3.027572e-01	ci right 3.038772e-01	k: 785591	n:2590000
KS ci ratio: 1.094120e-01	ci left: 4.682592e-04	ci right 5.228291e-04	k: 1282	n:2590000
HIST2H2BE   2590000 perm   3020 sec   (858 perm/sec)   p_kst 4.949807e-04   p_cons 3.033170e-01   p_joint 4.949807e-04

Joint ci ratio: 1.091995e-01	ci left: 4.683287e-04	ci right 5.227938e-04	k: 1287	n:2600000
Cons ci ratio: 3.684550e-03	ci left: 3.027424e-01	ci right 3.038603e-01	k: 788583	n:2600000
KS ci ratio: 1.091995e-01	ci left: 4.683287e-04	ci right 5.227938e-04	k: 1287	n:2600000
HIST2H2BE   2600000 perm   3042 sec   (855 perm/sec)   p_kst 4.950000e-04   p_cons 3.033012e-01   p_joint 4.950000e-04

Joint ci ratio: 1.089460e-01	ci left: 4.687705e-04	ci right 5.231523e-04	k: 1293	n:2610000
Cons ci ratio: 3.677268e-03	ci left: 3.027684e-01	ci right 3.038842e-01	k: 791681	n:2610000
KS ci ratio: 1.089460e-01	ci left: 4.687705e-04	ci right 5.231523e-04	k: 1293	n:2610000
HIST2H2BE   2610000 perm   3063 sec   (852 perm/sec)   p_kst 4.954023e-04   p_cons 3.033261e-01   p_joint 4.954023e-04

Joint ci ratio: 1.087361e-01	ci left: 4.688377e-04	ci right 5.231159e-04	k: 1298	n:2620000
Cons ci ratio: 3.670364e-03	ci left: 3.027556e-01	ci right 3.038692e-01	k: 794678	n:2620000
KS ci ratio: 1.087361e-01	ci left: 4.688377e-04	ci right 5.231159e-04	k: 1298	n:2620000
HIST2H2BE   2620000 perm   3085 sec   (849 perm/sec)   p_kst 4.954198e-04   p_cons 3.033122e-01   p_joint 4.954198e-04

Joint ci ratio: 1.084027e-01	ci left: 4.700143e-04	ci right 5.242512e-04	k: 1306	n:2630000
Cons ci ratio: 3.663578e-03	ci left: 3.027338e-01	ci right 3.038453e-01	k: 797651	n:2630000
KS ci ratio: 1.084027e-01	ci left: 4.700143e-04	ci right 5.242512e-04	k: 1306	n:2630000
HIST2H2BE   2630000 perm   3106 sec   (847 perm/sec)   p_kst 4.965779e-04   p_cons 3.032894e-01   p_joint 4.965779e-04

Joint ci ratio: 1.078675e-01	ci left: 4.730251e-04	ci right 5.273228e-04	k: 1319	n:2640000
Cons ci ratio: 3.656501e-03	ci left: 3.027501e-01	ci right 3.038595e-01	k: 800724	n:2640000
KS ci ratio: 1.078675e-01	ci left: 4.730251e-04	ci right 5.273228e-04	k: 1319	n:2640000
HIST2H2BE   2640000 perm   3128 sec   (844 perm/sec)   p_kst 4.996212e-04   p_cons 3.033045e-01   p_joint 4.996212e-04

Joint ci ratio: 1.077044e-01	ci left: 4.727088e-04	ci right 5.268830e-04	k: 1323	n:2650000
Cons ci ratio: 3.649387e-03	ci left: 3.027752e-01	ci right 3.038826e-01	k: 803821	n:2650000
KS ci ratio: 1.077044e-01	ci left: 4.727088e-04	ci right 5.268830e-04	k: 1323	n:2650000
HIST2H2BE   2650000 perm   3150 sec   (841 perm/sec)   p_kst 4.992453e-04   p_cons 3.033287e-01   p_joint 4.992453e-04

Joint ci ratio: 1.076232e-01	ci left: 4.716633e-04	ci right 5.256744e-04	k: 1325	n:2660000
Cons ci ratio: 3.642665e-03	ci left: 3.027596e-01	ci right 3.038649e-01	k: 806810	n:2660000
KS ci ratio: 1.076232e-01	ci left: 4.716633e-04	ci right 5.256744e-04	k: 1325	n:2660000
HIST2H2BE   2660000 perm   3172 sec   (839 perm/sec)   p_kst 4.981203e-04   p_cons 3.033120e-01   p_joint 4.981203e-04

Joint ci ratio: 1.074613e-01	ci left: 4.713546e-04	ci right 5.252440e-04	k: 1329	n:2670000
Cons ci ratio: 3.635985e-03	ci left: 3.027434e-01	ci right 3.038465e-01	k: 809797	n:2670000
KS ci ratio: 1.074613e-01	ci left: 4.713546e-04	ci right 5.252440e-04	k: 1329	n:2670000
HIST2H2BE   2670000 perm   3194 sec   (836 perm/sec)   p_kst 4.977528e-04   p_cons 3.032948e-01   p_joint 4.977528e-04

Joint ci ratio: 1.071795e-01	ci left: 4.721377e-04	ci right 5.259661e-04	k: 1336	n:2680000
Cons ci ratio: 3.629163e-03	ci left: 3.027482e-01	ci right 3.038493e-01	k: 812840	n:2680000
KS ci ratio: 1.071795e-01	ci left: 4.721377e-04	ci right 5.259661e-04	k: 1336	n:2680000
HIST2H2BE   2680000 perm   3216 sec   (833 perm/sec)   p_kst 4.985075e-04   p_cons 3.032985e-01   p_joint 4.985075e-04

Joint ci ratio: 1.069797e-01	ci left: 4.721915e-04	ci right 5.259193e-04	k: 1341	n:2690000
Cons ci ratio: 3.622456e-03	ci left: 3.027440e-01	ci right 3.038430e-01	k: 815859	n:2690000
KS ci ratio: 1.069797e-01	ci left: 4.721915e-04	ci right 5.259193e-04	k: 1341	n:2690000
HIST2H2BE   2690000 perm   3239 sec   (831 perm/sec)   p_kst 4.985130e-04   p_cons 3.032933e-01   p_joint 4.985130e-04

Joint ci ratio: 1.069001e-01	ci left: 4.711635e-04	ci right 5.247320e-04	k: 1343	n:2700000
Cons ci ratio: 3.615678e-03	ci left: 3.027525e-01	ci right 3.038494e-01	k: 818912	n:2700000
KS ci ratio: 1.069001e-01	ci left: 4.711635e-04	ci right 5.247320e-04	k: 1343	n:2700000
HIST2H2BE   2700000 perm   3260 sec   (828 perm/sec)   p_kst 4.974074e-04   p_cons 3.033007e-01   p_joint 4.974074e-04

Joint ci ratio: 1.067414e-01	ci left: 4.708615e-04	ci right 5.243112e-04	k: 1347	n:2710000
Cons ci ratio: 3.608998e-03	ci left: 3.027538e-01	ci right 3.038488e-01	k: 821946	n:2710000
KS ci ratio: 1.067414e-01	ci left: 4.708615e-04	ci right 5.243112e-04	k: 1347	n:2710000
HIST2H2BE   2710000 perm   3283 sec   (826 perm/sec)   p_kst 4.970480e-04   p_cons 3.033011e-01   p_joint 4.970480e-04

Joint ci ratio: 1.063476e-01	ci left: 4.727089e-04	ci right 5.261580e-04	k: 1357	n:2720000
Cons ci ratio: 3.602386e-03	ci left: 3.027515e-01	ci right 3.038445e-01	k: 824970	n:2720000
KS ci ratio: 1.063476e-01	ci left: 4.727089e-04	ci right 5.261580e-04	k: 1357	n:2720000
HIST2H2BE   2720000 perm   3305 sec   (823 perm/sec)   p_kst 4.988971e-04   p_cons 3.032978e-01   p_joint 4.988971e-04

Joint ci ratio: 1.061913e-01	ci left: 4.724036e-04	ci right 5.257348e-04	k: 1361	n:2730000
Cons ci ratio: 3.596128e-03	ci left: 3.027119e-01	ci right 3.038028e-01	k: 827892	n:2730000
KS ci ratio: 1.061913e-01	ci left: 4.724036e-04	ci right 5.257348e-04	k: 1361	n:2730000
HIST2H2BE   2730000 perm   3327 sec   (820 perm/sec)   p_kst 4.985348e-04   p_cons 3.032571e-01   p_joint 4.985348e-04

Joint ci ratio: 1.061524e-01	ci left: 4.710348e-04	ci right 5.241907e-04	k: 1362	n:2740000
Cons ci ratio: 3.589713e-03	ci left: 3.026948e-01	ci right 3.037837e-01	k: 830875	n:2740000
KS ci ratio: 1.061524e-01	ci left: 4.710348e-04	ci right 5.241907e-04	k: 1362	n:2740000
HIST2H2BE   2740000 perm   3350 sec   (818 perm/sec)   p_kst 4.970803e-04   p_cons 3.032391e-01   p_joint 4.970803e-04

Joint ci ratio: 1.059583e-01	ci left: 4.710919e-04	ci right 5.241510e-04	k: 1367	n:2750000
Cons ci ratio: 3.583071e-03	ci left: 3.027087e-01	ci right 3.037957e-01	k: 833943	n:2750000
KS ci ratio: 1.059583e-01	ci left: 4.710919e-04	ci right 5.241510e-04	k: 1367	n:2750000
HIST2H2BE   2750000 perm   3373 sec   (815 perm/sec)   p_kst 4.970909e-04   p_cons 3.032520e-01   p_joint 4.970909e-04

Joint ci ratio: 1.058423e-01	ci left: 4.704432e-04	ci right 5.233676e-04	k: 1370	n:2760000
Cons ci ratio: 3.576805e-03	ci left: 3.026824e-01	ci right 3.037673e-01	k: 836900	n:2760000
KS ci ratio: 1.058423e-01	ci left: 4.704432e-04	ci right 5.233676e-04	k: 1370	n:2760000
HIST2H2BE   2760000 perm   3396 sec   (813 perm/sec)   p_kst 4.963768e-04   p_cons 3.032246e-01   p_joint 4.963768e-04

Joint ci ratio: 1.056883e-01	ci left: 4.701507e-04	ci right 5.229604e-04	k: 1374	n:2770000
Cons ci ratio: 3.570423e-03	ci left: 3.026739e-01	ci right 3.037568e-01	k: 839906	n:2770000
KS ci ratio: 1.056883e-01	ci left: 4.701507e-04	ci right 5.229604e-04	k: 1374	n:2770000
HIST2H2BE   2770000 perm   3419 sec   (810 perm/sec)   p_kst 4.960289e-04   p_cons 3.032152e-01   p_joint 4.960289e-04

Joint ci ratio: 1.054584e-01	ci left: 4.705608e-04	ci right 5.232945e-04	k: 1380	n:2780000
Cons ci ratio: 3.564057e-03	ci left: 3.026676e-01	ci right 3.037486e-01	k: 842918	n:2780000
KS ci ratio: 1.054584e-01	ci left: 4.705608e-04	ci right 5.232945e-04	k: 1380	n:2780000
HIST2H2BE   2780000 perm   3442 sec   (808 perm/sec)   p_kst 4.964029e-04   p_cons 3.032079e-01   p_joint 4.964029e-04

Joint ci ratio: 1.053822e-01	ci left: 4.695721e-04	ci right 5.221546e-04	k: 1382	n:2790000
Cons ci ratio: 3.557755e-03	ci left: 3.026578e-01	ci right 3.037369e-01	k: 845920	n:2790000
KS ci ratio: 1.053822e-01	ci left: 4.695721e-04	ci right 5.221546e-04	k: 1382	n:2790000
HIST2H2BE   2790000 perm   3465 sec   (805 perm/sec)   p_kst 4.953405e-04   p_cons 3.031971e-01   p_joint 4.953405e-04

Joint ci ratio: 1.051543e-01	ci left: 4.699815e-04	ci right 5.224891e-04	k: 1388	n:2800000
Cons ci ratio: 3.551216e-03	ci left: 3.026802e-01	ci right 3.037573e-01	k: 849012	n:2800000
KS ci ratio: 1.051543e-01	ci left: 4.699815e-04	ci right 5.224891e-04	k: 1388	n:2800000
HIST2H2BE   2800000 perm   3488 sec   (803 perm/sec)   p_kst 4.957143e-04   p_cons 3.032186e-01   p_joint 4.957143e-04

Joint ci ratio: 1.048903e-01	ci left: 4.707347e-04	ci right 5.231862e-04	k: 1395	n:2810000
Cons ci ratio: 3.544566e-03	ci left: 3.027199e-01	ci right 3.037951e-01	k: 852153	n:2810000
KS ci ratio: 1.048903e-01	ci left: 4.707347e-04	ci right 5.231862e-04	k: 1395	n:2810000
HIST2H2BE   2810000 perm   3510 sec   (801 perm/sec)   p_kst 4.964413e-04   p_cons 3.032573e-01   p_joint 4.964413e-04

Joint ci ratio: 1.045910e-01	ci left: 4.718280e-04	ci right 5.242421e-04	k: 1403	n:2820000
Cons ci ratio: 3.538195e-03	ci left: 3.027305e-01	ci right 3.038039e-01	k: 855213	n:2820000
KS ci ratio: 1.045910e-01	ci left: 4.718280e-04	ci right 5.242421e-04	k: 1403	n:2820000
HIST2H2BE   2820000 perm   3534 sec   (798 perm/sec)   p_kst 4.975177e-04   p_cons 3.032670e-01   p_joint 4.975177e-04

Joint ci ratio: 1.044795e-01	ci left: 4.711931e-04	ci right 5.234774e-04	k: 1406	n:2830000
Cons ci ratio: 3.531943e-03	ci left: 3.027309e-01	ci right 3.038024e-01	k: 858244	n:2830000
KS ci ratio: 1.044795e-01	ci left: 4.711931e-04	ci right 5.234774e-04	k: 1406	n:2830000
HIST2H2BE   2830000 perm   3557 sec   (796 perm/sec)   p_kst 4.968198e-04   p_cons 3.032664e-01   p_joint 4.968198e-04

Joint ci ratio: 1.043313e-01	ci left: 4.709056e-04	ci right 5.230794e-04	k: 1410	n:2840000
Cons ci ratio: 3.525592e-03	ci left: 3.027471e-01	ci right 3.038167e-01	k: 861320	n:2840000
KS ci ratio: 1.043313e-01	ci left: 4.709056e-04	ci right 5.230794e-04	k: 1410	n:2840000
HIST2H2BE   2840000 perm   3580 sec   (793 perm/sec)   p_kst 4.964789e-04   p_cons 3.032817e-01   p_joint 4.964789e-04

Joint ci ratio: 1.041469e-01	ci left: 4.709620e-04	ci right 5.230441e-04	k: 1415	n:2850000
Cons ci ratio: 3.519427e-03	ci left: 3.027449e-01	ci right 3.038126e-01	k: 864344	n:2850000
KS ci ratio: 1.041469e-01	ci left: 4.709620e-04	ci right 5.230441e-04	k: 1415	n:2850000
HIST2H2BE   2850000 perm   3603 sec   (791 perm/sec)   p_kst 4.964912e-04   p_cons 3.032786e-01   p_joint 4.964912e-04

Joint ci ratio: 1.040368e-01	ci left: 4.703369e-04	ci right 5.222916e-04	k: 1418	n:2860000
Cons ci ratio: 3.513416e-03	ci left: 3.027281e-01	ci right 3.037939e-01	k: 867326	n:2860000
KS ci ratio: 1.040368e-01	ci left: 4.703369e-04	ci right 5.222916e-04	k: 1418	n:2860000
HIST2H2BE   2860000 perm   3626 sec   (789 perm/sec)   p_kst 4.958042e-04   p_cons 3.032608e-01   p_joint 4.958042e-04

Joint ci ratio: 1.038175e-01	ci left: 4.707343e-04	ci right 5.226166e-04	k: 1424	n:2870000
Cons ci ratio: 3.507306e-03	ci left: 3.027271e-01	ci right 3.037911e-01	k: 870353	n:2870000
KS ci ratio: 1.038175e-01	ci left: 4.707343e-04	ci right 5.226166e-04	k: 1424	n:2870000
HIST2H2BE   2870000 perm   3649 sec   (786 perm/sec)   p_kst 4.961672e-04   p_cons 3.032589e-01   p_joint 4.961672e-04

Joint ci ratio: 1.035634e-01	ci left: 4.714674e-04	ci right 5.232955e-04	k: 1431	n:2880000
Cons ci ratio: 3.501199e-03	ci left: 3.027296e-01	ci right 3.037917e-01	k: 873390	n:2880000
KS ci ratio: 1.035634e-01	ci left: 4.714674e-04	ci right 5.232955e-04	k: 1431	n:2880000
HIST2H2BE   2880000 perm   3673 sec   (784 perm/sec)   p_kst 4.968750e-04   p_cons 3.032604e-01   p_joint 4.968750e-04

Joint ci ratio: 1.033831e-01	ci left: 4.715213e-04	ci right 5.232597e-04	k: 1436	n:2890000
Cons ci ratio: 3.495121e-03	ci left: 3.027323e-01	ci right 3.037926e-01	k: 876428	n:2890000
KS ci ratio: 1.033831e-01	ci left: 4.715213e-04	ci right 5.232597e-04	k: 1436	n:2890000
HIST2H2BE   2890000 perm   3697 sec   (782 perm/sec)   p_kst 4.968858e-04   p_cons 3.032623e-01   p_joint 4.968858e-04

Joint ci ratio: 1.032395e-01	ci left: 4.712391e-04	ci right 5.228703e-04	k: 1440	n:2900000
Cons ci ratio: 3.488867e-03	ci left: 3.027603e-01	ci right 3.038187e-01	k: 879539	n:2900000
KS ci ratio: 1.032395e-01	ci left: 4.712391e-04	ci right 5.228703e-04	k: 1440	n:2900000
HIST2H2BE   2900000 perm   3720 sec   (779 perm/sec)   p_kst 4.965517e-04   p_cons 3.032893e-01   p_joint 4.965517e-04

Joint ci ratio: 1.030966e-01	ci left: 4.709588e-04	ci right 5.224835e-04	k: 1444	n:2910000
Cons ci ratio: 3.482989e-03	ci left: 3.027465e-01	ci right 3.038031e-01	k: 882529	n:2910000
KS ci ratio: 1.030966e-01	ci left: 4.709588e-04	ci right 5.224835e-04	k: 1444	n:2910000
HIST2H2BE   2910000 perm   3745 sec   (777 perm/sec)   p_kst 4.962199e-04   p_cons 3.032746e-01   p_joint 4.962199e-04

Joint ci ratio: 1.027769e-01	ci left: 4.723488e-04	ci right 5.238557e-04	k: 1453	n:2920000
Cons ci ratio: 3.476706e-03	ci left: 3.027854e-01	ci right 3.038403e-01	k: 885673	n:2920000
KS ci ratio: 1.027769e-01	ci left: 4.723488e-04	ci right 5.238557e-04	k: 1453	n:2920000
HIST2H2BE   2920000 perm   3769 sec   (775 perm/sec)   p_kst 4.976027e-04   p_cons 3.033127e-01   p_joint 4.976027e-04

Joint ci ratio: 1.026007e-01	ci left: 4.723993e-04	ci right 5.238181e-04	k: 1458	n:2930000
Cons ci ratio: 3.470779e-03	ci left: 3.027849e-01	ci right 3.038380e-01	k: 888702	n:2930000
KS ci ratio: 1.026007e-01	ci left: 4.723993e-04	ci right 5.238181e-04	k: 1458	n:2930000
HIST2H2BE   2930000 perm   3793 sec   (773 perm/sec)   p_kst 4.976109e-04   p_cons 3.033113e-01   p_joint 4.976109e-04

Joint ci ratio: 1.024253e-01	ci left: 4.724496e-04	ci right 5.237806e-04	k: 1463	n:2940000
Cons ci ratio: 3.464855e-03	ci left: 3.027878e-01	ci right 3.038391e-01	k: 891741	n:2940000
KS ci ratio: 1.024253e-01	ci left: 4.724496e-04	ci right 5.237806e-04	k: 1463	n:2940000
HIST2H2BE   2940000 perm   3816 sec   (770 perm/sec)   p_kst 4.976190e-04   p_cons 3.033133e-01   p_joint 4.976190e-04

Joint ci ratio: 1.022509e-01	ci left: 4.724996e-04	ci right 5.237434e-04	k: 1468	n:2950000
Cons ci ratio: 3.459061e-03	ci left: 3.027785e-01	ci right 3.038280e-01	k: 894744	n:2950000
KS ci ratio: 1.022509e-01	ci left: 4.724996e-04	ci right 5.237434e-04	k: 1468	n:2950000
HIST2H2BE   2950000 perm   3841 sec   (768 perm/sec)   p_kst 4.976271e-04   p_cons 3.033031e-01   p_joint 4.976271e-04

Joint ci ratio: 1.020773e-01	ci left: 4.725494e-04	ci right 5.237063e-04	k: 1473	n:2960000
Cons ci ratio: 3.453266e-03	ci left: 3.027730e-01	ci right 3.038207e-01	k: 897758	n:2960000
KS ci ratio: 1.020773e-01	ci left: 4.725494e-04	ci right 5.237063e-04	k: 1473	n:2960000
HIST2H2BE   2960000 perm   3866 sec   (766 perm/sec)   p_kst 4.976351e-04   p_cons 3.032966e-01   p_joint 4.976351e-04

Joint ci ratio: 1.018013e-01	ci left: 4.735832e-04	ci right 5.247052e-04	k: 1481	n:2970000
Cons ci ratio: 3.447552e-03	ci left: 3.027611e-01	ci right 3.038070e-01	k: 900753	n:2970000
KS ci ratio: 1.018013e-01	ci left: 4.735832e-04	ci right 5.247052e-04	k: 1481	n:2970000
HIST2H2BE   2970000 perm   3891 sec   (763 perm/sec)   p_kst 4.986532e-04   p_cons 3.032838e-01   p_joint 4.986532e-04

Joint ci ratio: 1.015959e-01	ci left: 4.739562e-04	ci right 5.250091e-04	k: 1487	n:2980000
Cons ci ratio: 3.441735e-03	ci left: 3.027654e-01	ci right 3.038095e-01	k: 903796	n:2980000
KS ci ratio: 1.015959e-01	ci left: 4.739562e-04	ci right 5.250091e-04	k: 1487	n:2980000
HIST2H2BE   2980000 perm   3915 sec   (761 perm/sec)   p_kst 4.989933e-04   p_cons 3.032872e-01   p_joint 4.989933e-04

Joint ci ratio: 1.014596e-01	ci left: 4.736749e-04	ci right 5.246250e-04	k: 1491	n:2990000
Cons ci ratio: 3.435773e-03	ci left: 3.027910e-01	ci right 3.038334e-01	k: 906903	n:2990000
KS ci ratio: 1.014596e-01	ci left: 4.736749e-04	ci right 5.246250e-04	k: 1491	n:2990000
HIST2H2BE   2990000 perm   3939 sec   (759 perm/sec)   p_kst 4.986622e-04   p_cons 3.033120e-01   p_joint 4.986622e-04

Joint ci ratio: 1.013578e-01	ci left: 4.730706e-04	ci right 5.239016e-04	k: 1494	n:3000000
Cons ci ratio: 3.429939e-03	ci left: 3.028045e-01	ci right 3.038452e-01	k: 909974	n:3000000
KS ci ratio: 1.013578e-01	ci left: 4.730706e-04	ci right 5.239016e-04	k: 1494	n:3000000
HIST2H2BE   3000000 perm   3963 sec   (757 perm/sec)   p_kst 4.980000e-04   p_cons 3.033247e-01   p_joint 4.980000e-04

Joint ci ratio: 1.012563e-01	ci left: 4.724704e-04	ci right 5.231830e-04	k: 1497	n:3010000
Cons ci ratio: 3.424453e-03	ci left: 3.027787e-01	ci right 3.038177e-01	k: 912927	n:3010000
KS ci ratio: 1.012563e-01	ci left: 4.724704e-04	ci right 5.231830e-04	k: 1497	n:3010000
HIST2H2BE   3010000 perm   3988 sec   (755 perm/sec)   p_kst 4.973422e-04   p_cons 3.032980e-01   p_joint 4.973422e-04

Joint ci ratio: 1.011214e-01	ci left: 4.721969e-04	ci right 5.228086e-04	k: 1501	n:3020000
Cons ci ratio: 3.418714e-03	ci left: 3.027875e-01	ci right 3.038248e-01	k: 915984	n:3020000
KS ci ratio: 1.011214e-01	ci left: 4.721969e-04	ci right 5.228086e-04	k: 1501	n:3020000
HIST2H2BE   3020000 perm   4013 sec   (752 perm/sec)   p_kst 4.970199e-04   p_cons 3.033060e-01   p_joint 4.970199e-04

Joint ci ratio: 1.010542e-01	ci left: 4.712819e-04	ci right 5.217599e-04	k: 1503	n:3030000
Cons ci ratio: 3.412837e-03	ci left: 3.028171e-01	ci right 3.038526e-01	k: 919104	n:3030000
KS ci ratio: 1.010542e-01	ci left: 4.712819e-04	ci right 5.217599e-04	k: 1503	n:3030000
HIST2H2BE   3030000 perm   4038 sec   (750 perm/sec)   p_kst 4.960396e-04   p_cons 3.033347e-01   p_joint 4.960396e-04

Joint ci ratio: 1.009201e-01	ci left: 4.710141e-04	ci right 5.213926e-04	k: 1507	n:3040000
Cons ci ratio: 3.407148e-03	ci left: 3.028267e-01	ci right 3.038605e-01	k: 922164	n:3040000
KS ci ratio: 1.009201e-01	ci left: 4.710141e-04	ci right 5.213926e-04	k: 1507	n:3040000
HIST2H2BE   3040000 perm   4063 sec   (748 perm/sec)   p_kst 4.957237e-04   p_cons 3.033434e-01   p_joint 4.957237e-04

Joint ci ratio: 1.007532e-01	ci left: 4.710678e-04	ci right 5.213638e-04	k: 1512	n:3050000
Cons ci ratio: 3.401454e-03	ci left: 3.028405e-01	ci right 3.038727e-01	k: 925237	n:3050000
KS ci ratio: 1.007532e-01	ci left: 4.710678e-04	ci right 5.213638e-04	k: 1512	n:3050000
HIST2H2BE   3050000 perm   4088 sec   (746 perm/sec)   p_kst 4.957377e-04   p_cons 3.033564e-01   p_joint 4.957377e-04

Joint ci ratio: 1.005209e-01	ci left: 4.717584e-04	ci right 5.220051e-04	k: 1519	n:3060000
Cons ci ratio: 3.396013e-03	ci left: 3.028261e-01	ci right 3.038566e-01	k: 928224	n:3060000
KS ci ratio: 1.005209e-01	ci left: 4.717584e-04	ci right 5.220051e-04	k: 1519	n:3060000
HIST2H2BE   3060000 perm   4113 sec   (744 perm/sec)   p_kst 4.964052e-04   p_cons 3.033412e-01   p_joint 4.964052e-04

Joint ci ratio: 1.003560e-01	ci left: 4.718095e-04	ci right 5.219744e-04	k: 1524	n:3070000
Cons ci ratio: 3.390474e-03	ci left: 3.028275e-01	ci right 3.038563e-01	k: 931259	n:3070000
KS ci ratio: 1.003560e-01	ci left: 4.718095e-04	ci right 5.219744e-04	k: 1524	n:3070000
HIST2H2BE   3070000 perm   4138 sec   (742 perm/sec)   p_kst 4.964169e-04   p_cons 3.033417e-01   p_joint 4.964169e-04

Joint ci ratio: 1.001591e-01	ci left: 4.721769e-04	ci right 5.222765e-04	k: 1530	n:3080000
Cons ci ratio: 3.384909e-03	ci left: 3.028353e-01	ci right 3.038624e-01	k: 934314	n:3080000
KS ci ratio: 1.001591e-01	ci left: 4.721769e-04	ci right 5.222765e-04	k: 1530	n:3080000
HIST2H2BE   3080000 perm   4162 sec   (740 perm/sec)   p_kst 4.967532e-04   p_cons 3.033487e-01   p_joint 4.967532e-04

Joint ci ratio: 1.000285e-01	ci left: 4.719109e-04	ci right 5.219132e-04	k: 1534	n:3090000
Cons ci ratio: 3.379538e-03	ci left: 3.028224e-01	ci right 3.038479e-01	k: 937305	n:3090000
KS ci ratio: 1.000285e-01	ci left: 4.719109e-04	ci right 5.219132e-04	k: 1534	n:3090000
HIST2H2BE   3090000 perm   4187 sec   (738 perm/sec)   p_kst 4.964401e-04   p_cons 3.033350e-01   p_joint 4.964401e-04

Joint ci ratio: 9.989847e-02	ci left: 4.716466e-04	ci right 5.215522e-04	k: 1538	n:3100000
Cons ci ratio: 3.374104e-03	ci left: 3.028206e-01	ci right 3.038443e-01	k: 940330	n:3100000
KS ci ratio: 9.989847e-02	ci left: 4.716466e-04	ci right 5.215522e-04	k: 1538	n:3100000
HIST2H2BE   3100000 perm   4212 sec   (736 perm/sec)   p_kst 4.961290e-04   p_cons 3.033323e-01   p_joint 4.961290e-04

Outputting figure to mutsig2_images.part000000000079/HIST2H2BE.3_385_3100000_0.00049613_0.30333_0.00049613.png
                gene_name: HIST2H2BE
               theta_stop: 0.100 
                    nperm: 3100000 
                     p_ks: 0.00050 
        ci_ks_bounds_left: 0.00047 
       ci_ks_bounds_right: 0.00052 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.00050 
     ci_joint_bounds_left: 0.00047 
    ci_joint_bounds_right: 0.00052 

Current progress: 48 percent done.
HIST3H2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.127937e-02	ci left: 4.642721e-01	ci right 4.839430e-01	k: 4741	n:10000
Cons ci ratio: 1.077899e-01	ci left: 1.104696e-01	ci right 1.231546e-01	k: 1167	n:10000
KS ci ratio: 6.361591e-02	ci left: 2.663640e-01	ci right 2.839672e-01	k: 2751	n:10000
HIST3H2A   10000 perm   1 sec   (6946 perm/sec)   p_kst 2.751000e-01   p_cons 1.167000e-01   p_joint 4.741000e-01

Joint ci ratio: 4.618022e-02	ci left: 2.586946e-01	ci right 2.709739e-01	k: 5296	n:20000
Cons ci ratio: 7.574393e-02	ci left: 1.136089e-01	ci right 1.226025e-01	k: 2361	n:20000
KS ci ratio: 4.527850e-02	ci left: 2.663874e-01	ci right 2.787788e-01	k: 5451	n:20000
HIST3H2A   20000 perm   3 sec   (6158 perm/sec)   p_kst 2.725500e-01   p_cons 1.180500e-01   p_joint 2.648000e-01

Outputting figure to mutsig2_images.part000000000079/HIST3H2A.3_397_20000_0.27255_0.11805_0.2648.png
                gene_name: HIST3H2A
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 52 percent done.
HK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.154075e-02	ci left: 9.148185e-01	ci right 9.255352e-01	k: 9203	n:10000
Cons ci ratio: 6.666854e-02	ci left: 2.482593e-01	ci right 2.654825e-01	k: 2568	n:10000
KS ci ratio: 2.897138e-02	ci left: 6.372398e-01	ci right 6.560747e-01	k: 6467	n:10000
HK1   10000 perm   2 sec   (5974 perm/sec)   p_kst 6.467000e-01   p_cons 2.568000e-01   p_joint 9.203000e-01

Outputting figure to mutsig2_images.part000000000079/HK1.3_3004_10000_0.6467_0.2568_0.9203.png
                gene_name: HK1
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.93 

Current progress: 55 percent done.
HMGB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.452651e-02	ci left: 8.727542e-01	ci right 8.856240e-01	k: 8793	n:10000
Cons ci ratio: 3.127486e-02	ci left: 6.013635e-01	ci right 6.205718e-01	k: 6110	n:10000
KS ci ratio: 3.269431e-02	ci left: 5.799842e-01	ci right 5.993635e-01	k: 5897	n:10000
HMGB4   10000 perm   2 sec   (6663 perm/sec)   p_kst 5.897000e-01   p_cons 6.110000e-01   p_joint 8.793000e-01

Outputting figure to mutsig2_images.part000000000079/HMGB4.3_565_10000_0.5897_0.611_0.8793.png
                gene_name: HMGB4
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.89 

Current progress: 58 percent done.
HMGCS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.894111e-02	ci left: 1.899330e-01	ci right 2.056434e-01	k: 1977	n:10000
Cons ci ratio: 8.765387e-04	ci left: 9.989762e-01	ci right 9.998910e-01	k: 9996	n:10000
KS ci ratio: 1.191234e-01	ci left: 9.185115e-02	ci right 1.035844e-01	k: 976	n:10000
HMGCS2   10000 perm   2 sec   (6265 perm/sec)   p_kst 9.760000e-02   p_cons 9.996000e-01   p_joint 1.977000e-01

Joint ci ratio: 6.214010e-02	ci left: 1.607684e-01	ci right 1.711289e-01	k: 3318	n:20000
Cons ci ratio: 5.544133e-04	ci left: 9.992790e-01	ci right 9.998593e-01	k: 19993	n:20000
KS ci ratio: 8.525382e-02	ci left: 9.150982e-02	ci right 9.970819e-02	k: 1911	n:20000
HMGCS2   20000 perm   4 sec   (5592 perm/sec)   p_kst 9.555000e-02   p_cons 9.996500e-01   p_joint 1.659000e-01

Outputting figure to mutsig2_images.part000000000079/HMGCS2.3_1563_20000_0.09555_0.99965_0.1659.png
                gene_name: HMGCS2
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.096 
        ci_ks_bounds_left: 0.092 
       ci_ks_bounds_right: 0.100 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 61 percent done.
HIST1H2BK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.240382e-01	ci left: 8.514113e-02	ci right 9.649855e-02	k: 907	n:10000
Cons ci ratio: 4.449503e-02	ci left: 4.271481e-01	ci right 4.466887e-01	k: 4369	n:10000
KS ci ratio: 2.478600e-01	ci left: 2.137124e-02	ci right 2.751008e-02	k: 243	n:10000
HIST1H2BK   10000 perm   1 sec   (7160 perm/sec)   p_kst 2.430000e-02   p_cons 4.369000e-01   p_joint 9.070000e-02

Joint ci ratio: 9.204076e-02	ci left: 7.931024e-02	ci right 8.701145e-02	k: 1662	n:20000
Cons ci ratio: 3.158408e-02	ci left: 4.281641e-01	ci right 4.419548e-01	k: 8701	n:20000
KS ci ratio: 1.780934e-01	ci left: 2.154068e-02	ci right 2.579935e-02	k: 472	n:20000
HIST1H2BK   20000 perm   3 sec   (6341 perm/sec)   p_kst 2.360000e-02   p_cons 4.350500e-01   p_joint 8.310000e-02

Joint ci ratio: 7.584167e-02	ci left: 7.865721e-02	ci right 8.489074e-02	k: 2452	n:30000
Cons ci ratio: 2.587930e-02	ci left: 4.277159e-01	ci right 4.389636e-01	k: 13000	n:30000
KS ci ratio: 1.454663e-01	ci left: 2.191185e-02	ci right 2.538125e-02	k: 708	n:30000
HIST1H2BK   30000 perm   5 sec   (6020 perm/sec)   p_kst 2.360000e-02   p_cons 4.333333e-01   p_joint 8.173333e-02

Joint ci ratio: 6.644358e-02	ci left: 7.738405e-02	ci right 8.272710e-02	k: 3201	n:40000
Cons ci ratio: 2.247456e-02	ci left: 4.271132e-01	ci right 4.368466e-01	k: 17279	n:40000
KS ci ratio: 1.260691e-01	ci left: 2.211033e-02	ci right 2.510938e-02	k: 943	n:40000
HIST1H2BK   40000 perm   7 sec   (5813 perm/sec)   p_kst 2.357500e-02   p_cons 4.319750e-01   p_joint 8.002500e-02

Joint ci ratio: 5.948159e-02	ci left: 7.753785e-02	ci right 8.231106e-02	k: 3995	n:50000
Cons ci ratio: 2.003969e-02	ci left: 4.291503e-01	ci right 4.378574e-01	k: 21675	n:50000
KS ci ratio: 1.129562e-01	ci left: 2.218992e-02	ci right 2.486580e-02	k: 1175	n:50000
HIST1H2BK   50000 perm   9 sec   (5641 perm/sec)   p_kst 2.350000e-02   p_cons 4.335000e-01   p_joint 7.990000e-02

Joint ci ratio: 5.422660e-02	ci left: 7.794002e-02	ci right 8.230070e-02	k: 4806	n:60000
Cons ci ratio: 1.838343e-02	ci left: 4.271325e-01	ci right 4.350742e-01	k: 25866	n:60000
KS ci ratio: 1.030473e-01	ci left: 2.233514e-02	ci right 2.477791e-02	k: 1412	n:60000
HIST1H2BK   60000 perm   11 sec   (5490 perm/sec)   p_kst 2.353333e-02   p_cons 4.311000e-01   p_joint 8.010000e-02

Joint ci ratio: 5.049425e-02	ci left: 7.726628e-02	ci right 8.128296e-02	k: 5548	n:70000
Cons ci ratio: 1.704860e-02	ci left: 4.265995e-01	ci right 4.339492e-01	k: 30119	n:70000
KS ci ratio: 9.586592e-02	ci left: 2.220907e-02	ci right 2.445925e-02	k: 1632	n:70000
HIST1H2BK   70000 perm   13 sec   (5340 perm/sec)   p_kst 2.331429e-02   p_cons 4.302714e-01   p_joint 7.925714e-02

Outputting figure to mutsig2_images.part000000000079/HIST1H2BK.2_385_70000_0.023314_0.43027_0.079257.png
                gene_name: HIST1H2BK
               theta_stop: 0.096 
                    nperm: 70000 
                     p_ks: 0.023 
        ci_ks_bounds_left: 0.022 
       ci_ks_bounds_right: 0.024 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.079 
     ci_joint_bounds_left: 0.077 
    ci_joint_bounds_right: 0.081 

Current progress: 64 percent done.
HIST1H3F
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.673940e-02	ci left: 5.224624e-01	ci right 5.421187e-01	k: 5323	n:10000
KS ci ratio: 5.986431e-02	ci left: 2.910276e-01	ci right 3.090890e-01	k: 3000	n:10000
HIST1H3F   10000 perm   1 sec   (7473 perm/sec)   p_kst 3.000000e-01   p_cons 5.323000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000079/HIST1H3F.2_415_10000_0.3_0.5323_1.png
                gene_name: HIST1H3F
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
HIST1H4C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.278220e-02	ci left: 5.786800e-01	ci right 5.980685e-01	k: 5884	n:10000
KS ci ratio: 3.032241e-02	ci left: 6.160289e-01	ci right 6.350979e-01	k: 6256	n:10000
HIST1H4C   10000 perm   1 sec   (7543 perm/sec)   p_kst 6.256000e-01   p_cons 5.884000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000079/HIST1H4C.2_316_10000_0.6256_0.5884_1.png
                gene_name: HIST1H4C
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
HIST1H4I
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.065035e-01	ci left: 1.129108e-01	ci right 1.257119e-01	k: 1192	n:10000
Cons ci ratio: 3.176376e-02	ci left: 5.939338e-01	ci right 6.132058e-01	k: 6036	n:10000
KS ci ratio: 1.065035e-01	ci left: 1.129108e-01	ci right 1.257119e-01	k: 1192	n:10000
HIST1H4I   10000 perm   1 sec   (7519 perm/sec)   p_kst 1.192000e-01   p_cons 6.036000e-01   p_joint 1.192000e-01

Joint ci ratio: 7.522128e-02	ci left: 1.150350e-01	ci right 1.240759e-01	k: 2390	n:20000
Cons ci ratio: 2.256732e-02	ci left: 5.945250e-01	ci right 6.081455e-01	k: 12027	n:20000
KS ci ratio: 7.522128e-02	ci left: 1.150350e-01	ci right 1.240759e-01	k: 2390	n:20000
HIST1H4I   20000 perm   3 sec   (6584 perm/sec)   p_kst 1.195000e-01   p_cons 6.013500e-01   p_joint 1.195000e-01

Outputting figure to mutsig2_images.part000000000079/HIST1H4I.2_316_20000_0.1195_0.60135_0.1195.png
                gene_name: HIST1H4I
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 73 percent done.
HIST2H2AB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.208266e-02	ci left: 7.505939e-01	ci right 7.674550e-01	k: 7591	n:10000
Cons ci ratio: 4.695702e-02	ci left: 4.009353e-01	ci right 4.203168e-01	k: 4106	n:10000
KS ci ratio: 7.250119e-02	ci left: 2.179321e-01	ci right 2.344277e-01	k: 2261	n:10000
HIST2H2AB   10000 perm   1 sec   (7431 perm/sec)   p_kst 2.261000e-01   p_cons 4.106000e-01   p_joint 7.591000e-01

Outputting figure to mutsig2_images.part000000000079/HIST2H2AB.2_397_10000_0.2261_0.4106_0.7591.png
                gene_name: HIST2H2AB
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 76 percent done.
HIST2H2AC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.023559e-02	ci left: 7.814775e-01	ci right 7.975535e-01	k: 7896	n:10000
KS ci ratio: 4.625609e-02	ci left: 4.082083e-01	ci right 4.276396e-01	k: 4179	n:10000
HIST2H2AC   10000 perm   1 sec   (7184 perm/sec)   p_kst 4.179000e-01   p_cons 7.896000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000079/HIST2H2AC.2_394_10000_0.4179_0.7896_1.png
                gene_name: HIST2H2AC
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
HKR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.895237e-02	ci left: 6.375415e-01	ci right 6.563728e-01	k: 6470	n:10000
KS ci ratio: 1.811802e-02	ci left: 8.163920e-01	ci right 8.314188e-01	k: 8240	n:10000
HKR1   10000 perm   2 sec   (6284 perm/sec)   p_kst 8.240000e-01   p_cons 6.470000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000079/HKR1.2_1996_10000_0.824_0.647_1.png
                gene_name: HKR1
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
HLA-DPA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.081773e-02	ci left: 9.241000e-01	ci right 9.342483e-01	k: 9293	n:10000
Cons ci ratio: 1.044305e-02	ci left: 9.287493e-01	ci right 9.385962e-01	k: 9338	n:10000
KS ci ratio: 6.488330e-02	ci left: 2.586449e-01	ci right 2.760908e-01	k: 2673	n:10000
HLA-DPA1   10000 perm   1 sec   (6892 perm/sec)   p_kst 2.673000e-01   p_cons 9.338000e-01   p_joint 9.293000e-01

Outputting figure to mutsig2_images.part000000000079/HLA-DPA1.2_799_10000_0.2673_0.9338_0.9293.png
                gene_name: HLA-DPA1
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 85 percent done.
HLA-DRB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.353899e-02	ci left: 5.675467e-01	ci right 5.870083e-01	k: 5773	n:10000
Cons ci ratio: 2.536816e-02	ci left: 6.957512e-01	ci right 7.137293e-01	k: 7048	n:10000
KS ci ratio: 5.300083e-02	ci left: 3.441241e-01	ci right 3.629613e-01	k: 3535	n:10000
HLA-DRB1   10000 perm   1 sec   (6925 perm/sec)   p_kst 3.535000e-01   p_cons 7.048000e-01   p_joint 5.773000e-01

Outputting figure to mutsig2_images.part000000000079/HLA-DRB1.2_825_10000_0.3535_0.7048_0.5773.png
                gene_name: HLA-DRB1
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 88 percent done.
HLA-DRB5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.849127e-02	ci left: 6.448846e-01	ci right 6.636255e-01	k: 6543	n:10000
KS ci ratio: 2.423247e-02	ci left: 7.146195e-01	ci right 7.322502e-01	k: 7235	n:10000
HLA-DRB5   10000 perm   1 sec   (7194 perm/sec)   p_kst 7.235000e-01   p_cons 6.543000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000079/HLA-DRB5.2_825_10000_0.7235_0.6543_1.png
                gene_name: HLA-DRB5
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
HLA-G
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.254388e-01	ci left: 1.197339e-02	ci right 1.671572e-02	k: 142	n:10000
Cons ci ratio: 1.008262e-01	ci left: 1.246409e-01	ci right 1.379747e-01	k: 1312	n:10000
KS ci ratio: 6.812237e-01	ci left: 2.189796e-03	ci right 4.514469e-03	k: 32	n:10000
HLA-G   10000 perm   2 sec   (6643 perm/sec)   p_kst 3.200000e-03   p_cons 1.312000e-01   p_joint 1.420000e-02

Joint ci ratio: 2.640385e-01	ci left: 9.460703e-03	ci right 1.238410e-02	k: 217	n:20000
Cons ci ratio: 6.760763e-02	ci left: 1.390134e-01	ci right 1.487904e-01	k: 2877	n:20000
KS ci ratio: 5.184634e-01	ci left: 2.115762e-03	ci right 3.634512e-03	k: 56	n:20000
HLA-G   20000 perm   3 sec   (5885 perm/sec)   p_kst 2.800000e-03   p_cons 1.438500e-01   p_joint 1.085000e-02

Joint ci ratio: 1.648458e-01	ci left: 1.697330e-02	ci right 2.005429e-02	k: 554	n:30000
Cons ci ratio: 5.861662e-02	ci left: 1.259175e-01	ci right 1.335544e-01	k: 3891	n:30000
KS ci ratio: 4.196513e-01	ci left: 2.293583e-03	ci right 3.539117e-03	k: 86	n:30000
HLA-G   30000 perm   5 sec   (5601 perm/sec)   p_kst 2.866667e-03   p_cons 1.297000e-01   p_joint 1.846667e-02

Joint ci ratio: 1.797485e-01	ci left: 1.069316e-02	ci right 1.282861e-02	k: 469	n:40000
Cons ci ratio: 5.050302e-02	ci left: 1.275843e-01	ci right 1.342194e-01	k: 5235	n:40000
KS ci ratio: 3.573038e-01	ci left: 2.465140e-03	ci right 3.558989e-03	k: 119	n:40000
HLA-G   40000 perm   7 sec   (5404 perm/sec)   p_kst 2.975000e-03   p_cons 1.308750e-01   p_joint 1.172500e-02

Joint ci ratio: 8.561491e-02	ci left: 3.851459e-02	ci right 4.197904e-02	k: 2011	n:50000
Cons ci ratio: 4.486816e-02	ci left: 1.294605e-01	ci right 1.354223e-01	k: 6621	n:50000
KS ci ratio: 3.206569e-01	ci left: 2.502884e-03	ci right 3.476241e-03	k: 148	n:50000
HLA-G   50000 perm   10 sec   (5248 perm/sec)   p_kst 2.960000e-03   p_cons 1.324200e-01   p_joint 4.022000e-02

Joint ci ratio: 6.231767e-02	ci left: 5.993546e-02	ci right 6.380705e-02	k: 3711	n:60000
Cons ci ratio: 4.082397e-02	ci left: 1.304741e-01	ci right 1.359281e-01	k: 7991	n:60000
KS ci ratio: 2.984660e-01	ci left: 2.439315e-03	ci right 3.309876e-03	k: 171	n:60000
HLA-G   60000 perm   12 sec   (5113 perm/sec)   p_kst 2.850000e-03   p_cons 1.331833e-01   p_joint 6.185000e-02

Joint ci ratio: 5.539657e-02	ci left: 6.490485e-02	ci right 6.861688e-02	k: 4672	n:70000
Cons ci ratio: 3.788950e-02	ci left: 1.301099e-01	ci right 1.351491e-01	k: 9283	n:70000
KS ci ratio: 2.781860e-01	ci left: 2.435440e-03	ci right 3.235228e-03	k: 197	n:70000
HLA-G   70000 perm   14 sec   (4994 perm/sec)   p_kst 2.814286e-03   p_cons 1.326143e-01   p_joint 6.674286e-02

Joint ci ratio: 5.209933e-02	ci left: 6.436312e-02	ci right 6.781842e-02	k: 5286	n:80000
Cons ci ratio: 3.550471e-02	ci left: 1.298724e-01	ci right 1.345793e-01	k: 10577	n:80000
KS ci ratio: 2.633216e-01	ci left: 2.399000e-03	ci right 3.137793e-03	k: 220	n:80000
HLA-G   80000 perm   16 sec   (4883 perm/sec)   p_kst 2.750000e-03   p_cons 1.322125e-01   p_joint 6.607500e-02

Joint ci ratio: 4.740509e-02	ci left: 6.893478e-02	ci right 7.229295e-02	k: 6354	n:90000
Cons ci ratio: 3.354446e-02	ci left: 1.295301e-01	ci right 1.339603e-01	k: 11856	n:90000
KS ci ratio: 2.500971e-01	ci left: 2.381960e-03	ci right 3.072934e-03	k: 244	n:90000
HLA-G   90000 perm   19 sec   (4796 perm/sec)   p_kst 2.711111e-03   p_cons 1.317333e-01   p_joint 7.060000e-02

Joint ci ratio: 4.661705e-02	ci left: 6.449844e-02	ci right 6.758679e-02	k: 6603	n:100000
Cons ci ratio: 3.179729e-02	ci left: 1.298283e-01	ci right 1.340331e-01	k: 13192	n:100000
KS ci ratio: 2.395784e-01	ci left: 2.350267e-03	ci right 2.999115e-03	k: 266	n:100000
HLA-G   100000 perm   21 sec   (4711 perm/sec)   p_kst 2.660000e-03   p_cons 1.319200e-01   p_joint 6.603000e-02

Joint ci ratio: 4.431843e-02	ci left: 6.492655e-02	ci right 6.787818e-02	k: 7303	n:110000
Cons ci ratio: 3.028305e-02	ci left: 1.301855e-01	ci right 1.341975e-01	k: 14540	n:110000
KS ci ratio: 2.279240e-01	ci left: 2.376256e-03	ci right 2.995882e-03	k: 294	n:110000
HLA-G   110000 perm   24 sec   (4631 perm/sec)   p_kst 2.672727e-03   p_cons 1.321818e-01   p_joint 6.639091e-02

Joint ci ratio: 4.235771e-02	ci left: 6.520389e-02	ci right 6.803376e-02	k: 7993	n:120000
Cons ci ratio: 2.894643e-02	ci left: 1.306445e-01	ci right 1.344900e-01	k: 15907	n:120000
KS ci ratio: 2.171469e-01	ci left: 2.414312e-03	ci right 3.010125e-03	k: 324	n:120000
HLA-G   120000 perm   26 sec   (4550 perm/sec)   p_kst 2.700000e-03   p_cons 1.325583e-01   p_joint 6.660833e-02

Joint ci ratio: 4.205774e-02	ci left: 6.131957e-02	ci right 6.396152e-02	k: 8142	n:130000
Cons ci ratio: 2.775764e-02	ci left: 1.311584e-01	ci right 1.348579e-01	k: 17290	n:130000
KS ci ratio: 2.089507e-01	ci left: 2.417927e-03	ci right 2.989230e-03	k: 350	n:130000
HLA-G   130000 perm   29 sec   (4463 perm/sec)   p_kst 2.692308e-03   p_cons 1.330000e-01   p_joint 6.263077e-02

Joint ci ratio: 4.382547e-02	ci left: 5.287123e-02	ci right 5.524729e-02	k: 7567	n:140000
Cons ci ratio: 2.531487e-02	ci left: 1.443744e-01	ci right 1.480831e-01	k: 20471	n:140000
KS ci ratio: 2.026986e-01	ci left: 2.394260e-03	ci right 2.940948e-03	k: 372	n:140000
HLA-G   140000 perm   32 sec   (4390 perm/sec)   p_kst 2.657143e-03   p_cons 1.462214e-01   p_joint 5.405000e-02

Joint ci ratio: 3.948367e-02	ci left: 6.044128e-02	ci right 6.288236e-02	k: 9248	n:150000
Cons ci ratio: 2.447825e-02	ci left: 1.442166e-01	ci right 1.477971e-01	k: 21900	n:150000
KS ci ratio: 1.952490e-01	ci left: 2.418350e-03	ci right 2.947832e-03	k: 401	n:150000
HLA-G   150000 perm   35 sec   (4317 perm/sec)   p_kst 2.673333e-03   p_cons 1.460000e-01   p_joint 6.165333e-02

Joint ci ratio: 4.097032e-02	ci left: 5.300891e-02	ci right 5.523228e-02	k: 8658	n:160000
Cons ci ratio: 2.368617e-02	ci left: 1.444286e-01	ci right 1.478967e-01	k: 23385	n:160000
KS ci ratio: 1.879101e-01	ci left: 2.457617e-03	ci right 2.973165e-03	k: 433	n:160000
HLA-G   160000 perm   38 sec   (4244 perm/sec)   p_kst 2.706250e-03   p_cons 1.461562e-01   p_joint 5.411250e-02

Joint ci ratio: 3.708319e-02	ci left: 6.053162e-02	ci right 6.282453e-02	k: 10484	n:170000
Cons ci ratio: 2.296036e-02	ci left: 1.446817e-01	ci right 1.480480e-01	k: 24881	n:170000
KS ci ratio: 1.823244e-01	ci left: 2.464517e-03	ci right 2.964447e-03	k: 460	n:170000
HLA-G   170000 perm   41 sec   (4156 perm/sec)   p_kst 2.705882e-03   p_cons 1.463588e-01   p_joint 6.167059e-02

Joint ci ratio: 3.477331e-02	ci left: 6.479662e-02	ci right 6.709516e-02	k: 11869	n:180000
Cons ci ratio: 2.231627e-02	ci left: 1.446980e-01	ci right 1.479690e-01	k: 26339	n:180000
KS ci ratio: 1.761265e-01	ci left: 2.502714e-03	ci right 2.991298e-03	k: 493	n:180000
HLA-G   180000 perm   44 sec   (4092 perm/sec)   p_kst 2.738889e-03   p_cons 1.463278e-01   p_joint 6.593889e-02

Joint ci ratio: 3.386097e-02	ci left: 6.477273e-02	ci right 6.700896e-02	k: 12518	n:190000
Cons ci ratio: 2.172350e-02	ci left: 1.447137e-01	ci right 1.478971e-01	k: 27797	n:190000
KS ci ratio: 1.715022e-01	ci left: 2.506916e-03	ci right 2.982141e-03	k: 520	n:190000
HLA-G   190000 perm   47 sec   (4022 perm/sec)   p_kst 2.736842e-03   p_cons 1.463000e-01   p_joint 6.588421e-02

Joint ci ratio: 3.293395e-02	ci left: 6.505956e-02	ci right 6.724304e-02	k: 13229	n:200000
Cons ci ratio: 2.114597e-02	ci left: 1.450774e-01	ci right 1.481829e-01	k: 29325	n:200000
KS ci ratio: 1.683054e-01	ci left: 2.477315e-03	ci right 2.937287e-03	k: 540	n:200000
HLA-G   200000 perm   51 sec   (3960 perm/sec)   p_kst 2.700000e-03   p_cons 1.466250e-01   p_joint 6.614500e-02

Joint ci ratio: 3.215078e-02	ci left: 6.504569e-02	ci right 6.717583e-02	k: 13882	n:210000
Cons ci ratio: 2.064551e-02	ci left: 1.450044e-01	ci right 1.480340e-01	k: 30768	n:210000
KS ci ratio: 1.636797e-01	ci left: 2.500837e-03	ci right 2.951158e-03	k: 571	n:210000
HLA-G   210000 perm   54 sec   (3898 perm/sec)   p_kst 2.719048e-03   p_cons 1.465143e-01   p_joint 6.610476e-02

Joint ci ratio: 3.141516e-02	ci left: 6.505621e-02	ci right 6.713706e-02	k: 14540	n:220000
Cons ci ratio: 2.017678e-02	ci left: 1.449659e-01	ci right 1.479252e-01	k: 32217	n:220000
KS ci ratio: 1.608937e-01	ci left: 2.474377e-03	ci right 2.911617e-03	k: 591	n:220000
HLA-G   220000 perm   57 sec   (3838 perm/sec)   p_kst 2.686364e-03   p_cons 1.464409e-01   p_joint 6.609091e-02

Joint ci ratio: 3.072351e-02	ci left: 6.508359e-02	ci right 6.711867e-02	k: 15202	n:230000
Cons ci ratio: 1.972314e-02	ci left: 1.451264e-01	ci right 1.480216e-01	k: 33711	n:230000
KS ci ratio: 1.579867e-01	ci left: 2.458630e-03	ci right 2.884492e-03	k: 613	n:230000
HLA-G   230000 perm   61 sec   (3781 perm/sec)   p_kst 2.665217e-03   p_cons 1.465696e-01   p_joint 6.609565e-02

Joint ci ratio: 3.007460e-02	ci left: 6.511328e-02	ci right 6.710555e-02	k: 15865	n:240000
Cons ci ratio: 1.930940e-02	ci left: 1.451373e-01	ci right 1.479712e-01	k: 35172	n:240000
KS ci ratio: 1.542619e-01	ci left: 2.476305e-03	ci right 2.894182e-03	k: 643	n:240000
HLA-G   240000 perm   64 sec   (3731 perm/sec)   p_kst 2.679167e-03   p_cons 1.465500e-01   p_joint 6.610417e-02

Joint ci ratio: 2.945560e-02	ci left: 6.518074e-02	ci right 6.713333e-02	k: 16538	n:250000
Cons ci ratio: 1.891671e-02	ci left: 1.451997e-01	ci right 1.479765e-01	k: 36646	n:250000
KS ci ratio: 1.503421e-01	ci left: 2.508074e-03	ci right 2.919590e-03	k: 677	n:250000
HLA-G   250000 perm   68 sec   (3680 perm/sec)   p_kst 2.708000e-03   p_cons 1.465840e-01   p_joint 6.615200e-02

Joint ci ratio: 2.889849e-02	ci left: 6.513644e-02	ci right 6.705017e-02	k: 17183	n:260000
Cons ci ratio: 1.853993e-02	ci left: 1.453536e-01	ci right 1.480774e-01	k: 38145	n:260000
KS ci ratio: 1.470175e-01	ci left: 2.526407e-03	ci right 2.930959e-03	k: 708	n:260000
HLA-G   260000 perm   72 sec   (3629 perm/sec)   p_kst 2.723077e-03   p_cons 1.467115e-01   p_joint 6.608846e-02

Joint ci ratio: 2.835737e-02	ci left: 6.515828e-02	ci right 6.703623e-02	k: 17845	n:270000
Cons ci ratio: 1.819824e-02	ci left: 1.453121e-01	ci right 1.479844e-01	k: 39594	n:270000
KS ci ratio: 1.449888e-01	ci left: 2.504202e-03	ci right 2.899186e-03	k: 728	n:270000
HLA-G   270000 perm   75 sec   (3583 perm/sec)   p_kst 2.696296e-03   p_cons 1.466444e-01   p_joint 6.609259e-02

Joint ci ratio: 2.782302e-02	ci left: 6.527823e-02	ci right 6.712362e-02	k: 18535	n:280000
Cons ci ratio: 1.785999e-02	ci left: 1.454803e-01	ci right 1.481056e-01	k: 41101	n:280000
KS ci ratio: 1.430417e-01	ci left: 2.483619e-03	ci right 2.869646e-03	k: 748	n:280000
HLA-G   280000 perm   79 sec   (3534 perm/sec)   p_kst 2.671429e-03   p_cons 1.467893e-01   p_joint 6.619643e-02

Joint ci ratio: 2.735284e-02	ci left: 6.523260e-02	ci right 6.704504e-02	k: 19179	n:290000
Cons ci ratio: 1.754621e-02	ci left: 1.455481e-01	ci right 1.481279e-01	k: 42582	n:290000
KS ci ratio: 1.405312e-01	ci left: 2.487778e-03	ci right 2.867097e-03	k: 775	n:290000
HLA-G   290000 perm   83 sec   (3486 perm/sec)   p_kst 2.672414e-03   p_cons 1.468345e-01   p_joint 6.613448e-02

Joint ci ratio: 2.691372e-02	ci left: 6.515383e-02	ci right 6.693457e-02	k: 19812	n:300000
Cons ci ratio: 1.724266e-02	ci left: 1.456948e-01	ci right 1.482321e-01	k: 44088	n:300000
KS ci ratio: 1.384078e-01	ci left: 2.482060e-03	ci right 2.854317e-03	k: 799	n:300000
HLA-G   300000 perm   87 sec   (3439 perm/sec)   p_kst 2.663333e-03   p_cons 1.469600e-01   p_joint 6.604000e-02

Joint ci ratio: 2.648329e-02	ci left: 6.513486e-02	ci right 6.688617e-02	k: 20462	n:310000
Cons ci ratio: 1.696569e-02	ci left: 1.456652e-01	ci right 1.481608e-01	k: 45542	n:310000
KS ci ratio: 1.361296e-01	ci left: 2.486100e-03	ci right 2.852328e-03	k: 826	n:310000
HLA-G   310000 perm   91 sec   (3396 perm/sec)   p_kst 2.664516e-03   p_cons 1.469097e-01   p_joint 6.600645e-02

Joint ci ratio: 2.607420e-02	ci left: 6.511107e-02	ci right 6.683430e-02	k: 21110	n:320000
Cons ci ratio: 1.669519e-02	ci left: 1.457343e-01	ci right 1.481909e-01	k: 47027	n:320000
KS ci ratio: 1.335688e-01	ci left: 2.505037e-03	ci right 2.866563e-03	k: 858	n:320000
HLA-G   320000 perm   95 sec   (3353 perm/sec)   p_kst 2.681250e-03   p_cons 1.469594e-01   p_joint 6.596875e-02

Joint ci ratio: 2.567719e-02	ci left: 6.511905e-02	ci right 6.681586e-02	k: 21768	n:330000
Cons ci ratio: 1.643644e-02	ci left: 1.458115e-01	ci right 1.482310e-01	k: 48516	n:330000
KS ci ratio: 1.315924e-01	ci left: 2.505302e-03	ci right 2.861097e-03	k: 884	n:330000
HLA-G   330000 perm   100 sec   (3309 perm/sec)   p_kst 2.678788e-03   p_cons 1.470182e-01   p_joint 6.596364e-02

Joint ci ratio: 2.555740e-02	ci left: 6.388707e-02	ci right 6.554389e-02	k: 22002	n:340000
Cons ci ratio: 1.619316e-02	ci left: 1.458259e-01	ci right 1.482095e-01	k: 49985	n:340000
KS ci ratio: 1.299158e-01	ci left: 2.497050e-03	ci right 2.846806e-03	k: 907	n:340000
HLA-G   340000 perm   104 sec   (3266 perm/sec)   p_kst 2.667647e-03   p_cons 1.470147e-01   p_joint 6.471176e-02

Joint ci ratio: 2.518617e-02	ci left: 6.391561e-02	ci right 6.554875e-02	k: 22655	n:350000
Cons ci ratio: 1.595727e-02	ci left: 1.458882e-01	ci right 1.482377e-01	k: 51471	n:350000
KS ci ratio: 1.282326e-01	ci left: 2.492062e-03	ci right 2.836254e-03	k: 931	n:350000
HLA-G   350000 perm   108 sec   (3227 perm/sec)   p_kst 2.660000e-03   p_cons 1.470600e-01   p_joint 6.472857e-02

Joint ci ratio: 2.483180e-02	ci left: 6.393721e-02	ci right 6.554758e-02	k: 23306	n:360000
Cons ci ratio: 1.573123e-02	ci left: 1.459499e-01	ci right 1.482669e-01	k: 52958	n:360000
KS ci ratio: 1.264145e-01	ci left: 2.495450e-03	ci right 2.834856e-03	k: 958	n:360000
HLA-G   360000 perm   113 sec   (3187 perm/sec)   p_kst 2.661111e-03   p_cons 1.471056e-01   p_joint 6.473889e-02

Joint ci ratio: 2.447669e-02	ci left: 6.403304e-02	ci right 6.562244e-02	k: 23985	n:370000
Cons ci ratio: 1.552406e-02	ci left: 1.458550e-01	ci right 1.481397e-01	k: 54388	n:370000
KS ci ratio: 1.247986e-01	ci left: 2.493450e-03	ci right 2.827928e-03	k: 983	n:370000
HLA-G   370000 perm   117 sec   (3150 perm/sec)   p_kst 2.656757e-03   p_cons 1.469946e-01   p_joint 6.482432e-02

Joint ci ratio: 2.413429e-02	ci left: 6.413444e-02	ci right 6.570378e-02	k: 24668	n:380000
Cons ci ratio: 1.530591e-02	ci left: 1.460749e-01	ci right 1.483305e-01	k: 55936	n:380000
KS ci ratio: 1.234272e-01	ci left: 2.483929e-03	ci right 2.813202e-03	k: 1005	n:380000
HLA-G   380000 perm   122 sec   (3115 perm/sec)   p_kst 2.644737e-03   p_cons 1.472000e-01   p_joint 6.491579e-02

Joint ci ratio: 2.383303e-02	ci left: 6.409310e-02	ci right 6.564158e-02	k: 25297	n:390000
Cons ci ratio: 1.511335e-02	ci left: 1.460076e-01	ci right 1.482336e-01	k: 57376	n:390000
KS ci ratio: 1.216265e-01	ci left: 2.494805e-03	ci right 2.820347e-03	k: 1035	n:390000
HLA-G   390000 perm   127 sec   (3082 perm/sec)   p_kst 2.653846e-03   p_cons 1.471179e-01   p_joint 6.486410e-02

Joint ci ratio: 2.396155e-02	ci left: 6.196060e-02	ci right 6.346574e-02	k: 25084	n:400000
Cons ci ratio: 1.492133e-02	ci left: 1.460535e-01	ci right 1.482516e-01	k: 58860	n:400000
KS ci ratio: 1.202990e-01	ci left: 2.488194e-03	ci right 2.809078e-03	k: 1058	n:400000
HLA-G   400000 perm   131 sec   (3047 perm/sec)   p_kst 2.645000e-03   p_cons 1.471500e-01   p_joint 6.271000e-02

Joint ci ratio: 2.365337e-02	ci left: 6.203987e-02	ci right 6.352729e-02	k: 25740	n:410000
Cons ci ratio: 1.473946e-02	ci left: 1.460463e-01	ci right 1.482173e-01	k: 60323	n:410000
KS ci ratio: 1.188489e-01	ci left: 2.489025e-03	ci right 2.805874e-03	k: 1084	n:410000
HLA-G   410000 perm   136 sec   (3014 perm/sec)   p_kst 2.643902e-03   p_cons 1.471293e-01   p_joint 6.278049e-02

Joint ci ratio: 2.337615e-02	ci left: 6.201840e-02	ci right 6.348764e-02	k: 26355	n:420000
Cons ci ratio: 1.456643e-02	ci left: 1.459992e-01	ci right 1.481438e-01	k: 61769	n:420000
KS ci ratio: 1.176627e-01	ci left: 2.480593e-03	ci right 2.792998e-03	k: 1106	n:420000
HLA-G   420000 perm   141 sec   (2979 perm/sec)   p_kst 2.633333e-03   p_cons 1.470690e-01   p_joint 6.275000e-02

Joint ci ratio: 2.310572e-02	ci left: 6.201190e-02	ci right 6.346377e-02	k: 26976	n:430000
Cons ci ratio: 1.438576e-02	ci left: 1.461909e-01	ci right 1.483115e-01	k: 63317	n:430000
KS ci ratio: 1.165112e-01	ci left: 2.472568e-03	ci right 2.780706e-03	k: 1128	n:430000
HLA-G   430000 perm   146 sec   (2946 perm/sec)   p_kst 2.623256e-03   p_cons 1.472488e-01   p_joint 6.273488e-02

Joint ci ratio: 2.285904e-02	ci left: 6.193119e-02	ci right 6.336548e-02	k: 27564	n:440000
Cons ci ratio: 1.422321e-02	ci left: 1.461702e-01	ci right 1.482663e-01	k: 64775	n:440000
KS ci ratio: 1.156450e-01	ci left: 2.453887e-03	ci right 2.757268e-03	k: 1145	n:440000
HLA-G   440000 perm   151 sec   (2912 perm/sec)   p_kst 2.602273e-03   p_cons 1.472159e-01   p_joint 6.264545e-02

Joint ci ratio: 2.260768e-02	ci left: 6.191825e-02	ci right 6.333627e-02	k: 28181	n:450000
Cons ci ratio: 1.407016e-02	ci left: 1.460773e-01	ci right 1.481494e-01	k: 66200	n:450000
KS ci ratio: 1.140627e-01	ci left: 2.468425e-03	ci right 2.769147e-03	k: 1177	n:450000
HLA-G   450000 perm   156 sec   (2876 perm/sec)   p_kst 2.615556e-03   p_cons 1.471111e-01   p_joint 6.262444e-02

Joint ci ratio: 2.235036e-02	ci left: 6.197949e-02	ci right 6.338255e-02	k: 28832	n:460000
Cons ci ratio: 1.391002e-02	ci left: 1.462033e-01	ci right 1.482533e-01	k: 67724	n:460000
KS ci ratio: 1.132022e-01	ci left: 2.452781e-03	ci right 2.749192e-03	k: 1195	n:460000
HLA-G   460000 perm   162 sec   (2845 perm/sec)   p_kst 2.597826e-03   p_cons 1.472261e-01   p_joint 6.267826e-02

Joint ci ratio: 2.210924e-02	ci left: 6.199799e-02	ci right 6.338613e-02	k: 29464	n:470000
Cons ci ratio: 1.376302e-02	ci left: 1.461818e-01	ci right 1.482098e-01	k: 69181	n:470000
KS ci ratio: 1.119455e-01	ci left: 2.456424e-03	ci right 2.749762e-03	k: 1222	n:470000
HLA-G   470000 perm   167 sec   (2814 perm/sec)   p_kst 2.600000e-03   p_cons 1.471936e-01   p_joint 6.268936e-02

Joint ci ratio: 2.220180e-02	ci left: 6.030797e-02	ci right 6.166400e-02	k: 29272	n:480000
Cons ci ratio: 1.361359e-02	ci left: 1.462902e-01	ci right 1.482974e-01	k: 70700	n:480000
KS ci ratio: 1.109078e-01	ci left: 2.451829e-03	ci right 2.741727e-03	k: 1245	n:480000
HLA-G   480000 perm   172 sec   (2784 perm/sec)   p_kst 2.593750e-03   p_cons 1.472917e-01   p_joint 6.098333e-02

Joint ci ratio: 2.198343e-02	ci left: 6.026649e-02	ci right 6.160809e-02	k: 29858	n:490000
Cons ci ratio: 1.347801e-02	ci left: 1.462253e-01	ci right 1.482115e-01	k: 72136	n:490000
KS ci ratio: 1.101599e-01	ci left: 2.435525e-03	ci right 2.721427e-03	k: 1262	n:490000
HLA-G   490000 perm   178 sec   (2754 perm/sec)   p_kst 2.575510e-03   p_cons 1.472163e-01   p_joint 6.093469e-02

Joint ci ratio: 2.175274e-02	ci left: 6.032424e-02	ci right 6.165285e-02	k: 30493	n:500000
Cons ci ratio: 1.334055e-02	ci left: 1.462728e-01	ci right 1.482393e-01	k: 73627	n:500000
KS ci ratio: 1.093841e-01	ci left: 2.421825e-03	ci right 2.703988e-03	k: 1280	n:500000
HLA-G   500000 perm   183 sec   (2725 perm/sec)   p_kst 2.560000e-03   p_cons 1.472540e-01   p_joint 6.098600e-02

Joint ci ratio: 2.201295e-02	ci left: 5.789449e-02	ci right 5.918504e-02	k: 29854	n:510000
Cons ci ratio: 1.321371e-02	ci left: 1.461954e-01	ci right 1.481419e-01	k: 75055	n:510000
KS ci ratio: 1.084571e-01	ci left: 2.416300e-03	ci right 2.695281e-03	k: 1302	n:510000
HLA-G   510000 perm   189 sec   (2698 perm/sec)   p_kst 2.552941e-03   p_cons 1.471667e-01   p_joint 5.853725e-02

Joint ci ratio: 2.178483e-02	ci left: 5.797842e-02	ci right 5.925727e-02	k: 30480	n:520000
Cons ci ratio: 1.308590e-02	ci left: 1.462073e-01	ci right 1.481351e-01	k: 76528	n:520000
KS ci ratio: 1.073100e-01	ci left: 2.422227e-03	ci right 2.698747e-03	k: 1330	n:520000
HLA-G   520000 perm   195 sec   (2671 perm/sec)   p_kst 2.557692e-03   p_cons 1.471692e-01   p_joint 5.861538e-02

Joint ci ratio: 2.157397e-02	ci left: 5.800668e-02	ci right 5.927362e-02	k: 31078	n:530000
Cons ci ratio: 1.295813e-02	ci left: 1.462885e-01	ci right 1.481984e-01	k: 78038	n:530000
KS ci ratio: 1.060422e-01	ci left: 2.435291e-03	ci right 2.709814e-03	k: 1362	n:530000
HLA-G   530000 perm   200 sec   (2644 perm/sec)   p_kst 2.569811e-03   p_cons 1.472415e-01   p_joint 5.863774e-02

Joint ci ratio: 2.136733e-02	ci left: 5.804317e-02	ci right 5.929861e-02	k: 31681	n:540000
Cons ci ratio: 1.284028e-02	ci left: 1.462449e-01	ci right 1.481367e-01	k: 79482	n:540000
KS ci ratio: 1.047054e-01	ci left: 2.453301e-03	ci right 2.726153e-03	k: 1397	n:540000
HLA-G   540000 perm   206 sec   (2617 perm/sec)   p_kst 2.587037e-03   p_cons 1.471889e-01   p_joint 5.866852e-02

Joint ci ratio: 2.117139e-02	ci left: 5.805305e-02	ci right 5.929706e-02	k: 32270	n:550000
Cons ci ratio: 1.272421e-02	ci left: 1.462301e-01	ci right 1.481045e-01	k: 80941	n:550000
KS ci ratio: 1.037451e-01	ci left: 2.454736e-03	ci right 2.725091e-03	k: 1423	n:550000
HLA-G   550000 perm   212 sec   (2591 perm/sec)   p_kst 2.587273e-03   p_cons 1.471655e-01   p_joint 5.867273e-02

Joint ci ratio: 2.097498e-02	ci left: 5.809284e-02	ci right 5.932601e-02	k: 32876	n:560000
Cons ci ratio: 1.260934e-02	ci left: 1.462534e-01	ci right 1.481110e-01	k: 82421	n:560000
KS ci ratio: 1.029533e-01	ci left: 2.449172e-03	ci right 2.716730e-03	k: 1445	n:560000
HLA-G   560000 perm   218 sec   (2565 perm/sec)   p_kst 2.580357e-03   p_cons 1.471804e-01   p_joint 5.870714e-02

Joint ci ratio: 2.078955e-02	ci left: 5.810161e-02	ci right 5.932393e-02	k: 33465	n:570000
Cons ci ratio: 1.249613e-02	ci left: 1.463039e-01	ci right 1.481453e-01	k: 83917	n:570000
KS ci ratio: 1.019705e-01	ci left: 2.454068e-03	ci right 2.719449e-03	k: 1473	n:570000
HLA-G   570000 perm   224 sec   (2541 perm/sec)   p_kst 2.584211e-03   p_cons 1.472228e-01   p_joint 5.871053e-02

Joint ci ratio: 2.061119e-02	ci left: 5.809811e-02	ci right 5.930975e-02	k: 34047	n:580000
Cons ci ratio: 1.239170e-02	ci left: 1.462358e-01	ci right 1.480609e-01	k: 85345	n:580000
KS ci ratio: 1.009481e-01	ci left: 2.462169e-03	ci right 2.725598e-03	k: 1503	n:580000
HLA-G   580000 perm   230 sec   (2517 perm/sec)   p_kst 2.591379e-03   p_cons 1.471466e-01   p_joint 5.870172e-02

Joint ci ratio: 2.042545e-02	ci left: 5.815887e-02	ci right 5.936072e-02	k: 34667	n:590000
Cons ci ratio: 1.228653e-02	ci left: 1.462377e-01	ci right 1.480472e-01	k: 86813	n:590000
KS ci ratio: 9.985788e-02	ci left: 2.474965e-03	ci right 2.736736e-03	k: 1536	n:590000
HLA-G   590000 perm   236 sec   (2495 perm/sec)   p_kst 2.603390e-03   p_cons 1.471407e-01   p_joint 5.875763e-02

Outputting figure to mutsig2_images.part000000000079/HLA-G.2_1041_590000_0.0026034_0.14714_0.058758.png
                gene_name: HLA-G
               theta_stop: 0.100 
                    nperm: 590000 
                     p_ks: 0.0026 
        ci_ks_bounds_left: 0.0025 
       ci_ks_bounds_right: 0.0027 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.059 
     ci_joint_bounds_left: 0.058 
    ci_joint_bounds_right: 0.059 

Current progress: 94 percent done.
HMG20A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.086321e-02	ci left: 2.259279e-01	ci right 2.426271e-01	k: 2342	n:10000
KS ci ratio: 3.284314e-02	ci left: 5.777771e-01	ci right 5.971719e-01	k: 5875	n:10000
HMG20A   10000 perm   1 sec   (6693 perm/sec)   p_kst 5.875000e-01   p_cons 2.342000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000079/HMG20A.2_1076_10000_0.5875_0.2342_1.png
                gene_name: HMG20A
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
HMGCLL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.025994e-02	ci left: 7.810721e-01	ci right 7.971591e-01	k: 7892	n:10000
KS ci ratio: 7.312811e-02	ci left: 2.149717e-01	ci right 2.313898e-01	k: 2231	n:10000
HMGCLL1   10000 perm   2 sec   (6596 perm/sec)   p_kst 2.231000e-01   p_cons 7.892000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000079/HMGCLL1.2_1153_10000_0.2231_0.7892_1.png
                gene_name: HMGCLL1
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000079
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 79 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1712>
Subject: Job 8004165: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1712>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000080> was used as the working directory.
Started at Sun Nov 11 15:06:41 2012
Results reported at Sun Nov 11 15:14:15 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000080.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000080.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 80  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000080.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    494.33 sec.
    Max Memory :      4687 MB
    Max Swap   :      7161 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
80
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 80
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 80: processing genes 7148 - 7238
Calculating significance of each gene.
Using projection method.
7148	HMHA1	6.747853e-01
7149	HMHB1	1
7150	HMMR	6.990664e-01
7151	HMOX1	1
7152	HMOX2	1
7153	HMP19	1
7154	HMSD	1
7155	HMX2	1
7156	HMX3	4.866198e-01
7157	HN1	1
7158	HN1L	2.973182e-01
7159	HNF1A	7.195091e-01
7160	HNF1B	8.116408e-01
7161	HNF4A	7.014432e-01
7162	HNF4G	4.080344e-01
7163	HNMT	2.046180e-01
7164	HNRNPA0	6.376452e-01
7165	HNRNPA1	1.062798e-01
7166	HNRNPA1L2	3.015174e-01
7167	HNRNPA2B1	4.769147e-01
7168	HNRNPA3	4.998169e-01
7169	HNRNPAB	1
7170	HNRNPC	3.318074e-01
7171	HNRNPCL1	1
7172	HNRNPD	5.077697e-01
7173	HNRNPF	5.748812e-01
7174	HNRNPH1	1
7175	HNRNPH2	5.209995e-01
7176	HNRNPH3	5.389849e-01
7177	HNRNPK	1
7178	HNRNPL	1
7179	HNRNPM	9.627971e-01
7180	HNRNPR	7.742077e-01
7181	HNRNPU	1
7182	HNRNPUL1	8.239035e-01
7183	HNRNPUL2	4.146867e-01
7184	HNRPDL	1
7185	HNRPLL	6.541959e-01
7186	HOMER1	1
7187	HOMER2	1
7188	HOMER3	3.169579e-01
7189	HOMEZ	1.409176e-01
7190	HOOK1	3.523399e-01
7191	HOOK2	2.043611e-01
7192	HOOK3	5.233048e-01
7193	HOPX	3.322776e-02
7194	HORMAD1	1.000460e-01
7195	HORMAD2	5.357163e-01
7196	HOXA1	4.451661e-01
7197	HOXA10	1.894560e-01
7198	HOXA11	1
7199	HOXA13	5.887686e-01
7200	HOXA2	7.114299e-01
7201	HOXA3	1
7202	HOXA4	2.613891e-01
7203	HOXA5	1
7204	HOXA6	6.298624e-01
7205	HOXA7	2.735475e-01
7206	HOXA9	1
7207	HOXB1	1
7208	HOXB13	7.046063e-01
7209	HOXB2	1
7210	HOXB3	3.828565e-01
7211	HOXB4	1
7212	HOXB5	6.186995e-01
7213	HOXB6	5.578640e-01
7214	HOXB7	8.967988e-02
7215	HOXB8	1.547484e-02
7216	HOXB9	1.642026e-01
7217	HOXC10	1.939857e-02
7218	HOXC11	1.769170e-01
7219	HOXC12	5.010433e-01
7220	HOXC13	1
7221	HOXC4	4.796423e-01
7222	HOXC5	1
7223	HOXC6	3.011395e-01
7224	HOXC8	5.536822e-01
7225	HOXC9	4.996215e-01
7226	HOXD1	4.535850e-01
7227	HOXD10	8.268952e-02
7228	HOXD11	4.183284e-01
7229	HOXD12	1.167476e-01
7230	HOXD13	1
7231	HOXD3	7.504738e-01
7232	HOXD4	3.053682e-01
7233	HOXD8	3.698121e-01
7234	HOXD9	1.086610e-01
7235	HP	1
7236	HP1BP3	1
7237	HPCA	1
7238	HPCAL1	1
Done

Running MutSig 2:
Scatter job 80: processing genes 7148 - 7238
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
HOMEZ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.953620e-01	ci left: 3.490925e-02	ci right 4.256245e-02	k: 386	n:10000
Cons ci ratio: 3.571839e-01	ci left: 9.776646e-03	ci right 1.411465e-02	k: 118	n:10000
KS ci ratio: 8.176015e-02	ci left: 1.792031e-01	ci right 1.945798e-01	k: 1868	n:10000
HOMEZ   10000 perm   2 sec   (5815 perm/sec)   p_kst 1.868000e-01   p_cons 1.180000e-02   p_joint 3.860000e-02

Joint ci ratio: 1.400379e-01	ci left: 3.505436e-02	ci right 4.038113e-02	k: 753	n:20000
Cons ci ratio: 2.541997e-01	ci left: 1.025603e-02	ci right 1.328841e-02	k: 234	n:20000
KS ci ratio: 5.672470e-02	ci left: 1.872537e-01	ci right 1.982358e-01	k: 3854	n:20000
HOMEZ   20000 perm   6 sec   (3511 perm/sec)   p_kst 1.927000e-01   p_cons 1.170000e-02   p_joint 3.765000e-02

Joint ci ratio: 1.151907e-01	ci left: 3.502189e-02	ci right 3.933500e-02	k: 1114	n:30000
Cons ci ratio: 2.068140e-01	ci left: 1.060884e-02	ci right 1.308704e-02	k: 354	n:30000
KS ci ratio: 4.647759e-02	ci left: 1.871929e-01	ci right 1.961335e-01	k: 5749	n:30000
HOMEZ   30000 perm   8 sec   (3833 perm/sec)   p_kst 1.916333e-01   p_cons 1.180000e-02   p_joint 3.713333e-02

Joint ci ratio: 1.133121e-01	ci left: 2.740160e-02	ci right 3.071724e-02	k: 1161	n:40000
Cons ci ratio: 1.785985e-01	ci left: 1.083650e-02	ci right 1.298523e-02	k: 475	n:40000
KS ci ratio: 4.032462e-02	ci left: 1.872322e-01	ci right 1.949626e-01	k: 7643	n:40000
HOMEZ   40000 perm   10 sec   (3996 perm/sec)   p_kst 1.910750e-01   p_cons 1.187500e-02   p_joint 2.902500e-02

Joint ci ratio: 1.388967e-01	ci left: 1.458993e-02	ci right 1.678682e-02	k: 783	n:50000
Cons ci ratio: 1.629616e-01	ci left: 1.050712e-02	ci right 1.239024e-02	k: 571	n:50000
KS ci ratio: 3.500450e-02	ci left: 1.969981e-01	ci right 2.040367e-01	k: 10025	n:50000
HOMEZ   50000 perm   12 sec   (4023 perm/sec)   p_kst 2.005000e-01   p_cons 1.142000e-02   p_joint 1.566000e-02

Joint ci ratio: 8.785234e-02	ci left: 3.070394e-02	ci right 3.354155e-02	k: 1926	n:60000
Cons ci ratio: 1.413830e-01	ci left: 1.175498e-02	ci right 1.355929e-02	k: 758	n:60000
KS ci ratio: 3.201821e-02	ci left: 1.966731e-01	ci right 2.030893e-01	k: 11992	n:60000
HOMEZ   60000 perm   15 sec   (4030 perm/sec)   p_kst 1.998667e-01   p_cons 1.263333e-02   p_joint 3.210000e-02

Joint ci ratio: 7.579988e-02	ci left: 3.540336e-02	ci right 3.820663e-02	k: 2575	n:70000
Cons ci ratio: 1.311582e-01	ci left: 1.177300e-02	ci right 1.343920e-02	k: 881	n:70000
KS ci ratio: 2.964952e-02	ci left: 1.968433e-01	ci right 2.027816e-01	k: 13986	n:70000
HOMEZ   70000 perm   17 sec   (4049 perm/sec)   p_kst 1.998000e-01   p_cons 1.258571e-02   p_joint 3.678571e-02

Joint ci ratio: 7.956184e-02	ci left: 2.827705e-02	ci right 3.063224e-02	k: 2355	n:80000
Cons ci ratio: 1.221972e-01	ci left: 1.192340e-02	ci right 1.348724e-02	k: 1015	n:80000
KS ci ratio: 2.770119e-02	ci left: 1.974194e-01	ci right 2.029774e-01	k: 16015	n:80000
HOMEZ   80000 perm   20 sec   (4047 perm/sec)   p_kst 2.001875e-01   p_cons 1.268750e-02   p_joint 2.943750e-02

Joint ci ratio: 7.899289e-02	ci left: 2.558025e-02	ci right 2.769485e-02	k: 2396	n:90000
Cons ci ratio: 1.153109e-01	ci left: 1.194623e-02	ci right 1.341876e-02	k: 1140	n:90000
KS ci ratio: 2.613145e-02	ci left: 1.974019e-01	ci right 2.026397e-01	k: 18001	n:90000
HOMEZ   90000 perm   22 sec   (4031 perm/sec)   p_kst 2.000111e-01   p_cons 1.266667e-02   p_joint 2.662222e-02

Joint ci ratio: 7.660024e-02	ci left: 2.454156e-02	ci right 2.650609e-02	k: 2551	n:100000
Cons ci ratio: 1.089064e-01	ci left: 1.209298e-02	ci right 1.349549e-02	k: 1278	n:100000
KS ci ratio: 2.484267e-02	ci left: 1.968676e-01	ci right 2.018298e-01	k: 19934	n:100000
HOMEZ   100000 perm   25 sec   (4005 perm/sec)   p_kst 1.993400e-01   p_cons 1.278000e-02   p_joint 2.551000e-02

Joint ci ratio: 7.431123e-02	ci left: 2.375509e-02	ci right 2.559736e-02	k: 2713	n:110000
Cons ci ratio: 1.042859e-01	ci left: 1.202003e-02	ci right 1.335130e-02	k: 1394	n:110000
KS ci ratio: 2.368622e-02	ci left: 1.969880e-01	ci right 2.017188e-01	k: 21928	n:110000
HOMEZ   110000 perm   28 sec   (3864 perm/sec)   p_kst 1.993455e-01   p_cons 1.267273e-02   p_joint 2.466364e-02

Joint ci ratio: 6.867531e-02	ci left: 2.552478e-02	ci right 2.734820e-02	k: 3171	n:120000
Cons ci ratio: 9.980694e-02	ci left: 1.205782e-02	ci right 1.333256e-02	k: 1522	n:120000
KS ci ratio: 2.267106e-02	ci left: 1.971840e-01	ci right 2.017139e-01	k: 23933	n:120000
HOMEZ   120000 perm   32 sec   (3778 perm/sec)   p_kst 1.994417e-01   p_cons 1.268333e-02   p_joint 2.642500e-02

Outputting figure to mutsig2_images.part000000000080/HOMEZ.5_1661_120000_0.19944_0.012683_0.026425.png
                gene_name: HOMEZ
               theta_stop: 0.100 
                    nperm: 120000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.013 
      ci_cons_bounds_left: 0.012 
     ci_cons_bounds_right: 0.013 
                  p_joint: 0.026 
     ci_joint_bounds_left: 0.026 
    ci_joint_bounds_right: 0.027 

Current progress: 2 percent done.
HOXC10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.779874e-02	ci left: 8.215767e-01	ci right 8.364311e-01	k: 8291	n:10000
KS ci ratio: 1.186767e-02	ci left: 9.104942e-01	ci right 9.214620e-01	k: 9161	n:10000
HOXC10   10000 perm   2 sec   (6247 perm/sec)   p_kst 9.161000e-01   p_cons 8.291000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000080/HOXC10.5_1037_10000_0.9161_0.8291_1.png
                gene_name: HOXC10
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 5 percent done.
HNRNPM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.778155e-02	ci left: 3.925691e-01	ci right 4.118879e-01	k: 4022	n:10000
Cons ci ratio: 4.104834e-02	ci left: 4.670686e-01	ci right 4.867449e-01	k: 4769	n:10000
KS ci ratio: 6.687871e-02	ci left: 2.470728e-01	ci right 2.642697e-01	k: 2556	n:10000
HNRNPM   10000 perm   2 sec   (5283 perm/sec)   p_kst 2.556000e-01   p_cons 4.769000e-01   p_joint 4.022000e-01

Outputting figure to mutsig2_images.part000000000080/HNRNPM.4_2257_10000_0.2556_0.4769_0.4022.png
                gene_name: HNRNPM
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 7 percent done.
HOOK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.489509e-02	ci left: 4.227607e-01	ci right 4.422786e-01	k: 4325	n:10000
Cons ci ratio: 4.695702e-02	ci left: 4.009353e-01	ci right 4.203168e-01	k: 4106	n:10000
KS ci ratio: 7.762261e-02	ci left: 1.952523e-01	ci right 2.111210e-01	k: 2031	n:10000
HOOK1   10000 perm   2 sec   (5569 perm/sec)   p_kst 2.031000e-01   p_cons 4.106000e-01   p_joint 4.325000e-01

Outputting figure to mutsig2_images.part000000000080/HOOK1.4_2275_10000_0.2031_0.4106_0.4325.png
                gene_name: HOOK1
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 9 percent done.
HOOK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.714277e-02	ci left: 6.666264e-01	ci right 6.850711e-01	k: 6759	n:10000
Cons ci ratio: 4.902580e-02	ci left: 3.803239e-01	ci right 3.995402e-01	k: 3899	n:10000
KS ci ratio: 3.052986e-02	ci left: 6.128138e-01	ci right 6.319149e-01	k: 6224	n:10000
HOOK2   10000 perm   2 sec   (5509 perm/sec)   p_kst 6.224000e-01   p_cons 3.899000e-01   p_joint 6.759000e-01

Outputting figure to mutsig2_images.part000000000080/HOOK2.4_2252_10000_0.6224_0.3899_0.6759.png
                gene_name: HOOK2
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 12 percent done.
HOXB8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.107936e-02	ci left: 7.673949e-01	ci right 7.838442e-01	k: 7757	n:10000
Cons ci ratio: 2.895871e-02	ci left: 6.374410e-01	ci right 6.562734e-01	k: 6469	n:10000
KS ci ratio: 3.598625e-02	ci left: 5.327746e-01	ci right 5.524006e-01	k: 5426	n:10000
HOXB8   10000 perm   2 sec   (6171 perm/sec)   p_kst 5.426000e-01   p_cons 6.469000e-01   p_joint 7.757000e-01

Outputting figure to mutsig2_images.part000000000080/HOXB8.4_740_10000_0.5426_0.6469_0.7757.png
                gene_name: HOXB8
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 14 percent done.
HOXD10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.909827e-02	ci left: 6.352285e-01	ci right 6.540872e-01	k: 6447	n:10000
Cons ci ratio: 6.126117e-02	ci left: 2.815149e-01	ci right 2.994073e-01	k: 2904	n:10000
KS ci ratio: 2.822100e-02	ci left: 6.492111e-01	ci right 6.678964e-01	k: 6586	n:10000
HOXD10   10000 perm   2 sec   (5994 perm/sec)   p_kst 6.586000e-01   p_cons 2.904000e-01   p_joint 6.447000e-01

Outputting figure to mutsig2_images.part000000000080/HOXD10.4_1031_10000_0.6586_0.2904_0.6447.png
                gene_name: HOXD10
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.65 

Current progress: 16 percent done.
HMHA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.883207e-02	ci left: 6.394525e-01	ci right 6.582607e-01	k: 6489	n:10000
KS ci ratio: 3.216342e-02	ci left: 5.879114e-01	ci right 6.072317e-01	k: 5976	n:10000
HMHA1   10000 perm   2 sec   (5448 perm/sec)   p_kst 5.976000e-01   p_cons 6.489000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000080/HMHA1.3_3503_10000_0.5976_0.6489_1.png
                gene_name: HMHA1
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 19 percent done.
HNMT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.927568e-02	ci left: 7.974007e-01	ci right 8.130211e-01	k: 8053	n:10000
Cons ci ratio: 4.676357e-02	ci left: 4.029277e-01	ci right 4.223232e-01	k: 4126	n:10000
KS ci ratio: 3.682802e-02	ci left: 5.212613e-01	ci right 5.409206e-01	k: 5311	n:10000
HNMT   10000 perm   2 sec   (6271 perm/sec)   p_kst 5.311000e-01   p_cons 4.126000e-01   p_joint 8.053000e-01

Outputting figure to mutsig2_images.part000000000080/HNMT.3_1121_10000_0.5311_0.4126_0.8053.png
                gene_name: HNMT
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 21 percent done.
HNRNPA1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.438940e-02	ci left: 8.747995e-01	ci right 8.875775e-01	k: 8813	n:10000
Cons ci ratio: 7.512432e-02	ci left: 2.058972e-01	ci right 2.220697e-01	k: 2139	n:10000
KS ci ratio: 3.437765e-02	ci left: 5.554160e-01	ci right 5.749460e-01	k: 5652	n:10000
HNRNPA1   10000 perm   1 sec   (6823 perm/sec)   p_kst 5.652000e-01   p_cons 2.139000e-01   p_joint 8.813000e-01

Outputting figure to mutsig2_images.part000000000080/HNRNPA1.2_1159_10000_0.5652_0.2139_0.8813.png
                gene_name: HNRNPA1
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.89 

Current progress: 23 percent done.
HNRNPF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.198086e-02	ci left: 1.465847e-01	ci right 1.608177e-01	k: 1536	n:10000
Cons ci ratio: 1.366775e-01	ci left: 7.078334e-02	ci right 8.126524e-02	k: 759	n:10000
KS ci ratio: 6.265710e-02	ci left: 2.724030e-01	ci right 2.901245e-01	k: 2812	n:10000
HNRNPF   10000 perm   2 sec   (6539 perm/sec)   p_kst 2.812000e-01   p_cons 7.590000e-02   p_joint 1.536000e-01

Joint ci ratio: 7.216866e-02	ci left: 1.238914e-01	ci right 1.332169e-01	k: 2570	n:20000
Cons ci ratio: 9.651026e-02	ci left: 7.251086e-02	ci right 7.991291e-02	k: 1523	n:20000
KS ci ratio: 4.409823e-02	ci left: 2.769130e-01	ci right 2.894501e-01	k: 5663	n:20000
HNRNPF   20000 perm   3 sec   (5784 perm/sec)   p_kst 2.831500e-01   p_cons 7.615000e-02   p_joint 1.285000e-01

Outputting figure to mutsig2_images.part000000000080/HNRNPF.3_1252_20000_0.28315_0.07615_0.1285.png
                gene_name: HNRNPF
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.076 
      ci_cons_bounds_left: 0.073 
     ci_cons_bounds_right: 0.080 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 26 percent done.
HNRNPUL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.325991e-02	ci left: 4.410133e-01	ci right 4.606154e-01	k: 4508	n:10000
Cons ci ratio: 3.225041e-02	ci left: 5.866068e-01	ci right 6.059371e-01	k: 5963	n:10000
KS ci ratio: 5.472561e-02	ci left: 3.297201e-01	ci right 3.483737e-01	k: 3390	n:10000
HNRNPUL2   10000 perm   2 sec   (5856 perm/sec)   p_kst 3.390000e-01   p_cons 5.963000e-01   p_joint 4.508000e-01

Outputting figure to mutsig2_images.part000000000080/HNRNPUL2.3_2300_10000_0.339_0.5963_0.4508.png
                gene_name: HNRNPUL2
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 28 percent done.
HOOK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.402930e-02	ci left: 5.604280e-01	ci right 5.799311e-01	k: 5702	n:10000
Cons ci ratio: 5.808866e-02	ci left: 3.037185e-01	ci right 3.219906e-01	k: 3128	n:10000
KS ci ratio: 3.047793e-02	ci left: 6.136175e-01	ci right 6.327106e-01	k: 6232	n:10000
HOOK3   10000 perm   2 sec   (6020 perm/sec)   p_kst 6.232000e-01   p_cons 3.128000e-01   p_joint 5.702000e-01

Outputting figure to mutsig2_images.part000000000080/HOOK3.3_2245_10000_0.6232_0.3128_0.5702.png
                gene_name: HOOK3
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 30 percent done.
HORMAD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.789100e-02	ci left: 3.914738e-01	ci right 4.107839e-01	k: 4011	n:10000
Cons ci ratio: 3.280928e-02	ci left: 5.782787e-01	ci right 5.976700e-01	k: 5880	n:10000
KS ci ratio: 6.003574e-02	ci left: 2.898383e-01	ci right 3.078790e-01	k: 2988	n:10000
HORMAD1   10000 perm   2 sec   (6271 perm/sec)   p_kst 2.988000e-01   p_cons 5.880000e-01   p_joint 4.011000e-01

Outputting figure to mutsig2_images.part000000000080/HORMAD1.3_1241_10000_0.2988_0.588_0.4011.png
                gene_name: HORMAD1
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 33 percent done.
HOXA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.591465e-02	ci left: 1.648463e-01	ci right 1.797451e-01	k: 1722	n:10000
Cons ci ratio: 4.420964e-01	ci left: 6.081359e-03	ci right 9.614411e-03	k: 77	n:10000
KS ci ratio: 3.222363e-02	ci left: 5.870082e-01	ci right 6.063355e-01	k: 5967	n:10000
HOXA3   10000 perm   2 sec   (6361 perm/sec)   p_kst 5.967000e-01   p_cons 7.700000e-03   p_joint 1.722000e-01

Joint ci ratio: 1.014209e-01	ci left: 6.596456e-02	ci right 7.306121e-02	k: 1389	n:20000
Cons ci ratio: 3.029783e-01	ci left: 7.043292e-03	ci right 9.602748e-03	k: 165	n:20000
KS ci ratio: 2.260499e-02	ci left: 5.937228e-01	ci right 6.073479e-01	k: 12011	n:20000
HOXA3   20000 perm   4 sec   (5607 perm/sec)   p_kst 6.005500e-01   p_cons 8.250000e-03   p_joint 6.945000e-02

Joint ci ratio: 6.466177e-02	ci left: 1.055934e-01	ci right 1.126825e-01	k: 3273	n:30000
Cons ci ratio: 2.499256e-01	ci left: 7.116901e-03	ci right 9.180058e-03	k: 243	n:30000
KS ci ratio: 1.849508e-02	ci left: 5.939960e-01	ci right 6.051181e-01	k: 17987	n:30000
HOXA3   30000 perm   6 sec   (5330 perm/sec)   p_kst 5.995667e-01   p_cons 8.100000e-03   p_joint 1.091000e-01

Joint ci ratio: 5.783234e-02	ci left: 1.000377e-01	ci right 1.060201e-01	k: 4120	n:40000
Cons ci ratio: 2.182537e-01	ci left: 7.126712e-03	ci right 8.895833e-03	k: 319	n:40000
KS ci ratio: 1.601457e-02	ci left: 5.948288e-01	ci right 6.044567e-01	k: 23986	n:40000
HOXA3   40000 perm   8 sec   (5146 perm/sec)   p_kst 5.996500e-01   p_cons 7.975000e-03   p_joint 1.030000e-01

Joint ci ratio: 5.067625e-02	ci left: 1.041650e-01	ci right 1.096007e-01	k: 5343	n:50000
Cons ci ratio: 1.937530e-01	ci left: 7.332995e-03	ci right 8.924907e-03	k: 405	n:50000
KS ci ratio: 1.436007e-02	ci left: 5.941276e-01	ci right 6.027410e-01	k: 29922	n:50000
HOXA3   50000 perm   10 sec   (4985 perm/sec)   p_kst 5.984400e-01   p_cons 8.100000e-03   p_joint 1.068600e-01

Joint ci ratio: 4.123264e-02	ci left: 1.282107e-01	ci right 1.336250e-01	k: 7854	n:60000
Cons ci ratio: 1.797200e-01	ci left: 7.159405e-03	ci right 8.588814e-03	k: 471	n:60000
KS ci ratio: 1.309367e-02	ci left: 5.950654e-01	ci right 6.029250e-01	k: 35940	n:60000
HOXA3   60000 perm   12 sec   (4851 perm/sec)   p_kst 5.990000e-01   p_cons 7.850000e-03   p_joint 1.309000e-01

Joint ci ratio: 3.926136e-02	ci left: 1.222044e-01	ci right 1.271125e-01	k: 8725	n:70000
Cons ci ratio: 1.657326e-01	ci left: 7.271188e-03	ci right 8.598659e-03	k: 554	n:70000
KS ci ratio: 1.212962e-02	ci left: 5.950720e-01	ci right 6.023484e-01	k: 41910	n:70000
HOXA3   70000 perm   15 sec   (4735 perm/sec)   p_kst 5.987143e-01   p_cons 7.914286e-03   p_joint 1.246429e-01

Joint ci ratio: 3.611302e-02	ci left: 1.260519e-01	ci right 1.307001e-01	k: 10269	n:80000
Cons ci ratio: 1.553111e-01	ci left: 7.286159e-03	ci right 8.524927e-03	k: 631	n:80000
KS ci ratio: 1.134186e-02	ci left: 5.954939e-01	ci right 6.022989e-01	k: 47912	n:80000
HOXA3   80000 perm   17 sec   (4628 perm/sec)   p_kst 5.989000e-01   p_cons 7.887500e-03   p_joint 1.283625e-01

Joint ci ratio: 4.137818e-02	ci left: 8.879841e-02	ci right 9.256135e-02	k: 8160	n:90000
Cons ci ratio: 1.482255e-01	ci left: 7.139281e-03	ci right 8.292789e-03	k: 693	n:90000
KS ci ratio: 1.070337e-02	ci left: 5.952331e-01	ci right 6.016495e-01	k: 53860	n:90000
HOXA3   90000 perm   20 sec   (4531 perm/sec)   p_kst 5.984444e-01   p_cons 7.700000e-03   p_joint 9.066667e-02

Joint ci ratio: 3.282397e-02	ci left: 1.227675e-01	ci right 1.268743e-01	k: 12481	n:100000
Cons ci ratio: 1.404459e-01	ci left: 7.186849e-03	ci right 8.281994e-03	k: 772	n:100000
KS ci ratio: 1.015147e-02	ci left: 5.955240e-01	ci right 6.016103e-01	k: 59857	n:100000
HOXA3   100000 perm   23 sec   (4442 perm/sec)   p_kst 5.985700e-01   p_cons 7.720000e-03   p_joint 1.248100e-01

Joint ci ratio: 2.892236e-02	ci left: 1.410265e-01	ci right 1.451742e-01	k: 15740	n:110000
Cons ci ratio: 1.344930e-01	ci left: 7.147972e-03	ci right 8.187330e-03	k: 842	n:110000
KS ci ratio: 9.672591e-03	ci left: 5.959874e-01	ci right 6.017892e-01	k: 65878	n:110000
HOXA3   110000 perm   25 sec   (4356 perm/sec)   p_kst 5.988909e-01   p_cons 7.654545e-03   p_joint 1.430909e-01

Joint ci ratio: 2.574179e-02	ci left: 1.598613e-01	ci right 1.640384e-01	k: 19433	n:120000
Cons ci ratio: 1.277656e-01	ci left: 7.285807e-03	ci right 8.288199e-03	k: 933	n:120000
KS ci ratio: 9.279760e-03	ci left: 5.951276e-01	ci right 6.006843e-01	k: 71749	n:120000
HOXA3   120000 perm   28 sec   (4277 perm/sec)   p_kst 5.979083e-01   p_cons 7.775000e-03   p_joint 1.619417e-01

Joint ci ratio: 2.469240e-02	ci left: 1.603759e-01	ci right 1.643931e-01	k: 21109	n:130000
Cons ci ratio: 1.226211e-01	ci left: 7.321485e-03	ci right 8.285280e-03	k: 1013	n:130000
KS ci ratio: 8.911159e-03	ci left: 5.954827e-01	ci right 6.008206e-01	k: 77760	n:130000
HOXA3   130000 perm   31 sec   (4202 perm/sec)   p_kst 5.981538e-01   p_cons 7.792308e-03   p_joint 1.623769e-01

Joint ci ratio: 2.373740e-02	ci left: 1.610970e-01	ci right 1.649741e-01	k: 22824	n:140000
Cons ci ratio: 1.189871e-01	ci left: 7.234905e-03	ci right 8.157089e-03	k: 1076	n:140000
KS ci ratio: 8.578536e-03	ci left: 5.960553e-01	ci right 6.011977e-01	k: 83808	n:140000
HOXA3   140000 perm   34 sec   (4132 perm/sec)   p_kst 5.986286e-01   p_cons 7.685714e-03   p_joint 1.630286e-01

Joint ci ratio: 2.260822e-02	ci left: 1.650692e-01	ci right 1.688504e-01	k: 25043	n:150000
Cons ci ratio: 1.148486e-01	ci left: 7.263850e-03	ci right 8.155337e-03	k: 1155	n:150000
KS ci ratio: 8.287460e-03	ci left: 5.961542e-01	ci right 6.011220e-01	k: 89796	n:150000
HOXA3   150000 perm   37 sec   (4061 perm/sec)   p_kst 5.986400e-01   p_cons 7.700000e-03   p_joint 1.669533e-01

Joint ci ratio: 2.237192e-02	ci left: 1.591897e-01	ci right 1.627976e-01	k: 25758	n:160000
Cons ci ratio: 1.106186e-01	ci left: 7.356520e-03	ci right 8.223959e-03	k: 1245	n:160000
KS ci ratio: 8.023614e-03	ci left: 5.962746e-01	ci right 6.010843e-01	k: 95789	n:160000
HOXA3   160000 perm   40 sec   (3995 perm/sec)   p_kst 5.986813e-01   p_cons 7.781250e-03   p_joint 1.609875e-01

Joint ci ratio: 2.258626e-02	ci left: 1.488150e-01	ci right 1.522204e-01	k: 25587	n:170000
Cons ci ratio: 1.074334e-01	ci left: 7.352929e-03	ci right 8.193400e-03	k: 1320	n:170000
KS ci ratio: 7.785940e-03	ci left: 5.962299e-01	ci right 6.008961e-01	k: 101756	n:170000
HOXA3   170000 perm   43 sec   (3931 perm/sec)   p_kst 5.985647e-01   p_cons 7.764706e-03   p_joint 1.505118e-01

Joint ci ratio: 2.291315e-02	ci left: 1.382563e-01	ci right 1.414664e-01	k: 25174	n:180000
Cons ci ratio: 1.038359e-01	ci left: 7.447469e-03	ci right 8.268500e-03	k: 1413	n:180000
KS ci ratio: 7.567245e-03	ci left: 5.962533e-01	ci right 6.007880e-01	k: 107734	n:180000
HOXA3   180000 perm   47 sec   (3870 perm/sec)   p_kst 5.985222e-01   p_cons 7.850000e-03   p_joint 1.398556e-01

Joint ci ratio: 2.217924e-02	ci left: 1.396266e-01	ci right 1.427633e-01	k: 26826	n:190000
Cons ci ratio: 1.011196e-01	ci left: 7.450374e-03	ci right 8.248962e-03	k: 1490	n:190000
KS ci ratio: 7.367856e-03	ci left: 5.961547e-01	ci right 6.005686e-01	k: 113689	n:190000
HOXA3   190000 perm   50 sec   (3799 perm/sec)   p_kst 5.983632e-01   p_cons 7.842105e-03   p_joint 1.411895e-01

Joint ci ratio: 2.161183e-02	ci left: 1.397313e-01	ci right 1.427891e-01	k: 28251	n:200000
Cons ci ratio: 9.902045e-02	ci left: 7.389835e-03	ci right 8.164534e-03	k: 1554	n:200000
KS ci ratio: 7.179778e-03	ci left: 5.963127e-01	ci right 6.006145e-01	k: 119693	n:200000
HOXA3   200000 perm   53 sec   (3745 perm/sec)   p_kst 5.984650e-01   p_cons 7.770000e-03   p_joint 1.412550e-01

Outputting figure to mutsig2_images.part000000000080/HOXA3.3_1340_200000_0.59847_0.00777_0.14125.png
                gene_name: HOXA3
               theta_stop: 0.099 
                    nperm: 200000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.0078 
      ci_cons_bounds_left: 0.0074 
     ci_cons_bounds_right: 0.0082 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.14 

Current progress: 35 percent done.
HOXD12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.527676e-02	ci left: 6.972641e-01	ci right 7.152157e-01	k: 7063	n:10000
Cons ci ratio: 3.253919e-02	ci left: 5.822919e-01	ci right 6.016545e-01	k: 5920	n:10000
KS ci ratio: 6.473460e-02	ci left: 2.595354e-01	ci right 2.769998e-01	k: 2682	n:10000
HOXD12   10000 perm   2 sec   (6569 perm/sec)   p_kst 2.682000e-01   p_cons 5.920000e-01   p_joint 7.063000e-01

Outputting figure to mutsig2_images.part000000000080/HOXD12.3_821_10000_0.2682_0.592_0.7063.png
                gene_name: HOXD12
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 37 percent done.
HOXD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.352362e-03	ci left: 9.623645e-01	ci right 9.695607e-01	k: 9661	n:10000
Cons ci ratio: 3.602976e-02	ci left: 5.321738e-01	ci right 5.518018e-01	k: 5420	n:10000
KS ci ratio: 1.131130e-02	ci left: 9.178069e-01	ci right 9.283451e-01	k: 9232	n:10000
HOXD3   10000 perm   2 sec   (4320 perm/sec)   p_kst 9.232000e-01   p_cons 5.420000e-01   p_joint 9.661000e-01

Outputting figure to mutsig2_images.part000000000080/HOXD3.3_1307_10000_0.9232_0.542_0.9661.png
                gene_name: HOXD3
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 40 percent done.
HMMR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.659824e-02	ci left: 8.408121e-01	ci right 8.549846e-01	k: 8480	n:10000
KS ci ratio: 6.380780e-02	ci left: 2.651762e-01	ci right 2.827556e-01	k: 2739	n:10000
HMMR   10000 perm   2 sec   (6060 perm/sec)   p_kst 2.739000e-01   p_cons 8.480000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000080/HMMR.2_2250_10000_0.2739_0.848_1.png
                gene_name: HMMR
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 42 percent done.
HNF1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.755337e-02	ci left: 8.255431e-01	ci right 8.402624e-01	k: 8330	n:10000
Cons ci ratio: 4.819129e-02	ci left: 3.884867e-01	ci right 4.077727e-01	k: 3981	n:10000
KS ci ratio: 4.978634e-02	ci left: 3.730595e-01	ci right 3.922089e-01	k: 3826	n:10000
HNF1A   10000 perm   2 sec   (6315 perm/sec)   p_kst 3.826000e-01   p_cons 3.981000e-01   p_joint 8.330000e-01

Outputting figure to mutsig2_images.part000000000080/HNF1A.2_1936_10000_0.3826_0.3981_0.833.png
                gene_name: HNF1A
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 44 percent done.
HNF4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.699097e-02	ci left: 5.190593e-01	ci right 5.387238e-01	k: 5289	n:10000
KS ci ratio: 8.914833e-03	ci left: 9.464818e-01	ci right 9.550532e-01	k: 9509	n:10000
HNF4A   10000 perm   2 sec   (6612 perm/sec)   p_kst 9.509000e-01   p_cons 5.289000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000080/HNF4A.2_1643_10000_0.9509_0.5289_1.png
                gene_name: HNF4A
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 47 percent done.
HNF4G
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.731015e-02	ci left: 6.639075e-01	ci right 6.823916e-01	k: 6732	n:10000
Cons ci ratio: 3.100581e-02	ci left: 6.054810e-01	ci right 6.246520e-01	k: 6151	n:10000
KS ci ratio: 3.503264e-02	ci left: 5.460965e-01	ci right 5.656709e-01	k: 5559	n:10000
HNF4G   10000 perm   1 sec   (6756 perm/sec)   p_kst 5.559000e-01   p_cons 6.151000e-01   p_joint 6.732000e-01

Outputting figure to mutsig2_images.part000000000080/HNF4G.2_1378_10000_0.5559_0.6151_0.6732.png
                gene_name: HNF4G
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 49 percent done.
HNRNPA1L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.146020e-02	ci left: 3.576425e-01	ci right 3.766349e-01	k: 3671	n:10000
Cons ci ratio: 8.222034e-02	ci left: 1.775304e-01	ci right 1.928534e-01	k: 1851	n:10000
KS ci ratio: 5.493380e-02	ci left: 3.280320e-01	ci right 3.466628e-01	k: 3373	n:10000
HNRNPA1L2   10000 perm   1 sec   (6742 perm/sec)   p_kst 3.373000e-01   p_cons 1.851000e-01   p_joint 3.671000e-01

Outputting figure to mutsig2_images.part000000000080/HNRNPA1L2.2_967_10000_0.3373_0.1851_0.3671.png
                gene_name: HNRNPA1L2
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 51 percent done.
HNRNPA2B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.237174e-02	ci left: 1.455058e-01	ci right 1.596972e-01	k: 1525	n:10000
KS ci ratio: 2.657465e-02	ci left: 6.758935e-01	ci right 6.941986e-01	k: 6851	n:10000
HNRNPA2B1   10000 perm   1 sec   (6976 perm/sec)   p_kst 6.851000e-01   p_cons 1.525000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000080/HNRNPA2B1.2_1106_10000_0.6851_0.1525_1.png
                gene_name: HNRNPA2B1
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 53 percent done.
HNRNPC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.765680e-02	ci left: 5.101534e-01	ci right 5.298350e-01	k: 5200	n:10000
Cons ci ratio: 1.730686e-02	ci left: 8.295109e-01	ci right 8.440923e-01	k: 8369	n:10000
KS ci ratio: 4.182965e-02	ci left: 4.576816e-01	ci right 4.773374e-01	k: 4675	n:10000
HNRNPC   10000 perm   1 sec   (6789 perm/sec)   p_kst 4.675000e-01   p_cons 8.369000e-01   p_joint 5.200000e-01

Outputting figure to mutsig2_images.part000000000080/HNRNPC.2_949_10000_0.4675_0.8369_0.52.png
                gene_name: HNRNPC
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 56 percent done.
HNRNPH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.113507e-02	ci left: 9.200754e-01	ci right 9.304753e-01	k: 9254	n:10000
KS ci ratio: 2.363374e-02	ci left: 7.246163e-01	ci right 7.420476e-01	k: 7334	n:10000
HNRNPH2   10000 perm   2 sec   (6586 perm/sec)   p_kst 7.334000e-01   p_cons 9.254000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000080/HNRNPH2.2_1354_10000_0.7334_0.9254_1.png
                gene_name: HNRNPH2
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 58 percent done.
HNRNPL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.136378e-02	ci left: 7.626362e-01	ci right 7.792057e-01	k: 7710	n:10000
Cons ci ratio: 1.000817e-01	ci left: 1.263042e-01	ci right 1.397104e-01	k: 1329	n:10000
KS ci ratio: 2.268173e-01	ci left: 2.570435e-02	ci right 3.237377e-02	k: 289	n:10000
HNRNPL   10000 perm   2 sec   (6302 perm/sec)   p_kst 2.890000e-02   p_cons 1.329000e-01   p_joint 7.710000e-01

Joint ci ratio: 4.206011e-02	ci left: 2.963865e-01	ci right 3.091708e-01	k: 6055	n:20000
Cons ci ratio: 7.076969e-02	ci left: 1.282732e-01	ci right 1.377338e-01	k: 2659	n:20000
KS ci ratio: 1.544545e-01	ci left: 2.878572e-02	ci right 3.365183e-02	k: 623	n:20000
HNRNPL   20000 perm   4 sec   (5623 perm/sec)   p_kst 3.115000e-02   p_cons 1.329500e-01   p_joint 3.027500e-01

Joint ci ratio: 3.408345e-02	ci left: 3.007545e-01	ci right 3.112165e-01	k: 9179	n:30000
Cons ci ratio: 5.766691e-02	ci left: 1.296044e-01	ci right 1.373334e-01	k: 4003	n:30000
KS ci ratio: 1.250818e-01	ci left: 2.971393e-02	ci right 3.371077e-02	k: 950	n:30000
HNRNPL   30000 perm   6 sec   (5353 perm/sec)   p_kst 3.166667e-02   p_cons 1.334333e-01   p_joint 3.059667e-01

Joint ci ratio: 2.953280e-02	ci left: 3.012367e-01	ci right 3.102915e-01	k: 12230	n:40000
Cons ci ratio: 4.995015e-02	ci left: 1.300822e-01	ci right 1.367711e-01	k: 5336	n:40000
KS ci ratio: 1.084570e-01	ci left: 2.990726e-02	ci right 3.336117e-02	k: 1264	n:40000
HNRNPL   40000 perm   8 sec   (5177 perm/sec)   p_kst 3.160000e-02   p_cons 1.334000e-01   p_joint 3.057500e-01

Joint ci ratio: 2.641090e-02	ci left: 3.017828e-01	ci right 3.098798e-01	k: 15291	n:50000
Cons ci ratio: 4.465079e-02	ci left: 1.305698e-01	ci right 1.365528e-01	k: 6677	n:50000
KS ci ratio: 9.711020e-02	ci left: 3.002533e-02	ci right 3.310937e-02	k: 1577	n:50000
HNRNPL   50000 perm   10 sec   (5039 perm/sec)   p_kst 3.154000e-02   p_cons 1.335400e-01   p_joint 3.058200e-01

Outputting figure to mutsig2_images.part000000000080/HNRNPL.2_1822_50000_0.03154_0.13354_0.30582.png
                gene_name: HNRNPL
               theta_stop: 0.097 
                    nperm: 50000 
                     p_ks: 0.032 
        ci_ks_bounds_left: 0.030 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 60 percent done.
HNRNPR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.132760e-02	ci left: 3.588357e-01	ci right 3.778410e-01	k: 3683	n:10000
Cons ci ratio: 3.393915e-02	ci left: 5.617312e-01	ci right 5.812271e-01	k: 5715	n:10000
KS ci ratio: 6.601149e-02	ci left: 2.520172e-01	ci right 2.693224e-01	k: 2606	n:10000
HNRNPR   10000 perm   2 sec   (6481 perm/sec)   p_kst 2.606000e-01   p_cons 5.715000e-01   p_joint 3.683000e-01

Outputting figure to mutsig2_images.part000000000080/HNRNPR.2_1951_10000_0.2606_0.5715_0.3683.png
                gene_name: HNRNPR
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 63 percent done.
HNRNPU
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.805087e-02	ci left: 5.049514e-01	ci right 5.246400e-01	k: 5148	n:10000
KS ci ratio: 1.291762e-02	ci left: 8.961077e-01	ci right 9.078569e-01	k: 9021	n:10000
HNRNPU   10000 perm   2 sec   (5880 perm/sec)   p_kst 9.021000e-01   p_cons 5.148000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000080/HNRNPU.2_2534_10000_0.9021_0.5148_1.png
                gene_name: HNRNPU
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
HNRNPUL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.102432e-03	ci left: 9.646769e-01	ci right 9.716469e-01	k: 9683	n:10000
Cons ci ratio: 4.463091e-02	ci left: 4.256523e-01	ci right 4.451853e-01	k: 4354	n:10000
KS ci ratio: 2.198857e-01	ci left: 2.740624e-02	ci right 3.427066e-02	k: 307	n:10000
HNRNPUL1   10000 perm   2 sec   (5629 perm/sec)   p_kst 3.070000e-02   p_cons 4.354000e-01   p_joint 9.683000e-01

Joint ci ratio: 1.381450e-01	ci left: 3.602079e-02	ci right 4.141438e-02	k: 773	n:20000
Cons ci ratio: 3.036442e-02	ci left: 4.475813e-01	ci right 4.614320e-01	k: 9090	n:20000
KS ci ratio: 1.606734e-01	ci left: 2.657390e-02	ci right 3.126439e-02	k: 577	n:20000
HNRNPUL1   20000 perm   4 sec   (5143 perm/sec)   p_kst 2.885000e-02   p_cons 4.545000e-01   p_joint 3.865000e-02

Joint ci ratio: 1.115033e-01	ci left: 3.735635e-02	ci right 4.180005e-02	k: 1186	n:30000
Cons ci ratio: 2.473988e-02	ci left: 4.499190e-01	ci right 4.612230e-01	k: 13667	n:30000
KS ci ratio: 1.300365e-01	ci left: 2.748520e-02	ci right 3.133998e-02	k: 881	n:30000
HNRNPUL1   30000 perm   6 sec   (4939 perm/sec)   p_kst 2.936667e-02   p_cons 4.555667e-01   p_joint 3.953333e-02

Joint ci ratio: 1.510491e-02	ci left: 6.226151e-01	ci right 6.321164e-01	k: 25095	n:40000
Cons ci ratio: 2.136601e-02	ci left: 4.520591e-01	ci right 4.618472e-01	k: 18278	n:40000
KS ci ratio: 1.129622e-01	ci left: 2.757178e-02	ci right 3.089703e-02	k: 1168	n:40000
HNRNPUL1   40000 perm   8 sec   (4797 perm/sec)   p_kst 2.920000e-02   p_cons 4.569500e-01   p_joint 6.273750e-01

Joint ci ratio: 6.495218e-02	ci left: 6.569033e-02	ci right 7.012000e-02	k: 3394	n:50000
Cons ci ratio: 1.910165e-02	ci left: 4.528061e-01	ci right 4.615589e-01	k: 22859	n:50000
KS ci ratio: 1.013676e-01	ci left: 2.756604e-02	ci right 3.052897e-02	k: 1451	n:50000
HNRNPUL1   50000 perm   11 sec   (4686 perm/sec)   p_kst 2.902000e-02   p_cons 4.571800e-01   p_joint 6.788000e-02

Joint ci ratio: 7.938656e-02	ci left: 3.749764e-02	ci right 4.061381e-02	k: 2342	n:60000
Cons ci ratio: 1.745900e-02	ci left: 4.525749e-01	ci right 4.605627e-01	k: 27394	n:60000
KS ci ratio: 9.332194e-02	ci left: 2.723195e-02	ci right 2.991391e-02	k: 1713	n:60000
HNRNPUL1   60000 perm   13 sec   (4586 perm/sec)   p_kst 2.855000e-02   p_cons 4.565667e-01   p_joint 3.903333e-02

Outputting figure to mutsig2_images.part000000000080/HNRNPUL1.2_2631_60000_0.02855_0.45657_0.039033.png
                gene_name: HNRNPUL1
               theta_stop: 0.093 
                    nperm: 60000 
                     p_ks: 0.029 
        ci_ks_bounds_left: 0.027 
       ci_ks_bounds_right: 0.030 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.039 
     ci_joint_bounds_left: 0.037 
    ci_joint_bounds_right: 0.041 

Current progress: 67 percent done.
HOMER3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.262613e-02	ci left: 2.726011e-01	ci right 2.903264e-01	k: 2814	n:10000
KS ci ratio: 3.543881e-02	ci left: 5.403863e-01	ci right 5.599845e-01	k: 5502	n:10000
HOMER3   10000 perm   2 sec   (6630 perm/sec)   p_kst 5.502000e-01   p_cons 2.814000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000080/HOMER3.2_1122_10000_0.5502_0.2814_1.png
                gene_name: HOMER3
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
HOPX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.004015e-02	ci left: 3.706717e-01	ci right 3.897981e-01	k: 3802	n:10000
Cons ci ratio: 7.844707e-02	ci left: 1.919029e-01	ci right 2.076724e-01	k: 1997	n:10000
KS ci ratio: 5.112967e-02	ci left: 3.606257e-01	ci right 3.796501e-01	k: 3701	n:10000
HOPX   10000 perm   1 sec   (7228 perm/sec)   p_kst 3.701000e-01   p_cons 1.997000e-01   p_joint 3.802000e-01

Outputting figure to mutsig2_images.part000000000080/HOPX.2_422_10000_0.3701_0.1997_0.3802.png
                gene_name: HOPX
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 72 percent done.
HOXA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.746257e-03	ci left: 9.585892e-01	ci right 9.661384e-01	k: 9625	n:10000
KS ci ratio: 4.250783e-02	ci left: 4.496954e-01	ci right 4.693282e-01	k: 4595	n:10000
HOXA1   10000 perm   1 sec   (6993 perm/sec)   p_kst 4.595000e-01   p_cons 9.625000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000080/HOXA1.2_1016_10000_0.4595_0.9625_1.png
                gene_name: HOXA1
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 74 percent done.
HOXA10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.429240e-02	ci left: 2.622072e-01	ci right 2.797264e-01	k: 2709	n:10000
Cons ci ratio: 1.771017e-01	ci left: 4.255135e-02	ci right 5.091525e-02	k: 466	n:10000
KS ci ratio: 8.377591e-03	ci left: 9.522126e-01	ci right 9.603189e-01	k: 9564	n:10000
HOXA10   10000 perm   2 sec   (6612 perm/sec)   p_kst 9.564000e-01   p_cons 4.660000e-02   p_joint 2.709000e-01

Joint ci ratio: 4.902949e-02	ci left: 2.362258e-01	ci right 2.481492e-01	k: 4843	n:20000
Cons ci ratio: 1.270263e-01	ci left: 4.255610e-02	ci right 4.837698e-02	k: 908	n:20000
KS ci ratio: 6.054571e-03	ci left: 9.515200e-01	ci right 9.573469e-01	k: 19090	n:20000
HOXA10   20000 perm   3 sec   (5848 perm/sec)   p_kst 9.545000e-01   p_cons 4.540000e-02   p_joint 2.421500e-01

Joint ci ratio: 3.400604e-02	ci left: 3.017164e-01	ci right 3.121876e-01	k: 9208	n:30000
Cons ci ratio: 1.039371e-01	ci left: 4.290919e-02	ci right 4.764604e-02	k: 1357	n:30000
KS ci ratio: 4.959834e-03	ci left: 9.517734e-01	ci right 9.565382e-01	k: 28626	n:30000
HOXA10   30000 perm   5 sec   (5467 perm/sec)   p_kst 9.542000e-01   p_cons 4.523333e-02   p_joint 3.069333e-01

Joint ci ratio: 3.408439e-02	ci left: 2.442461e-01	ci right 2.527404e-01	k: 9939	n:40000
Cons ci ratio: 9.018656e-02	ci left: 4.306243e-02	ci right 4.715394e-02	k: 1803	n:40000
KS ci ratio: 4.277806e-03	ci left: 9.524631e-01	ci right 9.565706e-01	k: 38182	n:40000
HOXA10   40000 perm   8 sec   (5293 perm/sec)   p_kst 9.545500e-01   p_cons 4.507500e-02   p_joint 2.484750e-01

Outputting figure to mutsig2_images.part000000000080/HOXA10.2_1255_40000_0.95455_0.045075_0.24848.png
                gene_name: HOXA10
               theta_stop: 0.090 
                    nperm: 40000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.045 
      ci_cons_bounds_left: 0.043 
     ci_cons_bounds_right: 0.047 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 77 percent done.
HOXA7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.447185e-02	ci left: 2.611186e-01	ci right 2.786156e-01	k: 2698	n:10000
Cons ci ratio: 1.148091e-01	ci left: 9.837525e-02	ci right 1.104563e-01	k: 1043	n:10000
KS ci ratio: 3.347720e-02	ci left: 5.684492e-01	ci right 5.879053e-01	k: 5782	n:10000
HOXA7   10000 perm   1 sec   (6884 perm/sec)   p_kst 5.782000e-01   p_cons 1.043000e-01   p_joint 2.698000e-01

Joint ci ratio: 5.546248e-02	ci left: 1.942774e-01	ci right 2.054100e-01	k: 3996	n:20000
Cons ci ratio: 8.060316e-02	ci left: 1.014715e-01	ci right 1.100435e-01	k: 2114	n:20000
KS ci ratio: 2.375838e-02	ci left: 5.695663e-01	ci right 5.833115e-01	k: 11529	n:20000
HOXA7   20000 perm   3 sec   (6093 perm/sec)   p_kst 5.764500e-01   p_cons 1.057000e-01   p_joint 1.998000e-01

Outputting figure to mutsig2_images.part000000000080/HOXA7.2_701_20000_0.57645_0.1057_0.1998.png
                gene_name: HOXA7
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 79 percent done.
HOXB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.252572e-02	ci left: 5.824925e-01	ci right 6.018537e-01	k: 5922	n:10000
Cons ci ratio: 1.413942e-03	ci left: 9.979048e-01	ci right 9.993798e-01	k: 9988	n:10000
KS ci ratio: 9.639384e-02	ci left: 1.350178e-01	ci right 1.487915e-01	k: 1418	n:10000
HOXB1   10000 perm   2 sec   (6510 perm/sec)   p_kst 1.418000e-01   p_cons 9.988000e-01   p_joint 5.922000e-01

Outputting figure to mutsig2_images.part000000000080/HOXB1.2_914_10000_0.1418_0.9988_0.5922.png
                gene_name: HOXB1
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 81 percent done.
HOXB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.779552e-02	ci left: 6.560548e-01	ci right 6.746488e-01	k: 6654	n:10000
Cons ci ratio: 1.300507e-03	ci left: 9.981617e-01	ci right 9.995204e-01	k: 9990	n:10000
KS ci ratio: 1.223415e-01	ci left: 8.737675e-02	ci right 9.886154e-02	k: 930	n:10000
HOXB3   10000 perm   2 sec   (6216 perm/sec)   p_kst 9.300000e-02   p_cons 9.990000e-01   p_joint 6.654000e-01

Joint ci ratio: 2.387778e-02	ci left: 5.671114e-01	ci right 5.808670e-01	k: 11480	n:20000
Cons ci ratio: 1.209223e-03	ci left: 9.974509e-01	ci right 9.986971e-01	k: 19963	n:20000
KS ci ratio: 8.658713e-02	ci left: 8.891121e-02	ci right 9.700757e-02	k: 1858	n:20000
HOXB3   20000 perm   4 sec   (5529 perm/sec)   p_kst 9.290000e-02   p_cons 9.981500e-01   p_joint 5.740000e-01

Outputting figure to mutsig2_images.part000000000080/HOXB3.2_1304_20000_0.0929_0.99815_0.574.png
                gene_name: HOXB3
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.093 
        ci_ks_bounds_left: 0.089 
       ci_ks_bounds_right: 0.097 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.58 

Current progress: 84 percent done.
HOXB7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.882593e-02	ci left: 8.048110e-01	ci right 8.202065e-01	k: 8126	n:10000
Cons ci ratio: 4.538307e-02	ci left: 4.174770e-01	ci right 4.369654e-01	k: 4272	n:10000
KS ci ratio: 2.029037e-02	ci left: 7.805653e-01	ci right 7.966662e-01	k: 7887	n:10000
HOXB7   10000 perm   1 sec   (6885 perm/sec)   p_kst 7.887000e-01   p_cons 4.272000e-01   p_joint 8.126000e-01

Outputting figure to mutsig2_images.part000000000080/HOXB7.2_662_10000_0.7887_0.4272_0.8126.png
                gene_name: HOXB7
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 86 percent done.
HOXB9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.254871e-02	ci left: 1.763499e-01	ci right 1.916346e-01	k: 1839	n:10000
Cons ci ratio: 6.074508e-02	ci left: 2.849825e-01	ci right 3.029377e-01	k: 2939	n:10000
KS ci ratio: 8.519871e-02	ci left: 1.672051e-01	ci right 1.821849e-01	k: 1746	n:10000
HOXB9   10000 perm   1 sec   (6811 perm/sec)   p_kst 1.746000e-01   p_cons 2.939000e-01   p_joint 1.839000e-01

Outputting figure to mutsig2_images.part000000000080/HOXB9.2_761_10000_0.1746_0.2939_0.1839.png
                gene_name: HOXB9
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 88 percent done.
HOXC11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.112712e-01	ci left: 1.042243e-01	ci right 1.166037e-01	k: 1103	n:10000
Cons ci ratio: 3.016730e-02	ci left: 6.184406e-01	ci right 6.374848e-01	k: 6280	n:10000
KS ci ratio: 1.805768e-01	ci left: 4.092429e-02	ci right 4.914339e-02	k: 449	n:10000
HOXC11   10000 perm   1 sec   (6708 perm/sec)   p_kst 4.490000e-02   p_cons 6.280000e-01   p_joint 1.103000e-01

Joint ci ratio: 4.332137e-03	ci left: 9.739920e-01	ci right 9.782680e-01	k: 19524	n:20000
Cons ci ratio: 2.132795e-02	ci left: 6.213585e-01	ci right 6.348042e-01	k: 12562	n:20000
KS ci ratio: 1.269532e-01	ci left: 4.260458e-02	ci right 4.842848e-02	k: 909	n:20000
HOXC11   20000 perm   3 sec   (5882 perm/sec)   p_kst 4.545000e-02   p_cons 6.281000e-01   p_joint 9.762000e-01

Joint ci ratio: 3.583895e-03	ci left: 9.737562e-01	ci right 9.772842e-01	k: 29267	n:30000
Cons ci ratio: 1.744555e-02	ci left: 6.217663e-01	ci right 6.327424e-01	k: 18818	n:30000
KS ci ratio: 1.041381e-01	ci left: 4.274667e-02	ci right 4.747526e-02	k: 1352	n:30000
HOXC11   30000 perm   5 sec   (5590 perm/sec)   p_kst 4.506667e-02   p_cons 6.272667e-01   p_joint 9.755667e-01

Joint ci ratio: 3.127030e-03	ci left: 9.736285e-01	ci right 9.767019e-01	k: 39008	n:40000
Cons ci ratio: 1.510895e-02	ci left: 6.224898e-01	ci right 6.319917e-01	k: 25090	n:40000
KS ci ratio: 9.016040e-02	ci left: 4.308689e-02	ci right 4.717947e-02	k: 1804	n:40000
HOXC11   40000 perm   7 sec   (5405 perm/sec)   p_kst 4.510000e-02   p_cons 6.272500e-01   p_joint 9.752000e-01

Outputting figure to mutsig2_images.part000000000080/HOXC11.2_923_40000_0.0451_0.62725_0.9752.png
                gene_name: HOXC11
               theta_stop: 0.090 
                    nperm: 40000 
                     p_ks: 0.045 
        ci_ks_bounds_left: 0.043 
       ci_ks_bounds_right: 0.047 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 91 percent done.
HOXC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.086197e-02	ci left: 6.076906e-01	ci right 6.268410e-01	k: 6173	n:10000
KS ci ratio: 3.129460e-02	ci left: 6.010623e-01	ci right 6.202732e-01	k: 6107	n:10000
HOXC5   10000 perm   1 sec   (6966 perm/sec)   p_kst 6.107000e-01   p_cons 6.173000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000080/HOXC5.2_677_10000_0.6107_0.6173_1.png
                gene_name: HOXC5
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
HOXC6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.440563e-02	ci left: 5.550151e-01	ci right 5.745471e-01	k: 5648	n:10000
KS ci ratio: 1.885064e-02	ci left: 8.044048e-01	ci right 8.198129e-01	k: 8122	n:10000
HOXC6   10000 perm   1 sec   (6891 perm/sec)   p_kst 8.122000e-01   p_cons 5.648000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000080/HOXC6.2_716_10000_0.8122_0.5648_1.png
                gene_name: HOXC6
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
HOXD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.200647e-02	ci left: 4.555849e-01	ci right 4.752352e-01	k: 4654	n:10000
KS ci ratio: 2.113385e-02	ci left: 7.664836e-01	ci right 7.829561e-01	k: 7748	n:10000
HOXD4   10000 perm   1 sec   (6875 perm/sec)   p_kst 7.748000e-01   p_cons 4.654000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000080/HOXD4.2_776_10000_0.7748_0.4654_1.png
                gene_name: HOXD4
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
HOXD9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.564880e-02	ci left: 6.911127e-01	ci right 7.091706e-01	k: 7002	n:10000
Cons ci ratio: 2.870566e-02	ci left: 6.414642e-01	ci right 6.602478e-01	k: 6509	n:10000
KS ci ratio: 7.750296e-02	ci left: 1.957449e-01	ci right 2.116281e-01	k: 2036	n:10000
HOXD9   10000 perm   2 sec   (6570 perm/sec)   p_kst 2.036000e-01   p_cons 6.509000e-01   p_joint 7.002000e-01

Outputting figure to mutsig2_images.part000000000080/HOXD9.2_1067_10000_0.2036_0.6509_0.7002.png
                gene_name: HOXD9
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000080
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 80 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1708>
Subject: Job 8004167: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1708>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000081> was used as the working directory.
Started at Sun Nov 11 17:04:01 2012
Results reported at Sun Nov 11 20:02:26 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000081.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000081.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 81  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000081.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  17885.28 sec.
    Max Memory :      4660 MB
    Max Swap   :      7112 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
81
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 81
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 81: processing genes 7239 - 7328
Calculating significance of each gene.
Using projection method.
7239	HPCAL4	1
7240	HPD	7.423659e-01
7241	HPDL	7.317039e-01
7242	HPGD	1
7243	HPGDS	1
7244	HPN	7.165012e-01
7245	HPR	7.129016e-01
7246	HPRT1	4.284530e-01
7247	HPS1	8.867551e-01
7248	HPS3	9.624864e-01
7249	HPS4	6.225511e-01
7250	HPS5	7.812279e-01
7251	HPS6	8.600524e-01
7252	HPSE	2.627890e-01
7253	HPSE2	1
7254	HPX	1
7255	HR	6.900479e-01
7256	HRAS	8.094964e-03
7257	HRASLS	1.042308e-01
7258	HRASLS2	5.146292e-01
7259	HRASLS5	2.869525e-01
7260	HRC	6.355828e-01
7261	HRCT1	3.475550e-01
7262	HRG	5.850331e-01
7263	HRH1	8.311055e-01
7264	HRH2	7.181500e-01
7265	HRH3	7.667508e-01
7266	HRH4	7.724470e-02
7267	HRNR	9.252172e-01
7268	HRSP12	1
7269	HS1BP3	3.666738e-01
7270	HS2ST1	1
7271	HS3ST1	1
7272	HS3ST2	2.402766e-01
7273	HS3ST3A1	6.901890e-01
7274	HS3ST3B1	1
7275	HS3ST4	3.386724e-01
7276	HS3ST5	6.478782e-02
7277	HS3ST6	1
7278	HS6ST1	1.335291e-02
7279	HS6ST2	1
7280	HS6ST3	6.191718e-01
7281	HSBP1	1
7282	HSCB	1.047680e-01
7283	HSD11B1	1.422412e-01
7284	HSD11B1L	1
7285	HSD11B2	7.525443e-01
7286	HSD17B1	4.482025e-01
7287	HSD17B10	1
7288	HSD17B11	3.903008e-01
7289	HSD17B12	2.501478e-01
7290	HSD17B13	6.968690e-01
7291	HSD17B14	1
7292	HSD17B2	1
7293	HSD17B3	1
7294	HSD17B4	9.568377e-01
7295	HSD17B6	5.537403e-01
7296	HSD17B7	6.120732e-01
7297	HSD17B8	1
7298	HSD3B1	2.779890e-02
7299	HSD3B2	7.956352e-01
7300	HSD3B7	1
7301	HSDL1	1
7302	HSDL2	6.503367e-01
7303	HSF1	8.732608e-01
7304	HSF2	1
7305	HSF2BP	1
7306	HSF4	7.839112e-01
7307	HSF5	1
7308	HSH2D	1
7309	HSP90AA1	5.807954e-01
7310	HSP90AB1	5.191860e-01
7311	HSP90B1	6.841508e-01
7312	HSPA12A	8.265163e-01
7313	HSPA12B	5.412716e-01
7314	HSPA13	7.697820e-01
7315	HSPA14	1
7316	HSPA1A	1
7317	HSPA1B	1
7318	HSPA1L	1
7319	HSPA2	4.719881e-01
7320	HSPA4	5.612909e-01
7321	HSPA4L	5.675097e-01
7322	HSPA5	2.031613e-01
7323	HSPA6	6.556511e-01
7324	HSPA8	3.858242e-01
7325	HSPA9	5.640468e-01
7326	HSPB1	1
7327	HSPB11	4.439628e-01
7328	HSPB2	3.739990e-01
Done

Running MutSig 2:
Scatter job 81: processing genes 7239 - 7328
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
HRNR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.910384e-01	ci left: 3.652992e-02	ci right 4.434069e-02	k: 403	n:10000
Cons ci ratio: 9.434992e-02	ci left: 1.402112e-01	ci right 1.541950e-01	k: 1471	n:10000
KS ci ratio: 1.585526e-01	ci left: 5.301669e-02	ci right 6.224312e-02	k: 575	n:10000
HRNR   10000 perm   3 sec   (3299 perm/sec)   p_kst 5.750000e-02   p_cons 1.471000e-01   p_joint 4.030000e-02

Joint ci ratio: 9.616914e-02	ci left: 7.299974e-02	ci right 8.042388e-02	k: 1533	n:20000
Cons ci ratio: 6.796664e-02	ci left: 1.377319e-01	ci right 1.474723e-01	k: 2851	n:20000
KS ci ratio: 1.101510e-01	ci left: 5.626075e-02	ci right 6.286802e-02	k: 1190	n:20000
HRNR   20000 perm   8 sec   (2393 perm/sec)   p_kst 5.950000e-02   p_cons 1.425500e-01   p_joint 7.665000e-02

Joint ci ratio: 9.120750e-02	ci left: 5.534861e-02	ci right 6.067072e-02	k: 1739	n:30000
Cons ci ratio: 5.439473e-02	ci left: 1.435379e-01	ci right 1.515971e-01	k: 4426	n:30000
KS ci ratio: 8.939448e-02	ci left: 5.753446e-02	ci right 6.295109e-02	k: 1806	n:30000
HRNR   30000 perm   12 sec   (2492 perm/sec)   p_kst 6.020000e-02   p_cons 1.475333e-01   p_joint 5.796667e-02

Outputting figure to mutsig2_images.part000000000081/HRNR.21_8561_30000_0.0602_0.14753_0.057967.png
                gene_name: HRNR
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.060 
        ci_ks_bounds_left: 0.058 
       ci_ks_bounds_right: 0.063 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.058 
     ci_joint_bounds_left: 0.055 
    ci_joint_bounds_right: 0.061 

Current progress: 3 percent done.
HS6ST1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 4.772737e-01	ci left: 5.108009e-03	ci right 8.389267e-03	k: 66	n:10000
KS ci ratio: 1.959510e+00	ci left: 6.187149e-05	ci right 8.764745e-04	k: 3	n:10000
HS6ST1   10000 perm   2 sec   (5631 perm/sec)   p_kst 3.000000e-04   p_cons 6.600000e-03   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 3.495094e-01	ci left: 5.159405e-03	ci right 7.387804e-03	k: 124	n:20000
KS ci ratio: 1.481324e+00	ci left: 1.101024e-04	ci right 6.528585e-04	k: 6	n:20000
HS6ST1   20000 perm   4 sec   (5032 perm/sec)   p_kst 3.000000e-04   p_cons 6.200000e-03   p_joint 0

Joint ci ratio: 4.819796e-01	ci left: 1.672573e-03	ci right 2.760773e-03	k: 65	n:30000
Cons ci ratio: 2.783654e-01	ci left: 5.653057e-03	ci right 7.511107e-03	k: 196	n:30000
KS ci ratio: 1.239386e+00	ci left: 1.371880e-04	ci right 5.694167e-04	k: 9	n:30000
HS6ST1   30000 perm   6 sec   (4805 perm/sec)   p_kst 3.000000e-04   p_cons 6.533333e-03   p_joint 2.166667e-03

Joint ci ratio: 3.666135e-01	ci left: 2.328750e-03	ci right 3.395458e-03	k: 113	n:40000
Cons ci ratio: 2.258478e-01	ci left: 6.630713e-03	ci right 8.341955e-03	k: 298	n:40000
KS ci ratio: 1.181747e+00	ci left: 1.198910e-04	ci right 4.597107e-04	k: 10	n:40000
HS6ST1   40000 perm   8 sec   (4718 perm/sec)   p_kst 2.500000e-04   p_cons 7.450000e-03   p_joint 2.825000e-03

Joint ci ratio: 6.274512e-01	ci left: 5.378756e-04	ci right 1.043012e-03	k: 38	n:50000
Cons ci ratio: 1.990091e-01	ci left: 6.933501e-03	ci right 8.484475e-03	k: 384	n:50000
KS ci ratio: 1.047507e+00	ci left: 1.384461e-04	ci right 4.445669e-04	k: 13	n:50000
HS6ST1   50000 perm   11 sec   (4629 perm/sec)   p_kst 2.600000e-04   p_cons 7.680000e-03   p_joint 7.600000e-04

Joint ci ratio: 5.597666e-01	ci left: 5.899139e-04	ci right 1.060546e-03	k: 48	n:60000
Cons ci ratio: 1.795285e-01	ci left: 7.175327e-03	ci right 8.606222e-03	k: 472	n:60000
KS ci ratio: 9.505970e-01	ci left: 1.524305e-04	ci right 4.330139e-04	k: 16	n:60000
HS6ST1   60000 perm   13 sec   (4555 perm/sec)   p_kst 2.666667e-04   p_cons 7.866667e-03   p_joint 8.000000e-04

Joint ci ratio: 5.332348e-01	ci left: 5.672018e-04	ci right 9.902460e-04	k: 53	n:70000
Cons ci ratio: 1.661860e-01	ci left: 7.230099e-03	ci right 8.554040e-03	k: 551	n:70000
KS ci ratio: 9.238275e-01	ci left: 1.414794e-04	ci right 3.888094e-04	k: 17	n:70000
HS6ST1   70000 perm   16 sec   (4485 perm/sec)   p_kst 2.428571e-04   p_cons 7.871429e-03   p_joint 7.571429e-04

Joint ci ratio: 5.236454e-01	ci left: 5.179598e-04	ci right 8.947830e-04	k: 55	n:80000
Cons ci ratio: 1.555594e-01	ci left: 7.262125e-03	ci right 8.498964e-03	k: 629	n:80000
KS ci ratio: 8.764236e-01	ci left: 1.429964e-04	ci right 3.708609e-04	k: 19	n:80000
HS6ST1   80000 perm   18 sec   (4357 perm/sec)   p_kst 2.375000e-04   p_cons 7.862500e-03   p_joint 6.875000e-04

Joint ci ratio: 5.058983e-01	ci left: 4.990756e-04	ci right 8.455385e-04	k: 59	n:90000
Cons ci ratio: 1.472662e-01	ci left: 7.235610e-03	ci right 8.396451e-03	k: 702	n:90000
KS ci ratio: 8.764364e-01	ci left: 1.271073e-04	ci right 3.296566e-04	k: 19	n:90000
HS6ST1   90000 perm   21 sec   (4303 perm/sec)   p_kst 2.111111e-04   p_cons 7.800000e-03   p_joint 6.555556e-04

Joint ci ratio: 4.752058e-01	ci left: 5.192773e-04	ci right 8.507994e-04	k: 67	n:100000
Cons ci ratio: 1.409984e-01	ci left: 7.128947e-03	ci right 8.219901e-03	k: 766	n:100000
KS ci ratio: 8.000666e-01	ci left: 1.458057e-04	ci right 3.450931e-04	k: 23	n:100000
HS6ST1   100000 perm   24 sec   (4244 perm/sec)   p_kst 2.300000e-04   p_cons 7.660000e-03   p_joint 6.700000e-04

Joint ci ratio: 4.752207e-01	ci left: 4.720673e-04	ci right 7.734603e-04	k: 67	n:110000
Cons ci ratio: 1.344930e-01	ci left: 7.147972e-03	ci right 8.187330e-03	k: 842	n:110000
KS ci ratio: 7.686809e-01	ci left: 1.470842e-04	ci right 3.354812e-04	k: 25	n:110000
HS6ST1   110000 perm   27 sec   (4122 perm/sec)   p_kst 2.272727e-04   p_cons 7.654545e-03   p_joint 6.090909e-04

Joint ci ratio: 4.618359e-01	ci left: 4.621246e-04	ci right 7.462493e-04	k: 71	n:120000
Cons ci ratio: 1.289537e-01	ci left: 7.148658e-03	ci right 8.142025e-03	k: 916	n:120000
KS ci ratio: 7.543163e-01	ci left: 1.415386e-04	ci right 3.174509e-04	k: 26	n:120000
HS6ST1   120000 perm   29 sec   (4069 perm/sec)   p_kst 2.166667e-04   p_cons 7.633333e-03   p_joint 5.916667e-04

Joint ci ratio: 4.465914e-01	ci left: 4.606372e-04	ci right 7.316795e-04	k: 76	n:130000
Cons ci ratio: 1.244907e-01	ci left: 7.097798e-03	ci right 8.047443e-03	k: 983	n:130000
KS ci ratio: 7.156055e-01	ci left: 1.494030e-04	ci right 3.203601e-04	k: 29	n:130000
HS6ST1   130000 perm   32 sec   (4017 perm/sec)   p_kst 2.230769e-04   p_cons 7.561538e-03   p_joint 5.846154e-04

Joint ci ratio: 5.908673e-01	ci left: 2.222894e-04	ci right 4.136974e-04	k: 43	n:140000
Cons ci ratio: 1.204611e-01	ci left: 7.054713e-03	ci right 7.965863e-03	k: 1050	n:140000
KS ci ratio: 7.039723e-01	ci left: 1.445822e-04	ci right 3.058922e-04	k: 30	n:140000
HS6ST1   140000 perm   35 sec   (3964 perm/sec)   p_kst 2.142857e-04   p_cons 7.500000e-03   p_joint 3.071429e-04

Joint ci ratio: 5.842695e-01	ci left: 2.131443e-04	ci right 3.937665e-04	k: 44	n:150000
Cons ci ratio: 1.166415e-01	ci left: 7.037224e-03	ci right 7.915308e-03	k: 1120	n:150000
KS ci ratio: 7.039777e-01	ci left: 1.349431e-04	ci right 2.855002e-04	k: 30	n:150000
HS6ST1   150000 perm   38 sec   (3913 perm/sec)   p_kst 2.000000e-04   p_cons 7.466667e-03   p_joint 2.933333e-04

Joint ci ratio: 5.977122e-01	ci left: 1.891933e-04	ci right 3.548074e-04	k: 42	n:160000
Cons ci ratio: 1.132114e-01	ci left: 7.016247e-03	ci right 7.864248e-03	k: 1189	n:160000
KS ci ratio: 7.039824e-01	ci left: 1.265089e-04	ci right 2.676572e-04	k: 30	n:160000
HS6ST1   160000 perm   41 sec   (3864 perm/sec)   p_kst 1.875000e-04   p_cons 7.431250e-03   p_joint 2.625000e-04

Joint ci ratio: 6.047926e-01	ci left: 1.730778e-04	ci right 3.271690e-04	k: 41	n:170000
Cons ci ratio: 1.095859e-01	ci left: 7.061012e-03	ci right 7.885330e-03	k: 1269	n:170000
KS ci ratio: 6.625308e-01	ci left: 1.385097e-04	ci right 2.794688e-04	k: 34	n:170000
HS6ST1   170000 perm   45 sec   (3815 perm/sec)   p_kst 2.000000e-04   p_cons 7.464706e-03   p_joint 2.411765e-04

Joint ci ratio: 5.977213e-01	ci left: 1.681712e-04	ci right 3.153859e-04	k: 42	n:180000
Cons ci ratio: 1.063274e-01	ci left: 7.095780e-03	ci right 7.897983e-03	k: 1348	n:180000
KS ci ratio: 6.443760e-01	ci left: 1.400813e-04	ci right 2.768737e-04	k: 36	n:180000
HS6ST1   180000 perm   48 sec   (3766 perm/sec)   p_kst 2.000000e-04   p_cons 7.488889e-03   p_joint 2.333333e-04

Joint ci ratio: 5.842884e-01	ci left: 1.682705e-04	ci right 3.108716e-04	k: 44	n:190000
Cons ci ratio: 1.039316e-01	ci left: 7.045168e-03	ci right 7.822606e-03	k: 1411	n:190000
KS ci ratio: 6.276363e-01	ci left: 1.415357e-04	ci right 2.745054e-04	k: 38	n:190000
HS6ST1   190000 perm   51 sec   (3718 perm/sec)   p_kst 2.000000e-04   p_cons 7.426316e-03   p_joint 2.315789e-04

Joint ci ratio: 5.717221e-01	ci left: 1.683937e-04	ci right 3.067760e-04	k: 46	n:200000
Cons ci ratio: 1.012080e-01	ci left: 7.068037e-03	ci right 7.826344e-03	k: 1488	n:200000
KS ci ratio: 6.121369e-01	ci left: 1.428867e-04	ci right 2.723334e-04	k: 40	n:200000
HS6ST1   200000 perm   54 sec   (3671 perm/sec)   p_kst 2.000000e-04   p_cons 7.440000e-03   p_joint 2.300000e-04

Joint ci ratio: 5.657373e-01	ci left: 1.644513e-04	ci right 2.976082e-04	k: 47	n:210000
Cons ci ratio: 9.821507e-02	ci left: 7.158651e-03	ci right 7.902658e-03	k: 1580	n:210000
KS ci ratio: 6.121399e-01	ci left: 1.360824e-04	ci right 2.593656e-04	k: 40	n:210000
HS6ST1   210000 perm   58 sec   (3625 perm/sec)   p_kst 1.904762e-04   p_cons 7.523810e-03   p_joint 2.238095e-04

Joint ci ratio: 5.599364e-01	ci left: 1.608743e-04	ci right 2.892672e-04	k: 48	n:220000
Cons ci ratio: 9.614094e-02	ci left: 7.139268e-03	ci right 7.864708e-03	k: 1649	n:220000
KS ci ratio: 6.121427e-01	ci left: 1.298967e-04	ci right 2.475766e-04	k: 40	n:220000
HS6ST1   220000 perm   61 sec   (3580 perm/sec)   p_kst 1.818182e-04   p_cons 7.495455e-03   p_joint 2.181818e-04

Joint ci ratio: 5.488477e-01	ci left: 1.613562e-04	ci right 2.865934e-04	k: 50	n:230000
Cons ci ratio: 9.400026e-02	ci left: 7.151445e-03	ci right 7.861051e-03	k: 1725	n:230000
KS ci ratio: 5.977372e-01	ci left: 1.316114e-04	ci right 2.468260e-04	k: 42	n:230000
HS6ST1   230000 perm   65 sec   (3535 perm/sec)   p_kst 1.826087e-04   p_cons 7.500000e-03   p_joint 2.173913e-04

Joint ci ratio: 5.383928e-01	ci left: 1.618211e-04	ci right 2.841199e-04	k: 52	n:240000
Cons ci ratio: 9.220292e-02	ci left: 7.130201e-03	ci right 7.823440e-03	k: 1793	n:240000
KS ci ratio: 5.843031e-01	ci left: 1.332133e-04	ci right 2.461087e-04	k: 44	n:240000
HS6ST1   240000 perm   69 sec   (3492 perm/sec)   p_kst 1.833333e-04   p_cons 7.470833e-03   p_joint 2.166667e-04

Joint ci ratio: 5.333858e-01	ci left: 1.588065e-04	ci right 2.772922e-04	k: 53	n:250000
Cons ci ratio: 9.057843e-02	ci left: 7.099045e-03	ci right 7.776450e-03	k: 1858	n:250000
KS ci ratio: 5.843053e-01	ci left: 1.278847e-04	ci right 2.362647e-04	k: 44	n:250000
HS6ST1   250000 perm   73 sec   (3448 perm/sec)   p_kst 1.760000e-04   p_cons 7.432000e-03   p_joint 2.120000e-04

Joint ci ratio: 5.333880e-01	ci left: 1.526984e-04	ci right 2.666274e-04	k: 53	n:260000
Cons ci ratio: 8.894376e-02	ci left: 7.085430e-03	ci right 7.748699e-03	k: 1927	n:260000
KS ci ratio: 5.843074e-01	ci left: 1.229659e-04	ci right 2.271778e-04	k: 44	n:260000
HS6ST1   260000 perm   76 sec   (3403 perm/sec)   p_kst 1.692308e-04   p_cons 7.411538e-03   p_joint 2.038462e-04

Joint ci ratio: 5.333901e-01	ci left: 1.470427e-04	ci right 2.567526e-04	k: 53	n:270000
Cons ci ratio: 8.728450e-02	ci left: 7.091042e-03	ci right 7.741821e-03	k: 2001	n:270000
KS ci ratio: 5.843093e-01	ci left: 1.184116e-04	ci right 2.187641e-04	k: 44	n:270000
HS6ST1   270000 perm   80 sec   (3362 perm/sec)   p_kst 1.629630e-04   p_cons 7.411111e-03   p_joint 1.962963e-04

Joint ci ratio: 6.197610e-01	ci left: 9.904757e-05	ci right 1.904033e-04	k: 39	n:280000
Cons ci ratio: 8.573557e-02	ci left: 7.092864e-03	ci right 7.731681e-03	k: 2074	n:280000
KS ci ratio: 5.599500e-01	ci left: 1.264005e-04	ci right 2.272831e-04	k: 48	n:280000
HS6ST1   280000 perm   84 sec   (3314 perm/sec)   p_kst 1.714286e-04   p_cons 7.407143e-03   p_joint 1.392857e-04

Joint ci ratio: 6.121568e-01	ci left: 9.854172e-05	ci right 1.878182e-04	k: 40	n:290000
Cons ci ratio: 8.438510e-02	ci left: 7.074400e-03	ci right 7.701022e-03	k: 2141	n:290000
KS ci ratio: 5.488606e-01	ci left: 1.279715e-04	ci right 2.272999e-04	k: 50	n:290000
HS6ST1   290000 perm   89 sec   (3276 perm/sec)   p_kst 1.724138e-04   p_cons 7.382759e-03   p_joint 1.379310e-04

Joint ci ratio: 6.121583e-01	ci left: 9.525694e-05	ci right 1.815578e-04	k: 40	n:300000
Cons ci ratio: 8.296416e-02	ci left: 7.080092e-03	ci right 7.696148e-03	k: 2215	n:300000
KS ci ratio: 5.384049e-01	ci left: 1.294562e-04	ci right 2.272975e-04	k: 52	n:300000
HS6ST1   300000 perm   93 sec   (3239 perm/sec)   p_kst 1.733333e-04   p_cons 7.383333e-03   p_joint 1.333333e-04

Joint ci ratio: 6.048272e-01	ci left: 9.491229e-05	ci right 1.794188e-04	k: 41	n:310000
Cons ci ratio: 8.155887e-02	ci left: 7.094982e-03	ci right 7.701379e-03	k: 2292	n:310000
KS ci ratio: 5.285249e-01	ci left: 1.308622e-04	ci right 2.272788e-04	k: 54	n:310000
HS6ST1   310000 perm   97 sec   (3202 perm/sec)   p_kst 1.741935e-04   p_cons 7.393548e-03   p_joint 1.322581e-04

Joint ci ratio: 5.977533e-01	ci left: 9.459504e-05	ci right 1.774078e-04	k: 42	n:320000
Cons ci ratio: 8.041086e-02	ci left: 7.075333e-03	ci right 7.671140e-03	k: 2358	n:320000
KS ci ratio: 5.237854e-01	ci left: 1.294823e-04	ci right 2.237131e-04	k: 55	n:320000
HS6ST1   320000 perm   101 sec   (3167 perm/sec)   p_kst 1.718750e-04   p_cons 7.368750e-03   p_joint 1.312500e-04

Joint ci ratio: 5.843184e-01	ci left: 9.688182e-05	ci right 1.789897e-04	k: 44	n:330000
Cons ci ratio: 7.908036e-02	ci left: 7.098522e-03	ci right 7.685935e-03	k: 2438	n:330000
KS ci ratio: 5.102941e-01	ci left: 1.334627e-04	ci right 2.272016e-04	k: 58	n:330000
HS6ST1   330000 perm   105 sec   (3132 perm/sec)   p_kst 1.757576e-04   p_cons 7.387879e-03   p_joint 1.333333e-04

Joint ci ratio: 5.843196e-01	ci left: 9.403231e-05	ci right 1.737254e-04	k: 44	n:340000
Cons ci ratio: 7.801686e-02	ci left: 7.082928e-03	ci right 7.660810e-03	k: 2505	n:340000
KS ci ratio: 5.060244e-01	ci left: 1.321012e-04	ci right 2.238347e-04	k: 59	n:340000
HS6ST1   340000 perm   110 sec   (3097 perm/sec)   p_kst 1.735294e-04   p_cons 7.367647e-03   p_joint 1.294118e-04

Joint ci ratio: 5.843207e-01	ci left: 9.134563e-05	ci right 1.687619e-04	k: 44	n:350000
Cons ci ratio: 7.678498e-02	ci left: 7.107511e-03	ci right 7.677833e-03	k: 2586	n:350000
KS ci ratio: 4.977957e-01	ci left: 1.333173e-04	ci right 2.238717e-04	k: 61	n:350000
HS6ST1   350000 perm   114 sec   (3064 perm/sec)   p_kst 1.742857e-04   p_cons 7.388571e-03   p_joint 1.257143e-04

Joint ci ratio: 6.048330e-01	ci left: 8.172983e-05	ci right 1.545000e-04	k: 41	n:360000
Cons ci ratio: 7.570978e-02	ci left: 7.111717e-03	ci right 7.674034e-03	k: 2660	n:360000
KS ci ratio: 4.861716e-01	ci left: 1.369132e-04	ci right 2.270127e-04	k: 64	n:360000
HS6ST1   360000 perm   119 sec   (3033 perm/sec)   p_kst 1.777778e-04   p_cons 7.388889e-03   p_joint 1.138889e-04

Joint ci ratio: 5.977589e-01	ci left: 8.181174e-05	ci right 1.534342e-04	k: 42	n:370000
Cons ci ratio: 7.477499e-02	ci left: 7.097180e-03	ci right 7.651117e-03	k: 2727	n:370000
KS ci ratio: 4.788602e-01	ci left: 1.379604e-04	ci right 2.269355e-04	k: 66	n:370000
HS6ST1   370000 perm   123 sec   (3001 perm/sec)   p_kst 1.783784e-04   p_cons 7.370270e-03   p_joint 1.135135e-04

Joint ci ratio: 5.909272e-01	ci left: 8.189410e-05	ci right 1.524199e-04	k: 43	n:380000
Cons ci ratio: 7.362231e-02	ci left: 7.132534e-03	ci right 7.680281e-03	k: 2813	n:380000
KS ci ratio: 4.753267e-01	ci left: 1.366448e-04	ci right 2.239095e-04	k: 67	n:380000
HS6ST1   380000 perm   128 sec   (2965 perm/sec)   p_kst 1.763158e-04   p_cons 7.402632e-03   p_joint 1.131579e-04

Joint ci ratio: 5.779376e-01	ci left: 8.416354e-05	ci right 1.543907e-04	k: 45	n:390000
Cons ci ratio: 7.266030e-02	ci left: 7.138439e-03	ci right 7.679175e-03	k: 2888	n:390000
KS ci ratio: 4.651755e-01	ci left: 1.399217e-04	ci right 2.267659e-04	k: 70	n:390000
HS6ST1   390000 perm   133 sec   (2935 perm/sec)   p_kst 1.794872e-04   p_cons 7.405128e-03   p_joint 1.153846e-04

Joint ci ratio: 5.657686e-01	ci left: 8.633582e-05	ci right 1.562471e-04	k: 47	n:400000
Cons ci ratio: 7.180831e-02	ci left: 7.129361e-03	ci right 7.662812e-03	k: 2957	n:400000
KS ci ratio: 4.619343e-01	ci left: 1.386315e-04	ci right 2.238869e-04	k: 71	n:400000
HS6ST1   400000 perm   138 sec   (2900 perm/sec)   p_kst 1.775000e-04   p_cons 7.392500e-03   p_joint 1.175000e-04

Joint ci ratio: 5.657695e-01	ci left: 8.423004e-05	ci right 1.524362e-04	k: 47	n:410000
Cons ci ratio: 7.083252e-02	ci left: 7.151910e-03	ci right 7.679477e-03	k: 3039	n:410000
KS ci ratio: 4.619353e-01	ci left: 1.352502e-04	ci right 2.184264e-04	k: 71	n:410000
HS6ST1   410000 perm   143 sec   (2867 perm/sec)   p_kst 1.731707e-04   p_cons 7.412195e-03   p_joint 1.146341e-04

Joint ci ratio: 5.599667e-01	ci left: 8.426643e-05	ci right 1.515235e-04	k: 48	n:420000
Cons ci ratio: 6.996322e-02	ci left: 7.159394e-03	ci right 7.680769e-03	k: 3115	n:420000
KS ci ratio: 4.556501e-01	ci left: 1.362413e-04	ci right 2.185345e-04	k: 73	n:420000
HS6ST1   420000 perm   148 sec   (2835 perm/sec)   p_kst 1.738095e-04   p_cons 7.416667e-03   p_joint 1.142857e-04

Joint ci ratio: 5.599674e-01	ci left: 8.230672e-05	ci right 1.479997e-04	k: 48	n:430000
Cons ci ratio: 6.902719e-02	ci left: 7.187140e-03	ci right 7.703252e-03	k: 3200	n:430000
KS ci ratio: 4.556510e-01	ci left: 1.330729e-04	ci right 2.134524e-04	k: 73	n:430000
HS6ST1   430000 perm   153 sec   (2805 perm/sec)   p_kst 1.697674e-04   p_cons 7.441860e-03   p_joint 1.116279e-04

Joint ci ratio: 5.543396e-01	ci left: 8.238853e-05	ci right 1.472260e-04	k: 49	n:440000
Cons ci ratio: 6.806517e-02	ci left: 7.227074e-03	ci right 7.738535e-03	k: 3291	n:440000
KS ci ratio: 4.526035e-01	ci left: 1.320611e-04	ci right 2.111323e-04	k: 74	n:440000
HS6ST1   440000 perm   159 sec   (2775 perm/sec)   p_kst 1.681818e-04   p_cons 7.479545e-03   p_joint 1.113636e-04

Joint ci ratio: 3.563153e-01	ci left: 2.210980e-04	ci right 3.188596e-04	k: 120	n:450000
Cons ci ratio: 6.742397e-02	ci left: 7.204097e-03	ci right 7.708942e-03	k: 3354	n:450000
KS ci ratio: 4.438136e-01	ci left: 1.350405e-04	ci right 2.138550e-04	k: 77	n:450000
HS6ST1   450000 perm   164 sec   (2745 perm/sec)   p_kst 1.711111e-04   p_cons 7.453333e-03   p_joint 2.666667e-04

Joint ci ratio: 3.534069e-01	ci left: 2.202517e-04	ci right 3.166618e-04	k: 122	n:460000
Cons ci ratio: 6.664358e-02	ci left: 7.216348e-03	ci right 7.715972e-03	k: 3433	n:460000
KS ci ratio: 4.409961e-01	ci left: 1.340365e-04	ci right 2.116206e-04	k: 78	n:460000
HS6ST1   460000 perm   169 sec   (2716 perm/sec)   p_kst 1.695652e-04   p_cons 7.463043e-03   p_joint 2.652174e-04

Joint ci ratio: 3.491742e-01	ci left: 2.213853e-04	ci right 3.168682e-04	k: 125	n:470000
Cons ci ratio: 6.590858e-02	ci left: 7.223925e-03	ci right 7.718346e-03	k: 3510	n:470000
KS ci ratio: 4.355176e-01	ci left: 1.349704e-04	ci right 2.118401e-04	k: 80	n:470000
HS6ST1   470000 perm   175 sec   (2688 perm/sec)   p_kst 1.702128e-04   p_cons 7.468085e-03   p_joint 2.659574e-04

Joint ci ratio: 3.464358e-01	ci left: 2.205758e-04	ci right 3.147961e-04	k: 127	n:480000
Cons ci ratio: 6.530750e-02	ci left: 7.206619e-03	ci right 7.695188e-03	k: 3575	n:480000
KS ci ratio: 4.328542e-01	ci left: 1.340140e-04	ci right 2.097365e-04	k: 81	n:480000
HS6ST1   480000 perm   181 sec   (2658 perm/sec)   p_kst 1.687500e-04   p_cons 7.447917e-03   p_joint 2.645833e-04

Joint ci ratio: 3.424459e-01	ci left: 2.216672e-04	ci right 3.150216e-04	k: 130	n:490000
Cons ci ratio: 6.461538e-02	ci left: 7.214136e-03	ci right 7.697837e-03	k: 3652	n:490000
KS ci ratio: 4.276700e-01	ci left: 1.349186e-04	ci right 2.099773e-04	k: 83	n:490000
HS6ST1   490000 perm   186 sec   (2634 perm/sec)   p_kst 1.693878e-04   p_cons 7.453061e-03   p_joint 2.653061e-04

Joint ci ratio: 3.424468e-01	ci left: 2.172337e-04	ci right 3.087214e-04	k: 130	n:500000
Cons ci ratio: 6.404868e-02	ci left: 7.197760e-03	ci right 7.675974e-03	k: 3717	n:500000
KS ci ratio: 4.276707e-01	ci left: 1.322202e-04	ci right 2.057779e-04	k: 83	n:500000
HS6ST1   500000 perm   192 sec   (2610 perm/sec)   p_kst 1.660000e-04   p_cons 7.434000e-03   p_joint 2.600000e-04

Joint ci ratio: 3.385916e-01	ci left: 2.183537e-04	ci right 3.090514e-04	k: 133	n:510000
Cons ci ratio: 6.335339e-02	ci left: 7.214853e-03	ci right 7.688807e-03	k: 3799	n:510000
KS ci ratio: 4.226684e-01	ci left: 1.331295e-04	ci right 2.060819e-04	k: 85	n:510000
HS6ST1   510000 perm   197 sec   (2584 perm/sec)   p_kst 1.666667e-04   p_cons 7.449020e-03   p_joint 2.607843e-04

Joint ci ratio: 3.336480e-01	ci left: 2.211978e-04	ci right 3.114472e-04	k: 137	n:520000
Cons ci ratio: 6.273726e-02	ci left: 7.218063e-03	ci right 7.687450e-03	k: 3874	n:520000
KS ci ratio: 4.178376e-01	ci left: 1.340087e-04	ci right 2.063694e-04	k: 87	n:520000
HS6ST1   520000 perm   203 sec   (2561 perm/sec)   p_kst 1.673077e-04   p_cons 7.450000e-03   p_joint 2.634615e-04

Joint ci ratio: 3.360938e-01	ci left: 2.135678e-04	ci right 3.014813e-04	k: 135	n:530000
Cons ci ratio: 6.227393e-02	ci left: 7.189594e-03	ci right 7.653551e-03	k: 3932	n:530000
KS ci ratio: 4.154839e-01	ci left: 1.331692e-04	ci right 2.045592e-04	k: 88	n:530000
HS6ST1   530000 perm   209 sec   (2539 perm/sec)   p_kst 1.660377e-04   p_cons 7.418868e-03   p_joint 2.547170e-04

Joint ci ratio: 3.336496e-01	ci left: 2.130051e-04	ci right 2.999123e-04	k: 137	n:540000
Cons ci ratio: 6.158022e-02	ci left: 7.218719e-03	ci right 7.679182e-03	k: 4021	n:540000
KS ci ratio: 4.131695e-01	ci left: 1.323619e-04	ci right 2.028150e-04	k: 89	n:540000
HS6ST1   540000 perm   215 sec   (2514 perm/sec)   p_kst 1.648148e-04   p_cons 7.446296e-03   p_joint 2.537037e-04

Joint ci ratio: 3.312580e-01	ci left: 2.124652e-04	ci right 2.983982e-04	k: 139	n:550000
Cons ci ratio: 6.096898e-02	ci left: 7.232487e-03	ci right 7.689088e-03	k: 4102	n:550000
KS ci ratio: 4.131701e-01	ci left: 1.299552e-04	ci right 1.991275e-04	k: 89	n:550000
HS6ST1   550000 perm   221 sec   (2492 perm/sec)   p_kst 1.618182e-04   p_cons 7.458182e-03   p_joint 2.527273e-04

Joint ci ratio: 3.300817e-01	ci left: 2.103086e-04	ci right 2.950032e-04	k: 140	n:560000
Cons ci ratio: 6.046301e-02	ci left: 7.224678e-03	ci right 7.676868e-03	k: 4171	n:560000
KS ci ratio: 4.131707e-01	ci left: 1.276346e-04	ci right 1.955717e-04	k: 89	n:560000
HS6ST1   560000 perm   227 sec   (2468 perm/sec)   p_kst 1.589286e-04   p_cons 7.448214e-03   p_joint 2.500000e-04

Joint ci ratio: 3.289178e-01	ci left: 2.082282e-04	ci right 2.917267e-04	k: 141	n:570000
Cons ci ratio: 5.997655e-02	ci left: 7.215431e-03	ci right 7.663282e-03	k: 4239	n:570000
KS ci ratio: 4.108945e-01	ci left: 1.269679e-04	ci right 1.940759e-04	k: 90	n:570000
HS6ST1   570000 perm   233 sec   (2448 perm/sec)   p_kst 1.578947e-04   p_cons 7.436842e-03   p_joint 2.473684e-04

Joint ci ratio: 3.277662e-01	ci left: 2.062200e-04	ci right 2.885628e-04	k: 142	n:580000
Cons ci ratio: 5.948773e-02	ci left: 7.209913e-03	ci right 7.653649e-03	k: 4309	n:580000
KS ci ratio: 4.086555e-01	ci left: 1.263251e-04	ci right 1.926308e-04	k: 91	n:580000
HS6ST1   580000 perm   239 sec   (2427 perm/sec)   p_kst 1.568966e-04   p_cons 7.429310e-03   p_joint 2.448276e-04

Joint ci ratio: 3.210981e-01	ci left: 2.120663e-04	ci right 2.946665e-04	k: 148	n:590000
Cons ci ratio: 5.895646e-02	ci left: 7.217958e-03	ci right 7.658086e-03	k: 4387	n:590000
KS ci ratio: 4.000504e-01	ci left: 1.302742e-04	ci right 1.968313e-04	k: 95	n:590000
HS6ST1   590000 perm   245 sec   (2407 perm/sec)   p_kst 1.610169e-04   p_cons 7.435593e-03   p_joint 2.508475e-04

Joint ci ratio: 3.168725e-01	ci left: 2.146649e-04	ci right 2.969539e-04	k: 152	n:600000
Cons ci ratio: 5.849197e-02	ci left: 7.212611e-03	ci right 7.648832e-03	k: 4457	n:600000
KS ci ratio: 3.939420e-01	ci left: 1.326038e-04	ci right 1.990475e-04	k: 98	n:600000
HS6ST1   600000 perm   251 sec   (2388 perm/sec)   p_kst 1.633333e-04   p_cons 7.428333e-03   p_joint 2.533333e-04

Joint ci ratio: 3.158425e-01	ci left: 2.126550e-04	ci right 2.938550e-04	k: 153	n:610000
Cons ci ratio: 5.803829e-02	ci left: 7.207453e-03	ci right 7.639868e-03	k: 4527	n:610000
KS ci ratio: 3.919675e-01	ci left: 1.319073e-04	ci right 1.975850e-04	k: 99	n:610000
HS6ST1   610000 perm   258 sec   (2367 perm/sec)   p_kst 1.622951e-04   p_cons 7.421311e-03   p_joint 2.508197e-04

Joint ci ratio: 3.300857e-01	ci left: 1.899558e-04	ci right 2.664551e-04	k: 140	n:620000
Cons ci ratio: 5.765821e-02	ci left: 7.186576e-03	ci right 7.614820e-03	k: 4587	n:620000
KS ci ratio: 3.881056e-01	ci left: 1.326893e-04	ci right 1.979387e-04	k: 101	n:620000
HS6ST1   620000 perm   264 sec   (2345 perm/sec)   p_kst 1.629032e-04   p_cons 7.398387e-03   p_joint 2.258065e-04

Joint ci ratio: 3.534197e-01	ci left: 1.608178e-04	ci right 2.312150e-04	k: 122	n:630000
Cons ci ratio: 5.719260e-02	ci left: 7.189842e-03	ci right 7.614706e-03	k: 4662	n:630000
KS ci ratio: 3.843556e-01	ci left: 1.334494e-04	ci right 1.982782e-04	k: 103	n:630000
HS6ST1   630000 perm   271 sec   (2324 perm/sec)   p_kst 1.634921e-04   p_cons 7.400000e-03   p_joint 1.936508e-04

Joint ci ratio: 3.519920e-01	ci left: 1.597291e-04	ci right 2.293026e-04	k: 123	n:640000
Cons ci ratio: 5.679850e-02	ci left: 7.177615e-03	ci right 7.598738e-03	k: 4727	n:640000
KS ci ratio: 3.843561e-01	ci left: 1.313642e-04	ci right 1.951802e-04	k: 103	n:640000
HS6ST1   640000 perm   278 sec   (2305 perm/sec)   p_kst 1.609375e-04   p_cons 7.385938e-03   p_joint 1.921875e-04

Joint ci ratio: 3.505815e-01	ci left: 1.586744e-04	ci right 2.274486e-04	k: 124	n:650000
Cons ci ratio: 5.644804e-02	ci left: 7.156672e-03	ci right 7.573891e-03	k: 4786	n:650000
KS ci ratio: 3.807127e-01	ci left: 1.321243e-04	ci right 1.955488e-04	k: 105	n:650000
HS6ST1   650000 perm   284 sec   (2287 perm/sec)   p_kst 1.615385e-04   p_cons 7.363077e-03   p_joint 1.907692e-04

Joint ci ratio: 3.478100e-01	ci left: 1.590348e-04	ci right 2.272975e-04	k: 126	n:660000
Cons ci ratio: 5.597613e-02	ci left: 7.169241e-03	ci right 7.583586e-03	k: 4867	n:660000
KS ci ratio: 3.771710e-01	ci left: 1.328641e-04	ci right 1.959036e-04	k: 107	n:660000
HS6ST1   660000 perm   291 sec   (2269 perm/sec)   p_kst 1.621212e-04   p_cons 7.374242e-03   p_joint 1.909091e-04

Joint ci ratio: 3.437731e-01	ci left: 1.607499e-04	ci right 2.287699e-04	k: 129	n:670000
Cons ci ratio: 5.558379e-02	ci left: 7.163785e-03	ci right 7.574820e-03	k: 4936	n:670000
KS ci ratio: 3.754371e-01	ci left: 1.322324e-04	ci right 1.946127e-04	k: 108	n:670000
HS6ST1   670000 perm   298 sec   (2250 perm/sec)   p_kst 1.611940e-04   p_cons 7.367164e-03   p_joint 1.925373e-04

Joint ci ratio: 3.398736e-01	ci left: 1.624191e-04	ci right 2.301946e-04	k: 132	n:680000
Cons ci ratio: 5.518848e-02	ci left: 7.161401e-03	ci right 7.569283e-03	k: 5007	n:680000
KS ci ratio: 3.703744e-01	ci left: 1.342862e-04	ci right 1.965741e-04	k: 111	n:680000
HS6ST1   680000 perm   305 sec   (2233 perm/sec)   p_kst 1.632353e-04   p_cons 7.363235e-03   p_joint 1.941176e-04

Joint ci ratio: 3.386033e-01	ci left: 1.613910e-04	ci right 2.284308e-04	k: 133	n:690000
Cons ci ratio: 5.473097e-02	ci left: 7.177680e-03	ci right 7.582994e-03	k: 5091	n:690000
KS ci ratio: 3.687321e-01	ci left: 1.336547e-04	ci right 1.953085e-04	k: 112	n:690000
HS6ST1   690000 perm   311 sec   (2216 perm/sec)   p_kst 1.623188e-04   p_cons 7.378261e-03   p_joint 1.927536e-04

Joint ci ratio: 3.386038e-01	ci left: 1.590854e-04	ci right 2.251675e-04	k: 133	n:700000
Cons ci ratio: 5.440656e-02	ci left: 7.161094e-03	ci right 7.562999e-03	k: 5152	n:700000
KS ci ratio: 3.687326e-01	ci left: 1.317453e-04	ci right 1.925184e-04	k: 112	n:700000
HS6ST1   700000 perm   318 sec   (2199 perm/sec)   p_kst 1.600000e-04   p_cons 7.360000e-03   p_joint 1.900000e-04

Joint ci ratio: 3.386042e-01	ci left: 1.568447e-04	ci right 2.219962e-04	k: 133	n:710000
Cons ci ratio: 5.399924e-02	ci left: 7.168605e-03	ci right 7.567825e-03	k: 5230	n:710000
KS ci ratio: 3.687330e-01	ci left: 1.298897e-04	ci right 1.898070e-04	k: 112	n:710000
HS6ST1   710000 perm   325 sec   (2183 perm/sec)   p_kst 1.577465e-04   p_cons 7.366197e-03   p_joint 1.873239e-04

Joint ci ratio: 3.373480e-01	ci left: 1.559373e-04	ci right 2.204193e-04	k: 134	n:720000
Cons ci ratio: 5.362637e-02	ci left: 7.169065e-03	ci right 7.565469e-03	k: 5303	n:720000
KS ci ratio: 3.655124e-01	ci left: 1.306072e-04	ci right 1.902037e-04	k: 114	n:720000
HS6ST1   720000 perm   333 sec   (2164 perm/sec)   p_kst 1.583333e-04   p_cons 7.365278e-03   p_joint 1.861111e-04

Joint ci ratio: 3.373485e-01	ci left: 1.538012e-04	ci right 2.173999e-04	k: 134	n:730000
Cons ci ratio: 5.330609e-02	ci left: 7.157357e-03	ci right 7.550677e-03	k: 5367	n:730000
KS ci ratio: 3.655128e-01	ci left: 1.288180e-04	ci right 1.875982e-04	k: 114	n:730000
HS6ST1   730000 perm   341 sec   (2144 perm/sec)   p_kst 1.561644e-04   p_cons 7.352055e-03   p_joint 1.835616e-04

Joint ci ratio: 3.348770e-01	ci left: 1.541974e-04	ci right 2.173920e-04	k: 136	n:740000
Cons ci ratio: 5.294241e-02	ci left: 7.159308e-03	ci right 7.549969e-03	k: 5441	n:740000
KS ci ratio: 3.623752e-01	ci left: 1.295328e-04	ci right 1.880119e-04	k: 116	n:740000
HS6ST1   740000 perm   349 sec   (2123 perm/sec)   p_kst 1.567568e-04   p_cons 7.352703e-03   p_joint 1.837838e-04

Joint ci ratio: 3.336616e-01	ci left: 1.533629e-04	ci right 2.159383e-04	k: 137	n:750000
Cons ci ratio: 5.251897e-02	ci left: 7.179639e-03	ci right 7.568181e-03	k: 5529	n:750000
KS ci ratio: 3.623756e-01	ci left: 1.278057e-04	ci right 1.855051e-04	k: 116	n:750000
HS6ST1   750000 perm   356 sec   (2107 perm/sec)   p_kst 1.546667e-04   p_cons 7.372000e-03   p_joint 1.826667e-04

Joint ci ratio: 3.336620e-01	ci left: 1.513449e-04	ci right 2.130970e-04	k: 137	n:760000
Cons ci ratio: 5.215231e-02	ci left: 7.186459e-03	ci right 7.572573e-03	k: 5607	n:760000
KS ci ratio: 3.623760e-01	ci left: 1.261240e-04	ci right 1.830643e-04	k: 116	n:760000
HS6ST1   760000 perm   363 sec   (2092 perm/sec)   p_kst 1.526316e-04   p_cons 7.377632e-03   p_joint 1.802632e-04

Joint ci ratio: 3.336624e-01	ci left: 1.493794e-04	ci right 2.103296e-04	k: 137	n:770000
Cons ci ratio: 5.179781e-02	ci left: 7.191829e-03	ci right 7.575527e-03	k: 5684	n:770000
KS ci ratio: 3.623764e-01	ci left: 1.244860e-04	ci right 1.806868e-04	k: 116	n:770000
HS6ST1   770000 perm   371 sec   (2076 perm/sec)   p_kst 1.506494e-04   p_cons 7.381818e-03   p_joint 1.779221e-04

Joint ci ratio: 3.324602e-01	ci left: 1.486391e-04	ci right 2.090219e-04	k: 138	n:780000
Cons ci ratio: 5.144594e-02	ci left: 7.198336e-03	ci right 7.579695e-03	k: 5762	n:780000
KS ci ratio: 3.608377e-01	ci left: 1.240556e-04	ci right 1.797684e-04	k: 117	n:780000
HS6ST1   780000 perm   378 sec   (2061 perm/sec)   p_kst 1.500000e-04   p_cons 7.387179e-03   p_joint 1.769231e-04

Joint ci ratio: 3.361081e-01	ci left: 1.432787e-04	ci right 2.022612e-04	k: 135	n:790000
Cons ci ratio: 5.117624e-02	ci left: 7.183441e-03	ci right 7.561957e-03	k: 5823	n:790000
KS ci ratio: 3.608381e-01	ci left: 1.224853e-04	ci right 1.774929e-04	k: 117	n:790000
HS6ST1   790000 perm   387 sec   (2043 perm/sec)   p_kst 1.481013e-04   p_cons 7.370886e-03   p_joint 1.708861e-04

Joint ci ratio: 3.348793e-01	ci left: 1.426324e-04	ci right 2.010878e-04	k: 136	n:800000
Cons ci ratio: 5.093253e-02	ci left: 7.162753e-03	ci right 7.538328e-03	k: 5879	n:800000
KS ci ratio: 3.608384e-01	ci left: 1.209542e-04	ci right 1.752742e-04	k: 117	n:800000
HS6ST1   800000 perm   394 sec   (2029 perm/sec)   p_kst 1.462500e-04   p_cons 7.348750e-03   p_joint 1.700000e-04

Joint ci ratio: 3.312716e-01	ci left: 1.442656e-04	ci right 2.026175e-04	k: 139	n:810000
Cons ci ratio: 5.059361e-02	ci left: 7.170617e-03	ci right 7.544030e-03	k: 5958	n:810000
KS ci ratio: 3.563368e-01	ci left: 1.228310e-04	ci right 1.771463e-04	k: 120	n:810000
HS6ST1   810000 perm   402 sec   (2014 perm/sec)   p_kst 1.481481e-04   p_cons 7.355556e-03   p_joint 1.716049e-04

Joint ci ratio: 3.277781e-01	ci left: 1.458622e-04	ci right 2.041067e-04	k: 142	n:820000
Cons ci ratio: 5.029495e-02	ci left: 7.168664e-03	ci right 7.539707e-03	k: 6029	n:820000
KS ci ratio: 3.548735e-01	ci left: 1.224436e-04	ci right 1.763140e-04	k: 121	n:820000
HS6ST1   820000 perm   410 sec   (1998 perm/sec)   p_kst 1.475610e-04   p_cons 7.352439e-03   p_joint 1.731707e-04

Joint ci ratio: 3.277784e-01	ci left: 1.441048e-04	ci right 2.016476e-04	k: 142	n:830000
Cons ci ratio: 5.000152e-02	ci left: 7.166764e-03	ci right 7.535482e-03	k: 6100	n:830000
KS ci ratio: 3.548738e-01	ci left: 1.209684e-04	ci right 1.741898e-04	k: 121	n:830000
HS6ST1   830000 perm   419 sec   (1983 perm/sec)   p_kst 1.457831e-04   p_cons 7.349398e-03   p_joint 1.710843e-04

Joint ci ratio: 3.255100e-01	ci left: 1.445750e-04	ci right 2.018225e-04	k: 144	n:840000
Cons ci ratio: 4.963222e-02	ci left: 7.188431e-03	ci right 7.555455e-03	k: 6191	n:840000
KS ci ratio: 3.520002e-01	ci left: 1.216979e-04	ci right 1.747076e-04	k: 123	n:840000
HS6ST1   840000 perm   427 sec   (1969 perm/sec)   p_kst 1.464286e-04   p_cons 7.370238e-03   p_joint 1.714286e-04

Joint ci ratio: 3.232880e-01	ci left: 1.450355e-04	ci right 2.019920e-04	k: 146	n:850000
Cons ci ratio: 4.935414e-02	ci left: 7.185195e-03	ci right 7.549939e-03	k: 6261	n:850000
KS ci ratio: 3.505895e-01	ci left: 1.213388e-04	ci right 1.739320e-04	k: 124	n:850000
HS6ST1   850000 perm   435 sec   (1956 perm/sec)   p_kst 1.458824e-04   p_cons 7.365882e-03   p_joint 1.717647e-04

Joint ci ratio: 3.189769e-01	ci left: 1.476253e-04	ci right 2.046680e-04	k: 150	n:860000
Cons ci ratio: 4.912369e-02	ci left: 7.169404e-03	ci right 7.531600e-03	k: 6320	n:860000
KS ci ratio: 3.478179e-01	ci left: 1.220495e-04	ci right 1.744383e-04	k: 126	n:860000
HS6ST1   860000 perm   443 sec   (1942 perm/sec)   p_kst 1.465116e-04   p_cons 7.348837e-03   p_joint 1.744186e-04

Joint ci ratio: 3.189772e-01	ci left: 1.459285e-04	ci right 2.023156e-04	k: 150	n:870000
Cons ci ratio: 4.888872e-02	ci left: 7.156252e-03	ci right 7.516005e-03	k: 6381	n:870000
KS ci ratio: 3.478182e-01	ci left: 1.206466e-04	ci right 1.724333e-04	k: 126	n:870000
HS6ST1   870000 perm   451 sec   (1930 perm/sec)   p_kst 1.448276e-04   p_cons 7.334483e-03   p_joint 1.724138e-04

Joint ci ratio: 3.464569e-01	ci left: 1.203129e-04	ci right 1.717089e-04	k: 127	n:880000
Cons ci ratio: 4.863048e-02	ci left: 7.151261e-03	ci right 7.508811e-03	k: 6449	n:880000
KS ci ratio: 3.478185e-01	ci left: 1.192756e-04	ci right 1.704739e-04	k: 126	n:880000
HS6ST1   880000 perm   459 sec   (1917 perm/sec)   p_kst 1.431818e-04   p_cons 7.328409e-03   p_joint 1.443182e-04

Joint ci ratio: 3.424666e-01	ci left: 1.220403e-04	ci right 1.734408e-04	k: 130	n:890000
Cons ci ratio: 4.841746e-02	ci left: 7.134176e-03	ci right 7.489266e-03	k: 6506	n:890000
KS ci ratio: 3.437814e-01	ci left: 1.210135e-04	ci right 1.722208e-04	k: 129	n:890000
HS6ST1   890000 perm   467 sec   (1904 perm/sec)   p_kst 1.449438e-04   p_cons 7.310112e-03   p_joint 1.460674e-04

Joint ci ratio: 3.424669e-01	ci left: 1.206843e-04	ci right 1.715137e-04	k: 130	n:900000
Cons ci ratio: 4.816657e-02	ci left: 7.129551e-03	ci right 7.482520e-03	k: 6574	n:900000
KS ci ratio: 3.437817e-01	ci left: 1.196689e-04	ci right 1.703073e-04	k: 129	n:900000
HS6ST1   900000 perm   476 sec   (1890 perm/sec)   p_kst 1.433333e-04   p_cons 7.304444e-03   p_joint 1.444444e-04

Joint ci ratio: 3.398821e-01	ci left: 1.213676e-04	ci right 1.720143e-04	k: 132	n:910000
Cons ci ratio: 4.791592e-02	ci left: 7.126117e-03	ci right 7.477030e-03	k: 6643	n:910000
KS ci ratio: 3.424671e-01	ci left: 1.193581e-04	ci right 1.696290e-04	k: 130	n:910000
HS6ST1   910000 perm   485 sec   (1877 perm/sec)   p_kst 1.428571e-04   p_cons 7.300000e-03   p_joint 1.450549e-04

Joint ci ratio: 3.398824e-01	ci left: 1.200484e-04	ci right 1.701446e-04	k: 132	n:920000
Cons ci ratio: 4.765840e-02	ci left: 7.125985e-03	ci right 7.474954e-03	k: 6715	n:920000
KS ci ratio: 3.424674e-01	ci left: 1.180607e-04	ci right 1.677852e-04	k: 130	n:920000
HS6ST1   920000 perm   493 sec   (1865 perm/sec)   p_kst 1.413043e-04   p_cons 7.298913e-03   p_joint 1.434783e-04

Joint ci ratio: 3.386118e-01	ci left: 1.197412e-04	ci right 1.694817e-04	k: 133	n:930000
Cons ci ratio: 4.739797e-02	ci left: 7.127986e-03	ci right 7.475093e-03	k: 6789	n:930000
KS ci ratio: 3.411678e-01	ci left: 1.177742e-04	ci right 1.671483e-04	k: 131	n:930000
HS6ST1   930000 perm   502 sec   (1852 perm/sec)   p_kst 1.408602e-04   p_cons 7.300000e-03   p_joint 1.430108e-04

Joint ci ratio: 3.386121e-01	ci left: 1.184674e-04	ci right 1.676787e-04	k: 133	n:940000
Cons ci ratio: 4.714176e-02	ci left: 7.129949e-03	ci right 7.475225e-03	k: 6863	n:940000
KS ci ratio: 3.411681e-01	ci left: 1.165213e-04	ci right 1.653702e-04	k: 131	n:940000
HS6ST1   940000 perm   511 sec   (1840 perm/sec)   p_kst 1.393617e-04   p_cons 7.301064e-03   p_joint 1.414894e-04

Joint ci ratio: 3.361130e-01	ci left: 1.191473e-04	ci right 1.681966e-04	k: 135	n:950000
Cons ci ratio: 4.686584e-02	ci left: 7.139159e-03	ci right 7.482803e-03	k: 6944	n:950000
KS ci ratio: 3.386124e-01	ci left: 1.172203e-04	ci right 1.659137e-04	k: 133	n:950000
HS6ST1   950000 perm   520 sec   (1828 perm/sec)   p_kst 1.400000e-04   p_cons 7.309474e-03   p_joint 1.421053e-04

Joint ci ratio: 3.348841e-01	ci left: 1.188601e-04	ci right 1.675736e-04	k: 136	n:960000
Cons ci ratio: 4.665161e-02	ci left: 7.130679e-03	ci right 7.472303e-03	k: 7008	n:960000
KS ci ratio: 3.386126e-01	ci left: 1.159993e-04	ci right 1.641854e-04	k: 133	n:960000
HS6ST1   960000 perm   529 sec   (1816 perm/sec)   p_kst 1.385417e-04   p_cons 7.300000e-03   p_joint 1.416667e-04

Joint ci ratio: 3.348844e-01	ci left: 1.176347e-04	ci right 1.658461e-04	k: 136	n:970000
Cons ci ratio: 4.641055e-02	ci left: 7.131549e-03	ci right 7.471403e-03	k: 7081	n:970000
KS ci ratio: 3.373562e-01	ci left: 1.157469e-04	ci right 1.636109e-04	k: 134	n:970000
HS6ST1   970000 perm   537 sec   (1805 perm/sec)   p_kst 1.381443e-04   p_cons 7.300000e-03   p_joint 1.402062e-04

Joint ci ratio: 3.336689e-01	ci left: 1.173691e-04	ci right 1.652595e-04	k: 137	n:980000
Cons ci ratio: 4.615045e-02	ci left: 7.139467e-03	ci right 7.477740e-03	k: 7161	n:980000
KS ci ratio: 3.373565e-01	ci left: 1.145658e-04	ci right 1.619414e-04	k: 134	n:980000
HS6ST1   980000 perm   546 sec   (1793 perm/sec)   p_kst 1.367347e-04   p_cons 7.307143e-03   p_joint 1.397959e-04

Joint ci ratio: 3.336691e-01	ci left: 1.161836e-04	ci right 1.635903e-04	k: 137	n:990000
Cons ci ratio: 4.595865e-02	ci left: 7.127259e-03	ci right 7.463513e-03	k: 7221	n:990000
KS ci ratio: 3.373567e-01	ci left: 1.134085e-04	ci right 1.603057e-04	k: 134	n:990000
HS6ST1   990000 perm   555 sec   (1782 perm/sec)   p_kst 1.353535e-04   p_cons 7.293939e-03   p_joint 1.383838e-04

Joint ci ratio: 3.324668e-01	ci left: 1.159381e-04	ci right 1.630377e-04	k: 138	n:1000000
Cons ci ratio: 4.566825e-02	ci left: 7.146934e-03	ci right 7.481930e-03	k: 7313	n:1000000
KS ci ratio: 3.373569e-01	ci left: 1.122744e-04	ci right 1.587026e-04	k: 134	n:1000000
HS6ST1   1000000 perm   565 sec   (1771 perm/sec)   p_kst 1.340000e-04   p_cons 7.313000e-03   p_joint 1.380000e-04

Joint ci ratio: 3.289358e-01	ci left: 1.175140e-04	ci right 1.646395e-04	k: 141	n:1010000
Cons ci ratio: 4.545133e-02	ci left: 7.144689e-03	ci right 7.477948e-03	k: 7383	n:1010000
KS ci ratio: 3.361144e-01	ci left: 1.120692e-04	ci right 1.582048e-04	k: 135	n:1010000
HS6ST1   1010000 perm   574 sec   (1760 perm/sec)   p_kst 1.336634e-04   p_cons 7.309901e-03   p_joint 1.396040e-04

Joint ci ratio: 3.266434e-01	ci left: 1.181613e-04	ci right 1.651469e-04	k: 143	n:1020000
Cons ci ratio: 4.525584e-02	ci left: 7.136676e-03	ci right 7.468092e-03	k: 7447	n:1020000
KS ci ratio: 3.324672e-01	ci left: 1.136648e-04	ci right 1.598409e-04	k: 138	n:1020000
HS6ST1   1020000 perm   583 sec   (1749 perm/sec)   p_kst 1.352941e-04   p_cons 7.300980e-03   p_joint 1.401961e-04

Joint ci ratio: 3.255152e-01	ci left: 1.179055e-04	ci right 1.645936e-04	k: 144	n:1030000
Cons ci ratio: 4.506284e-02	ci left: 7.128822e-03	ci right 7.458424e-03	k: 7511	n:1030000
KS ci ratio: 3.324675e-01	ci left: 1.125613e-04	ci right 1.582891e-04	k: 138	n:1030000
HS6ST1   1030000 perm   593 sec   (1738 perm/sec)   p_kst 1.339806e-04   p_cons 7.292233e-03   p_joint 1.398058e-04

Joint ci ratio: 3.221989e-01	ci left: 1.194220e-04	ci right 1.661293e-04	k: 147	n:1040000
Cons ci ratio: 4.485738e-02	ci left: 7.125875e-03	ci right 7.453801e-03	k: 7580	n:1040000
KS ci ratio: 3.312780e-01	ci left: 1.123604e-04	ci right 1.578084e-04	k: 139	n:1040000
HS6ST1   1040000 perm   603 sec   (1725 perm/sec)   p_kst 1.336538e-04   p_cons 7.288462e-03   p_joint 1.413462e-04

Joint ci ratio: 3.211160e-01	ci left: 1.191601e-04	ci right 1.655761e-04	k: 148	n:1050000
Cons ci ratio: 4.462534e-02	ci left: 7.132407e-03	ci right 7.458891e-03	k: 7659	n:1050000
KS ci ratio: 3.301012e-01	ci left: 1.121636e-04	ci right 1.573367e-04	k: 140	n:1050000
HS6ST1   1050000 perm   612 sec   (1715 perm/sec)   p_kst 1.333333e-04   p_cons 7.294286e-03   p_joint 1.409524e-04

Joint ci ratio: 3.189822e-01	ci left: 1.197712e-04	ci right 1.660519e-04	k: 150	n:1060000
Cons ci ratio: 4.438242e-02	ci left: 7.143484e-03	ci right 7.468650e-03	k: 7743	n:1060000
KS ci ratio: 3.277846e-01	ci left: 1.128364e-04	ci right 1.578944e-04	k: 142	n:1060000
HS6ST1   1060000 perm   622 sec   (1704 perm/sec)   p_kst 1.339623e-04   p_cons 7.304717e-03   p_joint 1.415094e-04

Joint ci ratio: 3.179313e-01	ci left: 1.195117e-04	ci right 1.655090e-04	k: 151	n:1070000
Cons ci ratio: 4.416047e-02	ci left: 7.148814e-03	ci right 7.472554e-03	k: 7821	n:1070000
KS ci ratio: 3.266445e-01	ci left: 1.126397e-04	ci right 1.574298e-04	k: 143	n:1070000
HS6ST1   1070000 perm   632 sec   (1693 perm/sec)   p_kst 1.336449e-04   p_cons 7.309346e-03   p_joint 1.411215e-04

Joint ci ratio: 3.243994e-01	ci left: 1.132973e-04	ci right 1.579748e-04	k: 145	n:1080000
Cons ci ratio: 4.394183e-02	ci left: 7.154048e-03	ci right 7.476380e-03	k: 7899	n:1080000
KS ci ratio: 3.243994e-01	ci left: 1.132973e-04	ci right 1.579748e-04	k: 145	n:1080000
HS6ST1   1080000 perm   642 sec   (1683 perm/sec)   p_kst 1.342593e-04   p_cons 7.313889e-03   p_joint 1.342593e-04

Joint ci ratio: 3.222000e-01	ci left: 1.139438e-04	ci right 1.585087e-04	k: 147	n:1090000
Cons ci ratio: 4.373192e-02	ci left: 7.157375e-03	ci right 7.478279e-03	k: 7975	n:1090000
KS ci ratio: 3.222000e-01	ci left: 1.139438e-04	ci right 1.585087e-04	k: 147	n:1090000
HS6ST1   1090000 perm   652 sec   (1673 perm/sec)   p_kst 1.348624e-04   p_cons 7.316514e-03   p_joint 1.348624e-04

Joint ci ratio: 3.211170e-01	ci left: 1.137437e-04	ci right 1.580500e-04	k: 148	n:1100000
Cons ci ratio: 4.349235e-02	ci left: 7.171437e-03	ci right 7.491165e-03	k: 8063	n:1100000
KS ci ratio: 3.211170e-01	ci left: 1.137437e-04	ci right 1.580500e-04	k: 148	n:1100000
HS6ST1   1100000 perm   662 sec   (1662 perm/sec)   p_kst 1.345455e-04   p_cons 7.330000e-03   p_joint 1.345455e-04

Joint ci ratio: 3.211172e-01	ci left: 1.127190e-04	ci right 1.566261e-04	k: 148	n:1110000
Cons ci ratio: 4.329682e-02	ci left: 7.171882e-03	ci right 7.490157e-03	k: 8136	n:1110000
KS ci ratio: 3.211172e-01	ci left: 1.127190e-04	ci right 1.566261e-04	k: 148	n:1110000
HS6ST1   1110000 perm   672 sec   (1651 perm/sec)   p_kst 1.333333e-04   p_cons 7.329730e-03   p_joint 1.333333e-04

Joint ci ratio: 3.179323e-01	ci left: 1.141763e-04	ci right 1.581203e-04	k: 151	n:1120000
Cons ci ratio: 4.310920e-02	ci left: 7.170555e-03	ci right 7.487358e-03	k: 8207	n:1120000
KS ci ratio: 3.189834e-01	ci left: 1.133548e-04	ci right 1.571564e-04	k: 150	n:1120000
HS6ST1   1120000 perm   682 sec   (1641 perm/sec)   p_kst 1.339286e-04   p_cons 7.327679e-03   p_joint 1.348214e-04

Joint ci ratio: 3.244004e-01	ci left: 1.082841e-04	ci right 1.509848e-04	k: 145	n:1130000
Cons ci ratio: 4.296322e-02	ci left: 7.156122e-03	ci right 7.471190e-03	k: 8263	n:1130000
KS ci ratio: 3.189836e-01	ci left: 1.123517e-04	ci right 1.557656e-04	k: 150	n:1130000
HS6ST1   1130000 perm   693 sec   (1632 perm/sec)   p_kst 1.327434e-04   p_cons 7.312389e-03   p_joint 1.283186e-04

Joint ci ratio: 3.200455e-01	ci left: 1.105593e-04	ci right 1.534520e-04	k: 149	n:1140000
Cons ci ratio: 4.278505e-02	ci left: 7.153226e-03	ci right 7.466829e-03	k: 8332	n:1140000
KS ci ratio: 3.158611e-01	ci left: 1.137881e-04	ci right 1.572398e-04	k: 153	n:1140000
HS6ST1   1140000 perm   703 sec   (1622 perm/sec)   p_kst 1.342105e-04   p_cons 7.308772e-03   p_joint 1.307018e-04

Joint ci ratio: 3.168920e-01	ci left: 1.119981e-04	ci right 1.549341e-04	k: 152	n:1150000
Cons ci ratio: 4.262954e-02	ci left: 7.143501e-03	ci right 7.455510e-03	k: 8393	n:1150000
KS ci ratio: 3.128286e-01	ci left: 1.152016e-04	ci right 1.586863e-04	k: 156	n:1150000
HS6ST1   1150000 perm   713 sec   (1613 perm/sec)   p_kst 1.356522e-04   p_cons 7.298261e-03   p_joint 1.321739e-04

Joint ci ratio: 3.179330e-01	ci left: 1.102392e-04	ci right 1.526680e-04	k: 151	n:1160000
Cons ci ratio: 4.245800e-02	ci left: 7.139916e-03	ci right 7.450483e-03	k: 8461	n:1160000
KS ci ratio: 3.118371e-01	ci left: 1.150030e-04	ci right 1.582477e-04	k: 157	n:1160000
HS6ST1   1160000 perm   724 sec   (1603 perm/sec)   p_kst 1.353448e-04   p_cons 7.293966e-03   p_joint 1.301724e-04

Joint ci ratio: 3.179332e-01	ci left: 1.092970e-04	ci right 1.513631e-04	k: 151	n:1170000
Cons ci ratio: 4.228352e-02	ci left: 7.138086e-03	ci right 7.447267e-03	k: 8531	n:1170000
KS ci ratio: 3.118373e-01	ci left: 1.140200e-04	ci right 1.568952e-04	k: 157	n:1170000
HS6ST1   1170000 perm   734 sec   (1593 perm/sec)   p_kst 1.341880e-04   p_cons 7.291453e-03   p_joint 1.290598e-04

Joint ci ratio: 3.168925e-01	ci left: 1.091507e-04	ci right 1.509951e-04	k: 152	n:1180000
Cons ci ratio: 4.204721e-02	ci left: 7.158093e-03	ci right 7.466366e-03	k: 8627	n:1180000
KS ci ratio: 3.118374e-01	ci left: 1.130537e-04	ci right 1.555656e-04	k: 157	n:1180000
HS6ST1   1180000 perm   745 sec   (1584 perm/sec)   p_kst 1.330508e-04   p_cons 7.311017e-03   p_joint 1.288136e-04

Joint ci ratio: 3.168927e-01	ci left: 1.082334e-04	ci right 1.497263e-04	k: 152	n:1190000
Cons ci ratio: 4.187531e-02	ci left: 7.156979e-03	ci right 7.463914e-03	k: 8698	n:1190000
KS ci ratio: 3.118376e-01	ci left: 1.121037e-04	ci right 1.542583e-04	k: 157	n:1190000
HS6ST1   1190000 perm   756 sec   (1575 perm/sec)   p_kst 1.319328e-04   p_cons 7.309244e-03   p_joint 1.277311e-04

Joint ci ratio: 3.158622e-01	ci left: 1.080986e-04	ci right 1.493779e-04	k: 153	n:1200000
Cons ci ratio: 4.171029e-02	ci left: 7.154236e-03	ci right 7.459815e-03	k: 8767	n:1200000
KS ci ratio: 3.108555e-01	ci left: 1.119377e-04	ci right 1.538710e-04	k: 158	n:1200000
HS6ST1   1200000 perm   766 sec   (1566 perm/sec)   p_kst 1.316667e-04   p_cons 7.305833e-03   p_joint 1.275000e-04

Joint ci ratio: 3.128296e-01	ci left: 1.094891e-04	ci right 1.508176e-04	k: 156	n:1210000
Cons ci ratio: 4.152354e-02	ci left: 7.159721e-03	ci right 7.464132e-03	k: 8846	n:1210000
KS ci ratio: 3.079635e-01	ci left: 1.132995e-04	ci right 1.552706e-04	k: 161	n:1210000
HS6ST1   1210000 perm   777 sec   (1557 perm/sec)   p_kst 1.330579e-04   p_cons 7.310744e-03   p_joint 1.289256e-04

Joint ci ratio: 3.098828e-01	ci left: 1.108585e-04	ci right 1.522319e-04	k: 159	n:1220000
Cons ci ratio: 4.135562e-02	ci left: 7.159440e-03	ci right 7.462579e-03	k: 8918	n:1220000
KS ci ratio: 3.060799e-01	ci left: 1.138839e-04	ci right 1.557631e-04	k: 163	n:1220000
HS6ST1   1220000 perm   788 sec   (1547 perm/sec)   p_kst 1.336066e-04   p_cons 7.309836e-03   p_joint 1.303279e-04

Joint ci ratio: 3.098829e-01	ci left: 1.099572e-04	ci right 1.509943e-04	k: 159	n:1230000
Cons ci ratio: 4.121743e-02	ci left: 7.149509e-03	ci right 7.451192e-03	k: 8978	n:1230000
KS ci ratio: 3.060800e-01	ci left: 1.129580e-04	ci right 1.544968e-04	k: 163	n:1230000
HS6ST1   1230000 perm   799 sec   (1539 perm/sec)   p_kst 1.325203e-04   p_cons 7.299187e-03   p_joint 1.292683e-04

Joint ci ratio: 3.098831e-01	ci left: 1.090705e-04	ci right 1.497766e-04	k: 159	n:1240000
Cons ci ratio: 4.105318e-02	ci left: 7.149319e-03	ci right 7.449764e-03	k: 9050	n:1240000
KS ci ratio: 3.060802e-01	ci left: 1.120470e-04	ci right 1.532508e-04	k: 163	n:1240000
HS6ST1   1240000 perm   810 sec   (1530 perm/sec)   p_kst 1.314516e-04   p_cons 7.298387e-03   p_joint 1.282258e-04

Joint ci ratio: 3.098833e-01	ci left: 1.081979e-04	ci right 1.485784e-04	k: 159	n:1250000
Cons ci ratio: 4.085931e-02	ci left: 7.160221e-03	ci right 7.459669e-03	k: 9136	n:1250000
KS ci ratio: 3.060804e-01	ci left: 1.111507e-04	ci right 1.520248e-04	k: 163	n:1250000
HS6ST1   1250000 perm   821 sec   (1522 perm/sec)   p_kst 1.304000e-04   p_cons 7.308800e-03   p_joint 1.272000e-04

Joint ci ratio: 3.089194e-01	ci left: 1.080712e-04	ci right 1.482543e-04	k: 160	n:1260000
Cons ci ratio: 4.069483e-02	ci left: 7.161525e-03	ci right 7.459794e-03	k: 9210	n:1260000
KS ci ratio: 3.042308e-01	ci left: 1.117343e-04	ci right 1.525268e-04	k: 165	n:1260000
HS6ST1   1260000 perm   833 sec   (1513 perm/sec)   p_kst 1.309524e-04   p_cons 7.309524e-03   p_joint 1.269841e-04

Joint ci ratio: 3.200476e-01	ci left: 9.924208e-05	ci right 1.377444e-04	k: 149	n:1270000
Cons ci ratio: 4.055433e-02	ci left: 7.155016e-03	ci right 7.451962e-03	k: 9274	n:1270000
KS ci ratio: 3.015183e-01	ci left: 1.130372e-04	ci right 1.538669e-04	k: 168	n:1270000
HS6ST1   1270000 perm   844 sec   (1505 perm/sec)   p_kst 1.322835e-04   p_cons 7.302362e-03   p_joint 1.173228e-04

Joint ci ratio: 3.189861e-01	ci left: 9.918536e-05	ci right 1.375120e-04	k: 150	n:1280000
Cons ci ratio: 4.040003e-02	ci left: 7.154025e-03	ci right 7.449773e-03	k: 9345	n:1280000
KS ci ratio: 3.006302e-01	ci left: 1.128764e-04	ci right 1.535049e-04	k: 169	n:1280000
HS6ST1   1280000 perm   855 sec   (1497 perm/sec)   p_kst 1.320312e-04   p_cons 7.300781e-03   p_joint 1.171875e-04

Joint ci ratio: 3.179351e-01	ci left: 9.912971e-05	ci right 1.372830e-04	k: 151	n:1290000
Cons ci ratio: 4.023026e-02	ci left: 7.159191e-03	ci right 7.453880e-03	k: 9424	n:1290000
KS ci ratio: 2.988772e-01	ci left: 1.134352e-04	ci right 1.539816e-04	k: 171	n:1290000
HS6ST1   1290000 perm   867 sec   (1488 perm/sec)   p_kst 1.325581e-04   p_cons 7.305426e-03   p_joint 1.170543e-04

Joint ci ratio: 3.158638e-01	ci left: 9.978330e-05	ci right 1.378874e-04	k: 153	n:1300000
Cons ci ratio: 4.008812e-02	ci left: 7.155141e-03	ci right 7.448599e-03	k: 9491	n:1300000
KS ci ratio: 2.971544e-01	ci left: 1.139861e-04	ci right 1.544502e-04	k: 173	n:1300000
HS6ST1   1300000 perm   879 sec   (1479 perm/sec)   p_kst 1.330769e-04   p_cons 7.300769e-03   p_joint 1.176923e-04

Joint ci ratio: 3.148432e-01	ci left: 9.972454e-05	ci right 1.376584e-04	k: 154	n:1310000
Cons ci ratio: 3.993065e-02	ci left: 7.157201e-03	ci right 7.449564e-03	k: 9566	n:1310000
KS ci ratio: 2.954612e-01	ci left: 1.145292e-04	ci right 1.549111e-04	k: 175	n:1310000
HS6ST1   1310000 perm   890 sec   (1472 perm/sec)   p_kst 1.335878e-04   p_cons 7.302290e-03   p_joint 1.175573e-04

Joint ci ratio: 3.148434e-01	ci left: 9.896905e-05	ci right 1.366155e-04	k: 154	n:1320000
Cons ci ratio: 3.977086e-02	ci left: 7.160732e-03	ci right 7.452042e-03	k: 9643	n:1320000
KS ci ratio: 2.954613e-01	ci left: 1.136615e-04	ci right 1.537375e-04	k: 175	n:1320000
HS6ST1   1320000 perm   901 sec   (1464 perm/sec)   p_kst 1.325758e-04   p_cons 7.305303e-03   p_joint 1.166667e-04

Joint ci ratio: 3.138327e-01	ci left: 9.891749e-05	ci right 1.363993e-04	k: 155	n:1330000
Cons ci ratio: 3.962735e-02	ci left: 7.159001e-03	ci right 7.449166e-03	k: 9713	n:1330000
KS ci ratio: 2.946255e-01	ci left: 1.135032e-04	ci right 1.533890e-04	k: 176	n:1330000
HS6ST1   1330000 perm   913 sec   (1457 perm/sec)   p_kst 1.323308e-04   p_cons 7.303008e-03   p_joint 1.165414e-04

Joint ci ratio: 3.128316e-01	ci left: 9.886689e-05	ci right 1.361862e-04	k: 156	n:1340000
Cons ci ratio: 3.946913e-02	ci left: 7.163209e-03	ci right 7.452359e-03	k: 9791	n:1340000
KS ci ratio: 2.929749e-01	ci left: 1.140387e-04	ci right 1.538465e-04	k: 178	n:1340000
HS6ST1   1340000 perm   924 sec   (1449 perm/sec)   p_kst 1.328358e-04   p_cons 7.306716e-03   p_joint 1.164179e-04

Joint ci ratio: 2.642647e-01	ci left: 1.414486e-04	ci right 1.851877e-04	k: 219	n:1350000
Cons ci ratio: 3.932885e-02	ci left: 7.161489e-03	ci right 7.449519e-03	k: 9861	n:1350000
KS ci ratio: 2.913517e-01	ci left: 1.145669e-04	ci right 1.542966e-04	k: 180	n:1350000
HS6ST1   1350000 perm   937 sec   (1441 perm/sec)   p_kst 1.333333e-04   p_cons 7.304444e-03   p_joint 1.622222e-04

Joint ci ratio: 2.624810e-01	ci left: 1.424688e-04	ci right 1.861772e-04	k: 222	n:1360000
Cons ci ratio: 3.918410e-02	ci left: 7.161981e-03	ci right 7.448947e-03	k: 9934	n:1360000
KS ci ratio: 2.889666e-01	ci left: 1.157699e-04	ci right 1.555280e-04	k: 183	n:1360000
HS6ST1   1360000 perm   949 sec   (1434 perm/sec)   p_kst 1.345588e-04   p_cons 7.304412e-03   p_joint 1.632353e-04

Joint ci ratio: 2.618945e-01	ci left: 1.421108e-04	ci right 1.855960e-04	k: 223	n:1370000
Cons ci ratio: 3.904486e-02	ci left: 7.161022e-03	ci right 7.446907e-03	k: 10005	n:1370000
KS ci ratio: 2.889667e-01	ci left: 1.149248e-04	ci right 1.543928e-04	k: 183	n:1370000
HS6ST1   1370000 perm   961 sec   (1426 perm/sec)   p_kst 1.335766e-04   p_cons 7.302920e-03   p_joint 1.627737e-04

Joint ci ratio: 2.613119e-01	ci left: 1.417581e-04	ci right 1.850232e-04	k: 224	n:1380000
Cons ci ratio: 3.889738e-02	ci left: 7.163666e-03	ci right 7.448552e-03	k: 10081	n:1380000
KS ci ratio: 2.881847e-01	ci left: 1.147642e-04	ci right 1.540510e-04	k: 184	n:1380000
HS6ST1   1380000 perm   973 sec   (1418 perm/sec)   p_kst 1.333333e-04   p_cons 7.305072e-03   p_joint 1.623188e-04

Joint ci ratio: 2.607332e-01	ci left: 1.414106e-04	ci right 1.844585e-04	k: 225	n:1390000
Cons ci ratio: 3.876308e-02	ci left: 7.162000e-03	ci right 7.445814e-03	k: 10151	n:1390000
KS ci ratio: 2.874090e-01	ci left: 1.146061e-04	ci right 1.537139e-04	k: 185	n:1390000
HS6ST1   1390000 perm   985 sec   (1411 perm/sec)   p_kst 1.330935e-04   p_cons 7.302878e-03   p_joint 1.618705e-04

Joint ci ratio: 2.590196e-01	ci left: 1.424039e-04	ci right 1.854230e-04	k: 228	n:1400000
Cons ci ratio: 3.862256e-02	ci left: 7.163188e-03	ci right 7.445998e-03	k: 10225	n:1400000
KS ci ratio: 2.858761e-01	ci left: 1.151133e-04	ci right 1.541469e-04	k: 187	n:1400000
HS6ST1   1400000 perm   997 sec   (1404 perm/sec)   p_kst 1.335714e-04   p_cons 7.303571e-03   p_joint 1.628571e-04

Joint ci ratio: 2.567864e-01	ci left: 1.440474e-04	ci right 1.871278e-04	k: 232	n:1410000
Cons ci ratio: 3.848544e-02	ci left: 7.163660e-03	ci right 7.445462e-03	k: 10298	n:1410000
KS ci ratio: 2.836219e-01	ci left: 1.162727e-04	ci right 1.553329e-04	k: 190	n:1410000
HS6ST1   1410000 perm   1009 sec   (1397 perm/sec)   p_kst 1.347518e-04   p_cons 7.303546e-03   p_joint 1.645390e-04

Joint ci ratio: 2.556914e-01	ci left: 1.443510e-04	ci right 1.873087e-04	k: 234	n:1420000
Cons ci ratio: 3.836654e-02	ci left: 7.157848e-03	ci right 7.438533e-03	k: 10362	n:1420000
KS ci ratio: 2.821485e-01	ci left: 1.167624e-04	ci right 1.557471e-04	k: 192	n:1420000
HS6ST1   1420000 perm   1021 sec   (1390 perm/sec)   p_kst 1.352113e-04   p_cons 7.297183e-03   p_joint 1.647887e-04

Joint ci ratio: 2.546102e-01	ci left: 1.446507e-04	ci right 1.874867e-04	k: 236	n:1430000
Cons ci ratio: 3.823581e-02	ci left: 7.156968e-03	ci right 7.436641e-03	k: 10433	n:1430000
KS ci ratio: 2.806978e-01	ci left: 1.172458e-04	ci right 1.561550e-04	k: 194	n:1430000
HS6ST1   1430000 perm   1034 sec   (1384 perm/sec)   p_kst 1.356643e-04   p_cons 7.295804e-03   p_joint 1.650350e-04

Joint ci ratio: 2.535426e-01	ci left: 1.449467e-04	ci right 1.876618e-04	k: 238	n:1440000
Cons ci ratio: 3.809180e-02	ci left: 7.161605e-03	ci right 7.440382e-03	k: 10512	n:1440000
KS ci ratio: 2.799808e-01	ci left: 1.170772e-04	ci right 1.558137e-04	k: 195	n:1440000
HS6ST1   1440000 perm   1046 sec   (1377 perm/sec)   p_kst 1.354167e-04   p_cons 7.300000e-03   p_joint 1.652778e-04

Joint ci ratio: 2.530139e-01	ci left: 1.445929e-04	ci right 1.871010e-04	k: 239	n:1450000
Cons ci ratio: 3.794218e-02	ci left: 7.168913e-03	ci right 7.446854e-03	k: 10595	n:1450000
KS ci ratio: 2.792694e-01	ci left: 1.169111e-04	ci right 1.554770e-04	k: 196	n:1450000
HS6ST1   1450000 perm   1058 sec   (1370 perm/sec)   p_kst 1.351724e-04   p_cons 7.306897e-03   p_joint 1.648276e-04

Joint ci ratio: 2.524885e-01	ci left: 1.442441e-04	ci right 1.865477e-04	k: 240	n:1460000
Cons ci ratio: 3.781394e-02	ci left: 7.168658e-03	ci right 7.445630e-03	k: 10667	n:1460000
KS ci ratio: 2.792695e-01	ci left: 1.161103e-04	ci right 1.544121e-04	k: 196	n:1460000
HS6ST1   1460000 perm   1071 sec   (1363 perm/sec)   p_kst 1.342466e-04   p_cons 7.306164e-03   p_joint 1.643836e-04

Joint ci ratio: 2.519663e-01	ci left: 1.439001e-04	ci right 1.860018e-04	k: 241	n:1470000
Cons ci ratio: 3.768346e-02	ci left: 7.169757e-03	ci right 7.445795e-03	k: 10741	n:1470000
KS ci ratio: 2.785634e-01	ci left: 1.159531e-04	ci right 1.540894e-04	k: 197	n:1470000
HS6ST1   1470000 perm   1084 sec   (1356 perm/sec)   p_kst 1.340136e-04   p_cons 7.306803e-03   p_joint 1.639456e-04

Joint ci ratio: 2.504188e-01	ci left: 1.448273e-04	ci right 1.868994e-04	k: 244	n:1480000
Cons ci ratio: 3.755606e-02	ci left: 7.170173e-03	ci right 7.445274e-03	k: 10814	n:1480000
KS ci ratio: 2.764766e-01	ci left: 1.170557e-04	ci right 1.552160e-04	k: 200	n:1480000
HS6ST1   1480000 perm   1096 sec   (1350 perm/sec)   p_kst 1.351351e-04   p_cons 7.306757e-03   p_joint 1.648649e-04

Joint ci ratio: 2.499094e-01	ci left: 1.444843e-04	ci right 1.863582e-04	k: 245	n:1490000
Cons ci ratio: 3.742649e-02	ci left: 7.171915e-03	ci right 7.446113e-03	k: 10889	n:1490000
KS ci ratio: 2.757914e-01	ci left: 1.168947e-04	ci right 1.548918e-04	k: 201	n:1490000
HS6ST1   1490000 perm   1109 sec   (1343 perm/sec)   p_kst 1.348993e-04   p_cons 7.308054e-03   p_joint 1.644295e-04

Joint ci ratio: 2.479018e-01	ci left: 1.460214e-04	ci right 1.879484e-04	k: 249	n:1500000
Cons ci ratio: 3.728626e-02	ci left: 7.178259e-03	ci right 7.451649e-03	k: 10971	n:1500000
KS ci ratio: 2.731005e-01	ci left: 1.185986e-04	ci right 1.567088e-04	k: 205	n:1500000
HS6ST1   1500000 perm   1123 sec   (1336 perm/sec)   p_kst 1.366667e-04   p_cons 7.314000e-03   p_joint 1.660000e-04

Joint ci ratio: 2.474076e-01	ci left: 1.456756e-04	ci right 1.874070e-04	k: 250	n:1510000
Cons ci ratio: 3.714252e-02	ci left: 7.186489e-03	ci right 7.459114e-03	k: 11056	n:1510000
KS ci ratio: 2.731006e-01	ci left: 1.178132e-04	ci right 1.556711e-04	k: 205	n:1510000
HS6ST1   1510000 perm   1136 sec   (1329 perm/sec)   p_kst 1.357616e-04   p_cons 7.321854e-03   p_joint 1.655629e-04

Joint ci ratio: 2.474077e-01	ci left: 1.447172e-04	ci right 1.861741e-04	k: 250	n:1520000
Cons ci ratio: 3.701549e-02	ci left: 7.188746e-03	ci right 7.460505e-03	k: 11132	n:1520000
KS ci ratio: 2.731007e-01	ci left: 1.170381e-04	ci right 1.546469e-04	k: 205	n:1520000
HS6ST1   1520000 perm   1149 sec   (1323 perm/sec)   p_kst 1.348684e-04   p_cons 7.323684e-03   p_joint 1.644737e-04

Joint ci ratio: 2.469164e-01	ci left: 1.443844e-04	ci right 1.856513e-04	k: 251	n:1530000
Cons ci ratio: 3.688478e-02	ci left: 7.192918e-03	ci right 7.463854e-03	k: 11211	n:1530000
KS ci ratio: 2.724403e-01	ci left: 1.168821e-04	ci right 1.543343e-04	k: 206	n:1530000
HS6ST1   1530000 perm   1162 sec   (1317 perm/sec)   p_kst 1.346405e-04   p_cons 7.327451e-03   p_joint 1.640523e-04

Joint ci ratio: 2.464280e-01	ci left: 1.440561e-04	ci right 1.851352e-04	k: 252	n:1540000
Cons ci ratio: 3.676529e-02	ci left: 7.193177e-03	ci right 7.463226e-03	k: 11284	n:1540000
KS ci ratio: 2.717847e-01	ci left: 1.167281e-04	ci right 1.540257e-04	k: 207	n:1540000
HS6ST1   1540000 perm   1175 sec   (1311 perm/sec)   p_kst 1.344156e-04   p_cons 7.327273e-03   p_joint 1.636364e-04

Joint ci ratio: 2.464281e-01	ci left: 1.431267e-04	ci right 1.839408e-04	k: 252	n:1550000
Cons ci ratio: 3.665021e-02	ci left: 7.192155e-03	ci right 7.461303e-03	k: 11355	n:1550000
KS ci ratio: 2.717848e-01	ci left: 1.159750e-04	ci right 1.530320e-04	k: 207	n:1550000
HS6ST1   1550000 perm   1188 sec   (1305 perm/sec)   p_kst 1.335484e-04   p_cons 7.325806e-03   p_joint 1.625806e-04

Joint ci ratio: 2.459426e-01	ci left: 1.428107e-04	ci right 1.834421e-04	k: 253	n:1560000
Cons ci ratio: 3.652010e-02	ci left: 7.197500e-03	ci right 7.465872e-03	k: 11436	n:1560000
KS ci ratio: 2.711338e-01	ci left: 1.158290e-04	ci right 1.527356e-04	k: 208	n:1560000
HS6ST1   1560000 perm   1201 sec   (1299 perm/sec)   p_kst 1.333333e-04   p_cons 7.330769e-03   p_joint 1.621795e-04

Joint ci ratio: 2.445028e-01	ci left: 1.436945e-04	ci right 1.843017e-04	k: 256	n:1570000
Cons ci ratio: 3.641846e-02	ci left: 7.192049e-03	ci right 7.459455e-03	k: 11500	n:1570000
KS ci ratio: 2.692084e-01	ci left: 1.168727e-04	ci right 1.538027e-04	k: 211	n:1570000
HS6ST1   1570000 perm   1214 sec   (1293 perm/sec)   p_kst 1.343949e-04   p_cons 7.324841e-03   p_joint 1.630573e-04

Joint ci ratio: 2.440285e-01	ci left: 1.433792e-04	ci right 1.838068e-04	k: 257	n:1580000
Cons ci ratio: 3.628922e-02	ci left: 7.197957e-03	ci right 7.464614e-03	k: 11582	n:1580000
KS ci ratio: 2.685758e-01	ci left: 1.167232e-04	ci right 1.535047e-04	k: 212	n:1580000
HS6ST1   1580000 perm   1227 sec   (1287 perm/sec)   p_kst 1.341772e-04   p_cons 7.330380e-03   p_joint 1.626582e-04

Joint ci ratio: 2.435570e-01	ci left: 1.430679e-04	ci right 1.833181e-04	k: 258	n:1590000
Cons ci ratio: 3.616291e-02	ci left: 7.203169e-03	ci right 7.469071e-03	k: 11663	n:1590000
KS ci ratio: 2.679476e-01	ci left: 1.165757e-04	ci right 1.532104e-04	k: 213	n:1590000
HS6ST1   1590000 perm   1241 sec   (1281 perm/sec)   p_kst 1.339623e-04   p_cons 7.335220e-03   p_joint 1.622642e-04

Joint ci ratio: 2.435572e-01	ci left: 1.421738e-04	ci right 1.821724e-04	k: 258	n:1600000
Cons ci ratio: 3.604409e-02	ci left: 7.205840e-03	ci right 7.470948e-03	k: 11740	n:1600000
KS ci ratio: 2.679477e-01	ci left: 1.158471e-04	ci right 1.522529e-04	k: 213	n:1600000
HS6ST1   1600000 perm   1255 sec   (1275 perm/sec)   p_kst 1.331250e-04   p_cons 7.337500e-03   p_joint 1.612500e-04

Joint ci ratio: 2.407838e-01	ci left: 1.447913e-04	ci right 1.849932e-04	k: 264	n:1610000
Cons ci ratio: 3.594329e-02	ci left: 7.201708e-03	ci right 7.465908e-03	k: 11806	n:1610000
KS ci ratio: 2.654778e-01	ci left: 1.174460e-04	ci right 1.539574e-04	k: 217	n:1610000
HS6ST1   1610000 perm   1269 sec   (1269 perm/sec)   p_kst 1.347826e-04   p_cons 7.332919e-03   p_joint 1.639752e-04

Joint ci ratio: 2.394322e-01	ci left: 1.456380e-04	ci right 1.858143e-04	k: 267	n:1620000
Cons ci ratio: 3.582358e-02	ci left: 7.205581e-03	ci right 7.469025e-03	k: 11885	n:1620000
KS ci ratio: 2.636697e-01	ci left: 1.184500e-04	ci right 1.549814e-04	k: 220	n:1620000
HS6ST1   1620000 perm   1283 sec   (1263 perm/sec)   p_kst 1.358025e-04   p_cons 7.336420e-03   p_joint 1.648148e-04

Joint ci ratio: 2.389868e-01	ci left: 1.453212e-04	ci right 1.853246e-04	k: 268	n:1630000
Cons ci ratio: 3.572010e-02	ci left: 7.203327e-03	ci right 7.465912e-03	k: 11954	n:1630000
KS ci ratio: 2.630752e-01	ci left: 1.182963e-04	ci right 1.546845e-04	k: 221	n:1630000
HS6ST1   1630000 perm   1296 sec   (1257 perm/sec)   p_kst 1.355828e-04   p_cons 7.333742e-03   p_joint 1.644172e-04

Joint ci ratio: 2.376651e-01	ci left: 1.461552e-04	ci right 1.861328e-04	k: 271	n:1640000
Cons ci ratio: 3.561452e-02	ci left: 7.202311e-03	ci right 7.464067e-03	k: 12025	n:1640000
KS ci ratio: 2.618980e-01	ci left: 1.187143e-04	ci right 1.550409e-04	k: 223	n:1640000
HS6ST1   1640000 perm   1310 sec   (1252 perm/sec)   p_kst 1.359756e-04   p_cons 7.332317e-03   p_joint 1.652439e-04

Joint ci ratio: 2.363651e-01	ci left: 1.469796e-04	ci right 1.869307e-04	k: 274	n:1650000
Cons ci ratio: 3.551876e-02	ci left: 7.197704e-03	ci right 7.458575e-03	k: 12090	n:1650000
KS ci ratio: 2.601616e-01	ci left: 1.196941e-04	ci right 1.560381e-04	k: 226	n:1650000
HS6ST1   1650000 perm   1324 sec   (1246 perm/sec)   p_kst 1.369697e-04   p_cons 7.327273e-03   p_joint 1.660606e-04

Joint ci ratio: 2.355103e-01	ci left: 1.472278e-04	ci right 1.870805e-04	k: 276	n:1660000
Cons ci ratio: 3.542082e-02	ci left: 7.194348e-03	ci right 7.454364e-03	k: 12157	n:1660000
KS ci ratio: 2.595904e-01	ci left: 1.195362e-04	ci right 1.557397e-04	k: 227	n:1660000
HS6ST1   1660000 perm   1339 sec   (1240 perm/sec)   p_kst 1.367470e-04   p_cons 7.323494e-03   p_joint 1.662651e-04

Joint ci ratio: 2.454611e-01	ci left: 1.339658e-04	ci right 1.719948e-04	k: 254	n:1670000
Cons ci ratio: 3.531642e-02	ci left: 7.194000e-03	ci right 7.453222e-03	k: 12229	n:1670000
KS ci ratio: 2.584593e-01	ci left: 1.199403e-04	ci right 1.560823e-04	k: 229	n:1670000
HS6ST1   1670000 perm   1353 sec   (1234 perm/sec)   p_kst 1.371257e-04   p_cons 7.322754e-03   p_joint 1.520958e-04

Joint ci ratio: 2.449813e-01	ci left: 1.337271e-04	ci right 1.716028e-04	k: 255	n:1680000
Cons ci ratio: 3.521293e-02	ci left: 7.193658e-03	ci right 7.452092e-03	k: 12301	n:1680000
KS ci ratio: 2.578993e-01	ci left: 1.197830e-04	ci right 1.557869e-04	k: 230	n:1680000
HS6ST1   1680000 perm   1367 sec   (1229 perm/sec)   p_kst 1.369048e-04   p_cons 7.322024e-03   p_joint 1.517857e-04

Joint ci ratio: 2.440298e-01	ci left: 1.340467e-04	ci right 1.718432e-04	k: 257	n:1690000
Cons ci ratio: 3.508750e-02	ci left: 7.202706e-03	ci right 7.460525e-03	k: 12389	n:1690000
KS ci ratio: 2.567900e-01	ci left: 1.201814e-04	ci right 1.561247e-04	k: 232	n:1690000
HS6ST1   1690000 perm   1382 sec   (1223 perm/sec)   p_kst 1.372781e-04   p_cons 7.330769e-03   p_joint 1.520710e-04

Joint ci ratio: 2.430894e-01	ci left: 1.343629e-04	ci right 1.720805e-04	k: 259	n:1700000
Cons ci ratio: 3.497753e-02	ci left: 7.205818e-03	ci right 7.462924e-03	k: 12467	n:1700000
KS ci ratio: 2.556949e-01	ci left: 1.205754e-04	ci right 1.564581e-04	k: 234	n:1700000
HS6ST1   1700000 perm   1397 sec   (1217 perm/sec)   p_kst 1.376471e-04   p_cons 7.333529e-03   p_joint 1.523529e-04

Joint ci ratio: 2.426233e-01	ci left: 1.341264e-04	ci right 1.716945e-04	k: 260	n:1710000
Cons ci ratio: 3.486298e-02	ci left: 7.211213e-03	ci right 7.467652e-03	k: 12549	n:1710000
KS ci ratio: 2.551526e-01	ci left: 1.204176e-04	ci right 1.561653e-04	k: 235	n:1710000
HS6ST1   1710000 perm   1411 sec   (1212 perm/sec)   p_kst 1.374269e-04   p_cons 7.338596e-03   p_joint 1.520468e-04

Joint ci ratio: 2.421599e-01	ci left: 1.338926e-04	ci right 1.713129e-04	k: 261	n:1720000
Cons ci ratio: 3.477591e-02	ci left: 7.205596e-03	ci right 7.461183e-03	k: 12612	n:1720000
KS ci ratio: 2.546137e-01	ci left: 1.202617e-04	ci right 1.558759e-04	k: 236	n:1720000
HS6ST1   1720000 perm   1426 sec   (1206 perm/sec)   p_kst 1.372093e-04   p_cons 7.332558e-03   p_joint 1.517442e-04

Joint ci ratio: 2.416991e-01	ci left: 1.336617e-04	ci right 1.709357e-04	k: 262	n:1730000
Cons ci ratio: 3.466608e-02	ci left: 7.209787e-03	ci right 7.464699e-03	k: 12692	n:1730000
KS ci ratio: 2.540783e-01	ci left: 1.201078e-04	ci right 1.555896e-04	k: 237	n:1730000
HS6ST1   1730000 perm   1440 sec   (1201 perm/sec)   p_kst 1.369942e-04   p_cons 7.336416e-03   p_joint 1.514451e-04

Joint ci ratio: 2.412409e-01	ci left: 1.334335e-04	ci right 1.705627e-04	k: 263	n:1740000
Cons ci ratio: 3.457911e-02	ci left: 7.204815e-03	ci right 7.458898e-03	k: 12756	n:1740000
KS ci ratio: 2.535462e-01	ci left: 1.199557e-04	ci right 1.553066e-04	k: 238	n:1740000
HS6ST1   1740000 perm   1455 sec   (1196 perm/sec)   p_kst 1.367816e-04   p_cons 7.331034e-03   p_joint 1.511494e-04

Joint ci ratio: 2.403323e-01	ci left: 1.337449e-04	ci right 1.707997e-04	k: 265	n:1750000
Cons ci ratio: 3.448466e-02	ci left: 7.203299e-03	ci right 7.456621e-03	k: 12826	n:1750000
KS ci ratio: 2.530175e-01	ci left: 1.198054e-04	ci right 1.550268e-04	k: 239	n:1750000
HS6ST1   1750000 perm   1470 sec   (1190 perm/sec)   p_kst 1.365714e-04   p_cons 7.329143e-03   p_joint 1.514286e-04

Joint ci ratio: 2.398818e-01	ci left: 1.335190e-04	ci right 1.704316e-04	k: 266	n:1760000
Cons ci ratio: 3.436683e-02	ci left: 7.211941e-03	ci right 7.464684e-03	k: 12914	n:1760000
KS ci ratio: 2.530176e-01	ci left: 1.191246e-04	ci right 1.541460e-04	k: 239	n:1760000
HS6ST1   1760000 perm   1485 sec   (1185 perm/sec)   p_kst 1.357955e-04   p_cons 7.337500e-03   p_joint 1.511364e-04

Joint ci ratio: 2.381047e-01	ci left: 1.348892e-04	ci right 1.718636e-04	k: 270	n:1770000
Cons ci ratio: 3.426480e-02	ci left: 7.214325e-03	ci right 7.466387e-03	k: 12991	n:1770000
KS ci ratio: 2.514508e-01	ci left: 1.200394e-04	ci right 1.550769e-04	k: 242	n:1770000
HS6ST1   1770000 perm   1500 sec   (1180 perm/sec)   p_kst 1.367232e-04   p_cons 7.339548e-03   p_joint 1.525424e-04

Joint ci ratio: 2.376667e-01	ci left: 1.346597e-04	ci right 1.714933e-04	k: 271	n:1780000
Cons ci ratio: 3.415051e-02	ci left: 7.222254e-03	ci right 7.473735e-03	k: 13078	n:1780000
KS ci ratio: 2.509350e-01	ci left: 1.198915e-04	ci right 1.548028e-04	k: 243	n:1780000
HS6ST1   1780000 perm   1515 sec   (1175 perm/sec)   p_kst 1.365169e-04   p_cons 7.347191e-03   p_joint 1.522472e-04

Joint ci ratio: 2.372310e-01	ci left: 1.344329e-04	ci right 1.711271e-04	k: 272	n:1790000
Cons ci ratio: 3.405561e-02	ci left: 7.222341e-03	ci right 7.473112e-03	k: 13151	n:1790000
KS ci ratio: 2.504224e-01	ci left: 1.197452e-04	ci right 1.545317e-04	k: 244	n:1790000
HS6ST1   1790000 perm   1530 sec   (1170 perm/sec)   p_kst 1.363128e-04   p_cons 7.346927e-03   p_joint 1.519553e-04

Joint ci ratio: 2.372311e-01	ci left: 1.336860e-04	ci right 1.701764e-04	k: 272	n:1800000
Cons ci ratio: 3.398350e-02	ci left: 7.213063e-03	ci right 7.462971e-03	k: 13207	n:1800000
KS ci ratio: 2.504225e-01	ci left: 1.190800e-04	ci right 1.536732e-04	k: 244	n:1800000
HS6ST1   1800000 perm   1545 sec   (1165 perm/sec)   p_kst 1.355556e-04   p_cons 7.337222e-03   p_joint 1.511111e-04

Joint ci ratio: 2.372312e-01	ci left: 1.329474e-04	ci right 1.692362e-04	k: 272	n:1810000
Cons ci ratio: 3.388613e-02	ci left: 7.214844e-03	ci right 7.464084e-03	k: 13283	n:1810000
KS ci ratio: 2.504226e-01	ci left: 1.184221e-04	ci right 1.528241e-04	k: 244	n:1810000
HS6ST1   1810000 perm   1560 sec   (1160 perm/sec)   p_kst 1.348066e-04   p_cons 7.338674e-03   p_joint 1.502762e-04

Joint ci ratio: 2.346662e-01	ci left: 1.353188e-04	ci right 1.717975e-04	k: 278	n:1820000
Cons ci ratio: 3.378576e-02	ci left: 7.218242e-03	ci right 7.466846e-03	k: 13362	n:1820000
KS ci ratio: 2.479055e-01	ci left: 1.203471e-04	ci right 1.549029e-04	k: 249	n:1820000
HS6ST1   1820000 perm   1576 sec   (1155 perm/sec)   p_kst 1.368132e-04   p_cons 7.341758e-03   p_joint 1.527473e-04

Joint ci ratio: 2.355121e-01	ci left: 1.335508e-04	ci right 1.697016e-04	k: 276	n:1830000
Cons ci ratio: 3.369512e-02	ci left: 7.217810e-03	ci right 7.465720e-03	k: 13434	n:1830000
KS ci ratio: 2.474112e-01	ci left: 1.202020e-04	ci right 1.546367e-04	k: 250	n:1830000
HS6ST1   1830000 perm   1591 sec   (1150 perm/sec)   p_kst 1.366120e-04   p_cons 7.340984e-03   p_joint 1.508197e-04

Joint ci ratio: 2.101141e-01	ci left: 1.692658e-04	ci right 2.095089e-04	k: 347	n:1840000
Cons ci ratio: 3.360145e-02	ci left: 7.219001e-03	ci right 7.466249e-03	k: 13509	n:1840000
KS ci ratio: 2.154432e-01	ci left: 1.605188e-04	ci right 1.997784e-04	k: 330	n:1840000
HS6ST1   1840000 perm   1607 sec   (1145 perm/sec)   p_kst 1.793478e-04   p_cons 7.341848e-03   p_joint 1.885870e-04

Joint ci ratio: 2.092142e-01	ci left: 1.698873e-04	ci right 2.100830e-04	k: 350	n:1850000
Cons ci ratio: 3.350234e-02	ci left: 7.222860e-03	ci right 7.469497e-03	k: 13589	n:1850000
KS ci ratio: 2.144734e-01	ci left: 1.611855e-04	ci right 2.004072e-04	k: 333	n:1850000
HS6ST1   1850000 perm   1623 sec   (1140 perm/sec)   p_kst 1.800000e-04   p_cons 7.345405e-03   p_joint 1.891892e-04

Joint ci ratio: 2.080321e-01	ci left: 1.710121e-04	ci right 2.112163e-04	k: 354	n:1860000
Cons ci ratio: 3.342875e-02	ci left: 7.216015e-03	ci right 7.461866e-03	k: 13649	n:1860000
KS ci ratio: 2.132005e-01	ci left: 1.623543e-04	ci right 2.015953e-04	k: 337	n:1860000
HS6ST1   1860000 perm   1639 sec   (1135 perm/sec)   p_kst 1.811828e-04   p_cons 7.338172e-03   p_joint 1.903226e-04

Joint ci ratio: 2.071585e-01	ci left: 1.716185e-04	ci right 2.117743e-04	k: 357	n:1870000
Cons ci ratio: 3.332994e-02	ci left: 7.220381e-03	ci right 7.465640e-03	k: 13730	n:1870000
KS ci ratio: 2.122605e-01	ci left: 1.630049e-04	ci right 2.022069e-04	k: 340	n:1870000
HS6ST1   1870000 perm   1655 sec   (1130 perm/sec)   p_kst 1.818182e-04   p_cons 7.342246e-03   p_joint 1.909091e-04

Joint ci ratio: 2.062959e-01	ci left: 1.722188e-04	ci right 2.123261e-04	k: 360	n:1880000
Cons ci ratio: 3.324048e-02	ci left: 7.221009e-03	ci right 7.465618e-03	k: 13804	n:1880000
KS ci ratio: 2.113328e-01	ci left: 1.636489e-04	ci right 2.028116e-04	k: 343	n:1880000
HS6ST1   1880000 perm   1670 sec   (1126 perm/sec)   p_kst 1.824468e-04   p_cons 7.342553e-03   p_joint 1.914894e-04

Joint ci ratio: 2.062960e-01	ci left: 1.713076e-04	ci right 2.112027e-04	k: 360	n:1890000
Cons ci ratio: 3.313972e-02	ci left: 7.226879e-03	ci right 7.470931e-03	k: 13888	n:1890000
KS ci ratio: 2.113329e-01	ci left: 1.627831e-04	ci right 2.017385e-04	k: 343	n:1890000
HS6ST1   1890000 perm   1686 sec   (1121 perm/sec)   p_kst 1.814815e-04   p_cons 7.348148e-03   p_joint 1.904762e-04

Joint ci ratio: 2.057269e-01	ci left: 1.714043e-04	ci right 2.111980e-04	k: 362	n:1900000
Cons ci ratio: 3.303272e-02	ci left: 7.235820e-03	ci right 7.479370e-03	k: 13978	n:1900000
KS ci ratio: 2.107213e-01	ci left: 1.629233e-04	ci right 2.017849e-04	k: 345	n:1900000
HS6ST1   1900000 perm   1702 sec   (1117 perm/sec)   p_kst 1.815789e-04   p_cons 7.356842e-03   p_joint 1.905263e-04

Joint ci ratio: 2.048820e-01	ci left: 1.719968e-04	ci right 2.117435e-04	k: 365	n:1910000
Cons ci ratio: 3.296099e-02	ci left: 7.229609e-03	ci right 7.472412e-03	k: 14039	n:1910000
KS ci ratio: 2.098136e-01	ci left: 1.635583e-04	ci right 2.023817e-04	k: 348	n:1910000
HS6ST1   1910000 perm   1717 sec   (1112 perm/sec)   p_kst 1.821990e-04   p_cons 7.350262e-03   p_joint 1.910995e-04

Joint ci ratio: 2.043245e-01	ci left: 1.720893e-04	ci right 2.117357e-04	k: 367	n:1920000
Cons ci ratio: 3.288151e-02	ci left: 7.227080e-03	ci right 7.469201e-03	k: 14107	n:1920000
KS ci ratio: 2.092149e-01	ci left: 1.636934e-04	ci right 2.024238e-04	k: 350	n:1920000
HS6ST1   1920000 perm   1733 sec   (1108 perm/sec)   p_kst 1.822917e-04   p_cons 7.347396e-03   p_joint 1.911458e-04

Joint ci ratio: 2.040475e-01	ci left: 1.716893e-04	ci right 2.111832e-04	k: 368	n:1930000
Cons ci ratio: 3.280027e-02	ci left: 7.225606e-03	ci right 7.467068e-03	k: 14177	n:1930000
KS ci ratio: 2.089176e-01	ci left: 1.633363e-04	ci right 2.019202e-04	k: 351	n:1930000
HS6ST1   1930000 perm   1749 sec   (1103 perm/sec)   p_kst 1.818653e-04   p_cons 7.345596e-03   p_joint 1.906736e-04

Joint ci ratio: 2.037716e-01	ci left: 1.712935e-04	ci right 2.106363e-04	k: 369	n:1940000
Cons ci ratio: 3.272310e-02	ci left: 7.222613e-03	ci right 7.463397e-03	k: 14244	n:1940000
KS ci ratio: 2.080329e-01	ci left: 1.639600e-04	ci right 2.025064e-04	k: 354	n:1940000
HS6ST1   1940000 perm   1766 sec   (1099 perm/sec)   p_kst 1.824742e-04   p_cons 7.342268e-03   p_joint 1.902062e-04

Joint ci ratio: 2.032231e-01	ci left: 1.713884e-04	ci right 2.106340e-04	k: 371	n:1950000
Cons ci ratio: 3.264072e-02	ci left: 7.222196e-03	ci right 7.462348e-03	k: 14316	n:1950000
KS ci ratio: 2.074494e-01	ci left: 1.640915e-04	ci right 2.025468e-04	k: 356	n:1950000
HS6ST1   1950000 perm   1782 sec   (1094 perm/sec)   p_kst 1.825641e-04   p_cons 7.341538e-03   p_joint 1.902564e-04

Joint ci ratio: 2.021391e-01	ci left: 1.724512e-04	ci right 2.117036e-04	k: 375	n:1960000
Cons ci ratio: 3.254871e-02	ci left: 7.226338e-03	ci right 7.465938e-03	k: 14397	n:1960000
KS ci ratio: 2.062967e-01	ci left: 1.651894e-04	ci right 2.036598e-04	k: 360	n:1960000
HS6ST1   1960000 perm   1799 sec   (1090 perm/sec)   p_kst 1.836735e-04   p_cons 7.345408e-03   p_joint 1.913265e-04

Joint ci ratio: 2.016036e-01	ci left: 1.725398e-04	ci right 2.116954e-04	k: 377	n:1970000
Cons ci ratio: 3.245296e-02	ci left: 7.232453e-03	ci right 7.471537e-03	k: 14482	n:1970000
KS ci ratio: 2.057276e-01	ci left: 1.653137e-04	ci right 2.036935e-04	k: 362	n:1970000
HS6ST1   1970000 perm   1815 sec   (1085 perm/sec)   p_kst 1.837563e-04   p_cons 7.351269e-03   p_joint 1.913706e-04

Joint ci ratio: 2.002832e-01	ci left: 1.740666e-04	ci right 2.132784e-04	k: 382	n:1980000
Cons ci ratio: 3.237597e-02	ci left: 7.230491e-03	ci right 7.468933e-03	k: 14551	n:1980000
KS ci ratio: 2.043251e-01	ci left: 1.668744e-04	ci right 2.053195e-04	k: 367	n:1980000
HS6ST1   1980000 perm   1831 sec   (1081 perm/sec)   p_kst 1.853535e-04   p_cons 7.348990e-03   p_joint 1.929293e-04

Joint ci ratio: 1.997623e-01	ci left: 1.741465e-04	ci right 2.132619e-04	k: 384	n:1990000
Cons ci ratio: 3.227840e-02	ci left: 7.238021e-03	ci right 7.475979e-03	k: 14639	n:1990000
KS ci ratio: 2.037721e-01	ci left: 1.669896e-04	ci right 2.053440e-04	k: 369	n:1990000
HS6ST1   1990000 perm   1848 sec   (1077 perm/sec)   p_kst 1.854271e-04   p_cons 7.356281e-03   p_joint 1.929648e-04

Joint ci ratio: 1.992455e-01	ci left: 1.742259e-04	ci right 2.132455e-04	k: 386	n:2000000
Cons ci ratio: 3.220705e-02	ci left: 7.234069e-03	ci right 7.471361e-03	k: 14704	n:2000000
KS ci ratio: 2.032236e-01	ci left: 1.671037e-04	ci right 2.053682e-04	k: 371	n:2000000
HS6ST1   2000000 perm   1864 sec   (1073 perm/sec)   p_kst 1.855000e-04   p_cons 7.352000e-03   p_joint 1.930000e-04

Joint ci ratio: 1.987326e-01	ci left: 1.743045e-04	ci right 2.132291e-04	k: 388	n:2010000
Cons ci ratio: 3.213508e-02	ci left: 7.230650e-03	ci right 7.467290e-03	k: 14770	n:2010000
KS ci ratio: 2.026795e-01	ci left: 1.672168e-04	ci right 2.053920e-04	k: 373	n:2010000
HS6ST1   2010000 perm   1881 sec   (1069 perm/sec)   p_kst 1.855721e-04   p_cons 7.348259e-03   p_joint 1.930348e-04

Joint ci ratio: 1.982237e-01	ci left: 1.743825e-04	ci right 2.132127e-04	k: 390	n:2020000
Cons ci ratio: 3.203641e-02	ci left: 7.239543e-03	ci right 7.475734e-03	k: 14861	n:2020000
KS ci ratio: 2.021397e-01	ci left: 1.673289e-04	ci right 2.054154e-04	k: 375	n:2020000
HS6ST1   2020000 perm   1899 sec   (1064 perm/sec)   p_kst 1.856436e-04   p_cons 7.356931e-03   p_joint 1.930693e-04

Joint ci ratio: 1.977187e-01	ci left: 1.744599e-04	ci right 2.131964e-04	k: 392	n:2030000
Cons ci ratio: 3.195048e-02	ci left: 7.242974e-03	ci right 7.478632e-03	k: 14941	n:2030000
KS ci ratio: 2.016042e-01	ci left: 1.674400e-04	ci right 2.054385e-04	k: 377	n:2030000
HS6ST1   2030000 perm   1916 sec   (1060 perm/sec)   p_kst 1.857143e-04   p_cons 7.360099e-03   p_joint 1.931034e-04

Joint ci ratio: 1.972175e-01	ci left: 1.745366e-04	ci right 2.131801e-04	k: 394	n:2040000
Cons ci ratio: 3.186844e-02	ci left: 7.244914e-03	ci right 7.480018e-03	k: 15018	n:2040000
KS ci ratio: 2.010730e-01	ci left: 1.675502e-04	ci right 2.054612e-04	k: 379	n:2040000
HS6ST1   2040000 perm   1933 sec   (1056 perm/sec)   p_kst 1.857843e-04   p_cons 7.361765e-03   p_joint 1.931373e-04

Joint ci ratio: 1.967201e-01	ci left: 1.746127e-04	ci right 2.131639e-04	k: 396	n:2050000
Cons ci ratio: 3.178704e-02	ci left: 7.246835e-03	ci right 7.481390e-03	k: 15095	n:2050000
KS ci ratio: 2.005459e-01	ci left: 1.676594e-04	ci right 2.054835e-04	k: 381	n:2050000
HS6ST1   2050000 perm   1950 sec   (1051 perm/sec)   p_kst 1.858537e-04   p_cons 7.363415e-03   p_joint 1.931707e-04

Joint ci ratio: 1.959809e-01	ci left: 1.751498e-04	ci right 2.136569e-04	k: 399	n:2060000
Cons ci ratio: 3.170625e-02	ci left: 7.248738e-03	ci right 7.482747e-03	k: 15172	n:2060000
KS ci ratio: 2.000230e-01	ci left: 1.677677e-04	ci right 2.055055e-04	k: 383	n:2060000
HS6ST1   2060000 perm   1967 sec   (1048 perm/sec)   p_kst 1.859223e-04   p_cons 7.365049e-03   p_joint 1.936893e-04

Joint ci ratio: 1.957364e-01	ci left: 1.747631e-04	ci right 2.131315e-04	k: 400	n:2070000
Cons ci ratio: 3.162295e-02	ci left: 7.252061e-03	ci right 7.485552e-03	k: 15252	n:2070000
KS ci ratio: 2.000231e-01	ci left: 1.669573e-04	ci right 2.045127e-04	k: 383	n:2070000
HS6ST1   2070000 perm   1984 sec   (1044 perm/sec)   p_kst 1.850242e-04   p_cons 7.368116e-03   p_joint 1.932367e-04

Joint ci ratio: 1.950083e-01	ci left: 1.752946e-04	ci right 2.136196e-04	k: 403	n:2080000
Cons ci ratio: 3.154133e-02	ci left: 7.254877e-03	ci right 7.487844e-03	k: 15331	n:2080000
KS ci ratio: 1.995042e-01	ci left: 1.670680e-04	ci right 2.045391e-04	k: 385	n:2080000
HS6ST1   2080000 perm   2000 sec   (1040 perm/sec)   p_kst 1.850962e-04   p_cons 7.370673e-03   p_joint 1.937500e-04

Joint ci ratio: 1.947674e-01	ci left: 1.749110e-04	ci right 2.130993e-04	k: 404	n:2090000
Cons ci ratio: 3.145417e-02	ci left: 7.260514e-03	ci right 7.493007e-03	k: 15416	n:2090000
KS ci ratio: 1.992463e-01	ci left: 1.667232e-04	ci right 2.040627e-04	k: 386	n:2090000
HS6ST1   2090000 perm   2017 sec   (1036 perm/sec)   p_kst 1.846890e-04   p_cons 7.376077e-03   p_joint 1.933014e-04

Joint ci ratio: 1.942883e-01	ci left: 1.749841e-04	ci right 2.130833e-04	k: 406	n:2100000
Cons ci ratio: 3.138610e-02	ci left: 7.257594e-03	ci right 7.489481e-03	k: 15483	n:2100000
KS ci ratio: 1.987334e-01	ci left: 1.668343e-04	ci right 2.040908e-04	k: 388	n:2100000
HS6ST1   2100000 perm   2035 sec   (1032 perm/sec)   p_kst 1.847619e-04   p_cons 7.372857e-03   p_joint 1.933333e-04

Joint ci ratio: 1.942884e-01	ci left: 1.741548e-04	ci right 2.120734e-04	k: 406	n:2110000
Cons ci ratio: 3.129415e-02	ci left: 7.265989e-03	ci right 7.497452e-03	k: 15574	n:2110000
KS ci ratio: 1.987335e-01	ci left: 1.660436e-04	ci right 2.031235e-04	k: 388	n:2110000
HS6ST1   2110000 perm   2053 sec   (1028 perm/sec)   p_kst 1.838863e-04   p_cons 7.381043e-03   p_joint 1.924171e-04

Joint ci ratio: 1.938128e-01	ci left: 1.742309e-04	ci right 2.120622e-04	k: 408	n:2120000
Cons ci ratio: 3.121906e-02	ci left: 7.266816e-03	ci right 7.497740e-03	k: 15649	n:2120000
KS ci ratio: 1.982246e-01	ci left: 1.661569e-04	ci right 2.031556e-04	k: 390	n:2120000
HS6ST1   2120000 perm   2070 sec   (1024 perm/sec)   p_kst 1.839623e-04   p_cons 7.381604e-03   p_joint 1.924528e-04

Joint ci ratio: 1.933406e-01	ci left: 1.743063e-04	ci right 2.120510e-04	k: 410	n:2130000
Cons ci ratio: 3.115450e-02	ci left: 7.262978e-03	ci right 7.493294e-03	k: 15714	n:2130000
KS ci ratio: 1.974684e-01	ci left: 1.667155e-04	ci right 2.036800e-04	k: 393	n:2130000
HS6ST1   2130000 perm   2087 sec   (1020 perm/sec)   p_kst 1.845070e-04   p_cons 7.377465e-03   p_joint 1.924883e-04

Joint ci ratio: 1.938130e-01	ci left: 1.726025e-04	ci right 2.100803e-04	k: 408	n:2140000
Cons ci ratio: 3.108338e-02	ci left: 7.262422e-03	ci right 7.492185e-03	k: 15786	n:2140000
KS ci ratio: 1.962271e-01	ci left: 1.681577e-04	ci right 2.051796e-04	k: 398	n:2140000
HS6ST1   2140000 perm   2105 sec   (1017 perm/sec)   p_kst 1.859813e-04   p_cons 7.376636e-03   p_joint 1.906542e-04

Joint ci ratio: 1.935765e-01	ci left: 1.722423e-04	ci right 2.095909e-04	k: 409	n:2150000
Cons ci ratio: 3.100488e-02	ci left: 7.265564e-03	ci right 7.494836e-03	k: 15866	n:2150000
KS ci ratio: 1.959817e-01	ci left: 1.678179e-04	ci right 2.047132e-04	k: 399	n:2150000
HS6ST1   2150000 perm   2122 sec   (1013 perm/sec)   p_kst 1.855814e-04   p_cons 7.379535e-03   p_joint 1.902326e-04

Joint ci ratio: 1.919447e-01	ci left: 1.745292e-04	ci right 2.120175e-04	k: 416	n:2160000
Cons ci ratio: 3.093381e-02	ci left: 7.265462e-03	ci right 7.494195e-03	k: 15939	n:2160000
KS ci ratio: 1.945280e-01	ci left: 1.696830e-04	ci right 2.066789e-04	k: 405	n:2160000
HS6ST1   2160000 perm   2140 sec   (1009 perm/sec)   p_kst 1.875000e-04   p_cons 7.379167e-03   p_joint 1.925926e-04

Joint ci ratio: 1.917150e-01	ci left: 1.741637e-04	ci right 2.115234e-04	k: 417	n:2170000
Cons ci ratio: 3.086614e-02	ci left: 7.263989e-03	ci right 7.492167e-03	k: 16009	n:2170000
KS ci ratio: 1.942889e-01	ci left: 1.693394e-04	ci right 2.062097e-04	k: 406	n:2170000
HS6ST1   2170000 perm   2160 sec   (1005 perm/sec)   p_kst 1.870968e-04   p_cons 7.377419e-03   p_joint 1.921659e-04

Joint ci ratio: 1.910306e-01	ci left: 1.746750e-04	ci right 2.119951e-04	k: 420	n:2180000
Cons ci ratio: 3.080180e-02	ci left: 7.261165e-03	ci right 7.488771e-03	k: 16076	n:2180000
KS ci ratio: 1.935768e-01	ci left: 1.698720e-04	ci right 2.067066e-04	k: 409	n:2180000
HS6ST1   2180000 perm   2177 sec   (1001 perm/sec)   p_kst 1.876147e-04   p_cons 7.374312e-03   p_joint 1.926606e-04

Joint ci ratio: 1.908042e-01	ci left: 1.743121e-04	ci right 2.115055e-04	k: 421	n:2190000
Cons ci ratio: 3.073020e-02	ci left: 7.261992e-03	ci right 7.489085e-03	k: 16151	n:2190000
KS ci ratio: 1.931063e-01	ci left: 1.699653e-04	ci right 2.067202e-04	k: 411	n:2190000
HS6ST1   2190000 perm   2195 sec   (998 perm/sec)   p_kst 1.876712e-04   p_cons 7.374886e-03   p_joint 1.922374e-04

Joint ci ratio: 1.903536e-01	ci left: 1.743855e-04	ci right 2.114965e-04	k: 423	n:2200000
Cons ci ratio: 3.066385e-02	ci left: 7.260557e-03	ci right 7.487106e-03	k: 16221	n:2200000
KS ci ratio: 1.926393e-01	ci left: 1.700580e-04	ci right 2.067334e-04	k: 413	n:2200000
HS6ST1   2200000 perm   2213 sec   (994 perm/sec)   p_kst 1.877273e-04   p_cons 7.373182e-03   p_joint 1.922727e-04

Joint ci ratio: 1.903537e-01	ci left: 1.735965e-04	ci right 2.105395e-04	k: 423	n:2210000
Cons ci ratio: 3.059226e-02	ci left: 7.261829e-03	ci right 7.487881e-03	k: 16297	n:2210000
KS ci ratio: 1.924071e-01	ci left: 1.697191e-04	ci right 2.062723e-04	k: 414	n:2210000
HS6ST1   2210000 perm   2231 sec   (990 perm/sec)   p_kst 1.873303e-04   p_cons 7.374208e-03   p_joint 1.914027e-04

Joint ci ratio: 1.896838e-01	ci left: 1.741016e-04	ci right 2.110067e-04	k: 426	n:2220000
Cons ci ratio: 3.051459e-02	ci left: 7.266221e-03	ci right 7.491824e-03	k: 16380	n:2220000
KS ci ratio: 1.914864e-01	ci left: 1.706699e-04	ci right 2.072314e-04	k: 418	n:2220000
HS6ST1   2220000 perm   2250 sec   (987 perm/sec)   p_kst 1.882883e-04   p_cons 7.378378e-03   p_joint 1.918919e-04

Joint ci ratio: 1.896839e-01	ci left: 1.733208e-04	ci right 2.100605e-04	k: 426	n:2230000
Cons ci ratio: 3.045709e-02	ci left: 7.261227e-03	ci right 7.486243e-03	k: 16442	n:2230000
KS ci ratio: 1.912584e-01	ci left: 1.703315e-04	ci right 2.067720e-04	k: 419	n:2230000
HS6ST1   2230000 perm   2268 sec   (983 perm/sec)   p_kst 1.878924e-04   p_cons 7.373094e-03   p_joint 1.910314e-04

Joint ci ratio: 1.896840e-01	ci left: 1.725471e-04	ci right 2.091227e-04	k: 426	n:2240000
Cons ci ratio: 3.037489e-02	ci left: 7.268241e-03	ci right 7.492857e-03	k: 16531	n:2240000
KS ci ratio: 1.910311e-01	ci left: 1.699961e-04	ci right 2.063167e-04	k: 420	n:2240000
HS6ST1   2240000 perm   2286 sec   (980 perm/sec)   p_kst 1.875000e-04   p_cons 7.379911e-03   p_joint 1.901786e-04

Joint ci ratio: 1.894623e-01	ci left: 1.722035e-04	ci right 2.086588e-04	k: 427	n:2250000
Cons ci ratio: 3.031081e-02	ci left: 7.266813e-03	ci right 7.490902e-03	k: 16601	n:2250000
KS ci ratio: 1.908047e-01	ci left: 1.696638e-04	ci right 2.058654e-04	k: 421	n:2250000
HS6ST1   2250000 perm   2305 sec   (976 perm/sec)   p_kst 1.871111e-04   p_cons 7.378222e-03   p_joint 1.897778e-04

Joint ci ratio: 1.890212e-01	ci left: 1.722846e-04	ci right 2.086624e-04	k: 429	n:2260000
Cons ci ratio: 3.023983e-02	ci left: 7.268911e-03	ci right 7.492531e-03	k: 16679	n:2260000
KS ci ratio: 1.903541e-01	ci left: 1.697558e-04	ci right 2.058816e-04	k: 423	n:2260000
HS6ST1   2260000 perm   2323 sec   (973 perm/sec)   p_kst 1.871681e-04   p_cons 7.380088e-03   p_joint 1.898230e-04

Joint ci ratio: 1.885831e-01	ci left: 1.723651e-04	ci right 2.086658e-04	k: 431	n:2270000
Cons ci ratio: 3.016119e-02	ci left: 7.274926e-03	ci right 7.498139e-03	k: 16766	n:2270000
KS ci ratio: 1.899068e-01	ci left: 1.698471e-04	ci right 2.058976e-04	k: 425	n:2270000
HS6ST1   2270000 perm   2341 sec   (969 perm/sec)   p_kst 1.872247e-04   p_cons 7.385903e-03   p_joint 1.898678e-04

Joint ci ratio: 1.883652e-01	ci left: 1.720270e-04	ci right 2.082099e-04	k: 432	n:2280000
Cons ci ratio: 3.009845e-02	ci left: 7.273489e-03	ci right 7.496186e-03	k: 16836	n:2280000
KS ci ratio: 1.896843e-01	ci left: 1.695199e-04	ci right 2.054539e-04	k: 426	n:2280000
HS6ST1   2280000 perm   2360 sec   (966 perm/sec)   p_kst 1.868421e-04   p_cons 7.384211e-03   p_joint 1.894737e-04

Joint ci ratio: 1.879317e-01	ci left: 1.721080e-04	ci right 2.082151e-04	k: 434	n:2290000
Cons ci ratio: 3.003252e-02	ci left: 7.273799e-03	ci right 7.496009e-03	k: 16910	n:2290000
KS ci ratio: 1.894626e-01	ci left: 1.691956e-04	ci right 2.050141e-04	k: 427	n:2290000
HS6ST1   2290000 perm   2378 sec   (963 perm/sec)   p_kst 1.864629e-04   p_cons 7.384279e-03   p_joint 1.895197e-04

Joint ci ratio: 1.872870e-01	ci left: 1.726028e-04	ci right 2.086754e-04	k: 437	n:2300000
Cons ci ratio: 2.996792e-02	ci left: 7.273675e-03	ci right 7.495394e-03	k: 16983	n:2300000
KS ci ratio: 1.888020e-01	ci left: 1.697026e-04	ci right 2.054888e-04	k: 430	n:2300000
HS6ST1   2300000 perm   2397 sec   (960 perm/sec)   p_kst 1.869565e-04   p_cons 7.383913e-03   p_joint 1.900000e-04

Joint ci ratio: 1.899071e-01	ci left: 1.669060e-04	ci right 2.023323e-04	k: 425	n:2310000
Cons ci ratio: 2.991344e-02	ci left: 7.268826e-03	ci right 7.489988e-03	k: 17045	n:2310000
KS ci ratio: 1.879319e-01	ci left: 1.706179e-04	ci right 2.064124e-04	k: 434	n:2310000
HS6ST1   2310000 perm   2416 sec   (956 perm/sec)   p_kst 1.878788e-04   p_cons 7.378788e-03   p_joint 1.839827e-04

Joint ci ratio: 1.892418e-01	ci left: 1.674183e-04	ci right 2.028146e-04	k: 428	n:2320000
Cons ci ratio: 2.985399e-02	ci left: 7.266586e-03	ci right 7.487233e-03	k: 17113	n:2320000
KS ci ratio: 1.875013e-01	ci left: 1.707040e-04	ci right 2.064252e-04	k: 436	n:2320000
HS6ST1   2320000 perm   2435 sec   (953 perm/sec)   p_kst 1.879310e-04   p_cons 7.376293e-03   p_joint 1.844828e-04

Joint ci ratio: 1.890217e-01	ci left: 1.671086e-04	ci right 2.023936e-04	k: 429	n:2330000
Cons ci ratio: 2.979140e-02	ci left: 7.266069e-03	ci right 7.486231e-03	k: 17185	n:2330000
KS ci ratio: 1.872872e-01	ci left: 1.703804e-04	ci right 2.059886e-04	k: 437	n:2330000
HS6ST1   2330000 perm   2454 sec   (949 perm/sec)   p_kst 1.875536e-04   p_cons 7.375536e-03   p_joint 1.841202e-04

Joint ci ratio: 1.885836e-01	ci left: 1.672088e-04	ci right 2.024237e-04	k: 431	n:2340000
Cons ci ratio: 2.973007e-02	ci left: 7.265134e-03	ci right 7.484806e-03	k: 17256	n:2340000
KS ci ratio: 1.868611e-01	ci left: 1.704670e-04	ci right 2.060030e-04	k: 439	n:2340000
HS6ST1   2340000 perm   2473 sec   (946 perm/sec)   p_kst 1.876068e-04   p_cons 7.374359e-03   p_joint 1.841880e-04

Joint ci ratio: 1.883658e-01	ci left: 1.669027e-04	ci right 2.020079e-04	k: 432	n:2350000
Cons ci ratio: 2.966740e-02	ci left: 7.265052e-03	ci right 7.484250e-03	k: 17329	n:2350000
KS ci ratio: 1.864378e-01	ci left: 1.705529e-04	ci right 2.060171e-04	k: 441	n:2350000
HS6ST1   2350000 perm   2492 sec   (943 perm/sec)   p_kst 1.876596e-04   p_cons 7.374043e-03   p_joint 1.838298e-04

Joint ci ratio: 2.026823e-01	ci left: 1.424175e-04	ci right 1.749316e-04	k: 373	n:2360000
Cons ci ratio: 2.961368e-02	ci left: 7.260764e-03	ci right 7.479430e-03	k: 17392	n:2360000
KS ci ratio: 1.860174e-01	ci left: 1.706382e-04	ci right 2.060311e-04	k: 443	n:2360000
HS6ST1   2360000 perm   2511 sec   (940 perm/sec)   p_kst 1.877119e-04   p_cons 7.369492e-03   p_joint 1.580508e-04

Joint ci ratio: 2.024119e-01	ci left: 1.422171e-04	ci right 1.746368e-04	k: 374	n:2370000
Cons ci ratio: 2.954152e-02	ci left: 7.265728e-03	ci right 7.484001e-03	k: 17477	n:2370000
KS ci ratio: 1.858083e-01	ci left: 1.703205e-04	ci right 2.056033e-04	k: 444	n:2370000
HS6ST1   2370000 perm   2531 sec   (936 perm/sec)   p_kst 1.873418e-04   p_cons 7.374262e-03   p_joint 1.578059e-04

Joint ci ratio: 2.024119e-01	ci left: 1.416195e-04	ci right 1.739030e-04	k: 374	n:2380000
Cons ci ratio: 2.947664e-02	ci left: 7.267314e-03	ci right 7.485147e-03	k: 17554	n:2380000
KS ci ratio: 1.858084e-01	ci left: 1.696048e-04	ci right 2.047395e-04	k: 444	n:2380000
HS6ST1   2380000 perm   2550 sec   (933 perm/sec)   p_kst 1.865546e-04   p_cons 7.375630e-03   p_joint 1.571429e-04

Joint ci ratio: 2.024120e-01	ci left: 1.410270e-04	ci right 1.731754e-04	k: 374	n:2390000
Cons ci ratio: 2.942395e-02	ci left: 7.263073e-03	ci right 7.480383e-03	k: 17617	n:2390000
KS ci ratio: 1.858085e-01	ci left: 1.688952e-04	ci right 2.038828e-04	k: 444	n:2390000
HS6ST1   2390000 perm   2569 sec   (930 perm/sec)   p_kst 1.857741e-04   p_cons 7.371130e-03   p_joint 1.564854e-04

Joint ci ratio: 2.018744e-01	ci left: 1.412305e-04	ci right 1.733293e-04	k: 376	n:2400000
Cons ci ratio: 2.935817e-02	ci left: 7.265485e-03	ci right 7.482373e-03	k: 17696	n:2400000
KS ci ratio: 1.851853e-01	ci left: 1.693834e-04	ci right 2.043413e-04	k: 447	n:2400000
HS6ST1   2400000 perm   2588 sec   (927 perm/sec)   p_kst 1.862500e-04   p_cons 7.373333e-03   p_joint 1.566667e-04

Joint ci ratio: 2.018744e-01	ci left: 1.406445e-04	ci right 1.726101e-04	k: 376	n:2410000
Cons ci ratio: 2.928536e-02	ci left: 7.271585e-03	ci right 7.488108e-03	k: 17784	n:2410000
KS ci ratio: 1.849790e-01	ci left: 1.690763e-04	ci right 2.039275e-04	k: 448	n:2410000
HS6ST1   2410000 perm   2608 sec   (924 perm/sec)   p_kst 1.858921e-04   p_cons 7.379253e-03   p_joint 1.560166e-04

Joint ci ratio: 2.016073e-01	ci left: 1.404557e-04	ci right 1.723309e-04	k: 377	n:2420000
Cons ci ratio: 2.923452e-02	ci left: 7.266969e-03	ci right 7.482973e-03	k: 17846	n:2420000
KS ci ratio: 1.847734e-01	ci left: 1.687717e-04	ci right 2.035172e-04	k: 449	n:2420000
HS6ST1   2420000 perm   2627 sec   (921 perm/sec)   p_kst 1.855372e-04   p_cons 7.374380e-03   p_joint 1.557851e-04

Joint ci ratio: 2.005488e-01	ci left: 1.414409e-04	ci right 1.733505e-04	k: 381	n:2430000
Cons ci ratio: 2.917984e-02	ci left: 7.264434e-03	ci right 7.479952e-03	k: 17913	n:2430000
KS ci ratio: 1.839575e-01	ci left: 1.696473e-04	ci right 2.044016e-04	k: 453	n:2430000
HS6ST1   2430000 perm   2647 sec   (918 perm/sec)   p_kst 1.864198e-04   p_cons 7.371605e-03   p_joint 1.567901e-04

Joint ci ratio: 2.002869e-01	ci left: 1.412505e-04	ci right 1.730705e-04	k: 382	n:2440000
Cons ci ratio: 2.912139e-02	ci left: 7.263955e-03	ci right 7.479020e-03	k: 17985	n:2440000
KS ci ratio: 1.837553e-01	ci left: 1.693430e-04	ci right 2.039926e-04	k: 454	n:2440000
HS6ST1   2440000 perm   2667 sec   (915 perm/sec)   p_kst 1.860656e-04   p_cons 7.370902e-03   p_joint 1.565574e-04

Joint ci ratio: 2.002869e-01	ci left: 1.406740e-04	ci right 1.723641e-04	k: 382	n:2450000
Cons ci ratio: 2.905518e-02	ci left: 7.267533e-03	ci right 7.482206e-03	k: 18067	n:2450000
KS ci ratio: 1.835537e-01	ci left: 1.690412e-04	ci right 2.035869e-04	k: 455	n:2450000
HS6ST1   2450000 perm   2687 sec   (912 perm/sec)   p_kst 1.857143e-04   p_cons 7.374286e-03   p_joint 1.559184e-04

Joint ci ratio: 2.002870e-01	ci left: 1.401021e-04	ci right 1.716634e-04	k: 382	n:2460000
Cons ci ratio: 2.900150e-02	ci left: 7.265028e-03	ci right 7.479224e-03	k: 18134	n:2460000
KS ci ratio: 1.835538e-01	ci left: 1.683540e-04	ci right 2.027593e-04	k: 455	n:2460000
HS6ST1   2460000 perm   2708 sec   (909 perm/sec)   p_kst 1.849593e-04   p_cons 7.371545e-03   p_joint 1.552846e-04

Joint ci ratio: 2.002871e-01	ci left: 1.395349e-04	ci right 1.709684e-04	k: 382	n:2470000
Cons ci ratio: 2.894331e-02	ci left: 7.264955e-03	ci right 7.478712e-03	k: 18207	n:2470000
KS ci ratio: 1.831526e-01	ci left: 1.684450e-04	ci right 2.027853e-04	k: 457	n:2470000
HS6ST1   2470000 perm   2728 sec   (905 perm/sec)   p_kst 1.850202e-04   p_cons 7.371255e-03   p_joint 1.546559e-04

Joint ci ratio: 2.000261e-01	ci left: 1.393553e-04	ci right 1.707024e-04	k: 383	n:2480000
Cons ci ratio: 2.888467e-02	ci left: 7.265284e-03	ci right 7.478611e-03	k: 18281	n:2480000
KS ci ratio: 1.829530e-01	ci left: 1.681505e-04	ci right 2.023893e-04	k: 458	n:2480000
HS6ST1   2480000 perm   2748 sec   (903 perm/sec)   p_kst 1.846774e-04   p_cons 7.371371e-03   p_joint 1.544355e-04

Joint ci ratio: 1.997662e-01	ci left: 1.391771e-04	ci right 1.704386e-04	k: 384	n:2490000
Cons ci ratio: 2.883430e-02	ci left: 7.261623e-03	ci right 7.474465e-03	k: 18345	n:2490000
KS ci ratio: 1.827540e-01	ci left: 1.678585e-04	ci right 2.019964e-04	k: 459	n:2490000
HS6ST1   2490000 perm   2768 sec   (900 perm/sec)   p_kst 1.843373e-04   p_cons 7.367470e-03   p_joint 1.542169e-04

Joint ci ratio: 1.992493e-01	ci left: 1.393804e-04	ci right 1.705967e-04	k: 386	n:2500000
Cons ci ratio: 2.878183e-02	ci left: 7.259184e-03	ci right 7.471560e-03	k: 18412	n:2500000
KS ci ratio: 1.825557e-01	ci left: 1.675687e-04	ci right 2.016067e-04	k: 460	n:2500000
HS6ST1   2500000 perm   2788 sec   (897 perm/sec)   p_kst 1.840000e-04   p_cons 7.364800e-03   p_joint 1.544000e-04

Joint ci ratio: 1.984815e-01	ci left: 1.399608e-04	ci right 1.711717e-04	k: 389	n:2510000
Cons ci ratio: 2.873748e-02	ci left: 7.252808e-03	ci right 7.464665e-03	k: 18469	n:2510000
KS ci ratio: 1.819646e-01	ci left: 1.680418e-04	ci right 2.020532e-04	k: 463	n:2510000
HS6ST1   2510000 perm   2808 sec   (894 perm/sec)   p_kst 1.844622e-04   p_cons 7.358167e-03   p_joint 1.549801e-04

Joint ci ratio: 1.982275e-01	ci left: 1.397826e-04	ci right 1.709090e-04	k: 390	n:2520000
Cons ci ratio: 2.868009e-02	ci left: 7.253182e-03	ci right 7.464620e-03	k: 18543	n:2520000
KS ci ratio: 1.817688e-01	ci left: 1.677537e-04	ci right 2.016663e-04	k: 464	n:2520000
HS6ST1   2520000 perm   2828 sec   (891 perm/sec)   p_kst 1.841270e-04   p_cons 7.358333e-03   p_joint 1.547619e-04

Joint ci ratio: 1.979745e-01	ci left: 1.396057e-04	ci right 1.706483e-04	k: 391	n:2530000
Cons ci ratio: 2.862768e-02	ci left: 7.251198e-03	ci right 7.462185e-03	k: 18611	n:2530000
KS ci ratio: 1.815737e-01	ci left: 1.674680e-04	ci right 2.012824e-04	k: 465	n:2530000
HS6ST1   2530000 perm   2849 sec   (888 perm/sec)   p_kst 1.837945e-04   p_cons 7.356126e-03   p_joint 1.545455e-04

Joint ci ratio: 1.974714e-01	ci left: 1.398045e-04	ci right 1.708028e-04	k: 393	n:2540000
Cons ci ratio: 2.856631e-02	ci left: 7.253921e-03	ci right 7.464528e-03	k: 18691	n:2540000
KS ci ratio: 1.811853e-01	ci left: 1.675603e-04	ci right 2.013130e-04	k: 467	n:2540000
HS6ST1   2540000 perm   2869 sec   (885 perm/sec)   p_kst 1.838583e-04   p_cons 7.358661e-03   p_joint 1.547244e-04

Joint ci ratio: 1.972213e-01	ci left: 1.396290e-04	ci right 1.705445e-04	k: 394	n:2550000
Cons ci ratio: 2.851912e-02	ci left: 7.249614e-03	ci right 7.459743e-03	k: 18753	n:2550000
KS ci ratio: 1.809921e-01	ci left: 1.672776e-04	ci right 2.009335e-04	k: 468	n:2550000
HS6ST1   2550000 perm   2890 sec   (882 perm/sec)   p_kst 1.835294e-04   p_cons 7.354118e-03   p_joint 1.545098e-04

Joint ci ratio: 1.967239e-01	ci left: 1.398263e-04	ci right 1.706980e-04	k: 396	n:2560000
Cons ci ratio: 2.845921e-02	ci left: 7.251935e-03	ci right 7.461682e-03	k: 18832	n:2560000
KS ci ratio: 1.804160e-01	ci left: 1.677430e-04	ci right 2.013734e-04	k: 471	n:2560000
HS6ST1   2560000 perm   2911 sec   (880 perm/sec)   p_kst 1.839844e-04   p_cons 7.356250e-03   p_joint 1.546875e-04

Joint ci ratio: 1.962302e-01	ci left: 1.400222e-04	ci right 1.708502e-04	k: 398	n:2570000
Cons ci ratio: 2.840800e-02	ci left: 7.249988e-03	ci right 7.459295e-03	k: 18900	n:2570000
KS ci ratio: 1.800349e-01	ci left: 1.678334e-04	ci right 2.014031e-04	k: 473	n:2570000
HS6ST1   2570000 perm   2932 sec   (877 perm/sec)   p_kst 1.840467e-04   p_cons 7.354086e-03   p_joint 1.548638e-04

Joint ci ratio: 1.957402e-01	ci left: 1.402166e-04	ci right 1.710012e-04	k: 400	n:2580000
Cons ci ratio: 2.834954e-02	ci left: 7.251906e-03	ci right 7.460830e-03	k: 18978	n:2580000
KS ci ratio: 1.796563e-01	ci left: 1.679232e-04	ci right 2.014326e-04	k: 475	n:2580000
HS6ST1   2580000 perm   2953 sec   (874 perm/sec)   p_kst 1.841085e-04   p_cons 7.355814e-03   p_joint 1.550388e-04

Joint ci ratio: 1.957403e-01	ci left: 1.396753e-04	ci right 1.703410e-04	k: 400	n:2590000
Cons ci ratio: 2.829069e-02	ci left: 7.254192e-03	ci right 7.462742e-03	k: 19057	n:2590000
KS ci ratio: 1.796564e-01	ci left: 1.672749e-04	ci right 2.006548e-04	k: 475	n:2590000
HS6ST1   2590000 perm   2974 sec   (871 perm/sec)   p_kst 1.833977e-04   p_cons 7.357915e-03   p_joint 1.544402e-04

Joint ci ratio: 1.972216e-01	ci left: 1.369438e-04	ci right 1.672648e-04	k: 394	n:2600000
Cons ci ratio: 2.823890e-02	ci left: 7.253024e-03	ci right 7.461152e-03	k: 19127	n:2600000
KS ci ratio: 1.790928e-01	ci left: 1.677335e-04	ci right 2.010887e-04	k: 478	n:2600000
HS6ST1   2600000 perm   2995 sec   (868 perm/sec)   p_kst 1.838462e-04   p_cons 7.356538e-03   p_joint 1.515385e-04

Joint ci ratio: 1.806077e-01	ci left: 1.641637e-04	ci right 1.971153e-04	k: 470	n:2610000
Cons ci ratio: 2.818295e-02	ci left: 7.254148e-03	ci right 7.461890e-03	k: 19203	n:2610000
KS ci ratio: 1.787201e-01	ci left: 1.678228e-04	ci right 2.011188e-04	k: 480	n:2610000
HS6ST1   2610000 perm   3016 sec   (865 perm/sec)   p_kst 1.839080e-04   p_cons 7.357471e-03   p_joint 1.800766e-04

Joint ci ratio: 1.802255e-01	ci left: 1.642660e-04	ci right 1.971607e-04	k: 472	n:2620000
Cons ci ratio: 2.812587e-02	ci left: 7.256022e-03	ci right 7.463390e-03	k: 19281	n:2620000
KS ci ratio: 1.783497e-01	ci left: 1.679116e-04	ci right 2.011486e-04	k: 482	n:2620000
HS6ST1   2620000 perm   3037 sec   (863 perm/sec)   p_kst 1.839695e-04   p_cons 7.359160e-03   p_joint 1.801527e-04

Joint ci ratio: 1.800353e-01	ci left: 1.640045e-04	ci right 1.968084e-04	k: 473	n:2630000
Cons ci ratio: 2.807497e-02	ci left: 7.254861e-03	ci right 7.461815e-03	k: 19351	n:2630000
KS ci ratio: 1.779816e-01	ci left: 1.679996e-04	ci right 2.011781e-04	k: 484	n:2630000
HS6ST1   2630000 perm   3059 sec   (860 perm/sec)   p_kst 1.840304e-04   p_cons 7.357795e-03   p_joint 1.798479e-04

Joint ci ratio: 1.796567e-01	ci left: 1.641067e-04	ci right 1.968546e-04	k: 475	n:2640000
Cons ci ratio: 2.801636e-02	ci left: 7.257848e-03	ci right 7.464447e-03	k: 19432	n:2640000
KS ci ratio: 1.776157e-01	ci left: 1.680871e-04	ci right 2.012073e-04	k: 486	n:2640000
HS6ST1   2640000 perm   3080 sec   (857 perm/sec)   p_kst 1.840909e-04   p_cons 7.360606e-03   p_joint 1.799242e-04

Joint ci ratio: 1.790931e-01	ci left: 1.645687e-04	ci right 1.972946e-04	k: 478	n:2650000
Cons ci ratio: 2.795234e-02	ci left: 7.263810e-03	ci right 7.470099e-03	k: 19521	n:2650000
KS ci ratio: 1.768907e-01	ci left: 1.688953e-04	ci right 2.020244e-04	k: 490	n:2650000
HS6ST1   2650000 perm   3100 sec   (855 perm/sec)   p_kst 1.849057e-04   p_cons 7.366415e-03   p_joint 1.803774e-04

Joint ci ratio: 1.787204e-01	ci left: 1.646683e-04	ci right 1.973384e-04	k: 480	n:2660000
Cons ci ratio: 2.788805e-02	ci left: 7.270101e-03	ci right 7.476086e-03	k: 19611	n:2660000
KS ci ratio: 1.765315e-01	ci left: 1.689790e-04	ci right 2.020500e-04	k: 492	n:2660000
HS6ST1   2660000 perm   3121 sec   (852 perm/sec)   p_kst 1.849624e-04   p_cons 7.372556e-03   p_joint 1.804511e-04

Joint ci ratio: 1.787205e-01	ci left: 1.640515e-04	ci right 1.965993e-04	k: 480	n:2670000
Cons ci ratio: 2.783344e-02	ci left: 7.271510e-03	ci right 7.477126e-03	k: 19688	n:2670000
KS ci ratio: 1.765316e-01	ci left: 1.683461e-04	ci right 2.012932e-04	k: 492	n:2670000
HS6ST1   2670000 perm   3142 sec   (850 perm/sec)   p_kst 1.842697e-04   p_cons 7.373783e-03   p_joint 1.797753e-04

Joint ci ratio: 1.802259e-01	ci left: 1.605884e-04	ci right 1.927467e-04	k: 472	n:2680000
Cons ci ratio: 2.778766e-02	ci left: 7.268463e-03	ci right 7.473649e-03	k: 19753	n:2680000
KS ci ratio: 1.758197e-01	ci left: 1.691447e-04	ci right 2.021004e-04	k: 496	n:2680000
HS6ST1   2680000 perm   3163 sec   (847 perm/sec)   p_kst 1.850746e-04   p_cons 7.370522e-03   p_joint 1.761194e-04

Joint ci ratio: 1.802259e-01	ci left: 1.599914e-04	ci right 1.920302e-04	k: 472	n:2690000
Cons ci ratio: 2.773646e-02	ci left: 7.268392e-03	ci right 7.473191e-03	k: 19826	n:2690000
KS ci ratio: 1.756431e-01	ci left: 1.688713e-04	ci right 2.017372e-04	k: 497	n:2690000
HS6ST1   2690000 perm   3185 sec   (845 perm/sec)   p_kst 1.847584e-04   p_cons 7.370260e-03   p_joint 1.754647e-04

Joint ci ratio: 1.800357e-01	ci left: 1.597525e-04	ci right 1.917060e-04	k: 473	n:2700000
Cons ci ratio: 2.768975e-02	ci left: 7.266114e-03	ci right 7.470500e-03	k: 19893	n:2700000
KS ci ratio: 1.752915e-01	ci left: 1.689541e-04	ci right 2.017633e-04	k: 499	n:2700000
HS6ST1   2700000 perm   3206 sec   (842 perm/sec)   p_kst 1.848148e-04   p_cons 7.367778e-03   p_joint 1.751852e-04

Joint ci ratio: 1.800358e-01	ci left: 1.591630e-04	ci right 1.909986e-04	k: 473	n:2710000
Cons ci ratio: 2.762655e-02	ci left: 7.272650e-03	ci right 7.476745e-03	k: 19984	n:2710000
KS ci ratio: 1.752915e-01	ci left: 1.683306e-04	ci right 2.010188e-04	k: 499	n:2710000
HS6ST1   2710000 perm   3228 sec   (839 perm/sec)   p_kst 1.841328e-04   p_cons 7.374170e-03   p_joint 1.745387e-04

Joint ci ratio: 1.798462e-01	ci left: 1.589289e-04	ci right 1.906806e-04	k: 474	n:2720000
Cons ci ratio: 2.757900e-02	ci left: 7.271105e-03	ci right 7.474799e-03	k: 20053	n:2720000
KS ci ratio: 1.751165e-01	ci left: 1.680633e-04	ci right 2.006635e-04	k: 500	n:2720000
HS6ST1   2720000 perm   3250 sec   (837 perm/sec)   p_kst 1.838235e-04   p_cons 7.372426e-03   p_joint 1.742647e-04

Joint ci ratio: 1.796572e-01	ci left: 1.586966e-04	ci right 1.903649e-04	k: 475	n:2730000
Cons ci ratio: 2.752688e-02	ci left: 7.272118e-03	ci right 7.475450e-03	k: 20129	n:2730000
KS ci ratio: 1.749420e-01	ci left: 1.677979e-04	ci right 2.003108e-04	k: 501	n:2730000
HS6ST1   2730000 perm   3271 sec   (835 perm/sec)   p_kst 1.835165e-04   p_cons 7.373260e-03   p_joint 1.739927e-04

Joint ci ratio: 1.811866e-01	ci left: 1.553295e-04	ci right 1.866188e-04	k: 467	n:2740000
Cons ci ratio: 2.747916e-02	ci left: 7.270949e-03	ci right 7.473890e-03	k: 20199	n:2740000
KS ci ratio: 1.745946e-01	ci left: 1.678835e-04	ci right 2.003415e-04	k: 503	n:2740000
HS6ST1   2740000 perm   3293 sec   (832 perm/sec)   p_kst 1.835766e-04   p_cons 7.371898e-03   p_joint 1.704380e-04

Joint ci ratio: 1.806086e-01	ci left: 1.558062e-04	ci right 1.870804e-04	k: 470	n:2750000
Cons ci ratio: 2.742215e-02	ci left: 7.274845e-03	ci right 7.477467e-03	k: 20283	n:2750000
KS ci ratio: 1.740772e-01	ci left: 1.683163e-04	ci right 2.007515e-04	k: 506	n:2750000
HS6ST1   2750000 perm   3315 sec   (830 perm/sec)   p_kst 1.840000e-04   p_cons 7.375636e-03   p_joint 1.709091e-04

Joint ci ratio: 1.798464e-01	ci left: 1.566256e-04	ci right 1.879172e-04	k: 474	n:2760000
Cons ci ratio: 2.738108e-02	ci left: 7.270437e-03	ci right 7.472628e-03	k: 20344	n:2760000
KS ci ratio: 1.735644e-01	ci left: 1.687462e-04	ci right 2.011583e-04	k: 509	n:2760000
HS6ST1   2760000 perm   3337 sec   (827 perm/sec)   p_kst 1.844203e-04   p_cons 7.371014e-03   p_joint 1.717391e-04

Joint ci ratio: 1.796574e-01	ci left: 1.564049e-04	ci right 1.876160e-04	k: 475	n:2770000
Cons ci ratio: 2.733411e-02	ci left: 7.269287e-03	ci right 7.471095e-03	k: 20414	n:2770000
KS ci ratio: 1.733946e-01	ci left: 1.684823e-04	ci right 2.008088e-04	k: 510	n:2770000
HS6ST1   2770000 perm   3360 sec   (824 perm/sec)   p_kst 1.841155e-04   p_cons 7.369675e-03   p_joint 1.714801e-04

Joint ci ratio: 1.794690e-01	ci left: 1.561859e-04	ci right 1.873170e-04	k: 476	n:2780000
Cons ci ratio: 2.729007e-02	ci left: 7.266718e-03	ci right 7.468124e-03	k: 20480	n:2780000
KS ci ratio: 1.730562e-01	ci left: 1.685645e-04	ci right 2.008370e-04	k: 512	n:2780000
HS6ST1   2780000 perm   3382 sec   (822 perm/sec)   p_kst 1.841727e-04   p_cons 7.366906e-03   p_joint 1.712230e-04

Joint ci ratio: 1.789073e-01	ci left: 1.566531e-04	ci right 1.877690e-04	k: 479	n:2790000
Cons ci ratio: 2.724625e-02	ci left: 7.264167e-03	ci right 7.465173e-03	k: 20546	n:2790000
KS ci ratio: 1.727199e-01	ci left: 1.686461e-04	ci right 2.008650e-04	k: 514	n:2790000
HS6ST1   2790000 perm   3404 sec   (820 perm/sec)   p_kst 1.842294e-04   p_cons 7.364158e-03   p_joint 1.716846e-04

Joint ci ratio: 1.785357e-01	ci left: 1.567760e-04	ci right 1.878446e-04	k: 481	n:2800000
Cons ci ratio: 2.718802e-02	ci left: 7.269438e-03	ci right 7.470154e-03	k: 20634	n:2800000
KS ci ratio: 1.725524e-01	ci left: 1.683855e-04	ci right 2.005202e-04	k: 515	n:2800000
HS6ST1   2800000 perm   3426 sec   (817 perm/sec)   p_kst 1.839286e-04   p_cons 7.369286e-03   p_joint 1.717857e-04

Joint ci ratio: 1.781664e-01	ci left: 1.568980e-04	ci right 1.879196e-04	k: 483	n:2810000
Cons ci ratio: 2.713808e-02	ci left: 7.270431e-03	ci right 7.470800e-03	k: 20710	n:2810000
KS ci ratio: 1.718874e-01	ci left: 1.691484e-04	ci right 2.012914e-04	k: 519	n:2810000
HS6ST1   2810000 perm   3449 sec   (815 perm/sec)   p_kst 1.846975e-04   p_cons 7.370107e-03   p_joint 1.718861e-04

Joint ci ratio: 1.774347e-01	ci left: 1.576970e-04	ci right 1.887347e-04	k: 487	n:2820000
Cons ci ratio: 2.708841e-02	ci left: 7.271417e-03	ci right 7.471441e-03	k: 20786	n:2820000
KS ci ratio: 1.712301e-01	ci left: 1.699062e-04	ci right 2.020569e-04	k: 523	n:2820000
HS6ST1   2820000 perm   3472 sec   (812 perm/sec)   p_kst 1.854610e-04   p_cons 7.370922e-03   p_joint 1.726950e-04

Joint ci ratio: 1.768917e-01	ci left: 1.581528e-04	ci right 1.891749e-04	k: 490	n:2830000
Cons ci ratio: 2.703901e-02	ci left: 7.272396e-03	ci right 7.472077e-03	k: 20862	n:2830000
KS ci ratio: 1.707420e-01	ci left: 1.703205e-04	ci right 2.024483e-04	k: 526	n:2830000
HS6ST1   2830000 perm   3495 sec   (810 perm/sec)   p_kst 1.858657e-04   p_cons 7.371731e-03   p_joint 1.731449e-04

Joint ci ratio: 1.763538e-01	ci left: 1.586056e-04	ci right 1.896117e-04	k: 493	n:2840000
Cons ci ratio: 2.699184e-02	ci left: 7.272320e-03	ci right 7.471644e-03	k: 20935	n:2840000
KS ci ratio: 1.702580e-01	ci left: 1.707320e-04	ci right 2.028368e-04	k: 529	n:2840000
HS6ST1   2840000 perm   3517 sec   (807 perm/sec)   p_kst 1.862676e-04   p_cons 7.371479e-03   p_joint 1.735915e-04

Joint ci ratio: 1.759978e-01	ci left: 1.587199e-04	ci right 1.896791e-04	k: 495	n:2850000
Cons ci ratio: 2.695395e-02	ci left: 7.267365e-03	ci right 7.466270e-03	k: 20994	n:2850000
KS ci ratio: 1.697781e-01	ci left: 1.711408e-04	ci right 2.032225e-04	k: 532	n:2850000
HS6ST1   2850000 perm   3540 sec   (805 perm/sec)   p_kst 1.866667e-04   p_cons 7.366316e-03   p_joint 1.736842e-04

Joint ci ratio: 1.756441e-01	ci left: 1.588334e-04	ci right 1.897459e-04	k: 497	n:2860000
Cons ci ratio: 2.690529e-02	ci left: 7.268349e-03	ci right 7.466916e-03	k: 21070	n:2860000
KS ci ratio: 1.694605e-01	ci left: 1.712121e-04	ci right 2.032409e-04	k: 534	n:2860000
HS6ST1   2860000 perm   3562 sec   (803 perm/sec)   p_kst 1.867133e-04   p_cons 7.367133e-03   p_joint 1.737762e-04

Joint ci ratio: 1.756441e-01	ci left: 1.582800e-04	ci right 1.890848e-04	k: 497	n:2870000
Cons ci ratio: 2.685561e-02	ci left: 7.270019e-03	ci right 7.468259e-03	k: 21148	n:2870000
KS ci ratio: 1.694606e-01	ci left: 1.706155e-04	ci right 2.025327e-04	k: 534	n:2870000
HS6ST1   2870000 perm   3585 sec   (801 perm/sec)   p_kst 1.860627e-04   p_cons 7.368641e-03   p_joint 1.731707e-04

Joint ci ratio: 1.754681e-01	ci left: 1.580624e-04	ci right 1.887907e-04	k: 498	n:2880000
Cons ci ratio: 2.680938e-02	ci left: 7.269953e-03	ci right 7.467845e-03	k: 21221	n:2880000
KS ci ratio: 1.693024e-01	ci left: 1.703556e-04	ci right 2.021914e-04	k: 535	n:2880000
HS6ST1   2880000 perm   3608 sec   (798 perm/sec)   p_kst 1.857639e-04   p_cons 7.368403e-03   p_joint 1.729167e-04

Joint ci ratio: 1.749429e-01	ci left: 1.585080e-04	ci right 1.892210e-04	k: 501	n:2890000
Cons ci ratio: 2.676593e-02	ci left: 7.268513e-03	ci right 7.466040e-03	k: 21290	n:2890000
KS ci ratio: 1.689874e-01	ci left: 1.704289e-04	ci right 2.022131e-04	k: 537	n:2890000
HS6ST1   2890000 perm   3630 sec   (796 perm/sec)   p_kst 1.858131e-04   p_cons 7.366782e-03   p_joint 1.733564e-04

Joint ci ratio: 1.745955e-01	ci left: 1.586209e-04	ci right 1.892883e-04	k: 503	n:2900000
Cons ci ratio: 2.672520e-02	ci left: 7.265713e-03	ci right 7.462859e-03	k: 21355	n:2900000
KS ci ratio: 1.686742e-01	ci left: 1.705017e-04	ci right 2.022346e-04	k: 539	n:2900000
HS6ST1   2900000 perm   3653 sec   (794 perm/sec)   p_kst 1.858621e-04   p_cons 7.363793e-03   p_joint 1.734483e-04

Joint ci ratio: 1.739067e-01	ci left: 1.593904e-04	ci right 1.900723e-04	k: 507	n:2910000
Cons ci ratio: 2.666586e-02	ci left: 7.273173e-03	ci right 7.470077e-03	k: 21450	n:2910000
KS ci ratio: 1.680529e-01	ci left: 1.712324e-04	ci right 2.029720e-04	k: 543	n:2910000
HS6ST1   2910000 perm   3676 sec   (792 perm/sec)   p_kst 1.865979e-04   p_cons 7.371134e-03   p_joint 1.742268e-04

Joint ci ratio: 1.735653e-01	ci left: 1.594997e-04	ci right 1.901360e-04	k: 509	n:2920000
Cons ci ratio: 2.662996e-02	ci left: 7.267996e-03	ci right 7.464490e-03	k: 21508	n:2920000
KS ci ratio: 1.677448e-01	ci left: 1.713022e-04	ci right 2.029906e-04	k: 545	n:2920000
HS6ST1   2920000 perm   3699 sec   (789 perm/sec)   p_kst 1.866438e-04   p_cons 7.365753e-03   p_joint 1.743151e-04

Joint ci ratio: 1.733954e-01	ci left: 1.592818e-04	ci right 1.898432e-04	k: 510	n:2930000
Cons ci ratio: 2.658302e-02	ci left: 7.268956e-03	ci right 7.465125e-03	k: 21584	n:2930000
KS ci ratio: 1.675914e-01	ci left: 1.710445e-04	ci right 2.026534e-04	k: 546	n:2930000
HS6ST1   2930000 perm   3723 sec   (787 perm/sec)   p_kst 1.863481e-04   p_cons 7.366553e-03   p_joint 1.740614e-04

Joint ci ratio: 1.728886e-01	ci left: 1.597163e-04	ci right 1.902621e-04	k: 513	n:2940000
Cons ci ratio: 2.654560e-02	ci left: 7.264842e-03	ci right 7.460620e-03	k: 21645	n:2940000
KS ci ratio: 1.669819e-01	ci left: 1.717663e-04	ci right 2.033816e-04	k: 550	n:2940000
HS6ST1   2940000 perm   3747 sec   (785 perm/sec)   p_kst 1.870748e-04   p_cons 7.362245e-03   p_joint 1.744898e-04

Joint ci ratio: 1.722198e-01	ci left: 1.604722e-04	ci right 1.910315e-04	k: 517	n:2950000
Cons ci ratio: 2.650525e-02	ci left: 7.262440e-03	ci right 7.457851e-03	k: 21711	n:2950000
KS ci ratio: 1.663791e-01	ci left: 1.724834e-04	ci right 2.041046e-04	k: 554	n:2950000
HS6ST1   2950000 perm   3771 sec   (782 perm/sec)   p_kst 1.877966e-04   p_cons 7.359661e-03   p_joint 1.752542e-04

Joint ci ratio: 1.718882e-01	ci left: 1.605767e-04	ci right 1.910909e-04	k: 519	n:2960000
Cons ci ratio: 2.645836e-02	ci left: 7.263746e-03	ci right 7.458841e-03	k: 21788	n:2960000
KS ci ratio: 1.660801e-01	ci left: 1.725483e-04	ci right 2.041188e-04	k: 556	n:2960000
HS6ST1   2960000 perm   3794 sec   (780 perm/sec)   p_kst 1.878378e-04   p_cons 7.360811e-03   p_joint 1.753378e-04

Joint ci ratio: 1.710677e-01	ci left: 1.616473e-04	ci right 1.922032e-04	k: 524	n:2970000
Cons ci ratio: 2.640929e-02	ci left: 7.266382e-03	ci right 7.461180e-03	k: 21869	n:2970000
KS ci ratio: 1.653395e-01	ci left: 1.735810e-04	ci right 2.051848e-04	k: 561	n:2970000
HS6ST1   2970000 perm   3817 sec   (778 perm/sec)   p_kst 1.888889e-04   p_cons 7.363300e-03   p_joint 1.764310e-04

Joint ci ratio: 1.710677e-01	ci left: 1.611048e-04	ci right 1.915582e-04	k: 524	n:2980000
Cons ci ratio: 2.636533e-02	ci left: 7.266333e-03	ci right 7.460801e-03	k: 21942	n:2980000
KS ci ratio: 1.653396e-01	ci left: 1.729985e-04	ci right 2.044962e-04	k: 561	n:2980000
HS6ST1   2980000 perm   3841 sec   (776 perm/sec)   p_kst 1.882550e-04   p_cons 7.363087e-03   p_joint 1.758389e-04

Joint ci ratio: 1.707428e-01	ci left: 1.612063e-04	ci right 1.916150e-04	k: 526	n:2990000
Cons ci ratio: 2.632098e-02	ci left: 7.266617e-03	ci right 7.460760e-03	k: 22016	n:2990000
KS ci ratio: 1.650462e-01	ci left: 1.730612e-04	ci right 2.045088e-04	k: 563	n:2990000
HS6ST1   2990000 perm   3864 sec   (774 perm/sec)   p_kst 1.882943e-04   p_cons 7.363211e-03   p_joint 1.759197e-04

Joint ci ratio: 1.705811e-01	ci left: 1.609880e-04	ci right 1.913239e-04	k: 527	n:3000000
Cons ci ratio: 2.628585e-02	ci left: 7.261932e-03	ci right 7.455687e-03	k: 22075	n:3000000
KS ci ratio: 1.649001e-01	ci left: 1.728039e-04	ci right 2.041742e-04	k: 564	n:3000000
HS6ST1   3000000 perm   3888 sec   (772 perm/sec)   p_kst 1.880000e-04   p_cons 7.358333e-03   p_joint 1.756667e-04

Joint ci ratio: 1.705811e-01	ci left: 1.604532e-04	ci right 1.906882e-04	k: 527	n:3010000
Cons ci ratio: 2.624130e-02	ci left: 7.262559e-03	ci right 7.455998e-03	k: 22150	n:3010000
KS ci ratio: 1.647544e-01	ci left: 1.725483e-04	ci right 2.038418e-04	k: 565	n:3010000
HS6ST1   3010000 perm   3912 sec   (769 perm/sec)   p_kst 1.877076e-04   p_cons 7.358804e-03   p_joint 1.750831e-04

Joint ci ratio: 1.702589e-01	ci left: 1.605559e-04	ci right 1.907473e-04	k: 529	n:3020000
Cons ci ratio: 2.620471e-02	ci left: 7.258906e-03	ci right 7.451974e-03	k: 22212	n:3020000
KS ci ratio: 1.644641e-01	ci left: 1.726119e-04	ci right 2.038564e-04	k: 567	n:3020000
HS6ST1   3020000 perm   3936 sec   (767 perm/sec)   p_kst 1.877483e-04   p_cons 7.354967e-03   p_joint 1.751656e-04

Joint ci ratio: 1.697791e-01	ci left: 1.609740e-04	ci right 1.911500e-04	k: 532	n:3030000
Cons ci ratio: 2.616649e-02	ci left: 7.256261e-03	ci right 7.448973e-03	k: 22277	n:3030000
KS ci ratio: 1.641753e-01	ci left: 1.726751e-04	ci right 2.038707e-04	k: 569	n:3030000
HS6ST1   3030000 perm   3960 sec   (765 perm/sec)   p_kst 1.877888e-04   p_cons 7.352145e-03   p_joint 1.755776e-04

Joint ci ratio: 1.693033e-01	ci left: 1.613894e-04	ci right 1.915498e-04	k: 535	n:3040000
Cons ci ratio: 2.612608e-02	ci left: 7.254941e-03	ci right 7.447315e-03	k: 22346	n:3040000
KS ci ratio: 1.637449e-01	ci left: 1.730535e-04	ci right 2.042274e-04	k: 572	n:3040000
HS6ST1   3040000 perm   3984 sec   (763 perm/sec)   p_kst 1.881579e-04   p_cons 7.350658e-03   p_joint 1.759868e-04

Joint ci ratio: 1.688314e-01	ci left: 1.618023e-04	ci right 1.919470e-04	k: 538	n:3050000
Cons ci ratio: 2.607531e-02	ci left: 7.259493e-03	ci right 7.451609e-03	k: 22433	n:3050000
KS ci ratio: 1.633179e-01	ci left: 1.734295e-04	ci right 2.045816e-04	k: 575	n:3050000
HS6ST1   3050000 perm   4009 sec   (761 perm/sec)   p_kst 1.885246e-04   p_cons 7.355082e-03   p_joint 1.763934e-04

Joint ci ratio: 1.686750e-01	ci left: 1.615865e-04	ci right 1.916603e-04	k: 539	n:3060000
Cons ci ratio: 2.603707e-02	ci left: 7.257197e-03	ci right 7.448966e-03	k: 22499	n:3060000
KS ci ratio: 1.631763e-01	ci left: 1.731761e-04	ci right 2.042532e-04	k: 576	n:3060000
HS6ST1   3060000 perm   4033 sec   (759 perm/sec)   p_kst 1.882353e-04   p_cons 7.352614e-03   p_joint 1.761438e-04

Joint ci ratio: 1.685191e-01	ci left: 1.613721e-04	ci right 1.913755e-04	k: 540	n:3070000
Cons ci ratio: 2.600829e-02	ci left: 7.249738e-03	ci right 7.441095e-03	k: 22549	n:3070000
KS ci ratio: 1.630351e-01	ci left: 1.729245e-04	ci right 2.039269e-04	k: 577	n:3070000
HS6ST1   3070000 perm   4058 sec   (757 perm/sec)   p_kst 1.879479e-04   p_cons 7.344951e-03   p_joint 1.758958e-04

Joint ci ratio: 1.678995e-01	ci left: 1.620922e-04	ci right 1.921074e-04	k: 544	n:3080000
Cons ci ratio: 2.597208e-02	ci left: 7.246521e-03	ci right 7.437524e-03	k: 22612	n:3080000
KS ci ratio: 1.623344e-01	ci left: 1.739203e-04	ci right 2.049542e-04	k: 582	n:3080000
HS6ST1   3080000 perm   4082 sec   (754 perm/sec)   p_kst 1.889610e-04   p_cons 7.341558e-03   p_joint 1.766234e-04

Joint ci ratio: 1.675922e-01	ci left: 1.621878e-04	ci right 1.921601e-04	k: 546	n:3090000
Cons ci ratio: 2.593199e-02	ci left: 7.245576e-03	ci right 7.436255e-03	k: 22682	n:3090000
KS ci ratio: 1.621954e-01	ci left: 1.736680e-04	ci right 2.046277e-04	k: 583	n:3090000
HS6ST1   3090000 perm   4106 sec   (753 perm/sec)   p_kst 1.886731e-04   p_cons 7.340453e-03   p_joint 1.766990e-04

Joint ci ratio: 1.674393e-01	ci left: 1.619736e-04	ci right 1.918763e-04	k: 547	n:3100000
Cons ci ratio: 2.588979e-02	ci left: 7.245920e-03	ci right 7.436292e-03	k: 22756	n:3100000
KS ci ratio: 1.619184e-01	ci left: 1.737267e-04	ci right 2.046389e-04	k: 585	n:3100000
HS6ST1   3100000 perm   4130 sec   (751 perm/sec)   p_kst 1.887097e-04   p_cons 7.340645e-03   p_joint 1.764516e-04

Joint ci ratio: 1.668314e-01	ci left: 1.626852e-04	ci right 1.925993e-04	k: 551	n:3110000
Cons ci ratio: 2.585807e-02	ci left: 7.240511e-03	ci right 7.430505e-03	k: 22812	n:3110000
KS ci ratio: 1.612319e-01	ci left: 1.747108e-04	ci right 2.056536e-04	k: 590	n:3110000
HS6ST1   3110000 perm   4155 sec   (749 perm/sec)   p_kst 1.897106e-04   p_cons 7.335048e-03   p_joint 1.771704e-04

Joint ci ratio: 1.665300e-01	ci left: 1.627780e-04	ci right 1.926497e-04	k: 553	n:3120000
Cons ci ratio: 2.581396e-02	ci left: 7.242143e-03	ci right 7.431850e-03	k: 22890	n:3120000
KS ci ratio: 1.609598e-01	ci left: 1.747661e-04	ci right 2.056613e-04	k: 592	n:3120000
HS6ST1   3120000 perm   4179 sec   (747 perm/sec)   p_kst 1.897436e-04   p_cons 7.336538e-03   p_joint 1.772436e-04

Joint ci ratio: 1.662302e-01	ci left: 1.628704e-04	ci right 1.926998e-04	k: 555	n:3130000
Cons ci ratio: 2.577063e-02	ci left: 7.243447e-03	ci right 7.432866e-03	k: 22967	n:3130000
KS ci ratio: 1.606890e-01	ci left: 1.748210e-04	ci right 2.056689e-04	k: 594	n:3130000
HS6ST1   3130000 perm   4204 sec   (745 perm/sec)   p_kst 1.897764e-04   p_cons 7.337700e-03   p_joint 1.773163e-04

Joint ci ratio: 1.660810e-01	ci left: 1.626569e-04	ci right 1.924178e-04	k: 556	n:3140000
Cons ci ratio: 2.573709e-02	ci left: 7.239364e-03	ci right 7.428426e-03	k: 23027	n:3140000
KS ci ratio: 1.605542e-01	ci left: 1.745699e-04	ci right 2.053451e-04	k: 595	n:3140000
HS6ST1   3140000 perm   4229 sec   (742 perm/sec)   p_kst 1.894904e-04   p_cons 7.333439e-03   p_joint 1.770701e-04

Joint ci ratio: 1.659321e-01	ci left: 1.624448e-04	ci right 1.921376e-04	k: 557	n:3150000
Cons ci ratio: 2.569920e-02	ci left: 7.237830e-03	ci right 7.426569e-03	k: 23095	n:3150000
KS ci ratio: 1.605542e-01	ci left: 1.740157e-04	ci right 2.046932e-04	k: 595	n:3150000
HS6ST1   3150000 perm   4255 sec   (740 perm/sec)   p_kst 1.888889e-04   p_cons 7.331746e-03   p_joint 1.768254e-04

Joint ci ratio: 1.657836e-01	ci left: 1.622340e-04	ci right 1.918591e-04	k: 558	n:3160000
Cons ci ratio: 2.566259e-02	ci left: 7.235677e-03	ci right 7.424088e-03	k: 23161	n:3160000
KS ci ratio: 1.604197e-01	ci left: 1.737687e-04	ci right 2.043746e-04	k: 596	n:3160000
HS6ST1   3160000 perm   4280 sec   (738 perm/sec)   p_kst 1.886076e-04   p_cons 7.329430e-03   p_joint 1.765823e-04

Joint ci ratio: 1.654879e-01	ci left: 1.623270e-04	ci right 1.919110e-04	k: 560	n:3170000
Cons ci ratio: 2.562169e-02	ci left: 7.236046e-03	ci right 7.424162e-03	k: 23235	n:3170000
KS ci ratio: 1.602856e-01	ci left: 1.735234e-04	ci right 2.040580e-04	k: 597	n:3170000
HS6ST1   3170000 perm   4306 sec   (736 perm/sec)   p_kst 1.883281e-04   p_cons 7.329653e-03   p_joint 1.766562e-04

Joint ci ratio: 1.653406e-01	ci left: 1.621180e-04	ci right 1.916349e-04	k: 561	n:3180000
Cons ci ratio: 2.557822e-02	ci left: 7.237975e-03	ci right 7.425817e-03	k: 23314	n:3180000
KS ci ratio: 1.601517e-01	ci left: 1.732796e-04	ci right 2.037434e-04	k: 598	n:3180000
HS6ST1   3180000 perm   4331 sec   (734 perm/sec)   p_kst 1.880503e-04   p_cons 7.331447e-03   p_joint 1.764151e-04

Joint ci ratio: 1.653406e-01	ci left: 1.616098e-04	ci right 1.910342e-04	k: 561	n:3190000
Cons ci ratio: 2.553113e-02	ci left: 7.242073e-03	ci right 7.429670e-03	k: 23400	n:3190000
KS ci ratio: 1.601518e-01	ci left: 1.727364e-04	ci right 2.031047e-04	k: 598	n:3190000
HS6ST1   3190000 perm   4356 sec   (732 perm/sec)   p_kst 1.874608e-04   p_cons 7.335423e-03   p_joint 1.758621e-04

Joint ci ratio: 1.650472e-01	ci left: 1.617039e-04	ci right 1.910880e-04	k: 563	n:3200000
Cons ci ratio: 2.550289e-02	ci left: 7.235587e-03	ci right 7.422806e-03	k: 23452	n:3200000
KS ci ratio: 1.598851e-01	ci left: 1.727965e-04	ci right 2.031200e-04	k: 600	n:3200000
HS6ST1   3200000 perm   4382 sec   (730 perm/sec)   p_kst 1.875000e-04   p_cons 7.328750e-03   p_joint 1.759375e-04

Joint ci ratio: 1.649011e-01	ci left: 1.614988e-04	ci right 1.908171e-04	k: 564	n:3210000
Cons ci ratio: 2.545894e-02	ci left: 7.238120e-03	ci right 7.425076e-03	k: 23533	n:3210000
KS ci ratio: 1.598851e-01	ci left: 1.722582e-04	ci right 2.024873e-04	k: 600	n:3210000
HS6ST1   3210000 perm   4408 sec   (728 perm/sec)   p_kst 1.869159e-04   p_cons 7.331153e-03   p_joint 1.757009e-04

Joint ci ratio: 1.641762e-01	ci left: 1.624862e-04	ci right 1.918412e-04	k: 569	n:3220000
Cons ci ratio: 2.541954e-02	ci left: 7.238168e-03	ci right 7.424832e-03	k: 23606	n:3220000
KS ci ratio: 1.592241e-01	ci left: 1.732141e-04	ci right 2.034731e-04	k: 605	n:3220000
HS6ST1   3220000 perm   4433 sec   (726 perm/sec)   p_kst 1.878882e-04   p_cons 7.331056e-03   p_joint 1.767081e-04

Joint ci ratio: 1.671351e-01	ci left: 1.560478e-04	ci right 1.847989e-04	k: 549	n:3230000
Cons ci ratio: 2.538411e-02	ci left: 7.236062e-03	ci right 7.422408e-03	k: 23672	n:3230000
KS ci ratio: 1.587011e-01	ci left: 1.738669e-04	ci right 2.041308e-04	k: 609	n:3230000
HS6ST1   3230000 perm   4459 sec   (724 perm/sec)   p_kst 1.885449e-04   p_cons 7.328793e-03   p_joint 1.699690e-04

Joint ci ratio: 1.546947e-01	ci left: 1.828197e-04	ci right 2.137641e-04	k: 641	n:3240000
Cons ci ratio: 2.533325e-02	ci left: 7.242864e-03	ci right 7.429006e-03	k: 23767	n:3240000
KS ci ratio: 1.636031e-01	ci left: 1.626671e-04	ci right 1.919421e-04	k: 573	n:3240000
HS6ST1   3240000 perm   4485 sec   (722 perm/sec)   p_kst 1.768519e-04   p_cons 7.335494e-03   p_joint 1.978395e-04

Joint ci ratio: 1.544543e-01	ci left: 1.828488e-04	ci right 2.137456e-04	k: 643	n:3250000
Cons ci ratio: 2.529230e-02	ci left: 7.244120e-03	ci right 7.429990e-03	k: 23844	n:3250000
KS ci ratio: 1.633188e-01	ci left: 1.627568e-04	ci right 1.919921e-04	k: 575	n:3250000
HS6ST1   3250000 perm   4512 sec   (720 perm/sec)   p_kst 1.769231e-04   p_cons 7.336615e-03   p_joint 1.978462e-04

Joint ci ratio: 1.536215e-01	ci left: 1.843524e-04	ci right 2.153198e-04	k: 650	n:3260000
Cons ci ratio: 2.524836e-02	ci left: 7.247199e-03	ci right 7.432819e-03	k: 23927	n:3260000
KS ci ratio: 1.627546e-01	ci left: 1.634345e-04	ci right 1.926802e-04	k: 579	n:3260000
HS6ST1   3260000 perm   4538 sec   (718 perm/sec)   p_kst 1.776074e-04   p_cons 7.339571e-03   p_joint 1.993865e-04

Joint ci ratio: 1.532688e-01	ci left: 1.846708e-04	ci right 2.156140e-04	k: 653	n:3270000
Cons ci ratio: 2.520940e-02	ci left: 7.247523e-03	ci right 7.432862e-03	k: 24001	n:3270000
KS ci ratio: 1.623353e-01	ci left: 1.638148e-04	ci right 1.930456e-04	k: 582	n:3270000
HS6ST1   3270000 perm   4564 sec   (717 perm/sec)   p_kst 1.779817e-04   p_cons 7.339755e-03   p_joint 1.996942e-04

Joint ci ratio: 1.531518e-01	ci left: 1.844010e-04	ci right 2.152732e-04	k: 654	n:3280000
Cons ci ratio: 2.517273e-02	ci left: 7.246634e-03	ci right 7.431676e-03	k: 24071	n:3280000
KS ci ratio: 1.621963e-01	ci left: 1.636079e-04	ci right 1.927743e-04	k: 583	n:3280000
HS6ST1   3280000 perm   4590 sec   (715 perm/sec)   p_kst 1.777439e-04   p_cons 7.338720e-03   p_joint 1.993902e-04

Joint ci ratio: 1.529185e-01	ci left: 1.844251e-04	ci right 2.152500e-04	k: 656	n:3290000
Cons ci ratio: 2.513465e-02	ci left: 7.246657e-03	ci right 7.431416e-03	k: 24144	n:3290000
KS ci ratio: 1.620576e-01	ci left: 1.634022e-04	ci right 1.925047e-04	k: 584	n:3290000
HS6ST1   3290000 perm   4615 sec   (713 perm/sec)   p_kst 1.775076e-04   p_cons 7.338602e-03   p_joint 1.993921e-04

Joint ci ratio: 1.821650e-01	ci left: 1.275242e-04	ci right 1.533664e-04	k: 462	n:3300000
Cons ci ratio: 2.509100e-02	ci left: 7.249992e-03	ci right 7.434510e-03	k: 24228	n:3300000
KS ci ratio: 1.615063e-01	ci left: 1.640701e-04	ci right 1.931825e-04	k: 588	n:3300000
HS6ST1   3300000 perm   4642 sec   (711 perm/sec)   p_kst 1.781818e-04   p_cons 7.341818e-03   p_joint 1.400000e-04

Joint ci ratio: 1.819686e-01	ci left: 1.274272e-04	ci right 1.532189e-04	k: 463	n:3310000
Cons ci ratio: 2.505174e-02	ci left: 7.250906e-03	ci right 7.435154e-03	k: 24304	n:3310000
KS ci ratio: 1.613694e-01	ci left: 1.638643e-04	ci right 1.929132e-04	k: 589	n:3310000
HS6ST1   3310000 perm   4668 sec   (709 perm/sec)   p_kst 1.779456e-04   p_cons 7.342598e-03   p_joint 1.398792e-04

Joint ci ratio: 1.815777e-01	ci left: 1.276184e-04	ci right 1.533872e-04	k: 465	n:3320000
Cons ci ratio: 2.501834e-02	ci left: 7.248521e-03	ci right 7.432460e-03	k: 24369	n:3320000
KS ci ratio: 1.609607e-01	ci left: 1.642379e-04	ci right 1.932721e-04	k: 592	n:3320000
HS6ST1   3320000 perm   4694 sec   (707 perm/sec)   p_kst 1.783133e-04   p_cons 7.340060e-03   p_joint 1.400602e-04

Joint ci ratio: 1.813832e-01	ci left: 1.275218e-04	ci right 1.532405e-04	k: 466	n:3330000
Cons ci ratio: 2.498249e-02	ci left: 7.247643e-03	ci right 7.431293e-03	k: 24439	n:3330000
KS ci ratio: 1.608252e-01	ci left: 1.640329e-04	ci right 1.930041e-04	k: 593	n:3330000
HS6ST1   3330000 perm   4720 sec   (705 perm/sec)   p_kst 1.780781e-04   p_cons 7.339039e-03   p_joint 1.399399e-04

Joint ci ratio: 1.806113e-01	ci left: 1.282834e-04	ci right 1.540335e-04	k: 470	n:3340000
Cons ci ratio: 2.493963e-02	ci left: 7.250937e-03	ci right 7.434350e-03	k: 24523	n:3340000
KS ci ratio: 1.602863e-01	ci left: 1.646913e-04	ci right 1.936719e-04	k: 597	n:3340000
HS6ST1   3340000 perm   4746 sec   (704 perm/sec)   p_kst 1.787425e-04   p_cons 7.342216e-03   p_joint 1.407186e-04

Joint ci ratio: 1.804199e-01	ci left: 1.281855e-04	ci right 1.538857e-04	k: 471	n:3350000
Cons ci ratio: 2.490362e-02	ci left: 7.250354e-03	ci right 7.433484e-03	k: 24594	n:3350000
KS ci ratio: 1.602864e-01	ci left: 1.641997e-04	ci right 1.930938e-04	k: 597	n:3350000
HS6ST1   3350000 perm   4773 sec   (702 perm/sec)   p_kst 1.782090e-04   p_cons 7.341493e-03   p_joint 1.405970e-04

Joint ci ratio: 1.798492e-01	ci left: 1.286566e-04	ci right 1.543607e-04	k: 474	n:3360000
Cons ci ratio: 2.486624e-02	ci left: 7.250663e-03	ci right 7.433521e-03	k: 24668	n:3360000
KS ci ratio: 1.601526e-01	ci left: 1.639967e-04	ci right 1.928287e-04	k: 598	n:3360000
HS6ST1   3360000 perm   4800 sec   (700 perm/sec)   p_kst 1.779762e-04   p_cons 7.341667e-03   p_joint 1.410714e-04

Joint ci ratio: 1.796602e-01	ci left: 1.285582e-04	ci right 1.542128e-04	k: 475	n:3370000
Cons ci ratio: 2.482953e-02	ci left: 7.250674e-03	ci right 7.433260e-03	k: 24741	n:3370000
KS ci ratio: 1.601526e-01	ci left: 1.635100e-04	ci right 1.922565e-04	k: 598	n:3370000
HS6ST1   3370000 perm   4827 sec   (698 perm/sec)   p_kst 1.774481e-04   p_cons 7.341543e-03   p_joint 1.409496e-04

Joint ci ratio: 1.794718e-01	ci left: 1.284604e-04	ci right 1.540657e-04	k: 476	n:3380000
Cons ci ratio: 2.478745e-02	ci left: 7.253921e-03	ci right 7.436274e-03	k: 24825	n:3380000
KS ci ratio: 1.600191e-01	ci left: 1.633103e-04	ci right 1.919954e-04	k: 599	n:3380000
HS6ST1   3380000 perm   4854 sec   (696 perm/sec)   p_kst 1.772189e-04   p_cons 7.344675e-03   p_joint 1.408284e-04

Joint ci ratio: 1.794718e-01	ci left: 1.280815e-04	ci right 1.536112e-04	k: 476	n:3390000
Cons ci ratio: 2.475359e-02	ci left: 7.252458e-03	ci right 7.434521e-03	k: 24893	n:3390000
KS ci ratio: 1.600191e-01	ci left: 1.628285e-04	ci right 1.914290e-04	k: 599	n:3390000
HS6ST1   3390000 perm   4881 sec   (695 perm/sec)   p_kst 1.766962e-04   p_cons 7.343068e-03   p_joint 1.404130e-04

Joint ci ratio: 1.790967e-01	ci left: 1.282666e-04	ci right 1.537740e-04	k: 478	n:3400000
Cons ci ratio: 2.471339e-02	ci left: 7.254803e-03	ci right 7.436626e-03	k: 24974	n:3400000
KS ci ratio: 1.597531e-01	ci left: 1.629143e-04	ci right 1.914777e-04	k: 601	n:3400000
HS6ST1   3400000 perm   4907 sec   (693 perm/sec)   p_kst 1.767647e-04   p_cons 7.345294e-03   p_joint 1.405882e-04

Joint ci ratio: 1.783535e-01	ci left: 1.290110e-04	ci right 1.545485e-04	k: 482	n:3410000
Cons ci ratio: 2.467239e-02	ci left: 7.257718e-03	ci right 7.439308e-03	k: 25057	n:3410000
KS ci ratio: 1.593565e-01	ci left: 1.632812e-04	ci right 1.918311e-04	k: 604	n:3410000
HS6ST1   3410000 perm   4933 sec   (691 perm/sec)   p_kst 1.771261e-04   p_cons 7.348094e-03   p_joint 1.413490e-04

Joint ci ratio: 1.781692e-01	ci left: 1.289131e-04	ci right 1.544020e-04	k: 483	n:3420000
Cons ci ratio: 2.463801e-02	ci left: 7.256838e-03	ci right 7.438149e-03	k: 25127	n:3420000
KS ci ratio: 1.592250e-01	ci left: 1.630845e-04	ci right 1.915742e-04	k: 605	n:3420000
HS6ST1   3420000 perm   4960 sec   (690 perm/sec)   p_kst 1.769006e-04   p_cons 7.347076e-03   p_joint 1.412281e-04

Joint ci ratio: 1.778022e-01	ci left: 1.290944e-04	ci right 1.545609e-04	k: 485	n:3430000
Cons ci ratio: 2.460329e-02	ci left: 7.256254e-03	ci right 7.437291e-03	k: 25198	n:3430000
KS ci ratio: 1.587020e-01	ci left: 1.637289e-04	ci right 1.922282e-04	k: 609	n:3430000
HS6ST1   3430000 perm   4986 sec   (688 perm/sec)   p_kst 1.775510e-04   p_cons 7.346356e-03   p_joint 1.413994e-04

Joint ci ratio: 1.772559e-01	ci left: 1.295525e-04	ci right 1.550224e-04	k: 488	n:3440000
Cons ci ratio: 2.457165e-02	ci left: 7.253939e-03	ci right 7.434683e-03	k: 25263	n:3440000
KS ci ratio: 1.583132e-01	ci left: 1.640904e-04	ci right 1.925761e-04	k: 612	n:3440000
HS6ST1   3440000 perm   5013 sec   (686 perm/sec)   p_kst 1.779070e-04   p_cons 7.343895e-03   p_joint 1.418605e-04

Joint ci ratio: 1.770749e-01	ci left: 1.294539e-04	ci right 1.548758e-04	k: 489	n:3450000
Cons ci ratio: 2.453330e-02	ci left: 7.255671e-03	ci right 7.436172e-03	k: 25342	n:3450000
KS ci ratio: 1.580555e-01	ci left: 1.641715e-04	ci right 1.926205e-04	k: 614	n:3450000
HS6ST1   3450000 perm   5041 sec   (684 perm/sec)   p_kst 1.779710e-04   p_cons 7.345507e-03   p_joint 1.417391e-04

Joint ci ratio: 1.770750e-01	ci left: 1.290798e-04	ci right 1.544282e-04	k: 489	n:3460000
Cons ci ratio: 2.450096e-02	ci left: 7.253946e-03	ci right 7.434163e-03	k: 25409	n:3460000
KS ci ratio: 1.580556e-01	ci left: 1.636971e-04	ci right 1.920638e-04	k: 614	n:3460000
HS6ST1   3460000 perm   5068 sec   (683 perm/sec)   p_kst 1.774566e-04   p_cons 7.343642e-03   p_joint 1.413295e-04

Joint ci ratio: 1.768946e-01	ci left: 1.289832e-04	ci right 1.542841e-04	k: 490	n:3470000
Cons ci ratio: 2.446681e-02	ci left: 7.253377e-03	ci right 7.433325e-03	k: 25480	n:3470000
KS ci ratio: 1.577992e-01	ci left: 1.637789e-04	ci right 1.921094e-04	k: 616	n:3470000
HS6ST1   3470000 perm   5097 sec   (681 perm/sec)   p_kst 1.775216e-04   p_cons 7.342939e-03   p_joint 1.412104e-04

Joint ci ratio: 1.767147e-01	ci left: 1.288872e-04	ci right 1.541408e-04	k: 491	n:3480000
Cons ci ratio: 2.443473e-02	ci left: 7.251669e-03	ci right 7.431336e-03	k: 25547	n:3480000
KS ci ratio: 1.576715e-01	ci left: 1.635843e-04	ci right 1.918561e-04	k: 617	n:3480000
HS6ST1   3480000 perm   5124 sec   (679 perm/sec)   p_kst 1.772989e-04   p_cons 7.341092e-03   p_joint 1.410920e-04

Joint ci ratio: 1.765354e-01	ci left: 1.287918e-04	ci right 1.539983e-04	k: 492	n:3490000
Cons ci ratio: 2.439510e-02	ci left: 7.254528e-03	ci right 7.433970e-03	k: 25630	n:3490000
KS ci ratio: 1.576715e-01	ci left: 1.631156e-04	ci right 1.913064e-04	k: 617	n:3490000
HS6ST1   3490000 perm   5151 sec   (678 perm/sec)   p_kst 1.767908e-04   p_cons 7.343840e-03   p_joint 1.409742e-04

Joint ci ratio: 1.765355e-01	ci left: 1.284238e-04	ci right 1.535583e-04	k: 492	n:3500000
Cons ci ratio: 2.436903e-02	ci left: 7.249419e-03	ci right 7.428540e-03	k: 25685	n:3500000
KS ci ratio: 1.575441e-01	ci left: 1.629240e-04	ci right 1.910568e-04	k: 618	n:3500000
HS6ST1   3500000 perm   5178 sec   (676 perm/sec)   p_kst 1.765714e-04   p_cons 7.338571e-03   p_joint 1.405714e-04

Joint ci ratio: 1.761784e-01	ci left: 1.286026e-04	ci right 1.537157e-04	k: 494	n:3510000
Cons ci ratio: 2.433495e-02	ci left: 7.249154e-03	ci right 7.428014e-03	k: 25757	n:3510000
KS ci ratio: 1.572902e-01	ci left: 1.630071e-04	ci right 1.911047e-04	k: 620	n:3510000
HS6ST1   3510000 perm   5205 sec   (674 perm/sec)   p_kst 1.766382e-04   p_cons 7.338177e-03   p_joint 1.407407e-04

Joint ci ratio: 1.758236e-01	ci left: 1.287804e-04	ci right 1.538722e-04	k: 496	n:3520000
Cons ci ratio: 2.430244e-02	ci left: 7.248042e-03	ci right 7.426633e-03	k: 25826	n:3520000
KS ci ratio: 1.570376e-01	ci left: 1.630899e-04	ci right 1.911523e-04	k: 622	n:3520000
HS6ST1   3520000 perm   5233 sec   (673 perm/sec)   p_kst 1.767045e-04   p_cons 7.336932e-03   p_joint 1.409091e-04

Joint ci ratio: 1.756470e-01	ci left: 1.286864e-04	ci right 1.537321e-04	k: 497	n:3530000
Cons ci ratio: 2.427147e-02	ci left: 7.246093e-03	ci right 7.424405e-03	k: 25892	n:3530000
KS ci ratio: 1.567861e-01	ci left: 1.631722e-04	ci right 1.911995e-04	k: 624	n:3530000
HS6ST1   3530000 perm   5261 sec   (671 perm/sec)   p_kst 1.767705e-04   p_cons 7.334844e-03   p_joint 1.407932e-04

Joint ci ratio: 1.815785e-01	ci left: 1.196873e-04	ci right 1.438547e-04	k: 465	n:3540000
Cons ci ratio: 2.423780e-02	ci left: 7.245839e-03	ci right 7.423894e-03	k: 25964	n:3540000
KS ci ratio: 1.566608e-01	ci left: 1.629827e-04	ci right 1.909530e-04	k: 625	n:3540000
HS6ST1   3540000 perm   5290 sec   (669 perm/sec)   p_kst 1.765537e-04   p_cons 7.334463e-03   p_joint 1.313559e-04

Joint ci ratio: 1.813840e-01	ci left: 1.196190e-04	ci right 1.437440e-04	k: 466	n:3550000
Cons ci ratio: 2.419538e-02	ci left: 7.250907e-03	ci right 7.428771e-03	k: 26055	n:3550000
KS ci ratio: 1.565359e-01	ci left: 1.627942e-04	ci right 1.907078e-04	k: 626	n:3550000
HS6ST1   3550000 perm   5319 sec   (667 perm/sec)   p_kst 1.763380e-04   p_cons 7.339437e-03   p_joint 1.312676e-04

Joint ci ratio: 1.813840e-01	ci left: 1.192830e-04	ci right 1.433402e-04	k: 466	n:3560000
Cons ci ratio: 2.416668e-02	ci left: 7.247850e-03	ci right 7.425425e-03	k: 26117	n:3560000
KS ci ratio: 1.565359e-01	ci left: 1.623369e-04	ci right 1.901721e-04	k: 626	n:3560000
HS6ST1   3560000 perm   5347 sec   (666 perm/sec)   p_kst 1.758427e-04   p_cons 7.336236e-03   p_joint 1.308989e-04

Joint ci ratio: 1.813841e-01	ci left: 1.189489e-04	ci right 1.429387e-04	k: 466	n:3570000
Cons ci ratio: 2.413298e-02	ci left: 7.247873e-03	ci right 7.425197e-03	k: 26190	n:3570000
KS ci ratio: 1.565360e-01	ci left: 1.618822e-04	ci right 1.896394e-04	k: 626	n:3570000
HS6ST1   3570000 perm   5375 sec   (664 perm/sec)   p_kst 1.753501e-04   p_cons 7.336134e-03   p_joint 1.305322e-04

Joint ci ratio: 1.813841e-01	ci left: 1.186166e-04	ci right 1.425394e-04	k: 466	n:3580000
Cons ci ratio: 2.410035e-02	ci left: 7.247340e-03	ci right 7.424408e-03	k: 26261	n:3580000
KS ci ratio: 1.562869e-01	ci left: 1.619668e-04	ci right 1.896902e-04	k: 628	n:3580000
HS6ST1   3580000 perm   5405 sec   (662 perm/sec)   p_kst 1.754190e-04   p_cons 7.335475e-03   p_joint 1.301676e-04

Joint ci ratio: 1.808043e-01	ci left: 1.190840e-04	ci right 1.430159e-04	k: 469	n:3590000
Cons ci ratio: 2.406508e-02	ci left: 7.248472e-03	ci right 7.425305e-03	k: 26338	n:3590000
KS ci ratio: 1.559155e-01	ci left: 1.623187e-04	ci right 1.900301e-04	k: 631	n:3590000
HS6ST1   3590000 perm   5434 sec   (661 perm/sec)   p_kst 1.757660e-04   p_cons 7.336490e-03   p_joint 1.306407e-04

Joint ci ratio: 1.808043e-01	ci left: 1.187532e-04	ci right 1.426186e-04	k: 469	n:3600000
Cons ci ratio: 2.402997e-02	ci left: 7.249598e-03	ci right 7.426196e-03	k: 26415	n:3600000
KS ci ratio: 1.554244e-01	ci left: 1.629356e-04	ci right 1.906566e-04	k: 635	n:3600000
HS6ST1   3600000 perm   5462 sec   (659 perm/sec)   p_kst 1.763889e-04   p_cons 7.337500e-03   p_joint 1.302778e-04

Joint ci ratio: 1.804208e-01	ci left: 1.189532e-04	ci right 1.428026e-04	k: 471	n:3610000
Cons ci ratio: 2.399045e-02	ci left: 7.253471e-03	ci right 7.429869e-03	k: 26502	n:3610000
KS ci ratio: 1.551806e-01	ci left: 1.630168e-04	ci right 1.907040e-04	k: 637	n:3610000
HS6ST1   3610000 perm   5491 sec   (657 perm/sec)   p_kst 1.764543e-04   p_cons 7.341274e-03   p_joint 1.304709e-04

Joint ci ratio: 1.804208e-01	ci left: 1.186246e-04	ci right 1.424081e-04	k: 471	n:3620000
Cons ci ratio: 2.395657e-02	ci left: 7.254028e-03	ci right 7.430187e-03	k: 26577	n:3620000
KS ci ratio: 1.549379e-01	ci left: 1.630975e-04	ci right 1.907511e-04	k: 639	n:3620000
HS6ST1   3620000 perm   5519 sec   (656 perm/sec)   p_kst 1.765193e-04   p_cons 7.341713e-03   p_joint 1.301105e-04

Joint ci ratio: 1.804209e-01	ci left: 1.182978e-04	ci right 1.420158e-04	k: 471	n:3630000
Cons ci ratio: 2.393053e-02	ci left: 7.249926e-03	ci right 7.425792e-03	k: 26635	n:3630000
KS ci ratio: 1.545760e-01	ci left: 1.634426e-04	ci right 1.910840e-04	k: 642	n:3630000
HS6ST1   3630000 perm   5549 sec   (654 perm/sec)   p_kst 1.768595e-04   p_cons 7.337466e-03   p_joint 1.297521e-04

Joint ci ratio: 1.804209e-01	ci left: 1.179728e-04	ci right 1.416256e-04	k: 471	n:3640000
Cons ci ratio: 2.389150e-02	ci left: 7.253767e-03	ci right 7.429435e-03	k: 26722	n:3640000
KS ci ratio: 1.544560e-01	ci left: 1.632577e-04	ci right 1.908444e-04	k: 643	n:3640000
HS6ST1   3640000 perm   5578 sec   (653 perm/sec)   p_kst 1.766484e-04   p_cons 7.341209e-03   p_joint 1.293956e-04

Joint ci ratio: 1.831581e-01	ci left: 1.139885e-04	ci right 1.372277e-04	k: 457	n:3650000
Cons ci ratio: 2.385041e-02	ci left: 7.258949e-03	ci right 7.434437e-03	k: 26814	n:3650000
KS ci ratio: 1.543362e-01	ci left: 1.630738e-04	ci right 1.906061e-04	k: 644	n:3650000
HS6ST1   3650000 perm   5609 sec   (651 perm/sec)   p_kst 1.764384e-04   p_cons 7.346301e-03   p_joint 1.252055e-04

Joint ci ratio: 1.829584e-01	ci left: 1.139378e-04	ci right 1.371385e-04	k: 458	n:3660000
Cons ci ratio: 2.381623e-02	ci left: 7.260029e-03	ci right 7.435287e-03	k: 26891	n:3660000
KS ci ratio: 1.542167e-01	ci left: 1.628909e-04	ci right 1.903691e-04	k: 645	n:3660000
HS6ST1   3660000 perm   5638 sec   (649 perm/sec)   p_kst 1.762295e-04   p_cons 7.347268e-03   p_joint 1.251366e-04

Joint ci ratio: 1.829585e-01	ci left: 1.136273e-04	ci right 1.367648e-04	k: 458	n:3670000
Cons ci ratio: 2.378442e-02	ci left: 7.259749e-03	ci right 7.434763e-03	k: 26963	n:3670000
KS ci ratio: 1.542167e-01	ci left: 1.624471e-04	ci right 1.898504e-04	k: 645	n:3670000
HS6ST1   3670000 perm   5666 sec   (648 perm/sec)   p_kst 1.757493e-04   p_cons 7.346866e-03   p_joint 1.247956e-04

Joint ci ratio: 1.825611e-01	ci left: 1.138372e-04	ci right 1.369615e-04	k: 460	n:3680000
Cons ci ratio: 2.375450e-02	ci left: 7.258389e-03	ci right 7.433148e-03	k: 27031	n:3680000
KS ci ratio: 1.539786e-01	ci left: 1.625282e-04	ci right 1.898989e-04	k: 647	n:3680000
HS6ST1   3680000 perm   5695 sec   (646 perm/sec)   p_kst 1.758152e-04   p_cons 7.345380e-03   p_joint 1.250000e-04

Joint ci ratio: 1.821664e-01	ci left: 1.140459e-04	ci right 1.371570e-04	k: 462	n:3690000
Cons ci ratio: 2.372073e-02	ci left: 7.259462e-03	ci right 7.433995e-03	k: 27108	n:3690000
KS ci ratio: 1.535055e-01	ci left: 1.631300e-04	ci right 1.905099e-04	k: 651	n:3690000
HS6ST1   3690000 perm   5724 sec   (645 perm/sec)   p_kst 1.764228e-04   p_cons 7.346341e-03   p_joint 1.252033e-04

Joint ci ratio: 1.821664e-01	ci left: 1.137377e-04	ci right 1.367863e-04	k: 462	n:3700000
Cons ci ratio: 2.368754e-02	ci left: 7.260261e-03	ci right 7.434565e-03	k: 27184	n:3700000
KS ci ratio: 1.533879e-01	ci left: 1.629490e-04	ci right 1.902757e-04	k: 652	n:3700000
HS6ST1   3700000 perm   5754 sec   (643 perm/sec)   p_kst 1.762162e-04   p_cons 7.347027e-03   p_joint 1.248649e-04

Joint ci ratio: 1.817742e-01	ci left: 1.139457e-04	ci right 1.369812e-04	k: 464	n:3710000
Cons ci ratio: 2.365449e-02	ci left: 7.261056e-03	ci right 7.435132e-03	k: 27260	n:3710000
KS ci ratio: 1.531535e-01	ci left: 1.630282e-04	ci right 1.903226e-04	k: 654	n:3710000
HS6ST1   3710000 perm   5784 sec   (641 perm/sec)   p_kst 1.762803e-04   p_cons 7.347709e-03   p_joint 1.250674e-04

Joint ci ratio: 1.811906e-01	ci left: 1.144092e-04	ci right 1.374561e-04	k: 467	n:3720000
Cons ci ratio: 2.362593e-02	ci left: 7.259174e-03	ci right 7.432992e-03	k: 27326	n:3720000
KS ci ratio: 1.528040e-01	ci left: 1.633656e-04	ci right 1.906482e-04	k: 657	n:3720000
HS6ST1   3720000 perm   5813 sec   (640 perm/sec)   p_kst 1.766129e-04   p_cons 7.345699e-03   p_joint 1.255376e-04

Joint ci ratio: 1.809974e-01	ci left: 1.143584e-04	ci right 1.373678e-04	k: 468	n:3730000
Cons ci ratio: 2.359704e-02	ci left: 7.257568e-03	ci right 7.431133e-03	k: 27393	n:3730000
KS ci ratio: 1.524568e-01	ci left: 1.637012e-04	ci right 1.909721e-04	k: 660	n:3730000
HS6ST1   3730000 perm   5843 sec   (638 perm/sec)   p_kst 1.769437e-04   p_cons 7.343968e-03   p_joint 1.254692e-04

Joint ci ratio: 1.808047e-01	ci left: 1.143079e-04	ci right 1.372800e-04	k: 469	n:3740000
Cons ci ratio: 2.356696e-02	ci left: 7.256769e-03	ci right 7.430091e-03	k: 27463	n:3740000
KS ci ratio: 1.522267e-01	ci left: 1.637778e-04	ci right 1.910166e-04	k: 662	n:3740000
HS6ST1   3740000 perm   5873 sec   (637 perm/sec)   p_kst 1.770053e-04   p_cons 7.343048e-03   p_joint 1.254011e-04

Joint ci ratio: 1.806127e-01	ci left: 1.142577e-04	ci right 1.371926e-04	k: 470	n:3750000
Cons ci ratio: 2.353743e-02	ci left: 7.255710e-03	ci right 7.428786e-03	k: 27532	n:3750000
KS ci ratio: 1.521120e-01	ci left: 1.635976e-04	ci right 1.907840e-04	k: 663	n:3750000
HS6ST1   3750000 perm   5902 sec   (635 perm/sec)   p_kst 1.768000e-04   p_cons 7.341867e-03   p_joint 1.253333e-04

Joint ci ratio: 1.804213e-01	ci left: 1.142077e-04	ci right 1.371057e-04	k: 471	n:3760000
Cons ci ratio: 2.351401e-02	ci left: 7.250954e-03	ci right 7.423742e-03	k: 27587	n:3760000
KS ci ratio: 1.519976e-01	ci left: 1.634183e-04	ci right 1.905527e-04	k: 664	n:3760000
HS6ST1   3760000 perm   5933 sec   (634 perm/sec)   p_kst 1.765957e-04   p_cons 7.336968e-03   p_joint 1.252660e-04

Joint ci ratio: 1.798506e-01	ci left: 1.146647e-04	ci right 1.375736e-04	k: 474	n:3770000
Cons ci ratio: 2.348382e-02	ci left: 7.250443e-03	ci right 7.422994e-03	k: 27658	n:3770000
KS ci ratio: 1.516559e-01	ci left: 1.637504e-04	ci right 1.908732e-04	k: 667	n:3770000
HS6ST1   3770000 perm   5963 sec   (632 perm/sec)   p_kst 1.769231e-04   p_cons 7.336340e-03   p_joint 1.257294e-04

Joint ci ratio: 1.794731e-01	ci left: 1.148666e-04	ci right 1.377625e-04	k: 476	n:3780000
Cons ci ratio: 2.345375e-02	ci left: 7.249935e-03	ci right 7.422250e-03	k: 27729	n:3780000
KS ci ratio: 1.515425e-01	ci left: 1.635717e-04	ci right 1.906428e-04	k: 668	n:3780000
HS6ST1   3780000 perm   5993 sec   (631 perm/sec)   p_kst 1.767196e-04   p_cons 7.335714e-03   p_joint 1.259259e-04

Joint ci ratio: 1.813848e-01	ci left: 1.120442e-04	ci right 1.346415e-04	k: 466	n:3790000
Cons ci ratio: 2.342294e-02	ci left: 7.249954e-03	ci right 7.422040e-03	k: 27802	n:3790000
KS ci ratio: 1.515426e-01	ci left: 1.631401e-04	ci right 1.901398e-04	k: 668	n:3790000
HS6ST1   3790000 perm   6023 sec   (629 perm/sec)   p_kst 1.762533e-04   p_cons 7.335620e-03   p_joint 1.229551e-04

Joint ci ratio: 1.809976e-01	ci left: 1.122518e-04	ci right 1.348373e-04	k: 468	n:3800000
Cons ci ratio: 2.339140e-02	ci left: 7.250496e-03	ci right 7.422361e-03	k: 27877	n:3800000
KS ci ratio: 1.513165e-01	ci left: 1.632172e-04	ci right 1.901857e-04	k: 670	n:3800000
HS6ST1   3800000 perm   6054 sec   (628 perm/sec)   p_kst 1.763158e-04   p_cons 7.336053e-03   p_joint 1.231579e-04

Joint ci ratio: 1.808049e-01	ci left: 1.122077e-04	ci right 1.347578e-04	k: 469	n:3810000
Cons ci ratio: 2.335495e-02	ci left: 7.254168e-03	ci right 7.425848e-03	k: 27964	n:3810000
KS ci ratio: 1.512039e-01	ci left: 1.630413e-04	ci right 1.899589e-04	k: 671	n:3810000
HS6ST1   3810000 perm   6084 sec   (626 perm/sec)   p_kst 1.761155e-04   p_cons 7.339633e-03   p_joint 1.230971e-04

Joint ci ratio: 1.800404e-01	ci left: 1.129138e-04	ci right 1.354994e-04	k: 473	n:3820000
Cons ci ratio: 2.332997e-02	ci left: 7.250793e-03	ci right 7.422207e-03	k: 28024	n:3820000
KS ci ratio: 1.506445e-01	ci left: 1.638740e-04	ci right 1.908199e-04	k: 676	n:3820000
HS6ST1   3820000 perm   6115 sec   (625 perm/sec)   p_kst 1.769634e-04   p_cons 7.336126e-03   p_joint 1.238220e-04

Joint ci ratio: 1.800404e-01	ci left: 1.126190e-04	ci right 1.351456e-04	k: 473	n:3830000
Cons ci ratio: 2.329589e-02	ci left: 7.253146e-03	ci right 7.424362e-03	k: 28106	n:3830000
KS ci ratio: 1.504224e-01	ci left: 1.639486e-04	ci right 1.908636e-04	k: 678	n:3830000
HS6ST1   3830000 perm   6145 sec   (623 perm/sec)   p_kst 1.770235e-04   p_cons 7.338381e-03   p_joint 1.234987e-04

Joint ci ratio: 1.800404e-01	ci left: 1.123257e-04	ci right 1.347936e-04	k: 473	n:3840000
Cons ci ratio: 2.326404e-02	ci left: 7.254193e-03	ci right 7.425197e-03	k: 28183	n:3840000
KS ci ratio: 1.502014e-01	ci left: 1.640229e-04	ci right 1.909069e-04	k: 680	n:3840000
HS6ST1   3840000 perm   6176 sec   (622 perm/sec)   p_kst 1.770833e-04   p_cons 7.339323e-03   p_joint 1.231771e-04

Joint ci ratio: 1.796618e-01	ci left: 1.125301e-04	ci right 1.349864e-04	k: 475	n:3850000
Cons ci ratio: 2.323438e-02	ci left: 7.253944e-03	ci right 7.424721e-03	k: 28255	n:3850000
KS ci ratio: 1.499813e-01	ci left: 1.640969e-04	ci right 1.909500e-04	k: 682	n:3850000
HS6ST1   3850000 perm   6207 sec   (620 perm/sec)   p_kst 1.771429e-04   p_cons 7.338961e-03   p_joint 1.233766e-04

Joint ci ratio: 1.796618e-01	ci left: 1.122385e-04	ci right 1.346367e-04	k: 475	n:3860000
Cons ci ratio: 2.320979e-02	ci left: 7.250605e-03	ci right 7.421120e-03	k: 28315	n:3860000
KS ci ratio: 1.498716e-01	ci left: 1.639211e-04	ci right 1.907241e-04	k: 683	n:3860000
HS6ST1   3860000 perm   6238 sec   (619 perm/sec)   p_kst 1.769430e-04   p_cons 7.335492e-03   p_joint 1.230570e-04

Joint ci ratio: 1.792855e-01	ci left: 1.124421e-04	ci right 1.348287e-04	k: 477	n:3870000
Cons ci ratio: 2.318446e-02	ci left: 7.247797e-03	ci right 7.418058e-03	k: 28377	n:3870000
KS ci ratio: 1.495440e-01	ci left: 1.642437e-04	ci right 1.910355e-04	k: 686	n:3870000
HS6ST1   3870000 perm   6269 sec   (617 perm/sec)   p_kst 1.772610e-04   p_cons 7.332558e-03   p_joint 1.232558e-04

Joint ci ratio: 1.789116e-01	ci left: 1.126447e-04	ci right 1.350198e-04	k: 479	n:3880000
Cons ci ratio: 2.315347e-02	ci left: 7.248591e-03	ci right 7.418640e-03	k: 28453	n:3880000
KS ci ratio: 1.493268e-01	ci left: 1.643166e-04	ci right 1.910779e-04	k: 688	n:3880000
HS6ST1   3880000 perm   6299 sec   (616 perm/sec)   p_kst 1.773196e-04   p_cons 7.333247e-03   p_joint 1.234536e-04

Joint ci ratio: 1.789116e-01	ci left: 1.123551e-04	ci right 1.346727e-04	k: 479	n:3890000
Cons ci ratio: 2.312301e-02	ci left: 7.249126e-03	ci right 7.418961e-03	k: 28528	n:3890000
KS ci ratio: 1.493269e-01	ci left: 1.638942e-04	ci right 1.905867e-04	k: 688	n:3890000
HS6ST1   3890000 perm   6330 sec   (615 perm/sec)   p_kst 1.768638e-04   p_cons 7.333676e-03   p_joint 1.231362e-04

Joint ci ratio: 1.789117e-01	ci left: 1.120670e-04	ci right 1.343274e-04	k: 479	n:3900000
Cons ci ratio: 2.309674e-02	ci left: 7.247109e-03	ci right 7.416701e-03	k: 28593	n:3900000
KS ci ratio: 1.492186e-01	ci left: 1.637208e-04	ci right 1.903640e-04	k: 689	n:3900000
HS6ST1   3900000 perm   6361 sec   (613 perm/sec)   p_kst 1.766667e-04   p_cons 7.331538e-03   p_joint 1.228205e-04

Joint ci ratio: 1.789117e-01	ci left: 1.117804e-04	ci right 1.339838e-04	k: 479	n:3910000
Cons ci ratio: 2.306407e-02	ci left: 7.249171e-03	ci right 7.418568e-03	k: 28674	n:3910000
KS ci ratio: 1.492187e-01	ci left: 1.633020e-04	ci right 1.898771e-04	k: 689	n:3910000
HS6ST1   3910000 perm   6393 sec   (612 perm/sec)   p_kst 1.762148e-04   p_cons 7.333504e-03   p_joint 1.225064e-04

Joint ci ratio: 1.787256e-01	ci left: 1.117389e-04	ci right 1.339086e-04	k: 480	n:3920000
Cons ci ratio: 2.303315e-02	ci left: 7.250208e-03	ci right 7.419399e-03	k: 28751	n:3920000
KS ci ratio: 1.491107e-01	ci left: 1.631310e-04	ci right 1.896573e-04	k: 690	n:3920000
HS6ST1   3920000 perm   6424 sec   (610 perm/sec)   p_kst 1.760204e-04   p_cons 7.334439e-03   p_joint 1.224490e-04

Joint ci ratio: 1.783552e-01	ci left: 1.119407e-04	ci right 1.340994e-04	k: 482	n:3930000
Cons ci ratio: 2.300638e-02	ci left: 7.248710e-03	ci right 7.417666e-03	k: 28818	n:3930000
KS ci ratio: 1.490029e-01	ci left: 1.629609e-04	ci right 1.894387e-04	k: 691	n:3930000
HS6ST1   3930000 perm   6454 sec   (609 perm/sec)   p_kst 1.758270e-04   p_cons 7.332824e-03   p_joint 1.226463e-04

Joint ci ratio: 1.668346e-01	ci left: 1.284138e-04	ci right 1.520266e-04	k: 551	n:3940000
Cons ci ratio: 2.297850e-02	ci left: 7.247976e-03	ci right 7.416709e-03	k: 28888	n:3940000
KS ci ratio: 1.485741e-01	ci left: 1.635247e-04	ci right 1.900109e-04	k: 695	n:3940000
HS6ST1   3940000 perm   6484 sec   (608 perm/sec)   p_kst 1.763959e-04   p_cons 7.331980e-03   p_joint 1.398477e-04

Joint ci ratio: 1.665331e-01	ci left: 1.285739e-04	ci right 1.521691e-04	k: 553	n:3950000
Cons ci ratio: 2.294833e-02	ci left: 7.248757e-03	ci right 7.417283e-03	k: 28964	n:3950000
KS ci ratio: 1.484675e-01	ci left: 1.633545e-04	ci right 1.897924e-04	k: 696	n:3950000
HS6ST1   3950000 perm   6515 sec   (606 perm/sec)   p_kst 1.762025e-04   p_cons 7.332658e-03   p_joint 1.400000e-04

Joint ci ratio: 1.663831e-01	ci left: 1.284912e-04	ci right 1.520479e-04	k: 554	n:3960000
Cons ci ratio: 2.291947e-02	ci left: 7.248781e-03	ci right 7.417093e-03	k: 29037	n:3960000
KS ci ratio: 1.483611e-01	ci left: 1.631851e-04	ci right 1.895750e-04	k: 697	n:3960000
HS6ST1   3960000 perm   6545 sec   (605 perm/sec)   p_kst 1.760101e-04   p_cons 7.332576e-03   p_joint 1.398990e-04

Joint ci ratio: 1.659351e-01	ci left: 1.288918e-04	ci right 1.524520e-04	k: 557	n:3970000
Cons ci ratio: 2.289507e-02	ci left: 7.246049e-03	ci right 7.414116e-03	k: 29099	n:3970000
KS ci ratio: 1.480433e-01	ci left: 1.635017e-04	ci right 1.898812e-04	k: 700	n:3970000
HS6ST1   3970000 perm   6577 sec   (604 perm/sec)   p_kst 1.763224e-04   p_cons 7.329723e-03   p_joint 1.403023e-04

Joint ci ratio: 1.656386e-01	ci left: 1.290496e-04	ci right 1.525923e-04	k: 559	n:3980000
Cons ci ratio: 2.286680e-02	ci left: 7.245830e-03	ci right 7.413682e-03	k: 29171	n:3980000
KS ci ratio: 1.478325e-01	ci left: 1.635748e-04	ci right 1.899252e-04	k: 702	n:3980000
HS6ST1   3980000 perm   6608 sec   (602 perm/sec)   p_kst 1.763819e-04   p_cons 7.329397e-03   p_joint 1.404523e-04

Joint ci ratio: 1.654909e-01	ci left: 1.289664e-04	ci right 1.524709e-04	k: 560	n:3990000
Cons ci ratio: 2.283038e-02	ci left: 7.250845e-03	ci right 7.418542e-03	k: 29264	n:3990000
KS ci ratio: 1.477275e-01	ci left: 1.634062e-04	ci right 1.897091e-04	k: 703	n:3990000
HS6ST1   3990000 perm   6639 sec   (601 perm/sec)   p_kst 1.761905e-04   p_cons 7.334336e-03   p_joint 1.403509e-04

Joint ci ratio: 1.654909e-01	ci left: 1.286440e-04	ci right 1.520897e-04	k: 560	n:4000000
Cons ci ratio: 2.280588e-02	ci left: 7.248378e-03	ci right 7.415836e-03	k: 29327	n:4000000
KS ci ratio: 1.477275e-01	ci left: 1.629977e-04	ci right 1.892348e-04	k: 703	n:4000000
HS6ST1   4000000 perm   6670 sec   (600 perm/sec)   p_kst 1.757500e-04   p_cons 7.331750e-03   p_joint 1.400000e-04

Joint ci ratio: 1.651967e-01	ci left: 1.288013e-04	ci right 1.522298e-04	k: 562	n:4010000
Cons ci ratio: 2.277326e-02	ci left: 7.251131e-03	ci right 7.418410e-03	k: 29411	n:4010000
KS ci ratio: 1.474138e-01	ci left: 1.633117e-04	ci right 1.895386e-04	k: 706	n:4010000
HS6ST1   4010000 perm   6702 sec   (598 perm/sec)   p_kst 1.760599e-04   p_cons 7.334414e-03   p_joint 1.401496e-04

Joint ci ratio: 1.650502e-01	ci left: 1.287194e-04	ci right 1.521101e-04	k: 563	n:4020000
Cons ci ratio: 2.274117e-02	ci left: 7.253623e-03	ci right 7.420720e-03	k: 29494	n:4020000
KS ci ratio: 1.472057e-01	ci left: 1.633847e-04	ci right 1.895830e-04	k: 708	n:4020000
HS6ST1   4020000 perm   6734 sec   (597 perm/sec)   p_kst 1.761194e-04   p_cons 7.336816e-03   p_joint 1.400498e-04

Joint ci ratio: 1.647583e-01	ci left: 1.288758e-04	ci right 1.522494e-04	k: 565	n:4030000
Cons ci ratio: 2.271269e-02	ci left: 7.253882e-03	ci right 7.420773e-03	k: 29568	n:4030000
KS ci ratio: 1.467921e-01	ci left: 1.639353e-04	ci right 1.901416e-04	k: 712	n:4030000
HS6ST1   4030000 perm   6765 sec   (596 perm/sec)   p_kst 1.766749e-04   p_cons 7.336973e-03   p_joint 1.401985e-04

Joint ci ratio: 1.647583e-01	ci left: 1.285568e-04	ci right 1.518726e-04	k: 565	n:4040000
Cons ci ratio: 2.268933e-02	ci left: 7.250940e-03	ci right 7.417589e-03	k: 29629	n:4040000
KS ci ratio: 1.465867e-01	ci left: 1.640064e-04	ci right 1.901841e-04	k: 714	n:4040000
HS6ST1   4040000 perm   6797 sec   (594 perm/sec)   p_kst 1.767327e-04   p_cons 7.333911e-03   p_joint 1.398515e-04

Joint ci ratio: 1.644680e-01	ci left: 1.287128e-04	ci right 1.520117e-04	k: 567	n:4050000
Cons ci ratio: 2.265721e-02	ci left: 7.253659e-03	ci right 7.420133e-03	k: 29713	n:4050000
KS ci ratio: 1.464843e-01	ci left: 1.638393e-04	ci right 1.899705e-04	k: 715	n:4050000
HS6ST1   4050000 perm   6828 sec   (593 perm/sec)   p_kst 1.765432e-04   p_cons 7.336543e-03   p_joint 1.400000e-04

Joint ci ratio: 1.640353e-01	ci left: 1.291043e-04	ci right 1.524066e-04	k: 570	n:4060000
Cons ci ratio: 2.262407e-02	ci left: 7.257101e-03	ci right 7.423406e-03	k: 29800	n:4060000
KS ci ratio: 1.460768e-01	ci left: 1.643849e-04	ci right 1.905238e-04	k: 719	n:4060000
HS6ST1   4060000 perm   6860 sec   (592 perm/sec)   p_kst 1.770936e-04   p_cons 7.339901e-03   p_joint 1.403941e-04

Joint ci ratio: 1.638919e-01	ci left: 1.290228e-04	ci right 1.522879e-04	k: 571	n:4070000
Cons ci ratio: 2.259832e-02	ci left: 7.255883e-03	ci right 7.421969e-03	k: 29868	n:4070000
KS ci ratio: 1.459755e-01	ci left: 1.642178e-04	ci right 1.903104e-04	k: 720	n:4070000
HS6ST1   4070000 perm   6893 sec   (590 perm/sec)   p_kst 1.769042e-04   p_cons 7.338575e-03   p_joint 1.402948e-04

Joint ci ratio: 1.637488e-01	ci left: 1.289416e-04	ci right 1.521698e-04	k: 572	n:4080000
Cons ci ratio: 2.256810e-02	ci left: 7.257596e-03	ci right 7.423496e-03	k: 29948	n:4080000
KS ci ratio: 1.458744e-01	ci left: 1.640514e-04	ci right 1.900980e-04	k: 721	n:4080000
HS6ST1   4080000 perm   6925 sec   (589 perm/sec)   p_kst 1.767157e-04   p_cons 7.340196e-03   p_joint 1.401961e-04

Joint ci ratio: 1.634638e-01	ci left: 1.290953e-04	ci right 1.523067e-04	k: 574	n:4090000
Cons ci ratio: 2.254292e-02	ci left: 7.256141e-03	ci right 7.421820e-03	k: 30015	n:4090000
KS ci ratio: 1.455722e-01	ci left: 1.643571e-04	ci right 1.903934e-04	k: 724	n:4090000
HS6ST1   4090000 perm   6957 sec   (588 perm/sec)   p_kst 1.770171e-04   p_cons 7.338631e-03   p_joint 1.403423e-04

Joint ci ratio: 1.634638e-01	ci left: 1.287804e-04	ci right 1.519352e-04	k: 574	n:4100000
Cons ci ratio: 2.251970e-02	ci left: 7.253479e-03	ci right 7.418925e-03	k: 30077	n:4100000
KS ci ratio: 1.455723e-01	ci left: 1.639562e-04	ci right 1.899291e-04	k: 724	n:4100000
HS6ST1   4100000 perm   6989 sec   (587 perm/sec)   p_kst 1.765854e-04   p_cons 7.335854e-03   p_joint 1.400000e-04

Joint ci ratio: 1.633219e-01	ci left: 1.287004e-04	ci right 1.518188e-04	k: 575	n:4110000
Cons ci ratio: 2.249280e-02	ci left: 7.253251e-03	ci right 7.418491e-03	k: 30149	n:4110000
KS ci ratio: 1.454720e-01	ci left: 1.637917e-04	ci right 1.897191e-04	k: 725	n:4110000
HS6ST1   4110000 perm   7021 sec   (585 perm/sec)   p_kst 1.763990e-04   p_cons 7.335523e-03   p_joint 1.399027e-04

Joint ci ratio: 1.631803e-01	ci left: 1.286209e-04	ci right 1.517029e-04	k: 576	n:4120000
Cons ci ratio: 2.246150e-02	ci left: 7.255919e-03	ci right 7.420988e-03	k: 30233	n:4120000
KS ci ratio: 1.453719e-01	ci left: 1.636281e-04	ci right 1.895102e-04	k: 726	n:4120000
HS6ST1   4120000 perm   7053 sec   (584 perm/sec)   p_kst 1.762136e-04   p_cons 7.338107e-03   p_joint 1.398058e-04

Joint ci ratio: 1.688353e-01	ci left: 1.194906e-04	ci right 1.417529e-04	k: 538	n:4130000
Cons ci ratio: 2.243742e-02	ci left: 7.254001e-03	ci right 7.418846e-03	k: 30298	n:4130000
KS ci ratio: 1.449736e-01	ci left: 1.641652e-04	ci right 1.900550e-04	k: 730	n:4130000
HS6ST1   4130000 perm   7085 sec   (583 perm/sec)   p_kst 1.767554e-04   p_cons 7.336077e-03   p_joint 1.302663e-04

Joint ci ratio: 1.685229e-01	ci left: 1.196646e-04	ci right 1.419140e-04	k: 540	n:4140000
Cons ci ratio: 2.240821e-02	ci left: 7.255454e-03	ci right 7.420115e-03	k: 30377	n:4140000
KS ci ratio: 1.446770e-01	ci left: 1.644671e-04	ci right 1.903468e-04	k: 733	n:4140000
HS6ST1   4140000 perm   7117 sec   (582 perm/sec)   p_kst 1.770531e-04   p_cons 7.337440e-03   p_joint 1.304348e-04

Joint ci ratio: 1.685230e-01	ci left: 1.193763e-04	ci right 1.415720e-04	k: 540	n:4150000
Cons ci ratio: 2.238430e-02	ci left: 7.253546e-03	ci right 7.417986e-03	k: 30442	n:4150000
KS ci ratio: 1.445786e-01	ci left: 1.643030e-04	ci right 1.901378e-04	k: 734	n:4150000
HS6ST1   4150000 perm   7150 sec   (580 perm/sec)   p_kst 1.768675e-04   p_cons 7.335422e-03   p_joint 1.301205e-04

Joint ci ratio: 1.679033e-01	ci left: 1.200104e-04	ci right 1.422337e-04	k: 544	n:4160000
Cons ci ratio: 2.235972e-02	ci left: 7.252125e-03	ci right 7.416350e-03	k: 30509	n:4160000
KS ci ratio: 1.442844e-01	ci left: 1.646031e-04	ci right 1.904279e-04	k: 737	n:4160000
HS6ST1   4160000 perm   7182 sec   (579 perm/sec)   p_kst 1.771635e-04   p_cons 7.333894e-03   p_joint 1.307692e-04

Joint ci ratio: 1.677495e-01	ci left: 1.199523e-04	ci right 1.421425e-04	k: 545	n:4170000
Cons ci ratio: 2.233450e-02	ci left: 7.251188e-03	ci right 7.415204e-03	k: 30578	n:4170000
KS ci ratio: 1.441867e-01	ci left: 1.644395e-04	ci right 1.902197e-04	k: 738	n:4170000
HS6ST1   4170000 perm   7214 sec   (578 perm/sec)   p_kst 1.769784e-04   p_cons 7.332854e-03   p_joint 1.306954e-04

Joint ci ratio: 1.675961e-01	ci left: 1.198946e-04	ci right 1.420517e-04	k: 546	n:4180000
Cons ci ratio: 2.230532e-02	ci left: 7.252873e-03	ci right 7.416710e-03	k: 30658	n:4180000
KS ci ratio: 1.440893e-01	ci left: 1.642768e-04	ci right 1.900125e-04	k: 739	n:4180000
HS6ST1   4180000 perm   7246 sec   (577 perm/sec)   p_kst 1.767943e-04   p_cons 7.334450e-03   p_joint 1.306220e-04

Joint ci ratio: 1.672905e-01	ci left: 1.200657e-04	ci right 1.422100e-04	k: 548	n:4190000
Cons ci ratio: 2.227918e-02	ci left: 7.252651e-03	ci right 7.416289e-03	k: 30730	n:4190000
KS ci ratio: 1.437981e-01	ci left: 1.645749e-04	ci right 1.903008e-04	k: 742	n:4190000
HS6ST1   4190000 perm   7279 sec   (576 perm/sec)   p_kst 1.770883e-04   p_cons 7.334129e-03   p_joint 1.307876e-04

Joint ci ratio: 1.671384e-01	ci left: 1.200080e-04	ci right 1.421194e-04	k: 549	n:4200000
Cons ci ratio: 2.225349e-02	ci left: 7.252194e-03	ci right 7.415630e-03	k: 30801	n:4200000
KS ci ratio: 1.435086e-01	ci left: 1.648717e-04	ci right 1.905876e-04	k: 745	n:4200000
HS6ST1   4200000 perm   7311 sec   (574 perm/sec)   p_kst 1.773810e-04   p_cons 7.333571e-03   p_joint 1.307143e-04

Joint ci ratio: 1.669867e-01	ci left: 1.199505e-04	ci right 1.420293e-04	k: 550	n:4210000
Cons ci ratio: 2.222789e-02	ci left: 7.251738e-03	ci right 7.414974e-03	k: 30872	n:4210000
KS ci ratio: 1.432209e-01	ci left: 1.651671e-04	ci right 1.908730e-04	k: 748	n:4210000
HS6ST1   4210000 perm   7344 sec   (573 perm/sec)   p_kst 1.776722e-04   p_cons 7.333017e-03   p_joint 1.306413e-04

Joint ci ratio: 1.668353e-01	ci left: 1.198934e-04	ci right 1.419396e-04	k: 551	n:4220000
Cons ci ratio: 2.220022e-02	ci left: 7.252699e-03	ci right 7.415750e-03	k: 30949	n:4220000
KS ci ratio: 1.432210e-01	ci left: 1.647757e-04	ci right 1.904207e-04	k: 748	n:4220000
HS6ST1   4220000 perm   7378 sec   (572 perm/sec)   p_kst 1.772512e-04   p_cons 7.333886e-03   p_joint 1.305687e-04

Joint ci ratio: 1.715631e-01	ci left: 1.128180e-04	ci right 1.342119e-04	k: 521	n:4230000
Cons ci ratio: 2.217624e-02	ci left: 7.251305e-03	ci right 7.414146e-03	k: 31016	n:4230000
KS ci ratio: 1.430301e-01	ci left: 1.648420e-04	ci right 1.904603e-04	k: 750	n:4230000
HS6ST1   4230000 perm   7411 sec   (571 perm/sec)   p_kst 1.773050e-04   p_cons 7.332388e-03   p_joint 1.231678e-04

Joint ci ratio: 1.712354e-01	ci left: 1.130033e-04	ci right 1.343873e-04	k: 523	n:4240000
Cons ci ratio: 2.214697e-02	ci left: 7.253435e-03	ci right 7.416107e-03	k: 31098	n:4240000
KS ci ratio: 1.429350e-01	ci left: 1.646807e-04	ci right 1.902554e-04	k: 751	n:4240000
HS6ST1   4240000 perm   7445 sec   (570 perm/sec)   p_kst 1.771226e-04   p_cons 7.334434e-03   p_joint 1.233491e-04

Joint ci ratio: 1.712354e-01	ci left: 1.127374e-04	ci right 1.340711e-04	k: 523	n:4250000
Cons ci ratio: 2.212138e-02	ci left: 7.253216e-03	ci right 7.415692e-03	k: 31170	n:4250000
KS ci ratio: 1.428401e-01	ci left: 1.645201e-04	ci right 1.900514e-04	k: 752	n:4250000
HS6ST1   4250000 perm   7479 sec   (568 perm/sec)   p_kst 1.769412e-04   p_cons 7.334118e-03   p_joint 1.230588e-04

Joint ci ratio: 1.712354e-01	ci left: 1.124728e-04	ci right 1.337563e-04	k: 523	n:4260000
Cons ci ratio: 2.209588e-02	ci left: 7.252997e-03	ci right 7.415279e-03	k: 31242	n:4260000
KS ci ratio: 1.428401e-01	ci left: 1.641339e-04	ci right 1.896053e-04	k: 752	n:4260000
HS6ST1   4260000 perm   7512 sec   (567 perm/sec)   p_kst 1.765258e-04   p_cons 7.333803e-03   p_joint 1.227700e-04

Joint ci ratio: 1.710723e-01	ci left: 1.124336e-04	ci right 1.336873e-04	k: 524	n:4270000
Cons ci ratio: 2.207188e-02	ci left: 7.251848e-03	ci right 7.413926e-03	k: 31310	n:4270000
KS ci ratio: 1.426508e-01	ci left: 1.642011e-04	ci right 1.896464e-04	k: 754	n:4270000
HS6ST1   4270000 perm   7545 sec   (566 perm/sec)   p_kst 1.765808e-04   p_cons 7.332553e-03   p_joint 1.227166e-04

Joint ci ratio: 1.843715e-01	ci left: 9.587236e-05	ci right 1.155621e-04	k: 451	n:4280000
Cons ci ratio: 2.204903e-02	ci left: 7.250008e-03	ci right 7.411875e-03	k: 31375	n:4280000
KS ci ratio: 1.426508e-01	ci left: 1.638175e-04	ci right 1.892033e-04	k: 754	n:4280000
HS6ST1   4280000 perm   7578 sec   (565 perm/sec)   p_kst 1.761682e-04   p_cons 7.330607e-03   p_joint 1.053738e-04

Joint ci ratio: 1.843716e-01	ci left: 9.564888e-05	ci right 1.152927e-04	k: 451	n:4290000
Cons ci ratio: 2.202307e-02	ci left: 7.250262e-03	ci right 7.411942e-03	k: 31449	n:4290000
KS ci ratio: 1.426508e-01	ci left: 1.634356e-04	ci right 1.887622e-04	k: 754	n:4290000
HS6ST1   4290000 perm   7611 sec   (564 perm/sec)   p_kst 1.757576e-04   p_cons 7.330769e-03   p_joint 1.051282e-04

Joint ci ratio: 1.841679e-01	ci left: 9.564827e-05	ci right 1.152679e-04	k: 452	n:4300000
Cons ci ratio: 2.199897e-02	ci left: 7.249360e-03	ci right 7.410840e-03	k: 31518	n:4300000
KS ci ratio: 1.421808e-01	ci left: 1.641769e-04	ci right 1.895274e-04	k: 759	n:4300000
HS6ST1   4300000 perm   7645 sec   (562 perm/sec)   p_kst 1.765116e-04   p_cons 7.329767e-03   p_joint 1.051163e-04

Joint ci ratio: 1.837627e-01	ci left: 9.586902e-05	ci right 1.154858e-04	k: 454	n:4310000
Cons ci ratio: 2.197178e-02	ci left: 7.250538e-03	ci right 7.411842e-03	k: 31596	n:4310000
KS ci ratio: 1.418080e-01	ci left: 1.646911e-04	ci right 1.900487e-04	k: 763	n:4310000
HS6ST1   4310000 perm   7679 sec   (561 perm/sec)   p_kst 1.770302e-04   p_cons 7.330858e-03   p_joint 1.053364e-04

Joint ci ratio: 1.835611e-01	ci left: 9.586794e-05	ci right 1.154606e-04	k: 455	n:4320000
Cons ci ratio: 2.194889e-02	ci left: 7.248948e-03	ci right 7.410047e-03	k: 31662	n:4320000
KS ci ratio: 1.417153e-01	ci left: 1.645331e-04	ci right 1.898485e-04	k: 764	n:4320000
HS6ST1   4320000 perm   7713 sec   (560 perm/sec)   p_kst 1.768519e-04   p_cons 7.329167e-03   p_joint 1.053241e-04

Joint ci ratio: 1.829602e-01	ci left: 9.630760e-05	ci right 1.159185e-04	k: 458	n:4330000
Cons ci ratio: 2.192050e-02	ci left: 7.251041e-03	ci right 7.411975e-03	k: 31744	n:4330000
KS ci ratio: 1.413462e-01	ci left: 1.650442e-04	ci right 1.903665e-04	k: 768	n:4330000
HS6ST1   4330000 perm   7746 sec   (559 perm/sec)   p_kst 1.773672e-04   p_cons 7.331178e-03   p_joint 1.057737e-04

Joint ci ratio: 1.827612e-01	ci left: 9.630556e-05	ci right 1.158924e-04	k: 459	n:4340000
Cons ci ratio: 2.189188e-02	ci left: 7.253353e-03	ci right 7.414126e-03	k: 31827	n:4340000
KS ci ratio: 1.412544e-01	ci left: 1.648862e-04	ci right 1.901664e-04	k: 769	n:4340000
HS6ST1   4340000 perm   7780 sec   (558 perm/sec)   p_kst 1.771889e-04   p_cons 7.333410e-03   p_joint 1.057604e-04

Joint ci ratio: 1.827613e-01	ci left: 9.608417e-05	ci right 1.156260e-04	k: 459	n:4350000
Cons ci ratio: 2.186578e-02	ci left: 7.254054e-03	ci right 7.414649e-03	k: 31903	n:4350000
KS ci ratio: 1.412545e-01	ci left: 1.645072e-04	ci right 1.897293e-04	k: 769	n:4350000
HS6ST1   4350000 perm   7814 sec   (557 perm/sec)   p_kst 1.767816e-04   p_cons 7.334023e-03   p_joint 1.055172e-04

Joint ci ratio: 1.827613e-01	ci left: 9.586379e-05	ci right 1.153608e-04	k: 459	n:4360000
Cons ci ratio: 2.183771e-02	ci left: 7.256121e-03	ci right 7.416553e-03	k: 31985	n:4360000
KS ci ratio: 1.412545e-01	ci left: 1.641298e-04	ci right 1.892941e-04	k: 769	n:4360000
HS6ST1   4360000 perm   7849 sec   (556 perm/sec)   p_kst 1.763761e-04   p_cons 7.336009e-03   p_joint 1.052752e-04

Joint ci ratio: 1.823652e-01	ci left: 9.608117e-05	ci right 1.155754e-04	k: 461	n:4370000
Cons ci ratio: 2.180872e-02	ci left: 7.258862e-03	ci right 7.419138e-03	k: 32070	n:4370000
KS ci ratio: 1.408890e-01	ci left: 1.646373e-04	ci right 1.898086e-04	k: 773	n:4370000
HS6ST1   4370000 perm   7882 sec   (554 perm/sec)   p_kst 1.768879e-04   p_cons 7.338673e-03   p_joint 1.054920e-04

Joint ci ratio: 1.819718e-01	ci left: 9.629761e-05	ci right 1.157889e-04	k: 463	n:4380000
Cons ci ratio: 2.178429e-02	ci left: 7.258638e-03	ci right 7.418727e-03	k: 32142	n:4380000
KS ci ratio: 1.405263e-01	ci left: 1.651425e-04	ci right 1.903206e-04	k: 777	n:4380000
HS6ST1   4380000 perm   7916 sec   (553 perm/sec)   p_kst 1.773973e-04   p_cons 7.338356e-03   p_joint 1.057078e-04

Joint ci ratio: 1.819718e-01	ci left: 9.607825e-05	ci right 1.155251e-04	k: 463	n:4390000
Cons ci ratio: 2.175483e-02	ci left: 7.261813e-03	ci right 7.421753e-03	k: 32229	n:4390000
KS ci ratio: 1.405263e-01	ci left: 1.647663e-04	ci right 1.898870e-04	k: 777	n:4390000
HS6ST1   4390000 perm   7952 sec   (552 perm/sec)   p_kst 1.769932e-04   p_cons 7.341458e-03   p_joint 1.054670e-04

Joint ci ratio: 1.815809e-01	ci left: 9.629376e-05	ci right 1.157378e-04	k: 465	n:4400000
Cons ci ratio: 2.172753e-02	ci left: 7.263618e-03	ci right 7.423395e-03	k: 32310	n:4400000
KS ci ratio: 1.402562e-01	ci left: 1.650497e-04	ci right 1.901612e-04	k: 780	n:4400000
HS6ST1   4400000 perm   7986 sec   (551 perm/sec)   p_kst 1.772727e-04   p_cons 7.343182e-03   p_joint 1.056818e-04

Joint ci ratio: 1.811924e-01	ci left: 9.650833e-05	ci right 1.159494e-04	k: 467	n:4410000
Cons ci ratio: 2.170201e-02	ci left: 7.264287e-03	ci right 7.423889e-03	k: 32386	n:4410000
KS ci ratio: 1.401665e-01	ci left: 1.648943e-04	ci right 1.899647e-04	k: 781	n:4410000
HS6ST1   4410000 perm   8020 sec   (550 perm/sec)   p_kst 1.770975e-04   p_cons 7.343764e-03   p_joint 1.058957e-04

Joint ci ratio: 1.809992e-01	ci left: 9.650597e-05	ci right 1.159236e-04	k: 468	n:4420000
Cons ci ratio: 2.167928e-02	ci left: 7.263153e-03	ci right 7.422561e-03	k: 32454	n:4420000
KS ci ratio: 1.399876e-01	ci left: 1.649578e-04	ci right 1.900033e-04	k: 783	n:4420000
HS6ST1   4420000 perm   8054 sec   (549 perm/sec)   p_kst 1.771493e-04   p_cons 7.342534e-03   p_joint 1.058824e-04

Joint ci ratio: 1.809992e-01	ci left: 9.628813e-05	ci right 1.156619e-04	k: 468	n:4430000
Cons ci ratio: 2.165830e-02	ci left: 7.260902e-03	ci right 7.420104e-03	k: 32517	n:4430000
KS ci ratio: 1.398984e-01	ci left: 1.648033e-04	ci right 1.898080e-04	k: 784	n:4430000
HS6ST1   4430000 perm   8088 sec   (548 perm/sec)   p_kst 1.769752e-04   p_cons 7.340181e-03   p_joint 1.056433e-04

Joint ci ratio: 1.808065e-01	ci left: 9.628629e-05	ci right 1.156368e-04	k: 469	n:4440000
Cons ci ratio: 2.163536e-02	ci left: 7.260005e-03	ci right 7.419017e-03	k: 32586	n:4440000
KS ci ratio: 1.398094e-01	ci left: 1.646495e-04	ci right 1.896136e-04	k: 785	n:4440000
HS6ST1   4440000 perm   8122 sec   (547 perm/sec)   p_kst 1.768018e-04   p_cons 7.339189e-03   p_joint 1.056306e-04

Joint ci ratio: 1.808065e-01	ci left: 9.606991e-05	ci right 1.153770e-04	k: 469	n:4450000
Cons ci ratio: 2.161884e-02	ci left: 7.254866e-03	ci right 7.413642e-03	k: 32636	n:4450000
KS ci ratio: 1.397205e-01	ci left: 1.644963e-04	ci right 1.894201e-04	k: 786	n:4450000
HS6ST1   4450000 perm   8156 sec   (546 perm/sec)   p_kst 1.766292e-04   p_cons 7.333933e-03   p_joint 1.053933e-04

Joint ci ratio: 1.806145e-01	ci left: 9.606858e-05	ci right 1.153526e-04	k: 470	n:4460000
Cons ci ratio: 2.159404e-02	ci left: 7.255324e-03	ci right 7.413926e-03	k: 32711	n:4460000
KS ci ratio: 1.395433e-01	ci left: 1.645603e-04	ci right 1.894595e-04	k: 788	n:4460000
HS6ST1   4460000 perm   8191 sec   (544 perm/sec)   p_kst 1.766816e-04   p_cons 7.334305e-03   p_joint 1.053812e-04

Joint ci ratio: 1.806145e-01	ci left: 9.585366e-05	ci right 1.150946e-04	k: 470	n:4470000
Cons ci ratio: 2.157529e-02	ci left: 7.251776e-03	ci right 7.410161e-03	k: 32768	n:4470000
KS ci ratio: 1.394550e-01	ci left: 1.644080e-04	ci right 1.892671e-04	k: 789	n:4470000
HS6ST1   4470000 perm   8226 sec   (543 perm/sec)   p_kst 1.765101e-04   p_cons 7.330649e-03   p_joint 1.051454e-04

Joint ci ratio: 1.802323e-01	ci left: 9.606597e-05	ci right 1.153042e-04	k: 472	n:4480000
Cons ci ratio: 2.154932e-02	ci left: 7.253128e-03	ci right 7.411349e-03	k: 32847	n:4480000
KS ci ratio: 1.392788e-01	ci left: 1.644719e-04	ci right 1.893067e-04	k: 791	n:4480000
HS6ST1   4480000 perm   8261 sec   (542 perm/sec)   p_kst 1.765625e-04   p_cons 7.331920e-03   p_joint 1.053571e-04

Joint ci ratio: 1.798524e-01	ci left: 9.627738e-05	ci right 1.155129e-04	k: 474	n:4490000
Cons ci ratio: 2.151817e-02	ci left: 7.258018e-03	ci right 7.416115e-03	k: 32942	n:4490000
KS ci ratio: 1.391910e-01	ci left: 1.643206e-04	ci right 1.891155e-04	k: 792	n:4490000
HS6ST1   4490000 perm   8295 sec   (541 perm/sec)   p_kst 1.763920e-04   p_cons 7.336748e-03   p_joint 1.055679e-04

Joint ci ratio: 1.798524e-01	ci left: 9.606343e-05	ci right 1.152562e-04	k: 474	n:4500000
Cons ci ratio: 2.149568e-02	ci left: 7.257140e-03	ci right 7.415050e-03	k: 33011	n:4500000
KS ci ratio: 1.391910e-01	ci left: 1.639554e-04	ci right 1.886953e-04	k: 792	n:4500000
HS6ST1   4500000 perm   8329 sec   (540 perm/sec)   p_kst 1.760000e-04   p_cons 7.335778e-03   p_joint 1.053333e-04

Joint ci ratio: 1.798524e-01	ci left: 9.585043e-05	ci right 1.150007e-04	k: 474	n:4510000
Cons ci ratio: 2.147098e-02	ci left: 7.257810e-03	ci right 7.415551e-03	k: 33087	n:4510000
KS ci ratio: 1.391033e-01	ci left: 1.638059e-04	ci right 1.885063e-04	k: 793	n:4510000
HS6ST1   4510000 perm   8365 sec   (539 perm/sec)   p_kst 1.758315e-04   p_cons 7.336364e-03   p_joint 1.050998e-04

Joint ci ratio: 1.796634e-01	ci left: 9.584965e-05	ci right 1.149774e-04	k: 475	n:4520000
Cons ci ratio: 2.144538e-02	ci left: 7.259137e-03	ci right 7.416716e-03	k: 33166	n:4520000
KS ci ratio: 1.390158e-01	ci left: 1.636570e-04	ci right 1.883182e-04	k: 794	n:4520000
HS6ST1   4520000 perm   8400 sec   (538 perm/sec)   p_kst 1.756637e-04   p_cons 7.337611e-03   p_joint 1.050885e-04

Joint ci ratio: 1.794750e-01	ci left: 9.584889e-05	ci right 1.149543e-04	k: 476	n:4530000
Cons ci ratio: 2.142117e-02	ci left: 7.259580e-03	ci right 7.416989e-03	k: 33241	n:4530000
KS ci ratio: 1.388413e-01	ci left: 1.637219e-04	ci right 1.883593e-04	k: 796	n:4530000
HS6ST1   4530000 perm   8434 sec   (537 perm/sec)   p_kst 1.757174e-04   p_cons 7.337969e-03   p_joint 1.050773e-04

Joint ci ratio: 1.790999e-01	ci left: 9.605853e-05	ci right 1.151613e-04	k: 478	n:4540000
Cons ci ratio: 2.139510e-02	ci left: 7.261336e-03	ci right 7.418589e-03	k: 33322	n:4540000
KS ci ratio: 1.385807e-01	ci left: 1.639991e-04	ci right 1.886281e-04	k: 799	n:4540000
HS6ST1   4540000 perm   8470 sec   (536 perm/sec)   p_kst 1.759912e-04   p_cons 7.339648e-03   p_joint 1.052863e-04

Joint ci ratio: 1.790999e-01	ci left: 9.584741e-05	ci right 1.149082e-04	k: 478	n:4550000
Cons ci ratio: 2.137428e-02	ci left: 7.259586e-03	ci right 7.416646e-03	k: 33387	n:4550000
KS ci ratio: 1.384078e-01	ci left: 1.640630e-04	ci right 1.886683e-04	k: 801	n:4550000
HS6ST1   4550000 perm   8505 sec   (535 perm/sec)   p_kst 1.760440e-04   p_cons 7.337802e-03   p_joint 1.050549e-04

Joint ci ratio: 1.787272e-01	ci left: 9.605618e-05	ci right 1.151145e-04	k: 480	n:4560000
Cons ci ratio: 2.135771e-02	ci left: 7.255008e-03	ci right 7.411846e-03	k: 33439	n:4560000
KS ci ratio: 1.381496e-01	ci left: 1.643384e-04	ci right 1.889352e-04	k: 804	n:4560000
HS6ST1   4560000 perm   8541 sec   (534 perm/sec)   p_kst 1.763158e-04   p_cons 7.333114e-03   p_joint 1.052632e-04

Joint ci ratio: 1.787272e-01	ci left: 9.584599e-05	ci right 1.148626e-04	k: 480	n:4570000
Cons ci ratio: 2.133668e-02	ci left: 7.253498e-03	ci right 7.410147e-03	k: 33505	n:4570000
KS ci ratio: 1.381497e-01	ci left: 1.639788e-04	ci right 1.885218e-04	k: 804	n:4570000
HS6ST1   4570000 perm   8577 sec   (533 perm/sec)   p_kst 1.759300e-04   p_cons 7.331510e-03   p_joint 1.050328e-04

Joint ci ratio: 1.787272e-01	ci left: 9.563672e-05	ci right 1.146118e-04	k: 480	n:4580000
Cons ci ratio: 2.131635e-02	ci left: 7.251560e-03	ci right 7.408016e-03	k: 33569	n:4580000
KS ci ratio: 1.380639e-01	ci left: 1.638315e-04	ci right 1.883361e-04	k: 805	n:4580000
HS6ST1   4580000 perm   8612 sec   (532 perm/sec)   p_kst 1.757642e-04   p_cons 7.329476e-03   p_joint 1.048035e-04

Joint ci ratio: 1.787272e-01	ci left: 9.542836e-05	ci right 1.143621e-04	k: 480	n:4590000
Cons ci ratio: 2.129353e-02	ci left: 7.251364e-03	ci right 7.407646e-03	k: 33641	n:4590000
KS ci ratio: 1.380640e-01	ci left: 1.634746e-04	ci right 1.879258e-04	k: 805	n:4590000
HS6ST1   4590000 perm   8648 sec   (531 perm/sec)   p_kst 1.753813e-04   p_cons 7.329194e-03   p_joint 1.045752e-04

Joint ci ratio: 1.785417e-01	ci left: 9.542857e-05	ci right 1.143406e-04	k: 481	n:4600000
Cons ci ratio: 2.126856e-02	ci left: 7.252683e-03	ci right 7.408808e-03	k: 33720	n:4600000
KS ci ratio: 1.379784e-01	ci left: 1.633291e-04	ci right 1.877421e-04	k: 806	n:4600000
HS6ST1   4600000 perm   8684 sec   (530 perm/sec)   p_kst 1.752174e-04   p_cons 7.330435e-03   p_joint 1.045652e-04

Joint ci ratio: 1.783568e-01	ci left: 9.542880e-05	ci right 1.143191e-04	k: 482	n:4610000
Cons ci ratio: 2.124874e-02	ci left: 7.250543e-03	ci right 7.406476e-03	k: 33783	n:4610000
KS ci ratio: 1.378078e-01	ci left: 1.633937e-04	ci right 1.877837e-04	k: 808	n:4610000
HS6ST1   4610000 perm   8720 sec   (529 perm/sec)   p_kst 1.752711e-04   p_cons 7.328200e-03   p_joint 1.045553e-04

Joint ci ratio: 1.781725e-01	ci left: 9.542904e-05	ci right 1.142978e-04	k: 483	n:4620000
Cons ci ratio: 2.122235e-02	ci left: 7.252935e-03	ci right 7.408722e-03	k: 33867	n:4620000
KS ci ratio: 1.377227e-01	ci left: 1.632490e-04	ci right 1.876011e-04	k: 809	n:4620000
HS6ST1   4620000 perm   8757 sec   (528 perm/sec)   p_kst 1.751082e-04   p_cons 7.330519e-03   p_joint 1.045455e-04

Joint ci ratio: 1.779887e-01	ci left: 9.542928e-05	ci right 1.142765e-04	k: 484	n:4630000
Cons ci ratio: 2.119858e-02	ci left: 7.253598e-03	ci right 7.409223e-03	k: 33943	n:4630000
KS ci ratio: 1.376377e-01	ci left: 1.631050e-04	ci right 1.874194e-04	k: 810	n:4630000
HS6ST1   4630000 perm   8793 sec   (527 perm/sec)   p_kst 1.749460e-04   p_cons 7.331102e-03   p_joint 1.045356e-04

Joint ci ratio: 1.778055e-01	ci left: 9.542954e-05	ci right 1.142554e-04	k: 485	n:4640000
Cons ci ratio: 2.117582e-02	ci left: 7.253614e-03	ci right 7.409071e-03	k: 34016	n:4640000
KS ci ratio: 1.375530e-01	ci left: 1.629615e-04	ci right 1.872384e-04	k: 811	n:4640000
HS6ST1   4640000 perm   8829 sec   (526 perm/sec)   p_kst 1.747845e-04   p_cons 7.331034e-03   p_joint 1.045259e-04

Joint ci ratio: 1.776228e-01	ci left: 9.542980e-05	ci right 1.142343e-04	k: 486	n:4650000
Cons ci ratio: 2.114470e-02	ci left: 7.259407e-03	ci right 7.414756e-03	k: 34116	n:4650000
KS ci ratio: 1.372154e-01	ci left: 1.634417e-04	ci right 1.877255e-04	k: 815	n:4650000
HS6ST1   4650000 perm   8865 sec   (525 perm/sec)   p_kst 1.752688e-04   p_cons 7.336774e-03   p_joint 1.045161e-04

Joint ci ratio: 1.770782e-01	ci left: 9.584022e-05	ci right 1.146614e-04	k: 489	n:4660000
Cons ci ratio: 2.112492e-02	ci left: 7.257490e-03	ci right 7.412651e-03	k: 34180	n:4660000
KS ci ratio: 1.367969e-01	ci left: 1.641272e-04	ci right 1.884323e-04	k: 820	n:4660000
HS6ST1   4660000 perm   8902 sec   (523 perm/sec)   p_kst 1.759657e-04   p_cons 7.334764e-03   p_joint 1.049356e-04

Joint ci ratio: 1.770782e-01	ci left: 9.563499e-05	ci right 1.144159e-04	k: 489	n:4670000
Cons ci ratio: 2.110084e-02	ci left: 7.258564e-03	ci right 7.413569e-03	k: 34258	n:4670000
KS ci ratio: 1.367137e-01	ci left: 1.639825e-04	ci right 1.882503e-04	k: 821	n:4670000
HS6ST1   4670000 perm   8938 sec   (522 perm/sec)   p_kst 1.758030e-04   p_cons 7.335760e-03   p_joint 1.047109e-04

Joint ci ratio: 1.768978e-01	ci left: 9.563485e-05	ci right 1.143946e-04	k: 490	n:4680000
Cons ci ratio: 2.107593e-02	ci left: 7.260270e-03	ci right 7.415126e-03	k: 34339	n:4680000
KS ci ratio: 1.366306e-01	ci left: 1.638385e-04	ci right 1.880690e-04	k: 822	n:4680000
HS6ST1   4680000 perm   8974 sec   (522 perm/sec)   p_kst 1.756410e-04   p_cons 7.337393e-03   p_joint 1.047009e-04

Joint ci ratio: 1.767180e-01	ci left: 9.563472e-05	ci right 1.143733e-04	k: 491	n:4690000
Cons ci ratio: 2.104863e-02	ci left: 7.263667e-03	ci right 7.418392e-03	k: 34428	n:4690000
KS ci ratio: 1.365477e-01	ci left: 1.636951e-04	ci right 1.878885e-04	k: 823	n:4690000
HS6ST1   4690000 perm   9010 sec   (521 perm/sec)   p_kst 1.754797e-04   p_cons 7.340725e-03   p_joint 1.046908e-04

Joint ci ratio: 1.767180e-01	ci left: 9.543124e-05	ci right 1.141300e-04	k: 491	n:4700000
Cons ci ratio: 2.102881e-02	ci left: 7.261969e-03	ci right 7.416511e-03	k: 34493	n:4700000
KS ci ratio: 1.363822e-01	ci left: 1.637578e-04	ci right 1.879288e-04	k: 825	n:4700000
HS6ST1   4700000 perm   9046 sec   (520 perm/sec)   p_kst 1.755319e-04   p_cons 7.338936e-03   p_joint 1.044681e-04

Joint ci ratio: 1.765387e-01	ci left: 9.543156e-05	ci right 1.141093e-04	k: 492	n:4710000
Cons ci ratio: 2.100812e-02	ci left: 7.260912e-03	ci right 7.415278e-03	k: 34561	n:4710000
KS ci ratio: 1.362174e-01	ci left: 1.638203e-04	ci right 1.879689e-04	k: 827	n:4710000
HS6ST1   4710000 perm   9082 sec   (519 perm/sec)   p_kst 1.755839e-04   p_cons 7.337792e-03   p_joint 1.044586e-04

Joint ci ratio: 1.765387e-01	ci left: 9.522937e-05	ci right 1.138676e-04	k: 492	n:4720000
Cons ci ratio: 2.098414e-02	ci left: 7.262179e-03	ci right 7.416393e-03	k: 34640	n:4720000
KS ci ratio: 1.362175e-01	ci left: 1.634732e-04	ci right 1.875707e-04	k: 827	n:4720000
HS6ST1   4720000 perm   9119 sec   (518 perm/sec)   p_kst 1.752119e-04   p_cons 7.338983e-03   p_joint 1.042373e-04

Joint ci ratio: 1.763599e-01	ci left: 9.523012e-05	ci right 1.138476e-04	k: 493	n:4730000
Cons ci ratio: 2.096359e-02	ci left: 7.261126e-03	ci right 7.415165e-03	k: 34708	n:4730000
KS ci ratio: 1.360532e-01	ci left: 1.635360e-04	ci right 1.876113e-04	k: 829	n:4730000
HS6ST1   4730000 perm   9155 sec   (517 perm/sec)   p_kst 1.752643e-04   p_cons 7.337844e-03   p_joint 1.042283e-04

Joint ci ratio: 1.760040e-01	ci left: 9.543255e-05	ci right 1.140479e-04	k: 495	n:4740000
Cons ci ratio: 2.094310e-02	ci left: 7.260078e-03	ci right 7.413942e-03	k: 34776	n:4740000
KS ci ratio: 1.358896e-01	ci left: 1.635986e-04	ci right 1.876518e-04	k: 831	n:4740000
HS6ST1   4740000 perm   9192 sec   (516 perm/sec)   p_kst 1.753165e-04   p_cons 7.336709e-03   p_joint 1.044304e-04

Joint ci ratio: 1.758268e-01	ci left: 9.543290e-05	ci right 1.140276e-04	k: 496	n:4750000
Cons ci ratio: 2.092236e-02	ci left: 7.259244e-03	ci right 7.412937e-03	k: 34845	n:4750000
KS ci ratio: 1.357266e-01	ci left: 1.636610e-04	ci right 1.876921e-04	k: 833	n:4750000
HS6ST1   4750000 perm   9229 sec   (515 perm/sec)   p_kst 1.753684e-04   p_cons 7.335789e-03   p_joint 1.044211e-04

Joint ci ratio: 1.875104e-01	ci left: 8.319992e-05	ci right 1.006111e-04	k: 436	n:4760000
Cons ci ratio: 2.090380e-02	ci left: 7.256950e-03	ci right 7.410457e-03	k: 34907	n:4760000
KS ci ratio: 1.356453e-01	ci left: 1.635201e-04	ci right 1.875150e-04	k: 834	n:4760000
HS6ST1   4760000 perm   9266 sec   (514 perm/sec)   p_kst 1.752101e-04   p_cons 7.333403e-03   p_joint 9.159664e-05

Joint ci ratio: 1.870828e-01	ci left: 8.342512e-05	ci right 1.008391e-04	k: 438	n:4770000
Cons ci ratio: 2.088017e-02	ci left: 7.258212e-03	ci right 7.411569e-03	k: 34986	n:4770000
KS ci ratio: 1.354831e-01	ci left: 1.635823e-04	ci right 1.875554e-04	k: 836	n:4770000
HS6ST1   4770000 perm   9302 sec   (513 perm/sec)   p_kst 1.752621e-04   p_cons 7.334591e-03   p_joint 9.182390e-05

Joint ci ratio: 1.868700e-01	ci left: 8.345001e-05	ci right 1.008471e-04	k: 439	n:4780000
Cons ci ratio: 2.085782e-02	ci left: 7.258636e-03	ci right 7.411836e-03	k: 35061	n:4780000
KS ci ratio: 1.353215e-01	ci left: 1.636444e-04	ci right 1.875956e-04	k: 838	n:4780000
HS6ST1   4780000 perm   9338 sec   (512 perm/sec)   p_kst 1.753138e-04   p_cons 7.334937e-03   p_joint 9.184100e-05

Joint ci ratio: 1.868701e-01	ci left: 8.327579e-05	ci right 1.006366e-04	k: 439	n:4790000
Cons ci ratio: 2.083794e-02	ci left: 7.257397e-03	ci right 7.410423e-03	k: 35128	n:4790000
KS ci ratio: 1.353216e-01	ci left: 1.633027e-04	ci right 1.872040e-04	k: 838	n:4790000
HS6ST1   4790000 perm   9375 sec   (511 perm/sec)   p_kst 1.749478e-04   p_cons 7.333612e-03   p_joint 9.164927e-05

Joint ci ratio: 1.868701e-01	ci left: 8.310230e-05	ci right 1.004269e-04	k: 439	n:4800000
Cons ci ratio: 2.081453e-02	ci left: 7.258650e-03	ci right 7.411529e-03	k: 35207	n:4800000
KS ci ratio: 1.352410e-01	ci left: 1.631638e-04	ci right 1.870293e-04	k: 839	n:4800000
HS6ST1   4800000 perm   9412 sec   (510 perm/sec)   p_kst 1.747917e-04   p_cons 7.334792e-03   p_joint 9.145833e-05

Joint ci ratio: 1.864468e-01	ci left: 8.332590e-05	ci right 1.006533e-04	k: 441	n:4810000
Cons ci ratio: 2.079151e-02	ci left: 7.259691e-03	ci right 7.412421e-03	k: 35285	n:4810000
KS ci ratio: 1.350803e-01	ci left: 1.632263e-04	ci right 1.870704e-04	k: 841	n:4810000
HS6ST1   4810000 perm   9449 sec   (509 perm/sec)   p_kst 1.748441e-04   p_cons 7.335759e-03   p_joint 9.168399e-05

Joint ci ratio: 1.864468e-01	ci left: 8.315302e-05	ci right 1.004445e-04	k: 441	n:4820000
Cons ci ratio: 2.077122e-02	ci left: 7.258870e-03	ci right 7.411432e-03	k: 35354	n:4820000
KS ci ratio: 1.350002e-01	ci left: 1.630881e-04	ci right 1.868967e-04	k: 842	n:4820000
HS6ST1   4820000 perm   9486 sec   (508 perm/sec)   p_kst 1.746888e-04   p_cons 7.334855e-03   p_joint 9.149378e-05

Joint ci ratio: 1.864468e-01	ci left: 8.298086e-05	ci right 1.002366e-04	k: 441	n:4830000
Cons ci ratio: 2.075069e-02	ci left: 7.258259e-03	ci right 7.410655e-03	k: 35424	n:4830000
KS ci ratio: 1.350002e-01	ci left: 1.627505e-04	ci right 1.865098e-04	k: 842	n:4830000
HS6ST1   4830000 perm   9524 sec   (507 perm/sec)   p_kst 1.743271e-04   p_cons 7.334161e-03   p_joint 9.130435e-05

Joint ci ratio: 1.864469e-01	ci left: 8.280941e-05	ci right 1.000295e-04	k: 441	n:4840000
Cons ci ratio: 2.072964e-02	ci left: 7.258062e-03	ci right 7.410297e-03	k: 35496	n:4840000
KS ci ratio: 1.348403e-01	ci left: 1.628135e-04	ci right 1.865516e-04	k: 844	n:4840000
HS6ST1   4840000 perm   9561 sec   (506 perm/sec)   p_kst 1.743802e-04   p_cons 7.333884e-03   p_joint 9.111570e-05

Joint ci ratio: 1.862363e-01	ci left: 8.283524e-05	ci right 1.000390e-04	k: 442	n:4850000
Cons ci ratio: 2.070513e-02	ci left: 7.260327e-03	ci right 7.412427e-03	k: 35580	n:4850000
KS ci ratio: 1.347606e-01	ci left: 1.626770e-04	ci right 1.863801e-04	k: 845	n:4850000
HS6ST1   4850000 perm   9598 sec   (505 perm/sec)   p_kst 1.742268e-04   p_cons 7.336082e-03   p_joint 9.113402e-05

Joint ci ratio: 1.860264e-01	ci left: 8.286097e-05	ci right 1.000485e-04	k: 443	n:4860000
Cons ci ratio: 2.068510e-02	ci left: 7.259512e-03	ci right 7.411446e-03	k: 35649	n:4860000
KS ci ratio: 1.345223e-01	ci left: 1.629388e-04	ci right 1.866346e-04	k: 848	n:4860000
HS6ST1   4860000 perm   9635 sec   (504 perm/sec)   p_kst 1.744856e-04   p_cons 7.335185e-03   p_joint 9.115226e-05

Joint ci ratio: 1.860265e-01	ci left: 8.269083e-05	ci right 9.984306e-05	k: 443	n:4870000
Cons ci ratio: 2.066482e-02	ci left: 7.258905e-03	ci right 7.410676e-03	k: 35719	n:4870000
KS ci ratio: 1.344431e-01	ci left: 1.628026e-04	ci right 1.864636e-04	k: 849	n:4870000
HS6ST1   4870000 perm   9673 sec   (503 perm/sec)   p_kst 1.743326e-04   p_cons 7.334497e-03   p_joint 9.096509e-05

Joint ci ratio: 1.860265e-01	ci left: 8.252138e-05	ci right 9.963846e-05	k: 443	n:4880000
Cons ci ratio: 2.064345e-02	ci left: 7.259115e-03	ci right 7.410732e-03	k: 35793	n:4880000
KS ci ratio: 1.343641e-01	ci left: 1.626670e-04	ci right 1.862934e-04	k: 850	n:4880000
HS6ST1   4880000 perm   9710 sec   (503 perm/sec)   p_kst 1.741803e-04   p_cons 7.334631e-03   p_joint 9.077869e-05

Joint ci ratio: 1.858173e-01	ci left: 8.254760e-05	ci right 9.964871e-05	k: 444	n:4890000
Cons ci ratio: 2.061954e-02	ci left: 7.261156e-03	ci right 7.412638e-03	k: 35876	n:4890000
KS ci ratio: 1.342065e-01	ci left: 1.627297e-04	ci right 1.863351e-04	k: 852	n:4890000
HS6ST1   4890000 perm   9748 sec   (502 perm/sec)   p_kst 1.742331e-04   p_cons 7.336605e-03   p_joint 9.079755e-05

Joint ci ratio: 1.854012e-01	ci left: 8.276834e-05	ci right 9.987245e-05	k: 446	n:4900000
Cons ci ratio: 2.060090e-02	ci left: 7.259535e-03	ci right 7.410844e-03	k: 35941	n:4900000
KS ci ratio: 1.340495e-01	ci left: 1.627920e-04	ci right 1.863767e-04	k: 854	n:4900000
HS6ST1   4900000 perm   9786 sec   (501 perm/sec)   p_kst 1.742857e-04   p_cons 7.334898e-03   p_joint 9.102041e-05

Joint ci ratio: 1.854012e-01	ci left: 8.259977e-05	ci right 9.966904e-05	k: 446	n:4910000
Cons ci ratio: 2.057800e-02	ci left: 7.260959e-03	ci right 7.412128e-03	k: 36021	n:4910000
KS ci ratio: 1.339711e-01	ci left: 1.626573e-04	ci right 1.862076e-04	k: 855	n:4910000
HS6ST1   4910000 perm   9824 sec   (500 perm/sec)   p_kst 1.741344e-04   p_cons 7.336253e-03   p_joint 9.083503e-05

Joint ci ratio: 1.849878e-01	ci left: 8.281954e-05	ci right 9.989179e-05	k: 448	n:4920000
Cons ci ratio: 2.055804e-02	ci left: 7.260355e-03	ci right 7.411364e-03	k: 36091	n:4920000
KS ci ratio: 1.337370e-01	ci left: 1.629160e-04	ci right 1.864593e-04	k: 858	n:4920000
HS6ST1   4920000 perm   9862 sec   (499 perm/sec)   p_kst 1.743902e-04   p_cons 7.335569e-03   p_joint 9.105691e-05

Joint ci ratio: 1.843728e-01	ci left: 8.323194e-05	ci right 1.003258e-04	k: 451	n:4930000
Cons ci ratio: 2.054129e-02	ci left: 7.257534e-03	ci right 7.408359e-03	k: 36150	n:4930000
KS ci ratio: 1.334267e-01	ci left: 1.633698e-04	ci right 1.869195e-04	k: 862	n:4930000
HS6ST1   4930000 perm   9900 sec   (498 perm/sec)   p_kst 1.748479e-04   p_cons 7.332657e-03   p_joint 9.148073e-05

Joint ci ratio: 1.843728e-01	ci left: 8.306345e-05	ci right 1.001227e-04	k: 451	n:4940000
Cons ci ratio: 2.052201e-02	ci left: 7.256538e-03	ci right 7.407199e-03	k: 36218	n:4940000
KS ci ratio: 1.334267e-01	ci left: 1.630391e-04	ci right 1.865411e-04	k: 862	n:4940000
HS6ST1   4940000 perm   9937 sec   (497 perm/sec)   p_kst 1.744939e-04   p_cons 7.331579e-03   p_joint 9.129555e-05

Joint ci ratio: 1.843729e-01	ci left: 8.289565e-05	ci right 9.992043e-05	k: 451	n:4950000
Cons ci ratio: 2.050107e-02	ci left: 7.256751e-03	ci right 7.407261e-03	k: 36292	n:4950000
KS ci ratio: 1.332723e-01	ci left: 1.631003e-04	ci right 1.865818e-04	k: 864	n:4950000
HS6ST1   4950000 perm   9975 sec   (496 perm/sec)   p_kst 1.745455e-04   p_cons 7.331717e-03   p_joint 9.111111e-05

Joint ci ratio: 1.841692e-01	ci left: 8.292083e-05	ci right 9.992988e-05	k: 452	n:4960000
Cons ci ratio: 2.047623e-02	ci left: 7.259771e-03	ci right 7.410159e-03	k: 36380	n:4960000
KS ci ratio: 1.331954e-01	ci left: 1.629664e-04	ci right 1.864140e-04	k: 865	n:4960000
HS6ST1   4960000 perm   10013 sec   (495 perm/sec)   p_kst 1.743952e-04   p_cons 7.334677e-03   p_joint 9.112903e-05

Joint ci ratio: 1.841693e-01	ci left: 8.275399e-05	ci right 9.972882e-05	k: 452	n:4970000
Cons ci ratio: 2.045601e-02	ci left: 7.259577e-03	ci right 7.409811e-03	k: 36452	n:4970000
KS ci ratio: 1.330418e-01	ci left: 1.630275e-04	ci right 1.864547e-04	k: 867	n:4970000
HS6ST1   4970000 perm   10051 sec   (494 perm/sec)   p_kst 1.744467e-04   p_cons 7.334406e-03   p_joint 9.094567e-05

Joint ci ratio: 1.837640e-01	ci left: 8.297093e-05	ci right 9.994864e-05	k: 454	n:4980000
Cons ci ratio: 2.043527e-02	ci left: 7.259783e-03	ci right 7.409867e-03	k: 36526	n:4980000
KS ci ratio: 1.327363e-01	ci left: 1.634766e-04	ci right 1.869102e-04	k: 871	n:4980000
HS6ST1   4980000 perm   10089 sec   (494 perm/sec)   p_kst 1.748996e-04   p_cons 7.334538e-03   p_joint 9.116466e-05

Joint ci ratio: 1.833615e-01	ci left: 8.318704e-05	ci right 1.001675e-04	k: 456	n:4990000
Cons ci ratio: 2.041404e-02	ci left: 7.260387e-03	ci right 7.410326e-03	k: 36602	n:4990000
KS ci ratio: 1.325844e-01	ci left: 1.635365e-04	ci right 1.869497e-04	k: 873	n:4990000
HS6ST1   4990000 perm   10127 sec   (493 perm/sec)   p_kst 1.749499e-04   p_cons 7.335070e-03   p_joint 9.138277e-05

Joint ci ratio: 2.368093e-01	ci left: 4.831482e-05	ci right 6.147573e-05	k: 273	n:5000000
Cons ci ratio: 2.295775e-02	ci left: 5.730643e-03	ci right 5.863930e-03	k: 28985	n:5000000
KS ci ratio: 1.324329e-01	ci left: 1.635962e-04	ci right 1.869891e-04	k: 875	n:5000000
HS6ST1   5000000 perm   10165 sec   (492 perm/sec)   p_kst 1.750000e-04   p_cons 5.797000e-03   p_joint 5.460000e-05

Outputting figure to mutsig2_images.part000000000081/HS6ST1.5_1244_5000000_0.000175_0.005797_5.46e-05.png
                gene_name: HS6ST1
               theta_stop: 0.24 
                    nperm: 5000000 
                     p_ks: 0.00017 
        ci_ks_bounds_left: 0.00016 
       ci_ks_bounds_right: 0.00019 
                   p_cons: 0.0058 
      ci_cons_bounds_left: 0.0057 
     ci_cons_bounds_right: 0.0059 
                  p_joint: 5.46e-05 
     ci_joint_bounds_left: 4.83e-05 
    ci_joint_bounds_right: 6.15e-05 

Current progress: 5 percent done.
HSD3B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.809519e-03	ci left: 9.476267e-01	ci right 9.561076e-01	k: 9520	n:10000
Cons ci ratio: 3.925687e-02	ci left: 4.893516e-01	ci right 5.090488e-01	k: 4992	n:10000
KS ci ratio: 2.051534e-02	ci left: 7.768156e-01	ci right 7.930181e-01	k: 7850	n:10000
HSD3B1   10000 perm   2 sec   (5501 perm/sec)   p_kst 7.850000e-01   p_cons 4.992000e-01   p_joint 9.520000e-01

Outputting figure to mutsig2_images.part000000000081/HSD3B1.5_1134_10000_0.785_0.4992_0.952.png
                gene_name: HSD3B1
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 8 percent done.
HSPA12A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.255920e-02	ci left: 4.490965e-01	ci right 4.687274e-01	k: 4589	n:10000
Cons ci ratio: 2.970424e-02	ci left: 6.256770e-01	ci right 6.446442e-01	k: 6352	n:10000
KS ci ratio: 6.712558e-02	ci left: 2.456887e-01	ci right 2.628547e-01	k: 2542	n:10000
HSPA12A   10000 perm   2 sec   (5333 perm/sec)   p_kst 2.542000e-01   p_cons 6.352000e-01   p_joint 4.589000e-01

Outputting figure to mutsig2_images.part000000000081/HSPA12A.5_2076_10000_0.2542_0.6352_0.4589.png
                gene_name: HSPA12A
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 11 percent done.
HRAS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.576830e-01	ci left: 5.359424e-02	ci right 6.286520e-02	k: 581	n:10000
Cons ci ratio: 1.769032e-01	ci left: 4.264711e-02	ci right 5.101943e-02	k: 467	n:10000
KS ci ratio: 1.950999e-01	ci left: 3.500453e-02	ci right 4.266711e-02	k: 387	n:10000
HRAS   10000 perm   2 sec   (6400 perm/sec)   p_kst 3.870000e-02   p_cons 4.670000e-02   p_joint 5.810000e-02

Joint ci ratio: 1.200634e-01	ci left: 4.755432e-02	ci right 5.367717e-02	k: 1011	n:20000
Cons ci ratio: 1.253735e-01	ci left: 4.367138e-02	ci right 4.956134e-02	k: 931	n:20000
KS ci ratio: 1.332089e-01	ci left: 3.872934e-02	ci right 4.430495e-02	k: 829	n:20000
HRAS   20000 perm   3 sec   (5783 perm/sec)   p_kst 4.145000e-02   p_cons 4.655000e-02   p_joint 5.055000e-02

Joint ci ratio: 1.026376e-01	ci left: 4.398204e-02	ci right 4.877297e-02	k: 1390	n:30000
Cons ci ratio: 1.025990e-01	ci left: 4.401455e-02	ci right 4.880712e-02	k: 1391	n:30000
KS ci ratio: 1.096878e-01	ci left: 3.858932e-02	ci right 4.310015e-02	k: 1224	n:30000
HRAS   30000 perm   6 sec   (5321 perm/sec)   p_kst 4.080000e-02   p_cons 4.636667e-02   p_joint 4.633333e-02

Joint ci ratio: 9.018656e-02	ci left: 4.306243e-02	ci right 4.715394e-02	k: 1803	n:40000
Cons ci ratio: 8.825691e-02	ci left: 4.492195e-02	ci right 4.909413e-02	k: 1879	n:40000
KS ci ratio: 9.458102e-02	ci left: 3.922427e-02	ci right 4.314270e-02	k: 1646	n:40000
HRAS   40000 perm   8 sec   (5216 perm/sec)   p_kst 4.115000e-02   p_cons 4.697500e-02   p_joint 4.507500e-02

Outputting figure to mutsig2_images.part000000000081/HRAS.4_653_40000_0.04115_0.046975_0.045075.png
                gene_name: HRAS
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.041 
        ci_ks_bounds_left: 0.039 
       ci_ks_bounds_right: 0.043 
                   p_cons: 0.047 
      ci_cons_bounds_left: 0.045 
     ci_cons_bounds_right: 0.049 
                  p_joint: 0.045 
     ci_joint_bounds_left: 0.043 
    ci_joint_bounds_right: 0.047 

Current progress: 13 percent done.
HRH4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.983582e-02	ci left: 2.912258e-01	ci right 3.092906e-01	k: 3002	n:10000
Cons ci ratio: 9.675168e-02	ci left: 1.341362e-01	ci right 1.478736e-01	k: 1409	n:10000
KS ci ratio: 3.796719e-02	ci left: 5.060517e-01	ci right 5.257390e-01	k: 5159	n:10000
HRH4   10000 perm   2 sec   (5479 perm/sec)   p_kst 5.159000e-01   p_cons 1.409000e-01   p_joint 3.002000e-01

Outputting figure to mutsig2_images.part000000000081/HRH4.4_1185_10000_0.5159_0.1409_0.3002.png
                gene_name: HRH4
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 16 percent done.
HS3ST4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.108706e-01	ci left: 2.986994e-02	ci right 3.700523e-02	k: 333	n:10000
Cons ci ratio: 2.322340e-01	ci left: 2.447729e-02	ci right 3.100172e-02	k: 276	n:10000
KS ci ratio: 1.211965e-01	ci left: 8.893260e-02	ci right 1.005047e-01	k: 946	n:10000
HS3ST4   10000 perm   2 sec   (5703 perm/sec)   p_kst 9.460000e-02   p_cons 2.760000e-02   p_joint 3.330000e-02

Joint ci ratio: 7.470763e-02	ci left: 1.164613e-01	ci right 1.255492e-01	k: 2419	n:20000
Cons ci ratio: 1.643708e-01	ci left: 2.537344e-02	ci right 2.996526e-02	k: 552	n:20000
KS ci ratio: 8.702652e-02	ci left: 8.807791e-02	ci right 9.614113e-02	k: 1841	n:20000
HS3ST4   20000 perm   4 sec   (5003 perm/sec)   p_kst 9.205000e-02   p_cons 2.760000e-02   p_joint 1.209500e-01

Joint ci ratio: 7.340788e-02	ci left: 8.360479e-02	ci right 9.000883e-02	k: 2603	n:30000
Cons ci ratio: 1.352610e-01	ci left: 2.538853e-02	ci right 2.910379e-02	k: 816	n:30000
KS ci ratio: 7.048281e-02	ci left: 9.016279e-02	ci right 9.678284e-02	k: 2803	n:30000
HS3ST4   30000 perm   6 sec   (4902 perm/sec)   p_kst 9.343333e-02   p_cons 2.720000e-02   p_joint 8.676667e-02

Joint ci ratio: 6.628619e-02	ci left: 7.772872e-02	ci right 8.308238e-02	k: 3215	n:40000
Cons ci ratio: 1.156923e-01	ci left: 2.628365e-02	ci right 2.953537e-02	k: 1115	n:40000
KS ci ratio: 6.079526e-02	ci left: 9.128046e-02	ci right 9.702861e-02	k: 3765	n:40000
HS3ST4   40000 perm   8 sec   (4811 perm/sec)   p_kst 9.412500e-02   p_cons 2.787500e-02   p_joint 8.037500e-02

Joint ci ratio: 6.819893e-02	ci left: 5.986233e-02	ci right 6.410870e-02	k: 3098	n:50000
Cons ci ratio: 1.032504e-01	ci left: 2.657143e-02	ci right 2.948371e-02	k: 1400	n:50000
KS ci ratio: 5.525942e-02	ci left: 8.890758e-02	ci right 9.397996e-02	k: 4571	n:50000
HS3ST4   50000 perm   11 sec   (4726 perm/sec)   p_kst 9.142000e-02   p_cons 2.800000e-02   p_joint 6.196000e-02

Joint ci ratio: 6.514222e-02	ci left: 5.505957e-02	ci right 5.878343e-02	k: 3414	n:60000
Cons ci ratio: 9.357514e-02	ci left: 2.708536e-02	ci right 2.976051e-02	k: 1704	n:60000
KS ci ratio: 5.033077e-02	ci left: 8.950106e-02	ci right 9.413851e-02	k: 5508	n:60000
HS3ST4   60000 perm   13 sec   (4644 perm/sec)   p_kst 9.180000e-02   p_cons 2.840000e-02   p_joint 5.690000e-02

Outputting figure to mutsig2_images.part000000000081/HS3ST4.4_1379_60000_0.0918_0.0284_0.0569.png
                gene_name: HS3ST4
               theta_stop: 0.094 
                    nperm: 60000 
                     p_ks: 0.092 
        ci_ks_bounds_left: 0.090 
       ci_ks_bounds_right: 0.094 
                   p_cons: 0.028 
      ci_cons_bounds_left: 0.027 
     ci_cons_bounds_right: 0.030 
                  p_joint: 0.057 
     ci_joint_bounds_left: 0.055 
    ci_joint_bounds_right: 0.059 

Current progress: 18 percent done.
HS3ST5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.836104e-02	ci left: 8.124288e-01	ci right 8.275843e-01	k: 8201	n:10000
Cons ci ratio: 5.054278e-02	ci left: 3.659962e-01	ci right 3.850763e-01	k: 3755	n:10000
KS ci ratio: 5.598589e-03	ci left: 9.771688e-01	ci right 9.827467e-01	k: 9801	n:10000
HS3ST5   10000 perm   1 sec   (6751 perm/sec)   p_kst 9.801000e-01   p_cons 3.755000e-01   p_joint 8.201000e-01

Outputting figure to mutsig2_images.part000000000081/HS3ST5.4_1049_10000_0.9801_0.3755_0.8201.png
                gene_name: HS3ST5
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 21 percent done.
HSPA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.104297e-01	ci left: 1.056875e-01	ci right 1.181396e-01	k: 1118	n:10000
Cons ci ratio: 2.417799e-02	ci left: 7.155281e-01	ci right 7.331411e-01	k: 7244	n:10000
KS ci ratio: 1.243397e-01	ci left: 8.475243e-02	ci right 9.608748e-02	k: 903	n:10000
HSPA5   10000 perm   2 sec   (5682 perm/sec)   p_kst 9.030000e-02   p_cons 7.244000e-01   p_joint 1.118000e-01

Joint ci ratio: 7.121812e-02	ci left: 1.268452e-01	ci right 1.362622e-01	k: 2630	n:20000
Cons ci ratio: 1.726593e-02	ci left: 7.141736e-01	ci right 7.266622e-01	k: 14409	n:20000
KS ci ratio: 8.805710e-02	ci left: 8.616660e-02	ci right 9.415302e-02	k: 1802	n:20000
HSPA5   20000 perm   4 sec   (5228 perm/sec)   p_kst 9.010000e-02   p_cons 7.204500e-01   p_joint 1.315000e-01

Outputting figure to mutsig2_images.part000000000081/HSPA5.4_1997_20000_0.0901_0.72045_0.1315.png
                gene_name: HSPA5
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.090 
        ci_ks_bounds_left: 0.086 
       ci_ks_bounds_right: 0.094 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 24 percent done.
HPS4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.479914e-02	ci left: 5.494030e-01	ci right 5.689625e-01	k: 5592	n:10000
Cons ci ratio: 8.429399e-02	ci left: 1.702525e-01	ci right 1.853357e-01	k: 1777	n:10000
KS ci ratio: 1.813050e-02	ci left: 8.161888e-01	ci right 8.312222e-01	k: 8238	n:10000
HPS4   10000 perm   2 sec   (6221 perm/sec)   p_kst 8.238000e-01   p_cons 1.777000e-01   p_joint 5.592000e-01

Outputting figure to mutsig2_images.part000000000081/HPS4.3_2205_10000_0.8238_0.1777_0.5592.png
                gene_name: HPS4
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 26 percent done.
HPS5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.305884e-02	ci left: 3.436272e-01	ci right 3.624585e-01	k: 3530	n:10000
Cons ci ratio: 1.074258e-01	ci left: 1.111530e-01	ci right 1.238707e-01	k: 1174	n:10000
KS ci ratio: 2.593006e-02	ci left: 6.864752e-01	ci right 7.046108e-01	k: 6956	n:10000
HPS5   10000 perm   2 sec   (5496 perm/sec)   p_kst 6.956000e-01   p_cons 1.174000e-01   p_joint 3.530000e-01

Joint ci ratio: 3.531606e-02	ci left: 3.744118e-01	ci right 3.879228e-01	k: 7623	n:20000
Cons ci ratio: 7.614660e-02	ci left: 1.125272e-01	ci right 1.214845e-01	k: 2339	n:20000
KS ci ratio: 1.826878e-02	ci left: 6.907286e-01	ci right 7.035141e-01	k: 13943	n:20000
HPS5   20000 perm   4 sec   (5030 perm/sec)   p_kst 6.971500e-01   p_cons 1.169500e-01   p_joint 3.811500e-01

Outputting figure to mutsig2_images.part000000000081/HPS5.3_3478_20000_0.69715_0.11695_0.38115.png
                gene_name: HPS5
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 29 percent done.
HPSE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.804081e-02	ci left: 3.899802e-01	ci right 4.092783e-01	k: 3996	n:10000
Cons ci ratio: 4.633221e-02	ci left: 4.074111e-01	ci right 4.268372e-01	k: 4171	n:10000
KS ci ratio: 6.301540e-02	ci left: 2.701258e-01	ci right 2.878031e-01	k: 2789	n:10000
HPSE   10000 perm   2 sec   (5370 perm/sec)   p_kst 2.789000e-01   p_cons 4.171000e-01   p_joint 3.996000e-01

Outputting figure to mutsig2_images.part000000000081/HPSE.3_1680_10000_0.2789_0.4171_0.3996.png
                gene_name: HPSE
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 32 percent done.
HR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.094156e-02	ci left: 4.683670e-01	ci right 4.880457e-01	k: 4782	n:10000
Cons ci ratio: 2.559995e-02	ci left: 6.919193e-01	ci right 7.099635e-01	k: 7010	n:10000
KS ci ratio: 6.853489e-02	ci left: 2.379790e-01	ci right 2.549689e-01	k: 2464	n:10000
HR   10000 perm   2 sec   (5466 perm/sec)   p_kst 2.464000e-01   p_cons 7.010000e-01   p_joint 4.782000e-01

Outputting figure to mutsig2_images.part000000000081/HR.3_3642_10000_0.2464_0.701_0.4782.png
                gene_name: HR
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 34 percent done.
HRC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.863654e-02	ci left: 3.841063e-01	ci right 4.033556e-01	k: 3937	n:10000
Cons ci ratio: 9.121080e-02	ci left: 1.487429e-01	ci right 1.630582e-01	k: 1558	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
HRC   10000 perm   2 sec   (5911 perm/sec)   p_kst 1   p_cons 1.558000e-01   p_joint 3.937000e-01

Outputting figure to mutsig2_images.part000000000081/HRC.3_2124_10000_1_0.1558_0.3937.png
                gene_name: HRC
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 37 percent done.
HRH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.661901e-01	ci left: 4.830553e-02	ci right 5.715732e-02	k: 526	n:10000
Cons ci ratio: 2.601440e-01	ci left: 1.930852e-02	ci right 2.517438e-02	k: 221	n:10000
KS ci ratio: 2.263175e-02	ci left: 7.413911e-01	ci right 7.584631e-01	k: 7500	n:10000
HRH1   10000 perm   2 sec   (6177 perm/sec)   p_kst 7.500000e-01   p_cons 2.210000e-02   p_joint 5.260000e-02

Joint ci ratio: 8.114045e-02	ci left: 1.002440e-01	ci right 1.087714e-01	k: 2089	n:20000
Cons ci ratio: 1.794582e-01	ci left: 2.120602e-02	ci right 2.543413e-02	k: 465	n:20000
KS ci ratio: 1.616961e-02	ci left: 7.400075e-01	ci right 7.521209e-01	k: 14922	n:20000
HRH1   20000 perm   4 sec   (5668 perm/sec)   p_kst 7.461000e-01   p_cons 2.325000e-02   p_joint 1.044500e-01

Joint ci ratio: 6.960991e-02	ci left: 9.226246e-02	ci right 9.894943e-02	k: 2867	n:30000
Cons ci ratio: 1.424101e-01	ci left: 2.287663e-02	ci right 2.641625e-02	k: 738	n:30000
KS ci ratio: 1.327333e-02	ci left: 7.390885e-01	ci right 7.489976e-01	k: 22322	n:30000
HRH1   30000 perm   6 sec   (5446 perm/sec)   p_kst 7.440667e-01   p_cons 2.460000e-02   p_joint 9.556667e-02

Joint ci ratio: 6.729248e-02	ci left: 7.556246e-02	ci right 8.084897e-02	k: 3127	n:40000
Cons ci ratio: 1.238044e-01	ci left: 2.293435e-02	ci right 2.598522e-02	k: 977	n:40000
KS ci ratio: 1.144879e-02	ci left: 7.413017e-01	ci right 7.498626e-01	k: 29824	n:40000
HRH1   40000 perm   8 sec   (5126 perm/sec)   p_kst 7.456000e-01   p_cons 2.442500e-02   p_joint 7.817500e-02

Joint ci ratio: 6.280537e-02	ci left: 7.000541e-02	ci right 7.456440e-02	k: 3613	n:50000
Cons ci ratio: 1.101127e-01	ci left: 2.335720e-02	ci right 2.609836e-02	k: 1235	n:50000
KS ci ratio: 1.023688e-02	ci left: 7.418789e-01	ci right 7.495325e-01	k: 37286	n:50000
HRH1   50000 perm   10 sec   (5026 perm/sec)   p_kst 7.457200e-01   p_cons 2.470000e-02   p_joint 7.226000e-02

Joint ci ratio: 6.194496e-02	ci left: 6.062528e-02	ci right 6.451717e-02	k: 3753	n:60000
Cons ci ratio: 9.966773e-02	ci left: 2.387927e-02	ci right 2.640028e-02	k: 1507	n:60000
KS ci ratio: 9.381176e-03	ci left: 7.407390e-01	ci right 7.477374e-01	k: 44655	n:60000
HRH1   60000 perm   12 sec   (4928 perm/sec)   p_kst 7.442500e-01   p_cons 2.511667e-02   p_joint 6.255000e-02

Outputting figure to mutsig2_images.part000000000081/HRH1.3_1468_60000_0.74425_0.025117_0.06255.png
                gene_name: HRH1
               theta_stop: 0.100 
                    nperm: 60000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.025 
      ci_cons_bounds_left: 0.024 
     ci_cons_bounds_right: 0.026 
                  p_joint: 0.063 
     ci_joint_bounds_left: 0.061 
    ci_joint_bounds_right: 0.065 

Current progress: 39 percent done.
HS6ST3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.286200e-02	ci left: 3.453165e-01	ci right 3.641682e-01	k: 3547	n:10000
Cons ci ratio: 1.016190e-02	ci left: 9.321629e-01	ci right 9.417806e-01	k: 9371	n:10000
KS ci ratio: 7.961909e-02	ci left: 1.872743e-01	ci right 2.029038e-01	k: 1950	n:10000
HS6ST3   10000 perm   2 sec   (6372 perm/sec)   p_kst 1.950000e-01   p_cons 9.371000e-01   p_joint 3.547000e-01

Outputting figure to mutsig2_images.part000000000081/HS6ST3.3_1424_10000_0.195_0.9371_0.3547.png
                gene_name: HS6ST3
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 42 percent done.
HSD11B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.530722e-02	ci left: 6.967598e-01	ci right 7.147202e-01	k: 7058	n:10000
KS ci ratio: 2.800172e-02	ci left: 6.527333e-01	ci right 6.713722e-01	k: 6621	n:10000
HSD11B1   10000 perm   1 sec   (6818 perm/sec)   p_kst 6.621000e-01   p_cons 7.058000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000081/HSD11B1.3_903_10000_0.6621_0.7058_1.png
                gene_name: HSD11B1
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 45 percent done.
HSD3B2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.289569e-02	ci left: 8.964156e-01	ci right 9.081488e-01	k: 9024	n:10000
Cons ci ratio: 1.719903e-02	ci left: 8.312409e-01	ci right 8.457613e-01	k: 8386	n:10000
KS ci ratio: 4.522581e-02	ci left: 4.191717e-01	ci right 4.386698e-01	k: 4289	n:10000
HSD3B2   10000 perm   1 sec   (6709 perm/sec)   p_kst 4.289000e-01   p_cons 8.386000e-01   p_joint 9.024000e-01

Outputting figure to mutsig2_images.part000000000081/HSD3B2.3_1131_10000_0.4289_0.8386_0.9024.png
                gene_name: HSD3B2
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 47 percent done.
HSP90AA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.215513e-01	ci left: 8.844634e-02	ci right 9.999129e-02	k: 941	n:10000
Cons ci ratio: 8.971858e-03	ci left: 9.458575e-01	ci right 9.544778e-01	k: 9503	n:10000
KS ci ratio: 1.456935e-01	ci left: 6.256264e-02	ci right 7.249110e-02	k: 674	n:10000
HSP90AA1   10000 perm   2 sec   (6007 perm/sec)   p_kst 6.740000e-02   p_cons 9.503000e-01   p_joint 9.410000e-02

Joint ci ratio: 9.317593e-02	ci left: 7.749952e-02	ci right 8.512273e-02	k: 1625	n:20000
Cons ci ratio: 6.431553e-03	ci left: 9.458087e-01	ci right 9.519599e-01	k: 18979	n:20000
KS ci ratio: 1.035173e-01	ci left: 6.342669e-02	ci right 7.039986e-02	k: 1337	n:20000
HSP90AA1   20000 perm   4 sec   (5373 perm/sec)   p_kst 6.685000e-02   p_cons 9.489500e-01   p_joint 8.125000e-02

Joint ci ratio: 7.442972e-02	ci left: 8.147463e-02	ci right 8.780608e-02	k: 2538	n:30000
Cons ci ratio: 5.140516e-03	ci left: 9.484625e-01	ci right 9.533831e-01	k: 28529	n:30000
KS ci ratio: 8.548467e-02	ci left: 6.269323e-02	ci right 6.832461e-02	k: 1964	n:30000
HSP90AA1   30000 perm   6 sec   (5135 perm/sec)   p_kst 6.546667e-02   p_cons 9.509667e-01   p_joint 8.460000e-02

Outputting figure to mutsig2_images.part000000000081/HSP90AA1.3_2613_30000_0.065467_0.95097_0.0846.png
                gene_name: HSP90AA1
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.065 
        ci_ks_bounds_left: 0.063 
       ci_ks_bounds_right: 0.068 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.085 
     ci_joint_bounds_left: 0.081 
    ci_joint_bounds_right: 0.088 

Current progress: 50 percent done.
HSP90AB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.652915e-02	ci left: 2.490504e-01	ci right 2.662910e-01	k: 2576	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
HSP90AB1   10000 perm   2 sec   (5329 perm/sec)   p_kst 1   p_cons 2.576000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000081/HSP90AB1.3_2219_10000_1_0.2576_1.png
                gene_name: HSP90AB1
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 53 percent done.
HSP90B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.341629e-02	ci left: 7.282528e-01	ci right 7.456090e-01	k: 7370	n:10000
KS ci ratio: 1.975980e-02	ci left: 7.893861e-01	ci right 8.052403e-01	k: 7974	n:10000
HSP90B1   10000 perm   2 sec   (6358 perm/sec)   p_kst 7.974000e-01   p_cons 7.370000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000081/HSP90B1.3_2484_10000_0.7974_0.737_1.png
                gene_name: HSP90B1
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 55 percent done.
HSPA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.493380e-02	ci left: 3.280320e-01	ci right 3.466628e-01	k: 3373	n:10000
Cons ci ratio: 6.737426e-02	ci left: 2.443046e-01	ci right 2.614396e-01	k: 2528	n:10000
KS ci ratio: 5.699905e-02	ci left: 3.118529e-01	ci right 3.302514e-01	k: 3210	n:10000
HSPA2   10000 perm   2 sec   (6278 perm/sec)   p_kst 3.210000e-01   p_cons 2.528000e-01   p_joint 3.373000e-01

Outputting figure to mutsig2_images.part000000000081/HSPA2.3_1924_10000_0.321_0.2528_0.3373.png
                gene_name: HSPA2
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 58 percent done.
HSPA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.085669e-02	ci left: 3.631119e-01	ci right 3.821624e-01	k: 3726	n:10000
Cons ci ratio: 3.733377e-02	ci left: 5.144559e-01	ci right 5.341300e-01	k: 5243	n:10000
KS ci ratio: 5.536657e-02	ci left: 3.245569e-01	ci right 3.431400e-01	k: 3338	n:10000
HSPA4   10000 perm   2 sec   (5244 perm/sec)   p_kst 3.338000e-01   p_cons 5.243000e-01   p_joint 3.726000e-01

Outputting figure to mutsig2_images.part000000000081/HSPA4.3_2599_10000_0.3338_0.5243_0.3726.png
                gene_name: HSPA4
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 61 percent done.
HSPA4L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.847290e-01	ci left: 1.594989e-02	ci right 2.133572e-02	k: 185	n:10000
Cons ci ratio: 8.133230e-02	ci left: 1.807775e-01	ci right 1.962044e-01	k: 1884	n:10000
KS ci ratio: 4.479208e-01	ci left: 5.903663e-03	ci right 9.392367e-03	k: 75	n:10000
HSPA4L   10000 perm   2 sec   (5800 perm/sec)   p_kst 7.500000e-03   p_cons 1.884000e-01   p_joint 1.850000e-02

Joint ci ratio: 1.588432e-01	ci left: 2.719860e-02	ci right 3.193948e-02	k: 590	n:20000
Cons ci ratio: 5.488815e-02	ci left: 1.975924e-01	ci right 2.087941e-01	k: 4063	n:20000
KS ci ratio: 3.116120e-01	ci left: 6.627764e-03	ci right 9.118513e-03	k: 156	n:20000
HSPA4L   20000 perm   4 sec   (4888 perm/sec)   p_kst 7.800000e-03   p_cons 2.031500e-01   p_joint 2.950000e-02

Joint ci ratio: 1.867970e-01	ci left: 1.311422e-02	ci right 1.584766e-02	k: 433	n:30000
Cons ci ratio: 4.498757e-02	ci left: 1.974030e-01	ci right 2.065214e-01	k: 6058	n:30000
KS ci ratio: 2.458934e-01	ci left: 7.367115e-03	ci right 9.463093e-03	k: 251	n:30000
HSPA4L   30000 perm   6 sec   (4664 perm/sec)   p_kst 8.366667e-03   p_cons 2.019333e-01   p_joint 1.443333e-02

Joint ci ratio: 1.441568e-01	ci left: 1.684024e-02	ci right 1.948037e-02	k: 725	n:40000
Cons ci ratio: 3.879106e-02	ci left: 1.994148e-01	ci right 2.073283e-01	k: 8134	n:40000
KS ci ratio: 2.123145e-01	ci left: 7.552622e-03	ci right 9.369820e-03	k: 337	n:40000
HSPA4L   40000 perm   9 sec   (4602 perm/sec)   p_kst 8.425000e-03   p_cons 2.033500e-01   p_joint 1.812500e-02

Joint ci ratio: 1.528701e-01	ci left: 1.198699e-02	ci right 1.399014e-02	k: 648	n:50000
Cons ci ratio: 3.476611e-02	ci left: 1.991836e-01	ci right 2.062509e-01	k: 10135	n:50000
KS ci ratio: 1.916231e-01	ci left: 7.504373e-03	ci right 9.113497e-03	k: 414	n:50000
HSPA4L   50000 perm   11 sec   (4436 perm/sec)   p_kst 8.280000e-03   p_cons 2.027000e-01   p_joint 1.296000e-02

Joint ci ratio: 1.618384e-01	ci left: 8.899230e-03	ci right 1.048207e-02	k: 580	n:60000
Cons ci ratio: 3.172097e-02	ci left: 1.996551e-01	ci right 2.061070e-01	k: 12172	n:60000
KS ci ratio: 1.763615e-01	ci left: 7.446130e-03	ci right 8.902045e-03	k: 489	n:60000
HSPA4L   60000 perm   14 sec   (4396 perm/sec)   p_kst 8.150000e-03   p_cons 2.028667e-01   p_joint 9.666667e-03

Joint ci ratio: 1.441268e-01	ci left: 9.703001e-03	ci right 1.122370e-02	k: 731	n:70000
Cons ci ratio: 2.939238e-02	ci left: 1.996277e-01	ci right 2.055970e-01	k: 14182	n:70000
KS ci ratio: 1.636645e-01	ci left: 7.463004e-03	ci right 8.806820e-03	k: 568	n:70000
HSPA4L   70000 perm   16 sec   (4342 perm/sec)   p_kst 8.114286e-03   p_cons 2.026000e-01   p_joint 1.044286e-02

Joint ci ratio: 1.412343e-01	ci left: 8.863518e-03	ci right 1.022241e-02	k: 762	n:80000
Cons ci ratio: 2.746129e-02	ci left: 2.002048e-01	ci right 2.057917e-01	k: 16239	n:80000
KS ci ratio: 1.528912e-01	ci left: 7.526589e-03	ci right 8.784472e-03	k: 651	n:80000
HSPA4L   80000 perm   19 sec   (4286 perm/sec)   p_kst 8.137500e-03   p_cons 2.029875e-01   p_joint 9.525000e-03

Joint ci ratio: 1.228360e-01	ci left: 1.050116e-02	ci right 1.188617e-02	k: 1006	n:90000
Cons ci ratio: 2.590321e-02	ci left: 2.002103e-01	ci right 2.054755e-01	k: 18255	n:90000
KS ci ratio: 1.433125e-01	ci left: 7.653307e-03	ci right 8.845381e-03	k: 741	n:90000
HSPA4L   90000 perm   22 sec   (4148 perm/sec)   p_kst 8.233333e-03   p_cons 2.028333e-01   p_joint 1.117778e-02

Joint ci ratio: 1.058863e-01	ci left: 1.280362e-02	ci right 1.424480e-02	k: 1351	n:100000
Cons ci ratio: 2.450535e-02	ci left: 2.012472e-01	ci right 2.062500e-01	k: 20374	n:100000
KS ci ratio: 1.354164e-01	ci left: 7.746986e-03	ci right 8.881810e-03	k: 830	n:100000
HSPA4L   100000 perm   24 sec   (4100 perm/sec)   p_kst 8.300000e-03   p_cons 2.037400e-01   p_joint 1.351000e-02

Joint ci ratio: 1.171699e-01	ci left: 9.482198e-03	ci right 1.067112e-02	k: 1107	n:110000
Cons ci ratio: 2.332671e-02	ci left: 2.018935e-01	ci right 2.066676e-01	k: 22470	n:110000
KS ci ratio: 1.299123e-01	ci left: 7.675522e-03	ci right 8.750649e-03	k: 902	n:110000
HSPA4L   110000 perm   27 sec   (4046 perm/sec)   p_kst 8.200000e-03   p_cons 2.042727e-01   p_joint 1.006364e-02

Joint ci ratio: 1.180831e-01	ci left: 8.562363e-03	ci right 9.644894e-03	k: 1091	n:120000
Cons ci ratio: 2.233296e-02	ci left: 2.020052e-01	ci right 2.065758e-01	k: 24514	n:120000
KS ci ratio: 1.240703e-01	ci left: 7.737885e-03	ci right 8.769424e-03	k: 989	n:120000
HSPA4L   120000 perm   30 sec   (3972 perm/sec)   p_kst 8.241667e-03   p_cons 2.042833e-01   p_joint 9.091667e-03

Joint ci ratio: 1.136447e-01	ci left: 8.553555e-03	ci right 9.591598e-03	k: 1178	n:130000
Cons ci ratio: 2.144003e-02	ci left: 2.023486e-01	ci right 2.067416e-01	k: 26590	n:130000
KS ci ratio: 1.190073e-01	ci left: 7.784105e-03	ci right 8.776478e-03	k: 1075	n:130000
HSPA4L   130000 perm   33 sec   (3924 perm/sec)   p_kst 8.269231e-03   p_cons 2.045385e-01   p_joint 9.061538e-03

Joint ci ratio: 8.934216e-02	ci left: 1.295790e-02	ci right 1.417666e-02	k: 1898	n:140000
Cons ci ratio: 2.063996e-02	ci left: 2.027456e-01	ci right 2.069809e-01	k: 28680	n:140000
KS ci ratio: 1.142698e-01	ci left: 7.859154e-03	ci right 8.818519e-03	k: 1166	n:140000
HSPA4L   140000 perm   36 sec   (3878 perm/sec)   p_kst 8.328571e-03   p_cons 2.048571e-01   p_joint 1.355714e-02

Joint ci ratio: 8.673819e-02	ci left: 1.285031e-02	ci right 1.402194e-02	k: 2014	n:150000
Cons ci ratio: 1.991143e-02	ci left: 2.032849e-01	ci right 2.073799e-01	k: 30799	n:150000
KS ci ratio: 1.112214e-01	ci left: 7.756301e-03	ci right 8.676194e-03	k: 1231	n:150000
HSPA4L   150000 perm   39 sec   (3830 perm/sec)   p_kst 8.206667e-03   p_cons 2.053267e-01   p_joint 1.342667e-02

Joint ci ratio: 8.670976e-02	ci left: 1.206530e-02	ci right 1.316497e-02	k: 2017	n:160000
Cons ci ratio: 1.925569e-02	ci left: 2.037465e-01	ci right 2.077141e-01	k: 32916	n:160000
KS ci ratio: 1.077365e-01	ci left: 7.763922e-03	ci right 8.654037e-03	k: 1312	n:160000
HSPA4L   160000 perm   42 sec   (3785 perm/sec)   p_kst 8.200000e-03   p_cons 2.057250e-01   p_joint 1.260625e-02

Joint ci ratio: 8.438279e-02	ci left: 1.200605e-02	ci right 1.306950e-02	k: 2130	n:170000
Cons ci ratio: 1.867549e-02	ci left: 2.038979e-01	ci right 2.077475e-01	k: 34989	n:170000
KS ci ratio: 1.047496e-01	ci left: 7.742395e-03	ci right 8.603916e-03	k: 1388	n:170000
HSPA4L   170000 perm   45 sec   (3739 perm/sec)   p_kst 8.164706e-03   p_cons 2.058176e-01   p_joint 1.252941e-02

Joint ci ratio: 8.364140e-02	ci left: 1.155104e-02	ci right 1.256476e-02	k: 2169	n:180000
Cons ci ratio: 1.814476e-02	ci left: 2.040340e-01	ci right 2.077755e-01	k: 37062	n:180000
KS ci ratio: 1.023862e-01	ci left: 7.664003e-03	ci right 8.496401e-03	k: 1453	n:180000
HSPA4L   180000 perm   49 sec   (3693 perm/sec)   p_kst 8.072222e-03   p_cons 2.059000e-01   p_joint 1.205000e-02

Joint ci ratio: 8.163735e-02	ci left: 1.149975e-02	ci right 1.248364e-02	k: 2277	n:190000
Cons ci ratio: 1.765543e-02	ci left: 2.041834e-01	ci right 2.078256e-01	k: 39140	n:190000
KS ci ratio: 1.001426e-01	ci left: 7.599193e-03	ci right 8.405401e-03	k: 1519	n:190000
HSPA4L   190000 perm   52 sec   (3648 perm/sec)   p_kst 7.994737e-03   p_cons 2.060000e-01   p_joint 1.198421e-02

Joint ci ratio: 7.956848e-02	ci left: 1.151268e-02	ci right 1.247155e-02	k: 2397	n:200000
Cons ci ratio: 1.721919e-02	ci left: 2.040250e-01	ci right 2.075736e-01	k: 41159	n:200000
KS ci ratio: 9.760697e-02	ci left: 7.609343e-03	ci right 8.395017e-03	k: 1599	n:200000
HSPA4L   200000 perm   55 sec   (3604 perm/sec)   p_kst 7.995000e-03   p_cons 2.057950e-01   p_joint 1.198500e-02

Outputting figure to mutsig2_images.part000000000081/HSPA4L.3_2596_200000_0.007995_0.2058_0.011985.png
                gene_name: HSPA4L
               theta_stop: 0.098 
                    nperm: 200000 
                     p_ks: 0.0080 
        ci_ks_bounds_left: 0.0076 
       ci_ks_bounds_right: 0.0084 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.012 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.012 

Current progress: 63 percent done.
HSPA8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.307184e-03	ci left: 9.529432e-01	ci right 9.609878e-01	k: 9571	n:10000
Cons ci ratio: 4.464907e-02	ci left: 4.254529e-01	ci right 4.449849e-01	k: 4352	n:10000
KS ci ratio: 1.171276e-02	ci left: 9.125529e-01	ci right 9.234021e-01	k: 9181	n:10000
HSPA8   10000 perm   2 sec   (6028 perm/sec)   p_kst 9.181000e-01   p_cons 4.352000e-01   p_joint 9.571000e-01

Outputting figure to mutsig2_images.part000000000081/HSPA8.3_1973_10000_0.9181_0.4352_0.9571.png
                gene_name: HSPA8
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 66 percent done.
HSPA9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.190559e-01	ci left: 9.194847e-02	ci right 1.036870e-01	k: 977	n:10000
Cons ci ratio: 4.661919e-02	ci left: 4.044221e-01	ci right 4.238280e-01	k: 4141	n:10000
KS ci ratio: 1.501555e-01	ci left: 5.899102e-02	ci right 6.866498e-02	k: 637	n:10000
HSPA9   10000 perm   2 sec   (6386 perm/sec)   p_kst 6.370000e-02   p_cons 4.141000e-01   p_joint 9.770000e-02

Joint ci ratio: 6.196113e-02	ci left: 1.615583e-01	ci right 1.719387e-01	k: 3334	n:20000
Cons ci ratio: 3.323075e-02	ci left: 4.034215e-01	ci right 4.171046e-01	k: 8205	n:20000
KS ci ratio: 1.044404e-01	ci left: 6.235342e-02	ci right 6.927346e-02	k: 1315	n:20000
HSPA9   20000 perm   4 sec   (5485 perm/sec)   p_kst 6.575000e-02   p_cons 4.102500e-01   p_joint 1.667000e-01

Joint ci ratio: 6.510910e-02	ci left: 1.042792e-01	ci right 1.113303e-01	k: 3233	n:30000
Cons ci ratio: 2.729031e-02	ci left: 4.018990e-01	ci right 4.130523e-01	k: 12224	n:30000
KS ci ratio: 8.490812e-02	ci left: 6.350998e-02	ci right 6.917435e-02	k: 1989	n:30000
HSPA9   30000 perm   6 sec   (5354 perm/sec)   p_kst 6.630000e-02   p_cons 4.074667e-01   p_joint 1.077667e-01

Outputting figure to mutsig2_images.part000000000081/HSPA9.3_2108_30000_0.0663_0.40747_0.10777.png
                gene_name: HSPA9
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.066 
        ci_ks_bounds_left: 0.064 
       ci_ks_bounds_right: 0.069 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 68 percent done.
HPSE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.474777e-02	ci left: 7.060407e-01	ci right 7.238339e-01	k: 7150	n:10000
Cons ci ratio: 2.033904e-02	ci left: 7.797545e-01	ci right 7.958775e-01	k: 7879	n:10000
KS ci ratio: 3.062734e-02	ci left: 6.113069e-01	ci right 6.304227e-01	k: 6209	n:10000
HPSE2   10000 perm   2 sec   (5988 perm/sec)   p_kst 6.209000e-01   p_cons 7.879000e-01   p_joint 7.150000e-01

Outputting figure to mutsig2_images.part000000000081/HPSE2.2_1865_10000_0.6209_0.7879_0.715.png
                gene_name: HPSE2
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.72 

Current progress: 71 percent done.
HRASLS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.264156e-01	ci left: 2.579881e-02	ci right 3.247924e-02	k: 290	n:10000
Cons ci ratio: 1.675368e-01	ci left: 4.753733e-02	ci right 5.632602e-02	k: 518	n:10000
KS ci ratio: 5.264337e-02	ci left: 3.472048e-01	ci right 3.660788e-01	k: 3566	n:10000
HRASLS   10000 perm   1 sec   (6956 perm/sec)   p_kst 3.566000e-01   p_cons 5.180000e-02   p_joint 2.900000e-02

Joint ci ratio: 1.505158e-01	ci left: 3.032647e-02	ci right 3.531057e-02	k: 655	n:20000
Cons ci ratio: 1.171652e-01	ci left: 4.988666e-02	ci right 5.614409e-02	k: 1059	n:20000
KS ci ratio: 3.662376e-02	ci left: 3.574763e-01	ci right 3.708632e-01	k: 7283	n:20000
HRASLS   20000 perm   3 sec   (6301 perm/sec)   p_kst 3.641500e-01   p_cons 5.295000e-02   p_joint 3.275000e-02

Joint ci ratio: 1.293580e-01	ci left: 2.777574e-02	ci right 3.164938e-02	k: 890	n:30000
Cons ci ratio: 9.538094e-02	ci left: 5.075222e-02	ci right 5.586806e-02	k: 1598	n:30000
KS ci ratio: 2.981724e-02	ci left: 3.600472e-01	ci right 3.709789e-01	k: 10965	n:30000
HRASLS   30000 perm   5 sec   (6029 perm/sec)   p_kst 3.655000e-01   p_cons 5.326667e-02   p_joint 2.966667e-02

Joint ci ratio: 1.140727e-01	ci left: 2.703697e-02	ci right 3.033192e-02	k: 1146	n:40000
Cons ci ratio: 8.326475e-02	ci left: 5.030986e-02	ci right 5.470539e-02	k: 2099	n:40000
KS ci ratio: 2.574241e-02	ci left: 3.622241e-01	ci right 3.716953e-01	k: 14678	n:40000
HRASLS   40000 perm   7 sec   (5840 perm/sec)   p_kst 3.669500e-01   p_cons 5.247500e-02   p_joint 2.865000e-02

Joint ci ratio: 9.944430e-02	ci left: 2.863920e-02	ci right 3.165568e-02	k: 1506	n:50000
Cons ci ratio: 7.451938e-02	ci left: 5.048250e-02	ci right 5.440967e-02	k: 2621	n:50000
KS ci ratio: 2.309797e-02	ci left: 3.612569e-01	ci right 3.697187e-01	k: 18274	n:50000
HRASLS   50000 perm   9 sec   (5684 perm/sec)   p_kst 3.654800e-01   p_cons 5.242000e-02   p_joint 3.012000e-02

Outputting figure to mutsig2_images.part000000000081/HRASLS.2_519_50000_0.36548_0.05242_0.03012.png
                gene_name: HRASLS
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.052 
      ci_cons_bounds_left: 0.050 
     ci_cons_bounds_right: 0.054 
                  p_joint: 0.030 
     ci_joint_bounds_left: 0.029 
    ci_joint_bounds_right: 0.032 

Current progress: 74 percent done.
HRASLS5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.586816e-02	ci left: 3.205861e-01	ci right 3.391131e-01	k: 3298	n:10000
Cons ci ratio: 1.135979e-01	ci left: 1.003243e-01	ci right 1.125061e-01	k: 1063	n:10000
KS ci ratio: 6.499942e-02	ci left: 2.579524e-01	ci right 2.753837e-01	k: 2666	n:10000
HRASLS5   10000 perm   2 sec   (5997 perm/sec)   p_kst 2.666000e-01   p_cons 1.063000e-01   p_joint 3.298000e-01

Joint ci ratio: 4.120909e-02	ci left: 3.050349e-01	ci right 3.179200e-01	k: 6229	n:20000
Cons ci ratio: 8.070988e-02	ci left: 1.012260e-01	ci right 1.097891e-01	k: 2109	n:20000
KS ci ratio: 4.633489e-02	ci left: 2.574044e-01	ci right 2.696644e-01	k: 5270	n:20000
HRASLS5   20000 perm   3 sec   (5763 perm/sec)   p_kst 2.635000e-01   p_cons 1.054500e-01   p_joint 3.114500e-01

Outputting figure to mutsig2_images.part000000000081/HRASLS5.2_864_20000_0.2635_0.10545_0.31145.png
                gene_name: HRASLS5
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 76 percent done.
HRG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.494051e-02	ci left: 5.473990e-01	ci right 5.669676e-01	k: 5572	n:10000
KS ci ratio: 7.485634e-03	ci left: 9.611050e-01	ci right 9.684210e-01	k: 9649	n:10000
HRG   10000 perm   2 sec   (6272 perm/sec)   p_kst 9.649000e-01   p_cons 5.572000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000081/HRG.2_1606_10000_0.9649_0.5572_1.png
                gene_name: HRG
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
HS1BP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.697613e-02	ci left: 5.192595e-01	ci right 5.389235e-01	k: 5291	n:10000
Cons ci ratio: 1.908499e-02	ci left: 8.005470e-01	ci right 8.160730e-01	k: 8084	n:10000
KS ci ratio: 6.447185e-02	ci left: 2.611186e-01	ci right 2.786156e-01	k: 2698	n:10000
HS1BP3   10000 perm   2 sec   (6308 perm/sec)   p_kst 2.698000e-01   p_cons 8.084000e-01   p_joint 5.291000e-01

Outputting figure to mutsig2_images.part000000000081/HS1BP3.2_1207_10000_0.2698_0.8084_0.5291.png
                gene_name: HS1BP3
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 82 percent done.
HS3ST2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.136577e-01	ci left: 1.002268e-01	ci right 1.124036e-01	k: 1062	n:10000
KS ci ratio: 4.272236e-02	ci left: 4.472002e-01	ci right 4.668248e-01	k: 4570	n:10000
HS3ST2   10000 perm   1 sec   (7032 perm/sec)   p_kst 4.570000e-01   p_cons 1.062000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 8.041197e-02	ci left: 1.019135e-01	ci right 1.105014e-01	k: 2123	n:20000
KS ci ratio: 3.024530e-02	ci left: 4.495286e-01	ci right 4.633841e-01	k: 9129	n:20000
HS3ST2   20000 perm   3 sec   (5832 perm/sec)   p_kst 4.564500e-01   p_cons 1.061500e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000081/HS3ST2.2_1112_20000_0.45645_0.10615_1.png
                gene_name: HS3ST2
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
HSCB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.680366e-02	ci left: 8.375528e-01	ci right 8.518458e-01	k: 8448	n:10000
Cons ci ratio: 5.657045e-02	ci left: 3.151274e-01	ci right 3.335750e-01	k: 3243	n:10000
KS ci ratio: 4.247362e-02	ci left: 4.500946e-01	ci right 4.697287e-01	k: 4599	n:10000
HSCB   10000 perm   1 sec   (7466 perm/sec)   p_kst 4.599000e-01   p_cons 3.243000e-01   p_joint 8.448000e-01

Outputting figure to mutsig2_images.part000000000081/HSCB.2_732_10000_0.4599_0.3243_0.8448.png
                gene_name: HSCB
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 87 percent done.
HSD17B12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.206560e-02	ci left: 4.548861e-01	ci right 4.745345e-01	k: 4647	n:10000
Cons ci ratio: 7.178385e-02	ci left: 2.213865e-01	ci right 2.379712e-01	k: 2296	n:10000
KS ci ratio: 9.405044e-02	ci left: 1.409954e-01	ci right 1.550103e-01	k: 1479	n:10000
HSD17B12   10000 perm   1 sec   (7061 perm/sec)   p_kst 1.479000e-01   p_cons 2.296000e-01   p_joint 4.647000e-01

Outputting figure to mutsig2_images.part000000000081/HSD17B12.2_983_10000_0.1479_0.2296_0.4647.png
                gene_name: HSD17B12
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 89 percent done.
HSF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.205586e-03	ci left: 9.637304e-01	ci right 9.707940e-01	k: 9674	n:10000
Cons ci ratio: 9.688766e-03	ci left: 9.377569e-01	ci right 9.469833e-01	k: 9425	n:10000
KS ci ratio: 3.347034e-02	ci left: 5.685494e-01	ci right 5.880049e-01	k: 5783	n:10000
HSF2   10000 perm   2 sec   (5754 perm/sec)   p_kst 5.783000e-01   p_cons 9.425000e-01   p_joint 9.674000e-01

Outputting figure to mutsig2_images.part000000000081/HSF2.2_1663_10000_0.5783_0.9425_0.9674.png
                gene_name: HSF2
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 92 percent done.
HSPA12B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.152117e-02	ci left: 2.226698e-01	ci right 2.392872e-01	k: 2309	n:10000
KS ci ratio: 2.777056e-02	ci left: 6.564574e-01	ci right 6.750460e-01	k: 6658	n:10000
HSPA12B   10000 perm   2 sec   (5914 perm/sec)   p_kst 6.658000e-01   p_cons 2.309000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000081/HSPA12B.2_2109_10000_0.6658_0.2309_1.png
                gene_name: HSPA12B
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
HSPA1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.218018e-02	ci left: 2.754728e-01	ci right 2.932529e-01	k: 2843	n:10000
Cons ci ratio: 1.129536e-02	ci left: 9.180131e-01	ci right 9.285388e-01	k: 9234	n:10000
KS ci ratio: 6.755301e-02	ci left: 2.433161e-01	ci right 2.604287e-01	k: 2518	n:10000
HSPA1L   10000 perm   2 sec   (6521 perm/sec)   p_kst 2.518000e-01   p_cons 9.234000e-01   p_joint 2.843000e-01

Outputting figure to mutsig2_images.part000000000081/HSPA1L.2_1930_10000_0.2518_0.9234_0.2843.png
                gene_name: HSPA1L
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 97 percent done.
HSPA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.187869e-01	ci left: 9.233774e-02	ci right 1.040975e-01	k: 981	n:10000
Cons ci ratio: 1.672033e-02	ci left: 8.388768e-01	ci right 8.531210e-01	k: 8461	n:10000
KS ci ratio: 3.187220e-01	ci left: 1.252543e-02	ci right 1.736316e-02	k: 148	n:10000
HSPA6   10000 perm   2 sec   (6148 perm/sec)   p_kst 1.480000e-02   p_cons 8.461000e-01   p_joint 9.810000e-02

Joint ci ratio: 5.884234e-02	ci left: 1.762293e-01	ci right 1.869634e-01	k: 3631	n:20000
Cons ci ratio: 1.233566e-02	ci left: 8.294785e-01	ci right 8.398240e-01	k: 16694	n:20000
KS ci ratio: 2.347484e-01	ci left: 1.213498e-02	ci right 1.540863e-02	k: 274	n:20000
HSPA6   20000 perm   3 sec   (5731 perm/sec)   p_kst 1.370000e-02   p_cons 8.347000e-01   p_joint 1.815500e-01

Joint ci ratio: 3.361053e-02	ci left: 3.066926e-01	ci right 3.172105e-01	k: 9358	n:30000
Cons ci ratio: 1.016054e-02	ci left: 8.279899e-01	ci right 8.364789e-01	k: 24968	n:30000
KS ci ratio: 1.939500e-01	ci left: 1.212952e-02	ci right 1.476595e-02	k: 402	n:30000
HSPA6   30000 perm   5 sec   (5533 perm/sec)   p_kst 1.340000e-02   p_cons 8.322667e-01   p_joint 3.119333e-01

Joint ci ratio: 5.578636e-02	ci left: 1.068015e-01	ci right 1.129553e-01	k: 4394	n:40000
Cons ci ratio: 8.793440e-03	ci left: 8.287535e-01	ci right 8.360982e-01	k: 33298	n:40000
KS ci ratio: 1.658414e-01	ci left: 1.263170e-02	ci right 1.493968e-02	k: 550	n:40000
HSPA6   40000 perm   7 sec   (5386 perm/sec)   p_kst 1.375000e-02   p_cons 8.324500e-01   p_joint 1.098500e-01

Joint ci ratio: 6.165445e-02	ci left: 7.248916e-02	ci right 7.712035e-02	k: 3739	n:50000
Cons ci ratio: 7.851239e-03	ci left: 8.296410e-01	ci right 8.362003e-01	k: 41647	n:50000
KS ci ratio: 1.484154e-01	ci left: 1.273795e-02	ci right 1.479907e-02	k: 687	n:50000
HSPA6   50000 perm   10 sec   (5263 perm/sec)   p_kst 1.374000e-02   p_cons 8.329400e-01   p_joint 7.478000e-02

Joint ci ratio: 5.620147e-02	ci left: 7.288828e-02	ci right 7.711961e-02	k: 4499	n:60000
Cons ci ratio: 7.021752e-03	ci left: 8.355980e-01	ci right 8.415026e-01	k: 50314	n:60000
KS ci ratio: 1.328652e-01	ci left: 1.334912e-02	ci right 1.526495e-02	k: 857	n:60000
HSPA6   60000 perm   12 sec   (5152 perm/sec)   p_kst 1.428333e-02   p_cons 8.385667e-01   p_joint 7.498333e-02

Joint ci ratio: 5.201643e-02	ci left: 7.308754e-02	ci right 7.700492e-02	k: 5252	n:70000
Cons ci ratio: 6.496633e-03	ci left: 8.359973e-01	ci right 8.414603e-01	k: 58712	n:70000
KS ci ratio: 1.234481e-01	ci left: 1.332272e-02	ci right 1.508932e-02	k: 993	n:70000
HSPA6   70000 perm   14 sec   (5047 perm/sec)   p_kst 1.418571e-02   p_cons 8.387429e-01   p_joint 7.502857e-02

Joint ci ratio: 3.776831e-02	ci left: 1.164292e-01	ci right 1.209235e-01	k: 9493	n:80000
Cons ci ratio: 6.087820e-03	ci left: 8.356925e-01	ci right 8.408080e-01	k: 67061	n:80000
KS ci ratio: 1.151671e-01	ci left: 1.345226e-02	ci right 1.510824e-02	k: 1141	n:80000
HSPA6   80000 perm   16 sec   (4914 perm/sec)   p_kst 1.426250e-02   p_cons 8.382625e-01   p_joint 1.186625e-01

Joint ci ratio: 4.599531e-02	ci left: 7.295757e-02	ci right 7.640324e-02	k: 6720	n:90000
Cons ci ratio: 5.744259e-03	ci left: 8.356211e-01	ci right 8.404460e-01	k: 75424	n:90000
KS ci ratio: 1.093057e-01	ci left: 1.331823e-02	ci right 1.486888e-02	k: 1267	n:90000
HSPA6   90000 perm   19 sec   (4814 perm/sec)   p_kst 1.407778e-02   p_cons 8.380444e-01   p_joint 7.466667e-02

Joint ci ratio: 2.465207e-02	ci left: 1.993261e-01	ci right 2.043112e-01	k: 20181	n:100000
Cons ci ratio: 5.458596e-03	ci left: 8.352892e-01	ci right 8.398712e-01	k: 83759	n:100000
KS ci ratio: 1.030636e-01	ci left: 1.352453e-02	ci right 1.500384e-02	k: 1425	n:100000
HSPA6   100000 perm   21 sec   (4718 perm/sec)   p_kst 1.425000e-02   p_cons 8.375900e-01   p_joint 2.018100e-01

Joint ci ratio: 2.261891e-02	ci left: 2.120501e-01	ci right 2.169104e-01	k: 23592	n:110000
Cons ci ratio: 5.206110e-03	ci left: 8.353156e-01	ci right 8.396847e-01	k: 92126	n:110000
KS ci ratio: 9.867015e-02	ci left: 1.344701e-02	ci right 1.485150e-02	k: 1555	n:110000
HSPA6   110000 perm   24 sec   (4631 perm/sec)   p_kst 1.413636e-02   p_cons 8.375091e-01   p_joint 2.144727e-01

Outputting figure to mutsig2_images.part000000000081/HSPA6.2_1936_110000_0.014136_0.83751_0.21447.png
                gene_name: HSPA6
               theta_stop: 0.099 
                    nperm: 110000 
                     p_ks: 0.014 
        ci_ks_bounds_left: 0.013 
       ci_ks_bounds_right: 0.015 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000081
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 81 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1418>
Subject: Job 8004170: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1418>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000082> was used as the working directory.
Started at Sun Nov 11 15:06:48 2012
Results reported at Sun Nov 11 15:19:38 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000082.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000082.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 82  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000082.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    905.28 sec.
    Max Memory :      4800 MB
    Max Swap   :      7024 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
82
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 82
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 82: processing genes 7329 - 7419
Calculating significance of each gene.
Using projection method.
7329	HSPB3	1
7330	HSPB7	3.955713e-01
7331	HSPB8	1.223760e-02
7332	HSPB9	1
7333	HSPBAP1	3.782536e-01
7334	HSPBP1	1
7335	HSPC159	4.764727e-01
7336	HSPD1	4.933135e-01
7337	HSPE1	1
7338	HSPG2	9.999999e-01
7339	HSPH1	1
7340	HTATIP2	1.315779e-01
7341	HTATSF1	8.838051e-01
7342	HTN1	1
7343	HTN3	1.073333e-01
7344	HTR1A	7.216795e-01
7345	HTR1B	1.869083e-01
7346	HTR1D	1
7347	HTR1E	2.067355e-01
7348	HTR1F	3.962456e-01
7349	HTR2A	2.868218e-01
7350	HTR2B	8.851402e-01
7351	HTR2C	1.056007e-01
7352	HTR3A	7.925265e-01
7353	HTR3B	1
7354	HTR3C	2.236452e-01
7355	HTR3D	6.887346e-01
7356	HTR3E	9.252646e-02
7357	HTR4	2.911287e-01
7358	HTR5A	4.117755e-01
7359	HTR6	6.993996e-01
7360	HTR7	1.572629e-01
7361	HTRA1	7.347069e-01
7362	HTRA2	6.119596e-01
7363	HTRA3	6.324117e-02
7364	HTRA4	3.305427e-01
7365	HTT	9.999377e-01
7366	HUNK	1
7367	HUS1	1
7368	HUS1B	6.864714e-01
7369	HUWE1	1.000000e+00
7370	HVCN1	1
7371	HYAL1	1.769495e-01
7372	HYAL2	1
7373	HYAL3	5.378143e-01
7374	HYAL4	1
7375	HYDIN	9.985582e-01
7376	HYI	1
7377	HYLS1	1
7378	HYOU1	9.745399e-01
7379	IAH1	1
7380	IAPP	1
7381	IARS	8.626405e-01
7382	IARS2	9.679784e-01
7383	IBSP	1.732574e-02
7384	IBTK	5.355927e-01
7385	ICA1	6.331363e-02
7386	ICA1L	1
7387	ICAM1	7.095692e-01
7388	ICAM2	1
7389	ICAM3	5.756624e-01
7390	ICAM4	5.227348e-01
7391	ICAM5	5.057800e-01
7392	ICK	7.889718e-01
7393	ICMT	1
7394	ICOS	1.377227e-01
7395	ICOSLG	1
7396	ICT1	3.033299e-01
7397	ID1	1
7398	ID2	4.728857e-01
7399	ID3	1
7400	IDE	1
7401	IDH1	4.393272e-01
7402	IDH2	1
7403	IDH3A	5.949660e-01
7404	IDH3B	1.647367e-01
7405	IDH3G	4.390032e-01
7406	IDI1	4.163117e-01
7407	IDI2	2.780073e-01
7408	IDO1	5.212852e-01
7409	IDO2	1
7410	IDS	8.016461e-01
7411	IDUA	5.391266e-01
7412	IER2	1
7413	IER3	1
7414	IER3IP1	1
7415	IER5	1
7416	IER5L	1
7417	IFFO1	2.764126e-01
7418	IFI16	2.618884e-01
7419	IFI27	1
Done

Running MutSig 2:
Scatter job 82: processing genes 7329 - 7419
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
HUWE1
Processing conservation and coverage...
74% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.474170e-02	ci left: 7.061416e-01	ci right 7.239330e-01	k: 7151	n:10000
Cons ci ratio: 1.477842e-02	ci left: 8.689718e-01	ci right 8.820086e-01	k: 8756	n:10000
KS ci ratio: 3.248534e-02	ci left: 5.830946e-01	ci right 6.024514e-01	k: 5928	n:10000
HUWE1   10000 perm   5 sec   (2038 perm/sec)   p_kst 5.928000e-01   p_cons 8.756000e-01   p_joint 7.151000e-01

Outputting figure to mutsig2_images.part000000000082/HUWE1.17_13449_10000_0.5928_0.8756_0.7151.png
                gene_name: HUWE1
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.72 

Current progress: 2 percent done.
HYDIN
Processing conservation and coverage...
63% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.161556e-02	ci left: 3.562506e-01	ci right 3.752277e-01	k: 3657	n:10000
Cons ci ratio: 2.999969e-02	ci left: 6.210534e-01	ci right 6.400704e-01	k: 6306	n:10000
KS ci ratio: 6.481713e-02	ci left: 2.590407e-01	ci right 2.764948e-01	k: 2677	n:10000
HYDIN   10000 perm   6 sec   (1798 perm/sec)   p_kst 2.677000e-01   p_cons 6.306000e-01   p_joint 3.657000e-01

Outputting figure to mutsig2_images.part000000000082/HYDIN.14_15715_10000_0.2677_0.6306_0.3657.png
                gene_name: HYDIN
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 4 percent done.
HSPG2
Processing conservation and coverage...
73% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.960380e-02	ci left: 4.849534e-01	ci right 5.046496e-01	k: 4948	n:10000
KS ci ratio: 1.031596e-02	ci left: 9.303005e-01	ci right 9.400441e-01	k: 9353	n:10000
HSPG2   10000 perm   6 sec   (1636 perm/sec)   p_kst 9.353000e-01   p_cons 4.948000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000082/HSPG2.11_13564_10000_0.9353_0.4948_1.png
                gene_name: HSPG2
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 6 percent done.
HTR1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.409225e-02	ci left: 8.791989e-01	ci right 8.917756e-01	k: 8856	n:10000
Cons ci ratio: 3.664360e-02	ci left: 5.237637e-01	ci right 5.434167e-01	k: 5336	n:10000
KS ci ratio: 3.049091e-02	ci left: 6.134166e-01	ci right 6.325117e-01	k: 6230	n:10000
HTR1A   10000 perm   2 sec   (5480 perm/sec)   p_kst 6.230000e-01   p_cons 5.336000e-01   p_joint 8.856000e-01

Outputting figure to mutsig2_images.part000000000082/HTR1A.7_1272_10000_0.623_0.5336_0.8856.png
                gene_name: HTR1A
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 8 percent done.
HTT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.785981e-02	ci left: 3.054047e-01	ci right 3.237035e-01	k: 3145	n:10000
Cons ci ratio: 1.482583e-02	ci left: 8.682565e-01	ci right 8.813243e-01	k: 8749	n:10000
KS ci ratio: 8.484586e-02	ci left: 1.683846e-01	ci right 1.834047e-01	k: 1758	n:10000
HTT   10000 perm   4 sec   (2671 perm/sec)   p_kst 1.758000e-01   p_cons 8.749000e-01   p_joint 3.145000e-01

Outputting figure to mutsig2_images.part000000000082/HTT.7_9697_10000_0.1758_0.8749_0.3145.png
                gene_name: HTT
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 10 percent done.
HSPB8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.430867e-02	ci left: 2.621082e-01	ci right 2.796255e-01	k: 2708	n:10000
Cons ci ratio: 2.569767e-02	ci left: 6.903061e-01	ci right 7.083777e-01	k: 6994	n:10000
KS ci ratio: 9.977908e-02	ci left: 1.269892e-01	ci right 1.404250e-01	k: 1336	n:10000
HSPB8   10000 perm   2 sec   (5764 perm/sec)   p_kst 1.336000e-01   p_cons 6.994000e-01   p_joint 2.708000e-01

Outputting figure to mutsig2_images.part000000000082/HSPB8.6_603_10000_0.1336_0.6994_0.2708.png
                gene_name: HSPB8
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 12 percent done.
HTR3E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.710368e-02	ci left: 8.327676e-01	ci right 8.472337e-01	k: 8401	n:10000
Cons ci ratio: 2.480242e-02	ci left: 7.051326e-01	ci right 7.229426e-01	k: 7141	n:10000
KS ci ratio: 2.333780e-02	ci left: 7.295662e-01	ci right 7.468948e-01	k: 7383	n:10000
HTR3E   10000 perm   2 sec   (5134 perm/sec)   p_kst 7.383000e-01   p_cons 7.141000e-01   p_joint 8.401000e-01

Outputting figure to mutsig2_images.part000000000082/HTR3E.6_1448_10000_0.7383_0.7141_0.8401.png
                gene_name: HTR3E
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 15 percent done.
IBSP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.126700e-02	ci left: 7.642560e-01	ci right 7.807849e-01	k: 7726	n:10000
KS ci ratio: 1.873320e-02	ci left: 8.063342e-01	ci right 8.216825e-01	k: 8141	n:10000
IBSP   10000 perm   2 sec   (5421 perm/sec)   p_kst 8.141000e-01   p_cons 7.726000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000082/IBSP.6_978_10000_0.8141_0.7726_1.png
                gene_name: IBSP
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 17 percent done.
IBTK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.149343e-02	ci left: 3.573442e-01	ci right 3.763334e-01	k: 3668	n:10000
Cons ci ratio: 1.055019e-01	ci left: 1.148645e-01	ci right 1.277571e-01	k: 1212	n:10000
KS ci ratio: 2.175662e-02	ci left: 7.560573e-01	ci right 7.727884e-01	k: 7645	n:10000
IBTK   10000 perm   3 sec   (3724 perm/sec)   p_kst 7.645000e-01   p_cons 1.212000e-01   p_joint 3.668000e-01

Joint ci ratio: 3.963917e-02	ci left: 3.218420e-01	ci right 3.349080e-01	k: 6567	n:20000
Cons ci ratio: 7.427185e-02	ci left: 1.176911e-01	ci right 1.268191e-01	k: 2444	n:20000
KS ci ratio: 1.527746e-02	ci left: 7.610776e-01	ci right 7.728447e-01	k: 15340	n:20000
IBTK   20000 perm   6 sec   (3492 perm/sec)   p_kst 7.670000e-01   p_cons 1.222000e-01   p_joint 3.283500e-01

Outputting figure to mutsig2_images.part000000000082/IBTK.6_4174_20000_0.767_0.1222_0.32835.png
                gene_name: IBTK
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 19 percent done.
HTR1E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.276929e-02	ci left: 1.755630e-01	ci right 1.908220e-01	k: 1831	n:10000
Cons ci ratio: 1.201483e-01	ci left: 9.039166e-02	ci right 1.020448e-01	k: 961	n:10000
KS ci ratio: 7.721745e-02	ci left: 1.969273e-01	ci right 2.128450e-01	k: 2048	n:10000
HTR1E   10000 perm   2 sec   (5896 perm/sec)   p_kst 2.048000e-01   p_cons 9.610000e-02   p_joint 1.831000e-01

Joint ci ratio: 7.594459e-02	ci left: 1.130680e-01	ci right 1.220435e-01	k: 2350	n:20000
Cons ci ratio: 8.336270e-02	ci left: 9.538497e-02	ci right 1.037319e-01	k: 1990	n:20000
KS ci ratio: 5.371275e-02	ci left: 2.046201e-01	ci right 2.159643e-01	k: 4205	n:20000
HTR1E   20000 perm   4 sec   (5124 perm/sec)   p_kst 2.102500e-01   p_cons 9.950000e-02   p_joint 1.175000e-01

Outputting figure to mutsig2_images.part000000000082/HTR1E.5_1102_20000_0.21025_0.0995_0.1175.png
                gene_name: HTR1E
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.100 
      ci_cons_bounds_left: 0.095 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 21 percent done.
HTR3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.380558e-02	ci left: 4.348278e-01	ci right 4.544044e-01	k: 4446	n:10000
Cons ci ratio: 3.942206e-02	ci left: 4.872524e-01	ci right 5.069493e-01	k: 4971	n:10000
KS ci ratio: 6.728524e-02	ci left: 2.447989e-01	ci right 2.619450e-01	k: 2533	n:10000
HTR3A   10000 perm   2 sec   (5023 perm/sec)   p_kst 2.533000e-01   p_cons 4.971000e-01   p_joint 4.446000e-01

Outputting figure to mutsig2_images.part000000000082/HTR3A.5_1609_10000_0.2533_0.4971_0.4446.png
                gene_name: HTR3A
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 23 percent done.
HTR3C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.884004e-02	ci left: 2.982644e-01	ci right 3.164479e-01	k: 3073	n:10000
Cons ci ratio: 5.565406e-02	ci left: 3.222736e-01	ci right 3.408246e-01	k: 3315	n:10000
KS ci ratio: 7.596042e-02	ci left: 2.022494e-01	ci right 2.183197e-01	k: 2102	n:10000
HTR3C   10000 perm   2 sec   (5878 perm/sec)   p_kst 2.102000e-01   p_cons 3.315000e-01   p_joint 3.073000e-01

Outputting figure to mutsig2_images.part000000000082/HTR3C.5_1380_10000_0.2102_0.3315_0.3073.png
                gene_name: HTR3C
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 25 percent done.
HUNK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.135169e-02	ci left: 7.628386e-01	ci right 7.794031e-01	k: 7712	n:10000
KS ci ratio: 1.916501e-02	ci left: 7.992275e-01	ci right 8.147933e-01	k: 8071	n:10000
HUNK   10000 perm   2 sec   (4801 perm/sec)   p_kst 8.071000e-01   p_cons 7.712000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000082/HUNK.5_2189_10000_0.8071_0.7712_1.png
                gene_name: HUNK
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 27 percent done.
ICA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.954840e-02	ci left: 4.856531e-01	ci right 5.053495e-01	k: 4955	n:10000
Cons ci ratio: 2.430514e-02	ci left: 7.134081e-01	ci right 7.310622e-01	k: 7223	n:10000
KS ci ratio: 7.492393e-02	ci left: 2.067847e-01	ci right 2.229817e-01	k: 2148	n:10000
ICA1   10000 perm   2 sec   (5567 perm/sec)   p_kst 2.148000e-01   p_cons 7.223000e-01   p_joint 4.955000e-01

Outputting figure to mutsig2_images.part000000000082/ICA1.5_1504_10000_0.2148_0.7223_0.4955.png
                gene_name: ICA1
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 29 percent done.
HTR2C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.791351e-02	ci left: 3.050079e-01	ci right 3.233005e-01	k: 3141	n:10000
Cons ci ratio: 7.435137e-02	ci left: 2.093488e-01	ci right 2.256161e-01	k: 2174	n:10000
KS ci ratio: 5.465244e-02	ci left: 3.303159e-01	ci right 3.489775e-01	k: 3396	n:10000
HTR2C   10000 perm   2 sec   (5388 perm/sec)   p_kst 3.396000e-01   p_cons 2.174000e-01   p_joint 3.141000e-01

Outputting figure to mutsig2_images.part000000000082/HTR2C.4_1393_10000_0.3396_0.2174_0.3141.png
                gene_name: HTR2C
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 31 percent done.
HTR5A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.804553e-02	ci left: 6.520288e-01	ci right 6.706771e-01	k: 6614	n:10000
KS ci ratio: 1.425851e-02	ci left: 8.767431e-01	ci right 8.894328e-01	k: 8832	n:10000
HTR5A   10000 perm   2 sec   (5473 perm/sec)   p_kst 8.832000e-01   p_cons 6.614000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000082/HTR5A.4_1082_10000_0.8832_0.6614_1.png
                gene_name: HTR5A
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 33 percent done.
HTRA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.706387e-02	ci left: 3.998396e-01	ci right 4.192132e-01	k: 4095	n:10000
KS ci ratio: 2.036945e-02	ci left: 7.792477e-01	ci right 7.953845e-01	k: 7874	n:10000
HTRA3   10000 perm   2 sec   (5580 perm/sec)   p_kst 7.874000e-01   p_cons 4.095000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000082/HTRA3.4_1398_10000_0.7874_0.4095_1.png
                gene_name: HTRA3
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 35 percent done.
ICAM5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.010390e-02	ci left: 3.700748e-01	ci right 3.891954e-01	k: 3796	n:10000
Cons ci ratio: 8.941686e-02	ci left: 1.539442e-01	ci right 1.684538e-01	k: 1611	n:10000
KS ci ratio: 3.761910e-02	ci left: 5.106536e-01	ci right 5.303344e-01	k: 5205	n:10000
ICAM5   10000 perm   2 sec   (5126 perm/sec)   p_kst 5.205000e-01   p_cons 1.611000e-01   p_joint 3.796000e-01

Outputting figure to mutsig2_images.part000000000082/ICAM5.4_2819_10000_0.5205_0.1611_0.3796.png
                gene_name: ICAM5
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 38 percent done.
IDH3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.071259e-02	ci left: 4.711640e-01	ci right 4.908471e-01	k: 4810	n:10000
KS ci ratio: 1.875175e-02	ci left: 8.060295e-01	ci right 8.213873e-01	k: 8138	n:10000
IDH3B   10000 perm   2 sec   (5587 perm/sec)   p_kst 8.138000e-01   p_cons 4.810000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000082/IDH3B.4_1366_10000_0.8138_0.481_1.png
                gene_name: IDH3B
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 40 percent done.
IFFO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.405044e-02	ci left: 1.409954e-01	ci right 1.550103e-01	k: 1479	n:10000
Cons ci ratio: 7.463647e-02	ci left: 2.080667e-01	ci right 2.242990e-01	k: 2161	n:10000
KS ci ratio: 9.302001e-02	ci left: 1.437406e-01	ci right 1.578635e-01	k: 1507	n:10000
IFFO1   10000 perm   2 sec   (5467 perm/sec)   p_kst 1.507000e-01   p_cons 2.161000e-01   p_joint 1.479000e-01

Outputting figure to mutsig2_images.part000000000082/IFFO1.4_1732_10000_0.1507_0.2161_0.1479.png
                gene_name: IFFO1
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.16 

Current progress: 42 percent done.
IFI16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.482738e-02	ci left: 5.490022e-01	ci right 5.685635e-01	k: 5588	n:10000
Cons ci ratio: 1.647580e-02	ci left: 8.427478e-01	ci right 8.568478e-01	k: 8499	n:10000
KS ci ratio: 6.388808e-02	ci left: 2.646814e-01	ci right 2.822508e-01	k: 2734	n:10000
IFI16   10000 perm   2 sec   (5197 perm/sec)   p_kst 2.734000e-01   p_cons 8.499000e-01   p_joint 5.588000e-01

Outputting figure to mutsig2_images.part000000000082/IFI16.4_2230_10000_0.2734_0.8499_0.5588.png
                gene_name: IFI16
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 44 percent done.
HTATIP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.607094e-02	ci left: 6.841568e-01	ci right 7.023305e-01	k: 6933	n:10000
KS ci ratio: 1.500802e-02	ci left: 8.654978e-01	ci right 8.786846e-01	k: 8722	n:10000
HTATIP2   10000 perm   2 sec   (6263 perm/sec)   p_kst 8.722000e-01   p_cons 6.933000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000082/HTATIP2.3_954_10000_0.8722_0.6933_1.png
                gene_name: HTATIP2
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 46 percent done.
HTR1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.421586e-02	ci left: 4.302397e-01	ci right 4.497953e-01	k: 4400	n:10000
Cons ci ratio: 1.424469e-02	ci left: 8.769477e-01	ci right 8.896281e-01	k: 8834	n:10000
KS ci ratio: 6.363186e-02	ci left: 2.662650e-01	ci right 2.838662e-01	k: 2750	n:10000
HTR1B   10000 perm   2 sec   (5854 perm/sec)   p_kst 2.750000e-01   p_cons 8.834000e-01   p_joint 4.400000e-01

Outputting figure to mutsig2_images.part000000000082/HTR1B.3_1177_10000_0.275_0.8834_0.44.png
                gene_name: HTR1B
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 48 percent done.
HTR2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.768106e-02	ci left: 1.318837e-01	ci right 1.455275e-01	k: 1386	n:10000
Cons ci ratio: 1.413391e-02	ci left: 8.785849e-01	ci right 8.911899e-01	k: 8850	n:10000
KS ci ratio: 1.142599e-01	ci left: 9.925222e-02	ci right 1.113788e-01	k: 1052	n:10000
HTR2A   10000 perm   2 sec   (5746 perm/sec)   p_kst 1.052000e-01   p_cons 8.850000e-01   p_joint 1.386000e-01

Joint ci ratio: 7.150001e-02	ci left: 1.259590e-01	ci right 1.353487e-01	k: 2612	n:20000
Cons ci ratio: 1.010314e-02	ci left: 8.782106e-01	ci right 8.871778e-01	k: 17655	n:20000
KS ci ratio: 7.980377e-02	ci left: 1.033377e-01	ci right 1.119767e-01	k: 2152	n:20000
HTR2A   20000 perm   4 sec   (5071 perm/sec)   p_kst 1.076000e-01   p_cons 8.827500e-01   p_joint 1.306000e-01

Outputting figure to mutsig2_images.part000000000082/HTR2A.3_1592_20000_0.1076_0.88275_0.1306.png
                gene_name: HTR2A
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 50 percent done.
HTR4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.188850e-02	ci left: 4.569827e-01	ci right 4.766367e-01	k: 4668	n:10000
Cons ci ratio: 6.447185e-02	ci left: 2.611186e-01	ci right 2.786156e-01	k: 2698	n:10000
KS ci ratio: 5.663503e-02	ci left: 3.146312e-01	ci right 3.330715e-01	k: 3238	n:10000
HTR4   10000 perm   2 sec   (5747 perm/sec)   p_kst 3.238000e-01   p_cons 2.698000e-01   p_joint 4.668000e-01

Outputting figure to mutsig2_images.part000000000082/HTR4.3_1487_10000_0.3238_0.2698_0.4668.png
                gene_name: HTR4
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 52 percent done.
HTR7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.549450e-02	ci left: 4.162808e-01	ci right 4.357623e-01	k: 4260	n:10000
Cons ci ratio: 5.536657e-02	ci left: 3.245569e-01	ci right 3.431400e-01	k: 3338	n:10000
KS ci ratio: 5.270076e-02	ci left: 3.467078e-01	ci right 3.655760e-01	k: 3561	n:10000
HTR7   10000 perm   2 sec   (5923 perm/sec)   p_kst 3.561000e-01   p_cons 3.338000e-01   p_joint 4.260000e-01

Outputting figure to mutsig2_images.part000000000082/HTR7.3_1460_10000_0.3561_0.3338_0.426.png
                gene_name: HTR7
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 54 percent done.
HYAL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.441687e-02	ci left: 8.743904e-01	ci right 8.871869e-01	k: 8809	n:10000
KS ci ratio: 2.370625e-02	ci left: 7.234042e-01	ci right 7.408604e-01	k: 7322	n:10000
HYAL1   10000 perm   2 sec   (6098 perm/sec)   p_kst 7.322000e-01   p_cons 8.809000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000082/HYAL1.3_1320_10000_0.7322_0.8809_1.png
                gene_name: HYAL1
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 56 percent done.
HYOU1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.832596e-02	ci left: 5.013506e-01	ci right 5.210429e-01	k: 5112	n:10000
Cons ci ratio: 1.765417e-02	ci left: 8.239157e-01	ci right 8.386908e-01	k: 8314	n:10000
KS ci ratio: 5.121749e-02	ci left: 3.598301e-01	ci right 3.788461e-01	k: 3693	n:10000
HYOU1   10000 perm   2 sec   (5418 perm/sec)   p_kst 3.693000e-01   p_cons 8.314000e-01   p_joint 5.112000e-01

Outputting figure to mutsig2_images.part000000000082/HYOU1.3_3100_10000_0.3693_0.8314_0.5112.png
                gene_name: HYOU1
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 58 percent done.
IARS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.689963e-02	ci left: 8.360254e-01	ci right 8.503741e-01	k: 8433	n:10000
Cons ci ratio: 4.724923e-02	ci left: 3.979471e-01	ci right 4.173068e-01	k: 4076	n:10000
KS ci ratio: 1.977202e-02	ci left: 7.891832e-01	ci right 8.050433e-01	k: 7972	n:10000
IARS   10000 perm   2 sec   (4731 perm/sec)   p_kst 7.972000e-01   p_cons 4.076000e-01   p_joint 8.433000e-01

Outputting figure to mutsig2_images.part000000000082/IARS.3_3921_10000_0.7972_0.4076_0.8433.png
                gene_name: IARS
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 60 percent done.
IARS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.758343e-02	ci left: 3.945608e-01	ci right 4.138950e-01	k: 4042	n:10000
Cons ci ratio: 2.541692e-02	ci left: 6.949445e-01	ci right 7.129366e-01	k: 7040	n:10000
KS ci ratio: 7.552859e-02	ci left: 2.041225e-01	ci right 2.202455e-01	k: 2121	n:10000
IARS2   10000 perm   2 sec   (4969 perm/sec)   p_kst 2.121000e-01   p_cons 7.040000e-01   p_joint 4.042000e-01

Outputting figure to mutsig2_images.part000000000082/IARS2.3_3131_10000_0.2121_0.704_0.4042.png
                gene_name: IARS2
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 62 percent done.
HSPBAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.027581e-02	ci left: 2.288905e-01	ci right 2.456629e-01	k: 2372	n:10000
Cons ci ratio: 8.726408e-02	ci left: 1.605234e-01	ci right 1.752706e-01	k: 1678	n:10000
KS ci ratio: 1.017199e-01	ci left: 1.226845e-01	ci right 1.359322e-01	k: 1292	n:10000
HSPBAP1   10000 perm   2 sec   (6062 perm/sec)   p_kst 1.292000e-01   p_cons 1.678000e-01   p_joint 2.372000e-01

Joint ci ratio: 3.360091e-02	ci left: 3.980862e-01	ci right 4.117414e-01	k: 8098	n:20000
Cons ci ratio: 6.106238e-02	ci left: 1.656075e-01	ci right 1.760884e-01	k: 3416	n:20000
KS ci ratio: 7.246001e-02	ci left: 1.230054e-01	ci right 1.323032e-01	k: 2552	n:20000
HSPBAP1   20000 perm   4 sec   (5246 perm/sec)   p_kst 1.276000e-01   p_cons 1.708000e-01   p_joint 4.049000e-01

Outputting figure to mutsig2_images.part000000000082/HSPBAP1.2_1499_20000_0.1276_0.1708_0.4049.png
                gene_name: HSPBAP1
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.41 

Current progress: 65 percent done.
HSPD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.693242e-02	ci left: 6.700507e-01	ci right 6.884448e-01	k: 6793	n:10000
Cons ci ratio: 2.041202e-02	ci left: 7.785383e-01	ci right 7.946944e-01	k: 7867	n:10000
KS ci ratio: 4.525351e-02	ci left: 4.188726e-01	ci right 4.383690e-01	k: 4286	n:10000
HSPD1   10000 perm   2 sec   (5782 perm/sec)   p_kst 4.286000e-01   p_cons 7.867000e-01   p_joint 6.793000e-01

Outputting figure to mutsig2_images.part000000000082/HSPD1.2_1766_10000_0.4286_0.7867_0.6793.png
                gene_name: HSPD1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 67 percent done.
HTR1F
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.391093e-02	ci left: 8.818604e-01	ci right 8.943125e-01	k: 8882	n:10000
Cons ci ratio: 3.252572e-02	ci left: 5.824925e-01	ci right 6.018537e-01	k: 5922	n:10000
KS ci ratio: 1.461527e-02	ci left: 8.714250e-01	ci right 8.843539e-01	k: 8780	n:10000
HTR1F   10000 perm   2 sec   (6359 perm/sec)   p_kst 8.780000e-01   p_cons 5.922000e-01   p_joint 8.882000e-01

Outputting figure to mutsig2_images.part000000000082/HTR1F.2_1105_10000_0.878_0.5922_0.8882.png
                gene_name: HTR1F
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 69 percent done.
HTR3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.290849e-03	ci left: 9.794135e-01	ci right 9.847004e-01	k: 9822	n:10000
Cons ci ratio: 5.208602e-02	ci left: 3.520751e-01	ci right 3.710056e-01	k: 3615	n:10000
KS ci ratio: 2.239646e-02	ci left: 7.453345e-01	ci right 7.623174e-01	k: 7539	n:10000
HTR3B   10000 perm   2 sec   (5979 perm/sec)   p_kst 7.539000e-01   p_cons 3.615000e-01   p_joint 9.822000e-01

Outputting figure to mutsig2_images.part000000000082/HTR3B.2_1362_10000_0.7539_0.3615_0.9822.png
                gene_name: HTR3B
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 71 percent done.
HTRA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.272236e-02	ci left: 4.472002e-01	ci right 4.668248e-01	k: 4570	n:10000
KS ci ratio: 1.740181e-02	ci left: 8.279846e-01	ci right 8.426195e-01	k: 8354	n:10000
HTRA2   10000 perm   2 sec   (6373 perm/sec)   p_kst 8.354000e-01   p_cons 4.570000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000082/HTRA2.2_1409_10000_0.8354_0.457_1.png
                gene_name: HTRA2
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
HTRA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.592170e-02	ci left: 1.361934e-01	ci right 1.500152e-01	k: 1430	n:10000
Cons ci ratio: 3.105821e-02	ci left: 6.046775e-01	ci right 6.238559e-01	k: 6143	n:10000
KS ci ratio: 2.554752e-01	ci left: 2.005779e-02	ci right 2.602453e-02	k: 229	n:10000
HTRA4   10000 perm   2 sec   (6187 perm/sec)   p_kst 2.290000e-02   p_cons 6.143000e-01   p_joint 1.430000e-01

Joint ci ratio: 1.432265e-01	ci left: 3.350911e-02	ci right 3.872688e-02	k: 721	n:20000
Cons ci ratio: 2.193942e-02	ci left: 6.080143e-01	ci right 6.215523e-01	k: 12296	n:20000
KS ci ratio: 1.881123e-01	ci left: 1.924843e-02	ci right 2.329242e-02	k: 424	n:20000
HTRA4   20000 perm   4 sec   (5353 perm/sec)   p_kst 2.120000e-02   p_cons 6.148000e-01   p_joint 3.605000e-02

Joint ci ratio: 8.438700e-02	ci left: 6.426150e-02	ci right 6.995601e-02	k: 2012	n:30000
Cons ci ratio: 1.805779e-02	ci left: 6.054561e-01	ci right 6.165224e-01	k: 18330	n:30000
KS ci ratio: 1.555373e-01	ci left: 1.911875e-02	ci right 2.237499e-02	k: 621	n:30000
HTRA4   30000 perm   6 sec   (5008 perm/sec)   p_kst 2.070000e-02   p_cons 6.110000e-01   p_joint 6.706667e-02

Joint ci ratio: 5.370143e-02	ci left: 1.143844e-01	ci right 1.207213e-01	k: 4701	n:40000
Cons ci ratio: 1.563535e-02	ci left: 6.063022e-01	ci right 6.158817e-01	k: 24444	n:40000
KS ci ratio: 1.365035e-01	ci left: 1.881957e-02	ci right 2.160069e-02	k: 807	n:40000
HTRA4   40000 perm   8 sec   (4845 perm/sec)   p_kst 2.017500e-02   p_cons 6.111000e-01   p_joint 1.175250e-01

Joint ci ratio: 4.774945e-02	ci left: 1.159366e-01	ci right 1.216278e-01	k: 5938	n:50000
Cons ci ratio: 1.398299e-02	ci left: 6.068707e-01	ci right 6.154364e-01	k: 30558	n:50000
KS ci ratio: 1.224023e-01	ci left: 1.886839e-02	ci right 2.134777e-02	k: 1004	n:50000
HTRA4   50000 perm   11 sec   (4699 perm/sec)   p_kst 2.008000e-02   p_cons 6.111600e-01   p_joint 1.187600e-01

Joint ci ratio: 2.733340e-02	ci left: 2.517815e-01	ci right 2.587755e-01	k: 15316	n:60000
Cons ci ratio: 1.239945e-02	ci left: 6.209784e-01	ci right 6.287429e-01	k: 37492	n:60000
KS ci ratio: 1.125983e-01	ci left: 1.868402e-02	ci right 2.092943e-02	k: 1187	n:60000
HTRA4   60000 perm   13 sec   (4577 perm/sec)   p_kst 1.978333e-02   p_cons 6.248667e-01   p_joint 2.552667e-01

Joint ci ratio: 2.999973e-02	ci left: 1.931358e-01	ci right 1.990323e-01	k: 13725	n:70000
Cons ci ratio: 1.145999e-02	ci left: 6.220741e-01	ci right 6.292584e-01	k: 43797	n:70000
KS ci ratio: 1.042842e-01	ci left: 1.875294e-02	ci right 2.083000e-02	k: 1384	n:70000
HTRA4   70000 perm   16 sec   (4470 perm/sec)   p_kst 1.977143e-02   p_cons 6.256714e-01   p_joint 1.960714e-01

Joint ci ratio: 2.914847e-02	ci left: 1.816930e-01	ci right 1.870799e-01	k: 14750	n:80000
Cons ci ratio: 1.073495e-02	ci left: 6.216470e-01	ci right 6.283689e-01	k: 50001	n:80000
KS ci ratio: 9.856581e-02	ci left: 1.843105e-02	ci right 2.035403e-02	k: 1550	n:80000
HTRA4   80000 perm   18 sec   (4368 perm/sec)   p_kst 1.937500e-02   p_cons 6.250125e-01   p_joint 1.843750e-01

Outputting figure to mutsig2_images.part000000000082/HTRA4.2_1467_80000_0.019375_0.62501_0.18438.png
                gene_name: HTRA4
               theta_stop: 0.099 
                    nperm: 80000 
                     p_ks: 0.019 
        ci_ks_bounds_left: 0.018 
       ci_ks_bounds_right: 0.020 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 75 percent done.
HYAL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.541582e-02	ci left: 2.046155e-01	ci right 2.207523e-01	k: 2126	n:10000
Cons ci ratio: 9.162892e-02	ci left: 1.475656e-01	ci right 1.618362e-01	k: 1546	n:10000
KS ci ratio: 1.230204e-02	ci left: 9.046320e-01	ci right 9.159277e-01	k: 9104	n:10000
HYAL3   10000 perm   2 sec   (6366 perm/sec)   p_kst 9.104000e-01   p_cons 1.546000e-01   p_joint 2.126000e-01

Outputting figure to mutsig2_images.part000000000082/HYAL3.2_1266_10000_0.9104_0.1546_0.2126.png
                gene_name: HYAL3
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 77 percent done.
HYAL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.811442e-02	ci left: 6.509218e-01	ci right 6.695847e-01	k: 6603	n:10000
Cons ci ratio: 5.852375e-02	ci left: 3.005450e-01	ci right 3.187660e-01	k: 3096	n:10000
KS ci ratio: 1.584476e-02	ci left: 8.526363e-01	ci right 8.663535e-01	k: 8596	n:10000
HYAL4   10000 perm   2 sec   (6027 perm/sec)   p_kst 8.596000e-01   p_cons 3.096000e-01   p_joint 6.603000e-01

Outputting figure to mutsig2_images.part000000000082/HYAL4.2_1458_10000_0.8596_0.3096_0.6603.png
                gene_name: HYAL4
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 79 percent done.
ICAM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.282959e-02	ci left: 5.779777e-01	ci right 5.973712e-01	k: 5877	n:10000
Cons ci ratio: 1.605409e-02	ci left: 8.493730e-01	ci right 8.632188e-01	k: 8564	n:10000
KS ci ratio: 7.752686e-02	ci left: 1.956464e-01	ci right 2.115267e-01	k: 2035	n:10000
ICAM1   10000 perm   2 sec   (6113 perm/sec)   p_kst 2.035000e-01   p_cons 8.564000e-01   p_joint 5.877000e-01

Outputting figure to mutsig2_images.part000000000082/ICAM1.2_1627_10000_0.2035_0.8564_0.5877.png
                gene_name: ICAM1
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 81 percent done.
ICAM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.964358e-02	ci left: 7.913132e-01	ci right 8.071121e-01	k: 7993	n:10000
KS ci ratio: 8.417606e-03	ci left: 9.517953e-01	ci right 9.599365e-01	k: 9560	n:10000
ICAM3   10000 perm   2 sec   (5740 perm/sec)   p_kst 9.560000e-01   p_cons 7.993000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000082/ICAM3.2_1672_10000_0.956_0.7993_1.png
                gene_name: ICAM3
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
ICK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.938045e-01	ci left: 3.548103e-02	ci right 4.319029e-02	k: 392	n:10000
Cons ci ratio: 1.490694e-02	ci left: 8.670303e-01	ci right 8.801512e-01	k: 8737	n:10000
KS ci ratio: 2.870972e-01	ci left: 1.567108e-02	ci right 2.101476e-02	k: 182	n:10000
ICK   10000 perm   2 sec   (5745 perm/sec)   p_kst 1.820000e-02   p_cons 8.737000e-01   p_joint 3.920000e-02

Joint ci ratio: 1.378673e-01	ci left: 3.616580e-02	ci right 4.156932e-02	k: 776	n:20000
Cons ci ratio: 1.060892e-02	ci left: 8.675445e-01	ci right 8.768470e-01	k: 17445	n:20000
KS ci ratio: 2.024506e-01	ci left: 1.653520e-02	ci right 2.030666e-02	k: 367	n:20000
ICK   20000 perm   4 sec   (4961 perm/sec)   p_kst 1.835000e-02   p_cons 8.722500e-01   p_joint 3.880000e-02

Joint ci ratio: 1.117486e-01	ci left: 3.719416e-02	ci right 4.162894e-02	k: 1181	n:30000
Cons ci ratio: 8.589843e-03	ci left: 8.702932e-01	ci right 8.778342e-01	k: 26223	n:30000
KS ci ratio: 1.629124e-01	ci left: 1.738915e-02	ci right 2.050500e-02	k: 567	n:30000
ICK   30000 perm   7 sec   (4596 perm/sec)   p_kst 1.890000e-02   p_cons 8.741000e-01   p_joint 3.936667e-02

Joint ci ratio: 1.112104e-01	ci left: 2.844726e-02	ci right 3.182141e-02	k: 1204	n:40000
Cons ci ratio: 7.698603e-03	ci left: 8.629763e-01	ci right 8.696705e-01	k: 34654	n:40000
KS ci ratio: 1.396219e-01	ci left: 1.797425e-02	ci right 2.069616e-02	k: 772	n:40000
ICK   40000 perm   9 sec   (4359 perm/sec)   p_kst 1.930000e-02   p_cons 8.663500e-01   p_joint 3.010000e-02

Joint ci ratio: 1.000968e-01	ci left: 2.826841e-02	ci right 3.126652e-02	k: 1487	n:50000
Cons ci ratio: 6.877158e-03	ci left: 8.636289e-01	ci right 8.696085e-01	k: 43332	n:50000
KS ci ratio: 1.256298e-01	ci left: 1.789884e-02	ci right 2.031744e-02	k: 954	n:50000
ICK   50000 perm   12 sec   (4262 perm/sec)   p_kst 1.908000e-02   p_cons 8.666400e-01   p_joint 2.974000e-02

Joint ci ratio: 1.153009e-01	ci left: 1.780921e-02	ci right 2.000434e-02	k: 1133	n:60000
Cons ci ratio: 6.301619e-03	ci left: 8.630129e-01	ci right 8.684850e-01	k: 51946	n:60000
KS ci ratio: 1.153009e-01	ci left: 1.780921e-02	ci right 2.000434e-02	k: 1133	n:60000
ICK   60000 perm   14 sec   (4188 perm/sec)   p_kst 1.888333e-02   p_cons 8.657667e-01   p_joint 1.888333e-02

Joint ci ratio: 8.437230e-02	ci left: 2.865071e-02	ci right 3.118845e-02	k: 2093	n:70000
Cons ci ratio: 5.844775e-03	ci left: 8.627918e-01	ci right 8.678636e-01	k: 60574	n:70000
KS ci ratio: 1.057343e-01	ci left: 1.823799e-02	ci right 2.028785e-02	k: 1347	n:70000
ICK   70000 perm   17 sec   (4099 perm/sec)   p_kst 1.924286e-02   p_cons 8.653429e-01   p_joint 2.990000e-02

Joint ci ratio: 6.781877e-02	ci left: 3.872633e-02	ci right 4.145715e-02	k: 3206	n:80000
Cons ci ratio: 5.470621e-03	ci left: 8.628140e-01	ci right 8.675595e-01	k: 69216	n:80000
KS ci ratio: 9.811519e-02	ci left: 1.860183e-02	ci right 2.053324e-02	k: 1564	n:80000
ICK   80000 perm   20 sec   (4026 perm/sec)   p_kst 1.955000e-02   p_cons 8.652000e-01   p_joint 4.007500e-02

Outputting figure to mutsig2_images.part000000000082/ICK.2_1951_80000_0.01955_0.8652_0.040075.png
                gene_name: ICK
               theta_stop: 0.098 
                    nperm: 80000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.021 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.040 
     ci_joint_bounds_left: 0.039 
    ci_joint_bounds_right: 0.041 

Current progress: 85 percent done.
ICOS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.846095e-01	ci left: 4.932166e-03	ci right 8.165407e-03	k: 64	n:10000
Cons ci ratio: 1.501474e-02	ci left: 8.653957e-01	ci right 8.785868e-01	k: 8721	n:10000
KS ci ratio: 6.614075e-01	ci left: 2.355713e-03	ci right 4.747948e-03	k: 34	n:10000
ICOS   10000 perm   2 sec   (6628 perm/sec)   p_kst 3.400000e-03   p_cons 8.721000e-01   p_joint 6.400000e-03

Joint ci ratio: 2.453702e-01	ci left: 1.105337e-02	ci right 1.419071e-02	k: 251	n:20000
Cons ci ratio: 1.087852e-02	ci left: 8.617588e-01	ci right 8.712344e-01	k: 17331	n:20000
KS ci ratio: 4.579519e-01	ci left: 2.817812e-03	ci right 4.531487e-03	k: 72	n:20000
ICOS   20000 perm   4 sec   (5632 perm/sec)   p_kst 3.600000e-03   p_cons 8.665500e-01   p_joint 1.255000e-02

Joint ci ratio: 2.392788e-01	ci left: 7.805623e-03	ci right 9.957774e-03	k: 265	n:30000
Cons ci ratio: 8.909523e-03	ci left: 8.619244e-01	ci right 8.696712e-01	k: 25975	n:30000
KS ci ratio: 3.601489e-01	ci left: 3.226442e-03	ci right 4.672237e-03	k: 117	n:30000
ICOS   30000 perm   6 sec   (5298 perm/sec)   p_kst 3.900000e-03   p_cons 8.658333e-01   p_joint 8.833333e-03

Joint ci ratio: 1.860596e-01	ci left: 9.953278e-03	ci right 1.201864e-02	k: 438	n:40000
Cons ci ratio: 7.792241e-03	ci left: 8.601219e-01	ci right 8.668752e-01	k: 34541	n:40000
KS ci ratio: 3.227175e-01	ci left: 3.082802e-03	ci right 4.291016e-03	k: 146	n:40000
ICOS   40000 perm   8 sec   (5088 perm/sec)   p_kst 3.650000e-03   p_cons 8.635250e-01   p_joint 1.095000e-02

Joint ci ratio: 1.369574e-01	ci left: 1.501497e-02	ci right 1.724172e-02	k: 805	n:50000
Cons ci ratio: 7.005123e-03	ci left: 8.592688e-01	ci right 8.653291e-01	k: 43116	n:50000
KS ci ratio: 2.884511e-01	ci left: 3.149686e-03	ci right 4.229200e-03	k: 183	n:50000
ICOS   50000 perm   10 sec   (4927 perm/sec)   p_kst 3.660000e-03   p_cons 8.623200e-01   p_joint 1.610000e-02

Joint ci ratio: 1.407272e-01	ci left: 1.186757e-02	ci right 1.368001e-02	k: 765	n:60000
Cons ci ratio: 6.412322e-03	ci left: 8.588783e-01	ci right 8.644200e-01	k: 51700	n:60000
KS ci ratio: 2.574180e-01	ci left: 3.354675e-03	ci right 4.360920e-03	k: 230	n:60000
ICOS   60000 perm   12 sec   (4825 perm/sec)   p_kst 3.833333e-03   p_cons 8.616667e-01   p_joint 1.275000e-02

Joint ci ratio: 1.612533e-01	ci left: 7.696060e-03	ci right 9.059449e-03	k: 585	n:70000
Cons ci ratio: 5.943629e-03	ci left: 8.588038e-01	ci right 8.639376e-01	k: 60297	n:70000
KS ci ratio: 2.337942e-01	ci left: 3.532482e-03	ci right 4.480789e-03	k: 279	n:70000
ICOS   70000 perm   15 sec   (4712 perm/sec)   p_kst 3.985714e-03   p_cons 8.613857e-01   p_joint 8.357143e-03

Joint ci ratio: 1.303690e-01	ci left: 1.044599e-02	ci right 1.191478e-02	k: 893	n:80000
Cons ci ratio: 5.567844e-03	ci left: 8.586212e-01	ci right 8.634276e-01	k: 68883	n:80000
KS ci ratio: 2.169990e-01	ci left: 3.621719e-03	ci right 4.514837e-03	k: 324	n:80000
ICOS   80000 perm   17 sec   (4617 perm/sec)   p_kst 4.050000e-03   p_cons 8.610375e-01   p_joint 1.116250e-02

Joint ci ratio: 1.561280e-01	ci left: 6.412288e-03	ci right 7.508741e-03	k: 625	n:90000
Cons ci ratio: 5.259969e-03	ci left: 8.582752e-01	ci right 8.628126e-01	k: 77450	n:90000
KS ci ratio: 2.039248e-01	ci left: 3.671932e-03	ci right 4.516081e-03	k: 367	n:90000
ICOS   90000 perm   20 sec   (4527 perm/sec)   p_kst 4.077778e-03   p_cons 8.605556e-01   p_joint 6.944444e-03

Joint ci ratio: 1.487154e-01	ci left: 6.386652e-03	ci right 7.422259e-03	k: 689	n:100000
Cons ci ratio: 4.980169e-03	ci left: 8.588706e-01	ci right 8.631685e-01	k: 86103	n:100000
KS ci ratio: 1.927253e-01	ci left: 3.722912e-03	ci right 4.526269e-03	k: 411	n:100000
ICOS   100000 perm   22 sec   (4445 perm/sec)   p_kst 4.110000e-03   p_cons 8.610300e-01   p_joint 6.890000e-03

Joint ci ratio: 1.531809e-01	ci left: 5.464688e-03	ci right 6.379839e-03	k: 650	n:110000
Cons ci ratio: 4.747550e-03	ci left: 8.590147e-01	ci right 8.631117e-01	k: 94718	n:110000
KS ci ratio: 1.858686e-01	ci left: 3.652919e-03	ci right 4.409963e-03	k: 442	n:110000
ICOS   110000 perm   25 sec   (4361 perm/sec)   p_kst 4.018182e-03   p_cons 8.610727e-01   p_joint 5.909091e-03

Joint ci ratio: 1.362561e-01	ci left: 6.383061e-03	ci right 7.324342e-03	k: 821	n:120000
Cons ci ratio: 4.546968e-03	ci left: 8.590214e-01	ci right 8.629445e-01	k: 103319	n:120000
KS ci ratio: 1.787508e-01	ci left: 3.634818e-03	ci right 4.356144e-03	k: 478	n:120000
ICOS   120000 perm   28 sec   (4280 perm/sec)   p_kst 3.983333e-03   p_cons 8.609917e-01   p_joint 6.841667e-03

Joint ci ratio: 1.403897e-01	ci left: 5.542856e-03	ci right 6.387102e-03	k: 774	n:130000
Cons ci ratio: 4.371096e-03	ci left: 8.589606e-01	ci right 8.627310e-01	k: 111911	n:130000
KS ci ratio: 1.722249e-01	ci left: 3.627332e-03	ci right 4.318160e-03	k: 515	n:130000
ICOS   130000 perm   31 sec   (4199 perm/sec)   p_kst 3.961538e-03   p_cons 8.608538e-01   p_joint 5.953846e-03

Joint ci ratio: 1.353331e-01	ci left: 5.553835e-03	ci right 6.366831e-03	k: 833	n:140000
Cons ci ratio: 4.212785e-03	ci left: 8.589901e-01	ci right 8.626235e-01	k: 120514	n:140000
KS ci ratio: 1.662144e-01	ci left: 3.628172e-03	ci right 4.292632e-03	k: 553	n:140000
ICOS   140000 perm   34 sec   (4122 perm/sec)   p_kst 3.950000e-03   p_cons 8.608143e-01   p_joint 5.950000e-03

Joint ci ratio: 1.312306e-01	ci left: 5.525127e-03	ci right 6.307490e-03	k: 886	n:150000
Cons ci ratio: 4.071196e-03	ci left: 8.589776e-01	ci right 8.624884e-01	k: 129111	n:150000
KS ci ratio: 1.612028e-01	ci left: 3.610066e-03	ci right 4.249344e-03	k: 588	n:150000
ICOS   150000 perm   37 sec   (4047 perm/sec)   p_kst 3.920000e-03   p_cons 8.607400e-01   p_joint 5.906667e-03

Joint ci ratio: 1.322329e-01	ci left: 5.101160e-03	ci right 5.829437e-03	k: 873	n:160000
Cons ci ratio: 3.940621e-03	ci left: 8.591131e-01	ci right 8.625114e-01	k: 137731	n:160000
KS ci ratio: 1.568714e-01	ci left: 3.582475e-03	ci right 4.198217e-03	k: 621	n:160000
ICOS   160000 perm   40 sec   (3977 perm/sec)   p_kst 3.881250e-03   p_cons 8.608187e-01   p_joint 5.456250e-03

Joint ci ratio: 1.282588e-01	ci left: 5.114083e-03	ci right 5.820591e-03	k: 928	n:170000
Cons ci ratio: 3.826920e-03	ci left: 8.589149e-01	ci right 8.622140e-01	k: 146297	n:170000
KS ci ratio: 1.521732e-01	ci left: 3.592285e-03	ci right 4.189536e-03	k: 660	n:170000
ICOS   170000 perm   43 sec   (3909 perm/sec)   p_kst 3.882353e-03   p_cons 8.605706e-01   p_joint 5.458824e-03

Joint ci ratio: 1.155789e-01	ci left: 5.982837e-03	ci right 6.722086e-03	k: 1142	n:180000
Cons ci ratio: 3.719415e-03	ci left: 8.589411e-01	ci right 8.621473e-01	k: 154899	n:180000
KS ci ratio: 1.481924e-01	ci left: 3.585197e-03	ci right 4.164295e-03	k: 696	n:180000
ICOS   180000 perm   47 sec   (3846 perm/sec)   p_kst 3.866667e-03   p_cons 8.605500e-01   p_joint 6.344444e-03

Joint ci ratio: 1.220494e-01	ci left: 5.070302e-03	ci right 5.734400e-03	k: 1025	n:190000
Cons ci ratio: 3.621600e-03	ci left: 8.588917e-01	ci right 8.620131e-01	k: 163487	n:190000
KS ci ratio: 1.448063e-01	ci left: 3.563817e-03	ci right 4.125172e-03	k: 729	n:190000
ICOS   190000 perm   50 sec   (3779 perm/sec)   p_kst 3.836842e-03   p_cons 8.604579e-01   p_joint 5.394737e-03

Joint ci ratio: 8.230407e-02	ci left: 1.075318e-02	ci right 1.168106e-02	k: 2242	n:200000
Cons ci ratio: 3.534129e-03	ci left: 8.586423e-01	ci right 8.616872e-01	k: 172034	n:200000
KS ci ratio: 1.404462e-01	ci left: 3.607426e-03	ci right 4.157108e-03	k: 775	n:200000
ICOS   200000 perm   54 sec   (3713 perm/sec)   p_kst 3.875000e-03   p_cons 8.601700e-01   p_joint 1.121000e-02

Joint ci ratio: 9.158854e-02	ci left: 8.251373e-03	ci right 9.047993e-03	k: 1815	n:210000
Cons ci ratio: 3.451051e-03	ci left: 8.585325e-01	ci right 8.615052e-01	k: 180605	n:210000
KS ci ratio: 1.367921e-01	ci left: 3.628711e-03	ci right 4.166078e-03	k: 817	n:210000
ICOS   210000 perm   58 sec   (3638 perm/sec)   p_kst 3.890476e-03   p_cons 8.600238e-01   p_joint 8.642857e-03

Joint ci ratio: 9.168310e-02	ci left: 7.862914e-03	ci right 8.622855e-03	k: 1812	n:220000
Cons ci ratio: 3.372229e-03	ci left: 8.585293e-01	ci right 8.614339e-01	k: 189197	n:220000
KS ci ratio: 1.334870e-01	ci left: 3.643834e-03	ci right 4.169369e-03	k: 858	n:220000
ICOS   220000 perm   62 sec   (3566 perm/sec)   p_kst 3.900000e-03   p_cons 8.599864e-01   p_joint 8.236364e-03

Joint ci ratio: 8.722776e-02	ci left: 8.324497e-03	ci right 9.087961e-03	k: 2001	n:230000
Cons ci ratio: 3.300775e-03	ci left: 8.583656e-01	ci right 8.612079e-01	k: 197752	n:230000
KS ci ratio: 1.306292e-01	ci left: 3.645166e-03	ci right 4.158765e-03	k: 896	n:230000
ICOS   230000 perm   65 sec   (3512 perm/sec)   p_kst 3.895652e-03   p_cons 8.597913e-01   p_joint 8.700000e-03

Joint ci ratio: 8.535087e-02	ci left: 8.340477e-03	ci right 9.088127e-03	k: 2090	n:240000
Cons ci ratio: 3.228870e-03	ci left: 8.585761e-01	ci right 8.613569e-01	k: 206393	n:240000
KS ci ratio: 1.279475e-01	ci left: 3.646497e-03	ci right 4.148935e-03	k: 934	n:240000
ICOS   240000 perm   69 sec   (3458 perm/sec)   p_kst 3.891667e-03   p_cons 8.599708e-01   p_joint 8.708333e-03

Joint ci ratio: 8.335902e-02	ci left: 8.402346e-03	ci right 9.137110e-03	k: 2191	n:250000
Cons ci ratio: 3.160622e-03	ci left: 8.588345e-01	ci right 8.615572e-01	k: 215050	n:250000
KS ci ratio: 1.247186e-01	ci left: 3.690448e-03	ci right 4.185162e-03	k: 983	n:250000
ICOS   250000 perm   73 sec   (3407 perm/sec)   p_kst 3.932000e-03   p_cons 8.602000e-01   p_joint 8.764000e-03

Joint ci ratio: 6.258328e-02	ci left: 1.439993e-02	ci right 1.533400e-02	k: 3864	n:260000
Cons ci ratio: 3.099640e-03	ci left: 8.588302e-01	ci right 8.615002e-01	k: 223644	n:260000
KS ci ratio: 1.220789e-01	ci left: 3.708790e-03	ci right 4.194679e-03	k: 1026	n:260000
ICOS   260000 perm   78 sec   (3347 perm/sec)   p_kst 3.946154e-03   p_cons 8.601692e-01   p_joint 1.486154e-02

Joint ci ratio: 5.323735e-02	ci left: 1.916085e-02	ci right 2.021246e-02	k: 5314	n:270000
Cons ci ratio: 3.041121e-03	ci left: 8.589011e-01	ci right 8.615208e-01	k: 232258	n:270000
KS ci ratio: 1.197124e-01	ci left: 3.718688e-03	ci right 4.195761e-03	k: 1067	n:270000
ICOS   270000 perm   82 sec   (3294 perm/sec)   p_kst 3.951852e-03   p_cons 8.602148e-01   p_joint 1.968148e-02

Joint ci ratio: 5.237920e-02	ci left: 1.909679e-02	ci right 2.012747e-02	k: 5490	n:280000
Cons ci ratio: 2.986283e-03	ci left: 8.589279e-01	ci right 8.615003e-01	k: 240861	n:280000
KS ci ratio: 1.177987e-01	ci left: 3.707163e-03	ci right 4.174625e-03	k: 1102	n:280000
ICOS   280000 perm   86 sec   (3250 perm/sec)   p_kst 3.935714e-03   p_cons 8.602179e-01   p_joint 1.960714e-02

Joint ci ratio: 5.147792e-02	ci left: 1.909856e-02	ci right 2.011107e-02	k: 5684	n:290000
Cons ci ratio: 2.936160e-03	ci left: 8.588010e-01	ci right 8.613297e-01	k: 249420	n:290000
KS ci ratio: 1.157699e-01	ci left: 3.709884e-03	ci right 4.169082e-03	k: 1141	n:290000
ICOS   290000 perm   91 sec   (3202 perm/sec)   p_kst 3.934483e-03   p_cons 8.600690e-01   p_joint 1.960000e-02

Joint ci ratio: 5.054275e-02	ci left: 1.915961e-02	ci right 2.015637e-02	k: 5896	n:300000
Cons ci ratio: 2.887915e-03	ci left: 8.587298e-01	ci right 8.612166e-01	k: 257993	n:300000
KS ci ratio: 1.138908e-01	ci left: 3.709250e-03	ci right 4.160416e-03	k: 1179	n:300000
ICOS   300000 perm   95 sec   (3159 perm/sec)   p_kst 3.930000e-03   p_cons 8.599767e-01   p_joint 1.965333e-02

Joint ci ratio: 4.967335e-02	ci left: 1.920413e-02	ci right 2.018552e-02	k: 6104	n:310000
Cons ci ratio: 2.842657e-03	ci left: 8.586052e-01	ci right 8.610526e-01	k: 266548	n:310000
KS ci ratio: 1.121003e-01	ci left: 3.708713e-03	ci right 4.152253e-03	k: 1217	n:310000
ICOS   310000 perm   99 sec   (3117 perm/sec)   p_kst 3.925806e-03   p_cons 8.598323e-01   p_joint 1.969032e-02

Joint ci ratio: 4.880003e-02	ci left: 1.928305e-02	ci right 2.025067e-02	k: 6324	n:320000
Cons ci ratio: 2.798625e-03	ci left: 8.585609e-01	ci right 8.609701e-01	k: 275126	n:320000
KS ci ratio: 1.104801e-01	ci left: 3.702183e-03	ci right 4.138126e-03	k: 1253	n:320000
ICOS   320000 perm   104 sec   (3073 perm/sec)   p_kst 3.915625e-03   p_cons 8.597687e-01   p_joint 1.976250e-02

Joint ci ratio: 5.021297e-02	ci left: 1.767780e-02	ci right 1.859129e-02	k: 5983	n:330000
Cons ci ratio: 2.755330e-03	ci left: 8.586290e-01	ci right 8.610010e-01	k: 283740	n:330000
KS ci ratio: 1.091833e-01	ci left: 3.678405e-03	ci right 4.106137e-03	k: 1283	n:330000
ICOS   330000 perm   109 sec   (3031 perm/sec)   p_kst 3.887879e-03   p_cons 8.598182e-01   p_joint 1.813030e-02

Joint ci ratio: 4.749213e-02	ci left: 1.917737e-02	ci right 2.011319e-02	k: 6678	n:340000
Cons ci ratio: 2.714282e-03	ci left: 8.586668e-01	ci right 8.610035e-01	k: 292345	n:340000
KS ci ratio: 1.079724e-01	ci left: 3.653192e-03	ci right 4.072981e-03	k: 1312	n:340000
ICOS   340000 perm   114 sec   (2993 perm/sec)   p_kst 3.858824e-03   p_cons 8.598382e-01   p_joint 1.964118e-02

Joint ci ratio: 4.680681e-02	ci left: 1.918567e-02	ci right 2.010802e-02	k: 6875	n:350000
Cons ci ratio: 2.675300e-03	ci left: 8.586769e-01	ci right 8.609800e-01	k: 300941	n:350000
KS ci ratio: 1.064432e-01	ci left: 3.654475e-03	ci right 4.068092e-03	k: 1350	n:350000
ICOS   350000 perm   119 sec   (2950 perm/sec)   p_kst 3.857143e-03   p_cons 8.598314e-01   p_joint 1.964286e-02

Joint ci ratio: 4.619032e-02	ci left: 1.916065e-02	ci right 2.006933e-02	k: 7060	n:360000
Cons ci ratio: 2.636705e-03	ci left: 8.588009e-01	ci right 8.610711e-01	k: 309578	n:360000
KS ci ratio: 1.050531e-01	ci left: 3.650316e-03	ci right 4.057734e-03	k: 1386	n:360000
ICOS   360000 perm   124 sec   (2911 perm/sec)   p_kst 3.850000e-03   p_cons 8.599389e-01   p_joint 1.961111e-02

Joint ci ratio: 6.045636e-02	ci left: 1.089534e-02	ci right 1.157721e-02	k: 4156	n:370000
Cons ci ratio: 2.601016e-03	ci left: 8.587991e-01	ci right 8.610385e-01	k: 318171	n:370000
KS ci ratio: 1.037894e-01	ci left: 3.641150e-03	ci right 4.042357e-03	k: 1420	n:370000
ICOS   370000 perm   129 sec   (2875 perm/sec)   p_kst 3.837838e-03   p_cons 8.599216e-01   p_joint 1.123243e-02

Joint ci ratio: 5.974304e-02	ci left: 1.086782e-02	ci right 1.153966e-02	k: 4256	n:380000
Cons ci ratio: 2.565981e-03	ci left: 8.588689e-01	ci right 8.610782e-01	k: 326791	n:380000
KS ci ratio: 1.027120e-01	ci left: 3.622237e-03	ci right 4.016967e-03	k: 1450	n:380000
ICOS   380000 perm   134 sec   (2841 perm/sec)   p_kst 3.815789e-03   p_cons 8.599763e-01   p_joint 1.120000e-02

Joint ci ratio: 5.893822e-02	ci left: 1.088471e-02	ci right 1.154822e-02	k: 4373	n:390000
Cons ci ratio: 2.535155e-03	ci left: 8.586652e-01	ci right 8.608474e-01	k: 335306	n:390000
KS ci ratio: 1.014613e-01	ci left: 3.619310e-03	ci right 4.008632e-03	k: 1486	n:390000
ICOS   390000 perm   139 sec   (2802 perm/sec)   p_kst 3.810256e-03   p_cons 8.597590e-01   p_joint 1.121282e-02

Joint ci ratio: 6.617004e-02	ci left: 8.409602e-03	ci right 8.987549e-03	k: 3478	n:400000
Cons ci ratio: 2.502450e-03	ci left: 8.587578e-01	ci right 8.609120e-01	k: 343935	n:400000
KS ci ratio: 1.001234e-01	ci left: 3.626307e-03	ci right 4.010936e-03	k: 1526	n:400000
ICOS   400000 perm   145 sec   (2766 perm/sec)   p_kst 3.815000e-03   p_cons 8.598375e-01   p_joint 8.695000e-03

Joint ci ratio: 6.675035e-02	ci left: 8.062931e-03	ci right 8.622100e-03	k: 3419	n:410000
Cons ci ratio: 2.470252e-03	ci left: 8.589170e-01	ci right 8.610438e-01	k: 352593	n:410000
KS ci ratio: 9.867908e-02	ci left: 3.644890e-03	ci right 4.025590e-03	k: 1571	n:410000
ICOS   410000 perm   150 sec   (2731 perm/sec)   p_kst 3.831707e-03   p_cons 8.599829e-01   p_joint 8.339024e-03

Outputting figure to mutsig2_images.part000000000082/ICOS.2_620_410000_0.0038317_0.85998_0.008339.png
                gene_name: ICOS
               theta_stop: 0.099 
                    nperm: 410000 
                     p_ks: 0.0038 
        ci_ks_bounds_left: 0.0036 
       ci_ks_bounds_right: 0.0040 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.0083 
     ci_joint_bounds_left: 0.0081 
    ci_joint_bounds_right: 0.0086 

Current progress: 88 percent done.
IDH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.746117e-02	ci left: 5.127548e-01	ci right 5.324320e-01	k: 5226	n:10000
KS ci ratio: 3.355961e-02	ci left: 5.672458e-01	ci right 5.867093e-01	k: 5770	n:10000
IDH1   10000 perm   2 sec   (6396 perm/sec)   p_kst 5.770000e-01   p_cons 5.226000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000082/IDH1.2_1277_10000_0.577_0.5226_1.png
                gene_name: IDH1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
IDH3G
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.335044e-02	ci left: 3.411431e-01	ci right 3.599440e-01	k: 3505	n:10000
Cons ci ratio: 1.637446e-01	ci left: 4.974666e-02	ci right 5.871525e-02	k: 541	n:10000
KS ci ratio: 6.306242e-02	ci left: 2.698288e-01	ci right 2.875003e-01	k: 2786	n:10000
IDH3G   10000 perm   2 sec   (6195 perm/sec)   p_kst 2.786000e-01   p_cons 5.410000e-02   p_joint 3.505000e-01

Joint ci ratio: 3.750997e-02	ci left: 3.465228e-01	ci right 3.598199e-01	k: 7063	n:20000
Cons ci ratio: 1.133746e-01	ci left: 5.319383e-02	ci right 5.963589e-02	k: 1127	n:20000
KS ci ratio: 4.447595e-02	ci left: 2.734867e-01	ci right 2.859774e-01	k: 5594	n:20000
IDH3G   20000 perm   4 sec   (5433 perm/sec)   p_kst 2.797000e-01   p_cons 5.635000e-02   p_joint 3.531500e-01

Joint ci ratio: 3.058656e-02	ci left: 3.483538e-01	ci right 3.592078e-01	k: 10613	n:30000
Cons ci ratio: 9.134691e-02	ci left: 5.518553e-02	ci right 6.050050e-02	k: 1734	n:30000
KS ci ratio: 3.633406e-02	ci left: 2.744268e-01	ci right 2.846159e-01	k: 8385	n:30000
IDH3G   30000 perm   6 sec   (5145 perm/sec)   p_kst 2.795000e-01   p_cons 5.780000e-02   p_joint 3.537667e-01

Outputting figure to mutsig2_images.part000000000082/IDH3G.2_1297_30000_0.2795_0.0578_0.35377.png
                gene_name: IDH3G
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.058 
      ci_cons_bounds_left: 0.055 
     ci_cons_bounds_right: 0.061 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 92 percent done.
IDI2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.830549e-02	ci left: 3.021317e-01	ci right 3.203783e-01	k: 3112	n:10000
Cons ci ratio: 2.762719e-02	ci left: 6.587727e-01	ci right 6.773293e-01	k: 6681	n:10000
KS ci ratio: 1.520741e-01	ci left: 5.754436e-02	ci right 6.711256e-02	k: 622	n:10000
IDI2   10000 perm   1 sec   (6744 perm/sec)   p_kst 6.220000e-02   p_cons 6.681000e-01   p_joint 3.112000e-01

Joint ci ratio: 3.949137e-02	ci left: 3.234834e-01	ci right 3.365661e-01	k: 6600	n:20000
Cons ci ratio: 1.958237e-02	ci left: 6.604697e-01	ci right 6.735817e-01	k: 13341	n:20000
KS ci ratio: 1.075349e-01	ci left: 5.894035e-02	ci right 6.568759e-02	k: 1245	n:20000
IDI2   20000 perm   3 sec   (5763 perm/sec)   p_kst 6.225000e-02   p_cons 6.670500e-01   p_joint 3.300000e-01

Joint ci ratio: 2.083578e-02	ci left: 5.355742e-01	ci right 5.468844e-01	k: 16237	n:30000
Cons ci ratio: 1.600413e-02	ci left: 6.612662e-01	ci right 6.719681e-01	k: 19999	n:30000
KS ci ratio: 8.725616e-02	ci left: 6.027642e-02	ci right 6.580858e-02	k: 1890	n:30000
IDI2   30000 perm   6 sec   (5444 perm/sec)   p_kst 6.300000e-02   p_cons 6.666333e-01   p_joint 5.412333e-01

Outputting figure to mutsig2_images.part000000000082/IDI2.2_700_30000_0.063_0.66663_0.54123.png
                gene_name: IDI2
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.063 
        ci_ks_bounds_left: 0.060 
       ci_ks_bounds_right: 0.066 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.55 

Current progress: 94 percent done.
IDO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.015396e-01	ci left: 1.230758e-01	ci right 1.363408e-01	k: 1296	n:10000
Cons ci ratio: 1.601820e-01	ci left: 5.195823e-02	ci right 6.110226e-02	k: 564	n:10000
KS ci ratio: 2.166412e-01	ci left: 2.825837e-02	ci right 3.521793e-02	k: 316	n:10000
IDO1   10000 perm   2 sec   (6411 perm/sec)   p_kst 3.160000e-02   p_cons 5.640000e-02   p_joint 1.296000e-01

Joint ci ratio: 4.926436e-02	ci left: 2.344907e-01	ci right 2.463848e-01	k: 4808	n:20000
Cons ci ratio: 1.130563e-01	ci left: 5.348580e-02	ci right 5.994383e-02	k: 1133	n:20000
KS ci ratio: 1.540727e-01	ci left: 2.893010e-02	ci right 3.380740e-02	k: 626	n:20000
IDO1   20000 perm   4 sec   (5621 perm/sec)   p_kst 3.130000e-02   p_cons 5.665000e-02   p_joint 2.404000e-01

Joint ci ratio: 2.783650e-02	ci left: 3.923880e-01	ci right 4.034985e-01	k: 11938	n:30000
Cons ci ratio: 9.236837e-02	ci left: 5.401154e-02	ci right 5.927474e-02	k: 1698	n:30000
KS ci ratio: 1.259045e-01	ci left: 2.932611e-02	ci right 3.329867e-02	k: 938	n:30000
IDO1   30000 perm   6 sec   (5259 perm/sec)   p_kst 3.126667e-02   p_cons 5.660000e-02   p_joint 3.979333e-01

Joint ci ratio: 8.468290e-03	ci left: 8.390947e-01	ci right 8.462555e-01	k: 33708	n:40000
Cons ci ratio: 8.039571e-02	ci left: 5.384018e-02	ci right 5.837453e-02	k: 2243	n:40000
KS ci ratio: 1.072375e-01	ci left: 3.058895e-02	ci right 3.407937e-02	k: 1292	n:40000
IDO1   40000 perm   8 sec   (5027 perm/sec)   p_kst 3.230000e-02   p_cons 5.607500e-02   p_joint 8.427000e-01

Joint ci ratio: 7.839686e-05	ci left: 9.999262e-01	ci right 1	k: 50000	n:50000
Cons ci ratio: 7.178633e-02	ci left: 5.425610e-02	ci right 5.831561e-02	k: 2813	n:50000
KS ci ratio: 9.654309e-02	ci left: 3.037688e-02	ci right 3.347778e-02	k: 1595	n:50000
IDO1   50000 perm   10 sec   (4865 perm/sec)   p_kst 3.190000e-02   p_cons 5.626000e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000082/IDO1.2_1252_50000_0.0319_0.05626_1.png
                gene_name: IDO1
               theta_stop: 0.097 
                    nperm: 50000 
                     p_ks: 0.032 
        ci_ks_bounds_left: 0.030 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.056 
      ci_cons_bounds_left: 0.054 
     ci_cons_bounds_right: 0.058 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
IDO2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.873724e-02	ci left: 6.409613e-01	ci right 6.597510e-01	k: 6504	n:10000
Cons ci ratio: 6.909288e-02	ci left: 2.350148e-01	ci right 2.519349e-01	k: 2434	n:10000
KS ci ratio: 3.685760e-02	ci left: 5.208609e-01	ci right 5.405212e-01	k: 5307	n:10000
IDO2   10000 perm   2 sec   (6606 perm/sec)   p_kst 5.307000e-01   p_cons 2.434000e-01   p_joint 6.504000e-01

Outputting figure to mutsig2_images.part000000000082/IDO2.2_1307_10000_0.5307_0.2434_0.6504.png
                gene_name: IDO2
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 98 percent done.
IDUA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.111979e-01	ci left: 2.977507e-02	ci right 3.690017e-02	k: 332	n:10000
Cons ci ratio: 1.432065e-01	ci left: 6.468834e-02	ci right 7.476406e-02	k: 696	n:10000
KS ci ratio: 1.948389e-01	ci left: 3.509982e-02	ci right 4.277176e-02	k: 388	n:10000
IDUA   10000 perm   2 sec   (5850 perm/sec)   p_kst 3.880000e-02   p_cons 6.960000e-02   p_joint 3.320000e-02

Joint ci ratio: 2.338876e-01	ci left: 1.222918e-02	ci right 1.551439e-02	k: 276	n:20000
Cons ci ratio: 1.065354e-01	ci left: 6.001272e-02	ci right 6.681489e-02	k: 1267	n:20000
KS ci ratio: 1.362337e-01	ci left: 3.703607e-02	ci right 4.249877e-02	k: 794	n:20000
IDUA   20000 perm   4 sec   (5127 perm/sec)   p_kst 3.970000e-02   p_cons 6.335000e-02   p_joint 1.380000e-02

Joint ci ratio: 1.673200e-01	ci left: 1.646177e-02	ci right 1.949927e-02	k: 538	n:30000
Cons ci ratio: 8.662233e-02	ci left: 6.112543e-02	ci right 6.669272e-02	k: 1916	n:30000
KS ci ratio: 1.100160e-01	ci left: 3.836215e-02	ci right 4.286070e-02	k: 1217	n:30000
IDUA   30000 perm   6 sec   (4869 perm/sec)   p_kst 4.056667e-02   p_cons 6.386667e-02   p_joint 1.793333e-02

Joint ci ratio: 1.310612e-01	ci left: 2.043962e-02	ci right 2.333037e-02	k: 874	n:40000
Cons ci ratio: 7.531690e-02	ci left: 6.103123e-02	ci right 6.583239e-02	k: 2536	n:40000
KS ci ratio: 9.543020e-02	ci left: 3.854024e-02	ci right 4.242683e-02	k: 1618	n:40000
IDUA   40000 perm   8 sec   (4709 perm/sec)   p_kst 4.045000e-02   p_cons 6.340000e-02   p_joint 2.185000e-02

Joint ci ratio: 1.031746e-01	ci left: 2.661043e-02	ci right 2.952471e-02	k: 1402	n:50000
Cons ci ratio: 6.819893e-02	ci left: 5.986233e-02	ci right 6.410870e-02	k: 3098	n:50000
KS ci ratio: 8.532810e-02	ci left: 3.876925e-02	ci right 4.224435e-02	k: 2024	n:50000
IDUA   50000 perm   11 sec   (4591 perm/sec)   p_kst 4.048000e-02   p_cons 6.196000e-02   p_joint 2.804000e-02

Joint ci ratio: 1.052420e-01	ci left: 2.140934e-02	ci right 2.380381e-02	k: 1355	n:60000
Cons ci ratio: 6.251538e-02	ci left: 5.957416e-02	ci right 6.343505e-02	k: 3689	n:60000
KS ci ratio: 7.824670e-02	ci left: 3.857680e-02	ci right 4.173454e-02	k: 2408	n:60000
IDUA   60000 perm   13 sec   (4491 perm/sec)   p_kst 4.013333e-02   p_cons 6.148333e-02   p_joint 2.258333e-02

Joint ci ratio: 1.152531e-01	ci left: 1.531938e-02	ci right 1.720674e-02	k: 1137	n:70000
Cons ci ratio: 5.774240e-02	ci left: 5.998499e-02	ci right 6.356573e-02	k: 4323	n:70000
KS ci ratio: 7.206263e-02	ci left: 3.909372e-02	ci right 4.203023e-02	k: 2838	n:70000
IDUA   70000 perm   16 sec   (4402 perm/sec)   p_kst 4.054286e-02   p_cons 6.175714e-02   p_joint 1.624286e-02

Joint ci ratio: 1.048015e-01	ci left: 1.628599e-02	ci right 1.809927e-02	k: 1374	n:80000
Cons ci ratio: 5.398817e-02	ci left: 6.015343e-02	ci right 6.350343e-02	k: 4945	n:80000
KS ci ratio: 6.796240e-02	ci left: 3.856648e-02	ci right 4.129202e-02	k: 3193	n:80000
IDUA   80000 perm   19 sec   (4314 perm/sec)   p_kst 3.991250e-02   p_cons 6.181250e-02   p_joint 1.717500e-02

Joint ci ratio: 9.873887e-02	ci left: 1.636061e-02	ci right 1.807071e-02	k: 1548	n:90000
Cons ci ratio: 5.094571e-02	ci left: 6.014761e-02	ci right 6.330293e-02	k: 5554	n:90000
KS ci ratio: 6.434889e-02	ci left: 3.832427e-02	ci right 4.088329e-02	k: 3563	n:90000
IDUA   90000 perm   21 sec   (4220 perm/sec)   p_kst 3.958889e-02   p_cons 6.171111e-02   p_joint 1.720000e-02

Outputting figure to mutsig2_images.part000000000082/IDUA.2_2018_90000_0.039589_0.061711_0.0172.png
                gene_name: IDUA
               theta_stop: 0.099 
                    nperm: 90000 
                     p_ks: 0.040 
        ci_ks_bounds_left: 0.038 
       ci_ks_bounds_right: 0.041 
                   p_cons: 0.062 
      ci_cons_bounds_left: 0.060 
     ci_cons_bounds_right: 0.063 
                  p_joint: 0.017 
     ci_joint_bounds_left: 0.016 
    ci_joint_bounds_right: 0.018 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000082
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 82 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1653>
Subject: Job 8004175: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1653>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000083> was used as the working directory.
Started at Sun Nov 11 15:06:52 2012
Results reported at Sun Nov 11 18:10:14 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000083.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000083.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 83  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000083.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  11183.89 sec.
    Max Memory :      4746 MB
    Max Swap   :      7126 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
83
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 83
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 83: processing genes 7420 - 7509
Calculating significance of each gene.
Using projection method.
7420	IFI27L1	1
7421	IFI27L2	1
7422	IFI30	1
7423	IFI35	1
7424	IFI44	1
7425	IFI44L	9.214197e-03
7426	IFI6	1
7427	IFIH1	1
7428	IFIT1	1
7429	IFIT1B	8.066994e-01
7430	IFIT2	4.480406e-01
7431	IFIT3	8.174223e-01
7432	IFIT5	8.532761e-01
7433	IFITM1	1
7434	IFITM2	1
7435	IFITM3	1
7436	IFITM5	1
7437	IFLTD1	1
7438	IFNA1	4.414262e-01
7439	IFNA10	1.582816e-01
7440	IFNA13	1
7441	IFNA14	1.255085e-01
7442	IFNA16	8.860690e-02
7443	IFNA17	3.257991e-01
7444	IFNA2	1
7445	IFNA21	1
7446	IFNA4	3.430606e-01
7447	IFNA5	1
7448	IFNA6	4.959374e-01
7449	IFNA7	5.502533e-01
7450	IFNA8	1.594941e-01
7451	IFNAR1	6.793013e-01
7452	IFNAR2	1
7453	IFNB1	2.076010e-01
7454	IFNE	2.530373e-01
7455	IFNG	2.159584e-01
7456	IFNGR1	2.194163e-01
7457	IFNGR2	4.957084e-01
7458	IFNK	1
7459	IFNW1	1
7460	IFRD1	1
7461	IFRD2	1
7462	IFT122	9.880367e-01
7463	IFT140	9.714211e-01
7464	IFT172	9.009722e-01
7465	IFT20	2.025165e-01
7466	IFT27	2.834965e-01
7467	IFT46	1
7468	IFT52	1.013348e-01
7469	IFT57	3.770661e-01
7470	IFT74	8.042538e-01
7471	IFT80	2.655831e-01
7472	IFT81	9.059099e-02
7473	IFT88	6.560743e-01
7474	IGBP1	4.134430e-01
7475	IGDCC3	3.272460e-01
7476	IGDCC4	6.281241e-01
7477	IGF1	9.204603e-02
7478	IGF1R	9.918447e-01
7479	IGF2	4.151796e-01
7480	IGF2BP1	4.730573e-01
7481	IGF2BP2	4.599026e-01
7482	IGF2BP3	1
7483	IGF2R	8.943750e-01
7484	IGFALS	1
7485	IGFBP1	1
7486	IGFBP2	1
7487	IGFBP3	1.813687e-01
7488	IGFBP4	1
7489	IGFBP5	1
7490	IGFBP6	9.635131e-02
7491	IGFBP7	1.675041e-01
7492	IGFBPL1	1
7493	IGFL1	2.021633e-01
7494	IGFL2	4.809510e-01
7495	IGFL3	8.526998e-02
7496	IGFL4	1
7497	IGHMBP2	1.993802e-01
7498	IGJ	5.279225e-01
7499	IGLL1	1.248587e-01
7500	IGLL5	1
7501	IGLON5	4.998816e-01
7502	IGSF1	3.129817e-01
7503	IGSF10	9.973791e-01
7504	IGSF11	5.158789e-01
7505	IGSF21	1
7506	IGSF22	5.739684e-01
7507	IGSF3	8.318987e-01
7508	IGSF5	4.461197e-01
7509	IGSF6	2.328730e-01
Done

Running MutSig 2:
Scatter job 83: processing genes 7420 - 7509
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
IGF2R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.841575e-02	ci left: 6.460919e-01	ci right 6.648174e-01	k: 6555	n:10000
Cons ci ratio: 5.076980e-02	ci left: 3.639075e-01	ci right 3.829663e-01	k: 3734	n:10000
KS ci ratio: 2.092792e-02	ci left: 7.699268e-01	ci right 7.863109e-01	k: 7782	n:10000
IGF2R   10000 perm   3 sec   (3697 perm/sec)   p_kst 7.782000e-01   p_cons 3.734000e-01   p_joint 6.555000e-01

Outputting figure to mutsig2_images.part000000000083/IGF2R.10_7668_10000_0.7782_0.3734_0.6555.png
                gene_name: IGF2R
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.66 

Current progress: 2 percent done.
IGSF11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.612326e-02	ci left: 4.096033e-01	ci right 4.290437e-01	k: 4193	n:10000
Cons ci ratio: 3.187005e-02	ci left: 5.923277e-01	ci right 6.116129e-01	k: 6020	n:10000
KS ci ratio: 6.623483e-02	ci left: 2.507315e-01	ci right 2.680089e-01	k: 2593	n:10000
IGSF11   10000 perm   2 sec   (5928 perm/sec)   p_kst 2.593000e-01   p_cons 6.020000e-01   p_joint 4.193000e-01

Outputting figure to mutsig2_images.part000000000083/IGSF11.8_1377_10000_0.2593_0.602_0.4193.png
                gene_name: IGSF11
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 5 percent done.
IGHMBP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.312124e-02	ci left: 8.932351e-01	ci right 9.051312e-01	k: 8993	n:10000
Cons ci ratio: 1.028188e-02	ci left: 9.307143e-01	ci right 9.404301e-01	k: 9357	n:10000
KS ci ratio: 2.698187e-02	ci left: 6.692450e-01	ci right 6.876510e-01	k: 6785	n:10000
IGHMBP2   10000 perm   2 sec   (5160 perm/sec)   p_kst 6.785000e-01   p_cons 9.357000e-01   p_joint 8.993000e-01

Outputting figure to mutsig2_images.part000000000083/IGHMBP2.7_3042_10000_0.6785_0.9357_0.8993.png
                gene_name: IGHMBP2
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.91 

Current progress: 8 percent done.
IGSF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.755134e-02	ci left: 5.115541e-01	ci right 5.312334e-01	k: 5214	n:10000
Cons ci ratio: 4.358455e-02	ci left: 4.373218e-01	ci right 4.569090e-01	k: 4471	n:10000
KS ci ratio: 5.710380e-02	ci left: 3.110592e-01	ci right 3.294457e-01	k: 3202	n:10000
IGSF1   10000 perm   2 sec   (4451 perm/sec)   p_kst 3.202000e-01   p_cons 4.471000e-01   p_joint 5.214000e-01

Outputting figure to mutsig2_images.part000000000083/IGSF1.7_4164_10000_0.3202_0.4471_0.5214.png
                gene_name: IGSF1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 10 percent done.
IFI44L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.700192e-02	ci left: 2.463807e-01	ci right 2.635622e-01	k: 2549	n:10000
Cons ci ratio: 9.247904e-02	ci left: 1.452116e-01	ci right 1.593916e-01	k: 1522	n:10000
KS ci ratio: 5.694681e-02	ci left: 3.122498e-01	ci right 3.306543e-01	k: 3214	n:10000
IFI44L   10000 perm   2 sec   (5771 perm/sec)   p_kst 3.214000e-01   p_cons 1.522000e-01   p_joint 2.549000e-01

Outputting figure to mutsig2_images.part000000000083/IFI44L.6_1391_10000_0.3214_0.1522_0.2549.png
                gene_name: IFI44L
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 12 percent done.
IFT81
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.338274e-01	ci left: 1.133070e-02	ci right 1.595903e-02	k: 135	n:10000
Cons ci ratio: 2.195183e-01	ci left: 2.750089e-02	ci right 3.437595e-02	k: 308	n:10000
KS ci ratio: 7.649036e-02	ci left: 1.999823e-01	ci right 2.159882e-01	k: 2079	n:10000
IFT81   10000 perm   2 sec   (5621 perm/sec)   p_kst 2.079000e-01   p_cons 3.080000e-02   p_joint 1.350000e-02

Joint ci ratio: 1.565382e-01	ci left: 2.801598e-02	ci right 3.282183e-02	k: 607	n:20000
Cons ci ratio: 1.588432e-01	ci left: 2.719860e-02	ci right 3.193948e-02	k: 590	n:20000
KS ci ratio: 5.353551e-02	ci left: 2.057091e-01	ci right 2.170749e-01	k: 4227	n:20000
IFT81   20000 perm   4 sec   (5074 perm/sec)   p_kst 2.113500e-01   p_cons 2.950000e-02   p_joint 3.035000e-02

Joint ci ratio: 1.154059e-01	ci left: 3.489227e-02	ci right 3.919799e-02	k: 1110	n:30000
Cons ci ratio: 1.301125e-01	ci left: 2.745293e-02	ci right 3.130560e-02	k: 880	n:30000
KS ci ratio: 4.375985e-02	ci left: 2.063944e-01	ci right 2.156616e-01	k: 6330	n:30000
IFT81   30000 perm   6 sec   (4803 perm/sec)   p_kst 2.110000e-01   p_cons 2.933333e-02   p_joint 3.700000e-02

Joint ci ratio: 1.039980e-01	ci left: 3.251345e-02	ci right 3.610457e-02	k: 1371	n:40000
Cons ci ratio: 1.120764e-01	ci left: 2.800947e-02	ci right 3.135927e-02	k: 1186	n:40000
KS ci ratio: 3.790386e-02	ci left: 2.069604e-01	ci right 2.149816e-01	k: 8438	n:40000
IFT81   40000 perm   9 sec   (4673 perm/sec)   p_kst 2.109500e-01   p_cons 2.965000e-02   p_joint 3.427500e-02

Joint ci ratio: 9.167130e-02	ci left: 3.366040e-02	ci right 3.691384e-02	k: 1763	n:50000
Cons ci ratio: 1.009034e-01	ci left: 2.781965e-02	ci right 3.079534e-02	k: 1464	n:50000
KS ci ratio: 3.375381e-02	ci left: 2.088416e-01	ci right 2.160318e-01	k: 10621	n:50000
IFT81   50000 perm   11 sec   (4564 perm/sec)   p_kst 2.124200e-01   p_cons 2.928000e-02   p_joint 3.526000e-02

Joint ci ratio: 9.531541e-02	ci left: 2.610835e-02	ci right 2.873763e-02	k: 1644	n:60000
Cons ci ratio: 9.282141e-02	ci left: 2.752516e-02	ci right 3.022067e-02	k: 1731	n:60000
KS ci ratio: 3.089662e-02	ci left: 2.082547e-01	ci right 2.148066e-01	k: 12691	n:60000
IFT81   60000 perm   14 sec   (4428 perm/sec)   p_kst 2.115167e-01   p_cons 2.885000e-02   p_joint 2.740000e-02

Outputting figure to mutsig2_images.part000000000083/IFT81.6_2215_60000_0.21152_0.02885_0.0274.png
                gene_name: IFT81
               theta_stop: 0.095 
                    nperm: 60000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.029 
      ci_cons_bounds_left: 0.028 
     ci_cons_bounds_right: 0.030 
                  p_joint: 0.027 
     ci_joint_bounds_left: 0.026 
    ci_joint_bounds_right: 0.029 

Current progress: 15 percent done.
IGDCC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.301540e-02	ci left: 2.701258e-01	ci right 2.878031e-01	k: 2789	n:10000
Cons ci ratio: 3.690941e-02	ci left: 5.201603e-01	ci right 5.398222e-01	k: 5300	n:10000
KS ci ratio: 1.125939e-01	ci left: 1.019814e-01	ci right 1.142479e-01	k: 1080	n:10000
IGDCC4   10000 perm   2 sec   (4600 perm/sec)   p_kst 1.080000e-01   p_cons 5.300000e-01   p_joint 2.789000e-01

Joint ci ratio: 6.203928e-02	ci left: 1.612127e-01	ci right 1.715844e-01	k: 3327	n:20000
Cons ci ratio: 2.551452e-02	ci left: 5.343636e-01	ci right 5.482244e-01	k: 10826	n:20000
KS ci ratio: 8.260454e-02	ci left: 9.700431e-02	ci right 1.054120e-01	k: 2023	n:20000
IGDCC4   20000 perm   5 sec   (4303 perm/sec)   p_kst 1.011500e-01   p_cons 5.413000e-01   p_joint 1.663500e-01

Outputting figure to mutsig2_images.part000000000083/IGDCC4.6_3833_20000_0.10115_0.5413_0.16635.png
                gene_name: IGDCC4
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.097 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 18 percent done.
IGSF10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.758343e-02	ci left: 3.945608e-01	ci right 4.138950e-01	k: 4042	n:10000
Cons ci ratio: 9.825754e-02	ci left: 1.305129e-01	ci right 1.440991e-01	k: 1372	n:10000
KS ci ratio: 4.298147e-02	ci left: 4.442063e-01	ci right 4.638205e-01	k: 4540	n:10000
IGSF10   10000 perm   3 sec   (3891 perm/sec)   p_kst 4.540000e-01   p_cons 1.372000e-01   p_joint 4.042000e-01

Outputting figure to mutsig2_images.part000000000083/IGSF10.6_7944_10000_0.454_0.1372_0.4042.png
                gene_name: IGSF10
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 20 percent done.
IFT172
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.887410e-02	ci left: 4.942505e-01	ci right 5.139471e-01	k: 5041	n:10000
KS ci ratio: 1.394590e-02	ci left: 8.813485e-01	ci right 8.938247e-01	k: 8877	n:10000
IFT172   10000 perm   2 sec   (4500 perm/sec)   p_kst 8.877000e-01   p_cons 5.041000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000083/IFT172.5_5442_10000_0.8877_0.5041_1.png
                gene_name: IFT172
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 22 percent done.
IGSF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.066151e-02	ci left: 3.649021e-01	ci right 3.839711e-01	k: 3744	n:10000
Cons ci ratio: 4.846382e-02	ci left: 3.857986e-01	ci right 4.050623e-01	k: 3954	n:10000
KS ci ratio: 6.453735e-02	ci left: 2.607228e-01	ci right 2.782117e-01	k: 2694	n:10000
IGSF3   10000 perm   3 sec   (3409 perm/sec)   p_kst 2.694000e-01   p_cons 3.954000e-01   p_joint 3.744000e-01

Outputting figure to mutsig2_images.part000000000083/IGSF3.5_3689_10000_0.2694_0.3954_0.3744.png
                gene_name: IGSF3
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 25 percent done.
IFI44
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.494614e-02	ci left: 2.066861e-01	ci right 2.228804e-01	k: 2147	n:10000
Cons ci ratio: 1.120715e-01	ci left: 1.028590e-01	ci right 1.151698e-01	k: 1089	n:10000
KS ci ratio: 5.915936e-02	ci left: 2.959840e-01	ci right 3.141297e-01	k: 3050	n:10000
IFI44   10000 perm   2 sec   (6295 perm/sec)   p_kst 3.050000e-01   p_cons 1.089000e-01   p_joint 2.147000e-01

Joint ci ratio: 5.514369e-02	ci left: 1.961080e-01	ci right 2.072789e-01	k: 4033	n:20000
Cons ci ratio: 7.866204e-02	ci left: 1.060886e-01	ci right 1.148250e-01	k: 2208	n:20000
KS ci ratio: 4.161119e-02	ci left: 3.009092e-01	ci right 3.137469e-01	k: 6146	n:20000
IFI44   20000 perm   4 sec   (4786 perm/sec)   p_kst 3.073000e-01   p_cons 1.104000e-01   p_joint 2.016500e-01

Outputting figure to mutsig2_images.part000000000083/IFI44.4_1367_20000_0.3073_0.1104_0.20165.png
                gene_name: IFI44
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 28 percent done.
IFIH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.664240e-02	ci left: 6.747853e-01	ci right 6.931075e-01	k: 6840	n:10000
KS ci ratio: 2.261969e-02	ci left: 7.415933e-01	ci right 7.586608e-01	k: 7502	n:10000
IFIH1   10000 perm   2 sec   (4276 perm/sec)   p_kst 7.502000e-01   p_cons 6.840000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000083/IFIH1.4_3142_10000_0.7502_0.684_1.png
                gene_name: IFIH1
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 30 percent done.
IFNGR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.868672e-02	ci left: 6.417660e-01	ci right 6.605459e-01	k: 6512	n:10000
Cons ci ratio: 6.951078e-03	ci left: 9.660453e-01	ci right 9.728776e-01	k: 9696	n:10000
KS ci ratio: 3.757392e-02	ci left: 5.112540e-01	ci right 5.309337e-01	k: 5211	n:10000
IFNGR1   10000 perm   2 sec   (5120 perm/sec)   p_kst 5.211000e-01   p_cons 9.696000e-01   p_joint 6.512000e-01

Outputting figure to mutsig2_images.part000000000083/IFNGR1.4_1498_10000_0.5211_0.9696_0.6512.png
                gene_name: IFNGR1
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 32 percent done.
IFT122
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.855114e-02	ci left: 3.003467e-01	ci right 3.185644e-01	k: 3094	n:10000
Cons ci ratio: 5.371559e-02	ci left: 3.380633e-01	ci right 3.568256e-01	k: 3474	n:10000
KS ci ratio: 8.866392e-02	ci left: 1.562022e-01	ci right 1.707944e-01	k: 1634	n:10000
IFT122   10000 perm   2 sec   (4646 perm/sec)   p_kst 1.634000e-01   p_cons 3.474000e-01   p_joint 3.094000e-01

Outputting figure to mutsig2_images.part000000000083/IFT122.4_4006_10000_0.1634_0.3474_0.3094.png
                gene_name: IFT122
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 35 percent done.
IFT140
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.728151e-02	ci left: 8.299179e-01	ci right 8.444851e-01	k: 8373	n:10000
Cons ci ratio: 6.178537e-02	ci left: 2.780479e-01	ci right 2.958764e-01	k: 2869	n:10000
KS ci ratio: 2.066714e-02	ci left: 7.742826e-01	ci right 7.905526e-01	k: 7825	n:10000
IFT140   10000 perm   2 sec   (4763 perm/sec)   p_kst 7.825000e-01   p_cons 2.869000e-01   p_joint 8.373000e-01

Outputting figure to mutsig2_images.part000000000083/IFT140.4_4505_10000_0.7825_0.2869_0.8373.png
                gene_name: IFT140
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 38 percent done.
IFT52
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.923248e-02	ci left: 3.783335e-01	ci right 3.975319e-01	k: 3879	n:10000
Cons ci ratio: 1.298648e-01	ci left: 7.805288e-02	ci right 8.899118e-02	k: 834	n:10000
KS ci ratio: 1.658537e-02	ci left: 8.410158e-01	ci right 8.551807e-01	k: 8482	n:10000
IFT52   10000 perm   2 sec   (4054 perm/sec)   p_kst 8.482000e-01   p_cons 8.340000e-02   p_joint 3.879000e-01

Joint ci ratio: 2.976525e-02	ci left: 4.574687e-01	ci right 4.713417e-01	k: 9288	n:20000
Cons ci ratio: 9.345775e-02	ci left: 7.705916e-02	ci right 8.466322e-02	k: 1616	n:20000
KS ci ratio: 1.094426e-02	ci left: 8.603382e-01	ci right 8.698554e-01	k: 17303	n:20000
IFT52   20000 perm   5 sec   (4393 perm/sec)   p_kst 8.651500e-01   p_cons 8.080000e-02   p_joint 4.644000e-01

Outputting figure to mutsig2_images.part000000000083/IFT52.4_1366_20000_0.86515_0.0808_0.4644.png
                gene_name: IFT52
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.081 
      ci_cons_bounds_left: 0.077 
     ci_cons_bounds_right: 0.085 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.47 

Current progress: 40 percent done.
IFT80
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.454299e-02	ci left: 3.312097e-01	ci right 3.498832e-01	k: 3405	n:10000
Cons ci ratio: 9.438752e-02	ci left: 1.401132e-01	ci right 1.540931e-01	k: 1470	n:10000
KS ci ratio: 5.654465e-02	ci left: 3.153259e-01	ci right 3.337764e-01	k: 3245	n:10000
IFT80   10000 perm   2 sec   (5521 perm/sec)   p_kst 3.245000e-01   p_cons 1.470000e-01   p_joint 3.405000e-01

Outputting figure to mutsig2_images.part000000000083/IFT80.4_2410_10000_0.3245_0.147_0.3405.png
                gene_name: IFT80
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 42 percent done.
IGDCC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.344587e-02	ci left: 2.134918e-01	ci right 2.298706e-01	k: 2216	n:10000
Cons ci ratio: 1.158652e-01	ci left: 9.671912e-02	ci right 1.087134e-01	k: 1026	n:10000
KS ci ratio: 6.210389e-02	ci left: 2.759680e-01	ci right 2.937575e-01	k: 2848	n:10000
IGDCC3   10000 perm   2 sec   (5596 perm/sec)   p_kst 2.848000e-01   p_cons 1.026000e-01   p_joint 2.216000e-01

Joint ci ratio: 6.003736e-02	ci left: 1.703988e-01	ci right 1.809957e-01	k: 3513	n:20000
Cons ci ratio: 8.333946e-02	ci left: 9.543404e-02	ci right 1.037828e-01	k: 1991	n:20000
KS ci ratio: 4.416894e-02	ci left: 2.762674e-01	ci right 2.887959e-01	k: 5650	n:20000
IGDCC3   20000 perm   4 sec   (5037 perm/sec)   p_kst 2.825000e-01   p_cons 9.955000e-02   p_joint 1.756500e-01

Outputting figure to mutsig2_images.part000000000083/IGDCC3.4_2501_20000_0.2825_0.09955_0.17565.png
                gene_name: IGDCC3
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.100 
      ci_cons_bounds_left: 0.095 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 45 percent done.
IGSF21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.798081e-02	ci left: 3.905776e-01	ci right 4.098806e-01	k: 4002	n:10000
Cons ci ratio: 8.299120e-02	ci left: 1.747761e-01	ci right 1.900094e-01	k: 1823	n:10000
KS ci ratio: 2.777056e-02	ci left: 6.564574e-01	ci right 6.750460e-01	k: 6658	n:10000
IGSF21   10000 perm   2 sec   (5816 perm/sec)   p_kst 6.658000e-01   p_cons 1.823000e-01   p_joint 4.002000e-01

Outputting figure to mutsig2_images.part000000000083/IGSF21.4_1444_10000_0.6658_0.1823_0.4002.png
                gene_name: IGSF21
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 48 percent done.
IGSF22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.969865e-02	ci left: 7.904003e-01	ci right 8.062255e-01	k: 7984	n:10000
Cons ci ratio: 4.851453e-02	ci left: 3.853009e-01	ci right 4.045604e-01	k: 3949	n:10000
KS ci ratio: 2.501509e-02	ci left: 7.016014e-01	ci right 7.194758e-01	k: 7106	n:10000
IGSF22   10000 perm   2 sec   (5278 perm/sec)   p_kst 7.106000e-01   p_cons 3.949000e-01   p_joint 7.984000e-01

Outputting figure to mutsig2_images.part000000000083/IGSF22.4_4069_10000_0.7106_0.3949_0.7984.png
                gene_name: IGSF22
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 50 percent done.
IFNA10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.160103e-01	ci left: 6.974044e-03	ci right 1.072050e-02	k: 87	n:10000
Cons ci ratio: 3.501845e-02	ci left: 5.462969e-01	ci right 5.658704e-01	k: 5561	n:10000
KS ci ratio: 2.262761e+00	ci left: 2.422185e-05	ci right 7.222801e-04	k: 2	n:10000
IFNA10   10000 perm   2 sec   (6616 perm/sec)   p_kst 2.000000e-04   p_cons 5.561000e-01   p_joint 8.700000e-03

Joint ci ratio: 5.592997e-01	ci left: 1.770085e-03	ci right 3.180807e-03	k: 48	n:20000
Cons ci ratio: 2.464821e-02	ci left: 5.514848e-01	ci right 5.652982e-01	k: 11168	n:20000
KS ci ratio: 1.959755e+00	ci left: 3.093467e-05	ci right 4.383005e-04	k: 3	n:20000
IFNA10   20000 perm   3 sec   (5872 perm/sec)   p_kst 1.500000e-04   p_cons 5.584000e-01   p_joint 2.400000e-03

Joint ci ratio: 5.539003e-01	ci left: 1.208586e-03	ci right 2.158785e-03	k: 49	n:30000
Cons ci ratio: 2.019916e-02	ci left: 5.509565e-01	ci right 5.622325e-01	k: 16698	n:30000
KS ci ratio: 1.600147e+00	ci left: 5.411836e-05	ci right 3.889012e-04	k: 5	n:30000
IFNA10   30000 perm   5 sec   (5603 perm/sec)   p_kst 1.666667e-04   p_cons 5.566000e-01   p_joint 1.633333e-03

Joint ci ratio: 5.432460e-01	ci left: 9.494640e-04	ci right 1.676053e-03	k: 51	n:40000
Cons ci ratio: 1.750735e-02	ci left: 5.513147e-01	ci right 5.610771e-01	k: 22248	n:40000
KS ci ratio: 1.600193e+00	ci left: 4.058837e-05	ci right 2.916840e-04	k: 5	n:40000
IFNA10   40000 perm   7 sec   (5429 perm/sec)   p_kst 1.250000e-04   p_cons 5.562000e-01   p_joint 1.275000e-03

Joint ci ratio: 5.057610e-01	ci left: 8.983883e-04	ci right 1.521854e-03	k: 59	n:50000
Cons ci ratio: 1.569534e-02	ci left: 5.506909e-01	ci right 5.594227e-01	k: 27753	n:50000
KS ci ratio: 1.600221e+00	ci left: 3.247050e-05	ci right 2.333511e-04	k: 5	n:50000
IFNA10   50000 perm   9 sec   (5289 perm/sec)   p_kst 1.000000e-04   p_cons 5.550600e-01   p_joint 1.180000e-03

Joint ci ratio: 3.919935e+00	ci left: 0	ci right 6.147943e-05	k: 0	n:60000
Cons ci ratio: 1.498545e-02	ci left: 5.287980e-01	ci right 5.367988e-01	k: 31968	n:60000
KS ci ratio: 2.771789e+00	ci left: 4.219634e-07	ci right 9.285719e-05	k: 1	n:60000
IFNA10   60000 perm   12 sec   (5170 perm/sec)   p_kst 1.666667e-05   p_cons 5.328000e-01   p_joint 0

Joint ci ratio: 5.907723e-01	ci left: 4.445962e-04	ci right 8.273506e-04	k: 43	n:70000
Cons ci ratio: 1.387109e-02	ci left: 5.291956e-01	ci right 5.366017e-01	k: 37303	n:70000
KS ci ratio: 2.263148e+00	ci left: 3.460151e-06	ci right 1.032060e-04	k: 2	n:70000
IFNA10   70000 perm   14 sec   (5064 perm/sec)   p_kst 2.857143e-05   p_cons 5.329000e-01   p_joint 6.142857e-04

Joint ci ratio: 6.196476e-01	ci left: 3.466824e-04	ci right 6.663689e-04	k: 39	n:80000
Cons ci ratio: 1.299611e-02	ci left: 5.286350e-01	ci right 5.355626e-01	k: 42568	n:80000
KS ci ratio: 1.959939e+00	ci left: 7.733468e-06	ci right 1.095870e-04	k: 3	n:80000
IFNA10   80000 perm   16 sec   (4957 perm/sec)   p_kst 3.750000e-05   p_cons 5.321000e-01   p_joint 4.875000e-04

Joint ci ratio: 6.120583e-01	ci left: 3.175360e-04	ci right 6.051585e-04	k: 40	n:90000
Cons ci ratio: 1.226354e-02	ci left: 5.284001e-01	ci right 5.349312e-01	k: 47850	n:90000
KS ci ratio: 1.753019e+00	ci left: 1.210974e-05	ci right 1.137915e-04	k: 4	n:90000
IFNA10   90000 perm   19 sec   (4857 perm/sec)   p_kst 4.444444e-05   p_cons 5.316667e-01   p_joint 4.444444e-04

Joint ci ratio: 6.047391e-01	ci left: 2.942386e-04	ci right 5.561706e-04	k: 41	n:100000
Cons ci ratio: 1.163323e-02	ci left: 5.286114e-01	ci right 5.348068e-01	k: 53171	n:100000
KS ci ratio: 1.753025e+00	ci left: 1.089876e-05	ci right 1.024127e-04	k: 4	n:100000
IFNA10   100000 perm   21 sec   (4759 perm/sec)   p_kst 4.000000e-05   p_cons 5.317100e-01   p_joint 4.100000e-04

Joint ci ratio: 5.908413e-01	ci left: 2.829168e-04	ci right 5.265163e-04	k: 43	n:110000
Cons ci ratio: 1.108783e-02	ci left: 5.289368e-01	ci right 5.348433e-01	k: 58508	n:110000
KS ci ratio: 1.481567e+00	ci left: 2.001748e-05	ci right 1.187187e-04	k: 6	n:110000
IFNA10   110000 perm   24 sec   (4667 perm/sec)   p_kst 5.454545e-05   p_cons 5.318909e-01   p_joint 3.909091e-04

Joint ci ratio: 6.358046e-01	ci left: 2.171041e-04	ci right 4.249721e-04	k: 37	n:120000
Cons ci ratio: 1.060477e-02	ci left: 5.295804e-01	ci right 5.352347e-01	k: 63889	n:120000
KS ci ratio: 1.481571e+00	ci left: 1.834933e-05	ci right 1.088257e-04	k: 6	n:120000
IFNA10   120000 perm   26 sec   (4577 perm/sec)   p_kst 5.000000e-05   p_cons 5.324083e-01   p_joint 3.083333e-04

Joint ci ratio: 6.121022e-01	ci left: 2.198287e-04	ci right 4.189663e-04	k: 40	n:130000
Cons ci ratio: 1.018514e-02	ci left: 5.298679e-01	ci right 5.352999e-01	k: 69236	n:130000
KS ci ratio: 1.481575e+00	ci left: 1.693783e-05	ci right 1.004548e-04	k: 6	n:130000
IFNA10   130000 perm   29 sec   (4499 perm/sec)   p_kst 4.615385e-05   p_cons 5.325846e-01   p_joint 3.076923e-04

Joint ci ratio: 6.358194e-01	ci left: 1.860881e-04	ci right 3.642648e-04	k: 37	n:140000
Cons ci ratio: 9.808861e-03	ci left: 5.302609e-01	ci right 5.354949e-01	k: 74603	n:140000
KS ci ratio: 1.481578e+00	ci left: 1.572797e-05	ci right 9.327961e-05	k: 6	n:140000
IFNA10   140000 perm   32 sec   (4425 perm/sec)   p_kst 4.285714e-05   p_cons 5.328786e-01   p_joint 2.642857e-04

Joint ci ratio: 6.276187e-01	ci left: 1.792798e-04	ci right 3.477034e-04	k: 38	n:150000
Cons ci ratio: 9.468374e-03	ci left: 5.307647e-01	ci right 5.358207e-01	k: 79994	n:150000
KS ci ratio: 1.481581e+00	ci left: 1.467943e-05	ci right 8.706111e-05	k: 6	n:150000
IFNA10   150000 perm   34 sec   (4352 perm/sec)   p_kst 4.000000e-05   p_cons 5.332933e-01   p_joint 2.533333e-04

Joint ci ratio: 6.121208e-01	ci left: 1.786095e-04	ci right 3.404137e-04	k: 40	n:160000
Cons ci ratio: 9.162878e-03	ci left: 5.311081e-01	ci right 5.360032e-01	k: 85369	n:160000
KS ci ratio: 1.481584e+00	ci left: 1.376196e-05	ci right 8.161991e-05	k: 6	n:160000
IFNA10   160000 perm   37 sec   (4284 perm/sec)   p_kst 3.750000e-05   p_cons 5.335562e-01   p_joint 2.500000e-04

Joint ci ratio: 6.443720e-01	ci left: 1.483217e-04	ci right 2.931597e-04	k: 36	n:170000
Cons ci ratio: 8.888100e-03	ci left: 5.312486e-01	ci right 5.359973e-01	k: 90716	n:170000
KS ci ratio: 1.481586e+00	ci left: 1.295243e-05	ci right 7.681884e-05	k: 6	n:170000
IFNA10   170000 perm   40 sec   (4216 perm/sec)   p_kst 3.529412e-05   p_cons 5.336235e-01   p_joint 2.117647e-04

Joint ci ratio: 6.358391e-01	ci left: 1.447341e-04	ci right 2.833202e-04	k: 37	n:180000
Cons ci ratio: 8.641565e-03	ci left: 5.310920e-01	ci right 5.357069e-01	k: 96012	n:180000
KS ci ratio: 1.481588e+00	ci left: 1.223284e-05	ci right 7.255121e-05	k: 6	n:180000
IFNA10   180000 perm   43 sec   (4148 perm/sec)   p_kst 3.333333e-05   p_cons 5.334000e-01   p_joint 2.055556e-04

Joint ci ratio: 6.625382e-01	ci left: 1.239293e-04	ci right 2.500521e-04	k: 34	n:190000
Cons ci ratio: 8.411796e-03	ci left: 5.311115e-01	ci right 5.356032e-01	k: 101338	n:190000
KS ci ratio: 1.481590e+00	ci left: 1.158900e-05	ci right 6.873280e-05	k: 6	n:190000
IFNA10   190000 perm   47 sec   (4064 perm/sec)   p_kst 3.157895e-05   p_cons 5.333579e-01   p_joint 1.789474e-04

Joint ci ratio: 6.443828e-01	ci left: 1.260729e-04	ci right 2.491873e-04	k: 36	n:200000
Cons ci ratio: 8.196797e-03	ci left: 5.312906e-01	ci right 5.356684e-01	k: 106696	n:200000
KS ci ratio: 1.481591e+00	ci left: 1.100955e-05	ci right 6.529622e-05	k: 6	n:200000
IFNA10   200000 perm   50 sec   (4000 perm/sec)   p_kst 3.000000e-05   p_cons 5.334800e-01   p_joint 1.800000e-04

Joint ci ratio: 7.156380e-01	ci left: 9.248644e-05	ci right 1.983218e-04	k: 29	n:210000
Cons ci ratio: 7.998936e-03	ci left: 5.313635e-01	ci right 5.356356e-01	k: 112035	n:210000
KS ci ratio: 1.481593e+00	ci left: 1.048528e-05	ci right 6.218693e-05	k: 6	n:210000
IFNA10   210000 perm   53 sec   (3941 perm/sec)   p_kst 2.857143e-05   p_cons 5.335000e-01   p_joint 1.380952e-04

Joint ci ratio: 7.156404e-01	ci left: 8.828243e-05	ci right 1.893075e-04	k: 29	n:220000
Cons ci ratio: 7.814602e-03	ci left: 5.314399e-01	ci right 5.356137e-01	k: 117376	n:220000
KS ci ratio: 1.481594e+00	ci left: 1.000867e-05	ci right 5.936029e-05	k: 6	n:220000
IFNA10   220000 perm   57 sec   (3884 perm/sec)   p_kst 2.727273e-05   p_cons 5.335273e-01   p_joint 1.318182e-04

Joint ci ratio: 7.040038e-01	ci left: 8.800548e-05	ci right 1.861986e-04	k: 30	n:230000
Cons ci ratio: 7.641183e-03	ci left: 5.315934e-01	ci right 5.356753e-01	k: 122736	n:230000
KS ci ratio: 1.481595e+00	ci left: 9.573512e-06	ci right 5.677945e-05	k: 6	n:230000
IFNA10   230000 perm   60 sec   (3832 perm/sec)   p_kst 2.608696e-05   p_cons 5.336348e-01   p_joint 1.304348e-04

Joint ci ratio: 6.722254e-01	ci left: 9.465050e-05	ci right 1.930958e-04	k: 33	n:240000
Cons ci ratio: 7.484205e-03	ci left: 5.313766e-01	ci right 5.353726e-01	k: 128010	n:240000
KS ci ratio: 1.385903e+00	ci left: 1.172659e-05	ci right 6.009355e-05	k: 7	n:240000
IFNA10   240000 perm   64 sec   (3779 perm/sec)   p_kst 2.916667e-05   p_cons 5.333750e-01   p_joint 1.375000e-04

Joint ci ratio: 6.929189e-01	ci left: 8.425349e-05	ci right 1.760035e-04	k: 31	n:250000
Cons ci ratio: 7.340703e-03	ci left: 5.308939e-01	ci right 5.348093e-01	k: 133213	n:250000
KS ci ratio: 1.385904e+00	ci left: 1.125752e-05	ci right 5.768985e-05	k: 7	n:250000
IFNA10   250000 perm   67 sec   (3730 perm/sec)   p_kst 2.800000e-05   p_cons 5.328520e-01   p_joint 1.240000e-04

Joint ci ratio: 8.357098e-01	ci left: 4.999810e-05	ci right 1.234617e-04	k: 21	n:260000
Cons ci ratio: 7.198793e-03	ci left: 5.308877e-01	ci right 5.347270e-01	k: 138530	n:260000
KS ci ratio: 1.385905e+00	ci left: 1.082454e-05	ci right 5.547104e-05	k: 7	n:260000
IFNA10   260000 perm   71 sec   (3682 perm/sec)   p_kst 2.692308e-05   p_cons 5.328077e-01   p_joint 8.076923e-05

Joint ci ratio: 8.173402e-01	ci left: 5.106469e-05	ci right 1.233614e-04	k: 22	n:270000
Cons ci ratio: 7.065544e-03	ci left: 5.308307e-01	ci right 5.345982e-01	k: 143833	n:270000
KS ci ratio: 1.385906e+00	ci left: 1.042363e-05	ci right 5.341658e-05	k: 7	n:270000
IFNA10   270000 perm   74 sec   (3633 perm/sec)   p_kst 2.592593e-05   p_cons 5.327148e-01   p_joint 8.148148e-05

Joint ci ratio: 8.173415e-01	ci left: 4.924093e-05	ci right 1.189557e-04	k: 22	n:280000
Cons ci ratio: 6.935996e-03	ci left: 5.310249e-01	ci right 5.347244e-01	k: 149205	n:280000
KS ci ratio: 1.385907e+00	ci left: 1.005135e-05	ci right 5.150887e-05	k: 7	n:280000
IFNA10   280000 perm   78 sec   (3586 perm/sec)   p_kst 2.500000e-05   p_cons 5.328750e-01   p_joint 7.857143e-05

Joint ci ratio: 8.173427e-01	ci left: 4.754295e-05	ci right 1.148538e-04	k: 22	n:290000
Cons ci ratio: 6.813556e-03	ci left: 5.311890e-01	ci right 5.348241e-01	k: 154572	n:290000
KS ci ratio: 1.385908e+00	ci left: 9.704753e-06	ci right 4.973273e-05	k: 7	n:290000
IFNA10   290000 perm   82 sec   (3540 perm/sec)   p_kst 2.413793e-05   p_cons 5.330069e-01   p_joint 7.586207e-05

Joint ci ratio: 7.839660e-01	ci left: 5.125816e-05	ci right 1.190313e-04	k: 24	n:300000
Cons ci ratio: 6.699263e-03	ci left: 5.312027e-01	ci right 5.347766e-01	k: 159897	n:300000
KS ci ratio: 1.385909e+00	ci left: 9.381260e-06	ci right 4.807499e-05	k: 7	n:300000
IFNA10   300000 perm   86 sec   (3496 perm/sec)   p_kst 2.333333e-05   p_cons 5.329900e-01   p_joint 8.000000e-05

Joint ci ratio: 7.839671e-01	ci left: 4.960465e-05	ci right 1.151917e-04	k: 24	n:310000
Cons ci ratio: 6.589894e-03	ci left: 5.312644e-01	ci right 5.347801e-01	k: 165237	n:310000
KS ci ratio: 1.385909e+00	ci left: 9.078637e-06	ci right 4.652420e-05	k: 7	n:310000
IFNA10   310000 perm   90 sec   (3454 perm/sec)   p_kst 2.258065e-05   p_cons 5.330226e-01   p_joint 7.741935e-05

Joint ci ratio: 8.765099e-01	ci left: 3.574800e-05	ci right 9.271987e-05	k: 19	n:320000
Cons ci ratio: 6.485265e-03	ci left: 5.313571e-01	ci right 5.348173e-01	k: 170588	n:320000
KS ci ratio: 1.385910e+00	ci left: 8.794928e-06	ci right 4.507034e-05	k: 7	n:320000
IFNA10   320000 perm   94 sec   (3410 perm/sec)   p_kst 2.187500e-05   p_cons 5.330875e-01   p_joint 5.937500e-05

Joint ci ratio: 8.553856e-01	ci left: 3.702014e-05	ci right 9.359960e-05	k: 20	n:330000
Cons ci ratio: 6.386243e-03	ci left: 5.313839e-01	ci right 5.347913e-01	k: 175919	n:330000
KS ci ratio: 1.385910e+00	ci left: 8.528414e-06	ci right 4.370459e-05	k: 7	n:330000
IFNA10   330000 perm   98 sec   (3366 perm/sec)   p_kst 2.121212e-05   p_cons 5.330879e-01   p_joint 6.060606e-05

Joint ci ratio: 8.553865e-01	ci left: 3.593130e-05	ci right 9.084672e-05	k: 20	n:340000
Cons ci ratio: 6.291958e-03	ci left: 5.313830e-01	ci right 5.347399e-01	k: 181241	n:340000
KS ci ratio: 1.385911e+00	ci left: 8.277577e-06	ci right 4.241917e-05	k: 7	n:340000
IFNA10   340000 perm   102 sec   (3323 perm/sec)   p_kst 2.058824e-05   p_cons 5.330618e-01   p_joint 5.882353e-05

Joint ci ratio: 8.553872e-01	ci left: 3.490468e-05	ci right 8.825114e-05	k: 20	n:350000
Cons ci ratio: 6.201373e-03	ci left: 5.314112e-01	ci right 5.347197e-01	k: 186573	n:350000
KS ci ratio: 1.385911e+00	ci left: 8.041074e-06	ci right 4.120721e-05	k: 7	n:350000
IFNA10   350000 perm   107 sec   (3280 perm/sec)   p_kst 2.000000e-05   p_cons 5.330657e-01   p_joint 5.714286e-05

Joint ci ratio: 8.553880e-01	ci left: 3.393510e-05	ci right 8.579975e-05	k: 20	n:360000
Cons ci ratio: 6.114113e-03	ci left: 5.314770e-01	ci right 5.347392e-01	k: 191919	n:360000
KS ci ratio: 1.385912e+00	ci left: 7.817710e-06	ci right 4.006257e-05	k: 7	n:360000
IFNA10   360000 perm   111 sec   (3238 perm/sec)   p_kst 1.944444e-05   p_cons 5.331083e-01   p_joint 5.555556e-05

Joint ci ratio: 8.357208e-01	ci left: 3.513366e-05	ci right 8.675743e-05	k: 21	n:370000
Cons ci ratio: 6.030207e-03	ci left: 5.315584e-01	ci right 5.347762e-01	k: 197272	n:370000
KS ci ratio: 1.306649e+00	ci left: 9.334726e-06	ci right 4.260277e-05	k: 8	n:370000
IFNA10   370000 perm   116 sec   (3196 perm/sec)   p_kst 2.162162e-05   p_cons 5.331676e-01   p_joint 5.675676e-05

Joint ci ratio: 8.357215e-01	ci left: 3.420908e-05	ci right 8.447437e-05	k: 21	n:380000
Cons ci ratio: 5.950355e-03	ci left: 5.315780e-01	ci right 5.347531e-01	k: 202603	n:380000
KS ci ratio: 1.306649e+00	ci left: 9.089074e-06	ci right 4.148165e-05	k: 8	n:380000
IFNA10   380000 perm   120 sec   (3157 perm/sec)   p_kst 2.105263e-05   p_cons 5.331658e-01   p_joint 5.526316e-05

Joint ci ratio: 8.357222e-01	ci left: 3.333192e-05	ci right 8.230839e-05	k: 21	n:390000
Cons ci ratio: 5.872051e-03	ci left: 5.317276e-01	ci right 5.348616e-01	k: 207985	n:390000
KS ci ratio: 1.306650e+00	ci left: 8.856020e-06	ci right 4.041803e-05	k: 8	n:390000
IFNA10   390000 perm   125 sec   (3120 perm/sec)   p_kst 2.051282e-05   p_cons 5.332949e-01   p_joint 5.384615e-05

Joint ci ratio: 8.357228e-01	ci left: 3.249861e-05	ci right 8.025071e-05	k: 21	n:400000
Cons ci ratio: 5.793847e-03	ci left: 5.321200e-01	ci right 5.352145e-01	k: 213467	n:400000
KS ci ratio: 1.306650e+00	ci left: 8.634619e-06	ci right 3.940759e-05	k: 8	n:400000
IFNA10   400000 perm   130 sec   (3080 perm/sec)   p_kst 2.000000e-05   p_cons 5.336675e-01   p_joint 5.250000e-05

Joint ci ratio: 8.357234e-01	ci left: 3.170596e-05	ci right 7.829341e-05	k: 21	n:410000
Cons ci ratio: 5.721989e-03	ci left: 5.322057e-01	ci right 5.352621e-01	k: 218831	n:410000
KS ci ratio: 1.306651e+00	ci left: 8.424017e-06	ci right 3.844644e-05	k: 8	n:410000
IFNA10   410000 perm   136 sec   (3017 perm/sec)   p_kst 1.951220e-05   p_cons 5.337341e-01   p_joint 5.121951e-05

Joint ci ratio: 8.357239e-01	ci left: 3.095105e-05	ci right 7.642930e-05	k: 21	n:420000
Cons ci ratio: 5.653469e-03	ci left: 5.322232e-01	ci right 5.352430e-01	k: 224168	n:420000
KS ci ratio: 1.306651e+00	ci left: 8.223445e-06	ci right 3.753106e-05	k: 8	n:420000
IFNA10   420000 perm   141 sec   (2984 perm/sec)   p_kst 1.904762e-05   p_cons 5.337333e-01   p_joint 5.000000e-05

Joint ci ratio: 8.357245e-01	ci left: 3.023125e-05	ci right 7.465190e-05	k: 21	n:430000
Cons ci ratio: 5.587824e-03	ci left: 5.321983e-01	ci right 5.351827e-01	k: 229487	n:430000
KS ci ratio: 1.306651e+00	ci left: 8.032201e-06	ci right 3.665825e-05	k: 8	n:430000
IFNA10   430000 perm   146 sec   (2953 perm/sec)   p_kst 1.860465e-05   p_cons 5.336907e-01   p_joint 4.883721e-05

Joint ci ratio: 7.543803e-01	ci left: 3.860050e-05	ci right 8.658068e-05	k: 26	n:440000
Cons ci ratio: 5.523555e-03	ci left: 5.322519e-01	ci right 5.352022e-01	k: 234840	n:440000
KS ci ratio: 1.181908e+00	ci left: 1.089866e-05	ci right 4.179587e-05	k: 10	n:440000
IFNA10   440000 perm   151 sec   (2917 perm/sec)   p_kst 2.272727e-05   p_cons 5.337273e-01   p_joint 5.909091e-05

Joint ci ratio: 7.407865e-01	ci left: 3.954074e-05	ci right 8.729566e-05	k: 27	n:450000
Cons ci ratio: 5.460747e-03	ci left: 5.323678e-01	ci right 5.352851e-01	k: 240222	n:450000
KS ci ratio: 1.181909e+00	ci left: 1.065647e-05	ci right 4.086708e-05	k: 10	n:450000
IFNA10   450000 perm   156 sec   (2884 perm/sec)   p_kst 2.222222e-05   p_cons 5.338267e-01   p_joint 6.000000e-05

Joint ci ratio: 7.407870e-01	ci left: 3.868115e-05	ci right 8.539795e-05	k: 27	n:460000
Cons ci ratio: 5.402157e-03	ci left: 5.322832e-01	ci right 5.351686e-01	k: 245514	n:460000
KS ci ratio: 1.181909e+00	ci left: 1.042481e-05	ci right 3.997867e-05	k: 10	n:460000
IFNA10   460000 perm   161 sec   (2853 perm/sec)   p_kst 2.173913e-05   p_cons 5.337261e-01   p_joint 5.869565e-05

Joint ci ratio: 7.407875e-01	ci left: 3.785814e-05	ci right 8.358100e-05	k: 27	n:470000
Cons ci ratio: 5.344019e-03	ci left: 5.323321e-01	ci right 5.351866e-01	k: 250867	n:470000
KS ci ratio: 1.181909e+00	ci left: 1.020300e-05	ci right 3.912807e-05	k: 10	n:470000
IFNA10   470000 perm   167 sec   (2822 perm/sec)   p_kst 2.127660e-05   p_cons 5.337596e-01   p_joint 5.744681e-05

Joint ci ratio: 7.156677e-01	ci left: 4.046235e-05	ci right 8.676727e-05	k: 29	n:480000
Cons ci ratio: 5.290331e-03	ci left: 5.321333e-01	ci right 5.349580e-01	k: 256102	n:480000
KS ci ratio: 1.181910e+00	ci left: 9.990437e-06	ci right 3.831291e-05	k: 10	n:480000
IFNA10   480000 perm   172 sec   (2792 perm/sec)   p_kst 2.083333e-05   p_cons 5.335458e-01   p_joint 6.041667e-05

Joint ci ratio: 6.823607e-01	ci left: 4.466975e-05	ci right 9.219152e-05	k: 32	n:490000
Cons ci ratio: 5.236252e-03	ci left: 5.321305e-01	ci right 5.349262e-01	k: 261429	n:490000
KS ci ratio: 1.131592e+00	ci left: 1.120650e-05	ci right 4.016707e-05	k: 11	n:490000
IFNA10   490000 perm   177 sec   (2763 perm/sec)   p_kst 2.244898e-05   p_cons 5.335286e-01   p_joint 6.530612e-05

Joint ci ratio: 6.823612e-01	ci left: 4.377635e-05	ci right 9.034771e-05	k: 32	n:500000
Cons ci ratio: 5.183943e-03	ci left: 5.321140e-01	ci right 5.348816e-01	k: 266749	n:500000
KS ci ratio: 1.131592e+00	ci left: 1.098237e-05	ci right 3.936374e-05	k: 11	n:500000
IFNA10   500000 perm   183 sec   (2736 perm/sec)   p_kst 2.200000e-05   p_cons 5.334980e-01   p_joint 6.400000e-05

Joint ci ratio: 6.823617e-01	ci left: 4.291798e-05	ci right 8.857621e-05	k: 32	n:510000
Cons ci ratio: 5.132767e-03	ci left: 5.321375e-01	ci right 5.348778e-01	k: 272089	n:510000
KS ci ratio: 1.131592e+00	ci left: 1.076703e-05	ci right 3.859190e-05	k: 11	n:510000
IFNA10   510000 perm   188 sec   (2710 perm/sec)   p_kst 2.156863e-05   p_cons 5.335078e-01   p_joint 6.274510e-05

Joint ci ratio: 6.823621e-01	ci left: 4.209263e-05	ci right 8.687285e-05	k: 32	n:520000
Cons ci ratio: 5.082607e-03	ci left: 5.322064e-01	ci right 5.349202e-01	k: 277453	n:520000
KS ci ratio: 1.131592e+00	ci left: 1.055997e-05	ci right 3.784976e-05	k: 11	n:520000
IFNA10   520000 perm   194 sec   (2685 perm/sec)   p_kst 2.115385e-05   p_cons 5.335635e-01   p_joint 6.153846e-05

Joint ci ratio: 6.823625e-01	ci left: 4.129842e-05	ci right 8.523376e-05	k: 32	n:530000
Cons ci ratio: 5.034308e-03	ci left: 5.322313e-01	ci right 5.349193e-01	k: 282795	n:530000
KS ci ratio: 1.131593e+00	ci left: 1.036072e-05	ci right 3.713562e-05	k: 11	n:530000
IFNA10   530000 perm   199 sec   (2660 perm/sec)   p_kst 2.075472e-05   p_cons 5.335755e-01   p_joint 6.037736e-05

Joint ci ratio: 6.823629e-01	ci left: 4.053363e-05	ci right 8.365537e-05	k: 32	n:540000
Cons ci ratio: 4.986507e-03	ci left: 5.323406e-01	ci right 5.350035e-01	k: 288183	n:540000
KS ci ratio: 1.131593e+00	ci left: 1.016886e-05	ci right 3.644793e-05	k: 11	n:540000
IFNA10   540000 perm   205 sec   (2633 perm/sec)   p_kst 2.037037e-05   p_cons 5.336722e-01   p_joint 5.925926e-05

Joint ci ratio: 6.722531e-01	ci left: 4.130159e-05	ci right 8.426129e-05	k: 33	n:550000
Cons ci ratio: 4.940204e-03	ci left: 5.324296e-01	ci right 5.350682e-01	k: 293562	n:550000
KS ci ratio: 1.087199e+00	ci left: 1.127382e-05	ci right 3.811166e-05	k: 12	n:550000
IFNA10   550000 perm   211 sec   (2609 perm/sec)   p_kst 2.181818e-05   p_cons 5.337491e-01   p_joint 6.000000e-05

Joint ci ratio: 6.625796e-01	ci left: 4.204676e-05	ci right 8.484111e-05	k: 34	n:560000
Cons ci ratio: 4.895414e-03	ci left: 5.324906e-01	ci right 5.351055e-01	k: 298927	n:560000
KS ci ratio: 1.087199e+00	ci left: 1.107250e-05	ci right 3.743110e-05	k: 12	n:560000
IFNA10   560000 perm   217 sec   (2586 perm/sec)   p_kst 2.142857e-05   p_cons 5.337982e-01   p_joint 6.071429e-05

Joint ci ratio: 6.444225e-01	ci left: 4.423539e-05	ci right 8.743609e-05	k: 36	n:570000
Cons ci ratio: 4.852213e-03	ci left: 5.325092e-01	ci right 5.351010e-01	k: 304269	n:570000
KS ci ratio: 1.087199e+00	ci left: 1.087825e-05	ci right 3.677442e-05	k: 12	n:570000
IFNA10   570000 perm   222 sec   (2563 perm/sec)   p_kst 2.105263e-05   p_cons 5.338053e-01   p_joint 6.315789e-05

Joint ci ratio: 6.444229e-01	ci left: 4.347271e-05	ci right 8.592859e-05	k: 36	n:580000
Cons ci ratio: 4.809453e-03	ci left: 5.325979e-01	ci right 5.351673e-01	k: 309652	n:580000
KS ci ratio: 1.087199e+00	ci left: 1.069069e-05	ci right 3.614038e-05	k: 12	n:580000
IFNA10   580000 perm   228 sec   (2540 perm/sec)   p_kst 2.068966e-05   p_cons 5.338828e-01   p_joint 6.206897e-05

Joint ci ratio: 6.444233e-01	ci left: 4.273588e-05	ci right 8.447219e-05	k: 36	n:590000
Cons ci ratio: 4.768275e-03	ci left: 5.326346e-01	ci right 5.351820e-01	k: 315006	n:590000
KS ci ratio: 1.087199e+00	ci left: 1.050949e-05	ci right 3.552784e-05	k: 12	n:590000
IFNA10   590000 perm   234 sec   (2517 perm/sec)   p_kst 2.033898e-05   p_cons 5.339085e-01   p_joint 6.101695e-05

Joint ci ratio: 6.444236e-01	ci left: 4.202361e-05	ci right 8.306433e-05	k: 36	n:600000
Cons ci ratio: 4.728849e-03	ci left: 5.325951e-01	ci right 5.351212e-01	k: 320315	n:600000
KS ci ratio: 1.087200e+00	ci left: 1.033433e-05	ci right 3.493571e-05	k: 12	n:600000
IFNA10   600000 perm   241 sec   (2495 perm/sec)   p_kst 2.000000e-05   p_cons 5.338583e-01   p_joint 6.000000e-05

Joint ci ratio: 6.358876e-01	ci left: 4.270759e-05	ci right 8.360499e-05	k: 37	n:610000
Cons ci ratio: 4.689319e-03	ci left: 5.326701e-01	ci right 5.351755e-01	k: 325693	n:610000
KS ci ratio: 1.087200e+00	ci left: 1.016492e-05	ci right 3.436300e-05	k: 12	n:610000
IFNA10   610000 perm   247 sec   (2473 perm/sec)   p_kst 1.967213e-05   p_cons 5.339230e-01   p_joint 6.065574e-05

Joint ci ratio: 6.197859e-01	ci left: 4.473071e-05	ci right 8.598979e-05	k: 39	n:620000
Cons ci ratio: 4.651578e-03	ci left: 5.326557e-01	ci right 5.351407e-01	k: 331017	n:620000
KS ci ratio: 1.047651e+00	ci left: 1.116449e-05	ci right 3.585521e-05	k: 13	n:620000
IFNA10   620000 perm   253 sec   (2451 perm/sec)   p_kst 2.096774e-05   p_cons 5.338984e-01   p_joint 6.290323e-05

Joint ci ratio: 6.625820e-01	ci left: 3.737487e-05	ci right 7.541442e-05	k: 34	n:630000
Cons ci ratio: 4.614616e-03	ci left: 5.326545e-01	ci right 5.351198e-01	k: 336349	n:630000
KS ci ratio: 1.047652e+00	ci left: 1.098727e-05	ci right 3.528608e-05	k: 13	n:630000
IFNA10   630000 perm   259 sec   (2428 perm/sec)   p_kst 2.063492e-05   p_cons 5.338873e-01   p_joint 5.396825e-05

Joint ci ratio: 6.625823e-01	ci left: 3.679088e-05	ci right 7.423608e-05	k: 34	n:640000
Cons ci ratio: 4.578449e-03	ci left: 5.326613e-01	ci right 5.351072e-01	k: 341686	n:640000
KS ci ratio: 1.047652e+00	ci left: 1.081559e-05	ci right 3.473474e-05	k: 13	n:640000
IFNA10   640000 perm   266 sec   (2405 perm/sec)   p_kst 2.031250e-05   p_cons 5.338844e-01   p_joint 5.312500e-05

Joint ci ratio: 6.625826e-01	ci left: 3.622486e-05	ci right 7.309400e-05	k: 34	n:650000
Cons ci ratio: 4.543583e-03	ci left: 5.326171e-01	ci right 5.350441e-01	k: 346990	n:650000
KS ci ratio: 1.047652e+00	ci left: 1.064920e-05	ci right 3.420037e-05	k: 13	n:650000
IFNA10   650000 perm   273 sec   (2383 perm/sec)   p_kst 2.000000e-05   p_cons 5.338308e-01   p_joint 5.230769e-05

Joint ci ratio: 6.444255e-01	ci left: 3.820325e-05	ci right 7.551311e-05	k: 36	n:660000
Cons ci ratio: 4.509296e-03	ci left: 5.325971e-01	ci right 5.350056e-01	k: 352309	n:660000
KS ci ratio: 1.047652e+00	ci left: 1.048785e-05	ci right 3.368218e-05	k: 13	n:660000
IFNA10   660000 perm   280 sec   (2361 perm/sec)   p_kst 1.969697e-05   p_cons 5.338015e-01   p_joint 5.454545e-05

Joint ci ratio: 6.358895e-01	ci left: 3.888300e-05	ci right 7.611805e-05	k: 37	n:670000
Cons ci ratio: 4.475465e-03	ci left: 5.326121e-01	ci right 5.350026e-01	k: 357651	n:670000
KS ci ratio: 1.047652e+00	ci left: 1.033131e-05	ci right 3.317947e-05	k: 13	n:670000
IFNA10   670000 perm   286 sec   (2340 perm/sec)   p_kst 1.940299e-05   p_cons 5.338075e-01   p_joint 5.522388e-05

Joint ci ratio: 6.358897e-01	ci left: 3.831118e-05	ci right 7.499868e-05	k: 37	n:680000
Cons ci ratio: 4.442935e-03	ci left: 5.325649e-01	ci right 5.349378e-01	k: 362951	n:680000
KS ci ratio: 1.047653e+00	ci left: 1.017938e-05	ci right 3.269154e-05	k: 13	n:680000
IFNA10   680000 perm   293 sec   (2319 perm/sec)   p_kst 1.911765e-05   p_cons 5.337515e-01   p_joint 5.441176e-05

Joint ci ratio: 6.533158e-01	ci left: 3.533182e-05	ci right 7.054499e-05	k: 35	n:690000
Cons ci ratio: 4.409910e-03	ci left: 5.326540e-01	ci right 5.350095e-01	k: 368344	n:690000
KS ci ratio: 1.047653e+00	ci left: 1.003185e-05	ci right 3.221775e-05	k: 13	n:690000
IFNA10   690000 perm   300 sec   (2297 perm/sec)   p_kst 1.884058e-05   p_cons 5.338319e-01   p_joint 5.072464e-05

Joint ci ratio: 6.722576e-01	ci left: 3.245119e-05	ci right 6.620547e-05	k: 33	n:700000
Cons ci ratio: 4.378025e-03	ci left: 5.326934e-01	ci right 5.350320e-01	k: 373704	n:700000
KS ci ratio: 1.047653e+00	ci left: 9.888539e-06	ci right 3.175750e-05	k: 13	n:700000
IFNA10   700000 perm   307 sec   (2277 perm/sec)   p_kst 1.857143e-05   p_cons 5.338629e-01   p_joint 4.714286e-05

Joint ci ratio: 4.587774e-01	ci left: 7.934669e-05	ci right 1.277055e-04	k: 72	n:710000
Cons ci ratio: 4.346994e-03	ci left: 5.327120e-01	ci right 5.350342e-01	k: 379050	n:710000
KS ci ratio: 1.012128e+00	ci left: 1.078022e-05	ci right 3.308375e-05	k: 14	n:710000
IFNA10   710000 perm   315 sec   (2257 perm/sec)   p_kst 1.971831e-05   p_cons 5.338732e-01   p_joint 1.014085e-04

Joint ci ratio: 4.587777e-01	ci left: 7.824464e-05	ci right 1.259318e-04	k: 72	n:720000
Cons ci ratio: 4.315830e-03	ci left: 5.328205e-01	ci right 5.351264e-01	k: 384461	n:720000
KS ci ratio: 1.012128e+00	ci left: 1.063050e-05	ci right 3.262426e-05	k: 14	n:720000
IFNA10   720000 perm   322 sec   (2238 perm/sec)   p_kst 1.944444e-05   p_cons 5.339736e-01   p_joint 1.000000e-04

Joint ci ratio: 4.556673e-01	ci left: 7.838483e-05	ci right 1.257334e-04	k: 73	n:730000
Cons ci ratio: 4.286637e-03	ci left: 5.327740e-01	ci right 5.350641e-01	k: 389761	n:730000
KS ci ratio: 1.012129e+00	ci left: 1.048487e-05	ci right 3.217735e-05	k: 14	n:730000
IFNA10   730000 perm   329 sec   (2220 perm/sec)   p_kst 1.917808e-05   p_cons 5.339192e-01   p_joint 1.000000e-04

Joint ci ratio: 5.977766e-01	ci left: 4.090557e-05	ci right 7.671788e-05	k: 42	n:740000
Cons ci ratio: 4.258213e-03	ci left: 5.327072e-01	ci right 5.349817e-01	k: 395045	n:740000
KS ci ratio: 1.012129e+00	ci left: 1.034319e-05	ci right 3.174253e-05	k: 14	n:740000
IFNA10   740000 perm   336 sec   (2201 perm/sec)   p_kst 1.891892e-05   p_cons 5.338446e-01   p_joint 5.675676e-05

Joint ci ratio: 5.909445e-01	ci left: 4.149272e-05	ci right 7.722686e-05	k: 43	n:750000
Cons ci ratio: 4.229123e-03	ci left: 5.327862e-01	ci right 5.350455e-01	k: 400437	n:750000
KS ci ratio: 1.012129e+00	ci left: 1.020528e-05	ci right 3.131930e-05	k: 14	n:750000
IFNA10   750000 perm   344 sec   (2182 perm/sec)   p_kst 1.866667e-05   p_cons 5.339160e-01   p_joint 5.733333e-05

Joint ci ratio: 5.909447e-01	ci left: 4.094676e-05	ci right 7.621072e-05	k: 43	n:760000
Cons ci ratio: 4.201054e-03	ci left: 5.328119e-01	ci right 5.350563e-01	k: 405790	n:760000
KS ci ratio: 1.012129e+00	ci left: 1.007100e-05	ci right 3.090720e-05	k: 14	n:760000
IFNA10   760000 perm   351 sec   (2164 perm/sec)   p_kst 1.842105e-05   p_cons 5.339342e-01   p_joint 5.657895e-05

Joint ci ratio: 6.048522e-01	ci left: 3.821105e-05	ci right 7.223455e-05	k: 41	n:770000
Cons ci ratio: 4.173384e-03	ci left: 5.328551e-01	ci right 5.350849e-01	k: 411157	n:770000
KS ci ratio: 1.012129e+00	ci left: 9.940204e-06	ci right 3.050581e-05	k: 14	n:770000
IFNA10   770000 perm   359 sec   (2146 perm/sec)   p_kst 1.818182e-05   p_cons 5.339701e-01   p_joint 5.324675e-05

Joint ci ratio: 5.977775e-01	ci left: 3.880784e-05	ci right 7.278367e-05	k: 42	n:780000
Cons ci ratio: 4.146745e-03	ci left: 5.328383e-01	ci right 5.350537e-01	k: 416478	n:780000
KS ci ratio: 1.012129e+00	ci left: 9.812765e-06	ci right 3.011472e-05	k: 14	n:780000
IFNA10   780000 perm   366 sec   (2129 perm/sec)   p_kst 1.794872e-05   p_cons 5.339462e-01   p_joint 5.384615e-05

Joint ci ratio: 6.048527e-01	ci left: 3.724368e-05	ci right 7.040584e-05	k: 41	n:790000
Cons ci ratio: 4.119771e-03	ci left: 5.329233e-01	ci right 5.351246e-01	k: 421879	n:790000
KS ci ratio: 1.012129e+00	ci left: 9.688552e-06	ci right 2.973352e-05	k: 14	n:790000
IFNA10   790000 perm   374 sec   (2112 perm/sec)   p_kst 1.772152e-05   p_cons 5.340241e-01   p_joint 5.189873e-05

Joint ci ratio: 6.048529e-01	ci left: 3.677813e-05	ci right 6.952578e-05	k: 41	n:800000
Cons ci ratio: 4.093235e-03	ci left: 5.330162e-01	ci right 5.352036e-01	k: 427288	n:800000
KS ci ratio: 1.012130e+00	ci left: 9.567445e-06	ci right 2.936185e-05	k: 14	n:800000
IFNA10   800000 perm   382 sec   (2095 perm/sec)   p_kst 1.750000e-05   p_cons 5.341100e-01   p_joint 5.125000e-05

Joint ci ratio: 5.977782e-01	ci left: 3.737050e-05	ci right 7.008800e-05	k: 42	n:810000
Cons ci ratio: 4.068143e-03	ci left: 5.329919e-01	ci right 5.351658e-01	k: 432604	n:810000
KS ci ratio: 1.012130e+00	ci left: 9.449328e-06	ci right 2.899936e-05	k: 14	n:810000
IFNA10   810000 perm   390 sec   (2078 perm/sec)   p_kst 1.728395e-05   p_cons 5.340790e-01   p_joint 5.185185e-05

Joint ci ratio: 5.977784e-01	ci left: 3.691476e-05	ci right 6.923328e-05	k: 42	n:820000
Cons ci ratio: 4.043200e-03	ci left: 5.330062e-01	ci right 5.351668e-01	k: 437951	n:820000
KS ci ratio: 1.012130e+00	ci left: 9.334092e-06	ci right 2.864571e-05	k: 14	n:820000
IFNA10   820000 perm   398 sec   (2062 perm/sec)   p_kst 1.707317e-05   p_cons 5.340866e-01   p_joint 5.121951e-05

Joint ci ratio: 5.977786e-01	ci left: 3.647000e-05	ci right 6.839915e-05	k: 42	n:830000
Cons ci ratio: 4.018690e-03	ci left: 5.330225e-01	ci right 5.351700e-01	k: 443300	n:830000
KS ci ratio: 1.012130e+00	ci left: 9.221632e-06	ci right 2.830059e-05	k: 14	n:830000
IFNA10   830000 perm   406 sec   (2046 perm/sec)   p_kst 1.686747e-05   p_cons 5.340964e-01   p_joint 5.060241e-05

Joint ci ratio: 5.977787e-01	ci left: 3.603583e-05	ci right 6.758488e-05	k: 42	n:840000
Cons ci ratio: 3.994841e-03	ci left: 5.330111e-01	ci right 5.351458e-01	k: 448626	n:840000
KS ci ratio: 1.012130e+00	ci left: 9.111851e-06	ci right 2.796368e-05	k: 14	n:840000
IFNA10   840000 perm   414 sec   (2030 perm/sec)   p_kst 1.666667e-05   p_cons 5.340786e-01   p_joint 5.000000e-05

Joint ci ratio: 5.977789e-01	ci left: 3.561188e-05	ci right 6.678977e-05	k: 42	n:850000
Cons ci ratio: 3.970651e-03	ci left: 5.330953e-01	ci right 5.352174e-01	k: 454033	n:850000
KS ci ratio: 1.012130e+00	ci left: 9.004652e-06	ci right 2.763469e-05	k: 14	n:850000
IFNA10   850000 perm   422 sec   (2014 perm/sec)   p_kst 1.647059e-05   p_cons 5.341565e-01   p_joint 4.941176e-05

Joint ci ratio: 5.977791e-01	ci left: 3.519778e-05	ci right 6.601315e-05	k: 42	n:860000
Cons ci ratio: 3.947669e-03	ci left: 5.330799e-01	ci right 5.351896e-01	k: 459356	n:860000
KS ci ratio: 1.012130e+00	ci left: 8.899947e-06	ci right 2.731336e-05	k: 14	n:860000
IFNA10   860000 perm   430 sec   (1998 perm/sec)   p_kst 1.627907e-05   p_cons 5.341349e-01   p_joint 4.883721e-05

Joint ci ratio: 5.977793e-01	ci left: 3.479321e-05	ci right 6.525439e-05	k: 42	n:870000
Cons ci ratio: 3.924811e-03	ci left: 5.330994e-01	ci right 5.351969e-01	k: 464709	n:870000
KS ci ratio: 1.012130e+00	ci left: 8.797648e-06	ci right 2.699942e-05	k: 14	n:870000
IFNA10   870000 perm   439 sec   (1983 perm/sec)   p_kst 1.609195e-05   p_cons 5.341483e-01   p_joint 4.827586e-05

Joint ci ratio: 5.977795e-01	ci left: 3.439783e-05	ci right 6.451287e-05	k: 42	n:880000
Cons ci ratio: 3.901979e-03	ci left: 5.331651e-01	ci right 5.352506e-01	k: 470103	n:880000
KS ci ratio: 1.012130e+00	ci left: 8.697674e-06	ci right 2.669261e-05	k: 14	n:880000
IFNA10   880000 perm   447 sec   (1969 perm/sec)   p_kst 1.590909e-05   p_cons 5.342080e-01   p_joint 4.772727e-05

Joint ci ratio: 5.977796e-01	ci left: 3.401134e-05	ci right 6.378801e-05	k: 42	n:890000
Cons ci ratio: 3.880531e-03	ci left: 5.331023e-01	ci right 5.351761e-01	k: 475384	n:890000
KS ci ratio: 1.012131e+00	ci left: 8.599947e-06	ci right 2.639269e-05	k: 14	n:890000
IFNA10   890000 perm   455 sec   (1955 perm/sec)   p_kst 1.573034e-05   p_cons 5.341393e-01   p_joint 4.719101e-05

Joint ci ratio: 5.977798e-01	ci left: 3.363343e-05	ci right 6.307926e-05	k: 42	n:900000
Cons ci ratio: 3.858959e-03	ci left: 5.331021e-01	ci right 5.351644e-01	k: 480720	n:900000
KS ci ratio: 1.012131e+00	ci left: 8.504392e-06	ci right 2.609944e-05	k: 14	n:900000
IFNA10   900000 perm   464 sec   (1941 perm/sec)   p_kst 1.555556e-05   p_cons 5.341333e-01   p_joint 4.666667e-05

Joint ci ratio: 5.977799e-01	ci left: 3.326383e-05	ci right 6.238609e-05	k: 42	n:910000
Cons ci ratio: 3.838158e-03	ci left: 5.330481e-01	ci right 5.350990e-01	k: 486007	n:910000
KS ci ratio: 1.012131e+00	ci left: 8.410937e-06	ci right 2.581264e-05	k: 14	n:910000
IFNA10   910000 perm   472 sec   (1928 perm/sec)   p_kst 1.538462e-05   p_cons 5.340736e-01   p_joint 4.615385e-05

Joint ci ratio: 5.977801e-01	ci left: 3.290226e-05	ci right 6.170798e-05	k: 42	n:920000
Cons ci ratio: 3.816672e-03	ci left: 5.331279e-01	ci right 5.351676e-01	k: 491416	n:920000
KS ci ratio: 1.012131e+00	ci left: 8.319514e-06	ci right 2.553207e-05	k: 14	n:920000
IFNA10   920000 perm   480 sec   (1915 perm/sec)   p_kst 1.521739e-05   p_cons 5.341478e-01   p_joint 4.565217e-05

Joint ci ratio: 5.909479e-01	ci left: 3.346182e-05	ci right 6.227984e-05	k: 43	n:930000
Cons ci ratio: 3.796199e-03	ci left: 5.331199e-01	ci right 5.351487e-01	k: 496745	n:930000
KS ci ratio: 9.799910e-01	ci left: 9.027324e-06	ci right 2.660225e-05	k: 15	n:930000
IFNA10   930000 perm   489 sec   (1902 perm/sec)   p_kst 1.612903e-05   p_cons 5.341344e-01   p_joint 4.623656e-05

Joint ci ratio: 5.843448e-01	ci left: 3.401134e-05	ci right 6.283774e-05	k: 44	n:940000
Cons ci ratio: 3.775439e-03	ci left: 5.331931e-01	ci right 5.352110e-01	k: 502150	n:940000
KS ci ratio: 9.799911e-01	ci left: 8.931288e-06	ci right 2.631925e-05	k: 15	n:940000
IFNA10   940000 perm   498 sec   (1889 perm/sec)   p_kst 1.595745e-05   p_cons 5.342021e-01   p_joint 4.680851e-05

Joint ci ratio: 5.717763e-01	ci left: 3.545051e-05	ci right 6.458638e-05	k: 46	n:950000
Cons ci ratio: 3.755119e-03	ci left: 5.332510e-01	ci right 5.352582e-01	k: 507542	n:950000
KS ci ratio: 9.799912e-01	ci left: 8.837275e-06	ci right 2.604220e-05	k: 15	n:950000
IFNA10   950000 perm   507 sec   (1875 perm/sec)   p_kst 1.578947e-05   p_cons 5.342547e-01   p_joint 4.842105e-05

Joint ci ratio: 5.717765e-01	ci left: 3.508123e-05	ci right 6.391361e-05	k: 46	n:960000
Cons ci ratio: 3.735201e-03	ci left: 5.332974e-01	ci right 5.352941e-01	k: 512924	n:960000
KS ci ratio: 9.799913e-01	ci left: 8.745219e-06	ci right 2.577093e-05	k: 15	n:960000
IFNA10   960000 perm   516 sec   (1862 perm/sec)   p_kst 1.562500e-05   p_cons 5.342958e-01   p_joint 4.791667e-05

Joint ci ratio: 5.657890e-01	ci left: 3.560210e-05	ci right 6.443251e-05	k: 47	n:970000
Cons ci ratio: 3.715667e-03	ci left: 5.333335e-01	ci right 5.353199e-01	k: 518297	n:970000
KS ci ratio: 9.799914e-01	ci left: 8.655062e-06	ci right 2.550525e-05	k: 15	n:970000
IFNA10   970000 perm   525 sec   (1849 perm/sec)   p_kst 1.546392e-05   p_cons 5.343268e-01   p_joint 4.845361e-05

Joint ci ratio: 5.599857e-01	ci left: 3.611390e-05	ci right 6.493931e-05	k: 48	n:980000
Cons ci ratio: 3.696685e-03	ci left: 5.333353e-01	ci right 5.353115e-01	k: 523637	n:980000
KS ci ratio: 9.799915e-01	ci left: 8.566745e-06	ci right 2.524500e-05	k: 15	n:980000
IFNA10   980000 perm   534 sec   (1836 perm/sec)   p_kst 1.530612e-05   p_cons 5.343235e-01   p_joint 4.897959e-05

Joint ci ratio: 5.488954e-01	ci left: 3.748605e-05	ci right 6.658408e-05	k: 50	n:990000
Cons ci ratio: 3.678104e-03	ci left: 5.333218e-01	ci right 5.352881e-01	k: 528962	n:990000
KS ci ratio: 9.799916e-01	ci left: 8.480212e-06	ci right 2.499000e-05	k: 15	n:990000
IFNA10   990000 perm   543 sec   (1823 perm/sec)   p_kst 1.515152e-05   p_cons 5.343051e-01   p_joint 5.050505e-05

Joint ci ratio: 5.435918e-01	ci left: 3.797308e-05	ci right 6.705504e-05	k: 51	n:1000000
Cons ci ratio: 3.659999e-03	ci left: 5.332817e-01	ci right 5.352381e-01	k: 534260	n:1000000
KS ci ratio: 9.507311e-01	ci left: 9.145409e-06	ci right 2.598287e-05	k: 16	n:1000000
IFNA10   1000000 perm   552 sec   (1811 perm/sec)   p_kst 1.600000e-05   p_cons 5.342600e-01   p_joint 5.100000e-05

Joint ci ratio: 5.435919e-01	ci left: 3.759710e-05	ci right 6.639114e-05	k: 51	n:1010000
Cons ci ratio: 3.641788e-03	ci left: 5.332929e-01	ci right 5.352396e-01	k: 539609	n:1010000
KS ci ratio: 9.507312e-01	ci left: 9.054860e-06	ci right 2.572561e-05	k: 16	n:1010000
IFNA10   1010000 perm   562 sec   (1798 perm/sec)   p_kst 1.584158e-05   p_cons 5.342663e-01   p_joint 5.049505e-05

Joint ci ratio: 5.435921e-01	ci left: 3.722850e-05	ci right 6.574025e-05	k: 51	n:1020000
Cons ci ratio: 3.623869e-03	ci left: 5.333010e-01	ci right 5.352380e-01	k: 544955	n:1020000
KS ci ratio: 9.507313e-01	ci left: 8.966087e-06	ci right 2.547340e-05	k: 16	n:1020000
IFNA10   1020000 perm   571 sec   (1787 perm/sec)   p_kst 1.568627e-05   p_cons 5.342696e-01   p_joint 5.000000e-05

Joint ci ratio: 5.435922e-01	ci left: 3.686706e-05	ci right 6.510200e-05	k: 51	n:1030000
Cons ci ratio: 3.606788e-03	ci left: 5.332293e-01	ci right 5.351569e-01	k: 550219	n:1030000
KS ci ratio: 9.507313e-01	ci left: 8.879037e-06	ci right 2.522609e-05	k: 16	n:1030000
IFNA10   1030000 perm   580 sec   (1776 perm/sec)   p_kst 1.553398e-05   p_cons 5.341932e-01   p_joint 4.951456e-05

Joint ci ratio: 5.435923e-01	ci left: 3.651257e-05	ci right 6.447602e-05	k: 51	n:1040000
Cons ci ratio: 3.589801e-03	ci left: 5.331792e-01	ci right 5.350976e-01	k: 555504	n:1040000
KS ci ratio: 9.507314e-01	ci left: 8.793662e-06	ci right 2.498353e-05	k: 16	n:1040000
IFNA10   1040000 perm   589 sec   (1765 perm/sec)   p_kst 1.538462e-05   p_cons 5.341385e-01   p_joint 4.903846e-05

Joint ci ratio: 5.435925e-01	ci left: 3.616483e-05	ci right 6.386197e-05	k: 51	n:1050000
Cons ci ratio: 3.572504e-03	ci left: 5.332063e-01	ci right 5.351155e-01	k: 560869	n:1050000
KS ci ratio: 9.507315e-01	ci left: 8.709912e-06	ci right 2.474559e-05	k: 16	n:1050000
IFNA10   1050000 perm   599 sec   (1753 perm/sec)   p_kst 1.523810e-05   p_cons 5.341610e-01   p_joint 4.857143e-05

Joint ci ratio: 5.435926e-01	ci left: 3.582365e-05	ci right 6.325950e-05	k: 51	n:1060000
Cons ci ratio: 3.555657e-03	ci left: 5.332045e-01	ci right 5.351047e-01	k: 566204	n:1060000
KS ci ratio: 9.507316e-01	ci left: 8.627743e-06	ci right 2.451215e-05	k: 16	n:1060000
IFNA10   1060000 perm   609 sec   (1741 perm/sec)   p_kst 1.509434e-05   p_cons 5.341547e-01   p_joint 4.811321e-05

Joint ci ratio: 5.435927e-01	ci left: 3.548884e-05	ci right 6.266830e-05	k: 51	n:1070000
Cons ci ratio: 3.538355e-03	ci left: 5.333001e-01	ci right 5.351913e-01	k: 571643	n:1070000
KS ci ratio: 9.507317e-01	ci left: 8.547110e-06	ci right 2.428306e-05	k: 16	n:1070000
IFNA10   1070000 perm   619 sec   (1729 perm/sec)   p_kst 1.495327e-05   p_cons 5.342458e-01   p_joint 4.766355e-05

Joint ci ratio: 6.444327e-01	ci left: 2.334636e-05	ci right 4.614709e-05	k: 36	n:1080000
Cons ci ratio: 3.521782e-03	ci left: 5.333263e-01	ci right 5.352087e-01	k: 577009	n:1080000
KS ci ratio: 9.507317e-01	ci left: 8.467970e-06	ci right 2.405822e-05	k: 16	n:1080000
IFNA10   1080000 perm   629 sec   (1718 perm/sec)   p_kst 1.481481e-05   p_cons 5.342676e-01   p_joint 3.333333e-05

Joint ci ratio: 6.358966e-01	ci left: 2.390049e-05	ci right 4.678835e-05	k: 37	n:1090000
Cons ci ratio: 3.505678e-03	ci left: 5.333181e-01	ci right 5.351919e-01	k: 582338	n:1090000
KS ci ratio: 9.507318e-01	ci left: 8.390282e-06	ci right 2.383750e-05	k: 16	n:1090000
IFNA10   1090000 perm   639 sec   (1706 perm/sec)   p_kst 1.467890e-05   p_cons 5.342550e-01   p_joint 3.394495e-05

Joint ci ratio: 6.197949e-01	ci left: 2.521177e-05	ci right 4.846722e-05	k: 39	n:1100000
Cons ci ratio: 3.489755e-03	ci left: 5.333155e-01	ci right 5.351807e-01	k: 587673	n:1100000
KS ci ratio: 9.239449e-01	ci left: 9.002867e-06	ci right 2.474411e-05	k: 17	n:1100000
IFNA10   1100000 perm   649 sec   (1694 perm/sec)   p_kst 1.545455e-05   p_cons 5.342482e-01   p_joint 3.545455e-05

Joint ci ratio: 6.197950e-01	ci left: 2.498463e-05	ci right 4.803058e-05	k: 39	n:1110000
Cons ci ratio: 3.474053e-03	ci left: 5.333120e-01	ci right 5.351689e-01	k: 593007	n:1110000
KS ci ratio: 9.239450e-01	ci left: 8.921760e-06	ci right 2.452119e-05	k: 17	n:1110000
IFNA10   1110000 perm   660 sec   (1683 perm/sec)   p_kst 1.531532e-05   p_cons 5.342405e-01   p_joint 3.513514e-05

Joint ci ratio: 6.197951e-01	ci left: 2.476155e-05	ci right 4.760173e-05	k: 39	n:1120000
Cons ci ratio: 3.459039e-03	ci left: 5.332399e-01	ci right 5.350885e-01	k: 598264	n:1120000
KS ci ratio: 9.239450e-01	ci left: 8.842101e-06	ci right 2.430225e-05	k: 17	n:1120000
IFNA10   1120000 perm   670 sec   (1672 perm/sec)   p_kst 1.517857e-05   p_cons 5.341643e-01   p_joint 3.482143e-05

Joint ci ratio: 6.121898e-01	ci left: 2.528913e-05	ci right 4.820203e-05	k: 40	n:1130000
Cons ci ratio: 3.443496e-03	ci left: 5.332735e-01	ci right 5.351139e-01	k: 603639	n:1130000
KS ci ratio: 9.239451e-01	ci left: 8.763852e-06	ci right 2.408719e-05	k: 17	n:1130000
IFNA10   1130000 perm   680 sec   (1661 perm/sec)   p_kst 1.504425e-05   p_cons 5.341938e-01   p_joint 3.539823e-05

Joint ci ratio: 6.121899e-01	ci left: 2.506730e-05	ci right 4.777921e-05	k: 40	n:1140000
Cons ci ratio: 3.428238e-03	ci left: 5.332952e-01	ci right 5.351274e-01	k: 609001	n:1140000
KS ci ratio: 9.239452e-01	ci left: 8.686976e-06	ci right 2.387590e-05	k: 17	n:1140000
IFNA10   1140000 perm   690 sec   (1652 perm/sec)   p_kst 1.491228e-05   p_cons 5.342114e-01   p_joint 3.508772e-05

Joint ci ratio: 6.121900e-01	ci left: 2.484932e-05	ci right 4.736374e-05	k: 40	n:1150000
Cons ci ratio: 3.412287e-03	ci left: 5.334469e-01	ci right 5.352712e-01	k: 614513	n:1150000
KS ci ratio: 9.239452e-01	ci left: 8.611437e-06	ci right 2.366828e-05	k: 17	n:1150000
IFNA10   1150000 perm   701 sec   (1642 perm/sec)   p_kst 1.478261e-05   p_cons 5.343591e-01   p_joint 3.478261e-05

Joint ci ratio: 6.121901e-01	ci left: 2.463510e-05	ci right 4.695544e-05	k: 40	n:1160000
Cons ci ratio: 3.397586e-03	ci left: 5.334452e-01	ci right 5.352615e-01	k: 619850	n:1160000
KS ci ratio: 9.239453e-01	ci left: 8.537200e-06	ci right 2.346425e-05	k: 17	n:1160000
IFNA10   1160000 perm   711 sec   (1631 perm/sec)   p_kst 1.465517e-05   p_cons 5.343534e-01   p_joint 3.448276e-05

Joint ci ratio: 6.121902e-01	ci left: 2.442454e-05	ci right 4.655411e-05	k: 40	n:1170000
Cons ci ratio: 3.383091e-03	ci left: 5.334409e-01	ci right 5.352495e-01	k: 625184	n:1170000
KS ci ratio: 9.239454e-01	ci left: 8.464233e-06	ci right 2.326370e-05	k: 17	n:1170000
IFNA10   1170000 perm   722 sec   (1621 perm/sec)   p_kst 1.452991e-05   p_cons 5.343453e-01   p_joint 3.418803e-05

Joint ci ratio: 6.121903e-01	ci left: 2.421755e-05	ci right 4.615959e-05	k: 40	n:1180000
Cons ci ratio: 3.369250e-03	ci left: 5.333673e-01	ci right 5.351682e-01	k: 630436	n:1180000
KS ci ratio: 9.239454e-01	ci left: 8.392502e-06	ci right 2.306655e-05	k: 17	n:1180000
IFNA10   1180000 perm   732 sec   (1611 perm/sec)   p_kst 1.440678e-05   p_cons 5.342678e-01   p_joint 3.389831e-05

Joint ci ratio: 6.121903e-01	ci left: 2.401404e-05	ci right 4.577169e-05	k: 40	n:1190000
Cons ci ratio: 3.354960e-03	ci left: 5.333865e-01	ci right 5.351798e-01	k: 635797	n:1190000
KS ci ratio: 9.239455e-01	ci left: 8.321976e-06	ci right 2.287271e-05	k: 17	n:1190000
IFNA10   1190000 perm   743 sec   (1602 perm/sec)   p_kst 1.428571e-05   p_cons 5.342832e-01   p_joint 3.361345e-05

Joint ci ratio: 6.121904e-01	ci left: 2.381393e-05	ci right 4.539027e-05	k: 40	n:1200000
Cons ci ratio: 3.341051e-03	ci left: 5.333753e-01	ci right 5.351612e-01	k: 641122	n:1200000
KS ci ratio: 9.239455e-01	ci left: 8.252626e-06	ci right 2.268211e-05	k: 17	n:1200000
IFNA10   1200000 perm   754 sec   (1592 perm/sec)   p_kst 1.416667e-05   p_cons 5.342683e-01   p_joint 3.333333e-05

Joint ci ratio: 6.048584e-01	ci left: 2.431606e-05	ci right 4.596760e-05	k: 41	n:1210000
Cons ci ratio: 3.327060e-03	ci left: 5.334024e-01	ci right 5.351809e-01	k: 646493	n:1210000
KS ci ratio: 9.239456e-01	ci left: 8.184423e-06	ci right 2.249465e-05	k: 17	n:1210000
IFNA10   1210000 perm   764 sec   (1583 perm/sec)   p_kst 1.404959e-05   p_cons 5.342917e-01   p_joint 3.388430e-05

Joint ci ratio: 5.977836e-01	ci left: 2.481151e-05	ci right 4.653398e-05	k: 42	n:1220000
Cons ci ratio: 3.313500e-03	ci left: 5.333906e-01	ci right 5.351617e-01	k: 651817	n:1220000
KS ci ratio: 9.239457e-01	ci left: 8.117337e-06	ci right 2.231027e-05	k: 17	n:1220000
IFNA10   1220000 perm   775 sec   (1574 perm/sec)   p_kst 1.393443e-05   p_cons 5.342762e-01   p_joint 3.442623e-05

Joint ci ratio: 5.977837e-01	ci left: 2.460979e-05	ci right 4.615566e-05	k: 42	n:1230000
Cons ci ratio: 3.300045e-03	ci left: 5.333879e-01	ci right 5.351518e-01	k: 657152	n:1230000
KS ci ratio: 9.239457e-01	ci left: 8.051342e-06	ci right 2.212889e-05	k: 17	n:1230000
IFNA10   1230000 perm   786 sec   (1566 perm/sec)   p_kst 1.382114e-05   p_cons 5.342699e-01   p_joint 3.414634e-05

Joint ci ratio: 5.977838e-01	ci left: 2.441132e-05	ci right 4.578344e-05	k: 42	n:1240000
Cons ci ratio: 3.287194e-03	ci left: 5.333183e-01	ci right 5.350751e-01	k: 662404	n:1240000
KS ci ratio: 9.239458e-01	ci left: 7.986412e-06	ci right 2.195043e-05	k: 17	n:1240000
IFNA10   1240000 perm   797 sec   (1557 perm/sec)   p_kst 1.370968e-05   p_cons 5.341968e-01   p_joint 3.387097e-05

Joint ci ratio: 5.909516e-01	ci left: 2.489556e-05	ci right 4.633630e-05	k: 43	n:1250000
Cons ci ratio: 3.273950e-03	ci left: 5.333323e-01	ci right 5.350820e-01	k: 667759	n:1250000
KS ci ratio: 9.239458e-01	ci left: 7.922520e-06	ci right 2.177483e-05	k: 17	n:1250000
IFNA10   1250000 perm   808 sec   (1547 perm/sec)   p_kst 1.360000e-05   p_cons 5.342072e-01   p_joint 3.440000e-05

Joint ci ratio: 5.909517e-01	ci left: 2.469797e-05	ci right 4.596855e-05	k: 43	n:1260000
Cons ci ratio: 3.261209e-03	ci left: 5.332936e-01	ci right 5.350364e-01	k: 673048	n:1260000
KS ci ratio: 9.239459e-01	ci left: 7.859643e-06	ci right 2.160201e-05	k: 17	n:1260000
IFNA10   1260000 perm   819 sec   (1539 perm/sec)   p_kst 1.349206e-05   p_cons 5.341651e-01   p_joint 3.412698e-05

Joint ci ratio: 5.909518e-01	ci left: 2.450350e-05	ci right 4.560660e-05	k: 43	n:1270000
Cons ci ratio: 3.248625e-03	ci left: 5.332540e-01	ci right 5.349899e-01	k: 678335	n:1270000
KS ci ratio: 9.239459e-01	ci left: 7.797756e-06	ci right 2.143192e-05	k: 17	n:1270000
IFNA10   1270000 perm   830 sec   (1530 perm/sec)   p_kst 1.338583e-05   p_cons 5.341220e-01   p_joint 3.385827e-05

Joint ci ratio: 5.909518e-01	ci left: 2.431207e-05	ci right 4.525030e-05	k: 43	n:1280000
Cons ci ratio: 3.235947e-03	ci left: 5.332518e-01	ci right 5.349809e-01	k: 683669	n:1280000
KS ci ratio: 9.239460e-01	ci left: 7.736836e-06	ci right 2.126448e-05	k: 17	n:1280000
IFNA10   1280000 perm   841 sec   (1522 perm/sec)   p_kst 1.328125e-05   p_cons 5.341164e-01   p_joint 3.359375e-05

Joint ci ratio: 5.909519e-01	ci left: 2.412360e-05	ci right 4.489952e-05	k: 43	n:1290000
Cons ci ratio: 3.223034e-03	ci left: 5.333085e-01	ci right 5.350309e-01	k: 689079	n:1290000
KS ci ratio: 9.239461e-01	ci left: 7.676860e-06	ci right 2.109964e-05	k: 17	n:1290000
IFNA10   1290000 perm   852 sec   (1514 perm/sec)   p_kst 1.317829e-05   p_cons 5.341698e-01   p_joint 3.333333e-05

Joint ci ratio: 5.909520e-01	ci left: 2.393803e-05	ci right 4.455414e-05	k: 43	n:1300000
Cons ci ratio: 3.210687e-03	ci left: 5.333005e-01	ci right 5.350163e-01	k: 694406	n:1300000
KS ci ratio: 9.239461e-01	ci left: 7.617807e-06	ci right 2.093734e-05	k: 17	n:1300000
IFNA10   1300000 perm   863 sec   (1506 perm/sec)   p_kst 1.307692e-05   p_cons 5.341585e-01   p_joint 3.307692e-05

Joint ci ratio: 5.909521e-01	ci left: 2.375530e-05	ci right 4.421404e-05	k: 43	n:1310000
Cons ci ratio: 3.198245e-03	ci left: 5.333293e-01	ci right 5.350385e-01	k: 699781	n:1310000
KS ci ratio: 9.239462e-01	ci left: 7.559656e-06	ci right 2.077751e-05	k: 17	n:1310000
IFNA10   1310000 perm   875 sec   (1498 perm/sec)   p_kst 1.297710e-05   p_cons 5.341840e-01   p_joint 3.282443e-05

Joint ci ratio: 5.909522e-01	ci left: 2.357533e-05	ci right 4.387908e-05	k: 43	n:1320000
Cons ci ratio: 3.186529e-03	ci left: 5.332668e-01	ci right 5.349695e-01	k: 705036	n:1320000
KS ci ratio: 9.239462e-01	ci left: 7.502386e-06	ci right 2.062011e-05	k: 17	n:1320000
IFNA10   1320000 perm   886 sec   (1490 perm/sec)   p_kst 1.287879e-05   p_cons 5.341182e-01   p_joint 3.257576e-05

Joint ci ratio: 5.909522e-01	ci left: 2.339808e-05	ci right 4.354917e-05	k: 43	n:1330000
Cons ci ratio: 3.174441e-03	ci left: 5.332834e-01	ci right 5.349796e-01	k: 710395	n:1330000
KS ci ratio: 9.239463e-01	ci left: 7.445977e-06	ci right 2.046507e-05	k: 17	n:1330000
IFNA10   1330000 perm   897 sec   (1482 perm/sec)   p_kst 1.278195e-05   p_cons 5.341316e-01   p_joint 3.233083e-05

Joint ci ratio: 5.909523e-01	ci left: 2.322346e-05	ci right 4.322418e-05	k: 43	n:1340000
Cons ci ratio: 3.162841e-03	ci left: 5.332445e-01	ci right 5.349345e-01	k: 715680	n:1340000
KS ci ratio: 9.239463e-01	ci left: 7.390410e-06	ci right 2.031235e-05	k: 17	n:1340000
IFNA10   1340000 perm   909 sec   (1474 perm/sec)   p_kst 1.268657e-05   p_cons 5.340896e-01   p_joint 3.208955e-05

Joint ci ratio: 5.909524e-01	ci left: 2.305144e-05	ci right 4.290400e-05	k: 43	n:1350000
Cons ci ratio: 3.151100e-03	ci left: 5.332485e-01	ci right 5.349321e-01	k: 721022	n:1350000
KS ci ratio: 9.239464e-01	ci left: 7.335666e-06	ci right 2.016188e-05	k: 17	n:1350000
IFNA10   1350000 perm   921 sec   (1466 perm/sec)   p_kst 1.259259e-05   p_cons 5.340904e-01   p_joint 3.185185e-05

Joint ci ratio: 5.909525e-01	ci left: 2.288194e-05	ci right 4.258853e-05	k: 43	n:1360000
Cons ci ratio: 3.139577e-03	ci left: 5.332384e-01	ci right 5.349159e-01	k: 726345	n:1360000
KS ci ratio: 9.239464e-01	ci left: 7.281727e-06	ci right 2.001364e-05	k: 17	n:1360000
IFNA10   1360000 perm   933 sec   (1457 perm/sec)   p_kst 1.250000e-05   p_cons 5.340772e-01   p_joint 3.161765e-05

Joint ci ratio: 5.909525e-01	ci left: 2.271492e-05	ci right 4.227767e-05	k: 43	n:1370000
Cons ci ratio: 3.128464e-03	ci left: 5.331832e-01	ci right 5.348546e-01	k: 731606	n:1370000
KS ci ratio: 9.239465e-01	ci left: 7.228576e-06	ci right 1.986755e-05	k: 17	n:1370000
IFNA10   1370000 perm   945 sec   (1449 perm/sec)   p_kst 1.240876e-05   p_cons 5.340190e-01   p_joint 3.138686e-05

Joint ci ratio: 6.121918e-01	ci left: 2.070775e-05	ci right 3.946983e-05	k: 40	n:1380000
Cons ci ratio: 3.117232e-03	ci left: 5.331666e-01	ci right 5.348319e-01	k: 736919	n:1380000
KS ci ratio: 9.239465e-01	ci left: 7.176194e-06	ci right 1.972358e-05	k: 17	n:1380000
IFNA10   1380000 perm   958 sec   (1441 perm/sec)   p_kst 1.231884e-05   p_cons 5.339993e-01   p_joint 2.898551e-05

Joint ci ratio: 6.121919e-01	ci left: 2.055877e-05	ci right 3.918587e-05	k: 40	n:1390000
Cons ci ratio: 3.105917e-03	ci left: 5.331825e-01	ci right 5.348418e-01	k: 742277	n:1390000
KS ci ratio: 9.239465e-01	ci left: 7.124567e-06	ci right 1.958169e-05	k: 17	n:1390000
IFNA10   1390000 perm   970 sec   (1433 perm/sec)   p_kst 1.223022e-05   p_cons 5.340122e-01   p_joint 2.877698e-05

Joint ci ratio: 6.048598e-01	ci left: 2.101601e-05	ci right 3.972917e-05	k: 41	n:1400000
Cons ci ratio: 3.094943e-03	ci left: 5.331633e-01	ci right 5.348166e-01	k: 747586	n:1400000
KS ci ratio: 9.239466e-01	ci left: 7.073677e-06	ci right 1.944182e-05	k: 17	n:1400000
IFNA10   1400000 perm   982 sec   (1425 perm/sec)   p_kst 1.214286e-05   p_cons 5.339900e-01   p_joint 2.928571e-05

Joint ci ratio: 6.048599e-01	ci left: 2.086696e-05	ci right 3.944741e-05	k: 41	n:1410000
Cons ci ratio: 3.084027e-03	ci left: 5.331535e-01	ci right 5.348010e-01	k: 752908	n:1410000
KS ci ratio: 9.239466e-01	ci left: 7.023509e-06	ci right 1.930393e-05	k: 17	n:1410000
IFNA10   1410000 perm   995 sec   (1417 perm/sec)   p_kst 1.205674e-05   p_cons 5.339773e-01   p_joint 2.907801e-05

Joint ci ratio: 6.048600e-01	ci left: 2.072001e-05	ci right 3.916961e-05	k: 41	n:1420000
Cons ci ratio: 3.072718e-03	ci left: 5.332263e-01	ci right 5.348679e-01	k: 758347	n:1420000
KS ci ratio: 9.239467e-01	ci left: 6.974048e-06	ci right 1.916799e-05	k: 17	n:1420000
IFNA10   1420000 perm   1007 sec   (1410 perm/sec)   p_kst 1.197183e-05   p_cons 5.340472e-01   p_joint 2.887324e-05

Joint ci ratio: 6.276936e-01	ci left: 1.880500e-05	ci right 3.647392e-05	k: 38	n:1430000
Cons ci ratio: 3.062215e-03	ci left: 5.331869e-01	ci right 5.348228e-01	k: 763627	n:1430000
KS ci ratio: 9.239467e-01	ci left: 6.925278e-06	ci right 1.903395e-05	k: 17	n:1430000
IFNA10   1430000 perm   1020 sec   (1402 perm/sec)   p_kst 1.188811e-05   p_cons 5.340049e-01   p_joint 2.657343e-05

Joint ci ratio: 6.197976e-01	ci left: 1.925897e-05	ci right 3.702362e-05	k: 39	n:1440000
Cons ci ratio: 3.051526e-03	ci left: 5.331959e-01	ci right 5.348261e-01	k: 768976	n:1440000
KS ci ratio: 8.993034e-01	ci left: 7.408308e-06	ci right 1.975532e-05	k: 18	n:1440000
IFNA10   1440000 perm   1033 sec   (1394 perm/sec)   p_kst 1.250000e-05   p_cons 5.340111e-01   p_joint 2.708333e-05

Joint ci ratio: 6.197977e-01	ci left: 1.912615e-05	ci right 3.676829e-05	k: 39	n:1450000
Cons ci ratio: 3.041158e-03	ci left: 5.331704e-01	ci right 5.347950e-01	k: 774275	n:1450000
KS ci ratio: 8.993035e-01	ci left: 7.357217e-06	ci right 1.961907e-05	k: 18	n:1450000
IFNA10   1450000 perm   1046 sec   (1387 perm/sec)   p_kst 1.241379e-05   p_cons 5.339828e-01   p_joint 2.689655e-05

Joint ci ratio: 6.197977e-01	ci left: 1.899514e-05	ci right 3.651645e-05	k: 39	n:1460000
Cons ci ratio: 3.030904e-03	ci left: 5.331438e-01	ci right 5.347629e-01	k: 779572	n:1460000
KS ci ratio: 8.993035e-01	ci left: 7.306825e-06	ci right 1.948470e-05	k: 18	n:1460000
IFNA10   1460000 perm   1059 sec   (1379 perm/sec)   p_kst 1.232877e-05   p_cons 5.339534e-01   p_joint 2.671233e-05

Joint ci ratio: 6.197978e-01	ci left: 1.886592e-05	ci right 3.626804e-05	k: 39	n:1470000
Cons ci ratio: 3.020633e-03	ci left: 5.331374e-01	ci right 5.347509e-01	k: 784898	n:1470000
KS ci ratio: 8.993036e-01	ci left: 7.257118e-06	ci right 1.935215e-05	k: 18	n:1470000
IFNA10   1470000 perm   1071 sec   (1372 perm/sec)   p_kst 1.224490e-05   p_cons 5.339442e-01   p_joint 2.653061e-05

Joint ci ratio: 6.197978e-01	ci left: 1.873845e-05	ci right 3.602299e-05	k: 39	n:1480000
Cons ci ratio: 3.010597e-03	ci left: 5.331094e-01	ci right 5.347175e-01	k: 790192	n:1480000
KS ci ratio: 8.993036e-01	ci left: 7.208084e-06	ci right 1.922139e-05	k: 18	n:1480000
IFNA10   1480000 perm   1084 sec   (1365 perm/sec)   p_kst 1.216216e-05   p_cons 5.339135e-01   p_joint 2.635135e-05

Joint ci ratio: 6.197979e-01	ci left: 1.861269e-05	ci right 3.578123e-05	k: 39	n:1490000
Cons ci ratio: 3.000223e-03	ci left: 5.331543e-01	ci right 5.347570e-01	k: 795594	n:1490000
KS ci ratio: 8.993036e-01	ci left: 7.159707e-06	ci right 1.909239e-05	k: 18	n:1490000
IFNA10   1490000 perm   1097 sec   (1358 perm/sec)   p_kst 1.208054e-05   p_cons 5.339557e-01   p_joint 2.617450e-05

Joint ci ratio: 6.197980e-01	ci left: 1.848860e-05	ci right 3.554269e-05	k: 39	n:1500000
Cons ci ratio: 2.990288e-03	ci left: 5.331433e-01	ci right 5.347406e-01	k: 800913	n:1500000
KS ci ratio: 8.993037e-01	ci left: 7.111976e-06	ci right 1.896511e-05	k: 18	n:1500000
IFNA10   1500000 perm   1110 sec   (1351 perm/sec)   p_kst 1.200000e-05   p_cons 5.339420e-01   p_joint 2.600000e-05

Joint ci ratio: 6.197980e-01	ci left: 1.836616e-05	ci right 3.530731e-05	k: 39	n:1510000
Cons ci ratio: 2.980344e-03	ci left: 5.331503e-01	ci right 5.347423e-01	k: 806259	n:1510000
KS ci ratio: 8.993037e-01	ci left: 7.064876e-06	ci right 1.883951e-05	k: 18	n:1510000
IFNA10   1510000 perm   1123 sec   (1345 perm/sec)   p_kst 1.192053e-05   p_cons 5.339464e-01   p_joint 2.582781e-05

Joint ci ratio: 6.197981e-01	ci left: 1.824533e-05	ci right 3.507502e-05	k: 39	n:1520000
Cons ci ratio: 2.970510e-03	ci left: 5.331553e-01	ci right 5.347420e-01	k: 811602	n:1520000
KS ci ratio: 8.993038e-01	ci left: 7.018397e-06	ci right 1.871557e-05	k: 18	n:1520000
IFNA10   1520000 perm   1136 sec   (1338 perm/sec)   p_kst 1.184211e-05   p_cons 5.339487e-01   p_joint 2.565789e-05

Joint ci ratio: 6.048606e-01	ci left: 1.923033e-05	ci right 3.635351e-05	k: 41	n:1530000
Cons ci ratio: 2.960757e-03	ci left: 5.331628e-01	ci right 5.347443e-01	k: 816949	n:1530000
KS ci ratio: 8.993038e-01	ci left: 6.972525e-06	ci right 1.859324e-05	k: 18	n:1530000
IFNA10   1530000 perm   1149 sec   (1331 perm/sec)   p_kst 1.176471e-05   p_cons 5.339536e-01   p_joint 2.679739e-05

Joint ci ratio: 6.048607e-01	ci left: 1.910546e-05	ci right 3.611745e-05	k: 41	n:1540000
Cons ci ratio: 2.950854e-03	ci left: 5.332117e-01	ci right 5.347881e-01	k: 822360	n:1540000
KS ci ratio: 8.993038e-01	ci left: 6.927249e-06	ci right 1.847251e-05	k: 18	n:1540000
IFNA10   1540000 perm   1163 sec   (1325 perm/sec)   p_kst 1.168831e-05   p_cons 5.340000e-01   p_joint 2.662338e-05

Joint ci ratio: 6.048607e-01	ci left: 1.898220e-05	ci right 3.588443e-05	k: 41	n:1550000
Cons ci ratio: 2.941209e-03	ci left: 5.332330e-01	ci right 5.348043e-01	k: 827729	n:1550000
KS ci ratio: 8.993039e-01	ci left: 6.882556e-06	ci right 1.835333e-05	k: 18	n:1550000
IFNA10   1550000 perm   1176 sec   (1319 perm/sec)   p_kst 1.161290e-05   p_cons 5.340187e-01   p_joint 2.645161e-05

Joint ci ratio: 5.977860e-01	ci left: 1.940385e-05	ci right 3.639201e-05	k: 42	n:1560000
Cons ci ratio: 2.932243e-03	ci left: 5.331546e-01	ci right 5.347209e-01	k: 832943	n:1560000
KS ci ratio: 8.765327e-01	ci left: 7.332862e-06	ci right 1.901971e-05	k: 19	n:1560000
IFNA10   1560000 perm   1189 sec   (1312 perm/sec)   p_kst 1.217949e-05   p_cons 5.339378e-01   p_joint 2.692308e-05

Joint ci ratio: 5.977860e-01	ci left: 1.928026e-05	ci right 3.616021e-05	k: 42	n:1570000
Cons ci ratio: 2.922730e-03	ci left: 5.331843e-01	ci right 5.347455e-01	k: 838325	n:1570000
KS ci ratio: 8.765328e-01	ci left: 7.286156e-06	ci right 1.889857e-05	k: 19	n:1570000
IFNA10   1570000 perm   1202 sec   (1306 perm/sec)   p_kst 1.210191e-05   p_cons 5.339650e-01   p_joint 2.675159e-05

Joint ci ratio: 5.977861e-01	ci left: 1.915823e-05	ci right 3.593135e-05	k: 42	n:1580000
Cons ci ratio: 2.913628e-03	ci left: 5.331591e-01	ci right 5.347154e-01	k: 843621	n:1580000
KS ci ratio: 8.765328e-01	ci left: 7.240041e-06	ci right 1.877896e-05	k: 19	n:1580000
IFNA10   1580000 perm   1215 sec   (1301 perm/sec)   p_kst 1.202532e-05   p_cons 5.339373e-01   p_joint 2.658228e-05

Joint ci ratio: 5.977861e-01	ci left: 1.903774e-05	ci right 3.570537e-05	k: 42	n:1590000
Cons ci ratio: 2.904108e-03	ci left: 5.332205e-01	ci right 5.347719e-01	k: 849054	n:1590000
KS ci ratio: 8.765329e-01	ci left: 7.194506e-06	ci right 1.866085e-05	k: 19	n:1590000
IFNA10   1590000 perm   1229 sec   (1294 perm/sec)   p_kst 1.194969e-05   p_cons 5.339962e-01   p_joint 2.641509e-05

Joint ci ratio: 5.977862e-01	ci left: 1.891875e-05	ci right 3.548221e-05	k: 42	n:1600000
Cons ci ratio: 2.895298e-03	ci left: 5.331748e-01	ci right 5.347213e-01	k: 854317	n:1600000
KS ci ratio: 8.765329e-01	ci left: 7.149540e-06	ci right 1.854422e-05	k: 19	n:1600000
IFNA10   1600000 perm   1242 sec   (1288 perm/sec)   p_kst 1.187500e-05   p_cons 5.339481e-01   p_joint 2.625000e-05

Joint ci ratio: 5.977862e-01	ci left: 1.880125e-05	ci right 3.526183e-05	k: 42	n:1610000
Cons ci ratio: 2.886219e-03	ci left: 5.331899e-01	ci right 5.347317e-01	k: 859677	n:1610000
KS ci ratio: 8.765329e-01	ci left: 7.105133e-06	ci right 1.842904e-05	k: 19	n:1610000
IFNA10   1610000 perm   1256 sec   (1282 perm/sec)   p_kst 1.180124e-05   p_cons 5.339609e-01   p_joint 2.608696e-05

Joint ci ratio: 5.977863e-01	ci left: 1.868519e-05	ci right 3.504416e-05	k: 42	n:1620000
Cons ci ratio: 2.877363e-03	ci left: 5.331808e-01	ci right 5.347178e-01	k: 864998	n:1620000
KS ci ratio: 8.765330e-01	ci left: 7.061274e-06	ci right 1.831528e-05	k: 19	n:1620000
IFNA10   1620000 perm   1270 sec   (1276 perm/sec)   p_kst 1.172840e-05   p_cons 5.339494e-01   p_joint 2.592593e-05

Joint ci ratio: 5.977863e-01	ci left: 1.857056e-05	ci right 3.482917e-05	k: 42	n:1630000
Cons ci ratio: 2.868391e-03	ci left: 5.332062e-01	ci right 5.347384e-01	k: 870375	n:1630000
KS ci ratio: 8.765330e-01	ci left: 7.017953e-06	ci right 1.820292e-05	k: 19	n:1630000
IFNA10   1630000 perm   1284 sec   (1270 perm/sec)   p_kst 1.165644e-05   p_cons 5.339724e-01   p_joint 2.576687e-05

Joint ci ratio: 5.977864e-01	ci left: 1.845732e-05	ci right 3.461679e-05	k: 42	n:1640000
Cons ci ratio: 2.859642e-03	ci left: 5.332069e-01	ci right 5.347344e-01	k: 875712	n:1640000
KS ci ratio: 8.765330e-01	ci left: 6.975161e-06	ci right 1.809193e-05	k: 19	n:1640000
IFNA10   1640000 perm   1298 sec   (1264 perm/sec)   p_kst 1.158537e-05   p_cons 5.339707e-01   p_joint 2.560976e-05

Joint ci ratio: 5.977864e-01	ci left: 1.834546e-05	ci right 3.440700e-05	k: 42	n:1650000
Cons ci ratio: 2.851111e-03	ci left: 5.331833e-01	ci right 5.347062e-01	k: 881009	n:1650000
KS ci ratio: 8.765331e-01	ci left: 6.932887e-06	ci right 1.798228e-05	k: 19	n:1650000
IFNA10   1650000 perm   1312 sec   (1258 perm/sec)   p_kst 1.151515e-05   p_cons 5.339448e-01   p_joint 2.545455e-05

Joint ci ratio: 5.977865e-01	ci left: 1.823494e-05	ci right 3.419973e-05	k: 42	n:1660000
Cons ci ratio: 2.842440e-03	ci left: 5.331980e-01	ci right 5.347163e-01	k: 886369	n:1660000
KS ci ratio: 8.765331e-01	ci left: 6.891123e-06	ci right 1.787395e-05	k: 19	n:1660000
IFNA10   1660000 perm   1326 sec   (1252 perm/sec)   p_kst 1.144578e-05   p_cons 5.339572e-01   p_joint 2.530120e-05

Joint ci ratio: 5.977865e-01	ci left: 1.812575e-05	ci right 3.399494e-05	k: 42	n:1670000
Cons ci ratio: 2.833854e-03	ci left: 5.332113e-01	ci right 5.347251e-01	k: 891727	n:1670000
KS ci ratio: 8.765331e-01	ci left: 6.849858e-06	ci right 1.776692e-05	k: 19	n:1670000
IFNA10   1670000 perm   1340 sec   (1246 perm/sec)   p_kst 1.137725e-05   p_cons 5.339683e-01   p_joint 2.514970e-05

Joint ci ratio: 5.909543e-01	ci left: 1.852346e-05	ci right 3.447646e-05	k: 43	n:1680000
Cons ci ratio: 2.825521e-03	ci left: 5.331935e-01	ci right 5.347028e-01	k: 897033	n:1680000
KS ci ratio: 8.554085e-01	ci left: 7.271753e-06	ci right 1.838588e-05	k: 20	n:1680000
IFNA10   1680000 perm   1355 sec   (1240 perm/sec)   p_kst 1.190476e-05   p_cons 5.339482e-01   p_joint 2.559524e-05

Joint ci ratio: 5.909544e-01	ci left: 1.841385e-05	ci right 3.427246e-05	k: 43	n:1690000
Cons ci ratio: 2.817004e-03	ci left: 5.332215e-01	ci right 5.347263e-01	k: 902416	n:1690000
KS ci ratio: 8.554086e-01	ci left: 7.228724e-06	ci right 1.827709e-05	k: 20	n:1690000
IFNA10   1690000 perm   1368 sec   (1235 perm/sec)   p_kst 1.183432e-05   p_cons 5.339740e-01   p_joint 2.544379e-05

Joint ci ratio: 5.909544e-01	ci left: 1.830554e-05	ci right 3.407086e-05	k: 43	n:1700000
Cons ci ratio: 2.808719e-03	ci left: 5.332215e-01	ci right 5.347219e-01	k: 907752	n:1700000
KS ci ratio: 8.554086e-01	ci left: 7.186202e-06	ci right 1.816958e-05	k: 20	n:1700000
IFNA10   1700000 perm   1382 sec   (1230 perm/sec)   p_kst 1.176471e-05   p_cons 5.339718e-01   p_joint 2.529412e-05

Joint ci ratio: 5.909545e-01	ci left: 1.819849e-05	ci right 3.387162e-05	k: 43	n:1710000
Cons ci ratio: 2.800595e-03	ci left: 5.332058e-01	ci right 5.347017e-01	k: 913061	n:1710000
KS ci ratio: 8.554086e-01	ci left: 7.144178e-06	ci right 1.806332e-05	k: 20	n:1710000
IFNA10   1710000 perm   1397 sec   (1224 perm/sec)   p_kst 1.169591e-05   p_cons 5.339538e-01   p_joint 2.514620e-05

Joint ci ratio: 5.909545e-01	ci left: 1.809268e-05	ci right 3.367469e-05	k: 43	n:1720000
Cons ci ratio: 2.792698e-03	ci left: 5.331623e-01	ci right 5.346539e-01	k: 918322	n:1720000
KS ci ratio: 8.554087e-01	ci left: 7.102642e-06	ci right 1.795830e-05	k: 20	n:1720000
IFNA10   1720000 perm   1411 sec   (1219 perm/sec)   p_kst 1.162791e-05   p_cons 5.339081e-01   p_joint 2.500000e-05

Joint ci ratio: 5.843513e-01	ci left: 1.848010e-05	ci right 3.414317e-05	k: 44	n:1730000
Cons ci ratio: 2.784641e-03	ci left: 5.331598e-01	ci right 5.346471e-01	k: 923653	n:1730000
KS ci ratio: 8.357413e-01	ci left: 7.514079e-06	ci right 1.855528e-05	k: 21	n:1730000
IFNA10   1730000 perm   1426 sec   (1213 perm/sec)   p_kst 1.213873e-05   p_cons 5.339035e-01   p_joint 2.543353e-05

Joint ci ratio: 5.843514e-01	ci left: 1.837389e-05	ci right 3.394695e-05	k: 44	n:1740000
Cons ci ratio: 2.776548e-03	ci left: 5.331763e-01	ci right 5.346593e-01	k: 929017	n:1740000
KS ci ratio: 8.357413e-01	ci left: 7.470895e-06	ci right 1.844864e-05	k: 21	n:1740000
IFNA10   1740000 perm   1441 sec   (1208 perm/sec)   p_kst 1.206897e-05   p_cons 5.339178e-01   p_joint 2.528736e-05

Joint ci ratio: 5.843514e-01	ci left: 1.826890e-05	ci right 3.375297e-05	k: 44	n:1750000
Cons ci ratio: 2.768871e-03	ci left: 5.331303e-01	ci right 5.346090e-01	k: 934272	n:1750000
KS ci ratio: 8.357413e-01	ci left: 7.428204e-06	ci right 1.834322e-05	k: 21	n:1750000
IFNA10   1750000 perm   1456 sec   (1202 perm/sec)   p_kst 1.200000e-05   p_cons 5.338697e-01   p_joint 2.514286e-05

Joint ci ratio: 5.843515e-01	ci left: 1.816510e-05	ci right 3.356119e-05	k: 44	n:1760000
Cons ci ratio: 2.760927e-03	ci left: 5.331445e-01	ci right 5.346190e-01	k: 939632	n:1760000
KS ci ratio: 8.357413e-01	ci left: 7.385998e-06	ci right 1.823899e-05	k: 21	n:1760000
IFNA10   1760000 perm   1471 sec   (1197 perm/sec)   p_kst 1.193182e-05   p_cons 5.338818e-01   p_joint 2.500000e-05

Joint ci ratio: 5.843515e-01	ci left: 1.806247e-05	ci right 3.337158e-05	k: 44	n:1770000
Cons ci ratio: 2.752900e-03	ci left: 5.331857e-01	ci right 5.346560e-01	k: 945040	n:1770000
KS ci ratio: 8.357414e-01	ci left: 7.344269e-06	ci right 1.813595e-05	k: 21	n:1770000
IFNA10   1770000 perm   1486 sec   (1191 perm/sec)   p_kst 1.186441e-05   p_cons 5.339209e-01   p_joint 2.485876e-05

Joint ci ratio: 5.843515e-01	ci left: 1.796099e-05	ci right 3.318410e-05	k: 44	n:1780000
Cons ci ratio: 2.745052e-03	ci left: 5.332067e-01	ci right 5.346729e-01	k: 950413	n:1780000
KS ci ratio: 8.357414e-01	ci left: 7.303009e-06	ci right 1.803406e-05	k: 21	n:1780000
IFNA10   1780000 perm   1501 sec   (1186 perm/sec)   p_kst 1.179775e-05   p_cons 5.339399e-01   p_joint 2.471910e-05

Joint ci ratio: 5.717831e-01	ci left: 1.881446e-05	ci right 3.427782e-05	k: 46	n:1790000
Cons ci ratio: 2.737245e-03	ci left: 5.332320e-01	ci right 5.346941e-01	k: 955794	n:1790000
KS ci ratio: 8.001611e-01	ci left: 8.145283e-06	ci right 1.927999e-05	k: 23	n:1790000
IFNA10   1790000 perm   1515 sec   (1181 perm/sec)   p_kst 1.284916e-05   p_cons 5.339631e-01   p_joint 2.569832e-05

Joint ci ratio: 5.657956e-01	ci left: 1.918552e-05	ci right 3.472209e-05	k: 47	n:1800000
Cons ci ratio: 2.729356e-03	ci left: 5.332843e-01	ci right 5.347423e-01	k: 961224	n:1800000
KS ci ratio: 8.001611e-01	ci left: 8.100032e-06	ci right 1.917288e-05	k: 23	n:1800000
IFNA10   1800000 perm   1530 sec   (1176 perm/sec)   p_kst 1.277778e-05   p_cons 5.340133e-01   p_joint 2.611111e-05

Joint ci ratio: 5.657956e-01	ci left: 1.907953e-05	ci right 3.453026e-05	k: 47	n:1810000
Cons ci ratio: 2.721752e-03	ci left: 5.332961e-01	ci right 5.347502e-01	k: 966582	n:1810000
KS ci ratio: 8.001611e-01	ci left: 8.055280e-06	ci right 1.906695e-05	k: 23	n:1810000
IFNA10   1810000 perm   1546 sec   (1171 perm/sec)   p_kst 1.270718e-05   p_cons 5.340232e-01   p_joint 2.596685e-05

Joint ci ratio: 5.543639e-01	ci left: 1.991790e-05	ci right 3.559358e-05	k: 49	n:1820000
Cons ci ratio: 2.714232e-03	ci left: 5.333041e-01	ci right 5.347541e-01	k: 971933	n:1820000
KS ci ratio: 7.839944e-01	ci left: 8.449058e-06	ci right 1.962087e-05	k: 24	n:1820000
IFNA10   1820000 perm   1561 sec   (1166 perm/sec)   p_kst 1.318681e-05   p_cons 5.340291e-01   p_joint 2.692308e-05

Joint ci ratio: 5.543640e-01	ci left: 1.980906e-05	ci right 3.539908e-05	k: 49	n:1830000
Cons ci ratio: 2.706941e-03	ci left: 5.332813e-01	ci right 5.347273e-01	k: 977228	n:1830000
KS ci ratio: 7.839944e-01	ci left: 8.402888e-06	ci right 1.951365e-05	k: 24	n:1830000
IFNA10   1830000 perm   1576 sec   (1161 perm/sec)   p_kst 1.311475e-05   p_cons 5.340044e-01   p_joint 2.677596e-05

Joint ci ratio: 5.489020e-01	ci left: 2.016907e-05	ci right 3.582526e-05	k: 50	n:1840000
Cons ci ratio: 2.699681e-03	ci left: 5.332637e-01	ci right 5.347058e-01	k: 982532	n:1840000
KS ci ratio: 7.687696e-01	ci left: 8.792781e-06	ci right 2.005696e-05	k: 25	n:1840000
IFNA10   1840000 perm   1591 sec   (1156 perm/sec)   p_kst 1.358696e-05   p_cons 5.339848e-01   p_joint 2.717391e-05

Joint ci ratio: 5.489021e-01	ci left: 2.006004e-05	ci right 3.563161e-05	k: 50	n:1850000
Cons ci ratio: 2.692392e-03	ci left: 5.332625e-01	ci right 5.347007e-01	k: 987866	n:1850000
KS ci ratio: 7.687696e-01	ci left: 8.745252e-06	ci right 1.994855e-05	k: 25	n:1850000
IFNA10   1850000 perm   1607 sec   (1152 perm/sec)   p_kst 1.351351e-05   p_cons 5.339816e-01   p_joint 2.702703e-05

Joint ci ratio: 5.384456e-01	ci left: 2.087969e-05	ci right 3.666171e-05	k: 52	n:1860000
Cons ci ratio: 2.685208e-03	ci left: 5.332527e-01	ci right 5.346870e-01	k: 993184	n:1860000
KS ci ratio: 7.687697e-01	ci left: 8.698234e-06	ci right 1.984130e-05	k: 25	n:1860000
IFNA10   1860000 perm   1622 sec   (1147 perm/sec)   p_kst 1.344086e-05   p_cons 5.339699e-01   p_joint 2.795699e-05

Joint ci ratio: 5.384456e-01	ci left: 2.076803e-05	ci right 3.646566e-05	k: 52	n:1870000
Cons ci ratio: 2.677848e-03	ci left: 5.332863e-01	ci right 5.347168e-01	k: 998583	n:1870000
KS ci ratio: 7.687697e-01	ci left: 8.651720e-06	ci right 1.973519e-05	k: 25	n:1870000
IFNA10   1870000 perm   1639 sec   (1141 perm/sec)   p_kst 1.336898e-05   p_cons 5.340016e-01   p_joint 2.780749e-05

Joint ci ratio: 5.334366e-01	ci left: 2.111743e-05	ci right 3.687500e-05	k: 53	n:1880000
Cons ci ratio: 2.671010e-03	ci left: 5.332334e-01	ci right 5.346601e-01	k: 1003820	n:1880000
KS ci ratio: 7.687697e-01	ci left: 8.605700e-06	ci right 1.963022e-05	k: 25	n:1880000
IFNA10   1880000 perm   1655 sec   (1136 perm/sec)   p_kst 1.329787e-05   p_cons 5.339468e-01   p_joint 2.819149e-05

Joint ci ratio: 5.334367e-01	ci left: 2.100570e-05	ci right 3.667990e-05	k: 53	n:1890000
Cons ci ratio: 2.663947e-03	ci left: 5.332329e-01	ci right 5.346558e-01	k: 1009155	n:1890000
KS ci ratio: 7.687698e-01	ci left: 8.560167e-06	ci right 1.952636e-05	k: 25	n:1890000
IFNA10   1890000 perm   1670 sec   (1131 perm/sec)   p_kst 1.322751e-05   p_cons 5.339444e-01   p_joint 2.804233e-05

Joint ci ratio: 5.334367e-01	ci left: 2.089514e-05	ci right 3.648685e-05	k: 53	n:1900000
Cons ci ratio: 2.656671e-03	ci left: 5.332830e-01	ci right 5.347022e-01	k: 1014586	n:1900000
KS ci ratio: 7.687698e-01	ci left: 8.515113e-06	ci right 1.942359e-05	k: 25	n:1900000
IFNA10   1900000 perm   1686 sec   (1127 perm/sec)   p_kst 1.315789e-05   p_cons 5.339926e-01   p_joint 2.789474e-05

Joint ci ratio: 5.334368e-01	ci left: 2.078574e-05	ci right 3.629582e-05	k: 53	n:1910000
Cons ci ratio: 2.649562e-03	ci left: 5.333121e-01	ci right 5.347276e-01	k: 1019978	n:1910000
KS ci ratio: 7.687698e-01	ci left: 8.470531e-06	ci right 1.932189e-05	k: 25	n:1910000
IFNA10   1910000 perm   1702 sec   (1122 perm/sec)   p_kst 1.308901e-05   p_cons 5.340199e-01   p_joint 2.774869e-05

Joint ci ratio: 5.334368e-01	ci left: 2.067748e-05	ci right 3.610678e-05	k: 53	n:1920000
Cons ci ratio: 2.642825e-03	ci left: 5.332816e-01	ci right 5.346933e-01	k: 1025256	n:1920000
KS ci ratio: 7.687698e-01	ci left: 8.426414e-06	ci right 1.922126e-05	k: 25	n:1920000
IFNA10   1920000 perm   1718 sec   (1117 perm/sec)   p_kst 1.302083e-05   p_cons 5.339875e-01   p_joint 2.760417e-05

Joint ci ratio: 5.657961e-01	ci left: 1.789323e-05	ci right 3.238331e-05	k: 47	n:1930000
Cons ci ratio: 2.635815e-03	ci left: 5.333125e-01	ci right 5.347206e-01	k: 1030652	n:1930000
KS ci ratio: 7.687699e-01	ci left: 8.382754e-06	ci right 1.912167e-05	k: 25	n:1930000
IFNA10   1930000 perm   1734 sec   (1113 perm/sec)   p_kst 1.295337e-05   p_cons 5.340166e-01   p_joint 2.435233e-05

Joint ci ratio: 5.657961e-01	ci left: 1.780100e-05	ci right 3.221638e-05	k: 47	n:1940000
Cons ci ratio: 2.628937e-03	ci left: 5.333287e-01	ci right 5.347331e-01	k: 1036020	n:1940000
KS ci ratio: 7.687699e-01	ci left: 8.339544e-06	ci right 1.902310e-05	k: 25	n:1940000
IFNA10   1940000 perm   1750 sec   (1108 perm/sec)   p_kst 1.288660e-05   p_cons 5.340309e-01   p_joint 2.422680e-05

Joint ci ratio: 5.657962e-01	ci left: 1.770971e-05	ci right 3.205117e-05	k: 47	n:1950000
Cons ci ratio: 2.622399e-03	ci left: 5.332903e-01	ci right 5.346911e-01	k: 1041282	n:1950000
KS ci ratio: 7.687699e-01	ci left: 8.296777e-06	ci right 1.892555e-05	k: 25	n:1950000
IFNA10   1950000 perm   1766 sec   (1104 perm/sec)   p_kst 1.282051e-05   p_cons 5.339908e-01   p_joint 2.410256e-05

Joint ci ratio: 5.657962e-01	ci left: 1.761935e-05	ci right 3.188765e-05	k: 47	n:1960000
Cons ci ratio: 2.615870e-03	ci left: 5.332600e-01	ci right 5.346572e-01	k: 1046559	n:1960000
KS ci ratio: 7.687700e-01	ci left: 8.254446e-06	ci right 1.882899e-05	k: 25	n:1960000
IFNA10   1960000 perm   1783 sec   (1099 perm/sec)   p_kst 1.275510e-05   p_cons 5.339587e-01   p_joint 2.397959e-05

Joint ci ratio: 5.599929e-01	ci left: 1.796524e-05	ci right 3.230497e-05	k: 48	n:1970000
Cons ci ratio: 2.609176e-03	ci left: 5.332706e-01	ci right 5.346643e-01	k: 1051916	n:1970000
KS ci ratio: 7.687700e-01	ci left: 8.212545e-06	ci right 1.873341e-05	k: 25	n:1970000
IFNA10   1970000 perm   1799 sec   (1095 perm/sec)   p_kst 1.269036e-05   p_cons 5.339675e-01   p_joint 2.436548e-05

Joint ci ratio: 5.543646e-01	ci left: 1.830837e-05	ci right 3.271734e-05	k: 49	n:1980000
Cons ci ratio: 2.602411e-03	ci left: 5.333044e-01	ci right 5.346945e-01	k: 1057319	n:1980000
KS ci ratio: 7.687700e-01	ci left: 8.171068e-06	ci right 1.863880e-05	k: 25	n:1980000
IFNA10   1980000 perm   1815 sec   (1091 perm/sec)   p_kst 1.262626e-05   p_cons 5.339995e-01   p_joint 2.474747e-05

Joint ci ratio: 5.543646e-01	ci left: 1.821637e-05	ci right 3.255294e-05	k: 49	n:1990000
Cons ci ratio: 2.595906e-03	ci left: 5.332981e-01	ci right 5.346847e-01	k: 1062643	n:1990000
KS ci ratio: 7.687700e-01	ci left: 8.130007e-06	ci right 1.854514e-05	k: 25	n:1990000
IFNA10   1990000 perm   1831 sec   (1087 perm/sec)   p_kst 1.256281e-05   p_cons 5.339915e-01   p_joint 2.462312e-05

Joint ci ratio: 5.543646e-01	ci left: 1.812529e-05	ci right 3.239017e-05	k: 49	n:2000000
Cons ci ratio: 2.589510e-03	ci left: 5.332804e-01	ci right 5.346636e-01	k: 1067944	n:2000000
KS ci ratio: 7.687701e-01	ci left: 8.089357e-06	ci right 1.845241e-05	k: 25	n:2000000
IFNA10   2000000 perm   1848 sec   (1082 perm/sec)   p_kst 1.250000e-05   p_cons 5.339720e-01   p_joint 2.450000e-05

Joint ci ratio: 5.543647e-01	ci left: 1.803511e-05	ci right 3.222903e-05	k: 49	n:2010000
Cons ci ratio: 2.583341e-03	ci left: 5.332280e-01	ci right 5.346077e-01	k: 1073175	n:2010000
KS ci ratio: 7.687701e-01	ci left: 8.049111e-06	ci right 1.836061e-05	k: 25	n:2010000
IFNA10   2010000 perm   1864 sec   (1078 perm/sec)   p_kst 1.243781e-05   p_cons 5.339179e-01   p_joint 2.437811e-05

Joint ci ratio: 5.543647e-01	ci left: 1.794583e-05	ci right 3.206948e-05	k: 49	n:2020000
Cons ci ratio: 2.576862e-03	ci left: 5.332445e-01	ci right 5.346208e-01	k: 1078544	n:2020000
KS ci ratio: 7.687701e-01	ci left: 8.009264e-06	ci right 1.826971e-05	k: 25	n:2020000
IFNA10   2020000 perm   1881 sec   (1074 perm/sec)   p_kst 1.237624e-05   p_cons 5.339327e-01   p_joint 2.425743e-05

Joint ci ratio: 5.543648e-01	ci left: 1.785743e-05	ci right 3.191150e-05	k: 49	n:2030000
Cons ci ratio: 2.570516e-03	ci left: 5.332445e-01	ci right 5.346175e-01	k: 1083880	n:2030000
KS ci ratio: 7.687701e-01	ci left: 7.969809e-06	ci right 1.817972e-05	k: 25	n:2030000
IFNA10   2030000 perm   1898 sec   (1070 perm/sec)   p_kst 1.231527e-05   p_cons 5.339310e-01   p_joint 2.413793e-05

Joint ci ratio: 6.121948e-01	ci left: 1.400817e-05	ci right 2.670022e-05	k: 40	n:2040000
Cons ci ratio: 2.564494e-03	ci left: 5.331906e-01	ci right 5.345602e-01	k: 1089106	n:2040000
KS ci ratio: 7.687702e-01	ci left: 7.930742e-06	ci right 1.809060e-05	k: 25	n:2040000
IFNA10   2040000 perm   1914 sec   (1066 perm/sec)   p_kst 1.225490e-05   p_cons 5.338755e-01   p_joint 1.960784e-05

Joint ci ratio: 6.048628e-01	ci left: 1.435238e-05	ci right 2.713216e-05	k: 41	n:2050000
Cons ci ratio: 2.558266e-03	ci left: 5.331856e-01	ci right 5.345519e-01	k: 1094431	n:2050000
KS ci ratio: 7.687702e-01	ci left: 7.892055e-06	ci right 1.800235e-05	k: 25	n:2050000
IFNA10   2050000 perm   1931 sec   (1061 perm/sec)   p_kst 1.219512e-05   p_cons 5.338688e-01   p_joint 2.000000e-05

Joint ci ratio: 6.048628e-01	ci left: 1.428271e-05	ci right 2.700045e-05	k: 41	n:2060000
Cons ci ratio: 2.552215e-03	ci left: 5.331549e-01	ci right 5.345178e-01	k: 1099703	n:2060000
KS ci ratio: 7.687702e-01	ci left: 7.853744e-06	ci right 1.791496e-05	k: 25	n:2060000
IFNA10   2060000 perm   1948 sec   (1057 perm/sec)   p_kst 1.213592e-05   p_cons 5.338364e-01   p_joint 1.990291e-05

Joint ci ratio: 6.048628e-01	ci left: 1.421371e-05	ci right 2.687002e-05	k: 41	n:2070000
Cons ci ratio: 2.546029e-03	ci left: 5.331593e-01	ci right 5.345189e-01	k: 1105047	n:2070000
KS ci ratio: 7.687702e-01	ci left: 7.815803e-06	ci right 1.782842e-05	k: 25	n:2070000
IFNA10   2070000 perm   1966 sec   (1053 perm/sec)   p_kst 1.207729e-05   p_cons 5.338391e-01   p_joint 1.980676e-05

Joint ci ratio: 7.040474e-01	ci left: 9.731210e-06	ci right 2.058978e-05	k: 30	n:2080000
Cons ci ratio: 2.539983e-03	ci left: 5.331449e-01	ci right 5.345012e-01	k: 1110352	n:2080000
KS ci ratio: 7.687703e-01	ci left: 7.778227e-06	ci right 1.774270e-05	k: 25	n:2080000
IFNA10   2080000 perm   1983 sec   (1049 perm/sec)   p_kst 1.201923e-05   p_cons 5.338231e-01   p_joint 1.442308e-05

Joint ci ratio: 7.040474e-01	ci left: 9.684649e-06	ci right 2.049126e-05	k: 30	n:2090000
Cons ci ratio: 2.533873e-03	ci left: 5.331516e-01	ci right 5.345047e-01	k: 1115701	n:2090000
KS ci ratio: 7.687703e-01	ci left: 7.741011e-06	ci right 1.765781e-05	k: 25	n:2090000
IFNA10   2090000 perm   2000 sec   (1045 perm/sec)   p_kst 1.196172e-05   p_cons 5.338282e-01   p_joint 1.435407e-05

Joint ci ratio: 7.040474e-01	ci left: 9.638532e-06	ci right 2.039368e-05	k: 30	n:2100000
Cons ci ratio: 2.527911e-03	ci left: 5.331379e-01	ci right 5.344878e-01	k: 1121007	n:2100000
KS ci ratio: 7.687703e-01	ci left: 7.704149e-06	ci right 1.757373e-05	k: 25	n:2100000
IFNA10   2100000 perm   2018 sec   (1041 perm/sec)   p_kst 1.190476e-05   p_cons 5.338129e-01   p_joint 1.428571e-05

Joint ci ratio: 7.040474e-01	ci left: 9.592851e-06	ci right 2.029703e-05	k: 30	n:2110000
Cons ci ratio: 2.521957e-03	ci left: 5.331309e-01	ci right 5.344776e-01	k: 1126327	n:2110000
KS ci ratio: 7.687703e-01	ci left: 7.667636e-06	ci right 1.749044e-05	k: 25	n:2110000
IFNA10   2110000 perm   2035 sec   (1037 perm/sec)   p_kst 1.184834e-05   p_cons 5.338043e-01   p_joint 1.421801e-05

Joint ci ratio: 7.040475e-01	ci left: 9.547602e-06	ci right 2.020129e-05	k: 30	n:2120000
Cons ci ratio: 2.515947e-03	ci left: 5.331433e-01	ci right 5.344868e-01	k: 1131688	n:2120000
KS ci ratio: 7.687704e-01	ci left: 7.631468e-06	ci right 1.740794e-05	k: 25	n:2120000
IFNA10   2120000 perm   2053 sec   (1033 perm/sec)   p_kst 1.179245e-05   p_cons 5.338151e-01   p_joint 1.415094e-05

Joint ci ratio: 7.040475e-01	ci left: 9.502777e-06	ci right 2.010645e-05	k: 30	n:2130000
Cons ci ratio: 2.510198e-03	ci left: 5.331124e-01	ci right 5.344528e-01	k: 1136957	n:2130000
KS ci ratio: 7.687704e-01	ci left: 7.595639e-06	ci right 1.732621e-05	k: 25	n:2130000
IFNA10   2130000 perm   2070 sec   (1029 perm/sec)   p_kst 1.173709e-05   p_cons 5.337826e-01   p_joint 1.408451e-05

Joint ci ratio: 7.040475e-01	ci left: 9.458372e-06	ci right 2.001249e-05	k: 30	n:2140000
Cons ci ratio: 2.504161e-03	ci left: 5.331468e-01	ci right 5.344840e-01	k: 1142365	n:2140000
KS ci ratio: 7.687704e-01	ci left: 7.560146e-06	ci right 1.724525e-05	k: 25	n:2140000
IFNA10   2140000 perm   2088 sec   (1025 perm/sec)   p_kst 1.168224e-05   p_cons 5.338154e-01   p_joint 1.401869e-05

Joint ci ratio: 7.040475e-01	ci left: 9.414379e-06	ci right 1.991941e-05	k: 30	n:2150000
Cons ci ratio: 2.498408e-03	ci left: 5.331329e-01	ci right 5.344670e-01	k: 1147670	n:2150000
KS ci ratio: 7.687704e-01	ci left: 7.524982e-06	ci right 1.716504e-05	k: 25	n:2150000
IFNA10   2150000 perm   2106 sec   (1021 perm/sec)   p_kst 1.162791e-05   p_cons 5.338000e-01   p_joint 1.395349e-05

Joint ci ratio: 7.040476e-01	ci left: 9.370794e-06	ci right 1.982719e-05	k: 30	n:2160000
Cons ci ratio: 2.492820e-03	ci left: 5.330942e-01	ci right 5.344252e-01	k: 1152921	n:2160000
KS ci ratio: 7.687704e-01	ci left: 7.490144e-06	ci right 1.708557e-05	k: 25	n:2160000
IFNA10   2160000 perm   2123 sec   (1017 perm/sec)   p_kst 1.157407e-05   p_cons 5.337597e-01   p_joint 1.388889e-05

Joint ci ratio: 7.040476e-01	ci left: 9.327611e-06	ci right 1.973582e-05	k: 30	n:2170000
Cons ci ratio: 2.487016e-03	ci left: 5.331065e-01	ci right 5.344344e-01	k: 1158282	n:2170000
KS ci ratio: 7.687705e-01	ci left: 7.455627e-06	ci right 1.700683e-05	k: 25	n:2170000
IFNA10   2170000 perm   2141 sec   (1013 perm/sec)   p_kst 1.152074e-05   p_cons 5.337705e-01   p_joint 1.382488e-05

Joint ci ratio: 7.040476e-01	ci left: 9.284823e-06	ci right 1.964529e-05	k: 30	n:2180000
Cons ci ratio: 2.481512e-03	ci left: 5.330664e-01	ci right 5.343913e-01	k: 1163529	n:2180000
KS ci ratio: 7.687705e-01	ci left: 7.421427e-06	ci right 1.692882e-05	k: 25	n:2180000
IFNA10   2180000 perm   2159 sec   (1010 perm/sec)   p_kst 1.146789e-05   p_cons 5.337289e-01   p_joint 1.376147e-05

Joint ci ratio: 7.040476e-01	ci left: 9.242427e-06	ci right 1.955559e-05	k: 30	n:2190000
Cons ci ratio: 2.475600e-03	ci left: 5.331162e-01	ci right 5.344380e-01	k: 1168972	n:2190000
KS ci ratio: 7.687705e-01	ci left: 7.387539e-06	ci right 1.685152e-05	k: 25	n:2190000
IFNA10   2190000 perm   2177 sec   (1006 perm/sec)   p_kst 1.141553e-05   p_cons 5.337772e-01   p_joint 1.369863e-05

Joint ci ratio: 7.040477e-01	ci left: 9.200416e-06	ci right 1.946670e-05	k: 30	n:2200000
Cons ci ratio: 2.469667e-03	ci left: 5.331783e-01	ci right 5.344971e-01	k: 1174443	n:2200000
KS ci ratio: 7.687705e-01	ci left: 7.353959e-06	ci right 1.677492e-05	k: 25	n:2200000
IFNA10   2200000 perm   2195 sec   (1002 perm/sec)   p_kst 1.136364e-05   p_cons 5.338377e-01   p_joint 1.363636e-05

Joint ci ratio: 7.040477e-01	ci left: 9.158785e-06	ci right 1.937862e-05	k: 30	n:2210000
Cons ci ratio: 2.464040e-03	ci left: 5.331864e-01	ci right 5.345022e-01	k: 1179796	n:2210000
KS ci ratio: 7.687706e-01	ci left: 7.320683e-06	ci right 1.669902e-05	k: 25	n:2210000
IFNA10   2210000 perm   2213 sec   (999 perm/sec)   p_kst 1.131222e-05   p_cons 5.338443e-01   p_joint 1.357466e-05

Joint ci ratio: 7.040477e-01	ci left: 9.117529e-06	ci right 1.929133e-05	k: 30	n:2220000
Cons ci ratio: 2.458394e-03	ci left: 5.332061e-01	ci right 5.345190e-01	k: 1185175	n:2220000
KS ci ratio: 7.687706e-01	ci left: 7.287707e-06	ci right 1.662380e-05	k: 25	n:2220000
IFNA10   2220000 perm   2231 sec   (995 perm/sec)   p_kst 1.126126e-05   p_cons 5.338626e-01   p_joint 1.351351e-05

Joint ci ratio: 7.040477e-01	ci left: 9.076643e-06	ci right 1.920482e-05	k: 30	n:2230000
Cons ci ratio: 2.453052e-03	ci left: 5.331719e-01	ci right 5.344818e-01	k: 1190434	n:2230000
KS ci ratio: 7.687706e-01	ci left: 7.255027e-06	ci right 1.654925e-05	k: 25	n:2230000
IFNA10   2230000 perm   2249 sec   (992 perm/sec)   p_kst 1.121076e-05   p_cons 5.338269e-01   p_joint 1.345291e-05

Joint ci ratio: 6.929595e-01	ci left: 9.403142e-06	ci right 1.964370e-05	k: 31	n:2240000
Cons ci ratio: 2.447624e-03	ci left: 5.331625e-01	ci right 5.344695e-01	k: 1195748	n:2240000
KS ci ratio: 7.543996e-01	ci left: 7.582185e-06	ci right 1.700711e-05	k: 26	n:2240000
IFNA10   2240000 perm   2267 sec   (988 perm/sec)   p_kst 1.160714e-05   p_cons 5.338161e-01   p_joint 1.383929e-05

Joint ci ratio: 6.929596e-01	ci left: 9.361350e-06	ci right 1.955640e-05	k: 31	n:2250000
Cons ci ratio: 2.442190e-03	ci left: 5.331617e-01	ci right 5.344658e-01	k: 1201081	n:2250000
KS ci ratio: 7.543997e-01	ci left: 7.548486e-06	ci right 1.693152e-05	k: 26	n:2250000
IFNA10   2250000 perm   2285 sec   (984 perm/sec)   p_kst 1.155556e-05   p_cons 5.338138e-01   p_joint 1.377778e-05

Joint ci ratio: 6.929596e-01	ci left: 9.319928e-06	ci right 1.946987e-05	k: 31	n:2260000
Cons ci ratio: 2.436950e-03	ci left: 5.331286e-01	ci right 5.344298e-01	k: 1206341	n:2260000
KS ci ratio: 7.543997e-01	ci left: 7.515086e-06	ci right 1.685660e-05	k: 26	n:2260000
IFNA10   2260000 perm   2304 sec   (981 perm/sec)   p_kst 1.150442e-05   p_cons 5.337792e-01   p_joint 1.371681e-05

Joint ci ratio: 6.929596e-01	ci left: 9.278871e-06	ci right 1.938410e-05	k: 31	n:2270000
Cons ci ratio: 2.431767e-03	ci left: 5.330909e-01	ci right 5.343892e-01	k: 1211590	n:2270000
KS ci ratio: 7.543997e-01	ci left: 7.481979e-06	ci right 1.678234e-05	k: 26	n:2270000
IFNA10   2270000 perm   2323 sec   (977 perm/sec)   p_kst 1.145374e-05   p_cons 5.337401e-01   p_joint 1.365639e-05

Joint ci ratio: 6.929596e-01	ci left: 9.238174e-06	ci right 1.929908e-05	k: 31	n:2280000
Cons ci ratio: 2.426673e-03	ci left: 5.330421e-01	ci right 5.343376e-01	k: 1216813	n:2280000
KS ci ratio: 7.543997e-01	ci left: 7.449164e-06	ci right 1.670874e-05	k: 26	n:2280000
IFNA10   2280000 perm   2341 sec   (974 perm/sec)   p_kst 1.140351e-05   p_cons 5.336899e-01   p_joint 1.359649e-05

Joint ci ratio: 6.929597e-01	ci left: 9.197833e-06	ci right 1.921480e-05	k: 31	n:2290000
Cons ci ratio: 2.421311e-03	ci left: 5.330554e-01	ci right 5.343480e-01	k: 1222177	n:2290000
KS ci ratio: 7.543997e-01	ci left: 7.416634e-06	ci right 1.663577e-05	k: 26	n:2290000
IFNA10   2290000 perm   2360 sec   (970 perm/sec)   p_kst 1.135371e-05   p_cons 5.337017e-01   p_joint 1.353712e-05

Joint ci ratio: 6.823794e-01	ci left: 9.516530e-06	ci right 1.964101e-05	k: 32	n:2300000
Cons ci ratio: 2.415884e-03	ci left: 5.330894e-01	ci right 5.343792e-01	k: 1227589	n:2300000
KS ci ratio: 7.408057e-01	ci left: 7.736175e-06	ci right 1.707977e-05	k: 27	n:2300000
IFNA10   2300000 perm   2378 sec   (967 perm/sec)   p_kst 1.173913e-05   p_cons 5.337343e-01   p_joint 1.391304e-05

Joint ci ratio: 6.722694e-01	ci left: 9.833648e-06	ci right 2.006240e-05	k: 33	n:2310000
Cons ci ratio: 2.410601e-03	ci left: 5.331006e-01	ci right 5.343876e-01	k: 1232949	n:2310000
KS ci ratio: 7.408057e-01	ci left: 7.702685e-06	ci right 1.700583e-05	k: 27	n:2310000
IFNA10   2310000 perm   2397 sec   (964 perm/sec)   p_kst 1.168831e-05   p_cons 5.337442e-01   p_joint 1.428571e-05

Joint ci ratio: 6.722694e-01	ci left: 9.791262e-06	ci right 1.997592e-05	k: 33	n:2320000
Cons ci ratio: 2.405339e-03	ci left: 5.331147e-01	ci right 5.343990e-01	k: 1238316	n:2320000
KS ci ratio: 7.408057e-01	ci left: 7.669483e-06	ci right 1.693253e-05	k: 27	n:2320000
IFNA10   2320000 perm   2416 sec   (960 perm/sec)   p_kst 1.163793e-05   p_cons 5.337569e-01   p_joint 1.422414e-05

Joint ci ratio: 6.722694e-01	ci left: 9.749239e-06	ci right 1.989019e-05	k: 33	n:2330000
Cons ci ratio: 2.400111e-03	ci left: 5.331287e-01	ci right 5.344102e-01	k: 1243683	n:2330000
KS ci ratio: 7.408058e-01	ci left: 7.636567e-06	ci right 1.685986e-05	k: 27	n:2330000
IFNA10   2330000 perm   2435 sec   (957 perm/sec)   p_kst 1.158798e-05   p_cons 5.337695e-01   p_joint 1.416309e-05

Joint ci ratio: 6.722694e-01	ci left: 9.707575e-06	ci right 1.980519e-05	k: 33	n:2340000
Cons ci ratio: 2.395032e-03	ci left: 5.331187e-01	ci right 5.343975e-01	k: 1248994	n:2340000
KS ci ratio: 7.408058e-01	ci left: 7.603932e-06	ci right 1.678781e-05	k: 27	n:2340000
IFNA10   2340000 perm   2454 sec   (954 perm/sec)   p_kst 1.153846e-05   p_cons 5.337581e-01   p_joint 1.410256e-05

Joint ci ratio: 6.722694e-01	ci left: 9.666267e-06	ci right 1.972091e-05	k: 33	n:2350000
Cons ci ratio: 2.389872e-03	ci left: 5.331321e-01	ci right 5.344082e-01	k: 1254360	n:2350000
KS ci ratio: 7.408058e-01	ci left: 7.571575e-06	ci right 1.671637e-05	k: 27	n:2350000
IFNA10   2350000 perm   2473 sec   (950 perm/sec)   p_kst 1.148936e-05   p_cons 5.337702e-01   p_joint 1.404255e-05

Joint ci ratio: 6.722695e-01	ci left: 9.625308e-06	ci right 1.963735e-05	k: 33	n:2360000
Cons ci ratio: 2.384740e-03	ci left: 5.331468e-01	ci right 5.344201e-01	k: 1259729	n:2360000
KS ci ratio: 7.408058e-01	ci left: 7.539492e-06	ci right 1.664554e-05	k: 27	n:2360000
IFNA10   2360000 perm   2492 sec   (947 perm/sec)   p_kst 1.144068e-05   p_cons 5.337835e-01   p_joint 1.398305e-05

Joint ci ratio: 7.040480e-01	ci left: 8.540469e-06	ci right 1.807036e-05	k: 30	n:2370000
Cons ci ratio: 2.379675e-03	ci left: 5.331541e-01	ci right 5.344247e-01	k: 1265081	n:2370000
KS ci ratio: 7.408058e-01	ci left: 7.507680e-06	ci right 1.657531e-05	k: 27	n:2370000
IFNA10   2370000 perm   2512 sec   (944 perm/sec)   p_kst 1.139241e-05   p_cons 5.337895e-01   p_joint 1.265823e-05

Joint ci ratio: 7.040481e-01	ci left: 8.504585e-06	ci right 1.799443e-05	k: 30	n:2380000
Cons ci ratio: 2.374648e-03	ci left: 5.331601e-01	ci right 5.344281e-01	k: 1270430	n:2380000
KS ci ratio: 7.408059e-01	ci left: 7.476135e-06	ci right 1.650566e-05	k: 27	n:2380000
IFNA10   2380000 perm   2531 sec   (940 perm/sec)   p_kst 1.134454e-05   p_cons 5.337941e-01   p_joint 1.260504e-05

Joint ci ratio: 7.040481e-01	ci left: 8.469000e-06	ci right 1.791914e-05	k: 30	n:2390000
Cons ci ratio: 2.369619e-03	ci left: 5.331732e-01	ci right 5.344385e-01	k: 1275796	n:2390000
KS ci ratio: 7.408059e-01	ci left: 7.444854e-06	ci right 1.643660e-05	k: 27	n:2390000
IFNA10   2390000 perm   2550 sec   (937 perm/sec)   p_kst 1.129707e-05   p_cons 5.338059e-01   p_joint 1.255230e-05

Joint ci ratio: 7.040481e-01	ci left: 8.433713e-06	ci right 1.784448e-05	k: 30	n:2400000
Cons ci ratio: 2.364834e-03	ci left: 5.331415e-01	ci right 5.344042e-01	k: 1281055	n:2400000
KS ci ratio: 7.408059e-01	ci left: 7.413834e-06	ci right 1.636812e-05	k: 27	n:2400000
IFNA10   2400000 perm   2570 sec   (934 perm/sec)   p_kst 1.125000e-05   p_cons 5.337729e-01   p_joint 1.250000e-05

Joint ci ratio: 6.929599e-01	ci left: 8.739849e-06	ci right 1.825805e-05	k: 31	n:2410000
Cons ci ratio: 2.360146e-03	ci left: 5.330957e-01	ci right 5.343557e-01	k: 1286279	n:2410000
KS ci ratio: 7.279212e-01	ci left: 7.720261e-06	ci right 1.679157e-05	k: 28	n:2410000
IFNA10   2410000 perm   2590 sec   (931 perm/sec)   p_kst 1.161826e-05   p_cons 5.337257e-01   p_joint 1.286307e-05

Joint ci ratio: 6.823796e-01	ci left: 9.044635e-06	ci right 1.866708e-05	k: 32	n:2420000
Cons ci ratio: 2.355295e-03	ci left: 5.330907e-01	ci right 5.343481e-01	k: 1291601	n:2420000
KS ci ratio: 7.156862e-01	ci left: 8.025533e-06	ci right 1.721022e-05	k: 29	n:2420000
IFNA10   2420000 perm   2609 sec   (928 perm/sec)   p_kst 1.198347e-05   p_cons 5.337194e-01   p_joint 1.322314e-05

Joint ci ratio: 6.823796e-01	ci left: 9.007415e-06	ci right 1.859026e-05	k: 32	n:2430000
Cons ci ratio: 2.350446e-03	ci left: 5.330915e-01	ci right 5.343463e-01	k: 1296937	n:2430000
KS ci ratio: 7.156862e-01	ci left: 7.992506e-06	ci right 1.713939e-05	k: 29	n:2430000
IFNA10   2430000 perm   2629 sec   (924 perm/sec)   p_kst 1.193416e-05   p_cons 5.337189e-01   p_joint 1.316872e-05

Joint ci ratio: 6.823797e-01	ci left: 8.970499e-06	ci right 1.851407e-05	k: 32	n:2440000
Cons ci ratio: 2.345866e-03	ci left: 5.330414e-01	ci right 5.342937e-01	k: 1302149	n:2440000
KS ci ratio: 7.156863e-01	ci left: 7.959750e-06	ci right 1.706915e-05	k: 29	n:2440000
IFNA10   2440000 perm   2648 sec   (921 perm/sec)   p_kst 1.188525e-05   p_cons 5.336676e-01   p_joint 1.311475e-05

Joint ci ratio: 6.823797e-01	ci left: 8.933884e-06	ci right 1.843850e-05	k: 32	n:2450000
Cons ci ratio: 2.340914e-03	ci left: 5.330767e-01	ci right 5.343265e-01	k: 1307569	n:2450000
KS ci ratio: 7.156863e-01	ci left: 7.927261e-06	ci right 1.699948e-05	k: 29	n:2450000
IFNA10   2450000 perm   2667 sec   (919 perm/sec)   p_kst 1.183673e-05   p_cons 5.337016e-01   p_joint 1.306122e-05

Joint ci ratio: 6.823797e-01	ci left: 8.897568e-06	ci right 1.836355e-05	k: 32	n:2460000
Cons ci ratio: 2.336159e-03	ci left: 5.330764e-01	ci right 5.343236e-01	k: 1312902	n:2460000
KS ci ratio: 7.156863e-01	ci left: 7.895036e-06	ci right 1.693038e-05	k: 29	n:2460000
IFNA10   2460000 perm   2687 sec   (916 perm/sec)   p_kst 1.178862e-05   p_cons 5.337000e-01   p_joint 1.300813e-05

Joint ci ratio: 6.823797e-01	ci left: 8.861545e-06	ci right 1.828920e-05	k: 32	n:2470000
Cons ci ratio: 2.331216e-03	ci left: 5.331222e-01	ci right 5.343668e-01	k: 1318349	n:2470000
KS ci ratio: 7.156863e-01	ci left: 7.863072e-06	ci right 1.686183e-05	k: 29	n:2470000
IFNA10   2470000 perm   2707 sec   (912 perm/sec)   p_kst 1.174089e-05   p_cons 5.337445e-01   p_joint 1.295547e-05

Joint ci ratio: 6.823797e-01	ci left: 8.825813e-06	ci right 1.821546e-05	k: 32	n:2480000
Cons ci ratio: 2.326665e-03	ci left: 5.330906e-01	ci right 5.343327e-01	k: 1323605	n:2480000
KS ci ratio: 7.156863e-01	ci left: 7.831366e-06	ci right 1.679384e-05	k: 29	n:2480000
IFNA10   2480000 perm   2727 sec   (909 perm/sec)   p_kst 1.169355e-05   p_cons 5.337117e-01   p_joint 1.290323e-05

Joint ci ratio: 6.823798e-01	ci left: 8.790368e-06	ci right 1.814230e-05	k: 32	n:2490000
Cons ci ratio: 2.322032e-03	ci left: 5.330825e-01	ci right 5.343222e-01	k: 1328919	n:2490000
KS ci ratio: 7.156864e-01	ci left: 7.799915e-06	ci right 1.672640e-05	k: 29	n:2490000
IFNA10   2490000 perm   2747 sec   (906 perm/sec)   p_kst 1.164659e-05   p_cons 5.337024e-01   p_joint 1.285141e-05

Joint ci ratio: 6.722697e-01	ci left: 9.086290e-06	ci right 1.853766e-05	k: 33	n:2500000
Cons ci ratio: 2.317294e-03	ci left: 5.331030e-01	ci right 5.343401e-01	k: 1334304	n:2500000
KS ci ratio: 7.040483e-01	ci left: 8.096364e-06	ci right 1.713070e-05	k: 30	n:2500000
IFNA10   2500000 perm   2767 sec   (904 perm/sec)   p_kst 1.200000e-05   p_cons 5.337216e-01   p_joint 1.320000e-05

Joint ci ratio: 6.722698e-01	ci left: 9.050089e-06	ci right 1.846380e-05	k: 33	n:2510000
Cons ci ratio: 2.312799e-03	ci left: 5.330770e-01	ci right 5.343117e-01	k: 1339573	n:2510000
KS ci ratio: 7.040483e-01	ci left: 8.064107e-06	ci right 1.706245e-05	k: 30	n:2510000
IFNA10   2510000 perm   2787 sec   (901 perm/sec)   p_kst 1.195219e-05   p_cons 5.336944e-01   p_joint 1.314741e-05

Joint ci ratio: 6.722698e-01	ci left: 9.014176e-06	ci right 1.839053e-05	k: 33	n:2520000
Cons ci ratio: 2.308211e-03	ci left: 5.330771e-01	ci right 5.343093e-01	k: 1344907	n:2520000
KS ci ratio: 7.040483e-01	ci left: 8.032107e-06	ci right 1.699474e-05	k: 30	n:2520000
IFNA10   2520000 perm   2807 sec   (898 perm/sec)   p_kst 1.190476e-05   p_cons 5.336933e-01   p_joint 1.309524e-05

Joint ci ratio: 6.722698e-01	ci left: 8.978547e-06	ci right 1.831784e-05	k: 33	n:2530000
Cons ci ratio: 2.303735e-03	ci left: 5.330590e-01	ci right 5.342888e-01	k: 1350195	n:2530000
KS ci ratio: 7.040483e-01	ci left: 8.000359e-06	ci right 1.692757e-05	k: 30	n:2530000
IFNA10   2530000 perm   2828 sec   (895 perm/sec)   p_kst 1.185771e-05   p_cons 5.336739e-01   p_joint 1.304348e-05

Joint ci ratio: 6.722698e-01	ci left: 8.943198e-06	ci right 1.824573e-05	k: 33	n:2540000
Cons ci ratio: 2.299213e-03	ci left: 5.330563e-01	ci right 5.342837e-01	k: 1355522	n:2540000
KS ci ratio: 7.040483e-01	ci left: 7.968862e-06	ci right 1.686093e-05	k: 30	n:2540000
IFNA10   2540000 perm   2848 sec   (892 perm/sec)   p_kst 1.181102e-05   p_cons 5.336701e-01   p_joint 1.299213e-05

Joint ci ratio: 6.722698e-01	ci left: 8.908127e-06	ci right 1.817418e-05	k: 33	n:2550000
Cons ci ratio: 2.294805e-03	ci left: 5.330349e-01	ci right 5.342599e-01	k: 1360801	n:2550000
KS ci ratio: 7.040484e-01	ci left: 7.937611e-06	ci right 1.679481e-05	k: 30	n:2550000
IFNA10   2550000 perm   2868 sec   (889 perm/sec)   p_kst 1.176471e-05   p_cons 5.336475e-01   p_joint 1.294118e-05

Joint ci ratio: 6.722699e-01	ci left: 8.873329e-06	ci right 1.810318e-05	k: 33	n:2560000
Cons ci ratio: 2.290315e-03	ci left: 5.330367e-01	ci right 5.342593e-01	k: 1366139	n:2560000
KS ci ratio: 7.040484e-01	ci left: 7.906605e-06	ci right 1.672920e-05	k: 30	n:2560000
IFNA10   2560000 perm   2888 sec   (886 perm/sec)   p_kst 1.171875e-05   p_cons 5.336480e-01   p_joint 1.289062e-05

Joint ci ratio: 6.722699e-01	ci left: 8.838803e-06	ci right 1.803274e-05	k: 33	n:2570000
Cons ci ratio: 2.285838e-03	ci left: 5.330416e-01	ci right 5.342618e-01	k: 1371485	n:2570000
KS ci ratio: 7.040484e-01	ci left: 7.875840e-06	ci right 1.666411e-05	k: 30	n:2570000
IFNA10   2570000 perm   2908 sec   (884 perm/sec)   p_kst 1.167315e-05   p_cons 5.336518e-01   p_joint 1.284047e-05

Joint ci ratio: 6.722699e-01	ci left: 8.804544e-06	ci right 1.796285e-05	k: 33	n:2580000
Cons ci ratio: 2.281527e-03	ci left: 5.330158e-01	ci right 5.342337e-01	k: 1376752	n:2580000
KS ci ratio: 7.040484e-01	ci left: 7.845313e-06	ci right 1.659952e-05	k: 30	n:2580000
IFNA10   2580000 perm   2929 sec   (881 perm/sec)   p_kst 1.162791e-05   p_cons 5.336248e-01   p_joint 1.279070e-05

Joint ci ratio: 6.722699e-01	ci left: 8.770549e-06	ci right 1.789349e-05	k: 33	n:2590000
Cons ci ratio: 2.277033e-03	ci left: 5.330358e-01	ci right 5.342513e-01	k: 1382137	n:2590000
KS ci ratio: 7.040484e-01	ci left: 7.815022e-06	ci right 1.653543e-05	k: 30	n:2590000
IFNA10   2590000 perm   2949 sec   (878 perm/sec)   p_kst 1.158301e-05   p_cons 5.336436e-01   p_joint 1.274131e-05

Joint ci ratio: 6.722699e-01	ci left: 8.736816e-06	ci right 1.782467e-05	k: 33	n:2600000
Cons ci ratio: 2.272706e-03	ci left: 5.330245e-01	ci right 5.342377e-01	k: 1387441	n:2600000
KS ci ratio: 7.040485e-01	ci left: 7.784965e-06	ci right 1.647183e-05	k: 30	n:2600000
IFNA10   2600000 perm   2971 sec   (875 perm/sec)   p_kst 1.153846e-05   p_cons 5.336312e-01   p_joint 1.269231e-05

Joint ci ratio: 6.722699e-01	ci left: 8.703342e-06	ci right 1.775638e-05	k: 33	n:2610000
Cons ci ratio: 2.268414e-03	ci left: 5.330114e-01	ci right 5.342222e-01	k: 1392740	n:2610000
KS ci ratio: 7.040485e-01	ci left: 7.755137e-06	ci right 1.640872e-05	k: 30	n:2610000
IFNA10   2610000 perm   2991 sec   (873 perm/sec)   p_kst 1.149425e-05   p_cons 5.336169e-01   p_joint 1.264368e-05

Joint ci ratio: 6.722700e-01	ci left: 8.670123e-06	ci right 1.768861e-05	k: 33	n:2620000
Cons ci ratio: 2.264197e-03	ci left: 5.329869e-01	ci right 5.341954e-01	k: 1398009	n:2620000
KS ci ratio: 7.040485e-01	ci left: 7.725537e-06	ci right 1.634609e-05	k: 30	n:2620000
IFNA10   2620000 perm   3012 sec   (870 perm/sec)   p_kst 1.145038e-05   p_cons 5.335912e-01   p_joint 1.259542e-05

Joint ci ratio: 6.722700e-01	ci left: 8.637157e-06	ci right 1.762135e-05	k: 33	n:2630000
Cons ci ratio: 2.260037e-03	ci left: 5.329554e-01	ci right 5.341616e-01	k: 1403259	n:2630000
KS ci ratio: 7.040485e-01	ci left: 7.696163e-06	ci right 1.628394e-05	k: 30	n:2630000
IFNA10   2630000 perm   3034 sec   (867 perm/sec)   p_kst 1.140684e-05   p_cons 5.335586e-01   p_joint 1.254753e-05

Joint ci ratio: 6.722700e-01	ci left: 8.604440e-06	ci right 1.755460e-05	k: 33	n:2640000
Cons ci ratio: 2.255745e-03	ci left: 5.329582e-01	ci right 5.341622e-01	k: 1408599	n:2640000
KS ci ratio: 7.040485e-01	ci left: 7.667010e-06	ci right 1.622226e-05	k: 30	n:2640000
IFNA10   2640000 perm   3055 sec   (864 perm/sec)   p_kst 1.136364e-05   p_cons 5.335602e-01   p_joint 1.250000e-05

Joint ci ratio: 6.722700e-01	ci left: 8.571970e-06	ci right 1.748836e-05	k: 33	n:2650000
Cons ci ratio: 2.251579e-03	ci left: 5.329384e-01	ci right 5.341400e-01	k: 1413879	n:2650000
KS ci ratio: 7.040485e-01	ci left: 7.638078e-06	ci right 1.616104e-05	k: 30	n:2650000
IFNA10   2650000 perm   3076 sec   (862 perm/sec)   p_kst 1.132075e-05   p_cons 5.335392e-01   p_joint 1.245283e-05

Joint ci ratio: 6.722700e-01	ci left: 8.539745e-06	ci right 1.742261e-05	k: 33	n:2660000
Cons ci ratio: 2.247313e-03	ci left: 5.329461e-01	ci right 5.341455e-01	k: 1419232	n:2660000
KS ci ratio: 7.040485e-01	ci left: 7.609364e-06	ci right 1.610029e-05	k: 30	n:2660000
IFNA10   2660000 perm   3097 sec   (859 perm/sec)   p_kst 1.127820e-05   p_cons 5.335459e-01   p_joint 1.240602e-05

Joint ci ratio: 6.722700e-01	ci left: 8.507761e-06	ci right 1.735736e-05	k: 33	n:2670000
Cons ci ratio: 2.243059e-03	ci left: 5.329564e-01	ci right 5.341536e-01	k: 1424592	n:2670000
KS ci ratio: 7.040486e-01	ci left: 7.580864e-06	ci right 1.603999e-05	k: 30	n:2670000
IFNA10   2670000 perm   3119 sec   (856 perm/sec)   p_kst 1.123596e-05   p_cons 5.335551e-01   p_joint 1.235955e-05

Joint ci ratio: 6.722701e-01	ci left: 8.476015e-06	ci right 1.729259e-05	k: 33	n:2680000
Cons ci ratio: 2.238872e-03	ci left: 5.329574e-01	ci right 5.341523e-01	k: 1429927	n:2680000
KS ci ratio: 7.040486e-01	ci left: 7.552577e-06	ci right 1.598014e-05	k: 30	n:2680000
IFNA10   2680000 perm   3140 sec   (854 perm/sec)   p_kst 1.119403e-05   p_cons 5.335549e-01   p_joint 1.231343e-05

Joint ci ratio: 6.722701e-01	ci left: 8.444506e-06	ci right 1.722831e-05	k: 33	n:2690000
Cons ci ratio: 2.234619e-03	ci left: 5.329780e-01	ci right 5.341707e-01	k: 1435315	n:2690000
KS ci ratio: 7.040486e-01	ci left: 7.524501e-06	ci right 1.592073e-05	k: 30	n:2690000
IFNA10   2690000 perm   3161 sec   (851 perm/sec)   p_kst 1.115242e-05   p_cons 5.335743e-01   p_joint 1.226766e-05

Joint ci ratio: 6.625965e-01	ci left: 8.720752e-06	ci right 1.759684e-05	k: 34	n:2700000
Cons ci ratio: 2.230524e-03	ci left: 5.329684e-01	ci right 5.341589e-01	k: 1440622	n:2700000
KS ci ratio: 7.040486e-01	ci left: 7.496632e-06	ci right 1.586176e-05	k: 30	n:2700000
IFNA10   2700000 perm   3183 sec   (848 perm/sec)   p_kst 1.111111e-05   p_cons 5.335637e-01   p_joint 1.259259e-05

Joint ci ratio: 6.625965e-01	ci left: 8.688572e-06	ci right 1.753191e-05	k: 34	n:2710000
Cons ci ratio: 2.226448e-03	ci left: 5.329601e-01	ci right 5.341483e-01	k: 1445932	n:2710000
KS ci ratio: 7.040486e-01	ci left: 7.468969e-06	ci right 1.580323e-05	k: 30	n:2710000
IFNA10   2710000 perm   3204 sec   (846 perm/sec)   p_kst 1.107011e-05   p_cons 5.335542e-01   p_joint 1.254613e-05

Joint ci ratio: 6.625966e-01	ci left: 8.656628e-06	ci right 1.746745e-05	k: 34	n:2720000
Cons ci ratio: 2.222298e-03	ci left: 5.329731e-01	ci right 5.341592e-01	k: 1451300	n:2720000
KS ci ratio: 7.040486e-01	ci left: 7.441510e-06	ci right 1.574513e-05	k: 30	n:2720000
IFNA10   2720000 perm   3226 sec   (843 perm/sec)   p_kst 1.102941e-05   p_cons 5.335662e-01   p_joint 1.250000e-05

Joint ci ratio: 6.625966e-01	ci left: 8.624919e-06	ci right 1.740347e-05	k: 34	n:2730000
Cons ci ratio: 2.218258e-03	ci left: 5.329666e-01	ci right 5.341505e-01	k: 1456615	n:2730000
KS ci ratio: 7.040487e-01	ci left: 7.414251e-06	ci right 1.568746e-05	k: 30	n:2730000
IFNA10   2730000 perm   3248 sec   (841 perm/sec)   p_kst 1.098901e-05   p_cons 5.335586e-01   p_joint 1.245421e-05

Joint ci ratio: 6.625966e-01	ci left: 8.593441e-06	ci right 1.733995e-05	k: 34	n:2740000
Cons ci ratio: 2.214316e-03	ci left: 5.329430e-01	ci right 5.341248e-01	k: 1461883	n:2740000
KS ci ratio: 7.040487e-01	ci left: 7.387192e-06	ci right 1.563021e-05	k: 30	n:2740000
IFNA10   2740000 perm   3270 sec   (838 perm/sec)   p_kst 1.094891e-05   p_cons 5.335339e-01   p_joint 1.240876e-05

Joint ci ratio: 6.625966e-01	ci left: 8.562192e-06	ci right 1.727690e-05	k: 34	n:2750000
Cons ci ratio: 2.210209e-03	ci left: 5.329614e-01	ci right 5.341410e-01	k: 1467266	n:2750000
KS ci ratio: 7.040487e-01	ci left: 7.360330e-06	ci right 1.557337e-05	k: 30	n:2750000
IFNA10   2750000 perm   3292 sec   (835 perm/sec)   p_kst 1.090909e-05   p_cons 5.335513e-01   p_joint 1.236364e-05

Joint ci ratio: 6.625966e-01	ci left: 8.531170e-06	ci right 1.721430e-05	k: 34	n:2760000
Cons ci ratio: 2.206249e-03	ci left: 5.329518e-01	ci right 5.341293e-01	k: 1472572	n:2760000
KS ci ratio: 7.040487e-01	ci left: 7.333662e-06	ci right 1.551694e-05	k: 30	n:2760000
IFNA10   2760000 perm   3314 sec   (833 perm/sec)   p_kst 1.086957e-05   p_cons 5.335406e-01   p_joint 1.231884e-05

Joint ci ratio: 6.625966e-01	ci left: 8.500371e-06	ci right 1.715216e-05	k: 34	n:2770000
Cons ci ratio: 2.202284e-03	ci left: 5.329480e-01	ci right 5.341234e-01	k: 1477894	n:2770000
KS ci ratio: 7.040487e-01	ci left: 7.307186e-06	ci right 1.546093e-05	k: 30	n:2770000
IFNA10   2770000 perm   3336 sec   (830 perm/sec)   p_kst 1.083032e-05   p_cons 5.335357e-01   p_joint 1.227437e-05

Joint ci ratio: 6.533290e-01	ci left: 8.769361e-06	ci right 1.750950e-05	k: 35	n:2780000
Cons ci ratio: 2.198305e-03	ci left: 5.329526e-01	ci right 5.341258e-01	k: 1483239	n:2780000
KS ci ratio: 6.929605e-01	ci left: 7.576629e-06	ci right 1.582803e-05	k: 31	n:2780000
IFNA10   2780000 perm   3358 sec   (828 perm/sec)   p_kst 1.115108e-05   p_cons 5.335392e-01   p_joint 1.258993e-05

Joint ci ratio: 6.444396e-01	ci left: 9.037277e-06	ci right 1.786346e-05	k: 36	n:2790000
Cons ci ratio: 2.194436e-03	ci left: 5.329366e-01	ci right 5.341077e-01	k: 1488527	n:2790000
KS ci ratio: 6.929605e-01	ci left: 7.549473e-06	ci right 1.577130e-05	k: 31	n:2790000
IFNA10   2790000 perm   3381 sec   (825 perm/sec)   p_kst 1.111111e-05   p_cons 5.335222e-01   p_joint 1.290323e-05

Joint ci ratio: 6.444397e-01	ci left: 9.005001e-06	ci right 1.779966e-05	k: 36	n:2800000
Cons ci ratio: 2.190459e-03	ci left: 5.329501e-01	ci right 5.341191e-01	k: 1493897	n:2800000
KS ci ratio: 6.929606e-01	ci left: 7.522511e-06	ci right 1.571497e-05	k: 31	n:2800000
IFNA10   2800000 perm   3403 sec   (823 perm/sec)   p_kst 1.107143e-05   p_cons 5.335346e-01   p_joint 1.285714e-05

Joint ci ratio: 6.444397e-01	ci left: 8.972954e-06	ci right 1.773632e-05	k: 36	n:2810000
Cons ci ratio: 2.186573e-03	ci left: 5.329478e-01	ci right 5.341148e-01	k: 1499223	n:2810000
KS ci ratio: 6.929606e-01	ci left: 7.495740e-06	ci right 1.565905e-05	k: 31	n:2810000
IFNA10   2810000 perm   3425 sec   (821 perm/sec)   p_kst 1.103203e-05   p_cons 5.335313e-01   p_joint 1.281139e-05

Joint ci ratio: 6.444397e-01	ci left: 8.941135e-06	ci right 1.767342e-05	k: 36	n:2820000
Cons ci ratio: 2.182774e-03	ci left: 5.329303e-01	ci right 5.340952e-01	k: 1504506	n:2820000
KS ci ratio: 6.929606e-01	ci left: 7.469159e-06	ci right 1.560352e-05	k: 31	n:2820000
IFNA10   2820000 perm   3447 sec   (818 perm/sec)   p_kst 1.099291e-05   p_cons 5.335128e-01   p_joint 1.276596e-05

Joint ci ratio: 6.444397e-01	ci left: 8.909541e-06	ci right 1.761097e-05	k: 36	n:2830000
Cons ci ratio: 2.178928e-03	ci left: 5.329281e-01	ci right 5.340909e-01	k: 1509832	n:2830000
KS ci ratio: 6.929606e-01	ci left: 7.442767e-06	ci right 1.554838e-05	k: 31	n:2830000
IFNA10   2830000 perm   3469 sec   (816 perm/sec)   p_kst 1.095406e-05   p_cons 5.335095e-01   p_joint 1.272085e-05

Joint ci ratio: 6.359036e-01	ci left: 9.173049e-06	ci right 1.795757e-05	k: 37	n:2840000
Cons ci ratio: 2.175137e-03	ci left: 5.329182e-01	ci right 5.340789e-01	k: 1515136	n:2840000
KS ci ratio: 6.823803e-01	ci left: 7.707046e-06	ci right 1.590646e-05	k: 32	n:2840000
IFNA10   2840000 perm   3492 sec   (813 perm/sec)   p_kst 1.126761e-05   p_cons 5.334986e-01   p_joint 1.302817e-05

Joint ci ratio: 6.359036e-01	ci left: 9.140863e-06	ci right 1.789456e-05	k: 37	n:2850000
Cons ci ratio: 2.171261e-03	ci left: 5.329322e-01	ci right 5.340909e-01	k: 1520508	n:2850000
KS ci ratio: 6.823803e-01	ci left: 7.680004e-06	ci right 1.585065e-05	k: 32	n:2850000
IFNA10   2850000 perm   3514 sec   (811 perm/sec)   p_kst 1.122807e-05   p_cons 5.335116e-01   p_joint 1.298246e-05

Joint ci ratio: 6.359036e-01	ci left: 9.108902e-06	ci right 1.783199e-05	k: 37	n:2860000
Cons ci ratio: 2.167463e-03	ci left: 5.329328e-01	ci right 5.340895e-01	k: 1525842	n:2860000
KS ci ratio: 6.823804e-01	ci left: 7.653151e-06	ci right 1.579523e-05	k: 32	n:2860000
IFNA10   2860000 perm   3537 sec   (809 perm/sec)   p_kst 1.118881e-05   p_cons 5.335112e-01   p_joint 1.293706e-05

Joint ci ratio: 6.359037e-01	ci left: 9.077164e-06	ci right 1.776986e-05	k: 37	n:2870000
Cons ci ratio: 2.163744e-03	ci left: 5.329198e-01	ci right 5.340745e-01	k: 1531137	n:2870000
KS ci ratio: 6.823804e-01	ci left: 7.626485e-06	ci right 1.574019e-05	k: 32	n:2870000
IFNA10   2870000 perm   3560 sec   (806 perm/sec)   p_kst 1.114983e-05   p_cons 5.334972e-01   p_joint 1.289199e-05

Joint ci ratio: 6.198020e-01	ci left: 9.629466e-06	ci right 1.851186e-05	k: 39	n:2880000
Cons ci ratio: 2.159939e-03	ci left: 5.329313e-01	ci right 5.340839e-01	k: 1536502	n:2880000
KS ci ratio: 6.625968e-01	ci left: 8.175704e-06	ci right 1.649704e-05	k: 34	n:2880000
IFNA10   2880000 perm   3583 sec   (804 perm/sec)   p_kst 1.180556e-05   p_cons 5.335076e-01   p_joint 1.354167e-05

Joint ci ratio: 6.198020e-01	ci left: 9.596146e-06	ci right 1.844780e-05	k: 39	n:2890000
Cons ci ratio: 2.156169e-03	ci left: 5.329392e-01	ci right 5.340898e-01	k: 1541857	n:2890000
KS ci ratio: 6.625968e-01	ci left: 8.147414e-06	ci right 1.643996e-05	k: 34	n:2890000
IFNA10   2890000 perm   3606 sec   (802 perm/sec)   p_kst 1.176471e-05   p_cons 5.335145e-01   p_joint 1.349481e-05

Joint ci ratio: 6.198020e-01	ci left: 9.563056e-06	ci right 1.838419e-05	k: 39	n:2900000
Cons ci ratio: 2.152339e-03	ci left: 5.329656e-01	ci right 5.341143e-01	k: 1547266	n:2900000
KS ci ratio: 6.625968e-01	ci left: 8.119320e-06	ci right 1.638327e-05	k: 34	n:2900000
IFNA10   2900000 perm   3630 sec   (799 perm/sec)   p_kst 1.172414e-05   p_cons 5.335400e-01   p_joint 1.344828e-05

Joint ci ratio: 6.198021e-01	ci left: 9.530193e-06	ci right 1.832101e-05	k: 39	n:2910000
Cons ci ratio: 2.148690e-03	ci left: 5.329544e-01	ci right 5.341012e-01	k: 1552566	n:2910000
KS ci ratio: 6.625968e-01	ci left: 8.091418e-06	ci right 1.632697e-05	k: 34	n:2910000
IFNA10   2910000 perm   3652 sec   (797 perm/sec)   p_kst 1.168385e-05   p_cons 5.335278e-01   p_joint 1.340206e-05

Joint ci ratio: 6.198021e-01	ci left: 9.497555e-06	ci right 1.825827e-05	k: 39	n:2920000
Cons ci ratio: 2.144926e-03	ci left: 5.329742e-01	ci right 5.341189e-01	k: 1557956	n:2920000
KS ci ratio: 6.625969e-01	ci left: 8.063708e-06	ci right 1.627106e-05	k: 34	n:2920000
IFNA10   2920000 perm   3676 sec   (794 perm/sec)   p_kst 1.164384e-05   p_cons 5.335466e-01   p_joint 1.335616e-05

Joint ci ratio: 6.198021e-01	ci left: 9.465140e-06	ci right 1.819596e-05	k: 39	n:2930000
Cons ci ratio: 2.141362e-03	ci left: 5.329521e-01	ci right 5.340949e-01	k: 1563224	n:2930000
KS ci ratio: 6.625969e-01	ci left: 8.036186e-06	ci right 1.621552e-05	k: 34	n:2930000
IFNA10   2930000 perm   3699 sec   (792 perm/sec)   p_kst 1.160410e-05   p_cons 5.335235e-01   p_joint 1.331058e-05

Joint ci ratio: 6.198021e-01	ci left: 9.432946e-06	ci right 1.813407e-05	k: 39	n:2940000
Cons ci ratio: 2.137626e-03	ci left: 5.329744e-01	ci right 5.341153e-01	k: 1568622	n:2940000
KS ci ratio: 6.625969e-01	ci left: 8.008852e-06	ci right 1.616037e-05	k: 34	n:2940000
IFNA10   2940000 perm   3722 sec   (790 perm/sec)   p_kst 1.156463e-05   p_cons 5.335449e-01   p_joint 1.326531e-05

Joint ci ratio: 6.121968e-01	ci left: 9.686996e-06	ci right 1.846390e-05	k: 40	n:2950000
Cons ci ratio: 2.133875e-03	ci left: 5.330044e-01	ci right 5.341433e-01	k: 1574043	n:2950000
KS ci ratio: 6.533292e-01	ci left: 8.264008e-06	ci right 1.650048e-05	k: 35	n:2950000
IFNA10   2950000 perm   3745 sec   (788 perm/sec)   p_kst 1.186441e-05   p_cons 5.335739e-01   p_joint 1.355932e-05

Joint ci ratio: 6.121968e-01	ci left: 9.654269e-06	ci right 1.840152e-05	k: 40	n:2960000
Cons ci ratio: 2.130324e-03	ci left: 5.329923e-01	ci right 5.341293e-01	k: 1579340	n:2960000
KS ci ratio: 6.533292e-01	ci left: 8.236089e-06	ci right 1.644473e-05	k: 35	n:2960000
IFNA10   2960000 perm   3768 sec   (785 perm/sec)   p_kst 1.182432e-05   p_cons 5.335608e-01   p_joint 1.351351e-05

Joint ci ratio: 6.121968e-01	ci left: 9.621763e-06	ci right 1.833957e-05	k: 40	n:2970000
Cons ci ratio: 2.126801e-03	ci left: 5.329776e-01	ci right 5.341126e-01	k: 1584629	n:2970000
KS ci ratio: 6.533293e-01	ci left: 8.208358e-06	ci right 1.638937e-05	k: 35	n:2970000
IFNA10   2970000 perm   3792 sec   (783 perm/sec)   p_kst 1.178451e-05   p_cons 5.335451e-01   p_joint 1.346801e-05

Joint ci ratio: 6.121968e-01	ci left: 9.589475e-06	ci right 1.827803e-05	k: 40	n:2980000
Cons ci ratio: 2.123225e-03	ci left: 5.329797e-01	ci right 5.341129e-01	k: 1589968	n:2980000
KS ci ratio: 6.533293e-01	ci left: 8.180813e-06	ci right 1.633437e-05	k: 35	n:2980000
IFNA10   2980000 perm   3815 sec   (781 perm/sec)   p_kst 1.174497e-05   p_cons 5.335463e-01   p_joint 1.342282e-05

Joint ci ratio: 6.121968e-01	ci left: 9.557403e-06	ci right 1.821689e-05	k: 40	n:2990000
Cons ci ratio: 2.119730e-03	ci left: 5.329668e-01	ci right 5.340980e-01	k: 1595262	n:2990000
KS ci ratio: 6.533293e-01	ci left: 8.153452e-06	ci right 1.627974e-05	k: 35	n:2990000
IFNA10   2990000 perm   3839 sec   (779 perm/sec)   p_kst 1.170569e-05   p_cons 5.335324e-01   p_joint 1.337793e-05

Joint ci ratio: 6.121969e-01	ci left: 9.525545e-06	ci right 1.815617e-05	k: 40	n:3000000
Cons ci ratio: 2.116124e-03	ci left: 5.329843e-01	ci right 5.341137e-01	k: 1600647	n:3000000
KS ci ratio: 6.533293e-01	ci left: 8.126274e-06	ci right 1.622547e-05	k: 35	n:3000000
IFNA10   3000000 perm   3862 sec   (777 perm/sec)   p_kst 1.166667e-05   p_cons 5.335490e-01   p_joint 1.333333e-05

Joint ci ratio: 6.121969e-01	ci left: 9.493899e-06	ci right 1.809585e-05	k: 40	n:3010000
Cons ci ratio: 2.112451e-03	ci left: 5.330216e-01	ci right 5.341491e-01	k: 1606092	n:3010000
KS ci ratio: 6.533293e-01	ci left: 8.099276e-06	ci right 1.617157e-05	k: 35	n:3010000
IFNA10   3010000 perm   3886 sec   (775 perm/sec)   p_kst 1.162791e-05   p_cons 5.335854e-01   p_joint 1.328904e-05

Joint ci ratio: 6.121969e-01	ci left: 9.462462e-06	ci right 1.803593e-05	k: 40	n:3020000
Cons ci ratio: 2.108931e-03	ci left: 5.330272e-01	ci right 5.341528e-01	k: 1611442	n:3020000
KS ci ratio: 6.533293e-01	ci left: 8.072457e-06	ci right 1.611802e-05	k: 35	n:3020000
IFNA10   3020000 perm   3910 sec   (772 perm/sec)   p_kst 1.158940e-05   p_cons 5.335901e-01   p_joint 1.324503e-05

Joint ci ratio: 6.121969e-01	ci left: 9.431233e-06	ci right 1.797641e-05	k: 40	n:3030000
Cons ci ratio: 2.105493e-03	ci left: 5.330176e-01	ci right 5.341414e-01	k: 1616746	n:3030000
KS ci ratio: 6.533293e-01	ci left: 8.045816e-06	ci right 1.606482e-05	k: 35	n:3030000
IFNA10   3030000 perm   3934 sec   (770 perm/sec)   p_kst 1.155116e-05   p_cons 5.335795e-01   p_joint 1.320132e-05

Joint ci ratio: 6.121969e-01	ci left: 9.400209e-06	ci right 1.791728e-05	k: 40	n:3040000
Cons ci ratio: 2.102150e-03	ci left: 5.329893e-01	ci right 5.341113e-01	k: 1621993	n:3040000
KS ci ratio: 6.533294e-01	ci left: 8.019349e-06	ci right 1.601198e-05	k: 35	n:3040000
IFNA10   3040000 perm   3958 sec   (768 perm/sec)   p_kst 1.151316e-05   p_cons 5.335503e-01   p_joint 1.315789e-05

Joint ci ratio: 6.121969e-01	ci left: 9.369389e-06	ci right 1.785853e-05	k: 40	n:3050000
Cons ci ratio: 2.098727e-03	ci left: 5.329842e-01	ci right 5.341043e-01	k: 1627310	n:3050000
KS ci ratio: 6.533294e-01	ci left: 7.993056e-06	ci right 1.595948e-05	k: 35	n:3050000
IFNA10   3050000 perm   3982 sec   (766 perm/sec)   p_kst 1.147541e-05   p_cons 5.335443e-01   p_joint 1.311475e-05

Joint ci ratio: 6.121969e-01	ci left: 9.338770e-06	ci right 1.780017e-05	k: 40	n:3060000
Cons ci ratio: 2.095217e-03	ci left: 5.330036e-01	ci right 5.341218e-01	k: 1632702	n:3060000
KS ci ratio: 6.533294e-01	ci left: 7.966935e-06	ci right 1.590733e-05	k: 35	n:3060000
IFNA10   3060000 perm   4006 sec   (764 perm/sec)   p_kst 1.143791e-05   p_cons 5.335627e-01   p_joint 1.307190e-05

Joint ci ratio: 6.121970e-01	ci left: 9.308350e-06	ci right 1.774219e-05	k: 40	n:3070000
Cons ci ratio: 2.091875e-03	ci left: 5.329870e-01	ci right 5.341035e-01	k: 1637984	n:3070000
KS ci ratio: 6.533294e-01	ci left: 7.940984e-06	ci right 1.585551e-05	k: 35	n:3070000
IFNA10   3070000 perm   4031 sec   (762 perm/sec)   p_kst 1.140065e-05   p_cons 5.335453e-01   p_joint 1.302932e-05

Joint ci ratio: 6.048649e-01	ci left: 9.552714e-06	ci right 1.805877e-05	k: 41	n:3080000
Cons ci ratio: 2.088524e-03	ci left: 5.329768e-01	ci right 5.340914e-01	k: 1643285	n:3080000
KS ci ratio: 6.444401e-01	ci left: 8.186363e-06	ci right 1.618151e-05	k: 36	n:3080000
IFNA10   3080000 perm   4055 sec   (759 perm/sec)   p_kst 1.168831e-05   p_cons 5.335341e-01   p_joint 1.331169e-05

Joint ci ratio: 5.977901e-01	ci left: 9.796103e-06	ci right 1.837271e-05	k: 42	n:3090000
Cons ci ratio: 2.085103e-03	ci left: 5.329869e-01	ci right 5.340997e-01	k: 1648649	n:3090000
KS ci ratio: 6.359040e-01	ci left: 8.430892e-06	ci right 1.650470e-05	k: 37	n:3090000
IFNA10   3090000 perm   4080 sec   (757 perm/sec)   p_kst 1.197411e-05   p_cons 5.335434e-01   p_joint 1.359223e-05

Joint ci ratio: 5.977902e-01	ci left: 9.764503e-06	ci right 1.831344e-05	k: 42	n:3100000
Cons ci ratio: 2.081799e-03	ci left: 5.329729e-01	ci right 5.340839e-01	k: 1653938	n:3100000
KS ci ratio: 6.359040e-01	ci left: 8.403696e-06	ci right 1.645146e-05	k: 37	n:3100000
IFNA10   3100000 perm   4105 sec   (755 perm/sec)   p_kst 1.193548e-05   p_cons 5.335284e-01   p_joint 1.354839e-05

Joint ci ratio: 5.977902e-01	ci left: 9.733105e-06	ci right 1.825455e-05	k: 42	n:3110000
Cons ci ratio: 2.078447e-03	ci left: 5.329743e-01	ci right 5.340835e-01	k: 1659275	n:3110000
KS ci ratio: 6.359040e-01	ci left: 8.376674e-06	ci right 1.639856e-05	k: 37	n:3110000
IFNA10   3110000 perm   4129 sec   (753 perm/sec)   p_kst 1.189711e-05   p_cons 5.335289e-01   p_joint 1.350482e-05

Joint ci ratio: 5.977902e-01	ci left: 9.701910e-06	ci right 1.819605e-05	k: 42	n:3120000
Cons ci ratio: 2.075029e-03	ci left: 5.329956e-01	ci right 5.341030e-01	k: 1664674	n:3120000
KS ci ratio: 6.359040e-01	ci left: 8.349826e-06	ci right 1.634600e-05	k: 37	n:3120000
IFNA10   3120000 perm   4154 sec   (751 perm/sec)   p_kst 1.185897e-05   p_cons 5.335494e-01   p_joint 1.346154e-05

Joint ci ratio: 5.977902e-01	ci left: 9.670913e-06	ci right 1.813791e-05	k: 42	n:3130000
Cons ci ratio: 2.071669e-03	ci left: 5.330066e-01	ci right 5.341122e-01	k: 1670041	n:3130000
KS ci ratio: 6.359040e-01	ci left: 8.323149e-06	ci right 1.629377e-05	k: 37	n:3130000
IFNA10   3130000 perm   4179 sec   (749 perm/sec)   p_kst 1.182109e-05   p_cons 5.335594e-01   p_joint 1.341853e-05

Joint ci ratio: 5.977902e-01	ci left: 9.640114e-06	ci right 1.808015e-05	k: 42	n:3140000
Cons ci ratio: 2.068296e-03	ci left: 5.330248e-01	ci right 5.341287e-01	k: 1675431	n:3140000
KS ci ratio: 6.359040e-01	ci left: 8.296642e-06	ci right 1.624188e-05	k: 37	n:3140000
IFNA10   3140000 perm   4204 sec   (747 perm/sec)   p_kst 1.178344e-05   p_cons 5.335768e-01   p_joint 1.337580e-05

Joint ci ratio: 5.977902e-01	ci left: 9.609510e-06	ci right 1.802275e-05	k: 42	n:3150000
Cons ci ratio: 2.064967e-03	ci left: 5.330362e-01	ci right 5.341383e-01	k: 1680800	n:3150000
KS ci ratio: 6.359040e-01	ci left: 8.270303e-06	ci right 1.619032e-05	k: 37	n:3150000
IFNA10   3150000 perm   4229 sec   (745 perm/sec)   p_kst 1.174603e-05   p_cons 5.335873e-01   p_joint 1.333333e-05

Joint ci ratio: 5.977902e-01	ci left: 9.579100e-06	ci right 1.796572e-05	k: 42	n:3160000
Cons ci ratio: 2.061753e-03	ci left: 5.330235e-01	ci right 5.341239e-01	k: 1686093	n:3160000
KS ci ratio: 6.359040e-01	ci left: 8.244132e-06	ci right 1.613909e-05	k: 37	n:3160000
IFNA10   3160000 perm   4254 sec   (743 perm/sec)   p_kst 1.170886e-05   p_cons 5.335737e-01   p_joint 1.329114e-05

Joint ci ratio: 5.977902e-01	ci left: 9.548882e-06	ci right 1.790904e-05	k: 42	n:3170000
Cons ci ratio: 2.058463e-03	ci left: 5.330330e-01	ci right 5.341316e-01	k: 1691456	n:3170000
KS ci ratio: 6.359041e-01	ci left: 8.218125e-06	ci right 1.608817e-05	k: 37	n:3170000
IFNA10   3170000 perm   4279 sec   (741 perm/sec)   p_kst 1.167192e-05   p_cons 5.335823e-01   p_joint 1.324921e-05

Joint ci ratio: 5.977903e-01	ci left: 9.518854e-06	ci right 1.785273e-05	k: 42	n:3180000
Cons ci ratio: 2.055269e-03	ci left: 5.330229e-01	ci right 5.341198e-01	k: 1696757	n:3180000
KS ci ratio: 6.359041e-01	ci left: 8.192282e-06	ci right 1.603758e-05	k: 37	n:3180000
IFNA10   3180000 perm   4305 sec   (739 perm/sec)   p_kst 1.163522e-05   p_cons 5.335714e-01   p_joint 1.320755e-05

Joint ci ratio: 5.977903e-01	ci left: 9.489015e-06	ci right 1.779676e-05	k: 42	n:3190000
Cons ci ratio: 2.051952e-03	ci left: 5.330464e-01	ci right 5.341416e-01	k: 1702165	n:3190000
KS ci ratio: 6.359041e-01	ci left: 8.166600e-06	ci right 1.598731e-05	k: 37	n:3190000
IFNA10   3190000 perm   4330 sec   (737 perm/sec)   p_kst 1.159875e-05   p_cons 5.335940e-01   p_joint 1.316614e-05

Joint ci ratio: 5.977903e-01	ci left: 9.459361e-06	ci right 1.774115e-05	k: 42	n:3200000
Cons ci ratio: 2.048877e-03	ci left: 5.330148e-01	ci right 5.341083e-01	k: 1707397	n:3200000
KS ci ratio: 6.359041e-01	ci left: 8.141080e-06	ci right 1.593735e-05	k: 37	n:3200000
IFNA10   3200000 perm   4355 sec   (735 perm/sec)   p_kst 1.156250e-05   p_cons 5.335616e-01   p_joint 1.312500e-05

Joint ci ratio: 5.977903e-01	ci left: 9.429893e-06	ci right 1.768588e-05	k: 42	n:3210000
Cons ci ratio: 2.045649e-03	ci left: 5.330239e-01	ci right 5.341156e-01	k: 1712759	n:3210000
KS ci ratio: 6.359041e-01	ci left: 8.115718e-06	ci right 1.588770e-05	k: 37	n:3210000
IFNA10   3210000 perm   4380 sec   (733 perm/sec)   p_kst 1.152648e-05   p_cons 5.335698e-01   p_joint 1.308411e-05

Joint ci ratio: 5.977903e-01	ci left: 9.400608e-06	ci right 1.763095e-05	k: 42	n:3220000
Cons ci ratio: 2.042411e-03	ci left: 5.330391e-01	ci right 5.341292e-01	k: 1718141	n:3220000
KS ci ratio: 6.359041e-01	ci left: 8.090514e-06	ci right 1.583836e-05	k: 37	n:3220000
IFNA10   3220000 perm   4405 sec   (731 perm/sec)   p_kst 1.149068e-05   p_cons 5.335842e-01   p_joint 1.304348e-05

Joint ci ratio: 5.977903e-01	ci left: 9.371503e-06	ci right 1.757637e-05	k: 42	n:3230000
Cons ci ratio: 2.039252e-03	ci left: 5.330387e-01	ci right 5.341271e-01	k: 1723473	n:3230000
KS ci ratio: 6.359041e-01	ci left: 8.065466e-06	ci right 1.578932e-05	k: 37	n:3230000
IFNA10   3230000 perm   4431 sec   (729 perm/sec)   p_kst 1.145511e-05   p_cons 5.335830e-01   p_joint 1.300310e-05

Joint ci ratio: 5.977903e-01	ci left: 9.342579e-06	ci right 1.752212e-05	k: 42	n:3240000
Cons ci ratio: 2.036144e-03	ci left: 5.330294e-01	ci right 5.341162e-01	k: 1728776	n:3240000
KS ci ratio: 6.359041e-01	ci left: 8.040572e-06	ci right 1.574059e-05	k: 37	n:3240000
IFNA10   3240000 perm   4456 sec   (727 perm/sec)   p_kst 1.141975e-05   p_cons 5.335728e-01   p_joint 1.296296e-05

Joint ci ratio: 5.977903e-01	ci left: 9.313833e-06	ci right 1.746821e-05	k: 42	n:3250000
Cons ci ratio: 2.033105e-03	ci left: 5.330067e-01	ci right 5.340917e-01	k: 1734035	n:3250000
KS ci ratio: 6.359042e-01	ci left: 8.015832e-06	ci right 1.569216e-05	k: 37	n:3250000
IFNA10   3250000 perm   4482 sec   (725 perm/sec)   p_kst 1.138462e-05   p_cons 5.335492e-01   p_joint 1.292308e-05

Joint ci ratio: 5.977904e-01	ci left: 9.285262e-06	ci right 1.741462e-05	k: 42	n:3260000
Cons ci ratio: 2.029880e-03	ci left: 5.330331e-01	ci right 5.341165e-01	k: 1739454	n:3260000
KS ci ratio: 6.359042e-01	ci left: 7.991244e-06	ci right 1.564402e-05	k: 37	n:3260000
IFNA10   3260000 perm   4508 sec   (723 perm/sec)   p_kst 1.134969e-05   p_cons 5.335748e-01   p_joint 1.288344e-05

Joint ci ratio: 5.977904e-01	ci left: 9.256867e-06	ci right 1.736137e-05	k: 42	n:3270000
Cons ci ratio: 2.026812e-03	ci left: 5.330246e-01	ci right 5.341063e-01	k: 1744759	n:3270000
KS ci ratio: 6.359042e-01	ci left: 7.966806e-06	ci right 1.559618e-05	k: 37	n:3270000
IFNA10   3270000 perm   4534 sec   (721 perm/sec)   p_kst 1.131498e-05   p_cons 5.335654e-01   p_joint 1.284404e-05

Joint ci ratio: 5.977904e-01	ci left: 9.228645e-06	ci right 1.730844e-05	k: 42	n:3280000
Cons ci ratio: 2.023748e-03	ci left: 5.330185e-01	ci right 5.340985e-01	k: 1750072	n:3280000
KS ci ratio: 6.359042e-01	ci left: 7.942516e-06	ci right 1.554863e-05	k: 37	n:3280000
IFNA10   3280000 perm   4559 sec   (719 perm/sec)   p_kst 1.128049e-05   p_cons 5.335585e-01   p_joint 1.280488e-05

Joint ci ratio: 5.977904e-01	ci left: 9.200594e-06	ci right 1.725583e-05	k: 42	n:3290000
Cons ci ratio: 2.020612e-03	ci left: 5.330337e-01	ci right 5.341121e-01	k: 1755455	n:3290000
KS ci ratio: 6.359042e-01	ci left: 7.918375e-06	ci right 1.550137e-05	k: 37	n:3290000
IFNA10   3290000 perm   4585 sec   (717 perm/sec)   p_kst 1.124620e-05   p_cons 5.335729e-01   p_joint 1.276596e-05

Joint ci ratio: 5.977904e-01	ci left: 9.172714e-06	ci right 1.720354e-05	k: 42	n:3300000
Cons ci ratio: 2.017582e-03	ci left: 5.330261e-01	ci right 5.341029e-01	k: 1760763	n:3300000
KS ci ratio: 6.359042e-01	ci left: 7.894380e-06	ci right 1.545440e-05	k: 37	n:3300000
IFNA10   3300000 perm   4611 sec   (716 perm/sec)   p_kst 1.121212e-05   p_cons 5.335645e-01   p_joint 1.272727e-05

Joint ci ratio: 5.977904e-01	ci left: 9.145001e-06	ci right 1.715156e-05	k: 42	n:3310000
Cons ci ratio: 2.014474e-03	ci left: 5.330412e-01	ci right 5.341164e-01	k: 1766146	n:3310000
KS ci ratio: 6.359042e-01	ci left: 7.870530e-06	ci right 1.540771e-05	k: 37	n:3310000
IFNA10   3310000 perm   4639 sec   (714 perm/sec)   p_kst 1.117825e-05   p_cons 5.335789e-01   p_joint 1.268882e-05

Joint ci ratio: 5.977904e-01	ci left: 9.117456e-06	ci right 1.709990e-05	k: 42	n:3320000
Cons ci ratio: 2.011461e-03	ci left: 5.330364e-01	ci right 5.341099e-01	k: 1771463	n:3320000
KS ci ratio: 6.359042e-01	ci left: 7.846823e-06	ci right 1.536130e-05	k: 37	n:3320000
IFNA10   3320000 perm   4665 sec   (712 perm/sec)   p_kst 1.114458e-05   p_cons 5.335732e-01   p_joint 1.265060e-05

Joint ci ratio: 5.977904e-01	ci left: 9.090076e-06	ci right 1.704855e-05	k: 42	n:3330000
Cons ci ratio: 2.008465e-03	ci left: 5.330307e-01	ci right 5.341026e-01	k: 1776777	n:3330000
KS ci ratio: 6.359042e-01	ci left: 7.823259e-06	ci right 1.531517e-05	k: 37	n:3330000
IFNA10   3330000 perm   4691 sec   (710 perm/sec)   p_kst 1.111111e-05   p_cons 5.335667e-01   p_joint 1.261261e-05

Joint ci ratio: 5.977905e-01	ci left: 9.062861e-06	ci right 1.699751e-05	k: 42	n:3340000
Cons ci ratio: 2.005454e-03	ci left: 5.330319e-01	ci right 5.341022e-01	k: 1782114	n:3340000
KS ci ratio: 6.359043e-01	ci left: 7.799836e-06	ci right 1.526932e-05	k: 37	n:3340000
IFNA10   3340000 perm   4718 sec   (708 perm/sec)   p_kst 1.107784e-05   p_cons 5.335671e-01   p_joint 1.257485e-05

Joint ci ratio: 5.977905e-01	ci left: 9.035807e-06	ci right 1.694677e-05	k: 42	n:3350000
Cons ci ratio: 2.002625e-03	ci left: 5.329913e-01	ci right 5.340600e-01	k: 1787311	n:3350000
KS ci ratio: 6.359043e-01	ci left: 7.776553e-06	ci right 1.522374e-05	k: 37	n:3350000
IFNA10   3350000 perm   4745 sec   (706 perm/sec)   p_kst 1.104478e-05   p_cons 5.335257e-01   p_joint 1.253731e-05

Joint ci ratio: 5.977905e-01	ci left: 9.008915e-06	ci right 1.689633e-05	k: 42	n:3360000
Cons ci ratio: 1.999582e-03	ci left: 5.330072e-01	ci right 5.340743e-01	k: 1792697	n:3360000
KS ci ratio: 6.359043e-01	ci left: 7.753409e-06	ci right 1.517843e-05	k: 37	n:3360000
IFNA10   3360000 perm   4772 sec   (704 perm/sec)   p_kst 1.101190e-05   p_cons 5.335408e-01   p_joint 1.250000e-05

Joint ci ratio: 5.977905e-01	ci left: 8.982182e-06	ci right 1.684619e-05	k: 42	n:3370000
Cons ci ratio: 1.996615e-03	ci left: 5.330076e-01	ci right 5.340731e-01	k: 1798031	n:3370000
KS ci ratio: 6.359043e-01	ci left: 7.730401e-06	ci right 1.513339e-05	k: 37	n:3370000
IFNA10   3370000 perm   4799 sec   (702 perm/sec)   p_kst 1.097923e-05   p_cons 5.335404e-01   p_joint 1.246291e-05

Joint ci ratio: 5.977905e-01	ci left: 8.955608e-06	ci right 1.679635e-05	k: 42	n:3380000
Cons ci ratio: 1.993630e-03	ci left: 5.330156e-01	ci right 5.340796e-01	k: 1803391	n:3380000
KS ci ratio: 6.359043e-01	ci left: 7.707530e-06	ci right 1.508862e-05	k: 37	n:3380000
IFNA10   3380000 perm   4826 sec   (700 perm/sec)   p_kst 1.094675e-05   p_cons 5.335476e-01   p_joint 1.242604e-05

Joint ci ratio: 5.977905e-01	ci left: 8.929190e-06	ci right 1.674681e-05	k: 42	n:3390000
Cons ci ratio: 1.990674e-03	ci left: 5.330198e-01	ci right 5.340822e-01	k: 1808738	n:3390000
KS ci ratio: 6.359043e-01	ci left: 7.684794e-06	ci right 1.504411e-05	k: 37	n:3390000
IFNA10   3390000 perm   4853 sec   (699 perm/sec)   p_kst 1.091445e-05   p_cons 5.335510e-01   p_joint 1.238938e-05

Joint ci ratio: 5.977905e-01	ci left: 8.902927e-06	ci right 1.669755e-05	k: 42	n:3400000
Cons ci ratio: 1.987667e-03	ci left: 5.330398e-01	ci right 5.341007e-01	k: 1814139	n:3400000
KS ci ratio: 6.359043e-01	ci left: 7.662192e-06	ci right 1.499986e-05	k: 37	n:3400000
IFNA10   3400000 perm   4881 sec   (697 perm/sec)   p_kst 1.088235e-05   p_cons 5.335703e-01   p_joint 1.235294e-05

Joint ci ratio: 5.977905e-01	ci left: 8.876819e-06	ci right 1.664859e-05	k: 42	n:3410000
Cons ci ratio: 1.984759e-03	ci left: 5.330387e-01	ci right 5.340979e-01	k: 1819468	n:3410000
KS ci ratio: 6.359043e-01	ci left: 7.639722e-06	ci right 1.495587e-05	k: 37	n:3410000
IFNA10   3410000 perm   4908 sec   (695 perm/sec)   p_kst 1.085044e-05   p_cons 5.335683e-01   p_joint 1.231672e-05

Joint ci ratio: 5.977906e-01	ci left: 8.850864e-06	ci right 1.659991e-05	k: 42	n:3420000
Cons ci ratio: 1.981889e-03	ci left: 5.330308e-01	ci right 5.340885e-01	k: 1824774	n:3420000
KS ci ratio: 6.359043e-01	ci left: 7.617384e-06	ci right 1.491214e-05	k: 37	n:3420000
IFNA10   3420000 perm   4936 sec   (693 perm/sec)   p_kst 1.081871e-05   p_cons 5.335596e-01   p_joint 1.228070e-05

Joint ci ratio: 5.843552e-01	ci left: 9.320851e-06	ci right 1.722094e-05	k: 44	n:3430000
Cons ci ratio: 1.979012e-03	ci left: 5.330281e-01	ci right 5.340843e-01	k: 1830098	n:3430000
KS ci ratio: 6.198027e-01	ci left: 8.085380e-06	ci right 1.554349e-05	k: 39	n:3430000
IFNA10   3430000 perm   4965 sec   (691 perm/sec)   p_kst 1.137026e-05   p_cons 5.335563e-01   p_joint 1.282799e-05

Joint ci ratio: 5.843552e-01	ci left: 9.293755e-06	ci right 1.717088e-05	k: 44	n:3440000
Cons ci ratio: 1.976173e-03	ci left: 5.330189e-01	ci right 5.340735e-01	k: 1835399	n:3440000
KS ci ratio: 6.198027e-01	ci left: 8.061876e-06	ci right 1.549831e-05	k: 39	n:3440000
IFNA10   3440000 perm   4993 sec   (689 perm/sec)   p_kst 1.133721e-05   p_cons 5.335462e-01   p_joint 1.279070e-05

Joint ci ratio: 5.843552e-01	ci left: 9.266817e-06	ci right 1.712111e-05	k: 44	n:3450000
Cons ci ratio: 1.973233e-03	ci left: 5.330383e-01	ci right 5.340915e-01	k: 1840799	n:3450000
KS ci ratio: 6.198027e-01	ci left: 8.038508e-06	ci right 1.545338e-05	k: 39	n:3450000
IFNA10   3450000 perm   5021 sec   (687 perm/sec)   p_kst 1.130435e-05   p_cons 5.335649e-01   p_joint 1.275362e-05

Joint ci ratio: 5.843552e-01	ci left: 9.240034e-06	ci right 1.707162e-05	k: 44	n:3460000
Cons ci ratio: 1.970414e-03	ci left: 5.330302e-01	ci right 5.340818e-01	k: 1846104	n:3460000
KS ci ratio: 6.198027e-01	ci left: 8.015276e-06	ci right 1.540872e-05	k: 39	n:3460000
IFNA10   3460000 perm   5048 sec   (685 perm/sec)   p_kst 1.127168e-05   p_cons 5.335561e-01   p_joint 1.271676e-05

Joint ci ratio: 5.843552e-01	ci left: 9.213406e-06	ci right 1.702243e-05	k: 44	n:3470000
Cons ci ratio: 1.967544e-03	ci left: 5.330383e-01	ci right 5.340884e-01	k: 1851465	n:3470000
KS ci ratio: 6.198028e-01	ci left: 7.992177e-06	ci right 1.536432e-05	k: 39	n:3470000
IFNA10   3470000 perm   5077 sec   (684 perm/sec)   p_kst 1.123919e-05   p_cons 5.335634e-01   p_joint 1.268012e-05

Joint ci ratio: 5.843552e-01	ci left: 9.186930e-06	ci right 1.697351e-05	k: 44	n:3480000
Cons ci ratio: 1.964783e-03	ci left: 5.330220e-01	ci right 5.340705e-01	k: 1856741	n:3480000
KS ci ratio: 6.198028e-01	ci left: 7.969211e-06	ci right 1.532016e-05	k: 39	n:3480000
IFNA10   3480000 perm   5105 sec   (682 perm/sec)   p_kst 1.120690e-05   p_cons 5.335463e-01   p_joint 1.264368e-05

Joint ci ratio: 5.843552e-01	ci left: 9.160607e-06	ci right 1.692488e-05	k: 44	n:3490000
Cons ci ratio: 1.961950e-03	ci left: 5.330266e-01	ci right 5.340736e-01	k: 1862090	n:3490000
KS ci ratio: 6.198028e-01	ci left: 7.946376e-06	ci right 1.527627e-05	k: 39	n:3490000
IFNA10   3490000 perm   5134 sec   (680 perm/sec)   p_kst 1.117479e-05   p_cons 5.335501e-01   p_joint 1.260745e-05

Joint ci ratio: 5.843553e-01	ci left: 9.134434e-06	ci right 1.687652e-05	k: 44	n:3500000
Cons ci ratio: 1.959244e-03	ci left: 5.330023e-01	ci right 5.340479e-01	k: 1867338	n:3500000
KS ci ratio: 6.198028e-01	ci left: 7.923672e-06	ci right 1.523262e-05	k: 39	n:3500000
IFNA10   3500000 perm   5161 sec   (678 perm/sec)   p_kst 1.114286e-05   p_cons 5.335251e-01   p_joint 1.257143e-05

Joint ci ratio: 5.779686e-01	ci left: 9.351385e-06	ci right 1.715482e-05	k: 45	n:3510000
Cons ci ratio: 1.956416e-03	ci left: 5.330121e-01	ci right 5.340562e-01	k: 1872705	n:3510000
KS ci ratio: 6.121975e-01	ci left: 8.141490e-06	ci right 1.551810e-05	k: 40	n:3510000
IFNA10   3510000 perm   5190 sec   (676 perm/sec)   p_kst 1.139601e-05   p_cons 5.335342e-01   p_joint 1.282051e-05

Joint ci ratio: 5.779686e-01	ci left: 9.324818e-06	ci right 1.710608e-05	k: 45	n:3520000
Cons ci ratio: 1.953560e-03	ci left: 5.330318e-01	ci right 5.340744e-01	k: 1878107	n:3520000
KS ci ratio: 6.121975e-01	ci left: 8.118360e-06	ci right 1.547402e-05	k: 40	n:3520000
IFNA10   3520000 perm   5219 sec   (674 perm/sec)   p_kst 1.136364e-05   p_cons 5.335531e-01   p_joint 1.278409e-05

Joint ci ratio: 5.779686e-01	ci left: 9.298402e-06	ci right 1.705762e-05	k: 45	n:3530000
Cons ci ratio: 1.950837e-03	ci left: 5.330208e-01	ci right 5.340619e-01	k: 1883401	n:3530000
KS ci ratio: 6.121975e-01	ci left: 8.095362e-06	ci right 1.543018e-05	k: 40	n:3530000
IFNA10   3530000 perm   5247 sec   (673 perm/sec)   p_kst 1.133144e-05   p_cons 5.335414e-01   p_joint 1.274788e-05

Joint ci ratio: 5.779686e-01	ci left: 9.272136e-06	ci right 1.700944e-05	k: 45	n:3540000
Cons ci ratio: 1.948084e-03	ci left: 5.330205e-01	ci right 5.340602e-01	k: 1888733	n:3540000
KS ci ratio: 6.121975e-01	ci left: 8.072494e-06	ci right 1.538659e-05	k: 40	n:3540000
IFNA10   3540000 perm   5275 sec   (671 perm/sec)   p_kst 1.129944e-05   p_cons 5.335404e-01   p_joint 1.271186e-05

Joint ci ratio: 5.779686e-01	ci left: 9.246017e-06	ci right 1.696152e-05	k: 45	n:3550000
Cons ci ratio: 1.945341e-03	ci left: 5.330206e-01	ci right 5.340588e-01	k: 1894066	n:3550000
KS ci ratio: 6.121975e-01	ci left: 8.049754e-06	ci right 1.534325e-05	k: 40	n:3550000
IFNA10   3550000 perm   5304 sec   (669 perm/sec)   p_kst 1.126761e-05   p_cons 5.335397e-01   p_joint 1.267606e-05

Joint ci ratio: 5.779687e-01	ci left: 9.220045e-06	ci right 1.691388e-05	k: 45	n:3560000
Cons ci ratio: 1.942551e-03	ci left: 5.330355e-01	ci right 5.340723e-01	k: 1899452	n:3560000
KS ci ratio: 6.121975e-01	ci left: 8.027143e-06	ci right 1.530015e-05	k: 40	n:3560000
IFNA10   3560000 perm   5333 sec   (668 perm/sec)   p_kst 1.123596e-05   p_cons 5.335539e-01   p_joint 1.264045e-05

Joint ci ratio: 5.779687e-01	ci left: 9.194219e-06	ci right 1.686650e-05	k: 45	n:3570000
Cons ci ratio: 1.939802e-03	ci left: 5.330431e-01	ci right 5.340784e-01	k: 1904812	n:3570000
KS ci ratio: 6.121975e-01	ci left: 8.004658e-06	ci right 1.525729e-05	k: 40	n:3570000
IFNA10   3570000 perm   5361 sec   (666 perm/sec)   p_kst 1.120448e-05   p_cons 5.335608e-01   p_joint 1.260504e-05

Joint ci ratio: 5.779687e-01	ci left: 9.168536e-06	ci right 1.681939e-05	k: 45	n:3580000
Cons ci ratio: 1.937053e-03	ci left: 5.330535e-01	ci right 5.340873e-01	k: 1910182	n:3580000
KS ci ratio: 6.121976e-01	ci left: 7.982298e-06	ci right 1.521468e-05	k: 40	n:3580000
IFNA10   3580000 perm   5389 sec   (664 perm/sec)   p_kst 1.117318e-05   p_cons 5.335704e-01   p_joint 1.256983e-05

Joint ci ratio: 5.779687e-01	ci left: 9.142997e-06	ci right 1.677254e-05	k: 45	n:3590000
Cons ci ratio: 1.934404e-03	ci left: 5.330412e-01	ci right 5.340735e-01	k: 1915471	n:3590000
KS ci ratio: 6.121976e-01	ci left: 7.960063e-06	ci right 1.517229e-05	k: 40	n:3590000
IFNA10   3590000 perm   5417 sec   (663 perm/sec)   p_kst 1.114206e-05   p_cons 5.335574e-01   p_joint 1.253482e-05

Joint ci ratio: 5.779687e-01	ci left: 9.117600e-06	ci right 1.672595e-05	k: 45	n:3600000
Cons ci ratio: 1.931746e-03	ci left: 5.330339e-01	ci right 5.340649e-01	k: 1920778	n:3600000
KS ci ratio: 6.121976e-01	ci left: 7.937952e-06	ci right 1.513015e-05	k: 40	n:3600000
IFNA10   3600000 perm   5446 sec   (661 perm/sec)   p_kst 1.111111e-05   p_cons 5.335494e-01   p_joint 1.250000e-05

Joint ci ratio: 6.533300e-01	ci left: 6.753134e-06	ci right 1.348378e-05	k: 35	n:3610000
Cons ci ratio: 1.929146e-03	ci left: 5.330149e-01	ci right 5.340444e-01	k: 1926042	n:3610000
KS ci ratio: 6.048655e-01	ci left: 8.150236e-06	ci right 1.540748e-05	k: 41	n:3610000
IFNA10   3610000 perm   5474 sec   (659 perm/sec)   p_kst 1.135734e-05   p_cons 5.335296e-01   p_joint 9.695291e-06

Joint ci ratio: 6.533300e-01	ci left: 6.734479e-06	ci right 1.344653e-05	k: 35	n:3620000
Cons ci ratio: 1.926505e-03	ci left: 5.330089e-01	ci right 5.340369e-01	k: 1931353	n:3620000
KS ci ratio: 6.048655e-01	ci left: 8.127721e-06	ci right 1.536492e-05	k: 41	n:3620000
IFNA10   3620000 perm   5503 sec   (658 perm/sec)   p_kst 1.132597e-05   p_cons 5.335229e-01   p_joint 9.668508e-06

Joint ci ratio: 6.533300e-01	ci left: 6.715927e-06	ci right 1.340949e-05	k: 35	n:3630000
Cons ci ratio: 1.923907e-03	ci left: 5.329949e-01	ci right 5.340216e-01	k: 1936635	n:3630000
KS ci ratio: 6.048655e-01	ci left: 8.105331e-06	ci right 1.532259e-05	k: 41	n:3630000
IFNA10   3630000 perm   5532 sec   (656 perm/sec)   p_kst 1.129477e-05   p_cons 5.335083e-01   p_joint 9.641873e-06

Joint ci ratio: 6.533300e-01	ci left: 6.697477e-06	ci right 1.337265e-05	k: 35	n:3640000
Cons ci ratio: 1.921397e-03	ci left: 5.329607e-01	ci right 5.339860e-01	k: 1941843	n:3640000
KS ci ratio: 6.048656e-01	ci left: 8.083063e-06	ci right 1.528050e-05	k: 41	n:3640000
IFNA10   3640000 perm   5561 sec   (655 perm/sec)   p_kst 1.126374e-05   p_cons 5.334734e-01   p_joint 9.615385e-06

Joint ci ratio: 6.533300e-01	ci left: 6.679127e-06	ci right 1.333601e-05	k: 35	n:3650000
Cons ci ratio: 1.918831e-03	ci left: 5.329437e-01	ci right 5.339675e-01	k: 1947113	n:3650000
KS ci ratio: 6.048656e-01	ci left: 8.060918e-06	ci right 1.523864e-05	k: 41	n:3650000
IFNA10   3650000 perm   5589 sec   (653 perm/sec)   p_kst 1.123288e-05   p_cons 5.334556e-01   p_joint 9.589041e-06

Joint ci ratio: 6.533300e-01	ci left: 6.660878e-06	ci right 1.329957e-05	k: 35	n:3660000
Cons ci ratio: 1.916154e-03	ci left: 5.329584e-01	ci right 5.339809e-01	k: 1952499	n:3660000
KS ci ratio: 6.048656e-01	ci left: 8.038894e-06	ci right 1.519700e-05	k: 41	n:3660000
IFNA10   3660000 perm   5618 sec   (651 perm/sec)   p_kst 1.120219e-05   p_cons 5.334697e-01   p_joint 9.562842e-06

Joint ci ratio: 6.533300e-01	ci left: 6.642729e-06	ci right 1.326333e-05	k: 35	n:3670000
Cons ci ratio: 1.913549e-03	ci left: 5.329573e-01	ci right 5.339784e-01	k: 1957827	n:3670000
KS ci ratio: 6.048656e-01	ci left: 8.016989e-06	ci right 1.515559e-05	k: 41	n:3670000
IFNA10   3670000 perm   5649 sec   (650 perm/sec)   p_kst 1.117166e-05   p_cons 5.334678e-01   p_joint 9.536785e-06

Joint ci ratio: 6.533300e-01	ci left: 6.624678e-06	ci right 1.322729e-05	k: 35	n:3680000
Cons ci ratio: 1.910945e-03	ci left: 5.329586e-01	ci right 5.339783e-01	k: 1963164	n:3680000
KS ci ratio: 6.048656e-01	ci left: 7.995204e-06	ci right 1.511441e-05	k: 41	n:3680000
IFNA10   3680000 perm   5677 sec   (648 perm/sec)   p_kst 1.114130e-05   p_cons 5.334685e-01   p_joint 9.510870e-06

Joint ci ratio: 6.533301e-01	ci left: 6.606725e-06	ci right 1.319145e-05	k: 35	n:3690000
Cons ci ratio: 1.908379e-03	ci left: 5.329526e-01	ci right 5.339709e-01	k: 1968474	n:3690000
KS ci ratio: 6.048656e-01	ci left: 7.973537e-06	ci right 1.507345e-05	k: 41	n:3690000
IFNA10   3690000 perm   5707 sec   (647 perm/sec)   p_kst 1.111111e-05   p_cons 5.334618e-01   p_joint 9.485095e-06

Joint ci ratio: 6.533301e-01	ci left: 6.588869e-06	ci right 1.315579e-05	k: 35	n:3700000
Cons ci ratio: 1.905770e-03	ci left: 5.329607e-01	ci right 5.339776e-01	k: 1973836	n:3700000
KS ci ratio: 6.048656e-01	ci left: 7.951986e-06	ci right 1.503271e-05	k: 41	n:3700000
IFNA10   3700000 perm   5736 sec   (645 perm/sec)   p_kst 1.108108e-05   p_cons 5.334692e-01   p_joint 9.459459e-06

Joint ci ratio: 6.533301e-01	ci left: 6.571109e-06	ci right 1.312033e-05	k: 35	n:3710000
Cons ci ratio: 1.903198e-03	ci left: 5.329620e-01	ci right 5.339776e-01	k: 1979173	n:3710000
KS ci ratio: 6.048656e-01	ci left: 7.930553e-06	ci right 1.499219e-05	k: 41	n:3710000
IFNA10   3710000 perm   5765 sec   (643 perm/sec)   p_kst 1.105121e-05   p_cons 5.334698e-01   p_joint 9.433962e-06

Joint ci ratio: 6.533301e-01	ci left: 6.553445e-06	ci right 1.308506e-05	k: 35	n:3720000
Cons ci ratio: 1.900688e-03	ci left: 5.329496e-01	ci right 5.339638e-01	k: 1984459	n:3720000
KS ci ratio: 6.048656e-01	ci left: 7.909234e-06	ci right 1.495189e-05	k: 41	n:3720000
IFNA10   3720000 perm   5795 sec   (642 perm/sec)   p_kst 1.102151e-05   p_cons 5.334567e-01   p_joint 9.408602e-06

Joint ci ratio: 6.533301e-01	ci left: 6.535875e-06	ci right 1.304998e-05	k: 35	n:3730000
Cons ci ratio: 1.898151e-03	ci left: 5.329469e-01	ci right 5.339597e-01	k: 1989781	n:3730000
KS ci ratio: 6.048656e-01	ci left: 7.888029e-06	ci right 1.491180e-05	k: 41	n:3730000
IFNA10   3730000 perm   5824 sec   (640 perm/sec)   p_kst 1.099196e-05   p_cons 5.334534e-01   p_joint 9.383378e-06

Joint ci ratio: 6.533301e-01	ci left: 6.518399e-06	ci right 1.301509e-05	k: 35	n:3740000
Cons ci ratio: 1.895572e-03	ci left: 5.329581e-01	ci right 5.339696e-01	k: 1995155	n:3740000
KS ci ratio: 6.048657e-01	ci left: 7.866938e-06	ci right 1.487193e-05	k: 41	n:3740000
IFNA10   3740000 perm   5853 sec   (639 perm/sec)   p_kst 1.096257e-05   p_cons 5.334639e-01   p_joint 9.358289e-06

Joint ci ratio: 6.533301e-01	ci left: 6.501017e-06	ci right 1.298038e-05	k: 35	n:3750000
Cons ci ratio: 1.893033e-03	ci left: 5.329613e-01	ci right 5.339714e-01	k: 2000499	n:3750000
KS ci ratio: 6.048657e-01	ci left: 7.845960e-06	ci right 1.483227e-05	k: 41	n:3750000
IFNA10   3750000 perm   5883 sec   (637 perm/sec)   p_kst 1.093333e-05   p_cons 5.334664e-01   p_joint 9.333333e-06

Joint ci ratio: 6.444408e-01	ci left: 6.705848e-06	ci right 1.325508e-05	k: 36	n:3760000
Cons ci ratio: 1.890497e-03	ci left: 5.329666e-01	ci right 5.339754e-01	k: 2005851	n:3760000
KS ci ratio: 5.977909e-01	ci left: 8.050518e-06	ci right 1.509885e-05	k: 42	n:3760000
IFNA10   3760000 perm   5912 sec   (636 perm/sec)   p_kst 1.117021e-05   p_cons 5.334710e-01   p_joint 9.574468e-06

Joint ci ratio: 6.444408e-01	ci left: 6.688061e-06	ci right 1.321992e-05	k: 36	n:3770000
Cons ci ratio: 1.888002e-03	ci left: 5.329634e-01	ci right 5.339708e-01	k: 2011171	n:3770000
KS ci ratio: 5.977909e-01	ci left: 8.029164e-06	ci right 1.505880e-05	k: 42	n:3770000
IFNA10   3770000 perm   5942 sec   (634 perm/sec)   p_kst 1.114058e-05   p_cons 5.334671e-01   p_joint 9.549072e-06

Joint ci ratio: 6.444408e-01	ci left: 6.670368e-06	ci right 1.318494e-05	k: 36	n:3780000
Cons ci ratio: 1.885503e-03	ci left: 5.329641e-01	ci right 5.339702e-01	k: 2016506	n:3780000
KS ci ratio: 5.977909e-01	ci left: 8.007923e-06	ci right 1.501897e-05	k: 42	n:3780000
IFNA10   3780000 perm   5973 sec   (633 perm/sec)   p_kst 1.111111e-05   p_cons 5.334672e-01   p_joint 9.523810e-06

Joint ci ratio: 6.444408e-01	ci left: 6.652768e-06	ci right 1.315015e-05	k: 36	n:3790000
Cons ci ratio: 1.882973e-03	ci left: 5.329757e-01	ci right 5.339805e-01	k: 2021882	n:3790000
KS ci ratio: 5.977909e-01	ci left: 7.986794e-06	ci right 1.497934e-05	k: 42	n:3790000
IFNA10   3790000 perm   6003 sec   (631 perm/sec)   p_kst 1.108179e-05   p_cons 5.334781e-01   p_joint 9.498681e-06

Joint ci ratio: 6.359047e-01	ci left: 6.855644e-06	ci right 1.342093e-05	k: 37	n:3800000
Cons ci ratio: 1.880515e-03	ci left: 5.329706e-01	ci right 5.339741e-01	k: 2027195	n:3800000
KS ci ratio: 5.909587e-01	ci left: 8.189305e-06	ci right 1.524226e-05	k: 43	n:3800000
IFNA10   3800000 perm   6032 sec   (630 perm/sec)   p_kst 1.131579e-05   p_cons 5.334724e-01   p_joint 9.736842e-06

Joint ci ratio: 6.359047e-01	ci left: 6.837651e-06	ci right 1.338570e-05	k: 37	n:3810000
Cons ci ratio: 1.878042e-03	ci left: 5.329721e-01	ci right 5.339743e-01	k: 2032533	n:3810000
KS ci ratio: 5.909587e-01	ci left: 8.167810e-06	ci right 1.520226e-05	k: 43	n:3810000
IFNA10   3810000 perm   6062 sec   (628 perm/sec)   p_kst 1.128609e-05   p_cons 5.334732e-01   p_joint 9.711286e-06

Joint ci ratio: 6.359047e-01	ci left: 6.819751e-06	ci right 1.335066e-05	k: 37	n:3820000
Cons ci ratio: 1.875556e-03	ci left: 5.329799e-01	ci right 5.339807e-01	k: 2037895	n:3820000
KS ci ratio: 5.909588e-01	ci left: 8.146429e-06	ci right 1.516246e-05	k: 43	n:3820000
IFNA10   3820000 perm   6093 sec   (627 perm/sec)   p_kst 1.125654e-05   p_cons 5.334804e-01   p_joint 9.685864e-06

Joint ci ratio: 6.276991e-01	ci left: 7.021174e-06	ci right 1.361824e-05	k: 38	n:3830000
Cons ci ratio: 1.873086e-03	ci left: 5.329859e-01	ci right 5.339854e-01	k: 2043250	n:3830000
KS ci ratio: 5.843556e-01	ci left: 8.347393e-06	ci right 1.542241e-05	k: 44	n:3830000
IFNA10   3830000 perm   6123 sec   (625 perm/sec)   p_kst 1.148825e-05   p_cons 5.334856e-01   p_joint 9.921671e-06

Joint ci ratio: 6.276991e-01	ci left: 7.002890e-06	ci right 1.358278e-05	k: 38	n:3840000
Cons ci ratio: 1.870782e-03	ci left: 5.329501e-01	ci right 5.339483e-01	k: 2048445	n:3840000
KS ci ratio: 5.843556e-01	ci left: 8.325654e-06	ci right 1.538225e-05	k: 44	n:3840000
IFNA10   3840000 perm   6154 sec   (624 perm/sec)   p_kst 1.145833e-05   p_cons 5.334492e-01   p_joint 9.895833e-06

Joint ci ratio: 6.276991e-01	ci left: 6.984701e-06	ci right 1.354750e-05	k: 38	n:3850000
Cons ci ratio: 1.868413e-03	ci left: 5.329342e-01	ci right 5.339312e-01	k: 2053716	n:3850000
KS ci ratio: 5.843556e-01	ci left: 8.304029e-06	ci right 1.534229e-05	k: 44	n:3850000
IFNA10   3850000 perm   6185 sec   (622 perm/sec)   p_kst 1.142857e-05   p_cons 5.334327e-01   p_joint 9.870130e-06

Joint ci ratio: 6.276991e-01	ci left: 6.966605e-06	ci right 1.351240e-05	k: 38	n:3860000
Cons ci ratio: 1.865955e-03	ci left: 5.329444e-01	ci right 5.339400e-01	k: 2059087	n:3860000
KS ci ratio: 5.843556e-01	ci left: 8.282516e-06	ci right 1.530255e-05	k: 44	n:3860000
IFNA10   3860000 perm   6215 sec   (621 perm/sec)   p_kst 1.139896e-05   p_cons 5.334422e-01   p_joint 9.844560e-06

Joint ci ratio: 6.198031e-01	ci left: 7.166111e-06	ci right 1.377628e-05	k: 39	n:3870000
Cons ci ratio: 1.863529e-03	ci left: 5.329488e-01	ci right 5.339431e-01	k: 2064436	n:3870000
KS ci ratio: 5.779690e-01	ci left: 8.481487e-06	ci right 1.555902e-05	k: 45	n:3870000
IFNA10   3870000 perm   6246 sec   (620 perm/sec)   p_kst 1.162791e-05   p_cons 5.334460e-01   p_joint 1.007752e-05

Joint ci ratio: 6.198031e-01	ci left: 7.147642e-06	ci right 1.374077e-05	k: 39	n:3880000
Cons ci ratio: 1.861112e-03	ci left: 5.329532e-01	ci right 5.339462e-01	k: 2069785	n:3880000
KS ci ratio: 5.779690e-01	ci left: 8.459628e-06	ci right 1.551892e-05	k: 45	n:3880000
IFNA10   3880000 perm   6276 sec   (618 perm/sec)   p_kst 1.159794e-05   p_cons 5.334497e-01   p_joint 1.005155e-05

Joint ci ratio: 6.198032e-01	ci left: 7.129267e-06	ci right 1.370545e-05	k: 39	n:3890000
Cons ci ratio: 1.858716e-03	ci left: 5.329545e-01	ci right 5.339462e-01	k: 2075122	n:3890000
KS ci ratio: 5.779690e-01	ci left: 8.437881e-06	ci right 1.547903e-05	k: 45	n:3890000
IFNA10   3890000 perm   6308 sec   (617 perm/sec)   p_kst 1.156812e-05   p_cons 5.334504e-01   p_joint 1.002571e-05

Joint ci ratio: 6.198032e-01	ci left: 7.110987e-06	ci right 1.367030e-05	k: 39	n:3900000
Cons ci ratio: 1.856411e-03	ci left: 5.329337e-01	ci right 5.339242e-01	k: 2080373	n:3900000
KS ci ratio: 5.779690e-01	ci left: 8.416245e-06	ci right 1.543934e-05	k: 45	n:3900000
IFNA10   3900000 perm   6339 sec   (615 perm/sec)   p_kst 1.153846e-05   p_cons 5.334290e-01   p_joint 1.000000e-05

Joint ci ratio: 6.198032e-01	ci left: 7.092800e-06	ci right 1.363534e-05	k: 39	n:3910000
Cons ci ratio: 1.854090e-03	ci left: 5.329197e-01	ci right 5.339089e-01	k: 2085650	n:3910000
KS ci ratio: 5.779690e-01	ci left: 8.394720e-06	ci right 1.539985e-05	k: 45	n:3910000
IFNA10   3910000 perm   6369 sec   (614 perm/sec)   p_kst 1.150895e-05   p_cons 5.334143e-01   p_joint 9.974425e-06

Joint ci ratio: 6.198032e-01	ci left: 7.074706e-06	ci right 1.360056e-05	k: 39	n:3920000
Cons ci ratio: 1.851739e-03	ci left: 5.329162e-01	ci right 5.339042e-01	k: 2090968	n:3920000
KS ci ratio: 5.779690e-01	ci left: 8.373305e-06	ci right 1.536057e-05	k: 45	n:3920000
IFNA10   3920000 perm   6400 sec   (613 perm/sec)   p_kst 1.147959e-05   p_cons 5.334102e-01   p_joint 9.948980e-06

Joint ci ratio: 5.436025e-01	ci left: 9.662318e-06	ci right 1.706245e-05	k: 51	n:3930000
Cons ci ratio: 1.849373e-03	ci left: 5.329193e-01	ci right 5.339061e-01	k: 2096312	n:3930000
KS ci ratio: 5.717873e-01	ci left: 8.569422e-06	ci right 1.561258e-05	k: 46	n:3930000
IFNA10   3930000 perm   6430 sec   (611 perm/sec)   p_kst 1.170483e-05   p_cons 5.334127e-01   p_joint 1.297710e-05

Joint ci ratio: 5.436025e-01	ci left: 9.637794e-06	ci right 1.701915e-05	k: 51	n:3940000
Cons ci ratio: 1.847090e-03	ci left: 5.329022e-01	ci right 5.338876e-01	k: 2101576	n:3940000
KS ci ratio: 5.717873e-01	ci left: 8.547673e-06	ci right 1.557295e-05	k: 46	n:3940000
IFNA10   3940000 perm   6460 sec   (610 perm/sec)   p_kst 1.167513e-05   p_cons 5.333949e-01   p_joint 1.294416e-05

Joint ci ratio: 5.436025e-01	ci left: 9.613394e-06	ci right 1.697606e-05	k: 51	n:3950000
Cons ci ratio: 1.844743e-03	ci left: 5.329048e-01	ci right 5.338890e-01	k: 2106918	n:3950000
KS ci ratio: 5.717873e-01	ci left: 8.526033e-06	ci right 1.553353e-05	k: 46	n:3950000
IFNA10   3950000 perm   6491 sec   (608 perm/sec)   p_kst 1.164557e-05   p_cons 5.333970e-01   p_joint 1.291139e-05

Joint ci ratio: 5.436026e-01	ci left: 9.589118e-06	ci right 1.693319e-05	k: 51	n:3960000
Cons ci ratio: 1.842399e-03	ci left: 5.329090e-01	ci right 5.338920e-01	k: 2112266	n:3960000
KS ci ratio: 5.717873e-01	ci left: 8.504502e-06	ci right 1.549430e-05	k: 46	n:3960000
IFNA10   3960000 perm   6523 sec   (607 perm/sec)   p_kst 1.161616e-05   p_cons 5.334005e-01   p_joint 1.287879e-05

Joint ci ratio: 5.436026e-01	ci left: 9.564964e-06	ci right 1.689054e-05	k: 51	n:3970000
Cons ci ratio: 1.840016e-03	ci left: 5.329262e-01	ci right 5.339080e-01	k: 2117666	n:3970000
KS ci ratio: 5.717873e-01	ci left: 8.483080e-06	ci right 1.545527e-05	k: 46	n:3970000
IFNA10   3970000 perm   6553 sec   (606 perm/sec)   p_kst 1.158690e-05   p_cons 5.334171e-01   p_joint 1.284635e-05

Joint ci ratio: 5.436026e-01	ci left: 9.540931e-06	ci right 1.684810e-05	k: 51	n:3980000
Cons ci ratio: 1.837696e-03	ci left: 5.329288e-01	ci right 5.339093e-01	k: 2123008	n:3980000
KS ci ratio: 5.717873e-01	ci left: 8.461766e-06	ci right 1.541644e-05	k: 46	n:3980000
IFNA10   3980000 perm   6584 sec   (605 perm/sec)   p_kst 1.155779e-05   p_cons 5.334191e-01   p_joint 1.281407e-05

Joint ci ratio: 5.436026e-01	ci left: 9.517019e-06	ci right 1.680588e-05	k: 51	n:3990000
Cons ci ratio: 1.835394e-03	ci left: 5.329286e-01	ci right 5.339079e-01	k: 2128339	n:3990000
KS ci ratio: 5.717873e-01	ci left: 8.440559e-06	ci right 1.537780e-05	k: 46	n:3990000
IFNA10   3990000 perm   6615 sec   (603 perm/sec)   p_kst 1.152882e-05   p_cons 5.334183e-01   p_joint 1.278195e-05

Joint ci ratio: 5.384498e-01	ci left: 9.709037e-06	ci right 1.704774e-05	k: 52	n:4000000
Cons ci ratio: 1.833137e-03	ci left: 5.329187e-01	ci right 5.338967e-01	k: 2133631	n:4000000
KS ci ratio: 5.657998e-01	ci left: 8.633470e-06	ci right 1.562498e-05	k: 47	n:4000000
IFNA10   4000000 perm   6647 sec   (602 perm/sec)   p_kst 1.175000e-05   p_cons 5.334077e-01   p_joint 1.300000e-05

Joint ci ratio: 5.384498e-01	ci left: 9.684824e-06	ci right 1.700522e-05	k: 52	n:4010000
Cons ci ratio: 1.830801e-03	ci left: 5.329328e-01	ci right 5.339096e-01	k: 2139019	n:4010000
KS ci ratio: 5.657998e-01	ci left: 8.611941e-06	ci right 1.558601e-05	k: 47	n:4010000
IFNA10   4010000 perm   6679 sec   (600 perm/sec)   p_kst 1.172070e-05   p_cons 5.334212e-01   p_joint 1.296758e-05

Joint ci ratio: 5.384498e-01	ci left: 9.660733e-06	ci right 1.696292e-05	k: 52	n:4020000
Cons ci ratio: 1.828564e-03	ci left: 5.329221e-01	ci right 5.338977e-01	k: 2144308	n:4020000
KS ci ratio: 5.657998e-01	ci left: 8.590518e-06	ci right 1.554724e-05	k: 47	n:4020000
IFNA10   4020000 perm   6710 sec   (599 perm/sec)   p_kst 1.169154e-05   p_cons 5.334100e-01   p_joint 1.293532e-05

Joint ci ratio: 5.384498e-01	ci left: 9.636761e-06	ci right 1.692083e-05	k: 52	n:4030000
Cons ci ratio: 1.826336e-03	ci left: 5.329110e-01	ci right 5.338854e-01	k: 2149595	n:4030000
KS ci ratio: 5.657998e-01	ci left: 8.569201e-06	ci right 1.550866e-05	k: 47	n:4030000
IFNA10   4030000 perm   6741 sec   (598 perm/sec)   p_kst 1.166253e-05   p_cons 5.333983e-01   p_joint 1.290323e-05

Joint ci ratio: 5.384498e-01	ci left: 9.612907e-06	ci right 1.687895e-05	k: 52	n:4040000
Cons ci ratio: 1.824101e-03	ci left: 5.329045e-01	ci right 5.338777e-01	k: 2154900	n:4040000
KS ci ratio: 5.657998e-01	ci left: 8.547990e-06	ci right 1.547028e-05	k: 47	n:4040000
IFNA10   4040000 perm   6773 sec   (596 perm/sec)   p_kst 1.163366e-05   p_cons 5.333911e-01   p_joint 1.287129e-05

Joint ci ratio: 5.384498e-01	ci left: 9.589172e-06	ci right 1.683727e-05	k: 52	n:4050000
Cons ci ratio: 1.821861e-03	ci left: 5.329014e-01	ci right 5.338734e-01	k: 2160219	n:4050000
KS ci ratio: 5.657998e-01	ci left: 8.526884e-06	ci right 1.543208e-05	k: 47	n:4050000
IFNA10   4050000 perm   6805 sec   (595 perm/sec)   p_kst 1.160494e-05   p_cons 5.333874e-01   p_joint 1.283951e-05

Joint ci ratio: 5.384498e-01	ci left: 9.565553e-06	ci right 1.679580e-05	k: 52	n:4060000
Cons ci ratio: 1.819568e-03	ci left: 5.329151e-01	ci right 5.338859e-01	k: 2165606	n:4060000
KS ci ratio: 5.657998e-01	ci left: 8.505882e-06	ci right 1.539407e-05	k: 47	n:4060000
IFNA10   4060000 perm   6836 sec   (594 perm/sec)   p_kst 1.157635e-05   p_cons 5.334005e-01   p_joint 1.280788e-05

Joint ci ratio: 5.384498e-01	ci left: 9.542050e-06	ci right 1.675453e-05	k: 52	n:4070000
Cons ci ratio: 1.817367e-03	ci left: 5.329058e-01	ci right 5.338754e-01	k: 2170900	n:4070000
KS ci ratio: 5.657999e-01	ci left: 8.484983e-06	ci right 1.535625e-05	k: 47	n:4070000
IFNA10   4070000 perm   6868 sec   (593 perm/sec)   p_kst 1.154791e-05   p_cons 5.333907e-01   p_joint 1.277641e-05

Joint ci ratio: 5.384498e-01	ci left: 9.518663e-06	ci right 1.671347e-05	k: 52	n:4080000
Cons ci ratio: 1.815100e-03	ci left: 5.329170e-01	ci right 5.338854e-01	k: 2176277	n:4080000
KS ci ratio: 5.657999e-01	ci left: 8.464186e-06	ci right 1.531861e-05	k: 47	n:4080000
IFNA10   4080000 perm   6900 sec   (591 perm/sec)   p_kst 1.151961e-05   p_cons 5.334012e-01   p_joint 1.274510e-05

Joint ci ratio: 5.384499e-01	ci left: 9.495390e-06	ci right 1.667260e-05	k: 52	n:4090000
Cons ci ratio: 1.812869e-03	ci left: 5.329205e-01	ci right 5.338877e-01	k: 2181623	n:4090000
KS ci ratio: 5.657999e-01	ci left: 8.443492e-06	ci right 1.528115e-05	k: 47	n:4090000
IFNA10   4090000 perm   6932 sec   (590 perm/sec)   p_kst 1.149144e-05   p_cons 5.334042e-01   p_joint 1.271394e-05

Joint ci ratio: 5.384499e-01	ci left: 9.472230e-06	ci right 1.663194e-05	k: 52	n:4100000
Cons ci ratio: 1.810647e-03	ci left: 5.329240e-01	ci right 5.338901e-01	k: 2186969	n:4100000
KS ci ratio: 5.657999e-01	ci left: 8.422898e-06	ci right 1.524388e-05	k: 47	n:4100000
IFNA10   4100000 perm   6965 sec   (589 perm/sec)   p_kst 1.146341e-05   p_cons 5.334071e-01   p_joint 1.268293e-05

Joint ci ratio: 5.384499e-01	ci left: 9.449184e-06	ci right 1.659147e-05	k: 52	n:4110000
Cons ci ratio: 1.808492e-03	ci left: 5.329110e-01	ci right 5.338758e-01	k: 2192247	n:4110000
KS ci ratio: 5.657999e-01	ci left: 8.402404e-06	ci right 1.520679e-05	k: 47	n:4110000
IFNA10   4110000 perm   6997 sec   (587 perm/sec)   p_kst 1.143552e-05   p_cons 5.333934e-01   p_joint 1.265207e-05

Joint ci ratio: 5.384499e-01	ci left: 9.426249e-06	ci right 1.655120e-05	k: 52	n:4120000
Cons ci ratio: 1.806336e-03	ci left: 5.329004e-01	ci right 5.338641e-01	k: 2197535	n:4120000
KS ci ratio: 5.657999e-01	ci left: 8.382010e-06	ci right 1.516988e-05	k: 47	n:4120000
IFNA10   4120000 perm   7029 sec   (586 perm/sec)   p_kst 1.140777e-05   p_cons 5.333823e-01   p_joint 1.262136e-05

Joint ci ratio: 5.384499e-01	ci left: 9.403425e-06	ci right 1.651113e-05	k: 52	n:4130000
Cons ci ratio: 1.804091e-03	ci left: 5.329168e-01	ci right 5.338793e-01	k: 2202934	n:4130000
KS ci ratio: 5.657999e-01	ci left: 8.361714e-06	ci right 1.513315e-05	k: 47	n:4130000
IFNA10   4130000 perm   7061 sec   (585 perm/sec)   p_kst 1.138015e-05   p_cons 5.333981e-01   p_joint 1.259080e-05

Joint ci ratio: 5.384499e-01	ci left: 9.380711e-06	ci right 1.647124e-05	k: 52	n:4140000
Cons ci ratio: 1.801982e-03	ci left: 5.328978e-01	ci right 5.338592e-01	k: 2208187	n:4140000
KS ci ratio: 5.657999e-01	ci left: 8.341517e-06	ci right 1.509660e-05	k: 47	n:4140000
IFNA10   4140000 perm   7094 sec   (584 perm/sec)   p_kst 1.135266e-05   p_cons 5.333785e-01   p_joint 1.256039e-05

Joint ci ratio: 5.384499e-01	ci left: 9.358107e-06	ci right 1.643155e-05	k: 52	n:4150000
Cons ci ratio: 1.799834e-03	ci left: 5.328917e-01	ci right 5.338519e-01	k: 2213493	n:4150000
KS ci ratio: 5.657999e-01	ci left: 8.321417e-06	ci right 1.506022e-05	k: 47	n:4150000
IFNA10   4150000 perm   7126 sec   (582 perm/sec)   p_kst 1.132530e-05   p_cons 5.333718e-01   p_joint 1.253012e-05

Joint ci ratio: 5.384499e-01	ci left: 9.335612e-06	ci right 1.639206e-05	k: 52	n:4160000
Cons ci ratio: 1.797670e-03	ci left: 5.328921e-01	ci right 5.338511e-01	k: 2218826	n:4160000
KS ci ratio: 5.657999e-01	ci left: 8.301413e-06	ci right 1.502402e-05	k: 47	n:4160000
IFNA10   4160000 perm   7158 sec   (581 perm/sec)   p_kst 1.129808e-05   p_cons 5.333716e-01   p_joint 1.250000e-05

Joint ci ratio: 5.384499e-01	ci left: 9.313224e-06	ci right 1.635275e-05	k: 52	n:4170000
Cons ci ratio: 1.795532e-03	ci left: 5.328875e-01	ci right 5.338454e-01	k: 2224138	n:4170000
KS ci ratio: 5.657999e-01	ci left: 8.281506e-06	ci right 1.498799e-05	k: 47	n:4170000
IFNA10   4170000 perm   7191 sec   (580 perm/sec)   p_kst 1.127098e-05   p_cons 5.333664e-01   p_joint 1.247002e-05

Joint ci ratio: 5.334409e-01	ci left: 9.497774e-06	ci right 1.658497e-05	k: 53	n:4180000
Cons ci ratio: 1.793383e-03	ci left: 5.328879e-01	ci right 5.338446e-01	k: 2229471	n:4180000
KS ci ratio: 5.599967e-01	ci left: 8.466856e-06	ci right 1.522510e-05	k: 48	n:4180000
IFNA10   4180000 perm   7223 sec   (579 perm/sec)   p_kst 1.148325e-05   p_cons 5.333663e-01   p_joint 1.267943e-05

Joint ci ratio: 5.334409e-01	ci left: 9.475106e-06	ci right 1.654539e-05	k: 53	n:4190000
Cons ci ratio: 1.791202e-03	ci left: 5.328995e-01	ci right 5.338551e-01	k: 2234851	n:4190000
KS ci ratio: 5.599967e-01	ci left: 8.446649e-06	ci right 1.518876e-05	k: 48	n:4190000
IFNA10   4190000 perm   7256 sec   (577 perm/sec)   p_kst 1.145585e-05   p_cons 5.333773e-01   p_joint 1.264916e-05

Joint ci ratio: 5.334409e-01	ci left: 9.452546e-06	ci right 1.650599e-05	k: 53	n:4200000
Cons ci ratio: 1.789031e-03	ci left: 5.329104e-01	ci right 5.338648e-01	k: 2240228	n:4200000
KS ci ratio: 5.599967e-01	ci left: 8.426538e-06	ci right 1.515260e-05	k: 48	n:4200000
IFNA10   4200000 perm   7289 sec   (576 perm/sec)   p_kst 1.142857e-05   p_cons 5.333876e-01   p_joint 1.261905e-05

Joint ci ratio: 5.285692e-01	ci left: 9.635753e-06	ci right 1.673590e-05	k: 54	n:4210000
Cons ci ratio: 1.786908e-03	ci left: 5.329102e-01	ci right 5.338636e-01	k: 2245559	n:4210000
KS ci ratio: 5.543684e-01	ci left: 8.610575e-06	ci right 1.538729e-05	k: 49	n:4210000
IFNA10   4210000 perm   7322 sec   (575 perm/sec)   p_kst 1.163895e-05   p_cons 5.333869e-01   p_joint 1.282660e-05

Joint ci ratio: 5.285692e-01	ci left: 9.612920e-06	ci right 1.669624e-05	k: 54	n:4220000
Cons ci ratio: 1.784782e-03	ci left: 5.329127e-01	ci right 5.338649e-01	k: 2250901	n:4220000
KS ci ratio: 5.543684e-01	ci left: 8.590171e-06	ci right 1.535082e-05	k: 49	n:4220000
IFNA10   4220000 perm   7355 sec   (574 perm/sec)   p_kst 1.161137e-05   p_cons 5.333889e-01   p_joint 1.279621e-05

Joint ci ratio: 5.285692e-01	ci left: 9.590194e-06	ci right 1.665677e-05	k: 54	n:4230000
Cons ci ratio: 1.782668e-03	ci left: 5.329143e-01	ci right 5.338653e-01	k: 2256239	n:4230000
KS ci ratio: 5.543684e-01	ci left: 8.569863e-06	ci right 1.531453e-05	k: 49	n:4230000
IFNA10   4230000 perm   7388 sec   (573 perm/sec)   p_kst 1.158392e-05   p_cons 5.333898e-01   p_joint 1.276596e-05

Joint ci ratio: 5.285692e-01	ci left: 9.567576e-06	ci right 1.661749e-05	k: 54	n:4240000
Cons ci ratio: 1.780531e-03	ci left: 5.329243e-01	ci right 5.338742e-01	k: 2261613	n:4240000
KS ci ratio: 5.543684e-01	ci left: 8.549651e-06	ci right 1.527841e-05	k: 49	n:4240000
IFNA10   4240000 perm   7421 sec   (571 perm/sec)   p_kst 1.155660e-05   p_cons 5.333993e-01   p_joint 1.273585e-05

Joint ci ratio: 5.285692e-01	ci left: 9.545064e-06	ci right 1.657839e-05	k: 54	n:4250000
Cons ci ratio: 1.778414e-03	ci left: 5.329307e-01	ci right 5.338796e-01	k: 2266972	n:4250000
KS ci ratio: 5.543684e-01	ci left: 8.529534e-06	ci right 1.524247e-05	k: 49	n:4250000
IFNA10   4250000 perm   7454 sec   (570 perm/sec)   p_kst 1.152941e-05   p_cons 5.334052e-01   p_joint 1.270588e-05

Joint ci ratio: 5.285692e-01	ci left: 9.522658e-06	ci right 1.653947e-05	k: 54	n:4260000
Cons ci ratio: 1.776387e-03	ci left: 5.329139e-01	ci right 5.338616e-01	k: 2272232	n:4260000
KS ci ratio: 5.543684e-01	ci left: 8.509512e-06	ci right 1.520669e-05	k: 49	n:4260000
IFNA10   4260000 perm   7487 sec   (569 perm/sec)   p_kst 1.150235e-05   p_cons 5.333878e-01   p_joint 1.267606e-05

Joint ci ratio: 5.285692e-01	ci left: 9.500356e-06	ci right 1.650074e-05	k: 54	n:4270000
Cons ci ratio: 1.774314e-03	ci left: 5.329122e-01	ci right 5.338588e-01	k: 2277556	n:4270000
KS ci ratio: 5.543684e-01	ci left: 8.489583e-06	ci right 1.517107e-05	k: 49	n:4270000
IFNA10   4270000 perm   7520 sec   (568 perm/sec)   p_kst 1.147541e-05   p_cons 5.333855e-01   p_joint 1.264637e-05

Joint ci ratio: 5.285692e-01	ci left: 9.478159e-06	ci right 1.646218e-05	k: 54	n:4280000
Cons ci ratio: 1.772185e-03	ci left: 5.329282e-01	ci right 5.338737e-01	k: 2282956	n:4280000
KS ci ratio: 5.543684e-01	ci left: 8.469748e-06	ci right 1.513563e-05	k: 49	n:4280000
IFNA10   4280000 perm   7553 sec   (567 perm/sec)   p_kst 1.144860e-05   p_cons 5.334009e-01   p_joint 1.261682e-05

Joint ci ratio: 5.285692e-01	ci left: 9.456065e-06	ci right 1.642381e-05	k: 54	n:4290000
Cons ci ratio: 1.770095e-03	ci left: 5.329352e-01	ci right 5.338796e-01	k: 2288318	n:4290000
KS ci ratio: 5.543684e-01	ci left: 8.450005e-06	ci right 1.510034e-05	k: 49	n:4290000
IFNA10   4290000 perm   7586 sec   (566 perm/sec)   p_kst 1.142191e-05   p_cons 5.334075e-01   p_joint 1.258741e-05

Joint ci ratio: 5.285693e-01	ci left: 9.434075e-06	ci right 1.638562e-05	k: 54	n:4300000
Cons ci ratio: 1.768022e-03	ci left: 5.329397e-01	ci right 5.338830e-01	k: 2293669	n:4300000
KS ci ratio: 5.543684e-01	ci left: 8.430353e-06	ci right 1.506523e-05	k: 49	n:4300000
IFNA10   4300000 perm   7619 sec   (564 perm/sec)   p_kst 1.139535e-05   p_cons 5.334114e-01   p_joint 1.255814e-05

Joint ci ratio: 5.285693e-01	ci left: 9.412186e-06	ci right 1.634760e-05	k: 54	n:4310000
Cons ci ratio: 1.765960e-03	ci left: 5.329430e-01	ci right 5.338852e-01	k: 2299015	n:4310000
KS ci ratio: 5.543684e-01	ci left: 8.410793e-06	ci right 1.503027e-05	k: 49	n:4310000
IFNA10   4310000 perm   7653 sec   (563 perm/sec)   p_kst 1.136891e-05   p_cons 5.334142e-01   p_joint 1.252900e-05

Joint ci ratio: 5.285693e-01	ci left: 9.390398e-06	ci right 1.630976e-05	k: 54	n:4320000
Cons ci ratio: 1.763928e-03	ci left: 5.329398e-01	ci right 5.338810e-01	k: 2304333	n:4320000
KS ci ratio: 5.543684e-01	ci left: 8.391324e-06	ci right 1.499548e-05	k: 49	n:4320000
IFNA10   4320000 perm   7686 sec   (562 perm/sec)   p_kst 1.134259e-05   p_cons 5.334104e-01   p_joint 1.250000e-05

Joint ci ratio: 5.285693e-01	ci left: 9.368711e-06	ci right 1.627209e-05	k: 54	n:4330000
Cons ci ratio: 1.761902e-03	ci left: 5.329369e-01	ci right 5.338769e-01	k: 2309652	n:4330000
KS ci ratio: 5.543685e-01	ci left: 8.371944e-06	ci right 1.496085e-05	k: 49	n:4330000
IFNA10   4330000 perm   7720 sec   (561 perm/sec)   p_kst 1.131640e-05   p_cons 5.334069e-01   p_joint 1.247113e-05

Joint ci ratio: 5.238286e-01	ci left: 9.546909e-06	ci right 1.649537e-05	k: 55	n:4340000
Cons ci ratio: 1.759839e-03	ci left: 5.329466e-01	ci right 5.338856e-01	k: 2315026	n:4340000
KS ci ratio: 5.543685e-01	ci left: 8.352654e-06	ci right 1.492638e-05	k: 49	n:4340000
IFNA10   4340000 perm   7753 sec   (560 perm/sec)   p_kst 1.129032e-05   p_cons 5.334161e-01   p_joint 1.267281e-05

Joint ci ratio: 5.238286e-01	ci left: 9.524962e-06	ci right 1.645745e-05	k: 55	n:4350000
Cons ci ratio: 1.757782e-03	ci left: 5.329566e-01	ci right 5.338944e-01	k: 2320401	n:4350000
KS ci ratio: 5.543685e-01	ci left: 8.333453e-06	ci right 1.489206e-05	k: 49	n:4350000
IFNA10   4350000 perm   7787 sec   (559 perm/sec)   p_kst 1.126437e-05   p_cons 5.334255e-01   p_joint 1.264368e-05

Joint ci ratio: 5.103370e-01	ci left: 1.010135e-05	ci right 1.719686e-05	k: 58	n:4360000
Cons ci ratio: 1.755797e-03	ci left: 5.329479e-01	ci right 5.338847e-01	k: 2325695	n:4360000
KS ci ratio: 5.384501e-01	ci left: 8.907372e-06	ci right 1.564013e-05	k: 52	n:4360000
IFNA10   4360000 perm   7821 sec   (557 perm/sec)   p_kst 1.192661e-05   p_cons 5.334163e-01   p_joint 1.330275e-05

Joint ci ratio: 5.019010e-01	ci left: 1.047743e-05	ci right 1.767317e-05	k: 60	n:4370000
Cons ci ratio: 1.753794e-03	ci left: 5.329465e-01	ci right 5.338822e-01	k: 2331021	n:4370000
KS ci ratio: 5.334411e-01	ci left: 9.084827e-06	ci right 1.586388e-05	k: 53	n:4370000
IFNA10   4370000 perm   7854 sec   (556 perm/sec)   p_kst 1.212815e-05   p_cons 5.334144e-01   p_joint 1.372998e-05

Joint ci ratio: 5.019010e-01	ci left: 1.045351e-05	ci right 1.763282e-05	k: 60	n:4380000
Cons ci ratio: 1.751766e-03	ci left: 5.329541e-01	ci right 5.338888e-01	k: 2336386	n:4380000
KS ci ratio: 5.334411e-01	ci left: 9.064085e-06	ci right 1.582767e-05	k: 53	n:4380000
IFNA10   4380000 perm   7888 sec   (555 perm/sec)   p_kst 1.210046e-05   p_cons 5.334215e-01   p_joint 1.369863e-05

Joint ci ratio: 5.019010e-01	ci left: 1.042970e-05	ci right 1.759265e-05	k: 60	n:4390000
Cons ci ratio: 1.749817e-03	ci left: 5.329412e-01	ci right 5.338747e-01	k: 2341661	n:4390000
KS ci ratio: 5.334411e-01	ci left: 9.043438e-06	ci right 1.579161e-05	k: 53	n:4390000
IFNA10   4390000 perm   7922 sec   (554 perm/sec)   p_kst 1.207289e-05   p_cons 5.334080e-01   p_joint 1.366743e-05

Joint ci ratio: 5.019010e-01	ci left: 1.040600e-05	ci right 1.755267e-05	k: 60	n:4400000
Cons ci ratio: 1.747775e-03	ci left: 5.329567e-01	ci right 5.338892e-01	k: 2347061	n:4400000
KS ci ratio: 5.334411e-01	ci left: 9.022885e-06	ci right 1.575572e-05	k: 53	n:4400000
IFNA10   4400000 perm   7957 sec   (553 perm/sec)   p_kst 1.204545e-05   p_cons 5.334230e-01   p_joint 1.363636e-05

Joint ci ratio: 4.978369e-01	ci left: 1.058055e-05	ci right 1.776800e-05	k: 61	n:4410000
Cons ci ratio: 1.745793e-03	ci left: 5.329569e-01	ci right 5.338884e-01	k: 2352394	n:4410000
KS ci ratio: 5.285693e-01	ci left: 9.198757e-06	ci right 1.597691e-05	k: 54	n:4410000
IFNA10   4410000 perm   7992 sec   (552 perm/sec)   p_kst 1.224490e-05   p_cons 5.334227e-01   p_joint 1.383220e-05

Joint ci ratio: 4.978369e-01	ci left: 1.055661e-05	ci right 1.772781e-05	k: 61	n:4420000
Cons ci ratio: 1.743783e-03	ci left: 5.329671e-01	ci right 5.338975e-01	k: 2357771	n:4420000
KS ci ratio: 5.285693e-01	ci left: 9.177945e-06	ci right 1.594076e-05	k: 54	n:4420000
IFNA10   4420000 perm   8026 sec   (551 perm/sec)   p_kst 1.221719e-05   p_cons 5.334324e-01   p_joint 1.380090e-05

Joint ci ratio: 4.978370e-01	ci left: 1.053278e-05	ci right 1.768779e-05	k: 61	n:4430000
Cons ci ratio: 1.741787e-03	ci left: 5.329753e-01	ci right 5.339046e-01	k: 2363139	n:4430000
KS ci ratio: 5.285694e-01	ci left: 9.157228e-06	ci right 1.590478e-05	k: 54	n:4430000
IFNA10   4430000 perm   8060 sec   (550 perm/sec)   p_kst 1.218962e-05   p_cons 5.334400e-01   p_joint 1.376975e-05

Joint ci ratio: 4.978370e-01	ci left: 1.050906e-05	ci right 1.764795e-05	k: 61	n:4440000
Cons ci ratio: 1.739845e-03	ci left: 5.329698e-01	ci right 5.338981e-01	k: 2368447	n:4440000
KS ci ratio: 5.285694e-01	ci left: 9.136603e-06	ci right 1.586895e-05	k: 54	n:4440000
IFNA10   4440000 perm   8095 sec   (549 perm/sec)   p_kst 1.216216e-05   p_cons 5.334340e-01   p_joint 1.373874e-05

Joint ci ratio: 4.978370e-01	ci left: 1.048545e-05	ci right 1.760829e-05	k: 61	n:4450000
Cons ci ratio: 1.737867e-03	ci left: 5.329768e-01	ci right 5.339041e-01	k: 2373810	n:4450000
KS ci ratio: 5.285694e-01	ci left: 9.116072e-06	ci right 1.583329e-05	k: 54	n:4450000
IFNA10   4450000 perm   8129 sec   (547 perm/sec)   p_kst 1.213483e-05   p_cons 5.334404e-01   p_joint 1.370787e-05

Joint ci ratio: 4.978370e-01	ci left: 1.046194e-05	ci right 1.756881e-05	k: 61	n:4460000
Cons ci ratio: 1.735875e-03	ci left: 5.329896e-01	ci right 5.339158e-01	k: 2379199	n:4460000
KS ci ratio: 5.285694e-01	ci left: 9.095632e-06	ci right 1.579779e-05	k: 54	n:4460000
IFNA10   4460000 perm   8164 sec   (546 perm/sec)   p_kst 1.210762e-05   p_cons 5.334527e-01   p_joint 1.367713e-05

Joint ci ratio: 4.978370e-01	ci left: 1.043853e-05	ci right 1.752951e-05	k: 61	n:4470000
Cons ci ratio: 1.733936e-03	ci left: 5.329888e-01	ci right 5.339140e-01	k: 2384528	n:4470000
KS ci ratio: 5.285694e-01	ci left: 9.075284e-06	ci right 1.576245e-05	k: 54	n:4470000
IFNA10   4470000 perm   8198 sec   (545 perm/sec)   p_kst 1.208054e-05   p_cons 5.334515e-01   p_joint 1.364653e-05

Joint ci ratio: 4.938701e-01	ci left: 1.061052e-05	ci right 1.774131e-05	k: 62	n:4480000
Cons ci ratio: 1.732023e-03	ci left: 5.329828e-01	ci right 5.339069e-01	k: 2389833	n:4480000
KS ci ratio: 5.238287e-01	ci left: 9.248568e-06	ci right 1.597989e-05	k: 55	n:4480000
IFNA10   4480000 perm   8233 sec   (544 perm/sec)   p_kst 1.227679e-05   p_cons 5.334449e-01   p_joint 1.383929e-05

Joint ci ratio: 4.938701e-01	ci left: 1.058689e-05	ci right 1.770179e-05	k: 62	n:4490000
Cons ci ratio: 1.730081e-03	ci left: 5.329868e-01	ci right 5.339099e-01	k: 2395183	n:4490000
KS ci ratio: 5.238287e-01	ci left: 9.227970e-06	ci right 1.594430e-05	k: 55	n:4490000
IFNA10   4490000 perm   8267 sec   (543 perm/sec)   p_kst 1.224944e-05   p_cons 5.334483e-01   p_joint 1.380846e-05

Joint ci ratio: 4.938701e-01	ci left: 1.056336e-05	ci right 1.766245e-05	k: 62	n:4500000
Cons ci ratio: 1.728160e-03	ci left: 5.329867e-01	ci right 5.339088e-01	k: 2400515	n:4500000
KS ci ratio: 5.238287e-01	ci left: 9.207463e-06	ci right 1.590887e-05	k: 55	n:4500000
IFNA10   4500000 perm   8302 sec   (542 perm/sec)   p_kst 1.222222e-05   p_cons 5.334478e-01   p_joint 1.377778e-05

Joint ci ratio: 4.938701e-01	ci left: 1.053994e-05	ci right 1.762329e-05	k: 62	n:4510000
Cons ci ratio: 1.726185e-03	ci left: 5.330037e-01	ci right 5.339248e-01	k: 2405924	n:4510000
KS ci ratio: 5.238287e-01	ci left: 9.187048e-06	ci right 1.587360e-05	k: 55	n:4510000
IFNA10   4510000 perm   8336 sec   (541 perm/sec)   p_kst 1.219512e-05   p_cons 5.334643e-01   p_joint 1.374723e-05

Joint ci ratio: 4.938701e-01	ci left: 1.051662e-05	ci right 1.758430e-05	k: 62	n:4520000
Cons ci ratio: 1.724222e-03	ci left: 5.330196e-01	ci right 5.339396e-01	k: 2411328	n:4520000
KS ci ratio: 5.238287e-01	ci left: 9.166722e-06	ci right 1.583848e-05	k: 55	n:4520000
IFNA10   4520000 perm   8371 sec   (540 perm/sec)   p_kst 1.216814e-05   p_cons 5.334796e-01   p_joint 1.371681e-05

Joint ci ratio: 4.938701e-01	ci left: 1.049340e-05	ci right 1.754549e-05	k: 62	n:4530000
Cons ci ratio: 1.722366e-03	ci left: 5.330060e-01	ci right 5.339251e-01	k: 2416599	n:4530000
KS ci ratio: 5.238287e-01	ci left: 9.146487e-06	ci right 1.580352e-05	k: 55	n:4530000
IFNA10   4530000 perm   8405 sec   (539 perm/sec)   p_kst 1.214128e-05   p_cons 5.334656e-01   p_joint 1.368653e-05

Joint ci ratio: 4.938701e-01	ci left: 1.047029e-05	ci right 1.750684e-05	k: 62	n:4540000
Cons ci ratio: 1.720446e-03	ci left: 5.330130e-01	ci right 5.339310e-01	k: 2421963	n:4540000
KS ci ratio: 5.238287e-01	ci left: 9.126340e-06	ci right 1.576871e-05	k: 55	n:4540000
IFNA10   4540000 perm   8440 sec   (538 perm/sec)   p_kst 1.211454e-05   p_cons 5.334720e-01   p_joint 1.365639e-05

Joint ci ratio: 4.938701e-01	ci left: 1.044728e-05	ci right 1.746836e-05	k: 62	n:4550000
Cons ci ratio: 1.718571e-03	ci left: 5.330087e-01	ci right 5.339257e-01	k: 2427276	n:4550000
KS ci ratio: 5.238288e-01	ci left: 9.106282e-06	ci right 1.573405e-05	k: 55	n:4550000
IFNA10   4550000 perm   8474 sec   (537 perm/sec)   p_kst 1.208791e-05   p_cons 5.334673e-01   p_joint 1.362637e-05

Joint ci ratio: 4.899965e-01	ci left: 1.061645e-05	ci right 1.767636e-05	k: 63	n:4560000
Cons ci ratio: 1.716689e-03	ci left: 5.330082e-01	ci right 5.339242e-01	k: 2432606	n:4560000
KS ci ratio: 5.192134e-01	ci left: 9.276723e-06	ci right 1.594748e-05	k: 56	n:4560000
IFNA10   4560000 perm   8509 sec   (536 perm/sec)   p_kst 1.228070e-05   p_cons 5.334662e-01   p_joint 1.381579e-05

Joint ci ratio: 4.899965e-01	ci left: 1.059322e-05	ci right 1.763768e-05	k: 63	n:4570000
Cons ci ratio: 1.714806e-03	ci left: 5.330097e-01	ci right 5.339247e-01	k: 2437945	n:4570000
KS ci ratio: 5.192134e-01	ci left: 9.256424e-06	ci right 1.591259e-05	k: 56	n:4570000
IFNA10   4570000 perm   8544 sec   (535 perm/sec)   p_kst 1.225383e-05   p_cons 5.334672e-01   p_joint 1.378556e-05

Joint ci ratio: 4.899965e-01	ci left: 1.057009e-05	ci right 1.759917e-05	k: 63	n:4580000
Cons ci ratio: 1.712910e-03	ci left: 5.330170e-01	ci right 5.339310e-01	k: 2443311	n:4580000
KS ci ratio: 5.192134e-01	ci left: 9.236213e-06	ci right 1.587784e-05	k: 56	n:4580000
IFNA10   4580000 perm   8579 sec   (534 perm/sec)   p_kst 1.222707e-05   p_cons 5.334740e-01   p_joint 1.375546e-05

Joint ci ratio: 4.899965e-01	ci left: 1.054706e-05	ci right 1.756083e-05	k: 63	n:4590000
Cons ci ratio: 1.711094e-03	ci left: 5.330025e-01	ci right 5.339155e-01	k: 2448577	n:4590000
KS ci ratio: 5.192134e-01	ci left: 9.216091e-06	ci right 1.584325e-05	k: 56	n:4590000
IFNA10   4590000 perm   8615 sec   (533 perm/sec)   p_kst 1.220044e-05   p_cons 5.334590e-01   p_joint 1.372549e-05

Joint ci ratio: 4.899965e-01	ci left: 1.052413e-05	ci right 1.752266e-05	k: 63	n:4600000
Cons ci ratio: 1.709270e-03	ci left: 5.329925e-01	ci right 5.339045e-01	k: 2453863	n:4600000
KS ci ratio: 5.192134e-01	ci left: 9.196056e-06	ci right 1.580881e-05	k: 56	n:4600000
IFNA10   4600000 perm   8650 sec   (532 perm/sec)   p_kst 1.217391e-05   p_cons 5.334485e-01   p_joint 1.369565e-05

Joint ci ratio: 4.899965e-01	ci left: 1.050130e-05	ci right 1.748464e-05	k: 63	n:4610000
Cons ci ratio: 1.707368e-03	ci left: 5.330067e-01	ci right 5.339177e-01	k: 2459261	n:4610000
KS ci ratio: 5.192134e-01	ci left: 9.176108e-06	ci right 1.577452e-05	k: 56	n:4610000
IFNA10   4610000 perm   8687 sec   (531 perm/sec)   p_kst 1.214751e-05   p_cons 5.334623e-01   p_joint 1.366594e-05

Joint ci ratio: 4.899966e-01	ci left: 1.047857e-05	ci right 1.744680e-05	k: 63	n:4620000
Cons ci ratio: 1.705539e-03	ci left: 5.330012e-01	ci right 5.339113e-01	k: 2464568	n:4620000
KS ci ratio: 5.192134e-01	ci left: 9.156246e-06	ci right 1.574037e-05	k: 56	n:4620000
IFNA10   4620000 perm   8723 sec   (530 perm/sec)   p_kst 1.212121e-05   p_cons 5.334563e-01   p_joint 1.363636e-05

Joint ci ratio: 4.899966e-01	ci left: 1.045594e-05	ci right 1.740912e-05	k: 63	n:4630000
Cons ci ratio: 1.703661e-03	ci left: 5.330122e-01	ci right 5.339212e-01	k: 2469951	n:4630000
KS ci ratio: 5.192134e-01	ci left: 9.136470e-06	ci right 1.570638e-05	k: 56	n:4630000
IFNA10   4630000 perm   8759 sec   (529 perm/sec)   p_kst 1.209503e-05   p_cons 5.334667e-01   p_joint 1.360691e-05

Joint ci ratio: 4.899966e-01	ci left: 1.043341e-05	ci right 1.737160e-05	k: 63	n:4640000
Cons ci ratio: 1.701821e-03	ci left: 5.330136e-01	ci right 5.339217e-01	k: 2475290	n:4640000
KS ci ratio: 5.192134e-01	ci left: 9.116779e-06	ci right 1.567253e-05	k: 56	n:4640000
IFNA10   4640000 perm   8795 sec   (528 perm/sec)   p_kst 1.206897e-05   p_cons 5.334677e-01   p_joint 1.357759e-05

Joint ci ratio: 4.899966e-01	ci left: 1.041097e-05	ci right 1.733424e-05	k: 63	n:4650000
Cons ci ratio: 1.699992e-03	ci left: 5.330135e-01	ci right 5.339206e-01	k: 2480622	n:4650000
KS ci ratio: 5.192134e-01	ci left: 9.097173e-06	ci right 1.563882e-05	k: 56	n:4650000
IFNA10   4650000 perm   8830 sec   (527 perm/sec)   p_kst 1.204301e-05   p_cons 5.334671e-01   p_joint 1.354839e-05

Joint ci ratio: 4.899966e-01	ci left: 1.038863e-05	ci right 1.729704e-05	k: 63	n:4660000
Cons ci ratio: 1.698163e-03	ci left: 5.330149e-01	ci right 5.339211e-01	k: 2485961	n:4660000
KS ci ratio: 5.192135e-01	ci left: 9.077651e-06	ci right 1.560526e-05	k: 56	n:4660000
IFNA10   4660000 perm   8867 sec   (526 perm/sec)   p_kst 1.201717e-05   p_cons 5.334680e-01   p_joint 1.351931e-05

Joint ci ratio: 4.899966e-01	ci left: 1.036638e-05	ci right 1.726000e-05	k: 63	n:4670000
Cons ci ratio: 1.696371e-03	ci left: 5.330076e-01	ci right 5.339127e-01	k: 2491259	n:4670000
KS ci ratio: 5.192135e-01	ci left: 9.058213e-06	ci right 1.557185e-05	k: 56	n:4670000
IFNA10   4670000 perm   8903 sec   (525 perm/sec)   p_kst 1.199143e-05   p_cons 5.334602e-01   p_joint 1.349036e-05

Joint ci ratio: 4.899966e-01	ci left: 1.034423e-05	ci right 1.722312e-05	k: 63	n:4680000
Cons ci ratio: 1.694499e-03	ci left: 5.330255e-01	ci right 5.339296e-01	k: 2496675	n:4680000
KS ci ratio: 5.192135e-01	ci left: 9.038858e-06	ci right 1.553857e-05	k: 56	n:4680000
IFNA10   4680000 perm   8939 sec   (524 perm/sec)   p_kst 1.196581e-05   p_cons 5.334776e-01   p_joint 1.346154e-05

Joint ci ratio: 4.899966e-01	ci left: 1.032217e-05	ci right 1.718640e-05	k: 63	n:4690000
Cons ci ratio: 1.692684e-03	ci left: 5.330279e-01	ci right 5.339311e-01	k: 2502019	n:4690000
KS ci ratio: 5.192135e-01	ci left: 9.019585e-06	ci right 1.550544e-05	k: 56	n:4690000
IFNA10   4690000 perm   8975 sec   (523 perm/sec)   p_kst 1.194030e-05   p_cons 5.334795e-01   p_joint 1.343284e-05

Joint ci ratio: 4.899966e-01	ci left: 1.030021e-05	ci right 1.714983e-05	k: 63	n:4700000
Cons ci ratio: 1.690916e-03	ci left: 5.330186e-01	ci right 5.339209e-01	k: 2507308	n:4700000
KS ci ratio: 5.192135e-01	ci left: 9.000395e-06	ci right 1.547245e-05	k: 56	n:4700000
IFNA10   4700000 perm   9012 sec   (522 perm/sec)   p_kst 1.191489e-05   p_cons 5.334698e-01   p_joint 1.340426e-05

Joint ci ratio: 4.899966e-01	ci left: 1.027834e-05	ci right 1.711342e-05	k: 63	n:4710000
Cons ci ratio: 1.689130e-03	ci left: 5.330160e-01	ci right 5.339173e-01	k: 2512628	n:4710000
KS ci ratio: 5.192135e-01	ci left: 8.981286e-06	ci right 1.543960e-05	k: 56	n:4710000
IFNA10   4710000 perm   9048 sec   (521 perm/sec)   p_kst 1.188960e-05   p_cons 5.334667e-01   p_joint 1.337580e-05

Joint ci ratio: 4.899966e-01	ci left: 1.025657e-05	ci right 1.707716e-05	k: 63	n:4720000
Cons ci ratio: 1.687313e-03	ci left: 5.330246e-01	ci right 5.339249e-01	k: 2518001	n:4720000
KS ci ratio: 5.192135e-01	ci left: 8.962257e-06	ci right 1.540689e-05	k: 56	n:4720000
IFNA10   4720000 perm   9085 sec   (520 perm/sec)   p_kst 1.186441e-05   p_cons 5.334748e-01   p_joint 1.334746e-05

Joint ci ratio: 4.899966e-01	ci left: 1.023488e-05	ci right 1.704106e-05	k: 63	n:4730000
Cons ci ratio: 1.685536e-03	ci left: 5.330228e-01	ci right 5.339222e-01	k: 2523325	n:4730000
KS ci ratio: 5.192135e-01	ci left: 8.943310e-06	ci right 1.537432e-05	k: 56	n:4730000
IFNA10   4730000 perm   9122 sec   (519 perm/sec)   p_kst 1.183932e-05   p_cons 5.334725e-01   p_joint 1.331924e-05

Joint ci ratio: 4.899966e-01	ci left: 1.021329e-05	ci right 1.700511e-05	k: 63	n:4740000
Cons ci ratio: 1.683769e-03	ci left: 5.330195e-01	ci right 5.339180e-01	k: 2528642	n:4740000
KS ci ratio: 5.192135e-01	ci left: 8.924442e-06	ci right 1.534188e-05	k: 56	n:4740000
IFNA10   4740000 perm   9159 sec   (518 perm/sec)   p_kst 1.181435e-05   p_cons 5.334688e-01   p_joint 1.329114e-05

Joint ci ratio: 4.899966e-01	ci left: 1.019179e-05	ci right 1.696931e-05	k: 63	n:4750000
Cons ci ratio: 1.681970e-03	ci left: 5.330279e-01	ci right 5.339254e-01	k: 2534014	n:4750000
KS ci ratio: 5.192135e-01	ci left: 8.905654e-06	ci right 1.530959e-05	k: 56	n:4750000
IFNA10   4750000 perm   9196 sec   (517 perm/sec)   p_kst 1.178947e-05   p_cons 5.334766e-01   p_joint 1.326316e-05

Joint ci ratio: 4.899967e-01	ci left: 1.017038e-05	ci right 1.693366e-05	k: 63	n:4760000
Cons ci ratio: 1.680276e-03	ci left: 5.330063e-01	ci right 5.339029e-01	k: 2539244	n:4760000
KS ci ratio: 5.192135e-01	ci left: 8.886944e-06	ci right 1.527742e-05	k: 56	n:4760000
IFNA10   4760000 perm   9232 sec   (516 perm/sec)   p_kst 1.176471e-05   p_cons 5.334546e-01   p_joint 1.323529e-05

Joint ci ratio: 4.899967e-01	ci left: 1.014906e-05	ci right 1.689816e-05	k: 63	n:4770000
Cons ci ratio: 1.678529e-03	ci left: 5.330023e-01	ci right 5.338979e-01	k: 2544557	n:4770000
KS ci ratio: 5.192135e-01	ci left: 8.868313e-06	ci right 1.524539e-05	k: 56	n:4770000
IFNA10   4770000 perm   9268 sec   (515 perm/sec)   p_kst 1.174004e-05   p_cons 5.334501e-01   p_joint 1.320755e-05

Joint ci ratio: 4.899967e-01	ci left: 1.012782e-05	ci right 1.686281e-05	k: 63	n:4780000
Cons ci ratio: 1.676789e-03	ci left: 5.329978e-01	ci right 5.338925e-01	k: 2549868	n:4780000
KS ci ratio: 5.192135e-01	ci left: 8.849760e-06	ci right 1.521350e-05	k: 56	n:4780000
IFNA10   4780000 perm   9305 sec   (514 perm/sec)   p_kst 1.171548e-05   p_cons 5.334452e-01   p_joint 1.317992e-05

Joint ci ratio: 4.899967e-01	ci left: 1.010668e-05	ci right 1.682760e-05	k: 63	n:4790000
Cons ci ratio: 1.675034e-03	ci left: 5.329995e-01	ci right 5.338932e-01	k: 2555208	n:4790000
KS ci ratio: 5.192135e-01	ci left: 8.831285e-06	ci right 1.518174e-05	k: 56	n:4790000
IFNA10   4790000 perm   9343 sec   (513 perm/sec)   p_kst 1.169102e-05   p_cons 5.334463e-01   p_joint 1.315240e-05

Joint ci ratio: 4.899967e-01	ci left: 1.008562e-05	ci right 1.679255e-05	k: 63	n:4800000
Cons ci ratio: 1.673324e-03	ci left: 5.329892e-01	ci right 5.338820e-01	k: 2560491	n:4800000
KS ci ratio: 5.192135e-01	ci left: 8.812886e-06	ci right 1.515011e-05	k: 56	n:4800000
IFNA10   4800000 perm   9381 sec   (512 perm/sec)   p_kst 1.166667e-05   p_cons 5.334356e-01   p_joint 1.312500e-05

Joint ci ratio: 4.899967e-01	ci left: 1.006466e-05	ci right 1.675763e-05	k: 63	n:4810000
Cons ci ratio: 1.671532e-03	ci left: 5.330052e-01	ci right 5.338971e-01	k: 2565900	n:4810000
KS ci ratio: 5.192136e-01	ci left: 8.794564e-06	ci right 1.511861e-05	k: 56	n:4810000
IFNA10   4810000 perm   9418 sec   (511 perm/sec)   p_kst 1.164241e-05   p_cons 5.334511e-01   p_joint 1.309771e-05

Joint ci ratio: 4.899967e-01	ci left: 1.004378e-05	ci right 1.672287e-05	k: 63	n:4820000
Cons ci ratio: 1.669832e-03	ci left: 5.329952e-01	ci right 5.338861e-01	k: 2571184	n:4820000
KS ci ratio: 5.192136e-01	ci left: 8.776318e-06	ci right 1.508725e-05	k: 56	n:4820000
IFNA10   4820000 perm   9455 sec   (510 perm/sec)   p_kst 1.161826e-05   p_cons 5.334407e-01   p_joint 1.307054e-05

Joint ci ratio: 4.899967e-01	ci left: 1.002298e-05	ci right 1.668824e-05	k: 63	n:4830000
Cons ci ratio: 1.668091e-03	ci left: 5.329991e-01	ci right 5.338891e-01	k: 2576535	n:4830000
KS ci ratio: 5.192136e-01	ci left: 8.758148e-06	ci right 1.505601e-05	k: 56	n:4830000
IFNA10   4830000 perm   9492 sec   (509 perm/sec)   p_kst 1.159420e-05   p_cons 5.334441e-01   p_joint 1.304348e-05

Joint ci ratio: 4.899967e-01	ci left: 1.000227e-05	ci right 1.665376e-05	k: 63	n:4840000
Cons ci ratio: 1.666386e-03	ci left: 5.329939e-01	ci right 5.338830e-01	k: 2581842	n:4840000
KS ci ratio: 5.192136e-01	ci left: 8.740052e-06	ci right 1.502490e-05	k: 56	n:4840000
IFNA10   4840000 perm   9530 sec   (508 perm/sec)   p_kst 1.157025e-05   p_cons 5.334384e-01   p_joint 1.301653e-05

Joint ci ratio: 4.899967e-01	ci left: 9.981649e-06	ci right 1.661943e-05	k: 63	n:4850000
Cons ci ratio: 1.664658e-03	ci left: 5.329969e-01	ci right 5.338851e-01	k: 2587189	n:4850000
KS ci ratio: 5.192136e-01	ci left: 8.722032e-06	ci right 1.499392e-05	k: 56	n:4850000
IFNA10   4850000 perm   9567 sec   (507 perm/sec)   p_kst 1.154639e-05   p_cons 5.334410e-01   p_joint 1.298969e-05

Joint ci ratio: 4.899967e-01	ci left: 9.961111e-06	ci right 1.658523e-05	k: 63	n:4860000
Cons ci ratio: 1.662945e-03	ci left: 5.329973e-01	ci right 5.338846e-01	k: 2592523	n:4860000
KS ci ratio: 5.192136e-01	ci left: 8.704085e-06	ci right 1.496307e-05	k: 56	n:4860000
IFNA10   4860000 perm   9605 sec   (506 perm/sec)   p_kst 1.152263e-05   p_cons 5.334409e-01   p_joint 1.296296e-05

Joint ci ratio: 4.899967e-01	ci left: 9.940657e-06	ci right 1.655117e-05	k: 63	n:4870000
Cons ci ratio: 1.661257e-03	ci left: 5.329917e-01	ci right 5.338781e-01	k: 2597828	n:4870000
KS ci ratio: 5.192136e-01	ci left: 8.686212e-06	ci right 1.493235e-05	k: 56	n:4870000
IFNA10   4870000 perm   9643 sec   (505 perm/sec)   p_kst 1.149897e-05   p_cons 5.334349e-01   p_joint 1.293634e-05

Joint ci ratio: 4.899967e-01	ci left: 9.920286e-06	ci right 1.651726e-05	k: 63	n:4880000
Cons ci ratio: 1.659562e-03	ci left: 5.329898e-01	ci right 5.338753e-01	k: 2603151	n:4880000
KS ci ratio: 5.192136e-01	ci left: 8.668413e-06	ci right 1.490175e-05	k: 56	n:4880000
IFNA10   4880000 perm   9681 sec   (504 perm/sec)   p_kst 1.147541e-05   p_cons 5.334326e-01   p_joint 1.290984e-05

Joint ci ratio: 4.899967e-01	ci left: 9.899999e-06	ci right 1.648348e-05	k: 63	n:4890000
Cons ci ratio: 1.657903e-03	ci left: 5.329788e-01	ci right 5.338633e-01	k: 2608429	n:4890000
KS ci ratio: 5.192136e-01	ci left: 8.650686e-06	ci right 1.487127e-05	k: 56	n:4890000
IFNA10   4890000 perm   9718 sec   (503 perm/sec)   p_kst 1.145194e-05   p_cons 5.334211e-01   p_joint 1.288344e-05

Joint ci ratio: 4.899967e-01	ci left: 9.879795e-06	ci right 1.644984e-05	k: 63	n:4900000
Cons ci ratio: 1.656176e-03	ci left: 5.329894e-01	ci right 5.338730e-01	k: 2613813	n:4900000
KS ci ratio: 5.192136e-01	ci left: 8.633031e-06	ci right 1.484093e-05	k: 56	n:4900000
IFNA10   4900000 perm   9755 sec   (502 perm/sec)   p_kst 1.142857e-05   p_cons 5.334312e-01   p_joint 1.285714e-05

Joint ci ratio: 4.862129e-01	ci left: 1.003826e-05	ci right 1.664489e-05	k: 64	n:4910000
Cons ci ratio: 1.654531e-03	ci left: 5.329771e-01	ci right 5.338599e-01	k: 2619085	n:4910000
KS ci ratio: 5.147181e-01	ci left: 8.792525e-06	ci right 1.504073e-05	k: 57	n:4910000
IFNA10   4910000 perm   9794 sec   (501 perm/sec)   p_kst 1.160896e-05   p_cons 5.334185e-01   p_joint 1.303462e-05

Joint ci ratio: 4.862129e-01	ci left: 1.001786e-05	ci right 1.661106e-05	k: 64	n:4920000
Cons ci ratio: 1.652826e-03	ci left: 5.329845e-01	ci right 5.338663e-01	k: 2624453	n:4920000
KS ci ratio: 5.147181e-01	ci left: 8.774654e-06	ci right 1.501016e-05	k: 57	n:4920000
IFNA10   4920000 perm   9832 sec   (500 perm/sec)   p_kst 1.158537e-05   p_cons 5.334254e-01   p_joint 1.300813e-05

Joint ci ratio: 4.862129e-01	ci left: 9.997539e-06	ci right 1.657737e-05	k: 64	n:4930000
Cons ci ratio: 1.651150e-03	ci left: 5.329845e-01	ci right 5.338654e-01	k: 2629785	n:4930000
KS ci ratio: 5.147181e-01	ci left: 8.756856e-06	ci right 1.497971e-05	k: 57	n:4930000
IFNA10   4930000 perm   9870 sec   (499 perm/sec)   p_kst 1.156187e-05   p_cons 5.334249e-01   p_joint 1.298174e-05

Joint ci ratio: 4.825154e-01	ci left: 1.015500e-05	ci right 1.677079e-05	k: 65	n:4940000
Cons ci ratio: 1.649450e-03	ci left: 5.329934e-01	ci right 5.338734e-01	k: 2635161	n:4940000
KS ci ratio: 5.147181e-01	ci left: 8.739129e-06	ci right 1.494939e-05	k: 57	n:4940000
IFNA10   4940000 perm   9908 sec   (499 perm/sec)   p_kst 1.153846e-05   p_cons 5.334334e-01   p_joint 1.315789e-05

Joint ci ratio: 4.789009e-01	ci left: 1.031201e-05	ci right 1.696324e-05	k: 66	n:4950000
Cons ci ratio: 1.647778e-03	ci left: 5.329953e-01	ci right 5.338745e-01	k: 2640503	n:4950000
KS ci ratio: 5.103374e-01	ci left: 8.897351e-06	ci right 1.514714e-05	k: 58	n:4950000
IFNA10   4950000 perm   9947 sec   (498 perm/sec)   p_kst 1.171717e-05   p_cons 5.334349e-01   p_joint 1.333333e-05

Joint ci ratio: 4.789009e-01	ci left: 1.029122e-05	ci right 1.692904e-05	k: 66	n:4960000
Cons ci ratio: 1.646132e-03	ci left: 5.329911e-01	ci right 5.338694e-01	k: 2645814	n:4960000
KS ci ratio: 5.103374e-01	ci left: 8.879413e-06	ci right 1.511660e-05	k: 58	n:4960000
IFNA10   4960000 perm   9986 sec   (497 perm/sec)   p_kst 1.169355e-05   p_cons 5.334302e-01   p_joint 1.330645e-05

Joint ci ratio: 4.789009e-01	ci left: 1.027052e-05	ci right 1.689498e-05	k: 66	n:4970000
Cons ci ratio: 1.644426e-03	ci left: 5.330064e-01	ci right 5.338837e-01	k: 2651222	n:4970000
KS ci ratio: 5.103375e-01	ci left: 8.861547e-06	ci right 1.508618e-05	k: 58	n:4970000
IFNA10   4970000 perm   10025 sec   (496 perm/sec)   p_kst 1.167002e-05   p_cons 5.334451e-01   p_joint 1.327968e-05

Joint ci ratio: 4.789010e-01	ci left: 1.024989e-05	ci right 1.686105e-05	k: 66	n:4980000
Cons ci ratio: 1.642799e-03	ci left: 5.329991e-01	ci right 5.338756e-01	k: 2656518	n:4980000
KS ci ratio: 5.103375e-01	ci left: 8.843753e-06	ci right 1.505589e-05	k: 58	n:4980000
IFNA10   4980000 perm   10064 sec   (495 perm/sec)   p_kst 1.164659e-05   p_cons 5.334373e-01   p_joint 1.325301e-05

Joint ci ratio: 4.789010e-01	ci left: 1.022935e-05	ci right 1.682726e-05	k: 66	n:4990000
Cons ci ratio: 1.641119e-03	ci left: 5.330097e-01	ci right 5.338853e-01	k: 2661903	n:4990000
KS ci ratio: 5.103375e-01	ci left: 8.826030e-06	ci right 1.502572e-05	k: 58	n:4990000
IFNA10   4990000 perm   10102 sec   (494 perm/sec)   p_kst 1.162325e-05   p_cons 5.334475e-01   p_joint 1.322645e-05

Joint ci ratio: 4.789010e-01	ci left: 1.020889e-05	ci right 1.679361e-05	k: 66	n:5000000
Cons ci ratio: 1.639429e-03	ci left: 5.330248e-01	ci right 5.338996e-01	k: 2667311	n:5000000
KS ci ratio: 5.103375e-01	ci left: 8.808378e-06	ci right 1.499566e-05	k: 58	n:5000000
IFNA10   5000000 perm   10141 sec   (493 perm/sec)   p_kst 1.160000e-05   p_cons 5.334622e-01   p_joint 1.320000e-05

Outputting figure to mutsig2_images.part000000000083/IFNA10.3_574_5000000_1.16e-05_0.53346_1.32e-05.png
                gene_name: IFNA10
               theta_stop: 0.51 
                    nperm: 5000000 
                     p_ks: 1.16e-05 
        ci_ks_bounds_left: 8.81e-06 
       ci_ks_bounds_right: 1.50e-05 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.53 
                  p_joint: 1.32e-05 
     ci_joint_bounds_left: 1.02e-05 
    ci_joint_bounds_right: 1.68e-05 

Current progress: 52 percent done.
IFT88
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.509652e-02	ci left: 5.451948e-01	ci right 5.647731e-01	k: 5550	n:10000
Cons ci ratio: 6.589183e-02	ci left: 2.527095e-01	ci right 2.700297e-01	k: 2613	n:10000
KS ci ratio: 1.609321e-02	ci left: 8.487612e-01	ci right 8.626309e-01	k: 8558	n:10000
IFT88   10000 perm   2 sec   (6265 perm/sec)   p_kst 8.558000e-01   p_cons 2.613000e-01   p_joint 5.550000e-01

Outputting figure to mutsig2_images.part000000000083/IFT88.3_2606_10000_0.8558_0.2613_0.555.png
                gene_name: IFT88
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.56 

Current progress: 55 percent done.
IGF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.488330e-02	ci left: 2.586449e-01	ci right 2.760908e-01	k: 2673	n:10000
Cons ci ratio: 6.879415e-02	ci left: 2.365957e-01	ci right 2.535531e-01	k: 2450	n:10000
KS ci ratio: 5.942548e-02	ci left: 2.941004e-01	ci right 3.122144e-01	k: 3031	n:10000
IGF1   10000 perm   1 sec   (6778 perm/sec)   p_kst 3.031000e-01   p_cons 2.450000e-01   p_joint 2.673000e-01

Outputting figure to mutsig2_images.part000000000083/IGF1.3_687_10000_0.3031_0.245_0.2673.png
                gene_name: IGF1
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 57 percent done.
IGF2BP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.149978e-02	ci left: 2.799299e-01	ci right 2.977933e-01	k: 2888	n:10000
Cons ci ratio: 1.718632e-02	ci left: 8.314445e-01	ci right 8.459577e-01	k: 8388	n:10000
KS ci ratio: 6.907414e-02	ci left: 2.351136e-01	ci right 2.520360e-01	k: 2435	n:10000
IGF2BP1   10000 perm   2 sec   (6308 perm/sec)   p_kst 2.435000e-01   p_cons 8.388000e-01   p_joint 2.888000e-01

Outputting figure to mutsig2_images.part000000000083/IGF2BP1.3_1794_10000_0.2435_0.8388_0.2888.png
                gene_name: IGF2BP1
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 60 percent done.
IGF2BP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.698613e-02	ci left: 4.006365e-01	ci right 4.200158e-01	k: 4103	n:10000
Cons ci ratio: 5.479894e-02	ci left: 3.291243e-01	ci right 3.477699e-01	k: 3384	n:10000
KS ci ratio: 5.461592e-02	ci left: 3.306139e-01	ci right 3.492795e-01	k: 3399	n:10000
IGF2BP2   10000 perm   2 sec   (6281 perm/sec)   p_kst 3.399000e-01   p_cons 3.384000e-01   p_joint 4.103000e-01

Outputting figure to mutsig2_images.part000000000083/IGF2BP2.3_1864_10000_0.3399_0.3384_0.4103.png
                gene_name: IGF2BP2
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 62 percent done.
IFIT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.170407e-02	ci left: 5.948373e-01	ci right 6.141018e-01	k: 6045	n:10000
Cons ci ratio: 4.581216e-02	ci left: 4.128920e-01	ci right 4.323531e-01	k: 4226	n:10000
KS ci ratio: 1.162440e-01	ci left: 9.613473e-02	ci right 1.080982e-01	k: 1020	n:10000
IFIT2   10000 perm   1 sec   (6947 perm/sec)   p_kst 1.020000e-01   p_cons 4.226000e-01   p_joint 6.045000e-01

Joint ci ratio: 4.190127e-02	ci left: 2.979768e-01	ci right 3.107801e-01	k: 6087	n:20000
Cons ci ratio: 3.227784e-02	ci left: 4.175366e-01	ci right 4.312854e-01	k: 8488	n:20000
KS ci ratio: 8.237831e-02	ci left: 9.749509e-02	ci right 1.059211e-01	k: 2033	n:20000
IFIT2   20000 perm   3 sec   (6033 perm/sec)   p_kst 1.016500e-01   p_cons 4.244000e-01   p_joint 3.043500e-01

Outputting figure to mutsig2_images.part000000000083/IFIT2.2_1427_20000_0.10165_0.4244_0.30435.png
                gene_name: IFIT2
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.097 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 65 percent done.
IFNA14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.498839e-01	ci left: 9.148061e-04	ci right 2.597003e-03	k: 16	n:10000
Cons ci ratio: 5.146020e-02	ci left: 3.576425e-01	ci right 3.766349e-01	k: 3671	n:10000
KS ci ratio: 9.498839e-01	ci left: 9.148061e-04	ci right 2.597003e-03	k: 16	n:10000
IFNA14   10000 perm   1 sec   (7177 perm/sec)   p_kst 1.600000e-03   p_cons 3.671000e-01   p_joint 1.600000e-03

Joint ci ratio: 4.676974e-01	ci left: 2.685268e-03	ci right 4.364195e-03	k: 69	n:20000
Cons ci ratio: 3.584587e-02	ci left: 3.674373e-01	ci right 3.808993e-01	k: 7483	n:20000
KS ci ratio: 6.818042e-01	ci left: 1.094648e-03	ci right 2.257979e-03	k: 32	n:20000
IFNA14   20000 perm   3 sec   (6249 perm/sec)   p_kst 1.600000e-03   p_cons 3.741500e-01   p_joint 3.450000e-03

Joint ci ratio: 5.905189e-01	ci left: 1.037499e-03	ci right 1.930210e-03	k: 43	n:30000
Cons ci ratio: 2.918069e-02	ci left: 3.700824e-01	ci right 3.810751e-01	k: 11267	n:30000
KS ci ratio: 5.431258e-01	ci left: 1.266016e-03	ci right 2.234588e-03	k: 51	n:30000
IFNA14   30000 perm   5 sec   (5915 perm/sec)   p_kst 1.700000e-03   p_cons 3.755667e-01   p_joint 1.433333e-03

Joint ci ratio: 5.234587e-01	ci left: 1.036001e-03	ci right 1.789380e-03	k: 55	n:40000
Cons ci ratio: 2.513170e-02	ci left: 3.734192e-01	ci right 3.829484e-01	k: 15127	n:40000
KS ci ratio: 4.896017e-01	ci left: 1.210479e-03	ci right 2.014666e-03	k: 63	n:40000
IFNA14   40000 perm   7 sec   (5678 perm/sec)   p_kst 1.575000e-03   p_cons 3.781750e-01   p_joint 1.375000e-03

Joint ci ratio: 6.821524e-01	ci left: 4.377994e-04	ci right 9.033700e-04	k: 32	n:50000
Cons ci ratio: 2.256281e-02	ci left: 3.721706e-01	ci right 3.806837e-01	k: 18821	n:50000
KS ci ratio: 4.435018e-01	ci left: 1.215529e-03	ci right 1.924365e-03	k: 77	n:50000
IFNA14   50000 perm   9 sec   (5493 perm/sec)   p_kst 1.540000e-03   p_cons 3.764200e-01   p_joint 6.400000e-04

Joint ci ratio: 6.357013e-01	ci left: 4.342262e-04	ci right 8.498946e-04	k: 37	n:60000
Cons ci ratio: 2.061991e-02	ci left: 3.720222e-01	ci right 3.797898e-01	k: 22554	n:60000
KS ci ratio: 4.128908e-01	ci left: 1.191403e-03	ci right 1.825057e-03	k: 89	n:60000
IFNA14   60000 perm   11 sec   (5344 perm/sec)   p_kst 1.483333e-03   p_cons 3.759000e-01   p_joint 6.166667e-04

Joint ci ratio: 5.976065e-01	ci left: 4.324604e-04	ci right 8.109401e-04	k: 42	n:70000
Cons ci ratio: 1.905849e-02	ci left: 3.730942e-01	ci right 3.802875e-01	k: 26368	n:70000
KS ci ratio: 3.786683e-01	ci left: 1.239934e-03	ci right 1.831194e-03	k: 106	n:70000
IFNA14   70000 perm   13 sec   (5218 perm/sec)   p_kst 1.514286e-03   p_cons 3.766857e-01   p_joint 6.000000e-04

Joint ci ratio: 5.541950e-01	ci left: 4.531642e-04	ci right 8.096776e-04	k: 49	n:80000
Cons ci ratio: 1.783945e-02	ci left: 3.730161e-01	ci right 3.797429e-01	k: 30110	n:80000
KS ci ratio: 3.546272e-01	ci left: 1.255186e-03	ci right 1.806978e-03	k: 121	n:80000
IFNA14   80000 perm   16 sec   (5106 perm/sec)   p_kst 1.512500e-03   p_cons 3.763750e-01   p_joint 6.125000e-04

Joint ci ratio: 5.332814e-01	ci left: 4.411483e-04	ci right 7.702113e-04	k: 53	n:90000
Cons ci ratio: 1.679727e-02	ci left: 3.738211e-01	ci right 3.801646e-01	k: 33929	n:90000
KS ci ratio: 3.358813e-01	ci left: 1.257798e-03	ci right 1.775187e-03	k: 135	n:90000
IFNA14   90000 perm   18 sec   (5005 perm/sec)   p_kst 1.500000e-03   p_cons 3.769889e-01   p_joint 5.888889e-04

Joint ci ratio: 4.860557e-01	ci left: 4.929118e-04	ci right 8.171933e-04	k: 64	n:100000
Cons ci ratio: 1.593223e-02	ci left: 3.740747e-01	ci right 3.800924e-01	k: 37708	n:100000
KS ci ratio: 3.177107e-01	ci left: 1.278904e-03	ci right 1.770737e-03	k: 151	n:100000
IFNA14   100000 perm   20 sec   (4904 perm/sec)   p_kst 1.510000e-03   p_cons 3.770800e-01   p_joint 6.400000e-04

Joint ci ratio: 3.106501e-01	ci left: 1.221253e-03	ci right 1.678409e-03	k: 158	n:110000
Cons ci ratio: 1.516639e-02	ci left: 3.749699e-01	ci right 3.807093e-01	k: 41562	n:110000
KS ci ratio: 2.969380e-01	ci left: 1.347242e-03	ci right 1.825110e-03	k: 173	n:110000
IFNA14   110000 perm   23 sec   (4808 perm/sec)   p_kst 1.572727e-03   p_cons 3.778364e-01   p_joint 1.436364e-03

Joint ci ratio: 2.935972e-01	ci left: 1.265828e-03	ci right 1.708826e-03	k: 177	n:120000
Cons ci ratio: 1.451697e-02	ci left: 3.752137e-01	ci right 3.807088e-01	k: 45355	n:120000
KS ci ratio: 2.826740e-01	ci left: 1.374077e-03	ci right 1.833881e-03	k: 191	n:120000
IFNA14   120000 perm   25 sec   (4717 perm/sec)   p_kst 1.591667e-03   p_cons 3.779583e-01   p_joint 1.475000e-03

Joint ci ratio: 3.231321e-01	ci left: 9.483759e-04	ci right 1.320607e-03	k: 146	n:130000
Cons ci ratio: 1.394715e-02	ci left: 3.753323e-01	ci right 3.806116e-01	k: 49136	n:130000
KS ci ratio: 2.696438e-01	ci left: 1.404421e-03	ci right 1.849054e-03	k: 210	n:130000
IFNA14   130000 perm   28 sec   (4630 perm/sec)   p_kst 1.615385e-03   p_cons 3.779692e-01   p_joint 1.123077e-03

Joint ci ratio: 3.106985e-01	ci left: 9.595350e-04	ci right 1.318784e-03	k: 158	n:140000
Cons ci ratio: 1.342100e-02	ci left: 3.760868e-01	ci right 3.811754e-01	k: 53008	n:140000
KS ci ratio: 2.599676e-01	ci left: 1.410807e-03	ci right 1.838831e-03	k: 226	n:140000
IFNA14   140000 perm   31 sec   (4547 perm/sec)   p_kst 1.614286e-03   p_cons 3.786286e-01   p_joint 1.128571e-03

Joint ci ratio: 2.961503e-01	ci left: 9.941197e-04	ci right 1.345619e-03	k: 174	n:150000
Cons ci ratio: 1.297039e-02	ci left: 3.760113e-01	ci right 3.809267e-01	k: 56770	n:150000
KS ci ratio: 2.517830e-01	ci left: 1.410341e-03	ci right 1.822641e-03	k: 241	n:150000
IFNA14   150000 perm   34 sec   (4468 perm/sec)   p_kst 1.606667e-03   p_cons 3.784667e-01   p_joint 1.160000e-03

Joint ci ratio: 2.502470e-01	ci left: 1.339759e-03	ci right 1.728662e-03	k: 244	n:160000
Cons ci ratio: 1.256516e-02	ci left: 3.758417e-01	ci right 3.806002e-01	k: 60515	n:160000
KS ci ratio: 2.443257e-01	ci left: 1.410118e-03	ci right 1.808291e-03	k: 256	n:160000
IFNA14   160000 perm   36 sec   (4391 perm/sec)   p_kst 1.600000e-03   p_cons 3.782187e-01   p_joint 1.525000e-03

Joint ci ratio: 2.419910e-01	ci left: 1.354785e-03	ci right 1.733129e-03	k: 261	n:170000
Cons ci ratio: 1.219796e-02	ci left: 3.756061e-01	ci right 3.802216e-01	k: 64245	n:170000
KS ci ratio: 2.361929e-01	ci left: 1.426682e-03	ci right 1.814162e-03	k: 274	n:170000
IFNA14   170000 perm   39 sec   (4322 perm/sec)   p_kst 1.611765e-03   p_cons 3.779118e-01   p_joint 1.535294e-03

Joint ci ratio: 2.349237e-01	ci left: 1.363099e-03	ci right 1.731032e-03	k: 277	n:180000
Cons ci ratio: 1.187254e-02	ci left: 3.749490e-01	ci right 3.794327e-01	k: 67894	n:180000
KS ci ratio: 2.288217e-01	ci left: 1.441599e-03	ci right 1.819188e-03	k: 292	n:180000
IFNA14   180000 perm   42 sec   (4252 perm/sec)   p_kst 1.622222e-03   p_cons 3.771889e-01   p_joint 1.538889e-03

Joint ci ratio: 2.280534e-01	ci left: 1.375644e-03	ci right 1.734576e-03	k: 294	n:190000
Cons ci ratio: 1.154682e-02	ci left: 3.753774e-01	ci right 3.797422e-01	k: 71736	n:190000
KS ci ratio: 2.224588e-01	ci left: 1.450143e-03	ci right 1.817962e-03	k: 309	n:190000
IFNA14   190000 perm   45 sec   (4185 perm/sec)   p_kst 1.626316e-03   p_cons 3.775579e-01   p_joint 1.547368e-03

Joint ci ratio: 2.217526e-01	ci left: 1.387075e-03	ci right 1.737626e-03	k: 311	n:200000
Cons ci ratio: 1.126566e-02	ci left: 3.749652e-01	ci right 3.792183e-01	k: 75418	n:200000
KS ci ratio: 2.172652e-01	ci left: 1.448506e-03	ci right 1.806187e-03	k: 324	n:200000
IFNA14   200000 perm   49 sec   (4118 perm/sec)   p_kst 1.620000e-03   p_cons 3.770900e-01   p_joint 1.555000e-03

Joint ci ratio: 2.162762e-01	ci left: 1.393036e-03	ci right 1.735245e-03	k: 327	n:210000
Cons ci ratio: 1.099806e-02	ci left: 3.748504e-01	ci right 3.790006e-01	k: 79154	n:210000
KS ci ratio: 2.136819e-01	ci left: 1.429083e-03	ci right 1.775384e-03	k: 335	n:210000
IFNA14   210000 perm   52 sec   (4052 perm/sec)   p_kst 1.595238e-03   p_cons 3.769238e-01   p_joint 1.557143e-03

Joint ci ratio: 2.093656e-01	ci left: 1.424390e-03	ci right 1.761688e-03	k: 349	n:220000
Cons ci ratio: 1.074689e-02	ci left: 3.748244e-01	ci right 3.788788e-01	k: 82907	n:220000
KS ci ratio: 2.081775e-01	ci left: 1.441622e-03	ci right 1.780817e-03	k: 353	n:220000
IFNA14   220000 perm   55 sec   (3990 perm/sec)   p_kst 1.604545e-03   p_cons 3.768500e-01   p_joint 1.586364e-03

Joint ci ratio: 2.041801e-01	ci left: 1.436670e-03	ci right 1.767399e-03	k: 367	n:230000
Cons ci ratio: 1.050858e-02	ci left: 3.749623e-01	ci right 3.789277e-01	k: 86697	n:230000
KS ci ratio: 2.025331e-01	ci left: 1.461430e-03	ci right 1.794810e-03	k: 373	n:230000
IFNA14   230000 perm   58 sec   (3933 perm/sec)   p_kst 1.621739e-03   p_cons 3.769435e-01   p_joint 1.595652e-03

Joint ci ratio: 1.993618e-01	ci left: 1.448020e-03	ci right 1.772540e-03	k: 385	n:240000
Cons ci ratio: 1.028937e-02	ci left: 3.749107e-01	ci right 3.787923e-01	k: 90444	n:240000
KS ci ratio: 1.978277e-01	ci left: 1.471779e-03	ci right 1.798779e-03	k: 391	n:240000
IFNA14   240000 perm   62 sec   (3877 perm/sec)   p_kst 1.629167e-03   p_cons 3.768500e-01   p_joint 1.604167e-03

Joint ci ratio: 1.958427e-01	ci left: 1.443329e-03	ci right 1.760406e-03	k: 399	n:250000
Cons ci ratio: 1.008110e-02	ci left: 3.749678e-01	ci right 3.787710e-01	k: 94217	n:250000
KS ci ratio: 1.936725e-01	ci left: 1.477576e-03	ci right 1.798156e-03	k: 408	n:250000
IFNA14   250000 perm   65 sec   (3821 perm/sec)   p_kst 1.632000e-03   p_cons 3.768680e-01   p_joint 1.596000e-03

Joint ci ratio: 1.895459e-01	ci left: 1.486657e-03	ci right 1.801543e-03	k: 426	n:260000
Cons ci ratio: 9.891951e-03	ci left: 3.746909e-01	ci right 3.784195e-01	k: 97904	n:260000
KS ci ratio: 1.895459e-01	ci left: 1.486657e-03	ci right 1.801543e-03	k: 426	n:260000
IFNA14   260000 perm   69 sec   (3766 perm/sec)   p_kst 1.638462e-03   p_cons 3.765538e-01   p_joint 1.638462e-03

Joint ci ratio: 1.854637e-01	ci left: 1.498664e-03	ci right 1.808487e-03	k: 445	n:270000
Cons ci ratio: 9.710529e-03	ci left: 3.745572e-01	ci right 3.782158e-01	k: 101624	n:270000
KS ci ratio: 1.863024e-01	ci left: 1.484537e-03	ci right 1.792985e-03	k: 441	n:270000
IFNA14   270000 perm   73 sec   (3713 perm/sec)   p_kst 1.633333e-03   p_cons 3.763852e-01   p_joint 1.648148e-03

Joint ci ratio: 1.816343e-01	ci left: 1.509880e-03	ci right 1.814869e-03	k: 464	n:280000
Cons ci ratio: 9.527857e-03	ci left: 3.749689e-01	ci right 3.785622e-01	k: 105494	n:280000
KS ci ratio: 1.830194e-01	ci left: 1.486020e-03	ci right 1.788731e-03	k: 457	n:280000
IFNA14   280000 perm   76 sec   (3663 perm/sec)   p_kst 1.632143e-03   p_cons 3.767643e-01   p_joint 1.657143e-03

Joint ci ratio: 1.683764e-01	ci left: 1.708435e-03	ci right 2.025790e-03	k: 540	n:290000
Cons ci ratio: 9.359233e-03	ci left: 3.751461e-01	ci right 3.786771e-01	k: 109304	n:290000
KS ci ratio: 1.802854e-01	ci left: 1.480858e-03	ci right 1.777520e-03	k: 471	n:290000
IFNA14   290000 perm   80 sec   (3614 perm/sec)   p_kst 1.624138e-03   p_cons 3.769103e-01   p_joint 1.862069e-03

Joint ci ratio: 1.649063e-01	ci left: 1.724958e-03	ci right 2.038123e-03	k: 563	n:300000
Cons ci ratio: 9.204154e-03	ci left: 3.750622e-01	ci right 3.785335e-01	k: 113039	n:300000
KS ci ratio: 1.765820e-01	ci left: 1.495186e-03	ci right 1.787909e-03	k: 491	n:300000
IFNA14   300000 perm   84 sec   (3567 perm/sec)   p_kst 1.636667e-03   p_cons 3.767967e-01   p_joint 1.876667e-03

Joint ci ratio: 1.730978e-01	ci left: 1.508648e-03	ci right 1.797570e-03	k: 511	n:310000
Cons ci ratio: 9.055664e-03	ci left: 3.750293e-01	ci right 3.784440e-01	k: 116788	n:310000
KS ci ratio: 1.736080e-01	ci left: 1.499390e-03	ci right 1.787474e-03	k: 508	n:310000
IFNA14   310000 perm   88 sec   (3520 perm/sec)   p_kst 1.638710e-03   p_cons 3.767355e-01   p_joint 1.648387e-03

Joint ci ratio: 1.714335e-01	ci left: 1.491405e-03	ci right 1.773994e-03	k: 521	n:320000
Cons ci ratio: 8.909334e-03	ci left: 3.752517e-01	ci right 3.786130e-01	k: 120618	n:320000
KS ci ratio: 1.717634e-01	ci left: 1.485423e-03	ci right 1.767476e-03	k: 519	n:320000
IFNA14   320000 perm   93 sec   (3458 perm/sec)   p_kst 1.621875e-03   p_cons 3.769312e-01   p_joint 1.628125e-03

Joint ci ratio: 1.590926e-01	ci left: 1.690256e-03	ci right 1.985269e-03	k: 605	n:330000
Cons ci ratio: 8.775363e-03	ci left: 3.751674e-01	ci right 3.784772e-01	k: 124351	n:330000
KS ci ratio: 1.698162e-01	ci left: 1.475218e-03	ci right 1.751834e-03	k: 531	n:330000
IFNA14   330000 perm   97 sec   (3408 perm/sec)   p_kst 1.609091e-03   p_cons 3.768212e-01   p_joint 1.833333e-03

Joint ci ratio: 1.569073e-01	ci left: 1.688565e-03	ci right 1.978854e-03	k: 622	n:340000
Cons ci ratio: 8.639790e-03	ci left: 3.754940e-01	ci right 3.787552e-01	k: 128222	n:340000
KS ci ratio: 1.677795e-01	ci left: 1.468449e-03	ci right 1.740159e-03	k: 544	n:340000
IFNA14   340000 perm   101 sec   (3353 perm/sec)   p_kst 1.600000e-03   p_cons 3.771235e-01   p_joint 1.829412e-03

Joint ci ratio: 1.546886e-01	ci left: 1.689744e-03	ci right 1.975747e-03	k: 640	n:350000
Cons ci ratio: 8.514137e-03	ci left: 3.755910e-01	ci right 3.788053e-01	k: 132019	n:350000
KS ci ratio: 1.653696e-01	ci left: 1.470302e-03	ci right 1.738058e-03	k: 560	n:350000
IFNA14   350000 perm   106 sec   (3314 perm/sec)   p_kst 1.600000e-03   p_cons 3.771971e-01   p_joint 1.828571e-03

Joint ci ratio: 1.618016e-01	ci left: 1.496064e-03	ci right 1.762061e-03	k: 585	n:360000
Cons ci ratio: 8.397038e-03	ci left: 3.755025e-01	ci right 3.786717e-01	k: 135751	n:360000
KS ci ratio: 1.634869e-01	ci left: 1.464085e-03	ci right 1.727375e-03	k: 573	n:360000
IFNA14   360000 perm   110 sec   (3274 perm/sec)   p_kst 1.591667e-03   p_cons 3.770861e-01   p_joint 1.625000e-03

Joint ci ratio: 1.601709e-01	ci left: 1.486755e-03	ci right 1.748177e-03	k: 597	n:370000
Cons ci ratio: 8.281114e-03	ci left: 3.756190e-01	ci right 3.787451e-01	k: 139557	n:370000
KS ci ratio: 1.612549e-01	ci left: 1.466002e-03	ci right 1.725688e-03	k: 589	n:370000
IFNA14   370000 perm   114 sec   (3237 perm/sec)   p_kst 1.591892e-03   p_cons 3.771811e-01   p_joint 1.613514e-03

Joint ci ratio: 1.489880e-01	ci left: 1.682924e-03	ci right 1.956341e-03	k: 690	n:380000
Cons ci ratio: 8.171922e-03	ci left: 3.756112e-01	ci right 3.786959e-01	k: 143318	n:380000
KS ci ratio: 1.592435e-01	ci left: 1.465313e-03	ci right 1.721331e-03	k: 604	n:380000
IFNA14   380000 perm   119 sec   (3195 perm/sec)   p_kst 1.589474e-03   p_cons 3.771526e-01   p_joint 1.815789e-03

Joint ci ratio: 1.569258e-01	ci left: 1.472070e-03	ci right 1.725172e-03	k: 622	n:390000
Cons ci ratio: 8.065441e-03	ci left: 3.756913e-01	ci right 3.787362e-01	k: 147113	n:390000
KS ci ratio: 1.582026e-01	ci left: 1.447438e-03	ci right 1.698522e-03	k: 612	n:390000
IFNA14   390000 perm   123 sec   (3159 perm/sec)   p_kst 1.569231e-03   p_cons 3.772128e-01   p_joint 1.594872e-03

Joint ci ratio: 1.459581e-01	ci left: 1.668602e-03	ci right 1.933698e-03	k: 719	n:400000
Cons ci ratio: 7.964373e-03	ci left: 3.756876e-01	ci right 3.786942e-01	k: 150876	n:400000
KS ci ratio: 1.551921e-01	ci left: 1.468901e-03	ci right 1.718408e-03	k: 636	n:400000
IFNA14   400000 perm   128 sec   (3124 perm/sec)   p_kst 1.590000e-03   p_cons 3.771900e-01   p_joint 1.797500e-03

Joint ci ratio: 1.442650e-01	ci left: 1.667863e-03	ci right 1.929503e-03	k: 736	n:410000
Cons ci ratio: 7.868563e-03	ci left: 3.755918e-01	ci right 3.785612e-01	k: 154601	n:410000
KS ci ratio: 1.528110e-01	ci left: 1.479975e-03	ci right 1.727154e-03	k: 656	n:410000
IFNA14   410000 perm   133 sec   (3089 perm/sec)   p_kst 1.600000e-03   p_cons 3.770756e-01   p_joint 1.795122e-03

Joint ci ratio: 1.424405e-01	ci left: 1.671767e-03	ci right 1.930421e-03	k: 755	n:420000
Cons ci ratio: 7.776366e-03	ci left: 3.754864e-01	ci right 3.784201e-01	k: 158320	n:420000
KS ci ratio: 1.509836e-01	ci left: 1.481385e-03	ci right 1.725573e-03	k: 672	n:420000
IFNA14   420000 perm   137 sec   (3057 perm/sec)   p_kst 1.600000e-03   p_cons 3.769524e-01   p_joint 1.797619e-03

Joint ci ratio: 1.495467e-01	ci left: 1.476030e-03	ci right 1.716812e-03	k: 685	n:430000
Cons ci ratio: 7.679652e-03	ci left: 3.758556e-01	ci right 3.787554e-01	k: 162241	n:430000
KS ci ratio: 1.495467e-01	ci left: 1.476030e-03	ci right 1.716812e-03	k: 685	n:430000
IFNA14   430000 perm   142 sec   (3022 perm/sec)   p_kst 1.593023e-03   p_cons 3.773047e-01   p_joint 1.593023e-03

Joint ci ratio: 1.488986e-01	ci left: 1.455610e-03	ci right 1.691941e-03	k: 691	n:440000
Cons ci ratio: 7.589461e-03	ci left: 3.760219e-01	ci right 3.788888e-01	k: 166080	n:440000
KS ci ratio: 1.483628e-01	ci left: 1.466552e-03	ci right 1.703726e-03	k: 696	n:440000
IFNA14   440000 perm   147 sec   (2988 perm/sec)   p_kst 1.581818e-03   p_cons 3.774545e-01   p_joint 1.570455e-03

Joint ci ratio: 1.474152e-01	ci left: 1.453221e-03	ci right 1.686606e-03	k: 705	n:450000
Cons ci ratio: 7.503154e-03	ci left: 3.761322e-01	ci right 3.789672e-01	k: 169897	n:450000
KS ci ratio: 1.472065e-01	ci left: 1.457502e-03	ci right 1.691214e-03	k: 707	n:450000
IFNA14   450000 perm   152 sec   (2955 perm/sec)   p_kst 1.571111e-03   p_cons 3.775489e-01   p_joint 1.566667e-03

Joint ci ratio: 1.463831e-01	ci left: 1.442568e-03	ci right 1.672479e-03	k: 715	n:460000
Cons ci ratio: 7.421545e-03	ci left: 3.761227e-01	ci right 3.789267e-01	k: 173661	n:460000
KS ci ratio: 1.454702e-01	ci left: 1.461420e-03	ci right 1.692757e-03	k: 724	n:460000
IFNA14   460000 perm   157 sec   (2924 perm/sec)   p_kst 1.573913e-03   p_cons 3.775239e-01   p_joint 1.554348e-03

Joint ci ratio: 1.448735e-01	ci left: 1.442627e-03	ci right 1.669971e-03	k: 730	n:470000
Cons ci ratio: 7.342343e-03	ci left: 3.761266e-01	ci right 3.789005e-01	k: 177431	n:470000
KS ci ratio: 1.436002e-01	ci left: 1.469290e-03	ci right 1.698626e-03	k: 743	n:470000
IFNA14   470000 perm   162 sec   (2892 perm/sec)   p_kst 1.580851e-03   p_cons 3.775128e-01   p_joint 1.553191e-03

Joint ci ratio: 1.349734e-01	ci left: 1.635748e-03	ci right 1.874497e-03	k: 841	n:480000
Cons ci ratio: 7.267879e-03	ci left: 3.759847e-01	ci right 3.787293e-01	k: 181131	n:480000
KS ci ratio: 1.417076e-01	ci left: 1.478860e-03	ci right 1.706390e-03	k: 763	n:480000
IFNA14   480000 perm   168 sec   (2858 perm/sec)   p_kst 1.589583e-03   p_cons 3.773563e-01   p_joint 1.752083e-03

Joint ci ratio: 1.333207e-01	ci left: 1.643785e-03	ci right 1.880536e-03	k: 862	n:490000
Cons ci ratio: 7.191197e-03	ci left: 3.761383e-01	ci right 3.788550e-01	k: 184973	n:490000
KS ci ratio: 1.399773e-01	ci left: 1.486089e-03	ci right 1.711707e-03	k: 782	n:490000
IFNA14   490000 perm   173 sec   (2828 perm/sec)   p_kst 1.595918e-03   p_cons 3.774959e-01   p_joint 1.759184e-03

Joint ci ratio: 1.320267e-01	ci left: 1.643780e-03	ci right 1.878054e-03	k: 879	n:500000
Cons ci ratio: 7.118982e-03	ci left: 3.761481e-01	ci right 3.788374e-01	k: 188746	n:500000
KS ci ratio: 1.386556e-01	ci left: 1.485321e-03	ci right 1.708518e-03	k: 797	n:500000
IFNA14   500000 perm   179 sec   (2798 perm/sec)   p_kst 1.594000e-03   p_cons 3.774920e-01   p_joint 1.758000e-03

Joint ci ratio: 1.301174e-01	ci left: 1.660859e-03	ci right 1.893879e-03	k: 905	n:510000
Cons ci ratio: 7.047253e-03	ci left: 3.762673e-01	ci right 3.789302e-01	k: 192575	n:510000
KS ci ratio: 1.365322e-01	ci left: 1.503531e-03	ci right 1.725722e-03	k: 822	n:510000
IFNA14   510000 perm   184 sec   (2771 perm/sec)   p_kst 1.611765e-03   p_cons 3.775980e-01   p_joint 1.774510e-03

Joint ci ratio: 1.284960e-01	ci left: 1.671720e-03	ci right 1.903118e-03	k: 928	n:520000
Cons ci ratio: 6.979619e-03	ci left: 3.762494e-01	ci right 3.788866e-01	k: 196335	n:520000
KS ci ratio: 1.350629e-01	ci left: 1.508056e-03	ci right 1.728326e-03	k: 840	n:520000
IFNA14   520000 perm   189 sec   (2744 perm/sec)   p_kst 1.615385e-03   p_cons 3.775673e-01   p_joint 1.784615e-03

Joint ci ratio: 1.353879e-01	ci left: 1.472309e-03	ci right 1.687916e-03	k: 836	n:530000
Cons ci ratio: 6.910982e-03	ci left: 3.764303e-01	ci right 3.790427e-01	k: 200200	n:530000
KS ci ratio: 1.341101e-01	ci left: 1.501481e-03	ci right 1.719119e-03	k: 852	n:530000
IFNA14   530000 perm   195 sec   (2719 perm/sec)   p_kst 1.607547e-03   p_cons 3.777358e-01   p_joint 1.577358e-03

Joint ci ratio: 1.345075e-01	ci left: 1.464726e-03	ci right 1.677716e-03	k: 847	n:540000
Cons ci ratio: 6.846163e-03	ci left: 3.764788e-01	ci right 3.790669e-01	k: 203997	n:540000
KS ci ratio: 1.331771e-01	ci left: 1.495155e-03	ci right 1.710249e-03	k: 864	n:540000
IFNA14   540000 perm   200 sec   (2694 perm/sec)   p_kst 1.600000e-03   p_cons 3.777722e-01   p_joint 1.568519e-03

Joint ci ratio: 1.329483e-01	ci left: 1.473242e-03	ci right 1.684791e-03	k: 867	n:550000
Cons ci ratio: 6.784315e-03	ci left: 3.764439e-01	ci right 3.790083e-01	k: 207749	n:550000
KS ci ratio: 1.320373e-01	ci left: 1.494338e-03	ci right 1.707331e-03	k: 879	n:550000
IFNA14   550000 perm   206 sec   (2670 perm/sec)   p_kst 1.598182e-03   p_cons 3.777255e-01   p_joint 1.576364e-03

Joint ci ratio: 1.316651e-01	ci left: 1.476287e-03	ci right 1.686067e-03	k: 884	n:560000
Cons ci ratio: 6.723194e-03	ci left: 3.764746e-01	ci right 3.790160e-01	k: 211537	n:560000
KS ci ratio: 1.309263e-01	ci left: 1.493558e-03	ci right 1.704509e-03	k: 894	n:560000
IFNA14   560000 perm   212 sec   (2644 perm/sec)   p_kst 1.596429e-03   p_cons 3.777446e-01   p_joint 1.578571e-03

Joint ci ratio: 1.306361e-01	ci left: 1.474142e-03	ci right 1.681854e-03	k: 898	n:570000
Cons ci ratio: 6.663447e-03	ci left: 3.765218e-01	ci right 3.790408e-01	k: 215335	n:570000
KS ci ratio: 1.297715e-01	ci left: 1.494510e-03	ci right 1.703590e-03	k: 910	n:570000
IFNA14   570000 perm   218 sec   (2619 perm/sec)   p_kst 1.596491e-03   p_cons 3.777807e-01   p_joint 1.575439e-03

Joint ci ratio: 1.289956e-01	ci left: 1.487094e-03	ci right 1.693798e-03	k: 921	n:580000
Cons ci ratio: 6.606549e-03	ci left: 3.764762e-01	ci right 3.789733e-01	k: 219080	n:580000
KS ci ratio: 1.287162e-01	ci left: 1.493769e-03	ci right 1.700916e-03	k: 925	n:580000
IFNA14   580000 perm   224 sec   (2594 perm/sec)   p_kst 1.594828e-03   p_cons 3.777241e-01   p_joint 1.587931e-03

Joint ci ratio: 1.274829e-01	ci left: 1.497982e-03	ci right 1.703572e-03	k: 943	n:590000
Cons ci ratio: 6.550470e-03	ci left: 3.764762e-01	ci right 3.789521e-01	k: 222851	n:590000
KS ci ratio: 1.274153e-01	ci left: 1.499623e-03	ci right 1.705321e-03	k: 944	n:590000
IFNA14   590000 perm   230 sec   (2569 perm/sec)   p_kst 1.600000e-03   p_cons 3.777136e-01   p_joint 1.598305e-03

Joint ci ratio: 1.265482e-01	ci left: 1.495607e-03	ci right 1.699254e-03	k: 957	n:600000
Cons ci ratio: 6.496785e-03	ci left: 3.764047e-01	ci right 3.788598e-01	k: 226579	n:600000
KS ci ratio: 1.263502e-01	ci left: 1.500449e-03	ci right 1.704412e-03	k: 960	n:600000
IFNA14   600000 perm   236 sec   (2545 perm/sec)   p_kst 1.600000e-03   p_cons 3.776317e-01   p_joint 1.595000e-03

Joint ci ratio: 1.252472e-01	ci left: 1.502844e-03	ci right 1.705216e-03	k: 977	n:610000
Cons ci ratio: 6.444579e-03	ci left: 3.763226e-01	ci right 3.787573e-01	k: 230299	n:610000
KS ci ratio: 1.255045e-01	ci left: 1.496492e-03	ci right 1.698453e-03	k: 973	n:610000
IFNA14   610000 perm   242 sec   (2522 perm/sec)   p_kst 1.595082e-03   p_cons 3.775393e-01   p_joint 1.601639e-03

Joint ci ratio: 1.171313e-01	ci left: 1.697583e-03	ci right 1.910342e-03	k: 1117	n:620000
Cons ci ratio: 6.392755e-03	ci left: 3.763060e-01	ci right 3.787209e-01	k: 234058	n:620000
KS ci ratio: 1.242977e-01	ci left: 1.502043e-03	ci right 1.702661e-03	k: 992	n:620000
IFNA14   620000 perm   248 sec   (2499 perm/sec)   p_kst 1.600000e-03   p_cons 3.775129e-01   p_joint 1.801613e-03

Joint ci ratio: 1.161996e-01	ci left: 1.698374e-03	ci right 1.909424e-03	k: 1135	n:630000
Cons ci ratio: 6.339250e-03	ci left: 3.765058e-01	ci right 3.789017e-01	k: 237953	n:630000
KS ci ratio: 1.231250e-01	ci left: 1.507426e-03	ci right 1.706726e-03	k: 1011	n:630000
IFNA14   630000 perm   254 sec   (2478 perm/sec)   p_kst 1.604762e-03   p_cons 3.777032e-01   p_joint 1.801587e-03

Joint ci ratio: 1.151899e-01	ci left: 1.702183e-03	ci right 1.911743e-03	k: 1155	n:640000
Cons ci ratio: 6.292416e-03	ci left: 3.762996e-01	ci right 3.786765e-01	k: 241592	n:640000
KS ci ratio: 1.220443e-01	ci left: 1.511135e-03	ci right 1.709045e-03	k: 1029	n:640000
IFNA14   640000 perm   261 sec   (2457 perm/sec)   p_kst 1.607813e-03   p_cons 3.774875e-01   p_joint 1.804688e-03

Joint ci ratio: 1.143034e-01	ci left: 1.702893e-03	ci right 1.910818e-03	k: 1173	n:650000
Cons ci ratio: 6.245009e-03	ci left: 3.762198e-01	ci right 3.785782e-01	k: 245309	n:650000
KS ci ratio: 1.208760e-01	ci left: 1.517722e-03	ci right 1.714455e-03	k: 1049	n:650000
IFNA14   650000 perm   267 sec   (2436 perm/sec)   p_kst 1.613846e-03   p_cons 3.773985e-01   p_joint 1.804615e-03

Joint ci ratio: 1.133419e-01	ci left: 1.706532e-03	ci right 1.913031e-03	k: 1193	n:660000
Cons ci ratio: 6.196459e-03	ci left: 3.763091e-01	ci right 3.786496e-01	k: 249136	n:660000
KS ci ratio: 1.197406e-01	ci left: 1.524118e-03	ci right 1.719693e-03	k: 1069	n:660000
IFNA14   660000 perm   273 sec   (2415 perm/sec)   p_kst 1.619697e-03   p_cons 3.774788e-01   p_joint 1.807576e-03

Joint ci ratio: 1.124042e-01	ci left: 1.710070e-03	ci right 1.915172e-03	k: 1213	n:670000
Cons ci ratio: 6.150723e-03	ci left: 3.762659e-01	ci right 3.785888e-01	k: 252876	n:670000
KS ci ratio: 1.189651e-01	ci left: 1.521641e-03	ci right 1.715545e-03	k: 1083	n:670000
IFNA14   670000 perm   280 sec   (2395 perm/sec)   p_kst 1.616418e-03   p_cons 3.774269e-01   p_joint 1.810448e-03

Joint ci ratio: 1.181505e-01	ci left: 1.520669e-03	ci right 1.713029e-03	k: 1098	n:680000
Cons ci ratio: 6.105277e-03	ci left: 3.762785e-01	ci right 3.785843e-01	k: 256653	n:680000
KS ci ratio: 1.180967e-01	ci left: 1.522096e-03	ci right 1.714543e-03	k: 1099	n:680000
IFNA14   680000 perm   286 sec   (2374 perm/sec)   p_kst 1.616176e-03   p_cons 3.774309e-01   p_joint 1.614706e-03

Joint ci ratio: 1.105967e-01	ci left: 1.716857e-03	ci right 1.919246e-03	k: 1253	n:690000
Cons ci ratio: 6.061853e-03	ci left: 3.762111e-01	ci right 3.785000e-01	k: 260375	n:690000
KS ci ratio: 1.169849e-01	ci left: 1.529577e-03	ci right 1.721023e-03	k: 1120	n:690000
IFNA14   690000 perm   293 sec   (2352 perm/sec)   p_kst 1.623188e-03   p_cons 3.773551e-01   p_joint 1.815942e-03

Joint ci ratio: 1.094670e-01	ci left: 1.728452e-03	ci right 1.929992e-03	k: 1279	n:700000
Cons ci ratio: 6.018427e-03	ci left: 3.762171e-01	ci right 3.784896e-01	k: 264147	n:700000
KS ci ratio: 1.159039e-01	ci left: 1.536852e-03	ci right 1.727310e-03	k: 1141	n:700000
IFNA14   700000 perm   300 sec   (2333 perm/sec)   p_kst 1.630000e-03   p_cons 3.773529e-01   p_joint 1.827143e-03

Joint ci ratio: 1.083713e-01	ci left: 1.739730e-03	ci right 1.940425e-03	k: 1305	n:710000
Cons ci ratio: 5.975258e-03	ci left: 3.762751e-01	ci right 3.785315e-01	k: 267956	n:710000
KS ci ratio: 1.146059e-01	ci left: 1.550771e-03	ci right 1.740656e-03	k: 1167	n:710000
IFNA14   710000 perm   307 sec   (2314 perm/sec)   p_kst 1.643662e-03   p_cons 3.774028e-01   p_joint 1.838028e-03

Joint ci ratio: 1.075102e-01	ci left: 1.743947e-03	ci right 1.943429e-03	k: 1326	n:720000
Cons ci ratio: 5.933619e-03	ci left: 3.762829e-01	ci right 3.785236e-01	k: 271730	n:720000
KS ci ratio: 1.139253e-01	ci left: 1.548121e-03	ci right 1.736480e-03	k: 1181	n:720000
IFNA14   720000 perm   314 sec   (2295 perm/sec)   p_kst 1.640278e-03   p_cons 3.774028e-01   p_joint 1.841667e-03

Joint ci ratio: 1.066297e-01	ci left: 1.749387e-03	ci right 1.947750e-03	k: 1348	n:730000
Cons ci ratio: 5.892684e-03	ci left: 3.763029e-01	ci right 3.785282e-01	k: 275513	n:730000
KS ci ratio: 1.130204e-01	ci left: 1.552203e-03	ci right 1.739459e-03	k: 1200	n:730000
IFNA14   730000 perm   321 sec   (2277 perm/sec)   p_kst 1.643836e-03   p_cons 3.774151e-01   p_joint 1.846575e-03

Joint ci ratio: 1.060810e-01	ci left: 1.744162e-03	ci right 1.940851e-03	k: 1362	n:740000
Cons ci ratio: 5.853998e-03	ci left: 3.762089e-01	ci right 3.784190e-01	k: 279212	n:740000
KS ci ratio: 1.123212e-01	ci left: 1.550926e-03	ci right 1.736794e-03	k: 1215	n:740000
IFNA14   740000 perm   328 sec   (2259 perm/sec)   p_kst 1.641892e-03   p_cons 3.773135e-01   p_joint 1.840541e-03

Joint ci ratio: 1.055791e-01	ci left: 1.737781e-03	ci right 1.932766e-03	k: 1375	n:750000
Cons ci ratio: 5.816592e-03	ci left: 3.760749e-01	ci right 3.782700e-01	k: 282879	n:750000
KS ci ratio: 1.117259e-01	ci left: 1.547095e-03	ci right 1.731456e-03	k: 1228	n:750000
IFNA14   750000 perm   335 sec   (2241 perm/sec)   p_kst 1.637333e-03   p_cons 3.771720e-01   p_joint 1.833333e-03

Joint ci ratio: 1.048952e-01	ci left: 1.737976e-03	ci right 1.931642e-03	k: 1393	n:760000
Cons ci ratio: 5.777417e-03	ci left: 3.761456e-01	ci right 3.783264e-01	k: 286699	n:760000
KS ci ratio: 1.109165e-01	ci left: 1.549763e-03	ci right 1.733016e-03	k: 1246	n:760000
IFNA14   760000 perm   342 sec   (2223 perm/sec)   p_kst 1.639474e-03   p_cons 3.772355e-01   p_joint 1.832895e-03

Joint ci ratio: 1.041138e-01	ci left: 1.741965e-03	ci right 1.934541e-03	k: 1414	n:770000
Cons ci ratio: 5.740086e-03	ci left: 3.761276e-01	ci right 3.782941e-01	k: 290452	n:770000
KS ci ratio: 1.103430e-01	ci left: 1.546052e-03	ci right 1.727860e-03	k: 1259	n:770000
IFNA14   770000 perm   349 sec   (2206 perm/sec)   p_kst 1.635065e-03   p_cons 3.772104e-01   p_joint 1.836364e-03

Joint ci ratio: 1.033495e-01	ci left: 1.745857e-03	ci right 1.937360e-03	k: 1435	n:780000
Cons ci ratio: 5.701571e-03	ci left: 3.762664e-01	ci right 3.784191e-01	k: 294327	n:780000
KS ci ratio: 1.096491e-01	ci left: 1.546179e-03	ci right 1.726785e-03	k: 1275	n:780000
IFNA14   780000 perm   356 sec   (2189 perm/sec)   p_kst 1.634615e-03   p_cons 3.773423e-01   p_joint 1.839744e-03

Joint ci ratio: 1.028497e-01	ci left: 1.741022e-03	ci right 1.931015e-03	k: 1449	n:790000
Cons ci ratio: 5.666171e-03	ci left: 3.762069e-01	ci right 3.783459e-01	k: 298048	n:790000
KS ci ratio: 1.091798e-01	ci left: 1.540150e-03	ci right 1.719232e-03	k: 1286	n:790000
IFNA14   790000 perm   364 sec   (2171 perm/sec)   p_kst 1.627848e-03   p_cons 3.772759e-01   p_joint 1.834177e-03

Joint ci ratio: 1.022521e-01	ci left: 1.739964e-03	ci right 1.928672e-03	k: 1466	n:800000
Cons ci ratio: 5.632096e-03	ci left: 3.760928e-01	ci right 3.782181e-01	k: 301724	n:800000
KS ci ratio: 1.084242e-01	ci left: 1.542786e-03	ci right 1.720854e-03	k: 1304	n:800000
IFNA14   800000 perm   371 sec   (2154 perm/sec)   p_kst 1.630000e-03   p_cons 3.771550e-01   p_joint 1.832500e-03

Joint ci ratio: 1.078474e-01	ci left: 1.540556e-03	ci right 1.717360e-03	k: 1318	n:810000
Cons ci ratio: 5.597598e-03	ci left: 3.760678e-01	ci right 3.781800e-01	k: 305470	n:810000
KS ci ratio: 1.080115e-01	ci left: 1.535751e-03	ci right 1.712289e-03	k: 1314	n:810000
IFNA14   810000 perm   379 sec   (2138 perm/sec)   p_kst 1.622222e-03   p_cons 3.771235e-01   p_joint 1.627160e-03

Joint ci ratio: 1.069986e-01	ci left: 1.546690e-03	ci right 1.722714e-03	k: 1339	n:820000
Cons ci ratio: 5.562672e-03	ci left: 3.761325e-01	ci right 3.782318e-01	k: 309289	n:820000
KS ci ratio: 1.072394e-01	ci left: 1.539569e-03	ci right 1.715201e-03	k: 1333	n:820000
IFNA14   820000 perm   386 sec   (2122 perm/sec)   p_kst 1.625610e-03   p_cons 3.771817e-01   p_joint 1.632927e-03

Joint ci ratio: 1.004868e-01	ci left: 1.738136e-03	ci right 1.923200e-03	k: 1518	n:830000
Cons ci ratio: 5.529823e-03	ci left: 3.760740e-01	ci right 3.781606e-01	k: 313007	n:830000
KS ci ratio: 1.069597e-01	ci left: 1.529227e-03	ci right 1.703196e-03	k: 1340	n:830000
IFNA14   830000 perm   394 sec   (2106 perm/sec)   p_kst 1.614458e-03   p_cons 3.771169e-01   p_joint 1.828916e-03

Joint ci ratio: 9.996189e-02	ci left: 1.736014e-03	ci right 1.919829e-03	k: 1534	n:840000
Cons ci ratio: 5.496547e-03	ci left: 3.761027e-01	ci right 3.781768e-01	k: 316797	n:840000
KS ci ratio: 1.064059e-01	ci left: 1.527244e-03	ci right 1.700031e-03	k: 1354	n:840000
IFNA14   840000 perm   402 sec   (2090 perm/sec)   p_kst 1.611905e-03   p_cons 3.771393e-01   p_joint 1.826190e-03

Joint ci ratio: 9.903017e-02	ci left: 1.748860e-03	ci right 1.932209e-03	k: 1563	n:850000
Cons ci ratio: 5.464289e-03	ci left: 3.760942e-01	ci right 3.781561e-01	k: 320556	n:850000
KS ci ratio: 1.052463e-01	ci left: 1.543637e-03	ci right 1.716258e-03	k: 1384	n:850000
IFNA14   850000 perm   410 sec   (2074 perm/sec)   p_kst 1.628235e-03   p_cons 3.771247e-01   p_joint 1.838824e-03

Joint ci ratio: 9.837180e-02	ci left: 1.752340e-03	ci right 1.934762e-03	k: 1584	n:860000
Cons ci ratio: 5.433721e-03	ci left: 3.759884e-01	ci right 3.780381e-01	k: 324231	n:860000
KS ci ratio: 1.045689e-01	ci left: 1.546069e-03	ci right 1.717781e-03	k: 1402	n:860000
IFNA14   860000 perm   418 sec   (2059 perm/sec)   p_kst 1.630233e-03   p_cons 3.770128e-01   p_joint 1.841860e-03

Joint ci ratio: 9.760468e-02	ci left: 1.760230e-03	ci right 1.941963e-03	k: 1609	n:870000
Cons ci ratio: 5.403065e-03	ci left: 3.759367e-01	ci right 3.779745e-01	k: 327951	n:870000
KS ci ratio: 1.040144e-01	ci left: 1.545090e-03	ci right 1.715727e-03	k: 1417	n:870000
IFNA14   870000 perm   426 sec   (2044 perm/sec)   p_kst 1.628736e-03   p_cons 3.769552e-01   p_joint 1.849425e-03

Joint ci ratio: 9.703378e-02	ci left: 1.761293e-03	ci right 1.942011e-03	k: 1628	n:880000
Cons ci ratio: 5.373339e-03	ci left: 3.758498e-01	ci right 3.778760e-01	k: 331639	n:880000
KS ci ratio: 1.033603e-01	ci left: 1.547456e-03	ci right 1.717215e-03	k: 1435	n:880000
IFNA14   880000 perm   434 sec   (2026 perm/sec)   p_kst 1.630682e-03   p_cons 3.768625e-01   p_joint 1.850000e-03

Joint ci ratio: 9.661973e-02	ci left: 1.756852e-03	ci right 1.936302e-03	k: 1642	n:890000
Cons ci ratio: 5.341962e-03	ci left: 3.759526e-01	ci right 3.779673e-01	k: 335494	n:890000
KS ci ratio: 1.030384e-01	ci left: 1.539920e-03	ci right 1.708294e-03	k: 1444	n:890000
IFNA14   890000 perm   442 sec   (2012 perm/sec)   p_kst 1.622472e-03   p_cons 3.769596e-01   p_joint 1.844944e-03

Joint ci ratio: 9.632748e-02	ci left: 1.748174e-03	ci right 1.926167e-03	k: 1652	n:900000
Cons ci ratio: 5.313542e-03	ci left: 3.758398e-01	ci right 3.778432e-01	k: 339157	n:900000
KS ci ratio: 1.026487e-01	ci left: 1.534717e-03	ci right 1.701850e-03	k: 1455	n:900000
IFNA14   900000 perm   451 sec   (1997 perm/sec)   p_kst 1.616667e-03   p_cons 3.768411e-01   p_joint 1.835556e-03

Joint ci ratio: 9.574989e-02	ci left: 1.750414e-03	ci right 1.927506e-03	k: 1672	n:910000
Cons ci ratio: 5.284061e-03	ci left: 3.758635e-01	ci right 3.778559e-01	k: 342942	n:910000
KS ci ratio: 1.020546e-01	ci left: 1.536056e-03	ci right 1.702307e-03	k: 1472	n:910000
IFNA14   910000 perm   459 sec   (1983 perm/sec)   p_kst 1.617582e-03   p_cons 3.768593e-01   p_joint 1.837363e-03

Joint ci ratio: 9.512629e-02	ci left: 1.754730e-03	ci right 1.931039e-03	k: 1694	n:920000
Cons ci ratio: 5.254786e-03	ci left: 3.759118e-01	ci right 3.778934e-01	k: 346750	n:920000
KS ci ratio: 1.015390e-01	ci left: 1.535249e-03	ci right 1.700523e-03	k: 1487	n:920000
IFNA14   920000 perm   467 sec   (1969 perm/sec)   p_kst 1.616304e-03   p_cons 3.769022e-01   p_joint 1.841304e-03

Joint ci ratio: 9.462520e-02	ci left: 1.754758e-03	ci right 1.930089e-03	k: 1712	n:930000
Cons ci ratio: 5.225740e-03	ci left: 3.759816e-01	ci right 3.779525e-01	k: 350579	n:930000
KS ci ratio: 1.010311e-01	ci left: 1.534461e-03	ci right 1.698776e-03	k: 1502	n:930000
IFNA14   930000 perm   475 sec   (1956 perm/sec)   p_kst 1.615054e-03   p_cons 3.769667e-01   p_joint 1.840860e-03

Joint ci ratio: 9.391478e-02	ci left: 1.763098e-03	ci right 1.937867e-03	k: 1738	n:940000
Cons ci ratio: 5.197512e-03	ci left: 3.760191e-01	ci right 3.779796e-01	k: 354379	n:940000
KS ci ratio: 1.004645e-01	ci left: 1.535766e-03	ci right 1.699244e-03	k: 1519	n:940000
IFNA14   940000 perm   484 sec   (1943 perm/sec)   p_kst 1.615957e-03   p_cons 3.769989e-01   p_joint 1.848936e-03

Joint ci ratio: 9.340588e-02	ci left: 1.764071e-03	ci right 1.937937e-03	k: 1757	n:950000
Cons ci ratio: 5.169702e-03	ci left: 3.760590e-01	ci right 3.780091e-01	k: 358182	n:950000
KS ci ratio: 9.997249e-02	ci left: 1.534994e-03	ci right 1.697543e-03	k: 1534	n:950000
IFNA14   950000 perm   492 sec   (1930 perm/sec)   p_kst 1.614737e-03   p_cons 3.770337e-01   p_joint 1.849474e-03

Outputting figure to mutsig2_images.part000000000083/IFNA14.2_574_950000_0.0016147_0.37703_0.0018495.png
                gene_name: IFNA14
               theta_stop: 0.100 
                    nperm: 950000 
                     p_ks: 0.0016 
        ci_ks_bounds_left: 0.0015 
       ci_ks_bounds_right: 0.0017 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.0018 
     ci_joint_bounds_left: 0.0018 
    ci_joint_bounds_right: 0.0019 

Current progress: 68 percent done.
IFNA16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.061858e-02	ci left: 7.750931e-01	ci right 7.913416e-01	k: 7833	n:10000
Cons ci ratio: 4.133735e-02	ci left: 4.635730e-01	ci right 4.832425e-01	k: 4734	n:10000
KS ci ratio: 5.852375e-02	ci left: 3.005450e-01	ci right 3.187660e-01	k: 3096	n:10000
IFNA16   10000 perm   1 sec   (7138 perm/sec)   p_kst 3.096000e-01   p_cons 4.734000e-01   p_joint 7.833000e-01

Outputting figure to mutsig2_images.part000000000083/IFNA16.2_574_10000_0.3096_0.4734_0.7833.png
                gene_name: IFNA16
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.79 

Current progress: 70 percent done.
IFNA8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.751719e-02	ci left: 2.435138e-01	ci right 2.606309e-01	k: 2520	n:10000
Cons ci ratio: 1.755337e-02	ci left: 8.255431e-01	ci right 8.402624e-01	k: 8330	n:10000
KS ci ratio: 1.413621e-01	ci left: 6.633192e-02	ci right 7.651945e-02	k: 713	n:10000
IFNA8   10000 perm   1 sec   (7148 perm/sec)   p_kst 7.130000e-02   p_cons 8.330000e-01   p_joint 2.520000e-01

Joint ci ratio: 2.556594e-02	ci left: 5.333626e-01	ci right 5.472257e-01	k: 10806	n:20000
Cons ci ratio: 1.348826e-02	ci left: 8.030276e-01	ci right 8.139826e-01	k: 16171	n:20000
KS ci ratio: 9.891973e-02	ci left: 6.918775e-02	ci right 7.643704e-02	k: 1455	n:20000
IFNA8   20000 perm   3 sec   (6233 perm/sec)   p_kst 7.275000e-02   p_cons 8.085500e-01   p_joint 5.403000e-01

Outputting figure to mutsig2_images.part000000000083/IFNA8.2_574_20000_0.07275_0.80855_0.5403.png
                gene_name: IFNA8
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.073 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.076 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 72 percent done.
IFNAR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.446268e-02	ci left: 7.107838e-01	ci right 7.284881e-01	k: 7197	n:10000
KS ci ratio: 3.321031e-02	ci left: 5.723604e-01	ci right 5.917917e-01	k: 5821	n:10000
IFNAR1   10000 perm   2 sec   (6527 perm/sec)   p_kst 5.821000e-01   p_cons 7.197000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000083/IFNAR1.2_1718_10000_0.5821_0.7197_1.png
                gene_name: IFNAR1
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
IFNB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.925322e-02	ci left: 3.781344e-01	ci right 3.973310e-01	k: 3877	n:10000
Cons ci ratio: 4.091696e-02	ci left: 4.686667e-01	ci right 4.883458e-01	k: 4785	n:10000
KS ci ratio: 1.597330e-01	ci left: 5.224686e-02	ci right 6.141345e-02	k: 567	n:10000
IFNB1   10000 perm   1 sec   (6973 perm/sec)   p_kst 5.670000e-02   p_cons 4.785000e-01   p_joint 3.877000e-01

Joint ci ratio: 2.383631e-02	ci left: 5.679631e-01	ci right 5.817151e-01	k: 11497	n:20000
Cons ci ratio: 2.866961e-02	ci left: 4.761523e-01	ci right 4.900526e-01	k: 9662	n:20000
KS ci ratio: 1.140188e-01	ci left: 5.260997e-02	ci right 5.901994e-02	k: 1115	n:20000
IFNB1   20000 perm   3 sec   (6131 perm/sec)   p_kst 5.575000e-02   p_cons 4.831000e-01   p_joint 5.748500e-01

Joint ci ratio: 1.968050e-02	ci left: 5.637737e-01	ci right 5.750129e-01	k: 17082	n:30000
Cons ci ratio: 2.347183e-02	ci left: 4.760978e-01	ci right 4.874390e-01	k: 14453	n:30000
KS ci ratio: 9.309663e-02	ci left: 5.319646e-02	ci right 5.842331e-02	k: 1673	n:30000
IFNB1   30000 perm   5 sec   (5837 perm/sec)   p_kst 5.576667e-02   p_cons 4.817667e-01   p_joint 5.694000e-01

Outputting figure to mutsig2_images.part000000000083/IFNB1.2_568_30000_0.055767_0.48177_0.5694.png
                gene_name: IFNB1
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.056 
        ci_ks_bounds_left: 0.053 
       ci_ks_bounds_right: 0.058 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 78 percent done.
IFT20
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 80 percent done.
IFT57
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.912367e-02	ci left: 6.348262e-01	ci right 6.536897e-01	k: 6443	n:10000
KS ci ratio: 4.498665e-02	ci left: 4.217637e-01	ci right 4.412762e-01	k: 4315	n:10000
IFT57   10000 perm   2 sec   (6572 perm/sec)   p_kst 4.315000e-01   p_cons 6.443000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000083/IFT57.2_1334_10000_0.4315_0.6443_1.png
                gene_name: IFT57
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
IGBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.094934e-03	ci left: 9.870846e-01	ci right 9.912230e-01	k: 9893	n:10000
Cons ci ratio: 3.538873e-02	ci left: 5.410874e-01	ci right 5.606829e-01	k: 5509	n:10000
KS ci ratio: 2.722332e-02	ci left: 6.653172e-01	ci right 6.837810e-01	k: 6746	n:10000
IGBP1   10000 perm   2 sec   (5872 perm/sec)   p_kst 6.746000e-01   p_cons 5.509000e-01   p_joint 9.893000e-01

Outputting figure to mutsig2_images.part000000000083/IGBP1.2_1044_10000_0.6746_0.5509_0.9893.png
                gene_name: IGBP1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 85 percent done.
IGFBP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.013191e-03	ci left: 9.813449e-01	ci right 9.863675e-01	k: 9840	n:10000
Cons ci ratio: 2.169017e-02	ci left: 7.571705e-01	ci right 7.738746e-01	k: 7656	n:10000
KS ci ratio: 6.698429e-02	ci left: 2.464796e-01	ci right 2.636633e-01	k: 2550	n:10000
IGFBP3   10000 perm   1 sec   (7018 perm/sec)   p_kst 2.550000e-01   p_cons 7.656000e-01   p_joint 9.840000e-01

Outputting figure to mutsig2_images.part000000000083/IGFBP3.2_910_10000_0.255_0.7656_0.984.png
                gene_name: IGFBP3
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 88 percent done.
IGFBP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.073045e-02	ci left: 2.850816e-01	ci right 3.030385e-01	k: 2940	n:10000
Cons ci ratio: 4.277403e-02	ci left: 4.466014e-01	ci right 4.662240e-01	k: 4564	n:10000
KS ci ratio: 9.711277e-02	ci left: 1.332547e-01	ci right 1.469557e-01	k: 1400	n:10000
IGFBP6   10000 perm   1 sec   (7116 perm/sec)   p_kst 1.400000e-01   p_cons 4.564000e-01   p_joint 2.940000e-01

Outputting figure to mutsig2_images.part000000000083/IGFBP6.2_739_10000_0.14_0.4564_0.294.png
                gene_name: IGFBP6
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 90 percent done.
IGFL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.856681e-02	ci left: 1.564968e-01	ci right 1.710996e-01	k: 1637	n:10000
Cons ci ratio: 6.458655e-02	ci left: 2.604260e-01	ci right 2.779087e-01	k: 2691	n:10000
KS ci ratio: 1.232929e-01	ci left: 8.611301e-02	ci right 9.752607e-02	k: 917	n:10000
IGFL3   10000 perm   1 sec   (7497 perm/sec)   p_kst 9.170000e-02   p_cons 2.691000e-01   p_joint 1.637000e-01

Joint ci ratio: 5.848845e-02	ci left: 1.780085e-01	ci right 1.887837e-01	k: 3667	n:20000
Cons ci ratio: 4.590903e-02	ci left: 2.609773e-01	ci right 2.732904e-01	k: 5342	n:20000
KS ci ratio: 8.906518e-02	ci left: 8.435383e-02	ci right 9.226634e-02	k: 1765	n:20000
IGFL3   20000 perm   3 sec   (6208 perm/sec)   p_kst 8.825000e-02   p_cons 2.671000e-01   p_joint 1.833500e-01

Outputting figure to mutsig2_images.part000000000083/IGFL3.2_394_20000_0.08825_0.2671_0.18335.png
                gene_name: IGFL3
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.088 
        ci_ks_bounds_left: 0.084 
       ci_ks_bounds_right: 0.092 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 92 percent done.
IGLL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.249207e-02	ci left: 5.829942e-01	ci right 6.023518e-01	k: 5927	n:10000
Cons ci ratio: 3.344290e-02	ci left: 5.689506e-01	ci right 5.884036e-01	k: 5787	n:10000
KS ci ratio: 5.376300e-02	ci left: 3.376659e-01	ci right 3.564232e-01	k: 3470	n:10000
IGLL1   10000 perm   2 sec   (6411 perm/sec)   p_kst 3.470000e-01   p_cons 5.787000e-01   p_joint 5.927000e-01

Outputting figure to mutsig2_images.part000000000083/IGLL1.2_654_10000_0.347_0.5787_0.5927.png
                gene_name: IGLL1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 95 percent done.
IGSF5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.956981e-02	ci left: 6.277880e-01	ci right 6.467320e-01	k: 6373	n:10000
Cons ci ratio: 3.188335e-02	ci left: 5.921269e-01	ci right 6.114137e-01	k: 6018	n:10000
KS ci ratio: 4.137882e-02	ci left: 4.630737e-01	ci right 4.827421e-01	k: 4729	n:10000
IGSF5   10000 perm   2 sec   (6072 perm/sec)   p_kst 4.729000e-01   p_cons 6.018000e-01   p_joint 6.373000e-01

Outputting figure to mutsig2_images.part000000000083/IGSF5.2_1260_10000_0.4729_0.6018_0.6373.png
                gene_name: IGSF5
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 98 percent done.
IGSF6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.699097e-02	ci left: 5.190593e-01	ci right 5.387238e-01	k: 5289	n:10000
Cons ci ratio: 5.834631e-02	ci left: 3.018342e-01	ci right 3.200760e-01	k: 3109	n:10000
KS ci ratio: 4.209097e-02	ci left: 4.545866e-01	ci right 4.742341e-01	k: 4644	n:10000
IGSF6   10000 perm   1 sec   (6902 perm/sec)   p_kst 4.644000e-01   p_cons 3.109000e-01   p_joint 5.289000e-01

Outputting figure to mutsig2_images.part000000000083/IGSF6.2_750_10000_0.4644_0.3109_0.5289.png
                gene_name: IGSF6
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000083
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 83 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1705>
Subject: Job 8004176: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1705>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000084> was used as the working directory.
Started at Sun Nov 11 15:06:54 2012
Results reported at Sun Nov 11 15:14:30 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000084.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000084.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 84  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000084.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    481.96 sec.
    Max Memory :      4755 MB
    Max Swap   :      7067 MB

    Max Processes  :         7
    Max Threads    :        60

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
84
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 84
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 84: processing genes 7510 - 7599
Calculating significance of each gene.
Using projection method.
7510	IGSF8	1
7511	IGSF9	9.770898e-01
7512	IGSF9B	1.718296e-01
7513	IHH	5.924580e-01
7514	IK	6.731735e-01
7515	IKBIP	5.352558e-01
7516	IKBKAP	7.919852e-01
7517	IKBKB	7.276330e-01
7518	IKBKE	4.652387e-01
7519	IKZF1	4.566157e-01
7520	IKZF2	4.680510e-01
7521	IKZF3	3.167271e-01
7522	IKZF4	6.237569e-01
7523	IKZF5	4.532293e-01
7524	IL10	9.880263e-02
7525	IL10RA	6.508706e-01
7526	IL10RB	1
7527	IL11RA	6.815799e-01
7528	IL12A	4.284644e-01
7529	IL12B	1.831353e-01
7530	IL12RB1	4.543263e-01
7531	IL12RB2	7.233449e-01
7532	IL13	1
7533	IL13RA1	4.405635e-01
7534	IL13RA2	5.031848e-01
7535	IL15	1
7536	IL15RA	1
7537	IL16	9.755688e-01
7538	IL17A	2.098402e-01
7539	IL17B	1
7540	IL17C	1
7541	IL17D	1
7542	IL17F	3.989536e-02
7543	IL17RA	8.032017e-02
7544	IL17RB	1
7545	IL17RC	9.530229e-01
7546	IL17RD	1
7547	IL17RE	7.282015e-01
7548	IL17REL	5.851040e-01
7549	IL18	1
7550	IL18BP	1
7551	IL18R1	5.247092e-01
7552	IL18RAP	2.401214e-01
7553	IL19	2.895118e-01
7554	IL1A	5.338353e-01
7555	IL1B	6.610358e-01
7556	IL1F10	1
7557	IL1F5	1.726421e-01
7558	IL1F6	1
7559	IL1F7	1.430552e-01
7560	IL1F8	1
7561	IL1F9	1
7562	IL1R1	8.424113e-01
7563	IL1R2	1
7564	IL1RAP	6.073038e-01
7565	IL1RAPL1	8.717658e-01
7566	IL1RAPL2	4.525031e-02
7567	IL1RL1	2.430475e-01
7568	IL1RL2	7.446408e-01
7569	IL1RN	1
7570	IL2	1
7571	IL20	1
7572	IL20RA	1
7573	IL20RB	2.400199e-01
7574	IL21	3.667105e-01
7575	IL21R	5.457322e-01
7576	IL22	2.184461e-01
7577	IL22RA1	1
7578	IL22RA2	3.843529e-01
7579	IL23A	1
7580	IL23R	6.919053e-01
7581	IL24	1
7582	IL25	1
7583	IL26	1
7584	IL27	3.398382e-01
7585	IL27RA	7.651443e-01
7586	IL28A	1
7587	IL28B	9.481687e-02
7588	IL28RA	7.931839e-01
7589	IL29	1
7590	IL2RA	1
7591	IL2RB	5.262124e-01
7592	IL2RG	5.133106e-01
7593	IL3	4.019818e-01
7594	IL31	3.702441e-01
7595	IL31RA	7.983320e-01
7596	IL32	4.031711e-01
7597	IL33	4.361131e-01
7598	IL34	1
7599	IL3RA	1
Done

Running MutSig 2:
Scatter job 84: processing genes 7510 - 7599
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
IGSF9B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.787107e-02	ci left: 3.916729e-01	ci right 4.109846e-01	k: 4013	n:10000
Cons ci ratio: 1.932481e-02	ci left: 7.965889e-01	ci right 8.122334e-01	k: 8045	n:10000
KS ci ratio: 6.714328e-02	ci left: 2.455898e-01	ci right 2.627536e-01	k: 2541	n:10000
IGSF9B   10000 perm   3 sec   (3919 perm/sec)   p_kst 2.541000e-01   p_cons 8.045000e-01   p_joint 4.013000e-01

Outputting figure to mutsig2_images.part000000000084/IGSF9B.11_4126_10000_0.2541_0.8045_0.4013.png
                gene_name: IGSF9B
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 2 percent done.
IL1RAPL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.648848e-02	ci left: 6.773041e-01	ci right 6.955872e-01	k: 6865	n:10000
Cons ci ratio: 5.753939e-02	ci left: 3.077853e-01	ci right 3.261214e-01	k: 3169	n:10000
KS ci ratio: 2.756493e-02	ci left: 6.597794e-01	ci right 6.783220e-01	k: 6691	n:10000
IL1RAPL1   10000 perm   2 sec   (5205 perm/sec)   p_kst 6.691000e-01   p_cons 3.169000e-01   p_joint 6.865000e-01

Outputting figure to mutsig2_images.part000000000084/IL1RAPL1.8_2131_10000_0.6691_0.3169_0.6865.png
                gene_name: IL1RAPL1
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 5 percent done.
IL17RA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.550376e-02	ci left: 3.234649e-01	ci right 3.420327e-01	k: 3327	n:10000
Cons ci ratio: 8.764072e-02	ci left: 1.593447e-01	ci right 1.740500e-01	k: 1666	n:10000
KS ci ratio: 5.992136e-02	ci left: 2.906312e-01	ci right 3.086857e-01	k: 2996	n:10000
IL17RA   10000 perm   2 sec   (5128 perm/sec)   p_kst 2.996000e-01   p_cons 1.666000e-01   p_joint 3.327000e-01

Outputting figure to mutsig2_images.part000000000084/IL17RA.6_2653_10000_0.2996_0.1666_0.3327.png
                gene_name: IL17RA
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 8 percent done.
IL1RAPL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.705609e-02	ci left: 6.680363e-01	ci right 6.864603e-01	k: 6773	n:10000
Cons ci ratio: 2.229991e-02	ci left: 7.469526e-01	ci right 7.638984e-01	k: 7555	n:10000
KS ci ratio: 4.555035e-02	ci left: 4.156828e-01	ci right 4.351607e-01	k: 4254	n:10000
IL1RAPL2   10000 perm   2 sec   (5511 perm/sec)   p_kst 4.254000e-01   p_cons 7.555000e-01   p_joint 6.773000e-01

Outputting figure to mutsig2_images.part000000000084/IL1RAPL2.6_2101_10000_0.4254_0.7555_0.6773.png
                gene_name: IL1RAPL2
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 10 percent done.
IGSF8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.749929e-02	ci left: 2.436126e-01	ci right 2.607320e-01	k: 2521	n:10000
Cons ci ratio: 9.522390e-02	ci left: 1.379571e-01	ci right 1.518505e-01	k: 1448	n:10000
KS ci ratio: 5.600744e-02	ci left: 3.194942e-01	ci right 3.380056e-01	k: 3287	n:10000
IGSF8   10000 perm   2 sec   (5591 perm/sec)   p_kst 3.287000e-01   p_cons 1.448000e-01   p_joint 2.521000e-01

Outputting figure to mutsig2_images.part000000000084/IGSF8.5_1866_10000_0.3287_0.1448_0.2521.png
                gene_name: IGSF8
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 12 percent done.
IL16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.062465e-02	ci left: 7.749918e-01	ci right 7.912430e-01	k: 7832	n:10000
Cons ci ratio: 1.921421e-02	ci left: 7.984155e-01	ci right 8.140057e-01	k: 8063	n:10000
KS ci ratio: 2.808310e-02	ci left: 6.514250e-01	ci right 6.700813e-01	k: 6608	n:10000
IL16   10000 perm   2 sec   (4697 perm/sec)   p_kst 6.608000e-01   p_cons 8.063000e-01   p_joint 7.832000e-01

Outputting figure to mutsig2_images.part000000000084/IL16.5_4071_10000_0.6608_0.8063_0.7832.png
                gene_name: IL16
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 15 percent done.
IGSF9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.538379e-02	ci left: 2.556770e-01	ci right 2.730605e-01	k: 2643	n:10000
Cons ci ratio: 1.131226e-01	ci left: 1.011041e-01	ci right 1.133258e-01	k: 1071	n:10000
KS ci ratio: 4.609487e-02	ci left: 4.099023e-01	ci right 4.293446e-01	k: 4196	n:10000
IGSF9   10000 perm   2 sec   (4843 perm/sec)   p_kst 4.196000e-01   p_cons 1.071000e-01   p_joint 2.643000e-01

Joint ci ratio: 5.108424e-02	ci left: 2.216059e-01	ci right 2.332735e-01	k: 4548	n:20000
Cons ci ratio: 7.949380e-02	ci left: 1.040745e-01	ci right 1.127398e-01	k: 2167	n:20000
KS ci ratio: 3.280192e-02	ci left: 4.097052e-01	ci right 4.234190e-01	k: 8331	n:20000
IGSF9   20000 perm   5 sec   (4400 perm/sec)   p_kst 4.165500e-01   p_cons 1.083500e-01   p_joint 2.274000e-01

Outputting figure to mutsig2_images.part000000000084/IGSF9.4_3620_20000_0.41655_0.10835_0.2274.png
                gene_name: IGSF9
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 18 percent done.
IKBKAP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.547591e-02	ci left: 4.164802e-01	ci right 4.359628e-01	k: 4262	n:10000
Cons ci ratio: 9.038799e-02	ci left: 1.510978e-01	ci right 1.655018e-01	k: 1582	n:10000
KS ci ratio: 3.332647e-02	ci left: 5.706554e-01	ci right 5.900977e-01	k: 5804	n:10000
IKBKAP   10000 perm   2 sec   (5098 perm/sec)   p_kst 5.804000e-01   p_cons 1.582000e-01   p_joint 4.262000e-01

Outputting figure to mutsig2_images.part000000000084/IKBKAP.4_4143_10000_0.5804_0.1582_0.4262.png
                gene_name: IKBKAP
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 20 percent done.
IL12RB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.796775e-02	ci left: 2.410427e-01	ci right 2.581034e-01	k: 2495	n:10000
Cons ci ratio: 2.206259e-01	ci left: 2.721699e-02	ci right 3.406005e-02	k: 305	n:10000
KS ci ratio: 2.702516e-02	ci left: 6.685399e-01	ci right 6.869564e-01	k: 6778	n:10000
IL12RB2   10000 perm   2 sec   (5218 perm/sec)   p_kst 6.778000e-01   p_cons 3.050000e-02   p_joint 2.495000e-01

Joint ci ratio: 6.355757e-02	ci left: 1.546971e-01	ci right 1.649020e-01	k: 3195	n:20000
Cons ci ratio: 1.539460e-01	ci left: 2.897822e-02	ci right 3.385926e-02	k: 627	n:20000
KS ci ratio: 1.858950e-02	ci left: 6.832866e-01	ci right 6.961582e-01	k: 13795	n:20000
IL12RB2   20000 perm   4 sec   (4675 perm/sec)   p_kst 6.897500e-01   p_cons 3.135000e-02   p_joint 1.597500e-01

Joint ci ratio: 4.676961e-02	ci left: 1.852770e-01	ci right 1.941832e-01	k: 5691	n:30000
Cons ci ratio: 1.227034e-01	ci left: 3.087786e-02	ci right 3.494658e-02	k: 986	n:30000
KS ci ratio: 1.552160e-02	ci left: 6.747879e-01	ci right 6.853772e-01	k: 20403	n:30000
IL12RB2   30000 perm   7 sec   (4498 perm/sec)   p_kst 6.801000e-01   p_cons 3.286667e-02   p_joint 1.897000e-01

Joint ci ratio: 3.999826e-02	ci left: 1.897377e-01	ci right 1.975068e-01	k: 7744	n:40000
Cons ci ratio: 1.082803e-01	ci left: 3.000463e-02	ci right 3.346379e-02	k: 1268	n:40000
KS ci ratio: 1.346071e-02	ci left: 6.749013e-01	ci right 6.840726e-01	k: 27180	n:40000
IL12RB2   40000 perm   9 sec   (4376 perm/sec)   p_kst 6.795000e-01   p_cons 3.170000e-02   p_joint 1.936000e-01

Joint ci ratio: 3.896806e-02	ci left: 1.650300e-01	ci right 1.716086e-01	k: 8415	n:50000
Cons ci ratio: 9.648066e-02	ci left: 3.041594e-02	ci right 3.351871e-02	k: 1597	n:50000
KS ci ratio: 1.212876e-02	ci left: 6.721587e-01	ci right 6.803809e-01	k: 33814	n:50000
IL12RB2   50000 perm   12 sec   (4280 perm/sec)   p_kst 6.762800e-01   p_cons 3.194000e-02   p_joint 1.683000e-01

Outputting figure to mutsig2_images.part000000000084/IL12RB2.4_2649_50000_0.67628_0.03194_0.1683.png
                gene_name: IL12RB2
               theta_stop: 0.096 
                    nperm: 50000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.032 
      ci_cons_bounds_left: 0.030 
     ci_cons_bounds_right: 0.034 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.17 

Current progress: 22 percent done.
IL18RAP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.510363e-02	ci left: 5.450946e-01	ci right 5.646734e-01	k: 5549	n:10000
Cons ci ratio: 7.128045e-02	ci left: 2.238545e-01	ci right 2.405018e-01	k: 2321	n:10000
KS ci ratio: 2.919359e-02	ci left: 6.337201e-01	ci right 6.525965e-01	k: 6432	n:10000
IL18RAP   10000 perm   2 sec   (5636 perm/sec)   p_kst 6.432000e-01   p_cons 2.321000e-01   p_joint 5.549000e-01

Outputting figure to mutsig2_images.part000000000084/IL18RAP.4_1840_10000_0.6432_0.2321_0.5549.png
                gene_name: IL18RAP
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.56 

Current progress: 25 percent done.
IKBKE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.448693e-02	ci left: 7.103801e-01	ci right 7.280920e-01	k: 7193	n:10000
Cons ci ratio: 4.445889e-02	ci left: 4.275470e-01	ci right 4.470895e-01	k: 4373	n:10000
KS ci ratio: 1.377760e-02	ci left: 8.838059e-01	ci right 8.961658e-01	k: 8901	n:10000
IKBKE   10000 perm   2 sec   (6112 perm/sec)   p_kst 8.901000e-01   p_cons 4.373000e-01   p_joint 7.193000e-01

Outputting figure to mutsig2_images.part000000000084/IKBKE.3_2231_10000_0.8901_0.4373_0.7193.png
                gene_name: IKBKE
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 28 percent done.
IKZF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.932725e-02	ci left: 6.316085e-01	ci right 6.505093e-01	k: 6411	n:10000
KS ci ratio: 2.026603e-02	ci left: 7.809707e-01	ci right 7.970605e-01	k: 7891	n:10000
IKZF3   10000 perm   2 sec   (6185 perm/sec)   p_kst 7.891000e-01   p_cons 6.411000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000084/IKZF3.3_1562_10000_0.7891_0.6411_1.png
                gene_name: IKZF3
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 30 percent done.
IL12B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.051572e-03	ci left: 9.555548e-01	ci right 9.633747e-01	k: 9596	n:10000
KS ci ratio: 3.136703e-02	ci left: 5.999577e-01	ci right 6.191784e-01	k: 6096	n:10000
IL12B   10000 perm   2 sec   (6461 perm/sec)   p_kst 6.096000e-01   p_cons 9.596000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000084/IL12B.3_1011_10000_0.6096_0.9596_1.png
                gene_name: IL12B
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 32 percent done.
IL12RB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.963916e-02	ci left: 3.744525e-01	ci right 3.936151e-01	k: 3840	n:10000
Cons ci ratio: 1.159567e-02	ci left: 9.140975e-01	ci right 9.248566e-01	k: 9196	n:10000
KS ci ratio: 6.928093e-02	ci left: 2.340268e-01	ci right 2.509234e-01	k: 2424	n:10000
IL12RB1   10000 perm   2 sec   (5689 perm/sec)   p_kst 2.424000e-01   p_cons 9.196000e-01   p_joint 3.840000e-01

Outputting figure to mutsig2_images.part000000000084/IL12RB1.3_2186_10000_0.2424_0.9196_0.384.png
                gene_name: IL12RB1
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 35 percent done.
IL17F
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.177040e-02	ci left: 5.938334e-01	ci right 6.131063e-01	k: 6035	n:10000
Cons ci ratio: 2.970424e-02	ci left: 6.256770e-01	ci right 6.446442e-01	k: 6352	n:10000
KS ci ratio: 4.478554e-02	ci left: 4.239572e-01	ci right 4.434814e-01	k: 4337	n:10000
IL17F   10000 perm   2 sec   (6660 perm/sec)   p_kst 4.337000e-01   p_cons 6.352000e-01   p_joint 6.035000e-01

Outputting figure to mutsig2_images.part000000000084/IL17F.3_504_10000_0.4337_0.6352_0.6035.png
                gene_name: IL17F
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 38 percent done.
IL1R2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.903571e-02	ci left: 8.013591e-01	ci right 8.168604e-01	k: 8092	n:10000
Cons ci ratio: 9.644065e-03	ci left: 9.382754e-01	ci right 9.474645e-01	k: 9430	n:10000
KS ci ratio: 4.188850e-02	ci left: 4.569827e-01	ci right 4.766367e-01	k: 4668	n:10000
IL1R2   10000 perm   2 sec   (6168 perm/sec)   p_kst 4.668000e-01   p_cons 9.430000e-01   p_joint 8.092000e-01

Outputting figure to mutsig2_images.part000000000084/IL1R2.3_1229_10000_0.4668_0.943_0.8092.png
                gene_name: IL1R2
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 40 percent done.
IL1RL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.030657e-02	ci left: 3.681846e-01	ci right 3.872867e-01	k: 3777	n:10000
Cons ci ratio: 9.434992e-02	ci left: 1.402112e-01	ci right 1.541950e-01	k: 1471	n:10000
KS ci ratio: 7.485634e-03	ci left: 9.611050e-01	ci right 9.684210e-01	k: 9649	n:10000
IL1RL1   10000 perm   2 sec   (5865 perm/sec)   p_kst 9.649000e-01   p_cons 1.471000e-01   p_joint 3.777000e-01

Outputting figure to mutsig2_images.part000000000084/IL1RL1.3_1728_10000_0.9649_0.1471_0.3777.png
                gene_name: IL1RL1
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 42 percent done.
IL21R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.615832e-02	ci left: 8.477417e-01	ci right 8.616509e-01	k: 8548	n:10000
Cons ci ratio: 3.802803e-02	ci left: 5.052515e-01	ci right 5.249398e-01	k: 5151	n:10000
KS ci ratio: 1.906036e-02	ci left: 8.009530e-01	ci right 8.164667e-01	k: 8088	n:10000
IL21R   10000 perm   2 sec   (6069 perm/sec)   p_kst 8.088000e-01   p_cons 5.151000e-01   p_joint 8.548000e-01

Outputting figure to mutsig2_images.part000000000084/IL21R.3_1649_10000_0.8088_0.5151_0.8548.png
                gene_name: IL21R
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 45 percent done.
IK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.323853e-02	ci left: 1.431522e-01	ci right 1.572522e-01	k: 1501	n:10000
Cons ci ratio: 2.596067e-02	ci left: 6.859711e-01	ci right 7.041151e-01	k: 6951	n:10000
KS ci ratio: 1.123610e-01	ci left: 1.023714e-01	ci right 1.146577e-01	k: 1084	n:10000
IK   10000 perm   2 sec   (6191 perm/sec)   p_kst 1.084000e-01   p_cons 6.951000e-01   p_joint 1.501000e-01

Joint ci ratio: 6.658401e-02	ci left: 1.427599e-01	ci right 1.526427e-01	k: 2953	n:20000
Cons ci ratio: 1.827094e-02	ci left: 6.906783e-01	ci right 7.034644e-01	k: 13942	n:20000
KS ci ratio: 8.047557e-02	ci left: 1.017662e-01	ci right 1.103488e-01	k: 2120	n:20000
IK   20000 perm   4 sec   (5486 perm/sec)   p_kst 1.060000e-01   p_cons 6.971000e-01   p_joint 1.476500e-01

Outputting figure to mutsig2_images.part000000000084/IK.2_1754_20000_0.106_0.6971_0.14765.png
                gene_name: IK
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 48 percent done.
IKBIP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.553173e-02	ci left: 4.158821e-01	ci right 4.353612e-01	k: 4256	n:10000
KS ci ratio: 3.576213e-02	ci left: 5.358791e-01	ci right 5.554943e-01	k: 5457	n:10000
IKBIP   10000 perm   2 sec   (6148 perm/sec)   p_kst 5.457000e-01   p_cons 4.256000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000084/IKBIP.2_1906_10000_0.5457_0.4256_1.png
                gene_name: IKBIP
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
IKBKB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.167540e-01	ci left: 9.535564e-02	ci right 1.072778e-01	k: 1012	n:10000
Cons ci ratio: 1.414085e-02	ci left: 8.784825e-01	ci right 8.910923e-01	k: 8849	n:10000
KS ci ratio: 1.682216e-01	ci left: 4.715334e-02	ci right 5.591026e-02	k: 514	n:10000
IKBKB   10000 perm   2 sec   (5959 perm/sec)   p_kst 5.140000e-02   p_cons 8.849000e-01   p_joint 1.012000e-01

Joint ci ratio: 3.055493e-02	ci left: 4.444858e-01	ci right 4.583284e-01	k: 9028	n:20000
Cons ci ratio: 9.951286e-03	ci left: 8.813617e-01	ci right 8.902258e-01	k: 17717	n:20000
KS ci ratio: 1.187105e-01	ci left: 4.862308e-02	ci right 5.480807e-02	k: 1033	n:20000
IKBKB   20000 perm   4 sec   (5271 perm/sec)   p_kst 5.165000e-02   p_cons 8.858500e-01   p_joint 4.514000e-01

Joint ci ratio: 7.186231e-02	ci left: 8.698149e-02	ci right 9.349811e-02	k: 2706	n:30000
Cons ci ratio: 8.201662e-03	ci left: 8.802549e-01	ci right 8.875372e-01	k: 26518	n:30000
KS ci ratio: 9.669752e-02	ci left: 4.941668e-02	ci right 5.447054e-02	k: 1557	n:30000
IKBKB   30000 perm   6 sec   (5000 perm/sec)   p_kst 5.190000e-02   p_cons 8.839333e-01   p_joint 9.020000e-02

Outputting figure to mutsig2_images.part000000000084/IKBKB.2_2355_30000_0.0519_0.88393_0.0902.png
                gene_name: IKBKB
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.052 
        ci_ks_bounds_left: 0.049 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.090 
     ci_joint_bounds_left: 0.087 
    ci_joint_bounds_right: 0.093 

Current progress: 52 percent done.
IKZF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.004954e-02	ci left: 9.335086e-01	ci right 9.430341e-01	k: 9384	n:10000
Cons ci ratio: 3.145274e-02	ci left: 5.986524e-01	ci right 6.178845e-01	k: 6083	n:10000
KS ci ratio: 4.950306e-02	ci left: 3.757461e-01	ci right 3.949208e-01	k: 3853	n:10000
IKZF1   10000 perm   2 sec   (6341 perm/sec)   p_kst 3.853000e-01   p_cons 6.083000e-01   p_joint 9.384000e-01

Outputting figure to mutsig2_images.part000000000084/IKZF1.2_1588_10000_0.3853_0.6083_0.9384.png
                gene_name: IKZF1
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 55 percent done.
IKZF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.461276e-02	ci left: 4.258518e-01	ci right 4.453858e-01	k: 4356	n:10000
Cons ci ratio: 2.326663e-01	ci left: 2.438298e-02	ci right 3.089610e-02	k: 275	n:10000
KS ci ratio: 5.318683e-02	ci left: 3.425342e-01	ci right 3.613521e-01	k: 3519	n:10000
IKZF2   10000 perm   2 sec   (6351 perm/sec)   p_kst 3.519000e-01   p_cons 2.750000e-02   p_joint 4.356000e-01

Joint ci ratio: 3.136659e-02	ci left: 4.315576e-01	ci right 4.453603e-01	k: 8769	n:20000
Cons ci ratio: 1.578823e-01	ci left: 2.753511e-02	ci right 3.230286e-02	k: 597	n:20000
KS ci ratio: 3.759633e-02	ci left: 3.454775e-01	ci right 3.587655e-01	k: 7042	n:20000
IKZF2   20000 perm   4 sec   (5620 perm/sec)   p_kst 3.521000e-01   p_cons 2.985000e-02   p_joint 4.384500e-01

Joint ci ratio: 2.663982e-02	ci left: 4.135746e-01	ci right 4.247744e-01	k: 12575	n:30000
Cons ci ratio: 1.310347e-01	ci left: 2.706564e-02	ci right 3.089297e-02	k: 868	n:30000
KS ci ratio: 3.071407e-02	ci left: 3.464606e-01	ci right 3.573014e-01	k: 10556	n:30000
IKZF2   30000 perm   6 sec   (5322 perm/sec)   p_kst 3.518667e-01   p_cons 2.893333e-02   p_joint 4.191667e-01

Joint ci ratio: 2.303168e-02	ci left: 4.151567e-01	ci right 4.248549e-01	k: 16800	n:40000
Cons ci ratio: 1.127141e-01	ci left: 2.769335e-02	ci right 3.102544e-02	k: 1173	n:40000
KS ci ratio: 2.661812e-02	ci left: 3.468694e-01	ci right 3.562521e-01	k: 14062	n:40000
IKZF2   40000 perm   8 sec   (5116 perm/sec)   p_kst 3.515500e-01   p_cons 2.932500e-02   p_joint 4.200000e-01

Joint ci ratio: 2.442495e-02	ci left: 3.358273e-01	ci right 3.441513e-01	k: 16999	n:50000
Cons ci ratio: 1.007971e-01	ci left: 2.787818e-02	ci right 3.085680e-02	k: 1467	n:50000
KS ci ratio: 2.375975e-02	ci left: 3.482911e-01	ci right 3.566860e-01	k: 17624	n:50000
IKZF2   50000 perm   10 sec   (4962 perm/sec)   p_kst 3.524800e-01   p_cons 2.934000e-02   p_joint 3.399800e-01

Joint ci ratio: 4.360581e-02	ci left: 1.161057e-01	ci right 1.212979e-01	k: 7121	n:60000
Cons ci ratio: 9.251931e-02	ci left: 2.770436e-02	ci right 3.040811e-02	k: 1742	n:60000
KS ci ratio: 2.173002e-02	ci left: 3.478117e-01	ci right 3.554693e-01	k: 21098	n:60000
IKZF2   60000 perm   12 sec   (4834 perm/sec)   p_kst 3.516333e-01   p_cons 2.903333e-02   p_joint 1.186833e-01

Outputting figure to mutsig2_images.part000000000084/IKZF2.2_1609_60000_0.35163_0.029033_0.11868.png
                gene_name: IKZF2
               theta_stop: 0.093 
                    nperm: 60000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.029 
      ci_cons_bounds_left: 0.028 
     ci_cons_bounds_right: 0.030 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 57 percent done.
IKZF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.830139e-01	ci left: 3.198812e-03	ci right 5.902342e-03	k: 44	n:10000
Cons ci ratio: 7.677370e-01	ci left: 1.618501e-03	ci right 3.688296e-03	k: 25	n:10000
KS ci ratio: 4.643716e-02	ci left: 4.063151e-01	ci right 4.257338e-01	k: 4160	n:10000
IKZF4   10000 perm   2 sec   (6264 perm/sec)   p_kst 4.160000e-01   p_cons 2.500000e-03   p_joint 4.400000e-03

Joint ci ratio: 3.910091e-01	ci left: 4.024882e-03	ci right 6.023201e-03	k: 99	n:20000
Cons ci ratio: 5.327106e-01	ci left: 1.985643e-03	ci right 3.464850e-03	k: 53	n:20000
KS ci ratio: 3.267741e-02	ci left: 4.115507e-01	ci right 4.252731e-01	k: 8368	n:20000
IKZF4   20000 perm   4 sec   (5554 perm/sec)   p_kst 4.184000e-01   p_cons 2.650000e-03   p_joint 4.950000e-03

Joint ci ratio: 3.293414e-01	ci left: 3.927077e-03	ci right 5.504534e-03	k: 140	n:30000
Cons ci ratio: 4.376773e-01	ci left: 2.085372e-03	ci right 3.280854e-03	k: 79	n:30000
KS ci ratio: 2.676421e-02	ci left: 4.113124e-01	ci right 4.225037e-01	k: 12507	n:30000
IKZF4   30000 perm   6 sec   (5282 perm/sec)   p_kst 4.169000e-01   p_cons 2.633333e-03   p_joint 4.666667e-03

Joint ci ratio: 1.567185e-01	ci left: 1.419202e-02	ci right 1.662907e-02	k: 615	n:40000
Cons ci ratio: 1.849973e-01	ci left: 1.007253e-02	ci right 1.214936e-02	k: 443	n:40000
KS ci ratio: 2.315740e-02	ci left: 4.125111e-01	ci right 4.222009e-01	k: 16694	n:40000
IKZF4   40000 perm   8 sec   (5102 perm/sec)   p_kst 4.173500e-01   p_cons 1.107500e-02   p_joint 1.537500e-02

Joint ci ratio: 1.758539e-01	ci left: 8.974228e-03	ci right 1.072338e-02	k: 491	n:50000
Cons ci ratio: 1.676181e-01	ci left: 9.912512e-03	ci right 1.174495e-02	k: 540	n:50000
KS ci ratio: 2.071833e-02	ci left: 4.128928e-01	ci right 4.215568e-01	k: 20861	n:50000
IKZF4   50000 perm   10 sec   (4967 perm/sec)   p_kst 4.172200e-01   p_cons 1.080000e-02   p_joint 9.820000e-03

Joint ci ratio: 1.491373e-01	ci left: 1.053382e-02	ci right 1.224727e-02	k: 682	n:60000
Cons ci ratio: 1.518594e-01	ci left: 1.014873e-02	ci right 1.183241e-02	k: 658	n:60000
KS ci ratio: 1.898294e-02	ci left: 4.114860e-01	ci right 4.193888e-01	k: 24926	n:60000
IKZF4   60000 perm   12 sec   (4848 perm/sec)   p_kst 4.154333e-01   p_cons 1.096667e-02   p_joint 1.136667e-02

Joint ci ratio: 1.196005e-01	ci left: 1.420959e-02	ci right 1.603093e-02	k: 1057	n:70000
Cons ci ratio: 1.396639e-01	ci left: 1.035083e-02	ci right 1.191866e-02	k: 778	n:70000
KS ci ratio: 1.757865e-02	ci left: 4.116745e-01	ci right 4.189896e-01	k: 29073	n:70000
IKZF4   70000 perm   15 sec   (4724 perm/sec)   p_kst 4.153286e-01   p_cons 1.111429e-02   p_joint 1.510000e-02

Joint ci ratio: 1.165201e-01	ci left: 1.313655e-02	ci right 1.477397e-02	k: 1115	n:80000
Cons ci ratio: 1.315648e-01	ci left: 1.025248e-02	ci right 1.170831e-02	k: 877	n:80000
KS ci ratio: 1.645070e-02	ci left: 4.116949e-01	ci right 4.185362e-01	k: 33209	n:80000
IKZF4   80000 perm   17 sec   (4620 perm/sec)   p_kst 4.151125e-01   p_cons 1.096250e-02   p_joint 1.393750e-02

Joint ci ratio: 1.231455e-01	ci left: 1.044730e-02	ci right 1.182893e-02	k: 1001	n:90000
Cons ci ratio: 1.233324e-01	ci left: 1.041498e-02	ci right 1.179458e-02	k: 998	n:90000
KS ci ratio: 1.550073e-02	ci left: 4.121777e-01	ci right 4.186277e-01	k: 37386	n:90000
IKZF4   90000 perm   20 sec   (4528 perm/sec)   p_kst 4.154000e-01   p_cons 1.108889e-02   p_joint 1.112222e-02

Joint ci ratio: 1.165794e-01	ci left: 1.052783e-02	ci right 1.184076e-02	k: 1117	n:100000
Cons ci ratio: 1.170034e-01	ci left: 1.045014e-02	ci right 1.175845e-02	k: 1109	n:100000
KS ci ratio: 1.470107e-02	ci left: 4.124830e-01	ci right 4.186019e-01	k: 41554	n:100000
IKZF4   100000 perm   23 sec   (4440 perm/sec)   p_kst 4.155400e-01   p_cons 1.109000e-02   p_joint 1.117000e-02

Joint ci ratio: 1.173304e-01	ci left: 9.455717e-03	ci right 1.064306e-02	k: 1104	n:110000
Cons ci ratio: 1.118832e-01	ci left: 1.041851e-02	ci right 1.166201e-02	k: 1213	n:110000
KS ci ratio: 1.398797e-02	ci left: 4.136298e-01	ci right 4.194655e-01	k: 45820	n:110000
IKZF4   110000 perm   25 sec   (4359 perm/sec)   p_kst 4.165455e-01   p_cons 1.102727e-02   p_joint 1.003636e-02

Joint ci ratio: 1.063259e-01	ci left: 1.060414e-02	ci right 1.180299e-02	k: 1343	n:120000
Cons ci ratio: 1.064060e-01	ci left: 1.058791e-02	ci right 1.178589e-02	k: 1341	n:120000
KS ci ratio: 1.338111e-02	ci left: 4.141665e-01	ci right 4.197542e-01	k: 50035	n:120000
IKZF4   120000 perm   28 sec   (4282 perm/sec)   p_kst 4.169583e-01   p_cons 1.117500e-02   p_joint 1.119167e-02

Joint ci ratio: 1.058167e-01	ci left: 9.893077e-03	ci right 1.100585e-02	k: 1357	n:130000
Cons ci ratio: 1.021901e-01	ci left: 1.062002e-02	ci right 1.177117e-02	k: 1454	n:130000
KS ci ratio: 1.285995e-02	ci left: 4.141333e-01	ci right 4.195012e-01	k: 54186	n:130000
IKZF4   130000 perm   31 sec   (4208 perm/sec)   p_kst 4.168154e-01   p_cons 1.118462e-02   p_joint 1.043846e-02

Joint ci ratio: 1.019486e-01	ci left: 9.916950e-03	ci right 1.098919e-02	k: 1462	n:140000
Cons ci ratio: 9.878971e-02	ci left: 1.057170e-02	ci right 1.167726e-02	k: 1556	n:140000
KS ci ratio: 1.239293e-02	ci left: 4.142013e-01	ci right 4.193736e-01	k: 58350	n:140000
IKZF4   140000 perm   34 sec   (4137 perm/sec)   p_kst 4.167857e-01   p_cons 1.111429e-02   p_joint 1.044286e-02

Joint ci ratio: 9.510082e-02	ci left: 1.066706e-02	ci right 1.173862e-02	k: 1679	n:150000
Cons ci ratio: 9.510082e-02	ci left: 1.066706e-02	ci right 1.173862e-02	k: 1679	n:150000
KS ci ratio: 1.196744e-02	ci left: 4.145031e-01	ci right 4.195001e-01	k: 62550	n:150000
IKZF4   150000 perm   37 sec   (4068 perm/sec)   p_kst 4.170000e-01   p_cons 1.119333e-02   p_joint 1.119333e-02

Outputting figure to mutsig2_images.part000000000084/IKZF4.2_1790_150000_0.417_0.011193_0.011193.png
                gene_name: IKZF4
               theta_stop: 0.095 
                    nperm: 150000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.011 
      ci_cons_bounds_left: 0.011 
     ci_cons_bounds_right: 0.012 
                  p_joint: 0.011 
     ci_joint_bounds_left: 0.011 
    ci_joint_bounds_right: 0.012 

Current progress: 60 percent done.
IKZF5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.880121e-02	ci left: 8.052171e-01	ci right 8.206001e-01	k: 8130	n:10000
Cons ci ratio: 2.371229e-02	ci left: 7.233032e-01	ci right 7.407614e-01	k: 7321	n:10000
KS ci ratio: 3.864157e-02	ci left: 4.972503e-01	ci right 5.169456e-01	k: 5071	n:10000
IKZF5   10000 perm   2 sec   (6136 perm/sec)   p_kst 5.071000e-01   p_cons 7.321000e-01   p_joint 8.130000e-01

Outputting figure to mutsig2_images.part000000000084/IKZF5.2_1272_10000_0.5071_0.7321_0.813.png
                gene_name: IKZF5
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 62 percent done.
IL10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.497436e-02	ci left: 8.660086e-01	ci right 8.791735e-01	k: 8727	n:10000
KS ci ratio: 3.398767e-02	ci left: 5.610295e-01	ci right 5.805293e-01	k: 5708	n:10000
IL10   10000 perm   1 sec   (7070 perm/sec)   p_kst 5.708000e-01   p_cons 8.727000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000084/IL10.2_557_10000_0.5708_0.8727_1.png
                gene_name: IL10
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
IL10RA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.558138e-02	ci left: 8.567172e-01	ci right 8.702703e-01	k: 8636	n:10000
KS ci ratio: 2.153911e-02	ci left: 7.597007e-01	ci right 7.763429e-01	k: 7681	n:10000
IL10RA   10000 perm   2 sec   (6175 perm/sec)   p_kst 7.681000e-01   p_cons 8.636000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000084/IL10RA.2_1765_10000_0.7681_0.8636_1.png
                gene_name: IL10RA
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
IL13RA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.148904e-02	ci left: 1.479580e-01	ci right 1.622435e-01	k: 1550	n:10000
Cons ci ratio: 2.830261e-02	ci left: 6.479030e-01	ci right 6.666053e-01	k: 6573	n:10000
KS ci ratio: 1.824960e-01	ci left: 4.006355e-02	ci right 4.820470e-02	k: 440	n:10000
IL13RA1   10000 perm   2 sec   (6523 perm/sec)   p_kst 4.400000e-02   p_cons 6.573000e-01   p_joint 1.550000e-01

Joint ci ratio: 6.175015e-02	ci left: 1.624965e-01	ci right 1.729003e-01	k: 3353	n:20000
Cons ci ratio: 1.995162e-02	ci left: 6.520811e-01	ci right 6.652727e-01	k: 13174	n:20000
KS ci ratio: 1.247431e-01	ci left: 4.410792e-02	ci right 5.002466e-02	k: 940	n:20000
IL13RA1   20000 perm   3 sec   (5773 perm/sec)   p_kst 4.700000e-02   p_cons 6.587000e-01   p_joint 1.676500e-01

Joint ci ratio: 4.823421e-02	ci left: 1.760633e-01	ci right 1.847987e-01	k: 5412	n:30000
Cons ci ratio: 1.627978e-02	ci left: 6.536039e-01	ci right 6.643653e-01	k: 19770	n:30000
KS ci ratio: 1.010111e-01	ci left: 4.538053e-02	ci right 5.024085e-02	k: 1433	n:30000
IL13RA1   30000 perm   6 sec   (5285 perm/sec)   p_kst 4.776667e-02   p_cons 6.590000e-01   p_joint 1.804000e-01

Joint ci ratio: 4.371518e-02	ci left: 1.637036e-01	ci right 1.710448e-01	k: 6694	n:40000
Cons ci ratio: 1.476832e-02	ci left: 6.331176e-01	ci right 6.425624e-01	k: 25514	n:40000
KS ci ratio: 8.918167e-02	ci left: 4.401654e-02	ci right 4.814968e-02	k: 1842	n:40000
IL13RA1   40000 perm   8 sec   (5046 perm/sec)   p_kst 4.605000e-02   p_cons 6.378500e-01   p_joint 1.673500e-01

Outputting figure to mutsig2_images.part000000000084/IL13RA1.2_1328_40000_0.04605_0.63785_0.16735.png
                gene_name: IL13RA1
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.046 
        ci_ks_bounds_left: 0.044 
       ci_ks_bounds_right: 0.048 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 70 percent done.
IL17RE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.891855e-02	ci left: 8.032880e-01	ci right 8.187304e-01	k: 8111	n:10000
Cons ci ratio: 1.554170e-02	ci left: 8.573295e-01	ci right 8.708576e-01	k: 8642	n:10000
KS ci ratio: 2.170830e-02	ci left: 7.568669e-01	ci right 7.735784e-01	k: 7653	n:10000
IL17RE   10000 perm   2 sec   (5818 perm/sec)   p_kst 7.653000e-01   p_cons 8.642000e-01   p_joint 8.111000e-01

Outputting figure to mutsig2_images.part000000000084/IL17RE.2_2068_10000_0.7653_0.8642_0.8111.png
                gene_name: IL17RE
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 72 percent done.
IL18R1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.295548e-02	ci left: 4.445057e-01	ci right 4.641209e-01	k: 4543	n:10000
KS ci ratio: 9.979928e-03	ci left: 9.343371e-01	ci right 9.438051e-01	k: 9392	n:10000
IL18R1   10000 perm   2 sec   (6210 perm/sec)   p_kst 9.392000e-01   p_cons 4.543000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000084/IL18R1.2_1666_10000_0.9392_0.4543_1.png
                gene_name: IL18R1
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
IL1F5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.532304e-01	ci left: 2.043278e-02	ci right 2.644926e-02	k: 233	n:10000
Cons ci ratio: 5.520517e-02	ci left: 3.258476e-01	ci right 3.444485e-01	k: 3351	n:10000
KS ci ratio: 4.258860e-01	ci left: 6.616170e-03	ci right 1.027885e-02	k: 83	n:10000
IL1F5   10000 perm   1 sec   (6880 perm/sec)   p_kst 8.300000e-03   p_cons 3.351000e-01   p_joint 2.330000e-02

Joint ci ratio: 1.923153e-01	ci left: 1.839051e-02	ci right 2.235066e-02	k: 406	n:20000
Cons ci ratio: 3.867957e-02	ci left: 3.326871e-01	ci right 3.458596e-01	k: 6785	n:20000
KS ci ratio: 2.933313e-01	ci left: 7.552441e-03	ci right 1.019332e-02	k: 176	n:20000
IL1F5   20000 perm   3 sec   (6043 perm/sec)   p_kst 8.800000e-03   p_cons 3.392500e-01   p_joint 2.030000e-02

Joint ci ratio: 1.238102e-01	ci left: 3.032813e-02	ci right 3.436310e-02	k: 969	n:30000
Cons ci ratio: 3.153014e-02	ci left: 3.346386e-01	ci right 3.453924e-01	k: 10200	n:30000
KS ci ratio: 2.366011e-01	ci left: 7.993789e-03	ci right 1.016955e-02	k: 271	n:30000
IL1F5   30000 perm   5 sec   (5719 perm/sec)   p_kst 9.033333e-03   p_cons 3.400000e-01   p_joint 3.230000e-02

Joint ci ratio: 7.806378e-02	ci left: 5.698044e-02	ci right 6.163379e-02	k: 2371	n:40000
Cons ci ratio: 2.727753e-02	ci left: 3.358304e-01	ci right 3.451428e-01	k: 13619	n:40000
KS ci ratio: 2.022928e-01	ci left: 8.358856e-03	ci right 1.026340e-02	k: 371	n:40000
IL1F5   40000 perm   7 sec   (5507 perm/sec)   p_kst 9.275000e-03   p_cons 3.404750e-01   p_joint 5.927500e-02

Joint ci ratio: 6.896125e-02	ci left: 5.860292e-02	ci right 6.280826e-02	k: 3034	n:50000
Cons ci ratio: 2.439451e-02	ci left: 3.363856e-01	ci right 3.447129e-01	k: 17027	n:50000
KS ci ratio: 1.751363e-01	ci left: 9.050745e-03	ci right 1.080686e-02	k: 495	n:50000
IL1F5   50000 perm   9 sec   (5339 perm/sec)   p_kst 9.900000e-03   p_cons 3.405400e-01   p_joint 6.068000e-02

Joint ci ratio: 1.068658e-01	ci left: 2.075999e-02	ci right 2.311990e-02	k: 1315	n:60000
Cons ci ratio: 2.222169e-02	ci left: 3.377050e-01	ci right 3.453104e-01	k: 20490	n:60000
KS ci ratio: 1.590960e-01	ci left: 9.219296e-03	ci right 1.082863e-02	k: 600	n:60000
IL1F5   60000 perm   12 sec   (5121 perm/sec)   p_kst 1.000000e-02   p_cons 3.415000e-01   p_joint 2.191667e-02

Joint ci ratio: 1.132466e-01	ci left: 1.587473e-02	ci right 1.779419e-02	k: 1177	n:70000
Cons ci ratio: 2.059759e-02	ci left: 3.374593e-01	ci right 3.444967e-01	k: 23868	n:70000
KS ci ratio: 1.448282e-01	ci left: 9.606582e-03	ci right 1.112013e-02	k: 724	n:70000
IL1F5   70000 perm   14 sec   (5017 perm/sec)   p_kst 1.034286e-02   p_cons 3.409714e-01   p_joint 1.681429e-02

Joint ci ratio: 1.058640e-01	ci left: 1.595724e-02	ci right 1.775305e-02	k: 1347	n:80000
Cons ci ratio: 2.047916e-02	ci left: 3.108966e-01	ci right 3.173419e-01	k: 25129	n:80000
KS ci ratio: 1.361881e-01	ci left: 9.551521e-03	ci right 1.095934e-02	k: 819	n:80000
IL1F5   80000 perm   16 sec   (4916 perm/sec)   p_kst 1.023750e-02   p_cons 3.141125e-01   p_joint 1.683750e-02

Joint ci ratio: 1.003324e-01	ci left: 1.584034e-02	ci right 1.752435e-02	k: 1500	n:90000
Cons ci ratio: 1.927178e-02	ci left: 3.118881e-01	ci right 3.179683e-01	k: 28343	n:90000
KS ci ratio: 1.276674e-01	ci left: 9.704435e-03	ci right 1.103852e-02	k: 932	n:90000
IL1F5   90000 perm   19 sec   (4807 perm/sec)   p_kst 1.035556e-02   p_cons 3.149222e-01   p_joint 1.666667e-02

Joint ci ratio: 9.514830e-02	ci left: 1.589527e-02	ci right 1.749294e-02	k: 1668	n:100000
Cons ci ratio: 1.830458e-02	ci left: 3.115328e-01	ci right 3.172979e-01	k: 31441	n:100000
KS ci ratio: 1.206854e-01	ci left: 9.809560e-03	ci right 1.107908e-02	k: 1043	n:100000
IL1F5   100000 perm   21 sec   (4714 perm/sec)   p_kst 1.043000e-02   p_cons 3.144100e-01   p_joint 1.668000e-02

Joint ci ratio: 7.814574e-02	ci left: 2.148898e-02	ci right 2.324541e-02	k: 2459	n:110000
Cons ci ratio: 1.745391e-02	ci left: 3.116386e-01	ci right 3.171348e-01	k: 34582	n:110000
KS ci ratio: 1.149882e-01	ci left: 9.853036e-03	ci right 1.106389e-02	k: 1149	n:110000
IL1F5   110000 perm   24 sec   (4617 perm/sec)   p_kst 1.044545e-02   p_cons 3.143818e-01   p_joint 2.235455e-02

Joint ci ratio: 7.474251e-02	ci left: 2.157013e-02	ci right 2.325306e-02	k: 2688	n:120000
Cons ci ratio: 1.672925e-02	ci left: 3.112830e-01	ci right 3.165427e-01	k: 37669	n:120000
KS ci ratio: 1.103842e-01	ci left: 9.825594e-03	ci right 1.098158e-02	k: 1247	n:120000
IL1F5   120000 perm   27 sec   (4505 perm/sec)   p_kst 1.039167e-02   p_cons 3.139083e-01   p_joint 2.240000e-02

Joint ci ratio: 7.181135e-02	ci left: 2.160240e-02	ci right 2.321900e-02	k: 2912	n:130000
Cons ci ratio: 1.606840e-02	ci left: 3.115081e-01	ci right 3.165617e-01	k: 40824	n:130000
KS ci ratio: 1.060141e-01	ci left: 9.855624e-03	ci right 1.096638e-02	k: 1352	n:130000
IL1F5   130000 perm   29 sec   (4430 perm/sec)   p_kst 1.040000e-02   p_cons 3.140308e-01   p_joint 2.240000e-02

Joint ci ratio: 6.923391e-02	ci left: 2.161011e-02	ci right 2.316690e-02	k: 3133	n:140000
Cons ci ratio: 1.551022e-02	ci left: 3.108706e-01	ci right 3.157371e-01	k: 43862	n:140000
KS ci ratio: 1.021251e-01	ci left: 9.882139e-03	ci right 1.095257e-02	k: 1457	n:140000
IL1F5   140000 perm   32 sec   (4353 perm/sec)   p_kst 1.040714e-02   p_cons 3.133000e-01   p_joint 2.237857e-02

Joint ci ratio: 6.683399e-02	ci left: 2.167015e-02	ci right 2.317505e-02	k: 3362	n:150000
Cons ci ratio: 1.498478e-02	ci left: 3.109397e-01	ci right 3.156409e-01	k: 46993	n:150000
KS ci ratio: 9.838079e-02	ci left: 9.957795e-03	ci right 1.099459e-02	k: 1570	n:150000
IL1F5   150000 perm   35 sec   (4284 perm/sec)   p_kst 1.046667e-02   p_cons 3.132867e-01   p_joint 2.241333e-02

Outputting figure to mutsig2_images.part000000000084/IL1F5.2_484_150000_0.010467_0.31329_0.022413.png
                gene_name: IL1F5
               theta_stop: 0.098 
                    nperm: 150000 
                     p_ks: 0.010 
        ci_ks_bounds_left: 0.0100 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.022 
     ci_joint_bounds_left: 0.022 
    ci_joint_bounds_right: 0.023 

Current progress: 78 percent done.
IL1F7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.138447e-02	ci left: 1.482523e-01	ci right 1.625490e-01	k: 1553	n:10000
Cons ci ratio: 1.207044e-01	ci left: 8.961344e-02	ci right 1.012235e-01	k: 953	n:10000
KS ci ratio: 1.763529e-02	ci left: 8.242208e-01	ci right 8.389855e-01	k: 8317	n:10000
IL1F7   10000 perm   1 sec   (6675 perm/sec)   p_kst 8.317000e-01   p_cons 9.530000e-02   p_joint 1.553000e-01

Joint ci ratio: 6.675645e-02	ci left: 1.421190e-01	ci right 1.519839e-01	k: 2940	n:20000
Cons ci ratio: 8.617888e-02	ci left: 8.969559e-02	ci right 9.782296e-02	k: 1874	n:20000
KS ci ratio: 1.254289e-02	ci left: 8.247718e-01	ci right 8.352320e-01	k: 16601	n:20000
IL1F7   20000 perm   3 sec   (5902 perm/sec)   p_kst 8.300500e-01   p_cons 9.370000e-02   p_joint 1.470000e-01

Outputting figure to mutsig2_images.part000000000084/IL1F7.2_748_20000_0.83005_0.0937_0.147.png
                gene_name: IL1F7
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.094 
      ci_cons_bounds_left: 0.090 
     ci_cons_bounds_right: 0.098 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 80 percent done.
IL1RAP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.016222e-02	ci left: 4.779579e-01	ci right 4.976493e-01	k: 4878	n:10000
Cons ci ratio: 1.889386e-02	ci left: 8.036941e-01	ci right 8.191241e-01	k: 8115	n:10000
KS ci ratio: 7.834908e-02	ci left: 1.922969e-01	ci right 2.080782e-01	k: 2001	n:10000
IL1RAP   10000 perm   2 sec   (5793 perm/sec)   p_kst 2.001000e-01   p_cons 8.115000e-01   p_joint 4.878000e-01

Outputting figure to mutsig2_images.part000000000084/IL1RAP.2_2496_10000_0.2001_0.8115_0.4878.png
                gene_name: IL1RAP
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 82 percent done.
IL20RB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.860600e-02	ci left: 3.844050e-01	ci right 4.036568e-01	k: 3940	n:10000
Cons ci ratio: 4.969165e-02	ci left: 3.739550e-01	ci right 3.931129e-01	k: 3835	n:10000
KS ci ratio: 1.438733e-01	ci left: 6.410846e-02	ci right 7.414431e-02	k: 690	n:10000
IL20RB   10000 perm   2 sec   (6641 perm/sec)   p_kst 6.900000e-02   p_cons 3.835000e-01   p_joint 3.940000e-01

Joint ci ratio: 7.352442e-03	ci left: 9.307777e-01	ci right 9.376954e-01	k: 18686	n:20000
Cons ci ratio: 3.519287e-02	ci left: 3.760560e-01	ci right 3.895781e-01	k: 7656	n:20000
KS ci ratio: 1.016569e-01	ci left: 6.567166e-02	ci right 7.275421e-02	k: 1383	n:20000
IL20RB   20000 perm   3 sec   (5842 perm/sec)   p_kst 6.915000e-02   p_cons 3.828000e-01   p_joint 9.343000e-01

Joint ci ratio: 2.030166e-02	ci left: 5.484536e-01	ci right 5.597359e-01	k: 16623	n:30000
Cons ci ratio: 2.874190e-02	ci left: 3.771949e-01	ci right 3.882278e-01	k: 11481	n:30000
KS ci ratio: 8.302460e-02	ci left: 6.628788e-02	ci right 7.206256e-02	k: 2074	n:30000
IL20RB   30000 perm   5 sec   (5533 perm/sec)   p_kst 6.913333e-02   p_cons 3.827000e-01   p_joint 5.541000e-01

Outputting figure to mutsig2_images.part000000000084/IL20RB.2_964_30000_0.069133_0.3827_0.5541.png
                gene_name: IL20RB
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.069 
        ci_ks_bounds_left: 0.066 
       ci_ks_bounds_right: 0.072 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.56 

Current progress: 85 percent done.
IL22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.379167e-02	ci left: 8.836011e-01	ci right 8.959708e-01	k: 8899	n:10000
Cons ci ratio: 6.171684e-03	ci left: 9.727020e-01	ci right 9.788166e-01	k: 9759	n:10000
KS ci ratio: 5.581766e-02	ci left: 3.209831e-01	ci right 3.395159e-01	k: 3302	n:10000
IL22   10000 perm   1 sec   (6779 perm/sec)   p_kst 3.302000e-01   p_cons 9.759000e-01   p_joint 8.899000e-01

Outputting figure to mutsig2_images.part000000000084/IL22.2_560_10000_0.3302_0.9759_0.8899.png
                gene_name: IL22
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.90 

Current progress: 88 percent done.
IL23R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.873938e-02	ci left: 8.062326e-01	ci right 8.215841e-01	k: 8140	n:10000
Cons ci ratio: 4.981796e-02	ci left: 3.727610e-01	ci right 3.919076e-01	k: 3823	n:10000
KS ci ratio: 8.627786e-02	ci left: 1.636672e-01	ci right 1.785250e-01	k: 1710	n:10000
IL23R   10000 perm   2 sec   (6092 perm/sec)   p_kst 1.710000e-01   p_cons 3.823000e-01   p_joint 8.140000e-01

Outputting figure to mutsig2_images.part000000000084/IL23R.2_1930_10000_0.171_0.3823_0.814.png
                gene_name: IL23R
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 90 percent done.
IL27RA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.440648e-02	ci left: 2.615144e-01	ci right 2.790196e-01	k: 2702	n:10000
KS ci ratio: 2.042418e-02	ci left: 7.783356e-01	ci right 7.944972e-01	k: 7865	n:10000
IL27RA   10000 perm   2 sec   (6281 perm/sec)   p_kst 7.865000e-01   p_cons 2.702000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000084/IL27RA.2_1967_10000_0.7865_0.2702_1.png
                gene_name: IL27RA
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
IL28B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.698263e-02	ci left: 8.347018e-01	ci right 8.490984e-01	k: 8420	n:10000
Cons ci ratio: 9.962467e-03	ci left: 9.345442e-01	ci right 9.439979e-01	k: 9394	n:10000
KS ci ratio: 4.103189e-02	ci left: 4.672683e-01	ci right 4.869450e-01	k: 4771	n:10000
IL28B   10000 perm   1 sec   (6792 perm/sec)   p_kst 4.771000e-01   p_cons 9.394000e-01   p_joint 8.420000e-01

Outputting figure to mutsig2_images.part000000000084/IL28B.2_610_10000_0.4771_0.9394_0.842.png
                gene_name: IL28B
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 95 percent done.
IL2RB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.383106e-02	ci left: 2.117161e-01	ci right 2.280474e-01	k: 2198	n:10000
Cons ci ratio: 9.549380e-02	ci left: 1.372712e-01	ci right 1.511368e-01	k: 1441	n:10000
KS ci ratio: 6.468518e-02	ci left: 2.598323e-01	ci right 2.773027e-01	k: 2685	n:10000
IL2RB   10000 perm   2 sec   (6194 perm/sec)   p_kst 2.685000e-01   p_cons 1.441000e-01   p_joint 2.198000e-01

Outputting figure to mutsig2_images.part000000000084/IL2RB.2_1692_10000_0.2685_0.1441_0.2198.png
                gene_name: IL2RB
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 98 percent done.
IL31RA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.424714e-03	ci left: 9.784504e-01	ci right 9.838641e-01	k: 9813	n:10000
Cons ci ratio: 1.990030e-02	ci left: 7.870536e-01	ci right 8.029742e-01	k: 7951	n:10000
KS ci ratio: 9.880038e-02	ci left: 1.292403e-01	ci right 1.427725e-01	k: 1359	n:10000
IL31RA   10000 perm   2 sec   (5868 perm/sec)   p_kst 1.359000e-01   p_cons 7.951000e-01   p_joint 9.813000e-01

Outputting figure to mutsig2_images.part000000000084/IL31RA.2_2355_10000_0.1359_0.7951_0.9813.png
                gene_name: IL31RA
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000084
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 84 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1430>
Subject: Job 8004180: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1430>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000085> was used as the working directory.
Started at Sun Nov 11 15:06:54 2012
Results reported at Sun Nov 11 15:50:07 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000085.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000085.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 85  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000085.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   2875.24 sec.
    Max Memory :      4802 MB
    Max Swap   :      7132 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
85
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 85
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 85: processing genes 7600 - 7690
Calculating significance of each gene.
Using projection method.
7600	IL4	1.729594e-01
7601	IL4I1	1
7602	IL4R	9.207216e-01
7603	IL5	1
7604	IL5RA	2.502717e-01
7605	IL6	6.087137e-01
7606	IL6R	8.275980e-01
7607	IL6ST	9.599281e-01
7608	IL7	3.104669e-01
7609	IL7R	5.473180e-02
7610	IL8	1
7611	IL9	1
7612	IL9R	5.811359e-03
7613	ILDR1	1
7614	ILDR2	7.905859e-01
7615	ILF2	5.741123e-01
7616	ILF3	1
7617	ILK	7.976947e-01
7618	ILKAP	6.963296e-01
7619	ILVBL	6.436706e-01
7620	IMMP1L	1
7621	IMMP2L	3.899279e-01
7622	IMMT	3.039311e-01
7623	IMP3	1
7624	IMP4	4.917829e-02
7625	IMP5	9.051474e-01
7626	IMPA1	3.389892e-01
7627	IMPA2	1
7628	IMPACT	1.162476e-01
7629	IMPAD1	1
7630	IMPDH1	6.580654e-01
7631	IMPDH2	8.026534e-01
7632	IMPG1	1
7633	IMPG2	3.493147e-01
7634	INA	1
7635	INADL	9.932900e-02
7636	INCA1	1
7637	INCENP	9.107917e-01
7638	INF2	7.875280e-01
7639	ING1	1
7640	ING2	5.930030e-01
7641	ING3	1.832259e-01
7642	ING4	3.148495e-01
7643	ING5	3.772794e-01
7644	INHA	1.234681e-01
7645	INHBA	2.661853e-02
7646	INHBB	4.563258e-01
7647	INHBC	5.849205e-01
7648	INHBE	1
7649	INMT	5.457235e-01
7650	INO80	7.469240e-01
7651	INO80B	2.598296e-01
7652	INO80C	1
7653	INO80D	1
7654	INO80E	2.311712e-01
7655	INPP1	8.336386e-01
7656	INPP4A	6.209069e-01
7657	INPP4B	4.159479e-01
7658	INPP5A	8.411876e-02
7659	INPP5B	1.055006e-01
7660	INPP5D	3.830453e-02
7661	INPP5E	4.325328e-01
7662	INPP5F	9.628580e-01
7663	INPP5J	3.940086e-01
7664	INPP5K	1
7665	INPPL1	6.987759e-01
7666	INS	1
7667	INS-IGF2	1
7668	INSC	8.036284e-01
7669	INSIG1	2.162448e-01
7670	INSIG2	5.220728e-01
7671	INSL3	6.318191e-02
7672	INSL4	3.234933e-01
7673	INSL5	3.897987e-01
7674	INSL6	1
7675	INSM1	1
7676	INSM2	1
7677	INSR	7.847944e-01
7678	INSRR	5.207627e-01
7679	INTS1	8.825028e-01
7680	INTS10	1
7681	INTS12	1
7682	INTS2	9.595470e-01
7683	INTS3	8.577882e-01
7684	INTS4	9.593242e-01
7685	INTS5	7.045171e-01
7686	INTS6	3.181613e-01
7687	INTS7	1
7688	INTS8	1
7689	INTS9	9.327879e-01
7690	INTU	9.317324e-01
Done

Running MutSig 2:
Scatter job 85: processing genes 7600 - 7690
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
INADL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.025127e-02	ci left: 6.171342e-01	ci right 6.361919e-01	k: 6267	n:10000
Cons ci ratio: 2.161767e-02	ci left: 7.583849e-01	ci right 7.750594e-01	k: 7668	n:10000
KS ci ratio: 4.401905e-02	ci left: 4.324339e-01	ci right 4.519998e-01	k: 4422	n:10000
INADL   10000 perm   3 sec   (3277 perm/sec)   p_kst 4.422000e-01   p_cons 7.668000e-01   p_joint 6.267000e-01

Outputting figure to mutsig2_images.part000000000085/INADL.13_5574_10000_0.4422_0.7668_0.6267.png
                gene_name: INADL
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 2 percent done.
IMPG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.158221e-02	ci left: 3.565488e-01	ci right 3.755293e-01	k: 3660	n:10000
Cons ci ratio: 2.354312e-02	ci left: 7.261314e-01	ci right 7.435316e-01	k: 7349	n:10000
KS ci ratio: 7.336085e-02	ci left: 2.138864e-01	ci right 2.302758e-01	k: 2220	n:10000
IMPG1   10000 perm   2 sec   (4973 perm/sec)   p_kst 2.220000e-01   p_cons 7.349000e-01   p_joint 3.660000e-01

Outputting figure to mutsig2_images.part000000000085/IMPG1.10_2462_10000_0.222_0.7349_0.366.png
                gene_name: IMPG1
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 4 percent done.
IMPG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.378697e-02	ci left: 5.639369e-01	ci right 5.834201e-01	k: 5737	n:10000
Cons ci ratio: 1.702727e-02	ci left: 8.339892e-01	ci right 8.484115e-01	k: 8413	n:10000
KS ci ratio: 5.182757e-02	ci left: 3.543616e-01	ci right 3.733178e-01	k: 3638	n:10000
IMPG2   10000 perm   2 sec   (4065 perm/sec)   p_kst 3.638000e-01   p_cons 8.413000e-01   p_joint 5.737000e-01

Outputting figure to mutsig2_images.part000000000085/IMPG2.10_3802_10000_0.3638_0.8413_0.5737.png
                gene_name: IMPG2
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 7 percent done.
INSR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.254871e-02	ci left: 1.763499e-01	ci right 1.916346e-01	k: 1839	n:10000
Cons ci ratio: 2.166412e-01	ci left: 2.825837e-02	ci right 3.521793e-02	k: 316	n:10000
KS ci ratio: 4.599094e-02	ci left: 4.109985e-01	ci right 4.304477e-01	k: 4207	n:10000
INSR   10000 perm   3 sec   (3982 perm/sec)   p_kst 4.207000e-01   p_cons 3.160000e-02   p_joint 1.839000e-01

Joint ci ratio: 7.796938e-02	ci left: 1.078084e-01	ci right 1.166047e-01	k: 2243	n:20000
Cons ci ratio: 1.459755e-01	ci left: 3.225460e-02	ci right 3.738180e-02	k: 695	n:20000
KS ci ratio: 3.234730e-02	ci left: 4.164889e-01	ci right 4.302333e-01	k: 8467	n:20000
INSR   20000 perm   6 sec   (3569 perm/sec)   p_kst 4.233500e-01   p_cons 3.475000e-02   p_joint 1.121500e-01

Joint ci ratio: 6.619239e-02	ci left: 1.011915e-01	ci right 1.081519e-01	k: 3139	n:30000
Cons ci ratio: 1.200257e-01	ci left: 3.226906e-02	ci right 3.642175e-02	k: 1029	n:30000
KS ci ratio: 2.648723e-02	ci left: 4.163692e-01	ci right 4.275793e-01	k: 12659	n:30000
INSR   30000 perm   9 sec   (3422 perm/sec)   p_kst 4.219667e-01   p_cons 3.430000e-02   p_joint 1.046333e-01

Joint ci ratio: 6.505132e-02	ci left: 8.051127e-02	ci right 8.594942e-02	k: 3328	n:40000
Cons ci ratio: 1.047915e-01	ci left: 3.202608e-02	ci right 3.559202e-02	k: 1351	n:40000
KS ci ratio: 2.293151e-02	ci left: 4.172782e-01	ci right 4.269831e-01	k: 16885	n:40000
INSR   40000 perm   12 sec   (3332 perm/sec)   p_kst 4.221250e-01   p_cons 3.377500e-02   p_joint 8.320000e-02

Joint ci ratio: 5.710710e-02	ci left: 8.365533e-02	ci right 8.859284e-02	k: 4305	n:50000
Cons ci ratio: 9.310323e-02	ci left: 3.264362e-02	ci right 3.585075e-02	k: 1711	n:50000
KS ci ratio: 2.047569e-02	ci left: 4.186243e-01	ci right 4.273046e-01	k: 21148	n:50000
INSR   50000 perm   15 sec   (3263 perm/sec)   p_kst 4.229600e-01   p_cons 3.422000e-02   p_joint 8.610000e-02

Outputting figure to mutsig2_images.part000000000085/INSR.9_4237_50000_0.42296_0.03422_0.0861.png
                gene_name: INSR
               theta_stop: 0.093 
                    nperm: 50000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.034 
      ci_cons_bounds_left: 0.033 
     ci_cons_bounds_right: 0.036 
                  p_joint: 0.086 
     ci_joint_bounds_left: 0.084 
    ci_joint_bounds_right: 0.089 

Current progress: 9 percent done.
INTS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.698263e-02	ci left: 8.347018e-01	ci right 8.490984e-01	k: 8420	n:10000
Cons ci ratio: 4.769225e-02	ci left: 3.934654e-01	ci right 4.127911e-01	k: 4031	n:10000
KS ci ratio: 1.723711e-02	ci left: 8.306303e-01	ci right 8.451723e-01	k: 8380	n:10000
INTS1   10000 perm   3 sec   (3336 perm/sec)   p_kst 8.380000e-01   p_cons 4.031000e-01   p_joint 8.420000e-01

Outputting figure to mutsig2_images.part000000000085/INTS1.9_6761_10000_0.838_0.4031_0.842.png
                gene_name: INTS1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 11 percent done.
IL7R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.426074e-02	ci left: 4.297410e-01	ci right 4.492943e-01	k: 4395	n:10000
Cons ci ratio: 3.213000e-02	ci left: 5.884132e-01	ci right 6.077296e-01	k: 5981	n:10000
KS ci ratio: 6.800406e-02	ci left: 2.408450e-01	ci right 2.579012e-01	k: 2493	n:10000
IL7R   10000 perm   2 sec   (5470 perm/sec)   p_kst 2.493000e-01   p_cons 5.981000e-01   p_joint 4.395000e-01

Outputting figure to mutsig2_images.part000000000085/IL7R.8_1412_10000_0.2493_0.5981_0.4395.png
                gene_name: IL7R
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 13 percent done.
INPP5D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.600744e-02	ci left: 3.194942e-01	ci right 3.380056e-01	k: 3287	n:10000
Cons ci ratio: 8.738921e-02	ci left: 1.601305e-01	ci right 1.748638e-01	k: 1674	n:10000
KS ci ratio: 4.270515e-02	ci left: 4.473998e-01	ci right 4.670251e-01	k: 4572	n:10000
INPP5D   10000 perm   2 sec   (4433 perm/sec)   p_kst 4.572000e-01   p_cons 1.674000e-01   p_joint 3.287000e-01

Outputting figure to mutsig2_images.part000000000085/INPP5D.8_3186_10000_0.4572_0.1674_0.3287.png
                gene_name: INPP5D
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 16 percent done.
INPP5B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.829190e-02	ci left: 3.022309e-01	ci right 3.204791e-01	k: 3113	n:10000
Cons ci ratio: 3.595726e-02	ci left: 5.331752e-01	ci right 5.527998e-01	k: 5430	n:10000
KS ci ratio: 9.647308e-02	ci left: 1.348219e-01	ci right 1.485876e-01	k: 1416	n:10000
INPP5B   10000 perm   2 sec   (4563 perm/sec)   p_kst 1.416000e-01   p_cons 5.430000e-01   p_joint 3.113000e-01

Outputting figure to mutsig2_images.part000000000085/INPP5B.7_2834_10000_0.1416_0.543_0.3113.png
                gene_name: INPP5B
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 18 percent done.
IL9R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.962823e-03	ci left: 9.659399e-01	ci right 9.727830e-01	k: 9695	n:10000
KS ci ratio: 1.301967e-02	ci left: 8.946712e-01	ci right 9.064942e-01	k: 9007	n:10000
IL9R   10000 perm   2 sec   (4980 perm/sec)   p_kst 9.007000e-01   p_cons 9.695000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000085/IL9R.6_1602_10000_0.9007_0.9695_1.png
                gene_name: IL9R
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 20 percent done.
INO80
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.600967e-02	ci left: 6.851647e-01	ci right 7.033220e-01	k: 6943	n:10000
Cons ci ratio: 9.780389e-02	ci left: 1.315900e-01	ci right 1.452214e-01	k: 1383	n:10000
KS ci ratio: 1.536921e-02	ci left: 8.599833e-01	ci right 8.734023e-01	k: 8668	n:10000
INO80   10000 perm   2 sec   (4330 perm/sec)   p_kst 8.668000e-01   p_cons 1.383000e-01   p_joint 6.943000e-01

Outputting figure to mutsig2_images.part000000000085/INO80.6_4811_10000_0.8668_0.1383_0.6943.png
                gene_name: INO80
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.70 

Current progress: 22 percent done.
INPP4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.004989e-02	ci left: 4.793568e-01	ci right 4.990495e-01	k: 4892	n:10000
Cons ci ratio: 1.851635e-02	ci left: 8.098890e-01	ci right 8.251256e-01	k: 8176	n:10000
KS ci ratio: 5.900626e-02	ci left: 2.970746e-01	ci right 3.152384e-01	k: 3061	n:10000
INPP4B   10000 perm   2 sec   (4618 perm/sec)   p_kst 3.061000e-01   p_cons 8.176000e-01   p_joint 4.892000e-01

Outputting figure to mutsig2_images.part000000000085/INPP4B.6_2867_10000_0.3061_0.8176_0.4892.png
                gene_name: INPP4B
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 24 percent done.
INSRR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.096618e-02	ci left: 4.680674e-01	ci right 4.877455e-01	k: 4779	n:10000
Cons ci ratio: 2.753382e-02	ci left: 6.602828e-01	ci right 6.788183e-01	k: 6696	n:10000
KS ci ratio: 5.651887e-02	ci left: 3.155244e-01	ci right 3.339778e-01	k: 3247	n:10000
INSRR   10000 perm   2 sec   (4652 perm/sec)   p_kst 3.247000e-01   p_cons 6.696000e-01   p_joint 4.779000e-01

Outputting figure to mutsig2_images.part000000000085/INSRR.6_3981_10000_0.3247_0.6696_0.4779.png
                gene_name: INSRR
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 27 percent done.
IMMT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.607094e-02	ci left: 3.189980e-01	ci right 3.375022e-01	k: 3282	n:10000
Cons ci ratio: 1.373534e-02	ci left: 8.844205e-01	ci right 8.967510e-01	k: 8907	n:10000
KS ci ratio: 7.600619e-02	ci left: 2.020522e-01	ci right 2.181170e-01	k: 2100	n:10000
IMMT   10000 perm   2 sec   (5096 perm/sec)   p_kst 2.100000e-01   p_cons 8.907000e-01   p_joint 3.282000e-01

Outputting figure to mutsig2_images.part000000000085/IMMT.5_2337_10000_0.21_0.8907_0.3282.png
                gene_name: IMMT
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 29 percent done.
INHBA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.603417e-02	ci left: 6.847616e-01	ci right 7.029254e-01	k: 6939	n:10000
KS ci ratio: 7.936930e-03	ci left: 9.567051e-01	ci right 9.644236e-01	k: 9607	n:10000
INHBA   10000 perm   2 sec   (5931 perm/sec)   p_kst 9.607000e-01   p_cons 6.939000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000085/INHBA.5_1289_10000_0.9607_0.6939_1.png
                gene_name: INHBA
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 31 percent done.
INPP4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.564886e-02	ci left: 1.368792e-01	ci right 1.507290e-01	k: 1437	n:10000
Cons ci ratio: 3.512569e-01	ci left: 1.014137e-02	ci right 1.454954e-02	k: 122	n:10000
KS ci ratio: 2.061858e-02	ci left: 7.750931e-01	ci right 7.913416e-01	k: 7833	n:10000
INPP4A   10000 perm   2 sec   (4760 perm/sec)   p_kst 7.833000e-01   p_cons 1.220000e-02   p_joint 1.437000e-01

Joint ci ratio: 8.816463e-02	ci left: 8.597060e-02	ci right 9.394908e-02	k: 1798	n:20000
Cons ci ratio: 2.488949e-01	ci left: 1.072482e-02	ci right 1.381940e-02	k: 244	n:20000
KS ci ratio: 1.506367e-02	ci left: 7.661212e-01	ci right 7.777996e-01	k: 15440	n:20000
INPP4A   20000 perm   5 sec   (4277 perm/sec)   p_kst 7.720000e-01   p_cons 1.220000e-02   p_joint 8.990000e-02

Joint ci ratio: 6.962333e-02	ci left: 9.222965e-02	ci right 9.891558e-02	k: 2866	n:30000
Cons ci ratio: 2.068140e-01	ci left: 1.060884e-02	ci right 1.308704e-02	k: 354	n:30000
KS ci ratio: 1.237859e-02	ci left: 7.649267e-01	ci right 7.744877e-01	k: 23092	n:30000
INPP4A   30000 perm   7 sec   (4080 perm/sec)   p_kst 7.697333e-01   p_cons 1.180000e-02   p_joint 9.553333e-02

Joint ci ratio: 5.876679e-02	ci left: 9.715068e-02	ci right 1.030575e-01	k: 4003	n:40000
Cons ci ratio: 1.780316e-01	ci left: 1.090819e-02	ci right 1.306353e-02	k: 478	n:40000
KS ci ratio: 1.070606e-02	ci left: 7.660451e-01	ci right 7.743156e-01	k: 30808	n:40000
INPP4A   40000 perm   10 sec   (3943 perm/sec)   p_kst 7.702000e-01   p_cons 1.195000e-02   p_joint 1.000750e-01

Joint ci ratio: 5.242895e-02	ci left: 9.791738e-02	ci right 1.032091e-01	k: 5027	n:50000
Cons ci ratio: 1.706741e-01	ci left: 9.548446e-03	ci right 1.134907e-02	k: 521	n:50000
KS ci ratio: 9.586067e-03	ci left: 7.661047e-01	ci right 7.735040e-01	k: 38491	n:50000
INPP4A   50000 perm   13 sec   (3850 perm/sec)   p_kst 7.698200e-01   p_cons 1.042000e-02   p_joint 1.005400e-01

Joint ci ratio: 5.030061e-02	ci left: 8.959993e-02	ci right 9.423963e-02	k: 5514	n:60000
Cons ci ratio: 1.566142e-01	ci left: 9.523568e-03	ci right 1.115765e-02	k: 619	n:60000
KS ci ratio: 8.789599e-03	ci left: 7.648525e-01	ci right 7.716215e-01	k: 46095	n:60000
INPP4A   60000 perm   16 sec   (3771 perm/sec)   p_kst 7.682500e-01   p_cons 1.031667e-02   p_joint 9.190000e-02

Joint ci ratio: 5.112228e-02	ci left: 7.550140e-02	ci right 7.947657e-02	k: 5423	n:70000
Cons ci ratio: 1.447274e-01	ci left: 9.620355e-03	ci right 1.113493e-02	k: 725	n:70000
KS ci ratio: 8.402912e-03	ci left: 7.534319e-01	ci right 7.598039e-01	k: 52964	n:70000
INPP4A   70000 perm   19 sec   (3697 perm/sec)   p_kst 7.566286e-01   p_cons 1.035714e-02   p_joint 7.747143e-02

Joint ci ratio: 5.226359e-02	ci left: 6.398034e-02	ci right 6.742624e-02	k: 5255	n:80000
Cons ci ratio: 1.362721e-01	ci left: 9.539443e-03	ci right 1.094641e-02	k: 818	n:80000
KS ci ratio: 7.865084e-03	ci left: 7.534100e-01	ci right 7.593714e-01	k: 60512	n:80000
INPP4A   80000 perm   22 sec   (3629 perm/sec)   p_kst 7.564000e-01   p_cons 1.022500e-02   p_joint 6.568750e-02

Joint ci ratio: 4.863505e-02	ci left: 6.568256e-02	ci right 6.896762e-02	k: 6058	n:90000
Cons ci ratio: 1.290013e-01	ci left: 9.500038e-03	ci right 1.082071e-02	k: 913	n:90000
KS ci ratio: 7.417286e-03	ci left: 7.534814e-01	ci right 7.591021e-01	k: 68067	n:90000
INPP4A   90000 perm   25 sec   (3554 perm/sec)   p_kst 7.563000e-01   p_cons 1.014444e-02   p_joint 6.731111e-02

Joint ci ratio: 4.399829e-02	ci left: 7.191969e-02	ci right 7.516509e-02	k: 7353	n:100000
Cons ci ratio: 1.226597e-01	ci left: 9.489509e-03	ci right 1.073915e-02	k: 1010	n:100000
KS ci ratio: 7.032074e-03	ci left: 7.538676e-01	ci right 7.591975e-01	k: 75654	n:100000
INPP4A   100000 perm   29 sec   (3496 perm/sec)   p_kst 7.565400e-01   p_cons 1.010000e-02   p_joint 7.353000e-02

Joint ci ratio: 4.225142e-02	ci left: 7.103733e-02	ci right 7.411252e-02	k: 7982	n:110000
Cons ci ratio: 1.169037e-01	ci left: 9.526334e-03	ci right 1.071789e-02	k: 1112	n:110000
KS ci ratio: 6.715641e-03	ci left: 7.533959e-01	ci right 7.584815e-01	k: 83154	n:110000
INPP4A   110000 perm   32 sec   (3439 perm/sec)   p_kst 7.559455e-01   p_cons 1.010909e-02   p_joint 7.256364e-02

Joint ci ratio: 3.888533e-02	ci left: 7.655482e-02	ci right 7.959894e-02	k: 9368	n:120000
Cons ci ratio: 1.121689e-01	ci left: 9.509553e-03	ci right 1.064764e-02	k: 1208	n:120000
KS ci ratio: 6.479171e-03	ci left: 7.506584e-01	ci right 7.555461e-01	k: 90373	n:120000
INPP4A   120000 perm   35 sec   (3383 perm/sec)   p_kst 7.531083e-01   p_cons 1.006667e-02   p_joint 7.806667e-02

Joint ci ratio: 3.597960e-02	ci left: 8.216188e-02	ci right 8.517979e-02	k: 10876	n:130000
Cons ci ratio: 1.073038e-01	ci left: 9.615974e-03	ci right 1.071373e-02	k: 1320	n:130000
KS ci ratio: 6.226800e-03	ci left: 7.506462e-01	ci right 7.553425e-01	k: 97890	n:130000
INPP4A   130000 perm   39 sec   (3324 perm/sec)   p_kst 7.530000e-01   p_cons 1.015385e-02   p_joint 8.366154e-02

Joint ci ratio: 3.604288e-02	ci left: 7.650126e-02	ci right 7.931625e-02	k: 10906	n:140000
Cons ci ratio: 1.034967e-01	ci left: 9.617622e-03	ci right 1.067424e-02	k: 1419	n:140000
KS ci ratio: 6.004443e-03	ci left: 7.504742e-01	ci right 7.550010e-01	k: 105384	n:140000
INPP4A   140000 perm   43 sec   (3276 perm/sec)   p_kst 7.527429e-01   p_cons 1.013571e-02   p_joint 7.790000e-02

Joint ci ratio: 3.089671e-02	ci left: 9.541405e-02	ci right 9.841488e-02	k: 14536	n:150000
Cons ci ratio: 1.002349e-01	ci left: 9.587141e-03	ci right 1.060526e-02	k: 1513	n:150000
KS ci ratio: 5.805147e-03	ci left: 7.502744e-01	ci right 7.546492e-01	k: 112870	n:150000
INPP4A   150000 perm   47 sec   (3215 perm/sec)   p_kst 7.524667e-01   p_cons 1.008667e-02   p_joint 9.690667e-02

Joint ci ratio: 2.996500e-02	ci left: 9.517532e-02	ci right 9.807681e-02	k: 15459	n:160000
Cons ci ratio: 9.692881e-02	ci left: 9.628026e-03	ci right 1.061485e-02	k: 1618	n:160000
KS ci ratio: 5.627285e-03	ci left: 7.499139e-01	ci right 7.541520e-01	k: 120326	n:160000
INPP4A   160000 perm   51 sec   (3166 perm/sec)   p_kst 7.520375e-01   p_cons 1.011250e-02   p_joint 9.661875e-02

Outputting figure to mutsig2_images.part000000000085/INPP4A.5_3215_160000_0.75204_0.010112_0.096619.png
                gene_name: INPP4A
               theta_stop: 0.097 
                    nperm: 160000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.010 
      ci_cons_bounds_left: 0.0096 
     ci_cons_bounds_right: 0.011 
                  p_joint: 0.097 
     ci_joint_bounds_left: 0.095 
    ci_joint_bounds_right: 0.098 

Current progress: 33 percent done.
INTS5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.092200e-02	ci left: 3.625152e-01	ci right 3.815594e-01	k: 3720	n:10000
Cons ci ratio: 2.488745e-02	ci left: 7.037201e-01	ci right 7.215559e-01	k: 7127	n:10000
KS ci ratio: 7.939167e-02	ci left: 1.881605e-01	ci right 2.038170e-01	k: 1959	n:10000
INTS5   10000 perm   2 sec   (4774 perm/sec)   p_kst 1.959000e-01   p_cons 7.127000e-01   p_joint 3.720000e-01

Outputting figure to mutsig2_images.part000000000085/INTS5.5_3068_10000_0.1959_0.7127_0.372.png
                gene_name: INTS5
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 36 percent done.
INTS6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.893336e-02	ci left: 6.378433e-01	ci right 6.566709e-01	k: 6473	n:10000
KS ci ratio: 3.708756e-02	ci left: 5.177583e-01	ci right 5.374256e-01	k: 5276	n:10000
INTS6   10000 perm   2 sec   (5181 perm/sec)   p_kst 5.276000e-01   p_cons 6.473000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000085/INTS6.5_2745_10000_0.5276_0.6473_1.png
                gene_name: INTS6
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 38 percent done.
INPP5A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.527287e-01	ci left: 5.706232e-02	ci right 6.659491e-02	k: 617	n:10000
Cons ci ratio: 1.290300e-02	ci left: 8.963130e-01	ci right 9.080515e-01	k: 9023	n:10000
KS ci ratio: 3.363436e-01	ci left: 1.114735e-02	ci right 1.574255e-02	k: 133	n:10000
INPP5A   10000 perm   2 sec   (5915 perm/sec)   p_kst 1.330000e-02   p_cons 9.023000e-01   p_joint 6.170000e-02

Joint ci ratio: 1.109456e-01	ci left: 5.548160e-02	ci right 6.204742e-02	k: 1174	n:20000
Cons ci ratio: 9.143078e-03	ci left: 8.976940e-01	ci right 9.059887e-01	k: 18038	n:20000
KS ci ratio: 2.369421e-01	ci left: 1.189959e-02	ci right 1.514412e-02	k: 269	n:20000
INPP5A   20000 perm   4 sec   (5236 perm/sec)   p_kst 1.345000e-02   p_cons 9.019000e-01   p_joint 5.870000e-02

Joint ci ratio: 8.995198e-02	ci left: 5.684923e-02	ci right 6.223646e-02	k: 1785	n:30000
Cons ci ratio: 7.230694e-03	ci left: 9.040636e-01	ci right 9.106572e-01	k: 27222	n:30000
KS ci ratio: 1.934640e-01	ci left: 1.219299e-02	ci right 1.483580e-02	k: 404	n:30000
INPP5A   30000 perm   6 sec   (4977 perm/sec)   p_kst 1.346667e-02   p_cons 9.074000e-01   p_joint 5.950000e-02

Joint ci ratio: 7.173006e-02	ci left: 6.697753e-02	ci right 7.198519e-02	k: 2778	n:40000
Cons ci ratio: 6.245013e-03	ci left: 9.049733e-01	ci right 9.106673e-01	k: 36314	n:40000
KS ci ratio: 1.675454e-01	ci left: 1.236803e-02	ci right 1.465340e-02	k: 539	n:40000
INPP5A   40000 perm   8 sec   (4806 perm/sec)   p_kst 1.347500e-02   p_cons 9.078500e-01   p_joint 6.945000e-02

Joint ci ratio: 8.210577e-02	ci left: 4.180705e-02	ci right 4.540618e-02	k: 2179	n:50000
Cons ci ratio: 5.592621e-03	ci left: 9.050685e-01	ci right 9.101641e-01	k: 45382	n:50000
KS ci ratio: 1.477634e-01	ci left: 1.285356e-02	ci right 1.492345e-02	k: 693	n:50000
INPP5A   50000 perm   11 sec   (4642 perm/sec)   p_kst 1.386000e-02   p_cons 9.076400e-01   p_joint 4.358000e-02

Joint ci ratio: 8.890650e-02	ci left: 2.998632e-02	ci right 3.279258e-02	k: 1882	n:60000
Cons ci ratio: 5.089234e-03	ci left: 9.058278e-01	ci right 9.104660e-01	k: 54490	n:60000
KS ci ratio: 1.368865e-01	ci left: 1.255965e-02	ci right 1.442118e-02	k: 808	n:60000
INPP5A   60000 perm   13 sec   (4550 perm/sec)   p_kst 1.346667e-02   p_cons 9.081667e-01   p_joint 3.136667e-02

Joint ci ratio: 8.248287e-02	ci left: 2.996638e-02	ci right 3.255838e-02	k: 2187	n:70000
Cons ci ratio: 4.712753e-03	ci left: 9.059647e-01	ci right 9.102585e-01	k: 63569	n:70000
KS ci ratio: 1.275453e-01	ci left: 1.246445e-02	ci right 1.417625e-02	k: 931	n:70000
INPP5A   70000 perm   16 sec   (4459 perm/sec)   p_kst 1.330000e-02   p_cons 9.081286e-01   p_joint 3.124286e-02

Joint ci ratio: 6.742549e-02	ci left: 3.916902e-02	ci right 4.191442e-02	k: 3242	n:80000
Cons ci ratio: 4.416034e-03	ci left: 9.058120e-01	ci right 9.098333e-01	k: 72627	n:80000
KS ci ratio: 1.179210e-01	ci left: 1.282096e-02	ci right 1.443959e-02	k: 1089	n:80000
INPP5A   80000 perm   18 sec   (4362 perm/sec)   p_kst 1.361250e-02   p_cons 9.078375e-01   p_joint 4.052500e-02

Joint ci ratio: 6.365469e-02	ci left: 3.914480e-02	ci right 4.172937e-02	k: 3638	n:90000
Cons ci ratio: 4.151388e-03	ci left: 9.064182e-01	ci right 9.101999e-01	k: 81749	n:90000
KS ci ratio: 1.114654e-01	ci left: 1.279943e-02	ci right 1.432105e-02	k: 1219	n:90000
INPP5A   90000 perm   21 sec   (4279 perm/sec)   p_kst 1.354444e-02   p_cons 9.083222e-01   p_joint 4.042222e-02

Joint ci ratio: 6.024340e-02	ci left: 3.939496e-02	ci right 4.185178e-02	k: 4061	n:100000
Cons ci ratio: 3.947368e-03	ci left: 9.061313e-01	ci right 9.097250e-01	k: 90794	n:100000
KS ci ratio: 1.051010e-01	ci left: 1.299841e-02	ci right 1.445000e-02	k: 1371	n:100000
INPP5A   100000 perm   24 sec   (4196 perm/sec)   p_kst 1.371000e-02   p_cons 9.079400e-01   p_joint 4.061000e-02

Joint ci ratio: 5.778581e-02	ci left: 3.899301e-02	ci right 4.132223e-02	k: 4416	n:110000
Cons ci ratio: 3.767421e-03	ci left: 9.060475e-01	ci right 9.094764e-01	k: 99855	n:110000
KS ci ratio: 1.004871e-01	ci left: 1.295930e-02	ci right 1.433924e-02	k: 1500	n:110000
INPP5A   110000 perm   27 sec   (4121 perm/sec)   p_kst 1.363636e-02   p_cons 9.077727e-01   p_joint 4.014545e-02

Joint ci ratio: 5.858544e-02	ci left: 3.491196e-02	ci right 3.702720e-02	k: 4315	n:120000
Cons ci ratio: 3.734282e-03	ci left: 9.001024e-01	ci right 9.034782e-01	k: 108216	n:120000
KS ci ratio: 9.574936e-02	ci left: 1.311500e-02	ci right 1.444198e-02	k: 1652	n:120000
INPP5A   120000 perm   30 sec   (4047 perm/sec)   p_kst 1.376667e-02   p_cons 9.018000e-01   p_joint 3.595833e-02

Outputting figure to mutsig2_images.part000000000085/INPP5A.4_1299_120000_0.013767_0.9018_0.035958.png
                gene_name: INPP5A
               theta_stop: 0.096 
                    nperm: 120000 
                     p_ks: 0.014 
        ci_ks_bounds_left: 0.013 
       ci_ks_bounds_right: 0.014 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.036 
     ci_joint_bounds_left: 0.035 
    ci_joint_bounds_right: 0.037 

Current progress: 40 percent done.
INPPL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.832774e-02	ci left: 6.475005e-01	ci right 6.662080e-01	k: 6569	n:10000
Cons ci ratio: 5.915936e-02	ci left: 2.959840e-01	ci right 3.141297e-01	k: 3050	n:10000
KS ci ratio: 3.118285e-02	ci left: 6.027694e-01	ci right 6.219651e-01	k: 6124	n:10000
INPPL1   10000 perm   2 sec   (4465 perm/sec)   p_kst 6.124000e-01   p_cons 3.050000e-01   p_joint 6.569000e-01

Outputting figure to mutsig2_images.part000000000085/INPPL1.4_3889_10000_0.6124_0.305_0.6569.png
                gene_name: INPPL1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 42 percent done.
IL5RA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.365513e-02	ci left: 4.365237e-01	ci right 4.561076e-01	k: 4463	n:10000
Cons ci ratio: 2.862361e-02	ci left: 6.427720e-01	ci right 6.615393e-01	k: 6522	n:10000
KS ci ratio: 8.238416e-02	ci left: 1.769402e-01	ci right 1.922440e-01	k: 1845	n:10000
IL5RA   10000 perm   2 sec   (6481 perm/sec)   p_kst 1.845000e-01   p_cons 6.522000e-01   p_joint 4.463000e-01

Outputting figure to mutsig2_images.part000000000085/IL5RA.3_1329_10000_0.1845_0.6522_0.4463.png
                gene_name: IL5RA
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 44 percent done.
IMP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.226322e-01	ci left: 8.698787e-02	ci right 9.845066e-02	k: 926	n:10000
KS ci ratio: 1.400872e-02	ci left: 8.804271e-01	ci right 8.929466e-01	k: 8868	n:10000
IMP4   10000 perm   2 sec   (6059 perm/sec)   p_kst 8.868000e-01   p_cons 9.260000e-02   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 8.530316e-02	ci left: 9.141174e-02	ci right 9.960629e-02	k: 1909	n:20000
KS ci ratio: 9.867477e-03	ci left: 8.830902e-01	ci right 8.918968e-01	k: 17751	n:20000
IMP4   20000 perm   4 sec   (5450 perm/sec)   p_kst 8.875500e-01   p_cons 9.545000e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000085/IMP4.3_912_20000_0.88755_0.09545_1.png
                gene_name: IMP4
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.095 
      ci_cons_bounds_left: 0.091 
     ci_cons_bounds_right: 0.100 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 47 percent done.
IMPACT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.075657e-03	ci left: 9.447135e-01	ci right 9.534225e-01	k: 9492	n:10000
KS ci ratio: 2.746542e-02	ci left: 6.613903e-01	ci right 6.799102e-01	k: 6707	n:10000
IMPACT   10000 perm   2 sec   (6071 perm/sec)   p_kst 6.707000e-01   p_cons 9.492000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000085/IMPACT.3_1007_10000_0.6707_0.9492_1.png
                gene_name: IMPACT
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 49 percent done.
ING3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.910833e-02	ci left: 3.795277e-01	ci right 3.987369e-01	k: 3891	n:10000
Cons ci ratio: 2.226371e-02	ci left: 7.475594e-01	ci right 7.644912e-01	k: 7561	n:10000
KS ci ratio: 5.681654e-02	ci left: 3.132420e-01	ci right 3.316615e-01	k: 3224	n:10000
ING3   10000 perm   2 sec   (6070 perm/sec)   p_kst 3.224000e-01   p_cons 7.561000e-01   p_joint 3.891000e-01

Outputting figure to mutsig2_images.part000000000085/ING3.3_1321_10000_0.3224_0.7561_0.3891.png
                gene_name: ING3
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 51 percent done.
INHA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.205655e-02	ci left: 5.895172e-01	ci right 6.088250e-01	k: 5992	n:10000
Cons ci ratio: 6.242548e-02	ci left: 2.738884e-01	ci right 2.916384e-01	k: 2827	n:10000
KS ci ratio: 1.925724e-02	ci left: 7.977051e-01	ci right 8.133165e-01	k: 8056	n:10000
INHA   10000 perm   2 sec   (5950 perm/sec)   p_kst 8.056000e-01   p_cons 2.827000e-01   p_joint 5.992000e-01

Outputting figure to mutsig2_images.part000000000085/INHA.3_1109_10000_0.8056_0.2827_0.5992.png
                gene_name: INHA
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 53 percent done.
INMT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.379388e-02	ci left: 5.638367e-01	ci right 5.833204e-01	k: 5736	n:10000
Cons ci ratio: 3.122884e-02	ci left: 6.020664e-01	ci right 6.212685e-01	k: 6117	n:10000
KS ci ratio: 5.702521e-02	ci left: 3.116545e-01	ci right 3.300500e-01	k: 3208	n:10000
INMT   10000 perm   2 sec   (6137 perm/sec)   p_kst 3.208000e-01   p_cons 6.117000e-01   p_joint 5.736000e-01

Outputting figure to mutsig2_images.part000000000085/INMT.3_804_10000_0.3208_0.6117_0.5736.png
                gene_name: INMT
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 56 percent done.
INO80D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.473093e-02	ci left: 8.696873e-01	ci right 8.826927e-01	k: 8763	n:10000
Cons ci ratio: 8.409273e-02	ci left: 1.709408e-01	ci right 1.860470e-01	k: 1784	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
INO80D   10000 perm   2 sec   (5405 perm/sec)   p_kst 1   p_cons 1.784000e-01   p_joint 8.763000e-01

Outputting figure to mutsig2_images.part000000000085/INO80D.3_3120_10000_1_0.1784_0.8763.png
                gene_name: INO80D
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 58 percent done.
INSC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.256337e-02	ci left: 2.176360e-01	ci right 2.341240e-01	k: 2258	n:10000
Cons ci ratio: 6.020807e-02	ci left: 2.886490e-01	ci right 3.066690e-01	k: 2976	n:10000
KS ci ratio: 8.882633e-02	ci left: 1.557113e-01	ci right 1.702856e-01	k: 1629	n:10000
INSC   10000 perm   2 sec   (5590 perm/sec)   p_kst 1.629000e-01   p_cons 2.976000e-01   p_joint 2.258000e-01

Outputting figure to mutsig2_images.part000000000085/INSC.3_1792_10000_0.1629_0.2976_0.2258.png
                gene_name: INSC
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 60 percent done.
INTS10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.721990e-02	ci left: 3.982459e-01	ci right 4.176078e-01	k: 4079	n:10000
Cons ci ratio: 8.981334e-03	ci left: 9.457535e-01	ci right 9.543819e-01	k: 9502	n:10000
KS ci ratio: 9.977908e-02	ci left: 1.269892e-01	ci right 1.404250e-01	k: 1336	n:10000
INTS10   10000 perm   2 sec   (5975 perm/sec)   p_kst 1.336000e-01   p_cons 9.502000e-01   p_joint 4.079000e-01

Outputting figure to mutsig2_images.part000000000085/INTS10.3_2201_10000_0.1336_0.9502_0.4079.png
                gene_name: INTS10
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 62 percent done.
INTS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.528124e-02	ci left: 4.185735e-01	ci right 4.380683e-01	k: 4283	n:10000
Cons ci ratio: 2.181098e-02	ci left: 7.551466e-01	ci right 7.718996e-01	k: 7636	n:10000
KS ci ratio: 5.545381e-02	ci left: 3.238620e-01	ci right 3.424353e-01	k: 3331	n:10000
INTS3   10000 perm   2 sec   (5256 perm/sec)   p_kst 3.331000e-01   p_cons 7.636000e-01   p_joint 4.283000e-01

Outputting figure to mutsig2_images.part000000000085/INTS3.3_3249_10000_0.3331_0.7636_0.4283.png
                gene_name: INTS3
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 64 percent done.
INTS8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.160444e-02	ci left: 3.563500e-01	ci right 3.753282e-01	k: 3658	n:10000
Cons ci ratio: 7.779080e-02	ci left: 1.945626e-01	ci right 2.104111e-01	k: 2024	n:10000
KS ci ratio: 3.712477e-02	ci left: 5.172579e-01	ci right 5.369263e-01	k: 5271	n:10000
INTS8   10000 perm   2 sec   (5104 perm/sec)   p_kst 5.271000e-01   p_cons 2.024000e-01   p_joint 3.658000e-01

Outputting figure to mutsig2_images.part000000000085/INTS8.3_3096_10000_0.5271_0.2024_0.3658.png
                gene_name: INTS8
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 67 percent done.
INTU
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.245653e-02	ci left: 4.502943e-01	ci right 4.699290e-01	k: 4601	n:10000
Cons ci ratio: 7.873806e-03	ci left: 9.573329e-01	ci right 9.649955e-01	k: 9613	n:10000
KS ci ratio: 7.596042e-02	ci left: 2.022494e-01	ci right 2.183197e-01	k: 2102	n:10000
INTU   10000 perm   2 sec   (5037 perm/sec)   p_kst 2.102000e-01   p_cons 9.613000e-01   p_joint 4.601000e-01

Outputting figure to mutsig2_images.part000000000085/INTU.3_2893_10000_0.2102_0.9613_0.4601.png
                gene_name: INTU
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 69 percent done.
IL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.064286e-02	ci left: 7.746878e-01	ci right 7.909471e-01	k: 7829	n:10000
KS ci ratio: 7.649036e-02	ci left: 1.999823e-01	ci right 2.159882e-01	k: 2079	n:10000
IL4   10000 perm   1 sec   (6910 perm/sec)   p_kst 2.079000e-01   p_cons 7.829000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000085/IL4.2_478_10000_0.2079_0.7829_1.png
                gene_name: IL4
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
IL4R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.151493e-02	ci left: 7.601055e-01	ci right 7.767378e-01	k: 7685	n:10000
KS ci ratio: 1.983313e-02	ci left: 7.881691e-01	ci right 8.040580e-01	k: 7962	n:10000
IL4R   10000 perm   2 sec   (5521 perm/sec)   p_kst 7.962000e-01   p_cons 7.685000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000085/IL4R.2_2532_10000_0.7962_0.7685_1.png
                gene_name: IL4R
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
ILVBL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.481028e+00	ci left: 2.202202e-04	ci right 1.305486e-03	k: 6	n:10000
Cons ci ratio: 1.888152e-02	ci left: 8.038971e-01	ci right 8.193209e-01	k: 8117	n:10000
KS ci ratio: 1.481028e+00	ci left: 2.202202e-04	ci right 1.305486e-03	k: 6	n:10000
ILVBL   10000 perm   2 sec   (5883 perm/sec)   p_kst 6.000000e-04   p_cons 8.117000e-01   p_joint 6.000000e-04

Joint ci ratio: 1.011735e+00	ci left: 3.827477e-04	ci right 1.174202e-03	k: 14	n:20000
Cons ci ratio: 1.348826e-02	ci left: 8.030276e-01	ci right 8.139826e-01	k: 16171	n:20000
KS ci ratio: 1.011735e+00	ci left: 3.827477e-04	ci right 1.174202e-03	k: 14	n:20000
ILVBL   20000 perm   4 sec   (5292 perm/sec)   p_kst 7.000000e-04   p_cons 8.085500e-01   p_joint 7.000000e-04

Joint ci ratio: 7.684293e-01	ci left: 5.393597e-04	ci right 1.229920e-03	k: 25	n:30000
Cons ci ratio: 1.094125e-02	ci left: 8.060859e-01	ci right 8.149872e-01	k: 24317	n:30000
KS ci ratio: 7.684293e-01	ci left: 5.393597e-04	ci right 1.229920e-03	k: 25	n:30000
ILVBL   30000 perm   6 sec   (5026 perm/sec)   p_kst 8.333333e-04   p_cons 8.105667e-01   p_joint 8.333333e-04

Joint ci ratio: 6.820944e-01	ci left: 5.472618e-04	ci right 1.129175e-03	k: 32	n:40000
Cons ci ratio: 9.464300e-03	ci left: 8.070527e-01	ci right 8.147521e-01	k: 32437	n:40000
KS ci ratio: 6.820944e-01	ci left: 5.472618e-04	ci right 1.129175e-03	k: 32	n:40000
ILVBL   40000 perm   8 sec   (4858 perm/sec)   p_kst 8.000000e-04   p_cons 8.109250e-01   p_joint 8.000000e-04

Joint ci ratio: 6.274512e-01	ci left: 5.378756e-04	ci right 1.043012e-03	k: 38	n:50000
Cons ci ratio: 8.449230e-03	ci left: 8.080438e-01	ci right 8.149200e-01	k: 40575	n:50000
KS ci ratio: 6.274512e-01	ci left: 5.378756e-04	ci right 1.043012e-03	k: 38	n:50000
ILVBL   50000 perm   11 sec   (4718 perm/sec)   p_kst 7.600000e-04   p_cons 8.115000e-01   p_joint 7.600000e-04

Joint ci ratio: 5.841351e-01	ci left: 5.328901e-04	ci right 9.843421e-04	k: 44	n:60000
Cons ci ratio: 7.701276e-03	ci left: 8.088168e-01	ci right 8.150864e-01	k: 48718	n:60000
KS ci ratio: 5.841351e-01	ci left: 5.328901e-04	ci right 9.843421e-04	k: 44	n:60000
ILVBL   60000 perm   13 sec   (4601 perm/sec)   p_kst 7.333333e-04   p_cons 8.119667e-01   p_joint 7.333333e-04

Joint ci ratio: 5.541697e-01	ci left: 5.179073e-04	ci right 9.253328e-04	k: 49	n:70000
Cons ci ratio: 7.110857e-03	ci left: 8.098759e-01	ci right 8.156696e-01	k: 56895	n:70000
KS ci ratio: 5.541697e-01	ci left: 5.179073e-04	ci right 9.253328e-04	k: 49	n:70000
ILVBL   70000 perm   16 sec   (4487 perm/sec)   p_kst 7.000000e-04   p_cons 8.127857e-01   p_joint 7.000000e-04

Joint ci ratio: 5.236454e-01	ci left: 5.179598e-04	ci right 8.947830e-04	k: 55	n:80000
Cons ci ratio: 6.664662e-03	ci left: 8.094635e-01	ci right 8.148888e-01	k: 64975	n:80000
KS ci ratio: 5.236454e-01	ci left: 5.179598e-04	ci right 8.947830e-04	k: 55	n:80000
ILVBL   80000 perm   18 sec   (4390 perm/sec)   p_kst 6.875000e-04   p_cons 8.121875e-01   p_joint 6.875000e-04

Joint ci ratio: 4.717290e-01	ci left: 5.867647e-04	ci right 9.577498e-04	k: 68	n:90000
Cons ci ratio: 6.289191e-03	ci left: 8.093424e-01	ci right 8.144597e-01	k: 73072	n:90000
KS ci ratio: 4.717290e-01	ci left: 5.867647e-04	ci right 9.577498e-04	k: 68	n:90000
ILVBL   90000 perm   21 sec   (4289 perm/sec)   p_kst 7.555556e-04   p_cons 8.119111e-01   p_joint 7.555556e-04

Joint ci ratio: 4.586315e-01	ci left: 5.633970e-04	ci right 9.066362e-04	k: 72	n:100000
Cons ci ratio: 5.969789e-03	ci left: 8.093031e-01	ci right 8.141588e-01	k: 81174	n:100000
KS ci ratio: 4.586315e-01	ci left: 5.633970e-04	ci right 9.066362e-04	k: 72	n:100000
ILVBL   100000 perm   24 sec   (4200 perm/sec)   p_kst 7.200000e-04   p_cons 8.117400e-01   p_joint 7.200000e-04

Joint ci ratio: 4.381079e-01	ci left: 5.686313e-04	ci right 8.949897e-04	k: 79	n:110000
Cons ci ratio: 5.686786e-03	ci left: 8.096966e-01	ci right 8.143233e-01	k: 89322	n:110000
KS ci ratio: 4.381079e-01	ci left: 5.686313e-04	ci right 8.949897e-04	k: 79	n:110000
ILVBL   110000 perm   27 sec   (4117 perm/sec)   p_kst 7.181818e-04   p_cons 8.120182e-01   p_joint 7.181818e-04

Joint ci ratio: 4.153633e-01	ci left: 5.881950e-04	ci right 9.034103e-04	k: 88	n:120000
Cons ci ratio: 5.433411e-03	ci left: 8.104306e-01	ci right 8.148543e-01	k: 97518	n:120000
KS ci ratio: 4.153633e-01	ci left: 5.881950e-04	ci right 9.034103e-04	k: 88	n:120000
ILVBL   120000 perm   30 sec   (4034 perm/sec)   p_kst 7.333333e-04   p_cons 8.126500e-01   p_joint 7.333333e-04

Joint ci ratio: 4.107822e-01	ci left: 5.567328e-04	ci right 8.508962e-04	k: 90	n:130000
Cons ci ratio: 5.223085e-03	ci left: 8.103520e-01	ci right 8.146033e-01	k: 105623	n:130000
KS ci ratio: 4.107822e-01	ci left: 5.567328e-04	ci right 8.508962e-04	k: 90	n:130000
ILVBL   130000 perm   33 sec   (3957 perm/sec)   p_kst 6.923077e-04   p_cons 8.124846e-01   p_joint 6.923077e-04

Joint ci ratio: 3.978764e-01	ci left: 5.554650e-04	ci right 8.373110e-04	k: 96	n:140000
Cons ci ratio: 5.036374e-03	ci left: 8.102302e-01	ci right 8.143282e-01	k: 113720	n:140000
KS ci ratio: 3.978764e-01	ci left: 5.554650e-04	ci right 8.373110e-04	k: 96	n:140000
ILVBL   140000 perm   36 sec   (3885 perm/sec)   p_kst 6.857143e-04   p_cons 8.122857e-01   p_joint 6.857143e-04

Joint ci ratio: 3.753302e-01	ci left: 5.906662e-04	ci right 8.692198e-04	k: 108	n:150000
Cons ci ratio: 4.861967e-03	ci left: 8.105288e-01	ci right 8.144858e-01	k: 121877	n:150000
KS ci ratio: 3.753302e-01	ci left: 5.906662e-04	ci right 8.692198e-04	k: 108	n:150000
ILVBL   150000 perm   39 sec   (3819 perm/sec)   p_kst 7.200000e-04   p_cons 8.125133e-01   p_joint 7.200000e-04

Joint ci ratio: 3.622705e-01	ci left: 5.991174e-04	ci right 8.695056e-04	k: 116	n:160000
Cons ci ratio: 4.708943e-03	ci left: 8.105034e-01	ci right 8.143352e-01	k: 129988	n:160000
KS ci ratio: 3.622705e-01	ci left: 5.991174e-04	ci right 8.695056e-04	k: 116	n:160000
ILVBL   160000 perm   43 sec   (3753 perm/sec)   p_kst 7.250000e-04   p_cons 8.124250e-01   p_joint 7.250000e-04

Joint ci ratio: 3.577180e-01	ci left: 5.799251e-04	ci right 8.375967e-04	k: 119	n:170000
Cons ci ratio: 4.568719e-03	ci left: 8.105360e-01	ci right 8.142534e-01	k: 138108	n:170000
KS ci ratio: 3.577180e-01	ci left: 5.799251e-04	ci right 8.375967e-04	k: 119	n:170000
ILVBL   170000 perm   46 sec   (3687 perm/sec)   p_kst 7.000000e-04   p_cons 8.124000e-01   p_joint 7.000000e-04

Joint ci ratio: 3.490981e-01	ci left: 5.780815e-04	ci right 8.273442e-04	k: 125	n:180000
Cons ci ratio: 4.441372e-03	ci left: 8.104939e-01	ci right 8.141071e-01	k: 146215	n:180000
KS ci ratio: 3.490981e-01	ci left: 5.780815e-04	ci right 8.273442e-04	k: 125	n:180000
ILVBL   180000 perm   50 sec   (3625 perm/sec)   p_kst 6.944444e-04   p_cons 8.123056e-01   p_joint 6.944444e-04

Joint ci ratio: 3.311775e-01	ci left: 6.150531e-04	ci right 8.637469e-04	k: 139	n:190000
Cons ci ratio: 4.325902e-03	ci left: 8.103309e-01	ci right 8.138491e-01	k: 154298	n:190000
KS ci ratio: 3.311775e-01	ci left: 6.150531e-04	ci right 8.637469e-04	k: 139	n:190000
ILVBL   190000 perm   53 sec   (3565 perm/sec)   p_kst 7.315789e-04   p_cons 8.120947e-01   p_joint 7.315789e-04

Joint ci ratio: 3.243023e-01	ci left: 6.118324e-04	ci right 8.530194e-04	k: 145	n:200000
Cons ci ratio: 4.217883e-03	ci left: 8.102656e-01	ci right 8.136954e-01	k: 162397	n:200000
KS ci ratio: 3.243023e-01	ci left: 6.118324e-04	ci right 8.530194e-04	k: 145	n:200000
ILVBL   200000 perm   57 sec   (3509 perm/sec)   p_kst 7.250000e-04   p_cons 8.119850e-01   p_joint 7.250000e-04

Joint ci ratio: 3.188896e-01	ci left: 6.045849e-04	ci right 8.381251e-04	k: 150	n:210000
Cons ci ratio: 4.117698e-03	ci left: 8.101980e-01	ci right 8.135458e-01	k: 170494	n:210000
KS ci ratio: 3.188896e-01	ci left: 6.045849e-04	ci right 8.381251e-04	k: 150	n:210000
ILVBL   210000 perm   61 sec   (3452 perm/sec)   p_kst 7.142857e-04   p_cons 8.118762e-01   p_joint 7.142857e-04

Joint ci ratio: 3.078702e-01	ci left: 6.231739e-04	ci right 8.539456e-04	k: 161	n:220000
Cons ci ratio: 4.027620e-03	ci left: 8.098867e-01	ci right 8.131597e-01	k: 178536	n:220000
KS ci ratio: 3.078702e-01	ci left: 6.231739e-04	ci right 8.539456e-04	k: 161	n:220000
ILVBL   220000 perm   65 sec   (3403 perm/sec)   p_kst 7.318182e-04   p_cons 8.115273e-01   p_joint 7.318182e-04

Joint ci ratio: 3.014270e-01	ci left: 6.241882e-04	ci right 8.495714e-04	k: 168	n:230000
Cons ci ratio: 3.938433e-03	ci left: 8.099740e-01	ci right 8.131746e-01	k: 186663	n:230000
KS ci ratio: 3.014270e-01	ci left: 6.241882e-04	ci right 8.495714e-04	k: 168	n:230000
ILVBL   230000 perm   69 sec   (3350 perm/sec)   p_kst 7.304348e-04   p_cons 8.115783e-01   p_joint 7.304348e-04

Joint ci ratio: 2.920694e-01	ci left: 6.406036e-04	ci right 8.634061e-04	k: 179	n:240000
Cons ci ratio: 3.853869e-03	ci left: 8.101384e-01	ci right 8.132707e-01	k: 194810	n:240000
KS ci ratio: 2.920694e-01	ci left: 6.406036e-04	ci right 8.634061e-04	k: 179	n:240000
ILVBL   240000 perm   73 sec   (3303 perm/sec)   p_kst 7.458333e-04   p_cons 8.117083e-01   p_joint 7.458333e-04

Joint ci ratio: 2.827924e-01	ci left: 6.595211e-04	ci right 8.803186e-04	k: 191	n:250000
Cons ci ratio: 3.776404e-03	ci left: 8.101378e-01	ci right 8.132070e-01	k: 202919	n:250000
KS ci ratio: 2.827924e-01	ci left: 6.595211e-04	ci right 8.803186e-04	k: 191	n:250000
ILVBL   250000 perm   77 sec   (3255 perm/sec)   p_kst 7.640000e-04   p_cons 8.116760e-01   p_joint 7.640000e-04

Joint ci ratio: 2.757025e-01	ci left: 6.699242e-04	ci right 8.876070e-04	k: 201	n:260000
Cons ci ratio: 3.706924e-03	ci left: 8.098485e-01	ci right 8.128599e-01	k: 210953	n:260000
KS ci ratio: 2.757025e-01	ci left: 6.699242e-04	ci right 8.876070e-04	k: 201	n:260000
ILVBL   260000 perm   81 sec   (3210 perm/sec)   p_kst 7.730769e-04   p_cons 8.113577e-01   p_joint 7.730769e-04

Joint ci ratio: 2.678590e-01	ci left: 6.865297e-04	ci right 9.021966e-04	k: 213	n:270000
Cons ci ratio: 3.636994e-03	ci left: 8.099304e-01	ci right 8.128851e-01	k: 219081	n:270000
KS ci ratio: 2.678590e-01	ci left: 6.865297e-04	ci right 9.021966e-04	k: 213	n:270000
ILVBL   270000 perm   85 sec   (3163 perm/sec)   p_kst 7.888889e-04   p_cons 8.114111e-01   p_joint 7.888889e-04

Joint ci ratio: 2.635832e-01	ci left: 6.853456e-04	ci right 8.966368e-04	k: 220	n:280000
Cons ci ratio: 3.569753e-03	ci left: 8.101036e-01	ci right 8.130042e-01	k: 227236	n:280000
KS ci ratio: 2.635832e-01	ci left: 6.853456e-04	ci right 8.966368e-04	k: 220	n:280000
ILVBL   280000 perm   90 sec   (3118 perm/sec)   p_kst 7.857143e-04   p_cons 8.115571e-01   p_joint 7.857143e-04

Joint ci ratio: 2.600772e-01	ci left: 6.810446e-04	ci right 8.877632e-04	k: 226	n:290000
Cons ci ratio: 3.507569e-03	ci left: 8.101374e-01	ci right 8.129874e-01	k: 235354	n:290000
KS ci ratio: 2.600772e-01	ci left: 6.810446e-04	ci right 8.877632e-04	k: 226	n:290000
ILVBL   290000 perm   94 sec   (3075 perm/sec)   p_kst 7.793103e-04   p_cons 8.115655e-01   p_joint 7.793103e-04

Joint ci ratio: 2.572606e-01	ci left: 6.739289e-04	ci right 8.759165e-04	k: 231	n:300000
Cons ci ratio: 3.448676e-03	ci left: 8.101560e-01	ci right 8.129580e-01	k: 243468	n:300000
KS ci ratio: 2.572606e-01	ci left: 6.739289e-04	ci right 8.759165e-04	k: 231	n:300000
ILVBL   300000 perm   99 sec   (3033 perm/sec)   p_kst 7.700000e-04   p_cons 8.115600e-01   p_joint 7.700000e-04

Joint ci ratio: 2.508531e-01	ci left: 6.884352e-04	ci right 8.888291e-04	k: 243	n:310000
Cons ci ratio: 3.394049e-03	ci left: 8.100475e-01	ci right 8.128047e-01	k: 251543	n:310000
KS ci ratio: 2.508531e-01	ci left: 6.884352e-04	ci right 8.888291e-04	k: 243	n:310000
ILVBL   310000 perm   104 sec   (2991 perm/sec)   p_kst 7.838710e-04   p_cons 8.114290e-01   p_joint 7.838710e-04

Joint ci ratio: 2.488234e-01	ci left: 6.786386e-04	ci right 8.743349e-04	k: 247	n:320000
Cons ci ratio: 3.339480e-03	ci left: 8.101718e-01	ci right 8.128850e-01	k: 259690	n:320000
KS ci ratio: 2.488234e-01	ci left: 6.786386e-04	ci right 8.743349e-04	k: 247	n:320000
ILVBL   320000 perm   108 sec   (2950 perm/sec)   p_kst 7.718750e-04   p_cons 8.115313e-01   p_joint 7.718750e-04

Joint ci ratio: 2.449046e-01	ci left: 6.808167e-04	ci right 8.735789e-04	k: 255	n:330000
Cons ci ratio: 3.289154e-03	ci left: 8.101310e-01	ci right 8.128030e-01	k: 267785	n:330000
KS ci ratio: 2.449046e-01	ci left: 6.808167e-04	ci right 8.735789e-04	k: 255	n:330000
ILVBL   330000 perm   113 sec   (2911 perm/sec)   p_kst 7.727273e-04   p_cons 8.114697e-01   p_joint 7.727273e-04

Joint ci ratio: 2.416237e-01	ci left: 6.801260e-04	ci right 8.697262e-04	k: 262	n:340000
Cons ci ratio: 3.240974e-03	ci left: 8.100987e-01	ci right 8.127313e-01	k: 275882	n:340000
KS ci ratio: 2.416237e-01	ci left: 6.801260e-04	ci right 8.697262e-04	k: 262	n:340000
ILVBL   340000 perm   118 sec   (2873 perm/sec)   p_kst 7.705882e-04   p_cons 8.114176e-01   p_joint 7.705882e-04

Joint ci ratio: 2.393601e-01	ci left: 6.741185e-04	ci right 8.600222e-04	k: 267	n:350000
Cons ci ratio: 3.193837e-03	ci left: 8.101659e-01	ci right 8.127604e-01	k: 284013	n:350000
KS ci ratio: 2.393601e-01	ci left: 6.741185e-04	ci right 8.600222e-04	k: 267	n:350000
ILVBL   350000 perm   123 sec   (2835 perm/sec)   p_kst 7.628571e-04   p_cons 8.114657e-01   p_joint 7.628571e-04

Joint ci ratio: 2.358655e-01	ci left: 6.762924e-04	ci right 8.596753e-04	k: 275	n:360000
Cons ci ratio: 3.149042e-03	ci left: 8.101962e-01	ci right 8.127543e-01	k: 292132	n:360000
KS ci ratio: 2.358655e-01	ci left: 6.762924e-04	ci right 8.596753e-04	k: 275	n:360000
ILVBL   360000 perm   129 sec   (2799 perm/sec)   p_kst 7.638889e-04   p_cons 8.114778e-01   p_joint 7.638889e-04

Joint ci ratio: 2.317045e-01	ci left: 6.834587e-04	ci right 8.650475e-04	k: 285	n:370000
Cons ci ratio: 3.104872e-03	ci left: 8.103444e-01	ci right 8.128670e-01	k: 300295	n:370000
KS ci ratio: 2.317045e-01	ci left: 6.834587e-04	ci right 8.650475e-04	k: 285	n:370000
ILVBL   370000 perm   134 sec   (2764 perm/sec)   p_kst 7.702703e-04   p_cons 8.116081e-01   p_joint 7.702703e-04

Joint ci ratio: 2.293122e-01	ci left: 6.803506e-04	ci right 8.589830e-04	k: 291	n:380000
Cons ci ratio: 3.062087e-03	ci left: 8.105272e-01	ci right 8.130155e-01	k: 308474	n:380000
KS ci ratio: 2.293122e-01	ci left: 6.803506e-04	ci right 8.589830e-04	k: 291	n:380000
ILVBL   380000 perm   139 sec   (2729 perm/sec)   p_kst 7.657895e-04   p_cons 8.117737e-01   p_joint 7.657895e-04

Joint ci ratio: 2.247395e-01	ci left: 6.919257e-04	ci right 8.694731e-04	k: 303	n:390000
Cons ci ratio: 3.022923e-03	ci left: 8.105080e-01	ci right 8.129643e-01	k: 316578	n:390000
KS ci ratio: 2.247395e-01	ci left: 6.919257e-04	ci right 8.694731e-04	k: 303	n:390000
ILVBL   390000 perm   145 sec   (2695 perm/sec)   p_kst 7.769231e-04   p_cons 8.117385e-01   p_joint 7.769231e-04

Joint ci ratio: 2.225545e-01	ci left: 6.887872e-04	ci right 8.635754e-04	k: 309	n:400000
Cons ci ratio: 2.985419e-03	ci left: 8.104699e-01	ci right 8.128956e-01	k: 324674	n:400000
KS ci ratio: 2.225545e-01	ci left: 6.887872e-04	ci right 8.635754e-04	k: 309	n:400000
ILVBL   400000 perm   150 sec   (2663 perm/sec)   p_kst 7.725000e-04   p_cons 8.116850e-01   p_joint 7.725000e-04

Joint ci ratio: 2.187071e-01	ci left: 6.973346e-04	ci right 8.708216e-04	k: 320	n:410000
Cons ci ratio: 2.949113e-03	ci left: 8.104510e-01	ci right 8.128470e-01	k: 332777	n:410000
KS ci ratio: 2.187071e-01	ci left: 6.973346e-04	ci right 8.708216e-04	k: 320	n:410000
ILVBL   410000 perm   156 sec   (2631 perm/sec)   p_kst 7.804878e-04   p_cons 8.116512e-01   p_joint 7.804878e-04

Joint ci ratio: 2.176935e-01	ci left: 6.874835e-04	ci right 8.576209e-04	k: 323	n:420000
Cons ci ratio: 2.912375e-03	ci left: 8.106146e-01	ci right 8.129811e-01	k: 340956	n:420000
KS ci ratio: 2.176935e-01	ci left: 6.874835e-04	ci right 8.576209e-04	k: 323	n:420000
ILVBL   420000 perm   162 sec   (2600 perm/sec)   p_kst 7.690476e-04   p_cons 8.118000e-01   p_joint 7.690476e-04

Joint ci ratio: 2.160337e-01	ci left: 6.824917e-04	ci right 8.499350e-04	k: 328	n:430000
Cons ci ratio: 2.877281e-03	ci left: 8.107380e-01	ci right 8.130764e-01	k: 349121	n:430000
KS ci ratio: 2.160337e-01	ci left: 6.824917e-04	ci right 8.499350e-04	k: 328	n:430000
ILVBL   430000 perm   167 sec   (2569 perm/sec)   p_kst 7.627907e-04   p_cons 8.119093e-01   p_joint 7.627907e-04

Joint ci ratio: 2.144112e-01	ci left: 6.777315e-04	ci right 8.425938e-04	k: 333	n:440000
Cons ci ratio: 2.844483e-03	ci left: 8.107421e-01	ci right 8.130538e-01	k: 357236	n:440000
KS ci ratio: 2.144112e-01	ci left: 6.777315e-04	ci right 8.425938e-04	k: 333	n:440000
ILVBL   440000 perm   173 sec   (2540 perm/sec)   p_kst 7.568182e-04   p_cons 8.119000e-01   p_joint 7.568182e-04

Joint ci ratio: 2.115792e-01	ci left: 6.816041e-04	ci right 8.449346e-04	k: 342	n:450000
Cons ci ratio: 2.812618e-03	ci left: 8.107640e-01	ci right 8.130498e-01	k: 365359	n:450000
KS ci ratio: 2.115792e-01	ci left: 6.816041e-04	ci right 8.449346e-04	k: 342	n:450000
ILVBL   450000 perm   179 sec   (2513 perm/sec)   p_kst 7.600000e-04   p_cons 8.119089e-01   p_joint 7.600000e-04

Joint ci ratio: 2.091541e-01	ci left: 6.832618e-04	ci right 8.448725e-04	k: 350	n:460000
Cons ci ratio: 2.783128e-03	ci left: 8.106391e-01	ci right 8.129005e-01	k: 373415	n:460000
KS ci ratio: 2.091541e-01	ci left: 6.832618e-04	ci right 8.448725e-04	k: 350	n:460000
ILVBL   460000 perm   185 sec   (2484 perm/sec)   p_kst 7.608696e-04   p_cons 8.117717e-01   p_joint 7.608696e-04

Joint ci ratio: 2.065228e-01	ci left: 6.868768e-04	ci right 8.470405e-04	k: 359	n:470000
Cons ci ratio: 2.753700e-03	ci left: 8.106134e-01	ci right 8.128508e-01	k: 381515	n:470000
KS ci ratio: 2.065228e-01	ci left: 6.868768e-04	ci right 8.470405e-04	k: 359	n:470000
ILVBL   470000 perm   191 sec   (2457 perm/sec)   p_kst 7.638298e-04   p_cons 8.117340e-01   p_joint 7.638298e-04

Joint ci ratio: 2.039884e-01	ci left: 6.903533e-04	ci right 8.491060e-04	k: 368	n:480000
Cons ci ratio: 2.726357e-03	ci left: 8.104575e-01	ci right 8.126721e-01	k: 389552	n:480000
KS ci ratio: 2.039884e-01	ci left: 6.903533e-04	ci right 8.491060e-04	k: 368	n:480000
ILVBL   480000 perm   198 sec   (2430 perm/sec)   p_kst 7.666667e-04   p_cons 8.115667e-01   p_joint 7.666667e-04

Joint ci ratio: 2.012788e-01	ci left: 6.956374e-04	ci right 8.532193e-04	k: 378	n:490000
Cons ci ratio: 2.699162e-03	ci left: 8.103816e-01	ci right 8.125739e-01	k: 397625	n:490000
KS ci ratio: 2.012788e-01	ci left: 6.956374e-04	ci right 8.532193e-04	k: 378	n:490000
ILVBL   490000 perm   204 sec   (2403 perm/sec)   p_kst 7.714286e-04   p_cons 8.114796e-01   p_joint 7.714286e-04

Joint ci ratio: 1.991875e-01	ci left: 6.969226e-04	ci right 8.529560e-04	k: 386	n:500000
Cons ci ratio: 2.671157e-03	ci left: 8.104933e-01	ci right 8.126631e-01	k: 405790	n:500000
KS ci ratio: 1.991875e-01	ci left: 6.969226e-04	ci right 8.529560e-04	k: 386	n:500000
ILVBL   500000 perm   210 sec   (2377 perm/sec)   p_kst 7.720000e-04   p_cons 8.115800e-01   p_joint 7.720000e-04

Joint ci ratio: 1.971600e-01	ci left: 6.981654e-04	ci right 8.526949e-04	k: 394	n:510000
Cons ci ratio: 2.643835e-03	ci left: 8.106204e-01	ci right 8.127683e-01	k: 413965	n:510000
KS ci ratio: 1.971600e-01	ci left: 6.981654e-04	ci right 8.526949e-04	k: 394	n:510000
ILVBL   510000 perm   217 sec   (2352 perm/sec)   p_kst 7.725490e-04   p_cons 8.116961e-01   p_joint 7.725490e-04

Joint ci ratio: 1.954361e-01	ci left: 6.975391e-04	ci right 8.504193e-04	k: 401	n:520000
Cons ci ratio: 2.618899e-03	ci left: 8.105595e-01	ci right 8.126870e-01	k: 422045	n:520000
KS ci ratio: 1.954361e-01	ci left: 6.975391e-04	ci right 8.504193e-04	k: 401	n:520000
ILVBL   520000 perm   223 sec   (2327 perm/sec)   p_kst 7.711538e-04   p_cons 8.116250e-01   p_joint 7.711538e-04

Joint ci ratio: 1.918875e-01	ci left: 7.113082e-04	ci right 8.640454e-04	k: 416	n:530000
Cons ci ratio: 2.594783e-03	ci left: 8.104860e-01	ci right 8.125936e-01	k: 430117	n:530000
KS ci ratio: 1.918875e-01	ci left: 7.113082e-04	ci right 8.640454e-04	k: 416	n:530000
ILVBL   530000 perm   230 sec   (2302 perm/sec)   p_kst 7.849057e-04   p_cons 8.115415e-01   p_joint 7.849057e-04

Joint ci ratio: 1.905221e-01	ci left: 7.087150e-04	ci right 8.596870e-04	k: 422	n:540000
Cons ci ratio: 2.571305e-03	ci left: 8.104171e-01	ci right 8.125055e-01	k: 438190	n:540000
KS ci ratio: 1.905221e-01	ci left: 7.087150e-04	ci right 8.596870e-04	k: 422	n:540000
ILVBL   540000 perm   237 sec   (2278 perm/sec)   p_kst 7.814815e-04   p_cons 8.114630e-01   p_joint 7.814815e-04

Joint ci ratio: 1.883088e-01	ci left: 7.131491e-04	ci right 8.630991e-04	k: 432	n:550000
Cons ci ratio: 2.547196e-03	ci left: 8.105021e-01	ci right 8.125710e-01	k: 446346	n:550000
KS ci ratio: 1.883088e-01	ci left: 7.131491e-04	ci right 8.630991e-04	k: 432	n:550000
ILVBL   550000 perm   244 sec   (2254 perm/sec)   p_kst 7.854545e-04   p_cons 8.115382e-01   p_joint 7.854545e-04

Joint ci ratio: 1.859610e-01	ci left: 7.191372e-04	ci right 8.682483e-04	k: 443	n:560000
Cons ci ratio: 2.525299e-03	ci left: 8.103962e-01	ci right 8.124470e-01	k: 454397	n:560000
KS ci ratio: 1.859610e-01	ci left: 7.191372e-04	ci right 8.682483e-04	k: 443	n:560000
ILVBL   560000 perm   251 sec   (2231 perm/sec)   p_kst 7.910714e-04   p_cons 8.114232e-01   p_joint 7.910714e-04

Joint ci ratio: 1.839013e-01	ci left: 7.232526e-04	ci right 8.713709e-04	k: 453	n:570000
Cons ci ratio: 2.503928e-03	ci left: 8.102976e-01	ci right 8.123308e-01	k: 462450	n:570000
KS ci ratio: 1.839013e-01	ci left: 7.232526e-04	ci right 8.713709e-04	k: 453	n:570000
ILVBL   570000 perm   258 sec   (2210 perm/sec)   p_kst 7.947368e-04   p_cons 8.113158e-01   p_joint 7.947368e-04

Joint ci ratio: 1.817126e-01	ci left: 7.288806e-04	ci right 8.761794e-04	k: 464	n:580000
Cons ci ratio: 2.482726e-03	ci left: 8.102474e-01	ci right 8.122632e-01	k: 470529	n:580000
KS ci ratio: 1.817126e-01	ci left: 7.288806e-04	ci right 8.761794e-04	k: 464	n:580000
ILVBL   580000 perm   265 sec   (2189 perm/sec)   p_kst 8.000000e-04   p_cons 8.112569e-01   p_joint 8.000000e-04

Joint ci ratio: 1.794117e-01	ci left: 7.359467e-04	ci right 8.825858e-04	k: 476	n:590000
Cons ci ratio: 2.461195e-03	ci left: 8.103060e-01	ci right 8.123045e-01	k: 478671	n:590000
KS ci ratio: 1.794117e-01	ci left: 7.359467e-04	ci right 8.825858e-04	k: 476	n:590000
ILVBL   590000 perm   272 sec   (2168 perm/sec)   p_kst 8.067797e-04   p_cons 8.113068e-01   p_joint 8.067797e-04

Joint ci ratio: 1.786648e-01	ci left: 7.300486e-04	ci right 8.748415e-04	k: 480	n:600000
Cons ci ratio: 2.440082e-03	ci left: 8.103794e-01	ci right 8.123609e-01	k: 486823	n:600000
KS ci ratio: 1.786648e-01	ci left: 7.300486e-04	ci right 8.748415e-04	k: 480	n:600000
ILVBL   600000 perm   279 sec   (2147 perm/sec)   p_kst 8.000000e-04   p_cons 8.113717e-01   p_joint 8.000000e-04

Joint ci ratio: 1.770163e-01	ci left: 7.321780e-04	ci right 8.759099e-04	k: 489	n:610000
Cons ci ratio: 2.420384e-03	ci left: 8.103388e-01	ci right 8.123041e-01	k: 494907	n:610000
KS ci ratio: 1.770163e-01	ci left: 7.321780e-04	ci right 8.759099e-04	k: 489	n:610000
ILVBL   610000 perm   287 sec   (2126 perm/sec)   p_kst 8.016393e-04   p_cons 8.113230e-01   p_joint 8.016393e-04

Joint ci ratio: 1.764776e-01	ci left: 7.249931e-04	ci right 8.668352e-04	k: 492	n:620000
Cons ci ratio: 2.401155e-03	ci left: 8.102996e-01	ci right 8.122491e-01	k: 502991	n:620000
KS ci ratio: 1.764776e-01	ci left: 7.249931e-04	ci right 8.668352e-04	k: 492	n:620000
ILVBL   620000 perm   294 sec   (2106 perm/sec)   p_kst 7.935484e-04   p_cons 8.112758e-01   p_joint 7.935484e-04

Joint ci ratio: 1.747142e-01	ci left: 7.286608e-04	ci right 8.696457e-04	k: 502	n:630000
Cons ci ratio: 2.381784e-03	ci left: 8.103380e-01	ci right 8.122719e-01	k: 511123	n:630000
KS ci ratio: 1.747142e-01	ci left: 7.286608e-04	ci right 8.696457e-04	k: 502	n:630000
ILVBL   630000 perm   302 sec   (2088 perm/sec)   p_kst 7.968254e-04   p_cons 8.113063e-01   p_joint 7.968254e-04

Joint ci ratio: 1.731717e-01	ci left: 7.307258e-04	ci right 8.707315e-04	k: 511	n:640000
Cons ci ratio: 2.363417e-03	ci left: 8.103048e-01	ci right 8.122237e-01	k: 519210	n:640000
KS ci ratio: 1.731717e-01	ci left: 7.307258e-04	ci right 8.707315e-04	k: 511	n:640000
ILVBL   640000 perm   309 sec   (2068 perm/sec)   p_kst 7.984375e-04   p_cons 8.112656e-01   p_joint 7.984375e-04

Joint ci ratio: 1.718345e-01	ci left: 7.312602e-04	ci right 8.701742e-04	k: 519	n:650000
Cons ci ratio: 2.345834e-03	ci left: 8.102249e-01	ci right 8.121293e-01	k: 527266	n:650000
KS ci ratio: 1.718345e-01	ci left: 7.312602e-04	ci right 8.701742e-04	k: 519	n:650000
ILVBL   650000 perm   317 sec   (2049 perm/sec)   p_kst 7.984615e-04   p_cons 8.111785e-01   p_joint 7.984615e-04

Joint ci ratio: 1.703663e-01	ci left: 7.332330e-04	ci right 8.712094e-04	k: 528	n:660000
Cons ci ratio: 2.327854e-03	ci left: 8.102507e-01	ci right 8.121405e-01	k: 535390	n:660000
KS ci ratio: 1.703663e-01	ci left: 7.332330e-04	ci right 8.712094e-04	k: 528	n:660000
ILVBL   660000 perm   325 sec   (2030 perm/sec)   p_kst 8.000000e-04   p_cons 8.111970e-01   p_joint 8.000000e-04

Joint ci ratio: 1.692503e-01	ci left: 7.322929e-04	ci right 8.690977e-04	k: 535	n:670000
Cons ci ratio: 2.311036e-03	ci left: 8.101756e-01	ci right 8.120516e-01	k: 543447	n:670000
KS ci ratio: 1.692503e-01	ci left: 7.322929e-04	ci right 8.690977e-04	k: 535	n:670000
ILVBL   670000 perm   333 sec   (2012 perm/sec)   p_kst 7.985075e-04   p_cons 8.111149e-01   p_joint 7.985075e-04

Joint ci ratio: 1.680012e-01	ci left: 7.327921e-04	ci right 8.685776e-04	k: 543	n:680000
Cons ci ratio: 2.294147e-03	ci left: 8.101602e-01	ci right 8.120224e-01	k: 551543	n:680000
KS ci ratio: 1.680012e-01	ci left: 7.327921e-04	ci right 8.685776e-04	k: 543	n:680000
ILVBL   680000 perm   341 sec   (1994 perm/sec)   p_kst 7.985294e-04   p_cons 8.110926e-01   p_joint 7.985294e-04

Joint ci ratio: 1.661779e-01	ci left: 7.388362e-04	ci right 8.741072e-04	k: 555	n:690000
Cons ci ratio: 2.277622e-03	ci left: 8.101453e-01	ci right 8.119941e-01	k: 559639	n:690000
KS ci ratio: 1.661779e-01	ci left: 7.388362e-04	ci right 8.741072e-04	k: 555	n:690000
ILVBL   690000 perm   349 sec   (1976 perm/sec)   p_kst 8.043478e-04   p_cons 8.110710e-01   p_joint 8.043478e-04

Joint ci ratio: 1.649951e-01	ci left: 7.392364e-04	ci right 8.735217e-04	k: 563	n:700000
Cons ci ratio: 2.261166e-03	ci left: 8.101696e-01	ci right 8.120050e-01	k: 567762	n:700000
KS ci ratio: 1.649951e-01	ci left: 7.392364e-04	ci right 8.735217e-04	k: 563	n:700000
ILVBL   700000 perm   358 sec   (1958 perm/sec)   p_kst 8.042857e-04   p_cons 8.110886e-01   p_joint 8.042857e-04

Joint ci ratio: 1.638373e-01	ci left: 7.396286e-04	ci right 8.729494e-04	k: 571	n:710000
Cons ci ratio: 2.245163e-03	ci left: 8.101791e-01	ci right 8.120015e-01	k: 575875	n:710000
KS ci ratio: 1.638373e-01	ci left: 7.396286e-04	ci right 8.729494e-04	k: 571	n:710000
ILVBL   710000 perm   366 sec   (1941 perm/sec)   p_kst 8.042254e-04   p_cons 8.110915e-01   p_joint 8.042254e-04

Joint ci ratio: 1.622840e-01	ci left: 7.440105e-04	ci right 8.767256e-04	k: 582	n:720000
Cons ci ratio: 2.229830e-03	ci left: 8.101424e-01	ci right 8.119523e-01	k: 583955	n:720000
KS ci ratio: 1.622840e-01	ci left: 7.440105e-04	ci right 8.767256e-04	k: 582	n:720000
ILVBL   720000 perm   374 sec   (1924 perm/sec)   p_kst 8.083333e-04   p_cons 8.110486e-01   p_joint 8.083333e-04

Joint ci ratio: 1.615928e-01	ci left: 7.403902e-04	ci right 8.718424e-04	k: 587	n:730000
Cons ci ratio: 2.214262e-03	ci left: 8.101823e-01	ci right 8.119796e-01	k: 592090	n:730000
KS ci ratio: 1.615928e-01	ci left: 7.403902e-04	ci right 8.718424e-04	k: 587	n:730000
ILVBL   730000 perm   383 sec   (1907 perm/sec)   p_kst 8.041096e-04   p_cons 8.110822e-01   p_joint 8.041096e-04

Joint ci ratio: 1.605047e-01	ci left: 7.407600e-04	ci right 8.713069e-04	k: 595	n:740000
Cons ci ratio: 2.199422e-03	ci left: 8.101643e-01	ci right 8.119495e-01	k: 600183	n:740000
KS ci ratio: 1.605047e-01	ci left: 7.407600e-04	ci right 8.713069e-04	k: 595	n:740000
ILVBL   740000 perm   391 sec   (1891 perm/sec)   p_kst 8.040541e-04   p_cons 8.110581e-01   p_joint 8.040541e-04

Joint ci ratio: 1.593063e-01	ci left: 7.424031e-04	ci right 8.721692e-04	k: 604	n:750000
Cons ci ratio: 2.184573e-03	ci left: 8.101896e-01	ci right 8.119627e-01	k: 608308	n:750000
KS ci ratio: 1.593063e-01	ci left: 7.424031e-04	ci right 8.721692e-04	k: 604	n:750000
ILVBL   750000 perm   400 sec   (1875 perm/sec)   p_kst 8.053333e-04   p_cons 8.110773e-01   p_joint 8.053333e-04

Joint ci ratio: 1.582633e-01	ci left: 7.427427e-04	ci right 8.716375e-04	k: 612	n:760000
Cons ci ratio: 2.170375e-03	ci left: 8.101641e-01	ci right 8.119256e-01	k: 616395	n:760000
KS ci ratio: 1.582633e-01	ci left: 7.427427e-04	ci right 8.716375e-04	k: 612	n:760000
ILVBL   760000 perm   409 sec   (1859 perm/sec)   p_kst 8.052632e-04   p_cons 8.110461e-01   p_joint 8.052632e-04

Joint ci ratio: 1.574947e-01	ci left: 7.405810e-04	ci right 8.684175e-04	k: 618	n:770000
Cons ci ratio: 2.156642e-03	ci left: 8.101120e-01	ci right 8.118623e-01	k: 624461	n:770000
KS ci ratio: 1.574947e-01	ci left: 7.405810e-04	ci right 8.684175e-04	k: 618	n:770000
ILVBL   770000 perm   417 sec   (1845 perm/sec)   p_kst 8.025974e-04   p_cons 8.109883e-01   p_joint 8.025974e-04

Joint ci ratio: 1.559895e-01	ci left: 7.458677e-04	ci right 8.732713e-04	k: 630	n:780000
Cons ci ratio: 2.142870e-03	ci left: 8.101037e-01	ci right 8.118427e-01	k: 632560	n:780000
KS ci ratio: 1.559895e-01	ci left: 7.458677e-04	ci right 8.732713e-04	k: 630	n:780000
ILVBL   780000 perm   426 sec   (1830 perm/sec)   p_kst 8.076923e-04   p_cons 8.109744e-01   p_joint 8.076923e-04

Joint ci ratio: 1.548887e-01	ci left: 7.473757e-04	ci right 8.740523e-04	k: 639	n:790000
Cons ci ratio: 2.129297e-03	ci left: 8.101045e-01	ci right 8.118325e-01	k: 640666	n:790000
KS ci ratio: 1.548887e-01	ci left: 7.473757e-04	ci right 8.740523e-04	k: 639	n:790000
ILVBL   790000 perm   435 sec   (1814 perm/sec)   p_kst 8.088608e-04   p_cons 8.109696e-01   p_joint 8.088608e-04

Joint ci ratio: 1.538109e-01	ci left: 7.488490e-04	ci right 8.748108e-04	k: 648	n:800000
Cons ci ratio: 2.116022e-03	ci left: 8.100990e-01	ci right 8.118162e-01	k: 648767	n:800000
KS ci ratio: 1.538109e-01	ci left: 7.488490e-04	ci right 8.748108e-04	k: 648	n:800000
ILVBL   800000 perm   445 sec   (1799 perm/sec)   p_kst 8.100000e-04   p_cons 8.109587e-01   p_joint 8.100000e-04

Joint ci ratio: 1.529882e-01	ci left: 7.479142e-04	ci right 8.729841e-04	k: 655	n:810000
Cons ci ratio: 2.102747e-03	ci left: 8.101296e-01	ci right 8.118361e-01	k: 656897	n:810000
KS ci ratio: 1.529882e-01	ci left: 7.479142e-04	ci right 8.729841e-04	k: 655	n:810000
ILVBL   810000 perm   454 sec   (1784 perm/sec)   p_kst 8.086420e-04   p_cons 8.109840e-01   p_joint 8.086420e-04

Joint ci ratio: 1.516075e-01	ci left: 7.528699e-04	ci right 8.775292e-04	k: 667	n:820000
Cons ci ratio: 2.089586e-03	ci left: 8.101790e-01	ci right 8.118749e-01	k: 665043	n:820000
KS ci ratio: 1.516075e-01	ci left: 7.528699e-04	ci right 8.775292e-04	k: 667	n:820000
ILVBL   820000 perm   463 sec   (1770 perm/sec)   p_kst 8.134146e-04   p_cons 8.110280e-01   p_joint 8.134146e-04

Joint ci ratio: 1.510435e-01	ci left: 7.495951e-04	ci right 8.732087e-04	k: 672	n:830000
Cons ci ratio: 2.076897e-03	ci left: 8.101935e-01	ci right 8.118791e-01	k: 673161	n:830000
KS ci ratio: 1.510435e-01	ci left: 7.495951e-04	ci right 8.732087e-04	k: 672	n:830000
ILVBL   830000 perm   473 sec   (1756 perm/sec)   p_kst 8.096386e-04   p_cons 8.110373e-01   p_joint 8.096386e-04

Joint ci ratio: 1.504858e-01	ci left: 7.463991e-04	ci right 8.689903e-04	k: 677	n:840000
Cons ci ratio: 2.064308e-03	ci left: 8.102267e-01	ci right 8.119021e-01	k: 681295	n:840000
KS ci ratio: 1.504858e-01	ci left: 7.463991e-04	ci right 8.689903e-04	k: 677	n:840000
ILVBL   840000 perm   482 sec   (1743 perm/sec)   p_kst 8.059524e-04   p_cons 8.110655e-01   p_joint 8.059524e-04

Joint ci ratio: 1.499343e-01	ci left: 7.432791e-04	ci right 8.648702e-04	k: 682	n:850000
Cons ci ratio: 2.052315e-03	ci left: 8.102038e-01	ci right 8.118694e-01	k: 689382	n:850000
KS ci ratio: 1.499343e-01	ci left: 7.432791e-04	ci right 8.648702e-04	k: 682	n:850000
ILVBL   850000 perm   492 sec   (1729 perm/sec)   p_kst 8.023529e-04   p_cons 8.110376e-01   p_joint 8.023529e-04

Joint ci ratio: 1.492802e-01	ci left: 7.413518e-04	ci right 8.620514e-04	k: 688	n:860000
Cons ci ratio: 2.040421e-03	ci left: 8.101977e-01	ci right 8.118537e-01	k: 697483	n:860000
KS ci ratio: 1.492802e-01	ci left: 7.413518e-04	ci right 8.620514e-04	k: 688	n:860000
ILVBL   860000 perm   501 sec   (1715 perm/sec)   p_kst 8.000000e-04   p_cons 8.110267e-01   p_joint 8.000000e-04

Joint ci ratio: 1.485277e-01	ci left: 7.405767e-04	ci right 8.604883e-04	k: 695	n:870000
Cons ci ratio: 2.028974e-03	ci left: 8.101550e-01	ci right 8.118016e-01	k: 705552	n:870000
KS ci ratio: 1.485277e-01	ci left: 7.405767e-04	ci right 8.604883e-04	k: 695	n:870000
ILVBL   870000 perm   511 sec   (1702 perm/sec)   p_kst 7.988506e-04   p_cons 8.109793e-01   p_joint 7.988506e-04

Joint ci ratio: 1.473675e-01	ci left: 7.441985e-04	ci right 8.636723e-04	k: 706	n:880000
Cons ci ratio: 2.017449e-03	ci left: 8.101542e-01	ci right 8.117914e-01	k: 713657	n:880000
KS ci ratio: 1.473675e-01	ci left: 7.441985e-04	ci right 8.636723e-04	k: 706	n:880000
ILVBL   880000 perm   521 sec   (1689 perm/sec)   p_kst 8.022727e-04   p_cons 8.109739e-01   p_joint 8.022727e-04

Joint ci ratio: 1.461322e-01	ci left: 7.488249e-04	ci right 8.679459e-04	k: 718	n:890000
Cons ci ratio: 2.005816e-03	ci left: 8.101997e-01	ci right 8.118275e-01	k: 721803	n:890000
KS ci ratio: 1.461322e-01	ci left: 7.488249e-04	ci right 8.679459e-04	k: 718	n:890000
ILVBL   890000 perm   531 sec   (1676 perm/sec)   p_kst 8.067416e-04   p_cons 8.110146e-01   p_joint 8.067416e-04

Joint ci ratio: 1.455264e-01	ci left: 7.469280e-04	ci right 8.652118e-04	k: 724	n:900000
Cons ci ratio: 1.994845e-03	ci left: 8.101729e-01	ci right 8.117918e-01	k: 729885	n:900000
KS ci ratio: 1.455264e-01	ci left: 7.469280e-04	ci right 8.652118e-04	k: 724	n:900000
ILVBL   900000 perm   541 sec   (1664 perm/sec)   p_kst 8.044444e-04   p_cons 8.109833e-01   p_joint 8.044444e-04

Joint ci ratio: 1.444346e-01	ci left: 7.503695e-04	ci right 8.682300e-04	k: 735	n:910000
Cons ci ratio: 1.983789e-03	ci left: 8.101875e-01	ci right 8.117974e-01	k: 738004	n:910000
KS ci ratio: 1.444346e-01	ci left: 7.503695e-04	ci right 8.682300e-04	k: 735	n:910000
ILVBL   910000 perm   551 sec   (1652 perm/sec)   p_kst 8.076923e-04   p_cons 8.109934e-01   p_joint 8.076923e-04

Joint ci ratio: 1.436560e-01	ci left: 7.505956e-04	ci right 8.678015e-04	k: 743	n:920000
Cons ci ratio: 1.973096e-03	ci left: 8.101734e-01	ci right 8.117746e-01	k: 746097	n:920000
KS ci ratio: 1.436560e-01	ci left: 7.505956e-04	ci right 8.678015e-04	k: 743	n:920000
ILVBL   920000 perm   561 sec   (1639 perm/sec)   p_kst 8.076087e-04   p_cons 8.109750e-01   p_joint 8.076087e-04

Joint ci ratio: 1.423227e-01	ci left: 7.570401e-04	ci right 8.740621e-04	k: 757	n:930000
Cons ci ratio: 1.962534e-03	ci left: 8.101662e-01	ci right 8.117588e-01	k: 754196	n:930000
KS ci ratio: 1.423227e-01	ci left: 7.570401e-04	ci right 8.740621e-04	k: 757	n:930000
ILVBL   930000 perm   572 sec   (1626 perm/sec)   p_kst 8.139785e-04   p_cons 8.109634e-01   p_joint 8.139785e-04

Joint ci ratio: 1.416701e-01	ci left: 7.561687e-04	ci right 8.724748e-04	k: 764	n:940000
Cons ci ratio: 1.952335e-03	ci left: 8.101282e-01	ci right 8.117124e-01	k: 762266	n:940000
KS ci ratio: 1.416701e-01	ci left: 7.561687e-04	ci right 8.724748e-04	k: 764	n:940000
ILVBL   940000 perm   582 sec   (1615 perm/sec)   p_kst 8.127660e-04   p_cons 8.109213e-01   p_joint 8.127660e-04

Joint ci ratio: 1.406622e-01	ci left: 7.593791e-04	ci right 8.752783e-04	k: 775	n:950000
Cons ci ratio: 1.942061e-03	ci left: 8.101280e-01	ci right 8.117038e-01	k: 770371	n:950000
KS ci ratio: 1.406622e-01	ci left: 7.593791e-04	ci right 8.752783e-04	k: 775	n:950000
ILVBL   950000 perm   593 sec   (1603 perm/sec)   p_kst 8.157895e-04   p_cons 8.109168e-01   p_joint 8.157895e-04

Joint ci ratio: 1.400322e-01	ci left: 7.585045e-04	ci right 8.737084e-04	k: 782	n:960000
Cons ci ratio: 1.931973e-03	ci left: 8.101236e-01	ci right 8.116912e-01	k: 778472	n:960000
KS ci ratio: 1.400322e-01	ci left: 7.585045e-04	ci right 8.737084e-04	k: 782	n:960000
ILVBL   960000 perm   603 sec   (1592 perm/sec)   p_kst 8.145833e-04   p_cons 8.109083e-01   p_joint 8.145833e-04

Joint ci ratio: 1.393222e-01	ci left: 7.586441e-04	ci right 8.732366e-04	k: 790	n:970000
Cons ci ratio: 1.922099e-03	ci left: 8.101100e-01	ci right 8.116696e-01	k: 786564	n:970000
KS ci ratio: 1.393222e-01	ci left: 7.586441e-04	ci right 8.732366e-04	k: 790	n:970000
ILVBL   970000 perm   614 sec   (1581 perm/sec)   p_kst 8.144330e-04   p_cons 8.108907e-01   p_joint 8.144330e-04

Joint ci ratio: 1.383633e-01	ci left: 7.617375e-04	ci right 8.759400e-04	k: 801	n:980000
Cons ci ratio: 1.912680e-03	ci left: 8.100477e-01	ci right 8.115995e-01	k: 794608	n:980000
KS ci ratio: 1.383633e-01	ci left: 7.617375e-04	ci right 8.759400e-04	k: 801	n:980000
ILVBL   980000 perm   624 sec   (1569 perm/sec)   p_kst 8.173469e-04   p_cons 8.108245e-01   p_joint 8.173469e-04

Joint ci ratio: 1.378488e-01	ci left: 7.598943e-04	ci right 8.733621e-04	k: 807	n:990000
Cons ci ratio: 1.902903e-03	ci left: 8.100665e-01	ci right 8.116104e-01	k: 802731	n:990000
KS ci ratio: 1.378488e-01	ci left: 7.598943e-04	ci right 8.733621e-04	k: 807	n:990000
ILVBL   990000 perm   635 sec   (1559 perm/sec)   p_kst 8.151515e-04   p_cons 8.108394e-01   p_joint 8.151515e-04

Joint ci ratio: 1.372556e-01	ci left: 7.590545e-04	ci right 8.718693e-04	k: 814	n:1000000
Cons ci ratio: 1.893373e-03	ci left: 8.100690e-01	ci right 8.116052e-01	k: 810838	n:1000000
KS ci ratio: 1.372556e-01	ci left: 7.590545e-04	ci right 8.718693e-04	k: 814	n:1000000
ILVBL   1000000 perm   646 sec   (1548 perm/sec)   p_kst 8.140000e-04   p_cons 8.108380e-01   p_joint 8.140000e-04

Joint ci ratio: 1.365869e-01	ci left: 7.591885e-04	ci right 8.714288e-04	k: 822	n:1010000
Cons ci ratio: 1.883772e-03	ci left: 8.101062e-01	ci right 8.116346e-01	k: 818980	n:1010000
KS ci ratio: 1.365869e-01	ci left: 7.591885e-04	ci right 8.714288e-04	k: 822	n:1010000
ILVBL   1010000 perm   657 sec   (1537 perm/sec)   p_kst 8.138614e-04   p_cons 8.108713e-01   p_joint 8.138614e-04

Joint ci ratio: 1.360918e-01	ci left: 7.574272e-04	ci right 8.689684e-04	k: 828	n:1020000
Cons ci ratio: 1.874400e-03	ci left: 8.101289e-01	ci right 8.116498e-01	k: 827108	n:1020000
KS ci ratio: 1.360918e-01	ci left: 7.574272e-04	ci right 8.689684e-04	k: 828	n:1020000
ILVBL   1020000 perm   668 sec   (1527 perm/sec)   p_kst 8.117647e-04   p_cons 8.108902e-01   p_joint 8.117647e-04

Joint ci ratio: 1.353590e-01	ci left: 7.585147e-04	ci right 8.695661e-04	k: 837	n:1030000
Cons ci ratio: 1.865544e-03	ci left: 8.100889e-01	ci right 8.116025e-01	k: 835172	n:1030000
KS ci ratio: 1.353590e-01	ci left: 7.585147e-04	ci right 8.695661e-04	k: 837	n:1030000
ILVBL   1030000 perm   679 sec   (1517 perm/sec)   p_kst 8.126214e-04   p_cons 8.108466e-01   p_joint 8.126214e-04

Joint ci ratio: 1.348771e-01	ci left: 7.567955e-04	ci right 8.671691e-04	k: 843	n:1040000
Cons ci ratio: 1.856585e-03	ci left: 8.100873e-01	ci right 8.115936e-01	k: 843275	n:1040000
KS ci ratio: 1.348771e-01	ci left: 7.567955e-04	ci right 8.671691e-04	k: 843	n:1040000
ILVBL   1040000 perm   690 sec   (1506 perm/sec)   p_kst 8.105769e-04   p_cons 8.108413e-01   p_joint 8.105769e-04

Joint ci ratio: 1.342424e-01	ci left: 7.569505e-04	ci right 8.667857e-04	k: 851	n:1050000
Cons ci ratio: 1.847840e-03	ci left: 8.100715e-01	ci right 8.115706e-01	k: 851363	n:1050000
KS ci ratio: 1.342424e-01	ci left: 7.569505e-04	ci right 8.667857e-04	k: 851	n:1050000
ILVBL   1050000 perm   702 sec   (1496 perm/sec)   p_kst 8.104762e-04   p_cons 8.108219e-01   p_joint 8.104762e-04

Joint ci ratio: 1.336166e-01	ci left: 7.571037e-04	ci right 8.664084e-04	k: 859	n:1060000
Cons ci ratio: 1.839568e-03	ci left: 8.099973e-01	ci right 8.114897e-01	k: 859389	n:1060000
KS ci ratio: 1.336166e-01	ci left: 7.571037e-04	ci right 8.664084e-04	k: 859	n:1060000
ILVBL   1060000 perm   713 sec   (1486 perm/sec)   p_kst 8.103774e-04   p_cons 8.107443e-01   p_joint 8.103774e-04

Joint ci ratio: 1.329228e-01	ci left: 7.581588e-04	ci right 8.670026e-04	k: 868	n:1070000
Cons ci ratio: 1.831015e-03	ci left: 8.099901e-01	ci right 8.114755e-01	k: 867485	n:1070000
KS ci ratio: 1.329228e-01	ci left: 7.581588e-04	ci right 8.670026e-04	k: 868	n:1070000
ILVBL   1070000 perm   725 sec   (1476 perm/sec)   p_kst 8.112150e-04   p_cons 8.107336e-01   p_joint 8.112150e-04

Joint ci ratio: 1.324664e-01	ci left: 7.565099e-04	ci right 8.647147e-04	k: 874	n:1080000
Cons ci ratio: 1.822394e-03	ci left: 8.100146e-01	ci right 8.114930e-01	k: 875615	n:1080000
KS ci ratio: 1.324664e-01	ci left: 7.565099e-04	ci right 8.647147e-04	k: 874	n:1080000
ILVBL   1080000 perm   736 sec   (1467 perm/sec)   p_kst 8.092593e-04   p_cons 8.107546e-01   p_joint 8.092593e-04

Joint ci ratio: 1.318650e-01	ci left: 7.566662e-04	ci right 8.643635e-04	k: 882	n:1090000
Cons ci ratio: 1.814127e-03	ci left: 8.099991e-01	ci right 8.114708e-01	k: 883702	n:1090000
KS ci ratio: 1.318650e-01	ci left: 7.566662e-04	ci right 8.643635e-04	k: 882	n:1090000
ILVBL   1090000 perm   748 sec   (1457 perm/sec)   p_kst 8.091743e-04   p_cons 8.107358e-01   p_joint 8.091743e-04

Joint ci ratio: 1.311980e-01	ci left: 7.577001e-04	ci right 8.649565e-04	k: 891	n:1100000
Cons ci ratio: 1.805907e-03	ci left: 8.099949e-01	ci right 8.114599e-01	k: 891801	n:1100000
KS ci ratio: 1.311980e-01	ci left: 7.577001e-04	ci right 8.649565e-04	k: 891	n:1100000
ILVBL   1100000 perm   760 sec   (1447 perm/sec)   p_kst 8.100000e-04   p_cons 8.107282e-01   p_joint 8.100000e-04

Joint ci ratio: 1.305411e-01	ci left: 7.587166e-04	ci right 8.655375e-04	k: 900	n:1110000
Cons ci ratio: 1.797533e-03	ci left: 8.100358e-01	ci right 8.114941e-01	k: 899950	n:1110000
KS ci ratio: 1.305411e-01	ci left: 7.587166e-04	ci right 8.655375e-04	k: 900	n:1110000
ILVBL   1110000 perm   772 sec   (1438 perm/sec)   p_kst 8.108108e-04   p_cons 8.107658e-01   p_joint 8.108108e-04

Joint ci ratio: 1.298225e-01	ci left: 7.605802e-04	ci right 8.670286e-04	k: 910	n:1120000
Cons ci ratio: 1.789317e-03	ci left: 8.100689e-01	ci right 8.115205e-01	k: 908091	n:1120000
KS ci ratio: 1.298225e-01	ci left: 7.605802e-04	ci right 8.670286e-04	k: 910	n:1120000
ILVBL   1120000 perm   784 sec   (1429 perm/sec)   p_kst 8.125000e-04   p_cons 8.107955e-01   p_joint 8.125000e-04

Joint ci ratio: 1.293267e-01	ci left: 7.598433e-04	ci right 8.657512e-04	k: 917	n:1130000
Cons ci ratio: 1.781705e-03	ci left: 8.100163e-01	ci right 8.114617e-01	k: 916136	n:1130000
KS ci ratio: 1.293267e-01	ci left: 7.598433e-04	ci right 8.657512e-04	k: 917	n:1130000
ILVBL   1130000 perm   796 sec   (1420 perm/sec)   p_kst 8.115044e-04   p_cons 8.107398e-01   p_joint 8.115044e-04

Joint ci ratio: 1.287668e-01	ci left: 7.599690e-04	ci right 8.654008e-04	k: 925	n:1140000
Cons ci ratio: 1.774150e-03	ci left: 8.099717e-01	ci right 8.114109e-01	k: 924189	n:1140000
KS ci ratio: 1.287668e-01	ci left: 7.599690e-04	ci right 8.654008e-04	k: 925	n:1140000
ILVBL   1140000 perm   808 sec   (1411 perm/sec)   p_kst 8.114035e-04   p_cons 8.106921e-01   p_joint 8.114035e-04

Joint ci ratio: 1.282142e-01	ci left: 7.600935e-04	ci right 8.650556e-04	k: 933	n:1150000
Cons ci ratio: 1.766259e-03	ci left: 8.100028e-01	ci right 8.114356e-01	k: 932328	n:1150000
KS ci ratio: 1.282142e-01	ci left: 7.600935e-04	ci right 8.650556e-04	k: 933	n:1150000
ILVBL   1150000 perm   820 sec   (1402 perm/sec)   p_kst 8.113043e-04   p_cons 8.107200e-01   p_joint 8.113043e-04

Joint ci ratio: 1.273982e-01	ci left: 7.635551e-04	ci right 8.682735e-04	k: 945	n:1160000
Cons ci ratio: 1.758501e-03	ci left: 8.100282e-01	ci right 8.114547e-01	k: 940461	n:1160000
KS ci ratio: 1.273982e-01	ci left: 7.635551e-04	ci right 8.682735e-04	k: 945	n:1160000
ILVBL   1160000 perm   832 sec   (1394 perm/sec)   p_kst 8.146552e-04   p_cons 8.107422e-01   p_joint 8.146552e-04

Joint ci ratio: 1.270630e-01	ci left: 7.611665e-04	ci right 8.652619e-04	k: 950	n:1170000
Cons ci ratio: 1.751138e-03	ci left: 8.100018e-01	ci right 8.114223e-01	k: 948534	n:1170000
KS ci ratio: 1.270630e-01	ci left: 7.611665e-04	ci right 8.652619e-04	k: 950	n:1170000
ILVBL   1170000 perm   844 sec   (1386 perm/sec)   p_kst 8.119658e-04   p_cons 8.107128e-01   p_joint 8.119658e-04

Joint ci ratio: 1.263343e-01	ci left: 7.637425e-04	ci right 8.675464e-04	k: 961	n:1180000
Cons ci ratio: 1.743563e-03	ci left: 8.100293e-01	ci right 8.114437e-01	k: 956670	n:1180000
KS ci ratio: 1.263343e-01	ci left: 7.637425e-04	ci right 8.675464e-04	k: 961	n:1180000
ILVBL   1180000 perm   857 sec   (1377 perm/sec)   p_kst 8.144068e-04   p_cons 8.107373e-01   p_joint 8.144068e-04

Joint ci ratio: 1.258772e-01	ci left: 7.630213e-04	ci right 8.663240e-04	k: 968	n:1190000
Cons ci ratio: 1.736295e-03	ci left: 8.100194e-01	ci right 8.114278e-01	k: 964762	n:1190000
KS ci ratio: 1.258772e-01	ci left: 7.630213e-04	ci right 8.663240e-04	k: 968	n:1190000
ILVBL   1190000 perm   869 sec   (1369 perm/sec)   p_kst 8.134454e-04   p_cons 8.107244e-01   p_joint 8.134454e-04

Joint ci ratio: 1.254894e-01	ci left: 7.615056e-04	ci right 8.642618e-04	k: 974	n:1200000
Cons ci ratio: 1.729070e-03	ci left: 8.100180e-01	ci right 8.114205e-01	k: 972864	n:1200000
KS ci ratio: 1.254894e-01	ci left: 7.615056e-04	ci right 8.642618e-04	k: 974	n:1200000
ILVBL   1200000 perm   882 sec   (1361 perm/sec)   p_kst 8.116667e-04   p_cons 8.107200e-01   p_joint 8.116667e-04

Joint ci ratio: 1.247873e-01	ci left: 7.640185e-04	ci right 8.664944e-04	k: 985	n:1210000
Cons ci ratio: 1.722180e-03	ci left: 8.099727e-01	ci right 8.113696e-01	k: 980913	n:1210000
KS ci ratio: 1.247873e-01	ci left: 7.640185e-04	ci right 8.664944e-04	k: 985	n:1210000
ILVBL   1210000 perm   894 sec   (1353 perm/sec)   p_kst 8.140496e-04   p_cons 8.106719e-01   p_joint 8.140496e-04

Joint ci ratio: 1.242841e-01	ci left: 7.641092e-04	ci right 8.661535e-04	k: 993	n:1220000
Cons ci ratio: 1.714877e-03	ci left: 8.100168e-01	ci right 8.114079e-01	k: 989070	n:1220000
KS ci ratio: 1.242841e-01	ci left: 7.641092e-04	ci right 8.661535e-04	k: 993	n:1220000
ILVBL   1220000 perm   907 sec   (1345 perm/sec)   p_kst 8.139344e-04   p_cons 8.107131e-01   p_joint 8.139344e-04

Joint ci ratio: 1.238489e-01	ci left: 7.634113e-04	ci right 8.649792e-04	k: 1000	n:1230000
Cons ci ratio: 1.708060e-03	ci left: 8.099895e-01	ci right 8.113749e-01	k: 997140	n:1230000
KS ci ratio: 1.238489e-01	ci left: 7.634113e-04	ci right 8.649792e-04	k: 1000	n:1230000
ILVBL   1230000 perm   920 sec   (1337 perm/sec)   p_kst 8.130081e-04   p_cons 8.106829e-01   p_joint 8.130081e-04

Joint ci ratio: 1.231738e-01	ci left: 7.658517e-04	ci right 8.671484e-04	k: 1011	n:1240000
Cons ci ratio: 1.701381e-03	ci left: 8.099520e-01	ci right 8.113320e-01	k: 1005197	n:1240000
KS ci ratio: 1.231738e-01	ci left: 7.658517e-04	ci right 8.671484e-04	k: 1011	n:1240000
ILVBL   1240000 perm   933 sec   (1329 perm/sec)   p_kst 8.153226e-04   p_cons 8.106427e-01   p_joint 8.153226e-04

Joint ci ratio: 1.225696e-01	ci left: 7.674791e-04	ci right 8.684570e-04	k: 1021	n:1250000
Cons ci ratio: 1.694917e-03	ci left: 8.098904e-01	ci right 8.112650e-01	k: 1013223	n:1250000
KS ci ratio: 1.225696e-01	ci left: 7.674791e-04	ci right 8.684570e-04	k: 1021	n:1250000
ILVBL   1250000 perm   946 sec   (1321 perm/sec)   p_kst 8.168000e-04   p_cons 8.105784e-01   p_joint 8.168000e-04

Joint ci ratio: 1.220927e-01	ci left: 7.675429e-04	ci right 8.681079e-04	k: 1029	n:1260000
Cons ci ratio: 1.687815e-03	ci left: 8.099592e-01	ci right 8.113282e-01	k: 1021412	n:1260000
KS ci ratio: 1.220927e-01	ci left: 7.675429e-04	ci right 8.681079e-04	k: 1029	n:1260000
ILVBL   1260000 perm   960 sec   (1313 perm/sec)   p_kst 8.166667e-04   p_cons 8.106444e-01   p_joint 8.166667e-04

Joint ci ratio: 1.217387e-01	ci left: 7.660795e-04	ci right 8.661408e-04	k: 1035	n:1270000
Cons ci ratio: 1.680874e-03	ci left: 8.100136e-01	ci right 8.113771e-01	k: 1029584	n:1270000
KS ci ratio: 1.217387e-01	ci left: 7.660795e-04	ci right 8.661408e-04	k: 1035	n:1270000
ILVBL   1270000 perm   973 sec   (1306 perm/sec)   p_kst 8.149606e-04   p_cons 8.106961e-01   p_joint 8.149606e-04

Joint ci ratio: 1.210396e-01	ci left: 7.691850e-04	ci right 8.690335e-04	k: 1047	n:1280000
Cons ci ratio: 1.674295e-03	ci left: 8.100163e-01	ci right 8.113744e-01	k: 1037691	n:1280000
KS ci ratio: 1.210396e-01	ci left: 7.691850e-04	ci right 8.690335e-04	k: 1047	n:1280000
ILVBL   1280000 perm   986 sec   (1298 perm/sec)   p_kst 8.179688e-04   p_cons 8.106961e-01   p_joint 8.179688e-04

Joint ci ratio: 1.205231e-01	ci left: 7.699883e-04	ci right 8.694843e-04	k: 1056	n:1290000
Cons ci ratio: 1.667826e-03	ci left: 8.100128e-01	ci right 8.113656e-01	k: 1045790	n:1290000
KS ci ratio: 1.205231e-01	ci left: 7.699883e-04	ci right 8.694843e-04	k: 1056	n:1290000
ILVBL   1290000 perm   1000 sec   (1290 perm/sec)   p_kst 8.186047e-04   p_cons 8.106899e-01   p_joint 8.186047e-04

Joint ci ratio: 1.202959e-01	ci left: 7.670495e-04	ci right 8.659656e-04	k: 1060	n:1300000
Cons ci ratio: 1.661470e-03	ci left: 8.100024e-01	ci right 8.113501e-01	k: 1053880	n:1300000
KS ci ratio: 1.202959e-01	ci left: 7.670495e-04	ci right 8.659656e-04	k: 1060	n:1300000
ILVBL   1300000 perm   1013 sec   (1283 perm/sec)   p_kst 8.153846e-04   p_cons 8.106769e-01   p_joint 8.153846e-04

Joint ci ratio: 1.197329e-01	ci left: 7.685986e-04	ci right 8.672177e-04	k: 1070	n:1310000
Cons ci ratio: 1.655000e-03	ci left: 8.100266e-01	ci right 8.113690e-01	k: 1062015	n:1310000
KS ci ratio: 1.197329e-01	ci left: 7.685986e-04	ci right 8.672177e-04	k: 1070	n:1310000
ILVBL   1310000 perm   1027 sec   (1275 perm/sec)   p_kst 8.167939e-04   p_cons 8.106985e-01   p_joint 8.167939e-04

Joint ci ratio: 1.192329e-01	ci left: 7.693903e-04	ci right 8.676697e-04	k: 1079	n:1320000
Cons ci ratio: 1.648800e-03	ci left: 8.100140e-01	ci right 8.113513e-01	k: 1070102	n:1320000
KS ci ratio: 1.192329e-01	ci left: 7.693903e-04	ci right 8.676697e-04	k: 1079	n:1320000
ILVBL   1320000 perm   1041 sec   (1268 perm/sec)   p_kst 8.174242e-04   p_cons 8.106833e-01   p_joint 8.174242e-04

Joint ci ratio: 1.189580e-01	ci left: 7.672528e-04	ci right 8.650173e-04	k: 1084	n:1330000
Cons ci ratio: 1.642726e-03	ci left: 8.099910e-01	ci right 8.113234e-01	k: 1078175	n:1330000
KS ci ratio: 1.189580e-01	ci left: 7.672528e-04	ci right 8.650173e-04	k: 1084	n:1330000
ILVBL   1330000 perm   1055 sec   (1261 perm/sec)   p_kst 8.150376e-04   p_cons 8.106579e-01   p_joint 8.150376e-04

Joint ci ratio: 1.184135e-01	ci left: 7.687682e-04	ci right 8.662460e-04	k: 1094	n:1340000
Cons ci ratio: 1.636540e-03	ci left: 8.100020e-01	ci right 8.113295e-01	k: 1086293	n:1340000
KS ci ratio: 1.184135e-01	ci left: 7.687682e-04	ci right 8.662460e-04	k: 1094	n:1340000
ILVBL   1340000 perm   1069 sec   (1254 perm/sec)   p_kst 8.164179e-04   p_cons 8.106664e-01   p_joint 8.164179e-04

Joint ci ratio: 1.180905e-01	ci left: 7.673865e-04	ci right 8.644053e-04	k: 1100	n:1350000
Cons ci ratio: 1.630517e-03	ci left: 8.099951e-01	ci right 8.113176e-01	k: 1094387	n:1350000
KS ci ratio: 1.180905e-01	ci left: 7.673865e-04	ci right 8.644053e-04	k: 1100	n:1350000
ILVBL   1350000 perm   1083 sec   (1247 perm/sec)   p_kst 8.148148e-04   p_cons 8.106570e-01   p_joint 8.148148e-04

Joint ci ratio: 1.177170e-01	ci left: 7.667392e-04	ci right 8.633482e-04	k: 1107	n:1360000
Cons ci ratio: 1.624342e-03	ci left: 8.100295e-01	ci right 8.113471e-01	k: 1102537	n:1360000
KS ci ratio: 1.177170e-01	ci left: 7.667392e-04	ci right 8.633482e-04	k: 1107	n:1360000
ILVBL   1360000 perm   1097 sec   (1240 perm/sec)   p_kst 8.139706e-04   p_cons 8.106890e-01   p_joint 8.139706e-04

Joint ci ratio: 1.176111e-01	ci left: 7.625594e-04	ci right 8.585493e-04	k: 1109	n:1370000
Cons ci ratio: 1.618311e-03	ci left: 8.100496e-01	ci right 8.113623e-01	k: 1110668	n:1370000
KS ci ratio: 1.176111e-01	ci left: 7.625594e-04	ci right 8.585493e-04	k: 1109	n:1370000
ILVBL   1370000 perm   1111 sec   (1234 perm/sec)   p_kst 8.094891e-04   p_cons 8.107066e-01   p_joint 8.094891e-04

Joint ci ratio: 1.169803e-01	ci left: 7.654742e-04	ci right 8.612785e-04	k: 1121	n:1380000
Cons ci ratio: 1.612227e-03	ci left: 8.100918e-01	ci right 8.113996e-01	k: 1118830	n:1380000
KS ci ratio: 1.169803e-01	ci left: 7.654742e-04	ci right 8.612785e-04	k: 1121	n:1380000
ILVBL   1380000 perm   1125 sec   (1227 perm/sec)   p_kst 8.123188e-04   p_cons 8.107464e-01   p_joint 8.123188e-04

Joint ci ratio: 1.169285e-01	ci left: 7.606655e-04	ci right 8.558228e-04	k: 1122	n:1390000
Cons ci ratio: 1.606370e-03	ci left: 8.101032e-01	ci right 8.114063e-01	k: 1126950	n:1390000
KS ci ratio: 1.169285e-01	ci left: 7.606655e-04	ci right 8.558228e-04	k: 1122	n:1390000
ILVBL   1390000 perm   1139 sec   (1220 perm/sec)   p_kst 8.071942e-04   p_cons 8.107554e-01   p_joint 8.071942e-04

Joint ci ratio: 1.164628e-01	ci left: 7.614731e-04	ci right 8.563259e-04	k: 1131	n:1400000
Cons ci ratio: 1.600610e-03	ci left: 8.101080e-01	ci right 8.114064e-01	k: 1135061	n:1400000
KS ci ratio: 1.164628e-01	ci left: 7.614731e-04	ci right 8.563259e-04	k: 1131	n:1400000
ILVBL   1400000 perm   1154 sec   (1213 perm/sec)   p_kst 8.078571e-04   p_cons 8.107579e-01   p_joint 8.078571e-04

Joint ci ratio: 1.160025e-01	ci left: 7.622700e-04	ci right 8.568211e-04	k: 1140	n:1410000
Cons ci ratio: 1.594996e-03	ci left: 8.100964e-01	ci right 8.113902e-01	k: 1143149	n:1410000
KS ci ratio: 1.160025e-01	ci left: 7.622700e-04	ci right 8.568211e-04	k: 1140	n:1410000
ILVBL   1410000 perm   1169 sec   (1207 perm/sec)   p_kst 8.085106e-04   p_cons 8.107440e-01   p_joint 8.085106e-04

Joint ci ratio: 1.154974e-01	ci left: 7.637403e-04	ci right 8.580332e-04	k: 1150	n:1420000
Cons ci ratio: 1.589281e-03	ci left: 8.101160e-01	ci right 8.114052e-01	k: 1151281	n:1420000
KS ci ratio: 1.154974e-01	ci left: 7.637403e-04	ci right 8.580332e-04	k: 1150	n:1420000
ILVBL   1420000 perm   1183 sec   (1200 perm/sec)   p_kst 8.098592e-04   p_cons 8.107613e-01   p_joint 8.098592e-04

Joint ci ratio: 1.150484e-01	ci left: 7.645117e-04	ci right 8.585081e-04	k: 1159	n:1430000
Cons ci ratio: 1.583871e-03	ci left: 8.100878e-01	ci right 8.113725e-01	k: 1159345	n:1430000
KS ci ratio: 1.150484e-01	ci left: 7.645117e-04	ci right 8.585081e-04	k: 1159	n:1430000
ILVBL   1430000 perm   1198 sec   (1194 perm/sec)   p_kst 8.104895e-04   p_cons 8.107308e-01   p_joint 8.104895e-04

Joint ci ratio: 1.147029e-01	ci left: 7.639240e-04	ci right 8.575469e-04	k: 1166	n:1440000
Cons ci ratio: 1.578356e-03	ci left: 8.100912e-01	ci right 8.113715e-01	k: 1167454	n:1440000
KS ci ratio: 1.147029e-01	ci left: 7.639240e-04	ci right 8.575469e-04	k: 1166	n:1440000
ILVBL   1440000 perm   1213 sec   (1187 perm/sec)   p_kst 8.097222e-04   p_cons 8.107319e-01   p_joint 8.097222e-04

Joint ci ratio: 1.143118e-01	ci left: 7.640148e-04	ci right 8.573080e-04	k: 1174	n:1450000
Cons ci ratio: 1.572976e-03	ci left: 8.100794e-01	ci right 8.113553e-01	k: 1175541	n:1450000
KS ci ratio: 1.143118e-01	ci left: 7.640148e-04	ci right 8.573080e-04	k: 1174	n:1450000
ILVBL   1450000 perm   1228 sec   (1181 perm/sec)   p_kst 8.096552e-04   p_cons 8.107179e-01   p_joint 8.096552e-04

Joint ci ratio: 1.141663e-01	ci left: 7.607778e-04	ci right 8.535496e-04	k: 1177	n:1460000
Cons ci ratio: 1.567640e-03	ci left: 8.100698e-01	ci right 8.113413e-01	k: 1183631	n:1460000
KS ci ratio: 1.141663e-01	ci left: 7.607778e-04	ci right 8.535496e-04	k: 1177	n:1460000
ILVBL   1460000 perm   1243 sec   (1174 perm/sec)   p_kst 8.061644e-04   p_cons 8.107062e-01   p_joint 8.061644e-04

Joint ci ratio: 1.137326e-01	ci left: 7.615504e-04	ci right 8.540400e-04	k: 1186	n:1470000
Cons ci ratio: 1.562095e-03	ci left: 8.101121e-01	ci right 8.113792e-01	k: 1191797	n:1470000
KS ci ratio: 1.137326e-01	ci left: 7.615504e-04	ci right 8.540400e-04	k: 1186	n:1470000
ILVBL   1470000 perm   1259 sec   (1168 perm/sec)   p_kst 8.068027e-04   p_cons 8.107463e-01   p_joint 8.068027e-04

Joint ci ratio: 1.133988e-01	ci left: 7.610002e-04	ci right 8.531335e-04	k: 1193	n:1480000
Cons ci ratio: 1.556498e-03	ci left: 8.101755e-01	ci right 8.114382e-01	k: 1199995	n:1480000
KS ci ratio: 1.133988e-01	ci left: 7.610002e-04	ci right 8.531335e-04	k: 1193	n:1480000
ILVBL   1480000 perm   1274 sec   (1161 perm/sec)   p_kst 8.060811e-04   p_cons 8.108074e-01   p_joint 8.060811e-04

Joint ci ratio: 1.130679e-01	ci left: 7.604577e-04	ci right 8.522388e-04	k: 1200	n:1490000
Cons ci ratio: 1.551090e-03	ci left: 8.102125e-01	ci right 8.114708e-01	k: 1208155	n:1490000
KS ci ratio: 1.130679e-01	ci left: 7.604577e-04	ci right 8.522388e-04	k: 1200	n:1490000
ILVBL   1490000 perm   1289 sec   (1156 perm/sec)   p_kst 8.053691e-04   p_cons 8.108423e-01   p_joint 8.053691e-04

Joint ci ratio: 1.126000e-01	ci left: 7.618665e-04	ci right 8.534119e-04	k: 1210	n:1500000
Cons ci ratio: 1.545889e-03	ci left: 8.102190e-01	ci right 8.114731e-01	k: 1216270	n:1500000
KS ci ratio: 1.126000e-01	ci left: 7.618665e-04	ci right 8.534119e-04	k: 1210	n:1500000
ILVBL   1500000 perm   1305 sec   (1149 perm/sec)   p_kst 8.066667e-04   p_cons 8.108467e-01   p_joint 8.066667e-04

Joint ci ratio: 1.121379e-01	ci left: 7.632575e-04	ci right 8.545687e-04	k: 1220	n:1510000
Cons ci ratio: 1.540926e-03	ci left: 8.101883e-01	ci right 8.114383e-01	k: 1224329	n:1510000
KS ci ratio: 1.121379e-01	ci left: 7.632575e-04	ci right 8.545687e-04	k: 1220	n:1510000
ILVBL   1510000 perm   1321 sec   (1143 perm/sec)   p_kst 8.079470e-04   p_cons 8.108139e-01   p_joint 8.079470e-04

Joint ci ratio: 1.117723e-01	ci left: 7.633518e-04	ci right 8.543570e-04	k: 1228	n:1520000
Cons ci ratio: 1.535839e-03	ci left: 8.101922e-01	ci right 8.114382e-01	k: 1232440	n:1520000
KS ci ratio: 1.117723e-01	ci left: 7.633518e-04	ci right 8.543570e-04	k: 1228	n:1520000
ILVBL   1520000 perm   1336 sec   (1138 perm/sec)   p_kst 8.078947e-04   p_cons 8.108158e-01   p_joint 8.078947e-04

Joint ci ratio: 1.113653e-01	ci left: 7.640808e-04	ci right 8.548194e-04	k: 1237	n:1530000
Cons ci ratio: 1.530845e-03	ci left: 8.101876e-01	ci right 8.114295e-01	k: 1240538	n:1530000
KS ci ratio: 1.113653e-01	ci left: 7.640808e-04	ci right 8.548194e-04	k: 1237	n:1530000
ILVBL   1530000 perm   1351 sec   (1132 perm/sec)   p_kst 8.084967e-04   p_cons 8.108092e-01   p_joint 8.084967e-04

Joint ci ratio: 1.110965e-01	ci left: 7.629069e-04	ci right 8.532731e-04	k: 1243	n:1540000
Cons ci ratio: 1.526019e-03	ci left: 8.101590e-01	ci right 8.113969e-01	k: 1248599	n:1540000
KS ci ratio: 1.110965e-01	ci left: 7.629069e-04	ci right 8.532731e-04	k: 1243	n:1540000
ILVBL   1540000 perm   1367 sec   (1127 perm/sec)   p_kst 8.071429e-04   p_cons 8.107786e-01   p_joint 8.071429e-04

Joint ci ratio: 1.107853e-01	ci left: 7.623758e-04	ci right 8.524095e-04	k: 1250	n:1550000
Cons ci ratio: 1.521036e-03	ci left: 8.101715e-01	ci right 8.114054e-01	k: 1256723	n:1550000
KS ci ratio: 1.107853e-01	ci left: 7.623758e-04	ci right 8.524095e-04	k: 1250	n:1550000
ILVBL   1550000 perm   1383 sec   (1121 perm/sec)   p_kst 8.064516e-04   p_cons 8.107890e-01   p_joint 8.064516e-04

Joint ci ratio: 1.106528e-01	ci left: 7.593585e-04	ci right 8.489217e-04	k: 1253	n:1560000
Cons ci ratio: 1.516242e-03	ci left: 8.101556e-01	ci right 8.113855e-01	k: 1264803	n:1560000
KS ci ratio: 1.106528e-01	ci left: 7.593585e-04	ci right 8.489217e-04	k: 1253	n:1560000
ILVBL   1560000 perm   1399 sec   (1115 perm/sec)   p_kst 8.032051e-04   p_cons 8.107712e-01   p_joint 8.032051e-04

Joint ci ratio: 1.104330e-01	ci left: 7.576184e-04	ci right 8.467874e-04	k: 1258	n:1570000
Cons ci ratio: 1.511395e-03	ci left: 8.101597e-01	ci right 8.113857e-01	k: 1272914	n:1570000
KS ci ratio: 1.104330e-01	ci left: 7.576184e-04	ci right 8.467874e-04	k: 1258	n:1570000
ILVBL   1570000 perm   1415 sec   (1110 perm/sec)   p_kst 8.012739e-04   p_cons 8.107732e-01   p_joint 8.012739e-04

Joint ci ratio: 1.100838e-01	ci left: 7.577471e-04	ci right 8.466308e-04	k: 1266	n:1580000
Cons ci ratio: 1.506517e-03	ci left: 8.101795e-01	ci right 8.114016e-01	k: 1281050	n:1580000
KS ci ratio: 1.100838e-01	ci left: 7.577471e-04	ci right 8.466308e-04	k: 1266	n:1580000
ILVBL   1580000 perm   1431 sec   (1104 perm/sec)   p_kst 8.012658e-04   p_cons 8.107911e-01   p_joint 8.012658e-04

Joint ci ratio: 1.096519e-01	ci left: 7.590979e-04	ci right 8.477681e-04	k: 1276	n:1590000
Cons ci ratio: 1.501793e-03	ci left: 8.101771e-01	ci right 8.113953e-01	k: 1289151	n:1590000
KS ci ratio: 1.096519e-01	ci left: 7.590979e-04	ci right 8.477681e-04	k: 1276	n:1590000
ILVBL   1590000 perm   1447 sec   (1099 perm/sec)   p_kst 8.025157e-04   p_cons 8.107868e-01   p_joint 8.025157e-04

Joint ci ratio: 1.092675e-01	ci left: 7.598245e-04	ci right 8.482485e-04	k: 1285	n:1600000
Cons ci ratio: 1.497046e-03	ci left: 8.101885e-01	ci right 8.114029e-01	k: 1297274	n:1600000
KS ci ratio: 1.092675e-01	ci left: 7.598245e-04	ci right 8.482485e-04	k: 1285	n:1600000
ILVBL   1600000 perm   1463 sec   (1093 perm/sec)   p_kst 8.031250e-04   p_cons 8.107962e-01   p_joint 8.031250e-04

Joint ci ratio: 1.088450e-01	ci left: 7.611469e-04	ci right 8.493604e-04	k: 1295	n:1610000
Cons ci ratio: 1.492462e-03	ci left: 8.101755e-01	ci right 8.113861e-01	k: 1305358	n:1610000
KS ci ratio: 1.088450e-01	ci left: 7.611469e-04	ci right 8.493604e-04	k: 1295	n:1610000
ILVBL   1610000 perm   1480 sec   (1088 perm/sec)   p_kst 8.043478e-04   p_cons 8.107814e-01   p_joint 8.043478e-04

Joint ci ratio: 1.087194e-01	ci left: 7.582499e-04	ci right 8.460197e-04	k: 1298	n:1620000
Cons ci ratio: 1.487824e-03	ci left: 8.101824e-01	ci right 8.113893e-01	k: 1313474	n:1620000
KS ci ratio: 1.087194e-01	ci left: 7.582499e-04	ci right 8.460197e-04	k: 1298	n:1620000
ILVBL   1620000 perm   1496 sec   (1083 perm/sec)   p_kst 8.012346e-04   p_cons 8.107864e-01   p_joint 8.012346e-04

Joint ci ratio: 1.083862e-01	ci left: 7.583728e-04	ci right 8.458706e-04	k: 1306	n:1630000
Cons ci ratio: 1.483288e-03	ci left: 8.101770e-01	ci right 8.113802e-01	k: 1321570	n:1630000
KS ci ratio: 1.083862e-01	ci left: 7.583728e-04	ci right 8.458706e-04	k: 1306	n:1630000
ILVBL   1630000 perm   1513 sec   (1078 perm/sec)   p_kst 8.012270e-04   p_cons 8.107791e-01   p_joint 8.012270e-04

Joint ci ratio: 1.081383e-01	ci left: 7.573080e-04	ci right 8.444704e-04	k: 1312	n:1640000
Cons ci ratio: 1.478721e-03	ci left: 8.101869e-01	ci right 8.113864e-01	k: 1329691	n:1640000
KS ci ratio: 1.081383e-01	ci left: 7.573080e-04	ci right 8.444704e-04	k: 1312	n:1640000
ILVBL   1640000 perm   1529 sec   (1072 perm/sec)   p_kst 8.000000e-04   p_cons 8.107872e-01   p_joint 8.000000e-04

Joint ci ratio: 1.078104e-01	ci left: 7.574358e-04	ci right 8.443318e-04	k: 1320	n:1650000
Cons ci ratio: 1.474218e-03	ci left: 8.101918e-01	ci right 8.113877e-01	k: 1337804	n:1650000
KS ci ratio: 1.078104e-01	ci left: 7.574358e-04	ci right 8.443318e-04	k: 1320	n:1650000
ILVBL   1650000 perm   1546 sec   (1067 perm/sec)   p_kst 8.000000e-04   p_cons 8.107903e-01   p_joint 8.000000e-04

Joint ci ratio: 1.074854e-01	ci left: 7.575624e-04	ci right 8.441944e-04	k: 1328	n:1660000
Cons ci ratio: 1.469756e-03	ci left: 8.101967e-01	ci right 8.113890e-01	k: 1345917	n:1660000
KS ci ratio: 1.074854e-01	ci left: 7.575624e-04	ci right 8.441944e-04	k: 1328	n:1660000
ILVBL   1660000 perm   1563 sec   (1062 perm/sec)   p_kst 8.000000e-04   p_cons 8.107934e-01   p_joint 8.000000e-04

Joint ci ratio: 1.070832e-01	ci left: 7.588535e-04	ci right 8.452880e-04	k: 1338	n:1670000
Cons ci ratio: 1.465403e-03	ci left: 8.101871e-01	ci right 8.113758e-01	k: 1354006	n:1670000
KS ci ratio: 1.070832e-01	ci left: 7.588535e-04	ci right 8.452880e-04	k: 1338	n:1670000
ILVBL   1670000 perm   1580 sec   (1057 perm/sec)   p_kst 8.011976e-04   p_cons 8.107820e-01   p_joint 8.011976e-04

Joint ci ratio: 1.067648e-01	ci left: 7.589711e-04	ci right 8.451457e-04	k: 1346	n:1680000
Cons ci ratio: 1.461174e-03	ci left: 8.101598e-01	ci right 8.113451e-01	k: 1362065	n:1680000
KS ci ratio: 1.067648e-01	ci left: 7.589711e-04	ci right 8.451457e-04	k: 1346	n:1680000
ILVBL   1680000 perm   1598 sec   (1052 perm/sec)   p_kst 8.011905e-04   p_cons 8.107530e-01   p_joint 8.011905e-04

Joint ci ratio: 1.062922e-01	ci left: 7.613916e-04	ci right 8.474345e-04	k: 1358	n:1690000
Cons ci ratio: 1.456863e-03	ci left: 8.101577e-01	ci right 8.113394e-01	k: 1370166	n:1690000
KS ci ratio: 1.062922e-01	ci left: 7.613916e-04	ci right 8.474345e-04	k: 1358	n:1690000
ILVBL   1690000 perm   1615 sec   (1047 perm/sec)   p_kst 8.035503e-04   p_cons 8.107491e-01   p_joint 8.035503e-04

Joint ci ratio: 1.059808e-01	ci left: 7.614938e-04	ci right 8.472804e-04	k: 1366	n:1700000
Cons ci ratio: 1.452545e-03	ci left: 8.101651e-01	ci right 8.113433e-01	k: 1378283	n:1700000
KS ci ratio: 1.059808e-01	ci left: 7.614938e-04	ci right 8.472804e-04	k: 1366	n:1700000
ILVBL   1700000 perm   1632 sec   (1042 perm/sec)   p_kst 8.035294e-04   p_cons 8.107547e-01   p_joint 8.035294e-04

Joint ci ratio: 1.056720e-01	ci left: 7.615951e-04	ci right 8.471276e-04	k: 1374	n:1710000
Cons ci ratio: 1.448354e-03	ci left: 8.101536e-01	ci right 8.113284e-01	k: 1386368	n:1710000
KS ci ratio: 1.056720e-01	ci left: 7.615951e-04	ci right 8.471276e-04	k: 1374	n:1710000
ILVBL   1710000 perm   1649 sec   (1037 perm/sec)   p_kst 8.035088e-04   p_cons 8.107415e-01   p_joint 8.035088e-04

Joint ci ratio: 1.054423e-01	ci left: 7.605635e-04	ci right 8.457829e-04	k: 1380	n:1720000
Cons ci ratio: 1.444168e-03	ci left: 8.101487e-01	ci right 8.113201e-01	k: 1394464	n:1720000
KS ci ratio: 1.054423e-01	ci left: 7.605635e-04	ci right 8.457829e-04	k: 1380	n:1720000
ILVBL   1720000 perm   1666 sec   (1032 perm/sec)   p_kst 8.023256e-04   p_cons 8.107349e-01   p_joint 8.023256e-04

Joint ci ratio: 1.051761e-01	ci left: 7.601069e-04	ci right 8.450468e-04	k: 1387	n:1730000
Cons ci ratio: 1.439843e-03	ci left: 8.101814e-01	ci right 8.113493e-01	k: 1402625	n:1730000
KS ci ratio: 1.051761e-01	ci left: 7.601069e-04	ci right 8.450468e-04	k: 1387	n:1730000
ILVBL   1730000 perm   1684 sec   (1027 perm/sec)   p_kst 8.017341e-04   p_cons 8.107659e-01   p_joint 8.017341e-04

Joint ci ratio: 1.049119e-01	ci left: 7.596557e-04	ci right 8.443189e-04	k: 1394	n:1740000
Cons ci ratio: 1.435707e-03	ci left: 8.101816e-01	ci right 8.113461e-01	k: 1410730	n:1740000
KS ci ratio: 1.049119e-01	ci left: 7.596557e-04	ci right 8.443189e-04	k: 1394	n:1740000
ILVBL   1740000 perm   1702 sec   (1023 perm/sec)   p_kst 8.011494e-04   p_cons 8.107644e-01   p_joint 8.011494e-04

Joint ci ratio: 1.047619e-01	ci left: 7.575406e-04	ci right 8.418399e-04	k: 1398	n:1750000
Cons ci ratio: 1.431659e-03	ci left: 8.101703e-01	ci right 8.113315e-01	k: 1418815	n:1750000
KS ci ratio: 1.047619e-01	ci left: 7.575406e-04	ci right 8.418399e-04	k: 1398	n:1750000
ILVBL   1750000 perm   1719 sec   (1018 perm/sec)   p_kst 7.988571e-04   p_cons 8.107514e-01   p_joint 7.988571e-04

Joint ci ratio: 1.045008e-01	ci left: 7.571095e-04	ci right 8.411380e-04	k: 1405	n:1760000
Cons ci ratio: 1.427365e-03	ci left: 8.102194e-01	ci right 8.113773e-01	k: 1427006	n:1760000
KS ci ratio: 1.045008e-01	ci left: 7.571095e-04	ci right 8.411380e-04	k: 1405	n:1760000
ILVBL   1760000 perm   1737 sec   (1013 perm/sec)   p_kst 7.982955e-04   p_cons 8.107989e-01   p_joint 7.982955e-04

Joint ci ratio: 1.041311e-01	ci left: 7.583344e-04	ci right 8.421829e-04	k: 1415	n:1770000
Cons ci ratio: 1.423178e-03	ci left: 8.102533e-01	ci right 8.114078e-01	k: 1435171	n:1770000
KS ci ratio: 1.041311e-01	ci left: 7.583344e-04	ci right 8.421829e-04	k: 1415	n:1770000
ILVBL   1770000 perm   1755 sec   (1009 perm/sec)   p_kst 7.994350e-04   p_cons 8.108311e-01   p_joint 7.994350e-04

Joint ci ratio: 1.038382e-01	ci left: 7.584516e-04	ci right 8.420627e-04	k: 1423	n:1780000
Cons ci ratio: 1.419282e-03	ci left: 8.102317e-01	ci right 8.113830e-01	k: 1443238	n:1780000
KS ci ratio: 1.038382e-01	ci left: 7.584516e-04	ci right 8.420627e-04	k: 1423	n:1780000
ILVBL   1780000 perm   1773 sec   (1004 perm/sec)   p_kst 7.994382e-04   p_cons 8.108079e-01   p_joint 7.994382e-04

Joint ci ratio: 1.035116e-01	ci left: 7.591120e-04	ci right 8.425167e-04	k: 1432	n:1790000
Cons ci ratio: 1.415124e-03	ci left: 8.102741e-01	ci right 8.114221e-01	k: 1451419	n:1790000
KS ci ratio: 1.035116e-01	ci left: 7.591120e-04	ci right 8.425167e-04	k: 1432	n:1790000
ILVBL   1790000 perm   1791 sec   (999 perm/sec)   p_kst 8.000000e-04   p_cons 8.108486e-01   p_joint 8.000000e-04

Joint ci ratio: 1.032238e-01	ci left: 7.592243e-04	ci right 8.423954e-04	k: 1440	n:1800000
Cons ci ratio: 1.411187e-03	ci left: 8.102760e-01	ci right 8.114208e-01	k: 1459528	n:1800000
KS ci ratio: 1.032238e-01	ci left: 7.592243e-04	ci right 8.423954e-04	k: 1440	n:1800000
ILVBL   1800000 perm   1809 sec   (995 perm/sec)   p_kst 8.000000e-04   p_cons 8.108489e-01   p_joint 8.000000e-04

Joint ci ratio: 1.030453e-01	ci left: 7.577208e-04	ci right 8.405749e-04	k: 1445	n:1810000
Cons ci ratio: 1.407302e-03	ci left: 8.102734e-01	ci right 8.114151e-01	k: 1467629	n:1810000
KS ci ratio: 1.030453e-01	ci left: 7.577208e-04	ci right 8.405749e-04	k: 1445	n:1810000
ILVBL   1810000 perm   1827 sec   (991 perm/sec)   p_kst 7.983425e-04   p_cons 8.108448e-01   p_joint 7.983425e-04

Joint ci ratio: 1.027261e-01	ci left: 7.583754e-04	ci right 8.410286e-04	k: 1454	n:1820000
Cons ci ratio: 1.403424e-03	ci left: 8.102764e-01	ci right 8.114149e-01	k: 1475740	n:1820000
KS ci ratio: 1.027261e-01	ci left: 7.583754e-04	ci right 8.410286e-04	k: 1454	n:1820000
ILVBL   1820000 perm   1845 sec   (987 perm/sec)   p_kst 7.989011e-04   p_cons 8.108462e-01   p_joint 7.989011e-04

Joint ci ratio: 1.023748e-01	ci left: 7.595556e-04	ci right 8.420374e-04	k: 1464	n:1830000
Cons ci ratio: 1.399533e-03	ci left: 8.102892e-01	ci right 8.114246e-01	k: 1483869	n:1830000
KS ci ratio: 1.023748e-01	ci left: 7.595556e-04	ci right 8.420374e-04	k: 1464	n:1830000
ILVBL   1830000 perm   1863 sec   (982 perm/sec)   p_kst 8.000000e-04   p_cons 8.108574e-01   p_joint 8.000000e-04

Joint ci ratio: 1.020272e-01	ci left: 7.607234e-04	ci right 8.430347e-04	k: 1474	n:1840000
Cons ci ratio: 1.395830e-03	ci left: 8.102676e-01	ci right 8.113999e-01	k: 1491935	n:1840000
KS ci ratio: 1.020272e-01	ci left: 7.607234e-04	ci right 8.430347e-04	k: 1474	n:1840000
ILVBL   1840000 perm   1881 sec   (978 perm/sec)   p_kst 8.010870e-04   p_cons 8.108342e-01   p_joint 8.010870e-04

Joint ci ratio: 1.017516e-01	ci left: 7.608256e-04	ci right 8.429123e-04	k: 1482	n:1850000
Cons ci ratio: 1.391994e-03	ci left: 8.102819e-01	ci right 8.114111e-01	k: 1500067	n:1850000
KS ci ratio: 1.017516e-01	ci left: 7.608256e-04	ci right 8.429123e-04	k: 1482	n:1850000
ILVBL   1850000 perm   1900 sec   (974 perm/sec)   p_kst 8.010811e-04   p_cons 8.108470e-01   p_joint 8.010811e-04

Joint ci ratio: 1.013084e-01	ci left: 7.635469e-04	ci right 8.455471e-04	k: 1495	n:1860000
Cons ci ratio: 1.388229e-03	ci left: 8.102875e-01	ci right 8.114137e-01	k: 1508183	n:1860000
KS ci ratio: 1.013084e-01	ci left: 7.635469e-04	ci right 8.455471e-04	k: 1495	n:1860000
ILVBL   1860000 perm   1918 sec   (970 perm/sec)   p_kst 8.037634e-04   p_cons 8.108511e-01   p_joint 8.037634e-04

Joint ci ratio: 1.010050e-01	ci left: 7.641549e-04	ci right 8.459600e-04	k: 1504	n:1870000
Cons ci ratio: 1.384538e-03	ci left: 8.102834e-01	ci right 8.114066e-01	k: 1516281	n:1870000
KS ci ratio: 1.010050e-01	ci left: 7.641549e-04	ci right 8.459600e-04	k: 1504	n:1870000
ILVBL   1870000 perm   1937 sec   (965 perm/sec)   p_kst 8.042781e-04   p_cons 8.108455e-01   p_joint 8.042781e-04

Joint ci ratio: 1.008043e-01	ci left: 7.632012e-04	ci right 8.447322e-04	k: 1510	n:1880000
Cons ci ratio: 1.380777e-03	ci left: 8.103012e-01	ci right 8.114213e-01	k: 1524420	n:1880000
KS ci ratio: 1.008043e-01	ci left: 7.632012e-04	ci right 8.447322e-04	k: 1510	n:1880000
ILVBL   1880000 perm   1956 sec   (961 perm/sec)   p_kst 8.031915e-04   p_cons 8.108617e-01   p_joint 8.031915e-04

Joint ci ratio: 1.005717e-01	ci left: 7.627735e-04	ci right 8.440597e-04	k: 1517	n:1890000
Cons ci ratio: 1.377145e-03	ci left: 8.102970e-01	ci right 8.114142e-01	k: 1532518	n:1890000
KS ci ratio: 1.005717e-01	ci left: 7.627735e-04	ci right 8.440597e-04	k: 1517	n:1890000
ILVBL   1890000 perm   1975 sec   (957 perm/sec)   p_kst 8.026455e-04   p_cons 8.108561e-01   p_joint 8.026455e-04

Joint ci ratio: 1.004065e-01	ci left: 7.613243e-04	ci right 8.423150e-04	k: 1522	n:1900000
Cons ci ratio: 1.373503e-03	ci left: 8.103014e-01	ci right 8.114156e-01	k: 1540632	n:1900000
KS ci ratio: 1.004065e-01	ci left: 7.613243e-04	ci right 8.423150e-04	k: 1522	n:1900000
ILVBL   1900000 perm   1994 sec   (953 perm/sec)   p_kst 8.010526e-04   p_cons 8.108589e-01   p_joint 8.010526e-04

Joint ci ratio: 1.001111e-01	ci left: 7.619322e-04	ci right 8.427351e-04	k: 1531	n:1910000
Cons ci ratio: 1.369881e-03	ci left: 8.103078e-01	ci right 8.114190e-01	k: 1548750	n:1910000
KS ci ratio: 1.001111e-01	ci left: 7.619322e-04	ci right 8.427351e-04	k: 1531	n:1910000
ILVBL   1910000 perm   2013 sec   (949 perm/sec)   p_kst 8.015707e-04   p_cons 8.108639e-01   p_joint 8.015707e-04

Joint ci ratio: 9.988322e-02	ci left: 7.615185e-04	ci right 8.420829e-04	k: 1538	n:1920000
Cons ci ratio: 1.366259e-03	ci left: 8.103203e-01	ci right 8.114287e-01	k: 1556880	n:1920000
KS ci ratio: 9.988322e-02	ci left: 7.615185e-04	ci right 8.420829e-04	k: 1538	n:1920000
ILVBL   1920000 perm   2032 sec   (945 perm/sec)   p_kst 8.010417e-04   p_cons 8.108750e-01   p_joint 8.010417e-04

Outputting figure to mutsig2_images.part000000000085/ILVBL.2_1959_1920000_0.00080104_0.81088_0.00080104.png
                gene_name: ILVBL
               theta_stop: 0.100 
                    nperm: 1920000 
                     p_ks: 0.00080 
        ci_ks_bounds_left: 0.00076 
       ci_ks_bounds_right: 0.00084 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.00080 
     ci_joint_bounds_left: 0.00076 
    ci_joint_bounds_right: 0.00084 

Current progress: 76 percent done.
IMPA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.092823e-03	ci left: 9.733385e-01	ci right 9.793796e-01	k: 9765	n:10000
Cons ci ratio: 6.760682e-02	ci left: 2.430195e-01	ci right 2.601254e-01	k: 2515	n:10000
KS ci ratio: 2.176870e-02	ci left: 7.558549e-01	ci right 7.725909e-01	k: 7643	n:10000
IMPA1   10000 perm   2 sec   (6425 perm/sec)   p_kst 7.643000e-01   p_cons 2.515000e-01   p_joint 9.765000e-01

Outputting figure to mutsig2_images.part000000000085/IMPA1.2_1047_10000_0.7643_0.2515_0.9765.png
                gene_name: IMPA1
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 78 percent done.
IMPDH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.527676e-02	ci left: 6.972641e-01	ci right 7.152157e-01	k: 7063	n:10000
KS ci ratio: 1.930025e-02	ci left: 7.969948e-01	ci right 8.126273e-01	k: 8049	n:10000
IMPDH1   10000 perm   2 sec   (5908 perm/sec)   p_kst 8.049000e-01   p_cons 7.063000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000085/IMPDH1.2_1882_10000_0.8049_0.7063_1.png
                gene_name: IMPDH1
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
INA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.039732e-03	ci left: 9.737631e-01	ci right 9.797547e-01	k: 9769	n:10000
Cons ci ratio: 2.866147e-02	ci left: 6.421684e-01	ci right 6.609432e-01	k: 6516	n:10000
KS ci ratio: 1.189079e-02	ci left: 9.101855e-01	ci right 9.211709e-01	k: 9158	n:10000
INA   10000 perm   2 sec   (6405 perm/sec)   p_kst 9.158000e-01   p_cons 6.516000e-01   p_joint 9.769000e-01

Outputting figure to mutsig2_images.part000000000085/INA.2_1512_10000_0.9158_0.6516_0.9769.png
                gene_name: INA
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 82 percent done.
INF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.870133e-02	ci left: 2.370897e-01	ci right 2.540587e-01	k: 2455	n:10000
Cons ci ratio: 9.719346e-02	ci left: 1.330589e-01	ci right 1.467516e-01	k: 1398	n:10000
KS ci ratio: 2.803927e-02	ci left: 6.521295e-01	ci right 6.707764e-01	k: 6615	n:10000
INF2   10000 perm   2 sec   (4804 perm/sec)   p_kst 6.615000e-01   p_cons 1.398000e-01   p_joint 2.455000e-01

Outputting figure to mutsig2_images.part000000000085/INF2.2_3871_10000_0.6615_0.1398_0.2455.png
                gene_name: INF2
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 84 percent done.
ING4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.090273e-02	ci left: 2.257305e-01	ci right 2.424247e-01	k: 2340	n:10000
Cons ci ratio: 7.827576e-02	ci left: 1.925924e-01	ci right 2.083825e-01	k: 2004	n:10000
KS ci ratio: 3.635020e-02	ci left: 5.277682e-01	ci right 5.474099e-01	k: 5376	n:10000
ING4   10000 perm   1 sec   (6955 perm/sec)   p_kst 5.376000e-01   p_cons 2.004000e-01   p_joint 2.340000e-01

Outputting figure to mutsig2_images.part000000000085/ING4.2_782_10000_0.5376_0.2004_0.234.png
                gene_name: ING4
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 87 percent done.
INO80B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.832654e-03	ci left: 9.670990e-01	ci right 9.738232e-01	k: 9706	n:10000
Cons ci ratio: 7.015953e-02	ci left: 2.294830e-01	ci right 2.462699e-01	k: 2378	n:10000
KS ci ratio: 1.578567e-02	ci left: 8.535544e-01	ci right 8.672349e-01	k: 8605	n:10000
INO80B   10000 perm   2 sec   (6369 perm/sec)   p_kst 8.605000e-01   p_cons 2.378000e-01   p_joint 9.706000e-01

Outputting figure to mutsig2_images.part000000000085/INO80B.2_1091_10000_0.8605_0.2378_0.9706.png
                gene_name: INO80B
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.97 

Current progress: 89 percent done.
INPP5E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.947396e-02	ci left: 6.292960e-01	ci right 6.482231e-01	k: 6388	n:10000
Cons ci ratio: 3.117628e-02	ci left: 6.028698e-01	ci right 6.220646e-01	k: 6125	n:10000
KS ci ratio: 5.859226e-02	ci left: 3.000492e-01	ci right 3.182621e-01	k: 3091	n:10000
INPP5E   10000 perm   2 sec   (5789 perm/sec)   p_kst 3.091000e-01   p_cons 6.125000e-01   p_joint 6.388000e-01

Outputting figure to mutsig2_images.part000000000085/INPP5E.2_1975_10000_0.3091_0.6125_0.6388.png
                gene_name: INPP5E
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 91 percent done.
INPP5J
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.922441e-02	ci left: 2.343232e-01	ci right 2.512269e-01	k: 2427	n:10000
Cons ci ratio: 4.117193e-02	ci left: 4.655704e-01	ci right 4.852439e-01	k: 4754	n:10000
KS ci ratio: 1.049122e-01	ci left: 1.160369e-01	ci right 1.289839e-01	k: 1224	n:10000
INPP5J   10000 perm   2 sec   (6099 perm/sec)   p_kst 1.224000e-01   p_cons 4.754000e-01   p_joint 2.427000e-01

Joint ci ratio: 4.986518e-02	ci left: 2.301288e-01	ci right 2.419480e-01	k: 4720	n:20000
Cons ci ratio: 2.913571e-02	ci left: 4.681082e-01	ci right 4.819991e-01	k: 9501	n:20000
KS ci ratio: 7.325148e-02	ci left: 1.206431e-01	ci right 1.298661e-01	k: 2504	n:20000
INPP5J   20000 perm   4 sec   (5456 perm/sec)   p_kst 1.252000e-01   p_cons 4.750500e-01   p_joint 2.360000e-01

Outputting figure to mutsig2_images.part000000000085/INPP5J.2_1969_20000_0.1252_0.47505_0.236.png
                gene_name: INPP5J
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 93 percent done.
INSIG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.835992e-02	ci left: 3.017350e-01	ci right 3.199753e-01	k: 3108	n:10000
Cons ci ratio: 9.627528e-02	ci left: 1.353117e-01	ci right 1.490975e-01	k: 1421	n:10000
KS ci ratio: 6.751719e-02	ci left: 2.435138e-01	ci right 2.606309e-01	k: 2520	n:10000
INSIG1   10000 perm   2 sec   (6214 perm/sec)   p_kst 2.520000e-01   p_cons 1.421000e-01   p_joint 3.108000e-01

Outputting figure to mutsig2_images.part000000000085/INSIG1.2_1017_10000_0.252_0.1421_0.3108.png
                gene_name: INSIG1
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 96 percent done.
INTS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.759750e-02	ci left: 8.248311e-01	ci right 8.395749e-01	k: 8323	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
INTS2   10000 perm   2 sec   (4993 perm/sec)   p_kst 1   p_cons 8.323000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000085/INTS2.2_3715_10000_1_0.8323_1.png
                gene_name: INTS2
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
INTS7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.885856e-02	ci left: 4.944505e-01	ci right 5.141470e-01	k: 5043	n:10000
Cons ci ratio: 1.006498e-01	ci left: 1.250322e-01	ci right 1.383831e-01	k: 1316	n:10000
KS ci ratio: 2.703753e-02	ci left: 6.683385e-01	ci right 6.867580e-01	k: 6776	n:10000
INTS7   10000 perm   2 sec   (5321 perm/sec)   p_kst 6.776000e-01   p_cons 1.316000e-01   p_joint 5.043000e-01

Joint ci ratio: 2.824252e-02	ci left: 4.836485e-01	ci right 4.975542e-01	k: 9812	n:20000
Cons ci ratio: 7.150001e-02	ci left: 1.259590e-01	ci right 1.353487e-01	k: 2612	n:20000
KS ci ratio: 1.886578e-02	ci left: 6.769022e-01	ci right 6.898445e-01	k: 13668	n:20000
INTS7   20000 perm   4 sec   (4796 perm/sec)   p_kst 6.834000e-01   p_cons 1.306000e-01   p_joint 4.906000e-01

Outputting figure to mutsig2_images.part000000000085/INTS7.2_2969_20000_0.6834_0.1306_0.4906.png
                gene_name: INTS7
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000085
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 85 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1425>
Subject: Job 8004184: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1425>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000086> was used as the working directory.
Started at Sun Nov 11 15:06:57 2012
Results reported at Sun Nov 11 15:21:13 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000086.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000086.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 86  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000086.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1001.35 sec.
    Max Memory :      4801 MB
    Max Swap   :      7128 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
86
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 86
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 86: processing genes 7691 - 7780
Calculating significance of each gene.
Using projection method.
7691	INVS	9.760152e-01
7692	IP6K1	1
7693	IP6K2	1
7694	IP6K3	5.369726e-01
7695	IPCEF1	1
7696	IPMK	3.961048e-01
7697	IPO11	1.315588e-01
7698	IPO13	9.246738e-01
7699	IPO4	8.870247e-01
7700	IPO5	9.025957e-01
7701	IPO7	1
7702	IPO8	7.341074e-01
7703	IPO9	6.524326e-01
7704	IPP	5.276067e-01
7705	IPPK	4.238214e-01
7706	IQCA1	9.476203e-01
7707	IQCB1	1.787225e-01
7708	IQCC	8.016362e-01
7709	IQCD	1
7710	IQCE	4.328127e-01
7711	IQCF1	5.847873e-01
7712	IQCF2	3.480632e-01
7713	IQCF3	1
7714	IQCG	4.021672e-02
7715	IQCH	8.327700e-01
7716	IQCJ	3.090198e-02
7717	IQCK	1
7718	IQGAP1	8.819750e-01
7719	IQGAP2	5.596072e-01
7720	IQGAP3	7.872674e-01
7721	IQSEC1	9.712258e-01
7722	IQSEC2	4.830614e-01
7723	IQSEC3	8.746558e-01
7724	IQUB	1
7725	IRAK1	4.469057e-01
7726	IRAK1BP1	6.895808e-01
7727	IRAK2	8.577105e-01
7728	IRAK3	1
7729	IRAK4	1
7730	IREB2	1
7731	IRF1	7.475137e-01
7732	IRF2	1
7733	IRF2BP1	7.046036e-01
7734	IRF2BP2	1.938968e-01
7735	IRF3	5.975623e-01
7736	IRF4	4.618675e-01
7737	IRF5	1
7738	IRF6	1.117676e-02
7739	IRF7	1
7740	IRF8	1.679869e-01
7741	IRF9	1
7742	IRGC	8.043000e-01
7743	IRGQ	3.639915e-01
7744	IRS1	5.859816e-01
7745	IRS2	4.372491e-01
7746	IRS4	1
7747	IRX1	1.272488e-02
7748	IRX2	1.410571e-01
7749	IRX3	3.197794e-01
7750	IRX4	2.354602e-01
7751	IRX5	5.609464e-01
7752	IRX6	3.467015e-01
7753	ISCA1	1.085800e-01
7754	ISCA1P1	1
7755	ISCA2	1.485917e-01
7756	ISCU	1
7757	ISG15	4.093420e-01
7758	ISG20	1.003523e-01
7759	ISG20L2	1.562285e-01
7760	ISL1	1
7761	ISL2	7.668895e-01
7762	ISLR	1
7763	ISLR2	8.916862e-01
7764	ISM1	4.644890e-01
7765	ISM2	4.467324e-01
7766	ISOC1	7.720310e-02
7767	ISOC2	1
7768	ISPD	6.748541e-01
7769	ISX	1.008213e-01
7770	ISY1	1
7771	ISYNA1	1
7772	ITCH	8.647945e-01
7773	ITFG1	4.992158e-01
7774	ITFG2	3.786474e-01
7775	ITFG3	9.388218e-01
7776	ITGA1	6.675444e-01
7777	ITGA10	4.246642e-01
7778	ITGA11	9.243251e-01
7779	ITGA2	5.457463e-01
7780	ITGA2B	8.661054e-01
Done

Running MutSig 2:
Scatter job 86: processing genes 7691 - 7780
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
IQGAP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.722967e-02	ci left: 3.981463e-01	ci right 4.175075e-01	k: 4078	n:10000
Cons ci ratio: 1.880739e-02	ci left: 8.051156e-01	ci right 8.205017e-01	k: 8129	n:10000
KS ci ratio: 7.767058e-02	ci left: 1.950552e-01	ci right 2.109182e-01	k: 2029	n:10000
IQGAP3   10000 perm   3 sec   (3277 perm/sec)   p_kst 2.029000e-01   p_cons 8.129000e-01   p_joint 4.078000e-01

Outputting figure to mutsig2_images.part000000000086/IQGAP3.11_5048_10000_0.2029_0.8129_0.4078.png
                gene_name: IQGAP3
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 2 percent done.
IPO11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.025256e-02	ci left: 1.514904e-01	ci right 1.659090e-01	k: 1586	n:10000
Cons ci ratio: 1.340238e-01	ci left: 7.349567e-02	ci right 8.415122e-02	k: 787	n:10000
KS ci ratio: 5.693376e-02	ci left: 3.123490e-01	ci right 3.307550e-01	k: 3215	n:10000
IPO11   10000 perm   2 sec   (4095 perm/sec)   p_kst 3.215000e-01   p_cons 7.870000e-02   p_joint 1.586000e-01

Joint ci ratio: 6.609905e-02	ci left: 1.445843e-01	ci right 1.545178e-01	k: 2990	n:20000
Cons ci ratio: 1.015387e-01	ci left: 6.581811e-02	ci right 7.290771e-02	k: 1386	n:20000
KS ci ratio: 4.008824e-02	ci left: 3.169182e-01	ci right 3.299332e-01	k: 6468	n:20000
IPO11   20000 perm   5 sec   (3778 perm/sec)   p_kst 3.234000e-01   p_cons 6.930000e-02   p_joint 1.495000e-01

Joint ci ratio: 5.602285e-02	ci left: 1.363554e-01	ci right 1.442477e-01	k: 4208	n:30000
Cons ci ratio: 7.579121e-02	ci left: 7.875547e-02	ci right 8.499245e-02	k: 2455	n:30000
KS ci ratio: 3.391302e-02	ci left: 3.028775e-01	ci right 3.133597e-01	k: 9243	n:30000
IPO11   30000 perm   8 sec   (3620 perm/sec)   p_kst 3.081000e-01   p_cons 8.183333e-02   p_joint 1.402667e-01

Outputting figure to mutsig2_images.part000000000086/IPO11.8_3168_30000_0.3081_0.081833_0.14027.png
                gene_name: IPO11
               theta_stop: 0.076 
                    nperm: 30000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.082 
      ci_cons_bounds_left: 0.079 
     ci_cons_bounds_right: 0.085 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.14 

Current progress: 4 percent done.
IQGAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.273525e-02	ci left: 3.464097e-01	ci right 3.652744e-01	k: 3558	n:10000
Cons ci ratio: 3.676892e-02	ci left: 5.220620e-01	ci right 5.417194e-01	k: 5319	n:10000
KS ci ratio: 7.383106e-02	ci left: 2.117161e-01	ci right 2.280474e-01	k: 2198	n:10000
IQGAP1   10000 perm   3 sec   (3577 perm/sec)   p_kst 2.198000e-01   p_cons 5.319000e-01   p_joint 3.558000e-01

Outputting figure to mutsig2_images.part000000000086/IQGAP1.8_5126_10000_0.2198_0.5319_0.3558.png
                gene_name: IQGAP1
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 5 percent done.
ITGA10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.526235e-02	ci left: 1.378591e-01	ci right 1.517485e-01	k: 1447	n:10000
Cons ci ratio: 1.920312e-01	ci left: 3.614841e-02	ci right 4.392246e-02	k: 399	n:10000
KS ci ratio: 4.766254e-02	ci left: 3.937641e-01	ci right 4.130922e-01	k: 4034	n:10000
ITGA10   10000 perm   2 sec   (4177 perm/sec)   p_kst 4.034000e-01   p_cons 3.990000e-02   p_joint 1.447000e-01

Joint ci ratio: 8.718300e-02	ci left: 8.778382e-02	ci right 9.583530e-02	k: 1835	n:20000
Cons ci ratio: 1.379597e-01	ci left: 3.611746e-02	ci right 4.151767e-02	k: 775	n:20000
KS ci ratio: 3.410101e-02	ci left: 3.910070e-01	ci right 4.046227e-01	k: 7956	n:20000
ITGA10   20000 perm   5 sec   (3828 perm/sec)   p_kst 3.978000e-01   p_cons 3.875000e-02   p_joint 9.175000e-02

Joint ci ratio: 7.081762e-02	ci left: 8.937555e-02	ci right 9.597024e-02	k: 2779	n:30000
Cons ci ratio: 1.107286e-01	ci left: 3.787542e-02	ci right 4.234753e-02	k: 1202	n:30000
KS ci ratio: 2.787721e-02	ci left: 3.916897e-01	ci right 4.027969e-01	k: 11917	n:30000
ITGA10   30000 perm   8 sec   (3691 perm/sec)   p_kst 3.972333e-01   p_cons 4.006667e-02   p_joint 9.263333e-02

Joint ci ratio: 6.375444e-02	ci left: 8.359038e-02	ci right 8.911984e-02	k: 3453	n:40000
Cons ci ratio: 9.576977e-02	ci left: 3.827156e-02	ci right 4.214555e-02	k: 1607	n:40000
KS ci ratio: 2.416083e-02	ci left: 3.920756e-01	ci right 4.016894e-01	k: 15875	n:40000
ITGA10   40000 perm   11 sec   (3590 perm/sec)   p_kst 3.968750e-01   p_cons 4.017500e-02   p_joint 8.632500e-02

Outputting figure to mutsig2_images.part000000000086/ITGA10.8_3624_40000_0.39687_0.040175_0.086325.png
                gene_name: ITGA10
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.040 
      ci_cons_bounds_left: 0.038 
     ci_cons_bounds_right: 0.042 
                  p_joint: 0.086 
     ci_joint_bounds_left: 0.084 
    ci_joint_bounds_right: 0.089 

Current progress: 7 percent done.
IQSEC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.546793e-02	ci left: 2.551824e-01	ci right 2.725554e-01	k: 2638	n:10000
Cons ci ratio: 6.924324e-02	ci left: 2.342244e-01	ci right 2.511257e-01	k: 2426	n:10000
KS ci ratio: 8.661395e-02	ci left: 1.625864e-01	ci right 1.774064e-01	k: 1699	n:10000
IQSEC3   10000 perm   2 sec   (4336 perm/sec)   p_kst 1.699000e-01   p_cons 2.426000e-01   p_joint 2.638000e-01

Outputting figure to mutsig2_images.part000000000086/IQSEC3.7_3684_10000_0.1699_0.2426_0.2638.png
                gene_name: IQSEC3
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 9 percent done.
IQUB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.621760e-02	ci left: 2.508304e-01	ci right 2.681099e-01	k: 2594	n:10000
Cons ci ratio: 3.083585e-02	ci left: 6.080924e-01	ci right 6.272390e-01	k: 6177	n:10000
KS ci ratio: 9.276662e-02	ci left: 1.444270e-01	ci right 1.585767e-01	k: 1514	n:10000
IQUB   10000 perm   2 sec   (4801 perm/sec)   p_kst 1.514000e-01   p_cons 6.177000e-01   p_joint 2.594000e-01

Outputting figure to mutsig2_images.part000000000086/IQUB.7_2424_10000_0.1514_0.6177_0.2594.png
                gene_name: IQUB
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 11 percent done.
IQGAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.237972e-02	ci left: 4.511926e-01	ci right 4.708301e-01	k: 4610	n:10000
Cons ci ratio: 6.855334e-02	ci left: 2.378802e-01	ci right 2.548678e-01	k: 2463	n:10000
KS ci ratio: 4.339117e-02	ci left: 4.395167e-01	ci right 4.591129e-01	k: 4493	n:10000
IQGAP2   10000 perm   3 sec   (3618 perm/sec)   p_kst 4.493000e-01   p_cons 2.463000e-01   p_joint 4.610000e-01

Outputting figure to mutsig2_images.part000000000086/IQGAP2.6_4872_10000_0.4493_0.2463_0.461.png
                gene_name: IQGAP2
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 12 percent done.
IRF6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.061291e-01	ci left: 3.129396e-02	ci right 3.858023e-02	k: 348	n:10000
Cons ci ratio: 1.123944e-02	ci left: 9.187348e-01	ci right 9.292167e-01	k: 9241	n:10000
KS ci ratio: 4.449803e-01	ci left: 5.992474e-03	ci right 9.503426e-03	k: 76	n:10000
IRF6   10000 perm   2 sec   (4945 perm/sec)   p_kst 7.600000e-03   p_cons 9.241000e-01   p_joint 3.480000e-02

Joint ci ratio: 1.616844e-01	ci left: 2.623765e-02	ci right 3.090076e-02	k: 570	n:20000
Cons ci ratio: 7.948512e-03	ci left: 9.202915e-01	ci right 9.276847e-01	k: 18481	n:20000
KS ci ratio: 3.325311e-01	ci left: 5.754049e-03	ci right 8.092762e-03	k: 137	n:20000
IRF6   20000 perm   5 sec   (4439 perm/sec)   p_kst 6.850000e-03   p_cons 9.240500e-01   p_joint 2.850000e-02

Joint ci ratio: 1.589639e-01	ci left: 1.828556e-02	ci right 2.147505e-02	k: 595	n:30000
Cons ci ratio: 6.574552e-03	ci left: 9.191112e-01	ci right 9.252067e-01	k: 27666	n:30000
KS ci ratio: 2.708548e-01	ci left: 5.994619e-03	ci right 7.902745e-03	k: 207	n:30000
IRF6   30000 perm   7 sec   (4234 perm/sec)   p_kst 6.900000e-03   p_cons 9.222000e-01   p_joint 1.983333e-02

Joint ci ratio: 1.108788e-01	ci left: 2.861754e-02	ci right 3.200110e-02	k: 1211	n:40000
Cons ci ratio: 5.678633e-03	ci left: 9.199126e-01	ci right 9.251759e-01	k: 36903	n:40000
KS ci ratio: 2.258478e-01	ci left: 6.630713e-03	ci right 8.341955e-03	k: 298	n:40000
IRF6   40000 perm   10 sec   (4084 perm/sec)   p_kst 7.450000e-03   p_cons 9.225750e-01   p_joint 3.027500e-02

Joint ci ratio: 1.108506e-01	ci left: 2.304584e-02	ci right 2.576976e-02	k: 1219	n:50000
Cons ci ratio: 5.090199e-03	ci left: 9.198784e-01	ci right 9.245924e-01	k: 46113	n:50000
KS ci ratio: 2.022094e-01	ci left: 6.705477e-03	ci right 8.232543e-03	k: 372	n:50000
IRF6   50000 perm   12 sec   (4016 perm/sec)   p_kst 7.440000e-03   p_cons 9.222600e-01   p_joint 2.438000e-02

Joint ci ratio: 1.064941e-01	ci left: 2.090607e-02	ci right 2.327381e-02	k: 1324	n:60000
Cons ci ratio: 4.646951e-03	ci left: 9.200786e-01	ci right 9.243805e-01	k: 55335	n:60000
KS ci ratio: 1.843012e-01	ci left: 6.793417e-03	ci right 8.188191e-03	k: 448	n:60000
IRF6   60000 perm   15 sec   (3901 perm/sec)   p_kst 7.466667e-03   p_cons 9.222500e-01   p_joint 2.206667e-02

Joint ci ratio: 1.180799e-01	ci left: 1.458400e-02	ci right 1.642790e-02	k: 1084	n:70000
Cons ci ratio: 4.074059e-03	ci left: 9.277956e-01	ci right 9.315973e-01	k: 65080	n:70000
KS ci ratio: 1.726052e-01	ci left: 6.682726e-03	ci right 7.958626e-03	k: 511	n:70000
IRF6   70000 perm   18 sec   (3843 perm/sec)   p_kst 7.300000e-03   p_cons 9.297143e-01   p_joint 1.548571e-02

Joint ci ratio: 1.131243e-01	ci left: 1.395033e-02	ci right 1.563513e-02	k: 1182	n:80000
Cons ci ratio: 3.815322e-03	ci left: 9.277675e-01	ci right 9.313263e-01	k: 74365	n:80000
KS ci ratio: 1.620364e-01	ci left: 6.673791e-03	ci right 7.862363e-03	k: 580	n:80000
IRF6   80000 perm   21 sec   (3786 perm/sec)   p_kst 7.250000e-03   p_cons 9.295625e-01   p_joint 1.477500e-02

Joint ci ratio: 1.040611e-01	ci left: 1.471386e-02	ci right 1.633980e-02	k: 1396	n:90000
Cons ci ratio: 3.607955e-03	ci left: 9.274712e-01	ci right 9.308344e-01	k: 83625	n:90000
KS ci ratio: 1.537949e-01	ci left: 6.615265e-03	ci right 7.727966e-03	k: 644	n:90000
IRF6   90000 perm   24 sec   (3717 perm/sec)   p_kst 7.155556e-03   p_cons 9.291667e-01   p_joint 1.551111e-02

Joint ci ratio: 1.017682e-01	ci left: 1.387544e-02	ci right 1.537291e-02	k: 1461	n:100000
Cons ci ratio: 3.430235e-03	ci left: 9.272695e-01	ci right 9.304656e-01	k: 92888	n:100000
KS ci ratio: 1.454605e-01	ci left: 6.685317e-03	ci right 7.743568e-03	k: 720	n:100000
IRF6   100000 perm   28 sec   (3632 perm/sec)   p_kst 7.200000e-03   p_cons 9.288800e-01   p_joint 1.461000e-02

Joint ci ratio: 9.501959e-02	ci left: 1.451188e-02	ci right 1.596839e-02	k: 1675	n:110000
Cons ci ratio: 3.260855e-03	ci left: 9.277418e-01	ci right 9.307810e-01	k: 102220	n:110000
KS ci ratio: 1.387882e-01	ci left: 6.700074e-03	ci right 7.707989e-03	k: 791	n:110000
IRF6   110000 perm   31 sec   (3568 perm/sec)   p_kst 7.190909e-03   p_cons 9.292727e-01   p_joint 1.522727e-02

Joint ci ratio: 9.296587e-02	ci left: 1.392080e-02	ci right 1.528614e-02	k: 1751	n:120000
Cons ci ratio: 3.132244e-03	ci left: 9.273725e-01	ci right 9.302900e-01	k: 111461	n:120000
KS ci ratio: 1.326478e-01	ci left: 6.745530e-03	ci right 7.711847e-03	k: 866	n:120000
IRF6   120000 perm   34 sec   (3505 perm/sec)   p_kst 7.216667e-03   p_cons 9.288417e-01   p_joint 1.459167e-02

Joint ci ratio: 9.339785e-02	ci left: 1.274442e-02	ci right 1.400050e-02	k: 1737	n:130000
Cons ci ratio: 3.004520e-03	ci left: 9.276448e-01	ci right 9.304437e-01	k: 120777	n:130000
KS ci ratio: 1.286392e-01	ci left: 6.635869e-03	ci right 7.555554e-03	k: 921	n:130000
IRF6   130000 perm   38 sec   (3446 perm/sec)   p_kst 7.084615e-03   p_cons 9.290538e-01   p_joint 1.336154e-02

Joint ci ratio: 9.159310e-02	ci left: 1.232242e-02	ci right 1.351217e-02	k: 1807	n:140000
Cons ci ratio: 2.898127e-03	ci left: 9.275630e-01	ci right 9.302621e-01	k: 130049	n:140000
KS ci ratio: 1.242073e-01	ci left: 6.625314e-03	ci right 7.509572e-03	k: 988	n:140000
IRF6   140000 perm   41 sec   (3391 perm/sec)   p_kst 7.057143e-03   p_cons 9.289214e-01   p_joint 1.290714e-02

Joint ci ratio: 9.527302e-02	ci left: 1.062801e-02	ci right 1.169768e-02	k: 1673	n:150000
Cons ci ratio: 2.797618e-03	ci left: 9.277156e-01	ci right 9.303212e-01	k: 139354	n:150000
KS ci ratio: 1.200894e-01	ci left: 6.629574e-03	ci right 7.482981e-03	k: 1057	n:150000
IRF6   150000 perm   45 sec   (3350 perm/sec)   p_kst 7.046667e-03   p_cons 9.290267e-01   p_joint 1.115333e-02

Joint ci ratio: 8.023250e-02	ci left: 1.410985e-02	ci right 1.529533e-02	k: 2351	n:160000
Cons ci ratio: 2.711506e-03	ci left: 9.276235e-01	ci right 9.301484e-01	k: 148623	n:160000
KS ci ratio: 1.165643e-01	ci left: 6.609448e-03	ci right 7.433568e-03	k: 1122	n:160000
IRF6   160000 perm   48 sec   (3303 perm/sec)   p_kst 7.012500e-03   p_cons 9.288937e-01   p_joint 1.469375e-02

Joint ci ratio: 8.000940e-02	ci left: 1.336612e-02	ci right 1.448584e-02	k: 2366	n:170000
Cons ci ratio: 2.630300e-03	ci left: 9.276740e-01	ci right 9.301231e-01	k: 157914	n:170000
KS ci ratio: 1.133323e-01	ci left: 6.592013e-03	ci right 7.389645e-03	k: 1187	n:170000
IRF6   170000 perm   52 sec   (3253 perm/sec)   p_kst 6.982353e-03   p_cons 9.289059e-01   p_joint 1.391765e-02

Joint ci ratio: 8.251332e-02	ci left: 1.187209e-02	ci right 1.289926e-02	k: 2228	n:180000
Cons ci ratio: 2.552430e-03	ci left: 9.279046e-01	ci right 9.302815e-01	k: 167238	n:180000
KS ci ratio: 1.101782e-01	ci left: 6.598410e-03	ci right 7.373152e-03	k: 1256	n:180000
IRF6   180000 perm   56 sec   (3202 perm/sec)   p_kst 6.977778e-03   p_cons 9.291000e-01   p_joint 1.237778e-02

Joint ci ratio: 8.010313e-02	ci left: 1.194850e-02	ci right 1.295067e-02	k: 2364	n:190000
Cons ci ratio: 2.484647e-03	ci left: 9.279208e-01	ci right 9.302345e-01	k: 176526	n:190000
KS ci ratio: 1.069491e-01	ci left: 6.645393e-03	ci right 7.401344e-03	k: 1333	n:190000
IRF6   190000 perm   60 sec   (3155 perm/sec)   p_kst 7.015789e-03   p_cons 9.290842e-01   p_joint 1.244211e-02

Joint ci ratio: 7.853091e-02	ci left: 1.182152e-02	ci right 1.279269e-02	k: 2460	n:200000
Cons ci ratio: 2.424105e-03	ci left: 9.278204e-01	ci right 9.300772e-01	k: 185791	n:200000
KS ci ratio: 1.042116e-01	ci left: 6.658751e-03	ci right 7.395646e-03	k: 1404	n:200000
IRF6   200000 perm   64 sec   (3106 perm/sec)   p_kst 7.020000e-03   p_cons 9.289550e-01   p_joint 1.230000e-02

Joint ci ratio: 7.704766e-02	ci left: 1.170681e-02	ci right 1.264958e-02	k: 2556	n:210000
Cons ci ratio: 2.366240e-03	ci left: 9.278165e-01	ci right 9.300192e-01	k: 195074	n:210000
KS ci ratio: 1.015702e-01	ci left: 6.684986e-03	ci right 7.404913e-03	k: 1478	n:210000
IRF6   210000 perm   69 sec   (3056 perm/sec)   p_kst 7.038095e-03   p_cons 9.289238e-01   p_joint 1.217143e-02

Joint ci ratio: 7.792158e-02	ci left: 1.092936e-02	ci right 1.181995e-02	k: 2501	n:220000
Cons ci ratio: 2.307951e-03	ci left: 9.280654e-01	ci right 9.302142e-01	k: 204412	n:220000
KS ci ratio: 9.915210e-02	ci left: 6.704615e-03	ci right 7.408466e-03	k: 1551	n:220000
IRF6   220000 perm   73 sec   (3015 perm/sec)   p_kst 7.050000e-03   p_cons 9.291455e-01   p_joint 1.136818e-02

Outputting figure to mutsig2_images.part000000000086/IRF6.6_1432_220000_0.00705_0.92915_0.011368.png
                gene_name: IRF6
               theta_stop: 0.099 
                    nperm: 220000 
                     p_ks: 0.0070 
        ci_ks_bounds_left: 0.0067 
       ci_ks_bounds_right: 0.0074 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.011 
     ci_joint_bounds_left: 0.011 
    ci_joint_bounds_right: 0.012 

Current progress: 14 percent done.
IRS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.966541e-02	ci left: 2.924153e-01	ci right 3.105005e-01	k: 3014	n:10000
Cons ci ratio: 9.631476e-02	ci left: 1.352137e-01	ci right 1.489955e-01	k: 1420	n:10000
KS ci ratio: 5.705138e-02	ci left: 3.114560e-01	ci right 3.298486e-01	k: 3206	n:10000
IRS1   10000 perm   2 sec   (4436 perm/sec)   p_kst 3.206000e-01   p_cons 1.420000e-01   p_joint 3.014000e-01

Outputting figure to mutsig2_images.part000000000086/IRS1.6_3733_10000_0.3206_0.142_0.3014.png
                gene_name: IRS1
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 16 percent done.
ISLR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.158221e-02	ci left: 3.565488e-01	ci right 3.755293e-01	k: 3660	n:10000
Cons ci ratio: 1.212039e-02	ci left: 9.070994e-01	ci right 9.182588e-01	k: 9128	n:10000
KS ci ratio: 8.293560e-02	ci left: 1.749728e-01	ci right 1.902126e-01	k: 1825	n:10000
ISLR2   10000 perm   2 sec   (4737 perm/sec)   p_kst 1.825000e-01   p_cons 9.128000e-01   p_joint 3.660000e-01

Outputting figure to mutsig2_images.part000000000086/ISLR2.6_2242_10000_0.1825_0.9128_0.366.png
                gene_name: ISLR2
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 18 percent done.
ITGA11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.746868e-02	ci left: 5.126548e-01	ci right 5.323321e-01	k: 5225	n:10000
Cons ci ratio: 9.397593e-02	ci left: 1.411914e-01	ci right 1.552142e-01	k: 1481	n:10000
KS ci ratio: 2.481456e-02	ci left: 7.049308e-01	ci right 7.227445e-01	k: 7139	n:10000
ITGA11   10000 perm   2 sec   (4182 perm/sec)   p_kst 7.139000e-01   p_cons 1.481000e-01   p_joint 5.225000e-01

Outputting figure to mutsig2_images.part000000000086/ITGA11.6_3687_10000_0.7139_0.1481_0.5225.png
                gene_name: ITGA11
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 20 percent done.
IQCG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.839804e-02	ci left: 1.920999e-01	ci right 2.078753e-01	k: 1999	n:10000
Cons ci ratio: 4.355812e-02	ci left: 4.376211e-01	ci right 4.572096e-01	k: 4474	n:10000
KS ci ratio: 9.360549e-02	ci left: 1.421718e-01	ci right 1.562332e-01	k: 1491	n:10000
IQCG   10000 perm   2 sec   (5241 perm/sec)   p_kst 1.491000e-01   p_cons 4.474000e-01   p_joint 1.999000e-01

Outputting figure to mutsig2_images.part000000000086/IQCG.5_1372_10000_0.1491_0.4474_0.1999.png
                gene_name: IQCG
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 21 percent done.
IRX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.068314e-02	ci left: 3.647032e-01	ci right 3.837701e-01	k: 3742	n:10000
Cons ci ratio: 5.759258e-02	ci left: 3.073885e-01	ci right 3.257185e-01	k: 3165	n:10000
KS ci ratio: 5.407281e-02	ci left: 3.350832e-01	ci right 3.538075e-01	k: 3444	n:10000
IRX1   10000 perm   2 sec   (5405 perm/sec)   p_kst 3.444000e-01   p_cons 3.165000e-01   p_joint 3.742000e-01

Outputting figure to mutsig2_images.part000000000086/IRX1.5_1459_10000_0.3444_0.3165_0.3742.png
                gene_name: IRX1
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 23 percent done.
ISX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.293583e-01	ci left: 7.863503e-02	ci right 8.960867e-02	k: 840	n:10000
Cons ci ratio: 3.724407e-02	ci left: 5.156567e-01	ci right 5.353284e-01	k: 5255	n:10000
KS ci ratio: 3.176417e-01	ci left: 1.261754e-02	ci right 1.747097e-02	k: 149	n:10000
ISX   10000 perm   1 sec   (6818 perm/sec)   p_kst 1.490000e-02   p_cons 5.255000e-01   p_joint 8.400000e-02

Joint ci ratio: 1.105463e-01	ci left: 5.587115e-02	ci right 6.245774e-02	k: 1182	n:20000
Cons ci ratio: 2.715408e-02	ci left: 5.032959e-01	ci right 5.172011e-01	k: 10205	n:20000
KS ci ratio: 2.117242e-01	ci left: 1.506432e-02	ci right 1.867810e-02	k: 336	n:20000
ISX   20000 perm   3 sec   (5932 perm/sec)   p_kst 1.680000e-02   p_cons 5.102500e-01   p_joint 5.910000e-02

Joint ci ratio: 9.405248e-02	ci left: 5.215340e-02	ci right 5.733326e-02	k: 1641	n:30000
Cons ci ratio: 2.210310e-02	ci left: 5.061261e-01	ci right 5.174716e-01	k: 15354	n:30000
KS ci ratio: 1.752693e-01	ci left: 1.496121e-02	ci right 1.786686e-02	k: 491	n:30000
ISX   30000 perm   5 sec   (5578 perm/sec)   p_kst 1.636667e-02   p_cons 5.118000e-01   p_joint 5.470000e-02

Joint ci ratio: 1.237396e-01	ci left: 2.295860e-02	ci right 2.601097e-02	k: 978	n:40000
Cons ci ratio: 1.907611e-02	ci left: 5.086136e-01	ci right 5.184345e-01	k: 20541	n:40000
KS ci ratio: 1.487067e-01	ci left: 1.580399e-02	ci right 1.836681e-02	k: 682	n:40000
ISX   40000 perm   8 sec   (5333 perm/sec)   p_kst 1.705000e-02   p_cons 5.135250e-01   p_joint 2.445000e-02

Joint ci ratio: 8.737176e-02	ci left: 3.700662e-02	ci right 4.040720e-02	k: 1934	n:50000
Cons ci ratio: 1.702837e-02	ci left: 5.101285e-01	ci right 5.189098e-01	k: 25726	n:50000
KS ci ratio: 1.320471e-01	ci left: 1.617522e-02	ci right 1.848131e-02	k: 865	n:50000
ISX   50000 perm   10 sec   (5158 perm/sec)   p_kst 1.730000e-02   p_cons 5.145200e-01   p_joint 3.868000e-02

Joint ci ratio: 6.462214e-02	ci left: 5.591299e-02	ci right 5.966326e-02	k: 3466	n:60000
Cons ci ratio: 1.549207e-02	ci left: 5.122090e-01	ci right 5.202228e-01	k: 30973	n:60000
KS ci ratio: 1.214492e-01	ci left: 1.602922e-02	ci right 1.811787e-02	k: 1023	n:60000
ISX   60000 perm   12 sec   (5007 perm/sec)   p_kst 1.705000e-02   p_cons 5.162167e-01   p_joint 5.776667e-02

Joint ci ratio: 8.034695e-02	ci left: 3.156284e-02	ci right 3.421893e-02	k: 2301	n:70000
Cons ci ratio: 1.435078e-02	ci left: 5.122330e-01	ci right 5.196514e-01	k: 36116	n:70000
KS ci ratio: 1.153562e-01	ci left: 1.529162e-02	ci right 1.717736e-02	k: 1135	n:70000
ISX   70000 perm   14 sec   (4854 perm/sec)   p_kst 1.621429e-02   p_cons 5.159429e-01   p_joint 3.287143e-02

Joint ci ratio: 7.089185e-02	ci left: 3.550595e-02	ci right 3.812778e-02	k: 2944	n:80000
Cons ci ratio: 1.343251e-02	ci left: 5.121552e-01	ci right 5.190937e-01	k: 41250	n:80000
KS ci ratio: 1.076654e-01	ci left: 1.542169e-02	ci right 1.718864e-02	k: 1303	n:80000
ISX   80000 perm   17 sec   (4735 perm/sec)   p_kst 1.628750e-02   p_cons 5.156250e-01   p_joint 3.680000e-02

Joint ci ratio: 6.293715e-02	ci left: 4.002019e-02	ci right 4.263170e-02	k: 3718	n:90000
Cons ci ratio: 1.265031e-02	ci left: 5.129068e-01	ci right 5.194477e-01	k: 46456	n:90000
KS ci ratio: 1.012277e-01	ci left: 1.555862e-02	ci right 1.722832e-02	k: 1474	n:90000
ISX   90000 perm   19 sec   (4630 perm/sec)   p_kst 1.637778e-02   p_cons 5.161778e-01   p_joint 4.131111e-02

Joint ci ratio: 6.405403e-02	ci left: 3.494247e-02	ci right 3.726454e-02	k: 3609	n:100000
Cons ci ratio: 1.167862e-02	ci left: 5.266707e-01	ci right 5.328676e-01	k: 52977	n:100000
KS ci ratio: 9.650982e-02	ci left: 1.544613e-02	ci right 1.702211e-02	k: 1622	n:100000
ISX   100000 perm   22 sec   (4531 perm/sec)   p_kst 1.622000e-02   p_cons 5.297700e-01   p_joint 3.609000e-02

Outputting figure to mutsig2_images.part000000000086/ISX.5_754_100000_0.01622_0.52977_0.03609.png
                gene_name: ISX
               theta_stop: 0.097 
                    nperm: 100000 
                     p_ks: 0.016 
        ci_ks_bounds_left: 0.015 
       ci_ks_bounds_right: 0.017 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.036 
     ci_joint_bounds_left: 0.035 
    ci_joint_bounds_right: 0.037 

Current progress: 25 percent done.
ITGA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.248534e-02	ci left: 5.830946e-01	ci right 6.024514e-01	k: 5928	n:10000
Cons ci ratio: 8.186790e-02	ci left: 1.788095e-01	ci right 1.941736e-01	k: 1864	n:10000
KS ci ratio: 3.282282e-02	ci left: 5.780780e-01	ci right 5.974708e-01	k: 5878	n:10000
ITGA2   10000 perm   2 sec   (4271 perm/sec)   p_kst 5.878000e-01   p_cons 1.864000e-01   p_joint 5.928000e-01

Outputting figure to mutsig2_images.part000000000086/ITGA2.5_3666_10000_0.5878_0.1864_0.5928.png
                gene_name: ITGA2
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 27 percent done.
IPO13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.202549e-01	ci left: 2.731161e-02	ci right 3.416536e-02	k: 306	n:10000
Cons ci ratio: 9.491770e-02	ci left: 1.387411e-01	ci right 1.526660e-01	k: 1456	n:10000
KS ci ratio: 3.556745e-01	ci left: 9.867770e-03	ci right 1.422343e-02	k: 119	n:10000
IPO13   10000 perm   2 sec   (5121 perm/sec)   p_kst 1.190000e-02   p_cons 1.456000e-01   p_joint 3.060000e-02

Joint ci ratio: 2.483822e-01	ci left: 1.077173e-02	ci right 1.387247e-02	k: 245	n:20000
Cons ci ratio: 6.688983e-02	ci left: 1.416260e-01	ci right 1.514770e-01	k: 2930	n:20000
KS ci ratio: 2.547487e-01	ci left: 1.020918e-02	ci right 1.323527e-02	k: 233	n:20000
IPO13   20000 perm   4 sec   (4509 perm/sec)   p_kst 1.165000e-02   p_cons 1.465000e-01   p_joint 1.225000e-02

Joint ci ratio: 2.689088e-01	ci left: 6.087891e-03	ci right 8.009438e-03	k: 210	n:30000
Cons ci ratio: 5.497136e-02	ci left: 1.409347e-01	ci right 1.489342e-01	k: 4347	n:30000
KS ci ratio: 2.065198e-01	ci left: 1.064047e-02	ci right 1.312207e-02	k: 355	n:30000
IPO13   30000 perm   7 sec   (4320 perm/sec)   p_kst 1.183333e-02   p_cons 1.449000e-01   p_joint 7.000000e-03

Joint ci ratio: 1.391637e-01	ci left: 1.809497e-02	ci right 2.082543e-02	k: 777	n:40000
Cons ci ratio: 4.756036e-02	ci left: 1.417113e-01	ci right 1.486403e-01	k: 5806	n:40000
KS ci ratio: 1.756349e-01	ci left: 1.121896e-02	ci right 1.340270e-02	k: 491	n:40000
IPO13   40000 perm   10 sec   (4151 perm/sec)   p_kst 1.227500e-02   p_cons 1.451500e-01   p_joint 1.942500e-02

Joint ci ratio: 1.212379e-01	ci left: 1.923703e-02	ci right 2.173908e-02	k: 1023	n:50000
Cons ci ratio: 4.252137e-02	ci left: 1.421821e-01	ci right 1.483791e-01	k: 7263	n:50000
KS ci ratio: 1.560685e-01	ci left: 1.148686e-02	ci right 1.345035e-02	k: 622	n:50000
IPO13   50000 perm   12 sec   (4012 perm/sec)   p_kst 1.244000e-02   p_cons 1.452600e-01   p_joint 2.046000e-02

Joint ci ratio: 1.638435e-01	ci left: 8.675324e-03	ci right 1.023934e-02	k: 566	n:60000
Cons ci ratio: 3.879522e-02	ci left: 1.425883e-01	ci right 1.482460e-01	k: 8724	n:60000
KS ci ratio: 1.456194e-01	ci left: 1.106375e-02	ci right 1.281727e-02	k: 715	n:60000
IPO13   60000 perm   15 sec   (3921 perm/sec)   p_kst 1.191667e-02   p_cons 1.454000e-01   p_joint 9.433333e-03

Joint ci ratio: 1.731169e-01	ci left: 6.641711e-03	ci right 7.913932e-03	k: 508	n:70000
Cons ci ratio: 3.601511e-02	ci left: 1.421299e-01	ci right 1.473568e-01	k: 10131	n:70000
KS ci ratio: 1.360872e-01	ci left: 1.091655e-02	ci right 1.252430e-02	k: 819	n:70000
IPO13   70000 perm   18 sec   (3841 perm/sec)   p_kst 1.170000e-02   p_cons 1.447286e-01   p_joint 7.257143e-03

Joint ci ratio: 2.022228e-01	ci left: 4.202227e-03	ci right 5.159238e-03	k: 373	n:80000
Cons ci ratio: 3.376314e-02	ci left: 1.417600e-01	ci right 1.466408e-01	k: 11535	n:80000
KS ci ratio: 1.266259e-01	ci left: 1.108743e-02	ci right 1.259829e-02	k: 946	n:80000
IPO13   80000 perm   21 sec   (3785 perm/sec)   p_kst 1.182500e-02   p_cons 1.441875e-01   p_joint 4.662500e-03

Joint ci ratio: 1.528431e-01	ci left: 6.700766e-03	ci right 7.820235e-03	k: 652	n:90000
Cons ci ratio: 3.185228e-02	ci left: 1.417453e-01	ci right 1.463443e-01	k: 12963	n:90000
KS ci ratio: 1.192356e-01	ci left: 1.115864e-02	ci right 1.258419e-02	k: 1067	n:90000
IPO13   90000 perm   24 sec   (3712 perm/sec)   p_kst 1.185556e-02   p_cons 1.440333e-01   p_joint 7.244444e-03

Joint ci ratio: 1.437630e-01	ci left: 6.849206e-03	ci right 7.919665e-03	k: 737	n:100000
Cons ci ratio: 3.020359e-02	ci left: 1.419784e-01	ci right 1.463423e-01	k: 14415	n:100000
KS ci ratio: 1.127170e-01	ci left: 1.127599e-02	ci right 1.263254e-02	k: 1194	n:100000
IPO13   100000 perm   27 sec   (3650 perm/sec)   p_kst 1.194000e-02   p_cons 1.441500e-01   p_joint 7.370000e-03

Joint ci ratio: 1.364644e-01	ci left: 6.937134e-03	ci right 7.961820e-03	k: 818	n:110000
Cons ci ratio: 2.871827e-02	ci left: 1.427614e-01	ci right 1.469300e-01	k: 15932	n:110000
KS ci ratio: 1.072858e-01	ci left: 1.134719e-02	ci right 1.264237e-02	k: 1318	n:110000
IPO13   110000 perm   31 sec   (3582 perm/sec)   p_kst 1.198182e-02   p_cons 1.448364e-01   p_joint 7.436364e-03

Joint ci ratio: 9.637198e-02	ci left: 1.294415e-02	ci right 1.426284e-02	k: 1631	n:120000
Cons ci ratio: 2.744808e-02	ci left: 1.432774e-01	ci right 1.472731e-01	k: 17432	n:120000
KS ci ratio: 1.023557e-01	ci left: 1.145656e-02	ci right 1.270052e-02	k: 1448	n:120000
IPO13   120000 perm   34 sec   (3517 perm/sec)   p_kst 1.206667e-02   p_cons 1.452667e-01   p_joint 1.359167e-02

Joint ci ratio: 9.660309e-02	ci left: 1.190310e-02	ci right 1.311879e-02	k: 1625	n:130000
Cons ci ratio: 2.633763e-02	ci left: 1.436715e-01	ci right 1.475136e-01	k: 18926	n:130000
KS ci ratio: 9.833230e-02	ci left: 1.148271e-02	ci right 1.267767e-02	k: 1569	n:130000
IPO13   130000 perm   38 sec   (3464 perm/sec)   p_kst 1.206923e-02   p_cons 1.455846e-01   p_joint 1.250000e-02

Outputting figure to mutsig2_images.part000000000086/IPO13.4_2972_130000_0.012069_0.14558_0.0125.png
                gene_name: IPO13
               theta_stop: 0.098 
                    nperm: 130000 
                     p_ks: 0.012 
        ci_ks_bounds_left: 0.011 
       ci_ks_bounds_right: 0.013 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.013 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.013 

Current progress: 29 percent done.
IPO9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.330361e-02	ci left: 4.405144e-01	ci right 4.601146e-01	k: 4503	n:10000
Cons ci ratio: 6.339508e-03	ci left: 9.713246e-01	ci right 9.775949e-01	k: 9746	n:10000
KS ci ratio: 4.394775e-02	ci left: 4.332319e-01	ci right 4.528014e-01	k: 4430	n:10000
IPO9   10000 perm   2 sec   (5056 perm/sec)   p_kst 4.430000e-01   p_cons 9.746000e-01   p_joint 4.503000e-01

Outputting figure to mutsig2_images.part000000000086/IPO9.4_3222_10000_0.443_0.9746_0.4503.png
                gene_name: IPO9
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 30 percent done.
IQCB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.426881e-02	ci left: 7.140138e-01	ci right 7.316562e-01	k: 7229	n:10000
Cons ci ratio: 1.898640e-02	ci left: 8.021712e-01	ci right 8.176478e-01	k: 8100	n:10000
KS ci ratio: 3.923333e-02	ci left: 4.896515e-01	ci right 5.093488e-01	k: 4995	n:10000
IQCB1   10000 perm   2 sec   (5307 perm/sec)   p_kst 4.995000e-01   p_cons 8.100000e-01   p_joint 7.229000e-01

Outputting figure to mutsig2_images.part000000000086/IQCB1.4_1849_10000_0.4995_0.81_0.7229.png
                gene_name: IQCB1
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 32 percent done.
IQCE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.432872e-02	ci left: 5.561176e-01	ci right 5.756439e-01	k: 5659	n:10000
KS ci ratio: 2.983253e-02	ci left: 6.236666e-01	ci right 6.426558e-01	k: 6332	n:10000
IQCE   10000 perm   2 sec   (5852 perm/sec)   p_kst 6.332000e-01   p_cons 5.659000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000086/IQCE.4_2176_10000_0.6332_0.5659_1.png
                gene_name: IQCE
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 34 percent done.
IRAK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.841699e-02	ci left: 8.115144e-01	ci right 8.266992e-01	k: 8192	n:10000
KS ci ratio: 4.567292e-03	ci left: 9.842574e-01	ci right 9.888526e-01	k: 9867	n:10000
IRAK3   10000 perm   2 sec   (5589 perm/sec)   p_kst 9.867000e-01   p_cons 8.192000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000086/IRAK3.4_1839_10000_0.9867_0.8192_1.png
                gene_name: IRAK3
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 36 percent done.
IRF8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.525351e-02	ci left: 4.188726e-01	ci right 4.383690e-01	k: 4286	n:10000
Cons ci ratio: 5.959290e-03	ci left: 9.744004e-01	ci right 9.803170e-01	k: 9775	n:10000
KS ci ratio: 1.014049e-01	ci left: 1.233692e-01	ci right 1.366472e-01	k: 1299	n:10000
IRF8   10000 perm   2 sec   (6305 perm/sec)   p_kst 1.299000e-01   p_cons 9.775000e-01   p_joint 4.286000e-01

Joint ci ratio: 4.403315e-02	ci left: 2.775089e-01	ci right 2.900540e-01	k: 5675	n:20000
Cons ci ratio: 4.275984e-03	ci left: 9.746181e-01	ci right 9.788418e-01	k: 19536	n:20000
KS ci ratio: 7.104720e-02	ci left: 1.273868e-01	ci right 1.368204e-01	k: 2641	n:20000
IRF8   20000 perm   4 sec   (5452 perm/sec)   p_kst 1.320500e-01   p_cons 9.768000e-01   p_joint 2.837500e-01

Outputting figure to mutsig2_images.part000000000086/IRF8.4_1313_20000_0.13205_0.9768_0.28375.png
                gene_name: IRF8
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 38 percent done.
IRGC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.356197e-02	ci left: 3.393548e-01	ci right 3.581334e-01	k: 3487	n:10000
Cons ci ratio: 2.220336e-02	ci left: 7.485708e-01	ci right 7.654792e-01	k: 7571	n:10000
KS ci ratio: 1.097680e-01	ci left: 1.068582e-01	ci right 1.193681e-01	k: 1130	n:10000
IRGC   10000 perm   2 sec   (5447 perm/sec)   p_kst 1.130000e-01   p_cons 7.571000e-01   p_joint 3.487000e-01

Joint ci ratio: 5.862550e-02	ci left: 1.773166e-01	ci right 1.880758e-01	k: 3653	n:20000
Cons ci ratio: 1.496738e-02	ci left: 7.683912e-01	ci right 7.800289e-01	k: 15485	n:20000
KS ci ratio: 8.007495e-02	ci left: 1.026992e-01	ci right 1.113154e-01	k: 2139	n:20000
IRGC   20000 perm   4 sec   (4787 perm/sec)   p_kst 1.069500e-01   p_cons 7.742500e-01   p_joint 1.826500e-01

Outputting figure to mutsig2_images.part000000000086/IRGC.4_1396_20000_0.10695_0.77425_0.18265.png
                gene_name: IRGC
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 39 percent done.
ITFG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.385874e-03	ci left: 9.620496e-01	ci right 9.692759e-01	k: 9658	n:10000
KS ci ratio: 2.357332e-02	ci left: 7.256263e-01	ci right 7.430370e-01	k: 7344	n:10000
ITFG2   10000 perm   2 sec   (5577 perm/sec)   p_kst 7.344000e-01   p_cons 9.658000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000086/ITFG2.4_1392_10000_0.7344_0.9658_1.png
                gene_name: ITFG2
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 41 percent done.
ITGA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.971484e-02	ci left: 4.835542e-01	ci right 5.032497e-01	k: 4934	n:10000
KS ci ratio: 1.145409e-02	ci left: 9.159518e-01	ci right 9.266012e-01	k: 9214	n:10000
ITGA1   10000 perm   2 sec   (4438 perm/sec)   p_kst 9.214000e-01   p_cons 4.934000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000086/ITGA1.4_3656_10000_0.9214_0.4934_1.png
                gene_name: ITGA1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 43 percent done.
IPO8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.651309e-02	ci left: 6.769010e-01	ci right 6.951905e-01	k: 6861	n:10000
KS ci ratio: 1.829882e-02	ci left: 8.134449e-01	ci right 8.285676e-01	k: 8211	n:10000
IPO8   10000 perm   2 sec   (4828 perm/sec)   p_kst 8.211000e-01   p_cons 6.861000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000086/IPO8.3_3214_10000_0.8211_0.6861_1.png
                gene_name: IPO8
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 45 percent done.
IQCH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.020487e-02	ci left: 9.316454e-01	ci right 9.412984e-01	k: 9366	n:10000
KS ci ratio: 8.215927e-03	ci left: 9.538829e-01	ci right 9.618476e-01	k: 9580	n:10000
IQCH   10000 perm   2 sec   (4895 perm/sec)   p_kst 9.580000e-01   p_cons 9.366000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000086/IQCH.3_3296_10000_0.958_0.9366_1.png
                gene_name: IQCH
               theta_stop: 0.010 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 46 percent done.
IQCJ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.521756e-02	ci left: 3.257483e-01	ci right 3.443479e-01	k: 3350	n:10000
Cons ci ratio: 5.290849e-03	ci left: 9.794135e-01	ci right 9.847004e-01	k: 9822	n:10000
KS ci ratio: 9.055796e-02	ci left: 1.506072e-01	ci right 1.649928e-01	k: 1577	n:10000
IQCJ   10000 perm   2 sec   (6352 perm/sec)   p_kst 1.577000e-01   p_cons 9.822000e-01   p_joint 3.350000e-01

Outputting figure to mutsig2_images.part000000000086/IQCJ.3_548_10000_0.1577_0.9822_0.335.png
                gene_name: IQCJ
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 48 percent done.
IQSEC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.560388e-02	ci left: 3.226707e-01	ci right 3.412273e-01	k: 3319	n:10000
Cons ci ratio: 4.492253e-02	ci left: 4.224616e-01	ci right 4.419779e-01	k: 4322	n:10000
KS ci ratio: 7.254263e-02	ci left: 2.177347e-01	ci right 2.342252e-01	k: 2259	n:10000
IQSEC2   10000 perm   2 sec   (4154 perm/sec)   p_kst 2.259000e-01   p_cons 4.322000e-01   p_joint 3.319000e-01

Outputting figure to mutsig2_images.part000000000086/IQSEC2.3_4657_10000_0.2259_0.4322_0.3319.png
                gene_name: IQSEC2
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 50 percent done.
IRAK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.948389e-01	ci left: 3.509982e-02	ci right 4.277176e-02	k: 388	n:10000
Cons ci ratio: 3.811947e-02	ci left: 5.040511e-01	ci right 5.237408e-01	k: 5139	n:10000
KS ci ratio: 3.289572e-01	ci left: 1.169777e-02	ci right 1.639161e-02	k: 139	n:10000
IRAK1   10000 perm   2 sec   (5180 perm/sec)   p_kst 1.390000e-02   p_cons 5.139000e-01   p_joint 3.880000e-02

Joint ci ratio: 1.097109e-01	ci left: 5.669910e-02	ci right 6.332954e-02	k: 1199	n:20000
Cons ci ratio: 2.619514e-02	ci left: 5.212528e-01	ci right 5.351390e-01	k: 10564	n:20000
KS ci ratio: 2.238557e-01	ci left: 1.340842e-02	ci right 1.683467e-02	k: 301	n:20000
IRAK1   20000 perm   4 sec   (4628 perm/sec)   p_kst 1.505000e-02   p_cons 5.282000e-01   p_joint 5.995000e-02

Joint ci ratio: 8.289592e-02	ci left: 6.648402e-02	ci right 7.226638e-02	k: 2080	n:30000
Cons ci ratio: 2.137015e-02	ci left: 5.229655e-01	ci right 5.342956e-01	k: 15859	n:30000
KS ci ratio: 1.908535e-01	ci left: 1.254223e-02	ci right 1.521980e-02	k: 415	n:30000
IRAK1   30000 perm   7 sec   (4397 perm/sec)   p_kst 1.383333e-02   p_cons 5.286333e-01   p_joint 6.933333e-02

Joint ci ratio: 6.733920e-02	ci left: 7.546401e-02	ci right 8.074744e-02	k: 3123	n:40000
Cons ci ratio: 1.843718e-02	ci left: 5.256197e-01	ci right 5.354259e-01	k: 21221	n:40000
KS ci ratio: 1.659942e-01	ci left: 1.260773e-02	ci right 1.491366e-02	k: 549	n:40000
IRAK1   40000 perm   9 sec   (4221 perm/sec)   p_kst 1.372500e-02   p_cons 5.305250e-01   p_joint 7.807500e-02

Joint ci ratio: 6.825765e-02	ci left: 5.976393e-02	ci right 6.400711e-02	k: 3093	n:50000
Cons ci ratio: 1.650093e-02	ci left: 5.258338e-01	ci right 5.346027e-01	k: 26511	n:50000
KS ci ratio: 1.501962e-01	ci left: 1.242976e-02	ci right 1.446731e-02	k: 671	n:50000
IRAK1   50000 perm   12 sec   (4125 perm/sec)   p_kst 1.342000e-02   p_cons 5.302200e-01   p_joint 6.186000e-02

Joint ci ratio: 6.689441e-02	ci left: 5.231961e-02	ci right 5.595700e-02	k: 3247	n:60000
Cons ci ratio: 1.506137e-02	ci left: 5.262802e-01	ci right 5.342835e-01	k: 31817	n:60000
KS ci ratio: 1.373172e-01	ci left: 1.247914e-02	ci right 1.433503e-02	k: 803	n:60000
IRAK1   60000 perm   15 sec   (4038 perm/sec)   p_kst 1.338333e-02   p_cons 5.302833e-01   p_joint 5.411667e-02

Joint ci ratio: 6.127119e-02	ci left: 5.354772e-02	ci right 5.694641e-02	k: 3866	n:70000
Cons ci ratio: 1.388622e-02	ci left: 5.286525e-01	ci right 5.360591e-01	k: 37265	n:70000
KS ci ratio: 1.267210e-01	ci left: 1.263049e-02	ci right 1.435304e-02	k: 943	n:70000
IRAK1   70000 perm   18 sec   (3929 perm/sec)   p_kst 1.347143e-02   p_cons 5.323571e-01   p_joint 5.522857e-02

Joint ci ratio: 5.468085e-02	ci left: 5.870956e-02	ci right 6.202241e-02	k: 4828	n:80000
Cons ci ratio: 1.298470e-02	ci left: 5.290727e-01	ci right 5.359999e-01	k: 42603	n:80000
KS ci ratio: 1.190895e-01	ci left: 1.256615e-02	ci right 1.416943e-02	k: 1068	n:80000
IRAK1   80000 perm   21 sec   (3865 perm/sec)   p_kst 1.335000e-02   p_cons 5.325375e-01   p_joint 6.035000e-02

Joint ci ratio: 5.138085e-02	ci left: 5.918156e-02	ci right 6.231349e-02	k: 5466	n:90000
Cons ci ratio: 1.225178e-02	ci left: 5.288780e-01	ci right 5.354088e-01	k: 47893	n:90000
KS ci ratio: 1.124031e-01	ci left: 1.258335e-02	ci right 1.409271e-02	k: 1199	n:90000
IRAK1   90000 perm   24 sec   (3799 perm/sec)   p_kst 1.332222e-02   p_cons 5.321444e-01   p_joint 6.073333e-02

Joint ci ratio: 4.424555e-02	ci left: 7.116744e-02	ci right 7.439740e-02	k: 7277	n:100000
Cons ci ratio: 1.163790e-02	ci left: 5.284113e-01	ci right 5.346069e-01	k: 53151	n:100000
KS ci ratio: 1.068111e-01	ci left: 1.257966e-02	ci right 1.400878e-02	k: 1328	n:100000
IRAK1   100000 perm   27 sec   (3737 perm/sec)   p_kst 1.328000e-02   p_cons 5.315100e-01   p_joint 7.277000e-02

Joint ci ratio: 4.783136e-02	ci left: 5.616738e-02	ci right 5.892873e-02	k: 6329	n:110000
Cons ci ratio: 1.108702e-02	ci left: 5.289732e-01	ci right 5.348797e-01	k: 58512	n:110000
KS ci ratio: 1.013114e-01	ci left: 1.274656e-02	ci right 1.411564e-02	k: 1476	n:110000
IRAK1   110000 perm   30 sec   (3670 perm/sec)   p_kst 1.341818e-02   p_cons 5.319273e-01   p_joint 5.753636e-02

Joint ci ratio: 5.086098e-02	ci left: 4.596577e-02	ci right 4.837284e-02	k: 5659	n:120000
Cons ci ratio: 1.060886e-02	ci left: 5.293887e-01	ci right 5.350431e-01	k: 63866	n:120000
KS ci ratio: 9.691524e-02	ci left: 1.279773e-02	ci right 1.410927e-02	k: 1613	n:120000
IRAK1   120000 perm   33 sec   (3608 perm/sec)   p_kst 1.344167e-02   p_cons 5.322167e-01   p_joint 4.715833e-02

Outputting figure to mutsig2_images.part000000000086/IRAK1.3_2195_120000_0.013442_0.53222_0.047158.png
                gene_name: IRAK1
               theta_stop: 0.097 
                    nperm: 120000 
                     p_ks: 0.013 
        ci_ks_bounds_left: 0.013 
       ci_ks_bounds_right: 0.014 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.047 
     ci_joint_bounds_left: 0.046 
    ci_joint_bounds_right: 0.048 

Current progress: 52 percent done.
IRF2BP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.584068e-02	ci left: 2.530063e-01	ci right 2.703328e-01	k: 2616	n:10000
Cons ci ratio: 2.236599e-01	ci left: 2.646035e-02	ci right 3.321723e-02	k: 297	n:10000
KS ci ratio: 8.211153e-02	ci left: 1.779240e-01	ci right 1.932596e-01	k: 1855	n:10000
IRF2BP2   10000 perm   2 sec   (5636 perm/sec)   p_kst 1.855000e-01   p_cons 2.970000e-02   p_joint 2.616000e-01

Joint ci ratio: 7.723471e-02	ci left: 1.096759e-01	ci right 1.185366e-01	k: 2281	n:20000
Cons ci ratio: 1.608167e-01	ci left: 2.652586e-02	ci right 3.121245e-02	k: 576	n:20000
KS ci ratio: 5.844943e-02	ci left: 1.782062e-01	ci right 1.889859e-01	k: 3671	n:20000
IRF2BP2   20000 perm   4 sec   (4901 perm/sec)   p_kst 1.835500e-01   p_cons 2.880000e-02   p_joint 1.140500e-01

Joint ci ratio: 5.020338e-02	ci left: 1.646429e-01	ci right 1.731546e-01	k: 5066	n:30000
Cons ci ratio: 1.339189e-01	ci left: 2.590436e-02	ci right 2.965451e-02	k: 832	n:30000
KS ci ratio: 4.763396e-02	ci left: 1.797615e-01	ci right 1.885665e-01	k: 5524	n:30000
IRF2BP2   30000 perm   6 sec   (4668 perm/sec)   p_kst 1.841333e-01   p_cons 2.773333e-02   p_joint 1.688667e-01

Joint ci ratio: 4.584184e-02	ci left: 1.509955e-01	ci right 1.581047e-01	k: 6181	n:40000
Cons ci ratio: 1.159061e-01	ci left: 2.618647e-02	ci right 2.943257e-02	k: 1111	n:40000
KS ci ratio: 4.060062e-02	ci left: 1.851487e-01	ci right 1.928465e-01	k: 7559	n:40000
IRF2BP2   40000 perm   9 sec   (4514 perm/sec)   p_kst 1.889750e-01   p_cons 2.777500e-02   p_joint 1.545250e-01

Joint ci ratio: 4.503291e-02	ci left: 1.286285e-01	ci right 1.345743e-01	k: 6579	n:50000
Cons ci ratio: 1.041720e-01	ci left: 2.610355e-02	ci right 2.899165e-02	k: 1376	n:50000
KS ci ratio: 3.627885e-02	ci left: 1.858545e-01	ci right 1.927416e-01	k: 9464	n:50000
IRF2BP2   50000 perm   11 sec   (4383 perm/sec)   p_kst 1.892800e-01   p_cons 2.752000e-02   p_joint 1.315800e-01

Joint ci ratio: 4.039355e-02	ci left: 1.329195e-01	ci right 1.384158e-01	k: 8139	n:60000
Cons ci ratio: 9.504840e-02	ci left: 2.625487e-02	ci right 2.889109e-02	k: 1653	n:60000
KS ci ratio: 3.318643e-02	ci left: 1.855263e-01	ci right 1.918038e-01	k: 11319	n:60000
IRF2BP2   60000 perm   14 sec   (4257 perm/sec)   p_kst 1.886500e-01   p_cons 2.755000e-02   p_joint 1.356500e-01

Outputting figure to mutsig2_images.part000000000086/IRF2BP2.3_1772_60000_0.18865_0.02755_0.13565.png
                gene_name: IRF2BP2
               theta_stop: 0.095 
                    nperm: 60000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.028 
      ci_cons_bounds_left: 0.026 
     ci_cons_bounds_right: 0.029 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 54 percent done.
IRGQ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.279128e-02	ci left: 4.464018e-01	ci right 4.660237e-01	k: 4562	n:10000
Cons ci ratio: 9.028594e-03	ci left: 9.452335e-01	ci right 9.539023e-01	k: 9497	n:10000
KS ci ratio: 8.358022e-02	ci left: 1.727107e-01	ci right 1.878760e-01	k: 1802	n:10000
IRGQ   10000 perm   2 sec   (5206 perm/sec)   p_kst 1.802000e-01   p_cons 9.497000e-01   p_joint 4.562000e-01

Outputting figure to mutsig2_images.part000000000086/IRGQ.3_1880_10000_0.1802_0.9497_0.4562.png
                gene_name: IRGQ
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 55 percent done.
IRX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.391704e-01	ci left: 6.836336e-02	ci right 7.868673e-02	k: 734	n:10000
Cons ci ratio: 7.507969e-02	ci left: 2.060944e-01	ci right 2.222724e-01	k: 2141	n:10000
KS ci ratio: 1.090626e-01	ci left: 1.081269e-01	ci right 1.206987e-01	k: 1143	n:10000
IRX2   10000 perm   2 sec   (5977 perm/sec)   p_kst 1.143000e-01   p_cons 2.141000e-01   p_joint 7.340000e-02

Joint ci ratio: 5.216141e-02	ci left: 2.144235e-01	ci right 2.259579e-01	k: 4403	n:20000
Cons ci ratio: 5.482889e-02	ci left: 1.979387e-01	ci right 2.091476e-01	k: 4070	n:20000
KS ci ratio: 7.662953e-02	ci left: 1.112489e-01	ci right 1.201632e-01	k: 2313	n:20000
IRX2   20000 perm   4 sec   (5205 perm/sec)   p_kst 1.156500e-01   p_cons 2.035000e-01   p_joint 2.201500e-01

Outputting figure to mutsig2_images.part000000000086/IRX2.3_1432_20000_0.11565_0.2035_0.22015.png
                gene_name: IRX2
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 57 percent done.
IRX6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.315853e-02	ci left: 1.741859e-01	ci right 1.893999e-01	k: 1817	n:10000
Cons ci ratio: 1.236641e-01	ci left: 8.562704e-02	ci right 9.701233e-02	k: 912	n:10000
KS ci ratio: 1.009590e-01	ci left: 1.243474e-01	ci right 1.376684e-01	k: 1309	n:10000
IRX6   10000 perm   2 sec   (5745 perm/sec)   p_kst 1.309000e-01   p_cons 9.120000e-02   p_joint 1.817000e-01

Joint ci ratio: 8.741912e-02	ci left: 8.734272e-02	ci right 9.537654e-02	k: 1826	n:20000
Cons ci ratio: 8.303886e-02	ci left: 9.607192e-02	ci right 1.044447e-01	k: 2004	n:20000
KS ci ratio: 7.368931e-02	ci left: 1.193638e-01	ci right 1.285458e-01	k: 2478	n:20000
IRX6   20000 perm   4 sec   (4969 perm/sec)   p_kst 1.239000e-01   p_cons 1.002000e-01   p_joint 9.130000e-02

Outputting figure to mutsig2_images.part000000000086/IRX6.3_1365_20000_0.1239_0.1002_0.0913.png
                gene_name: IRX6
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.096 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.091 
     ci_joint_bounds_left: 0.087 
    ci_joint_bounds_right: 0.095 

Current progress: 59 percent done.
ISG20L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.111580e-01	ci left: 1.044194e-01	ci right 1.168085e-01	k: 1105	n:10000
Cons ci ratio: 1.907924e-01	ci left: 3.662531e-02	ci right 4.444524e-02	k: 404	n:10000
KS ci ratio: 2.073636e-01	ci left: 3.091404e-02	ci right 3.816041e-02	k: 344	n:10000
ISG20L2   10000 perm   2 sec   (5904 perm/sec)   p_kst 3.440000e-02   p_cons 4.040000e-02   p_joint 1.105000e-01

Joint ci ratio: 1.150043e-01	ci left: 5.173437e-02	ci right 5.809581e-02	k: 1097	n:20000
Cons ci ratio: 1.319696e-01	ci left: 3.945544e-02	ci right 4.507862e-02	k: 844	n:20000
KS ci ratio: 1.455428e-01	ci left: 3.244754e-02	ci right 3.758880e-02	k: 699	n:20000
ISG20L2   20000 perm   4 sec   (5068 perm/sec)   p_kst 3.495000e-02   p_cons 4.220000e-02   p_joint 5.485000e-02

Joint ci ratio: 1.003514e-01	ci left: 4.596613e-02	ci right 5.085513e-02	k: 1451	n:30000
Cons ci ratio: 1.073782e-01	ci left: 4.024502e-02	ci right 4.484410e-02	k: 1275	n:30000
KS ci ratio: 1.211261e-01	ci left: 3.168658e-02	ci right 3.580436e-02	k: 1011	n:30000
ISG20L2   30000 perm   6 sec   (4824 perm/sec)   p_kst 3.370000e-02   p_cons 4.250000e-02   p_joint 4.836667e-02

Joint ci ratio: 1.113534e-01	ci left: 2.837429e-02	ci right 3.174439e-02	k: 1201	n:40000
Cons ci ratio: 8.995183e-02	ci left: 4.328259e-02	ci right 4.738375e-02	k: 1812	n:40000
KS ci ratio: 1.043134e-01	ci left: 3.231849e-02	ci right 3.589956e-02	k: 1363	n:40000
ISG20L2   40000 perm   9 sec   (4651 perm/sec)   p_kst 3.407500e-02   p_cons 4.530000e-02   p_joint 3.002500e-02

Joint ci ratio: 1.104798e-01	ci left: 2.320152e-02	ci right 2.593406e-02	k: 1227	n:50000
Cons ci ratio: 8.025637e-02	ci left: 4.370939e-02	ci right 4.738360e-02	k: 2276	n:50000
KS ci ratio: 9.471923e-02	ci left: 3.154908e-02	ci right 3.470543e-02	k: 1655	n:50000
ISG20L2   50000 perm   11 sec   (4562 perm/sec)   p_kst 3.310000e-02   p_cons 4.552000e-02   p_joint 2.454000e-02

Joint ci ratio: 1.010510e-01	ci left: 2.322894e-02	ci right 2.571735e-02	k: 1467	n:60000
Cons ci ratio: 7.339618e-02	ci left: 4.371518e-02	ci right 4.706230e-02	k: 2722	n:60000
KS ci ratio: 8.692454e-02	ci left: 3.135650e-02	ci right 3.422226e-02	k: 1966	n:60000
ISG20L2   60000 perm   13 sec   (4452 perm/sec)   p_kst 3.276667e-02   p_cons 4.536667e-02   p_joint 2.445000e-02

Joint ci ratio: 1.238277e-01	ci left: 1.323962e-02	ci right 1.500100e-02	k: 987	n:70000
Cons ci ratio: 6.818627e-02	ci left: 4.354631e-02	ci right 4.663440e-02	k: 3155	n:70000
KS ci ratio: 8.107819e-02	ci left: 3.100258e-02	ci right 3.363638e-02	k: 2261	n:70000
ISG20L2   70000 perm   16 sec   (4346 perm/sec)   p_kst 3.230000e-02   p_cons 4.507143e-02   p_joint 1.410000e-02

Joint ci ratio: 1.126421e-01	ci left: 1.407185e-02	ci right 1.576360e-02	k: 1192	n:80000
Cons ci ratio: 6.345939e-02	ci left: 4.407847e-02	ci right 4.697961e-02	k: 3641	n:80000
KS ci ratio: 7.545269e-02	ci left: 3.140467e-02	ci right 3.387937e-02	k: 2610	n:80000
ISG20L2   80000 perm   19 sec   (4267 perm/sec)   p_kst 3.262500e-02   p_cons 4.551250e-02   p_joint 1.490000e-02

Joint ci ratio: 1.110967e-01	ci left: 1.288587e-02	ci right 1.441238e-02	k: 1227	n:90000
Cons ci ratio: 5.994710e-02	ci left: 4.399427e-02	ci right 4.672402e-02	k: 4081	n:90000
KS ci ratio: 7.138124e-02	ci left: 3.126368e-02	ci right 3.358880e-02	k: 2917	n:90000
ISG20L2   90000 perm   21 sec   (4191 perm/sec)   p_kst 3.241111e-02   p_cons 4.534444e-02   p_joint 1.363333e-02

Joint ci ratio: 1.025180e-01	ci left: 1.367073e-02	ci right 1.515763e-02	k: 1440	n:100000
Cons ci ratio: 5.682201e-02	ci left: 4.413764e-02	ci right 4.672881e-02	k: 4542	n:100000
KS ci ratio: 6.773142e-02	ci left: 3.131117e-02	ci right 3.351606e-02	k: 3240	n:100000
ISG20L2   100000 perm   24 sec   (4115 perm/sec)   p_kst 3.240000e-02   p_cons 4.542000e-02   p_joint 1.440000e-02

Joint ci ratio: 1.003516e-01	ci left: 1.299476e-02	ci right 1.437651e-02	k: 1504	n:110000
Cons ci ratio: 5.419644e-02	ci left: 4.416824e-02	ci right 4.663762e-02	k: 4993	n:110000
KS ci ratio: 6.480613e-02	ci left: 3.114669e-02	ci right 3.324170e-02	k: 3540	n:110000
ISG20L2   110000 perm   27 sec   (4047 perm/sec)   p_kst 3.218182e-02   p_cons 4.539091e-02   p_joint 1.367273e-02

Joint ci ratio: 8.736529e-02	ci left: 1.577863e-02	ci right 1.722821e-02	k: 1979	n:120000
Cons ci ratio: 5.183436e-02	ci left: 4.431127e-02	ci right 4.667743e-02	k: 5458	n:120000
KS ci ratio: 6.202983e-02	ci left: 3.120835e-02	ci right 3.321434e-02	k: 3864	n:120000
ISG20L2   120000 perm   30 sec   (3958 perm/sec)   p_kst 3.220000e-02   p_cons 4.548333e-02   p_joint 1.649167e-02

Outputting figure to mutsig2_images.part000000000086/ISG20L2.3_1074_120000_0.0322_0.045483_0.016492.png
                gene_name: ISG20L2
               theta_stop: 0.087 
                    nperm: 120000 
                     p_ks: 0.032 
        ci_ks_bounds_left: 0.031 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.045 
      ci_cons_bounds_left: 0.044 
     ci_cons_bounds_right: 0.047 
                  p_joint: 0.016 
     ci_joint_bounds_left: 0.016 
    ci_joint_bounds_right: 0.017 

Current progress: 61 percent done.
ISM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.145810e-01	ci left: 1.943009e-03	ci right 4.162249e-03	k: 29	n:10000
Cons ci ratio: 4.310919e-01	ci left: 6.437624e-03	ci right 1.005764e-02	k: 81	n:10000
KS ci ratio: 1.487901e-01	ci left: 6.005239e-02	ci right 6.980294e-02	k: 648	n:10000
ISM2   10000 perm   2 sec   (5783 perm/sec)   p_kst 6.480000e-02   p_cons 8.100000e-03   p_joint 2.900000e-03

Joint ci ratio: 2.443899e-01	ci left: 1.114729e-02	ci right 1.429674e-02	k: 253	n:20000
Cons ci ratio: 3.440134e-01	ci left: 5.342070e-03	ci right 7.605013e-03	k: 128	n:20000
KS ci ratio: 1.080444e-01	ci left: 5.840428e-02	ci right 6.512383e-02	k: 1234	n:20000
ISM2   20000 perm   4 sec   (5027 perm/sec)   p_kst 6.170000e-02   p_cons 6.400000e-03   p_joint 1.265000e-02

Joint ci ratio: 1.752693e-01	ci left: 1.496121e-02	ci right 1.786686e-02	k: 491	n:30000
Cons ci ratio: 2.812540e-01	ci left: 5.529030e-03	ci right 7.368516e-03	k: 192	n:30000
KS ci ratio: 8.780254e-02	ci left: 5.955813e-02	ci right 6.506034e-02	k: 1868	n:30000
ISM2   30000 perm   6 sec   (4750 perm/sec)   p_kst 6.226667e-02   p_cons 6.400000e-03   p_joint 1.636667e-02

Joint ci ratio: 1.975245e-01	ci left: 8.786519e-03	ci right 1.073564e-02	k: 389	n:40000
Cons ci ratio: 2.491573e-01	ci left: 5.383925e-03	ci right 6.939080e-03	k: 245	n:40000
KS ci ratio: 7.625183e-02	ci left: 5.960697e-02	ci right 6.435686e-02	k: 2478	n:40000
ISM2   40000 perm   9 sec   (4598 perm/sec)   p_kst 6.195000e-02   p_cons 6.125000e-03   p_joint 9.725000e-03

Joint ci ratio: 2.008575e-01	ci left: 6.800464e-03	ci right 8.337538e-03	k: 377	n:50000
Cons ci ratio: 2.223087e-01	ci left: 5.492974e-03	ci right 6.885294e-03	k: 308	n:50000
KS ci ratio: 6.905819e-02	ci left: 5.844551e-02	ci right 6.264569e-02	k: 3026	n:50000
ISM2   50000 perm   11 sec   (4478 perm/sec)   p_kst 6.052000e-02   p_cons 6.160000e-03   p_joint 7.540000e-03

Joint ci ratio: 1.527999e-01	ci left: 1.002043e-02	ci right 1.169406e-02	k: 650	n:60000
Cons ci ratio: 2.048380e-01	ci left: 5.445169e-03	ci right 6.703327e-03	k: 363	n:60000
KS ci ratio: 6.325848e-02	ci left: 5.824408e-02	ci right 6.206527e-02	k: 3608	n:60000
ISM2   60000 perm   14 sec   (4342 perm/sec)   p_kst 6.013333e-02   p_cons 6.050000e-03   p_joint 1.083333e-02

Joint ci ratio: 1.518637e-01	ci left: 8.712152e-03	ci right 1.015752e-02	k: 659	n:70000
Cons ci ratio: 1.880169e-01	ci left: 5.591054e-03	ci right 6.764732e-03	k: 431	n:70000
KS ci ratio: 5.873318e-02	ci left: 5.806867e-02	ci right 6.159650e-02	k: 4187	n:70000
ISM2   70000 perm   16 sec   (4257 perm/sec)   p_kst 5.981429e-02   p_cons 6.157143e-03   p_joint 9.414286e-03

Joint ci ratio: 1.008439e-01	ci left: 1.760186e-02	ci right 1.948328e-02	k: 1482	n:80000
Cons ci ratio: 1.641850e-01	ci left: 6.493895e-03	ci right 7.667279e-03	k: 565	n:80000
KS ci ratio: 5.283613e-02	ci left: 6.267158e-02	ci right 6.608509e-02	k: 5149	n:80000
ISM2   80000 perm   19 sec   (4155 perm/sec)   p_kst 6.436250e-02   p_cons 7.062500e-03   p_joint 1.852500e-02

Joint ci ratio: 9.567359e-02	ci left: 1.743432e-02	ci right 1.919692e-02	k: 1647	n:90000
Cons ci ratio: 1.552563e-01	ci left: 6.487054e-03	ci right 7.589523e-03	k: 632	n:90000
KS ci ratio: 4.979949e-02	ci left: 6.280483e-02	ci right 6.602331e-02	k: 5796	n:90000
ISM2   90000 perm   22 sec   (4077 perm/sec)   p_kst 6.440000e-02   p_cons 7.022222e-03   p_joint 1.830000e-02

Joint ci ratio: 9.892269e-02	ci left: 1.469466e-02	ci right 1.623363e-02	k: 1545	n:100000
Cons ci ratio: 1.455622e-01	ci left: 6.675678e-03	ci right 7.733208e-03	k: 719	n:100000
KS ci ratio: 4.711163e-02	ci left: 6.322253e-02	ci right 6.628277e-02	k: 6474	n:100000
ISM2   100000 perm   25 sec   (3996 perm/sec)   p_kst 6.474000e-02   p_cons 7.190000e-03   p_joint 1.545000e-02

Joint ci ratio: 9.589487e-02	ci left: 1.424557e-02	ci right 1.568926e-02	k: 1645	n:110000
Cons ci ratio: 1.390537e-01	ci left: 6.673743e-03	ci right 7.679776e-03	k: 788	n:110000
KS ci ratio: 4.491751e-02	ci left: 6.329821e-02	ci right 6.621570e-02	k: 7122	n:110000
ISM2   110000 perm   28 sec   (3913 perm/sec)   p_kst 6.474545e-02   p_cons 7.163636e-03   p_joint 1.495455e-02

Joint ci ratio: 8.326858e-02	ci left: 1.737771e-02	ci right 1.889571e-02	k: 2175	n:120000
Cons ci ratio: 1.330348e-01	ci left: 6.705239e-03	ci right 7.668808e-03	k: 861	n:120000
KS ci ratio: 4.302464e-02	ci left: 6.330629e-02	ci right 6.609813e-02	k: 7763	n:120000
ISM2   120000 perm   31 sec   (3837 perm/sec)   p_kst 6.469167e-02   p_cons 7.175000e-03   p_joint 1.812500e-02

Joint ci ratio: 7.788077e-02	ci left: 1.837038e-02	ci right 1.986656e-02	k: 2484	n:130000
Cons ci ratio: 1.278732e-01	ci left: 6.717787e-03	ci right 7.642862e-03	k: 932	n:130000
KS ci ratio: 4.127906e-02	ci left: 6.352863e-02	ci right 6.621389e-02	k: 8432	n:130000
ISM2   130000 perm   34 sec   (3771 perm/sec)   p_kst 6.486154e-02   p_cons 7.169231e-03   p_joint 1.910769e-02

Joint ci ratio: 7.845079e-02	ci left: 1.683358e-02	ci right 1.821507e-02	k: 2452	n:140000
Cons ci ratio: 1.238922e-01	ci left: 6.659928e-03	ci right 7.546386e-03	k: 993	n:140000
KS ci ratio: 3.977444e-02	ci left: 6.358671e-02	ci right 6.617420e-02	k: 9082	n:140000
ISM2   140000 perm   38 sec   (3708 perm/sec)   p_kst 6.487143e-02   p_cons 7.092857e-03   p_joint 1.751429e-02

Joint ci ratio: 8.274956e-02	ci left: 1.412967e-02	ci right 1.535585e-02	k: 2210	n:150000
Cons ci ratio: 1.196347e-01	ci left: 6.681318e-03	ci right 7.537900e-03	k: 1065	n:150000
KS ci ratio: 3.840422e-02	ci left: 6.369805e-02	ci right 6.619880e-02	k: 9741	n:150000
ISM2   150000 perm   41 sec   (3642 perm/sec)   p_kst 6.494000e-02   p_cons 7.100000e-03   p_joint 1.473333e-02

Joint ci ratio: 7.773748e-02	ci left: 1.503524e-02	ci right 1.625740e-02	k: 2502	n:160000
Cons ci ratio: 1.160451e-01	ci left: 6.670141e-03	ci right 7.497871e-03	k: 1132	n:160000
KS ci ratio: 3.716077e-02	ci left: 6.381540e-02	ci right 6.623789e-02	k: 10403	n:160000
ISM2   160000 perm   45 sec   (3582 perm/sec)   p_kst 6.501875e-02   p_cons 7.075000e-03   p_joint 1.563750e-02

Joint ci ratio: 7.821906e-02	ci left: 1.398902e-02	ci right 1.513350e-02	k: 2474	n:170000
Cons ci ratio: 1.127602e-01	ci left: 6.660618e-03	ci right 7.462213e-03	k: 1199	n:170000
KS ci ratio: 3.605169e-02	ci left: 6.385009e-02	ci right 6.620006e-02	k: 11053	n:170000
ISM2   170000 perm   48 sec   (3530 perm/sec)   p_kst 6.501765e-02   p_cons 7.052941e-03   p_joint 1.455294e-02

Joint ci ratio: 8.331170e-02	ci left: 1.164354e-02	ci right 1.266115e-02	k: 2186	n:180000
Cons ci ratio: 1.096523e-01	ci left: 6.663256e-03	ci right 7.441637e-03	k: 1268	n:180000
KS ci ratio: 3.500914e-02	ci left: 6.397557e-02	ci right 6.626068e-02	k: 11720	n:180000
ISM2   180000 perm   52 sec   (3477 perm/sec)   p_kst 6.511111e-02   p_cons 7.044444e-03   p_joint 1.214444e-02

Joint ci ratio: 9.558804e-02	ci left: 8.354099e-03	ci right 9.197833e-03	k: 1666	n:190000
Cons ci ratio: 1.071109e-01	ci left: 6.624900e-03	ci right 7.379733e-03	k: 1329	n:190000
KS ci ratio: 3.402126e-02	ci left: 6.419836e-02	ci right 6.642546e-02	k: 12408	n:190000
ISM2   190000 perm   55 sec   (3426 perm/sec)   p_kst 6.530526e-02   p_cons 6.994737e-03   p_joint 8.768421e-03

Joint ci ratio: 1.019347e-01	ci left: 6.965686e-03	ci right 7.718699e-03	k: 1467	n:200000
Cons ci ratio: 1.042116e-01	ci left: 6.658751e-03	ci right 7.395646e-03	k: 1404	n:200000
KS ci ratio: 3.312336e-02	ci left: 6.435998e-02	ci right 6.653264e-02	k: 13088	n:200000
ISM2   200000 perm   59 sec   (3371 perm/sec)   p_kst 6.544000e-02   p_cons 7.020000e-03   p_joint 7.335000e-03

Joint ci ratio: 1.131214e-01	ci left: 5.363961e-03	ci right 6.011703e-03	k: 1193	n:210000
Cons ci ratio: 1.017435e-01	ci left: 6.661777e-03	ci right 7.380503e-03	k: 1473	n:210000
KS ci ratio: 3.233321e-02	ci left: 6.435567e-02	ci right 6.647539e-02	k: 13736	n:210000
ISM2   210000 perm   63 sec   (3321 perm/sec)   p_kst 6.540952e-02   p_cons 7.014286e-03   p_joint 5.680952e-03

Joint ci ratio: 1.106923e-01	ci left: 5.354309e-03	ci right 5.986095e-03	k: 1246	n:220000
Cons ci ratio: 9.921651e-02	ci left: 6.695748e-03	ci right 7.399152e-03	k: 1549	n:220000
KS ci ratio: 3.158764e-02	ci left: 6.438841e-02	ci right 6.645942e-02	k: 14392	n:220000
ISM2   220000 perm   67 sec   (3269 perm/sec)   p_kst 6.541818e-02   p_cons 7.040909e-03   p_joint 5.663636e-03

Joint ci ratio: 1.099113e-01	ci left: 5.197591e-03	ci right 5.806277e-03	k: 1264	n:230000
Cons ci ratio: 9.695900e-02	ci left: 6.714237e-03	ci right 7.402621e-03	k: 1622	n:230000
KS ci ratio: 3.089138e-02	ci left: 6.441882e-02	ci right 6.644432e-02	k: 15048	n:230000
ISM2   230000 perm   72 sec   (3215 perm/sec)   p_kst 6.542609e-02   p_cons 7.052174e-03   p_joint 5.495652e-03

Joint ci ratio: 7.698538e-02	ci left: 1.027586e-02	ci right 1.110268e-02	k: 2564	n:240000
Cons ci ratio: 9.496174e-02	ci left: 6.715078e-03	ci right 7.388577e-03	k: 1691	n:240000
KS ci ratio: 3.024746e-02	ci left: 6.441406e-02	ci right 6.639645e-02	k: 15696	n:240000
ISM2   240000 perm   76 sec   (3165 perm/sec)   p_kst 6.540000e-02   p_cons 7.045833e-03   p_joint 1.068333e-02

Outputting figure to mutsig2_images.part000000000086/ISM2.3_1744_240000_0.0654_0.0070458_0.010683.png
                gene_name: ISM2
               theta_stop: 0.095 
                    nperm: 240000 
                     p_ks: 0.065 
        ci_ks_bounds_left: 0.064 
       ci_ks_bounds_right: 0.066 
                   p_cons: 0.0070 
      ci_cons_bounds_left: 0.0067 
     ci_cons_bounds_right: 0.0074 
                  p_joint: 0.011 
     ci_joint_bounds_left: 0.010 
    ci_joint_bounds_right: 0.011 

Current progress: 62 percent done.
ISOC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.637034e-02	ci left: 4.070126e-01	ci right 4.264360e-01	k: 4167	n:10000
Cons ci ratio: 4.385883e-02	ci left: 4.342293e-01	ci right 4.538033e-01	k: 4440	n:10000
KS ci ratio: 5.434929e-02	ci left: 3.327988e-01	ci right 3.514933e-01	k: 3421	n:10000
ISOC1   10000 perm   2 sec   (6086 perm/sec)   p_kst 3.421000e-01   p_cons 4.440000e-01   p_joint 4.167000e-01

Outputting figure to mutsig2_images.part000000000086/ISOC1.3_917_10000_0.3421_0.444_0.4167.png
                gene_name: ISOC1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 64 percent done.
ITFG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.914066e-02	ci left: 1.891452e-01	ci right 2.048317e-01	k: 1969	n:10000
Cons ci ratio: 2.172038e-02	ci left: 7.566645e-01	ci right 7.733809e-01	k: 7651	n:10000
KS ci ratio: 1.325683e-01	ci left: 7.504646e-02	ci right 8.579947e-02	k: 803	n:10000
ITFG1   10000 perm   2 sec   (5436 perm/sec)   p_kst 8.030000e-02   p_cons 7.651000e-01   p_joint 1.969000e-01

Joint ci ratio: 6.016202e-02	ci left: 1.698059e-01	ci right 1.803887e-01	k: 3501	n:20000
Cons ci ratio: 1.534369e-02	ci left: 7.595143e-01	ci right 7.713084e-01	k: 15309	n:20000
KS ci ratio: 9.477110e-02	ci left: 7.505352e-02	ci right 8.256947e-02	k: 1575	n:20000
ITFG1   20000 perm   4 sec   (4807 perm/sec)   p_kst 7.875000e-02   p_cons 7.654500e-01   p_joint 1.750500e-01

Outputting figure to mutsig2_images.part000000000086/ITFG1.3_1911_20000_0.07875_0.76545_0.17505.png
                gene_name: ITFG1
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.079 
        ci_ks_bounds_left: 0.075 
       ci_ks_bounds_right: 0.083 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 66 percent done.
IP6K3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.760723e-03	ci left: 9.677317e-01	ci right 9.743901e-01	k: 9712	n:10000
Cons ci ratio: 1.141455e-02	ci left: 9.164670e-01	ci right 9.270857e-01	k: 9219	n:10000
KS ci ratio: 7.839804e-02	ci left: 1.920999e-01	ci right 2.078753e-01	k: 1999	n:10000
IP6K3   10000 perm   2 sec   (5998 perm/sec)   p_kst 1.999000e-01   p_cons 9.219000e-01   p_joint 9.712000e-01

Outputting figure to mutsig2_images.part000000000086/IP6K3.2_1253_10000_0.1999_0.9219_0.9712.png
                gene_name: IP6K3
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.97 

Current progress: 68 percent done.
IPMK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.150142e-02	ci left: 9.153336e-01	ci right 9.260198e-01	k: 9208	n:10000
Cons ci ratio: 9.786555e-03	ci left: 9.366165e-01	ci right 9.459244e-01	k: 9414	n:10000
KS ci ratio: 5.653175e-02	ci left: 3.154251e-01	ci right 3.338771e-01	k: 3246	n:10000
IPMK   10000 perm   2 sec   (6032 perm/sec)   p_kst 3.246000e-01   p_cons 9.414000e-01   p_joint 9.208000e-01

Outputting figure to mutsig2_images.part000000000086/IPMK.2_1275_10000_0.3246_0.9414_0.9208.png
                gene_name: IPMK
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 70 percent done.
IPO4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.012858e-02	ci left: 6.190435e-01	ci right 6.380815e-01	k: 6286	n:10000
KS ci ratio: 3.997784e-02	ci left: 4.802562e-01	ci right 4.999496e-01	k: 4901	n:10000
IPO4   10000 perm   2 sec   (5029 perm/sec)   p_kst 4.901000e-01   p_cons 6.286000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000086/IPO4.2_3366_10000_0.4901_0.6286_1.png
                gene_name: IPO4
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
IPO5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.862176e-02	ci left: 8.081622e-01	ci right 8.234533e-01	k: 8159	n:10000
KS ci ratio: 9.075657e-03	ci left: 9.447135e-01	ci right 9.534225e-01	k: 9492	n:10000
IPO5   10000 perm   2 sec   (4836 perm/sec)   p_kst 9.492000e-01   p_cons 8.159000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000086/IPO5.2_3456_10000_0.9492_0.8159_1.png
                gene_name: IPO5
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
IPP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.508864e-02	ci left: 8.642720e-01	ci right 8.775111e-01	k: 8710	n:10000
Cons ci ratio: 1.594303e-02	ci left: 8.511065e-01	ci right 8.648842e-01	k: 8581	n:10000
KS ci ratio: 3.143955e-02	ci left: 5.988532e-01	ci right 6.180835e-01	k: 6085	n:10000
IPP   10000 perm   2 sec   (5908 perm/sec)   p_kst 6.085000e-01   p_cons 8.581000e-01   p_joint 8.710000e-01

Outputting figure to mutsig2_images.part000000000086/IPP.2_1889_10000_0.6085_0.8581_0.871.png
                gene_name: IPP
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.88 

Current progress: 75 percent done.
IPPK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.482064e-02	ci left: 7.048299e-01	ci right 7.226454e-01	k: 7138	n:10000
KS ci ratio: 3.861839e-02	ci left: 4.975503e-01	ci right 5.172454e-01	k: 5074	n:10000
IPPK   10000 perm   2 sec   (5690 perm/sec)   p_kst 5.074000e-01   p_cons 7.138000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000086/IPPK.2_1528_10000_0.5074_0.7138_1.png
                gene_name: IPPK
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
IQCA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.643927e-02	ci left: 6.781102e-01	ci right 6.963806e-01	k: 6873	n:10000
Cons ci ratio: 4.115543e-02	ci left: 4.657702e-01	ci right 4.854441e-01	k: 4756	n:10000
KS ci ratio: 4.384107e-02	ci left: 4.344288e-01	ci right 4.540037e-01	k: 4442	n:10000
IQCA1   10000 perm   2 sec   (5140 perm/sec)   p_kst 4.442000e-01   p_cons 4.756000e-01   p_joint 6.873000e-01

Outputting figure to mutsig2_images.part000000000086/IQCA1.2_2545_10000_0.4442_0.4756_0.6873.png
                gene_name: IQCA1
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 79 percent done.
IRF2BP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.246431e-01	ci left: 8.436377e-02	ci right 9.567638e-02	k: 899	n:10000
Cons ci ratio: 8.776711e-02	ci left: 1.589518e-01	ci right 1.736431e-01	k: 1662	n:10000
KS ci ratio: 8.508072e-02	ci left: 1.675982e-01	ci right 1.825915e-01	k: 1750	n:10000
IRF2BP1   10000 perm   2 sec   (5965 perm/sec)   p_kst 1.750000e-01   p_cons 1.662000e-01   p_joint 8.990000e-02

Joint ci ratio: 6.594358e-02	ci left: 1.451761e-01	ci right 1.551258e-01	k: 3002	n:20000
Cons ci ratio: 6.186098e-02	ci left: 1.620027e-01	ci right 1.723942e-01	k: 3343	n:20000
KS ci ratio: 6.014120e-02	ci left: 1.699047e-01	ci right 1.804899e-01	k: 3503	n:20000
IRF2BP1   20000 perm   4 sec   (5073 perm/sec)   p_kst 1.751500e-01   p_cons 1.671500e-01   p_joint 1.501000e-01

Outputting figure to mutsig2_images.part000000000086/IRF2BP1.2_1759_20000_0.17515_0.16715_0.1501.png
                gene_name: IRF2BP1
               theta_stop: 0.066 
                    nperm: 20000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 80 percent done.
IRF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.929540e-02	ci left: 6.321112e-01	ci right 6.510063e-01	k: 6416	n:10000
Cons ci ratio: 9.273055e-02	ci left: 1.445251e-01	ci right 1.586785e-01	k: 1515	n:10000
KS ci ratio: 1.460418e-01	ci left: 6.227288e-02	ci right 7.218104e-02	k: 671	n:10000
IRF4   10000 perm   2 sec   (6196 perm/sec)   p_kst 6.710000e-02   p_cons 1.515000e-01   p_joint 6.416000e-01

Joint ci ratio: 2.136220e-02	ci left: 6.206059e-01	ci right 6.340571e-01	k: 12547	n:20000
Cons ci ratio: 6.531773e-02	ci left: 1.475927e-01	ci right 1.576085e-01	k: 3051	n:20000
KS ci ratio: 1.018547e-01	ci left: 6.542758e-02	ci right 7.249836e-02	k: 1378	n:20000
IRF4   20000 perm   4 sec   (5399 perm/sec)   p_kst 6.890000e-02   p_cons 1.525500e-01   p_joint 6.273500e-01

Joint ci ratio: 1.821773e-02	ci left: 6.012459e-01	ci right 6.123335e-01	k: 18204	n:30000
Cons ci ratio: 5.324281e-02	ci left: 1.489435e-01	ci right 1.571238e-01	k: 4590	n:30000
KS ci ratio: 8.253425e-02	ci left: 6.703978e-02	ci right 7.284384e-02	k: 2097	n:30000
IRF4   30000 perm   6 sec   (5082 perm/sec)   p_kst 6.990000e-02   p_cons 1.530000e-01   p_joint 6.068000e-01

Outputting figure to mutsig2_images.part000000000086/IRF4.2_1388_30000_0.0699_0.153_0.6068.png
                gene_name: IRF4
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.070 
        ci_ks_bounds_left: 0.067 
       ci_ks_bounds_right: 0.073 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.61 

Current progress: 82 percent done.
IRS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.654387e-02	ci left: 6.763973e-01	ci right 6.946945e-01	k: 6856	n:10000
KS ci ratio: 2.490568e-02	ci left: 7.034174e-01	ci right 7.212588e-01	k: 7124	n:10000
IRS2   10000 perm   2 sec   (4806 perm/sec)   p_kst 7.124000e-01   p_cons 6.856000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000086/IRS2.2_4025_10000_0.7124_0.6856_1.png
                gene_name: IRS2
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
IRS4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.301790e-02	ci left: 7.349217e-01	ci right 7.521362e-01	k: 7436	n:10000
Cons ci ratio: 3.063385e-02	ci left: 6.112064e-01	ci right 6.303232e-01	k: 6208	n:10000
KS ci ratio: 2.359145e-02	ci left: 7.253233e-01	ci right 7.427402e-01	k: 7341	n:10000
IRS4   10000 perm   2 sec   (5028 perm/sec)   p_kst 7.341000e-01   p_cons 6.208000e-01   p_joint 7.436000e-01

Outputting figure to mutsig2_images.part000000000086/IRS4.2_3778_10000_0.7341_0.6208_0.7436.png
                gene_name: IRS4
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 86 percent done.
IRX3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.763529e-02	ci left: 8.242208e-01	ci right 8.389855e-01	k: 8317	n:10000
KS ci ratio: 1.626226e-02	ci left: 8.461108e-01	ci right 8.600828e-01	k: 8532	n:10000
IRX3   10000 perm   2 sec   (5861 perm/sec)   p_kst 8.532000e-01   p_cons 8.317000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000086/IRX3.2_1522_10000_0.8532_0.8317_1.png
                gene_name: IRX3
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
IRX4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.181702e-02	ci left: 7.550454e-01	ci right 7.718009e-01	k: 7635	n:10000
Cons ci ratio: 1.645643e-02	ci left: 8.430535e-01	ci right 8.571419e-01	k: 8502	n:10000
KS ci ratio: 2.823983e-02	ci left: 6.489092e-01	ci right 6.675985e-01	k: 6583	n:10000
IRX4   10000 perm   2 sec   (5523 perm/sec)   p_kst 6.583000e-01   p_cons 8.502000e-01   p_joint 7.635000e-01

Outputting figure to mutsig2_images.part000000000086/IRX4.2_1580_10000_0.6583_0.8502_0.7635.png
                gene_name: IRX4
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 89 percent done.
IRX5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.325118e-02	ci left: 4.411130e-01	ci right 4.607156e-01	k: 4509	n:10000
Cons ci ratio: 8.612609e-02	ci left: 1.641585e-01	ci right 1.790334e-01	k: 1715	n:10000
KS ci ratio: 1.788029e-02	ci left: 8.202549e-01	ci right 8.351537e-01	k: 8278	n:10000
IRX5   10000 perm   2 sec   (6045 perm/sec)   p_kst 8.278000e-01   p_cons 1.715000e-01   p_joint 4.509000e-01

Outputting figure to mutsig2_images.part000000000086/IRX5.2_1464_10000_0.8278_0.1715_0.4509.png
                gene_name: IRX5
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 91 percent done.
ISG20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.891494e-03	ci left: 9.749320e-01	ci right 9.807851e-01	k: 9780	n:10000
Cons ci ratio: 3.718438e-02	ci left: 5.164573e-01	ci right 5.361274e-01	k: 5263	n:10000
KS ci ratio: 1.691880e-02	ci left: 8.357199e-01	ci right 8.500797e-01	k: 8430	n:10000
ISG20   10000 perm   2 sec   (6293 perm/sec)   p_kst 8.430000e-01   p_cons 5.263000e-01   p_joint 9.780000e-01

Outputting figure to mutsig2_images.part000000000086/ISG20.2_558_10000_0.843_0.5263_0.978.png
                gene_name: ISG20
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 93 percent done.
ISL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.502819e-02	ci left: 8.651913e-01	ci right 8.783912e-01	k: 8719	n:10000
Cons ci ratio: 1.158783e-02	ci left: 9.142005e-01	ci right 9.249535e-01	k: 9197	n:10000
KS ci ratio: 9.817468e-02	ci left: 1.307088e-01	ci right 1.443032e-01	k: 1374	n:10000
ISL1   10000 perm   2 sec   (5910 perm/sec)   p_kst 1.374000e-01   p_cons 9.197000e-01   p_joint 8.719000e-01

Outputting figure to mutsig2_images.part000000000086/ISL1.2_1074_10000_0.1374_0.9197_0.8719.png
                gene_name: ISL1
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 95 percent done.
ISM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.341096e-02	ci left: 1.733008e-01	ci right 1.884856e-01	k: 1808	n:10000
KS ci ratio: 1.518244e-02	ci left: 8.628422e-01	ci right 8.761417e-01	k: 8696	n:10000
ISM1   10000 perm   2 sec   (5895 perm/sec)   p_kst 8.696000e-01   p_cons 1.808000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000086/ISM1.2_1419_10000_0.8696_0.1808_1.png
                gene_name: ISM1
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
ITCH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.230261e-02	ci left: 2.746806e-01	ci right 2.924457e-01	k: 2835	n:10000
Cons ci ratio: 1.111015e-01	ci left: 1.045169e-01	ci right 1.169109e-01	k: 1106	n:10000
KS ci ratio: 9.183970e-02	ci left: 1.469770e-01	ci right 1.612251e-01	k: 1540	n:10000
ITCH   10000 perm   2 sec   (5723 perm/sec)   p_kst 1.540000e-01   p_cons 1.106000e-01   p_joint 2.835000e-01

Joint ci ratio: 4.612100e-02	ci left: 2.591908e-01	ci right 2.714775e-01	k: 5306	n:20000
Cons ci ratio: 7.826432e-02	ci left: 1.070713e-01	ci right 1.158420e-01	k: 2228	n:20000
KS ci ratio: 6.533036e-02	ci left: 1.475434e-01	ci right 1.575579e-01	k: 3050	n:20000
ITCH   20000 perm   4 sec   (5033 perm/sec)   p_kst 1.525000e-01   p_cons 1.114000e-01   p_joint 2.653000e-01

Outputting figure to mutsig2_images.part000000000086/ITCH.2_2681_20000_0.1525_0.1114_0.2653.png
                gene_name: ITCH
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 98 percent done.
ITGA2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.452325e-01	ci left: 6.294902e-02	ci right 7.290448e-02	k: 678	n:10000
Cons ci ratio: 1.761150e-01	ci left: 4.303019e-02	ci right 5.143610e-02	k: 471	n:10000
KS ci ratio: 9.643344e-02	ci left: 1.349198e-01	ci right 1.486895e-01	k: 1417	n:10000
ITGA2B   10000 perm   2 sec   (4798 perm/sec)   p_kst 1.417000e-01   p_cons 4.710000e-02   p_joint 6.780000e-02

Joint ci ratio: 1.120645e-01	ci left: 5.441054e-02	ci right 6.091881e-02	k: 1152	n:20000
Cons ci ratio: 1.236440e-01	ci left: 4.488419e-02	ci right 5.084814e-02	k: 956	n:20000
KS ci ratio: 6.795275e-02	ci left: 1.377812e-01	ci right 1.475230e-01	k: 2852	n:20000
ITGA2B   20000 perm   5 sec   (4409 perm/sec)   p_kst 1.426000e-01   p_cons 4.780000e-02   p_joint 5.760000e-02

Joint ci ratio: 1.045026e-01	ci left: 4.245416e-02	ci right 4.716783e-02	k: 1343	n:30000
Cons ci ratio: 9.931356e-02	ci left: 4.690981e-02	ci right 5.184459e-02	k: 1480	n:30000
KS ci ratio: 5.573820e-02	ci left: 1.375742e-01	ci right 1.454954e-01	k: 4245	n:30000
ITGA2B   30000 perm   7 sec   (4242 perm/sec)   p_kst 1.415000e-01   p_cons 4.933333e-02   p_joint 4.476667e-02

Joint ci ratio: 9.146829e-02	ci left: 4.188851e-02	ci right 4.592804e-02	k: 1755	n:40000
Cons ci ratio: 8.565912e-02	ci left: 4.761500e-02	ci right 5.190066e-02	k: 1989	n:40000
KS ci ratio: 4.850729e-02	ci left: 1.369350e-01	ci right 1.437673e-01	k: 5613	n:40000
ITGA2B   40000 perm   10 sec   (4139 perm/sec)   p_kst 1.403250e-01   p_cons 4.972500e-02   p_joint 4.387500e-02

Outputting figure to mutsig2_images.part000000000086/ITGA2B.2_3240_40000_0.14033_0.049725_0.043875.png
                gene_name: ITGA2B
               theta_stop: 0.091 
                    nperm: 40000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.050 
      ci_cons_bounds_left: 0.048 
     ci_cons_bounds_right: 0.052 
                  p_joint: 0.044 
     ci_joint_bounds_left: 0.042 
    ci_joint_bounds_right: 0.046 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000086
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 86 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1650>
Subject: Job 8004188: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1650>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000087> was used as the working directory.
Started at Sun Nov 11 15:07:04 2012
Results reported at Sun Nov 11 15:18:00 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000087.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000087.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 87  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000087.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    697.49 sec.
    Max Memory :      4783 MB
    Max Swap   :      7237 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
87
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 87
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 87: processing genes 7781 - 7871
Calculating significance of each gene.
Using projection method.
7781	ITGA3	9.874166e-01
7782	ITGA4	5.781646e-01
7783	ITGA5	1
7784	ITGA6	2.909639e-01
7785	ITGA7	1
7786	ITGA8	9.603907e-01
7787	ITGA9	8.810359e-01
7788	ITGAD	9.268643e-01
7789	ITGAE	7.027692e-01
7790	ITGAL	9.883337e-01
7791	ITGAM	5.375767e-01
7792	ITGAV	1
7793	ITGAX	4.475925e-01
7794	ITGB1	2.067699e-01
7795	ITGB1BP1	2.362789e-01
7796	ITGB1BP2	2.556831e-01
7797	ITGB1BP3	1
7798	ITGB2	7.553775e-01
7799	ITGB3	3.735817e-01
7800	ITGB3BP	2.305341e-01
7801	ITGB4	9.622447e-01
7802	ITGB5	1
7803	ITGB6	9.084522e-01
7804	ITGB7	1
7805	ITGB8	4.544237e-01
7806	ITGBL1	4.162500e-02
7807	ITIH1	4.602450e-01
7808	ITIH2	1
7809	ITIH3	2.441382e-01
7810	ITIH4	9.326408e-01
7811	ITIH5	8.716239e-01
7812	ITIH5L	1.892945e-01
7813	ITK	5.957592e-01
7814	ITLN1	2.520953e-01
7815	ITLN2	6.383561e-02
7816	ITM2A	1.092769e-02
7817	ITM2B	1
7818	ITM2C	1
7819	ITPA	1
7820	ITPK1	1.952246e-01
7821	ITPKA	4.963945e-01
7822	ITPKB	9.809477e-01
7823	ITPKC	4.973791e-01
7824	ITPR1	9.825328e-01
7825	ITPR2	9.642328e-01
7826	ITPR3	9.998147e-01
7827	ITPRIP	1
7828	ITPRIPL1	3.335971e-01
7829	ITPRIPL2	1
7830	ITSN1	8.770798e-01
7831	ITSN2	1
7832	IVD	1
7833	IVL	6.043749e-02
7834	IVNS1ABP	3.548155e-01
7835	IWS1	7.854399e-01
7836	IYD	2.867620e-01
7837	IZUMO1	1
7838	JAG1	9.826671e-01
7839	JAG2	6.930229e-01
7840	JAGN1	4.536928e-01
7841	JAK1	9.203867e-01
7842	JAK2	6.225903e-01
7843	JAK3	3.340641e-01
7844	JAKMIP1	1
7845	JAKMIP2	7.742314e-01
7846	JAKMIP3	1
7847	JAM2	3.538326e-01
7848	JAM3	1
7849	JARID2	9.477814e-01
7850	JAZF1	4.752846e-01
7851	JDP2	1.206568e-01
7852	JHDM1D	5.344818e-01
7853	JKAMP	5.132727e-01
7854	JMJD1C	9.192188e-01
7855	JMJD4	1
7856	JMJD5	8.557646e-01
7857	JMJD6	6.360039e-01
7858	JMJD7	1
7859	JMJD7-PLA2G4B	9.908507e-01
7860	JMJD8	1
7861	JMY	9.278776e-01
7862	JOSD1	1
7863	JOSD2	1
7864	JPH1	7.643900e-01
7865	JPH2	1.126344e-01
7866	JPH3	1.950738e-01
7867	JPH4	1.886279e-02
7868	JRK	1
7869	JRKL	5.860826e-01
7870	JSRP1	1
7871	JTB	5.053479e-01
Done

Running MutSig 2:
Scatter job 87: processing genes 7781 - 7871
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ITIH5L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.329228e-02	ci left: 5.711569e-01	ci right 5.905960e-01	k: 5809	n:10000
KS ci ratio: 2.587498e-02	ci left: 6.873824e-01	ci right 7.055030e-01	k: 6965	n:10000
ITIH5L   10000 perm   2 sec   (4407 perm/sec)   p_kst 6.965000e-01   p_cons 5.809000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000087/ITIH5L.14_3994_10000_0.6965_0.5809_1.png
                gene_name: ITIH5L
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 2 percent done.
ITGA8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.239042e-02	ci left: 7.454356e-01	ci right 7.624162e-01	k: 7540	n:10000
Cons ci ratio: 1.654673e-02	ci left: 8.416271e-01	ci right 8.557691e-01	k: 8488	n:10000
KS ci ratio: 4.432366e-02	ci left: 4.290429e-01	ci right 4.485928e-01	k: 4388	n:10000
ITGA8   10000 perm   2 sec   (4056 perm/sec)   p_kst 4.388000e-01   p_cons 8.488000e-01   p_joint 7.540000e-01

Outputting figure to mutsig2_images.part000000000087/ITGA8.13_3312_10000_0.4388_0.8488_0.754.png
                gene_name: ITGA8
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.76 

Current progress: 3 percent done.
ITPR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.114669e-02	ci left: 1.814664e-01	ci right 1.969151e-01	k: 1891	n:10000
Cons ci ratio: 4.882037e-02	ci left: 3.823146e-01	ci right 4.015484e-01	k: 3919	n:10000
KS ci ratio: 1.269826e-01	ci left: 8.144990e-02	ci right 9.259206e-02	k: 869	n:10000
ITPR2   10000 perm   3 sec   (3266 perm/sec)   p_kst 8.690000e-02   p_cons 3.919000e-01   p_joint 1.891000e-01

Joint ci ratio: 5.650691e-02	ci left: 1.884406e-01	ci right 1.994485e-01	k: 3878	n:20000
Cons ci ratio: 3.438017e-02	ci left: 3.871191e-01	ci right 4.007117e-01	k: 7878	n:20000
KS ci ratio: 8.854373e-02	ci left: 8.528465e-02	ci right 9.323524e-02	k: 1784	n:20000
ITPR2   20000 perm   6 sec   (3113 perm/sec)   p_kst 8.920000e-02   p_cons 3.939000e-01   p_joint 1.939000e-01

Outputting figure to mutsig2_images.part000000000087/ITPR2.13_8334_20000_0.0892_0.3939_0.1939.png
                gene_name: ITPR2
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.089 
        ci_ks_bounds_left: 0.085 
       ci_ks_bounds_right: 0.093 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 5 percent done.
ITGAX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.289403e-01	ci left: 7.912021e-02	ci right 9.012318e-02	k: 845	n:10000
Cons ci ratio: 2.556333e-02	ci left: 6.925243e-01	ci right 7.105582e-01	k: 7016	n:10000
KS ci ratio: 2.322340e-01	ci left: 2.447729e-02	ci right 3.100172e-02	k: 276	n:10000
ITGAX   10000 perm   2 sec   (4995 perm/sec)   p_kst 2.760000e-02   p_cons 7.016000e-01   p_joint 8.450000e-02

Joint ci ratio: 8.835364e-02	ci left: 8.562761e-02	ci right 9.359217e-02	k: 1791	n:20000
Cons ci ratio: 1.748683e-02	ci left: 7.089898e-01	ci right 7.215475e-01	k: 14306	n:20000
KS ci ratio: 1.621233e-01	ci left: 2.609357e-02	ci right 3.074488e-02	k: 567	n:20000
ITGAX   20000 perm   4 sec   (4499 perm/sec)   p_kst 2.835000e-02   p_cons 7.153000e-01   p_joint 8.955000e-02

Joint ci ratio: 8.259776e-02	ci left: 6.694170e-02	ci right 7.274194e-02	k: 2094	n:30000
Cons ci ratio: 1.426285e-02	ci left: 7.105918e-01	ci right 7.208331e-01	k: 21472	n:30000
KS ci ratio: 1.340017e-01	ci left: 2.587211e-02	ci right 2.962009e-02	k: 831	n:30000
ITGAX   30000 perm   7 sec   (4385 perm/sec)   p_kst 2.770000e-02   p_cons 7.157333e-01   p_joint 6.980000e-02

Joint ci ratio: 7.607207e-02	ci left: 5.987706e-02	ci right 6.463673e-02	k: 2489	n:40000
Cons ci ratio: 1.237051e-02	ci left: 7.106738e-01	ci right 7.195450e-01	k: 28605	n:40000
KS ci ratio: 1.176031e-01	ci left: 2.543352e-02	ci right 2.863564e-02	k: 1080	n:40000
ITGAX   40000 perm   9 sec   (4303 perm/sec)   p_kst 2.700000e-02   p_cons 7.151250e-01   p_joint 6.222500e-02

Joint ci ratio: 6.399674e-02	ci left: 6.756185e-02	ci right 7.204825e-02	k: 3489	n:50000
Cons ci ratio: 1.127787e-02	ci left: 7.032698e-01	ci right 7.112661e-01	k: 35364	n:50000
KS ci ratio: 1.047602e-01	ci left: 2.581119e-02	ci right 2.868405e-02	k: 1361	n:50000
ITGAX   50000 perm   12 sec   (4223 perm/sec)   p_kst 2.722000e-02   p_cons 7.072800e-01   p_joint 6.978000e-02

Joint ci ratio: 6.552970e-02	ci left: 5.443599e-02	ci right 5.814041e-02	k: 3376	n:60000
Cons ci ratio: 1.027488e-02	ci left: 7.044439e-01	ci right 7.117360e-01	k: 42486	n:60000
KS ci ratio: 9.705833e-02	ci left: 2.518061e-02	ci right 2.776547e-02	k: 1587	n:60000
ITGAX   60000 perm   14 sec   (4156 perm/sec)   p_kst 2.645000e-02   p_cons 7.081000e-01   p_joint 5.626667e-02

Outputting figure to mutsig2_images.part000000000087/ITGAX.9_3612_60000_0.02645_0.7081_0.056267.png
                gene_name: ITGAX
               theta_stop: 0.097 
                    nperm: 60000 
                     p_ks: 0.026 
        ci_ks_bounds_left: 0.025 
       ci_ks_bounds_right: 0.028 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.056 
     ci_joint_bounds_left: 0.054 
    ci_joint_bounds_right: 0.058 

Current progress: 7 percent done.
ITGAD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.585663e-02	ci left: 6.876848e-01	ci right 7.058004e-01	k: 6968	n:10000
Cons ci ratio: 6.306242e-02	ci left: 2.698288e-01	ci right 2.875003e-01	k: 2786	n:10000
KS ci ratio: 1.807430e-02	ci left: 8.171035e-01	ci right 8.321069e-01	k: 8247	n:10000
ITGAD   10000 perm   2 sec   (4209 perm/sec)   p_kst 8.247000e-01   p_cons 2.786000e-01   p_joint 6.968000e-01

Outputting figure to mutsig2_images.part000000000087/ITGAD.8_3606_10000_0.8247_0.2786_0.6968.png
                gene_name: ITGAD
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 9 percent done.
ITGB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.572947e-02	ci left: 3.216780e-01	ci right 3.402206e-01	k: 3309	n:10000
Cons ci ratio: 2.823355e-02	ci left: 6.490099e-01	ci right 6.676978e-01	k: 6584	n:10000
KS ci ratio: 9.973603e-02	ci left: 1.270870e-01	ci right 1.405271e-01	k: 1337	n:10000
ITGB4   10000 perm   2 sec   (4184 perm/sec)   p_kst 1.337000e-01   p_cons 6.584000e-01   p_joint 3.309000e-01

Outputting figure to mutsig2_images.part000000000087/ITGB4.8_5788_10000_0.1337_0.6584_0.3309.png
                gene_name: ITGB4
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 10 percent done.
ITGA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.664801e-02	ci left: 4.041232e-01	ci right 4.235270e-01	k: 4138	n:10000
Cons ci ratio: 2.280068e-02	ci left: 7.385604e-01	ci right 7.556954e-01	k: 7472	n:10000
KS ci ratio: 6.954595e-02	ci left: 2.326438e-01	ci right 2.495073e-01	k: 2410	n:10000
ITGA6   10000 perm   2 sec   (4844 perm/sec)   p_kst 2.410000e-01   p_cons 7.472000e-01   p_joint 4.138000e-01

Outputting figure to mutsig2_images.part000000000087/ITGA6.7_3488_10000_0.241_0.7472_0.4138.png
                gene_name: ITGA6
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 12 percent done.
ITGAM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.244911e-01	ci left: 8.455810e-02	ci right 9.588194e-02	k: 901	n:10000
Cons ci ratio: 1.912852e-01	ci left: 3.643453e-02	ci right 4.423614e-02	k: 402	n:10000
KS ci ratio: 5.015712e-02	ci left: 3.695773e-01	ci right 3.886931e-01	k: 3791	n:10000
ITGAM   10000 perm   2 sec   (4778 perm/sec)   p_kst 3.791000e-01   p_cons 4.020000e-02   p_joint 9.010000e-02

Joint ci ratio: 7.191211e-02	ci left: 1.246790e-01	ci right 1.340291e-01	k: 2586	n:20000
Cons ci ratio: 1.339685e-01	ci left: 3.829380e-02	ci right 4.384064e-02	k: 820	n:20000
KS ci ratio: 3.528614e-02	ci left: 3.748104e-01	ci right 3.883241e-01	k: 7631	n:20000
ITGAM   20000 perm   5 sec   (4245 perm/sec)   p_kst 3.815500e-01   p_cons 4.100000e-02   p_joint 1.293000e-01

Joint ci ratio: 5.764199e-02	ci left: 1.297032e-01	ci right 1.374346e-01	k: 4006	n:30000
Cons ci ratio: 1.037372e-01	ci left: 4.307172e-02	ci right 4.781681e-02	k: 1362	n:30000
KS ci ratio: 2.875204e-02	ci left: 3.770287e-01	ci right 3.880607e-01	k: 11476	n:30000
ITGAM   30000 perm   7 sec   (4114 perm/sec)   p_kst 3.825333e-01   p_cons 4.540000e-02   p_joint 1.335333e-01

Joint ci ratio: 6.039773e-02	ci left: 9.239012e-02	ci right 9.816879e-02	k: 3810	n:40000
Cons ci ratio: 9.580081e-02	ci left: 3.824713e-02	ci right 4.211998e-02	k: 1606	n:40000
KS ci ratio: 2.497480e-02	ci left: 3.763619e-01	ci right 3.859054e-01	k: 15245	n:40000
ITGAM   40000 perm   10 sec   (3843 perm/sec)   p_kst 3.811250e-01   p_cons 4.015000e-02   p_joint 9.525000e-02

Outputting figure to mutsig2_images.part000000000087/ITGAM.7_3582_40000_0.38112_0.04015_0.09525.png
                gene_name: ITGAM
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.040 
      ci_cons_bounds_left: 0.038 
     ci_cons_bounds_right: 0.042 
                  p_joint: 0.095 
     ci_joint_bounds_left: 0.092 
    ci_joint_bounds_right: 0.098 

Current progress: 14 percent done.
JAK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.279234e-02	ci left: 2.165505e-01	ci right 2.330101e-01	k: 2247	n:10000
Cons ci ratio: 1.754394e-03	ci left: 9.970345e-01	ci right 9.988557e-01	k: 9981	n:10000
KS ci ratio: 1.121293e-01	ci left: 1.027615e-01	ci right 1.150674e-01	k: 1088	n:10000
JAK3   10000 perm   2 sec   (4508 perm/sec)   p_kst 1.088000e-01   p_cons 9.981000e-01   p_joint 2.247000e-01

Joint ci ratio: 4.452014e-02	ci left: 2.730895e-01	ci right 2.855747e-01	k: 5586	n:20000
Cons ci ratio: 1.209223e-03	ci left: 9.974509e-01	ci right 9.986971e-01	k: 19963	n:20000
KS ci ratio: 7.864204e-02	ci left: 1.061377e-01	ci right 1.148759e-01	k: 2209	n:20000
JAK3   20000 perm   5 sec   (4156 perm/sec)   p_kst 1.104500e-01   p_cons 9.981500e-01   p_joint 2.793000e-01

Outputting figure to mutsig2_images.part000000000087/JAK3.7_3467_20000_0.11045_0.99815_0.2793.png
                gene_name: JAK3
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 16 percent done.
JMJD1C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.455385e-02	ci left: 8.723452e-01	ci right 8.852332e-01	k: 8789	n:10000
KS ci ratio: 4.876921e-02	ci left: 3.828123e-01	ci right 4.020504e-01	k: 3924	n:10000
JMJD1C   10000 perm   4 sec   (2613 perm/sec)   p_kst 3.924000e-01   p_cons 8.789000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000087/JMJD1C.7_7727_10000_0.3924_0.8789_1.png
                gene_name: JMJD1C
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 17 percent done.
ITPKB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.712220e-01	ci left: 4.552219e-02	ci right 5.414247e-02	k: 497	n:10000
Cons ci ratio: 7.929105e-02	ci left: 1.885544e-01	ci right 2.042229e-01	k: 1963	n:10000
KS ci ratio: 1.352385e-01	ci left: 7.223612e-02	ci right 8.281155e-02	k: 774	n:10000
ITPKB   10000 perm   2 sec   (4234 perm/sec)   p_kst 7.740000e-02   p_cons 1.963000e-01   p_joint 4.970000e-02

Joint ci ratio: 9.932497e-02	ci left: 6.865040e-02	ci right 7.587455e-02	k: 1444	n:20000
Cons ci ratio: 5.210073e-02	ci left: 2.148197e-01	ci right 2.263616e-01	k: 4411	n:20000
KS ci ratio: 9.682007e-02	ci left: 7.207091e-02	ci right 7.945299e-02	k: 1514	n:20000
ITPKB   20000 perm   5 sec   (4168 perm/sec)   p_kst 7.570000e-02   p_cons 2.205500e-01   p_joint 7.220000e-02

Outputting figure to mutsig2_images.part000000000087/ITPKB.6_2869_20000_0.0757_0.22055_0.0722.png
                gene_name: ITPKB
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.076 
        ci_ks_bounds_left: 0.072 
       ci_ks_bounds_right: 0.079 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.072 
     ci_joint_bounds_left: 0.069 
    ci_joint_bounds_right: 0.076 

Current progress: 19 percent done.
ITPR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.439852e-01	ci left: 6.401182e-02	ci right 7.404101e-02	k: 689	n:10000
Cons ci ratio: 5.474812e-01	ci left: 3.713306e-03	ci right 6.586626e-03	k: 50	n:10000
KS ci ratio: 5.167123e-02	ci left: 3.557534e-01	ci right 3.747251e-01	k: 3652	n:10000
ITPR1   10000 perm   3 sec   (3701 perm/sec)   p_kst 3.652000e-01   p_cons 5.000000e-03   p_joint 6.890000e-02

Joint ci ratio: 9.682007e-02	ci left: 7.207091e-02	ci right 7.945299e-02	k: 1514	n:20000
Cons ci ratio: 4.193426e-01	ci left: 3.440841e-03	ci right 5.307780e-03	k: 86	n:20000
KS ci ratio: 3.609977e-02	ci left: 3.641498e-01	ci right 3.775878e-01	k: 7417	n:20000
ITPR1   20000 perm   6 sec   (3429 perm/sec)   p_kst 3.708500e-01   p_cons 4.300000e-03   p_joint 7.570000e-02

Joint ci ratio: 8.752818e-02	ci left: 5.991726e-02	ci right 6.543447e-02	k: 1879	n:30000
Cons ci ratio: 3.457367e-01	ci left: 3.530325e-03	ci right 5.034838e-03	k: 127	n:30000
KS ci ratio: 2.932221e-02	ci left: 3.678226e-01	ci right 3.788020e-01	k: 11199	n:30000
ITPR1   30000 perm   9 sec   (3245 perm/sec)   p_kst 3.733000e-01   p_cons 4.233333e-03   p_joint 6.263333e-02

Joint ci ratio: 6.548137e-02	ci left: 7.952619e-02	ci right 8.493464e-02	k: 3288	n:40000
Cons ci ratio: 2.948267e-01	ci left: 3.751922e-03	ci right 5.071619e-03	k: 175	n:40000
KS ci ratio: 2.536710e-02	ci left: 3.690555e-01	ci right 3.785628e-01	k: 14952	n:40000
ITPR1   40000 perm   13 sec   (3195 perm/sec)   p_kst 3.738000e-01   p_cons 4.375000e-03   p_joint 8.220000e-02

Joint ci ratio: 5.351235e-02	ci left: 9.432051e-02	ci right 9.952639e-02	k: 4845	n:50000
Cons ci ratio: 2.718916e-01	ci left: 3.577498e-03	ci right 4.721253e-03	k: 206	n:50000
KS ci ratio: 2.269701e-02	ci left: 3.693971e-01	ci right 3.778976e-01	k: 18682	n:50000
ITPR1   50000 perm   16 sec   (3150 perm/sec)   p_kst 3.736400e-01   p_cons 4.120000e-03   p_joint 9.690000e-02

Joint ci ratio: 7.007662e-02	ci left: 4.782705e-02	ci right 5.131668e-02	k: 2973	n:60000
Cons ci ratio: 1.651720e-01	ci left: 8.531448e-03	ci right 1.008324e-02	k: 557	n:60000
KS ci ratio: 2.140123e-02	ci left: 3.547778e-01	ci right 3.624692e-01	k: 21517	n:60000
ITPR1   60000 perm   19 sec   (3104 perm/sec)   p_kst 3.586167e-01   p_cons 9.283333e-03   p_joint 4.955000e-02

Joint ci ratio: 6.054538e-02	ci left: 5.478680e-02	ci right 5.822151e-02	k: 3954	n:70000
Cons ci ratio: 1.519800e-01	ci left: 8.698405e-03	ci right 1.014270e-02	k: 658	n:70000
KS ci ratio: 1.978992e-02	ci left: 3.556162e-01	ci right 3.627384e-01	k: 25142	n:70000
ITPR1   70000 perm   23 sec   (3066 perm/sec)   p_kst 3.591714e-01   p_cons 9.400000e-03   p_joint 5.648571e-02

Joint ci ratio: 5.675494e-02	ci left: 5.467561e-02	ci right 5.788167e-02	k: 4501	n:80000
Cons ci ratio: 1.413278e-01	ci left: 8.851456e-03	ci right 1.020947e-02	k: 761	n:80000
KS ci ratio: 1.845854e-02	ci left: 3.571717e-01	ci right 3.638384e-01	k: 28840	n:80000
ITPR1   80000 perm   26 sec   (3028 perm/sec)   p_kst 3.605000e-01   p_cons 9.512500e-03   p_joint 5.626250e-02

Joint ci ratio: 5.161243e-02	ci left: 5.867662e-02	ci right 6.179624e-02	k: 5420	n:90000
Cons ci ratio: 1.324096e-01	ci left: 9.005485e-03	ci right 1.029308e-02	k: 867	n:90000
KS ci ratio: 1.739496e-02	ci left: 3.575728e-01	ci right 3.638584e-01	k: 32464	n:90000
ITPR1   90000 perm   30 sec   (2992 perm/sec)   p_kst 3.607111e-01   p_cons 9.633333e-03   p_joint 6.022222e-02

Joint ci ratio: 4.859295e-02	ci left: 5.961337e-02	ci right 6.259215e-02	k: 6109	n:100000
Cons ci ratio: 1.253817e-01	ci left: 9.072726e-03	ci right 1.029597e-02	k: 967	n:100000
KS ci ratio: 1.649917e-02	ci left: 3.578226e-01	ci right 3.637855e-01	k: 36080	n:100000
ITPR1   100000 perm   34 sec   (2956 perm/sec)   p_kst 3.608000e-01   p_cons 9.670000e-03   p_joint 6.109000e-02

Joint ci ratio: 2.996914e-02	ci left: 1.325792e-01	ci right 1.366219e-01	k: 14805	n:110000
Cons ci ratio: 1.196489e-01	ci left: 9.085112e-03	ci right 1.025005e-02	k: 1062	n:110000
KS ci ratio: 1.515935e-02	ci left: 3.751877e-01	ci right 3.809278e-01	k: 41586	n:110000
ITPR1   110000 perm   38 sec   (2922 perm/sec)   p_kst 3.780545e-01   p_cons 9.654545e-03   p_joint 1.345909e-01

Joint ci ratio: 2.929451e-02	ci left: 1.279364e-01	ci right 1.317482e-01	k: 15580	n:120000
Cons ci ratio: 1.150893e-01	ci left: 9.023632e-03	ci right 1.013360e-02	k: 1148	n:120000
KS ci ratio: 1.451877e-02	ci left: 3.751555e-01	ci right 3.806504e-01	k: 45348	n:120000
ITPR1   120000 perm   42 sec   (2888 perm/sec)   p_kst 3.779000e-01   p_cons 9.566667e-03   p_joint 1.298333e-01

Joint ci ratio: 3.680370e-02	ci left: 7.878250e-02	ci right 8.174395e-02	k: 10433	n:130000
Cons ci ratio: 1.103842e-01	ci left: 9.077064e-03	ci right 1.014498e-02	k: 1248	n:130000
KS ci ratio: 1.462017e-02	ci left: 3.534734e-01	ci right 3.586869e-01	k: 46290	n:130000
ITPR1   130000 perm   46 sec   (2856 perm/sec)   p_kst 3.560769e-01   p_cons 9.600000e-03   p_joint 8.025385e-02

Joint ci ratio: 3.561092e-02	ci left: 7.823689e-02	ci right 8.108055e-02	k: 11151	n:140000
Cons ci ratio: 1.056213e-01	ci left: 9.227984e-03	ci right 1.026390e-02	k: 1363	n:140000
KS ci ratio: 1.408985e-02	ci left: 3.535198e-01	ci right 3.585433e-01	k: 49844	n:140000
ITPR1   140000 perm   50 sec   (2826 perm/sec)   p_kst 3.560286e-01   p_cons 9.735714e-03   p_joint 7.965000e-02

Joint ci ratio: 3.496545e-02	ci left: 7.595994e-02	ci right 7.866976e-02	k: 11596	n:150000
Cons ci ratio: 1.026240e-01	ci left: 9.138701e-03	ci right 1.013372e-02	k: 1444	n:150000
KS ci ratio: 1.361453e-02	ci left: 3.535231e-01	ci right 3.583758e-01	k: 53392	n:150000
ITPR1   150000 perm   54 sec   (2796 perm/sec)   p_kst 3.559467e-01   p_cons 9.626667e-03   p_joint 7.730667e-02

Joint ci ratio: 3.412821e-02	ci left: 7.487352e-02	ci right 7.747936e-02	k: 12187	n:160000
Cons ci ratio: 9.921369e-02	ci left: 9.182861e-03	ci right 1.014753e-02	k: 1545	n:160000
KS ci ratio: 1.318986e-02	ci left: 3.533351e-01	ci right 3.580327e-01	k: 56909	n:160000
ITPR1   160000 perm   58 sec   (2767 perm/sec)   p_kst 3.556813e-01   p_cons 9.656250e-03   p_joint 7.616875e-02

Outputting figure to mutsig2_images.part000000000087/ITPR1.6_8517_160000_0.35568_0.0096562_0.076169.png
                gene_name: ITPR1
               theta_stop: 0.099 
                    nperm: 160000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.0097 
      ci_cons_bounds_left: 0.0092 
     ci_cons_bounds_right: 0.010 
                  p_joint: 0.076 
     ci_joint_bounds_left: 0.075 
    ci_joint_bounds_right: 0.077 

Current progress: 21 percent done.
IVNS1ABP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.006440e-02	ci left: 2.896400e-01	ci right 3.076774e-01	k: 2986	n:10000
Cons ci ratio: 1.344875e-01	ci left: 7.301117e-02	ci right 8.363602e-02	k: 782	n:10000
KS ci ratio: 2.887004e-02	ci left: 6.388490e-01	ci right 6.576645e-01	k: 6483	n:10000
IVNS1ABP   10000 perm   2 sec   (5345 perm/sec)   p_kst 6.483000e-01   p_cons 7.820000e-02   p_joint 2.986000e-01

Joint ci ratio: 3.472459e-02	ci left: 3.823844e-01	ci right 3.959478e-01	k: 7783	n:20000
Cons ci ratio: 9.996020e-02	ci left: 6.782007e-02	ci right 7.500514e-02	k: 1427	n:20000
KS ci ratio: 1.992722e-02	ci left: 6.526336e-01	ci right 6.658201e-01	k: 13185	n:20000
IVNS1ABP   20000 perm   4 sec   (4795 perm/sec)   p_kst 6.592500e-01   p_cons 7.135000e-02   p_joint 3.891500e-01

Outputting figure to mutsig2_images.part000000000087/IVNS1ABP.6_1981_20000_0.65925_0.07135_0.38915.png
                gene_name: IVNS1ABP
               theta_stop: 0.100 
                    nperm: 20000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.071 
      ci_cons_bounds_left: 0.068 
     ci_cons_bounds_right: 0.075 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 22 percent done.
ITGB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.880045e-02	ci left: 6.399554e-01	ci right 6.587575e-01	k: 6494	n:10000
Cons ci ratio: 6.866427e-02	ci left: 2.372873e-01	ci right 2.542610e-01	k: 2457	n:10000
KS ci ratio: 2.146053e-02	ci left: 7.610165e-01	ci right 7.776263e-01	k: 7694	n:10000
ITGB1   10000 perm   2 sec   (5216 perm/sec)   p_kst 7.694000e-01   p_cons 2.457000e-01   p_joint 6.494000e-01

Outputting figure to mutsig2_images.part000000000087/ITGB1.5_2695_10000_0.7694_0.2457_0.6494.png
                gene_name: ITGB1
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 24 percent done.
ITGB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.427287e-02	ci left: 5.569195e-01	ci right 5.764416e-01	k: 5667	n:10000
Cons ci ratio: 8.109383e-02	ci left: 1.816632e-01	ci right 1.971182e-01	k: 1893	n:10000
KS ci ratio: 2.391178e-02	ci left: 7.199706e-01	ci right 7.374960e-01	k: 7288	n:10000
ITGB2   10000 perm   2 sec   (5458 perm/sec)   p_kst 7.288000e-01   p_cons 1.893000e-01   p_joint 5.667000e-01

Outputting figure to mutsig2_images.part000000000087/ITGB2.5_2370_10000_0.7288_0.1893_0.5667.png
                gene_name: ITGB2
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 26 percent done.
ITGBL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.901581e-02	ci left: 1.896376e-01	ci right 2.053390e-01	k: 1974	n:10000
Cons ci ratio: 8.449635e-02	ci left: 1.695643e-01	ci right 1.846243e-01	k: 1770	n:10000
KS ci ratio: 4.868751e-02	ci left: 3.836086e-01	ci right 4.028536e-01	k: 3932	n:10000
ITGBL1   10000 perm   2 sec   (5622 perm/sec)   p_kst 3.932000e-01   p_cons 1.770000e-01   p_joint 1.974000e-01

Outputting figure to mutsig2_images.part000000000087/ITGBL1.5_1529_10000_0.3932_0.177_0.1974.png
                gene_name: ITGBL1
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 28 percent done.
ITIH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.448267e-02	ci left: 2.087570e-01	ci right 2.250082e-01	k: 2168	n:10000
Cons ci ratio: 2.664142e-03	ci left: 9.939832e-01	ci right 9.967158e-01	k: 9955	n:10000
KS ci ratio: 1.712220e-01	ci left: 4.552219e-02	ci right 5.414247e-02	k: 497	n:10000
ITIH1   10000 perm   2 sec   (4950 perm/sec)   p_kst 4.970000e-02   p_cons 9.955000e-01   p_joint 2.168000e-01

Joint ci ratio: 6.841492e-02	ci left: 1.361549e-01	ci right 1.458497e-01	k: 2819	n:20000
Cons ci ratio: 1.799929e-03	ci left: 9.948580e-01	ci right 9.966932e-01	k: 19917	n:20000
KS ci ratio: 1.169324e-01	ci left: 5.008111e-02	ci right 5.634959e-02	k: 1063	n:20000
ITIH1   20000 perm   4 sec   (4510 perm/sec)   p_kst 5.315000e-02   p_cons 9.958500e-01   p_joint 1.409500e-01

Joint ci ratio: 6.110426e-02	ci left: 1.169351e-01	ci right 1.243386e-01	k: 3618	n:30000
Cons ci ratio: 1.481365e-03	ci left: 9.949652e-01	ci right 9.964697e-01	k: 29873	n:30000
KS ci ratio: 9.444866e-02	ci left: 5.172973e-02	ci right 5.689034e-02	k: 1628	n:30000
ITIH1   30000 perm   7 sec   (4341 perm/sec)   p_kst 5.426667e-02   p_cons 9.957667e-01   p_joint 1.206000e-01

Outputting figure to mutsig2_images.part000000000087/ITIH1.5_2824_30000_0.054267_0.99577_0.1206.png
                gene_name: ITIH1
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.054 
        ci_ks_bounds_left: 0.052 
       ci_ks_bounds_right: 0.057 
                   p_cons: 1.00 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 29 percent done.
ITIH3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.149235e-02	ci left: 5.980500e-01	ci right 6.172873e-01	k: 6077	n:10000
KS ci ratio: 1.579224e-02	ci left: 8.534524e-01	ci right 8.671370e-01	k: 8604	n:10000
ITIH3   10000 perm   2 sec   (4936 perm/sec)   p_kst 8.604000e-01   p_cons 6.077000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000087/ITIH3.5_2761_10000_0.8604_0.6077_1.png
                gene_name: ITIH3
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 31 percent done.
ITPRIPL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.254871e-02	ci left: 1.763499e-01	ci right 1.916346e-01	k: 1839	n:10000
Cons ci ratio: 9.892388e-03	ci left: 9.353730e-01	ci right 9.447687e-01	k: 9402	n:10000
KS ci ratio: 1.678782e-01	ci left: 4.734532e-02	ci right 5.611815e-02	k: 516	n:10000
ITPRIPL1   10000 perm   2 sec   (5302 perm/sec)   p_kst 5.160000e-02   p_cons 9.402000e-01   p_joint 1.839000e-01

Joint ci ratio: 7.540047e-02	ci left: 1.145432e-01	ci right 1.235679e-01	k: 2380	n:20000
Cons ci ratio: 6.936669e-03	ci left: 9.377474e-01	ci right 9.443236e-01	k: 18822	n:20000
KS ci ratio: 1.184690e-01	ci left: 4.881745e-02	ci right 5.501365e-02	k: 1037	n:20000
ITPRIPL1   20000 perm   4 sec   (4841 perm/sec)   p_kst 5.185000e-02   p_cons 9.411000e-01   p_joint 1.190000e-01

Joint ci ratio: 6.101802e-02	ci left: 1.172311e-01	ci right 1.246425e-01	k: 3627	n:30000
Cons ci ratio: 5.646119e-03	ci left: 9.387165e-01	ci right 9.440643e-01	k: 28243	n:30000
KS ci ratio: 9.715883e-02	ci left: 4.896076e-02	ci right 5.399322e-02	k: 1543	n:30000
ITPRIPL1   30000 perm   6 sec   (4635 perm/sec)   p_kst 5.143333e-02   p_cons 9.414333e-01   p_joint 1.209000e-01

Outputting figure to mutsig2_images.part000000000087/ITPRIPL1.5_1710_30000_0.051433_0.94143_0.1209.png
                gene_name: ITPRIPL1
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.051 
        ci_ks_bounds_left: 0.049 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 33 percent done.
ITSN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.525308e-02	ci left: 5.429908e-01	ci right 5.625785e-01	k: 5528	n:10000
Cons ci ratio: 3.496175e-02	ci left: 5.470984e-01	ci right 5.666684e-01	k: 5569	n:10000
KS ci ratio: 5.017843e-02	ci left: 3.693784e-01	ci right 3.884922e-01	k: 3789	n:10000
ITSN1   10000 perm   2 sec   (4375 perm/sec)   p_kst 3.789000e-01   p_cons 5.569000e-01   p_joint 5.528000e-01

Outputting figure to mutsig2_images.part000000000087/ITSN1.5_5328_10000_0.3789_0.5569_0.5528.png
                gene_name: ITSN1
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 34 percent done.
JAKMIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.996744e-02	ci left: 7.859382e-01	ci right 8.018902e-01	k: 7940	n:10000
Cons ci ratio: 5.591874e-02	ci left: 3.201890e-01	ci right 3.387104e-01	k: 3294	n:10000
KS ci ratio: 1.846048e-02	ci left: 8.108033e-01	ci right 8.260108e-01	k: 8185	n:10000
JAKMIP1   10000 perm   2 sec   (5698 perm/sec)   p_kst 8.185000e-01   p_cons 3.294000e-01   p_joint 7.940000e-01

Outputting figure to mutsig2_images.part000000000087/JAKMIP1.5_2651_10000_0.8185_0.3294_0.794.png
                gene_name: JAKMIP1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 36 percent done.
JAKMIP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.485100e-02	ci left: 7.043254e-01	ci right 7.221502e-01	k: 7133	n:10000
KS ci ratio: 1.063575e-02	ci left: 9.263722e-01	ci right 9.363747e-01	k: 9315	n:10000
JAKMIP2   10000 perm   2 sec   (5198 perm/sec)   p_kst 9.315000e-01   p_cons 7.133000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000087/JAKMIP2.5_2513_10000_0.9315_0.7133_1.png
                gene_name: JAKMIP2
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 38 percent done.
JARID2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.102203e-01	ci left: 3.005970e-02	ci right 3.721534e-02	k: 335	n:10000
Cons ci ratio: 3.699811e-01	ci left: 9.049096e-03	ci right 1.324298e-02	k: 110	n:10000
KS ci ratio: 5.159332e-02	ci left: 3.564494e-01	ci right 3.754288e-01	k: 3659	n:10000
JARID2   10000 perm   2 sec   (4589 perm/sec)   p_kst 3.659000e-01   p_cons 1.100000e-02   p_joint 3.350000e-02

Joint ci ratio: 1.363231e-01	ci left: 3.698772e-02	ci right 4.244714e-02	k: 793	n:20000
Cons ci ratio: 2.453702e-01	ci left: 1.105337e-02	ci right 1.419071e-02	k: 251	n:20000
KS ci ratio: 3.684622e-02	ci left: 3.546878e-01	ci right 3.680525e-01	k: 7227	n:20000
JARID2   20000 perm   5 sec   (4182 perm/sec)   p_kst 3.613500e-01   p_cons 1.255000e-02   p_joint 3.965000e-02

Joint ci ratio: 1.142889e-01	ci left: 3.557287e-02	ci right 3.991724e-02	k: 1131	n:30000
Cons ci ratio: 1.932223e-01	ci left: 1.222473e-02	ci right 1.487072e-02	k: 405	n:30000
KS ci ratio: 2.996565e-02	ci left: 3.577548e-01	ci right 3.686717e-01	k: 10896	n:30000
JARID2   30000 perm   7 sec   (4063 perm/sec)   p_kst 3.632000e-01   p_cons 1.350000e-02   p_joint 3.770000e-02

Joint ci ratio: 8.370741e-02	ci left: 4.979525e-02	ci right 5.417008e-02	k: 2078	n:40000
Cons ci ratio: 1.670756e-01	ci left: 1.243993e-02	ci right 1.473149e-02	k: 542	n:40000
KS ci ratio: 2.595708e-02	ci left: 3.583849e-01	ci right 3.678350e-01	k: 14524	n:40000
JARID2   40000 perm   10 sec   (3907 perm/sec)   p_kst 3.631000e-01   p_cons 1.355000e-02   p_joint 5.195000e-02

Joint ci ratio: 7.163809e-02	ci left: 5.447237e-02	ci right 5.853931e-02	k: 2824	n:50000
Cons ci ratio: 1.463793e-01	ci left: 1.310411e-02	ci right 1.519286e-02	k: 706	n:50000
KS ci ratio: 2.333286e-02	ci left: 3.565888e-01	ci right 3.650273e-01	k: 18040	n:50000
JARID2   50000 perm   13 sec   (3855 perm/sec)   p_kst 3.608000e-01   p_cons 1.412000e-02   p_joint 5.648000e-02

Joint ci ratio: 7.409728e-02	ci left: 4.291291e-02	ci right 4.623133e-02	k: 2673	n:60000
Cons ci ratio: 1.411008e-01	ci left: 1.180323e-02	ci right 1.361103e-02	k: 761	n:60000
KS ci ratio: 2.173161e-02	ci left: 3.477784e-01	ci right 3.554359e-01	k: 21096	n:60000
JARID2   60000 perm   16 sec   (3803 perm/sec)   p_kst 3.516000e-01   p_cons 1.268333e-02   p_joint 4.455000e-02

Joint ci ratio: 7.098787e-02	ci left: 4.025909e-02	ci right 4.323619e-02	k: 2921	n:70000
Cons ci ratio: 1.305598e-01	ci left: 1.188359e-02	ci right 1.355717e-02	k: 889	n:70000
KS ci ratio: 2.011210e-02	ci left: 3.482330e-01	ci right 3.553221e-01	k: 24624	n:70000
JARID2   70000 perm   19 sec   (3750 perm/sec)   p_kst 3.517714e-01   p_cons 1.270000e-02   p_joint 4.172857e-02

Joint ci ratio: 7.064318e-02	ci left: 3.575168e-02	ci right 3.838203e-02	k: 2964	n:80000
Cons ci ratio: 1.226257e-01	ci left: 1.183854e-02	ci right 1.339710e-02	k: 1008	n:80000
KS ci ratio: 1.876317e-02	ci left: 3.496750e-01	ci right 3.563106e-01	k: 28239	n:80000
JARID2   80000 perm   22 sec   (3700 perm/sec)   p_kst 3.529875e-01   p_cons 1.260000e-02   p_joint 3.705000e-02

Joint ci ratio: 6.612716e-02	ci left: 3.633377e-02	ci right 3.882948e-02	k: 3381	n:90000
Cons ci ratio: 1.156192e-01	ci left: 1.188147e-02	ci right 1.335019e-02	k: 1134	n:90000
KS ci ratio: 1.770946e-02	ci left: 3.493669e-01	ci right 3.556204e-01	k: 31724	n:90000
JARID2   90000 perm   25 sec   (3655 perm/sec)   p_kst 3.524889e-01   p_cons 1.260000e-02   p_joint 3.756667e-02

Joint ci ratio: 5.934304e-02	ci left: 4.056790e-02	ci right 4.305877e-02	k: 4180	n:100000
Cons ci ratio: 1.100895e-01	ci left: 1.183029e-02	ci right 1.321820e-02	k: 1251	n:100000
KS ci ratio: 1.679846e-02	ci left: 3.495882e-01	ci right 3.555204e-01	k: 35255	n:100000
JARID2   100000 perm   28 sec   (3610 perm/sec)   p_kst 3.525500e-01   p_cons 1.251000e-02   p_joint 4.180000e-02

Joint ci ratio: 5.039072e-02	ci left: 5.082994e-02	ci right 5.346646e-02	k: 5735	n:110000
Cons ci ratio: 1.052064e-01	ci left: 1.180750e-02	ci right 1.312749e-02	k: 1370	n:110000
KS ci ratio: 1.601817e-02	ci left: 3.496852e-01	ci right 3.553408e-01	k: 38776	n:110000
JARID2   110000 perm   31 sec   (3565 perm/sec)   p_kst 3.525091e-01   p_cons 1.245455e-02   p_joint 5.213636e-02

Joint ci ratio: 4.971917e-02	ci left: 4.802419e-02	ci right 5.048099e-02	k: 5909	n:120000
Cons ci ratio: 1.008859e-01	ci left: 1.179777e-02	ci right 1.305929e-02	k: 1490	n:120000
KS ci ratio: 1.533824e-02	ci left: 3.497464e-01	ci right 3.551607e-01	k: 42294	n:120000
JARID2   120000 perm   34 sec   (3522 perm/sec)   p_kst 3.524500e-01   p_cons 1.241667e-02   p_joint 4.924167e-02

Joint ci ratio: 5.270502e-02	ci left: 3.973862e-02	ci right 4.189730e-02	k: 5305	n:130000
Cons ci ratio: 9.672364e-02	ci left: 1.187306e-02	ci right 1.308729e-02	k: 1621	n:130000
KS ci ratio: 1.471532e-02	ci left: 3.505091e-01	ci right 3.557128e-01	k: 45904	n:130000
JARID2   130000 perm   37 sec   (3479 perm/sec)   p_kst 3.531077e-01   p_cons 1.246923e-02   p_joint 4.080769e-02

Outputting figure to mutsig2_images.part000000000087/JARID2.5_3813_130000_0.35311_0.012469_0.040808.png
                gene_name: JARID2
               theta_stop: 0.097 
                    nperm: 130000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.012 
      ci_cons_bounds_left: 0.012 
     ci_cons_bounds_right: 0.013 
                  p_joint: 0.041 
     ci_joint_bounds_left: 0.040 
    ci_joint_bounds_right: 0.042 

Current progress: 40 percent done.
ITGA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.146020e-02	ci left: 3.576425e-01	ci right 3.766349e-01	k: 3671	n:10000
Cons ci ratio: 3.808897e-02	ci left: 5.044512e-01	ci right 5.241404e-01	k: 5143	n:10000
KS ci ratio: 5.911754e-02	ci left: 2.962815e-01	ci right 3.144321e-01	k: 3053	n:10000
ITGA4   10000 perm   2 sec   (5082 perm/sec)   p_kst 3.053000e-01   p_cons 5.143000e-01   p_joint 3.671000e-01

Outputting figure to mutsig2_images.part000000000087/ITGA4.4_3211_10000_0.3053_0.5143_0.3671.png
                gene_name: ITGA4
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 41 percent done.
ITGA7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.058215e-02	ci left: 7.757010e-01	ci right 7.919333e-01	k: 7839	n:10000
KS ci ratio: 1.333732e-02	ci left: 8.901588e-01	ci right 9.022093e-01	k: 8963	n:10000
ITGA7   10000 perm   2 sec   (5064 perm/sec)   p_kst 8.963000e-01   p_cons 7.839000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000087/ITGA7.4_3785_10000_0.8963_0.7839_1.png
                gene_name: ITGA7
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 43 percent done.
ITGAE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.076856e-01	ci left: 1.106648e-01	ci right 1.233592e-01	k: 1169	n:10000
Cons ci ratio: 2.503333e-02	ci left: 7.012988e-01	ci right 7.191786e-01	k: 7103	n:10000
KS ci ratio: 3.017006e-01	ci left: 1.409482e-02	ci right 1.919237e-02	k: 165	n:10000
ITGAE   10000 perm   2 sec   (5215 perm/sec)   p_kst 1.650000e-02   p_cons 7.103000e-01   p_joint 1.169000e-01

Joint ci ratio: 1.592602e-01	ci left: 2.705441e-02	ci right 3.178372e-02	k: 587	n:20000
Cons ci ratio: 1.752332e-02	ci left: 7.081343e-01	ci right 7.207033e-01	k: 14289	n:20000
KS ci ratio: 2.173693e-01	ci left: 1.425935e-02	ci right 1.778339e-02	k: 319	n:20000
ITGAE   20000 perm   4 sec   (4651 perm/sec)   p_kst 1.595000e-02   p_cons 7.144500e-01   p_joint 2.935000e-02

Joint ci ratio: 9.242605e-02	ci left: 5.394633e-02	ci right 5.920663e-02	k: 1696	n:30000
Cons ci ratio: 1.475130e-02	ci left: 6.966208e-01	ci right 7.070067e-01	k: 21055	n:30000
KS ci ratio: 1.765505e-01	ci left: 1.473800e-02	ci right 1.762346e-02	k: 484	n:30000
ITGAE   30000 perm   7 sec   (4478 perm/sec)   p_kst 1.613333e-02   p_cons 7.018333e-01   p_joint 5.653333e-02

Joint ci ratio: 6.783508e-02	ci left: 7.443033e-02	ci right 7.968126e-02	k: 3081	n:40000
Cons ci ratio: 1.280202e-02	ci left: 6.964363e-01	ci right 7.054346e-01	k: 28038	n:40000
KS ci ratio: 1.534616e-01	ci left: 1.481715e-02	ci right 1.730382e-02	k: 641	n:40000
ITGAE   40000 perm   9 sec   (4342 perm/sec)   p_kst 1.602500e-02   p_cons 7.009500e-01   p_joint 7.702500e-02

Joint ci ratio: 6.552341e-02	ci left: 6.460704e-02	ci right 6.900342e-02	k: 3339	n:50000
Cons ci ratio: 1.136618e-02	ci left: 7.000171e-01	ci right 7.080392e-01	k: 35202	n:50000
KS ci ratio: 1.376534e-01	ci left: 1.486038e-02	ci right 1.707633e-02	k: 797	n:50000
ITGAE   50000 perm   12 sec   (4229 perm/sec)   p_kst 1.594000e-02   p_cons 7.040400e-01   p_joint 6.678000e-02

Joint ci ratio: 6.242530e-02	ci left: 5.973839e-02	ci right 6.360414e-02	k: 3699	n:60000
Cons ci ratio: 1.037521e-02	ci left: 7.003961e-01	ci right 7.077174e-01	k: 42244	n:60000
KS ci ratio: 1.276803e-01	ci left: 1.447830e-02	ci right 1.646897e-02	k: 927	n:60000
ITGAE   60000 perm   14 sec   (4144 perm/sec)   p_kst 1.545000e-02   p_cons 7.040667e-01   p_joint 6.165000e-02

Joint ci ratio: 6.953527e-02	ci left: 4.191644e-02	ci right 4.495012e-02	k: 3039	n:70000
Cons ci ratio: 9.620296e-03	ci left: 7.000295e-01	ci right 7.068108e-01	k: 49240	n:70000
KS ci ratio: 1.184687e-01	ci left: 1.448692e-02	ci right 1.632500e-02	k: 1077	n:70000
ITGAE   70000 perm   17 sec   (4074 perm/sec)   p_kst 1.538571e-02   p_cons 7.034286e-01   p_joint 4.341429e-02

Joint ci ratio: 6.745802e-02	ci left: 3.913213e-02	ci right 4.187632e-02	k: 3239	n:80000
Cons ci ratio: 9.002014e-03	ci left: 7.001085e-01	ci right 7.064518e-01	k: 56263	n:80000
KS ci ratio: 1.102282e-01	ci left: 1.470399e-02	ci right 1.643140e-02	k: 1244	n:80000
ITGAE   80000 perm   20 sec   (4015 perm/sec)   p_kst 1.555000e-02   p_cons 7.032875e-01   p_joint 4.048750e-02

Joint ci ratio: 6.183534e-02	ci left: 4.142116e-02	ci right 4.407508e-02	k: 3846	n:90000
Cons ci ratio: 8.198104e-03	ci left: 7.145907e-01	ci right 7.204842e-01	k: 64579	n:90000
KS ci ratio: 1.039101e-01	ci left: 1.475717e-02	ci right 1.638538e-02	k: 1400	n:90000
ITGAE   90000 perm   23 sec   (3915 perm/sec)   p_kst 1.555556e-02   p_cons 7.175444e-01   p_joint 4.273333e-02

Joint ci ratio: 6.191471e-02	ci left: 3.734547e-02	ci right 3.974139e-02	k: 3853	n:100000
Cons ci ratio: 7.781330e-03	ci left: 7.145378e-01	ci right 7.201296e-01	k: 71734	n:100000
KS ci ratio: 9.863149e-02	ci left: 1.478247e-02	ci right 1.632582e-02	k: 1554	n:100000
ITGAE   100000 perm   26 sec   (3856 perm/sec)   p_kst 1.554000e-02   p_cons 7.173400e-01   p_joint 3.853000e-02

Outputting figure to mutsig2_images.part000000000087/ITGAE.4_3664_100000_0.01554_0.71734_0.03853.png
                gene_name: ITGAE
               theta_stop: 0.099 
                    nperm: 100000 
                     p_ks: 0.016 
        ci_ks_bounds_left: 0.015 
       ci_ks_bounds_right: 0.016 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.039 
     ci_joint_bounds_left: 0.037 
    ci_joint_bounds_right: 0.040 

Current progress: 45 percent done.
ITGAV
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.965007e-02	ci left: 1.272828e-01	ci right 1.407312e-01	k: 1339	n:10000
Cons ci ratio: 1.269826e-01	ci left: 8.144990e-02	ci right 9.259206e-02	k: 869	n:10000
KS ci ratio: 4.962867e-02	ci left: 3.745520e-01	ci right 3.937155e-01	k: 3841	n:10000
ITGAV   10000 perm   2 sec   (4971 perm/sec)   p_kst 3.841000e-01   p_cons 8.690000e-02   p_joint 1.339000e-01

Joint ci ratio: 6.281066e-02	ci left: 1.578558e-01	ci right 1.681423e-01	k: 3259	n:20000
Cons ci ratio: 8.794992e-02	ci left: 8.636261e-02	ci right 9.435695e-02	k: 1806	n:20000
KS ci ratio: 3.467717e-02	ci left: 3.830323e-01	ci right 3.965997e-01	k: 7796	n:20000
ITGAV   20000 perm   4 sec   (4554 perm/sec)   p_kst 3.898000e-01   p_cons 9.030000e-02   p_joint 1.629500e-01

Outputting figure to mutsig2_images.part000000000087/ITGAV.4_3318_20000_0.3898_0.0903_0.16295.png
                gene_name: ITGAV
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.090 
      ci_cons_bounds_left: 0.086 
     ci_cons_bounds_right: 0.094 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 47 percent done.
ITGB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.806431e-02	ci left: 6.517269e-01	ci right 6.703792e-01	k: 6611	n:10000
Cons ci ratio: 4.864673e-02	ci left: 3.840068e-01	ci right 4.032552e-01	k: 3936	n:10000
KS ci ratio: 5.428899e-02	ci left: 3.332954e-01	ci right 3.519964e-01	k: 3426	n:10000
ITGB3   10000 perm   2 sec   (5189 perm/sec)   p_kst 3.426000e-01   p_cons 3.936000e-01   p_joint 6.611000e-01

Outputting figure to mutsig2_images.part000000000087/ITGB3.4_2427_10000_0.3426_0.3936_0.6611.png
                gene_name: ITGB3
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 48 percent done.
ITGB8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.664198e-03	ci left: 9.972795e-01	ci right 9.990094e-01	k: 9983	n:10000
KS ci ratio: 2.553891e-02	ci left: 6.929276e-01	ci right 7.109546e-01	k: 7020	n:10000
ITGB8   10000 perm   2 sec   (5441 perm/sec)   p_kst 7.020000e-01   p_cons 9.983000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000087/ITGB8.4_2366_10000_0.702_0.9983_1.png
                gene_name: ITGB8
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
ITIH5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.426275e-02	ci left: 7.141148e-01	ci right 7.317552e-01	k: 7230	n:10000
Cons ci ratio: 3.355274e-02	ci left: 5.673461e-01	ci right 5.868090e-01	k: 5771	n:10000
KS ci ratio: 3.243827e-02	ci left: 5.837970e-01	ci right 6.031485e-01	k: 5935	n:10000
ITIH5   10000 perm   2 sec   (5109 perm/sec)   p_kst 5.935000e-01   p_cons 5.771000e-01   p_joint 7.230000e-01

Outputting figure to mutsig2_images.part000000000087/ITIH5.4_3022_10000_0.5935_0.5771_0.723.png
                gene_name: ITIH5
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 52 percent done.
ITM2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.493302e-02	ci left: 2.583481e-01	ci right 2.757878e-01	k: 2670	n:10000
Cons ci ratio: 6.813143e-02	ci left: 2.401532e-01	ci right 2.571935e-01	k: 2486	n:10000
KS ci ratio: 4.803081e-02	ci left: 3.900798e-01	ci right 4.093787e-01	k: 3997	n:10000
ITM2A   10000 perm   2 sec   (5949 perm/sec)   p_kst 3.997000e-01   p_cons 2.486000e-01   p_joint 2.670000e-01

Outputting figure to mutsig2_images.part000000000087/ITM2A.4_816_10000_0.3997_0.2486_0.267.png
                gene_name: ITM2A
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 53 percent done.
ITPKC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.709069e-02	ci left: 3.111584e-01	ci right 3.295464e-01	k: 3203	n:10000
Cons ci ratio: 7.832462e-02	ci left: 1.923954e-01	ci right 2.081796e-01	k: 2002	n:10000
KS ci ratio: 5.730108e-02	ci left: 3.095710e-01	ci right 3.279347e-01	k: 3187	n:10000
ITPKC   10000 perm   2 sec   (5707 perm/sec)   p_kst 3.187000e-01   p_cons 2.002000e-01   p_joint 3.203000e-01

Outputting figure to mutsig2_images.part000000000087/ITPKC.4_2080_10000_0.3187_0.2002_0.3203.png
                gene_name: ITPKC
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 55 percent done.
ITPR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.107243e-02	ci left: 1.491353e-01	ci right 1.634655e-01	k: 1562	n:10000
Cons ci ratio: 2.013815e-02	ci left: 7.830994e-01	ci right 7.991306e-01	k: 7912	n:10000
KS ci ratio: 1.358092e-01	ci left: 7.165494e-02	ci right 8.219310e-02	k: 768	n:10000
ITPR3   10000 perm   2 sec   (4065 perm/sec)   p_kst 7.680000e-02   p_cons 7.912000e-01   p_joint 1.562000e-01

Joint ci ratio: 6.845731e-02	ci left: 1.360071e-01	ci right 1.456976e-01	k: 2816	n:20000
Cons ci ratio: 1.435590e-02	ci left: 7.827736e-01	ci right 7.941424e-01	k: 15770	n:20000
KS ci ratio: 9.156119e-02	ci left: 8.009344e-02	ci right 8.782802e-02	k: 1678	n:20000
ITPR3   20000 perm   5 sec   (3743 perm/sec)   p_kst 8.390000e-02   p_cons 7.885000e-01   p_joint 1.408000e-01

Outputting figure to mutsig2_images.part000000000087/ITPR3.4_8248_20000_0.0839_0.7885_0.1408.png
                gene_name: ITPR3
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.084 
        ci_ks_bounds_left: 0.080 
       ci_ks_bounds_right: 0.088 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 57 percent done.
ITSN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.868023e-02	ci left: 4.967503e-01	ci right 5.164458e-01	k: 5066	n:10000
Cons ci ratio: 4.734719e-02	ci left: 3.969510e-01	ci right 4.163034e-01	k: 4066	n:10000
KS ci ratio: 4.224355e-02	ci left: 4.527897e-01	ci right 4.724321e-01	k: 4626	n:10000
ITSN2   10000 perm   2 sec   (4633 perm/sec)   p_kst 4.626000e-01   p_cons 4.066000e-01   p_joint 5.066000e-01

Outputting figure to mutsig2_images.part000000000087/ITSN2.4_5301_10000_0.4626_0.4066_0.5066.png
                gene_name: ITSN2
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 59 percent done.
JAK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.278258e-02	ci left: 7.388637e-01	ci right 7.559919e-01	k: 7475	n:10000
Cons ci ratio: 4.999771e-02	ci left: 3.710696e-01	ci right 3.902000e-01	k: 3806	n:10000
KS ci ratio: 2.925720e-02	ci left: 6.327145e-01	ci right 6.516026e-01	k: 6422	n:10000
JAK2   10000 perm   2 sec   (4931 perm/sec)   p_kst 6.422000e-01   p_cons 3.806000e-01   p_joint 7.475000e-01

Outputting figure to mutsig2_images.part000000000087/JAK2.4_3491_10000_0.6422_0.3806_0.7475.png
                gene_name: JAK2
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 60 percent done.
JHDM1D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.762664e-02	ci left: 5.105536e-01	ci right 5.302345e-01	k: 5204	n:10000
Cons ci ratio: 4.484940e-02	ci left: 4.232593e-01	ci right 4.427798e-01	k: 4330	n:10000
KS ci ratio: 4.142864e-02	ci left: 4.624745e-01	ci right 4.821416e-01	k: 4723	n:10000
JHDM1D   10000 perm   2 sec   (5334 perm/sec)   p_kst 4.723000e-01   p_cons 4.330000e-01   p_joint 5.204000e-01

Outputting figure to mutsig2_images.part000000000087/JHDM1D.4_2906_10000_0.4723_0.433_0.5204.png
                gene_name: JHDM1D
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 62 percent done.
JPH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.567324e-02	ci left: 6.907094e-01	ci right 7.087742e-01	k: 6998	n:10000
Cons ci ratio: 5.636461e-02	ci left: 3.167152e-01	ci right 3.351863e-01	k: 3259	n:10000
KS ci ratio: 3.032241e-02	ci left: 6.160289e-01	ci right 6.350979e-01	k: 6256	n:10000
JPH2   10000 perm   2 sec   (6024 perm/sec)   p_kst 6.256000e-01   p_cons 3.259000e-01   p_joint 6.998000e-01

Outputting figure to mutsig2_images.part000000000087/JPH2.4_2126_10000_0.6256_0.3259_0.6998.png
                gene_name: JPH2
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 64 percent done.
JPH3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.542302e-02	ci left: 6.948436e-01	ci right 7.128375e-01	k: 7039	n:10000
KS ci ratio: 1.372829e-02	ci left: 8.845229e-01	ci right 8.968485e-01	k: 8908	n:10000
JPH3   10000 perm   2 sec   (5426 perm/sec)   p_kst 8.908000e-01   p_cons 7.039000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000087/JPH3.4_2267_10000_0.8908_0.7039_1.png
                gene_name: JPH3
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 66 percent done.
JPH4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.521376e-02	ci left: 2.055028e-01	ci right 2.216644e-01	k: 2135	n:10000
Cons ci ratio: 1.886917e-02	ci left: 8.041002e-01	ci right 8.195177e-01	k: 8119	n:10000
KS ci ratio: 1.391704e-01	ci left: 6.836336e-02	ci right 7.868673e-02	k: 734	n:10000
JPH4   10000 perm   2 sec   (5839 perm/sec)   p_kst 7.340000e-02   p_cons 8.119000e-01   p_joint 2.135000e-01

Joint ci ratio: 6.206165e-02	ci left: 1.611140e-01	ci right 1.714832e-01	k: 3325	n:20000
Cons ci ratio: 1.338799e-02	ci left: 8.053524e-01	ci right 8.162571e-01	k: 16217	n:20000
KS ci ratio: 9.848272e-02	ci left: 6.977402e-02	ci right 7.705059e-02	k: 1467	n:20000
JPH4   20000 perm   4 sec   (5272 perm/sec)   p_kst 7.335000e-02   p_cons 8.108500e-01   p_joint 1.662500e-01

Outputting figure to mutsig2_images.part000000000087/JPH4.4_1907_20000_0.07335_0.81085_0.16625.png
                gene_name: JPH4
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.073 
        ci_ks_bounds_left: 0.070 
       ci_ks_bounds_right: 0.077 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 67 percent done.
ITLN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.260329e-01	ci left: 8.261521e-02	ci right 9.382602e-02	k: 881	n:10000
Cons ci ratio: 1.316798e-01	ci left: 7.601602e-02	ci right 8.682930e-02	k: 813	n:10000
KS ci ratio: 5.626217e-02	ci left: 3.175092e-01	ci right 3.359918e-01	k: 3267	n:10000
ITLN2   10000 perm   2 sec   (6134 perm/sec)   p_kst 3.267000e-01   p_cons 8.130000e-02   p_joint 8.810000e-02

Joint ci ratio: 8.081697e-02	ci left: 1.009805e-01	ci right 1.095346e-01	k: 2104	n:20000
Cons ci ratio: 9.180014e-02	ci left: 7.970183e-02	ci right 8.741975e-02	k: 1670	n:20000
KS ci ratio: 3.968415e-02	ci left: 3.213446e-01	ci right 3.344055e-01	k: 6557	n:20000
ITLN2   20000 perm   4 sec   (5498 perm/sec)   p_kst 3.278500e-01   p_cons 8.350000e-02   p_joint 1.052000e-01

Outputting figure to mutsig2_images.part000000000087/ITLN2.3_1010_20000_0.32785_0.0835_0.1052.png
                gene_name: ITLN2
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.084 
      ci_cons_bounds_left: 0.080 
     ci_cons_bounds_right: 0.087 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 69 percent done.
ITPK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.483114e-02	ci left: 4.234587e-01	ci right 4.429803e-01	k: 4332	n:10000
Cons ci ratio: 1.007820e-01	ci left: 1.247387e-01	ci right 1.380768e-01	k: 1313	n:10000
KS ci ratio: 3.097963e-02	ci left: 6.058827e-01	ci right 6.250500e-01	k: 6155	n:10000
ITPK1   10000 perm   2 sec   (6097 perm/sec)   p_kst 6.155000e-01   p_cons 1.313000e-01   p_joint 4.332000e-01

Joint ci ratio: 2.409573e-02	ci left: 5.626531e-01	ci right 5.764266e-01	k: 11391	n:20000
Cons ci ratio: 7.228161e-02	ci left: 1.235468e-01	ci right 1.328616e-01	k: 2563	n:20000
KS ci ratio: 2.187695e-02	ci left: 6.093686e-01	ci right 6.228977e-01	k: 12323	n:20000
ITPK1   20000 perm   4 sec   (5482 perm/sec)   p_kst 6.161500e-01   p_cons 1.281500e-01   p_joint 5.695500e-01

Outputting figure to mutsig2_images.part000000000087/ITPK1.3_1333_20000_0.61615_0.12815_0.56955.png
                gene_name: ITPK1
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 71 percent done.
IVL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.015439e-02	ci left: 6.186415e-01	ci right 6.376837e-01	k: 6282	n:10000
Cons ci ratio: 6.089172e-02	ci left: 2.839917e-01	ci right 3.019291e-01	k: 2929	n:10000
KS ci ratio: 5.122836e-03	ci left: 9.805929e-01	ci right 9.857201e-01	k: 9833	n:10000
IVL   10000 perm   2 sec   (5942 perm/sec)   p_kst 9.833000e-01   p_cons 2.929000e-01   p_joint 6.282000e-01

Outputting figure to mutsig2_images.part000000000087/IVL.3_1762_10000_0.9833_0.2929_0.6282.png
                gene_name: IVL
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 72 percent done.
ITGA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.698355e-02	ci left: 5.191594e-01	ci right 5.388237e-01	k: 5290	n:10000
Cons ci ratio: 4.755381e-02	ci left: 3.948596e-01	ci right 4.141961e-01	k: 4045	n:10000
KS ci ratio: 1.551522e-02	ci left: 8.577378e-01	ci right 8.712491e-01	k: 8646	n:10000
ITGA5   10000 perm   2 sec   (5606 perm/sec)   p_kst 8.646000e-01   p_cons 4.045000e-01   p_joint 5.290000e-01

Outputting figure to mutsig2_images.part000000000087/ITGA5.2_3270_10000_0.8646_0.4045_0.529.png
                gene_name: ITGA5
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 74 percent done.
ITGA9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.414167e-02	ci left: 7.161338e-01	ci right 7.337350e-01	k: 7250	n:10000
Cons ci ratio: 3.360775e-02	ci left: 5.665439e-01	ci right 5.860116e-01	k: 5763	n:10000
KS ci ratio: 3.650251e-01	ci left: 9.321618e-03	ci right 1.357016e-02	k: 113	n:10000
ITGA9   10000 perm   2 sec   (5594 perm/sec)   p_kst 1.130000e-02   p_cons 5.763000e-01   p_joint 7.250000e-01

Joint ci ratio: 1.229040e-01	ci left: 4.541801e-02	ci right 5.141416e-02	k: 967	n:20000
Cons ci ratio: 2.367335e-02	ci left: 5.713198e-01	ci right 5.850575e-01	k: 11564	n:20000
KS ci ratio: 2.757897e-01	ci left: 8.621064e-03	ci right 1.142415e-02	k: 199	n:20000
ITGA9   20000 perm   4 sec   (5055 perm/sec)   p_kst 9.950000e-03   p_cons 5.782000e-01   p_joint 4.835000e-02

Joint ci ratio: 1.878661e-02	ci left: 5.864467e-01	ci right 5.976021e-01	k: 17761	n:30000
Cons ci ratio: 1.919913e-02	ci left: 5.758934e-01	ci right 5.870908e-01	k: 17445	n:30000
KS ci ratio: 2.214841e-01	ci left: 9.188445e-03	ci right 1.150785e-02	k: 309	n:30000
ITGA9   30000 perm   6 sec   (4838 perm/sec)   p_kst 1.030000e-02   p_cons 5.815000e-01   p_joint 5.920333e-01

Joint ci ratio: 6.701398e-02	ci left: 7.615320e-02	ci right 8.145814e-02	k: 3151	n:40000
Cons ci ratio: 1.597042e-02	ci left: 5.961564e-01	ci right 6.057790e-01	k: 24039	n:40000
KS ci ratio: 1.942806e-01	ci left: 9.095716e-03	ci right 1.107638e-02	k: 402	n:40000
ITGA9   40000 perm   9 sec   (4691 perm/sec)   p_kst 1.005000e-02   p_cons 6.009750e-01   p_joint 7.877500e-02

Joint ci ratio: 5.948968e-02	ci left: 7.751812e-02	ci right 8.229079e-02	k: 3994	n:50000
Cons ci ratio: 1.429979e-02	ci left: 5.961510e-01	ci right 6.047573e-01	k: 30023	n:50000
KS ci ratio: 1.733795e-01	ci left: 9.242099e-03	ci right 1.101547e-02	k: 505	n:50000
ITGA9   50000 perm   11 sec   (4569 perm/sec)   p_kst 1.010000e-02   p_cons 6.004600e-01   p_joint 7.988000e-02

Joint ci ratio: 5.438048e-02	ci left: 7.752854e-02	ci right 8.187889e-02	k: 4781	n:60000
Cons ci ratio: 1.304557e-02	ci left: 5.968349e-01	ci right 6.046887e-01	k: 36046	n:60000
KS ci ratio: 1.592299e-01	ci left: 9.203287e-03	ci right 1.081131e-02	k: 599	n:60000
ITGA9   60000 perm   13 sec   (4468 perm/sec)   p_kst 9.983333e-03   p_cons 6.007667e-01   p_joint 7.968333e-02

Joint ci ratio: 7.296468e-02	ci left: 3.815325e-02	ci right 4.105650e-02	k: 2771	n:70000
Cons ci ratio: 1.208424e-02	ci left: 5.968747e-01	ci right 6.041456e-01	k: 42036	n:70000
KS ci ratio: 1.474184e-01	ci left: 9.262376e-03	ci right 1.075009e-02	k: 699	n:70000
ITGA9   70000 perm   16 sec   (4364 perm/sec)   p_kst 9.985714e-03   p_cons 6.005143e-01   p_joint 3.958571e-02

Joint ci ratio: 4.728458e-02	ci left: 7.723880e-02	ci right 8.099179e-02	k: 6328	n:80000
Cons ci ratio: 1.128470e-02	ci left: 5.979223e-01	ci right 6.047204e-01	k: 48106	n:80000
KS ci ratio: 1.372919e-01	ci left: 9.394529e-03	ci right 1.079134e-02	k: 806	n:80000
ITGA9   80000 perm   19 sec   (4264 perm/sec)   p_kst 1.007500e-02   p_cons 6.013250e-01   p_joint 7.910000e-02

Joint ci ratio: 4.469677e-02	ci left: 7.697084e-02	ci right 8.050081e-02	k: 7085	n:90000
Cons ci ratio: 1.063003e-02	ci left: 5.985374e-01	ci right 6.049449e-01	k: 54157	n:90000
KS ci ratio: 1.298653e-01	ci left: 9.370982e-03	ci right 1.068311e-02	k: 901	n:90000
ITGA9   90000 perm   21 sec   (4188 perm/sec)   p_kst 1.001111e-02   p_cons 6.017444e-01   p_joint 7.872222e-02

Joint ci ratio: 4.253322e-02	ci left: 7.662241e-02	ci right 7.996210e-02	k: 7828	n:100000
Cons ci ratio: 1.006214e-02	ci left: 5.997693e-01	ci right 6.058447e-01	k: 60281	n:100000
KS ci ratio: 1.236519e-01	ci left: 9.334392e-03	ci right 1.057428e-02	k: 994	n:100000
ITGA9   100000 perm   24 sec   (4112 perm/sec)   p_kst 9.940000e-03   p_cons 6.028100e-01   p_joint 7.828000e-02

Joint ci ratio: 7.824340e-02	ci left: 2.143548e-02	ci right 2.318983e-02	k: 2453	n:110000
Cons ci ratio: 9.606109e-03	ci left: 5.993004e-01	ci right 6.050942e-01	k: 66242	n:110000
KS ci ratio: 1.175995e-01	ci left: 9.411586e-03	ci right 1.059628e-02	k: 1099	n:110000
ITGA9   110000 perm   27 sec   (4041 perm/sec)   p_kst 9.990909e-03   p_cons 6.022000e-01   p_joint 2.230000e-02

Joint ci ratio: 7.505719e-02	ci left: 2.139015e-02	ci right 2.306638e-02	k: 2666	n:120000
Cons ci ratio: 9.192358e-03	ci left: 5.996744e-01	ci right 6.052206e-01	k: 72294	n:120000
KS ci ratio: 1.129261e-01	ci left: 9.379938e-03	ci right 1.051060e-02	k: 1192	n:120000
ITGA9   120000 perm   30 sec   (3943 perm/sec)   p_kst 9.933333e-03   p_cons 6.024500e-01   p_joint 2.221667e-02

Joint ci ratio: 7.225664e-02	ci left: 2.133792e-02	ci right 2.294503e-02	k: 2877	n:130000
Cons ci ratio: 8.843869e-03	ci left: 5.991252e-01	ci right 6.044549e-01	k: 78233	n:130000
KS ci ratio: 1.082600e-01	ci left: 9.443776e-03	ci right 1.053210e-02	k: 1297	n:130000
ITGA9   130000 perm   33 sec   (3885 perm/sec)   p_kst 9.976923e-03   p_cons 6.017923e-01   p_joint 2.213077e-02

Joint ci ratio: 8.896300e-02	ci left: 1.306967e-02	ci right 1.429345e-02	k: 1914	n:140000
Cons ci ratio: 8.517589e-03	ci left: 5.994804e-01	ci right 6.046154e-01	k: 84287	n:140000
KS ci ratio: 1.042033e-01	ci left: 9.485400e-03	ci right 1.053504e-02	k: 1400	n:140000
ITGA9   140000 perm   37 sec   (3827 perm/sec)   p_kst 1.000000e-02   p_cons 6.020500e-01   p_joint 1.367143e-02

Joint ci ratio: 6.720286e-02	ci left: 2.143409e-02	ci right 2.293113e-02	k: 3326	n:150000
Cons ci ratio: 8.235591e-03	ci left: 5.991706e-01	ci right 6.041321e-01	k: 90248	n:150000
KS ci ratio: 1.006385e-01	ci left: 9.509132e-03	ci right 1.052328e-02	k: 1501	n:150000
ITGA9   150000 perm   40 sec   (3772 perm/sec)   p_kst 1.000667e-02   p_cons 6.016533e-01   p_joint 2.217333e-02

Joint ci ratio: 6.500150e-02	ci left: 2.150207e-02	ci right 2.295281e-02	k: 3555	n:160000
Cons ci ratio: 7.972264e-03	ci left: 5.993589e-01	ci right 6.041624e-01	k: 96282	n:160000
KS ci ratio: 9.686838e-02	ci left: 9.640226e-03	ci right 1.062765e-02	k: 1620	n:160000
ITGA9   160000 perm   43 sec   (3722 perm/sec)   p_kst 1.012500e-02   p_cons 6.017625e-01   p_joint 2.221875e-02

Outputting figure to mutsig2_images.part000000000087/ITGA9.2_3220_160000_0.010125_0.60176_0.022219.png
                gene_name: ITGA9
               theta_stop: 0.097 
                    nperm: 160000 
                     p_ks: 0.010 
        ci_ks_bounds_left: 0.0096 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.022 
     ci_joint_bounds_left: 0.022 
    ci_joint_bounds_right: 0.023 

Current progress: 76 percent done.
ITGB1BP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.231710e-02	ci left: 9.044264e-01	ci right 9.157334e-01	k: 9102	n:10000
Cons ci ratio: 6.533341e-02	ci left: 2.559738e-01	ci right 2.733635e-01	k: 2646	n:10000
KS ci ratio: 4.932590e-02	ci left: 3.774378e-01	ci right 3.966281e-01	k: 3870	n:10000
ITGB1BP2   10000 perm   2 sec   (6506 perm/sec)   p_kst 3.870000e-01   p_cons 2.646000e-01   p_joint 9.102000e-01

Outputting figure to mutsig2_images.part000000000087/ITGB1BP2.2_1088_10000_0.387_0.2646_0.9102.png
                gene_name: ITGB1BP2
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.92 

Current progress: 78 percent done.
ITIH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.530342e-02	ci left: 2.051084e-01	ci right 2.212590e-01	k: 2131	n:10000
Cons ci ratio: 2.181098e-02	ci left: 7.551466e-01	ci right 7.718996e-01	k: 7636	n:10000
KS ci ratio: 1.410433e-01	ci left: 6.662205e-02	ci right 7.682914e-02	k: 716	n:10000
ITIH2   10000 perm   2 sec   (5624 perm/sec)   p_kst 7.160000e-02   p_cons 7.636000e-01   p_joint 2.131000e-01

Joint ci ratio: 6.342771e-02	ci left: 1.552400e-01	ci right 1.654590e-01	k: 3206	n:20000
Cons ci ratio: 1.591360e-02	ci left: 7.460544e-01	ci right 7.580723e-01	k: 15042	n:20000
KS ci ratio: 1.006066e-01	ci left: 6.698988e-02	ci right 7.413558e-02	k: 1410	n:20000
ITIH2   20000 perm   4 sec   (5061 perm/sec)   p_kst 7.050000e-02   p_cons 7.521000e-01   p_joint 1.603000e-01

Joint ci ratio: 4.188309e-02	ci left: 2.212442e-01	ci right 2.307422e-01	k: 6779	n:30000
Cons ci ratio: 1.298762e-02	ci left: 7.473407e-01	ci right 7.571437e-01	k: 22568	n:30000
KS ci ratio: 8.123043e-02	ci left: 6.909987e-02	ci right 7.498333e-02	k: 2160	n:30000
ITIH2   30000 perm   6 sec   (4844 perm/sec)   p_kst 7.200000e-02   p_cons 7.522667e-01   p_joint 2.259667e-01

Outputting figure to mutsig2_images.part000000000087/ITIH2.2_2925_30000_0.072_0.75227_0.22597.png
                gene_name: ITIH2
               theta_stop: 0.081 
                    nperm: 30000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.075 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 79 percent done.
ITIH4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.590558e-02	ci left: 6.868784e-01	ci right 7.050074e-01	k: 6960	n:10000
KS ci ratio: 4.169550e-02	ci left: 4.592791e-01	ci right 4.789389e-01	k: 4691	n:10000
ITIH4   10000 perm   2 sec   (5697 perm/sec)   p_kst 4.691000e-01   p_cons 6.960000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000087/ITIH4.2_2889_10000_0.4691_0.696_1.png
                gene_name: ITIH4
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
ITK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.184452e-02	ci left: 9.108030e-01	ci right 9.217531e-01	k: 9164	n:10000
Cons ci ratio: 1.982091e-02	ci left: 7.883719e-01	ci right 8.042551e-01	k: 7964	n:10000
KS ci ratio: 5.877102e-02	ci left: 2.987602e-01	ci right 3.169519e-01	k: 3078	n:10000
ITK   10000 perm   2 sec   (6008 perm/sec)   p_kst 3.078000e-01   p_cons 7.964000e-01   p_joint 9.164000e-01

Outputting figure to mutsig2_images.part000000000087/ITK.2_1931_10000_0.3078_0.7964_0.9164.png
                gene_name: ITK
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 83 percent done.
ITLN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.262330e-02	ci left: 9.002141e-01	ci right 9.117481e-01	k: 9061	n:10000
Cons ci ratio: 2.207662e-02	ci left: 7.506950e-01	ci right 7.675538e-01	k: 7592	n:10000
KS ci ratio: 8.519871e-02	ci left: 1.672051e-01	ci right 1.821849e-01	k: 1746	n:10000
ITLN1   10000 perm   2 sec   (6530 perm/sec)   p_kst 1.746000e-01   p_cons 7.592000e-01   p_joint 9.061000e-01

Outputting figure to mutsig2_images.part000000000087/ITLN1.2_970_10000_0.1746_0.7592_0.9061.png
                gene_name: ITLN1
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 84 percent done.
ITPRIP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.737663e-02	ci left: 3.966523e-01	ci right 4.160023e-01	k: 4063	n:10000
Cons ci ratio: 2.242662e-02	ci left: 7.448289e-01	ci right 7.618233e-01	k: 7534	n:10000
KS ci ratio: 8.863152e-02	ci left: 1.563004e-01	ci right 1.708961e-01	k: 1635	n:10000
ITPRIP   10000 perm   2 sec   (6197 perm/sec)   p_kst 1.635000e-01   p_cons 7.534000e-01   p_joint 4.063000e-01

Outputting figure to mutsig2_images.part000000000087/ITPRIP.2_1648_10000_0.1635_0.7534_0.4063.png
                gene_name: ITPRIP
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 86 percent done.
IWS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.408530e-02	ci left: 8.793013e-01	ci right 8.918731e-01	k: 8857	n:10000
Cons ci ratio: 6.245627e-02	ci left: 2.736903e-01	ci right 2.914365e-01	k: 2825	n:10000
KS ci ratio: 4.095797e-02	ci left: 4.681673e-01	ci right 4.878455e-01	k: 4780	n:10000
IWS1   10000 perm   2 sec   (6033 perm/sec)   p_kst 4.780000e-01   p_cons 2.825000e-01   p_joint 8.857000e-01

Outputting figure to mutsig2_images.part000000000087/IWS1.2_2516_10000_0.478_0.2825_0.8857.png
                gene_name: IWS1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 88 percent done.
IYD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.076116e-03	ci left: 9.809150e-01	ci right 9.859977e-01	k: 9836	n:10000
Cons ci ratio: 2.876884e-02	ci left: 6.404584e-01	ci right 6.592543e-01	k: 6499	n:10000
KS ci ratio: 3.115002e-02	ci left: 6.032715e-01	ci right 6.224627e-01	k: 6129	n:10000
IYD   10000 perm   2 sec   (6454 perm/sec)   p_kst 6.129000e-01   p_cons 6.499000e-01   p_joint 9.836000e-01

Outputting figure to mutsig2_images.part000000000087/IYD.2_1067_10000_0.6129_0.6499_0.9836.png
                gene_name: IYD
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 90 percent done.
JAG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.114596e-02	ci left: 7.662810e-01	ci right 7.827587e-01	k: 7746	n:10000
KS ci ratio: 7.223301e-02	ci left: 2.192151e-01	ci right 2.357440e-01	k: 2274	n:10000
JAG2   10000 perm   2 sec   (5336 perm/sec)   p_kst 2.274000e-01   p_cons 7.746000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000087/JAG2.2_3821_10000_0.2274_0.7746_1.png
                gene_name: JAG2
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
JAK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.490694e-02	ci left: 8.670303e-01	ci right 8.801512e-01	k: 8737	n:10000
Cons ci ratio: 6.630385e-02	ci left: 2.503360e-01	ci right 2.676047e-01	k: 2589	n:10000
KS ci ratio: 1.949659e-02	ci left: 7.937479e-01	ci right 8.094760e-01	k: 8017	n:10000
JAK1   10000 perm   2 sec   (5443 perm/sec)   p_kst 8.017000e-01   p_cons 2.589000e-01   p_joint 8.737000e-01

Outputting figure to mutsig2_images.part000000000087/JAK1.2_3561_10000_0.8017_0.2589_0.8737.png
                gene_name: JAK1
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 93 percent done.
JAKMIP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.820347e-02	ci left: 5.029509e-01	ci right 5.226417e-01	k: 5128	n:10000
Cons ci ratio: 6.811321e-02	ci left: 2.402520e-01	ci right 2.572946e-01	k: 2487	n:10000
KS ci ratio: 6.565505e-03	ci left: 9.694208e-01	ci right 9.758999e-01	k: 9728	n:10000
JAKMIP3   10000 perm   2 sec   (5840 perm/sec)   p_kst 9.728000e-01   p_cons 2.487000e-01   p_joint 5.128000e-01

Outputting figure to mutsig2_images.part000000000087/JAKMIP3.2_2619_10000_0.9728_0.2487_0.5128.png
                gene_name: JAKMIP3
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 95 percent done.
JAM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.260898e-02	ci left: 3.475029e-01	ci right 3.663805e-01	k: 3569	n:10000
KS ci ratio: 2.202230e-02	ci left: 7.516055e-01	ci right 7.684428e-01	k: 7601	n:10000
JAM2   10000 perm   2 sec   (6536 perm/sec)   p_kst 7.601000e-01   p_cons 3.569000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000087/JAM2.2_937_10000_0.7601_0.3569_1.png
                gene_name: JAM2
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
JDP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.066030e-02	ci left: 1.503128e-01	ci right 1.646873e-01	k: 1574	n:10000
KS ci ratio: 1.069390e-02	ci left: 9.256491e-01	ci right 9.356983e-01	k: 9308	n:10000
JDP2   10000 perm   1 sec   (7115 perm/sec)   p_kst 9.308000e-01   p_cons 1.574000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000087/JDP2.2_541_10000_0.9308_0.1574_1.png
                gene_name: JDP2
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
JPH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.938760e-03	ci left: 9.879601e-01	ci right 9.919467e-01	k: 9901	n:10000
Cons ci ratio: 3.385608e-02	ci left: 5.629343e-01	ci right 5.824233e-01	k: 5727	n:10000
KS ci ratio: 5.443389e-02	ci left: 3.321036e-01	ci right 3.507889e-01	k: 3414	n:10000
JPH1   10000 perm   2 sec   (5938 perm/sec)   p_kst 3.414000e-01   p_cons 5.727000e-01   p_joint 9.901000e-01

Outputting figure to mutsig2_images.part000000000087/JPH1.2_2006_10000_0.3414_0.5727_0.9901.png
                gene_name: JPH1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000087
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 87 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1730>
Subject: Job 8004191: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1730>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000088> was used as the working directory.
Started at Sun Nov 11 15:07:04 2012
Results reported at Sun Nov 11 15:50:43 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000088.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000088.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 88  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000088.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   2270.41 sec.
    Max Memory :      5040 MB
    Max Swap   :      7315 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
88
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 88
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 88: processing genes 7872 - 7961
Calculating significance of each gene.
Using projection method.
7872	JUB	1
7873	JUN	1.518392e-01
7874	JUNB	1
7875	JUND	1.704668e-01
7876	JUP	9.077896e-01
7877	KAAG1	1
7878	KAL1	6.643165e-01
7879	KALRN	9.999662e-01
7880	KANK1	7.913365e-01
7881	KANK2	2.513448e-01
7882	KANK3	5.695852e-01
7883	KANK4	9.410889e-01
7884	KARS	6.023071e-01
7885	KAT2A	9.078850e-01
7886	KAT2B	4.265753e-01
7887	KAT5	7.722775e-01
7888	KATNA1	6.280844e-01
7889	KATNAL1	1
7890	KATNAL2	3.632821e-01
7891	KATNB1	8.860985e-01
7892	KAZ	5.393051e-01
7893	KAZALD1	4.224350e-01
7894	KBTBD10	4.189911e-01
7895	KBTBD12	4.395421e-01
7896	KBTBD2	4.067371e-01
7897	KBTBD3	1.704048e-01
7898	KBTBD4	2.314321e-01
7899	KBTBD5	1
7900	KBTBD6	7.949737e-01
7901	KBTBD7	8.786886e-01
7902	KBTBD8	8.576359e-01
7903	KCMF1	6.451451e-01
7904	KCNA1	4.322440e-01
7905	KCNA10	5.313946e-01
7906	KCNA2	6.550174e-01
7907	KCNA3	3.483562e-01
7908	KCNA4	8.387292e-01
7909	KCNA5	3.954434e-02
7910	KCNA6	1
7911	KCNA7	1
7912	KCNAB1	1
7913	KCNAB2	7.788986e-01
7914	KCNAB3	1
7915	KCNB1	9.726597e-01
7916	KCNB2	7.712258e-02
7917	KCNC1	8.709049e-01
7918	KCNC2	4.927576e-01
7919	KCNC3	1.206545e-01
7920	KCNC4	1
7921	KCND1	6.142843e-01
7922	KCND2	4.875756e-04
7923	KCND3	2.706722e-01
7924	KCNE1	1
7925	KCNE1L	1
7926	KCNE2	1
7927	KCNE3	2.661605e-01
7928	KCNE4	1.026518e-01
7929	KCNF1	1
7930	KCNG1	2.927190e-01
7931	KCNG2	6.272268e-02
7932	KCNG3	1
7933	KCNG4	9.442127e-02
7934	KCNH1	8.621227e-01
7935	KCNH2	7.101817e-01
7936	KCNH3	5.502195e-01
7937	KCNH4	1.828992e-01
7938	KCNH5	9.854772e-01
7939	KCNH6	4.661420e-01
7940	KCNH7	9.811643e-01
7941	KCNH8	5.199630e-02
7942	KCNIP1	3.107198e-01
7943	KCNIP2	1
7944	KCNIP3	4.308385e-01
7945	KCNIP4	1.537133e-02
7946	KCNJ1	2.574697e-02
7947	KCNJ10	2.218782e-01
7948	KCNJ11	3.997033e-01
7949	KCNJ12	5.727843e-01
7950	KCNJ13	1
7951	KCNJ14	5.972041e-01
7952	KCNJ15	1
7953	KCNJ16	3.003384e-01
7954	KCNJ2	2.422796e-01
7955	KCNJ3	1.235163e-05
7956	KCNJ4	3.895251e-01
7957	KCNJ5	1
7958	KCNJ6	3.110345e-01
7959	KCNJ8	1
7960	KCNJ9	9.086800e-02
7961	KCNK1	4.092634e-01
Done

Running MutSig 2:
Scatter job 88: processing genes 7872 - 7961
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
KALRN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.433571e-02	ci left: 5.560174e-01	ci right 5.755442e-01	k: 5658	n:10000
Cons ci ratio: 1.275626e-02	ci left: 8.983659e-01	ci right 9.099975e-01	k: 9043	n:10000
KS ci ratio: 4.787107e-02	ci left: 3.916729e-01	ci right 4.109846e-01	k: 4013	n:10000
KALRN   10000 perm   3 sec   (3906 perm/sec)   p_kst 4.013000e-01   p_cons 9.043000e-01   p_joint 5.658000e-01

Outputting figure to mutsig2_images.part000000000088/KALRN.17_9357_10000_0.4013_0.9043_0.5658.png
                gene_name: KALRN
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 2 percent done.
KCND2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.566850e-01	ci left: 5.426821e-02	ci right 6.359080e-02	k: 588	n:10000
Cons ci ratio: 1.469016e-02	ci left: 8.703006e-01	ci right 8.832791e-01	k: 8769	n:10000
KS ci ratio: 3.920006e-01	ci left: 7.963073e-03	ci right 1.193024e-02	k: 98	n:10000
KCND2   10000 perm   2 sec   (5082 perm/sec)   p_kst 9.800000e-03   p_cons 8.769000e-01   p_joint 5.880000e-02

Joint ci ratio: 1.273200e-01	ci left: 4.236218e-02	ci right 4.817095e-02	k: 904	n:20000
Cons ci ratio: 9.711135e-03	ci left: 8.862938e-01	ci right 8.949922e-01	k: 17814	n:20000
KS ci ratio: 2.924988e-01	ci left: 7.598793e-03	ci right 1.024694e-02	k: 177	n:20000
KCND2   20000 perm   5 sec   (4429 perm/sec)   p_kst 8.850000e-03   p_cons 8.907000e-01   p_joint 4.520000e-02

Joint ci ratio: 1.043807e-01	ci left: 4.255166e-02	ci right 4.727031e-02	k: 1346	n:30000
Cons ci ratio: 7.962661e-03	ci left: 8.862697e-01	ci right 8.933880e-01	k: 26696	n:30000
KS ci ratio: 2.340103e-01	ci left: 8.182088e-03	ci right 1.038119e-02	k: 277	n:30000
KCND2   30000 perm   7 sec   (4314 perm/sec)   p_kst 9.233333e-03   p_cons 8.898667e-01   p_joint 4.486667e-02

Joint ci ratio: 9.458102e-02	ci left: 3.922427e-02	ci right 4.314270e-02	k: 1646	n:40000
Cons ci ratio: 6.931433e-03	ci left: 8.857290e-01	ci right 8.919145e-01	k: 35554	n:40000
KS ci ratio: 2.042414e-01	ci left: 8.192693e-03	ci right 1.007960e-02	k: 364	n:40000
KCND2   40000 perm   9 sec   (4227 perm/sec)   p_kst 9.100000e-03   p_cons 8.888500e-01   p_joint 4.115000e-02

Joint ci ratio: 8.504399e-02	ci left: 3.902393e-02	ci right 4.250964e-02	k: 2037	n:50000
Cons ci ratio: 6.197390e-03	ci left: 8.861331e-01	ci right 8.916617e-01	k: 44446	n:50000
KS ci ratio: 1.791943e-01	ci left: 8.630088e-03	ci right 1.034758e-02	k: 473	n:50000
KCND2   50000 perm   12 sec   (4147 perm/sec)   p_kst 9.460000e-03   p_cons 8.889200e-01   p_joint 4.074000e-02

Joint ci ratio: 1.088266e-01	ci left: 2.001358e-02	ci right 2.233306e-02	k: 1269	n:60000
Cons ci ratio: 5.657467e-03	ci left: 8.863751e-01	ci right 8.914205e-01	k: 53335	n:60000
KS ci ratio: 1.653216e-01	ci left: 8.515465e-03	ci right 1.006589e-02	k: 556	n:60000
KCND2   60000 perm   15 sec   (4073 perm/sec)   p_kst 9.266667e-03   p_cons 8.889167e-01   p_joint 2.115000e-02

Joint ci ratio: 9.509366e-02	ci left: 2.257183e-02	ci right 2.483931e-02	k: 1658	n:70000
Cons ci ratio: 5.237072e-03	ci left: 8.865920e-01	ci right 8.912615e-01	k: 62226	n:70000
KS ci ratio: 1.525653e-01	ci left: 8.629675e-03	ci right 1.006858e-02	k: 653	n:70000
KCND2   70000 perm   17 sec   (4003 perm/sec)   p_kst 9.328571e-03   p_cons 8.889429e-01   p_joint 2.368571e-02

Joint ci ratio: 9.670654e-02	ci left: 1.915088e-02	ci right 2.110914e-02	k: 1609	n:80000
Cons ci ratio: 4.906073e-03	ci left: 8.864499e-01	ci right 8.908219e-01	k: 71092	n:80000
KS ci ratio: 1.425607e-01	ci left: 8.694677e-03	ci right 1.004126e-02	k: 748	n:80000
KCND2   80000 perm   20 sec   (3935 perm/sec)   p_kst 9.350000e-03   p_cons 8.886500e-01   p_joint 2.011250e-02

Joint ci ratio: 8.676278e-02	ci left: 2.121468e-02	ci right 2.314962e-02	k: 1995	n:90000
Cons ci ratio: 4.619630e-03	ci left: 8.868288e-01	ci right 8.909461e-01	k: 80001	n:90000
KS ci ratio: 1.384998e-01	ci left: 8.210879e-03	ci right 9.443314e-03	k: 793	n:90000
KCND2   90000 perm   23 sec   (3873 perm/sec)   p_kst 8.811111e-03   p_cons 8.889000e-01   p_joint 2.216667e-02

Joint ci ratio: 8.611574e-02	ci left: 1.942508e-02	ci right 2.118290e-02	k: 2029	n:100000
Cons ci ratio: 4.381222e-03	ci left: 8.869964e-01	ci right 8.909010e-01	k: 88896	n:100000
KS ci ratio: 1.313341e-01	ci left: 8.249774e-03	ci right 9.418982e-03	k: 882	n:100000
KCND2   100000 perm   26 sec   (3812 perm/sec)   p_kst 8.820000e-03   p_cons 8.889600e-01   p_joint 2.029000e-02

Joint ci ratio: 7.918921e-02	ci left: 2.092728e-02	ci right 2.266169e-02	k: 2396	n:110000
Cons ci ratio: 4.177630e-03	ci left: 8.870739e-01	ci right 8.907965e-01	k: 97784	n:110000
KS ci ratio: 1.241499e-01	ci left: 8.423899e-03	ci right 9.547673e-03	k: 987	n:110000
KCND2   110000 perm   29 sec   (3755 perm/sec)   p_kst 8.972727e-03   p_cons 8.889455e-01   p_joint 2.178182e-02

Joint ci ratio: 8.204811e-02	ci left: 1.790021e-02	ci right 1.943984e-02	k: 2239	n:120000
Cons ci ratio: 4.002377e-03	ci left: 8.870245e-01	ci right 8.905900e-01	k: 106658	n:120000
KS ci ratio: 1.154449e-01	ci left: 8.966966e-03	ci right 1.007360e-02	k: 1141	n:120000
KCND2   120000 perm   32 sec   (3699 perm/sec)   p_kst 9.508333e-03   p_cons 8.888167e-01   p_joint 1.865833e-02

Joint ci ratio: 8.119093e-02	ci left: 1.689968e-02	ci right 1.833734e-02	k: 2289	n:130000
Cons ci ratio: 3.837742e-03	ci left: 8.874889e-01	ci right 8.909091e-01	k: 115597	n:130000
KS ci ratio: 1.110595e-01	ci left: 8.964847e-03	ci right 1.002644e-02	k: 1233	n:130000
KCND2   130000 perm   36 sec   (3647 perm/sec)   p_kst 9.484615e-03   p_cons 8.892077e-01   p_joint 1.760769e-02

Joint ci ratio: 7.635478e-02	ci left: 1.777252e-02	ci right 1.919038e-02	k: 2586	n:140000
Cons ci ratio: 3.700693e-03	ci left: 8.874148e-01	ci right 8.907120e-01	k: 124470	n:140000
KS ci ratio: 1.063720e-01	ci left: 9.095836e-03	ci right 1.012463e-02	k: 1344	n:140000
KCND2   140000 perm   39 sec   (3592 perm/sec)   p_kst 9.600000e-03   p_cons 8.890714e-01   p_joint 1.847143e-02

Joint ci ratio: 7.453357e-02	ci left: 1.743135e-02	ci right 1.878737e-02	k: 2715	n:150000
Cons ci ratio: 3.570214e-03	ci left: 8.877483e-01	ci right 8.909300e-01	k: 133402	n:150000
KS ci ratio: 1.023739e-01	ci left: 9.184182e-03	ci right 1.018157e-02	k: 1451	n:150000
KCND2   150000 perm   42 sec   (3540 perm/sec)   p_kst 9.673333e-03   p_cons 8.893467e-01   p_joint 1.810000e-02

Joint ci ratio: 7.172766e-02	ci left: 1.766728e-02	ci right 1.898776e-02	k: 2931	n:160000
Cons ci ratio: 3.454807e-03	ci left: 8.879159e-01	ci right 8.909950e-01	k: 142314	n:160000
KS ci ratio: 9.921369e-02	ci left: 9.182861e-03	ci right 1.014753e-02	k: 1545	n:160000
KCND2   160000 perm   46 sec   (3492 perm/sec)   p_kst 9.656250e-03   p_cons 8.894625e-01   p_joint 1.831875e-02

Outputting figure to mutsig2_images.part000000000088/KCND2.12_1917_160000_0.0096562_0.88946_0.018319.png
                gene_name: KCND2
               theta_stop: 0.099 
                    nperm: 160000 
                     p_ks: 0.0097 
        ci_ks_bounds_left: 0.0092 
       ci_ks_bounds_right: 0.010 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.018 
     ci_joint_bounds_left: 0.018 
    ci_joint_bounds_right: 0.019 

Current progress: 3 percent done.
KCNH7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.318683e-02	ci left: 3.425342e-01	ci right 3.613521e-01	k: 3519	n:10000
Cons ci ratio: 1.005619e-01	ci left: 1.252279e-01	ci right 1.385873e-01	k: 1318	n:10000
KS ci ratio: 4.322499e-02	ci left: 4.414124e-01	ci right 4.610161e-01	k: 4512	n:10000
KCNH7   10000 perm   2 sec   (4481 perm/sec)   p_kst 4.512000e-01   p_cons 1.318000e-01   p_joint 3.519000e-01

Joint ci ratio: 4.230543e-02	ci left: 2.939516e-01	ci right 3.067065e-01	k: 6006	n:20000
Cons ci ratio: 7.168948e-02	ci left: 1.253682e-01	ci right 1.347397e-01	k: 2600	n:20000
KS ci ratio: 2.982515e-02	ci left: 4.564698e-01	ci right 4.703408e-01	k: 9268	n:20000
KCNH7   20000 perm   5 sec   (4069 perm/sec)   p_kst 4.634000e-01   p_cons 1.300000e-01   p_joint 3.003000e-01

Outputting figure to mutsig2_images.part000000000088/KCNH7.12_3721_20000_0.4634_0.13_0.3003.png
                gene_name: KCNH7
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 5 percent done.
KCNH8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.339117e-02	ci left: 4.395167e-01	ci right 4.591129e-01	k: 4493	n:10000
Cons ci ratio: 3.143295e-02	ci left: 5.989536e-01	ci right 6.181831e-01	k: 6086	n:10000
KS ci ratio: 6.039576e-02	ci left: 2.873607e-01	ci right 3.053581e-01	k: 2963	n:10000
KCNH8   10000 perm   2 sec   (4526 perm/sec)   p_kst 2.963000e-01   p_cons 6.086000e-01   p_joint 4.493000e-01

Outputting figure to mutsig2_images.part000000000088/KCNH8.12_3388_10000_0.2963_0.6086_0.4493.png
                gene_name: KCNH8
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 6 percent done.
KCNJ3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.669465e-02	ci left: 8.392842e-01	ci right 8.535134e-01	k: 8465	n:10000
KS ci ratio: 1.961910e-02	ci left: 7.917190e-01	ci right 8.075061e-01	k: 7997	n:10000
KCNJ3   10000 perm   2 sec   (5137 perm/sec)   p_kst 7.997000e-01   p_cons 8.465000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000088/KCNJ3.11_1518_10000_0.7997_0.8465_1.png
                gene_name: KCNJ3
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 8 percent done.
KCNA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.969375e-02	ci left: 2.922170e-01	ci right 3.102989e-01	k: 3012	n:10000
Cons ci ratio: 4.680217e-02	ci left: 4.025292e-01	ci right 4.219220e-01	k: 4122	n:10000
KS ci ratio: 7.956843e-02	ci left: 1.874712e-01	ci right 2.031067e-01	k: 1952	n:10000
KCNA4   10000 perm   2 sec   (5259 perm/sec)   p_kst 1.952000e-01   p_cons 4.122000e-01   p_joint 3.012000e-01

Outputting figure to mutsig2_images.part000000000088/KCNA4.10_1966_10000_0.1952_0.4122_0.3012.png
                gene_name: KCNA4
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 9 percent done.
KCNH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.818818e-02	ci left: 5.031509e-01	ci right 5.228415e-01	k: 5130	n:10000
Cons ci ratio: 6.086234e-02	ci left: 2.841899e-01	ci right 3.021308e-01	k: 2931	n:10000
KS ci ratio: 4.144526e-02	ci left: 4.622748e-01	ci right 4.819415e-01	k: 4721	n:10000
KCNH1   10000 perm   2 sec   (4952 perm/sec)   p_kst 4.721000e-01   p_cons 2.931000e-01   p_joint 5.130000e-01

Outputting figure to mutsig2_images.part000000000088/KCNH1.10_3014_10000_0.4721_0.2931_0.513.png
                gene_name: KCNH1
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 11 percent done.
KCNH5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.592394e-02	ci left: 6.865760e-01	ci right 7.047099e-01	k: 6957	n:10000
KS ci ratio: 1.971700e-02	ci left: 7.900960e-01	ci right 8.059300e-01	k: 7981	n:10000
KCNH5   10000 perm   2 sec   (5444 perm/sec)   p_kst 7.981000e-01   p_cons 6.957000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000088/KCNH5.10_3045_10000_0.7981_0.6957_1.png
                gene_name: KCNH5
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 12 percent done.
KCNB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.250251e-02	ci left: 2.733932e-01	ci right 2.911338e-01	k: 2822	n:10000
Cons ci ratio: 1.127108e-01	ci left: 1.017865e-01	ci right 1.140430e-01	k: 1078	n:10000
KS ci ratio: 3.670253e-02	ci left: 5.229629e-01	ci right 5.426180e-01	k: 5328	n:10000
KCNB2   10000 perm   2 sec   (5591 perm/sec)   p_kst 5.328000e-01   p_cons 1.078000e-01   p_joint 2.822000e-01

Joint ci ratio: 4.084210e-02	ci left: 3.088628e-01	ci right 3.217909e-01	k: 6306	n:20000
Cons ci ratio: 8.157699e-02	ci left: 9.926215e-02	ci right 1.077535e-01	k: 2069	n:20000
KS ci ratio: 2.605882e-02	ci left: 5.238546e-01	ci right 5.377365e-01	k: 10616	n:20000
KCNB2   20000 perm   4 sec   (4942 perm/sec)   p_kst 5.308000e-01   p_cons 1.034500e-01   p_joint 3.153000e-01

Outputting figure to mutsig2_images.part000000000088/KCNB2.9_2744_20000_0.5308_0.10345_0.3153.png
                gene_name: KCNB2
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.099 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 14 percent done.
KANK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.580662e-02	ci left: 2.532041e-01	ci right 2.705349e-01	k: 2618	n:10000
Cons ci ratio: 1.495306e-01	ci left: 5.947341e-02	ci right 6.918228e-02	k: 642	n:10000
KS ci ratio: 9.490867e-03	ci left: 9.400391e-01	ci right 9.490997e-01	k: 9447	n:10000
KANK4   10000 perm   2 sec   (5392 perm/sec)   p_kst 9.447000e-01   p_cons 6.420000e-02   p_joint 2.618000e-01

Joint ci ratio: 5.038219e-02	ci left: 2.264616e-01	ci right 2.382163e-01	k: 4646	n:20000
Cons ci ratio: 1.071230e-01	ci left: 5.937901e-02	ci right 6.614879e-02	k: 1254	n:20000
KS ci ratio: 6.621660e-03	ci left: 9.428286e-01	ci right 9.491410e-01	k: 18921	n:20000
KANK4   20000 perm   4 sec   (5025 perm/sec)   p_kst 9.460500e-01   p_cons 6.270000e-02   p_joint 2.323000e-01

Joint ci ratio: 4.167270e-02	ci left: 2.229977e-01	ci right 2.325218e-01	k: 6832	n:30000
Cons ci ratio: 8.747855e-02	ci left: 5.998256e-02	ci right 6.550249e-02	k: 1881	n:30000
KS ci ratio: 5.438472e-03	ci left: 9.428030e-01	ci right 9.479770e-01	k: 28363	n:30000
KANK4   30000 perm   6 sec   (4812 perm/sec)   p_kst 9.454333e-01   p_cons 6.270000e-02   p_joint 2.277333e-01

Outputting figure to mutsig2_images.part000000000088/KANK4.8_3024_30000_0.94543_0.0627_0.22773.png
                gene_name: KANK4
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.063 
      ci_cons_bounds_left: 0.060 
     ci_cons_bounds_right: 0.066 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 16 percent done.
KCNA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.668779e-02	ci left: 5.231631e-01	ci right 5.428176e-01	k: 5330	n:10000
KS ci ratio: 4.098259e-02	ci left: 4.678676e-01	ci right 4.875454e-01	k: 4777	n:10000
KCNA5   10000 perm   2 sec   (6401 perm/sec)   p_kst 4.777000e-01   p_cons 5.330000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000088/KCNA5.8_1846_10000_0.4777_0.533_1.png
                gene_name: KCNA5
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 17 percent done.
KCNJ12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.103001e-02	ci left: 9.214164e-01	ci right 9.317334e-01	k: 9267	n:10000
KS ci ratio: 1.345887e-02	ci left: 8.884162e-01	ci right 9.005529e-01	k: 8946	n:10000
KCNJ12   10000 perm   1 sec   (6924 perm/sec)   p_kst 8.946000e-01   p_cons 9.267000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000088/KCNJ12.8_1306_10000_0.8946_0.9267_1.png
                gene_name: KCNJ12
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 19 percent done.
KCNG4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.435967e-02	ci left: 4.286440e-01	ci right 4.481919e-01	k: 4384	n:10000
Cons ci ratio: 3.807373e-02	ci left: 5.046513e-01	ci right 5.243403e-01	k: 5145	n:10000
KS ci ratio: 7.909067e-02	ci left: 1.893422e-01	ci right 2.050346e-01	k: 1971	n:10000
KCNG4   10000 perm   2 sec   (6469 perm/sec)   p_kst 1.971000e-01   p_cons 5.145000e-01   p_joint 4.384000e-01

Outputting figure to mutsig2_images.part000000000088/KCNG4.7_1566_10000_0.1971_0.5145_0.4384.png
                gene_name: KCNG4
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 20 percent done.
KCNH4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.683977e-02	ci left: 6.715616e-01	ci right 6.899330e-01	k: 6808	n:10000
Cons ci ratio: 2.893336e-02	ci left: 6.378433e-01	ci right 6.566709e-01	k: 6473	n:10000
KS ci ratio: 4.461276e-02	ci left: 4.258518e-01	ci right 4.453858e-01	k: 4356	n:10000
KCNH4   10000 perm   2 sec   (5860 perm/sec)   p_kst 4.356000e-01   p_cons 6.473000e-01   p_joint 6.808000e-01

Outputting figure to mutsig2_images.part000000000088/KCNH4.7_3118_10000_0.4356_0.6473_0.6808.png
                gene_name: KCNH4
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 22 percent done.
KANK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.141594e-02	ci left: 3.580403e-01	ci right 3.770370e-01	k: 3675	n:10000
Cons ci ratio: 1.353332e-01	ci left: 7.213925e-02	ci right 8.270848e-02	k: 773	n:10000
KS ci ratio: 1.066901e-02	ci left: 9.259590e-01	ci right 9.359882e-01	k: 9311	n:10000
KANK2   10000 perm   2 sec   (6073 perm/sec)   p_kst 9.311000e-01   p_cons 7.730000e-02   p_joint 3.675000e-01

Joint ci ratio: 4.271154e-02	ci left: 2.899766e-01	ci right 3.026827e-01	k: 5926	n:20000
Cons ci ratio: 9.790809e-02	ci left: 7.055582e-02	ci right 7.786855e-02	k: 1483	n:20000
KS ci ratio: 7.979596e-03	ci left: 9.197294e-01	ci right 9.271469e-01	k: 18470	n:20000
KANK2   20000 perm   4 sec   (5409 perm/sec)   p_kst 9.235000e-01   p_cons 7.415000e-02   p_joint 2.963000e-01

Outputting figure to mutsig2_images.part000000000088/KANK2.6_2624_20000_0.9235_0.07415_0.2963.png
                gene_name: KANK2
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.074 
      ci_cons_bounds_left: 0.071 
     ci_cons_bounds_right: 0.078 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 23 percent done.
KCNH3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.639408e-02	ci left: 5.271675e-01	ci right 5.468110e-01	k: 5370	n:10000
KS ci ratio: 6.712391e-03	ci left: 9.681537e-01	ci right 9.747678e-01	k: 9716	n:10000
KCNH3   10000 perm   2 sec   (5691 perm/sec)   p_kst 9.716000e-01   p_cons 5.370000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000088/KCNH3.6_3312_10000_0.9716_0.537_1.png
                gene_name: KCNH3
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 25 percent done.
KCNC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.602602e-01	ci left: 9.594514e-03	ci right 1.389697e-02	k: 116	n:10000
Cons ci ratio: 1.481028e+00	ci left: 2.202202e-04	ci right 1.305486e-03	k: 6	n:10000
KS ci ratio: 1.609381e-01	ci left: 5.147727e-02	ci right 6.058353e-02	k: 559	n:10000
KCNC2   10000 perm   2 sec   (6247 perm/sec)   p_kst 5.590000e-02   p_cons 6.000000e-04   p_joint 1.160000e-02

Joint ci ratio: 3.744341e-01	ci left: 4.431766e-03	ci right 6.515982e-03	k: 108	n:20000
Cons ci ratio: 1.086832e+00	ci left: 3.100660e-04	ci right 1.047844e-03	k: 12	n:20000
KS ci ratio: 1.201260e-01	ci left: 4.750575e-02	ci right 5.362575e-02	k: 1010	n:20000
KCNC2   20000 perm   4 sec   (5593 perm/sec)   p_kst 5.050000e-02   p_cons 6.000000e-04   p_joint 5.400000e-03

Joint ci ratio: 4.894689e-01	ci left: 1.614063e-03	ci right 2.686024e-03	k: 63	n:30000
Cons ci ratio: 8.551005e-01	ci left: 4.072634e-04	ci right 1.029426e-03	k: 20	n:30000
KS ci ratio: 9.348168e-02	ci left: 5.277268e-02	ci right 5.798051e-02	k: 1660	n:30000
KCNC2   30000 perm   6 sec   (5370 perm/sec)   p_kst 5.533333e-02   p_cons 6.666667e-04   p_joint 2.100000e-03

Joint ci ratio: 3.634302e-01	ci left: 2.374173e-03	ci right 3.450008e-03	k: 115	n:40000
Cons ci ratio: 7.685158e-01	ci left: 4.045066e-04	ci right 9.224860e-04	k: 25	n:40000
KS ci ratio: 8.114545e-02	ci left: 5.288378e-02	ci right 5.738108e-02	k: 2204	n:40000
KCNC2   40000 perm   8 sec   (5138 perm/sec)   p_kst 5.510000e-02   p_cons 6.250000e-04   p_joint 2.875000e-03

Joint ci ratio: 3.284884e-01	ci left: 2.374263e-03	ci right 3.324917e-03	k: 141	n:50000
Cons ci ratio: 6.720391e-01	ci left: 4.543558e-04	ci right 9.267617e-04	k: 33	n:50000
KS ci ratio: 7.293308e-02	ci left: 5.262446e-02	ci right 5.662744e-02	k: 2730	n:50000
KCNC2   50000 perm   10 sec   (5011 perm/sec)   p_kst 5.460000e-02   p_cons 6.600000e-04   p_joint 2.820000e-03

Joint ci ratio: 3.700562e-01	ci left: 1.522126e-03	ci right 2.227456e-03	k: 111	n:60000
Cons ci ratio: 6.046524e-01	ci left: 4.904150e-04	ci right 9.269059e-04	k: 41	n:60000
KS ci ratio: 6.976863e-02	ci left: 4.823679e-02	ci right 5.174023e-02	k: 2998	n:60000
KCNC2   60000 perm   12 sec   (4917 perm/sec)   p_kst 4.996667e-02   p_cons 6.833333e-04   p_joint 1.850000e-03

Joint ci ratio: 1.507153e-01	ci left: 8.849648e-03	ci right 1.030572e-02	k: 669	n:70000
Cons ci ratio: 5.541697e-01	ci left: 5.179073e-04	ci right 9.253328e-04	k: 49	n:70000
KS ci ratio: 6.429242e-02	ci left: 4.880495e-02	ci right 5.206101e-02	k: 3529	n:70000
KCNC2   70000 perm   14 sec   (4839 perm/sec)   p_kst 5.041429e-02   p_cons 7.000000e-04   p_joint 9.557143e-03

Joint ci ratio: 1.758227e-01	ci left: 5.631921e-03	ci right 6.729354e-03	k: 493	n:80000
Cons ci ratio: 5.283877e-01	ci left: 5.071202e-04	ci right 8.806380e-04	k: 54	n:80000
KS ci ratio: 6.008746e-02	ci left: 4.899269e-02	ci right 5.204002e-02	k: 4040	n:80000
KCNC2   80000 perm   17 sec   (4762 perm/sec)   p_kst 5.050000e-02   p_cons 6.750000e-04   p_joint 6.162500e-03

Joint ci ratio: 1.248579e-01	ci left: 1.015651e-02	ci right 1.151974e-02	k: 974	n:90000
Cons ci ratio: 4.860379e-01	ci left: 5.476839e-04	ci right 9.079836e-04	k: 64	n:90000
KS ci ratio: 5.657326e-02	ci left: 4.920989e-02	ci right 5.208583e-02	k: 4557	n:90000
KCNC2   90000 perm   19 sec   (4694 perm/sec)   p_kst 5.063333e-02   p_cons 7.111111e-04   p_joint 1.082222e-02

Joint ci ratio: 1.482832e-01	ci left: 6.425175e-03	ci right 7.463733e-03	k: 693	n:100000
Cons ci ratio: 4.683633e-01	ci left: 5.368996e-04	ci right 8.731591e-04	k: 69	n:100000
KS ci ratio: 5.384081e-02	ci left: 4.898303e-02	ci right 5.170313e-02	k: 5033	n:100000
KCNC2   100000 perm   22 sec   (4621 perm/sec)   p_kst 5.033000e-02   p_cons 6.900000e-04   p_joint 6.930000e-03

Joint ci ratio: 1.429368e-01	ci left: 6.305307e-03	ci right 7.284605e-03	k: 746	n:110000
Cons ci ratio: 4.436932e-01	ci left: 5.524673e-04	ci right 8.748034e-04	k: 77	n:110000
KS ci ratio: 5.131766e-02	ci left: 4.907858e-02	ci right 5.167246e-02	k: 5540	n:110000
KCNC2   110000 perm   24 sec   (4553 perm/sec)   p_kst 5.036364e-02   p_cons 7.000000e-04   p_joint 6.781818e-03

Joint ci ratio: 1.390069e-01	ci left: 6.125520e-03	ci right 7.048568e-03	k: 789	n:120000
Cons ci ratio: 4.275556e-01	ci left: 5.509451e-04	ci right 8.573538e-04	k: 83	n:120000
KS ci ratio: 4.918319e-02	ci left: 4.903715e-02	ci right 5.151797e-02	k: 6032	n:120000
KCNC2   120000 perm   27 sec   (4485 perm/sec)   p_kst 5.026667e-02   p_cons 6.916667e-04   p_joint 6.575000e-03

Joint ci ratio: 1.420589e-01	ci left: 5.409261e-03	ci right 6.243784e-03	k: 756	n:130000
Cons ci ratio: 4.041694e-01	ci left: 5.774453e-04	ci right 8.763239e-04	k: 93	n:130000
KS ci ratio: 4.726036e-02	ci left: 4.907246e-02	ci right 5.145535e-02	k: 6533	n:130000
KCNC2   130000 perm   29 sec   (4415 perm/sec)   p_kst 5.025385e-02   p_cons 7.153846e-04   p_joint 5.815385e-03

Joint ci ratio: 1.398763e-01	ci left: 5.188225e-03	ci right 5.975322e-03	k: 780	n:140000
Cons ci ratio: 3.958398e-01	ci left: 5.618953e-04	ci right 8.451626e-04	k: 97	n:140000
KS ci ratio: 4.551269e-02	ci left: 4.917500e-02	ci right 5.147224e-02	k: 7044	n:140000
KCNC2   140000 perm   32 sec   (4350 perm/sec)   p_kst 5.031429e-02   p_cons 6.928571e-04   p_joint 5.571429e-03

Joint ci ratio: 1.021609e-01	ci left: 9.223169e-03	ci right 1.022259e-02	k: 1457	n:150000
Cons ci ratio: 3.788243e-01	ci left: 5.785959e-04	ci right 8.546297e-04	k: 106	n:150000
KS ci ratio: 4.397931e-02	ci left: 4.919271e-02	ci right 5.141138e-02	k: 7544	n:150000
KCNC2   150000 perm   35 sec   (4285 perm/sec)   p_kst 5.029333e-02   p_cons 7.066667e-04   p_joint 9.713333e-03

Joint ci ratio: 1.047226e-01	ci left: 8.226403e-03	ci right 9.141534e-03	k: 1388	n:160000
Cons ci ratio: 3.638298e-01	ci left: 5.934372e-04	ci right 8.626884e-04	k: 115	n:160000
KS ci ratio: 4.267780e-02	ci left: 4.901755e-02	ci right 5.116129e-02	k: 8013	n:160000
KCNC2   160000 perm   38 sec   (4227 perm/sec)   p_kst 5.008125e-02   p_cons 7.187500e-04   p_joint 8.675000e-03

Joint ci ratio: 1.055571e-01	ci left: 7.622090e-03	ci right 8.477168e-03	k: 1367	n:170000
Cons ci ratio: 3.436743e-01	ci left: 6.335721e-04	ci right 9.015744e-04	k: 129	n:170000
KS ci ratio: 4.138788e-02	ci left: 4.908521e-02	ci right 5.116547e-02	k: 8520	n:170000
KCNC2   170000 perm   41 sec   (4166 perm/sec)   p_kst 5.011765e-02   p_cons 7.588235e-04   p_joint 8.041176e-03

Joint ci ratio: 9.409428e-02	ci left: 9.100416e-03	ci right 1.000437e-02	k: 1718	n:180000
Cons ci ratio: 3.372524e-01	ci left: 6.237762e-04	ci right 8.816317e-04	k: 134	n:180000
KS ci ratio: 4.030472e-02	ci left: 4.892061e-02	ci right 5.093837e-02	k: 8986	n:180000
KCNC2   180000 perm   44 sec   (4103 perm/sec)   p_kst 4.992222e-02   p_cons 7.444444e-04   p_joint 9.544444e-03

Joint ci ratio: 9.473181e-02	ci left: 8.508268e-03	ci right 9.359448e-03	k: 1696	n:190000
Cons ci ratio: 3.276826e-01	ci left: 6.295376e-04	ci right 8.808363e-04	k: 142	n:190000
KS ci ratio: 3.923905e-02	ci left: 4.892519e-02	ci right 5.088857e-02	k: 9481	n:190000
KCNC2   190000 perm   47 sec   (4045 perm/sec)   p_kst 4.990000e-02   p_cons 7.473684e-04   p_joint 8.926316e-03

Joint ci ratio: 9.223723e-02	ci left: 8.536989e-03	ci right 9.367338e-03	k: 1789	n:200000
Cons ci ratio: 3.188838e-01	ci left: 6.348158e-04	ci right 8.800286e-04	k: 150	n:200000
KS ci ratio: 3.824561e-02	ci left: 4.894977e-02	ci right 5.086331e-02	k: 9980	n:200000
KCNC2   200000 perm   50 sec   (3986 perm/sec)   p_kst 4.990000e-02   p_cons 7.500000e-04   p_joint 8.945000e-03

Joint ci ratio: 9.259681e-02	ci left: 8.069901e-03	ci right 8.858043e-03	k: 1776	n:210000
Cons ci ratio: 3.078647e-01	ci left: 6.528504e-04	ci right 8.946071e-04	k: 161	n:210000
KS ci ratio: 3.742559e-02	ci left: 4.871771e-02	ci right 5.058046e-02	k: 10425	n:210000
KCNC2   210000 perm   53 sec   (3932 perm/sec)   p_kst 4.964286e-02   p_cons 7.666667e-04   p_joint 8.457143e-03

Joint ci ratio: 9.434285e-02	ci left: 7.418861e-03	ci right 8.157833e-03	k: 1712	n:220000
Cons ci ratio: 2.970562e-01	ci left: 6.735843e-04	ci right 9.126125e-04	k: 173	n:220000
KS ci ratio: 3.655187e-02	ci left: 4.877301e-02	ci right 5.059342e-02	k: 10929	n:220000
KCNC2   220000 perm   57 sec   (3876 perm/sec)   p_kst 4.967727e-02   p_cons 7.863636e-04   p_joint 7.781818e-03

Joint ci ratio: 8.780475e-02	ci left: 8.213908e-03	ci right 8.972468e-03	k: 1975	n:230000
Cons ci ratio: 2.880876e-01	ci left: 6.886160e-04	ci right 9.242580e-04	k: 184	n:230000
KS ci ratio: 3.576296e-02	ci left: 4.875499e-02	ci right 5.053464e-02	k: 11417	n:230000
KCNC2   230000 perm   60 sec   (3823 perm/sec)   p_kst 4.963913e-02   p_cons 8.000000e-04   p_joint 8.586957e-03

Joint ci ratio: 8.678589e-02	ci left: 8.063192e-03	ci right 8.798754e-03	k: 2022	n:240000
Cons ci ratio: 2.827879e-01	ci left: 6.870026e-04	ci right 9.169963e-04	k: 191	n:240000
KS ci ratio: 3.501219e-02	ci left: 4.876778e-02	ci right 5.050978e-02	k: 11912	n:240000
KCNC2   240000 perm   64 sec   (3773 perm/sec)   p_kst 4.963333e-02   p_cons 7.958333e-04   p_joint 8.425000e-03

Joint ci ratio: 9.150033e-02	ci left: 6.954391e-03	ci right 7.625108e-03	k: 1821	n:250000
Cons ci ratio: 2.806070e-01	ci left: 6.706740e-04	ci right 8.931633e-04	k: 194	n:250000
KS ci ratio: 3.431991e-02	ci left: 4.874421e-02	ci right 5.045025e-02	k: 12398	n:250000
KCNC2   250000 perm   67 sec   (3718 perm/sec)   p_kst 4.959200e-02   p_cons 7.760000e-04   p_joint 7.284000e-03

Joint ci ratio: 8.493047e-02	ci left: 7.781620e-03	ci right 8.475565e-03	k: 2112	n:260000
Cons ci ratio: 2.757025e-01	ci left: 6.699242e-04	ci right 8.876070e-04	k: 201	n:260000
KS ci ratio: 3.363418e-02	ci left: 4.881433e-02	ci right 5.048803e-02	k: 12908	n:260000
KCNC2   260000 perm   71 sec   (3671 perm/sec)   p_kst 4.964615e-02   p_cons 7.730769e-04   p_joint 8.123077e-03

Joint ci ratio: 7.181449e-02	ci left: 1.052267e-02	ci right 1.131011e-02	k: 2946	n:270000
Cons ci ratio: 2.697580e-01	ci left: 6.761668e-04	ci right 8.903392e-04	k: 210	n:270000
KS ci ratio: 3.293635e-02	ci left: 4.902656e-02	ci right 5.067201e-02	k: 13458	n:270000
KCNC2   270000 perm   75 sec   (3610 perm/sec)   p_kst 4.984444e-02   p_cons 7.777778e-04   p_joint 1.091111e-02

Joint ci ratio: 6.585408e-02	ci left: 1.208472e-02	ci right 1.291113e-02	k: 3498	n:280000
Cons ci ratio: 2.635832e-01	ci left: 6.853456e-04	ci right 8.966368e-04	k: 220	n:280000
KS ci ratio: 3.238008e-02	ci left: 4.893335e-02	ci right 5.054741e-02	k: 13926	n:280000
KCNC2   280000 perm   79 sec   (3557 perm/sec)   p_kst 4.973571e-02   p_cons 7.857143e-04   p_joint 1.249286e-02

Joint ci ratio: 6.459117e-02	ci left: 1.213611e-02	ci right 1.294953e-02	k: 3636	n:290000
Cons ci ratio: 2.589381e-01	ci left: 6.874929e-04	ci right 8.951069e-04	k: 228	n:290000
KS ci ratio: 3.179649e-02	ci left: 4.900764e-02	ci right 5.059448e-02	k: 14441	n:290000
KCNC2   290000 perm   83 sec   (3503 perm/sec)   p_kst 4.979655e-02   p_cons 7.862069e-04   p_joint 1.253793e-02

Joint ci ratio: 6.626616e-02	ci left: 1.114776e-02	ci right 1.191505e-02	k: 3458	n:300000
Cons ci ratio: 2.567076e-01	ci left: 6.770477e-04	ci right 8.794638e-04	k: 232	n:300000
KS ci ratio: 3.126427e-02	ci left: 4.901435e-02	ci right 5.057436e-02	k: 14937	n:300000
KCNC2   300000 perm   87 sec   (3460 perm/sec)   p_kst 4.979000e-02   p_cons 7.733333e-04   p_joint 1.152667e-02

Joint ci ratio: 6.520059e-02	ci left: 1.114985e-02	ci right 1.190448e-02	k: 3572	n:310000
Cons ci ratio: 2.539979e-01	ci left: 6.703039e-04	ci right 8.682536e-04	k: 237	n:310000
KS ci ratio: 3.072962e-02	ci left: 4.910729e-02	ci right 5.064307e-02	k: 15460	n:310000
KCNC2   310000 perm   91 sec   (3420 perm/sec)   p_kst 4.987097e-02   p_cons 7.645161e-04   p_joint 1.152258e-02

Joint ci ratio: 7.059412e-02	ci left: 9.206704e-03	ci right 9.883473e-03	k: 3053	n:320000
Cons ci ratio: 2.508562e-01	ci left: 6.669207e-04	ci right 8.610546e-04	k: 243	n:320000
KS ci ratio: 3.025738e-02	ci left: 4.908295e-02	ci right 5.059396e-02	k: 15947	n:320000
KCNC2   320000 perm   95 sec   (3380 perm/sec)   p_kst 4.983438e-02   p_cons 7.593750e-04   p_joint 9.540625e-03

Joint ci ratio: 7.034912e-02	ci left: 8.993170e-03	ci right 9.651854e-03	k: 3075	n:330000
Cons ci ratio: 2.458676e-01	ci left: 6.751285e-04	ci right 8.671467e-04	k: 253	n:330000
KS ci ratio: 2.979291e-02	ci left: 4.910238e-02	ci right 5.059039e-02	k: 16448	n:330000
KCNC2   330000 perm   99 sec   (3341 perm/sec)   p_kst 4.984242e-02   p_cons 7.666667e-04   p_joint 9.318182e-03

Joint ci ratio: 7.163901e-02	ci left: 8.416567e-03	ci right 9.044790e-03	k: 2967	n:340000
Cons ci ratio: 2.439556e-01	ci left: 6.663141e-04	ci right 8.541282e-04	k: 257	n:340000
KS ci ratio: 2.937290e-02	ci left: 4.904489e-02	ci right 5.050985e-02	k: 16923	n:340000
KCNC2   340000 perm   103 sec   (3298 perm/sec)   p_kst 4.977353e-02   p_cons 7.558824e-04   p_joint 8.726471e-03

Joint ci ratio: 7.046054e-02	ci left: 8.456738e-03	ci right 9.077151e-03	k: 3067	n:350000
Cons ci ratio: 2.393601e-01	ci left: 6.741185e-04	ci right 8.600222e-04	k: 267	n:350000
KS ci ratio: 2.891252e-02	ci left: 4.917811e-02	ci right 5.062364e-02	k: 17464	n:350000
KCNC2   350000 perm   107 sec   (3262 perm/sec)   p_kst 4.989714e-02   p_cons 7.628571e-04   p_joint 8.762857e-03

Joint ci ratio: 6.970556e-02	ci left: 8.404670e-03	ci right 9.014389e-03	k: 3134	n:360000
Cons ci ratio: 2.354390e-01	ci left: 6.789063e-04	ci right 8.626166e-04	k: 276	n:360000
KS ci ratio: 2.853489e-02	ci left: 4.909992e-02	ci right 5.052400e-02	k: 17931	n:360000
KCNC2   360000 perm   112 sec   (3226 perm/sec)   p_kst 4.980833e-02   p_cons 7.666667e-04   p_joint 8.705556e-03

Joint ci ratio: 6.879036e-02	ci left: 8.400612e-03	ci right 9.001715e-03	k: 3218	n:370000
Cons ci ratio: 2.333433e-01	ci left: 6.732772e-04	ci right 8.536086e-04	k: 281	n:370000
KS ci ratio: 2.812987e-02	ci left: 4.916569e-02	ci right 5.057110e-02	k: 18450	n:370000
KCNC2   370000 perm   116 sec   (3190 perm/sec)   p_kst 4.986486e-02   p_cons 7.594595e-04   p_joint 8.697297e-03

Joint ci ratio: 6.978905e-02	ci left: 7.946739e-03	ci right 8.523955e-03	k: 3128	n:380000
Cons ci ratio: 2.297062e-01	ci left: 6.778702e-04	ci right 8.562005e-04	k: 290	n:380000
KS ci ratio: 2.778635e-02	ci left: 4.907650e-02	ci right 5.046196e-02	k: 18911	n:380000
KCNC2   380000 perm   120 sec   (3154 perm/sec)   p_kst 4.976579e-02   p_cons 7.631579e-04   p_joint 8.231579e-03

Joint ci ratio: 6.956155e-02	ci left: 7.795864e-03	ci right 8.360200e-03	k: 3149	n:390000
Cons ci ratio: 2.273746e-01	ci left: 6.749927e-04	ci right 8.505107e-04	k: 296	n:390000
KS ci ratio: 2.743650e-02	ci left: 4.905567e-02	ci right 5.042283e-02	k: 19397	n:390000
KCNC2   390000 perm   125 sec   (3122 perm/sec)   p_kst 4.973590e-02   p_cons 7.589744e-04   p_joint 8.074359e-03

Joint ci ratio: 6.873769e-02	ci left: 7.787681e-03	ci right 8.344481e-03	k: 3225	n:400000
Cons ci ratio: 2.254852e-01	ci left: 6.699087e-04	ci right 8.424560e-04	k: 301	n:400000
KS ci ratio: 2.709380e-02	ci left: 4.905585e-02	ci right 5.040568e-02	k: 19891	n:400000
KCNC2   400000 perm   129 sec   (3090 perm/sec)   p_kst 4.972750e-02   p_cons 7.525000e-04   p_joint 8.062500e-03

Joint ci ratio: 7.214724e-02	ci left: 6.890775e-03	ci right 7.408909e-03	k: 2930	n:410000
Cons ci ratio: 2.229167e-01	ci left: 6.696838e-04	ci right 8.399388e-04	k: 308	n:410000
KS ci ratio: 2.650939e-02	ci left: 4.996015e-02	ci right 5.130475e-02	k: 20758	n:410000
KCNC2   410000 perm   134 sec   (3060 perm/sec)   p_kst 5.062927e-02   p_cons 7.512195e-04   p_joint 7.146341e-03

Joint ci ratio: 7.125315e-02	ci left: 6.899742e-03	ci right 7.411855e-03	k: 3004	n:420000
Cons ci ratio: 2.190509e-01	ci left: 6.784802e-04	ci right 8.475775e-04	k: 319	n:420000
KS ci ratio: 2.619341e-02	ci left: 4.996271e-02	ci right 5.129112e-02	k: 21262	n:420000
KCNC2   420000 perm   139 sec   (3028 perm/sec)   p_kst 5.062381e-02   p_cons 7.595238e-04   p_joint 7.152381e-03

Joint ci ratio: 7.050692e-02	ci left: 6.885480e-03	ci right 7.390963e-03	k: 3068	n:430000
Cons ci ratio: 2.160337e-01	ci left: 6.824917e-04	ci right 8.499350e-04	k: 328	n:430000
KS ci ratio: 2.591480e-02	ci left: 4.986817e-02	ci right 5.117975e-02	k: 21724	n:430000
KCNC2   430000 perm   143 sec   (2998 perm/sec)   p_kst 5.052093e-02   p_cons 7.627907e-04   p_joint 7.134884e-03

Joint ci ratio: 7.027098e-02	ci left: 6.775866e-03	ci right 7.271569e-03	k: 3089	n:440000
Cons ci ratio: 2.134540e-01	ci left: 6.841846e-04	ci right 8.497764e-04	k: 336	n:440000
KS ci ratio: 2.560603e-02	ci left: 4.992258e-02	ci right 5.121971e-02	k: 22250	n:440000
KCNC2   440000 perm   148 sec   (2969 perm/sec)   p_kst 5.056818e-02   p_cons 7.636364e-04   p_joint 7.020455e-03

Joint ci ratio: 6.942198e-02	ci left: 6.791232e-03	ci right 7.281814e-03	k: 3165	n:450000
Cons ci ratio: 2.112712e-01	ci left: 6.837087e-04	ci right 8.472742e-04	k: 343	n:450000
KS ci ratio: 2.529400e-02	ci left: 5.002767e-02	ci right 5.131146e-02	k: 22800	n:450000
KCNC2   450000 perm   153 sec   (2940 perm/sec)   p_kst 5.066667e-02   p_cons 7.622222e-04   p_joint 7.033333e-03

Joint ci ratio: 6.742947e-02	ci left: 7.047468e-03	ci right 7.541378e-03	k: 3354	n:460000
Cons ci ratio: 2.085603e-01	ci left: 6.873824e-04	ci right 8.494472e-04	k: 352	n:460000
KS ci ratio: 2.501964e-02	ci left: 5.002671e-02	ci right 5.129635e-02	k: 23303	n:460000
KCNC2   460000 perm   158 sec   (2911 perm/sec)   p_kst 5.065870e-02   p_cons 7.652174e-04   p_joint 7.291304e-03

Joint ci ratio: 6.669785e-02	ci left: 7.052328e-03	ci right 7.541009e-03	k: 3428	n:470000
Cons ci ratio: 2.065228e-01	ci left: 6.868768e-04	ci right 8.470405e-04	k: 359	n:470000
KS ci ratio: 2.475238e-02	ci left: 5.003221e-02	ci right 5.128824e-02	k: 23809	n:470000
KCNC2   470000 perm   163 sec   (2883 perm/sec)   p_kst 5.065745e-02   p_cons 7.638298e-04   p_joint 7.293617e-03

Joint ci ratio: 6.618011e-02	ci left: 7.016032e-03	ci right 7.498278e-03	k: 3482	n:480000
Cons ci ratio: 2.034374e-01	ci left: 6.943076e-04	ci right 8.534847e-04	k: 370	n:480000
KS ci ratio: 2.448661e-02	ci left: 5.006447e-02	ci right 5.130763e-02	k: 24328	n:480000
KCNC2   480000 perm   169 sec   (2849 perm/sec)   p_kst 5.068333e-02   p_cons 7.708333e-04   p_joint 7.254167e-03

Joint ci ratio: 5.219622e-02	ci left: 1.108247e-02	ci right 1.167843e-02	k: 5575	n:490000
Cons ci ratio: 2.010136e-01	ci left: 6.975755e-04	ci right 8.553627e-04	k: 379	n:490000
KS ci ratio: 2.413878e-02	ci left: 5.045464e-02	ci right 5.168945e-02	k: 25024	n:490000
KCNC2   490000 perm   174 sec   (2821 perm/sec)   p_kst 5.106939e-02   p_cons 7.734694e-04   p_joint 1.137755e-02

Joint ci ratio: 4.824812e-02	ci left: 1.271552e-02	ci right 1.334614e-02	k: 6514	n:500000
Cons ci ratio: 1.984193e-01	ci left: 7.026241e-04	ci right 8.592540e-04	k: 389	n:500000
KS ci ratio: 2.388766e-02	ci left: 5.049522e-02	ci right 5.171799e-02	k: 25552	n:500000
KCNC2   500000 perm   179 sec   (2793 perm/sec)   p_kst 5.110400e-02   p_cons 7.780000e-04   p_joint 1.302800e-02

Joint ci ratio: 4.776293e-02	ci left: 1.272385e-02	ci right 1.334837e-02	k: 6647	n:510000
Cons ci ratio: 1.966624e-01	ci left: 7.018938e-04	ci right 8.568094e-04	k: 396	n:510000
KS ci ratio: 2.366382e-02	ci left: 5.045433e-02	ci right 5.166450e-02	k: 26039	n:510000
KCNC2   510000 perm   185 sec   (2764 perm/sec)   p_kst 5.105686e-02   p_cons 7.764706e-04   p_joint 1.303333e-02

Joint ci ratio: 4.804796e-02	ci left: 1.233470e-02	ci right 1.294383e-02	k: 6571	n:520000
Cons ci ratio: 1.954361e-01	ci left: 6.975391e-04	ci right 8.504193e-04	k: 401	n:520000
KS ci ratio: 2.344290e-02	ci left: 5.042845e-02	ci right 5.162656e-02	k: 26533	n:520000
KCNC2   520000 perm   190 sec   (2738 perm/sec)   p_kst 5.102500e-02   p_cons 7.711538e-04   p_joint 1.263654e-02

Joint ci ratio: 4.759751e-02	ci left: 1.233500e-02	ci right 1.293827e-02	k: 6696	n:530000
Cons ci ratio: 1.937565e-01	ci left: 6.969420e-04	ci right 8.482239e-04	k: 408	n:530000
KS ci ratio: 2.321990e-02	ci left: 5.043738e-02	ci right 5.162414e-02	k: 27045	n:530000
KCNC2   530000 perm   195 sec   (2712 perm/sec)   p_kst 5.102830e-02   p_cons 7.698113e-04   p_joint 1.263396e-02

Joint ci ratio: 4.643079e-02	ci left: 1.272520e-02	ci right 1.333190e-02	k: 7034	n:540000
Cons ci ratio: 1.921196e-01	ci left: 6.963725e-04	ci right 8.461045e-04	k: 415	n:540000
KS ci ratio: 2.299919e-02	ci left: 5.046260e-02	ci right 5.163852e-02	k: 27566	n:540000
KCNC2   540000 perm   201 sec   (2688 perm/sec)   p_kst 5.104815e-02   p_cons 7.685185e-04   p_joint 1.302593e-02

Joint ci ratio: 4.593950e-02	ci left: 1.276521e-02	ci right 1.336721e-02	k: 7185	n:550000
Cons ci ratio: 1.909758e-01	ci left: 6.923660e-04	ci right 8.402473e-04	k: 420	n:550000
KS ci ratio: 2.277569e-02	ci left: 5.052493e-02	ci right 5.169071e-02	k: 28108	n:550000
KCNC2   550000 perm   206 sec   (2664 perm/sec)   p_kst 5.110545e-02   p_cons 7.636364e-04   p_joint 1.306364e-02

Joint ci ratio: 6.169672e-02	ci left: 6.936262e-03	ci right 7.379574e-03	k: 4007	n:560000
Cons ci ratio: 1.889664e-01	ci left: 6.953095e-04	ci right 8.420776e-04	k: 429	n:560000
KS ci ratio: 2.199625e-02	ci left: 5.307903e-02	ci right 5.426131e-02	k: 30054	n:560000
KCNC2   560000 perm   212 sec   (2640 perm/sec)   p_kst 5.366786e-02   p_cons 7.660714e-04   p_joint 7.155357e-03

Joint ci ratio: 6.133946e-02	ci left: 6.895756e-03	ci right 7.333837e-03	k: 4054	n:570000
Cons ci ratio: 1.874470e-01	ci left: 6.948132e-04	ci right 8.401630e-04	k: 436	n:570000
KS ci ratio: 2.179331e-02	ci left: 5.312665e-02	ci right 5.429894e-02	k: 30615	n:570000
KCNC2   570000 perm   218 sec   (2616 perm/sec)   p_kst 5.371053e-02   p_cons 7.649123e-04   p_joint 7.112281e-03

Joint ci ratio: 5.695299e-02	ci left: 7.870917e-03	ci right 8.334016e-03	k: 4698	n:580000
Cons ci ratio: 1.859636e-01	ci left: 6.943385e-04	ci right 8.383099e-04	k: 443	n:580000
KS ci ratio: 2.160796e-02	ci left: 5.311608e-02	ci right 5.427804e-02	k: 31143	n:580000
KCNC2   580000 perm   224 sec   (2593 perm/sec)   p_kst 5.369483e-02   p_cons 7.637931e-04   p_joint 8.100000e-03

Joint ci ratio: 5.843545e-02	ci left: 7.348235e-03	ci right 7.792214e-03	k: 4465	n:590000
Cons ci ratio: 1.851321e-01	ci left: 6.890346e-04	ci right 8.311957e-04	k: 447	n:590000
KS ci ratio: 2.141726e-02	ci left: 5.315312e-02	ci right 5.430550e-02	k: 31699	n:590000
KCNC2   590000 perm   230 sec   (2570 perm/sec)   p_kst 5.372712e-02   p_cons 7.576271e-04   p_joint 7.567797e-03

Joint ci ratio: 5.792521e-02	ci left: 7.355516e-03	ci right 7.795925e-03	k: 4544	n:600000
Cons ci ratio: 1.828998e-01	ci left: 6.950398e-04	ci right 8.365191e-04	k: 458	n:600000
KS ci ratio: 2.122492e-02	ci left: 5.322048e-02	ci right 5.436383e-02	k: 32274	n:600000
KCNC2   600000 perm   235 sec   (2548 perm/sec)   p_kst 5.379000e-02   p_cons 7.633333e-04   p_joint 7.573333e-03

Joint ci ratio: 5.846254e-02	ci left: 7.102437e-03	ci right 7.531770e-03	k: 4462	n:610000
Cons ci ratio: 1.809390e-01	ci left: 6.992928e-04	ci right 8.399446e-04	k: 468	n:610000
KS ci ratio: 2.104952e-02	ci left: 5.322858e-02	ci right 5.436255e-02	k: 32814	n:610000
KCNC2   610000 perm   242 sec   (2525 perm/sec)   p_kst 5.379344e-02   p_cons 7.672131e-04   p_joint 7.314754e-03

Joint ci ratio: 5.640823e-02	ci left: 7.510951e-03	ci right 7.948506e-03	k: 4791	n:620000
Cons ci ratio: 1.799826e-01	ci left: 6.957140e-04	ci right 8.348257e-04	k: 473	n:620000
KS ci ratio: 2.088965e-02	ci left: 5.318189e-02	ci right 5.430615e-02	k: 33320	n:620000
KCNC2   620000 perm   248 sec   (2502 perm/sec)   p_kst 5.374194e-02   p_cons 7.629032e-04   p_joint 7.727419e-03

Joint ci ratio: 5.597202e-02	ci left: 7.509105e-03	ci right 7.943060e-03	k: 4866	n:630000
Cons ci ratio: 1.784826e-01	ci left: 6.967997e-04	ci right 8.348420e-04	k: 481	n:630000
KS ci ratio: 2.072237e-02	ci left: 5.319042e-02	ci right 5.430575e-02	k: 33860	n:630000
KCNC2   630000 perm   254 sec   (2481 perm/sec)   p_kst 5.374603e-02   p_cons 7.634921e-04   p_joint 7.723810e-03

Joint ci ratio: 5.634997e-02	ci left: 7.293156e-03	ci right 7.717570e-03	k: 4802	n:640000
Cons ci ratio: 1.773823e-01	ci left: 6.948696e-04	ci right 8.315897e-04	k: 487	n:640000
KS ci ratio: 2.055430e-02	ci left: 5.322204e-02	ci right 5.432888e-02	k: 34415	n:640000
KCNC2   640000 perm   260 sec   (2461 perm/sec)   p_kst 5.377344e-02   p_cons 7.609375e-04   p_joint 7.503125e-03

Joint ci ratio: 5.589201e-02	ci left: 7.300788e-03	ci right 7.722081e-03	k: 4881	n:650000
Cons ci ratio: 1.761237e-01	ci left: 6.944720e-04	ci right 8.300413e-04	k: 494	n:650000
KS ci ratio: 2.038072e-02	ci left: 5.330019e-02	ci right 5.439918e-02	k: 35001	n:650000
KCNC2   650000 perm   266 sec   (2441 perm/sec)   p_kst 5.384769e-02   p_cons 7.600000e-04   p_joint 7.509231e-03

Joint ci ratio: 5.689588e-02	ci left: 6.937683e-03	ci right 7.345449e-03	k: 4712	n:660000
Cons ci ratio: 1.748915e-01	ci left: 6.940899e-04	ci right 8.285364e-04	k: 501	n:660000
KS ci ratio: 2.022107e-02	ci left: 5.332775e-02	ci right 5.441860e-02	k: 35555	n:660000
KCNC2   660000 perm   273 sec   (2421 perm/sec)   p_kst 5.387121e-02   p_cons 7.590909e-04   p_joint 7.139394e-03

Joint ci ratio: 5.650782e-02	ci left: 6.929774e-03	ci right 7.334207e-03	k: 4777	n:670000
Cons ci ratio: 1.740273e-01	ci left: 6.908670e-04	ci right 8.239586e-04	k: 506	n:670000
KS ci ratio: 2.007334e-02	ci left: 5.331293e-02	ci right 5.439541e-02	k: 36081	n:670000
KCNC2   670000 perm   279 sec   (2401 perm/sec)   p_kst 5.385224e-02   p_cons 7.552239e-04   p_joint 7.129851e-03

Joint ci ratio: 5.611593e-02	ci left: 6.925007e-03	ci right 7.326268e-03	k: 4844	n:680000
Cons ci ratio: 1.736858e-01	ci left: 6.835202e-04	ci right 8.149109e-04	k: 508	n:680000
KS ci ratio: 1.992765e-02	ci left: 5.330442e-02	ci right 5.437879e-02	k: 36611	n:680000
KCNC2   680000 perm   286 sec   (2381 perm/sec)   p_kst 5.383971e-02   p_cons 7.470588e-04   p_joint 7.123529e-03

Joint ci ratio: 5.672931e-02	ci left: 6.677451e-03	ci right 7.068735e-03	k: 4741	n:690000
Cons ci ratio: 1.725037e-01	ci left: 6.833195e-04	ci right 8.136846e-04	k: 515	n:690000
KS ci ratio: 1.977580e-02	ci left: 5.334380e-02	ci right 5.441068e-02	k: 37174	n:690000
KCNC2   690000 perm   292 sec   (2361 perm/sec)   p_kst 5.387536e-02   p_cons 7.463768e-04   p_joint 6.871014e-03

Joint ci ratio: 5.630924e-02	ci left: 6.682055e-03	ci right 7.070615e-03	k: 4812	n:700000
Cons ci ratio: 1.713455e-01	ci left: 6.831275e-04	ci right 8.124904e-04	k: 522	n:700000
KS ci ratio: 1.962600e-02	ci left: 5.338919e-02	ci right 5.444879e-02	k: 37742	n:700000
KCNC2   700000 perm   299 sec   (2343 perm/sec)   p_kst 5.391714e-02   p_cons 7.457143e-04   p_joint 6.874286e-03

Joint ci ratio: 5.397845e-02	ci left: 7.174163e-03	ci right 7.573534e-03	k: 5234	n:710000
Cons ci ratio: 1.698897e-01	ci left: 6.856408e-04	ci right 8.142636e-04	k: 531	n:710000
KS ci ratio: 1.948439e-02	ci left: 5.340809e-02	ci right 5.446034e-02	k: 38292	n:710000
KCNC2   710000 perm   306 sec   (2324 perm/sec)   p_kst 5.393239e-02   p_cons 7.478873e-04   p_joint 7.371831e-03

Joint ci ratio: 5.361110e-02	ci left: 7.173177e-03	ci right 7.569691e-03	k: 5306	n:720000
Cons ci ratio: 1.681597e-01	ci left: 6.907497e-04	ci right 8.188777e-04	k: 542	n:720000
KS ci ratio: 1.934975e-02	ci left: 5.340576e-02	ci right 5.445061e-02	k: 38827	n:720000
KCNC2   720000 perm   313 sec   (2304 perm/sec)   p_kst 5.392639e-02   p_cons 7.527778e-04   p_joint 7.369444e-03

Joint ci ratio: 5.328610e-02	ci left: 7.162764e-03	ci right 7.556229e-03	k: 5371	n:730000
Cons ci ratio: 1.670863e-01	ci left: 6.904741e-04	ci right 8.176512e-04	k: 549	n:730000
KS ci ratio: 1.922174e-02	ci left: 5.338306e-02	ci right 5.442048e-02	k: 39347	n:730000
KCNC2   730000 perm   319 sec   (2285 perm/sec)   p_kst 5.390000e-02   p_cons 7.520548e-04   p_joint 7.357534e-03

Joint ci ratio: 5.292771e-02	ci left: 7.163309e-03	ci right 7.554076e-03	k: 5444	n:740000
Cons ci ratio: 1.660331e-01	ci left: 6.902086e-04	ci right 8.164552e-04	k: 556	n:740000
KS ci ratio: 1.909168e-02	ci left: 5.338521e-02	ci right 5.441558e-02	k: 39885	n:740000
KCNC2   740000 perm   326 sec   (2267 perm/sec)   p_kst 5.389865e-02   p_cons 7.513514e-04   p_joint 7.356757e-03

Joint ci ratio: 5.249029e-02	ci left: 7.187534e-03	ci right 7.576285e-03	k: 5535	n:750000
Cons ci ratio: 1.649996e-01	ci left: 6.899525e-04	ci right 8.152888e-04	k: 563	n:750000
KS ci ratio: 1.895580e-02	ci left: 5.343246e-02	ci right 5.445632e-02	k: 40457	n:750000
KCNC2   750000 perm   333 sec   (2249 perm/sec)   p_kst 5.394267e-02   p_cons 7.506667e-04   p_joint 7.380000e-03

Joint ci ratio: 5.262709e-02	ci left: 7.056591e-03	ci right 7.439284e-03	k: 5507	n:760000
Cons ci ratio: 1.645630e-01	ci left: 6.846586e-04	ci right 8.086715e-04	k: 566	n:760000
KS ci ratio: 1.882957e-02	ci left: 5.344181e-02	ci right 5.445896e-02	k: 41001	n:760000
KCNC2   760000 perm   341 sec   (2231 perm/sec)   p_kst 5.394868e-02   p_cons 7.447368e-04   p_joint 7.246053e-03

Joint ci ratio: 5.305817e-02	ci left: 6.852153e-03	ci right 7.226895e-03	k: 5419	n:770000
Cons ci ratio: 1.631305e-01	ci left: 6.882215e-04	ci right 8.116882e-04	k: 576	n:770000
KS ci ratio: 1.870606e-02	ci left: 5.344965e-02	ci right 5.446020e-02	k: 41544	n:770000
KCNC2   770000 perm   348 sec   (2214 perm/sec)   p_kst 5.395325e-02   p_cons 7.480519e-04   p_joint 7.037662e-03

Joint ci ratio: 5.152707e-02	ci left: 7.175554e-03	ci right 7.556323e-03	k: 5744	n:780000
Cons ci ratio: 1.618728e-01	ci left: 6.904675e-04	ci right 8.132892e-04	k: 585	n:780000
KS ci ratio: 1.859360e-02	ci left: 5.341008e-02	ci right 5.441375e-02	k: 42050	n:780000
KCNC2   780000 perm   355 sec   (2198 perm/sec)   p_kst 5.391026e-02   p_cons 7.500000e-04   p_joint 7.364103e-03

Joint ci ratio: 5.113203e-02	ci left: 7.195939e-03	ci right 7.574776e-03	k: 5833	n:790000
Cons ci ratio: 1.607790e-01	ci left: 6.914452e-04	ci right 8.135294e-04	k: 593	n:790000
KS ci ratio: 1.846687e-02	ci left: 5.346101e-02	ci right 5.445872e-02	k: 42627	n:790000
KCNC2   790000 perm   362 sec   (2181 perm/sec)   p_kst 5.395823e-02   p_cons 7.506329e-04   p_joint 7.383544e-03

Joint ci ratio: 4.677914e-02	ci left: 8.497655e-03	ci right 8.905914e-03	k: 6960	n:800000
Cons ci ratio: 1.599732e-01	ci left: 6.900011e-04	ci right 8.111611e-04	k: 599	n:800000
KS ci ratio: 1.835482e-02	ci left: 5.344349e-02	ci right 5.443475e-02	k: 43150	n:800000
KCNC2   800000 perm   369 sec   (2165 perm/sec)   p_kst 5.393750e-02   p_cons 7.487500e-04   p_joint 8.700000e-03

Joint ci ratio: 4.727044e-02	ci left: 8.219471e-03	ci right 8.618625e-03	k: 6818	n:810000
Cons ci ratio: 1.597078e-01	ci left: 6.838527e-04	ci right 8.037148e-04	k: 601	n:810000
KS ci ratio: 1.823706e-02	ci left: 5.346943e-02	ci right 5.445475e-02	k: 43708	n:810000
KCNC2   810000 perm   377 sec   (2149 perm/sec)   p_kst 5.396049e-02   p_cons 7.419753e-04   p_joint 8.417284e-03

Joint ci ratio: 4.698539e-02	ci left: 8.219260e-03	ci right 8.615932e-03	k: 6901	n:820000
Cons ci ratio: 1.578819e-01	ci left: 6.919080e-04	ci right 8.116642e-04	k: 615	n:820000
KS ci ratio: 1.812673e-02	ci left: 5.346563e-02	ci right 5.444484e-02	k: 44242	n:820000
KCNC2   820000 perm   384 sec   (2134 perm/sec)   p_kst 5.395366e-02   p_cons 7.500000e-04   p_joint 8.415854e-03

Joint ci ratio: 4.670881e-02	ci left: 8.217870e-03	ci right 8.612078e-03	k: 6983	n:830000
Cons ci ratio: 1.573721e-01	ci left: 6.882009e-04	ci right 8.068944e-04	k: 619	n:830000
KS ci ratio: 1.801158e-02	ci left: 5.350032e-02	ci right 5.447388e-02	k: 44808	n:830000
KCNC2   830000 perm   392 sec   (2118 perm/sec)   p_kst 5.398554e-02   p_cons 7.457831e-04   p_joint 8.413253e-03

Joint ci ratio: 4.644700e-02	ci left: 8.212990e-03	ci right 8.604697e-03	k: 7062	n:840000
Cons ci ratio: 1.564912e-01	ci left: 6.880141e-04	ci right 8.059489e-04	k: 626	n:840000
KS ci ratio: 1.791488e-02	ci left: 5.344174e-02	ci right 5.440896e-02	k: 45296	n:840000
KCNC2   840000 perm   399 sec   (2103 perm/sec)   p_kst 5.392381e-02   p_cons 7.452381e-04   p_joint 8.407143e-03

Joint ci ratio: 4.614070e-02	ci left: 8.225676e-03	ci right 8.615332e-03	k: 7156	n:850000
Cons ci ratio: 1.553799e-01	ci left: 6.900949e-04	ci right 8.074681e-04	k: 635	n:850000
KS ci ratio: 1.780657e-02	ci left: 5.345953e-02	ci right 5.442116e-02	k: 45848	n:850000
KCNC2   850000 perm   407 sec   (2089 perm/sec)   p_kst 5.393882e-02   p_cons 7.470588e-04   p_joint 8.418824e-03

Joint ci ratio: 4.653469e-02	ci left: 7.993238e-03	ci right 8.375202e-03	k: 7037	n:860000
Cons ci ratio: 1.546522e-01	ci left: 6.887767e-04	ci right 8.053262e-04	k: 641	n:860000
KS ci ratio: 1.769879e-02	ci left: 5.348502e-02	ci right 5.444124e-02	k: 46407	n:860000
KCNC2   860000 perm   415 sec   (2075 perm/sec)   p_kst 5.396163e-02   p_cons 7.453488e-04   p_joint 8.182558e-03

Joint ci ratio: 4.625939e-02	ci left: 7.996794e-03	ci right 8.376607e-03	k: 7121	n:870000
Cons ci ratio: 1.536975e-01	ci left: 6.897004e-04	ci right 8.056194e-04	k: 649	n:870000
KS ci ratio: 1.759611e-02	ci left: 5.349164e-02	ci right 5.444237e-02	k: 46950	n:870000
KCNC2   870000 perm   422 sec   (2061 perm/sec)   p_kst 5.396552e-02   p_cons 7.459770e-04   p_joint 8.185057e-03

Joint ci ratio: 4.465839e-02	ci left: 8.485668e-03	ci right 8.874394e-03	k: 7637	n:880000
Cons ci ratio: 1.531100e-01	ci left: 6.873265e-04	ci right 8.023645e-04	k: 654	n:880000
KS ci ratio: 1.750104e-02	ci left: 5.346417e-02	ci right 5.440922e-02	k: 47463	n:880000
KCNC2   880000 perm   430 sec   (2047 perm/sec)   p_kst 5.393523e-02   p_cons 7.431818e-04   p_joint 8.678409e-03

Joint ci ratio: 4.541016e-02	ci left: 8.114774e-03	ci right 8.492931e-03	k: 7389	n:890000
Cons ci ratio: 1.525291e-01	ci left: 6.850068e-04	ci right 7.991818e-04	k: 659	n:890000
KS ci ratio: 1.740865e-02	ci left: 5.343062e-02	ci right 5.437004e-02	k: 47970	n:890000
KCNC2   890000 perm   438 sec   (2034 perm/sec)   p_kst 5.389888e-02   p_cons 7.404494e-04   p_joint 8.302247e-03

Joint ci ratio: 4.517252e-02	ci left: 8.110295e-03	ci right 8.486213e-03	k: 7467	n:900000
Cons ci ratio: 1.516130e-01	ci left: 6.859463e-04	ci right 7.995289e-04	k: 667	n:900000
KS ci ratio: 1.731430e-02	ci left: 5.341774e-02	ci right 5.435180e-02	k: 48495	n:900000
KCNC2   900000 perm   446 sec   (2019 perm/sec)   p_kst 5.388333e-02   p_cons 7.411111e-04   p_joint 8.296667e-03

Joint ci ratio: 4.497465e-02	ci left: 8.092879e-03	ci right 8.466305e-03	k: 7533	n:910000
Cons ci ratio: 1.508248e-01	ci left: 6.858097e-04	ci right 7.987260e-04	k: 674	n:910000
KS ci ratio: 1.722463e-02	ci left: 5.338656e-02	ci right 5.431519e-02	k: 49003	n:910000
KCNC2   910000 perm   454 sec   (2005 perm/sec)   p_kst 5.384945e-02   p_cons 7.406593e-04   p_joint 8.278022e-03

Joint ci ratio: 4.471709e-02	ci left: 8.098419e-03	ci right 8.469905e-03	k: 7620	n:920000
Cons ci ratio: 1.499389e-01	ci left: 6.867237e-04	ci right 7.990668e-04	k: 682	n:920000
KS ci ratio: 1.713122e-02	ci left: 5.338637e-02	ci right 5.430992e-02	k: 49539	n:920000
KCNC2   920000 perm   462 sec   (1991 perm/sec)   p_kst 5.384674e-02   p_cons 7.413043e-04   p_joint 8.282609e-03

Joint ci ratio: 4.481406e-02	ci left: 7.977304e-03	ci right 8.344049e-03	k: 7588	n:930000
Cons ci ratio: 1.489605e-01	ci left: 6.886552e-04	ci right 8.005137e-04	k: 691	n:930000
KS ci ratio: 1.703752e-02	ci left: 5.339692e-02	ci right 5.431554e-02	k: 50085	n:930000
KCNC2   930000 perm   470 sec   (1978 perm/sec)   p_kst 5.385484e-02   p_cons 7.430108e-04   p_joint 8.159140e-03

Joint ci ratio: 4.307871e-02	ci left: 8.543769e-03	ci right 8.920970e-03	k: 8207	n:940000
Cons ci ratio: 1.478955e-01	ci left: 6.915724e-04	ci right 8.030306e-04	k: 701	n:940000
KS ci ratio: 1.694533e-02	ci left: 5.340725e-02	ci right 5.432103e-02	k: 50631	n:940000
KCNC2   940000 perm   479 sec   (1964 perm/sec)   p_kst 5.386277e-02   p_cons 7.457447e-04   p_joint 8.730851e-03

Joint ci ratio: 4.340730e-02	ci left: 8.326782e-03	ci right 8.697277e-03	k: 8085	n:950000
Cons ci ratio: 1.470599e-01	ci left: 6.924030e-04	ci right 8.033092e-04	k: 709	n:950000
KS ci ratio: 1.685254e-02	ci left: 5.342996e-02	ci right 5.433908e-02	k: 51189	n:950000
KCNC2   950000 perm   487 sec   (1952 perm/sec)   p_kst 5.388316e-02   p_cons 7.463158e-04   p_joint 8.510526e-03

Joint ci ratio: 4.420455e-02	ci left: 7.945356e-03	ci right 8.305538e-03	k: 7799	n:960000
Cons ci ratio: 1.465450e-01	ci left: 6.902074e-04	ci right 8.003409e-04	k: 714	n:960000
KS ci ratio: 1.676075e-02	ci left: 5.345532e-02	ci right 5.435987e-02	k: 51750	n:960000
KCNC2   960000 perm   495 sec   (1938 perm/sec)   p_kst 5.390625e-02   p_cons 7.437500e-04   p_joint 8.123958e-03

Joint ci ratio: 4.396556e-02	ci left: 7.950109e-03	ci right 8.308508e-03	k: 7884	n:970000
Cons ci ratio: 1.455307e-01	ci left: 6.930245e-04	ci right 8.027756e-04	k: 724	n:970000
KS ci ratio: 1.667212e-02	ci left: 5.346991e-02	ci right 5.436987e-02	k: 52301	n:970000
KCNC2   970000 perm   504 sec   (1926 perm/sec)   p_kst 5.391856e-02   p_cons 7.463918e-04   p_joint 8.127835e-03

Joint ci ratio: 4.377750e-02	ci left: 7.937611e-03	ci right 8.293877e-03	k: 7952	n:980000
Cons ci ratio: 1.447343e-01	ci left: 6.938197e-04	ci right 8.030435e-04	k: 732	n:980000
KS ci ratio: 1.658803e-02	ci left: 5.346490e-02	ci right 5.436019e-02	k: 52833	n:980000
KCNC2   980000 perm   512 sec   (1913 perm/sec)   p_kst 5.391122e-02   p_cons 7.469388e-04   p_joint 8.114286e-03

Joint ci ratio: 4.356446e-02	ci left: 7.935360e-03	ci right 8.289749e-03	k: 8030	n:990000
Cons ci ratio: 1.440481e-01	ci left: 6.936267e-04	ci right 8.022579e-04	k: 739	n:990000
KS ci ratio: 1.650259e-02	ci left: 5.347609e-02	ci right 5.436692e-02	k: 53381	n:990000
KCNC2   990000 perm   521 sec   (1901 perm/sec)   p_kst 5.392020e-02   p_cons 7.464646e-04   p_joint 8.111111e-03

Joint ci ratio: 4.335719e-02	ci left: 7.932170e-03	ci right 8.284688e-03	k: 8107	n:1000000
Cons ci ratio: 1.436606e-01	ci left: 6.905464e-04	ci right 7.983793e-04	k: 743	n:1000000
KS ci ratio: 1.641636e-02	ci left: 5.350003e-02	ci right 5.438656e-02	k: 53942	n:1000000
KCNC2   1000000 perm   529 sec   (1889 perm/sec)   p_kst 5.394200e-02   p_cons 7.430000e-04   p_joint 8.107000e-03

Joint ci ratio: 4.260780e-02	ci left: 8.133776e-03	ci right 8.488854e-03	k: 8393	n:1010000
Cons ci ratio: 1.428944e-01	ci left: 6.913462e-04	ci right 7.986791e-04	k: 751	n:1010000
KS ci ratio: 1.633559e-02	ci left: 5.349786e-02	ci right 5.437995e-02	k: 54477	n:1010000
KCNC2   1010000 perm   538 sec   (1877 perm/sec)   p_kst 5.393762e-02   p_cons 7.435644e-04   p_joint 8.309901e-03

Joint ci ratio: 4.103662e-02	ci left: 8.684676e-03	ci right 9.049494e-03	k: 9043	n:1020000
Cons ci ratio: 1.422340e-01	ci left: 6.911862e-04	ci right 7.979563e-04	k: 758	n:1020000
KS ci ratio: 1.625320e-02	ci left: 5.351332e-02	ci right 5.439117e-02	k: 55030	n:1020000
KCNC2   1020000 perm   547 sec   (1865 perm/sec)   p_kst 5.395098e-02   p_cons 7.431373e-04   p_joint 8.865686e-03

Joint ci ratio: 4.220011e-02	ci left: 8.132413e-03	ci right 8.483952e-03	k: 8556	n:1030000
Cons ci ratio: 1.413980e-01	ci left: 6.929036e-04	ci right 7.992568e-04	k: 767	n:1030000
KS ci ratio: 1.617542e-02	ci left: 5.350722e-02	ci right 5.438073e-02	k: 55561	n:1030000
KCNC2   1030000 perm   556 sec   (1853 perm/sec)   p_kst 5.394272e-02   p_cons 7.446602e-04   p_joint 8.306796e-03

Joint ci ratio: 4.199447e-02	ci left: 8.134136e-03	ci right 8.483995e-03	k: 8640	n:1040000
Cons ci ratio: 1.407580e-01	ci left: 6.927342e-04	ci right 7.985398e-04	k: 774	n:1040000
KS ci ratio: 1.609601e-02	ci left: 5.351848e-02	ci right 5.438785e-02	k: 56110	n:1040000
KCNC2   1040000 perm   565 sec   (1841 perm/sec)   p_kst 5.395192e-02   p_cons 7.442308e-04   p_joint 8.307692e-03

Joint ci ratio: 4.178940e-02	ci left: 8.136773e-03	ci right 8.484995e-03	k: 8725	n:1050000
Cons ci ratio: 1.401266e-01	ci left: 6.925692e-04	ci right 7.978355e-04	k: 781	n:1050000
KS ci ratio: 1.602045e-02	ci left: 5.351247e-02	ci right 5.437762e-02	k: 56641	n:1050000
KCNC2   1050000 perm   574 sec   (1830 perm/sec)   p_kst 5.394381e-02   p_cons 7.438095e-04   p_joint 8.309524e-03

Joint ci ratio: 4.159444e-02	ci left: 8.136563e-03	ci right 8.483113e-03	k: 8807	n:1060000
Cons ci ratio: 1.395037e-01	ci left: 6.924083e-04	ci right 7.971433e-04	k: 788	n:1060000
KS ci ratio: 1.594227e-02	ci left: 5.353007e-02	ci right 5.439124e-02	k: 57197	n:1060000
KCNC2   1060000 perm   583 sec   (1818 perm/sec)   p_kst 5.395943e-02   p_cons 7.433962e-04   p_joint 8.308491e-03

Joint ci ratio: 4.180475e-02	ci left: 7.980046e-03	ci right 8.321690e-03	k: 8720	n:1070000
Cons ci ratio: 1.388890e-01	ci left: 6.922514e-04	ci right 7.964631e-04	k: 795	n:1070000
KS ci ratio: 1.586638e-02	ci left: 5.353990e-02	ci right 5.439709e-02	k: 57745	n:1070000
KCNC2   1070000 perm   592 sec   (1808 perm/sec)   p_kst 5.396729e-02   p_cons 7.429907e-04   p_joint 8.149533e-03

Joint ci ratio: 4.123344e-02	ci left: 8.127918e-03	ci right 8.471024e-03	k: 8962	n:1080000
Cons ci ratio: 1.385415e-01	ci left: 6.894167e-04	ci right 7.929207e-04	k: 799	n:1080000
KS ci ratio: 1.579385e-02	ci left: 5.353480e-02	ci right 5.438796e-02	k: 58277	n:1080000
KCNC2   1080000 perm   601 sec   (1796 perm/sec)   p_kst 5.396019e-02   p_cons 7.398148e-04   p_joint 8.298148e-03

Joint ci ratio: 4.103469e-02	ci left: 8.132346e-03	ci right 8.473945e-03	k: 9049	n:1090000
Cons ci ratio: 1.381108e-01	ci left: 6.875202e-04	ci right 7.903921e-04	k: 804	n:1090000
KS ci ratio: 1.571483e-02	ci left: 5.357825e-02	ci right 5.442779e-02	k: 58862	n:1090000
KCNC2   1090000 perm   611 sec   (1785 perm/sec)   p_kst 5.400183e-02   p_cons 7.376147e-04   p_joint 8.301835e-03

Joint ci ratio: 4.124353e-02	ci left: 7.977426e-03	ci right 8.314263e-03	k: 8959	n:1100000
Cons ci ratio: 1.378544e-01	ci left: 6.839030e-04	ci right 7.860282e-04	k: 807	n:1100000
KS ci ratio: 1.564588e-02	ci left: 5.356295e-02	ci right 5.440849e-02	k: 59383	n:1100000
KCNC2   1100000 perm   620 sec   (1774 perm/sec)   p_kst 5.398455e-02   p_cons 7.336364e-04   p_joint 8.144545e-03

Joint ci ratio: 4.107441e-02	ci left: 7.971537e-03	ci right 8.306713e-03	k: 9033	n:1110000
Cons ci ratio: 1.371769e-01	ci left: 6.847010e-04	ci right 7.864018e-04	k: 815	n:1110000
KS ci ratio: 1.557550e-02	ci left: 5.356320e-02	ci right 5.440490e-02	k: 59921	n:1110000
KCNC2   1110000 perm   629 sec   (1763 perm/sec)   p_kst 5.398288e-02   p_cons 7.342342e-04   p_joint 8.137838e-03

Joint ci ratio: 4.035486e-02	ci left: 8.185838e-03	ci right 8.523855e-03	k: 9356	n:1120000
Cons ci ratio: 1.361790e-01	ci left: 6.889356e-04	ci right 7.904607e-04	k: 827	n:1120000
KS ci ratio: 1.550701e-02	ci left: 5.355722e-02	ci right 5.439509e-02	k: 60452	n:1120000
KCNC2   1120000 perm   640 sec   (1751 perm/sec)   p_kst 5.397500e-02   p_cons 7.383929e-04   p_joint 8.353571e-03

Joint ci ratio: 4.018565e-02	ci left: 8.182604e-03	ci right 8.519038e-03	k: 9435	n:1130000
Cons ci ratio: 1.356883e-01	ci left: 6.879680e-04	ci right 7.889557e-04	k: 833	n:1130000
KS ci ratio: 1.544142e-02	ci left: 5.353812e-02	ci right 5.437213e-02	k: 60968	n:1130000
KCNC2   1130000 perm   649 sec   (1741 perm/sec)   p_kst 5.395398e-02   p_cons 7.371681e-04   p_joint 8.349558e-03

Joint ci ratio: 4.000796e-02	ci left: 8.183772e-03	ci right 8.518733e-03	k: 9519	n:1140000
Cons ci ratio: 1.350422e-01	ci left: 6.887131e-04	ci right 7.892901e-04	k: 841	n:1140000
KS ci ratio: 1.537137e-02	ci left: 5.355434e-02	ci right 5.438477e-02	k: 61524	n:1140000
KCNC2   1140000 perm   659 sec   (1729 perm/sec)   p_kst 5.396842e-02   p_cons 7.377193e-04   p_joint 8.350000e-03

Joint ci ratio: 3.981171e-02	ci left: 8.193533e-03	ci right 8.527211e-03	k: 9613	n:1150000
Cons ci ratio: 1.342472e-01	ci left: 6.911271e-04	ci right 7.914150e-04	k: 851	n:1150000
KS ci ratio: 1.530188e-02	ci left: 5.357287e-02	ci right 5.439981e-02	k: 62083	n:1150000
KCNC2   1150000 perm   669 sec   (1718 perm/sec)   p_kst 5.398522e-02   p_cons 7.400000e-04   p_joint 8.359130e-03

Joint ci ratio: 3.974651e-02	ci left: 8.150208e-03	ci right 8.481565e-03	k: 9645	n:1160000
Cons ci ratio: 1.336213e-01	ci left: 6.918346e-04	ci right 7.917199e-04	k: 859	n:1160000
KS ci ratio: 1.523345e-02	ci left: 5.359024e-02	ci right 5.441371e-02	k: 62641	n:1160000
KCNC2   1160000 perm   679 sec   (1708 perm/sec)   p_kst 5.400086e-02   p_cons 7.405172e-04   p_joint 8.314655e-03

Joint ci ratio: 3.845073e-02	ci left: 8.635792e-03	ci right 8.975193e-03	k: 10301	n:1170000
Cons ci ratio: 1.330808e-01	ci left: 6.917048e-04	ci right 7.911355e-04	k: 866	n:1170000
KS ci ratio: 1.517583e-02	ci left: 5.354089e-02	ci right 5.436047e-02	k: 63121	n:1170000
KCNC2   1170000 perm   689 sec   (1698 perm/sec)   p_kst 5.394957e-02   p_cons 7.401709e-04   p_joint 8.804274e-03

Joint ci ratio: 3.826712e-02	ci left: 8.645702e-03	ci right 8.983834e-03	k: 10400	n:1180000
Cons ci ratio: 1.326988e-01	ci left: 6.899393e-04	ci right 7.888091e-04	k: 871	n:1180000
KS ci ratio: 1.510318e-02	ci left: 5.359794e-02	ci right 5.441442e-02	k: 63726	n:1180000
KCNC2   1180000 perm   700 sec   (1686 perm/sec)   p_kst 5.400508e-02   p_cons 7.381356e-04   p_joint 8.813559e-03

Joint ci ratio: 3.888229e-02	ci left: 8.304210e-03	ci right 8.634324e-03	k: 10077	n:1190000
Cons ci ratio: 1.320942e-01	ci left: 6.906415e-04	ci right 7.891256e-04	k: 879	n:1190000
KS ci ratio: 1.504442e-02	ci left: 5.356695e-02	ci right 5.437976e-02	k: 64227	n:1190000
KCNC2   1190000 perm   710 sec   (1676 perm/sec)   p_kst 5.397227e-02   p_cons 7.386555e-04   p_joint 8.468067e-03

Joint ci ratio: 3.912320e-02	ci left: 8.134319e-03	ci right 8.459727e-03	k: 9955	n:1200000
Cons ci ratio: 1.314238e-01	ci left: 6.921390e-04	ci right 7.902966e-04	k: 888	n:1200000
KS ci ratio: 1.497876e-02	ci left: 5.358797e-02	ci right 5.439752e-02	k: 64790	n:1200000
KCNC2   1200000 perm   720 sec   (1666 perm/sec)   p_kst 5.399167e-02   p_cons 7.400000e-04   p_joint 8.295833e-03

Joint ci ratio: 3.896896e-02	ci left: 8.131745e-03	ci right 8.455739e-03	k: 10034	n:1210000
Cons ci ratio: 1.307635e-01	ci left: 6.936129e-04	ci right 7.914470e-04	k: 897	n:1210000
KS ci ratio: 1.492023e-02	ci left: 5.356582e-02	ci right 5.437185e-02	k: 65301	n:1210000
KCNC2   1210000 perm   730 sec   (1657 perm/sec)   p_kst 5.396777e-02   p_cons 7.413223e-04   p_joint 8.292562e-03

Joint ci ratio: 3.879720e-02	ci left: 8.137333e-03	ci right 8.460089e-03	k: 10123	n:1220000
Cons ci ratio: 1.304011e-01	ci left: 6.918920e-04	ci right 7.891920e-04	k: 902	n:1220000
KS ci ratio: 1.485343e-02	ci left: 5.360531e-02	ci right 5.440829e-02	k: 65887	n:1220000
KCNC2   1220000 perm   741 sec   (1647 perm/sec)   p_kst 5.400574e-02   p_cons 7.393443e-04   p_joint 8.297541e-03

Joint ci ratio: 3.876957e-02	ci left: 8.083249e-03	ci right 8.403626e-03	k: 10138	n:1230000
Cons ci ratio: 1.298986e-01	ci left: 6.917727e-04	ci right 7.886520e-04	k: 909	n:1230000
KS ci ratio: 1.479317e-02	ci left: 5.360527e-02	ci right 5.440496e-02	k: 66425	n:1230000
KCNC2   1230000 perm   751 sec   (1638 perm/sec)   p_kst 5.400407e-02   p_cons 7.390244e-04   p_joint 8.242276e-03

Joint ci ratio: 3.939663e-02	ci left: 7.764889e-03	ci right 8.077738e-03	k: 9821	n:1240000
Cons ci ratio: 1.290503e-01	ci left: 6.955579e-04	ci right 7.922825e-04	k: 921	n:1240000
KS ci ratio: 1.473422e-02	ci left: 5.360122e-02	ci right 5.439764e-02	k: 66958	n:1240000
KCNC2   1240000 perm   761 sec   (1628 perm/sec)   p_kst 5.399839e-02   p_cons 7.427419e-04   p_joint 7.920161e-03

Joint ci ratio: 3.779234e-02	ci left: 8.372298e-03	ci right 8.695586e-03	k: 10666	n:1250000
Cons ci ratio: 1.284249e-01	ci left: 6.969616e-04	ci right 7.933760e-04	k: 930	n:1250000
KS ci ratio: 1.467873e-02	ci left: 5.357811e-02	ci right 5.437116e-02	k: 67467	n:1250000
KCNC2   1250000 perm   773 sec   (1618 perm/sec)   p_kst 5.397360e-02   p_cons 7.440000e-04   p_joint 8.532800e-03

Joint ci ratio: 3.765679e-02	ci left: 8.366385e-03	ci right 8.688261e-03	k: 10743	n:1260000
Cons ci ratio: 1.278766e-01	ci left: 6.975758e-04	ci right 7.936319e-04	k: 938	n:1260000
KS ci ratio: 1.461659e-02	ci left: 5.360598e-02	ci right 5.439607e-02	k: 68040	n:1260000
KCNC2   1260000 perm   783 sec   (1609 perm/sec)   p_kst 5.400000e-02   p_cons 7.444444e-04   p_joint 8.526190e-03

Joint ci ratio: 3.776100e-02	ci left: 8.255260e-03	ci right 8.573759e-03	k: 10685	n:1270000
Cons ci ratio: 1.274701e-01	ci left: 6.966566e-04	ci right 7.922581e-04	k: 944	n:1270000
KS ci ratio: 1.456061e-02	ci left: 5.359577e-02	ci right 5.438265e-02	k: 68565	n:1270000
KCNC2   1270000 perm   794 sec   (1600 perm/sec)   p_kst 5.398819e-02   p_cons 7.433071e-04   p_joint 8.413386e-03

Joint ci ratio: 3.759058e-02	ci left: 8.265834e-03	ci right 8.583271e-03	k: 10782	n:1280000
Cons ci ratio: 1.268008e-01	ci left: 6.987781e-04	ci right 7.941294e-04	k: 954	n:1280000
KS ci ratio: 1.450250e-02	ci left: 5.360518e-02	ci right 5.438903e-02	k: 69115	n:1280000
KCNC2   1280000 perm   804 sec   (1591 perm/sec)   p_kst 5.399609e-02   p_cons 7.453125e-04   p_joint 8.423438e-03

Joint ci ratio: 3.770659e-02	ci left: 8.151836e-03	ci right 8.465882e-03	k: 10717	n:1290000
Cons ci ratio: 1.261420e-01	ci left: 7.008679e-04	ci right 7.959703e-04	k: 964	n:1290000
KS ci ratio: 1.444969e-02	ci left: 5.358200e-02	ci right 5.436264e-02	k: 69623	n:1290000
KCNC2   1290000 perm   816 sec   (1582 perm/sec)   p_kst 5.397132e-02   p_cons 7.472868e-04   p_joint 8.307752e-03

Joint ci ratio: 3.634116e-02	ci left: 8.709533e-03	ci right 9.032661e-03	k: 11531	n:1300000
Cons ci ratio: 1.254290e-01	ci left: 7.036720e-04	ci right 7.985751e-04	k: 975	n:1300000
KS ci ratio: 1.438834e-02	ci left: 5.362358e-02	ci right 5.440148e-02	k: 70215	n:1300000
KCNC2   1300000 perm   826 sec   (1573 perm/sec)   p_kst 5.401154e-02   p_cons 7.500000e-04   p_joint 8.870000e-03

Joint ci ratio: 3.619544e-02	ci left: 8.713397e-03	ci right 9.035345e-03	k: 11624	n:1310000
Cons ci ratio: 1.251729e-01	ci left: 7.012581e-04	ci right 7.956282e-04	k: 979	n:1310000
KS ci ratio: 1.433344e-02	ci left: 5.362422e-02	ci right 5.439913e-02	k: 70754	n:1310000
KCNC2   1310000 perm   837 sec   (1565 perm/sec)   p_kst 5.401069e-02   p_cons 7.473282e-04   p_joint 8.873282e-03

Joint ci ratio: 3.605922e-02	ci left: 8.713451e-03	ci right 9.034164e-03	k: 11712	n:1320000
Cons ci ratio: 1.243506e-01	ci left: 7.054868e-04	ci right 7.997563e-04	k: 992	n:1320000
KS ci ratio: 1.427842e-02	ci left: 5.363013e-02	ci right 5.440213e-02	k: 71300	n:1320000
KCNC2   1320000 perm   848 sec   (1557 perm/sec)   p_kst 5.401515e-02   p_cons 7.515152e-04   p_joint 8.872727e-03

Joint ci ratio: 3.593990e-02	ci left: 8.706054e-03	ci right 9.025413e-03	k: 11790	n:1330000
Cons ci ratio: 1.237290e-01	ci left: 7.074679e-04	ci right 8.014950e-04	k: 1002	n:1330000
KS ci ratio: 1.422434e-02	ci left: 5.363371e-02	ci right 5.440282e-02	k: 71843	n:1330000
KCNC2   1330000 perm   859 sec   (1548 perm/sec)   p_kst 5.401729e-02   p_cons 7.533835e-04   p_joint 8.864662e-03

Joint ci ratio: 3.580806e-02	ci left: 8.705427e-03	ci right 9.023567e-03	k: 11877	n:1340000
Cons ci ratio: 1.233607e-01	ci left: 7.065275e-04	ci right 8.001297e-04	k: 1008	n:1340000
KS ci ratio: 1.416973e-02	ci left: 5.364543e-02	ci right 5.441172e-02	k: 72397	n:1340000
KCNC2   1340000 perm   870 sec   (1540 perm/sec)   p_kst 5.402761e-02   p_cons 7.522388e-04   p_joint 8.863433e-03

Joint ci ratio: 3.568067e-02	ci left: 8.703342e-03	ci right 9.020252e-03	k: 11962	n:1350000
Cons ci ratio: 1.230563e-01	ci left: 7.048835e-04	ci right 7.980206e-04	k: 1013	n:1350000
KS ci ratio: 1.411882e-02	ci left: 5.363483e-02	ci right 5.439820e-02	k: 72921	n:1350000
KCNC2   1350000 perm   881 sec   (1532 perm/sec)   p_kst 5.401556e-02   p_cons 7.503704e-04   p_joint 8.860741e-03

Joint ci ratio: 3.554273e-02	ci left: 8.707121e-03	ci right 9.022917e-03	k: 12055	n:1360000
Cons ci ratio: 1.225737e-01	ci left: 7.054022e-04	ci right 7.982158e-04	k: 1021	n:1360000
KS ci ratio: 1.406501e-02	ci left: 5.364931e-02	ci right 5.440995e-02	k: 73479	n:1360000
KCNC2   1360000 perm   892 sec   (1524 perm/sec)   p_kst 5.402868e-02   p_cons 7.507353e-04   p_joint 8.863971e-03

Joint ci ratio: 3.541961e-02	ci left: 8.704335e-03	ci right 9.018915e-03	k: 12139	n:1370000
Cons ci ratio: 1.219192e-01	ci left: 7.080370e-04	ci right 8.006639e-04	k: 1032	n:1370000
KS ci ratio: 1.401132e-02	ci left: 5.366722e-02	ci right 5.442518e-02	k: 74042	n:1370000
KCNC2   1370000 perm   904 sec   (1516 perm/sec)   p_kst 5.404526e-02   p_cons 7.532847e-04   p_joint 8.860584e-03

Joint ci ratio: 3.529631e-02	ci left: 8.702310e-03	ci right 9.015699e-03	k: 12224	n:1380000
Cons ci ratio: 1.213332e-01	ci left: 7.099322e-04	ci right 8.023287e-04	k: 1042	n:1380000
KS ci ratio: 1.396347e-02	ci left: 5.364659e-02	ci right 5.440166e-02	k: 74552	n:1380000
KCNC2   1380000 perm   916 sec   (1506 perm/sec)   p_kst 5.402319e-02   p_cons 7.550725e-04   p_joint 8.857971e-03

Joint ci ratio: 3.515988e-02	ci left: 8.707447e-03	ci right 9.019785e-03	k: 12319	n:1390000
Cons ci ratio: 1.208705e-01	ci left: 7.104059e-04	ci right 8.024862e-04	k: 1050	n:1390000
KS ci ratio: 1.391102e-02	ci left: 5.366355e-02	ci right 5.441600e-02	k: 75114	n:1390000
KCNC2   1390000 perm   928 sec   (1498 perm/sec)   p_kst 5.403885e-02   p_cons 7.553957e-04   p_joint 8.862590e-03

Joint ci ratio: 3.504496e-02	ci left: 8.702600e-03	ci right 9.013723e-03	k: 12400	n:1400000
Cons ci ratio: 1.204700e-01	ci left: 7.101806e-04	ci right 8.019050e-04	k: 1057	n:1400000
KS ci ratio: 1.386313e-02	ci left: 5.365109e-02	ci right 5.440075e-02	k: 75635	n:1400000
KCNC2   1400000 perm   939 sec   (1491 perm/sec)   p_kst 5.402500e-02   p_cons 7.550000e-04   p_joint 8.857143e-03

Joint ci ratio: 3.493257e-02	ci left: 8.697120e-03	ci right 9.007030e-03	k: 12480	n:1410000
Cons ci ratio: 1.201299e-01	ci left: 7.092711e-04	ci right 8.006011e-04	k: 1063	n:1410000
KS ci ratio: 1.381813e-02	ci left: 5.362114e-02	ci right 5.436793e-02	k: 76131	n:1410000
KCNC2   1410000 perm   951 sec   (1483 perm/sec)   p_kst 5.399362e-02   p_cons 7.539007e-04   p_joint 8.851064e-03

Joint ci ratio: 3.478216e-02	ci left: 8.711267e-03	ci right 9.020318e-03	k: 12588	n:1420000
Cons ci ratio: 1.195136e-01	ci left: 7.117906e-04	ci right 8.029415e-04	k: 1074	n:1420000
KS ci ratio: 1.376132e-02	ci left: 5.368216e-02	ci right 5.442670e-02	k: 76756	n:1420000
KCNC2   1420000 perm   962 sec   (1476 perm/sec)   p_kst 5.405352e-02   p_cons 7.563380e-04   p_joint 8.864789e-03

Joint ci ratio: 3.465710e-02	ci left: 8.713433e-03	ci right 9.021428e-03	k: 12679	n:1430000
Cons ci ratio: 1.189614e-01	ci left: 7.135975e-04	ci right 8.045280e-04	k: 1084	n:1430000
KS ci ratio: 1.371730e-02	ci left: 5.365242e-02	ci right 5.439415e-02	k: 77252	n:1430000
KCNC2   1430000 perm   974 sec   (1469 perm/sec)   p_kst 5.402238e-02   p_cons 7.580420e-04   p_joint 8.866434e-03

Joint ci ratio: 3.451430e-02	ci left: 8.725210e-03	ci right 9.032325e-03	k: 12784	n:1440000
Cons ci ratio: 1.185253e-01	ci left: 7.140326e-04	ci right 8.046615e-04	k: 1092	n:1440000
KS ci ratio: 1.367081e-02	ci left: 5.364455e-02	ci right 5.438364e-02	k: 77779	n:1440000
KCNC2   1440000 perm   985 sec   (1462 perm/sec)   p_kst 5.401319e-02   p_cons 7.583333e-04   p_joint 8.877778e-03

Joint ci ratio: 3.503611e-02	ci left: 8.409324e-03	ci right 8.709885e-03	k: 12410	n:1450000
Cons ci ratio: 1.179867e-01	ci left: 7.158008e-04	ci right 8.062125e-04	k: 1102	n:1450000
KS ci ratio: 1.362406e-02	ci left: 5.364229e-02	ci right 5.437880e-02	k: 78314	n:1450000
KCNC2   1450000 perm   997 sec   (1454 perm/sec)   p_kst 5.400966e-02   p_cons 7.600000e-04   p_joint 8.558621e-03

Joint ci ratio: 3.489845e-02	ci left: 8.418263e-03	ci right 8.717938e-03	k: 12508	n:1460000
Cons ci ratio: 1.175082e-01	ci left: 7.168809e-04	ci right 8.070363e-04	k: 1111	n:1460000
KS ci ratio: 1.357661e-02	ci left: 5.364894e-02	ci right 5.438296e-02	k: 78862	n:1460000
KCNC2   1460000 perm   1009 sec   (1447 perm/sec)   p_kst 5.401507e-02   p_cons 7.609589e-04   p_joint 8.567123e-03

Joint ci ratio: 3.478606e-02	ci left: 8.415618e-03	ci right 8.714214e-03	k: 12589	n:1470000
Cons ci ratio: 1.174029e-01	ci left: 7.133246e-04	ci right 8.029469e-04	k: 1113	n:1470000
KS ci ratio: 1.352766e-02	ci left: 5.367043e-02	ci right 5.440208e-02	k: 79432	n:1470000
KCNC2   1470000 perm   1021 sec   (1440 perm/sec)   p_kst 5.403537e-02   p_cons 7.571429e-04   p_joint 8.563946e-03

Joint ci ratio: 3.466647e-02	ci left: 8.417029e-03	ci right 8.714628e-03	k: 12676	n:1480000
Cons ci ratio: 1.170358e-01	ci left: 7.130959e-04	ci right 8.023899e-04	k: 1120	n:1480000
KS ci ratio: 1.348272e-02	ci left: 5.366536e-02	ci right 5.439449e-02	k: 79963	n:1480000
KCNC2   1480000 perm   1033 sec   (1433 perm/sec)   p_kst 5.402905e-02   p_cons 7.567568e-04   p_joint 8.564865e-03

Joint ci ratio: 3.488602e-02	ci left: 8.256074e-03	ci right 8.549868e-03	k: 12519	n:1490000
Cons ci ratio: 1.166721e-01	ci left: 7.128707e-04	ci right 8.018400e-04	k: 1127	n:1490000
KS ci ratio: 1.343804e-02	ci left: 5.366171e-02	ci right 5.438835e-02	k: 80496	n:1490000
KCNC2   1490000 perm   1045 sec   (1425 perm/sec)   p_kst 5.402416e-02   p_cons 7.563758e-04   p_joint 8.402013e-03

Joint ci ratio: 3.400776e-02	ci left: 8.630663e-03	ci right 8.929905e-03	k: 13169	n:1500000
Cons ci ratio: 1.162605e-01	ci left: 7.132962e-04	ci right 8.019830e-04	k: 1135	n:1500000
KS ci ratio: 1.339153e-02	ci left: 5.367538e-02	ci right 5.439967e-02	k: 81055	n:1500000
KCNC2   1500000 perm   1058 sec   (1418 perm/sec)   p_kst 5.403667e-02   p_cons 7.566667e-04   p_joint 8.779333e-03

Joint ci ratio: 3.366112e-02	ci left: 8.751468e-03	ci right 9.051745e-03	k: 13440	n:1510000
Cons ci ratio: 1.160565e-01	ci left: 7.111444e-04	ci right 7.993979e-04	k: 1139	n:1510000
KS ci ratio: 1.334499e-02	ci left: 5.369284e-02	ci right 5.441483e-02	k: 81620	n:1510000
KCNC2   1510000 perm   1070 sec   (1411 perm/sec)   p_kst 5.405298e-02   p_cons 7.543046e-04   p_joint 8.900662e-03

Joint ci ratio: 3.375345e-02	ci left: 8.646915e-03	ci right 8.944435e-03	k: 13368	n:1520000
Cons ci ratio: 1.156514e-01	ci left: 7.115765e-04	ci right 7.995543e-04	k: 1147	n:1520000
KS ci ratio: 1.330338e-02	ci left: 5.367597e-02	ci right 5.439547e-02	k: 82133	n:1520000
KCNC2   1520000 perm   1083 sec   (1403 perm/sec)   p_kst 5.403487e-02   p_cons 7.546053e-04   p_joint 8.794737e-03

Joint ci ratio: 3.344042e-02	ci left: 8.752433e-03	ci right 9.050737e-03	k: 13618	n:1530000
Cons ci ratio: 1.153504e-01	ci left: 7.107339e-04	ci right 7.983633e-04	k: 1153	n:1530000
KS ci ratio: 1.325978e-02	ci left: 5.367757e-02	ci right 5.439471e-02	k: 82674	n:1530000
KCNC2   1530000 perm   1096 sec   (1396 perm/sec)   p_kst 5.403529e-02   p_cons 7.535948e-04   p_joint 8.900654e-03

Joint ci ratio: 3.330841e-02	ci left: 8.765145e-03	ci right 9.062680e-03	k: 13726	n:1540000
Cons ci ratio: 1.149526e-01	ci left: 7.111639e-04	ci right 7.985234e-04	k: 1161	n:1540000
KS ci ratio: 1.321635e-02	ci left: 5.368109e-02	ci right 5.439591e-02	k: 83218	n:1540000
KCNC2   1540000 perm   1109 sec   (1389 perm/sec)   p_kst 5.403766e-02   p_cons 7.538961e-04   p_joint 8.912987e-03

Joint ci ratio: 3.318884e-02	ci left: 8.771936e-03	ci right 9.068613e-03	k: 13825	n:1550000
Cons ci ratio: 1.146080e-01	ci left: 7.109623e-04	ci right 7.980174e-04	k: 1168	n:1550000
KS ci ratio: 1.317127e-02	ci left: 5.370065e-02	ci right 5.441328e-02	k: 83787	n:1550000
KCNC2   1550000 perm   1122 sec   (1382 perm/sec)   p_kst 5.405613e-02   p_cons 7.535484e-04   p_joint 8.919355e-03

Joint ci ratio: 3.330788e-02	ci left: 8.654034e-03	ci right 8.947793e-03	k: 13728	n:1560000
Cons ci ratio: 1.144125e-01	ci left: 7.088954e-04	ci right 7.955395e-04	k: 1172	n:1560000
KS ci ratio: 1.313175e-02	ci left: 5.368034e-02	ci right 5.439054e-02	k: 84294	n:1560000
KCNC2   1560000 perm   1135 sec   (1375 perm/sec)   p_kst 5.403462e-02   p_cons 7.512821e-04   p_joint 8.800000e-03

Joint ci ratio: 3.319074e-02	ci left: 8.660184e-03	ci right 8.953098e-03	k: 13825	n:1570000
Cons ci ratio: 1.136398e-01	ci left: 7.142807e-04	ci right 8.009538e-04	k: 1188	n:1570000
KS ci ratio: 1.309119e-02	ci left: 5.367109e-02	ci right 5.437896e-02	k: 84818	n:1570000
KCNC2   1570000 perm   1148 sec   (1368 perm/sec)   p_kst 5.402420e-02   p_cons 7.566879e-04   p_joint 8.805732e-03

Joint ci ratio: 3.310602e-02	ci left: 8.649936e-03	ci right 8.941742e-03	k: 13896	n:1580000
Cons ci ratio: 1.135923e-01	ci left: 7.103748e-04	ci right 7.965355e-04	k: 1189	n:1580000
KS ci ratio: 1.305020e-02	ci left: 5.366827e-02	ci right 5.437387e-02	k: 85352	n:1580000
KCNC2   1580000 perm   1168 sec   (1353 perm/sec)   p_kst 5.402025e-02   p_cons 7.525316e-04   p_joint 8.794937e-03

Joint ci ratio: 3.298980e-02	ci left: 8.656660e-03	ci right 8.947649e-03	k: 13994	n:1590000
Cons ci ratio: 1.132124e-01	ci left: 7.107958e-04	ci right 7.966999e-04	k: 1197	n:1590000
KS ci ratio: 1.300824e-02	ci left: 5.367615e-02	ci right 5.437957e-02	k: 85903	n:1590000
KCNC2   1590000 perm   1181 sec   (1346 perm/sec)   p_kst 5.402704e-02   p_cons 7.528302e-04   p_joint 8.801258e-03

Joint ci ratio: 3.289246e-02	ci left: 8.654004e-03	ci right 8.944029e-03	k: 14077	n:1600000
Cons ci ratio: 1.129300e-01	ci left: 7.099972e-04	ci right 7.955766e-04	k: 1203	n:1600000
KS ci ratio: 1.296683e-02	ci left: 5.368268e-02	ci right 5.438393e-02	k: 86452	n:1600000
KCNC2   1600000 perm   1194 sec   (1340 perm/sec)   p_kst 5.403250e-02   p_cons 7.518750e-04   p_joint 8.798125e-03

Joint ci ratio: 3.278430e-02	ci left: 8.657542e-03	ci right 8.946714e-03	k: 14170	n:1610000
Cons ci ratio: 1.125566e-01	ci left: 7.104161e-04	ci right 7.957441e-04	k: 1211	n:1610000
KS ci ratio: 1.292645e-02	ci left: 5.368419e-02	ci right 5.438326e-02	k: 86993	n:1610000
KCNC2   1610000 perm   1209 sec   (1332 perm/sec)   p_kst 5.403292e-02   p_cons 7.521739e-04   p_joint 8.801242e-03

Joint ci ratio: 3.266911e-02	ci left: 8.665324e-03	ci right 8.953720e-03	k: 14270	n:1620000
Cons ci ratio: 1.122791e-01	ci left: 7.096304e-04	ci right 7.946399e-04	k: 1217	n:1620000
KS ci ratio: 1.288636e-02	ci left: 5.368629e-02	ci right 5.438320e-02	k: 87535	n:1620000
KCNC2   1620000 perm   1255 sec   (1291 perm/sec)   p_kst 5.403395e-02   p_cons 7.512346e-04   p_joint 8.808642e-03

Joint ci ratio: 3.286102e-02	ci left: 8.512362e-03	ci right 8.797363e-03	k: 14106	n:1630000
Cons ci ratio: 1.118209e-01	ci left: 7.112399e-04	ci right 7.960716e-04	k: 1227	n:1630000
KS ci ratio: 1.284703e-02	ci left: 5.368532e-02	ci right 5.438007e-02	k: 88072	n:1630000
KCNC2   1630000 perm   1286 sec   (1267 perm/sec)   p_kst 5.403190e-02   p_cons 7.527607e-04   p_joint 8.653988e-03

Joint ci ratio: 3.226176e-02	ci left: 8.777993e-03	ci right 9.066428e-03	k: 14631	n:1640000
Cons ci ratio: 1.112784e-01	ci left: 7.140160e-04	ci right 7.987386e-04	k: 1239	n:1640000
KS ci ratio: 1.280752e-02	ci left: 5.368861e-02	ci right 5.438126e-02	k: 88616	n:1640000
KCNC2   1640000 perm   1300 sec   (1262 perm/sec)   p_kst 5.403415e-02   p_cons 7.554878e-04   p_joint 8.921341e-03

Joint ci ratio: 3.237557e-02	ci left: 8.664067e-03	ci right 8.949782e-03	k: 14530	n:1650000
Cons ci ratio: 1.107880e-01	ci left: 7.161702e-04	ci right 8.007495e-04	k: 1250	n:1650000
KS ci ratio: 1.276958e-02	ci left: 5.368220e-02	ci right 5.437270e-02	k: 89144	n:1650000
KCNC2   1650000 perm   1313 sec   (1257 perm/sec)   p_kst 5.402667e-02   p_cons 7.575758e-04   p_joint 8.806061e-03

Joint ci ratio: 3.228689e-02	ci left: 8.659677e-03	ci right 8.944450e-03	k: 14610	n:1660000
Cons ci ratio: 1.106114e-01	ci left: 7.141988e-04	ci right 7.984020e-04	k: 1254	n:1660000
KS ci ratio: 1.273259e-02	ci left: 5.367107e-02	ci right 5.435941e-02	k: 89664	n:1660000
KCNC2   1660000 perm   1326 sec   (1251 perm/sec)   p_kst 5.401446e-02   p_cons 7.554217e-04   p_joint 8.801205e-03

Joint ci ratio: 3.218458e-02	ci left: 8.663063e-03	ci right 8.947028e-03	k: 14703	n:1670000
Cons ci ratio: 1.103042e-01	ci left: 7.139980e-04	ci right 7.979286e-04	k: 1261	n:1670000
KS ci ratio: 1.269494e-02	ci left: 5.366783e-02	ci right 5.435408e-02	k: 90197	n:1670000
KCNC2   1670000 perm   1340 sec   (1246 perm/sec)   p_kst 5.401018e-02   p_cons 7.550898e-04   p_joint 8.804192e-03

Joint ci ratio: 3.208432e-02	ci left: 8.665819e-03	ci right 8.948974e-03	k: 14795	n:1680000
Cons ci ratio: 1.099129e-01	ci left: 7.149576e-04	ci right 7.986836e-04	k: 1270	n:1680000
KS ci ratio: 1.265851e-02	ci left: 5.365751e-02	ci right 5.434164e-02	k: 90718	n:1680000
KCNC2   1680000 perm   1353 sec   (1242 perm/sec)   p_kst 5.399881e-02   p_cons 7.559524e-04   p_joint 8.806548e-03

Joint ci ratio: 3.225494e-02	ci left: 8.524141e-03	ci right 8.804174e-03	k: 14641	n:1690000
Cons ci ratio: 1.096115e-01	ci left: 7.147554e-04	ci right 7.982133e-04	k: 1277	n:1690000
KS ci ratio: 1.262027e-02	ci left: 5.366443e-02	ci right 5.434657e-02	k: 91268	n:1690000
KCNC2   1690000 perm   1372 sec   (1232 perm/sec)   p_kst 5.400473e-02   p_cons 7.556213e-04   p_joint 8.663314e-03

Joint ci ratio: 3.273150e-02	ci left: 8.229510e-03	ci right 8.503934e-03	k: 14222	n:1700000
Cons ci ratio: 1.093552e-01	ci left: 7.139837e-04	ci right 7.971440e-04	k: 1283	n:1700000
KS ci ratio: 1.258390e-02	ci left: 5.365895e-02	ci right 5.433904e-02	k: 91797	n:1700000
KCNC2   1700000 perm   1399 sec   (1215 perm/sec)   p_kst 5.399824e-02   p_cons 7.547059e-04   p_joint 8.365882e-03

Joint ci ratio: 3.262722e-02	ci left: 8.234166e-03	ci right 8.507854e-03	k: 14313	n:1710000
Cons ci ratio: 1.089317e-01	ci left: 7.154967e-04	ci right 7.984898e-04	k: 1293	n:1710000
KS ci ratio: 1.254662e-02	ci left: 5.366345e-02	ci right 5.434157e-02	k: 92343	n:1710000
KCNC2   1710000 perm   1427 sec   (1198 perm/sec)   p_kst 5.400175e-02   p_cons 7.561404e-04   p_joint 8.370175e-03

Joint ci ratio: 3.254444e-02	ci left: 8.228389e-03	ci right 8.501178e-03	k: 14386	n:1720000
Cons ci ratio: 1.084716e-01	ci left: 7.175584e-04	ci right 8.004166e-04	k: 1304	n:1720000
KS ci ratio: 1.250817e-02	ci left: 5.368008e-02	ci right 5.435631e-02	k: 92910	n:1720000
KCNC2   1720000 perm   1455 sec   (1182 perm/sec)   p_kst 5.401744e-02   p_cons 7.581395e-04   p_joint 8.363953e-03

Joint ci ratio: 3.246569e-02	ci left: 8.220959e-03	ci right 8.492830e-03	k: 14456	n:1730000
Cons ci ratio: 1.082231e-01	ci left: 7.167849e-04	ci right 7.993521e-04	k: 1310	n:1730000
KS ci ratio: 1.247487e-02	ci left: 5.365732e-02	ci right 5.433146e-02	k: 93409	n:1730000
KCNC2   1730000 perm   1478 sec   (1170 perm/sec)   p_kst 5.399364e-02   p_cons 7.572254e-04   p_joint 8.356069e-03

Joint ci ratio: 3.238750e-02	ci left: 8.213615e-03	ci right 8.484577e-03	k: 14526	n:1740000
Cons ci ratio: 1.078944e-01	ci left: 7.171388e-04	ci right 7.994800e-04	k: 1318	n:1740000
KS ci ratio: 1.243946e-02	ci left: 5.365431e-02	ci right 5.432648e-02	k: 93942	n:1740000
KCNC2   1740000 perm   1492 sec   (1166 perm/sec)   p_kst 5.398966e-02   p_cons 7.574713e-04   p_joint 8.348276e-03

Joint ci ratio: 3.237817e-02	ci left: 8.171779e-03	ci right 8.441281e-03	k: 14535	n:1750000
Cons ci ratio: 1.074876e-01	ci left: 7.186013e-04	ci right 8.007796e-04	k: 1328	n:1750000
KS ci ratio: 1.240581e-02	ci left: 5.363938e-02	ci right 5.430953e-02	k: 94454	n:1750000
KCNC2   1750000 perm   1506 sec   (1162 perm/sec)   p_kst 5.397371e-02   p_cons 7.588571e-04   p_joint 8.305714e-03

Joint ci ratio: 3.229615e-02	ci left: 8.167053e-03	ci right 8.435705e-03	k: 14609	n:1760000
Cons ci ratio: 1.072459e-01	ci left: 7.178359e-04	ci right 7.997304e-04	k: 1334	n:1760000
KS ci ratio: 1.237036e-02	ci left: 5.364161e-02	ci right 5.430986e-02	k: 94996	n:1760000
KCNC2   1760000 perm   1520 sec   (1158 perm/sec)   p_kst 5.397500e-02   p_cons 7.579545e-04   p_joint 8.300568e-03

Joint ci ratio: 3.244955e-02	ci left: 8.044689e-03	ci right 8.310596e-03	k: 14473	n:1770000
Cons ci ratio: 1.066877e-01	ci left: 7.214784e-04	ci right 8.033332e-04	k: 1348	n:1770000
KS ci ratio: 1.233705e-02	ci left: 5.362861e-02	ci right 5.429489e-02	k: 95511	n:1770000
KCNC2   1770000 perm   1534 sec   (1154 perm/sec)   p_kst 5.396102e-02   p_cons 7.615819e-04   p_joint 8.176836e-03

Joint ci ratio: 3.234234e-02	ci left: 8.052991e-03	ci right 8.318276e-03	k: 14569	n:1780000
Cons ci ratio: 1.064513e-01	ci left: 7.207061e-04	ci right 8.022807e-04	k: 1354	n:1780000
KS ci ratio: 1.230077e-02	ci left: 5.364264e-02	ci right 5.430712e-02	k: 96074	n:1780000
KCNC2   1780000 perm   1549 sec   (1149 perm/sec)   p_kst 5.397416e-02   p_cons 7.606742e-04   p_joint 8.184831e-03

Joint ci ratio: 3.224838e-02	ci left: 8.055105e-03	ci right 8.319675e-03	k: 14654	n:1790000
Cons ci ratio: 1.062164e-01	ci left: 7.199426e-04	ci right 8.012398e-04	k: 1360	n:1790000
KS ci ratio: 1.226829e-02	ci left: 5.362756e-02	ci right 5.429008e-02	k: 96585	n:1790000
KCNC2   1790000 perm   1563 sec   (1145 perm/sec)   p_kst 5.395810e-02   p_cons 7.597765e-04   p_joint 8.186592e-03

Joint ci ratio: 3.224912e-02	ci left: 8.010351e-03	ci right 8.273457e-03	k: 14654	n:1800000
Cons ci ratio: 1.058669e-01	ci left: 7.208103e-04	ci right 8.019210e-04	k: 1369	n:1800000
KS ci ratio: 1.223566e-02	ci left: 5.361597e-02	ci right 5.427658e-02	k: 97102	n:1800000
KCNC2   1800000 perm   1577 sec   (1141 perm/sec)   p_kst 5.394556e-02   p_cons 7.605556e-04   p_joint 8.141111e-03

Joint ci ratio: 3.217909e-02	ci left: 8.001169e-03	ci right 8.263392e-03	k: 14718	n:1810000
Cons ci ratio: 1.056359e-01	ci left: 7.200551e-04	ci right 8.008930e-04	k: 1375	n:1810000
KS ci ratio: 1.220244e-02	ci left: 5.361167e-02	ci right 5.427042e-02	k: 97632	n:1810000
KCNC2   1810000 perm   1591 sec   (1137 perm/sec)   p_kst 5.394033e-02   p_cons 7.596685e-04   p_joint 8.131492e-03

Joint ci ratio: 3.194327e-02	ci left: 8.075486e-03	ci right 8.338170e-03	k: 14935	n:1820000
Cons ci ratio: 1.053302e-01	ci left: 7.203784e-04	ci right 8.010040e-04	k: 1383	n:1820000
KS ci ratio: 1.216890e-02	ci left: 5.361235e-02	ci right 5.426929e-02	k: 98171	n:1820000
KCNC2   1820000 perm   1620 sec   (1123 perm/sec)   p_kst 5.394011e-02   p_cons 7.598901e-04   p_joint 8.206044e-03

Joint ci ratio: 3.202733e-02	ci left: 7.989612e-03	ci right 8.250199e-03	k: 14858	n:1830000
Cons ci ratio: 1.051026e-01	ci left: 7.196343e-04	ci right 7.999919e-04	k: 1389	n:1830000
KS ci ratio: 1.213661e-02	ci left: 5.360486e-02	ci right 5.425994e-02	k: 98695	n:1830000
KCNC2   1830000 perm   1651 sec   (1109 perm/sec)   p_kst 5.393169e-02   p_cons 7.590164e-04   p_joint 8.119126e-03

Joint ci ratio: 3.194255e-02	ci left: 7.988782e-03	ci right 8.248639e-03	k: 14937	n:1840000
Cons ci ratio: 1.047265e-01	ci left: 7.210155e-04	ci right 8.012215e-04	k: 1399	n:1840000
KS ci ratio: 1.210386e-02	ci left: 5.360341e-02	ci right 5.425669e-02	k: 99230	n:1840000
KCNC2   1840000 perm   1680 sec   (1095 perm/sec)   p_kst 5.392935e-02   p_cons 7.603261e-04   p_joint 8.117935e-03

Joint ci ratio: 3.186486e-02	ci left: 7.984744e-03	ci right 8.243827e-03	k: 15010	n:1850000
Cons ci ratio: 1.045401e-01	ci left: 7.197501e-04	ci right 7.996640e-04	k: 1404	n:1850000
KS ci ratio: 1.207202e-02	ci left: 5.359658e-02	ci right 5.424806e-02	k: 99755	n:1850000
KCNC2   1850000 perm   1710 sec   (1082 perm/sec)   p_kst 5.392162e-02   p_cons 7.589189e-04   p_joint 8.113514e-03

Joint ci ratio: 3.177287e-02	ci left: 7.988217e-03	ci right 8.246651e-03	k: 15097	n:1860000
Cons ci ratio: 1.042806e-01	ci left: 7.195456e-04	ci right 7.992264e-04	k: 1411	n:1860000
KS ci ratio: 1.203998e-02	ci left: 5.359359e-02	ci right 5.424329e-02	k: 100287	n:1860000
KCNC2   1860000 perm   1740 sec   (1069 perm/sec)   p_kst 5.391774e-02   p_cons 7.586022e-04   p_joint 8.116667e-03

Joint ci ratio: 3.167011e-02	ci left: 7.997491e-03	ci right 8.255373e-03	k: 15195	n:1870000
Cons ci ratio: 1.039133e-01	ci left: 7.209061e-04	ci right 8.004392e-04	k: 1421	n:1870000
KS ci ratio: 1.200436e-02	ci left: 5.362316e-02	ci right 5.427128e-02	k: 100880	n:1870000
KCNC2   1870000 perm   1755 sec   (1065 perm/sec)   p_kst 5.394652e-02   p_cons 7.598930e-04   p_joint 8.125668e-03

Joint ci ratio: 3.158708e-02	ci left: 7.997168e-03	ci right 8.254351e-03	k: 15275	n:1880000
Cons ci ratio: 1.035136e-01	ci left: 7.227709e-04	ci right 8.021843e-04	k: 1432	n:1880000
KS ci ratio: 1.197329e-02	ci left: 5.361634e-02	ci right 5.426269e-02	k: 101405	n:1880000
KCNC2   1880000 perm   1770 sec   (1062 perm/sec)   p_kst 5.393883e-02   p_cons 7.617021e-04   p_joint 8.125000e-03

Joint ci ratio: 3.148198e-02	ci left: 8.008398e-03	ci right 8.265070e-03	k: 15377	n:1890000
Cons ci ratio: 1.032258e-01	ci left: 7.230701e-04	ci right 8.022821e-04	k: 1440	n:1890000
KS ci ratio: 1.194086e-02	ci left: 5.362332e-02	ci right 5.426799e-02	k: 101956	n:1890000
KCNC2   1890000 perm   1785 sec   (1059 perm/sec)   p_kst 5.394497e-02   p_cons 7.619048e-04   p_joint 8.135979e-03

Joint ci ratio: 3.138814e-02	ci left: 8.014290e-03	ci right 8.270371e-03	k: 15469	n:1900000
Cons ci ratio: 1.029049e-01	ci left: 7.238792e-04	ci right 8.029184e-04	k: 1449	n:1900000
KS ci ratio: 1.190905e-02	ci left: 5.362708e-02	ci right 5.427007e-02	k: 102501	n:1900000
KCNC2   1900000 perm   1800 sec   (1055 perm/sec)   p_kst 5.394789e-02   p_cons 7.626316e-04   p_joint 8.141579e-03

Joint ci ratio: 3.132152e-02	ci left: 8.006613e-03	ci right 8.261897e-03	k: 15535	n:1910000
Cons ci ratio: 1.025870e-01	ci left: 7.246802e-04	ci right 8.035478e-04	k: 1458	n:1910000
KS ci ratio: 1.188061e-02	ci left: 5.360418e-02	ci right 5.424534e-02	k: 102995	n:1910000
KCNC2   1910000 perm   1816 sec   (1052 perm/sec)   p_kst 5.392408e-02   p_cons 7.633508e-04   p_joint 8.133508e-03

Joint ci ratio: 3.124523e-02	ci left: 8.004186e-03	ci right 8.258759e-03	k: 15611	n:1920000
Cons ci ratio: 1.024117e-01	ci left: 7.234432e-04	ci right 8.020335e-04	k: 1463	n:1920000
KS ci ratio: 1.184940e-02	ci left: 5.360696e-02	ci right 5.424647e-02	k: 103538	n:1920000
KCNC2   1920000 perm   1831 sec   (1049 perm/sec)   p_kst 5.392604e-02   p_cons 7.619792e-04   p_joint 8.130729e-03

Joint ci ratio: 3.116049e-02	ci left: 8.006411e-03	ci right 8.260353e-03	k: 15696	n:1930000
Cons ci ratio: 1.018909e-01	ci left: 7.272684e-04	ci right 8.058484e-04	k: 1478	n:1930000
KS ci ratio: 1.181904e-02	ci left: 5.360455e-02	ci right 5.424238e-02	k: 104071	n:1930000
KCNC2   1930000 perm   1854 sec   (1041 perm/sec)   p_kst 5.392280e-02   p_cons 7.658031e-04   p_joint 8.132642e-03

Joint ci ratio: 3.107048e-02	ci left: 8.011684e-03	ci right 8.265045e-03	k: 15787	n:1940000
Cons ci ratio: 1.017192e-01	ci left: 7.260312e-04	ci right 8.043374e-04	k: 1483	n:1940000
KS ci ratio: 1.178903e-02	ci left: 5.360115e-02	ci right 5.423730e-02	k: 104602	n:1940000
KCNC2   1940000 perm   1890 sec   (1027 perm/sec)   p_kst 5.391856e-02   p_cons 7.644330e-04   p_joint 8.137629e-03

Joint ci ratio: 3.099109e-02	ci left: 8.011815e-03	ci right 8.264521e-03	k: 15868	n:1950000
Cons ci ratio: 1.013442e-01	ci left: 7.278058e-04	ci right 8.059968e-04	k: 1494	n:1950000
KS ci ratio: 1.175996e-02	ci left: 5.359164e-02	ci right 5.422610e-02	k: 105121	n:1950000
KCNC2   1950000 perm   1926 sec   (1013 perm/sec)   p_kst 5.390821e-02   p_cons 7.661538e-04   p_joint 8.137436e-03

Joint ci ratio: 3.091425e-02	ci left: 8.010932e-03	ci right 8.262973e-03	k: 15947	n:1960000
Cons ci ratio: 1.011415e-01	ci left: 7.270762e-04	ci right 8.050233e-04	k: 1500	n:1960000
KS ci ratio: 1.172986e-02	ci left: 5.359291e-02	ci right 5.422575e-02	k: 105661	n:1960000
KCNC2   1960000 perm   1957 sec   (1002 perm/sec)   p_kst 5.390867e-02   p_cons 7.653061e-04   p_joint 8.136224e-03

Joint ci ratio: 3.082442e-02	ci left: 8.017112e-03	ci right 8.268601e-03	k: 16040	n:1970000
Cons ci ratio: 1.008062e-01	ci left: 7.283334e-04	ci right 8.061412e-04	k: 1510	n:1970000
KS ci ratio: 1.170082e-02	ci left: 5.358709e-02	ci right 5.421829e-02	k: 106187	n:1970000
KCNC2   1970000 perm   1986 sec   (992 perm/sec)   p_kst 5.390203e-02   p_cons 7.664975e-04   p_joint 8.142132e-03

Joint ci ratio: 3.075843e-02	ci left: 8.011201e-03	ci right 8.261958e-03	k: 16109	n:1980000
Cons ci ratio: 1.005073e-01	ci left: 7.290860e-04	ci right 8.067296e-04	k: 1519	n:1980000
KS ci ratio: 1.167141e-02	ci left: 5.358636e-02	ci right 5.421595e-02	k: 106723	n:1980000
KCNC2   1980000 perm   2002 sec   (989 perm/sec)   p_kst 5.390051e-02   p_cons 7.671717e-04   p_joint 8.135859e-03

Joint ci ratio: 3.050242e-02	ci left: 8.105589e-03	ci right 8.357152e-03	k: 16379	n:1990000
Cons ci ratio: 1.002438e-01	ci left: 7.293415e-04	ci right 8.067966e-04	k: 1527	n:1990000
KS ci ratio: 1.164388e-02	ci left: 5.357111e-02	ci right 5.419903e-02	k: 107230	n:1990000
KCNC2   1990000 perm   2018 sec   (986 perm/sec)   p_kst 5.388442e-02   p_cons 7.673367e-04   p_joint 8.230653e-03

Joint ci ratio: 3.040123e-02	ci left: 8.119147e-03	ci right 8.370280e-03	k: 16488	n:2000000
Cons ci ratio: 9.985236e-02	ci left: 7.315447e-04	ci right 8.089127e-04	k: 1539	n:2000000
KS ci ratio: 1.161342e-02	ci left: 5.358344e-02	ci right 5.420985e-02	k: 107792	n:2000000
KCNC2   2000000 perm   2034 sec   (983 perm/sec)   p_kst 5.389600e-02   p_cons 7.695000e-04   p_joint 8.244000e-03

Outputting figure to mutsig2_images.part000000000088/KCNC2.5_1999_2000000_0.053896_0.0007695_0.008244.png
                gene_name: KCNC2
               theta_stop: 0.100 
                    nperm: 2000000 
                     p_ks: 0.054 
        ci_ks_bounds_left: 0.054 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.00077 
      ci_cons_bounds_left: 0.00073 
     ci_cons_bounds_right: 0.00081 
                  p_joint: 0.0082 
     ci_joint_bounds_left: 0.0081 
    ci_joint_bounds_right: 0.0084 

Current progress: 27 percent done.
KCNH6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.856436e-02	ci left: 4.982503e-01	ci right 5.179450e-01	k: 5081	n:10000
Cons ci ratio: 9.233604e-02	ci left: 1.456039e-01	ci right 1.597991e-01	k: 1526	n:10000
KS ci ratio: 3.255939e-02	ci left: 5.819908e-01	ci right 6.013557e-01	k: 5917	n:10000
KCNH6   10000 perm   2 sec   (5686 perm/sec)   p_kst 5.917000e-01   p_cons 1.526000e-01   p_joint 5.081000e-01

Outputting figure to mutsig2_images.part000000000088/KCNH6.5_3041_10000_0.5917_0.1526_0.5081.png
                gene_name: KCNH6
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 28 percent done.
KCNJ1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.218414e-02	ci left: 4.534885e-01	ci right 4.731329e-01	k: 4633	n:10000
Cons ci ratio: 2.148471e-02	ci left: 7.606116e-01	ci right 7.772314e-01	k: 7690	n:10000
KS ci ratio: 6.877557e-02	ci left: 2.366945e-01	ci right 2.536542e-01	k: 2451	n:10000
KCNJ1   10000 perm   1 sec   (6742 perm/sec)   p_kst 2.451000e-01   p_cons 7.690000e-01   p_joint 4.633000e-01

Outputting figure to mutsig2_images.part000000000088/KCNJ1.5_1184_10000_0.2451_0.769_0.4633.png
                gene_name: KCNJ1
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 30 percent done.
KCNJ2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.346779e-02	ci left: 3.401496e-01	ci right 3.589381e-01	k: 3495	n:10000
Cons ci ratio: 2.356124e-02	ci left: 7.258284e-01	ci right 7.432348e-01	k: 7346	n:10000
KS ci ratio: 7.049003e-02	ci left: 2.278041e-01	ci right 2.445498e-01	k: 2361	n:10000
KCNJ2   10000 perm   2 sec   (6331 perm/sec)   p_kst 2.361000e-01   p_cons 7.346000e-01   p_joint 3.495000e-01

Outputting figure to mutsig2_images.part000000000088/KCNJ2.5_1288_10000_0.2361_0.7346_0.3495.png
                gene_name: KCNJ2
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 31 percent done.
KANK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.749872e-02	ci left: 5.122545e-01	ci right 5.319326e-01	k: 5221	n:10000
Cons ci ratio: 3.481326e-02	ci left: 5.492026e-01	ci right 5.687630e-01	k: 5590	n:10000
KS ci ratio: 3.960380e-02	ci left: 4.849534e-01	ci right 5.046496e-01	k: 4948	n:10000
KANK1   10000 perm   2 sec   (5712 perm/sec)   p_kst 4.948000e-01   p_cons 5.590000e-01   p_joint 5.221000e-01

Outputting figure to mutsig2_images.part000000000088/KANK1.4_4103_10000_0.4948_0.559_0.5221.png
                gene_name: KANK1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 33 percent done.
KAT2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.247189e-02	ci left: 5.832952e-01	ci right 6.026506e-01	k: 5930	n:10000
Cons ci ratio: 8.369350e-02	ci left: 1.723174e-01	ci right 1.874696e-01	k: 1798	n:10000
KS ci ratio: 3.255266e-02	ci left: 5.820912e-01	ci right 6.014553e-01	k: 5918	n:10000
KAT2B   10000 perm   2 sec   (5338 perm/sec)   p_kst 5.918000e-01   p_cons 1.798000e-01   p_joint 5.930000e-01

Outputting figure to mutsig2_images.part000000000088/KAT2B.4_2571_10000_0.5918_0.1798_0.593.png
                gene_name: KAT2B
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 34 percent done.
KBTBD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.487959e-02	ci left: 1.388391e-01	ci right 1.527680e-01	k: 1457	n:10000
Cons ci ratio: 2.221280e-01	ci left: 2.683859e-02	ci right 3.363872e-02	k: 301	n:10000
KS ci ratio: 2.397830e-02	ci left: 7.188599e-01	ci right 7.364073e-01	k: 7277	n:10000
KBTBD3   10000 perm   2 sec   (6094 perm/sec)   p_kst 7.277000e-01   p_cons 3.010000e-02   p_joint 1.457000e-01

Joint ci ratio: 5.010136e-02	ci left: 2.284438e-01	ci right 2.402335e-01	k: 4686	n:20000
Cons ci ratio: 1.550971e-01	ci left: 2.854513e-02	ci right 3.339250e-02	k: 618	n:20000
KS ci ratio: 1.679089e-02	ci left: 7.253500e-01	ci right 7.376827e-01	k: 14631	n:20000
KBTBD3   20000 perm   4 sec   (5430 perm/sec)   p_kst 7.315500e-01   p_cons 3.090000e-02   p_joint 2.343000e-01

Joint ci ratio: 5.161318e-02	ci left: 1.570883e-01	ci right 1.654441e-01	k: 4837	n:30000
Cons ci ratio: 1.280313e-01	ci left: 2.835696e-02	ci right 3.226803e-02	k: 908	n:30000
KS ci ratio: 1.375341e-02	ci left: 7.252392e-01	ci right 7.353162e-01	k: 21909	n:30000
KBTBD3   30000 perm   6 sec   (5091 perm/sec)   p_kst 7.303000e-01   p_cons 3.026667e-02   p_joint 1.612333e-01

Joint ci ratio: 4.650205e-02	ci left: 1.473308e-01	ci right 1.543700e-01	k: 6033	n:40000
Cons ci ratio: 1.111153e-01	ci left: 2.849591e-02	ci right 3.187275e-02	k: 1206	n:40000
KS ci ratio: 1.191159e-02	ci left: 7.258966e-01	ci right 7.346200e-01	k: 29211	n:40000
KBTBD3   40000 perm   8 sec   (4958 perm/sec)   p_kst 7.302750e-01   p_cons 3.015000e-02   p_joint 1.508250e-01

Joint ci ratio: 4.118681e-02	ci left: 1.502118e-01	ci right 1.565485e-01	k: 7668	n:50000
Cons ci ratio: 9.927462e-02	ci left: 2.873679e-02	ci right 3.175808e-02	k: 1511	n:50000
KS ci ratio: 1.066367e-02	ci left: 7.260050e-01	ci right 7.338083e-01	k: 36496	n:50000
KBTBD3   50000 perm   10 sec   (4845 perm/sec)   p_kst 7.299200e-01   p_cons 3.022000e-02   p_joint 1.533600e-01

Outputting figure to mutsig2_images.part000000000088/KBTBD3.4_1847_50000_0.72992_0.03022_0.15336.png
                gene_name: KBTBD3
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.030 
      ci_cons_bounds_left: 0.029 
     ci_cons_bounds_right: 0.032 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 36 percent done.
KBTBD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.921578e-02	ci left: 1.888498e-01	ci right 2.045273e-01	k: 1966	n:10000
Cons ci ratio: 4.168713e-02	ci left: 4.593790e-01	ci right 4.790390e-01	k: 4692	n:10000
KS ci ratio: 8.664465e-02	ci left: 1.624881e-01	ci right 1.773047e-01	k: 1698	n:10000
KBTBD4   10000 perm   1 sec   (6789 perm/sec)   p_kst 1.698000e-01   p_cons 4.692000e-01   p_joint 1.966000e-01

Outputting figure to mutsig2_images.part000000000088/KBTBD4.4_1621_10000_0.1698_0.4692_0.1966.png
                gene_name: KBTBD4
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 38 percent done.
KCNA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.541650e-02	ci left: 1.374671e-01	ci right 1.513407e-01	k: 1443	n:10000
Cons ci ratio: 4.654243e-02	ci left: 4.052191e-01	ci right 4.246305e-01	k: 4149	n:10000
KS ci ratio: 1.372648e-01	ci left: 7.020239e-02	ci right 8.064655e-02	k: 753	n:10000
KCNA6   10000 perm   1 sec   (6739 perm/sec)   p_kst 7.530000e-02   p_cons 4.149000e-01   p_joint 1.443000e-01

Joint ci ratio: 8.697452e-02	ci left: 8.817594e-02	ci right 9.624307e-02	k: 1843	n:20000
Cons ci ratio: 3.249014e-02	ci left: 4.143439e-01	ci right 4.280790e-01	k: 8424	n:20000
KS ci ratio: 9.661324e-02	ci left: 7.236421e-02	ci right 7.975961e-02	k: 1520	n:20000
KCNA6   20000 perm   3 sec   (6051 perm/sec)   p_kst 7.600000e-02   p_cons 4.212000e-01   p_joint 9.215000e-02

Outputting figure to mutsig2_images.part000000000088/KCNA6.4_1594_20000_0.076_0.4212_0.09215.png
                gene_name: KCNA6
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.076 
        ci_ks_bounds_left: 0.072 
       ci_ks_bounds_right: 0.080 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.092 
     ci_joint_bounds_left: 0.088 
    ci_joint_bounds_right: 0.096 

Current progress: 39 percent done.
KCNC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.476387e-02	ci left: 5.499041e-01	ci right 5.694611e-01	k: 5597	n:10000
Cons ci ratio: 7.413363e-02	ci left: 2.103351e-01	ci right 2.266292e-01	k: 2184	n:10000
KS ci ratio: 2.728533e-02	ci left: 6.643103e-01	ci right 6.827885e-01	k: 6736	n:10000
KCNC3   10000 perm   2 sec   (6514 perm/sec)   p_kst 6.736000e-01   p_cons 2.184000e-01   p_joint 5.597000e-01

Outputting figure to mutsig2_images.part000000000088/KCNC3.4_2290_10000_0.6736_0.2184_0.5597.png
                gene_name: KCNC3
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 41 percent done.
KCND3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.705782e-02	ci left: 5.181586e-01	ci right 5.378251e-01	k: 5280	n:10000
Cons ci ratio: 9.219358e-02	ci left: 1.459962e-01	ci right 1.602065e-01	k: 1530	n:10000
KS ci ratio: 3.797479e-02	ci left: 5.059517e-01	ci right 5.256391e-01	k: 5158	n:10000
KCND3   10000 perm   2 sec   (6298 perm/sec)   p_kst 5.158000e-01   p_cons 1.530000e-01   p_joint 5.280000e-01

Outputting figure to mutsig2_images.part000000000088/KCND3.4_1996_10000_0.5158_0.153_0.528.png
                gene_name: KCND3
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 42 percent done.
KCNIP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.792921e-02	ci left: 5.065519e-01	ci right 5.262386e-01	k: 5164	n:10000
Cons ci ratio: 2.024168e-02	ci left: 7.813762e-01	ci right 7.974549e-01	k: 7895	n:10000
KS ci ratio: 4.207405e-02	ci left: 4.547863e-01	ci right 4.744343e-01	k: 4646	n:10000
KCNIP4   10000 perm   1 sec   (6698 perm/sec)   p_kst 4.646000e-01   p_cons 7.895000e-01   p_joint 5.164000e-01

Outputting figure to mutsig2_images.part000000000088/KCNIP4.4_922_10000_0.4646_0.7895_0.5164.png
                gene_name: KCNIP4
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 44 percent done.
JUN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.424278e-02	ci left: 4.299405e-01	ci right 4.494947e-01	k: 4397	n:10000
Cons ci ratio: 3.404318e-02	ci left: 5.602275e-01	ci right 5.797317e-01	k: 5700	n:10000
KS ci ratio: 5.580505e-02	ci left: 3.210824e-01	ci right 3.396165e-01	k: 3303	n:10000
JUN   10000 perm   1 sec   (7873 perm/sec)   p_kst 3.303000e-01   p_cons 5.700000e-01   p_joint 4.397000e-01

Outputting figure to mutsig2_images.part000000000088/JUN.3_1000_10000_0.3303_0.57_0.4397.png
                gene_name: JUN
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 45 percent done.
KATNAL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.079590e-03	ci left: 9.734446e-01	ci right 9.794734e-01	k: 9766	n:10000
KS ci ratio: 6.540739e-03	ci left: 9.696322e-01	ci right 9.760884e-01	k: 9730	n:10000
KATNAL2   10000 perm   1 sec   (6906 perm/sec)   p_kst 9.730000e-01   p_cons 9.766000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000088/KATNAL2.3_1457_10000_0.973_0.9766_1.png
                gene_name: KATNAL2
               theta_stop: 0.0065 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 47 percent done.
KAZ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.756493e-02	ci left: 6.597794e-01	ci right 6.783220e-01	k: 6691	n:10000
Cons ci ratio: 3.743866e-02	ci left: 5.130550e-01	ci right 5.327317e-01	k: 5229	n:10000
KS ci ratio: 4.538307e-02	ci left: 4.174770e-01	ci right 4.369654e-01	k: 4272	n:10000
KAZ   10000 perm   1 sec   (6891 perm/sec)   p_kst 4.272000e-01   p_cons 5.229000e-01   p_joint 6.691000e-01

Outputting figure to mutsig2_images.part000000000088/KAZ.3_2644_10000_0.4272_0.5229_0.6691.png
                gene_name: KAZ
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 48 percent done.
KBTBD10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.812068e-02	ci left: 6.508212e-01	ci right 6.694854e-01	k: 6602	n:10000
Cons ci ratio: 5.534169e-02	ci left: 3.247555e-01	ci right 3.433413e-01	k: 3340	n:10000
KS ci ratio: 3.133409e-02	ci left: 6.004598e-01	ci right 6.196761e-01	k: 6101	n:10000
KBTBD10   10000 perm   1 sec   (6722 perm/sec)   p_kst 6.101000e-01   p_cons 3.340000e-01   p_joint 6.602000e-01

Outputting figure to mutsig2_images.part000000000088/KBTBD10.3_1845_10000_0.6101_0.334_0.6602.png
                gene_name: KBTBD10
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 50 percent done.
KBTBD12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.505766e-02	ci left: 7.008953e-01	ci right 7.187823e-01	k: 7099	n:10000
Cons ci ratio: 4.766254e-02	ci left: 3.937641e-01	ci right 4.130922e-01	k: 4034	n:10000
KS ci ratio: 4.204869e-02	ci left: 4.550858e-01	ci right 4.747347e-01	k: 4649	n:10000
KBTBD12   10000 perm   1 sec   (6863 perm/sec)   p_kst 4.649000e-01   p_cons 4.034000e-01   p_joint 7.099000e-01

Outputting figure to mutsig2_images.part000000000088/KBTBD12.3_1892_10000_0.4649_0.4034_0.7099.png
                gene_name: KBTBD12
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 52 percent done.
KBTBD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.002557e-01	ci left: 1.259128e-01	ci right 1.393020e-01	k: 1325	n:10000
Cons ci ratio: 3.716947e-02	ci left: 5.166574e-01	ci right 5.363271e-01	k: 5265	n:10000
KS ci ratio: 1.200793e-01	ci left: 9.048895e-02	ci right 1.021474e-01	k: 962	n:10000
KBTBD2   10000 perm   1 sec   (6994 perm/sec)   p_kst 9.620000e-02   p_cons 5.265000e-01   p_joint 1.325000e-01

Joint ci ratio: 7.139006e-02	ci left: 1.263036e-01	ci right 1.357040e-01	k: 2619	n:20000
Cons ci ratio: 2.669869e-02	ci left: 5.117480e-01	ci right 5.256465e-01	k: 10374	n:20000
KS ci ratio: 8.464332e-02	ci left: 9.273591e-02	ci right 1.009817e-01	k: 1936	n:20000
KBTBD2   20000 perm   3 sec   (6207 perm/sec)   p_kst 9.680000e-02   p_cons 5.187000e-01   p_joint 1.309500e-01

Outputting figure to mutsig2_images.part000000000088/KBTBD2.3_1884_20000_0.0968_0.5187_0.13095.png
                gene_name: KBTBD2
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.097 
        ci_ks_bounds_left: 0.093 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 53 percent done.
KBTBD5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.188540e-01	ci left: 9.224042e-02	ci right 1.039949e-01	k: 980	n:10000
Cons ci ratio: 1.320333e-01	ci left: 7.562816e-02	ci right 8.641740e-02	k: 809	n:10000
KS ci ratio: 1.734323e-01	ci left: 4.437162e-02	ci right 5.289379e-02	k: 485	n:10000
KBTBD5   10000 perm   1 sec   (7057 perm/sec)   p_kst 4.850000e-02   p_cons 8.090000e-02   p_joint 9.800000e-02

Joint ci ratio: 1.229040e-01	ci left: 4.541801e-02	ci right 5.141416e-02	k: 967	n:20000
Cons ci ratio: 9.402830e-02	ci left: 7.617855e-02	ci right 8.374410e-02	k: 1598	n:20000
KS ci ratio: 1.279880e-01	ci left: 4.192594e-02	ci right 4.770733e-02	k: 895	n:20000
KBTBD5   20000 perm   3 sec   (6238 perm/sec)   p_kst 4.475000e-02   p_cons 7.990000e-02   p_joint 4.835000e-02

Joint ci ratio: 1.821674e-01	ci left: 1.381413e-02	ci right 1.661424e-02	k: 455	n:30000
Cons ci ratio: 7.685270e-02	ci left: 7.672497e-02	ci right 8.289002e-02	k: 2393	n:30000
KS ci ratio: 1.046249e-01	ci left: 4.235666e-02	ci right 4.706535e-02	k: 1340	n:30000
KBTBD5   30000 perm   5 sec   (5893 perm/sec)   p_kst 4.466667e-02   p_cons 7.976667e-02   p_joint 1.516667e-02

Joint ci ratio: 6.489198e-02	ci left: 8.088070e-02	ci right 8.632993e-02	k: 3343	n:40000
Cons ci ratio: 6.626379e-02	ci left: 7.777796e-02	ci right 8.313313e-02	k: 3217	n:40000
KS ci ratio: 8.750253e-02	ci left: 4.568071e-02	ci right 4.988525e-02	k: 1910	n:40000
KBTBD5   40000 perm   7 sec   (5705 perm/sec)   p_kst 4.775000e-02   p_cons 8.042500e-02   p_joint 8.357500e-02

Outputting figure to mutsig2_images.part000000000088/KBTBD5.3_1890_40000_0.04775_0.080425_0.083575.png
                gene_name: KBTBD5
               theta_stop: 0.088 
                    nperm: 40000 
                     p_ks: 0.048 
        ci_ks_bounds_left: 0.046 
       ci_ks_bounds_right: 0.050 
                   p_cons: 0.080 
      ci_cons_bounds_left: 0.078 
     ci_cons_bounds_right: 0.083 
                  p_joint: 0.084 
     ci_joint_bounds_left: 0.081 
    ci_joint_bounds_right: 0.086 

Current progress: 55 percent done.
KCNA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.471734e-02	ci left: 8.698917e-01	ci right 8.828882e-01	k: 8765	n:10000
KS ci ratio: 1.969865e-02	ci left: 7.904003e-01	ci right 8.062255e-01	k: 7984	n:10000
KCNA1   10000 perm   3 sec   (3171 perm/sec)   p_kst 7.984000e-01   p_cons 8.765000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000088/KCNA1.3_1492_10000_0.7984_0.8765_1.png
                gene_name: KCNA1
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 56 percent done.
KCNA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.662210e-02	ci left: 3.147305e-01	ci right 3.331722e-01	k: 3239	n:10000
Cons ci ratio: 9.107243e-02	ci left: 1.491353e-01	ci right 1.634655e-01	k: 1562	n:10000
KS ci ratio: 8.452535e-02	ci left: 1.694660e-01	ci right 1.845227e-01	k: 1769	n:10000
KCNA3   10000 perm   3 sec   (2970 perm/sec)   p_kst 1.769000e-01   p_cons 1.562000e-01   p_joint 3.239000e-01

Outputting figure to mutsig2_images.part000000000088/KCNA3.3_1732_10000_0.1769_0.1562_0.3239.png
                gene_name: KCNA3
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 58 percent done.
KCNF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.013815e-02	ci left: 7.830994e-01	ci right 7.991306e-01	k: 7912	n:10000
Cons ci ratio: 3.731132e-02	ci left: 5.147561e-01	ci right 5.344296e-01	k: 5246	n:10000
KS ci ratio: 1.050197e-02	ci left: 9.280257e-01	ci right 9.379203e-01	k: 9331	n:10000
KCNF1   10000 perm   3 sec   (3302 perm/sec)   p_kst 9.331000e-01   p_cons 5.246000e-01   p_joint 7.912000e-01

Outputting figure to mutsig2_images.part000000000088/KCNF1.3_1489_10000_0.9331_0.5246_0.7912.png
                gene_name: KCNF1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 59 percent done.
KCNG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.743116e-02	ci left: 5.131551e-01	ci right 5.328315e-01	k: 5230	n:10000
KS ci ratio: 2.184117e-02	ci left: 7.546407e-01	ci right 7.714058e-01	k: 7631	n:10000
KCNG1   10000 perm   3 sec   (3221 perm/sec)   p_kst 7.631000e-01   p_cons 5.230000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000088/KCNG1.3_1550_10000_0.7631_0.523_1.png
                gene_name: KCNG1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 61 percent done.
KCNG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.190330e-02	ci left: 5.918258e-01	ci right 6.111151e-01	k: 6015	n:10000
Cons ci ratio: 1.723077e-02	ci left: 8.307321e-01	ci right 8.452705e-01	k: 8381	n:10000
KS ci ratio: 5.045670e-02	ci left: 3.667920e-01	ci right 3.858801e-01	k: 3763	n:10000
KCNG2   10000 perm   4 sec   (2457 perm/sec)   p_kst 3.763000e-01   p_cons 8.381000e-01   p_joint 6.015000e-01

Outputting figure to mutsig2_images.part000000000088/KCNG2.3_1408_10000_0.3763_0.8381_0.6015.png
                gene_name: KCNG2
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 62 percent done.
KCNH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.323372e-02	ci left: 4.413126e-01	ci right 4.609159e-01	k: 4511	n:10000
Cons ci ratio: 4.070444e-02	ci left: 4.712639e-01	ci right 4.909471e-01	k: 4811	n:10000
KS ci ratio: 5.304723e-02	ci left: 3.437266e-01	ci right 3.625590e-01	k: 3531	n:10000
KCNH2   10000 perm   6 sec   (1757 perm/sec)   p_kst 3.531000e-01   p_cons 4.811000e-01   p_joint 4.511000e-01

Outputting figure to mutsig2_images.part000000000088/KCNH2.3_3921_10000_0.3531_0.4811_0.4511.png
                gene_name: KCNH2
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 64 percent done.
KCNJ10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.834238e-02	ci left: 8.127337e-01	ci right 8.278793e-01	k: 8204	n:10000
KS ci ratio: 2.066714e-02	ci left: 7.742826e-01	ci right 7.905526e-01	k: 7825	n:10000
KCNJ10   10000 perm   4 sec   (2679 perm/sec)   p_kst 7.825000e-01   p_cons 8.204000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000088/KCNJ10.3_1144_10000_0.7825_0.8204_1.png
                gene_name: KCNJ10
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 66 percent done.
KCNJ4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.972063e-02	ci left: 1.868804e-01	ci right 2.024978e-01	k: 1946	n:10000
Cons ci ratio: 2.473410e-01	ci left: 2.146516e-02	ci right 2.761609e-02	k: 244	n:10000
KS ci ratio: 6.877557e-02	ci left: 2.366945e-01	ci right 2.536542e-01	k: 2451	n:10000
KCNJ4   10000 perm   3 sec   (3246 perm/sec)   p_kst 2.451000e-01   p_cons 2.440000e-02   p_joint 1.946000e-01

Joint ci ratio: 3.495575e-02	ci left: 3.792450e-01	ci right 3.927882e-01	k: 7720	n:20000
Cons ci ratio: 1.710052e-01	ci left: 2.340739e-02	ci right 2.783199e-02	k: 511	n:20000
KS ci ratio: 4.876383e-02	ci left: 2.382089e-01	ci right 2.501655e-01	k: 4883	n:20000
KCNJ4   20000 perm   7 sec   (2783 perm/sec)   p_kst 2.441500e-01   p_cons 2.555000e-02   p_joint 3.860000e-01

Joint ci ratio: 3.082888e-02	ci left: 3.447668e-01	ci right 3.555956e-01	k: 10505	n:30000
Cons ci ratio: 1.369945e-01	ci left: 2.474400e-02	ci right 2.841512e-02	k: 796	n:30000
KS ci ratio: 4.016018e-02	ci left: 2.361689e-01	ci right 2.458813e-01	k: 7230	n:30000
KCNJ4   30000 perm   11 sec   (2643 perm/sec)   p_kst 2.410000e-01   p_cons 2.653333e-02   p_joint 3.501667e-01

Joint ci ratio: 3.729136e-02	ci left: 2.123976e-01	ci right 2.204936e-01	k: 8657	n:40000
Cons ci ratio: 1.201995e-01	ci left: 2.434115e-02	ci right 2.747819e-02	k: 1035	n:40000
KS ci ratio: 3.474022e-02	ci left: 2.372376e-01	ci right 2.456500e-01	k: 9657	n:40000
KCNJ4   40000 perm   16 sec   (2554 perm/sec)   p_kst 2.414250e-01   p_cons 2.587500e-02   p_joint 2.164250e-01

Joint ci ratio: 2.505866e-02	ci left: 3.244630e-01	ci right 3.327169e-01	k: 16429	n:50000
Cons ci ratio: 1.060888e-01	ci left: 2.516815e-02	ci right 2.800718e-02	k: 1328	n:50000
KS ci ratio: 3.096528e-02	ci left: 2.389472e-01	ci right 2.464827e-01	k: 12135	n:50000
KCNJ4   50000 perm   20 sec   (2502 perm/sec)   p_kst 2.427000e-01   p_cons 2.656000e-02   p_joint 3.285800e-01

Joint ci ratio: 2.178733e-02	ci left: 3.466147e-01	ci right 3.542664e-01	k: 21026	n:60000
Cons ci ratio: 9.696429e-02	ci left: 2.522943e-02	ci right 2.781664e-02	k: 1590	n:60000
KS ci ratio: 2.830094e-02	ci left: 2.388426e-01	ci right 2.457157e-01	k: 14536	n:60000
KCNJ4   60000 perm   25 sec   (2428 perm/sec)   p_kst 2.422667e-01   p_cons 2.650000e-02   p_joint 3.504333e-01

Outputting figure to mutsig2_images.part000000000088/KCNJ4.3_1342_60000_0.24227_0.0265_0.35043.png
                gene_name: KCNJ4
               theta_stop: 0.097 
                    nperm: 60000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.026 
      ci_cons_bounds_left: 0.025 
     ci_cons_bounds_right: 0.028 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.35 

Current progress: 67 percent done.
KCNJ6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.747619e-02	ci left: 5.125547e-01	ci right 5.322323e-01	k: 5224	n:10000
KS ci ratio: 2.191967e-02	ci left: 7.533254e-01	ci right 7.701219e-01	k: 7618	n:10000
KCNJ6   10000 perm   3 sec   (3109 perm/sec)   p_kst 7.618000e-01   p_cons 5.224000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000088/KCNJ6.3_1284_10000_0.7618_0.5224_1.png
                gene_name: KCNJ6
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 69 percent done.
KCNJ8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.153307e-02	ci left: 7.598019e-01	ci right 7.764417e-01	k: 7682	n:10000
Cons ci ratio: 3.700582e-02	ci left: 5.188592e-01	ci right 5.385241e-01	k: 5287	n:10000
KS ci ratio: 2.512457e-02	ci left: 6.997857e-01	ci right 7.176926e-01	k: 7088	n:10000
KCNJ8   10000 perm   3 sec   (3080 perm/sec)   p_kst 7.088000e-01   p_cons 5.287000e-01   p_joint 7.682000e-01

Outputting figure to mutsig2_images.part000000000088/KCNJ8.3_1283_10000_0.7088_0.5287_0.7682.png
                gene_name: KCNJ8
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 70 percent done.
KCNJ9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.485020e-02	ci left: 2.588428e-01	ci right 2.762928e-01	k: 2675	n:10000
Cons ci ratio: 1.443225e-01	ci left: 6.372193e-02	ci right 7.373108e-02	k: 686	n:10000
KS ci ratio: 3.333331e-02	ci left: 5.705552e-01	ci right 5.899980e-01	k: 5803	n:10000
KCNJ9   10000 perm   3 sec   (3360 perm/sec)   p_kst 5.803000e-01   p_cons 6.860000e-02   p_joint 2.675000e-01

Joint ci ratio: 4.728455e-02	ci left: 2.496648e-01	ci right 2.618063e-01	k: 5114	n:20000
Cons ci ratio: 1.047389e-01	ci left: 6.201199e-02	ci right 6.891500e-02	k: 1308	n:20000
KS ci ratio: 2.354499e-02	ci left: 5.739753e-01	ci right 5.877012e-01	k: 11617	n:20000
KCNJ9   20000 perm   7 sec   (2913 perm/sec)   p_kst 5.808500e-01   p_cons 6.540000e-02   p_joint 2.557000e-01

Joint ci ratio: 5.648417e-02	ci left: 1.344121e-01	ci right 1.422581e-01	k: 4149	n:30000
Cons ci ratio: 8.504552e-02	ci left: 6.331395e-02	ci right 6.897043e-02	k: 1983	n:30000
KS ci ratio: 1.920965e-02	ci left: 5.756263e-01	ci right 5.868247e-01	k: 17437	n:30000
KCNJ9   30000 perm   11 sec   (2655 perm/sec)   p_kst 5.812333e-01   p_cons 6.610000e-02   p_joint 1.383000e-01

Outputting figure to mutsig2_images.part000000000088/KCNJ9.3_1190_30000_0.58123_0.0661_0.1383.png
                gene_name: KCNJ9
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.066 
      ci_cons_bounds_left: 0.063 
     ci_cons_bounds_right: 0.069 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 72 percent done.
JUND
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.047280e-02	ci left: 7.775249e-01	ci right 7.937083e-01	k: 7857	n:10000
Cons ci ratio: 3.551046e-02	ci left: 5.393846e-01	ci right 5.589867e-01	k: 5492	n:10000
KS ci ratio: 3.032889e-02	ci left: 6.159285e-01	ci right 6.349984e-01	k: 6255	n:10000
JUND   10000 perm   3 sec   (3321 perm/sec)   p_kst 6.255000e-01   p_cons 5.492000e-01   p_joint 7.857000e-01

Outputting figure to mutsig2_images.part000000000088/JUND.2_1048_10000_0.6255_0.5492_0.7857.png
                gene_name: JUND
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.79 

Current progress: 73 percent done.
KAL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.678422e-02	ci left: 6.724682e-01	ci right 6.908258e-01	k: 6817	n:10000
KS ci ratio: 8.627786e-02	ci left: 1.636672e-01	ci right 1.785250e-01	k: 1710	n:10000
KAL1   10000 perm   4 sec   (2414 perm/sec)   p_kst 1.710000e-01   p_cons 6.817000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000088/KAL1.2_2099_10000_0.171_0.6817_1.png
                gene_name: KAL1
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
KARS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.024951e-01	ci left: 1.210221e-01	ci right 1.341957e-01	k: 1275	n:10000
KS ci ratio: 4.639896e-02	ci left: 4.067137e-01	ci right 4.261351e-01	k: 4164	n:10000
KARS   10000 perm   3 sec   (3102 perm/sec)   p_kst 4.164000e-01   p_cons 1.275000e-01   p_joint 1

Joint ci ratio: 2.742702e-02	ci left: 4.982955e-01	ci right 5.122030e-01	k: 10105	n:20000
Cons ci ratio: 7.306820e-02	ci left: 1.211844e-01	ci right 1.304247e-01	k: 2515	n:20000
KS ci ratio: 3.286611e-02	ci left: 4.087576e-01	ci right 4.224669e-01	k: 8312	n:20000
KARS   20000 perm   7 sec   (2795 perm/sec)   p_kst 4.156000e-01   p_cons 1.257500e-01   p_joint 5.052500e-01

Outputting figure to mutsig2_images.part000000000088/KARS.2_2000_20000_0.4156_0.12575_0.50525.png
                gene_name: KARS
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.51 

Current progress: 77 percent done.
KATNA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.659946e-02	ci left: 5.243644e-01	ci right 5.440157e-01	k: 5342	n:10000
KS ci ratio: 5.028991e-03	ci left: 9.812374e-01	ci right 9.862751e-01	k: 9839	n:10000
KATNA1   10000 perm   2 sec   (5083 perm/sec)   p_kst 9.839000e-01   p_cons 5.342000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000088/KATNA1.2_1516_10000_0.9839_0.5342_1.png
                gene_name: KATNA1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
KBTBD6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.394779e-01	ci left: 6.807308e-02	ci right 7.837719e-02	k: 731	n:10000
Cons ci ratio: 1.822799e-01	ci left: 4.015916e-02	ci right 4.830902e-02	k: 441	n:10000
KS ci ratio: 8.346729e-02	ci left: 1.731041e-01	ci right 1.882824e-01	k: 1806	n:10000
KBTBD6   10000 perm   4 sec   (2348 perm/sec)   p_kst 1.806000e-01   p_cons 4.410000e-02   p_joint 7.310000e-02

Joint ci ratio: 1.525718e-01	ci left: 2.950774e-02	ci right 3.442957e-02	k: 638	n:20000
Cons ci ratio: 1.259415e-01	ci left: 4.328340e-02	ci right 4.914944e-02	k: 923	n:20000
KS ci ratio: 5.935211e-02	ci left: 1.737090e-01	ci right 1.843844e-01	k: 3580	n:20000
KBTBD6   20000 perm   10 sec   (1971 perm/sec)   p_kst 1.790000e-01   p_cons 4.615000e-02   p_joint 3.190000e-02

Joint ci ratio: 1.115522e-01	ci left: 3.732391e-02	ci right 4.176583e-02	k: 1185	n:30000
Cons ci ratio: 1.034592e-01	ci left: 4.329927e-02	ci right 4.805588e-02	k: 1369	n:30000
KS ci ratio: 4.813117e-02	ci left: 1.766906e-01	ci right 1.854379e-01	k: 5431	n:30000
KBTBD6   30000 perm   14 sec   (2075 perm/sec)   p_kst 1.810333e-01   p_cons 4.563333e-02   p_joint 3.950000e-02

Joint ci ratio: 7.001240e-02	ci left: 7.012494e-02	ci right 7.523731e-02	k: 2906	n:40000
Cons ci ratio: 9.047581e-02	ci left: 4.279337e-02	ci right 4.687304e-02	k: 1792	n:40000
KS ci ratio: 4.197214e-02	ci left: 1.752541e-01	ci right 1.827925e-01	k: 7160	n:40000
KBTBD6   40000 perm   18 sec   (2180 perm/sec)   p_kst 1.790000e-01   p_cons 4.480000e-02   p_joint 7.265000e-02

Outputting figure to mutsig2_images.part000000000088/KBTBD6.2_2029_40000_0.179_0.0448_0.07265.png
                gene_name: KBTBD6
               theta_stop: 0.090 
                    nperm: 40000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.045 
      ci_cons_bounds_left: 0.043 
     ci_cons_bounds_right: 0.047 
                  p_joint: 0.073 
     ci_joint_bounds_left: 0.070 
    ci_joint_bounds_right: 0.075 

Current progress: 80 percent done.
KBTBD7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.624658e-02	ci left: 4.083079e-01	ci right 4.277399e-01	k: 4180	n:10000
Cons ci ratio: 2.196193e-02	ci left: 7.526172e-01	ci right 7.694305e-01	k: 7611	n:10000
KS ci ratio: 6.943212e-02	ci left: 2.332365e-01	ci right 2.501142e-01	k: 2416	n:10000
KBTBD7   10000 perm   3 sec   (3303 perm/sec)   p_kst 2.416000e-01   p_cons 7.611000e-01   p_joint 4.180000e-01

Outputting figure to mutsig2_images.part000000000088/KBTBD7.2_2059_10000_0.2416_0.7611_0.418.png
                gene_name: KBTBD7
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 81 percent done.
KCNA10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.728838e-02	ci left: 3.975486e-01	ci right 4.169054e-01	k: 4072	n:10000
KS ci ratio: 1.777991e-02	ci left: 8.218818e-01	ci right 8.367259e-01	k: 8294	n:10000
KCNA10   10000 perm   2 sec   (4672 perm/sec)   p_kst 8.294000e-01   p_cons 4.072000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000088/KCNA10.2_1540_10000_0.8294_0.4072_1.png
                gene_name: KCNA10
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
KCNA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.639009e-02	ci left: 6.789163e-01	ci right 6.971741e-01	k: 6881	n:10000
Cons ci ratio: 3.075105e-02	ci left: 6.093982e-01	ci right 6.285324e-01	k: 6190	n:10000
KS ci ratio: 3.185675e-02	ci left: 5.925284e-01	ci right 6.118120e-01	k: 6022	n:10000
KCNA2   10000 perm   1 sec   (6925 perm/sec)   p_kst 6.022000e-01   p_cons 6.190000e-01   p_joint 6.881000e-01

Outputting figure to mutsig2_images.part000000000088/KCNA2.2_1504_10000_0.6022_0.619_0.6881.png
                gene_name: KCNA2
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 84 percent done.
KCNAB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.810253e-03	ci left: 9.579609e-01	ci right 9.655670e-01	k: 9619	n:10000
Cons ci ratio: 3.087503e-02	ci left: 6.074897e-01	ci right 6.266420e-01	k: 6171	n:10000
KS ci ratio: 2.223354e-02	ci left: 7.480651e-01	ci right 7.649852e-01	k: 7566	n:10000
KCNAB2   10000 perm   1 sec   (7259 perm/sec)   p_kst 7.566000e-01   p_cons 6.171000e-01   p_joint 9.619000e-01

Outputting figure to mutsig2_images.part000000000088/KCNAB2.2_1164_10000_0.7566_0.6171_0.9619.png
                gene_name: KCNAB2
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 86 percent done.
KCND1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.260658e-02	ci left: 5.812885e-01	ci right 6.006585e-01	k: 5910	n:10000
Cons ci ratio: 2.216715e-02	ci left: 7.491777e-01	ci right 7.660720e-01	k: 7577	n:10000
KS ci ratio: 6.478410e-02	ci left: 2.592386e-01	ci right 2.766968e-01	k: 2679	n:10000
KCND1   10000 perm   1 sec   (6712 perm/sec)   p_kst 2.679000e-01   p_cons 7.577000e-01   p_joint 5.910000e-01

Outputting figure to mutsig2_images.part000000000088/KCND1.2_1968_10000_0.2679_0.7577_0.591.png
                gene_name: KCND1
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 88 percent done.
KCNE4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.040300e-02	ci left: 3.672894e-01	ci right 3.863825e-01	k: 3768	n:10000
Cons ci ratio: 3.885856e-02	ci left: 4.944505e-01	ci right 5.141470e-01	k: 5043	n:10000
KS ci ratio: 8.072598e-02	ci left: 1.830411e-01	ci right 1.985394e-01	k: 1907	n:10000
KCNE4   10000 perm   1 sec   (7316 perm/sec)   p_kst 1.907000e-01   p_cons 5.043000e-01   p_joint 3.768000e-01

Outputting figure to mutsig2_images.part000000000088/KCNE4.2_517_10000_0.1907_0.5043_0.3768.png
                gene_name: KCNE4
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 89 percent done.
KCNIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.514666e-02	ci left: 2.057986e-01	ci right 2.219684e-01	k: 2138	n:10000
KS ci ratio: 3.276867e-02	ci left: 5.788806e-01	ci right 5.982678e-01	k: 5886	n:10000
KCNIP1   10000 perm   1 sec   (7698 perm/sec)   p_kst 5.886000e-01   p_cons 2.138000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000088/KCNIP1.2_812_10000_0.5886_0.2138_1.png
                gene_name: KCNIP1
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
KCNIP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.869771e-02	ci left: 3.835091e-01	ci right 4.027532e-01	k: 3931	n:10000
KS ci ratio: 5.781958e-02	ci left: 3.057022e-01	ci right 3.240057e-01	k: 3148	n:10000
KCNIP3   10000 perm   1 sec   (7472 perm/sec)   p_kst 3.148000e-01   p_cons 3.931000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000088/KCNIP3.2_914_10000_0.3148_0.3931_1.png
                gene_name: KCNIP3
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
KCNJ11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.559459e-02	ci left: 8.565131e-01	ci right 8.700745e-01	k: 8634	n:10000
Cons ci ratio: 8.846994e-02	ci left: 1.567914e-01	ci right 1.714049e-01	k: 1640	n:10000
KS ci ratio: 9.530083e-02	ci left: 1.377611e-01	ci right 1.516466e-01	k: 1446	n:10000
KCNJ11   10000 perm   1 sec   (7322 perm/sec)   p_kst 1.446000e-01   p_cons 1.640000e-01   p_joint 8.634000e-01

Outputting figure to mutsig2_images.part000000000088/KCNJ11.2_1177_10000_0.1446_0.164_0.8634.png
                gene_name: KCNJ11
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 94 percent done.
KCNJ15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.161767e-02	ci left: 7.583849e-01	ci right 7.750594e-01	k: 7668	n:10000
KS ci ratio: 3.811184e-02	ci left: 5.041511e-01	ci right 5.238407e-01	k: 5140	n:10000
KCNJ15   10000 perm   1 sec   (7380 perm/sec)   p_kst 5.140000e-01   p_cons 7.668000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000088/KCNJ15.2_1132_10000_0.514_0.7668_1.png
                gene_name: KCNJ15
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
KCNJ16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.443885e-02	ci left: 2.089543e-01	ci right 2.252108e-01	k: 2170	n:10000
Cons ci ratio: 1.348616e-01	ci left: 7.262363e-02	ci right 8.322381e-02	k: 778	n:10000
KS ci ratio: 4.021046e-02	ci left: 4.773583e-01	ci right 4.970491e-01	k: 4872	n:10000
KCNJ16   10000 perm   1 sec   (7274 perm/sec)   p_kst 4.872000e-01   p_cons 7.780000e-02   p_joint 2.170000e-01

Joint ci ratio: 5.255950e-02	ci left: 2.118484e-01	ci right 2.233338e-01	k: 4351	n:20000
Cons ci ratio: 9.644178e-02	ci left: 7.260863e-02	ci right 8.001510e-02	k: 1525	n:20000
KS ci ratio: 2.842392e-02	ci left: 4.804499e-01	ci right 4.943537e-01	k: 9748	n:20000
KCNJ16   20000 perm   3 sec   (6320 perm/sec)   p_kst 4.874000e-01   p_cons 7.625000e-02   p_joint 2.175500e-01

Outputting figure to mutsig2_images.part000000000088/KCNJ16.2_1261_20000_0.4874_0.07625_0.21755.png
                gene_name: KCNJ16
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.076 
      ci_cons_bounds_left: 0.073 
     ci_cons_bounds_right: 0.080 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 97 percent done.
KCNJ5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.270626e-01	ci left: 8.135280e-02	ci right 9.248921e-02	k: 868	n:10000
KS ci ratio: 5.355019e-02	ci left: 3.394541e-01	ci right 3.582340e-01	k: 3488	n:10000
KCNJ5   10000 perm   1 sec   (7315 perm/sec)   p_kst 3.488000e-01   p_cons 8.680000e-02   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 9.027595e-02	ci left: 8.224775e-02	ci right 9.007306e-02	k: 1722	n:20000
KS ci ratio: 3.812962e-02	ci left: 3.391065e-01	ci right 3.523384e-01	k: 6914	n:20000
KCNJ5   20000 perm   3 sec   (6466 perm/sec)   p_kst 3.457000e-01   p_cons 8.610000e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000088/KCNJ5.2_1268_20000_0.3457_0.0861_1.png
                gene_name: KCNJ5
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.086 
      ci_cons_bounds_left: 0.082 
     ci_cons_bounds_right: 0.090 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
KCNK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.415472e-02	ci left: 8.782779e-01	ci right 8.908971e-01	k: 8847	n:10000
KS ci ratio: 2.698187e-02	ci left: 6.692450e-01	ci right 6.876510e-01	k: 6785	n:10000
KCNK1   10000 perm   1 sec   (7913 perm/sec)   p_kst 6.785000e-01   p_cons 8.847000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000088/KCNK1.2_1023_10000_0.6785_0.8847_1.png
                gene_name: KCNK1
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000088
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 88 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1725>
Subject: Job 8004194: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1725>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000089> was used as the working directory.
Started at Sun Nov 11 15:07:07 2012
Results reported at Sun Nov 11 15:15:38 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000089.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000089.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 89  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000089.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    518.41 sec.
    Max Memory :      4681 MB
    Max Swap   :      7107 MB

    Max Processes  :         7
    Max Threads    :        72

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
89
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 89
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 89: processing genes 7962 - 8052
Calculating significance of each gene.
Using projection method.
7962	KCNK10	5.438980e-01
7963	KCNK12	1
7964	KCNK13	5.090374e-01
7965	KCNK15	5.097822e-01
7966	KCNK16	1
7967	KCNK17	1
7968	KCNK18	3.576572e-02
7969	KCNK2	6.319130e-01
7970	KCNK3	5.577518e-01
7971	KCNK4	6.498374e-01
7972	KCNK5	7.932170e-01
7973	KCNK6	1
7974	KCNK7	1
7975	KCNK9	6.213252e-01
7976	KCNMA1	7.400687e-01
7977	KCNMB1	2.514927e-01
7978	KCNMB2	1
7979	KCNMB3	5.438791e-01
7980	KCNMB4	1.472062e-01
7981	KCNN1	1.330038e-01
7982	KCNN2	5.713223e-04
7983	KCNN3	1.135024e-01
7984	KCNN4	2.736420e-01
7985	KCNQ1	3.663324e-01
7986	KCNQ2	1
7987	KCNQ3	8.059720e-02
7988	KCNQ4	5.736651e-01
7989	KCNQ5	2.190767e-01
7990	KCNRG	4.390144e-01
7991	KCNS1	3.268699e-01
7992	KCNS2	2.560887e-01
7993	KCNS3	5.408837e-01
7994	KCNT1	6.725441e-01
7995	KCNT2	5.582881e-01
7996	KCNU1	1
7997	KCNV1	1
7998	KCNV2	5.140642e-01
7999	KCTD1	2.918973e-01
8000/18094 8000	KCTD10	2.053152e-01
8001	KCTD11	1
8002	KCTD12	4.158453e-01
8003	KCTD13	6.182019e-01
8004	KCTD14	1
8005	KCTD15	1
8006	KCTD16	9.472141e-02
8007	KCTD17	1
8008	KCTD18	1
8009	KCTD19	9.898564e-01
8010	KCTD2	1
8011	KCTD20	8.198839e-01
8012	KCTD21	1.498221e-01
8013	KCTD3	1.640487e-01
8014	KCTD4	2.644879e-01
8015	KCTD5	1
8016	KCTD6	3.677046e-01
8017	KCTD7	3.510940e-01
8018	KCTD8	6.761336e-01
8019	KCTD9	2.239663e-01
8020	KDELC1	1
8021	KDELC2	4.711997e-01
8022	KDELR1	1
8023	KDELR2	5.794123e-01
8024	KDELR3	1
8025	KDM1A	6.724368e-01
8026	KDM1B	5.128866e-01
8027	KDM2A	7.189832e-01
8028	KDM2B	9.488299e-01
8029	KDM3A	9.844805e-01
8030	KDM3B	9.971776e-01
8031	KDM4A	5.516130e-01
8032	KDM4B	9.649554e-01
8033	KDM4C	9.717848e-01
8034	KDM4D	1
8035	KDM4DL	1
8036	KDM5A	9.982652e-01
8037	KDM5B	6.204401e-01
8038	KDM5C	6.812656e-01
8039	KDM5D	9.124374e-01
8040	KDM6A	2.223699e-01
8041	KDM6B	9.580267e-01
8042	KDR	4.259975e-01
8043	KDSR	5.101403e-01
8044	KEAP1	2.212452e-12
8045	KEL	3.942592e-01
8046	KERA	1
8047	KHDC1	1.810000e-01
8048	KHDC1L	1
8049	KHDRBS1	3.562301e-01
8050	KHDRBS2	7.137525e-02
8051	KHDRBS3	1.913642e-01
8052	KHK	5.068892e-01
Done

Running MutSig 2:
Scatter job 89: processing genes 7962 - 8052
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
KEAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.370683e-01	ci left: 7.039603e-02	ci right 8.085279e-02	k: 755	n:10000
Cons ci ratio: 7.424233e-02	ci left: 2.098419e-01	ci right 2.261227e-01	k: 2179	n:10000
KS ci ratio: 1.715849e-01	ci left: 4.533038e-02	ci right 5.393440e-02	k: 495	n:10000
KEAP1   10000 perm   2 sec   (4853 perm/sec)   p_kst 4.950000e-02   p_cons 2.179000e-01   p_joint 7.550000e-02

Joint ci ratio: 9.988490e-02	ci left: 6.791774e-02	ci right 7.510743e-02	k: 1429	n:20000
Cons ci ratio: 5.241330e-02	ci left: 2.127893e-01	ci right 2.242927e-01	k: 4370	n:20000
KS ci ratio: 1.134279e-01	ci left: 5.314517e-02	ci right 5.958457e-02	k: 1126	n:20000
KEAP1   20000 perm   6 sec   (3271 perm/sec)   p_kst 5.630000e-02   p_cons 2.185000e-01   p_joint 7.145000e-02

Joint ci ratio: 7.830140e-02	ci left: 7.407315e-02	ci right 8.014238e-02	k: 2312	n:30000
Cons ci ratio: 4.352902e-02	ci left: 2.081468e-01	ci right 2.174422e-01	k: 6383	n:30000
KS ci ratio: 9.131898e-02	ci left: 5.521814e-02	ci right 6.053455e-02	k: 1735	n:30000
KEAP1   30000 perm   9 sec   (3519 perm/sec)   p_kst 5.783333e-02   p_cons 2.127667e-01   p_joint 7.706667e-02

Outputting figure to mutsig2_images.part000000000089/KEAP1.23_1895_30000_0.057833_0.21277_0.077067.png
                gene_name: KEAP1
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.058 
        ci_ks_bounds_left: 0.055 
       ci_ks_bounds_right: 0.061 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.077 
     ci_joint_bounds_left: 0.074 
    ci_joint_bounds_right: 0.080 

Current progress: 2 percent done.
KDR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.771470e-02	ci left: 2.424265e-01	ci right 2.595188e-01	k: 2509	n:10000
Cons ci ratio: 2.278258e-02	ci left: 7.388637e-01	ci right 7.559919e-01	k: 7475	n:10000
KS ci ratio: 1.065542e-01	ci left: 1.128131e-01	ci right 1.256096e-01	k: 1191	n:10000
KDR   10000 perm   2 sec   (4606 perm/sec)   p_kst 1.191000e-01   p_cons 7.475000e-01   p_joint 2.509000e-01

Joint ci ratio: 5.395651e-02	ci left: 2.031351e-01	ci right 2.144497e-01	k: 4175	n:20000
Cons ci ratio: 1.606720e-02	ci left: 7.424261e-01	ci right 7.545016e-01	k: 14970	n:20000
KS ci ratio: 7.618347e-02	ci left: 1.124288e-01	ci right 1.213829e-01	k: 2337	n:20000
KDR   20000 perm   5 sec   (4182 perm/sec)   p_kst 1.168500e-01   p_cons 7.485000e-01   p_joint 2.087500e-01

Outputting figure to mutsig2_images.part000000000089/KDR.15_4191_20000_0.11685_0.7485_0.20875.png
                gene_name: KDR
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 3 percent done.
KCNT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.598207e-02	ci left: 3.196927e-01	ci right 3.382070e-01	k: 3289	n:10000
Cons ci ratio: 3.590659e-02	ci left: 5.338761e-01	ci right 5.534984e-01	k: 5437	n:10000
KS ci ratio: 8.597494e-02	ci left: 1.646498e-01	ci right 1.795417e-01	k: 1720	n:10000
KCNT2   10000 perm   2 sec   (4630 perm/sec)   p_kst 1.720000e-01   p_cons 5.437000e-01   p_joint 3.289000e-01

Outputting figure to mutsig2_images.part000000000089/KCNT2.12_3520_10000_0.172_0.5437_0.3289.png
                gene_name: KCNT2
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 5 percent done.
KDM5B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.244088e-02	ci left: 2.737893e-01	ci right 2.915374e-01	k: 2826	n:10000
Cons ci ratio: 6.202778e-02	ci left: 2.764632e-01	ci right 2.942620e-01	k: 2853	n:10000
KS ci ratio: 6.987054e-02	ci left: 2.309646e-01	ci right 2.477875e-01	k: 2393	n:10000
KDM5B   10000 perm   2 sec   (5354 perm/sec)   p_kst 2.393000e-01   p_cons 2.853000e-01   p_joint 2.826000e-01

Outputting figure to mutsig2_images.part000000000089/KDM5B.12_4743_10000_0.2393_0.2853_0.2826.png
                gene_name: KDM5B
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 7 percent done.
KCNN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.221246e-01	ci left: 8.766844e-02	ci right 9.916968e-02	k: 933	n:10000
Cons ci ratio: 2.784546e-02	ci left: 6.552495e-01	ci right 6.738545e-01	k: 6646	n:10000
KS ci ratio: 1.943197e-01	ci left: 3.529041e-02	ci right 4.298104e-02	k: 390	n:10000
KCNN2   10000 perm   2 sec   (5945 perm/sec)   p_kst 3.900000e-02   p_cons 6.646000e-01   p_joint 9.330000e-02

Joint ci ratio: 9.016148e-02	ci left: 8.244363e-02	ci right 9.027712e-02	k: 1726	n:20000
Cons ci ratio: 1.969046e-02	ci left: 6.580082e-01	ci right 6.711440e-01	k: 13292	n:20000
KS ci ratio: 1.341389e-01	ci left: 3.819702e-02	ci right 4.373744e-02	k: 818	n:20000
KCNN2   20000 perm   4 sec   (5344 perm/sec)   p_kst 4.090000e-02   p_cons 6.646000e-01   p_joint 8.630000e-02

Joint ci ratio: 7.741637e-02	ci left: 7.567721e-02	ci right 8.180466e-02	k: 2361	n:30000
Cons ci ratio: 1.639099e-02	ci left: 6.505260e-01	ci right 6.613104e-01	k: 19678	n:30000
KS ci ratio: 1.084026e-01	ci left: 3.949821e-02	ci right 4.405774e-02	k: 1252	n:30000
KCNN2   30000 perm   6 sec   (5104 perm/sec)   p_kst 4.173333e-02   p_cons 6.559333e-01   p_joint 7.870000e-02

Joint ci ratio: 7.379134e-02	ci left: 6.346310e-02	ci right 6.835015e-02	k: 2635	n:40000
Cons ci ratio: 1.430402e-02	ci left: 6.477850e-01	ci right 6.571428e-01	k: 26099	n:40000
KS ci ratio: 9.437205e-02	ci left: 3.939530e-02	ci right 4.332164e-02	k: 1653	n:40000
KCNN2   40000 perm   8 sec   (4950 perm/sec)   p_kst 4.132500e-02   p_cons 6.524750e-01   p_joint 6.587500e-02

Outputting figure to mutsig2_images.part000000000089/KCNN2.11_1772_40000_0.041325_0.65248_0.065875.png
                gene_name: KCNN2
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.041 
        ci_ks_bounds_left: 0.039 
       ci_ks_bounds_right: 0.043 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.066 
     ci_joint_bounds_left: 0.063 
    ci_joint_bounds_right: 0.068 

Current progress: 8 percent done.
KCNQ3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.463924e-01	ci left: 6.198316e-02	ci right 7.187095e-02	k: 668	n:10000
Cons ci ratio: 2.634707e-02	ci left: 6.796217e-01	ci right 6.978683e-01	k: 6888	n:10000
KS ci ratio: 3.054647e-01	ci left: 1.372489e-02	ci right 1.876262e-02	k: 161	n:10000
KCNQ3   10000 perm   2 sec   (5482 perm/sec)   p_kst 1.610000e-02   p_cons 6.888000e-01   p_joint 6.680000e-02

Joint ci ratio: 1.157874e-01	ci left: 5.105351e-02	ci right 5.737688e-02	k: 1083	n:20000
Cons ci ratio: 1.870903e-02	ci left: 6.805215e-01	ci right 6.934241e-01	k: 13740	n:20000
KS ci ratio: 2.076863e-01	ci left: 1.568069e-02	ci right 1.936149e-02	k: 349	n:20000
KCNQ3   20000 perm   4 sec   (4967 perm/sec)   p_kst 1.745000e-02   p_cons 6.870000e-01   p_joint 5.415000e-02

Joint ci ratio: 1.049942e-01	ci left: 4.206419e-02	ci right 4.675789e-02	k: 1331	n:30000
Cons ci ratio: 1.523933e-02	ci left: 6.827560e-01	ci right 6.932742e-01	k: 20641	n:30000
KS ci ratio: 1.707387e-01	ci left: 1.579092e-02	ci right 1.877029e-02	k: 517	n:30000
KCNQ3   30000 perm   6 sec   (4754 perm/sec)   p_kst 1.723333e-02   p_cons 6.880333e-01   p_joint 4.436667e-02

Joint ci ratio: 9.386996e-02	ci left: 3.981070e-02	ci right 4.375618e-02	k: 1670	n:40000
Cons ci ratio: 1.319874e-02	ci left: 6.834336e-01	ci right 6.925391e-01	k: 27520	n:40000
KS ci ratio: 1.502814e-01	ci left: 1.546688e-02	ci right 1.800398e-02	k: 668	n:40000
KCNQ3   40000 perm   9 sec   (4602 perm/sec)   p_kst 1.670000e-02   p_cons 6.880000e-01   p_joint 4.175000e-02

Joint ci ratio: 8.448374e-02	ci left: 3.953335e-02	ci right 4.304016e-02	k: 2063	n:50000
Cons ci ratio: 1.189066e-02	ci left: 6.808074e-01	ci right 6.889711e-01	k: 34245	n:50000
KS ci ratio: 1.327508e-01	ci left: 1.600109e-02	ci right 1.829546e-02	k: 856	n:50000
KCNQ3   50000 perm   11 sec   (4504 perm/sec)   p_kst 1.712000e-02   p_cons 6.849000e-01   p_joint 4.126000e-02

Joint ci ratio: 8.363915e-02	ci left: 3.383760e-02	ci right 3.680756e-02	k: 2118	n:60000
Cons ci ratio: 1.086682e-02	ci left: 6.806808e-01	ci right 6.881347e-01	k: 41065	n:60000
KS ci ratio: 1.196779e-01	ci left: 1.651438e-02	ci right 1.863265e-02	k: 1053	n:60000
KCNQ3   60000 perm   14 sec   (4412 perm/sec)   p_kst 1.755000e-02   p_cons 6.844167e-01   p_joint 3.530000e-02

Joint ci ratio: 6.919097e-02	ci left: 4.232385e-02	ci right 4.537125e-02	k: 3068	n:70000
Cons ci ratio: 1.008609e-02	ci left: 6.798679e-01	ci right 6.867741e-01	k: 47833	n:70000
KS ci ratio: 1.103294e-01	ci left: 1.673608e-02	ci right 1.870419e-02	k: 1239	n:70000
KCNQ3   70000 perm   16 sec   (4311 perm/sec)   p_kst 1.770000e-02   p_cons 6.833286e-01   p_joint 4.382857e-02

Joint ci ratio: 6.709197e-02	ci left: 3.955027e-02	ci right 4.230815e-02	k: 3273	n:80000
Cons ci ratio: 9.428491e-03	ci left: 6.803770e-01	ci right 6.868347e-01	k: 54689	n:80000
KS ci ratio: 1.030242e-01	ci left: 1.685847e-02	ci right 1.870174e-02	k: 1421	n:80000
KCNQ3   80000 perm   19 sec   (4226 perm/sec)   p_kst 1.776250e-02   p_cons 6.836125e-01   p_joint 4.091250e-02

Joint ci ratio: 6.643392e-02	ci left: 3.600576e-02	ci right 3.849085e-02	k: 3351	n:90000
Cons ci ratio: 8.887477e-03	ci left: 6.806504e-01	ci right 6.867377e-01	k: 61533	n:90000
KS ci ratio: 9.746612e-02	ci left: 1.679433e-02	ci right 1.852585e-02	k: 1588	n:90000
KCNQ3   90000 perm   22 sec   (4147 perm/sec)   p_kst 1.764444e-02   p_cons 6.837000e-01   p_joint 3.723333e-02

Outputting figure to mutsig2_images.part000000000089/KCNQ3.10_2679_90000_0.017644_0.6837_0.037233.png
                gene_name: KCNQ3
               theta_stop: 0.097 
                    nperm: 90000 
                     p_ks: 0.018 
        ci_ks_bounds_left: 0.017 
       ci_ks_bounds_right: 0.019 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.037 
     ci_joint_bounds_left: 0.036 
    ci_joint_bounds_right: 0.038 

Current progress: 10 percent done.
KCNK10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.110596e-02	ci left: 4.663694e-01	ci right 4.860444e-01	k: 4762	n:10000
Cons ci ratio: 3.743116e-02	ci left: 5.131551e-01	ci right 5.328315e-01	k: 5230	n:10000
KS ci ratio: 6.058452e-02	ci left: 2.860725e-01	ci right 3.040471e-01	k: 2950	n:10000
KCNK10   10000 perm   2 sec   (5964 perm/sec)   p_kst 2.950000e-01   p_cons 5.230000e-01   p_joint 4.762000e-01

Outputting figure to mutsig2_images.part000000000089/KCNK10.8_1757_10000_0.295_0.523_0.4762.png
                gene_name: KCNK10
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 12 percent done.
KCTD8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.682955e-02	ci left: 3.131428e-01	ci right 3.315608e-01	k: 3223	n:10000
KS ci ratio: 1.724980e-02	ci left: 8.304267e-01	ci right 8.449760e-01	k: 8378	n:10000
KCTD8   10000 perm   2 sec   (6597 perm/sec)   p_kst 8.378000e-01   p_cons 3.223000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000089/KCTD8.7_1430_10000_0.8378_0.3223_1.png
                gene_name: KCTD8
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 14 percent done.
KDM5A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.310842e-02	ci left: 7.334059e-01	ci right 7.506529e-01	k: 7421	n:10000
Cons ci ratio: 3.396687e-02	ci left: 5.613302e-01	ci right 5.808283e-01	k: 5711	n:10000
KS ci ratio: 3.830297e-02	ci left: 5.016506e-01	ci right 5.213427e-01	k: 5115	n:10000
KDM5A   10000 perm   2 sec   (5038 perm/sec)   p_kst 5.115000e-01   p_cons 5.711000e-01   p_joint 7.421000e-01

Outputting figure to mutsig2_images.part000000000089/KDM5A.7_5185_10000_0.5115_0.5711_0.7421.png
                gene_name: KDM5A
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 15 percent done.
KDM6A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.013812e-02	ci left: 4.782576e-01	ci right 4.979493e-01	k: 4881	n:10000
Cons ci ratio: 5.476226e-02	ci left: 3.294222e-01	ci right 3.480718e-01	k: 3387	n:10000
KS ci ratio: 4.048500e-02	ci left: 4.739612e-01	ci right 4.936482e-01	k: 4838	n:10000
KDM6A   10000 perm   2 sec   (5055 perm/sec)   p_kst 4.838000e-01   p_cons 3.387000e-01   p_joint 4.881000e-01

Outputting figure to mutsig2_images.part000000000089/KDM6A.7_4322_10000_0.4838_0.3387_0.4881.png
                gene_name: KDM6A
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 17 percent done.
KCNQ5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.403689e-02	ci left: 4.322344e-01	ci right 4.517994e-01	k: 4420	n:10000
Cons ci ratio: 6.065741e-02	ci left: 2.855770e-01	ci right 3.035428e-01	k: 2945	n:10000
KS ci ratio: 6.301540e-02	ci left: 2.701258e-01	ci right 2.878031e-01	k: 2789	n:10000
KCNQ5   10000 perm   2 sec   (5947 perm/sec)   p_kst 2.789000e-01   p_cons 2.945000e-01   p_joint 4.420000e-01

Outputting figure to mutsig2_images.part000000000089/KCNQ5.6_2916_10000_0.2789_0.2945_0.442.png
                gene_name: KCNQ5
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 19 percent done.
KDM6B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.045236e-01	ci left: 1.168187e-01	ci right 1.298017e-01	k: 1232	n:10000
Cons ci ratio: 3.092731e-02	ci left: 6.066862e-01	ci right 6.258460e-01	k: 6163	n:10000
KS ci ratio: 1.269826e-01	ci left: 8.144990e-02	ci right 9.259206e-02	k: 869	n:10000
KDM6B   10000 perm   2 sec   (5283 perm/sec)   p_kst 8.690000e-02   p_cons 6.163000e-01   p_joint 1.232000e-01

Joint ci ratio: 7.852226e-02	ci left: 1.064325e-01	ci right 1.151810e-01	k: 2215	n:20000
Cons ci ratio: 2.257202e-02	ci left: 5.944247e-01	ci right 6.080458e-01	k: 12025	n:20000
KS ci ratio: 9.141269e-02	ci left: 8.033820e-02	ci right 8.808318e-02	k: 1683	n:20000
KDM6B   20000 perm   4 sec   (4761 perm/sec)   p_kst 8.415000e-02   p_cons 6.012500e-01   p_joint 1.107500e-01

Outputting figure to mutsig2_images.part000000000089/KDM6B.6_5125_20000_0.08415_0.60125_0.11075.png
                gene_name: KDM6B
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.084 
        ci_ks_bounds_left: 0.080 
       ci_ks_bounds_right: 0.088 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 20 percent done.
KCNK9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.135306e-01	ci left: 2.911124e-02	ci right 3.616447e-02	k: 325	n:10000
Cons ci ratio: 1.787134e-01	ci left: 4.178548e-02	ci right 5.008162e-02	k: 458	n:10000
KS ci ratio: 1.663568e-01	ci left: 4.820949e-02	ci right 5.705342e-02	k: 525	n:10000
KCNK9   10000 perm   2 sec   (6325 perm/sec)   p_kst 5.250000e-02   p_cons 4.580000e-02   p_joint 3.250000e-02

Joint ci ratio: 1.219798e-01	ci left: 4.609757e-02	ci right 5.213438e-02	k: 981	n:20000
Cons ci ratio: 1.269532e-01	ci left: 4.260458e-02	ci right 4.842848e-02	k: 909	n:20000
KS ci ratio: 1.210110e-01	ci left: 4.682585e-02	ci right 5.290587e-02	k: 996	n:20000
KCNK9   20000 perm   4 sec   (5710 perm/sec)   p_kst 4.980000e-02   p_cons 4.545000e-02   p_joint 4.905000e-02

Joint ci ratio: 1.148169e-01	ci left: 3.524875e-02	ci right 3.957476e-02	k: 1121	n:30000
Cons ci ratio: 1.038171e-01	ci left: 4.300671e-02	ci right 4.774851e-02	k: 1360	n:30000
KS ci ratio: 9.820257e-02	ci left: 4.795141e-02	ci right 5.293611e-02	k: 1512	n:30000
KCNK9   30000 perm   5 sec   (5464 perm/sec)   p_kst 5.040000e-02   p_cons 4.533333e-02   p_joint 3.736667e-02

Joint ci ratio: 1.021990e-01	ci left: 3.365916e-02	ci right 3.730868e-02	k: 1418	n:40000
Cons ci ratio: 9.047581e-02	ci left: 4.279337e-02	ci right 4.687304e-02	k: 1792	n:40000
KS ci ratio: 8.498710e-02	ci left: 4.834979e-02	ci right 5.266576e-02	k: 2019	n:40000
KCNK9   40000 perm   8 sec   (5306 perm/sec)   p_kst 5.047500e-02   p_cons 4.480000e-02   p_joint 3.545000e-02

Joint ci ratio: 1.011169e-01	ci left: 2.770259e-02	ci right 3.067240e-02	k: 1458	n:50000
Cons ci ratio: 7.850238e-02	ci left: 4.563227e-02	ci right 4.938048e-02	k: 2374	n:50000
KS ci ratio: 7.523367e-02	ci left: 4.955919e-02	ci right 5.345309e-02	k: 2574	n:50000
KCNK9   50000 perm   10 sec   (5179 perm/sec)   p_kst 5.148000e-02   p_cons 4.748000e-02   p_joint 2.916000e-02

Joint ci ratio: 7.033830e-02	ci left: 4.748289e-02	ci right 5.096087e-02	k: 2952	n:60000
Cons ci ratio: 7.151787e-02	ci left: 4.597544e-02	ci right 4.940181e-02	k: 2860	n:60000
KS ci ratio: 6.662376e-02	ci left: 5.272970e-02	ci right 5.638021e-02	k: 3272	n:60000
KCNK9   60000 perm   12 sec   (5077 perm/sec)   p_kst 5.453333e-02   p_cons 4.766667e-02   p_joint 4.920000e-02

Outputting figure to mutsig2_images.part000000000089/KCNK9.5_1133_60000_0.054533_0.047667_0.0492.png
                gene_name: KCNK9
               theta_stop: 0.072 
                    nperm: 60000 
                     p_ks: 0.055 
        ci_ks_bounds_left: 0.053 
       ci_ks_bounds_right: 0.056 
                   p_cons: 0.048 
      ci_cons_bounds_left: 0.046 
     ci_cons_bounds_right: 0.049 
                  p_joint: 0.049 
     ci_joint_bounds_left: 0.047 
    ci_joint_bounds_right: 0.051 

Current progress: 22 percent done.
KCNN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.555350e-02	ci left: 5.387836e-01	ci right 5.583881e-01	k: 5486	n:10000
Cons ci ratio: 7.906570e-02	ci left: 1.894406e-01	ci right 2.051361e-01	k: 1972	n:10000
KS ci ratio: 2.956342e-02	ci left: 6.278885e-01	ci right 6.468314e-01	k: 6374	n:10000
KCNN3   10000 perm   2 sec   (6342 perm/sec)   p_kst 6.374000e-01   p_cons 1.972000e-01   p_joint 5.486000e-01

Outputting figure to mutsig2_images.part000000000089/KCNN3.5_2250_10000_0.6374_0.1972_0.5486.png
                gene_name: KCNN3
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 24 percent done.
KCNV1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.283610e-01	ci left: 7.979957e-02	ci right 9.084340e-02	k: 852	n:10000
Cons ci ratio: 9.287501e-02	ci left: 1.441328e-01	ci right 1.582710e-01	k: 1511	n:10000
KS ci ratio: 1.028651e-01	ci left: 1.202398e-01	ci right 1.333784e-01	k: 1267	n:10000
KCNV1   10000 perm   2 sec   (6649 perm/sec)   p_kst 1.267000e-01   p_cons 1.511000e-01   p_joint 8.520000e-02

Joint ci ratio: 8.965107e-02	ci left: 8.332519e-02	ci right 9.119529e-02	k: 1744	n:20000
Cons ci ratio: 6.617712e-02	ci left: 1.442885e-01	ci right 1.542137e-01	k: 2984	n:20000
KS ci ratio: 7.283658e-02	ci left: 1.218734e-01	ci right 1.311355e-01	k: 2529	n:20000
KCNV1   20000 perm   3 sec   (5963 perm/sec)   p_kst 1.264500e-01   p_cons 1.492000e-01   p_joint 8.720000e-02

Outputting figure to mutsig2_images.part000000000089/KCNV1.5_1515_20000_0.12645_0.1492_0.0872.png
                gene_name: KCNV1
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.087 
     ci_joint_bounds_left: 0.083 
    ci_joint_bounds_right: 0.091 

Current progress: 25 percent done.
KCTD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.062302e-02	ci left: 4.722629e-01	ci right 4.919476e-01	k: 4821	n:10000
Cons ci ratio: 7.231530e-02	ci left: 2.188203e-01	ci right 2.353390e-01	k: 2270	n:10000
KS ci ratio: 3.942206e-02	ci left: 4.872524e-01	ci right 5.069493e-01	k: 4971	n:10000
KCTD3   10000 perm   2 sec   (6037 perm/sec)   p_kst 4.971000e-01   p_cons 2.270000e-01   p_joint 4.821000e-01

Outputting figure to mutsig2_images.part000000000089/KCTD3.5_2520_10000_0.4971_0.227_0.4821.png
                gene_name: KCTD3
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 27 percent done.
KDM2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.747717e-02	ci left: 1.323733e-01	ci right 1.460376e-01	k: 1391	n:10000
Cons ci ratio: 2.288572e-01	ci left: 2.523219e-02	ci right 3.184628e-02	k: 284	n:10000
KS ci ratio: 7.746257e-03	ci left: 9.585892e-01	ci right 9.661384e-01	k: 9625	n:10000
KDM2B   10000 perm   2 sec   (5817 perm/sec)   p_kst 9.625000e-01   p_cons 2.840000e-02   p_joint 1.391000e-01

Joint ci ratio: 8.383109e-02	ci left: 9.440373e-02	ci right 1.027134e-01	k: 1970	n:20000
Cons ci ratio: 1.732762e-01	ci left: 2.278476e-02	ci right 2.715484e-02	k: 498	n:20000
KS ci ratio: 5.568329e-03	ci left: 9.584823e-01	ci right 9.638825e-01	k: 19225	n:20000
KDM2B   20000 perm   4 sec   (5303 perm/sec)   p_kst 9.612500e-01   p_cons 2.490000e-02   p_joint 9.850000e-02

Joint ci ratio: 6.411355e-02	ci left: 1.072364e-01	ci right 1.143725e-01	k: 3323	n:30000
Cons ci ratio: 1.391621e-01	ci left: 2.397097e-02	ci right 2.758833e-02	k: 772	n:30000
KS ci ratio: 4.532472e-03	ci left: 9.592268e-01	ci right 9.636166e-01	k: 28844	n:30000
KDM2B   30000 perm   6 sec   (5093 perm/sec)   p_kst 9.614667e-01   p_cons 2.573333e-02   p_joint 1.107667e-01

Joint ci ratio: 5.551710e-02	ci left: 1.077398e-01	ci right 1.139168e-01	k: 4432	n:40000
Cons ci ratio: 1.202591e-01	ci left: 2.431688e-02	ci right 2.745246e-02	k: 1034	n:40000
KS ci ratio: 3.941611e-03	ci left: 9.592100e-01	ci right 9.630227e-01	k: 38446	n:40000
KDM2B   40000 perm   8 sec   (4949 perm/sec)   p_kst 9.611500e-01   p_cons 2.585000e-02   p_joint 1.108000e-01

Joint ci ratio: 5.279157e-02	ci left: 9.669195e-02	ci right 1.019547e-01	k: 4965	n:50000
Cons ci ratio: 1.108040e-01	ci left: 2.306530e-02	ci right 2.579030e-02	k: 1220	n:50000
KS ci ratio: 3.566141e-03	ci left: 9.585312e-01	ci right 9.619751e-01	k: 48014	n:50000
KDM2B   50000 perm   10 sec   (4828 perm/sec)   p_kst 9.602800e-01   p_cons 2.440000e-02   p_joint 9.930000e-02

Joint ci ratio: 4.947510e-02	ci left: 9.236846e-02	ci right 9.707082e-02	k: 5682	n:60000
Cons ci ratio: 1.013344e-01	ci left: 2.309890e-02	ci right 2.558073e-02	k: 1459	n:60000
KS ci ratio: 3.283504e-03	ci left: 9.580108e-01	ci right 9.611779e-01	k: 57577	n:60000
KDM2B   60000 perm   13 sec   (4725 perm/sec)   p_kst 9.596167e-01   p_cons 2.431667e-02   p_joint 9.470000e-02

Joint ci ratio: 4.632858e-02	ci left: 9.063206e-02	ci right 9.494462e-02	k: 6494	n:70000
Cons ci ratio: 9.448294e-02	ci left: 2.286488e-02	ci right 2.514624e-02	k: 1679	n:70000
KS ci ratio: 3.060061e-03	ci left: 9.576065e-01	ci right 9.605553e-01	k: 67137	n:70000
KDM2B   70000 perm   15 sec   (4638 perm/sec)   p_kst 9.591000e-01   p_cons 2.398571e-02   p_joint 9.277143e-02

Outputting figure to mutsig2_images.part000000000089/KDM2B.5_4192_70000_0.9591_0.023986_0.092771.png
                gene_name: KDM2B
               theta_stop: 0.094 
                    nperm: 70000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.024 
      ci_cons_bounds_left: 0.023 
     ci_cons_bounds_right: 0.025 
                  p_joint: 0.093 
     ci_joint_bounds_left: 0.091 
    ci_joint_bounds_right: 0.095 

Current progress: 29 percent done.
KDM5C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.168825e-01	ci left: 9.516088e-02	ci right 1.070726e-01	k: 1010	n:10000
Cons ci ratio: 1.888568e-01	ci left: 3.738868e-02	ci right 4.528136e-02	k: 412	n:10000
KS ci ratio: 1.295265e-01	ci left: 7.844097e-02	ci right 8.940285e-02	k: 838	n:10000
KDM5C   10000 perm   2 sec   (5382 perm/sec)   p_kst 8.380000e-02   p_cons 4.120000e-02   p_joint 1.010000e-01

Joint ci ratio: 1.045681e-01	ci left: 6.220709e-02	ci right 6.911984e-02	k: 1312	n:20000
Cons ci ratio: 1.310813e-01	ci left: 3.998807e-02	ci right 4.564582e-02	k: 855	n:20000
KS ci ratio: 9.024730e-02	ci left: 8.229672e-02	ci right 9.012407e-02	k: 1723	n:20000
KDM5C   20000 perm   4 sec   (4926 perm/sec)   p_kst 8.615000e-02   p_cons 4.275000e-02   p_joint 6.560000e-02

Joint ci ratio: 9.354131e-02	ci left: 5.270749e-02	ci right 5.791238e-02	k: 1658	n:30000
Cons ci ratio: 1.061248e-01	ci left: 4.118695e-02	ci right 4.583531e-02	k: 1304	n:30000
KS ci ratio: 7.417469e-02	ci left: 8.199892e-02	ci right 8.834835e-02	k: 2554	n:30000
KDM5C   30000 perm   6 sec   (4739 perm/sec)   p_kst 8.513333e-02   p_cons 4.346667e-02   p_joint 5.526667e-02

Joint ci ratio: 6.694484e-02	ci left: 7.630089e-02	ci right 8.161043e-02	k: 3157	n:40000
Cons ci ratio: 9.326006e-02	ci left: 4.032391e-02	ci right 4.429288e-02	k: 1691	n:40000
KS ci ratio: 6.451378e-02	ci left: 8.176741e-02	ci right 8.724308e-02	k: 3379	n:40000
KDM5C   40000 perm   9 sec   (4613 perm/sec)   p_kst 8.447500e-02   p_cons 4.227500e-02   p_joint 7.892500e-02

Outputting figure to mutsig2_images.part000000000089/KDM5C.5_4885_40000_0.084475_0.042275_0.078925.png
                gene_name: KDM5C
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.084 
        ci_ks_bounds_left: 0.082 
       ci_ks_bounds_right: 0.087 
                   p_cons: 0.042 
      ci_cons_bounds_left: 0.040 
     ci_cons_bounds_right: 0.044 
                  p_joint: 0.079 
     ci_joint_bounds_left: 0.076 
    ci_joint_bounds_right: 0.082 

Current progress: 31 percent done.
KHDRBS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.448267e-02	ci left: 2.087570e-01	ci right 2.250082e-01	k: 2168	n:10000
Cons ci ratio: 5.896462e-02	ci left: 2.973720e-01	ci right 3.155408e-01	k: 3064	n:10000
KS ci ratio: 1.175954e-01	ci left: 9.408985e-02	ci right 1.059443e-01	k: 999	n:10000
KHDRBS2   10000 perm   1 sec   (6741 perm/sec)   p_kst 9.990000e-02   p_cons 3.064000e-01   p_joint 2.168000e-01

Joint ci ratio: 5.807201e-02	ci left: 1.801340e-01	ci right 1.909576e-01	k: 3710	n:20000
Cons ci ratio: 4.085156e-02	ci left: 3.087634e-01	ci right 3.216904e-01	k: 6304	n:20000
KS ci ratio: 8.287816e-02	ci left: 9.641542e-02	ci right 1.048011e-01	k: 2011	n:20000
KHDRBS2   20000 perm   3 sec   (6083 perm/sec)   p_kst 1.005500e-01   p_cons 3.152000e-01   p_joint 1.855000e-01

Outputting figure to mutsig2_images.part000000000089/KHDRBS2.5_1086_20000_0.10055_0.3152_0.1855.png
                gene_name: KHDRBS2
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.096 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 32 percent done.
KCNK18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.170467e-02	ci left: 3.554552e-01	ci right 3.744236e-01	k: 3649	n:10000
Cons ci ratio: 9.518550e-02	ci left: 1.380551e-01	ci right 1.519524e-01	k: 1449	n:10000
KS ci ratio: 1.202125e-02	ci left: 9.084365e-01	ci right 9.195210e-01	k: 9141	n:10000
KCNK18   10000 perm   2 sec   (6620 perm/sec)   p_kst 9.141000e-01   p_cons 1.449000e-01   p_joint 3.649000e-01

Outputting figure to mutsig2_images.part000000000089/KCNK18.4_1166_10000_0.9141_0.1449_0.3649.png
                gene_name: KCNK18
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 34 percent done.
KCNMA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.243091e-02	ci left: 4.505937e-01	ci right 4.702294e-01	k: 4604	n:10000
Cons ci ratio: 1.282976e-02	ci left: 8.973393e-01	ci right 9.090246e-01	k: 9033	n:10000
KS ci ratio: 5.233511e-02	ci left: 3.498883e-01	ci right 3.687937e-01	k: 3593	n:10000
KCNMA1   10000 perm   2 sec   (5733 perm/sec)   p_kst 3.593000e-01   p_cons 9.033000e-01   p_joint 4.604000e-01

Outputting figure to mutsig2_images.part000000000089/KCNMA1.4_3995_10000_0.3593_0.9033_0.4604.png
                gene_name: KCNMA1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 36 percent done.
KCNQ2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.735752e-02	ci left: 8.286969e-01	ci right 8.433068e-01	k: 8361	n:10000
KS ci ratio: 2.477206e-02	ci left: 7.056371e-01	ci right 7.234378e-01	k: 7146	n:10000
KCNQ2   10000 perm   2 sec   (6417 perm/sec)   p_kst 7.146000e-01   p_cons 8.361000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000089/KCNQ2.4_2751_10000_0.7146_0.8361_1.png
                gene_name: KCNQ2
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 37 percent done.
KCNT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.326865e-02	ci left: 4.409135e-01	ci right 4.605152e-01	k: 4507	n:10000
Cons ci ratio: 9.817468e-02	ci left: 1.307088e-01	ci right 1.443032e-01	k: 1374	n:10000
KS ci ratio: 2.667938e-02	ci left: 6.741808e-01	ci right 6.925123e-01	k: 6834	n:10000
KCNT1   10000 perm   2 sec   (5757 perm/sec)   p_kst 6.834000e-01   p_cons 1.374000e-01   p_joint 4.507000e-01

Outputting figure to mutsig2_images.part000000000089/KCNT1.4_3832_10000_0.6834_0.1374_0.4507.png
                gene_name: KCNT1
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 39 percent done.
KCNU1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.691387e-02	ci left: 2.468751e-01	ci right 2.640676e-01	k: 2554	n:10000
Cons ci ratio: 4.135393e-02	ci left: 4.633733e-01	ci right 4.830423e-01	k: 4732	n:10000
KS ci ratio: 1.054030e-01	ci left: 1.150598e-01	ci right 1.279615e-01	k: 1214	n:10000
KCNU1   10000 perm   2 sec   (5774 perm/sec)   p_kst 1.214000e-01   p_cons 4.732000e-01   p_joint 2.554000e-01

Joint ci ratio: 5.095377e-02	ci left: 2.224977e-01	ci right 2.341814e-01	k: 4566	n:20000
Cons ci ratio: 2.892916e-02	ci left: 4.716554e-01	ci right 4.855509e-01	k: 9572	n:20000
KS ci ratio: 7.609137e-02	ci left: 1.126747e-01	ci right 1.216370e-01	k: 2342	n:20000
KCNU1   20000 perm   4 sec   (5253 perm/sec)   p_kst 1.171000e-01   p_cons 4.786000e-01   p_joint 2.283000e-01

Outputting figure to mutsig2_images.part000000000089/KCNU1.4_3558_20000_0.1171_0.4786_0.2283.png
                gene_name: KCNU1
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 41 percent done.
KCTD16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.181024e-02	ci left: 5.932311e-01	ci right 6.125089e-01	k: 6029	n:10000
Cons ci ratio: 3.839503e-02	ci left: 5.004505e-01	ci right 5.201435e-01	k: 5103	n:10000
KS ci ratio: 3.901428e-02	ci left: 4.924508e-01	ci right 5.121478e-01	k: 5023	n:10000
KCTD16   10000 perm   1 sec   (6796 perm/sec)   p_kst 5.023000e-01   p_cons 5.103000e-01   p_joint 6.029000e-01

Outputting figure to mutsig2_images.part000000000089/KCTD16.4_1295_10000_0.5023_0.5103_0.6029.png
                gene_name: KCTD16
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 42 percent done.
KCTD9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.654068e-02	ci left: 5.251652e-01	ci right 5.448144e-01	k: 5350	n:10000
Cons ci ratio: 1.051876e-02	ci left: 9.278190e-01	ci right 9.377271e-01	k: 9329	n:10000
KS ci ratio: 5.428899e-02	ci left: 3.332954e-01	ci right 3.519964e-01	k: 3426	n:10000
KCTD9   10000 perm   1 sec   (6946 perm/sec)   p_kst 3.426000e-01   p_cons 9.329000e-01   p_joint 5.350000e-01

Outputting figure to mutsig2_images.part000000000089/KCTD9.4_1218_10000_0.3426_0.9329_0.535.png
                gene_name: KCTD9
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.54 

Current progress: 44 percent done.
KDM2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.414745e-02	ci left: 5.587238e-01	ci right 5.782363e-01	k: 5685	n:10000
Cons ci ratio: 8.461249e-02	ci left: 1.691711e-01	ci right 1.842178e-01	k: 1766	n:10000
KS ci ratio: 2.350084e-02	ci left: 7.268385e-01	ci right 7.442241e-01	k: 7356	n:10000
KDM2A   10000 perm   2 sec   (5846 perm/sec)   p_kst 7.356000e-01   p_cons 1.766000e-01   p_joint 5.685000e-01

Outputting figure to mutsig2_images.part000000000089/KDM2A.4_3569_10000_0.7356_0.1766_0.5685.png
                gene_name: KDM2A
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 46 percent done.
KDM3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.425669e-02	ci left: 7.142157e-01	ci right 7.318542e-01	k: 7231	n:10000
KS ci ratio: 1.755337e-02	ci left: 8.255431e-01	ci right 8.402624e-01	k: 8330	n:10000
KDM3B   10000 perm   2 sec   (5146 perm/sec)   p_kst 8.330000e-01   p_cons 7.231000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000089/KDM3B.4_5382_10000_0.833_0.7231_1.png
                gene_name: KDM3B
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 47 percent done.
KDM4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.237110e-02	ci left: 5.848004e-01	ci right 6.041445e-01	k: 5945	n:10000
Cons ci ratio: 5.731428e-02	ci left: 3.094718e-01	ci right 3.278340e-01	k: 3186	n:10000
KS ci ratio: 2.292739e-02	ci left: 7.364378e-01	ci right 7.536193e-01	k: 7451	n:10000
KDM4A   10000 perm   2 sec   (5706 perm/sec)   p_kst 7.451000e-01   p_cons 3.186000e-01   p_joint 5.945000e-01

Outputting figure to mutsig2_images.part000000000089/KDM4A.4_3279_10000_0.7451_0.3186_0.5945.png
                gene_name: KDM4A
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 49 percent done.
KDM4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.043026e-02	ci left: 7.782343e-01	ci right 7.943986e-01	k: 7864	n:10000
Cons ci ratio: 9.821929e-03	ci left: 9.362019e-01	ci right 9.455392e-01	k: 9410	n:10000
KS ci ratio: 3.846421e-02	ci left: 4.995504e-01	ci right 5.192441e-01	k: 5094	n:10000
KDM4B   10000 perm   2 sec   (5789 perm/sec)   p_kst 5.094000e-01   p_cons 9.410000e-01   p_joint 7.864000e-01

Outputting figure to mutsig2_images.part000000000089/KDM4B.4_3375_10000_0.5094_0.941_0.7864.png
                gene_name: KDM4B
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.79 

Current progress: 51 percent done.
KEL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.546571e-02	ci left: 6.941377e-01	ci right 7.121438e-01	k: 7032	n:10000
Cons ci ratio: 1.829882e-02	ci left: 8.134449e-01	ci right 8.285676e-01	k: 8211	n:10000
KS ci ratio: 3.780034e-02	ci left: 5.082525e-01	ci right 5.279369e-01	k: 5181	n:10000
KEL   10000 perm   1 sec   (6687 perm/sec)   p_kst 5.181000e-01   p_cons 8.211000e-01   p_joint 7.032000e-01

Outputting figure to mutsig2_images.part000000000089/KEL.4_2275_10000_0.5181_0.8211_0.7032.png
                gene_name: KEL
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 53 percent done.
KHDRBS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.652199e-02	ci left: 1.628811e-01	ci right 1.777115e-01	k: 1702	n:10000
Cons ci ratio: 1.985870e-01	ci left: 3.376644e-02	ci right 4.130605e-02	k: 374	n:10000
KS ci ratio: 2.123069e-02	ci left: 7.648635e-01	ci right 7.813771e-01	k: 7732	n:10000
KHDRBS3   10000 perm   1 sec   (6900 perm/sec)   p_kst 7.732000e-01   p_cons 3.740000e-02   p_joint 1.702000e-01

Joint ci ratio: 7.106269e-02	ci left: 1.273376e-01	ci right 1.367697e-01	k: 2640	n:20000
Cons ci ratio: 1.422079e-01	ci left: 3.399185e-02	ci right 3.924397e-02	k: 731	n:20000
KS ci ratio: 1.515563e-02	ci left: 7.639523e-01	ci right 7.756691e-01	k: 15397	n:20000
KHDRBS3   20000 perm   3 sec   (6200 perm/sec)   p_kst 7.698500e-01   p_cons 3.655000e-02   p_joint 1.320000e-01

Joint ci ratio: 5.475798e-02	ci left: 1.418902e-01	ci right 1.499118e-01	k: 4376	n:30000
Cons ci ratio: 1.158397e-01	ci left: 3.463305e-02	ci right 3.892393e-02	k: 1102	n:30000
KS ci ratio: 1.233552e-02	ci left: 7.661688e-01	ci right 7.757120e-01	k: 23129	n:30000
KHDRBS3   30000 perm   5 sec   (5929 perm/sec)   p_kst 7.709667e-01   p_cons 3.673333e-02   p_joint 1.458667e-01

Joint ci ratio: 5.026031e-02	ci left: 1.286724e-01	ci right 1.353311e-01	k: 5279	n:40000
Cons ci ratio: 9.888669e-02	ci left: 3.592777e-02	ci right 3.968971e-02	k: 1511	n:40000
KS ci ratio: 1.070984e-02	ci left: 7.659194e-01	ci right 7.741914e-01	k: 30803	n:40000
KHDRBS3   40000 perm   7 sec   (5734 perm/sec)   p_kst 7.700750e-01   p_cons 3.777500e-02   p_joint 1.319750e-01

Outputting figure to mutsig2_images.part000000000089/KHDRBS3.4_1077_40000_0.77007_0.037775_0.13198.png
                gene_name: KHDRBS3
               theta_stop: 0.099 
                    nperm: 40000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.038 
      ci_cons_bounds_left: 0.036 
     ci_cons_bounds_right: 0.040 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 54 percent done.
KCNN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.395987e-02	ci left: 8.811437e-01	ci right 8.936296e-01	k: 8875	n:10000
Cons ci ratio: 4.062302e-02	ci left: 4.722629e-01	ci right 4.919476e-01	k: 4821	n:10000
KS ci ratio: 3.133409e-02	ci left: 6.004598e-01	ci right 6.196761e-01	k: 6101	n:10000
KCNN1   10000 perm   1 sec   (6955 perm/sec)   p_kst 6.101000e-01   p_cons 4.821000e-01   p_joint 8.875000e-01

Outputting figure to mutsig2_images.part000000000089/KCNN1.3_1668_10000_0.6101_0.4821_0.8875.png
                gene_name: KCNN1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 56 percent done.
KCNN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.340175e-02	ci left: 8.892362e-01	ci right 9.013324e-01	k: 8954	n:10000
KS ci ratio: 1.446489e-02	ci left: 8.736745e-01	ci right 8.865032e-01	k: 8802	n:10000
KCNN4   10000 perm   1 sec   (7215 perm/sec)   p_kst 8.802000e-01   p_cons 8.954000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000089/KCNN4.3_1316_10000_0.8802_0.8954_1.png
                gene_name: KCNN4
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 58 percent done.
KCNQ1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.244374e-01	ci left: 2.627129e-02	ci right 3.300643e-02	k: 295	n:10000
Cons ci ratio: 4.479208e-01	ci left: 5.903663e-03	ci right 9.392367e-03	k: 75	n:10000
KS ci ratio: 7.068593e-02	ci left: 2.268166e-01	ci right 2.435379e-01	k: 2351	n:10000
KCNQ1   10000 perm   1 sec   (6795 perm/sec)   p_kst 2.351000e-01   p_cons 7.500000e-03   p_joint 2.950000e-02

Joint ci ratio: 1.410125e-01	ci left: 3.457132e-02	ci right 3.986432e-02	k: 743	n:20000
Cons ci ratio: 3.349842e-01	ci left: 5.662386e-03	ci right 7.984485e-03	k: 135	n:20000
KS ci ratio: 4.978237e-02	ci left: 2.307236e-01	ci right 2.425531e-01	k: 4732	n:20000
KCNQ1   20000 perm   3 sec   (6113 perm/sec)   p_kst 2.366000e-01   p_cons 6.750000e-03   p_joint 3.715000e-02

Joint ci ratio: 8.486246e-02	ci left: 6.357533e-02	ci right 6.924233e-02	k: 1991	n:30000
Cons ci ratio: 2.670038e-01	ci left: 6.181212e-03	ci right 8.116082e-03	k: 213	n:30000
KS ci ratio: 4.094385e-02	ci left: 2.292184e-01	ci right 2.388331e-01	k: 7020	n:30000
KCNQ1   30000 perm   5 sec   (5825 perm/sec)   p_kst 2.340000e-01   p_cons 7.100000e-03   p_joint 6.636667e-02

Joint ci ratio: 9.308785e-02	ci left: 4.047056e-02	ci right 4.444621e-02	k: 1697	n:40000
Cons ci ratio: 2.210564e-01	ci left: 6.937641e-03	ci right 8.684950e-03	k: 311	n:40000
KS ci ratio: 3.537543e-02	ci left: 2.307027e-01	ci right 2.390359e-01	k: 9394	n:40000
KCNQ1   40000 perm   7 sec   (5603 perm/sec)   p_kst 2.348500e-01   p_cons 7.775000e-03   p_joint 4.242500e-02

Joint ci ratio: 9.140309e-02	ci left: 3.385598e-02	ci right 3.711824e-02	k: 1773	n:50000
Cons ci ratio: 2.100080e-01	ci left: 6.193167e-03	ci right 7.664955e-03	k: 345	n:50000
KS ci ratio: 3.161571e-02	ci left: 2.314282e-01	ci right 2.388825e-01	k: 11757	n:50000
KCNQ1   50000 perm   9 sec   (5449 perm/sec)   p_kst 2.351400e-01   p_cons 6.900000e-03   p_joint 3.546000e-02

Joint ci ratio: 7.721722e-02	ci left: 3.959085e-02	ci right 4.278705e-02	k: 2470	n:60000
Cons ci ratio: 1.881388e-01	ci left: 6.507312e-03	ci right 7.874341e-03	k: 430	n:60000
KS ci ratio: 2.896793e-02	ci left: 2.304346e-01	ci right 2.372245e-01	k: 14029	n:60000
KCNQ1   60000 perm   11 sec   (5335 perm/sec)   p_kst 2.338167e-01   p_cons 7.166667e-03   p_joint 4.116667e-02

Joint ci ratio: 7.056055e-02	ci left: 4.073657e-02	ci right 4.373010e-02	k: 2955	n:70000
Cons ci ratio: 1.762844e-01	ci left: 6.395741e-03	ci right 7.645649e-03	k: 490	n:70000
KS ci ratio: 2.679382e-02	ci left: 2.310240e-01	ci right 2.373123e-01	k: 16391	n:70000
KCNQ1   70000 perm   13 sec   (5227 perm/sec)   p_kst 2.341571e-01   p_cons 7.000000e-03   p_joint 4.221429e-02

Joint ci ratio: 7.114304e-02	ci left: 3.526023e-02	ci right 3.787352e-02	k: 2924	n:80000
Cons ci ratio: 1.679621e-01	ci left: 6.194303e-03	ci right 7.341906e-03	k: 540	n:80000
KS ci ratio: 2.510158e-02	ci left: 2.306839e-01	ci right 2.365605e-01	k: 18689	n:80000
KCNQ1   80000 perm   16 sec   (5116 perm/sec)   p_kst 2.336125e-01   p_cons 6.750000e-03   p_joint 3.655000e-02

Joint ci ratio: 6.539726e-02	ci left: 3.713205e-02	ci right 3.965337e-02	k: 3454	n:90000
Cons ci ratio: 1.581765e-01	ci left: 6.241458e-03	ci right 7.324032e-03	k: 609	n:90000
KS ci ratio: 2.363172e-02	ci left: 2.313699e-01	ci right 2.369140e-01	k: 21072	n:90000
KCNQ1   90000 perm   18 sec   (5008 perm/sec)   p_kst 2.341333e-01   p_cons 6.766667e-03   p_joint 3.837778e-02

Joint ci ratio: 6.188966e-02	ci left: 3.737502e-02	ci right 3.977184e-02	k: 3856	n:100000
Cons ci ratio: 1.513895e-01	ci left: 6.155607e-03	ci right 7.173324e-03	k: 665	n:100000
KS ci ratio: 2.243056e-02	ci left: 2.313289e-01	ci right 2.365865e-01	k: 23395	n:100000
KCNQ1   100000 perm   20 sec   (4904 perm/sec)   p_kst 2.339500e-01   p_cons 6.650000e-03   p_joint 3.856000e-02

Joint ci ratio: 6.046753e-02	ci left: 3.568614e-02	ci right 3.792019e-02	k: 4047	n:110000
Cons ci ratio: 1.440083e-01	ci left: 6.208875e-03	ci right 7.181045e-03	k: 735	n:110000
KS ci ratio: 2.138378e-02	ci left: 2.315006e-01	ci right 2.365135e-01	k: 25740	n:110000
KCNQ1   110000 perm   23 sec   (4815 perm/sec)   p_kst 2.340000e-01   p_cons 6.681818e-03   p_joint 3.679091e-02

Joint ci ratio: 5.820876e-02	ci left: 3.535563e-02	ci right 3.748352e-02	k: 4369	n:120000
Cons ci ratio: 1.386540e-01	ci left: 6.157702e-03	ci right 7.083050e-03	k: 793	n:120000
KS ci ratio: 2.042645e-02	ci left: 2.324289e-01	ci right 2.372339e-01	k: 28179	n:120000
KCNQ1   120000 perm   25 sec   (4731 perm/sec)   p_kst 2.348250e-01   p_cons 6.608333e-03   p_joint 3.640833e-02

Joint ci ratio: 5.755466e-02	ci left: 3.346133e-02	ci right 3.545181e-02	k: 4478	n:130000
Cons ci ratio: 1.325312e-01	ci left: 6.241409e-03	ci right 7.134656e-03	k: 868	n:130000
KS ci ratio: 1.960845e-02	ci left: 2.328276e-01	ci right 2.374458e-01	k: 30567	n:130000
KCNQ1   130000 perm   28 sec   (4653 perm/sec)   p_kst 2.351308e-01   p_cons 6.676923e-03   p_joint 3.444615e-02

Joint ci ratio: 5.470524e-02	ci left: 3.440990e-02	ci right 3.635226e-02	k: 4952	n:140000
Cons ci ratio: 1.280445e-01	ci left: 6.224015e-03	ci right 7.082324e-03	k: 930	n:140000
KS ci ratio: 1.888895e-02	ci left: 2.330301e-01	ci right 2.374809e-01	k: 32935	n:140000
KCNQ1   140000 perm   31 sec   (4571 perm/sec)   p_kst 2.352500e-01   p_cons 6.642857e-03   p_joint 3.537143e-02

Joint ci ratio: 5.325097e-02	ci left: 3.393742e-02	ci right 3.580061e-02	k: 5229	n:150000
Cons ci ratio: 1.232990e-01	ci left: 6.280461e-03	ci right 7.112112e-03	k: 1003	n:150000
KS ci ratio: 1.825609e-02	ci left: 2.329558e-01	ci right 2.372544e-01	k: 35265	n:150000
KCNQ1   150000 perm   33 sec   (4495 perm/sec)   p_kst 2.351000e-01   p_cons 6.686667e-03   p_joint 3.486000e-02

Joint ci ratio: 5.148200e-02	ci left: 3.406777e-02	ci right 3.587413e-02	k: 5594	n:160000
Cons ci ratio: 1.196615e-01	ci left: 6.263655e-03	ci right 7.066879e-03	k: 1065	n:160000
KS ci ratio: 1.765738e-02	ci left: 2.334101e-01	ci right 2.375745e-01	k: 37678	n:160000
KCNQ1   160000 perm   36 sec   (4422 perm/sec)   p_kst 2.354875e-01   p_cons 6.656250e-03   p_joint 3.496250e-02

Joint ci ratio: 5.492772e-02	ci left: 2.828867e-02	ci right 2.989215e-02	k: 4944	n:170000
Cons ci ratio: 1.090679e-01	ci left: 7.129684e-03	ci right 7.957831e-03	k: 1281	n:170000
KS ci ratio: 1.712149e-02	ci left: 2.336547e-01	ci right 2.376955e-01	k: 40064	n:170000
KCNQ1   170000 perm   39 sec   (4353 perm/sec)   p_kst 2.356706e-01   p_cons 7.535294e-03   p_joint 2.908235e-02

Joint ci ratio: 4.941226e-02	ci left: 3.294794e-02	ci right 3.462268e-02	k: 6080	n:180000
Cons ci ratio: 1.060900e-01	ci left: 7.128234e-03	ci right 7.932194e-03	k: 1354	n:180000
KS ci ratio: 1.662366e-02	ci left: 2.340454e-01	ci right 2.379742e-01	k: 42481	n:180000
KCNQ1   180000 perm   42 sec   (4288 perm/sec)   p_kst 2.360056e-01   p_cons 7.522222e-03   p_joint 3.377778e-02

Joint ci ratio: 5.174355e-02	ci left: 2.856184e-02	ci right 3.008415e-02	k: 5570	n:190000
Cons ci ratio: 1.038206e-01	ci left: 7.060550e-03	ci right 7.838802e-03	k: 1414	n:190000
KS ci ratio: 1.617913e-02	ci left: 2.341236e-01	ci right 2.379476e-01	k: 44846	n:190000
KCNQ1   190000 perm   45 sec   (4219 perm/sec)   p_kst 2.360316e-01   p_cons 7.442105e-03   p_joint 2.931579e-02

Joint ci ratio: 4.931903e-02	ci left: 2.986431e-02	ci right 3.137934e-02	k: 6123	n:200000
Cons ci ratio: 1.016214e-01	ci left: 7.009549e-03	ci right 7.764835e-03	k: 1476	n:200000
KS ci ratio: 1.578706e-02	ci left: 2.337714e-01	ci right 2.374963e-01	k: 47126	n:200000
KCNQ1   200000 perm   48 sec   (4157 perm/sec)   p_kst 2.356300e-01   p_cons 7.380000e-03   p_joint 3.061500e-02

Joint ci ratio: 5.358821e-02	ci left: 2.418134e-02	ci right 2.551753e-02	k: 5217	n:210000
Cons ci ratio: 9.907103e-02	ci left: 7.033230e-03	ci right 7.770942e-03	k: 1553	n:210000
KS ci ratio: 1.543298e-02	ci left: 2.332021e-01	ci right 2.368338e-01	k: 49353	n:210000
KCNQ1   210000 perm   51 sec   (4094 perm/sec)   p_kst 2.350143e-01   p_cons 7.395238e-03   p_joint 2.484286e-02

Outputting figure to mutsig2_images.part000000000089/KCNQ1.3_2104_210000_0.23501_0.0073952_0.024843.png
                gene_name: KCNQ1
               theta_stop: 0.099 
                    nperm: 210000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.0074 
      ci_cons_bounds_left: 0.0070 
     ci_cons_bounds_right: 0.0078 
                  p_joint: 0.025 
     ci_joint_bounds_left: 0.024 
    ci_joint_bounds_right: 0.026 

Current progress: 59 percent done.
KCNQ4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.869571e-02	ci left: 4.965503e-01	ci right 5.162460e-01	k: 5064	n:10000
Cons ci ratio: 5.032798e-02	ci left: 3.679857e-01	ci right 3.870857e-01	k: 3775	n:10000
KS ci ratio: 4.568101e-02	ci left: 4.142874e-01	ci right 4.337569e-01	k: 4240	n:10000
KCNQ4   10000 perm   1 sec   (6719 perm/sec)   p_kst 4.240000e-01   p_cons 3.775000e-01   p_joint 5.064000e-01

Outputting figure to mutsig2_images.part000000000089/KCNQ4.3_2144_10000_0.424_0.3775_0.5064.png
                gene_name: KCNQ4
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 61 percent done.
KCNS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.589946e-02	ci left: 6.869792e-01	ci right 7.051065e-01	k: 6961	n:10000
Cons ci ratio: 6.259518e-02	ci left: 2.727991e-01	ci right 2.905282e-01	k: 2816	n:10000
KS ci ratio: 3.169081e-02	ci left: 5.950381e-01	ci right 6.143009e-01	k: 6047	n:10000
KCNS2   10000 perm   1 sec   (7113 perm/sec)   p_kst 6.047000e-01   p_cons 2.816000e-01   p_joint 6.961000e-01

Outputting figure to mutsig2_images.part000000000089/KCNS2.3_1438_10000_0.6047_0.2816_0.6961.png
                gene_name: KCNS2
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 63 percent done.
KDM4C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.574205e-02	ci left: 3.215787e-01	ci right 3.401199e-01	k: 3308	n:10000
Cons ci ratio: 2.891436e-02	ci left: 6.381450e-01	ci right 6.569690e-01	k: 6476	n:10000
KS ci ratio: 9.655248e-02	ci left: 1.346260e-01	ci right 1.483836e-01	k: 1414	n:10000
KDM4C   10000 perm   2 sec   (5936 perm/sec)   p_kst 1.414000e-01   p_cons 6.476000e-01   p_joint 3.308000e-01

Outputting figure to mutsig2_images.part000000000089/KDM4C.3_3497_10000_0.1414_0.6476_0.3308.png
                gene_name: KDM4C
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 64 percent done.
KDM4D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.873093e-02	ci left: 6.410619e-01	ci right 6.598504e-01	k: 6505	n:10000
KS ci ratio: 2.234819e-02	ci left: 7.461435e-01	ci right 7.631079e-01	k: 7547	n:10000
KDM4D   10000 perm   1 sec   (6770 perm/sec)   p_kst 7.547000e-01   p_cons 6.505000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000089/KDM4D.3_1576_10000_0.7547_0.6505_1.png
                gene_name: KDM4D
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 66 percent done.
KDM5D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.536721e-03	ci left: 9.505438e-01	ci right 9.587887e-01	k: 9548	n:10000
Cons ci ratio: 3.230402e-02	ci left: 5.858039e-01	ci right 6.051404e-01	k: 5955	n:10000
KS ci ratio: 2.702516e-02	ci left: 6.685399e-01	ci right 6.869564e-01	k: 6778	n:10000
KDM5D   10000 perm   2 sec   (5868 perm/sec)   p_kst 6.778000e-01   p_cons 5.955000e-01   p_joint 9.548000e-01

Outputting figure to mutsig2_images.part000000000089/KDM5D.3_4821_10000_0.6778_0.5955_0.9548.png
                gene_name: KDM5D
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 68 percent done.
KCNK17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.795749e-02	ci left: 1.583626e-01	ci right 1.730327e-01	k: 1656	n:10000
Cons ci ratio: 1.738085e-01	ci left: 4.417993e-02	ci right 5.268561e-02	k: 483	n:10000
KS ci ratio: 4.637988e-02	ci left: 4.069129e-01	ci right 4.263357e-01	k: 4166	n:10000
KCNK17   10000 perm   1 sec   (7613 perm/sec)   p_kst 4.166000e-01   p_cons 4.830000e-02   p_joint 1.656000e-01

Joint ci ratio: 7.423726e-02	ci left: 1.177895e-01	ci right 1.269206e-01	k: 2446	n:20000
Cons ci ratio: 1.280629e-01	ci left: 4.187748e-02	ci right 4.765581e-02	k: 894	n:20000
KS ci ratio: 3.278169e-02	ci left: 4.100045e-01	ci right 4.237197e-01	k: 8337	n:20000
KCNK17   20000 perm   3 sec   (6642 perm/sec)   p_kst 4.168500e-01   p_cons 4.470000e-02   p_joint 1.223000e-01

Joint ci ratio: 7.859634e-02	ci left: 7.354946e-02	ci right 7.959951e-02	k: 2296	n:30000
Cons ci ratio: 1.029485e-01	ci left: 4.372192e-02	ci right 4.849981e-02	k: 1382	n:30000
KS ci ratio: 2.667633e-02	ci left: 4.129092e-01	ci right 4.241066e-01	k: 12555	n:30000
KCNK17   30000 perm   5 sec   (6184 perm/sec)   p_kst 4.185000e-01   p_cons 4.606667e-02   p_joint 7.653333e-02

Joint ci ratio: 7.808127e-02	ci left: 5.695590e-02	ci right 6.160834e-02	k: 2370	n:40000
Cons ci ratio: 8.845457e-02	ci left: 4.472617e-02	ci right 4.888994e-02	k: 1871	n:40000
KS ci ratio: 2.305415e-02	ci left: 4.146825e-01	ci right 4.243792e-01	k: 16781	n:40000
KCNK17   40000 perm   7 sec   (5985 perm/sec)   p_kst 4.195250e-01   p_cons 4.677500e-02   p_joint 5.925000e-02

Outputting figure to mutsig2_images.part000000000089/KCNK17.2_1151_40000_0.41952_0.046775_0.05925.png
                gene_name: KCNK17
               theta_stop: 0.088 
                    nperm: 40000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.047 
      ci_cons_bounds_left: 0.045 
     ci_cons_bounds_right: 0.049 
                  p_joint: 0.059 
     ci_joint_bounds_left: 0.057 
    ci_joint_bounds_right: 0.062 

Current progress: 69 percent done.
KCNMB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.491220e-02	ci left: 5.477998e-01	ci right 5.673666e-01	k: 5576	n:10000
Cons ci ratio: 1.189079e-02	ci left: 9.101855e-01	ci right 9.211709e-01	k: 9158	n:10000
KS ci ratio: 6.666854e-02	ci left: 2.482593e-01	ci right 2.654825e-01	k: 2568	n:10000
KCNMB1   10000 perm   1 sec   (7691 perm/sec)   p_kst 2.568000e-01   p_cons 9.158000e-01   p_joint 5.576000e-01

Outputting figure to mutsig2_images.part000000000089/KCNMB1.2_588_10000_0.2568_0.9158_0.5576.png
                gene_name: KCNMB1
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 71 percent done.
KCNMB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.146594e-02	ci left: 5.984516e-01	ci right 6.176854e-01	k: 6081	n:10000
Cons ci ratio: 7.113958e-03	ci left: 9.645717e-01	ci right 9.715522e-01	k: 9682	n:10000
KS ci ratio: 3.693905e-02	ci left: 5.197599e-01	ci right 5.394228e-01	k: 5296	n:10000
KCNMB4   10000 perm   1 sec   (7535 perm/sec)   p_kst 5.296000e-01   p_cons 9.682000e-01   p_joint 6.081000e-01

Outputting figure to mutsig2_images.part000000000089/KCNMB4.2_645_10000_0.5296_0.9682_0.6081.png
                gene_name: KCNMB4
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 73 percent done.
KCNS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.140007e-02	ci left: 7.620288e-01	ci right 7.786135e-01	k: 7704	n:10000
Cons ci ratio: 2.722332e-02	ci left: 6.653172e-01	ci right 6.837810e-01	k: 6746	n:10000
KS ci ratio: 4.454027e-02	ci left: 4.266495e-01	ci right 4.461876e-01	k: 4364	n:10000
KCNS1   10000 perm   1 sec   (6980 perm/sec)   p_kst 4.364000e-01   p_cons 6.746000e-01   p_joint 7.704000e-01

Outputting figure to mutsig2_images.part000000000089/KCNS1.2_1593_10000_0.4364_0.6746_0.7704.png
                gene_name: KCNS1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 75 percent done.
KCNS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.209850e-01	ci left: 8.922438e-02	ci right 1.008128e-01	k: 949	n:10000
KS ci ratio: 2.723572e-02	ci left: 6.651158e-01	ci right 6.835825e-01	k: 6744	n:10000
KCNS3   10000 perm   1 sec   (7016 perm/sec)   p_kst 6.744000e-01   p_cons 9.490000e-02   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 8.557586e-02	ci left: 9.087233e-02	ci right 9.904586e-02	k: 1898	n:20000
KS ci ratio: 1.938873e-02	ci left: 6.648910e-01	ci right 6.779591e-01	k: 13429	n:20000
KCNS3   20000 perm   3 sec   (6068 perm/sec)   p_kst 6.714500e-01   p_cons 9.490000e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000089/KCNS3.2_1480_20000_0.67145_0.0949_1.png
                gene_name: KCNS3
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.095 
      ci_cons_bounds_left: 0.091 
     ci_cons_bounds_right: 0.099 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
KCNV2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.344901e-03	ci left: 9.417001e-01	ci right 9.506377e-01	k: 9463	n:10000
Cons ci ratio: 1.914040e-02	ci left: 7.996335e-01	ci right 8.151870e-01	k: 8075	n:10000
KS ci ratio: 1.902955e-02	ci left: 8.014606e-01	ci right 8.169589e-01	k: 8093	n:10000
KCNV2   10000 perm   1 sec   (6867 perm/sec)   p_kst 8.093000e-01   p_cons 8.075000e-01   p_joint 9.463000e-01

Outputting figure to mutsig2_images.part000000000089/KCNV2.2_1646_10000_0.8093_0.8075_0.9463.png
                gene_name: KCNV2
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 78 percent done.
KCTD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.721333e-01	ci left: 4.504270e-02	ci right 5.362227e-02	k: 492	n:10000
Cons ci ratio: 1.377594e-01	ci left: 6.971834e-02	ci right 8.013090e-02	k: 748	n:10000
KS ci ratio: 5.243755e-02	ci left: 3.489937e-01	ci right 3.678888e-01	k: 3584	n:10000
KCTD1   10000 perm   2 sec   (6469 perm/sec)   p_kst 3.584000e-01   p_cons 7.480000e-02   p_joint 4.920000e-02

Joint ci ratio: 1.233734e-01	ci left: 4.507829e-02	ci right 5.105398e-02	k: 960	n:20000
Cons ci ratio: 9.984730e-02	ci left: 6.796658e-02	ci right 7.515858e-02	k: 1430	n:20000
KS ci ratio: 3.732191e-02	ci left: 3.488128e-01	ci right 3.621293e-01	k: 7109	n:20000
KCTD1   20000 perm   3 sec   (5828 perm/sec)   p_kst 3.554500e-01   p_cons 7.150000e-02   p_joint 4.800000e-02

Joint ci ratio: 1.310347e-01	ci left: 2.706564e-02	ci right 3.089297e-02	k: 868	n:30000
Cons ci ratio: 8.211420e-02	ci left: 6.769370e-02	ci right 7.352312e-02	k: 2117	n:30000
KS ci ratio: 3.056873e-02	ci left: 3.486196e-01	ci right 3.594754e-01	k: 10621	n:30000
KCTD1   30000 perm   5 sec   (5564 perm/sec)   p_kst 3.540333e-01   p_cons 7.056667e-02   p_joint 2.893333e-02

Joint ci ratio: 1.141239e-01	ci left: 2.701267e-02	ci right 3.030623e-02	k: 1145	n:40000
Cons ci ratio: 7.104559e-02	ci left: 6.820681e-02	ci right 7.325572e-02	k: 2828	n:40000
KS ci ratio: 2.664149e-02	ci left: 3.464707e-01	ci right 3.558509e-01	k: 14046	n:40000
KCTD1   40000 perm   7 sec   (5394 perm/sec)   p_kst 3.511500e-01   p_cons 7.070000e-02   p_joint 2.862500e-02

Joint ci ratio: 8.206641e-02	ci left: 4.184626e-02	ci right 4.544697e-02	k: 2181	n:50000
Cons ci ratio: 6.350901e-02	ci left: 6.854706e-02	ci right 7.306292e-02	k: 3539	n:50000
KS ci ratio: 2.389989e-02	ci left: 3.456186e-01	ci right 3.539988e-01	k: 17490	n:50000
KCTD1   50000 perm   10 sec   (5253 perm/sec)   p_kst 3.498000e-01   p_cons 7.078000e-02   p_joint 4.362000e-02

Outputting figure to mutsig2_images.part000000000089/KCTD1.2_2618_50000_0.3498_0.07078_0.04362.png
                gene_name: KCTD1
               theta_stop: 0.082 
                    nperm: 50000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.071 
      ci_cons_bounds_left: 0.069 
     ci_cons_bounds_right: 0.073 
                  p_joint: 0.044 
     ci_joint_bounds_left: 0.042 
    ci_joint_bounds_right: 0.045 

Current progress: 80 percent done.
KCTD10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.963549e-02	ci left: 4.845536e-01	ci right 5.042496e-01	k: 4944	n:10000
Cons ci ratio: 3.576213e-02	ci left: 5.358791e-01	ci right 5.554943e-01	k: 5457	n:10000
KS ci ratio: 9.491770e-02	ci left: 1.387411e-01	ci right 1.526660e-01	k: 1456	n:10000
KCTD10   10000 perm   1 sec   (7279 perm/sec)   p_kst 1.456000e-01   p_cons 5.457000e-01   p_joint 4.944000e-01

Outputting figure to mutsig2_images.part000000000089/KCTD10.2_970_10000_0.1456_0.5457_0.4944.png
                gene_name: KCTD10
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 81 percent done.
KCTD14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.436366e-02	ci left: 5.556165e-01	ci right 5.751454e-01	k: 5654	n:10000
Cons ci ratio: 4.874877e-02	ci left: 3.830114e-01	ci right 4.022512e-01	k: 3926	n:10000
KS ci ratio: 5.527957e-02	ci left: 3.252519e-01	ci right 3.438446e-01	k: 3345	n:10000
KCTD14   10000 perm   1 sec   (7697 perm/sec)   p_kst 3.345000e-01   p_cons 3.926000e-01   p_joint 5.654000e-01

Outputting figure to mutsig2_images.part000000000089/KCTD14.2_776_10000_0.3345_0.3926_0.5654.png
                gene_name: KCTD14
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 83 percent done.
KCTD21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.276977e-02	ci left: 3.461116e-01	ci right 3.649727e-01	k: 3555	n:10000
Cons ci ratio: 5.753939e-02	ci left: 3.077853e-01	ci right 3.261214e-01	k: 3169	n:10000
KS ci ratio: 1.877649e-02	ci left: 8.056233e-01	ci right 8.209937e-01	k: 8134	n:10000
KCTD21   10000 perm   1 sec   (7494 perm/sec)   p_kst 8.134000e-01   p_cons 3.169000e-01   p_joint 3.555000e-01

Outputting figure to mutsig2_images.part000000000089/KCTD21.2_787_10000_0.8134_0.3169_0.3555.png
                gene_name: KCTD21
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 85 percent done.
KCTD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.599437e-02	ci left: 2.521161e-01	ci right 2.694235e-01	k: 2607	n:10000
Cons ci ratio: 2.226371e-02	ci left: 7.475594e-01	ci right 7.644912e-01	k: 7561	n:10000
KS ci ratio: 1.052060e-01	ci left: 1.154507e-01	ci right 1.283705e-01	k: 1218	n:10000
KCTD4   10000 perm   1 sec   (7499 perm/sec)   p_kst 1.218000e-01   p_cons 7.561000e-01   p_joint 2.607000e-01

Joint ci ratio: 5.109151e-02	ci left: 2.215563e-01	ci right 2.332230e-01	k: 4547	n:20000
Cons ci ratio: 1.541418e-02	ci left: 7.578503e-01	ci right 7.696729e-01	k: 15276	n:20000
KS ci ratio: 7.416821e-02	ci left: 1.179862e-01	ci right 1.271238e-01	k: 2450	n:20000
KCTD4   20000 perm   3 sec   (6719 perm/sec)   p_kst 1.225000e-01   p_cons 7.638000e-01   p_joint 2.273500e-01

Outputting figure to mutsig2_images.part000000000089/KCTD4.2_784_20000_0.1225_0.7638_0.22735.png
                gene_name: KCTD4
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 86 percent done.
KCTD7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.473567e-02	ci left: 5.503049e-01	ci right 5.698601e-01	k: 5601	n:10000
Cons ci ratio: 5.282739e-02	ci left: 3.456147e-01	ci right 3.644699e-01	k: 3550	n:10000
KS ci ratio: 5.808866e-02	ci left: 3.037185e-01	ci right 3.219906e-01	k: 3128	n:10000
KCTD7   10000 perm   1 sec   (7671 perm/sec)   p_kst 3.128000e-01   p_cons 3.550000e-01   p_joint 5.601000e-01

Outputting figure to mutsig2_images.part000000000089/KCTD7.2_891_10000_0.3128_0.355_0.5601.png
                gene_name: KCTD7
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 88 percent done.
KDELC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.906704e-02	ci left: 3.799258e-01	ci right 3.991386e-01	k: 3895	n:10000
KS ci ratio: 1.684207e-02	ci left: 8.369418e-01	ci right 8.512571e-01	k: 8442	n:10000
KDELC2   10000 perm   1 sec   (7020 perm/sec)   p_kst 8.442000e-01   p_cons 3.895000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000089/KDELC2.2_1556_10000_0.8442_0.3895_1.png
                gene_name: KDELC2
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
KDM1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.160444e-02	ci left: 3.563500e-01	ci right 3.753282e-01	k: 3658	n:10000
Cons ci ratio: 9.687168e-02	ci left: 1.338424e-01	ci right 1.475676e-01	k: 1406	n:10000
KS ci ratio: 1.266640e-01	ci left: 8.183830e-02	ci right 9.300341e-02	k: 873	n:10000
KDM1A   10000 perm   2 sec   (6431 perm/sec)   p_kst 8.730000e-02   p_cons 1.406000e-01   p_joint 3.658000e-01

Joint ci ratio: 5.310574e-02	ci left: 2.083824e-01	ci right 2.198008e-01	k: 4281	n:20000
Cons ci ratio: 6.792498e-02	ci left: 1.378798e-01	ci right 1.476244e-01	k: 2854	n:20000
KS ci ratio: 8.956675e-02	ci left: 8.347212e-02	ci right 9.134831e-02	k: 1747	n:20000
KDM1A   20000 perm   3 sec   (5831 perm/sec)   p_kst 8.735000e-02   p_cons 1.427000e-01   p_joint 2.140500e-01

Outputting figure to mutsig2_images.part000000000089/KDM1A.2_2715_20000_0.08735_0.1427_0.21405.png
                gene_name: KDM1A
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.087 
        ci_ks_bounds_left: 0.083 
       ci_ks_bounds_right: 0.091 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 92 percent done.
KDM1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.845369e-02	ci left: 3.858982e-01	ci right 4.051627e-01	k: 3955	n:10000
Cons ci ratio: 5.781958e-02	ci left: 3.057022e-01	ci right 3.240057e-01	k: 3148	n:10000
KS ci ratio: 9.537790e-02	ci left: 1.375651e-01	ci right 1.514427e-01	k: 1444	n:10000
KDM1B   10000 perm   1 sec   (6824 perm/sec)   p_kst 1.444000e-01   p_cons 3.148000e-01   p_joint 3.955000e-01

Outputting figure to mutsig2_images.part000000000089/KDM1B.2_1837_10000_0.1444_0.3148_0.3955.png
                gene_name: KDM1B
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 93 percent done.
KDM3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.095686e-02	ci left: 9.223452e-01	ci right 9.326041e-01	k: 9276	n:10000
Cons ci ratio: 2.324121e-02	ci left: 7.311828e-01	ci right 7.484773e-01	k: 7399	n:10000
KS ci ratio: 1.861556e-02	ci left: 8.082638e-01	ci right 8.235517e-01	k: 8160	n:10000
KDM3A   10000 perm   2 sec   (5913 perm/sec)   p_kst 8.160000e-01   p_cons 7.399000e-01   p_joint 9.276000e-01

Outputting figure to mutsig2_images.part000000000089/KDM3A.2_4066_10000_0.816_0.7399_0.9276.png
                gene_name: KDM3A
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 95 percent done.
KHDC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.483366e-02	ci left: 2.589418e-01	ci right 2.763938e-01	k: 2676	n:10000
Cons ci ratio: 7.496836e-02	ci left: 2.065875e-01	ci right 2.227791e-01	k: 2146	n:10000
KS ci ratio: 8.723287e-02	ci left: 1.606216e-01	ci right 1.753724e-01	k: 1679	n:10000
KHDC1   10000 perm   1 sec   (7989 perm/sec)   p_kst 1.679000e-01   p_cons 2.146000e-01   p_joint 2.676000e-01

Outputting figure to mutsig2_images.part000000000089/KHDC1.2_507_10000_0.1679_0.2146_0.2676.png
                gene_name: KHDC1
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 97 percent done.
KHDRBS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.302694e-02	ci left: 8.945686e-01	ci right 9.063969e-01	k: 9006	n:10000
Cons ci ratio: 8.397822e-02	ci left: 1.713341e-01	ci right 1.864535e-01	k: 1788	n:10000
KS ci ratio: 3.983416e-02	ci left: 4.820550e-01	ci right 5.017497e-01	k: 4919	n:10000
KHDRBS1   10000 perm   1 sec   (6846 perm/sec)   p_kst 4.919000e-01   p_cons 1.788000e-01   p_joint 9.006000e-01

Outputting figure to mutsig2_images.part000000000089/KHDRBS1.2_1368_10000_0.4919_0.1788_0.9006.png
                gene_name: KHDRBS1
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.91 

Current progress: 98 percent done.
KHK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.212039e-02	ci left: 9.070994e-01	ci right 9.182588e-01	k: 9128	n:10000
Cons ci ratio: 3.243827e-02	ci left: 5.837970e-01	ci right 6.031485e-01	k: 5935	n:10000
KS ci ratio: 5.355019e-02	ci left: 3.394541e-01	ci right 3.582340e-01	k: 3488	n:10000
KHK   10000 perm   1 sec   (6902 perm/sec)   p_kst 3.488000e-01   p_cons 5.935000e-01   p_joint 9.128000e-01

Outputting figure to mutsig2_images.part000000000089/KHK.2_1068_10000_0.3488_0.5935_0.9128.png
                gene_name: KHK
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000089
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 89 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1724>
Subject: Job 8004199: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1724>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000090> was used as the working directory.
Started at Sun Nov 11 15:07:09 2012
Results reported at Sun Nov 11 15:15:58 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000090.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000090.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 90  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000090.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    519.58 sec.
    Max Memory :      4720 MB
    Max Swap   :      7087 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
90
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 90
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 90: processing genes 8053 - 8142
Calculating significance of each gene.
Using projection method.
8053	KHNYN	5.579917e-01
8054	KHSRP	8.040535e-01
8055	KIAA0020	1
8056	KIAA0090	1
8057	KIAA0100	9.983764e-01
8058	KIAA0101	1.435013e-01
8059	KIAA0141	6.847359e-01
8060	KIAA0146	6.534607e-01
8061	KIAA0174	8.133931e-01
8062	KIAA0182	6.522920e-01
8063	KIAA0195	1
8064	KIAA0196	9.704603e-01
8065	KIAA0226	8.342301e-01
8066	KIAA0232	8.551420e-01
8067	KIAA0240	2.745135e-01
8068	KIAA0247	6.784367e-01
8069	KIAA0284	5.853126e-01
8070	KIAA0317	8.906211e-01
8071	KIAA0319	4.477151e-01
8072	KIAA0319L	7.740315e-01
8073	KIAA0355	7.864551e-01
8074	KIAA0368	9.230289e-01
8075	KIAA0391	9.002906e-01
8076	KIAA0406	1
8077	KIAA0408	1
8078	KIAA0415	4.020919e-01
8079	KIAA0427	1.745350e-01
8080	KIAA0430	9.590309e-01
8081	KIAA0467	9.999501e-01
8082	KIAA0494	3.528256e-01
8083	KIAA0495	1
8084	KIAA0513	4.395141e-02
8085	KIAA0528	3.086538e-02
8086	KIAA0556	5.590514e-01
8087	KIAA0562	7.611007e-01
8088	KIAA0564	9.358482e-01
8089	KIAA0586	6.611556e-01
8090	KIAA0649	7.350704e-01
8091	KIAA0652	4.215616e-01
8092	KIAA0664	8.759834e-01
8093	KIAA0748	8.056582e-01
8094	KIAA0753	9.455251e-01
8095	KIAA0754	5.944469e-01
8096	KIAA0776	5.807842e-01
8097	KIAA0802	6.487043e-01
8098	KIAA0831	1.484076e-01
8099	KIAA0892	1
8100	KIAA0895	4.321177e-01
8101	KIAA0895L	5.386655e-01
8102	KIAA0907	5.276497e-01
8103	KIAA0913	9.761953e-01
8104	KIAA0922	9.947344e-01
8105	KIAA0947	9.816161e-01
8106	KIAA1009	4.676397e-02
8107	KIAA1012	7.703920e-01
8108	KIAA1024	9.645609e-01
8109	KIAA1033	5.528424e-01
8110	KIAA1045	1
8111	KIAA1109	9.999998e-01
8112	KIAA1143	1
8113	KIAA1147	1
8114	KIAA1161	1
8115	KIAA1191	6.429711e-01
8116	KIAA1199	1
8117	KIAA1210	9.896607e-01
8118	KIAA1211	4.627862e-01
8119	KIAA1217	1
8120	KIAA1244	9.986612e-01
8121	KIAA1257	2.032600e-01
8122	KIAA1267	9.026581e-01
8123	KIAA1274	6.958510e-01
8124	KIAA1279	4.485616e-01
8125	KIAA1310	9.108846e-01
8126	KIAA1324	9.708879e-01
8127	KIAA1324L	4.897333e-01
8128	KIAA1328	8.102233e-01
8129	KIAA1370	8.680967e-01
8130	KIAA1377	9.272671e-01
8131	KIAA1383	1
8132	KIAA1407	2.072155e-01
8133	KIAA1409	9.998892e-01
8134	KIAA1429	9.874343e-01
8135	KIAA1430	8.231516e-01
8136	KIAA1432	9.601631e-01
8137	KIAA1462	9.924307e-01
8138	KIAA1467	1.763644e-01
8139	KIAA1468	2.581077e-01
8140	KIAA1486	7.847187e-01
8141	KIAA1522	9.591707e-01
8142	KIAA1524	9.748503e-02
Done

Running MutSig 2:
Scatter job 90: processing genes 8053 - 8142
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
KIAA1109
Processing conservation and coverage...
65% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.032889e-02	ci left: 6.159285e-01	ci right 6.349984e-01	k: 6255	n:10000
KS ci ratio: 1.089155e-02	ci left: 9.231709e-01	ci right 9.333780e-01	k: 9284	n:10000
KIAA1109   10000 perm   3 sec   (2952 perm/sec)   p_kst 9.284000e-01   p_cons 6.255000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000090/KIAA1109.21_15354_10000_0.9284_0.6255_1.png
                gene_name: KIAA1109
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 1 percent done.
KIAA1409
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.567447e-02	ci left: 1.656325e-01	ci right 1.805584e-01	k: 1730	n:10000
Cons ci ratio: 1.055229e-02	ci left: 9.274055e-01	ci right 9.373408e-01	k: 9325	n:10000
KS ci ratio: 1.254876e-01	ci left: 8.329513e-02	ci right 9.454569e-02	k: 888	n:10000
KIAA1409   10000 perm   2 sec   (4376 perm/sec)   p_kst 8.880000e-02   p_cons 9.325000e-01   p_joint 1.730000e-01

Joint ci ratio: 6.040261e-02	ci left: 1.686698e-01	ci right 1.792252e-01	k: 3478	n:20000
Cons ci ratio: 7.382320e-03	ci left: 9.302657e-01	ci right 9.372075e-01	k: 18676	n:20000
KS ci ratio: 8.854373e-02	ci left: 8.528465e-02	ci right 9.323524e-02	k: 1784	n:20000
KIAA1409   20000 perm   5 sec   (3951 perm/sec)   p_kst 8.920000e-02   p_cons 9.338000e-01   p_joint 1.739000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA1409.13_7565_20000_0.0892_0.9338_0.1739.png
                gene_name: KIAA1409
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.089 
        ci_ks_bounds_left: 0.085 
       ci_ks_bounds_right: 0.093 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 3 percent done.
KIAA1210
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.229991e-02	ci left: 7.469526e-01	ci right 7.638984e-01	k: 7555	n:10000
Cons ci ratio: 4.851453e-02	ci left: 3.853009e-01	ci right 4.045604e-01	k: 3949	n:10000
KS ci ratio: 2.675954e-02	ci left: 6.728712e-01	ci right 6.912227e-01	k: 6821	n:10000
KIAA1210   10000 perm   2 sec   (4913 perm/sec)   p_kst 6.821000e-01   p_cons 3.949000e-01   p_joint 7.555000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA1210.10_5186_10000_0.6821_0.3949_0.7555.png
                gene_name: KIAA1210
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.76 

Current progress: 4 percent done.
KIAA1211
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.118285e-02	ci left: 6.027694e-01	ci right 6.219651e-01	k: 6124	n:10000
Cons ci ratio: 1.705275e-02	ci left: 8.335820e-01	ci right 8.480189e-01	k: 8409	n:10000
KS ci ratio: 4.519813e-02	ci left: 4.194707e-01	ci right 4.389705e-01	k: 4292	n:10000
KIAA1211   10000 perm   2 sec   (5009 perm/sec)   p_kst 4.292000e-01   p_cons 8.409000e-01   p_joint 6.124000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA1211.10_3734_10000_0.4292_0.8409_0.6124.png
                gene_name: KIAA1211
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 6 percent done.
KIAA0528
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.829198e-02	ci left: 3.874911e-01	ci right 4.067689e-01	k: 3971	n:10000
Cons ci ratio: 6.773271e-02	ci left: 2.423276e-01	ci right 2.594177e-01	k: 2508	n:10000
KS ci ratio: 4.475820e-02	ci left: 4.242563e-01	ci right 4.437821e-01	k: 4340	n:10000
KIAA0528   10000 perm   2 sec   (5330 perm/sec)   p_kst 4.340000e-01   p_cons 2.508000e-01   p_joint 3.971000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0528.9_3099_10000_0.434_0.2508_0.3971.png
                gene_name: KIAA0528
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 7 percent done.
KIAA0947
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.086875e-01	ci left: 1.088101e-01	ci right 1.214151e-01	k: 1150	n:10000
Cons ci ratio: 1.716727e-02	ci left: 8.317498e-01	ci right 8.462521e-01	k: 8391	n:10000
KS ci ratio: 1.977666e-01	ci left: 3.405205e-02	ci right 4.162024e-02	k: 377	n:10000
KIAA0947   10000 perm   2 sec   (4399 perm/sec)   p_kst 3.770000e-02   p_cons 8.391000e-01   p_joint 1.150000e-01

Joint ci ratio: 7.389360e-02	ci left: 1.187734e-01	ci right 1.279364e-01	k: 2466	n:20000
Cons ci ratio: 1.140647e-02	ci left: 8.502464e-01	ci right 8.600501e-01	k: 17104	n:20000
KS ci ratio: 1.463025e-01	ci left: 3.210991e-02	ci right 3.722654e-02	k: 692	n:20000
KIAA0947   20000 perm   5 sec   (4058 perm/sec)   p_kst 3.460000e-02   p_cons 8.552000e-01   p_joint 1.233000e-01

Joint ci ratio: 7.288801e-02	ci left: 8.471927e-02	ci right 9.116079e-02	k: 2637	n:30000
Cons ci ratio: 9.497848e-03	ci left: 8.461785e-01	ci right 8.542869e-01	k: 25508	n:30000
KS ci ratio: 1.195458e-01	ci left: 3.252800e-02	ci right 3.669609e-02	k: 1037	n:30000
KIAA0947   30000 perm   8 sec   (3919 perm/sec)   p_kst 3.456667e-02   p_cons 8.502667e-01   p_joint 8.790000e-02

Joint ci ratio: 5.967353e-02	ci left: 9.446180e-02	ci right 1.002968e-01	k: 3894	n:40000
Cons ci ratio: 8.266969e-03	ci left: 8.454281e-01	ci right 8.524711e-01	k: 33959	n:40000
KS ci ratio: 1.080607e-01	ci left: 3.012635e-02	ci right 3.359205e-02	k: 1273	n:40000
KIAA0947   40000 perm   10 sec   (3827 perm/sec)   p_kst 3.182500e-02   p_cons 8.489750e-01   p_joint 9.735000e-02

Joint ci ratio: 5.739931e-02	ci left: 8.286575e-02	ci right 8.778251e-02	k: 4265	n:50000
Cons ci ratio: 7.339151e-03	ci left: 8.477274e-01	ci right 8.539918e-01	k: 42544	n:50000
KS ci ratio: 9.775170e-02	ci left: 2.963478e-02	ci right 3.269997e-02	k: 1557	n:50000
KIAA0947   50000 perm   13 sec   (3754 perm/sec)   p_kst 3.114000e-02   p_cons 8.508800e-01   p_joint 8.530000e-02

Outputting figure to mutsig2_images.part000000000090/KIAA0947.9_6877_50000_0.03114_0.85088_0.0853.png
                gene_name: KIAA0947
               theta_stop: 0.098 
                    nperm: 50000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.030 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.085 
     ci_joint_bounds_left: 0.083 
    ci_joint_bounds_right: 0.088 

Current progress: 9 percent done.
KIAA1009
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.873843e-02	ci left: 2.368921e-01	ci right 2.538565e-01	k: 2453	n:10000
Cons ci ratio: 1.013601e-01	ci left: 1.234670e-01	ci right 1.367493e-01	k: 1300	n:10000
KS ci ratio: 4.739627e-02	ci left: 3.964531e-01	ci right 4.158017e-01	k: 4061	n:10000
KIAA1009   10000 perm   2 sec   (5414 perm/sec)   p_kst 4.061000e-01   p_cons 1.300000e-01   p_joint 2.453000e-01

Joint ci ratio: 5.172485e-02	ci left: 2.172962e-01	ci right 2.288844e-01	k: 4461	n:20000
Cons ci ratio: 7.148428e-02	ci left: 1.260082e-01	ci right 1.353995e-01	k: 2613	n:20000
KS ci ratio: 3.236387e-02	ci left: 4.162395e-01	ci right 4.299828e-01	k: 8462	n:20000
KIAA1009   20000 perm   4 sec   (4881 perm/sec)   p_kst 4.231000e-01   p_cons 1.306500e-01   p_joint 2.230500e-01

Outputting figure to mutsig2_images.part000000000090/KIAA1009.9_4316_20000_0.4231_0.13065_0.22305.png
                gene_name: KIAA1009
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 10 percent done.
KIAA1024
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.571689e-02	ci left: 3.217772e-01	ci right 3.403213e-01	k: 3310	n:10000
Cons ci ratio: 5.424083e-02	ci left: 3.336927e-01	ci right 3.523989e-01	k: 3430	n:10000
KS ci ratio: 5.740679e-02	ci left: 3.087773e-01	ci right 3.271288e-01	k: 3179	n:10000
KIAA1024   10000 perm   2 sec   (5580 perm/sec)   p_kst 3.179000e-01   p_cons 3.430000e-01   p_joint 3.310000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA1024.8_2763_10000_0.3179_0.343_0.331.png
                gene_name: KIAA1024
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 12 percent done.
KIAA0368
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.515566e-02	ci left: 8.632507e-01	ci right 8.765330e-01	k: 8700	n:10000
Cons ci ratio: 2.162976e-02	ci left: 7.581825e-01	ci right 7.748620e-01	k: 7666	n:10000
KS ci ratio: 2.851016e-02	ci left: 6.445828e-01	ci right 6.633275e-01	k: 6540	n:10000
KIAA0368   10000 perm   2 sec   (4921 perm/sec)   p_kst 6.540000e-01   p_cons 7.666000e-01   p_joint 8.700000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0368.7_6258_10000_0.654_0.7666_0.87.png
                gene_name: KIAA0368
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.88 

Current progress: 13 percent done.
KIAA0556
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.359396e-02	ci left: 8.864693e-01	ci right 8.987010e-01	k: 8927	n:10000
Cons ci ratio: 1.649515e-02	ci left: 8.424422e-01	ci right 8.565536e-01	k: 8496	n:10000
KS ci ratio: 2.465674e-02	ci left: 7.075543e-01	ci right 7.253194e-01	k: 7165	n:10000
KIAA0556   10000 perm   2 sec   (4502 perm/sec)   p_kst 7.165000e-01   p_cons 8.496000e-01   p_joint 8.927000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0556.7_4969_10000_0.7165_0.8496_0.8927.png
                gene_name: KIAA0556
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 15 percent done.
KIAA1377
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.624746e-02	ci left: 1.637654e-01	ci right 1.786266e-01	k: 1711	n:10000
Cons ci ratio: 3.516050e-02	ci left: 5.442931e-01	ci right 5.638753e-01	k: 5541	n:10000
KS ci ratio: 1.209147e-01	ci left: 8.932164e-02	ci right 1.009155e-01	k: 950	n:10000
KIAA1377   10000 perm   2 sec   (5513 perm/sec)   p_kst 9.500000e-02   p_cons 5.541000e-01   p_joint 1.711000e-01

Joint ci ratio: 6.418008e-02	ci left: 1.521312e-01	ci right 1.622687e-01	k: 3143	n:20000
Cons ci ratio: 2.493686e-02	ci left: 5.457268e-01	ci right 5.595579e-01	k: 11053	n:20000
KS ci ratio: 8.469174e-02	ci left: 9.263781e-02	ci right 1.008798e-01	k: 1934	n:20000
KIAA1377   20000 perm   4 sec   (5089 perm/sec)   p_kst 9.670000e-02   p_cons 5.526500e-01   p_joint 1.571500e-01

Outputting figure to mutsig2_images.part000000000090/KIAA1377.7_3398_20000_0.0967_0.55265_0.15715.png
                gene_name: KIAA1377
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.097 
        ci_ks_bounds_left: 0.093 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 16 percent done.
KIAA1468
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.060133e-02	ci left: 6.117087e-01	ci right 6.308206e-01	k: 6213	n:10000
Cons ci ratio: 7.118065e-02	ci left: 2.243482e-01	ci right 2.410078e-01	k: 2326	n:10000
KS ci ratio: 2.434755e-02	ci left: 7.127015e-01	ci right 7.303692e-01	k: 7216	n:10000
KIAA1468   10000 perm   2 sec   (5210 perm/sec)   p_kst 7.216000e-01   p_cons 2.326000e-01   p_joint 6.213000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA1468.7_3767_10000_0.7216_0.2326_0.6213.png
                gene_name: KIAA1468
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 18 percent done.
KIAA1486
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.847238e-02	ci left: 6.451864e-01	ci right 6.639235e-01	k: 6546	n:10000
KS ci ratio: 1.117529e-02	ci left: 9.195597e-01	ci right 9.299912e-01	k: 9249	n:10000
KIAA1486   10000 perm   2 sec   (5912 perm/sec)   p_kst 9.249000e-01   p_cons 6.546000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000090/KIAA1486.7_1982_10000_0.9249_0.6546_1.png
                gene_name: KIAA1486
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 19 percent done.
KIAA1524
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.830261e-02	ci left: 6.479030e-01	ci right 6.666053e-01	k: 6573	n:10000
KS ci ratio: 1.679085e-02	ci left: 8.377565e-01	ci right 8.520420e-01	k: 8450	n:10000
KIAA1524   10000 perm   2 sec   (5767 perm/sec)   p_kst 8.450000e-01   p_cons 6.573000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000090/KIAA1524.7_2802_10000_0.845_0.6573_1.png
                gene_name: KIAA1524
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 21 percent done.
KIAA0226
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.216940e-01	ci left: 8.825186e-02	ci right 9.978590e-02	k: 939	n:10000
Cons ci ratio: 9.371625e-02	ci left: 1.418777e-01	ci right 1.559275e-01	k: 1488	n:10000
KS ci ratio: 1.257205e-01	ci left: 8.300372e-02	ci right 9.423727e-02	k: 885	n:10000
KIAA0226   10000 perm   2 sec   (6223 perm/sec)   p_kst 8.850000e-02   p_cons 1.488000e-01   p_joint 9.390000e-02

Joint ci ratio: 8.274106e-02	ci left: 9.670986e-02	ci right 1.051066e-01	k: 2017	n:20000
Cons ci ratio: 6.555871e-02	ci left: 1.466556e-01	ci right 1.566459e-01	k: 3032	n:20000
KS ci ratio: 8.931503e-02	ci left: 8.391296e-02	ci right 9.180734e-02	k: 1756	n:20000
KIAA0226   20000 perm   4 sec   (5487 perm/sec)   p_kst 8.780000e-02   p_cons 1.516000e-01   p_joint 1.008500e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0226.6_3048_20000_0.0878_0.1516_0.10085.png
                gene_name: KIAA0226
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.088 
        ci_ks_bounds_left: 0.084 
       ci_ks_bounds_right: 0.092 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.097 
    ci_joint_bounds_right: 0.11 

Current progress: 22 percent done.
KIAA0240
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.754707e-02	ci left: 8.256448e-01	ci right 8.403607e-01	k: 8331	n:10000
Cons ci ratio: 2.196797e-02	ci left: 7.525160e-01	ci right 7.693318e-01	k: 7610	n:10000
KS ci ratio: 2.725432e-02	ci left: 6.648137e-01	ci right 6.832848e-01	k: 6741	n:10000
KIAA0240   10000 perm   2 sec   (5740 perm/sec)   p_kst 6.741000e-01   p_cons 7.610000e-01   p_joint 8.331000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0240.6_3284_10000_0.6741_0.761_0.8331.png
                gene_name: KIAA0240
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 24 percent done.
KIAA0355
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.945480e-02	ci left: 6.295976e-01	ci right 6.485213e-01	k: 6391	n:10000
Cons ci ratio: 2.730395e-02	ci left: 6.640082e-01	ci right 6.824908e-01	k: 6733	n:10000
KS ci ratio: 3.977843e-02	ci left: 4.827546e-01	ci right 5.024497e-01	k: 4926	n:10000
KIAA0355   10000 perm   2 sec   (5526 perm/sec)   p_kst 4.926000e-01   p_cons 6.733000e-01   p_joint 6.391000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0355.6_3265_10000_0.4926_0.6733_0.6391.png
                gene_name: KIAA0355
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 25 percent done.
KIAA0467
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.566662e-02	ci left: 3.221743e-01	ci right 3.407240e-01	k: 3314	n:10000
Cons ci ratio: 1.472195e-01	ci left: 6.130724e-02	ci right 7.114729e-02	k: 661	n:10000
KS ci ratio: 2.468708e-02	ci left: 7.070498e-01	ci right 7.248243e-01	k: 7160	n:10000
KIAA0467   10000 perm   2 sec   (4553 perm/sec)   p_kst 7.160000e-01   p_cons 6.610000e-02   p_joint 3.314000e-01

Joint ci ratio: 5.010136e-02	ci left: 2.284438e-01	ci right 2.402335e-01	k: 4686	n:20000
Cons ci ratio: 1.073971e-01	ci left: 5.908656e-02	ci right 6.584133e-02	k: 1248	n:20000
KS ci ratio: 1.725094e-02	ci left: 7.145260e-01	ci right 7.270098e-01	k: 14416	n:20000
KIAA0467   20000 perm   5 sec   (4179 perm/sec)   p_kst 7.208000e-01   p_cons 6.240000e-02   p_joint 2.343000e-01

Joint ci ratio: 3.796111e-02	ci left: 2.572295e-01	ci right 2.672166e-01	k: 7866	n:30000
Cons ci ratio: 8.810456e-02	ci left: 5.916639e-02	ci right 6.465217e-02	k: 1856	n:30000
KS ci ratio: 1.402362e-02	ci left: 7.174621e-01	ci right 7.276281e-01	k: 21677	n:30000
KIAA0467   30000 perm   7 sec   (4009 perm/sec)   p_kst 7.225667e-01   p_cons 6.186667e-02   p_joint 2.622000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0467.5_7822_30000_0.72257_0.061867_0.2622.png
                gene_name: KIAA0467
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.062 
      ci_cons_bounds_left: 0.059 
     ci_cons_bounds_right: 0.065 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 27 percent done.
KIAA0802
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.900648e-02	ci left: 4.925508e-01	ci right 5.122478e-01	k: 5024	n:10000
Cons ci ratio: 3.764925e-02	ci left: 5.102534e-01	ci right 5.299348e-01	k: 5201	n:10000
KS ci ratio: 5.619830e-02	ci left: 3.180054e-01	ci right 3.364953e-01	k: 3272	n:10000
KIAA0802   10000 perm   2 sec   (4925 perm/sec)   p_kst 3.272000e-01   p_cons 5.201000e-01   p_joint 5.024000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0802.6_4817_10000_0.3272_0.5201_0.5024.png
                gene_name: KIAA0802
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 28 percent done.
KIAA1407
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.058452e-02	ci left: 2.860725e-01	ci right 3.040471e-01	k: 2950	n:10000
KS ci ratio: 1.970476e-02	ci left: 7.902989e-01	ci right 8.061270e-01	k: 7983	n:10000
KIAA1407   10000 perm   2 sec   (5532 perm/sec)   p_kst 7.983000e-01   p_cons 2.950000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000090/KIAA1407.6_2879_10000_0.7983_0.295_1.png
                gene_name: KIAA1407
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 30 percent done.
KIAA1432
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.268756e-02	ci left: 5.800845e-01	ci right 5.994631e-01	k: 5898	n:10000
Cons ci ratio: 4.449503e-02	ci left: 4.271481e-01	ci right 4.466887e-01	k: 4369	n:10000
KS ci ratio: 3.270783e-02	ci left: 5.797835e-01	ci right 5.991643e-01	k: 5895	n:10000
KIAA1432   10000 perm   2 sec   (5361 perm/sec)   p_kst 5.895000e-01   p_cons 4.369000e-01   p_joint 5.898000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA1432.6_4209_10000_0.5895_0.4369_0.5898.png
                gene_name: KIAA1432
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 31 percent done.
KIAA1462
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.626139e-03	ci left: 9.384828e-01	ci right 9.476569e-01	k: 9432	n:10000
Cons ci ratio: 4.308563e-02	ci left: 4.430089e-01	ci right 4.626186e-01	k: 4528	n:10000
KS ci ratio: 2.129725e-02	ci left: 7.637498e-01	ci right 7.802915e-01	k: 7721	n:10000
KIAA1462   10000 perm   2 sec   (5403 perm/sec)   p_kst 7.721000e-01   p_cons 4.528000e-01   p_joint 9.432000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA1462.6_4092_10000_0.7721_0.4528_0.9432.png
                gene_name: KIAA1462
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 33 percent done.
KIAA0100
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.272828e-02	ci left: 7.397735e-01	ci right 7.568816e-01	k: 7484	n:10000
KS ci ratio: 2.813948e-02	ci left: 6.505193e-01	ci right 6.691875e-01	k: 6599	n:10000
KIAA0100   10000 perm   2 sec   (4626 perm/sec)   p_kst 6.599000e-01   p_cons 7.484000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000090/KIAA0100.5_6864_10000_0.6599_0.7484_1.png
                gene_name: KIAA0100
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 34 percent done.
KIAA0319
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.616004e-02	ci left: 3.183032e-01	ci right 3.367974e-01	k: 3275	n:10000
Cons ci ratio: 1.132409e-01	ci left: 1.009091e-01	ci right 1.131209e-01	k: 1069	n:10000
KS ci ratio: 1.020487e-02	ci left: 9.316454e-01	ci right 9.412984e-01	k: 9366	n:10000
KIAA0319   10000 perm   2 sec   (4540 perm/sec)   p_kst 9.366000e-01   p_cons 1.069000e-01   p_joint 3.275000e-01

Joint ci ratio: 3.947352e-02	ci left: 3.236824e-01	ci right 3.367670e-01	k: 6604	n:20000
Cons ci ratio: 8.151112e-02	ci left: 9.940942e-02	ci right 1.079062e-01	k: 2072	n:20000
KS ci ratio: 7.073193e-03	ci left: 9.354913e-01	ci right 9.421804e-01	k: 18778	n:20000
KIAA0319   20000 perm   4 sec   (4686 perm/sec)   p_kst 9.389000e-01   p_cons 1.036000e-01   p_joint 3.302000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0319.5_3331_20000_0.9389_0.1036_0.3302.png
                gene_name: KIAA0319
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.099 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 36 percent done.
KIAA0513
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.244088e-02	ci left: 2.737893e-01	ci right 2.915374e-01	k: 2826	n:10000
Cons ci ratio: 5.959290e-03	ci left: 9.744004e-01	ci right 9.803170e-01	k: 9775	n:10000
KS ci ratio: 8.122612e-02	ci left: 1.811711e-01	ci right 1.966105e-01	k: 1888	n:10000
KIAA0513   10000 perm   2 sec   (5952 perm/sec)   p_kst 1.888000e-01   p_cons 9.775000e-01   p_joint 2.826000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0513.5_1284_10000_0.1888_0.9775_0.2826.png
                gene_name: KIAA0513
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 37 percent done.
KIAA0754
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.233755e-02	ci left: 5.853022e-01	ci right 6.046425e-01	k: 5950	n:10000
Cons ci ratio: 2.769573e-02	ci left: 6.576653e-01	ci right 6.762373e-01	k: 6670	n:10000
KS ci ratio: 5.834631e-02	ci left: 3.018342e-01	ci right 3.200760e-01	k: 3109	n:10000
KIAA0754   10000 perm   2 sec   (4846 perm/sec)   p_kst 3.109000e-01   p_cons 6.670000e-01   p_joint 5.950000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0754.5_4288_10000_0.3109_0.667_0.595.png
                gene_name: KIAA0754
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.60 

Current progress: 39 percent done.
KIAA1033
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.067067e-01	ci left: 1.125202e-01	ci right 1.253028e-01	k: 1188	n:10000
Cons ci ratio: 3.928043e-02	ci left: 4.890517e-01	ci right 5.087489e-01	k: 4989	n:10000
KS ci ratio: 1.414688e-01	ci left: 6.623521e-02	ci right 7.641622e-02	k: 712	n:10000
KIAA1033   10000 perm   2 sec   (5458 perm/sec)   p_kst 7.120000e-02   p_cons 4.989000e-01   p_joint 1.188000e-01

Joint ci ratio: 6.262714e-02	ci left: 1.586456e-01	ci right 1.689523e-01	k: 3275	n:20000
Cons ci ratio: 2.791956e-02	ci left: 4.893966e-01	ci right 5.033044e-01	k: 9927	n:20000
KS ci ratio: 9.996020e-02	ci left: 6.782007e-02	ci right 7.500514e-02	k: 1427	n:20000
KIAA1033   20000 perm   4 sec   (4925 perm/sec)   p_kst 7.135000e-02   p_cons 4.963500e-01   p_joint 1.637500e-01

Outputting figure to mutsig2_images.part000000000090/KIAA1033.5_3654_20000_0.07135_0.49635_0.16375.png
                gene_name: KIAA1033
               theta_stop: 0.100 
                    nperm: 20000 
                     p_ks: 0.071 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.075 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 40 percent done.
KIAA1244
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.405052e-02	ci left: 8.798130e-01	ci right 8.923611e-01	k: 8862	n:10000
Cons ci ratio: 4.406368e-02	ci left: 4.319352e-01	ci right 4.514988e-01	k: 4417	n:10000
KS ci ratio: 2.249299e-02	ci left: 7.437166e-01	ci right 7.607363e-01	k: 7523	n:10000
KIAA1244   10000 perm   2 sec   (4500 perm/sec)   p_kst 7.523000e-01   p_cons 4.417000e-01   p_joint 8.862000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA1244.5_6670_10000_0.7523_0.4417_0.8862.png
                gene_name: KIAA1244
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 42 percent done.
KIAA1429
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.167040e-02	ci left: 4.595787e-01	ci right 4.792392e-01	k: 4694	n:10000
Cons ci ratio: 5.799423e-02	ci left: 3.044128e-01	ci right 3.226959e-01	k: 3135	n:10000
KS ci ratio: 3.917062e-02	ci left: 4.904513e-01	ci right 5.101485e-01	k: 5003	n:10000
KIAA1429   10000 perm   2 sec   (4630 perm/sec)   p_kst 5.003000e-01   p_cons 3.135000e-01   p_joint 4.694000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA1429.5_5589_10000_0.5003_0.3135_0.4694.png
                gene_name: KIAA1429
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 43 percent done.
KIAA0182
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.417529e-02	ci left: 5.583228e-01	ci right 5.778375e-01	k: 5681	n:10000
Cons ci ratio: 9.691176e-02	ci left: 1.337444e-01	ci right 1.474657e-01	k: 1405	n:10000
KS ci ratio: 1.742710e-02	ci left: 8.275777e-01	ci right 8.422267e-01	k: 8350	n:10000
KIAA0182   10000 perm   2 sec   (5102 perm/sec)   p_kst 8.350000e-01   p_cons 1.405000e-01   p_joint 5.681000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0182.4_3718_10000_0.835_0.1405_0.5681.png
                gene_name: KIAA0182
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 45 percent done.
KIAA0232
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.842204e-02	ci left: 6.459913e-01	ci right 6.647181e-01	k: 6554	n:10000
Cons ci ratio: 2.426881e-02	ci left: 7.140138e-01	ci right 7.316562e-01	k: 7229	n:10000
KS ci ratio: 5.114064e-02	ci left: 3.605262e-01	ci right 3.795496e-01	k: 3700	n:10000
KIAA0232   10000 perm   2 sec   (5278 perm/sec)   p_kst 3.700000e-01   p_cons 7.229000e-01   p_joint 6.554000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0232.4_4220_10000_0.37_0.7229_0.6554.png
                gene_name: KIAA0232
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.66 

Current progress: 46 percent done.
KIAA0427
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.818335e-02	ci left: 3.030243e-01	ci right 3.212853e-01	k: 3121	n:10000
Cons ci ratio: 1.941074e-02	ci left: 7.951683e-01	ci right 8.108548e-01	k: 8031	n:10000
KS ci ratio: 9.913811e-02	ci left: 1.284572e-01	ci right 1.419561e-01	k: 1351	n:10000
KIAA0427   10000 perm   2 sec   (5820 perm/sec)   p_kst 1.351000e-01   p_cons 8.031000e-01   p_joint 3.121000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0427.4_1847_10000_0.1351_0.8031_0.3121.png
                gene_name: KIAA0427
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 48 percent done.
KIAA0430
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.909731e-02	ci left: 8.003440e-01	ci right 8.158761e-01	k: 8082	n:10000
Cons ci ratio: 4.002586e-02	ci left: 4.796566e-01	ci right 4.993495e-01	k: 4895	n:10000
KS ci ratio: 1.755337e-02	ci left: 8.255431e-01	ci right 8.402624e-01	k: 8330	n:10000
KIAA0430   10000 perm   2 sec   (5213 perm/sec)   p_kst 8.330000e-01   p_cons 4.895000e-01   p_joint 8.082000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0430.4_5336_10000_0.833_0.4895_0.8082.png
                gene_name: KIAA0430
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 49 percent done.
KIAA0564
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.566713e-02	ci left: 6.908102e-01	ci right 7.088733e-01	k: 6999	n:10000
Cons ci ratio: 6.267260e-02	ci left: 2.723040e-01	ci right 2.900236e-01	k: 2811	n:10000
KS ci ratio: 2.885105e-02	ci left: 6.391508e-01	ci right 6.579626e-01	k: 6486	n:10000
KIAA0564   10000 perm   2 sec   (5046 perm/sec)   p_kst 6.486000e-01   p_cons 2.811000e-01   p_joint 6.999000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0564.4_5902_10000_0.6486_0.2811_0.6999.png
                gene_name: KIAA0564
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 51 percent done.
KIAA0586
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.840317e-02	ci left: 6.462931e-01	ci right 6.650161e-01	k: 6557	n:10000
Cons ci ratio: 1.913424e-02	ci left: 7.997350e-01	ci right 8.152855e-01	k: 8076	n:10000
KS ci ratio: 3.719183e-02	ci left: 5.163572e-01	ci right 5.360275e-01	k: 5262	n:10000
KIAA0586   10000 perm   2 sec   (5417 perm/sec)   p_kst 5.262000e-01   p_cons 8.076000e-01   p_joint 6.557000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0586.4_4539_10000_0.5262_0.8076_0.6557.png
                gene_name: KIAA0586
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 52 percent done.
KIAA0649
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.784639e-02	ci left: 3.055038e-01	ci right 3.238042e-01	k: 3146	n:10000
Cons ci ratio: 8.023269e-02	ci left: 1.849114e-01	ci right 2.004680e-01	k: 1926	n:10000
KS ci ratio: 5.098745e-02	ci left: 3.619185e-01	ci right 3.809565e-01	k: 3714	n:10000
KIAA0649   10000 perm   2 sec   (5714 perm/sec)   p_kst 3.714000e-01   p_cons 1.926000e-01   p_joint 3.146000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0649.4_3634_10000_0.3714_0.1926_0.3146.png
                gene_name: KIAA0649
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 54 percent done.
KIAA0913
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.868751e-02	ci left: 3.836086e-01	ci right 4.028536e-01	k: 3932	n:10000
KS ci ratio: 3.116315e-02	ci left: 6.030707e-01	ci right 6.222637e-01	k: 6127	n:10000
KIAA0913   10000 perm   2 sec   (4863 perm/sec)   p_kst 6.127000e-01   p_cons 3.932000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000090/KIAA0913.4_5633_10000_0.6127_0.3932_1.png
                gene_name: KIAA0913
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 55 percent done.
KIAA1012
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.012086e-02	ci left: 2.296806e-01	ci right 2.464723e-01	k: 2380	n:10000
Cons ci ratio: 4.417103e-02	ci left: 4.307383e-01	ci right 4.502963e-01	k: 4405	n:10000
KS ci ratio: 1.092784e-01	ci left: 1.077365e-01	ci right 1.202894e-01	k: 1139	n:10000
KIAA1012   10000 perm   2 sec   (5069 perm/sec)   p_kst 1.139000e-01   p_cons 4.405000e-01   p_joint 2.380000e-01

Joint ci ratio: 7.520342e-02	ci left: 1.150842e-01	ci right 1.241267e-01	k: 2391	n:20000
Cons ci ratio: 3.097789e-02	ci left: 4.376966e-01	ci right 4.515195e-01	k: 8892	n:20000
KS ci ratio: 7.892335e-02	ci left: 1.054499e-01	ci right 1.141639e-01	k: 2195	n:20000
KIAA1012   20000 perm   4 sec   (4697 perm/sec)   p_kst 1.097500e-01   p_cons 4.446000e-01   p_joint 1.195500e-01

Outputting figure to mutsig2_images.part000000000090/KIAA1012.4_4424_20000_0.10975_0.4446_0.11955.png
                gene_name: KIAA1012
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 57 percent done.
KIAA1267
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.155646e-02	ci left: 9.146125e-01	ci right 9.253413e-01	k: 9201	n:10000
Cons ci ratio: 4.683115e-02	ci left: 4.022303e-01	ci right 4.216210e-01	k: 4119	n:10000
KS ci ratio: 3.126828e-02	ci left: 6.014639e-01	ci right 6.206713e-01	k: 6111	n:10000
KIAA1267   10000 perm   2 sec   (5621 perm/sec)   p_kst 6.111000e-01   p_cons 4.119000e-01   p_joint 9.201000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA1267.4_3374_10000_0.6111_0.4119_0.9201.png
                gene_name: KIAA1267
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.93 

Current progress: 58 percent done.
KIAA1467
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.712220e-01	ci left: 4.552219e-02	ci right 5.414247e-02	k: 497	n:10000
Cons ci ratio: 9.977908e-02	ci left: 1.269892e-01	ci right 1.404250e-01	k: 1336	n:10000
KS ci ratio: 1.187199e-01	ci left: 9.243507e-02	ci right 1.042001e-01	k: 982	n:10000
KIAA1467   10000 perm   2 sec   (6068 perm/sec)   p_kst 9.820000e-02   p_cons 1.336000e-01   p_joint 4.970000e-02

Joint ci ratio: 9.047721e-02	ci left: 8.190496e-02	ci right 8.971595e-02	k: 1715	n:20000
Cons ci ratio: 7.120254e-02	ci left: 1.268944e-01	ci right 1.363130e-01	k: 2631	n:20000
KS ci ratio: 8.474023e-02	ci left: 9.253972e-02	ci right 1.007780e-01	k: 1932	n:20000
KIAA1467   20000 perm   4 sec   (5510 perm/sec)   p_kst 9.660000e-02   p_cons 1.315500e-01   p_joint 8.575000e-02

Outputting figure to mutsig2_images.part000000000090/KIAA1467.4_1921_20000_0.0966_0.13155_0.08575.png
                gene_name: KIAA1467
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.097 
        ci_ks_bounds_left: 0.093 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.086 
     ci_joint_bounds_left: 0.082 
    ci_joint_bounds_right: 0.090 

Current progress: 60 percent done.
KHNYN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.218414e-02	ci left: 4.534885e-01	ci right 4.731329e-01	k: 4633	n:10000
Cons ci ratio: 1.834238e-02	ci left: 8.127337e-01	ci right 8.278793e-01	k: 8204	n:10000
KS ci ratio: 7.791142e-02	ci left: 1.940700e-01	ci right 2.099040e-01	k: 2019	n:10000
KHNYN   10000 perm   2 sec   (6325 perm/sec)   p_kst 2.019000e-01   p_cons 8.204000e-01   p_joint 4.633000e-01

Outputting figure to mutsig2_images.part000000000090/KHNYN.3_2065_10000_0.2019_0.8204_0.4633.png
                gene_name: KHNYN
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 61 percent done.
KIAA0146
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.677346e-02	ci left: 2.476661e-01	ci right 2.648761e-01	k: 2562	n:10000
Cons ci ratio: 8.051746e-02	ci left: 1.838286e-01	ci right 1.993515e-01	k: 1915	n:10000
KS ci ratio: 5.169352e-02	ci left: 3.555546e-01	ci right 3.745241e-01	k: 3650	n:10000
KIAA0146   10000 perm   2 sec   (5996 perm/sec)   p_kst 3.650000e-01   p_cons 1.915000e-01   p_joint 2.562000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0146.3_2828_10000_0.365_0.1915_0.2562.png
                gene_name: KIAA0146
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 63 percent done.
KIAA0195
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.705039e-02	ci left: 5.182587e-01	ci right 5.379249e-01	k: 5281	n:10000
Cons ci ratio: 4.803081e-02	ci left: 3.900798e-01	ci right 4.093787e-01	k: 3997	n:10000
KS ci ratio: 6.278129e-02	ci left: 2.716109e-01	ci right 2.893171e-01	k: 2804	n:10000
KIAA0195   10000 perm   2 sec   (5629 perm/sec)   p_kst 2.804000e-01   p_cons 3.997000e-01   p_joint 5.281000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0195.3_4195_10000_0.2804_0.3997_0.5281.png
                gene_name: KIAA0195
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 64 percent done.
KIAA0196
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.238453e-02	ci left: 5.845997e-01	ci right 6.039453e-01	k: 5943	n:10000
KS ci ratio: 3.256613e-02	ci left: 5.818905e-01	ci right 6.012561e-01	k: 5916	n:10000
KIAA0196   10000 perm   2 sec   (5719 perm/sec)   p_kst 5.916000e-01   p_cons 5.943000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000090/KIAA0196.3_3592_10000_0.5916_0.5943_1.png
                gene_name: KIAA0196
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 66 percent done.
KIAA0319L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.102633e-01	ci left: 1.059801e-01	ci right 1.184468e-01	k: 1121	n:10000
Cons ci ratio: 7.743137e-02	ci left: 1.960405e-01	ci right 2.119323e-01	k: 2039	n:10000
KS ci ratio: 9.412510e-02	ci left: 1.407993e-01	ci right 1.548065e-01	k: 1477	n:10000
KIAA0319L   10000 perm   2 sec   (5862 perm/sec)   p_kst 1.477000e-01   p_cons 2.039000e-01   p_joint 1.121000e-01

Joint ci ratio: 7.283658e-02	ci left: 1.218734e-01	ci right 1.311355e-01	k: 2529	n:20000
Cons ci ratio: 5.532413e-02	ci left: 1.950690e-01	ci right 2.062182e-01	k: 4012	n:20000
KS ci ratio: 6.560972e-02	ci left: 1.464583e-01	ci right 1.564432e-01	k: 3028	n:20000
KIAA0319L   20000 perm   4 sec   (5243 perm/sec)   p_kst 1.514000e-01   p_cons 2.006000e-01   p_joint 1.264500e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0319L.3_3230_20000_0.1514_0.2006_0.12645.png
                gene_name: KIAA0319L
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 67 percent done.
KIAA0415
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.933479e-03	ci left: 9.818827e-01	ci right 9.868293e-01	k: 9845	n:10000
Cons ci ratio: 3.137362e-02	ci left: 5.998573e-01	ci right 6.190789e-01	k: 6095	n:10000
KS ci ratio: 4.049311e-02	ci left: 4.738613e-01	ci right 4.935482e-01	k: 4837	n:10000
KIAA0415   10000 perm   2 sec   (6059 perm/sec)   p_kst 4.837000e-01   p_cons 6.095000e-01   p_joint 9.845000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0415.3_2492_10000_0.4837_0.6095_0.9845.png
                gene_name: KIAA0415
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 69 percent done.
KIAA0494
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.066371e-02	ci left: 4.717634e-01	ci right 4.914473e-01	k: 4816	n:10000
Cons ci ratio: 7.270890e-02	ci left: 2.169452e-01	ci right 2.334152e-01	k: 2251	n:10000
KS ci ratio: 4.354051e-02	ci left: 4.378206e-01	ci right 4.574099e-01	k: 4476	n:10000
KIAA0494   10000 perm   1 sec   (6972 perm/sec)   p_kst 4.476000e-01   p_cons 2.251000e-01   p_joint 4.816000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0494.3_1532_10000_0.4476_0.2251_0.4816.png
                gene_name: KIAA0494
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 70 percent done.
KIAA0562
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.249459e-02	ci left: 3.484968e-01	ci right 3.673860e-01	k: 3579	n:10000
Cons ci ratio: 9.302001e-02	ci left: 1.437406e-01	ci right 1.578635e-01	k: 1507	n:10000
KS ci ratio: 5.566662e-02	ci left: 3.221743e-01	ci right 3.407240e-01	k: 3314	n:10000
KIAA0562   10000 perm   2 sec   (6246 perm/sec)   p_kst 3.314000e-01   p_cons 1.507000e-01   p_joint 3.579000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0562.3_2862_10000_0.3314_0.1507_0.3579.png
                gene_name: KIAA0562
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 72 percent done.
KIAA0652
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.309272e-02	ci left: 1.435445e-01	ci right 1.576597e-01	k: 1505	n:10000
Cons ci ratio: 1.421012e-02	ci left: 8.774593e-01	ci right 8.901162e-01	k: 8839	n:10000
KS ci ratio: 1.382589e-01	ci left: 6.923436e-02	ci right 7.961519e-02	k: 743	n:10000
KIAA0652   10000 perm   2 sec   (6249 perm/sec)   p_kst 7.430000e-02   p_cons 8.839000e-01   p_joint 1.505000e-01

Joint ci ratio: 9.699335e-02	ci left: 7.182651e-02	ci right 7.919747e-02	k: 1509	n:20000
Cons ci ratio: 9.985684e-03	ci left: 8.806501e-01	ci right 8.895376e-01	k: 17703	n:20000
KS ci ratio: 9.699335e-02	ci left: 7.182651e-02	ci right 7.919747e-02	k: 1509	n:20000
KIAA0652   20000 perm   4 sec   (5659 perm/sec)   p_kst 7.545000e-02   p_cons 8.851500e-01   p_joint 7.545000e-02

Outputting figure to mutsig2_images.part000000000090/KIAA0652.3_1618_20000_0.07545_0.88515_0.07545.png
                gene_name: KIAA0652
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.075 
        ci_ks_bounds_left: 0.072 
       ci_ks_bounds_right: 0.079 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.075 
     ci_joint_bounds_left: 0.072 
    ci_joint_bounds_right: 0.079 

Current progress: 73 percent done.
KIAA0664
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.392529e-02	ci left: 5.619317e-01	ci right 5.814265e-01	k: 5717	n:10000
Cons ci ratio: 6.465227e-02	ci left: 2.600302e-01	ci right 2.775047e-01	k: 2687	n:10000
KS ci ratio: 4.477642e-02	ci left: 4.240569e-01	ci right 4.435817e-01	k: 4338	n:10000
KIAA0664   10000 perm   2 sec   (5388 perm/sec)   p_kst 4.338000e-01   p_cons 2.687000e-01   p_joint 5.717000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0664.3_4030_10000_0.4338_0.2687_0.5717.png
                gene_name: KIAA0664
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 75 percent done.
KIAA0776
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.747765e-02	ci left: 8.267638e-01	ci right 8.414410e-01	k: 8342	n:10000
KS ci ratio: 7.419256e-03	ci left: 9.617346e-01	ci right 9.689910e-01	k: 9655	n:10000
KIAA0776   10000 perm   2 sec   (5452 perm/sec)   p_kst 9.655000e-01   p_cons 8.342000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000090/KIAA0776.3_2461_10000_0.9655_0.8342_1.png
                gene_name: KIAA0776
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
KIAA0831
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.422738e-02	ci left: 2.626030e-01	ci right 2.801304e-01	k: 2713	n:10000
Cons ci ratio: 1.093867e-01	ci left: 1.075413e-01	ci right 1.200846e-01	k: 1137	n:10000
KS ci ratio: 3.559658e-02	ci left: 5.381826e-01	ci right 5.577894e-01	k: 5480	n:10000
KIAA0831   10000 perm   1 sec   (6667 perm/sec)   p_kst 5.480000e-01   p_cons 1.137000e-01   p_joint 2.713000e-01

Joint ci ratio: 3.603797e-02	ci left: 3.649467e-01	ci right 3.783906e-01	k: 7433	n:20000
Cons ci ratio: 7.763852e-02	ci left: 1.086438e-01	ci right 1.174690e-01	k: 2260	n:20000
KS ci ratio: 2.502018e-02	ci left: 5.440746e-01	ci right 5.579105e-01	k: 11020	n:20000
KIAA0831   20000 perm   3 sec   (5993 perm/sec)   p_kst 5.510000e-01   p_cons 1.130000e-01   p_joint 3.716500e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0831.3_1519_20000_0.551_0.113_0.37165.png
                gene_name: KIAA0831
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 78 percent done.
KIAA0907
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.837348e-02	ci left: 8.122256e-01	ci right 8.273876e-01	k: 8199	n:10000
KS ci ratio: 9.679838e-03	ci left: 9.378606e-01	ci right 9.470795e-01	k: 9426	n:10000
KIAA0907   10000 perm   2 sec   (6507 perm/sec)   p_kst 9.426000e-01   p_cons 8.199000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000090/KIAA0907.3_1901_10000_0.9426_0.8199_1.png
                gene_name: KIAA0907
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
KIAA0922
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.876129e-02	ci left: 1.559077e-01	ci right 1.704891e-01	k: 1631	n:10000
Cons ci ratio: 1.712220e-01	ci left: 4.552219e-02	ci right 5.414247e-02	k: 497	n:10000
KS ci ratio: 2.076422e-02	ci left: 7.726617e-01	ci right 7.889744e-01	k: 7809	n:10000
KIAA0922   10000 perm   2 sec   (5457 perm/sec)   p_kst 7.809000e-01   p_cons 4.970000e-02   p_joint 1.631000e-01

Joint ci ratio: 6.531773e-02	ci left: 1.475927e-01	ci right 1.576085e-01	k: 3051	n:20000
Cons ci ratio: 1.195048e-01	ci left: 4.799150e-02	ci right 5.413986e-02	k: 1020	n:20000
KS ci ratio: 1.473389e-02	ci left: 7.738907e-01	ci right 7.854279e-01	k: 15594	n:20000
KIAA0922   20000 perm   4 sec   (4912 perm/sec)   p_kst 7.797000e-01   p_cons 5.100000e-02   p_joint 1.525500e-01

Joint ci ratio: 4.784638e-02	ci left: 1.784406e-01	ci right 1.872209e-01	k: 5484	n:30000
Cons ci ratio: 9.752563e-02	ci left: 4.860257e-02	ci right 5.361815e-02	k: 1532	n:30000
KS ci ratio: 1.208498e-02	ci left: 7.733881e-01	ci right 7.828247e-01	k: 23344	n:30000
KIAA0922   30000 perm   6 sec   (4720 perm/sec)   p_kst 7.781333e-01   p_cons 5.106667e-02   p_joint 1.828000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0922.3_4973_30000_0.77813_0.051067_0.1828.png
                gene_name: KIAA0922
               theta_stop: 0.098 
                    nperm: 30000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.051 
      ci_cons_bounds_left: 0.049 
     ci_cons_bounds_right: 0.054 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 81 percent done.
KIAA1257
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.859077e-02	ci left: 8.086701e-01	ci right 8.239452e-01	k: 8164	n:10000
Cons ci ratio: 3.507522e-02	ci left: 5.454954e-01	ci right 5.650724e-01	k: 5553	n:10000
KS ci ratio: 2.898406e-02	ci left: 6.370387e-01	ci right 6.558759e-01	k: 6465	n:10000
KIAA1257   10000 perm   1 sec   (6744 perm/sec)   p_kst 6.465000e-01   p_cons 5.553000e-01   p_joint 8.164000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA1257.3_1258_10000_0.6465_0.5553_0.8164.png
                gene_name: KIAA1257
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 82 percent done.
KIAA1274
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.922911e-01	ci left: 4.756711e-03	ci right 7.941167e-03	k: 62	n:10000
Cons ci ratio: 7.570976e-02	ci left: 2.033338e-01	ci right 2.194347e-01	k: 2113	n:10000
KS ci ratio: 5.270911e-01	ci left: 4.059173e-03	ci right 7.040026e-03	k: 54	n:10000
KIAA1274   10000 perm   2 sec   (6307 perm/sec)   p_kst 5.400000e-03   p_cons 2.113000e-01   p_joint 6.200000e-03

Joint ci ratio: 2.089046e-01	ci left: 1.549097e-02	ci right 1.915129e-02	k: 345	n:20000
Cons ci ratio: 5.394834e-02	ci left: 2.031846e-01	ci right 2.145002e-01	k: 4176	n:20000
KS ci ratio: 3.523572e-01	ci left: 5.068179e-03	ci right 7.279094e-03	k: 122	n:20000
KIAA1274   20000 perm   4 sec   (5573 perm/sec)   p_kst 6.100000e-03   p_cons 2.088000e-01   p_joint 1.725000e-02

Joint ci ratio: 1.653015e-01	ci left: 1.687736e-02	ci right 1.995025e-02	k: 551	n:30000
Cons ci ratio: 4.556309e-02	ci left: 1.933713e-01	ci right 2.024206e-01	k: 5936	n:30000
KS ci ratio: 2.912969e-01	ci left: 5.126645e-03	ci right 6.904401e-03	k: 179	n:30000
KIAA1274   30000 perm   6 sec   (5315 perm/sec)   p_kst 5.966667e-03   p_cons 1.978667e-01   p_joint 1.836667e-02

Joint ci ratio: 1.444611e-01	ci left: 1.676790e-02	ci right 1.940272e-02	k: 722	n:40000
Cons ci ratio: 3.934427e-02	ci left: 1.948984e-01	ci right 2.027454e-01	k: 7952	n:40000
KS ci ratio: 2.486493e-01	ci left: 5.407373e-03	ci right 6.965625e-03	k: 246	n:40000
KIAA1274   40000 perm   8 sec   (5169 perm/sec)   p_kst 6.150000e-03   p_cons 1.988000e-01   p_joint 1.805000e-02

Joint ci ratio: 9.711020e-02	ci left: 3.002533e-02	ci right 3.310937e-02	k: 1577	n:50000
Cons ci ratio: 3.409026e-02	ci left: 2.055623e-01	ci right 2.127115e-01	k: 10456	n:50000
KS ci ratio: 2.157326e-01	ci left: 5.852246e-03	ci right 7.285946e-03	k: 327	n:50000
KIAA1274   50000 perm   10 sec   (5038 perm/sec)   p_kst 6.540000e-03   p_cons 2.091200e-01   p_joint 3.154000e-02

Joint ci ratio: 8.771136e-02	ci left: 3.080181e-02	ci right 3.364367e-02	k: 1932	n:60000
Cons ci ratio: 3.118351e-02	ci left: 2.052056e-01	ci right 2.117226e-01	k: 12507	n:60000
KS ci ratio: 1.953440e-01	ci left: 6.015290e-03	ci right 7.333110e-03	k: 399	n:60000
KIAA1274   60000 perm   12 sec   (4922 perm/sec)   p_kst 6.650000e-03   p_cons 2.084500e-01   p_joint 3.220000e-02

Joint ci ratio: 7.584574e-02	ci left: 3.536128e-02	ci right 3.816300e-02	k: 2572	n:70000
Cons ci ratio: 2.887492e-02	ci left: 2.053961e-01	ci right 2.114281e-01	k: 14588	n:70000
KS ci ratio: 1.839887e-01	ci left: 5.849915e-03	ci right 7.048692e-03	k: 450	n:70000
KIAA1274   70000 perm   15 sec   (4817 perm/sec)   p_kst 6.428571e-03   p_cons 2.084000e-01   p_joint 3.674286e-02

Joint ci ratio: 9.442736e-02	ci left: 2.009083e-02	ci right 2.209411e-02	k: 1686	n:80000
Cons ci ratio: 2.781851e-02	ci left: 1.960765e-01	ci right 2.016204e-01	k: 15907	n:80000
KS ci ratio: 1.730253e-01	ci left: 5.823239e-03	ci right 6.938014e-03	k: 509	n:80000
KIAA1274   80000 perm   17 sec   (4720 perm/sec)   p_kst 6.362500e-03   p_cons 1.988375e-01   p_joint 2.107500e-02

Joint ci ratio: 7.166091e-02	ci left: 3.102347e-02	ci right 3.334014e-02	k: 2895	n:90000
Cons ci ratio: 2.611331e-02	ci left: 1.976230e-01	ci right 2.028630e-01	k: 18021	n:90000
KS ci ratio: 1.626669e-01	ci left: 5.889423e-03	ci right 6.942771e-03	k: 576	n:90000
KIAA1274   90000 perm   19 sec   (4630 perm/sec)   p_kst 6.400000e-03   p_cons 2.002333e-01   p_joint 3.216667e-02

Joint ci ratio: 7.158927e-02	ci left: 2.806688e-02	ci right 3.016055e-02	k: 2910	n:100000
Cons ci ratio: 2.479142e-02	ci left: 1.975245e-01	ci right 2.024929e-01	k: 20000	n:100000
KS ci ratio: 1.528990e-01	ci left: 6.030527e-03	ci right 7.038416e-03	k: 652	n:100000
KIAA1274   100000 perm   22 sec   (4538 perm/sec)   p_kst 6.520000e-03   p_cons 2.000000e-01   p_joint 2.910000e-02

Joint ci ratio: 7.191551e-02	ci left: 2.535335e-02	ci right 2.725355e-02	k: 2892	n:110000
Cons ci ratio: 2.367476e-02	ci left: 1.971418e-01	ci right 2.018740e-01	k: 21945	n:110000
KS ci ratio: 1.464313e-01	ci left: 5.998573e-03	ci right 6.955000e-03	k: 711	n:110000
KIAA1274   110000 perm   25 sec   (4438 perm/sec)   p_kst 6.463636e-03   p_cons 1.995000e-01   p_joint 2.629091e-02

Joint ci ratio: 8.073575e-02	ci left: 1.848822e-02	ci right 2.005180e-02	k: 2311	n:120000
Cons ci ratio: 2.264506e-02	ci left: 1.975491e-01	ci right 2.020821e-01	k: 23977	n:120000
KS ci ratio: 1.405372e-01	ci left: 5.988778e-03	ci right 6.901987e-03	k: 772	n:120000
KIAA1274   120000 perm   28 sec   (4343 perm/sec)   p_kst 6.433333e-03   p_cons 1.998083e-01   p_joint 1.925833e-02

Joint ci ratio: 6.646279e-02	ci left: 2.519466e-02	ci right 2.693426e-02	k: 3387	n:130000
Cons ci ratio: 2.178086e-02	ci left: 1.972846e-01	ci right 2.016365e-01	k: 25929	n:130000
KS ci ratio: 1.338557e-01	ci left: 6.114971e-03	ci right 6.999564e-03	k: 851	n:130000
KIAA1274   130000 perm   30 sec   (4278 perm/sec)   p_kst 6.546154e-03   p_cons 1.994538e-01   p_joint 2.605385e-02

Joint ci ratio: 6.971324e-02	ci left: 2.131521e-02	ci right 2.286181e-02	k: 3091	n:140000
Cons ci ratio: 2.100765e-02	ci left: 1.970750e-01	ci right 2.012661e-01	k: 27883	n:140000
KS ci ratio: 1.287424e-01	ci left: 6.154867e-03	ci right 7.008620e-03	k: 920	n:140000
KIAA1274   140000 perm   33 sec   (4187 perm/sec)   p_kst 6.571429e-03   p_cons 1.991643e-01   p_joint 2.207857e-02

Joint ci ratio: 6.489616e-02	ci left: 2.297547e-02	ci right 2.452302e-02	k: 3561	n:150000
Cons ci ratio: 2.031516e-02	ci left: 1.968360e-01	ci right 2.008824e-01	k: 29828	n:150000
KS ci ratio: 1.237965e-01	ci left: 6.228766e-03	ci right 7.057144e-03	k: 995	n:150000
KIAA1274   150000 perm   36 sec   (4121 perm/sec)   p_kst 6.633333e-03   p_cons 1.988533e-01   p_joint 2.374000e-02

Joint ci ratio: 6.398743e-02	ci left: 2.218488e-02	ci right 2.365748e-02	k: 3666	n:160000
Cons ci ratio: 1.968768e-02	ci left: 1.966164e-01	ci right 2.005320e-01	k: 31771	n:160000
KS ci ratio: 1.198314e-01	ci left: 6.245463e-03	ci right 7.047571e-03	k: 1062	n:160000
KIAA1274   160000 perm   39 sec   (4063 perm/sec)   p_kst 6.637500e-03   p_cons 1.985687e-01   p_joint 2.291250e-02

Joint ci ratio: 6.355493e-02	ci left: 2.119212e-02	ci right 2.258895e-02	k: 3720	n:170000
Cons ci ratio: 1.911496e-02	ci left: 1.964244e-01	ci right 2.002211e-01	k: 33714	n:170000
KS ci ratio: 1.161210e-01	ci left: 6.271993e-03	ci right 7.050857e-03	k: 1131	n:170000
KIAA1274   170000 perm   43 sec   (3999 perm/sec)   p_kst 6.652941e-03   p_cons 1.983176e-01   p_joint 2.188235e-02

Joint ci ratio: 6.467653e-02	ci left: 1.935274e-02	ci right 2.065167e-02	k: 3599	n:180000
Cons ci ratio: 1.859663e-02	ci left: 1.961335e-01	ci right 1.998207e-01	k: 35635	n:180000
KS ci ratio: 1.130198e-01	ci left: 6.263518e-03	ci right 7.019170e-03	k: 1194	n:180000
KIAA1274   180000 perm   46 sec   (3945 perm/sec)   p_kst 6.633333e-03   p_cons 1.979722e-01   p_joint 1.999444e-02

Joint ci ratio: 6.935231e-02	ci left: 1.596300e-02	ci right 1.711498e-02	k: 3141	n:190000
Cons ci ratio: 1.810176e-02	ci left: 1.961630e-01	ci right 1.997515e-01	k: 37611	n:190000
KS ci ratio: 1.100225e-01	ci left: 6.271540e-03	ci right 7.006793e-03	k: 1260	n:190000
KIAA1274   190000 perm   49 sec   (3894 perm/sec)   p_kst 6.631579e-03   p_cons 1.979526e-01   p_joint 1.653158e-02

Joint ci ratio: 7.516955e-02	ci left: 1.291046e-02	ci right 1.392371e-02	k: 2682	n:200000
Cons ci ratio: 1.765219e-02	ci left: 1.960511e-01	ci right 1.995476e-01	k: 39559	n:200000
KS ci ratio: 1.073331e-01	ci left: 6.269264e-03	ci right 6.985149e-03	k: 1324	n:200000
KIAA1274   200000 perm   52 sec   (3841 perm/sec)   p_kst 6.620000e-03   p_cons 1.977950e-01   p_joint 1.341000e-02

Joint ci ratio: 7.474367e-02	ci left: 1.244509e-02	ci right 1.341604e-02	k: 2714	n:210000
Cons ci ratio: 1.722730e-02	ci left: 1.960839e-01	ci right 1.994959e-01	k: 41535	n:210000
KS ci ratio: 1.046046e-01	ci left: 6.295231e-03	ci right 6.994682e-03	k: 1394	n:210000
KIAA1274   210000 perm   55 sec   (3786 perm/sec)   p_kst 6.638095e-03   p_cons 1.977857e-01   p_joint 1.292381e-02

Joint ci ratio: 7.305495e-02	ci left: 1.244601e-02	ci right 1.339416e-02	k: 2841	n:220000
Cons ci ratio: 1.682396e-02	ci left: 1.962595e-01	ci right 1.995939e-01	k: 43543	n:220000
KS ci ratio: 1.019341e-01	ci left: 6.336767e-03	ci right 7.021783e-03	k: 1468	n:220000
KIAA1274   220000 perm   59 sec   (3739 perm/sec)   p_kst 6.672727e-03   p_cons 1.979227e-01   p_joint 1.291364e-02

Joint ci ratio: 7.450902e-02	ci left: 1.144802e-02	ci right 1.233825e-02	k: 2734	n:230000
Cons ci ratio: 1.645355e-02	ci left: 1.963081e-01	ci right 1.995691e-01	k: 45525	n:230000
KS ci ratio: 9.949064e-02	ci left: 6.370658e-03	ci right 7.041865e-03	k: 1541	n:230000
KIAA1274   230000 perm   62 sec   (3689 perm/sec)   p_kst 6.700000e-03   p_cons 1.979348e-01   p_joint 1.188696e-02

Outputting figure to mutsig2_images.part000000000090/KIAA1274.3_2647_230000_0.0067_0.19793_0.011887.png
                gene_name: KIAA1274
               theta_stop: 0.099 
                    nperm: 230000 
                     p_ks: 0.0067 
        ci_ks_bounds_left: 0.0064 
       ci_ks_bounds_right: 0.0070 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.012 
     ci_joint_bounds_left: 0.011 
    ci_joint_bounds_right: 0.012 

Current progress: 84 percent done.
KIAA1279
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.116972e-02	ci left: 6.029702e-01	ci right 6.221641e-01	k: 6126	n:10000
KS ci ratio: 4.652901e-03	ci left: 9.837165e-01	ci right 9.883940e-01	k: 9862	n:10000
KIAA1279   10000 perm   2 sec   (6548 perm/sec)   p_kst 9.862000e-01   p_cons 6.126000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000090/KIAA1279.3_1894_10000_0.9862_0.6126_1.png
                gene_name: KIAA1279
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 85 percent done.
KIAA1324L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.776877e-02	ci left: 2.421299e-01	ci right 2.592155e-01	k: 2506	n:10000
Cons ci ratio: 2.239646e-02	ci left: 7.453345e-01	ci right 7.623174e-01	k: 7539	n:10000
KS ci ratio: 1.463924e-01	ci left: 6.198316e-02	ci right 7.187095e-02	k: 668	n:10000
KIAA1324L   10000 perm   2 sec   (5675 perm/sec)   p_kst 6.680000e-02   p_cons 7.539000e-01   p_joint 2.506000e-01

Joint ci ratio: 5.627305e-02	ci left: 1.897265e-01	ci right 2.007622e-01	k: 3904	n:20000
Cons ci ratio: 1.564047e-02	ci left: 7.525061e-01	ci right 7.644187e-01	k: 15170	n:20000
KS ci ratio: 1.052995e-01	ci left: 6.137797e-02	ci right 6.824922e-02	k: 1295	n:20000
KIAA1324L   20000 perm   4 sec   (5149 perm/sec)   p_kst 6.475000e-02   p_cons 7.585000e-01   p_joint 1.952000e-01

Joint ci ratio: 5.667450e-02	ci left: 1.336217e-01	ci right 1.414487e-01	k: 4125	n:30000
Cons ci ratio: 1.277041e-02	ci left: 7.536153e-01	ci right 7.633346e-01	k: 22755	n:30000
KS ci ratio: 8.659821e-02	ci left: 6.115809e-02	ci right 6.672672e-02	k: 1917	n:30000
KIAA1324L   30000 perm   6 sec   (4920 perm/sec)   p_kst 6.390000e-02   p_cons 7.585000e-01   p_joint 1.375000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA1324L.3_3178_30000_0.0639_0.7585_0.1375.png
                gene_name: KIAA1324L
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.064 
        ci_ks_bounds_left: 0.061 
       ci_ks_bounds_right: 0.067 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 87 percent done.
KIAA0141
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.154075e-02	ci left: 9.148185e-01	ci right 9.255352e-01	k: 9203	n:10000
Cons ci ratio: 5.871592e-02	ci left: 2.991568e-01	ci right 3.173550e-01	k: 3082	n:10000
KS ci ratio: 2.199211e-02	ci left: 7.521113e-01	ci right 7.689367e-01	k: 7606	n:10000
KIAA0141   10000 perm   2 sec   (6664 perm/sec)   p_kst 7.606000e-01   p_cons 3.082000e-01   p_joint 9.203000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0141.2_1596_10000_0.7606_0.3082_0.9203.png
                gene_name: KIAA0141
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.93 

Current progress: 88 percent done.
KIAA0284
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.654243e-02	ci left: 4.052191e-01	ci right 4.246305e-01	k: 4149	n:10000
Cons ci ratio: 4.652327e-02	ci left: 4.054184e-01	ci right 4.248311e-01	k: 4151	n:10000
KS ci ratio: 4.886136e-02	ci left: 3.819165e-01	ci right 4.011468e-01	k: 3915	n:10000
KIAA0284   10000 perm   2 sec   (5702 perm/sec)   p_kst 3.915000e-01   p_cons 4.151000e-01   p_joint 4.149000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0284.2_4737_10000_0.3915_0.4151_0.4149.png
                gene_name: KIAA0284
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.42 

Current progress: 90 percent done.
KIAA0317
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.641285e-03	ci left: 9.768488e-01	ci right 9.824669e-01	k: 9798	n:10000
Cons ci ratio: 4.487681e-02	ci left: 4.229601e-01	ci right 4.424791e-01	k: 4327	n:10000
KS ci ratio: 4.503252e-02	ci left: 4.212652e-01	ci right 4.407750e-01	k: 4310	n:10000
KIAA0317   10000 perm   2 sec   (6441 perm/sec)   p_kst 4.310000e-01   p_cons 4.327000e-01   p_joint 9.798000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0317.2_2544_10000_0.431_0.4327_0.9798.png
                gene_name: KIAA0317
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 91 percent done.
KIAA0406
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.719929e-02	ci left: 5.162571e-01	ci right 5.359277e-01	k: 5261	n:10000
Cons ci ratio: 5.900626e-02	ci left: 2.970746e-01	ci right 3.152384e-01	k: 3061	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
KIAA0406   10000 perm   2 sec   (6250 perm/sec)   p_kst 1   p_cons 3.061000e-01   p_joint 5.261000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0406.2_3298_10000_1_0.3061_0.5261.png
                gene_name: KIAA0406
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 93 percent done.
KIAA0895
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.162697e-02	ci left: 9.136856e-01	ci right 9.244688e-01	k: 9192	n:10000
Cons ci ratio: 6.853489e-02	ci left: 2.379790e-01	ci right 2.549689e-01	k: 2464	n:10000
KS ci ratio: 6.563685e-02	ci left: 2.541932e-01	ci right 2.715451e-01	k: 2628	n:10000
KIAA0895   10000 perm   2 sec   (6409 perm/sec)   p_kst 2.628000e-01   p_cons 2.464000e-01   p_joint 9.192000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0895.2_1620_10000_0.2628_0.2464_0.9192.png
                gene_name: KIAA0895
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 94 percent done.
KIAA0895L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.689535e-02	ci left: 6.706551e-01	ci right 6.890400e-01	k: 6799	n:10000
KS ci ratio: 6.259518e-02	ci left: 2.727991e-01	ci right 2.905282e-01	k: 2816	n:10000
KIAA0895L   10000 perm   1 sec   (7101 perm/sec)   p_kst 2.816000e-01   p_cons 6.799000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000090/KIAA0895L.2_1440_10000_0.2816_0.6799_1.png
                gene_name: KIAA0895L
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
KIAA1370
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.181702e-02	ci left: 7.550454e-01	ci right 7.718009e-01	k: 7635	n:10000
Cons ci ratio: 3.143955e-02	ci left: 5.988532e-01	ci right 6.180835e-01	k: 6085	n:10000
KS ci ratio: 3.109098e-02	ci left: 6.041754e-01	ci right 6.233583e-01	k: 6138	n:10000
KIAA1370   10000 perm   2 sec   (6007 perm/sec)   p_kst 6.138000e-01   p_cons 6.085000e-01   p_joint 7.635000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA1370.2_3279_10000_0.6138_0.6085_0.7635.png
                gene_name: KIAA1370
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 97 percent done.
KIAA1383
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.114718e-02	ci left: 4.658700e-01	ci right 4.855441e-01	k: 4757	n:10000
Cons ci ratio: 3.978639e-02	ci left: 4.826547e-01	ci right 5.023497e-01	k: 4925	n:10000
KS ci ratio: 8.585446e-02	ci left: 1.650429e-01	ci right 1.799484e-01	k: 1724	n:10000
KIAA1383   10000 perm   2 sec   (6079 perm/sec)   p_kst 1.724000e-01   p_cons 4.925000e-01   p_joint 4.757000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA1383.2_3148_10000_0.1724_0.4925_0.4757.png
                gene_name: KIAA1383
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 99 percent done.
KIAA1522
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.297280e-02	ci left: 4.443061e-01	ci right 4.639206e-01	k: 4541	n:10000
Cons ci ratio: 7.894895e-03	ci left: 9.571236e-01	ci right 9.648049e-01	k: 9611	n:10000
KS ci ratio: 5.466463e-02	ci left: 3.302166e-01	ci right 3.488769e-01	k: 3395	n:10000
KIAA1522   10000 perm   2 sec   (6127 perm/sec)   p_kst 3.395000e-01   p_cons 9.611000e-01   p_joint 4.541000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA1522.2_3313_10000_0.3395_0.9611_0.4541.png
                gene_name: KIAA1522
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000090
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 90 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1729>
Subject: Job 8004203: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1729>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000091> was used as the working directory.
Started at Sun Nov 11 15:07:10 2012
Results reported at Sun Nov 11 15:40:29 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000091.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000091.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 91  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000091.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   2024.76 sec.
    Max Memory :      4754 MB
    Max Swap   :      7083 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
91
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 91
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 91: processing genes 8143 - 8233
Calculating significance of each gene.
Using projection method.
8143	KIAA1529	6.808285e-01
8144	KIAA1530	9.698761e-01
8145	KIAA1539	5.782272e-01
8146	KIAA1543	9.830037e-01
8147	KIAA1549	9.988952e-01
8148	KIAA1586	5.084217e-01
8149	KIAA1598	7.978511e-01
8150	KIAA1609	2.512411e-01
8151	KIAA1614	9.608681e-01
8152	KIAA1632	9.994948e-01
8153	KIAA1644	1
8154	KIAA1683	7.289124e-01
8155	KIAA1704	1
8156	KIAA1712	6.906868e-01
8157	KIAA1715	6.421662e-01
8158	KIAA1737	2.818706e-01
8159	KIAA1751	3.729998e-01
8160	KIAA1755	2.476092e-01
8161	KIAA1797	9.977132e-01
8162	KIAA1804	3.858085e-01
8163	KIAA1826	1.152559e-01
8164	KIAA1841	1.178789e-01
8165	KIAA1919	6.535708e-01
8166	KIAA1949	8.643405e-01
8167	KIAA1958	3.292479e-01
8168	KIAA1967	9.300914e-01
8169	KIAA1984	6.956338e-01
8170	KIAA2013	8.913080e-01
8171	KIAA2018	5.778619e-01
8172	KIAA2022	3.676518e-01
8173	KIAA2026	7.877305e-01
8174	KIDINS220	9.979457e-01
8175	KIF11	9.134245e-01
8176	KIF12	1
8177	KIF13A	1
8178	KIF13B	6.111471e-01
8179	KIF14	8.332370e-01
8180	KIF15	1
8181	KIF16B	3.788573e-01
8182	KIF17	1
8183	KIF18A	5.567725e-01
8184	KIF18B	8.836622e-01
8185	KIF19	8.252907e-01
8186	KIF1A	1
8187	KIF1B	9.780184e-01
8188	KIF1C	8.758680e-01
8189	KIF20A	5.240428e-01
8190	KIF20B	1
8191	KIF21A	1
8192	KIF21B	6.098192e-01
8193	KIF22	7.226647e-01
8194	KIF23	9.539744e-01
8195	KIF24	7.676306e-01
8196	KIF25	3.923157e-01
8197	KIF26B	9.921557e-01
8198	KIF27	9.792101e-01
8199	KIF2A	4.762802e-01
8200	KIF2B	8.435609e-01
8201	KIF2C	3.105749e-01
8202	KIF3A	6.987177e-01
8203	KIF3B	7.598045e-01
8204	KIF3C	1
8205	KIF4A	9.172037e-01
8206	KIF4B	8.883905e-01
8207	KIF5A	1.446842e-02
8208	KIF5B	1
8209	KIF5C	8.878357e-01
8210	KIF6	5.332290e-01
8211	KIF7	7.483723e-01
8212	KIF9	3.856169e-01
8213	KIFAP3	6.761800e-01
8214	KIFC1	7.860665e-01
8215	KIFC2	6.748450e-01
8216	KIFC3	1
8217	KIN	1
8218	KIR2DL1	3.439936e-01
8219	KIR2DL3	5.231280e-02
8220	KIR2DL4	6.629546e-01
8221	KIR2DS4	8.579140e-02
8222	KIR3DL1	4.069084e-02
8223	KIR3DL2	4.975644e-01
8224	KIR3DL3	6.673524e-01
8225	KIR3DP1	1
8226	KIRREL	5.363230e-01
8227	KIRREL2	7.500426e-04
8228	KIRREL3	1
8229	KISS1	3.298134e-01
8230	KIT	7.651527e-01
8231	KITLG	1
8232	KL	2.359081e-01
8233	KLB	3.560505e-01
Done

Running MutSig 2:
Scatter job 91: processing genes 8143 - 8233
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
KIF2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.063679e-02	ci left: 7.747892e-01	ci right 7.910457e-01	k: 7830	n:10000
Cons ci ratio: 3.513206e-02	ci left: 5.446939e-01	ci right 5.642744e-01	k: 5545	n:10000
KS ci ratio: 4.237119e-02	ci left: 4.512924e-01	ci right 4.709303e-01	k: 4611	n:10000
KIF2B   10000 perm   2 sec   (5388 perm/sec)   p_kst 4.611000e-01   p_cons 5.545000e-01   p_joint 7.830000e-01

Outputting figure to mutsig2_images.part000000000091/KIF2B.17_2026_10000_0.4611_0.5545_0.783.png
                gene_name: KIF2B
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 1 percent done.
KIAA1549
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.973073e-02	ci left: 4.833543e-01	ci right 5.030497e-01	k: 4932	n:10000
Cons ci ratio: 5.408478e-02	ci left: 3.349839e-01	ci right 3.537069e-01	k: 3443	n:10000
KS ci ratio: 4.384107e-02	ci left: 4.344288e-01	ci right 4.540037e-01	k: 4442	n:10000
KIAA1549   10000 perm   2 sec   (4974 perm/sec)   p_kst 4.442000e-01   p_cons 3.443000e-01   p_joint 4.932000e-01

Outputting figure to mutsig2_images.part000000000091/KIAA1549.14_5933_10000_0.4442_0.3443_0.4932.png
                gene_name: KIAA1549
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 3 percent done.
KIF1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.144422e-01	ci left: 9.895988e-02	ci right 1.110713e-01	k: 1049	n:10000
Cons ci ratio: 2.025482e-01	ci left: 3.243447e-02	ci right 3.983893e-02	k: 360	n:10000
KS ci ratio: 4.679252e-02	ci left: 4.026288e-01	ci right 4.220223e-01	k: 4123	n:10000
KIF1B   10000 perm   2 sec   (4676 perm/sec)   p_kst 4.123000e-01   p_cons 3.600000e-02   p_joint 1.049000e-01

Joint ci ratio: 8.345583e-02	ci left: 9.518871e-02	ci right 1.035282e-01	k: 1986	n:20000
Cons ci ratio: 1.421072e-01	ci left: 3.404014e-02	ci right 3.929568e-02	k: 732	n:20000
KS ci ratio: 3.317588e-02	ci left: 4.042194e-01	ci right 4.179065e-01	k: 8221	n:20000
KIF1B   20000 perm   5 sec   (4285 perm/sec)   p_kst 4.110500e-01   p_cons 3.660000e-02   p_joint 9.930000e-02

Joint ci ratio: 6.397296e-02	ci left: 1.076636e-01	ci right 1.148119e-01	k: 3336	n:30000
Cons ci ratio: 1.167772e-01	ci left: 3.408229e-02	ci right 3.834147e-02	k: 1085	n:30000
KS ci ratio: 2.713644e-02	ci left: 4.046263e-01	ci right 4.157911e-01	k: 12306	n:30000
KIF1B   30000 perm   7 sec   (4118 perm/sec)   p_kst 4.102000e-01   p_cons 3.616667e-02   p_joint 1.112000e-01

Joint ci ratio: 5.234193e-02	ci left: 1.197469e-01	ci right 1.262080e-01	k: 4918	n:40000
Cons ci ratio: 1.015699e-01	ci left: 3.407370e-02	ci right 3.774407e-02	k: 1435	n:40000
KS ci ratio: 2.358520e-02	ci left: 4.036522e-01	ci right 4.133111e-01	k: 16339	n:40000
KIF1B   40000 perm   10 sec   (4024 perm/sec)   p_kst 4.084750e-01   p_cons 3.587500e-02   p_joint 1.229500e-01

Joint ci ratio: 4.647100e-02	ci left: 1.216774e-01	ci right 1.274863e-01	k: 6228	n:50000
Cons ci ratio: 9.076841e-02	ci left: 3.432542e-02	ci right 3.760874e-02	k: 1797	n:50000
KS ci ratio: 2.114331e-02	ci left: 4.030687e-01	ci right 4.117020e-01	k: 20369	n:50000
KIF1B   50000 perm   13 sec   (3953 perm/sec)   p_kst 4.073800e-01   p_cons 3.594000e-02   p_joint 1.245600e-01

Outputting figure to mutsig2_images.part000000000091/KIF1B.13_6986_50000_0.40738_0.03594_0.12456.png
                gene_name: KIF1B
               theta_stop: 0.091 
                    nperm: 50000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.036 
      ci_cons_bounds_left: 0.034 
     ci_cons_bounds_right: 0.038 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 4 percent done.
KIAA2022
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.359516e-02	ci left: 2.128012e-01	ci right 2.291616e-01	k: 2209	n:10000
Cons ci ratio: 9.484152e-02	ci left: 1.389371e-01	ci right 1.528699e-01	k: 1458	n:10000
KS ci ratio: 6.358403e-02	ci left: 2.665620e-01	ci right 2.841691e-01	k: 2753	n:10000
KIAA2022   10000 perm   2 sec   (5169 perm/sec)   p_kst 2.753000e-01   p_cons 1.458000e-01   p_joint 2.209000e-01

Outputting figure to mutsig2_images.part000000000091/KIAA2022.11_4563_10000_0.2753_0.1458_0.2209.png
                gene_name: KIAA2022
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 6 percent done.
KIRREL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.357136e-01	ci left: 7.175179e-02	ci right 8.229618e-02	k: 769	n:10000
Cons ci ratio: 1.331091e-01	ci left: 7.446484e-02	ci right 8.518145e-02	k: 797	n:10000
KS ci ratio: 1.562625e-01	ci left: 5.455711e-02	ci right 6.390171e-02	k: 591	n:10000
KIRREL2   10000 perm   2 sec   (5542 perm/sec)   p_kst 5.910000e-02   p_cons 7.970000e-02   p_joint 7.690000e-02

Joint ci ratio: 1.098083e-01	ci left: 5.660168e-02	ci right 6.322698e-02	k: 1197	n:20000
Cons ci ratio: 9.165060e-02	ci left: 7.994658e-02	ci right 8.767492e-02	k: 1675	n:20000
KS ci ratio: 1.099548e-01	ci left: 5.645556e-02	ci right 6.307314e-02	k: 1194	n:20000
KIRREL2   20000 perm   4 sec   (5057 perm/sec)   p_kst 5.970000e-02   p_cons 8.375000e-02   p_joint 5.985000e-02

Joint ci ratio: 1.057862e-01	ci left: 4.144684e-02	ci right 4.610870e-02	k: 1312	n:30000
Cons ci ratio: 7.534105e-02	ci left: 7.963990e-02	ci right 8.590784e-02	k: 2482	n:30000
KS ci ratio: 9.236837e-02	ci left: 5.401154e-02	ci right 5.927474e-02	k: 1698	n:30000
KIRREL2   30000 perm   6 sec   (4839 perm/sec)   p_kst 5.660000e-02   p_cons 8.273333e-02   p_joint 4.373333e-02

Joint ci ratio: 9.791489e-02	ci left: 3.663558e-02	ci right 4.043179e-02	k: 1540	n:40000
Cons ci ratio: 6.556830e-02	ci left: 7.932919e-02	ci right 8.473167e-02	k: 3280	n:40000
KS ci ratio: 8.007486e-02	ci left: 5.425713e-02	ci right 5.880752e-02	k: 2260	n:40000
KIRREL2   40000 perm   9 sec   (4701 perm/sec)   p_kst 5.650000e-02   p_cons 8.200000e-02   p_joint 3.850000e-02

Outputting figure to mutsig2_images.part000000000091/KIRREL2.11_2231_40000_0.0565_0.082_0.0385.png
                gene_name: KIRREL2
               theta_stop: 0.098 
                    nperm: 40000 
                     p_ks: 0.057 
        ci_ks_bounds_left: 0.054 
       ci_ks_bounds_right: 0.059 
                   p_cons: 0.082 
      ci_cons_bounds_left: 0.079 
     ci_cons_bounds_right: 0.085 
                  p_joint: 0.038 
     ci_joint_bounds_left: 0.037 
    ci_joint_bounds_right: 0.040 

Current progress: 7 percent done.
KIF5A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.150553e-01	ci left: 9.798552e-02	ci right 1.100463e-01	k: 1039	n:10000
Cons ci ratio: 2.743868e-01	ci left: 1.725330e-02	ci right 2.283124e-02	k: 199	n:10000
KS ci ratio: 2.631636e-02	ci left: 6.801255e-01	ci right 6.983641e-01	k: 6893	n:10000
KIF5A   10000 perm   2 sec   (5245 perm/sec)   p_kst 6.893000e-01   p_cons 1.990000e-02   p_joint 1.039000e-01

Joint ci ratio: 7.900420e-02	ci left: 1.052534e-01	ci right 1.139605e-01	k: 2191	n:20000
Cons ci ratio: 1.950228e-01	ci left: 1.786671e-02	ci right 2.177465e-02	k: 395	n:20000
KS ci ratio: 1.899231e-02	ci left: 6.739869e-01	ci right 6.869606e-01	k: 13610	n:20000
KIF5A   20000 perm   4 sec   (4820 perm/sec)   p_kst 6.805000e-01   p_cons 1.975000e-02   p_joint 1.095500e-01

Joint ci ratio: 7.234807e-02	ci left: 8.589948e-02	ci right 9.238034e-02	k: 2673	n:30000
Cons ci ratio: 1.597865e-01	ci left: 1.809339e-02	ci right 2.126726e-02	k: 589	n:30000
KS ci ratio: 1.564896e-02	ci left: 6.712062e-01	ci right 6.818262e-01	k: 20296	n:30000
KIF5A   30000 perm   7 sec   (4608 perm/sec)   p_kst 6.765333e-01   p_cons 1.963333e-02   p_joint 8.910000e-02

Joint ci ratio: 5.756021e-02	ci left: 1.009014e-01	ci right 1.069062e-01	k: 4155	n:40000
Cons ci ratio: 1.351442e-01	ci left: 1.920624e-02	ci right 2.201396e-02	k: 823	n:40000
KS ci ratio: 1.362401e-02	ci left: 6.696072e-01	ci right 6.788175e-01	k: 26969	n:40000
KIF5A   40000 perm   9 sec   (4455 perm/sec)   p_kst 6.742250e-01   p_cons 2.057500e-02   p_joint 1.038750e-01

Joint ci ratio: 4.713020e-02	ci left: 1.186682e-01	ci right 1.244159e-01	k: 6076	n:50000
Cons ci ratio: 1.206976e-01	ci left: 1.941168e-02	ci right 2.192440e-02	k: 1032	n:50000
KS ci ratio: 1.218808e-02	ci left: 6.700118e-01	ci right 6.782480e-01	k: 33707	n:50000
KIF5A   50000 perm   12 sec   (4333 perm/sec)   p_kst 6.741400e-01   p_cons 2.064000e-02   p_joint 1.215200e-01

Joint ci ratio: 4.695165e-02	ci left: 1.016343e-01	ci right 1.065374e-01	k: 6244	n:60000
Cons ci ratio: 1.113614e-01	ci left: 1.910545e-02	ci right 2.137463e-02	k: 1213	n:60000
KS ci ratio: 1.110229e-02	ci left: 6.713191e-01	ci right 6.788306e-01	k: 40505	n:60000
KIF5A   60000 perm   14 sec   (4241 perm/sec)   p_kst 6.750833e-01   p_cons 2.021667e-02   p_joint 1.040667e-01

Joint ci ratio: 4.422757e-02	ci left: 9.866403e-02	ci right 1.031405e-01	k: 7062	n:70000
Cons ci ratio: 1.031503e-01	ci left: 1.917060e-02	ci right 2.126944e-02	k: 1414	n:70000
KS ci ratio: 1.025894e-02	ci left: 6.724471e-01	ci right 6.793955e-01	k: 47315	n:70000
KIF5A   70000 perm   17 sec   (4165 perm/sec)   p_kst 6.759286e-01   p_cons 2.020000e-02   p_joint 1.008857e-01

Joint ci ratio: 4.154307e-02	ci left: 9.806565e-02	ci right 1.022384e-01	k: 8011	n:80000
Cons ci ratio: 9.574003e-02	ci left: 1.954144e-02	ci right 2.151855e-02	k: 1641	n:80000
KS ci ratio: 9.583588e-03	ci left: 6.732582e-01	ci right 6.797540e-01	k: 54121	n:80000
KIF5A   80000 perm   20 sec   (4100 perm/sec)   p_kst 6.765125e-01   p_cons 2.051250e-02   p_joint 1.001375e-01

Outputting figure to mutsig2_images.part000000000091/KIF5A.10_3211_80000_0.67651_0.020512_0.10014.png
                gene_name: KIF5A
               theta_stop: 0.096 
                    nperm: 80000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.021 
      ci_cons_bounds_left: 0.020 
     ci_cons_bounds_right: 0.022 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.098 
    ci_joint_bounds_right: 0.10 

Current progress: 8 percent done.
KIAA1755
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.837333e-02	ci left: 1.570859e-01	ci right 1.717101e-01	k: 1643	n:10000
Cons ci ratio: 2.155899e-01	ci left: 2.854258e-02	ci right 3.553353e-02	k: 319	n:10000
KS ci ratio: 2.856056e-02	ci left: 6.437780e-01	ci right 6.625327e-01	k: 6532	n:10000
KIAA1755   10000 perm   2 sec   (5559 perm/sec)   p_kst 6.532000e-01   p_cons 3.190000e-02   p_joint 1.643000e-01

Joint ci ratio: 7.263950e-02	ci left: 1.224640e-01	ci right 1.317447e-01	k: 2541	n:20000
Cons ci ratio: 1.489962e-01	ci left: 3.095285e-02	ci right 3.598398e-02	k: 668	n:20000
KS ci ratio: 2.020734e-02	ci left: 6.463058e-01	ci right 6.595497e-01	k: 13059	n:20000
KIAA1755   20000 perm   4 sec   (4957 perm/sec)   p_kst 6.529500e-01   p_cons 3.340000e-02   p_joint 1.270500e-01

Joint ci ratio: 6.035749e-02	ci left: 1.195337e-01	ci right 1.270061e-01	k: 3697	n:30000
Cons ci ratio: 1.203285e-01	ci left: 3.210725e-02	ci right 3.625027e-02	k: 1024	n:30000
KS ci ratio: 1.654863e-02	ci left: 6.461773e-01	ci right 6.569934e-01	k: 19548	n:30000
KIAA1755   30000 perm   6 sec   (4782 perm/sec)   p_kst 6.516000e-01   p_cons 3.413333e-02   p_joint 1.232333e-01

Joint ci ratio: 5.300131e-02	ci left: 1.171024e-01	ci right 1.235028e-01	k: 4811	n:40000
Cons ci ratio: 1.032599e-01	ci left: 3.297654e-02	ci right 3.659140e-02	k: 1390	n:40000
KS ci ratio: 1.433084e-02	ci left: 6.469324e-01	ci right 6.562955e-01	k: 26065	n:40000
KIAA1755   40000 perm   9 sec   (4652 perm/sec)   p_kst 6.516250e-01   p_cons 3.475000e-02   p_joint 1.202750e-01

Joint ci ratio: 4.989566e-02	ci left: 1.071317e-01	ci right 1.126337e-01	k: 5493	n:50000
Cons ci ratio: 9.299081e-02	ci left: 3.272182e-02	ci right 3.593254e-02	k: 1715	n:50000
KS ci ratio: 1.314899e-02	ci left: 6.357346e-01	ci right 6.441692e-01	k: 31998	n:50000
KIAA1755   50000 perm   11 sec   (4558 perm/sec)   p_kst 6.399600e-01   p_cons 3.430000e-02   p_joint 1.098600e-01

Outputting figure to mutsig2_images.part000000000091/KIAA1755.8_3659_50000_0.63996_0.0343_0.10986.png
                gene_name: KIAA1755
               theta_stop: 0.093 
                    nperm: 50000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.034 
      ci_cons_bounds_left: 0.033 
     ci_cons_bounds_right: 0.036 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 10 percent done.
KIAA2018
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.365186e-02	ci left: 7.243132e-01	ci right 7.417508e-01	k: 7331	n:10000
Cons ci ratio: 2.607707e-02	ci left: 6.840560e-01	ci right 7.022314e-01	k: 6932	n:10000
KS ci ratio: 3.734125e-02	ci left: 5.143558e-01	ci right 5.340301e-01	k: 5242	n:10000
KIAA2018   10000 perm   2 sec   (4621 perm/sec)   p_kst 5.242000e-01   p_cons 6.932000e-01   p_joint 7.331000e-01

Outputting figure to mutsig2_images.part000000000091/KIAA2018.8_6758_10000_0.5242_0.6932_0.7331.png
                gene_name: KIAA2018
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 11 percent done.
KIF21A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.917035e-02	ci left: 3.789306e-01	ci right 3.981344e-01	k: 3885	n:10000
Cons ci ratio: 8.536721e-03	ci left: 9.505438e-01	ci right 9.587887e-01	k: 9548	n:10000
KS ci ratio: 6.787716e-02	ci left: 2.415369e-01	ci right 2.586089e-01	k: 2500	n:10000
KIF21A   10000 perm   2 sec   (4845 perm/sec)   p_kst 2.500000e-01   p_cons 9.548000e-01   p_joint 3.885000e-01

Outputting figure to mutsig2_images.part000000000091/KIF21A.8_5177_10000_0.25_0.9548_0.3885.png
                gene_name: KIF21A
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 13 percent done.
KIFAP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.112244e-02	ci left: 4.661697e-01	ci right 4.858443e-01	k: 4760	n:10000
Cons ci ratio: 4.845369e-02	ci left: 3.858982e-01	ci right 4.051627e-01	k: 3955	n:10000
KS ci ratio: 4.560629e-02	ci left: 4.150847e-01	ci right 4.345591e-01	k: 4248	n:10000
KIFAP3   10000 perm   2 sec   (6454 perm/sec)   p_kst 4.248000e-01   p_cons 3.955000e-01   p_joint 4.760000e-01

Outputting figure to mutsig2_images.part000000000091/KIFAP3.8_2459_10000_0.4248_0.3955_0.476.png
                gene_name: KIFAP3
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 14 percent done.
KIF21B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.226054e-02	ci left: 4.525901e-01	ci right 4.722318e-01	k: 4624	n:10000
Cons ci ratio: 2.869935e-02	ci left: 6.415648e-01	ci right 6.603472e-01	k: 6510	n:10000
KS ci ratio: 6.962205e-02	ci left: 2.322487e-01	ci right 2.491027e-01	k: 2406	n:10000
KIF21B   10000 perm   2 sec   (4645 perm/sec)   p_kst 2.406000e-01   p_cons 6.510000e-01   p_joint 4.624000e-01

Outputting figure to mutsig2_images.part000000000091/KIF21B.7_5011_10000_0.2406_0.651_0.4624.png
                gene_name: KIF21B
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 15 percent done.
KIF4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.877649e-02	ci left: 8.056233e-01	ci right 8.209937e-01	k: 8134	n:10000
Cons ci ratio: 2.914909e-02	ci left: 6.344240e-01	ci right 6.532922e-01	k: 6439	n:10000
KS ci ratio: 3.055584e-02	ci left: 6.124120e-01	ci right 6.315169e-01	k: 6220	n:10000
KIF4B   10000 perm   2 sec   (5679 perm/sec)   p_kst 6.220000e-01   p_cons 6.439000e-01   p_joint 8.134000e-01

Outputting figure to mutsig2_images.part000000000091/KIF4B.7_3709_10000_0.622_0.6439_0.8134.png
                gene_name: KIF4B
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 17 percent done.
KIT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.369350e-02	ci left: 1.723174e-01	ci right 1.874696e-01	k: 1798	n:10000
Cons ci ratio: 1.140181e-01	ci left: 9.964203e-02	ci right 1.117887e-01	k: 1056	n:10000
KS ci ratio: 6.317239e-02	ci left: 2.691358e-01	ci right 2.867938e-01	k: 2779	n:10000
KIT   10000 perm   2 sec   (5900 perm/sec)   p_kst 2.779000e-01   p_cons 1.056000e-01   p_joint 1.798000e-01

Joint ci ratio: 6.009962e-02	ci left: 1.701023e-01	ci right 1.806922e-01	k: 3507	n:20000
Cons ci ratio: 8.058186e-02	ci left: 1.015206e-01	ci right 1.100944e-01	k: 2115	n:20000
KS ci ratio: 4.436584e-02	ci left: 2.744798e-01	ci right 2.869840e-01	k: 5614	n:20000
KIT   20000 perm   4 sec   (5412 perm/sec)   p_kst 2.807000e-01   p_cons 1.057500e-01   p_joint 1.753500e-01

Outputting figure to mutsig2_images.part000000000091/KIT.7_3015_20000_0.2807_0.10575_0.17535.png
                gene_name: KIT
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 18 percent done.
KIAA1529
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.745976e-02	ci left: 3.083805e-01	ci right 3.267259e-01	k: 3175	n:10000
Cons ci ratio: 1.786148e-02	ci left: 8.205599e-01	ci right 8.354485e-01	k: 8281	n:10000
KS ci ratio: 6.814967e-02	ci left: 2.400544e-01	ci right 2.570923e-01	k: 2485	n:10000
KIAA1529   10000 perm   2 sec   (5344 perm/sec)   p_kst 2.485000e-01   p_cons 8.281000e-01   p_joint 3.175000e-01

Outputting figure to mutsig2_images.part000000000091/KIAA1529.6_5093_10000_0.2485_0.8281_0.3175.png
                gene_name: KIAA1529
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 20 percent done.
KIAA1632
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.926594e-02	ci left: 1.886528e-01	ci right 2.043244e-01	k: 1964	n:10000
Cons ci ratio: 3.377316e-02	ci left: 5.641375e-01	ci right 5.836195e-01	k: 5739	n:10000
KS ci ratio: 1.204255e-01	ci left: 9.000254e-02	ci right 1.016341e-01	k: 957	n:10000
KIAA1632   10000 perm   2 sec   (4370 perm/sec)   p_kst 9.570000e-02   p_cons 5.739000e-01   p_joint 1.964000e-01

Joint ci ratio: 5.716596e-02	ci left: 1.848801e-01	ci right 1.958101e-01	k: 3806	n:20000
Cons ci ratio: 2.295524e-02	ci left: 5.863037e-01	ci right 5.999693e-01	k: 11863	n:20000
KS ci ratio: 8.378394e-02	ci left: 9.450185e-02	ci right 1.028153e-01	k: 1972	n:20000
KIAA1632   20000 perm   5 sec   (3995 perm/sec)   p_kst 9.860000e-02   p_cons 5.931500e-01   p_joint 1.903000e-01

Outputting figure to mutsig2_images.part000000000091/KIAA1632.6_7916_20000_0.0986_0.59315_0.1903.png
                gene_name: KIAA1632
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.099 
        ci_ks_bounds_left: 0.095 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 21 percent done.
KIAA2026
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.975368e-02	ci left: 7.894875e-01	ci right 8.053389e-01	k: 7975	n:10000
Cons ci ratio: 3.038716e-02	ci left: 6.150242e-01	ci right 6.341032e-01	k: 6246	n:10000
KS ci ratio: 2.077029e-02	ci left: 7.725604e-01	ci right 7.888758e-01	k: 7808	n:10000
KIAA2026   10000 perm   2 sec   (4666 perm/sec)   p_kst 7.808000e-01   p_cons 6.246000e-01   p_joint 7.975000e-01

Outputting figure to mutsig2_images.part000000000091/KIAA2026.6_6344_10000_0.7808_0.6246_0.7975.png
                gene_name: KIAA2026
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 23 percent done.
KIF13B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.619643e-02	ci left: 1.355076e-01	ci right 1.493014e-01	k: 1423	n:10000
Cons ci ratio: 5.372743e-02	ci left: 3.379640e-01	ci right 3.567250e-01	k: 3473	n:10000
KS ci ratio: 9.353182e-02	ci left: 1.423679e-01	ci right 1.564370e-01	k: 1493	n:10000
KIF13B   10000 perm   2 sec   (5192 perm/sec)   p_kst 1.493000e-01   p_cons 3.473000e-01   p_joint 1.423000e-01

Outputting figure to mutsig2_images.part000000000091/KIF13B.6_5641_10000_0.1493_0.3473_0.1423.png
                gene_name: KIF13B
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 24 percent done.
KIF16B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.086757e-02	ci left: 3.630124e-01	ci right 3.820619e-01	k: 3725	n:10000
KS ci ratio: 2.483886e-02	ci left: 7.045272e-01	ci right 7.223483e-01	k: 7135	n:10000
KIF16B   10000 perm   2 sec   (5054 perm/sec)   p_kst 7.135000e-01   p_cons 3.725000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000091/KIF16B.6_4058_10000_0.7135_0.3725_1.png
                gene_name: KIF16B
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 25 percent done.
KIF2C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.147867e-02	ci left: 7.607128e-01	ci right 7.773302e-01	k: 7691	n:10000
Cons ci ratio: 5.584290e-03	ci left: 9.772755e-01	ci right 9.828399e-01	k: 9802	n:10000
KS ci ratio: 4.117193e-02	ci left: 4.655704e-01	ci right 4.852439e-01	k: 4754	n:10000
KIF2C   10000 perm   2 sec   (6078 perm/sec)   p_kst 4.754000e-01   p_cons 9.802000e-01   p_joint 7.691000e-01

Outputting figure to mutsig2_images.part000000000091/KIF2C.6_2262_10000_0.4754_0.9802_0.7691.png
                gene_name: KIF2C
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 27 percent done.
KIR3DL1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.412510e-02	ci left: 1.407993e-01	ci right 1.548065e-01	k: 1477	n:10000
Cons ci ratio: 1.372648e-01	ci left: 7.020239e-02	ci right 8.064655e-02	k: 753	n:10000
KS ci ratio: 1.089973e-02	ci left: 9.230676e-01	ci right 9.332812e-01	k: 9283	n:10000
KIR3DL1   10000 perm   1 sec   (6918 perm/sec)   p_kst 9.283000e-01   p_cons 7.530000e-02   p_joint 1.477000e-01

Joint ci ratio: 4.327114e-02	ci left: 2.846113e-01	ci right 2.972495e-01	k: 5818	n:20000
Cons ci ratio: 9.702811e-02	ci left: 7.177763e-02	ci right 7.914636e-02	k: 1508	n:20000
KS ci ratio: 7.745788e-03	ci left: 9.239209e-01	ci right 9.311542e-01	k: 18552	n:20000
KIR3DL1   20000 perm   3 sec   (6159 perm/sec)   p_kst 9.276000e-01   p_cons 7.540000e-02   p_joint 2.909000e-01

Outputting figure to mutsig2_images.part000000000091/KIR3DL1.5_1371_20000_0.9276_0.0754_0.2909.png
                gene_name: KIR3DL1
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.075 
      ci_cons_bounds_left: 0.072 
     ci_cons_bounds_right: 0.079 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 28 percent done.
KLB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.035409e-02	ci left: 1.511960e-01	ci right 1.656036e-01	k: 1583	n:10000
Cons ci ratio: 1.420057e-01	ci left: 6.575174e-02	ci right 7.590000e-02	k: 707	n:10000
KS ci ratio: 7.094230e-02	ci left: 2.255330e-01	ci right 2.422223e-01	k: 2338	n:10000
KLB   10000 perm   2 sec   (5839 perm/sec)   p_kst 2.338000e-01   p_cons 7.070000e-02   p_joint 1.583000e-01

Joint ci ratio: 7.631289e-02	ci left: 1.120847e-01	ci right 1.210271e-01	k: 2330	n:20000
Cons ci ratio: 9.268048e-02	ci left: 7.828247e-02	ci right 8.593954e-02	k: 1641	n:20000
KS ci ratio: 5.009438e-02	ci left: 2.284934e-01	ci right 2.402839e-01	k: 4687	n:20000
KLB   20000 perm   4 sec   (5254 perm/sec)   p_kst 2.343500e-01   p_cons 8.205000e-02   p_joint 1.165000e-01

Outputting figure to mutsig2_images.part000000000091/KLB.6_3155_20000_0.23435_0.08205_0.1165.png
                gene_name: KLB
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.082 
      ci_cons_bounds_left: 0.078 
     ci_cons_bounds_right: 0.086 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 30 percent done.
KIAA1841
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.669516e-02	ci left: 5.230630e-01	ci right 5.427178e-01	k: 5329	n:10000
Cons ci ratio: 5.547877e-02	ci left: 3.236634e-01	ci right 3.422340e-01	k: 3329	n:10000
KS ci ratio: 3.314893e-02	ci left: 5.732631e-01	ci right 5.926885e-01	k: 5830	n:10000
KIAA1841   10000 perm   2 sec   (6137 perm/sec)   p_kst 5.830000e-01   p_cons 3.329000e-01   p_joint 5.329000e-01

Outputting figure to mutsig2_images.part000000000091/KIAA1841.5_2337_10000_0.583_0.3329_0.5329.png
                gene_name: KIAA1841
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 31 percent done.
KIAA1958
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.031327e-01	ci left: 3.224430e-02	ci right 3.962922e-02	k: 358	n:10000
Cons ci ratio: 5.766130e-01	ci left: 3.284168e-03	ci right 6.016771e-03	k: 45	n:10000
KS ci ratio: 1.839835e-02	ci left: 8.118192e-01	ci right 8.269942e-01	k: 8195	n:10000
KIAA1958   10000 perm   2 sec   (5918 perm/sec)   p_kst 8.195000e-01   p_cons 4.500000e-03   p_joint 3.580000e-02

Joint ci ratio: 1.132152e-01	ci left: 5.333981e-02	ci right 5.978987e-02	k: 1130	n:20000
Cons ci ratio: 3.797244e-01	ci left: 4.295928e-03	ci right 6.351929e-03	k: 105	n:20000
KS ci ratio: 1.301576e-02	ci left: 8.139467e-01	ci right 8.246603e-01	k: 16387	n:20000
KIAA1958   20000 perm   4 sec   (5376 perm/sec)   p_kst 8.193500e-01   p_cons 5.250000e-03   p_joint 5.650000e-02

Joint ci ratio: 1.134582e-01	ci left: 3.609157e-02	ci right 4.046510e-02	k: 1147	n:30000
Cons ci ratio: 3.043262e-01	ci left: 4.663813e-03	ci right 6.367437e-03	k: 164	n:30000
KS ci ratio: 1.116514e-02	ci left: 7.997309e-01	ci right 8.087434e-01	k: 24128	n:30000
KIAA1958   30000 perm   6 sec   (5153 perm/sec)   p_kst 8.042667e-01   p_cons 5.466667e-03   p_joint 3.823333e-02

Joint ci ratio: 9.034401e-02	ci left: 4.291567e-02	ci right 4.700072e-02	k: 1797	n:40000
Cons ci ratio: 2.413810e-01	ci left: 5.759475e-03	ci right 7.363423e-03	k: 261	n:40000
KS ci ratio: 9.625989e-03	ci left: 8.017628e-01	ci right 8.095428e-01	k: 32227	n:40000
KIAA1958   40000 perm   8 sec   (5000 perm/sec)   p_kst 8.056750e-01   p_cons 6.525000e-03   p_joint 4.492500e-02

Joint ci ratio: 7.320283e-02	ci left: 5.225103e-02	ci right 5.624092e-02	k: 2711	n:50000
Cons ci ratio: 2.154023e-01	ci left: 5.871172e-03	ci right 7.307016e-03	k: 328	n:50000
KS ci ratio: 8.628831e-03	ci left: 8.014794e-01	ci right 8.084451e-01	k: 40249	n:50000
KIAA1958   50000 perm   10 sec   (4875 perm/sec)   p_kst 8.049800e-01   p_cons 6.560000e-03   p_joint 5.422000e-02

Joint ci ratio: 6.024244e-02	ci left: 6.392746e-02	ci right 6.791465e-02	k: 3954	n:60000
Cons ci ratio: 1.953440e-01	ci left: 6.015290e-03	ci right 7.333110e-03	k: 399	n:60000
KS ci ratio: 7.874823e-03	ci left: 8.018738e-01	ci right 8.082300e-01	k: 48304	n:60000
KIAA1958   60000 perm   13 sec   (4770 perm/sec)   p_kst 8.050667e-01   p_cons 6.650000e-03   p_joint 6.590000e-02

Joint ci ratio: 5.765009e-02	ci left: 6.016820e-02	ci right 6.375393e-02	k: 4336	n:70000
Cons ci ratio: 1.837837e-01	ci left: 5.863547e-03	ci right 7.063629e-03	k: 451	n:70000
KS ci ratio: 7.288560e-03	ci left: 8.022032e-01	ci right 8.080857e-01	k: 56361	n:70000
KIAA1958   70000 perm   15 sec   (4677 perm/sec)   p_kst 8.051571e-01   p_cons 6.442857e-03   p_joint 6.194286e-02

Joint ci ratio: 5.871528e-02	ci left: 5.122333e-02	ci right 5.433420e-02	k: 4221	n:80000
Cons ci ratio: 1.763623e-01	ci left: 5.596065e-03	ci right 6.690214e-03	k: 490	n:80000
KS ci ratio: 6.838880e-03	ci left: 8.014204e-01	ci right 8.069325e-01	k: 64335	n:80000
KIAA1958   80000 perm   17 sec   (4594 perm/sec)   p_kst 8.041875e-01   p_cons 6.125000e-03   p_joint 5.276250e-02

Joint ci ratio: 4.922118e-02	ci left: 6.421063e-02	ci right 6.746187e-02	k: 5924	n:90000
Cons ci ratio: 1.654307e-01	ci left: 5.686930e-03	ci right 6.723063e-03	k: 557	n:90000
KS ci ratio: 6.440445e-03	ci left: 8.019383e-01	ci right 8.071309e-01	k: 72409	n:90000
KIAA1958   90000 perm   20 sec   (4509 perm/sec)   p_kst 8.045444e-01   p_cons 6.188889e-03   p_joint 6.582222e-02

Joint ci ratio: 5.068453e-02	ci left: 5.500770e-02	ci right 5.787809e-02	k: 5643	n:100000
Cons ci ratio: 1.571967e-01	ci left: 5.694027e-03	ci right 6.674947e-03	k: 617	n:100000
KS ci ratio: 6.104198e-03	ci left: 8.023698e-01	ci right 8.072925e-01	k: 80484	n:100000
KIAA1958   100000 perm   23 sec   (4429 perm/sec)   p_kst 8.048400e-01   p_cons 6.170000e-03   p_joint 5.643000e-02

Joint ci ratio: 4.749000e-02	ci left: 5.694043e-02	ci right 5.971927e-02	k: 6415	n:110000
Cons ci ratio: 1.509802e-01	ci left: 5.630878e-03	ci right 6.559089e-03	k: 669	n:110000
KS ci ratio: 5.823052e-03	ci left: 8.023265e-01	ci right 8.070211e-01	k: 88515	n:110000
KIAA1958   110000 perm   25 sec   (4354 perm/sec)   p_kst 8.046818e-01   p_cons 6.081818e-03   p_joint 5.831818e-02

Joint ci ratio: 4.382989e-02	ci left: 6.112036e-02	ci right 6.386750e-02	k: 7498	n:120000
Cons ci ratio: 1.443450e-01	ci left: 5.667255e-03	ci right 6.556868e-03	k: 732	n:120000
KS ci ratio: 5.579553e-03	ci left: 8.021777e-01	ci right 8.066743e-01	k: 96532	n:120000
KIAA1958   120000 perm   28 sec   (4287 perm/sec)   p_kst 8.044333e-01   p_cons 6.100000e-03   p_joint 6.248333e-02

Joint ci ratio: 4.284337e-02	ci left: 5.920236e-02	ci right 6.180190e-02	k: 7864	n:130000
Cons ci ratio: 1.390424e-01	ci left: 5.654229e-03	ci right 6.506490e-03	k: 789	n:130000
KS ci ratio: 5.347332e-03	ci left: 8.030519e-01	ci right 8.073652e-01	k: 104678	n:130000
KIAA1958   130000 perm   31 sec   (4222 perm/sec)   p_kst 8.052154e-01   p_cons 6.069231e-03   p_joint 6.049231e-02

Joint ci ratio: 4.724353e-02	ci left: 4.576302e-02	ci right 4.798437e-02	k: 6561	n:140000
Cons ci ratio: 1.462243e-01	ci left: 4.733580e-03	ci right 5.487141e-03	k: 714	n:140000
KS ci ratio: 5.153187e-03	ci left: 8.031084e-01	ci right 8.072647e-01	k: 112727	n:140000
KIAA1958   140000 perm   34 sec   (4159 perm/sec)   p_kst 8.051929e-01   p_cons 5.100000e-03   p_joint 4.686429e-02

Joint ci ratio: 4.441491e-02	ci left: 4.826916e-02	ci right 5.046830e-02	k: 7404	n:150000
Cons ci ratio: 1.427794e-01	ci left: 4.642890e-03	ci right 5.363115e-03	k: 749	n:150000
KS ci ratio: 4.976433e-03	ci left: 8.033070e-01	ci right 8.073212e-01	k: 120798	n:150000
KIAA1958   150000 perm   37 sec   (4094 perm/sec)   p_kst 8.053200e-01   p_cons 4.993333e-03   p_joint 4.936000e-02

Joint ci ratio: 4.665563e-02	ci left: 4.126952e-02	ci right 4.324711e-02	k: 6760	n:160000
Cons ci ratio: 1.375560e-01	ci left: 4.702509e-03	ci right 5.403111e-03	k: 807	n:160000
KS ci ratio: 4.818333e-03	ci left: 8.033762e-01	ci right 8.072627e-01	k: 128852	n:160000
KIAA1958   160000 perm   40 sec   (4033 perm/sec)   p_kst 8.053250e-01   p_cons 5.043750e-03   p_joint 4.225000e-02

Joint ci ratio: 4.183956e-02	ci left: 4.807179e-02	ci right 5.013186e-02	k: 8346	n:170000
Cons ci ratio: 1.327130e-01	ci left: 4.766912e-03	ci right 5.450132e-03	k: 867	n:170000
KS ci ratio: 4.220006e-03	ci left: 8.336404e-01	ci right 8.371717e-01	k: 142020	n:170000
KIAA1958   170000 perm   43 sec   (3974 perm/sec)   p_kst 8.354118e-01   p_cons 5.100000e-03   p_joint 4.909412e-02

Joint ci ratio: 4.260549e-02	ci left: 4.395889e-02	ci right 4.587802e-02	k: 8084	n:180000
Cons ci ratio: 1.289075e-01	ci left: 4.781522e-03	ci right 5.445682e-03	k: 919	n:180000
KS ci ratio: 4.105839e-03	ci left: 8.333719e-01	ci right 8.368062e-01	k: 150317	n:180000
KIAA1958   180000 perm   46 sec   (3898 perm/sec)   p_kst 8.350944e-01   p_cons 5.105556e-03   p_joint 4.491111e-02

Joint ci ratio: 4.208514e-02	ci left: 4.274867e-02	ci right 4.459161e-02	k: 8296	n:190000
Cons ci ratio: 1.250887e-01	ci left: 4.820339e-03	ci right 5.468585e-03	k: 976	n:190000
KS ci ratio: 3.993041e-03	ci left: 8.336456e-01	ci right 8.369863e-01	k: 158711	n:190000
KIAA1958   190000 perm   49 sec   (3840 perm/sec)   p_kst 8.353211e-01   p_cons 5.136842e-03   p_joint 4.366316e-02

Joint ci ratio: 4.067660e-02	ci left: 4.347166e-02	ci right 4.528158e-02	k: 8874	n:200000
Cons ci ratio: 1.215313e-01	ci left: 4.860383e-03	ci right 5.494089e-03	k: 1034	n:200000
KS ci ratio: 3.890180e-03	ci left: 8.338127e-01	ci right 8.370676e-01	k: 167089	n:200000
KIAA1958   200000 perm   53 sec   (3782 perm/sec)   p_kst 8.354450e-01   p_cons 5.170000e-03   p_joint 4.437000e-02

Joint ci ratio: 4.024335e-02	ci left: 4.235797e-02	ci right 4.410229e-02	k: 9077	n:210000
Cons ci ratio: 1.186436e-01	ci left: 4.864499e-03	ci right 5.482614e-03	k: 1085	n:210000
KS ci ratio: 3.798297e-03	ci left: 8.337162e-01	ci right 8.368936e-01	k: 175415	n:210000
KIAA1958   210000 perm   56 sec   (3729 perm/sec)   p_kst 8.353095e-01   p_cons 5.166667e-03   p_joint 4.322381e-02

Joint ci ratio: 3.974653e-02	ci left: 4.149873e-02	ci right 4.318608e-02	k: 9314	n:220000
Cons ci ratio: 1.154938e-01	ci left: 4.908134e-03	ci right 5.514106e-03	k: 1145	n:220000
KS ci ratio: 3.714222e-03	ci left: 8.335107e-01	ci right 8.366168e-01	k: 183715	n:220000
KIAA1958   220000 perm   60 sec   (3677 perm/sec)   p_kst 8.350682e-01   p_cons 5.204545e-03   p_joint 4.233636e-02

Joint ci ratio: 3.870800e-02	ci left: 4.186009e-02	ci right 4.351667e-02	k: 9817	n:230000
Cons ci ratio: 1.133405e-01	ci left: 4.880562e-03	ci right 5.471145e-03	k: 1189	n:230000
KS ci ratio: 3.633364e-03	ci left: 8.334854e-01	ci right 8.365236e-01	k: 192052	n:230000
KIAA1958   230000 perm   63 sec   (3629 perm/sec)   p_kst 8.350087e-01   p_cons 5.169565e-03   p_joint 4.268261e-02

Joint ci ratio: 3.797802e-02	ci left: 4.169638e-02	ci right 4.331469e-02	k: 10200	n:240000
Cons ci ratio: 1.108528e-01	ci left: 4.895899e-03	ci right 5.474484e-03	k: 1243	n:240000
KS ci ratio: 3.558481e-03	ci left: 8.333918e-01	ci right 8.363668e-01	k: 200372	n:240000
KIAA1958   240000 perm   67 sec   (3575 perm/sec)   p_kst 8.348833e-01   p_cons 5.179167e-03   p_joint 4.250000e-02

Joint ci ratio: 3.760616e-02	ci left: 4.086818e-02	ci right 4.243847e-02	k: 10412	n:250000
Cons ci ratio: 1.083542e-01	ci left: 4.925707e-03	ci right 5.493857e-03	k: 1301	n:250000
KS ci ratio: 3.486172e-03	ci left: 8.334548e-01	ci right 8.363694e-01	k: 208729	n:250000
KIAA1958   250000 perm   71 sec   (3529 perm/sec)   p_kst 8.349160e-01   p_cons 5.204000e-03   p_joint 4.164800e-02

Joint ci ratio: 3.640404e-02	ci left: 4.191460e-02	ci right 4.347254e-02	k: 11099	n:260000
Cons ci ratio: 1.063717e-01	ci left: 4.919656e-03	ci right 5.476077e-03	k: 1350	n:260000
KS ci ratio: 3.418289e-03	ci left: 8.334981e-01	ci right 8.363559e-01	k: 217082	n:260000
KIAA1958   260000 perm   75 sec   (3484 perm/sec)   p_kst 8.349308e-01   p_cons 5.192308e-03   p_joint 4.268846e-02

Joint ci ratio: 3.664809e-02	ci left: 3.990637e-02	ci right 4.139981e-02	k: 10975	n:270000
Cons ci ratio: 1.044193e-01	ci left: 4.921357e-03	ci right 5.467125e-03	k: 1401	n:270000
KS ci ratio: 3.355620e-03	ci left: 8.334235e-01	ci right 8.362285e-01	k: 225404	n:270000
KIAA1958   270000 perm   79 sec   (3435 perm/sec)   p_kst 8.348296e-01   p_cons 5.188889e-03   p_joint 4.064815e-02

Joint ci ratio: 3.672809e-02	ci left: 3.837441e-02	ci right 3.981372e-02	k: 10945	n:280000
Cons ci ratio: 1.024643e-01	ci left: 4.933463e-03	ci right 5.469714e-03	k: 1455	n:280000
KS ci ratio: 3.295721e-03	ci left: 8.334013e-01	ci right 8.361560e-01	k: 233739	n:280000
KIAA1958   280000 perm   83 sec   (3393 perm/sec)   p_kst 8.347821e-01   p_cons 5.196429e-03   p_joint 3.908929e-02

Joint ci ratio: 3.446063e-02	ci left: 4.197726e-02	ci right 4.345258e-02	k: 12386	n:290000
Cons ci ratio: 1.005816e-01	ci left: 4.948185e-03	ci right 5.475570e-03	k: 1510	n:290000
KS ci ratio: 3.237744e-03	ci left: 8.334814e-01	ci right 8.361878e-01	k: 242103	n:290000
KIAA1958   290000 perm   86 sec   (3354 perm/sec)   p_kst 8.348379e-01   p_cons 5.206897e-03   p_joint 4.271034e-02

Joint ci ratio: 3.413281e-02	ci left: 4.139408e-02	ci right 4.283479e-02	k: 12633	n:300000
Cons ci ratio: 9.924604e-02	ci left: 4.916493e-03	ci right 5.433137e-03	k: 1551	n:300000
KS ci ratio: 3.182338e-03	ci left: 8.335900e-01	ci right 8.362502e-01	k: 250477	n:300000
KIAA1958   300000 perm   90 sec   (3316 perm/sec)   p_kst 8.349233e-01   p_cons 5.170000e-03   p_joint 4.211000e-02

Outputting figure to mutsig2_images.part000000000091/KIAA1958.5_2163_300000_0.83492_0.00517_0.04211.png
                gene_name: KIAA1958
               theta_stop: 0.099 
                    nperm: 300000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.0052 
      ci_cons_bounds_left: 0.0049 
     ci_cons_bounds_right: 0.0054 
                  p_joint: 0.042 
     ci_joint_bounds_left: 0.041 
    ci_joint_bounds_right: 0.043 

Current progress: 32 percent done.
KIDINS220
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.919105e-02	ci left: 3.787315e-01	ci right 3.979336e-01	k: 3883	n:10000
Cons ci ratio: 7.082374e-02	ci left: 2.261254e-01	ci right 2.428295e-01	k: 2344	n:10000
KS ci ratio: 4.105657e-02	ci left: 4.669687e-01	ci right 4.866448e-01	k: 4768	n:10000
KIDINS220   10000 perm   2 sec   (4862 perm/sec)   p_kst 4.768000e-01   p_cons 2.344000e-01   p_joint 3.883000e-01

Outputting figure to mutsig2_images.part000000000091/KIDINS220.5_5432_10000_0.4768_0.2344_0.3883.png
                gene_name: KIDINS220
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 34 percent done.
KIF14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.639309e-03	ci left: 9.687871e-01	ci right 9.753341e-01	k: 9722	n:10000
Cons ci ratio: 1.842321e-02	ci left: 8.114128e-01	ci right 8.266008e-01	k: 8191	n:10000
KS ci ratio: 1.268250e-02	ci left: 8.993926e-01	ci right 9.109701e-01	k: 9053	n:10000
KIF14   10000 perm   2 sec   (5354 perm/sec)   p_kst 9.053000e-01   p_cons 8.191000e-01   p_joint 9.722000e-01

Outputting figure to mutsig2_images.part000000000091/KIF14.5_5063_10000_0.9053_0.8191_0.9722.png
                gene_name: KIF14
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 35 percent done.
KIF19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.969165e-02	ci left: 3.739550e-01	ci right 3.931129e-01	k: 3835	n:10000
Cons ci ratio: 1.939234e-02	ci left: 7.954727e-01	ci right 8.111502e-01	k: 8034	n:10000
KS ci ratio: 7.450460e-02	ci left: 2.086584e-01	ci right 2.249069e-01	k: 2167	n:10000
KIF19   10000 perm   2 sec   (5880 perm/sec)   p_kst 2.167000e-01   p_cons 8.034000e-01   p_joint 3.835000e-01

Outputting figure to mutsig2_images.part000000000091/KIF19.5_3077_10000_0.2167_0.8034_0.3835.png
                gene_name: KIF19
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 37 percent done.
KIR2DS4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.776672e-02	ci left: 1.946611e-01	ci right 2.105125e-01	k: 2025	n:10000
Cons ci ratio: 5.148235e-02	ci left: 3.574437e-01	ci right 3.764339e-01	k: 3669	n:10000
KS ci ratio: 9.327507e-02	ci left: 1.430542e-01	ci right 1.571503e-01	k: 1500	n:10000
KIR2DS4   10000 perm   2 sec   (6525 perm/sec)   p_kst 1.500000e-01   p_cons 3.669000e-01   p_joint 2.025000e-01

Outputting figure to mutsig2_images.part000000000091/KIR2DS4.5_925_10000_0.15_0.3669_0.2025.png
                gene_name: KIR2DS4
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 38 percent done.
KL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.306014e-02	ci left: 7.342143e-01	ci right 7.514440e-01	k: 7429	n:10000
KS ci ratio: 9.821929e-03	ci left: 9.362019e-01	ci right 9.455392e-01	k: 9410	n:10000
KL   10000 perm   2 sec   (5929 perm/sec)   p_kst 9.410000e-01   p_cons 7.429000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000091/KL.5_3059_10000_0.941_0.7429_1.png
                gene_name: KL
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 39 percent done.
KIAA1683
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.397830e-02	ci left: 7.188599e-01	ci right 7.364073e-01	k: 7277	n:10000
KS ci ratio: 2.405695e-02	ci left: 7.175473e-01	ci right 7.351207e-01	k: 7264	n:10000
KIAA1683   10000 perm   2 sec   (5673 perm/sec)   p_kst 7.264000e-01   p_cons 7.277000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000091/KIAA1683.4_4116_10000_0.7264_0.7277_1.png
                gene_name: KIAA1683
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 41 percent done.
KIAA1715
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.712391e-03	ci left: 9.681537e-01	ci right 9.747678e-01	k: 9716	n:10000
KS ci ratio: 5.669586e-03	ci left: 9.766355e-01	ci right 9.822803e-01	k: 9796	n:10000
KIAA1715   10000 perm   2 sec   (6503 perm/sec)   p_kst 9.796000e-01   p_cons 9.716000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000091/KIAA1715.4_1335_10000_0.9796_0.9716_1.png
                gene_name: KIAA1715
               theta_stop: 0.0067 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 42 percent done.
KIAA1751
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.222166e-02	ci left: 3.508823e-01	ci right 3.697992e-01	k: 3603	n:10000
Cons ci ratio: 7.342460e-02	ci left: 2.135905e-01	ci right 2.299719e-01	k: 2217	n:10000
KS ci ratio: 3.647465e-02	ci left: 5.260662e-01	ci right 5.457129e-01	k: 5359	n:10000
KIAA1751   10000 perm   2 sec   (6058 perm/sec)   p_kst 5.359000e-01   p_cons 2.217000e-01   p_joint 3.603000e-01

Outputting figure to mutsig2_images.part000000000091/KIAA1751.4_2357_10000_0.5359_0.2217_0.3603.png
                gene_name: KIAA1751
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 44 percent done.
KIAA1797
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.806611e-02	ci left: 5.047513e-01	ci right 5.244402e-01	k: 5146	n:10000
Cons ci ratio: 3.215674e-02	ci left: 5.880118e-01	ci right 6.073313e-01	k: 5977	n:10000
KS ci ratio: 5.268928e-02	ci left: 3.468072e-01	ci right 3.656766e-01	k: 3562	n:10000
KIAA1797   10000 perm   2 sec   (5151 perm/sec)   p_kst 3.562000e-01   p_cons 5.977000e-01   p_joint 5.146000e-01

Outputting figure to mutsig2_images.part000000000091/KIAA1797.4_5578_10000_0.3562_0.5977_0.5146.png
                gene_name: KIAA1797
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 45 percent done.
KIAA1804
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.017006e-01	ci left: 1.409482e-02	ci right 1.919237e-02	k: 165	n:10000
Cons ci ratio: 4.233520e-01	ci left: 6.705543e-03	ci right 1.038936e-02	k: 84	n:10000
KS ci ratio: 8.163954e-01	ci left: 1.379226e-03	ci right 3.328943e-03	k: 22	n:10000
KIAA1804   10000 perm   2 sec   (6071 perm/sec)   p_kst 2.200000e-03   p_cons 8.400000e-03   p_joint 1.650000e-02

Joint ci ratio: 4.548356e-01	ci left: 2.862076e-03	ci right 4.587170e-03	k: 73	n:20000
Cons ci ratio: 2.908546e-01	ci left: 7.691529e-03	ci right 1.035416e-02	k: 179	n:20000
KS ci ratio: 5.772931e-01	ci left: 1.641624e-03	ci right 3.009532e-03	k: 45	n:20000
KIAA1804   20000 perm   4 sec   (5493 perm/sec)   p_kst 2.250000e-03   p_cons 8.950000e-03   p_joint 3.650000e-03

Joint ci ratio: 3.417378e-01	ci left: 3.621720e-03	ci right 5.143390e-03	k: 130	n:30000
Cons ci ratio: 2.379288e-01	ci left: 7.899689e-03	ci right 1.006368e-02	k: 268	n:30000
KS ci ratio: 4.296732e-01	ci left: 2.174473e-03	ci right 3.391668e-03	k: 82	n:30000
KIAA1804   30000 perm   6 sec   (5236 perm/sec)   p_kst 2.733333e-03   p_cons 8.933333e-03   p_joint 4.333333e-03

Joint ci ratio: 4.017006e-01	ci left: 1.899444e-03	ci right 2.875048e-03	k: 94	n:40000
Cons ci ratio: 2.042414e-01	ci left: 8.192693e-03	ci right 1.007960e-02	k: 364	n:40000
KS ci ratio: 3.634302e-01	ci left: 2.374173e-03	ci right 3.450008e-03	k: 115	n:40000
KIAA1804   40000 perm   8 sec   (5033 perm/sec)   p_kst 2.875000e-03   p_cons 9.100000e-03   p_joint 2.350000e-03

Joint ci ratio: 2.383605e-01	ci left: 4.738858e-03	ci right 6.039583e-03	k: 268	n:50000
Cons ci ratio: 1.821264e-01	ci left: 8.343543e-03	ci right 1.003418e-02	k: 458	n:50000
KS ci ratio: 3.296545e-01	ci left: 2.355912e-03	ci right 3.303277e-03	k: 140	n:50000
KIAA1804   50000 perm   10 sec   (4913 perm/sec)   p_kst 2.800000e-03   p_cons 9.160000e-03   p_joint 5.360000e-03

Joint ci ratio: 4.523559e-01	ci left: 9.685522e-04	ci right 1.548093e-03	k: 74	n:60000
Cons ci ratio: 1.662277e-01	ci left: 8.419580e-03	ci right 9.961789e-03	k: 550	n:60000
KS ci ratio: 3.029138e-01	ci left: 2.362254e-03	ci right 3.220297e-03	k: 166	n:60000
KIAA1804   60000 perm   12 sec   (4808 perm/sec)   p_kst 2.766667e-03   p_cons 9.166667e-03   p_joint 1.233333e-03

Joint ci ratio: 4.200039e-01	ci left: 9.828124e-04	ci right 1.517057e-03	k: 86	n:70000
Cons ci ratio: 1.526832e-01	ci left: 8.615931e-03	ci right 1.005375e-02	k: 652	n:70000
KS ci ratio: 2.862736e-01	ci left: 2.289392e-03	ci right 3.067032e-03	k: 186	n:70000
KIAA1804   70000 perm   15 sec   (4709 perm/sec)   p_kst 2.657143e-03   p_cons 9.314286e-03   p_joint 1.228571e-03

Joint ci ratio: 4.152854e-01	ci left: 8.823227e-04	ci right 1.355058e-03	k: 88	n:80000
Cons ci ratio: 1.418929e-01	ci left: 8.779090e-03	ci right 1.013184e-02	k: 755	n:80000
KS ci ratio: 2.676054e-01	ci left: 2.317310e-03	ci right 3.044503e-03	k: 213	n:80000
KIAA1804   80000 perm   17 sec   (4621 perm/sec)   p_kst 2.662500e-03   p_cons 9.437500e-03   p_joint 1.100000e-03

Joint ci ratio: 2.204789e-01	ci left: 3.114190e-03	ci right 3.896128e-03	k: 314	n:90000
Cons ci ratio: 1.444953e-01	ci left: 7.524739e-03	ci right 8.707295e-03	k: 729	n:90000
KS ci ratio: 2.500971e-01	ci left: 2.381960e-03	ci right 3.072934e-03	k: 244	n:90000
KIAA1804   90000 perm   20 sec   (4543 perm/sec)   p_kst 2.711111e-03   p_cons 8.100000e-03   p_joint 3.488889e-03

Joint ci ratio: 2.286720e-01	ci left: 2.595060e-03	ci right 3.274279e-03	k: 292	n:100000
Cons ci ratio: 1.375179e-01	ci left: 7.505458e-03	ci right 8.623359e-03	k: 805	n:100000
KS ci ratio: 2.395784e-01	ci left: 2.350267e-03	ci right 2.999115e-03	k: 266	n:100000
KIAA1804   100000 perm   22 sec   (4475 perm/sec)   p_kst 2.660000e-03   p_cons 8.050000e-03   p_joint 2.920000e-03

Joint ci ratio: 2.554382e-01	ci left: 1.863659e-03	ci right 2.417660e-03	k: 234	n:110000
Cons ci ratio: 1.312376e-01	ci left: 7.517191e-03	ci right 8.581719e-03	k: 884	n:110000
KS ci ratio: 2.290949e-01	ci left: 2.350541e-03	ci right 2.967056e-03	k: 291	n:110000
KIAA1804   110000 perm   25 sec   (4400 perm/sec)   p_kst 2.645455e-03   p_cons 8.036364e-03   p_joint 2.127273e-03

Joint ci ratio: 2.664810e-01	ci left: 1.560340e-03	ci right 2.047576e-03	k: 215	n:120000
Cons ci ratio: 1.247069e-01	ci left: 7.657126e-03	ci right 8.683523e-03	k: 979	n:120000
KS ci ratio: 2.216367e-01	ci left: 2.311917e-03	ci right 2.895868e-03	k: 311	n:120000
KIAA1804   120000 perm   28 sec   (4334 perm/sec)   p_kst 2.591667e-03   p_cons 8.158333e-03   p_joint 1.791667e-03

Joint ci ratio: 2.812284e-01	ci left: 1.282667e-03	ci right 1.709297e-03	k: 193	n:130000
Cons ci ratio: 1.207741e-01	ci left: 7.552741e-03	ci right 8.530933e-03	k: 1044	n:130000
KS ci ratio: 2.123128e-01	ci left: 2.337765e-03	ci right 2.900172e-03	k: 339	n:130000
KIAA1804   130000 perm   30 sec   (4271 perm/sec)   p_kst 2.607692e-03   p_cons 8.030769e-03   p_joint 1.484615e-03

Joint ci ratio: 2.703018e-01	ci left: 1.297435e-03	ci right 1.709369e-03	k: 209	n:140000
Cons ci ratio: 1.160375e-01	ci left: 7.616300e-03	ci right 8.561387e-03	k: 1131	n:140000
KS ci ratio: 2.101749e-01	ci left: 2.218122e-03	ci right 2.745679e-03	k: 346	n:140000
KIAA1804   140000 perm   33 sec   (4212 perm/sec)   p_kst 2.471429e-03   p_cons 8.078571e-03   p_joint 1.492857e-03

Joint ci ratio: 2.582780e-01	ci left: 1.335447e-03	ci right 1.737549e-03	k: 229	n:150000
Cons ci ratio: 1.122363e-01	ci left: 7.613702e-03	ci right 8.525467e-03	k: 1209	n:150000
KS ci ratio: 2.019044e-01	ci left: 2.253613e-03	ci right 2.765920e-03	k: 375	n:150000
KIAA1804   150000 perm   36 sec   (4155 perm/sec)   p_kst 2.500000e-03   p_cons 8.060000e-03   p_joint 1.526667e-03

Joint ci ratio: 2.560702e-01	ci left: 1.275365e-03	ci right 1.655568e-03	k: 233	n:160000
Cons ci ratio: 1.092139e-01	ci left: 7.551062e-03	ci right 8.429407e-03	k: 1277	n:160000
KS ci ratio: 1.960000e-01	ci left: 2.249351e-03	ci right 2.743951e-03	k: 398	n:160000
KIAA1804   160000 perm   39 sec   (4098 perm/sec)   p_kst 2.487500e-03   p_cons 7.981250e-03   p_joint 1.456250e-03

Joint ci ratio: 2.690580e-01	ci left: 1.079429e-03	ci right 1.420299e-03	k: 211	n:170000
Cons ci ratio: 1.053245e-01	ci left: 7.656461e-03	ci right 8.513384e-03	k: 1373	n:170000
KS ci ratio: 1.899095e-01	ci left: 2.262592e-03	ci right 2.742860e-03	k: 424	n:170000
KIAA1804   170000 perm   42 sec   (4040 perm/sec)   p_kst 2.494118e-03   p_cons 8.076471e-03   p_joint 1.241176e-03

Joint ci ratio: 2.600147e-01	ci left: 1.097270e-03	ci right 1.430238e-03	k: 226	n:180000
Cons ci ratio: 1.024929e-01	ci left: 7.647760e-03	ci right 8.479312e-03	k: 1450	n:180000
KS ci ratio: 1.831364e-01	ci left: 2.306376e-03	ci right 2.776541e-03	k: 456	n:180000
KIAA1804   180000 perm   45 sec   (3982 perm/sec)   p_kst 2.533333e-03   p_cons 8.055556e-03   p_joint 1.255556e-03

Joint ci ratio: 2.784363e-01	ci left: 8.971637e-04	ci right 1.192085e-03	k: 197	n:190000
Cons ci ratio: 1.003425e-01	ci left: 7.568399e-03	ci right 8.373037e-03	k: 1513	n:190000
KS ci ratio: 1.788830e-01	ci left: 2.295530e-03	ci right 2.751439e-03	k: 478	n:190000
KIAA1804   190000 perm   48 sec   (3922 perm/sec)   p_kst 2.515789e-03   p_cons 7.963158e-03   p_joint 1.036842e-03

Joint ci ratio: 2.888525e-01	ci left: 7.872762e-04	ci right 1.057526e-03	k: 183	n:200000
Cons ci ratio: 9.005448e-02	ci left: 8.962160e-03	ci right 9.812151e-03	k: 1876	n:200000
KS ci ratio: 1.756170e-01	ci left: 2.266758e-03	ci right 2.707860e-03	k: 496	n:200000
KIAA1804   200000 perm   52 sec   (3864 perm/sec)   p_kst 2.480000e-03   p_cons 9.380000e-03   p_joint 9.150000e-04

Joint ci ratio: 2.850090e-01	ci left: 7.718822e-04	ci right 1.032688e-03	k: 188	n:210000
Cons ci ratio: 8.745627e-02	ci left: 9.061563e-03	ci right 9.894918e-03	k: 1989	n:210000
KS ci ratio: 1.725235e-01	ci left: 2.240794e-03	ci right 2.668363e-03	k: 514	n:210000
KIAA1804   210000 perm   55 sec   (3810 perm/sec)   p_kst 2.447619e-03   p_cons 9.471429e-03   p_joint 8.952381e-04

Joint ci ratio: 2.770592e-01	ci left: 7.832743e-04	ci right 1.039261e-03	k: 199	n:220000
Cons ci ratio: 8.548200e-02	ci left: 9.063260e-03	ci right 9.877016e-03	k: 2082	n:220000
KS ci ratio: 1.687960e-01	ci left: 2.239020e-03	ci right 2.656080e-03	k: 537	n:220000
KIAA1804   220000 perm   59 sec   (3748 perm/sec)   p_kst 2.440909e-03   p_cons 9.463636e-03   p_joint 9.045455e-04

Joint ci ratio: 2.366742e-01	ci left: 1.050389e-03	ci right 1.336334e-03	k: 273	n:230000
Cons ci ratio: 8.346159e-02	ci left: 9.103323e-03	ci right 9.900416e-03	k: 2184	n:230000
KS ci ratio: 1.651527e-01	ci left: 2.241659e-03	ci right 2.649303e-03	k: 561	n:230000
KIAA1804   230000 perm   62 sec   (3697 perm/sec)   p_kst 2.439130e-03   p_cons 9.495652e-03   p_joint 1.186957e-03

Joint ci ratio: 2.312514e-01	ci left: 1.057615e-03	ci right 1.337988e-03	k: 286	n:240000
Cons ci ratio: 8.147015e-02	ci left: 9.164749e-03	ci right 9.947164e-03	k: 2292	n:240000
KS ci ratio: 1.624317e-01	ci left: 2.224176e-03	ci right 2.621326e-03	k: 580	n:240000
KIAA1804   240000 perm   66 sec   (3644 perm/sec)   p_kst 2.416667e-03   p_cons 9.550000e-03   p_joint 1.191667e-03

Joint ci ratio: 1.699324e-01	ci left: 1.943499e-03	ci right 2.308198e-03	k: 530	n:250000
Cons ci ratio: 7.979953e-02	ci left: 9.178338e-03	ci right 9.945097e-03	k: 2389	n:250000
KS ci ratio: 1.576181e-01	ci left: 2.273448e-03	ci right 2.666228e-03	k: 616	n:250000
KIAA1804   250000 perm   70 sec   (3587 perm/sec)   p_kst 2.464000e-03   p_cons 9.556000e-03   p_joint 2.120000e-03

Joint ci ratio: 1.675840e-01	ci left: 1.924003e-03	ci right 2.279550e-03	k: 545	n:260000
Cons ci ratio: 7.845089e-02	ci left: 9.138231e-03	ci right 9.888148e-03	k: 2472	n:260000
KS ci ratio: 1.562357e-01	ci left: 2.226650e-03	ci right 2.607654e-03	k: 627	n:260000
KIAA1804   260000 perm   74 sec   (3533 perm/sec)   p_kst 2.411538e-03   p_cons 9.507692e-03   p_joint 2.096154e-03

Joint ci ratio: 1.650357e-01	ci left: 1.913085e-03	ci right 2.260705e-03	k: 562	n:270000
Cons ci ratio: 7.703158e-02	ci left: 9.133894e-03	ci right 9.869286e-03	k: 2564	n:270000
KS ci ratio: 1.533333e-01	ci left: 2.229628e-03	ci right 2.603403e-03	k: 651	n:270000
KIAA1804   270000 perm   77 sec   (3487 perm/sec)   p_kst 2.411111e-03   p_cons 9.496296e-03   p_joint 2.081481e-03

Joint ci ratio: 1.621804e-01	ci left: 1.913264e-03	ci right 2.254316e-03	k: 582	n:280000
Cons ci ratio: 7.548610e-02	ci left: 9.179043e-03	ci right 9.902592e-03	k: 2670	n:280000
KS ci ratio: 1.506986e-01	ci left: 2.229016e-03	ci right 2.595690e-03	k: 674	n:280000
KIAA1804   280000 perm   81 sec   (3440 perm/sec)   p_kst 2.407143e-03   p_cons 9.535714e-03   p_joint 2.078571e-03

Joint ci ratio: 1.612193e-01	ci left: 1.870448e-03	ci right 2.201699e-03	k: 589	n:290000
Cons ci ratio: 7.412443e-02	ci left: 9.197521e-03	ci right 9.908884e-03	k: 2769	n:290000
KS ci ratio: 1.492710e-01	ci left: 2.195296e-03	ci right 2.552696e-03	k: 687	n:290000
KIAA1804   290000 perm   85 sec   (3398 perm/sec)   p_kst 2.368966e-03   p_cons 9.548276e-03   p_joint 2.031034e-03

Joint ci ratio: 1.598730e-01	ci left: 1.840091e-03	ci right 2.162984e-03	k: 599	n:300000
Cons ci ratio: 7.314340e-02	ci left: 9.136323e-03	ci right 9.833202e-03	k: 2844	n:300000
KS ci ratio: 1.471484e-01	ci left: 2.186313e-03	ci right 2.536744e-03	k: 707	n:300000
KIAA1804   300000 perm   89 sec   (3358 perm/sec)   p_kst 2.356667e-03   p_cons 9.480000e-03   p_joint 1.996667e-03

Joint ci ratio: 1.586901e-01	ci left: 1.808606e-03	ci right 2.123402e-03	k: 608	n:310000
Cons ci ratio: 7.203857e-02	ci left: 9.120318e-03	ci right 9.805029e-03	k: 2932	n:310000
KS ci ratio: 1.455152e-01	ci left: 2.165508e-03	ci right 2.508417e-03	k: 723	n:310000
KIAA1804   310000 perm   93 sec   (3317 perm/sec)   p_kst 2.332258e-03   p_cons 9.458065e-03   p_joint 1.961290e-03

Joint ci ratio: 1.560225e-01	ci left: 1.815128e-03	ci right 2.125252e-03	k: 629	n:320000
Cons ci ratio: 7.092311e-02	ci left: 9.120738e-03	ci right 9.794441e-03	k: 3025	n:320000
KS ci ratio: 1.429701e-01	ci left: 2.176155e-03	ci right 2.514208e-03	k: 749	n:320000
KIAA1804   320000 perm   98 sec   (3278 perm/sec)   p_kst 2.340625e-03   p_cons 9.453125e-03   p_joint 1.965625e-03

Joint ci ratio: 1.565258e-01	ci left: 1.748473e-03	ci right 2.048261e-03	k: 625	n:330000
Cons ci ratio: 6.986922e-02	ci left: 9.118231e-03	ci right 9.781335e-03	k: 3117	n:330000
KS ci ratio: 1.399229e-01	ci left: 2.206675e-03	ci right 2.541554e-03	k: 782	n:330000
KIAA1804   330000 perm   102 sec   (3241 perm/sec)   p_kst 2.369697e-03   p_cons 9.445455e-03   p_joint 1.893939e-03

Joint ci ratio: 1.545637e-01	ci left: 1.742274e-03	ci right 2.036908e-03	k: 641	n:340000
Cons ci ratio: 6.887179e-02	ci left: 9.113051e-03	ci right 9.765939e-03	k: 3208	n:340000
KS ci ratio: 1.377410e-01	ci left: 2.212748e-03	ci right 2.542883e-03	k: 807	n:340000
KIAA1804   340000 perm   106 sec   (3207 perm/sec)   p_kst 2.373529e-03   p_cons 9.435294e-03   p_joint 1.885294e-03

Joint ci ratio: 1.517521e-01	ci left: 1.758439e-03	ci right 2.049906e-03	k: 665	n:350000
Cons ci ratio: 6.803044e-02	ci left: 9.077332e-03	ci right 9.719402e-03	k: 3288	n:350000
KS ci ratio: 1.350903e-01	ci left: 2.237837e-03	ci right 2.564774e-03	k: 839	n:350000
KIAA1804   350000 perm   110 sec   (3172 perm/sec)   p_kst 2.397143e-03   p_cons 9.394286e-03   p_joint 1.900000e-03

Joint ci ratio: 1.495234e-01	ci left: 1.763055e-03	ci right 2.050612e-03	k: 685	n:360000
Cons ci ratio: 6.704864e-02	ci left: 9.090079e-03	ci right 9.723411e-03	k: 3385	n:360000
KS ci ratio: 1.331236e-01	ci left: 2.242790e-03	ci right 2.565303e-03	k: 864	n:360000
KIAA1804   360000 perm   115 sec   (3137 perm/sec)   p_kst 2.400000e-03   p_cons 9.402778e-03   p_joint 1.902778e-03

Joint ci ratio: 1.467666e-01	ci left: 1.783072e-03	ci right 2.068062e-03	k: 711	n:370000
Cons ci ratio: 6.600301e-02	ci left: 9.131444e-03	ci right 9.757356e-03	k: 3493	n:370000
KS ci ratio: 1.313144e-01	ci left: 2.244894e-03	ci right 2.562979e-03	k: 888	n:370000
KIAA1804   370000 perm   119 sec   (3099 perm/sec)   p_kst 2.400000e-03   p_cons 9.440541e-03   p_joint 1.921622e-03

Joint ci ratio: 1.465642e-01	ci left: 1.741217e-03	ci right 2.019099e-03	k: 713	n:380000
Cons ci ratio: 6.513272e-02	ci left: 9.134456e-03	ci right 9.752007e-03	k: 3587	n:380000
KS ci ratio: 1.297909e-01	ci left: 2.239275e-03	ci right 2.552600e-03	k: 909	n:380000
KIAA1804   380000 perm   124 sec   (3066 perm/sec)   p_kst 2.392105e-03   p_cons 9.439474e-03   p_joint 1.876316e-03

Joint ci ratio: 1.481349e-01	ci left: 1.659521e-03	ci right 1.927455e-03	k: 698	n:390000
Cons ci ratio: 6.436661e-02	ci left: 9.117179e-03	ci right 9.726041e-03	k: 3673	n:390000
KS ci ratio: 1.274305e-01	ci left: 2.266235e-03	ci right 2.577129e-03	k: 943	n:390000
KIAA1804   390000 perm   129 sec   (3031 perm/sec)   p_kst 2.417949e-03   p_cons 9.417949e-03   p_joint 1.789744e-03

Joint ci ratio: 1.547064e-01	ci left: 1.478514e-03	ci right 1.728795e-03	k: 640	n:400000
Cons ci ratio: 6.358424e-02	ci left: 9.113109e-03	ci right 9.714030e-03	k: 3764	n:400000
KS ci ratio: 1.262336e-01	ci left: 2.253150e-03	ci right 2.559129e-03	k: 961	n:400000
KIAA1804   400000 perm   133 sec   (3001 perm/sec)   p_kst 2.402500e-03   p_cons 9.410000e-03   p_joint 1.600000e-03

Joint ci ratio: 1.530445e-01	ci left: 1.475284e-03	ci right 1.722090e-03	k: 654	n:410000
Cons ci ratio: 6.282150e-02	ci left: 9.111682e-03	ci right 9.705039e-03	k: 3856	n:410000
KS ci ratio: 1.248148e-01	ci left: 2.250169e-03	ci right 2.552054e-03	k: 983	n:410000
KIAA1804   410000 perm   138 sec   (2970 perm/sec)   p_kst 2.397561e-03   p_cons 9.404878e-03   p_joint 1.595122e-03

Joint ci ratio: 1.561834e-01	ci left: 1.380643e-03	ci right 1.616796e-03	k: 628	n:420000
Cons ci ratio: 6.206970e-02	ci left: 9.115052e-03	ci right 9.701270e-03	k: 3950	n:420000
KS ci ratio: 1.235660e-01	ci left: 2.242732e-03	ci right 2.540390e-03	k: 1003	n:420000
KIAA1804   420000 perm   143 sec   (2940 perm/sec)   p_kst 2.388095e-03   p_cons 9.404762e-03   p_joint 1.495238e-03

Joint ci ratio: 1.582142e-01	ci left: 1.312785e-03	ci right 1.540529e-03	k: 612	n:430000
Cons ci ratio: 6.132131e-02	ci left: 9.125177e-03	ci right 9.704719e-03	k: 4047	n:430000
KS ci ratio: 1.222343e-01	ci left: 2.240165e-03	ci right 2.534046e-03	k: 1025	n:430000
KIAA1804   430000 perm   148 sec   (2910 perm/sec)   p_kst 2.383721e-03   p_cons 9.411628e-03   p_joint 1.423256e-03

Joint ci ratio: 1.797646e-01	ci left: 9.825079e-04	ci right 1.178703e-03	k: 474	n:440000
Cons ci ratio: 6.069551e-02	ci left: 9.105780e-03	ci right 9.677981e-03	k: 4131	n:440000
KS ci ratio: 1.206566e-01	ci left: 2.248753e-03	ci right 2.539680e-03	k: 1052	n:440000
KIAA1804   440000 perm   153 sec   (2877 perm/sec)   p_kst 2.390909e-03   p_cons 9.388636e-03   p_joint 1.077273e-03

Joint ci ratio: 1.822811e-01	ci left: 9.330923e-04	ci right 1.122316e-03	k: 461	n:450000
Cons ci ratio: 6.000235e-02	ci left: 9.113545e-03	ci right 9.679466e-03	k: 4227	n:450000
KS ci ratio: 1.193047e-01	ci left: 2.250513e-03	ci right 2.538176e-03	k: 1076	n:450000
KIAA1804   450000 perm   158 sec   (2849 perm/sec)   p_kst 2.391111e-03   p_cons 9.393333e-03   p_joint 1.024444e-03

Joint ci ratio: 1.799586e-01	ci left: 9.377121e-04	ci right 1.125186e-03	k: 473	n:460000
Cons ci ratio: 5.939483e-02	ci left: 9.101730e-03	ci right 9.660998e-03	k: 4314	n:460000
KS ci ratio: 1.174636e-01	ci left: 2.273315e-03	ci right 2.559097e-03	k: 1110	n:460000
KIAA1804   460000 perm   163 sec   (2821 perm/sec)   p_kst 2.413043e-03   p_cons 9.378261e-03   p_joint 1.028261e-03

Joint ci ratio: 1.786449e-01	ci left: 9.319857e-04	ci right 1.116807e-03	k: 480	n:470000
Cons ci ratio: 5.868441e-02	ci left: 9.128185e-03	ci right 9.682143e-03	k: 4419	n:470000
KS ci ratio: 1.165243e-01	ci left: 2.262123e-03	ci right 2.544067e-03	k: 1128	n:470000
KIAA1804   470000 perm   168 sec   (2795 perm/sec)   p_kst 2.400000e-03   p_cons 9.402128e-03   p_joint 1.021277e-03

Joint ci ratio: 1.768164e-01	ci left: 9.324759e-04	ci right 1.115300e-03	k: 490	n:480000
Cons ci ratio: 5.806368e-02	ci left: 9.133043e-03	ci right 9.681236e-03	k: 4514	n:480000
KS ci ratio: 1.152551e-01	ci left: 2.265569e-03	ci right 2.544658e-03	k: 1153	n:480000
KIAA1804   480000 perm   173 sec   (2769 perm/sec)   p_kst 2.402083e-03   p_cons 9.404167e-03   p_joint 1.020833e-03

Joint ci ratio: 1.757467e-01	ci left: 9.251501e-04	ci right 1.105324e-03	k: 496	n:490000
Cons ci ratio: 5.755684e-02	ci left: 9.107556e-03	ci right 9.649289e-03	k: 4594	n:490000
KS ci ratio: 1.141722e-01	ci left: 2.262942e-03	ci right 2.538912e-03	k: 1175	n:490000
KIAA1804   490000 perm   179 sec   (2743 perm/sec)   p_kst 2.397959e-03   p_cons 9.375510e-03   p_joint 1.012245e-03

Joint ci ratio: 1.729832e-01	ci left: 9.372511e-04	ci right 1.116612e-03	k: 512	n:500000
Cons ci ratio: 5.694635e-02	ci left: 9.120572e-03	ci right 9.657136e-03	k: 4693	n:500000
KS ci ratio: 1.127894e-01	ci left: 2.274038e-03	ci right 2.547779e-03	k: 1204	n:500000
KIAA1804   500000 perm   184 sec   (2718 perm/sec)   p_kst 2.408000e-03   p_cons 9.386000e-03   p_joint 1.024000e-03

Joint ci ratio: 1.718155e-01	ci left: 9.320067e-04	ci right 1.109035e-03	k: 519	n:510000
Cons ci ratio: 5.643219e-02	ci left: 9.107973e-03	ci right 9.638799e-03	k: 4779	n:510000
KS ci ratio: 1.115009e-01	ci left: 2.282812e-03	ci right 2.554263e-03	k: 1232	n:510000
KIAA1804   510000 perm   189 sec   (2693 perm/sec)   p_kst 2.415686e-03   p_cons 9.370588e-03   p_joint 1.017647e-03

Joint ci ratio: 1.380547e-01	ci left: 1.441187e-03	ci right 1.656735e-03	k: 804	n:520000
Cons ci ratio: 5.592590e-02	ci left: 9.097776e-03	ci right 9.623097e-03	k: 4866	n:520000
KS ci ratio: 1.104754e-01	ci left: 2.281914e-03	ci right 2.550601e-03	k: 1255	n:520000
KIAA1804   520000 perm   195 sec   (2669 perm/sec)   p_kst 2.413462e-03   p_cons 9.357692e-03   p_joint 1.546154e-03

Joint ci ratio: 1.423729e-01	ci left: 1.326599e-03	ci right 1.531743e-03	k: 756	n:530000
Cons ci ratio: 5.527554e-02	ci left: 9.140090e-03	ci right 9.661521e-03	k: 4981	n:530000
KS ci ratio: 1.095206e-01	ci left: 2.279226e-03	ci right 2.545128e-03	k: 1277	n:530000
KIAA1804   530000 perm   201 sec   (2643 perm/sec)   p_kst 2.409434e-03   p_cons 9.398113e-03   p_joint 1.426415e-03

Joint ci ratio: 1.406185e-01	ci left: 1.335973e-03	ci right 1.539807e-03	k: 775	n:540000
Cons ci ratio: 5.477223e-02	ci left: 9.138855e-03	ci right 9.655318e-03	k: 5073	n:540000
KS ci ratio: 1.084231e-01	ci left: 2.283855e-03	ci right 2.547455e-03	k: 1303	n:540000
KIAA1804   540000 perm   206 sec   (2618 perm/sec)   p_kst 2.412963e-03   p_cons 9.394444e-03   p_joint 1.435185e-03

Joint ci ratio: 1.387528e-01	ci left: 1.348530e-03	ci right 1.551325e-03	k: 796	n:550000
Cons ci ratio: 5.433554e-02	ci left: 9.119748e-03	ci right 9.630894e-03	k: 5155	n:550000
KS ci ratio: 1.073984e-01	ci left: 2.286558e-03	ci right 2.547819e-03	k: 1328	n:550000
KIAA1804   550000 perm   212 sec   (2594 perm/sec)   p_kst 2.414545e-03   p_cons 9.372727e-03   p_joint 1.447273e-03

Joint ci ratio: 1.374651e-01	ci left: 1.350310e-03	ci right 1.551333e-03	k: 811	n:560000
Cons ci ratio: 5.387280e-02	ci left: 9.113674e-03	ci right 9.619993e-03	k: 5244	n:560000
KS ci ratio: 1.065206e-01	ci left: 2.283961e-03	ci right 2.542658e-03	k: 1350	n:560000
KIAA1804   560000 perm   218 sec   (2570 perm/sec)   p_kst 2.410714e-03   p_cons 9.364286e-03   p_joint 1.448214e-03

Joint ci ratio: 1.366270e-01	ci left: 1.343562e-03	ci right 1.542262e-03	k: 821	n:570000
Cons ci ratio: 5.337121e-02	ci left: 9.125141e-03	ci right 9.627233e-03	k: 5343	n:570000
KS ci ratio: 1.058961e-01	ci left: 2.271215e-03	ci right 2.526867e-03	k: 1366	n:570000
KIAA1804   570000 perm   224 sec   (2547 perm/sec)   p_kst 2.396491e-03   p_cons 9.373684e-03   p_joint 1.440351e-03

Joint ci ratio: 1.357223e-01	ci left: 1.338717e-03	ci right 1.535283e-03	k: 832	n:580000
Cons ci ratio: 5.286866e-02	ci left: 9.141339e-03	ci right 9.639442e-03	k: 5445	n:580000
KS ci ratio: 1.051302e-01	ci left: 2.265629e-03	ci right 2.518693e-03	k: 1386	n:580000
KIAA1804   580000 perm   230 sec   (2524 perm/sec)   p_kst 2.389655e-03   p_cons 9.387931e-03   p_joint 1.434483e-03

Joint ci ratio: 1.347554e-01	ci left: 1.335677e-03	ci right 1.530288e-03	k: 844	n:590000
Cons ci ratio: 5.249479e-02	ci left: 9.116860e-03	ci right 9.610009e-03	k: 5523	n:590000
KS ci ratio: 1.040845e-01	ci left: 2.273445e-03	ci right 2.524702e-03	k: 1414	n:590000
KIAA1804   590000 perm   236 sec   (2498 perm/sec)   p_kst 2.396610e-03   p_cons 9.361017e-03   p_joint 1.430508e-03

Joint ci ratio: 1.331878e-01	ci left: 1.345632e-03	ci right 1.539233e-03	k: 864	n:600000
Cons ci ratio: 5.200239e-02	ci left: 9.137629e-03	ci right 9.627126e-03	k: 5628	n:600000
KS ci ratio: 1.031411e-01	ci left: 2.277765e-03	ci right 2.527079e-03	k: 1440	n:600000
KIAA1804   600000 perm   242 sec   (2477 perm/sec)   p_kst 2.400000e-03   p_cons 9.380000e-03   p_joint 1.440000e-03

Joint ci ratio: 1.323493e-01	ci left: 1.341006e-03	ci right 1.532631e-03	k: 875	n:610000
Cons ci ratio: 5.157809e-02	ci left: 9.138316e-03	ci right 9.623737e-03	k: 5721	n:610000
KS ci ratio: 1.023628e-01	ci left: 2.275563e-03	ci right 2.522644e-03	k: 1462	n:610000
KIAA1804   610000 perm   248 sec   (2457 perm/sec)   p_kst 2.396721e-03   p_cons 9.378689e-03   p_joint 1.434426e-03

Joint ci ratio: 1.311568e-01	ci left: 1.344333e-03	ci right 1.534568e-03	k: 891	n:620000
Cons ci ratio: 5.112409e-02	ci left: 9.153330e-03	ci right 9.635142e-03	k: 5823	n:620000
KS ci ratio: 1.014650e-01	ci left: 2.279727e-03	ci right 2.524960e-03	k: 1488	n:620000
KIAA1804   620000 perm   255 sec   (2436 perm/sec)   p_kst 2.400000e-03   p_cons 9.391935e-03   p_joint 1.437097e-03

Joint ci ratio: 1.498034e-01	ci left: 1.004375e-03	ci right 1.168522e-03	k: 683	n:630000
Cons ci ratio: 5.075976e-02	ci left: 9.139672e-03	ci right 9.617237e-03	k: 5907	n:630000
KS ci ratio: 1.006904e-01	ci left: 2.279126e-03	ci right 2.522311e-03	k: 1511	n:630000
KIAA1804   630000 perm   261 sec   (2415 perm/sec)   p_kst 2.398413e-03   p_cons 9.376190e-03   p_joint 1.084127e-03

Joint ci ratio: 1.488277e-01	ci left: 1.002219e-03	ci right 1.164852e-03	k: 692	n:640000
Cons ci ratio: 5.041159e-02	ci left: 9.123367e-03	ci right 9.596715e-03	k: 5989	n:640000
KS ci ratio: 1.002941e-01	ci left: 2.261792e-03	ci right 2.502123e-03	k: 1523	n:640000
KIAA1804   640000 perm   267 sec   (2395 perm/sec)   p_kst 2.379687e-03   p_cons 9.357812e-03   p_joint 1.081250e-03

Joint ci ratio: 1.477655e-01	ci left: 1.001614e-03	ci right 1.162886e-03	k: 702	n:650000
Cons ci ratio: 5.000403e-02	ci left: 9.131885e-03	ci right 9.601734e-03	k: 6087	n:650000
KS ci ratio: 9.964274e-02	ci left: 2.256995e-03	ci right 2.495167e-03	k: 1543	n:650000
KIAA1804   650000 perm   274 sec   (2376 perm/sec)   p_kst 2.373846e-03   p_cons 9.364615e-03   p_joint 1.080000e-03

Joint ci ratio: 1.478721e-01	ci left: 9.849778e-04	ci right 1.143696e-03	k: 701	n:660000
Cons ci ratio: 4.955366e-02	ci left: 9.159615e-03	ci right 9.626525e-03	k: 6198	n:660000
KS ci ratio: 9.868812e-02	ci left: 2.267126e-03	ci right 2.503942e-03	k: 1573	n:660000
KIAA1804   660000 perm   280 sec   (2355 perm/sec)   p_kst 2.383333e-03   p_cons 9.390909e-03   p_joint 1.062121e-03

Joint ci ratio: 1.470369e-01	ci left: 9.817763e-04	ci right 1.139007e-03	k: 709	n:670000
Cons ci ratio: 4.924145e-02	ci left: 9.139356e-03	ci right 9.602214e-03	k: 6277	n:670000
KS ci ratio: 9.800572e-02	ci left: 2.265316e-03	ci right 2.500213e-03	k: 1595	n:670000
KIAA1804   670000 perm   287 sec   (2335 perm/sec)   p_kst 2.380597e-03   p_cons 9.368657e-03   p_joint 1.058209e-03

Joint ci ratio: 1.456080e-01	ci left: 9.871731e-04	ci right 1.143598e-03	k: 723	n:680000
Cons ci ratio: 4.887301e-02	ci left: 9.142946e-03	ci right 9.602424e-03	k: 6372	n:680000
KS ci ratio: 9.721689e-02	ci left: 2.269305e-03	ci right 2.502614e-03	k: 1621	n:680000
KIAA1804   680000 perm   294 sec   (2317 perm/sec)   p_kst 2.383824e-03   p_cons 9.370588e-03   p_joint 1.063235e-03

Joint ci ratio: 1.472469e-01	ci left: 9.505260e-04	ci right 1.102988e-03	k: 707	n:690000
Cons ci ratio: 4.853545e-02	ci left: 9.137854e-03	ci right 9.593816e-03	k: 6461	n:690000
KS ci ratio: 9.650553e-02	ci left: 2.270357e-03	ci right 2.501969e-03	k: 1645	n:690000
KIAA1804   690000 perm   300 sec   (2297 perm/sec)   p_kst 2.384058e-03   p_cons 9.363768e-03   p_joint 1.024638e-03

Joint ci ratio: 1.458119e-01	ci left: 9.562140e-04	ci right 1.107964e-03	k: 721	n:700000
Cons ci ratio: 4.823825e-02	ci left: 9.120214e-03	ci right 9.572432e-03	k: 6541	n:700000
KS ci ratio: 9.578082e-02	ci left: 2.272779e-03	ci right 2.502799e-03	k: 1670	n:700000
KIAA1804   700000 perm   307 sec   (2278 perm/sec)   p_kst 2.385714e-03   p_cons 9.344286e-03   p_joint 1.030000e-03

Joint ci ratio: 1.444181e-01	ci left: 9.617488e-04	ci right 1.112792e-03	k: 735	n:710000
Cons ci ratio: 4.792453e-02	ci left: 9.111430e-03	ci right 9.560193e-03	k: 6627	n:710000
KS ci ratio: 9.498802e-02	ci left: 2.279264e-03	ci right 2.507925e-03	k: 1698	n:710000
KIAA1804   710000 perm   314 sec   (2259 perm/sec)   p_kst 2.391549e-03   p_cons 9.333803e-03   p_joint 1.035211e-03

Joint ci ratio: 1.465268e-01	ci left: 9.202846e-04	ci right 1.067111e-03	k: 714	n:720000
Cons ci ratio: 4.760970e-02	ci left: 9.105644e-03	ci right 9.551095e-03	k: 6715	n:720000
KS ci ratio: 9.424194e-02	ci left: 2.284220e-03	ci right 2.511479e-03	k: 1725	n:720000
KIAA1804   720000 perm   321 sec   (2241 perm/sec)   p_kst 2.395833e-03   p_cons 9.326389e-03   p_joint 9.916667e-04

Joint ci ratio: 1.454124e-01	ci left: 9.221962e-04	ci right 1.068112e-03	k: 725	n:730000
Cons ci ratio: 4.727995e-02	ci left: 9.108149e-03	ci right 9.550552e-03	k: 6809	n:730000
KS ci ratio: 9.353991e-02	ci left: 2.287710e-03	ci right 2.513528e-03	k: 1751	n:730000
KIAA1804   730000 perm   328 sec   (2223 perm/sec)   p_kst 2.398630e-03   p_cons 9.327397e-03   p_joint 9.931507e-04

Joint ci ratio: 1.475653e-01	ci left: 8.823945e-04	ci right 1.024262e-03	k: 704	n:740000
Cons ci ratio: 4.692609e-02	ci left: 9.122617e-03	ci right 9.562317e-03	k: 6912	n:740000
KS ci ratio: 9.290573e-02	ci left: 2.288471e-03	ci right 2.512750e-03	k: 1775	n:740000
KIAA1804   740000 perm   335 sec   (2207 perm/sec)   p_kst 2.398649e-03   p_cons 9.340541e-03   p_joint 9.513514e-04

Joint ci ratio: 1.462230e-01	ci left: 8.873256e-04	ci right 1.028575e-03	k: 717	n:750000
Cons ci ratio: 5.071174e-02	ci left: 7.703510e-03	ci right 8.105638e-03	k: 5927	n:750000
KS ci ratio: 9.233572e-02	ci left: 2.286612e-03	ci right 2.509259e-03	k: 1797	n:750000
KIAA1804   750000 perm   342 sec   (2190 perm/sec)   p_kst 2.396000e-03   p_cons 7.902667e-03   p_joint 9.560000e-04

Joint ci ratio: 1.457169e-01	ci left: 8.819888e-04	ci right 1.021860e-03	k: 722	n:760000
Cons ci ratio: 5.037718e-02	ci left: 7.704782e-03	ci right 8.104246e-03	k: 6006	n:760000
KS ci ratio: 9.177607e-02	ci left: 2.284806e-03	ci right 2.505856e-03	k: 1819	n:760000
KIAA1804   760000 perm   350 sec   (2174 perm/sec)   p_kst 2.393421e-03   p_cons 7.902632e-03   p_joint 9.500000e-04

Joint ci ratio: 1.449175e-01	ci left: 8.805462e-04	ci right 1.019356e-03	k: 730	n:770000
Cons ci ratio: 5.006988e-02	ci left: 7.699616e-03	ci right 8.096307e-03	k: 6080	n:770000
KS ci ratio: 9.122647e-02	ci left: 2.283051e-03	ci right 2.502538e-03	k: 1841	n:770000
KIAA1804   770000 perm   357 sec   (2158 perm/sec)   p_kst 2.390909e-03   p_cons 7.896104e-03   p_joint 9.480519e-04

Joint ci ratio: 1.443267e-01	ci left: 8.766710e-04	ci right 1.014258e-03	k: 736	n:780000
Cons ci ratio: 4.971525e-02	ci left: 7.711051e-03	ci right 8.105437e-03	k: 6167	n:780000
KS ci ratio: 9.071103e-02	ci left: 2.280091e-03	ci right 2.497990e-03	k: 1862	n:780000
KIAA1804   780000 perm   364 sec   (2141 perm/sec)   p_kst 2.387179e-03   p_cons 7.906410e-03   p_joint 9.435897e-04

Joint ci ratio: 1.435499e-01	ci left: 8.753357e-04	ci right 1.011911e-03	k: 744	n:790000
Cons ci ratio: 4.945180e-02	ci left: 7.695950e-03	ci right 8.087418e-03	k: 6233	n:790000
KS ci ratio: 9.013232e-02	ci left: 2.280922e-03	ci right 2.497436e-03	k: 1886	n:790000
KIAA1804   790000 perm   372 sec   (2126 perm/sec)   p_kst 2.387342e-03   p_cons 7.889873e-03   p_joint 9.417722e-04

Joint ci ratio: 1.425016e-01	ci left: 8.776521e-04	ci right 1.013503e-03	k: 755	n:800000
Cons ci ratio: 4.917675e-02	ci left: 7.686171e-03	ci right 8.074905e-03	k: 6303	n:800000
KS ci ratio: 8.935388e-02	ci left: 2.292735e-03	ci right 2.508393e-03	k: 1919	n:800000
KIAA1804   800000 perm   379 sec   (2110 perm/sec)   p_kst 2.398750e-03   p_cons 7.878750e-03   p_joint 9.437500e-04

Joint ci ratio: 1.416609e-01	ci left: 8.775330e-04	ci right 1.012497e-03	k: 764	n:810000
Cons ci ratio: 4.885605e-02	ci left: 7.692494e-03	ci right 8.078939e-03	k: 6386	n:810000
KS ci ratio: 8.866355e-02	ci left: 2.300643e-03	ci right 2.515286e-03	k: 1949	n:810000
KIAA1804   810000 perm   387 sec   (2094 perm/sec)   p_kst 2.406173e-03   p_cons 7.883951e-03   p_joint 9.432099e-04

Joint ci ratio: 1.275793e-01	ci left: 1.076620e-03	ci right 1.224501e-03	k: 942	n:820000
Cons ci ratio: 4.851132e-02	ci left: 7.708309e-03	ci right 8.092741e-03	k: 6477	n:820000
KS ci ratio: 8.803355e-02	ci left: 2.305979e-03	ci right 2.519512e-03	k: 1977	n:820000
KIAA1804   820000 perm   394 sec   (2079 perm/sec)   p_kst 2.410976e-03   p_cons 7.898780e-03   p_joint 1.148780e-03

Joint ci ratio: 1.270418e-01	ci left: 1.072981e-03	ci right 1.219693e-03	k: 950	n:830000
Cons ci ratio: 4.816639e-02	ci left: 7.726133e-03	ci right 8.108638e-03	k: 6570	n:830000
KS ci ratio: 8.739496e-02	ci left: 2.312369e-03	ci right 2.524862e-03	k: 2006	n:830000
KIAA1804   830000 perm   402 sec   (2065 perm/sec)   p_kst 2.416867e-03   p_cons 7.915663e-03   p_joint 1.144578e-03

Joint ci ratio: 1.303070e-01	ci left: 1.006053e-03	ci right 1.147424e-03	k: 903	n:840000
Cons ci ratio: 4.785406e-02	ci left: 7.735308e-03	ci right 8.115716e-03	k: 6656	n:840000
KS ci ratio: 8.700600e-02	ci left: 2.305802e-03	ci right 2.516700e-03	k: 2024	n:840000
KIAA1804   840000 perm   410 sec   (2050 perm/sec)   p_kst 2.409524e-03   p_cons 7.923810e-03   p_joint 1.075000e-03

Joint ci ratio: 1.299486e-01	ci left: 9.999078e-04	ci right 1.139999e-03	k: 908	n:850000
Cons ci ratio: 4.753707e-02	ci left: 7.747763e-03	ci right 8.126190e-03	k: 6745	n:850000
KS ci ratio: 8.668600e-02	ci left: 2.295938e-03	ci right 2.505123e-03	k: 2039	n:850000
KIAA1804   850000 perm   418 sec   (2035 perm/sec)   p_kst 2.398824e-03   p_cons 7.935294e-03   p_joint 1.068235e-03

Joint ci ratio: 1.330630e-01	ci left: 9.410483e-04	ci right 1.076302e-03	k: 866	n:860000
Cons ci ratio: 4.728560e-02	ci left: 7.740401e-03	ci right 8.116413e-03	k: 6817	n:860000
KS ci ratio: 8.611782e-02	ci left: 2.299959e-03	ci right 2.508067e-03	k: 2066	n:860000
KIAA1804   860000 perm   426 sec   (2021 perm/sec)   p_kst 2.402326e-03   p_cons 7.926744e-03   p_joint 1.006977e-03

Joint ci ratio: 1.326052e-01	ci left: 9.368989e-04	ci right 1.071057e-03	k: 872	n:870000
Cons ci ratio: 4.701746e-02	ci left: 7.740029e-03	ci right 8.113834e-03	k: 6895	n:870000
KS ci ratio: 8.572498e-02	ci left: 2.294892e-03	ci right 2.501547e-03	k: 2085	n:870000
KIAA1804   870000 perm   434 sec   (2006 perm/sec)   p_kst 2.396552e-03   p_cons 7.925287e-03   p_joint 1.002299e-03

Joint ci ratio: 1.314061e-01	ci left: 9.438340e-04	ci right 1.077667e-03	k: 888	n:880000
Cons ci ratio: 4.678426e-02	ci left: 7.729562e-03	ci right 8.100960e-03	k: 6964	n:880000
KS ci ratio: 8.509467e-02	ci left: 2.303289e-03	ci right 2.509099e-03	k: 2116	n:880000
KIAA1804   880000 perm   442 sec   (1993 perm/sec)   p_kst 2.404545e-03   p_cons 7.913636e-03   p_joint 1.009091e-03

Joint ci ratio: 1.303110e-01	ci left: 9.495315e-04	ci right 1.082964e-03	k: 903	n:890000
Cons ci ratio: 4.649125e-02	ci left: 7.740438e-03	ci right 8.109967e-03	k: 7052	n:890000
KS ci ratio: 8.447807e-02	ci left: 2.311503e-03	ci right 2.516477e-03	k: 2147	n:890000
KIAA1804   890000 perm   450 sec   (1978 perm/sec)   p_kst 2.412360e-03   p_cons 7.923596e-03   p_joint 1.014607e-03

Joint ci ratio: 1.295252e-01	ci left: 9.508061e-04	ci right 1.083550e-03	k: 914	n:900000
Cons ci ratio: 4.623958e-02	ci left: 7.738996e-03	ci right 8.106403e-03	k: 7129	n:900000
KS ci ratio: 8.385539e-02	ci left: 2.320627e-03	ci right 2.524819e-03	k: 2179	n:900000
KIAA1804   900000 perm   458 sec   (1965 perm/sec)   p_kst 2.421111e-03   p_cons 7.921111e-03   p_joint 1.015556e-03

Joint ci ratio: 1.288930e-01	ci left: 9.499281e-04	ci right 1.081853e-03	k: 923	n:910000
Cons ci ratio: 4.601772e-02	ci left: 7.728901e-03	ci right 8.094022e-03	k: 7198	n:910000
KS ci ratio: 8.341656e-02	ci left: 2.319871e-03	ci right 2.522877e-03	k: 2202	n:910000
KIAA1804   910000 perm   466 sec   (1951 perm/sec)   p_kst 2.419780e-03   p_cons 7.909890e-03   p_joint 1.014286e-03

Joint ci ratio: 1.279955e-01	ci left: 9.532793e-04	ci right 1.084677e-03	k: 936	n:920000
Cons ci ratio: 4.575145e-02	ci left: 7.735149e-03	ci right 8.098394e-03	k: 7282	n:920000
KS ci ratio: 8.294720e-02	ci left: 2.321264e-03	ci right 2.523193e-03	k: 2227	n:920000
KIAA1804   920000 perm   475 sec   (1938 perm/sec)   p_kst 2.420652e-03   p_cons 7.915217e-03   p_joint 1.017391e-03

Joint ci ratio: 1.271166e-01	ci left: 9.565616e-04	ci right 1.087438e-03	k: 949	n:930000
Cons ci ratio: 4.553338e-02	ci left: 7.726384e-03	ci right 8.087444e-03	k: 7352	n:930000
KS ci ratio: 8.241237e-02	ci left: 2.326843e-03	ci right 2.527889e-03	k: 2256	n:930000
KIAA1804   930000 perm   483 sec   (1925 perm/sec)   p_kst 2.425806e-03   p_cons 7.905376e-03   p_joint 1.020430e-03

Joint ci ratio: 1.300269e-01	ci left: 9.031398e-04	ci right 1.029755e-03	k: 907	n:940000
Cons ci ratio: 4.528152e-02	ci left: 7.730433e-03	ci right 8.089631e-03	k: 7434	n:940000
KS ci ratio: 8.192369e-02	ci left: 2.330222e-03	ci right 2.530310e-03	k: 2283	n:940000
KIAA1804   940000 perm   491 sec   (1913 perm/sec)   p_kst 2.428723e-03   p_cons 7.908511e-03   p_joint 9.648936e-04

Joint ci ratio: 1.293167e-01	ci left: 9.038180e-04	ci right 1.029783e-03	k: 917	n:950000
Cons ci ratio: 4.503379e-02	ci left: 7.734401e-03	ci right 8.091767e-03	k: 7516	n:950000
KS ci ratio: 8.142595e-02	ci left: 2.334566e-03	ci right 2.533751e-03	k: 2311	n:950000
KIAA1804   950000 perm   500 sec   (1900 perm/sec)   p_kst 2.432632e-03   p_cons 7.911579e-03   p_joint 9.652632e-04

Joint ci ratio: 1.286874e-01	ci left: 9.034756e-04	ci right 1.028733e-03	k: 926	n:960000
Cons ci ratio: 4.479306e-02	ci left: 7.737262e-03	ci right 8.092800e-03	k: 7597	n:960000
KS ci ratio: 8.098922e-02	ci left: 2.335760e-03	ci right 2.533928e-03	k: 2336	n:960000
KIAA1804   960000 perm   509 sec   (1888 perm/sec)   p_kst 2.433333e-03   p_cons 7.913542e-03   p_joint 9.645833e-04

Joint ci ratio: 1.282732e-01	ci left: 9.001481e-04	ci right 1.024512e-03	k: 932	n:970000
Cons ci ratio: 4.456785e-02	ci left: 7.735991e-03	ci right 8.089637e-03	k: 7674	n:970000
KS ci ratio: 8.073094e-02	ci left: 2.326831e-03	ci right 2.523582e-03	k: 2351	n:970000
KIAA1804   970000 perm   517 sec   (1876 perm/sec)   p_kst 2.423711e-03   p_cons 7.911340e-03   p_joint 9.608247e-04

Joint ci ratio: 1.275913e-01	ci left: 9.008405e-04	ci right 1.024589e-03	k: 942	n:980000
Cons ci ratio: 4.430282e-02	ci left: 7.749888e-03	ci right 8.102009e-03	k: 7766	n:980000
KS ci ratio: 8.033913e-02	ci left: 2.326084e-03	ci right 2.521773e-03	k: 2374	n:980000
KIAA1804   980000 perm   526 sec   (1863 perm/sec)   p_kst 2.422449e-03   p_cons 7.924490e-03   p_joint 9.612245e-04

Joint ci ratio: 1.272546e-01	ci left: 8.966305e-04	ci right 1.019451e-03	k: 947	n:990000
Cons ci ratio: 4.404246e-02	ci left: 7.763511e-03	ci right 8.114125e-03	k: 7858	n:990000
KS ci ratio: 8.000316e-02	ci left: 2.322386e-03	ci right 2.516908e-03	k: 2394	n:990000
KIAA1804   990000 perm   535 sec   (1852 perm/sec)   p_kst 2.418182e-03   p_cons 7.937374e-03   p_joint 9.565657e-04

Joint ci ratio: 1.170144e-01	ci left: 1.055393e-03	ci right 1.187524e-03	k: 1120	n:1000000
Cons ci ratio: 4.382832e-02	ci left: 7.762030e-03	ci right 8.110830e-03	k: 7935	n:1000000
KS ci ratio: 7.950652e-02	ci left: 2.328564e-03	ci right 2.522336e-03	k: 2424	n:1000000
KIAA1804   1000000 perm   544 sec   (1840 perm/sec)   p_kst 2.424000e-03   p_cons 7.935000e-03   p_joint 1.120000e-03

Joint ci ratio: 1.168587e-01	ci left: 1.047827e-03	ci right 1.178824e-03	k: 1123	n:1010000
Cons ci ratio: 4.360906e-02	ci left: 7.763520e-03	ci right 8.110598e-03	k: 8015	n:1010000
KS ci ratio: 7.916462e-02	ci left: 2.325888e-03	ci right 2.518567e-03	k: 2445	n:1010000
KIAA1804   1010000 perm   552 sec   (1828 perm/sec)   p_kst 2.420792e-03   p_cons 7.935644e-03   p_joint 1.111881e-03

Joint ci ratio: 1.163937e-01	ci left: 1.046120e-03	ci right 1.176348e-03	k: 1132	n:1020000
Cons ci ratio: 4.337146e-02	ci left: 7.772744e-03	ci right 8.118294e-03	k: 8103	n:1020000
KS ci ratio: 7.882708e-02	ci left: 2.323267e-03	ci right 2.514871e-03	k: 2466	n:1020000
KIAA1804   1020000 perm   562 sec   (1816 perm/sec)   p_kst 2.417647e-03   p_cons 7.944118e-03   p_joint 1.109804e-03

Joint ci ratio: 1.173838e-01	ci left: 1.018055e-03	ci right 1.145942e-03	k: 1113	n:1030000
Cons ci ratio: 4.315628e-02	ci left: 7.775071e-03	ci right 8.118967e-03	k: 8184	n:1030000
KS ci ratio: 7.838337e-02	ci left: 2.327361e-03	ci right 2.518173e-03	k: 2494	n:1030000
KIAA1804   1030000 perm   571 sec   (1805 perm/sec)   p_kst 2.421359e-03   p_cons 7.945631e-03   p_joint 1.080583e-03

Joint ci ratio: 1.169126e-01	ci left: 1.016666e-03	ci right 1.143831e-03	k: 1122	n:1040000
Cons ci ratio: 4.298361e-02	ci left: 7.763088e-03	ci right 8.105046e-03	k: 8250	n:1040000
KS ci ratio: 7.794707e-02	ci left: 2.331379e-03	ci right 2.521409e-03	k: 2522	n:1040000
KIAA1804   1040000 perm   580 sec   (1794 perm/sec)   p_kst 2.425000e-03   p_cons 7.932692e-03   p_joint 1.078846e-03

Joint ci ratio: 1.161393e-01	ci left: 1.020853e-03	ci right 1.147639e-03	k: 1137	n:1050000
Cons ci ratio: 4.279485e-02	ci left: 7.757931e-03	ci right 8.098125e-03	k: 8323	n:1050000
KS ci ratio: 7.756371e-02	ci left: 2.332522e-03	ci right 2.521668e-03	k: 2547	n:1050000
KIAA1804   1050000 perm   589 sec   (1782 perm/sec)   p_kst 2.425714e-03   p_cons 7.926667e-03   p_joint 1.082857e-03

Joint ci ratio: 1.156324e-01	ci left: 1.020383e-03	ci right 1.146519e-03	k: 1147	n:1060000
Cons ci ratio: 4.259833e-02	ci left: 7.756609e-03	ci right 8.095144e-03	k: 8400	n:1060000
KS ci ratio: 7.718595e-02	ci left: 2.333646e-03	ci right 2.521919e-03	k: 2572	n:1060000
KIAA1804   1060000 perm   599 sec   (1771 perm/sec)   p_kst 2.426415e-03   p_cons 7.924528e-03   p_joint 1.082075e-03

Joint ci ratio: 1.148347e-01	ci left: 1.025369e-03	ci right 1.151188e-03	k: 1163	n:1070000
Cons ci ratio: 4.238937e-02	ci left: 7.760864e-03	ci right 8.097883e-03	k: 8483	n:1070000
KS ci ratio: 7.678403e-02	ci left: 2.336584e-03	ci right 2.524069e-03	k: 2599	n:1070000
KIAA1804   1070000 perm   608 sec   (1760 perm/sec)   p_kst 2.428972e-03   p_cons 7.928037e-03   p_joint 1.086916e-03

Joint ci ratio: 1.143934e-01	ci left: 1.023970e-03	ci right 1.149101e-03	k: 1172	n:1080000
Cons ci ratio: 4.219090e-02	ci left: 7.762295e-03	ci right 8.097760e-03	k: 8563	n:1080000
KS ci ratio: 7.651984e-02	ci left: 2.331296e-03	ci right 2.517685e-03	k: 2617	n:1080000
KIAA1804   1080000 perm   618 sec   (1749 perm/sec)   p_kst 2.423148e-03   p_cons 7.928704e-03   p_joint 1.085185e-03

Joint ci ratio: 1.138126e-01	ci left: 1.025270e-03	ci right 1.149882e-03	k: 1184	n:1090000
Cons ci ratio: 4.196340e-02	ci left: 7.775506e-03	ci right 8.109686e-03	k: 8656	n:1090000
KS ci ratio: 7.608494e-02	ci left: 2.336906e-03	ci right 2.522634e-03	k: 2647	n:1090000
KIAA1804   1090000 perm   627 sec   (1738 perm/sec)   p_kst 2.428440e-03   p_cons 7.941284e-03   p_joint 1.086239e-03

Joint ci ratio: 1.134305e-01	ci left: 1.023016e-03	ci right 1.146908e-03	k: 1192	n:1100000
Cons ci ratio: 4.182394e-02	ci left: 7.756993e-03	ci right 8.089242e-03	k: 8714	n:1100000
KS ci ratio: 7.582787e-02	ci left: 2.331714e-03	ci right 2.516376e-03	k: 2665	n:1100000
KIAA1804   1100000 perm   637 sec   (1727 perm/sec)   p_kst 2.422727e-03   p_cons 7.921818e-03   p_joint 1.083636e-03

Joint ci ratio: 1.126772e-01	ci left: 1.027806e-03	ci right 1.151397e-03	k: 1208	n:1110000
Cons ci ratio: 4.162612e-02	ci left: 7.761105e-03	ci right 8.091921e-03	k: 8797	n:1110000
KS ci ratio: 7.537658e-02	ci left: 2.338992e-03	ci right 2.523079e-03	k: 2697	n:1110000
KIAA1804   1110000 perm   646 sec   (1717 perm/sec)   p_kst 2.429730e-03   p_cons 7.925225e-03   p_joint 1.088288e-03

Joint ci ratio: 1.122141e-01	ci left: 1.027307e-03	ci right 1.150297e-03	k: 1218	n:1120000
Cons ci ratio: 4.144990e-02	ci left: 7.758078e-03	ci right 8.087332e-03	k: 8872	n:1120000
KS ci ratio: 7.504356e-02	ci left: 2.339134e-03	ci right 2.522383e-03	k: 2721	n:1120000
KIAA1804   1120000 perm   656 sec   (1707 perm/sec)   p_kst 2.429464e-03   p_cons 7.921429e-03   p_joint 1.087500e-03

Joint ci ratio: 1.118023e-01	ci left: 1.025957e-03	ci right 1.148305e-03	k: 1227	n:1130000
Cons ci ratio: 4.127357e-02	ci left: 7.755983e-03	ci right 8.083715e-03	k: 8948	n:1130000
KS ci ratio: 7.476952e-02	ci left: 2.335801e-03	ci right 2.518092e-03	k: 2741	n:1130000
KIAA1804   1130000 perm   666 sec   (1696 perm/sec)   p_kst 2.425664e-03   p_cons 7.918584e-03   p_joint 1.085841e-03

Joint ci ratio: 1.113949e-01	ci left: 1.024632e-03	ci right 1.146347e-03	k: 1236	n:1140000
Cons ci ratio: 4.112015e-02	ci left: 7.746114e-03	ci right 8.072183e-03	k: 9015	n:1140000
KS ci ratio: 7.447144e-02	ci left: 2.334249e-03	ci right 2.515662e-03	k: 2763	n:1140000
KIAA1804   1140000 perm   676 sec   (1686 perm/sec)   p_kst 2.423684e-03   p_cons 7.907895e-03   p_joint 1.084211e-03

Joint ci ratio: 1.109474e-01	ci left: 1.024176e-03	ci right 1.145316e-03	k: 1246	n:1150000
Cons ci ratio: 4.090040e-02	ci left: 7.762241e-03	ci right 8.087201e-03	k: 9112	n:1150000
KS ci ratio: 7.413689e-02	ci left: 2.335287e-03	ci right 2.515929e-03	k: 2788	n:1150000
KIAA1804   1150000 perm   686 sec   (1676 perm/sec)   p_kst 2.424348e-03   p_cons 7.923478e-03   p_joint 1.083478e-03

Joint ci ratio: 1.025968e-01	ci left: 1.192398e-03	ci right 1.322182e-03	k: 1457	n:1160000
Cons ci ratio: 3.900705e-02	ci left: 8.462645e-03	ci right 8.800160e-03	k: 10011	n:1160000
KS ci ratio: 7.383311e-02	ci left: 2.334616e-03	ci right 2.514435e-03	k: 2811	n:1160000
KIAA1804   1160000 perm   696 sec   (1667 perm/sec)   p_kst 2.423276e-03   p_cons 8.630172e-03   p_joint 1.256034e-03

Joint ci ratio: 1.022121e-01	ci left: 1.191368e-03	ci right 1.320523e-03	k: 1468	n:1170000
Cons ci ratio: 3.885419e-02	ci left: 8.457178e-03	ci right 8.793124e-03	k: 10090	n:1170000
KS ci ratio: 7.348110e-02	ci left: 2.337314e-03	ci right 2.516446e-03	k: 2838	n:1170000
KIAA1804   1170000 perm   706 sec   (1657 perm/sec)   p_kst 2.425641e-03   p_cons 8.623932e-03   p_joint 1.254701e-03

Joint ci ratio: 1.018660e-01	ci left: 1.189530e-03	ci right 1.318023e-03	k: 1478	n:1180000
Cons ci ratio: 3.866286e-02	ci left: 8.469433e-03	ci right 8.804172e-03	k: 10190	n:1180000
KS ci ratio: 7.324945e-02	ci left: 2.332480e-03	ci right 2.510654e-03	k: 2856	n:1180000
KIAA1804   1180000 perm   716 sec   (1648 perm/sec)   p_kst 2.420339e-03   p_cons 8.635593e-03   p_joint 1.252542e-03

Joint ci ratio: 1.012854e-01	ci left: 1.193456e-03	ci right 1.321596e-03	k: 1495	n:1190000
Cons ci ratio: 3.849509e-02	ci left: 8.472330e-03	ci right 8.805699e-03	k: 10279	n:1190000
KS ci ratio: 7.285505e-02	ci left: 2.338454e-03	ci right 2.516082e-03	k: 2887	n:1190000
KIAA1804   1190000 perm   726 sec   (1639 perm/sec)   p_kst 2.426050e-03   p_cons 8.637815e-03   p_joint 1.256303e-03

Joint ci ratio: 1.009152e-01	ci left: 1.192446e-03	ci right 1.319981e-03	k: 1506	n:1200000
Cons ci ratio: 3.832576e-02	ci left: 8.476832e-03	ci right 8.808879e-03	k: 10370	n:1200000
KS ci ratio: 7.262925e-02	ci left: 2.333694e-03	ci right 2.510388e-03	k: 2905	n:1200000
KIAA1804   1200000 perm   736 sec   (1630 perm/sec)   p_kst 2.420833e-03   p_cons 8.641667e-03   p_joint 1.255000e-03

Joint ci ratio: 1.016957e-01	ci left: 1.164063e-03	ci right 1.289583e-03	k: 1483	n:1210000
Cons ci ratio: 3.815312e-02	ci left: 8.483720e-03	ci right 8.814506e-03	k: 10464	n:1210000
KS ci ratio: 7.241796e-02	ci left: 2.328202e-03	ci right 2.503945e-03	k: 2922	n:1210000
KIAA1804   1210000 perm   747 sec   (1620 perm/sec)   p_kst 2.414876e-03   p_cons 8.647934e-03   p_joint 1.225620e-03

Joint ci ratio: 1.012870e-01	ci left: 1.164108e-03	ci right 1.289099e-03	k: 1495	n:1220000
Cons ci ratio: 3.797735e-02	ci left: 8.492933e-03	ci right 8.822520e-03	k: 10561	n:1220000
KS ci ratio: 7.208571e-02	ci left: 2.330850e-03	ci right 2.505952e-03	k: 2949	n:1220000
KIAA1804   1220000 perm   757 sec   (1611 perm/sec)   p_kst 2.417213e-03   p_cons 8.656557e-03   p_joint 1.225410e-03

Joint ci ratio: 1.007162e-01	ci left: 1.168116e-03	ci right 1.292788e-03	k: 1512	n:1230000
Cons ci ratio: 3.781294e-02	ci left: 8.497974e-03	ci right 8.826298e-03	k: 10653	n:1230000
KS ci ratio: 7.173384e-02	ci left: 2.335053e-03	ci right 2.509579e-03	k: 2978	n:1230000
KIAA1804   1230000 perm   768 sec   (1603 perm/sec)   p_kst 2.421138e-03   p_cons 8.660976e-03   p_joint 1.229268e-03

Joint ci ratio: 1.001221e-01	ci left: 1.172848e-03	ci right 1.297243e-03	k: 1530	n:1240000
Cons ci ratio: 3.764535e-02	ci left: 8.505332e-03	ci right 8.832453e-03	k: 10748	n:1240000
KS ci ratio: 7.139897e-02	ci left: 2.338399e-03	ci right 2.512325e-03	k: 3006	n:1240000
KIAA1804   1240000 perm   778 sec   (1593 perm/sec)   p_kst 2.424194e-03   p_cons 8.667742e-03   p_joint 1.233871e-03

Joint ci ratio: 1.097690e-01	ci left: 9.632439e-04	ci right 1.075889e-03	k: 1273	n:1250000
Cons ci ratio: 3.745558e-02	ci left: 8.523672e-03	ci right 8.849810e-03	k: 10857	n:1250000
KS ci ratio: 7.116283e-02	ci left: 2.335406e-03	ci right 2.508512e-03	k: 3026	n:1250000
KIAA1804   1250000 perm   789 sec   (1585 perm/sec)   p_kst 2.420800e-03   p_cons 8.685600e-03   p_joint 1.018400e-03

Joint ci ratio: 1.094688e-01	ci left: 9.610023e-04	ci right 1.073058e-03	k: 1280	n:1260000
Cons ci ratio: 3.729782e-02	ci left: 8.528358e-03	ci right 8.853271e-03	k: 10949	n:1260000
KS ci ratio: 7.090569e-02	ci left: 2.334022e-03	ci right 2.506374e-03	k: 3048	n:1260000
KIAA1804   1260000 perm   800 sec   (1576 perm/sec)   p_kst 2.419048e-03   p_cons 8.689683e-03   p_joint 1.015873e-03

Joint ci ratio: 1.089174e-01	ci left: 9.633921e-04	ci right 1.075124e-03	k: 1293	n:1270000
Cons ci ratio: 3.715562e-02	ci left: 8.526732e-03	ci right 8.850318e-03	k: 11033	n:1270000
KS ci ratio: 7.059373e-02	ci left: 2.336527e-03	ci right 2.508274e-03	k: 3075	n:1270000
KIAA1804   1270000 perm   810 sec   (1567 perm/sec)   p_kst 2.421260e-03   p_cons 8.687402e-03   p_joint 1.018110e-03

Joint ci ratio: 1.083328e-01	ci left: 9.665060e-04	ci right 1.077959e-03	k: 1307	n:1280000
Cons ci ratio: 3.699155e-02	ci left: 8.535970e-03	ci right 8.858446e-03	k: 11131	n:1280000
KS ci ratio: 7.028586e-02	ci left: 2.338996e-03	ci right 2.510143e-03	k: 3102	n:1280000
KIAA1804   1280000 perm   821 sec   (1559 perm/sec)   p_kst 2.423437e-03   p_cons 8.696094e-03   p_joint 1.021094e-03

Joint ci ratio: 1.080854e-01	ci left: 9.635389e-04	ci right 1.074380e-03	k: 1313	n:1290000
Cons ci ratio: 3.686608e-02	ci left: 8.528170e-03	ci right 8.849236e-03	k: 11207	n:1290000
KS ci ratio: 7.008305e-02	ci left: 2.334572e-03	ci right 2.504883e-03	k: 3120	n:1290000
KIAA1804   1290000 perm   832 sec   (1550 perm/sec)   p_kst 2.418605e-03   p_cons 8.687597e-03   p_joint 1.017829e-03

Joint ci ratio: 1.088346e-01	ci left: 9.426559e-04	ci right 1.051895e-03	k: 1295	n:1300000
Cons ci ratio: 3.671890e-02	ci left: 8.531163e-03	ci right 8.851032e-03	k: 11297	n:1300000
KS ci ratio: 6.985969e-02	ci left: 2.331729e-03	ci right 2.501269e-03	k: 3140	n:1300000
KIAA1804   1300000 perm   843 sec   (1542 perm/sec)   p_kst 2.415385e-03   p_cons 8.690000e-03   p_joint 9.961538e-04

Joint ci ratio: 1.083756e-01	ci left: 9.436290e-04	ci right 1.052490e-03	k: 1306	n:1310000
Cons ci ratio: 3.656052e-02	ci left: 8.540164e-03	ci right 8.858960e-03	k: 11395	n:1310000
KS ci ratio: 6.948437e-02	ci left: 2.339432e-03	ci right 2.508581e-03	k: 3174	n:1310000
KIAA1804   1310000 perm   854 sec   (1534 perm/sec)   p_kst 2.422901e-03   p_cons 8.698473e-03   p_joint 9.969466e-04

Joint ci ratio: 1.080044e-01	ci left: 9.431139e-04	ci right 1.051519e-03	k: 1315	n:1320000
Cons ci ratio: 3.642496e-02	ci left: 8.539272e-03	ci right 8.856829e-03	k: 11480	n:1320000
KS ci ratio: 6.924494e-02	ci left: 2.338087e-03	ci right 2.506533e-03	k: 3196	n:1320000
KIAA1804   1320000 perm   865 sec   (1526 perm/sec)   p_kst 2.421212e-03   p_cons 8.696970e-03   p_joint 9.962121e-04

Joint ci ratio: 1.077184e-01	ci left: 9.411440e-04	ci right 1.049018e-03	k: 1322	n:1330000
Cons ci ratio: 3.629406e-02	ci left: 8.536905e-03	ci right 8.853210e-03	k: 11563	n:1330000
KS ci ratio: 6.901871e-02	ci left: 2.336024e-03	ci right 2.503749e-03	k: 3217	n:1330000
KIAA1804   1330000 perm   876 sec   (1518 perm/sec)   p_kst 2.418797e-03   p_cons 8.693985e-03   p_joint 9.939850e-04

Joint ci ratio: 1.072331e-01	ci left: 9.428351e-04	ci right 1.050385e-03	k: 1334	n:1340000
Cons ci ratio: 3.616613e-02	ci left: 8.533837e-03	ci right 8.848889e-03	k: 11645	n:1340000
KS ci ratio: 6.873091e-02	ci left: 2.338393e-03	ci right 2.505560e-03	k: 3244	n:1340000
KIAA1804   1340000 perm   888 sec   (1509 perm/sec)   p_kst 2.420896e-03   p_cons 8.690299e-03   p_joint 9.955224e-04

Joint ci ratio: 1.075566e-01	ci left: 9.300840e-04	ci right 1.036520e-03	k: 1326	n:1350000
Cons ci ratio: 3.602870e-02	ci left: 8.535954e-03	ci right 8.849863e-03	k: 11734	n:1350000
KS ci ratio: 6.841524e-02	ci left: 2.342913e-03	ci right 2.509604e-03	k: 3274	n:1350000
KIAA1804   1350000 perm   899 sec   (1502 perm/sec)   p_kst 2.425185e-03   p_cons 8.691852e-03   p_joint 9.822222e-04

Joint ci ratio: 1.071135e-01	ci left: 9.311163e-04	ci right 1.037204e-03	k: 1337	n:1360000
Cons ci ratio: 3.588516e-02	ci left: 8.541687e-03	ci right 8.854529e-03	k: 11828	n:1360000
KS ci ratio: 6.814523e-02	ci left: 2.344477e-03	ci right 2.510595e-03	k: 3300	n:1360000
KIAA1804   1360000 perm   910 sec   (1494 perm/sec)   p_kst 2.426471e-03   p_cons 8.697059e-03   p_joint 9.830882e-04

Joint ci ratio: 1.096878e-01	ci left: 8.802899e-04	ci right 9.831526e-04	k: 1275	n:1370000
Cons ci ratio: 3.575846e-02	ci left: 8.540103e-03	ci right 8.851760e-03	k: 11912	n:1370000
KS ci ratio: 6.790909e-02	ci left: 2.343867e-03	ci right 2.509343e-03	k: 3323	n:1370000
KIAA1804   1370000 perm   922 sec   (1486 perm/sec)   p_kst 2.425547e-03   p_cons 8.694891e-03   p_joint 9.306569e-04

Joint ci ratio: 1.095165e-01	ci left: 8.767300e-04	ci right 9.790064e-04	k: 1279	n:1380000
Cons ci ratio: 3.564959e-02	ci left: 8.530644e-03	ci right 8.840989e-03	k: 11985	n:1380000
KS ci ratio: 6.772612e-02	ci left: 2.339704e-03	ci right 2.504424e-03	k: 3341	n:1380000
KIAA1804   1380000 perm   933 sec   (1479 perm/sec)   p_kst 2.421014e-03   p_cons 8.684783e-03   p_joint 9.268116e-04

Joint ci ratio: 1.091335e-01	ci left: 8.767203e-04	ci right 9.786150e-04	k: 1288	n:1390000
Cons ci ratio: 3.551200e-02	ci left: 8.535584e-03	ci right 8.844886e-03	k: 12078	n:1390000
KS ci ratio: 6.747420e-02	ci left: 2.340553e-03	ci right 2.504696e-03	k: 3366	n:1390000
KIAA1804   1390000 perm   945 sec   (1472 perm/sec)   p_kst 2.421583e-03   p_cons 8.689209e-03   p_joint 9.266187e-04

Joint ci ratio: 1.087964e-01	ci left: 8.760166e-04	ci right 9.774948e-04	k: 1296	n:1400000
Cons ci ratio: 3.539801e-02	ci left: 8.529835e-03	ci right 8.837917e-03	k: 12156	n:1400000
KS ci ratio: 6.719529e-02	ci left: 2.343499e-03	ci right 2.507142e-03	k: 3394	n:1400000
KIAA1804   1400000 perm   956 sec   (1464 perm/sec)   p_kst 2.424286e-03   p_cons 8.682857e-03   p_joint 9.257143e-04

Joint ci ratio: 1.083794e-01	ci left: 8.767033e-04	ci right 9.778470e-04	k: 1306	n:1410000
Cons ci ratio: 3.528075e-02	ci left: 8.526279e-03	ci right 8.833191e-03	k: 12237	n:1410000
KS ci ratio: 6.695903e-02	ci left: 2.343614e-03	ci right 2.506668e-03	k: 3418	n:1410000
KIAA1804   1410000 perm   968 sec   (1456 perm/sec)   p_kst 2.424113e-03   p_cons 8.678723e-03   p_joint 9.262411e-04

Joint ci ratio: 1.080082e-01	ci left: 8.766959e-04	ci right 9.774702e-04	k: 1315	n:1420000
Cons ci ratio: 3.516752e-02	ci left: 8.521378e-03	ci right 8.827110e-03	k: 12316	n:1420000
KS ci ratio: 6.677388e-02	ci left: 2.340266e-03	ci right 2.502619e-03	k: 3437	n:1420000
KIAA1804   1420000 perm   980 sec   (1449 perm/sec)   p_kst 2.420423e-03   p_cons 8.673239e-03   p_joint 9.260563e-04

Joint ci ratio: 1.074785e-01	ci left: 8.794111e-04	ci right 9.799705e-04	k: 1328	n:1430000
Cons ci ratio: 3.504682e-02	ci left: 8.520707e-03	ci right 8.825344e-03	k: 12401	n:1430000
KS ci ratio: 6.652277e-02	ci left: 2.341779e-03	ci right 2.503603e-03	k: 3463	n:1430000
KIAA1804   1430000 perm   992 sec   (1441 perm/sec)   p_kst 2.421678e-03   p_cons 8.672028e-03   p_joint 9.286713e-04

Joint ci ratio: 1.083804e-01	ci left: 8.584382e-04	ci right 9.574757e-04	k: 1306	n:1440000
Cons ci ratio: 3.493582e-02	ci left: 8.515916e-03	ci right 8.819398e-03	k: 12480	n:1440000
KS ci ratio: 6.626496e-02	ci left: 2.343956e-03	ci right 2.505278e-03	k: 3490	n:1440000
KIAA1804   1440000 perm   1004 sec   (1434 perm/sec)   p_kst 2.423611e-03   p_cons 8.666667e-03   p_joint 9.069444e-04

Joint ci ratio: 1.081739e-01	ci left: 8.558728e-04	ci right 9.544141e-04	k: 1311	n:1450000
Cons ci ratio: 3.482727e-02	ci left: 8.510509e-03	ci right 8.812837e-03	k: 12558	n:1450000
KS ci ratio: 6.597253e-02	ci left: 2.348817e-03	ci right 2.509733e-03	k: 3521	n:1450000
KIAA1804   1450000 perm   1016 sec   (1427 perm/sec)   p_kst 2.428276e-03   p_cons 8.660690e-03   p_joint 9.041379e-04

Joint ci ratio: 1.078865e-01	ci left: 8.546756e-04	ci right 9.528011e-04	k: 1318	n:1460000
Cons ci ratio: 3.471279e-02	ci left: 8.508573e-03	ci right 8.809819e-03	k: 12641	n:1460000
KS ci ratio: 6.571176e-02	ci left: 2.351591e-03	ci right 2.512037e-03	k: 3549	n:1460000
KIAA1804   1460000 perm   1028 sec   (1420 perm/sec)   p_kst 2.430822e-03   p_cons 8.658219e-03   p_joint 9.027397e-04

Joint ci ratio: 1.084645e-01	ci left: 8.395950e-04	ci right 9.365385e-04	k: 1304	n:1470000
Cons ci ratio: 3.458163e-02	ci left: 8.515433e-03	ci right 8.815760e-03	k: 12737	n:1470000
KS ci ratio: 6.541741e-02	ci left: 2.357006e-03	ci right 2.517073e-03	k: 3581	n:1470000
KIAA1804   1470000 perm   1040 sec   (1413 perm/sec)   p_kst 2.436054e-03   p_cons 8.664626e-03   p_joint 8.870748e-04

Joint ci ratio: 1.080925e-01	ci left: 8.398384e-04	ci right 9.364562e-04	k: 1313	n:1480000
Cons ci ratio: 3.446955e-02	ci left: 8.513493e-03	ci right 8.812759e-03	k: 12820	n:1480000
KS ci ratio: 6.519030e-02	ci left: 2.357696e-03	ci right 2.517234e-03	k: 3606	n:1480000
KIAA1804   1480000 perm   1053 sec   (1406 perm/sec)   p_kst 2.436486e-03   p_cons 8.662162e-03   p_joint 8.871622e-04

Joint ci ratio: 1.110057e-01	ci left: 7.898135e-04	ci right 8.832853e-04	k: 1245	n:1490000
Cons ci ratio: 3.434380e-02	ci left: 8.518900e-03	ci right 8.817243e-03	k: 12914	n:1490000
KS ci ratio: 6.491181e-02	ci left: 2.362340e-03	ci right 2.521483e-03	k: 3637	n:1490000
KIAA1804   1490000 perm   1065 sec   (1398 perm/sec)   p_kst 2.440940e-03   p_cons 8.667114e-03   p_joint 8.355705e-04

Joint ci ratio: 1.114094e-01	ci left: 7.787147e-04	ci right 8.712302e-04	k: 1236	n:1500000
Cons ci ratio: 3.424066e-02	ci left: 8.513661e-03	ci right 8.810907e-03	k: 12992	n:1500000
KS ci ratio: 6.468991e-02	ci left: 2.362988e-03	ci right 2.521610e-03	k: 3662	n:1500000
KIAA1804   1500000 perm   1078 sec   (1392 perm/sec)   p_kst 2.441333e-03   p_cons 8.661333e-03   p_joint 8.240000e-04

Joint ci ratio: 1.108284e-01	ci left: 7.819277e-04	ci right 8.743088e-04	k: 1249	n:1510000
Cons ci ratio: 3.413580e-02	ci left: 8.509806e-03	ci right 8.805990e-03	k: 13072	n:1510000
KS ci ratio: 6.440902e-02	ci left: 2.368189e-03	ci right 2.526444e-03	k: 3694	n:1510000
KIAA1804   1510000 perm   1090 sec   (1385 perm/sec)   p_kst 2.446358e-03   p_cons 8.656954e-03   p_joint 8.271523e-04

Joint ci ratio: 1.105194e-01	ci left: 7.812612e-04	ci right 8.732895e-04	k: 1256	n:1520000
Cons ci ratio: 3.405281e-02	ci left: 8.495566e-03	ci right 8.790521e-03	k: 13136	n:1520000
KS ci ratio: 6.424417e-02	ci left: 2.364908e-03	ci right 2.522524e-03	k: 3713	n:1520000
KIAA1804   1520000 perm   1103 sec   (1378 perm/sec)   p_kst 2.442763e-03   p_cons 8.642105e-03   p_joint 8.263158e-04

Joint ci ratio: 1.103004e-01	ci left: 7.793326e-04	ci right 8.709399e-04	k: 1261	n:1530000
Cons ci ratio: 3.395096e-02	ci left: 8.491234e-03	ci right 8.785140e-03	k: 13215	n:1530000
KS ci ratio: 6.407198e-02	ci left: 2.362313e-03	ci right 2.519319e-03	k: 3733	n:1530000
KIAA1804   1530000 perm   1116 sec   (1371 perm/sec)   p_kst 2.439869e-03   p_cons 8.637255e-03   p_joint 8.241830e-04

Joint ci ratio: 1.100392e-01	ci left: 7.780607e-04	ci right 8.692879e-04	k: 1267	n:1540000
Cons ci ratio: 3.383591e-02	ci left: 8.494043e-03	ci right 8.787030e-03	k: 13305	n:1540000
KS ci ratio: 6.386707e-02	ci left: 2.362308e-03	ci right 2.518793e-03	k: 3757	n:1540000
KIAA1804   1540000 perm   1129 sec   (1365 perm/sec)   p_kst 2.439610e-03   p_cons 8.639610e-03   p_joint 8.227273e-04

Joint ci ratio: 1.097368e-01	ci left: 7.774330e-04	ci right 8.683198e-04	k: 1274	n:1550000
Cons ci ratio: 3.372963e-02	ci left: 8.492978e-03	ci right 8.784991e-03	k: 13389	n:1550000
KS ci ratio: 6.363039e-02	ci left: 2.364844e-03	ci right 2.520895e-03	k: 3785	n:1550000
KIAA1804   1550000 perm   1141 sec   (1358 perm/sec)   p_kst 2.441935e-03   p_cons 8.638065e-03   p_joint 8.219355e-04

Joint ci ratio: 1.096081e-01	ci left: 7.743197e-04	ci right 8.647296e-04	k: 1277	n:1560000
Cons ci ratio: 3.361303e-02	ci left: 8.497650e-03	ci right 8.788794e-03	k: 13482	n:1560000
KS ci ratio: 6.346307e-02	ci left: 2.362302e-03	ci right 2.517760e-03	k: 3805	n:1560000
KIAA1804   1560000 perm   1154 sec   (1352 perm/sec)   p_kst 2.439103e-03   p_cons 8.642308e-03   p_joint 8.185897e-04

Joint ci ratio: 1.093092e-01	ci left: 7.737242e-04	ci right 8.638024e-04	k: 1284	n:1570000
Cons ci ratio: 3.351009e-02	ci left: 8.495947e-03	ci right 8.786124e-03	k: 13565	n:1570000
KS ci ratio: 6.331366e-02	ci left: 2.358538e-03	ci right 2.513370e-03	k: 3823	n:1570000
KIAA1804   1570000 perm   1167 sec   (1346 perm/sec)   p_kst 2.435032e-03   p_cons 8.640127e-03   p_joint 8.178344e-04

Joint ci ratio: 1.104333e-01	ci left: 7.528233e-04	ci right 8.414281e-04	k: 1258	n:1580000
Cons ci ratio: 3.338588e-02	ci left: 8.505566e-03	ci right 8.794974e-03	k: 13666	n:1580000
KS ci ratio: 6.314883e-02	ci left: 2.356069e-03	ci right 2.510321e-03	k: 3843	n:1580000
KIAA1804   1580000 perm   1180 sec   (1339 perm/sec)   p_kst 2.432278e-03   p_cons 8.649367e-03   p_joint 7.962025e-04

Joint ci ratio: 1.100841e-01	ci left: 7.529812e-04	ci right 8.413062e-04	k: 1266	n:1590000
Cons ci ratio: 3.328012e-02	ci left: 8.506333e-03	ci right 8.794833e-03	k: 13753	n:1590000
KS ci ratio: 6.292816e-02	ci left: 2.357964e-03	ci right 2.511781e-03	k: 3870	n:1590000
KIAA1804   1590000 perm   1193 sec   (1333 perm/sec)   p_kst 2.433962e-03   p_cons 8.649686e-03   p_joint 7.962264e-04

Joint ci ratio: 1.097382e-01	ci left: 7.531377e-04	ci right 8.411855e-04	k: 1274	n:1600000
Cons ci ratio: 3.317656e-02	ci left: 8.506471e-03	ci right 8.794061e-03	k: 13839	n:1600000
KS ci ratio: 6.275823e-02	ci left: 2.356146e-03	ci right 2.509414e-03	k: 3891	n:1600000
KIAA1804   1600000 perm   1206 sec   (1327 perm/sec)   p_kst 2.431875e-03   p_cons 8.649375e-03   p_joint 7.962500e-04

Joint ci ratio: 1.094382e-01	ci left: 7.526884e-04	ci right 8.404277e-04	k: 1281	n:1610000
Cons ci ratio: 3.307636e-02	ci left: 8.505378e-03	ci right 8.792046e-03	k: 13923	n:1610000
KS ci ratio: 6.254161e-02	ci left: 2.358019e-03	ci right 2.510860e-03	k: 3918	n:1610000
KIAA1804   1610000 perm   1219 sec   (1321 perm/sec)   p_kst 2.433540e-03   p_cons 8.647826e-03   p_joint 7.956522e-04

Joint ci ratio: 1.161105e-01	ci left: 6.622565e-04	ci right 7.444837e-04	k: 1138	n:1620000
Cons ci ratio: 3.298182e-02	ci left: 8.501850e-03	ci right 8.787565e-03	k: 14003	n:1620000
KS ci ratio: 6.236685e-02	ci left: 2.356831e-03	ci right 2.509154e-03	k: 3940	n:1620000
KIAA1804   1620000 perm   1232 sec   (1315 perm/sec)   p_kst 2.432099e-03   p_cons 8.643827e-03   p_joint 7.024691e-04

Joint ci ratio: 1.158565e-01	ci left: 6.611720e-04	ci right 7.430728e-04	k: 1143	n:1630000
Cons ci ratio: 3.287984e-02	ci left: 8.502627e-03	ci right 8.787467e-03	k: 14090	n:1630000
KS ci ratio: 6.216996e-02	ci left: 2.357471e-03	ci right 2.509336e-03	k: 3965	n:1630000
KIAA1804   1630000 perm   1245 sec   (1309 perm/sec)   p_kst 2.432515e-03   p_cons 8.644172e-03   p_joint 7.012270e-04

Joint ci ratio: 1.156546e-01	ci left: 6.595089e-04	ci right 7.410515e-04	k: 1147	n:1640000
Cons ci ratio: 3.278113e-02	ci left: 8.502185e-03	ci right 8.786140e-03	k: 14175	n:1640000
KS ci ratio: 6.198271e-02	ci left: 2.357503e-03	ci right 2.508897e-03	k: 3989	n:1640000
KIAA1804   1640000 perm   1258 sec   (1303 perm/sec)   p_kst 2.432317e-03   p_cons 8.643293e-03   p_joint 6.993902e-04

Joint ci ratio: 1.006321e-01	ci left: 8.725432e-04	ci right 9.655865e-04	k: 1515	n:1650000
Cons ci ratio: 3.269024e-02	ci left: 8.498143e-03	ci right 8.781161e-03	k: 14254	n:1650000
KS ci ratio: 6.183575e-02	ci left: 2.354552e-03	ci right 2.505385e-03	k: 4008	n:1650000
KIAA1804   1650000 perm   1272 sec   (1297 perm/sec)   p_kst 2.429091e-03   p_cons 8.638788e-03   p_joint 9.181818e-04

Joint ci ratio: 1.003348e-01	ci left: 8.725724e-04	ci right 9.653276e-04	k: 1524	n:1660000
Cons ci ratio: 3.260240e-02	ci left: 8.492956e-03	ci right 8.775027e-03	k: 14331	n:1660000
KS ci ratio: 6.163618e-02	ci left: 2.355789e-03	ci right 2.506196e-03	k: 4034	n:1660000
KIAA1804   1660000 perm   1285 sec   (1291 perm/sec)   p_kst 2.430120e-03   p_cons 8.633133e-03   p_joint 9.180723e-04

Joint ci ratio: 9.997479e-02	ci left: 8.737692e-04	ci right 9.662990e-04	k: 1535	n:1670000
Cons ci ratio: 3.251413e-02	ci left: 8.488426e-03	ci right 8.769569e-03	k: 14409	n:1670000
KS ci ratio: 6.137795e-02	ci left: 2.361729e-03	ci right 2.511861e-03	k: 4068	n:1670000
KIAA1804   1670000 perm   1299 sec   (1286 perm/sec)   p_kst 2.435928e-03   p_cons 8.628144e-03   p_joint 9.191617e-04

Outputting figure to mutsig2_images.part000000000091/KIAA1804.4_3151_1670000_0.0024359_0.0086281_0.00091916.png
                gene_name: KIAA1804
               theta_stop: 0.100 
                    nperm: 1670000 
                     p_ks: 0.0024 
        ci_ks_bounds_left: 0.0024 
       ci_ks_bounds_right: 0.0025 
                   p_cons: 0.0086 
      ci_cons_bounds_left: 0.0085 
     ci_cons_bounds_right: 0.0088 
                  p_joint: 0.00092 
     ci_joint_bounds_left: 0.00087 
    ci_joint_bounds_right: 0.00097 

Current progress: 46 percent done.
KIF17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.561642e-02	ci left: 3.225714e-01	ci right 3.411266e-01	k: 3318	n:10000
KS ci ratio: 2.191363e-02	ci left: 7.534265e-01	ci right 7.702207e-01	k: 7619	n:10000
KIF17   10000 perm   1 sec   (6815 perm/sec)   p_kst 7.619000e-01   p_cons 3.318000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000091/KIF17.4_3150_10000_0.7619_0.3318_1.png
                gene_name: KIF17
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 48 percent done.
KIF1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.280852e-02	ci left: 4.462022e-01	ci right 4.658234e-01	k: 4560	n:10000
KS ci ratio: 1.540909e-02	ci left: 8.593708e-01	ci right 8.728151e-01	k: 8662	n:10000
KIF1A   10000 perm   2 sec   (5260 perm/sec)   p_kst 8.662000e-01   p_cons 4.560000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000091/KIF1A.4_5257_10000_0.8662_0.456_1.png
                gene_name: KIF1A
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 49 percent done.
KIF20A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.176015e-02	ci left: 1.792031e-01	ci right 1.945798e-01	k: 1868	n:10000
Cons ci ratio: 1.135382e-01	ci left: 1.004217e-01	ci right 1.126086e-01	k: 1064	n:10000
KS ci ratio: 5.317518e-02	ci left: 3.426336e-01	ci right 3.614527e-01	k: 3520	n:10000
KIF20A   10000 perm   2 sec   (5959 perm/sec)   p_kst 3.520000e-01   p_cons 1.064000e-01   p_joint 1.868000e-01

Joint ci ratio: 4.602656e-02	ci left: 2.599848e-01	ci right 2.722833e-01	k: 5322	n:20000
Cons ci ratio: 7.666701e-02	ci left: 1.111506e-01	ci right 1.200615e-01	k: 2311	n:20000
KS ci ratio: 3.678642e-02	ci left: 3.554347e-01	ci right 3.688054e-01	k: 7242	n:20000
KIF20A   20000 perm   4 sec   (5393 perm/sec)   p_kst 3.621000e-01   p_cons 1.155500e-01   p_joint 2.661000e-01

Outputting figure to mutsig2_images.part000000000091/KIF20A.4_2745_20000_0.3621_0.11555_0.2661.png
                gene_name: KIF20A
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 51 percent done.
KIF24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.911566e-02	ci left: 1.892437e-01	ci right 2.049332e-01	k: 1970	n:10000
Cons ci ratio: 1.528606e-01	ci left: 5.696592e-02	ci right 6.649137e-02	k: 616	n:10000
KS ci ratio: 3.790644e-02	ci left: 5.068520e-01	ci right 5.265383e-01	k: 5167	n:10000
KIF24   10000 perm   2 sec   (5547 perm/sec)   p_kst 5.167000e-01   p_cons 6.160000e-02   p_joint 1.970000e-01

Joint ci ratio: 6.643894e-02	ci left: 1.433023e-01	ci right 1.532002e-01	k: 2964	n:20000
Cons ci ratio: 1.073513e-01	ci left: 5.913530e-02	ci right 6.589257e-02	k: 1249	n:20000
KS ci ratio: 2.685147e-02	ci left: 5.088971e-01	ci right 5.227983e-01	k: 10317	n:20000
KIF24   20000 perm   4 sec   (4675 perm/sec)   p_kst 5.158500e-01   p_cons 6.245000e-02   p_joint 1.482000e-01

Joint ci ratio: 5.494920e-02	ci left: 1.410335e-01	ci right 1.490354e-01	k: 4350	n:30000
Cons ci ratio: 8.581225e-02	ci left: 6.223591e-02	ci right 6.784869e-02	k: 1950	n:30000
KS ci ratio: 2.199279e-02	ci left: 5.086266e-01	ci right 5.199707e-01	k: 15429	n:30000
KIF24   30000 perm   7 sec   (4587 perm/sec)   p_kst 5.143000e-01   p_cons 6.500000e-02   p_joint 1.450000e-01

Outputting figure to mutsig2_images.part000000000091/KIF24.4_4155_30000_0.5143_0.065_0.145.png
                gene_name: KIF24
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.065 
      ci_cons_bounds_left: 0.062 
     ci_cons_bounds_right: 0.068 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 52 percent done.
KIF5B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.852468e-02	ci left: 3.852013e-01	ci right 4.044600e-01	k: 3948	n:10000
Cons ci ratio: 4.909800e-02	ci left: 3.796273e-01	ci right 3.988373e-01	k: 3892	n:10000
KS ci ratio: 7.926594e-02	ci left: 1.886528e-01	ci right 2.043244e-01	k: 1964	n:10000
KIF5B   10000 perm   2 sec   (6185 perm/sec)   p_kst 1.964000e-01   p_cons 3.892000e-01   p_joint 3.948000e-01

Outputting figure to mutsig2_images.part000000000091/KIF5B.4_2992_10000_0.1964_0.3892_0.3948.png
                gene_name: KIF5B
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.40 

Current progress: 54 percent done.
KIF5C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.418978e-01	ci left: 6.584842e-02	ci right 7.600325e-02	k: 708	n:10000
Cons ci ratio: 4.479208e-01	ci left: 5.903663e-03	ci right 9.392367e-03	k: 75	n:10000
KS ci ratio: 4.384107e-02	ci left: 4.344288e-01	ci right 4.540037e-01	k: 4442	n:10000
KIF5C   10000 perm   2 sec   (5776 perm/sec)   p_kst 4.442000e-01   p_cons 7.500000e-03   p_joint 7.080000e-02

Joint ci ratio: 1.196283e-01	ci left: 4.789434e-02	ci right 5.403704e-02	k: 1018	n:20000
Cons ci ratio: 3.086535e-01	ci left: 6.766163e-03	ci right 9.280034e-03	k: 159	n:20000
KS ci ratio: 3.147190e-02	ci left: 4.299107e-01	ci right 4.437077e-01	k: 8736	n:20000
KIF5C   20000 perm   4 sec   (5238 perm/sec)   p_kst 4.368000e-01   p_cons 7.950000e-03   p_joint 5.090000e-02

Joint ci ratio: 7.433381e-02	ci left: 8.167123e-02	ci right 8.800944e-02	k: 2544	n:30000
Cons ci ratio: 2.530818e-01	ci left: 6.929423e-03	ci right 8.967601e-03	k: 237	n:30000
KS ci ratio: 2.574625e-02	ci left: 4.302452e-01	ci right 4.415005e-01	k: 13076	n:30000
KIF5C   30000 perm   6 sec   (5037 perm/sec)   p_kst 4.358667e-01   p_cons 7.900000e-03   p_joint 8.480000e-02

Joint ci ratio: 7.539626e-02	ci left: 6.090843e-02	ci right 6.570520e-02	k: 2531	n:40000
Cons ci ratio: 2.217739e-01	ci left: 6.890396e-03	ci right 8.632207e-03	k: 309	n:40000
KS ci ratio: 2.232181e-02	ci left: 4.304586e-01	ci right 4.402008e-01	k: 17413	n:40000
KIF5C   40000 perm   8 sec   (4897 perm/sec)   p_kst 4.353250e-01   p_cons 7.725000e-03   p_joint 6.327500e-02

Joint ci ratio: 7.532624e-02	ci left: 4.944133e-02	ci right 5.333096e-02	k: 2568	n:50000
Cons ci ratio: 1.997951e-01	ci left: 6.876477e-03	ci right 8.421510e-03	k: 381	n:50000
KS ci ratio: 1.994613e-02	ci left: 4.314475e-01	ci right 4.401600e-01	k: 21790	n:50000
KIF5C   50000 perm   10 sec   (4776 perm/sec)   p_kst 4.358000e-01   p_cons 7.620000e-03   p_joint 5.136000e-02

Joint ci ratio: 6.047192e-02	ci left: 6.346737e-02	ci right 6.744146e-02	k: 3926	n:60000
Cons ci ratio: 1.814721e-01	ci left: 7.016139e-03	ci right 8.432101e-03	k: 462	n:60000
KS ci ratio: 1.840155e-02	ci left: 4.266497e-01	ci right 4.345903e-01	k: 25837	n:60000
KIF5C   60000 perm   13 sec   (4673 perm/sec)   p_kst 4.306167e-01   p_cons 7.700000e-03   p_joint 6.543333e-02

Joint ci ratio: 5.859195e-02	ci left: 5.833636e-02	ci right 6.187164e-02	k: 4206	n:70000
Cons ci ratio: 1.681939e-01	ci left: 7.052101e-03	ci right 8.360631e-03	k: 538	n:70000
KS ci ratio: 1.705208e-02	ci left: 4.264996e-01	ci right 4.338491e-01	k: 30112	n:70000
KIF5C   70000 perm   15 sec   (4582 perm/sec)   p_kst 4.301714e-01   p_cons 7.685714e-03   p_joint 6.008571e-02

Joint ci ratio: 5.250456e-02	ci left: 6.342471e-02	ci right 6.685691e-02	k: 5210	n:80000
Cons ci ratio: 1.572025e-01	ci left: 7.105939e-03	ci right 8.330167e-03	k: 616	n:80000
KS ci ratio: 1.594541e-02	ci left: 4.269029e-01	ci right 4.337772e-01	k: 34427	n:80000
KIF5C   80000 perm   18 sec   (4495 perm/sec)   p_kst 4.303375e-01   p_cons 7.700000e-03   p_joint 6.512500e-02

Joint ci ratio: 4.948544e-02	ci left: 6.356262e-02	ci right 6.679881e-02	k: 5865	n:90000
Cons ci ratio: 1.470556e-01	ci left: 7.257020e-03	ci right 8.419483e-03	k: 704	n:90000
KS ci ratio: 1.503194e-02	ci left: 4.271508e-01	ci right 4.336314e-01	k: 38735	n:90000
KIF5C   90000 perm   20 sec   (4412 perm/sec)   p_kst 4.303889e-01   p_cons 7.822222e-03   p_joint 6.516667e-02

Joint ci ratio: 4.333403e-02	ci left: 7.399855e-02	ci right 7.728611e-02	k: 7563	n:100000
Cons ci ratio: 1.380368e-01	ci left: 7.447511e-03	ci right 8.561310e-03	k: 799	n:100000
KS ci ratio: 1.424804e-02	ci left: 4.277479e-01	ci right 4.338961e-01	k: 43082	n:100000
KIF5C   100000 perm   23 sec   (4338 perm/sec)   p_kst 4.308200e-01   p_cons 7.990000e-03   p_joint 7.563000e-02

Joint ci ratio: 4.133728e-02	ci left: 7.400842e-02	ci right 7.714128e-02	k: 8312	n:110000
Cons ci ratio: 1.311629e-01	ci left: 7.525986e-03	ci right 8.591106e-03	k: 885	n:110000
KS ci ratio: 1.359261e-02	ci left: 4.276167e-01	ci right 4.334779e-01	k: 47360	n:110000
KIF5C   110000 perm   26 sec   (4252 perm/sec)   p_kst 4.305455e-01   p_cons 8.045455e-03   p_joint 7.556364e-02

Joint ci ratio: 3.946160e-02	ci left: 7.448198e-02	ci right 7.748855e-02	k: 9117	n:120000
Cons ci ratio: 1.255492e-01	ci left: 7.552158e-03	ci right 8.571831e-03	k: 966	n:120000
KS ci ratio: 1.301029e-02	ci left: 4.278792e-01	ci right 4.334908e-01	k: 51682	n:120000
KIF5C   120000 perm   29 sec   (4178 perm/sec)   p_kst 4.306833e-01   p_cons 8.050000e-03   p_joint 7.597500e-02

Joint ci ratio: 3.322012e-02	ci left: 9.513674e-02	ci right 9.835819e-02	k: 12576	n:130000
Cons ci ratio: 1.195688e-01	ci left: 7.709460e-03	ci right 8.697282e-03	k: 1065	n:130000
KS ci ratio: 1.250418e-02	ci left: 4.278215e-01	ci right 4.332124e-01	k: 55967	n:130000
KIF5C   130000 perm   32 sec   (4101 perm/sec)   p_kst 4.305154e-01   p_cons 8.192308e-03   p_joint 9.673846e-02

Joint ci ratio: 3.352739e-02	ci left: 8.746378e-02	ci right 9.045327e-02	k: 12453	n:140000
Cons ci ratio: 1.156263e-01	ci left: 7.671800e-03	ci right 8.620170e-03	k: 1139	n:140000
KS ci ratio: 1.204007e-02	ci left: 4.282968e-01	ci right 4.334918e-01	k: 60325	n:140000
KIF5C   140000 perm   35 sec   (4035 perm/sec)   p_kst 4.308929e-01   p_cons 8.135714e-03   p_joint 8.895000e-02

Joint ci ratio: 2.850712e-02	ci left: 1.103486e-01	ci right 1.135464e-01	k: 16791	n:150000
Cons ci ratio: 1.111305e-01	ci left: 7.769266e-03	ci right 8.689895e-03	k: 1233	n:150000
KS ci ratio: 1.134388e-02	ci left: 4.407105e-01	ci right 4.457450e-01	k: 66484	n:150000
KIF5C   150000 perm   38 sec   (3972 perm/sec)   p_kst 4.432267e-01   p_cons 8.220000e-03   p_joint 1.119400e-01

Joint ci ratio: 2.792372e-02	ci left: 1.081292e-01	ci right 1.111975e-01	k: 17545	n:160000
Cons ci ratio: 1.074892e-01	ci left: 7.800420e-03	ci right 8.692537e-03	k: 1318	n:160000
KS ci ratio: 1.098413e-02	ci left: 4.407701e-01	ci right 4.456445e-01	k: 70913	n:160000
KIF5C   160000 perm   41 sec   (3917 perm/sec)   p_kst 4.432063e-01   p_cons 8.237500e-03   p_joint 1.096562e-01

Joint ci ratio: 2.708235e-02	ci left: 1.082298e-01	ci right 1.112070e-01	k: 18651	n:170000
Cons ci ratio: 1.041465e-01	ci left: 7.834073e-03	ci right 8.700469e-03	k: 1404	n:170000
KS ci ratio: 1.066025e-02	ci left: 4.406544e-01	ci right 4.453829e-01	k: 75313	n:170000
KIF5C   170000 perm   44 sec   (3857 perm/sec)   p_kst 4.430176e-01   p_cons 8.258824e-03   p_joint 1.097118e-01

Joint ci ratio: 2.618929e-02	ci left: 1.092375e-01	ci right 1.121418e-01	k: 19923	n:180000
Cons ci ratio: 1.014064e-01	ci left: 7.815625e-03	ci right 8.655885e-03	k: 1481	n:180000
KS ci ratio: 1.036249e-02	ci left: 4.405979e-01	ci right 4.451929e-01	k: 79721	n:180000
KIF5C   180000 perm   47 sec   (3802 perm/sec)   p_kst 4.428944e-01   p_cons 8.227778e-03   p_joint 1.106833e-01

Joint ci ratio: 2.548799e-02	ci left: 1.092977e-01	ci right 1.121247e-01	k: 21034	n:190000
Cons ci ratio: 9.868059e-02	ci left: 7.830191e-03	ci right 8.648077e-03	k: 1564	n:190000
KS ci ratio: 1.008998e-02	ci left: 4.404701e-01	ci right 4.449422e-01	k: 84114	n:190000
KIF5C   190000 perm   51 sec   (3749 perm/sec)   p_kst 4.427053e-01   p_cons 8.231579e-03   p_joint 1.107053e-01

Outputting figure to mutsig2_images.part000000000091/KIF5C.4_2896_190000_0.44271_0.0082316_0.11071.png
                gene_name: KIF5C
               theta_stop: 0.099 
                    nperm: 190000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.0082 
      ci_cons_bounds_left: 0.0078 
     ci_cons_bounds_right: 0.0086 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 55 percent done.
KIF9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.930177e-02	ci left: 6.320107e-01	ci right 6.509069e-01	k: 6415	n:10000
Cons ci ratio: 1.625577e-02	ci left: 8.462127e-01	ci right 8.601809e-01	k: 8533	n:10000
KS ci ratio: 5.255174e-02	ci left: 3.479998e-01	ci right 3.668833e-01	k: 3574	n:10000
KIF9   10000 perm   2 sec   (6512 perm/sec)   p_kst 3.574000e-01   p_cons 8.533000e-01   p_joint 6.415000e-01

Outputting figure to mutsig2_images.part000000000091/KIF9.4_2453_10000_0.3574_0.8533_0.6415.png
                gene_name: KIF9
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 56 percent done.
KIFC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.189121e-02	ci left: 2.773546e-01	ci right 2.951701e-01	k: 2862	n:10000
Cons ci ratio: 9.476548e-02	ci left: 1.391331e-01	ci right 1.530738e-01	k: 1460	n:10000
KS ci ratio: 7.398202e-02	ci left: 2.110256e-01	ci right 2.273383e-01	k: 2191	n:10000
KIFC2   10000 perm   2 sec   (6125 perm/sec)   p_kst 2.191000e-01   p_cons 1.460000e-01   p_joint 2.862000e-01

Outputting figure to mutsig2_images.part000000000091/KIFC2.4_2585_10000_0.2191_0.146_0.2862.png
                gene_name: KIFC2
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 58 percent done.
KIR2DL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.966982e-02	ci left: 1.870774e-01	ci right 2.027008e-01	k: 1948	n:10000
Cons ci ratio: 1.056010e-01	ci left: 1.146691e-01	ci right 1.275526e-01	k: 1210	n:10000
KS ci ratio: 7.779080e-02	ci left: 1.945626e-01	ci right 2.104111e-01	k: 2024	n:10000
KIR2DL3   10000 perm   1 sec   (6704 perm/sec)   p_kst 2.024000e-01   p_cons 1.210000e-01   p_joint 1.948000e-01

Joint ci ratio: 5.770953e-02	ci left: 1.820125e-01	ci right 1.928785e-01	k: 3748	n:20000
Cons ci ratio: 7.461996e-02	ci left: 1.167073e-01	ci right 1.258032e-01	k: 2424	n:20000
KS ci ratio: 5.531551e-02	ci left: 1.951185e-01	ci right 2.062687e-01	k: 4013	n:20000
KIR2DL3   20000 perm   3 sec   (6029 perm/sec)   p_kst 2.006500e-01   p_cons 1.212000e-01   p_joint 1.874000e-01

Outputting figure to mutsig2_images.part000000000091/KIR2DL3.4_1058_20000_0.20065_0.1212_0.1874.png
                gene_name: KIR2DL3
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 59 percent done.
KIAA1543
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.830018e-02	ci left: 1.924939e-01	ci right 2.082810e-01	k: 2003	n:10000
Cons ci ratio: 9.533935e-02	ci left: 1.376631e-01	ci right 1.515446e-01	k: 1445	n:10000
KS ci ratio: 5.189480e-02	ci left: 3.537651e-01	ci right 3.727147e-01	k: 3632	n:10000
KIAA1543   10000 perm   2 sec   (6030 perm/sec)   p_kst 3.632000e-01   p_cons 1.445000e-01   p_joint 2.003000e-01

Outputting figure to mutsig2_images.part000000000091/KIAA1543.3_3907_10000_0.3632_0.1445_0.2003.png
                gene_name: KIAA1543
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 61 percent done.
KIAA1586
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.301790e-02	ci left: 7.349217e-01	ci right 7.521362e-01	k: 7436	n:10000
Cons ci ratio: 1.624928e-02	ci left: 8.463146e-01	ci right 8.602789e-01	k: 8534	n:10000
KS ci ratio: 4.911865e-02	ci left: 3.794282e-01	ci right 3.986365e-01	k: 3890	n:10000
KIAA1586   10000 perm   2 sec   (6620 perm/sec)   p_kst 3.890000e-01   p_cons 8.534000e-01   p_joint 7.436000e-01

Outputting figure to mutsig2_images.part000000000091/KIAA1586.3_2380_10000_0.389_0.8534_0.7436.png
                gene_name: KIAA1586
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 62 percent done.
KIAA1609
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.423102e-02	ci left: 5.575209e-01	ci right 5.770399e-01	k: 5673	n:10000
Cons ci ratio: 5.272375e-02	ci left: 3.465091e-01	ci right 3.653749e-01	k: 3559	n:10000
KS ci ratio: 4.234563e-02	ci left: 4.515919e-01	ci right 4.712306e-01	k: 4614	n:10000
KIAA1609   10000 perm   1 sec   (7024 perm/sec)   p_kst 4.614000e-01   p_cons 3.559000e-01   p_joint 5.673000e-01

Outputting figure to mutsig2_images.part000000000091/KIAA1609.3_1399_10000_0.4614_0.3559_0.5673.png
                gene_name: KIAA1609
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 63 percent done.
KIAA1737
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.974270e-02	ci left: 6.250738e-01	ci right 6.440477e-01	k: 6346	n:10000
KS ci ratio: 7.573360e-03	ci left: 9.602659e-01	ci right 9.676606e-01	k: 9641	n:10000
KIAA1737   10000 perm   1 sec   (7227 perm/sec)   p_kst 9.641000e-01   p_cons 6.346000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000091/KIAA1737.3_1212_10000_0.9641_0.6346_1.png
                gene_name: KIAA1737
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
KIAA1826
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.427232e-02	ci left: 8.765385e-01	ci right 8.892375e-01	k: 8830	n:10000
Cons ci ratio: 1.434813e-02	ci left: 8.754132e-01	ci right 8.881634e-01	k: 8819	n:10000
KS ci ratio: 2.053356e-02	ci left: 7.765116e-01	ci right 7.927222e-01	k: 7847	n:10000
KIAA1826   10000 perm   1 sec   (7057 perm/sec)   p_kst 7.847000e-01   p_cons 8.819000e-01   p_joint 8.830000e-01

Outputting figure to mutsig2_images.part000000000091/KIAA1826.3_1046_10000_0.7847_0.8819_0.883.png
                gene_name: KIAA1826
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 66 percent done.
KIF18A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.825929e-02	ci left: 2.394614e-01	ci right 2.564857e-01	k: 2479	n:10000
Cons ci ratio: 4.621809e-02	ci left: 4.086069e-01	ci right 4.280407e-01	k: 4183	n:10000
KS ci ratio: 8.383558e-02	ci left: 1.718257e-01	ci right 1.869615e-01	k: 1793	n:10000
KIF18A   10000 perm   2 sec   (6200 perm/sec)   p_kst 1.793000e-01   p_cons 4.183000e-01   p_joint 2.479000e-01

Outputting figure to mutsig2_images.part000000000091/KIF18A.3_2761_10000_0.1793_0.4183_0.2479.png
                gene_name: KIF18A
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 68 percent done.
KIF1C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.526781e-01	ci left: 2.052656e-02	ci right 2.655540e-02	k: 234	n:10000
Cons ci ratio: 4.602876e-01	ci left: 5.549202e-03	ci right 8.947365e-03	k: 71	n:10000
KS ci ratio: 1.324787e-01	ci left: 7.514340e-02	ci right 8.590246e-02	k: 804	n:10000
KIF1C   10000 perm   2 sec   (5971 perm/sec)   p_kst 8.040000e-02   p_cons 7.100000e-03   p_joint 2.340000e-02

Joint ci ratio: 2.604388e-01	ci left: 9.741161e-03	ci right 1.270351e-02	k: 223	n:20000
Cons ci ratio: 4.122633e-01	ci left: 3.575194e-03	ci right 5.473296e-03	k: 89	n:20000
KS ci ratio: 9.129435e-02	ci left: 8.053403e-02	ci right 8.828730e-02	k: 1687	n:20000
KIF1C   20000 perm   4 sec   (5353 perm/sec)   p_kst 8.435000e-02   p_cons 4.450000e-03   p_joint 1.115000e-02

Joint ci ratio: 2.458934e-01	ci left: 7.367115e-03	ci right 9.463093e-03	k: 251	n:30000
Cons ci ratio: 3.181960e-01	ci left: 4.233429e-03	ci right 5.864692e-03	k: 150	n:30000
KS ci ratio: 7.475181e-02	ci left: 8.081931e-02	ci right 8.712819e-02	k: 2518	n:30000
KIF1C   30000 perm   6 sec   (5128 perm/sec)   p_kst 8.393333e-02   p_cons 5.000000e-03   p_joint 8.366667e-03

Joint ci ratio: 3.238249e-01	ci left: 3.059825e-03	ci right 4.264004e-03	k: 145	n:40000
Cons ci ratio: 2.751095e-01	ci left: 4.355699e-03	ci right 5.767626e-03	k: 201	n:40000
KS ci ratio: 6.448252e-02	ci left: 8.184131e-02	ci right 8.731917e-02	k: 3382	n:40000
KIF1C   40000 perm   8 sec   (4981 perm/sec)   p_kst 8.455000e-02   p_cons 5.025000e-03   p_joint 3.625000e-03

Joint ci ratio: 1.937530e-01	ci left: 7.332995e-03	ci right 8.924907e-03	k: 405	n:50000
Cons ci ratio: 2.463113e-01	ci left: 4.419408e-03	ci right 5.679111e-03	k: 251	n:50000
KS ci ratio: 5.804885e-02	ci left: 8.114865e-02	ci right 8.601982e-02	k: 4178	n:50000
KIF1C   50000 perm   10 sec   (4864 perm/sec)   p_kst 8.356000e-02   p_cons 5.020000e-03   p_joint 8.100000e-03

Joint ci ratio: 1.557283e-01	ci left: 9.635717e-03	ci right 1.127882e-02	k: 626	n:60000
Cons ci ratio: 2.217041e-01	ci left: 4.608718e-03	ci right 5.773267e-03	k: 310	n:60000
KS ci ratio: 5.289226e-02	ci left: 8.164411e-02	ci right 8.609624e-02	k: 5031	n:60000
KIF1C   60000 perm   13 sec   (4761 perm/sec)   p_kst 8.385000e-02   p_cons 5.166667e-03   p_joint 1.043333e-02

Joint ci ratio: 6.079013e-02	ci left: 5.436436e-02	ci right 5.778684e-02	k: 3924	n:70000
Cons ci ratio: 1.660344e-01	ci left: 7.243795e-03	ci right 8.568913e-03	k: 552	n:70000
KS ci ratio: 4.885380e-02	ci left: 8.216715e-02	ci right 8.629596e-02	k: 5895	n:70000
KIF1C   70000 perm   15 sec   (4672 perm/sec)   p_kst 8.421429e-02   p_cons 7.885714e-03   p_joint 5.605714e-02

Joint ci ratio: 5.307889e-02	ci left: 6.212839e-02	ci right 6.552833e-02	k: 5105	n:80000
Cons ci ratio: 1.543296e-01	ci left: 7.382313e-03	ci right 8.628764e-03	k: 639	n:80000
KS ci ratio: 4.566634e-02	ci left: 8.240831e-02	ci right 8.627190e-02	k: 6746	n:80000
KIF1C   80000 perm   17 sec   (4579 perm/sec)   p_kst 8.432500e-02   p_cons 7.987500e-03   p_joint 6.381250e-02

Joint ci ratio: 5.243562e-02	ci left: 5.693154e-02	ci right 6.000811e-02	k: 5261	n:90000
Cons ci ratio: 1.461184e-01	ci left: 7.353378e-03	ci right 8.523116e-03	k: 713	n:90000
KS ci ratio: 4.304653e-02	ci left: 8.254770e-02	ci right 8.619025e-02	k: 7592	n:90000
KIF1C   90000 perm   20 sec   (4496 perm/sec)   p_kst 8.435556e-02   p_cons 7.922222e-03   p_joint 5.845556e-02

Joint ci ratio: 4.824488e-02	ci left: 6.043395e-02	ci right 6.343152e-02	k: 6192	n:100000
Cons ci ratio: 1.378632e-01	ci left: 7.466825e-03	ci right 8.581994e-03	k: 801	n:100000
KS ci ratio: 4.093211e-02	ci left: 8.228785e-02	ci right 8.573633e-02	k: 8400	n:100000
KIF1C   100000 perm   23 sec   (4421 perm/sec)   p_kst 8.400000e-02   p_cons 8.010000e-03   p_joint 6.192000e-02

Joint ci ratio: 4.532713e-02	ci left: 6.221879e-02	ci right 6.511336e-02	k: 7002	n:110000
Cons ci ratio: 1.315376e-01	ci left: 7.482014e-03	ci right 8.544172e-03	k: 880	n:110000
KS ci ratio: 3.902057e-02	ci left: 8.239424e-02	ci right 8.568228e-02	k: 9243	n:110000
KIF1C   110000 perm   25 sec   (4341 perm/sec)   p_kst 8.402727e-02   p_cons 8.000000e-03   p_joint 6.365455e-02

Joint ci ratio: 4.405592e-02	ci left: 6.052652e-02	ci right 6.326136e-02	k: 7426	n:120000
Cons ci ratio: 1.261424e-01	ci left: 7.479502e-03	ci right 8.494492e-03	k: 957	n:120000
KS ci ratio: 3.763168e-02	ci left: 8.136238e-02	ci right 8.449114e-02	k: 9950	n:120000
KIF1C   120000 perm   28 sec   (4273 perm/sec)   p_kst 8.291667e-02   p_cons 7.975000e-03   p_joint 6.188333e-02

Joint ci ratio: 4.234978e-02	ci left: 6.051985e-02	ci right 6.314589e-02	k: 8037	n:130000
Cons ci ratio: 1.207159e-01	ci left: 7.560202e-03	ci right 8.538856e-03	k: 1045	n:130000
KS ci ratio: 3.612477e-02	ci left: 8.155155e-02	ci right 8.455938e-02	k: 10796	n:130000
KIF1C   130000 perm   31 sec   (4203 perm/sec)   p_kst 8.304615e-02   p_cons 8.038462e-03   p_joint 6.182308e-02

Joint ci ratio: 3.427272e-02	ci left: 8.399068e-02	ci right 8.692652e-02	k: 11963	n:140000
Cons ci ratio: 1.168203e-01	ci left: 7.512254e-03	ci right 8.451153e-03	k: 1116	n:140000
KS ci ratio: 3.484100e-02	ci left: 8.147491e-02	ci right 8.437096e-02	k: 11608	n:140000
KIF1C   140000 perm   34 sec   (4141 perm/sec)   p_kst 8.291429e-02   p_cons 7.971429e-03   p_joint 8.545000e-02

Joint ci ratio: 3.360840e-02	ci left: 8.175415e-02	ci right 8.455532e-02	k: 12472	n:150000
Cons ci ratio: 1.128966e-01	ci left: 7.522977e-03	ci right 8.429530e-03	k: 1195	n:150000
KS ci ratio: 3.363782e-02	ci left: 8.162184e-02	ci right 8.442097e-02	k: 12452	n:150000
KIF1C   150000 perm   37 sec   (4082 perm/sec)   p_kst 8.301333e-02   p_cons 7.966667e-03   p_joint 8.314667e-02

Joint ci ratio: 3.307072e-02	ci left: 7.938848e-02	ci right 8.206423e-02	k: 12915	n:160000
Cons ci ratio: 1.091278e-01	ci left: 7.563223e-03	ci right 8.442245e-03	k: 1279	n:160000
KS ci ratio: 3.260744e-02	ci left: 8.149135e-02	ci right 8.419879e-02	k: 13254	n:160000
KIF1C   160000 perm   40 sec   (4019 perm/sec)   p_kst 8.283750e-02   p_cons 7.993750e-03   p_joint 8.071875e-02

Joint ci ratio: 3.321172e-02	ci left: 7.448191e-02	ci right 7.700317e-02	k: 12875	n:170000
Cons ci ratio: 1.052858e-01	ci left: 7.662189e-03	ci right 8.519420e-03	k: 1374	n:170000
KS ci ratio: 3.166506e-02	ci left: 8.138322e-02	ci right 8.400750e-02	k: 14057	n:170000
KIF1C   170000 perm   43 sec   (3961 perm/sec)   p_kst 8.268824e-02   p_cons 8.082353e-03   p_joint 7.573529e-02

Joint ci ratio: 3.550419e-02	ci left: 6.230057e-02	ci right 6.455796e-02	k: 11416	n:180000
Cons ci ratio: 1.025998e-01	ci left: 7.631518e-03	ci right 8.462221e-03	k: 1447	n:180000
KS ci ratio: 3.075708e-02	ci left: 8.149776e-02	ci right 8.404903e-02	k: 14898	n:180000
KIF1C   180000 perm   46 sec   (3907 perm/sec)   p_kst 8.276667e-02   p_cons 8.038889e-03   p_joint 6.342222e-02

Joint ci ratio: 3.493055e-02	ci left: 6.107631e-02	ci right 6.325286e-02	k: 11810	n:190000
Cons ci ratio: 9.971368e-02	ci left: 7.665916e-03	ci right 8.475516e-03	k: 1532	n:190000
KS ci ratio: 2.993854e-02	ci left: 8.152279e-02	ci right 8.400575e-02	k: 15724	n:190000
KIF1C   190000 perm   49 sec   (3855 perm/sec)   p_kst 8.275789e-02   p_cons 8.063158e-03   p_joint 6.215789e-02

Outputting figure to mutsig2_images.part000000000091/KIF1C.3_3396_190000_0.082758_0.0080632_0.062158.png
                gene_name: KIF1C
               theta_stop: 0.100 
                    nperm: 190000 
                     p_ks: 0.083 
        ci_ks_bounds_left: 0.082 
       ci_ks_bounds_right: 0.084 
                   p_cons: 0.0081 
      ci_cons_bounds_left: 0.0077 
     ci_cons_bounds_right: 0.0085 
                  p_joint: 0.062 
     ci_joint_bounds_left: 0.061 
    ci_joint_bounds_right: 0.063 

Current progress: 69 percent done.
KIF2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.759750e-02	ci left: 8.248311e-01	ci right 8.395749e-01	k: 8323	n:10000
KS ci ratio: 2.457181e-02	ci left: 7.089672e-01	ci right 7.267058e-01	k: 7179	n:10000
KIF2A   10000 perm   2 sec   (6657 perm/sec)   p_kst 7.179000e-01   p_cons 8.323000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000091/KIF2A.3_2319_10000_0.7179_0.8323_1.png
                gene_name: KIF2A
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
KIF4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.319667e-02	ci left: 5.725610e-01	ci right 5.919910e-01	k: 5823	n:10000
Cons ci ratio: 6.013027e-03	ci left: 9.739755e-01	ci right 9.799422e-01	k: 9771	n:10000
KS ci ratio: 4.390326e-02	ci left: 4.337306e-01	ci right 4.533023e-01	k: 4435	n:10000
KIF4A   10000 perm   2 sec   (5848 perm/sec)   p_kst 4.435000e-01   p_cons 9.771000e-01   p_joint 5.823000e-01

Outputting figure to mutsig2_images.part000000000091/KIF4A.3_3819_10000_0.4435_0.9771_0.5823.png
                gene_name: KIF4A
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 72 percent done.
KIF6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.317184e-02	ci left: 8.925171e-01	ci right 9.044496e-01	k: 8986	n:10000
Cons ci ratio: 2.425064e-02	ci left: 7.143166e-01	ci right 7.319532e-01	k: 7232	n:10000
KS ci ratio: 4.759331e-02	ci left: 3.944612e-01	ci right 4.137947e-01	k: 4041	n:10000
KIF6   10000 perm   2 sec   (6584 perm/sec)   p_kst 4.041000e-01   p_cons 7.232000e-01   p_joint 8.986000e-01

Outputting figure to mutsig2_images.part000000000091/KIF6.3_2537_10000_0.4041_0.7232_0.8986.png
                gene_name: KIF6
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 73 percent done.
KIF7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.653156e-02	ci left: 6.765988e-01	ci right 6.948929e-01	k: 6858	n:10000
Cons ci ratio: 1.317906e-02	ci left: 8.924146e-01	ci right 9.043522e-01	k: 8985	n:10000
KS ci ratio: 3.763418e-02	ci left: 5.104535e-01	ci right 5.301346e-01	k: 5203	n:10000
KIF7   10000 perm   2 sec   (5907 perm/sec)   p_kst 5.203000e-01   p_cons 8.985000e-01   p_joint 6.858000e-01

Outputting figure to mutsig2_images.part000000000091/KIF7.3_4104_10000_0.5203_0.8985_0.6858.png
                gene_name: KIF7
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.69 

Current progress: 75 percent done.
KIRREL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.096562e-02	ci left: 3.621174e-01	ci right 3.811575e-01	k: 3716	n:10000
Cons ci ratio: 1.572531e-01	ci left: 5.388306e-02	ci right 6.317620e-02	k: 584	n:10000
KS ci ratio: 3.732628e-02	ci left: 5.145559e-01	ci right 5.342298e-01	k: 5244	n:10000
KIRREL   10000 perm   2 sec   (6661 perm/sec)   p_kst 5.244000e-01   p_cons 5.840000e-02   p_joint 3.716000e-01

Joint ci ratio: 4.641260e-02	ci left: 2.567593e-01	ci right 2.690097e-01	k: 5257	n:20000
Cons ci ratio: 1.072141e-01	ci left: 5.928153e-02	ci right 6.604631e-02	k: 1252	n:20000
KS ci ratio: 2.637172e-02	ci left: 5.179009e-01	ci right 5.317919e-01	k: 10497	n:20000
KIRREL   20000 perm   3 sec   (5925 perm/sec)   p_kst 5.248500e-01   p_cons 6.260000e-02   p_joint 2.628500e-01

Joint ci ratio: 4.528275e-02	ci left: 1.953210e-01	ci right 2.044039e-01	k: 5995	n:30000
Cons ci ratio: 8.710876e-02	ci left: 6.047233e-02	ci right 6.601262e-02	k: 1896	n:30000
KS ci ratio: 2.147902e-02	ci left: 5.204308e-01	ci right 5.317641e-01	k: 15783	n:30000
KIRREL   30000 perm   5 sec   (5636 perm/sec)   p_kst 5.261000e-01   p_cons 6.320000e-02   p_joint 1.998333e-01

Outputting figure to mutsig2_images.part000000000091/KIRREL.3_2334_30000_0.5261_0.0632_0.19983.png
                gene_name: KIRREL
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.063 
      ci_cons_bounds_left: 0.060 
     ci_cons_bounds_right: 0.066 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.20 

Current progress: 76 percent done.
KIAA1539
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.526261e-02	ci left: 8.616169e-01	ci right 8.749678e-01	k: 8684	n:10000
Cons ci ratio: 1.024770e-02	ci left: 9.311281e-01	ci right 9.408160e-01	k: 9361	n:10000
KS ci ratio: 3.171070e-02	ci left: 5.947369e-01	ci right 6.140022e-01	k: 6044	n:10000
KIAA1539   10000 perm   1 sec   (7150 perm/sec)   p_kst 6.044000e-01   p_cons 9.361000e-01   p_joint 8.684000e-01

Outputting figure to mutsig2_images.part000000000091/KIAA1539.2_1645_10000_0.6044_0.9361_0.8684.png
                gene_name: KIAA1539
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 77 percent done.
KIAA1614
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.459254e-01	ci left: 6.236946e-02	ci right 7.228440e-02	k: 672	n:10000
Cons ci ratio: 1.537925e-01	ci left: 5.629122e-02	ci right 6.576649e-02	k: 609	n:10000
KS ci ratio: 6.340926e-02	ci left: 2.676508e-01	ci right 2.852796e-01	k: 2764	n:10000
KIAA1614   10000 perm   2 sec   (6278 perm/sec)   p_kst 2.764000e-01   p_cons 6.090000e-02   p_joint 6.720000e-02

Joint ci ratio: 9.438160e-02	ci left: 7.564046e-02	ci right 8.318235e-02	k: 1587	n:20000
Cons ci ratio: 1.072598e-01	ci left: 5.923278e-02	ci right 6.599506e-02	k: 1251	n:20000
KS ci ratio: 4.518166e-02	ci left: 2.672313e-01	ci right 2.796347e-01	k: 5468	n:20000
KIAA1614   20000 perm   4 sec   (5639 perm/sec)   p_kst 2.734000e-01   p_cons 6.255000e-02   p_joint 7.935000e-02

Joint ci ratio: 7.815505e-02	ci left: 7.433501e-02	ci right 8.041380e-02	k: 2320	n:30000
Cons ci ratio: 8.720695e-02	ci left: 6.034172e-02	ci right 6.587659e-02	k: 1892	n:30000
KS ci ratio: 3.704766e-02	ci left: 2.667051e-01	ci right 2.768058e-01	k: 8152	n:30000
KIAA1614   30000 perm   6 sec   (5379 perm/sec)   p_kst 2.717333e-01   p_cons 6.306667e-02   p_joint 7.733333e-02

Outputting figure to mutsig2_images.part000000000091/KIAA1614.2_3609_30000_0.27173_0.063067_0.077333.png
                gene_name: KIAA1614
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.063 
      ci_cons_bounds_left: 0.060 
     ci_cons_bounds_right: 0.066 
                  p_joint: 0.077 
     ci_joint_bounds_left: 0.074 
    ci_joint_bounds_right: 0.080 

Current progress: 79 percent done.
KIAA1919
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.781548e-02	ci left: 5.080524e-01	ci right 5.277371e-01	k: 5179	n:10000
KS ci ratio: 5.140488e-02	ci left: 3.581397e-01	ci right 3.771375e-01	k: 3676	n:10000
KIAA1919   10000 perm   1 sec   (7508 perm/sec)   p_kst 3.676000e-01   p_cons 5.179000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000091/KIAA1919.2_1573_10000_0.3676_0.5179_1.png
                gene_name: KIAA1919
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
KIAA1967
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.643801e-02	ci left: 5.265668e-01	ci right 5.462120e-01	k: 5364	n:10000
Cons ci ratio: 4.006591e-02	ci left: 4.791570e-01	ci right 4.988495e-01	k: 4890	n:10000
KS ci ratio: 1.520741e-01	ci left: 5.754436e-02	ci right 6.711256e-02	k: 622	n:10000
KIAA1967   10000 perm   1 sec   (6830 perm/sec)   p_kst 6.220000e-02   p_cons 4.890000e-01   p_joint 5.364000e-01

Joint ci ratio: 1.853524e-02	ci left: 6.845436e-01	ci right 6.974009e-01	k: 13820	n:20000
Cons ci ratio: 2.825664e-02	ci left: 4.833986e-01	ci right 4.973042e-01	k: 9807	n:20000
KS ci ratio: 1.086552e-01	ci left: 5.777083e-02	ci right 6.445747e-02	k: 1221	n:20000
KIAA1967   20000 perm   3 sec   (6076 perm/sec)   p_kst 6.105000e-02   p_cons 4.903500e-01   p_joint 6.910000e-01

Joint ci ratio: 4.041797e-02	ci left: 2.338519e-01	ci right 2.435321e-01	k: 7160	n:30000
Cons ci ratio: 2.319161e-02	ci left: 4.820952e-01	ci right 4.934405e-01	k: 14633	n:30000
KS ci ratio: 8.851174e-02	ci left: 5.864411e-02	ci right 6.410788e-02	k: 1840	n:30000
KIAA1967   30000 perm   5 sec   (5790 perm/sec)   p_kst 6.133333e-02   p_cons 4.877667e-01   p_joint 2.386667e-01

Outputting figure to mutsig2_images.part000000000091/KIAA1967.2_2852_30000_0.061333_0.48777_0.23867.png
                gene_name: KIAA1967
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.061 
        ci_ks_bounds_left: 0.059 
       ci_ks_bounds_right: 0.064 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 82 percent done.
KIF11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.330595e-02	ci left: 5.709563e-01	ci right 5.903967e-01	k: 5807	n:10000
KS ci ratio: 1.839835e-02	ci left: 8.118192e-01	ci right 8.269942e-01	k: 8195	n:10000
KIF11   10000 perm   2 sec   (6642 perm/sec)   p_kst 8.195000e-01   p_cons 5.807000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000091/KIF11.2_3259_10000_0.8195_0.5807_1.png
                gene_name: KIF11
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
KIF13A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.079331e-03	ci left: 9.648873e-01	ci right 9.718363e-01	k: 9685	n:10000
KS ci ratio: 3.453877e-02	ci left: 5.531109e-01	ci right 5.726525e-01	k: 5629	n:10000
KIF13A   10000 perm   2 sec   (5582 perm/sec)   p_kst 5.629000e-01   p_cons 9.685000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000091/KIF13A.2_5599_10000_0.5629_0.9685_1.png
                gene_name: KIF13A
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 85 percent done.
KIF15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.569727e-02	ci left: 5.367804e-01	ci right 5.563924e-01	k: 5466	n:10000
KS ci ratio: 8.457464e-03	ci left: 9.513780e-01	ci right 9.595540e-01	k: 9556	n:10000
KIF15   10000 perm   2 sec   (5967 perm/sec)   p_kst 9.556000e-01   p_cons 5.466000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000091/KIF15.2_4307_10000_0.9556_0.5466_1.png
                gene_name: KIF15
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
KIF18B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.122974e-02	ci left: 4.648713e-01	ci right 4.845434e-01	k: 4747	n:10000
KS ci ratio: 2.501509e-02	ci left: 7.016014e-01	ci right 7.194758e-01	k: 7106	n:10000
KIF18B   10000 perm   2 sec   (6641 perm/sec)   p_kst 7.106000e-01   p_cons 4.747000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000091/KIF18B.2_2627_10000_0.7106_0.4747_1.png
                gene_name: KIF18B
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
KIF20B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.808936e-02	ci left: 6.513244e-01	ci right 6.699820e-01	k: 6607	n:10000
Cons ci ratio: 4.590614e-02	ci left: 4.118954e-01	ci right 4.313503e-01	k: 4216	n:10000
KS ci ratio: 2.066714e-02	ci left: 7.742826e-01	ci right 7.905526e-01	k: 7825	n:10000
KIF20B   10000 perm   2 sec   (5461 perm/sec)   p_kst 7.825000e-01   p_cons 4.216000e-01   p_joint 6.607000e-01

Outputting figure to mutsig2_images.part000000000091/KIF20B.2_5471_10000_0.7825_0.4216_0.6607.png
                gene_name: KIF20B
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 89 percent done.
KIF22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.266726e-02	ci left: 2.171426e-01	ci right 2.336177e-01	k: 2253	n:10000
Cons ci ratio: 1.247955e-01	ci left: 8.416945e-02	ci right 9.547082e-02	k: 897	n:10000
KS ci ratio: 8.776711e-02	ci left: 1.589518e-01	ci right 1.736431e-01	k: 1662	n:10000
KIF22   10000 perm   1 sec   (6894 perm/sec)   p_kst 1.662000e-01   p_cons 8.970000e-02   p_joint 2.253000e-01

Joint ci ratio: 3.265392e-02	ci left: 4.118998e-01	ci right 4.256238e-01	k: 8375	n:20000
Cons ci ratio: 8.925935e-02	ci left: 8.401093e-02	ci right 9.190934e-02	k: 1758	n:20000
KS ci ratio: 6.252446e-02	ci left: 1.590899e-01	ci right 1.694079e-01	k: 3284	n:20000
KIF22   20000 perm   3 sec   (5851 perm/sec)   p_kst 1.642000e-01   p_cons 8.790000e-02   p_joint 4.187500e-01

Outputting figure to mutsig2_images.part000000000091/KIF22.2_2054_20000_0.1642_0.0879_0.41875.png
                gene_name: KIF22
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.088 
      ci_cons_bounds_left: 0.084 
     ci_cons_bounds_right: 0.092 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 90 percent done.
KIF25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.713756e-03	ci left: 9.891692e-01	ci right 9.929363e-01	k: 9912	n:10000
Cons ci ratio: 4.241384e-02	ci left: 4.507933e-01	ci right 4.704296e-01	k: 4606	n:10000
KS ci ratio: 2.296963e-02	ci left: 7.357303e-01	ci right 7.529272e-01	k: 7444	n:10000
KIF25   10000 perm   1 sec   (7465 perm/sec)   p_kst 7.444000e-01   p_cons 4.606000e-01   p_joint 9.912000e-01

Outputting figure to mutsig2_images.part000000000091/KIF25.2_1187_10000_0.7444_0.4606_0.9912.png
                gene_name: KIF25
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 92 percent done.
KIF26B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.848532e-02	ci left: 8.103969e-01	ci right 8.256173e-01	k: 8181	n:10000
KS ci ratio: 3.301279e-02	ci left: 5.752692e-01	ci right 5.946812e-01	k: 5850	n:10000
KIF26B   10000 perm   2 sec   (5289 perm/sec)   p_kst 5.850000e-01   p_cons 8.181000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000091/KIF26B.2_6387_10000_0.585_0.8181_1.png
                gene_name: KIF26B
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
KIF27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.132751e-02	ci left: 6.005602e-01	ci right 6.197756e-01	k: 6102	n:10000
Cons ci ratio: 1.870226e-02	ci left: 8.068419e-01	ci right 8.221744e-01	k: 8146	n:10000
KS ci ratio: 7.757470e-02	ci left: 1.954493e-01	ci right 2.113238e-01	k: 2033	n:10000
KIF27   10000 perm   2 sec   (6047 perm/sec)   p_kst 2.033000e-01   p_cons 8.146000e-01   p_joint 6.102000e-01

Outputting figure to mutsig2_images.part000000000091/KIF27.2_4274_10000_0.2033_0.8146_0.6102.png
                gene_name: KIF27
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 94 percent done.
KIF3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.231538e-01	ci left: 1.215729e-02	ci right 1.693165e-02	k: 144	n:10000
Cons ci ratio: 3.751414e-01	ci left: 8.776964e-03	ci right 1.291541e-02	k: 107	n:10000
KS ci ratio: 3.899868e-02	ci left: 4.926508e-01	ci right 5.123478e-01	k: 5025	n:10000
KIF3A   10000 perm   1 sec   (7189 perm/sec)   p_kst 5.025000e-01   p_cons 1.070000e-02   p_joint 1.440000e-02

Joint ci ratio: 2.391972e-01	ci left: 1.166433e-02	ci right 1.487948e-02	k: 264	n:20000
Cons ci ratio: 2.581180e-01	ci left: 9.928283e-03	ci right 1.291630e-02	k: 227	n:20000
KS ci ratio: 2.763349e-02	ci left: 4.945457e-01	ci right 5.084538e-01	k: 10030	n:20000
KIF3A   20000 perm   3 sec   (6356 perm/sec)   p_kst 5.015000e-01   p_cons 1.135000e-02   p_joint 1.320000e-02

Joint ci ratio: 1.979722e-01	ci left: 1.162205e-02	ci right 1.420689e-02	k: 386	n:30000
Cons ci ratio: 2.129699e-01	ci left: 9.976869e-03	ci right 1.238586e-02	k: 334	n:30000
KS ci ratio: 2.238194e-02	ci left: 4.998588e-01	ci right 5.112068e-01	k: 15166	n:30000
KIF3A   30000 perm   5 sec   (6028 perm/sec)   p_kst 5.055333e-01   p_cons 1.113333e-02   p_joint 1.286667e-02

Joint ci ratio: 1.595027e-01	ci left: 1.368751e-02	ci right 1.608368e-02	k: 594	n:40000
Cons ci ratio: 1.817148e-01	ci left: 1.045435e-02	ci right 1.256746e-02	k: 459	n:40000
KS ci ratio: 1.933452e-02	ci left: 5.018877e-01	ci right 5.117113e-01	k: 20272	n:40000
KIF3A   40000 perm   7 sec   (5818 perm/sec)   p_kst 5.068000e-01   p_cons 1.147500e-02   p_joint 1.485000e-02

Joint ci ratio: 1.420592e-01	ci left: 1.393349e-02	ci right 1.608335e-02	k: 749	n:50000
Cons ci ratio: 1.611196e-01	ci left: 1.075669e-02	ci right 1.266064e-02	k: 584	n:50000
KS ci ratio: 1.732045e-02	ci left: 5.016275e-01	ci right 5.104118e-01	k: 25301	n:50000
KIF3A   50000 perm   9 sec   (5653 perm/sec)   p_kst 5.060200e-01   p_cons 1.168000e-02   p_joint 1.498000e-02

Joint ci ratio: 1.307929e-01	ci left: 1.378448e-02	ci right 1.572954e-02	k: 884	n:60000
Cons ci ratio: 1.484790e-01	ci left: 1.063013e-02	ci right 1.235094e-02	k: 688	n:60000
KS ci ratio: 1.583895e-02	ci left: 5.011410e-01	ci right 5.091586e-01	k: 30309	n:60000
KIF3A   60000 perm   11 sec   (5497 perm/sec)   p_kst 5.051500e-01   p_cons 1.146667e-02   p_joint 1.473333e-02

Joint ci ratio: 1.207058e-01	ci left: 1.394621e-02	ci right 1.575148e-02	k: 1038	n:70000
Cons ci ratio: 1.382354e-01	ci left: 1.057154e-02	ci right 1.215507e-02	k: 794	n:70000
KS ci ratio: 1.464836e-02	ci left: 5.019747e-01	ci right 5.093963e-01	k: 35398	n:70000
KIF3A   70000 perm   13 sec   (5375 perm/sec)   p_kst 5.056857e-01   p_cons 1.134286e-02   p_joint 1.482857e-02

Joint ci ratio: 1.253594e-01	ci left: 1.131752e-02	ci right 1.284317e-02	k: 965	n:80000
Cons ci ratio: 1.302218e-01	ci left: 1.047019e-02	ci right 1.194058e-02	k: 895	n:80000
KS ci ratio: 1.368310e-02	ci left: 5.029166e-01	ci right 5.098579e-01	k: 40511	n:80000
KIF3A   80000 perm   15 sec   (5255 perm/sec)   p_kst 5.063875e-01   p_cons 1.118750e-02   p_joint 1.206250e-02

Joint ci ratio: 1.183417e-01	ci left: 1.133119e-02	ci right 1.276718e-02	k: 1083	n:90000
Cons ci ratio: 1.227128e-01	ci left: 1.052271e-02	ci right 1.190907e-02	k: 1008	n:90000
KS ci ratio: 1.290772e-02	ci left: 5.028390e-01	ci right 5.093828e-01	k: 45550	n:90000
KIF3A   90000 perm   18 sec   (5132 perm/sec)   p_kst 5.061111e-01   p_cons 1.120000e-02   p_joint 1.203333e-02

Joint ci ratio: 1.126693e-01	ci left: 1.128571e-02	ci right 1.264282e-02	k: 1195	n:100000
Cons ci ratio: 1.167908e-01	ci left: 1.048898e-02	ci right 1.179960e-02	k: 1113	n:100000
KS ci ratio: 1.223755e-02	ci left: 5.033261e-01	ci right 5.095335e-01	k: 50643	n:100000
KIF3A   100000 perm   20 sec   (5028 perm/sec)   p_kst 5.064300e-01   p_cons 1.113000e-02   p_joint 1.195000e-02

Joint ci ratio: 1.081185e-01	ci left: 1.117021e-02	ci right 1.245572e-02	k: 1298	n:110000
Cons ci ratio: 1.123049e-01	ci left: 1.033897e-02	ci right 1.157793e-02	k: 1204	n:110000
KS ci ratio: 1.168235e-02	ci left: 5.028590e-01	ci right 5.087771e-01	k: 55640	n:110000
KIF3A   110000 perm   22 sec   (4925 perm/sec)   p_kst 5.058182e-01   p_cons 1.094545e-02   p_joint 1.180000e-02

Joint ci ratio: 1.039280e-01	ci left: 1.110737e-02	ci right 1.233307e-02	k: 1405	n:120000
Cons ci ratio: 1.080883e-01	ci left: 1.025531e-02	ci right 1.143517e-02	k: 1300	n:120000
KS ci ratio: 1.119381e-02	ci left: 5.025919e-01	ci right 5.082578e-01	k: 60651	n:120000
KIF3A   120000 perm   25 sec   (4823 perm/sec)   p_kst 5.054250e-01   p_cons 1.083333e-02   p_joint 1.170833e-02

Joint ci ratio: 9.982315e-02	ci left: 1.113753e-02	ci right 1.231517e-02	k: 1523	n:130000
Cons ci ratio: 1.037890e-01	ci left: 1.029019e-02	ci right 1.142410e-02	k: 1410	n:130000
KS ci ratio: 1.074777e-02	ci left: 5.030244e-01	ci right 5.084676e-01	k: 65747	n:130000
KIF3A   130000 perm   27 sec   (4727 perm/sec)   p_kst 5.057462e-01   p_cons 1.084615e-02   p_joint 1.171538e-02

Joint ci ratio: 9.622854e-02	ci left: 1.115026e-02	ci right 1.228439e-02	k: 1639	n:140000
Cons ci ratio: 9.993177e-02	ci left: 1.032785e-02	ci right 1.142112e-02	k: 1521	n:140000
KS ci ratio: 1.034875e-02	ci left: 5.035131e-01	ci right 5.087581e-01	k: 70859	n:140000
KIF3A   140000 perm   30 sec   (4639 perm/sec)   p_kst 5.061357e-01   p_cons 1.086429e-02   p_joint 1.170714e-02

Outputting figure to mutsig2_images.part000000000091/KIF3A.2_2168_140000_0.50614_0.010864_0.011707.png
                gene_name: KIF3A
               theta_stop: 0.100 
                    nperm: 140000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.011 
      ci_cons_bounds_left: 0.010 
     ci_cons_bounds_right: 0.011 
                  p_joint: 0.012 
     ci_joint_bounds_left: 0.011 
    ci_joint_bounds_right: 0.012 

Current progress: 96 percent done.
KIF3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.367563e-03	ci left: 9.523170e-01	ci right 9.604144e-01	k: 9565	n:10000
Cons ci ratio: 4.808088e-02	ci left: 3.895819e-01	ci right 4.088768e-01	k: 3992	n:10000
KS ci ratio: 1.025873e-01	ci left: 1.208265e-01	ci right 1.339914e-01	k: 1273	n:10000
KIF3B   10000 perm   1 sec   (6853 perm/sec)   p_kst 1.273000e-01   p_cons 3.992000e-01   p_joint 9.565000e-01

Joint ci ratio: 6.041313e-02	ci left: 1.686204e-01	ci right 1.791746e-01	k: 3477	n:20000
Cons ci ratio: 3.411169e-02	ci left: 3.908575e-01	ci right 4.044723e-01	k: 7953	n:20000
KS ci ratio: 7.384239e-02	ci left: 1.189210e-01	ci right 1.280888e-01	k: 2469	n:20000
KIF3B   20000 perm   3 sec   (6100 perm/sec)   p_kst 1.234500e-01   p_cons 3.976500e-01   p_joint 1.738500e-01

Outputting figure to mutsig2_images.part000000000091/KIF3B.2_2276_20000_0.12345_0.39765_0.17385.png
                gene_name: KIF3B
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 97 percent done.
KIFC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.215377e-02	ci left: 3.514787e-01	ci right 3.704024e-01	k: 3609	n:10000
KS ci ratio: 1.784267e-02	ci left: 8.208650e-01	ci right 8.357433e-01	k: 8284	n:10000
KIFC1   10000 perm   1 sec   (6993 perm/sec)   p_kst 8.284000e-01   p_cons 3.609000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000091/KIFC1.2_2066_10000_0.8284_0.3609_1.png
                gene_name: KIFC1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 99 percent done.
KIR2DL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.763965e-02	ci left: 6.585713e-01	ci right 6.771308e-01	k: 6679	n:10000
Cons ci ratio: 7.905421e-03	ci left: 9.570190e-01	ci right 9.647096e-01	k: 9610	n:10000
KS ci ratio: 3.644533e-02	ci left: 5.264667e-01	ci right 5.461122e-01	k: 5363	n:10000
KIR2DL1   10000 perm   1 sec   (7484 perm/sec)   p_kst 5.363000e-01   p_cons 9.610000e-01   p_joint 6.679000e-01

Outputting figure to mutsig2_images.part000000000091/KIR2DL1.2_1079_10000_0.5363_0.961_0.6679.png
                gene_name: KIR2DL1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000091
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 91 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1652>
Subject: Job 8004205: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1652>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000092> was used as the working directory.
Started at Sun Nov 11 15:07:26 2012
Results reported at Sun Nov 11 15:14:10 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000092.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000092.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 92  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000092.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    431.16 sec.
    Max Memory :      4776 MB
    Max Swap   :      7043 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
92
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 92
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 92: processing genes 8234 - 8323
Calculating significance of each gene.
Using projection method.
8234	KLC1	9.211987e-01
8235	KLC2	8.540766e-01
8236	KLC3	1
8237	KLC4	7.578016e-01
8238	KLF1	1
8239	KLF10	2.463580e-01
8240	KLF11	6.074740e-01
8241	KLF12	2.793274e-01
8242	KLF13	1
8243	KLF14	1
8244	KLF15	7.792891e-01
8245	KLF16	1
8246	KLF17	1
8247	KLF3	1
8248	KLF4	6.159294e-01
8249	KLF5	9.483537e-02
8250	KLF6	1
8251	KLF7	6.565032e-01
8252	KLF8	3.956945e-01
8253	KLF9	5.637132e-01
8254	KLHDC1	2.435382e-01
8255	KLHDC10	1
8256	KLHDC2	1
8257	KLHDC3	1
8258	KLHDC4	7.676513e-01
8259	KLHDC5	5.270452e-01
8260	KLHDC7A	2.116582e-01
8261	KLHDC7B	2.840900e-01
8262	KLHDC8A	1
8263	KLHDC8B	1
8264	KLHDC9	7.695978e-01
8265	KLHL1	2.340531e-01
8266	KLHL10	8.290307e-01
8267	KLHL11	4.133112e-01
8268	KLHL12	7.743738e-01
8269	KLHL13	9.113840e-01
8270	KLHL14	1.499273e-02
8271	KLHL15	7.073376e-01
8272	KLHL17	8.475880e-01
8273	KLHL18	1
8274	KLHL2	7.657997e-01
8275	KLHL20	5.095353e-01
8276	KLHL21	1
8277	KLHL22	2.321598e-01
8278	KLHL23	3.076050e-01
8279	KLHL24	1
8280	KLHL25	6.148820e-01
8281	KLHL26	1
8282	KLHL28	1.577640e-01
8283	KLHL3	8.704009e-01
8284	KLHL30	1
8285	KLHL31	1.692535e-01
8286	KLHL32	6.339892e-01
8287	KLHL34	1
8288	KLHL35	6.797812e-01
8289	KLHL36	8.670677e-01
8290	KLHL38	1
8291	KLHL4	1.510952e-02
8292	KLHL5	8.690728e-01
8293	KLHL6	7.893656e-01
8294	KLHL7	1
8295	KLHL8	9.353369e-01
8296	KLHL9	8.389144e-02
8297	KLK1	1.145449e-01
8298	KLK10	1
8299	KLK11	2.559930e-01
8300	KLK12	4.758028e-01
8301	KLK13	4.752352e-01
8302	KLK14	1
8303	KLK15	1.080738e-02
8304	KLK2	2.519854e-01
8305	KLK3	1
8306	KLK4	1
8307	KLK5	2.009693e-01
8308	KLK6	1.324457e-01
8309	KLK7	1
8310	KLK8	1
8311	KLK9	1
8312	KLKB1	3.683171e-02
8313	KLRAQ1	6.652306e-01
8314	KLRB1	6.195988e-03
8315	KLRC1	1
8316	KLRC2	1
8317	KLRC3	1.377943e-01
8318	KLRC4	1
8319	KLRD1	5.617244e-01
8320	KLRF1	1.649851e-01
8321	KLRG1	2.546015e-01
8322	KLRG2	1
8323	KLRK1	1
Done

Running MutSig 2:
Scatter job 92: processing genes 8234 - 8323
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
KLHL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.098941e-02	ci left: 9.219324e-01	ci right 9.322172e-01	k: 9272	n:10000
KS ci ratio: 2.181702e-02	ci left: 7.550454e-01	ci right 7.718009e-01	k: 7635	n:10000
KLHL1   10000 perm   2 sec   (4584 perm/sec)   p_kst 7.635000e-01   p_cons 9.272000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000092/KLHL1.17_2291_10000_0.7635_0.9272_1.png
                gene_name: KLHL1
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 2 percent done.
KLHL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.438940e-02	ci left: 8.747995e-01	ci right 8.875775e-01	k: 8813	n:10000
KS ci ratio: 1.129536e-02	ci left: 9.180131e-01	ci right 9.285388e-01	k: 9234	n:10000
KLHL4   10000 perm   2 sec   (5119 perm/sec)   p_kst 9.234000e-01   p_cons 8.813000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000092/KLHL4.8_2271_10000_0.9234_0.8813_1.png
                gene_name: KLHL4
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 5 percent done.
KLHL14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.015643e-02	ci left: 7.827953e-01	ci right 7.988349e-01	k: 7909	n:10000
Cons ci ratio: 1.989420e-02	ci left: 7.871550e-01	ci right 8.030727e-01	k: 7952	n:10000
KS ci ratio: 3.297202e-02	ci left: 5.758711e-01	ci right 5.952790e-01	k: 5856	n:10000
KLHL14   10000 perm   2 sec   (5213 perm/sec)   p_kst 5.856000e-01   p_cons 7.952000e-01   p_joint 7.909000e-01

Outputting figure to mutsig2_images.part000000000092/KLHL14.7_1919_10000_0.5856_0.7952_0.7909.png
                gene_name: KLHL14
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 7 percent done.
KLKB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.255174e-02	ci left: 3.479998e-01	ci right 3.668833e-01	k: 3574	n:10000
Cons ci ratio: 5.596939e-02	ci left: 3.197920e-01	ci right 3.383077e-01	k: 3290	n:10000
KS ci ratio: 6.626932e-02	ci left: 2.505337e-01	ci right 2.678068e-01	k: 2591	n:10000
KLKB1   10000 perm   2 sec   (5497 perm/sec)   p_kst 2.591000e-01   p_cons 3.290000e-01   p_joint 3.574000e-01

Outputting figure to mutsig2_images.part000000000092/KLKB1.7_1973_10000_0.2591_0.329_0.3574.png
                gene_name: KLKB1
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 9 percent done.
KLHDC7A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.397717e-02	ci left: 3.358779e-01	ci right 3.546124e-01	k: 3452	n:10000
Cons ci ratio: 4.477642e-02	ci left: 4.240569e-01	ci right 4.435817e-01	k: 4338	n:10000
KS ci ratio: 5.990708e-02	ci left: 2.907303e-01	ci right 3.087865e-01	k: 2997	n:10000
KLHDC7A   10000 perm   2 sec   (4219 perm/sec)   p_kst 2.997000e-01   p_cons 4.338000e-01   p_joint 3.452000e-01

Outputting figure to mutsig2_images.part000000000092/KLHDC7A.5_2338_10000_0.2997_0.4338_0.3452.png
                gene_name: KLHDC7A
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 11 percent done.
KLHL22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.991607e-02	ci left: 1.524718e-01	ci right 1.669270e-01	k: 1596	n:10000
Cons ci ratio: 2.575415e-03	ci left: 9.943270e-01	ci right 9.969714e-01	k: 9958	n:10000
KS ci ratio: 1.523350e-01	ci left: 5.735153e-02	ci right 6.690551e-02	k: 620	n:10000
KLHL22   10000 perm   2 sec   (5588 perm/sec)   p_kst 6.200000e-02   p_cons 9.958000e-01   p_joint 1.596000e-01

Joint ci ratio: 7.442799e-02	ci left: 1.172484e-01	ci right 1.263619e-01	k: 2435	n:20000
Cons ci ratio: 1.884069e-03	ci left: 9.944165e-01	ci right 9.963351e-01	k: 19909	n:20000
KS ci ratio: 1.077657e-01	ci left: 5.869667e-02	ci right 6.543134e-02	k: 1240	n:20000
KLHL22   20000 perm   4 sec   (4992 perm/sec)   p_kst 6.200000e-02   p_cons 9.954500e-01   p_joint 1.217500e-01

Joint ci ratio: 5.769185e-02	ci left: 1.295057e-01	ci right 1.372322e-01	k: 4000	n:30000
Cons ci ratio: 1.708390e-03	ci left: 9.934534e-01	ci right 9.951821e-01	k: 29831	n:30000
KS ci ratio: 8.785268e-02	ci left: 5.949284e-02	ci right 6.499231e-02	k: 1866	n:30000
KLHL22   30000 perm   6 sec   (4775 perm/sec)   p_kst 6.220000e-02   p_cons 9.943667e-01   p_joint 1.333333e-01

Outputting figure to mutsig2_images.part000000000092/KLHL22.5_1929_30000_0.0622_0.99437_0.13333.png
                gene_name: KLHL22
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.062 
        ci_ks_bounds_left: 0.059 
       ci_ks_bounds_right: 0.065 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 14 percent done.
KLHL9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.264646e-02	ci left: 2.172413e-01	ci right 2.337190e-01	k: 2254	n:10000
Cons ci ratio: 1.445485e-01	ci left: 6.352868e-02	ci right 7.352445e-02	k: 684	n:10000
KS ci ratio: 1.785521e-02	ci left: 8.206616e-01	ci right 8.355467e-01	k: 8282	n:10000
KLHL9   10000 perm   2 sec   (5694 perm/sec)   p_kst 8.282000e-01   p_cons 6.840000e-02   p_joint 2.254000e-01

Joint ci ratio: 2.332809e-02	ci left: 5.784852e-01	ci right 5.921900e-01	k: 11707	n:20000
Cons ci ratio: 9.559662e-02	ci left: 7.383094e-02	ci right 8.129243e-02	k: 1550	n:20000
KS ci ratio: 1.327223e-02	ci left: 8.080313e-01	ci right 8.188774e-01	k: 16270	n:20000
KLHL9   20000 perm   4 sec   (5114 perm/sec)   p_kst 8.135000e-01   p_cons 7.750000e-02   p_joint 5.853500e-01

Outputting figure to mutsig2_images.part000000000092/KLHL9.5_1858_20000_0.8135_0.0775_0.58535.png
                gene_name: KLHL9
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.077 
      ci_cons_bounds_left: 0.074 
     ci_cons_bounds_right: 0.081 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.59 

Current progress: 16 percent done.
KLF5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.817824e-02	ci left: 1.929864e-01	ci right 2.087882e-01	k: 2008	n:10000
Cons ci ratio: 1.172051e-01	ci left: 9.467402e-02	ci right 1.065598e-01	k: 1005	n:10000
KS ci ratio: 5.389372e-02	ci left: 3.365732e-01	ci right 3.553166e-01	k: 3459	n:10000
KLF5   10000 perm   2 sec   (6185 perm/sec)   p_kst 3.459000e-01   p_cons 1.005000e-01   p_joint 2.008000e-01

Joint ci ratio: 6.872731e-02	ci left: 1.350709e-01	ci right 1.447341e-01	k: 2797	n:20000
Cons ci ratio: 8.262725e-02	ci left: 9.695524e-02	ci right 1.053611e-01	k: 2022	n:20000
KS ci ratio: 3.806650e-02	ci left: 3.398530e-01	ci right 3.530916e-01	k: 6929	n:20000
KLF5   20000 perm   4 sec   (5531 perm/sec)   p_kst 3.464500e-01   p_cons 1.011000e-01   p_joint 1.398500e-01

Outputting figure to mutsig2_images.part000000000092/KLF5.4_1390_20000_0.34645_0.1011_0.13985.png
                gene_name: KLF5
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.097 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.14 

Current progress: 18 percent done.
KLHL28
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.455385e-02	ci left: 8.723452e-01	ci right 8.852332e-01	k: 8789	n:10000
Cons ci ratio: 2.504549e-02	ci left: 7.010970e-01	ci right 7.189804e-01	k: 7101	n:10000
KS ci ratio: 1.639828e-02	ci left: 8.439706e-01	ci right 8.580243e-01	k: 8511	n:10000
KLHL28   10000 perm   2 sec   (5615 perm/sec)   p_kst 8.511000e-01   p_cons 7.101000e-01   p_joint 8.789000e-01

Outputting figure to mutsig2_images.part000000000092/KLHL28.4_1732_10000_0.8511_0.7101_0.8789.png
                gene_name: KLHL28
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.89 

Current progress: 20 percent done.
KLHL31
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.176417e-01	ci left: 1.261754e-02	ci right 1.747097e-02	k: 149	n:10000
Cons ci ratio: 2.543456e-01	ci left: 2.024526e-02	ci right 2.623692e-02	k: 231	n:10000
KS ci ratio: 1.265054e-01	ci left: 8.203252e-02	ci right 9.320908e-02	k: 875	n:10000
KLHL31   10000 perm   2 sec   (5706 perm/sec)   p_kst 8.750000e-02   p_cons 2.310000e-02   p_joint 1.490000e-02

Joint ci ratio: 1.978447e-01	ci left: 1.734330e-02	ci right 2.119826e-02	k: 384	n:20000
Cons ci ratio: 1.822815e-01	ci left: 2.053707e-02	ci right 2.470332e-02	k: 451	n:20000
KS ci ratio: 8.973561e-02	ci left: 8.317825e-02	ci right 9.104227e-02	k: 1741	n:20000
KLHL31   20000 perm   4 sec   (5122 perm/sec)   p_kst 8.705000e-02   p_cons 2.255000e-02   p_joint 1.920000e-02

Joint ci ratio: 1.138195e-01	ci left: 3.586462e-02	ci right 4.022542e-02	k: 1140	n:30000
Cons ci ratio: 1.468512e-01	ci left: 2.149402e-02	ci right 2.493250e-02	k: 695	n:30000
KS ci ratio: 7.311616e-02	ci left: 8.422757e-02	ci right 9.065259e-02	k: 2622	n:30000
KLHL31   30000 perm   6 sec   (4880 perm/sec)   p_kst 8.740000e-02   p_cons 2.316667e-02   p_joint 3.800000e-02

Joint ci ratio: 1.377263e-01	ci left: 1.848136e-02	ci right 2.123896e-02	k: 793	n:40000
Cons ci ratio: 1.271773e-01	ci left: 2.172272e-02	ci right 2.469705e-02	k: 927	n:40000
KS ci ratio: 6.356328e-02	ci left: 8.405851e-02	ci right 8.960165e-02	k: 3472	n:40000
KLHL31   40000 perm   8 sec   (4707 perm/sec)   p_kst 8.680000e-02   p_cons 2.317500e-02   p_joint 1.982500e-02

Joint ci ratio: 9.390127e-02	ci left: 3.209629e-02	ci right 3.527815e-02	k: 1683	n:50000
Cons ci ratio: 1.126134e-01	ci left: 2.232606e-02	ci right 2.500964e-02	k: 1182	n:50000
KS ci ratio: 5.709259e-02	ci left: 8.369481e-02	ci right 8.863336e-02	k: 4307	n:50000
KLHL31   50000 perm   11 sec   (4569 perm/sec)   p_kst 8.614000e-02   p_cons 2.364000e-02   p_joint 3.366000e-02

Joint ci ratio: 8.640363e-02	ci left: 3.173179e-02	ci right 3.461360e-02	k: 1989	n:60000
Cons ci ratio: 1.033850e-01	ci left: 2.218892e-02	ci right 2.462414e-02	k: 1403	n:60000
KS ci ratio: 5.218787e-02	ci left: 8.370251e-02	ci right 8.820430e-02	k: 5156	n:60000
KLHL31   60000 perm   13 sec   (4465 perm/sec)   p_kst 8.593333e-02   p_cons 2.338333e-02   p_joint 3.315000e-02

Joint ci ratio: 9.017580e-02	ci left: 2.509911e-02	ci right 2.748323e-02	k: 1839	n:70000
Cons ci ratio: 9.589599e-02	ci left: 2.219512e-02	ci right 2.444463e-02	k: 1631	n:70000
KS ci ratio: 4.833640e-02	ci left: 8.380596e-02	ci right 8.797130e-02	k: 6011	n:70000
KLHL31   70000 perm   16 sec   (4373 perm/sec)   p_kst 8.587143e-02   p_cons 2.330000e-02   p_joint 2.627143e-02

Outputting figure to mutsig2_images.part000000000092/KLHL31.4_1913_70000_0.085871_0.0233_0.026271.png
                gene_name: KLHL31
               theta_stop: 0.096 
                    nperm: 70000 
                     p_ks: 0.086 
        ci_ks_bounds_left: 0.084 
       ci_ks_bounds_right: 0.088 
                   p_cons: 0.023 
      ci_cons_bounds_left: 0.022 
     ci_cons_bounds_right: 0.024 
                  p_joint: 0.026 
     ci_joint_bounds_left: 0.025 
    ci_joint_bounds_right: 0.027 

Current progress: 23 percent done.
KLHL32
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.925190e-02	ci left: 1.544350e-01	ci right 1.689626e-01	k: 1616	n:10000
Cons ci ratio: 4.029101e-02	ci left: 4.763591e-01	ci right 4.960489e-01	k: 4862	n:10000
KS ci ratio: 1.303765e-01	ci left: 7.747081e-02	ci right 8.837361e-02	k: 828	n:10000
KLHL32   10000 perm   2 sec   (5483 perm/sec)   p_kst 8.280000e-02   p_cons 4.862000e-01   p_joint 1.616000e-01

Joint ci ratio: 8.466752e-02	ci left: 9.268686e-02	ci right 1.009308e-01	k: 1935	n:20000
Cons ci ratio: 2.811288e-02	ci left: 4.859476e-01	ci right 4.998544e-01	k: 9858	n:20000
KS ci ratio: 9.451095e-02	ci left: 7.544481e-02	ci right 8.297806e-02	k: 1583	n:20000
KLHL32   20000 perm   4 sec   (4944 perm/sec)   p_kst 7.915000e-02   p_cons 4.929000e-01   p_joint 9.675000e-02

Outputting figure to mutsig2_images.part000000000092/KLHL32.4_1903_20000_0.07915_0.4929_0.09675.png
                gene_name: KLHL32
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.079 
        ci_ks_bounds_left: 0.075 
       ci_ks_bounds_right: 0.083 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.097 
     ci_joint_bounds_left: 0.093 
    ci_joint_bounds_right: 0.10 

Current progress: 25 percent done.
KLHL7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.960179e-02	ci left: 6.272853e-01	ci right 6.462349e-01	k: 6368	n:10000
Cons ci ratio: 2.573434e-02	ci left: 6.897011e-01	ci right 7.077830e-01	k: 6988	n:10000
KS ci ratio: 3.867250e-02	ci left: 4.968503e-01	ci right 5.165458e-01	k: 5067	n:10000
KLHL7   10000 perm   2 sec   (5721 perm/sec)   p_kst 5.067000e-01   p_cons 6.988000e-01   p_joint 6.368000e-01

Outputting figure to mutsig2_images.part000000000092/KLHL7.4_1868_10000_0.5067_0.6988_0.6368.png
                gene_name: KLHL7
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 27 percent done.
KLK15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.427484e-02	ci left: 1.404072e-01	ci right 1.543988e-01	k: 1473	n:10000
Cons ci ratio: 6.299974e-02	ci left: 2.702248e-01	ci right 2.879041e-01	k: 2790	n:10000
KS ci ratio: 1.366775e-01	ci left: 7.078334e-02	ci right 8.126524e-02	k: 759	n:10000
KLK15   10000 perm   2 sec   (5851 perm/sec)   p_kst 7.590000e-02   p_cons 2.790000e-01   p_joint 1.473000e-01

Joint ci ratio: 8.299286e-02	ci left: 9.617007e-02	ci right 1.045465e-01	k: 2006	n:20000
Cons ci ratio: 4.543888e-02	ci left: 2.649975e-01	ci right 2.773691e-01	k: 5423	n:20000
KS ci ratio: 9.556323e-02	ci left: 7.387984e-02	ci right 8.134352e-02	k: 1551	n:20000
KLK15   20000 perm   4 sec   (5288 perm/sec)   p_kst 7.755000e-02   p_cons 2.711500e-01   p_joint 1.003000e-01

Outputting figure to mutsig2_images.part000000000092/KLK15.4_791_20000_0.07755_0.27115_0.1003.png
                gene_name: KLK15
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.078 
        ci_ks_bounds_left: 0.074 
       ci_ks_bounds_right: 0.081 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.096 
    ci_joint_bounds_right: 0.10 

Current progress: 30 percent done.
KLRAQ1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.173814e-02	ci left: 3.551569e-01	ci right 3.741220e-01	k: 3646	n:10000
Cons ci ratio: 2.434755e-02	ci left: 7.127015e-01	ci right 7.303692e-01	k: 7216	n:10000
KS ci ratio: 6.133555e-02	ci left: 2.810196e-01	ci right 2.989030e-01	k: 2899	n:10000
KLRAQ1   10000 perm   2 sec   (5325 perm/sec)   p_kst 2.899000e-01   p_cons 7.216000e-01   p_joint 3.646000e-01

Outputting figure to mutsig2_images.part000000000092/KLRAQ1.4_2431_10000_0.2899_0.7216_0.3646.png
                gene_name: KLRAQ1
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 32 percent done.
KLRB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.327743e-02	ci left: 7.305765e-01	ci right 7.478839e-01	k: 7393	n:10000
KS ci ratio: 2.456575e-02	ci left: 7.090681e-01	ci right 7.268048e-01	k: 7180	n:10000
KLRB1   10000 perm   2 sec   (5912 perm/sec)   p_kst 7.180000e-01   p_cons 7.393000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000092/KLRB1.4_701_10000_0.718_0.7393_1.png
                gene_name: KLRB1
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 34 percent done.
KLF10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.014468e-02	ci left: 9.323699e-01	ci right 9.419735e-01	k: 9373	n:10000
KS ci ratio: 1.853496e-02	ci left: 8.095843e-01	ci right 8.248305e-01	k: 8173	n:10000
KLF10   10000 perm   2 sec   (5942 perm/sec)   p_kst 8.173000e-01   p_cons 9.373000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000092/KLF10.3_1466_10000_0.8173_0.9373_1.png
                gene_name: KLF10
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 36 percent done.
KLF15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.388292e-02	ci left: 8.822699e-01	ci right 8.947028e-01	k: 8886	n:10000
KS ci ratio: 1.699539e-02	ci left: 8.344982e-01	ci right 8.489022e-01	k: 8418	n:10000
KLF15   10000 perm   2 sec   (6635 perm/sec)   p_kst 8.418000e-01   p_cons 8.886000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000092/KLF15.3_1259_10000_0.8418_0.8886_1.png
                gene_name: KLF15
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 39 percent done.
KLHDC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.782292e-02	ci left: 2.418334e-01	ci right 2.589122e-01	k: 2503	n:10000
KS ci ratio: 3.157165e-02	ci left: 5.968452e-01	ci right 6.160928e-01	k: 6065	n:10000
KLHDC1   10000 perm   2 sec   (6214 perm/sec)   p_kst 6.065000e-01   p_cons 2.503000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000092/KLHDC1.3_1273_10000_0.6065_0.2503_1.png
                gene_name: KLHDC1
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 41 percent done.
KLHL10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.857979e-02	ci left: 4.980503e-01	ci right 5.177451e-01	k: 5079	n:10000
KS ci ratio: 2.232405e-02	ci left: 7.465480e-01	ci right 7.635031e-01	k: 7551	n:10000
KLHL10   10000 perm   2 sec   (6438 perm/sec)   p_kst 7.551000e-01   p_cons 5.079000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000092/KLHL10.3_1847_10000_0.7551_0.5079_1.png
                gene_name: KLHL10
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 43 percent done.
KLHL11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.741593e-02	ci left: 3.962539e-01	ci right 4.156010e-01	k: 4059	n:10000
Cons ci ratio: 5.636461e-02	ci left: 3.167152e-01	ci right 3.351863e-01	k: 3259	n:10000
KS ci ratio: 7.573248e-02	ci left: 2.032352e-01	ci right 2.193333e-01	k: 2112	n:10000
KLHL11   10000 perm   2 sec   (5787 perm/sec)   p_kst 2.112000e-01   p_cons 3.259000e-01   p_joint 4.059000e-01

Outputting figure to mutsig2_images.part000000000092/KLHL11.3_2135_10000_0.2112_0.3259_0.4059.png
                gene_name: KLHL11
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 45 percent done.
KLHL20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.390563e-02	ci left: 3.364739e-01	ci right 3.552160e-01	k: 3458	n:10000
KS ci ratio: 2.216715e-02	ci left: 7.491777e-01	ci right 7.660720e-01	k: 7577	n:10000
KLHL20   10000 perm   2 sec   (5822 perm/sec)   p_kst 7.577000e-01   p_cons 3.458000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000092/KLHL20.3_1874_10000_0.7577_0.3458_1.png
                gene_name: KLHL20
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 48 percent done.
KLHL23
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.744606e-02	ci left: 8.272725e-01	ci right 8.419321e-01	k: 8347	n:10000
Cons ci ratio: 4.005790e-02	ci left: 4.792569e-01	ci right 4.989495e-01	k: 4891	n:10000
KS ci ratio: 3.132093e-02	ci left: 6.006606e-01	ci right 6.198751e-01	k: 6103	n:10000
KLHL23   10000 perm   2 sec   (6088 perm/sec)   p_kst 6.103000e-01   p_cons 4.891000e-01   p_joint 8.347000e-01

Outputting figure to mutsig2_images.part000000000092/KLHL23.3_1689_10000_0.6103_0.4891_0.8347.png
                gene_name: KLHL23
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 50 percent done.
KLHL26
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.070134e-01	ci left: 1.119342e-01	ci right 1.246891e-01	k: 1182	n:10000
KS ci ratio: 2.458394e-02	ci left: 7.087653e-01	ci right 7.265077e-01	k: 7177	n:10000
KLHL26   10000 perm   2 sec   (6164 perm/sec)   p_kst 7.177000e-01   p_cons 1.182000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 7.072369e-02	ci left: 1.284209e-01	ci right 1.378860e-01	k: 2662	n:20000
KS ci ratio: 1.732380e-02	ci left: 7.128147e-01	ci right 7.253216e-01	k: 14382	n:20000
KLHL26   20000 perm   4 sec   (5471 perm/sec)   p_kst 7.191000e-01   p_cons 1.331000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000092/KLHL26.3_1860_20000_0.7191_0.1331_1.png
                gene_name: KLHL26
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 52 percent done.
KLHL38
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.130045e-01	ci left: 1.012990e-01	ci right 1.135307e-01	k: 1073	n:10000
Cons ci ratio: 1.196672e-01	ci left: 9.107270e-02	ci right 1.027633e-01	k: 968	n:10000
KS ci ratio: 6.875699e-02	ci left: 2.367933e-01	ci right 2.537553e-01	k: 2452	n:10000
KLHL38   10000 perm   2 sec   (6563 perm/sec)   p_kst 2.452000e-01   p_cons 9.680000e-02   p_joint 1.073000e-01

Joint ci ratio: 1.271729e-01	ci left: 4.245914e-02	ci right 4.827396e-02	k: 906	n:20000
Cons ci ratio: 8.442632e-02	ci left: 9.317735e-02	ci right 1.014401e-01	k: 1945	n:20000
KS ci ratio: 4.933189e-02	ci left: 2.339950e-01	ci right 2.458807e-01	k: 4798	n:20000
KLHL38   20000 perm   3 sec   (5817 perm/sec)   p_kst 2.399000e-01   p_cons 9.725000e-02   p_joint 4.530000e-02

Joint ci ratio: 5.963318e-02	ci left: 1.221329e-01	ci right 1.296730e-01	k: 3776	n:30000
Cons ci ratio: 6.839052e-02	ci left: 9.531443e-02	ci right 1.020968e-01	k: 2960	n:30000
KS ci ratio: 4.022247e-02	ci left: 2.356062e-01	ci right 2.453108e-01	k: 7213	n:30000
KLHL38   30000 perm   5 sec   (5524 perm/sec)   p_kst 2.404333e-01   p_cons 9.866667e-02   p_joint 1.258667e-01

Outputting figure to mutsig2_images.part000000000092/KLHL38.3_1758_30000_0.24043_0.098667_0.12587.png
                gene_name: KLHL38
               theta_stop: 0.068 
                    nperm: 30000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.099 
      ci_cons_bounds_left: 0.095 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 55 percent done.
KLK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.689535e-02	ci left: 6.706551e-01	ci right 6.890400e-01	k: 6799	n:10000
Cons ci ratio: 2.653771e-02	ci left: 6.764980e-01	ci right 6.947937e-01	k: 6857	n:10000
KS ci ratio: 4.550381e-02	ci left: 4.161812e-01	ci right 4.356620e-01	k: 4259	n:10000
KLK1   10000 perm   2 sec   (6102 perm/sec)   p_kst 4.259000e-01   p_cons 6.857000e-01   p_joint 6.799000e-01

Outputting figure to mutsig2_images.part000000000092/KLK1.3_809_10000_0.4259_0.6857_0.6799.png
                gene_name: KLK1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 57 percent done.
KLC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.148972e-01	ci left: 2.873209e-02	ci right 3.574387e-02	k: 321	n:10000
Cons ci ratio: 2.363978e-02	ci left: 7.245152e-01	ci right 7.419487e-01	k: 7333	n:10000
KS ci ratio: 2.389735e-01	ci left: 2.306380e-02	ci right 2.941625e-02	k: 261	n:10000
KLC4   10000 perm   2 sec   (5326 perm/sec)   p_kst 2.610000e-02   p_cons 7.333000e-01   p_joint 3.210000e-02

Joint ci ratio: 1.382379e-01	ci left: 3.597246e-02	ci right 4.136272e-02	k: 772	n:20000
Cons ci ratio: 1.676311e-02	ci left: 7.260046e-01	ci right 7.383279e-01	k: 14644	n:20000
KS ci ratio: 1.649854e-01	ci left: 2.518148e-02	ci right 2.975729e-02	k: 548	n:20000
KLC4   20000 perm   4 sec   (5088 perm/sec)   p_kst 2.740000e-02   p_cons 7.322000e-01   p_joint 3.860000e-02

Joint ci ratio: 1.138714e-01	ci left: 3.583221e-02	ci right 4.019118e-02	k: 1139	n:30000
Cons ci ratio: 1.366151e-02	ci left: 7.278878e-01	ci right 7.379337e-01	k: 21988	n:30000
KS ci ratio: 1.359467e-01	ci left: 2.513068e-02	ci right 2.882836e-02	k: 808	n:30000
KLC4   30000 perm   6 sec   (4860 perm/sec)   p_kst 2.693333e-02   p_cons 7.329333e-01   p_joint 3.796667e-02

Joint ci ratio: 9.838063e-02	ci left: 3.629386e-02	ci right 4.007357e-02	k: 1526	n:40000
Cons ci ratio: 1.176427e-02	ci left: 7.307963e-01	ci right 7.394695e-01	k: 29406	n:40000
KS ci ratio: 1.170479e-01	ci left: 2.567637e-02	ci right 2.889275e-02	k: 1090	n:40000
KLC4   40000 perm   8 sec   (4775 perm/sec)   p_kst 2.725000e-02   p_cons 7.351500e-01   p_joint 3.815000e-02

Joint ci ratio: 8.713779e-02	ci left: 3.720242e-02	ci right 4.061138e-02	k: 1944	n:50000
Cons ci ratio: 1.050960e-02	ci left: 7.317309e-01	ci right 7.394817e-01	k: 36781	n:50000
KS ci ratio: 1.032125e-01	ci left: 2.659093e-02	ci right 2.950421e-02	k: 1401	n:50000
KLC4   50000 perm   11 sec   (4662 perm/sec)   p_kst 2.802000e-02   p_cons 7.356200e-01   p_joint 3.888000e-02

Joint ci ratio: 1.997596e-02	ci left: 3.869927e-01	ci right 3.948179e-01	k: 23454	n:60000
Cons ci ratio: 9.611674e-03	ci left: 7.313486e-01	ci right 7.384287e-01	k: 44094	n:60000
KS ci ratio: 9.363168e-02	ci left: 2.705279e-02	ci right 2.972642e-02	k: 1702	n:60000
KLC4   60000 perm   13 sec   (4579 perm/sec)   p_kst 2.836667e-02   p_cons 7.349000e-01   p_joint 3.909000e-01

Outputting figure to mutsig2_images.part000000000092/KLC4.2_2047_60000_0.028367_0.7349_0.3909.png
                gene_name: KLC4
               theta_stop: 0.094 
                    nperm: 60000 
                     p_ks: 0.028 
        ci_ks_bounds_left: 0.027 
       ci_ks_bounds_right: 0.030 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.39 

Current progress: 59 percent done.
KLF11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.269655e-02	ci left: 4.474996e-01	ci right 4.671253e-01	k: 4573	n:10000
Cons ci ratio: 2.656849e-02	ci left: 6.759943e-01	ci right 6.942978e-01	k: 6852	n:10000
KS ci ratio: 1.071161e-01	ci left: 1.117389e-01	ci right 1.244845e-01	k: 1180	n:10000
KLF11   10000 perm   2 sec   (6252 perm/sec)   p_kst 1.180000e-01   p_cons 6.852000e-01   p_joint 4.573000e-01

Joint ci ratio: 3.783232e-02	ci left: 3.426402e-01	ci right 3.559036e-01	k: 6985	n:20000
Cons ci ratio: 1.840948e-02	ci left: 6.874599e-01	ci right 7.002837e-01	k: 13878	n:20000
KS ci ratio: 7.610977e-02	ci left: 1.126255e-01	ci right 1.215862e-01	k: 2341	n:20000
KLF11   20000 perm   4 sec   (5052 perm/sec)   p_kst 1.170500e-01   p_cons 6.939000e-01   p_joint 3.492500e-01

Outputting figure to mutsig2_images.part000000000092/KLF11.2_1555_20000_0.11705_0.6939_0.34925.png
                gene_name: KLF11
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 61 percent done.
KLF12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.734719e-02	ci left: 3.969510e-01	ci right 4.163034e-01	k: 4066	n:10000
KS ci ratio: 1.370007e-02	ci left: 8.849326e-01	ci right 8.972385e-01	k: 8912	n:10000
KLF12   10000 perm   3 sec   (3784 perm/sec)   p_kst 8.912000e-01   p_cons 4.066000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000092/KLF12.2_1237_10000_0.8912_0.4066_1.png
                gene_name: KLF12
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 64 percent done.
KLF8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.372437e-02	ci left: 7.231012e-01	ci right 7.405635e-01	k: 7319	n:10000
Cons ci ratio: 1.409225e-02	ci left: 8.791989e-01	ci right 8.917756e-01	k: 8856	n:10000
KS ci ratio: 9.623583e-02	ci left: 1.354096e-01	ci right 1.491994e-01	k: 1422	n:10000
KLF8   10000 perm   2 sec   (6623 perm/sec)   p_kst 1.422000e-01   p_cons 8.856000e-01   p_joint 7.319000e-01

Outputting figure to mutsig2_images.part000000000092/KLF8.2_1104_10000_0.1422_0.8856_0.7319.png
                gene_name: KLF8
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 66 percent done.
KLHDC10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.341604e-02	ci left: 8.890312e-01	ci right 9.011376e-01	k: 8952	n:10000
KS ci ratio: 2.357332e-02	ci left: 7.256263e-01	ci right 7.430370e-01	k: 7344	n:10000
KLHDC10   10000 perm   2 sec   (6200 perm/sec)   p_kst 7.344000e-01   p_cons 8.952000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000092/KLHDC10.2_1369_10000_0.7344_0.8952_1.png
                gene_name: KLHDC10
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
KLHDC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.697687e-03	ci left: 9.376532e-01	ci right 9.468871e-01	k: 9424	n:10000
Cons ci ratio: 1.711004e-02	ci left: 8.326658e-01	ci right 8.471356e-01	k: 8400	n:10000
KS ci ratio: 2.171434e-02	ci left: 7.567657e-01	ci right 7.734796e-01	k: 7652	n:10000
KLHDC5   10000 perm   2 sec   (6340 perm/sec)   p_kst 7.652000e-01   p_cons 8.400000e-01   p_joint 9.424000e-01

Outputting figure to mutsig2_images.part000000000092/KLHDC5.2_1530_10000_0.7652_0.84_0.9424.png
                gene_name: KLHDC5
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 70 percent done.
KLHDC7B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.587498e-02	ci left: 6.873824e-01	ci right 7.055030e-01	k: 6965	n:10000
Cons ci ratio: 3.092077e-02	ci left: 6.067866e-01	ci right 6.259455e-01	k: 6164	n:10000
KS ci ratio: 4.822146e-02	ci left: 3.881880e-01	ci right 4.074716e-01	k: 3978	n:10000
KLHDC7B   10000 perm   2 sec   (6221 perm/sec)   p_kst 3.978000e-01   p_cons 6.164000e-01   p_joint 6.965000e-01

Outputting figure to mutsig2_images.part000000000092/KLHDC7B.2_1789_10000_0.3978_0.6164_0.6965.png
                gene_name: KLHDC7B
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 73 percent done.
KLHL15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.981480e-02	ci left: 7.884733e-01	ci right 8.043536e-01	k: 7965	n:10000
KS ci ratio: 4.170919e-03	ci left: 9.866479e-01	ci right 9.908601e-01	k: 9889	n:10000
KLHL15   10000 perm   2 sec   (6200 perm/sec)   p_kst 9.889000e-01   p_cons 7.965000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000092/KLHL15.2_1823_10000_0.9889_0.7965_1.png
                gene_name: KLHL15
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
KLHL18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.824610e-02	ci left: 6.488086e-01	ci right 6.674992e-01	k: 6582	n:10000
Cons ci ratio: 6.800406e-02	ci left: 2.408450e-01	ci right 2.579012e-01	k: 2493	n:10000
KS ci ratio: 6.879415e-02	ci left: 2.365957e-01	ci right 2.535531e-01	k: 2450	n:10000
KLHL18   10000 perm   2 sec   (6121 perm/sec)   p_kst 2.450000e-01   p_cons 2.493000e-01   p_joint 6.582000e-01

Outputting figure to mutsig2_images.part000000000092/KLHL18.2_1765_10000_0.245_0.2493_0.6582.png
                gene_name: KLHL18
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 77 percent done.
KLHL25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.458089e-02	ci left: 5.525096e-01	ci right 5.720541e-01	k: 5623	n:10000
Cons ci ratio: 4.325991e-02	ci left: 4.410133e-01	ci right 4.606154e-01	k: 4508	n:10000
KS ci ratio: 3.940630e-02	ci left: 4.874523e-01	ci right 5.071493e-01	k: 4973	n:10000
KLHL25   10000 perm   2 sec   (6167 perm/sec)   p_kst 4.973000e-01   p_cons 4.508000e-01   p_joint 5.623000e-01

Outputting figure to mutsig2_images.part000000000092/KLHL25.2_1774_10000_0.4973_0.4508_0.5623.png
                gene_name: KLHL25
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 80 percent done.
KLHL34
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.910833e-02	ci left: 3.795277e-01	ci right 3.987369e-01	k: 3891	n:10000
Cons ci ratio: 5.067232e-02	ci left: 3.648027e-01	ci right 3.838706e-01	k: 3743	n:10000
KS ci ratio: 1.109326e-01	ci left: 1.048095e-01	ci right 1.172181e-01	k: 1109	n:10000
KLHL34   10000 perm   2 sec   (6278 perm/sec)   p_kst 1.109000e-01   p_cons 3.743000e-01   p_joint 3.891000e-01

Joint ci ratio: 4.727834e-02	ci left: 2.497144e-01	ci right 2.618567e-01	k: 5115	n:20000
Cons ci ratio: 3.575039e-02	ci left: 3.686826e-01	ci right 3.821536e-01	k: 7508	n:20000
KS ci ratio: 7.814601e-02	ci left: 1.073661e-01	ci right 1.161471e-01	k: 2234	n:20000
KLHL34   20000 perm   4 sec   (5590 perm/sec)   p_kst 1.117000e-01   p_cons 3.754000e-01   p_joint 2.557500e-01

Outputting figure to mutsig2_images.part000000000092/KLHL34.2_1939_20000_0.1117_0.3754_0.25575.png
                gene_name: KLHL34
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 82 percent done.
KLHL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.410571e-02	ci left: 5.593253e-01	ci right 5.788345e-01	k: 5691	n:10000
KS ci ratio: 1.771079e-02	ci left: 8.230004e-01	ci right 8.378066e-01	k: 8305	n:10000
KLHL5   10000 perm   2 sec   (5870 perm/sec)   p_kst 8.305000e-01   p_cons 5.691000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000092/KLHL5.2_2312_10000_0.8305_0.5691_1.png
                gene_name: KLHL5
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
KLHL6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.362151e-02	ci left: 5.663433e-01	ci right 5.858123e-01	k: 5761	n:10000
Cons ci ratio: 6.039576e-02	ci left: 2.873607e-01	ci right 3.053581e-01	k: 2963	n:10000
KS ci ratio: 3.608784e-02	ci left: 5.313727e-01	ci right 5.510033e-01	k: 5412	n:10000
KLHL6   10000 perm   2 sec   (6157 perm/sec)   p_kst 5.412000e-01   p_cons 2.963000e-01   p_joint 5.761000e-01

Outputting figure to mutsig2_images.part000000000092/KLHL6.2_1894_10000_0.5412_0.2963_0.5761.png
                gene_name: KLHL6
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 86 percent done.
KLK11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.154618e-03	ci left: 9.545097e-01	ci right 9.624204e-01	k: 9586	n:10000
Cons ci ratio: 3.361463e-02	ci left: 5.664436e-01	ci right 5.859120e-01	k: 5762	n:10000
KS ci ratio: 2.534378e-02	ci left: 6.961546e-01	ci right 7.141257e-01	k: 7052	n:10000
KLK11   10000 perm   2 sec   (6664 perm/sec)   p_kst 7.052000e-01   p_cons 5.762000e-01   p_joint 9.586000e-01

Outputting figure to mutsig2_images.part000000000092/KLK11.2_948_10000_0.7052_0.5762_0.9586.png
                gene_name: KLK11
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 89 percent done.
KLK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.026571e-02	ci left: 2.882526e-01	ci right 3.062657e-01	k: 2972	n:10000
Cons ci ratio: 6.829591e-02	ci left: 2.392637e-01	ci right 2.562834e-01	k: 2477	n:10000
KS ci ratio: 3.657741e-02	ci left: 5.246647e-01	ci right 5.443152e-01	k: 5345	n:10000
KLK2   10000 perm   1 sec   (6720 perm/sec)   p_kst 5.345000e-01   p_cons 2.477000e-01   p_joint 2.972000e-01

Outputting figure to mutsig2_images.part000000000092/KLK2.2_843_10000_0.5345_0.2477_0.2972.png
                gene_name: KLK2
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 91 percent done.
KLK5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.819809e-03	ci left: 9.826368e-01	ci right 9.874746e-01	k: 9852	n:10000
Cons ci ratio: 4.102367e-02	ci left: 4.673682e-01	ci right 4.870451e-01	k: 4772	n:10000
KS ci ratio: 4.180446e-02	ci left: 4.579811e-01	ci right 4.776377e-01	k: 4678	n:10000
KLK5   10000 perm   1 sec   (6855 perm/sec)   p_kst 4.678000e-01   p_cons 4.772000e-01   p_joint 9.852000e-01

Outputting figure to mutsig2_images.part000000000092/KLK5.2_902_10000_0.4678_0.4772_0.9852.png
                gene_name: KLK5
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 93 percent done.
KLK6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.798081e-02	ci left: 3.905776e-01	ci right 4.098806e-01	k: 4002	n:10000
Cons ci ratio: 9.364237e-02	ci left: 1.420738e-01	ci right 1.561313e-01	k: 1490	n:10000
KS ci ratio: 5.363278e-02	ci left: 3.387587e-01	ci right 3.575298e-01	k: 3481	n:10000
KLK6   10000 perm   1 sec   (6688 perm/sec)   p_kst 3.481000e-01   p_cons 1.490000e-01   p_joint 4.002000e-01

Outputting figure to mutsig2_images.part000000000092/KLK6.2_755_10000_0.3481_0.149_0.4002.png
                gene_name: KLK6
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 95 percent done.
KLRC3
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 98 percent done.
KLRF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.290849e-03	ci left: 9.794135e-01	ci right 9.847004e-01	k: 9822	n:10000
Cons ci ratio: 9.481795e-03	ci left: 9.401429e-01	ci right 9.491959e-01	k: 9448	n:10000
KS ci ratio: 1.439627e-02	ci left: 8.746972e-01	ci right 8.874798e-01	k: 8812	n:10000
KLRF1   10000 perm   1 sec   (6722 perm/sec)   p_kst 8.812000e-01   p_cons 9.448000e-01   p_joint 9.822000e-01

Outputting figure to mutsig2_images.part000000000092/KLRF1.2_723_10000_0.8812_0.9448_0.9822.png
                gene_name: KLRF1
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000092
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 92 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1655>
Subject: Job 8004208: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1655>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000093> was used as the working directory.
Started at Sun Nov 11 15:07:26 2012
Results reported at Sun Nov 11 15:17:14 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000093.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000093.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 93  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000093.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    634.29 sec.
    Max Memory :      4678 MB
    Max Swap   :      7072 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
93
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 93
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 93: processing genes 8324 - 8414
Calculating significance of each gene.
Using projection method.
8324	KMO	3.559339e-01
8325	KNCN	1
8326	KNDC1	2.092469e-01
8327	KNG1	5.753594e-03
8328	KNTC1	1
8329	KPNA1	1
8330	KPNA2	4.963977e-01
8331	KPNA3	6.041180e-01
8332	KPNA4	1
8333	KPNA5	5.219520e-01
8334	KPNA6	9.085231e-01
8335	KPNB1	7.043472e-01
8336	KPRP	1.615702e-01
8337	KPTN	7.946775e-01
8338	KRAS	7.804076e-02
8339	KRBA1	1.413307e-01
8340	KRBA2	1
8341	KRCC1	1
8342	KREMEN1	1.028644e-01
8343	KREMEN2	1
8344	KRI1	5.004187e-01
8345	KRIT1	1
8346	KRR1	1
8347	KRT1	1
8348	KRT10	8.433462e-01
8349	KRT12	3.609072e-01
8350	KRT13	3.017928e-01
8351	KRT14	1.677092e-01
8352	KRT15	8.999329e-01
8353	KRT16	6.782839e-01
8354	KRT17	5.898888e-01
8355	KRT18	5.325974e-01
8356	KRT19	1
8357	KRT2	8.689134e-02
8358	KRT20	4.206087e-01
8359	KRT222	4.400833e-01
8360	KRT23	1.501920e-01
8361	KRT24	3.576765e-01
8362	KRT25	1
8363	KRT26	1
8364	KRT27	5.102084e-01
8365	KRT28	5.718240e-01
8366	KRT3	4.896312e-01
8367	KRT31	5.460230e-01
8368	KRT32	5.701637e-01
8369	KRT33A	6.729615e-01
8370	KRT33B	1
8371	KRT34	1
8372	KRT35	6.920878e-01
8373	KRT36	6.146078e-01
8374	KRT37	1
8375	KRT38	1
8376	KRT39	7.171660e-01
8377	KRT4	7.373669e-01
8378	KRT40	3.663725e-01
8379	KRT5	1
8380	KRT6A	1
8381	KRT6B	4.917566e-01
8382	KRT6C	8.701979e-01
8383	KRT7	1
8384	KRT71	4.833104e-01
8385	KRT72	4.003658e-01
8386	KRT73	6.616956e-02
8387	KRT74	7.629096e-01
8388	KRT75	9.275796e-01
8389	KRT76	5.313163e-01
8390	KRT77	2.119183e-01
8391	KRT78	1
8392	KRT79	3.160229e-01
8393	KRT8	8.929784e-01
8394	KRT80	1
8395	KRT81	7.718844e-02
8396	KRT82	6.536702e-01
8397	KRT83	6.291092e-01
8398	KRT84	9.960354e-02
8399	KRT85	8.364440e-01
8400	KRT86	5.347084e-01
8401	KRT9	6.504722e-01
8402	KRTAP1-1	3.531231e-01
8403	KRTAP1-3	1.127215e-01
8404	KRTAP1-5	2.698990e-01
8405	KRTAP10-1	1.301040e-01
8406	KRTAP10-10	1.323452e-01
8407	KRTAP10-11	1
8408	KRTAP10-12	4.222048e-01
8409	KRTAP10-2	7.074861e-01
8410	KRTAP10-3	1.520996e-01
8411	KRTAP10-4	3.056136e-01
8412	KRTAP10-5	5.915754e-01
8413	KRTAP10-6	6.404575e-01
8414	KRTAP10-7	5.497408e-04
Done

Running MutSig 2:
Scatter job 93: processing genes 8324 - 8414
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
KNG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.228902e-01	ci left: 2.664945e-02	ci right 3.342800e-02	k: 299	n:10000
Cons ci ratio: 1.842512e-01	ci left: 3.929883e-02	ci right 4.736993e-02	k: 432	n:10000
KS ci ratio: 1.255651e-01	ci left: 8.319799e-02	ci right 9.444288e-02	k: 887	n:10000
KNG1   10000 perm   2 sec   (5068 perm/sec)   p_kst 8.870000e-02   p_cons 4.320000e-02   p_joint 2.990000e-02

Joint ci ratio: 1.384243e-01	ci left: 3.587580e-02	ci right 4.125942e-02	k: 770	n:20000
Cons ci ratio: 1.314023e-01	ci left: 3.979437e-02	ci right 4.543958e-02	k: 851	n:20000
KS ci ratio: 8.755103e-02	ci left: 8.709768e-02	ci right 9.512166e-02	k: 1821	n:20000
KNG1   20000 perm   6 sec   (3221 perm/sec)   p_kst 9.105000e-02   p_cons 4.255000e-02   p_joint 3.850000e-02

Joint ci ratio: 1.065953e-01	ci left: 4.082963e-02	ci right 4.545937e-02	k: 1293	n:30000
Cons ci ratio: 1.115522e-01	ci left: 3.732391e-02	ci right 4.176583e-02	k: 1185	n:30000
KS ci ratio: 7.155763e-02	ci left: 8.767012e-02	ci right 9.420934e-02	k: 2727	n:30000
KNG1   30000 perm   9 sec   (3489 perm/sec)   p_kst 9.090000e-02   p_cons 3.950000e-02   p_joint 4.310000e-02

Joint ci ratio: 9.814697e-02	ci left: 3.646471e-02	ci right 4.025268e-02	k: 1533	n:40000
Cons ci ratio: 9.752065e-02	ci left: 3.692852e-02	ci right 4.073880e-02	k: 1552	n:40000
KS ci ratio: 6.188986e-02	ci left: 8.832199e-02	ci right 9.398752e-02	k: 3645	n:40000
KNG1   40000 perm   11 sec   (3623 perm/sec)   p_kst 9.112500e-02   p_cons 3.880000e-02   p_joint 3.832500e-02

Outputting figure to mutsig2_images.part000000000093/KNG1.9_2060_40000_0.091125_0.0388_0.038325.png
                gene_name: KNG1
               theta_stop: 0.098 
                    nperm: 40000 
                     p_ks: 0.091 
        ci_ks_bounds_left: 0.088 
       ci_ks_bounds_right: 0.094 
                   p_cons: 0.039 
      ci_cons_bounds_left: 0.037 
     ci_cons_bounds_right: 0.041 
                  p_joint: 0.038 
     ci_joint_bounds_left: 0.036 
    ci_joint_bounds_right: 0.040 

Current progress: 2 percent done.
KRBA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.448599e-02	ci left: 4.272478e-01	ci right 4.467889e-01	k: 4370	n:10000
Cons ci ratio: 2.516108e-02	ci left: 6.991805e-01	ci right 7.170981e-01	k: 7082	n:10000
KS ci ratio: 6.440648e-02	ci left: 2.615144e-01	ci right 2.790196e-01	k: 2702	n:10000
KRBA1   10000 perm   2 sec   (4888 perm/sec)   p_kst 2.702000e-01   p_cons 7.082000e-01   p_joint 4.370000e-01

Outputting figure to mutsig2_images.part000000000093/KRBA1.9_3156_10000_0.2702_0.7082_0.437.png
                gene_name: KRBA1
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 4 percent done.
KNDC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.675881e-02	ci left: 8.382657e-01	ci right 8.525325e-01	k: 8455	n:10000
Cons ci ratio: 2.176870e-02	ci left: 7.558549e-01	ci right 7.725909e-01	k: 7643	n:10000
KS ci ratio: 4.127937e-02	ci left: 4.642721e-01	ci right 4.839430e-01	k: 4741	n:10000
KNDC1   10000 perm   2 sec   (4260 perm/sec)   p_kst 4.741000e-01   p_cons 7.643000e-01   p_joint 8.455000e-01

Outputting figure to mutsig2_images.part000000000093/KNDC1.7_5370_10000_0.4741_0.7643_0.8455.png
                gene_name: KNDC1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 5 percent done.
KRTAP10-7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.323001e-01	ci left: 7.533730e-02	ci right 8.610844e-02	k: 806	n:10000
Cons ci ratio: 6.894319e-02	ci left: 2.358052e-01	ci right 2.527440e-01	k: 2442	n:10000
KS ci ratio: 1.520741e-01	ci left: 5.754436e-02	ci right 6.711256e-02	k: 622	n:10000
KRTAP10-7   10000 perm   2 sec   (5600 perm/sec)   p_kst 6.220000e-02   p_cons 2.442000e-01   p_joint 8.060000e-02

Joint ci ratio: 9.399636e-02	ci left: 7.622747e-02	ci right 8.379517e-02	k: 1599	n:20000
Cons ci ratio: 4.748411e-02	ci left: 2.480775e-01	ci right 2.601941e-01	k: 5082	n:20000
KS ci ratio: 1.094685e-01	ci left: 5.694265e-02	ci right 6.358591e-02	k: 1204	n:20000
KRTAP10-7   20000 perm   4 sec   (5042 perm/sec)   p_kst 6.020000e-02   p_cons 2.541000e-01   p_joint 7.995000e-02

Joint ci ratio: 7.098660e-02	ci left: 8.898196e-02	ci right 9.556391e-02	k: 2767	n:30000
Cons ci ratio: 3.867041e-02	ci left: 2.501745e-01	ci right 2.600730e-01	k: 7653	n:30000
KS ci ratio: 8.840946e-02	ci left: 5.877467e-02	ci right 6.424396e-02	k: 1844	n:30000
KRTAP10-7   30000 perm   6 sec   (4809 perm/sec)   p_kst 6.146667e-02   p_cons 2.551000e-01   p_joint 9.223333e-02

Outputting figure to mutsig2_images.part000000000093/KRTAP10-7.7_1121_30000_0.061467_0.2551_0.092233.png
                gene_name: KRTAP10-7
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.061 
        ci_ks_bounds_left: 0.059 
       ci_ks_bounds_right: 0.064 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.092 
     ci_joint_bounds_left: 0.089 
    ci_joint_bounds_right: 0.096 

Current progress: 7 percent done.
KRT73
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.016747e-01	ci left: 1.227823e-01	ci right 1.360344e-01	k: 1293	n:10000
Cons ci ratio: 2.811442e-02	ci left: 6.509218e-01	ci right 6.695847e-01	k: 6603	n:10000
KS ci ratio: 1.803670e-01	ci left: 4.101996e-02	ci right 4.924766e-02	k: 450	n:10000
KRT73   10000 perm   2 sec   (5764 perm/sec)   p_kst 4.500000e-02   p_cons 6.603000e-01   p_joint 1.293000e-01

Joint ci ratio: 8.383109e-02	ci left: 9.440373e-02	ci right 1.027134e-01	k: 1970	n:20000
Cons ci ratio: 2.117075e-02	ci left: 6.248209e-01	ci right 6.382409e-01	k: 12631	n:20000
KS ci ratio: 1.288181e-01	ci left: 4.139287e-02	ci right 4.714057e-02	k: 884	n:20000
KRT73   20000 perm   4 sec   (5159 perm/sec)   p_kst 4.420000e-02   p_cons 6.315500e-01   p_joint 9.850000e-02

Joint ci ratio: 5.984181e-02	ci left: 1.213761e-01	ci right 1.288966e-01	k: 3753	n:30000
Cons ci ratio: 1.722735e-02	ci left: 6.276503e-01	ci right 6.385906e-01	k: 18994	n:30000
KS ci ratio: 1.045433e-01	ci left: 4.242166e-02	ci right 4.713367e-02	k: 1342	n:30000
KRT73   30000 perm   6 sec   (4917 perm/sec)   p_kst 4.473333e-02   p_cons 6.331333e-01   p_joint 1.251000e-01

Joint ci ratio: 5.282054e-02	ci left: 1.178191e-01	ci right 1.242360e-01	k: 4840	n:40000
Cons ci ratio: 1.422604e-02	ci left: 6.502677e-01	ci right 6.596098e-01	k: 26198	n:40000
KS ci ratio: 9.076769e-02	ci left: 4.252433e-02	ci right 4.659212e-02	k: 1781	n:40000
KRT73   40000 perm   8 sec   (4745 perm/sec)   p_kst 4.452500e-02   p_cons 6.549500e-01   p_joint 1.210000e-01

Outputting figure to mutsig2_images.part000000000093/KRT73.6_1659_40000_0.044525_0.65495_0.121.png
                gene_name: KRT73
               theta_stop: 0.091 
                    nperm: 40000 
                     p_ks: 0.045 
        ci_ks_bounds_left: 0.043 
       ci_ks_bounds_right: 0.047 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 9 percent done.
KPRP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.201841e-02	ci left: 3.526716e-01	ci right 3.716088e-01	k: 3621	n:10000
Cons ci ratio: 6.986261e-03	ci left: 9.657293e-01	ci right 9.725938e-01	k: 9693	n:10000
KS ci ratio: 8.440949e-02	ci left: 1.698592e-01	ci right 1.849292e-01	k: 1773	n:10000
KPRP   10000 perm   2 sec   (5941 perm/sec)   p_kst 1.773000e-01   p_cons 9.693000e-01   p_joint 3.621000e-01

Outputting figure to mutsig2_images.part000000000093/KPRP.5_1744_10000_0.1773_0.9693_0.3621.png
                gene_name: KPRP
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 11 percent done.
KRT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.825115e-02	ci left: 3.025284e-01	ci right 3.207814e-01	k: 3116	n:10000
Cons ci ratio: 4.200647e-02	ci left: 4.555849e-01	ci right 4.752352e-01	k: 4654	n:10000
KS ci ratio: 9.038799e-02	ci left: 1.510978e-01	ci right 1.655018e-01	k: 1582	n:10000
KRT2   10000 perm   2 sec   (5600 perm/sec)   p_kst 1.582000e-01   p_cons 4.654000e-01   p_joint 3.116000e-01

Outputting figure to mutsig2_images.part000000000093/KRT2.5_1956_10000_0.1582_0.4654_0.3116.png
                gene_name: KRT2
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 12 percent done.
KPNA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.514891e-02	ci left: 6.993822e-01	ci right 7.172963e-01	k: 7084	n:10000
KS ci ratio: 2.958900e-02	ci left: 6.274864e-01	ci right 6.464337e-01	k: 6370	n:10000
KPNA4   10000 perm   2 sec   (5791 perm/sec)   p_kst 6.370000e-01   p_cons 7.084000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000093/KPNA4.4_1634_10000_0.637_0.7084_1.png
                gene_name: KPNA4
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 14 percent done.
KREMEN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.659824e-02	ci left: 8.408121e-01	ci right 8.549846e-01	k: 8480	n:10000
Cons ci ratio: 3.812710e-02	ci left: 5.039511e-01	ci right 5.236409e-01	k: 5138	n:10000
KS ci ratio: 1.515566e-02	ci left: 8.632507e-01	ci right 8.765330e-01	k: 8700	n:10000
KREMEN1   10000 perm   2 sec   (5717 perm/sec)   p_kst 8.700000e-01   p_cons 5.138000e-01   p_joint 8.480000e-01

Outputting figure to mutsig2_images.part000000000093/KREMEN1.4_1531_10000_0.87_0.5138_0.848.png
                gene_name: KREMEN1
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 16 percent done.
KRT13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.294291e-02	ci left: 3.446209e-01	ci right 3.634642e-01	k: 3540	n:10000
Cons ci ratio: 8.646081e-02	ci left: 1.630776e-01	ci right 1.779148e-01	k: 1704	n:10000
KS ci ratio: 4.590614e-02	ci left: 4.118954e-01	ci right 4.313503e-01	k: 4216	n:10000
KRT13   10000 perm   2 sec   (5811 perm/sec)   p_kst 4.216000e-01   p_cons 1.704000e-01   p_joint 3.540000e-01

Outputting figure to mutsig2_images.part000000000093/KRT13.4_1409_10000_0.4216_0.1704_0.354.png
                gene_name: KRT13
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 18 percent done.
KRT23
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.220526e-01	ci left: 8.776567e-02	ci right 9.927239e-02	k: 934	n:10000
Cons ci ratio: 2.102203e-01	ci left: 3.005970e-02	ci right 3.721534e-02	k: 335	n:10000
KS ci ratio: 5.763252e-02	ci left: 3.070909e-01	ci right 3.254162e-01	k: 3162	n:10000
KRT23   10000 perm   2 sec   (5923 perm/sec)   p_kst 3.162000e-01   p_cons 3.350000e-02   p_joint 9.340000e-02

Joint ci ratio: 7.670452e-02	ci left: 1.110523e-01	ci right 1.199599e-01	k: 2309	n:20000
Cons ci ratio: 1.508729e-01	ci left: 3.018195e-02	ci right 3.515513e-02	k: 652	n:20000
KS ci ratio: 4.151853e-02	ci left: 3.018536e-01	ci right 3.147022e-01	k: 6165	n:20000
KRT23   20000 perm   4 sec   (5286 perm/sec)   p_kst 3.082500e-01   p_cons 3.260000e-02   p_joint 1.154500e-01

Joint ci ratio: 9.148691e-02	ci left: 5.502246e-02	ci right 6.033028e-02	k: 1729	n:30000
Cons ci ratio: 1.192486e-01	ci left: 3.268985e-02	ci right 3.686754e-02	k: 1042	n:30000
KS ci ratio: 3.410487e-02	ci left: 3.004891e-01	ci right 3.109486e-01	k: 9171	n:30000
KRT23   30000 perm   6 sec   (5042 perm/sec)   p_kst 3.057000e-01   p_cons 3.473333e-02   p_joint 5.763333e-02

Joint ci ratio: 7.191098e-02	ci left: 6.665796e-02	ci right 7.165481e-02	k: 2765	n:40000
Cons ci ratio: 1.026498e-01	ci left: 3.336659e-02	ci right 3.700130e-02	k: 1406	n:40000
KS ci ratio: 2.948417e-02	ci left: 3.019338e-01	ci right 3.109943e-01	k: 12258	n:40000
KRT23   40000 perm   8 sec   (4858 perm/sec)   p_kst 3.064500e-01   p_cons 3.515000e-02   p_joint 6.912500e-02

Joint ci ratio: 6.380043e-02	ci left: 6.795592e-02	ci right 7.245413e-02	k: 3509	n:50000
Cons ci ratio: 9.148331e-02	ci left: 3.379731e-02	ci right 3.705692e-02	k: 1770	n:50000
KS ci ratio: 2.642833e-02	ci left: 3.015038e-01	ci right 3.095988e-01	k: 15277	n:50000
KRT23   50000 perm   11 sec   (4723 perm/sec)   p_kst 3.055400e-01   p_cons 3.540000e-02   p_joint 7.018000e-02

Outputting figure to mutsig2_images.part000000000093/KRT23.4_1301_50000_0.30554_0.0354_0.07018.png
                gene_name: KRT23
               theta_stop: 0.091 
                    nperm: 50000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.035 
      ci_cons_bounds_left: 0.034 
     ci_cons_bounds_right: 0.037 
                  p_joint: 0.070 
     ci_joint_bounds_left: 0.068 
    ci_joint_bounds_right: 0.072 

Current progress: 20 percent done.
KRT72
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.338123e-02	ci left: 5.698531e-01	ci right 5.893005e-01	k: 5796	n:10000
Cons ci ratio: 5.470120e-02	ci left: 3.299187e-01	ci right 3.485750e-01	k: 3392	n:10000
KS ci ratio: 2.435360e-02	ci left: 7.126006e-01	ci right 7.302702e-01	k: 7215	n:10000
KRT72   10000 perm   2 sec   (5533 perm/sec)   p_kst 7.215000e-01   p_cons 3.392000e-01   p_joint 5.796000e-01

Outputting figure to mutsig2_images.part000000000093/KRT72.4_1572_10000_0.7215_0.3392_0.5796.png
                gene_name: KRT72
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 21 percent done.
KRT77
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.568287e-02	ci left: 5.369808e-01	ci right 5.565920e-01	k: 5468	n:10000
Cons ci ratio: 4.233711e-02	ci left: 4.516917e-01	ci right 4.713307e-01	k: 4615	n:10000
KS ci ratio: 5.749955e-02	ci left: 3.080829e-01	ci right 3.264237e-01	k: 3172	n:10000
KRT77   10000 perm   2 sec   (5605 perm/sec)   p_kst 3.172000e-01   p_cons 4.615000e-01   p_joint 5.468000e-01

Outputting figure to mutsig2_images.part000000000093/KRT77.4_1773_10000_0.3172_0.4615_0.5468.png
                gene_name: KRT77
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 23 percent done.
KRT84
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.859028e-02	ci left: 2.376826e-01	ci right 2.546655e-01	k: 2461	n:10000
Cons ci ratio: 1.277887e-01	ci left: 8.047904e-02	ci right 9.156351e-02	k: 859	n:10000
KS ci ratio: 4.032327e-02	ci left: 4.759595e-01	ci right 4.956488e-01	k: 4858	n:10000
KRT84   10000 perm   2 sec   (5578 perm/sec)   p_kst 4.858000e-01   p_cons 8.590000e-02   p_joint 2.461000e-01

Joint ci ratio: 4.854685e-02	ci left: 2.398451e-01	ci right 2.518288e-01	k: 4916	n:20000
Cons ci ratio: 8.705255e-02	ci left: 8.802889e-02	ci right 9.609016e-02	k: 1840	n:20000
KS ci ratio: 2.828209e-02	ci left: 4.829488e-01	ci right 4.968542e-01	k: 9798	n:20000
KRT84   20000 perm   4 sec   (4968 perm/sec)   p_kst 4.899000e-01   p_cons 9.200000e-02   p_joint 2.458000e-01

Outputting figure to mutsig2_images.part000000000093/KRT84.4_1839_20000_0.4899_0.092_0.2458.png
                gene_name: KRT84
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.092 
      ci_cons_bounds_left: 0.088 
     ci_cons_bounds_right: 0.096 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 25 percent done.
KRTAP10-5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.027723e-01	ci left: 1.204354e-01	ci right 1.335827e-01	k: 1269	n:10000
Cons ci ratio: 1.138285e-02	ci left: 9.168793e-01	ci right 9.274733e-01	k: 9223	n:10000
KS ci ratio: 1.900600e-01	ci left: 3.691153e-02	ci right 4.475883e-02	k: 407	n:10000
KRTAP10-5   10000 perm   2 sec   (6009 perm/sec)   p_kst 4.070000e-02   p_cons 9.223000e-01   p_joint 1.269000e-01

Joint ci ratio: 6.457041e-02	ci left: 1.505524e-01	ci right 1.606479e-01	k: 3111	n:20000
Cons ci ratio: 8.027471e-03	ci left: 9.188608e-01	ci right 9.263158e-01	k: 18453	n:20000
KS ci ratio: 1.401345e-01	ci left: 3.500605e-02	ci right 4.032945e-02	k: 752	n:20000
KRTAP10-5   20000 perm   4 sec   (5407 perm/sec)   p_kst 3.760000e-02   p_cons 9.226500e-01   p_joint 1.555500e-01

Joint ci ratio: 6.535854e-02	ci left: 1.035565e-01	ci right 1.105865e-01	k: 3211	n:30000
Cons ci ratio: 6.524038e-03	ci left: 9.202308e-01	ci right 9.262869e-01	k: 27699	n:30000
KS ci ratio: 1.153520e-01	ci left: 3.492467e-02	ci right 3.923224e-02	k: 1111	n:30000
KRTAP10-5   30000 perm   6 sec   (5140 perm/sec)   p_kst 3.703333e-02   p_cons 9.233000e-01   p_joint 1.070333e-01

Joint ci ratio: 5.894691e-02	ci left: 9.660792e-02	ci right 1.025004e-01	k: 3981	n:40000
Cons ci ratio: 5.635803e-03	ci left: 9.210042e-01	ci right 9.262341e-01	k: 36946	n:40000
KS ci ratio: 9.995650e-02	ci left: 3.517134e-02	ci right 3.889625e-02	k: 1480	n:40000
KRTAP10-5   40000 perm   8 sec   (4965 perm/sec)   p_kst 3.700000e-02   p_cons 9.236500e-01   p_joint 9.952500e-02

Outputting figure to mutsig2_images.part000000000093/KRTAP10-5.4_820_40000_0.037_0.92365_0.099525.png
                gene_name: KRTAP10-5
               theta_stop: 0.100 
                    nperm: 40000 
                     p_ks: 0.037 
        ci_ks_bounds_left: 0.035 
       ci_ks_bounds_right: 0.039 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.100 
     ci_joint_bounds_left: 0.097 
    ci_joint_bounds_right: 0.10 

Current progress: 27 percent done.
KMO
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.844883e-02	ci left: 4.997504e-01	ci right 5.194440e-01	k: 5096	n:10000
Cons ci ratio: 3.797060e-03	ci left: 9.887288e-01	ci right 9.925772e-01	k: 9908	n:10000
KS ci ratio: 4.948217e-02	ci left: 3.759451e-01	ci right 3.951216e-01	k: 3855	n:10000
KMO   10000 perm   2 sec   (6096 perm/sec)   p_kst 3.855000e-01   p_cons 9.908000e-01   p_joint 5.096000e-01

Outputting figure to mutsig2_images.part000000000093/KMO.3_1521_10000_0.3855_0.9908_0.5096.png
                gene_name: KMO
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 29 percent done.
KNTC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.431467e-02	ci left: 4.291426e-01	ci right 4.486930e-01	k: 4389	n:10000
KS ci ratio: 1.789283e-02	ci left: 8.200516e-01	ci right 8.349571e-01	k: 8276	n:10000
KNTC1   10000 perm   2 sec   (4357 perm/sec)   p_kst 8.276000e-01   p_cons 4.389000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000093/KNTC1.3_6882_10000_0.8276_0.4389_1.png
                gene_name: KNTC1
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 30 percent done.
KPNB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.947729e-02	ci left: 4.865527e-01	ci right 5.062494e-01	k: 4964	n:10000
KS ci ratio: 1.031596e-02	ci left: 9.303005e-01	ci right 9.400441e-01	k: 9353	n:10000
KPNB1   10000 perm   2 sec   (5703 perm/sec)   p_kst 9.353000e-01   p_cons 4.964000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000093/KPNB1.3_2719_10000_0.9353_0.4964_1.png
                gene_name: KPNB1
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 32 percent done.
KRI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.969783e-02	ci left: 6.257775e-01	ci right 6.447437e-01	k: 6353	n:10000
KS ci ratio: 2.533769e-02	ci left: 6.962555e-01	ci right 7.142248e-01	k: 7053	n:10000
KRI1   10000 perm   2 sec   (5949 perm/sec)   p_kst 7.053000e-01   p_cons 6.353000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000093/KRI1.3_2206_10000_0.7053_0.6353_1.png
                gene_name: KRI1
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 34 percent done.
KRIT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.544133e-02	ci left: 3.239612e-01	ci right 3.425360e-01	k: 3332	n:10000
Cons ci ratio: 2.051534e-02	ci left: 7.768156e-01	ci right 7.930181e-01	k: 7850	n:10000
KS ci ratio: 6.075972e-02	ci left: 2.848834e-01	ci right 3.028368e-01	k: 2938	n:10000
KRIT1   10000 perm   2 sec   (5844 perm/sec)   p_kst 2.938000e-01   p_cons 7.850000e-01   p_joint 3.332000e-01

Outputting figure to mutsig2_images.part000000000093/KRIT1.3_2275_10000_0.2938_0.785_0.3332.png
                gene_name: KRIT1
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 36 percent done.
KRT12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.623583e-02	ci left: 1.354096e-01	ci right 1.491994e-01	k: 1422	n:10000
Cons ci ratio: 1.634260e-01	ci left: 4.993888e-02	ci right 5.892291e-02	k: 543	n:10000
KS ci ratio: 4.637034e-02	ci left: 4.070126e-01	ci right 4.264360e-01	k: 4167	n:10000
KRT12   10000 perm   2 sec   (5987 perm/sec)   p_kst 4.167000e-01   p_cons 5.430000e-02   p_joint 1.422000e-01

Joint ci ratio: 7.715840e-02	ci left: 1.098725e-01	ci right 1.187399e-01	k: 2285	n:20000
Cons ci ratio: 1.159005e-01	ci left: 5.095625e-02	ci right 5.727417e-02	k: 1081	n:20000
KS ci ratio: 3.251680e-02	ci left: 4.139449e-01	ci right 4.276781e-01	k: 8416	n:20000
KRT12   20000 perm   4 sec   (5292 perm/sec)   p_kst 4.208000e-01   p_cons 5.405000e-02   p_joint 1.142500e-01

Joint ci ratio: 6.094161e-02	ci left: 1.174942e-01	ci right 1.249127e-01	k: 3635	n:30000
Cons ci ratio: 9.414350e-02	ci left: 5.205562e-02	ci right 5.723105e-02	k: 1638	n:30000
KS ci ratio: 2.651077e-02	ci left: 4.159367e-01	ci right 4.271452e-01	k: 12646	n:30000
KRT12   30000 perm   6 sec   (5017 perm/sec)   p_kst 4.215333e-01   p_cons 5.460000e-02   p_joint 1.211667e-01

Outputting figure to mutsig2_images.part000000000093/KRT12.3_1517_30000_0.42153_0.0546_0.12117.png
                gene_name: KRT12
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.055 
      ci_cons_bounds_left: 0.052 
     ci_cons_bounds_right: 0.057 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 38 percent done.
KRT14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.472717e-03	ci left: 9.402467e-01	ci right 9.492921e-01	k: 9449	n:10000
KS ci ratio: 1.937393e-02	ci left: 7.957771e-01	ci right 8.114456e-01	k: 8037	n:10000
KRT14   10000 perm   2 sec   (6140 perm/sec)   p_kst 8.037000e-01   p_cons 9.449000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000093/KRT14.3_1451_10000_0.8037_0.9449_1.png
                gene_name: KRT14
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 39 percent done.
KRT16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.061000e-01	ci left: 1.136922e-01	ci right 1.265300e-01	k: 1200	n:10000
Cons ci ratio: 2.131928e-01	ci left: 2.920604e-02	ci right 3.626959e-02	k: 326	n:10000
KS ci ratio: 3.366971e-02	ci left: 5.656415e-01	ci right 5.851146e-01	k: 5754	n:10000
KRT16   10000 perm   2 sec   (6116 perm/sec)   p_kst 5.754000e-01   p_cons 3.260000e-02   p_joint 1.200000e-01

Joint ci ratio: 8.385469e-02	ci left: 9.435467e-02	ci right 1.026625e-01	k: 1969	n:20000
Cons ci ratio: 1.433295e-01	ci left: 3.346084e-02	ci right 3.867516e-02	k: 720	n:20000
KS ci ratio: 2.392175e-02	ci left: 5.662097e-01	ci right 5.799690e-01	k: 11462	n:20000
KRT16   20000 perm   4 sec   (5424 perm/sec)   p_kst 5.731000e-01   p_cons 3.600000e-02   p_joint 9.845000e-02

Joint ci ratio: 7.308563e-02	ci left: 8.429313e-02	ci right 9.072035e-02	k: 2624	n:30000
Cons ci ratio: 1.167214e-01	ci left: 3.411469e-02	ci right 3.837573e-02	k: 1086	n:30000
KS ci ratio: 1.950050e-02	ci left: 5.682806e-01	ci right 5.795051e-01	k: 17217	n:30000
KRT16   30000 perm   6 sec   (5166 perm/sec)   p_kst 5.739000e-01   p_cons 3.620000e-02   p_joint 8.746667e-02

Joint ci ratio: 6.548137e-02	ci left: 7.952619e-02	ci right 8.493464e-02	k: 3288	n:40000
Cons ci ratio: 1.006287e-01	ci left: 3.470784e-02	ci right 3.840983e-02	k: 1461	n:40000
KS ci ratio: 1.697111e-02	ci left: 5.666329e-01	ci right 5.763567e-01	k: 22860	n:40000
KRT16   40000 perm   8 sec   (4992 perm/sec)   p_kst 5.715000e-01   p_cons 3.652500e-02   p_joint 8.220000e-02

Joint ci ratio: 5.525277e-02	ci left: 8.892733e-02	ci right 9.400021e-02	k: 4572	n:50000
Cons ci ratio: 9.324431e-02	ci left: 3.254588e-02	ci right 3.574850e-02	k: 1706	n:50000
KS ci ratio: 1.519626e-02	ci left: 5.666077e-01	ci right 5.753040e-01	k: 28548	n:50000
KRT16   50000 perm   10 sec   (4869 perm/sec)   p_kst 5.709600e-01   p_cons 3.412000e-02   p_joint 9.144000e-02

Outputting figure to mutsig2_images.part000000000093/KRT16.3_1454_50000_0.57096_0.03412_0.09144.png
                gene_name: KRT16
               theta_stop: 0.093 
                    nperm: 50000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.034 
      ci_cons_bounds_left: 0.033 
     ci_cons_bounds_right: 0.036 
                  p_joint: 0.091 
     ci_joint_bounds_left: 0.089 
    ci_joint_bounds_right: 0.094 

Current progress: 41 percent done.
KRT24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.936779e-02	ci left: 7.958786e-01	ci right 8.115441e-01	k: 8038	n:10000
Cons ci ratio: 3.407791e-02	ci left: 5.597262e-01	ci right 5.792333e-01	k: 5695	n:10000
KS ci ratio: 1.286641e-02	ci left: 8.968261e-01	ci right 9.085381e-01	k: 9028	n:10000
KRT24   10000 perm   2 sec   (5479 perm/sec)   p_kst 9.028000e-01   p_cons 5.695000e-01   p_joint 8.038000e-01

Outputting figure to mutsig2_images.part000000000093/KRT24.3_1610_10000_0.9028_0.5695_0.8038.png
                gene_name: KRT24
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 43 percent done.
KRT6B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.384994e-02	ci left: 4.343291e-01	ci right 4.539035e-01	k: 4441	n:10000
KS ci ratio: 2.410536e-02	ci left: 7.167396e-01	ci right 7.343289e-01	k: 7256	n:10000
KRT6B   10000 perm   2 sec   (6024 perm/sec)   p_kst 7.256000e-01   p_cons 4.441000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000093/KRT6B.3_1731_10000_0.7256_0.4441_1.png
                gene_name: KRT6B
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 45 percent done.
KRT71
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.327738e-02	ci left: 4.408137e-01	ci right 4.604151e-01	k: 4506	n:10000
Cons ci ratio: 3.077713e-02	ci left: 6.089964e-01	ci right 6.281345e-01	k: 6186	n:10000
KS ci ratio: 8.224759e-02	ci left: 1.774321e-01	ci right 1.927518e-01	k: 1850	n:10000
KRT71   10000 perm   2 sec   (6210 perm/sec)   p_kst 1.850000e-01   p_cons 6.186000e-01   p_joint 4.506000e-01

Outputting figure to mutsig2_images.part000000000093/KRT71.3_1608_10000_0.185_0.6186_0.4506.png
                gene_name: KRT71
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 46 percent done.
KRT76
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.302053e-01	ci left: 7.766482e-02	ci right 8.857947e-02	k: 830	n:10000
Cons ci ratio: 1.269027e-01	ci left: 8.154699e-02	ci right 9.269490e-02	k: 870	n:10000
KS ci ratio: 9.302001e-02	ci left: 1.437406e-01	ci right 1.578635e-01	k: 1507	n:10000
KRT76   10000 perm   2 sec   (6086 perm/sec)   p_kst 1.507000e-01   p_cons 8.700000e-02   p_joint 8.300000e-02

Joint ci ratio: 1.061783e-01	ci left: 6.040274e-02	ci right 6.722475e-02	k: 1275	n:20000
Cons ci ratio: 9.326961e-02	ci left: 7.735273e-02	ci right 8.496956e-02	k: 1622	n:20000
KS ci ratio: 6.629463e-02	ci left: 1.438447e-01	ci right 1.537576e-01	k: 2975	n:20000
KRT76   20000 perm   4 sec   (5138 perm/sec)   p_kst 1.487500e-01   p_cons 8.110000e-02   p_joint 6.375000e-02

Joint ci ratio: 5.168963e-02	ci left: 1.566925e-01	ci right 1.650400e-01	k: 4825	n:30000
Cons ci ratio: 7.336161e-02	ci left: 8.370312e-02	ci right 9.011048e-02	k: 2606	n:30000
KS ci ratio: 5.404432e-02	ci left: 1.451528e-01	ci right 1.532486e-01	k: 4475	n:30000
KRT76   30000 perm   6 sec   (4981 perm/sec)   p_kst 1.491667e-01   p_cons 8.686667e-02   p_joint 1.608333e-01

Outputting figure to mutsig2_images.part000000000093/KRT76.3_1953_30000_0.14917_0.086867_0.16083.png
                gene_name: KRT76
               theta_stop: 0.073 
                    nperm: 30000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.087 
      ci_cons_bounds_left: 0.084 
     ci_cons_bounds_right: 0.090 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 48 percent done.
KRT79
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.389257e-02	ci left: 1.716291e-01	ci right 1.867583e-01	k: 1791	n:10000
Cons ci ratio: 1.641767e-02	ci left: 8.436649e-01	ci right 8.577302e-01	k: 8508	n:10000
KS ci ratio: 1.288571e-01	ci left: 7.921726e-02	ci right 9.022608e-02	k: 846	n:10000
KRT79   10000 perm   2 sec   (5922 perm/sec)   p_kst 8.460000e-02   p_cons 8.508000e-01   p_joint 1.791000e-01

Joint ci ratio: 5.876328e-02	ci left: 1.766247e-01	ci right 1.873680e-01	k: 3639	n:20000
Cons ci ratio: 1.199887e-02	ci left: 8.370730e-01	ci right 8.472274e-01	k: 16844	n:20000
KS ci ratio: 9.056383e-02	ci left: 8.175806e-02	ci right 8.956289e-02	k: 1712	n:20000
KRT79   20000 perm   4 sec   (5313 perm/sec)   p_kst 8.560000e-02   p_cons 8.422000e-01   p_joint 1.819500e-01

Outputting figure to mutsig2_images.part000000000093/KRT79.3_1644_20000_0.0856_0.8422_0.18195.png
                gene_name: KRT79
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.086 
        ci_ks_bounds_left: 0.082 
       ci_ks_bounds_right: 0.090 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 50 percent done.
KRT81
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.412510e-02	ci left: 1.407993e-01	ci right 1.548065e-01	k: 1477	n:10000
Cons ci ratio: 3.829530e-02	ci left: 5.017506e-01	ci right 5.214426e-01	k: 5116	n:10000
KS ci ratio: 2.108706e-01	ci left: 2.986994e-02	ci right 3.700523e-02	k: 333	n:10000
KRT81   10000 perm   2 sec   (5951 perm/sec)   p_kst 3.330000e-02   p_cons 5.116000e-01   p_joint 1.477000e-01

Joint ci ratio: 8.962294e-02	ci left: 8.337417e-02	ci right 9.124630e-02	k: 1745	n:20000
Cons ci ratio: 2.717582e-02	ci left: 5.028958e-01	ci right 5.168013e-01	k: 10197	n:20000
KS ci ratio: 1.513527e-01	ci left: 2.998929e-02	ci right 3.494786e-02	k: 648	n:20000
KRT81   20000 perm   4 sec   (5333 perm/sec)   p_kst 3.240000e-02   p_cons 5.098500e-01   p_joint 8.725000e-02

Joint ci ratio: 8.752818e-02	ci left: 5.991726e-02	ci right 6.543447e-02	k: 1879	n:30000
Cons ci ratio: 2.277174e-02	ci left: 4.912260e-01	ci right 5.025746e-01	k: 14907	n:30000
KS ci ratio: 1.248109e-01	ci left: 2.984322e-02	ci right 3.384812e-02	k: 954	n:30000
KRT81   30000 perm   6 sec   (5085 perm/sec)   p_kst 3.180000e-02   p_cons 4.969000e-01   p_joint 6.263333e-02

Joint ci ratio: 6.159291e-02	ci left: 8.911083e-02	ci right 9.479857e-02	k: 3677	n:40000
Cons ci ratio: 1.974779e-02	ci left: 4.913132e-01	ci right 5.011374e-01	k: 19849	n:40000
KS ci ratio: 1.083244e-01	ci left: 2.998029e-02	ci right 3.343813e-02	k: 1267	n:40000
KRT81   40000 perm   8 sec   (4923 perm/sec)   p_kst 3.167500e-02   p_cons 4.962250e-01   p_joint 9.192500e-02

Joint ci ratio: 6.435427e-02	ci left: 6.685259e-02	ci right 7.131760e-02	k: 3453	n:50000
Cons ci ratio: 1.766610e-02	ci left: 4.917478e-01	ci right 5.005326e-01	k: 24807	n:50000
KS ci ratio: 9.794653e-02	ci left: 2.951763e-02	ci right 3.257713e-02	k: 1551	n:50000
KRT81   50000 perm   10 sec   (4799 perm/sec)   p_kst 3.102000e-02   p_cons 4.961400e-01   p_joint 6.906000e-02

Outputting figure to mutsig2_images.part000000000093/KRT81.3_1554_50000_0.03102_0.49614_0.06906.png
                gene_name: KRT81
               theta_stop: 0.098 
                    nperm: 50000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.030 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.069 
     ci_joint_bounds_left: 0.067 
    ci_joint_bounds_right: 0.071 

Current progress: 52 percent done.
KRTAP10-1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.822146e-02	ci left: 3.881880e-01	ci right 4.074716e-01	k: 3978	n:10000
Cons ci ratio: 3.971484e-02	ci left: 4.835542e-01	ci right 5.032497e-01	k: 4934	n:10000
KS ci ratio: 6.753509e-02	ci left: 2.434149e-01	ci right 2.605298e-01	k: 2519	n:10000
KRTAP10-1   10000 perm   2 sec   (6559 perm/sec)   p_kst 2.519000e-01   p_cons 4.934000e-01   p_joint 3.978000e-01

Outputting figure to mutsig2_images.part000000000093/KRTAP10-1.3_853_10000_0.2519_0.4934_0.3978.png
                gene_name: KRTAP10-1
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 54 percent done.
KRTAP10-4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.815763e-02	ci left: 5.035510e-01	ci right 5.232412e-01	k: 5134	n:10000
KS ci ratio: 4.605704e-02	ci left: 4.103009e-01	ci right 4.297457e-01	k: 4200	n:10000
KRTAP10-4   10000 perm   1 sec   (6839 perm/sec)   p_kst 4.200000e-01   p_cons 5.134000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000093/KRTAP10-4.3_1210_10000_0.42_0.5134_1.png
                gene_name: KRTAP10-4
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 55 percent done.
KPNA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.372585e-02	ci left: 4.357256e-01	ci right 4.553061e-01	k: 4455	n:10000
KS ci ratio: 1.436877e-02	ci left: 8.751064e-01	ci right 8.878705e-01	k: 8816	n:10000
KPNA2   10000 perm   2 sec   (6312 perm/sec)   p_kst 8.816000e-01   p_cons 4.455000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000093/KPNA2.2_1630_10000_0.8816_0.4455_1.png
                gene_name: KPNA2
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 57 percent done.
KPNA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.665240e-01	ci left: 4.811345e-02	ci right 5.694952e-02	k: 524	n:10000
Cons ci ratio: 4.868751e-02	ci left: 3.836086e-01	ci right 4.028536e-01	k: 3932	n:10000
KS ci ratio: 2.824171e-01	ci left: 1.622887e-02	ci right 2.165650e-02	k: 188	n:10000
KPNA3   10000 perm   2 sec   (6344 perm/sec)   p_kst 1.880000e-02   p_cons 3.932000e-01   p_joint 5.240000e-02

Joint ci ratio: 1.146732e-01	ci left: 5.202621e-02	ci right 5.840388e-02	k: 1103	n:20000
Cons ci ratio: 3.461529e-02	ci left: 3.838795e-01	ci right 3.974523e-01	k: 7813	n:20000
KS ci ratio: 1.913577e-01	ci left: 1.858107e-02	ci right 2.256002e-02	k: 410	n:20000
KPNA3   20000 perm   4 sec   (5622 perm/sec)   p_kst 2.050000e-02   p_cons 3.906500e-01   p_joint 5.515000e-02

Joint ci ratio: 9.257069e-02	ci left: 5.378330e-02	ci right 5.903635e-02	k: 1691	n:30000
Cons ci ratio: 2.865289e-02	ci left: 3.786574e-01	ci right 3.896983e-01	k: 11525	n:30000
KS ci ratio: 1.568295e-01	ci left: 1.879820e-02	ci right 2.202895e-02	k: 611	n:30000
KPNA3   30000 perm   6 sec   (5302 perm/sec)   p_kst 2.036667e-02   p_cons 3.841667e-01   p_joint 5.636667e-02

Joint ci ratio: 8.045270e-02	ci left: 5.376660e-02	ci right 5.829812e-02	k: 2240	n:40000
Cons ci ratio: 2.472519e-02	ci left: 3.811004e-01	ci right 3.906662e-01	k: 15435	n:40000
KS ci ratio: 1.360745e-01	ci left: 1.894039e-02	ci right 2.172985e-02	k: 812	n:40000
KPNA3   40000 perm   8 sec   (5181 perm/sec)   p_kst 2.030000e-02   p_cons 3.858750e-01   p_joint 5.600000e-02

Joint ci ratio: 7.190826e-02	ci left: 5.407915e-02	ci right 5.813258e-02	k: 2804	n:50000
Cons ci ratio: 2.212327e-02	ci left: 3.814302e-01	ci right 3.899831e-01	k: 19285	n:50000
KS ci ratio: 1.230285e-01	ci left: 1.867441e-02	ci right 2.114177e-02	k: 994	n:50000
KPNA3   50000 perm   10 sec   (5074 perm/sec)   p_kst 1.988000e-02   p_cons 3.857000e-01   p_joint 5.608000e-02

Joint ci ratio: 6.575697e-02	ci left: 5.407500e-02	ci right 5.776810e-02	k: 3354	n:60000
Cons ci ratio: 2.025633e-02	ci left: 3.803885e-01	ci right 3.881893e-01	k: 23057	n:60000
KS ci ratio: 1.131338e-01	ci left: 1.850577e-02	ci right 2.074104e-02	k: 1176	n:60000
KPNA3   60000 perm   12 sec   (4951 perm/sec)   p_kst 1.960000e-02   p_cons 3.842833e-01   p_joint 5.590000e-02

Joint ci ratio: 6.112910e-02	ci left: 5.378707e-02	ci right 5.719275e-02	k: 3883	n:70000
Cons ci ratio: 1.872374e-02	ci left: 3.814358e-01	ci right 3.886595e-01	k: 26953	n:70000
KS ci ratio: 1.049041e-01	ci left: 1.853023e-02	ci right 2.059558e-02	k: 1368	n:70000
KPNA3   70000 perm   15 sec   (4688 perm/sec)   p_kst 1.954286e-02   p_cons 3.850429e-01   p_joint 5.547143e-02

Joint ci ratio: 5.715285e-02	ci left: 5.394802e-02	ci right 5.713431e-02	k: 4442	n:80000
Cons ci ratio: 1.748194e-02	ci left: 3.825496e-01	ci right 3.893087e-01	k: 30874	n:80000
KS ci ratio: 9.833974e-02	ci left: 1.851644e-02	ci right 2.044363e-02	k: 1557	n:80000
KPNA3   80000 perm   17 sec   (4616 perm/sec)   p_kst 1.946250e-02   p_cons 3.859250e-01   p_joint 5.552500e-02

Outputting figure to mutsig2_images.part000000000093/KPNA3.2_1634_80000_0.019463_0.38593_0.055525.png
                gene_name: KPNA3
               theta_stop: 0.098 
                    nperm: 80000 
                     p_ks: 0.019 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.020 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.056 
     ci_joint_bounds_left: 0.054 
    ci_joint_bounds_right: 0.057 

Current progress: 59 percent done.
KPNA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.878995e-01	ci left: 1.557819e-02	ci right 2.090773e-02	k: 181	n:10000
Cons ci ratio: 2.734118e-02	ci left: 6.634040e-01	ci right 6.818953e-01	k: 6727	n:10000
KS ci ratio: 3.733977e-01	ci left: 8.867630e-03	ci right 1.302464e-02	k: 108	n:10000
KPNA5   10000 perm   2 sec   (6348 perm/sec)   p_kst 1.080000e-02   p_cons 6.727000e-01   p_joint 1.810000e-02

Joint ci ratio: 2.007894e-01	ci left: 1.682030e-02	ci right 2.062146e-02	k: 373	n:20000
Cons ci ratio: 1.984302e-02	ci left: 6.545422e-01	ci right 6.677109e-01	k: 13223	n:20000
KS ci ratio: 2.628223e-01	ci left: 9.554158e-03	ci right 1.249060e-02	k: 219	n:20000
KPNA5   20000 perm   4 sec   (5621 perm/sec)   p_kst 1.095000e-02   p_cons 6.611500e-01   p_joint 1.865000e-02

Joint ci ratio: 1.636481e-01	ci left: 1.722918e-02	ci right 2.033167e-02	k: 562	n:30000
Cons ci ratio: 1.621101e-02	ci left: 6.555110e-01	ci right 6.662578e-01	k: 19827	n:30000
KS ci ratio: 2.149248e-01	ci left: 9.787485e-03	ci right 1.217530e-02	k: 328	n:30000
KPNA5   30000 perm   6 sec   (5343 perm/sec)   p_kst 1.093333e-02   p_cons 6.609000e-01   p_joint 1.873333e-02

Joint ci ratio: 1.396219e-01	ci left: 1.797425e-02	ci right 2.069616e-02	k: 772	n:40000
Cons ci ratio: 1.405412e-02	ci left: 6.557601e-01	ci right 6.650666e-01	k: 26417	n:40000
KS ci ratio: 1.831296e-01	ci left: 1.028726e-02	ci right 1.238458e-02	k: 452	n:40000
KPNA5   40000 perm   8 sec   (5151 perm/sec)   p_kst 1.130000e-02   p_cons 6.604250e-01   p_joint 1.930000e-02

Joint ci ratio: 1.268540e-01	ci left: 1.755001e-02	ci right 1.994632e-02	k: 936	n:50000
Cons ci ratio: 1.219086e-02	ci left: 6.699114e-01	ci right 6.781483e-01	k: 33702	n:50000
KS ci ratio: 1.674617e-01	ci left: 9.931681e-03	ci right 1.176577e-02	k: 541	n:50000
KPNA5   50000 perm   10 sec   (5009 perm/sec)   p_kst 1.082000e-02   p_cons 6.740400e-01   p_joint 1.872000e-02

Joint ci ratio: 1.157176e-01	ci left: 1.767966e-02	ci right 1.986724e-02	k: 1125	n:60000
Cons ci ratio: 1.146520e-02	ci left: 6.570124e-01	ci right 6.646053e-01	k: 39649	n:60000
KS ci ratio: 1.544881e-01	ci left: 9.795976e-03	ci right 1.145187e-02	k: 636	n:60000
KPNA5   60000 perm   12 sec   (4882 perm/sec)   p_kst 1.060000e-02   p_cons 6.608167e-01   p_joint 1.875000e-02

Joint ci ratio: 1.071200e-01	ci left: 1.776497e-02	ci right 1.978948e-02	k: 1313	n:70000
Cons ci ratio: 1.060633e-02	ci left: 6.576514e-01	ci right 6.646781e-01	k: 46282	n:70000
KS ci ratio: 1.449293e-01	ci left: 9.592809e-03	ci right 1.110534e-02	k: 723	n:70000
KPNA5   70000 perm   15 sec   (4774 perm/sec)   p_kst 1.032857e-02   p_cons 6.611714e-01   p_joint 1.875714e-02

Joint ci ratio: 1.003282e-01	ci left: 1.778473e-02	ci right 1.967540e-02	k: 1497	n:80000
Cons ci ratio: 9.934815e-03	ci left: 6.572692e-01	ci right 6.638441e-01	k: 52845	n:80000
KS ci ratio: 1.364405e-01	ci left: 9.515288e-03	ci right 1.092057e-02	k: 816	n:80000
KPNA5   80000 perm   17 sec   (4674 perm/sec)   p_kst 1.020000e-02   p_cons 6.605625e-01   p_joint 1.871250e-02

Joint ci ratio: 9.391818e-02	ci left: 1.809632e-02	ci right 1.989043e-02	k: 1708	n:90000
Cons ci ratio: 9.375377e-03	ci left: 6.570392e-01	ci right 6.632393e-01	k: 59413	n:90000
KS ci ratio: 1.273231e-01	ci left: 9.758236e-03	ci right 1.109582e-02	k: 937	n:90000
KPNA5   90000 perm   20 sec   (4583 perm/sec)   p_kst 1.041111e-02   p_cons 6.601444e-01   p_joint 1.897778e-02

Joint ci ratio: 8.873941e-02	ci left: 1.828996e-02	ci right 1.999809e-02	k: 1913	n:100000
Cons ci ratio: 8.872169e-03	ci left: 6.583170e-01	ci right 6.641937e-01	k: 66126	n:100000
KS ci ratio: 1.211554e-01	ci left: 9.731957e-03	ci right 1.099669e-02	k: 1035	n:100000
KPNA5   100000 perm   22 sec   (4498 perm/sec)   p_kst 1.035000e-02   p_cons 6.612600e-01   p_joint 1.913000e-02

Joint ci ratio: 8.474115e-02	ci left: 1.827257e-02	ci right 1.989838e-02	k: 2098	n:110000
Cons ci ratio: 8.455099e-03	ci left: 6.586766e-01	ci right 6.642785e-01	k: 72763	n:110000
KS ci ratio: 1.159083e-01	ci left: 9.694080e-03	ci right 1.089559e-02	k: 1131	n:110000
KPNA5   110000 perm   25 sec   (4417 perm/sec)   p_kst 1.028182e-02   p_cons 6.614818e-01   p_joint 1.907273e-02

Joint ci ratio: 8.107610e-02	ci left: 1.833303e-02	ci right 1.989033e-02	k: 2292	n:120000
Cons ci ratio: 8.082469e-03	ci left: 6.594993e-01	ci right 6.648596e-01	k: 79462	n:120000
KS ci ratio: 1.111517e-01	ci left: 9.687814e-03	ci right 1.083604e-02	k: 1230	n:120000
KPNA5   120000 perm   28 sec   (4339 perm/sec)   p_kst 1.025000e-02   p_cons 6.621833e-01   p_joint 1.910000e-02

Joint ci ratio: 7.778509e-02	ci left: 1.841566e-02	ci right 1.991359e-02	k: 2490	n:130000
Cons ci ratio: 7.773112e-03	ci left: 6.591592e-01	ci right 6.643105e-01	k: 86026	n:130000
KS ci ratio: 1.064122e-01	ci left: 9.780725e-03	ci right 1.088743e-02	k: 1342	n:130000
KPNA5   130000 perm   31 sec   (4262 perm/sec)   p_kst 1.032308e-02   p_cons 6.617385e-01   p_joint 1.915385e-02

Joint ci ratio: 7.520775e-02	ci left: 1.831930e-02	ci right 1.975786e-02	k: 2664	n:140000
Cons ci ratio: 7.482521e-03	ci left: 6.597228e-01	ci right 6.646848e-01	k: 92709	n:140000
KS ci ratio: 1.025883e-01	ci left: 9.791636e-03	ci right 1.085736e-02	k: 1444	n:140000
KPNA5   140000 perm   33 sec   (4188 perm/sec)   p_kst 1.031429e-02   p_cons 6.622071e-01   p_joint 1.902857e-02

Joint ci ratio: 7.271418e-02	ci left: 1.831508e-02	ci right 1.970360e-02	k: 2850	n:150000
Cons ci ratio: 7.230644e-03	ci left: 6.596932e-01	ci right 6.644872e-01	k: 99314	n:150000
KS ci ratio: 9.937643e-02	ci left: 9.756189e-03	ci right 1.078287e-02	k: 1539	n:150000
KPNA5   150000 perm   36 sec   (4118 perm/sec)   p_kst 1.026000e-02   p_cons 6.620933e-01   p_joint 1.900000e-02

Outputting figure to mutsig2_images.part000000000093/KPNA5.2_1676_150000_0.01026_0.66209_0.019.png
                gene_name: KPNA5
               theta_stop: 0.099 
                    nperm: 150000 
                     p_ks: 0.010 
        ci_ks_bounds_left: 0.0098 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.019 
     ci_joint_bounds_left: 0.018 
    ci_joint_bounds_right: 0.020 

Current progress: 61 percent done.
KRAS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.491176e-02	ci left: 7.033165e-01	ci right 7.211597e-01	k: 7123	n:10000
Cons ci ratio: 4.433266e-02	ci left: 4.289432e-01	ci right 4.484926e-01	k: 4387	n:10000
KS ci ratio: 4.491338e-02	ci left: 4.225613e-01	ci right 4.420781e-01	k: 4323	n:10000
KRAS   10000 perm   1 sec   (6747 perm/sec)   p_kst 4.323000e-01   p_cons 4.387000e-01   p_joint 7.123000e-01

Outputting figure to mutsig2_images.part000000000093/KRAS.2_707_10000_0.4323_0.4387_0.7123.png
                gene_name: KRAS
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 62 percent done.
KRT17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.102486e-02	ci left: 7.683064e-01	ci right 7.847323e-01	k: 7766	n:10000
Cons ci ratio: 1.977813e-02	ci left: 7.890818e-01	ci right 8.049448e-01	k: 7971	n:10000
KS ci ratio: 5.083495e-02	ci left: 3.633108e-01	ci right 3.823633e-01	k: 3728	n:10000
KRT17   10000 perm   1 sec   (6771 perm/sec)   p_kst 3.728000e-01   p_cons 7.971000e-01   p_joint 7.766000e-01

Outputting figure to mutsig2_images.part000000000093/KRT17.2_1331_10000_0.3728_0.7971_0.7766.png
                gene_name: KRT17
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 64 percent done.
KRT18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.677757e-02	ci left: 3.135397e-01	ci right 3.319637e-01	k: 3227	n:10000
Cons ci ratio: 6.909288e-02	ci left: 2.350148e-01	ci right 2.519349e-01	k: 2434	n:10000
KS ci ratio: 1.796799e-02	ci left: 8.188316e-01	ci right 8.337778e-01	k: 8264	n:10000
KRT18   10000 perm   2 sec   (6493 perm/sec)   p_kst 8.264000e-01   p_cons 2.434000e-01   p_joint 3.227000e-01

Outputting figure to mutsig2_images.part000000000093/KRT18.2_1321_10000_0.8264_0.2434_0.3227.png
                gene_name: KRT18
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 66 percent done.
KRT20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.013503e-02	ci left: 6.189430e-01	ci right 6.379821e-01	k: 6285	n:10000
Cons ci ratio: 4.178768e-02	ci left: 4.581808e-01	ci right 4.778379e-01	k: 4680	n:10000
KS ci ratio: 2.651309e-02	ci left: 6.769010e-01	ci right 6.951905e-01	k: 6861	n:10000
KRT20   10000 perm   2 sec   (6423 perm/sec)   p_kst 6.861000e-01   p_cons 4.680000e-01   p_joint 6.285000e-01

Outputting figure to mutsig2_images.part000000000093/KRT20.2_1307_10000_0.6861_0.468_0.6285.png
                gene_name: KRT20
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 68 percent done.
KRT27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.053201e-02	ci left: 3.660957e-01	ci right 3.851768e-01	k: 3756	n:10000
Cons ci ratio: 5.846905e-02	ci left: 3.009417e-01	ci right 3.191691e-01	k: 3100	n:10000
KS ci ratio: 8.988259e-02	ci left: 1.525700e-01	ci right 1.670288e-01	k: 1597	n:10000
KRT27   10000 perm   2 sec   (6433 perm/sec)   p_kst 1.597000e-01   p_cons 3.100000e-01   p_joint 3.756000e-01

Outputting figure to mutsig2_images.part000000000093/KRT27.2_1412_10000_0.1597_0.31_0.3756.png
                gene_name: KRT27
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 70 percent done.
KRT28
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.017911e-02	ci left: 9.319559e-01	ci right 9.415877e-01	k: 9369	n:10000
KS ci ratio: 1.772965e-02	ci left: 8.226953e-01	ci right 8.375119e-01	k: 8302	n:10000
KRT28   10000 perm   2 sec   (6637 perm/sec)   p_kst 8.302000e-01   p_cons 9.369000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000093/KRT28.2_1427_10000_0.8302_0.9369_1.png
                gene_name: KRT28
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
KRT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.445662e-02	ci left: 7.108847e-01	ci right 7.285871e-01	k: 7198	n:10000
Cons ci ratio: 3.262681e-02	ci left: 5.809875e-01	ci right 6.003596e-01	k: 5907	n:10000
KS ci ratio: 4.347894e-02	ci left: 4.385190e-01	ci right 4.581112e-01	k: 4483	n:10000
KRT3   10000 perm   2 sec   (6402 perm/sec)   p_kst 4.483000e-01   p_cons 5.907000e-01   p_joint 7.198000e-01

Outputting figure to mutsig2_images.part000000000093/KRT3.2_1923_10000_0.4483_0.5907_0.7198.png
                gene_name: KRT3
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 73 percent done.
KRT31
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.226699e-02	ci left: 3.504847e-01	ci right 3.693970e-01	k: 3599	n:10000
KS ci ratio: 4.901255e-03	ci left: 9.820981e-01	ci right 9.870138e-01	k: 9847	n:10000
KRT31   10000 perm   2 sec   (6473 perm/sec)   p_kst 9.847000e-01   p_cons 3.599000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000093/KRT31.2_1279_10000_0.9847_0.3599_1.png
                gene_name: KRT31
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
KRT32
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.722952e-02	ci left: 6.652165e-01	ci right 6.836817e-01	k: 6745	n:10000
Cons ci ratio: 3.427985e-02	ci left: 5.568193e-01	ci right 5.763419e-01	k: 5666	n:10000
KS ci ratio: 1.793042e-02	ci left: 8.194416e-01	ci right 8.343675e-01	k: 8270	n:10000
KRT32   10000 perm   1 sec   (6701 perm/sec)   p_kst 8.270000e-01   p_cons 5.666000e-01   p_joint 6.745000e-01

Outputting figure to mutsig2_images.part000000000093/KRT32.2_1375_10000_0.827_0.5666_0.6745.png
                gene_name: KRT32
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.68 

Current progress: 77 percent done.
KRT36
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.305878e-03	ci left: 9.793064e-01	ci right 9.846075e-01	k: 9821	n:10000
KS ci ratio: 1.043462e-02	ci left: 9.288527e-01	ci right 9.386928e-01	k: 9339	n:10000
KRT36   10000 perm   2 sec   (6438 perm/sec)   p_kst 9.339000e-01   p_cons 9.821000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000093/KRT36.2_1432_10000_0.9339_0.9821_1.png
                gene_name: KRT36
               theta_stop: 0.010 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
KRT37
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.918207e-01	ci left: 2.107242e-03	ci right 4.397341e-03	k: 31	n:10000
Cons ci ratio: 6.614075e-01	ci left: 2.355713e-03	ci right 4.747948e-03	k: 34	n:10000
KS ci ratio: 7.279234e-02	ci left: 2.165505e-01	ci right 2.330101e-01	k: 2247	n:10000
KRT37   10000 perm   2 sec   (6438 perm/sec)   p_kst 2.247000e-01   p_cons 3.400000e-03   p_joint 3.100000e-03

Joint ci ratio: 4.145833e-01	ci left: 3.530379e-03	ci right 5.418154e-03	k: 88	n:20000
Cons ci ratio: 3.693575e-01	ci left: 4.567803e-03	ci right 6.679840e-03	k: 111	n:20000
KS ci ratio: 5.109878e-02	ci left: 2.215068e-01	ci right 2.331726e-01	k: 4546	n:20000
KRT37   20000 perm   4 sec   (5688 perm/sec)   p_kst 2.273000e-01   p_cons 5.550000e-03   p_joint 4.400000e-03

Joint ci ratio: 2.865312e-01	ci left: 5.312224e-03	ci right 7.118745e-03	k: 185	n:30000
Cons ci ratio: 3.071465e-01	ci left: 4.571451e-03	ci right 6.259842e-03	k: 161	n:30000
KS ci ratio: 4.142937e-02	ci left: 2.250490e-01	ci right 2.346033e-01	k: 6894	n:30000
KRT37   30000 perm   6 sec   (5413 perm/sec)   p_kst 2.298000e-01   p_cons 5.366667e-03   p_joint 6.166667e-03

Joint ci ratio: 2.771859e-01	ci left: 4.285871e-03	ci right 5.687477e-03	k: 198	n:40000
Cons ci ratio: 2.678746e-01	ci left: 4.612062e-03	ci right 6.061178e-03	k: 212	n:40000
KS ci ratio: 3.595598e-02	ci left: 2.249392e-01	ci right 2.332002e-01	k: 9162	n:40000
KRT37   40000 perm   8 sec   (5213 perm/sec)   p_kst 2.290500e-01   p_cons 5.300000e-03   p_joint 4.950000e-03

Joint ci ratio: 2.230361e-01	ci left: 5.455194e-03	ci right 6.843083e-03	k: 306	n:50000
Cons ci ratio: 2.365983e-01	ci left: 4.814119e-03	ci right 6.124304e-03	k: 272	n:50000
KS ci ratio: 3.202902e-02	ci left: 2.268142e-01	ci right 2.342171e-01	k: 11525	n:50000
KRT37   50000 perm   10 sec   (5049 perm/sec)   p_kst 2.305000e-01   p_cons 5.440000e-03   p_joint 6.120000e-03

Joint ci ratio: 1.704952e-01	ci left: 7.988389e-03	ci right 9.493041e-03	k: 523	n:60000
Cons ci ratio: 2.142160e-01	ci left: 4.955465e-03	ci right 6.159787e-03	k: 332	n:60000
KS ci ratio: 2.924003e-02	ci left: 2.271183e-01	ci right 2.338744e-01	k: 13829	n:60000
KRT37   60000 perm   12 sec   (4948 perm/sec)   p_kst 2.304833e-01   p_cons 5.533333e-03   p_joint 8.716667e-03

Joint ci ratio: 1.923194e-01	ci left: 5.332479e-03	ci right 6.480488e-03	k: 412	n:70000
Cons ci ratio: 2.016135e-01	ci left: 4.829834e-03	ci right 5.926067e-03	k: 375	n:70000
KS ci ratio: 2.707538e-02	ci left: 2.273131e-01	ci right 2.335664e-01	k: 16130	n:70000
KRT37   70000 perm   14 sec   (4840 perm/sec)   p_kst 2.304286e-01   p_cons 5.357143e-03   p_joint 5.885714e-03

Joint ci ratio: 1.184732e-01	ci left: 1.269961e-02	ci right 1.431095e-02	k: 1079	n:80000
Cons ci ratio: 1.855169e-01	ci left: 5.035022e-03	ci right 6.076329e-03	k: 443	n:80000
KS ci ratio: 2.539512e-02	ci left: 2.265648e-01	ci right 2.324049e-01	k: 18358	n:80000
KRT37   80000 perm   17 sec   (4744 perm/sec)   p_kst 2.294750e-01   p_cons 5.537500e-03   p_joint 1.348750e-02

Joint ci ratio: 1.120252e-01	ci left: 1.266977e-02	ci right 1.418405e-02	k: 1207	n:90000
Cons ci ratio: 1.741201e-01	ci left: 5.112275e-03	ci right 6.097780e-03	k: 503	n:90000
KS ci ratio: 2.398411e-02	ci left: 2.261253e-01	ci right 2.316256e-01	k: 20598	n:90000
KRT37   90000 perm   19 sec   (4659 perm/sec)   p_kst 2.288667e-01   p_cons 5.588889e-03   p_joint 1.341111e-02

Joint ci ratio: 9.947968e-02	ci left: 1.452882e-02	ci right 1.605949e-02	k: 1528	n:100000
Cons ci ratio: 1.659315e-01	ci left: 5.089348e-03	ci right 6.019684e-03	k: 554	n:100000
KS ci ratio: 2.277577e-02	ci left: 2.259205e-01	ci right 2.311352e-01	k: 22852	n:100000
KRT37   100000 perm   22 sec   (4586 perm/sec)   p_kst 2.285200e-01   p_cons 5.540000e-03   p_joint 1.528000e-02

Joint ci ratio: 9.461908e-02	ci left: 1.463617e-02	ci right 1.609863e-02	k: 1689	n:110000
Cons ci ratio: 1.569860e-01	ci left: 5.193749e-03	ci right 6.087165e-03	k: 619	n:110000
KS ci ratio: 2.172666e-02	ci left: 2.258675e-01	ci right 2.308378e-01	k: 25118	n:110000
KRT37   110000 perm   24 sec   (4512 perm/sec)   p_kst 2.283455e-01   p_cons 5.627273e-03   p_joint 1.535455e-02

Joint ci ratio: 9.016067e-02	ci left: 1.480863e-02	ci right 1.621492e-02	k: 1860	n:120000
Cons ci ratio: 1.503433e-01	ci left: 5.209667e-03	ci right 6.064491e-03	k: 675	n:120000
KS ci ratio: 2.078673e-02	ci left: 2.262265e-01	ci right 2.309866e-01	k: 27432	n:120000
KRT37   120000 perm   27 sec   (4447 perm/sec)   p_kst 2.286000e-01   p_cons 5.625000e-03   p_joint 1.550000e-02

Joint ci ratio: 8.645135e-02	ci left: 1.489570e-02	ci right 1.624911e-02	k: 2023	n:130000
Cons ci ratio: 1.436908e-01	ci left: 5.283142e-03	ci right 6.108373e-03	k: 739	n:130000
KS ci ratio: 1.995953e-02	ci left: 2.265265e-01	ci right 2.311010e-01	k: 29745	n:130000
KRT37   130000 perm   30 sec   (4382 perm/sec)   p_kst 2.288077e-01   p_cons 5.684615e-03   p_joint 1.556154e-02

Joint ci ratio: 8.289600e-02	ci left: 1.506929e-02	ci right 1.637945e-02	k: 2200	n:140000
Cons ci ratio: 1.378497e-01	ci left: 5.346833e-03	ci right 6.145276e-03	k: 803	n:140000
KS ci ratio: 1.923939e-02	ci left: 2.265020e-01	ci right 2.309092e-01	k: 32018	n:140000
KRT37   140000 perm   32 sec   (4318 perm/sec)   p_kst 2.287000e-01   p_cons 5.735714e-03   p_joint 1.571429e-02

Joint ci ratio: 7.890721e-02	ci left: 1.554755e-02	ci right 1.683125e-02	k: 2427	n:150000
Cons ci ratio: 1.338356e-01	ci left: 5.305935e-03	ci right 6.073362e-03	k: 852	n:150000
KS ci ratio: 1.858634e-02	ci left: 2.265898e-01	ci right 2.308474e-01	k: 34307	n:150000
KRT37   150000 perm   35 sec   (4254 perm/sec)   p_kst 2.287133e-01   p_cons 5.680000e-03   p_joint 1.618000e-02

Joint ci ratio: 7.548638e-02	ci left: 1.594893e-02	ci right 1.720618e-02	k: 2651	n:160000
Cons ci ratio: 1.290779e-01	ci left: 5.361172e-03	ci right 6.106910e-03	k: 916	n:160000
KS ci ratio: 1.797583e-02	ci left: 2.270551e-01	ci right 2.311798e-01	k: 36658	n:160000
KRT37   160000 perm   38 sec   (4191 perm/sec)   p_kst 2.291125e-01   p_cons 5.725000e-03   p_joint 1.656875e-02

Joint ci ratio: 7.537957e-02	ci left: 1.506821e-02	ci right 1.625427e-02	k: 2661	n:170000
Cons ci ratio: 1.256340e-01	ci left: 5.336247e-03	ci right 6.057238e-03	k: 967	n:170000
KS ci ratio: 1.741916e-02	ci left: 2.275203e-01	ci right 2.315242e-01	k: 39018	n:170000
KRT37   170000 perm   41 sec   (4131 perm/sec)   p_kst 2.295176e-01   p_cons 5.688235e-03   p_joint 1.565294e-02

Joint ci ratio: 7.551372e-02	ci left: 1.419269e-02	ci right 1.531191e-02	k: 2654	n:180000
Cons ci ratio: 1.224517e-01	ci left: 5.314327e-03	ci right 6.012850e-03	k: 1018	n:180000
KS ci ratio: 1.692074e-02	ci left: 2.277362e-01	ci right 2.316281e-01	k: 41342	n:180000
KRT37   180000 perm   44 sec   (4072 perm/sec)   p_kst 2.296778e-01   p_cons 5.655556e-03   p_joint 1.474444e-02

Joint ci ratio: 7.114635e-02	ci left: 1.516648e-02	ci right 1.629047e-02	k: 2987	n:190000
Cons ci ratio: 1.190529e-01	ci left: 5.335776e-03	ci right 6.016281e-03	k: 1077	n:190000
KS ci ratio: 1.646792e-02	ci left: 2.278206e-01	ci right 2.316087e-01	k: 43645	n:190000
KRT37   190000 perm   47 sec   (4015 perm/sec)   p_kst 2.297105e-01   p_cons 5.668421e-03   p_joint 1.572105e-02

Joint ci ratio: 6.880527e-02	ci left: 1.542021e-02	ci right 1.652389e-02	k: 3193	n:200000
Cons ci ratio: 1.158710e-01	ci left: 5.360177e-03	ci right 6.024273e-03	k: 1137	n:200000
KS ci ratio: 1.604758e-02	ci left: 2.279427e-01	ci right 2.316351e-01	k: 45957	n:200000
KRT37   200000 perm   51 sec   (3958 perm/sec)   p_kst 2.297850e-01   p_cons 5.685000e-03   p_joint 1.596500e-02

Joint ci ratio: 6.731761e-02	ci left: 1.535526e-02	ci right 1.642960e-02	k: 3336	n:210000
Cons ci ratio: 1.135044e-01	ci left: 5.326940e-03	ci right 5.972535e-03	k: 1185	n:210000
KS ci ratio: 1.566524e-02	ci left: 2.278880e-01	ci right 2.314909e-01	k: 48234	n:210000
KRT37   210000 perm   54 sec   (3904 perm/sec)   p_kst 2.296857e-01   p_cons 5.642857e-03   p_joint 1.588571e-02

Joint ci ratio: 6.557862e-02	ci left: 1.545743e-02	ci right 1.650992e-02	k: 3515	n:220000
Cons ci ratio: 1.103812e-01	ci left: 5.385252e-03	ci right 6.018787e-03	k: 1253	n:220000
KS ci ratio: 1.529936e-02	ci left: 2.280615e-01	ci right 2.315820e-01	k: 50560	n:220000
KRT37   220000 perm   57 sec   (3850 perm/sec)   p_kst 2.298182e-01   p_cons 5.695455e-03   p_joint 1.597727e-02

Joint ci ratio: 6.420658e-02	ci left: 1.543551e-02	ci right 1.646370e-02	k: 3667	n:230000
Cons ci ratio: 1.079964e-01	ci left: 5.387940e-03	ci right 6.007226e-03	k: 1309	n:230000
KS ci ratio: 1.495741e-02	ci left: 2.282337e-01	ci right 2.316775e-01	k: 52889	n:230000
KRT37   230000 perm   61 sec   (3799 perm/sec)   p_kst 2.299522e-01   p_cons 5.691304e-03   p_joint 1.594348e-02

Joint ci ratio: 6.276710e-02	ci left: 1.548947e-02	ci right 1.649727e-02	k: 3837	n:240000
Cons ci ratio: 1.056820e-01	ci left: 5.398653e-03	ci right 6.005045e-03	k: 1367	n:240000
KS ci ratio: 1.466191e-02	ci left: 2.278022e-01	ci right 2.311710e-01	k: 55076	n:240000
KRT37   240000 perm   64 sec   (3749 perm/sec)   p_kst 2.294833e-01   p_cons 5.695833e-03   p_joint 1.598750e-02

Joint ci ratio: 6.198858e-02	ci left: 1.525571e-02	ci right 1.623556e-02	k: 3935	n:250000
Cons ci ratio: 1.032194e-01	ci left: 5.439816e-03	ci right 6.035731e-03	k: 1433	n:250000
KS ci ratio: 1.437769e-02	ci left: 2.275416e-01	ci right 2.308407e-01	k: 57297	n:250000
KRT37   250000 perm   68 sec   (3701 perm/sec)   p_kst 2.291880e-01   p_cons 5.732000e-03   p_joint 1.574000e-02

Joint ci ratio: 5.981557e-02	ci left: 1.576369e-02	ci right 1.673944e-02	k: 4224	n:260000
Cons ci ratio: 1.017433e-01	ci left: 5.387983e-03	ci right 5.969274e-03	k: 1475	n:260000
KS ci ratio: 1.409234e-02	ci left: 2.277274e-01	ci right 2.309632e-01	k: 59629	n:260000
KRT37   260000 perm   71 sec   (3652 perm/sec)   p_kst 2.293423e-01   p_cons 5.673077e-03   p_joint 1.624615e-02

Joint ci ratio: 5.921749e-02	ci left: 1.549721e-02	ci right 1.644655e-02	k: 4311	n:270000
Cons ci ratio: 9.996508e-02	ci left: 5.379772e-03	ci right 5.949437e-03	k: 1528	n:270000
KS ci ratio: 1.384159e-02	ci left: 2.274346e-01	ci right 2.306083e-01	k: 61835	n:270000
KRT37   270000 perm   75 sec   (3605 perm/sec)   p_kst 2.290185e-01   p_cons 5.659259e-03   p_joint 1.596667e-02

Outputting figure to mutsig2_images.part000000000093/KRT37.2_1378_270000_0.22902_0.0056593_0.015967.png
                gene_name: KRT37
               theta_stop: 0.100 
                    nperm: 270000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.0057 
      ci_cons_bounds_left: 0.0054 
     ci_cons_bounds_right: 0.0059 
                  p_joint: 0.016 
     ci_joint_bounds_left: 0.015 
    ci_joint_bounds_right: 0.016 

Current progress: 80 percent done.
KRT4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.479197e-02	ci left: 8.687674e-01	ci right 8.818131e-01	k: 8754	n:10000
Cons ci ratio: 6.314093e-02	ci left: 2.693338e-01	ci right 2.869956e-01	k: 2781	n:10000
KS ci ratio: 1.524259e-02	ci left: 8.619232e-01	ci right 8.752613e-01	k: 8687	n:10000
KRT4   10000 perm   2 sec   (6298 perm/sec)   p_kst 8.687000e-01   p_cons 2.781000e-01   p_joint 8.754000e-01

Outputting figure to mutsig2_images.part000000000093/KRT4.2_1821_10000_0.8687_0.2781_0.8754.png
                gene_name: KRT4
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 82 percent done.
KRT40
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.905301e-03	ci left: 9.465858e-01	ci right 9.551491e-01	k: 9510	n:10000
Cons ci ratio: 3.282282e-02	ci left: 5.780780e-01	ci right 5.974708e-01	k: 5878	n:10000
KS ci ratio: 1.724346e-02	ci left: 8.305285e-01	ci right 8.450741e-01	k: 8379	n:10000
KRT40   10000 perm   1 sec   (6819 perm/sec)   p_kst 8.379000e-01   p_cons 5.878000e-01   p_joint 9.510000e-01

Outputting figure to mutsig2_images.part000000000093/KRT40.2_1324_10000_0.8379_0.5878_0.951.png
                gene_name: KRT40
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 84 percent done.
KRT6A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.565379e-02	ci left: 2.540943e-01	ci right 2.714441e-01	k: 2627	n:10000
Cons ci ratio: 6.933755e-02	ci left: 2.337305e-01	ci right 2.506200e-01	k: 2421	n:10000
KS ci ratio: 1.091164e-01	ci left: 1.080293e-01	ci right 1.205964e-01	k: 1142	n:10000
KRT6A   10000 perm   2 sec   (6574 perm/sec)   p_kst 1.142000e-01   p_cons 2.421000e-01   p_joint 2.627000e-01

Joint ci ratio: 4.743406e-02	ci left: 2.484743e-01	ci right 2.605971e-01	k: 5090	n:20000
Cons ci ratio: 4.823469e-02	ci left: 2.422253e-01	ci right 2.542480e-01	k: 4964	n:20000
KS ci ratio: 7.525703e-02	ci left: 1.149366e-01	ci right 1.239743e-01	k: 2388	n:20000
KRT6A   20000 perm   3 sec   (5795 perm/sec)   p_kst 1.194000e-01   p_cons 2.482000e-01   p_joint 2.545000e-01

Outputting figure to mutsig2_images.part000000000093/KRT6A.2_1731_20000_0.1194_0.2482_0.2545.png
                gene_name: KRT6A
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 86 percent done.
KRT74
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.453735e-02	ci left: 2.607228e-01	ci right 2.782117e-01	k: 2694	n:10000
Cons ci ratio: 7.411193e-02	ci left: 2.104338e-01	ci right 2.267305e-01	k: 2185	n:10000
KS ci ratio: 1.043462e-02	ci left: 9.288527e-01	ci right 9.386928e-01	k: 9339	n:10000
KRT74   10000 perm   2 sec   (6427 perm/sec)   p_kst 9.339000e-01   p_cons 2.185000e-01   p_joint 2.694000e-01

Outputting figure to mutsig2_images.part000000000093/KRT74.2_1626_10000_0.9339_0.2185_0.2694.png
                gene_name: KRT74
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 88 percent done.
KRT82
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.796719e-02	ci left: 5.060517e-01	ci right 5.257390e-01	k: 5159	n:10000
KS ci ratio: 2.275845e-02	ci left: 7.392680e-01	ci right 7.563874e-01	k: 7479	n:10000
KRT82   10000 perm   2 sec   (6438 perm/sec)   p_kst 7.479000e-01   p_cons 5.159000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000093/KRT82.2_1578_10000_0.7479_0.5159_1.png
                gene_name: KRT82
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
KRT83
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.245979e-02	ci left: 2.181294e-01	ci right 2.346303e-01	k: 2263	n:10000
Cons ci ratio: 6.705486e-02	ci left: 2.460841e-01	ci right 2.632590e-01	k: 2546	n:10000
KS ci ratio: 8.824489e-02	ci left: 1.574787e-01	ci right 1.721171e-01	k: 1647	n:10000
KRT83   10000 perm   2 sec   (6476 perm/sec)   p_kst 1.647000e-01   p_cons 2.546000e-01   p_joint 2.263000e-01

Outputting figure to mutsig2_images.part000000000093/KRT83.2_1518_10000_0.1647_0.2546_0.2263.png
                gene_name: KRT83
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 91 percent done.
KRT85
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.696871e-02	ci left: 5.193596e-01	ci right 5.390234e-01	k: 5292	n:10000
Cons ci ratio: 1.284443e-02	ci left: 8.971340e-01	ci right 9.088300e-01	k: 9031	n:10000
KS ci ratio: 8.358022e-02	ci left: 1.727107e-01	ci right 1.878760e-01	k: 1802	n:10000
KRT85   10000 perm   2 sec   (6432 perm/sec)   p_kst 1.802000e-01   p_cons 9.031000e-01   p_joint 5.292000e-01

Outputting figure to mutsig2_images.part000000000093/KRT85.2_1560_10000_0.1802_0.9031_0.5292.png
                gene_name: KRT85
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 93 percent done.
KRT9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.869635e-02	ci left: 1.561040e-01	ci right 1.706926e-01	k: 1633	n:10000
Cons ci ratio: 1.065542e-01	ci left: 1.128131e-01	ci right 1.256096e-01	k: 1191	n:10000
KS ci ratio: 4.437769e-02	ci left: 4.284445e-01	ci right 4.479915e-01	k: 4382	n:10000
KRT9   10000 perm   2 sec   (6302 perm/sec)   p_kst 4.382000e-01   p_cons 1.191000e-01   p_joint 1.633000e-01

Joint ci ratio: 7.610977e-02	ci left: 1.126255e-01	ci right 1.215862e-01	k: 2341	n:20000
Cons ci ratio: 7.957616e-02	ci left: 1.038780e-01	ci right 1.125363e-01	k: 2163	n:20000
KS ci ratio: 3.174521e-02	ci left: 4.256690e-01	ci right 4.394506e-01	k: 8651	n:20000
KRT9   20000 perm   4 sec   (5549 perm/sec)   p_kst 4.325500e-01   p_cons 1.081500e-01   p_joint 1.170500e-01

Outputting figure to mutsig2_images.part000000000093/KRT9.2_1900_20000_0.43255_0.10815_0.11705.png
                gene_name: KRT9
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 95 percent done.
KRTAP1-3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.222147e-02	ci left: 7.482674e-01	ci right 7.651828e-01	k: 7568	n:10000
Cons ci ratio: 4.303352e-02	ci left: 4.436076e-01	ci right 4.632196e-01	k: 4534	n:10000
KS ci ratio: 2.805179e-02	ci left: 6.519282e-01	ci right 6.705778e-01	k: 6613	n:10000
KRTAP1-3   10000 perm   1 sec   (7050 perm/sec)   p_kst 6.613000e-01   p_cons 4.534000e-01   p_joint 7.568000e-01

Outputting figure to mutsig2_images.part000000000093/KRTAP1-3.2_508_10000_0.6613_0.4534_0.7568.png
                gene_name: KRTAP1-3
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 96 percent done.
KRTAP10-10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.266728e-03	ci left: 9.533608e-01	ci right 9.613700e-01	k: 9575	n:10000
KS ci ratio: 2.768949e-02	ci left: 6.577660e-01	ci right 6.763366e-01	k: 6671	n:10000
KRTAP10-10   10000 perm   1 sec   (6885 perm/sec)   p_kst 6.671000e-01   p_cons 9.575000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000093/KRTAP10-10.2_760_10000_0.6671_0.9575_1.png
                gene_name: KRTAP10-10
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
KRTAP10-3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.770970e-03	ci left: 9.480432e-01	ci right 9.564908e-01	k: 9524	n:10000
Cons ci ratio: 3.741616e-02	ci left: 5.133552e-01	ci right 5.330313e-01	k: 5232	n:10000
KS ci ratio: 1.640474e-02	ci left: 8.438687e-01	ci right 8.579262e-01	k: 8510	n:10000
KRTAP10-3   10000 perm   1 sec   (6974 perm/sec)   p_kst 8.510000e-01   p_cons 5.232000e-01   p_joint 9.524000e-01

Outputting figure to mutsig2_images.part000000000093/KRTAP10-3.2_670_10000_0.851_0.5232_0.9524.png
                gene_name: KRTAP10-3
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000093
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 93 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1710>
Subject: Job 8004213: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1710>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000094> was used as the working directory.
Started at Sun Nov 11 15:07:30 2012
Results reported at Sun Nov 11 15:13:54 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000094.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000094.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 94  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000094.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    421.15 sec.
    Max Memory :      4738 MB
    Max Swap   :      7058 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
94
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 94
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 94: processing genes 8415 - 8504
Calculating significance of each gene.
Using projection method.
8415	KRTAP10-8	5.522797e-02
8416	KRTAP10-9	1
8417	KRTAP11-1	2.339654e-02
8418	KRTAP12-1	1
8419	KRTAP12-2	3.567006e-01
8420	KRTAP12-3	1.203326e-01
8421	KRTAP12-4	6.074527e-02
8422	KRTAP13-1	1
8423	KRTAP13-2	1
8424	KRTAP13-3	1
8425	KRTAP13-4	1
8426	KRTAP15-1	1
8427	KRTAP17-1	1
8428	KRTAP19-1	1
8429	KRTAP19-2	1
8430	KRTAP19-3	7.241028e-03
8431	KRTAP19-4	1
8432	KRTAP19-5	1.322119e-02
8433	KRTAP19-6	1
8434	KRTAP19-7	1
8435	KRTAP19-8	1
8436	KRTAP20-1	1
8437	KRTAP20-2	2.660118e-01
8438	KRTAP21-1	7.050641e-03
8439	KRTAP21-2	9.901778e-03
8440	KRTAP22-1	1.158270e-01
8441	KRTAP23-1	1
8442	KRTAP24-1	1.721474e-01
8443	KRTAP26-1	4.293667e-01
8444	KRTAP27-1	1
8445	KRTAP3-1	1.525313e-01
8446	KRTAP3-2	1
8447	KRTAP3-3	3.498284e-01
8448	KRTAP4-1	1
8449	KRTAP4-11	1
8450	KRTAP4-12	1
8451	KRTAP4-2	6.741045e-02
8452	KRTAP4-3	1
8453	KRTAP4-4	3.658706e-01
8454	KRTAP4-5	8.295177e-02
8455	KRTAP4-7	1
8456	KRTAP4-8	1
8457	KRTAP4-9	1
8458	KRTAP5-1	7.544290e-01
8459	KRTAP5-10	1.152864e-01
8460	KRTAP5-11	1.457234e-01
8461	KRTAP5-2	1
8462	KRTAP5-3	2.159015e-01
8463	KRTAP5-4	1
8464	KRTAP5-5	5.113875e-07
8465	KRTAP5-6	3.367275e-02
8466	KRTAP5-7	1
8467	KRTAP5-8	4.590224e-01
8468	KRTAP5-9	5.132403e-01
8469	KRTAP6-1	1
8470	KRTAP6-2	1.417082e-01
8471	KRTAP6-3	3.595912e-01
8472	KRTAP8-1	1
8473	KRTAP9-2	1.955318e-01
8474	KRTAP9-3	1
8475	KRTAP9-4	7.566368e-03
8476	KRTAP9-8	9.540672e-03
8477	KRTAP9-9	1
8478	KRTCAP2	1
8479	KRTCAP3	1
8480	KRTDAP	3.281617e-01
8481	KSR1	1
8482	KSR2	5.401243e-01
8483	KTELC1	1.078994e-01
8484	KTI12	2.652909e-01
8485	KTN1	2.652525e-01
8486	KY	6.423519e-01
8487	KYNU	3.184903e-01
8488	L1CAM	1
8489	L1TD1	5.694238e-01
8490	L2HGDH	1
8491	L3MBTL	7.045727e-01
8492	L3MBTL2	7.544246e-01
8493	L3MBTL3	6.172552e-01
8494	L3MBTL4	1.936197e-01
8495	LACE1	7.551891e-01
8496	LACRT	1
8497	LACTB	8.234964e-01
8498	LACTB2	1.640781e-01
8499	LAD1	7.389641e-01
8500	LAG3	5.154784e-01
8501	LAGE3	2.348084e-01
8502	LAIR1	2.067028e-01
8503	LAIR2	2.355018e-01
8504	LALBA	1
Done

Running MutSig 2:
Scatter job 94: processing genes 8415 - 8504
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
KRTAP5-5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.332907e-01	ci left: 7.427098e-02	ci right 8.497542e-02	k: 795	n:10000
Cons ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
KS ci ratio: 2.554752e-01	ci left: 2.005779e-02	ci right 2.602453e-02	k: 229	n:10000
KRTAP5-5   10000 perm   2 sec   (5777 perm/sec)   p_kst 2.290000e-02   p_cons 1   p_joint 7.950000e-02

Joint ci ratio: 1.314830e-01	ci left: 3.974595e-02	ci right 4.538802e-02	k: 850	n:20000
Cons ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
KS ci ratio: 1.763823e-01	ci left: 2.197114e-02	ci right 2.626874e-02	k: 481	n:20000
KRTAP5-5   20000 perm   5 sec   (3646 perm/sec)   p_kst 2.405000e-02   p_cons 1   p_joint 4.250000e-02

Joint ci ratio: 7.420644e-02	ci left: 8.193338e-02	ci right 8.828057e-02	k: 2552	n:30000
Cons ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
KS ci ratio: 1.461008e-01	ci left: 2.171899e-02	ci right 2.517415e-02	k: 702	n:30000
KRTAP5-5   30000 perm   8 sec   (3931 perm/sec)   p_kst 2.340000e-02   p_cons 1   p_joint 8.506667e-02

Joint ci ratio: 6.326452e-02	ci left: 8.479770e-02	ci right 9.036235e-02	k: 3502	n:40000
Cons ci ratio: 9.799510e-05	ci left: 9.999078e-01	ci right 1	k: 40000	n:40000
KS ci ratio: 1.244582e-01	ci left: 2.269194e-02	ci right 2.572767e-02	k: 967	n:40000
KRTAP5-5   40000 perm   10 sec   (4093 perm/sec)   p_kst 2.417500e-02   p_cons 1   p_joint 8.755000e-02

Joint ci ratio: 6.488045e-02	ci left: 6.582821e-02	ci right 7.026210e-02	k: 3401	n:50000
Cons ci ratio: 7.839686e-05	ci left: 9.999262e-01	ci right 1	k: 50000	n:50000
KS ci ratio: 1.102041e-01	ci left: 2.331828e-02	ci right 2.605728e-02	k: 1233	n:50000
KRTAP5-5   50000 perm   12 sec   (4171 perm/sec)   p_kst 2.466000e-02   p_cons 1   p_joint 6.802000e-02

Joint ci ratio: 6.229085e-02	ci left: 5.998473e-02	ci right 6.385777e-02	k: 3714	n:60000
Cons ci ratio: 6.533116e-05	ci left: 9.999385e-01	ci right 1	k: 60000	n:60000
KS ci ratio: 1.034227e-01	ci left: 2.217268e-02	ci right 2.460706e-02	k: 1402	n:60000
KRTAP5-5   60000 perm   14 sec   (4190 perm/sec)   p_kst 2.336667e-02   p_cons 1   p_joint 6.190000e-02

Joint ci ratio: 5.421858e-02	ci left: 6.759865e-02	ci right 7.137998e-02	k: 4863	n:70000
Cons ci ratio: 5.599840e-05	ci left: 9.999473e-01	ci right 1	k: 70000	n:70000
KS ci ratio: 9.665670e-02	ci left: 2.184639e-02	ci right 2.407911e-02	k: 1606	n:70000
KRTAP5-5   70000 perm   17 sec   (4182 perm/sec)   p_kst 2.294286e-02   p_cons 1   p_joint 6.947143e-02

Outputting figure to mutsig2_images.part000000000094/KRTAP5-5.9_718_70000_0.022943_1_0.069471.png
                gene_name: KRTAP5-5
               theta_stop: 0.097 
                    nperm: 70000 
                     p_ks: 0.023 
        ci_ks_bounds_left: 0.022 
       ci_ks_bounds_right: 0.024 
                   p_cons: 1 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1 
                  p_joint: 0.069 
     ci_joint_bounds_left: 0.068 
    ci_joint_bounds_right: 0.071 

Current progress: 3 percent done.
KTN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.113034e-02	ci left: 6.035728e-01	ci right 6.227612e-01	k: 6132	n:10000
Cons ci ratio: 6.687871e-02	ci left: 2.470728e-01	ci right 2.642697e-01	k: 2556	n:10000
KS ci ratio: 2.366999e-02	ci left: 7.240102e-01	ci right 7.414540e-01	k: 7328	n:10000
KTN1   10000 perm   2 sec   (4553 perm/sec)   p_kst 7.328000e-01   p_cons 2.556000e-01   p_joint 6.132000e-01

Outputting figure to mutsig2_images.part000000000094/KTN1.8_4255_10000_0.7328_0.2556_0.6132.png
                gene_name: KTN1
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 5 percent done.
L3MBTL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.247453e-02	ci left: 9.022685e-01	ci right 9.136926e-01	k: 9081	n:10000
KS ci ratio: 2.053356e-02	ci left: 7.765116e-01	ci right 7.927222e-01	k: 7847	n:10000
L3MBTL3   10000 perm   2 sec   (4981 perm/sec)   p_kst 7.847000e-01   p_cons 9.081000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000094/L3MBTL3.8_2427_10000_0.7847_0.9081_1.png
                gene_name: L3MBTL3
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 8 percent done.
L3MBTL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.494741e-02	ci left: 8.664173e-01	ci right 8.795646e-01	k: 8731	n:10000
Cons ci ratio: 2.731636e-02	ci left: 6.638068e-01	ci right 6.822923e-01	k: 6731	n:10000
KS ci ratio: 2.101274e-02	ci left: 7.685089e-01	ci right 7.849296e-01	k: 7768	n:10000
L3MBTL4   10000 perm   2 sec   (5264 perm/sec)   p_kst 7.768000e-01   p_cons 6.731000e-01   p_joint 8.731000e-01

Outputting figure to mutsig2_images.part000000000094/L3MBTL4.5_1944_10000_0.7768_0.6731_0.8731.png
                gene_name: L3MBTL4
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 11 percent done.
KRTAP10-8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.707466e-02	ci left: 6.677342e-01	ci right 6.861626e-01	k: 6770	n:10000
Cons ci ratio: 2.677805e-02	ci left: 6.725690e-01	ci right 6.909251e-01	k: 6818	n:10000
KS ci ratio: 5.581766e-02	ci left: 3.209831e-01	ci right 3.395159e-01	k: 3302	n:10000
KRTAP10-8   10000 perm   2 sec   (6311 perm/sec)   p_kst 3.302000e-01   p_cons 6.818000e-01   p_joint 6.770000e-01

Outputting figure to mutsig2_images.part000000000094/KRTAP10-8.4_784_10000_0.3302_0.6818_0.677.png
                gene_name: KRTAP10-8
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 13 percent done.
KRTAP9-4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.312415e-01	ci left: 7.650089e-02	ci right 8.734413e-02	k: 818	n:10000
Cons ci ratio: 9.608188e-03	ci left: 9.386903e-01	ci right 9.478494e-01	k: 9434	n:10000
KS ci ratio: 2.318040e-01	ci left: 2.457161e-02	ci right 3.110733e-02	k: 277	n:10000
KRTAP9-4   10000 perm   2 sec   (6643 perm/sec)   p_kst 2.770000e-02   p_cons 9.434000e-01   p_joint 8.180000e-02

Joint ci ratio: 7.706328e-02	ci left: 1.101183e-01	ci right 1.189941e-01	k: 2290	n:20000
Cons ci ratio: 6.807580e-03	ci left: 9.398509e-01	ci right 9.463195e-01	k: 18863	n:20000
KS ci ratio: 1.667107e-01	ci left: 2.465375e-02	ci right 2.918520e-02	k: 537	n:20000
KRTAP9-4   20000 perm   3 sec   (5960 perm/sec)   p_kst 2.685000e-02   p_cons 9.431500e-01   p_joint 1.145000e-01

Joint ci ratio: 6.385460e-02	ci left: 1.080251e-01	ci right 1.151836e-01	k: 3347	n:30000
Cons ci ratio: 5.562055e-03	ci left: 9.403847e-01	ci right 9.456624e-01	k: 28292	n:30000
KS ci ratio: 1.363805e-01	ci left: 2.496955e-02	ci right 2.865619e-02	k: 803	n:30000
KRTAP9-4   30000 perm   5 sec   (5667 perm/sec)   p_kst 2.676667e-02   p_cons 9.430667e-01   p_joint 1.115667e-01

Joint ci ratio: 6.527615e-02	ci left: 7.999409e-02	ci right 8.541667e-02	k: 3307	n:40000
Cons ci ratio: 4.778006e-03	ci left: 9.416255e-01	ci right 9.461598e-01	k: 37757	n:40000
KS ci ratio: 1.171031e-01	ci left: 2.565209e-02	ci right 2.886704e-02	k: 1089	n:40000
KRTAP9-4   40000 perm   7 sec   (5499 perm/sec)   p_kst 2.722500e-02   p_cons 9.439250e-01   p_joint 8.267500e-02

Joint ci ratio: 5.805643e-02	ci left: 8.112892e-02	ci right 8.599956e-02	k: 4177	n:50000
Cons ci ratio: 4.268789e-03	ci left: 9.419894e-01	ci right 9.460388e-01	k: 47202	n:50000
KS ci ratio: 1.050779e-01	ci left: 2.565528e-02	ci right 2.851998e-02	k: 1353	n:50000
KRTAP9-4   50000 perm   9 sec   (5361 perm/sec)   p_kst 2.706000e-02   p_cons 9.440400e-01   p_joint 8.354000e-02

Joint ci ratio: 5.515496e-02	ci left: 7.550431e-02	ci right 7.980332e-02	k: 4658	n:60000
Cons ci ratio: 3.902537e-03	ci left: 9.420119e-01	ci right 9.457117e-01	k: 56633	n:60000
KS ci ratio: 9.643633e-02	ci left: 2.550609e-02	ci right 2.810662e-02	k: 1607	n:60000
KRTAP9-4   60000 perm   11 sec   (5239 perm/sec)   p_kst 2.678333e-02   p_cons 9.438833e-01   p_joint 7.763333e-02

Outputting figure to mutsig2_images.part000000000094/KRTAP9-4.4_469_60000_0.026783_0.94388_0.077633.png
                gene_name: KRTAP9-4
               theta_stop: 0.096 
                    nperm: 60000 
                     p_ks: 0.027 
        ci_ks_bounds_left: 0.026 
       ci_ks_bounds_right: 0.028 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.078 
     ci_joint_bounds_left: 0.076 
    ci_joint_bounds_right: 0.080 

Current progress: 16 percent done.
KRTAP9-8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.785981e-02	ci left: 3.054047e-01	ci right 3.237035e-01	k: 3145	n:10000
Cons ci ratio: 9.487959e-02	ci left: 1.388391e-01	ci right 1.527680e-01	k: 1457	n:10000
KS ci ratio: 3.820347e-02	ci left: 5.029509e-01	ci right 5.226417e-01	k: 5128	n:10000
KRTAP9-8   10000 perm   1 sec   (7385 perm/sec)   p_kst 5.128000e-01   p_cons 1.457000e-01   p_joint 3.145000e-01

Outputting figure to mutsig2_images.part000000000094/KRTAP9-8.4_484_10000_0.5128_0.1457_0.3145.png
                gene_name: KRTAP9-8
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 18 percent done.
KSR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.554104e-02	ci left: 4.157825e-01	ci right 4.352610e-01	k: 4255	n:10000
Cons ci ratio: 2.834030e-02	ci left: 6.472993e-01	ci right 6.660094e-01	k: 6567	n:10000
KS ci ratio: 6.383989e-02	ci left: 2.649783e-01	ci right 2.825537e-01	k: 2737	n:10000
KSR2   10000 perm   2 sec   (5459 perm/sec)   p_kst 2.737000e-01   p_cons 6.567000e-01   p_joint 4.255000e-01

Outputting figure to mutsig2_images.part000000000094/KSR2.4_2846_10000_0.2737_0.6567_0.4255.png
                gene_name: KSR2
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 21 percent done.
KTELC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.509683e-02	ci left: 4.205673e-01	ci right 4.400733e-01	k: 4303	n:10000
Cons ci ratio: 6.445550e-02	ci left: 2.612176e-01	ci right 2.787166e-01	k: 2699	n:10000
KS ci ratio: 4.392105e-02	ci left: 4.335311e-01	ci right 4.531019e-01	k: 4433	n:10000
KTELC1   10000 perm   2 sec   (6406 perm/sec)   p_kst 4.433000e-01   p_cons 2.699000e-01   p_joint 4.303000e-01

Outputting figure to mutsig2_images.part000000000094/KTELC1.4_1223_10000_0.4433_0.2699_0.4303.png
                gene_name: KTELC1
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 24 percent done.
KRTAP11-1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.393915e-02	ci left: 5.617312e-01	ci right 5.812271e-01	k: 5715	n:10000
Cons ci ratio: 6.498281e-02	ci left: 2.580513e-01	ci right 2.754848e-01	k: 2667	n:10000
KS ci ratio: 3.838735e-02	ci left: 5.005505e-01	ci right 5.202435e-01	k: 5104	n:10000
KRTAP11-1   10000 perm   1 sec   (6727 perm/sec)   p_kst 5.104000e-01   p_cons 2.667000e-01   p_joint 5.715000e-01

Outputting figure to mutsig2_images.part000000000094/KRTAP11-1.3_496_10000_0.5104_0.2667_0.5715.png
                gene_name: KRTAP11-1
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 26 percent done.
KRTAP13-1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.253337e-02	ci left: 2.731952e-01	ci right 2.909319e-01	k: 2820	n:10000
Cons ci ratio: 7.176357e-02	ci left: 2.214853e-01	ci right 2.380724e-01	k: 2297	n:10000
KS ci ratio: 3.639408e-02	ci left: 5.271675e-01	ci right 5.468110e-01	k: 5370	n:10000
KRTAP13-1   10000 perm   2 sec   (6604 perm/sec)   p_kst 5.370000e-01   p_cons 2.297000e-01   p_joint 2.820000e-01

Outputting figure to mutsig2_images.part000000000094/KRTAP13-1.3_523_10000_0.537_0.2297_0.282.png
                gene_name: KRTAP13-1
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 29 percent done.
KRTAP19-3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.509149e-01	ci left: 5.841227e-02	ci right 6.804410e-02	k: 631	n:10000
Cons ci ratio: 7.979698e-02	ci left: 1.865851e-01	ci right 2.021934e-01	k: 1943	n:10000
KS ci ratio: 1.648733e-01	ci left: 4.907401e-02	ci right 5.798834e-02	k: 534	n:10000
KRTAP19-3   10000 perm   1 sec   (6889 perm/sec)   p_kst 5.340000e-02   p_cons 1.943000e-01   p_joint 6.310000e-02

Joint ci ratio: 8.928718e-02	ci left: 8.396194e-02	ci right 9.185834e-02	k: 1757	n:20000
Cons ci ratio: 5.603246e-02	ci left: 1.910620e-01	ci right 2.021264e-01	k: 3931	n:20000
KS ci ratio: 1.229040e-01	ci left: 4.541801e-02	ci right 5.141416e-02	k: 967	n:20000
KRTAP19-3   20000 perm   3 sec   (6070 perm/sec)   p_kst 4.835000e-02   p_cons 1.965500e-01   p_joint 8.785000e-02

Joint ci ratio: 8.861434e-02	ci left: 5.851355e-02	ci right 6.397180e-02	k: 1836	n:30000
Cons ci ratio: 4.323238e-02	ci left: 2.104284e-01	ci right 2.197601e-01	k: 6452	n:30000
KS ci ratio: 9.984660e-02	ci left: 4.642167e-02	ci right 5.133284e-02	k: 1465	n:30000
KRTAP19-3   30000 perm   5 sec   (5762 perm/sec)   p_kst 4.883333e-02   p_cons 2.150667e-01   p_joint 6.120000e-02

Outputting figure to mutsig2_images.part000000000094/KRTAP19-3.3_250_30000_0.048833_0.21507_0.0612.png
                gene_name: KRTAP19-3
               theta_stop: 0.100 
                    nperm: 30000 
                     p_ks: 0.049 
        ci_ks_bounds_left: 0.046 
       ci_ks_bounds_right: 0.051 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.061 
     ci_joint_bounds_left: 0.059 
    ci_joint_bounds_right: 0.064 

Current progress: 32 percent done.
KY
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.118018e-02	ci left: 4.654705e-01	ci right 4.851439e-01	k: 4753	n:10000
Cons ci ratio: 9.956429e-02	ci left: 1.274785e-01	ci right 1.409354e-01	k: 1341	n:10000
KS ci ratio: 3.662888e-02	ci left: 5.239639e-01	ci right 5.436164e-01	k: 5338	n:10000
KY   10000 perm   2 sec   (5791 perm/sec)   p_kst 5.338000e-01   p_cons 1.341000e-01   p_joint 4.753000e-01

Outputting figure to mutsig2_images.part000000000094/KY.3_2030_10000_0.5338_0.1341_0.4753.png
                gene_name: KY
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 34 percent done.
KYNU
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.178368e-02	ci left: 5.936327e-01	ci right 6.129071e-01	k: 6033	n:10000
KS ci ratio: 2.007111e-02	ci left: 7.842146e-01	ci right 8.002148e-01	k: 7923	n:10000
KYNU   10000 perm   2 sec   (6350 perm/sec)   p_kst 7.923000e-01   p_cons 6.033000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000094/KYNU.3_1476_10000_0.7923_0.6033_1.png
                gene_name: KYNU
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 37 percent done.
L3MBTL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.953336e-02	ci left: 7.931392e-01	ci right 8.088851e-01	k: 8011	n:10000
Cons ci ratio: 3.905330e-02	ci left: 4.919509e-01	ci right 5.116480e-01	k: 5018	n:10000
KS ci ratio: 2.571600e-02	ci left: 6.900036e-01	ci right 7.080803e-01	k: 6991	n:10000
L3MBTL   10000 perm   2 sec   (5892 perm/sec)   p_kst 6.991000e-01   p_cons 5.018000e-01   p_joint 8.011000e-01

Outputting figure to mutsig2_images.part000000000094/L3MBTL.3_2488_10000_0.6991_0.5018_0.8011.png
                gene_name: L3MBTL
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 39 percent done.
KRTAP12-4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.779877e-02	ci left: 1.588536e-01	ci right 1.735414e-01	k: 1661	n:10000
Cons ci ratio: 1.075295e-01	ci left: 1.109577e-01	ci right 1.236661e-01	k: 1172	n:10000
KS ci ratio: 7.979698e-02	ci left: 1.865851e-01	ci right 2.021934e-01	k: 1943	n:10000
KRTAP12-4   10000 perm   1 sec   (7238 perm/sec)   p_kst 1.943000e-01   p_cons 1.172000e-01   p_joint 1.661000e-01

Joint ci ratio: 5.920113e-02	ci left: 1.744503e-01	ci right 1.851430e-01	k: 3595	n:20000
Cons ci ratio: 7.516773e-02	ci left: 1.151825e-01	ci right 1.242283e-01	k: 2393	n:20000
KS ci ratio: 5.622832e-02	ci left: 1.899738e-01	ci right 2.010149e-01	k: 3909	n:20000
KRTAP12-4   20000 perm   3 sec   (6373 perm/sec)   p_kst 1.954500e-01   p_cons 1.196500e-01   p_joint 1.797500e-01

Outputting figure to mutsig2_images.part000000000094/KRTAP12-4.2_343_20000_0.19545_0.11965_0.17975.png
                gene_name: KRTAP12-4
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.19 

Current progress: 42 percent done.
KRTAP13-2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.792091e-02	ci left: 3.911750e-01	ci right 4.104828e-01	k: 4008	n:10000
Cons ci ratio: 4.181286e-02	ci left: 4.578813e-01	ci right 4.775376e-01	k: 4677	n:10000
KS ci ratio: 9.390156e-02	ci left: 1.413875e-01	ci right 1.554180e-01	k: 1483	n:10000
KRTAP13-2   10000 perm   1 sec   (7113 perm/sec)   p_kst 1.483000e-01   p_cons 4.677000e-01   p_joint 4.008000e-01

Outputting figure to mutsig2_images.part000000000094/KRTAP13-2.2_532_10000_0.1483_0.4677_0.4008.png
                gene_name: KRTAP13-2
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 45 percent done.
KRTAP13-4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.105657e-02	ci left: 4.669687e-01	ci right 4.866448e-01	k: 4768	n:10000
Cons ci ratio: 3.533871e-02	ci left: 5.417887e-01	ci right 5.613813e-01	k: 5516	n:10000
KS ci ratio: 9.619643e-02	ci left: 1.355076e-01	ci right 1.493014e-01	k: 1423	n:10000
KRTAP13-4   10000 perm   1 sec   (6877 perm/sec)   p_kst 1.423000e-01   p_cons 5.516000e-01   p_joint 4.768000e-01

Outputting figure to mutsig2_images.part000000000094/KRTAP13-4.2_485_10000_0.1423_0.5516_0.4768.png
                gene_name: KRTAP13-4
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 47 percent done.
KRTAP19-5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.915936e-03	ci left: 9.569143e-01	ci right 9.646143e-01	k: 9609	n:10000
Cons ci ratio: 2.313256e-02	ci left: 7.330016e-01	ci right 7.502574e-01	k: 7417	n:10000
KS ci ratio: 1.639181e-02	ci left: 8.440725e-01	ci right 8.581223e-01	k: 8512	n:10000
KRTAP19-5   10000 perm   1 sec   (7234 perm/sec)   p_kst 8.512000e-01   p_cons 7.417000e-01   p_joint 9.609000e-01

Outputting figure to mutsig2_images.part000000000094/KRTAP19-5.2_222_10000_0.8512_0.7417_0.9609.png
                gene_name: KRTAP19-5
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.96 

Current progress: 50 percent done.
KRTAP21-1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.584033e-02	ci left: 4.125930e-01	ci right 4.320522e-01	k: 4223	n:10000
KS ci ratio: 2.831517e-02	ci left: 6.477018e-01	ci right 6.664067e-01	k: 6571	n:10000
KRTAP21-1   10000 perm   1 sec   (7304 perm/sec)   p_kst 6.571000e-01   p_cons 4.223000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000094/KRTAP21-1.2_242_10000_0.6571_0.4223_1.png
                gene_name: KRTAP21-1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 53 percent done.
KRTAP21-2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.548479e-02	ci left: 2.550834e-01	ci right 2.724544e-01	k: 2637	n:10000
Cons ci ratio: 2.008231e-01	ci left: 3.300513e-02	ci right 4.046787e-02	k: 366	n:10000
KS ci ratio: 8.329855e-02	ci left: 1.736942e-01	ci right 1.888919e-01	k: 1812	n:10000
KRTAP21-2   10000 perm   1 sec   (7268 perm/sec)   p_kst 1.812000e-01   p_cons 3.660000e-02   p_joint 2.637000e-01

Joint ci ratio: 5.954461e-02	ci left: 1.727702e-01	ci right 1.834235e-01	k: 3561	n:20000
Cons ci ratio: 1.441613e-01	ci left: 3.307475e-02	ci right 3.826138e-02	k: 712	n:20000
KS ci ratio: 5.939252e-02	ci left: 1.735114e-01	ci right 1.841821e-01	k: 3576	n:20000
KRTAP21-2   20000 perm   3 sec   (6396 perm/sec)   p_kst 1.788000e-01   p_cons 3.560000e-02   p_joint 1.780500e-01

Joint ci ratio: 4.788377e-02	ci left: 1.782095e-01	ci right 1.869854e-01	k: 5477	n:30000
Cons ci ratio: 1.189535e-01	ci left: 3.285172e-02	ci right 3.703897e-02	k: 1047	n:30000
KS ci ratio: 4.835961e-02	ci left: 1.753039e-01	ci right 1.840249e-01	k: 5389	n:30000
KRTAP21-2   30000 perm   5 sec   (6062 perm/sec)   p_kst 1.796333e-01   p_cons 3.490000e-02   p_joint 1.825667e-01

Joint ci ratio: 3.592038e-02	ci left: 2.252870e-01	ci right 2.335524e-01	k: 9176	n:40000
Cons ci ratio: 1.036854e-01	ci left: 3.270842e-02	ci right 3.630956e-02	k: 1379	n:40000
KS ci ratio: 4.174510e-02	ci left: 1.768409e-01	ci right 1.844055e-01	k: 7224	n:40000
KRTAP21-2   40000 perm   7 sec   (5830 perm/sec)   p_kst 1.806000e-01   p_cons 3.447500e-02   p_joint 2.294000e-01

Joint ci ratio: 8.626472e-02	ci left: 3.794657e-02	ci right 4.138714e-02	k: 1982	n:50000
Cons ci ratio: 9.307509e-02	ci left: 3.266317e-02	ci right 3.587119e-02	k: 1712	n:50000
KS ci ratio: 3.760826e-02	ci left: 1.751324e-01	ci right 1.818650e-01	k: 8924	n:50000
KRTAP21-2   50000 perm   9 sec   (5654 perm/sec)   p_kst 1.784800e-01   p_cons 3.424000e-02   p_joint 3.964000e-02

Outputting figure to mutsig2_images.part000000000094/KRTAP21-2.2_254_50000_0.17848_0.03424_0.03964.png
                gene_name: KRTAP21-2
               theta_stop: 0.093 
                    nperm: 50000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.034 
      ci_cons_bounds_left: 0.033 
     ci_cons_bounds_right: 0.036 
                  p_joint: 0.040 
     ci_joint_bounds_left: 0.038 
    ci_joint_bounds_right: 0.041 

Current progress: 55 percent done.
KRTAP24-1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.483366e-02	ci left: 2.589418e-01	ci right 2.763938e-01	k: 2676	n:10000
Cons ci ratio: 1.010478e-01	ci left: 1.241518e-01	ci right 1.374641e-01	k: 1307	n:10000
KS ci ratio: 4.409943e-02	ci left: 4.315362e-01	ci right 4.510980e-01	k: 4413	n:10000
KRTAP24-1   10000 perm   2 sec   (6508 perm/sec)   p_kst 4.413000e-01   p_cons 1.307000e-01   p_joint 2.676000e-01

Joint ci ratio: 5.700881e-02	ci left: 1.857207e-01	ci right 1.966692e-01	k: 3823	n:20000
Cons ci ratio: 7.161038e-02	ci left: 1.256143e-01	ci right 1.349934e-01	k: 2605	n:20000
KS ci ratio: 3.124903e-02	ci left: 4.334042e-01	ci right 4.472132e-01	k: 8806	n:20000
KRTAP24-1   20000 perm   3 sec   (5960 perm/sec)   p_kst 4.403000e-01   p_cons 1.302500e-01   p_joint 1.911500e-01

Outputting figure to mutsig2_images.part000000000094/KRTAP24-1.2_769_20000_0.4403_0.13025_0.19115.png
                gene_name: KRTAP24-1
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 58 percent done.
KRTAP27-1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.374718e-03	ci left: 9.621545e-01	ci right 9.693708e-01	k: 9659	n:10000
Cons ci ratio: 1.634004e-02	ci left: 8.448877e-01	ci right 8.589066e-01	k: 8520	n:10000
KS ci ratio: 3.441262e-02	ci left: 5.549149e-01	ci right 5.744474e-01	k: 5647	n:10000
KRTAP27-1   10000 perm   1 sec   (6927 perm/sec)   p_kst 5.647000e-01   p_cons 8.520000e-01   p_joint 9.659000e-01

Outputting figure to mutsig2_images.part000000000094/KRTAP27-1.2_628_10000_0.5647_0.852_0.9659.png
                gene_name: KRTAP27-1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 61 percent done.
KRTAP4-2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.417606e-03	ci left: 9.517953e-01	ci right 9.599365e-01	k: 9560	n:10000
Cons ci ratio: 1.799927e-02	ci left: 8.183233e-01	ci right 8.332864e-01	k: 8259	n:10000
KS ci ratio: 4.873855e-02	ci left: 3.831109e-01	ci right 4.023516e-01	k: 3927	n:10000
KRTAP4-2   10000 perm   1 sec   (7095 perm/sec)   p_kst 3.927000e-01   p_cons 8.259000e-01   p_joint 9.560000e-01

Outputting figure to mutsig2_images.part000000000094/KRTAP4-2.2_415_10000_0.3927_0.8259_0.956.png
                gene_name: KRTAP4-2
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 63 percent done.
KRTAP4-5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.697569e-02	ci left: 6.693457e-01	ci right 6.877502e-01	k: 6786	n:10000
KS ci ratio: 1.053044e-01	ci left: 1.152552e-01	ci right 1.281660e-01	k: 1216	n:10000
KRTAP4-5   10000 perm   1 sec   (6807 perm/sec)   p_kst 1.216000e-01   p_cons 6.786000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 1.915628e-02	ci left: 6.702175e-01	ci right 6.832310e-01	k: 13535	n:20000
KS ci ratio: 7.428916e-02	ci left: 1.176419e-01	ci right 1.267683e-01	k: 2443	n:20000
KRTAP4-5   20000 perm   3 sec   (6135 perm/sec)   p_kst 1.221500e-01   p_cons 6.767500e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000094/KRTAP4-5.2_550_20000_0.12215_0.67675_1.png
                gene_name: KRTAP4-5
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 66 percent done.
KRTAP5-10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.915270e-02	ci left: 7.994305e-01	ci right 8.149901e-01	k: 8073	n:10000
KS ci ratio: 5.524235e-02	ci left: 3.255497e-01	ci right 3.441466e-01	k: 3348	n:10000
KRTAP5-10   10000 perm   1 sec   (6780 perm/sec)   p_kst 3.348000e-01   p_cons 8.073000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000094/KRTAP5-10.2_613_10000_0.3348_0.8073_1.png
                gene_name: KRTAP5-10
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
KRTAP5-11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.237835e-02	ci left: 7.456379e-01	ci right 7.626138e-01	k: 7542	n:10000
Cons ci ratio: 1.528263e-02	ci left: 8.613106e-01	ci right 8.746743e-01	k: 8681	n:10000
KS ci ratio: 3.039364e-02	ci left: 6.149237e-01	ci right 6.340038e-01	k: 6245	n:10000
KRTAP5-11   10000 perm   1 sec   (7111 perm/sec)   p_kst 6.245000e-01   p_cons 8.681000e-01   p_joint 7.542000e-01

Outputting figure to mutsig2_images.part000000000094/KRTAP5-11.2_475_10000_0.6245_0.8681_0.7542.png
                gene_name: KRTAP5-11
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.76 

Current progress: 71 percent done.
KRTAP5-3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.877944e-02	ci left: 3.827127e-01	ci right 4.019500e-01	k: 3923	n:10000
Cons ci ratio: 6.592598e-02	ci left: 2.525117e-01	ci right 2.698276e-01	k: 2611	n:10000
KS ci ratio: 3.741616e-02	ci left: 5.133552e-01	ci right 5.330313e-01	k: 5232	n:10000
KRTAP5-3   10000 perm   1 sec   (6958 perm/sec)   p_kst 5.232000e-01   p_cons 2.611000e-01   p_joint 3.923000e-01

Outputting figure to mutsig2_images.part000000000094/KRTAP5-3.2_721_10000_0.5232_0.2611_0.3923.png
                gene_name: KRTAP5-3
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 74 percent done.
KRTAP5-6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.372829e-02	ci left: 8.845229e-01	ci right 8.968485e-01	k: 8908	n:10000
Cons ci ratio: 2.788293e-02	ci left: 6.546456e-01	ci right 6.732588e-01	k: 6640	n:10000
KS ci ratio: 3.602976e-02	ci left: 5.321738e-01	ci right 5.518018e-01	k: 5420	n:10000
KRTAP5-6   10000 perm   1 sec   (7210 perm/sec)   p_kst 5.420000e-01   p_cons 6.640000e-01   p_joint 8.908000e-01

Outputting figure to mutsig2_images.part000000000094/KRTAP5-6.2_394_10000_0.542_0.664_0.8908.png
                gene_name: KRTAP5-6
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.90 

Current progress: 76 percent done.
KRTAP9-2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.415757e-01	ci left: 6.613851e-02	ci right 7.631298e-02	k: 711	n:10000
Cons ci ratio: 7.512432e-02	ci left: 2.058972e-01	ci right 2.220697e-01	k: 2139	n:10000
KS ci ratio: 2.326663e-01	ci left: 2.438298e-02	ci right 3.089610e-02	k: 275	n:10000
KRTAP9-2   10000 perm   1 sec   (7215 perm/sec)   p_kst 2.750000e-02   p_cons 2.139000e-01   p_joint 7.110000e-02

Joint ci ratio: 6.030820e-02	ci left: 1.691144e-01	ci right 1.796805e-01	k: 3487	n:20000
Cons ci ratio: 4.994828e-02	ci left: 2.295341e-01	ci right 2.413429e-01	k: 4708	n:20000
KS ci ratio: 1.622704e-01	ci left: 2.604555e-02	ci right 3.069292e-02	k: 566	n:20000
KRTAP9-2   20000 perm   3 sec   (6348 perm/sec)   p_kst 2.830000e-02   p_cons 2.354000e-01   p_joint 1.743500e-01

Joint ci ratio: 8.287453e-02	ci left: 6.651671e-02	ci right 7.230035e-02	k: 2081	n:30000
Cons ci ratio: 4.085270e-02	ci left: 2.300127e-01	ci right 2.396387e-01	k: 7044	n:30000
KS ci ratio: 1.308024e-01	ci left: 2.716245e-02	ci right 3.099614e-02	k: 871	n:30000
KRTAP9-2   30000 perm   5 sec   (6015 perm/sec)   p_kst 2.903333e-02   p_cons 2.348000e-01   p_joint 6.936667e-02

Joint ci ratio: 8.033883e-02	ci left: 5.391376e-02	ci right 5.845095e-02	k: 2246	n:40000
Cons ci ratio: 3.567577e-02	ci left: 2.276966e-01	ci right 2.359924e-01	k: 9273	n:40000
KS ci ratio: 1.132118e-01	ci left: 2.745022e-02	ci right 3.076861e-02	k: 1163	n:40000
KRTAP9-2   40000 perm   7 sec   (5794 perm/sec)   p_kst 2.907500e-02   p_cons 2.318250e-01   p_joint 5.615000e-02

Joint ci ratio: 5.687616e-02	ci left: 8.428704e-02	ci right 8.924106e-02	k: 4337	n:50000
Cons ci ratio: 3.188703e-02	ci left: 2.283853e-01	ci right 2.358058e-01	k: 11604	n:50000
KS ci ratio: 1.006559e-01	ci left: 2.795622e-02	ci right 3.093875e-02	k: 1471	n:50000
KRTAP9-2   50000 perm   9 sec   (5614 perm/sec)   p_kst 2.942000e-02   p_cons 2.320800e-01   p_joint 8.674000e-02

Joint ci ratio: 6.263302e-02	ci left: 5.936067e-02	ci right 6.321523e-02	k: 3676	n:60000
Cons ci ratio: 2.919066e-02	ci left: 2.277152e-01	ci right 2.344775e-01	k: 13865	n:60000
KS ci ratio: 9.181640e-02	ci left: 2.812799e-02	ci right 3.085111e-02	k: 1768	n:60000
KRTAP9-2   60000 perm   11 sec   (5468 perm/sec)   p_kst 2.946667e-02   p_cons 2.310833e-01   p_joint 6.126667e-02

Outputting figure to mutsig2_images.part000000000094/KRTAP9-2.2_529_60000_0.029467_0.23108_0.061267.png
                gene_name: KRTAP9-2
               theta_stop: 0.092 
                    nperm: 60000 
                     p_ks: 0.029 
        ci_ks_bounds_left: 0.028 
       ci_ks_bounds_right: 0.031 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.061 
     ci_joint_bounds_left: 0.059 
    ci_joint_bounds_right: 0.063 

Current progress: 79 percent done.
KTI12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.995464e-02	ci left: 6.217570e-01	ci right 6.407665e-01	k: 6313	n:10000
KS ci ratio: 7.275060e-02	ci left: 2.167479e-01	ci right 2.332127e-01	k: 2249	n:10000
KTI12   10000 perm   2 sec   (6641 perm/sec)   p_kst 2.249000e-01   p_cons 6.313000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000094/KTI12.2_1069_10000_0.2249_0.6313_1.png
                gene_name: KTI12
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
L1CAM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.138550e-02	ci left: 1.805807e-01	ci right 1.960013e-01	k: 1882	n:10000
Cons ci ratio: 2.290325e-02	ci left: 7.368421e-01	ci right 7.540147e-01	k: 7455	n:10000
KS ci ratio: 2.772291e-01	ci left: 1.688052e-02	ci right 2.240432e-02	k: 195	n:10000
L1CAM   10000 perm   2 sec   (5546 perm/sec)   p_kst 1.950000e-02   p_cons 7.455000e-01   p_joint 1.882000e-01

Joint ci ratio: 5.049544e-02	ci left: 2.256687e-01	ci right 2.374094e-01	k: 4630	n:20000
Cons ci ratio: 1.631044e-02	ci left: 7.366823e-01	ci right 7.488470e-01	k: 14856	n:20000
KS ci ratio: 1.937784e-01	ci left: 1.810475e-02	ci right 2.203652e-02	k: 400	n:20000
L1CAM   20000 perm   4 sec   (4962 perm/sec)   p_kst 2.000000e-02   p_cons 7.428000e-01   p_joint 2.315000e-01

Joint ci ratio: 4.362887e-02	ci left: 2.073863e-01	ci right 2.166695e-01	k: 6360	n:30000
Cons ci ratio: 1.334883e-02	ci left: 7.369084e-01	ci right 7.468448e-01	k: 22257	n:30000
KS ci ratio: 1.566989e-01	ci left: 1.883025e-02	ci right 2.206356e-02	k: 612	n:30000
L1CAM   30000 perm   6 sec   (4745 perm/sec)   p_kst 2.040000e-02   p_cons 7.419000e-01   p_joint 2.120000e-01

Joint ci ratio: 4.240556e-02	ci left: 1.722791e-01	ci right 1.797679e-01	k: 7040	n:40000
Cons ci ratio: 1.155442e-02	ci left: 7.377828e-01	ci right 7.463820e-01	k: 29684	n:40000
KS ci ratio: 1.351442e-01	ci left: 1.920624e-02	ci right 2.201396e-02	k: 823	n:40000
L1CAM   40000 perm   9 sec   (4603 perm/sec)   p_kst 2.057500e-02   p_cons 7.421000e-01   p_joint 1.760000e-01

Joint ci ratio: 4.078864e-02	ci left: 1.527304e-01	ci right 1.591096e-01	k: 7795	n:50000
Cons ci ratio: 1.036267e-02	ci left: 7.371964e-01	ci right 7.448955e-01	k: 37053	n:50000
KS ci ratio: 1.219081e-01	ci left: 1.902359e-02	ci right 2.151254e-02	k: 1012	n:50000
L1CAM   50000 perm   11 sec   (4492 perm/sec)   p_kst 2.024000e-02   p_cons 7.410600e-01   p_joint 1.559000e-01

Joint ci ratio: 3.204158e-02	ci left: 1.964412e-01	ci right 2.028546e-01	k: 11978	n:60000
Cons ci ratio: 9.432927e-03	ci left: 7.386297e-01	ci right 7.456468e-01	k: 44529	n:60000
KS ci ratio: 1.114082e-01	ci left: 1.908923e-02	ci right 2.135751e-02	k: 1212	n:60000
L1CAM   60000 perm   14 sec   (4390 perm/sec)   p_kst 2.020000e-02   p_cons 7.421500e-01   p_joint 1.996333e-01

Joint ci ratio: 2.957950e-02	ci left: 1.975962e-01	ci right 2.035429e-01	k: 14039	n:70000
Cons ci ratio: 8.736947e-03	ci left: 7.387273e-01	ci right 7.452241e-01	k: 51939	n:70000
KS ci ratio: 1.030760e-01	ci left: 1.919845e-02	ci right 2.129873e-02	k: 1416	n:70000
L1CAM   70000 perm   16 sec   (4302 perm/sec)   p_kst 2.022857e-02   p_cons 7.419857e-01   p_joint 2.005571e-01

Joint ci ratio: 3.005533e-02	ci left: 1.727081e-01	ci right 1.779905e-01	k: 14027	n:80000
Cons ci ratio: 8.176899e-03	ci left: 7.387398e-01	ci right 7.448177e-01	k: 59343	n:80000
KS ci ratio: 9.591911e-02	ci left: 1.946820e-02	ci right 2.144179e-02	k: 1635	n:80000
L1CAM   80000 perm   19 sec   (4224 perm/sec)   p_kst 2.043750e-02   p_cons 7.417875e-01   p_joint 1.753375e-01

Outputting figure to mutsig2_images.part000000000094/L1CAM.2_3886_80000_0.020438_0.74179_0.17534.png
                gene_name: L1CAM
               theta_stop: 0.096 
                    nperm: 80000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.021 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 84 percent done.
L1TD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.255029e-03	ci left: 9.954855e-01	ci right 9.978102e-01	k: 9968	n:10000
KS ci ratio: 3.143295e-02	ci left: 5.989536e-01	ci right 6.181831e-01	k: 6086	n:10000
L1TD1   10000 perm   2 sec   (5897 perm/sec)   p_kst 6.086000e-01   p_cons 9.968000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000094/L1TD1.2_2606_10000_0.6086_0.9968_1.png
                gene_name: L1TD1
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
L3MBTL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.099457e-02	ci left: 7.688127e-01	ci right 7.852256e-01	k: 7771	n:10000
KS ci ratio: 4.993416e-02	ci left: 3.716666e-01	ci right 3.908027e-01	k: 3812	n:10000
L3MBTL2   10000 perm   2 sec   (6174 perm/sec)   p_kst 3.812000e-01   p_cons 7.771000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000094/L3MBTL2.2_2186_10000_0.3812_0.7771_1.png
                gene_name: L3MBTL2
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
LACTB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.100063e-02	ci left: 7.687114e-01	ci right 7.851269e-01	k: 7770	n:10000
Cons ci ratio: 5.604552e-02	ci left: 3.191965e-01	ci right 3.377036e-01	k: 3284	n:10000
KS ci ratio: 1.908499e-02	ci left: 8.005470e-01	ci right 8.160730e-01	k: 8084	n:10000
LACTB2   10000 perm   1 sec   (6844 perm/sec)   p_kst 8.084000e-01   p_cons 3.284000e-01   p_joint 7.770000e-01

Outputting figure to mutsig2_images.part000000000094/LACTB2.2_895_10000_0.8084_0.3284_0.777.png
                gene_name: LACTB2
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 92 percent done.
LAG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.127109e-02	ci left: 4.643719e-01	ci right 4.840431e-01	k: 4742	n:10000
KS ci ratio: 5.078065e-02	ci left: 3.638081e-01	ci right 3.828658e-01	k: 3733	n:10000
LAG3   10000 perm   2 sec   (6319 perm/sec)   p_kst 3.733000e-01   p_cons 4.742000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000094/LAG3.2_1610_10000_0.3733_0.4742_1.png
                gene_name: LAG3
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
LAGE3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.117267e-01	ci left: 1.034441e-01	ci right 1.157844e-01	k: 1095	n:10000
Cons ci ratio: 1.411493e-01	ci left: 6.652534e-02	ci right 7.672591e-02	k: 715	n:10000
KS ci ratio: 5.440970e-02	ci left: 3.323022e-01	ci right 3.509901e-01	k: 3416	n:10000
LAGE3   10000 perm   1 sec   (7019 perm/sec)   p_kst 3.416000e-01   p_cons 7.150000e-02   p_joint 1.095000e-01

Joint ci ratio: 7.612818e-02	ci left: 1.125763e-01	ci right 1.215353e-01	k: 2340	n:20000
Cons ci ratio: 1.001491e-01	ci left: 6.757588e-02	ci right 7.474940e-02	k: 1422	n:20000
KS ci ratio: 3.867094e-02	ci left: 3.327866e-01	ci right 3.459601e-01	k: 6787	n:20000
LAGE3   20000 perm   3 sec   (6148 perm/sec)   p_kst 3.393500e-01   p_cons 7.110000e-02   p_joint 1.170000e-01

Joint ci ratio: 9.222460e-02	ci left: 5.417457e-02	ci right 5.944500e-02	k: 1703	n:30000
Cons ci ratio: 8.125069e-02	ci left: 6.906716e-02	ci right 7.494938e-02	k: 2159	n:30000
KS ci ratio: 3.154654e-02	ci left: 3.344062e-01	ci right 3.451582e-01	k: 10193	n:30000
LAGE3   30000 perm   5 sec   (5841 perm/sec)   p_kst 3.397667e-01   p_cons 7.196667e-02   p_joint 5.676667e-02

Outputting figure to mutsig2_images.part000000000094/LAGE3.2_444_30000_0.33977_0.071967_0.056767.png
                gene_name: LAGE3
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.072 
      ci_cons_bounds_left: 0.069 
     ci_cons_bounds_right: 0.075 
                  p_joint: 0.057 
     ci_joint_bounds_left: 0.054 
    ci_joint_bounds_right: 0.059 

Current progress: 97 percent done.
LAIR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.162196e-02	ci left: 2.221762e-01	ci right 2.387810e-01	k: 2304	n:10000
Cons ci ratio: 1.525972e-01	ci left: 5.715872e-02	ci right 6.669845e-02	k: 618	n:10000
KS ci ratio: 3.191661e-02	ci left: 5.916250e-01	ci right 6.109159e-01	k: 6013	n:10000
LAIR1   10000 perm   1 sec   (6757 perm/sec)   p_kst 6.013000e-01   p_cons 6.180000e-02   p_joint 2.304000e-01

Joint ci ratio: 9.123533e-02	ci left: 8.063194e-02	ci right 8.838936e-02	k: 1689	n:20000
Cons ci ratio: 1.098083e-01	ci left: 5.660168e-02	ci right 6.322698e-02	k: 1197	n:20000
KS ci ratio: 2.253439e-02	ci left: 5.952269e-01	ci right 6.088434e-01	k: 12041	n:20000
LAIR1   20000 perm   3 sec   (5977 perm/sec)   p_kst 6.020500e-01   p_cons 5.985000e-02   p_joint 8.445000e-02

Joint ci ratio: 4.231877e-02	ci left: 2.176715e-01	ci right 2.271156e-01	k: 6671	n:30000
Cons ci ratio: 8.830750e-02	ci left: 5.890524e-02	ci right 6.438003e-02	k: 1848	n:30000
KS ci ratio: 1.841558e-02	ci left: 5.960672e-01	ci right 6.071797e-01	k: 18049	n:30000
LAIR1   30000 perm   5 sec   (5668 perm/sec)   p_kst 6.016333e-01   p_cons 6.160000e-02   p_joint 2.223667e-01

Outputting figure to mutsig2_images.part000000000094/LAIR1.2_904_30000_0.60163_0.0616_0.22237.png
                gene_name: LAIR1
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.062 
      ci_cons_bounds_left: 0.059 
     ci_cons_bounds_right: 0.064 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000094
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 94 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1644>
Subject: Job 8004217: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1644>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000095> was used as the working directory.
Started at Sun Nov 11 15:07:30 2012
Results reported at Sun Nov 11 15:17:44 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000095.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000095.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 95  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000095.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    655.49 sec.
    Max Memory :      4728 MB
    Max Swap   :      7085 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
95
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 95
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 95: processing genes 8505 - 8595
Calculating significance of each gene.
Using projection method.
8505	LAMA1	9.999938e-01
8506	LAMA2	9.766306e-01
8507	LAMA3	9.999979e-01
8508	LAMA4	8.031084e-01
8509	LAMA5	9.999849e-01
8510	LAMB1	6.430763e-01
8511	LAMB2	9.674469e-01
8512	LAMB3	9.628422e-01
8513	LAMB4	5.686455e-01
8514	LAMC1	8.726615e-01
8515	LAMC2	6.736648e-01
8516	LAMC3	9.673126e-01
8517	LAMP1	1
8518	LAMP2	1
8519	LAMP3	2.148956e-01
8520	LANCL1	6.755433e-01
8521	LANCL2	4.468311e-01
8522	LANCL3	1
8523	LAP3	1
8524	LAPTM4A	1
8525	LAPTM4B	3.186326e-01
8526	LAPTM5	2.010439e-02
8527	LARGE	1.337908e-02
8528	LARP1	9.872877e-01
8529	LARP1B	7.703580e-01
8530	LARP4	8.557270e-01
8531	LARP4B	9.260740e-01
8532	LARP6	7.000003e-01
8533	LARP7	2.742494e-01
8534	LARS	1
8535	LARS2	6.268731e-01
8536	LAS1L	1
8537	LASP1	1
8538	LASS1	1
8539	LASS2	4.911967e-01
8540	LASS3	2.999266e-01
8541	LASS4	4.784449e-01
8542	LASS5	1
8543	LASS6	7.880049e-01
8544	LAT	1
8545	LAT2	1
8546	LATS1	1
8547	LATS2	9.466562e-01
8548	LAX1	1.542522e-01
8549	LAYN	1
8550	LBH	1
8551	LBP	3.097990e-01
8552	LBR	1
8553	LBX1	1
8554	LBX2	1
8555	LBXCOR1	4.637408e-01
8556	LCA5	9.812928e-02
8557	LCA5L	1
8558	LCAT	1
8559	LCE1A	3.356177e-01
8560	LCE1B	1.261086e-02
8561	LCE1C	8.234275e-02
8562	LCE1D	1
8563	LCE1E	1
8564	LCE1F	1
8565	LCE2A	1
8566	LCE2B	9.891353e-02
8567	LCE2C	1
8568	LCE2D	9.419717e-03
8569	LCE3A	4.357911e-02
8570	LCE3D	3.197046e-01
8571	LCE3E	5.844866e-02
8572	LCE4A	6.694679e-02
8573	LCE5A	3.247032e-01
8574	LCK	2.289367e-01
8575	LCLAT1	5.005581e-01
8576	LCMT1	3.993971e-01
8577	LCMT2	1
8578	LCN1	2.968425e-01
8579	LCN10	1
8580	LCN12	1
8581	LCN15	1
8582	LCN2	2.779293e-01
8583	LCN6	1.463481e-01
8584	LCN8	3.254268e-02
8585	LCN9	4.264844e-01
8586	LCNL1	1
8587	LCOR	6.672473e-01
8588	LCORL	1
8589	LCP1	2.953923e-02
8590	LCP2	4.967991e-01
8591	LCT	9.943856e-01
8592	LCTL	3.058789e-01
8593	LDB1	1
8594	LDB2	1.003180e-03
8595	LDB3	9.571827e-01
Done

Running MutSig 2:
Scatter job 95: processing genes 8505 - 8595
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
LAMA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.789543e-02	ci left: 6.544443e-01	ci right 6.730602e-01	k: 6638	n:10000
Cons ci ratio: 2.647003e-02	ci left: 6.776064e-01	ci right 6.958847e-01	k: 6868	n:10000
KS ci ratio: 4.737663e-02	ci left: 3.966523e-01	ci right 4.160023e-01	k: 4063	n:10000
LAMA2   10000 perm   4 sec   (2828 perm/sec)   p_kst 4.063000e-01   p_cons 6.868000e-01   p_joint 6.638000e-01

Outputting figure to mutsig2_images.part000000000095/LAMA2.24_9629_10000_0.4063_0.6868_0.6638.png
                gene_name: LAMA2
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 2 percent done.
LCT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.108126e-02	ci left: 4.666691e-01	ci right 4.863446e-01	k: 4765	n:10000
Cons ci ratio: 7.419881e-02	ci left: 2.100392e-01	ci right 2.263253e-01	k: 2181	n:10000
KS ci ratio: 3.822641e-02	ci left: 5.026508e-01	ci right 5.223419e-01	k: 5125	n:10000
LCT   10000 perm   3 sec   (3961 perm/sec)   p_kst 5.125000e-01   p_cons 2.181000e-01   p_joint 4.765000e-01

Outputting figure to mutsig2_images.part000000000095/LCT.18_5852_10000_0.5125_0.2181_0.4765.png
                gene_name: LCT
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 4 percent done.
LAMA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.707758e-02	ci left: 3.112576e-01	ci right 3.296471e-01	k: 3204	n:10000
Cons ci ratio: 6.832654e-03	ci left: 9.670990e-01	ci right 9.738232e-01	k: 9706	n:10000
KS ci ratio: 7.463647e-02	ci left: 2.080667e-01	ci right 2.242990e-01	k: 2161	n:10000
LAMA4   10000 perm   3 sec   (3545 perm/sec)   p_kst 2.161000e-01   p_cons 9.706000e-01   p_joint 3.204000e-01

Outputting figure to mutsig2_images.part000000000095/LAMA4.16_5792_10000_0.2161_0.9706_0.3204.png
                gene_name: LAMA4
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 6 percent done.
LAMA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.714184e-02	ci left: 8.321569e-01	ci right 8.466448e-01	k: 8395	n:10000
Cons ci ratio: 2.000404e-02	ci left: 7.853299e-01	ci right 8.012989e-01	k: 7934	n:10000
KS ci ratio: 2.659928e-02	ci left: 6.754905e-01	ci right 6.938018e-01	k: 6847	n:10000
LAMA1   10000 perm   3 sec   (3324 perm/sec)   p_kst 6.847000e-01   p_cons 7.934000e-01   p_joint 8.395000e-01

Outputting figure to mutsig2_images.part000000000095/LAMA1.15_9480_10000_0.6847_0.7934_0.8395.png
                gene_name: LAMA1
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 8 percent done.
LARGE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.300599e-02	ci left: 5.753695e-01	ci right 5.947809e-01	k: 5851	n:10000
Cons ci ratio: 1.628821e-02	ci left: 8.457031e-01	ci right 8.596908e-01	k: 8528	n:10000
KS ci ratio: 4.195586e-02	ci left: 4.561840e-01	ci right 4.758358e-01	k: 4660	n:10000
LARGE   10000 perm   2 sec   (4819 perm/sec)   p_kst 4.660000e-01   p_cons 8.528000e-01   p_joint 5.851000e-01

Outputting figure to mutsig2_images.part000000000095/LARGE.12_2327_10000_0.466_0.8528_0.5851.png
                gene_name: LARGE
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.59 

Current progress: 10 percent done.
LAMA3
Processing conservation and coverage...
95% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.107050e-02	ci left: 9.209006e-01	ci right 9.312496e-01	k: 9262	n:10000
Cons ci ratio: 3.221025e-02	ci left: 5.872089e-01	ci right 6.065346e-01	k: 5969	n:10000
KS ci ratio: 6.772759e-03	ci left: 9.676262e-01	ci right 9.742956e-01	k: 9711	n:10000
LAMA3   10000 perm   3 sec   (3152 perm/sec)   p_kst 9.711000e-01   p_cons 5.969000e-01   p_joint 9.262000e-01

Outputting figure to mutsig2_images.part000000000095/LAMA3.10_10477_10000_0.9711_0.5969_0.9262.png
                gene_name: LAMA3
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 12 percent done.
LAMC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.127250e-02	ci left: 3.593329e-01	ci right 3.783435e-01	k: 3688	n:10000
Cons ci ratio: 8.981570e-02	ci left: 1.527663e-01	ci right 1.672324e-01	k: 1599	n:10000
KS ci ratio: 2.625495e-02	ci left: 6.811333e-01	ci right 6.993558e-01	k: 6903	n:10000
LAMC1   10000 perm   2 sec   (4841 perm/sec)   p_kst 6.903000e-01   p_cons 1.599000e-01   p_joint 3.688000e-01

Outputting figure to mutsig2_images.part000000000095/LAMC1.8_4942_10000_0.6903_0.1599_0.3688.png
                gene_name: LAMC1
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 14 percent done.
LAMA5
Processing conservation and coverage...
87% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.540566e-03	ci left: 9.605805e-01	ci right 9.679458e-01	k: 9644	n:10000
KS ci ratio: 8.307184e-03	ci left: 9.529432e-01	ci right 9.609878e-01	k: 9571	n:10000
LAMA5   10000 perm   3 sec   (3328 perm/sec)   p_kst 9.571000e-01   p_cons 9.644000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000095/LAMA5.7_11408_10000_0.9571_0.9644_1.png
                gene_name: LAMA5
               theta_stop: 0.0083 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 16 percent done.
LDB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.133409e-02	ci left: 6.004598e-01	ci right 6.196761e-01	k: 6101	n:10000
Cons ci ratio: 4.341748e-02	ci left: 4.392173e-01	ci right 4.588124e-01	k: 4490	n:10000
KS ci ratio: 3.143955e-02	ci left: 5.988532e-01	ci right 6.180835e-01	k: 6085	n:10000
LDB2   10000 perm   2 sec   (5646 perm/sec)   p_kst 6.085000e-01   p_cons 4.490000e-01   p_joint 6.101000e-01

Outputting figure to mutsig2_images.part000000000095/LDB2.7_1263_10000_0.6085_0.449_0.6101.png
                gene_name: LDB2
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 18 percent done.
LAMB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.549126e-02	ci left: 3.235641e-01	ci right 3.421333e-01	k: 3328	n:10000
Cons ci ratio: 3.572608e-02	ci left: 5.363798e-01	ci right 5.559932e-01	k: 5462	n:10000
KS ci ratio: 9.021878e-02	ci left: 1.515885e-01	ci right 1.660108e-01	k: 1587	n:10000
LAMB1   10000 perm   2 sec   (4325 perm/sec)   p_kst 1.587000e-01   p_cons 5.462000e-01   p_joint 3.328000e-01

Outputting figure to mutsig2_images.part000000000095/LAMB1.6_5493_10000_0.1587_0.5462_0.3328.png
                gene_name: LAMB1
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 20 percent done.
LAMB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.643060e-02	ci left: 8.434611e-01	ci right 8.575341e-01	k: 8506	n:10000
Cons ci ratio: 3.656271e-02	ci left: 5.248649e-01	ci right 5.445149e-01	k: 5347	n:10000
KS ci ratio: 2.184117e-02	ci left: 7.546407e-01	ci right 7.714058e-01	k: 7631	n:10000
LAMB4   10000 perm   2 sec   (4363 perm/sec)   p_kst 7.631000e-01   p_cons 5.347000e-01   p_joint 8.506000e-01

Outputting figure to mutsig2_images.part000000000095/LAMB4.6_5418_10000_0.7631_0.5347_0.8506.png
                gene_name: LAMB4
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 22 percent done.
LCP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.389664e-01	ci left: 6.855690e-02	ci right 7.889307e-02	k: 736	n:10000
Cons ci ratio: 4.397447e-02	ci left: 4.329326e-01	ci right 4.525008e-01	k: 4427	n:10000
KS ci ratio: 2.198857e-01	ci left: 2.740624e-02	ci right 3.427066e-02	k: 307	n:10000
LCP1   10000 perm   2 sec   (5428 perm/sec)   p_kst 3.070000e-02   p_cons 4.427000e-01   p_joint 7.360000e-02

Joint ci ratio: 1.292772e-01	ci left: 4.110215e-02	ci right 4.683139e-02	k: 878	n:20000
Cons ci ratio: 3.098103e-02	ci left: 4.376467e-01	ci right 4.514694e-01	k: 8891	n:20000
KS ci ratio: 1.541997e-01	ci left: 2.888197e-02	ci right 3.375555e-02	k: 625	n:20000
LCP1   20000 perm   4 sec   (4877 perm/sec)   p_kst 3.125000e-02   p_cons 4.445500e-01   p_joint 4.390000e-02

Joint ci ratio: 1.072904e-01	ci left: 4.030997e-02	ci right 4.491247e-02	k: 1277	n:30000
Cons ci ratio: 2.550167e-02	ci left: 4.349382e-01	ci right 4.462067e-01	k: 13217	n:30000
KS ci ratio: 1.289855e-01	ci left: 2.793717e-02	ci right 3.182125e-02	k: 895	n:30000
LCP1   30000 perm   6 sec   (4622 perm/sec)   p_kst 2.983333e-02   p_cons 4.405667e-01   p_joint 4.256667e-02

Joint ci ratio: 1.041553e-01	ci left: 3.241597e-02	ci right 3.600207e-02	k: 1367	n:40000
Cons ci ratio: 2.213214e-02	ci left: 4.346531e-01	ci right 4.444057e-01	k: 17581	n:40000
KS ci ratio: 1.114012e-01	ci left: 2.834996e-02	ci right 3.171872e-02	k: 1200	n:40000
LCP1   40000 perm   9 sec   (4489 perm/sec)   p_kst 3.000000e-02   p_cons 4.395250e-01   p_joint 3.417500e-02

Joint ci ratio: 7.623780e-02	ci left: 4.830221e-02	ci right 5.215023e-02	k: 2510	n:50000
Cons ci ratio: 1.979757e-02	ci left: 4.351232e-01	ci right 4.438438e-01	k: 21974	n:50000
KS ci ratio: 1.009744e-01	ci left: 2.778063e-02	ci right 3.075436e-02	k: 1462	n:50000
LCP1   50000 perm   11 sec   (4391 perm/sec)   p_kst 2.924000e-02   p_cons 4.394800e-01   p_joint 5.020000e-02

Joint ci ratio: 6.919973e-02	ci left: 4.900720e-02	ci right 5.253641e-02	k: 3045	n:60000
Cons ci ratio: 1.807811e-02	ci left: 4.353568e-01	ci right 4.433157e-01	k: 26360	n:60000
KS ci ratio: 9.262884e-02	ci left: 2.763920e-02	ci right 3.033995e-02	k: 1738	n:60000
LCP1   60000 perm   14 sec   (4307 perm/sec)   p_kst 2.896667e-02   p_cons 4.393333e-01   p_joint 5.075000e-02

Outputting figure to mutsig2_images.part000000000095/LCP1.6_1944_60000_0.028967_0.43933_0.05075.png
                gene_name: LCP1
               theta_stop: 0.093 
                    nperm: 60000 
                     p_ks: 0.029 
        ci_ks_bounds_left: 0.028 
       ci_ks_bounds_right: 0.030 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.051 
     ci_joint_bounds_left: 0.049 
    ci_joint_bounds_right: 0.053 

Current progress: 24 percent done.
LAMC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.058784e-02	ci left: 2.273104e-01	ci right 2.440439e-01	k: 2356	n:10000
Cons ci ratio: 1.140784e-01	ci left: 9.954457e-02	ci right 1.116863e-01	k: 1055	n:10000
KS ci ratio: 3.864930e-02	ci left: 4.971503e-01	ci right 5.168456e-01	k: 5070	n:10000
LAMC2   10000 perm   2 sec   (5273 perm/sec)   p_kst 5.070000e-01   p_cons 1.055000e-01   p_joint 2.356000e-01

Joint ci ratio: 4.208503e-02	ci left: 2.961381e-01	ci right 3.089194e-01	k: 6050	n:20000
Cons ci ratio: 8.201966e-02	ci left: 9.828040e-02	ci right 1.067356e-01	k: 2049	n:20000
KS ci ratio: 2.711337e-02	ci left: 5.040460e-01	ci right 5.179508e-01	k: 10220	n:20000
LAMC2   20000 perm   4 sec   (4763 perm/sec)   p_kst 5.110000e-01   p_cons 1.024500e-01   p_joint 3.025000e-01

Outputting figure to mutsig2_images.part000000000095/LAMC2.5_3682_20000_0.511_0.10245_0.3025.png
                gene_name: LAMC2
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.098 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 26 percent done.
LAMC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.677163e-02	ci left: 8.380620e-01	ci right 8.523363e-01	k: 8453	n:10000
Cons ci ratio: 2.205851e-02	ci left: 7.509985e-01	ci right 7.678501e-01	k: 7595	n:10000
KS ci ratio: 2.578324e-02	ci left: 6.888946e-01	ci right 7.069900e-01	k: 6980	n:10000
LAMC3   10000 perm   2 sec   (4552 perm/sec)   p_kst 6.980000e-01   p_cons 7.595000e-01   p_joint 8.453000e-01

Outputting figure to mutsig2_images.part000000000095/LAMC3.5_4840_10000_0.698_0.7595_0.8453.png
                gene_name: LAMC3
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 28 percent done.
LARP4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.257878e-02	ci left: 9.008303e-01	ci right 9.123316e-01	k: 9067	n:10000
Cons ci ratio: 2.524022e-02	ci left: 6.978692e-01	ci right 7.158101e-01	k: 7069	n:10000
KS ci ratio: 2.061858e-02	ci left: 7.750931e-01	ci right 7.913416e-01	k: 7833	n:10000
LARP4B   10000 perm   2 sec   (5775 perm/sec)   p_kst 7.833000e-01   p_cons 7.069000e-01   p_joint 9.067000e-01

Outputting figure to mutsig2_images.part000000000095/LARP4B.5_2285_10000_0.7833_0.7069_0.9067.png
                gene_name: LARP4B
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 30 percent done.
LAS1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.417103e-02	ci left: 4.307383e-01	ci right 4.502963e-01	k: 4405	n:10000
Cons ci ratio: 5.335816e-03	ci left: 9.790923e-01	ci right 9.844218e-01	k: 9819	n:10000
KS ci ratio: 7.402527e-02	ci left: 2.108283e-01	ci right 2.271357e-01	k: 2189	n:10000
LAS1L   10000 perm   2 sec   (5196 perm/sec)   p_kst 2.189000e-01   p_cons 9.819000e-01   p_joint 4.405000e-01

Outputting figure to mutsig2_images.part000000000095/LAS1L.5_2261_10000_0.2189_0.9819_0.4405.png
                gene_name: LAS1L
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 32 percent done.
LCA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.917062e-02	ci left: 4.904513e-01	ci right 5.101485e-01	k: 5003	n:10000
Cons ci ratio: 4.953441e-02	ci left: 3.754476e-01	ci right 3.946195e-01	k: 3850	n:10000
KS ci ratio: 4.060676e-02	ci left: 4.724627e-01	ci right 4.921476e-01	k: 4823	n:10000
LCA5   10000 perm   2 sec   (5300 perm/sec)   p_kst 4.823000e-01   p_cons 3.850000e-01   p_joint 5.003000e-01

Outputting figure to mutsig2_images.part000000000095/LCA5.5_2122_10000_0.4823_0.385_0.5003.png
                gene_name: LCA5
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 34 percent done.
LAMB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.254881e-02	ci left: 2.730962e-01	ci right 2.908310e-01	k: 2819	n:10000
Cons ci ratio: 6.849801e-02	ci left: 2.381767e-01	ci right 2.551711e-01	k: 2466	n:10000
KS ci ratio: 9.187494e-02	ci left: 1.468790e-01	ci right 1.611232e-01	k: 1539	n:10000
LAMB2   10000 perm   2 sec   (4592 perm/sec)   p_kst 1.539000e-01   p_cons 2.466000e-01   p_joint 2.819000e-01

Outputting figure to mutsig2_images.part000000000095/LAMB2.4_5525_10000_0.1539_0.2466_0.2819.png
                gene_name: LAMB2
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 36 percent done.
LAPTM5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.977477e-02	ci left: 6.245712e-01	ci right 6.435506e-01	k: 6341	n:10000
Cons ci ratio: 6.691387e-02	ci left: 2.468751e-01	ci right 2.640676e-01	k: 2554	n:10000
KS ci ratio: 3.019958e-02	ci left: 6.179381e-01	ci right 6.369876e-01	k: 6275	n:10000
LAPTM5   10000 perm   2 sec   (6152 perm/sec)   p_kst 6.275000e-01   p_cons 2.554000e-01   p_joint 6.341000e-01

Outputting figure to mutsig2_images.part000000000095/LAPTM5.4_821_10000_0.6275_0.2554_0.6341.png
                gene_name: LAPTM5
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 38 percent done.
LBP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.702584e-01	ci left: 5.284222e-03	ci right 8.612765e-03	k: 68	n:10000
Cons ci ratio: 7.397357e-01	ci left: 1.780048e-03	ci right 3.925945e-03	k: 27	n:10000
KS ci ratio: 7.849617e-02	ci left: 1.917059e-01	ci right 2.074695e-01	k: 1995	n:10000
LBP   10000 perm   2 sec   (6218 perm/sec)   p_kst 1.995000e-01   p_cons 2.700000e-03   p_joint 6.800000e-03

Joint ci ratio: 4.373811e-01	ci left: 3.128462e-03	ci right 4.920482e-03	k: 79	n:20000
Cons ci ratio: 4.892032e-01	ci left: 2.421370e-03	ci right 4.028444e-03	k: 63	n:20000
KS ci ratio: 5.487967e-02	ci left: 1.976418e-01	ci right 2.088446e-01	k: 4064	n:20000
LBP   20000 perm   4 sec   (5521 perm/sec)   p_kst 2.032000e-01   p_cons 3.150000e-03   p_joint 3.950000e-03

Joint ci ratio: 2.214841e-01	ci left: 9.188445e-03	ci right 1.150785e-02	k: 309	n:30000
Cons ci ratio: 4.080544e-01	ci left: 2.442933e-03	ci right 3.722974e-03	k: 91	n:30000
KS ci ratio: 4.450030e-02	ci left: 2.009066e-01	ci right 2.100838e-01	k: 6164	n:30000
LBP   30000 perm   6 sec   (5239 perm/sec)   p_kst 2.054667e-01   p_cons 3.033333e-03   p_joint 1.030000e-02

Joint ci ratio: 2.289542e-01	ci left: 6.442035e-03	ci right 8.130681e-03	k: 290	n:40000
Cons ci ratio: 3.432433e-01	ci left: 2.693205e-03	ci right 3.830801e-03	k: 129	n:40000
KS ci ratio: 3.831856e-02	ci left: 2.033859e-01	ci right 2.113566e-01	k: 8294	n:40000
LBP   40000 perm   8 sec   (5052 perm/sec)   p_kst 2.073500e-01   p_cons 3.225000e-03   p_joint 7.250000e-03

Joint ci ratio: 2.174068e-01	ci left: 5.757640e-03	ci right 7.180572e-03	k: 322	n:50000
Cons ci ratio: 3.113622e-01	ci left: 2.668646e-03	ci right 3.670412e-03	k: 157	n:50000
KS ci ratio: 3.422480e-02	ci left: 2.042706e-01	ci right 2.114034e-01	k: 10391	n:50000
LBP   50000 perm   10 sec   (4912 perm/sec)   p_kst 2.078200e-01   p_cons 3.140000e-03   p_joint 6.440000e-03

Joint ci ratio: 1.934064e-01	ci left: 6.142172e-03	ci right 7.472873e-03	k: 407	n:60000
Cons ci ratio: 2.674852e-01	ci left: 3.089918e-03	ci right 4.059079e-03	k: 213	n:60000
KS ci ratio: 3.117249e-02	ci left: 2.053216e-01	ci right 2.118399e-01	k: 12514	n:60000
LBP   60000 perm   13 sec   (4795 perm/sec)   p_kst 2.085667e-01   p_cons 3.550000e-03   p_joint 6.783333e-03

Joint ci ratio: 1.831729e-01	ci left: 5.904447e-03	ci right 7.108438e-03	k: 454	n:70000
Cons ci ratio: 2.520726e-01	ci left: 3.009101e-03	ci right 3.889995e-03	k: 240	n:70000
KS ci ratio: 2.892251e-02	ci left: 2.048562e-01	ci right 2.108823e-01	k: 14550	n:70000
LBP   70000 perm   15 sec   (4692 perm/sec)   p_kst 2.078571e-01   p_cons 3.428571e-03   p_joint 6.485714e-03

Joint ci ratio: 1.928608e-01	ci left: 4.641961e-03	ci right 5.644442e-03	k: 410	n:80000
Cons ci ratio: 2.359768e-01	ci left: 3.032005e-03	ci right 3.854655e-03	k: 274	n:80000
KS ci ratio: 2.698870e-02	ci left: 2.058510e-01	ci right 2.114951e-01	k: 16693	n:80000
LBP   80000 perm   17 sec   (4597 perm/sec)   p_kst 2.086625e-01   p_cons 3.425000e-03   p_joint 5.125000e-03

Joint ci ratio: 1.833063e-01	ci left: 4.592056e-03	ci right 5.529170e-03	k: 454	n:90000
Cons ci ratio: 2.267020e-01	ci left: 2.935847e-03	ci right 3.696722e-03	k: 297	n:90000
KS ci ratio: 2.544841e-02	ci left: 2.059715e-01	ci right 2.112917e-01	k: 18776	n:90000
LBP   90000 perm   20 sec   (4505 perm/sec)   p_kst 2.086222e-01   p_cons 3.300000e-03   p_joint 5.044444e-03

Joint ci ratio: 1.755753e-01	ci left: 4.524426e-03	ci right 5.404664e-03	k: 495	n:100000
Cons ci ratio: 2.134929e-01	ci left: 3.001340e-03	ci right 3.727937e-03	k: 335	n:100000
KS ci ratio: 2.415005e-02	ci left: 2.060056e-01	ci right 2.110514e-01	k: 20852	n:100000
LBP   100000 perm   23 sec   (4423 perm/sec)   p_kst 2.085200e-01   p_cons 3.350000e-03   p_joint 4.950000e-03

Joint ci ratio: 1.821888e-01	ci left: 3.809044e-03	ci right 4.581093e-03	k: 460	n:110000
Cons ci ratio: 2.065509e-01	ci left: 2.926575e-03	ci right 3.609121e-03	k: 358	n:110000
KS ci ratio: 2.304668e-02	ci left: 2.058309e-01	ci right 2.106390e-01	k: 22905	n:110000
LBP   110000 perm   25 sec   (4339 perm/sec)   p_kst 2.082273e-01   p_cons 3.254545e-03   p_joint 4.181818e-03

Joint ci ratio: 1.231950e-01	ci left: 7.850972e-03	ci right 8.889664e-03	k: 1003	n:120000
Cons ci ratio: 1.964126e-01	ci left: 2.983401e-03	ci right 3.640964e-03	k: 396	n:120000
KS ci ratio: 2.208861e-02	ci left: 2.055903e-01	ci right 2.101905e-01	k: 24946	n:120000
LBP   120000 perm   28 sec   (4262 perm/sec)   p_kst 2.078833e-01   p_cons 3.300000e-03   p_joint 8.358333e-03

Joint ci ratio: 1.636856e-01	ci left: 4.032702e-03	ci right 4.758909e-03	k: 570	n:130000
Cons ci ratio: 1.852980e-01	ci left: 3.112854e-03	ci right 3.755764e-03	k: 445	n:130000
KS ci ratio: 2.121111e-02	ci left: 2.058500e-01	ci right 2.102707e-01	k: 27047	n:130000
LBP   130000 perm   31 sec   (4189 perm/sec)   p_kst 2.080538e-01   p_cons 3.423077e-03   p_joint 4.384615e-03

Joint ci ratio: 1.669726e-01	ci left: 3.593941e-03	ci right 4.255437e-03	k: 548	n:140000
Cons ci ratio: 1.775053e-01	ci left: 3.163259e-03	ci right 3.786156e-03	k: 485	n:140000
KS ci ratio: 2.044690e-02	ci left: 2.058124e-01	ci right 2.100712e-01	k: 29111	n:140000
LBP   140000 perm   34 sec   (4123 perm/sec)   p_kst 2.079357e-01   p_cons 3.464286e-03   p_joint 3.914286e-03

Joint ci ratio: 1.098365e-01	ci left: 7.957298e-03	ci right 8.888520e-03	k: 1262	n:150000
Cons ci ratio: 1.711100e-01	ci left: 3.188286e-03	ci right 3.791157e-03	k: 522	n:150000
KS ci ratio: 1.976536e-02	ci left: 2.056893e-01	ci right 2.098020e-01	k: 31161	n:150000
LBP   150000 perm   37 sec   (4061 perm/sec)   p_kst 2.077400e-01   p_cons 3.480000e-03   p_joint 8.413333e-03

Joint ci ratio: 1.096908e-01	ci left: 7.484180e-03	ci right 8.358792e-03	k: 1266	n:160000
Cons ci ratio: 1.649169e-01	ci left: 3.228514e-03	ci right 3.814704e-03	k: 562	n:160000
KS ci ratio: 1.913100e-02	ci left: 2.058702e-01	ci right 2.098529e-01	k: 33257	n:160000
LBP   160000 perm   40 sec   (4001 perm/sec)   p_kst 2.078562e-01   p_cons 3.512500e-03   p_joint 7.912500e-03

Joint ci ratio: 1.126657e-01	ci left: 6.672053e-03	ci right 7.474307e-03	k: 1201	n:170000
Cons ci ratio: 1.593509e-01	ci left: 3.264355e-03	ci right 3.835135e-03	k: 602	n:170000
KS ci ratio: 1.854113e-02	ci left: 2.062603e-01	ci right 2.101262e-01	k: 35392	n:170000
LBP   170000 perm   43 sec   (3935 perm/sec)   p_kst 2.081882e-01   p_cons 3.541176e-03   p_joint 7.064706e-03

Joint ci ratio: 1.157829e-01	ci left: 5.961255e-03	ci right 6.699225e-03	k: 1138	n:180000
Cons ci ratio: 1.550406e-01	ci left: 3.264461e-03	ci right 3.818385e-03	k: 636	n:180000
KS ci ratio: 1.803787e-02	ci left: 2.059663e-01	ci right 2.097208e-01	k: 37411	n:180000
LBP   180000 perm   46 sec   (3873 perm/sec)   p_kst 2.078389e-01   p_cons 3.533333e-03   p_joint 6.322222e-03

Joint ci ratio: 1.126137e-01	ci left: 5.979841e-03	ci right 6.698504e-03	k: 1203	n:190000
Cons ci ratio: 1.505004e-01	ci left: 3.290068e-03	ci right 3.830516e-03	k: 675	n:190000
KS ci ratio: 1.756757e-02	ci left: 2.058148e-01	ci right 2.094678e-01	k: 39451	n:190000
LBP   190000 perm   50 sec   (3812 perm/sec)   p_kst 2.076368e-01   p_cons 3.552632e-03   p_joint 6.331579e-03

Joint ci ratio: 1.016214e-01	ci left: 7.009549e-03	ci right 7.764835e-03	k: 1476	n:200000
Cons ci ratio: 1.465429e-01	ci left: 3.303692e-03	ci right 3.830858e-03	k: 712	n:200000
KS ci ratio: 1.715859e-02	ci left: 2.051763e-01	ci right 2.087322e-01	k: 41390	n:200000
LBP   200000 perm   53 sec   (3756 perm/sec)   p_kst 2.069500e-01   p_cons 3.560000e-03   p_joint 7.380000e-03

Joint ci ratio: 1.008855e-01	ci left: 6.777829e-03	ci right 7.502543e-03	k: 1498	n:210000
Cons ci ratio: 1.426912e-01	ci left: 3.325371e-03	ci right 3.840862e-03	k: 751	n:210000
KS ci ratio: 1.674860e-02	ci left: 2.051501e-01	ci right 2.086199e-01	k: 43445	n:210000
LBP   210000 perm   57 sec   (3701 perm/sec)   p_kst 2.068810e-01   p_cons 3.576190e-03   p_joint 7.133333e-03

Joint ci ratio: 1.000322e-01	ci left: 6.584925e-03	ci right 7.282707e-03	k: 1524	n:220000
Cons ci ratio: 1.400191e-01	ci left: 3.301371e-03	ci right 3.802759e-03	k: 780	n:220000
KS ci ratio: 1.636689e-02	ci left: 2.051228e-01	ci right 2.085122e-01	k: 45499	n:220000
LBP   220000 perm   60 sec   (3649 perm/sec)   p_kst 2.068136e-01   p_cons 3.545455e-03   p_joint 6.927273e-03

Joint ci ratio: 9.818496e-02	ci left: 6.544540e-03	ci right 7.224498e-03	k: 1582	n:230000
Cons ci ratio: 1.364809e-01	ci left: 3.329932e-03	ci right 3.821840e-03	k: 821	n:230000
KS ci ratio: 1.601206e-02	ci left: 2.050596e-01	ci right 2.083739e-01	k: 47544	n:230000
LBP   230000 perm   64 sec   (3598 perm/sec)   p_kst 2.067130e-01   p_cons 3.569565e-03   p_joint 6.878261e-03

Joint ci ratio: 9.703358e-02	ci left: 6.426300e-03	ci right 7.085697e-03	k: 1620	n:240000
Cons ci ratio: 1.337434e-01	ci left: 3.328063e-03	ci right 3.809049e-03	k: 855	n:240000
KS ci ratio: 1.567456e-02	ci left: 2.051022e-01	ci right 2.083466e-01	k: 49613	n:240000
LBP   240000 perm   68 sec   (3548 perm/sec)   p_kst 2.067208e-01   p_cons 3.562500e-03   p_joint 6.750000e-03

Joint ci ratio: 9.580536e-02	ci left: 6.333182e-03	ci right 6.974336e-03	k: 1662	n:250000
Cons ci ratio: 1.317600e-01	ci left: 3.295483e-03	ci right 3.764144e-03	k: 881	n:250000
KS ci ratio: 1.535193e-02	ci left: 2.052617e-01	ci right 2.084411e-01	k: 51712	n:250000
LBP   250000 perm   72 sec   (3496 perm/sec)   p_kst 2.068480e-01   p_cons 3.524000e-03   p_joint 6.648000e-03

Joint ci ratio: 8.896701e-02	ci left: 7.081669e-03	ci right 7.744768e-03	k: 1926	n:260000
Cons ci ratio: 1.289392e-01	ci left: 3.313844e-03	ci right 3.774255e-03	k: 920	n:260000
KS ci ratio: 1.504508e-02	ci left: 2.054824e-01	ci right 2.086011e-01	k: 53830	n:260000
LBP   260000 perm   75 sec   (3447 perm/sec)   p_kst 2.070385e-01   p_cons 3.538462e-03   p_joint 7.407692e-03

Joint ci ratio: 8.849494e-02	ci left: 6.895407e-03	ci right 7.537461e-03	k: 1947	n:270000
Cons ci ratio: 1.262921e-01	ci left: 3.330944e-03	ci right 3.783519e-03	k: 959	n:270000
KS ci ratio: 1.476008e-02	ci left: 2.055950e-01	ci right 2.086558e-01	k: 55923	n:270000
LBP   270000 perm   79 sec   (3399 perm/sec)   p_kst 2.071222e-01   p_cons 3.551852e-03   p_joint 7.211111e-03

Joint ci ratio: 8.862103e-02	ci left: 6.631641e-03	ci right 7.250059e-03	k: 1942	n:280000
Cons ci ratio: 1.235537e-01	ci left: 3.360758e-03	ci right 3.806758e-03	k: 1002	n:280000
KS ci ratio: 1.448549e-02	ci left: 2.058176e-01	ci right 2.088242e-01	k: 58049	n:280000
LBP   280000 perm   84 sec   (3353 perm/sec)   p_kst 2.073179e-01   p_cons 3.578571e-03   p_joint 6.935714e-03

Joint ci ratio: 8.831197e-02	ci left: 6.450145e-03	ci right 7.049431e-03	k: 1956	n:290000
Cons ci ratio: 1.214529e-01	ci left: 3.361861e-03	ci right 3.799876e-03	k: 1037	n:290000
KS ci ratio: 1.423492e-02	ci left: 2.058121e-01	ci right 2.087662e-01	k: 60113	n:290000
LBP   290000 perm   88 sec   (3309 perm/sec)   p_kst 2.072862e-01   p_cons 3.575862e-03   p_joint 6.744828e-03

Joint ci ratio: 8.832198e-02	ci left: 6.235110e-03	ci right 6.814485e-03	k: 1956	n:300000
Cons ci ratio: 1.197362e-01	ci left: 3.346781e-03	ci right 3.776231e-03	k: 1067	n:300000
KS ci ratio: 1.399849e-02	ci left: 2.057708e-01	ci right 2.086749e-01	k: 62166	n:300000
LBP   300000 perm   92 sec   (3266 perm/sec)   p_kst 2.072200e-01   p_cons 3.556667e-03   p_joint 6.520000e-03

Joint ci ratio: 8.833133e-02	ci left: 6.033949e-03	ci right 6.594695e-03	k: 1956	n:310000
Cons ci ratio: 1.178749e-01	ci left: 3.345238e-03	ci right 3.767353e-03	k: 1101	n:310000
KS ci ratio: 1.377468e-02	ci left: 2.057036e-01	ci right 2.085599e-01	k: 64210	n:310000
LBP   310000 perm   96 sec   (3225 perm/sec)   p_kst 2.071290e-01   p_cons 3.551613e-03   p_joint 6.309677e-03

Joint ci ratio: 8.613143e-02	ci left: 6.154145e-03	ci right 6.711100e-03	k: 2057	n:320000
Cons ci ratio: 1.158422e-01	ci left: 3.359013e-03	ci right 3.775057e-03	k: 1140	n:320000
KS ci ratio: 1.378154e-02	ci left: 2.004137e-01	ci right 2.031980e-01	k: 64577	n:320000
LBP   320000 perm   100 sec   (3186 perm/sec)   p_kst 2.018031e-01   p_cons 3.562500e-03   p_joint 6.428125e-03

Joint ci ratio: 8.490324e-02	ci left: 6.145584e-03	ci right 6.693441e-03	k: 2117	n:330000
Cons ci ratio: 1.141055e-01	ci left: 3.360235e-03	ci right 3.769771e-03	k: 1175	n:330000
KS ci ratio: 1.357470e-02	ci left: 2.003502e-01	ci right 2.030914e-01	k: 66567	n:330000
LBP   330000 perm   105 sec   (3148 perm/sec)   p_kst 2.017182e-01   p_cons 3.560606e-03   p_joint 6.415152e-03

Joint ci ratio: 8.234842e-02	ci left: 6.347855e-03	ci right 6.895899e-03	k: 2250	n:340000
Cons ci ratio: 1.123980e-01	ci left: 3.364288e-03	ci right 3.767775e-03	k: 1211	n:340000
KS ci ratio: 1.337654e-02	ci left: 2.002995e-01	ci right 2.029997e-01	k: 68560	n:340000
LBP   340000 perm   109 sec   (3111 perm/sec)   p_kst 2.016471e-01   p_cons 3.561765e-03   p_joint 6.617647e-03

Joint ci ratio: 8.125543e-02	ci left: 6.337207e-03	ci right 6.876725e-03	k: 2311	n:350000
Cons ci ratio: 1.107205e-01	ci left: 3.370931e-03	ci right 3.768787e-03	k: 1248	n:350000
KS ci ratio: 1.318061e-02	ci left: 2.004030e-01	ci right 2.030648e-01	k: 70606	n:350000
LBP   350000 perm   114 sec   (3073 perm/sec)   p_kst 2.017314e-01   p_cons 3.565714e-03   p_joint 6.602857e-03

Joint ci ratio: 7.500311e-02	ci left: 7.248007e-03	ci right 7.815518e-03	k: 2710	n:360000
Cons ci ratio: 1.096736e-01	ci left: 3.342120e-03	ci right 3.732605e-03	k: 1272	n:360000
KS ci ratio: 1.299260e-02	ci left: 2.005122e-01	ci right 2.031371e-01	k: 72656	n:360000
LBP   360000 perm   119 sec   (3037 perm/sec)   p_kst 2.018222e-01   p_cons 3.533333e-03   p_joint 7.527778e-03

Joint ci ratio: 7.409397e-02	ci left: 7.229818e-03	ci right 7.788747e-03	k: 2777	n:370000
Cons ci ratio: 1.084881e-01	ci left: 3.325402e-03	ci right 3.709465e-03	k: 1300	n:370000
KS ci ratio: 1.281295e-02	ci left: 2.006022e-01	ci right 2.031917e-01	k: 74701	n:370000
LBP   370000 perm   123 sec   (3001 perm/sec)   p_kst 2.018946e-01   p_cons 3.513514e-03   p_joint 7.505405e-03

Joint ci ratio: 7.321710e-02	ci left: 7.212626e-03	ci right 7.763346e-03	k: 2844	n:380000
Cons ci ratio: 1.073402e-01	ci left: 3.309585e-03	ci right 3.687522e-03	k: 1328	n:380000
KS ci ratio: 1.264767e-02	ci left: 2.005065e-01	ci right 2.030612e-01	k: 76677	n:380000
LBP   380000 perm   128 sec   (2966 perm/sec)   p_kst 2.017816e-01   p_cons 3.494737e-03   p_joint 7.484211e-03

Joint ci ratio: 7.292781e-02	ci left: 7.085566e-03	ci right 7.624356e-03	k: 2867	n:390000
Cons ci ratio: 1.061495e-01	ci left: 3.299592e-03	ci right 3.671947e-03	k: 1358	n:390000
KS ci ratio: 1.248445e-02	ci left: 2.005234e-01	ci right 2.030451e-01	k: 78695	n:390000
LBP   390000 perm   133 sec   (2933 perm/sec)   p_kst 2.017821e-01   p_cons 3.482051e-03   p_joint 7.351282e-03

Joint ci ratio: 7.200476e-02	ci left: 7.090075e-03	ci right 7.622099e-03	k: 2941	n:400000
Cons ci ratio: 1.048461e-01	ci left: 3.299860e-03	ci right 3.667391e-03	k: 1392	n:400000
KS ci ratio: 1.232864e-02	ci left: 2.005073e-01	ci right 2.029970e-01	k: 80700	n:400000
LBP   400000 perm   138 sec   (2900 perm/sec)   p_kst 2.017500e-01   p_cons 3.480000e-03   p_joint 7.352500e-03

Joint ci ratio: 7.280053e-02	ci left: 6.766229e-03	ci right 7.279800e-03	k: 2878	n:410000
Cons ci ratio: 1.036991e-01	ci left: 3.293013e-03	ci right 3.655524e-03	k: 1423	n:410000
KS ci ratio: 1.217566e-02	ci left: 2.005675e-01	ci right 2.030269e-01	k: 82736	n:410000
LBP   410000 perm   143 sec   (2868 perm/sec)   p_kst 2.017951e-01   p_cons 3.470732e-03   p_joint 7.019512e-03

Joint ci ratio: 7.211627e-02	ci left: 6.733704e-03	ci right 7.239800e-03	k: 2933	n:420000
Cons ci ratio: 1.022370e-01	ci left: 3.309714e-03	ci right 3.668618e-03	k: 1464	n:420000
KS ci ratio: 1.202823e-02	ci left: 2.006251e-01	ci right 2.030552e-01	k: 84772	n:420000
LBP   420000 perm   148 sec   (2836 perm/sec)   p_kst 2.018381e-01   p_cons 3.485714e-03   p_joint 6.983333e-03

Joint ci ratio: 6.691148e-02	ci left: 7.653556e-03	ci right 8.185664e-03	k: 3404	n:430000
Cons ci ratio: 1.009022e-01	ci left: 3.321139e-03	ci right 3.676301e-03	k: 1503	n:430000
KS ci ratio: 1.188501e-02	ci left: 2.007080e-01	ci right 2.031100e-01	k: 86820	n:430000
LBP   430000 perm   153 sec   (2805 perm/sec)   p_kst 2.019070e-01   p_cons 3.495349e-03   p_joint 7.916279e-03

Joint ci ratio: 6.542369e-02	ci left: 7.828314e-03	ci right 8.360012e-03	k: 3560	n:440000
Cons ci ratio: 9.984598e-02	ci left: 3.316559e-03	ci right 3.667302e-03	k: 1535	n:440000
KS ci ratio: 1.174463e-02	ci left: 2.008463e-01	ci right 2.032213e-01	k: 88894	n:440000
LBP   440000 perm   159 sec   (2775 perm/sec)   p_kst 2.020318e-01   p_cons 3.488636e-03   p_joint 8.090909e-03

Outputting figure to mutsig2_images.part000000000095/LBP.4_1506_440000_0.20203_0.0034886_0.0080909.png
                gene_name: LBP
               theta_stop: 0.100 
                    nperm: 440000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.0035 
      ci_cons_bounds_left: 0.0033 
     ci_cons_bounds_right: 0.0037 
                  p_joint: 0.0081 
     ci_joint_bounds_left: 0.0078 
    ci_joint_bounds_right: 0.0084 

Current progress: 40 percent done.
LCE1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.056506e-01	ci left: 1.145714e-01	ci right 1.274503e-01	k: 1209	n:10000
Cons ci ratio: 2.284450e-01	ci left: 2.532660e-02	ci right 3.195180e-02	k: 285	n:10000
KS ci ratio: 2.994177e-02	ci left: 6.219580e-01	ci right 6.409654e-01	k: 6315	n:10000
LCE1B   10000 perm   1 sec   (6721 perm/sec)   p_kst 6.315000e-01   p_cons 2.850000e-02   p_joint 1.209000e-01

Joint ci ratio: 8.956675e-02	ci left: 8.347212e-02	ci right 9.134831e-02	k: 1747	n:20000
Cons ci ratio: 1.656068e-01	ci left: 2.498955e-02	ci right 2.954929e-02	k: 544	n:20000
KS ci ratio: 2.115938e-02	ci left: 6.250718e-01	ci right 6.384899e-01	k: 12636	n:20000
LCE1B   20000 perm   3 sec   (5917 perm/sec)   p_kst 6.318000e-01   p_cons 2.720000e-02   p_joint 8.735000e-02

Joint ci ratio: 6.565652e-02	ci left: 1.027024e-01	ci right 1.097074e-01	k: 3185	n:30000
Cons ci ratio: 1.340017e-01	ci left: 2.587211e-02	ci right 2.962009e-02	k: 831	n:30000
KS ci ratio: 1.727188e-02	ci left: 6.264467e-01	ci right 6.373944e-01	k: 18958	n:30000
LCE1B   30000 perm   5 sec   (5620 perm/sec)   p_kst 6.319333e-01   p_cons 2.770000e-02   p_joint 1.061667e-01

Joint ci ratio: 4.469293e-02	ci left: 1.576830e-01	ci right 1.649163e-01	k: 6451	n:40000
Cons ci ratio: 1.149527e-01	ci left: 2.662382e-02	ci right 2.989514e-02	k: 1129	n:40000
KS ci ratio: 1.497676e-02	ci left: 6.266003e-01	ci right 6.360806e-01	k: 25254	n:40000
LCE1B   40000 perm   7 sec   (5426 perm/sec)   p_kst 6.313500e-01   p_cons 2.822500e-02   p_joint 1.612750e-01

Joint ci ratio: 5.580520e-02	ci left: 8.730793e-02	ci right 9.233981e-02	k: 4490	n:50000
Cons ci ratio: 9.975184e-02	ci left: 2.846355e-02	ci right 3.147135e-02	k: 1497	n:50000
KS ci ratio: 1.350785e-02	ci left: 6.232049e-01	ci right 6.317003e-01	k: 31373	n:50000
LCE1B   50000 perm   9 sec   (5271 perm/sec)   p_kst 6.274600e-01   p_cons 2.994000e-02   p_joint 8.980000e-02

Outputting figure to mutsig2_images.part000000000095/LCE1B.4_361_50000_0.62746_0.02994_0.0898.png
                gene_name: LCE1B
               theta_stop: 0.100 
                    nperm: 50000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.030 
      ci_cons_bounds_left: 0.028 
     ci_cons_bounds_right: 0.031 
                  p_joint: 0.090 
     ci_joint_bounds_left: 0.087 
    ci_joint_bounds_right: 0.092 

Current progress: 42 percent done.
LCE2D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.384527e-02	ci left: 7.210814e-01	ci right 7.385845e-01	k: 7299	n:10000
Cons ci ratio: 5.796730e-02	ci left: 3.046112e-01	ci right 3.228974e-01	k: 3137	n:10000
KS ci ratio: 2.941651e-02	ci left: 6.302008e-01	ci right 6.491177e-01	k: 6397	n:10000
LCE2D   10000 perm   2 sec   (6645 perm/sec)   p_kst 6.397000e-01   p_cons 3.137000e-01   p_joint 7.299000e-01

Outputting figure to mutsig2_images.part000000000095/LCE2D.4_337_10000_0.6397_0.3137_0.7299.png
                gene_name: LCE2D
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 44 percent done.
LCTL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.986431e-02	ci left: 2.910276e-01	ci right 3.090890e-01	k: 3000	n:10000
Cons ci ratio: 3.001256e-02	ci left: 6.208524e-01	ci right 6.398716e-01	k: 6304	n:10000
KS ci ratio: 9.367929e-02	ci left: 1.419757e-01	ci right 1.560294e-01	k: 1489	n:10000
LCTL   10000 perm   2 sec   (5927 perm/sec)   p_kst 1.489000e-01   p_cons 6.304000e-01   p_joint 3.000000e-01

Outputting figure to mutsig2_images.part000000000095/LCTL.4_1756_10000_0.1489_0.6304_0.3.png
                gene_name: LCTL
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 46 percent done.
LAMB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.068593e-02	ci left: 2.268166e-01	ci right 2.435379e-01	k: 2351	n:10000
Cons ci ratio: 1.764788e-02	ci left: 8.240174e-01	ci right 8.387890e-01	k: 8315	n:10000
KS ci ratio: 1.532580e-01	ci left: 5.667674e-02	ci right 6.618073e-02	k: 613	n:10000
LAMB3   10000 perm   2 sec   (5355 perm/sec)   p_kst 6.130000e-02   p_cons 8.315000e-01   p_joint 2.351000e-01

Joint ci ratio: 5.310574e-02	ci left: 2.083824e-01	ci right 2.198008e-01	k: 4281	n:20000
Cons ci ratio: 1.194015e-02	ci left: 8.383897e-01	ci right 8.485102e-01	k: 16870	n:20000
KS ci ratio: 1.046962e-01	ci left: 6.206076e-02	ci right 6.896621e-02	k: 1309	n:20000
LAMB3   20000 perm   4 sec   (4828 perm/sec)   p_kst 6.545000e-02   p_cons 8.435000e-01   p_joint 2.140500e-01

Joint ci ratio: 4.581336e-02	ci left: 1.916531e-01	ci right 2.006725e-01	k: 5884	n:30000
Cons ci ratio: 1.003901e-02	ci left: 8.313568e-01	ci right 8.397781e-01	k: 25068	n:30000
KS ci ratio: 8.621468e-02	ci left: 6.168064e-02	ci right 6.727074e-02	k: 1933	n:30000
LAMB3   30000 perm   6 sec   (4624 perm/sec)   p_kst 6.443333e-02   p_cons 8.356000e-01   p_joint 1.961333e-01

Outputting figure to mutsig2_images.part000000000095/LAMB3.3_3607_30000_0.064433_0.8356_0.19613.png
                gene_name: LAMB3
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.064 
        ci_ks_bounds_left: 0.062 
       ci_ks_bounds_right: 0.067 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 48 percent done.
LAMP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.544803e-02	ci left: 4.167792e-01	ci right 4.362636e-01	k: 4265	n:10000
Cons ci ratio: 2.289722e-02	ci left: 7.369431e-01	ci right 7.541136e-01	k: 7456	n:10000
KS ci ratio: 7.812958e-02	ci left: 1.931834e-01	ci right 2.089911e-01	k: 2010	n:10000
LAMP3   10000 perm   2 sec   (6192 perm/sec)   p_kst 2.010000e-01   p_cons 7.456000e-01   p_joint 4.265000e-01

Outputting figure to mutsig2_images.part000000000095/LAMP3.3_1275_10000_0.201_0.7456_0.4265.png
                gene_name: LAMP3
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 50 percent done.
LARP1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.705912e-02	ci left: 8.334802e-01	ci right 8.479208e-01	k: 8408	n:10000
KS ci ratio: 1.412003e-02	ci left: 8.787895e-01	ci right 8.913852e-01	k: 8852	n:10000
LARP1B   10000 perm   2 sec   (5617 perm/sec)   p_kst 8.852000e-01   p_cons 8.408000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000095/LARP1B.3_2951_10000_0.8852_0.8408_1.png
                gene_name: LARP1B
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 52 percent done.
LARP7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.572208e-03	ci left: 9.391052e-01	ci right 9.482342e-01	k: 9438	n:10000
KS ci ratio: 4.391342e-03	ci left: 9.853418e-01	ci right 9.897674e-01	k: 9877	n:10000
LARP7   10000 perm   2 sec   (6116 perm/sec)   p_kst 9.877000e-01   p_cons 9.438000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000095/LARP7.3_1797_10000_0.9877_0.9438_1.png
                gene_name: LARP7
               theta_stop: 0.0096 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 54 percent done.
LARS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.342919e-02	ci left: 5.691511e-01	ci right 5.886029e-01	k: 5789	n:10000
KS ci ratio: 8.276858e-03	ci left: 9.532564e-01	ci right 9.612745e-01	k: 9574	n:10000
LARS2   10000 perm   2 sec   (5538 perm/sec)   p_kst 9.574000e-01   p_cons 5.789000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000095/LARS2.3_2792_10000_0.9574_0.5789_1.png
                gene_name: LARS2
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 56 percent done.
LATS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.715155e-02	ci left: 3.989431e-01	ci right 4.183102e-01	k: 4086	n:10000
Cons ci ratio: 1.495306e-01	ci left: 5.947341e-02	ci right 6.918228e-02	k: 642	n:10000
KS ci ratio: 1.737651e-02	ci left: 8.283916e-01	ci right 8.430123e-01	k: 8358	n:10000
LATS1   10000 perm   2 sec   (5318 perm/sec)   p_kst 8.358000e-01   p_cons 6.420000e-02   p_joint 4.086000e-01

Joint ci ratio: 3.344455e-02	ci left: 4.003299e-01	ci right 4.139971e-01	k: 8143	n:20000
Cons ci ratio: 1.043556e-01	ci left: 6.245098e-02	ci right 6.937587e-02	k: 1317	n:20000
KS ci ratio: 1.196726e-02	ci left: 8.377820e-01	ci right 8.479181e-01	k: 16858	n:20000
LATS1   20000 perm   4 sec   (4777 perm/sec)   p_kst 8.429000e-01   p_cons 6.585000e-02   p_joint 4.071500e-01

Joint ci ratio: 2.369862e-02	ci left: 4.713005e-01	ci right 4.826373e-01	k: 14309	n:30000
Cons ci ratio: 8.585932e-02	ci left: 6.217058e-02	ci right 6.778070e-02	k: 1948	n:30000
KS ci ratio: 9.796859e-03	ci left: 8.380250e-01	ci right 8.463086e-01	k: 25266	n:30000
LATS1   30000 perm   7 sec   (4564 perm/sec)   p_kst 8.422000e-01   p_cons 6.493333e-02   p_joint 4.769667e-01

Outputting figure to mutsig2_images.part000000000095/LATS1.3_3421_30000_0.8422_0.064933_0.47697.png
                gene_name: LATS1
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.065 
      ci_cons_bounds_left: 0.062 
     ci_cons_bounds_right: 0.068 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.48 

Current progress: 58 percent done.
LAX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.332111e-02	ci left: 4.403148e-01	ci right 4.599142e-01	k: 4501	n:10000
Cons ci ratio: 3.287024e-02	ci left: 5.773758e-01	ci right 5.967734e-01	k: 5871	n:10000
KS ci ratio: 6.337758e-02	ci left: 2.678488e-01	ci right 2.854815e-01	k: 2766	n:10000
LAX1   10000 perm   2 sec   (6103 perm/sec)   p_kst 2.766000e-01   p_cons 5.871000e-01   p_joint 4.501000e-01

Outputting figure to mutsig2_images.part000000000095/LAX1.3_1262_10000_0.2766_0.5871_0.4501.png
                gene_name: LAX1
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 60 percent done.
LBXCOR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.386991e-02	ci left: 3.367719e-01	ci right 3.555178e-01	k: 3461	n:10000
Cons ci ratio: 1.027723e-01	ci left: 1.204354e-01	ci right 1.335827e-01	k: 1269	n:10000
KS ci ratio: 1.483936e-02	ci left: 8.680521e-01	ci right 8.811288e-01	k: 8747	n:10000
LBXCOR1   10000 perm   2 sec   (5930 perm/sec)   p_kst 8.747000e-01   p_cons 1.269000e-01   p_joint 3.461000e-01

Joint ci ratio: 3.445949e-02	ci left: 3.860226e-01	ci right 3.996086e-01	k: 7856	n:20000
Cons ci ratio: 7.239501e-02	ci left: 1.232023e-01	ci right 1.325062e-01	k: 2556	n:20000
KS ci ratio: 1.058511e-02	ci left: 8.680522e-01	ci right 8.773391e-01	k: 17455	n:20000
LBXCOR1   20000 perm   4 sec   (5250 perm/sec)   p_kst 8.727500e-01   p_cons 1.278000e-01   p_joint 3.928000e-01

Outputting figure to mutsig2_images.part000000000095/LBXCOR1.3_2806_20000_0.87275_0.1278_0.3928.png
                gene_name: LBXCOR1
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.40 

Current progress: 62 percent done.
LCK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.796719e-02	ci left: 5.060517e-01	ci right 5.257390e-01	k: 5159	n:10000
Cons ci ratio: 6.152973e-02	ci left: 2.797318e-01	ci right 2.975915e-01	k: 2886	n:10000
KS ci ratio: 4.392995e-02	ci left: 4.334314e-01	ci right 4.530017e-01	k: 4432	n:10000
LCK   10000 perm   2 sec   (5977 perm/sec)   p_kst 4.432000e-01   p_cons 2.886000e-01   p_joint 5.159000e-01

Outputting figure to mutsig2_images.part000000000095/LCK.3_1578_10000_0.4432_0.2886_0.5159.png
                gene_name: LCK
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 64 percent done.
LCN8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.635020e-02	ci left: 5.277682e-01	ci right 5.474099e-01	k: 5376	n:10000
Cons ci ratio: 6.656394e-02	ci left: 2.488526e-01	ci right 2.660889e-01	k: 2574	n:10000
KS ci ratio: 2.945480e-02	ci left: 6.295976e-01	ci right 6.485213e-01	k: 6391	n:10000
LCN8   10000 perm   2 sec   (6580 perm/sec)   p_kst 6.391000e-01   p_cons 2.574000e-01   p_joint 5.376000e-01

Outputting figure to mutsig2_images.part000000000095/LCN8.3_487_10000_0.6391_0.2574_0.5376.png
                gene_name: LCN8
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 66 percent done.
LANCL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.814967e-02	ci left: 2.400544e-01	ci right 2.570923e-01	k: 2485	n:10000
Cons ci ratio: 2.354916e-02	ci left: 7.260304e-01	ci right 7.434327e-01	k: 7348	n:10000
KS ci ratio: 1.631092e-01	ci left: 5.013112e-02	ci right 5.913054e-02	k: 545	n:10000
LANCL2   10000 perm   2 sec   (6602 perm/sec)   p_kst 5.450000e-02   p_cons 7.348000e-01   p_joint 2.485000e-01

Joint ci ratio: 4.762858e-02	ci left: 2.469367e-01	ci right 2.590352e-01	k: 5059	n:20000
Cons ci ratio: 1.665415e-02	ci left: 7.285729e-01	ci right 7.408588e-01	k: 14695	n:20000
KS ci ratio: 1.167586e-01	ci left: 5.022695e-02	ci right 5.650370e-02	k: 1066	n:20000
LANCL2   20000 perm   3 sec   (5815 perm/sec)   p_kst 5.330000e-02   p_cons 7.347500e-01   p_joint 2.529500e-01

Joint ci ratio: 3.702895e-02	ci left: 2.669039e-01	ci right 2.770070e-01	k: 8158	n:30000
Cons ci ratio: 1.312815e-02	ci left: 7.432814e-01	ci right 7.531372e-01	k: 22447	n:30000
KS ci ratio: 9.569744e-02	ci left: 5.042643e-02	ci right 5.552724e-02	k: 1588	n:30000
LANCL2   30000 perm   5 sec   (5493 perm/sec)   p_kst 5.293333e-02   p_cons 7.482333e-01   p_joint 2.719333e-01

Outputting figure to mutsig2_images.part000000000095/LANCL2.2_1389_30000_0.052933_0.74823_0.27193.png
                gene_name: LANCL2
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.053 
        ci_ks_bounds_left: 0.050 
       ci_ks_bounds_right: 0.056 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 68 percent done.
LAPTM4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.952407e-02	ci left: 2.934065e-01	ci right 3.115087e-01	k: 3024	n:10000
Cons ci ratio: 1.059497e-01	ci left: 1.139852e-01	ci right 1.268368e-01	k: 1203	n:10000
KS ci ratio: 1.187538e-02	ci left: 9.103913e-01	ci right 9.213650e-01	k: 9160	n:10000
LAPTM4B   10000 perm   1 sec   (6725 perm/sec)   p_kst 9.160000e-01   p_cons 1.203000e-01   p_joint 3.024000e-01

Joint ci ratio: 1.848534e-02	ci left: 6.857000e-01	ci right 6.985441e-01	k: 13843	n:20000
Cons ci ratio: 7.545444e-02	ci left: 1.143957e-01	ci right 1.234154e-01	k: 2377	n:20000
KS ci ratio: 8.357297e-03	ci left: 9.127844e-01	ci right 9.204940e-01	k: 18334	n:20000
LAPTM4B   20000 perm   3 sec   (5829 perm/sec)   p_kst 9.167000e-01   p_cons 1.188500e-01   p_joint 6.921500e-01

Outputting figure to mutsig2_images.part000000000095/LAPTM4B.2_982_20000_0.9167_0.11885_0.69215.png
                gene_name: LAPTM4B
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.70 

Current progress: 70 percent done.
LASS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.917731e-02	ci left: 7.990245e-01	ci right 8.145964e-01	k: 8069	n:10000
KS ci ratio: 3.834130e-02	ci left: 5.011505e-01	ci right 5.208430e-01	k: 5110	n:10000
LASS2   10000 perm   2 sec   (6612 perm/sec)   p_kst 5.110000e-01   p_cons 8.069000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000095/LASS2.2_1183_10000_0.511_0.8069_1.png
                gene_name: LASS2
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
LASS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.273648e-03	ci left: 9.630998e-01	ci right 9.702249e-01	k: 9668	n:10000
Cons ci ratio: 7.346716e-02	ci left: 2.133931e-01	ci right 2.297694e-01	k: 2215	n:10000
KS ci ratio: 3.511784e-02	ci left: 5.448942e-01	ci right 5.644739e-01	k: 5547	n:10000
LASS3   10000 perm   2 sec   (5831 perm/sec)   p_kst 5.547000e-01   p_cons 2.215000e-01   p_joint 9.668000e-01

Outputting figure to mutsig2_images.part000000000095/LASS3.2_1192_10000_0.5547_0.2215_0.9668.png
                gene_name: LASS3
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 74 percent done.
LASS4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.098745e-02	ci left: 3.619185e-01	ci right 3.809565e-01	k: 3714	n:10000
Cons ci ratio: 6.393634e-02	ci left: 2.643844e-01	ci right 2.819479e-01	k: 2731	n:10000
KS ci ratio: 2.275242e-02	ci left: 7.393691e-01	ci right 7.564862e-01	k: 7480	n:10000
LASS4   10000 perm   2 sec   (6428 perm/sec)   p_kst 7.480000e-01   p_cons 2.731000e-01   p_joint 3.714000e-01

Outputting figure to mutsig2_images.part000000000095/LASS4.2_1225_10000_0.748_0.2731_0.3714.png
                gene_name: LASS4
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 76 percent done.
LATS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.356182e-01	ci left: 7.184865e-02	ci right 8.239926e-02	k: 770	n:10000
Cons ci ratio: 6.030900e-02	ci left: 2.879553e-01	ci right 3.059631e-01	k: 2969	n:10000
KS ci ratio: 2.801592e-01	ci left: 1.650803e-02	ci right 2.197711e-02	k: 191	n:10000
LATS2   10000 perm   2 sec   (5412 perm/sec)   p_kst 1.910000e-02   p_cons 2.969000e-01   p_joint 7.700000e-02

Joint ci ratio: 1.957807e-01	ci left: 1.772392e-02	ci right 2.161749e-02	k: 392	n:20000
Cons ci ratio: 4.272178e-02	ci left: 2.898772e-01	ci right 3.025821e-01	k: 5924	n:20000
KS ci ratio: 1.957807e-01	ci left: 1.772392e-02	ci right 2.161749e-02	k: 392	n:20000
LATS2   20000 perm   4 sec   (4795 perm/sec)   p_kst 1.960000e-02   p_cons 2.962000e-01   p_joint 1.960000e-02

Joint ci ratio: 1.611854e-01	ci left: 1.777321e-02	ci right 2.092085e-02	k: 579	n:30000
Cons ci ratio: 3.500672e-02	ci left: 2.895776e-01	ci right 2.999289e-01	k: 8842	n:30000
KS ci ratio: 1.611854e-01	ci left: 1.777321e-02	ci right 2.092085e-02	k: 579	n:30000
LATS2   30000 perm   6 sec   (4642 perm/sec)   p_kst 1.930000e-02   p_cons 2.947333e-01   p_joint 1.930000e-02

Joint ci ratio: 1.404580e-01	ci left: 1.775699e-02	ci right 2.046346e-02	k: 763	n:40000
Cons ci ratio: 3.018720e-02	ci left: 2.920516e-01	ci right 3.010280e-01	k: 11861	n:40000
KS ci ratio: 1.404580e-01	ci left: 1.775699e-02	ci right 2.046346e-02	k: 763	n:40000
LATS2   40000 perm   9 sec   (4517 perm/sec)   p_kst 1.907500e-02   p_cons 2.965250e-01   p_joint 1.907500e-02

Joint ci ratio: 1.662921e-02	ci left: 5.219721e-01	ci right 5.307449e-01	k: 26318	n:50000
Cons ci ratio: 2.699315e-02	ci left: 2.926381e-01	ci right 3.006655e-01	k: 14832	n:50000
KS ci ratio: 1.256298e-01	ci left: 1.789884e-02	ci right 2.031744e-02	k: 954	n:50000
LATS2   50000 perm   11 sec   (4428 perm/sec)   p_kst 1.908000e-02   p_cons 2.966400e-01   p_joint 5.263600e-01

Joint ci ratio: 1.912960e-02	ci left: 4.077581e-01	ci right 4.156504e-01	k: 24702	n:60000
Cons ci ratio: 2.468622e-02	ci left: 2.922327e-01	ci right 2.995537e-01	k: 17753	n:60000
KS ci ratio: 1.162979e-01	ci left: 1.750155e-02	ci right 1.967870e-02	k: 1114	n:60000
LATS2   60000 perm   14 sec   (4341 perm/sec)   p_kst 1.856667e-02   p_cons 2.958833e-01   p_joint 4.117000e-01

Joint ci ratio: 1.292141e-02	ci left: 5.643062e-01	ci right 5.716596e-01	k: 39759	n:70000
Cons ci ratio: 2.293045e-02	ci left: 2.911390e-01	ci right 2.979066e-01	k: 20616	n:70000
KS ci ratio: 1.084739e-01	ci left: 1.731994e-02	ci right 1.932027e-02	k: 1281	n:70000
LATS2   70000 perm   16 sec   (4261 perm/sec)   p_kst 1.830000e-02   p_cons 2.945143e-01   p_joint 5.679857e-01

Joint ci ratio: 1.297297e-02	ci left: 5.295229e-01	ci right 5.364497e-01	k: 42639	n:80000
Cons ci ratio: 2.145676e-02	ci left: 2.912180e-01	ci right 2.975469e-01	k: 23550	n:80000
KS ci ratio: 1.017921e-01	ci left: 1.727277e-02	ci right 1.913740e-02	k: 1455	n:80000
LATS2   80000 perm   19 sec   (4189 perm/sec)   p_kst 1.818750e-02   p_cons 2.943750e-01   p_joint 5.329875e-01

Joint ci ratio: 1.223184e-02	ci left: 5.296895e-01	ci right 5.362195e-01	k: 47966	n:90000
Cons ci ratio: 2.022739e-02	ci left: 2.914456e-01	ci right 2.974121e-01	k: 26498	n:90000
KS ci ratio: 9.549666e-02	ci left: 1.749942e-02	ci right 1.926515e-02	k: 1653	n:90000
LATS2   90000 perm   22 sec   (4120 perm/sec)   p_kst 1.836667e-02   p_cons 2.944222e-01   p_joint 5.329556e-01

Outputting figure to mutsig2_images.part000000000095/LATS2.2_3295_90000_0.018367_0.29442_0.53296.png
                gene_name: LATS2
               theta_stop: 0.095 
                    nperm: 90000 
                     p_ks: 0.018 
        ci_ks_bounds_left: 0.017 
       ci_ks_bounds_right: 0.019 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.54 

Current progress: 78 percent done.
LBR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.711799e-02	ci left: 6.670292e-01	ci right 6.854680e-01	k: 6763	n:10000
Cons ci ratio: 1.664198e-03	ci left: 9.972795e-01	ci right 9.990094e-01	k: 9983	n:10000
KS ci ratio: 6.163475e-02	ci left: 2.790384e-01	ci right 2.968853e-01	k: 2879	n:10000
LBR   10000 perm   2 sec   (6332 perm/sec)   p_kst 2.879000e-01   p_cons 9.983000e-01   p_joint 6.763000e-01

Outputting figure to mutsig2_images.part000000000095/LBR.2_1900_10000_0.2879_0.9983_0.6763.png
                gene_name: LBR
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 80 percent done.
LCE1C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.159811e-02	ci left: 5.964436e-01	ci right 6.156946e-01	k: 6061	n:10000
KS ci ratio: 7.483523e-02	ci left: 2.071791e-01	ci right 2.233870e-01	k: 2152	n:10000
LCE1C   10000 perm   1 sec   (7145 perm/sec)   p_kst 2.152000e-01   p_cons 6.061000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000095/LCE1C.2_361_10000_0.2152_0.6061_1.png
                gene_name: LCE1C
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
LCE2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.637447e-02	ci left: 2.004751e-01	ci right 2.164950e-01	k: 2084	n:10000
Cons ci ratio: 1.103187e-01	ci left: 1.058826e-01	ci right 1.183444e-01	k: 1120	n:10000
KS ci ratio: 3.648198e-02	ci left: 5.259661e-01	ci right 5.456130e-01	k: 5358	n:10000
LCE2B   10000 perm   1 sec   (7269 perm/sec)   p_kst 5.358000e-01   p_cons 1.120000e-01   p_joint 2.084000e-01

Joint ci ratio: 5.499856e-02	ci left: 1.969491e-01	ci right 2.081375e-01	k: 4050	n:20000
Cons ci ratio: 1.061339e-01	ci left: 6.045150e-02	ci right 6.727598e-02	k: 1276	n:20000
KS ci ratio: 2.593614e-02	ci left: 5.262063e-01	ci right 5.400840e-01	k: 10663	n:20000
LCE2B   20000 perm   3 sec   (6350 perm/sec)   p_kst 5.331500e-01   p_cons 6.380000e-02   p_joint 2.025000e-01

Joint ci ratio: 4.459136e-02	ci left: 2.002455e-01	ci right 2.094117e-01	k: 6144	n:30000
Cons ci ratio: 8.600098e-02	ci left: 6.197460e-02	ci right 6.757672e-02	k: 1942	n:30000
KS ci ratio: 2.132303e-02	ci left: 5.240661e-01	ci right 5.353948e-01	k: 15892	n:30000
LCE2B   30000 perm   5 sec   (6013 perm/sec)   p_kst 5.297333e-01   p_cons 6.473333e-02   p_joint 2.048000e-01

Outputting figure to mutsig2_images.part000000000095/LCE2B.2_337_30000_0.52973_0.064733_0.2048.png
                gene_name: LCE2B
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.065 
      ci_cons_bounds_left: 0.062 
     ci_cons_bounds_right: 0.068 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 84 percent done.
LCE3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.204093e-02	ci left: 3.524727e-01	ci right 3.714078e-01	k: 3619	n:10000
Cons ci ratio: 2.462640e-02	ci left: 7.080589e-01	ci right 7.258146e-01	k: 7170	n:10000
KS ci ratio: 7.728861e-02	ci left: 1.966317e-01	ci right 2.125408e-01	k: 2045	n:10000
LCE3A   10000 perm   1 sec   (6942 perm/sec)   p_kst 2.045000e-01   p_cons 7.170000e-01   p_joint 3.619000e-01

Outputting figure to mutsig2_images.part000000000095/LCE3A.2_273_10000_0.2045_0.717_0.3619.png
                gene_name: LCE3A
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 86 percent done.
LCE3E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.032345e-02	ci left: 2.878562e-01	ci right 3.058623e-01	k: 2968	n:10000
Cons ci ratio: 1.377594e-01	ci left: 6.971834e-02	ci right 8.013090e-02	k: 748	n:10000
KS ci ratio: 3.381460e-02	ci left: 5.635359e-01	ci right 5.830214e-01	k: 5733	n:10000
LCE3E   10000 perm   1 sec   (7254 perm/sec)   p_kst 5.733000e-01   p_cons 7.480000e-02   p_joint 2.968000e-01

Joint ci ratio: 4.115631e-02	ci left: 3.055817e-01	ci right 3.184730e-01	k: 6240	n:20000
Cons ci ratio: 9.633930e-02	ci left: 7.275530e-02	ci right 8.016840e-02	k: 1528	n:20000
KS ci ratio: 2.409327e-02	ci left: 5.627032e-01	ci right 5.764765e-01	k: 11392	n:20000
LCE3E   20000 perm   3 sec   (6358 perm/sec)   p_kst 5.696000e-01   p_cons 7.640000e-02   p_joint 3.120000e-01

Outputting figure to mutsig2_images.part000000000095/LCE3E.2_283_20000_0.5696_0.0764_0.312.png
                gene_name: LCE3E
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.076 
      ci_cons_bounds_left: 0.073 
     ci_cons_bounds_right: 0.080 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 88 percent done.
LCE4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.210775e-03	ci left: 9.723839e-01	ci right 9.785348e-01	k: 9756	n:10000
KS ci ratio: 4.844356e-02	ci left: 3.859978e-01	ci right 4.052631e-01	k: 3956	n:10000
LCE4A   10000 perm   1 sec   (6950 perm/sec)   p_kst 3.956000e-01   p_cons 9.756000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000095/LCE4A.2_304_10000_0.3956_0.9756_1.png
                gene_name: LCE4A
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
LCLAT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.981969e-02	ci left: 6.238676e-01	ci right 6.428546e-01	k: 6334	n:10000
KS ci ratio: 5.279280e-02	ci left: 3.459128e-01	ci right 3.647715e-01	k: 3553	n:10000
LCLAT1   10000 perm   1 sec   (6675 perm/sec)   p_kst 3.553000e-01   p_cons 6.334000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000095/LCLAT1.2_1269_10000_0.3553_0.6334_1.png
                gene_name: LCLAT1
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
LCMT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.885064e-02	ci left: 8.044048e-01	ci right 8.198129e-01	k: 8122	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
LCMT1   10000 perm   2 sec   (6628 perm/sec)   p_kst 1   p_cons 8.122000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000095/LCMT1.2_1049_10000_1_0.8122_1.png
                gene_name: LCMT1
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
LCMT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.504931e-02	ci left: 2.576556e-01	ci right 2.750807e-01	k: 2663	n:10000
Cons ci ratio: 5.280433e-02	ci left: 3.458134e-01	ci right 3.646710e-01	k: 3552	n:10000
KS ci ratio: 5.346779e-02	ci left: 3.401496e-01	ci right 3.589381e-01	k: 3495	n:10000
LCMT2   10000 perm   2 sec   (6365 perm/sec)   p_kst 3.495000e-01   p_cons 3.552000e-01   p_joint 2.663000e-01

Outputting figure to mutsig2_images.part000000000095/LCMT2.2_2065_10000_0.3495_0.3552_0.2663.png
                gene_name: LCMT2
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 96 percent done.
LCN6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.127305e-02	ci left: 7.641548e-01	ci right 7.806862e-01	k: 7725	n:10000
Cons ci ratio: 8.030831e-03	ci left: 9.557639e-01	ci right 9.635655e-01	k: 9598	n:10000
KS ci ratio: 2.895871e-02	ci left: 6.374410e-01	ci right 6.562734e-01	k: 6469	n:10000
LCN6   10000 perm   1 sec   (7038 perm/sec)   p_kst 6.469000e-01   p_cons 9.598000e-01   p_joint 7.725000e-01

Outputting figure to mutsig2_images.part000000000095/LCN6.2_512_10000_0.6469_0.9598_0.7725.png
                gene_name: LCN6
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 98 percent done.
LCP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.941142e-02	ci left: 2.941996e-01	ci right 3.123152e-01	k: 3032	n:10000
Cons ci ratio: 8.869635e-02	ci left: 1.561040e-01	ci right 1.706926e-01	k: 1633	n:10000
KS ci ratio: 2.124280e-02	ci left: 7.646610e-01	ci right 7.811797e-01	k: 7730	n:10000
LCP2   10000 perm   2 sec   (6364 perm/sec)   p_kst 7.730000e-01   p_cons 1.633000e-01   p_joint 3.032000e-01

Outputting figure to mutsig2_images.part000000000095/LCP2.2_1686_10000_0.773_0.1633_0.3032.png
                gene_name: LCP2
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000095
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 95 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1701>
Subject: Job 8004221: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1701>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000096> was used as the working directory.
Started at Sun Nov 11 15:07:38 2012
Results reported at Sun Nov 11 15:14:59 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000096.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000096.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 96  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000096.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    472.14 sec.
    Max Memory :      4670 MB
    Max Swap   :      7248 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
96
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 96
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 96: processing genes 8596 - 8685
Calculating significance of each gene.
Using projection method.
8596	LDHA	1
8597	LDHAL6A	2.011592e-01
8598	LDHAL6B	7.891417e-01
8599	LDHB	1
8600	LDHC	1.373224e-01
8601	LDHD	1.136352e-01
8602	LDLR	5.744457e-01
8603	LDLRAD1	1
8604	LDLRAD2	4.306292e-01
8605	LDLRAD3	1
8606	LDLRAP1	1
8607	LDOC1	4.034776e-01
8608	LDOC1L	5.611845e-01
8609	LEAP2	1
8610	LECT1	4.533142e-01
8611	LECT2	1
8612	LEF1	1.770195e-01
8613	LEFTY1	1
8614	LEFTY2	1.587214e-01
8615	LEKR1	1
8616	LELP1	4.730866e-02
8617	LEMD1	1
8618	LEMD2	5.247778e-01
8619	LEMD3	6.332274e-01
8620	LENEP	3.238460e-02
8621	LENG1	1
8622	LENG8	3.510028e-01
8623	LENG9	5.908482e-01
8624	LEO1	8.909316e-01
8625	LEP	1
8626	LEPR	6.324065e-03
8627	LEPRE1	8.875282e-01
8628	LEPREL1	2.399629e-01
8629	LEPREL2	7.207173e-01
8630	LEPROT	5.727677e-04
8631	LEPROTL1	1
8632	LETM1	8.796973e-01
8633	LETM2	3.852120e-01
8634	LETMD1	1
8635	LFNG	5.635793e-01
8636	LGALS1	1.555557e-01
8637	LGALS12	2.667383e-02
8638	LGALS13	1
8639	LGALS14	2.921230e-01
8640	LGALS2	1
8641	LGALS3	1
8642	LGALS3BP	8.300020e-01
8643	LGALS4	4.869387e-01
8644	LGALS7	1
8645	LGALS7B	1
8646	LGALS8	7.816833e-01
8647	LGALS9	8.220992e-01
8648	LGALS9B	1
8649	LGALS9C	7.043028e-01
8650	LGI1	7.187445e-01
8651	LGI2	2.216718e-01
8652	LGI3	6.772184e-01
8653	LGI4	5.819547e-02
8654	LGMN	1
8655	LGR4	9.212852e-01
8656	LGR5	5.880837e-01
8657	LGR6	9.507912e-01
8658	LGSN	2.205053e-01
8659	LGTN	8.432882e-01
8660	LHB	3.809269e-01
8661	LHCGR	8.045590e-01
8662	LHFP	5.898473e-01
8663	LHFPL1	1.734796e-01
8664	LHFPL2	5.811355e-01
8665	LHFPL3	1.524480e-01
8666	LHFPL4	1
8667	LHFPL5	4.924759e-01
8668	LHPP	1
8669	LHX1	1
8670	LHX2	4.833195e-01
8671	LHX3	7.710231e-01
8672	LHX4	6.970522e-01
8673	LHX5	1
8674	LHX6	1
8675	LHX8	3.100449e-03
8676	LHX9	1.461608e-01
8677	LIAS	1
8678	LIF	1
8679	LIFR	7.037417e-01
8680	LIG1	1.696390e-01
8681	LIG3	7.765890e-01
8682	LIG4	9.106008e-01
8683	LILRA1	4.265001e-02
8684	LILRA2	7.296760e-01
8685	LILRA3	7.607660e-01
Done

Running MutSig 2:
Scatter job 96: processing genes 8596 - 8685
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
LEPR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.608669e-02	ci left: 8.488632e-01	ci right 8.627288e-01	k: 8559	n:10000
Cons ci ratio: 1.045991e-02	ci left: 9.285426e-01	ci right 9.384031e-01	k: 9336	n:10000
KS ci ratio: 2.371833e-02	ci left: 7.232022e-01	ci right 7.406625e-01	k: 7320	n:10000
LEPR   10000 perm   2 sec   (4173 perm/sec)   p_kst 7.320000e-01   p_cons 9.336000e-01   p_joint 8.559000e-01

Outputting figure to mutsig2_images.part000000000096/LEPR.15_3800_10000_0.732_0.9336_0.8559.png
                gene_name: LEPR
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 2 percent done.
LILRA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.445889e-02	ci left: 4.275470e-01	ci right 4.470895e-01	k: 4373	n:10000
KS ci ratio: 2.726672e-02	ci left: 6.646124e-01	ci right 6.830863e-01	k: 6739	n:10000
LILRA2   10000 perm   3 sec   (3654 perm/sec)   p_kst 6.739000e-01   p_cons 4.373000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000096/LILRA2.11_1484_10000_0.6739_0.4373_1.png
                gene_name: LILRA2
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 5 percent done.
LHCGR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.276977e-02	ci left: 3.461116e-01	ci right 3.649727e-01	k: 3555	n:10000
Cons ci ratio: 2.672253e-02	ci left: 6.734756e-01	ci right 6.918179e-01	k: 6827	n:10000
KS ci ratio: 1.124191e-01	ci left: 1.022739e-01	ci right 1.145552e-01	k: 1083	n:10000
LHCGR   10000 perm   2 sec   (4864 perm/sec)   p_kst 1.083000e-01   p_cons 6.827000e-01   p_joint 3.555000e-01

Joint ci ratio: 4.900279e-02	ci left: 2.364241e-01	ci right 2.483509e-01	k: 4847	n:20000
Cons ci ratio: 1.860253e-02	ci left: 6.829850e-01	ci right 6.958599e-01	k: 13789	n:20000
KS ci ratio: 7.781324e-02	ci left: 1.082015e-01	ci right 1.170115e-01	k: 2251	n:20000
LHCGR   20000 perm   5 sec   (4314 perm/sec)   p_kst 1.125500e-01   p_cons 6.894500e-01   p_joint 2.423500e-01

Outputting figure to mutsig2_images.part000000000096/LHCGR.9_2144_20000_0.11255_0.68945_0.24235.png
                gene_name: LHCGR
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 7 percent done.
LIG4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.286200e-02	ci left: 3.453165e-01	ci right 3.641682e-01	k: 3547	n:10000
Cons ci ratio: 1.269027e-01	ci left: 8.154699e-02	ci right 9.269490e-02	k: 870	n:10000
KS ci ratio: 6.856483e-03	ci left: 9.668882e-01	ci right 9.736342e-01	k: 9704	n:10000
LIG4   10000 perm   2 sec   (4867 perm/sec)   p_kst 9.704000e-01   p_cons 8.700000e-02   p_joint 3.547000e-01

Joint ci ratio: 4.054605e-02	ci left: 3.119952e-01	ci right 3.249576e-01	k: 6369	n:20000
Cons ci ratio: 9.070869e-02	ci left: 8.151323e-02	ci right 8.930779e-02	k: 1707	n:20000
KS ci ratio: 4.712578e-03	ci left: 9.695669e-01	ci right 9.741945e-01	k: 19439	n:20000
LIG4   20000 perm   5 sec   (4375 perm/sec)   p_kst 9.719500e-01   p_cons 8.535000e-02   p_joint 3.184500e-01

Outputting figure to mutsig2_images.part000000000096/LIG4.8_2740_20000_0.97195_0.08535_0.31845.png
                gene_name: LIG4
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.085 
      ci_cons_bounds_left: 0.082 
     ci_cons_bounds_right: 0.089 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 10 percent done.
LGSN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.334593e-02	ci left: 2.680468e-01	ci right 2.856834e-01	k: 2768	n:10000
Cons ci ratio: 4.164532e-02	ci left: 4.598782e-01	ci right 4.795394e-01	k: 4697	n:10000
KS ci ratio: 8.397822e-02	ci left: 1.713341e-01	ci right 1.864535e-01	k: 1788	n:10000
LGSN   10000 perm   2 sec   (5364 perm/sec)   p_kst 1.788000e-01   p_cons 4.697000e-01   p_joint 2.768000e-01

Outputting figure to mutsig2_images.part000000000096/LGSN.7_1546_10000_0.1788_0.4697_0.2768.png
                gene_name: LGSN
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 12 percent done.
LIG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.413391e-02	ci left: 8.785849e-01	ci right 8.911899e-01	k: 8850	n:10000
Cons ci ratio: 2.935274e-02	ci left: 6.312063e-01	ci right 6.501117e-01	k: 6407	n:10000
KS ci ratio: 1.627524e-02	ci left: 8.459069e-01	ci right 8.598868e-01	k: 8530	n:10000
LIG1   10000 perm   2 sec   (5052 perm/sec)   p_kst 8.530000e-01   p_cons 6.407000e-01   p_joint 8.850000e-01

Outputting figure to mutsig2_images.part000000000096/LIG1.7_2868_10000_0.853_0.6407_0.885.png
                gene_name: LIG1
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 14 percent done.
LDHD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.752138e-02	ci left: 6.604841e-01	ci right 6.790169e-01	k: 6698	n:10000
KS ci ratio: 6.119212e-03	ci left: 9.731262e-01	ci right 9.791920e-01	k: 9763	n:10000
LDHD   10000 perm   2 sec   (5537 perm/sec)   p_kst 9.763000e-01   p_cons 6.698000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000096/LDHD.6_1568_10000_0.9763_0.6698_1.png
                gene_name: LDHD
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 17 percent done.
LHX8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.277544e-02	ci left: 5.787803e-01	ci right 5.981681e-01	k: 5885	n:10000
Cons ci ratio: 5.295449e-02	ci left: 3.445215e-01	ci right 3.633636e-01	k: 3539	n:10000
KS ci ratio: 4.326865e-02	ci left: 4.409135e-01	ci right 4.605152e-01	k: 4507	n:10000
LHX8   10000 perm   2 sec   (5834 perm/sec)   p_kst 4.507000e-01   p_cons 3.539000e-01   p_joint 5.885000e-01

Outputting figure to mutsig2_images.part000000000096/LHX8.6_1107_10000_0.4507_0.3539_0.5885.png
                gene_name: LHX8
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 19 percent done.
LILRA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.972923e-02	ci left: 7.898932e-01	ci right 8.057329e-01	k: 7979	n:10000
Cons ci ratio: 6.807679e-02	ci left: 2.404497e-01	ci right 2.574968e-01	k: 2489	n:10000
KS ci ratio: 2.396016e-02	ci left: 7.191628e-01	ci right 7.367042e-01	k: 7280	n:10000
LILRA1   10000 perm   2 sec   (5215 perm/sec)   p_kst 7.280000e-01   p_cons 2.489000e-01   p_joint 7.979000e-01

Outputting figure to mutsig2_images.part000000000096/LILRA1.5_1506_10000_0.728_0.2489_0.7979.png
                gene_name: LILRA1
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 21 percent done.
LDLR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.528310e-02	ci left: 2.562705e-01	ci right 2.736666e-01	k: 2649	n:10000
Cons ci ratio: 1.349556e-01	ci left: 7.252675e-02	ci right 8.312075e-02	k: 777	n:10000
KS ci ratio: 2.847238e-02	ci left: 6.451864e-01	ci right 6.639235e-01	k: 6546	n:10000
LDLR   10000 perm   2 sec   (5880 perm/sec)   p_kst 6.546000e-01   p_cons 7.770000e-02   p_joint 2.649000e-01

Joint ci ratio: 4.221000e-02	ci left: 2.948957e-01	ci right 3.076621e-01	k: 6025	n:20000
Cons ci ratio: 9.234391e-02	ci left: 7.882080e-02	ci right 8.650104e-02	k: 1652	n:20000
KS ci ratio: 2.022072e-02	ci left: 6.460045e-01	ci right 6.592511e-01	k: 13053	n:20000
LDLR   20000 perm   4 sec   (5179 perm/sec)   p_kst 6.526500e-01   p_cons 8.260000e-02   p_joint 3.012500e-01

Outputting figure to mutsig2_images.part000000000096/LDLR.4_2655_20000_0.65265_0.0826_0.30125.png
                gene_name: LDLR
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.083 
      ci_cons_bounds_left: 0.079 
     ci_cons_bounds_right: 0.087 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 24 percent done.
LENG8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.834897e-02	ci left: 5.010505e-01	ci right 5.207431e-01	k: 5109	n:10000
Cons ci ratio: 7.752686e-02	ci left: 1.956464e-01	ci right 2.115267e-01	k: 2035	n:10000
KS ci ratio: 1.289569e-02	ci left: 8.964156e-01	ci right 9.081488e-01	k: 9024	n:10000
LENG8   10000 perm   2 sec   (5377 perm/sec)   p_kst 9.024000e-01   p_cons 2.035000e-01   p_joint 5.109000e-01

Outputting figure to mutsig2_images.part000000000096/LENG8.4_2463_10000_0.9024_0.2035_0.5109.png
                gene_name: LENG8
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 26 percent done.
LEPREL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.873843e-02	ci left: 2.368921e-01	ci right 2.538565e-01	k: 2453	n:10000
Cons ci ratio: 2.791418e-02	ci left: 6.541423e-01	ci right 6.727624e-01	k: 6635	n:10000
KS ci ratio: 1.135382e-01	ci left: 1.004217e-01	ci right 1.126086e-01	k: 1064	n:10000
LEPREL1   10000 perm   2 sec   (5834 perm/sec)   p_kst 1.064000e-01   p_cons 6.635000e-01   p_joint 2.453000e-01

Joint ci ratio: 5.227558e-02	ci left: 2.136807e-01	ci right 2.252010e-01	k: 4388	n:20000
Cons ci ratio: 1.975232e-02	ci left: 6.566016e-01	ci right 6.697509e-01	k: 13264	n:20000
KS ci ratio: 8.222091e-02	ci left: 9.783865e-02	ci right 1.062774e-01	k: 2040	n:20000
LEPREL1   20000 perm   4 sec   (5100 perm/sec)   p_kst 1.020000e-01   p_cons 6.632000e-01   p_joint 2.194000e-01

Outputting figure to mutsig2_images.part000000000096/LEPREL1.4_2187_20000_0.102_0.6632_0.2194.png
                gene_name: LEPREL1
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.098 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 29 percent done.
LEPROT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.509149e-01	ci left: 5.841227e-02	ci right 6.804410e-02	k: 631	n:10000
Cons ci ratio: 3.622611e-02	ci left: 5.294702e-01	ci right 5.491069e-01	k: 5393	n:10000
KS ci ratio: 1.703240e-01	ci left: 4.600180e-02	ci right 5.466254e-02	k: 502	n:10000
LEPROT   10000 perm   2 sec   (6113 perm/sec)   p_kst 5.020000e-02   p_cons 5.393000e-01   p_joint 6.310000e-02

Joint ci ratio: 1.138029e-01	ci left: 5.280458e-02	ci right 5.922527e-02	k: 1119	n:20000
Cons ci ratio: 2.550939e-02	ci left: 5.344637e-01	ci right 5.483243e-01	k: 10828	n:20000
KS ci ratio: 1.223735e-01	ci left: 4.580631e-02	ci right 5.182574e-02	k: 975	n:20000
LEPROT   20000 perm   4 sec   (5421 perm/sec)   p_kst 4.875000e-02   p_cons 5.414000e-01   p_joint 5.595000e-02

Joint ci ratio: 8.856300e-02	ci left: 5.857883e-02	ci right 6.403984e-02	k: 1838	n:30000
Cons ci ratio: 2.075898e-02	ci left: 5.374092e-01	ci right 5.487158e-01	k: 16292	n:30000
KS ci ratio: 1.003877e-01	ci left: 4.593359e-02	ci right 5.082101e-02	k: 1450	n:30000
LEPROT   30000 perm   6 sec   (5202 perm/sec)   p_kst 4.833333e-02   p_cons 5.430667e-01   p_joint 6.126667e-02

Joint ci ratio: 7.834505e-02	ci left: 5.658780e-02	ci right 6.122649e-02	k: 2355	n:40000
Cons ci ratio: 1.792976e-02	ci left: 5.395039e-01	ci right 5.492897e-01	k: 21776	n:40000
KS ci ratio: 8.704904e-02	ci left: 4.614583e-02	ci right 5.037006e-02	k: 1929	n:40000
LEPROT   40000 perm   8 sec   (5034 perm/sec)   p_kst 4.822500e-02   p_cons 5.444000e-01   p_joint 5.887500e-02

Outputting figure to mutsig2_images.part000000000096/LEPROT.4_412_40000_0.048225_0.5444_0.058875.png
                gene_name: LEPROT
               theta_stop: 0.087 
                    nperm: 40000 
                     p_ks: 0.048 
        ci_ks_bounds_left: 0.046 
       ci_ks_bounds_right: 0.050 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.059 
     ci_joint_bounds_left: 0.057 
    ci_joint_bounds_right: 0.061 

Current progress: 31 percent done.
LGALS12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.114064e-02	ci left: 3.605262e-01	ci right 3.795496e-01	k: 3700	n:10000
Cons ci ratio: 7.229471e-02	ci left: 2.189190e-01	ci right 2.354402e-01	k: 2271	n:10000
KS ci ratio: 6.216491e-02	ci left: 2.755719e-01	ci right 2.933539e-01	k: 2844	n:10000
LGALS12   10000 perm   2 sec   (5857 perm/sec)   p_kst 2.844000e-01   p_cons 2.271000e-01   p_joint 3.700000e-01

Outputting figure to mutsig2_images.part000000000096/LGALS12.4_1050_10000_0.2844_0.2271_0.37.png
                gene_name: LGALS12
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 33 percent done.
LGR5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.471734e-02	ci left: 8.698917e-01	ci right 8.828882e-01	k: 8765	n:10000
Cons ci ratio: 3.163120e-02	ci left: 5.959416e-01	ci right 6.151968e-01	k: 6056	n:10000
KS ci ratio: 2.217922e-02	ci left: 7.489754e-01	ci right 7.658744e-01	k: 7575	n:10000
LGR5   10000 perm   2 sec   (5291 perm/sec)   p_kst 7.575000e-01   p_cons 6.056000e-01   p_joint 8.765000e-01

Outputting figure to mutsig2_images.part000000000096/LGR5.4_2796_10000_0.7575_0.6056_0.8765.png
                gene_name: LGR5
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 36 percent done.
LDHB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.794040e-02	ci left: 3.048095e-01	ci right 3.230990e-01	k: 3139	n:10000
KS ci ratio: 4.503252e-02	ci left: 4.212652e-01	ci right 4.407750e-01	k: 4310	n:10000
LDHB   10000 perm   2 sec   (5933 perm/sec)   p_kst 4.310000e-01   p_cons 3.139000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000096/LDHB.3_1033_10000_0.431_0.3139_1.png
                gene_name: LDHB
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 38 percent done.
LDHC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.776603e-02	ci left: 3.060990e-01	ci right 3.244087e-01	k: 3152	n:10000
Cons ci ratio: 7.217141e-02	ci left: 2.195112e-01	ci right 2.360477e-01	k: 2277	n:10000
KS ci ratio: 7.726487e-02	ci left: 1.967302e-01	ci right 2.126422e-01	k: 2046	n:10000
LDHC   10000 perm   2 sec   (5915 perm/sec)   p_kst 2.046000e-01   p_cons 2.277000e-01   p_joint 3.152000e-01

Outputting figure to mutsig2_images.part000000000096/LDHC.3_1027_10000_0.2046_0.2277_0.3152.png
                gene_name: LDHC
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 40 percent done.
LEF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.638676e-02	ci left: 5.272676e-01	ci right 5.469108e-01	k: 5371	n:10000
KS ci ratio: 3.311486e-02	ci left: 5.737646e-01	ci right 5.931867e-01	k: 5835	n:10000
LEF1   10000 perm   2 sec   (6201 perm/sec)   p_kst 5.835000e-01   p_cons 5.371000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000096/LEF1.3_1341_10000_0.5835_0.5371_1.png
                gene_name: LEF1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 43 percent done.
LEFTY2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.032079e-02	ci left: 7.800585e-01	ci right 7.961733e-01	k: 7882	n:10000
Cons ci ratio: 3.895970e-02	ci left: 4.931507e-01	ci right 5.128476e-01	k: 5030	n:10000
KS ci ratio: 2.899674e-02	ci left: 6.368375e-01	ci right 6.556772e-01	k: 6463	n:10000
LEFTY2   10000 perm   2 sec   (6134 perm/sec)   p_kst 6.463000e-01   p_cons 5.030000e-01   p_joint 7.882000e-01

Outputting figure to mutsig2_images.part000000000096/LEFTY2.3_1117_10000_0.6463_0.503_0.7882.png
                gene_name: LEFTY2
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 45 percent done.
LEMD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.612434e-01	ci left: 5.128492e-02	ci right 6.037601e-02	k: 557	n:10000
Cons ci ratio: 1.436501e-01	ci left: 6.430174e-02	ci right 7.435091e-02	k: 692	n:10000
KS ci ratio: 9.131491e-02	ci left: 1.484485e-01	ci right 1.627527e-01	k: 1555	n:10000
LEMD3   10000 perm   2 sec   (5518 perm/sec)   p_kst 1.555000e-01   p_cons 6.920000e-02   p_joint 5.570000e-02

Joint ci ratio: 8.923154e-02	ci left: 8.405991e-02	ci right 9.196034e-02	k: 1759	n:20000
Cons ci ratio: 1.007603e-01	ci left: 6.679456e-02	ci right 7.393096e-02	k: 1406	n:20000
KS ci ratio: 6.468121e-02	ci left: 1.501084e-01	ci right 1.601921e-01	k: 3102	n:20000
LEMD3   20000 perm   4 sec   (4847 perm/sec)   p_kst 1.551000e-01   p_cons 7.030000e-02   p_joint 8.795000e-02

Joint ci ratio: 7.716840e-02	ci left: 7.613559e-02	ci right 8.227953e-02	k: 2375	n:30000
Cons ci ratio: 8.184427e-02	ci left: 6.811878e-02	ci right 7.396462e-02	k: 2130	n:30000
KS ci ratio: 5.272179e-02	ci left: 1.514821e-01	ci right 1.597180e-01	k: 4667	n:30000
LEMD3   30000 perm   7 sec   (4603 perm/sec)   p_kst 1.555667e-01   p_cons 7.100000e-02   p_joint 7.916667e-02

Outputting figure to mutsig2_images.part000000000096/LEMD3.3_2788_30000_0.15557_0.071_0.079167.png
                gene_name: LEMD3
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.071 
      ci_cons_bounds_left: 0.068 
     ci_cons_bounds_right: 0.074 
                  p_joint: 0.079 
     ci_joint_bounds_left: 0.076 
    ci_joint_bounds_right: 0.082 

Current progress: 48 percent done.
LENG9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.324725e-02	ci left: 7.310817e-01	ci right 7.483784e-01	k: 7398	n:10000
KS ci ratio: 3.335384e-02	ci left: 5.702543e-01	ci right 5.896991e-01	k: 5800	n:10000
LENG9   10000 perm   2 sec   (5162 perm/sec)   p_kst 5.800000e-01   p_cons 7.398000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000096/LENG9.3_1510_10000_0.58_0.7398_1.png
                gene_name: LENG9
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
LEPRE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.367660e-02	ci left: 5.655412e-01	ci right 5.850149e-01	k: 5753	n:10000
Cons ci ratio: 2.932088e-02	ci left: 6.317090e-01	ci right 6.506087e-01	k: 6412	n:10000
KS ci ratio: 4.443180e-02	ci left: 4.278462e-01	ci right 4.473902e-01	k: 4376	n:10000
LEPRE1   10000 perm   2 sec   (5661 perm/sec)   p_kst 4.376000e-01   p_cons 6.412000e-01   p_joint 5.753000e-01

Outputting figure to mutsig2_images.part000000000096/LEPRE1.3_2290_10000_0.4376_0.6412_0.5753.png
                gene_name: LEPRE1
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 52 percent done.
LGALS4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.223957e-02	ci left: 7.479640e-01	ci right 7.648864e-01	k: 7565	n:10000
KS ci ratio: 1.716727e-02	ci left: 8.317498e-01	ci right 8.462521e-01	k: 8391	n:10000
LGALS4   10000 perm   2 sec   (4600 perm/sec)   p_kst 8.391000e-01   p_cons 7.565000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000096/LGALS4.3_1012_10000_0.8391_0.7565_1.png
                gene_name: LGALS4
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 55 percent done.
LGI2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.193667e-02	ci left: 2.770574e-01	ci right 2.948674e-01	k: 2859	n:10000
Cons ci ratio: 5.425286e-02	ci left: 3.335933e-01	ci right 3.522982e-01	k: 3429	n:10000
KS ci ratio: 7.934133e-02	ci left: 1.883574e-01	ci right 2.040200e-01	k: 1961	n:10000
LGI2   10000 perm   2 sec   (5931 perm/sec)   p_kst 1.961000e-01   p_cons 3.429000e-01   p_joint 2.859000e-01

Outputting figure to mutsig2_images.part000000000096/LGI2.3_1670_10000_0.1961_0.3429_0.2859.png
                gene_name: LGI2
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 57 percent done.
LGI4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.795978e-02	ci left: 1.938730e-01	ci right 2.097011e-01	k: 2017	n:10000
Cons ci ratio: 5.710380e-02	ci left: 3.110592e-01	ci right 3.294457e-01	k: 3202	n:10000
KS ci ratio: 9.096898e-02	ci left: 1.494297e-01	ci right 1.637710e-01	k: 1565	n:10000
LGI4   10000 perm   2 sec   (4060 perm/sec)   p_kst 1.565000e-01   p_cons 3.202000e-01   p_joint 2.017000e-01

Outputting figure to mutsig2_images.part000000000096/LGI4.3_1650_10000_0.1565_0.3202_0.2017.png
                gene_name: LGI4
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 60 percent done.
LGR4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.834897e-02	ci left: 5.010505e-01	ci right 5.207431e-01	k: 5109	n:10000
Cons ci ratio: 3.373865e-02	ci left: 5.646388e-01	ci right 5.841179e-01	k: 5744	n:10000
KS ci ratio: 4.664801e-02	ci left: 4.041232e-01	ci right 4.235270e-01	k: 4138	n:10000
LGR4   10000 perm   2 sec   (5487 perm/sec)   p_kst 4.138000e-01   p_cons 5.744000e-01   p_joint 5.109000e-01

Outputting figure to mutsig2_images.part000000000096/LGR4.3_2928_10000_0.4138_0.5744_0.5109.png
                gene_name: LGR4
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 62 percent done.
LHX9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.445811e-02	ci left: 3.319049e-01	ci right 3.505876e-01	k: 3412	n:10000
Cons ci ratio: 7.530342e-02	ci left: 2.051084e-01	ci right 2.212590e-01	k: 2131	n:10000
KS ci ratio: 7.080402e-02	ci left: 2.262242e-01	ci right 2.429307e-01	k: 2345	n:10000
LHX9   10000 perm   2 sec   (6003 perm/sec)   p_kst 2.345000e-01   p_cons 2.131000e-01   p_joint 3.412000e-01

Outputting figure to mutsig2_images.part000000000096/LHX9.3_1246_10000_0.2345_0.2131_0.3412.png
                gene_name: LHX9
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 64 percent done.
LIFR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.143814e-01	ci left: 9.905732e-02	ci right 1.111738e-01	k: 1050	n:10000
Cons ci ratio: 2.625735e-01	ci left: 1.893425e-02	ci right 2.474894e-02	k: 217	n:10000
KS ci ratio: 5.390563e-02	ci left: 3.364739e-01	ci right 3.552160e-01	k: 3458	n:10000
LIFR   10000 perm   2 sec   (5168 perm/sec)   p_kst 3.458000e-01   p_cons 2.170000e-02   p_joint 1.050000e-01

Joint ci ratio: 1.500435e-01	ci left: 3.051917e-02	ci right 3.551780e-02	k: 659	n:20000
Cons ci ratio: 1.800525e-01	ci left: 2.106263e-02	ci right 2.527757e-02	k: 462	n:20000
KS ci ratio: 3.825214e-02	ci left: 3.376633e-01	ci right 3.508820e-01	k: 6885	n:20000
LIFR   20000 perm   4 sec   (4569 perm/sec)   p_kst 3.442500e-01   p_cons 2.310000e-02   p_joint 3.295000e-02

Joint ci ratio: 1.179083e-01	ci left: 3.343453e-02	ci right 3.765603e-02	k: 1065	n:30000
Cons ci ratio: 1.445296e-01	ci left: 2.220120e-02	ci right 2.569183e-02	k: 717	n:30000
KS ci ratio: 3.132981e-02	ci left: 3.374942e-01	ci right 3.482696e-01	k: 10286	n:30000
LIFR   30000 perm   7 sec   (4397 perm/sec)   p_kst 3.428667e-01   p_cons 2.390000e-02   p_joint 3.550000e-02

Joint ci ratio: 1.037633e-01	ci left: 3.265968e-02	ci right 3.625832e-02	k: 1377	n:40000
Cons ci ratio: 1.238044e-01	ci left: 2.293435e-02	ci right 2.598522e-02	k: 977	n:40000
KS ci ratio: 2.727753e-02	ci left: 3.358304e-01	ci right 3.451428e-01	k: 13619	n:40000
LIFR   40000 perm   9 sec   (4265 perm/sec)   p_kst 3.404750e-01   p_cons 2.442500e-02   p_joint 3.442500e-02

Joint ci ratio: 8.127123e-02	ci left: 4.265024e-02	ci right 4.628289e-02	k: 2222	n:50000
Cons ci ratio: 1.118412e-01	ci left: 2.263727e-02	ci right 2.533838e-02	k: 1198	n:50000
KS ci ratio: 2.448931e-02	ci left: 3.346509e-01	ci right 3.429679e-01	k: 16940	n:50000
LIFR   50000 perm   12 sec   (4064 perm/sec)   p_kst 3.388000e-01   p_cons 2.396000e-02   p_joint 4.444000e-02

Joint ci ratio: 7.772713e-02	ci left: 3.908379e-02	ci right 4.226083e-02	k: 2439	n:60000
Cons ci ratio: 1.021258e-01	ci left: 2.274135e-02	ci right 2.520499e-02	k: 1437	n:60000
KS ci ratio: 2.231837e-02	ci left: 3.357603e-01	ci right 3.433552e-01	k: 20373	n:60000
LIFR   60000 perm   15 sec   (3887 perm/sec)   p_kst 3.395500e-01   p_cons 2.395000e-02   p_joint 4.065000e-02

Joint ci ratio: 8.184788e-02	ci left: 3.042842e-02	ci right 3.303915e-02	k: 2220	n:70000
Cons ci ratio: 9.459839e-02	ci left: 2.280906e-02	ci right 2.508778e-02	k: 1675	n:70000
KS ci ratio: 2.067377e-02	ci left: 3.358064e-01	ci right 3.428355e-01	k: 23752	n:70000
LIFR   70000 perm   19 sec   (3762 perm/sec)   p_kst 3.393143e-01   p_cons 2.392857e-02   p_joint 3.171429e-02

Outputting figure to mutsig2_images.part000000000096/LIFR.3_3370_70000_0.33931_0.023929_0.031714.png
                gene_name: LIFR
               theta_stop: 0.095 
                    nperm: 70000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.024 
      ci_cons_bounds_left: 0.023 
     ci_cons_bounds_right: 0.025 
                  p_joint: 0.032 
     ci_joint_bounds_left: 0.030 
    ci_joint_bounds_right: 0.033 

Current progress: 67 percent done.
LIG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.307401e-02	ci left: 5.743665e-01	ci right 5.937845e-01	k: 5841	n:10000
Cons ci ratio: 4.975474e-02	ci left: 3.733580e-01	ci right 3.925103e-01	k: 3829	n:10000
KS ci ratio: 1.679726e-02	ci left: 8.376546e-01	ci right 8.519439e-01	k: 8449	n:10000
LIG3   10000 perm   2 sec   (5113 perm/sec)   p_kst 8.449000e-01   p_cons 3.829000e-01   p_joint 5.841000e-01

Outputting figure to mutsig2_images.part000000000096/LIG3.3_3164_10000_0.8449_0.3829_0.5841.png
                gene_name: LIG3
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 69 percent done.
LILRA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.423304e-01	ci left: 6.546168e-02	ci right 7.559023e-02	k: 704	n:10000
Cons ci ratio: 2.809059e-01	ci left: 1.641496e-02	ci right 2.187026e-02	k: 190	n:10000
KS ci ratio: 4.092516e-02	ci left: 4.685668e-01	ci right 4.882458e-01	k: 4784	n:10000
LILRA3   10000 perm   2 sec   (6184 perm/sec)   p_kst 4.784000e-01   p_cons 1.900000e-02   p_joint 7.040000e-02

Joint ci ratio: 8.829953e-02	ci left: 8.572561e-02	ci right 9.369414e-02	k: 1793	n:20000
Cons ci ratio: 1.804519e-01	ci left: 2.096705e-02	ci right 2.517319e-02	k: 460	n:20000
KS ci ratio: 2.920590e-02	ci left: 4.669092e-01	ci right 4.807984e-01	k: 9477	n:20000
LILRA3   20000 perm   4 sec   (5449 perm/sec)   p_kst 4.738500e-01   p_cons 2.300000e-02   p_joint 8.965000e-02

Joint ci ratio: 8.621468e-02	ci left: 6.168064e-02	ci right 6.727074e-02	k: 1933	n:30000
Cons ci ratio: 1.455715e-01	ci left: 2.187970e-02	ci right 2.534674e-02	k: 707	n:30000
KS ci ratio: 2.397907e-02	ci left: 4.654379e-01	ci right 4.767677e-01	k: 14133	n:30000
LILRA3   30000 perm   6 sec   (5181 perm/sec)   p_kst 4.711000e-01   p_cons 2.356667e-02   p_joint 6.443333e-02

Joint ci ratio: 8.417825e-02	ci left: 4.925621e-02	ci right 5.360921e-02	k: 2056	n:40000
Cons ci ratio: 1.263436e-01	ci left: 2.201341e-02	ci right 2.500631e-02	k: 939	n:40000
KS ci ratio: 2.076676e-02	ci left: 4.661980e-01	ci right 4.760062e-01	k: 18844	n:40000
LILRA3   40000 perm   8 sec   (5000 perm/sec)   p_kst 4.711000e-01   p_cons 2.347500e-02   p_joint 5.140000e-02

Joint ci ratio: 6.568159e-02	ci left: 6.431163e-02	ci right 6.869887e-02	k: 3324	n:50000
Cons ci ratio: 1.132029e-01	ci left: 2.209268e-02	ci right 2.476304e-02	k: 1170	n:50000
KS ci ratio: 1.861854e-02	ci left: 4.655372e-01	ci right 4.743063e-01	k: 23496	n:50000
LILRA3   50000 perm   10 sec   (4866 perm/sec)   p_kst 4.699200e-01   p_cons 2.340000e-02   p_joint 6.648000e-02

Joint ci ratio: 6.342694e-02	ci left: 5.794854e-02	ci right 6.176084e-02	k: 3590	n:60000
Cons ci ratio: 1.036879e-01	ci left: 2.205897e-02	ci right 2.448745e-02	k: 1395	n:60000
KS ci ratio: 1.701132e-02	ci left: 4.654833e-01	ci right 4.734864e-01	k: 28169	n:60000
LILRA3   60000 perm   13 sec   (4753 perm/sec)   p_kst 4.694833e-01   p_cons 2.325000e-02   p_joint 5.983333e-02

Joint ci ratio: 6.543257e-02	ci left: 4.717335e-02	ci right 5.037847e-02	k: 3413	n:70000
Cons ci ratio: 1.051787e-01	ci left: 1.843281e-02	ci right 2.049301e-02	k: 1361	n:70000
KS ci ratio: 1.582322e-02	ci left: 4.634554e-01	ci right 4.708616e-01	k: 32701	n:70000
LILRA3   70000 perm   15 sec   (4643 perm/sec)   p_kst 4.671571e-01   p_cons 1.944286e-02   p_joint 4.875714e-02

Joint ci ratio: 6.259104e-02	ci left: 4.527274e-02	ci right 4.821024e-02	k: 3738	n:80000
Cons ci ratio: 9.928630e-02	ci left: 1.816273e-02	ci right 2.007237e-02	k: 1528	n:80000
KS ci ratio: 1.480599e-02	ci left: 4.635378e-01	ci right 4.704646e-01	k: 37360	n:80000
LILRA3   80000 perm   18 sec   (4552 perm/sec)   p_kst 4.670000e-01   p_cons 1.910000e-02   p_joint 4.672500e-02

Outputting figure to mutsig2_images.part000000000096/LILRA3.3_1348_80000_0.467_0.0191_0.046725.png
                gene_name: LILRA3
               theta_stop: 0.099 
                    nperm: 80000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.019 
      ci_cons_bounds_left: 0.018 
     ci_cons_bounds_right: 0.020 
                  p_joint: 0.047 
     ci_joint_bounds_left: 0.045 
    ci_joint_bounds_right: 0.048 

Current progress: 71 percent done.
LDHAL6A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.910962e-02	ci left: 8.001410e-01	ci right 8.156792e-01	k: 8080	n:10000
Cons ci ratio: 3.952468e-02	ci left: 4.859529e-01	ci right 5.056495e-01	k: 4958	n:10000
KS ci ratio: 8.227486e-02	ci left: 1.773337e-01	ci right 1.926503e-01	k: 1849	n:10000
LDHAL6A   10000 perm   2 sec   (6347 perm/sec)   p_kst 1.849000e-01   p_cons 4.958000e-01   p_joint 8.080000e-01

Outputting figure to mutsig2_images.part000000000096/LDHAL6A.2_1027_10000_0.1849_0.4958_0.808.png
                gene_name: LDHAL6A
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 74 percent done.
LECT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.712913e-02	ci left: 8.323605e-01	ci right 8.468411e-01	k: 8397	n:10000
Cons ci ratio: 6.039576e-02	ci left: 2.873607e-01	ci right 3.053581e-01	k: 2963	n:10000
KS ci ratio: 3.269431e-02	ci left: 5.799842e-01	ci right 5.993635e-01	k: 5897	n:10000
LECT1   10000 perm   2 sec   (6526 perm/sec)   p_kst 5.897000e-01   p_cons 2.963000e-01   p_joint 8.397000e-01

Outputting figure to mutsig2_images.part000000000096/LECT1.2_1033_10000_0.5897_0.2963_0.8397.png
                gene_name: LECT1
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 76 percent done.
LELP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.991392e-02	ci left: 4.810557e-01	ci right 5.007496e-01	k: 4909	n:10000
Cons ci ratio: 8.720168e-02	ci left: 1.607198e-01	ci right 1.754741e-01	k: 1680	n:10000
KS ci ratio: 5.556630e-02	ci left: 3.229685e-01	ci right 3.415293e-01	k: 3322	n:10000
LELP1   10000 perm   1 sec   (7018 perm/sec)   p_kst 3.322000e-01   p_cons 1.680000e-01   p_joint 4.909000e-01

Outputting figure to mutsig2_images.part000000000096/LELP1.2_301_10000_0.3322_0.168_0.4909.png
                gene_name: LELP1
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 79 percent done.
LENEP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.606649e-02	ci left: 4.102013e-01	ci right 4.296454e-01	k: 4199	n:10000
Cons ci ratio: 4.150350e-02	ci left: 4.615758e-01	ci right 4.812409e-01	k: 4714	n:10000
KS ci ratio: 7.944208e-02	ci left: 1.879635e-01	ci right 2.036141e-01	k: 1957	n:10000
LENEP   10000 perm   1 sec   (7118 perm/sec)   p_kst 1.957000e-01   p_cons 4.714000e-01   p_joint 4.199000e-01

Outputting figure to mutsig2_images.part000000000096/LENEP.2_190_10000_0.1957_0.4714_0.4199.png
                gene_name: LENEP
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 81 percent done.
LETM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.423735e-02	ci left: 1.405053e-01	ci right 1.545008e-01	k: 1474	n:10000
KS ci ratio: 2.108706e-01	ci left: 2.986994e-02	ci right 3.700523e-02	k: 333	n:10000
LETM2   10000 perm   2 sec   (6373 perm/sec)   p_kst 3.330000e-02   p_cons 1.474000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 7.140574e-02	ci left: 1.262544e-01	ci right 1.356532e-01	k: 2618	n:20000
KS ci ratio: 1.512324e-01	ci left: 3.003745e-02	ci right 3.499968e-02	k: 649	n:20000
LETM2   20000 perm   4 sec   (5682 perm/sec)   p_kst 3.245000e-02   p_cons 1.309000e-01   p_joint 1

Joint ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
Cons ci ratio: 5.781697e-02	ci left: 1.290118e-01	ci right 1.367261e-01	k: 3985	n:30000
KS ci ratio: 1.274540e-01	ci left: 2.861535e-02	ci right 3.254292e-02	k: 916	n:30000
LETM2   30000 perm   5 sec   (5464 perm/sec)   p_kst 3.053333e-02   p_cons 1.328333e-01   p_joint 1

Joint ci ratio: 9.799510e-05	ci left: 9.999078e-01	ci right 1	k: 40000	n:40000
Cons ci ratio: 4.991777e-02	ci left: 1.302306e-01	ci right 1.369227e-01	k: 5342	n:40000
KS ci ratio: 1.114490e-01	ci left: 2.832564e-02	ci right 3.169305e-02	k: 1199	n:40000
LETM2   40000 perm   8 sec   (5305 perm/sec)   p_kst 2.997500e-02   p_cons 1.335500e-01   p_joint 1

Joint ci ratio: 7.839686e-05	ci left: 9.999262e-01	ci right 1	k: 50000	n:50000
Cons ci ratio: 4.478634e-02	ci left: 1.298764e-01	ci right 1.358463e-01	k: 6642	n:50000
KS ci ratio: 9.907210e-02	ci left: 2.885389e-02	ci right 3.188096e-02	k: 1517	n:50000
LETM2   50000 perm   10 sec   (5169 perm/sec)   p_kst 3.034000e-02   p_cons 1.328400e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000096/LETM2.2_1223_50000_0.03034_0.13284_1.png
                gene_name: LETM2
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.030 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
LGALS8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.490955e-03	ci left: 9.700550e-01	ci right 9.764653e-01	k: 9734	n:10000
Cons ci ratio: 1.559827e-01	ci left: 5.474973e-02	ci right 6.410897e-02	k: 593	n:10000
KS ci ratio: 1.094871e-02	ci left: 9.224484e-01	ci right 9.327009e-01	k: 9277	n:10000
LGALS8   10000 perm   1 sec   (6676 perm/sec)   p_kst 9.277000e-01   p_cons 5.930000e-02   p_joint 9.734000e-01

Joint ci ratio: 3.720326e-03	ci left: 9.804284e-01	ci right 9.841295e-01	k: 19647	n:20000
Cons ci ratio: 1.087026e-01	ci left: 5.772211e-02	ci right 6.440620e-02	k: 1220	n:20000
KS ci ratio: 7.716935e-03	ci left: 9.244323e-01	ci right 9.316427e-01	k: 18562	n:20000
LGALS8   20000 perm   3 sec   (5850 perm/sec)   p_kst 9.281000e-01   p_cons 6.100000e-02   p_joint 9.823500e-01

Joint ci ratio: 3.774546e-03	ci left: 9.710684e-01	ci right 9.747726e-01	k: 29189	n:30000
Cons ci ratio: 8.934188e-02	ci left: 5.759973e-02	ci right 6.301914e-02	k: 1808	n:30000
KS ci ratio: 6.309767e-03	ci left: 9.249148e-01	ci right 9.308020e-01	k: 27837	n:30000
LGALS8   30000 perm   5 sec   (5550 perm/sec)   p_kst 9.279000e-01   p_cons 6.026667e-02   p_joint 9.729667e-01

Outputting figure to mutsig2_images.part000000000096/LGALS8.2_1120_30000_0.9279_0.060267_0.97297.png
                gene_name: LGALS8
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.060 
      ci_cons_bounds_left: 0.058 
     ci_cons_bounds_right: 0.063 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.97 

Current progress: 86 percent done.
LGI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.590188e-03	ci left: 9.692095e-01	ci right 9.757113e-01	k: 9726	n:10000
KS ci ratio: 1.797425e-02	ci left: 8.187299e-01	ci right 8.336795e-01	k: 8263	n:10000
LGI1   10000 perm   2 sec   (6162 perm/sec)   p_kst 8.263000e-01   p_cons 9.726000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000096/LGI1.2_1706_10000_0.8263_0.9726_1.png
                gene_name: LGI1
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
LGI3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.731320e-02	ci left: 8.294091e-01	ci right 8.439942e-01	k: 8368	n:10000
Cons ci ratio: 1.068561e-02	ci left: 9.257524e-01	ci right 9.357949e-01	k: 9309	n:10000
KS ci ratio: 1.887534e-02	ci left: 8.039987e-01	ci right 8.194193e-01	k: 8118	n:10000
LGI3   10000 perm   2 sec   (6384 perm/sec)   p_kst 8.118000e-01   p_cons 9.309000e-01   p_joint 8.368000e-01

Outputting figure to mutsig2_images.part000000000096/LGI3.2_1679_10000_0.8118_0.9309_0.8368.png
                gene_name: LGI3
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 90 percent done.
LGR6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.909800e-02	ci left: 3.796273e-01	ci right 3.988373e-01	k: 3892	n:10000
KS ci ratio: 2.619358e-02	ci left: 6.821411e-01	ci right 7.003474e-01	k: 6913	n:10000
LGR6   10000 perm   2 sec   (5566 perm/sec)   p_kst 6.913000e-01   p_cons 3.892000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000096/LGR6.2_3123_10000_0.6913_0.3892_1.png
                gene_name: LGR6
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
LHFPL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.482671e-02	ci left: 7.047290e-01	ci right 7.225464e-01	k: 7137	n:10000
KS ci ratio: 5.119552e-02	ci left: 3.600290e-01	ci right 3.790471e-01	k: 3695	n:10000
LHFPL1   10000 perm   1 sec   (6783 perm/sec)   p_kst 3.695000e-01   p_cons 7.137000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000096/LHFPL1.2_675_10000_0.3695_0.7137_1.png
                gene_name: LHFPL1
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
LHFPL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.223702e-02	ci left: 5.868075e-01	ci right 6.061363e-01	k: 5965	n:10000
Cons ci ratio: 1.437615e-01	ci left: 6.420510e-02	ci right 7.424761e-02	k: 691	n:10000
KS ci ratio: 5.247176e-02	ci left: 3.486956e-01	ci right 3.675871e-01	k: 3581	n:10000
LHFPL3   10000 perm   1 sec   (6717 perm/sec)   p_kst 3.581000e-01   p_cons 6.910000e-02   p_joint 5.965000e-01

Joint ci ratio: 2.315791e-02	ci left: 5.820434e-01	ci right 5.957308e-01	k: 11778	n:20000
Cons ci ratio: 1.015387e-01	ci left: 6.581811e-02	ci right 7.290771e-02	k: 1386	n:20000
KS ci ratio: 3.690616e-02	ci left: 3.539409e-01	ci right 3.672996e-01	k: 7212	n:20000
LHFPL3   20000 perm   3 sec   (5922 perm/sec)   p_kst 3.606000e-01   p_cons 6.930000e-02   p_joint 5.889000e-01

Joint ci ratio: 2.318078e-02	ci left: 4.823284e-01	ci right 4.936739e-01	k: 14640	n:30000
Cons ci ratio: 8.407404e-02	ci left: 6.471901e-02	ci right 7.043175e-02	k: 2026	n:30000
KS ci ratio: 2.977443e-02	ci left: 3.607117e-01	ci right 3.716476e-01	k: 10985	n:30000
LHFPL3   30000 perm   5 sec   (5606 perm/sec)   p_kst 3.661667e-01   p_cons 6.753333e-02   p_joint 4.880000e-01

Outputting figure to mutsig2_images.part000000000096/LHFPL3.2_723_30000_0.36617_0.067533_0.488.png
                gene_name: LHFPL3
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.068 
      ci_cons_bounds_left: 0.065 
     ci_cons_bounds_right: 0.070 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.49 

Current progress: 98 percent done.
LHX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.158652e-01	ci left: 9.671912e-02	ci right 1.087134e-01	k: 1026	n:10000
Cons ci ratio: 3.374555e-02	ci left: 5.645385e-01	ci right 5.840182e-01	k: 5743	n:10000
KS ci ratio: 1.805768e-01	ci left: 4.092429e-02	ci right 4.914339e-02	k: 449	n:10000
LHX2   10000 perm   2 sec   (6530 perm/sec)   p_kst 4.490000e-02   p_cons 5.743000e-01   p_joint 1.026000e-01

Joint ci ratio: 7.633143e-02	ci left: 1.120355e-01	ci right 1.209763e-01	k: 2329	n:20000
Cons ci ratio: 2.361032e-02	ci left: 5.726225e-01	ci right 5.863544e-01	k: 11590	n:20000
KS ci ratio: 1.276157e-01	ci left: 4.216829e-02	ci right 4.796490e-02	k: 900	n:20000
LHX2   20000 perm   3 sec   (5753 perm/sec)   p_kst 4.500000e-02   p_cons 5.795000e-01   p_joint 1.164500e-01

Joint ci ratio: 4.014555e-02	ci left: 2.363013e-01	ci right 2.460155e-01	k: 7234	n:30000
Cons ci ratio: 1.939041e-02	ci left: 5.710518e-01	ci right 5.822667e-01	k: 17300	n:30000
KS ci ratio: 1.052010e-01	ci left: 4.190172e-02	ci right 4.658706e-02	k: 1326	n:30000
LHX2   30000 perm   5 sec   (5464 perm/sec)   p_kst 4.420000e-02   p_cons 5.766667e-01   p_joint 2.411333e-01

Joint ci ratio: 5.897158e-02	ci left: 9.653390e-02	ci right 1.024244e-01	k: 3978	n:40000
Cons ci ratio: 1.701186e-02	ci left: 5.654563e-01	ci right 5.751834e-01	k: 22813	n:40000
KS ci ratio: 9.084775e-02	ci left: 4.245096e-02	ci right 4.651550e-02	k: 1778	n:40000
LHX2   40000 perm   8 sec   (5256 perm/sec)   p_kst 4.445000e-02   p_cons 5.703250e-01   p_joint 9.945000e-02

Outputting figure to mutsig2_images.part000000000096/LHX2.2_1241_40000_0.04445_0.57032_0.09945.png
                gene_name: LHX2
               theta_stop: 0.091 
                    nperm: 40000 
                     p_ks: 0.044 
        ci_ks_bounds_left: 0.042 
       ci_ks_bounds_right: 0.047 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.099 
     ci_joint_bounds_left: 0.097 
    ci_joint_bounds_right: 0.10 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000096
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 96 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1700>
Subject: Job 8004226: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1700>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000097> was used as the working directory.
Started at Sun Nov 11 15:07:41 2012
Results reported at Sun Nov 11 16:43:52 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000097.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000097.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 97  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000097.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   5866.43 sec.
    Max Memory :      4735 MB
    Max Swap   :      7149 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
97
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 97
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 97: processing genes 8686 - 8776
Calculating significance of each gene.
Using projection method.
8686	LILRA4	8.017986e-01
8687	LILRA5	1.288701e-01
8688	LILRA6	8.182265e-01
8689	LILRB1	8.467997e-01
8690	LILRB2	8.146402e-01
8691	LILRB3	7.281542e-02
8692	LILRB4	7.233010e-01
8693	LILRB5	1.286743e-01
8694	LIM2	1
8695	LIMA1	7.531560e-01
8696	LIMCH1	4.878229e-01
8697	LIMD1	1
8698	LIMD2	3.160041e-01
8699	LIME1	1
8700	LIMK1	1
8701	LIMK2	8.004736e-01
8702	LIMS1	2.052480e-01
8703	LIMS2	5.309612e-01
8704	LIN28A	1
8705	LIN28B	6.718228e-01
8706	LIN37	1.202745e-02
8707	LIN52	1
8708	LIN54	7.010378e-01
8709	LIN7A	2.247519e-01
8710	LIN7B	1
8711	LIN7C	1
8712	LIN9	2.571832e-01
8713	LINGO1	1
8714	LINGO2	2.366403e-01
8715	LINGO3	1
8716	LINGO4	9.012719e-01
8717	LINS1	1
8718	LIPA	4.747497e-01
8719	LIPC	1
8720	LIPE	1
8721	LIPF	7.597787e-01
8722	LIPG	2.410968e-01
8723	LIPH	2.792182e-01
8724	LIPI	7.591151e-01
8725	LIPJ	2.779998e-01
8726	LIPK	2.577959e-01
8727	LIPN	1
8728	LIPT1	1
8729	LITAF	2.970299e-01
8730	LIX1	1
8731	LIX1L	2.875396e-01
8732	LLGL1	9.807079e-01
8733	LLGL2	8.012749e-01
8734	LLPH	1
8735	LMAN1	4.484180e-01
8736	LMAN1L	9.051275e-01
8737	LMAN2	7.400597e-01
8738	LMAN2L	1
8739	LMBR1	1
8740	LMBR1L	8.652394e-01
8741	LMBRD1	6.645400e-01
8742	LMBRD2	6.552245e-03
8743	LMCD1	1
8744	LMF1	8.242289e-01
8745	LMF2	6.328312e-01
8746	LMLN	1.962354e-01
8747	LMNA	8.911958e-01
8748	LMNB1	1
8749	LMNB2	1
8750	LMO1	1
8751	LMO2	1
8752	LMO3	1
8753	LMO4	1
8754	LMO7	5.587372e-01
8755	LMOD1	1.915717e-01
8756	LMOD2	4.631073e-01
8757	LMOD3	8.583392e-01
8758	LMTK2	1
8759	LMTK3	9.251512e-01
8760	LMX1A	3.947259e-01
8761	LMX1B	5.914330e-01
8762	LNP1	1
8763	LNPEP	8.569935e-01
8764	LNX1	8.576086e-01
8765	LNX2	9.042799e-01
8766	LOC100130932	1
8767	LOC100302652	1
8768	LOC150786	1
8769	LOC153328	2.802557e-01
8770	LOC200726	9.915253e-02
8771	LOC285033	1.154313e-02
8772	LOC286238	1.496806e-02
8773	LOC401052	1
8774	LOC402644	1
8775	LOC440563	1
8776	LOC55908	1
Done

Running MutSig 2:
Scatter job 97: processing genes 8686 - 8776
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
LMBRD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.374239e-02	ci left: 8.843180e-01	ci right 8.966535e-01	k: 8906	n:10000
KS ci ratio: 1.376352e-02	ci left: 8.840108e-01	ci right 8.963609e-01	k: 8903	n:10000
LMBRD2   10000 perm   2 sec   (5315 perm/sec)   p_kst 8.903000e-01   p_cons 8.906000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000097/LMBRD2.8_2156_10000_0.8903_0.8906_1.png
                gene_name: LMBRD2
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 2 percent done.
LILRB5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.917035e-02	ci left: 3.789306e-01	ci right 3.981344e-01	k: 3885	n:10000
Cons ci ratio: 5.030657e-02	ci left: 3.681846e-01	ci right 3.872867e-01	k: 3777	n:10000
KS ci ratio: 7.934133e-02	ci left: 1.883574e-01	ci right 2.040200e-01	k: 1961	n:10000
LILRB5   10000 perm   2 sec   (5657 perm/sec)   p_kst 1.961000e-01   p_cons 3.777000e-01   p_joint 3.885000e-01

Outputting figure to mutsig2_images.part000000000097/LILRB5.7_1828_10000_0.1961_0.3777_0.3885.png
                gene_name: LILRB5
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 5 percent done.
LMO7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.608320e-02	ci left: 6.839552e-01	ci right 7.021322e-01	k: 6931	n:10000
Cons ci ratio: 4.822146e-02	ci left: 3.881880e-01	ci right 4.074716e-01	k: 3978	n:10000
KS ci ratio: 1.531595e-02	ci left: 8.608001e-01	ci right 8.741851e-01	k: 8676	n:10000
LMO7   10000 perm   2 sec   (4283 perm/sec)   p_kst 8.676000e-01   p_cons 3.978000e-01   p_joint 6.931000e-01

Outputting figure to mutsig2_images.part000000000097/LMO7.7_5250_10000_0.8676_0.3978_0.6931.png
                gene_name: LMO7
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 7 percent done.
LINGO2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.412956e-02	ci left: 7.163357e-01	ci right 7.339330e-01	k: 7252	n:10000
KS ci ratio: 1.038389e-02	ci left: 9.294731e-01	ci right 9.392720e-01	k: 9345	n:10000
LINGO2   10000 perm   2 sec   (5347 perm/sec)   p_kst 9.345000e-01   p_cons 7.252000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000097/LINGO2.6_1825_10000_0.9345_0.7252_1.png
                gene_name: LINGO2
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 9 percent done.
LIPI
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.855993e-01	ci left: 3.872553e-02	ci right 4.674361e-02	k: 426	n:10000
Cons ci ratio: 1.886187e-01	ci left: 3.748413e-02	ci right 4.538584e-02	k: 413	n:10000
KS ci ratio: 1.378589e-01	ci left: 6.962154e-02	ci right 8.002777e-02	k: 747	n:10000
LIPI   10000 perm   2 sec   (5581 perm/sec)   p_kst 7.470000e-02   p_cons 4.130000e-02   p_joint 4.260000e-02

Joint ci ratio: 9.117641e-02	ci left: 8.072986e-02	ci right 8.849141e-02	k: 1691	n:20000
Cons ci ratio: 1.324614e-01	ci left: 3.916497e-02	ci right 4.476918e-02	k: 838	n:20000
KS ci ratio: 9.914022e-02	ci left: 6.889464e-02	ci right 7.613023e-02	k: 1449	n:20000
LIPI   20000 perm   4 sec   (5024 perm/sec)   p_kst 7.245000e-02   p_cons 4.190000e-02   p_joint 8.455000e-02

Joint ci ratio: 9.585679e-02	ci left: 5.026355e-02	ci right 5.535683e-02	k: 1583	n:30000
Cons ci ratio: 1.095946e-01	ci left: 3.865423e-02	ci right 4.316856e-02	k: 1226	n:30000
KS ci ratio: 7.913862e-02	ci left: 7.260038e-02	ci right 7.861545e-02	k: 2267	n:30000
LIPI   30000 perm   6 sec   (4819 perm/sec)   p_kst 7.556667e-02   p_cons 4.086667e-02   p_joint 5.276667e-02

Joint ci ratio: 8.219617e-02	ci left: 5.158438e-02	ci right 5.603068e-02	k: 2151	n:40000
Cons ci ratio: 9.446145e-02	ci left: 3.932200e-02	ci right 4.324495e-02	k: 1650	n:40000
KS ci ratio: 6.859766e-02	ci left: 7.288010e-02	ci right 7.808173e-02	k: 3018	n:40000
LIPI   40000 perm   9 sec   (4672 perm/sec)   p_kst 7.545000e-02   p_cons 4.125000e-02   p_joint 5.377500e-02

Outputting figure to mutsig2_images.part000000000097/LIPI.6_1486_40000_0.07545_0.04125_0.053775.png
                gene_name: LIPI
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.075 
        ci_ks_bounds_left: 0.073 
       ci_ks_bounds_right: 0.078 
                   p_cons: 0.041 
      ci_cons_bounds_left: 0.039 
     ci_cons_bounds_right: 0.043 
                  p_joint: 0.054 
     ci_joint_bounds_left: 0.052 
    ci_joint_bounds_right: 0.056 

Current progress: 12 percent done.
LILRA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.011378e-02	ci left: 7.835050e-01	ci right 7.995249e-01	k: 7916	n:10000
Cons ci ratio: 4.692793e-02	ci left: 4.012342e-01	ci right 4.206178e-01	k: 4109	n:10000
KS ci ratio: 2.261969e-02	ci left: 7.415933e-01	ci right 7.586608e-01	k: 7502	n:10000
LILRA4   10000 perm   2 sec   (5872 perm/sec)   p_kst 7.502000e-01   p_cons 4.109000e-01   p_joint 7.916000e-01

Outputting figure to mutsig2_images.part000000000097/LILRA4.5_1532_10000_0.7502_0.4109_0.7916.png
                gene_name: LILRA4
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 14 percent done.
LILRA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.859226e-02	ci left: 3.000492e-01	ci right 3.182621e-01	k: 3091	n:10000
Cons ci ratio: 1.053044e-01	ci left: 1.152552e-01	ci right 1.281660e-01	k: 1216	n:10000
KS ci ratio: 2.845350e-02	ci left: 6.454882e-01	ci right 6.642215e-01	k: 6549	n:10000
LILRA6   10000 perm   2 sec   (6231 perm/sec)   p_kst 6.549000e-01   p_cons 1.216000e-01   p_joint 3.091000e-01

Joint ci ratio: 3.930017e-02	ci left: 3.256224e-01	ci right 3.387264e-01	k: 6643	n:20000
Cons ci ratio: 7.363845e-02	ci left: 1.195114e-01	ci right 1.286982e-01	k: 2481	n:20000
KS ci ratio: 2.046209e-02	ci left: 6.405818e-01	ci right 6.538754e-01	k: 12945	n:20000
LILRA6   20000 perm   4 sec   (5565 perm/sec)   p_kst 6.472500e-01   p_cons 1.240500e-01   p_joint 3.321500e-01

Outputting figure to mutsig2_images.part000000000097/LILRA6.5_1478_20000_0.64725_0.12405_0.33215.png
                gene_name: LILRA6
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 16 percent done.
LILRB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.093290e-02	ci left: 3.624157e-01	ci right 3.814590e-01	k: 3719	n:10000
Cons ci ratio: 4.647540e-02	ci left: 4.059166e-01	ci right 4.253326e-01	k: 4156	n:10000
KS ci ratio: 7.450460e-02	ci left: 2.086584e-01	ci right 2.249069e-01	k: 2167	n:10000
LILRB1   10000 perm   2 sec   (5981 perm/sec)   p_kst 2.167000e-01   p_cons 4.156000e-01   p_joint 3.719000e-01

Outputting figure to mutsig2_images.part000000000097/LILRB1.5_2015_10000_0.2167_0.4156_0.3719.png
                gene_name: LILRB1
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 19 percent done.
LILRB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.391782e-02	ci left: 7.198696e-01	ci right 7.373970e-01	k: 7287	n:10000
Cons ci ratio: 3.124198e-02	ci left: 6.018656e-01	ci right 6.210694e-01	k: 6115	n:10000
KS ci ratio: 4.250783e-02	ci left: 4.496954e-01	ci right 4.693282e-01	k: 4595	n:10000
LILRB4   10000 perm   2 sec   (5817 perm/sec)   p_kst 4.595000e-01   p_cons 6.115000e-01   p_joint 7.287000e-01

Outputting figure to mutsig2_images.part000000000097/LILRB4.5_1395_10000_0.4595_0.6115_0.7287.png
                gene_name: LILRB4
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 21 percent done.
LIMCH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.643716e-02	ci left: 4.063151e-01	ci right 4.257338e-01	k: 4160	n:10000
Cons ci ratio: 8.958253e-02	ci left: 1.534534e-01	ci right 1.679449e-01	k: 1606	n:10000
KS ci ratio: 2.669171e-02	ci left: 6.739793e-01	ci right 6.923139e-01	k: 6832	n:10000
LIMCH1   10000 perm   2 sec   (5106 perm/sec)   p_kst 6.832000e-01   p_cons 1.606000e-01   p_joint 4.160000e-01

Outputting figure to mutsig2_images.part000000000097/LIMCH1.5_3388_10000_0.6832_0.1606_0.416.png
                gene_name: LIMCH1
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 23 percent done.
LMLN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.318649e-02	ci left: 1.740876e-01	ci right 1.892983e-01	k: 1816	n:10000
Cons ci ratio: 8.585446e-02	ci left: 1.650429e-01	ci right 1.799484e-01	k: 1724	n:10000
KS ci ratio: 8.203014e-02	ci left: 1.782191e-01	ci right 1.935643e-01	k: 1858	n:10000
LMLN   10000 perm   2 sec   (5474 perm/sec)   p_kst 1.858000e-01   p_cons 1.724000e-01   p_joint 1.816000e-01

Outputting figure to mutsig2_images.part000000000097/LMLN.5_2147_10000_0.1858_0.1724_0.1816.png
                gene_name: LMLN
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.19 

Current progress: 26 percent done.
LILRB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.197598e-02	ci left: 1.784159e-01	ci right 1.937674e-01	k: 1860	n:10000
Cons ci ratio: 5.247176e-02	ci left: 3.486956e-01	ci right 3.675871e-01	k: 3581	n:10000
KS ci ratio: 9.201623e-02	ci left: 1.464866e-01	ci right 1.607158e-01	k: 1535	n:10000
LILRB2   10000 perm   2 sec   (5693 perm/sec)   p_kst 1.535000e-01   p_cons 3.581000e-01   p_joint 1.860000e-01

Outputting figure to mutsig2_images.part000000000097/LILRB2.4_1849_10000_0.1535_0.3581_0.186.png
                gene_name: LILRB2
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 28 percent done.
LILRB3
Processing conservation and coverage...
Processing mutations... 
Skipping 2 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.323893e-01	ci left: 7.524035e-02	ci right 8.600545e-02	k: 805	n:10000
Cons ci ratio: 1.765078e-01	ci left: 4.283864e-02	ci right 5.122777e-02	k: 469	n:10000
KS ci ratio: 4.777161e-02	ci left: 3.926687e-01	ci right 4.119882e-01	k: 4023	n:10000
LILRB3   10000 perm   2 sec   (6076 perm/sec)   p_kst 4.023000e-01   p_cons 4.690000e-02   p_joint 8.050000e-02

Joint ci ratio: 9.936204e-02	ci left: 6.860155e-02	ci right 7.582341e-02	k: 1443	n:20000
Cons ci ratio: 1.244658e-01	ci left: 4.430197e-02	ci right 5.023055e-02	k: 944	n:20000
KS ci ratio: 3.398387e-02	ci left: 3.926521e-01	ci right 4.062772e-01	k: 7989	n:20000
LILRB3   20000 perm   4 sec   (5425 perm/sec)   p_kst 3.994500e-01   p_cons 4.720000e-02   p_joint 7.215000e-02

Joint ci ratio: 7.953766e-02	ci left: 7.191321e-02	ci right 7.790276e-02	k: 2246	n:30000
Cons ci ratio: 1.003514e-01	ci left: 4.596613e-02	ci right 5.085513e-02	k: 1451	n:30000
KS ci ratio: 2.793745e-02	ci left: 3.906589e-01	ci right 4.017612e-01	k: 11886	n:30000
LILRB3   30000 perm   6 sec   (5169 perm/sec)   p_kst 3.962000e-01   p_cons 4.836667e-02   p_joint 7.486667e-02

Joint ci ratio: 6.337363e-02	ci left: 8.452665e-02	ci right 9.008343e-02	k: 3491	n:40000
Cons ci ratio: 8.611549e-02	ci left: 4.712522e-02	ci right 5.139052e-02	k: 1969	n:40000
KS ci ratio: 2.415200e-02	ci left: 3.922502e-01	ci right 4.018648e-01	k: 15882	n:40000
LILRB3   40000 perm   8 sec   (5001 perm/sec)   p_kst 3.970500e-01   p_cons 4.922500e-02   p_joint 8.727500e-02

Outputting figure to mutsig2_images.part000000000097/LILRB3.2_1951_40000_0.39705_0.049225_0.087275.png
                gene_name: LILRB3
               theta_stop: 0.086 
                    nperm: 40000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.049 
      ci_cons_bounds_left: 0.047 
     ci_cons_bounds_right: 0.051 
                  p_joint: 0.087 
     ci_joint_bounds_left: 0.085 
    ci_joint_bounds_right: 0.090 

Current progress: 30 percent done.
LINGO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.735992e-02	ci left: 1.963361e-01	ci right 2.122365e-01	k: 2042	n:10000
Cons ci ratio: 2.563659e-02	ci left: 6.913143e-01	ci right 7.093688e-01	k: 7004	n:10000
KS ci ratio: 1.158652e-01	ci left: 9.671912e-02	ci right 1.087134e-01	k: 1026	n:10000
LINGO1   10000 perm   2 sec   (5932 perm/sec)   p_kst 1.026000e-01   p_cons 7.004000e-01   p_joint 2.042000e-01

Joint ci ratio: 5.479509e-02	ci left: 1.981367e-01	ci right 2.093496e-01	k: 4074	n:20000
Cons ci ratio: 1.804412e-02	ci left: 6.959592e-01	ci right 7.086819e-01	k: 14047	n:20000
KS ci ratio: 7.922764e-02	ci left: 1.047130e-01	ci right 1.134010e-01	k: 2180	n:20000
LINGO1   20000 perm   4 sec   (5305 perm/sec)   p_kst 1.090000e-01   p_cons 7.023500e-01   p_joint 2.037000e-01

Outputting figure to mutsig2_images.part000000000097/LINGO1.4_1871_20000_0.109_0.70235_0.2037.png
                gene_name: LINGO1
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 33 percent done.
LMOD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.245653e-02	ci left: 4.502943e-01	ci right 4.699290e-01	k: 4601	n:10000
Cons ci ratio: 9.526235e-02	ci left: 1.378591e-01	ci right 1.517485e-01	k: 1447	n:10000
KS ci ratio: 2.544741e-02	ci left: 6.944402e-01	ci right 7.124411e-01	k: 7035	n:10000
LMOD1   10000 perm   2 sec   (5638 perm/sec)   p_kst 7.035000e-01   p_cons 1.447000e-01   p_joint 4.601000e-01

Outputting figure to mutsig2_images.part000000000097/LMOD1.4_1815_10000_0.7035_0.1447_0.4601.png
                gene_name: LMOD1
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 35 percent done.
LILRA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.728142e-02	ci left: 5.151564e-01	ci right 5.348291e-01	k: 5250	n:10000
Cons ci ratio: 8.496310e-02	ci left: 1.679914e-01	ci right 1.829981e-01	k: 1754	n:10000
KS ci ratio: 4.819809e-03	ci left: 9.826368e-01	ci right 9.874746e-01	k: 9852	n:10000
LILRA5   10000 perm   2 sec   (6334 perm/sec)   p_kst 9.852000e-01   p_cons 1.754000e-01   p_joint 5.250000e-01

Outputting figure to mutsig2_images.part000000000097/LILRA5.3_1014_10000_0.9852_0.1754_0.525.png
                gene_name: LILRA5
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.53 

Current progress: 37 percent done.
LIN37
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.474812e-01	ci left: 3.713306e-03	ci right 6.586626e-03	k: 50	n:10000
Cons ci ratio: 1.561224e-01	ci left: 5.465342e-02	ci right 6.400534e-02	k: 592	n:10000
KS ci ratio: 8.756181e-01	ci left: 1.144300e-03	ci right 2.965502e-03	k: 19	n:10000
LIN37   10000 perm   2 sec   (6335 perm/sec)   p_kst 1.900000e-03   p_cons 5.920000e-02   p_joint 5.000000e-03

Joint ci ratio: 3.337509e-01	ci left: 5.708210e-03	ci right 8.038631e-03	k: 136	n:20000
Cons ci ratio: 1.068055e-01	ci left: 5.972022e-02	ci right 6.650747e-02	k: 1261	n:20000
KS ci ratio: 5.836868e-01	ci left: 1.598964e-03	ci right 2.952284e-03	k: 44	n:20000
LIN37   20000 perm   4 sec   (5617 perm/sec)   p_kst 2.200000e-03   p_cons 6.305000e-02   p_joint 6.800000e-03

Joint ci ratio: 3.933177e-01	ci left: 2.652810e-03	ci right 3.979598e-03	k: 98	n:30000
Cons ci ratio: 8.674324e-02	ci left: 6.096215e-02	ci right 6.652270e-02	k: 1911	n:30000
KS ci ratio: 4.748229e-01	ci left: 1.731209e-03	ci right 2.835399e-03	k: 67	n:30000
LIN37   30000 perm   6 sec   (5345 perm/sec)   p_kst 2.233333e-03   p_cons 6.370000e-02   p_joint 3.266667e-03

Joint ci ratio: 3.650115e-01	ci left: 2.351456e-03	ci right 3.422738e-03	k: 114	n:40000
Cons ci ratio: 7.523777e-02	ci left: 6.115403e-02	ci right 6.595957e-02	k: 2541	n:40000
KS ci ratio: 3.820456e-01	ci left: 2.124867e-03	ci right 3.149468e-03	k: 104	n:40000
LIN37   40000 perm   8 sec   (5169 perm/sec)   p_kst 2.600000e-03   p_cons 6.352500e-02   p_joint 2.850000e-03

Joint ci ratio: 5.015933e-01	ci left: 9.158475e-04	ci right 1.544372e-03	k: 60	n:50000
Cons ci ratio: 6.705293e-02	ci left: 6.183067e-02	ci right 6.614012e-02	k: 3198	n:50000
KS ci ratio: 3.839838e-01	ci left: 1.681740e-03	ci right 2.497801e-03	k: 103	n:50000
LIN37   50000 perm   10 sec   (5027 perm/sec)   p_kst 2.060000e-03   p_cons 6.396000e-02   p_joint 1.200000e-03

Joint ci ratio: 5.655722e-01	ci left: 5.756189e-04	ci right 1.041533e-03	k: 47	n:60000
Cons ci ratio: 6.148327e-02	ci left: 6.149585e-02	ci right 6.541317e-02	k: 3806	n:60000
KS ci ratio: 3.574844e-01	ci left: 1.643293e-03	ci right 2.372891e-03	k: 119	n:60000
LIN37   60000 perm   12 sec   (4907 perm/sec)   p_kst 1.983333e-03   p_cons 6.343333e-02   p_joint 7.833333e-04

Joint ci ratio: 5.976065e-01	ci left: 4.324604e-04	ci right 8.109401e-04	k: 42	n:70000
Cons ci ratio: 5.691909e-02	ci left: 6.164809e-02	ci right 6.527392e-02	k: 4441	n:70000
KS ci ratio: 3.383097e-01	ci left: 1.591065e-03	ci right 2.251319e-03	k: 133	n:70000
LIN37   70000 perm   15 sec   (4797 perm/sec)   p_kst 1.900000e-03   p_cons 6.344286e-02   p_joint 6.000000e-04

Joint ci ratio: 5.434261e-01	ci left: 4.746963e-04	ci right 8.381106e-04	k: 51	n:80000
Cons ci ratio: 5.314006e-02	ci left: 6.199259e-02	ci right 6.538913e-02	k: 5094	n:80000
KS ci ratio: 3.166081e-01	ci left: 1.610181e-03	ci right 2.226838e-03	k: 152	n:80000
LIN37   80000 perm   17 sec   (4696 perm/sec)   p_kst 1.900000e-03   p_cons 6.367500e-02   p_joint 6.375000e-04

Joint ci ratio: 4.436578e-01	ci left: 6.752482e-04	ci right 1.069183e-03	k: 77	n:90000
Cons ci ratio: 5.025035e-02	ci left: 6.173965e-02	ci right 6.493301e-02	k: 5699	n:90000
KS ci ratio: 2.804112e-01	ci left: 1.863151e-03	ci right 2.480750e-03	k: 194	n:90000
LIN37   90000 perm   20 sec   (4604 perm/sec)   p_kst 2.155556e-03   p_cons 6.332222e-02   p_joint 8.555556e-04

Joint ci ratio: 4.380918e-01	ci left: 6.254988e-04	ci right 9.844799e-04	k: 79	n:100000
Cons ci ratio: 4.760085e-02	ci left: 6.199624e-02	ci right 6.502913e-02	k: 6350	n:100000
KS ci ratio: 2.676775e-01	ci left: 1.853786e-03	ci right 2.435696e-03	k: 213	n:100000
LIN37   100000 perm   22 sec   (4515 perm/sec)   p_kst 2.130000e-03   p_cons 6.350000e-02   p_joint 7.900000e-04

Joint ci ratio: 4.381079e-01	ci left: 5.686313e-04	ci right 8.949897e-04	k: 79	n:110000
Cons ci ratio: 4.538946e-02	ci left: 6.205689e-02	ci right 6.494800e-02	k: 6984	n:110000
KS ci ratio: 2.559845e-01	ci left: 1.855150e-03	ci right 2.407990e-03	k: 233	n:110000
LIN37   110000 perm   25 sec   (4429 perm/sec)   p_kst 2.118182e-03   p_cons 6.349091e-02   p_joint 7.181818e-04

Joint ci ratio: 4.275556e-01	ci left: 5.509451e-04	ci right 8.573538e-04	k: 83	n:120000
Cons ci ratio: 4.346625e-02	ci left: 6.209366e-02	ci right 6.486082e-02	k: 7616	n:120000
KS ci ratio: 2.466763e-01	ci left: 1.841107e-03	ci right 2.366753e-03	k: 251	n:120000
LIN37   120000 perm   28 sec   (4357 perm/sec)   p_kst 2.091667e-03   p_cons 6.346667e-02   p_joint 6.916667e-04

Joint ci ratio: 3.423181e-01	ci left: 8.355629e-04	ci right 1.187308e-03	k: 130	n:130000
Cons ci ratio: 4.176577e-02	ci left: 6.213458e-02	ci right 6.479262e-02	k: 8249	n:130000
KS ci ratio: 2.374352e-01	ci left: 1.844002e-03	ci right 2.347852e-03	k: 271	n:130000
LIN37   130000 perm   30 sec   (4285 perm/sec)   p_kst 2.084615e-03   p_cons 6.345385e-02   p_joint 1.000000e-03

Joint ci ratio: 3.788145e-01	ci left: 6.199269e-04	ci right 9.156698e-04	k: 106	n:140000
Cons ci ratio: 4.021900e-02	ci left: 6.226346e-02	ci right 6.482608e-02	k: 8895	n:140000
KS ci ratio: 2.287683e-01	ci left: 1.853531e-03	ci right 2.338890e-03	k: 292	n:140000
LIN37   140000 perm   33 sec   (4219 perm/sec)   p_kst 2.085714e-03   p_cons 6.353571e-02   p_joint 7.571429e-04

Joint ci ratio: 3.736190e-01	ci left: 5.967057e-04	ci right 8.765106e-04	k: 109	n:150000
Cons ci ratio: 3.884531e-02	ci left: 6.233709e-02	ci right 6.481314e-02	k: 9535	n:150000
KS ci ratio: 2.206342e-01	ci left: 1.868377e-03	ci right 2.337868e-03	k: 314	n:150000
LIN37   150000 perm   36 sec   (4154 perm/sec)   p_kst 2.093333e-03   p_cons 6.356667e-02   p_joint 7.266667e-04

Joint ci ratio: 3.654094e-01	ci left: 5.877595e-04	ci right 8.558688e-04	k: 114	n:160000
Cons ci ratio: 3.759945e-02	ci left: 6.241522e-02	ci right 6.481313e-02	k: 10177	n:160000
KS ci ratio: 2.139475e-01	ci left: 1.869802e-03	ci right 2.323543e-03	k: 334	n:160000
LIN37   160000 perm   39 sec   (4090 perm/sec)   p_kst 2.087500e-03   p_cons 6.360625e-02   p_joint 7.125000e-04

Joint ci ratio: 3.880202e-01	ci left: 4.839438e-04	ci right 7.218607e-04	k: 101	n:170000
Cons ci ratio: 3.640341e-02	ci left: 6.268940e-02	ci right 6.501962e-02	k: 10854	n:170000
KS ci ratio: 2.084232e-01	ci left: 1.860096e-03	ci right 2.298339e-03	k: 352	n:170000
LIN37   170000 perm   42 sec   (4028 perm/sec)   p_kst 2.070588e-03   p_cons 6.384706e-02   p_joint 5.941176e-04

Joint ci ratio: 4.327918e-01	ci left: 3.573805e-04	ci right 5.592783e-04	k: 81	n:180000
Cons ci ratio: 3.545283e-02	ci left: 6.247137e-02	ci right 6.473160e-02	k: 11447	n:180000
KS ci ratio: 2.027589e-01	ci left: 1.862149e-03	ci right 2.287476e-03	k: 372	n:180000
LIN37   180000 perm   45 sec   (3968 perm/sec)   p_kst 2.066667e-03   p_cons 6.359444e-02   p_joint 4.500000e-04

Joint ci ratio: 4.409416e-01	ci left: 3.245171e-04	ci right 5.123293e-04	k: 78	n:190000
Cons ci ratio: 3.458833e-02	ci left: 6.222480e-02	ci right 6.442012e-02	k: 12030	n:190000
KS ci ratio: 1.960388e-01	ci left: 1.894156e-03	ci right 2.310743e-03	k: 398	n:190000
LIN37   190000 perm   49 sec   (3910 perm/sec)   p_kst 2.094737e-03   p_cons 6.331579e-02   p_joint 4.105263e-04

Joint ci ratio: 4.328017e-01	ci left: 3.216411e-04	ci right 5.033533e-04	k: 81	n:200000
Cons ci ratio: 3.369722e-02	ci left: 6.230611e-02	ci right 6.444657e-02	k: 12674	n:200000
KS ci ratio: 1.894990e-01	ci left: 1.932697e-03	ci right 2.341948e-03	k: 426	n:200000
LIN37   200000 perm   52 sec   (3853 perm/sec)   p_kst 2.130000e-03   p_cons 6.337000e-02   p_joint 4.050000e-04

Joint ci ratio: 2.904431e-01	ci left: 7.409522e-04	ci right 9.969584e-04	k: 181	n:210000
Cons ci ratio: 3.289007e-02	ci left: 6.231418e-02	ci right 6.440266e-02	k: 13304	n:210000
KS ci ratio: 1.858378e-01	ci left: 1.917811e-03	ci right 2.315180e-03	k: 443	n:210000
LIN37   210000 perm   55 sec   (3792 perm/sec)   p_kst 2.109524e-03   p_cons 6.335238e-02   p_joint 8.619048e-04

Joint ci ratio: 2.996527e-01	ci left: 6.609678e-04	ci right 8.979595e-04	k: 170	n:220000
Cons ci ratio: 3.212966e-02	ci left: 6.235365e-02	ci right 6.439424e-02	k: 13941	n:220000
KS ci ratio: 1.810088e-01	ci left: 1.934722e-03	ci right 2.324036e-03	k: 467	n:220000
LIN37   220000 perm   59 sec   (3739 perm/sec)   p_kst 2.122727e-03   p_cons 6.336818e-02   p_joint 7.727273e-04

Joint ci ratio: 2.945312e-01	ci left: 6.563728e-04	ci right 8.869437e-04	k: 176	n:230000
Cons ci ratio: 3.144615e-02	ci left: 6.229093e-02	ci right 6.428532e-02	k: 14555	n:230000
KS ci ratio: 1.783635e-01	ci left: 1.908733e-03	ci right 2.286599e-03	k: 481	n:230000
LIN37   230000 perm   62 sec   (3688 perm/sec)   p_kst 2.091304e-03   p_cons 6.328261e-02   p_joint 7.652174e-04

Joint ci ratio: 2.937068e-01	ci left: 6.328820e-04	ci right 8.544628e-04	k: 177	n:240000
Cons ci ratio: 3.077526e-02	ci left: 6.234555e-02	ci right 6.429835e-02	k: 15196	n:240000
KS ci ratio: 1.754767e-01	ci left: 1.892916e-03	ci right 2.260942e-03	k: 497	n:240000
LIN37   240000 perm   66 sec   (3625 perm/sec)   p_kst 2.070833e-03   p_cons 6.331667e-02   p_joint 7.375000e-04

Joint ci ratio: 3.243261e-01	ci left: 4.894606e-04	ci right 6.824243e-04	k: 145	n:250000
Cons ci ratio: 3.015776e-02	ci left: 6.234856e-02	ci right 6.426158e-02	k: 15825	n:250000
KS ci ratio: 1.727256e-01	ci left: 1.878409e-03	ci right 2.237292e-03	k: 513	n:250000
LIN37   250000 perm   70 sec   (3576 perm/sec)   p_kst 2.052000e-03   p_cons 6.330000e-02   p_joint 5.800000e-04

Joint ci ratio: 3.623219e-01	ci left: 3.686791e-04	ci right 5.350952e-04	k: 116	n:260000
Cons ci ratio: 2.958175e-02	ci left: 6.232878e-02	ci right 6.420405e-02	k: 16448	n:260000
KS ci ratio: 1.685143e-01	ci left: 1.901895e-03	ci right 2.255506e-03	k: 539	n:260000
LIN37   260000 perm   74 sec   (3526 perm/sec)   p_kst 2.073077e-03   p_cons 6.326154e-02   p_joint 4.461538e-04

Joint ci ratio: 3.577652e-01	ci left: 3.651303e-04	ci right 5.273891e-04	k: 119	n:270000
Cons ci ratio: 2.901758e-02	ci left: 6.239172e-02	ci right 6.423248e-02	k: 17093	n:270000
KS ci ratio: 1.648890e-01	ci left: 1.916636e-03	ci right 2.264561e-03	k: 563	n:270000
LIN37   270000 perm   78 sec   (3479 perm/sec)   p_kst 2.085185e-03   p_cons 6.330741e-02   p_joint 4.407407e-04

Joint ci ratio: 3.505366e-01	ci left: 3.683587e-04	ci right 5.279929e-04	k: 124	n:280000
Cons ci ratio: 2.851111e-02	ci left: 6.234050e-02	ci right 6.414712e-02	k: 17707	n:280000
KS ci ratio: 1.621804e-01	ci left: 1.913264e-03	ci right 2.254316e-03	k: 582	n:280000
LIN37   280000 perm   82 sec   (3434 perm/sec)   p_kst 2.078571e-03   p_cons 6.323929e-02   p_joint 4.428571e-04

Joint ci ratio: 3.450594e-01	ci left: 3.682450e-04	ci right 5.247796e-04	k: 128	n:290000
Cons ci ratio: 2.804170e-02	ci left: 6.224512e-02	ci right 6.401880e-02	k: 18307	n:290000
KS ci ratio: 1.597341e-01	ci left: 1.906858e-03	ci right 2.241149e-03	k: 600	n:290000
LIN37   290000 perm   86 sec   (3391 perm/sec)   p_kst 2.068966e-03   p_cons 6.312759e-02   p_joint 4.413793e-04

Joint ci ratio: 2.578173e-01	ci left: 6.708106e-04	ci right 8.723686e-04	k: 230	n:300000
Cons ci ratio: 2.753805e-02	ci left: 6.239809e-02	ci right 6.414369e-02	k: 18980	n:300000
KS ci ratio: 1.571410e-01	ci left: 1.907320e-03	ci right 2.235751e-03	k: 620	n:300000
LIN37   300000 perm   90 sec   (3348 perm/sec)   p_kst 2.066667e-03   p_cons 6.326667e-02   p_joint 7.666667e-04

Joint ci ratio: 2.513691e-01	ci left: 6.854123e-04	ci right 8.854009e-04	k: 242	n:310000
Cons ci ratio: 2.709592e-02	ci left: 6.238760e-02	ci right 6.410445e-02	k: 19605	n:310000
KS ci ratio: 1.541889e-01	ci left: 1.920198e-03	ci right 2.244062e-03	k: 644	n:310000
LIN37   310000 perm   94 sec   (3307 perm/sec)   p_kst 2.077419e-03   p_cons 6.324194e-02   p_joint 7.806452e-04

Joint ci ratio: 2.589478e-01	ci left: 6.230376e-04	ci right 8.111948e-04	k: 228	n:320000
Cons ci ratio: 2.666177e-02	ci left: 6.243388e-02	ci right 6.412404e-02	k: 20248	n:320000
KS ci ratio: 1.506097e-01	ci left: 1.953376e-03	ci right 2.274498e-03	k: 675	n:320000
LIN37   320000 perm   98 sec   (3264 perm/sec)   p_kst 2.109375e-03   p_cons 6.327500e-02   p_joint 7.125000e-04

Joint ci ratio: 2.556212e-01	ci left: 6.211670e-04	ci right 8.059650e-04	k: 234	n:330000
Cons ci ratio: 2.625187e-02	ci left: 6.245948e-02	ci right 6.412396e-02	k: 20885	n:330000
KS ci ratio: 1.485372e-01	ci left: 1.949603e-03	ci right 2.265303e-03	k: 694	n:330000
LIN37   330000 perm   102 sec   (3225 perm/sec)   p_kst 2.103030e-03   p_cons 6.328788e-02   p_joint 7.090909e-04

Joint ci ratio: 2.672568e-01	ci left: 5.479238e-04	ci right 7.195965e-04	k: 214	n:340000
Cons ci ratio: 2.584557e-02	ci left: 6.255101e-02	ci right 6.419174e-02	k: 21545	n:340000
KS ci ratio: 1.461383e-01	ci left: 1.957416e-03	ci right 2.268815e-03	k: 717	n:340000
LIN37   340000 perm   107 sec   (3188 perm/sec)   p_kst 2.108824e-03   p_cons 6.336765e-02   p_joint 6.294118e-04

Joint ci ratio: 2.630093e-01	ci left: 5.509398e-04	ci right 7.203626e-04	k: 221	n:350000
Cons ci ratio: 2.546124e-02	ci left: 6.262045e-02	ci right 6.423822e-02	k: 22199	n:350000
KS ci ratio: 1.437549e-01	ci left: 1.967575e-03	ci right 2.275047e-03	k: 741	n:350000
LIN37   350000 perm   111 sec   (3148 perm/sec)   p_kst 2.117143e-03   p_cons 6.342571e-02   p_joint 6.314286e-04

Joint ci ratio: 2.112509e-01	ci left: 8.546441e-04	ci right 1.059081e-03	k: 343	n:360000
Cons ci ratio: 2.511468e-02	ci left: 6.258679e-02	ci right 6.418136e-02	k: 22817	n:360000
KS ci ratio: 1.412997e-01	ci left: 1.982568e-03	ci right 2.286646e-03	k: 767	n:360000
LIN37   360000 perm   116 sec   (3112 perm/sec)   p_kst 2.130556e-03   p_cons 6.338056e-02   p_joint 9.527778e-04

Joint ci ratio: 2.085407e-01	ci left: 8.545914e-04	ci right 1.056059e-03	k: 352	n:370000
Cons ci ratio: 2.478360e-02	ci left: 6.254703e-02	ci right 6.411928e-02	k: 23432	n:370000
KS ci ratio: 1.394952e-01	ci left: 1.981140e-03	ci right 2.280797e-03	k: 787	n:370000
LIN37   370000 perm   120 sec   (3076 perm/sec)   p_kst 2.127027e-03   p_cons 6.332973e-02   p_joint 9.513514e-04

Joint ci ratio: 2.187003e-01	ci left: 7.523897e-04	ci right 9.395673e-04	k: 320	n:380000
Cons ci ratio: 2.444466e-02	ci left: 6.260892e-02	ci right 6.416090e-02	k: 24085	n:380000
KS ci ratio: 1.372485e-01	ci left: 1.995058e-03	ci right 2.291563e-03	k: 813	n:380000
LIN37   380000 perm   125 sec   (3041 perm/sec)   p_kst 2.139474e-03   p_cons 6.338158e-02   p_joint 8.421053e-04

Joint ci ratio: 2.153710e-01	ci left: 7.573452e-04	ci right 9.425082e-04	k: 330	n:390000
Cons ci ratio: 2.414219e-02	ci left: 6.255559e-02	ci right 6.408680e-02	k: 24694	n:390000
KS ci ratio: 1.358382e-01	ci left: 1.986003e-03	ci right 2.277883e-03	k: 830	n:390000
LIN37   390000 perm   130 sec   (3006 perm/sec)   p_kst 2.128205e-03   p_cons 6.331795e-02   p_joint 8.461538e-04

Joint ci ratio: 2.144030e-01	ci left: 7.455075e-04	ci right 9.268492e-04	k: 333	n:400000
Cons ci ratio: 2.382455e-02	ci left: 6.263432e-02	ci right 6.414701e-02	k: 25355	n:400000
KS ci ratio: 1.345499e-01	ci left: 1.974999e-03	ci right 2.262289e-03	k: 846	n:400000
LIN37   400000 perm   135 sec   (2972 perm/sec)   p_kst 2.115000e-03   p_cons 6.338750e-02   p_joint 8.325000e-04

Joint ci ratio: 2.115713e-01	ci left: 7.481048e-04	ci right 9.273634e-04	k: 342	n:410000
Cons ci ratio: 2.352491e-02	ci left: 6.268023e-02	ci right 6.417473e-02	k: 26004	n:410000
KS ci ratio: 1.328357e-01	ci left: 1.978693e-03	ci right 2.262564e-03	k: 868	n:410000
LIN37   410000 perm   139 sec   (2939 perm/sec)   p_kst 2.117073e-03   p_cons 6.342439e-02   p_joint 8.341463e-04

Joint ci ratio: 2.166918e-01	ci left: 6.942381e-04	ci right 8.651514e-04	k: 326	n:420000
Cons ci ratio: 2.322887e-02	ci left: 6.276195e-02	ci right 6.423932e-02	k: 26669	n:420000
KS ci ratio: 1.313332e-01	ci left: 1.977626e-03	ci right 2.257885e-03	k: 888	n:420000
LIN37   420000 perm   144 sec   (2908 perm/sec)   p_kst 2.114286e-03   p_cons 6.349762e-02   p_joint 7.761905e-04

Joint ci ratio: 2.147312e-01	ci left: 6.912926e-04	ci right 8.597379e-04	k: 332	n:430000
Cons ci ratio: 2.295942e-02	ci left: 6.275902e-02	ci right 6.421896e-02	k: 27299	n:430000
KS ci ratio: 1.299522e-01	ci left: 1.974377e-03	ci right 2.251005e-03	k: 907	n:430000
LIN37   430000 perm   150 sec   (2876 perm/sec)   p_kst 2.109302e-03   p_cons 6.348605e-02   p_joint 7.720930e-04

Joint ci ratio: 2.266222e-01	ci left: 6.025733e-04	ci right 7.586690e-04	k: 298	n:440000
Cons ci ratio: 2.270869e-02	ci left: 6.270659e-02	ci right 6.414917e-02	k: 27907	n:440000
KS ci ratio: 1.282677e-01	ci left: 1.982289e-03	ci right 2.256152e-03	k: 931	n:440000
LIN37   440000 perm   155 sec   (2843 perm/sec)   p_kst 2.115909e-03   p_cons 6.342500e-02   p_joint 6.772727e-04

Joint ci ratio: 2.034321e-01	ci left: 7.405966e-04	ci right 9.103812e-04	k: 370	n:450000
Cons ci ratio: 2.246810e-02	ci left: 6.264552e-02	ci right 6.407122e-02	k: 28510	n:450000
KS ci ratio: 1.267799e-01	ci left: 1.985567e-03	ci right 2.256463e-03	k: 953	n:450000
LIN37   450000 perm   160 sec   (2812 perm/sec)   p_kst 2.117778e-03   p_cons 6.335556e-02   p_joint 8.222222e-04

Joint ci ratio: 2.020757e-01	ci left: 7.348142e-04	ci right 9.020113e-04	k: 375	n:460000
Cons ci ratio: 2.222318e-02	ci left: 6.264989e-02	ci right 6.405996e-02	k: 29142	n:460000
KS ci ratio: 1.255363e-01	ci left: 1.982404e-03	ci right 2.250017e-03	k: 972	n:460000
LIN37   460000 perm   165 sec   (2781 perm/sec)   p_kst 2.113043e-03   p_cons 6.335217e-02   p_joint 8.152174e-04

Joint ci ratio: 2.004829e-01	ci left: 7.313023e-04	ci right 8.962283e-04	k: 381	n:470000
Cons ci ratio: 2.199320e-02	ci left: 6.261607e-02	ci right 6.401060e-02	k: 29756	n:470000
KS ci ratio: 1.245174e-01	ci left: 1.973202e-03	ci right 2.237251e-03	k: 988	n:470000
LIN37   470000 perm   171 sec   (2752 perm/sec)   p_kst 2.102128e-03   p_cons 6.331064e-02   p_joint 8.106383e-04

Joint ci ratio: 1.984161e-01	ci left: 7.319012e-04	ci right 8.950547e-04	k: 389	n:480000
Cons ci ratio: 2.175683e-02	ci left: 6.265627e-02	ci right 6.403651e-02	k: 30405	n:480000
KS ci ratio: 1.233386e-01	ci left: 1.970450e-03	ci right 2.231452e-03	k: 1007	n:480000
LIN37   480000 perm   176 sec   (2723 perm/sec)   p_kst 2.097917e-03   p_cons 6.334375e-02   p_joint 8.104167e-04

Joint ci ratio: 1.959198e-01	ci left: 7.363654e-04	ci right 8.982024e-04	k: 399	n:490000
Cons ci ratio: 2.153311e-02	ci left: 6.266647e-02	ci right 6.403257e-02	k: 31040	n:490000
KS ci ratio: 1.221330e-01	ci left: 1.969800e-03	ci right 2.227981e-03	k: 1027	n:490000
LIN37   490000 perm   182 sec   (2696 perm/sec)   p_kst 2.095918e-03   p_cons 6.334694e-02   p_joint 8.142857e-04

Joint ci ratio: 1.944671e-01	ci left: 7.330515e-04	ci right 8.928243e-04	k: 405	n:500000
Cons ci ratio: 2.131687e-02	ci left: 6.267236e-02	ci right 6.402470e-02	k: 31673	n:500000
KS ci ratio: 1.210779e-01	ci left: 1.965308e-03	ci right 2.220516e-03	k: 1045	n:500000
LIN37   500000 perm   187 sec   (2668 perm/sec)   p_kst 2.090000e-03   p_cons 6.334600e-02   p_joint 8.100000e-04

Joint ci ratio: 1.969107e-01	ci left: 7.000295e-04	ci right 8.547522e-04	k: 395	n:510000
Cons ci ratio: 2.111294e-02	ci left: 6.264492e-02	ci right 6.398358e-02	k: 32289	n:510000
KS ci ratio: 1.202765e-01	ci left: 1.953394e-03	ci right 2.205257e-03	k: 1059	n:510000
LIN37   510000 perm   193 sec   (2640 perm/sec)   p_kst 2.076471e-03   p_cons 6.331176e-02   p_joint 7.745098e-04

Joint ci ratio: 1.695477e-01	ci left: 9.398568e-04	ci right 1.115779e-03	k: 533	n:520000
Cons ci ratio: 2.090967e-02	ci left: 6.264729e-02	ci right 6.397296e-02	k: 32920	n:520000
KS ci ratio: 1.191578e-01	ci left: 1.953139e-03	ci right 2.202461e-03	k: 1079	n:520000
LIN37   520000 perm   199 sec   (2615 perm/sec)   p_kst 2.075000e-03   p_cons 6.330769e-02   p_joint 1.025000e-03

Joint ci ratio: 1.697085e-01	ci left: 9.203162e-04	ci right 1.092761e-03	k: 532	n:530000
Cons ci ratio: 2.072041e-02	ci left: 6.260270e-02	ci right 6.391529e-02	k: 33526	n:530000
KS ci ratio: 1.176949e-01	ci left: 1.965722e-03	ci right 2.213356e-03	k: 1106	n:530000
LIN37   530000 perm   205 sec   (2589 perm/sec)   p_kst 2.086792e-03   p_cons 6.325660e-02   p_joint 1.003774e-03

Joint ci ratio: 1.686054e-01	ci left: 9.156873e-04	ci right 1.086036e-03	k: 539	n:540000
Cons ci ratio: 2.052880e-02	ci left: 6.260220e-02	ci right 6.390249e-02	k: 34155	n:540000
KS ci ratio: 1.166979e-01	ci left: 1.963473e-03	ci right 2.208584e-03	k: 1125	n:540000
LIN37   540000 perm   211 sec   (2562 perm/sec)   p_kst 2.083333e-03   p_cons 6.325000e-02   p_joint 9.981481e-04

Joint ci ratio: 1.666114e-01	ci left: 9.216835e-04	ci right 1.090916e-03	k: 552	n:550000
Cons ci ratio: 2.035992e-02	ci left: 6.250043e-02	ci right 6.378781e-02	k: 34728	n:550000
KS ci ratio: 1.155238e-01	ci left: 1.968378e-03	ci right 2.211460e-03	k: 1148	n:550000
LIN37   550000 perm   217 sec   (2538 perm/sec)   p_kst 2.087273e-03   p_cons 6.314182e-02   p_joint 1.003636e-03

Joint ci ratio: 1.646865e-01	ci left: 9.274771e-04	ci right 1.095611e-03	k: 565	n:560000
Cons ci ratio: 2.017319e-02	ci left: 6.253031e-02	ci right 6.380636e-02	k: 35373	n:560000
KS ci ratio: 1.143844e-01	ci left: 1.973119e-03	ci right 2.214221e-03	k: 1171	n:560000
LIN37   560000 perm   223 sec   (2513 perm/sec)   p_kst 2.091071e-03   p_cons 6.316607e-02   p_joint 1.008929e-03

Joint ci ratio: 1.622666e-01	ci left: 9.398105e-04	ci right 1.107433e-03	k: 582	n:570000
Cons ci ratio: 1.999743e-02	ci left: 6.252427e-02	ci right 6.378895e-02	k: 35998	n:570000
KS ci ratio: 1.130886e-01	ci left: 1.984524e-03	ci right 2.224090e-03	k: 1198	n:570000
LIN37   570000 perm   229 sec   (2487 perm/sec)   p_kst 2.101754e-03   p_cons 6.315439e-02   p_joint 1.021053e-03

Joint ci ratio: 1.811288e-01	ci left: 7.338183e-04	ci right 8.815862e-04	k: 467	n:580000
Cons ci ratio: 1.982041e-02	ci left: 6.255281e-02	ci right 6.380673e-02	k: 36643	n:580000
KS ci ratio: 1.119732e-01	ci left: 1.990523e-03	ci right 2.228287e-03	k: 1222	n:580000
LIN37   580000 perm   236 sec   (2462 perm/sec)   p_kst 2.106897e-03   p_cons 6.317759e-02   p_joint 8.051724e-04

Joint ci ratio: 1.801694e-01	ci left: 7.294719e-04	ci right 8.755017e-04	k: 472	n:590000
Cons ci ratio: 1.965335e-02	ci left: 6.254837e-02	ci right 6.379152e-02	k: 37269	n:590000
KS ci ratio: 1.110688e-01	ci left: 1.989738e-03	ci right 2.225363e-03	k: 1242	n:590000
LIN37   590000 perm   242 sec   (2439 perm/sec)   p_kst 2.105085e-03   p_cons 6.316780e-02   p_joint 8.000000e-04

Joint ci ratio: 1.794130e-01	ci left: 7.236805e-04	ci right 8.678766e-04	k: 476	n:600000
Cons ci ratio: 1.948139e-02	ci left: 6.259887e-02	ci right 6.383202e-02	k: 37928	n:600000
KS ci ratio: 1.104933e-01	ci left: 1.977642e-03	ci right 2.210541e-03	k: 1255	n:600000
LIN37   600000 perm   248 sec   (2416 perm/sec)   p_kst 2.091667e-03   p_cons 6.321333e-02   p_joint 7.933333e-04

Joint ci ratio: 1.799814e-01	ci left: 7.071195e-04	ci right 8.485109e-04	k: 473	n:610000
Cons ci ratio: 1.933474e-02	ci left: 6.252047e-02	ci right 6.374270e-02	k: 38509	n:610000
KS ci ratio: 1.096671e-01	ci left: 1.975511e-03	ci right 2.206308e-03	k: 1274	n:610000
LIN37   610000 perm   255 sec   (2394 perm/sec)   p_kst 2.088525e-03   p_cons 6.312951e-02   p_joint 7.754098e-04

Joint ci ratio: 1.794153e-01	ci left: 7.003352e-04	ci right 8.398816e-04	k: 476	n:620000
Cons ci ratio: 1.918010e-02	ci left: 6.251368e-02	ci right 6.372589e-02	k: 39133	n:620000
KS ci ratio: 1.091554e-01	ci left: 1.962473e-03	ci right 2.190607e-03	k: 1286	n:620000
LIN37   620000 perm   261 sec   (2373 perm/sec)   p_kst 2.074194e-03   p_cons 6.311774e-02   p_joint 7.677419e-04

Joint ci ratio: 1.775633e-01	ci left: 7.043828e-04	ci right 8.431314e-04	k: 486	n:630000
Cons ci ratio: 1.902706e-02	ci left: 6.251978e-02	ci right 6.372234e-02	k: 39765	n:630000
KS ci ratio: 1.081101e-01	ci left: 1.969927e-03	ci right 2.196595e-03	k: 1311	n:630000
LIN37   630000 perm   268 sec   (2352 perm/sec)   p_kst 2.080952e-03   p_cons 6.311905e-02   p_joint 7.714286e-04

Joint ci ratio: 1.891958e-01	ci left: 6.069046e-04	ci right 7.351851e-04	k: 428	n:640000
Cons ci ratio: 1.887115e-02	ci left: 6.256618e-02	ci right 6.375966e-02	k: 40423	n:640000
KS ci ratio: 1.070541e-01	ci left: 1.978679e-03	ci right 2.203991e-03	k: 1337	n:640000
LIN37   640000 perm   275 sec   (2331 perm/sec)   p_kst 2.089063e-03   p_cons 6.316094e-02   p_joint 6.687500e-04

Joint ci ratio: 1.874558e-01	ci left: 6.092952e-04	ci right 7.367617e-04	k: 436	n:650000
Cons ci ratio: 1.872849e-02	ci left: 6.255145e-02	ci right 6.373553e-02	k: 41042	n:650000
KS ci ratio: 1.061455e-01	ci left: 1.982679e-03	ci right 2.206411e-03	k: 1360	n:650000
LIN37   650000 perm   281 sec   (2311 perm/sec)   p_kst 2.092308e-03   p_cons 6.314154e-02   p_joint 6.707692e-04

Joint ci ratio: 1.885392e-01	ci left: 5.928437e-04	ci right 7.176674e-04	k: 431	n:660000
Cons ci ratio: 1.859094e-02	ci left: 6.252513e-02	ci right 6.369992e-02	k: 41653	n:660000
KS ci ratio: 1.051835e-01	ci left: 1.989517e-03	ci right 2.211859e-03	k: 1385	n:660000
LIN37   660000 perm   288 sec   (2292 perm/sec)   p_kst 2.098485e-03   p_cons 6.311061e-02   p_joint 6.530303e-04

Joint ci ratio: 1.976797e-01	ci left: 5.285972e-04	ci right 6.459402e-04	k: 392	n:670000
Cons ci ratio: 1.845450e-02	ci left: 6.251151e-02	ci right 6.367734e-02	k: 42272	n:670000
KS ci ratio: 1.044328e-01	ci left: 1.988891e-03	ci right 2.209479e-03	k: 1405	n:670000
LIN37   670000 perm   295 sec   (2273 perm/sec)   p_kst 2.097015e-03   p_cons 6.309254e-02   p_joint 5.850746e-04

Joint ci ratio: 1.959422e-01	ci left: 5.306106e-04	ci right 6.472417e-04	k: 399	n:680000
Cons ci ratio: 1.832672e-02	ci left: 6.246172e-02	ci right 6.361847e-02	k: 42866	n:680000
KS ci ratio: 1.035162e-01	ci left: 1.995451e-03	ci right 2.214707e-03	k: 1430	n:680000
LIN37   680000 perm   302 sec   (2254 perm/sec)   p_kst 2.102941e-03   p_cons 6.303824e-02   p_joint 5.867647e-04

Joint ci ratio: 1.944889e-01	ci left: 5.311913e-04	ci right 6.469815e-04	k: 405	n:690000
Cons ci ratio: 1.819308e-02	ci left: 6.246824e-02	ci right 6.361659e-02	k: 43498	n:690000
KS ci ratio: 1.030498e-01	ci left: 1.984885e-03	ci right 2.201938e-03	k: 1443	n:690000
LIN37   690000 perm   309 sec   (2235 perm/sec)   p_kst 2.091304e-03   p_cons 6.304058e-02   p_joint 5.869565e-04

Joint ci ratio: 1.930676e-01	ci left: 5.317584e-04	ci right 6.467256e-04	k: 411	n:700000
Cons ci ratio: 1.806363e-02	ci left: 6.246607e-02	ci right 6.360612e-02	k: 44124	n:700000
KS ci ratio: 1.020298e-01	ci left: 1.996896e-03	ci right 2.212971e-03	k: 1472	n:700000
LIN37   700000 perm   316 sec   (2217 perm/sec)   p_kst 2.102857e-03   p_cons 6.303429e-02   p_joint 5.871429e-04

Joint ci ratio: 1.921374e-01	ci left: 5.296310e-04	ci right 6.435220e-04	k: 415	n:710000
Cons ci ratio: 1.793134e-02	ci left: 6.250045e-02	ci right 6.363269e-02	k: 44776	n:710000
KS ci ratio: 1.014464e-01	ci left: 1.992105e-03	ci right 2.206356e-03	k: 1489	n:710000
LIN37   710000 perm   323 sec   (2198 perm/sec)   p_kst 2.097183e-03   p_cons 6.306479e-02   p_joint 5.845070e-04

Joint ci ratio: 1.930691e-01	ci left: 5.169870e-04	ci right 6.287616e-04	k: 411	n:720000
Cons ci ratio: 1.780213e-02	ci left: 6.253253e-02	ci right 6.365710e-02	k: 45427	n:720000
KS ci ratio: 1.006722e-01	ci left: 1.995574e-03	ci right 2.208463e-03	k: 1512	n:720000
LIN37   720000 perm   330 sec   (2181 perm/sec)   p_kst 2.100000e-03   p_cons 6.309306e-02   p_joint 5.708333e-04

Joint ci ratio: 1.909939e-01	ci left: 5.216411e-04	ci right 6.330690e-04	k: 420	n:730000
Cons ci ratio: 1.767587e-02	ci left: 6.256239e-02	ci right 6.367944e-02	k: 46077	n:730000
KS ci ratio: 1.000461e-01	ci left: 1.993612e-03	ci right 2.204891e-03	k: 1531	n:730000
LIN37   730000 perm   337 sec   (2164 perm/sec)   p_kst 2.097260e-03   p_cons 6.311918e-02   p_joint 5.753425e-04

Joint ci ratio: 1.900932e-01	ci left: 5.197394e-04	ci right 6.301770e-04	k: 424	n:740000
Cons ci ratio: 1.755527e-02	ci left: 6.257128e-02	ci right 6.368079e-02	k: 46712	n:740000
KS ci ratio: 9.956030e-02	ci left: 1.986435e-03	ci right 2.195872e-03	k: 1546	n:740000
LIN37   740000 perm   345 sec   (2147 perm/sec)   p_kst 2.089189e-03   p_cons 6.312432e-02   p_joint 5.729730e-04

Joint ci ratio: 1.887654e-01	ci left: 5.204302e-04	ci right 6.301536e-04	k: 430	n:750000
Cons ci ratio: 1.743554e-02	ci left: 6.259058e-02	ci right 6.369279e-02	k: 47355	n:750000
KS ci ratio: 9.885976e-02	ci left: 1.988555e-03	ci right 2.196654e-03	k: 1568	n:750000
LIN37   750000 perm   352 sec   (2130 perm/sec)   p_kst 2.090667e-03   p_cons 6.314000e-02   p_joint 5.733333e-04

Joint ci ratio: 1.874650e-01	ci left: 5.211054e-04	ci right 6.301282e-04	k: 436	n:760000
Cons ci ratio: 1.732304e-02	ci left: 6.257664e-02	ci right 6.367143e-02	k: 47973	n:760000
KS ci ratio: 9.823570e-02	ci left: 1.988057e-03	ci right 2.194715e-03	k: 1588	n:760000
LIN37   760000 perm   360 sec   (2113 perm/sec)   p_kst 2.089474e-03   p_cons 6.312237e-02   p_joint 5.736842e-04

Joint ci ratio: 1.855635e-01	ci left: 5.254805e-04	ci right 6.341780e-04	k: 445	n:770000
Cons ci ratio: 1.719871e-02	ci left: 6.265881e-02	ci right 6.374708e-02	k: 48665	n:770000
KS ci ratio: 9.753224e-02	ci left: 1.991377e-03	ci right 2.196813e-03	k: 1611	n:770000
LIN37   770000 perm   367 sec   (2096 perm/sec)   p_kst 2.092208e-03   p_cons 6.320130e-02   p_joint 5.779221e-04

Joint ci ratio: 2.007785e-01	ci left: 4.394321e-04	ci right 5.386978e-04	k: 380	n:780000
Cons ci ratio: 1.708829e-02	ci left: 6.266100e-02	ci right 6.374225e-02	k: 49296	n:780000
KS ci ratio: 9.696260e-02	ci left: 1.989613e-03	ci right 2.193600e-03	k: 1630	n:780000
LIN37   780000 perm   375 sec   (2079 perm/sec)   p_kst 2.089744e-03   p_cons 6.320000e-02   p_joint 4.871795e-04

Joint ci ratio: 1.997329e-01	ci left: 4.386790e-04	ci right 5.371957e-04	k: 384	n:790000
Cons ci ratio: 1.698307e-02	ci left: 6.264172e-02	ci right 6.371592e-02	k: 49910	n:790000
KS ci ratio: 9.619857e-02	ci left: 1.996545e-03	ci right 2.199539e-03	k: 1656	n:790000
LIN37   790000 perm   383 sec   (2063 perm/sec)   p_kst 2.096203e-03   p_cons 6.317722e-02   p_joint 4.860759e-04

Joint ci ratio: 1.819285e-01	ci left: 5.272403e-04	ci right 6.339299e-04	k: 463	n:800000
Cons ci ratio: 1.687477e-02	ci left: 6.265780e-02	ci right 6.372536e-02	k: 50552	n:800000
KS ci ratio: 9.553767e-02	ci left: 1.999649e-03	ci right 2.201484e-03	k: 1679	n:800000
LIN37   800000 perm   391 sec   (2045 perm/sec)   p_kst 2.098750e-03   p_cons 6.319000e-02   p_joint 5.787500e-04

Joint ci ratio: 1.811496e-01	ci left: 5.254449e-04	ci right 6.312661e-04	k: 467	n:810000
Cons ci ratio: 1.677639e-02	ci left: 6.261817e-02	ci right 6.367878e-02	k: 51149	n:810000
KS ci ratio: 9.491815e-02	ci left: 2.001475e-03	ci right 2.202112e-03	k: 1701	n:810000
LIN37   810000 perm   399 sec   (2029 perm/sec)   p_kst 2.100000e-03   p_cons 6.314691e-02   p_joint 5.765432e-04

Joint ci ratio: 1.827196e-01	ci left: 5.097249e-04	ci right 6.133683e-04	k: 459	n:820000
Cons ci ratio: 1.667318e-02	ci left: 6.262569e-02	ci right 6.367984e-02	k: 51784	n:820000
KS ci ratio: 9.431052e-02	ci left: 2.003262e-03	ci right 2.202721e-03	k: 1723	n:820000
LIN37   820000 perm   407 sec   (2013 perm/sec)   p_kst 2.101220e-03   p_cons 6.315122e-02   p_joint 5.597561e-04

Joint ci ratio: 1.815394e-01	ci left: 5.104830e-04	ci right 6.135365e-04	k: 465	n:830000
Cons ci ratio: 1.657134e-02	ci left: 6.263665e-02	ci right 6.368448e-02	k: 52422	n:830000
KS ci ratio: 9.355347e-02	ci left: 2.012069e-03	ci right 2.210709e-03	k: 1751	n:830000
LIN37   830000 perm   415 sec   (1998 perm/sec)   p_kst 2.109639e-03   p_cons 6.315904e-02   p_joint 5.602410e-04

Joint ci ratio: 1.807654e-01	ci left: 5.089518e-04	ci right 6.112101e-04	k: 469	n:840000
Cons ci ratio: 1.647565e-02	ci left: 6.261653e-02	ci right 6.365791e-02	k: 53034	n:840000
KS ci ratio: 9.307673e-02	ci left: 2.009044e-03	ci right 2.206319e-03	k: 1769	n:840000
LIN37   840000 perm   424 sec   (1983 perm/sec)   p_kst 2.105952e-03   p_cons 6.313571e-02   p_joint 5.583333e-04

Joint ci ratio: 1.800012e-01	ci left: 5.074575e-04	ci right 6.089376e-04	k: 473	n:850000
Cons ci ratio: 1.637704e-02	ci left: 6.262972e-02	ci right 6.366503e-02	k: 53674	n:850000
KS ci ratio: 9.265916e-02	ci left: 2.003794e-03	ci right 2.199624e-03	k: 1785	n:850000
LIN37   850000 perm   432 sec   (1969 perm/sec)   p_kst 2.100000e-03   p_cons 6.314588e-02   p_joint 5.564706e-04

Joint ci ratio: 1.786865e-01	ci left: 5.093310e-04	ci right 6.103614e-04	k: 480	n:860000
Cons ci ratio: 1.628595e-02	ci left: 6.260091e-02	ci right 6.362994e-02	k: 54278	n:860000
KS ci ratio: 9.211917e-02	ci left: 2.004349e-03	ci right 2.199029e-03	k: 1806	n:860000
LIN37   860000 perm   440 sec   (1955 perm/sec)   p_kst 2.100000e-03   p_cons 6.311395e-02   p_joint 5.581395e-04

Joint ci ratio: 1.774002e-01	ci left: 5.111640e-04	ci right 6.117499e-04	k: 487	n:870000
Cons ci ratio: 1.618833e-02	ci left: 6.263119e-02	ci right 6.365448e-02	k: 54933	n:870000
KS ci ratio: 9.176474e-02	ci left: 1.997032e-03	ci right 2.190215e-03	k: 1820	n:870000
LIN37   870000 perm   448 sec   (1940 perm/sec)   p_kst 2.091954e-03   p_cons 6.314138e-02   p_joint 5.597701e-04

Joint ci ratio: 1.766777e-01	ci left: 5.096994e-04	ci right 6.095449e-04	k: 491	n:880000
Cons ci ratio: 1.609863e-02	ci left: 6.261551e-02	ci right 6.363283e-02	k: 55548	n:880000
KS ci ratio: 9.128983e-02	ci left: 1.995435e-03	ci right 2.187411e-03	k: 1839	n:880000
LIN37   880000 perm   457 sec   (1926 perm/sec)   p_kst 2.089773e-03   p_cons 6.312273e-02   p_joint 5.579545e-04

Joint ci ratio: 1.756101e-01	ci left: 5.104168e-04	ci right 6.097346e-04	k: 497	n:890000
Cons ci ratio: 1.601359e-02	ci left: 6.257669e-02	ci right 6.358796e-02	k: 56142	n:890000
KS ci ratio: 9.074887e-02	ci left: 1.997171e-03	ci right 2.188115e-03	k: 1861	n:890000
LIN37   890000 perm   465 sec   (1912 perm/sec)   p_kst 2.091011e-03   p_cons 6.308090e-02   p_joint 5.584270e-04

Joint ci ratio: 1.747352e-01	ci left: 5.100574e-04	ci right 6.087587e-04	k: 502	n:900000
Cons ci ratio: 1.592570e-02	ci left: 6.256974e-02	ci right 6.357530e-02	k: 56764	n:900000
KS ci ratio: 9.021741e-02	ci left: 1.998872e-03	ci right 2.188800e-03	k: 1883	n:900000
LIN37   900000 perm   475 sec   (1895 perm/sec)   p_kst 2.092222e-03   p_cons 6.307111e-02   p_joint 5.577778e-04

Joint ci ratio: 1.738732e-01	ci left: 5.097072e-04	ci right 6.078030e-04	k: 507	n:910000
Cons ci ratio: 1.583968e-02	ci left: 6.255968e-02	ci right 6.355959e-02	k: 57383	n:910000
KS ci ratio: 8.976600e-02	ci left: 1.997315e-03	ci right 2.186096e-03	k: 1902	n:910000
LIN37   910000 perm   484 sec   (1880 perm/sec)   p_kst 2.090110e-03   p_cons 6.305824e-02   p_joint 5.571429e-04

Joint ci ratio: 1.728554e-01	ci left: 5.104057e-04	ci right 6.080009e-04	k: 513	n:920000
Cons ci ratio: 1.575316e-02	ci left: 6.256392e-02	ci right 6.355839e-02	k: 58015	n:920000
KS ci ratio: 8.925152e-02	ci left: 1.998983e-03	ci right 2.186783e-03	k: 1924	n:920000
LIN37   920000 perm   493 sec   (1868 perm/sec)   p_kst 2.091304e-03   p_cons 6.305978e-02   p_joint 5.576087e-04

Joint ci ratio: 1.720208e-01	ci left: 5.100618e-04	ci right 6.070714e-04	k: 518	n:930000
Cons ci ratio: 1.566847e-02	ci left: 6.256488e-02	ci right 6.355397e-02	k: 58644	n:930000
KS ci ratio: 8.881439e-02	ci left: 1.997464e-03	ci right 2.184154e-03	k: 1943	n:930000
LIN37   930000 perm   502 sec   (1854 perm/sec)   p_kst 2.089247e-03   p_cons 6.305806e-02   p_joint 5.569892e-04

Joint ci ratio: 1.710350e-01	ci left: 5.107445e-04	ci right 6.072699e-04	k: 524	n:940000
Cons ci ratio: 1.558807e-02	ci left: 6.254357e-02	ci right 6.352721e-02	k: 59252	n:940000
KS ci ratio: 8.833853e-02	ci left: 1.998060e-03	ci right 2.183753e-03	k: 1964	n:940000
LIN37   940000 perm   510 sec   (1842 perm/sec)   p_kst 2.089362e-03   p_cons 6.303404e-02   p_joint 5.574468e-04

Joint ci ratio: 2.062765e-01	ci left: 3.408151e-04	ci right 4.201779e-04	k: 360	n:950000
Cons ci ratio: 1.550655e-02	ci left: 6.254056e-02	ci right 6.351895e-02	k: 59877	n:950000
KS ci ratio: 8.802583e-02	ci left: 1.991439e-03	ci right 2.175829e-03	k: 1978	n:950000
LIN37   950000 perm   519 sec   (1829 perm/sec)   p_kst 2.082105e-03   p_cons 6.302842e-02   p_joint 3.789474e-04

Joint ci ratio: 2.045831e-01	ci left: 3.431935e-04	ci right 4.223720e-04	k: 366	n:960000
Cons ci ratio: 1.542602e-02	ci left: 6.253969e-02	ci right 6.351295e-02	k: 60504	n:960000
KS ci ratio: 8.756247e-02	ci left: 1.992090e-03	ci right 2.175519e-03	k: 1999	n:960000
LIN37   960000 perm   529 sec   (1815 perm/sec)   p_kst 2.082292e-03   p_cons 6.302500e-02   p_joint 3.812500e-04

Joint ci ratio: 2.180782e-01	ci left: 2.966919e-04	ci right 3.702633e-04	k: 322	n:970000
Cons ci ratio: 1.534567e-02	ci left: 6.254707e-02	ci right 6.351533e-02	k: 61139	n:970000
KS ci ratio: 8.710634e-02	ci left: 1.992729e-03	ci right 2.175213e-03	k: 2020	n:970000
LIN37   970000 perm   538 sec   (1803 perm/sec)   p_kst 2.082474e-03   p_cons 6.302990e-02   p_joint 3.319588e-04

Joint ci ratio: 1.666482e-01	ci left: 5.172623e-04	ci right 6.122606e-04	k: 552	n:980000
Cons ci ratio: 1.527091e-02	ci left: 6.252077e-02	ci right 6.348386e-02	k: 61741	n:980000
KS ci ratio: 8.657235e-02	ci left: 1.997352e-03	ci right 2.179081e-03	k: 2045	n:980000
LIN37   980000 perm   547 sec   (1790 perm/sec)   p_kst 2.086735e-03   p_cons 6.300102e-02   p_joint 5.632653e-04

Joint ci ratio: 1.659000e-01	ci left: 5.168777e-04	ci right 6.113367e-04	k: 557	n:990000
Cons ci ratio: 1.519203e-02	ci left: 6.253526e-02	ci right 6.349356e-02	k: 62383	n:990000
KS ci ratio: 8.611058e-02	ci left: 1.998919e-03	ci right 2.179772e-03	k: 2067	n:990000
LIN37   990000 perm   557 sec   (1779 perm/sec)   p_kst 2.087879e-03   p_cons 6.301313e-02   p_joint 5.626263e-04

Joint ci ratio: 1.651617e-01	ci left: 5.165018e-04	ci right 6.104303e-04	k: 562	n:1000000
Cons ci ratio: 1.511526e-02	ci left: 6.254250e-02	ci right 6.349603e-02	k: 63018	n:1000000
KS ci ratio: 8.569722e-02	ci left: 1.998500e-03	ci right 2.178403e-03	k: 2087	n:1000000
LIN37   1000000 perm   566 sec   (1767 perm/sec)   p_kst 2.087000e-03   p_cons 6.301800e-02   p_joint 5.620000e-04

Joint ci ratio: 1.642886e-01	ci left: 5.170836e-04	ci right 6.105717e-04	k: 568	n:1010000
Cons ci ratio: 1.503699e-02	ci left: 6.257033e-02	ci right 6.351930e-02	k: 63674	n:1010000
KS ci ratio: 8.522900e-02	ci left: 2.000999e-03	ci right 2.180094e-03	k: 2110	n:1010000
LIN37   1010000 perm   576 sec   (1755 perm/sec)   p_kst 2.089109e-03   p_cons 6.304356e-02   p_joint 5.623762e-04

Joint ci ratio: 1.984589e-01	ci left: 3.444171e-04	ci right 4.212117e-04	k: 389	n:1020000
Cons ci ratio: 1.496216e-02	ci left: 6.258005e-02	ci right 6.352440e-02	k: 64312	n:1020000
KS ci ratio: 8.490804e-02	ci left: 1.996733e-03	ci right 2.174741e-03	k: 2126	n:1020000
LIN37   1020000 perm   585 sec   (1742 perm/sec)   p_kst 2.084314e-03   p_cons 6.305098e-02   p_joint 3.813725e-04

Joint ci ratio: 1.979521e-01	ci left: 3.429186e-04	ci right 4.191603e-04	k: 391	n:1030000
Cons ci ratio: 1.489235e-02	ci left: 6.255862e-02	ci right 6.349821e-02	k: 64918	n:1030000
KS ci ratio: 8.441324e-02	ci left: 2.001106e-03	ci right 2.178412e-03	k: 2151	n:1030000
LIN37   1030000 perm   595 sec   (1731 perm/sec)   p_kst 2.088350e-03   p_cons 6.302718e-02   p_joint 3.796117e-04

Joint ci ratio: 1.974492e-01	ci left: 3.414492e-04	ci right 4.171481e-04	k: 393	n:1040000
Cons ci ratio: 1.481760e-02	ci left: 6.258457e-02	ci right 6.351979e-02	k: 65573	n:1040000
KS ci ratio: 8.414027e-02	ci left: 1.995042e-03	ci right 2.171211e-03	k: 2165	n:1040000
LIN37   1040000 perm   605 sec   (1720 perm/sec)   p_kst 2.081731e-03   p_cons 6.305096e-02   p_joint 3.778846e-04

Joint ci ratio: 1.969502e-01	ci left: 3.400080e-04	ci right 4.151739e-04	k: 395	n:1050000
Cons ci ratio: 1.474788e-02	ci left: 6.257872e-02	ci right 6.350941e-02	k: 66195	n:1050000
KS ci ratio: 8.363957e-02	ci left: 2.000284e-03	ci right 2.175814e-03	k: 2191	n:1050000
LIN37   1050000 perm   615 sec   (1708 perm/sec)   p_kst 2.086667e-03   p_cons 6.304286e-02   p_joint 3.761905e-04

Joint ci ratio: 1.967022e-01	ci left: 3.376972e-04	ci right 4.122471e-04	k: 396	n:1060000
Cons ci ratio: 1.467457e-02	ci left: 6.260965e-02	ci right 6.353614e-02	k: 66856	n:1060000
KS ci ratio: 8.331727e-02	ci left: 1.997116e-03	ci right 2.171660e-03	k: 2208	n:1060000
LIN37   1060000 perm   625 sec   (1696 perm/sec)   p_kst 2.083019e-03   p_cons 6.307170e-02   p_joint 3.735849e-04

Joint ci ratio: 1.967026e-01	ci left: 3.345411e-04	ci right 4.083944e-04	k: 396	n:1070000
Cons ci ratio: 1.460407e-02	ci left: 6.262605e-02	ci right 6.354828e-02	k: 67502	n:1070000
KS ci ratio: 8.292403e-02	ci left: 1.997670e-03	ci right 2.171398e-03	k: 2229	n:1070000
LIN37   1070000 perm   635 sec   (1685 perm/sec)   p_kst 2.083178e-03   p_cons 6.308598e-02   p_joint 3.700935e-04

Joint ci ratio: 1.952326e-01	ci left: 3.367266e-04	ci right 4.104407e-04	k: 402	n:1080000
Cons ci ratio: 1.454119e-02	ci left: 6.258863e-02	ci right 6.350631e-02	k: 68090	n:1080000
KS ci ratio: 8.249959e-02	ci left: 2.000029e-03	ci right 2.173029e-03	k: 2252	n:1080000
LIN37   1080000 perm   645 sec   (1674 perm/sec)   p_kst 2.085185e-03   p_cons 6.304630e-02   p_joint 3.722222e-04

Joint ci ratio: 1.940325e-01	ci left: 3.380010e-04	ci right 4.114856e-04	k: 407	n:1090000
Cons ci ratio: 1.447382e-02	ci left: 6.259488e-02	ci right 6.350837e-02	k: 68725	n:1090000
KS ci ratio: 8.208161e-02	ci left: 2.002347e-03	ci right 2.174628e-03	k: 2275	n:1090000
LIN37   1090000 perm   655 sec   (1664 perm/sec)   p_kst 2.087156e-03   p_cons 6.305046e-02   p_joint 3.733945e-04

Joint ci ratio: 1.933231e-01	ci left: 3.375233e-04	ci right 4.106042e-04	k: 410	n:1100000
Cons ci ratio: 1.440960e-02	ci left: 6.258290e-02	ci right 6.349213e-02	k: 69340	n:1100000
KS ci ratio: 8.172336e-02	ci left: 2.001953e-03	ci right 2.173413e-03	k: 2295	n:1100000
LIN37   1100000 perm   665 sec   (1653 perm/sec)   p_kst 2.086364e-03   p_cons 6.303636e-02   p_joint 3.727273e-04

Joint ci ratio: 1.921577e-01	ci left: 3.387697e-04	ci right 4.116266e-04	k: 415	n:1110000
Cons ci ratio: 1.434853e-02	ci left: 6.255229e-02	ci right 6.345720e-02	k: 69934	n:1110000
KS ci ratio: 8.129944e-02	ci left: 2.005099e-03	ci right 2.175895e-03	k: 2319	n:1110000
LIN37   1110000 perm   676 sec   (1643 perm/sec)   p_kst 2.089189e-03   p_cons 6.300360e-02   p_joint 3.738739e-04

Joint ci ratio: 1.914686e-01	ci left: 3.382949e-04	ci right 4.107584e-04	k: 418	n:1120000
Cons ci ratio: 1.429017e-02	ci left: 6.250622e-02	ci right 6.340675e-02	k: 70510	n:1120000
KS ci ratio: 8.086476e-02	ci left: 2.009065e-03	ci right 2.179241e-03	k: 2344	n:1120000
LIN37   1120000 perm   686 sec   (1633 perm/sec)   p_kst 2.092857e-03   p_cons 6.295536e-02   p_joint 3.732143e-04

Joint ci ratio: 1.907869e-01	ci left: 3.378290e-04	ci right 4.099051e-04	k: 421	n:1130000
Cons ci ratio: 1.422761e-02	ci left: 6.250155e-02	ci right 6.339804e-02	k: 71132	n:1130000
KS ci ratio: 8.057338e-02	ci left: 2.006026e-03	ci right 2.175303e-03	k: 2361	n:1130000
LIN37   1130000 perm   696 sec   (1623 perm/sec)   p_kst 2.089381e-03   p_cons 6.294867e-02   p_joint 3.725664e-04

Joint ci ratio: 1.905615e-01	ci left: 3.357008e-04	ci right 4.072285e-04	k: 422	n:1140000
Cons ci ratio: 1.416744e-02	ci left: 6.248385e-02	ci right 6.337626e-02	k: 71739	n:1140000
KS ci ratio: 8.013336e-02	ci left: 2.010778e-03	ci right 2.179487e-03	k: 2387	n:1140000
LIN37   1140000 perm   707 sec   (1613 perm/sec)   p_kst 2.093860e-03   p_cons 6.292895e-02   p_joint 3.701754e-04

Joint ci ratio: 1.890038e-01	ci left: 3.385795e-04	ci right 4.100632e-04	k: 429	n:1150000
Cons ci ratio: 1.410511e-02	ci left: 6.249074e-02	ci right 6.337929e-02	k: 72374	n:1150000
KS ci ratio: 7.986642e-02	ci left: 2.006928e-03	ci right 2.174726e-03	k: 2403	n:1150000
LIN37   1150000 perm   717 sec   (1603 perm/sec)   p_kst 2.089565e-03   p_cons 6.293391e-02   p_joint 3.730435e-04

Joint ci ratio: 1.881307e-01	ci left: 3.389462e-04	ci right 4.101390e-04	k: 433	n:1160000
Cons ci ratio: 1.404319e-02	ci left: 6.250095e-02	ci right 6.338571e-02	k: 73013	n:1160000
KS ci ratio: 7.961862e-02	ci left: 2.002300e-03	ci right 2.169168e-03	k: 2418	n:1160000
LIN37   1160000 perm   728 sec   (1594 perm/sec)   p_kst 2.084483e-03   p_cons 6.294224e-02   p_joint 3.732759e-04

Joint ci ratio: 1.874839e-01	ci left: 3.384928e-04	ci right 4.093181e-04	k: 436	n:1170000
Cons ci ratio: 1.398248e-02	ci left: 6.250759e-02	ci right 6.338859e-02	k: 73648	n:1170000
KS ci ratio: 7.924272e-02	ci left: 2.004454e-03	ci right 2.170676e-03	k: 2441	n:1170000
LIN37   1170000 perm   739 sec   (1584 perm/sec)   p_kst 2.086325e-03   p_cons 6.294701e-02   p_joint 3.726496e-04

Joint ci ratio: 1.859999e-01	ci left: 3.412792e-04	ci right 4.120584e-04	k: 443	n:1180000
Cons ci ratio: 1.392846e-02	ci left: 6.246429e-02	ci right 6.334125e-02	k: 74224	n:1180000
KS ci ratio: 7.888812e-02	ci left: 2.005742e-03	ci right 2.171293e-03	k: 2463	n:1180000
LIN37   1180000 perm   749 sec   (1575 perm/sec)   p_kst 2.087288e-03   p_cons 6.290169e-02   p_joint 3.754237e-04

Joint ci ratio: 1.853747e-01	ci left: 3.408151e-04	ci right 4.112338e-04	k: 446	n:1190000
Cons ci ratio: 1.387476e-02	ci left: 6.242423e-02	ci right 6.329723e-02	k: 74803	n:1190000
KS ci ratio: 7.855408e-02	ci left: 2.006187e-03	ci right 2.171041e-03	k: 2484	n:1190000
LIN37   1190000 perm   760 sec   (1566 perm/sec)   p_kst 2.087395e-03   p_cons 6.285966e-02   p_joint 3.747899e-04

Joint ci ratio: 1.841428e-01	ci left: 3.427437e-04	ci right 4.130378e-04	k: 452	n:1200000
Cons ci ratio: 1.381660e-02	ci left: 6.242804e-02	ci right 6.329740e-02	k: 75434	n:1200000
KS ci ratio: 7.809943e-02	ci left: 2.013162e-03	ci right 2.177589e-03	k: 2513	n:1200000
LIN37   1200000 perm   771 sec   (1557 perm/sec)   p_kst 2.094167e-03   p_cons 6.286167e-02   p_joint 3.766667e-04

Joint ci ratio: 1.831348e-01	ci left: 3.438534e-04	ci right 4.139462e-04	k: 457	n:1210000
Cons ci ratio: 1.375771e-02	ci left: 6.244416e-02	ci right 6.331000e-02	k: 76080	n:1210000
KS ci ratio: 7.783683e-02	ci left: 2.010300e-03	ci right 2.173916e-03	k: 2530	n:1210000
LIN37   1210000 perm   781 sec   (1548 perm/sec)   p_kst 2.090909e-03   p_cons 6.287603e-02   p_joint 3.776860e-04

Joint ci ratio: 1.935624e-01	ci left: 3.035438e-04	ci right 3.693582e-04	k: 409	n:1220000
Cons ci ratio: 1.370185e-02	ci left: 6.244040e-02	ci right 6.330266e-02	k: 76702	n:1220000
KS ci ratio: 7.754637e-02	ci left: 2.009094e-03	ci right 2.171973e-03	k: 2549	n:1220000
LIN37   1220000 perm   792 sec   (1540 perm/sec)   p_kst 2.089344e-03   p_cons 6.287049e-02   p_joint 3.352459e-04

Joint ci ratio: 1.862112e-01	ci left: 3.266307e-04	ci right 3.944575e-04	k: 442	n:1230000
Cons ci ratio: 1.451640e-02	ci left: 5.556109e-02	ci right 5.637433e-02	k: 68839	n:1230000
KS ci ratio: 7.710889e-02	ci left: 2.015881e-03	ci right 2.178348e-03	k: 2578	n:1230000
LIN37   1230000 perm   804 sec   (1531 perm/sec)   p_kst 2.095935e-03   p_cons 5.596667e-02   p_joint 3.593496e-04

Joint ci ratio: 1.849627e-01	ci left: 3.286105e-04	ci right 3.963397e-04	k: 448	n:1240000
Cons ci ratio: 1.446124e-02	ci left: 5.553728e-02	ci right 5.634706e-02	k: 69367	n:1240000
KS ci ratio: 7.672296e-02	ci left: 2.020189e-03	ci right 2.182151e-03	k: 2604	n:1240000
LIN37   1240000 perm   815 sec   (1522 perm/sec)   p_kst 2.100000e-03   p_cons 5.594113e-02   p_joint 3.612903e-04

Joint ci ratio: 1.847572e-01	ci left: 3.267445e-04	ci right 3.940060e-04	k: 449	n:1250000
Cons ci ratio: 1.440104e-02	ci left: 5.555531e-02	ci right 5.636195e-02	k: 69947	n:1250000
KS ci ratio: 7.645935e-02	ci left: 2.018151e-03	ci right 2.179370e-03	k: 2622	n:1250000
LIN37   1250000 perm   826 sec   (1514 perm/sec)   p_kst 2.097600e-03   p_cons 5.595760e-02   p_joint 3.592000e-04

Joint ci ratio: 1.779637e-01	ci left: 3.506689e-04	ci right 4.199154e-04	k: 484	n:1260000
Cons ci ratio: 1.433996e-02	ci left: 5.558493e-02	ci right 5.638855e-02	k: 70542	n:1260000
KS ci ratio: 7.606866e-02	ci left: 2.023154e-03	ci right 2.183910e-03	k: 2649	n:1260000
LIN37   1260000 perm   837 sec   (1505 perm/sec)   p_kst 2.102381e-03   p_cons 5.598571e-02   p_joint 3.841270e-04

Joint ci ratio: 1.763348e-01	ci left: 3.546802e-04	ci right 4.240095e-04	k: 493	n:1270000
Cons ci ratio: 1.428423e-02	ci left: 5.558034e-02	ci right 5.638074e-02	k: 71094	n:1270000
KS ci ratio: 7.576904e-02	ci left: 2.023445e-03	ci right 2.183563e-03	k: 2670	n:1270000
LIN37   1270000 perm   848 sec   (1497 perm/sec)   p_kst 2.102362e-03   p_cons 5.597953e-02   p_joint 3.881890e-04

Joint ci ratio: 1.752734e-01	ci left: 3.563905e-04	ci right 4.255904e-04	k: 499	n:1280000
Cons ci ratio: 1.422662e-02	ci left: 5.559452e-02	ci right 5.639187e-02	k: 71670	n:1280000
KS ci ratio: 7.543082e-02	ci left: 2.026033e-03	ci right 2.185608e-03	k: 2694	n:1280000
LIN37   1280000 perm   860 sec   (1488 perm/sec)   p_kst 2.104687e-03   p_cons 5.599219e-02   p_joint 3.898437e-04

Joint ci ratio: 1.660598e-01	ci left: 3.959285e-04	ci right 4.683607e-04	k: 556	n:1290000
Cons ci ratio: 1.416960e-02	ci left: 5.560925e-02	ci right 5.640359e-02	k: 72247	n:1290000
KS ci ratio: 7.512478e-02	ci left: 2.027060e-03	ci right 2.186041e-03	k: 2716	n:1290000
LIN37   1290000 perm   872 sec   (1480 perm/sec)   p_kst 2.105426e-03   p_cons 5.600543e-02   p_joint 4.310078e-04

Joint ci ratio: 1.689682e-01	ci left: 3.788799e-04	ci right 4.495308e-04	k: 537	n:1300000
Cons ci ratio: 1.411541e-02	ci left: 5.560767e-02	ci right 5.639893e-02	k: 72803	n:1300000
KS ci ratio: 7.478141e-02	ci left: 2.030338e-03	ci right 2.188816e-03	k: 2741	n:1300000
LIN37   1300000 perm   883 sec   (1472 perm/sec)   p_kst 2.108462e-03   p_cons 5.600231e-02   p_joint 4.130769e-04

Joint ci ratio: 1.684991e-01	ci left: 3.781811e-04	ci right 4.484859e-04	k: 540	n:1310000
Cons ci ratio: 1.406357e-02	ci left: 5.559318e-02	ci right 5.638130e-02	k: 73342	n:1310000
KS ci ratio: 7.452372e-02	ci left: 2.029072e-03	ci right 2.186882e-03	k: 2760	n:1310000
LIN37   1310000 perm   895 sec   (1463 perm/sec)   p_kst 2.106870e-03   p_cons 5.598626e-02   p_joint 4.122137e-04

Joint ci ratio: 1.677258e-01	ci left: 3.789446e-04	ci right 4.490354e-04	k: 545	n:1320000
Cons ci ratio: 1.401270e-02	ci left: 5.557590e-02	ci right 5.636090e-02	k: 73877	n:1320000
KS ci ratio: 7.430887e-02	ci left: 2.025596e-03	ci right 2.182662e-03	k: 2776	n:1320000
LIN37   1320000 perm   910 sec   (1451 perm/sec)   p_kst 2.103030e-03   p_cons 5.596742e-02   p_joint 4.128788e-04

Joint ci ratio: 1.666606e-01	ci left: 3.811384e-04	ci right 4.511423e-04	k: 552	n:1330000
Cons ci ratio: 1.396098e-02	ci left: 5.556937e-02	ci right 5.635136e-02	k: 74426	n:1330000
KS ci ratio: 7.409586e-02	ci left: 2.022173e-03	ci right 2.178504e-03	k: 2792	n:1330000
LIN37   1330000 perm   923 sec   (1442 perm/sec)   p_kst 2.099248e-03   p_cons 5.595940e-02   p_joint 4.150376e-04

Joint ci ratio: 1.656156e-01	ci left: 3.833008e-04	ci right 4.532164e-04	k: 559	n:1340000
Cons ci ratio: 1.391258e-02	ci left: 5.554212e-02	ci right 5.632100e-02	k: 74947	n:1340000
KS ci ratio: 7.387150e-02	ci left: 2.019534e-03	ci right 2.175168e-03	k: 2809	n:1340000
LIN37   1340000 perm   935 sec   (1433 perm/sec)   p_kst 2.096269e-03   p_cons 5.593060e-02   p_joint 4.171642e-04

Joint ci ratio: 1.653207e-01	ci left: 3.818816e-04	ci right 4.514021e-04	k: 561	n:1350000
Cons ci ratio: 1.386235e-02	ci left: 5.553300e-02	ci right 5.630891e-02	k: 75492	n:1350000
KS ci ratio: 7.371451e-02	ci left: 2.013299e-03	ci right 2.168109e-03	k: 2821	n:1350000
LIN37   1350000 perm   950 sec   (1421 perm/sec)   p_kst 2.089630e-03   p_cons 5.592000e-02   p_joint 4.155556e-04

Joint ci ratio: 1.694430e-01	ci left: 3.600519e-04	ci right 4.273997e-04	k: 534	n:1360000
Cons ci ratio: 1.380977e-02	ci left: 5.554600e-02	ci right 5.631913e-02	k: 76067	n:1360000
KS ci ratio: 7.333843e-02	ci left: 2.019427e-03	ci right 2.173882e-03	k: 2850	n:1360000
LIN37   1360000 perm   962 sec   (1414 perm/sec)   p_kst 2.095588e-03   p_cons 5.593162e-02   p_joint 3.926471e-04

Joint ci ratio: 1.685006e-01	ci left: 3.616181e-04	ci right 4.288446e-04	k: 540	n:1370000
Cons ci ratio: 1.375608e-02	ci left: 5.557191e-02	ci right 5.634237e-02	k: 76660	n:1370000
KS ci ratio: 7.306981e-02	ci left: 2.019734e-03	ci right 2.173623e-03	k: 2871	n:1370000
LIN37   1370000 perm   975 sec   (1406 perm/sec)   p_kst 2.095620e-03   p_cons 5.595620e-02   p_joint 3.941606e-04

Joint ci ratio: 1.683453e-01	ci left: 3.596918e-04	ci right 4.264922e-04	k: 541	n:1380000
Cons ci ratio: 1.370789e-02	ci left: 5.555990e-02	ci right 5.632747e-02	k: 77201	n:1380000
KS ci ratio: 7.279152e-02	ci left: 2.020750e-03	ci right 2.174105e-03	k: 2893	n:1380000
LIN37   1380000 perm   987 sec   (1398 perm/sec)   p_kst 2.096377e-03   p_cons 5.594275e-02   p_joint 3.920290e-04

Joint ci ratio: 1.680357e-01	ci left: 3.584823e-04	ci right 4.249233e-04	k: 543	n:1390000
Cons ci ratio: 1.365807e-02	ci left: 5.556456e-02	ci right 5.632938e-02	k: 77765	n:1390000
KS ci ratio: 7.264131e-02	ci left: 2.014688e-03	ci right 2.167254e-03	k: 2905	n:1390000
LIN37   1390000 perm   1000 sec   (1390 perm/sec)   p_kst 2.089928e-03   p_cons 5.594604e-02   p_joint 3.906475e-04

Joint ci ratio: 1.677277e-01	ci left: 3.572903e-04	ci right 4.233767e-04	k: 545	n:1400000
Cons ci ratio: 1.360971e-02	ci left: 5.556203e-02	ci right 5.632409e-02	k: 78319	n:1400000
KS ci ratio: 7.235548e-02	ci left: 2.016428e-03	ci right 2.168500e-03	k: 2928	n:1400000
LIN37   1400000 perm   1012 sec   (1383 perm/sec)   p_kst 2.091429e-03   p_cons 5.594214e-02   p_joint 3.892857e-04

Joint ci ratio: 1.674215e-01	ci left: 3.561152e-04	ci right 4.218519e-04	k: 547	n:1410000
Cons ci ratio: 1.355976e-02	ci left: 5.557581e-02	ci right 5.633524e-02	k: 78896	n:1410000
KS ci ratio: 7.206078e-02	ci left: 2.018841e-03	ci right 2.170449e-03	k: 2952	n:1410000
LIN37   1410000 perm   1025 sec   (1376 perm/sec)   p_kst 2.093617e-03   p_cons 5.595461e-02   p_joint 3.879433e-04

Joint ci ratio: 1.669652e-01	ci left: 3.556317e-04	ci right 4.210821e-04	k: 550	n:1420000
Cons ci ratio: 1.351423e-02	ci left: 5.555921e-02	ci right 5.631584e-02	k: 79430	n:1420000
KS ci ratio: 7.181801e-02	ci left: 2.018455e-03	ci right 2.169502e-03	k: 2972	n:1420000
LIN37   1420000 perm   1037 sec   (1369 perm/sec)   p_kst 2.092958e-03   p_cons 5.593662e-02   p_joint 3.873239e-04

Joint ci ratio: 1.665125e-01	ci left: 3.551551e-04	ci right 4.203229e-04	k: 553	n:1430000
Cons ci ratio: 1.346648e-02	ci left: 5.556376e-02	ci right 5.631776e-02	k: 79994	n:1430000
KS ci ratio: 7.155372e-02	ci left: 2.019449e-03	ci right 2.169991e-03	k: 2994	n:1430000
LIN37   1430000 perm   1050 sec   (1362 perm/sec)   p_kst 2.093706e-03   p_cons 5.593986e-02   p_joint 3.867133e-04

Joint ci ratio: 1.662129e-01	ci left: 3.540198e-04	ci right 4.188506e-04	k: 555	n:1440000
Cons ci ratio: 1.342109e-02	ci left: 5.555371e-02	ci right 5.630502e-02	k: 80537	n:1440000
KS ci ratio: 7.131603e-02	ci left: 2.019066e-03	ci right 2.169059e-03	k: 3014	n:1440000
LIN37   1440000 perm   1063 sec   (1354 perm/sec)   p_kst 2.093056e-03   p_cons 5.592847e-02   p_joint 3.854167e-04

Joint ci ratio: 1.659148e-01	ci left: 3.529002e-04	ci right 4.173986e-04	k: 557	n:1450000
Cons ci ratio: 1.337345e-02	ci left: 5.556512e-02	ci right 5.631390e-02	k: 81111	n:1450000
KS ci ratio: 7.101038e-02	ci left: 2.022754e-03	ci right 2.172350e-03	k: 3040	n:1450000
LIN37   1450000 perm   1076 sec   (1348 perm/sec)   p_kst 2.096552e-03   p_cons 5.593862e-02   p_joint 3.841379e-04

Joint ci ratio: 1.653233e-01	ci left: 3.531093e-04	ci right 4.173929e-04	k: 561	n:1460000
Cons ci ratio: 1.332795e-02	ci left: 5.556341e-02	ci right 5.630959e-02	k: 81666	n:1460000
KS ci ratio: 7.075488e-02	ci left: 2.023701e-03	ci right 2.172806e-03	k: 3062	n:1460000
LIN37   1460000 perm   1089 sec   (1341 perm/sec)   p_kst 2.097260e-03   p_cons 5.593562e-02   p_joint 3.842466e-04

Joint ci ratio: 1.648839e-01	ci left: 3.526637e-04	ci right 4.166786e-04	k: 564	n:1470000
Cons ci ratio: 1.328454e-02	ci left: 5.554883e-02	ci right 5.629237e-02	k: 82202	n:1470000
KS ci ratio: 7.053649e-02	ci left: 2.022631e-03	ci right 2.171179e-03	k: 3081	n:1470000
LIN37   1470000 perm   1103 sec   (1332 perm/sec)   p_kst 2.095918e-03   p_cons 5.591973e-02   p_joint 3.836735e-04

Joint ci ratio: 1.645929e-01	ci left: 3.515764e-04	ci right 4.152702e-04	k: 566	n:1480000
Cons ci ratio: 1.324053e-02	ci left: 5.554254e-02	ci right 5.628352e-02	k: 82750	n:1480000
KS ci ratio: 7.018416e-02	ci left: 2.029542e-03	ci right 2.177823e-03	k: 3112	n:1480000
LIN37   1480000 perm   1117 sec   (1325 perm/sec)   p_kst 2.102703e-03   p_cons 5.591216e-02   p_joint 3.824324e-04

Joint ci ratio: 1.644481e-01	ci left: 3.498603e-04	ci right 4.131819e-04	k: 567	n:1490000
Cons ci ratio: 1.319704e-02	ci left: 5.553568e-02	ci right 5.627411e-02	k: 83297	n:1490000
KS ci ratio: 6.998220e-02	ci left: 2.027790e-03	ci right 2.175499e-03	k: 3130	n:1490000
LIN37   1490000 perm   1130 sec   (1318 perm/sec)   p_kst 2.100671e-03   p_cons 5.590403e-02   p_joint 3.805369e-04

Joint ci ratio: 1.640156e-01	ci left: 3.494457e-04	ci right 4.125095e-04	k: 570	n:1500000
Cons ci ratio: 1.314916e-02	ci left: 5.556745e-02	ci right 5.630360e-02	k: 83902	n:1500000
KS ci ratio: 6.981531e-02	ci left: 2.024096e-03	ci right 2.171170e-03	k: 3145	n:1500000
LIN37   1500000 perm   1143 sec   (1312 perm/sec)   p_kst 2.096667e-03   p_cons 5.593467e-02   p_joint 3.800000e-04

Joint ci ratio: 1.633021e-01	ci left: 3.503072e-04	ci right 4.132244e-04	k: 575	n:1510000
Cons ci ratio: 1.310837e-02	ci left: 5.554599e-02	ci right 5.627956e-02	k: 84427	n:1510000
KS ci ratio: 6.951749e-02	ci left: 2.028261e-03	ci right 2.174984e-03	k: 3172	n:1510000
LIN37   1510000 perm   1157 sec   (1305 perm/sec)   p_kst 2.100662e-03   p_cons 5.591192e-02   p_joint 3.807947e-04

Joint ci ratio: 1.627380e-01	ci left: 3.505267e-04	ci right 4.132447e-04	k: 579	n:1520000
Cons ci ratio: 1.306576e-02	ci left: 5.554252e-02	ci right 5.627364e-02	k: 84979	n:1520000
KS ci ratio: 6.934300e-02	ci left: 2.025261e-03	ci right 2.171384e-03	k: 3188	n:1520000
LIN37   1520000 perm   1170 sec   (1299 perm/sec)   p_kst 2.097368e-03   p_cons 5.590724e-02   p_joint 3.809211e-04

Joint ci ratio: 1.619026e-01	ci left: 3.519980e-04	ci right 4.146244e-04	k: 585	n:1530000
Cons ci ratio: 1.301841e-02	ci left: 5.558081e-02	ci right 5.630976e-02	k: 85595	n:1530000
KS ci ratio: 6.914819e-02	ci left: 2.023585e-03	ci right 2.169160e-03	k: 3206	n:1530000
LIN37   1530000 perm   1184 sec   (1292 perm/sec)   p_kst 2.095425e-03   p_cons 5.594444e-02   p_joint 3.823529e-04

Joint ci ratio: 1.610800e-01	ci left: 3.534510e-04	ci right 4.159855e-04	k: 591	n:1540000
Cons ci ratio: 1.297571e-02	ci left: 5.558494e-02	ci right 5.631154e-02	k: 86159	n:1540000
KS ci ratio: 6.889082e-02	ci left: 2.025760e-03	ci right 2.170928e-03	k: 3230	n:1540000
LIN37   1540000 perm   1198 sec   (1285 perm/sec)   p_kst 2.097403e-03   p_cons 5.594740e-02   p_joint 3.837662e-04

Joint ci ratio: 1.606734e-01	ci left: 3.530282e-04	ci right 4.153150e-04	k: 594	n:1550000
Cons ci ratio: 1.293248e-02	ci left: 5.559674e-02	ci right 5.632105e-02	k: 86735	n:1550000
KS ci ratio: 6.866803e-02	ci left: 2.026006e-03	ci right 2.170703e-03	k: 3251	n:1550000
LIN37   1550000 perm   1212 sec   (1279 perm/sec)   p_kst 2.097419e-03   p_cons 5.595806e-02   p_joint 3.832258e-04

Joint ci ratio: 1.671198e-01	ci left: 3.231013e-04	ci right 3.826255e-04	k: 549	n:1560000
Cons ci ratio: 1.288952e-02	ci left: 5.560967e-02	ci right 5.633173e-02	k: 87313	n:1560000
KS ci ratio: 6.853136e-02	ci left: 2.021209e-03	ci right 2.165265e-03	k: 3264	n:1560000
LIN37   1560000 perm   1226 sec   (1273 perm/sec)   p_kst 2.092308e-03   p_cons 5.596987e-02   p_joint 3.519231e-04

Joint ci ratio: 1.666659e-01	ci left: 3.228744e-04	ci right 3.821790e-04	k: 552	n:1570000
Cons ci ratio: 1.284885e-02	ci left: 5.560720e-02	ci right 5.632693e-02	k: 87867	n:1570000
KS ci ratio: 6.823923e-02	ci left: 2.025865e-03	ci right 2.169613e-03	k: 3292	n:1570000
LIN37   1570000 perm   1239 sec   (1267 perm/sec)   p_kst 2.096815e-03   p_cons 5.596624e-02   p_joint 3.515924e-04

Joint ci ratio: 1.662157e-01	ci left: 3.226505e-04	ci right 3.817379e-04	k: 555	n:1580000
Cons ci ratio: 1.280794e-02	ci left: 5.560981e-02	ci right 5.632726e-02	k: 88429	n:1580000
KS ci ratio: 6.807416e-02	ci left: 2.022997e-03	ci right 2.166180e-03	k: 3308	n:1580000
LIN37   1580000 perm   1253 sec   (1261 perm/sec)   p_kst 2.093671e-03   p_cons 5.596772e-02   p_joint 3.512658e-04

Joint ci ratio: 1.656210e-01	ci left: 3.230325e-04	ci right 3.819571e-04	k: 559	n:1590000
Cons ci ratio: 1.277032e-02	ci left: 5.558856e-02	ci right 5.630362e-02	k: 88953	n:1590000
KS ci ratio: 6.784896e-02	ci left: 2.023875e-03	ci right 2.166628e-03	k: 3330	n:1590000
LIN37   1590000 perm   1267 sec   (1255 perm/sec)   p_kst 2.094340e-03   p_cons 5.594528e-02   p_joint 3.515723e-04

Joint ci ratio: 1.651792e-01	ci left: 3.228109e-04	ci right 3.815224e-04	k: 562	n:1600000
Cons ci ratio: 1.273098e-02	ci left: 5.558441e-02	ci right 5.629720e-02	k: 89504	n:1600000
KS ci ratio: 6.763610e-02	ci left: 2.024128e-03	ci right 2.166434e-03	k: 3351	n:1600000
LIN37   1600000 perm   1281 sec   (1249 perm/sec)   p_kst 2.094375e-03   p_cons 5.594000e-02   p_joint 3.512500e-04

Joint ci ratio: 1.647409e-01	ci left: 3.225923e-04	ci right 3.810929e-04	k: 565	n:1610000
Cons ci ratio: 1.269276e-02	ci left: 5.557412e-02	ci right 5.628462e-02	k: 90045	n:1610000
KS ci ratio: 6.735522e-02	ci left: 2.028654e-03	ci right 2.170662e-03	k: 3379	n:1610000
LIN37   1610000 perm   1296 sec   (1243 perm/sec)   p_kst 2.098758e-03   p_cons 5.592857e-02   p_joint 3.509317e-04

Joint ci ratio: 1.641618e-01	ci left: 3.229685e-04	ci right 3.813111e-04	k: 569	n:1620000
Cons ci ratio: 1.265310e-02	ci left: 5.557873e-02	ci right 5.628705e-02	k: 90610	n:1620000
KS ci ratio: 6.713706e-02	ci left: 2.029483e-03	ci right 2.171072e-03	k: 3401	n:1620000
LIN37   1620000 perm   1310 sec   (1237 perm/sec)   p_kst 2.099383e-03   p_cons 5.593210e-02   p_joint 3.512346e-04

Joint ci ratio: 1.635888e-01	ci left: 3.233405e-04	ci right 3.815263e-04	k: 573	n:1630000
Cons ci ratio: 1.261257e-02	ci left: 5.559369e-02	ci right 5.629992e-02	k: 91192	n:1630000
KS ci ratio: 6.694060e-02	ci left: 2.029097e-03	ci right 2.170228e-03	k: 3421	n:1630000
LIN37   1630000 perm   1324 sec   (1231 perm/sec)   p_kst 2.098773e-03   p_cons 5.594601e-02   p_joint 3.515337e-04

Joint ci ratio: 1.634466e-01	ci left: 3.219537e-04	ci right 3.798347e-04	k: 574	n:1640000
Cons ci ratio: 1.257285e-02	ci left: 5.560482e-02	ci right 5.630895e-02	k: 91768	n:1640000
KS ci ratio: 6.684323e-02	ci left: 2.022719e-03	ci right 2.163194e-03	k: 3431	n:1640000
LIN37   1640000 perm   1338 sec   (1225 perm/sec)   p_kst 2.092073e-03   p_cons 5.595610e-02   p_joint 3.500000e-04

Joint ci ratio: 1.631631e-01	ci left: 3.211650e-04	ci right 3.787943e-04	k: 576	n:1650000
Cons ci ratio: 1.253819e-02	ci left: 5.557654e-02	ci right 5.627836e-02	k: 92279	n:1650000
KS ci ratio: 6.662032e-02	ci left: 2.024167e-03	ci right 2.164256e-03	k: 3454	n:1650000
LIN37   1650000 perm   1353 sec   (1220 perm/sec)   p_kst 2.093333e-03   p_cons 5.592667e-02   p_joint 3.490909e-04

Joint ci ratio: 1.628812e-01	ci left: 3.203860e-04	ci right 3.777663e-04	k: 578	n:1660000
Cons ci ratio: 1.250032e-02	ci left: 5.557803e-02	ci right 5.627773e-02	k: 92839	n:1660000
KS ci ratio: 6.644752e-02	ci left: 2.022637e-03	ci right 2.162242e-03	k: 3472	n:1660000
LIN37   1660000 perm   1367 sec   (1214 perm/sec)   p_kst 2.091566e-03   p_cons 5.592711e-02   p_joint 3.481928e-04

Joint ci ratio: 1.554085e-01	ci left: 3.512411e-04	ci right 4.109929e-04	k: 635	n:1670000
Cons ci ratio: 1.246540e-02	ci left: 5.555742e-02	ci right 5.625490e-02	k: 93362	n:1670000
KS ci ratio: 6.621905e-02	ci left: 2.024658e-03	ci right 2.163904e-03	k: 3496	n:1670000
LIN37   1670000 perm   1382 sec   (1208 perm/sec)   p_kst 2.093413e-03   p_cons 5.590539e-02   p_joint 3.802395e-04

Joint ci ratio: 1.550433e-01	ci left: 3.508667e-04	ci right 4.104015e-04	k: 638	n:1680000
Cons ci ratio: 1.242951e-02	ci left: 5.554774e-02	ci right 5.624307e-02	k: 93903	n:1680000
KS ci ratio: 6.604934e-02	ci left: 2.023143e-03	ci right 2.161915e-03	k: 3514	n:1680000
LIN37   1680000 perm   1397 sec   (1203 perm/sec)   p_kst 2.091667e-03   p_cons 5.589464e-02   p_joint 3.797619e-04

Joint ci ratio: 1.549222e-01	ci left: 3.493594e-04	ci right 4.085878e-04	k: 639	n:1690000
Cons ci ratio: 1.239442e-02	ci left: 5.553405e-02	ci right 5.622723e-02	k: 94437	n:1690000
KS ci ratio: 6.579700e-02	ci left: 2.026885e-03	ci right 2.165362e-03	k: 3541	n:1690000
LIN37   1690000 perm   1412 sec   (1197 perm/sec)   p_kst 2.095266e-03   p_cons 5.587988e-02   p_joint 3.781065e-04

Joint ci ratio: 1.544403e-01	ci left: 3.495662e-04	ci right 4.086282e-04	k: 643	n:1700000
Cons ci ratio: 1.235693e-02	ci left: 5.554340e-02	ci right 5.623459e-02	k: 95010	n:1700000
KS ci ratio: 6.561204e-02	ci left: 2.026534e-03	ci right 2.164583e-03	k: 3561	n:1700000
LIN37   1700000 perm   1426 sec   (1192 perm/sec)   p_kst 2.094706e-03   p_cons 5.588824e-02   p_joint 3.782353e-04

Joint ci ratio: 1.536076e-01	ci left: 3.514578e-04	ci right 4.104898e-04	k: 650	n:1710000
Cons ci ratio: 1.232094e-02	ci left: 5.554273e-02	ci right 5.623188e-02	k: 95566	n:1710000
KS ci ratio: 6.536466e-02	ci left: 2.030214e-03	ci right 2.167972e-03	k: 3588	n:1710000
LIN37   1710000 perm   1441 sec   (1187 perm/sec)   p_kst 2.098246e-03   p_cons 5.588655e-02   p_joint 3.801170e-04

Joint ci ratio: 1.600054e-01	ci left: 3.209258e-04	ci right 3.772905e-04	k: 599	n:1720000
Cons ci ratio: 1.228561e-02	ci left: 5.553917e-02	ci right 5.622628e-02	k: 96117	n:1720000
KS ci ratio: 6.518331e-02	ci left: 2.029848e-03	ci right 2.167186e-03	k: 3608	n:1720000
LIN37   1720000 perm   1456 sec   (1181 perm/sec)   p_kst 2.097674e-03   p_cons 5.588198e-02   p_joint 3.482558e-04

Joint ci ratio: 1.596069e-01	ci left: 3.207355e-04	ci right 3.769131e-04	k: 602	n:1730000
Cons ci ratio: 1.224856e-02	ci left: 5.555294e-02	ci right 5.623814e-02	k: 96698	n:1730000
KS ci ratio: 6.496759e-02	ci left: 2.031762e-03	ci right 2.168757e-03	k: 3632	n:1730000
LIN37   1730000 perm   1471 sec   (1176 perm/sec)   p_kst 2.099422e-03   p_cons 5.589480e-02   p_joint 3.479769e-04

Joint ci ratio: 1.469814e-01	ci left: 3.785852e-04	ci right 4.391898e-04	k: 710	n:1740000
Cons ci ratio: 1.221238e-02	ci left: 5.556198e-02	ci right 5.624525e-02	k: 97271	n:1740000
KS ci ratio: 6.478063e-02	ci left: 2.031959e-03	ci right 2.168558e-03	k: 3653	n:1740000
LIN37   1740000 perm   1486 sec   (1171 perm/sec)   p_kst 2.099425e-03   p_cons 5.590287e-02   p_joint 4.080460e-04

Joint ci ratio: 1.466723e-01	ci left: 3.780731e-04	ci right 4.384574e-04	k: 713	n:1750000
Cons ci ratio: 1.217797e-02	ci left: 5.555838e-02	ci right 5.623967e-02	k: 97822	n:1750000
KS ci ratio: 6.462172e-02	ci left: 2.030467e-03	ci right 2.166618e-03	k: 3671	n:1750000
LIN37   1750000 perm   1501 sec   (1166 perm/sec)   p_kst 2.097714e-03   p_cons 5.589829e-02   p_joint 4.074286e-04

Joint ci ratio: 1.464674e-01	ci left: 3.770196e-04	ci right 4.371442e-04	k: 715	n:1760000
Cons ci ratio: 1.214168e-02	ci left: 5.557352e-02	ci right 5.625295e-02	k: 98406	n:1760000
KS ci ratio: 6.444647e-02	ci left: 2.030110e-03	ci right 2.165855e-03	k: 3691	n:1760000
LIN37   1760000 perm   1517 sec   (1160 perm/sec)   p_kst 2.097159e-03   p_cons 5.591250e-02   p_joint 4.062500e-04

Joint ci ratio: 1.460600e-01	ci left: 3.770668e-04	ci right 4.370170e-04	k: 719	n:1770000
Cons ci ratio: 1.210806e-02	ci left: 5.556821e-02	ci right 5.624568e-02	k: 98954	n:1770000
KS ci ratio: 6.423796e-02	ci left: 2.031982e-03	ci right 2.167396e-03	k: 3715	n:1770000
LIN37   1770000 perm   1532 sec   (1155 perm/sec)   p_kst 2.098870e-03   p_cons 5.590621e-02   p_joint 4.062147e-04

Joint ci ratio: 1.454551e-01	ci left: 3.781963e-04	ci right 4.380555e-04	k: 725	n:1780000
Cons ci ratio: 1.207709e-02	ci left: 5.554223e-02	ci right 5.621764e-02	k: 99465	n:1780000
KS ci ratio: 6.402288e-02	ci left: 2.034386e-03	ci right 2.169489e-03	k: 3740	n:1780000
LIN37   1780000 perm   1547 sec   (1150 perm/sec)   p_kst 2.101124e-03   p_cons 5.587921e-02   p_joint 4.073034e-04

Joint ci ratio: 1.449568e-01	ci left: 3.787753e-04	ci right 4.385029e-04	k: 730	n:1790000
Cons ci ratio: 1.204074e-02	ci left: 5.556557e-02	ci right 5.623922e-02	k: 100064	n:1790000
KS ci ratio: 6.380147e-02	ci left: 2.037314e-03	ci right 2.172126e-03	k: 3766	n:1790000
LIN37   1790000 perm   1563 sec   (1145 perm/sec)   p_kst 2.103911e-03   p_cons 5.590168e-02   p_joint 4.078212e-04

Joint ci ratio: 1.498564e-01	ci left: 3.515223e-04	ci right 4.089941e-04	k: 683	n:1800000
Cons ci ratio: 1.200738e-02	ci left: 5.556539e-02	ci right 5.623715e-02	k: 100621	n:1800000
KS ci ratio: 6.363279e-02	ci left: 2.036930e-03	ci right 2.171347e-03	k: 3786	n:1800000
LIN37   1800000 perm   1578 sec   (1140 perm/sec)   p_kst 2.103333e-03   p_cons 5.590056e-02   p_joint 3.794444e-04

Joint ci ratio: 1.493116e-01	ci left: 3.522392e-04	ci right 4.096002e-04	k: 688	n:1810000
Cons ci ratio: 1.197410e-02	ci left: 5.556686e-02	ci right 5.623677e-02	k: 101181	n:1810000
KS ci ratio: 6.347380e-02	ci left: 2.036006e-03	ci right 2.170015e-03	k: 3805	n:1810000
LIN37   1810000 perm   1594 sec   (1136 perm/sec)   p_kst 2.102210e-03   p_cons 5.590110e-02   p_joint 3.801105e-04

Joint ci ratio: 1.490955e-01	ci left: 3.513617e-04	ci right 4.084895e-04	k: 690	n:1820000
Cons ci ratio: 1.194091e-02	ci left: 5.556996e-02	ci right 5.623804e-02	k: 101744	n:1820000
KS ci ratio: 6.331599e-02	ci left: 2.035093e-03	ci right 2.168697e-03	k: 3824	n:1820000
LIN37   1820000 perm   1610 sec   (1131 perm/sec)   p_kst 2.101099e-03   p_cons 5.590330e-02   p_joint 3.791209e-04

Joint ci ratio: 1.488802e-01	ci left: 3.504938e-04	ci right 4.073910e-04	k: 692	n:1830000
Cons ci ratio: 1.190905e-02	ci left: 5.556377e-02	ci right 5.622998e-02	k: 102290	n:1830000
KS ci ratio: 6.315112e-02	ci left: 2.034729e-03	ci right 2.167948e-03	k: 3844	n:1830000
LIN37   1830000 perm   1625 sec   (1126 perm/sec)   p_kst 2.100546e-03   p_cons 5.589617e-02   p_joint 3.781421e-04

Joint ci ratio: 1.433002e-01	ci left: 3.773884e-04	ci right 4.361592e-04	k: 747	n:1840000
Cons ci ratio: 1.187713e-02	ci left: 5.556036e-02	ci right 5.622473e-02	k: 102841	n:1840000
KS ci ratio: 6.297937e-02	ci left: 2.034904e-03	ci right 2.167758e-03	k: 3865	n:1840000
LIN37   1840000 perm   1641 sec   (1121 perm/sec)   p_kst 2.100543e-03   p_cons 5.589185e-02   p_joint 4.059783e-04

Joint ci ratio: 1.429186e-01	ci left: 3.774332e-04	ci right 4.360411e-04	k: 751	n:1850000
Cons ci ratio: 1.184462e-02	ci left: 5.556454e-02	ci right 5.622713e-02	k: 103406	n:1850000
KS ci ratio: 6.284953e-02	ci left: 2.032417e-03	ci right 2.164825e-03	k: 3881	n:1850000
LIN37   1850000 perm   1657 sec   (1116 perm/sec)   p_kst 2.097838e-03   p_cons 5.589514e-02   p_joint 4.059459e-04

Joint ci ratio: 1.516421e-01	ci left: 3.319049e-04	ci right 3.868747e-04	k: 667	n:1860000
Cons ci ratio: 1.181165e-02	ci left: 5.557510e-02	ci right 5.623596e-02	k: 103983	n:1860000
KS ci ratio: 6.263200e-02	ci left: 2.035778e-03	ci right 2.167930e-03	k: 3908	n:1860000
LIN37   1860000 perm   1673 sec   (1112 perm/sec)   p_kst 2.101075e-03   p_cons 5.590484e-02   p_joint 3.586022e-04

Joint ci ratio: 1.510777e-01	ci left: 3.327025e-04	ci right 3.875808e-04	k: 672	n:1870000
Cons ci ratio: 1.178158e-02	ci left: 5.556209e-02	ci right 5.622110e-02	k: 104516	n:1870000
KS ci ratio: 6.248834e-02	ci left: 2.034367e-03	ci right 2.166113e-03	k: 3926	n:1870000
LIN37   1870000 perm   1689 sec   (1107 perm/sec)   p_kst 2.099465e-03   p_cons 5.589091e-02   p_joint 3.593583e-04

Joint ci ratio: 1.507421e-01	ci left: 3.324683e-04	ci right 3.871751e-04	k: 675	n:1880000
Cons ci ratio: 1.175055e-02	ci left: 5.555983e-02	ci right 5.621707e-02	k: 105069	n:1880000
KS ci ratio: 6.229821e-02	ci left: 2.036113e-03	ci right 2.167556e-03	k: 3950	n:1880000
LIN37   1880000 perm   1705 sec   (1103 perm/sec)   p_kst 2.101064e-03   p_cons 5.588777e-02   p_joint 3.590426e-04

Joint ci ratio: 1.499675e-01	ci left: 3.342736e-04	ci right 3.889695e-04	k: 682	n:1890000
Cons ci ratio: 1.171965e-02	ci left: 5.555865e-02	ci right 5.621414e-02	k: 105624	n:1890000
KS ci ratio: 6.203947e-02	ci left: 2.042529e-03	ci right 2.173819e-03	k: 3983	n:1890000
LIN37   1890000 perm   1721 sec   (1098 perm/sec)   p_kst 2.107407e-03   p_cons 5.588571e-02   p_joint 3.608466e-04

Joint ci ratio: 1.498579e-01	ci left: 3.330208e-04	ci right 3.874684e-04	k: 683	n:1900000
Cons ci ratio: 1.168777e-02	ci left: 5.556851e-02	ci right 5.622232e-02	k: 106200	n:1900000
KS ci ratio: 6.183794e-02	ci left: 2.045251e-03	ci right 2.176274e-03	k: 4009	n:1900000
LIN37   1900000 perm   1737 sec   (1094 perm/sec)   p_kst 2.110000e-03   p_cons 5.589474e-02   p_joint 3.594737e-04

Joint ci ratio: 1.494216e-01	ci left: 3.332931e-04	ci right 3.876123e-04	k: 687	n:1910000
Cons ci ratio: 1.165523e-02	ci left: 5.558662e-02	ci right 5.623881e-02	k: 106792	n:1910000
KS ci ratio: 6.168432e-02	ci left: 2.044852e-03	ci right 2.175513e-03	k: 4029	n:1910000
LIN37   1910000 perm   1754 sec   (1089 perm/sec)   p_kst 2.109424e-03   p_cons 5.591204e-02   p_joint 3.596859e-04

Joint ci ratio: 1.488816e-01	ci left: 3.340642e-04	ci right 3.882948e-04	k: 692	n:1920000
Cons ci ratio: 1.162444e-02	ci left: 5.559104e-02	ci right 5.624155e-02	k: 107358	n:1920000
KS ci ratio: 6.151662e-02	ci left: 2.045484e-03	ci right 2.175817e-03	k: 4051	n:1920000
LIN37   1920000 perm   1770 sec   (1085 perm/sec)   p_kst 2.109896e-03   p_cons 5.591562e-02   p_joint 3.604167e-04

Joint ci ratio: 1.480294e-01	ci left: 3.363244e-04	ci right 3.905818e-04	k: 700	n:1930000
Cons ci ratio: 1.159287e-02	ci left: 5.560472e-02	ci right 5.625361e-02	k: 107942	n:1930000
KS ci ratio: 6.131259e-02	ci left: 2.048660e-03	ci right 2.178748e-03	k: 4078	n:1930000
LIN37   1930000 perm   1787 sec   (1080 perm/sec)   p_kst 2.112953e-03   p_cons 5.592850e-02   p_joint 3.626943e-04

Joint ci ratio: 1.478188e-01	ci left: 3.355836e-04	ci right 3.896375e-04	k: 702	n:1940000
Cons ci ratio: 1.156478e-02	ci left: 5.558896e-02	ci right 5.623608e-02	k: 108469	n:1940000
KS ci ratio: 6.118529e-02	ci left: 2.046729e-03	ci right 2.176414e-03	k: 4095	n:1940000
LIN37   1940000 perm   1803 sec   (1076 perm/sec)   p_kst 2.110825e-03   p_cons 5.591186e-02   p_joint 3.618557e-04

Joint ci ratio: 1.475044e-01	ci left: 3.353442e-04	ci right 3.892347e-04	k: 705	n:1950000
Cons ci ratio: 1.153252e-02	ci left: 5.561325e-02	ci right 5.625883e-02	k: 109074	n:1950000
KS ci ratio: 6.102162e-02	ci left: 2.047342e-03	ci right 2.176707e-03	k: 4117	n:1950000
LIN37   1950000 perm   1820 sec   (1072 perm/sec)   p_kst 2.111282e-03   p_cons 5.593538e-02   p_joint 3.615385e-04

Joint ci ratio: 1.469848e-01	ci left: 3.360904e-04	ci right 3.898937e-04	k: 710	n:1960000
Cons ci ratio: 1.150230e-02	ci left: 5.562102e-02	ci right 5.626499e-02	k: 109647	n:1960000
KS ci ratio: 6.088874e-02	ci left: 2.045940e-03	ci right 2.174925e-03	k: 4135	n:1960000
LIN37   1960000 perm   1836 sec   (1067 perm/sec)   p_kst 2.109694e-03   p_cons 5.594235e-02   p_joint 3.622449e-04

Joint ci ratio: 1.463684e-01	ci left: 3.373182e-04	ci right 3.910719e-04	k: 716	n:1970000
Cons ci ratio: 1.147089e-02	ci left: 5.564187e-02	ci right 5.628431e-02	k: 110246	n:1970000
KS ci ratio: 6.071280e-02	ci left: 2.047553e-03	ci right 2.176253e-03	k: 4159	n:1970000
LIN37   1970000 perm   1853 sec   (1063 perm/sec)   p_kst 2.111168e-03   p_cons 5.596244e-02   p_joint 3.634518e-04

Joint ci ratio: 1.459618e-01	ci left: 3.375609e-04	ci right 3.911908e-04	k: 720	n:1980000
Cons ci ratio: 1.144192e-02	ci left: 5.564237e-02	ci right 5.628318e-02	k: 110805	n:1980000
KS ci ratio: 6.061101e-02	ci left: 2.044175e-03	ci right 2.172440e-03	k: 4173	n:1980000
LIN37   1980000 perm   1870 sec   (1059 perm/sec)   p_kst 2.107576e-03   p_cons 5.596212e-02   p_joint 3.636364e-04

Joint ci ratio: 1.456591e-01	ci left: 3.373172e-04	ci right 3.907875e-04	k: 723	n:1990000
Cons ci ratio: 1.141360e-02	ci left: 5.563885e-02	ci right 5.627802e-02	k: 111356	n:1990000
KS ci ratio: 6.045189e-02	ci left: 2.044791e-03	ci right 2.172746e-03	k: 4195	n:1990000
LIN37   1990000 perm   1887 sec   (1055 perm/sec)   p_kst 2.108040e-03   p_cons 5.595779e-02   p_joint 3.633166e-04

Joint ci ratio: 1.452584e-01	ci left: 3.375578e-04	ci right 3.909063e-04	k: 727	n:2000000
Cons ci ratio: 1.138291e-02	ci left: 5.565930e-02	ci right 5.629698e-02	k: 111955	n:2000000
KS ci ratio: 6.032269e-02	ci left: 2.043431e-03	ci right 2.171018e-03	k: 4213	n:2000000
LIN37   2000000 perm   1904 sec   (1051 perm/sec)   p_kst 2.106500e-03   p_cons 5.597750e-02   p_joint 3.635000e-04

Joint ci ratio: 1.451588e-01	ci left: 3.363578e-04	ci right 3.894771e-04	k: 728	n:2010000
Cons ci ratio: 1.135401e-02	ci left: 5.566517e-02	ci right 5.630129e-02	k: 112525	n:2010000
KS ci ratio: 6.018719e-02	ci left: 2.042575e-03	ci right 2.169812e-03	k: 4232	n:2010000
LIN37   2010000 perm   1921 sec   (1046 perm/sec)   p_kst 2.105473e-03   p_cons 5.598259e-02   p_joint 3.621891e-04

Joint ci ratio: 1.447622e-01	ci left: 3.366011e-04	ci right 3.896010e-04	k: 732	n:2020000
Cons ci ratio: 1.132576e-02	ci left: 5.566703e-02	ci right 5.630157e-02	k: 113087	n:2020000
KS ci ratio: 6.005259e-02	ci left: 2.041727e-03	ci right 2.168618e-03	k: 4251	n:2020000
LIN37   2020000 perm   1938 sec   (1042 perm/sec)   p_kst 2.104455e-03   p_cons 5.598366e-02   p_joint 3.623762e-04

Joint ci ratio: 1.447623e-01	ci left: 3.349429e-04	ci right 3.876818e-04	k: 732	n:2030000
Cons ci ratio: 1.129656e-02	ci left: 5.567968e-02	ci right 5.631272e-02	k: 113671	n:2030000
KS ci ratio: 5.991187e-02	ci left: 2.041374e-03	ci right 2.167935e-03	k: 4271	n:2030000
LIN37   2030000 perm   1955 sec   (1038 perm/sec)   p_kst 2.103941e-03   p_cons 5.599557e-02   p_joint 3.605911e-04

Joint ci ratio: 1.442711e-01	ci left: 3.356634e-04	ci right 3.883209e-04	k: 737	n:2040000
Cons ci ratio: 1.126815e-02	ci left: 5.568683e-02	ci right 5.631835e-02	k: 114244	n:2040000
KS ci ratio: 5.974424e-02	ci left: 2.042956e-03	ci right 2.169248e-03	k: 4295	n:2040000
LIN37   2040000 perm   1972 sec   (1034 perm/sec)   p_kst 2.105392e-03   p_cons 5.600196e-02   p_joint 3.612745e-04

Joint ci ratio: 1.438816e-01	ci left: 3.359069e-04	ci right 3.884482e-04	k: 741	n:2050000
Cons ci ratio: 1.123960e-02	ci left: 5.569732e-02	ci right 5.632735e-02	k: 114824	n:2050000
KS ci ratio: 5.960567e-02	ci left: 2.042601e-03	ci right 2.168568e-03	k: 4315	n:2050000
LIN37   2050000 perm   1989 sec   (1030 perm/sec)   p_kst 2.104878e-03   p_cons 5.601171e-02   p_joint 3.614634e-04

Joint ci ratio: 1.435917e-01	ci left: 3.356803e-04	ci right 3.880712e-04	k: 744	n:2060000
Cons ci ratio: 1.120988e-02	ci left: 5.572078e-02	ci right 5.634940e-02	k: 115431	n:2060000
KS ci ratio: 5.948181e-02	ci left: 2.041293e-03	ci right 2.166909e-03	k: 4333	n:2060000
LIN37   2060000 perm   2007 sec   (1027 perm/sec)   p_kst 2.103398e-03   p_cons 5.603447e-02   p_joint 3.611650e-04

Joint ci ratio: 1.433994e-01	ci left: 3.349901e-04	ci right 3.871973e-04	k: 746	n:2070000
Cons ci ratio: 1.118411e-02	ci left: 5.570885e-02	ci right 5.633587e-02	k: 115965	n:2070000
KS ci ratio: 5.933140e-02	ci left: 2.041902e-03	ci right 2.167227e-03	k: 4355	n:2070000
LIN37   2070000 perm   2025 sec   (1022 perm/sec)   p_kst 2.103865e-03   p_cons 5.602174e-02   p_joint 3.603865e-04

Joint ci ratio: 1.427321e-01	ci left: 3.366245e-04	ci right 3.888215e-04	k: 753	n:2080000
Cons ci ratio: 1.115766e-02	ci left: 5.570518e-02	ci right 5.633067e-02	k: 116516	n:2080000
KS ci ratio: 5.916858e-02	ci left: 2.043453e-03	ci right 2.168517e-03	k: 4379	n:2080000
LIN37   2080000 perm   2042 sec   (1018 perm/sec)   p_kst 2.105288e-03   p_cons 5.601731e-02   p_joint 3.620192e-04

Joint ci ratio: 1.425432e-01	ci left: 3.359366e-04	ci right 3.879522e-04	k: 755	n:2090000
Cons ci ratio: 1.113059e-02	ci left: 5.570918e-02	ci right 5.633320e-02	k: 117083	n:2090000
KS ci ratio: 5.900039e-02	ci left: 2.045460e-03	ci right 2.170280e-03	k: 4404	n:2090000
LIN37   2090000 perm   2060 sec   (1015 perm/sec)   p_kst 2.107177e-03   p_cons 5.602057e-02   p_joint 3.612440e-04

Joint ci ratio: 1.422612e-01	ci left: 3.357146e-04	ci right 3.875842e-04	k: 758	n:2100000
Cons ci ratio: 1.110472e-02	ci left: 5.570365e-02	ci right 5.632614e-02	k: 117630	n:2100000
KS ci ratio: 5.886025e-02	ci left: 2.045573e-03	ci right 2.170092e-03	k: 4425	n:2100000
LIN37   2100000 perm   2078 sec   (1011 perm/sec)   p_kst 2.107143e-03   p_cons 5.601429e-02   p_joint 3.609524e-04

Joint ci ratio: 1.418878e-01	ci left: 3.359519e-04	ci right 3.877104e-04	k: 762	n:2110000
Cons ci ratio: 1.107809e-02	ci left: 5.570716e-02	ci right 5.632819e-02	k: 118196	n:2110000
KS ci ratio: 5.872111e-02	ci left: 2.045685e-03	ci right 2.169906e-03	k: 4446	n:2110000
LIN37   2110000 perm   2096 sec   (1007 perm/sec)   p_kst 2.107109e-03   p_cons 5.601706e-02   p_joint 3.611374e-04

Joint ci ratio: 1.415174e-01	ci left: 3.361871e-04	ci right 3.878352e-04	k: 766	n:2120000
Cons ci ratio: 1.105322e-02	ci left: 5.569558e-02	ci right 5.631507e-02	k: 118730	n:2120000
KS ci ratio: 5.862899e-02	ci left: 2.042542e-03	ci right 2.166372e-03	k: 4460	n:2120000
LIN37   2120000 perm   2113 sec   (1003 perm/sec)   p_kst 2.103774e-03   p_cons 5.600472e-02   p_joint 3.613208e-04

Joint ci ratio: 1.362029e-01	ci left: 3.622531e-04	ci right 4.156464e-04	k: 827	n:2130000
Cons ci ratio: 1.102724e-02	ci left: 5.569628e-02	ci right 5.631432e-02	k: 119290	n:2130000
KS ci ratio: 5.845882e-02	ci left: 2.044980e-03	ci right 2.168586e-03	k: 4486	n:2130000
LIN37   2130000 perm   2132 sec   (999 perm/sec)   p_kst 2.106103e-03   p_cons 5.600469e-02   p_joint 3.882629e-04

Joint ci ratio: 1.357120e-01	ci left: 3.632687e-04	ci right 4.166032e-04	k: 833	n:2140000
Cons ci ratio: 1.100262e-02	ci left: 5.568579e-02	ci right 5.630233e-02	k: 119826	n:2140000
KS ci ratio: 5.830306e-02	ci left: 2.046476e-03	ci right 2.169831e-03	k: 4510	n:2140000
LIN37   2140000 perm   2150 sec   (995 perm/sec)   p_kst 2.107477e-03   p_cons 5.599346e-02   p_joint 3.892523e-04

Joint ci ratio: 1.355496e-01	ci left: 3.624777e-04	ci right 4.156273e-04	k: 835	n:2150000
Cons ci ratio: 1.097767e-02	ci left: 5.568004e-02	ci right 5.629511e-02	k: 120372	n:2150000
KS ci ratio: 5.818713e-02	ci left: 2.045207e-03	ci right 2.168233e-03	k: 4528	n:2150000
LIN37   2150000 perm   2168 sec   (992 perm/sec)   p_kst 2.106047e-03   p_cons 5.598698e-02   p_joint 3.883721e-04

Joint ci ratio: 1.351461e-01	ci left: 3.630360e-04	ci right 4.160962e-04	k: 840	n:2160000
Cons ci ratio: 1.095136e-02	ci left: 5.568913e-02	ci right 5.630281e-02	k: 120950	n:2160000
KS ci ratio: 5.807828e-02	ci left: 2.043495e-03	ci right 2.166180e-03	k: 4545	n:2160000
LIN37   2160000 perm   2186 sec   (988 perm/sec)   p_kst 2.104167e-03   p_cons 5.599537e-02   p_joint 3.888889e-04

Joint ci ratio: 1.347461e-01	ci left: 3.635894e-04	ci right 4.165606e-04	k: 845	n:2170000
Cons ci ratio: 1.092600e-02	ci left: 5.569077e-02	ci right 5.630304e-02	k: 121512	n:2170000
KS ci ratio: 5.792554e-02	ci left: 2.044977e-03	ci right 2.167417e-03	k: 4569	n:2170000
LIN37   2170000 perm   2205 sec   (984 perm/sec)   p_kst 2.105530e-03   p_cons 5.599631e-02   p_joint 3.894009e-04

Joint ci ratio: 1.343496e-01	ci left: 3.641380e-04	ci right 4.170205e-04	k: 850	n:2180000
Cons ci ratio: 1.089968e-02	ci left: 5.570339e-02	ci right 5.631431e-02	k: 122098	n:2180000
KS ci ratio: 5.778030e-02	ci left: 2.045995e-03	ci right 2.168178e-03	k: 4592	n:2180000
LIN37   2180000 perm   2223 sec   (980 perm/sec)   p_kst 2.106422e-03   p_cons 5.600826e-02   p_joint 3.899083e-04

Joint ci ratio: 1.338784e-01	ci left: 3.651230e-04	ci right 4.179479e-04	k: 856	n:2190000
Cons ci ratio: 1.087477e-02	ci left: 5.570404e-02	ci right 5.631357e-02	k: 122658	n:2190000
KS ci ratio: 5.764240e-02	ci left: 2.046553e-03	ci right 2.168468e-03	k: 4614	n:2190000
LIN37   2190000 perm   2242 sec   (977 perm/sec)   p_kst 2.106849e-03   p_cons 5.600822e-02   p_joint 3.908676e-04

Joint ci ratio: 1.338005e-01	ci left: 3.639027e-04	ci right 4.165179e-04	k: 857	n:2200000
Cons ci ratio: 1.085060e-02	ci left: 5.569926e-02	ci right 5.630737e-02	k: 123206	n:2200000
KS ci ratio: 5.752413e-02	ci left: 2.045762e-03	ci right 2.167372e-03	k: 4633	n:2200000
LIN37   2200000 perm   2260 sec   (973 perm/sec)   p_kst 2.105909e-03   p_cons 5.600273e-02   p_joint 3.895455e-04

Joint ci ratio: 1.331040e-01	ci left: 3.661926e-04	ci right 4.188415e-04	k: 866	n:2210000
Cons ci ratio: 1.082532e-02	ci left: 5.570670e-02	ci right 5.631347e-02	k: 123781	n:2210000
KS ci ratio: 5.734487e-02	ci left: 2.049439e-03	ci right 2.170876e-03	k: 4662	n:2210000
LIN37   2210000 perm   2279 sec   (970 perm/sec)   p_kst 2.109502e-03   p_cons 5.600950e-02   p_joint 3.918552e-04

Joint ci ratio: 1.327980e-01	ci left: 3.662849e-04	ci right 4.188165e-04	k: 870	n:2220000
Cons ci ratio: 1.080115e-02	ci left: 5.570509e-02	ci right 5.631048e-02	k: 124336	n:2220000
KS ci ratio: 5.724068e-02	ci left: 2.047755e-03	ci right 2.168865e-03	k: 4679	n:2220000
LIN37   2220000 perm   2297 sec   (966 perm/sec)   p_kst 2.107658e-03   p_cons 5.600721e-02   p_joint 3.918919e-04

Joint ci ratio: 1.323429e-01	ci left: 3.672437e-04	ci right 4.197181e-04	k: 876	n:2230000
Cons ci ratio: 1.077650e-02	ci left: 5.570977e-02	ci right 5.631381e-02	k: 124905	n:2230000
KS ci ratio: 5.707620e-02	ci left: 2.050507e-03	ci right 2.171419e-03	k: 4706	n:2230000
LIN37   2230000 perm   2316 sec   (963 perm/sec)   p_kst 2.110314e-03   p_cons 5.601121e-02   p_joint 3.928251e-04

Joint ci ratio: 1.318925e-01	ci left: 3.681943e-04	ci right 4.206114e-04	k: 882	n:2240000
Cons ci ratio: 1.075238e-02	ci left: 5.571083e-02	ci right 5.631353e-02	k: 125466	n:2240000
KS ci ratio: 5.691915e-02	ci left: 2.052795e-03	ci right 2.173498e-03	k: 4732	n:2240000
LIN37   2240000 perm   2336 sec   (959 perm/sec)   p_kst 2.112500e-03   p_cons 5.601161e-02   p_joint 3.937500e-04

Joint ci ratio: 1.314466e-01	ci left: 3.691367e-04	ci right 4.214965e-04	k: 888	n:2250000
Cons ci ratio: 1.072792e-02	ci left: 5.571677e-02	ci right 5.631815e-02	k: 126038	n:2250000
KS ci ratio: 5.680527e-02	ci left: 2.051996e-03	ci right 2.172402e-03	k: 4751	n:2250000
LIN37   2250000 perm   2355 sec   (956 perm/sec)   p_kst 2.111556e-03   p_cons 5.601689e-02   p_joint 3.946667e-04

Joint ci ratio: 1.235635e-01	ci left: 4.176243e-04	ci right 4.730494e-04	k: 1005	n:2260000
Cons ci ratio: 1.070430e-02	ci left: 5.571604e-02	ci right 5.631608e-02	k: 126595	n:2260000
KS ci ratio: 5.666233e-02	ci left: 2.053385e-03	ci right 2.173560e-03	k: 4775	n:2260000
LIN37   2260000 perm   2374 sec   (952 perm/sec)   p_kst 2.112832e-03   p_cons 5.601549e-02   p_joint 4.446903e-04

Joint ci ratio: 1.234410e-01	ci left: 4.166383e-04	ci right 4.718738e-04	k: 1007	n:2270000
Cons ci ratio: 1.068022e-02	ci left: 5.572146e-02	ci right 5.632020e-02	k: 127166	n:2270000
KS ci ratio: 5.650277e-02	ci left: 2.056066e-03	ci right 2.176047e-03	k: 4802	n:2270000
LIN37   2270000 perm   2393 sec   (949 perm/sec)   p_kst 2.115419e-03   p_cons 5.602026e-02   p_joint 4.436123e-04

Joint ci ratio: 1.234411e-01	ci left: 4.148109e-04	ci right 4.698042e-04	k: 1007	n:2280000
Cons ci ratio: 1.065691e-02	ci left: 5.572071e-02	ci right 5.631813e-02	k: 127723	n:2280000
KS ci ratio: 5.639137e-02	ci left: 2.055263e-03	ci right 2.174954e-03	k: 4821	n:2280000
LIN37   2280000 perm   2412 sec   (945 perm/sec)   p_kst 2.114474e-03   p_cons 5.601886e-02   p_joint 4.416667e-04

Joint ci ratio: 1.230146e-01	ci left: 4.159621e-04	ci right 4.709036e-04	k: 1014	n:2290000
Cons ci ratio: 1.063450e-02	ci left: 5.571257e-02	ci right 5.630864e-02	k: 128263	n:2290000
KS ci ratio: 5.625734e-02	ci left: 2.056191e-03	ci right 2.175642e-03	k: 4844	n:2290000
LIN37   2290000 perm   2431 sec   (942 perm/sec)   p_kst 2.115284e-03   p_cons 5.601004e-02   p_joint 4.427948e-04

Joint ci ratio: 1.226526e-01	ci left: 4.166821e-04	ci right 4.715450e-04	k: 1020	n:2300000
Cons ci ratio: 1.061014e-02	ci left: 5.572532e-02	ci right 5.632015e-02	k: 128851	n:2300000
KS ci ratio: 5.611271e-02	ci left: 2.057968e-03	ci right 2.177205e-03	k: 4869	n:2300000
LIN37   2300000 perm   2450 sec   (939 perm/sec)   p_kst 2.116957e-03   p_cons 5.602217e-02   p_joint 4.434783e-04

Joint ci ratio: 1.225327e-01	ci left: 4.157175e-04	ci right 4.703960e-04	k: 1022	n:2310000
Cons ci ratio: 1.058655e-02	ci left: 5.573191e-02	ci right 5.632548e-02	k: 129425	n:2310000
KS ci ratio: 5.601508e-02	ci left: 2.056315e-03	ci right 2.175242e-03	k: 4886	n:2310000
LIN37   2310000 perm   2469 sec   (935 perm/sec)   p_kst 2.115152e-03   p_cons 5.602814e-02   p_joint 4.424242e-04

Joint ci ratio: 1.222938e-01	ci left: 4.155970e-04	ci right 4.701453e-04	k: 1026	n:2320000
Cons ci ratio: 1.056373e-02	ci left: 5.573243e-02	ci right 5.632472e-02	k: 129985	n:2320000
KS ci ratio: 5.588941e-02	ci left: 2.056801e-03	ci right 2.175481e-03	k: 4908	n:2320000
LIN37   2320000 perm   2489 sec   (932 perm/sec)   p_kst 2.115517e-03   p_cons 5.602802e-02   p_joint 4.422414e-04

Joint ci ratio: 1.220564e-01	ci left: 4.154776e-04	ci right 4.698967e-04	k: 1030	n:2330000
Cons ci ratio: 1.054117e-02	ci left: 5.573166e-02	ci right 5.632267e-02	k: 130542	n:2330000
KS ci ratio: 5.581565e-02	ci left: 2.053475e-03	ci right 2.171802e-03	k: 4921	n:2330000
LIN37   2330000 perm   2509 sec   (929 perm/sec)   p_kst 2.112017e-03   p_cons 5.602661e-02   p_joint 4.420601e-04

Joint ci ratio: 1.219382e-01	ci left: 4.145306e-04	ci right 4.687694e-04	k: 1032	n:2340000
Cons ci ratio: 1.051834e-02	ci left: 5.573516e-02	ci right 5.632492e-02	k: 131109	n:2340000
KS ci ratio: 5.566311e-02	ci left: 2.056078e-03	ci right 2.174220e-03	k: 4948	n:2340000
LIN37   2340000 perm   2528 sec   (926 perm/sec)   p_kst 2.114530e-03   p_cons 5.602949e-02   p_joint 4.410256e-04

Joint ci ratio: 1.215856e-01	ci left: 4.152421e-04	ci right 4.694055e-04	k: 1038	n:2350000
Cons ci ratio: 1.049726e-02	ci left: 5.572250e-02	ci right 5.631093e-02	k: 131638	n:2350000
KS ci ratio: 5.551742e-02	ci left: 2.058238e-03	ci right 2.176185e-03	k: 4974	n:2350000
LIN37   2350000 perm   2547 sec   (922 perm/sec)   p_kst 2.116596e-03   p_cons 5.601617e-02   p_joint 4.417021e-04

Joint ci ratio: 1.214105e-01	ci left: 4.147152e-04	ci right 4.687263e-04	k: 1041	n:2360000
Cons ci ratio: 1.047483e-02	ci left: 5.572475e-02	ci right 5.631194e-02	k: 132202	n:2360000
KS ci ratio: 5.539506e-02	ci left: 2.058710e-03	ci right 2.176415e-03	k: 4996	n:2360000
LIN37   2360000 perm   2567 sec   (919 perm/sec)   p_kst 2.116949e-03   p_cons 5.601780e-02   p_joint 4.411017e-04

Joint ci ratio: 1.212942e-01	ci left: 4.137836e-04	ci right 4.676181e-04	k: 1043	n:2370000
Cons ci ratio: 1.045255e-02	ci left: 5.572697e-02	ci right 5.631293e-02	k: 132766	n:2370000
KS ci ratio: 5.527903e-02	ci left: 2.058761e-03	ci right 2.176216e-03	k: 5017	n:2370000
LIN37   2370000 perm   2587 sec   (916 perm/sec)   p_kst 2.116878e-03   p_cons 5.601941e-02   p_joint 4.400844e-04

Joint ci ratio: 1.208320e-01	ci left: 4.153046e-04	ci right 4.691164e-04	k: 1051	n:2380000
Cons ci ratio: 1.042942e-02	ci left: 5.573924e-02	ci right 5.632402e-02	k: 133354	n:2380000
KS ci ratio: 5.519117e-02	ci left: 2.056741e-03	ci right 2.173887e-03	k: 5033	n:2380000
LIN37   2380000 perm   2606 sec   (913 perm/sec)   p_kst 2.114706e-03   p_cons 5.603109e-02   p_joint 4.415966e-04

Joint ci ratio: 1.206602e-01	ci left: 4.147842e-04	ci right 4.684467e-04	k: 1054	n:2390000
Cons ci ratio: 1.040891e-02	ci left: 5.572637e-02	ci right 5.630986e-02	k: 133882	n:2390000
KS ci ratio: 5.505459e-02	ci left: 2.058452e-03	ci right 2.175396e-03	k: 5058	n:2390000
LIN37   2390000 perm   2626 sec   (910 perm/sec)   p_kst 2.116318e-03   p_cons 5.601757e-02   p_joint 4.410042e-04

Joint ci ratio: 1.203185e-01	ci left: 4.154806e-04	ci right 4.690701e-04	k: 1060	n:2400000
Cons ci ratio: 1.038786e-02	ci left: 5.572025e-02	ci right 5.630249e-02	k: 134426	n:2400000
KS ci ratio: 5.495694e-02	ci left: 2.057271e-03	ci right 2.173935e-03	k: 5076	n:2400000
LIN37   2400000 perm   2646 sec   (907 perm/sec)   p_kst 2.115000e-03   p_cons 5.601083e-02   p_joint 4.416667e-04

Joint ci ratio: 1.200359e-01	ci left: 4.157689e-04	ci right 4.692608e-04	k: 1065	n:2410000
Cons ci ratio: 1.036694e-02	ci left: 5.571418e-02	ci right 5.629518e-02	k: 134970	n:2410000
KS ci ratio: 5.484364e-02	ci left: 2.057329e-03	ci right 2.173748e-03	k: 5097	n:2410000
LIN37   2410000 perm   2666 sec   (904 perm/sec)   p_kst 2.114938e-03   p_cons 5.600415e-02   p_joint 4.419087e-04

Joint ci ratio: 1.198674e-01	ci left: 4.152533e-04	ci right 4.685985e-04	k: 1068	n:2420000
Cons ci ratio: 1.034732e-02	ci left: 5.569622e-02	ci right 5.627592e-02	k: 135485	n:2420000
KS ci ratio: 5.477931e-02	ci left: 2.053718e-03	ci right 2.169792e-03	k: 5109	n:2420000
LIN37   2420000 perm   2687 sec   (901 perm/sec)   p_kst 2.111157e-03   p_cons 5.598554e-02   p_joint 4.413223e-04

Joint ci ratio: 1.196438e-01	ci left: 4.151413e-04	ci right 4.683655e-04	k: 1072	n:2430000
Cons ci ratio: 1.032737e-02	ci left: 5.568291e-02	ci right 5.626136e-02	k: 136011	n:2430000
KS ci ratio: 5.467243e-02	ci left: 2.053385e-03	ci right 2.169206e-03	k: 5129	n:2430000
LIN37   2430000 perm   2707 sec   (898 perm/sec)   p_kst 2.110700e-03   p_cons 5.597160e-02   p_joint 4.411523e-04

Joint ci ratio: 1.194214e-01	ci left: 4.150302e-04	ci right 4.681343e-04	k: 1076	n:2440000
Cons ci ratio: 1.030658e-02	ci left: 5.567953e-02	ci right 5.625677e-02	k: 136561	n:2440000
KS ci ratio: 5.459806e-02	ci left: 2.050628e-03	ci right 2.166132e-03	k: 5143	n:2440000
LIN37   2440000 perm   2727 sec   (895 perm/sec)   p_kst 2.107787e-03   p_cons 5.596762e-02   p_joint 4.409836e-04

Joint ci ratio: 1.190901e-01	ci left: 4.157121e-04	ci right 4.687456e-04	k: 1082	n:2450000
Cons ci ratio: 1.028579e-02	ci left: 5.567740e-02	ci right 5.625344e-02	k: 137114	n:2450000
KS ci ratio: 5.446583e-02	ci left: 2.052324e-03	ci right 2.167634e-03	k: 5168	n:2450000
LIN37   2450000 perm   2747 sec   (892 perm/sec)   p_kst 2.109388e-03   p_cons 5.596490e-02   p_joint 4.416327e-04

Joint ci ratio: 1.189256e-01	ci left: 4.152054e-04	ci right 4.680959e-04	k: 1085	n:2460000
Cons ci ratio: 1.026528e-02	ci left: 5.567367e-02	ci right 5.624852e-02	k: 137663	n:2460000
KS ci ratio: 5.434503e-02	ci left: 2.053203e-03	ci right 2.168299e-03	k: 5191	n:2460000
LIN37   2460000 perm   2768 sec   (889 perm/sec)   p_kst 2.110163e-03   p_cons 5.596057e-02   p_joint 4.410569e-04

Joint ci ratio: 1.186527e-01	ci left: 4.154886e-04	ci right 4.682852e-04	k: 1090	n:2470000
Cons ci ratio: 1.024442e-02	ci left: 5.567481e-02	ci right 5.624850e-02	k: 138224	n:2470000
KS ci ratio: 5.422504e-02	ci left: 2.054076e-03	ci right 2.168959e-03	k: 5214	n:2470000
LIN37   2470000 perm   2788 sec   (886 perm/sec)   p_kst 2.110931e-03   p_cons 5.596113e-02   p_joint 4.412955e-04

Joint ci ratio: 1.185442e-01	ci left: 4.145958e-04	ci right 4.672273e-04	k: 1092	n:2480000
Cons ci ratio: 1.022346e-02	ci left: 5.567836e-02	ci right 5.625090e-02	k: 138791	n:2480000
KS ci ratio: 5.410584e-02	ci left: 2.054942e-03	ci right 2.169613e-03	k: 5237	n:2480000
LIN37   2480000 perm   2809 sec   (883 perm/sec)   p_kst 2.111694e-03   p_cons 5.596411e-02   p_joint 4.403226e-04

Joint ci ratio: 1.183279e-01	ci left: 4.144895e-04	ci right 4.670049e-04	k: 1096	n:2490000
Cons ci ratio: 1.020360e-02	ci left: 5.567187e-02	ci right 5.624322e-02	k: 139333	n:2490000
KS ci ratio: 5.400800e-02	ci left: 2.054217e-03	ci right 2.168633e-03	k: 5256	n:2490000
LIN37   2490000 perm   2829 sec   (880 perm/sec)   p_kst 2.110843e-03   p_cons 5.595703e-02   p_joint 4.401606e-04

Joint ci ratio: 1.181664e-01	ci left: 4.139961e-04	ci right 4.663724e-04	k: 1099	n:2500000
Cons ci ratio: 1.018192e-02	ci left: 5.568538e-02	ci right 5.625565e-02	k: 139925	n:2500000
KS ci ratio: 5.389533e-02	ci left: 2.054681e-03	ci right 2.168877e-03	k: 5278	n:2500000
LIN37   2500000 perm   2850 sec   (877 perm/sec)   p_kst 2.111200e-03   p_cons 5.597000e-02   p_joint 4.396000e-04

Joint ci ratio: 1.180056e-01	ci left: 4.135066e-04	ci right 4.657448e-04	k: 1102	n:2510000
Cons ci ratio: 1.016157e-02	ci left: 5.568646e-02	ci right 5.625560e-02	k: 140486	n:2510000
KS ci ratio: 5.378845e-02	ci left: 2.054749e-03	ci right 2.168715e-03	k: 5299	n:2510000
LIN37   2510000 perm   2870 sec   (874 perm/sec)   p_kst 2.111155e-03   p_cons 5.597052e-02   p_joint 4.390438e-04

Joint ci ratio: 1.178455e-01	ci left: 4.130211e-04	ci right 4.651222e-04	k: 1105	n:2520000
Cons ci ratio: 1.014286e-02	ci left: 5.567170e-02	ci right 5.623964e-02	k: 141007	n:2520000
KS ci ratio: 5.367715e-02	ci left: 2.055208e-03	ci right 2.168957e-03	k: 5321	n:2520000
LIN37   2520000 perm   2891 sec   (872 perm/sec)   p_kst 2.111508e-03   p_cons 5.595516e-02   p_joint 4.384921e-04

Joint ci ratio: 1.177392e-01	ci left: 4.121558e-04	ci right 4.640976e-04	k: 1107	n:2530000
Cons ci ratio: 1.012225e-02	ci left: 5.567796e-02	ci right 5.624480e-02	k: 141581	n:2530000
KS ci ratio: 5.356152e-02	ci left: 2.056054e-03	ci right 2.169597e-03	k: 5344	n:2530000
LIN37   2530000 perm   2913 sec   (869 perm/sec)   p_kst 2.112253e-03   p_cons 5.596087e-02   p_joint 4.375494e-04

Joint ci ratio: 1.174216e-01	ci left: 4.128259e-04	ci right 4.647021e-04	k: 1113	n:2540000
Cons ci ratio: 1.010338e-02	ci left: 5.566728e-02	ci right 5.623295e-02	k: 142112	n:2540000
KS ci ratio: 5.343167e-02	ci left: 2.058059e-03	ci right 2.171428e-03	k: 5370	n:2540000
LIN37   2540000 perm   2934 sec   (866 perm/sec)   p_kst 2.114173e-03   p_cons 5.594961e-02   p_joint 4.381890e-04

Joint ci ratio: 1.172639e-01	ci left: 4.123489e-04	ci right 4.640907e-04	k: 1116	n:2550000
Cons ci ratio: 1.008319e-02	ci left: 5.567155e-02	ci right 5.623612e-02	k: 142681	n:2550000
KS ci ratio: 5.332257e-02	ci left: 2.058500e-03	ci right 2.171655e-03	k: 5392	n:2550000
LIN37   2550000 perm   2954 sec   (863 perm/sec)   p_kst 2.114510e-03   p_cons 5.595333e-02   p_joint 4.376471e-04

Joint ci ratio: 1.171591e-01	ci left: 4.114965e-04	ci right 4.630820e-04	k: 1118	n:2560000
Cons ci ratio: 1.006205e-02	ci left: 5.568709e-02	ci right 5.625063e-02	k: 143279	n:2560000
KS ci ratio: 5.325356e-02	ci left: 2.055855e-03	ci right 2.168714e-03	k: 5406	n:2560000
LIN37   2560000 perm   2976 sec   (860 perm/sec)   p_kst 2.111719e-03   p_cons 5.596836e-02   p_joint 4.367187e-04

Joint ci ratio: 1.167424e-01	ci left: 4.129171e-04	ci right 4.644840e-04	k: 1126	n:2570000
Cons ci ratio: 1.004211e-02	ci left: 5.569126e-02	ci right 5.625371e-02	k: 143848	n:2570000
KS ci ratio: 5.314554e-02	ci left: 2.056302e-03	ci right 2.168949e-03	k: 5428	n:2570000
LIN37   2570000 perm   2997 sec   (857 perm/sec)   p_kst 2.112062e-03   p_cons 5.597198e-02   p_joint 4.381323e-04

Joint ci ratio: 1.163815e-01	ci left: 4.139508e-04	ci right 4.654759e-04	k: 1133	n:2580000
Cons ci ratio: 1.002284e-02	ci left: 5.568959e-02	ci right 5.625094e-02	k: 144402	n:2580000
KS ci ratio: 5.304306e-02	ci left: 2.056363e-03	ci right 2.168790e-03	k: 5449	n:2580000
LIN37   2580000 perm   3019 sec   (855 perm/sec)   p_kst 2.112016e-03   p_cons 5.596977e-02   p_joint 4.391473e-04

Joint ci ratio: 1.161768e-01	ci left: 4.138520e-04	ci right 4.652680e-04	k: 1137	n:2590000
Cons ci ratio: 1.000372e-02	ci left: 5.568755e-02	ci right 5.624781e-02	k: 144955	n:2590000
KS ci ratio: 5.292662e-02	ci left: 2.057567e-03	ci right 2.169805e-03	k: 5473	n:2590000
LIN37   2590000 perm   3041 sec   (852 perm/sec)   p_kst 2.113127e-03   p_cons 5.596718e-02   p_joint 4.389961e-04

Joint ci ratio: 1.159732e-01	ci left: 4.137540e-04	ci right 4.650616e-04	k: 1141	n:2600000
Cons ci ratio: 9.983576e-03	ci left: 5.569742e-02	ci right 5.625664e-02	k: 145539	n:2600000
KS ci ratio: 5.283503e-02	ci left: 2.056865e-03	ci right 2.168864e-03	k: 5492	n:2600000
LIN37   2600000 perm   3062 sec   (849 perm/sec)   p_kst 2.112308e-03   p_cons 5.597654e-02   p_joint 4.388462e-04

Joint ci ratio: 1.156697e-01	ci left: 4.144010e-04	ci right 4.656452e-04	k: 1147	n:2610000
Cons ci ratio: 9.963340e-03	ci left: 5.570951e-02	ci right 5.626772e-02	k: 146129	n:2610000
KS ci ratio: 5.272953e-02	ci left: 2.057302e-03	ci right 2.169095e-03	k: 5514	n:2610000
LIN37   2610000 perm   3083 sec   (846 perm/sec)   p_kst 2.112644e-03   p_cons 5.598812e-02   p_joint 4.394636e-04

Joint ci ratio: 1.154186e-01	ci left: 4.146726e-04	ci right 4.658314e-04	k: 1152	n:2620000
Cons ci ratio: 9.944339e-03	ci left: 5.570971e-02	ci right 5.626684e-02	k: 146688	n:2620000
KS ci ratio: 5.264849e-02	ci left: 2.055852e-03	ci right 2.167390e-03	k: 5531	n:2620000
LIN37   2620000 perm   3105 sec   (844 perm/sec)   p_kst 2.111069e-03   p_cons 5.598779e-02   p_joint 4.396947e-04

Joint ci ratio: 1.152688e-01	ci left: 4.142036e-04	ci right 4.652338e-04	k: 1155	n:2630000
Cons ci ratio: 9.925126e-03	ci left: 5.571332e-02	ci right 5.626941e-02	k: 147256	n:2630000
KS ci ratio: 5.255359e-02	ci left: 2.055540e-03	ci right 2.166854e-03	k: 5551	n:2630000
LIN37   2630000 perm   3126 sec   (841 perm/sec)   p_kst 2.110646e-03   p_cons 5.599087e-02   p_joint 4.391635e-04

Joint ci ratio: 1.149213e-01	ci left: 4.152099e-04	ci right 4.661993e-04	k: 1162	n:2640000
Cons ci ratio: 9.907230e-03	ci left: 5.570405e-02	ci right 5.625904e-02	k: 147790	n:2640000
KS ci ratio: 5.247335e-02	ci left: 2.054109e-03	ci right 2.165170e-03	k: 5568	n:2640000
LIN37   2640000 perm   3148 sec   (839 perm/sec)   p_kst 2.109091e-03   p_cons 5.598106e-02   p_joint 4.401515e-04

Joint ci ratio: 1.148226e-01	ci left: 4.143761e-04	ci right 4.652165e-04	k: 1164	n:2650000
Cons ci ratio: 9.888549e-03	ci left: 5.570427e-02	ci right 5.625821e-02	k: 148349	n:2650000
KS ci ratio: 5.240759e-02	ci left: 2.051571e-03	ci right 2.162352e-03	k: 5582	n:2650000
LIN37   2650000 perm   3171 sec   (836 perm/sec)   p_kst 2.106415e-03   p_cons 5.598075e-02   p_joint 4.392453e-04

Joint ci ratio: 1.145770e-01	ci left: 4.146441e-04	ci right 4.654012e-04	k: 1169	n:2660000
Cons ci ratio: 9.871728e-03	ci left: 5.568573e-02	ci right 5.623854e-02	k: 148858	n:2660000
KS ci ratio: 5.231398e-02	ci left: 2.051279e-03	ci right 2.161840e-03	k: 5602	n:2660000
LIN37   2660000 perm   3192 sec   (833 perm/sec)   p_kst 2.106015e-03   p_cons 5.596165e-02   p_joint 4.394737e-04

Joint ci ratio: 1.144304e-01	ci left: 4.141825e-04	ci right 4.648139e-04	k: 1172	n:2670000
Cons ci ratio: 9.853246e-03	ci left: 5.568602e-02	ci right 5.623779e-02	k: 149417	n:2670000
KS ci ratio: 5.222553e-02	ci left: 2.050619e-03	ci right 2.160952e-03	k: 5621	n:2670000
LIN37   2670000 perm   3214 sec   (831 perm/sec)   p_kst 2.105243e-03   p_cons 5.596142e-02   p_joint 4.389513e-04

Joint ci ratio: 1.143818e-01	ci left: 4.129995e-04	ci right 4.634633e-04	k: 1173	n:2680000
Cons ci ratio: 9.834763e-03	ci left: 5.568742e-02	ci right 5.623816e-02	k: 149979	n:2680000
KS ci ratio: 5.210051e-02	ci left: 2.052911e-03	ci right 2.163095e-03	k: 5648	n:2680000
LIN37   2680000 perm   3237 sec   (828 perm/sec)   p_kst 2.107463e-03   p_cons 5.596231e-02   p_joint 4.376866e-04

Joint ci ratio: 1.142845e-01	ci left: 4.121864e-04	ci right 4.625051e-04	k: 1175	n:2690000
Cons ci ratio: 9.816487e-03	ci left: 5.568770e-02	ci right 5.623742e-02	k: 150538	n:2690000
KS ci ratio: 5.202694e-02	ci left: 2.051150e-03	ci right 2.161079e-03	k: 5664	n:2690000
LIN37   2690000 perm   3259 sec   (825 perm/sec)   p_kst 2.105576e-03   p_cons 5.596208e-02   p_joint 4.368030e-04

Joint ci ratio: 1.140423e-01	ci left: 4.124587e-04	ci right 4.626969e-04	k: 1180	n:2700000
Cons ci ratio: 9.797524e-03	ci left: 5.569648e-02	ci right 5.624521e-02	k: 151120	n:2700000
KS ci ratio: 5.195367e-02	ci left: 2.049402e-03	ci right 2.159078e-03	k: 5680	n:2700000
LIN37   2700000 perm   3281 sec   (823 perm/sec)   p_kst 2.103704e-03   p_cons 5.597037e-02   p_joint 4.370370e-04

Joint ci ratio: 1.136579e-01	ci left: 4.138047e-04	ci right 4.640255e-04	k: 1188	n:2710000
Cons ci ratio: 9.780957e-03	ci left: 5.568053e-02	ci right 5.622817e-02	k: 151635	n:2710000
KS ci ratio: 5.186703e-02	ci left: 2.048759e-03	ci right 2.158213e-03	k: 5699	n:2710000
LIN37   2710000 perm   3304 sec   (820 perm/sec)   p_kst 2.102952e-03   p_cons 5.595387e-02   p_joint 4.383764e-04

Joint ci ratio: 1.133722e-01	ci left: 4.144267e-04	ci right 4.645880e-04	k: 1194	n:2720000
Cons ci ratio: 9.763523e-03	ci left: 5.567496e-02	ci right 5.622157e-02	k: 152178	n:2720000
KS ci ratio: 5.179443e-02	ci left: 2.047033e-03	ci right 2.156237e-03	k: 5715	n:2720000
LIN37   2720000 perm   3326 sec   (818 perm/sec)   p_kst 2.101103e-03   p_cons 5.594779e-02   p_joint 4.389706e-04

Joint ci ratio: 1.131829e-01	ci left: 4.143323e-04	ci right 4.643930e-04	k: 1198	n:2730000
Cons ci ratio: 9.744188e-03	ci left: 5.569100e-02	ci right 5.623668e-02	k: 152780	n:2730000
KS ci ratio: 5.169955e-02	ci left: 2.047128e-03	ci right 2.156130e-03	k: 5736	n:2730000
LIN37   2730000 perm   3349 sec   (815 perm/sec)   p_kst 2.101099e-03   p_cons 5.596337e-02   p_joint 4.388278e-04

Joint ci ratio: 1.130887e-01	ci left: 4.135294e-04	ci right 4.634487e-04	k: 1200	n:2740000
Cons ci ratio: 9.725438e-03	ci left: 5.570183e-02	ci right 5.624656e-02	k: 153368	n:2740000
KS ci ratio: 5.160070e-02	ci left: 2.047582e-03	ci right 2.156394e-03	k: 5758	n:2740000
LIN37   2740000 perm   3371 sec   (813 perm/sec)   p_kst 2.101460e-03   p_cons 5.597372e-02   p_joint 4.379562e-04

Joint ci ratio: 1.126673e-01	ci left: 4.152060e-04	ci right 4.651285e-04	k: 1209	n:2750000
Cons ci ratio: 9.708332e-03	ci left: 5.569589e-02	ci right 5.623959e-02	k: 153910	n:2750000
KS ci ratio: 5.145783e-02	ci left: 2.051623e-03	ci right 2.160339e-03	k: 5790	n:2750000
LIN37   2750000 perm   3394 sec   (810 perm/sec)   p_kst 2.105455e-03   p_cons 5.596727e-02   p_joint 4.396364e-04

Joint ci ratio: 1.125743e-01	ci left: 4.144059e-04	ci right 4.641883e-04	k: 1211	n:2760000
Cons ci ratio: 9.691582e-03	ci left: 5.568710e-02	ci right 5.622977e-02	k: 154444	n:2760000
KS ci ratio: 5.137807e-02	ci left: 2.050627e-03	ci right 2.159117e-03	k: 5808	n:2760000
LIN37   2760000 perm   3417 sec   (808 perm/sec)   p_kst 2.104348e-03   p_cons 5.595797e-02   p_joint 4.387681e-04

Joint ci ratio: 1.123428e-01	ci left: 4.146641e-04	ci right 4.643683e-04	k: 1216	n:2770000
Cons ci ratio: 9.673827e-03	ci left: 5.569026e-02	ci right 5.623197e-02	k: 155011	n:2770000
KS ci ratio: 5.128986e-02	ci left: 2.050352e-03	ci right 2.158635e-03	k: 5828	n:2770000
LIN37   2770000 perm   3439 sec   (805 perm/sec)   p_kst 2.103971e-03   p_cons 5.596065e-02   p_joint 4.389892e-04

Joint ci ratio: 1.119753e-01	ci left: 4.159695e-04	ci right 4.656563e-04	k: 1224	n:2780000
Cons ci ratio: 9.656301e-03	ci left: 5.569196e-02	ci right 5.623270e-02	k: 155574	n:2780000
KS ci ratio: 5.116268e-02	ci left: 2.053275e-03	ci right 2.161436e-03	k: 5857	n:2780000
LIN37   2780000 perm   3462 sec   (803 perm/sec)   p_kst 2.106835e-03   p_cons 5.596187e-02   p_joint 4.402878e-04

Joint ci ratio: 1.118385e-01	ci left: 4.155237e-04	ci right 4.650926e-04	k: 1227	n:2790000
Cons ci ratio: 9.639752e-03	ci left: 5.568400e-02	ci right 5.622373e-02	k: 156110	n:2790000
KS ci ratio: 5.106251e-02	ci left: 2.054054e-03	ci right 2.162038e-03	k: 5880	n:2790000
LIN37   2790000 perm   3486 sec   (800 perm/sec)   p_kst 2.107527e-03   p_cons 5.595341e-02   p_joint 4.397849e-04

Joint ci ratio: 1.115210e-01	ci left: 4.164699e-04	ci right 4.660014e-04	k: 1234	n:2800000
Cons ci ratio: 9.622085e-03	ci left: 5.568928e-02	ci right 5.622807e-02	k: 156683	n:2800000
KS ci ratio: 5.096294e-02	ci left: 2.054827e-03	ci right 2.162635e-03	k: 5903	n:2800000
LIN37   2800000 perm   3509 sec   (798 perm/sec)   p_kst 2.108214e-03   p_cons 5.595821e-02   p_joint 4.407143e-04

Joint ci ratio: 1.115211e-01	ci left: 4.149878e-04	ci right 4.643430e-04	k: 1234	n:2810000
Cons ci ratio: 9.604483e-03	ci left: 5.569488e-02	ci right 5.623273e-02	k: 157257	n:2810000
KS ci ratio: 5.087685e-02	ci left: 2.054541e-03	ci right 2.162147e-03	k: 5923	n:2810000
LIN37   2810000 perm   3532 sec   (796 perm/sec)   p_kst 2.107829e-03   p_cons 5.596335e-02   p_joint 4.391459e-04

Joint ci ratio: 1.113409e-01	ci left: 4.148951e-04	ci right 4.641544e-04	k: 1238	n:2820000
Cons ci ratio: 9.589036e-03	ci left: 5.567779e-02	ci right 5.621461e-02	k: 157767	n:2820000
KS ci ratio: 5.078263e-02	ci left: 2.054958e-03	ci right 2.162380e-03	k: 5945	n:2820000
LIN37   2820000 perm   3555 sec   (793 perm/sec)   p_kst 2.108156e-03   p_cons 5.594574e-02   p_joint 4.390071e-04

Joint ci ratio: 1.110277e-01	ci left: 4.158337e-04	ci right 4.650565e-04	k: 1245	n:2830000
Cons ci ratio: 9.572478e-03	ci left: 5.567388e-02	ci right 5.620972e-02	k: 158314	n:2830000
KS ci ratio: 5.066342e-02	ci left: 2.057465e-03	ci right 2.164759e-03	k: 5973	n:2830000
LIN37   2830000 perm   3578 sec   (791 perm/sec)   p_kst 2.110601e-03   p_cons 5.594134e-02   p_joint 4.399293e-04

Joint ci ratio: 1.108056e-01	ci left: 4.160813e-04	ci right 4.652284e-04	k: 1250	n:2840000
Cons ci ratio: 9.556197e-03	ci left: 5.566788e-02	ci right 5.620275e-02	k: 158855	n:2840000
KS ci ratio: 5.056193e-02	ci left: 2.058565e-03	ci right 2.165694e-03	k: 5997	n:2840000
LIN37   2840000 perm   3602 sec   (789 perm/sec)   p_kst 2.111620e-03   p_cons 5.593486e-02   p_joint 4.401408e-04

Joint ci ratio: 1.106730e-01	ci left: 4.156448e-04	ci right 4.646778e-04	k: 1253	n:2850000
Cons ci ratio: 9.540316e-03	ci left: 5.565842e-02	ci right 5.619231e-02	k: 159386	n:2850000
KS ci ratio: 5.046945e-02	ci left: 2.058963e-03	ci right 2.165912e-03	k: 6019	n:2850000
LIN37   2850000 perm   3625 sec   (786 perm/sec)   p_kst 2.111930e-03   p_cons 5.592491e-02   p_joint 4.396491e-04

Joint ci ratio: 1.104969e-01	ci left: 4.155514e-04	ci right 4.644903e-04	k: 1257	n:2860000
Cons ci ratio: 9.524419e-03	ci left: 5.565008e-02	ci right 5.618299e-02	k: 159920	n:2860000
KS ci ratio: 5.034409e-02	ci left: 2.062122e-03	ci right 2.168960e-03	k: 6049	n:2860000
LIN37   2860000 perm   3648 sec   (784 perm/sec)   p_kst 2.115035e-03   p_cons 5.591608e-02   p_joint 4.395105e-04

Joint ci ratio: 1.103654e-01	ci left: 4.151199e-04	ci right 4.639460e-04	k: 1260	n:2870000
Cons ci ratio: 9.506122e-03	ci left: 5.566926e-02	ci right 5.620132e-02	k: 160533	n:2870000
KS ci ratio: 5.025279e-02	ci left: 2.062506e-03	ci right 2.169165e-03	k: 6071	n:2870000
LIN37   2870000 perm   3672 sec   (782 perm/sec)   p_kst 2.115331e-03   p_cons 5.593484e-02   p_joint 4.390244e-04

Joint ci ratio: 1.101908e-01	ci left: 4.150291e-04	ci right 4.637623e-04	k: 1264	n:2880000
Cons ci ratio: 9.490489e-03	ci left: 5.565990e-02	ci right 5.619099e-02	k: 161064	n:2880000
KS ci ratio: 5.018263e-02	ci left: 2.061173e-03	ci right 2.167610e-03	k: 6088	n:2880000
LIN37   2880000 perm   3696 sec   (779 perm/sec)   p_kst 2.113889e-03   p_cons 5.592500e-02   p_joint 4.388889e-04

Joint ci ratio: 1.101473e-01	ci left: 4.139295e-04	ci right 4.625131e-04	k: 1265	n:2890000
Cons ci ratio: 9.473908e-03	ci left: 5.566200e-02	ci right 5.619218e-02	k: 161628	n:2890000
KS ci ratio: 5.010865e-02	ci left: 2.060191e-03	ci right 2.166416e-03	k: 6106	n:2890000
LIN37   2890000 perm   3720 sec   (777 perm/sec)   p_kst 2.112803e-03   p_cons 5.592664e-02   p_joint 4.377163e-04

Joint ci ratio: 1.099737e-01	ci left: 4.138435e-04	ci right 4.623355e-04	k: 1269	n:2900000
Cons ci ratio: 9.457537e-03	ci left: 5.566271e-02	ci right 5.619197e-02	k: 162188	n:2900000
KS ci ratio: 5.001045e-02	ci left: 2.061259e-03	ci right 2.167325e-03	k: 6130	n:2900000
LIN37   2900000 perm   3744 sec   (775 perm/sec)   p_kst 2.113793e-03   p_cons 5.592690e-02   p_joint 4.375862e-04

Joint ci ratio: 1.098441e-01	ci left: 4.134239e-04	ci right 4.618060e-04	k: 1272	n:2910000
Cons ci ratio: 9.439684e-03	ci left: 5.568090e-02	ci right 5.620933e-02	k: 162799	n:2910000
KS ci ratio: 4.992502e-02	ci left: 2.061302e-03	ci right 2.167184e-03	k: 6151	n:2910000
LIN37   2910000 perm   3767 sec   (772 perm/sec)   p_kst 2.113746e-03   p_cons 5.594467e-02   p_joint 4.371134e-04

Joint ci ratio: 1.096719e-01	ci left: 4.133404e-04	ci right 4.616319e-04	k: 1276	n:2920000
Cons ci ratio: 9.423367e-03	ci left: 5.568291e-02	ci right 5.621044e-02	k: 163363	n:2920000
KS ci ratio: 4.986432e-02	ci left: 2.059316e-03	ci right 2.164963e-03	k: 6166	n:2920000
LIN37   2920000 perm   3791 sec   (770 perm/sec)   p_kst 2.111644e-03   p_cons 5.594623e-02   p_joint 4.369863e-04

Joint ci ratio: 1.095434e-01	ci left: 4.129255e-04	ci right 4.611084e-04	k: 1279	n:2930000
Cons ci ratio: 9.408290e-03	ci left: 5.567196e-02	ci right 5.619854e-02	k: 163889	n:2930000
KS ci ratio: 4.975950e-02	ci left: 2.061051e-03	ci right 2.166558e-03	k: 6192	n:2930000
LIN37   2930000 perm   3815 sec   (768 perm/sec)   p_kst 2.113311e-03   p_cons 5.593481e-02   p_joint 4.365188e-04

Joint ci ratio: 1.093726e-01	ci left: 4.128442e-04	ci right 4.609377e-04	k: 1283	n:2940000
Cons ci ratio: 9.392982e-03	ci left: 5.566448e-02	ci right 5.619013e-02	k: 164425	n:2940000
KS ci ratio: 4.964333e-02	ci left: 2.063782e-03	ci right 2.169176e-03	k: 6221	n:2940000
LIN37   2940000 perm   3839 sec   (766 perm/sec)   p_kst 2.115986e-03   p_cons 5.592687e-02   p_joint 4.363946e-04

Joint ci ratio: 1.092876e-01	ci left: 4.121042e-04	ci right 4.600717e-04	k: 1285	n:2950000
Cons ci ratio: 9.377418e-03	ci left: 5.566078e-02	ci right 5.618552e-02	k: 164972	n:2950000
KS ci ratio: 4.955182e-02	ci left: 2.064486e-03	ci right 2.169716e-03	k: 6244	n:2950000
LIN37   2950000 perm   3863 sec   (764 perm/sec)   p_kst 2.116610e-03   p_cons 5.592271e-02   p_joint 4.355932e-04

Joint ci ratio: 1.091604e-01	ci left: 4.116978e-04	ci right 4.595586e-04	k: 1288	n:2960000
Cons ci ratio: 9.362050e-03	ci left: 5.565575e-02	ci right 5.617958e-02	k: 165515	n:2960000
KS ci ratio: 4.947267e-02	ci left: 2.064184e-03	ci right 2.169226e-03	k: 6264	n:2960000
LIN37   2960000 perm   3887 sec   (761 perm/sec)   p_kst 2.116216e-03   p_cons 5.591723e-02   p_joint 4.351351e-04

Joint ci ratio: 1.089492e-01	ci left: 4.119492e-04	ci right 4.597407e-04	k: 1293	n:2970000
Cons ci ratio: 9.346400e-03	ci left: 5.565479e-02	ci right 5.617773e-02	k: 166070	n:2970000
KS ci ratio: 4.938997e-02	ci left: 2.064217e-03	ci right 2.169080e-03	k: 6285	n:2970000
LIN37   2970000 perm   3912 sec   (759 perm/sec)   p_kst 2.116162e-03   p_cons 5.591582e-02   p_joint 4.353535e-04

Joint ci ratio: 1.088232e-01	ci left: 4.115461e-04	ci right 4.592321e-04	k: 1296	n:2980000
Cons ci ratio: 9.330681e-03	ci left: 5.565551e-02	ci right 5.617757e-02	k: 166630	n:2980000
KS ci ratio: 4.931551e-02	ci left: 2.063588e-03	ci right 2.168256e-03	k: 6304	n:2980000
LIN37   2980000 perm   3936 sec   (757 perm/sec)   p_kst 2.115436e-03   p_cons 5.591611e-02   p_joint 4.348993e-04

Joint ci ratio: 1.086976e-01	ci left: 4.111457e-04	ci right 4.587268e-04	k: 1299	n:2990000
Cons ci ratio: 9.315128e-03	ci left: 5.565522e-02	ci right 5.617641e-02	k: 167187	n:2990000
KS ci ratio: 4.924919e-02	ci left: 2.062302e-03	ci right 2.166760e-03	k: 6321	n:2990000
LIN37   2990000 perm   3960 sec   (755 perm/sec)   p_kst 2.114047e-03   p_cons 5.591538e-02   p_joint 4.344482e-04

Joint ci ratio: 1.086559e-01	ci left: 4.100995e-04	ci right 4.575401e-04	k: 1300	n:3000000
Cons ci ratio: 9.299830e-03	ci left: 5.565294e-02	ci right 5.617325e-02	k: 167738	n:3000000
KS ci ratio: 4.916760e-02	ci left: 2.062341e-03	ci right 2.166624e-03	k: 6342	n:3000000
LIN37   3000000 perm   3985 sec   (753 perm/sec)   p_kst 2.114000e-03   p_cons 5.591267e-02   p_joint 4.333333e-04

Joint ci ratio: 1.084061e-01	ci left: 4.106763e-04	ci right 4.580675e-04	k: 1306	n:3010000
Cons ci ratio: 9.284285e-03	ci left: 5.565433e-02	ci right 5.617377e-02	k: 168300	n:3010000
KS ci ratio: 4.908255e-02	ci left: 2.062709e-03	ci right 2.166824e-03	k: 6364	n:3010000
LIN37   3010000 perm   4009 sec   (751 perm/sec)   p_kst 2.114286e-03   p_cons 5.591362e-02   p_joint 4.338870e-04

Joint ci ratio: 1.081170e-01	ci left: 4.115716e-04	ci right 4.589313e-04	k: 1313	n:3020000
Cons ci ratio: 9.268905e-03	ci left: 5.565471e-02	ci right 5.617329e-02	k: 168859	n:3020000
KS ci ratio: 4.899794e-02	ci left: 2.063074e-03	ci right 2.167023e-03	k: 6386	n:3020000
LIN37   3020000 perm   4034 sec   (749 perm/sec)   p_kst 2.114570e-03   p_cons 5.591358e-02   p_joint 4.347682e-04

Joint ci ratio: 1.078709e-01	ci left: 4.121400e-04	ci right 4.594504e-04	k: 1319	n:3030000
Cons ci ratio: 9.253311e-03	ci left: 5.565839e-02	ci right 5.617613e-02	k: 169428	n:3030000
KS ci ratio: 4.893289e-02	ci left: 2.061807e-03	ci right 2.165551e-03	k: 6403	n:3030000
LIN37   3030000 perm   4059 sec   (747 perm/sec)   p_kst 2.113201e-03   p_cons 5.591683e-02   p_joint 4.353135e-04

Joint ci ratio: 1.076672e-01	ci left: 4.123846e-04	ci right 4.596281e-04	k: 1324	n:3040000
Cons ci ratio: 9.237854e-03	ci left: 5.566138e-02	ci right 5.617828e-02	k: 169995	n:3040000
KS ci ratio: 4.885286e-02	ci left: 2.061848e-03	ci right 2.165420e-03	k: 6424	n:3040000
LIN37   3040000 perm   4084 sec   (744 perm/sec)   p_kst 2.113158e-03   p_cons 5.591941e-02   p_joint 4.355263e-04

Joint ci ratio: 1.074242e-01	ci left: 4.129469e-04	ci right 4.601412e-04	k: 1330	n:3050000
Cons ci ratio: 9.222961e-03	ci left: 5.565880e-02	ci right 5.617483e-02	k: 170545	n:3050000
KS ci ratio: 4.877701e-02	ci left: 2.061565e-03	ci right 2.164957e-03	k: 6444	n:3050000
LIN37   3050000 perm   4108 sec   (742 perm/sec)   p_kst 2.112787e-03   p_cons 5.591639e-02   p_joint 4.360656e-04

Joint ci ratio: 1.071829e-01	ci left: 4.135055e-04	ci right 4.606508e-04	k: 1336	n:3060000
Cons ci ratio: 9.207884e-03	ci left: 5.565917e-02	ci right 5.617436e-02	k: 171104	n:3060000
KS ci ratio: 4.869397e-02	ci left: 2.061930e-03	ci right 2.165159e-03	k: 6466	n:3060000
LIN37   3060000 perm   4134 sec   (740 perm/sec)   p_kst 2.113072e-03   p_cons 5.591634e-02   p_joint 4.366013e-04

Joint ci ratio: 1.069830e-01	ci left: 4.137437e-04	ci right 4.608226e-04	k: 1341	n:3070000
Cons ci ratio: 9.193192e-03	ci left: 5.565596e-02	ci right 5.617029e-02	k: 171652	n:3070000
KS ci ratio: 4.861510e-02	ci left: 2.061971e-03	ci right 2.165030e-03	k: 6487	n:3070000
LIN37   3070000 perm   4159 sec   (738 perm/sec)   p_kst 2.113029e-03   p_cons 5.591270e-02   p_joint 4.368078e-04

Joint ci ratio: 1.068239e-01	ci left: 4.136643e-04	ci right 4.606598e-04	k: 1345	n:3080000
Cons ci ratio: 9.179275e-03	ci left: 5.564467e-02	ci right 5.615812e-02	k: 172175	n:3080000
KS ci ratio: 4.854409e-02	ci left: 2.061370e-03	ci right 2.164245e-03	k: 6506	n:3080000
LIN37   3080000 perm   4184 sec   (736 perm/sec)   p_kst 2.112338e-03   p_cons 5.590097e-02   p_joint 4.366883e-04

Joint ci ratio: 1.066261e-01	ci left: 4.139005e-04	ci right 4.608303e-04	k: 1350	n:3090000
Cons ci ratio: 9.164860e-03	ci left: 5.563991e-02	ci right 5.615251e-02	k: 172718	n:3090000
KS ci ratio: 4.845107e-02	ci left: 2.062692e-03	ci right 2.165429e-03	k: 6531	n:3090000
LIN37   3090000 perm   4209 sec   (734 perm/sec)   p_kst 2.113592e-03   p_cons 5.589579e-02   p_joint 4.368932e-04

Joint ci ratio: 1.065473e-01	ci left: 4.131933e-04	ci right 4.600061e-04	k: 1352	n:3100000
Cons ci ratio: 9.149254e-03	ci left: 5.564967e-02	ci right 5.616148e-02	k: 173306	n:3100000
KS ci ratio: 4.838818e-02	ci left: 2.061455e-03	ci right 2.163995e-03	k: 6548	n:3100000
LIN37   3100000 perm   4234 sec   (732 perm/sec)   p_kst 2.112258e-03   p_cons 5.590516e-02   p_joint 4.361290e-04

Joint ci ratio: 1.061946e-01	ci left: 4.146816e-04	ci right 4.614979e-04	k: 1361	n:3110000
Cons ci ratio: 9.133867e-03	ci left: 5.565777e-02	ci right 5.616878e-02	k: 173889	n:3110000
KS ci ratio: 4.831079e-02	ci left: 2.061498e-03	ci right 2.163870e-03	k: 6569	n:3110000
LIN37   3110000 perm   4259 sec   (730 perm/sec)   p_kst 2.112219e-03   p_cons 5.591286e-02   p_joint 4.376206e-04

Joint ci ratio: 1.060390e-01	ci left: 4.146006e-04	ci right 4.613348e-04	k: 1365	n:3120000
Cons ci ratio: 9.119775e-03	ci left: 5.565174e-02	ci right 5.616191e-02	k: 174428	n:3120000
KS ci ratio: 4.823376e-02	ci left: 2.061540e-03	ci right 2.163747e-03	k: 6590	n:3120000
LIN37   3120000 perm   4285 sec   (728 perm/sec)   p_kst 2.112179e-03   p_cons 5.590641e-02   p_joint 4.375000e-04

Joint ci ratio: 1.058841e-01	ci left: 4.145200e-04	ci right 4.611727e-04	k: 1369	n:3130000
Cons ci ratio: 9.104783e-03	ci left: 5.565691e-02	ci right 5.616628e-02	k: 175002	n:3130000
KS ci ratio: 4.816806e-02	ci left: 2.060635e-03	ci right 2.162654e-03	k: 6608	n:3130000
LIN37   3130000 perm   4311 sec   (726 perm/sec)   p_kst 2.111182e-03   p_cons 5.591118e-02   p_joint 4.373802e-04

Joint ci ratio: 1.057298e-01	ci left: 4.144401e-04	ci right 4.610115e-04	k: 1373	n:3140000
Cons ci ratio: 9.091154e-03	ci left: 5.564711e-02	ci right 5.615562e-02	k: 175529	n:3140000
KS ci ratio: 4.805178e-02	ci left: 2.064141e-03	ci right 2.166080e-03	k: 6640	n:3140000
LIN37   3140000 perm   4336 sec   (724 perm/sec)   p_kst 2.114650e-03   p_cons 5.590096e-02   p_joint 4.372611e-04

Joint ci ratio: 1.056146e-01	ci left: 4.140516e-04	ci right 4.605256e-04	k: 1376	n:3150000
Cons ci ratio: 9.076522e-03	ci left: 5.564972e-02	ci right 5.615744e-02	k: 176095	n:3150000
KS ci ratio: 4.797599e-02	ci left: 2.064175e-03	ci right 2.165950e-03	k: 6661	n:3150000
LIN37   3150000 perm   4362 sec   (722 perm/sec)   p_kst 2.114603e-03   p_cons 5.590317e-02   p_joint 4.368254e-04

Joint ci ratio: 1.055764e-01	ci left: 4.130494e-04	ci right 4.593930e-04	k: 1377	n:3160000
Cons ci ratio: 9.061308e-03	ci left: 5.565990e-02	ci right 5.616686e-02	k: 176685	n:3160000
KS ci ratio: 4.790415e-02	ci left: 2.063896e-03	ci right 2.165501e-03	k: 6681	n:3160000
LIN37   3160000 perm   4388 sec   (720 perm/sec)   p_kst 2.114241e-03   p_cons 5.591297e-02   p_joint 4.357595e-04

Joint ci ratio: 1.054235e-01	ci left: 4.129749e-04	ci right 4.592390e-04	k: 1381	n:3170000
Cons ci ratio: 9.046602e-03	ci left: 5.566499e-02	ci right 5.617116e-02	k: 177259	n:3170000
KS ci ratio: 4.786126e-02	ci left: 2.061125e-03	ci right 2.162501e-03	k: 6693	n:3170000
LIN37   3170000 perm   4414 sec   (718 perm/sec)   p_kst 2.111356e-03   p_cons 5.591767e-02   p_joint 4.356467e-04

Joint ci ratio: 1.052333e-01	ci left: 4.132072e-04	ci right 4.594085e-04	k: 1386	n:3180000
Cons ci ratio: 9.031968e-03	ci left: 5.567003e-02	ci right 5.617543e-02	k: 177833	n:3180000
KS ci ratio: 4.780063e-02	ci left: 2.059925e-03	ci right 2.161110e-03	k: 6710	n:3180000
LIN37   3180000 perm   4440 sec   (716 perm/sec)   p_kst 2.110063e-03   p_cons 5.592233e-02   p_joint 4.358491e-04

Joint ci ratio: 1.048934e-01	ci left: 4.146591e-04	ci right 4.608638e-04	k: 1395	n:3190000
Cons ci ratio: 9.018128e-03	ci left: 5.566661e-02	ci right 5.617119e-02	k: 178380	n:3190000
KS ci ratio: 4.772247e-02	ci left: 2.060282e-03	ci right 2.161315e-03	k: 6732	n:3190000
LIN37   3190000 perm   4466 sec   (714 perm/sec)   p_kst 2.110345e-03   p_cons 5.591850e-02   p_joint 4.373041e-04

Joint ci ratio: 1.047061e-01	ci left: 4.148848e-04	ci right 4.610270e-04	k: 1400	n:3200000
Cons ci ratio: 9.004431e-03	ci left: 5.566226e-02	ci right 5.616604e-02	k: 178924	n:3200000
KS ci ratio: 4.764822e-02	ci left: 2.060328e-03	ci right 2.161201e-03	k: 6753	n:3200000
LIN37   3200000 perm   4492 sec   (712 perm/sec)   p_kst 2.110313e-03   p_cons 5.591375e-02   p_joint 4.375000e-04

Joint ci ratio: 1.045197e-01	ci left: 4.151092e-04	ci right 4.611892e-04	k: 1405	n:3210000
Cons ci ratio: 8.989841e-03	ci left: 5.566914e-02	ci right 5.617216e-02	k: 179504	n:3210000
KS ci ratio: 4.758135e-02	ci left: 2.059758e-03	ci right 2.160458e-03	k: 6772	n:3210000
LIN37   3210000 perm   4518 sec   (711 perm/sec)   p_kst 2.109657e-03   p_cons 5.592025e-02   p_joint 4.376947e-04

Joint ci ratio: 1.042605e-01	ci left: 4.159372e-04	ci right 4.619875e-04	k: 1412	n:3220000
Cons ci ratio: 8.976378e-03	ci left: 5.566358e-02	ci right 5.616579e-02	k: 180044	n:3220000
KS ci ratio: 4.747626e-02	ci left: 2.062568e-03	ci right 2.163176e-03	k: 6802	n:3220000
LIN37   3220000 perm   4544 sec   (709 perm/sec)   p_kst 2.112422e-03   p_cons 5.591429e-02   p_joint 4.385093e-04

Joint ci ratio: 1.040765e-01	ci left: 4.161571e-04	ci right 4.621455e-04	k: 1417	n:3230000
Cons ci ratio: 8.962843e-03	ci left: 5.565960e-02	ci right 5.616101e-02	k: 180589	n:3230000
KS ci ratio: 4.740315e-02	ci left: 2.062606e-03	ci right 2.163057e-03	k: 6823	n:3230000
LIN37   3230000 perm   4569 sec   (707 perm/sec)   p_kst 2.112384e-03   p_cons 5.590991e-02   p_joint 4.386997e-04

Joint ci ratio: 1.038205e-01	ci left: 4.169770e-04	ci right 4.629358e-04	k: 1424	n:3240000
Cons ci ratio: 8.949527e-03	ci left: 5.565379e-02	ci right 5.615441e-02	k: 181128	n:3240000
KS ci ratio: 4.732692e-02	ci left: 2.062950e-03	ci right 2.163252e-03	k: 6845	n:3240000
LIN37   3240000 perm   4595 sec   (705 perm/sec)   p_kst 2.112654e-03   p_cons 5.590370e-02   p_joint 4.395062e-04

Joint ci ratio: 1.037477e-01	ci left: 4.162934e-04	ci right 4.621427e-04	k: 1426	n:3250000
Cons ci ratio: 8.935306e-03	ci left: 5.565939e-02	ci right 5.615925e-02	k: 181704	n:3250000
KS ci ratio: 4.726140e-02	ci left: 2.062379e-03	ci right 2.162511e-03	k: 6864	n:3250000
LIN37   3250000 perm   4621 sec   (703 perm/sec)   p_kst 2.112000e-03   p_cons 5.590892e-02   p_joint 4.387692e-04

Joint ci ratio: 1.036389e-01	ci left: 4.159128e-04	ci right 4.616692e-04	k: 1429	n:3260000
Cons ci ratio: 8.920946e-03	ci left: 5.566740e-02	ci right 5.616652e-02	k: 182288	n:3260000
KS ci ratio: 4.717212e-02	ci left: 2.063934e-03	ci right 2.163947e-03	k: 6890	n:3260000
LIN37   3260000 perm   4647 sec   (701 perm/sec)   p_kst 2.113497e-03   p_cons 5.591656e-02   p_joint 4.383436e-04

Joint ci ratio: 1.036027e-01	ci left: 4.149388e-04	ci right 4.605711e-04	k: 1430	n:3270000
Cons ci ratio: 8.907505e-03	ci left: 5.566528e-02	ci right 5.616364e-02	k: 182839	n:3270000
KS ci ratio: 4.710041e-02	ci left: 2.063969e-03	ci right 2.163827e-03	k: 6911	n:3270000
LIN37   3270000 perm   4674 sec   (700 perm/sec)   p_kst 2.113456e-03   p_cons 5.591407e-02   p_joint 4.373089e-04

Joint ci ratio: 1.033143e-01	ci left: 4.160497e-04	ci right 4.616691e-04	k: 1438	n:3280000
Cons ci ratio: 8.894408e-03	ci left: 5.565984e-02	ci right 5.615741e-02	k: 183379	n:3280000
KS ci ratio: 4.701543e-02	ci left: 2.065209e-03	ci right 2.164942e-03	k: 6936	n:3280000
LIN37   3280000 perm   4700 sec   (698 perm/sec)   p_kst 2.114634e-03   p_cons 5.590823e-02   p_joint 4.384146e-04

Joint ci ratio: 1.031352e-01	ci left: 4.162656e-04	ci right 4.618248e-04	k: 1443	n:3290000
Cons ci ratio: 8.881011e-03	ci left: 5.565868e-02	ci right 5.615548e-02	k: 183933	n:3290000
KS ci ratio: 4.691741e-02	ci left: 2.067643e-03	ci right 2.167279e-03	k: 6965	n:3290000
LIN37   3290000 perm   4727 sec   (696 perm/sec)   p_kst 2.117021e-03   p_cons 5.590669e-02   p_joint 4.386018e-04

Joint ci ratio: 1.029571e-01	ci left: 4.164803e-04	ci right 4.619795e-04	k: 1448	n:3300000
Cons ci ratio: 8.867012e-03	ci left: 5.566538e-02	ci right 5.616146e-02	k: 184513	n:3300000
KS ci ratio: 4.680324e-02	ci left: 2.071560e-03	ci right 2.171136e-03	k: 6999	n:3300000
LIN37   3300000 perm   4754 sec   (694 perm/sec)   p_kst 2.120909e-03   p_cons 5.591303e-02   p_joint 4.387879e-04

Joint ci ratio: 1.027799e-01	ci left: 4.166938e-04	ci right 4.621332e-04	k: 1453	n:3310000
Cons ci ratio: 8.853636e-03	ci left: 5.566541e-02	ci right 5.616074e-02	k: 185071	n:3310000
KS ci ratio: 4.674654e-02	ci left: 2.070377e-03	ci right 2.169772e-03	k: 7016	n:3310000
LIN37   3310000 perm   4782 sec   (692 perm/sec)   p_kst 2.119637e-03   p_cons 5.591269e-02   p_joint 4.389728e-04

Joint ci ratio: 1.026389e-01	ci left: 4.166125e-04	ci right 4.619770e-04	k: 1457	n:3320000
Cons ci ratio: 8.840548e-03	ci left: 5.566274e-02	ci right 5.615731e-02	k: 185620	n:3320000
KS ci ratio: 4.669337e-02	ci left: 2.068904e-03	ci right 2.168112e-03	k: 7032	n:3320000
LIN37   3320000 perm   4809 sec   (690 perm/sec)   p_kst 2.118072e-03   p_cons 5.590964e-02   p_joint 4.388554e-04

Joint ci ratio: 1.024283e-01	ci left: 4.171171e-04	ci right 4.624377e-04	k: 1463	n:3330000
Cons ci ratio: 8.827140e-03	ci left: 5.566458e-02	ci right 5.615841e-02	k: 186184	n:3330000
KS ci ratio: 4.659734e-02	ci left: 2.071298e-03	ci right 2.170412e-03	k: 7061	n:3330000
LIN37   3330000 perm   4836 sec   (689 perm/sec)   p_kst 2.120420e-03   p_cons 5.591111e-02   p_joint 4.393393e-04

Joint ci ratio: 1.023235e-01	ci left: 4.167434e-04	ci right 4.619743e-04	k: 1466	n:3340000
Cons ci ratio: 8.813994e-03	ci left: 5.566402e-02	ci right 5.615711e-02	k: 186740	n:3340000
KS ci ratio: 4.653480e-02	ci left: 2.070719e-03	ci right 2.169668e-03	k: 7080	n:3340000
LIN37   3340000 perm   4863 sec   (687 perm/sec)   p_kst 2.119760e-03   p_cons 5.591018e-02   p_joint 4.389222e-04

Joint ci ratio: 1.022539e-01	ci left: 4.160811e-04	ci right 4.612076e-04	k: 1468	n:3350000
Cons ci ratio: 8.800633e-03	ci left: 5.566674e-02	ci right 5.615910e-02	k: 187307	n:3350000
KS ci ratio: 4.649548e-02	ci left: 2.068078e-03	ci right 2.166816e-03	k: 7092	n:3350000
LIN37   3350000 perm   4891 sec   (685 perm/sec)   p_kst 2.117015e-03   p_cons 5.591254e-02   p_joint 4.382090e-04

Joint ci ratio: 1.020803e-01	ci left: 4.162929e-04	ci right 4.613611e-04	k: 1473	n:3360000
Cons ci ratio: 8.786093e-03	ci left: 5.568430e-02	ci right 5.617599e-02	k: 187924	n:3360000
KS ci ratio: 4.641700e-02	ci left: 2.068983e-03	ci right 2.167592e-03	k: 7116	n:3360000
LIN37   3360000 perm   4918 sec   (683 perm/sec)   p_kst 2.117857e-03   p_cons 5.592976e-02   p_joint 4.383929e-04

Joint ci ratio: 1.017700e-01	ci left: 4.176601e-04	ci right 4.627307e-04	k: 1482	n:3370000
Cons ci ratio: 8.774214e-03	ci left: 5.567066e-02	ci right 5.616156e-02	k: 188436	n:3370000
KS ci ratio: 4.634217e-02	ci left: 2.069589e-03	ci right 2.168065e-03	k: 7139	n:3370000
LIN37   3370000 perm   4945 sec   (681 perm/sec)   p_kst 2.118398e-03   p_cons 5.591573e-02   p_joint 4.397626e-04

Joint ci ratio: 1.017015e-01	ci left: 4.170011e-04	ci right 4.619684e-04	k: 1484	n:3380000
Cons ci ratio: 8.761033e-03	ci left: 5.567333e-02	ci right 5.616352e-02	k: 189003	n:3380000
KS ci ratio: 4.626769e-02	ci left: 2.070192e-03	ci right 2.168534e-03	k: 7162	n:3380000
LIN37   3380000 perm   4973 sec   (680 perm/sec)   p_kst 2.118935e-03   p_cons 5.591805e-02   p_joint 4.390533e-04

Joint ci ratio: 1.016331e-01	ci left: 4.163460e-04	ci right 4.612107e-04	k: 1486	n:3390000
Cons ci ratio: 8.748057e-03	ci left: 5.567423e-02	ci right 5.616370e-02	k: 189564	n:3390000
KS ci ratio: 4.623228e-02	ci left: 2.067293e-03	ci right 2.165419e-03	k: 7173	n:3390000
LIN37   3390000 perm   5000 sec   (678 perm/sec)   p_kst 2.115929e-03   p_cons 5.591858e-02   p_joint 4.383481e-04

Joint ci ratio: 1.013947e-01	ci left: 4.171280e-04	ci right 4.619652e-04	k: 1493	n:3400000
Cons ci ratio: 8.735187e-03	ci left: 5.567453e-02	ci right 5.616328e-02	k: 190123	n:3400000
KS ci ratio: 4.616155e-02	ci left: 2.067608e-03	ci right 2.165596e-03	k: 7195	n:3400000
LIN37   3400000 perm   5028 sec   (676 perm/sec)   p_kst 2.116176e-03   p_cons 5.591853e-02   p_joint 4.391176e-04

Joint ci ratio: 1.012254e-01	ci left: 4.173339e-04	ci right 4.621139e-04	k: 1498	n:3410000
Cons ci ratio: 8.722011e-03	ci left: 5.567923e-02	ci right 5.616727e-02	k: 190697	n:3410000
KS ci ratio: 4.609434e-02	ci left: 2.067632e-03	ci right 2.165474e-03	k: 7216	n:3410000
LIN37   3410000 perm   5056 sec   (674 perm/sec)   p_kst 2.116129e-03   p_cons 5.592287e-02   p_joint 4.392962e-04

Joint ci ratio: 1.010907e-01	ci left: 4.172536e-04	ci right 4.619619e-04	k: 1502	n:3420000
Cons ci ratio: 8.709328e-03	ci left: 5.567864e-02	ci right 5.616597e-02	k: 191253	n:3420000
KS ci ratio: 4.603380e-02	ci left: 2.067078e-03	ci right 2.164762e-03	k: 7235	n:3420000
LIN37   3420000 perm   5084 sec   (673 perm/sec)   p_kst 2.115497e-03   p_cons 5.592193e-02   p_joint 4.391813e-04

Joint ci ratio: 1.009899e-01	ci left: 4.168896e-04	ci right 4.615118e-04	k: 1505	n:3430000
Cons ci ratio: 8.696220e-03	ci left: 5.568388e-02	ci right 5.617052e-02	k: 191829	n:3430000
KS ci ratio: 4.597032e-02	ci left: 2.066816e-03	ci right 2.164349e-03	k: 7255	n:3430000
LIN37   3430000 perm   5112 sec   (671 perm/sec)   p_kst 2.115160e-03   p_cons 5.592682e-02   p_joint 4.387755e-04

Joint ci ratio: 1.008227e-01	ci left: 4.170946e-04	ci right 4.616603e-04	k: 1510	n:3440000
Cons ci ratio: 8.682334e-03	ci left: 5.569924e-02	ci right 5.618523e-02	k: 192440	n:3440000
KS ci ratio: 4.593558e-02	ci left: 2.063968e-03	ci right 2.161292e-03	k: 7266	n:3440000
LIN37   3440000 perm   5140 sec   (669 perm/sec)   p_kst 2.112209e-03   p_cons 5.594186e-02   p_joint 4.389535e-04

Joint ci ratio: 1.006895e-01	ci left: 4.170158e-04	ci right 4.615108e-04	k: 1514	n:3450000
Cons ci ratio: 8.669824e-03	ci left: 5.569860e-02	ci right 5.618388e-02	k: 192996	n:3450000
KS ci ratio: 4.586620e-02	ci left: 2.064289e-03	ci right 2.161477e-03	k: 7288	n:3450000
LIN37   3450000 perm   5168 sec   (668 perm/sec)   p_kst 2.112464e-03   p_cons 5.594087e-02   p_joint 4.388406e-04

Joint ci ratio: 1.006564e-01	ci left: 4.160923e-04	ci right 4.604733e-04	k: 1515	n:3460000
Cons ci ratio: 8.658765e-03	ci left: 5.568095e-02	ci right 5.616546e-02	k: 193493	n:3460000
KS ci ratio: 4.581912e-02	ci left: 2.062609e-03	ci right 2.159615e-03	k: 7303	n:3460000
LIN37   3460000 perm   5196 sec   (666 perm/sec)   p_kst 2.110694e-03   p_cons 5.592283e-02   p_joint 4.378613e-04

Joint ci ratio: 1.003588e-01	ci left: 4.174217e-04	ci right 4.618051e-04	k: 1524	n:3470000
Cons ci ratio: 8.645954e-03	ci left: 5.568526e-02	ci right 5.616908e-02	k: 194066	n:3470000
KS ci ratio: 4.573150e-02	ci left: 2.064641e-03	ci right 2.161553e-03	k: 7331	n:3470000
LIN37   3470000 perm   5224 sec   (664 perm/sec)   p_kst 2.112680e-03   p_cons 5.592680e-02   p_joint 4.391931e-04

Joint ci ratio: 1.002931e-01	ci left: 4.167825e-04	ci right 4.610672e-04	k: 1526	n:3480000
Cons ci ratio: 8.634187e-03	ci left: 5.567750e-02	ci right 5.616059e-02	k: 194597	n:3480000
KS ci ratio: 4.566304e-02	ci left: 2.064958e-03	ci right 2.161735e-03	k: 7353	n:3480000
LIN37   3480000 perm   5252 sec   (663 perm/sec)   p_kst 2.112931e-03   p_cons 5.591868e-02   p_joint 4.385057e-04

Joint ci ratio: 1.002604e-01	ci left: 4.158676e-04	ci right 4.600398e-04	k: 1527	n:3490000
Cons ci ratio: 8.621532e-03	ci left: 5.568123e-02	ci right 5.616364e-02	k: 195168	n:3490000
KS ci ratio: 4.561348e-02	ci left: 2.063574e-03	ci right 2.160178e-03	k: 7369	n:3490000
LIN37   3490000 perm   5280 sec   (661 perm/sec)   p_kst 2.111461e-03   p_cons 5.592206e-02   p_joint 4.375358e-04

Joint ci ratio: 9.996632e-02	ci left: 4.171864e-04	ci right 4.613612e-04	k: 1536	n:3500000
Cons ci ratio: 8.609562e-03	ci left: 5.567723e-02	ci right 5.615893e-02	k: 195712	n:3500000
KS ci ratio: 4.553320e-02	ci left: 2.065022e-03	ci right 2.161519e-03	k: 7395	n:3500000
LIN37   3500000 perm   5308 sec   (659 perm/sec)   p_kst 2.112857e-03   p_cons 5.591771e-02   p_joint 4.388571e-04

Outputting figure to mutsig2_images.part000000000097/LIN37.3_777_3500000_0.0021129_0.055918_0.00043886.png
                gene_name: LIN37
               theta_stop: 0.100 
                    nperm: 3500000 
                     p_ks: 0.0021 
        ci_ks_bounds_left: 0.0021 
       ci_ks_bounds_right: 0.0022 
                   p_cons: 0.056 
      ci_cons_bounds_left: 0.056 
     ci_cons_bounds_right: 0.056 
                  p_joint: 0.00044 
     ci_joint_bounds_left: 0.00042 
    ci_joint_bounds_right: 0.00046 

Current progress: 40 percent done.
LIN9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.197598e-02	ci left: 1.784159e-01	ci right 1.937674e-01	k: 1860	n:10000
Cons ci ratio: 1.432748e-02	ci left: 8.757201e-01	ci right 8.884564e-01	k: 8822	n:10000
KS ci ratio: 1.122450e-01	ci left: 1.025665e-01	ci right 1.148625e-01	k: 1086	n:10000
LIN9   10000 perm   2 sec   (6125 perm/sec)   p_kst 1.086000e-01   p_cons 8.822000e-01   p_joint 1.860000e-01

Joint ci ratio: 5.586451e-02	ci left: 1.920018e-01	ci right 2.030863e-01	k: 3950	n:20000
Cons ci ratio: 1.013482e-02	ci left: 8.775500e-01	ci right 8.865386e-01	k: 17642	n:20000
KS ci ratio: 7.750332e-02	ci left: 1.089878e-01	ci right 1.178249e-01	k: 2267	n:20000
LIN9   20000 perm   4 sec   (5458 perm/sec)   p_kst 1.133500e-01   p_cons 8.821000e-01   p_joint 1.975000e-01

Outputting figure to mutsig2_images.part000000000097/LIN9.3_1737_20000_0.11335_0.8821_0.1975.png
                gene_name: LIN9
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 42 percent done.
LIPG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.220526e-01	ci left: 8.776567e-02	ci right 9.927239e-02	k: 934	n:10000
Cons ci ratio: 3.523883e-02	ci left: 5.431911e-01	ci right 5.627780e-01	k: 5530	n:10000
KS ci ratio: 2.169949e-01	ci left: 2.816365e-02	ci right 3.511272e-02	k: 315	n:10000
LIPG   10000 perm   2 sec   (6116 perm/sec)   p_kst 3.150000e-02   p_cons 5.530000e-01   p_joint 9.340000e-02

Joint ci ratio: 1.194431e-01	ci left: 4.804007e-02	ci right 5.419126e-02	k: 1021	n:20000
Cons ci ratio: 2.477590e-02	ci left: 5.489311e-01	ci right 5.627526e-01	k: 11117	n:20000
KS ci ratio: 1.566712e-01	ci left: 2.796788e-02	ci right 3.276994e-02	k: 606	n:20000
LIPG   20000 perm   4 sec   (5461 perm/sec)   p_kst 3.030000e-02   p_cons 5.558500e-01   p_joint 5.105000e-02

Joint ci ratio: 9.796415e-02	ci left: 4.817930e-02	ci right 5.317484e-02	k: 1519	n:30000
Cons ci ratio: 2.039357e-02	ci left: 5.462178e-01	ci right 5.575055e-01	k: 16556	n:30000
KS ci ratio: 1.271682e-01	ci left: 2.874456e-02	ci right 3.268035e-02	k: 920	n:30000
LIPG   30000 perm   6 sec   (5226 perm/sec)   p_kst 3.066667e-02   p_cons 5.518667e-01   p_joint 5.063333e-02

Joint ci ratio: 7.985051e-02	ci left: 5.455147e-02	ci right 5.911313e-02	k: 2272	n:40000
Cons ci ratio: 1.719654e-02	ci left: 5.601496e-01	ci right 5.698909e-01	k: 22601	n:40000
KS ci ratio: 1.099928e-01	ci left: 2.907980e-02	ci right 3.248877e-02	k: 1230	n:40000
LIPG   40000 perm   8 sec   (4778 perm/sec)   p_kst 3.075000e-02   p_cons 5.650250e-01   p_joint 5.680000e-02

Joint ci ratio: 6.005515e-02	ci left: 7.615705e-02	ci right 8.089202e-02	k: 3925	n:50000
Cons ci ratio: 1.539946e-02	ci left: 5.600803e-01	ci right 5.687922e-01	k: 28222	n:50000
KS ci ratio: 9.807705e-02	ci left: 2.943954e-02	ci right 3.249524e-02	k: 1547	n:50000
LIPG   50000 perm   11 sec   (4703 perm/sec)   p_kst 3.094000e-02   p_cons 5.644400e-01   p_joint 7.850000e-02

Outputting figure to mutsig2_images.part000000000097/LIPG.3_1543_50000_0.03094_0.56444_0.0785.png
                gene_name: LIPG
               theta_stop: 0.098 
                    nperm: 50000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.079 
     ci_joint_bounds_left: 0.076 
    ci_joint_bounds_right: 0.081 

Current progress: 44 percent done.
LIPH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.120178e-02	ci left: 2.819111e-01	ci right 2.998108e-01	k: 2908	n:10000
Cons ci ratio: 6.248709e-02	ci left: 2.734923e-01	ci right 2.912347e-01	k: 2823	n:10000
KS ci ratio: 6.604575e-02	ci left: 2.518194e-01	ci right 2.691203e-01	k: 2604	n:10000
LIPH   10000 perm   2 sec   (6285 perm/sec)   p_kst 2.604000e-01   p_cons 2.823000e-01   p_joint 2.908000e-01

Outputting figure to mutsig2_images.part000000000097/LIPH.3_1396_10000_0.2604_0.2823_0.2908.png
                gene_name: LIPH
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 47 percent done.
LLGL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.032688e-02	ci left: 7.799572e-01	ci right 7.960747e-01	k: 7881	n:10000
Cons ci ratio: 1.377760e-02	ci left: 8.838059e-01	ci right 8.961658e-01	k: 8901	n:10000
KS ci ratio: 2.813322e-02	ci left: 6.506199e-01	ci right 6.692868e-01	k: 6600	n:10000
LLGL2   10000 perm   2 sec   (5507 perm/sec)   p_kst 6.600000e-01   p_cons 8.901000e-01   p_joint 7.881000e-01

Outputting figure to mutsig2_images.part000000000097/LLGL2.3_3226_10000_0.66_0.8901_0.7881.png
                gene_name: LLGL2
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 49 percent done.
LMTK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.223702e-02	ci left: 5.868075e-01	ci right 6.061363e-01	k: 5965	n:10000
Cons ci ratio: 4.734719e-02	ci left: 3.969510e-01	ci right 4.163034e-01	k: 4066	n:10000
KS ci ratio: 4.734719e-02	ci left: 3.969510e-01	ci right 4.163034e-01	k: 4066	n:10000
LMTK2   10000 perm   2 sec   (4149 perm/sec)   p_kst 4.066000e-01   p_cons 4.066000e-01   p_joint 5.965000e-01

Outputting figure to mutsig2_images.part000000000097/LMTK2.3_4568_10000_0.4066_0.4066_0.5965.png
                gene_name: LMTK2
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 51 percent done.
LMX1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.528874e-02	ci left: 5.424899e-01	ci right 5.620796e-01	k: 5523	n:10000
Cons ci ratio: 1.712277e-02	ci left: 8.324623e-01	ci right 8.469393e-01	k: 8398	n:10000
KS ci ratio: 4.874877e-02	ci left: 3.830114e-01	ci right 4.022512e-01	k: 3926	n:10000
LMX1A   10000 perm   2 sec   (6158 perm/sec)   p_kst 3.926000e-01   p_cons 8.398000e-01   p_joint 5.523000e-01

Outputting figure to mutsig2_images.part000000000097/LMX1A.3_1181_10000_0.3926_0.8398_0.5523.png
                gene_name: LMX1A
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 53 percent done.
LMX1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.239779e-02	ci left: 2.184255e-01	ci right 2.349340e-01	k: 2266	n:10000
Cons ci ratio: 1.523591e-02	ci left: 8.620253e-01	ci right 8.753591e-01	k: 8688	n:10000
KS ci ratio: 1.070134e-01	ci left: 1.119342e-01	ci right 1.246891e-01	k: 1182	n:10000
LMX1B   10000 perm   2 sec   (6068 perm/sec)   p_kst 1.182000e-01   p_cons 8.688000e-01   p_joint 2.266000e-01

Joint ci ratio: 5.352748e-02	ci left: 2.057586e-01	ci right 2.171254e-01	k: 4228	n:20000
Cons ci ratio: 1.101449e-02	ci left: 8.588163e-01	ci right 8.683778e-01	k: 17273	n:20000
KS ci ratio: 7.596290e-02	ci left: 1.130188e-01	ci right 1.219927e-01	k: 2349	n:20000
LMX1B   20000 perm   4 sec   (5451 perm/sec)   p_kst 1.174500e-01   p_cons 8.636500e-01   p_joint 2.114000e-01

Outputting figure to mutsig2_images.part000000000097/LMX1B.3_1274_20000_0.11745_0.86365_0.2114.png
                gene_name: LMX1B
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 56 percent done.
LOC285033
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.735789e-02	ci left: 1.602287e-01	ci right 1.749655e-01	k: 1675	n:10000
Cons ci ratio: 7.896600e-02	ci left: 1.898346e-01	ci right 2.055419e-01	k: 1976	n:10000
KS ci ratio: 9.784492e-02	ci left: 1.314920e-01	ci right 1.451194e-01	k: 1382	n:10000
LOC285033   10000 perm   2 sec   (6654 perm/sec)   p_kst 1.382000e-01   p_cons 1.976000e-01   p_joint 1.675000e-01

Outputting figure to mutsig2_images.part000000000097/LOC285033.3_374_10000_0.1382_0.1976_0.1675.png
                gene_name: LOC285033
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 58 percent done.
LOC286238
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.740754e-02	ci left: 1.961390e-01	ci right 2.120337e-01	k: 2040	n:10000
Cons ci ratio: 6.545109e-02	ci left: 2.552813e-01	ci right 2.726564e-01	k: 2639	n:10000
KS ci ratio: 6.616595e-02	ci left: 2.511271e-01	ci right 2.684130e-01	k: 2597	n:10000
LOC286238   10000 perm   1 sec   (6838 perm/sec)   p_kst 2.597000e-01   p_cons 2.639000e-01   p_joint 2.040000e-01

Outputting figure to mutsig2_images.part000000000097/LOC286238.3_347_10000_0.2597_0.2639_0.204.png
                gene_name: LOC286238
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 60 percent done.
LIMA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.592497e-02	ci left: 4.116961e-01	ci right 4.311497e-01	k: 4214	n:10000
Cons ci ratio: 5.589344e-02	ci left: 3.203876e-01	ci right 3.389118e-01	k: 3296	n:10000
KS ci ratio: 1.850394e-02	ci left: 8.100922e-01	ci right 8.253223e-01	k: 8178	n:10000
LIMA1   10000 perm   2 sec   (6021 perm/sec)   p_kst 8.178000e-01   p_cons 3.296000e-01   p_joint 4.214000e-01

Outputting figure to mutsig2_images.part000000000097/LIMA1.2_2323_10000_0.8178_0.3296_0.4214.png
                gene_name: LIMA1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 63 percent done.
LIMK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.456728e-02	ci left: 3.310111e-01	ci right 3.496820e-01	k: 3403	n:10000
Cons ci ratio: 7.450460e-02	ci left: 2.086584e-01	ci right 2.249069e-01	k: 2167	n:10000
KS ci ratio: 5.445811e-02	ci left: 3.319049e-01	ci right 3.505876e-01	k: 3412	n:10000
LIMK2   10000 perm   2 sec   (6025 perm/sec)   p_kst 3.412000e-01   p_cons 2.167000e-01   p_joint 3.403000e-01

Outputting figure to mutsig2_images.part000000000097/LIMK2.2_2394_10000_0.3412_0.2167_0.3403.png
                gene_name: LIMK2
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 65 percent done.
LIMS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.625577e-02	ci left: 8.462127e-01	ci right 8.601809e-01	k: 8533	n:10000
KS ci ratio: 7.905421e-03	ci left: 9.570190e-01	ci right 9.647096e-01	k: 9610	n:10000
LIMS1   10000 perm   2 sec   (6468 perm/sec)   p_kst 9.610000e-01   p_cons 8.533000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000097/LIMS1.2_1014_10000_0.961_0.8533_1.png
                gene_name: LIMS1
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
LIN54
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.766047e-02	ci left: 8.238140e-01	ci right 8.385925e-01	k: 8313	n:10000
KS ci ratio: 2.657053e-01	ci left: 1.846678e-02	ci right 2.421679e-02	k: 212	n:10000
LIN54   10000 perm   2 sec   (5980 perm/sec)   p_kst 2.120000e-02   p_cons 8.313000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 1.252956e-02	ci left: 8.250754e-01	ci right 8.355283e-01	k: 16607	n:20000
KS ci ratio: 1.904138e-01	ci left: 1.877169e-02	ci right 2.276934e-02	k: 414	n:20000
LIN54   20000 perm   4 sec   (5327 perm/sec)   p_kst 2.070000e-02   p_cons 8.303500e-01   p_joint 1

Joint ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
Cons ci ratio: 1.017630e-02	ci left: 8.275523e-01	ci right 8.360500e-01	k: 24955	n:30000
KS ci ratio: 1.560504e-01	ci left: 1.899051e-02	ci right 2.223659e-02	k: 617	n:30000
LIN54   30000 perm   6 sec   (5078 perm/sec)   p_kst 2.056667e-02   p_cons 8.318333e-01   p_joint 1

Joint ci ratio: 9.799510e-05	ci left: 9.999078e-01	ci right 1	k: 40000	n:40000
Cons ci ratio: 8.437129e-03	ci left: 8.400786e-01	ci right 8.472214e-01	k: 33747	n:40000
KS ci ratio: 1.367629e-01	ci left: 1.874709e-02	ci right 2.152319e-02	k: 804	n:40000
LIN54   40000 perm   8 sec   (4922 perm/sec)   p_kst 2.010000e-02   p_cons 8.436750e-01   p_joint 1

Joint ci ratio: 7.839686e-05	ci left: 9.999262e-01	ci right 1	k: 50000	n:50000
Cons ci ratio: 7.542780e-03	ci left: 8.405879e-01	ci right 8.469721e-01	k: 42190	n:50000
KS ci ratio: 1.227769e-01	ci left: 1.875200e-02	ci right 2.122417e-02	k: 998	n:50000
LIN54   50000 perm   10 sec   (4794 perm/sec)   p_kst 1.996000e-02   p_cons 8.438000e-01   p_joint 1

Joint ci ratio: 6.533116e-05	ci left: 9.999385e-01	ci right 1	k: 60000	n:60000
Cons ci ratio: 6.876851e-03	ci left: 8.412060e-01	ci right 8.470274e-01	k: 50648	n:60000
KS ci ratio: 1.119748e-01	ci left: 1.889472e-02	ci right 2.115205e-02	k: 1200	n:60000
LIN54   60000 perm   13 sec   (4689 perm/sec)   p_kst 2.000000e-02   p_cons 8.441333e-01   p_joint 1

Joint ci ratio: 5.599840e-05	ci left: 9.999473e-01	ci right 1	k: 70000	n:70000
Cons ci ratio: 6.398592e-03	ci left: 8.400966e-01	ci right 8.455035e-01	k: 58997	n:70000
KS ci ratio: 1.041309e-01	ci left: 1.880862e-02	ci right 2.088860e-02	k: 1388	n:70000
LIN54   70000 perm   15 sec   (4595 perm/sec)   p_kst 1.982857e-02   p_cons 8.428143e-01   p_joint 1

Joint ci ratio: 4.899878e-05	ci left: 9.999539e-01	ci right 1	k: 80000	n:80000
Cons ci ratio: 5.980845e-03	ci left: 8.404729e-01	ci right 8.455272e-01	k: 67441	n:80000
KS ci ratio: 9.741908e-02	ci left: 1.887023e-02	ci right 2.081481e-02	k: 1586	n:80000
LIN54   80000 perm   18 sec   (4509 perm/sec)   p_kst 1.982500e-02   p_cons 8.430125e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000097/LIN54.2_2298_80000_0.019825_0.84301_1.png
                gene_name: LIN54
               theta_stop: 0.097 
                    nperm: 80000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.021 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
LIN7A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.750290e-02	ci left: 8.263569e-01	ci right 8.410482e-01	k: 8338	n:10000
KS ci ratio: 1.931253e-02	ci left: 7.967918e-01	ci right 8.124303e-01	k: 8047	n:10000
LIN7A   10000 perm   2 sec   (6029 perm/sec)   p_kst 8.047000e-01   p_cons 8.338000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000097/LIN7A.2_722_10000_0.8047_0.8338_1.png
                gene_name: LIN7A
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
LIPA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.977202e-02	ci left: 7.891832e-01	ci right 8.050433e-01	k: 7972	n:10000
Cons ci ratio: 1.297599e-02	ci left: 8.952868e-01	ci right 9.070783e-01	k: 9013	n:10000
KS ci ratio: 3.896750e-02	ci left: 4.930507e-01	ci right 5.127476e-01	k: 5029	n:10000
LIPA   10000 perm   1 sec   (6841 perm/sec)   p_kst 5.029000e-01   p_cons 9.013000e-01   p_joint 7.972000e-01

Outputting figure to mutsig2_images.part000000000097/LIPA.2_1236_10000_0.5029_0.9013_0.7972.png
                gene_name: LIPA
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 74 percent done.
LIPC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.277834e-02	ci left: 8.980579e-01	ci right 9.097056e-01	k: 9040	n:10000
Cons ci ratio: 9.635105e-03	ci left: 9.383791e-01	ci right 9.475607e-01	k: 9431	n:10000
KS ci ratio: 2.809562e-02	ci left: 6.512237e-01	ci right 6.698827e-01	k: 6606	n:10000
LIPC   10000 perm   2 sec   (6396 perm/sec)   p_kst 6.606000e-01   p_cons 9.431000e-01   p_joint 9.040000e-01

Outputting figure to mutsig2_images.part000000000097/LIPC.2_1536_10000_0.6606_0.9431_0.904.png
                gene_name: LIPC
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 77 percent done.
LIPJ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.333732e-02	ci left: 8.901588e-01	ci right 9.022093e-01	k: 8963	n:10000
Cons ci ratio: 2.318688e-02	ci left: 7.320922e-01	ci right 7.493674e-01	k: 7408	n:10000
KS ci ratio: 5.856484e-02	ci left: 3.002475e-01	ci right 3.184636e-01	k: 3093	n:10000
LIPJ   10000 perm   2 sec   (6500 perm/sec)   p_kst 3.093000e-01   p_cons 7.408000e-01   p_joint 8.963000e-01

Outputting figure to mutsig2_images.part000000000097/LIPJ.2_1137_10000_0.3093_0.7408_0.8963.png
                gene_name: LIPJ
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 79 percent done.
LIPK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.555655e-01	ci left: 5.503869e-02	ci right 6.441983e-02	k: 596	n:10000
Cons ci ratio: 2.644396e-01	ci left: 1.865372e-02	ci right 2.442970e-02	k: 214	n:10000
KS ci ratio: 6.259518e-02	ci left: 2.727991e-01	ci right 2.905282e-01	k: 2816	n:10000
LIPK   10000 perm   1 sec   (6802 perm/sec)   p_kst 2.816000e-01   p_cons 2.140000e-02   p_joint 5.960000e-02

Joint ci ratio: 1.481959e-01	ci left: 3.129024e-02	ci right 3.634648e-02	k: 675	n:20000
Cons ci ratio: 1.878865e-01	ci left: 1.929613e-02	ci right 2.334471e-02	k: 425	n:20000
KS ci ratio: 4.381751e-02	ci left: 2.794954e-01	ci right 2.920669e-01	k: 5715	n:20000
LIPK   20000 perm   3 sec   (5970 perm/sec)   p_kst 2.857500e-01   p_cons 2.125000e-02   p_joint 3.375000e-02

Joint ci ratio: 1.331807e-01	ci left: 2.619459e-02	ci right 2.996421e-02	k: 841	n:30000
Cons ci ratio: 1.738379e-01	ci left: 1.521640e-02	ci right 1.814495e-02	k: 499	n:30000
KS ci ratio: 3.570402e-02	ci left: 2.814875e-01	ci right 2.917539e-01	k: 8598	n:30000
LIPK   30000 perm   5 sec   (5641 perm/sec)   p_kst 2.866000e-01   p_cons 1.663333e-02   p_joint 2.803333e-02

Joint ci ratio: 1.364174e-01	ci left: 1.884374e-02	ci right 2.162653e-02	k: 808	n:40000
Cons ci ratio: 1.481560e-01	ci left: 1.592442e-02	ci right 1.849636e-02	k: 687	n:40000
KS ci ratio: 3.086086e-02	ci left: 2.829682e-01	ci right 2.918627e-01	k: 11496	n:40000
LIPK   40000 perm   7 sec   (5434 perm/sec)   p_kst 2.874000e-01   p_cons 1.717500e-02   p_joint 2.020000e-02

Joint ci ratio: 1.346825e-01	ci left: 1.553690e-02	ci right 1.779972e-02	k: 832	n:50000
Cons ci ratio: 1.312779e-01	ci left: 1.636874e-02	ci right 1.868776e-02	k: 875	n:50000
KS ci ratio: 2.746631e-02	ci left: 2.854673e-01	ci right 2.934372e-01	k: 14472	n:50000
LIPK   50000 perm   9 sec   (5271 perm/sec)   p_kst 2.894400e-01   p_cons 1.750000e-02   p_joint 1.664000e-02

Joint ci ratio: 1.226116e-01	ci left: 1.572207e-02	ci right 1.779172e-02	k: 1004	n:60000
Cons ci ratio: 1.207908e-01	ci left: 1.620708e-02	ci right 1.830665e-02	k: 1034	n:60000
KS ci ratio: 2.509007e-02	ci left: 2.855409e-01	ci right 2.928128e-01	k: 17350	n:60000
LIPK   60000 perm   12 sec   (5124 perm/sec)   p_kst 2.891667e-01   p_cons 1.723333e-02   p_joint 1.673333e-02

Joint ci ratio: 1.117601e-01	ci left: 1.630532e-02	ci right 1.824927e-02	k: 1208	n:70000
Cons ci ratio: 1.118543e-01	ci left: 1.627754e-02	ci right 1.821992e-02	k: 1206	n:70000
KS ci ratio: 2.327891e-02	ci left: 2.849319e-01	ci right 2.916571e-01	k: 20180	n:70000
LIPK   70000 perm   14 sec   (5010 perm/sec)   p_kst 2.882857e-01   p_cons 1.722857e-02   p_joint 1.725714e-02

Joint ci ratio: 1.057046e-01	ci left: 1.600593e-02	ci right 1.780435e-02	k: 1351	n:80000
Cons ci ratio: 1.044542e-01	ci left: 1.639559e-02	ci right 1.821466e-02	k: 1383	n:80000
KS ci ratio: 2.175224e-02	ci left: 2.855862e-01	ci right 2.918791e-01	k: 23098	n:80000
LIPK   80000 perm   16 sec   (4900 perm/sec)   p_kst 2.887250e-01   p_cons 1.728750e-02   p_joint 1.688750e-02

Joint ci ratio: 9.939378e-02	ci left: 1.614380e-02	ci right 1.784309e-02	k: 1528	n:90000
Cons ci ratio: 9.816014e-02	ci left: 1.655577e-02	ci right 1.827554e-02	k: 1566	n:90000
KS ci ratio: 2.050786e-02	ci left: 2.857739e-01	ci right 2.917063e-01	k: 25986	n:90000
LIPK   90000 perm   19 sec   (4788 perm/sec)   p_kst 2.887333e-01   p_cons 1.740000e-02   p_joint 1.697778e-02

Outputting figure to mutsig2_images.part000000000097/LIPK.2_1234_90000_0.28873_0.0174_0.016978.png
                gene_name: LIPK
               theta_stop: 0.099 
                    nperm: 90000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.017 
      ci_cons_bounds_left: 0.017 
     ci_cons_bounds_right: 0.018 
                  p_joint: 0.017 
     ci_joint_bounds_left: 0.016 
    ci_joint_bounds_right: 0.018 

Current progress: 81 percent done.
LIX1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.076409e-02	ci left: 6.091973e-01	ci right 6.283334e-01	k: 6188	n:10000
Cons ci ratio: 5.163782e-02	ci left: 3.560517e-01	ci right 3.750267e-01	k: 3655	n:10000
KS ci ratio: 3.719183e-02	ci left: 5.163572e-01	ci right 5.360275e-01	k: 5262	n:10000
LIX1L   10000 perm   1 sec   (6814 perm/sec)   p_kst 5.262000e-01   p_cons 3.655000e-01   p_joint 6.188000e-01

Outputting figure to mutsig2_images.part000000000097/LIX1L.2_1038_10000_0.5262_0.3655_0.6188.png
                gene_name: LIX1L
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 84 percent done.
LMAN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.130635e-01	ci left: 1.012015e-01	ci right 1.134283e-01	k: 1072	n:10000
Cons ci ratio: 4.121321e-02	ci left: 4.650710e-01	ci right 4.847436e-01	k: 4749	n:10000
KS ci ratio: 1.881451e-01	ci left: 3.767505e-02	ci right 4.559480e-02	k: 415	n:10000
LMAN1   10000 perm   2 sec   (6038 perm/sec)   p_kst 4.150000e-02   p_cons 4.749000e-01   p_joint 1.072000e-01

Joint ci ratio: 4.865839e-02	ci left: 2.390022e-01	ci right 2.509720e-01	k: 4899	n:20000
Cons ci ratio: 2.806231e-02	ci left: 4.868473e-01	ci right 5.007545e-01	k: 9876	n:20000
KS ci ratio: 1.350006e-01	ci left: 3.771321e-02	ci right 4.322141e-02	k: 808	n:20000
LMAN1   20000 perm   4 sec   (5510 perm/sec)   p_kst 4.040000e-02   p_cons 4.938000e-01   p_joint 2.449500e-01

Joint ci ratio: 6.577206e-02	ci left: 1.023739e-01	ci right 1.093693e-01	k: 3175	n:30000
Cons ci ratio: 2.305590e-02	ci left: 4.850275e-01	ci right 4.963743e-01	k: 14721	n:30000
KS ci ratio: 1.082674e-01	ci left: 3.959561e-02	ci right 4.416032e-02	k: 1255	n:30000
LMAN1   30000 perm   6 sec   (5284 perm/sec)   p_kst 4.183333e-02   p_cons 4.907000e-01   p_joint 1.058333e-01

Joint ci ratio: 1.486276e-02	ci left: 6.301596e-01	ci right 6.396208e-01	k: 25396	n:40000
Cons ci ratio: 1.993831e-02	ci left: 4.865141e-01	ci right 4.963372e-01	k: 19657	n:40000
KS ci ratio: 9.349108e-02	ci left: 4.012839e-02	ci right 4.408843e-02	k: 1683	n:40000
LMAN1   40000 perm   8 sec   (4991 perm/sec)   p_kst 4.207500e-02   p_cons 4.914250e-01   p_joint 6.349000e-01

Outputting figure to mutsig2_images.part000000000097/LMAN1.2_1585_40000_0.042075_0.49143_0.6349.png
                gene_name: LMAN1
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.042 
        ci_ks_bounds_left: 0.040 
       ci_ks_bounds_right: 0.044 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.64 

Current progress: 86 percent done.
LMBRD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.344901e-03	ci left: 9.417001e-01	ci right 9.506377e-01	k: 9463	n:10000
Cons ci ratio: 4.325118e-02	ci left: 4.411130e-01	ci right 4.607156e-01	k: 4509	n:10000
KS ci ratio: 1.185224e-02	ci left: 9.107001e-01	ci right 9.216561e-01	k: 9163	n:10000
LMBRD1   10000 perm   2 sec   (6398 perm/sec)   p_kst 9.163000e-01   p_cons 4.509000e-01   p_joint 9.463000e-01

Outputting figure to mutsig2_images.part000000000097/LMBRD1.2_1687_10000_0.9163_0.4509_0.9463.png
                gene_name: LMBRD1
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 88 percent done.
LMF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.394965e-02	ci left: 1.714324e-01	ci right 1.865551e-01	k: 1789	n:10000
Cons ci ratio: 2.067437e-01	ci left: 3.110398e-02	ci right 3.837033e-02	k: 346	n:10000
KS ci ratio: 4.388548e-02	ci left: 4.339301e-01	ci right 4.535027e-01	k: 4437	n:10000
LMF2   10000 perm   2 sec   (6108 perm/sec)   p_kst 4.437000e-01   p_cons 3.460000e-02   p_joint 1.789000e-01

Joint ci ratio: 6.142041e-02	ci left: 1.639778e-01	ci right 1.744185e-01	k: 3383	n:20000
Cons ci ratio: 1.484233e-01	ci left: 3.119383e-02	ci right 3.624291e-02	k: 673	n:20000
KS ci ratio: 3.095281e-02	ci left: 4.380959e-01	ci right 4.519200e-01	k: 8900	n:20000
LMF2   20000 perm   4 sec   (5451 perm/sec)   p_kst 4.450000e-01   p_cons 3.365000e-02   p_joint 1.691500e-01

Joint ci ratio: 4.162537e-02	ci left: 2.233947e-01	ci right 2.329247e-01	k: 6844	n:30000
Cons ci ratio: 1.199654e-01	ci left: 3.230143e-02	ci right 3.645605e-02	k: 1030	n:30000
KS ci ratio: 2.533850e-02	ci left: 4.381004e-01	ci right 4.493772e-01	k: 13312	n:30000
LMF2   30000 perm   6 sec   (5216 perm/sec)   p_kst 4.437333e-01   p_cons 3.433333e-02   p_joint 2.281333e-01

Joint ci ratio: 4.536541e-02	ci left: 1.537197e-01	ci right 1.608801e-01	k: 6291	n:40000
Cons ci ratio: 1.037633e-01	ci left: 3.265968e-02	ci right 3.625832e-02	k: 1377	n:40000
KS ci ratio: 2.197561e-02	ci left: 4.381488e-01	ci right 4.479095e-01	k: 17721	n:40000
LMF2   40000 perm   8 sec   (5058 perm/sec)   p_kst 4.430250e-01   p_cons 3.442500e-02   p_joint 1.572750e-01

Joint ci ratio: 6.145929e-02	ci left: 7.292291e-02	ci right 7.756654e-02	k: 3761	n:50000
Cons ci ratio: 9.232431e-02	ci left: 3.319107e-02	ci right 3.642323e-02	k: 1739	n:50000
KS ci ratio: 1.959633e-02	ci left: 4.401578e-01	ci right 4.488887e-01	k: 22226	n:50000
LMF2   50000 perm   10 sec   (4930 perm/sec)   p_kst 4.445200e-01   p_cons 3.478000e-02   p_joint 7.522000e-02

Outputting figure to mutsig2_images.part000000000097/LMF2.2_2180_50000_0.44452_0.03478_0.07522.png
                gene_name: LMF2
               theta_stop: 0.092 
                    nperm: 50000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.035 
      ci_cons_bounds_left: 0.033 
     ci_cons_bounds_right: 0.036 
                  p_joint: 0.075 
     ci_joint_bounds_left: 0.073 
    ci_joint_bounds_right: 0.078 

Current progress: 91 percent done.
LMOD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.859582e-02	ci left: 3.845045e-01	ci right 4.037572e-01	k: 3941	n:10000
Cons ci ratio: 5.518041e-02	ci left: 3.260462e-01	ci right 3.446498e-01	k: 3353	n:10000
KS ci ratio: 4.534601e-02	ci left: 4.178757e-01	ci right 4.373665e-01	k: 4276	n:10000
LMOD2   10000 perm   2 sec   (6384 perm/sec)   p_kst 4.276000e-01   p_cons 3.353000e-01   p_joint 3.941000e-01

Outputting figure to mutsig2_images.part000000000097/LMOD2.2_1656_10000_0.4276_0.3353_0.3941.png
                gene_name: LMOD2
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 93 percent done.
LNPEP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.886136e-02	ci left: 3.819165e-01	ci right 4.011468e-01	k: 3915	n:10000
Cons ci ratio: 2.375804e-01	ci left: 2.334629e-02	ci right 2.973355e-02	k: 264	n:10000
KS ci ratio: 3.208325e-02	ci left: 5.891158e-01	ci right 6.084267e-01	k: 5988	n:10000
LNPEP   10000 perm   2 sec   (5669 perm/sec)   p_kst 5.988000e-01   p_cons 2.640000e-02   p_joint 3.915000e-01

Joint ci ratio: 4.998298e-02	ci left: 2.292863e-01	ci right 2.410908e-01	k: 4703	n:20000
Cons ci ratio: 1.691496e-01	ci left: 2.393452e-02	ci right 2.840468e-02	k: 522	n:20000
KS ci ratio: 2.266392e-02	ci left: 5.924695e-01	ci right 6.061016e-01	k: 11986	n:20000
LNPEP   20000 perm   4 sec   (5049 perm/sec)   p_kst 5.993000e-01   p_cons 2.610000e-02   p_joint 2.351500e-01

Joint ci ratio: 4.213608e-02	ci left: 2.191601e-01	ci right 2.286268e-01	k: 6716	n:30000
Cons ci ratio: 1.391621e-01	ci left: 2.397097e-02	ci right 2.758833e-02	k: 772	n:30000
KS ci ratio: 1.842198e-02	ci left: 5.959002e-01	ci right 6.070135e-01	k: 18044	n:30000
LNPEP   30000 perm   6 sec   (4827 perm/sec)   p_kst 6.014667e-01   p_cons 2.573333e-02   p_joint 2.238667e-01

Joint ci ratio: 3.183018e-02	ci left: 2.705287e-01	ci right 2.793040e-01	k: 10996	n:40000
Cons ci ratio: 1.214080e-01	ci left: 2.385590e-02	ci right 2.696352e-02	k: 1015	n:40000
KS ci ratio: 1.592384e-02	ci left: 5.975591e-01	ci right 6.071760e-01	k: 24095	n:40000
LNPEP   40000 perm   9 sec   (4668 perm/sec)   p_kst 6.023750e-01   p_cons 2.537500e-02   p_joint 2.749000e-01

Joint ci ratio: 1.931470e-02	ci left: 4.473108e-01	ci right 4.560548e-01	k: 22584	n:50000
Cons ci ratio: 1.089434e-01	ci left: 2.386329e-02	ci right 2.663220e-02	k: 1261	n:50000
KS ci ratio: 1.426763e-02	ci left: 5.972329e-01	ci right 6.058353e-01	k: 30077	n:50000
LNPEP   50000 perm   11 sec   (4569 perm/sec)   p_kst 6.015400e-01   p_cons 2.522000e-02   p_joint 4.516800e-01

Joint ci ratio: 1.384285e-02	ci left: 5.680292e-01	ci right 5.759638e-01	k: 34320	n:60000
Cons ci ratio: 9.906292e-02	ci left: 2.417199e-02	ci right 2.670753e-02	k: 1525	n:60000
KS ci ratio: 1.303696e-02	ci left: 5.971520e-01	ci right 6.050048e-01	k: 36065	n:60000
LNPEP   60000 perm   13 sec   (4463 perm/sec)   p_kst 6.010833e-01   p_cons 2.541667e-02   p_joint 5.720000e-01

Outputting figure to mutsig2_images.part000000000097/LNPEP.2_3150_60000_0.60108_0.025417_0.572.png
                gene_name: LNPEP
               theta_stop: 0.099 
                    nperm: 60000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.025 
      ci_cons_bounds_left: 0.024 
     ci_cons_bounds_right: 0.027 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.58 

Current progress: 95 percent done.
LNX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.550165e-02	ci left: 2.549845e-01	ci right 2.723533e-01	k: 2636	n:10000
Cons ci ratio: 1.958891e-01	ci left: 3.471871e-02	ci right 4.235312e-02	k: 384	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
LNX1   10000 perm   2 sec   (6051 perm/sec)   p_kst 1   p_cons 3.840000e-02   p_joint 2.636000e-01

Joint ci ratio: 2.951518e-02	ci left: 4.616641e-01	ci right 4.755450e-01	k: 9372	n:20000
Cons ci ratio: 1.413087e-01	ci left: 3.442644e-02	ci right 3.970925e-02	k: 740	n:20000
KS ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
LNX1   20000 perm   4 sec   (5329 perm/sec)   p_kst 1   p_cons 3.700000e-02   p_joint 4.686000e-01

Joint ci ratio: 4.361582e-02	ci left: 2.074855e-01	ci right 2.167703e-01	k: 6363	n:30000
Cons ci ratio: 1.163885e-01	ci left: 3.430906e-02	ci right 3.858132e-02	k: 1092	n:30000
KS ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
LNX1   30000 perm   6 sec   (5070 perm/sec)   p_kst 1   p_cons 3.640000e-02   p_joint 2.121000e-01

Joint ci ratio: 9.799510e-05	ci left: 9.999078e-01	ci right 1	k: 40000	n:40000
Cons ci ratio: 9.967726e-02	ci left: 3.536653e-02	ci right 3.910104e-02	k: 1488	n:40000
KS ci ratio: 9.799510e-05	ci left: 9.999078e-01	ci right 1	k: 40000	n:40000
LNX1   40000 perm   8 sec   (4940 perm/sec)   p_kst 1   p_cons 3.720000e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000097/LNX1.2_2323_40000_1_0.0372_1.png
                gene_name: LNX1
               theta_stop: 0.100 
                    nperm: 40000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.037 
      ci_cons_bounds_left: 0.035 
     ci_cons_bounds_right: 0.039 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
LOC200726
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.438940e-02	ci left: 8.747995e-01	ci right 8.875775e-01	k: 8813	n:10000
Cons ci ratio: 4.701526e-02	ci left: 4.003376e-01	ci right 4.197148e-01	k: 4100	n:10000
KS ci ratio: 4.571844e-02	ci left: 4.138887e-01	ci right 4.333558e-01	k: 4236	n:10000
LOC200726   10000 perm   1 sec   (6860 perm/sec)   p_kst 4.236000e-01   p_cons 4.100000e-01   p_joint 8.813000e-01

Outputting figure to mutsig2_images.part000000000097/LOC200726.2_554_10000_0.4236_0.41_0.8813.png
                gene_name: LOC200726
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.89 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000097
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 97 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1707>
Subject: Job 8004232: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1707>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000098> was used as the working directory.
Started at Sun Nov 11 15:07:50 2012
Results reported at Sun Nov 11 15:33:40 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000098.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000098.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 98  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000098.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1614.45 sec.
    Max Memory :      4651 MB
    Max Swap   :      7120 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
98
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 98
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 98: processing genes 8777 - 8866
Calculating significance of each gene.
Using projection method.
8777	LOC642587	1
8778	LOC645961	1
8779	LOC646498	1
8780	LOC649330	1.243577e-01
8781	LOC653486	1
8782	LOC728819	1
8783	LOC729020	1
8784	LOC729991-MEF2B	1
8785	LOC81691	9.098401e-01
8786	LOH12CR1	1
8787	LONP1	9.616814e-01
8788	LONP2	3.727533e-01
8789	LONRF1	8.521288e-01
8790	LONRF2	1
8791	LONRF3	6.605715e-02
8792	LOX	7.521894e-01
8793	LOXL1	1
8794	LOXL2	8.652988e-01
8795	LOXL3	8.147270e-01
8796	LOXL4	9.493171e-01
8797	LPA	2.516593e-01
8798	LPAR1	8.151651e-01
8799	LPAR2	2.511762e-01
8800	LPAR3	2.546528e-01
8801	LPAR4	9.791635e-03
8802	LPAR5	1
8803	LPAR6	1
8804	LPCAT1	1
8805	LPCAT2	2.918106e-01
8806	LPCAT3	6.160501e-01
8807	LPCAT4	1
8808	LPGAT1	2.213330e-01
8809	LPHN1	9.972291e-01
8810	LPHN2	3.667004e-01
8811	LPHN3	8.904542e-02
8812	LPIN1	5.085617e-01
8813	LPIN2	9.994518e-02
8814	LPIN3	1
8815	LPL	1
8816	LPO	1
8817	LPP	3.017255e-01
8818	LPPR1	4.994021e-01
8819	LPPR2	6.448885e-01
8820	LPPR3	4.709664e-01
8821	LPPR4	8.675350e-01
8822	LPPR5	2.690129e-02
8823	LPXN	3.728849e-01
8824	LRAT	2.604437e-01
8825	LRBA	9.999793e-01
8826	LRCH1	5.290367e-01
8827	LRCH2	2.701687e-01
8828	LRCH3	1.540158e-01
8829	LRCH4	7.177777e-01
8830	LRDD	9.508561e-01
8831	LRFN1	6.726657e-01
8832	LRFN2	8.936624e-01
8833	LRFN3	9.009006e-01
8834	LRFN4	1
8835	LRFN5	6.282572e-01
8836	LRG1	1.020886e-01
8837	LRGUK	1
8838	LRIG1	1
8839	LRIG2	8.719700e-01
8840	LRIG3	8.881149e-01
8841	LRIT1	2.881651e-02
8842	LRIT2	2.643771e-01
8843	LRIT3	8.098123e-01
8844	LRMP	8.732881e-01
8845	LRP1	1.000000e+00
8846	LRP10	8.785480e-01
8847	LRP11	5.435650e-01
8848	LRP12	3.177489e-01
8849	LRP1B	1
8850	LRP2	1
8851	LRP2BP	3.350926e-01
8852	LRP3	5.292289e-01
8853	LRP4	8.796052e-01
8854	LRP5	9.975785e-01
8855	LRP5L	1
8856	LRP6	1
8857	LRP8	9.219642e-01
8858	LRPAP1	5.032398e-01
8859	LRPPRC	7.748658e-01
8860	LRRC1	6.336325e-01
8861	LRRC10	3.178341e-01
8862	LRRC14	1
8863	LRRC14B	2.825126e-01
8864	LRRC15	1
8865	LRRC16A	7.177841e-01
8866	LRRC16B	9.876690e-01
Done

Running MutSig 2:
Scatter job 98: processing genes 8777 - 8866
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
LRP1B
Processing conservation and coverage...
70% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.247955e-01	ci left: 8.416945e-02	ci right 9.547082e-02	k: 897	n:10000
Cons ci ratio: 9.453827e-02	ci left: 1.397211e-01	ci right 1.536854e-01	k: 1466	n:10000
KS ci ratio: 1.116124e-01	ci left: 1.036391e-01	ci right 1.159892e-01	k: 1097	n:10000
LRP1B   10000 perm   6 sec   (1765 perm/sec)   p_kst 1.097000e-01   p_cons 1.466000e-01   p_joint 8.970000e-02

Joint ci ratio: 1.029005e-01	ci left: 6.415862e-02	ci right 7.116771e-02	k: 1352	n:20000
Cons ci ratio: 6.701042e-02	ci left: 1.411823e-01	ci right 1.510208e-01	k: 2921	n:20000
KS ci ratio: 7.791074e-02	ci left: 1.079558e-01	ci right 1.167573e-01	k: 2246	n:20000
LRP1B   20000 perm   14 sec   (1459 perm/sec)   p_kst 1.123000e-01   p_cons 1.460500e-01   p_joint 6.760000e-02

Joint ci ratio: 7.430191e-02	ci left: 8.173677e-02	ci right 8.807722e-02	k: 2546	n:30000
Cons ci ratio: 5.785045e-02	ci left: 1.288801e-01	ci right 1.365912e-01	k: 3981	n:30000
KS ci ratio: 6.346057e-02	ci left: 1.092412e-01	ci right 1.164340e-01	k: 3384	n:30000
LRP1B   30000 perm   20 sec   (1505 perm/sec)   p_kst 1.128000e-01   p_cons 1.327000e-01   p_joint 8.486667e-02

Outputting figure to mutsig2_images.part000000000098/LRP1B.103_14164_30000_0.1128_0.1327_0.084867.png
                gene_name: LRP1B
               theta_stop: 0.074 
                    nperm: 30000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.085 
     ci_joint_bounds_left: 0.082 
    ci_joint_bounds_right: 0.088 

Current progress: 2 percent done.
LRP2
Processing conservation and coverage...
70% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.005121e-02	ci left: 6.202494e-01	ci right 6.392749e-01	k: 6298	n:10000
Cons ci ratio: 1.462208e-02	ci left: 8.713228e-01	ci right 8.842562e-01	k: 8779	n:10000
KS ci ratio: 3.950888e-02	ci left: 4.861529e-01	ci right 5.058495e-01	k: 4960	n:10000
LRP2   10000 perm   4 sec   (2466 perm/sec)   p_kst 4.960000e-01   p_cons 8.779000e-01   p_joint 6.298000e-01

Outputting figure to mutsig2_images.part000000000098/LRP2.41_14284_10000_0.496_0.8779_0.6298.png
                gene_name: LRP2
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 3 percent done.
LRFN5
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.216342e-02	ci left: 5.879114e-01	ci right 6.072317e-01	k: 5976	n:10000
Cons ci ratio: 4.361983e-02	ci left: 4.369227e-01	ci right 4.565083e-01	k: 4467	n:10000
KS ci ratio: 5.913147e-02	ci left: 2.961823e-01	ci right 3.143313e-01	k: 3052	n:10000
LRFN5   10000 perm   2 sec   (4712 perm/sec)   p_kst 3.052000e-01   p_cons 4.467000e-01   p_joint 5.976000e-01

Outputting figure to mutsig2_images.part000000000098/LRFN5.21_2176_10000_0.3052_0.4467_0.5976.png
                gene_name: LRFN5
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 5 percent done.
LPHN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.699685e-01	ci left: 4.619368e-02	ci right 5.487054e-02	k: 504	n:10000
Cons ci ratio: 1.559459e-02	ci left: 8.565131e-01	ci right 8.700745e-01	k: 8634	n:10000
KS ci ratio: 4.113205e-01	ci left: 7.153353e-03	ci right 1.094096e-02	k: 89	n:10000
LPHN3   10000 perm   2 sec   (4506 perm/sec)   p_kst 8.900000e-03   p_cons 8.634000e-01   p_joint 5.040000e-02

Joint ci ratio: 1.367721e-01	ci left: 3.674594e-02	ci right 4.218899e-02	k: 788	n:20000
Cons ci ratio: 1.109150e-02	ci left: 8.571424e-01	ci right 8.667521e-01	k: 17240	n:20000
KS ci ratio: 2.800644e-01	ci left: 8.341806e-03	ci right 1.110354e-02	k: 193	n:20000
LPHN3   20000 perm   5 sec   (4095 perm/sec)   p_kst 9.650000e-03   p_cons 8.620000e-01   p_joint 3.940000e-02

Joint ci ratio: 1.166102e-01	ci left: 3.417948e-02	ci right 3.844426e-02	k: 1088	n:30000
Cons ci ratio: 8.937619e-03	ci left: 8.611823e-01	ci right 8.689469e-01	k: 25953	n:30000
KS ci ratio: 2.267148e-01	ci left: 8.747748e-03	ci right 1.101535e-02	k: 295	n:30000
LPHN3   30000 perm   8 sec   (3939 perm/sec)   p_kst 9.833333e-03   p_cons 8.651000e-01   p_joint 3.626667e-02

Joint ci ratio: 1.077553e-01	ci left: 3.029677e-02	ci right 3.377160e-02	k: 1280	n:40000
Cons ci ratio: 7.732638e-03	ci left: 8.619406e-01	ci right 8.686563e-01	k: 34613	n:40000
KS ci ratio: 1.985553e-01	ci left: 8.691436e-03	ci right 1.063075e-02	k: 385	n:40000
LPHN3   40000 perm   10 sec   (3834 perm/sec)   p_kst 9.625000e-03   p_cons 8.653250e-01   p_joint 3.200000e-02

Joint ci ratio: 1.062944e-01	ci left: 2.507074e-02	ci right 2.790460e-02	k: 1323	n:50000
Cons ci ratio: 6.912219e-03	ci left: 8.624378e-01	ci right 8.684397e-01	k: 43273	n:50000
KS ci ratio: 1.775008e-01	ci left: 8.802120e-03	ci right 1.053552e-02	k: 482	n:50000
LPHN3   50000 perm   13 sec   (3754 perm/sec)   p_kst 9.640000e-03   p_cons 8.654600e-01   p_joint 2.646000e-02

Joint ci ratio: 9.340612e-02	ci left: 2.718309e-02	ci right 2.986278e-02	k: 1710	n:60000
Cons ci ratio: 6.299359e-03	ci left: 8.630969e-01	ci right 8.685676e-01	k: 51951	n:60000
KS ci ratio: 1.641360e-01	ci left: 8.643348e-03	ci right 1.020466e-02	k: 564	n:60000
LPHN3   60000 perm   16 sec   (3679 perm/sec)   p_kst 9.400000e-03   p_cons 8.658500e-01   p_joint 2.850000e-02

Joint ci ratio: 8.957761e-02	ci left: 2.543446e-02	ci right 2.783357e-02	k: 1863	n:70000
Cons ci ratio: 6.091089e-03	ci left: 8.528016e-01	ci right 8.580261e-01	k: 59880	n:70000
KS ci ratio: 1.524477e-01	ci left: 8.643420e-03	ci right 1.008340e-02	k: 654	n:70000
LPHN3   70000 perm   19 sec   (3616 perm/sec)   p_kst 9.342857e-03   p_cons 8.554286e-01   p_joint 2.661429e-02

Joint ci ratio: 9.229805e-02	ci left: 2.103132e-02	ci right 2.307855e-02	k: 1763	n:80000
Cons ci ratio: 5.692288e-03	ci left: 8.532081e-01	ci right 8.580911e-01	k: 68453	n:80000
KS ci ratio: 1.465640e-01	ci left: 8.212610e-03	ci right 9.523379e-03	k: 708	n:80000
LPHN3   80000 perm   22 sec   (3561 perm/sec)   p_kst 8.850000e-03   p_cons 8.556625e-01   p_joint 2.203750e-02

Joint ci ratio: 9.057171e-02	ci left: 1.946463e-02	ci right 2.132201e-02	k: 1834	n:90000
Cons ci ratio: 5.365433e-03	ci left: 8.534096e-01	ci right 8.580119e-01	k: 77015	n:90000
KS ci ratio: 1.382366e-01	ci left: 8.243068e-03	ci right 9.477789e-03	k: 796	n:90000
LPHN3   90000 perm   26 sec   (3510 perm/sec)   p_kst 8.844444e-03   p_cons 8.557222e-01   p_joint 2.037778e-02

Joint ci ratio: 9.046528e-02	ci left: 1.759559e-02	ci right 1.927251e-02	k: 1842	n:100000
Cons ci ratio: 5.094257e-03	ci left: 8.533256e-01	ci right 8.576937e-01	k: 85552	n:100000
KS ci ratio: 1.310350e-01	ci left: 8.288472e-03	ci right 9.460281e-03	k: 886	n:100000
LPHN3   100000 perm   29 sec   (3464 perm/sec)   p_kst 8.860000e-03   p_cons 8.555200e-01   p_joint 1.842000e-02

Joint ci ratio: 7.742445e-02	ci left: 2.189029e-02	ci right 2.366227e-02	k: 2504	n:110000
Cons ci ratio: 4.856320e-03	ci left: 8.534723e-01	ci right 8.576362e-01	k: 94112	n:110000
KS ci ratio: 1.239602e-01	ci left: 8.450333e-03	ci right 9.575783e-03	k: 990	n:110000
LPHN3   110000 perm   32 sec   (3417 perm/sec)   p_kst 9.000000e-03   p_cons 8.555636e-01   p_joint 2.276364e-02

Joint ci ratio: 8.001532e-02	ci left: 1.882315e-02	ci right 2.040019e-02	k: 2352	n:120000
Cons ci ratio: 4.652332e-03	ci left: 8.534141e-01	ci right 8.574020e-01	k: 102650	n:120000
KS ci ratio: 1.176490e-01	ci left: 8.627080e-03	ci right 9.713505e-03	k: 1099	n:120000
LPHN3   120000 perm   36 sec   (3372 perm/sec)   p_kst 9.158333e-03   p_cons 8.554167e-01   p_joint 1.960000e-02

Joint ci ratio: 7.944310e-02	ci left: 1.765373e-02	ci right 1.912171e-02	k: 2389	n:130000
Cons ci ratio: 4.472476e-03	ci left: 8.533449e-01	ci right 8.571777e-01	k: 111185	n:130000
KS ci ratio: 1.133540e-01	ci left: 8.598410e-03	ci right 9.639048e-03	k: 1184	n:130000
LPHN3   130000 perm   39 sec   (3331 perm/sec)   p_kst 9.107692e-03   p_cons 8.552692e-01   p_joint 1.837692e-02

Joint ci ratio: 7.710208e-02	ci left: 1.742912e-02	ci right 1.883380e-02	k: 2537	n:140000
Cons ci ratio: 4.313722e-03	ci left: 8.531878e-01	ci right 8.568832e-01	k: 119706	n:140000
KS ci ratio: 1.091510e-01	ci left: 8.630048e-03	ci right 9.633297e-03	k: 1277	n:140000
LPHN3   140000 perm   43 sec   (3291 perm/sec)   p_kst 9.121429e-03   p_cons 8.550429e-01   p_joint 1.812143e-02

Joint ci ratio: 7.326622e-02	ci left: 1.804010e-02	ci right 1.941860e-02	k: 2808	n:150000
Cons ci ratio: 4.293364e-03	ci left: 8.456773e-01	ci right 8.493226e-01	k: 127126	n:150000
KS ci ratio: 1.054999e-01	ci left: 8.638609e-03	ci right 9.607175e-03	k: 1367	n:150000
LPHN3   150000 perm   46 sec   (3247 perm/sec)   p_kst 9.113333e-03   p_cons 8.475067e-01   p_joint 1.872000e-02

Joint ci ratio: 6.989231e-02	ci left: 1.860691e-02	ci right 1.996059e-02	k: 3084	n:160000
Cons ci ratio: 4.157539e-03	ci left: 8.457039e-01	ci right 8.492335e-01	k: 135596	n:160000
KS ci ratio: 1.023341e-01	ci left: 8.622223e-03	ci right 9.558196e-03	k: 1453	n:160000
LPHN3   160000 perm   50 sec   (3211 perm/sec)   p_kst 9.081250e-03   p_cons 8.474750e-01   p_joint 1.927500e-02

Joint ci ratio: 6.607721e-02	ci left: 1.961172e-02	ci right 2.095765e-02	k: 3447	n:170000
Cons ci ratio: 4.034849e-03	ci left: 8.456640e-01	ci right 8.490888e-01	k: 144055	n:170000
KS ci ratio: 9.856879e-02	ci left: 8.763073e-03	ci right 9.677311e-03	k: 1566	n:170000
LPHN3   170000 perm   54 sec   (3170 perm/sec)   p_kst 9.211765e-03   p_cons 8.473824e-01   p_joint 2.027647e-02

Outputting figure to mutsig2_images.part000000000098/LPHN3.17_4502_170000_0.0092118_0.84738_0.020276.png
                gene_name: LPHN3
               theta_stop: 0.099 
                    nperm: 170000 
                     p_ks: 0.0092 
        ci_ks_bounds_left: 0.0088 
       ci_ks_bounds_right: 0.0097 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.020 
     ci_joint_bounds_left: 0.020 
    ci_joint_bounds_right: 0.021 

Current progress: 7 percent done.
LPA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.195183e-01	ci left: 2.750089e-02	ci right 3.437595e-02	k: 308	n:10000
Cons ci ratio: 6.439016e-02	ci left: 2.616134e-01	ci right 2.791206e-01	k: 2703	n:10000
KS ci ratio: 3.527114e-01	ci left: 1.005013e-02	ci right 1.444087e-02	k: 121	n:10000
LPA   10000 perm   3 sec   (3884 perm/sec)   p_kst 1.210000e-02   p_cons 2.703000e-01   p_joint 3.080000e-02

Joint ci ratio: 2.010635e-01	ci left: 1.677277e-02	ci right 2.056900e-02	k: 372	n:20000
Cons ci ratio: 4.653867e-02	ci left: 2.557173e-01	ci right 2.679520e-01	k: 5236	n:20000
KS ci ratio: 2.439040e-01	ci left: 1.119427e-02	ci right 1.434975e-02	k: 254	n:20000
LPA   20000 perm   6 sec   (3545 perm/sec)   p_kst 1.270000e-02   p_cons 2.618000e-01   p_joint 1.860000e-02

Joint ci ratio: 1.903900e-01	ci left: 1.260575e-02	ci right 1.528959e-02	k: 417	n:30000
Cons ci ratio: 3.889210e-02	ci left: 2.480218e-01	ci right 2.578927e-01	k: 7588	n:30000
KS ci ratio: 1.937065e-01	ci left: 1.216125e-02	ci right 1.480087e-02	k: 403	n:30000
LPA   30000 perm   9 sec   (3415 perm/sec)   p_kst 1.343333e-02   p_cons 2.529333e-01   p_joint 1.390000e-02

Joint ci ratio: 1.489287e-01	ci left: 1.575582e-02	ci right 1.831498e-02	k: 680	n:40000
Cons ci ratio: 3.366304e-02	ci left: 2.488944e-01	ci right 2.574414e-01	k: 10126	n:40000
KS ci ratio: 1.693020e-01	ci left: 1.210449e-02	ci right 1.436699e-02	k: 528	n:40000
LPA   40000 perm   12 sec   (3336 perm/sec)   p_kst 1.320000e-02   p_cons 2.531500e-01   p_joint 1.700000e-02

Joint ci ratio: 1.651664e-01	ci left: 1.021932e-02	ci right 1.207809e-02	k: 556	n:50000
Cons ci ratio: 3.000245e-02	ci left: 2.506864e-01	ci right 2.583421e-01	k: 12725	n:50000
KS ci ratio: 1.537121e-01	ci left: 1.185230e-02	ci right 1.384486e-02	k: 641	n:50000
LPA   50000 perm   15 sec   (3273 perm/sec)   p_kst 1.282000e-02   p_cons 2.545000e-01   p_joint 1.112000e-02

Joint ci ratio: 1.806872e-01	ci left: 7.079805e-03	ci right 8.501759e-03	k: 466	n:60000
Cons ci ratio: 2.739103e-02	ci left: 2.509851e-01	ci right 2.579720e-01	k: 15268	n:60000
KS ci ratio: 1.401722e-01	ci left: 1.196410e-02	ci right 1.378347e-02	k: 771	n:60000
LPA   60000 perm   19 sec   (3218 perm/sec)   p_kst 1.285000e-02   p_cons 2.544667e-01   p_joint 7.766667e-03

Joint ci ratio: 1.350905e-01	ci left: 1.108223e-02	ci right 1.270147e-02	k: 831	n:70000
Cons ci ratio: 2.535997e-02	ci left: 2.512336e-01	ci right 2.577010e-01	k: 17812	n:70000
KS ci ratio: 1.311582e-01	ci left: 1.177300e-02	ci right 1.343920e-02	k: 881	n:70000
LPA   70000 perm   22 sec   (3169 perm/sec)   p_kst 1.258571e-02   p_cons 2.544571e-01   p_joint 1.187143e-02

Joint ci ratio: 1.313381e-01	ci left: 1.028876e-02	ci right 1.174703e-02	k: 880	n:80000
Cons ci ratio: 2.378926e-02	ci left: 2.503762e-01	ci right 2.564167e-01	k: 20271	n:80000
KS ci ratio: 1.217730e-01	ci left: 1.200826e-02	ci right 1.357737e-02	k: 1022	n:80000
LPA   80000 perm   26 sec   (3126 perm/sec)   p_kst 1.277500e-02   p_cons 2.533875e-01   p_joint 1.100000e-02

Joint ci ratio: 1.304509e-01	ci left: 9.284961e-03	ci right 1.059136e-02	k: 893	n:90000
Cons ci ratio: 2.248221e-02	ci left: 2.496531e-01	ci right 2.553407e-01	k: 22724	n:90000
KS ci ratio: 1.141016e-01	ci left: 1.220534e-02	ci right 1.369296e-02	k: 1164	n:90000
LPA   90000 perm   29 sec   (3082 perm/sec)   p_kst 1.293333e-02   p_cons 2.524889e-01   p_joint 9.922222e-03

Joint ci ratio: 1.269130e-01	ci left: 8.849920e-03	ci right 1.005879e-02	k: 944	n:100000
Cons ci ratio: 2.133867e-02	ci left: 2.496202e-01	ci right 2.550142e-01	k: 25231	n:100000
KS ci ratio: 1.083500e-01	ci left: 1.221949e-02	ci right 1.362897e-02	k: 1291	n:100000
LPA   100000 perm   33 sec   (3047 perm/sec)   p_kst 1.291000e-02   p_cons 2.523100e-01   p_joint 9.440000e-03

Joint ci ratio: 1.043997e-01	ci left: 1.199346e-02	ci right 1.332333e-02	k: 1391	n:110000
Cons ci ratio: 1.993404e-02	ci left: 2.575094e-01	ci right 2.627033e-01	k: 28611	n:110000
KS ci ratio: 1.037225e-01	ci left: 1.215289e-02	ci right 1.349116e-02	k: 1409	n:110000
LPA   110000 perm   36 sec   (3015 perm/sec)   p_kst 1.280909e-02   p_cons 2.601000e-01   p_joint 1.264545e-02

Joint ci ratio: 9.229984e-02	ci left: 1.412437e-02	ci right 1.549922e-02	k: 1776	n:120000
Cons ci ratio: 1.909411e-02	ci left: 2.574451e-01	ci right 2.624165e-01	k: 31191	n:120000
KS ci ratio: 9.997329e-02	ci left: 1.201718e-02	ci right 1.328987e-02	k: 1517	n:120000
LPA   120000 perm   40 sec   (2984 perm/sec)   p_kst 1.264167e-02   p_cons 2.599250e-01   p_joint 1.480000e-02

Outputting figure to mutsig2_images.part000000000098/LPA.15_6279_120000_0.012642_0.25993_0.0148.png
                gene_name: LPA
               theta_stop: 0.100 
                    nperm: 120000 
                     p_ks: 0.013 
        ci_ks_bounds_left: 0.012 
       ci_ks_bounds_right: 0.013 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.015 
     ci_joint_bounds_left: 0.014 
    ci_joint_bounds_right: 0.015 

Current progress: 9 percent done.
LRP1
Processing conservation and coverage...
71% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.771208e-02	ci left: 3.932662e-01	ci right 4.125904e-01	k: 4029	n:10000
Cons ci ratio: 8.564455e-02	ci left: 1.657308e-01	ci right 1.806601e-01	k: 1731	n:10000
KS ci ratio: 3.518897e-02	ci left: 5.438924e-01	ci right 5.634763e-01	k: 5537	n:10000
LRP1   10000 perm   3 sec   (2936 perm/sec)   p_kst 5.537000e-01   p_cons 1.731000e-01   p_joint 4.029000e-01

Outputting figure to mutsig2_images.part000000000098/LRP1.15_13991_10000_0.5537_0.1731_0.4029.png
                gene_name: LRP1
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 10 percent done.
LRBA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.539792e-01	ci left: 5.726273e-03	ci right 9.170022e-03	k: 73	n:10000
Cons ci ratio: 4.624658e-02	ci left: 4.083079e-01	ci right 4.277399e-01	k: 4180	n:10000
KS ci ratio: 1.385306e+00	ci left: 2.814811e-04	ci right 1.441732e-03	k: 7	n:10000
LRBA   10000 perm   3 sec   (3599 perm/sec)   p_kst 7.000000e-04   p_cons 4.180000e-01   p_joint 7.300000e-03

Joint ci ratio: 3.727189e-01	ci left: 4.477090e-03	ci right 6.570623e-03	k: 109	n:20000
Cons ci ratio: 3.263046e-02	ci left: 4.122490e-01	ci right 4.259746e-01	k: 8382	n:20000
KS ci ratio: 8.352662e-01	ci left: 6.500803e-04	ci right 1.604591e-03	k: 21	n:20000
LRBA   20000 perm   6 sec   (3330 perm/sec)   p_kst 1.050000e-03   p_cons 4.191000e-01   p_joint 5.450000e-03

Joint ci ratio: 4.220912e-01	ci left: 2.263774e-03	ci right 3.502286e-03	k: 85	n:30000
Cons ci ratio: 2.680461e-02	ci left: 4.105805e-01	ci right 4.217691e-01	k: 12485	n:30000
KS ci ratio: 6.529304e-01	ci left: 8.127564e-04	ci right 1.622181e-03	k: 35	n:30000
LRBA   30000 perm   9 sec   (3225 perm/sec)   p_kst 1.166667e-03   p_cons 4.161667e-01   p_joint 2.833333e-03

Joint ci ratio: 4.017006e-01	ci left: 1.899444e-03	ci right 2.875048e-03	k: 94	n:40000
Cons ci ratio: 2.321702e-02	ci left: 4.112633e-01	ci right 4.209489e-01	k: 16644	n:40000
KS ci ratio: 5.654566e-01	ci left: 8.634696e-04	ci right 1.562198e-03	k: 47	n:40000
LRBA   40000 perm   13 sec   (3151 perm/sec)   p_kst 1.175000e-03   p_cons 4.161000e-01   p_joint 2.350000e-03

Joint ci ratio: 3.667192e-01	ci left: 1.862912e-03	ci right 2.716522e-03	k: 113	n:50000
Cons ci ratio: 2.132832e-02	ci left: 3.988761e-01	ci right 4.074952e-01	k: 20159	n:50000
KS ci ratio: 5.235334e-01	ci left: 8.287747e-04	ci right 1.431564e-03	k: 55	n:50000
LRBA   50000 perm   16 sec   (3099 perm/sec)   p_kst 1.100000e-03   p_cons 4.031800e-01   p_joint 2.260000e-03

Joint ci ratio: 3.804044e-01	ci left: 1.431543e-03	ci right 2.118091e-03	k: 105	n:60000
Cons ci ratio: 1.948551e-02	ci left: 3.988720e-01	ci right 4.067374e-01	k: 24168	n:60000
KS ci ratio: 4.682523e-01	ci left: 8.948754e-04	ci right 1.455176e-03	k: 69	n:60000
LRBA   60000 perm   20 sec   (3053 perm/sec)   p_kst 1.150000e-03   p_cons 4.028000e-01   p_joint 1.750000e-03

Joint ci ratio: 2.149511e-01	ci left: 4.220328e-03	ci right 5.249959e-03	k: 330	n:70000
Cons ci ratio: 1.804177e-02	ci left: 3.991208e-01	ci right 4.064015e-01	k: 28193	n:70000
KS ci ratio: 4.224417e-01	ci left: 9.700399e-04	ci right 1.501267e-03	k: 85	n:70000
LRBA   70000 perm   23 sec   (3008 perm/sec)   p_kst 1.214286e-03   p_cons 4.027571e-01   p_joint 4.714286e-03

Joint ci ratio: 1.995597e-01	ci left: 4.320966e-03	ci right 5.290483e-03	k: 383	n:80000
Cons ci ratio: 1.684312e-02	ci left: 4.003099e-01	ci right 4.071221e-01	k: 32297	n:80000
KS ci ratio: 3.998407e-01	ci left: 9.608614e-04	ci right 1.451465e-03	k: 95	n:80000
LRBA   80000 perm   27 sec   (2962 perm/sec)   p_kst 1.187500e-03   p_cons 4.037125e-01   p_joint 4.787500e-03

Joint ci ratio: 1.689710e-01	ci left: 5.442009e-03	ci right 6.456898e-03	k: 534	n:90000
Cons ci ratio: 1.588873e-02	ci left: 4.002369e-01	ci right 4.066582e-01	k: 36310	n:90000
KS ci ratio: 3.735268e-01	ci left: 9.945505e-04	ci right 1.460778e-03	k: 109	n:90000
LRBA   90000 perm   31 sec   (2924 perm/sec)   p_kst 1.211111e-03   p_cons 4.034444e-01   p_joint 5.933333e-03

Joint ci ratio: 1.607693e-01	ci left: 5.434710e-03	ci right 6.394289e-03	k: 590	n:100000
Cons ci ratio: 1.510490e-02	ci left: 3.993985e-01	ci right 4.054872e-01	k: 40244	n:100000
KS ci ratio: 3.462588e-01	ci left: 1.058848e-03	ci right 1.510877e-03	k: 127	n:100000
LRBA   100000 perm   35 sec   (2889 perm/sec)   p_kst 1.270000e-03   p_cons 4.024400e-01   p_joint 5.900000e-03

Joint ci ratio: 1.258975e-01	ci left: 8.186059e-03	ci right 9.294622e-03	k: 960	n:110000
Cons ci ratio: 1.441599e-02	ci left: 3.990734e-01	ci right 4.048772e-01	k: 44217	n:110000
KS ci ratio: 3.310881e-01	ci left: 1.062408e-03	ci right 1.491855e-03	k: 139	n:110000
LRBA   110000 perm   39 sec   (2853 perm/sec)   p_kst 1.263636e-03   p_cons 4.019727e-01   p_joint 8.727273e-03

Joint ci ratio: 1.210257e-01	ci left: 8.141880e-03	ci right 9.198737e-03	k: 1039	n:120000
Cons ci ratio: 1.380197e-02	ci left: 3.992075e-01	ci right 4.047639e-01	k: 48238	n:120000
KS ci ratio: 3.156785e-01	ci left: 1.081077e-03	ci right 1.493631e-03	k: 153	n:120000
LRBA   120000 perm   43 sec   (2820 perm/sec)   p_kst 1.275000e-03   p_cons 4.019833e-01   p_joint 8.658333e-03

Joint ci ratio: 1.357944e-01	ci left: 5.936546e-03	ci right 6.808770e-03	k: 827	n:130000
Cons ci ratio: 1.325688e-02	ci left: 3.994484e-01	ci right 4.047868e-01	k: 52275	n:130000
KS ci ratio: 3.040555e-01	ci left: 1.083050e-03	ci right 1.478198e-03	k: 165	n:130000
LRBA   130000 perm   47 sec   (2791 perm/sec)   p_kst 1.269231e-03   p_cons 4.021154e-01   p_joint 6.361538e-03

Joint ci ratio: 1.335721e-01	ci left: 5.705722e-03	ci right 6.529221e-03	k: 855	n:140000
Cons ci ratio: 1.277925e-02	ci left: 3.993731e-01	ci right 4.045167e-01	k: 56272	n:140000
KS ci ratio: 2.895843e-01	ci left: 1.118085e-03	ci right 1.503047e-03	k: 182	n:140000
LRBA   140000 perm   51 sec   (2762 perm/sec)   p_kst 1.300000e-03   p_cons 4.019429e-01   p_joint 6.107143e-03

Joint ci ratio: 1.308600e-01	ci left: 5.557373e-03	ci right 6.341908e-03	k: 891	n:150000
Cons ci ratio: 1.235269e-02	ci left: 3.991977e-01	ci right 4.041661e-01	k: 60252	n:150000
KS ci ratio: 2.805336e-01	ci left: 1.117828e-03	ci right 1.488547e-03	k: 194	n:150000
LRBA   150000 perm   55 sec   (2733 perm/sec)   p_kst 1.293333e-03   p_cons 4.016800e-01   p_joint 5.940000e-03

Joint ci ratio: 1.297916e-01	ci left: 5.300685e-03	ci right 6.042400e-03	k: 906	n:160000
Cons ci ratio: 1.194193e-02	ci left: 4.000208e-01	ci right 4.048327e-01	k: 64388	n:160000
KS ci ratio: 2.742790e-01	ci left: 1.100300e-03	ci right 1.455668e-03	k: 203	n:160000
LRBA   160000 perm   59 sec   (2706 perm/sec)   p_kst 1.268750e-03   p_cons 4.024250e-01   p_joint 5.662500e-03

Joint ci ratio: 1.294551e-01	ci left: 5.017290e-03	ci right 5.717388e-03	k: 911	n:170000
Cons ci ratio: 1.158471e-02	ci left: 4.001205e-01	ci right 4.047887e-01	k: 68417	n:170000
KS ci ratio: 2.665519e-01	ci left: 1.101380e-03	ci right 1.445402e-03	k: 215	n:170000
LRBA   170000 perm   63 sec   (2679 perm/sec)   p_kst 1.264706e-03   p_cons 4.024529e-01   p_joint 5.358824e-03

Joint ci ratio: 1.275899e-01	ci left: 4.883707e-03	ci right 5.554602e-03	k: 938	n:180000
Cons ci ratio: 1.127271e-02	ci left: 3.995728e-01	ci right 4.041081e-01	k: 72331	n:180000
KS ci ratio: 2.571940e-01	ci left: 1.123250e-03	ci right 1.459809e-03	k: 231	n:180000
LRBA   180000 perm   68 sec   (2653 perm/sec)   p_kst 1.283333e-03   p_cons 4.018389e-01   p_joint 5.211111e-03

Joint ci ratio: 1.265287e-01	ci left: 4.708177e-03	ci right 5.349174e-03	k: 954	n:190000
Cons ci ratio: 1.097955e-02	ci left: 3.993052e-01	ci right 4.037188e-01	k: 76287	n:190000
KS ci ratio: 2.507904e-01	ci left: 1.123269e-03	ci right 1.450147e-03	k: 243	n:190000
LRBA   190000 perm   72 sec   (2626 perm/sec)   p_kst 1.278947e-03   p_cons 4.015105e-01   p_joint 5.021053e-03

Joint ci ratio: 1.276234e-01	ci left: 4.395265e-03	ci right 4.999228e-03	k: 938	n:200000
Cons ci ratio: 1.068732e-02	ci left: 4.000000e-01	ci right 4.043028e-01	k: 80430	n:200000
KS ci ratio: 2.458058e-01	ci left: 1.113994e-03	ci right 1.430745e-03	k: 253	n:200000
LRBA   200000 perm   77 sec   (2600 perm/sec)   p_kst 1.265000e-03   p_cons 4.021500e-01   p_joint 4.690000e-03

Joint ci ratio: 1.290253e-01	ci left: 4.093745e-03	ci right 4.662926e-03	k: 918	n:210000
Cons ci ratio: 1.043054e-02	ci left: 4.000162e-01	ci right 4.042151e-01	k: 84444	n:210000
KS ci ratio: 2.392987e-01	ci left: 1.123563e-03	ci right 1.433324e-03	k: 267	n:210000
LRBA   210000 perm   82 sec   (2577 perm/sec)   p_kst 1.271429e-03   p_cons 4.021143e-01   p_joint 4.371429e-03

Joint ci ratio: 1.293922e-01	ci left: 3.885646e-03	ci right 4.427547e-03	k: 913	n:220000
Cons ci ratio: 1.019065e-02	ci left: 4.000683e-01	ci right 4.041706e-01	k: 88466	n:220000
KS ci ratio: 2.336977e-01	ci left: 1.128082e-03	ci right 1.430758e-03	k: 280	n:220000
LRBA   220000 perm   86 sec   (2552 perm/sec)   p_kst 1.272727e-03   p_cons 4.021182e-01   p_joint 4.150000e-03

Joint ci ratio: 1.277994e-01	ci left: 3.813478e-03	ci right 4.338271e-03	k: 936	n:230000
Cons ci ratio: 9.969645e-03	ci left: 3.999692e-01	ci right 4.039811e-01	k: 92454	n:230000
KS ci ratio: 2.308431e-01	ci left: 1.107698e-03	ci right 1.400756e-03	k: 287	n:230000
LRBA   230000 perm   91 sec   (2528 perm/sec)   p_kst 1.247826e-03   p_cons 4.019739e-01   p_joint 4.069565e-03

Joint ci ratio: 1.097931e-01	ci left: 4.993153e-03	ci right 5.577226e-03	k: 1267	n:240000
Cons ci ratio: 9.759715e-03	ci left: 4.000125e-01	ci right 4.039398e-01	k: 96474	n:240000
KS ci ratio: 2.258028e-01	ci left: 1.112613e-03	ci right 1.399650e-03	k: 300	n:240000
LRBA   240000 perm   96 sec   (2502 perm/sec)   p_kst 1.250000e-03   p_cons 4.019750e-01   p_joint 5.279167e-03

Joint ci ratio: 1.095446e-01	ci left: 4.816744e-03	ci right 5.378824e-03	k: 1273	n:250000
Cons ci ratio: 9.563148e-03	ci left: 4.000212e-01	ci right 4.038690e-01	k: 100486	n:250000
KS ci ratio: 2.200291e-01	ci left: 1.128536e-03	ci right 1.411230e-03	k: 316	n:250000
LRBA   250000 perm   101 sec   (2477 perm/sec)   p_kst 1.264000e-03   p_cons 4.019440e-01   p_joint 5.092000e-03

Joint ci ratio: 1.084908e-01	ci left: 4.725004e-03	ci right 5.270735e-03	k: 1298	n:260000
Cons ci ratio: 9.376349e-03	ci left: 4.001146e-01	ci right 4.038876e-01	k: 104520	n:260000
KS ci ratio: 2.163088e-01	ci left: 1.125127e-03	ci right 1.401568e-03	k: 327	n:260000
LRBA   260000 perm   106 sec   (2455 perm/sec)   p_kst 1.257692e-03   p_cons 4.020000e-01   p_joint 4.992308e-03

Joint ci ratio: 1.069806e-01	ci left: 4.683343e-03	ci right 5.216258e-03	k: 1335	n:270000
Cons ci ratio: 9.202070e-03	ci left: 4.000980e-01	ci right 4.038004e-01	k: 108526	n:270000
KS ci ratio: 2.112172e-01	ci left: 1.139544e-03	ci right 1.412084e-03	k: 343	n:270000
LRBA   270000 perm   111 sec   (2431 perm/sec)   p_kst 1.270370e-03   p_cons 4.019481e-01   p_joint 4.944444e-03

Joint ci ratio: 9.274813e-02	ci left: 6.045156e-03	ci right 6.636560e-03	k: 1774	n:280000
Cons ci ratio: 9.037429e-03	ci left: 4.000690e-01	ci right 4.037045e-01	k: 112528	n:280000
KS ci ratio: 2.070456e-01	ci left: 1.146228e-03	ci right 1.414266e-03	k: 357	n:280000
LRBA   280000 perm   116 sec   (2409 perm/sec)   p_kst 1.275000e-03   p_cons 4.018857e-01   p_joint 6.335714e-03

Joint ci ratio: 9.244445e-02	ci left: 5.877100e-03	ci right 6.450078e-03	k: 1786	n:290000
Cons ci ratio: 8.876289e-03	ci left: 4.003147e-01	ci right 4.038873e-01	k: 116609	n:290000
KS ci ratio: 2.042141e-01	ci left: 1.139409e-03	ci right 1.401755e-03	k: 367	n:290000
LRBA   290000 perm   121 sec   (2387 perm/sec)   p_kst 1.265517e-03   p_cons 4.021000e-01   p_joint 6.158621e-03

Joint ci ratio: 9.703941e-02	ci left: 5.147380e-03	ci right 5.675577e-03	k: 1622	n:300000
Cons ci ratio: 8.729096e-03	ci left: 4.002348e-01	ci right 4.037471e-01	k: 120597	n:300000
KS ci ratio: 2.004366e-01	ci left: 1.145732e-03	ci right 1.404057e-03	k: 381	n:300000
LRBA   300000 perm   127 sec   (2368 perm/sec)   p_kst 1.270000e-03   p_cons 4.019900e-01   p_joint 5.406667e-03

Joint ci ratio: 9.560770e-02	ci left: 5.135591e-03	ci right 5.654367e-03	k: 1671	n:310000
Cons ci ratio: 8.588068e-03	ci left: 4.002121e-01	ci right 4.036672e-01	k: 124601	n:310000
KS ci ratio: 1.971106e-01	ci left: 1.148622e-03	ci right 1.402784e-03	k: 394	n:310000
LRBA   310000 perm   132 sec   (2348 perm/sec)   p_kst 1.270968e-03   p_cons 4.019387e-01   p_joint 5.390323e-03

Joint ci ratio: 9.878362e-02	ci left: 4.654895e-03	ci right 5.141637e-03	k: 1566	n:320000
Cons ci ratio: 8.453826e-03	ci left: 4.001819e-01	ci right 4.035824e-01	k: 128602	n:320000
KS ci ratio: 1.944226e-01	ci left: 1.145417e-03	ci right 1.395005e-03	k: 405	n:320000
LRBA   320000 perm   137 sec   (2329 perm/sec)   p_kst 1.265625e-03   p_cons 4.018813e-01   p_joint 4.893750e-03

Joint ci ratio: 8.287935e-02	ci left: 6.454166e-03	ci right 7.015155e-03	k: 2221	n:330000
Cons ci ratio: 8.327999e-03	ci left: 4.000207e-01	ci right 4.033689e-01	k: 132559	n:330000
KS ci ratio: 1.907003e-01	ci left: 1.156856e-03	ci right 1.403551e-03	k: 421	n:330000
LRBA   330000 perm   143 sec   (2309 perm/sec)   p_kst 1.275758e-03   p_cons 4.016939e-01   p_joint 6.730303e-03

Joint ci ratio: 9.001331e-02	ci left: 5.297284e-03	ci right 5.799435e-03	k: 1885	n:340000
Cons ci ratio: 8.210188e-03	ci left: 3.997194e-01	ci right 4.030176e-01	k: 136465	n:340000
KS ci ratio: 1.889193e-01	ci left: 1.145241e-03	ci right 1.386917e-03	k: 429	n:340000
LRBA   340000 perm   149 sec   (2289 perm/sec)   p_kst 1.261765e-03   p_cons 4.013676e-01   p_joint 5.544118e-03

Joint ci ratio: 8.947359e-02	ci left: 5.210162e-03	ci right 5.700938e-03	k: 1908	n:350000
Cons ci ratio: 8.093960e-03	ci left: 3.996298e-01	ci right 4.028804e-01	k: 140439	n:350000
KS ci ratio: 1.848773e-01	ci left: 1.164267e-03	ci right 1.404112e-03	k: 448	n:350000
LRBA   350000 perm   154 sec   (2270 perm/sec)   p_kst 1.280000e-03   p_cons 4.012543e-01   p_joint 5.451429e-03

Joint ci ratio: 1.007334e-01	ci left: 3.977814e-03	ci right 4.402450e-03	k: 1507	n:360000
Cons ci ratio: 8.094759e-03	ci left: 3.928613e-01	ci right 3.960571e-01	k: 142005	n:360000
KS ci ratio: 1.808906e-01	ci left: 1.184940e-03	ci right 1.423203e-03	k: 468	n:360000
LRBA   360000 perm   160 sec   (2252 perm/sec)   p_kst 1.300000e-03   p_cons 3.944583e-01   p_joint 4.186111e-03

Joint ci ratio: 9.955287e-02	ci left: 3.965165e-03	ci right 4.383200e-03	k: 1543	n:370000
Cons ci ratio: 7.990072e-03	ci left: 3.925574e-01	ci right 3.957092e-01	k: 145829	n:370000
KS ci ratio: 1.788064e-01	ci left: 1.181306e-03	ci right 1.415806e-03	k: 479	n:370000
LRBA   370000 perm   166 sec   (2233 perm/sec)   p_kst 1.294595e-03   p_cons 3.941324e-01   p_joint 4.170270e-03

Joint ci ratio: 9.816370e-02	ci left: 3.973746e-03	ci right 4.386503e-03	k: 1587	n:380000
Cons ci ratio: 7.886035e-03	ci left: 3.924696e-01	ci right 3.955794e-01	k: 149729	n:380000
KS ci ratio: 1.760759e-01	ci left: 1.187940e-03	ci right 1.419772e-03	k: 494	n:380000
LRBA   380000 perm   172 sec   (2214 perm/sec)   p_kst 1.300000e-03   p_cons 3.940237e-01   p_joint 4.176316e-03

Joint ci ratio: 9.936992e-02	ci left: 3.776807e-03	ci right 4.174209e-03	k: 1549	n:390000
Cons ci ratio: 7.785833e-03	ci left: 3.923942e-01	ci right 3.954638e-01	k: 153632	n:390000
KS ci ratio: 1.739799e-01	ci left: 1.186901e-03	ci right 1.415484e-03	k: 506	n:390000
LRBA   390000 perm   178 sec   (2196 perm/sec)   p_kst 1.297436e-03   p_cons 3.939282e-01   p_joint 3.971795e-03

Joint ci ratio: 9.839196e-02	ci left: 3.757968e-03	ci right 4.149271e-03	k: 1580	n:400000
Cons ci ratio: 7.686820e-03	ci left: 3.924803e-01	ci right 3.955113e-01	k: 157598	n:400000
KS ci ratio: 1.726244e-01	ci left: 1.176360e-03	ci right 1.400964e-03	k: 514	n:400000
LRBA   400000 perm   184 sec   (2174 perm/sec)   p_kst 1.285000e-03   p_cons 3.939950e-01   p_joint 3.950000e-03

Joint ci ratio: 9.783917e-02	ci left: 3.709131e-03	ci right 4.093054e-03	k: 1598	n:410000
Cons ci ratio: 7.585949e-03	ci left: 3.929109e-01	ci right 3.959052e-01	k: 161707	n:410000
KS ci ratio: 1.708102e-01	ci left: 1.173345e-03	ci right 1.394776e-03	k: 525	n:410000
LRBA   410000 perm   190 sec   (2156 perm/sec)   p_kst 1.280488e-03   p_cons 3.944073e-01   p_joint 3.897561e-03

Joint ci ratio: 9.769054e-02	ci left: 3.632425e-03	ci right 4.007805e-03	k: 1603	n:420000
Cons ci ratio: 7.496183e-03	ci left: 3.928596e-01	ci right 3.958180e-01	k: 165622	n:420000
KS ci ratio: 1.684252e-01	ci left: 1.179606e-03	ci right 1.398795e-03	k: 540	n:420000
LRBA   420000 perm   196 sec   (2139 perm/sec)   p_kst 1.285714e-03   p_cons 3.943381e-01   p_joint 3.816667e-03

Joint ci ratio: 9.679052e-02	ci left: 3.616019e-03	ci right 3.986065e-03	k: 1633	n:430000
Cons ci ratio: 7.409169e-03	ci left: 3.928342e-01	ci right 3.957579e-01	k: 169547	n:430000
KS ci ratio: 1.667390e-01	ci left: 1.176682e-03	ci right 1.392919e-03	k: 551	n:430000
LRBA   430000 perm   203 sec   (2123 perm/sec)   p_kst 1.281395e-03   p_cons 3.942953e-01   p_joint 3.797674e-03

Joint ci ratio: 9.603084e-02	ci left: 3.591501e-03	ci right 3.955991e-03	k: 1659	n:440000
Cons ci ratio: 7.323862e-03	ci left: 3.928919e-01	ci right 3.957822e-01	k: 173508	n:440000
KS ci ratio: 1.655446e-01	ci left: 1.167365e-03	ci right 1.380199e-03	k: 559	n:440000
LRBA   440000 perm   209 sec   (2107 perm/sec)   p_kst 1.270455e-03   p_cons 3.943364e-01   p_joint 3.770455e-03

Joint ci ratio: 1.026008e-01	ci left: 3.067394e-03	ci right 3.401275e-03	k: 1454	n:450000
Cons ci ratio: 7.240256e-03	ci left: 3.930250e-01	ci right 3.958831e-01	k: 177504	n:450000
KS ci ratio: 1.632286e-01	ci left: 1.175516e-03	ci right 1.386545e-03	k: 575	n:450000
LRBA   450000 perm   215 sec   (2090 perm/sec)   p_kst 1.277778e-03   p_cons 3.944533e-01   p_joint 3.231111e-03

Joint ci ratio: 1.022876e-01	ci left: 3.019772e-03	ci right 3.347405e-03	k: 1463	n:460000
Cons ci ratio: 7.161111e-03	ci left: 3.930416e-01	ci right 3.958684e-01	k: 181449	n:460000
KS ci ratio: 1.621076e-01	ci left: 1.166645e-03	ci right 1.374502e-03	k: 583	n:460000
LRBA   460000 perm   222 sec   (2074 perm/sec)   p_kst 1.267391e-03   p_cons 3.944543e-01   p_joint 3.180435e-03

Joint ci ratio: 1.019771e-01	ci left: 2.974177e-03	ci right 3.295826e-03	k: 1472	n:470000
Cons ci ratio: 7.085736e-03	ci left: 3.929747e-01	ci right 3.957712e-01	k: 185355	n:470000
KS ci ratio: 1.604674e-01	ci left: 1.166324e-03	ci right 1.371818e-03	k: 595	n:470000
LRBA   470000 perm   228 sec   (2058 perm/sec)   p_kst 1.265957e-03   p_cons 3.943723e-01   p_joint 3.131915e-03

Joint ci ratio: 1.017727e-01	ci left: 2.924393e-03	ci right 3.239986e-03	k: 1478	n:480000
Cons ci ratio: 7.013151e-03	ci left: 3.928796e-01	ci right 3.956467e-01	k: 189246	n:480000
KS ci ratio: 1.584851e-01	ci left: 1.172029e-03	ci right 1.375735e-03	k: 610	n:480000
LRBA   480000 perm   235 sec   (2042 perm/sec)   p_kst 1.270833e-03   p_cons 3.942625e-01   p_joint 3.079167e-03

Joint ci ratio: 1.017759e-01	ci left: 2.864707e-03	ci right 3.173869e-03	k: 1478	n:490000
Cons ci ratio: 6.940171e-03	ci left: 3.929659e-01	ci right 3.957047e-01	k: 193224	n:490000
KS ci ratio: 1.565744e-01	ci left: 1.177515e-03	ci right 1.379476e-03	k: 625	n:490000
LRBA   490000 perm   242 sec   (2027 perm/sec)   p_kst 1.275510e-03   p_cons 3.943347e-01   p_joint 3.016327e-03

Joint ci ratio: 1.006589e-01	ci left: 2.871743e-03	ci right 3.178061e-03	k: 1511	n:500000
Cons ci ratio: 6.868502e-03	ci left: 3.931129e-01	ci right 3.958243e-01	k: 197234	n:500000
KS ci ratio: 1.549735e-01	ci left: 1.178952e-03	ci right 1.378899e-03	k: 638	n:500000
LRBA   500000 perm   249 sec   (2011 perm/sec)   p_kst 1.276000e-03   p_cons 3.944680e-01   p_joint 3.022000e-03

Joint ci ratio: 8.783516e-02	ci left: 3.719276e-03	ci right 4.062868e-03	k: 1983	n:510000
Cons ci ratio: 6.800655e-03	ci left: 3.931387e-01	ci right 3.958233e-01	k: 201185	n:510000
KS ci ratio: 1.533031e-01	ci left: 1.182227e-03	ci right 1.380371e-03	k: 652	n:510000
LRBA   510000 perm   256 sec   (1995 perm/sec)   p_kst 1.278431e-03   p_cons 3.944804e-01   p_joint 3.888235e-03

Joint ci ratio: 8.707084e-02	ci left: 3.713587e-03	ci right 4.053516e-03	k: 2018	n:520000
Cons ci ratio: 6.734562e-03	ci left: 3.931789e-01	ci right 3.958376e-01	k: 205144	n:520000
KS ci ratio: 1.519137e-01	ci left: 1.181688e-03	ci right 1.377783e-03	k: 664	n:520000
LRBA   520000 perm   263 sec   (1980 perm/sec)   p_kst 1.276923e-03   p_cons 3.945077e-01   p_joint 3.880769e-03

Joint ci ratio: 8.755418e-02	ci left: 3.602907e-03	ci right 3.934629e-03	k: 1996	n:530000
Cons ci ratio: 6.669332e-03	ci left: 3.932913e-01	ci right 3.959249e-01	k: 209142	n:530000
KS ci ratio: 1.506729e-01	ci left: 1.179361e-03	ci right 1.373327e-03	k: 675	n:530000
LRBA   530000 perm   270 sec   (1964 perm/sec)   p_kst 1.273585e-03   p_cons 3.946075e-01   p_joint 3.766038e-03

Joint ci ratio: 8.671146e-02	ci left: 3.606835e-03	ci right 3.935561e-03	k: 2035	n:540000
Cons ci ratio: 6.607575e-03	ci left: 3.932831e-01	ci right 3.958921e-01	k: 213077	n:540000
KS ci ratio: 1.496803e-01	ci left: 1.173561e-03	ci right 1.365188e-03	k: 684	n:540000
LRBA   540000 perm   277 sec   (1949 perm/sec)   p_kst 1.266667e-03   p_cons 3.945870e-01   p_joint 3.768519e-03

Joint ci ratio: 8.798126e-02	ci left: 3.438092e-03	ci right 3.756263e-03	k: 1977	n:550000
Cons ci ratio: 6.547651e-03	ci left: 3.932643e-01	ci right 3.958495e-01	k: 217006	n:550000
KS ci ratio: 1.473319e-01	ci left: 1.190738e-03	ci right 1.381850e-03	k: 706	n:550000
LRBA   550000 perm   284 sec   (1935 perm/sec)   p_kst 1.283636e-03   p_cons 3.945564e-01   p_joint 3.594545e-03

Joint ci ratio: 8.693185e-02	ci left: 3.460539e-03	ci right 3.776773e-03	k: 2025	n:560000
Cons ci ratio: 6.490081e-03	ci left: 3.931910e-01	ci right 3.957529e-01	k: 220904	n:560000
KS ci ratio: 1.454907e-01	ci left: 1.200441e-03	ci right 1.390493e-03	k: 724	n:560000
LRBA   560000 perm   292 sec   (1920 perm/sec)   p_kst 1.292857e-03   p_cons 3.944714e-01   p_joint 3.616071e-03

Joint ci ratio: 8.600238e-02	ci left: 3.475353e-03	ci right 3.789375e-03	k: 2069	n:570000
Cons ci ratio: 6.432018e-03	ci left: 3.932677e-01	ci right 3.958071e-01	k: 224886	n:570000
KS ci ratio: 1.442036e-01	ci left: 1.201361e-03	ci right 1.389732e-03	k: 737	n:570000
LRBA   570000 perm   299 sec   (1906 perm/sec)   p_kst 1.292982e-03   p_cons 3.945368e-01   p_joint 3.629825e-03

Joint ci ratio: 8.739298e-02	ci left: 3.305781e-03	ci right 3.609557e-03	k: 2004	n:580000
Cons ci ratio: 6.376567e-03	ci left: 3.932608e-01	ci right 3.957782e-01	k: 228821	n:580000
KS ci ratio: 1.434289e-01	ci left: 1.193944e-03	ci right 1.380060e-03	k: 745	n:580000
LRBA   580000 perm   307 sec   (1892 perm/sec)   p_kst 1.284483e-03   p_cons 3.945190e-01   p_joint 3.455172e-03

Joint ci ratio: 8.664001e-02	ci left: 3.307782e-03	ci right 3.608990e-03	k: 2039	n:590000
Cons ci ratio: 6.322998e-03	ci left: 3.932187e-01	ci right 3.957146e-01	k: 232735	n:590000
KS ci ratio: 1.421953e-01	ci left: 1.194954e-03	ci right 1.379490e-03	k: 758	n:590000
LRBA   590000 perm   314 sec   (1879 perm/sec)   p_kst 1.284746e-03   p_cons 3.944661e-01   p_joint 3.455932e-03

Joint ci ratio: 8.603108e-02	ci left: 3.299942e-03	ci right 3.598218e-03	k: 2068	n:600000
Cons ci ratio: 6.271521e-03	ci left: 3.931198e-01	ci right 3.955946e-01	k: 236614	n:600000
KS ci ratio: 1.412681e-01	ci left: 1.191114e-03	ci right 1.373756e-03	k: 768	n:600000
LRBA   600000 perm   322 sec   (1866 perm/sec)   p_kst 1.280000e-03   p_cons 3.943567e-01   p_joint 3.446667e-03

Joint ci ratio: 8.521094e-02	ci left: 3.310015e-03	ci right 3.606207e-03	k: 2108	n:610000
Cons ci ratio: 6.217739e-03	ci left: 3.932961e-01	ci right 3.957508e-01	k: 240659	n:610000
KS ci ratio: 1.400889e-01	ci left: 1.192149e-03	ci right 1.373297e-03	k: 781	n:610000
LRBA   610000 perm   329 sec   (1853 perm/sec)   p_kst 1.280328e-03   p_cons 3.945230e-01   p_joint 3.455738e-03

Joint ci ratio: 8.453232e-02	ci left: 3.310302e-03	ci right 3.604045e-03	k: 2142	n:620000
Cons ci ratio: 6.166419e-03	ci left: 3.933815e-01	ci right 3.958163e-01	k: 244651	n:620000
KS ci ratio: 1.390264e-01	ci left: 1.191600e-03	ci right 1.371177e-03	k: 793	n:620000
LRBA   620000 perm   337 sec   (1840 perm/sec)   p_kst 1.279032e-03   p_cons 3.945984e-01   p_joint 3.454839e-03

Joint ci ratio: 8.392770e-02	ci left: 3.305927e-03	ci right 3.597081e-03	k: 2173	n:630000
Cons ci ratio: 6.115109e-03	ci left: 3.935609e-01	ci right 3.959765e-01	k: 248704	n:630000
KS ci ratio: 1.380734e-01	ci left: 1.189540e-03	ci right 1.367477e-03	k: 804	n:630000
LRBA   630000 perm   345 sec   (1827 perm/sec)   p_kst 1.276190e-03   p_cons 3.947683e-01   p_joint 3.449206e-03

Joint ci ratio: 8.998752e-02	ci left: 2.823185e-03	ci right 3.090720e-03	k: 1891	n:640000
Cons ci ratio: 6.064642e-03	ci left: 3.937677e-01	ci right 3.961645e-01	k: 252778	n:640000
KS ci ratio: 1.370558e-01	ci left: 1.189059e-03	ci right 1.365506e-03	k: 816	n:640000
LRBA   640000 perm   353 sec   (1814 perm/sec)   p_kst 1.275000e-03   p_cons 3.949656e-01   p_joint 2.954687e-03

Joint ci ratio: 9.020500e-02	ci left: 2.766214e-03	ci right 3.029017e-03	k: 1882	n:650000
Cons ci ratio: 6.017784e-03	ci left: 3.937790e-01	ci right 3.961573e-01	k: 256729	n:650000
KS ci ratio: 1.359782e-01	ci left: 1.190082e-03	ci right 1.365180e-03	k: 829	n:650000
LRBA   650000 perm   361 sec   (1803 perm/sec)   p_kst 1.275385e-03   p_cons 3.949677e-01   p_joint 2.895385e-03

Joint ci ratio: 9.042396e-02	ci left: 2.710969e-03	ci right 2.969183e-03	k: 1873	n:660000
Cons ci ratio: 5.971560e-03	ci left: 3.938249e-01	ci right 3.961851e-01	k: 260703	n:660000
KS ci ratio: 1.350862e-01	ci left: 1.188152e-03	ci right 1.361727e-03	k: 840	n:660000
LRBA   660000 perm   369 sec   (1791 perm/sec)   p_kst 1.272727e-03   p_cons 3.950045e-01   p_joint 2.837879e-03

Joint ci ratio: 8.952024e-02	ci left: 2.725948e-03	ci right 2.982858e-03	k: 1911	n:670000
Cons ci ratio: 5.926775e-03	ci left: 3.938381e-01	ci right 3.961807e-01	k: 264656	n:670000
KS ci ratio: 1.335850e-01	ci left: 1.197824e-03	ci right 1.370713e-03	k: 859	n:670000
LRBA   670000 perm   377 sec   (1779 perm/sec)   p_kst 1.282090e-03   p_cons 3.950090e-01   p_joint 2.852239e-03

Joint ci ratio: 8.905624e-02	ci left: 2.714615e-03	ci right 2.969061e-03	k: 1931	n:680000
Cons ci ratio: 5.882710e-03	ci left: 3.938731e-01	ci right 3.961984e-01	k: 268624	n:680000
KS ci ratio: 1.331991e-01	ci left: 1.187316e-03	ci right 1.358154e-03	k: 864	n:680000
LRBA   680000 perm   385 sec   (1766 perm/sec)   p_kst 1.270588e-03   p_cons 3.950353e-01   p_joint 2.839706e-03

Joint ci ratio: 8.853118e-02	ci left: 2.707866e-03	ci right 2.960105e-03	k: 1954	n:690000
Cons ci ratio: 5.840889e-03	ci left: 3.938028e-01	ci right 3.961111e-01	k: 272520	n:690000
KS ci ratio: 1.322848e-01	ci left: 1.186923e-03	ci right 1.356440e-03	k: 876	n:690000
LRBA   690000 perm   393 sec   (1754 perm/sec)   p_kst 1.269565e-03   p_cons 3.949565e-01   p_joint 2.831884e-03

Joint ci ratio: 8.783734e-02	ci left: 2.712491e-03	ci right 2.963080e-03	k: 1985	n:700000
Cons ci ratio: 5.799150e-03	ci left: 3.938003e-01	ci right 3.960920e-01	k: 276462	n:700000
KS ci ratio: 1.307281e-01	ci left: 1.198980e-03	ci right 1.368048e-03	k: 897	n:700000
LRBA   700000 perm   402 sec   (1742 perm/sec)   p_kst 1.281429e-03   p_cons 3.949457e-01   p_joint 2.835714e-03

Joint ci ratio: 8.842141e-02	ci left: 2.638470e-03	ci right 2.883925e-03	k: 1959	n:710000
Cons ci ratio: 5.757546e-03	ci left: 3.938598e-01	ci right 3.961354e-01	k: 280448	n:710000
KS ci ratio: 1.299348e-01	ci left: 1.197081e-03	ci right 1.364777e-03	k: 908	n:710000
LRBA   710000 perm   410 sec   (1731 perm/sec)   p_kst 1.278873e-03   p_cons 3.949972e-01   p_joint 2.759155e-03

Joint ci ratio: 8.869579e-02	ci left: 2.585524e-03	ci right 2.826838e-03	k: 1947	n:720000
Cons ci ratio: 5.717456e-03	ci left: 3.938650e-01	ci right 3.961247e-01	k: 284396	n:720000
KS ci ratio: 1.289456e-01	ci left: 1.199269e-03	ci right 1.365896e-03	k: 922	n:720000
LRBA   720000 perm   419 sec   (1719 perm/sec)   p_kst 1.280556e-03   p_cons 3.949944e-01   p_joint 2.704167e-03

Joint ci ratio: 8.927366e-02	ci left: 2.516617e-03	ci right 2.753110e-03	k: 1922	n:730000
Cons ci ratio: 5.678746e-03	ci left: 3.938236e-01	ci right 3.960677e-01	k: 288310	n:730000
KS ci ratio: 1.283908e-01	ci left: 1.193447e-03	ci right 1.358497e-03	k: 930	n:730000
LRBA   730000 perm   427 sec   (1708 perm/sec)   p_kst 1.273973e-03   p_cons 3.949452e-01   p_joint 2.632877e-03

Joint ci ratio: 8.788848e-02	ci left: 2.563218e-03	ci right 2.800161e-03	k: 1983	n:740000
Cons ci ratio: 5.640284e-03	ci left: 3.938279e-01	ci right 3.960568e-01	k: 292257	n:740000
KS ci ratio: 1.224750e-01	ci left: 1.297749e-03	ci right 1.468355e-03	k: 1022	n:740000
LRBA   740000 perm   436 sec   (1698 perm/sec)   p_kst 1.381081e-03   p_cons 3.949419e-01   p_joint 2.679730e-03

Joint ci ratio: 8.773501e-02	ci left: 2.538169e-03	ci right 2.772365e-03	k: 1990	n:750000
Cons ci ratio: 5.601813e-03	ci left: 3.938987e-01	ci right 3.961128e-01	k: 296254	n:750000
KS ci ratio: 1.215868e-01	ci left: 1.299835e-03	ci right 1.469387e-03	k: 1037	n:750000
LRBA   750000 perm   445 sec   (1687 perm/sec)   p_kst 1.382667e-03   p_cons 3.950053e-01   p_joint 2.653333e-03

Joint ci ratio: 9.162480e-02	ci left: 2.292520e-03	ci right 2.513932e-03	k: 1825	n:760000
Cons ci ratio: 5.564700e-03	ci left: 3.939178e-01	ci right 3.961172e-01	k: 300213	n:760000
KS ci ratio: 1.205457e-01	ci left: 1.305699e-03	ci right 1.474454e-03	k: 1055	n:760000
LRBA   760000 perm   453 sec   (1676 perm/sec)   p_kst 1.388158e-03   p_cons 3.950171e-01   p_joint 2.401316e-03

Joint ci ratio: 9.160110e-02	ci left: 2.264014e-03	ci right 2.482613e-03	k: 1826	n:770000
Cons ci ratio: 5.528555e-03	ci left: 3.939156e-01	ci right 3.961007e-01	k: 304156	n:770000
KS ci ratio: 1.202621e-01	ci left: 1.295040e-03	ci right 1.461994e-03	k: 1060	n:770000
LRBA   770000 perm   462 sec   (1666 perm/sec)   p_kst 1.376623e-03   p_cons 3.950078e-01   p_joint 2.371429e-03

Joint ci ratio: 9.145210e-02	ci left: 2.242504e-03	ci right 2.458654e-03	k: 1832	n:780000
Cons ci ratio: 5.493312e-03	ci left: 3.938957e-01	ci right 3.960667e-01	k: 308085	n:780000
KS ci ratio: 1.188142e-01	ci left: 1.310774e-03	ci right 1.477580e-03	k: 1086	n:780000
LRBA   780000 perm   471 sec   (1655 perm/sec)   p_kst 1.392308e-03   p_cons 3.949808e-01   p_joint 2.348718e-03

Joint ci ratio: 9.234134e-02	ci left: 2.170828e-03	ci right 2.382215e-03	k: 1797	n:790000
Cons ci ratio: 5.459487e-03	ci left: 3.938104e-01	ci right 3.959676e-01	k: 311962	n:790000
KS ci ratio: 1.182177e-01	ci left: 1.307693e-03	ci right 1.473213e-03	k: 1097	n:790000
LRBA   790000 perm   480 sec   (1646 perm/sec)   p_kst 1.388608e-03   p_cons 3.948886e-01   p_joint 2.274684e-03

Joint ci ratio: 9.216302e-02	ci left: 2.152240e-03	ci right 2.361390e-03	k: 1804	n:800000
Cons ci ratio: 5.425526e-03	ci left: 3.937936e-01	ci right 3.959372e-01	k: 315892	n:800000
KS ci ratio: 1.177365e-01	ci left: 1.302265e-03	ci right 1.466380e-03	k: 1106	n:800000
LRBA   800000 perm   489 sec   (1636 perm/sec)   p_kst 1.382500e-03   p_cons 3.948650e-01   p_joint 2.255000e-03

Joint ci ratio: 9.145609e-02	ci left: 2.159444e-03	ci right 2.367598e-03	k: 1832	n:810000
Cons ci ratio: 5.391411e-03	ci left: 3.938463e-01	ci right 3.959766e-01	k: 319878	n:810000
KS ci ratio: 1.172086e-01	ci left: 1.298170e-03	ci right 1.460985e-03	k: 1116	n:810000
LRBA   810000 perm   498 sec   (1625 perm/sec)   p_kst 1.377778e-03   p_cons 3.949111e-01   p_joint 2.261728e-03

Joint ci ratio: 9.175887e-02	ci left: 2.118808e-03	ci right 2.323758e-03	k: 1820	n:820000
Cons ci ratio: 5.357699e-03	ci left: 3.939185e-01	ci right 3.960359e-01	k: 323881	n:820000
KS ci ratio: 1.168436e-01	ci left: 1.290625e-03	ci right 1.451955e-03	k: 1123	n:820000
LRBA   820000 perm   508 sec   (1615 perm/sec)   p_kst 1.369512e-03   p_cons 3.949768e-01   p_joint 2.219512e-03

Joint ci ratio: 1.013596e-01	ci left: 1.707600e-03	ci right 1.891085e-03	k: 1492	n:830000
Cons ci ratio: 5.325685e-03	ci left: 3.938927e-01	ci right 3.959972e-01	k: 327804	n:830000
KS ci ratio: 1.161737e-01	ci left: 1.290282e-03	ci right 1.450580e-03	k: 1136	n:830000
LRBA   830000 perm   517 sec   (1606 perm/sec)   p_kst 1.368675e-03   p_cons 3.949446e-01   p_joint 1.797590e-03

Joint ci ratio: 1.013947e-01	ci left: 1.686110e-03	ci right 1.867353e-03	k: 1491	n:840000
Cons ci ratio: 5.293975e-03	ci left: 3.938913e-01	ci right 3.959832e-01	k: 331747	n:840000
KS ci ratio: 1.155153e-01	ci left: 1.289949e-03	ci right 1.449236e-03	k: 1149	n:840000
LRBA   840000 perm   526 sec   (1596 perm/sec)   p_kst 1.367857e-03   p_cons 3.949369e-01   p_joint 1.775000e-03

Joint ci ratio: 1.009226e-01	ci left: 1.682328e-03	ci right 1.862271e-03	k: 1505	n:850000
Cons ci ratio: 5.263252e-03	ci left: 3.938512e-01	ci right 3.959307e-01	k: 335657	n:850000
KS ci ratio: 1.150165e-01	ci left: 1.286198e-03	ci right 1.444290e-03	k: 1159	n:850000
LRBA   850000 perm   536 sec   (1587 perm/sec)   p_kst 1.363529e-03   p_cons 3.948906e-01   p_joint 1.770588e-03

Joint ci ratio: 1.029285e-01	ci left: 1.597039e-03	ci right 1.771461e-03	k: 1447	n:860000
Cons ci ratio: 5.232154e-03	ci left: 3.938945e-01	ci right 3.959620e-01	k: 339638	n:860000
KS ci ratio: 1.146223e-01	ci left: 1.280278e-03	ci right 1.437065e-03	k: 1167	n:860000
LRBA   860000 perm   545 sec   (1578 perm/sec)   p_kst 1.356977e-03   p_cons 3.949279e-01   p_joint 1.682558e-03

Joint ci ratio: 1.046820e-01	ci left: 1.524939e-03	ci right 1.694499e-03	k: 1399	n:870000
Cons ci ratio: 5.202188e-03	ci left: 3.938829e-01	ci right 3.959385e-01	k: 343572	n:870000
KS ci ratio: 1.137970e-01	ci left: 1.284544e-03	ci right 1.440645e-03	k: 1184	n:870000
LRBA   870000 perm   554 sec   (1569 perm/sec)   p_kst 1.360920e-03   p_cons 3.949103e-01   p_joint 1.608046e-03

Joint ci ratio: 1.039420e-01	ci left: 1.529745e-03	ci right 1.698563e-03	k: 1419	n:880000
Cons ci ratio: 5.172142e-03	ci left: 3.939262e-01	ci right 3.959700e-01	k: 347554	n:880000
KS ci ratio: 1.132252e-01	ci left: 1.283196e-03	ci right 1.438298e-03	k: 1196	n:880000
LRBA   880000 perm   564 sec   (1560 perm/sec)   p_kst 1.359091e-03   p_cons 3.949477e-01   p_joint 1.612500e-03

Joint ci ratio: 1.035058e-01	ci left: 1.525690e-03	ci right 1.693311e-03	k: 1431	n:890000
Cons ci ratio: 5.143081e-03	ci left: 3.939246e-01	ci right 3.959569e-01	k: 351497	n:890000
KS ci ratio: 1.124294e-01	ci left: 1.287340e-03	ci right 1.441777e-03	k: 1213	n:890000
LRBA   890000 perm   574 sec   (1551 perm/sec)   p_kst 1.362921e-03   p_cons 3.949404e-01   p_joint 1.607865e-03

Joint ci ratio: 8.509695e-02	ci left: 2.252102e-03	ci right 2.453344e-03	k: 2116	n:900000
Cons ci ratio: 5.115647e-03	ci left: 3.938166e-01	ci right 3.958374e-01	k: 355344	n:900000
KS ci ratio: 1.116502e-01	ci left: 1.291396e-03	ci right 1.445175e-03	k: 1230	n:900000
LRBA   900000 perm   584 sec   (1541 perm/sec)   p_kst 1.366667e-03   p_cons 3.948267e-01   p_joint 2.351111e-03

Joint ci ratio: 8.633309e-02	ci left: 2.162829e-03	ci right 2.359042e-03	k: 2056	n:910000
Cons ci ratio: 5.088154e-03	ci left: 3.937570e-01	ci right 3.957667e-01	k: 359233	n:910000
KS ci ratio: 1.111549e-01	ci left: 1.288956e-03	ci right 1.441719e-03	k: 1241	n:910000
LRBA   910000 perm   594 sec   (1532 perm/sec)   p_kst 1.363736e-03   p_cons 3.947615e-01   p_joint 2.259341e-03

Joint ci ratio: 8.585442e-02	ci left: 2.163781e-03	ci right 2.358939e-03	k: 2079	n:920000
Cons ci ratio: 5.060917e-03	ci left: 3.937162e-01	ci right 3.957149e-01	k: 363138	n:920000
KS ci ratio: 1.106218e-01	ci left: 1.287627e-03	ci right 1.439453e-03	k: 1253	n:920000
LRBA   920000 perm   604 sec   (1523 perm/sec)   p_kst 1.361957e-03   p_cons 3.947152e-01   p_joint 2.259783e-03

Joint ci ratio: 8.546513e-02	ci left: 2.160507e-03	ci right 2.354442e-03	k: 2098	n:930000
Cons ci ratio: 5.033364e-03	ci left: 3.937472e-01	ci right 3.957351e-01	k: 367109	n:930000
KS ci ratio: 1.101836e-01	ci left: 1.284237e-03	ci right 1.435025e-03	k: 1263	n:930000
LRBA   930000 perm   614 sec   (1515 perm/sec)   p_kst 1.358065e-03   p_cons 3.947409e-01   p_joint 2.255914e-03

Joint ci ratio: 8.506096e-02	ci left: 2.158346e-03	ci right 2.351125e-03	k: 2118	n:940000
Cons ci ratio: 5.007638e-03	ci left: 3.936458e-01	ci right 3.956230e-01	k: 370956	n:940000
KS ci ratio: 1.098369e-01	ci left: 1.278852e-03	ci right 1.428503e-03	k: 1271	n:940000
LRBA   940000 perm   624 sec   (1506 perm/sec)   p_kst 1.352128e-03   p_cons 3.946340e-01   p_joint 2.253191e-03

Joint ci ratio: 8.522336e-02	ci left: 2.127383e-03	ci right 2.317777e-03	k: 2110	n:950000
Cons ci ratio: 4.980591e-03	ci left: 3.937106e-01	ci right 3.956774e-01	k: 374959	n:950000
KS ci ratio: 1.091949e-01	ci left: 1.280747e-03	ci right 1.429688e-03	k: 1286	n:950000
LRBA   950000 perm   634 sec   (1498 perm/sec)   p_kst 1.353684e-03   p_cons 3.946937e-01   p_joint 2.221053e-03

Joint ci ratio: 8.550899e-02	ci left: 2.090949e-03	ci right 2.278741e-03	k: 2096	n:960000
Cons ci ratio: 4.954107e-03	ci left: 3.937616e-01	ci right 3.957182e-01	k: 378950	n:960000
KS ci ratio: 1.086894e-01	ci left: 1.279565e-03	ci right 1.427636e-03	k: 1298	n:960000
LRBA   960000 perm   645 sec   (1489 perm/sec)   p_kst 1.352083e-03   p_cons 3.947396e-01   p_joint 2.183333e-03

Joint ci ratio: 8.516469e-02	ci left: 2.086545e-03	ci right 2.273149e-03	k: 2113	n:970000
Cons ci ratio: 4.928019e-03	ci left: 3.938137e-01	ci right 3.957602e-01	k: 382943	n:970000
KS ci ratio: 1.081909e-01	ci left: 1.278409e-03	ci right 1.425625e-03	k: 1310	n:970000
LRBA   970000 perm   655 sec   (1481 perm/sec)   p_kst 1.350515e-03   p_cons 3.947866e-01   p_joint 2.178351e-03

Joint ci ratio: 8.470510e-02	ci left: 2.088225e-03	ci right 2.273921e-03	k: 2136	n:980000
Cons ci ratio: 4.903219e-03	ci left: 3.937790e-01	ci right 3.957155e-01	k: 386852	n:980000
KS ci ratio: 1.077400e-01	ci left: 1.276286e-03	ci right 1.422605e-03	k: 1321	n:980000
LRBA   980000 perm   666 sec   (1472 perm/sec)   p_kst 1.347959e-03   p_cons 3.947469e-01   p_joint 2.179592e-03

Joint ci ratio: 8.433116e-02	ci left: 2.085918e-03	ci right 2.270550e-03	k: 2155	n:990000
Cons ci ratio: 4.878727e-03	ci left: 3.937511e-01	ci right 3.956778e-01	k: 390767	n:990000
KS ci ratio: 1.072544e-01	ci left: 1.275189e-03	ci right 1.420683e-03	k: 1333	n:990000
LRBA   990000 perm   676 sec   (1465 perm/sec)   p_kst 1.346465e-03   p_cons 3.947141e-01   p_joint 2.176768e-03

Joint ci ratio: 8.384630e-02	ci left: 2.089533e-03	ci right 2.273370e-03	k: 2180	n:1000000
Cons ci ratio: 4.853380e-03	ci left: 3.938438e-01	ci right 3.957608e-01	k: 394802	n:1000000
KS ci ratio: 1.066960e-01	ci left: 1.276063e-03	ci right 1.420850e-03	k: 1347	n:1000000
LRBA   1000000 perm   686 sec   (1457 perm/sec)   p_kst 1.347000e-03   p_cons 3.948020e-01   p_joint 2.180000e-03

Joint ci ratio: 8.357881e-02	ci left: 2.082415e-03	ci right 2.265013e-03	k: 2194	n:1010000
Cons ci ratio: 4.828994e-03	ci left: 3.938782e-01	ci right 3.957858e-01	k: 398780	n:1010000
KS ci ratio: 1.063026e-01	ci left: 1.273066e-03	ci right 1.416947e-03	k: 1357	n:1010000
LRBA   1010000 perm   697 sec   (1449 perm/sec)   p_kst 1.343564e-03   p_cons 3.948317e-01   p_joint 2.172277e-03

Joint ci ratio: 8.365612e-02	ci left: 2.058159e-03	ci right 2.238805e-03	k: 2190	n:1020000
Cons ci ratio: 4.805454e-03	ci left: 3.938639e-01	ci right 3.957621e-01	k: 402709	n:1020000
KS ci ratio: 1.058748e-01	ci left: 1.271083e-03	ci right 1.414126e-03	k: 1368	n:1020000
LRBA   1020000 perm   708 sec   (1441 perm/sec)   p_kst 1.341176e-03   p_cons 3.948127e-01   p_joint 2.147059e-03

Joint ci ratio: 8.388752e-02	ci left: 2.026769e-03	ci right 2.205176e-03	k: 2178	n:1030000
Cons ci ratio: 4.782285e-03	ci left: 3.938471e-01	ci right 3.957360e-01	k: 406635	n:1030000
KS ci ratio: 1.053757e-01	ci left: 1.271030e-03	ci right 1.413351e-03	k: 1381	n:1030000
LRBA   1030000 perm   722 sec   (1426 perm/sec)   p_kst 1.340777e-03   p_cons 3.947913e-01   p_joint 2.114563e-03

Joint ci ratio: 8.361962e-02	ci left: 2.020460e-03	ci right 2.197716e-03	k: 2192	n:1040000
Cons ci ratio: 4.758883e-03	ci left: 3.938873e-01	ci right 3.957671e-01	k: 410620	n:1040000
KS ci ratio: 1.050344e-01	ci left: 1.267235e-03	ci right 1.408643e-03	k: 1390	n:1040000
LRBA   1040000 perm   740 sec   (1405 perm/sec)   p_kst 1.336538e-03   p_cons 3.948269e-01   p_joint 2.107692e-03

Joint ci ratio: 8.350606e-02	ci left: 2.006812e-03	ci right 2.182620e-03	k: 2198	n:1050000
Cons ci ratio: 4.736075e-03	ci left: 3.939010e-01	ci right 3.957719e-01	k: 414578	n:1050000
KS ci ratio: 1.045470e-01	ci left: 1.267222e-03	ci right 1.407933e-03	k: 1403	n:1050000
LRBA   1050000 perm   756 sec   (1389 perm/sec)   p_kst 1.336190e-03   p_cons 3.948362e-01   p_joint 2.093333e-03

Joint ci ratio: 8.337402e-02	ci left: 1.994345e-03	ci right 2.168771e-03	k: 2205	n:1060000
Cons ci ratio: 4.713844e-03	ci left: 3.938891e-01	ci right 3.957511e-01	k: 418509	n:1060000
KS ci ratio: 1.040664e-01	ci left: 1.267211e-03	ci right 1.407234e-03	k: 1416	n:1060000
LRBA   1060000 perm   769 sec   (1378 perm/sec)   p_kst 1.335849e-03   p_cons 3.948198e-01   p_joint 2.080189e-03

Joint ci ratio: 8.288679e-02	ci left: 1.999500e-03	ci right 2.173306e-03	k: 2231	n:1070000
Cons ci ratio: 4.691914e-03	ci left: 3.938783e-01	ci right 3.957316e-01	k: 422441	n:1070000
KS ci ratio: 1.034837e-01	ci left: 1.269934e-03	ci right 1.409424e-03	k: 1432	n:1070000
LRBA   1070000 perm   781 sec   (1371 perm/sec)   p_kst 1.338318e-03   p_cons 3.948047e-01   p_joint 2.085047e-03

Joint ci ratio: 8.249959e-02	ci left: 2.000029e-03	ci right 2.173029e-03	k: 2252	n:1080000
Cons ci ratio: 4.670187e-03	ci left: 3.938779e-01	ci right 3.957226e-01	k: 426384	n:1080000
KS ci ratio: 1.031246e-01	ci left: 1.267195e-03	ci right 1.405872e-03	k: 1442	n:1080000
LRBA   1080000 perm   792 sec   (1364 perm/sec)   p_kst 1.335185e-03   p_cons 3.948000e-01   p_joint 2.085185e-03

Joint ci ratio: 8.242709e-02	ci left: 1.985274e-03	ci right 2.156839e-03	k: 2256	n:1090000
Cons ci ratio: 4.647903e-03	ci left: 3.939656e-01	ci right 3.958019e-01	k: 430423	n:1090000
KS ci ratio: 1.024170e-01	ci left: 1.273447e-03	ci right 1.411794e-03	k: 1462	n:1090000
LRBA   1090000 perm   803 sec   (1357 perm/sec)   p_kst 1.341284e-03   p_cons 3.948835e-01   p_joint 2.069725e-03

Joint ci ratio: 7.821681e-02	ci left: 2.189054e-03	ci right 2.368128e-03	k: 2505	n:1100000
Cons ci ratio: 4.626823e-03	ci left: 3.939600e-01	ci right 3.957879e-01	k: 434361	n:1100000
KS ci ratio: 1.018959e-01	ci left: 1.275158e-03	ci right 1.412944e-03	k: 1477	n:1100000
LRBA   1100000 perm   815 sec   (1350 perm/sec)   p_kst 1.342727e-03   p_cons 3.948736e-01   p_joint 2.277273e-03

Joint ci ratio: 7.834304e-02	ci left: 2.162266e-03	ci right 2.339447e-03	k: 2497	n:1110000
Cons ci ratio: 4.604743e-03	ci left: 3.940877e-01	ci right 3.959074e-01	k: 438447	n:1110000
KS ci ratio: 1.014848e-01	ci left: 1.274206e-03	ci right 1.411300e-03	k: 1489	n:1110000
LRBA   1110000 perm   826 sec   (1344 perm/sec)   p_kst 1.341441e-03   p_cons 3.949973e-01   p_joint 2.249550e-03

Joint ci ratio: 7.803138e-02	ci left: 2.160468e-03	ci right 2.336765e-03	k: 2517	n:1120000
Cons ci ratio: 4.584191e-03	ci left: 3.940864e-01	ci right 3.958980e-01	k: 442391	n:1120000
KS ci ratio: 1.010787e-01	ci left: 1.273272e-03	ci right 1.409685e-03	k: 1501	n:1120000
LRBA   1120000 perm   838 sec   (1337 perm/sec)   p_kst 1.340179e-03   p_cons 3.949920e-01   p_joint 2.247321e-03

Joint ci ratio: 7.840755e-02	ci left: 2.120523e-03	ci right 2.294433e-03	k: 2493	n:1130000
Cons ci ratio: 4.563946e-03	ci left: 3.940817e-01	ci right 3.958852e-01	k: 446331	n:1130000
KS ci ratio: 1.005444e-01	ci left: 1.275806e-03	ci right 1.411726e-03	k: 1517	n:1130000
LRBA   1130000 perm   849 sec   (1330 perm/sec)   p_kst 1.342478e-03   p_cons 3.949832e-01   p_joint 2.206195e-03

Joint ci ratio: 7.855048e-02	ci left: 2.094181e-03	ci right 2.266258e-03	k: 2484	n:1140000
Cons ci ratio: 4.543350e-03	ci left: 3.941419e-01	ci right 3.959376e-01	k: 450345	n:1140000
KS ci ratio: 9.998598e-02	ci left: 1.279153e-03	ci right 1.414629e-03	k: 1534	n:1140000
LRBA   1140000 perm   861 sec   (1324 perm/sec)   p_kst 1.345614e-03   p_cons 3.950395e-01   p_joint 2.178947e-03

Outputting figure to mutsig2_images.part000000000098/LRBA.10_8820_1140000_0.0013456_0.39504_0.0021789.png
                gene_name: LRBA
               theta_stop: 0.100 
                    nperm: 1140000 
                     p_ks: 0.0013 
        ci_ks_bounds_left: 0.0013 
       ci_ks_bounds_right: 0.0014 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.0022 
     ci_joint_bounds_left: 0.0021 
    ci_joint_bounds_right: 0.0023 

Current progress: 12 percent done.
LRP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.206323e-02	ci left: 5.894169e-01	ci right 6.087254e-01	k: 5991	n:10000
Cons ci ratio: 4.013009e-02	ci left: 4.783575e-01	ci right 4.980493e-01	k: 4882	n:10000
KS ci ratio: 3.808897e-02	ci left: 5.044512e-01	ci right 5.241404e-01	k: 5143	n:10000
LRP4   10000 perm   2 sec   (4308 perm/sec)   p_kst 5.143000e-01   p_cons 4.882000e-01   p_joint 5.991000e-01

Outputting figure to mutsig2_images.part000000000098/LRP4.9_5870_10000_0.5143_0.4882_0.5991.png
                gene_name: LRP4
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 14 percent done.
LPHN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.796730e-02	ci left: 3.046112e-01	ci right 3.228974e-01	k: 3137	n:10000
Cons ci ratio: 2.591782e-02	ci left: 6.866768e-01	ci right 7.048091e-01	k: 6958	n:10000
KS ci ratio: 7.827576e-02	ci left: 1.925924e-01	ci right 2.083825e-01	k: 2004	n:10000
LPHN2   10000 perm   2 sec   (4766 perm/sec)   p_kst 2.004000e-01   p_cons 6.958000e-01   p_joint 3.137000e-01

Outputting figure to mutsig2_images.part000000000098/LPHN2.7_4288_10000_0.2004_0.6958_0.3137.png
                gene_name: LPHN2
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 16 percent done.
LPIN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.183805e-02	ci left: 4.575817e-01	ci right 4.772373e-01	k: 4674	n:10000
Cons ci ratio: 6.529986e-02	ci left: 2.561716e-01	ci right 2.735656e-01	k: 2648	n:10000
KS ci ratio: 3.977843e-02	ci left: 4.827546e-01	ci right 5.024497e-01	k: 4926	n:10000
LPIN2   10000 perm   2 sec   (5263 perm/sec)   p_kst 4.926000e-01   p_cons 2.648000e-01   p_joint 4.674000e-01

Outputting figure to mutsig2_images.part000000000098/LPIN2.7_2767_10000_0.4926_0.2648_0.4674.png
                gene_name: LPIN2
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 17 percent done.
LRFN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.042826e-01	ci left: 1.173073e-01	ci right 1.303127e-01	k: 1237	n:10000
Cons ci ratio: 2.624881e-02	ci left: 6.812340e-01	ci right 6.994550e-01	k: 6904	n:10000
KS ci ratio: 1.769032e-01	ci left: 4.264711e-02	ci right 5.101943e-02	k: 467	n:10000
LRFN2   10000 perm   2 sec   (4833 perm/sec)   p_kst 4.670000e-02   p_cons 6.904000e-01   p_joint 1.237000e-01

Joint ci ratio: 8.024300e-02	ci left: 1.023063e-01	ci right 1.109084e-01	k: 2131	n:20000
Cons ci ratio: 1.901197e-02	ci left: 6.735345e-01	ci right 6.865131e-01	k: 13601	n:20000
KS ci ratio: 1.223735e-01	ci left: 4.580631e-02	ci right 5.182574e-02	k: 975	n:20000
LRFN2   20000 perm   5 sec   (4400 perm/sec)   p_kst 4.875000e-02   p_cons 6.800500e-01   p_joint 1.065500e-01

Joint ci ratio: 5.949810e-02	ci left: 1.226265e-01	ci right 1.301794e-01	k: 3791	n:30000
Cons ci ratio: 1.552754e-02	ci left: 6.746206e-01	ci right 6.852112e-01	k: 20398	n:30000
KS ci ratio: 9.920791e-02	ci left: 4.700745e-02	ci right 5.194694e-02	k: 1483	n:30000
LRFN2   30000 perm   7 sec   (4231 perm/sec)   p_kst 4.943333e-02   p_cons 6.799333e-01   p_joint 1.263667e-01

Outputting figure to mutsig2_images.part000000000098/LRFN2.7_2378_30000_0.049433_0.67993_0.12637.png
                gene_name: LRFN2
               theta_stop: 0.099 
                    nperm: 30000 
                     p_ks: 0.049 
        ci_ks_bounds_left: 0.047 
       ci_ks_bounds_right: 0.052 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 19 percent done.
LPAR4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.758897e-02	ci left: 5.110539e-01	ci right 5.307340e-01	k: 5209	n:10000
Cons ci ratio: 7.033410e-02	ci left: 2.285942e-01	ci right 2.453593e-01	k: 2369	n:10000
KS ci ratio: 1.399478e-02	ci left: 8.806319e-01	ci right 8.931418e-01	k: 8870	n:10000
LPAR4   10000 perm   2 sec   (5539 perm/sec)   p_kst 8.870000e-01   p_cons 2.369000e-01   p_joint 5.209000e-01

Outputting figure to mutsig2_images.part000000000098/LPAR4.6_1117_10000_0.887_0.2369_0.5209.png
                gene_name: LPAR4
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 21 percent done.
LPPR4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.714316e-02	ci left: 3.107615e-01	ci right 3.291435e-01	k: 3199	n:10000
Cons ci ratio: 3.437765e-02	ci left: 5.554160e-01	ci right 5.749460e-01	k: 5652	n:10000
KS ci ratio: 6.589183e-02	ci left: 2.527095e-01	ci right 2.700297e-01	k: 2613	n:10000
LPPR4   10000 perm   2 sec   (5304 perm/sec)   p_kst 2.613000e-01   p_cons 5.652000e-01   p_joint 3.199000e-01

Outputting figure to mutsig2_images.part000000000098/LPPR4.6_2320_10000_0.2613_0.5652_0.3199.png
                gene_name: LPPR4
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 22 percent done.
LRIT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.624069e-02	ci left: 5.292700e-01	ci right 5.489072e-01	k: 5391	n:10000
Cons ci ratio: 3.726648e-02	ci left: 5.153565e-01	ci right 5.350288e-01	k: 5252	n:10000
KS ci ratio: 4.193901e-02	ci left: 4.563836e-01	ci right 4.760361e-01	k: 4662	n:10000
LRIT1   10000 perm   2 sec   (5935 perm/sec)   p_kst 4.662000e-01   p_cons 5.252000e-01   p_joint 5.391000e-01

Outputting figure to mutsig2_images.part000000000098/LRIT1.6_1888_10000_0.4662_0.5252_0.5391.png
                gene_name: LRIT1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 24 percent done.
LRP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.716947e-02	ci left: 5.166574e-01	ci right 5.363271e-01	k: 5265	n:10000
Cons ci ratio: 4.992358e-02	ci left: 3.717661e-01	ci right 3.909031e-01	k: 3813	n:10000
KS ci ratio: 3.642336e-02	ci left: 5.267670e-01	ci right 5.464117e-01	k: 5366	n:10000
LRP5   10000 perm   2 sec   (4345 perm/sec)   p_kst 5.366000e-01   p_cons 3.813000e-01   p_joint 5.265000e-01

Outputting figure to mutsig2_images.part000000000098/LRP5.6_4940_10000_0.5366_0.3813_0.5265.png
                gene_name: LRP5
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 26 percent done.
LONRF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.685557e-02	ci left: 3.129444e-01	ci right 3.313594e-01	k: 3221	n:10000
Cons ci ratio: 1.245959e-02	ci left: 9.024739e-01	ci right 9.138870e-01	k: 9083	n:10000
KS ci ratio: 8.764072e-02	ci left: 1.593447e-01	ci right 1.740500e-01	k: 1666	n:10000
LONRF3   10000 perm   2 sec   (5484 perm/sec)   p_kst 1.666000e-01   p_cons 9.083000e-01   p_joint 3.221000e-01

Outputting figure to mutsig2_images.part000000000098/LONRF3.5_2324_10000_0.1666_0.9083_0.3221.png
                gene_name: LONRF3
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 28 percent done.
LRCH3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.896187e-02	ci left: 2.357064e-01	ci right 2.526429e-01	k: 2441	n:10000
Cons ci ratio: 6.616595e-02	ci left: 2.511271e-01	ci right 2.684130e-01	k: 2597	n:10000
KS ci ratio: 6.818617e-02	ci left: 2.398567e-01	ci right 2.568901e-01	k: 2483	n:10000
LRCH3   10000 perm   2 sec   (5537 perm/sec)   p_kst 2.483000e-01   p_cons 2.597000e-01   p_joint 2.441000e-01

Outputting figure to mutsig2_images.part000000000098/LRCH3.5_2215_10000_0.2483_0.2597_0.2441.png
                gene_name: LRCH3
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 29 percent done.
LRGUK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.299974e-02	ci left: 2.702248e-01	ci right 2.879041e-01	k: 2790	n:10000
Cons ci ratio: 9.028637e-02	ci left: 1.513922e-01	ci right 1.658072e-01	k: 1585	n:10000
KS ci ratio: 5.328022e-02	ci left: 3.417393e-01	ci right 3.605475e-01	k: 3511	n:10000
LRGUK   10000 perm   2 sec   (5702 perm/sec)   p_kst 3.511000e-01   p_cons 1.585000e-01   p_joint 2.790000e-01

Outputting figure to mutsig2_images.part000000000098/LRGUK.5_2558_10000_0.3511_0.1585_0.279.png
                gene_name: LRGUK
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 31 percent done.
LRIG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.391793e-02	ci left: 8.817580e-01	ci right 8.942150e-01	k: 8881	n:10000
Cons ci ratio: 1.585132e-02	ci left: 8.525343e-01	ci right 8.662556e-01	k: 8595	n:10000
KS ci ratio: 2.103091e-02	ci left: 7.682051e-01	ci right 7.846336e-01	k: 7765	n:10000
LRIG2   10000 perm   2 sec   (4963 perm/sec)   p_kst 7.765000e-01   p_cons 8.595000e-01   p_joint 8.881000e-01

Outputting figure to mutsig2_images.part000000000098/LRIG2.5_3270_10000_0.7765_0.8595_0.8881.png
                gene_name: LRIG2
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 33 percent done.
LRP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.587498e-02	ci left: 6.873824e-01	ci right 7.055030e-01	k: 6965	n:10000
Cons ci ratio: 1.085878e-02	ci left: 9.235838e-01	ci right 9.337648e-01	k: 9288	n:10000
KS ci ratio: 4.209097e-02	ci left: 4.545866e-01	ci right 4.742341e-01	k: 4644	n:10000
LRP3   10000 perm   2 sec   (5541 perm/sec)   p_kst 4.644000e-01   p_cons 9.288000e-01   p_joint 6.965000e-01

Outputting figure to mutsig2_images.part000000000098/LRP3.5_2341_10000_0.4644_0.9288_0.6965.png
                gene_name: LRP3
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 34 percent done.
LRP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.779280e-02	ci left: 3.059006e-01	ci right 3.242072e-01	k: 3150	n:10000
Cons ci ratio: 4.693762e-02	ci left: 4.011345e-01	ci right 4.205174e-01	k: 4108	n:10000
KS ci ratio: 8.184094e-02	ci left: 1.789079e-01	ci right 1.942751e-01	k: 1865	n:10000
LRP6   10000 perm   2 sec   (4733 perm/sec)   p_kst 1.865000e-01   p_cons 4.108000e-01   p_joint 3.150000e-01

Outputting figure to mutsig2_images.part000000000098/LRP6.5_4934_10000_0.1865_0.4108_0.315.png
                gene_name: LRP6
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 36 percent done.
LRRC16A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.935644e-02	ci left: 2.336317e-01	ci right 2.505188e-01	k: 2420	n:10000
Cons ci ratio: 1.010478e-01	ci left: 1.241518e-01	ci right 1.374641e-01	k: 1307	n:10000
KS ci ratio: 6.526634e-02	ci left: 2.563695e-01	ci right 2.737676e-01	k: 2650	n:10000
LRRC16A   10000 perm   2 sec   (5101 perm/sec)   p_kst 2.650000e-01   p_cons 1.307000e-01   p_joint 2.420000e-01

Joint ci ratio: 4.420164e-02	ci left: 2.759695e-01	ci right 2.884939e-01	k: 5644	n:20000
Cons ci ratio: 7.019251e-02	ci left: 1.301446e-01	ci right 1.396618e-01	k: 2697	n:20000
KS ci ratio: 4.661705e-02	ci left: 2.550723e-01	ci right 2.672972e-01	k: 5223	n:20000
LRRC16A   20000 perm   4 sec   (4575 perm/sec)   p_kst 2.611500e-01   p_cons 1.348500e-01   p_joint 2.822000e-01

Outputting figure to mutsig2_images.part000000000098/LRRC16A.5_4264_20000_0.26115_0.13485_0.2822.png
                gene_name: LRRC16A
               theta_stop: 0.070 
                    nperm: 20000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 38 percent done.
LONP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.424278e-02	ci left: 4.299405e-01	ci right 4.494947e-01	k: 4397	n:10000
Cons ci ratio: 5.990708e-02	ci left: 2.907303e-01	ci right 3.087865e-01	k: 2997	n:10000
KS ci ratio: 5.814273e-02	ci left: 3.033218e-01	ci right 3.215876e-01	k: 3124	n:10000
LONP2   10000 perm   2 sec   (5278 perm/sec)   p_kst 3.124000e-01   p_cons 2.997000e-01   p_joint 4.397000e-01

Outputting figure to mutsig2_images.part000000000098/LONP2.4_2619_10000_0.3124_0.2997_0.4397.png
                gene_name: LONP2
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 40 percent done.
LPIN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.972212e-02	ci left: 2.920188e-01	ci right 3.100972e-01	k: 3010	n:10000
Cons ci ratio: 7.731236e-02	ci left: 1.965332e-01	ci right 2.124394e-01	k: 2044	n:10000
KS ci ratio: 6.899925e-02	ci left: 2.355088e-01	ci right 2.524406e-01	k: 2439	n:10000
LPIN1   10000 perm   2 sec   (5247 perm/sec)   p_kst 2.439000e-01   p_cons 2.044000e-01   p_joint 3.010000e-01

Outputting figure to mutsig2_images.part000000000098/LPIN1.4_2749_10000_0.2439_0.2044_0.301.png
                gene_name: LPIN1
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 41 percent done.
LPP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.523883e-02	ci left: 5.431911e-01	ci right 5.627780e-01	k: 5530	n:10000
Cons ci ratio: 3.069893e-02	ci left: 6.102019e-01	ci right 6.293283e-01	k: 6198	n:10000
KS ci ratio: 4.686016e-02	ci left: 4.019315e-01	ci right 4.213200e-01	k: 4116	n:10000
LPP   10000 perm   2 sec   (5509 perm/sec)   p_kst 4.116000e-01   p_cons 6.198000e-01   p_joint 5.530000e-01

Outputting figure to mutsig2_images.part000000000098/LPP.4_1875_10000_0.4116_0.6198_0.553.png
                gene_name: LPP
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 43 percent done.
LPPR5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.431726e-02	ci left: 7.132062e-01	ci right 7.308642e-01	k: 7221	n:10000
KS ci ratio: 1.793042e-02	ci left: 8.194416e-01	ci right 8.343675e-01	k: 8270	n:10000
LPPR5   10000 perm   2 sec   (6397 perm/sec)   p_kst 8.270000e-01   p_cons 7.221000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000098/LPPR5.4_990_10000_0.827_0.7221_1.png
                gene_name: LPPR5
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 45 percent done.
LRIG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.295548e-02	ci left: 4.445057e-01	ci right 4.641209e-01	k: 4543	n:10000
Cons ci ratio: 4.672501e-02	ci left: 4.033262e-01	ci right 4.227245e-01	k: 4130	n:10000
KS ci ratio: 5.932719e-02	ci left: 2.947944e-01	ci right 3.129200e-01	k: 3038	n:10000
LRIG3   10000 perm   2 sec   (4978 perm/sec)   p_kst 3.038000e-01   p_cons 4.130000e-01   p_joint 4.543000e-01

Outputting figure to mutsig2_images.part000000000098/LRIG3.4_3496_10000_0.3038_0.413_0.4543.png
                gene_name: LRIG3
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 47 percent done.
LRP12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.615678e-02	ci left: 6.827458e-01	ci right 7.009424e-01	k: 6919	n:10000
Cons ci ratio: 1.862176e-02	ci left: 8.081622e-01	ci right 8.234533e-01	k: 8159	n:10000
KS ci ratio: 3.415440e-02	ci left: 5.586236e-01	ci right 5.781366e-01	k: 5684	n:10000
LRP12   10000 perm   2 sec   (5344 perm/sec)   p_kst 5.684000e-01   p_cons 8.159000e-01   p_joint 6.919000e-01

Outputting figure to mutsig2_images.part000000000098/LRP12.4_2608_10000_0.5684_0.8159_0.6919.png
                gene_name: LRP12
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 48 percent done.
LRPPRC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.380079e-02	ci left: 5.637364e-01	ci right 5.832208e-01	k: 5735	n:10000
Cons ci ratio: 9.280476e-03	ci left: 9.424271e-01	ci right 9.513103e-01	k: 9470	n:10000
KS ci ratio: 4.968114e-02	ci left: 3.740545e-01	ci right 3.932134e-01	k: 3836	n:10000
LRPPRC   10000 perm   2 sec   (4760 perm/sec)   p_kst 3.836000e-01   p_cons 9.470000e-01   p_joint 5.735000e-01

Outputting figure to mutsig2_images.part000000000098/LRPPRC.4_4337_10000_0.3836_0.947_0.5735.png
                gene_name: LRPPRC
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 50 percent done.
LRRC16B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.958397e-02	ci left: 2.324462e-01	ci right 2.493050e-01	k: 2408	n:10000
KS ci ratio: 1.894323e-02	ci left: 8.028818e-01	ci right 8.183368e-01	k: 8107	n:10000
LRRC16B   10000 perm   2 sec   (4797 perm/sec)   p_kst 8.107000e-01   p_cons 2.408000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000098/LRRC16B.4_4279_10000_0.8107_0.2408_1.png
                gene_name: LRRC16B
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 52 percent done.
LOC649330
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.065500e-02	ci left: 7.744852e-01	ci right 7.907498e-01	k: 7827	n:10000
KS ci ratio: 3.056233e-02	ci left: 6.123115e-01	ci right 6.314175e-01	k: 6219	n:10000
LOC649330   10000 perm   2 sec   (6479 perm/sec)   p_kst 6.219000e-01   p_cons 7.827000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000098/LOC649330.3_886_10000_0.6219_0.7827_1.png
                gene_name: LOC649330
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 53 percent done.
LPCAT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.439508e-02	ci left: 2.091515e-01	ci right 2.254135e-01	k: 2172	n:10000
Cons ci ratio: 4.515205e-02	ci left: 4.199692e-01	ci right 4.394718e-01	k: 4297	n:10000
KS ci ratio: 1.156770e-01	ci left: 9.701134e-02	ci right 1.090210e-01	k: 1029	n:10000
LPCAT2   10000 perm   2 sec   (5942 perm/sec)   p_kst 1.029000e-01   p_cons 4.297000e-01   p_joint 2.172000e-01

Joint ci ratio: 7.146855e-02	ci left: 1.260574e-01	ci right 1.354502e-01	k: 2614	n:20000
Cons ci ratio: 3.216908e-02	ci left: 4.191829e-01	ci right 4.329386e-01	k: 8521	n:20000
KS ci ratio: 8.032737e-02	ci left: 1.021099e-01	ci right 1.107049e-01	k: 2127	n:20000
LPCAT2   20000 perm   4 sec   (5349 perm/sec)   p_kst 1.063500e-01   p_cons 4.260500e-01   p_joint 1.307000e-01

Outputting figure to mutsig2_images.part000000000098/LPCAT2.3_1691_20000_0.10635_0.42605_0.1307.png
                gene_name: LPCAT2
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 55 percent done.
LPCAT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.956251e-01	ci left: 3.481398e-02	ci right 4.245779e-02	k: 385	n:10000
Cons ci ratio: 4.184154e-01	ci left: 6.884481e-03	ci right 1.061018e-02	k: 86	n:10000
KS ci ratio: 1.030513e-01	ci left: 1.198488e-01	ci right 1.329697e-01	k: 1263	n:10000
LPCAT3   10000 perm   2 sec   (6226 perm/sec)   p_kst 1.263000e-01   p_cons 8.600000e-03   p_joint 3.850000e-02

Joint ci ratio: 1.580186e-01	ci left: 2.748703e-02	ci right 3.225095e-02	k: 596	n:20000
Cons ci ratio: 3.039027e-01	ci left: 6.997074e-03	ci right 9.548992e-03	k: 164	n:20000
KS ci ratio: 7.241124e-02	ci left: 1.231530e-01	ci right 1.324555e-01	k: 2555	n:20000
LPCAT3   20000 perm   4 sec   (5554 perm/sec)   p_kst 1.277500e-01   p_cons 8.200000e-03   p_joint 2.980000e-02

Joint ci ratio: 1.456769e-01	ci left: 2.184756e-02	ci right 2.531222e-02	k: 706	n:30000
Cons ci ratio: 2.411146e-01	ci left: 7.680255e-03	ci right 9.816515e-03	k: 261	n:30000
KS ci ratio: 5.996969e-02	ci left: 1.209155e-01	ci right 1.284240e-01	k: 3739	n:30000
LPCAT3   30000 perm   6 sec   (5281 perm/sec)   p_kst 1.246333e-01   p_cons 8.700000e-03   p_joint 2.353333e-02

Joint ci ratio: 1.500535e-01	ci left: 1.551503e-02	ci right 1.805582e-02	k: 670	n:40000
Cons ci ratio: 2.048084e-01	ci left: 8.145234e-03	ci right 1.002707e-02	k: 362	n:40000
KS ci ratio: 5.205276e-02	ci left: 1.209333e-01	ci right 1.274213e-01	k: 4966	n:40000
LPCAT3   40000 perm   8 sec   (5093 perm/sec)   p_kst 1.241500e-01   p_cons 9.050000e-03   p_joint 1.675000e-02

Joint ci ratio: 1.451350e-01	ci left: 1.333547e-02	ci right 1.544146e-02	k: 718	n:50000
Cons ci ratio: 1.880023e-01	ci left: 7.809280e-03	ci right 9.448536e-03	k: 430	n:50000
KS ci ratio: 4.658212e-02	ci left: 1.211626e-01	ci right 1.269611e-01	k: 6202	n:50000
LPCAT3   50000 perm   10 sec   (4956 perm/sec)   p_kst 1.240400e-01   p_cons 8.600000e-03   p_joint 1.436000e-02

Joint ci ratio: 1.151458e-01	ci left: 1.785779e-02	ci right 2.005576e-02	k: 1136	n:60000
Cons ci ratio: 1.700049e-01	ci left: 8.036275e-03	ci right 9.545148e-03	k: 526	n:60000
KS ci ratio: 4.242143e-02	ci left: 1.219342e-01	ci right 1.272355e-01	k: 7474	n:60000
LPCAT3   60000 perm   12 sec   (4840 perm/sec)   p_kst 1.245667e-01   p_cons 8.766667e-03   p_joint 1.893333e-02

Joint ci ratio: 1.177497e-01	ci left: 1.466723e-02	ci right 1.651610e-02	k: 1090	n:70000
Cons ci ratio: 1.884563e-01	ci left: 5.563822e-03	ci right 6.734825e-03	k: 429	n:70000
KS ci ratio: 3.935416e-02	ci left: 1.216944e-01	ci right 1.265939e-01	k: 8689	n:70000
LPCAT3   70000 perm   15 sec   (4732 perm/sec)   p_kst 1.241286e-01   p_cons 6.128571e-03   p_joint 1.557143e-02

Joint ci ratio: 1.180308e-01	ci left: 1.279669e-02	ci right 1.441387e-02	k: 1087	n:80000
Cons ci ratio: 1.776409e-01	ci left: 5.512421e-03	ci right 6.598869e-03	k: 483	n:80000
KS ci ratio: 3.675213e-02	ci left: 1.222072e-01	ci right 1.267951e-01	k: 9959	n:80000
LPCAT3   80000 perm   17 sec   (4635 perm/sec)   p_kst 1.244875e-01   p_cons 6.037500e-03   p_joint 1.358750e-02

Joint ci ratio: 8.888063e-02	ci left: 2.021444e-02	ci right 2.210549e-02	k: 1903	n:90000
Cons ci ratio: 1.669426e-01	ci left: 5.580415e-03	ci right 6.607367e-03	k: 547	n:90000
KS ci ratio: 3.382760e-02	ci left: 1.276328e-01	ci right 1.320356e-01	k: 11684	n:90000
LPCAT3   90000 perm   20 sec   (4541 perm/sec)   p_kst 1.298222e-01   p_cons 6.077778e-03   p_joint 2.114444e-02

Joint ci ratio: 8.686116e-02	ci left: 1.909229e-02	ci right 2.083571e-02	k: 1995	n:100000
Cons ci ratio: 1.590193e-01	ci left: 5.559536e-03	ci right 6.529451e-03	k: 603	n:100000
KS ci ratio: 3.216767e-02	ci left: 1.272162e-01	ci right 1.313853e-01	k: 12929	n:100000
LPCAT3   100000 perm   22 sec   (4456 perm/sec)   p_kst 1.292900e-01   p_cons 6.030000e-03   p_joint 1.995000e-02

Joint ci ratio: 9.442068e-02	ci left: 1.469833e-02	ci right 1.616375e-02	k: 1696	n:110000
Cons ci ratio: 1.514357e-01	ci left: 5.595883e-03	ci right 6.521360e-03	k: 665	n:110000
KS ci ratio: 3.066201e-02	ci left: 1.273766e-01	ci right 1.313521e-01	k: 14229	n:110000
LPCAT3   110000 perm   25 sec   (4380 perm/sec)   p_kst 1.293545e-01   p_cons 6.045455e-03   p_joint 1.541818e-02

Joint ci ratio: 8.756786e-02	ci left: 1.570524e-02	ci right 1.715160e-02	k: 1970	n:120000
Cons ci ratio: 1.455486e-01	ci left: 5.570861e-03	ci right 6.453268e-03	k: 720	n:120000
KS ci ratio: 2.930532e-02	ci left: 1.278536e-01	ci right 1.316643e-01	k: 15570	n:120000
LPCAT3   120000 perm   28 sec   (4300 perm/sec)   p_kst 1.297500e-01   p_cons 6.000000e-03   p_joint 1.641667e-02

Joint ci ratio: 9.666331e-02	ci left: 1.188808e-02	ci right 1.310304e-02	k: 1623	n:130000
Cons ci ratio: 1.399363e-01	ci left: 5.579976e-03	ci right 6.426902e-03	k: 779	n:130000
KS ci ratio: 2.811122e-02	ci left: 1.282833e-01	ci right 1.319486e-01	k: 16914	n:130000
LPCAT3   130000 perm   31 sec   (4226 perm/sec)   p_kst 1.301077e-01   p_cons 5.992308e-03   p_joint 1.248462e-02

Joint ci ratio: 8.467228e-02	ci left: 1.443971e-02	ci right 1.572335e-02	k: 2110	n:140000
Cons ci ratio: 1.346044e-01	ci left: 5.615962e-03	ci right 6.433272e-03	k: 842	n:140000
KS ci ratio: 2.712904e-02	ci left: 1.280152e-01	ci right 1.315430e-01	k: 18168	n:140000
LPCAT3   140000 perm   34 sec   (4154 perm/sec)   p_kst 1.297714e-01   p_cons 6.014286e-03   p_joint 1.507143e-02

Joint ci ratio: 6.938858e-02	ci left: 2.010993e-02	ci right 2.156201e-02	k: 3124	n:150000
Cons ci ratio: 1.288412e-01	ci left: 5.738010e-03	ci right 6.534594e-03	k: 919	n:150000
KS ci ratio: 2.620124e-02	ci left: 1.281428e-01	ci right 1.315515e-01	k: 19476	n:150000
LPCAT3   150000 perm   37 sec   (4090 perm/sec)   p_kst 1.298400e-01   p_cons 6.126667e-03   p_joint 2.082667e-02

Joint ci ratio: 8.000839e-02	ci left: 1.418950e-02	ci right 1.537818e-02	k: 2364	n:160000
Cons ci ratio: 1.248995e-01	ci left: 5.736432e-03	ci right 6.506629e-03	k: 978	n:160000
KS ci ratio: 2.533385e-02	ci left: 1.285111e-01	ci right 1.318148e-01	k: 20825	n:160000
LPCAT3   160000 perm   40 sec   (4025 perm/sec)   p_kst 1.301563e-01   p_cons 6.112500e-03   p_joint 1.477500e-02

Joint ci ratio: 8.605447e-02	ci left: 1.153961e-02	ci right 1.258301e-02	k: 2049	n:170000
Cons ci ratio: 1.212400e-01	ci left: 5.741072e-03	ci right 6.487687e-03	k: 1038	n:170000
KS ci ratio: 2.458999e-02	ci left: 1.284457e-01	ci right 1.316493e-01	k: 22107	n:170000
LPCAT3   170000 perm   43 sec   (3962 perm/sec)   p_kst 1.300412e-01   p_cons 6.105882e-03   p_joint 1.205294e-02

Joint ci ratio: 7.424663e-02	ci left: 1.468346e-02	ci right 1.582112e-02	k: 2744	n:180000
Cons ci ratio: 1.182095e-01	ci left: 5.713134e-03	ci right 6.436246e-03	k: 1092	n:180000
KS ci ratio: 2.384479e-02	ci left: 1.289857e-01	ci right 1.321040e-01	k: 23497	n:180000
LPCAT3   180000 perm   46 sec   (3902 perm/sec)   p_kst 1.305389e-01   p_cons 6.066667e-03   p_joint 1.524444e-02

Joint ci ratio: 8.158299e-02	ci left: 1.151523e-02	ci right 1.249975e-02	k: 2280	n:190000
Cons ci ratio: 1.150929e-01	ci left: 5.719019e-03	ci right 6.422495e-03	k: 1152	n:190000
KS ci ratio: 2.321605e-02	ci left: 1.289569e-01	ci right 1.319912e-01	k: 24789	n:190000
LPCAT3   190000 perm   49 sec   (3842 perm/sec)   p_kst 1.304684e-01   p_cons 6.063158e-03   p_joint 1.200000e-02

Joint ci ratio: 8.128398e-02	ci left: 1.102752e-02	ci right 1.196672e-02	k: 2298	n:200000
Cons ci ratio: 1.124439e-01	ci left: 5.700240e-03	ci right 6.384196e-03	k: 1207	n:200000
KS ci ratio: 2.263906e-02	ci left: 1.288872e-01	ci right 1.318435e-01	k: 26072	n:200000
LPCAT3   200000 perm   53 sec   (3786 perm/sec)   p_kst 1.303600e-01   p_cons 6.035000e-03   p_joint 1.149000e-02

Joint ci ratio: 7.801074e-02	ci left: 1.141723e-02	ci right 1.234869e-02	k: 2494	n:210000
Cons ci ratio: 1.097950e-01	ci left: 5.701944e-03	ci right 6.368945e-03	k: 1266	n:210000
KS ci ratio: 2.210212e-02	ci left: 1.288345e-01	ci right 1.317186e-01	k: 27357	n:210000
LPCAT3   210000 perm   56 sec   (3731 perm/sec)   p_kst 1.302714e-01   p_cons 6.028571e-03   p_joint 1.187619e-02

Joint ci ratio: 6.553128e-02	ci left: 1.547979e-02	ci right 1.653301e-02	k: 3520	n:220000
Cons ci ratio: 1.070007e-01	ci left: 5.739059e-03	ci right 6.392239e-03	k: 1333	n:220000
KS ci ratio: 2.158952e-02	ci left: 1.289140e-01	ci right 1.317321e-01	k: 28670	n:220000
LPCAT3   220000 perm   60 sec   (3678 perm/sec)   p_kst 1.303182e-01   p_cons 6.059091e-03   p_joint 1.600000e-02

Joint ci ratio: 6.601290e-02	ci left: 1.460128e-02	ci right 1.560230e-02	k: 3472	n:230000
Cons ci ratio: 1.050907e-01	ci left: 5.696921e-03	ci right 6.333016e-03	k: 1382	n:230000
KS ci ratio: 2.113087e-02	ci left: 1.287752e-01	ci right 1.315297e-01	k: 29934	n:230000
LPCAT3   230000 perm   63 sec   (3626 perm/sec)   p_kst 1.301478e-01   p_cons 6.008696e-03   p_joint 1.509565e-02

Joint ci ratio: 6.035870e-02	ci left: 1.674927e-02	ci right 1.779577e-02	k: 4144	n:240000
Cons ci ratio: 1.021728e-01	ci left: 5.784257e-03	ci right 6.411095e-03	k: 1462	n:240000
KS ci ratio: 2.067969e-02	ci left: 1.288726e-01	ci right 1.315696e-01	k: 31252	n:240000
LPCAT3   240000 perm   67 sec   (3576 perm/sec)   p_kst 1.302167e-01   p_cons 6.091667e-03   p_joint 1.726667e-02

Joint ci ratio: 5.471819e-02	ci left: 1.956528e-02	ci right 2.066989e-02	k: 5028	n:250000
Cons ci ratio: 1.003392e-01	ci left: 5.763413e-03	ci right 6.376123e-03	k: 1516	n:250000
KS ci ratio: 2.024801e-02	ci left: 1.290544e-01	ci right 1.316982e-01	k: 32593	n:250000
LPCAT3   250000 perm   71 sec   (3528 perm/sec)   p_kst 1.303720e-01   p_cons 6.064000e-03   p_joint 2.011200e-02

Joint ci ratio: 5.185852e-02	ci left: 2.094589e-02	ci right 2.206481e-02	k: 5590	n:260000
Cons ci ratio: 9.828672e-02	ci left: 5.781786e-03	ci right 6.383151e-03	k: 1580	n:260000
KS ci ratio: 1.985439e-02	ci left: 1.290848e-01	ci right 1.316772e-01	k: 33898	n:260000
LPCAT3   260000 perm   75 sec   (3482 perm/sec)   p_kst 1.303769e-01   p_cons 6.076923e-03   p_joint 2.150000e-02

Outputting figure to mutsig2_images.part000000000098/LPCAT3.3_1512_260000_0.13038_0.0060769_0.0215.png
                gene_name: LPCAT3
               theta_stop: 0.098 
                    nperm: 260000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.0061 
      ci_cons_bounds_left: 0.0058 
     ci_cons_bounds_right: 0.0064 
                  p_joint: 0.021 
     ci_joint_bounds_left: 0.021 
    ci_joint_bounds_right: 0.022 

Current progress: 57 percent done.
LPGAT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.892077e-02	ci left: 4.936506e-01	ci right 5.133474e-01	k: 5035	n:10000
Cons ci ratio: 1.058498e-01	ci left: 1.141806e-01	ci right 1.270413e-01	k: 1205	n:10000
KS ci ratio: 4.940915e-02	ci left: 3.766417e-01	ci right 3.958246e-01	k: 3862	n:10000
LPGAT1   10000 perm   2 sec   (6195 perm/sec)   p_kst 3.862000e-01   p_cons 1.205000e-01   p_joint 5.035000e-01

Joint ci ratio: 3.144633e-02	ci left: 4.303099e-01	ci right 4.441084e-01	k: 8744	n:20000
Cons ci ratio: 7.380830e-02	ci left: 1.190194e-01	ci right 1.281903e-01	k: 2471	n:20000
KS ci ratio: 3.515567e-02	ci left: 3.765542e-01	ci right 3.900797e-01	k: 7666	n:20000
LPGAT1   20000 perm   4 sec   (5533 perm/sec)   p_kst 3.833000e-01   p_cons 1.235500e-01   p_joint 4.372000e-01

Outputting figure to mutsig2_images.part000000000098/LPGAT1.3_1141_20000_0.3833_0.12355_0.4372.png
                gene_name: LPGAT1
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.44 

Current progress: 59 percent done.
LPHN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.977843e-02	ci left: 4.827546e-01	ci right 5.024497e-01	k: 4926	n:10000
KS ci ratio: 1.654028e-02	ci left: 8.417290e-01	ci right 8.558672e-01	k: 8489	n:10000
LPHN1   10000 perm   2 sec   (4941 perm/sec)   p_kst 8.489000e-01   p_cons 4.926000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000098/LPHN1.3_4517_10000_0.8489_0.4926_1.png
                gene_name: LPHN1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 60 percent done.
LPL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.986977e-02	ci left: 7.875606e-01	ci right 8.034668e-01	k: 7956	n:10000
KS ci ratio: 4.377012e-02	ci left: 4.352269e-01	ci right 4.548052e-01	k: 4450	n:10000
LPL   10000 perm   2 sec   (6176 perm/sec)   p_kst 4.450000e-01   p_cons 7.956000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000098/LPL.3_1468_10000_0.445_0.7956_1.png
                gene_name: LPL
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
LRCH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.925720e-02	ci left: 6.327145e-01	ci right 6.516026e-01	k: 6422	n:10000
Cons ci ratio: 6.844577e-03	ci left: 9.669936e-01	ci right 9.737287e-01	k: 9705	n:10000
KS ci ratio: 3.921764e-02	ci left: 4.898515e-01	ci right 5.095487e-01	k: 4997	n:10000
LRCH1   10000 perm   2 sec   (5825 perm/sec)   p_kst 4.997000e-01   p_cons 9.705000e-01   p_joint 6.422000e-01

Outputting figure to mutsig2_images.part000000000098/LRCH1.3_2487_10000_0.4997_0.9705_0.6422.png
                gene_name: LRCH1
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 64 percent done.
LRFN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.265484e-02	ci left: 3.471054e-01	ci right 3.659783e-01	k: 3565	n:10000
Cons ci ratio: 2.229388e-02	ci left: 7.470537e-01	ci right 7.639972e-01	k: 7556	n:10000
KS ci ratio: 1.032853e-01	ci left: 1.193599e-01	ci right 1.324588e-01	k: 1258	n:10000
LRFN1   10000 perm   2 sec   (5809 perm/sec)   p_kst 1.258000e-01   p_cons 7.556000e-01   p_joint 3.565000e-01

Joint ci ratio: 5.417794e-02	ci left: 2.017988e-01	ci right 2.130864e-01	k: 4148	n:20000
Cons ci ratio: 1.582826e-02	ci left: 7.480704e-01	ci right 7.600557e-01	k: 15082	n:20000
KS ci ratio: 7.331842e-02	ci left: 1.204463e-01	ci right 1.296630e-01	k: 2500	n:20000
LRFN1   20000 perm   4 sec   (5210 perm/sec)   p_kst 1.250000e-01   p_cons 7.541000e-01   p_joint 2.074000e-01

Outputting figure to mutsig2_images.part000000000098/LRFN1.3_2324_20000_0.125_0.7541_0.2074.png
                gene_name: LRFN1
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 66 percent done.
LRG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.600840e-02	ci left: 8.500867e-01	ci right 8.639046e-01	k: 8571	n:10000
KS ci ratio: 1.783012e-02	ci left: 8.210683e-01	ci right 8.359398e-01	k: 8286	n:10000
LRG1   10000 perm   1 sec   (6858 perm/sec)   p_kst 8.286000e-01   p_cons 8.571000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000098/LRG1.3_1052_10000_0.8286_0.8571_1.png
                gene_name: LRG1
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
LRIG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.062465e-02	ci left: 7.749918e-01	ci right 7.912430e-01	k: 7832	n:10000
KS ci ratio: 2.349480e-02	ci left: 7.269395e-01	ci right 7.443230e-01	k: 7357	n:10000
LRIG1   10000 perm   2 sec   (5373 perm/sec)   p_kst 7.357000e-01   p_cons 7.832000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000098/LRIG1.3_3358_10000_0.7357_0.7832_1.png
                gene_name: LRIG1
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 69 percent done.
LRIT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.869758e-01	ci left: 3.815245e-02	ci right 4.611708e-02	k: 420	n:10000
Cons ci ratio: 1.494065e-01	ci left: 5.956990e-02	ci right 6.928573e-02	k: 643	n:10000
KS ci ratio: 1.001686e-01	ci left: 1.261085e-01	ci right 1.395062e-01	k: 1327	n:10000
LRIT2   10000 perm   2 sec   (6204 perm/sec)   p_kst 1.327000e-01   p_cons 6.430000e-02   p_joint 4.200000e-02

Joint ci ratio: 1.260130e-01	ci left: 4.323490e-02	ci right 4.909795e-02	k: 922	n:20000
Cons ci ratio: 1.085134e-01	ci left: 5.791700e-02	ci right 6.461125e-02	k: 1224	n:20000
KS ci ratio: 7.134306e-02	ci left: 1.264513e-01	ci right 1.358562e-01	k: 2622	n:20000
LRIT2   20000 perm   4 sec   (5445 perm/sec)   p_kst 1.311000e-01   p_cons 6.120000e-02   p_joint 4.610000e-02

Joint ci ratio: 1.079984e-01	ci left: 3.979041e-02	ci right 4.436547e-02	k: 1261	n:30000
Cons ci ratio: 8.871728e-02	ci left: 5.838299e-02	ci right 6.383572e-02	k: 1832	n:30000
KS ci ratio: 5.780861e-02	ci left: 1.290447e-01	ci right 1.367598e-01	k: 3986	n:30000
LRIT2   30000 perm   6 sec   (5174 perm/sec)   p_kst 1.328667e-01   p_cons 6.106667e-02   p_joint 4.203333e-02

Joint ci ratio: 8.835558e-02	ci left: 4.482406e-02	ci right 4.899204e-02	k: 1875	n:40000
Cons ci ratio: 7.780260e-02	ci left: 5.734857e-02	ci right 6.201561e-02	k: 2386	n:40000
KS ci ratio: 5.011280e-02	ci left: 1.293402e-01	ci right 1.360132e-01	k: 5306	n:40000
LRIT2   40000 perm   8 sec   (5009 perm/sec)   p_kst 1.326500e-01   p_cons 5.965000e-02   p_joint 4.687500e-02

Outputting figure to mutsig2_images.part000000000098/LRIT2.3_1665_40000_0.13265_0.05965_0.046875.png
                gene_name: LRIT2
               theta_stop: 0.088 
                    nperm: 40000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.060 
      ci_cons_bounds_left: 0.057 
     ci_cons_bounds_right: 0.062 
                  p_joint: 0.047 
     ci_joint_bounds_left: 0.045 
    ci_joint_bounds_right: 0.049 

Current progress: 71 percent done.
LRP10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.148972e-01	ci left: 2.873209e-02	ci right 3.574387e-02	k: 321	n:10000
Cons ci ratio: 3.254388e-01	ci left: 1.197339e-02	ci right 1.671572e-02	k: 142	n:10000
KS ci ratio: 3.566129e-02	ci left: 5.372812e-01	ci right 5.568913e-01	k: 5471	n:10000
LRP10   10000 perm   2 sec   (5705 perm/sec)   p_kst 5.471000e-01   p_cons 1.420000e-02   p_joint 3.210000e-02

Joint ci ratio: 1.595400e-01	ci left: 2.695830e-02	ci right 3.167987e-02	k: 585	n:20000
Cons ci ratio: 2.201831e-01	ci left: 1.388097e-02	ci right 1.736192e-02	k: 311	n:20000
KS ci ratio: 2.531992e-02	ci left: 5.381676e-01	ci right 5.520193e-01	k: 10902	n:20000
LRP10   20000 perm   4 sec   (5140 perm/sec)   p_kst 5.451000e-01   p_cons 1.555000e-02   p_joint 2.925000e-02

Joint ci ratio: 7.496317e-02	ci left: 8.039339e-02	ci right 8.668754e-02	k: 2505	n:30000
Cons ci ratio: 1.795854e-01	ci left: 1.422811e-02	ci right 1.706682e-02	k: 468	n:30000
KS ci ratio: 2.054242e-02	ci left: 5.426140e-01	ci right 5.539099e-01	k: 16448	n:30000
LRP10   30000 perm   6 sec   (4910 perm/sec)   p_kst 5.482667e-01   p_cons 1.560000e-02   p_joint 8.350000e-02

Joint ci ratio: 6.053829e-02	ci left: 9.199556e-02	ci right 9.776341e-02	k: 3794	n:40000
Cons ci ratio: 1.527379e-01	ci left: 1.496149e-02	ci right 1.745946e-02	k: 647	n:40000
KS ci ratio: 1.790087e-02	ci left: 5.403045e-01	ci right 5.500889e-01	k: 21808	n:40000
LRP10   40000 perm   8 sec   (4765 perm/sec)   p_kst 5.452000e-01   p_cons 1.617500e-02   p_joint 9.485000e-02

Joint ci ratio: 5.908872e-02	ci left: 7.850453e-02	ci right 8.330426e-02	k: 4044	n:50000
Cons ci ratio: 1.316609e-01	ci left: 1.627197e-02	ci right 1.858454e-02	k: 870	n:50000
KS ci ratio: 1.598919e-02	ci left: 5.415033e-01	ci right 5.502514e-01	k: 27294	n:50000
LRP10   50000 perm   11 sec   (4654 perm/sec)   p_kst 5.458800e-01   p_cons 1.740000e-02   p_joint 8.088000e-02

Joint ci ratio: 5.994281e-02	ci left: 6.453549e-02	ci right 6.853989e-02	k: 3991	n:60000
Cons ci ratio: 1.202599e-01	ci left: 1.635263e-02	ci right 1.846108e-02	k: 1043	n:60000
KS ci ratio: 1.456612e-02	ci left: 5.429064e-01	ci right 5.508891e-01	k: 32814	n:60000
LRP10   60000 perm   13 sec   (4555 perm/sec)   p_kst 5.469000e-01   p_cons 1.738333e-02   p_joint 6.651667e-02

Joint ci ratio: 6.007192e-02	ci left: 5.561768e-02	ci right 5.907627e-02	k: 4013	n:70000
Cons ci ratio: 1.109228e-01	ci left: 1.655542e-02	ci right 1.851343e-02	k: 1226	n:70000
KS ci ratio: 1.348254e-02	ci left: 5.433177e-01	ci right 5.507070e-01	k: 38291	n:70000
LRP10   70000 perm   16 sec   (4464 perm/sec)   p_kst 5.470143e-01   p_cons 1.751429e-02   p_joint 5.732857e-02

Joint ci ratio: 6.457252e-02	ci left: 4.261371e-02	ci right 4.546947e-02	k: 3522	n:80000
Cons ci ratio: 1.049180e-01	ci left: 1.624945e-02	ci right 1.806081e-02	k: 1371	n:80000
KS ci ratio: 1.264687e-02	ci left: 5.421794e-01	ci right 5.490923e-01	k: 43651	n:80000
LRP10   80000 perm   18 sec   (4378 perm/sec)   p_kst 5.456375e-01   p_cons 1.713750e-02   p_joint 4.402500e-02

Joint ci ratio: 6.330201e-02	ci left: 3.957153e-02	ci right 4.216928e-02	k: 3677	n:90000
Cons ci ratio: 9.945997e-02	ci left: 1.612213e-02	ci right 1.782032e-02	k: 1526	n:90000
KS ci ratio: 1.192932e-02	ci left: 5.421399e-01	ci right 5.486572e-01	k: 49086	n:90000
LRP10   90000 perm   21 sec   (4297 perm/sec)   p_kst 5.454000e-01   p_cons 1.695556e-02   p_joint 4.085556e-02

Outputting figure to mutsig2_images.part000000000098/LRP10.3_2170_90000_0.5454_0.016956_0.040856.png
                gene_name: LRP10
               theta_stop: 0.099 
                    nperm: 90000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.017 
      ci_cons_bounds_left: 0.016 
     ci_cons_bounds_right: 0.018 
                  p_joint: 0.041 
     ci_joint_bounds_left: 0.040 
    ci_joint_bounds_right: 0.042 

Current progress: 72 percent done.
LRRC15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.450658e-02	ci left: 3.315077e-01	ci right 3.501851e-01	k: 3408	n:10000
Cons ci ratio: 6.808752e-03	ci left: 9.673099e-01	ci right 9.740122e-01	k: 9708	n:10000
KS ci ratio: 1.340238e-01	ci left: 7.349567e-02	ci right 8.415122e-02	k: 787	n:10000
LRRC15   10000 perm   2 sec   (5864 perm/sec)   p_kst 7.870000e-02   p_cons 9.708000e-01   p_joint 3.408000e-01

Joint ci ratio: 4.854030e-02	ci left: 2.398947e-01	ci right 2.518792e-01	k: 4917	n:20000
Cons ci ratio: 4.478763e-03	ci left: 9.723242e-01	ci right 9.767363e-01	k: 19492	n:20000
KS ci ratio: 9.486915e-02	ci left: 7.490680e-02	ci right 8.241624e-02	k: 1572	n:20000
LRRC15   20000 perm   4 sec   (5245 perm/sec)   p_kst 7.860000e-02   p_cons 9.746000e-01   p_joint 2.458500e-01

Outputting figure to mutsig2_images.part000000000098/LRRC15.3_1772_20000_0.0786_0.9746_0.24585.png
                gene_name: LRRC15
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.079 
        ci_ks_bounds_left: 0.075 
       ci_ks_bounds_right: 0.082 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 74 percent done.
LONRF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.564030e-01	ci left: 5.446081e-02	ci right 6.379808e-02	k: 590	n:10000
Cons ci ratio: 8.732659e-02	ci left: 1.603269e-01	ci right 1.750672e-01	k: 1676	n:10000
KS ci ratio: 1.824960e-01	ci left: 4.006355e-02	ci right 4.820470e-02	k: 440	n:10000
LONRF2   10000 perm   2 sec   (6096 perm/sec)   p_kst 4.400000e-02   p_cons 1.676000e-01   p_joint 5.900000e-02

Joint ci ratio: 1.395578e-01	ci left: 3.529592e-02	ci right 4.063949e-02	k: 758	n:20000
Cons ci ratio: 6.199459e-02	ci left: 1.614102e-01	ci right 1.717869e-01	k: 3331	n:20000
KS ci ratio: 1.308419e-01	ci left: 4.013335e-02	ci right 4.580049e-02	k: 858	n:20000
LONRF2   20000 perm   4 sec   (5432 perm/sec)   p_kst 4.290000e-02   p_cons 1.665500e-01   p_joint 3.790000e-02

Joint ci ratio: 7.594286e-02	ci left: 7.846068e-02	ci right 8.468730e-02	k: 2446	n:30000
Cons ci ratio: 5.098011e-02	ci left: 1.604198e-01	ci right 1.688452e-01	k: 4938	n:30000
KS ci ratio: 1.056181e-01	ci left: 4.157680e-02	ci right 4.624538e-02	k: 1316	n:30000
LONRF2   30000 perm   6 sec   (5192 perm/sec)   p_kst 4.386667e-02   p_cons 1.646000e-01   p_joint 8.153333e-02

Joint ci ratio: 4.831724e-02	ci left: 1.378753e-01	ci right 1.447269e-01	k: 5651	n:40000
Cons ci ratio: 4.413547e-02	ci left: 1.610771e-01	ci right 1.683717e-01	k: 6588	n:40000
KS ci ratio: 9.155011e-02	ci left: 4.181515e-02	ci right 4.585141e-02	k: 1752	n:40000
LONRF2   40000 perm   8 sec   (5028 perm/sec)   p_kst 4.380000e-02   p_cons 1.647000e-01   p_joint 1.412750e-01

Outputting figure to mutsig2_images.part000000000098/LONRF2.2_2313_40000_0.0438_0.1647_0.14128.png
                gene_name: LONRF2
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.044 
        ci_ks_bounds_left: 0.042 
       ci_ks_bounds_right: 0.046 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.14 

Current progress: 76 percent done.
LOXL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.917845e-02	ci left: 4.903513e-01	ci right 5.100486e-01	k: 5002	n:10000
KS ci ratio: 3.153199e-02	ci left: 5.974476e-01	ci right 6.166900e-01	k: 6071	n:10000
LOXL2   10000 perm   2 sec   (5941 perm/sec)   p_kst 6.071000e-01   p_cons 5.002000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000098/LOXL2.2_2377_10000_0.6071_0.5002_1.png
                gene_name: LOXL2
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
LOXL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.511849e-02	ci left: 6.998865e-01	ci right 7.177916e-01	k: 7089	n:10000
KS ci ratio: 3.465118e-02	ci left: 5.515074e-01	ci right 5.710568e-01	k: 5613	n:10000
LOXL3   10000 perm   2 sec   (5971 perm/sec)   p_kst 5.613000e-01   p_cons 7.089000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000098/LOXL3.2_2314_10000_0.5613_0.7089_1.png
                gene_name: LOXL3
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
LPAR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
KS ci ratio: 1.131130e-02	ci left: 9.178069e-01	ci right 9.283451e-01	k: 9232	n:10000
LPAR2   10000 perm   2 sec   (6594 perm/sec)   p_kst 9.232000e-01   p_cons 1   p_joint 1

Outputting figure to mutsig2_images.part000000000098/LPAR2.2_1064_10000_0.9232_1_1.png
                gene_name: LPAR2
               theta_stop: 0.011 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 1 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
LPAR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.577252e-02	ci left: 8.537584e-01	ci right 8.674308e-01	k: 8607	n:10000
Cons ci ratio: 2.442631e-02	ci left: 7.113894e-01	ci right 7.290822e-01	k: 7203	n:10000
KS ci ratio: 2.274035e-02	ci left: 7.395713e-01	ci right 7.566839e-01	k: 7482	n:10000
LPAR3   10000 perm   2 sec   (6574 perm/sec)   p_kst 7.482000e-01   p_cons 7.203000e-01   p_joint 8.607000e-01

Outputting figure to mutsig2_images.part000000000098/LPAR3.2_1070_10000_0.7482_0.7203_0.8607.png
                gene_name: LPAR3
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 83 percent done.
LPO
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.920124e-02	ci left: 2.956866e-01	ci right 3.138273e-01	k: 3047	n:10000
Cons ci ratio: 6.416248e-02	ci left: 2.629989e-01	ci right 2.805343e-01	k: 2717	n:10000
KS ci ratio: 3.208993e-02	ci left: 5.890154e-01	ci right 6.083271e-01	k: 5987	n:10000
LPO   10000 perm   2 sec   (6046 perm/sec)   p_kst 5.987000e-01   p_cons 2.717000e-01   p_joint 3.047000e-01

Outputting figure to mutsig2_images.part000000000098/LPO.2_2187_10000_0.5987_0.2717_0.3047.png
                gene_name: LPO
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 84 percent done.
LPPR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.017843e-02	ci left: 3.693784e-01	ci right 3.884922e-01	k: 3789	n:10000
Cons ci ratio: 1.634652e-02	ci left: 8.447858e-01	ci right 8.588086e-01	k: 8519	n:10000
KS ci ratio: 8.194893e-02	ci left: 1.785143e-01	ci right 1.938689e-01	k: 1861	n:10000
LPPR1   10000 perm   1 sec   (6869 perm/sec)   p_kst 1.861000e-01   p_cons 8.519000e-01   p_joint 3.789000e-01

Outputting figure to mutsig2_images.part000000000098/LPPR1.2_1006_10000_0.1861_0.8519_0.3789.png
                gene_name: LPPR1
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 86 percent done.
LPXN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.860600e-02	ci left: 3.844050e-01	ci right 4.036568e-01	k: 3940	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
LPXN   10000 perm   1 sec   (6721 perm/sec)   p_kst 1   p_cons 3.940000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000098/LPXN.2_1229_10000_1_0.394_1.png
                gene_name: LPXN
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
LRAT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.073045e-02	ci left: 2.850816e-01	ci right 3.030385e-01	k: 2940	n:10000
Cons ci ratio: 2.381504e-02	ci left: 7.215864e-01	ci right 7.390793e-01	k: 7304	n:10000
KS ci ratio: 1.083685e-01	ci left: 1.093957e-01	ci right 1.220291e-01	k: 1156	n:10000
LRAT   10000 perm   1 sec   (6796 perm/sec)   p_kst 1.156000e-01   p_cons 7.304000e-01   p_joint 2.940000e-01

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 1.664347e-02	ci left: 7.288247e-01	ci right 7.411069e-01	k: 14700	n:20000
KS ci ratio: 7.574393e-02	ci left: 1.136089e-01	ci right 1.226025e-01	k: 2361	n:20000
LRAT   20000 perm   3 sec   (6038 perm/sec)   p_kst 1.180500e-01   p_cons 7.350000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000098/LRAT.2_701_20000_0.11805_0.735_1.png
                gene_name: LRAT
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
LRCH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.099754e-02	ci left: 9.218292e-01	ci right 9.321204e-01	k: 9271	n:10000
Cons ci ratio: 1.725017e-01	ci left: 4.485094e-02	ci right 5.341415e-02	k: 490	n:10000
KS ci ratio: 1.460163e-02	ci left: 8.716295e-01	ci right 8.845493e-01	k: 8782	n:10000
LRCH2   10000 perm   2 sec   (6023 perm/sec)   p_kst 8.782000e-01   p_cons 4.900000e-02   p_joint 9.271000e-01

Joint ci ratio: 1.807001e-02	ci left: 6.953556e-01	ci right 7.080857e-01	k: 14035	n:20000
Cons ci ratio: 1.231045e-01	ci left: 4.527241e-02	ci right 5.125980e-02	k: 964	n:20000
KS ci ratio: 1.019076e-02	ci left: 8.763813e-01	ci right 8.854076e-01	k: 17619	n:20000
LRCH2   20000 perm   4 sec   (5403 perm/sec)   p_kst 8.809500e-01   p_cons 4.820000e-02   p_joint 7.017500e-01

Joint ci ratio: 7.286476e-03	ci left: 9.027432e-01	ci right 9.093779e-01	k: 27183	n:30000
Cons ci ratio: 1.010851e-01	ci left: 4.531547e-02	ci right 5.017259e-02	k: 1431	n:30000
KS ci ratio: 8.270773e-03	ci left: 8.784984e-01	ci right 8.858274e-01	k: 26466	n:30000
LRCH2   30000 perm   6 sec   (5146 perm/sec)   p_kst 8.822000e-01   p_cons 4.770000e-02   p_joint 9.061000e-01

Joint ci ratio: 6.681615e-03	ci left: 8.928659e-01	ci right 8.988765e-01	k: 35836	n:40000
Cons ci ratio: 8.747850e-02	ci left: 4.570519e-02	ci right 4.991077e-02	k: 1911	n:40000
KS ci ratio: 7.159123e-03	ci left: 8.791017e-01	ci right 8.854427e-01	k: 35292	n:40000
LRCH2   40000 perm   8 sec   (4990 perm/sec)   p_kst 8.823000e-01   p_cons 4.777500e-02   p_joint 8.959000e-01

Outputting figure to mutsig2_images.part000000000098/LRCH2.2_2382_40000_0.8823_0.047775_0.8959.png
                gene_name: LRCH2
               theta_stop: 0.087 
                    nperm: 40000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.048 
      ci_cons_bounds_left: 0.046 
     ci_cons_bounds_right: 0.050 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 91 percent done.
LRCH4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.089014e-01	ci left: 1.084196e-01	ci right 1.210058e-01	k: 1146	n:10000
Cons ci ratio: 1.169468e-01	ci left: 9.506351e-02	ci right 1.069701e-01	k: 1009	n:10000
KS ci ratio: 1.227051e-01	ci left: 8.689066e-02	ci right 9.834794e-02	k: 925	n:10000
LRCH4   10000 perm   2 sec   (5997 perm/sec)   p_kst 9.250000e-02   p_cons 1.009000e-01   p_joint 1.146000e-01

Joint ci ratio: 1.427146e-01	ci left: 3.375046e-02	ci right 3.898544e-02	k: 726	n:20000
Cons ci ratio: 8.394926e-02	ci left: 9.415843e-02	ci right 1.024588e-01	k: 1965	n:20000
KS ci ratio: 8.792318e-02	ci left: 8.641161e-02	ci right 9.440794e-02	k: 1807	n:20000
LRCH4   20000 perm   4 sec   (5368 perm/sec)   p_kst 9.035000e-02   p_cons 9.825000e-02   p_joint 3.630000e-02

Joint ci ratio: 1.128970e-01	ci left: 3.644823e-02	ci right 4.084169e-02	k: 1158	n:30000
Cons ci ratio: 6.898663e-02	ci left: 9.380472e-02	ci right 1.005402e-01	k: 2914	n:30000
KS ci ratio: 7.181857e-02	ci left: 8.707987e-02	ci right 9.359972e-02	k: 2709	n:30000
LRCH4   30000 perm   6 sec   (5129 perm/sec)   p_kst 9.030000e-02   p_cons 9.713333e-02   p_joint 3.860000e-02

Joint ci ratio: 1.416920e-01	ci left: 1.744327e-02	ci right 2.012724e-02	k: 750	n:40000
Cons ci ratio: 5.962267e-02	ci left: 9.460980e-02	ci right 1.004488e-01	k: 3900	n:40000
KS ci ratio: 6.238054e-02	ci left: 8.704027e-02	ci right 9.266943e-02	k: 3593	n:40000
LRCH4   40000 perm   8 sec   (4974 perm/sec)   p_kst 8.982500e-02   p_cons 9.750000e-02   p_joint 1.875000e-02

Joint ci ratio: 5.737726e-02	ci left: 8.292497e-02	ci right 8.784329e-02	k: 4268	n:50000
Cons ci ratio: 5.286843e-02	ci left: 9.643502e-02	ci right 1.016916e-01	k: 4952	n:50000
KS ci ratio: 5.571665e-02	ci left: 8.756465e-02	ci right 9.260306e-02	k: 4503	n:50000
LRCH4   50000 perm   10 sec   (4851 perm/sec)   p_kst 9.006000e-02   p_cons 9.904000e-02   p_joint 8.536000e-02

Outputting figure to mutsig2_images.part000000000098/LRCH4.2_2124_50000_0.09006_0.09904_0.08536.png
                gene_name: LRCH4
               theta_stop: 0.057 
                    nperm: 50000 
                     p_ks: 0.090 
        ci_ks_bounds_left: 0.088 
       ci_ks_bounds_right: 0.093 
                   p_cons: 0.099 
      ci_cons_bounds_left: 0.096 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.085 
     ci_joint_bounds_left: 0.083 
    ci_joint_bounds_right: 0.088 

Current progress: 93 percent done.
LRP2BP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.426411e-02	ci left: 2.097433e-01	ci right 2.260214e-01	k: 2178	n:10000
Cons ci ratio: 8.170639e-02	ci left: 1.793999e-01	ci right 1.947829e-01	k: 1870	n:10000
KS ci ratio: 1.083156e-01	ci left: 1.094933e-01	ci right 1.221314e-01	k: 1157	n:10000
LRP2BP   10000 perm   1 sec   (6856 perm/sec)   p_kst 1.157000e-01   p_cons 1.870000e-01   p_joint 2.178000e-01

Joint ci ratio: 1.038167e-02	ci left: 8.723683e-01	ci right 8.815218e-01	k: 17540	n:20000
Cons ci ratio: 5.873369e-02	ci left: 1.767729e-01	ci right 1.875197e-01	k: 3642	n:20000
KS ci ratio: 7.754189e-02	ci left: 1.088895e-01	ci right 1.177232e-01	k: 2265	n:20000
LRP2BP   20000 perm   3 sec   (6041 perm/sec)   p_kst 1.132500e-01   p_cons 1.821000e-01   p_joint 8.770000e-01

Outputting figure to mutsig2_images.part000000000098/LRP2BP.2_1076_20000_0.11325_0.1821_0.877.png
                gene_name: LRP2BP
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 95 percent done.
LRRC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.725432e-02	ci left: 6.648137e-01	ci right 6.832848e-01	k: 6741	n:10000
Cons ci ratio: 9.739590e-02	ci left: 1.325692e-01	ci right 1.462416e-01	k: 1393	n:10000
KS ci ratio: 9.173417e-02	ci left: 1.472713e-01	ci right 1.615306e-01	k: 1543	n:10000
LRRC1   10000 perm   2 sec   (6259 perm/sec)   p_kst 1.543000e-01   p_cons 1.393000e-01   p_joint 6.741000e-01

Outputting figure to mutsig2_images.part000000000098/LRRC1.2_1631_10000_0.1543_0.1393_0.6741.png
                gene_name: LRRC1
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 97 percent done.
LRRC10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.569037e-02	ci left: 4.141877e-01	ci right 4.336567e-01	k: 4239	n:10000
KS ci ratio: 2.721092e-02	ci left: 6.655187e-01	ci right 6.839794e-01	k: 6748	n:10000
LRRC10   10000 perm   1 sec   (6995 perm/sec)   p_kst 6.748000e-01   p_cons 4.239000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000098/LRRC10.2_838_10000_0.6748_0.4239_1.png
                gene_name: LRRC10
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
LRRC14B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.634260e-01	ci left: 4.993888e-02	ci right 5.892291e-02	k: 543	n:10000
Cons ci ratio: 1.466274e-01	ci left: 6.179002e-02	ci right 7.166421e-02	k: 666	n:10000
KS ci ratio: 1.198041e-01	ci left: 9.087811e-02	ci right 1.025580e-01	k: 966	n:10000
LRRC14B   10000 perm   2 sec   (6616 perm/sec)   p_kst 9.660000e-02   p_cons 6.660000e-02   p_joint 5.430000e-02

Joint ci ratio: 1.395578e-01	ci left: 3.529592e-02	ci right 4.063949e-02	k: 758	n:20000
Cons ci ratio: 1.044404e-01	ci left: 6.235342e-02	ci right 6.927346e-02	k: 1315	n:20000
KS ci ratio: 8.392559e-02	ci left: 9.420749e-02	ci right 1.025097e-01	k: 1966	n:20000
LRRC14B   20000 perm   3 sec   (5831 perm/sec)   p_kst 9.830000e-02   p_cons 6.575000e-02   p_joint 3.790000e-02

Joint ci ratio: 1.103944e-01	ci left: 3.810255e-02	ci right 4.258702e-02	k: 1209	n:30000
Cons ci ratio: 8.539170e-02	ci left: 6.282390e-02	ci right 6.846057e-02	k: 1968	n:30000
KS ci ratio: 6.770759e-02	ci left: 9.708702e-02	ci right 1.039239e-01	k: 3014	n:30000
LRRC14B   30000 perm   6 sec   (5305 perm/sec)   p_kst 1.004667e-01   p_cons 6.560000e-02   p_joint 4.030000e-02

Joint ci ratio: 1.050734e-01	ci left: 3.185552e-02	ci right 3.541260e-02	k: 1344	n:40000
Cons ci ratio: 7.389643e-02	ci left: 6.329112e-02	ci right 6.817216e-02	k: 2628	n:40000
KS ci ratio: 5.865291e-02	ci left: 9.749609e-02	ci right 1.034121e-01	k: 4017	n:40000
LRRC14B   40000 perm   8 sec   (5137 perm/sec)   p_kst 1.004250e-01   p_cons 6.570000e-02   p_joint 3.360000e-02

Joint ci ratio: 1.004802e-01	ci left: 2.805377e-02	ci right 3.104118e-02	k: 1476	n:50000
Cons ci ratio: 6.621652e-02	ci left: 6.332701e-02	ci right 6.768360e-02	k: 3274	n:50000
KS ci ratio: 5.229607e-02	ci left: 9.837200e-02	ci right 1.036744e-01	k: 5050	n:50000
LRRC14B   50000 perm   10 sec   (4996 perm/sec)   p_kst 1.010000e-01   p_cons 6.548000e-02   p_joint 2.952000e-02

Joint ci ratio: 9.155012e-02	ci left: 2.829094e-02	ci right 3.102147e-02	k: 1778	n:60000
Cons ci ratio: 6.048016e-02	ci left: 6.345093e-02	ci right 6.742456e-02	k: 3925	n:60000
KS ci ratio: 4.783713e-02	ci left: 9.823716e-02	ci right 1.030682e-01	k: 6038	n:60000
LRRC14B   60000 perm   12 sec   (4907 perm/sec)   p_kst 1.006333e-01   p_cons 6.541667e-02   p_joint 2.963333e-02

Outputting figure to mutsig2_images.part000000000098/LRRC14B.2_1553_60000_0.10063_0.065417_0.029633.png
                gene_name: LRRC14B
               theta_stop: 0.092 
                    nperm: 60000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.098 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.065 
      ci_cons_bounds_left: 0.063 
     ci_cons_bounds_right: 0.067 
                  p_joint: 0.030 
     ci_joint_bounds_left: 0.028 
    ci_joint_bounds_right: 0.031 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000098
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 98 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1425>
Subject: Job 8004239: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1425>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000099> was used as the working directory.
Started at Sun Nov 11 15:07:59 2012
Results reported at Sun Nov 11 15:21:09 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000099.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000099.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 99  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000099.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    962.31 sec.
    Max Memory :      4800 MB
    Max Swap   :      7182 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
99
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 99
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 99: processing genes 8867 - 8957
Calculating significance of each gene.
Using projection method.
8867	LRRC17	3.955672e-01
8868	LRRC18	4.213116e-01
8869	LRRC19	6.559498e-01
8870	LRRC2	2.388336e-01
8871	LRRC20	3.060810e-01
8872	LRRC23	1
8873	LRRC24	4.665992e-01
8874	LRRC25	7.116367e-02
8875	LRRC27	4.103120e-01
8876	LRRC28	4.808124e-01
8877	LRRC29	5.521098e-01
8878	LRRC3	1
8879	LRRC30	6.176116e-01
8880	LRRC31	5.664567e-01
8881	LRRC32	1.068810e-01
8882	LRRC33	5.766129e-01
8883	LRRC34	1
8884	LRRC36	9.650291e-01
8885	LRRC37A2	7.585656e-01
8886	LRRC37A3	9.838250e-01
8887	LRRC37B	9.249108e-01
8888	LRRC39	1
8889	LRRC3B	5.257514e-01
8890	LRRC4	1
8891	LRRC40	1
8892	LRRC41	8.537312e-01
8893	LRRC42	4.183909e-01
8894	LRRC43	3.652468e-01
8895	LRRC45	1
8896	LRRC46	6.377098e-01
8897	LRRC47	5.700405e-01
8898	LRRC48	5.897620e-01
8899	LRRC49	1.597919e-01
8900	LRRC4B	7.951408e-02
8901	LRRC4C	1.260880e-08
8902	LRRC50	3.332537e-01
8903	LRRC52	3.763090e-01
8904	LRRC55	5.957198e-01
8905	LRRC56	7.207353e-01
8906	LRRC57	6.095785e-01
8907	LRRC58	1.394045e-01
8908	LRRC59	1
8909	LRRC6	2.312994e-01
8910	LRRC61	1
8911	LRRC66	3.960215e-01
8912	LRRC67	1
8913	LRRC7	2.886176e-01
8914	LRRC8A	9.240181e-01
8915	LRRC8B	6.572561e-01
8916	LRRC8C	7.857131e-01
8917	LRRC8D	8.145169e-01
8918	LRRC8E	8.669248e-01
8919	LRRCC1	9.462928e-01
8920	LRRFIP1	9.478450e-01
8921	LRRFIP2	9.027000e-01
8922	LRRIQ1	9.268230e-01
8923	LRRIQ3	1
8924	LRRIQ4	1
8925	LRRK1	1
8926	LRRK2	9.994550e-01
8927	LRRN1	8.345748e-01
8928	LRRN2	3.434946e-01
8929	LRRN3	8.351317e-01
8930	LRRN4	5.220890e-01
8931	LRRN4CL	1
8932	LRRTM1	1
8933	LRRTM2	1
8934	LRRTM3	2.381964e-03
8935	LRRTM4	7.630950e-01
8936	LRSAM1	8.015564e-01
8937	LRTM1	7.755301e-01
8938	LRTM2	7.882943e-01
8939	LRTOMT	1
8940	LRWD1	7.479839e-01
8941	LSAMP	6.978494e-01
8942	LSG1	6.223953e-02
8943	LSM1	1.093801e-01
8944	LSM10	1
8945	LSM11	1
8946	LSM12	1
8947	LSM14A	1.755052e-01
8948	LSM14B	7.609466e-01
8949	LSM2	1
8950	LSM3	1
8951	LSM4	1.794808e-02
8952	LSM5	1
8953	LSM6	1
8954	LSM7	1
8955	LSMD1	1
8956	LSP1	1
8957	LSR	1
Done

Running MutSig 2:
Scatter job 99: processing genes 8867 - 8957
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
LRRC7
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.175713e-02	ci left: 5.940342e-01	ci right 6.133054e-01	k: 6037	n:10000
KS ci ratio: 1.562761e-02	ci left: 8.560029e-01	ci right 8.695850e-01	k: 8629	n:10000
LRRC7   10000 perm   3 sec   (2895 perm/sec)   p_kst 8.629000e-01   p_cons 6.037000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000099/LRRC7.31_4714_10000_0.8629_0.6037_1.png
                gene_name: LRRC7
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 2 percent done.
LRRK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.071847e-02	ci left: 6.099005e-01	ci right 6.290299e-01	k: 6195	n:10000
Cons ci ratio: 5.884004e-02	ci left: 2.982644e-01	ci right 3.164479e-01	k: 3073	n:10000
KS ci ratio: 6.772759e-03	ci left: 9.676262e-01	ci right 9.742956e-01	k: 9711	n:10000
LRRK2   10000 perm   4 sec   (2757 perm/sec)   p_kst 9.711000e-01   p_cons 3.073000e-01   p_joint 6.195000e-01

Outputting figure to mutsig2_images.part000000000099/LRRK2.23_7788_10000_0.9711_0.3073_0.6195.png
                gene_name: LRRK2
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 4 percent done.
LRRC4C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.305483e-01	ci left: 7.727681e-02	ci right 8.816773e-02	k: 826	n:10000
Cons ci ratio: 8.475817e-02	ci left: 1.686795e-01	ci right 1.837096e-01	k: 1761	n:10000
KS ci ratio: 1.385609e-01	ci left: 6.894400e-02	ci right 7.930573e-02	k: 740	n:10000
LRRC4C   10000 perm   2 sec   (4514 perm/sec)   p_kst 7.400000e-02   p_cons 1.761000e-01   p_joint 8.260000e-02

Joint ci ratio: 1.021334e-01	ci left: 6.508590e-02	ci right 7.214014e-02	k: 1371	n:20000
Cons ci ratio: 5.981036e-02	ci left: 1.714856e-01	ci right 1.821085e-01	k: 3535	n:20000
KS ci ratio: 9.855520e-02	ci left: 6.967630e-02	ci right 7.694833e-02	k: 1465	n:20000
LRRC4C   20000 perm   5 sec   (4080 perm/sec)   p_kst 7.325000e-02   p_cons 1.767500e-01   p_joint 6.855000e-02

Joint ci ratio: 7.951853e-02	ci left: 7.194593e-02	ci right 7.793670e-02	k: 2247	n:30000
Cons ci ratio: 4.925308e-02	ci left: 1.700222e-01	ci right 1.786410e-01	k: 5229	n:30000
KS ci ratio: 8.051006e-02	ci left: 7.027739e-02	ci right 7.620558e-02	k: 2196	n:30000
LRRC4C   30000 perm   8 sec   (3907 perm/sec)   p_kst 7.320000e-02   p_cons 1.743000e-01   p_joint 7.490000e-02

Outputting figure to mutsig2_images.part000000000099/LRRC4C.19_1927_30000_0.0732_0.1743_0.0749.png
                gene_name: LRRC4C
               theta_stop: 0.081 
                    nperm: 30000 
                     p_ks: 0.073 
        ci_ks_bounds_left: 0.070 
       ci_ks_bounds_right: 0.076 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.075 
     ci_joint_bounds_left: 0.072 
    ci_joint_bounds_right: 0.078 

Current progress: 6 percent done.
LRRTM4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.304386e-02	ci left: 2.153664e-01	ci right 2.317949e-01	k: 2235	n:10000
Cons ci ratio: 8.423637e-02	ci left: 1.704491e-01	ci right 1.855389e-01	k: 1779	n:10000
KS ci ratio: 6.913041e-02	ci left: 2.348172e-01	ci right 2.517326e-01	k: 2432	n:10000
LRRTM4   10000 perm   2 sec   (4741 perm/sec)   p_kst 2.432000e-01   p_cons 1.779000e-01   p_joint 2.235000e-01

Outputting figure to mutsig2_images.part000000000099/LRRTM4.12_1791_10000_0.2432_0.1779_0.2235.png
                gene_name: LRRTM4
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 8 percent done.
LRRTM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.930400e-02	ci left: 4.887518e-01	ci right 5.084490e-01	k: 4986	n:10000
Cons ci ratio: 7.507648e-03	ci left: 9.608952e-01	ci right 9.682310e-01	k: 9647	n:10000
KS ci ratio: 5.890920e-02	ci left: 2.977686e-01	ci right 3.159440e-01	k: 3068	n:10000
LRRTM1   10000 perm   2 sec   (4641 perm/sec)   p_kst 3.068000e-01   p_cons 9.647000e-01   p_joint 4.986000e-01

Outputting figure to mutsig2_images.part000000000099/LRRTM1.10_1573_10000_0.3068_0.9647_0.4986.png
                gene_name: LRRTM1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 10 percent done.
LRRC66
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.215838e-02	ci left: 9.065853e-01	ci right 9.177733e-01	k: 9123	n:10000
Cons ci ratio: 1.251928e-02	ci left: 9.016521e-01	ci right 9.131093e-01	k: 9075	n:10000
KS ci ratio: 2.872461e-02	ci left: 6.411625e-01	ci right 6.599498e-01	k: 6506	n:10000
LRRC66   10000 perm   2 sec   (4840 perm/sec)   p_kst 6.506000e-01   p_cons 9.075000e-01   p_joint 9.123000e-01

Outputting figure to mutsig2_images.part000000000099/LRRC66.8_2659_10000_0.6506_0.9075_0.9123.png
                gene_name: LRRC66
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 12 percent done.
LRRIQ1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.480552e-02	ci left: 8.685630e-01	ci right 8.816176e-01	k: 8752	n:10000
Cons ci ratio: 2.192571e-02	ci left: 7.532242e-01	ci right 7.700231e-01	k: 7617	n:10000
KS ci ratio: 2.542302e-02	ci left: 6.948436e-01	ci right 7.128375e-01	k: 7039	n:10000
LRRIQ1   10000 perm   3 sec   (3614 perm/sec)   p_kst 7.039000e-01   p_cons 7.617000e-01   p_joint 8.752000e-01

Outputting figure to mutsig2_images.part000000000099/LRRIQ1.8_5277_10000_0.7039_0.7617_0.8752.png
                gene_name: LRRIQ1
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 14 percent done.
LRRTM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.296881e-01	ci left: 2.504340e-02	ci right 3.163520e-02	k: 282	n:10000
Cons ci ratio: 3.930400e-02	ci left: 4.887518e-01	ci right 5.084490e-01	k: 4986	n:10000
KS ci ratio: 5.529567e-01	ci left: 3.627180e-03	ci right 6.472945e-03	k: 49	n:10000
LRRTM3   10000 perm   2 sec   (4841 perm/sec)   p_kst 4.900000e-03   p_cons 4.986000e-01   p_joint 2.820000e-02

Joint ci ratio: 1.576109e-01	ci left: 2.763127e-02	ci right 3.240667e-02	k: 599	n:20000
Cons ci ratio: 2.858365e-02	ci left: 4.776514e-01	ci right 4.915530e-01	k: 9692	n:20000
KS ci ratio: 3.871372e-01	ci left: 4.115134e-03	ci right 6.132872e-03	k: 101	n:20000
LRRTM3   20000 perm   4 sec   (4477 perm/sec)   p_kst 5.050000e-03   p_cons 4.846000e-01   p_joint 2.995000e-02

Joint ci ratio: 1.745493e-01	ci left: 1.508879e-02	ci right 1.800592e-02	k: 495	n:30000
Cons ci ratio: 2.244619e-02	ci left: 4.984254e-01	ci right 5.097738e-01	k: 15123	n:30000
KS ci ratio: 3.015816e-01	ci left: 4.756245e-03	ci right 6.474963e-03	k: 167	n:30000
LRRTM3   30000 perm   7 sec   (4307 perm/sec)   p_kst 5.566667e-03   p_cons 5.041000e-01   p_joint 1.650000e-02

Joint ci ratio: 1.325399e-01	ci left: 1.997997e-02	ci right 2.284010e-02	k: 855	n:40000
Cons ci ratio: 1.941590e-02	ci left: 4.997876e-01	ci right 5.096117e-01	k: 20188	n:40000
KS ci ratio: 2.533357e-01	ci left: 5.196454e-03	ci right 6.726605e-03	k: 237	n:40000
LRRTM3   40000 perm   10 sec   (4209 perm/sec)   p_kst 5.925000e-03   p_cons 5.047000e-01   p_joint 2.137500e-02

Joint ci ratio: 1.415808e-01	ci left: 1.402999e-02	ci right 1.618684e-02	k: 754	n:50000
Cons ci ratio: 1.740518e-02	ci left: 4.991874e-01	ci right 5.079722e-01	k: 25179	n:50000
KS ci ratio: 2.279437e-01	ci left: 5.209804e-03	ci right 6.568527e-03	k: 293	n:50000
LRRTM3   50000 perm   12 sec   (4128 perm/sec)   p_kst 5.860000e-03   p_cons 5.035800e-01   p_joint 1.508000e-02

Joint ci ratio: 1.384562e-01	ci left: 1.226986e-02	ci right 1.411101e-02	k: 790	n:60000
Cons ci ratio: 1.586167e-02	ci left: 5.004243e-01	ci right 5.084420e-01	k: 30266	n:60000
KS ci ratio: 2.062681e-01	ci left: 5.366103e-03	ci right 6.615741e-03	k: 358	n:60000
LRRTM3   60000 perm   15 sec   (4026 perm/sec)   p_kst 5.966667e-03   p_cons 5.044333e-01   p_joint 1.316667e-02

Joint ci ratio: 1.131489e-01	ci left: 1.590251e-02	ci right 1.782356e-02	k: 1179	n:70000
Cons ci ratio: 1.467601e-02	ci left: 5.010318e-01	ci right 5.084536e-01	k: 35332	n:70000
KS ci ratio: 1.902452e-01	ci left: 5.454925e-03	ci right 6.615166e-03	k: 421	n:70000
LRRTM3   70000 perm   18 sec   (3962 perm/sec)   p_kst 6.014286e-03   p_cons 5.047429e-01   p_joint 1.684286e-02

Joint ci ratio: 1.142570e-01	ci left: 1.367089e-02	ci right 1.533959e-02	k: 1159	n:80000
Cons ci ratio: 1.374414e-02	ci left: 5.006915e-01	ci right 5.076332e-01	k: 40333	n:80000
KS ci ratio: 1.763623e-01	ci left: 5.596065e-03	ci right 6.690214e-03	k: 490	n:80000
LRRTM3   80000 perm   21 sec   (3883 perm/sec)   p_kst 6.125000e-03   p_cons 5.041625e-01   p_joint 1.448750e-02

Joint ci ratio: 1.083562e-01	ci left: 1.355610e-02	ci right 1.511987e-02	k: 1289	n:90000
Cons ci ratio: 1.295600e-02	ci left: 5.009723e-01	ci right 5.075163e-01	k: 45382	n:90000
KS ci ratio: 1.649850e-01	ci left: 5.718892e-03	ci right 6.757763e-03	k: 560	n:90000
LRRTM3   90000 perm   24 sec   (3808 perm/sec)   p_kst 6.222222e-03   p_cons 5.042444e-01   p_joint 1.432222e-02

Joint ci ratio: 1.081805e-01	ci left: 1.225842e-02	ci right 1.367004e-02	k: 1295	n:100000
Cons ci ratio: 1.230135e-02	ci left: 5.007260e-01	ci right 5.069337e-01	k: 50383	n:100000
KS ci ratio: 1.577111e-01	ci left: 5.655594e-03	ci right 6.633383e-03	k: 613	n:100000
LRRTM3   100000 perm   27 sec   (3751 perm/sec)   p_kst 6.130000e-03   p_cons 5.038300e-01   p_joint 1.295000e-02

Joint ci ratio: 9.931961e-02	ci left: 1.326964e-02	ci right 1.466525e-02	k: 1535	n:110000
Cons ci ratio: 1.174304e-02	ci left: 5.002680e-01	ci right 5.061864e-01	k: 55355	n:110000
KS ci ratio: 1.510937e-01	ci left: 5.622129e-03	ci right 6.549657e-03	k: 668	n:110000
LRRTM3   110000 perm   30 sec   (3660 perm/sec)   p_kst 6.072727e-03   p_cons 5.032273e-01   p_joint 1.395455e-02

Joint ci ratio: 9.715961e-02	ci left: 1.273266e-02	ci right 1.404101e-02	k: 1605	n:120000
Cons ci ratio: 1.148351e-02	ci left: 4.898174e-01	ci right 4.954830e-01	k: 59118	n:120000
KS ci ratio: 1.446431e-01	ci left: 5.643153e-03	ci right 6.530971e-03	k: 729	n:120000
LRRTM3   120000 perm   33 sec   (3583 perm/sec)   p_kst 6.075000e-03   p_cons 4.926500e-01   p_joint 1.337500e-02

Joint ci ratio: 9.272424e-02	ci left: 1.293231e-02	ci right 1.419722e-02	k: 1762	n:130000
Cons ci ratio: 1.102223e-02	ci left: 4.904171e-01	ci right 4.958602e-01	k: 64108	n:130000
KS ci ratio: 1.379054e-01	ci left: 5.750784e-03	ci right 6.609929e-03	k: 802	n:130000
LRRTM3   130000 perm   37 sec   (3526 perm/sec)   p_kst 6.169231e-03   p_cons 4.931385e-01   p_joint 1.355385e-02

Joint ci ratio: 9.314505e-02	ci left: 1.191061e-02	ci right 1.308114e-02	k: 1748	n:140000
Cons ci ratio: 1.060968e-02	ci left: 4.910634e-01	ci right 4.963083e-01	k: 69116	n:140000
KS ci ratio: 1.326399e-01	ci left: 5.788598e-03	ci right 6.617768e-03	k: 867	n:140000
LRRTM3   140000 perm   40 sec   (3476 perm/sec)   p_kst 6.192857e-03   p_cons 4.936857e-01   p_joint 1.248571e-02

Joint ci ratio: 8.512543e-02	ci left: 1.334623e-02	ci right 1.453933e-02	k: 2090	n:150000
Cons ci ratio: 1.024977e-02	ci left: 4.911600e-01	ci right 4.962269e-01	k: 74054	n:150000
KS ci ratio: 1.287708e-01	ci left: 5.744463e-03	ci right 6.541474e-03	k: 920	n:150000
LRRTM3   150000 perm   44 sec   (3429 perm/sec)   p_kst 6.133333e-03   p_cons 4.936933e-01   p_joint 1.393333e-02

Joint ci ratio: 7.875041e-02	ci left: 1.464908e-02	ci right 1.585608e-02	k: 2439	n:160000
Cons ci ratio: 9.941683e-03	ci left: 4.903661e-01	ci right 4.952717e-01	k: 78851	n:160000
KS ci ratio: 1.252216e-01	ci left: 5.706154e-03	ci right 6.474409e-03	k: 973	n:160000
LRRTM3   160000 perm   47 sec   (3383 perm/sec)   p_kst 6.081250e-03   p_cons 4.928188e-01   p_joint 1.524375e-02

Joint ci ratio: 7.015307e-02	ci left: 1.740220e-02	ci right 1.867314e-02	k: 3065	n:170000
Cons ci ratio: 9.637388e-03	ci left: 4.908265e-01	ci right 4.955855e-01	k: 83845	n:170000
KS ci ratio: 1.242853e-01	ci left: 5.455935e-03	ci right 6.184602e-03	k: 988	n:170000
LRRTM3   170000 perm   51 sec   (3335 perm/sec)   p_kst 5.811765e-03   p_cons 4.932059e-01   p_joint 1.802941e-02

Joint ci ratio: 6.875415e-02	ci left: 1.712862e-02	ci right 1.835365e-02	k: 3192	n:180000
Cons ci ratio: 9.359938e-03	ci left: 4.912099e-01	ci right 4.958347e-01	k: 88834	n:180000
KS ci ratio: 1.212020e-01	ci left: 5.427457e-03	ci right 6.133048e-03	k: 1039	n:180000
LRRTM3   180000 perm   55 sec   (3286 perm/sec)   p_kst 5.772222e-03   p_cons 4.935222e-01   p_joint 1.773333e-02

Joint ci ratio: 7.272008e-02	ci left: 1.451508e-02	ci right 1.561558e-02	k: 2861	n:190000
Cons ci ratio: 9.107539e-03	ci left: 4.914231e-01	ci right 4.959245e-01	k: 93798	n:190000
KS ci ratio: 1.176882e-01	ci left: 5.463480e-03	ci right 6.151730e-03	k: 1102	n:190000
LRRTM3   190000 perm   59 sec   (3245 perm/sec)   p_kst 5.800000e-03   p_cons 4.936737e-01   p_joint 1.505789e-02

Joint ci ratio: 7.162630e-02	ci left: 1.422622e-02	ci right 1.528792e-02	k: 2950	n:200000
Cons ci ratio: 8.878421e-03	ci left: 4.913965e-01	ci right 4.957837e-01	k: 98718	n:200000
KS ci ratio: 1.145126e-01	ci left: 5.491308e-03	ci right 6.163136e-03	k: 1164	n:200000
LRRTM3   200000 perm   62 sec   (3205 perm/sec)   p_kst 5.820000e-03   p_cons 4.935900e-01   p_joint 1.475000e-02

Joint ci ratio: 7.166416e-02	ci left: 1.354393e-02	ci right 1.455526e-02	k: 2949	n:210000
Cons ci ratio: 8.658259e-03	ci left: 4.918070e-01	ci right 4.960884e-01	k: 103729	n:210000
KS ci ratio: 1.117185e-01	ci left: 5.502823e-03	ci right 6.158550e-03	k: 1223	n:210000
LRRTM3   210000 perm   66 sec   (3164 perm/sec)   p_kst 5.823810e-03   p_cons 4.939476e-01   p_joint 1.404286e-02

Joint ci ratio: 7.012562e-02	ci left: 1.351319e-02	ci right 1.449968e-02	k: 3080	n:220000
Cons ci ratio: 8.464232e-03	ci left: 4.915587e-01	ci right 4.957415e-01	k: 108603	n:220000
KS ci ratio: 1.089912e-01	ci left: 5.526738e-03	ci right 6.168205e-03	k: 1285	n:220000
LRRTM3   220000 perm   70 sec   (3122 perm/sec)   p_kst 5.840909e-03   p_cons 4.936500e-01   p_joint 1.400000e-02

Joint ci ratio: 7.010117e-02	ci left: 1.294261e-02	ci right 1.388710e-02	k: 3084	n:230000
Cons ci ratio: 8.274406e-03	ci left: 4.918329e-01	ci right 4.959238e-01	k: 113592	n:230000
KS ci ratio: 1.069343e-01	ci left: 5.497961e-03	ci right 6.123287e-03	k: 1335	n:230000
LRRTM3   230000 perm   75 sec   (3080 perm/sec)   p_kst 5.804348e-03   p_cons 4.938783e-01   p_joint 1.340870e-02

Joint ci ratio: 6.984631e-02	ci left: 1.250148e-02	ci right 1.341033e-02	k: 3108	n:240000
Cons ci ratio: 8.097746e-03	ci left: 4.920269e-01	ci right 4.960315e-01	k: 118567	n:240000
KS ci ratio: 1.045729e-01	ci left: 5.516326e-03	ci right 6.129034e-03	k: 1396	n:240000
LRRTM3   240000 perm   79 sec   (3040 perm/sec)   p_kst 5.816667e-03   p_cons 4.940292e-01   p_joint 1.295000e-02

Joint ci ratio: 6.916959e-02	ci left: 1.224506e-02	ci right 1.312629e-02	k: 3170	n:250000
Cons ci ratio: 7.935873e-03	ci left: 4.919583e-01	ci right 4.958819e-01	k: 123480	n:250000
KS ci ratio: 1.028593e-01	ci left: 5.478791e-03	ci right 6.076755e-03	k: 1443	n:250000
LRRTM3   250000 perm   83 sec   (3000 perm/sec)   p_kst 5.772000e-03   p_cons 4.939200e-01   p_joint 1.268000e-02

Joint ci ratio: 7.012165e-02	ci left: 1.146026e-02	ci right 1.229683e-02	k: 3087	n:260000
Cons ci ratio: 7.784053e-03	ci left: 4.918495e-01	ci right 4.956968e-01	k: 128381	n:260000
KS ci ratio: 1.004510e-01	ci left: 5.530461e-03	ci right 6.119098e-03	k: 1513	n:260000
LRRTM3   260000 perm   88 sec   (2961 perm/sec)   p_kst 5.819231e-03   p_cons 4.937731e-01   p_joint 1.187308e-02

Joint ci ratio: 6.818704e-02	ci left: 1.168007e-02	ci right 1.250823e-02	k: 3264	n:270000
Cons ci ratio: 7.630951e-03	ci left: 4.923827e-01	ci right 4.961581e-01	k: 133453	n:270000
KS ci ratio: 9.870690e-02	ci left: 5.520647e-03	ci right 6.097446e-03	k: 1567	n:270000
LRRTM3   270000 perm   92 sec   (2924 perm/sec)   p_kst 5.803704e-03   p_cons 4.942704e-01   p_joint 1.208889e-02

Outputting figure to mutsig2_images.part000000000099/LRRTM3.8_1758_270000_0.0058037_0.49427_0.012089.png
                gene_name: LRRTM3
               theta_stop: 0.099 
                    nperm: 270000 
                     p_ks: 0.0058 
        ci_ks_bounds_left: 0.0055 
       ci_ks_bounds_right: 0.0061 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.012 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.013 

Current progress: 16 percent done.
LRRC33
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.762296e-02	ci left: 3.941625e-01	ci right 4.134936e-01	k: 4038	n:10000
Cons ci ratio: 2.039137e-03	ci left: 9.961927e-01	ci right 9.983009e-01	k: 9974	n:10000
KS ci ratio: 7.602909e-02	ci left: 2.019537e-01	ci right 2.180156e-01	k: 2099	n:10000
LRRC33   10000 perm   2 sec   (4848 perm/sec)   p_kst 2.099000e-01   p_cons 9.974000e-01   p_joint 4.038000e-01

Outputting figure to mutsig2_images.part000000000099/LRRC33.7_2087_10000_0.2099_0.9974_0.4038.png
                gene_name: LRRC33
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 18 percent done.
LRRIQ3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.993416e-02	ci left: 3.716666e-01	ci right 3.908027e-01	k: 3812	n:10000
Cons ci ratio: 1.254876e-01	ci left: 8.329513e-02	ci right 9.454569e-02	k: 888	n:10000
KS ci ratio: 2.432937e-02	ci left: 7.130044e-01	ci right 7.306662e-01	k: 7219	n:10000
LRRIQ3   10000 perm   2 sec   (5370 perm/sec)   p_kst 7.219000e-01   p_cons 8.880000e-02   p_joint 3.812000e-01

Joint ci ratio: 3.872274e-02	ci left: 3.321896e-01	ci right 3.453573e-01	k: 6775	n:20000
Cons ci ratio: 8.884463e-02	ci left: 8.474573e-02	ci right 9.267431e-02	k: 1773	n:20000
KS ci ratio: 1.706677e-02	ci left: 7.188550e-01	ci right 7.312795e-01	k: 14502	n:20000
LRRIQ3   20000 perm   4 sec   (4737 perm/sec)   p_kst 7.251000e-01   p_cons 8.865000e-02   p_joint 3.387500e-01

Outputting figure to mutsig2_images.part000000000099/LRRIQ3.7_1903_20000_0.7251_0.08865_0.33875.png
                gene_name: LRRIQ3
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.089 
      ci_cons_bounds_left: 0.085 
     ci_cons_bounds_right: 0.093 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 20 percent done.
LRRN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.832224e-02	ci left: 3.871924e-01	ci right 4.064677e-01	k: 3968	n:10000
Cons ci ratio: 6.439016e-02	ci left: 2.616134e-01	ci right 2.791206e-01	k: 2703	n:10000
KS ci ratio: 6.264161e-02	ci left: 2.725021e-01	ci right 2.902255e-01	k: 2813	n:10000
LRRN3   10000 perm   2 sec   (5033 perm/sec)   p_kst 2.813000e-01   p_cons 2.703000e-01   p_joint 3.968000e-01

Outputting figure to mutsig2_images.part000000000099/LRRN3.7_2131_10000_0.2813_0.2703_0.3968.png
                gene_name: LRRN3
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 22 percent done.
LRRC32
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.430079e-02	ci left: 5.565186e-01	ci right 5.760428e-01	k: 5663	n:10000
Cons ci ratio: 7.194651e-02	ci left: 2.205969e-01	ci right 2.371614e-01	k: 2288	n:10000
KS ci ratio: 2.646388e-02	ci left: 6.777071e-01	ci right 6.959839e-01	k: 6869	n:10000
LRRC32   10000 perm   2 sec   (5283 perm/sec)   p_kst 6.869000e-01   p_cons 2.288000e-01   p_joint 5.663000e-01

Outputting figure to mutsig2_images.part000000000099/LRRC32.6_1997_10000_0.6869_0.2288_0.5663.png
                gene_name: LRRC32
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 24 percent done.
LRRC4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.636922e-02	ci left: 1.633724e-01	ci right 1.782199e-01	k: 1707	n:10000
Cons ci ratio: 1.125544e-02	ci left: 9.185285e-01	ci right 9.290230e-01	k: 9239	n:10000
KS ci ratio: 1.165621e-01	ci left: 9.564778e-02	ci right 1.075854e-01	k: 1015	n:10000
LRRC4B   10000 perm   2 sec   (5389 perm/sec)   p_kst 1.015000e-01   p_cons 9.239000e-01   p_joint 1.707000e-01

Joint ci ratio: 6.851394e-02	ci left: 1.358100e-01	ci right 1.454948e-01	k: 2812	n:20000
Cons ci ratio: 7.971127e-03	ci left: 9.198827e-01	ci right 9.272936e-01	k: 18473	n:20000
KS ci ratio: 8.557586e-02	ci left: 9.087233e-02	ci right 9.904586e-02	k: 1898	n:20000
LRRC4B   20000 perm   4 sec   (4680 perm/sec)   p_kst 9.490000e-02   p_cons 9.236500e-01   p_joint 1.406000e-01

Outputting figure to mutsig2_images.part000000000099/LRRC4B.6_2150_20000_0.0949_0.92365_0.1406.png
                gene_name: LRRC4B
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.095 
        ci_ks_bounds_left: 0.091 
       ci_ks_bounds_right: 0.099 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 25 percent done.
LRRK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.600187e-02	ci left: 8.501887e-01	ci right 8.640026e-01	k: 8572	n:10000
KS ci ratio: 3.594278e-02	ci left: 5.333754e-01	ci right 5.529994e-01	k: 5432	n:10000
LRRK1   10000 perm   3 sec   (3611 perm/sec)   p_kst 5.432000e-01   p_cons 8.572000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000099/LRRK1.6_6180_10000_0.5432_0.8572_1.png
                gene_name: LRRK1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 27 percent done.
LSG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.734068e-02	ci left: 3.092734e-01	ci right 3.276325e-01	k: 3184	n:10000
Cons ci ratio: 6.408154e-02	ci left: 2.634937e-01	ci right 2.810391e-01	k: 2722	n:10000
KS ci ratio: 7.122053e-02	ci left: 2.241507e-01	ci right 2.408054e-01	k: 2324	n:10000
LSG1   10000 perm   2 sec   (5154 perm/sec)   p_kst 2.324000e-01   p_cons 2.722000e-01   p_joint 3.184000e-01

Outputting figure to mutsig2_images.part000000000099/LSG1.6_2033_10000_0.2324_0.2722_0.3184.png
                gene_name: LSG1
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 29 percent done.
LRRC49
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.634707e-02	ci left: 6.796217e-01	ci right 6.978683e-01	k: 6888	n:10000
KS ci ratio: 2.240852e-02	ci left: 7.451322e-01	ci right 7.621198e-01	k: 7537	n:10000
LRRC49   10000 perm   2 sec   (4777 perm/sec)   p_kst 7.537000e-01   p_cons 6.888000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000099/LRRC49.5_2125_10000_0.7537_0.6888_1.png
                gene_name: LRRC49
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 31 percent done.
LRRC55
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.684359e-02	ci left: 2.472706e-01	ci right 2.644719e-01	k: 2558	n:10000
Cons ci ratio: 3.830297e-02	ci left: 5.016506e-01	ci right 5.213427e-01	k: 5115	n:10000
KS ci ratio: 8.149215e-02	ci left: 1.801871e-01	ci right 1.955952e-01	k: 1878	n:10000
LRRC55   10000 perm   2 sec   (6324 perm/sec)   p_kst 1.878000e-01   p_cons 5.115000e-01   p_joint 2.558000e-01

Outputting figure to mutsig2_images.part000000000099/LRRC55.5_1034_10000_0.1878_0.5115_0.2558.png
                gene_name: LRRC55
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 33 percent done.
LRRCC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.040908e-01	ci left: 1.176982e-01	ci right 1.307216e-01	k: 1241	n:10000
Cons ci ratio: 9.215805e-02	ci left: 1.460943e-01	ci right 1.603084e-01	k: 1531	n:10000
KS ci ratio: 1.300347e-01	ci left: 7.785885e-02	ci right 8.878533e-02	k: 832	n:10000
LRRCC1   10000 perm   2 sec   (4662 perm/sec)   p_kst 8.320000e-02   p_cons 1.531000e-01   p_joint 1.241000e-01

Joint ci ratio: 9.765953e-02	ci left: 7.089790e-02	ci right 7.822636e-02	k: 1490	n:20000
Cons ci ratio: 6.553325e-02	ci left: 1.467542e-01	ci right 1.567472e-01	k: 3034	n:20000
KS ci ratio: 9.007588e-02	ci left: 8.259055e-02	ci right 9.043015e-02	k: 1729	n:20000
LRRCC1   20000 perm   5 sec   (4214 perm/sec)   p_kst 8.645000e-02   p_cons 1.517000e-01   p_joint 7.450000e-02

Outputting figure to mutsig2_images.part000000000099/LRRCC1.5_3175_20000_0.08645_0.1517_0.0745.png
                gene_name: LRRCC1
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.086 
        ci_ks_bounds_left: 0.083 
       ci_ks_bounds_right: 0.090 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.074 
     ci_joint_bounds_left: 0.071 
    ci_joint_bounds_right: 0.078 

Current progress: 35 percent done.
LRRC43
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.854796e-02	ci left: 6.439792e-01	ci right 6.627314e-01	k: 6534	n:10000
Cons ci ratio: 6.883135e-02	ci left: 2.363980e-01	ci right 2.533508e-01	k: 2448	n:10000
KS ci ratio: 2.146053e-02	ci left: 7.610165e-01	ci right 7.776263e-01	k: 7694	n:10000
LRRC43   10000 perm   2 sec   (5747 perm/sec)   p_kst 7.694000e-01   p_cons 2.448000e-01   p_joint 6.534000e-01

Outputting figure to mutsig2_images.part000000000099/LRRC43.4_2019_10000_0.7694_0.2448_0.6534.png
                gene_name: LRRC43
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 37 percent done.
LRRC50
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.950999e-01	ci left: 3.500453e-02	ci right 4.266711e-02	k: 387	n:10000
Cons ci ratio: 1.279515e-01	ci left: 8.028489e-02	ci right 9.135778e-02	k: 857	n:10000
KS ci ratio: 1.818499e-01	ci left: 4.035041e-02	ci right 4.851765e-02	k: 443	n:10000
LRRC50   10000 perm   2 sec   (5137 perm/sec)   p_kst 4.430000e-02   p_cons 8.570000e-02   p_joint 3.870000e-02

Joint ci ratio: 1.420067e-01	ci left: 3.408842e-02	ci right 3.934738e-02	k: 733	n:20000
Cons ci ratio: 8.967923e-02	ci left: 8.327621e-02	ci right 9.114429e-02	k: 1743	n:20000
KS ci ratio: 1.307624e-01	ci left: 4.018178e-02	ci right 4.585205e-02	k: 859	n:20000
LRRC50   20000 perm   4 sec   (4697 perm/sec)   p_kst 4.295000e-02   p_cons 8.715000e-02   p_joint 3.665000e-02

Joint ci ratio: 1.080879e-01	ci left: 3.972548e-02	ci right 4.429709e-02	k: 1259	n:30000
Cons ci ratio: 7.612932e-02	ci left: 7.810041e-02	ci right 8.431432e-02	k: 2435	n:30000
KS ci ratio: 1.081327e-01	ci left: 3.969301e-02	ci right 4.426290e-02	k: 1258	n:30000
LRRC50   30000 perm   7 sec   (4484 perm/sec)   p_kst 4.193333e-02   p_cons 8.116667e-02   p_joint 4.196667e-02

Joint ci ratio: 9.443162e-02	ci left: 3.934643e-02	ci right 4.327052e-02	k: 1651	n:40000
Cons ci ratio: 6.597438e-02	ci left: 7.841812e-02	ci right 8.379288e-02	k: 3243	n:40000
KS ci ratio: 9.452118e-02	ci left: 3.927313e-02	ci right 4.319383e-02	k: 1648	n:40000
LRRC50   40000 perm   9 sec   (4349 perm/sec)   p_kst 4.120000e-02   p_cons 8.107500e-02   p_joint 4.127500e-02

Outputting figure to mutsig2_images.part000000000099/LRRC50.4_2226_40000_0.0412_0.081075_0.041275.png
                gene_name: LRRC50
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.041 
        ci_ks_bounds_left: 0.039 
       ci_ks_bounds_right: 0.043 
                   p_cons: 0.081 
      ci_cons_bounds_left: 0.078 
     ci_cons_bounds_right: 0.084 
                  p_joint: 0.041 
     ci_joint_bounds_left: 0.039 
    ci_joint_bounds_right: 0.043 

Current progress: 39 percent done.
LRRN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.557831e-02	ci left: 4.153838e-01	ci right 4.348599e-01	k: 4251	n:10000
Cons ci ratio: 1.578567e-02	ci left: 8.535544e-01	ci right 8.672349e-01	k: 8605	n:10000
KS ci ratio: 7.353110e-02	ci left: 2.130972e-01	ci right 2.294655e-01	k: 2212	n:10000
LRRN2   10000 perm   2 sec   (5215 perm/sec)   p_kst 2.212000e-01   p_cons 8.605000e-01   p_joint 4.251000e-01

Outputting figure to mutsig2_images.part000000000099/LRRN2.4_2146_10000_0.2212_0.8605_0.4251.png
                gene_name: LRRN2
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.43 

Current progress: 41 percent done.
LRRC25
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.777013e-01	ci left: 4.226411e-02	ci right 5.060268e-02	k: 463	n:10000
Cons ci ratio: 2.177074e-01	ci left: 2.797424e-02	ci right 3.490226e-02	k: 313	n:10000
KS ci ratio: 4.657119e-02	ci left: 4.049202e-01	ci right 4.243295e-01	k: 4146	n:10000
LRRC25   10000 perm   1 sec   (6775 perm/sec)   p_kst 4.146000e-01   p_cons 3.130000e-02   p_joint 4.630000e-02

Joint ci ratio: 7.661082e-02	ci left: 1.112981e-01	ci right 1.202140e-01	k: 2314	n:20000
Cons ci ratio: 1.582921e-01	ci left: 2.739088e-02	ci right 3.214714e-02	k: 594	n:20000
KS ci ratio: 3.327542e-02	ci left: 4.027732e-01	ci right 4.164531e-01	k: 8192	n:20000
LRRC25   20000 perm   3 sec   (5878 perm/sec)   p_kst 4.096000e-01   p_cons 2.970000e-02   p_joint 1.157000e-01

Joint ci ratio: 9.878843e-02	ci left: 4.739802e-02	ci right 5.235628e-02	k: 1495	n:30000
Cons ci ratio: 1.282497e-01	ci left: 2.826008e-02	ci right 3.216494e-02	k: 905	n:30000
KS ci ratio: 2.735446e-02	ci left: 4.007682e-01	ci right 4.119166e-01	k: 12190	n:30000
LRRC25   30000 perm   5 sec   (5494 perm/sec)   p_kst 4.063333e-01   p_cons 3.016667e-02   p_joint 4.983333e-02

Joint ci ratio: 5.588641e-02	ci left: 1.064558e-01	ci right 1.126010e-01	k: 4380	n:40000
Cons ci ratio: 1.112104e-01	ci left: 2.844726e-02	ci right 3.182141e-02	k: 1204	n:40000
KS ci ratio: 2.368799e-02	ci left: 4.015562e-01	ci right 4.112074e-01	k: 16255	n:40000
LRRC25   40000 perm   8 sec   (5288 perm/sec)   p_kst 4.063750e-01   p_cons 3.010000e-02   p_joint 1.095000e-01

Joint ci ratio: 4.393960e-02	ci left: 1.342944e-01	ci right 1.403477e-01	k: 6865	n:50000
Cons ci ratio: 9.920698e-02	ci left: 2.877582e-02	ci right 3.179904e-02	k: 1513	n:50000
KS ci ratio: 2.117575e-02	ci left: 4.023300e-01	ci right 4.109609e-01	k: 20332	n:50000
LRRC25   50000 perm   10 sec   (5123 perm/sec)   p_kst 4.066400e-01   p_cons 3.026000e-02   p_joint 1.373000e-01

Outputting figure to mutsig2_images.part000000000099/LRRC25.2_926_50000_0.40664_0.03026_0.1373.png
                gene_name: LRRC25
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.030 
      ci_cons_bounds_left: 0.029 
     ci_cons_bounds_right: 0.032 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 43 percent done.
LRRC27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.788726e-02	ci left: 1.941685e-01	ci right 2.100054e-01	k: 2020	n:10000
Cons ci ratio: 2.403880e-02	ci left: 7.178502e-01	ci right 7.354176e-01	k: 7267	n:10000
KS ci ratio: 1.680497e-01	ci left: 4.724933e-02	ci right 5.601420e-02	k: 515	n:10000
LRRC27   10000 perm   2 sec   (5941 perm/sec)   p_kst 5.150000e-02   p_cons 7.267000e-01   p_joint 2.020000e-01

Joint ci ratio: 5.904105e-02	ci left: 1.752409e-01	ci right 1.859521e-01	k: 3611	n:20000
Cons ci ratio: 1.717810e-02	ci left: 7.162374e-01	ci right 7.286979e-01	k: 14450	n:20000
KS ci ratio: 1.161276e-01	ci left: 5.076176e-02	ci right 5.706873e-02	k: 1077	n:20000
LRRC27   20000 perm   4 sec   (5015 perm/sec)   p_kst 5.385000e-02   p_cons 7.225000e-01   p_joint 1.805500e-01

Joint ci ratio: 5.075271e-02	ci left: 1.616405e-01	ci right 1.700910e-01	k: 4975	n:30000
Cons ci ratio: 1.401779e-02	ci left: 7.176297e-01	ci right 7.277938e-01	k: 21682	n:30000
KS ci ratio: 9.497382e-02	ci left: 5.117578e-02	ci right 5.631108e-02	k: 1611	n:30000
LRRC27   30000 perm   6 sec   (4691 perm/sec)   p_kst 5.370000e-02   p_cons 7.227333e-01   p_joint 1.658333e-01

Outputting figure to mutsig2_images.part000000000099/LRRC27.3_1815_30000_0.0537_0.72273_0.16583.png
                gene_name: LRRC27
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.054 
        ci_ks_bounds_left: 0.051 
       ci_ks_bounds_right: 0.056 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 45 percent done.
LRRC30
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.506102e-02	ci left: 5.456958e-01	ci right 5.652719e-01	k: 5555	n:10000
Cons ci ratio: 5.497068e-02	ci left: 3.277341e-01	ci right 3.463609e-01	k: 3370	n:10000
KS ci ratio: 4.292950e-02	ci left: 4.448051e-01	ci right 4.644214e-01	k: 4546	n:10000
LRRC30   10000 perm   2 sec   (6385 perm/sec)   p_kst 4.546000e-01   p_cons 3.370000e-01   p_joint 5.555000e-01

Outputting figure to mutsig2_images.part000000000099/LRRC30.3_909_10000_0.4546_0.337_0.5555.png
                gene_name: LRRC30
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 47 percent done.
LRRC37A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.159387e-01	ci left: 2.844783e-02	ci right 3.542834e-02	k: 318	n:10000
Cons ci ratio: 5.240337e-02	ci left: 3.492919e-01	ci right 3.681904e-01	k: 3587	n:10000
KS ci ratio: 6.109146e-01	ci left: 2.859150e-03	ci right 5.442922e-03	k: 40	n:10000
LRRC37A3   10000 perm   2 sec   (4103 perm/sec)   p_kst 4.000000e-03   p_cons 3.587000e-01   p_joint 3.180000e-02

Joint ci ratio: 1.732762e-01	ci left: 2.278476e-02	ci right 2.715484e-02	k: 498	n:20000
Cons ci ratio: 3.965715e-02	ci left: 3.216430e-01	ci right 3.347070e-01	k: 6563	n:20000
KS ci ratio: 4.193426e-01	ci left: 3.440841e-03	ci right 5.307780e-03	k: 86	n:20000
LRRC37A3   20000 perm   5 sec   (3799 perm/sec)   p_kst 4.300000e-03   p_cons 3.281500e-01   p_joint 2.490000e-02

Joint ci ratio: 1.051596e-01	ci left: 4.193421e-02	ci right 4.662123e-02	k: 1327	n:30000
Cons ci ratio: 3.034064e-02	ci left: 3.520408e-01	ci right 3.629201e-01	k: 10724	n:30000
KS ci ratio: 3.100462e-01	ci left: 4.479162e-03	ci right 6.152174e-03	k: 158	n:30000
LRRC37A3   30000 perm   8 sec   (3638 perm/sec)   p_kst 5.266667e-03   p_cons 3.574667e-01   p_joint 4.423333e-02

Joint ci ratio: 9.407579e-02	ci left: 3.963964e-02	ci right 4.357726e-02	k: 1663	n:40000
Cons ci ratio: 2.622578e-02	ci left: 3.536488e-01	ci right 3.630718e-01	k: 14334	n:40000
KS ci ratio: 2.666190e-01	ci left: 4.658727e-03	ci right 6.114498e-03	k: 214	n:40000
LRRC37A3   40000 perm   11 sec   (3529 perm/sec)   p_kst 5.350000e-03   p_cons 3.583500e-01   p_joint 4.157500e-02

Joint ci ratio: 8.530615e-02	ci left: 3.878884e-02	ci right 4.226476e-02	k: 2025	n:50000
Cons ci ratio: 2.338454e-02	ci left: 3.555715e-01	ci right 3.640048e-01	k: 17989	n:50000
KS ci ratio: 2.420054e-01	ci left: 4.588444e-03	ci right 5.870034e-03	k: 260	n:50000
LRRC37A3   50000 perm   15 sec   (3438 perm/sec)   p_kst 5.200000e-03   p_cons 3.597800e-01   p_joint 4.050000e-02

Joint ci ratio: 7.498205e-02	ci left: 4.193074e-02	ci right 4.521360e-02	k: 2613	n:60000
Cons ci ratio: 2.138496e-02	ci left: 3.551269e-01	ci right 3.628201e-01	k: 21538	n:60000
KS ci ratio: 2.213467e-01	ci left: 4.624464e-03	ci right 5.790851e-03	k: 311	n:60000
LRRC37A3   60000 perm   18 sec   (3390 perm/sec)   p_kst 5.183333e-03   p_cons 3.589667e-01   p_joint 4.355000e-02

Joint ci ratio: 6.779354e-02	ci left: 4.403819e-02	ci right 4.714248e-02	k: 3190	n:70000
Cons ci ratio: 1.975251e-02	ci left: 3.564857e-01	ci right 3.636117e-01	k: 25203	n:70000
KS ci ratio: 2.040838e-01	ci left: 4.707763e-03	ci right 5.791015e-03	k: 366	n:70000
LRRC37A3   70000 perm   21 sec   (3344 perm/sec)   p_kst 5.228571e-03   p_cons 3.600429e-01   p_joint 4.557143e-02

Joint ci ratio: 7.419869e-02	ci left: 3.246021e-02	ci right 3.497375e-02	k: 2696	n:80000
Cons ci ratio: 1.847807e-02	ci left: 3.566852e-01	ci right 3.633500e-01	k: 28801	n:80000
KS ci ratio: 1.923909e-01	ci left: 4.665761e-03	ci right 5.670639e-03	k: 412	n:80000
LRRC37A3   80000 perm   24 sec   (3296 perm/sec)   p_kst 5.150000e-03   p_cons 3.600125e-01   p_joint 3.370000e-02

Joint ci ratio: 7.104226e-02	ci left: 3.155851e-02	ci right 3.389396e-02	k: 2944	n:90000
Cons ci ratio: 1.743737e-02	ci left: 3.564527e-01	ci right 3.627341e-01	k: 32363	n:90000
KS ci ratio: 1.831042e-01	ci left: 4.602660e-03	ci right 5.540787e-03	k: 455	n:90000
LRRC37A3   90000 perm   28 sec   (3252 perm/sec)   p_kst 5.055556e-03   p_cons 3.595889e-01   p_joint 3.271111e-02

Joint ci ratio: 7.820306e-02	ci left: 2.355064e-02	ci right 2.547708e-02	k: 2450	n:100000
Cons ci ratio: 1.654901e-02	ci left: 3.564352e-01	ci right 3.623930e-01	k: 35941	n:100000
KS ci ratio: 1.752206e-01	ci left: 4.543552e-03	ci right 5.425536e-03	k: 497	n:100000
LRRC37A3   100000 perm   31 sec   (3205 perm/sec)   p_kst 4.970000e-03   p_cons 3.594100e-01   p_joint 2.450000e-02

Joint ci ratio: 8.066360e-02	ci left: 2.016968e-02	ci right 2.187388e-02	k: 2311	n:110000
Cons ci ratio: 1.577612e-02	ci left: 3.566544e-01	ci right 3.623348e-01	k: 39544	n:110000
KS ci ratio: 1.671891e-01	ci left: 4.556878e-03	ci right 5.396821e-03	k: 546	n:110000
LRRC37A3   110000 perm   35 sec   (3163 perm/sec)   p_kst 4.963636e-03   p_cons 3.594909e-01   p_joint 2.100909e-02

Joint ci ratio: 8.134777e-02	ci left: 1.821053e-02	ci right 1.976284e-02	k: 2277	n:120000
Cons ci ratio: 1.508264e-02	ci left: 3.574415e-01	ci right 3.628819e-01	k: 43219	n:120000
KS ci ratio: 1.608490e-01	ci left: 4.528752e-03	ci right 5.328795e-03	k: 590	n:120000
LRRC37A3   120000 perm   38 sec   (3119 perm/sec)   p_kst 4.916667e-03   p_cons 3.601583e-01   p_joint 1.897500e-02

Joint ci ratio: 8.780523e-02	ci left: 1.443654e-02	ci right 1.576983e-02	k: 1962	n:130000
Cons ci ratio: 1.450295e-02	ci left: 3.571673e-01	ci right 3.623928e-01	k: 46771	n:130000
KS ci ratio: 1.550568e-01	ci left: 4.512858e-03	ci right 5.278715e-03	k: 635	n:130000
LRRC37A3   130000 perm   42 sec   (3078 perm/sec)   p_kst 4.884615e-03   p_cons 3.597769e-01   p_joint 1.509231e-02

Joint ci ratio: 8.469265e-02	ci left: 1.443271e-02	ci right 1.571606e-02	k: 2109	n:140000
Cons ci ratio: 1.397059e-02	ci left: 3.574208e-01	ci right 3.624564e-01	k: 50391	n:140000
KS ci ratio: 1.502926e-01	ci left: 4.472174e-03	ci right 5.205709e-03	k: 676	n:140000
LRRC37A3   140000 perm   46 sec   (3026 perm/sec)   p_kst 4.828571e-03   p_cons 3.599357e-01   p_joint 1.506429e-02

Joint ci ratio: 8.924045e-02	ci left: 1.213291e-02	ci right 1.327271e-02	k: 1904	n:150000
Cons ci ratio: 1.350712e-02	ci left: 3.571576e-01	ci right 3.620212e-01	k: 53938	n:150000
KS ci ratio: 1.436482e-01	ci left: 4.585030e-03	ci right 5.300979e-03	k: 740	n:150000
LRRC37A3   150000 perm   50 sec   (2975 perm/sec)   p_kst 4.933333e-03   p_cons 3.595867e-01   p_joint 1.269333e-02

Joint ci ratio: 9.439901e-02	ci left: 1.015890e-02	ci right 1.117145e-02	k: 1705	n:160000
Cons ci ratio: 1.306649e-02	ci left: 3.576475e-01	ci right 3.623576e-01	k: 57600	n:160000
KS ci ratio: 1.397457e-01	ci left: 4.551654e-03	ci right 5.241474e-03	k: 782	n:160000
LRRC37A3   160000 perm   55 sec   (2933 perm/sec)   p_kst 4.887500e-03   p_cons 3.600000e-01   p_joint 1.065625e-02

Joint ci ratio: 9.190457e-02	ci left: 1.010136e-02	ci right 1.108014e-02	k: 1799	n:170000
Cons ci ratio: 1.268366e-02	ci left: 3.574534e-01	ci right 3.620220e-01	k: 61155	n:170000
KS ci ratio: 1.358145e-01	ci left: 4.545170e-03	ci right 5.213063e-03	k: 828	n:170000
LRRC37A3   170000 perm   59 sec   (2891 perm/sec)   p_kst 4.870588e-03   p_cons 3.597353e-01   p_joint 1.058235e-02

Joint ci ratio: 8.275802e-02	ci left: 1.180134e-02	ci right 1.282556e-02	k: 2215	n:180000
Cons ci ratio: 1.231685e-02	ci left: 3.578708e-01	ci right 3.623115e-01	k: 64816	n:180000
KS ci ratio: 1.315942e-01	ci left: 4.582633e-03	ci right 5.233470e-03	k: 882	n:180000
LRRC37A3   180000 perm   63 sec   (2853 perm/sec)   p_kst 4.900000e-03   p_cons 3.600889e-01   p_joint 1.230556e-02

Joint ci ratio: 8.362929e-02	ci left: 1.095326e-02	ci right 1.191437e-02	k: 2171	n:190000
Cons ci ratio: 1.198820e-02	ci left: 3.579358e-01	ci right 3.622579e-01	k: 68418	n:190000
KS ci ratio: 1.281573e-01	ci left: 4.585866e-03	ci right 5.218859e-03	k: 930	n:190000
LRRC37A3   190000 perm   67 sec   (2818 perm/sec)   p_kst 4.894737e-03   p_cons 3.600947e-01   p_joint 1.142632e-02

Joint ci ratio: 7.071963e-02	ci left: 1.459464e-02	ci right 1.566948e-02	k: 3025	n:200000
Cons ci ratio: 1.167983e-02	ci left: 3.581805e-01	ci right 3.623935e-01	k: 72057	n:200000
KS ci ratio: 1.242767e-01	ci left: 4.642268e-03	ci right 5.262214e-03	k: 989	n:200000
LRRC37A3   200000 perm   72 sec   (2782 perm/sec)   p_kst 4.945000e-03   p_cons 3.602850e-01   p_joint 1.512500e-02

Joint ci ratio: 7.129736e-02	ci left: 1.368427e-02	ci right 1.470064e-02	k: 2979	n:210000
Cons ci ratio: 1.139610e-02	ci left: 3.583223e-01	ci right 3.624339e-01	k: 75679	n:210000
KS ci ratio: 1.207285e-01	ci left: 4.693559e-03	ci right 5.301181e-03	k: 1048	n:210000
LRRC37A3   210000 perm   77 sec   (2743 perm/sec)   p_kst 4.990476e-03   p_cons 3.603762e-01   p_joint 1.418571e-02

Joint ci ratio: 7.029938e-02	ci left: 1.344619e-02	ci right 1.443032e-02	k: 3065	n:220000
Cons ci ratio: 1.179925e-02	ci left: 3.321108e-01	ci right 3.360572e-01	k: 73498	n:220000
KS ci ratio: 1.183296e-01	ci left: 4.669822e-03	ci right 5.261518e-03	k: 1091	n:220000
LRRC37A3   220000 perm   81 sec   (2708 perm/sec)   p_kst 4.959091e-03   p_cons 3.340818e-01   p_joint 1.393182e-02

Joint ci ratio: 6.926394e-02	ci left: 1.325882e-02	ci right 1.421437e-02	k: 3158	n:230000
Cons ci ratio: 1.154315e-02	ci left: 3.320290e-01	ci right 3.358882e-01	k: 76810	n:230000
KS ci ratio: 1.158120e-01	ci left: 4.669371e-03	ci right 5.247561e-03	k: 1139	n:230000
LRRC37A3   230000 perm   86 sec   (2676 perm/sec)   p_kst 4.952174e-03   p_cons 3.339565e-01   p_joint 1.373043e-02

Joint ci ratio: 6.667982e-02	ci left: 1.372225e-02	ci right 1.467287e-02	k: 3406	n:240000
Cons ci ratio: 1.067217e-02	ci left: 3.579336e-01	ci right 3.617781e-01	k: 86365	n:240000
KS ci ratio: 1.137377e-01	ci left: 4.644786e-03	ci right 5.208939e-03	k: 1181	n:240000
LRRC37A3   240000 perm   91 sec   (2644 perm/sec)   p_kst 4.920833e-03   p_cons 3.598542e-01   p_joint 1.419167e-02

Joint ci ratio: 6.908138e-02	ci left: 1.227651e-02	ci right 1.315884e-02	k: 3178	n:250000
Cons ci ratio: 1.045588e-02	ci left: 3.580022e-01	ci right 3.617690e-01	k: 89971	n:250000
KS ci ratio: 1.113149e-01	ci left: 4.661143e-03	ci right 5.214431e-03	k: 1233	n:250000
LRRC37A3   250000 perm   96 sec   (2609 perm/sec)   p_kst 4.932000e-03   p_cons 3.598840e-01   p_joint 1.271200e-02

Joint ci ratio: 6.217629e-02	ci left: 1.458929e-02	ci right 1.552926e-02	k: 3914	n:260000
Cons ci ratio: 1.025299e-02	ci left: 3.580317e-01	ci right 3.617253e-01	k: 93568	n:260000
KS ci ratio: 1.091259e-01	ci left: 4.668875e-03	ci right 5.211482e-03	k: 1283	n:260000
LRRC37A3   260000 perm   101 sec   (2580 perm/sec)   p_kst 4.934615e-03   p_cons 3.598769e-01   p_joint 1.505385e-02

Joint ci ratio: 5.868723e-02	ci left: 1.577826e-02	ci right 1.673587e-02	k: 4388	n:270000
Cons ci ratio: 1.006196e-02	ci left: 3.580374e-01	ci right 3.616619e-01	k: 97159	n:270000
KS ci ratio: 1.073852e-01	ci left: 4.647294e-03	ci right 5.178233e-03	k: 1325	n:270000
LRRC37A3   270000 perm   106 sec   (2544 perm/sec)   p_kst 4.907407e-03   p_cons 3.598481e-01   p_joint 1.625185e-02

Joint ci ratio: 5.690056e-02	ci left: 1.619336e-02	ci right 1.714525e-02	k: 4666	n:280000
Cons ci ratio: 9.882222e-03	ci left: 3.579970e-01	ci right 3.615559e-01	k: 100737	n:280000
KS ci ratio: 1.051093e-01	ci left: 4.682962e-03	ci right 5.205937e-03	k: 1383	n:280000
LRRC37A3   280000 perm   111 sec   (2515 perm/sec)   p_kst 4.939286e-03   p_cons 3.597750e-01   p_joint 1.666429e-02

Joint ci ratio: 5.567523e-02	ci left: 1.633875e-02	ci right 1.727784e-02	k: 4873	n:290000
Cons ci ratio: 9.713382e-03	ci left: 3.578841e-01	ci right 3.613808e-01	k: 104293	n:290000
KS ci ratio: 1.035512e-01	ci left: 4.662527e-03	ci right 5.175030e-03	k: 1425	n:290000
LRRC37A3   290000 perm   116 sec   (2489 perm/sec)   p_kst 4.913793e-03   p_cons 3.596310e-01   p_joint 1.680345e-02

Joint ci ratio: 5.494523e-02	ci left: 1.622472e-02	ci right 1.714465e-02	k: 5004	n:300000
Cons ci ratio: 9.549868e-03	ci left: 3.579258e-01	ci right 3.613636e-01	k: 107893	n:300000
KS ci ratio: 1.018167e-01	ci left: 4.666248e-03	ci right 5.170055e-03	k: 1474	n:300000
LRRC37A3   300000 perm   122 sec   (2462 perm/sec)   p_kst 4.913333e-03   p_cons 3.596433e-01   p_joint 1.668000e-02

Joint ci ratio: 5.402432e-02	ci left: 1.624863e-02	ci right 1.715399e-02	k: 5176	n:310000
Cons ci ratio: 9.401188e-03	ci left: 3.576301e-01	ci right 3.610113e-01	k: 111389	n:310000
KS ci ratio: 9.993617e-02	ci left: 4.691815e-03	ci right 5.188477e-03	k: 1530	n:310000
LRRC37A3   310000 perm   127 sec   (2434 perm/sec)   p_kst 4.935484e-03   p_cons 3.593194e-01   p_joint 1.669677e-02

Outputting figure to mutsig2_images.part000000000099/LRRC37A3.3_4953_310000_0.0049355_0.35932_0.016697.png
                gene_name: LRRC37A3
               theta_stop: 0.100 
                    nperm: 310000 
                     p_ks: 0.0049 
        ci_ks_bounds_left: 0.0047 
       ci_ks_bounds_right: 0.0052 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.017 
     ci_joint_bounds_left: 0.016 
    ci_joint_bounds_right: 0.017 

Current progress: 49 percent done.
LRRC6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.481289e-02	ci left: 4.236581e-01	ci right 4.431807e-01	k: 4334	n:10000
Cons ci ratio: 2.276448e-02	ci left: 7.391670e-01	ci right 7.562885e-01	k: 7478	n:10000
KS ci ratio: 8.679855e-02	ci left: 1.619969e-01	ci right 1.767962e-01	k: 1693	n:10000
LRRC6   10000 perm   2 sec   (6274 perm/sec)   p_kst 1.693000e-01   p_cons 7.478000e-01   p_joint 4.334000e-01

Outputting figure to mutsig2_images.part000000000099/LRRC6.3_1449_10000_0.1693_0.7478_0.4334.png
                gene_name: LRRC6
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 51 percent done.
LRRC8B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.432366e-02	ci left: 4.290429e-01	ci right 4.485928e-01	k: 4388	n:10000
KS ci ratio: 2.382713e-02	ci left: 7.213844e-01	ci right 7.388814e-01	k: 7302	n:10000
LRRC8B   10000 perm   2 sec   (5382 perm/sec)   p_kst 7.302000e-01   p_cons 4.388000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000099/LRRC8B.3_2420_10000_0.7302_0.4388_1.png
                gene_name: LRRC8B
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 53 percent done.
LRRN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.162458e-02	ci left: 5.960420e-01	ci right 6.152964e-01	k: 6057	n:10000
Cons ci ratio: 2.887637e-02	ci left: 6.387484e-01	ci right 6.575652e-01	k: 6482	n:10000
KS ci ratio: 3.443362e-02	ci left: 5.546142e-01	ci right 5.741482e-01	k: 5644	n:10000
LRRN4   10000 perm   2 sec   (5661 perm/sec)   p_kst 5.644000e-01   p_cons 6.482000e-01   p_joint 6.057000e-01

Outputting figure to mutsig2_images.part000000000099/LRRN4.3_2239_10000_0.5644_0.6482_0.6057.png
                gene_name: LRRN4
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 55 percent done.
LSAMP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.503433e-03	ci left: 9.699492e-01	ci right 9.763711e-01	k: 9733	n:10000
Cons ci ratio: 1.209756e-02	ci left: 9.074079e-01	ci right 9.185501e-01	k: 9131	n:10000
KS ci ratio: 2.438390e-02	ci left: 7.120959e-01	ci right 7.297752e-01	k: 7210	n:10000
LSAMP   10000 perm   2 sec   (6190 perm/sec)   p_kst 7.210000e-01   p_cons 9.131000e-01   p_joint 9.733000e-01

Outputting figure to mutsig2_images.part000000000099/LSAMP.3_1045_10000_0.721_0.9131_0.9733.png
                gene_name: LSAMP
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 57 percent done.
LSM14A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.584535e-03	ci left: 9.841492e-01	ci right 9.887610e-01	k: 9866	n:10000
Cons ci ratio: 2.675337e-02	ci left: 6.729719e-01	ci right 6.913219e-01	k: 6822	n:10000
KS ci ratio: 3.833363e-02	ci left: 5.012506e-01	ci right 5.209430e-01	k: 5111	n:10000
LSM14A   10000 perm   2 sec   (6065 perm/sec)   p_kst 5.111000e-01   p_cons 6.822000e-01   p_joint 9.866000e-01

Outputting figure to mutsig2_images.part000000000099/LSM14A.3_1460_10000_0.5111_0.6822_0.9866.png
                gene_name: LSM14A
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 59 percent done.
LSM4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.030657e-02	ci left: 3.681846e-01	ci right 3.872867e-01	k: 3777	n:10000
Cons ci ratio: 1.638534e-02	ci left: 8.441744e-01	ci right 8.582204e-01	k: 8513	n:10000
KS ci ratio: 6.089172e-02	ci left: 2.839917e-01	ci right 3.019291e-01	k: 2929	n:10000
LSM4   10000 perm   2 sec   (6381 perm/sec)   p_kst 2.929000e-01   p_cons 8.513000e-01   p_joint 3.777000e-01

Outputting figure to mutsig2_images.part000000000099/LSM4.3_440_10000_0.2929_0.8513_0.3777.png
                gene_name: LSM4
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 61 percent done.
LRRC17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.262006e-02	ci left: 5.810878e-01	ci right 6.004593e-01	k: 5908	n:10000
Cons ci ratio: 5.593140e-02	ci left: 3.200898e-01	ci right 3.386097e-01	k: 3293	n:10000
KS ci ratio: 8.083070e-02	ci left: 1.826474e-01	ci right 1.981334e-01	k: 1903	n:10000
LRRC17   10000 perm   2 sec   (6482 perm/sec)   p_kst 1.903000e-01   p_cons 3.293000e-01   p_joint 5.908000e-01

Outputting figure to mutsig2_images.part000000000099/LRRC17.2_1356_10000_0.1903_0.3293_0.5908.png
                gene_name: LRRC17
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 63 percent done.
LRRC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.301137e-03	ci left: 9.716422e-01	ci right 9.778770e-01	k: 9749	n:10000
Cons ci ratio: 7.523615e-02	ci left: 2.054042e-01	ci right 2.215630e-01	k: 2134	n:10000
KS ci ratio: 3.582708e-02	ci left: 5.349777e-01	ci right 5.545962e-01	k: 5448	n:10000
LRRC2   10000 perm   2 sec   (6385 perm/sec)   p_kst 5.448000e-01   p_cons 2.134000e-01   p_joint 9.749000e-01

Outputting figure to mutsig2_images.part000000000099/LRRC2.2_1148_10000_0.5448_0.2134_0.9749.png
                gene_name: LRRC2
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 65 percent done.
LRRC28
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.938267e-02	ci left: 4.877522e-01	ci right 5.074492e-01	k: 4976	n:10000
KS ci ratio: 4.965508e-03	ci left: 9.816675e-01	ci right 9.866446e-01	k: 9843	n:10000
LRRC28   10000 perm   2 sec   (6478 perm/sec)   p_kst 9.843000e-01   p_cons 4.976000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000099/LRRC28.2_1140_10000_0.9843_0.4976_1.png
                gene_name: LRRC28
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
LRRC31
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.367603e-02	ci left: 7.239092e-01	ci right 7.413551e-01	k: 7327	n:10000
Cons ci ratio: 5.772592e-02	ci left: 3.063966e-01	ci right 3.247110e-01	k: 3155	n:10000
KS ci ratio: 5.166009e-02	ci left: 3.558529e-01	ci right 3.748256e-01	k: 3653	n:10000
LRRC31   10000 perm   2 sec   (6440 perm/sec)   p_kst 3.653000e-01   p_cons 3.155000e-01   p_joint 7.327000e-01

Outputting figure to mutsig2_images.part000000000099/LRRC31.2_1695_10000_0.3653_0.3155_0.7327.png
                gene_name: LRRC31
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 69 percent done.
LRRC37B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.519941e-02	ci left: 2.567652e-01	ci right 2.741716e-01	k: 2654	n:10000
Cons ci ratio: 7.546088e-02	ci left: 2.044183e-01	ci right 2.205496e-01	k: 2124	n:10000
KS ci ratio: 4.975474e-02	ci left: 3.733580e-01	ci right 3.925103e-01	k: 3829	n:10000
LRRC37B   10000 perm   2 sec   (5466 perm/sec)   p_kst 3.829000e-01   p_cons 2.124000e-01   p_joint 2.654000e-01

Outputting figure to mutsig2_images.part000000000099/LRRC37B.2_2892_10000_0.3829_0.2124_0.2654.png
                gene_name: LRRC37B
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 71 percent done.
LRRC41
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.871812e-02	ci left: 3.833100e-01	ci right 4.025524e-01	k: 3929	n:10000
Cons ci ratio: 8.621708e-02	ci left: 1.638637e-01	ci right 1.787283e-01	k: 1712	n:10000
KS ci ratio: 1.973534e-02	ci left: 7.897918e-01	ci right 8.056344e-01	k: 7978	n:10000
LRRC41   10000 perm   2 sec   (5453 perm/sec)   p_kst 7.978000e-01   p_cons 1.712000e-01   p_joint 3.929000e-01

Outputting figure to mutsig2_images.part000000000099/LRRC41.2_2479_10000_0.7978_0.1712_0.3929.png
                gene_name: LRRC41
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 73 percent done.
LRRC42
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.622611e-02	ci left: 5.294702e-01	ci right 5.491069e-01	k: 5393	n:10000
Cons ci ratio: 4.116368e-02	ci left: 4.656703e-01	ci right 4.853440e-01	k: 4755	n:10000
KS ci ratio: 6.216491e-02	ci left: 2.755719e-01	ci right 2.933539e-01	k: 2844	n:10000
LRRC42   10000 perm   2 sec   (6454 perm/sec)   p_kst 2.844000e-01   p_cons 4.755000e-01   p_joint 5.393000e-01

Outputting figure to mutsig2_images.part000000000099/LRRC42.2_1315_10000_0.2844_0.4755_0.5393.png
                gene_name: LRRC42
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 75 percent done.
LRRC47
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.999969e-02	ci left: 6.210534e-01	ci right 6.400704e-01	k: 6306	n:10000
Cons ci ratio: 1.451967e-02	ci left: 8.728564e-01	ci right 8.857217e-01	k: 8794	n:10000
KS ci ratio: 5.649311e-02	ci left: 3.157228e-01	ci right 3.341792e-01	k: 3249	n:10000
LRRC47   10000 perm   2 sec   (5901 perm/sec)   p_kst 3.249000e-01   p_cons 8.794000e-01   p_joint 6.306000e-01

Outputting figure to mutsig2_images.part000000000099/LRRC47.2_1780_10000_0.3249_0.8794_0.6306.png
                gene_name: LRRC47
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 76 percent done.
LRRC48
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.284292e-02	ci left: 7.378529e-01	ci right 7.550034e-01	k: 7465	n:10000
KS ci ratio: 5.083495e-02	ci left: 3.633108e-01	ci right 3.823633e-01	k: 3728	n:10000
LRRC48   10000 perm   2 sec   (6054 perm/sec)   p_kst 3.728000e-01   p_cons 7.465000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000099/LRRC48.2_1672_10000_0.3728_0.7465_1.png
                gene_name: LRRC48
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
LRRC52
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.282482e-03	ci left: 9.859942e-01	ci right 9.903144e-01	k: 9883	n:10000
Cons ci ratio: 3.199653e-02	ci left: 5.904206e-01	ci right 6.097211e-01	k: 6001	n:10000
KS ci ratio: 2.213698e-02	ci left: 7.496835e-01	ci right 7.665659e-01	k: 7582	n:10000
LRRC52   10000 perm   1 sec   (6798 perm/sec)   p_kst 7.582000e-01   p_cons 6.001000e-01   p_joint 9.883000e-01

Outputting figure to mutsig2_images.part000000000099/LRRC52.2_950_10000_0.7582_0.6001_0.9883.png
                gene_name: LRRC52
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 80 percent done.
LRRC57
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.305483e-01	ci left: 7.727681e-02	ci right 8.816773e-02	k: 826	n:10000
Cons ci ratio: 1.305483e-01	ci left: 7.727681e-02	ci right 8.816773e-02	k: 826	n:10000
KS ci ratio: 5.679055e-02	ci left: 3.134405e-01	ci right 3.318629e-01	k: 3226	n:10000
LRRC57   10000 perm   1 sec   (6913 perm/sec)   p_kst 3.226000e-01   p_cons 8.260000e-02   p_joint 8.260000e-02

Joint ci ratio: 3.096222e-02	ci left: 4.379462e-01	ci right 4.517698e-01	k: 8897	n:20000
Cons ci ratio: 7.740712e-02	ci left: 1.092336e-01	ci right 1.180791e-01	k: 2272	n:20000
KS ci ratio: 4.036000e-02	ci left: 3.139842e-01	ci right 3.269681e-01	k: 6409	n:20000
LRRC57   20000 perm   3 sec   (5958 perm/sec)   p_kst 3.204500e-01   p_cons 1.136000e-01   p_joint 4.448500e-01

Outputting figure to mutsig2_images.part000000000099/LRRC57.2_740_20000_0.32045_0.1136_0.44485.png
                gene_name: LRRC57
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.45 

Current progress: 82 percent done.
LRRC58
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.206345e-01	ci left: 8.971071e-02	ci right 1.013261e-01	k: 954	n:10000
Cons ci ratio: 1.098228e-01	ci left: 1.067607e-01	ci right 1.192658e-01	k: 1129	n:10000
KS ci ratio: 1.374621e-01	ci left: 7.000876e-02	ci right 8.044030e-02	k: 751	n:10000
LRRC58   10000 perm   2 sec   (6481 perm/sec)   p_kst 7.510000e-02   p_cons 1.129000e-01   p_joint 9.540000e-02

Joint ci ratio: 8.808395e-02	ci left: 8.611760e-02	ci right 9.410203e-02	k: 1801	n:20000
Cons ci ratio: 7.638710e-02	ci left: 1.118880e-01	ci right 1.208239e-01	k: 2326	n:20000
KS ci ratio: 9.815838e-02	ci left: 7.021377e-02	ci right 7.751070e-02	k: 1476	n:20000
LRRC58   20000 perm   4 sec   (5598 perm/sec)   p_kst 7.380000e-02   p_cons 1.163000e-01   p_joint 9.005000e-02

Outputting figure to mutsig2_images.part000000000099/LRRC58.2_1132_20000_0.0738_0.1163_0.09005.png
                gene_name: LRRC58
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.074 
        ci_ks_bounds_left: 0.070 
       ci_ks_bounds_right: 0.078 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.090 
     ci_joint_bounds_left: 0.086 
    ci_joint_bounds_right: 0.094 

Current progress: 84 percent done.
LRRC8C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.312912e-02	ci left: 1.434464e-01	ci right 1.575578e-01	k: 1504	n:10000
Cons ci ratio: 3.864930e-02	ci left: 4.971503e-01	ci right 5.168456e-01	k: 5070	n:10000
KS ci ratio: 9.751786e-02	ci left: 1.322754e-01	ci right 1.459356e-01	k: 1390	n:10000
LRRC8C   10000 perm   2 sec   (5875 perm/sec)   p_kst 1.390000e-01   p_cons 5.070000e-01   p_joint 1.504000e-01

Outputting figure to mutsig2_images.part000000000099/LRRC8C.2_2420_10000_0.139_0.507_0.1504.png
                gene_name: LRRC8C
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.16 

Current progress: 86 percent done.
LRRC8D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.516050e-02	ci left: 5.442931e-01	ci right 5.638753e-01	k: 5541	n:10000
Cons ci ratio: 6.042473e-02	ci left: 2.871625e-01	ci right 3.051564e-01	k: 2961	n:10000
KS ci ratio: 1.118413e-01	ci left: 1.032490e-01	ci right 1.155795e-01	k: 1093	n:10000
LRRC8D   10000 perm   2 sec   (5823 perm/sec)   p_kst 1.093000e-01   p_cons 2.961000e-01   p_joint 5.541000e-01

Joint ci ratio: 1.719309e-02	ci left: 7.158850e-01	ci right 7.283504e-01	k: 14443	n:20000
Cons ci ratio: 3.992850e-02	ci left: 3.186588e-01	ci right 3.316921e-01	k: 6503	n:20000
KS ci ratio: 7.858209e-02	ci left: 1.062851e-01	ci right 1.150284e-01	k: 2212	n:20000
LRRC8D   20000 perm   4 sec   (5171 perm/sec)   p_kst 1.106000e-01   p_cons 3.251500e-01   p_joint 7.221500e-01

Outputting figure to mutsig2_images.part000000000099/LRRC8D.2_2581_20000_0.1106_0.32515_0.72215.png
                gene_name: LRRC8D
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 88 percent done.
LRRC8E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.882622e-02	ci left: 2.983636e-01	ci right 3.165487e-01	k: 3074	n:10000
KS ci ratio: 8.487256e-03	ci left: 9.510652e-01	ci right 9.592670e-01	k: 9553	n:10000
LRRC8E   10000 perm   2 sec   (5787 perm/sec)   p_kst 9.553000e-01   p_cons 3.074000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000099/LRRC8E.2_2399_10000_0.9553_0.3074_1.png
                gene_name: LRRC8E
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
LRRFIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.458394e-02	ci left: 7.087653e-01	ci right 7.265077e-01	k: 7177	n:10000
Cons ci ratio: 4.986017e-02	ci left: 3.723630e-01	ci right 3.915058e-01	k: 3819	n:10000
KS ci ratio: 2.797044e-02	ci left: 6.532365e-01	ci right 6.718687e-01	k: 6626	n:10000
LRRFIP1   10000 perm   2 sec   (5190 perm/sec)   p_kst 6.626000e-01   p_cons 3.819000e-01   p_joint 7.177000e-01

Outputting figure to mutsig2_images.part000000000099/LRRFIP1.2_3631_10000_0.6626_0.3819_0.7177.png
                gene_name: LRRFIP1
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 92 percent done.
LRRIQ4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.277544e-02	ci left: 5.787803e-01	ci right 5.981681e-01	k: 5885	n:10000
Cons ci ratio: 6.000711e-02	ci left: 2.900365e-01	ci right 3.080807e-01	k: 2990	n:10000
KS ci ratio: 3.008988e-02	ci left: 6.196465e-01	ci right 6.386782e-01	k: 6292	n:10000
LRRIQ4   10000 perm   2 sec   (6266 perm/sec)   p_kst 6.292000e-01   p_cons 2.990000e-01   p_joint 5.885000e-01

Outputting figure to mutsig2_images.part000000000099/LRRIQ4.2_1703_10000_0.6292_0.299_0.5885.png
                gene_name: LRRIQ4
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 94 percent done.
LRSAM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.533912e-01	ci left: 5.658036e-02	ci right 6.607718e-02	k: 612	n:10000
Cons ci ratio: 2.468251e-01	ci left: 2.155910e-02	ci right 2.772208e-02	k: 245	n:10000
KS ci ratio: 8.546586e-03	ci left: 9.504396e-01	ci right 9.586930e-01	k: 9547	n:10000
LRSAM1   10000 perm   2 sec   (5555 perm/sec)   p_kst 9.547000e-01   p_cons 2.450000e-02   p_joint 6.120000e-02

Joint ci ratio: 9.111760e-02	ci left: 8.082777e-02	ci right 8.859346e-02	k: 1693	n:20000
Cons ci ratio: 1.747179e-01	ci left: 2.240180e-02	ci right 2.673793e-02	k: 490	n:20000
KS ci ratio: 6.078902e-03	ci left: 9.511595e-01	ci right 9.570076e-01	k: 19083	n:20000
LRSAM1   20000 perm   4 sec   (4975 perm/sec)   p_kst 9.541500e-01   p_cons 2.450000e-02   p_joint 8.465000e-02

Joint ci ratio: 9.306719e-02	ci left: 5.322906e-02	ci right 5.845737e-02	k: 1674	n:30000
Cons ci ratio: 1.436101e-01	ci left: 2.249062e-02	ci right 2.600234e-02	k: 726	n:30000
KS ci ratio: 5.016279e-03	ci left: 9.507490e-01	ci right 9.555627e-01	k: 28596	n:30000
LRSAM1   30000 perm   6 sec   (4667 perm/sec)   p_kst 9.532000e-01   p_cons 2.420000e-02   p_joint 5.580000e-02

Joint ci ratio: 8.476635e-02	ci left: 4.859475e-02	ci right 5.292077e-02	k: 2029	n:40000
Cons ci ratio: 1.226523e-01	ci left: 2.337080e-02	ci right 2.644870e-02	k: 995	n:40000
KS ci ratio: 4.374240e-03	ci left: 9.504465e-01	ci right 9.546375e-01	k: 38103	n:40000
LRSAM1   40000 perm   9 sec   (4515 perm/sec)   p_kst 9.525750e-01   p_cons 2.487500e-02   p_joint 5.072500e-02

Joint ci ratio: 7.543464e-02	ci left: 4.930384e-02	ci right 5.318847e-02	k: 2561	n:50000
Cons ci ratio: 1.092994e-01	ci left: 2.370756e-02	ci right 2.646796e-02	k: 1253	n:50000
KS ci ratio: 3.891234e-03	ci left: 9.511696e-01	ci right 9.548976e-01	k: 47653	n:50000
LRSAM1   50000 perm   11 sec   (4381 perm/sec)   p_kst 9.530600e-01   p_cons 2.506000e-02   p_joint 5.122000e-02

Joint ci ratio: 6.967087e-02	ci left: 4.836792e-02	ci right 5.187576e-02	k: 3006	n:60000
Cons ci ratio: 1.005258e-01	ci left: 2.347279e-02	ci right 2.597347e-02	k: 1482	n:60000
KS ci ratio: 3.571628e-03	ci left: 9.508355e-01	ci right 9.542539e-01	k: 57154	n:60000
LRSAM1   60000 perm   14 sec   (4269 perm/sec)   p_kst 9.525667e-01   p_cons 2.470000e-02   p_joint 5.010000e-02

Joint ci ratio: 6.886308e-02	ci left: 4.271725e-02	ci right 4.577782e-02	k: 3096	n:70000
Cons ci ratio: 9.258083e-02	ci left: 2.381412e-02	ci right 2.613977e-02	k: 1747	n:70000
KS ci ratio: 3.316361e-03	ci left: 9.506951e-01	ci right 9.538672e-01	k: 66661	n:70000
LRSAM1   70000 perm   17 sec   (4169 perm/sec)   p_kst 9.523000e-01   p_cons 2.495714e-02   p_joint 4.422857e-02

Outputting figure to mutsig2_images.part000000000099/LRSAM1.2_2268_70000_0.9523_0.024957_0.044229.png
                gene_name: LRSAM1
               theta_stop: 0.093 
                    nperm: 70000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.025 
      ci_cons_bounds_left: 0.024 
     ci_cons_bounds_right: 0.026 
                  p_joint: 0.044 
     ci_joint_bounds_left: 0.043 
    ci_joint_bounds_right: 0.046 

Current progress: 96 percent done.
LRWD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.653637e-01	ci left: 4.878580e-02	ci right 5.767674e-02	k: 531	n:10000
Cons ci ratio: 2.736895e-01	ci left: 1.734654e-02	ci right 2.293792e-02	k: 200	n:10000
KS ci ratio: 2.998681e-02	ci left: 6.212544e-01	ci right 6.402693e-01	k: 6308	n:10000
LRWD1   10000 perm   2 sec   (5817 perm/sec)   p_kst 6.308000e-01   p_cons 2.000000e-02   p_joint 5.310000e-02

Joint ci ratio: 9.361530e-02	ci left: 7.681453e-02	ci right 8.440792e-02	k: 1611	n:20000
Cons ci ratio: 1.918348e-01	ci left: 1.848579e-02	ci right 2.245535e-02	k: 408	n:20000
KS ci ratio: 2.117757e-02	ci left: 6.246703e-01	ci right 6.380914e-01	k: 12628	n:20000
LRWD1   20000 perm   4 sec   (5223 perm/sec)   p_kst 6.314000e-01   p_cons 2.040000e-02   p_joint 8.055000e-02

Joint ci ratio: 8.619086e-02	ci left: 6.171330e-02	ci right 6.730473e-02	k: 1934	n:30000
Cons ci ratio: 1.568295e-01	ci left: 1.879820e-02	ci right 2.202895e-02	k: 611	n:30000
KS ci ratio: 1.733505e-02	ci left: 6.247416e-01	ci right 6.356998e-01	k: 18907	n:30000
LRWD1   30000 perm   6 sec   (4776 perm/sec)   p_kst 6.302333e-01   p_cons 2.036667e-02   p_joint 6.446667e-02

Joint ci ratio: 1.037243e-01	ci left: 3.268405e-02	ci right 3.628394e-02	k: 1378	n:40000
Cons ci ratio: 1.381708e-01	ci left: 1.836060e-02	ci right 2.110975e-02	k: 788	n:40000
KS ci ratio: 1.495184e-02	ci left: 6.273773e-01	ci right 6.368535e-01	k: 25285	n:40000
LRWD1   40000 perm   9 sec   (4618 perm/sec)   p_kst 6.321250e-01   p_cons 1.970000e-02   p_joint 3.445000e-02

Joint ci ratio: 9.352833e-02	ci left: 3.235040e-02	ci right 3.554401e-02	k: 1696	n:50000
Cons ci ratio: 1.249644e-01	ci left: 1.809269e-02	ci right 2.052358e-02	k: 964	n:50000
KS ci ratio: 1.341267e-02	ci left: 6.265124e-01	ci right 6.349924e-01	k: 31538	n:50000
LRWD1   50000 perm   11 sec   (4493 perm/sec)   p_kst 6.307600e-01   p_cons 1.928000e-02   p_joint 3.392000e-02

Joint ci ratio: 8.495712e-02	ci left: 3.280899e-02	ci right 3.573629e-02	k: 2055	n:60000
Cons ci ratio: 1.149912e-01	ci left: 1.790638e-02	ci right 2.010716e-02	k: 1139	n:60000
KS ci ratio: 1.225704e-02	ci left: 6.263895e-01	ci right 6.341312e-01	k: 37816	n:60000
LRWD1   60000 perm   14 sec   (4353 perm/sec)   p_kst 6.302667e-01   p_cons 1.898333e-02   p_joint 3.425000e-02

Joint ci ratio: 7.991719e-02	ci left: 3.189904e-02	ci right 3.456840e-02	k: 2325	n:70000
Cons ci ratio: 1.067480e-01	ci left: 1.789017e-02	ci right 1.992142e-02	k: 1322	n:70000
KS ci ratio: 1.133104e-02	ci left: 6.273699e-01	ci right 6.345335e-01	k: 44167	n:70000
LRWD1   70000 perm   17 sec   (4242 perm/sec)   p_kst 6.309571e-01   p_cons 1.888571e-02   p_joint 3.321429e-02

Joint ci ratio: 7.474537e-02	ci left: 3.199377e-02	ci right 3.449023e-02	k: 2658	n:80000
Cons ci ratio: 1.004992e-01	ci left: 1.772377e-02	ci right 1.961136e-02	k: 1492	n:80000
KS ci ratio: 1.057068e-02	ci left: 6.288601e-01	ci right 6.355553e-01	k: 50577	n:80000
LRWD1   80000 perm   19 sec   (4150 perm/sec)   p_kst 6.322125e-01   p_cons 1.865000e-02   p_joint 3.322500e-02

Joint ci ratio: 7.065870e-02	ci left: 3.189705e-02	ci right 3.424428e-02	k: 2975	n:90000
Cons ci ratio: 9.540855e-02	ci left: 1.753198e-02	ci right 1.929926e-02	k: 1656	n:90000
KS ci ratio: 9.958320e-03	ci left: 6.294183e-01	ci right 6.357287e-01	k: 56932	n:90000
LRWD1   90000 perm   22 sec   (4080 perm/sec)   p_kst 6.325778e-01   p_cons 1.840000e-02   p_joint 3.305556e-02

Outputting figure to mutsig2_images.part000000000099/LRWD1.2_2004_90000_0.63258_0.0184_0.033056.png
                gene_name: LRWD1
               theta_stop: 0.095 
                    nperm: 90000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.018 
      ci_cons_bounds_left: 0.018 
     ci_cons_bounds_right: 0.019 
                  p_joint: 0.033 
     ci_joint_bounds_left: 0.032 
    ci_joint_bounds_right: 0.034 

Current progress: 98 percent done.
LSM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.374239e-02	ci left: 8.843180e-01	ci right 8.966535e-01	k: 8906	n:10000
Cons ci ratio: 5.868840e-02	ci left: 2.993551e-01	ci right 3.175566e-01	k: 3084	n:10000
KS ci ratio: 5.617279e-02	ci left: 3.182039e-01	ci right 3.366967e-01	k: 3274	n:10000
LSM1   10000 perm   1 sec   (6747 perm/sec)   p_kst 3.274000e-01   p_cons 3.084000e-01   p_joint 8.906000e-01

Outputting figure to mutsig2_images.part000000000099/LSM1.2_418_10000_0.3274_0.3084_0.8906.png
                gene_name: LSM1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.90 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000099
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 99 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1705>
Subject: Job 8004245: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1705>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000100> was used as the working directory.
Started at Sun Nov 11 15:07:59 2012
Results reported at Sun Nov 11 19:29:50 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000100.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000100.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 100  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000100.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  15961.64 sec.
    Max Memory :      4709 MB
    Max Swap   :      7116 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
100
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 100
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 100: processing genes 8958 - 9047
Calculating significance of each gene.
Using projection method.
8958	LSS	7.061163e-01
8959	LST-3TM12	8.234912e-01
8960	LST1	3.835024e-01
8961	LTA	9.999582e-02
8962	LTA4H	5.673272e-01
8963	LTB	1
8964	LTB4R	1
8965	LTB4R2	5.912868e-01
8966	LTBP1	8.535109e-01
8967	LTBP2	4.299081e-01
8968	LTBP3	8.754391e-01
8969	LTBP4	8.846717e-01
8970	LTBR	7.956120e-01
8971	LTC4S	1
8972	LTF	1
8973	LTK	6.190512e-01
8974	LTV1	3.919083e-01
8975	LUC7L	1
8976	LUC7L2	3.429978e-01
8977	LUC7L3	1.723948e-01
8978	LUM	3.453044e-01
8979	LUZP1	8.120107e-01
8980	LUZP2	6.276910e-01
8981	LUZP4	6.208191e-01
8982	LXN	1
8983	LY6D	1
8984	LY6E	1
8985	LY6G5B	1.939988e-01
8986	LY6G5C	2.925679e-01
8987	LY6G6C	3.783411e-01
8988	LY6G6D	1
8989	LY6G6F	4.087243e-01
8990	LY6H	4.452599e-01
8991	LY6K	1
8992	LY75	8.305322e-01
8993	LY86	1
8994	LY9	2.960239e-01
8995	LY96	1
8996	LYAR	5.966509e-01
8997	LYG1	1
8998	LYG2	1
8999	LYN	4.480447e-01
9000/18094 9000	LYNX1	6.459588e-02
9001	LYPD1	3.556238e-01
9002	LYPD2	1
9003	LYPD3	1
9004	LYPD4	1
9005	LYPD5	1
9006	LYPD6	1
9007	LYPD6B	1
9008	LYPLA1	4.265727e-02
9009	LYPLA2	1
9010	LYPLAL1	1
9011	LYRM1	1
9012	LYRM2	1
9013	LYRM4	1
9014	LYRM5	1
9015	LYRM7	1
9016	LYSMD1	2.488063e-01
9017	LYSMD2	1
9018	LYSMD3	1
9019	LYSMD4	1
9020	LYST	9.985398e-01
9021	LYVE1	4.332493e-01
9022	LYZ	1
9023	LYZL1	1
9024	LYZL2	3.019540e-01
9025	LYZL4	2.779106e-01
9026	LYZL6	2.469131e-01
9027	LZIC	1
9028	LZTFL1	5.090214e-01
9029	LZTR1	3.223295e-01
9030	LZTS1	1.716023e-01
9031	LZTS2	5.687616e-01
9032	M6PR	3.980095e-01
9033	MAB21L1	1.753101e-01
9034	MAB21L2	1
9035	MACC1	1.799175e-01
9036	MACF1	1
9037	MACROD1	4.571214e-02
9038	MACROD2	1.761221e-02
9039	MAD1L1	1.934314e-01
9040	MAD2L1	1.190866e-01
9041	MAD2L1BP	1
9042	MAD2L2	1
9043	MADCAM1	4.851145e-01
9044	MADD	9.978919e-01
9045	MAEA	7.802524e-01
9046	MAEL	1
9047	MAF	4.736750e-01
Done

Running MutSig 2:
Scatter job 100: processing genes 8958 - 9047
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
MACF1
Processing conservation and coverage...
43% 87% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.125263e-02	ci left: 1.810727e-01	ci right 1.965090e-01	k: 1887	n:10000
Cons ci ratio: 6.663749e-03	ci left: 9.685759e-01	ci right 9.751453e-01	k: 9720	n:10000
KS ci ratio: 1.264263e-01	ci left: 8.212963e-02	ci right 9.331191e-02	k: 876	n:10000
MACF1   10000 perm   5 sec   (2062 perm/sec)   p_kst 8.760000e-02   p_cons 9.720000e-01   p_joint 1.887000e-01

Joint ci ratio: 6.343949e-02	ci left: 1.551906e-01	ci right 1.654083e-01	k: 3205	n:20000
Cons ci ratio: 4.669262e-03	ci left: 9.700867e-01	ci right 9.746746e-01	k: 19449	n:20000
KS ci ratio: 9.271124e-02	ci left: 7.823353e-02	ci right 8.588850e-02	k: 1640	n:20000
MACF1   20000 perm   12 sec   (1659 perm/sec)   p_kst 8.200000e-02   p_cons 9.724500e-01   p_joint 1.602500e-01

Outputting figure to mutsig2_images.part000000000100/MACF1.32_22842_20000_0.082_0.97245_0.16025.png
                gene_name: MACF1
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.082 
        ci_ks_bounds_left: 0.078 
       ci_ks_bounds_right: 0.086 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 3 percent done.
LTBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.058997e-01	ci left: 1.140829e-01	ci right 1.269391e-01	k: 1204	n:10000
Cons ci ratio: 1.833676e-01	ci left: 3.968114e-02	ci right 4.778736e-02	k: 436	n:10000
KS ci ratio: 3.958796e-02	ci left: 4.851533e-01	ci right 5.048496e-01	k: 4950	n:10000
LTBP1   10000 perm   3 sec   (3816 perm/sec)   p_kst 4.950000e-01   p_cons 4.360000e-02   p_joint 1.204000e-01

Joint ci ratio: 6.927520e-02	ci left: 1.331986e-01	ci right 1.428069e-01	k: 2759	n:20000
Cons ci ratio: 1.327092e-01	ci left: 3.901975e-02	ci right 4.461445e-02	k: 835	n:20000
KS ci ratio: 2.839265e-02	ci left: 4.809997e-01	ci right 4.949038e-01	k: 9759	n:20000
LTBP1   20000 perm   6 sec   (3531 perm/sec)   p_kst 4.879500e-01   p_cons 4.175000e-02   p_joint 1.379500e-01

Joint ci ratio: 5.749304e-02	ci left: 1.302958e-01	ci right 1.380418e-01	k: 4024	n:30000
Cons ci ratio: 1.093625e-01	ci left: 3.881651e-02	ci right 4.333958e-02	k: 1231	n:30000
KS ci ratio: 2.201628e-02	ci left: 5.080931e-01	ci right 5.194376e-01	k: 15413	n:30000
LTBP1   30000 perm   9 sec   (3427 perm/sec)   p_kst 5.137667e-01   p_cons 4.103333e-02   p_joint 1.341333e-01

Joint ci ratio: 5.415269e-02	ci left: 1.126797e-01	ci right 1.189762e-01	k: 4632	n:40000
Cons ci ratio: 9.443162e-02	ci left: 3.934643e-02	ci right 4.327052e-02	k: 1651	n:40000
KS ci ratio: 1.905322e-02	ci left: 5.092137e-01	ci right 5.190343e-01	k: 20565	n:40000
LTBP1   40000 perm   12 sec   (3354 perm/sec)   p_kst 5.141250e-01   p_cons 4.127500e-02   p_joint 1.158000e-01

Outputting figure to mutsig2_images.part000000000100/LTBP1.16_5357_40000_0.51413_0.041275_0.1158.png
                gene_name: LTBP1
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.041 
      ci_cons_bounds_left: 0.039 
     ci_cons_bounds_right: 0.043 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 5 percent done.
LYST
Processing conservation and coverage...
86% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.064893e-02	ci left: 7.745865e-01	ci right 7.908485e-01	k: 7828	n:10000
Cons ci ratio: 7.021289e-03	ci left: 9.654135e-01	ci right 9.723098e-01	k: 9690	n:10000
KS ci ratio: 2.479635e-02	ci left: 7.052335e-01	ci right 7.230416e-01	k: 7142	n:10000
LYST   10000 perm   3 sec   (3089 perm/sec)   p_kst 7.142000e-01   p_cons 9.690000e-01   p_joint 7.828000e-01

Outputting figure to mutsig2_images.part000000000100/LYST.15_11610_10000_0.7142_0.969_0.7828.png
                gene_name: LYST
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 8 percent done.
LTBP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.213559e-02	ci left: 9.068938e-01	ci right 9.180646e-01	k: 9126	n:10000
Cons ci ratio: 3.496884e-02	ci left: 5.469983e-01	ci right 5.665686e-01	k: 5568	n:10000
KS ci ratio: 1.703364e-02	ci left: 8.338874e-01	ci right 8.483133e-01	k: 8412	n:10000
LTBP2   10000 perm   2 sec   (4596 perm/sec)   p_kst 8.412000e-01   p_cons 5.568000e-01   p_joint 9.126000e-01

Outputting figure to mutsig2_images.part000000000100/LTBP2.9_5610_10000_0.8412_0.5568_0.9126.png
                gene_name: LTBP2
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 11 percent done.
LST-3TM12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.006498e-01	ci left: 1.250322e-01	ci right 1.383831e-01	k: 1316	n:10000
Cons ci ratio: 6.145499e-03	ci left: 9.729141e-01	ci right 9.790043e-01	k: 9761	n:10000
KS ci ratio: 1.912852e-01	ci left: 3.643453e-02	ci right 4.423614e-02	k: 402	n:10000
LST-3TM12   10000 perm   2 sec   (5248 perm/sec)   p_kst 4.020000e-02   p_cons 9.761000e-01   p_joint 1.316000e-01

Joint ci ratio: 8.755103e-02	ci left: 8.709768e-02	ci right 9.512166e-02	k: 1821	n:20000
Cons ci ratio: 3.923802e-03	ci left: 9.783825e-01	ci right 9.822761e-01	k: 19608	n:20000
KS ci ratio: 1.356132e-01	ci left: 3.737462e-02	ci right 4.286011e-02	k: 801	n:20000
LST-3TM12   20000 perm   4 sec   (4729 perm/sec)   p_kst 4.005000e-02   p_cons 9.804000e-01   p_joint 9.105000e-02

Joint ci ratio: 6.864804e-02	ci left: 9.465800e-02	ci right 1.014201e-01	k: 2940	n:30000
Cons ci ratio: 3.252081e-03	ci left: 9.781441e-01	ci right 9.813620e-01	k: 29394	n:30000
KS ci ratio: 1.113082e-01	ci left: 3.748611e-02	ci right 4.193693e-02	k: 1190	n:30000
LST-3TM12   30000 perm   7 sec   (4545 perm/sec)   p_kst 3.966667e-02   p_cons 9.798000e-01   p_joint 9.800000e-02

Joint ci ratio: 6.074186e-02	ci left: 9.142841e-02	ci right 9.718064e-02	k: 3771	n:40000
Cons ci ratio: 2.769315e-03	ci left: 9.790453e-01	ci right 9.817843e-01	k: 39218	n:40000
KS ci ratio: 9.639606e-02	ci left: 3.778311e-02	ci right 4.163408e-02	k: 1587	n:40000
LST-3TM12   40000 perm   9 sec   (4420 perm/sec)   p_kst 3.967500e-02   p_cons 9.804500e-01   p_joint 9.427500e-02

Outputting figure to mutsig2_images.part000000000100/LST-3TM12.7_1973_40000_0.039675_0.98045_0.094275.png
                gene_name: LST-3TM12
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.040 
        ci_ks_bounds_left: 0.038 
       ci_ks_bounds_right: 0.042 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.094 
     ci_joint_bounds_left: 0.091 
    ci_joint_bounds_right: 0.097 

Current progress: 14 percent done.
LTBP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 6.751719e-02	ci left: 2.435138e-01	ci right 2.606309e-01	k: 2520	n:10000
KS ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
LTBP4   10000 perm   2 sec   (4803 perm/sec)   p_kst 1.000000e-04   p_cons 2.520000e-01   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 4.784375e-02	ci left: 2.452504e-01	ci right 2.573220e-01	k: 5025	n:20000
KS ci ratio: 2.771651e+00	ci left: 1.265890e-06	ci right 2.785503e-04	k: 1	n:20000
LTBP4   20000 perm   5 sec   (4329 perm/sec)   p_kst 5.000000e-05   p_cons 2.512500e-01   p_joint 0

Joint ci ratio: 3.919869e+00	ci left: 0	ci right 1.229551e-04	k: 0	n:30000
Cons ci ratio: 3.918585e-02	ci left: 2.452072e-01	ci right 2.550413e-01	k: 7503	n:30000
KS ci ratio: 2.771720e+00	ci left: 8.439266e-07	ci right 1.857073e-04	k: 1	n:30000
LTBP4   30000 perm   7 sec   (4149 perm/sec)   p_kst 3.333333e-05   p_cons 2.501000e-01   p_joint 0

Joint ci ratio: 3.919902e+00	ci left: 0	ci right 9.221773e-05	k: 0	n:40000
Cons ci ratio: 3.292922e-02	ci left: 2.572730e-01	ci right 2.659117e-01	k: 10463	n:40000
KS ci ratio: 2.771755e+00	ci left: 6.329450e-07	ci right 1.392831e-04	k: 1	n:40000
LTBP4   40000 perm   10 sec   (4033 perm/sec)   p_kst 2.500000e-05   p_cons 2.615750e-01   p_joint 0

Joint ci ratio: 4.325322e-01	ci left: 1.286716e-03	ci right 2.013116e-03	k: 81	n:50000
Cons ci ratio: 2.943605e-02	ci left: 2.579506e-01	ci right 2.656771e-01	k: 13090	n:50000
KS ci ratio: 2.263123e+00	ci left: 4.844222e-06	ci right 1.444862e-04	k: 2	n:50000
LTBP4   50000 perm   13 sec   (3939 perm/sec)   p_kst 4.000000e-05   p_cons 2.618000e-01   p_joint 1.620000e-03

Joint ci ratio: 3.956530e-01	ci left: 1.311197e-03	ci right 1.971846e-03	k: 97	n:60000
Cons ci ratio: 2.685072e-02	ci left: 2.585844e-01	ci right 2.656387e-01	k: 15726	n:60000
KS ci ratio: 2.263138e+00	ci left: 4.036847e-06	ci right 1.204062e-04	k: 2	n:60000
LTBP4   60000 perm   16 sec   (3864 perm/sec)   p_kst 3.333333e-05   p_cons 2.621000e-01   p_joint 1.616667e-03

Joint ci ratio: 4.152520e-01	ci left: 1.008384e-03	ci right 1.548609e-03	k: 88	n:70000
Cons ci ratio: 2.428119e-02	ci left: 2.680086e-01	ci right 2.746104e-01	k: 18991	n:70000
KS ci ratio: 1.959930e+00	ci left: 8.838260e-06	ci right 1.252416e-04	k: 3	n:70000
LTBP4   70000 perm   18 sec   (3800 perm/sec)   p_kst 4.285714e-05   p_cons 2.713000e-01   p_joint 1.257143e-03

Joint ci ratio: 3.752097e-01	ci left: 1.107559e-03	ci right 1.629681e-03	k: 108	n:80000
Cons ci ratio: 2.277788e-02	ci left: 2.671001e-01	ci right 2.732666e-01	k: 21614	n:80000
KS ci ratio: 1.959939e+00	ci left: 7.733468e-06	ci right 1.095870e-04	k: 3	n:80000
LTBP4   80000 perm   21 sec   (3745 perm/sec)   p_kst 3.750000e-05   p_cons 2.701750e-01   p_joint 1.350000e-03

Joint ci ratio: 3.621665e-01	ci left: 1.065147e-03	ci right 1.545701e-03	k: 116	n:90000
Cons ci ratio: 2.147694e-02	ci left: 2.672454e-01	ci right 2.730583e-01	k: 24313	n:90000
KS ci ratio: 1.959946e+00	ci left: 6.874187e-06	ci right 9.741102e-05	k: 3	n:90000
LTBP4   90000 perm   24 sec   (3689 perm/sec)   p_kst 3.333333e-05   p_cons 2.701444e-01   p_joint 1.288889e-03

Joint ci ratio: 3.116104e-01	ci left: 1.334172e-03	ci right 1.835450e-03	k: 157	n:100000
Cons ci ratio: 2.032922e-02	ci left: 2.682767e-01	ci right 2.737966e-01	k: 27103	n:100000
KS ci ratio: 1.481561e+00	ci left: 2.201925e-05	ci right 1.305901e-04	k: 6	n:100000
LTBP4   100000 perm   28 sec   (3634 perm/sec)   p_kst 6.000000e-05   p_cons 2.710300e-01   p_joint 1.570000e-03

Joint ci ratio: 3.077560e-01	ci left: 1.246413e-03	ci right 1.707787e-03	k: 161	n:110000
Cons ci ratio: 2.091054e-02	ci left: 2.395890e-01	ci right 2.446609e-01	k: 26633	n:110000
KS ci ratio: 1.385873e+00	ci left: 2.558549e-05	ci right 1.311108e-04	k: 7	n:110000
LTBP4   110000 perm   31 sec   (3585 perm/sec)   p_kst 6.363636e-05   p_cons 2.421182e-01   p_joint 1.463636e-03

Joint ci ratio: 3.004360e-01	ci left: 1.204122e-03	ci right 1.637216e-03	k: 169	n:120000
Cons ci ratio: 2.003136e-02	ci left: 2.394958e-01	ci right 2.443500e-01	k: 29030	n:120000
KS ci ratio: 1.385877e+00	ci left: 2.345334e-05	ci right 1.201852e-04	k: 7	n:120000
LTBP4   120000 perm   34 sec   (3536 perm/sec)   p_kst 5.833333e-05   p_cons 2.419167e-01   p_joint 1.408333e-03

Joint ci ratio: 3.276253e-01	ci left: 9.201174e-04	ci right 1.287336e-03	k: 142	n:130000
Cons ci ratio: 1.920775e-02	ci left: 2.403101e-01	ci right 2.449783e-01	k: 31543	n:130000
KS ci ratio: 1.385881e+00	ci left: 2.164921e-05	ci right 1.109405e-04	k: 7	n:130000
LTBP4   130000 perm   37 sec   (3485 perm/sec)   p_kst 5.384615e-05   p_cons 2.426385e-01   p_joint 1.092308e-03

Joint ci ratio: 3.231452e-01	ci left: 8.806295e-04	ci right 1.226286e-03	k: 146	n:140000
Cons ci ratio: 1.850634e-02	ci left: 2.404489e-01	ci right 2.449474e-01	k: 33977	n:140000
KS ci ratio: 1.385885e+00	ci left: 2.010282e-05	ci right 1.030164e-04	k: 7	n:140000
LTBP4   140000 perm   41 sec   (3436 perm/sec)   p_kst 5.000000e-05   p_cons 2.426929e-01   p_joint 1.042857e-03

Joint ci ratio: 3.359837e-01	ci left: 7.546437e-04	ci right 1.065171e-03	k: 135	n:150000
Cons ci ratio: 1.785131e-02	ci left: 2.410904e-01	ci right 2.454395e-01	k: 36489	n:150000
KS ci ratio: 1.385888e+00	ci left: 1.876262e-05	ci right 9.614879e-05	k: 7	n:150000
LTBP4   150000 perm   44 sec   (3387 perm/sec)   p_kst 4.666667e-05   p_cons 2.432600e-01   p_joint 9.000000e-04

Joint ci ratio: 3.384935e-01	ci left: 6.960332e-04	ci right 9.850494e-04	k: 133	n:160000
Cons ci ratio: 1.729669e-02	ci left: 2.409000e-01	ci right 2.451093e-01	k: 38880	n:160000
KS ci ratio: 1.385890e+00	ci left: 1.758994e-05	ci right 9.013963e-05	k: 7	n:160000
LTBP4   160000 perm   48 sec   (3338 perm/sec)   p_kst 4.375000e-05   p_cons 2.430000e-01   p_joint 8.312500e-04

Joint ci ratio: 3.323531e-01	ci left: 6.820241e-04	ci right 9.589866e-04	k: 138	n:170000
Cons ci ratio: 1.677276e-02	ci left: 2.411269e-01	ci right 2.452113e-01	k: 41338	n:170000
KS ci ratio: 1.306628e+00	ci left: 2.031687e-05	ci right 9.272253e-05	k: 8	n:170000
LTBP4   170000 perm   52 sec   (3295 perm/sec)   p_kst 4.705882e-05   p_cons 2.431647e-01   p_joint 8.117647e-04

Joint ci ratio: 3.410661e-01	ci left: 6.085281e-04	ci right 8.635522e-04	k: 131	n:180000
Cons ci ratio: 1.632082e-02	ci left: 2.407209e-01	ci right 2.446874e-01	k: 43686	n:180000
KS ci ratio: 1.306630e+00	ci left: 1.918815e-05	ci right 8.757138e-05	k: 8	n:180000
LTBP4   180000 perm   56 sec   (3216 perm/sec)   p_kst 4.444444e-05   p_cons 2.427000e-01   p_joint 7.277778e-04

Joint ci ratio: 3.276826e-01	ci left: 6.295376e-04	ci right 8.808363e-04	k: 142	n:190000
Cons ci ratio: 1.589851e-02	ci left: 2.404744e-01	ci right 2.443334e-01	k: 46056	n:190000
KS ci ratio: 1.306632e+00	ci left: 1.817823e-05	ci right 8.296246e-05	k: 8	n:190000
LTBP4   190000 perm   60 sec   (3180 perm/sec)   p_kst 4.210526e-05   p_cons 2.424000e-01   p_joint 7.473684e-04

Joint ci ratio: 3.221020e-01	ci left: 6.210216e-04	ci right 8.638272e-04	k: 147	n:200000
Cons ci ratio: 1.547153e-02	ci left: 2.411016e-01	ci right 2.448658e-01	k: 48596	n:200000
KS ci ratio: 1.306634e+00	ci left: 1.726931e-05	ci right 7.881442e-05	k: 8	n:200000
LTBP4   200000 perm   64 sec   (3131 perm/sec)   p_kst 4.000000e-05   p_cons 2.429800e-01   p_joint 7.350000e-04

Joint ci ratio: 3.607630e-01	ci left: 4.607934e-04	ci right 6.676842e-04	k: 117	n:210000
Cons ci ratio: 1.436162e-02	ci left: 2.599825e-01	ci right 2.637479e-01	k: 54991	n:210000
KS ci ratio: 1.239580e+00	ci left: 1.959720e-05	ci right 8.135464e-05	k: 9	n:210000
LTBP4   210000 perm   68 sec   (3100 perm/sec)   p_kst 4.285714e-05   p_cons 2.618619e-01   p_joint 5.571429e-04

Joint ci ratio: 3.385325e-01	ci left: 5.061970e-04	ci right 7.164146e-04	k: 133	n:220000
Cons ci ratio: 1.403582e-02	ci left: 2.599049e-01	ci right 2.635832e-01	k: 57583	n:220000
KS ci ratio: 1.181892e+00	ci left: 2.179743e-05	ci right 8.359093e-05	k: 10	n:220000
LTBP4   220000 perm   72 sec   (3068 perm/sec)   p_kst 4.545455e-05   p_cons 2.617409e-01   p_joint 6.045455e-04

Joint ci ratio: 3.348077e-01	ci left: 4.961289e-04	ci right 6.994090e-04	k: 136	n:230000
Cons ci ratio: 1.372429e-02	ci left: 2.600302e-01	ci right 2.636279e-01	k: 60220	n:230000
KS ci ratio: 1.181894e+00	ci left: 2.084971e-05	ci right 7.995661e-05	k: 10	n:230000
LTBP4   230000 perm   76 sec   (3027 perm/sec)   p_kst 4.347826e-05   p_cons 2.618261e-01   p_joint 5.913043e-04

Joint ci ratio: 3.323931e-01	ci left: 4.830917e-04	ci right 6.792968e-04	k: 138	n:240000
Cons ci ratio: 1.343696e-02	ci left: 2.600212e-01	ci right 2.635429e-01	k: 62827	n:240000
KS ci ratio: 1.181895e+00	ci left: 1.998096e-05	ci right 7.662514e-05	k: 10	n:240000
LTBP4   240000 perm   80 sec   (2997 perm/sec)   p_kst 4.166667e-05   p_cons 2.617792e-01   p_joint 5.750000e-04

Joint ci ratio: 3.372881e-01	ci left: 4.491116e-04	ci right 6.347870e-04	k: 134	n:250000
Cons ci ratio: 1.349263e-02	ci left: 2.507021e-01	ci right 2.541116e-01	k: 63101	n:250000
KS ci ratio: 1.181896e+00	ci left: 1.918172e-05	ci right 7.356019e-05	k: 10	n:250000
LTBP4   250000 perm   84 sec   (2967 perm/sec)   p_kst 4.000000e-05   p_cons 2.524040e-01   p_joint 5.360000e-04

Joint ci ratio: 3.312106e-01	ci left: 4.494552e-04	ci right 6.312109e-04	k: 139	n:260000
Cons ci ratio: 1.323426e-02	ci left: 2.506314e-01	ci right 2.539742e-01	k: 65598	n:260000
KS ci ratio: 1.087183e+00	ci left: 2.384859e-05	ci right 8.062009e-05	k: 12	n:260000
LTBP4   260000 perm   89 sec   (2930 perm/sec)   p_kst 4.615385e-05   p_cons 2.523000e-01   p_joint 5.346154e-04

Joint ci ratio: 3.372949e-01	ci left: 4.158428e-04	ci right 5.877679e-04	k: 134	n:270000
Cons ci ratio: 1.297923e-02	ci left: 2.508843e-01	ci right 2.541655e-01	k: 68181	n:270000
KS ci ratio: 1.012110e+00	ci left: 2.834817e-05	ci right 8.699707e-05	k: 14	n:270000
LTBP4   270000 perm   93 sec   (2899 perm/sec)   p_kst 5.185185e-05   p_cons 2.525222e-01   p_joint 4.962963e-04

Joint ci ratio: 3.336097e-01	ci left: 4.108030e-04	ci right 5.783900e-04	k: 137	n:280000
Cons ci ratio: 1.275274e-02	ci left: 2.506956e-01	ci right 2.539167e-01	k: 70645	n:280000
KS ci ratio: 1.012111e+00	ci left: 2.733573e-05	ci right 8.389008e-05	k: 14	n:280000
LTBP4   280000 perm   98 sec   (2870 perm/sec)   p_kst 5.000000e-05   p_cons 2.523036e-01   p_joint 4.892857e-04

Joint ci ratio: 3.336126e-01	ci left: 3.966369e-04	ci right 5.584463e-04	k: 137	n:290000
Cons ci ratio: 1.253255e-02	ci left: 2.506752e-01	ci right 2.538401e-01	k: 73154	n:290000
KS ci ratio: 9.799713e-01	ci left: 2.894989e-05	ci right 8.530967e-05	k: 15	n:290000
LTBP4   290000 perm   102 sec   (2834 perm/sec)   p_kst 5.172414e-05   p_cons 2.522552e-01   p_joint 4.724138e-04

Joint ci ratio: 3.312226e-01	ci left: 3.895257e-04	ci right 5.470530e-04	k: 139	n:300000
Cons ci ratio: 1.232382e-02	ci left: 2.506434e-01	ci right 2.537547e-01	k: 75659	n:300000
KS ci ratio: 9.507111e-01	ci left: 3.048491e-05	ci right 8.660855e-05	k: 16	n:300000
LTBP4   300000 perm   107 sec   (2807 perm/sec)   p_kst 5.333333e-05   p_cons 2.521967e-01   p_joint 4.633333e-04

Joint ci ratio: 3.437341e-01	ci left: 3.474334e-04	ci right 4.944277e-04	k: 129	n:310000
Cons ci ratio: 1.212819e-02	ci left: 2.505207e-01	ci right 2.535807e-01	k: 78135	n:310000
KS ci ratio: 9.507120e-01	ci left: 2.950151e-05	ci right 8.381477e-05	k: 16	n:310000
LTBP4   310000 perm   111 sec   (2781 perm/sec)   p_kst 5.161290e-05   p_cons 2.520484e-01   p_joint 4.161290e-04

Joint ci ratio: 3.607981e-01	ci left: 3.023909e-04	ci right 4.381761e-04	k: 117	n:320000
Cons ci ratio: 1.193892e-02	ci left: 2.504902e-01	ci right 2.535018e-01	k: 80638	n:320000
KS ci ratio: 9.507129e-01	ci left: 2.857958e-05	ci right 8.119560e-05	k: 16	n:320000
LTBP4   320000 perm   116 sec   (2755 perm/sec)   p_kst 5.000000e-05   p_cons 2.519938e-01   p_joint 3.656250e-04

Joint ci ratio: 3.577798e-01	ci left: 2.987410e-04	ci right 4.315036e-04	k: 119	n:330000
Cons ci ratio: 1.175777e-02	ci left: 2.504770e-01	ci right 2.534425e-01	k: 83146	n:330000
KS ci ratio: 8.992824e-01	ci left: 3.232740e-05	ci right 8.620397e-05	k: 18	n:330000
LTBP4   330000 perm   121 sec   (2727 perm/sec)   p_kst 5.454545e-05   p_cons 2.519576e-01   p_joint 3.606061e-04

Joint ci ratio: 3.533900e-01	ci left: 2.979899e-04	ci right 4.284209e-04	k: 122	n:340000
Cons ci ratio: 1.158706e-02	ci left: 2.503857e-01	ci right 2.533068e-01	k: 85627	n:340000
KS ci ratio: 8.992832e-01	ci left: 3.137659e-05	ci right 8.366860e-05	k: 18	n:340000
LTBP4   340000 perm   126 sec   (2701 perm/sec)   p_kst 5.294118e-05   p_cons 2.518441e-01   p_joint 3.588235e-04

Joint ci ratio: 3.477801e-01	ci left: 2.998982e-04	ci right 4.286112e-04	k: 126	n:350000
Cons ci ratio: 1.142305e-02	ci left: 2.503170e-01	ci right 2.531957e-01	k: 88114	n:350000
KS ci ratio: 8.992840e-01	ci left: 3.048011e-05	ci right 8.127810e-05	k: 18	n:350000
LTBP4   350000 perm   131 sec   (2676 perm/sec)   p_kst 5.142857e-05   p_cons 2.517543e-01   p_joint 3.600000e-04

Joint ci ratio: 3.548395e-01	ci left: 2.789037e-04	ci right 4.015967e-04	k: 121	n:360000
Cons ci ratio: 1.126225e-02	ci left: 2.503717e-01	ci right 2.532101e-01	k: 90644	n:360000
KS ci ratio: 8.992847e-01	ci left: 2.963343e-05	ci right 7.902041e-05	k: 18	n:360000
LTBP4   360000 perm   136 sec   (2650 perm/sec)   p_kst 5.000000e-05   p_cons 2.517889e-01   p_joint 3.361111e-04

Joint ci ratio: 3.548411e-01	ci left: 2.713655e-04	ci right 3.907431e-04	k: 121	n:370000
Cons ci ratio: 1.111754e-02	ci left: 2.501026e-01	ci right 2.529013e-01	k: 93055	n:370000
KS ci ratio: 8.992854e-01	ci left: 2.883252e-05	ci right 7.688475e-05	k: 18	n:370000
LTBP4   370000 perm   141 sec   (2625 perm/sec)   p_kst 4.864865e-05   p_cons 2.515000e-01   p_joint 3.270270e-04

Joint ci ratio: 3.519685e-01	ci left: 2.690202e-04	ci right 3.861890e-04	k: 123	n:380000
Cons ci ratio: 1.097220e-02	ci left: 2.500554e-01	ci right 2.528168e-01	k: 95545	n:380000
KS ci ratio: 1.012118e+00	ci left: 2.014206e-05	ci right 6.181402e-05	k: 14	n:380000
LTBP4   380000 perm   146 sec   (2603 perm/sec)   p_kst 3.684211e-05   p_cons 2.514342e-01   p_joint 3.236842e-04

Joint ci ratio: 3.533983e-01	ci left: 2.597851e-04	ci right 3.734968e-04	k: 122	n:390000
Cons ci ratio: 1.083198e-02	ci left: 2.500263e-01	ci right 2.527518e-01	k: 98041	n:390000
KS ci ratio: 1.012119e+00	ci left: 1.962560e-05	ci right 6.022906e-05	k: 14	n:390000
LTBP4   390000 perm   151 sec   (2580 perm/sec)   p_kst 3.589744e-05   p_cons 2.513872e-01   p_joint 3.128205e-04

Joint ci ratio: 3.464264e-01	ci left: 2.646921e-04	ci right 3.777534e-04	k: 127	n:400000
Cons ci ratio: 1.069820e-02	ci left: 2.499563e-01	ci right 2.526473e-01	k: 100520	n:400000
KS ci ratio: 9.799792e-01	ci left: 2.098861e-05	ci right 6.184979e-05	k: 15	n:400000
LTBP4   400000 perm   156 sec   (2559 perm/sec)   p_kst 3.750000e-05   p_cons 2.513000e-01   p_joint 3.175000e-04

Joint ci ratio: 3.491673e-01	ci left: 2.537840e-04	ci right 3.632378e-04	k: 125	n:410000
Cons ci ratio: 1.056337e-02	ci left: 2.500994e-01	ci right 2.527577e-01	k: 103085	n:410000
KS ci ratio: 9.799797e-01	ci left: 2.047669e-05	ci right 6.034128e-05	k: 15	n:410000
LTBP4   410000 perm   162 sec   (2538 perm/sec)   p_kst 3.658537e-05   p_cons 2.514268e-01   p_joint 3.048780e-04

Joint ci ratio: 3.505629e-01	ci left: 2.455696e-04	ci right 3.520003e-04	k: 124	n:420000
Cons ci ratio: 1.043193e-02	ci left: 2.502929e-01	ci right 2.529200e-01	k: 105674	n:420000
KS ci ratio: 9.799802e-01	ci left: 1.998915e-05	ci right 5.890460e-05	k: 15	n:420000
LTBP4   420000 perm   167 sec   (2518 perm/sec)   p_kst 3.571429e-05   p_cons 2.516048e-01   p_joint 2.952381e-04

Joint ci ratio: 3.491698e-01	ci left: 2.419798e-04	ci right 3.463435e-04	k: 125	n:430000
Cons ci ratio: 1.030985e-02	ci left: 2.503105e-01	ci right 2.529068e-01	k: 108191	n:430000
KS ci ratio: 9.799806e-01	ci left: 1.952428e-05	ci right 5.753474e-05	k: 15	n:430000
LTBP4   430000 perm   172 sec   (2498 perm/sec)   p_kst 3.488372e-05   p_cons 2.516070e-01   p_joint 2.906977e-04

Joint ci ratio: 3.670937e-01	ci left: 2.116591e-04	ci right 3.087583e-04	k: 113	n:440000
Cons ci ratio: 1.019252e-02	ci left: 2.503070e-01	ci right 2.528736e-01	k: 110699	n:440000
KS ci ratio: 9.239329e-01	ci left: 2.250726e-05	ci right 6.185984e-05	k: 17	n:440000
LTBP4   440000 perm   178 sec   (2477 perm/sec)   p_kst 3.863636e-05   p_cons 2.515886e-01   p_joint 2.568182e-04

Joint ci ratio: 3.654948e-01	ci left: 2.089732e-04	ci right 3.043230e-04	k: 114	n:450000
Cons ci ratio: 1.007845e-02	ci left: 2.503282e-01	ci right 2.528661e-01	k: 113218	n:450000
KS ci ratio: 9.239334e-01	ci left: 2.200710e-05	ci right 6.048520e-05	k: 17	n:450000
LTBP4   450000 perm   183 sec   (2455 perm/sec)   p_kst 3.777778e-05   p_cons 2.515956e-01   p_joint 2.533333e-04

Joint ci ratio: 3.639166e-01	ci left: 2.064049e-04	ci right 3.000796e-04	k: 115	n:460000
Cons ci ratio: 9.970084e-03	ci left: 2.502749e-01	ci right 2.527848e-01	k: 115703	n:460000
KS ci ratio: 9.239338e-01	ci left: 2.152868e-05	ci right 5.917031e-05	k: 17	n:460000
LTBP4   460000 perm   189 sec   (2434 perm/sec)   p_kst 3.695652e-05   p_cons 2.515283e-01   p_joint 2.500000e-04

Joint ci ratio: 3.592999e-01	ci left: 2.078164e-04	ci right 3.006554e-04	k: 118	n:470000
Cons ci ratio: 9.860178e-03	ci left: 2.504130e-01	ci right 2.528964e-01	k: 118277	n:470000
KS ci ratio: 9.239342e-01	ci left: 2.107062e-05	ci right 5.791138e-05	k: 17	n:470000
LTBP4   470000 perm   195 sec   (2413 perm/sec)   p_kst 3.617021e-05   p_cons 2.516532e-01   p_joint 2.510638e-04

Joint ci ratio: 3.563183e-01	ci left: 2.072791e-04	ci right 2.989314e-04	k: 120	n:480000
Cons ci ratio: 9.758361e-03	ci left: 2.503708e-01	ci right 2.528280e-01	k: 120767	n:480000
KS ci ratio: 9.239346e-01	ci left: 2.063164e-05	ci right 5.670491e-05	k: 17	n:480000
LTBP4   480000 perm   201 sec   (2388 perm/sec)   p_kst 3.541667e-05   p_cons 2.515979e-01   p_joint 2.500000e-04

Joint ci ratio: 3.519815e-01	ci left: 2.086267e-04	ci right 2.994956e-04	k: 123	n:490000
Cons ci ratio: 9.657278e-03	ci left: 2.504221e-01	ci right 2.528543e-01	k: 123302	n:490000
KS ci ratio: 8.992913e-01	ci left: 2.177145e-05	ci right 5.805603e-05	k: 18	n:490000
LTBP4   490000 perm   207 sec   (2367 perm/sec)   p_kst 3.673469e-05   p_cons 2.516367e-01   p_joint 2.510204e-04

Joint ci ratio: 3.491770e-01	ci left: 2.081020e-04	ci right 2.978566e-04	k: 125	n:500000
Cons ci ratio: 9.560542e-03	ci left: 2.504216e-01	ci right 2.528293e-01	k: 125812	n:500000
KS ci ratio: 8.765202e-01	ci left: 2.287863e-05	ci right 5.934107e-05	k: 19	n:500000
LTBP4   500000 perm   213 sec   (2347 perm/sec)   p_kst 3.800000e-05   p_cons 2.516240e-01   p_joint 2.500000e-04

Joint ci ratio: 3.519832e-01	ci left: 2.004451e-04	ci right 2.877510e-04	k: 123	n:510000
Cons ci ratio: 9.467099e-03	ci left: 2.504036e-01	ci right 2.527874e-01	k: 128313	n:510000
KS ci ratio: 8.553957e-01	ci left: 2.395412e-05	ci right 6.056480e-05	k: 20	n:510000
LTBP4   510000 perm   219 sec   (2328 perm/sec)   p_kst 3.921569e-05   p_cons 2.515941e-01   p_joint 2.411765e-04

Joint ci ratio: 3.491787e-01	ci left: 2.000979e-04	ci right 2.864008e-04	k: 125	n:520000
Cons ci ratio: 9.374812e-03	ci left: 2.504479e-01	ci right 2.528087e-01	k: 130846	n:520000
KS ci ratio: 8.553960e-01	ci left: 2.349346e-05	ci right 5.940010e-05	k: 20	n:520000
LTBP4   520000 perm   225 sec   (2309 perm/sec)   p_kst 3.846154e-05   p_cons 2.516269e-01   p_joint 2.403846e-04

Joint ci ratio: 3.450944e-01	ci left: 2.014894e-04	ci right 2.871490e-04	k: 128	n:530000
Cons ci ratio: 9.284753e-03	ci left: 2.505075e-01	ci right 2.528461e-01	k: 133388	n:530000
KS ci ratio: 8.357287e-01	ci left: 2.452720e-05	ci right 6.056678e-05	k: 21	n:530000
LTBP4   530000 perm   231 sec   (2291 perm/sec)   p_kst 3.962264e-05   p_cons 2.516755e-01   p_joint 2.415094e-04

Joint ci ratio: 3.563234e-01	ci left: 1.842476e-04	ci right 2.657175e-04	k: 120	n:540000
Cons ci ratio: 9.199050e-03	ci left: 2.504911e-01	ci right 2.528079e-01	k: 135890	n:540000
KS ci ratio: 8.173583e-01	ci left: 2.553218e-05	ci right 6.168133e-05	k: 22	n:540000
LTBP4   540000 perm   238 sec   (2272 perm/sec)   p_kst 4.074074e-05   p_cons 2.516481e-01   p_joint 2.222222e-04

Joint ci ratio: 3.519864e-01	ci left: 1.858670e-04	ci right 2.668241e-04	k: 123	n:550000
Cons ci ratio: 9.115060e-03	ci left: 2.505008e-01	ci right 2.527964e-01	k: 138406	n:550000
KS ci ratio: 8.001485e-01	ci left: 2.650932e-05	ci right 6.274715e-05	k: 23	n:550000
LTBP4   550000 perm   244 sec   (2254 perm/sec)   p_kst 4.181818e-05   p_cons 2.516473e-01   p_joint 2.236364e-04

Joint ci ratio: 3.464424e-01	ci left: 1.890644e-04	ci right 2.698262e-04	k: 127	n:560000
Cons ci ratio: 9.034530e-03	ci left: 2.504603e-01	ci right 2.527351e-01	k: 140894	n:560000
KS ci ratio: 7.687567e-01	ci left: 2.889071e-05	ci right 6.590096e-05	k: 25	n:560000
LTBP4   560000 perm   251 sec   (2235 perm/sec)   p_kst 4.464286e-05   p_cons 2.515964e-01   p_joint 2.267857e-04

Joint ci ratio: 3.478047e-01	ci left: 1.841460e-04	ci right 2.631858e-04	k: 126	n:570000
Cons ci ratio: 8.953510e-03	ci left: 2.505299e-01	ci right 2.527849e-01	k: 143444	n:570000
KS ci ratio: 7.279066e-01	ci left: 3.264199e-05	ci right 7.099536e-05	k: 28	n:570000
LTBP4   570000 perm   257 sec   (2217 perm/sec)   p_kst 4.912281e-05   p_cons 2.516561e-01   p_joint 2.210526e-04

Joint ci ratio: 3.411531e-01	ci left: 1.888461e-04	ci right 2.680115e-04	k: 131	n:580000
Cons ci ratio: 8.879386e-03	ci left: 2.503958e-01	ci right 2.526308e-01	k: 145877	n:580000
KS ci ratio: 7.040334e-01	ci left: 3.489832e-05	ci right 7.383861e-05	k: 30	n:580000
LTBP4   580000 perm   264 sec   (2200 perm/sec)   p_kst 5.172414e-05   p_cons 2.515121e-01   p_joint 2.258621e-04

Joint ci ratio: 3.437686e-01	ci left: 1.825469e-04	ci right 2.597889e-04	k: 129	n:590000
Cons ci ratio: 8.802830e-03	ci left: 2.504474e-01	ci right 2.526635e-01	k: 148417	n:590000
KS ci ratio: 6.929453e-01	ci left: 3.570026e-05	ci right 7.457888e-05	k: 31	n:590000
LTBP4   590000 perm   270 sec   (2182 perm/sec)   p_kst 5.254237e-05   p_cons 2.515542e-01   p_joint 2.186441e-04

Joint ci ratio: 3.519897e-01	ci left: 1.703779e-04	ci right 2.445892e-04	k: 123	n:600000
Cons ci ratio: 8.729844e-03	ci left: 2.504275e-01	ci right 2.526249e-01	k: 150915	n:600000
KS ci ratio: 6.929456e-01	ci left: 3.510525e-05	ci right 7.333591e-05	k: 31	n:600000
LTBP4   600000 perm   277 sec   (2165 perm/sec)   p_kst 5.166667e-05   p_cons 2.515250e-01   p_joint 2.050000e-04

Joint ci ratio: 3.754340e-01	ci left: 1.452391e-04	ci right 2.137546e-04	k: 108	n:610000
Cons ci ratio: 8.443839e-03	ci left: 2.599702e-01	ci right 2.621763e-01	k: 159254	n:610000
KS ci ratio: 6.929459e-01	ci left: 3.452975e-05	ci right 7.213370e-05	k: 31	n:610000
LTBP4   610000 perm   284 sec   (2148 perm/sec)   p_kst 5.081967e-05   p_cons 2.610721e-01   p_joint 1.770492e-04

Joint ci ratio: 3.720363e-01	ci left: 1.458193e-04	ci right 2.138344e-04	k: 110	n:620000
Cons ci ratio: 8.375038e-03	ci left: 2.599989e-01	ci right 2.621872e-01	k: 161877	n:620000
KS ci ratio: 6.823657e-01	ci left: 3.530345e-05	ci right 7.286125e-05	k: 32	n:620000
LTBP4   620000 perm   291 sec   (2131 perm/sec)   p_kst 5.161290e-05   p_cons 2.610919e-01   p_joint 1.774194e-04

Joint ci ratio: 3.862172e-01	ci left: 1.320159e-04	ci right 1.965379e-04	k: 102	n:630000
Cons ci ratio: 8.308062e-03	ci left: 2.600189e-01	ci right 2.621897e-01	k: 164495	n:630000
KS ci ratio: 6.823660e-01	ci left: 3.474307e-05	ci right 7.170473e-05	k: 32	n:630000
LTBP4   630000 perm   298 sec   (2115 perm/sec)   p_kst 5.079365e-05   p_cons 2.611032e-01   p_joint 1.619048e-04

Joint ci ratio: 3.862177e-01	ci left: 1.299531e-04	ci right 1.934671e-04	k: 102	n:640000
Cons ci ratio: 8.240199e-03	ci left: 2.601537e-01	ci right 2.623078e-01	k: 167187	n:640000
KS ci ratio: 6.823663e-01	ci left: 3.420021e-05	ci right 7.058435e-05	k: 32	n:640000
LTBP4   640000 perm   306 sec   (2093 perm/sec)   p_kst 5.000000e-05   p_cons 2.612297e-01   p_joint 1.593750e-04

Joint ci ratio: 3.825216e-01	ci left: 1.307334e-04	ci right 1.938635e-04	k: 104	n:650000
Cons ci ratio: 8.178728e-03	ci left: 2.600602e-01	ci right 2.621974e-01	k: 169733	n:650000
KS ci ratio: 6.823666e-01	ci left: 3.367405e-05	ci right 6.949845e-05	k: 32	n:650000
LTBP4   650000 perm   313 sec   (2078 perm/sec)   p_kst 4.923077e-05   p_cons 2.611277e-01   p_joint 1.600000e-04

Joint ci ratio: 3.789297e-01	ci left: 1.314929e-04	ci right 1.942451e-04	k: 106	n:660000
Cons ci ratio: 8.113228e-03	ci left: 2.602252e-01	ci right 2.623466e-01	k: 172448	n:660000
KS ci ratio: 6.823668e-01	ci left: 3.316383e-05	ci right 6.844546e-05	k: 32	n:660000
LTBP4   660000 perm   320 sec   (2062 perm/sec)   p_kst 4.848485e-05   p_cons 2.612848e-01   p_joint 1.606061e-04

Joint ci ratio: 3.737264e-01	ci left: 1.335844e-04	ci right 1.962451e-04	k: 109	n:670000
Cons ci ratio: 8.050987e-03	ci left: 2.603034e-01	ci right 2.624091e-01	k: 175108	n:670000
KS ci ratio: 6.722569e-01	ci left: 3.390424e-05	ci right 6.916986e-05	k: 33	n:670000
LTBP4   670000 perm   327 sec   (2047 perm/sec)   p_kst 4.925373e-05   p_cons 2.613552e-01   p_joint 1.626866e-04

Joint ci ratio: 3.720393e-01	ci left: 1.329527e-04	ci right 1.949670e-04	k: 110	n:680000
Cons ci ratio: 7.990856e-03	ci left: 2.603456e-01	ci right 2.624358e-01	k: 177745	n:680000
KS ci ratio: 6.722572e-01	ci left: 3.340564e-05	ci right 6.815267e-05	k: 33	n:680000
LTBP4   680000 perm   335 sec   (2032 perm/sec)   p_kst 4.852941e-05   p_cons 2.613897e-01   p_joint 1.617647e-04

Joint ci ratio: 3.687321e-01	ci left: 1.336547e-04	ci right 1.953085e-04	k: 112	n:690000
Cons ci ratio: 7.935090e-03	ci left: 2.602390e-01	ci right 2.623137e-01	k: 180280	n:690000
KS ci ratio: 6.625837e-01	ci left: 3.412485e-05	ci right 6.885671e-05	k: 34	n:690000
LTBP4   690000 perm   342 sec   (2017 perm/sec)   p_kst 4.927536e-05   p_cons 2.612754e-01   p_joint 1.623188e-04

Joint ci ratio: 3.900262e-01	ci left: 1.162357e-04	ci right 1.737499e-04	k: 100	n:700000
Cons ci ratio: 7.878988e-03	ci left: 2.602083e-01	ci right 2.622680e-01	k: 182866	n:700000
KS ci ratio: 6.625839e-01	ci left: 3.363735e-05	ci right 6.787305e-05	k: 34	n:700000
LTBP4   700000 perm   349 sec   (2003 perm/sec)   p_kst 4.857143e-05   p_cons 2.612371e-01   p_joint 1.428571e-04

Joint ci ratio: 3.881097e-01	ci left: 1.158693e-04	ci right 1.728483e-04	k: 101	n:710000
Cons ci ratio: 7.823345e-03	ci left: 2.602136e-01	ci right 2.622587e-01	k: 185477	n:710000
KS ci ratio: 6.533163e-01	ci left: 3.433655e-05	ci right 6.855783e-05	k: 35	n:710000
LTBP4   710000 perm   357 sec   (1989 perm/sec)   p_kst 4.929577e-05   p_cons 2.612352e-01   p_joint 1.422535e-04

Joint ci ratio: 3.563334e-01	ci left: 1.381851e-04	ci right 1.992892e-04	k: 120	n:720000
Cons ci ratio: 7.965378e-03	ci left: 2.507048e-01	ci right 2.527111e-01	k: 181229	n:720000
KS ci ratio: 6.533165e-01	ci left: 3.385965e-05	ci right 6.760565e-05	k: 35	n:720000
LTBP4   720000 perm   365 sec   (1974 perm/sec)   p_kst 4.861111e-05   p_cons 2.517069e-01   p_joint 1.666667e-04

Joint ci ratio: 3.563339e-01	ci left: 1.362921e-04	ci right 1.965593e-04	k: 120	n:730000
Cons ci ratio: 7.911814e-03	ci left: 2.506555e-01	ci right 2.526478e-01	k: 183705	n:730000
KS ci ratio: 6.533168e-01	ci left: 3.339581e-05	ci right 6.667955e-05	k: 35	n:730000
LTBP4   730000 perm   372 sec   (1960 perm/sec)   p_kst 4.794521e-05   p_cons 2.516507e-01   p_joint 1.643836e-04

Joint ci ratio: 3.593167e-01	ci left: 1.319905e-04	ci right 1.909585e-04	k: 118	n:740000
Cons ci ratio: 7.858781e-03	ci left: 2.506332e-01	ci right 2.526120e-01	k: 186200	n:740000
KS ci ratio: 6.533170e-01	ci left: 3.294451e-05	ci right 6.577848e-05	k: 35	n:740000
LTBP4   740000 perm   380 sec   (1946 perm/sec)   p_kst 4.729730e-05   p_cons 2.516216e-01   p_joint 1.594595e-04

Joint ci ratio: 3.807169e-01	ci left: 1.145075e-04	ci right 1.694760e-04	k: 105	n:750000
Cons ci ratio: 7.805474e-03	ci left: 2.506755e-01	ci right 2.526411e-01	k: 188743	n:750000
KS ci ratio: 6.358914e-01	ci left: 3.473545e-05	ci right 6.799887e-05	k: 37	n:750000
LTBP4   750000 perm   388 sec   (1932 perm/sec)   p_kst 4.933333e-05   p_cons 2.516573e-01   p_joint 1.400000e-04

Joint ci ratio: 3.789338e-01	ci left: 1.141910e-04	ci right 1.686869e-04	k: 106	n:760000
Cons ci ratio: 7.754970e-03	ci left: 2.506326e-01	ci right 2.525851e-01	k: 191222	n:760000
KS ci ratio: 6.276858e-01	ci left: 3.538321e-05	ci right 6.862827e-05	k: 38	n:760000
LTBP4   760000 perm   397 sec   (1916 perm/sec)   p_kst 5.000000e-05   p_cons 2.516079e-01   p_joint 1.394737e-04

Joint ci ratio: 3.754411e-01	ci left: 1.150592e-04	ci right 1.693387e-04	k: 108	n:770000
Cons ci ratio: 7.702724e-03	ci left: 2.507232e-01	ci right 2.526631e-01	k: 193803	n:770000
KS ci ratio: 6.197899e-01	ci left: 3.601688e-05	ci right 6.923869e-05	k: 39	n:770000
LTBP4   770000 perm   405 sec   (1903 perm/sec)   p_kst 5.064935e-05   p_cons 2.516922e-01   p_joint 1.402597e-04

Joint ci ratio: 3.720432e-01	ci left: 1.159073e-04	ci right 1.699716e-04	k: 110	n:780000
Cons ci ratio: 7.653448e-03	ci left: 2.507167e-01	ci right 2.526441e-01	k: 196310	n:780000
KS ci ratio: 6.121847e-01	ci left: 3.663689e-05	ci right 6.983095e-05	k: 40	n:780000
LTBP4   780000 perm   413 sec   (1890 perm/sec)   p_kst 5.128205e-05   p_cons 2.516795e-01   p_joint 1.410256e-04

Joint ci ratio: 3.754418e-01	ci left: 1.121462e-04	ci right 1.650517e-04	k: 108	n:790000
Cons ci ratio: 7.604619e-03	ci left: 2.507344e-01	ci right 2.526497e-01	k: 198836	n:790000
KS ci ratio: 6.121849e-01	ci left: 3.617313e-05	ci right 6.894702e-05	k: 40	n:790000
LTBP4   790000 perm   421 sec   (1877 perm/sec)   p_kst 5.063291e-05   p_cons 2.516911e-01   p_joint 1.367089e-04

Joint ci ratio: 3.737314e-01	ci left: 1.118767e-04	ci right 1.643557e-04	k: 109	n:800000
Cons ci ratio: 7.555585e-03	ci left: 2.508079e-01	ci right 2.527114e-01	k: 201407	n:800000
KS ci ratio: 6.121851e-01	ci left: 3.572097e-05	ci right 6.808519e-05	k: 40	n:800000
LTBP4   800000 perm   429 sec   (1864 perm/sec)   p_kst 5.000000e-05   p_cons 2.517587e-01   p_joint 1.362500e-04

Joint ci ratio: 3.687366e-01	ci left: 1.138537e-04	ci right 1.663743e-04	k: 112	n:810000
Cons ci ratio: 7.510390e-03	ci left: 2.507342e-01	ci right 2.526256e-01	k: 203860	n:810000
KS ci ratio: 6.048531e-01	ci left: 3.632407e-05	ci right 6.866744e-05	k: 41	n:810000
LTBP4   810000 perm   437 sec   (1851 perm/sec)   p_kst 5.061728e-05   p_cons 2.516790e-01   p_joint 1.382716e-04

Joint ci ratio: 3.671159e-01	ci left: 1.135720e-04	ci right 1.656772e-04	k: 113	n:820000
Cons ci ratio: 7.464692e-03	ci left: 2.507280e-01	ci right 2.526079e-01	k: 206367	n:820000
KS ci ratio: 5.977784e-01	ci left: 3.691476e-05	ci right 6.923328e-05	k: 42	n:820000
LTBP4   820000 perm   446 sec   (1837 perm/sec)   p_kst 5.121951e-05   p_cons 2.516671e-01   p_joint 1.378049e-04

Joint ci ratio: 4.021603e-01	ci left: 9.152090e-05	ci right 1.385912e-04	k: 94	n:830000
Cons ci ratio: 7.418393e-03	ci left: 2.507943e-01	ci right 2.526629e-01	k: 208934	n:830000
KS ci ratio: 5.977786e-01	ci left: 3.647000e-05	ci right 6.839915e-05	k: 42	n:830000
LTBP4   830000 perm   455 sec   (1823 perm/sec)   p_kst 5.060241e-05   p_cons 2.517277e-01   p_joint 1.132530e-04

Joint ci ratio: 3.979925e-01	ci left: 9.257275e-05	ci right 1.395607e-04	k: 96	n:840000
Cons ci ratio: 7.374740e-03	ci left: 2.507674e-01	ci right 2.526248e-01	k: 211424	n:840000
KS ci ratio: 5.977787e-01	ci left: 3.603583e-05	ci right 6.758488e-05	k: 42	n:840000
LTBP4   840000 perm   464 sec   (1811 perm/sec)   p_kst 5.000000e-05   p_cons 2.516952e-01   p_joint 1.142857e-04

Joint ci ratio: 4.064626e-01	ci left: 8.725379e-05	ci right 1.327394e-04	k: 92	n:850000
Cons ci ratio: 7.329674e-03	ci left: 2.508529e-01	ci right 2.526994e-01	k: 214009	n:850000
KS ci ratio: 5.977789e-01	ci left: 3.561188e-05	ci right 6.678977e-05	k: 42	n:850000
LTBP4   850000 perm   472 sec   (1799 perm/sec)   p_kst 4.941176e-05   p_cons 2.517753e-01   p_joint 1.082353e-04

Joint ci ratio: 4.064628e-01	ci left: 8.623920e-05	ci right 1.311959e-04	k: 92	n:860000
Cons ci ratio: 7.287469e-03	ci left: 2.508306e-01	ci right 2.526664e-01	k: 216503	n:860000
KS ci ratio: 5.977791e-01	ci left: 3.519778e-05	ci right 6.601315e-05	k: 42	n:860000
LTBP4   860000 perm   481 sec   (1788 perm/sec)   p_kst 4.883721e-05   p_cons 2.517477e-01   p_joint 1.069767e-04

Joint ci ratio: 2.342270e-01	ci left: 2.841652e-04	ci right 3.606056e-04	k: 279	n:870000
Cons ci ratio: 7.247688e-03	ci left: 2.507206e-01	ci right 2.525454e-01	k: 218920	n:870000
KS ci ratio: 5.909470e-01	ci left: 3.576955e-05	ci right 6.657497e-05	k: 43	n:870000
LTBP4   870000 perm   490 sec   (1776 perm/sec)   p_kst 4.942529e-05   p_cons 2.516322e-01   p_joint 3.206897e-04

Joint ci ratio: 2.325715e-01	ci left: 2.852157e-04	ci right 3.613185e-04	k: 283	n:880000
Cons ci ratio: 7.205311e-03	ci left: 2.507822e-01	ci right 2.525968e-01	k: 221486	n:880000
KS ci ratio: 5.843438e-01	ci left: 3.633030e-05	ci right 6.712209e-05	k: 44	n:880000
LTBP4   880000 perm   499 sec   (1765 perm/sec)   p_kst 5.000000e-05   p_cons 2.516886e-01   p_joint 3.215909e-04

Joint ci ratio: 2.321634e-01	ci left: 2.830692e-04	ci right 3.584477e-04	k: 284	n:890000
Cons ci ratio: 7.162343e-03	ci left: 2.509120e-01	ci right 2.527166e-01	k: 224114	n:890000
KS ci ratio: 5.779572e-01	ci left: 3.688035e-05	ci right 6.765509e-05	k: 45	n:890000
LTBP4   890000 perm   508 sec   (1753 perm/sec)   p_kst 5.056180e-05   p_cons 2.518135e-01   p_joint 3.191011e-04

Joint ci ratio: 2.305511e-01	ci left: 2.841109e-04	ci right 3.591665e-04	k: 288	n:900000
Cons ci ratio: 7.120744e-03	ci left: 2.510067e-01	ci right 2.528015e-01	k: 226713	n:900000
KS ci ratio: 5.779574e-01	ci left: 3.647057e-05	ci right 6.690337e-05	k: 45	n:900000
LTBP4   900000 perm   517 sec   (1742 perm/sec)   p_kst 5.000000e-05   p_cons 2.519033e-01   p_joint 3.200000e-04

Joint ci ratio: 2.281941e-01	ci left: 2.872034e-04	ci right 3.621912e-04	k: 294	n:910000
Cons ci ratio: 7.081883e-03	ci left: 2.509919e-01	ci right 2.527767e-01	k: 229214	n:910000
KS ci ratio: 5.717757e-01	ci left: 3.700878e-05	ci right 6.742531e-05	k: 46	n:910000
LTBP4   910000 perm   526 sec   (1731 perm/sec)   p_kst 5.054945e-05   p_cons 2.518835e-01   p_joint 3.230769e-04

Joint ci ratio: 2.274246e-01	ci left: 2.861315e-04	ci right 3.605521e-04	k: 296	n:920000
Cons ci ratio: 7.042494e-03	ci left: 2.510392e-01	ci right 2.528145e-01	k: 231772	n:920000
KS ci ratio: 5.717759e-01	ci left: 3.660651e-05	ci right 6.669244e-05	k: 46	n:920000
LTBP4   920000 perm   535 sec   (1720 perm/sec)   p_kst 5.000000e-05   p_cons 2.519261e-01   p_joint 3.217391e-04

Joint ci ratio: 1.496110e-01	ci left: 6.824444e-04	ci right 7.938214e-04	k: 685	n:930000
Cons ci ratio: 7.004535e-03	ci left: 2.510437e-01	ci right 2.528094e-01	k: 234291	n:930000
KS ci ratio: 5.543565e-01	ci left: 3.897925e-05	ci right 6.965597e-05	k: 49	n:930000
LTBP4   930000 perm   544 sec   (1709 perm/sec)   p_kst 5.268817e-05   p_cons 2.519258e-01   p_joint 7.365591e-04

Joint ci ratio: 1.488535e-01	ci left: 6.823531e-04	ci right 7.931012e-04	k: 692	n:940000
Cons ci ratio: 6.967851e-03	ci left: 2.510120e-01	ci right 2.527682e-01	k: 236776	n:940000
KS ci ratio: 5.543567e-01	ci left: 3.856457e-05	ci right 6.891495e-05	k: 49	n:940000
LTBP4   940000 perm   554 sec   (1698 perm/sec)   p_kst 5.212766e-05   p_cons 2.518894e-01   p_joint 7.361702e-04

Joint ci ratio: 1.485327e-01	ci left: 6.782107e-04	ci right 7.880282e-04	k: 695	n:950000
Cons ci ratio: 6.932183e-03	ci left: 2.509569e-01	ci right 2.527036e-01	k: 239238	n:950000
KS ci ratio: 5.543568e-01	ci left: 3.815863e-05	ci right 6.818954e-05	k: 49	n:950000
LTBP4   950000 perm   563 sec   (1687 perm/sec)   p_kst 5.157895e-05   p_cons 2.518295e-01   p_joint 7.315789e-04

Joint ci ratio: 1.477914e-01	ci left: 6.781674e-04	ci right 7.873814e-04	k: 702	n:960000
Cons ci ratio: 6.896847e-03	ci left: 2.509143e-01	ci right 2.526518e-01	k: 241711	n:960000
KS ci ratio: 5.488949e-01	ci left: 3.865749e-05	ci right 6.866481e-05	k: 50	n:960000
LTBP4   960000 perm   572 sec   (1677 perm/sec)   p_kst 5.208333e-05   p_cons 2.517823e-01   p_joint 7.312500e-04

Joint ci ratio: 1.473730e-01	ci left: 6.751473e-04	ci right 7.835400e-04	k: 706	n:970000
Cons ci ratio: 6.861482e-03	ci left: 2.509035e-01	ci right 2.526320e-01	k: 244214	n:970000
KS ci ratio: 5.488951e-01	ci left: 3.825896e-05	ci right 6.795693e-05	k: 50	n:970000
LTBP4   970000 perm   582 sec   (1667 perm/sec)   p_kst 5.154639e-05   p_cons 2.517670e-01   p_joint 7.278351e-04

Joint ci ratio: 1.465461e-01	ci left: 6.761212e-04	ci right 7.840079e-04	k: 714	n:980000
Cons ci ratio: 6.826194e-03	ci left: 2.509184e-01	ci right 2.526381e-01	k: 246742	n:980000
KS ci ratio: 5.488952e-01	ci left: 3.786856e-05	ci right 6.726350e-05	k: 50	n:980000
LTBP4   980000 perm   591 sec   (1657 perm/sec)   p_kst 5.102041e-05   p_cons 2.517776e-01   p_joint 7.285714e-04

Joint ci ratio: 1.456323e-01	ci left: 6.780504e-04	ci right 7.855115e-04	k: 723	n:990000
Cons ci ratio: 6.791664e-03	ci left: 2.509210e-01	ci right 2.526320e-01	k: 249258	n:990000
KS ci ratio: 5.488954e-01	ci left: 3.748605e-05	ci right 6.658408e-05	k: 50	n:990000
LTBP4   990000 perm   601 sec   (1647 perm/sec)   p_kst 5.050505e-05   p_cons 2.517758e-01   p_joint 7.303030e-04

Joint ci ratio: 1.460371e-01	ci left: 6.674155e-04	ci right 7.735109e-04	k: 719	n:1000000
Cons ci ratio: 6.757239e-03	ci left: 2.509465e-01	ci right 2.526489e-01	k: 251797	n:1000000
KS ci ratio: 5.435918e-01	ci left: 3.797308e-05	ci right 6.705504e-05	k: 51	n:1000000
LTBP4   1000000 perm   611 sec   (1637 perm/sec)   p_kst 5.100000e-05   p_cons 2.517970e-01   p_joint 7.190000e-04

Joint ci ratio: 1.451327e-01	ci left: 6.693938e-04	ci right 7.750876e-04	k: 728	n:1010000
Cons ci ratio: 6.725029e-03	ci left: 2.508766e-01	ci right 2.525704e-01	k: 254240	n:1010000
KS ci ratio: 5.334299e-01	ci left: 3.930780e-05	ci right 6.863836e-05	k: 53	n:1010000
LTBP4   1010000 perm   621 sec   (1627 perm/sec)   p_kst 5.247525e-05   p_cons 2.517228e-01   p_joint 7.207921e-04

Joint ci ratio: 1.446377e-01	ci left: 6.675554e-04	ci right 7.725683e-04	k: 733	n:1020000
Cons ci ratio: 6.691777e-03	ci left: 2.508923e-01	ci right 2.525778e-01	k: 256769	n:1020000
KS ci ratio: 5.334301e-01	ci left: 3.892243e-05	ci right 6.796544e-05	k: 53	n:1020000
LTBP4   1020000 perm   631 sec   (1618 perm/sec)   p_kst 5.196078e-05   p_cons 2.517343e-01   p_joint 7.186275e-04

Joint ci ratio: 1.439529e-01	ci left: 6.676250e-04	ci right 7.721089e-04	k: 740	n:1030000
Cons ci ratio: 6.661228e-03	ci left: 2.507826e-01	ci right 2.524596e-01	k: 259169	n:1030000
KS ci ratio: 5.238175e-01	ci left: 4.022697e-05	ci right 6.950435e-05	k: 55	n:1030000
LTBP4   1030000 perm   641 sec   (1608 perm/sec)   p_kst 5.339806e-05   p_cons 2.516204e-01   p_joint 7.184466e-04

Joint ci ratio: 1.434698e-01	ci left: 6.658403e-04	ci right 7.696653e-04	k: 745	n:1040000
Cons ci ratio: 6.629874e-03	ci left: 2.507441e-01	ci right 2.524130e-01	k: 261641	n:1040000
KS ci ratio: 5.238177e-01	ci left: 3.984017e-05	ci right 6.883605e-05	k: 55	n:1040000
LTBP4   1040000 perm   650 sec   (1599 perm/sec)   p_kst 5.288462e-05   p_cons 2.515779e-01   p_joint 7.163462e-04

Joint ci ratio: 1.524223e-01	ci left: 5.815385e-04	ci right 6.783935e-04	k: 660	n:1050000
Cons ci ratio: 6.598625e-03	ci left: 2.507255e-01	ci right 2.523863e-01	k: 264133	n:1050000
KS ci ratio: 5.238178e-01	ci left: 3.946074e-05	ci right 6.818047e-05	k: 55	n:1050000
LTBP4   1050000 perm   660 sec   (1590 perm/sec)   p_kst 5.238095e-05   p_cons 2.515552e-01   p_joint 6.285714e-04

Joint ci ratio: 1.525382e-01	ci left: 5.751447e-04	ci right 6.710143e-04	k: 659	n:1060000
Cons ci ratio: 6.566991e-03	ci left: 2.507543e-01	ci right 2.524074e-01	k: 266675	n:1060000
KS ci ratio: 5.192025e-01	ci left: 3.990760e-05	ci right 6.860385e-05	k: 56	n:1060000
LTBP4   1060000 perm   671 sec   (1580 perm/sec)   p_kst 5.283019e-05   p_cons 2.515802e-01   p_joint 6.216981e-04

Joint ci ratio: 1.540644e-01	ci left: 5.580857e-04	ci right 6.521284e-04	k: 646	n:1070000
Cons ci ratio: 6.535596e-03	ci left: 2.507948e-01	ci right 2.524402e-01	k: 269230	n:1070000
KS ci ratio: 5.147070e-01	ci left: 4.034720e-05	ci right 6.901825e-05	k: 57	n:1070000
LTBP4   1070000 perm   681 sec   (1571 perm/sec)   p_kst 5.327103e-05   p_cons 2.516168e-01   p_joint 6.037383e-04

Joint ci ratio: 1.535905e-01	ci left: 5.564793e-04	ci right 6.499364e-04	k: 650	n:1080000
Cons ci ratio: 6.504903e-03	ci left: 2.508197e-01	ci right 2.524575e-01	k: 271769	n:1080000
KS ci ratio: 5.147072e-01	ci left: 3.997361e-05	ci right 6.837920e-05	k: 57	n:1080000
LTBP4   1080000 perm   692 sec   (1562 perm/sec)   p_kst 5.277778e-05   p_cons 2.516380e-01   p_joint 6.018519e-04

Joint ci ratio: 1.560075e-01	ci left: 5.337356e-04	ci right 6.249155e-04	k: 630	n:1090000
Cons ci ratio: 6.475996e-03	ci left: 2.507654e-01	ci right 2.523955e-01	k: 274222	n:1090000
KS ci ratio: 5.147073e-01	ci left: 3.960688e-05	ci right 6.775187e-05	k: 57	n:1090000
LTBP4   1090000 perm   702 sec   (1553 perm/sec)   p_kst 5.229358e-05   p_cons 2.515798e-01   p_joint 5.779817e-04

Joint ci ratio: 1.552710e-01	ci left: 5.341256e-04	ci right 6.249013e-04	k: 636	n:1100000
Cons ci ratio: 6.446396e-03	ci left: 2.507748e-01	ci right 2.523975e-01	k: 276744	n:1100000
KS ci ratio: 5.060558e-01	ci left: 4.083073e-05	ci right 6.918646e-05	k: 59	n:1100000
LTBP4   1100000 perm   712 sec   (1544 perm/sec)   p_kst 5.363636e-05   p_cons 2.515855e-01   p_joint 5.781818e-04

Joint ci ratio: 1.540661e-01	ci left: 5.379741e-04	ci right 6.286289e-04	k: 646	n:1110000
Cons ci ratio: 6.416937e-03	ci left: 2.507992e-01	ci right 2.524147e-01	k: 279283	n:1110000
KS ci ratio: 5.060559e-01	ci left: 4.046288e-05	ci right 6.856317e-05	k: 59	n:1110000
LTBP4   1110000 perm   723 sec   (1536 perm/sec)   p_kst 5.315315e-05   p_cons 2.516063e-01   p_joint 5.819820e-04

Joint ci ratio: 1.538288e-01	ci left: 5.348876e-04	ci right 6.248706e-04	k: 648	n:1120000
Cons ci ratio: 6.387878e-03	ci left: 2.508233e-01	ci right 2.524315e-01	k: 281822	n:1120000
KS ci ratio: 5.060560e-01	ci left: 4.010160e-05	ci right 6.795100e-05	k: 59	n:1120000
LTBP4   1120000 perm   733 sec   (1527 perm/sec)   p_kst 5.267857e-05   p_cons 2.516268e-01   p_joint 5.785714e-04

Joint ci ratio: 1.528892e-01	ci left: 5.369621e-04	ci right 6.266919e-04	k: 656	n:1130000
Cons ci ratio: 6.359674e-03	ci left: 2.508196e-01	ci right 2.524206e-01	k: 284330	n:1130000
KS ci ratio: 4.899859e-01	ci left: 4.284179e-05	ci right 7.133074e-05	k: 63	n:1130000
LTBP4   1130000 perm   744 sec   (1519 perm/sec)   p_kst 5.575221e-05   p_cons 2.516195e-01   p_joint 5.805310e-04

Joint ci ratio: 1.520811e-01	ci left: 5.381580e-04	ci right 6.275690e-04	k: 663	n:1140000
Cons ci ratio: 6.331959e-03	ci left: 2.508089e-01	ci right 2.524029e-01	k: 286830	n:1140000
KS ci ratio: 4.899860e-01	ci left: 4.246598e-05	ci right 7.070504e-05	k: 63	n:1140000
LTBP4   1140000 perm   754 sec   (1511 perm/sec)   p_kst 5.526316e-05   p_cons 2.516053e-01   p_joint 5.815789e-04

Joint ci ratio: 1.518529e-01	ci left: 5.351513e-04	ci right 6.239172e-04	k: 665	n:1150000
Cons ci ratio: 6.304093e-03	ci left: 2.508288e-01	ci right 2.524159e-01	k: 289365	n:1150000
KS ci ratio: 4.899862e-01	ci left: 4.209671e-05	ci right 7.009022e-05	k: 63	n:1150000
LTBP4   1150000 perm   765 sec   (1503 perm/sec)   p_kst 5.478261e-05   p_cons 2.516217e-01   p_joint 5.782609e-04

Joint ci ratio: 1.515122e-01	ci left: 5.330259e-04	ci right 6.212229e-04	k: 668	n:1160000
Cons ci ratio: 6.276175e-03	ci left: 2.508734e-01	ci right 2.524537e-01	k: 291929	n:1160000
KS ci ratio: 4.899863e-01	ci left: 4.173380e-05	ci right 6.948600e-05	k: 63	n:1160000
LTBP4   1160000 perm   776 sec   (1495 perm/sec)   p_kst 5.431034e-05   p_cons 2.516629e-01   p_joint 5.758621e-04

Joint ci ratio: 1.508373e-01	ci left: 5.334044e-04	ci right 6.212354e-04	k: 674	n:1170000
Cons ci ratio: 6.249546e-03	ci left: 2.508617e-01	ci right 2.524352e-01	k: 294428	n:1170000
KS ci ratio: 4.862024e-01	ci left: 4.212657e-05	ci right 6.985124e-05	k: 64	n:1170000
LTBP4   1170000 perm   787 sec   (1487 perm/sec)   p_kst 5.470085e-05   p_cons 2.516479e-01   p_joint 5.760684e-04

Joint ci ratio: 1.586751e-01	ci left: 4.759298e-04	ci right 5.587572e-04	k: 609	n:1180000
Cons ci ratio: 6.223169e-03	ci left: 2.508553e-01	ci right 2.524221e-01	k: 296933	n:1180000
KS ci ratio: 4.862026e-01	ci left: 4.176956e-05	ci right 6.925929e-05	k: 64	n:1180000
LTBP4   1180000 perm   798 sec   (1478 perm/sec)   p_kst 5.423729e-05   p_cons 2.516381e-01   p_joint 5.161017e-04

Joint ci ratio: 1.575171e-01	ci left: 4.791943e-04	ci right 5.619237e-04	k: 618	n:1190000
Cons ci ratio: 6.197110e-03	ci left: 2.508499e-01	ci right 2.524101e-01	k: 299439	n:1190000
KS ci ratio: 4.825051e-01	ci left: 4.215623e-05	ci right 6.961951e-05	k: 65	n:1190000
LTBP4   1190000 perm   809 sec   (1470 perm/sec)   p_kst 5.462185e-05   p_cons 2.516294e-01   p_joint 5.193277e-04

Joint ci ratio: 1.570106e-01	ci left: 4.784032e-04	ci right 5.607054e-04	k: 622	n:1200000
Cons ci ratio: 6.172386e-03	ci left: 2.507830e-01	ci right 2.523365e-01	k: 301871	n:1200000
KS ci ratio: 4.825052e-01	ci left: 4.180493e-05	ci right 6.903935e-05	k: 65	n:1200000
LTBP4   1200000 perm   820 sec   (1463 perm/sec)   p_kst 5.416667e-05   p_cons 2.515592e-01   p_joint 5.183333e-04

Joint ci ratio: 1.560120e-01	ci left: 4.808021e-04	ci right 5.629418e-04	k: 630	n:1210000
Cons ci ratio: 6.147470e-03	ci left: 2.507469e-01	ci right 2.522939e-01	k: 304339	n:1210000
KS ci ratio: 4.753563e-01	ci left: 4.291271e-05	ci right 7.031983e-05	k: 67	n:1210000
LTBP4   1210000 perm   832 sec   (1455 perm/sec)   p_kst 5.537190e-05   p_cons 2.515198e-01   p_joint 5.206612e-04

Joint ci ratio: 1.550321e-01	ci left: 4.831633e-04	ci right 5.651398e-04	k: 638	n:1220000
Cons ci ratio: 6.121880e-03	ci left: 2.507712e-01	ci right 2.523119e-01	k: 306880	n:1220000
KS ci ratio: 4.753564e-01	ci left: 4.256097e-05	ci right 6.974344e-05	k: 67	n:1220000
LTBP4   1220000 perm   843 sec   (1447 perm/sec)   p_kst 5.491803e-05   p_cons 2.515410e-01   p_joint 5.229508e-04

Joint ci ratio: 1.544291e-01	ci left: 4.831428e-04	ci right 5.647675e-04	k: 643	n:1230000
Cons ci ratio: 6.097923e-03	ci left: 2.507139e-01	ci right 2.522482e-01	k: 309321	n:1230000
KS ci ratio: 4.753565e-01	ci left: 4.221494e-05	ci right 6.917643e-05	k: 67	n:1230000
LTBP4   1230000 perm   854 sec   (1439 perm/sec)   p_kst 5.447154e-05   p_cons 2.514805e-01   p_joint 5.227642e-04

Joint ci ratio: 1.538331e-01	ci left: 4.831233e-04	ci right 5.644005e-04	k: 648	n:1240000
Cons ci ratio: 6.073256e-03	ci left: 2.507188e-01	ci right 2.522469e-01	k: 311838	n:1240000
KS ci ratio: 4.718992e-01	ci left: 4.258465e-05	ci right 6.952062e-05	k: 68	n:1240000
LTBP4   1240000 perm   866 sec   (1432 perm/sec)   p_kst 5.483871e-05   p_cons 2.514823e-01   p_joint 5.225806e-04

Joint ci ratio: 1.534789e-01	ci left: 4.815660e-04	ci right 5.623776e-04	k: 651	n:1250000
Cons ci ratio: 6.048501e-03	ci left: 2.507476e-01	ci right 2.522696e-01	k: 314385	n:1250000
KS ci ratio: 4.718993e-01	ci left: 4.224397e-05	ci right 6.896446e-05	k: 68	n:1250000
LTBP4   1250000 perm   877 sec   (1425 perm/sec)   p_kst 5.440000e-05   p_cons 2.515080e-01   p_joint 5.208000e-04

Joint ci ratio: 1.577746e-01	ci left: 4.510472e-04	ci right 5.290565e-04	k: 616	n:1260000
Cons ci ratio: 6.023691e-03	ci left: 2.507981e-01	ci right 2.523142e-01	k: 316960	n:1260000
KS ci ratio: 4.652051e-01	ci left: 4.330853e-05	ci right 7.019059e-05	k: 70	n:1260000
LTBP4   1260000 perm   889 sec   (1417 perm/sec)   p_kst 5.555556e-05   p_cons 2.515556e-01   p_joint 4.888889e-04

Joint ci ratio: 1.571391e-01	ci left: 4.512775e-04	ci right 5.289827e-04	k: 621	n:1270000
Cons ci ratio: 5.999509e-03	ci left: 2.508274e-01	ci right 2.523375e-01	k: 319509	n:1270000
KS ci ratio: 4.652052e-01	ci left: 4.296752e-05	ci right 6.963791e-05	k: 70	n:1270000
LTBP4   1270000 perm   901 sec   (1410 perm/sec)   p_kst 5.511811e-05   p_cons 2.515819e-01   p_joint 4.889764e-04

Joint ci ratio: 1.568873e-01	ci left: 4.492530e-04	ci right 5.264739e-04	k: 623	n:1280000
Cons ci ratio: 5.975790e-03	ci left: 2.508453e-01	ci right 2.523496e-01	k: 322044	n:1280000
KS ci ratio: 4.652053e-01	ci left: 4.263183e-05	ci right 6.909387e-05	k: 70	n:1280000
LTBP4   1280000 perm   913 sec   (1402 perm/sec)   p_kst 5.468750e-05   p_cons 2.515969e-01   p_joint 4.867188e-04

Joint ci ratio: 1.562625e-01	ci left: 4.494945e-04	ci right 5.264205e-04	k: 628	n:1290000
Cons ci ratio: 5.952325e-03	ci left: 2.508645e-01	ci right 2.523630e-01	k: 324581	n:1290000
KS ci ratio: 4.587881e-01	ci left: 4.367123e-05	ci right 7.028793e-05	k: 72	n:1290000
LTBP4   1290000 perm   925 sec   (1395 perm/sec)   p_kst 5.581395e-05   p_cons 2.516132e-01   p_joint 4.868217e-04

Joint ci ratio: 1.575205e-01	ci left: 4.386464e-04	ci right 5.143773e-04	k: 618	n:1300000
Cons ci ratio: 5.930140e-03	ci left: 2.508197e-01	ci right 2.523122e-01	k: 327035	n:1300000
KS ci ratio: 4.587882e-01	ci left: 4.333529e-05	ci right 6.974726e-05	k: 72	n:1300000
LTBP4   1300000 perm   937 sec   (1388 perm/sec)   p_kst 5.538462e-05   p_cons 2.515654e-01   p_joint 4.753846e-04

Joint ci ratio: 1.566372e-01	ci left: 4.404314e-04	ci right 5.160040e-04	k: 625	n:1310000
Cons ci ratio: 5.907147e-03	ci left: 2.508426e-01	ci right 2.523295e-01	k: 329577	n:1310000
KS ci ratio: 4.556777e-01	ci left: 4.367990e-05	ci right 7.006556e-05	k: 73	n:1310000
LTBP4   1310000 perm   949 sec   (1381 perm/sec)   p_kst 5.572519e-05   p_cons 2.515855e-01   p_joint 4.770992e-04

Joint ci ratio: 1.566375e-01	ci left: 4.370948e-04	ci right 5.120950e-04	k: 625	n:1320000
Cons ci ratio: 5.885544e-03	ci left: 2.507933e-01	ci right 2.522744e-01	k: 332024	n:1320000
KS ci ratio: 4.556778e-01	ci left: 4.334899e-05	ci right 6.953476e-05	k: 73	n:1320000
LTBP4   1320000 perm   961 sec   (1374 perm/sec)   p_kst 5.530303e-05   p_cons 2.515333e-01   p_joint 4.734848e-04

Joint ci ratio: 1.557689e-01	ci left: 4.388658e-04	ci right 5.137133e-04	k: 632	n:1330000
Cons ci ratio: 5.863217e-03	ci left: 2.508064e-01	ci right 2.522819e-01	k: 334553	n:1330000
KS ci ratio: 4.526297e-01	ci left: 4.368890e-05	ci right 6.984930e-05	k: 74	n:1330000
LTBP4   1330000 perm   973 sec   (1367 perm/sec)   p_kst 5.563910e-05   p_cons 2.515436e-01   p_joint 4.751880e-04

Joint ci ratio: 1.546729e-01	ci left: 4.420463e-04	ci right 5.168567e-04	k: 641	n:1340000
Cons ci ratio: 5.842021e-03	ci left: 2.507626e-01	ci right 2.522325e-01	k: 337006	n:1340000
KS ci ratio: 4.496419e-01	ci left: 4.402432e-05	ci right 7.015857e-05	k: 75	n:1340000
LTBP4   1340000 perm   985 sec   (1361 perm/sec)   p_kst 5.597015e-05   p_cons 2.514970e-01   p_joint 4.783582e-04

Joint ci ratio: 1.540741e-01	ci left: 4.423325e-04	ci right 5.168748e-04	k: 646	n:1350000
Cons ci ratio: 5.820091e-03	ci left: 2.507816e-01	ci right 2.522461e-01	k: 339543	n:1350000
KS ci ratio: 4.496420e-01	ci left: 4.369821e-05	ci right 6.963888e-05	k: 75	n:1350000
LTBP4   1350000 perm   997 sec   (1354 perm/sec)   p_kst 5.555556e-05   p_cons 2.515133e-01   p_joint 4.785185e-04

Joint ci ratio: 1.536001e-01	ci left: 4.419080e-04	ci right 5.161285e-04	k: 650	n:1360000
Cons ci ratio: 5.798339e-03	ci left: 2.508048e-01	ci right 2.522639e-01	k: 342086	n:1360000
KS ci ratio: 4.496421e-01	ci left: 4.337690e-05	ci right 6.912683e-05	k: 75	n:1360000
LTBP4   1360000 perm   1010 sec   (1347 perm/sec)   p_kst 5.514706e-05   p_cons 2.515338e-01   p_joint 4.779412e-04

Joint ci ratio: 1.645904e-01	ci left: 3.798056e-04	ci right 4.486125e-04	k: 566	n:1370000
Cons ci ratio: 5.776694e-03	ci left: 2.508363e-01	ci right 2.522903e-01	k: 344641	n:1370000
KS ci ratio: 4.496422e-01	ci left: 4.306028e-05	ci right 6.862226e-05	k: 75	n:1370000
LTBP4   1370000 perm   1022 sec   (1341 perm/sec)   p_kst 5.474453e-05   p_cons 2.515628e-01   p_joint 4.131387e-04

Joint ci ratio: 1.638694e-01	ci left: 3.805277e-04	ci right 4.491336e-04	k: 571	n:1380000
Cons ci ratio: 5.755800e-03	ci left: 2.508342e-01	ci right 2.522828e-01	k: 347150	n:1380000
KS ci ratio: 4.467128e-01	ci left: 4.339108e-05	ci right 6.893092e-05	k: 76	n:1380000
LTBP4   1380000 perm   1034 sec   (1334 perm/sec)   p_kst 5.507246e-05   p_cons 2.515580e-01   p_joint 4.137681e-04

Joint ci ratio: 1.632994e-01	ci left: 3.805500e-04	ci right 4.488979e-04	k: 575	n:1390000
Cons ci ratio: 5.735284e-03	ci left: 2.508220e-01	ci right 2.522654e-01	k: 349645	n:1390000
KS ci ratio: 4.438400e-01	ci left: 4.371765e-05	ci right 6.923462e-05	k: 77	n:1390000
LTBP4   1390000 perm   1047 sec   (1328 perm/sec)   p_kst 5.539568e-05   p_cons 2.515432e-01   p_joint 4.136691e-04

Joint ci ratio: 1.624554e-01	ci left: 3.819428e-04	ci right 4.501517e-04	k: 581	n:1400000
Cons ci ratio: 5.714855e-03	ci left: 2.508186e-01	ci right 2.522568e-01	k: 352152	n:1400000
KS ci ratio: 4.438401e-01	ci left: 4.340538e-05	ci right 6.874009e-05	k: 77	n:1400000
LTBP4   1400000 perm   1059 sec   (1322 perm/sec)   p_kst 5.500000e-05   p_cons 2.515371e-01   p_joint 4.150000e-04

Joint ci ratio: 1.617620e-01	ci left: 3.826363e-04	ci right 4.506489e-04	k: 586	n:1410000
Cons ci ratio: 5.694912e-03	ci left: 2.507975e-01	ci right 2.522305e-01	k: 354634	n:1410000
KS ci ratio: 4.438402e-01	ci left: 4.309753e-05	ci right 6.825258e-05	k: 77	n:1410000
LTBP4   1410000 perm   1072 sec   (1315 perm/sec)   p_kst 5.460993e-05   p_cons 2.515135e-01   p_joint 4.156028e-04

Joint ci ratio: 1.708884e-01	ci left: 3.387700e-04	ci right 4.027333e-04	k: 525	n:1420000
Cons ci ratio: 5.674613e-03	ci left: 2.508140e-01	ci right 2.522420e-01	k: 357169	n:1420000
KS ci ratio: 4.438403e-01	ci left: 4.279403e-05	ci right 6.777193e-05	k: 77	n:1420000
LTBP4   1420000 perm   1085 sec   (1309 perm/sec)   p_kst 5.422535e-05   p_cons 2.515275e-01   p_joint 3.697183e-04

Joint ci ratio: 1.705645e-01	ci left: 3.377398e-04	ci right 4.013753e-04	k: 527	n:1430000
Cons ci ratio: 5.655076e-03	ci left: 2.507939e-01	ci right 2.522169e-01	k: 359652	n:1430000
KS ci ratio: 4.438403e-01	ci left: 4.249477e-05	ci right 6.729800e-05	k: 77	n:1430000
LTBP4   1430000 perm   1097 sec   (1303 perm/sec)   p_kst 5.384615e-05   p_cons 2.515049e-01   p_joint 3.685315e-04

Joint ci ratio: 1.718723e-01	ci left: 3.300768e-04	ci right 3.927947e-04	k: 519	n:1440000
Cons ci ratio: 5.635583e-03	ci left: 2.507846e-01	ci right 2.522025e-01	k: 362150	n:1440000
KS ci ratio: 4.438404e-01	ci left: 4.219966e-05	ci right 6.683066e-05	k: 77	n:1440000
LTBP4   1440000 perm   1110 sec   (1297 perm/sec)   p_kst 5.347222e-05   p_cons 2.514931e-01   p_joint 3.604167e-04

Joint ci ratio: 1.708891e-01	ci left: 3.317609e-04	ci right 3.944010e-04	k: 525	n:1450000
Cons ci ratio: 5.615365e-03	ci left: 2.508374e-01	ci right 2.522505e-01	k: 364738	n:1450000
KS ci ratio: 4.355432e-01	ci left: 4.374853e-05	ci right 6.866638e-05	k: 80	n:1450000
LTBP4   1450000 perm   1123 sec   (1291 perm/sec)   p_kst 5.517241e-05   p_cons 2.515434e-01   p_joint 3.620690e-04

Joint ci ratio: 1.705652e-01	ci left: 3.307998e-04	ci right 3.931280e-04	k: 527	n:1460000
Cons ci ratio: 5.595658e-03	ci left: 2.508696e-01	ci right 2.522780e-01	k: 367297	n:1460000
KS ci ratio: 4.355433e-01	ci left: 4.344888e-05	ci right 6.819607e-05	k: 80	n:1460000
LTBP4   1460000 perm   1136 sec   (1285 perm/sec)   p_kst 5.479452e-05   p_cons 2.515733e-01   p_joint 3.609589e-04

Joint ci ratio: 1.696041e-01	ci left: 3.324574e-04	ci right 3.947088e-04	k: 533	n:1470000
Cons ci ratio: 5.576882e-03	ci left: 2.508525e-01	ci right 2.522560e-01	k: 369784	n:1470000
KS ci ratio: 4.328794e-01	ci left: 4.375921e-05	ci right 6.848635e-05	k: 81	n:1470000
LTBP4   1470000 perm   1150 sec   (1279 perm/sec)   p_kst 5.510204e-05   p_cons 2.515537e-01   p_joint 3.625850e-04

Joint ci ratio: 1.752781e-01	ci left: 3.082290e-04	ci right 3.680791e-04	k: 499	n:1480000
Cons ci ratio: 5.557786e-03	ci left: 2.508700e-01	ci right 2.522688e-01	k: 372322	n:1480000
KS ci ratio: 4.328794e-01	ci left: 4.346354e-05	ci right 6.802360e-05	k: 81	n:1480000
LTBP4   1480000 perm   1163 sec   (1273 perm/sec)   p_kst 5.472973e-05   p_cons 2.515689e-01   p_joint 3.371622e-04

Joint ci ratio: 1.742356e-01	ci left: 3.100111e-04	ci right 3.698115e-04	k: 505	n:1490000
Cons ci ratio: 5.539664e-03	ci left: 2.508343e-01	ci right 2.522284e-01	k: 374781	n:1490000
KS ci ratio: 4.302638e-01	ci left: 4.377005e-05	ci right 6.831070e-05	k: 82	n:1490000
LTBP4   1490000 perm   1176 sec   (1267 perm/sec)   p_kst 5.503356e-05   p_cons 2.515309e-01   p_joint 3.389262e-04

Joint ci ratio: 1.733810e-01	ci left: 3.111327e-04	ci right 3.708243e-04	k: 510	n:1500000
Cons ci ratio: 5.520535e-03	ci left: 2.508797e-01	ci right 2.522692e-01	k: 377361	n:1500000
KS ci ratio: 4.302639e-01	ci left: 4.347825e-05	ci right 6.785530e-05	k: 82	n:1500000
LTBP4   1500000 perm   1189 sec   (1262 perm/sec)   p_kst 5.466667e-05   p_cons 2.515740e-01   p_joint 3.400000e-04

Joint ci ratio: 1.722053e-01	ci left: 3.135075e-04	ci right 3.732045e-04	k: 517	n:1510000
Cons ci ratio: 5.501652e-03	ci left: 2.509213e-01	ci right 2.523062e-01	k: 379936	n:1510000
KS ci ratio: 4.302639e-01	ci left: 4.319031e-05	ci right 6.740593e-05	k: 82	n:1510000
LTBP4   1510000 perm   1202 sec   (1256 perm/sec)   p_kst 5.430464e-05   p_cons 2.516132e-01   p_joint 3.423841e-04

Joint ci ratio: 1.717088e-01	ci left: 3.133337e-04	ci right 3.728078e-04	k: 520	n:1520000
Cons ci ratio: 5.484024e-03	ci left: 2.508893e-01	ci right 2.522696e-01	k: 382400	n:1520000
KS ci ratio: 4.302640e-01	ci left: 4.290617e-05	ci right 6.696247e-05	k: 82	n:1520000
LTBP4   1520000 perm   1216 sec   (1250 perm/sec)   p_kst 5.394737e-05   p_cons 2.515789e-01   p_joint 3.421053e-04

Joint ci ratio: 1.730432e-01	ci left: 3.062825e-04	ci right 3.649171e-04	k: 512	n:1530000
Cons ci ratio: 5.465454e-03	ci left: 2.509341e-01	ci right 2.523100e-01	k: 384981	n:1530000
KS ci ratio: 4.302641e-01	ci left: 4.262573e-05	ci right 6.652481e-05	k: 82	n:1530000
LTBP4   1530000 perm   1229 sec   (1245 perm/sec)   p_kst 5.359477e-05   p_cons 2.516216e-01   p_joint 3.346405e-04

Joint ci ratio: 1.723724e-01	ci left: 3.067788e-04	ci right 3.652571e-04	k: 516	n:1540000
Cons ci ratio: 5.447626e-03	ci left: 2.509401e-01	ci right 2.523115e-01	k: 387503	n:1540000
KS ci ratio: 4.251718e-01	ci left: 4.350782e-05	ci right 6.753055e-05	k: 84	n:1540000
LTBP4   1540000 perm   1243 sec   (1239 perm/sec)   p_kst 5.454545e-05   p_cons 2.516253e-01   p_joint 3.350649e-04

Joint ci ratio: 1.720400e-01	ci left: 3.060342e-04	ci right 3.642465e-04	k: 518	n:1550000
Cons ci ratio: 5.430325e-03	ci left: 2.509215e-01	ci right 2.522884e-01	k: 389987	n:1550000
KS ci ratio: 4.251719e-01	ci left: 4.322712e-05	ci right 6.709487e-05	k: 84	n:1550000
LTBP4   1550000 perm   1256 sec   (1234 perm/sec)   p_kst 5.419355e-05   p_cons 2.516045e-01   p_joint 3.341935e-04

Joint ci ratio: 1.717096e-01	ci left: 3.052994e-04	ci right 3.632487e-04	k: 520	n:1560000
Cons ci ratio: 5.412975e-03	ci left: 2.509179e-01	ci right 2.522804e-01	k: 392494	n:1560000
KS ci ratio: 4.251720e-01	ci left: 4.295002e-05	ci right 6.666478e-05	k: 84	n:1560000
LTBP4   1560000 perm   1270 sec   (1228 perm/sec)   p_kst 5.384615e-05   p_cons 2.515987e-01   p_joint 3.333333e-04

Joint ci ratio: 1.712174e-01	ci left: 3.051836e-04	ci right 3.629278e-04	k: 523	n:1570000
Cons ci ratio: 5.394915e-03	ci left: 2.509755e-01	ci right 2.523337e-01	k: 395097	n:1570000
KS ci ratio: 4.251721e-01	ci left: 4.267645e-05	ci right 6.624016e-05	k: 84	n:1570000
LTBP4   1570000 perm   1284 sec   (1223 perm/sec)   p_kst 5.350318e-05   p_cons 2.516541e-01   p_joint 3.331210e-04

Joint ci ratio: 1.704062e-01	ci left: 3.062814e-04	ci right 3.639305e-04	k: 528	n:1580000
Cons ci ratio: 5.377368e-03	ci left: 2.510089e-01	ci right 2.523629e-01	k: 397663	n:1580000
KS ci ratio: 4.202564e-01	ci left: 4.353750e-05	ci right 6.722065e-05	k: 86	n:1580000
LTBP4   1580000 perm   1298 sec   (1218 perm/sec)   p_kst 5.443038e-05   p_cons 2.516854e-01   p_joint 3.341772e-04

Joint ci ratio: 1.700850e-01	ci left: 3.055593e-04	ci right 3.629530e-04	k: 530	n:1590000
Cons ci ratio: 5.359580e-03	ci left: 2.510708e-01	ci right 2.524207e-01	k: 400275	n:1590000
KS ci ratio: 4.202565e-01	ci left: 4.326368e-05	ci right 6.679788e-05	k: 86	n:1590000
LTBP4   1590000 perm   1311 sec   (1213 perm/sec)   p_kst 5.408805e-05   p_cons 2.517453e-01   p_joint 3.333333e-04

Joint ci ratio: 1.696066e-01	ci left: 3.054449e-04	ci right 3.626392e-04	k: 533	n:1600000
Cons ci ratio: 5.342907e-03	ci left: 2.510658e-01	ci right 2.524114e-01	k: 402781	n:1600000
KS ci ratio: 4.202566e-01	ci left: 4.299328e-05	ci right 6.638039e-05	k: 86	n:1600000
LTBP4   1600000 perm   1325 sec   (1207 perm/sec)   p_kst 5.375000e-05   p_cons 2.517381e-01   p_joint 3.331250e-04

Joint ci ratio: 1.742378e-01	ci left: 2.869043e-04	ci right 3.422483e-04	k: 505	n:1610000
Cons ci ratio: 5.326274e-03	ci left: 2.510689e-01	ci right 2.524103e-01	k: 405300	n:1610000
KS ci ratio: 4.178619e-01	ci left: 4.328186e-05	ci right 6.665435e-05	k: 87	n:1610000
LTBP4   1610000 perm   1339 sec   (1202 perm/sec)   p_kst 5.403727e-05   p_cons 2.517391e-01   p_joint 3.136646e-04

Joint ci ratio: 1.738946e-01	ci left: 2.863141e-04	ci right 3.414240e-04	k: 507	n:1620000
Cons ci ratio: 5.309944e-03	ci left: 2.510614e-01	ci right 2.523987e-01	k: 407802	n:1620000
KS ci ratio: 4.178619e-01	ci left: 4.301468e-05	ci right 6.624290e-05	k: 87	n:1620000
LTBP4   1620000 perm   1354 sec   (1197 perm/sec)   p_kst 5.370370e-05   p_cons 2.517296e-01   p_joint 3.129630e-04

Joint ci ratio: 1.733834e-01	ci left: 2.863181e-04	ci right 3.412498e-04	k: 510	n:1630000
Cons ci ratio: 5.293211e-03	ci left: 2.510933e-01	ci right 2.524266e-01	k: 410368	n:1630000
KS ci ratio: 4.131927e-01	ci left: 4.384949e-05	ci right 6.719109e-05	k: 89	n:1630000
LTBP4   1630000 perm   1368 sec   (1192 perm/sec)   p_kst 5.460123e-05   p_cons 2.517595e-01   p_joint 3.128834e-04

Joint ci ratio: 1.733835e-01	ci left: 2.845722e-04	ci right 3.391690e-04	k: 510	n:1640000
Cons ci ratio: 5.277096e-03	ci left: 2.510920e-01	ci right 2.524211e-01	k: 412880	n:1640000
KS ci ratio: 4.131928e-01	ci left: 4.358211e-05	ci right 6.678139e-05	k: 89	n:1640000
LTBP4   1640000 perm   1382 sec   (1186 perm/sec)   p_kst 5.426829e-05   p_cons 2.517561e-01   p_joint 3.109756e-04

Joint ci ratio: 1.730453e-01	ci left: 2.840071e-04	ci right 3.383781e-04	k: 512	n:1650000
Cons ci ratio: 5.260400e-03	ci left: 2.511427e-01	ci right 2.524679e-01	k: 415478	n:1650000
KS ci ratio: 4.131929e-01	ci left: 4.331798e-05	ci right 6.637665e-05	k: 89	n:1650000
LTBP4   1650000 perm   1397 sec   (1181 perm/sec)   p_kst 5.393939e-05   p_cons 2.518048e-01   p_joint 3.103030e-04

Joint ci ratio: 1.727090e-01	ci left: 2.834489e-04	ci right 3.375965e-04	k: 514	n:1660000
Cons ci ratio: 5.245161e-03	ci left: 2.510995e-01	ci right 2.524206e-01	k: 417921	n:1660000
KS ci ratio: 4.109163e-01	ci left: 4.359698e-05	ci right 6.664132e-05	k: 90	n:1660000
LTBP4   1660000 perm   1411 sec   (1176 perm/sec)   p_kst 5.421687e-05   p_cons 2.517596e-01   p_joint 3.096386e-04

Joint ci ratio: 1.733840e-01	ci left: 2.794601e-04	ci right 3.330762e-04	k: 510	n:1670000
Cons ci ratio: 5.229114e-03	ci left: 2.511245e-01	ci right 2.524417e-01	k: 420477	n:1670000
KS ci ratio: 4.109163e-01	ci left: 4.333592e-05	ci right 6.624227e-05	k: 90	n:1670000
LTBP4   1670000 perm   1426 sec   (1171 perm/sec)   p_kst 5.389222e-05   p_cons 2.517826e-01   p_joint 3.053892e-04

Joint ci ratio: 1.730458e-01	ci left: 2.789355e-04	ci right 3.323357e-04	k: 512	n:1680000
Cons ci ratio: 5.213246e-03	ci left: 2.511468e-01	ci right 2.524600e-01	k: 423029	n:1680000
KS ci ratio: 4.109164e-01	ci left: 4.307797e-05	ci right 6.584798e-05	k: 90	n:1680000
LTBP4   1680000 perm   1440 sec   (1166 perm/sec)   p_kst 5.357143e-05   p_cons 2.518030e-01   p_joint 3.047619e-04

Joint ci ratio: 1.728774e-01	ci left: 2.778511e-04	ci right 3.309865e-04	k: 513	n:1690000
Cons ci ratio: 5.197490e-03	ci left: 2.511712e-01	ci right 2.524806e-01	k: 425585	n:1690000
KS ci ratio: 4.109165e-01	ci left: 4.282307e-05	ci right 6.545835e-05	k: 90	n:1690000
LTBP4   1690000 perm   1455 sec   (1162 perm/sec)   p_kst 5.325444e-05   p_cons 2.518254e-01   p_joint 3.035503e-04

Joint ci ratio: 1.723751e-01	ci left: 2.779051e-04	ci right 3.308804e-04	k: 516	n:1700000
Cons ci ratio: 5.181803e-03	ci left: 2.512006e-01	ci right 2.525062e-01	k: 428150	n:1700000
KS ci ratio: 4.086771e-01	ci left: 4.309876e-05	ci right 6.572186e-05	k: 91	n:1700000
LTBP4   1700000 perm   1470 sec   (1156 perm/sec)   p_kst 5.352941e-05   p_cons 2.518529e-01   p_joint 3.035294e-04

Joint ci ratio: 1.718772e-01	ci left: 2.779587e-04	ci right 3.307753e-04	k: 519	n:1710000
Cons ci ratio: 5.167259e-03	ci left: 2.511566e-01	ci right 2.524583e-01	k: 430590	n:1710000
KS ci ratio: 4.086771e-01	ci left: 4.284671e-05	ci right 6.533752e-05	k: 91	n:1710000
LTBP4   1710000 perm   1485 sec   (1152 perm/sec)   p_kst 5.321637e-05   p_cons 2.518070e-01   p_joint 3.035088e-04

Joint ci ratio: 1.710567e-01	ci left: 2.791249e-04	ci right 3.318838e-04	k: 524	n:1720000
Cons ci ratio: 5.152725e-03	ci left: 2.511213e-01	ci right 2.524191e-01	k: 433044	n:1720000
KS ci ratio: 4.086772e-01	ci left: 4.259760e-05	ci right 6.495765e-05	k: 91	n:1720000
LTBP4   1720000 perm   1500 sec   (1147 perm/sec)   p_kst 5.290698e-05   p_cons 2.517698e-01   p_joint 3.046512e-04

Joint ci ratio: 1.707318e-01	ci left: 2.786181e-04	ci right 3.311709e-04	k: 526	n:1730000
Cons ci ratio: 5.138187e-03	ci left: 2.510956e-01	ci right 2.523896e-01	k: 435514	n:1730000
KS ci ratio: 4.064740e-01	ci left: 4.287014e-05	ci right 6.521916e-05	k: 92	n:1730000
LTBP4   1730000 perm   1514 sec   (1142 perm/sec)   p_kst 5.317919e-05   p_cons 2.517422e-01   p_joint 3.040462e-04

Joint ci ratio: 1.705702e-01	ci left: 2.775670e-04	ci right 3.298669e-04	k: 527	n:1740000
Cons ci ratio: 5.123381e-03	ci left: 2.510989e-01	ci right 2.523893e-01	k: 438034	n:1740000
KS ci ratio: 4.064741e-01	ci left: 4.262376e-05	ci right 6.484434e-05	k: 92	n:1740000
LTBP4   1740000 perm   1529 sec   (1138 perm/sec)   p_kst 5.287356e-05   p_cons 2.517437e-01   p_joint 3.028736e-04

Joint ci ratio: 1.699277e-01	ci left: 2.781692e-04	ci right 3.303649e-04	k: 531	n:1750000
Cons ci ratio: 5.108818e-03	ci left: 2.510937e-01	ci right 2.523803e-01	k: 440539	n:1750000
KS ci ratio: 4.043062e-01	ci left: 4.289335e-05	ci right 6.510320e-05	k: 93	n:1750000
LTBP4   1750000 perm   1545 sec   (1133 perm/sec)   p_kst 5.314286e-05   p_cons 2.517366e-01   p_joint 3.034286e-04

Joint ci ratio: 1.749332e-01	ci left: 2.602785e-04	ci right 3.107079e-04	k: 501	n:1760000
Cons ci ratio: 5.094133e-03	ci left: 2.511066e-01	ci right 2.523896e-01	k: 443076	n:1760000
KS ci ratio: 4.000723e-01	ci left: 4.367105e-05	ci right 6.598402e-05	k: 95	n:1760000
LTBP4   1760000 perm   1560 sec   (1128 perm/sec)   p_kst 5.397727e-05   p_cons 2.517477e-01   p_joint 2.846591e-04

Joint ci ratio: 1.737259e-01	ci left: 2.625903e-04	ci right 3.130796e-04	k: 508	n:1770000
Cons ci ratio: 5.079315e-03	ci left: 2.511387e-01	ci right 2.524181e-01	k: 445647	n:1770000
KS ci ratio: 3.959687e-01	ci left: 4.444116e-05	ci right 6.685371e-05	k: 97	n:1770000
LTBP4   1770000 perm   1575 sec   (1124 perm/sec)   p_kst 5.480226e-05   p_cons 2.517780e-01   p_joint 2.870056e-04

Joint ci ratio: 1.732162e-01	ci left: 2.627273e-04	ci right 3.130793e-04	k: 511	n:1780000
Cons ci ratio: 5.065018e-03	ci left: 2.511412e-01	ci right 2.524170e-01	k: 448166	n:1780000
KS ci ratio: 3.939638e-01	ci left: 4.469749e-05	ci right 6.709544e-05	k: 98	n:1780000
LTBP4   1780000 perm   1591 sec   (1119 perm/sec)   p_kst 5.505618e-05   p_cons 2.517787e-01   p_joint 2.870787e-04

Joint ci ratio: 1.728789e-01	ci left: 2.623285e-04	ci right 3.124959e-04	k: 513	n:1790000
Cons ci ratio: 5.050369e-03	ci left: 2.511788e-01	ci right 2.524511e-01	k: 450748	n:1790000
KS ci ratio: 3.939638e-01	ci left: 4.444778e-05	ci right 6.672061e-05	k: 98	n:1790000
LTBP4   1790000 perm   1606 sec   (1115 perm/sec)   p_kst 5.474860e-05   p_cons 2.518145e-01   p_joint 2.865922e-04

Joint ci ratio: 1.722101e-01	ci left: 2.629974e-04	ci right 3.130779e-04	k: 517	n:1800000
Cons ci ratio: 5.036366e-03	ci left: 2.511771e-01	ci right 2.524459e-01	k: 453260	n:1800000
KS ci ratio: 3.919890e-01	ci left: 4.470150e-05	ci right 6.696013e-05	k: 99	n:1800000
LTBP4   1800000 perm   1621 sec   (1111 perm/sec)   p_kst 5.500000e-05   p_cons 2.518111e-01   p_joint 2.872222e-04

Joint ci ratio: 1.735560e-01	ci left: 2.573156e-04	ci right 3.067373e-04	k: 509	n:1810000
Cons ci ratio: 5.022472e-03	ci left: 2.511761e-01	ci right 2.524413e-01	k: 455773	n:1810000
KS ci ratio: 3.919891e-01	ci left: 4.445453e-05	ci right 6.659018e-05	k: 99	n:1810000
LTBP4   1810000 perm   1637 sec   (1106 perm/sec)   p_kst 5.469613e-05   p_cons 2.518083e-01   p_joint 2.812155e-04

Joint ci ratio: 1.728793e-01	ci left: 2.580043e-04	ci right 3.073449e-04	k: 513	n:1820000
Cons ci ratio: 5.008809e-03	ci left: 2.511662e-01	ci right 2.524280e-01	k: 458270	n:1820000
KS ci ratio: 3.919891e-01	ci left: 4.421028e-05	ci right 6.622430e-05	k: 99	n:1820000
LTBP4   1820000 perm   1652 sec   (1102 perm/sec)   p_kst 5.439560e-05   p_cons 2.517967e-01   p_joint 2.818681e-04

Joint ci ratio: 1.727115e-01	ci left: 2.571173e-04	ci right 3.062355e-04	k: 514	n:1830000
Cons ci ratio: 4.995221e-03	ci left: 2.511592e-01	ci right 2.524175e-01	k: 460772	n:1830000
KS ci ratio: 3.919892e-01	ci left: 4.396869e-05	ci right 6.586243e-05	k: 99	n:1830000
LTBP4   1830000 perm   1668 sec   (1097 perm/sec)   p_kst 5.409836e-05   p_cons 2.517880e-01   p_joint 2.808743e-04

Joint ci ratio: 1.720446e-01	ci left: 2.578000e-04	ci right 3.068388e-04	k: 518	n:1840000
Cons ci ratio: 4.981038e-03	ci left: 2.512055e-01	ci right 2.524605e-01	k: 463372	n:1840000
KS ci ratio: 3.881270e-01	ci left: 4.471008e-05	ci right 6.669752e-05	k: 101	n:1840000
LTBP4   1840000 perm   1684 sec   (1093 perm/sec)   p_kst 5.489130e-05   p_cons 2.518326e-01   p_joint 2.815217e-04

Joint ci ratio: 1.720447e-01	ci left: 2.564065e-04	ci right 3.051802e-04	k: 518	n:1850000
Cons ci ratio: 4.967119e-03	ci left: 2.512406e-01	ci right 2.524921e-01	k: 465952	n:1850000
KS ci ratio: 3.881270e-01	ci left: 4.446841e-05	ci right 6.633699e-05	k: 101	n:1850000
LTBP4   1850000 perm   1699 sec   (1089 perm/sec)   p_kst 5.459459e-05   p_cons 2.518659e-01   p_joint 2.800000e-04

Joint ci ratio: 1.715496e-01	ci left: 2.565715e-04	ci right 3.052217e-04	k: 521	n:1860000
Cons ci ratio: 4.953611e-03	ci left: 2.512526e-01	ci right 2.525008e-01	k: 468490	n:1860000
KS ci ratio: 3.881271e-01	ci left: 4.422933e-05	ci right 6.598034e-05	k: 101	n:1860000
LTBP4   1860000 perm   1715 sec   (1085 perm/sec)   p_kst 5.430108e-05   p_cons 2.518763e-01   p_joint 2.801075e-04

Joint ci ratio: 1.710588e-01	ci left: 2.567350e-04	ci right 3.052625e-04	k: 524	n:1870000
Cons ci ratio: 4.940095e-03	ci left: 2.512737e-01	ci right 2.525186e-01	k: 471045	n:1870000
KS ci ratio: 3.843768e-01	ci left: 4.495847e-05	ci right 6.680039e-05	k: 103	n:1870000
LTBP4   1870000 perm   1731 sec   (1081 perm/sec)   p_kst 5.508021e-05   p_cons 2.518957e-01   p_joint 2.802139e-04

Joint ci ratio: 1.705721e-01	ci left: 2.568969e-04	ci right 3.053026e-04	k: 527	n:1880000
Cons ci ratio: 4.926792e-03	ci left: 2.512865e-01	ci right 2.525281e-01	k: 473585	n:1880000
KS ci ratio: 3.843769e-01	ci left: 4.471933e-05	ci right 6.644507e-05	k: 103	n:1880000
LTBP4   1880000 perm   1747 sec   (1076 perm/sec)   p_kst 5.478723e-05   p_cons 2.519069e-01   p_joint 2.803191e-04

Joint ci ratio: 1.699296e-01	ci left: 2.575639e-04	ci right 3.058937e-04	k: 531	n:1890000
Cons ci ratio: 4.913763e-03	ci left: 2.512865e-01	ci right 2.525248e-01	k: 476101	n:1890000
KS ci ratio: 3.825421e-01	ci left: 4.496082e-05	ci right 6.667337e-05	k: 104	n:1890000
LTBP4   1890000 perm   1762 sec   (1072 perm/sec)   p_kst 5.502646e-05   p_cons 2.519053e-01   p_joint 2.809524e-04

Joint ci ratio: 1.692943e-01	ci left: 2.582242e-04	ci right 3.064783e-04	k: 535	n:1900000
Cons ci ratio: 4.900439e-03	ci left: 2.513170e-01	ci right 2.525521e-01	k: 478675	n:1900000
KS ci ratio: 3.807333e-01	ci left: 4.520000e-05	ci right 6.689903e-05	k: 105	n:1900000
LTBP4   1900000 perm   1778 sec   (1069 perm/sec)   p_kst 5.526316e-05   p_cons 2.519342e-01   p_joint 2.815789e-04

Joint ci ratio: 1.691367e-01	ci left: 2.573736e-04	ci right 3.054194e-04	k: 536	n:1910000
Cons ci ratio: 4.887399e-03	ci left: 2.513337e-01	ci right 2.525655e-01	k: 481223	n:1910000
KS ci ratio: 3.807334e-01	ci left: 4.496335e-05	ci right 6.654878e-05	k: 105	n:1910000
LTBP4   1910000 perm   1794 sec   (1064 perm/sec)   p_kst 5.497382e-05   p_cons 2.519492e-01   p_joint 2.806283e-04

Joint ci ratio: 1.688226e-01	ci left: 2.570307e-04	ci right 3.049144e-04	k: 538	n:1920000
Cons ci ratio: 4.874739e-03	ci left: 2.513288e-01	ci right 2.525574e-01	k: 483730	n:1920000
KS ci ratio: 3.807334e-01	ci left: 4.472917e-05	ci right 6.620217e-05	k: 105	n:1920000
LTBP4   1920000 perm   1811 sec   (1060 perm/sec)   p_kst 5.468750e-05   p_cons 2.519427e-01   p_joint 2.802083e-04

Joint ci ratio: 1.737280e-01	ci left: 2.408209e-04	ci right 2.871252e-04	k: 508	n:1930000
Cons ci ratio: 4.862070e-03	ci left: 2.513322e-01	ci right 2.525577e-01	k: 486253	n:1930000
KS ci ratio: 3.807335e-01	ci left: 4.449741e-05	ci right 6.585916e-05	k: 105	n:1930000
LTBP4   1930000 perm   1827 sec   (1056 perm/sec)   p_kst 5.440415e-05   p_cons 2.519446e-01   p_joint 2.632124e-04

Joint ci ratio: 1.733877e-01	ci left: 2.405657e-04	ci right 2.867208e-04	k: 510	n:1940000
Cons ci ratio: 4.849884e-03	ci left: 2.513057e-01	ci right 2.525280e-01	k: 488718	n:1940000
KS ci ratio: 3.807336e-01	ci left: 4.426804e-05	ci right 6.551968e-05	k: 105	n:1940000
LTBP4   1940000 perm   1844 sec   (1052 perm/sec)   p_kst 5.412371e-05   p_cons 2.519165e-01   p_joint 2.628866e-04

Joint ci ratio: 1.728810e-01	ci left: 2.408039e-04	ci right 2.868555e-04	k: 513	n:1950000
Cons ci ratio: 4.837269e-03	ci left: 2.513200e-01	ci right 2.525392e-01	k: 491262	n:1950000
KS ci ratio: 3.807336e-01	ci left: 4.404102e-05	ci right 6.518368e-05	k: 105	n:1950000
LTBP4   1950000 perm   1861 sec   (1048 perm/sec)   p_kst 5.384615e-05   p_cons 2.519292e-01   p_joint 2.630769e-04

Joint ci ratio: 1.723786e-01	ci left: 2.410397e-04	ci right 2.869886e-04	k: 516	n:1960000
Cons ci ratio: 4.824836e-03	ci left: 2.513276e-01	ci right 2.525436e-01	k: 493793	n:1960000
KS ci ratio: 3.807337e-01	ci left: 4.381632e-05	ci right 6.485111e-05	k: 105	n:1960000
LTBP4   1960000 perm   1877 sec   (1044 perm/sec)   p_kst 5.357143e-05   p_cons 2.519352e-01   p_joint 2.632653e-04

Joint ci ratio: 1.718806e-01	ci left: 2.412734e-04	ci right 2.871202e-04	k: 519	n:1970000
Cons ci ratio: 4.812914e-03	ci left: 2.513025e-01	ci right 2.525154e-01	k: 496260	n:1970000
KS ci ratio: 3.807337e-01	ci left: 4.359390e-05	ci right 6.452192e-05	k: 105	n:1970000
LTBP4   1970000 perm   1894 sec   (1040 perm/sec)   p_kst 5.329949e-05   p_cons 2.519086e-01   p_joint 2.634518e-04

Joint ci ratio: 1.717157e-01	ci left: 2.405382e-04	ci right 2.861969e-04	k: 520	n:1980000
Cons ci ratio: 4.800604e-03	ci left: 2.513151e-01	ci right 2.525250e-01	k: 498801	n:1980000
KS ci ratio: 3.807338e-01	ci left: 4.337373e-05	ci right 6.419606e-05	k: 105	n:1980000
LTBP4   1980000 perm   1911 sec   (1036 perm/sec)   p_kst 5.303030e-05   p_cons 2.519197e-01   p_joint 2.626263e-04

Joint ci ratio: 1.708975e-01	ci left: 2.417343e-04	ci right 2.873789e-04	k: 525	n:1990000
Cons ci ratio: 4.788190e-03	ci left: 2.513432e-01	ci right 2.525500e-01	k: 501373	n:1990000
KS ci ratio: 3.807338e-01	ci left: 4.315577e-05	ci right 6.387347e-05	k: 105	n:1990000
LTBP4   1990000 perm   1928 sec   (1032 perm/sec)   p_kst 5.276382e-05   p_cons 2.519462e-01   p_joint 2.638191e-04

Joint ci ratio: 1.707353e-01	ci left: 2.410043e-04	ci right 2.864633e-04	k: 526	n:2000000
Cons ci ratio: 4.776873e-03	ci left: 2.512920e-01	ci right 2.524957e-01	k: 503787	n:2000000
KS ci ratio: 3.807339e-01	ci left: 4.293999e-05	ci right 6.355410e-05	k: 105	n:2000000
LTBP4   2000000 perm   1945 sec   (1028 perm/sec)   p_kst 5.250000e-05   p_cons 2.518935e-01   p_joint 2.630000e-04

Joint ci ratio: 1.702514e-01	ci left: 2.412341e-04	ci right 2.865943e-04	k: 529	n:2010000
Cons ci ratio: 4.765277e-03	ci left: 2.512697e-01	ci right 2.524704e-01	k: 506258	n:2010000
KS ci ratio: 3.807339e-01	ci left: 4.272636e-05	ci right 6.323791e-05	k: 105	n:2010000
LTBP4   2010000 perm   1963 sec   (1024 perm/sec)   p_kst 5.223881e-05   p_cons 2.518697e-01   p_joint 2.631841e-04

Joint ci ratio: 1.718812e-01	ci left: 2.353013e-04	ci right 2.800134e-04	k: 519	n:2020000
Cons ci ratio: 4.753421e-03	ci left: 2.512748e-01	ci right 2.524725e-01	k: 508784	n:2020000
KS ci ratio: 3.807340e-01	ci left: 4.251484e-05	ci right 6.292485e-05	k: 105	n:2020000
LTBP4   2020000 perm   1980 sec   (1020 perm/sec)   p_kst 5.198020e-05   p_cons 2.518733e-01   p_joint 2.569307e-04

Joint ci ratio: 1.718813e-01	ci left: 2.341421e-04	ci right 2.786340e-04	k: 519	n:2030000
Cons ci ratio: 4.742026e-03	ci left: 2.512503e-01	ci right 2.524450e-01	k: 511250	n:2030000
KS ci ratio: 3.807340e-01	ci left: 4.230541e-05	ci right 6.261488e-05	k: 105	n:2030000
LTBP4   2030000 perm   1997 sec   (1016 perm/sec)   p_kst 5.172414e-05   p_cons 2.518473e-01   p_joint 2.556650e-04

Joint ci ratio: 1.713876e-01	ci left: 2.344018e-04	ci right 2.788019e-04	k: 522	n:2040000
Cons ci ratio: 4.730564e-03	ci left: 2.512378e-01	ci right 2.524296e-01	k: 513740	n:2040000
KS ci ratio: 3.771921e-01	ci left: 4.298504e-05	ci right 6.338129e-05	k: 107	n:2040000
LTBP4   2040000 perm   2014 sec   (1013 perm/sec)   p_kst 5.245098e-05   p_cons 2.518333e-01   p_joint 2.558824e-04

Joint ci ratio: 1.712241e-01	ci left: 2.337252e-04	ci right 2.779506e-04	k: 523	n:2050000
Cons ci ratio: 4.718660e-03	ci left: 2.512674e-01	ci right 2.524563e-01	k: 516316	n:2050000
KS ci ratio: 3.771921e-01	ci left: 4.277535e-05	ci right 6.307212e-05	k: 107	n:2050000
LTBP4   2050000 perm   2032 sec   (1009 perm/sec)   p_kst 5.219512e-05   p_cons 2.518615e-01   p_joint 2.551220e-04

Joint ci ratio: 1.704129e-01	ci left: 2.349141e-04	ci right 2.791321e-04	k: 528	n:2060000
Cons ci ratio: 4.707270e-03	ci left: 2.512627e-01	ci right 2.524487e-01	k: 518822	n:2060000
KS ci ratio: 3.754579e-01	ci left: 4.300723e-05	ci right 6.329709e-05	k: 108	n:2060000
LTBP4   2060000 perm   2049 sec   (1005 perm/sec)   p_kst 5.242718e-05   p_cons 2.518553e-01   p_joint 2.563107e-04

Joint ci ratio: 1.864354e-01	ci left: 1.936231e-04	ci right 2.338839e-04	k: 441	n:2070000
Cons ci ratio: 4.695432e-03	ci left: 2.513005e-01	ci right 2.524837e-01	k: 521416	n:2070000
KS ci ratio: 3.720599e-01	ci left: 4.367489e-05	ci right 6.404784e-05	k: 110	n:2070000
LTBP4   2070000 perm   2067 sec   (1002 perm/sec)   p_kst 5.314010e-05   p_cons 2.518918e-01   p_joint 2.130435e-04

Joint ci ratio: 1.860151e-01	ci left: 1.936089e-04	ci right 2.337658e-04	k: 443	n:2080000
Cons ci ratio: 4.684124e-03	ci left: 2.513025e-01	ci right 2.524828e-01	k: 523936	n:2080000
KS ci ratio: 3.720599e-01	ci left: 4.346492e-05	ci right 6.373992e-05	k: 110	n:2080000
LTBP4   2080000 perm   2084 sec   (998 perm/sec)   p_kst 5.288462e-05   p_cons 2.518923e-01   p_joint 2.129808e-04

Joint ci ratio: 1.855975e-01	ci left: 1.935950e-04	ci right 2.336487e-04	k: 445	n:2090000
Cons ci ratio: 4.673065e-03	ci left: 2.512910e-01	ci right 2.524685e-01	k: 526428	n:2090000
KS ci ratio: 3.703952e-01	ci left: 4.369078e-05	ci right 6.395785e-05	k: 111	n:2090000
LTBP4   2090000 perm   2102 sec   (994 perm/sec)   p_kst 5.311005e-05   p_cons 2.518794e-01   p_joint 2.129187e-04

Joint ci ratio: 1.853899e-01	ci left: 1.931272e-04	ci right 2.330343e-04	k: 446	n:2100000
Cons ci ratio: 4.661989e-03	ci left: 2.512873e-01	ci right 2.524620e-01	k: 528936	n:2100000
KS ci ratio: 3.703952e-01	ci left: 4.348273e-05	ci right 6.365329e-05	k: 111	n:2100000
LTBP4   2100000 perm   2119 sec   (991 perm/sec)   p_kst 5.285714e-05   p_cons 2.518743e-01   p_joint 2.123810e-04

Joint ci ratio: 1.847708e-01	ci left: 1.935678e-04	ci right 2.334175e-04	k: 449	n:2110000
Cons ci ratio: 4.650903e-03	ci left: 2.512907e-01	ci right 2.524626e-01	k: 531459	n:2110000
KS ci ratio: 3.703953e-01	ci left: 4.327665e-05	ci right 6.335162e-05	k: 111	n:2110000
LTBP4   2110000 perm   2136 sec   (988 perm/sec)   p_kst 5.260664e-05   p_cons 2.518763e-01   p_joint 2.127962e-04

Joint ci ratio: 1.866472e-01	ci left: 1.886068e-04	ci right 2.278741e-04	k: 440	n:2120000
Cons ci ratio: 4.639815e-03	ci left: 2.513007e-01	ci right 2.524698e-01	k: 533996	n:2120000
KS ci ratio: 3.703953e-01	ci left: 4.307251e-05	ci right 6.305279e-05	k: 111	n:2120000
LTBP4   2120000 perm   2154 sec   (984 perm/sec)   p_kst 5.235849e-05   p_cons 2.518849e-01   p_joint 2.075472e-04

Joint ci ratio: 1.866473e-01	ci left: 1.877213e-04	ci right 2.268043e-04	k: 440	n:2130000
Cons ci ratio: 4.628726e-03	ci left: 2.513171e-01	ci right 2.524835e-01	k: 536547	n:2130000
KS ci ratio: 3.703954e-01	ci left: 4.287030e-05	ci right 6.275677e-05	k: 111	n:2130000
LTBP4   2130000 perm   2172 sec   (981 perm/sec)   p_kst 5.211268e-05   p_cons 2.519000e-01   p_joint 2.065728e-04

Joint ci ratio: 1.860156e-01	ci left: 1.881806e-04	ci right 2.272117e-04	k: 443	n:2140000
Cons ci ratio: 4.617801e-03	ci left: 2.513264e-01	ci right 2.524901e-01	k: 539083	n:2140000
KS ci ratio: 3.703954e-01	ci left: 4.266997e-05	ci right 6.246352e-05	k: 111	n:2140000
LTBP4   2140000 perm   2190 sec   (977 perm/sec)   p_kst 5.186916e-05   p_cons 2.519079e-01   p_joint 2.070093e-04

Joint ci ratio: 1.853903e-01	ci left: 1.886358e-04	ci right 2.276150e-04	k: 446	n:2150000
Cons ci ratio: 4.606771e-03	ci left: 2.513505e-01	ci right 2.525115e-01	k: 541651	n:2150000
KS ci ratio: 3.671318e-01	ci left: 4.331554e-05	ci right 6.318904e-05	k: 113	n:2150000
LTBP4   2150000 perm   2208 sec   (974 perm/sec)   p_kst 5.255814e-05   p_cons 2.519307e-01   p_joint 2.074419e-04

Joint ci ratio: 1.849770e-01	ci left: 1.886455e-04	ci right 2.275300e-04	k: 448	n:2160000
Cons ci ratio: 4.596119e-03	ci left: 2.513499e-01	ci right 2.525082e-01	k: 544166	n:2160000
KS ci ratio: 3.655321e-01	ci left: 4.353535e-05	ci right 6.340190e-05	k: 114	n:2160000
LTBP4   2160000 perm   2226 sec   (970 perm/sec)   p_kst 5.277778e-05   p_cons 2.519287e-01   p_joint 2.074074e-04

Joint ci ratio: 1.841584e-01	ci left: 1.895343e-04	ci right 2.284099e-04	k: 452	n:2170000
Cons ci ratio: 4.585603e-03	ci left: 2.513442e-01	ci right 2.524998e-01	k: 546670	n:2170000
KS ci ratio: 3.639531e-01	ci left: 4.375332e-05	ci right 6.361260e-05	k: 115	n:2170000
LTBP4   2170000 perm   2244 sec   (967 perm/sec)   p_kst 5.299539e-05   p_cons 2.519217e-01   p_joint 2.082949e-04

Joint ci ratio: 1.831503e-01	ci left: 1.908530e-04	ci right 2.297610e-04	k: 457	n:2180000
Cons ci ratio: 4.575436e-03	ci left: 2.513156e-01	ci right 2.524685e-01	k: 549124	n:2180000
KS ci ratio: 3.623943e-01	ci left: 4.396948e-05	ci right 6.382120e-05	k: 116	n:2180000
LTBP4   2180000 perm   2263 sec   (964 perm/sec)   p_kst 5.321101e-05   p_cons 2.518917e-01   p_joint 2.096330e-04

Joint ci ratio: 1.829507e-01	ci left: 1.904173e-04	ci right 2.291894e-04	k: 458	n:2190000
Cons ci ratio: 4.564701e-03	ci left: 2.513398e-01	ci right 2.524901e-01	k: 551693	n:2190000
KS ci ratio: 3.623944e-01	ci left: 4.376870e-05	ci right 6.352978e-05	k: 116	n:2190000
LTBP4   2190000 perm   2281 sec   (960 perm/sec)   p_kst 5.296804e-05   p_cons 2.519146e-01   p_joint 2.091324e-04

Joint ci ratio: 1.821586e-01	ci left: 1.912868e-04	ci right 2.300488e-04	k: 462	n:2200000
Cons ci ratio: 4.554201e-03	ci left: 2.513505e-01	ci right 2.524983e-01	k: 554233	n:2200000
KS ci ratio: 3.623944e-01	ci left: 4.356976e-05	ci right 6.324101e-05	k: 116	n:2200000
LTBP4   2200000 perm   2299 sec   (957 perm/sec)   p_kst 5.272727e-05   p_cons 2.519241e-01   p_joint 2.100000e-04

Joint ci ratio: 1.881475e-01	ci left: 1.779070e-04	ci right 2.152785e-04	k: 433	n:2210000
Cons ci ratio: 4.543368e-03	ci left: 2.513947e-01	ci right 2.525399e-01	k: 556847	n:2210000
KS ci ratio: 3.608555e-01	ci left: 4.378399e-05	ci right 6.344828e-05	k: 117	n:2210000
LTBP4   2210000 perm   2318 sec   (954 perm/sec)   p_kst 5.294118e-05   p_cons 2.519670e-01   p_joint 1.959276e-04

Joint ci ratio: 1.881476e-01	ci left: 1.771056e-04	ci right 2.143088e-04	k: 433	n:2220000
Cons ci ratio: 4.532900e-03	ci left: 2.514146e-01	ci right 2.525572e-01	k: 559408	n:2220000
KS ci ratio: 3.608556e-01	ci left: 4.358676e-05	ci right 6.316248e-05	k: 117	n:2220000
LTBP4   2220000 perm   2336 sec   (950 perm/sec)   p_kst 5.270270e-05   p_cons 2.519856e-01   p_joint 1.950450e-04

Joint ci ratio: 1.903539e-01	ci left: 1.720395e-04	ci right 2.086513e-04	k: 423	n:2230000
Cons ci ratio: 4.522429e-03	ci left: 2.514406e-01	ci right 2.525807e-01	k: 561983	n:2230000
KS ci ratio: 3.608556e-01	ci left: 4.339130e-05	ci right 6.287924e-05	k: 117	n:2230000
LTBP4   2230000 perm   2354 sec   (947 perm/sec)   p_kst 5.246637e-05   p_cons 2.520103e-01   p_joint 1.896861e-04

Joint ci ratio: 1.894622e-01	ci left: 1.729723e-04	ci right 2.095903e-04	k: 427	n:2240000
Cons ci ratio: 4.512521e-03	ci left: 2.514253e-01	ci right 2.525628e-01	k: 564466	n:2240000
KS ci ratio: 3.593362e-01	ci left: 4.360363e-05	ci right 6.308517e-05	k: 118	n:2240000
LTBP4   2240000 perm   2372 sec   (944 perm/sec)   p_kst 5.267857e-05   p_cons 2.519938e-01   p_joint 1.906250e-04

Joint ci ratio: 1.890211e-01	ci left: 1.730503e-04	ci right 2.095897e-04	k: 429	n:2250000
Cons ci ratio: 4.502376e-03	ci left: 2.514355e-01	ci right 2.525705e-01	k: 567006	n:2250000
KS ci ratio: 3.578358e-01	ci left: 4.381425e-05	ci right 6.328911e-05	k: 119	n:2250000
LTBP4   2250000 perm   2391 sec   (941 perm/sec)   p_kst 5.288889e-05   p_cons 2.520027e-01   p_joint 1.906667e-04

Joint ci ratio: 1.892414e-01	ci left: 1.718631e-04	ci right 2.081990e-04	k: 428	n:2260000
Cons ci ratio: 4.492836e-03	ci left: 2.514005e-01	ci right 2.525329e-01	k: 569444	n:2260000
KS ci ratio: 3.578358e-01	ci left: 4.362038e-05	ci right 6.300907e-05	k: 119	n:2260000
LTBP4   2260000 perm   2410 sec   (938 perm/sec)   p_kst 5.265487e-05   p_cons 2.519664e-01   p_joint 1.893805e-04

Joint ci ratio: 1.890212e-01	ci left: 1.715256e-04	ci right 2.077432e-04	k: 429	n:2270000
Cons ci ratio: 4.482943e-03	ci left: 2.514005e-01	ci right 2.525305e-01	k: 571961	n:2270000
KS ci ratio: 3.563541e-01	ci left: 4.382923e-05	ci right 6.321138e-05	k: 120	n:2270000
LTBP4   2270000 perm   2428 sec   (935 perm/sec)   p_kst 5.286344e-05   p_cons 2.519652e-01   p_joint 1.889868e-04

Joint ci ratio: 1.885832e-01	ci left: 1.716091e-04	ci right 2.077506e-04	k: 431	n:2280000
Cons ci ratio: 4.472876e-03	ci left: 2.514208e-01	ci right 2.525483e-01	k: 574524	n:2280000
KS ci ratio: 3.548906e-01	ci left: 4.403641e-05	ci right 6.341176e-05	k: 121	n:2280000
LTBP4   2280000 perm   2446 sec   (932 perm/sec)   p_kst 5.307018e-05   p_cons 2.519842e-01   p_joint 1.890351e-04

Joint ci ratio: 1.883653e-01	ci left: 1.712758e-04	ci right 2.073007e-04	k: 432	n:2290000
Cons ci ratio: 4.463419e-03	ci left: 2.513950e-01	ci right 2.525200e-01	k: 576982	n:2290000
KS ci ratio: 3.548906e-01	ci left: 4.384411e-05	ci right 6.313485e-05	k: 121	n:2290000
LTBP4   2290000 perm   2465 sec   (929 perm/sec)   p_kst 5.283843e-05   p_cons 2.519572e-01   p_joint 1.886463e-04

Joint ci ratio: 1.875012e-01	ci left: 1.721884e-04	ci right 2.082202e-04	k: 436	n:2300000
Cons ci ratio: 4.453744e-03	ci left: 2.513929e-01	ci right 2.525155e-01	k: 579494	n:2300000
KS ci ratio: 3.534450e-01	ci left: 4.404959e-05	ci right 6.333366e-05	k: 122	n:2300000
LTBP4   2300000 perm   2484 sec   (926 perm/sec)   p_kst 5.304348e-05   p_cons 2.519539e-01   p_joint 1.895652e-04

Joint ci ratio: 1.872870e-01	ci left: 1.718556e-04	ci right 2.077720e-04	k: 437	n:2310000
Cons ci ratio: 4.443943e-03	ci left: 2.514069e-01	ci right 2.525270e-01	k: 582043	n:2310000
KS ci ratio: 3.534450e-01	ci left: 4.385890e-05	ci right 6.305949e-05	k: 122	n:2310000
LTBP4   2310000 perm   2503 sec   (923 perm/sec)   p_kst 5.281385e-05   p_cons 2.519667e-01   p_joint 1.891775e-04

Joint ci ratio: 1.872871e-01	ci left: 1.711148e-04	ci right 2.068764e-04	k: 437	n:2320000
Cons ci ratio: 4.434277e-03	ci left: 2.514147e-01	ci right 2.525325e-01	k: 584578	n:2320000
KS ci ratio: 3.534451e-01	ci left: 4.366985e-05	ci right 6.278768e-05	k: 122	n:2320000
LTBP4   2320000 perm   2522 sec   (920 perm/sec)   p_kst 5.258621e-05   p_cons 2.519733e-01   p_joint 1.883621e-04

Joint ci ratio: 1.870737e-01	ci left: 1.707895e-04	ci right 2.064378e-04	k: 438	n:2330000
Cons ci ratio: 4.424881e-03	ci left: 2.514049e-01	ci right 2.525202e-01	k: 587072	n:2330000
KS ci ratio: 3.534451e-01	ci left: 4.348243e-05	ci right 6.251821e-05	k: 122	n:2330000
LTBP4   2330000 perm   2541 sec   (917 perm/sec)   p_kst 5.236052e-05   p_cons 2.519622e-01   p_joint 1.879828e-04

Joint ci ratio: 1.868611e-01	ci left: 1.704670e-04	ci right 2.060030e-04	k: 439	n:2340000
Cons ci ratio: 4.415980e-03	ci left: 2.513580e-01	ci right 2.524708e-01	k: 589479	n:2340000
KS ci ratio: 3.534451e-01	ci left: 4.329660e-05	ci right 6.225104e-05	k: 122	n:2340000
LTBP4   2340000 perm   2560 sec   (914 perm/sec)   p_kst 5.213675e-05   p_cons 2.519141e-01   p_joint 1.876068e-04

Joint ci ratio: 1.866491e-01	ci left: 1.701472e-04	ci right 2.055718e-04	k: 440	n:2350000
Cons ci ratio: 4.406416e-03	ci left: 2.513727e-01	ci right 2.524832e-01	k: 592030	n:2350000
KS ci ratio: 3.520170e-01	ci left: 4.350019e-05	ci right 6.244922e-05	k: 123	n:2350000
LTBP4   2350000 perm   2579 sec   (911 perm/sec)   p_kst 5.234043e-05   p_cons 2.519277e-01   p_joint 1.872340e-04

Joint ci ratio: 1.894631e-01	ci left: 1.641770e-04	ci right 1.989333e-04	k: 427	n:2360000
Cons ci ratio: 4.397522e-03	ci left: 2.513352e-01	ci right 2.524433e-01	k: 594458	n:2360000
KS ci ratio: 3.520171e-01	ci left: 4.331587e-05	ci right 6.218461e-05	k: 123	n:2360000
LTBP4   2360000 perm   2599 sec   (908 perm/sec)   p_kst 5.211864e-05   p_cons 2.518890e-01   p_joint 1.809322e-04

Joint ci ratio: 1.892422e-01	ci left: 1.638863e-04	ci right 1.985358e-04	k: 428	n:2370000
Cons ci ratio: 4.388072e-03	ci left: 2.513504e-01	ci right 2.524561e-01	k: 597010	n:2370000
KS ci ratio: 3.506061e-01	ci left: 4.351781e-05	ci right 6.238125e-05	k: 124	n:2370000
LTBP4   2370000 perm   2618 sec   (905 perm/sec)   p_kst 5.232068e-05   p_cons 2.519030e-01   p_joint 1.805907e-04

Joint ci ratio: 1.896850e-01	ci left: 1.623972e-04	ci right 1.968215e-04	k: 426	n:2380000
Cons ci ratio: 4.378682e-03	ci left: 2.513654e-01	ci right 2.524688e-01	k: 599562	n:2380000
KS ci ratio: 3.506062e-01	ci left: 4.333496e-05	ci right 6.211915e-05	k: 124	n:2380000
LTBP4   2380000 perm   2637 sec   (902 perm/sec)   p_kst 5.210084e-05   p_cons 2.519168e-01   p_joint 1.789916e-04

Joint ci ratio: 1.894633e-01	ci left: 1.621162e-04	ci right 1.964362e-04	k: 427	n:2390000
Cons ci ratio: 4.369474e-03	ci left: 2.513698e-01	ci right 2.524710e-01	k: 602089	n:2390000
KS ci ratio: 3.492121e-01	ci left: 4.353529e-05	ci right 6.231427e-05	k: 125	n:2390000
LTBP4   2390000 perm   2657 sec   (900 perm/sec)   p_kst 5.230126e-05   p_cons 2.519201e-01   p_joint 1.786611e-04

Joint ci ratio: 1.894634e-01	ci left: 1.614407e-04	ci right 1.956177e-04	k: 427	n:2400000
Cons ci ratio: 4.360141e-03	ci left: 2.513900e-01	ci right 2.524889e-01	k: 604654	n:2400000
KS ci ratio: 3.492121e-01	ci left: 4.335389e-05	ci right 6.205463e-05	k: 125	n:2400000
LTBP4   2400000 perm   2676 sec   (897 perm/sec)   p_kst 5.208333e-05   p_cons 2.519392e-01   p_joint 1.779167e-04

Joint ci ratio: 1.890223e-01	ci left: 1.615614e-04	ci right 1.956752e-04	k: 429	n:2410000
Cons ci ratio: 4.350863e-03	ci left: 2.514105e-01	ci right 2.525071e-01	k: 607220	n:2410000
KS ci ratio: 3.478345e-01	ci left: 4.355261e-05	ci right 6.224826e-05	k: 126	n:2410000
LTBP4   2410000 perm   2696 sec   (894 perm/sec)   p_kst 5.228216e-05   p_cons 2.519585e-01   p_joint 1.780083e-04

Joint ci ratio: 1.883663e-01	ci left: 1.620749e-04	ci right 1.961648e-04	k: 432	n:2420000
Cons ci ratio: 4.341967e-03	ci left: 2.514027e-01	ci right 2.524971e-01	k: 609718	n:2420000
KS ci ratio: 3.478346e-01	ci left: 4.337264e-05	ci right 6.199104e-05	k: 126	n:2420000
LTBP4   2420000 perm   2715 sec   (891 perm/sec)   p_kst 5.206612e-05   p_cons 2.519496e-01   p_joint 1.785124e-04

Joint ci ratio: 1.877171e-01	ci left: 1.625844e-04	ci right 1.966501e-04	k: 435	n:2430000
Cons ci ratio: 4.333163e-03	ci left: 2.513917e-01	ci right 2.524838e-01	k: 612208	n:2430000
KS ci ratio: 3.464731e-01	ci left: 4.356980e-05	ci right 6.218319e-05	k: 127	n:2430000
LTBP4   2430000 perm   2735 sec   (888 perm/sec)   p_kst 5.226337e-05   p_cons 2.519374e-01   p_joint 1.790123e-04

Joint ci ratio: 1.870745e-01	ci left: 1.630899e-04	ci right 1.971313e-04	k: 438	n:2440000
Cons ci ratio: 4.324093e-03	ci left: 2.514086e-01	ci right 2.524985e-01	k: 614766	n:2440000
KS ci ratio: 3.437975e-01	ci left: 4.413987e-05	ci right 6.281878e-05	k: 129	n:2440000
LTBP4   2440000 perm   2755 sec   (886 perm/sec)   p_kst 5.286885e-05   p_cons 2.519533e-01   p_joint 1.795082e-04

Joint ci ratio: 1.870746e-01	ci left: 1.624242e-04	ci right 1.963267e-04	k: 438	n:2450000
Cons ci ratio: 4.315495e-03	ci left: 2.513891e-01	ci right 2.524767e-01	k: 617235	n:2450000
KS ci ratio: 3.437976e-01	ci left: 4.395970e-05	ci right 6.256238e-05	k: 129	n:2450000
LTBP4   2450000 perm   2775 sec   (883 perm/sec)   p_kst 5.265306e-05   p_cons 2.519327e-01   p_joint 1.787755e-04

Joint ci ratio: 1.866499e-01	ci left: 1.625390e-04	ci right 1.963796e-04	k: 440	n:2460000
Cons ci ratio: 4.306698e-03	ci left: 2.513917e-01	ci right 2.524771e-01	k: 619758	n:2460000
KS ci ratio: 3.437976e-01	ci left: 4.378101e-05	ci right 6.230807e-05	k: 129	n:2460000
LTBP4   2460000 perm   2795 sec   (880 perm/sec)   p_kst 5.243902e-05   p_cons 2.519341e-01   p_joint 1.788618e-04

Joint ci ratio: 1.862281e-01	ci left: 1.626528e-04	ci right 1.964320e-04	k: 442	n:2470000
Cons ci ratio: 4.298217e-03	ci left: 2.513713e-01	ci right 2.524544e-01	k: 622224	n:2470000
KS ci ratio: 3.437976e-01	ci left: 4.360375e-05	ci right 6.205581e-05	k: 129	n:2470000
LTBP4   2470000 perm   2816 sec   (877 perm/sec)   p_kst 5.222672e-05   p_cons 2.519126e-01   p_joint 1.789474e-04

Joint ci ratio: 1.860183e-01	ci left: 1.623814e-04	ci right 1.960619e-04	k: 443	n:2480000
Cons ci ratio: 4.289700e-03	ci left: 2.513586e-01	ci right 2.524396e-01	k: 624709	n:2480000
KS ci ratio: 3.437977e-01	ci left: 4.342793e-05	ci right 6.180558e-05	k: 129	n:2480000
LTBP4   2480000 perm   2836 sec   (874 perm/sec)   p_kst 5.201613e-05   p_cons 2.518988e-01   p_joint 1.786290e-04

Joint ci ratio: 1.860183e-01	ci left: 1.617293e-04	ci right 1.952745e-04	k: 443	n:2490000
Cons ci ratio: 4.281091e-03	ci left: 2.513585e-01	ci right 2.524373e-01	k: 627225	n:2490000
KS ci ratio: 3.437977e-01	ci left: 4.325352e-05	ci right 6.155737e-05	k: 129	n:2490000
LTBP4   2490000 perm   2856 sec   (872 perm/sec)   p_kst 5.180723e-05   p_cons 2.518976e-01   p_joint 1.779116e-04

Joint ci ratio: 1.856008e-01	ci left: 1.618451e-04	ci right 1.953306e-04	k: 445	n:2500000
Cons ci ratio: 4.272266e-03	ci left: 2.513820e-01	ci right 2.524586e-01	k: 629800	n:2500000
KS ci ratio: 3.437977e-01	ci left: 4.308051e-05	ci right 6.131114e-05	k: 129	n:2500000
LTBP4   2500000 perm   2877 sec   (869 perm/sec)   p_kst 5.160000e-05   p_cons 2.519200e-01   p_joint 1.780000e-04

Joint ci ratio: 1.856009e-01	ci left: 1.612003e-04	ci right 1.945524e-04	k: 445	n:2510000
Cons ci ratio: 4.263712e-03	ci left: 2.513861e-01	ci right 2.524606e-01	k: 632327	n:2510000
KS ci ratio: 3.437978e-01	ci left: 4.290887e-05	ci right 6.106687e-05	k: 129	n:2510000
LTBP4   2510000 perm   2897 sec   (867 perm/sec)   p_kst 5.139442e-05   p_cons 2.519231e-01   p_joint 1.772908e-04

Joint ci ratio: 1.853932e-01	ci left: 1.609390e-04	ci right 1.941956e-04	k: 446	n:2520000
Cons ci ratio: 4.255446e-03	ci left: 2.513693e-01	ci right 2.524416e-01	k: 634801	n:2520000
KS ci ratio: 3.437978e-01	ci left: 4.273860e-05	ci right 6.082455e-05	k: 129	n:2520000
LTBP4   2520000 perm   2917 sec   (864 perm/sec)   p_kst 5.119048e-05   p_cons 2.519052e-01   p_joint 1.769841e-04

Joint ci ratio: 1.845691e-01	ci left: 1.618107e-04	ci right 1.950822e-04	k: 450	n:2530000
Cons ci ratio: 4.247010e-03	ci left: 2.513719e-01	ci right 2.524421e-01	k: 637324	n:2530000
KS ci ratio: 3.437978e-01	ci left: 4.256967e-05	ci right 6.058413e-05	k: 129	n:2530000
LTBP4   2530000 perm   2937 sec   (861 perm/sec)   p_kst 5.098814e-05   p_cons 2.519067e-01   p_joint 1.778656e-04

Joint ci ratio: 1.841612e-01	ci left: 1.619248e-04	ci right 1.951379e-04	k: 452	n:2540000
Cons ci ratio: 4.238607e-03	ci left: 2.513761e-01	ci right 2.524442e-01	k: 639851	n:2540000
KS ci ratio: 3.437979e-01	ci left: 4.240207e-05	ci right 6.034562e-05	k: 129	n:2540000
LTBP4   2540000 perm   2958 sec   (859 perm/sec)   p_kst 5.078740e-05   p_cons 2.519098e-01   p_joint 1.779528e-04

Joint ci ratio: 1.847742e-01	ci left: 1.601676e-04	ci right 1.931419e-04	k: 449	n:2550000
Cons ci ratio: 4.229892e-03	ci left: 2.514123e-01	ci right 2.524784e-01	k: 642460	n:2550000
KS ci ratio: 3.437979e-01	ci left: 4.223579e-05	ci right 6.010897e-05	k: 129	n:2550000
LTBP4   2550000 perm   2978 sec   (856 perm/sec)   p_kst 5.058824e-05   p_cons 2.519451e-01   p_joint 1.760784e-04

Joint ci ratio: 1.845693e-01	ci left: 1.599145e-04	ci right 1.927961e-04	k: 450	n:2560000
Cons ci ratio: 4.221799e-03	ci left: 2.513976e-01	ci right 2.524616e-01	k: 644939	n:2560000
KS ci ratio: 3.437979e-01	ci left: 4.207080e-05	ci right 5.987417e-05	k: 129	n:2560000
LTBP4   2560000 perm   2999 sec   (854 perm/sec)   p_kst 5.039063e-05   p_cons 2.519293e-01   p_joint 1.757812e-04

Joint ci ratio: 1.841614e-01	ci left: 1.600346e-04	ci right 1.928600e-04	k: 452	n:2570000
Cons ci ratio: 4.213153e-03	ci left: 2.514366e-01	ci right 2.524986e-01	k: 647556	n:2570000
KS ci ratio: 3.437980e-01	ci left: 4.190710e-05	ci right 5.964120e-05	k: 129	n:2570000
LTBP4   2570000 perm   3019 sec   (851 perm/sec)   p_kst 5.019455e-05   p_cons 2.519673e-01   p_joint 1.758755e-04

Joint ci ratio: 1.837562e-01	ci left: 1.601538e-04	ci right 1.929233e-04	k: 454	n:2580000
Cons ci ratio: 4.204875e-03	ci left: 2.514471e-01	ci right 2.525070e-01	k: 650100	n:2580000
KS ci ratio: 3.437980e-01	ci left: 4.174467e-05	ci right 5.941003e-05	k: 129	n:2580000
LTBP4   2580000 perm   3040 sec   (849 perm/sec)   p_kst 5.000000e-05   p_cons 2.519767e-01   p_joint 1.759690e-04

Joint ci ratio: 1.831533e-01	ci left: 1.606405e-04	ci right 1.933899e-04	k: 457	n:2590000
Cons ci ratio: 4.196602e-03	ci left: 2.514613e-01	ci right 2.525192e-01	k: 652654	n:2590000
KS ci ratio: 3.424833e-01	ci left: 4.193633e-05	ci right 5.959989e-05	k: 130	n:2590000
LTBP4   2590000 perm   3061 sec   (846 perm/sec)   p_kst 5.019305e-05   p_cons 2.519900e-01   p_joint 1.764479e-04

Joint ci ratio: 1.858099e-01	ci left: 1.552535e-04	ci right 1.874155e-04	k: 444	n:2600000
Cons ci ratio: 4.188237e-03	ci left: 2.514881e-01	ci right 2.525440e-01	k: 655241	n:2600000
KS ci ratio: 3.398983e-01	ci left: 4.247836e-05	ci right 6.020555e-05	k: 132	n:2600000
LTBP4   2600000 perm   3082 sec   (844 perm/sec)   p_kst 5.076923e-05   p_cons 2.520158e-01   p_joint 1.707692e-04

Joint ci ratio: 1.856015e-01	ci left: 1.550240e-04	ci right 1.870984e-04	k: 445	n:2610000
Cons ci ratio: 4.180339e-03	ci left: 2.514772e-01	ci right 2.525310e-01	k: 657730	n:2610000
KS ci ratio: 3.386277e-01	ci left: 4.266612e-05	ci right 6.039053e-05	k: 133	n:2610000
LTBP4   2610000 perm   3103 sec   (841 perm/sec)   p_kst 5.095785e-05   p_cons 2.520038e-01   p_joint 1.704981e-04

Joint ci ratio: 1.853938e-01	ci left: 1.547963e-04	ci right 1.867836e-04	k: 446	n:2620000
Cons ci ratio: 4.172227e-03	ci left: 2.514896e-01	ci right 2.525415e-01	k: 660280	n:2620000
KS ci ratio: 3.386277e-01	ci left: 4.250327e-05	ci right 6.016004e-05	k: 133	n:2620000
LTBP4   2620000 perm   3124 sec   (839 perm/sec)   p_kst 5.076336e-05   p_cons 2.520153e-01   p_joint 1.702290e-04

Joint ci ratio: 1.849804e-01	ci left: 1.549329e-04	ci right 1.868691e-04	k: 448	n:2630000
Cons ci ratio: 4.164187e-03	ci left: 2.514997e-01	ci right 2.525495e-01	k: 662824	n:2630000
KS ci ratio: 3.386277e-01	ci left: 4.234166e-05	ci right 5.993129e-05	k: 133	n:2630000
LTBP4   2630000 perm   3146 sec   (836 perm/sec)   p_kst 5.057034e-05   p_cons 2.520243e-01   p_joint 1.703422e-04

Joint ci ratio: 1.847748e-01	ci left: 1.547073e-04	ci right 1.865576e-04	k: 449	n:2640000
Cons ci ratio: 4.156273e-03	ci left: 2.515025e-01	ci right 2.525503e-01	k: 665349	n:2640000
KS ci ratio: 3.386278e-01	ci left: 4.218127e-05	ci right 5.970428e-05	k: 133	n:2640000
LTBP4   2640000 perm   3167 sec   (833 perm/sec)   p_kst 5.037879e-05   p_cons 2.520261e-01   p_joint 1.700758e-04

Joint ci ratio: 1.849805e-01	ci left: 1.537636e-04	ci right 1.854588e-04	k: 448	n:2650000
Cons ci ratio: 4.148516e-03	ci left: 2.514951e-01	ci right 2.525409e-01	k: 667847	n:2650000
KS ci ratio: 3.386278e-01	ci left: 4.202210e-05	ci right 5.947898e-05	k: 133	n:2650000
LTBP4   2650000 perm   3188 sec   (831 perm/sec)   p_kst 5.018868e-05   p_cons 2.520177e-01   p_joint 1.690566e-04

Joint ci ratio: 1.843656e-01	ci left: 1.542612e-04	ci right 1.859415e-04	k: 451	n:2660000
Cons ci ratio: 4.140521e-03	ci left: 2.515133e-01	ci right 2.525572e-01	k: 670413	n:2660000
KS ci ratio: 3.386278e-01	ci left: 4.186412e-05	ci right 5.925538e-05	k: 133	n:2660000
LTBP4   2660000 perm   3210 sec   (829 perm/sec)   p_kst 5.000000e-05   p_cons 2.520350e-01   p_joint 1.695489e-04

Joint ci ratio: 1.789066e-01	ci left: 1.636937e-04	ci right 1.962080e-04	k: 479	n:2670000
Cons ci ratio: 4.236920e-03	ci left: 2.422525e-01	ci right 2.432814e-01	k: 648187	n:2670000
KS ci ratio: 3.386279e-01	ci left: 4.170732e-05	ci right 5.903345e-05	k: 133	n:2670000
LTBP4   2670000 perm   3231 sec   (826 perm/sec)   p_kst 4.981273e-05   p_cons 2.427667e-01   p_joint 1.794007e-04

Joint ci ratio: 1.789066e-01	ci left: 1.630829e-04	ci right 1.954759e-04	k: 479	n:2680000
Cons ci ratio: 4.229093e-03	ci left: 2.422461e-01	ci right 2.432731e-01	k: 650595	n:2680000
KS ci ratio: 3.373713e-01	ci left: 4.189317e-05	ci right 5.921786e-05	k: 134	n:2680000
LTBP4   2680000 perm   3252 sec   (824 perm/sec)   p_kst 5.000000e-05   p_cons 2.427593e-01   p_joint 1.787313e-04

Joint ci ratio: 1.792807e-01	ci left: 1.617665e-04	ci right 1.939725e-04	k: 477	n:2690000
Cons ci ratio: 4.221146e-03	ci left: 2.422539e-01	ci right 2.432790e-01	k: 653041	n:2690000
KS ci ratio: 3.361287e-01	ci left: 4.207775e-05	ci right 5.940078e-05	k: 135	n:2690000
LTBP4   2690000 perm   3273 sec   (822 perm/sec)   p_kst 5.018587e-05   p_cons 2.427662e-01   p_joint 1.773234e-04

Joint ci ratio: 1.789068e-01	ci left: 1.618749e-04	ci right 1.940280e-04	k: 479	n:2700000
Cons ci ratio: 4.213448e-03	ci left: 2.422439e-01	ci right 2.432671e-01	k: 655439	n:2700000
KS ci ratio: 3.361287e-01	ci left: 4.192190e-05	ci right 5.918078e-05	k: 135	n:2700000
LTBP4   2700000 perm   3295 sec   (819 perm/sec)   p_kst 5.000000e-05   p_cons 2.427552e-01   p_joint 1.774074e-04

Joint ci ratio: 1.787207e-01	ci left: 1.616301e-04	ci right 1.936975e-04	k: 480	n:2710000
Cons ci ratio: 4.205513e-03	ci left: 2.422583e-01	ci right 2.432796e-01	k: 657903	n:2710000
KS ci ratio: 3.361287e-01	ci left: 4.176721e-05	ci right 5.896240e-05	k: 135	n:2710000
LTBP4   2710000 perm   3316 sec   (817 perm/sec)   p_kst 4.981550e-05   p_cons 2.427686e-01   p_joint 1.771218e-04

Joint ci ratio: 1.781659e-01	ci left: 1.620895e-04	ci right 1.941375e-04	k: 483	n:2720000
Cons ci ratio: 4.197631e-03	ci left: 2.422718e-01	ci right 2.432913e-01	k: 660365	n:2720000
KS ci ratio: 3.361288e-01	ci left: 4.161365e-05	ci right 5.874563e-05	k: 135	n:2720000
LTBP4   2720000 perm   3338 sec   (815 perm/sec)   p_kst 4.963235e-05   p_cons 2.427813e-01   p_joint 1.775735e-04

Joint ci ratio: 1.779822e-01	ci left: 1.618458e-04	ci right 1.938090e-04	k: 484	n:2730000
Cons ci ratio: 4.189860e-03	ci left: 2.422794e-01	ci right 2.432970e-01	k: 662811	n:2730000
KS ci ratio: 3.361288e-01	ci left: 4.146122e-05	ci right 5.853044e-05	k: 135	n:2730000
LTBP4   2730000 perm   3360 sec   (813 perm/sec)   p_kst 4.945055e-05   p_cons 2.427879e-01   p_joint 1.772894e-04

Joint ci ratio: 1.777990e-01	ci left: 1.616038e-04	ci right 1.934829e-04	k: 485	n:2740000
Cons ci ratio: 4.182161e-03	ci left: 2.422844e-01	ci right 2.433001e-01	k: 665250	n:2740000
KS ci ratio: 3.361288e-01	ci left: 4.130990e-05	ci right 5.831683e-05	k: 135	n:2740000
LTBP4   2740000 perm   3381 sec   (810 perm/sec)   p_kst 4.927007e-05   p_cons 2.427920e-01   p_joint 1.770073e-04

Joint ci ratio: 1.777991e-01	ci left: 1.610161e-04	ci right 1.927793e-04	k: 485	n:2750000
Cons ci ratio: 4.174183e-03	ci left: 2.423177e-01	ci right 2.433316e-01	k: 667767	n:2750000
KS ci ratio: 3.361289e-01	ci left: 4.115968e-05	ci right 5.810477e-05	k: 135	n:2750000
LTBP4   2750000 perm   3403 sec   (808 perm/sec)   p_kst 4.909091e-05   p_cons 2.428244e-01   p_joint 1.763636e-04

Joint ci ratio: 1.776165e-01	ci left: 1.607790e-04	ci right 1.924592e-04	k: 486	n:2760000
Cons ci ratio: 4.166603e-03	ci left: 2.423196e-01	ci right 2.433317e-01	k: 670198	n:2760000
KS ci ratio: 3.361289e-01	ci left: 4.101055e-05	ci right 5.789425e-05	k: 135	n:2760000
LTBP4   2760000 perm   3426 sec   (806 perm/sec)   p_kst 4.891304e-05   p_cons 2.428254e-01   p_joint 1.760870e-04

Joint ci ratio: 1.776165e-01	ci left: 1.601985e-04	ci right 1.917644e-04	k: 486	n:2770000
Cons ci ratio: 4.159256e-03	ci left: 2.423045e-01	ci right 2.433148e-01	k: 672582	n:2770000
KS ci ratio: 3.361289e-01	ci left: 4.086250e-05	ci right 5.768524e-05	k: 135	n:2770000
LTBP4   2770000 perm   3448 sec   (803 perm/sec)   p_kst 4.873646e-05   p_cons 2.428094e-01   p_joint 1.754513e-04

Joint ci ratio: 1.772529e-01	ci left: 1.603097e-04	ci right 1.918260e-04	k: 488	n:2780000
Cons ci ratio: 4.151578e-03	ci left: 2.423223e-01	ci right 2.433308e-01	k: 675057	n:2780000
KS ci ratio: 3.361289e-01	ci left: 4.071551e-05	ci right 5.747774e-05	k: 135	n:2780000
LTBP4   2780000 perm   3470 sec   (801 perm/sec)   p_kst 4.856115e-05   p_cons 2.428263e-01   p_joint 1.755396e-04

Joint ci ratio: 1.772530e-01	ci left: 1.597352e-04	ci right 1.911384e-04	k: 488	n:2790000
Cons ci ratio: 4.144237e-03	ci left: 2.423138e-01	ci right 2.433204e-01	k: 677459	n:2790000
KS ci ratio: 3.361290e-01	ci left: 4.056958e-05	ci right 5.727173e-05	k: 135	n:2790000
LTBP4   2790000 perm   3493 sec   (799 perm/sec)   p_kst 4.838710e-05   p_cons 2.428168e-01   p_joint 1.749104e-04

Joint ci ratio: 1.767117e-01	ci left: 1.601886e-04	ci right 1.915746e-04	k: 491	n:2800000
Cons ci ratio: 4.136614e-03	ci left: 2.423339e-01	ci right 2.433388e-01	k: 679941	n:2800000
KS ci ratio: 3.336843e-01	ci left: 4.107892e-05	ci right 5.784132e-05	k: 137	n:2800000
LTBP4   2800000 perm   3515 sec   (797 perm/sec)   p_kst 4.892857e-05   p_cons 2.428361e-01   p_joint 1.753571e-04

Joint ci ratio: 1.759976e-01	ci left: 1.609792e-04	ci right 1.923791e-04	k: 495	n:2810000
Cons ci ratio: 4.129124e-03	ci left: 2.423457e-01	ci right 2.433488e-01	k: 682400	n:2810000
KS ci ratio: 3.301152e-01	ci left: 4.191139e-05	ci right 5.879173e-05	k: 140	n:2810000
LTBP4   2810000 perm   3537 sec   (794 perm/sec)   p_kst 4.982206e-05   p_cons 2.428470e-01   p_joint 1.761566e-04

Joint ci ratio: 1.752922e-01	ci left: 1.617645e-04	ci right 1.931777e-04	k: 499	n:2820000
Cons ci ratio: 4.121989e-03	ci left: 2.423294e-01	ci right 2.433307e-01	k: 684780	n:2820000
KS ci ratio: 3.289508e-01	ci left: 4.208805e-05	ci right 5.896709e-05	k: 141	n:2820000
LTBP4   2820000 perm   3559 sec   (792 perm/sec)   p_kst 5.000000e-05   p_cons 2.428298e-01   p_joint 1.769504e-04

Joint ci ratio: 1.751172e-01	ci left: 1.615307e-04	ci right 1.928639e-04	k: 500	n:2830000
Cons ci ratio: 4.115045e-03	ci left: 2.422995e-01	ci right 2.432989e-01	k: 687121	n:2830000
KS ci ratio: 3.277985e-01	ci left: 4.226356e-05	ci right 5.914110e-05	k: 142	n:2830000
LTBP4   2830000 perm   3581 sec   (790 perm/sec)   p_kst 5.017668e-05   p_cons 2.427989e-01   p_joint 1.766784e-04

Joint ci ratio: 1.749427e-01	ci left: 1.612986e-04	ci right 1.925523e-04	k: 501	n:2840000
Cons ci ratio: 4.107405e-03	ci left: 2.423352e-01	ci right 2.433329e-01	k: 689648	n:2840000
KS ci ratio: 3.277986e-01	ci left: 4.211474e-05	ci right 5.893286e-05	k: 142	n:2840000
LTBP4   2840000 perm   3604 sec   (788 perm/sec)   p_kst 5.000000e-05   p_cons 2.428338e-01   p_joint 1.764085e-04

Joint ci ratio: 1.781667e-01	ci left: 1.546959e-04	ci right 1.852822e-04	k: 483	n:2850000
Cons ci ratio: 4.100166e-03	ci left: 2.423384e-01	ci right 2.433344e-01	k: 692083	n:2850000
KS ci ratio: 3.277986e-01	ci left: 4.196697e-05	ci right 5.872608e-05	k: 142	n:2850000
LTBP4   2850000 perm   3626 sec   (786 perm/sec)   p_kst 4.982456e-05   p_cons 2.428361e-01   p_joint 1.694737e-04

Joint ci ratio: 1.777997e-01	ci left: 1.548232e-04	ci right 1.853648e-04	k: 485	n:2860000
Cons ci ratio: 4.093095e-03	ci left: 2.423301e-01	ci right 2.433243e-01	k: 694485	n:2860000
KS ci ratio: 3.266584e-01	ci left: 4.214116e-05	ci right 5.889902e-05	k: 143	n:2860000
LTBP4   2860000 perm   3649 sec   (784 perm/sec)   p_kst 5.000000e-05   p_cons 2.428269e-01   p_joint 1.695804e-04

Joint ci ratio: 1.776171e-01	ci left: 1.546167e-04	ci right 1.850828e-04	k: 486	n:2870000
Cons ci ratio: 4.085645e-03	ci left: 2.423590e-01	ci right 2.433516e-01	k: 696994	n:2870000
KS ci ratio: 3.255300e-01	ci left: 4.231424e-05	ci right 5.907065e-05	k: 144	n:2870000
LTBP4   2870000 perm   3672 sec   (782 perm/sec)   p_kst 5.017422e-05   p_cons 2.428551e-01   p_joint 1.693380e-04

Joint ci ratio: 1.770725e-01	ci left: 1.550752e-04	ci right 1.855280e-04	k: 489	n:2880000
Cons ci ratio: 4.078509e-03	ci left: 2.423632e-01	ci right 2.433540e-01	k: 699432	n:2880000
KS ci ratio: 3.244132e-01	ci left: 4.248622e-05	ci right 5.924099e-05	k: 145	n:2880000
LTBP4   2880000 perm   3695 sec   (779 perm/sec)   p_kst 5.034722e-05   p_cons 2.428583e-01   p_joint 1.697917e-04

Joint ci ratio: 1.770725e-01	ci left: 1.545386e-04	ci right 1.848861e-04	k: 489	n:2890000
Cons ci ratio: 4.071633e-03	ci left: 2.423472e-01	ci right 2.433363e-01	k: 701812	n:2890000
KS ci ratio: 3.244133e-01	ci left: 4.233921e-05	ci right 5.903600e-05	k: 145	n:2890000
LTBP4   2890000 perm   3718 sec   (777 perm/sec)   p_kst 5.017301e-05   p_cons 2.428415e-01   p_joint 1.692042e-04

Joint ci ratio: 1.754682e-01	ci left: 1.569723e-04	ci right 1.874887e-04	k: 498	n:2900000
Cons ci ratio: 4.064563e-03	ci left: 2.423521e-01	ci right 2.433395e-01	k: 704252	n:2900000
KS ci ratio: 3.211306e-01	ci left: 4.314389e-05	ci right 5.995043e-05	k: 148	n:2900000
LTBP4   2900000 perm   3741 sec   (775 perm/sec)   p_kst 5.103448e-05   p_cons 2.428455e-01   p_joint 1.717241e-04

Joint ci ratio: 1.749430e-01	ci left: 1.574186e-04	ci right 1.879205e-04	k: 501	n:2910000
Cons ci ratio: 4.057696e-03	ci left: 2.423418e-01	ci right 2.433275e-01	k: 706648	n:2910000
KS ci ratio: 3.189967e-01	ci left: 4.362771e-05	ci right 6.048673e-05	k: 150	n:2910000
LTBP4   2910000 perm   3764 sec   (773 perm/sec)   p_kst 5.154639e-05   p_cons 2.428344e-01   p_joint 1.721649e-04

Joint ci ratio: 1.747691e-01	ci left: 1.572070e-04	ci right 1.876344e-04	k: 502	n:2920000
Cons ci ratio: 4.050706e-03	ci left: 2.423459e-01	ci right 2.433299e-01	k: 709086	n:2920000
KS ci ratio: 3.189968e-01	ci left: 4.347830e-05	ci right 6.027958e-05	k: 150	n:2920000
LTBP4   2920000 perm   3788 sec   (771 perm/sec)   p_kst 5.136986e-05   p_cons 2.428377e-01   p_joint 1.719178e-04

Joint ci ratio: 1.744226e-01	ci left: 1.573232e-04	ci right 1.877064e-04	k: 504	n:2930000
Cons ci ratio: 4.043774e-03	ci left: 2.423480e-01	ci right 2.433303e-01	k: 711518	n:2930000
KS ci ratio: 3.189968e-01	ci left: 4.332991e-05	ci right 6.007385e-05	k: 150	n:2930000
LTBP4   2930000 perm   3812 sec   (769 perm/sec)   p_kst 5.119454e-05   p_cons 2.428389e-01   p_joint 1.720137e-04

Joint ci ratio: 1.742502e-01	ci left: 1.571134e-04	ci right 1.874229e-04	k: 505	n:2940000
Cons ci ratio: 4.036997e-03	ci left: 2.423392e-01	ci right 2.433198e-01	k: 713918	n:2940000
KS ci ratio: 3.189968e-01	ci left: 4.318253e-05	ci right 5.986952e-05	k: 150	n:2940000
LTBP4   2940000 perm   3835 sec   (767 perm/sec)   p_kst 5.102041e-05   p_cons 2.428293e-01   p_joint 1.717687e-04

Joint ci ratio: 1.735655e-01	ci left: 1.578777e-04	ci right 1.882025e-04	k: 509	n:2950000
Cons ci ratio: 4.030380e-03	ci left: 2.423189e-01	ci right 2.432979e-01	k: 716284	n:2950000
KS ci ratio: 3.169049e-01	ci left: 4.366002e-05	ci right 6.039846e-05	k: 152	n:2950000
LTBP4   2950000 perm   3859 sec   (765 perm/sec)   p_kst 5.152542e-05   p_cons 2.428081e-01   p_joint 1.725424e-04

Joint ci ratio: 1.728887e-01	ci left: 1.586371e-04	ci right 1.889765e-04	k: 513	n:2960000
Cons ci ratio: 4.023548e-03	ci left: 2.423214e-01	ci right 2.432987e-01	k: 718717	n:2960000
KS ci ratio: 3.169050e-01	ci left: 4.351252e-05	ci right 6.019441e-05	k: 152	n:2960000
LTBP4   2960000 perm   3882 sec   (762 perm/sec)   p_kst 5.135135e-05   p_cons 2.428098e-01   p_joint 1.733108e-04

Joint ci ratio: 1.722199e-01	ci left: 1.593916e-04	ci right 1.897451e-04	k: 517	n:2970000
Cons ci ratio: 4.016968e-03	ci left: 2.423040e-01	ci right 2.432796e-01	k: 721091	n:2970000
KS ci ratio: 3.158744e-01	ci left: 4.367598e-05	ci right 6.035508e-05	k: 153	n:2970000
LTBP4   2970000 perm   3905 sec   (760 perm/sec)   p_kst 5.151515e-05   p_cons 2.427916e-01   p_joint 1.740741e-04

Joint ci ratio: 1.720539e-01	ci left: 1.591778e-04	ci right 1.894584e-04	k: 518	n:2980000
Cons ci ratio: 4.009966e-03	ci left: 2.423284e-01	ci right 2.433023e-01	k: 723589	n:2980000
KS ci ratio: 3.158744e-01	ci left: 4.352942e-05	ci right 6.015255e-05	k: 153	n:2980000
LTBP4   2980000 perm   3929 sec   (759 perm/sec)   p_kst 5.134228e-05   p_cons 2.428151e-01   p_joint 1.738255e-04

Joint ci ratio: 1.713946e-01	ci left: 1.599258e-04	ci right 1.902200e-04	k: 522	n:2990000
Cons ci ratio: 4.003146e-03	ci left: 2.423391e-01	ci right 2.433115e-01	k: 726047	n:2990000
KS ci ratio: 3.128418e-01	ci left: 4.430803e-05	ci right 6.103361e-05	k: 156	n:2990000
LTBP4   2990000 perm   3953 sec   (756 perm/sec)   p_kst 5.217391e-05   p_cons 2.428251e-01   p_joint 1.745819e-04

Joint ci ratio: 1.712310e-01	ci left: 1.597117e-04	ci right 1.899336e-04	k: 523	n:3000000
Cons ci ratio: 3.996748e-03	ci left: 2.423142e-01	ci right 2.432849e-01	k: 728398	n:3000000
KS ci ratio: 3.118502e-01	ci left: 4.446755e-05	ci right 6.118954e-05	k: 157	n:3000000
LTBP4   3000000 perm   3976 sec   (754 perm/sec)   p_kst 5.233333e-05   p_cons 2.427993e-01   p_joint 1.743333e-04

Joint ci ratio: 1.705811e-01	ci left: 1.604532e-04	ci right 1.906882e-04	k: 527	n:3010000
Cons ci ratio: 3.990165e-03	ci left: 2.423094e-01	ci right 2.432785e-01	k: 730809	n:3010000
KS ci ratio: 3.098949e-01	ci left: 4.493244e-05	ci right 6.170237e-05	k: 159	n:3010000
LTBP4   3010000 perm   4000 sec   (753 perm/sec)   p_kst 5.282392e-05   p_cons 2.427937e-01   p_joint 1.750831e-04

Joint ci ratio: 1.702589e-01	ci left: 1.605559e-04	ci right 1.907473e-04	k: 529	n:3020000
Cons ci ratio: 3.983377e-03	ci left: 2.423264e-01	ci right 2.432939e-01	k: 733286	n:3020000
KS ci ratio: 3.098949e-01	ci left: 4.478366e-05	ci right 6.149806e-05	k: 159	n:3020000
LTBP4   3020000 perm   4023 sec   (751 perm/sec)   p_kst 5.264901e-05   p_cons 2.428099e-01   p_joint 1.751656e-04

Joint ci ratio: 1.700986e-01	ci left: 1.603420e-04	ci right 1.904618e-04	k: 530	n:3030000
Cons ci ratio: 3.976891e-03	ci left: 2.423186e-01	ci right 2.432845e-01	k: 735688	n:3030000
KS ci ratio: 3.098950e-01	ci left: 4.463586e-05	ci right 6.129509e-05	k: 159	n:3030000
LTBP4   3030000 perm   4047 sec   (749 perm/sec)   p_kst 5.247525e-05   p_cons 2.428013e-01   p_joint 1.749175e-04

Joint ci ratio: 1.697791e-01	ci left: 1.604445e-04	ci right 1.905212e-04	k: 532	n:3040000
Cons ci ratio: 3.970352e-03	ci left: 2.423187e-01	ci right 2.432831e-01	k: 738114	n:3040000
KS ci ratio: 3.089310e-01	ci left: 4.479244e-05	ci right 6.144787e-05	k: 160	n:3040000
LTBP4   3040000 perm   4071 sec   (747 perm/sec)   p_kst 5.263158e-05   p_cons 2.428007e-01   p_joint 1.750000e-04

Joint ci ratio: 1.696201e-01	ci left: 1.602323e-04	ci right 1.902383e-04	k: 533	n:3050000
Cons ci ratio: 3.963750e-03	ci left: 2.423277e-01	ci right 2.432905e-01	k: 740567	n:3050000
KS ci ratio: 3.079761e-01	ci left: 4.494807e-05	ci right 6.159957e-05	k: 161	n:3050000
LTBP4   3050000 perm   4095 sec   (745 perm/sec)   p_kst 5.278689e-05   p_cons 2.428089e-01   p_joint 1.747541e-04

Joint ci ratio: 1.693034e-01	ci left: 1.603346e-04	ci right 1.902979e-04	k: 535	n:3060000
Cons ci ratio: 3.957423e-03	ci left: 2.423141e-01	ci right 2.432753e-01	k: 742951	n:3060000
KS ci ratio: 3.079761e-01	ci left: 4.480118e-05	ci right 6.139826e-05	k: 161	n:3060000
LTBP4   3060000 perm   4120 sec   (743 perm/sec)   p_kst 5.261438e-05   p_cons 2.427944e-01   p_joint 1.748366e-04

Joint ci ratio: 1.691457e-01	ci left: 1.601243e-04	ci right 1.900175e-04	k: 536	n:3070000
Cons ci ratio: 3.951095e-03	ci left: 2.423035e-01	ci right 2.432631e-01	k: 745344	n:3070000
KS ci ratio: 3.070299e-01	ci left: 4.495585e-05	ci right 6.154905e-05	k: 162	n:3070000
LTBP4   3070000 perm   4144 sec   (741 perm/sec)   p_kst 5.276873e-05   p_cons 2.427831e-01   p_joint 1.745928e-04

Joint ci ratio: 1.689884e-01	ci left: 1.599153e-04	ci right 1.897390e-04	k: 537	n:3080000
Cons ci ratio: 3.944588e-03	ci left: 2.423125e-01	ci right 2.432705e-01	k: 747797	n:3080000
KS ci ratio: 3.070299e-01	ci left: 4.480989e-05	ci right 6.134922e-05	k: 162	n:3080000
LTBP4   3080000 perm   4168 sec   (739 perm/sec)   p_kst 5.259740e-05   p_cons 2.427912e-01   p_joint 1.743506e-04

Joint ci ratio: 1.683636e-01	ci left: 1.606376e-04	ci right 1.904741e-04	k: 541	n:3090000
Cons ci ratio: 3.938199e-03	ci left: 2.423133e-01	ci right 2.432697e-01	k: 750225	n:3090000
KS ci ratio: 3.070299e-01	ci left: 4.466488e-05	ci right 6.115068e-05	k: 162	n:3090000
LTBP4   3090000 perm   4193 sec   (737 perm/sec)   p_kst 5.242718e-05   p_cons 2.427913e-01   p_joint 1.750809e-04

Joint ci ratio: 1.677457e-01	ci left: 1.613555e-04	ci right 1.912042e-04	k: 545	n:3100000
Cons ci ratio: 3.931801e-03	ci left: 2.423179e-01	ci right 2.432729e-01	k: 752665	n:3100000
KS ci ratio: 3.051634e-01	ci left: 4.511641e-05	ci right 6.164798e-05	k: 164	n:3100000
LTBP4   3100000 perm   4217 sec   (735 perm/sec)   p_kst 5.290323e-05   p_cons 2.427952e-01   p_joint 1.758065e-04

Joint ci ratio: 1.677458e-01	ci left: 1.608367e-04	ci right 1.905894e-04	k: 545	n:3110000
Cons ci ratio: 3.925701e-03	ci left: 2.422975e-01	ci right 2.432509e-01	k: 755027	n:3110000
KS ci ratio: 3.051634e-01	ci left: 4.497134e-05	ci right 6.144975e-05	k: 164	n:3110000
LTBP4   3110000 perm   4241 sec   (733 perm/sec)   p_kst 5.273312e-05   p_cons 2.427740e-01   p_joint 1.752412e-04

Joint ci ratio: 1.671346e-01	ci left: 1.615495e-04	ci right 1.913142e-04	k: 549	n:3120000
Cons ci ratio: 3.919636e-03	ci left: 2.422766e-01	ci right 2.432284e-01	k: 757387	n:3120000
KS ci ratio: 3.051635e-01	ci left: 4.482721e-05	ci right 6.125280e-05	k: 164	n:3120000
LTBP4   3120000 perm   4266 sec   (731 perm/sec)   p_kst 5.256410e-05   p_cons 2.427522e-01   p_joint 1.759615e-04

Joint ci ratio: 1.671346e-01	ci left: 1.610334e-04	ci right 1.907030e-04	k: 549	n:3130000
Cons ci ratio: 3.913280e-03	ci left: 2.422858e-01	ci right 2.432361e-01	k: 759841	n:3130000
KS ci ratio: 3.051635e-01	ci left: 4.468399e-05	ci right 6.105710e-05	k: 164	n:3130000
LTBP4   3130000 perm   4290 sec   (730 perm/sec)   p_kst 5.239617e-05   p_cons 2.427607e-01   p_joint 1.753994e-04

Joint ci ratio: 1.668316e-01	ci left: 1.611309e-04	ci right 1.907592e-04	k: 551	n:3140000
Cons ci ratio: 3.907076e-03	ci left: 2.422835e-01	ci right 2.432323e-01	k: 762259	n:3140000
KS ci ratio: 3.051635e-01	ci left: 4.454168e-05	ci right 6.086265e-05	k: 164	n:3140000
LTBP4   3140000 perm   4315 sec   (728 perm/sec)   p_kst 5.222930e-05   p_cons 2.427576e-01   p_joint 1.754777e-04

Joint ci ratio: 1.665302e-01	ci left: 1.612278e-04	ci right 1.908150e-04	k: 553	n:3150000
Cons ci ratio: 3.900996e-03	ci left: 2.422723e-01	ci right 2.432196e-01	k: 764649	n:3150000
KS ci ratio: 3.051635e-01	ci left: 4.440028e-05	ci right 6.066944e-05	k: 164	n:3150000
LTBP4   3150000 perm   4340 sec   (726 perm/sec)   p_kst 5.206349e-05   p_cons 2.427457e-01   p_joint 1.755556e-04

Joint ci ratio: 1.662304e-01	ci left: 1.613241e-04	ci right 1.908704e-04	k: 555	n:3160000
Cons ci ratio: 3.894927e-03	ci left: 2.422628e-01	ci right 2.432085e-01	k: 767044	n:3160000
KS ci ratio: 3.051636e-01	ci left: 4.425977e-05	ci right 6.047745e-05	k: 164	n:3160000
LTBP4   3160000 perm   4365 sec   (724 perm/sec)   p_kst 5.189873e-05   p_cons 2.427354e-01   p_joint 1.756329e-04

Joint ci ratio: 1.662304e-01	ci left: 1.608152e-04	ci right 1.902683e-04	k: 555	n:3170000
Cons ci ratio: 3.888827e-03	ci left: 2.422590e-01	ci right 2.432033e-01	k: 769457	n:3170000
KS ci ratio: 3.051636e-01	ci left: 4.412015e-05	ci right 6.028667e-05	k: 164	n:3170000
LTBP4   3170000 perm   4390 sec   (722 perm/sec)   p_kst 5.173502e-05   p_cons 2.427309e-01   p_joint 1.750789e-04

Joint ci ratio: 1.660812e-01	ci left: 1.606109e-04	ci right 1.899975e-04	k: 556	n:3180000
Cons ci ratio: 3.882728e-03	ci left: 2.422578e-01	ci right 2.432005e-01	k: 771878	n:3180000
KS ci ratio: 3.042430e-01	ci left: 4.427183e-05	ci right 6.043552e-05	k: 165	n:3180000
LTBP4   3180000 perm   4415 sec   (720 perm/sec)   p_kst 5.188679e-05   p_cons 2.427289e-01   p_joint 1.748428e-04

Joint ci ratio: 1.665304e-01	ci left: 1.592061e-04	ci right 1.884223e-04	k: 553	n:3190000
Cons ci ratio: 3.876669e-03	ci left: 2.422556e-01	ci right 2.431969e-01	k: 774296	n:3190000
KS ci ratio: 3.042430e-01	ci left: 4.413305e-05	ci right 6.024607e-05	k: 165	n:3190000
LTBP4   3190000 perm   4440 sec   (718 perm/sec)   p_kst 5.172414e-05   p_cons 2.427260e-01   p_joint 1.733542e-04

Joint ci ratio: 1.663803e-01	ci left: 1.590081e-04	ci right 1.881590e-04	k: 554	n:3200000
Cons ci ratio: 3.870877e-03	ci left: 2.422307e-01	ci right 2.431704e-01	k: 776641	n:3200000
KS ci ratio: 3.042431e-01	ci left: 4.399513e-05	ci right 6.005780e-05	k: 165	n:3200000
LTBP4   3200000 perm   4466 sec   (717 perm/sec)   p_kst 5.156250e-05   p_cons 2.427003e-01   p_joint 1.731250e-04

Joint ci ratio: 1.669833e-01	ci left: 1.573186e-04	ci right 1.862748e-04	k: 550	n:3210000
Cons ci ratio: 3.864928e-03	ci left: 2.422233e-01	ci right 2.431616e-01	k: 779042	n:3210000
KS ci ratio: 3.042431e-01	ci left: 4.385808e-05	ci right 5.987071e-05	k: 165	n:3210000
LTBP4   3210000 perm   4491 sec   (715 perm/sec)   p_kst 5.140187e-05   p_cons 2.426922e-01   p_joint 1.713396e-04

Joint ci ratio: 1.668320e-01	ci left: 1.571276e-04	ci right 1.860199e-04	k: 551	n:3220000
Cons ci ratio: 3.858916e-03	ci left: 2.422247e-01	ci right 2.431615e-01	k: 781471	n:3220000
KS ci ratio: 3.033308e-01	ci left: 4.400876e-05	ci right 6.001893e-05	k: 166	n:3220000
LTBP4   3220000 perm   4516 sec   (713 perm/sec)   p_kst 5.155280e-05   p_cons 2.426929e-01   p_joint 1.711180e-04

Joint ci ratio: 1.668320e-01	ci left: 1.566411e-04	ci right 1.854440e-04	k: 551	n:3230000
Cons ci ratio: 3.852872e-03	ci left: 2.422316e-01	ci right 2.431670e-01	k: 783918	n:3230000
KS ci ratio: 3.033308e-01	ci left: 4.387251e-05	ci right 5.983311e-05	k: 166	n:3230000
LTBP4   3230000 perm   4541 sec   (711 perm/sec)   p_kst 5.139319e-05   p_cons 2.426991e-01   p_joint 1.705882e-04

Joint ci ratio: 1.663805e-01	ci left: 1.570450e-04	ci right 1.858361e-04	k: 554	n:3240000
Cons ci ratio: 3.846967e-03	ci left: 2.422280e-01	ci right 2.431619e-01	k: 786331	n:3240000
KS ci ratio: 3.033308e-01	ci left: 4.373710e-05	ci right 5.964844e-05	k: 166	n:3240000
LTBP4   3240000 perm   4567 sec   (709 perm/sec)   p_kst 5.123457e-05   p_cons 2.426948e-01   p_joint 1.709877e-04

Joint ci ratio: 1.668321e-01	ci left: 1.556772e-04	ci right 1.843028e-04	k: 551	n:3250000
Cons ci ratio: 3.840964e-03	ci left: 2.422364e-01	ci right 2.431689e-01	k: 788783	n:3250000
KS ci ratio: 3.033309e-01	ci left: 4.360253e-05	ci right 5.946491e-05	k: 166	n:3250000
LTBP4   3250000 perm   4592 sec   (708 perm/sec)   p_kst 5.107692e-05   p_cons 2.427025e-01   p_joint 1.695385e-04

Joint ci ratio: 1.665307e-01	ci left: 1.557875e-04	ci right 1.843765e-04	k: 553	n:3260000
Cons ci ratio: 3.835062e-03	ci left: 2.422378e-01	ci right 2.431688e-01	k: 791212	n:3260000
KS ci ratio: 3.024267e-01	ci left: 4.375222e-05	ci right 5.961249e-05	k: 167	n:3260000
LTBP4   3260000 perm   4618 sec   (706 perm/sec)   p_kst 5.122699e-05   p_cons 2.427031e-01   p_joint 1.696319e-04

Joint ci ratio: 1.660816e-01	ci left: 1.561904e-04	ci right 1.847682e-04	k: 556	n:3270000
Cons ci ratio: 3.828910e-03	ci left: 2.422657e-01	ci right 2.431953e-01	k: 793728	n:3270000
KS ci ratio: 3.015306e-01	ci left: 4.390106e-05	ci right 5.975910e-05	k: 168	n:3270000
LTBP4   3270000 perm   4643 sec   (704 perm/sec)   p_kst 5.137615e-05   p_cons 2.427303e-01   p_joint 1.700306e-04

Joint ci ratio: 1.659327e-01	ci left: 1.560064e-04	ci right 1.845224e-04	k: 557	n:3280000
Cons ci ratio: 3.823038e-03	ci left: 2.422693e-01	ci right 2.431976e-01	k: 796165	n:3280000
KS ci ratio: 3.015306e-01	ci left: 4.376722e-05	ci right 5.957691e-05	k: 168	n:3280000
LTBP4   3280000 perm   4669 sec   (703 perm/sec)   p_kst 5.121951e-05   p_cons 2.427332e-01   p_joint 1.698171e-04

Joint ci ratio: 1.654884e-01	ci left: 1.564062e-04	ci right 1.849112e-04	k: 560	n:3290000
Cons ci ratio: 3.817335e-03	ci left: 2.422593e-01	ci right 2.431861e-01	k: 798557	n:3290000
KS ci ratio: 3.006425e-01	ci left: 4.391518e-05	ci right 5.972266e-05	k: 169	n:3290000
LTBP4   3290000 perm   4695 sec   (701 perm/sec)   p_kst 5.136778e-05   p_cons 2.427225e-01   p_joint 1.702128e-04

Joint ci ratio: 1.654884e-01	ci left: 1.559323e-04	ci right 1.843509e-04	k: 560	n:3300000
Cons ci ratio: 3.811708e-03	ci left: 2.422445e-01	ci right 2.431699e-01	k: 800933	n:3300000
KS ci ratio: 3.006425e-01	ci left: 4.378210e-05	ci right 5.954169e-05	k: 169	n:3300000
LTBP4   3300000 perm   4721 sec   (699 perm/sec)   p_kst 5.121212e-05   p_cons 2.427070e-01   p_joint 1.696970e-04

Joint ci ratio: 1.654885e-01	ci left: 1.554612e-04	ci right 1.837939e-04	k: 560	n:3310000
Cons ci ratio: 3.806036e-03	ci left: 2.422364e-01	ci right 2.431604e-01	k: 803331	n:3310000
KS ci ratio: 3.006425e-01	ci left: 4.364983e-05	ci right 5.936180e-05	k: 169	n:3310000
LTBP4   3310000 perm   4747 sec   (697 perm/sec)   p_kst 5.105740e-05   p_cons 2.426982e-01   p_joint 1.691843e-04

Joint ci ratio: 1.651943e-01	ci left: 1.555704e-04	ci right 1.838677e-04	k: 562	n:3320000
Cons ci ratio: 3.800206e-03	ci left: 2.422461e-01	ci right 2.431688e-01	k: 805788	n:3320000
KS ci ratio: 2.997621e-01	ci left: 4.379688e-05	ci right 5.950682e-05	k: 170	n:3320000
LTBP4   3320000 perm   4774 sec   (696 perm/sec)   p_kst 5.120482e-05   p_cons 2.427072e-01   p_joint 1.692771e-04

Joint ci ratio: 1.650478e-01	ci left: 1.553911e-04	ci right 1.836282e-04	k: 563	n:3330000
Cons ci ratio: 3.794562e-03	ci left: 2.422405e-01	ci right 2.431617e-01	k: 808194	n:3330000
KS ci ratio: 2.988894e-01	ci left: 4.394311e-05	ci right 5.965091e-05	k: 171	n:3330000
LTBP4   3330000 perm   4800 sec   (694 perm/sec)   p_kst 5.135135e-05   p_cons 2.427009e-01   p_joint 1.690691e-04

Joint ci ratio: 1.647559e-01	ci left: 1.555000e-04	ci right 1.837019e-04	k: 565	n:3340000
Cons ci ratio: 3.788982e-03	ci left: 2.422310e-01	ci right 2.431509e-01	k: 810587	n:3340000
KS ci ratio: 2.988895e-01	ci left: 4.381154e-05	ci right 5.947231e-05	k: 171	n:3340000
LTBP4   3340000 perm   4828 sec   (692 perm/sec)   p_kst 5.119760e-05   p_cons 2.426907e-01   p_joint 1.691617e-04

Joint ci ratio: 1.647559e-01	ci left: 1.550358e-04	ci right 1.831535e-04	k: 565	n:3350000
Cons ci ratio: 3.783165e-03	ci left: 2.422470e-01	ci right 2.431654e-01	k: 813065	n:3350000
KS ci ratio: 2.988895e-01	ci left: 4.368076e-05	ci right 5.929478e-05	k: 171	n:3350000
LTBP4   3350000 perm   4854 sec   (690 perm/sec)   p_kst 5.104478e-05   p_cons 2.427060e-01   p_joint 1.686567e-04

Joint ci ratio: 1.650479e-01	ci left: 1.540037e-04	ci right 1.819887e-04	k: 563	n:3360000
Cons ci ratio: 3.777434e-03	ci left: 2.422571e-01	ci right 2.431743e-01	k: 815524	n:3360000
KS ci ratio: 2.980244e-01	ci left: 4.382610e-05	ci right 5.943815e-05	k: 172	n:3360000
LTBP4   3360000 perm   4881 sec   (688 perm/sec)   p_kst 5.119048e-05   p_cons 2.427155e-01   p_joint 1.675595e-04

Joint ci ratio: 1.650479e-01	ci left: 1.535467e-04	ci right 1.814487e-04	k: 563	n:3370000
Cons ci ratio: 3.772008e-03	ci left: 2.422400e-01	ci right 2.431557e-01	k: 817891	n:3370000
KS ci ratio: 2.980244e-01	ci left: 4.369605e-05	ci right 5.926177e-05	k: 172	n:3370000
LTBP4   3370000 perm   4908 sec   (687 perm/sec)   p_kst 5.103858e-05   p_cons 2.426976e-01   p_joint 1.670623e-04

Joint ci ratio: 1.649018e-01	ci left: 1.533761e-04	ci right 1.812199e-04	k: 564	n:3380000
Cons ci ratio: 3.766482e-03	ci left: 2.422350e-01	ci right 2.431494e-01	k: 820299	n:3380000
KS ci ratio: 2.963164e-01	ci left: 4.411438e-05	ci right 5.972214e-05	k: 174	n:3380000
LTBP4   3380000 perm   4935 sec   (685 perm/sec)   p_kst 5.147929e-05   p_cons 2.426920e-01   p_joint 1.668639e-04

Joint ci ratio: 1.647561e-01	ci left: 1.532065e-04	ci right 1.809925e-04	k: 565	n:3390000
Cons ci ratio: 3.761067e-03	ci left: 2.422216e-01	ci right 2.431346e-01	k: 822678	n:3390000
KS ci ratio: 2.954734e-01	ci left: 4.425734e-05	ci right 5.986279e-05	k: 175	n:3390000
LTBP4   3390000 perm   4962 sec   (683 perm/sec)   p_kst 5.162242e-05   p_cons 2.426779e-01   p_joint 1.666667e-04

Joint ci ratio: 1.653415e-01	ci left: 1.516280e-04	ci right 1.792351e-04	k: 561	n:3400000
Cons ci ratio: 3.755531e-03	ci left: 2.422223e-01	ci right 2.431340e-01	k: 825105	n:3400000
KS ci ratio: 2.954734e-01	ci left: 4.412717e-05	ci right 5.968672e-05	k: 175	n:3400000
LTBP4   3400000 perm   4989 sec   (681 perm/sec)   p_kst 5.147059e-05   p_cons 2.426779e-01   p_joint 1.650000e-04

Joint ci ratio: 1.649020e-01	ci left: 1.520267e-04	ci right 1.796256e-04	k: 564	n:3410000
Cons ci ratio: 3.749888e-03	ci left: 2.422360e-01	ci right 2.431463e-01	k: 827576	n:3410000
KS ci ratio: 2.946376e-01	ci left: 4.426932e-05	ci right 5.982658e-05	k: 176	n:3410000
LTBP4   3410000 perm   5017 sec   (680 perm/sec)   p_kst 5.161290e-05   p_cons 2.426909e-01   p_joint 1.653959e-04

Joint ci ratio: 1.649020e-01	ci left: 1.515822e-04	ci right 1.791004e-04	k: 564	n:3420000
Cons ci ratio: 3.744336e-03	ci left: 2.422431e-01	ci right 2.431521e-01	k: 830025	n:3420000
KS ci ratio: 2.946376e-01	ci left: 4.413988e-05	ci right 5.965165e-05	k: 176	n:3420000
LTBP4   3420000 perm   5043 sec   (678 perm/sec)   p_kst 5.146199e-05   p_cons 2.426974e-01   p_joint 1.649123e-04

Joint ci ratio: 1.265657e-01	ci left: 2.618940e-04	ci right 2.975591e-04	k: 958	n:3430000
Cons ci ratio: 3.738913e-03	ci left: 2.422400e-01	ci right 2.431476e-01	k: 832439	n:3430000
KS ci ratio: 2.938088e-01	ci left: 4.428122e-05	ci right 5.979074e-05	k: 177	n:3430000
LTBP4   3430000 perm   5070 sec   (676 perm/sec)   p_kst 5.160350e-05   p_cons 2.426936e-01   p_joint 2.793003e-04

Joint ci ratio: 1.270303e-01	ci left: 2.591623e-04	ci right 2.945948e-04	k: 951	n:3440000
Cons ci ratio: 3.733577e-03	ci left: 2.422305e-01	ci right 2.431368e-01	k: 834831	n:3440000
KS ci ratio: 2.929869e-01	ci left: 4.442180e-05	ci right 5.992896e-05	k: 178	n:3440000
LTBP4   3440000 perm   5097 sec   (675 perm/sec)   p_kst 5.174419e-05   p_cons 2.426834e-01   p_joint 2.764535e-04

Joint ci ratio: 1.268971e-01	ci left: 2.589724e-04	ci right 2.943390e-04	k: 953	n:3450000
Cons ci ratio: 3.728206e-03	ci left: 2.422268e-01	ci right 2.431319e-01	k: 837243	n:3450000
KS ci ratio: 2.929869e-01	ci left: 4.429304e-05	ci right 5.975525e-05	k: 178	n:3450000
LTBP4   3450000 perm   5125 sec   (673 perm/sec)   p_kst 5.159420e-05   p_cons 2.426791e-01   p_joint 2.762319e-04

Joint ci ratio: 1.265658e-01	ci left: 2.596232e-04	ci right 2.949792e-04	k: 958	n:3460000
Cons ci ratio: 3.722799e-03	ci left: 2.422290e-01	ci right 2.431327e-01	k: 839675	n:3460000
KS ci ratio: 2.913636e-01	ci left: 4.470071e-05	ci right 6.020283e-05	k: 180	n:3460000
LTBP4   3460000 perm   5152 sec   (672 perm/sec)   p_kst 5.202312e-05   p_cons 2.426806e-01   p_joint 2.768786e-04

Joint ci ratio: 1.264999e-01	ci left: 2.591541e-04	ci right 2.944264e-04	k: 959	n:3470000
Cons ci ratio: 3.717209e-03	ci left: 2.422516e-01	ci right 2.431540e-01	k: 842178	n:3470000
KS ci ratio: 2.913637e-01	ci left: 4.457189e-05	ci right 6.002933e-05	k: 180	n:3470000
LTBP4   3470000 perm   5180 sec   (670 perm/sec)   p_kst 5.187320e-05   p_cons 2.427026e-01   p_joint 2.763689e-04

Joint ci ratio: 1.264341e-01	ci left: 2.586876e-04	ci right 2.938768e-04	k: 960	n:3480000
Cons ci ratio: 3.712001e-03	ci left: 2.422387e-01	ci right 2.431399e-01	k: 844558	n:3480000
KS ci ratio: 2.913637e-01	ci left: 4.444381e-05	ci right 5.985683e-05	k: 180	n:3480000
LTBP4   3480000 perm   5207 sec   (668 perm/sec)   p_kst 5.172414e-05   p_cons 2.426891e-01   p_joint 2.758621e-04

Joint ci ratio: 1.261718e-01	ci left: 2.590563e-04	ci right 2.942171e-04	k: 964	n:3490000
Cons ci ratio: 3.706601e-03	ci left: 2.422471e-01	ci right 2.431470e-01	k: 847012	n:3490000
KS ci ratio: 2.913637e-01	ci left: 4.431646e-05	ci right 5.968532e-05	k: 180	n:3490000
LTBP4   3490000 perm   5234 sec   (667 perm/sec)   p_kst 5.157593e-05   p_cons 2.426968e-01   p_joint 2.762178e-04

Joint ci ratio: 1.279072e-01	ci left: 2.511236e-04	ci right 2.857120e-04	k: 938	n:3500000
Cons ci ratio: 3.701356e-03	ci left: 2.422424e-01	ci right 2.431409e-01	k: 849420	n:3500000
KS ci ratio: 2.905621e-01	ci left: 4.445471e-05	ci right 5.982130e-05	k: 181	n:3500000
LTBP4   3500000 perm   5261 sec   (665 perm/sec)   p_kst 5.171429e-05   p_cons 2.426914e-01   p_joint 2.680000e-04

Joint ci ratio: 1.277033e-01	ci left: 2.512355e-04	ci right 2.857800e-04	k: 941	n:3510000
Cons ci ratio: 3.695882e-03	ci left: 2.422627e-01	ci right 2.431600e-01	k: 851916	n:3510000
KS ci ratio: 2.905622e-01	ci left: 4.432805e-05	ci right 5.965087e-05	k: 181	n:3510000
LTBP4   3510000 perm   5288 sec   (664 perm/sec)   p_kst 5.156695e-05   p_cons 2.427111e-01   p_joint 2.680912e-04

Joint ci ratio: 1.275680e-01	ci left: 2.510718e-04	ci right 2.855545e-04	k: 943	n:3520000
Cons ci ratio: 3.690643e-03	ci left: 2.422619e-01	ci right 2.431579e-01	k: 854338	n:3520000
KS ci ratio: 2.905622e-01	ci left: 4.420212e-05	ci right 5.948141e-05	k: 181	n:3520000
LTBP4   3520000 perm   5317 sec   (662 perm/sec)   p_kst 5.142045e-05   p_cons 2.427097e-01   p_joint 2.678977e-04

Joint ci ratio: 1.270308e-01	ci left: 2.525547e-04	ci right 2.870839e-04	k: 951	n:3530000
Cons ci ratio: 3.685404e-03	ci left: 2.422633e-01	ci right 2.431581e-01	k: 856768	n:3530000
KS ci ratio: 2.897672e-01	ci left: 4.433957e-05	ci right 5.961675e-05	k: 182	n:3530000
LTBP4   3530000 perm   5344 sec   (661 perm/sec)   p_kst 5.155807e-05   p_cons 2.427105e-01   p_joint 2.694051e-04

Joint ci ratio: 1.267647e-01	ci left: 2.529354e-04	ci right 2.874387e-04	k: 955	n:3540000
Cons ci ratio: 3.680283e-03	ci left: 2.422552e-01	ci right 2.431486e-01	k: 859164	n:3540000
KS ci ratio: 2.897672e-01	ci left: 4.421432e-05	ci right 5.944834e-05	k: 182	n:3540000
LTBP4   3540000 perm   5372 sec   (659 perm/sec)   p_kst 5.141243e-05   p_cons 2.427017e-01   p_joint 2.697740e-04

Joint ci ratio: 1.266323e-01	ci left: 2.527684e-04	ci right 2.872103e-04	k: 957	n:3550000
Cons ci ratio: 3.675022e-03	ci left: 2.422631e-01	ci right 2.431553e-01	k: 861617	n:3550000
KS ci ratio: 2.897672e-01	ci left: 4.408977e-05	ci right 5.928088e-05	k: 182	n:3550000
LTBP4   3550000 perm   5399 sec   (658 perm/sec)   p_kst 5.126761e-05   p_cons 2.427090e-01   p_joint 2.695775e-04

Joint ci ratio: 1.271646e-01	ci left: 2.498825e-04	ci right 2.840851e-04	k: 949	n:3560000
Cons ci ratio: 3.669852e-03	ci left: 2.422643e-01	ci right 2.431552e-01	k: 864046	n:3560000
KS ci ratio: 2.897672e-01	ci left: 4.396592e-05	ci right 5.911437e-05	k: 182	n:3560000
LTBP4   3560000 perm   5427 sec   (656 perm/sec)   p_kst 5.112360e-05   p_cons 2.427096e-01   p_joint 2.665730e-04

Joint ci ratio: 1.270310e-01	ci left: 2.497249e-04	ci right 2.838673e-04	k: 951	n:3570000
Cons ci ratio: 3.664784e-03	ci left: 2.422573e-01	ci right 2.431470e-01	k: 866446	n:3570000
KS ci ratio: 2.897673e-01	ci left: 4.384277e-05	ci right 5.894878e-05	k: 182	n:3570000
LTBP4   3570000 perm   5454 sec   (655 perm/sec)   p_kst 5.098039e-05   p_cons 2.427020e-01   p_joint 2.663866e-04

Joint ci ratio: 1.269643e-01	ci left: 2.492978e-04	ci right 2.833626e-04	k: 952	n:3580000
Cons ci ratio: 3.659757e-03	ci left: 2.422484e-01	ci right 2.431369e-01	k: 868839	n:3580000
KS ci ratio: 2.897673e-01	ci left: 4.372030e-05	ci right 5.878412e-05	k: 182	n:3580000
LTBP4   3580000 perm   5482 sec   (653 perm/sec)   p_kst 5.083799e-05   p_cons 2.426925e-01   p_joint 2.659218e-04

Joint ci ratio: 1.268313e-01	ci left: 2.491428e-04	ci right 2.831481e-04	k: 954	n:3590000
Cons ci ratio: 3.654769e-03	ci left: 2.422377e-01	ci right 2.431249e-01	k: 871225	n:3590000
KS ci ratio: 2.897673e-01	ci left: 4.359852e-05	ci right 5.862038e-05	k: 182	n:3590000
LTBP4   3590000 perm   5510 sec   (652 perm/sec)   p_kst 5.069638e-05   p_cons 2.426811e-01   p_joint 2.657382e-04

Joint ci ratio: 1.286637e-01	ci left: 2.411904e-04	ci right 2.746221e-04	k: 927	n:3600000
Cons ci ratio: 3.649899e-03	ci left: 2.422172e-01	ci right 2.431032e-01	k: 873576	n:3600000
KS ci ratio: 2.897673e-01	ci left: 4.347741e-05	ci right 5.845754e-05	k: 182	n:3600000
LTBP4   3600000 perm   5539 sec   (650 perm/sec)   p_kst 5.055556e-05   p_cons 2.426600e-01   p_joint 2.575000e-04

Joint ci ratio: 1.283184e-01	ci left: 2.418628e-04	ci right 2.752909e-04	k: 932	n:3610000
Cons ci ratio: 3.644781e-03	ci left: 2.422238e-01	ci right 2.431085e-01	k: 876024	n:3610000
KS ci ratio: 2.897674e-01	ci left: 4.335698e-05	ci right 5.829561e-05	k: 182	n:3610000
LTBP4   3610000 perm   5567 sec   (648 perm/sec)   p_kst 5.041551e-05   p_cons 2.426659e-01   p_joint 2.581717e-04

Joint ci ratio: 1.281811e-01	ci left: 2.417294e-04	ci right 2.751006e-04	k: 934	n:3620000
Cons ci ratio: 3.639652e-03	ci left: 2.422336e-01	ci right 2.431171e-01	k: 878484	n:3620000
KS ci ratio: 2.889788e-01	ci left: 4.349340e-05	ci right 5.843081e-05	k: 183	n:3620000
LTBP4   3620000 perm   5595 sec   (647 perm/sec)   p_kst 5.055249e-05   p_cons 2.426751e-01   p_joint 2.580110e-04

Joint ci ratio: 1.279078e-01	ci left: 2.421301e-04	ci right 2.754800e-04	k: 938	n:3630000
Cons ci ratio: 3.634602e-03	ci left: 2.422376e-01	ci right 2.431199e-01	k: 880923	n:3630000
KS ci ratio: 2.889789e-01	ci left: 4.337358e-05	ci right 5.826984e-05	k: 183	n:3630000
LTBP4   3630000 perm   5624 sec   (645 perm/sec)   p_kst 5.041322e-05   p_cons 2.426785e-01   p_joint 2.584022e-04

Joint ci ratio: 1.277040e-01	ci left: 2.422628e-04	ci right 2.755737e-04	k: 941	n:3640000
Cons ci ratio: 3.629519e-03	ci left: 2.422470e-01	ci right 2.431281e-01	k: 883382	n:3640000
KS ci ratio: 2.889789e-01	ci left: 4.325443e-05	ci right 5.810976e-05	k: 183	n:3640000
LTBP4   3640000 perm   5652 sec   (644 perm/sec)   p_kst 5.027473e-05   p_cons 2.426874e-01   p_joint 2.585165e-04

Joint ci ratio: 1.276363e-01	ci left: 2.418642e-04	ci right 2.751014e-04	k: 942	n:3650000
Cons ci ratio: 3.624635e-03	ci left: 2.422383e-01	ci right 2.431182e-01	k: 885775	n:3650000
KS ci ratio: 2.889789e-01	ci left: 4.313592e-05	ci right 5.795056e-05	k: 183	n:3650000
LTBP4   3650000 perm   5680 sec   (643 perm/sec)   p_kst 5.013699e-05   p_cons 2.426781e-01   p_joint 2.580822e-04

Joint ci ratio: 1.275011e-01	ci left: 2.417324e-04	ci right 2.749136e-04	k: 944	n:3660000
Cons ci ratio: 3.619803e-03	ci left: 2.422264e-01	ci right 2.431051e-01	k: 888156	n:3660000
KS ci ratio: 2.881968e-01	ci left: 4.327151e-05	ci right 5.808517e-05	k: 184	n:3660000
LTBP4   3660000 perm   5709 sec   (641 perm/sec)   p_kst 5.027322e-05   p_cons 2.426656e-01   p_joint 2.579235e-04

Joint ci ratio: 1.275012e-01	ci left: 2.410737e-04	ci right 2.741646e-04	k: 944	n:3670000
Cons ci ratio: 3.614865e-03	ci left: 2.422274e-01	ci right 2.431049e-01	k: 890584	n:3670000
KS ci ratio: 2.881968e-01	ci left: 4.315361e-05	ci right 5.792690e-05	k: 184	n:3670000
LTBP4   3670000 perm   5737 sec   (640 perm/sec)   p_kst 5.013624e-05   p_cons 2.426659e-01   p_joint 2.572207e-04

Joint ci ratio: 1.273665e-01	ci left: 2.409448e-04	ci right 2.739803e-04	k: 946	n:3680000
Cons ci ratio: 3.610040e-03	ci left: 2.422189e-01	ci right 2.430951e-01	k: 892977	n:3680000
KS ci ratio: 2.881968e-01	ci left: 4.303634e-05	ci right 5.776949e-05	k: 184	n:3680000
LTBP4   3680000 perm   5766 sec   (638 perm/sec)   p_kst 5.000000e-05   p_cons 2.426568e-01   p_joint 2.570652e-04

Joint ci ratio: 1.277042e-01	ci left: 2.389800e-04	ci right 2.718396e-04	k: 941	n:3690000
Cons ci ratio: 3.605170e-03	ci left: 2.422169e-01	ci right 2.430919e-01	k: 895394	n:3690000
KS ci ratio: 2.866515e-01	ci left: 4.342265e-05	ci right 5.819390e-05	k: 186	n:3690000
LTBP4   3690000 perm   5794 sec   (637 perm/sec)   p_kst 5.040650e-05   p_cons 2.426542e-01   p_joint 2.550136e-04

Joint ci ratio: 1.275688e-01	ci left: 2.388574e-04	ci right 2.716627e-04	k: 943	n:3700000
Cons ci ratio: 3.600164e-03	ci left: 2.422308e-01	ci right 2.431047e-01	k: 897870	n:3700000
KS ci ratio: 2.858881e-01	ci left: 4.355616e-05	ci right 5.832624e-05	k: 187	n:3700000
LTBP4   3700000 perm   5822 sec   (635 perm/sec)   p_kst 5.054054e-05   p_cons 2.426676e-01   p_joint 2.548649e-04

Joint ci ratio: 1.275014e-01	ci left: 2.384745e-04	ci right 2.712086e-04	k: 944	n:3710000
Cons ci ratio: 3.595247e-03	ci left: 2.422377e-01	ci right 2.431104e-01	k: 900320	n:3710000
KS ci ratio: 2.858881e-01	ci left: 4.343876e-05	ci right 5.816903e-05	k: 187	n:3710000
LTBP4   3710000 perm   5851 sec   (634 perm/sec)   p_kst 5.040431e-05   p_cons 2.426739e-01   p_joint 2.544474e-04

Joint ci ratio: 1.273667e-01	ci left: 2.383540e-04	ci right 2.710343e-04	k: 946	n:3720000
Cons ci ratio: 3.590196e-03	ci left: 2.422604e-01	ci right 2.431320e-01	k: 902829	n:3720000
KS ci ratio: 2.843794e-01	ci left: 4.382118e-05	ci right 5.858864e-05	k: 189	n:3720000
LTBP4   3720000 perm   5880 sec   (633 perm/sec)   p_kst 5.080645e-05   p_cons 2.426960e-01   p_joint 2.543011e-04

Joint ci ratio: 1.270985e-01	ci left: 2.387532e-04	ci right 2.714142e-04	k: 950	n:3730000
Cons ci ratio: 3.585500e-03	ci left: 2.422486e-01	ci right 2.431190e-01	k: 905210	n:3730000
KS ci ratio: 2.828943e-01	ci left: 4.420175e-05	ci right 5.900579e-05	k: 191	n:3730000
LTBP4   3730000 perm   5910 sec   (631 perm/sec)   p_kst 5.120643e-05   p_cons 2.426836e-01   p_joint 2.546917e-04

Joint ci ratio: 1.269651e-01	ci left: 2.386326e-04	ci right 2.712402e-04	k: 952	n:3740000
Cons ci ratio: 3.580851e-03	ci left: 2.422340e-01	ci right 2.431033e-01	k: 907580	n:3740000
KS ci ratio: 2.821605e-01	ci left: 4.433200e-05	ci right 5.913429e-05	k: 192	n:3740000
LTBP4   3740000 perm   5938 sec   (630 perm/sec)   p_kst 5.133690e-05   p_cons 2.426684e-01   p_joint 2.545455e-04

Joint ci ratio: 1.268321e-01	ci left: 2.385127e-04	ci right 2.710672e-04	k: 954	n:3750000
Cons ci ratio: 3.575941e-03	ci left: 2.422483e-01	ci right 2.431164e-01	k: 910058	n:3750000
KS ci ratio: 2.821605e-01	ci left: 4.421379e-05	ci right 5.897660e-05	k: 192	n:3750000
LTBP4   3750000 perm   5967 sec   (628 perm/sec)   p_kst 5.120000e-05   p_cons 2.426821e-01   p_joint 2.544000e-04

Joint ci ratio: 1.268321e-01	ci left: 2.378783e-04	ci right 2.703463e-04	k: 954	n:3760000
Cons ci ratio: 3.571138e-03	ci left: 2.422534e-01	ci right 2.431204e-01	k: 912502	n:3760000
KS ci ratio: 2.821605e-01	ci left: 4.409619e-05	ci right 5.881975e-05	k: 192	n:3760000
LTBP4   3760000 perm   5996 sec   (627 perm/sec)   p_kst 5.106383e-05   p_cons 2.426867e-01   p_joint 2.537234e-04

Joint ci ratio: 1.266333e-01	ci left: 2.380179e-04	ci right 2.704501e-04	k: 957	n:3770000
Cons ci ratio: 3.566491e-03	ci left: 2.422445e-01	ci right 2.431103e-01	k: 914893	n:3770000
KS ci ratio: 2.821605e-01	ci left: 4.397923e-05	ci right 5.866373e-05	k: 192	n:3770000
LTBP4   3770000 perm   6025 sec   (626 perm/sec)   p_kst 5.092838e-05   p_cons 2.426772e-01   p_joint 2.538462e-04

Joint ci ratio: 1.265014e-01	ci left: 2.379005e-04	ci right 2.702805e-04	k: 959	n:3780000
Cons ci ratio: 3.561749e-03	ci left: 2.422473e-01	ci right 2.431119e-01	k: 917328	n:3780000
KS ci ratio: 2.821605e-01	ci left: 4.386288e-05	ci right 5.850854e-05	k: 192	n:3780000
LTBP4   3780000 perm   6054 sec   (624 perm/sec)   p_kst 5.079365e-05   p_cons 2.426794e-01   p_joint 2.537037e-04

Joint ci ratio: 1.263042e-01	ci left: 2.380394e-04	ci right 2.703839e-04	k: 962	n:3790000
Cons ci ratio: 3.557274e-03	ci left: 2.422244e-01	ci right 2.430879e-01	k: 919666	n:3790000
KS ci ratio: 2.814324e-01	ci left: 4.399236e-05	ci right 5.863661e-05	k: 193	n:3790000
LTBP4   3790000 perm   6084 sec   (623 perm/sec)   p_kst 5.092348e-05   p_cons 2.426559e-01   p_joint 2.538259e-04

Joint ci ratio: 1.261732e-01	ci left: 2.379226e-04	ci right 2.702153e-04	k: 964	n:3800000
Cons ci ratio: 3.552584e-03	ci left: 2.422256e-01	ci right 2.430879e-01	k: 922095	n:3800000
KS ci ratio: 2.814324e-01	ci left: 4.387659e-05	ci right 5.848230e-05	k: 193	n:3800000
LTBP4   3800000 perm   6115 sec   (621 perm/sec)   p_kst 5.078947e-05   p_cons 2.426566e-01   p_joint 2.536842e-04

Joint ci ratio: 1.260427e-01	ci left: 2.378065e-04	ci right 2.700476e-04	k: 966	n:3810000
Cons ci ratio: 3.547712e-03	ci left: 2.422475e-01	ci right 2.431087e-01	k: 924603	n:3810000
KS ci ratio: 2.814324e-01	ci left: 4.376142e-05	ci right 5.832881e-05	k: 193	n:3810000
LTBP4   3810000 perm   6145 sec   (620 perm/sec)   p_kst 5.065617e-05   p_cons 2.426780e-01   p_joint 2.535433e-04

Joint ci ratio: 1.258476e-01	ci left: 2.379446e-04	ci right 2.701507e-04	k: 969	n:3820000
Cons ci ratio: 3.543179e-03	ci left: 2.422364e-01	ci right 2.430965e-01	k: 926985	n:3820000
KS ci ratio: 2.807098e-01	ci left: 4.389020e-05	ci right 5.845630e-05	k: 194	n:3820000
LTBP4   3820000 perm   6175 sec   (619 perm/sec)   p_kst 5.078534e-05   p_cons 2.426662e-01   p_joint 2.536649e-04

Joint ci ratio: 1.257181e-01	ci left: 2.378291e-04	ci right 2.699840e-04	k: 971	n:3830000
Cons ci ratio: 3.538562e-03	ci left: 2.422357e-01	ci right 2.430947e-01	k: 929407	n:3830000
KS ci ratio: 2.807098e-01	ci left: 4.377560e-05	ci right 5.830367e-05	k: 194	n:3830000
LTBP4   3830000 perm   6205 sec   (617 perm/sec)   p_kst 5.065274e-05   p_cons 2.426650e-01   p_joint 2.535248e-04

Joint ci ratio: 1.254602e-01	ci left: 2.382187e-04	ci right 2.703553e-04	k: 975	n:3840000
Cons ci ratio: 3.533933e-03	ci left: 2.422382e-01	ci right 2.430960e-01	k: 931841	n:3840000
KS ci ratio: 2.807099e-01	ci left: 4.366160e-05	ci right 5.815184e-05	k: 194	n:3840000
LTBP4   3840000 perm   6235 sec   (616 perm/sec)   p_kst 5.052083e-05   p_cons 2.426669e-01   p_joint 2.539063e-04

Joint ci ratio: 1.265676e-01	ci left: 2.333235e-04	ci right 2.650984e-04	k: 958	n:3850000
Cons ci ratio: 3.529242e-03	ci left: 2.422490e-01	ci right 2.431057e-01	k: 934307	n:3850000
KS ci ratio: 2.807099e-01	ci left: 4.354819e-05	ci right 5.800079e-05	k: 194	n:3850000
LTBP4   3850000 perm   6265 sec   (615 perm/sec)   p_kst 5.038961e-05   p_cons 2.426771e-01   p_joint 2.488312e-04

Joint ci ratio: 1.261735e-01	ci left: 2.342243e-04	ci right 2.660151e-04	k: 964	n:3860000
Cons ci ratio: 3.524521e-03	ci left: 2.422649e-01	ci right 2.431205e-01	k: 936793	n:3860000
KS ci ratio: 2.792813e-01	ci left: 4.391713e-05	ci right 5.840495e-05	k: 196	n:3860000
LTBP4   3860000 perm   6295 sec   (613 perm/sec)   p_kst 5.077720e-05   p_cons 2.426925e-01   p_joint 2.497409e-04

Joint ci ratio: 1.261082e-01	ci left: 2.338693e-04	ci right 2.655943e-04	k: 965	n:3870000
Cons ci ratio: 3.519959e-03	ci left: 2.422660e-01	ci right 2.431205e-01	k: 939222	n:3870000
KS ci ratio: 2.785751e-01	ci left: 4.404398e-05	ci right 5.853046e-05	k: 197	n:3870000
LTBP4   3870000 perm   6324 sec   (612 perm/sec)   p_kst 5.090439e-05   p_cons 2.426930e-01   p_joint 2.493540e-04

Joint ci ratio: 1.259128e-01	ci left: 2.340154e-04	ci right 2.657073e-04	k: 968	n:3880000
Cons ci ratio: 3.515417e-03	ci left: 2.422668e-01	ci right 2.431202e-01	k: 941650	n:3880000
KS ci ratio: 2.778743e-01	ci left: 4.417022e-05	ci right 5.865527e-05	k: 198	n:3880000
LTBP4   3880000 perm   6354 sec   (611 perm/sec)   p_kst 5.103093e-05   p_cons 2.426933e-01   p_joint 2.494845e-04

Joint ci ratio: 1.257831e-01	ci left: 2.339118e-04	ci right 2.655546e-04	k: 970	n:3890000
Cons ci ratio: 3.510820e-03	ci left: 2.422753e-01	ci right 2.431276e-01	k: 944108	n:3890000
KS ci ratio: 2.778743e-01	ci left: 4.405667e-05	ci right 5.850449e-05	k: 198	n:3890000
LTBP4   3890000 perm   6384 sec   (609 perm/sec)   p_kst 5.089974e-05   p_cons 2.427013e-01   p_joint 2.493573e-04

Joint ci ratio: 1.257184e-01	ci left: 2.335603e-04	ci right 2.651382e-04	k: 971	n:3900000
Cons ci ratio: 3.506458e-03	ci left: 2.422610e-01	ci right 2.431122e-01	k: 946477	n:3900000
KS ci ratio: 2.778743e-01	ci left: 4.394370e-05	ci right 5.835448e-05	k: 198	n:3900000
LTBP4   3900000 perm   6414 sec   (608 perm/sec)   p_kst 5.076923e-05   p_cons 2.426864e-01   p_joint 2.489744e-04

Joint ci ratio: 1.653433e-01	ci left: 1.318503e-04	ci right 1.558568e-04	k: 561	n:3910000
Cons ci ratio: 3.415974e-03	ci left: 2.515119e-01	ci right 2.523728e-01	k: 985094	n:3910000
KS ci ratio: 2.778743e-01	ci left: 4.383131e-05	ci right 5.820523e-05	k: 198	n:3910000
LTBP4   3910000 perm   6444 sec   (607 perm/sec)   p_kst 5.063939e-05   p_cons 2.519422e-01   p_joint 1.434783e-04

Joint ci ratio: 1.649037e-01	ci left: 1.322476e-04	ci right 1.562561e-04	k: 564	n:3920000
Cons ci ratio: 3.411550e-03	ci left: 2.515195e-01	ci right 2.523793e-01	k: 987641	n:3920000
KS ci ratio: 2.771788e-01	ci left: 4.395685e-05	ci right 5.832956e-05	k: 199	n:3920000
LTBP4   3920000 perm   6475 sec   (605 perm/sec)   p_kst 5.076531e-05   p_cons 2.519492e-01   p_joint 1.438776e-04

Joint ci ratio: 1.646126e-01	ci left: 1.323990e-04	ci right 1.563883e-04	k: 566	n:3930000
Cons ci ratio: 3.407334e-03	ci left: 2.515060e-01	ci right 2.523646e-01	k: 990105	n:3930000
KS ci ratio: 2.771788e-01	ci left: 4.384500e-05	ci right 5.818114e-05	k: 199	n:3930000
LTBP4   3930000 perm   6505 sec   (604 perm/sec)   p_kst 5.063613e-05   p_cons 2.519351e-01   p_joint 1.440204e-04

Joint ci ratio: 1.644677e-01	ci left: 1.323063e-04	ci right 1.562557e-04	k: 567	n:3940000
Cons ci ratio: 3.403109e-03	ci left: 2.514953e-01	ci right 2.523528e-01	k: 992580	n:3940000
KS ci ratio: 2.771788e-01	ci left: 4.373372e-05	ci right 5.803347e-05	k: 199	n:3940000
LTBP4   3940000 perm   6536 sec   (603 perm/sec)   p_kst 5.050761e-05   p_cons 2.519239e-01   p_joint 1.439086e-04

Joint ci ratio: 1.644677e-01	ci left: 1.319714e-04	ci right 1.558601e-04	k: 567	n:3950000
Cons ci ratio: 3.398845e-03	ci left: 2.514907e-01	ci right 2.523472e-01	k: 995079	n:3950000
KS ci ratio: 2.771788e-01	ci left: 4.362300e-05	ci right 5.788655e-05	k: 199	n:3950000
LTBP4   3950000 perm   6567 sec   (601 perm/sec)   p_kst 5.037975e-05   p_cons 2.519187e-01   p_joint 1.435443e-04

Joint ci ratio: 1.643231e-01	ci left: 1.318803e-04	ci right 1.557294e-04	k: 568	n:3960000
Cons ci ratio: 3.394560e-03	ci left: 2.514902e-01	ci right 2.523456e-01	k: 997594	n:3960000
KS ci ratio: 2.771788e-01	ci left: 4.351284e-05	ci right 5.774037e-05	k: 199	n:3960000
LTBP4   3960000 perm   6597 sec   (600 perm/sec)   p_kst 5.025253e-05   p_cons 2.519177e-01   p_joint 1.434343e-04

Joint ci ratio: 1.641789e-01	ci left: 1.317896e-04	ci right 1.555994e-04	k: 569	n:3970000
Cons ci ratio: 3.390267e-03	ci left: 2.514924e-01	ci right 2.523467e-01	k: 1000120	n:3970000
KS ci ratio: 2.764884e-01	ci left: 4.363764e-05	ci right 5.786426e-05	k: 200	n:3970000
LTBP4   3970000 perm   6628 sec   (599 perm/sec)   p_kst 5.037783e-05   p_cons 2.519194e-01   p_joint 1.433249e-04

Joint ci ratio: 1.641790e-01	ci left: 1.314585e-04	ci right 1.552084e-04	k: 569	n:3980000
Cons ci ratio: 3.385818e-03	ci left: 2.515138e-01	ci right 2.523670e-01	k: 1002722	n:3980000
KS ci ratio: 2.764885e-01	ci left: 4.352800e-05	ci right 5.771888e-05	k: 200	n:3980000
LTBP4   3980000 perm   6659 sec   (598 perm/sec)   p_kst 5.025126e-05   p_cons 2.519402e-01   p_joint 1.429648e-04

Joint ci ratio: 1.641790e-01	ci left: 1.311290e-04	ci right 1.548194e-04	k: 569	n:3990000
Cons ci ratio: 3.381619e-03	ci left: 2.515092e-01	ci right 2.523614e-01	k: 1005221	n:3990000
KS ci ratio: 2.764885e-01	ci left: 4.341891e-05	ci right 5.757422e-05	k: 200	n:3990000
LTBP4   3990000 perm   6690 sec   (596 perm/sec)   p_kst 5.012531e-05   p_cons 2.519351e-01   p_joint 1.426065e-04

Joint ci ratio: 1.638917e-01	ci left: 1.312807e-04	ci right 1.549529e-04	k: 571	n:4000000
Cons ci ratio: 3.377365e-03	ci left: 2.515124e-01	ci right 2.523635e-01	k: 1007751	n:4000000
KS ci ratio: 2.764885e-01	ci left: 4.331036e-05	ci right 5.743028e-05	k: 200	n:4000000
LTBP4   4000000 perm   6721 sec   (595 perm/sec)   p_kst 5.000000e-05   p_cons 2.519378e-01   p_joint 1.427500e-04

Joint ci ratio: 1.637486e-01	ci left: 1.311924e-04	ci right 1.548261e-04	k: 572	n:4010000
Cons ci ratio: 3.373174e-03	ci left: 2.515103e-01	ci right 2.523604e-01	k: 1010260	n:4010000
KS ci ratio: 2.764885e-01	ci left: 4.320235e-05	ci right 5.728706e-05	k: 200	n:4010000
LTBP4   4010000 perm   6753 sec   (594 perm/sec)   p_kst 4.987531e-05   p_cons 2.519352e-01   p_joint 1.426434e-04

Joint ci ratio: 1.631800e-01	ci left: 1.318204e-04	ci right 1.554766e-04	k: 576	n:4020000
Cons ci ratio: 3.369006e-03	ci left: 2.515075e-01	ci right 2.523565e-01	k: 1012766	n:4020000
KS ci ratio: 2.758033e-01	ci left: 4.332642e-05	ci right 5.741050e-05	k: 201	n:4020000
LTBP4   4020000 perm   6784 sec   (593 perm/sec)   p_kst 5.000000e-05   p_cons 2.519318e-01   p_joint 1.432836e-04

Joint ci ratio: 1.653437e-01	ci left: 1.279242e-04	ci right 1.512159e-04	k: 561	n:4030000
Cons ci ratio: 3.364709e-03	ci left: 2.515209e-01	ci right 2.523688e-01	k: 1015337	n:4030000
KS ci ratio: 2.758033e-01	ci left: 4.321891e-05	ci right 5.726804e-05	k: 201	n:4030000
LTBP4   4030000 perm   6816 sec   (591 perm/sec)   p_kst 4.987593e-05   p_cons 2.519447e-01   p_joint 1.392060e-04

Joint ci ratio: 1.665334e-01	ci left: 1.257096e-04	ci right 1.487793e-04	k: 553	n:4040000
Cons ci ratio: 3.360605e-03	ci left: 2.515144e-01	ci right 2.523612e-01	k: 1017828	n:4040000
KS ci ratio: 2.758033e-01	ci left: 4.311193e-05	ci right 5.712629e-05	k: 201	n:4040000
LTBP4   4040000 perm   6847 sec   (590 perm/sec)   p_kst 4.975248e-05   p_cons 2.519376e-01   p_joint 1.368812e-04

Joint ci ratio: 1.662336e-01	ci left: 1.258724e-04	ci right 1.489263e-04	k: 555	n:4050000
Cons ci ratio: 3.356349e-03	ci left: 2.515266e-01	ci right 2.523725e-01	k: 1020395	n:4050000
KS ci ratio: 2.751231e-01	ci left: 4.323534e-05	ci right 5.724916e-05	k: 202	n:4050000
LTBP4   4050000 perm   6878 sec   (589 perm/sec)   p_kst 4.987654e-05   p_cons 2.519494e-01   p_joint 1.370370e-04

Joint ci ratio: 1.680573e-01	ci left: 1.227304e-04	ci right 1.454803e-04	k: 543	n:4060000
Cons ci ratio: 3.352240e-03	ci left: 2.515241e-01	ci right 2.523689e-01	k: 1022902	n:4060000
KS ci ratio: 2.751232e-01	ci left: 4.312885e-05	ci right 5.710815e-05	k: 202	n:4060000
LTBP4   4060000 perm   6909 sec   (588 perm/sec)   p_kst 4.975369e-05   p_cons 2.519463e-01   p_joint 1.337438e-04

Joint ci ratio: 1.677492e-01	ci left: 1.228996e-04	ci right 1.456349e-04	k: 545	n:4070000
Cons ci ratio: 3.348007e-03	ci left: 2.515372e-01	ci right 2.523810e-01	k: 1025473	n:4070000
KS ci ratio: 2.751232e-01	ci left: 4.302288e-05	ci right 5.696784e-05	k: 202	n:4070000
LTBP4   4070000 perm   6940 sec   (586 perm/sec)   p_kst 4.963145e-05   p_cons 2.519590e-01   p_joint 1.339066e-04

Joint ci ratio: 1.675958e-01	ci left: 1.228332e-04	ci right 1.455333e-04	k: 546	n:4080000
Cons ci ratio: 3.343949e-03	ci left: 2.515325e-01	ci right 2.523752e-01	k: 1027971	n:4080000
KS ci ratio: 2.744480e-01	ci left: 4.314565e-05	ci right 5.709015e-05	k: 203	n:4080000
LTBP4   4080000 perm   6972 sec   (585 perm/sec)   p_kst 4.975490e-05   p_cons 2.519537e-01   p_joint 1.338235e-04

Joint ci ratio: 1.330393e-01	ci left: 1.981045e-04	ci right 2.265718e-04	k: 867	n:4090000
Cons ci ratio: 3.339632e-03	ci left: 2.515585e-01	ci right 2.524003e-01	k: 1030595	n:4090000
KS ci ratio: 2.731124e-01	ci left: 4.349559e-05	ci right 5.747305e-05	k: 205	n:4090000
LTBP4   4090000 perm   7003 sec   (584 perm/sec)   p_kst 5.012225e-05   p_cons 2.519792e-01   p_joint 2.119804e-04

Joint ci ratio: 1.328863e-01	ci left: 1.980929e-04	ci right 2.265232e-04	k: 869	n:4100000
Cons ci ratio: 3.335560e-03	ci left: 2.515586e-01	ci right 2.523993e-01	k: 1033113	n:4100000
KS ci ratio: 2.731124e-01	ci left: 4.338951e-05	ci right 5.733287e-05	k: 205	n:4100000
LTBP4   4100000 perm   7034 sec   (583 perm/sec)   p_kst 5.000000e-05   p_cons 2.519788e-01   p_joint 2.119512e-04

Joint ci ratio: 1.354812e-01	ci left: 1.898512e-04	ci right 2.176736e-04	k: 836	n:4110000
Cons ci ratio: 3.331437e-03	ci left: 2.515662e-01	ci right 2.524059e-01	k: 1035662	n:4110000
KS ci ratio: 2.731125e-01	ci left: 4.328393e-05	ci right 5.719337e-05	k: 205	n:4110000
LTBP4   4110000 perm   7065 sec   (582 perm/sec)   p_kst 4.987835e-05   p_cons 2.519859e-01   p_joint 2.034063e-04

Joint ci ratio: 1.352390e-01	ci left: 1.900939e-04	ci right 2.178980e-04	k: 839	n:4120000
Cons ci ratio: 3.327344e-03	ci left: 2.515721e-01	ci right 2.524108e-01	k: 1038204	n:4120000
KS ci ratio: 2.731125e-01	ci left: 4.317888e-05	ci right 5.705456e-05	k: 205	n:4120000
LTBP4   4120000 perm   7097 sec   (581 perm/sec)   p_kst 4.975728e-05   p_cons 2.519913e-01   p_joint 2.036408e-04

Joint ci ratio: 1.351586e-01	ci left: 1.898676e-04	ci right 2.176208e-04	k: 840	n:4130000
Cons ci ratio: 3.323371e-03	ci left: 2.515661e-01	ci right 2.524038e-01	k: 1040697	n:4130000
KS ci ratio: 2.724520e-01	ci left: 4.329990e-05	ci right 5.717506e-05	k: 206	n:4130000
LTBP4   4130000 perm   7128 sec   (579 perm/sec)   p_kst 4.987893e-05   p_cons 2.519847e-01   p_joint 2.033898e-04

Joint ci ratio: 1.347586e-01	ci left: 1.905759e-04	ci right 2.183436e-04	k: 845	n:4140000
Cons ci ratio: 3.319365e-03	ci left: 2.515654e-01	ci right 2.524021e-01	k: 1043212	n:4140000
KS ci ratio: 2.717962e-01	ci left: 4.342038e-05	ci right 5.729494e-05	k: 207	n:4140000
LTBP4   4140000 perm   7161 sec   (578 perm/sec)   p_kst 5.000000e-05   p_cons 2.519836e-01   p_joint 2.041063e-04

Joint ci ratio: 1.346790e-01	ci left: 1.903495e-04	ci right 2.180665e-04	k: 846	n:4150000
Cons ci ratio: 3.315435e-03	ci left: 2.515578e-01	ci right 2.523934e-01	k: 1045698	n:4150000
KS ci ratio: 2.711452e-01	ci left: 4.354031e-05	ci right 5.741420e-05	k: 208	n:4150000
LTBP4   4150000 perm   7194 sec   (577 perm/sec)   p_kst 5.012048e-05   p_cons 2.519754e-01   p_joint 2.038554e-04

Joint ci ratio: 1.346791e-01	ci left: 1.898920e-04	ci right 2.175423e-04	k: 846	n:4160000
Cons ci ratio: 3.311515e-03	ci left: 2.515507e-01	ci right 2.523853e-01	k: 1048186	n:4160000
KS ci ratio: 2.711452e-01	ci left: 4.343565e-05	ci right 5.727619e-05	k: 208	n:4160000
LTBP4   4160000 perm   7225 sec   (576 perm/sec)   p_kst 5.000000e-05   p_cons 2.519678e-01   p_joint 2.033654e-04

Joint ci ratio: 1.350785e-01	ci left: 1.882780e-04	ci right 2.157812e-04	k: 841	n:4170000
Cons ci ratio: 3.307638e-03	ci left: 2.515402e-01	ci right 2.523738e-01	k: 1050660	n:4170000
KS ci ratio: 2.704989e-01	ci left: 4.355502e-05	ci right 5.739489e-05	k: 209	n:4170000
LTBP4   4170000 perm   7258 sec   (575 perm/sec)   p_kst 5.011990e-05   p_cons 2.519568e-01   p_joint 2.016787e-04

Joint ci ratio: 1.345204e-01	ci left: 1.894457e-04	ci right 2.169960e-04	k: 848	n:4180000
Cons ci ratio: 3.303611e-03	ci left: 2.515485e-01	ci right 2.523811e-01	k: 1053212	n:4180000
KS ci ratio: 2.704989e-01	ci left: 4.345082e-05	ci right 5.725758e-05	k: 209	n:4180000
LTBP4   4180000 perm   7290 sec   (573 perm/sec)   p_kst 5.000000e-05   p_cons 2.519646e-01   p_joint 2.028708e-04

Joint ci ratio: 1.351588e-01	ci left: 1.871487e-04	ci right 2.145045e-04	k: 840	n:4190000
Cons ci ratio: 3.299710e-03	ci left: 2.515440e-01	ci right 2.523756e-01	k: 1055711	n:4190000
KS ci ratio: 2.704989e-01	ci left: 4.334711e-05	ci right 5.712093e-05	k: 209	n:4190000
LTBP4   4190000 perm   7322 sec   (572 perm/sec)   p_kst 4.988067e-05   p_cons 2.519597e-01   p_joint 2.004773e-04

Joint ci ratio: 1.351589e-01	ci left: 1.867031e-04	ci right 2.139938e-04	k: 840	n:4200000
Cons ci ratio: 3.295754e-03	ci left: 2.515475e-01	ci right 2.523781e-01	k: 1058243	n:4200000
KS ci ratio: 2.704989e-01	ci left: 4.324391e-05	ci right 5.698493e-05	k: 209	n:4200000
LTBP4   4200000 perm   7354 sec   (571 perm/sec)   p_kst 4.976190e-05   p_cons 2.519626e-01   p_joint 2.000000e-04

Joint ci ratio: 1.351589e-01	ci left: 1.862596e-04	ci right 2.134855e-04	k: 840	n:4210000
Cons ci ratio: 3.291679e-03	ci left: 2.515661e-01	ci right 2.523958e-01	k: 1060839	n:4210000
KS ci ratio: 2.704989e-01	ci left: 4.314119e-05	ci right 5.684957e-05	k: 209	n:4210000
LTBP4   4210000 perm   7386 sec   (570 perm/sec)   p_kst 4.964371e-05   p_cons 2.519808e-01   p_joint 1.995249e-04

Joint ci ratio: 1.347589e-01	ci left: 1.869631e-04	ci right 2.142044e-04	k: 845	n:4220000
Cons ci ratio: 3.287778e-03	ci left: 2.515664e-01	ci right 2.523951e-01	k: 1063358	n:4220000
KS ci ratio: 2.698572e-01	ci left: 4.325988e-05	ci right 5.696783e-05	k: 210	n:4220000
LTBP4   4220000 perm   7419 sec   (569 perm/sec)   p_kst 4.976303e-05   p_cons 2.519806e-01   p_joint 2.002370e-04

Joint ci ratio: 1.344414e-01	ci left: 1.874349e-04	ci right 2.146754e-04	k: 849	n:4230000
Cons ci ratio: 3.283930e-03	ci left: 2.515622e-01	ci right 2.523899e-01	k: 1065858	n:4230000
KS ci ratio: 2.692199e-01	ci left: 4.337804e-05	ci right 5.708550e-05	k: 211	n:4230000
LTBP4   4230000 perm   7452 sec   (568 perm/sec)   p_kst 4.988180e-05   p_cons 2.519759e-01   p_joint 2.007092e-04

Joint ci ratio: 1.342835e-01	ci left: 1.874486e-04	ci right 2.146567e-04	k: 851	n:4240000
Cons ci ratio: 3.279993e-03	ci left: 2.515698e-01	ci right 2.523966e-01	k: 1068408	n:4240000
KS ci ratio: 2.685872e-01	ci left: 4.349568e-05	ci right 5.720258e-05	k: 212	n:4240000
LTBP4   4240000 perm   7485 sec   (566 perm/sec)   p_kst 5.000000e-05   p_cons 2.519830e-01   p_joint 2.007075e-04

Joint ci ratio: 1.140514e-01	ci left: 2.620315e-04	ci right 2.939500e-04	k: 1180	n:4250000
Cons ci ratio: 3.276152e-03	ci left: 2.515680e-01	ci right 2.523937e-01	k: 1070918	n:4250000
KS ci ratio: 2.489130e-01	ci left: 5.109536e-05	ci right 6.583540e-05	k: 247	n:4250000
LTBP4   4250000 perm   7518 sec   (565 perm/sec)   p_kst 5.811765e-05   p_cons 2.519807e-01   p_joint 2.776471e-04

Joint ci ratio: 1.140032e-01	ci left: 2.616444e-04	ci right 2.935014e-04	k: 1181	n:4260000
Cons ci ratio: 3.272406e-03	ci left: 2.515568e-01	ci right 2.523816e-01	k: 1073388	n:4260000
KS ci ratio: 2.489130e-01	ci left: 5.097542e-05	ci right 6.568085e-05	k: 247	n:4260000
LTBP4   4260000 perm   7551 sec   (564 perm/sec)   p_kst 5.798122e-05   p_cons 2.519690e-01   p_joint 2.772300e-04

Joint ci ratio: 1.137628e-01	ci left: 2.621693e-04	ci right 2.940183e-04	k: 1186	n:4270000
Cons ci ratio: 3.268541e-03	ci left: 2.515609e-01	ci right 2.523847e-01	k: 1075923	n:4270000
KS ci ratio: 2.489130e-01	ci left: 5.085604e-05	ci right 6.552703e-05	k: 247	n:4270000
LTBP4   4270000 perm   7583 sec   (563 perm/sec)   p_kst 5.784543e-05   p_cons 2.519726e-01   p_joint 2.777518e-04

Joint ci ratio: 1.140033e-01	ci left: 2.604218e-04	ci right 2.921299e-04	k: 1181	n:4280000
Cons ci ratio: 3.264643e-03	ci left: 2.515703e-01	ci right 2.523931e-01	k: 1078481	n:4280000
KS ci ratio: 2.484127e-01	ci left: 5.095630e-05	ci right 6.562211e-05	k: 248	n:4280000
LTBP4   4280000 perm   7616 sec   (562 perm/sec)   p_kst 5.794393e-05   p_cons 2.519815e-01   p_joint 2.759346e-04

Joint ci ratio: 1.138108e-01	ci left: 2.607206e-04	ci right 2.924079e-04	k: 1185	n:4290000
Cons ci ratio: 3.260856e-03	ci left: 2.515685e-01	ci right 2.523904e-01	k: 1080991	n:4290000
KS ci ratio: 2.479153e-01	ci left: 5.105613e-05	ci right 6.571671e-05	k: 249	n:4290000
LTBP4   4290000 perm   7648 sec   (561 perm/sec)   p_kst 5.804196e-05   p_cons 2.519793e-01   p_joint 2.762238e-04

Joint ci ratio: 1.137150e-01	ci left: 2.605661e-04	ci right 2.922062e-04	k: 1187	n:4300000
Cons ci ratio: 3.257073e-03	ci left: 2.515676e-01	ci right 2.523885e-01	k: 1083505	n:4300000
KS ci ratio: 2.479153e-01	ci left: 5.093739e-05	ci right 6.556388e-05	k: 249	n:4300000
LTBP4   4300000 perm   7681 sec   (560 perm/sec)   p_kst 5.790698e-05   p_cons 2.519779e-01   p_joint 2.760465e-04

Joint ci ratio: 1.136672e-01	ci left: 2.601870e-04	ci right 2.917669e-04	k: 1188	n:4310000
Cons ci ratio: 3.253196e-03	ci left: 2.515793e-01	ci right 2.523993e-01	k: 1086073	n:4310000
KS ci ratio: 2.479153e-01	ci left: 5.081921e-05	ci right 6.541176e-05	k: 249	n:4310000
LTBP4   4310000 perm   7714 sec   (559 perm/sec)   p_kst 5.777262e-05   p_cons 2.519891e-01   p_joint 2.756381e-04

Joint ci ratio: 1.135717e-01	ci left: 2.600345e-04	ci right 2.915676e-04	k: 1190	n:4320000
Cons ci ratio: 3.249392e-03	ci left: 2.515839e-01	ci right 2.524030e-01	k: 1088611	n:4320000
KS ci ratio: 2.474210e-01	ci left: 5.091869e-05	ci right 6.550616e-05	k: 250	n:4320000
LTBP4   4320000 perm   7748 sec   (558 perm/sec)   p_kst 5.787037e-05   p_cons 2.519933e-01   p_joint 2.754630e-04

Joint ci ratio: 1.134290e-01	ci left: 2.601071e-04	ci right 2.916067e-04	k: 1193	n:4330000
Cons ci ratio: 3.245724e-03	ci left: 2.515745e-01	ci right 2.523926e-01	k: 1091088	n:4330000
KS ci ratio: 2.474210e-01	ci left: 5.080109e-05	ci right 6.535488e-05	k: 250	n:4330000
LTBP4   4330000 perm   7781 sec   (556 perm/sec)   p_kst 5.773672e-05   p_cons 2.519834e-01   p_joint 2.755196e-04

Joint ci ratio: 1.133815e-01	ci left: 2.597317e-04	ci right 2.911718e-04	k: 1194	n:4340000
Cons ci ratio: 3.241865e-03	ci left: 2.515886e-01	ci right 2.524057e-01	k: 1093667	n:4340000
KS ci ratio: 2.474210e-01	ci left: 5.068404e-05	ci right 6.520429e-05	k: 250	n:4340000
LTBP4   4340000 perm   7815 sec   (555 perm/sec)   p_kst 5.760369e-05   p_cons 2.519970e-01   p_joint 2.751152e-04

Joint ci ratio: 1.133341e-01	ci left: 2.593579e-04	ci right 2.907388e-04	k: 1195	n:4350000
Cons ci ratio: 3.238383e-03	ci left: 2.515603e-01	ci right 2.523765e-01	k: 1096062	n:4350000
KS ci ratio: 2.474210e-01	ci left: 5.056752e-05	ci right 6.505440e-05	k: 250	n:4350000
LTBP4   4350000 perm   7849 sec   (554 perm/sec)   p_kst 5.747126e-05   p_cons 2.519683e-01   p_joint 2.747126e-04

Joint ci ratio: 1.131451e-01	ci left: 2.596545e-04	ci right 2.910154e-04	k: 1199	n:4360000
Cons ci ratio: 3.234482e-03	ci left: 2.515824e-01	ci right 2.523977e-01	k: 1098676	n:4360000
KS ci ratio: 2.474211e-01	ci left: 5.045154e-05	ci right 6.490519e-05	k: 250	n:4360000
LTBP4   4360000 perm   7882 sec   (553 perm/sec)   p_kst 5.733945e-05   p_cons 2.519899e-01   p_joint 2.750000e-04

Joint ci ratio: 1.130980e-01	ci left: 2.592827e-04	ci right 2.905848e-04	k: 1200	n:4370000
Cons ci ratio: 3.230859e-03	ci left: 2.515735e-01	ci right 2.523879e-01	k: 1101155	n:4370000
KS ci ratio: 2.474211e-01	ci left: 5.033609e-05	ci right 6.475667e-05	k: 250	n:4370000
LTBP4   4370000 perm   7916 sec   (552 perm/sec)   p_kst 5.720824e-05   p_cons 2.519805e-01   p_joint 2.745995e-04

Joint ci ratio: 1.130509e-01	ci left: 2.589126e-04	ci right 2.901561e-04	k: 1201	n:4380000
Cons ci ratio: 3.227325e-03	ci left: 2.515558e-01	ci right 2.523692e-01	k: 1103595	n:4380000
KS ci ratio: 2.474211e-01	ci left: 5.022117e-05	ci right 6.460882e-05	k: 250	n:4380000
LTBP4   4380000 perm   7949 sec   (551 perm/sec)   p_kst 5.707763e-05   p_cons 2.519623e-01   p_joint 2.742009e-04

Joint ci ratio: 1.127698e-01	ci left: 2.596510e-04	ci right 2.909005e-04	k: 1207	n:4390000
Cons ci ratio: 3.223479e-03	ci left: 2.515759e-01	ci right 2.523884e-01	k: 1106201	n:4390000
KS ci ratio: 2.469297e-01	ci left: 5.032045e-05	ci right 6.470352e-05	k: 251	n:4390000
LTBP4   4390000 perm   7983 sec   (550 perm/sec)   p_kst 5.717540e-05   p_cons 2.519820e-01   p_joint 2.749431e-04

Joint ci ratio: 1.125835e-01	ci left: 2.599443e-04	ci right 2.911740e-04	k: 1211	n:4400000
Cons ci ratio: 3.219807e-03	ci left: 2.515771e-01	ci right 2.523887e-01	k: 1108724	n:4400000
KS ci ratio: 2.459555e-01	ci left: 5.063257e-05	ci right 6.503903e-05	k: 253	n:4400000
LTBP4   4400000 perm   8016 sec   (549 perm/sec)   p_kst 5.750000e-05   p_cons 2.519827e-01   p_joint 2.752273e-04

Joint ci ratio: 1.125371e-01	ci left: 2.595753e-04	ci right 2.907469e-04	k: 1212	n:4410000
Cons ci ratio: 3.216154e-03	ci left: 2.515776e-01	ci right 2.523882e-01	k: 1111244	n:4410000
KS ci ratio: 2.459556e-01	ci left: 5.051775e-05	ci right 6.489154e-05	k: 253	n:4410000
LTBP4   4410000 perm   8050 sec   (548 perm/sec)   p_kst 5.736961e-05   p_cons 2.519828e-01   p_joint 2.748299e-04

Joint ci ratio: 1.124445e-01	ci left: 2.594277e-04	ci right 2.905543e-04	k: 1214	n:4420000
Cons ci ratio: 3.212556e-03	ci left: 2.515731e-01	ci right 2.523828e-01	k: 1113742	n:4420000
KS ci ratio: 2.459556e-01	ci left: 5.040346e-05	ci right 6.474473e-05	k: 253	n:4420000
LTBP4   4420000 perm   8084 sec   (547 perm/sec)   p_kst 5.723982e-05   p_cons 2.519778e-01   p_joint 2.746606e-04

Joint ci ratio: 1.123983e-01	ci left: 2.590615e-04	ci right 2.901305e-04	k: 1215	n:4430000
Cons ci ratio: 3.208901e-03	ci left: 2.515768e-01	ci right 2.523856e-01	k: 1116276	n:4430000
KS ci ratio: 2.459556e-01	ci left: 5.028968e-05	ci right 6.459858e-05	k: 253	n:4430000
LTBP4   4430000 perm   8119 sec   (546 perm/sec)   p_kst 5.711061e-05   p_cons 2.519810e-01   p_joint 2.742664e-04

Joint ci ratio: 1.123060e-01	ci left: 2.589158e-04	ci right 2.899402e-04	k: 1217	n:4440000
Cons ci ratio: 3.205352e-03	ci left: 2.515694e-01	ci right 2.523773e-01	k: 1118761	n:4440000
KS ci ratio: 2.459556e-01	ci left: 5.017642e-05	ci right 6.445309e-05	k: 253	n:4440000
LTBP4   4440000 perm   8152 sec   (545 perm/sec)   p_kst 5.698198e-05   p_cons 2.519732e-01   p_joint 2.740991e-04

Joint ci ratio: 1.122139e-01	ci left: 2.587708e-04	ci right 2.897507e-04	k: 1219	n:4450000
Cons ci ratio: 3.201838e-03	ci left: 2.515594e-01	ci right 2.523663e-01	k: 1121234	n:4450000
KS ci ratio: 2.454729e-01	ci left: 5.027454e-05	ci right 6.454678e-05	k: 254	n:4450000
LTBP4   4450000 perm   8187 sec   (544 perm/sec)   p_kst 5.707865e-05   p_cons 2.519627e-01   p_joint 2.739326e-04

Joint ci ratio: 1.122139e-01	ci left: 2.581906e-04	ci right 2.891010e-04	k: 1219	n:4460000
Cons ci ratio: 3.198190e-03	ci left: 2.515664e-01	ci right 2.523725e-01	k: 1123783	n:4460000
KS ci ratio: 2.454729e-01	ci left: 5.016182e-05	ci right 6.440206e-05	k: 254	n:4460000
LTBP4   4460000 perm   8222 sec   (542 perm/sec)   p_kst 5.695067e-05   p_cons 2.519693e-01   p_joint 2.733184e-04

Joint ci ratio: 1.121680e-01	ci left: 2.578304e-04	ci right 2.886843e-04	k: 1220	n:4470000
Cons ci ratio: 3.194673e-03	ci left: 2.515596e-01	ci right 2.523647e-01	k: 1126270	n:4470000
KS ci ratio: 2.454729e-01	ci left: 5.004960e-05	ci right 6.425798e-05	k: 254	n:4470000
LTBP4   4470000 perm   8256 sec   (541 perm/sec)   p_kst 5.682327e-05   p_cons 2.519620e-01   p_joint 2.729306e-04

Joint ci ratio: 1.119847e-01	ci left: 2.581227e-04	ci right 2.889578e-04	k: 1224	n:4480000
Cons ci ratio: 3.191159e-03	ci left: 2.515536e-01	ci right 2.523579e-01	k: 1128761	n:4480000
KS ci ratio: 2.449930e-01	ci left: 5.014738e-05	ci right 6.435145e-05	k: 255	n:4480000
LTBP4   4480000 perm   8290 sec   (540 perm/sec)   p_kst 5.691964e-05   p_cons 2.519556e-01   p_joint 2.732143e-04

Joint ci ratio: 1.118934e-01	ci left: 2.579808e-04	ci right 2.887721e-04	k: 1226	n:4490000
Cons ci ratio: 3.187642e-03	ci left: 2.515495e-01	ci right 2.523528e-01	k: 1131260	n:4490000
KS ci ratio: 2.449930e-01	ci left: 5.003569e-05	ci right 6.420813e-05	k: 255	n:4490000
LTBP4   4490000 perm   8325 sec   (539 perm/sec)   p_kst 5.679287e-05   p_cons 2.519510e-01   p_joint 2.730512e-04

Joint ci ratio: 1.150307e-01	ci left: 2.431569e-04	ci right 2.730479e-04	k: 1160	n:4500000
Cons ci ratio: 3.184086e-03	ci left: 2.515514e-01	ci right 2.523538e-01	k: 1133786	n:4500000
KS ci ratio: 2.449930e-01	ci left: 4.992450e-05	ci right 6.406545e-05	k: 255	n:4500000
LTBP4   4500000 perm   8360 sec   (538 perm/sec)   p_kst 5.666667e-05   p_cons 2.519524e-01   p_joint 2.577778e-04

Joint ci ratio: 1.149318e-01	ci left: 2.430485e-04	ci right 2.728986e-04	k: 1162	n:4510000
Cons ci ratio: 3.180677e-03	ci left: 2.515373e-01	ci right 2.523388e-01	k: 1136240	n:4510000
KS ci ratio: 2.449930e-01	ci left: 4.981381e-05	ci right 6.392339e-05	k: 255	n:4510000
LTBP4   4510000 perm   8394 sec   (537 perm/sec)   p_kst 5.654102e-05   p_cons 2.519379e-01   p_joint 2.576497e-04

Joint ci ratio: 1.149318e-01	ci left: 2.425107e-04	ci right 2.722949e-04	k: 1162	n:4520000
Cons ci ratio: 3.177178e-03	ci left: 2.515352e-01	ci right 2.523359e-01	k: 1138748	n:4520000
KS ci ratio: 2.449930e-01	ci left: 4.970360e-05	ci right 6.378197e-05	k: 255	n:4520000
LTBP4   4520000 perm   8428 sec   (536 perm/sec)   p_kst 5.641593e-05   p_cons 2.519354e-01   p_joint 2.570796e-04

Joint ci ratio: 1.148825e-01	ci left: 2.421898e-04	ci right 2.719209e-04	k: 1163	n:4530000
Cons ci ratio: 3.173551e-03	ci left: 2.515497e-01	ci right 2.523495e-01	k: 1141331	n:4530000
KS ci ratio: 2.449931e-01	ci left: 4.959388e-05	ci right 6.364117e-05	k: 255	n:4530000
LTBP4   4530000 perm   8462 sec   (535 perm/sec)   p_kst 5.629139e-05   p_cons 2.519494e-01   p_joint 2.567329e-04

Joint ci ratio: 1.147347e-01	ci left: 2.422982e-04	ci right 2.720017e-04	k: 1166	n:4540000
Cons ci ratio: 3.170027e-03	ci left: 2.515534e-01	ci right 2.523523e-01	k: 1143865	n:4540000
KS ci ratio: 2.449931e-01	ci left: 4.948464e-05	ci right 6.350099e-05	k: 255	n:4540000
LTBP4   4540000 perm   8497 sec   (534 perm/sec)   p_kst 5.616740e-05   p_cons 2.519526e-01   p_joint 2.568282e-04

Joint ci ratio: 1.146365e-01	ci left: 2.421926e-04	ci right 2.718561e-04	k: 1168	n:4550000
Cons ci ratio: 3.166413e-03	ci left: 2.515690e-01	ci right 2.523671e-01	k: 1146454	n:4550000
KS ci ratio: 2.445159e-01	ci left: 4.958218e-05	ci right 6.359466e-05	k: 256	n:4550000
LTBP4   4550000 perm   8532 sec   (533 perm/sec)   p_kst 5.626374e-05   p_cons 2.519679e-01   p_joint 2.567033e-04

Joint ci ratio: 1.146365e-01	ci left: 2.416615e-04	ci right 2.712599e-04	k: 1168	n:4560000
Cons ci ratio: 3.162944e-03	ci left: 2.515689e-01	ci right 2.523661e-01	k: 1148971	n:4560000
KS ci ratio: 2.445160e-01	ci left: 4.947345e-05	ci right 6.345520e-05	k: 256	n:4560000
LTBP4   4560000 perm   8567 sec   (532 perm/sec)   p_kst 5.614035e-05   p_cons 2.519673e-01   p_joint 2.561404e-04

Joint ci ratio: 1.145386e-01	ci left: 2.415577e-04	ci right 2.711165e-04	k: 1170	n:4570000
Cons ci ratio: 3.159456e-03	ci left: 2.515725e-01	ci right 2.523688e-01	k: 1151505	n:4570000
KS ci ratio: 2.445160e-01	ci left: 4.936519e-05	ci right 6.331635e-05	k: 256	n:4570000
LTBP4   4570000 perm   8602 sec   (531 perm/sec)   p_kst 5.601751e-05   p_cons 2.519705e-01   p_joint 2.560175e-04

Joint ci ratio: 1.144898e-01	ci left: 2.412424e-04	ci right 2.707491e-04	k: 1171	n:4580000
Cons ci ratio: 3.156165e-03	ci left: 2.515538e-01	ci right 2.523492e-01	k: 1153937	n:4580000
KS ci ratio: 2.440416e-01	ci left: 4.946238e-05	ci right 6.340978e-05	k: 257	n:4580000
LTBP4   4580000 perm   8636 sec   (530 perm/sec)   p_kst 5.611354e-05   p_cons 2.519513e-01   p_joint 2.556769e-04

Joint ci ratio: 1.144898e-01	ci left: 2.407168e-04	ci right 2.701593e-04	k: 1171	n:4590000
Cons ci ratio: 3.152615e-03	ci left: 2.515674e-01	ci right 2.523619e-01	k: 1156517	n:4590000
KS ci ratio: 2.440417e-01	ci left: 4.935462e-05	ci right 6.327164e-05	k: 257	n:4590000
LTBP4   4590000 perm   8672 sec   (529 perm/sec)   p_kst 5.599129e-05   p_cons 2.519645e-01   p_joint 2.551198e-04

Joint ci ratio: 1.142949e-01	ci left: 2.410382e-04	ci right 2.704664e-04	k: 1175	n:4600000
Cons ci ratio: 3.149204e-03	ci left: 2.515657e-01	ci right 2.523594e-01	k: 1159027	n:4600000
KS ci ratio: 2.431012e-01	ci left: 4.965558e-05	ci right 6.359536e-05	k: 259	n:4600000
LTBP4   4600000 perm   8706 sec   (528 perm/sec)   p_kst 5.630435e-05   p_cons 2.519624e-01   p_joint 2.554348e-04

Joint ci ratio: 1.141978e-01	ci left: 2.409368e-04	ci right 2.703259e-04	k: 1177	n:4610000
Cons ci ratio: 3.145795e-03	ci left: 2.515651e-01	ci right 2.523580e-01	k: 1161542	n:4610000
KS ci ratio: 2.431012e-01	ci left: 4.954787e-05	ci right 6.345741e-05	k: 259	n:4610000
LTBP4   4610000 perm   8741 sec   (527 perm/sec)   p_kst 5.618221e-05   p_cons 2.519614e-01   p_joint 2.553145e-04

Joint ci ratio: 1.140044e-01	ci left: 2.412564e-04	ci right 2.706313e-04	k: 1181	n:4620000
Cons ci ratio: 3.142422e-03	ci left: 2.515615e-01	ci right 2.523535e-01	k: 1164043	n:4620000
KS ci ratio: 2.431012e-01	ci left: 4.944062e-05	ci right 6.332005e-05	k: 259	n:4620000
LTBP4   4620000 perm   8776 sec   (526 perm/sec)   p_kst 5.606061e-05   p_cons 2.519574e-01   p_joint 2.556277e-04

Joint ci ratio: 1.142464e-01	ci left: 2.396862e-04	ci right 2.689361e-04	k: 1176	n:4630000
Cons ci ratio: 3.139094e-03	ci left: 2.515539e-01	ci right 2.523449e-01	k: 1166525	n:4630000
KS ci ratio: 2.431012e-01	ci left: 4.933384e-05	ci right 6.318329e-05	k: 259	n:4630000
LTBP4   4630000 perm   8811 sec   (525 perm/sec)   p_kst 5.593952e-05   p_cons 2.519492e-01   p_joint 2.539957e-04

Joint ci ratio: 1.141011e-01	ci left: 2.397977e-04	ci right 2.690215e-04	k: 1179	n:4640000
Cons ci ratio: 3.135847e-03	ci left: 2.515378e-01	ci right 2.523280e-01	k: 1168968	n:4640000
KS ci ratio: 2.431012e-01	ci left: 4.922751e-05	ci right 6.304712e-05	k: 259	n:4640000
LTBP4   4640000 perm   8847 sec   (524 perm/sec)   p_kst 5.581897e-05   p_cons 2.519328e-01   p_joint 2.540948e-04

Joint ci ratio: 1.140528e-01	ci left: 2.394910e-04	ci right 2.686641e-04	k: 1180	n:4650000
Cons ci ratio: 3.132461e-03	ci left: 2.515397e-01	ci right 2.523290e-01	k: 1171494	n:4650000
KS ci ratio: 2.426351e-01	ci left: 4.932361e-05	ci right 6.313965e-05	k: 260	n:4650000
LTBP4   4650000 perm   8883 sec   (523 perm/sec)   p_kst 5.591398e-05   p_cons 2.519342e-01   p_joint 2.537634e-04

Joint ci ratio: 1.139563e-01	ci left: 2.393940e-04	ci right 2.685290e-04	k: 1182	n:4660000
Cons ci ratio: 3.129152e-03	ci left: 2.515336e-01	ci right 2.523221e-01	k: 1173983	n:4660000
KS ci ratio: 2.426351e-01	ci left: 4.921777e-05	ci right 6.300416e-05	k: 260	n:4660000
LTBP4   4660000 perm   8918 sec   (523 perm/sec)   p_kst 5.579399e-05   p_cons 2.519277e-01   p_joint 2.536481e-04

Joint ci ratio: 1.138601e-01	ci left: 2.392974e-04	ci right 2.683945e-04	k: 1184	n:4670000
Cons ci ratio: 3.125829e-03	ci left: 2.515305e-01	ci right 2.523182e-01	k: 1176486	n:4670000
KS ci ratio: 2.421716e-01	ci left: 4.931351e-05	ci right 6.309636e-05	k: 261	n:4670000
LTBP4   4670000 perm   8954 sec   (522 perm/sec)   p_kst 5.588865e-05   p_cons 2.519242e-01   p_joint 2.535332e-04

Joint ci ratio: 1.137642e-01	ci left: 2.392013e-04	ci right 2.682605e-04	k: 1186	n:4680000
Cons ci ratio: 3.122423e-03	ci left: 2.515388e-01	ci right 2.523256e-01	k: 1179042	n:4680000
KS ci ratio: 2.421716e-01	ci left: 4.920813e-05	ci right 6.296154e-05	k: 261	n:4680000
LTBP4   4680000 perm   8990 sec   (521 perm/sec)   p_kst 5.576923e-05   p_cons 2.519321e-01   p_joint 2.534188e-04

Joint ci ratio: 1.136207e-01	ci left: 2.393127e-04	ci right 2.683464e-04	k: 1189	n:4690000
Cons ci ratio: 3.119146e-03	ci left: 2.515327e-01	ci right 2.523187e-01	k: 1181531	n:4690000
KS ci ratio: 2.417108e-01	ci left: 4.930351e-05	ci right 6.305341e-05	k: 262	n:4690000
LTBP4   4690000 perm   9025 sec   (520 perm/sec)   p_kst 5.586354e-05   p_cons 2.519256e-01   p_joint 2.535181e-04

Joint ci ratio: 1.139083e-01	ci left: 2.375633e-04	ci right 2.664625e-04	k: 1183	n:4700000
Cons ci ratio: 3.115866e-03	ci left: 2.515282e-01	ci right 2.523134e-01	k: 1184027	n:4700000
KS ci ratio: 2.417108e-01	ci left: 4.919861e-05	ci right 6.291926e-05	k: 262	n:4700000
LTBP4   4700000 perm   9061 sec   (519 perm/sec)   p_kst 5.574468e-05   p_cons 2.519206e-01   p_joint 2.517021e-04

Joint ci ratio: 1.136685e-01	ci left: 2.380903e-04	ci right 2.669885e-04	k: 1188	n:4710000
Cons ci ratio: 3.112636e-03	ci left: 2.515190e-01	ci right 2.523033e-01	k: 1186501	n:4710000
KS ci ratio: 2.407969e-01	ci left: 4.949311e-05	ci right 6.323592e-05	k: 264	n:4710000
LTBP4   4710000 perm   9097 sec   (518 perm/sec)   p_kst 5.605096e-05   p_cons 2.519110e-01   p_joint 2.522293e-04

Joint ci ratio: 1.135254e-01	ci left: 2.382034e-04	ci right 2.670765e-04	k: 1191	n:4720000
Cons ci ratio: 3.109273e-03	ci left: 2.515273e-01	ci right 2.523107e-01	k: 1189057	n:4720000
KS ci ratio: 2.407969e-01	ci left: 4.938825e-05	ci right 6.310194e-05	k: 264	n:4720000
LTBP4   4720000 perm   9133 sec   (517 perm/sec)   p_kst 5.593220e-05   p_cons 2.519189e-01   p_joint 2.523305e-04

Joint ci ratio: 1.134778e-01	ci left: 2.379052e-04	ci right 2.667293e-04	k: 1192	n:4730000
Cons ci ratio: 3.105929e-03	ci left: 2.515344e-01	ci right 2.523171e-01	k: 1191608	n:4730000
KS ci ratio: 2.407969e-01	ci left: 4.928384e-05	ci right 6.296854e-05	k: 264	n:4730000
LTBP4   4730000 perm   9170 sec   (516 perm/sec)   p_kst 5.581395e-05   p_cons 2.519256e-01   p_joint 2.520085e-04

Joint ci ratio: 1.133354e-01	ci left: 2.380182e-04	ci right 2.668174e-04	k: 1195	n:4740000
Cons ci ratio: 3.102568e-03	ci left: 2.515449e-01	ci right 2.523267e-01	k: 1194175	n:4740000
KS ci ratio: 2.398933e-01	ci left: 4.957640e-05	ci right 6.328299e-05	k: 266	n:4740000
LTBP4   4740000 perm   9206 sec   (515 perm/sec)   p_kst 5.611814e-05   p_cons 2.519357e-01   p_joint 2.521097e-04

Joint ci ratio: 1.132408e-01	ci left: 2.379262e-04	ci right 2.666887e-04	k: 1197	n:4750000
Cons ci ratio: 3.099337e-03	ci left: 2.515408e-01	ci right 2.523218e-01	k: 1196673	n:4750000
KS ci ratio: 2.394453e-01	ci left: 4.966991e-05	ci right 6.337291e-05	k: 267	n:4750000
LTBP4   4750000 perm   9243 sec   (514 perm/sec)   p_kst 5.621053e-05   p_cons 2.519312e-01   p_joint 2.520000e-04

Joint ci ratio: 1.130992e-01	ci left: 2.380388e-04	ci right 2.667765e-04	k: 1200	n:4760000
Cons ci ratio: 3.096174e-03	ci left: 2.515298e-01	ci right 2.523100e-01	k: 1199138	n:4760000
KS ci ratio: 2.385568e-01	ci left: 4.996057e-05	ci right 6.368505e-05	k: 269	n:4760000
LTBP4   4760000 perm   9280 sec   (513 perm/sec)   p_kst 5.651261e-05   p_cons 2.519197e-01   p_joint 2.521008e-04

Joint ci ratio: 1.130993e-01	ci left: 2.375398e-04	ci right 2.662172e-04	k: 1200	n:4770000
Cons ci ratio: 3.092923e-03	ci left: 2.515306e-01	ci right 2.523100e-01	k: 1201659	n:4770000
KS ci ratio: 2.385568e-01	ci left: 4.985583e-05	ci right 6.355154e-05	k: 269	n:4770000
LTBP4   4770000 perm   9316 sec   (512 perm/sec)   p_kst 5.639413e-05   p_cons 2.519201e-01   p_joint 2.515723e-04

Joint ci ratio: 1.130052e-01	ci left: 2.374494e-04	ci right 2.660905e-04	k: 1202	n:4780000
Cons ci ratio: 3.089757e-03	ci left: 2.515224e-01	ci right 2.523009e-01	k: 1204137	n:4780000
KS ci ratio: 2.385568e-01	ci left: 4.975153e-05	ci right 6.341859e-05	k: 269	n:4780000
LTBP4   4780000 perm   9353 sec   (511 perm/sec)   p_kst 5.627615e-05   p_cons 2.519115e-01   p_joint 2.514644e-04

Joint ci ratio: 1.128646e-01	ci left: 2.375623e-04	ci right 2.661790e-04	k: 1205	n:4790000
Cons ci ratio: 3.086452e-03	ci left: 2.515324e-01	ci right 2.523101e-01	k: 1206702	n:4790000
KS ci ratio: 2.381163e-01	ci left: 4.984397e-05	ci right 6.350740e-05	k: 270	n:4790000
LTBP4   4790000 perm   9389 sec   (510 perm/sec)   p_kst 5.636743e-05   p_cons 2.519211e-01   p_joint 2.515658e-04

Joint ci ratio: 1.127711e-01	ci left: 2.374723e-04	ci right 2.660529e-04	k: 1207	n:4800000
Cons ci ratio: 3.083336e-03	ci left: 2.515204e-01	ci right 2.522974e-01	k: 1209162	n:4800000
KS ci ratio: 2.376782e-01	ci left: 4.993605e-05	ci right 6.359582e-05	k: 271	n:4800000
LTBP4   4800000 perm   9426 sec   (509 perm/sec)   p_kst 5.645833e-05   p_cons 2.519088e-01   p_joint 2.514583e-04

Joint ci ratio: 1.123995e-01	ci left: 2.385950e-04	ci right 2.672098e-04	k: 1215	n:4810000
Cons ci ratio: 3.080206e-03	ci left: 2.515115e-01	ci right 2.522876e-01	k: 1211636	n:4810000
KS ci ratio: 2.372424e-01	ci left: 5.002776e-05	ci right 6.368385e-05	k: 272	n:4810000
LTBP4   4810000 perm   9463 sec   (508 perm/sec)   p_kst 5.654886e-05   p_cons 2.518994e-01   p_joint 2.525988e-04

Joint ci ratio: 1.139087e-01	ci left: 2.316488e-04	ci right 2.598286e-04	k: 1183	n:4820000
Cons ci ratio: 3.076933e-03	ci left: 2.515212e-01	ci right 2.522965e-01	k: 1214200	n:4820000
KS ci ratio: 2.372424e-01	ci left: 4.992397e-05	ci right 6.355173e-05	k: 272	n:4820000
LTBP4   4820000 perm   9500 sec   (507 perm/sec)   p_kst 5.643154e-05   p_cons 2.519087e-01   p_joint 2.454357e-04

Joint ci ratio: 1.139087e-01	ci left: 2.311692e-04	ci right 2.592907e-04	k: 1183	n:4830000
Cons ci ratio: 3.073743e-03	ci left: 2.515220e-01	ci right 2.522965e-01	k: 1216721	n:4830000
KS ci ratio: 2.372425e-01	ci left: 4.982061e-05	ci right 6.342015e-05	k: 272	n:4830000
LTBP4   4830000 perm   9537 sec   (506 perm/sec)   p_kst 5.631470e-05   p_cons 2.519091e-01   p_joint 2.449275e-04

Joint ci ratio: 1.138126e-01	ci left: 2.310930e-04	ci right 2.591800e-04	k: 1185	n:4840000
Cons ci ratio: 3.070611e-03	ci left: 2.515168e-01	ci right 2.522905e-01	k: 1219213	n:4840000
KS ci ratio: 2.372425e-01	ci left: 4.971767e-05	ci right 6.328912e-05	k: 272	n:4840000
LTBP4   4840000 perm   9574 sec   (506 perm/sec)   p_kst 5.619835e-05   p_cons 2.519035e-01   p_joint 2.448347e-04

Joint ci ratio: 1.137168e-01	ci left: 2.310172e-04	ci right 2.590697e-04	k: 1187	n:4850000
Cons ci ratio: 3.067322e-03	ci left: 2.515323e-01	ci right 2.523052e-01	k: 1221805	n:4850000
KS ci ratio: 2.368091e-01	ci left: 4.980910e-05	ci right 6.337703e-05	k: 273	n:4850000
LTBP4   4850000 perm   9611 sec   (505 perm/sec)   p_kst 5.628866e-05   p_cons 2.519186e-01   p_joint 2.447423e-04

Joint ci ratio: 1.135258e-01	ci left: 2.313415e-04	ci right 2.593830e-04	k: 1191	n:4860000
Cons ci ratio: 3.064258e-03	ci left: 2.515211e-01	ci right 2.522932e-01	k: 1224268	n:4860000
KS ci ratio: 2.368092e-01	ci left: 4.970661e-05	ci right 6.324663e-05	k: 273	n:4860000
LTBP4   4860000 perm   9648 sec   (504 perm/sec)   p_kst 5.617284e-05   p_cons 2.519070e-01   p_joint 2.450617e-04

Joint ci ratio: 1.133832e-01	ci left: 2.314650e-04	ci right 2.594839e-04	k: 1194	n:4870000
Cons ci ratio: 3.061154e-03	ci left: 2.515161e-01	ci right 2.522874e-01	k: 1226761	n:4870000
KS ci ratio: 2.359496e-01	ci left: 4.999090e-05	ci right 6.355171e-05	k: 275	n:4870000
LTBP4   4870000 perm   9685 sec   (503 perm/sec)   p_kst 5.646817e-05   p_cons 2.519016e-01   p_joint 2.451745e-04

Joint ci ratio: 1.132885e-01	ci left: 2.313889e-04	ci right 2.593736e-04	k: 1196	n:4880000
Cons ci ratio: 3.058048e-03	ci left: 2.515126e-01	ci right 2.522831e-01	k: 1229261	n:4880000
KS ci ratio: 2.359496e-01	ci left: 4.988846e-05	ci right 6.342148e-05	k: 275	n:4880000
LTBP4   4880000 perm   9721 sec   (502 perm/sec)   p_kst 5.635246e-05   p_cons 2.518977e-01   p_joint 2.450820e-04

Joint ci ratio: 1.132412e-01	ci left: 2.311144e-04	ci right 2.590535e-04	k: 1197	n:4890000
Cons ci ratio: 3.054921e-03	ci left: 2.515128e-01	ci right 2.522826e-01	k: 1231779	n:4890000
KS ci ratio: 2.355233e-01	ci left: 4.997886e-05	ci right 6.350834e-05	k: 276	n:4890000
LTBP4   4890000 perm   9758 sec   (501 perm/sec)   p_kst 5.644172e-05   p_cons 2.518975e-01   p_joint 2.447853e-04

Joint ci ratio: 1.130997e-01	ci left: 2.312377e-04	ci right 2.591544e-04	k: 1200	n:4900000
Cons ci ratio: 3.051757e-03	ci left: 2.515187e-01	ci right 2.522877e-01	k: 1234325	n:4900000
KS ci ratio: 2.350993e-01	ci left: 5.006892e-05	ci right 6.359482e-05	k: 277	n:4900000
LTBP4   4900000 perm   9795 sec   (500 perm/sec)   p_kst 5.653061e-05   p_cons 2.519031e-01   p_joint 2.448980e-04

Joint ci ratio: 1.130056e-01	ci left: 2.311625e-04	ci right 2.590454e-04	k: 1202	n:4910000
Cons ci ratio: 3.048632e-03	ci left: 2.515212e-01	ci right 2.522893e-01	k: 1236854	n:4910000
KS ci ratio: 2.350993e-01	ci left: 4.996694e-05	ci right 6.346530e-05	k: 277	n:4910000
LTBP4   4910000 perm   9833 sec   (499 perm/sec)   p_kst 5.641548e-05   p_cons 2.519051e-01   p_joint 2.448065e-04

Joint ci ratio: 1.127248e-01	ci left: 2.318778e-04	ci right 2.597728e-04	k: 1208	n:4920000
Cons ci ratio: 3.045611e-03	ci left: 2.515118e-01	ci right 2.522792e-01	k: 1239325	n:4920000
KS ci ratio: 2.350993e-01	ci left: 4.986538e-05	ci right 6.333631e-05	k: 277	n:4920000
LTBP4   4920000 perm   9871 sec   (498 perm/sec)   p_kst 5.630081e-05   p_cons 2.518953e-01   p_joint 2.455285e-04

Joint ci ratio: 1.126317e-01	ci left: 2.318017e-04	ci right 2.596630e-04	k: 1210	n:4930000
Cons ci ratio: 3.042564e-03	ci left: 2.515067e-01	ci right 2.522733e-01	k: 1241817	n:4930000
KS ci ratio: 2.350993e-01	ci left: 4.976424e-05	ci right 6.320784e-05	k: 277	n:4930000
LTBP4   4930000 perm   9908 sec   (498 perm/sec)   p_kst 5.618661e-05   p_cons 2.518899e-01   p_joint 2.454361e-04

Joint ci ratio: 1.135737e-01	ci left: 2.273984e-04	ci right 2.549744e-04	k: 1190	n:4940000
Cons ci ratio: 3.039526e-03	ci left: 2.515019e-01	ci right 2.522677e-01	k: 1244310	n:4940000
KS ci ratio: 2.350993e-01	ci left: 4.966350e-05	ci right 6.307989e-05	k: 277	n:4940000
LTBP4   4940000 perm   9946 sec   (497 perm/sec)   p_kst 5.607287e-05   p_cons 2.518846e-01   p_joint 2.408907e-04

Joint ci ratio: 1.135261e-01	ci left: 2.271352e-04	ci right 2.546670e-04	k: 1191	n:4950000
Cons ci ratio: 3.036481e-03	ci left: 2.514988e-01	ci right 2.522639e-01	k: 1246812	n:4950000
KS ci ratio: 2.346776e-01	ci left: 4.975330e-05	ci right 6.316634e-05	k: 278	n:4950000
LTBP4   4950000 perm   9983 sec   (496 perm/sec)   p_kst 5.616162e-05   p_cons 2.518812e-01   p_joint 2.406061e-04

Joint ci ratio: 1.135261e-01	ci left: 2.266773e-04	ci right 2.541536e-04	k: 1191	n:4960000
Cons ci ratio: 3.033419e-03	ci left: 2.514993e-01	ci right 2.522635e-01	k: 1249331	n:4960000
KS ci ratio: 2.346776e-01	ci left: 4.965299e-05	ci right 6.303899e-05	k: 278	n:4960000
LTBP4   4960000 perm   10021 sec   (495 perm/sec)   p_kst 5.604839e-05   p_cons 2.518813e-01   p_joint 2.401210e-04

Joint ci ratio: 1.145398e-01	ci left: 2.221164e-04	ci right 2.492964e-04	k: 1170	n:4970000
Cons ci ratio: 3.030425e-03	ci left: 2.514923e-01	ci right 2.522557e-01	k: 1251813	n:4970000
KS ci ratio: 2.346777e-01	ci left: 4.955309e-05	ci right 6.291215e-05	k: 278	n:4970000
LTBP4   4970000 perm   10058 sec   (494 perm/sec)   p_kst 5.593561e-05   p_cons 2.518738e-01   p_joint 2.354125e-04

Joint ci ratio: 1.141989e-01	ci left: 2.230358e-04	ci right 2.502416e-04	k: 1177	n:4980000
Cons ci ratio: 3.027345e-03	ci left: 2.514971e-01	ci right 2.522598e-01	k: 1254354	n:4980000
KS ci ratio: 2.342582e-01	ci left: 4.964259e-05	ci right 6.299840e-05	k: 279	n:4980000
LTBP4   4980000 perm   10096 sec   (493 perm/sec)   p_kst 5.602410e-05   p_cons 2.518783e-01   p_joint 2.363454e-04

Joint ci ratio: 1.140538e-01	ci left: 2.231728e-04	ci right 2.503585e-04	k: 1180	n:4990000
Cons ci ratio: 3.024346e-03	ci left: 2.514929e-01	ci right 2.522549e-01	k: 1256850	n:4990000
KS ci ratio: 2.342582e-01	ci left: 4.954311e-05	ci right 6.287215e-05	k: 279	n:4990000
LTBP4   4990000 perm   10134 sec   (492 perm/sec)   p_kst 5.591182e-05   p_cons 2.518737e-01   p_joint 2.364729e-04

Joint ci ratio: 1.140538e-01	ci left: 2.227265e-04	ci right 2.498578e-04	k: 1180	n:5000000
Cons ci ratio: 3.021389e-03	ci left: 2.514848e-01	ci right 2.522459e-01	k: 1259326	n:5000000
KS ci ratio: 2.342582e-01	ci left: 4.944402e-05	ci right 6.274640e-05	k: 279	n:5000000
LTBP4   5000000 perm   10173 sec   (491 perm/sec)   p_kst 5.580000e-05   p_cons 2.518652e-01   p_joint 2.360000e-04

Outputting figure to mutsig2_images.part000000000100/LTBP4.6_5299_5000000_5.58e-05_0.25187_0.000236.png
                gene_name: LTBP4
               theta_stop: 0.23 
                    nperm: 5000000 
                     p_ks: 5.58e-05 
        ci_ks_bounds_left: 4.94e-05 
       ci_ks_bounds_right: 6.27e-05 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.00024 
     ci_joint_bounds_left: 0.00022 
    ci_joint_bounds_right: 0.00025 

Current progress: 16 percent done.
LY75
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.365803e-01	ci left: 7.088017e-02	ci right 8.136835e-02	k: 760	n:10000
Cons ci ratio: 2.936549e-02	ci left: 6.310052e-01	ci right 6.499129e-01	k: 6405	n:10000
KS ci ratio: 2.344190e-01	ci left: 2.400584e-02	ci right 3.047352e-02	k: 271	n:10000
LY75   10000 perm   2 sec   (4940 perm/sec)   p_kst 2.710000e-02   p_cons 6.405000e-01   p_joint 7.600000e-02

Joint ci ratio: 1.121678e-01	ci left: 5.431319e-02	ci right 6.081619e-02	k: 1150	n:20000
Cons ci ratio: 2.085120e-02	ci left: 6.318973e-01	ci right 6.452624e-01	k: 12772	n:20000
KS ci ratio: 1.645238e-01	ci left: 2.532545e-02	ci right 2.991327e-02	k: 551	n:20000
LY75   20000 perm   4 sec   (4513 perm/sec)   p_kst 2.755000e-02   p_cons 6.386000e-01   p_joint 5.750000e-02

Joint ci ratio: 8.838394e-02	ci left: 5.880731e-02	ci right 6.427798e-02	k: 1845	n:30000
Cons ci ratio: 1.698710e-02	ci left: 6.341705e-01	ci right 6.450691e-01	k: 19189	n:30000
KS ci ratio: 1.362065e-01	ci left: 2.503400e-02	ci right 2.872506e-02	k: 805	n:30000
LY75   30000 perm   7 sec   (4335 perm/sec)   p_kst 2.683333e-02   p_cons 6.396333e-01   p_joint 6.150000e-02

Joint ci ratio: 7.968339e-02	ci left: 5.477224e-02	ci right 5.934233e-02	k: 2281	n:40000
Cons ci ratio: 1.469808e-02	ci left: 6.353237e-01	ci right 6.447560e-01	k: 25602	n:40000
KS ci ratio: 1.165002e-01	ci left: 2.591926e-02	ci right 2.914982e-02	k: 1100	n:40000
LY75   40000 perm   10 sec   (4019 perm/sec)   p_kst 2.750000e-02   p_cons 6.400500e-01   p_joint 5.702500e-02

Joint ci ratio: 7.316005e-02	ci left: 5.230999e-02	ci right 5.630195e-02	k: 2714	n:50000
Cons ci ratio: 1.312161e-02	ci left: 6.366970e-01	ci right 6.451267e-01	k: 32046	n:50000
KS ci ratio: 1.040555e-01	ci left: 2.616203e-02	ci right 2.905316e-02	k: 1379	n:50000
LY75   50000 perm   13 sec   (3965 perm/sec)   p_kst 2.758000e-02   p_cons 6.409200e-01   p_joint 5.428000e-02

Joint ci ratio: 6.380579e-02	ci left: 5.729184e-02	ci right 6.108427e-02	k: 3550	n:60000
Cons ci ratio: 1.197499e-02	ci left: 6.371966e-01	ci right 6.448897e-01	k: 38463	n:60000
KS ci ratio: 9.507796e-02	ci left: 2.623859e-02	ci right 2.887404e-02	k: 1652	n:60000
LY75   60000 perm   15 sec   (3881 perm/sec)   p_kst 2.753333e-02   p_cons 6.410500e-01   p_joint 5.916667e-02

Outputting figure to mutsig2_images.part000000000100/LY75.6_5309_60000_0.027533_0.64105_0.059167.png
                gene_name: LY75
               theta_stop: 0.095 
                    nperm: 60000 
                     p_ks: 0.028 
        ci_ks_bounds_left: 0.026 
       ci_ks_bounds_right: 0.029 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.059 
     ci_joint_bounds_left: 0.057 
    ci_joint_bounds_right: 0.061 

Current progress: 19 percent done.
LY9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.156329e-02	ci left: 7.592958e-01	ci right 7.759480e-01	k: 7677	n:10000
Cons ci ratio: 2.929540e-02	ci left: 6.321112e-01	ci right 6.510063e-01	k: 6416	n:10000
KS ci ratio: 2.885105e-02	ci left: 6.391508e-01	ci right 6.579626e-01	k: 6486	n:10000
LY9   10000 perm   2 sec   (5249 perm/sec)   p_kst 6.486000e-01   p_cons 6.416000e-01   p_joint 7.677000e-01

Outputting figure to mutsig2_images.part000000000100/LY9.6_2140_10000_0.6486_0.6416_0.7677.png
                gene_name: LY9
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 22 percent done.
MACROD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.147777e-02	ci left: 9.156427e-01	ci right 9.263105e-01	k: 9211	n:10000
Cons ci ratio: 3.836432e-02	ci left: 5.008505e-01	ci right 5.205433e-01	k: 5107	n:10000
KS ci ratio: 1.985756e-02	ci left: 7.877635e-01	ci right 8.036639e-01	k: 7958	n:10000
MACROD2   10000 perm   2 sec   (5950 perm/sec)   p_kst 7.958000e-01   p_cons 5.107000e-01   p_joint 9.211000e-01

Outputting figure to mutsig2_images.part000000000100/MACROD2.6_1419_10000_0.7958_0.5107_0.9211.png
                gene_name: MACROD2
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 24 percent done.
MAD1L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.668649e-02	ci left: 4.037247e-01	ci right 4.231258e-01	k: 4134	n:10000
Cons ci ratio: 8.857514e-03	ci left: 9.471062e-01	ci right 9.556284e-01	k: 9515	n:10000
KS ci ratio: 7.162196e-02	ci left: 2.221762e-01	ci right 2.387810e-01	k: 2304	n:10000
MAD1L1   10000 perm   2 sec   (5701 perm/sec)   p_kst 2.304000e-01   p_cons 9.515000e-01   p_joint 4.134000e-01

Outputting figure to mutsig2_images.part000000000100/MAD1L1.6_2225_10000_0.2304_0.9515_0.4134.png
                gene_name: MAD1L1
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 27 percent done.
MACC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.597573e-02	ci left: 8.505966e-01	ci right 8.643944e-01	k: 8576	n:10000
Cons ci ratio: 2.976835e-02	ci left: 6.246718e-01	ci right 6.436500e-01	k: 6342	n:10000
KS ci ratio: 2.893336e-02	ci left: 6.378433e-01	ci right 6.566709e-01	k: 6473	n:10000
MACC1   10000 perm   2 sec   (5375 perm/sec)   p_kst 6.473000e-01   p_cons 6.342000e-01   p_joint 8.576000e-01

Outputting figure to mutsig2_images.part000000000100/MACC1.5_2575_10000_0.6473_0.6342_0.8576.png
                gene_name: MACC1
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 30 percent done.
MADD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.306014e-02	ci left: 7.342143e-01	ci right 7.514440e-01	k: 7429	n:10000
Cons ci ratio: 3.255939e-02	ci left: 5.819908e-01	ci right 6.013557e-01	k: 5917	n:10000
KS ci ratio: 2.605868e-02	ci left: 6.843584e-01	ci right 7.025288e-01	k: 6935	n:10000
MADD   10000 perm   2 sec   (4799 perm/sec)   p_kst 6.935000e-01   p_cons 5.917000e-01   p_joint 7.429000e-01

Outputting figure to mutsig2_images.part000000000100/MADD.5_5084_10000_0.6935_0.5917_0.7429.png
                gene_name: MADD
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 32 percent done.
LZTR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.652095e-02	ci left: 8.420346e-01	ci right 8.561614e-01	k: 8492	n:10000
Cons ci ratio: 4.737048e-03	ci left: 9.831763e-01	ci right 9.879347e-01	k: 9857	n:10000
KS ci ratio: 2.608933e-02	ci left: 6.838544e-01	ci right 7.020331e-01	k: 6930	n:10000
LZTR1   10000 perm   2 sec   (5661 perm/sec)   p_kst 6.930000e-01   p_cons 9.857000e-01   p_joint 8.492000e-01

Outputting figure to mutsig2_images.part000000000100/LZTR1.4_2607_10000_0.693_0.9857_0.8492.png
                gene_name: LZTR1
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 35 percent done.
LZTS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.549450e-02	ci left: 4.162808e-01	ci right 4.357623e-01	k: 4260	n:10000
KS ci ratio: 1.593649e-02	ci left: 8.512085e-01	ci right 8.649822e-01	k: 8582	n:10000
LZTS1   10000 perm   2 sec   (5927 perm/sec)   p_kst 8.582000e-01   p_cons 4.260000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000100/LZTS1.4_1803_10000_0.8582_0.426_1.png
                gene_name: LZTS1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 38 percent done.
MAEL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.313860e-02	ci left: 7.329006e-01	ci right 7.501585e-01	k: 7416	n:10000
Cons ci ratio: 3.774740e-02	ci left: 5.089528e-01	ci right 5.286362e-01	k: 5188	n:10000
KS ci ratio: 4.533675e-02	ci left: 4.179754e-01	ci right 4.374667e-01	k: 4277	n:10000
MAEL   10000 perm   2 sec   (6507 perm/sec)   p_kst 4.277000e-01   p_cons 5.188000e-01   p_joint 7.416000e-01

Outputting figure to mutsig2_images.part000000000100/MAEL.4_1353_10000_0.4277_0.5188_0.7416.png
                gene_name: MAEL
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 41 percent done.
LTK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.153307e-02	ci left: 7.598019e-01	ci right 7.764417e-01	k: 7682	n:10000
Cons ci ratio: 4.561562e-02	ci left: 4.149851e-01	ci right 4.344588e-01	k: 4247	n:10000
KS ci ratio: 1.724346e-02	ci left: 8.305285e-01	ci right 8.450741e-01	k: 8379	n:10000
LTK   10000 perm   2 sec   (5921 perm/sec)   p_kst 8.379000e-01   p_cons 4.247000e-01   p_joint 7.682000e-01

Outputting figure to mutsig2_images.part000000000100/LTK.3_2675_10000_0.8379_0.4247_0.7682.png
                gene_name: LTK
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 43 percent done.
LUC7L3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.058452e-02	ci left: 2.860725e-01	ci right 3.040471e-01	k: 2950	n:10000
Cons ci ratio: 9.480348e-02	ci left: 1.390351e-01	ci right 1.529718e-01	k: 1459	n:10000
KS ci ratio: 8.546557e-02	ci left: 1.663205e-01	ci right 1.812701e-01	k: 1737	n:10000
LUC7L3   10000 perm   2 sec   (6376 perm/sec)   p_kst 1.737000e-01   p_cons 1.459000e-01   p_joint 2.950000e-01

Outputting figure to mutsig2_images.part000000000100/LUC7L3.3_1339_10000_0.1737_0.1459_0.295.png
                gene_name: LUC7L3
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 46 percent done.
LUZP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.907736e-02	ci left: 3.798263e-01	ci right 3.990382e-01	k: 3894	n:10000
Cons ci ratio: 8.028430e-02	ci left: 1.847145e-01	ci right 2.002650e-01	k: 1924	n:10000
KS ci ratio: 8.184094e-02	ci left: 1.789079e-01	ci right 1.942751e-01	k: 1865	n:10000
LUZP1   10000 perm   2 sec   (5574 perm/sec)   p_kst 1.865000e-01   p_cons 1.924000e-01   p_joint 3.894000e-01

Outputting figure to mutsig2_images.part000000000100/LUZP1.3_3239_10000_0.1865_0.1924_0.3894.png
                gene_name: LUZP1
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 49 percent done.
LYNX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.267511e-02	ci left: 8.994953e-01	ci right 9.110674e-01	k: 9054	n:10000
KS ci ratio: 2.276448e-02	ci left: 7.391670e-01	ci right 7.562885e-01	k: 7478	n:10000
LYNX1   10000 perm   1 sec   (6829 perm/sec)   p_kst 7.478000e-01   p_cons 9.054000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000100/LYNX1.3_669_10000_0.7478_0.9054_1.png
                gene_name: LYNX1
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 51 percent done.
LYPLA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.268333e-01	ci left: 1.861361e-03	ci right 4.044256e-03	k: 28	n:10000
Cons ci ratio: 1.385306e+00	ci left: 2.814811e-04	ci right 1.441732e-03	k: 7	n:10000
KS ci ratio: 5.360916e-02	ci left: 3.389574e-01	ci right 3.577310e-01	k: 3483	n:10000
LYPLA1   10000 perm   1 sec   (6674 perm/sec)   p_kst 3.483000e-01   p_cons 7.000000e-04   p_joint 2.800000e-03

Joint ci ratio: 5.095746e-01	ci left: 2.202806e-03	ci right 3.747331e-03	k: 58	n:20000
Cons ci ratio: 1.131239e+00	ci left: 2.745890e-04	ci right 9.838883e-04	k: 11	n:20000
KS ci ratio: 3.789065e-02	ci left: 3.419434e-01	ci right 3.552006e-01	k: 6971	n:20000
LYPLA1   20000 perm   3 sec   (5931 perm/sec)   p_kst 3.485500e-01   p_cons 5.500000e-04   p_joint 2.900000e-03

Joint ci ratio: 5.905189e-01	ci left: 1.037499e-03	ci right 1.930210e-03	k: 43	n:30000
Cons ci ratio: 1.086959e+00	ci left: 2.067024e-04	ci right 6.986151e-04	k: 12	n:30000
KS ci ratio: 3.074327e-02	ci left: 3.460289e-01	ci right 3.568666e-01	k: 10543	n:30000
LYPLA1   30000 perm   5 sec   (5636 perm/sec)   p_kst 3.514333e-01   p_cons 4.000000e-04   p_joint 1.433333e-03

Joint ci ratio: 5.234587e-01	ci left: 1.036001e-03	ci right 1.789380e-03	k: 55	n:40000
Cons ci ratio: 9.797917e-01	ci left: 2.098994e-04	ci right 6.184302e-04	k: 15	n:40000
KS ci ratio: 2.650467e-02	ci left: 3.488134e-01	ci right 3.582079e-01	k: 14140	n:40000
LYPLA1   40000 perm   7 sec   (5424 perm/sec)   p_kst 3.535000e-01   p_cons 3.750000e-04   p_joint 1.375000e-03

Joint ci ratio: 5.486243e-01	ci left: 7.423075e-04	ci right 1.318165e-03	k: 50	n:50000
Cons ci ratio: 8.763546e-01	ci left: 2.287998e-04	ci right 5.933537e-04	k: 19	n:50000
KS ci ratio: 2.362090e-02	ci left: 3.509638e-01	ci right 3.593730e-01	k: 17758	n:50000
LYPLA1   50000 perm   9 sec   (5268 perm/sec)   p_kst 3.551600e-01   p_cons 3.800000e-04   p_joint 1.000000e-03

Joint ci ratio: 5.777461e-01	ci left: 5.471061e-04	ci right 1.003432e-03	k: 45	n:60000
Cons ci ratio: 7.999999e-01	ci left: 2.430155e-04	ci right 5.751330e-04	k: 23	n:60000
KS ci ratio: 2.153994e-02	ci left: 3.518183e-01	ci right 3.594956e-01	k: 21339	n:60000
LYPLA1   60000 perm   12 sec   (5138 perm/sec)   p_kst 3.556500e-01   p_cons 3.833333e-04   p_joint 7.500000e-04

Joint ci ratio: 4.494075e-01	ci left: 8.428369e-04	ci right 1.342863e-03	k: 75	n:70000
Cons ci ratio: 7.406569e-01	ci left: 2.542030e-04	ci right 5.611448e-04	k: 27	n:70000
KS ci ratio: 2.000608e-02	ci left: 3.506417e-01	ci right 3.577418e-01	k: 24793	n:70000
LYPLA1   70000 perm   14 sec   (5021 perm/sec)   p_kst 3.541857e-01   p_cons 3.857143e-04   p_joint 1.071429e-03

Joint ci ratio: 4.823166e-01	ci left: 6.271246e-04	ci right 1.035482e-03	k: 65	n:80000
Cons ci ratio: 7.155521e-01	ci left: 2.427850e-04	ci right 5.205693e-04	k: 29	n:80000
KS ci ratio: 1.872472e-02	ci left: 3.506105e-01	ci right 3.572501e-01	k: 28314	n:80000
LYPLA1   80000 perm   16 sec   (4918 perm/sec)   p_kst 3.539250e-01   p_cons 3.625000e-04   p_joint 8.125000e-04

Joint ci ratio: 3.957620e-01	ci left: 8.740894e-04	ci right 1.314642e-03	k: 97	n:90000
Cons ci ratio: 6.531990e-01	ci left: 2.708898e-04	ci right 5.408092e-04	k: 35	n:90000
KS ci ratio: 1.761418e-02	ci left: 3.518286e-01	ci right 3.580919e-01	k: 31946	n:90000
LYPLA1   90000 perm   19 sec   (4821 perm/sec)   p_kst 3.549556e-01   p_cons 3.888889e-04   p_joint 1.077778e-03

Joint ci ratio: 4.436772e-01	ci left: 6.077183e-04	ci right 9.622753e-04	k: 77	n:100000
Cons ci ratio: 6.357840e-01	ci left: 2.605271e-04	ci right 5.099606e-04	k: 37	n:100000
KS ci ratio: 1.671271e-02	ci left: 3.519236e-01	ci right 3.578648e-01	k: 35489	n:100000
LYPLA1   100000 perm   21 sec   (4728 perm/sec)   p_kst 3.548900e-01   p_cons 3.700000e-04   p_joint 7.700000e-04

Joint ci ratio: 4.250175e-01	ci left: 6.091506e-04	ci right 9.453478e-04	k: 84	n:110000
Cons ci ratio: 6.047509e-01	ci left: 2.674884e-04	ci right 5.056130e-04	k: 41	n:110000
KS ci ratio: 1.594760e-02	ci left: 3.516997e-01	ci right 3.573626e-01	k: 38998	n:110000
LYPLA1   110000 perm   24 sec   (4645 perm/sec)   p_kst 3.545273e-01   p_cons 3.727273e-04   p_joint 7.636364e-04

Joint ci ratio: 4.041571e-01	ci left: 6.255692e-04	ci right 9.493445e-04	k: 93	n:120000
Cons ci ratio: 5.778593e-01	ci left: 2.735403e-04	ci right 5.017477e-04	k: 45	n:120000
KS ci ratio: 1.526821e-02	ci left: 3.518344e-01	ci right 3.572559e-01	k: 42545	n:120000
LYPLA1   120000 perm   26 sec   (4565 perm/sec)   p_kst 3.545417e-01   p_cons 3.750000e-04   p_joint 7.750000e-04

Joint ci ratio: 4.381328e-01	ci left: 4.811443e-04	ci right 7.573092e-04	k: 79	n:130000
Cons ci ratio: 5.488000e-01	ci left: 2.854820e-04	ci right 5.070364e-04	k: 50	n:130000
KS ci ratio: 1.465407e-02	ci left: 3.524136e-01	ci right 3.576236e-01	k: 46152	n:130000
LYPLA1   130000 perm   29 sec   (4487 perm/sec)   p_kst 3.550154e-01   p_cons 3.846154e-04   p_joint 6.076923e-04

Joint ci ratio: 4.153856e-01	ci left: 5.041622e-04	ci right 7.743611e-04	k: 88	n:140000
Cons ci ratio: 5.017934e-01	ci left: 3.270606e-04	ci right 5.516224e-04	k: 60	n:140000
KS ci ratio: 1.412856e-02	ci left: 3.522647e-01	ci right 3.572842e-01	k: 49668	n:140000
LYPLA1   140000 perm   32 sec   (4416 perm/sec)   p_kst 3.547714e-01   p_cons 4.285714e-04   p_joint 6.285714e-04

Joint ci ratio: 4.041891e-01	ci left: 5.004483e-04	ci right 7.594889e-04	k: 93	n:150000
Cons ci ratio: 4.861092e-01	ci left: 3.286003e-04	ci right 5.448116e-04	k: 64	n:150000
KS ci ratio: 1.364666e-02	ci left: 3.524448e-01	ci right 3.572941e-01	k: 53230	n:150000
LYPLA1   150000 perm   35 sec   (4345 perm/sec)   p_kst 3.548667e-01   p_cons 4.266667e-04   p_joint 6.200000e-04

Joint ci ratio: 3.736277e-01	ci left: 5.594095e-04	ci right 8.217325e-04	k: 109	n:160000
Cons ci ratio: 4.651137e-01	ci left: 3.410681e-04	ci right 5.527231e-04	k: 70	n:160000
KS ci ratio: 1.319796e-02	ci left: 3.530542e-01	ci right 3.577510e-01	k: 56864	n:160000
LYPLA1   160000 perm   37 sec   (4273 perm/sec)   p_kst 3.554000e-01   p_cons 4.375000e-04   p_joint 6.812500e-04

Joint ci ratio: 3.577180e-01	ci left: 5.799251e-04	ci right 8.375967e-04	k: 119	n:170000
Cons ci ratio: 4.437495e-01	ci left: 3.574701e-04	ci right 5.660667e-04	k: 77	n:170000
KS ci ratio: 1.280522e-02	ci left: 3.530773e-01	ci right 3.576335e-01	k: 60410	n:170000
LYPLA1   170000 perm   40 sec   (4210 perm/sec)   p_kst 3.553529e-01   p_cons 4.529412e-04   p_joint 7.000000e-04

Joint ci ratio: 2.857453e-01	ci left: 8.953798e-04	ci right 1.198837e-03	k: 187	n:180000
Cons ci ratio: 4.381707e-01	ci left: 3.474874e-04	ci right 5.469569e-04	k: 79	n:180000
KS ci ratio: 1.243548e-02	ci left: 3.534714e-01	ci right 3.579000e-01	k: 64023	n:180000
LYPLA1   180000 perm   43 sec   (4147 perm/sec)   p_kst 3.556833e-01   p_cons 4.388889e-04   p_joint 1.038889e-03

Joint ci ratio: 3.638508e-01	ci left: 4.997319e-04	ci right 7.264827e-04	k: 115	n:190000
Cons ci ratio: 4.177755e-01	ci left: 3.667707e-04	ci right 5.647813e-04	k: 87	n:190000
KS ci ratio: 1.210643e-02	ci left: 3.534314e-01	ci right 3.577414e-01	k: 67561	n:190000
LYPLA1   190000 perm   46 sec   (4090 perm/sec)   p_kst 3.555842e-01   p_cons 4.578947e-04   p_joint 6.052632e-04

Joint ci ratio: 3.335766e-01	ci left: 5.751328e-04	ci right 8.097315e-04	k: 137	n:200000
Cons ci ratio: 4.085932e-01	ci left: 3.663529e-04	ci right 5.586102e-04	k: 91	n:200000
KS ci ratio: 1.180993e-02	ci left: 3.530972e-01	ci right 3.572970e-01	k: 71039	n:200000
LYPLA1   200000 perm   50 sec   (4032 perm/sec)   p_kst 3.551950e-01   p_cons 4.550000e-04   p_joint 6.850000e-04

Joint ci ratio: 3.436995e-01	ci left: 5.128859e-04	ci right 7.298559e-04	k: 129	n:210000
Cons ci ratio: 3.979228e-01	ci left: 3.703024e-04	ci right 5.582214e-04	k: 96	n:210000
KS ci ratio: 1.152519e-02	ci left: 3.531528e-01	ci right 3.572512e-01	k: 74592	n:210000
LYPLA1   210000 perm   53 sec   (3975 perm/sec)   p_kst 3.552000e-01   p_cons 4.571429e-04   p_joint 6.142857e-04

Joint ci ratio: 3.385325e-01	ci left: 5.061970e-04	ci right 7.164146e-04	k: 133	n:220000
Cons ci ratio: 3.958907e-01	ci left: 3.575617e-04	ci right 5.378456e-04	k: 97	n:220000
KS ci ratio: 1.126770e-02	ci left: 3.528957e-01	ci right 3.568990e-01	k: 78077	n:220000
LYPLA1   220000 perm   56 sec   (3920 perm/sec)   p_kst 3.548955e-01   p_cons 4.409091e-04   p_joint 6.045455e-04

Joint ci ratio: 3.323889e-01	ci left: 5.040966e-04	ci right 7.088298e-04	k: 138	n:230000
Cons ci ratio: 3.899681e-01	ci left: 3.537700e-04	ci right 5.287873e-04	k: 100	n:230000
KS ci ratio: 1.101396e-02	ci left: 3.531917e-01	ci right 3.571076e-01	k: 81684	n:230000
LYPLA1   230000 perm   59 sec   (3866 perm/sec)   p_kst 3.551478e-01   p_cons 4.347826e-04   p_joint 6.000000e-04

Joint ci ratio: 3.232164e-01	ci left: 5.136839e-04	ci right 7.153610e-04	k: 146	n:240000
Cons ci ratio: 3.806592e-01	ci left: 3.578452e-04	ci right 5.295960e-04	k: 105	n:240000
KS ci ratio: 1.078104e-02	ci left: 3.532767e-01	ci right 3.571101e-01	k: 85246	n:240000
LYPLA1   240000 perm   63 sec   (3814 perm/sec)   p_kst 3.551917e-01   p_cons 4.375000e-04   p_joint 6.083333e-04

Joint ci ratio: 3.199700e-01	ci left: 5.041676e-04	ci right 6.997126e-04	k: 149	n:250000
Cons ci ratio: 3.736744e-01	ci left: 3.580146e-04	ci right 5.259221e-04	k: 109	n:250000
KS ci ratio: 1.056561e-02	ci left: 3.532118e-01	ci right 3.569675e-01	k: 88772	n:250000
LYPLA1   250000 perm   66 sec   (3763 perm/sec)   p_kst 3.550880e-01   p_cons 4.360000e-04   p_joint 5.960000e-04

Joint ci ratio: 3.168193e-01	ci left: 4.953926e-04	ci right 6.852587e-04	k: 152	n:260000
Cons ci ratio: 3.686817e-01	ci left: 3.547069e-04	ci right 5.183046e-04	k: 112	n:260000
KS ci ratio: 1.035886e-02	ci left: 3.533179e-01	ci right 3.570007e-01	k: 92341	n:260000
LYPLA1   260000 perm   70 sec   (3713 perm/sec)   p_kst 3.551577e-01   p_cons 4.307692e-04   p_joint 5.846154e-04

Joint ci ratio: 1.920453e-01	ci left: 1.392794e-03	ci right 1.692143e-03	k: 415	n:270000
Cons ci ratio: 3.623249e-01	ci left: 3.550239e-04	ci right 5.152777e-04	k: 116	n:270000
KS ci ratio: 1.016864e-02	ci left: 3.531985e-01	ci right 3.568120e-01	k: 95851	n:270000
LYPLA1   270000 perm   74 sec   (3663 perm/sec)   p_kst 3.550037e-01   p_cons 4.296296e-04   p_joint 1.537037e-03

Joint ci ratio: 1.886740e-01	ci left: 1.394070e-03	ci right 1.687831e-03	k: 430	n:280000
Cons ci ratio: 3.592688e-01	ci left: 3.488396e-04	ci right 5.046630e-04	k: 118	n:280000
KS ci ratio: 9.984868e-03	ci left: 3.532559e-01	ci right 3.568043e-01	k: 99408	n:280000
LYPLA1   280000 perm   77 sec   (3614 perm/sec)   p_kst 3.550286e-01   p_cons 4.214286e-04   p_joint 1.535714e-03

Joint ci ratio: 2.996810e-01	ci left: 5.014174e-04	ci right 6.812210e-04	k: 170	n:290000
Cons ci ratio: 3.491449e-01	ci left: 3.588017e-04	ci right 5.135369e-04	k: 125	n:290000
KS ci ratio: 9.811893e-03	ci left: 3.532547e-01	ci right 3.567413e-01	k: 102949	n:290000
LYPLA1   290000 perm   81 sec   (3558 perm/sec)   p_kst 3.549966e-01   p_cons 4.310345e-04   p_joint 5.862069e-04

Joint ci ratio: 2.953939e-01	ci left: 5.001262e-04	ci right 6.764208e-04	k: 175	n:300000
Cons ci ratio: 3.437317e-01	ci left: 3.590149e-04	ci right 5.109080e-04	k: 129	n:300000
KS ci ratio: 9.649715e-03	ci left: 3.531542e-01	ci right 3.565819e-01	k: 106460	n:300000
LYPLA1   300000 perm   85 sec   (3516 perm/sec)   p_kst 3.548667e-01   p_cons 4.300000e-04   p_joint 5.833333e-04

Joint ci ratio: 2.920942e-01	ci left: 4.959455e-04	ci right 6.684523e-04	k: 179	n:310000
Cons ci ratio: 3.373059e-01	ci left: 3.621839e-04	ci right 5.119299e-04	k: 134	n:310000
KS ci ratio: 9.495588e-03	ci left: 3.530478e-01	ci right 3.564194e-01	k: 109967	n:310000
LYPLA1   310000 perm   89 sec   (3472 perm/sec)   p_kst 3.547323e-01   p_cons 4.322581e-04   p_joint 5.774194e-04

Joint ci ratio: 2.881204e-01	ci left: 4.949353e-04	ci right 6.643220e-04	k: 184	n:320000
Cons ci ratio: 3.288856e-01	ci left: 3.709119e-04	ci right 5.196292e-04	k: 141	n:320000
KS ci ratio: 9.343896e-03	ci left: 3.531795e-01	ci right 3.564981e-01	k: 113548	n:320000
LYPLA1   320000 perm   93 sec   (3430 perm/sec)   p_kst 3.548375e-01   p_cons 4.406250e-04   p_joint 5.750000e-04

Joint ci ratio: 2.367172e-01	ci left: 7.320743e-04	ci right 9.314051e-04	k: 273	n:330000
Cons ci ratio: 3.254663e-01	ci left: 3.680163e-04	ci right 5.137180e-04	k: 144	n:330000
KS ci ratio: 9.201014e-03	ci left: 3.532158e-01	ci right 3.564837e-01	k: 117100	n:330000
LYPLA1   330000 perm   97 sec   (3389 perm/sec)   p_kst 3.548485e-01   p_cons 4.363636e-04   p_joint 8.272727e-04

Joint ci ratio: 2.799189e-01	ci left: 4.958706e-04	ci right 6.598951e-04	k: 195	n:340000
Cons ci ratio: 3.232458e-01	ci left: 3.625956e-04	ci right 5.049686e-04	k: 146	n:340000
KS ci ratio: 9.061930e-03	ci left: 3.533796e-01	ci right 3.565994e-01	k: 120696	n:340000
LYPLA1   340000 perm   102 sec   (3349 perm/sec)   p_kst 3.549882e-01   p_cons 4.294118e-04   p_joint 5.735294e-04

Joint ci ratio: 2.764157e-01	ci left: 4.949922e-04	ci right 6.563206e-04	k: 200	n:350000
Cons ci ratio: 3.168435e-01	ci left: 3.680019e-04	ci right 5.090559e-04	k: 152	n:350000
KS ci ratio: 8.932701e-03	ci left: 3.533431e-01	ci right 3.565164e-01	k: 124225	n:350000
LYPLA1   350000 perm   106 sec   (3310 perm/sec)   p_kst 3.549286e-01   p_cons 4.342857e-04   p_joint 5.714286e-04

Joint ci ratio: 2.730408e-01	ci left: 4.941746e-04	ci right 6.529328e-04	k: 205	n:360000
Cons ci ratio: 3.117896e-01	ci left: 3.705731e-04	ci right 5.098962e-04	k: 157	n:360000
KS ci ratio: 8.810291e-03	ci left: 3.532341e-01	ci right 3.563627e-01	k: 127727	n:360000
LYPLA1   360000 perm   110 sec   (3267 perm/sec)   p_kst 3.547972e-01   p_cons 4.361111e-04   p_joint 5.694444e-04

Joint ci ratio: 2.704286e-01	ci left: 4.908927e-04	ci right 6.468317e-04	k: 209	n:370000
Cons ci ratio: 3.088716e-01	ci left: 3.680343e-04	ci right 5.048529e-04	k: 160	n:370000
KS ci ratio: 8.695858e-03	ci left: 3.529692e-01	ci right 3.560547e-01	k: 131169	n:370000
LYPLA1   370000 perm   115 sec   (3228 perm/sec)   p_kst 3.545108e-01   p_cons 4.324324e-04   p_joint 5.648649e-04

Joint ci ratio: 2.678899e-01	ci left: 4.877905e-04	ci right 6.410449e-04	k: 213	n:380000
Cons ci ratio: 3.079182e-01	ci left: 3.607770e-04	ci right 4.944023e-04	k: 161	n:380000
KS ci ratio: 8.582805e-03	ci left: 3.528763e-01	ci right 3.559206e-01	k: 134671	n:380000
LYPLA1   380000 perm   119 sec   (3191 perm/sec)   p_kst 3.543974e-01   p_cons 4.236842e-04   p_joint 5.605263e-04

Joint ci ratio: 2.648143e-01	ci left: 4.872475e-04	ci right 6.382825e-04	k: 218	n:390000
Cons ci ratio: 3.014727e-01	ci left: 3.681033e-04	ci right 5.010415e-04	k: 168	n:390000
KS ci ratio: 8.474476e-03	ci left: 3.527654e-01	ci right 3.557701e-01	k: 138164	n:390000
LYPLA1   390000 perm   124 sec   (3154 perm/sec)   p_kst 3.542667e-01   p_cons 4.307692e-04   p_joint 5.589744e-04

Joint ci ratio: 2.624291e-01	ci left: 4.844054e-04	ci right 6.329849e-04	k: 222	n:400000
Cons ci ratio: 2.971094e-01	ci left: 3.704623e-04	ci right 5.019512e-04	k: 173	n:400000
KS ci ratio: 8.369232e-03	ci left: 3.527102e-01	ci right 3.556769e-01	k: 141677	n:400000
LYPLA1   400000 perm   128 sec   (3119 perm/sec)   p_kst 3.541925e-01   p_cons 4.325000e-04   p_joint 5.550000e-04

Joint ci ratio: 2.589682e-01	ci left: 4.862686e-04	ci right 6.331345e-04	k: 228	n:410000
Cons ci ratio: 2.929302e-01	ci left: 3.727194e-04	ci right 5.028034e-04	k: 178	n:410000
KS ci ratio: 8.264906e-03	ci left: 3.528187e-01	ci right 3.557492e-01	k: 145256	n:410000
LYPLA1   410000 perm   133 sec   (3085 perm/sec)   p_kst 3.542829e-01   p_cons 4.341463e-04   p_joint 5.560976e-04

Joint ci ratio: 2.529623e-01	ci left: 4.992018e-04	ci right 6.459261e-04	k: 239	n:420000
Cons ci ratio: 2.905064e-01	ci left: 3.704653e-04	ci right 4.984960e-04	k: 181	n:420000
KS ci ratio: 8.166850e-03	ci left: 3.527843e-01	ci right 3.556796e-01	k: 148777	n:420000
LYPLA1   420000 perm   138 sec   (3052 perm/sec)   p_kst 3.542310e-01   p_cons 4.309524e-04   p_joint 5.690476e-04

Joint ci ratio: 2.493517e-01	ci left: 5.028471e-04	ci right 6.482060e-04	k: 246	n:430000
Cons ci ratio: 2.865961e-01	ci left: 3.726364e-04	ci right 4.993701e-04	k: 186	n:430000
KS ci ratio: 8.074378e-03	ci left: 3.526286e-01	ci right 3.554897e-01	k: 152245	n:430000
LYPLA1   430000 perm   142 sec   (3019 perm/sec)   p_kst 3.540581e-01   p_cons 4.325581e-04   p_joint 5.720930e-04

Joint ci ratio: 2.473573e-01	ci left: 4.999438e-04	ci right 6.431298e-04	k: 250	n:440000
Cons ci ratio: 2.828396e-01	ci left: 3.747198e-04	ci right 5.001936e-04	k: 191	n:440000
KS ci ratio: 7.983549e-03	ci left: 3.525619e-01	ci right 3.553901e-01	k: 155749	n:440000
LYPLA1   440000 perm   147 sec   (2986 perm/sec)   p_kst 3.539750e-01   p_cons 4.340909e-04   p_joint 5.681818e-04

Joint ci ratio: 2.439783e-01	ci left: 5.034320e-04	ci right 6.453491e-04	k: 257	n:450000
Cons ci ratio: 2.778197e-01	ci left: 3.808550e-04	ci right 5.057241e-04	k: 198	n:450000
KS ci ratio: 7.891613e-03	ci left: 3.527358e-01	ci right 3.555327e-01	k: 159360	n:450000
LYPLA1   450000 perm   153 sec   (2950 perm/sec)   p_kst 3.541333e-01   p_cons 4.400000e-04   p_joint 5.711111e-04

Joint ci ratio: 2.416482e-01	ci left: 5.026961e-04	ci right 6.428494e-04	k: 262	n:460000
Cons ci ratio: 2.757494e-01	ci left: 3.786446e-04	ci right 5.017034e-04	k: 201	n:460000
KS ci ratio: 7.802039e-03	ci left: 3.529459e-01	ci right 3.557125e-01	k: 162991	n:460000
LYPLA1   460000 perm   158 sec   (2920 perm/sec)   p_kst 3.543283e-01   p_cons 4.369565e-04   p_joint 5.695652e-04

Joint ci ratio: 2.398317e-01	ci left: 4.999976e-04	ci right 6.381949e-04	k: 266	n:470000
Cons ci ratio: 2.737247e-01	ci left: 3.765316e-04	ci right 4.978506e-04	k: 204	n:470000
KS ci ratio: 7.718962e-03	ci left: 3.529388e-01	ci right 3.556758e-01	k: 166524	n:470000
LYPLA1   470000 perm   163 sec   (2890 perm/sec)   p_kst 3.543064e-01   p_cons 4.340426e-04   p_joint 5.659574e-04

Joint ci ratio: 2.389394e-01	ci left: 4.934976e-04	ci right 6.293156e-04	k: 268	n:480000
Cons ci ratio: 2.737259e-01	ci left: 3.686870e-04	ci right 4.874790e-04	k: 204	n:480000
KS ci ratio: 7.641685e-03	ci left: 3.527407e-01	ci right 3.554486e-01	k: 169965	n:480000
LYPLA1   480000 perm   168 sec   (2861 perm/sec)   p_kst 3.540937e-01   p_cons 4.250000e-04   p_joint 5.583333e-04

Joint ci ratio: 2.354632e-01	ci left: 4.987827e-04	ci right 6.337672e-04	k: 276	n:490000
Cons ci ratio: 2.698055e-01	ci left: 3.725735e-04	ci right 4.906075e-04	k: 210	n:490000
KS ci ratio: 7.561686e-03	ci left: 3.528526e-01	ci right 3.555328e-01	k: 173554	n:490000
LYPLA1   490000 perm   173 sec   (2833 perm/sec)   p_kst 3.541918e-01   p_cons 4.285714e-04   p_joint 5.632653e-04

Joint ci ratio: 2.317279e-01	ci left: 5.057539e-04	ci right 6.401430e-04	k: 285	n:500000
Cons ci ratio: 2.672840e-01	ci left: 3.725835e-04	ci right 4.893327e-04	k: 214	n:500000
KS ci ratio: 7.488893e-03	ci left: 3.526703e-01	ci right 3.553233e-01	k: 176998	n:500000
LYPLA1   500000 perm   178 sec   (2805 perm/sec)   p_kst 3.539960e-01   p_cons 4.280000e-04   p_joint 5.700000e-04

Joint ci ratio: 2.285529e-01	ci left: 5.106193e-04	ci right 6.441801e-04	k: 293	n:510000
Cons ci ratio: 2.642291e-01	ci left: 3.744288e-04	ci right 4.901934e-04	k: 219	n:510000
KS ci ratio: 7.414854e-03	ci left: 3.526992e-01	ci right 3.553260e-01	k: 180546	n:510000
LYPLA1   510000 perm   184 sec   (2778 perm/sec)   p_kst 3.540118e-01   p_cons 4.294118e-04   p_joint 5.745098e-04

Joint ci ratio: 2.273963e-01	ci left: 5.062393e-04	ci right 6.378903e-04	k: 296	n:520000
Cons ci ratio: 2.618593e-01	ci left: 3.744134e-04	ci right 4.889650e-04	k: 223	n:520000
KS ci ratio: 7.344142e-03	ci left: 3.526540e-01	ci right 3.552553e-01	k: 184056	n:520000
LYPLA1   520000 perm   189 sec   (2750 perm/sec)   p_kst 3.539538e-01   p_cons 4.288462e-04   p_joint 5.692308e-04

Joint ci ratio: 2.266353e-01	ci left: 5.002465e-04	ci right 6.298427e-04	k: 298	n:530000
Cons ci ratio: 2.595523e-01	ci left: 3.744030e-04	ci right 4.877785e-04	k: 227	n:530000
KS ci ratio: 7.275085e-03	ci left: 3.526313e-01	ci right 3.552080e-01	k: 187577	n:530000
LYPLA1   530000 perm   195 sec   (2724 perm/sec)   p_kst 3.539189e-01   p_cons 4.283019e-04   p_joint 5.622642e-04

Joint ci ratio: 2.243949e-01	ci left: 5.014662e-04	ci right 6.299167e-04	k: 304	n:540000
Cons ci ratio: 2.551143e-01	ci left: 3.813292e-04	ci right 4.945135e-04	k: 235	n:540000
KS ci ratio: 7.209282e-03	ci left: 3.525246e-01	ci right 3.550770e-01	k: 191052	n:540000
LYPLA1   540000 perm   200 sec   (2698 perm/sec)   p_kst 3.538000e-01   p_cons 4.351852e-04   p_joint 5.629630e-04

Joint ci ratio: 2.305274e-01	ci left: 4.649139e-04	ci right 5.877197e-04	k: 288	n:550000
Cons ci ratio: 2.529795e-01	ci left: 3.812056e-04	ci right 4.932572e-04	k: 239	n:550000
KS ci ratio: 7.179920e-03	ci left: 3.502127e-01	ci right 3.527380e-01	k: 193311	n:550000
LYPLA1   550000 perm   206 sec   (2672 perm/sec)   p_kst 3.514745e-01   p_cons 4.345455e-04   p_joint 5.236364e-04

Joint ci ratio: 2.289487e-01	ci left: 4.633436e-04	ci right 5.847780e-04	k: 292	n:560000
Cons ci ratio: 2.519325e-01	ci left: 3.777437e-04	ci right 4.882461e-04	k: 241	n:560000
KS ci ratio: 7.116076e-03	ci left: 3.501887e-01	ci right 3.526914e-01	k: 196806	n:560000
LYPLA1   560000 perm   212 sec   (2647 perm/sec)   p_kst 3.514393e-01   p_cons 4.303571e-04   p_joint 5.214286e-04

Joint ci ratio: 2.277860e-01	ci left: 4.601767e-04	ci right 5.800826e-04	k: 295	n:570000
Cons ci ratio: 2.503856e-01	ci left: 3.760485e-04	ci right 4.852742e-04	k: 244	n:570000
KS ci ratio: 7.054040e-03	ci left: 3.501570e-01	ci right 3.526375e-01	k: 200296	n:570000
LYPLA1   570000 perm   217 sec   (2622 perm/sec)   p_kst 3.513965e-01   p_cons 4.280702e-04   p_joint 5.175439e-04

Joint ci ratio: 2.262626e-01	ci left: 4.587470e-04	ci right 5.773693e-04	k: 299	n:580000
Cons ci ratio: 2.488668e-01	ci left: 3.744137e-04	ci right 4.824028e-04	k: 247	n:580000
KS ci ratio: 6.991034e-03	ci left: 3.502936e-01	ci right 3.527527e-01	k: 203883	n:580000
LYPLA1   580000 perm   223 sec   (2597 perm/sec)   p_kst 3.515224e-01   p_cons 4.258621e-04   p_joint 5.155172e-04

Joint ci ratio: 2.412051e-01	ci left: 3.935222e-04	ci right 5.030059e-04	k: 263	n:590000
Cons ci ratio: 2.473754e-01	ci left: 3.728363e-04	ci right 4.796268e-04	k: 250	n:590000
KS ci ratio: 6.931412e-03	ci left: 3.503121e-01	ci right 3.527504e-01	k: 207403	n:590000
LYPLA1   590000 perm   229 sec   (2573 perm/sec)   p_kst 3.515305e-01   p_cons 4.237288e-04   p_joint 4.457627e-04

Joint ci ratio: 2.229434e-01	ci left: 4.576115e-04	ci right 5.739662e-04	k: 308	n:600000
Cons ci ratio: 2.444703e-01	ci left: 3.760062e-04	ci right 4.822479e-04	k: 256	n:600000
KS ci ratio: 6.872939e-03	ci left: 3.503534e-01	ci right 3.527713e-01	k: 210937	n:600000
LYPLA1   600000 perm   235 sec   (2549 perm/sec)   p_kst 3.515617e-01   p_cons 4.266667e-04   p_joint 5.133333e-04

Joint ci ratio: 2.398474e-01	ci left: 3.852413e-04	ci right 4.917280e-04	k: 266	n:610000
Cons ci ratio: 2.435250e-01	ci left: 3.729203e-04	ci right 4.778211e-04	k: 258	n:610000
KS ci ratio: 6.816704e-03	ci left: 3.503411e-01	ci right 3.527390e-01	k: 214439	n:610000
LYPLA1   610000 perm   242 sec   (2525 perm/sec)   p_kst 3.515393e-01   p_cons 4.229508e-04   p_joint 4.360656e-04

Joint ci ratio: 2.367633e-01	ci left: 3.896441e-04	ci right 4.957600e-04	k: 273	n:620000
Cons ci ratio: 2.394002e-01	ci left: 3.805436e-04	ci right 4.855067e-04	k: 267	n:620000
KS ci ratio: 6.760154e-03	ci left: 3.504420e-01	ci right 3.528207e-01	k: 218011	n:620000
LYPLA1   620000 perm   248 sec   (2499 perm/sec)   p_kst 3.516306e-01   p_cons 4.306452e-04   p_joint 4.403226e-04

Joint ci ratio: 2.350539e-01	ci left: 3.894332e-04	ci right 4.946146e-04	k: 277	n:630000
Cons ci ratio: 2.376334e-01	ci left: 3.804731e-04	ci right 4.845282e-04	k: 271	n:630000
KS ci ratio: 6.708490e-03	ci left: 3.503019e-01	ci right 3.526614e-01	k: 221433	n:630000
LYPLA1   630000 perm   255 sec   (2475 perm/sec)   p_kst 3.514810e-01   p_cons 4.301587e-04   p_joint 4.396825e-04

Joint ci ratio: 2.329681e-01	ci left: 3.907028e-04	ci right 4.951559e-04	k: 282	n:640000
Cons ci ratio: 2.363339e-01	ci left: 3.789373e-04	ci right 4.819228e-04	k: 274	n:640000
KS ci ratio: 6.655892e-03	ci left: 3.503099e-01	ci right 3.526508e-01	k: 224947	n:640000
LYPLA1   640000 perm   261 sec   (2453 perm/sec)   p_kst 3.514797e-01   p_cons 4.281250e-04   p_joint 4.406250e-04

Joint ci ratio: 2.301388e-01	ci left: 3.948367e-04	ci right 4.989308e-04	k: 289	n:650000
Cons ci ratio: 2.350555e-01	ci left: 3.774503e-04	ci right 4.793961e-04	k: 277	n:650000
KS ci ratio: 6.604513e-03	ci left: 3.503177e-01	ci right 3.526405e-01	k: 228461	n:650000
LYPLA1   650000 perm   267 sec   (2433 perm/sec)   p_kst 3.514785e-01   p_cons 4.261538e-04   p_joint 4.446154e-04

Joint ci ratio: 2.297436e-01	ci left: 3.902821e-04	ci right 4.929736e-04	k: 290	n:660000
Cons ci ratio: 2.346345e-01	ci left: 3.731573e-04	ci right 4.737368e-04	k: 278	n:660000
KS ci ratio: 6.554022e-03	ci left: 3.503450e-01	ci right 3.526502e-01	k: 231988	n:660000
LYPLA1   660000 perm   274 sec   (2412 perm/sec)   p_kst 3.514970e-01   p_cons 4.212121e-04   p_joint 4.393939e-04

Joint ci ratio: 2.277949e-01	ci left: 3.914920e-04	ci right 4.935054e-04	k: 295	n:670000
Cons ci ratio: 2.321512e-01	ci left: 3.760195e-04	ci right 4.761439e-04	k: 284	n:670000
KS ci ratio: 6.503884e-03	ci left: 3.504268e-01	ci right 3.527148e-01	k: 235552	n:670000
LYPLA1   670000 perm   280 sec   (2392 perm/sec)   p_kst 3.515701e-01   p_cons 4.238806e-04   p_joint 4.402985e-04

Joint ci ratio: 2.262712e-01	ci left: 3.912826e-04	ci right 4.924643e-04	k: 299	n:680000
Cons ci ratio: 2.309391e-01	ci left: 3.746456e-04	ci right 4.738090e-04	k: 287	n:680000
KS ci ratio: 6.456961e-03	ci left: 3.503592e-01	ci right 3.526303e-01	k: 239016	n:680000
LYPLA1   680000 perm   287 sec   (2372 perm/sec)   p_kst 3.514941e-01   p_cons 4.220588e-04   p_joint 4.397059e-04

Joint ci ratio: 2.255211e-01	ci left: 3.883463e-04	ci right 4.883896e-04	k: 301	n:690000
Cons ci ratio: 2.301418e-01	ci left: 3.719471e-04	ci right 4.700080e-04	k: 289	n:690000
KS ci ratio: 6.410468e-03	ci left: 3.503343e-01	ci right 3.525887e-01	k: 242508	n:690000
LYPLA1   690000 perm   293 sec   (2353 perm/sec)   p_kst 3.514609e-01   p_cons 4.188406e-04   p_joint 4.362319e-04

Joint ci ratio: 2.244095e-01	ci left: 3.868427e-04	ci right 4.859394e-04	k: 304	n:700000
Cons ci ratio: 2.274130e-01	ci left: 3.760606e-04	ci right 4.738656e-04	k: 296	n:700000
KS ci ratio: 6.362832e-03	ci left: 3.504628e-01	ci right 3.527013e-01	k: 246107	n:700000
LYPLA1   700000 perm   300 sec   (2334 perm/sec)   p_kst 3.515814e-01   p_cons 4.228571e-04   p_joint 4.342857e-04

Joint ci ratio: 2.233141e-01	ci left: 3.853826e-04	ci right 4.835572e-04	k: 307	n:710000
Cons ci ratio: 2.262733e-01	ci left: 3.747492e-04	ci right 4.716565e-04	k: 299	n:710000
KS ci ratio: 6.317549e-03	ci left: 3.504935e-01	ci right 3.527162e-01	k: 249639	n:710000
LYPLA1   710000 perm   307 sec   (2315 perm/sec)   p_kst 3.516042e-01   p_cons 4.211268e-04   p_joint 4.323944e-04

Joint ci ratio: 2.211700e-01	ci left: 3.878996e-04	ci right 4.856375e-04	k: 313	n:720000
Cons ci ratio: 2.244108e-01	ci left: 3.760968e-04	ci right 4.724415e-04	k: 304	n:720000
KS ci ratio: 6.272245e-03	ci left: 3.505942e-01	ci right 3.528015e-01	k: 253222	n:720000
LYPLA1   720000 perm   314 sec   (2297 perm/sec)   p_kst 3.516972e-01   p_cons 4.222222e-04   p_joint 4.347222e-04

Joint ci ratio: 2.197746e-01	ci left: 3.877628e-04	ci right 4.847665e-04	k: 317	n:730000
Cons ci ratio: 2.229537e-01	ci left: 3.761173e-04	ci right 4.717556e-04	k: 308	n:730000
KS ci ratio: 6.228537e-03	ci left: 3.506456e-01	ci right 3.528378e-01	k: 256771	n:730000
LYPLA1   730000 perm   320 sec   (2278 perm/sec)   p_kst 3.517411e-01   p_cons 4.219178e-04   p_joint 4.342466e-04

Joint ci ratio: 2.184054e-01	ci left: 3.876315e-04	ci right 4.839171e-04	k: 321	n:740000
Cons ci ratio: 2.222359e-01	ci left: 3.735866e-04	ci right 4.682338e-04	k: 310	n:740000
KS ci ratio: 6.187509e-03	ci left: 3.505647e-01	ci right 3.527419e-01	k: 260223	n:740000
LYPLA1   740000 perm   327 sec   (2261 perm/sec)   p_kst 3.516527e-01   p_cons 4.189189e-04   p_joint 4.337838e-04

Joint ci ratio: 2.157413e-01	ci left: 3.925500e-04	ci right 4.887104e-04	k: 329	n:750000
Cons ci ratio: 2.204706e-01	ci left: 3.749025e-04	ci right 4.690263e-04	k: 315	n:750000
KS ci ratio: 6.146130e-03	ci left: 3.505713e-01	ci right 3.527339e-01	k: 263739	n:750000
LYPLA1   750000 perm   334 sec   (2243 perm/sec)   p_kst 3.516520e-01   p_cons 4.200000e-04   p_joint 4.386667e-04

Joint ci ratio: 2.141251e-01	ci left: 3.936097e-04	ci right 4.892126e-04	k: 334	n:760000
Cons ci ratio: 2.197765e-01	ci left: 3.724560e-04	ci right 4.656314e-04	k: 317	n:760000
KS ci ratio: 6.106134e-03	ci left: 3.505357e-01	ci right 3.526839e-01	k: 267223	n:760000
LYPLA1   760000 perm   341 sec   (2226 perm/sec)   p_kst 3.516092e-01   p_cons 4.171053e-04   p_joint 4.394737e-04

Joint ci ratio: 2.128582e-01	ci left: 3.934149e-04	ci right 4.883313e-04	k: 338	n:770000
Cons ci ratio: 2.187473e-01	ci left: 3.713010e-04	ci right 4.636940e-04	k: 320	n:770000
KS ci ratio: 6.066771e-03	ci left: 3.505114e-01	ci right 3.526456e-01	k: 270715	n:770000
LYPLA1   770000 perm   349 sec   (2209 perm/sec)   p_kst 3.515779e-01   p_cons 4.155844e-04   p_joint 4.389610e-04

Joint ci ratio: 2.116134e-01	ci left: 3.932268e-04	ci right 4.874710e-04	k: 342	n:780000
Cons ci ratio: 2.167309e-01	ci left: 3.738136e-04	ci right 4.658603e-04	k: 326	n:780000
KS ci ratio: 6.028024e-03	ci left: 3.504980e-01	ci right 3.526185e-01	k: 274215	n:780000
LYPLA1   780000 perm   356 sec   (2192 perm/sec)   p_kst 3.515577e-01   p_cons 4.179487e-04   p_joint 4.384615e-04

Joint ci ratio: 2.100876e-01	ci left: 3.942442e-04	ci right 4.879633e-04	k: 347	n:790000
Cons ci ratio: 2.150926e-01	ci left: 3.750687e-04	ci right 4.666341e-04	k: 331	n:790000
KS ci ratio: 5.991290e-03	ci left: 3.503876e-01	ci right 3.524945e-01	k: 277638	n:790000
LYPLA1   790000 perm   363 sec   (2175 perm/sec)   p_kst 3.514405e-01   p_cons 4.189873e-04   p_joint 4.392405e-04

Joint ci ratio: 2.080057e-01	ci left: 3.976082e-04	ci right 4.910711e-04	k: 354	n:800000
Cons ci ratio: 2.134909e-01	ci left: 3.762950e-04	ci right 4.673861e-04	k: 336	n:800000
KS ci ratio: 5.955415e-03	ci left: 3.502651e-01	ci right 3.523585e-01	k: 281049	n:800000
LYPLA1   800000 perm   371 sec   (2158 perm/sec)   p_kst 3.513113e-01   p_cons 4.200000e-04   p_joint 4.425000e-04

Joint ci ratio: 2.065561e-01	ci left: 3.985519e-04	ci right 4.915012e-04	k: 359	n:810000
Cons ci ratio: 2.113072e-01	ci left: 3.798317e-04	ci right 4.707168e-04	k: 343	n:810000
KS ci ratio: 5.916650e-03	ci left: 3.504170e-01	ci right 3.524976e-01	k: 284680	n:810000
LYPLA1   810000 perm   378 sec   (2142 perm/sec)   p_kst 3.514568e-01   p_cons 4.234568e-04   p_joint 4.432099e-04

Joint ci ratio: 2.054181e-01	ci left: 3.983179e-04	ci right 4.906366e-04	k: 363	n:820000
Cons ci ratio: 2.097880e-01	ci left: 3.809757e-04	ci right 4.713949e-04	k: 348	n:820000
KS ci ratio: 5.880283e-03	ci left: 3.504373e-01	ci right 3.525052e-01	k: 288206	n:820000
LYPLA1   820000 perm   386 sec   (2126 perm/sec)   p_kst 3.514707e-01   p_cons 4.243902e-04   p_joint 4.426829e-04

Joint ci ratio: 2.037455e-01	ci left: 4.003776e-04	ci right 4.923240e-04	k: 369	n:830000
Cons ci ratio: 2.085960e-01	ci left: 3.809525e-04	ci right 4.707868e-04	k: 352	n:830000
KS ci ratio: 5.844300e-03	ci left: 3.504788e-01	ci right 3.525343e-01	k: 291750	n:830000
LYPLA1   830000 perm   393 sec   (2110 perm/sec)   p_kst 3.515060e-01   p_cons 4.240964e-04   p_joint 4.445783e-04

Joint ci ratio: 2.023826e-01	ci left: 4.012609e-04	ci right 4.927176e-04	k: 374	n:840000
Cons ci ratio: 2.077154e-01	ci left: 3.798026e-04	ci right 4.689396e-04	k: 355	n:840000
KS ci ratio: 5.808909e-03	ci left: 3.505241e-01	ci right 3.525674e-01	k: 295298	n:840000
LYPLA1   840000 perm   401 sec   (2095 perm/sec)   p_kst 3.515452e-01   p_cons 4.226190e-04   p_joint 4.452381e-04

Joint ci ratio: 2.007826e-01	ci left: 4.032428e-04	ci right 4.943355e-04	k: 380	n:850000
Cons ci ratio: 2.065583e-01	ci left: 3.797961e-04	ci right 4.683723e-04	k: 359	n:850000
KS ci ratio: 5.776224e-03	ci left: 3.504050e-01	ci right 3.524360e-01	k: 298707	n:850000
LYPLA1   850000 perm   409 sec   (2080 perm/sec)   p_kst 3.514200e-01   p_cons 4.223529e-04   p_joint 4.470588e-04

Joint ci ratio: 1.994778e-01	ci left: 4.040766e-04	ci right 4.946923e-04	k: 385	n:860000
Cons ci ratio: 2.059871e-01	ci left: 3.775853e-04	ci right 4.653717e-04	k: 361	n:860000
KS ci ratio: 5.743074e-03	ci left: 3.503688e-01	ci right 3.523880e-01	k: 302185	n:860000
LYPLA1   860000 perm   416 sec   (2065 perm/sec)   p_kst 3.513779e-01   p_cons 4.197674e-04   p_joint 4.476744e-04

Joint ci ratio: 1.984523e-01	ci left: 4.038007e-04	ci right 4.938327e-04	k: 389	n:870000
Cons ci ratio: 2.051390e-01	ci left: 3.765160e-04	ci right 4.636482e-04	k: 364	n:870000
KS ci ratio: 5.710156e-03	ci left: 3.503600e-01	ci right 3.523674e-01	k: 305686	n:870000
LYPLA1   870000 perm   424 sec   (2051 perm/sec)   p_kst 3.513632e-01   p_cons 4.183908e-04   p_joint 4.471264e-04

Joint ci ratio: 1.979457e-01	ci left: 4.013719e-04	ci right 4.906064e-04	k: 391	n:880000
Cons ci ratio: 2.037481e-01	ci left: 3.776284e-04	ci right 4.643517e-04	k: 369	n:880000
KS ci ratio: 5.677289e-03	ci left: 3.503922e-01	ci right 3.523883e-01	k: 309223	n:880000
LYPLA1   880000 perm   432 sec   (2036 perm/sec)   p_kst 3.513898e-01   p_cons 4.193182e-04   p_joint 4.443182e-04

Joint ci ratio: 1.962014e-01	ci left: 4.043393e-04	ci right 4.933466e-04	k: 398	n:890000
Cons ci ratio: 2.018474e-01	ci left: 3.808512e-04	ci right 4.673982e-04	k: 376	n:890000
KS ci ratio: 5.646625e-03	ci left: 3.502913e-01	ci right 3.522760e-01	k: 312642	n:890000
LYPLA1   890000 perm   440 sec   (2022 perm/sec)   p_kst 3.512831e-01   p_cons 4.224719e-04   p_joint 4.471910e-04

Joint ci ratio: 1.954681e-01	ci left: 4.030165e-04	ci right 4.913616e-04	k: 401	n:900000
Cons ci ratio: 2.010492e-01	ci left: 3.797847e-04	ci right 4.657062e-04	k: 379	n:900000
KS ci ratio: 5.614905e-03	ci left: 3.503181e-01	ci right 3.522917e-01	k: 316174	n:900000
LYPLA1   900000 perm   448 sec   (2008 perm/sec)   p_kst 3.513044e-01   p_cons 4.211111e-04   p_joint 4.455556e-04

Joint ci ratio: 1.942636e-01	ci left: 4.038142e-04	ci right 4.917242e-04	k: 406	n:910000
Cons ci ratio: 1.994803e-01	ci left: 3.818741e-04	ci right 4.675120e-04	k: 385	n:910000
KS ci ratio: 5.583633e-03	ci left: 3.503510e-01	ci right 3.523137e-01	k: 319712	n:910000
LYPLA1   910000 perm   456 sec   (1994 perm/sec)   p_kst 3.513319e-01   p_cons 4.230769e-04   p_joint 4.461538e-04

Joint ci ratio: 1.926140e-01	ci left: 4.066652e-04	ci right 4.943561e-04	k: 413	n:920000
Cons ci ratio: 1.966966e-01	ci left: 3.890870e-04	ci right 4.749789e-04	k: 396	n:920000
KS ci ratio: 5.553023e-03	ci left: 3.503712e-01	ci right 3.523233e-01	k: 323239	n:920000
LYPLA1   920000 perm   464 sec   (1981 perm/sec)   p_kst 3.513467e-01   p_cons 4.304348e-04   p_joint 4.489130e-04

Joint ci ratio: 1.919201e-01	ci left: 4.053630e-04	ci right 4.924213e-04	k: 416	n:930000
Cons ci ratio: 1.959577e-01	ci left: 3.879705e-04	ci right 4.732558e-04	k: 399	n:930000
KS ci ratio: 5.522351e-03	ci left: 3.504372e-01	ci right 3.523788e-01	k: 326809	n:930000
LYPLA1   930000 perm   473 sec   (1967 perm/sec)   p_kst 3.514075e-01   p_cons 4.290323e-04   p_joint 4.473118e-04

Joint ci ratio: 1.912336e-01	ci left: 4.040890e-04	ci right 4.905272e-04	k: 419	n:940000
Cons ci ratio: 1.945042e-01	ci left: 3.899142e-04	ci right 4.749157e-04	k: 405	n:940000
KS ci ratio: 5.491925e-03	ci left: 3.505231e-01	ci right 3.524544e-01	k: 330399	n:940000
LYPLA1   940000 perm   481 sec   (1953 perm/sec)   p_kst 3.514883e-01   p_cons 4.308511e-04   p_joint 4.457447e-04

Joint ci ratio: 1.901053e-01	ci left: 4.048474e-04	ci right 4.908778e-04	k: 424	n:950000
Cons ci ratio: 1.930826e-01	ci left: 3.918192e-04	ci right 4.765384e-04	k: 411	n:950000
KS ci ratio: 5.463699e-03	ci left: 3.504652e-01	ci right 3.523863e-01	k: 333854	n:950000
LYPLA1   950000 perm   490 sec   (1940 perm/sec)   p_kst 3.514253e-01   p_cons 4.326316e-04   p_joint 4.463158e-04

Joint ci ratio: 1.896598e-01	ci left: 4.026144e-04	ci right 4.879468e-04	k: 426	n:960000
Cons ci ratio: 1.926158e-01	ci left: 3.897205e-04	ci right 4.737583e-04	k: 413	n:960000
KS ci ratio: 5.435519e-03	ci left: 3.504408e-01	ci right 3.523518e-01	k: 337340	n:960000
LYPLA1   960000 perm   498 sec   (1927 perm/sec)   p_kst 3.513958e-01   p_cons 4.302083e-04   p_joint 4.437500e-04

Joint ci ratio: 1.881238e-01	ci left: 4.053391e-04	ci right 4.904737e-04	k: 433	n:970000
Cons ci ratio: 1.910075e-01	ci left: 3.925728e-04	ci right 4.764368e-04	k: 420	n:970000
KS ci ratio: 5.407942e-03	ci left: 3.504025e-01	ci right 3.523036e-01	k: 340812	n:970000
LYPLA1   970000 perm   507 sec   (1914 perm/sec)   p_kst 3.513526e-01   p_cons 4.329897e-04   p_joint 4.463918e-04

Joint ci ratio: 1.304616e-01	ci left: 8.603528e-04	ci right 9.814038e-04	k: 901	n:980000
Cons ci ratio: 1.905557e-01	ci left: 3.905102e-04	ci right 4.737134e-04	k: 422	n:980000
KS ci ratio: 5.380635e-03	ci left: 3.503772e-01	ci right 3.522686e-01	k: 344296	n:980000
LYPLA1   980000 perm   515 sec   (1901 perm/sec)   p_kst 3.513224e-01   p_cons 4.306122e-04   p_joint 9.193878e-04

Joint ci ratio: 1.424203e-01	ci left: 7.101835e-04	ci right 8.200441e-04	k: 756	n:990000
Cons ci ratio: 1.896611e-01	ci left: 3.904138e-04	ci right 4.731609e-04	k: 426	n:990000
KS ci ratio: 5.353596e-03	ci left: 3.503646e-01	ci right 3.522463e-01	k: 347792	n:990000
LYPLA1   990000 perm   524 sec   (1889 perm/sec)   p_kst 3.513051e-01   p_cons 4.303030e-04   p_joint 7.636364e-04

Joint ci ratio: 1.855759e-01	ci left: 4.046176e-04	ci right 4.883202e-04	k: 445	n:1000000
Cons ci ratio: 1.892187e-01	ci left: 3.884147e-04	ci right 4.705241e-04	k: 428	n:1000000
KS ci ratio: 5.325862e-03	ci left: 3.504462e-01	ci right 3.523186e-01	k: 351382	n:1000000
LYPLA1   1000000 perm   533 sec   (1876 perm/sec)   p_kst 3.513820e-01   p_cons 4.280000e-04   p_joint 4.450000e-04

Joint ci ratio: 1.278648e-01	ci left: 8.702481e-04	ci right 9.900695e-04	k: 938	n:1010000
Cons ci ratio: 1.864145e-01	ci left: 3.968354e-04	ci right 4.793410e-04	k: 441	n:1010000
KS ci ratio: 5.299820e-03	ci left: 3.504174e-01	ci right 3.522805e-01	k: 354862	n:1010000
LYPLA1   1010000 perm   542 sec   (1863 perm/sec)   p_kst 3.513485e-01   p_cons 4.366337e-04   p_joint 9.287129e-04

Joint ci ratio: 1.269886e-01	ci left: 8.740552e-04	ci right 9.935139e-04	k: 951	n:1020000
Cons ci ratio: 1.847497e-01	ci left: 4.004237e-04	ci right 4.828485e-04	k: 449	n:1020000
KS ci ratio: 5.273464e-03	ci left: 3.504490e-01	ci right 3.523029e-01	k: 358403	n:1020000
LYPLA1   1020000 perm   551 sec   (1851 perm/sec)   p_kst 3.513755e-01   p_cons 4.401961e-04   p_joint 9.323529e-04

Joint ci ratio: 1.240875e-01	ci left: 9.078877e-04	ci right 1.028927e-03	k: 996	n:1030000
Cons ci ratio: 1.837318e-01	ci left: 4.011666e-04	ci right 4.832387e-04	k: 454	n:1030000
KS ci ratio: 5.247956e-03	ci left: 3.504401e-01	ci right 3.522850e-01	k: 361903	n:1030000
LYPLA1   1030000 perm   560 sec   (1839 perm/sec)   p_kst 3.513621e-01   p_cons 4.407767e-04   p_joint 9.669903e-04

Joint ci ratio: 1.260653e-01	ci left: 8.702818e-04	ci right 9.882954e-04	k: 965	n:1040000
Cons ci ratio: 1.827304e-01	ci left: 4.018964e-04	ci right 4.836201e-04	k: 459	n:1040000
KS ci ratio: 5.221515e-03	ci left: 3.505449e-01	ci right 3.523810e-01	k: 365521	n:1040000
LYPLA1   1040000 perm   570 sec   (1826 perm/sec)   p_kst 3.514625e-01   p_cons 4.413462e-04   p_joint 9.278846e-04

Joint ci ratio: 1.229824e-01	ci left: 9.072077e-04	ci right 1.027001e-03	k: 1014	n:1050000
Cons ci ratio: 1.813555e-01	ci left: 4.044317e-04	ci right 4.859843e-04	k: 466	n:1050000
KS ci ratio: 5.195665e-03	ci left: 3.506305e-01	ci right 3.524579e-01	k: 369121	n:1050000
LYPLA1   1050000 perm   579 sec   (1814 perm/sec)   p_kst 3.515438e-01   p_cons 4.438095e-04   p_joint 9.657143e-04

Joint ci ratio: 1.225606e-01	ci left: 9.050500e-04	ci right 1.024119e-03	k: 1021	n:1060000
Cons ci ratio: 1.805838e-01	ci left: 4.042190e-04	ci right 4.853438e-04	k: 470	n:1060000
KS ci ratio: 5.171072e-03	ci left: 3.506372e-01	ci right 3.524560e-01	k: 372639	n:1060000
LYPLA1   1060000 perm   589 sec   (1801 perm/sec)   p_kst 3.515462e-01   p_cons 4.433962e-04   p_joint 9.632075e-04

Joint ci ratio: 1.217883e-01	ci left: 9.083699e-04	ci right 1.027068e-03	k: 1034	n:1070000
Cons ci ratio: 1.792565e-01	ci left: 4.066887e-04	ci right 4.876442e-04	k: 477	n:1070000
KS ci ratio: 5.146223e-03	ci left: 3.506971e-01	ci right 3.525074e-01	k: 376214	n:1070000
LYPLA1   1070000 perm   598 sec   (1790 perm/sec)   p_kst 3.516019e-01   p_cons 4.457944e-04   p_joint 9.663551e-04

Joint ci ratio: 1.211461e-01	ci left: 9.098349e-04	ci right 1.028053e-03	k: 1045	n:1080000
Cons ci ratio: 1.783262e-01	ci left: 4.073455e-04	ci right 4.879656e-04	k: 482	n:1080000
KS ci ratio: 5.121937e-03	ci left: 3.507374e-01	ci right 3.525393e-01	k: 379769	n:1080000
LYPLA1   1080000 perm   607 sec   (1778 perm/sec)   p_kst 3.516380e-01   p_cons 4.462963e-04   p_joint 9.675926e-04

Joint ci ratio: 1.204570e-01	ci left: 9.121643e-04	ci right 1.029963e-03	k: 1057	n:1090000
Cons ci ratio: 1.775924e-01	ci left: 4.071147e-04	ci right 4.873219e-04	k: 486	n:1090000
KS ci ratio: 5.098146e-03	ci left: 3.507632e-01	ci right 3.525569e-01	k: 383309	n:1090000
LYPLA1   1090000 perm   617 sec   (1767 perm/sec)   p_kst 3.516596e-01   p_cons 4.458716e-04   p_joint 9.697248e-04

Joint ci ratio: 1.200043e-01	ci left: 9.109259e-04	ci right 1.028091e-03	k: 1065	n:1100000
Cons ci ratio: 1.765083e-01	ci left: 4.086265e-04	ci right 4.885877e-04	k: 492	n:1100000
KS ci ratio: 5.075168e-03	ci left: 3.507449e-01	ci right 3.525304e-01	k: 386801	n:1100000
LYPLA1   1100000 perm   627 sec   (1756 perm/sec)   p_kst 3.516373e-01   p_cons 4.472727e-04   p_joint 9.681818e-04

Joint ci ratio: 1.193898e-01	ci left: 9.123326e-04	ci right 1.029035e-03	k: 1076	n:1110000
Cons ci ratio: 1.757966e-01	ci left: 4.083899e-04	ci right 4.879483e-04	k: 496	n:1110000
KS ci ratio: 5.052718e-03	ci left: 3.507072e-01	ci right 3.524846e-01	k: 390271	n:1110000
LYPLA1   1110000 perm   636 sec   (1745 perm/sec)   p_kst 3.515955e-01   p_cons 4.468468e-04   p_joint 9.693694e-04

Joint ci ratio: 1.190038e-01	ci left: 9.102504e-04	ci right 1.026284e-03	k: 1083	n:1120000
Cons ci ratio: 1.749189e-01	ci left: 4.090119e-04	ci right 4.882516e-04	k: 501	n:1120000
KS ci ratio: 5.030288e-03	ci left: 3.506951e-01	ci right 3.524646e-01	k: 393769	n:1120000
LYPLA1   1120000 perm   646 sec   (1735 perm/sec)   p_kst 3.515795e-01   p_cons 4.473214e-04   p_joint 9.669643e-04

Joint ci ratio: 1.181349e-01	ci left: 9.159346e-04	ci right 1.031781e-03	k: 1099	n:1130000
Cons ci ratio: 1.738827e-01	ci left: 4.104703e-04	ci right 4.894721e-04	k: 507	n:1130000
KS ci ratio: 5.007561e-03	ci left: 3.507373e-01	ci right 3.524989e-01	k: 397328	n:1130000
LYPLA1   1130000 perm   655 sec   (1724 perm/sec)   p_kst 3.516177e-01   p_cons 4.486726e-04   p_joint 9.725664e-04

Joint ci ratio: 1.176546e-01	ci left: 9.155620e-04	ci right 1.030857e-03	k: 1108	n:1140000
Cons ci ratio: 1.733716e-01	ci left: 4.093869e-04	ci right 4.879243e-04	k: 510	n:1140000
KS ci ratio: 4.985417e-03	ci left: 3.507533e-01	ci right 3.525071e-01	k: 400858	n:1140000
LYPLA1   1140000 perm   665 sec   (1714 perm/sec)   p_kst 3.516298e-01   p_cons 4.473684e-04   p_joint 9.719298e-04

Joint ci ratio: 1.173378e-01	ci left: 9.126645e-04	ci right 1.027264e-03	k: 1114	n:1150000
Cons ci ratio: 1.730335e-01	ci left: 4.074907e-04	ci right 4.854960e-04	k: 512	n:1150000
KS ci ratio: 4.963063e-03	ci left: 3.508151e-01	ci right 3.525613e-01	k: 404441	n:1150000
LYPLA1   1150000 perm   675 sec   (1703 perm/sec)   p_kst 3.516878e-01   p_cons 4.452174e-04   p_joint 9.686957e-04

Joint ci ratio: 1.169192e-01	ci left: 9.114912e-04	ci right 1.025507e-03	k: 1122	n:1160000
Cons ci ratio: 1.720303e-01	ci left: 4.089270e-04	ci right 4.867062e-04	k: 518	n:1160000
KS ci ratio: 4.941894e-03	ci left: 3.507939e-01	ci right 3.525327e-01	k: 407929	n:1160000
LYPLA1   1160000 perm   685 sec   (1693 perm/sec)   p_kst 3.516629e-01   p_cons 4.465517e-04   p_joint 9.672414e-04

Joint ci ratio: 1.163506e-01	ci left: 9.128281e-04	ci right 1.026418e-03	k: 1133	n:1170000
Cons ci ratio: 1.708816e-01	ci left: 4.111581e-04	ci right 4.887857e-04	k: 525	n:1170000
KS ci ratio: 4.920929e-03	ci left: 3.507792e-01	ci right 3.525104e-01	k: 411424	n:1170000
LYPLA1   1170000 perm   695 sec   (1683 perm/sec)   p_kst 3.516444e-01   p_cons 4.487179e-04   p_joint 9.683761e-04

Joint ci ratio: 1.157903e-01	ci left: 9.141437e-04	ci right 1.027312e-03	k: 1144	n:1180000
Cons ci ratio: 1.702356e-01	ci left: 4.109188e-04	ci right 4.881778e-04	k: 529	n:1180000
KS ci ratio: 4.899673e-03	ci left: 3.508164e-01	ci right 3.525403e-01	k: 414980	n:1180000
LYPLA1   1180000 perm   705 sec   (1673 perm/sec)   p_kst 3.516780e-01   p_cons 4.483051e-04   p_joint 9.694915e-04

Joint ci ratio: 1.152880e-01	ci left: 9.146224e-04	ci right 1.027325e-03	k: 1154	n:1190000
Cons ci ratio: 1.694382e-01	ci left: 4.114888e-04	ci right 4.884556e-04	k: 534	n:1190000
KS ci ratio: 4.878789e-03	ci left: 3.508437e-01	ci right 3.525604e-01	k: 418525	n:1190000
LYPLA1   1190000 perm   715 sec   (1664 perm/sec)   p_kst 3.517017e-01   p_cons 4.487395e-04   p_joint 9.697479e-04

Joint ci ratio: 1.145953e-01	ci left: 9.183319e-04	ci right 1.030766e-03	k: 1168	n:1200000
Cons ci ratio: 1.689652e-01	ci left: 4.104538e-04	ci right 4.869909e-04	k: 537	n:1200000
KS ci ratio: 4.858933e-03	ci left: 3.507990e-01	ci right 3.525084e-01	k: 421984	n:1200000
LYPLA1   1200000 perm   725 sec   (1654 perm/sec)   p_kst 3.516533e-01   p_cons 4.475000e-04   p_joint 9.733333e-04

Joint ci ratio: 1.141568e-01	ci left: 9.179676e-04	ci right 1.029898e-03	k: 1177	n:1210000
Cons ci ratio: 1.681855e-01	ci left: 4.110196e-04	ci right 4.872726e-04	k: 542	n:1210000
KS ci ratio: 4.839222e-03	ci left: 3.507641e-01	ci right 3.524664e-01	k: 425454	n:1210000
LYPLA1   1210000 perm   736 sec   (1645 perm/sec)   p_kst 3.516149e-01   p_cons 4.479339e-04   p_joint 9.727273e-04

Joint ci ratio: 1.136274e-01	ci left: 9.192028e-04	ci right 1.030729e-03	k: 1188	n:1220000
Cons ci ratio: 1.669598e-01	ci left: 4.139330e-04	ci right 4.901106e-04	k: 550	n:1220000
KS ci ratio: 4.819237e-03	ci left: 3.507781e-01	ci right 3.524734e-01	k: 428983	n:1220000
LYPLA1   1220000 perm   746 sec   (1636 perm/sec)   p_kst 3.516254e-01   p_cons 4.508197e-04   p_joint 9.737705e-04

Joint ci ratio: 1.129172e-01	ci left: 9.235793e-04	ci right 1.034890e-03	k: 1203	n:1230000
Cons ci ratio: 1.668088e-01	ci left: 4.113467e-04	ci right 4.869730e-04	k: 551	n:1230000
KS ci ratio: 4.799771e-03	ci left: 3.507659e-01	ci right 3.524543e-01	k: 432480	n:1230000
LYPLA1   1230000 perm   756 sec   (1626 perm/sec)   p_kst 3.516098e-01   p_cons 4.479675e-04   p_joint 9.780488e-04

Joint ci ratio: 1.124048e-01	ci left: 9.247521e-04	ci right 1.035664e-03	k: 1214	n:1240000
Cons ci ratio: 1.656128e-01	ci left: 4.142127e-04	ci right 4.897654e-04	k: 559	n:1240000
KS ci ratio: 4.779821e-03	ci left: 3.508224e-01	ci right 3.525041e-01	k: 436062	n:1240000
LYPLA1   1240000 perm   767 sec   (1617 perm/sec)   p_kst 3.516629e-01   p_cons 4.508065e-04   p_joint 9.790323e-04

Joint ci ratio: 1.118537e-01	ci left: 9.266849e-04	ci right 1.037248e-03	k: 1226	n:1250000
Cons ci ratio: 1.648783e-01	ci left: 4.147336e-04	ci right 4.900126e-04	k: 564	n:1250000
KS ci ratio: 4.761111e-03	ci left: 3.507829e-01	ci right 3.524578e-01	k: 439525	n:1250000
LYPLA1   1250000 perm   777 sec   (1608 perm/sec)   p_kst 3.516200e-01   p_cons 4.512000e-04   p_joint 9.808000e-04

Joint ci ratio: 1.114007e-01	ci left: 9.270452e-04	ci right 1.037174e-03	k: 1236	n:1260000
Cons ci ratio: 1.644424e-01	ci left: 4.137248e-04	ci right 4.886026e-04	k: 567	n:1260000
KS ci ratio: 4.742388e-03	ci left: 3.507662e-01	ci right 3.524344e-01	k: 443016	n:1260000
LYPLA1   1260000 perm   788 sec   (1599 perm/sec)   p_kst 3.516000e-01   p_cons 4.500000e-04   p_joint 9.809524e-04

Joint ci ratio: 1.109976e-01	ci left: 9.266352e-04	ci right 1.036291e-03	k: 1245	n:1270000
Cons ci ratio: 1.642981e-01	ci left: 4.112221e-04	ci right 4.855751e-04	k: 568	n:1270000
KS ci ratio: 4.723322e-03	ci left: 3.508042e-01	ci right 3.524658e-01	k: 446576	n:1270000
LYPLA1   1270000 perm   799 sec   (1590 perm/sec)   p_kst 3.516346e-01   p_cons 4.472441e-04   p_joint 9.803150e-04

Joint ci ratio: 1.104669e-01	ci left: 9.285112e-04	ci right 1.037829e-03	k: 1257	n:1280000
Cons ci ratio: 1.635809e-01	ci left: 4.117555e-04	ci right 4.858480e-04	k: 573	n:1280000
KS ci ratio: 4.705136e-03	ci left: 3.507783e-01	ci right 3.524334e-01	k: 450055	n:1280000
LYPLA1   1280000 perm   809 sec   (1582 perm/sec)   p_kst 3.516055e-01   p_cons 4.476562e-04   p_joint 9.820313e-04

Joint ci ratio: 1.101174e-01	ci left: 9.273439e-04	ci right 1.036157e-03	k: 1265	n:1290000
Cons ci ratio: 1.631552e-01	ci left: 4.107940e-04	ci right 4.845023e-04	k: 576	n:1290000
KS ci ratio: 4.687119e-03	ci left: 3.507566e-01	ci right 3.524053e-01	k: 453539	n:1290000
LYPLA1   1290000 perm   820 sec   (1573 perm/sec)   p_kst 3.515806e-01   p_cons 4.465116e-04   p_joint 9.806202e-04

Joint ci ratio: 1.099008e-01	ci left: 9.239507e-04	ci right 1.032139e-03	k: 1270	n:1300000
Cons ci ratio: 1.627328e-01	ci left: 4.098477e-04	ci right 4.831771e-04	k: 579	n:1300000
KS ci ratio: 4.669907e-03	ci left: 3.506769e-01	ci right 3.523191e-01	k: 456947	n:1300000
LYPLA1   1300000 perm   831 sec   (1565 perm/sec)   p_kst 3.514977e-01   p_cons 4.453846e-04   p_joint 9.769231e-04

Joint ci ratio: 1.093429e-01	ci left: 9.265493e-04	ci right 1.034455e-03	k: 1283	n:1310000
Cons ci ratio: 1.623136e-01	ci left: 4.089160e-04	ci right 4.818719e-04	k: 582	n:1310000
KS ci ratio: 4.652056e-03	ci left: 3.506793e-01	ci right 3.523152e-01	k: 460461	n:1310000
LYPLA1   1310000 perm   842 sec   (1556 perm/sec)   p_kst 3.514969e-01   p_cons 4.442748e-04   p_joint 9.793893e-04

Joint ci ratio: 1.089195e-01	ci left: 9.268990e-04	ci right 1.034401e-03	k: 1293	n:1320000
Cons ci ratio: 1.616220e-01	ci left: 4.094525e-04	ci right 4.821626e-04	k: 587	n:1320000
KS ci ratio: 4.634748e-03	ci left: 3.506484e-01	ci right 3.522780e-01	k: 463931	n:1320000
LYPLA1   1320000 perm   853 sec   (1547 perm/sec)   p_kst 3.514629e-01   p_cons 4.446970e-04   p_joint 9.795455e-04

Joint ci ratio: 1.084595e-01	ci left: 9.279757e-04	ci right 1.035119e-03	k: 1304	n:1330000
Cons ci ratio: 1.612114e-01	ci left: 4.085384e-04	ci right 4.808840e-04	k: 590	n:1330000
KS ci ratio: 4.616770e-03	ci left: 3.507028e-01	ci right 3.523264e-01	k: 467514	n:1330000
LYPLA1   1330000 perm   865 sec   (1538 perm/sec)   p_kst 3.515143e-01   p_cons 4.436090e-04   p_joint 9.804511e-04

Joint ci ratio: 1.080463e-01	ci left: 9.283111e-04	ci right 1.035059e-03	k: 1314	n:1340000
Cons ci ratio: 1.603991e-01	ci left: 4.097871e-04	ci right 4.819529e-04	k: 596	n:1340000
KS ci ratio: 4.599926e-03	ci left: 3.506647e-01	ci right 3.522822e-01	k: 470974	n:1340000
LYPLA1   1340000 perm   876 sec   (1529 perm/sec)   p_kst 3.514731e-01   p_cons 4.447761e-04   p_joint 9.805970e-04

Joint ci ratio: 1.076785e-01	ci left: 9.279216e-04	ci right 1.034238e-03	k: 1323	n:1350000
Cons ci ratio: 1.595990e-01	ci left: 4.110181e-04	ci right 4.830051e-04	k: 602	n:1350000
KS ci ratio: 4.582968e-03	ci left: 3.506568e-01	ci right 3.522683e-01	k: 474474	n:1350000
LYPLA1   1350000 perm   888 sec   (1521 perm/sec)   p_kst 3.514622e-01   p_cons 4.459259e-04   p_joint 9.800000e-04

Joint ci ratio: 1.071536e-01	ci left: 9.304007e-04	ci right 1.036449e-03	k: 1336	n:1360000
Cons ci ratio: 1.586805e-01	ci left: 4.129380e-04	ci right 4.848055e-04	k: 609	n:1360000
KS ci ratio: 4.565753e-03	ci left: 3.506931e-01	ci right 3.522987e-01	k: 478034	n:1360000
LYPLA1   1360000 perm   899 sec   (1513 perm/sec)   p_kst 3.514956e-01   p_cons 4.477941e-04   p_joint 9.823529e-04

Joint ci ratio: 1.068743e-01	ci left: 9.285821e-04	ci right 1.034130e-03	k: 1343	n:1370000
Cons ci ratio: 1.581628e-01	ci left: 4.127279e-04	ci right 4.843021e-04	k: 613	n:1370000
KS ci ratio: 4.548965e-03	ci left: 3.507056e-01	ci right 3.523053e-01	k: 481562	n:1370000
LYPLA1   1370000 perm   910 sec   (1505 perm/sec)   p_kst 3.515051e-01   p_cons 4.474453e-04   p_joint 9.802920e-04

Joint ci ratio: 1.063610e-01	ci left: 9.310224e-04	ci right 1.036307e-03	k: 1356	n:1380000
Cons ci ratio: 1.575227e-01	ci left: 4.132172e-04	ci right 4.845588e-04	k: 618	n:1380000
KS ci ratio: 4.532295e-03	ci left: 3.507244e-01	ci right 3.523183e-01	k: 485099	n:1380000
LYPLA1   1380000 perm   922 sec   (1497 perm/sec)   p_kst 3.515210e-01   p_cons 4.478261e-04   p_joint 9.826087e-04

Joint ci ratio: 1.058937e-01	ci left: 9.327284e-04	ci right 1.037714e-03	k: 1368	n:1390000
Cons ci ratio: 1.567647e-01	ci left: 4.143912e-04	ci right 4.855589e-04	k: 624	n:1390000
KS ci ratio: 4.514845e-03	ci left: 3.508400e-01	ci right 3.524283e-01	k: 488771	n:1390000
LYPLA1   1390000 perm   934 sec   (1489 perm/sec)   p_kst 3.516338e-01   p_cons 4.489209e-04   p_joint 9.841727e-04

Joint ci ratio: 1.051661e-01	ci left: 9.392795e-04	ci right 1.044231e-03	k: 1387	n:1400000
Cons ci ratio: 1.556478e-01	ci left: 4.176086e-04	ci right 4.887702e-04	k: 633	n:1400000
KS ci ratio: 4.498610e-03	ci left: 3.508512e-01	ci right 3.524337e-01	k: 492299	n:1400000
LYPLA1   1400000 perm   945 sec   (1481 perm/sec)   p_kst 3.516421e-01   p_cons 4.521429e-04   p_joint 9.907143e-04

Joint ci ratio: 1.047893e-01	ci left: 9.395239e-04	ci right 1.044104e-03	k: 1397	n:1410000
Cons ci ratio: 1.549164e-01	ci left: 4.187369e-04	ci right 4.897243e-04	k: 639	n:1410000
KS ci ratio: 4.482722e-03	ci left: 3.508445e-01	ci right 3.524214e-01	k: 495802	n:1410000
LYPLA1   1410000 perm   957 sec   (1473 perm/sec)   p_kst 3.516326e-01   p_cons 4.531915e-04   p_joint 9.907801e-04

Joint ci ratio: 1.046026e-01	ci left: 9.363364e-04	ci right 1.040364e-03	k: 1402	n:1420000
Cons ci ratio: 1.547957e-01	ci left: 4.164649e-04	ci right 4.870071e-04	k: 640	n:1420000
KS ci ratio: 4.466747e-03	ci left: 3.508639e-01	ci right 3.524353e-01	k: 499342	n:1420000
LYPLA1   1420000 perm   969 sec   (1465 perm/sec)   p_kst 3.516493e-01   p_cons 4.507042e-04   p_joint 9.873239e-04

Joint ci ratio: 1.041580e-01	ci left: 9.379611e-04	ci right 1.041699e-03	k: 1414	n:1430000
Cons ci ratio: 1.541954e-01	ci left: 4.169139e-04	ci right 4.872330e-04	k: 645	n:1430000
KS ci ratio: 4.451235e-03	ci left: 3.508530e-01	ci right 3.524189e-01	k: 502839	n:1430000
LYPLA1   1430000 perm   981 sec   (1458 perm/sec)   p_kst 3.516357e-01   p_cons 4.510490e-04   p_joint 9.888112e-04

Joint ci ratio: 1.036827e-01	ci left: 9.402407e-04	ci right 1.043728e-03	k: 1427	n:1440000
Cons ci ratio: 1.537203e-01	ci left: 4.166894e-04	ci right 4.867341e-04	k: 649	n:1440000
KS ci ratio: 4.435032e-03	ci left: 3.509298e-01	ci right 3.524903e-01	k: 506462	n:1440000
LYPLA1   1440000 perm   993 sec   (1451 perm/sec)   p_kst 3.517097e-01   p_cons 4.506944e-04   p_joint 9.909722e-04

Joint ci ratio: 1.033576e-01	ci left: 9.398025e-04	ci right 1.042897e-03	k: 1436	n:1450000
Cons ci ratio: 1.532495e-01	ci left: 4.164684e-04	ci right 4.862418e-04	k: 653	n:1450000
KS ci ratio: 4.419613e-03	ci left: 3.509427e-01	ci right 3.524979e-01	k: 509994	n:1450000
LYPLA1   1450000 perm   1005 sec   (1443 perm/sec)   p_kst 3.517200e-01   p_cons 4.503448e-04   p_joint 9.903448e-04

Joint ci ratio: 1.031068e-01	ci left: 9.380362e-04	ci right 1.040672e-03	k: 1443	n:1460000
Cons ci ratio: 1.525512e-01	ci left: 4.175682e-04	ci right 4.871781e-04	k: 659	n:1460000
KS ci ratio: 4.404194e-03	ci left: 3.509720e-01	ci right 3.525218e-01	k: 513550	n:1460000
LYPLA1   1460000 perm   1017 sec   (1436 perm/sec)   p_kst 3.517466e-01   p_cons 4.513699e-04   p_joint 9.883562e-04

Joint ci ratio: 1.026457e-01	ci left: 9.402710e-04	ci right 1.042664e-03	k: 1456	n:1470000
Cons ci ratio: 1.522058e-01	ci left: 4.166906e-04	ci right 4.859825e-04	k: 662	n:1470000
KS ci ratio: 4.389342e-03	ci left: 3.509586e-01	ci right 3.525032e-01	k: 517044	n:1470000
LYPLA1   1470000 perm   1029 sec   (1429 perm/sec)   p_kst 3.517306e-01   p_cons 4.503401e-04   p_joint 9.904762e-04

Joint ci ratio: 1.025053e-01	ci left: 9.365511e-04	ci right 1.038391e-03	k: 1460	n:1480000
Cons ci ratio: 1.520913e-01	ci left: 4.145251e-04	ci right 4.834003e-04	k: 663	n:1480000
KS ci ratio: 4.374270e-03	ci left: 3.509840e-01	ci right 3.525233e-01	k: 520595	n:1480000
LYPLA1   1480000 perm   1041 sec   (1421 perm/sec)   p_kst 3.517534e-01   p_cons 4.479730e-04   p_joint 9.864865e-04

Joint ci ratio: 1.022259e-01	ci left: 9.354972e-04	ci right 1.036928e-03	k: 1468	n:1490000
Cons ci ratio: 1.517490e-01	ci left: 4.136799e-04	ci right 4.822459e-04	k: 666	n:1490000
KS ci ratio: 4.359082e-03	ci left: 3.510372e-01	ci right 3.525714e-01	k: 524188	n:1490000
LYPLA1   1490000 perm   1053 sec   (1414 perm/sec)   p_kst 3.518040e-01   p_cons 4.469799e-04   p_joint 9.852349e-04

Joint ci ratio: 1.017764e-01	ci left: 9.377062e-04	ci right 1.038903e-03	k: 1481	n:1500000
Cons ci ratio: 1.510709e-01	ci left: 4.147705e-04	ci right 4.831824e-04	k: 672	n:1500000
KS ci ratio: 4.344674e-03	ci left: 3.510244e-01	ci right 3.525535e-01	k: 527683	n:1500000
LYPLA1   1500000 perm   1066 sec   (1407 perm/sec)   p_kst 3.517887e-01   p_cons 4.480000e-04   p_joint 9.873333e-04

Joint ci ratio: 1.016053e-01	ci left: 9.347232e-04	ci right 1.035418e-03	k: 1486	n:1510000
Cons ci ratio: 1.505128e-01	ci left: 4.152100e-04	ci right 4.834186e-04	k: 677	n:1510000
KS ci ratio: 4.330112e-03	ci left: 3.510429e-01	ci right 3.525669e-01	k: 531225	n:1510000
LYPLA1   1510000 perm   1078 sec   (1400 perm/sec)   p_kst 3.518046e-01   p_cons 4.483444e-04   p_joint 9.841060e-04

Joint ci ratio: 1.010965e-01	ci left: 9.381920e-04	ci right 1.038725e-03	k: 1501	n:1520000
Cons ci ratio: 1.496325e-01	ci left: 4.175439e-04	ci right 4.856988e-04	k: 685	n:1520000
KS ci ratio: 4.315447e-03	ci left: 3.510875e-01	ci right 3.526065e-01	k: 534807	n:1520000
LYPLA1   1520000 perm   1091 sec   (1393 perm/sec)   p_kst 3.518467e-01   p_cons 4.506579e-04   p_joint 9.875000e-04

Joint ci ratio: 1.006950e-01	ci left: 9.397053e-04	ci right 1.039977e-03	k: 1513	n:1530000
Cons ci ratio: 1.491981e-01	ci left: 4.173315e-04	ci right 4.852363e-04	k: 689	n:1530000
KS ci ratio: 4.301281e-03	ci left: 3.510942e-01	ci right 3.526083e-01	k: 538332	n:1530000
LYPLA1   1530000 perm   1104 sec   (1386 perm/sec)   p_kst 3.518510e-01   p_cons 4.503268e-04   p_joint 9.888889e-04

Joint ci ratio: 1.002983e-01	ci left: 9.411997e-04	ci right 1.041212e-03	k: 1525	n:1540000
Cons ci ratio: 1.483405e-01	ci left: 4.196230e-04	ci right 4.874734e-04	k: 697	n:1540000
KS ci ratio: 4.287088e-03	ci left: 3.511184e-01	ci right 3.526276e-01	k: 541884	n:1540000
LYPLA1   1540000 perm   1116 sec   (1380 perm/sec)   p_kst 3.518727e-01   p_cons 4.525974e-04   p_joint 9.902597e-04

Joint ci ratio: 9.980875e-02	ci left: 9.445628e-04	ci right 1.044414e-03	k: 1540	n:1550000
Cons ci ratio: 1.471850e-01	ci left: 4.237503e-04	ci right 4.916873e-04	k: 708	n:1550000
KS ci ratio: 4.273543e-03	ci left: 3.510882e-01	ci right 3.525924e-01	k: 545352	n:1550000
LYPLA1   1550000 perm   1129 sec   (1373 perm/sec)   p_kst 3.518400e-01   p_cons 4.567742e-04   p_joint 9.935484e-04

Joint ci ratio: 9.958292e-02	ci left: 9.428832e-04	ci right 1.042318e-03	k: 1547	n:1560000
Cons ci ratio: 1.464636e-01	ci left: 4.253563e-04	ci right 4.931874e-04	k: 715	n:1560000
KS ci ratio: 4.259869e-03	ci left: 3.510858e-01	ci right 3.525852e-01	k: 548863	n:1560000
LYPLA1   1560000 perm   1142 sec   (1366 perm/sec)   p_kst 3.518353e-01   p_cons 4.583333e-04   p_joint 9.916667e-04

Joint ci ratio: 9.923095e-02	ci left: 9.437098e-04	ci right 1.042859e-03	k: 1558	n:1570000
Cons ci ratio: 1.460562e-01	ci left: 4.251015e-04	ci right 4.926870e-04	k: 719	n:1570000
KS ci ratio: 4.246567e-03	ci left: 3.510574e-01	ci right 3.525520e-01	k: 552333	n:1570000
LYPLA1   1570000 perm   1155 sec   (1360 perm/sec)   p_kst 3.518045e-01   p_cons 4.579618e-04   p_joint 9.923567e-04

Joint ci ratio: 9.881969e-02	ci left: 9.457610e-04	ci right 1.044690e-03	k: 1571	n:1580000
Cons ci ratio: 1.455517e-01	ci left: 4.254601e-04	ci right 4.928486e-04	k: 724	n:1580000
KS ci ratio: 4.233178e-03	ci left: 3.510522e-01	ci right 3.525420e-01	k: 555839	n:1580000
LYPLA1   1580000 perm   1167 sec   (1353 perm/sec)   p_kst 3.517968e-01   p_cons 4.582278e-04   p_joint 9.943038e-04

Joint ci ratio: 9.856926e-02	ci left: 9.447201e-04	ci right 1.043276e-03	k: 1579	n:1590000
Cons ci ratio: 1.449531e-01	ci left: 4.264207e-04	ci right 4.936596e-04	k: 730	n:1590000
KS ci ratio: 4.220060e-03	ci left: 3.510313e-01	ci right 3.525164e-01	k: 559320	n:1590000
LYPLA1   1590000 perm   1180 sec   (1347 perm/sec)   p_kst 3.517736e-01   p_cons 4.591195e-04   p_joint 9.930818e-04

Joint ci ratio: 9.828975e-02	ci left: 9.443021e-04	ci right 1.042519e-03	k: 1588	n:1600000
Cons ci ratio: 1.443618e-01	ci left: 4.273699e-04	ci right 4.944598e-04	k: 736	n:1600000
KS ci ratio: 4.207335e-03	ci left: 3.509813e-01	ci right 3.524617e-01	k: 562754	n:1600000
LYPLA1   1600000 perm   1193 sec   (1341 perm/sec)   p_kst 3.517212e-01   p_cons 4.600000e-04   p_joint 9.925000e-04

Joint ci ratio: 9.804331e-02	ci left: 9.432838e-04	ci right 1.041134e-03	k: 1596	n:1610000
Cons ci ratio: 1.440689e-01	ci left: 4.265115e-04	ci right 4.933192e-04	k: 739	n:1610000
KS ci ratio: 4.194318e-03	ci left: 3.509760e-01	ci right 3.524518e-01	k: 566259	n:1610000
LYPLA1   1610000 perm   1207 sec   (1334 perm/sec)   p_kst 3.517137e-01   p_cons 4.590062e-04   p_joint 9.913043e-04

Joint ci ratio: 9.785977e-02	ci left: 9.410740e-04	ci right 1.038502e-03	k: 1602	n:1620000
Cons ci ratio: 1.439718e-01	ci left: 4.244738e-04	ci right 4.909136e-04	k: 740	n:1620000
KS ci ratio: 4.181546e-03	ci left: 3.509573e-01	ci right 3.524285e-01	k: 569742	n:1620000
LYPLA1   1620000 perm   1220 sec   (1328 perm/sec)   p_kst 3.516926e-01   p_cons 4.567901e-04   p_joint 9.888889e-04

Joint ci ratio: 9.749547e-02	ci left: 9.424827e-04	ci right 1.039672e-03	k: 1614	n:1630000
Cons ci ratio: 1.435848e-01	ci left: 4.242353e-04	ci right 4.904440e-04	k: 744	n:1630000
KS ci ratio: 4.168475e-03	ci left: 3.509841e-01	ci right 3.524508e-01	k: 573299	n:1630000
LYPLA1   1630000 perm   1233 sec   (1322 perm/sec)   p_kst 3.517172e-01   p_cons 4.564417e-04   p_joint 9.901840e-04

Joint ci ratio: 9.719501e-02	ci left: 9.426850e-04	ci right 1.039579e-03	k: 1624	n:1640000
Cons ci ratio: 1.431054e-01	ci left: 4.245880e-04	ci right 4.906116e-04	k: 749	n:1640000
KS ci ratio: 4.155853e-03	ci left: 3.509746e-01	ci right 3.524369e-01	k: 576797	n:1640000
LYPLA1   1640000 perm   1247 sec   (1315 perm/sec)   p_kst 3.517055e-01   p_cons 4.567073e-04   p_joint 9.902439e-04

Joint ci ratio: 9.695670e-02	ci left: 9.417025e-04	ci right 1.038245e-03	k: 1632	n:1650000
Cons ci ratio: 1.428201e-01	ci left: 4.237679e-04	ci right 4.895213e-04	k: 752	n:1650000
KS ci ratio: 4.143411e-03	ci left: 3.509580e-01	ci right 3.524158e-01	k: 580283	n:1650000
LYPLA1   1650000 perm   1261 sec   (1309 perm/sec)   p_kst 3.516867e-01   p_cons 4.557576e-04   p_joint 9.890909e-04

Joint ci ratio: 9.669065e-02	ci left: 9.413200e-04	ci right 1.037543e-03	k: 1641	n:1660000
Cons ci ratio: 1.423483e-01	ci left: 4.241196e-04	ci right 4.896918e-04	k: 757	n:1660000
KS ci ratio: 4.131195e-03	ci left: 3.509290e-01	ci right 3.523823e-01	k: 583748	n:1660000
LYPLA1   1660000 perm   1274 sec   (1303 perm/sec)   p_kst 3.516554e-01   p_cons 4.560241e-04   p_joint 9.885542e-04

Joint ci ratio: 9.636836e-02	ci left: 9.421111e-04	ci right 1.038076e-03	k: 1652	n:1670000
Cons ci ratio: 1.417881e-01	ci left: 4.250451e-04	ci right 4.904800e-04	k: 763	n:1670000
KS ci ratio: 4.118562e-03	ci left: 3.509584e-01	ci right 3.524074e-01	k: 587310	n:1670000
LYPLA1   1670000 perm   1288 sec   (1297 perm/sec)   p_kst 3.516826e-01   p_cons 4.568862e-04   p_joint 9.892216e-04

Joint ci ratio: 9.602040e-02	ci left: 9.434744e-04	ci right 1.039212e-03	k: 1664	n:1680000
Cons ci ratio: 1.414184e-01	ci left: 4.248117e-04	ci right 4.900257e-04	k: 767	n:1680000
KS ci ratio: 4.106387e-03	ci left: 3.509493e-01	ci right 3.523940e-01	k: 590808	n:1680000
LYPLA1   1680000 perm   1301 sec   (1291 perm/sec)   p_kst 3.516714e-01   p_cons 4.565476e-04   p_joint 9.904762e-04

Joint ci ratio: 9.576196e-02	ci left: 9.430894e-04	ci right 1.038516e-03	k: 1673	n:1690000
Cons ci ratio: 1.411431e-01	ci left: 4.240104e-04	ci right 4.889640e-04	k: 770	n:1690000
KS ci ratio: 4.094745e-03	ci left: 3.508931e-01	ci right 3.523334e-01	k: 594226	n:1690000
LYPLA1   1690000 perm   1315 sec   (1285 perm/sec)   p_kst 3.516130e-01   p_cons 4.556213e-04   p_joint 9.899408e-04

Joint ci ratio: 9.550559e-02	ci left: 9.427093e-04	ci right 1.037827e-03	k: 1682	n:1700000
Cons ci ratio: 1.409605e-01	ci left: 4.226512e-04	ci right 4.873057e-04	k: 772	n:1700000
KS ci ratio: 4.082289e-03	ci left: 3.509392e-01	ci right 3.523754e-01	k: 597817	n:1700000
LYPLA1   1700000 perm   1329 sec   (1279 perm/sec)   p_kst 3.516571e-01   p_cons 4.541176e-04   p_joint 9.894118e-04

Joint ci ratio: 9.533591e-02	ci left: 9.406214e-04	ci right 1.035351e-03	k: 1688	n:1710000
Cons ci ratio: 1.404165e-01	ci left: 4.235648e-04	ci right 4.880882e-04	k: 778	n:1710000
KS ci ratio: 4.070344e-03	ci left: 3.509404e-01	ci right 3.523724e-01	k: 601332	n:1710000
LYPLA1   1710000 perm   1342 sec   (1274 perm/sec)   p_kst 3.516561e-01   p_cons 4.549708e-04   p_joint 9.871345e-04

Joint ci ratio: 9.499898e-02	ci left: 9.419634e-04	ci right 1.036474e-03	k: 1700	n:1720000
Cons ci ratio: 1.398788e-01	ci left: 4.244683e-04	ci right 4.888611e-04	k: 784	n:1720000
KS ci ratio: 4.058864e-03	ci left: 3.509009e-01	ci right 3.523286e-01	k: 604777	n:1720000
LYPLA1   1720000 perm   1356 sec   (1268 perm/sec)   p_kst 3.516145e-01   p_cons 4.558140e-04   p_joint 9.883721e-04

Joint ci ratio: 9.472096e-02	ci left: 9.421617e-04	ci right 1.036400e-03	k: 1710	n:1730000
Cons ci ratio: 1.393472e-01	ci left: 4.253618e-04	ci right 4.896245e-04	k: 790	n:1730000
KS ci ratio: 4.046840e-03	ci left: 3.509341e-01	ci right 3.523577e-01	k: 608347	n:1730000
LYPLA1   1730000 perm   1370 sec   (1262 perm/sec)   p_kst 3.516457e-01   p_cons 4.566474e-04   p_joint 9.884393e-04

Joint ci ratio: 9.444536e-02	ci left: 9.423582e-04	ci right 1.036327e-03	k: 1720	n:1740000
Cons ci ratio: 1.390838e-01	ci left: 4.245813e-04	ci right 4.885948e-04	k: 793	n:1740000
KS ci ratio: 4.035762e-03	ci left: 3.508721e-01	ci right 3.522916e-01	k: 611752	n:1740000
LYPLA1   1740000 perm   1384 sec   (1257 perm/sec)   p_kst 3.515816e-01   p_cons 4.557471e-04   p_joint 9.885057e-04

Joint ci ratio: 9.411775e-02	ci left: 9.436688e-04	ci right 1.037424e-03	k: 1732	n:1750000
Cons ci ratio: 1.387348e-01	ci left: 4.243614e-04	ci right 4.881679e-04	k: 797	n:1750000
KS ci ratio: 4.024223e-03	ci left: 3.508731e-01	ci right 3.522885e-01	k: 615266	n:1750000
LYPLA1   1750000 perm   1398 sec   (1251 perm/sec)   p_kst 3.515806e-01   p_cons 4.554286e-04   p_joint 9.897143e-04

Joint ci ratio: 9.392832e-02	ci left: 9.421908e-04	ci right 1.035600e-03	k: 1739	n:1760000
Cons ci ratio: 1.386481e-01	ci left: 4.224986e-04	ci right 4.859821e-04	k: 798	n:1760000
KS ci ratio: 4.012544e-03	ci left: 3.509014e-01	ci right 3.523128e-01	k: 618828	n:1760000
LYPLA1   1760000 perm   1413 sec   (1246 perm/sec)   p_kst 3.516068e-01   p_cons 4.534091e-04   p_joint 9.880682e-04

Joint ci ratio: 9.376689e-02	ci left: 9.401779e-04	ci right 1.033219e-03	k: 1745	n:1770000
Cons ci ratio: 1.383024e-01	ci left: 4.222932e-04	ci right 4.855746e-04	k: 802	n:1770000
KS ci ratio: 4.001233e-03	ci left: 3.508988e-01	ci right 3.523062e-01	k: 622336	n:1770000
LYPLA1   1770000 perm   1427 sec   (1240 perm/sec)   p_kst 3.516023e-01   p_cons 4.531073e-04   p_joint 9.858757e-04

Joint ci ratio: 9.352618e-02	ci left: 9.398337e-04	ci right 1.032589e-03	k: 1754	n:1780000
Cons ci ratio: 1.380448e-01	ci left: 4.215479e-04	ci right 4.845903e-04	k: 805	n:1780000
KS ci ratio: 3.989884e-03	ci left: 3.509114e-01	ci right 3.523149e-01	k: 625871	n:1780000
LYPLA1   1780000 perm   1441 sec   (1235 perm/sec)   p_kst 3.516129e-01   p_cons 4.522472e-04   p_joint 9.853933e-04

Joint ci ratio: 9.331379e-02	ci left: 9.389481e-04	ci right 1.031394e-03	k: 1762	n:1790000
Cons ci ratio: 1.375338e-01	ci left: 4.224293e-04	ci right 4.853505e-04	k: 811	n:1790000
KS ci ratio: 3.978549e-03	ci left: 3.509334e-01	ci right 3.523330e-01	k: 629423	n:1790000
LYPLA1   1790000 perm   1456 sec   (1230 perm/sec)   p_kst 3.516330e-01   p_cons 4.530726e-04   p_joint 9.843575e-04

Joint ci ratio: 9.302400e-02	ci left: 9.397005e-04	ci right 1.031917e-03	k: 1773	n:1800000
Cons ci ratio: 1.371123e-01	ci left: 4.227649e-04	ci right 4.855272e-04	k: 816	n:1800000
KS ci ratio: 3.967005e-03	ci left: 3.509902e-01	ci right 3.523859e-01	k: 633038	n:1800000
LYPLA1   1800000 perm   1470 sec   (1224 perm/sec)   p_kst 3.516878e-01   p_cons 4.533333e-04   p_joint 9.850000e-04

Joint ci ratio: 9.286719e-02	ci left: 9.377466e-04	ci right 1.029608e-03	k: 1779	n:1810000
Cons ci ratio: 1.370286e-01	ci left: 4.209627e-04	ci right 4.834162e-04	k: 817	n:1810000
KS ci ratio: 3.956007e-03	ci left: 3.509949e-01	ci right 3.523868e-01	k: 636560	n:1810000
LYPLA1   1810000 perm   1485 sec   (1219 perm/sec)   p_kst 3.516906e-01   p_cons 4.513812e-04   p_joint 9.828729e-04

Joint ci ratio: 9.247822e-02	ci left: 9.406449e-04	ci right 1.032383e-03	k: 1794	n:1820000
Cons ci ratio: 1.364459e-01	ci left: 4.223643e-04	ci right 4.847377e-04	k: 824	n:1820000
KS ci ratio: 3.945066e-03	ci left: 3.510035e-01	ci right 3.523915e-01	k: 640089	n:1820000
LYPLA1   1820000 perm   1500 sec   (1213 perm/sec)   p_kst 3.516973e-01   p_cons 4.527473e-04   p_joint 9.857143e-04

Joint ci ratio: 9.224727e-02	ci left: 9.403092e-04	ci right 1.031774e-03	k: 1803	n:1830000
Cons ci ratio: 1.359524e-01	ci left: 4.232233e-04	ci right 4.854792e-04	k: 830	n:1830000
KS ci ratio: 3.934273e-03	ci left: 3.510054e-01	ci right 3.523896e-01	k: 643606	n:1830000
LYPLA1   1830000 perm   1515 sec   (1208 perm/sec)   p_kst 3.516973e-01   p_cons 4.535519e-04   p_joint 9.852459e-04

Joint ci ratio: 9.194193e-02	ci left: 9.415704e-04	ci right 1.032838e-03	k: 1815	n:1840000
Cons ci ratio: 1.357077e-01	ci left: 4.224982e-04	ci right 4.845265e-04	k: 833	n:1840000
KS ci ratio: 3.923646e-03	ci left: 3.509981e-01	ci right 3.523785e-01	k: 647106	n:1840000
LYPLA1   1840000 perm   1530 sec   (1203 perm/sec)   p_kst 3.516880e-01   p_cons 4.527174e-04   p_joint 9.864130e-04

Joint ci ratio: 9.176531e-02	ci left: 9.401777e-04	ci right 1.031126e-03	k: 1822	n:1850000
Cons ci ratio: 1.353834e-01	ci left: 4.223032e-04	ci right 4.841429e-04	k: 837	n:1850000
KS ci ratio: 3.912897e-03	ci left: 3.510151e-01	ci right 3.523918e-01	k: 650651	n:1850000
LYPLA1   1850000 perm   1545 sec   (1198 perm/sec)   p_kst 3.517032e-01   p_cons 4.524324e-04   p_joint 9.848649e-04

Joint ci ratio: 9.153965e-02	ci left: 9.398508e-04	ci right 1.030532e-03	k: 1831	n:1860000
Cons ci ratio: 1.352223e-01	ci left: 4.210716e-04	ci right 4.826517e-04	k: 839	n:1860000
KS ci ratio: 3.902208e-03	ci left: 3.510352e-01	ci right 3.524082e-01	k: 654202	n:1860000
LYPLA1   1860000 perm   1560 sec   (1193 perm/sec)   p_kst 3.517215e-01   p_cons 4.510753e-04   p_joint 9.844086e-04

Joint ci ratio: 9.121650e-02	ci left: 9.416179e-04	ci right 1.032131e-03	k: 1844	n:1870000
Cons ci ratio: 1.349015e-01	ci left: 4.208867e-04	ci right 4.822819e-04	k: 843	n:1870000
KS ci ratio: 3.891351e-03	ci left: 3.510851e-01	ci right 3.524544e-01	k: 657809	n:1870000
LYPLA1   1870000 perm   1575 sec   (1188 perm/sec)   p_kst 3.517695e-01   p_cons 4.508021e-04   p_joint 9.860963e-04

Joint ci ratio: 9.109327e-02	ci left: 9.392082e-04	ci right 1.029362e-03	k: 1849	n:1880000
Cons ci ratio: 1.348218e-01	ci left: 4.191618e-04	ci right 4.802665e-04	k: 844	n:1880000
KS ci ratio: 3.880588e-03	ci left: 3.511338e-01	ci right 3.524996e-01	k: 661415	n:1880000
LYPLA1   1880000 perm   1590 sec   (1182 perm/sec)   p_kst 3.518165e-01   p_cons 4.489362e-04   p_joint 9.835106e-04

Joint ci ratio: 9.087252e-02	ci left: 9.388924e-04	ci right 1.028786e-03	k: 1858	n:1890000
Cons ci ratio: 1.346626e-01	ci left: 4.179666e-04	ci right 4.788193e-04	k: 846	n:1890000
KS ci ratio: 3.870076e-03	ci left: 3.511631e-01	ci right 3.525252e-01	k: 664985	n:1890000
LYPLA1   1890000 perm   1605 sec   (1177 perm/sec)   p_kst 3.518439e-01   p_cons 4.476190e-04   p_joint 9.830688e-04

Joint ci ratio: 9.067766e-02	ci left: 9.380657e-04	ci right 1.027677e-03	k: 1866	n:1900000
Cons ci ratio: 1.345833e-01	ci left: 4.162753e-04	ci right 4.768432e-04	k: 847	n:1900000
KS ci ratio: 3.859844e-03	ci left: 3.511688e-01	ci right 3.525274e-01	k: 668511	n:1900000
LYPLA1   1900000 perm   1621 sec   (1172 perm/sec)   p_kst 3.518479e-01   p_cons 4.457895e-04   p_joint 9.821053e-04

Joint ci ratio: 9.038760e-02	ci left: 9.392949e-04	ci right 1.028721e-03	k: 1878	n:1910000
Cons ci ratio: 1.343459e-01	ci left: 4.156137e-04	ci right 4.759702e-04	k: 850	n:1910000
KS ci ratio: 3.849494e-03	ci left: 3.511981e-01	ci right 3.525531e-01	k: 672082	n:1910000
LYPLA1   1910000 perm   1636 sec   (1167 perm/sec)   p_kst 3.518754e-01   p_cons 4.450262e-04   p_joint 9.832461e-04

Joint ci ratio: 9.007646e-02	ci left: 9.410208e-04	ci right 1.030287e-03	k: 1891	n:1920000
Cons ci ratio: 1.339529e-01	ci left: 4.159658e-04	ci right 4.761826e-04	k: 855	n:1920000
KS ci ratio: 3.839377e-03	ci left: 3.512094e-01	ci right 3.525609e-01	k: 675619	n:1920000
LYPLA1   1920000 perm   1652 sec   (1162 perm/sec)   p_kst 3.518849e-01   p_cons 4.453125e-04   p_joint 9.848958e-04

Joint ci ratio: 8.986300e-02	ci left: 9.407034e-04	ci right 1.029717e-03	k: 1900	n:1930000
Cons ci ratio: 1.337189e-01	ci left: 4.153129e-04	ci right 4.753218e-04	k: 858	n:1930000
KS ci ratio: 3.829364e-03	ci left: 3.512174e-01	ci right 3.525654e-01	k: 679150	n:1930000
LYPLA1   1930000 perm   1667 sec   (1158 perm/sec)   p_kst 3.518912e-01   p_cons 4.445596e-04   p_joint 9.844560e-04

Joint ci ratio: 8.960410e-02	ci left: 9.413973e-04	ci right 1.030206e-03	k: 1911	n:1940000
Cons ci ratio: 1.334086e-01	ci left: 4.151651e-04	ci right 4.750024e-04	k: 862	n:1940000
KS ci ratio: 3.819745e-03	ci left: 3.511878e-01	ci right 3.525323e-01	k: 682608	n:1940000
LYPLA1   1940000 perm   1683 sec   (1153 perm/sec)   p_kst 3.518598e-01   p_cons 4.443299e-04   p_joint 9.850515e-04

Joint ci ratio: 7.215517e-02	ci left: 1.456741e-03	ci right 1.566286e-03	k: 2946	n:1950000
Cons ci ratio: 1.327944e-01	ci left: 4.170020e-04	ci right 4.768056e-04	k: 870	n:1950000
KS ci ratio: 3.809800e-03	ci left: 3.512061e-01	ci right 3.525472e-01	k: 686159	n:1950000
LYPLA1   1950000 perm   1699 sec   (1148 perm/sec)   p_kst 3.518764e-01   p_cons 4.461538e-04   p_joint 1.510769e-03

Joint ci ratio: 7.196008e-02	ci left: 1.457325e-03	ci right 1.566605e-03	k: 2962	n:1960000
Cons ci ratio: 1.324149e-01	ci left: 4.173408e-04	ci right 4.770085e-04	k: 875	n:1960000
KS ci ratio: 3.800012e-03	ci left: 3.512146e-01	ci right 3.525522e-01	k: 689691	n:1960000
LYPLA1   1960000 perm   1714 sec   (1143 perm/sec)   p_kst 3.518832e-01   p_cons 4.464286e-04   p_joint 1.511224e-03

Joint ci ratio: 7.180277e-02	ci left: 1.456408e-03	ci right 1.565371e-03	k: 2975	n:1970000
Cons ci ratio: 1.322641e-01	ci left: 4.162040e-04	ci right 4.756359e-04	k: 877	n:1970000
KS ci ratio: 3.790207e-03	ci left: 3.512341e-01	ci right 3.525684e-01	k: 693245	n:1970000
LYPLA1   1970000 perm   1730 sec   (1139 perm/sec)   p_kst 3.519010e-01   p_cons 4.451777e-04   p_joint 1.510152e-03

Joint ci ratio: 7.167051e-02	ci left: 1.454508e-03	ci right 1.563120e-03	k: 2986	n:1980000
Cons ci ratio: 1.318144e-01	ci left: 4.170321e-04	ci right 4.763641e-04	k: 883	n:1980000
KS ci ratio: 3.780753e-03	ci left: 3.512201e-01	ci right 3.525510e-01	k: 696733	n:1980000
LYPLA1   1980000 perm   1746 sec   (1134 perm/sec)   p_kst 3.518854e-01   p_cons 4.459596e-04   p_joint 1.508081e-03

Joint ci ratio: 7.150316e-02	ci left: 1.454108e-03	ci right 1.562426e-03	k: 3000	n:1990000
Cons ci ratio: 1.315913e-01	ci left: 4.163944e-04	ci right 4.755275e-04	k: 886	n:1990000
KS ci ratio: 3.771162e-03	ci left: 3.512314e-01	ci right 3.525590e-01	k: 700271	n:1990000
LYPLA1   1990000 perm   1762 sec   (1130 perm/sec)   p_kst 3.518950e-01   p_cons 4.452261e-04   p_joint 1.507538e-03

Joint ci ratio: 7.127781e-02	ci left: 1.456168e-03	ci right 1.564284e-03	k: 3019	n:2000000
Cons ci ratio: 1.312957e-01	ci left: 4.162466e-04	ci right 4.752156e-04	k: 890	n:2000000
KS ci ratio: 3.761677e-03	ci left: 3.512386e-01	ci right 3.525628e-01	k: 703801	n:2000000
LYPLA1   2000000 perm   1778 sec   (1125 perm/sec)   p_kst 3.519005e-01   p_cons 4.450000e-04   p_joint 1.509500e-03

Joint ci ratio: 8.798533e-02	ci left: 9.431514e-04	ci right 1.030436e-03	k: 1982	n:2010000
Cons ci ratio: 1.309288e-01	ci left: 4.165817e-04	ci right 4.754204e-04	k: 895	n:2010000
KS ci ratio: 3.752144e-03	ci left: 3.512601e-01	ci right 3.525811e-01	k: 707360	n:2010000
LYPLA1   2010000 perm   1794 sec   (1120 perm/sec)   p_kst 3.519204e-01   p_cons 4.452736e-04   p_joint 9.860697e-04

Joint ci ratio: 8.778636e-02	ci left: 9.428398e-04	ci right 1.029888e-03	k: 1991	n:2020000
Cons ci ratio: 1.306375e-01	ci left: 4.164349e-04	ci right 4.751118e-04	k: 899	n:2020000
KS ci ratio: 3.742923e-03	ci left: 3.512523e-01	ci right 3.525699e-01	k: 710860	n:2020000
LYPLA1   2020000 perm   1810 sec   (1116 perm/sec)   p_kst 3.519109e-01   p_cons 4.450495e-04   p_joint 9.856436e-04

Joint ci ratio: 8.765453e-02	ci left: 9.410861e-04	ci right 1.027835e-03	k: 1997	n:2030000
Cons ci ratio: 1.303482e-01	ci left: 4.162896e-04	ci right 4.748061e-04	k: 903	n:2030000
KS ci ratio: 3.733891e-03	ci left: 3.512297e-01	ci right 3.525441e-01	k: 714330	n:2030000
LYPLA1   2030000 perm   1826 sec   (1111 perm/sec)   p_kst 3.518867e-01   p_cons 4.448276e-04   p_joint 9.837438e-04

Joint ci ratio: 8.752330e-02	ci left: 9.393496e-04	ci right 1.025803e-03	k: 2003	n:2040000
Cons ci ratio: 1.301325e-01	ci left: 4.156716e-04	ci right 4.739971e-04	k: 906	n:2040000
KS ci ratio: 3.724667e-03	ci left: 3.512388e-01	ci right 3.525499e-01	k: 717864	n:2040000
LYPLA1   2040000 perm   1843 sec   (1107 perm/sec)   p_kst 3.518941e-01   p_cons 4.441176e-04   p_joint 9.818627e-04

Joint ci ratio: 8.726238e-02	ci left: 9.404932e-04	ci right 1.026780e-03	k: 2015	n:2050000
Cons ci ratio: 1.296331e-01	ci left: 4.169476e-04	ci right 4.752104e-04	k: 913	n:2050000
KS ci ratio: 3.715731e-03	ci left: 3.512209e-01	ci right 3.525288e-01	k: 721343	n:2050000
LYPLA1   2050000 perm   1859 sec   (1103 perm/sec)   p_kst 3.518746e-01   p_cons 4.453659e-04   p_joint 9.829268e-04

Joint ci ratio: 8.702526e-02	ci left: 9.411512e-04	ci right 1.027252e-03	k: 2026	n:2060000
Cons ci ratio: 1.294210e-01	ci left: 4.163327e-04	ci right 4.744070e-04	k: 916	n:2060000
KS ci ratio: 3.706830e-03	ci left: 3.512066e-01	ci right 3.525113e-01	k: 724829	n:2060000
LYPLA1   2060000 perm   1875 sec   (1099 perm/sec)   p_kst 3.518587e-01   p_cons 4.446602e-04   p_joint 9.834951e-04

Joint ci ratio: 8.681138e-02	ci left: 9.413305e-04	ci right 1.027225e-03	k: 2036	n:2070000
Cons ci ratio: 1.289996e-01	ci left: 4.171263e-04	ci right 4.751074e-04	k: 922	n:2070000
KS ci ratio: 3.698071e-03	ci left: 3.511828e-01	ci right 3.524843e-01	k: 728295	n:2070000
LYPLA1   2070000 perm   1892 sec   (1094 perm/sec)   p_kst 3.518333e-01   p_cons 4.454106e-04   p_joint 9.835749e-04

Joint ci ratio: 8.653562e-02	ci left: 9.429194e-04	ci right 1.028672e-03	k: 2049	n:2080000
Cons ci ratio: 1.287905e-01	ci left: 4.165167e-04	ci right 4.743120e-04	k: 925	n:2080000
KS ci ratio: 3.689052e-03	ci left: 3.511991e-01	ci right 3.524975e-01	k: 731844	n:2080000
LYPLA1   2080000 perm   1908 sec   (1090 perm/sec)   p_kst 3.518481e-01   p_cons 4.447115e-04   p_joint 9.850962e-04

Joint ci ratio: 8.634631e-02	ci left: 9.426209e-04	ci right 1.028149e-03	k: 2058	n:2090000
Cons ci ratio: 1.285132e-01	ci left: 4.163761e-04	ci right 4.740180e-04	k: 929	n:2090000
KS ci ratio: 3.680303e-03	ci left: 3.511899e-01	ci right 3.524852e-01	k: 735340	n:2090000
LYPLA1   2090000 perm   1925 sec   (1086 perm/sec)   p_kst 3.518373e-01   p_cons 4.444976e-04   p_joint 9.846890e-04

Joint ci ratio: 8.611655e-02	ci left: 9.432574e-04	ci right 1.028604e-03	k: 2069	n:2100000
Cons ci ratio: 1.283065e-01	ci left: 4.157760e-04	ci right 4.732352e-04	k: 932	n:2100000
KS ci ratio: 3.671477e-03	ci left: 3.511979e-01	ci right 3.524901e-01	k: 738872	n:2100000
LYPLA1   2100000 perm   1941 sec   (1082 perm/sec)   p_kst 3.518438e-01   p_cons 4.438095e-04   p_joint 9.852381e-04

Joint ci ratio: 8.582672e-02	ci left: 9.452795e-04	ci right 1.030507e-03	k: 2083	n:2110000
Cons ci ratio: 1.280324e-01	ci left: 4.156405e-04	ci right 4.729489e-04	k: 936	n:2110000
KS ci ratio: 3.662685e-03	ci left: 3.512096e-01	ci right 3.524988e-01	k: 742412	n:2110000
LYPLA1   2110000 perm   1958 sec   (1078 perm/sec)   p_kst 3.518540e-01   p_cons 4.436019e-04   p_joint 9.872038e-04

Joint ci ratio: 6.915761e-02	ci left: 1.460866e-03	ci right 1.565975e-03	k: 3207	n:2120000
Cons ci ratio: 1.276921e-01	ci left: 4.159630e-04	ci right 4.731519e-04	k: 941	n:2120000
KS ci ratio: 3.654019e-03	ci left: 3.512133e-01	ci right 3.524994e-01	k: 745935	n:2120000
LYPLA1   2120000 perm   1975 sec   (1073 perm/sec)   p_kst 3.518561e-01   p_cons 4.438679e-04   p_joint 1.512736e-03

Joint ci ratio: 6.905015e-02	ci left: 1.458621e-03	ci right 1.563399e-03	k: 3217	n:2130000
Cons ci ratio: 1.276922e-01	ci left: 4.140101e-04	ci right 4.709306e-04	k: 941	n:2130000
KS ci ratio: 3.645321e-03	ci left: 3.512286e-01	ci right 3.525117e-01	k: 749483	n:2130000
LYPLA1   2130000 perm   1992 sec   (1069 perm/sec)   p_kst 3.518700e-01   p_cons 4.417840e-04   p_joint 1.510329e-03

Joint ci ratio: 6.890045e-02	ci left: 1.458235e-03	ci right 1.562748e-03	k: 3231	n:2140000
Cons ci ratio: 1.273547e-01	ci left: 4.143373e-04	ci right 4.711409e-04	k: 946	n:2140000
KS ci ratio: 3.636711e-03	ci left: 3.512405e-01	ci right 3.525206e-01	k: 753024	n:2140000
LYPLA1   2140000 perm   2009 sec   (1065 perm/sec)   p_kst 3.518804e-01   p_cons 4.420561e-04   p_joint 1.509813e-03

Joint ci ratio: 6.870934e-02	ci left: 1.459680e-03	ci right 1.563995e-03	k: 3249	n:2150000
Cons ci ratio: 1.270866e-01	ci left: 4.142115e-04	ci right 4.708692e-04	k: 950	n:2150000
KS ci ratio: 3.628177e-03	ci left: 3.512505e-01	ci right 3.525276e-01	k: 756561	n:2150000
LYPLA1   2150000 perm   2026 sec   (1061 perm/sec)   p_kst 3.518888e-01   p_cons 4.418605e-04   p_joint 1.511163e-03

Joint ci ratio: 6.856185e-02	ci left: 1.459293e-03	ci right 1.563347e-03	k: 3263	n:2160000
Cons ci ratio: 1.268866e-01	ci left: 4.136386e-04	ci right 4.701222e-04	k: 953	n:2160000
KS ci ratio: 3.619731e-03	ci left: 3.512566e-01	ci right 3.525308e-01	k: 760090	n:2160000
LYPLA1   2160000 perm   2042 sec   (1058 perm/sec)   p_kst 3.518935e-01   p_cons 4.412037e-04   p_joint 1.510648e-03

Joint ci ratio: 8.463701e-02	ci left: 9.457522e-04	ci right 1.029782e-03	k: 2142	n:2170000
Cons ci ratio: 1.266215e-01	ci left: 4.135173e-04	ci right 4.698575e-04	k: 957	n:2170000
KS ci ratio: 3.611644e-03	ci left: 3.512250e-01	ci right 3.524962e-01	k: 763537	n:2170000
LYPLA1   2170000 perm   2060 sec   (1053 perm/sec)   p_kst 3.518604e-01   p_cons 4.410138e-04   p_joint 9.870968e-04

Joint ci ratio: 6.823855e-02	ci left: 1.459882e-03	ci right 1.563468e-03	k: 3294	n:2180000
Cons ci ratio: 1.260307e-01	ci left: 4.156184e-04	ci right 4.719610e-04	k: 966	n:2180000
KS ci ratio: 3.603414e-03	ci left: 3.512183e-01	ci right 3.524866e-01	k: 767038	n:2180000
LYPLA1   2180000 perm   2077 sec   (1050 perm/sec)   p_kst 3.518523e-01   p_cons 4.431193e-04   p_joint 1.511009e-03

Joint ci ratio: 6.810437e-02	ci left: 1.459050e-03	ci right 1.562366e-03	k: 3307	n:2190000
Cons ci ratio: 1.257061e-01	ci left: 4.159318e-04	ci right 4.721609e-04	k: 971	n:2190000
KS ci ratio: 3.595443e-03	ci left: 3.511862e-01	ci right 3.524516e-01	k: 770483	n:2190000
LYPLA1   2190000 perm   2095 sec   (1045 perm/sec)   p_kst 3.518187e-01   p_cons 4.433790e-04   p_joint 1.510046e-03

Joint ci ratio: 6.794025e-02	ci left: 1.459567e-03	ci right 1.562661e-03	k: 3323	n:2200000
Cons ci ratio: 1.253840e-01	ci left: 4.162426e-04	ci right 4.723587e-04	k: 976	n:2200000
KS ci ratio: 3.587409e-03	ci left: 3.511690e-01	ci right 3.524314e-01	k: 773960	n:2200000
LYPLA1   2200000 perm   2113 sec   (1041 perm/sec)   p_kst 3.518000e-01   p_cons 4.436364e-04   p_joint 1.510455e-03

Joint ci ratio: 6.784855e-02	ci left: 1.456966e-03	ci right 1.559732e-03	k: 3332	n:2210000
Cons ci ratio: 1.251920e-01	ci left: 4.156741e-04	ci right 4.716214e-04	k: 979	n:2210000
KS ci ratio: 3.579337e-03	ci left: 3.511636e-01	ci right 3.524232e-01	k: 777463	n:2210000
LYPLA1   2210000 perm   2131 sec   (1037 perm/sec)   p_kst 3.517932e-01   p_cons 4.429864e-04   p_joint 1.507692e-03

Joint ci ratio: 6.769639e-02	ci left: 1.457046e-03	ci right 1.559577e-03	k: 3347	n:2220000
Cons ci ratio: 1.248738e-01	ci left: 4.159835e-04	ci right 4.718196e-04	k: 984	n:2220000
KS ci ratio: 3.571287e-03	ci left: 3.511623e-01	ci right 3.524191e-01	k: 780975	n:2220000
LYPLA1   2220000 perm   2148 sec   (1034 perm/sec)   p_kst 3.517905e-01   p_cons 4.432432e-04   p_joint 1.507658e-03

Joint ci ratio: 6.743489e-02	ci left: 1.461974e-03	ci right 1.564440e-03	k: 3373	n:2230000
Cons ci ratio: 1.244952e-01	ci left: 4.167247e-04	ci right 4.724783e-04	k: 990	n:2230000
KS ci ratio: 3.563207e-03	ci left: 3.511719e-01	ci right 3.524258e-01	k: 784511	n:2230000
LYPLA1   2230000 perm   2165 sec   (1030 perm/sec)   p_kst 3.517987e-01   p_cons 4.439462e-04   p_joint 1.512556e-03

Joint ci ratio: 6.724575e-02	ci left: 1.463787e-03	ci right 1.566080e-03	k: 3392	n:2240000
Cons ci ratio: 1.243072e-01	ci left: 4.161620e-04	ci right 4.717499e-04	k: 993	n:2240000
KS ci ratio: 3.555415e-03	ci left: 3.511514e-01	ci right 3.524025e-01	k: 787980	n:2240000
LYPLA1   2240000 perm   2183 sec   (1026 perm/sec)   p_kst 3.517768e-01   p_cons 4.433036e-04   p_joint 1.514286e-03

Joint ci ratio: 6.712720e-02	ci left: 1.462525e-03	ci right 1.564543e-03	k: 3404	n:2250000
Cons ci ratio: 1.239957e-01	ci left: 4.164656e-04	ci right 4.719445e-04	k: 998	n:2250000
KS ci ratio: 3.547532e-03	ci left: 3.511493e-01	ci right 3.523977e-01	k: 791490	n:2250000
LYPLA1   2250000 perm   2200 sec   (1023 perm/sec)   p_kst 3.517733e-01   p_cons 4.435556e-04   p_joint 1.512889e-03

Joint ci ratio: 6.697983e-02	ci left: 1.462579e-03	ci right 1.564369e-03	k: 3419	n:2260000
Cons ci ratio: 1.237483e-01	ci left: 4.163379e-04	ci right 4.716810e-04	k: 1002	n:2260000
KS ci ratio: 3.539595e-03	ci left: 3.511610e-01	ci right 3.524066e-01	k: 795031	n:2260000
LYPLA1   2260000 perm   2218 sec   (1019 perm/sec)   p_kst 3.517836e-01   p_cons 4.433628e-04   p_joint 1.512832e-03

Joint ci ratio: 8.271033e-02	ci left: 9.476517e-04	ci right 1.029841e-03	k: 2243	n:2270000
Cons ci ratio: 1.235636e-01	ci left: 4.157845e-04	ci right 4.709655e-04	k: 1005	n:2270000
KS ci ratio: 3.532022e-03	ci left: 3.511325e-01	ci right 3.523753e-01	k: 798481	n:2270000
LYPLA1   2270000 perm   2236 sec   (1015 perm/sec)   p_kst 3.517537e-01   p_cons 4.427313e-04   p_joint 9.881057e-04

Joint ci ratio: 6.672674e-02	ci left: 1.460962e-03	ci right 1.562240e-03	k: 3445	n:2280000
Cons ci ratio: 1.234411e-01	ci left: 4.148109e-04	ci right 4.698042e-04	k: 1007	n:2280000
KS ci ratio: 3.524419e-03	ci left: 3.511144e-01	ci right 3.523544e-01	k: 801954	n:2280000
LYPLA1   2280000 perm   2253 sec   (1012 perm/sec)   p_kst 3.517342e-01   p_cons 4.416667e-04   p_joint 1.510965e-03

Joint ci ratio: 6.655310e-02	ci left: 1.462312e-03	ci right 1.563409e-03	k: 3463	n:2290000
Cons ci ratio: 1.231969e-01	ci left: 4.146924e-04	ci right 4.695532e-04	k: 1011	n:2290000
KS ci ratio: 3.516649e-03	ci left: 3.511243e-01	ci right 3.523617e-01	k: 805491	n:2290000
LYPLA1   2290000 perm   2272 sec   (1008 perm/sec)   p_kst 3.517428e-01   p_cons 4.414847e-04   p_joint 1.512227e-03

Joint ci ratio: 6.643817e-02	ci left: 1.461085e-03	ci right 1.561916e-03	k: 3475	n:2300000
Cons ci ratio: 1.228333e-01	ci left: 4.154178e-04	ci right 4.702006e-04	k: 1017	n:2300000
KS ci ratio: 3.509194e-03	ci left: 3.510998e-01	ci right 3.523345e-01	k: 808949	n:2300000
LYPLA1   2300000 perm   2290 sec   (1004 perm/sec)   p_kst 3.517170e-01   p_cons 4.421739e-04   p_joint 1.510870e-03

Joint ci ratio: 6.624779e-02	ci left: 1.463274e-03	ci right 1.563956e-03	k: 3495	n:2310000
Cons ci ratio: 1.226527e-01	ci left: 4.148783e-04	ci right 4.695037e-04	k: 1020	n:2310000
KS ci ratio: 3.501727e-03	ci left: 3.510833e-01	ci right 3.523153e-01	k: 812425	n:2310000
LYPLA1   2310000 perm   2308 sec   (1001 perm/sec)   p_kst 3.516991e-01   p_cons 4.415584e-04   p_joint 1.512987e-03

Joint ci ratio: 6.611555e-02	ci left: 1.462902e-03	ci right 1.563349e-03	k: 3509	n:2320000
Cons ci ratio: 1.224132e-01	ci left: 4.147613e-04	ci right 4.692569e-04	k: 1024	n:2320000
KS ci ratio: 3.494437e-03	ci left: 3.510502e-01	ci right 3.522795e-01	k: 815862	n:2320000
LYPLA1   2320000 perm   2326 sec   (997 perm/sec)   p_kst 3.516647e-01   p_cons 4.413793e-04   p_joint 1.512500e-03

Joint ci ratio: 8.155543e-02	ci left: 9.501524e-04	ci right 1.031354e-03	k: 2307	n:2330000
Cons ci ratio: 1.221750e-01	ci left: 4.146454e-04	ci right 4.690121e-04	k: 1028	n:2330000
KS ci ratio: 3.486755e-03	ci left: 3.510744e-01	ci right 3.523011e-01	k: 819432	n:2330000
LYPLA1   2330000 perm   2345 sec   (994 perm/sec)   p_kst 3.516876e-01   p_cons 4.412017e-04   p_joint 9.901288e-04

Joint ci ratio: 8.139689e-02	ci left: 9.498597e-04	ci right 1.030871e-03	k: 2316	n:2340000
Cons ci ratio: 1.219382e-01	ci left: 4.145306e-04	ci right 4.687694e-04	k: 1032	n:2340000
KS ci ratio: 3.479404e-03	ci left: 3.510617e-01	ci right 3.522857e-01	k: 822916	n:2340000
LYPLA1   2340000 perm   2363 sec   (990 perm/sec)   p_kst 3.516735e-01   p_cons 4.410256e-04   p_joint 9.897436e-04

Joint ci ratio: 8.113460e-02	ci left: 9.520710e-04	ci right 1.032997e-03	k: 2331	n:2350000
Cons ci ratio: 1.215856e-01	ci left: 4.152421e-04	ci right 4.694055e-04	k: 1038	n:2350000
KS ci ratio: 3.471888e-03	ci left: 3.510767e-01	ci right 3.522981e-01	k: 826465	n:2350000
LYPLA1   2350000 perm   2381 sec   (987 perm/sec)   p_kst 3.516872e-01   p_cons 4.417021e-04   p_joint 9.919149e-04

Joint ci ratio: 6.546585e-02	ci left: 1.467280e-03	ci right 1.567001e-03	k: 3579	n:2360000
Cons ci ratio: 1.212941e-01	ci left: 4.155369e-04	ci right 4.695995e-04	k: 1043	n:2360000
KS ci ratio: 3.464666e-03	ci left: 3.510594e-01	ci right 3.522782e-01	k: 829938	n:2360000
LYPLA1   2360000 perm   2400 sec   (983 perm/sec)   p_kst 3.516686e-01   p_cons 4.419492e-04   p_joint 1.516525e-03

Joint ci ratio: 6.533823e-02	ci left: 1.466899e-03	ci right 1.566393e-03	k: 3593	n:2370000
Cons ci ratio: 1.210624e-01	ci left: 4.154202e-04	ci right 4.693570e-04	k: 1047	n:2370000
KS ci ratio: 3.457431e-03	ci left: 3.510499e-01	ci right 3.522661e-01	k: 833429	n:2370000
LYPLA1   2370000 perm   2419 sec   (980 perm/sec)   p_kst 3.516578e-01   p_cons 4.417722e-04   p_joint 1.516034e-03

Joint ci ratio: 6.521136e-02	ci left: 1.466522e-03	ci right 1.565789e-03	k: 3607	n:2380000
Cons ci ratio: 1.208320e-01	ci left: 4.153046e-04	ci right 4.691164e-04	k: 1051	n:2380000
KS ci ratio: 3.450069e-03	ci left: 3.510631e-01	ci right 3.522768e-01	k: 836974	n:2380000
LYPLA1   2380000 perm   2437 sec   (977 perm/sec)   p_kst 3.516697e-01   p_cons 4.415966e-04   p_joint 1.515546e-03

Joint ci ratio: 8.046457e-02	ci left: 9.521251e-04	ci right 1.032356e-03	k: 2370	n:2390000
Cons ci ratio: 1.204889e-01	ci left: 4.160016e-04	ci right 4.697397e-04	k: 1057	n:2390000
KS ci ratio: 3.442938e-03	ci left: 3.510519e-01	ci right 3.522631e-01	k: 840461	n:2390000
LYPLA1   2390000 perm   2456 sec   (973 perm/sec)   p_kst 3.516573e-01   p_cons 4.422594e-04   p_joint 9.916318e-04

Joint ci ratio: 8.029541e-02	ci left: 9.522408e-04	ci right 1.032304e-03	k: 2380	n:2400000
Cons ci ratio: 1.203185e-01	ci left: 4.154806e-04	ci right 4.690701e-04	k: 1060	n:2400000
KS ci ratio: 3.435728e-03	ci left: 3.510571e-01	ci right 3.522657e-01	k: 843987	n:2400000
LYPLA1   2400000 perm   2475 sec   (970 perm/sec)   p_kst 3.516612e-01   p_cons 4.416667e-04   p_joint 9.916667e-04

Joint ci ratio: 8.012733e-02	ci left: 9.523558e-04	ci right 1.032254e-03	k: 2390	n:2410000
Cons ci ratio: 1.200359e-01	ci left: 4.157689e-04	ci right 4.692608e-04	k: 1065	n:2410000
KS ci ratio: 3.428751e-03	ci left: 3.510374e-01	ci right 3.522435e-01	k: 847453	n:2410000
LYPLA1   2410000 perm   2494 sec   (966 perm/sec)   p_kst 3.516402e-01   p_cons 4.419087e-04   p_joint 9.917012e-04

Joint ci ratio: 7.996029e-02	ci left: 9.524699e-04	ci right 1.032203e-03	k: 2400	n:2420000
Cons ci ratio: 1.196437e-01	ci left: 4.168567e-04	ci right 4.703009e-04	k: 1072	n:2420000
KS ci ratio: 3.421701e-03	ci left: 3.510331e-01	ci right 3.522367e-01	k: 850956	n:2420000
LYPLA1   2420000 perm   2514 sec   (963 perm/sec)   p_kst 3.516347e-01   p_cons 4.429752e-04   p_joint 9.917355e-04

Joint ci ratio: 7.981086e-02	ci left: 9.521800e-04	ci right 1.031733e-03	k: 2409	n:2430000
Cons ci ratio: 1.192553e-01	ci left: 4.179359e-04	ci right 4.713322e-04	k: 1079	n:2430000
KS ci ratio: 3.414663e-03	ci left: 3.510330e-01	ci right 3.522341e-01	k: 854469	n:2430000
LYPLA1   2430000 perm   2533 sec   (960 perm/sec)   p_kst 3.516333e-01   p_cons 4.440329e-04   p_joint 9.913580e-04

Joint ci ratio: 6.446535e-02	ci left: 1.464328e-03	ci right 1.562271e-03	k: 3691	n:2440000
Cons ci ratio: 1.190900e-01	ci left: 4.174159e-04	ci right 4.706666e-04	k: 1082	n:2440000
KS ci ratio: 3.407458e-03	ci left: 3.510611e-01	ci right 3.522597e-01	k: 858051	n:2440000
LYPLA1   2440000 perm   2552 sec   (956 perm/sec)   p_kst 3.516602e-01   p_cons 4.434426e-04   p_joint 1.512705e-03

Joint ci ratio: 6.436088e-02	ci left: 1.463170e-03	ci right 1.560871e-03	k: 3703	n:2450000
Cons ci ratio: 1.188707e-01	ci left: 4.172962e-04	ci right 4.704268e-04	k: 1086	n:2450000
KS ci ratio: 3.400374e-03	ci left: 3.510788e-01	ci right 3.522750e-01	k: 861608	n:2450000
LYPLA1   2450000 perm   2571 sec   (953 perm/sec)   p_kst 3.516767e-01   p_cons 4.432653e-04   p_joint 1.511429e-03

Joint ci ratio: 6.427424e-02	ci left: 1.461222e-03	ci right 1.558656e-03	k: 3713	n:2460000
Cons ci ratio: 1.186526e-01	ci left: 4.171776e-04	ci right 4.701888e-04	k: 1090	n:2460000
KS ci ratio: 3.393388e-03	ci left: 3.510891e-01	ci right 3.522828e-01	k: 865147	n:2460000
LYPLA1   2460000 perm   2590 sec   (950 perm/sec)   p_kst 3.516858e-01   p_cons 4.430894e-04   p_joint 1.509350e-03

Joint ci ratio: 6.414484e-02	ci left: 1.461282e-03	ci right 1.558517e-03	k: 3728	n:2470000
Cons ci ratio: 1.185441e-01	ci left: 4.162743e-04	ci right 4.691189e-04	k: 1092	n:2470000
KS ci ratio: 3.386887e-03	ci left: 3.510397e-01	ci right 3.522311e-01	k: 868539	n:2470000
LYPLA1   2470000 perm   2610 sec   (946 perm/sec)   p_kst 3.516352e-01   p_cons 4.421053e-04   p_joint 1.509312e-03

Joint ci ratio: 6.402478e-02	ci left: 1.460944e-03	ci right 1.557968e-03	k: 3742	n:2480000
Cons ci ratio: 1.182738e-01	ci left: 4.165522e-04	ci right 4.693031e-04	k: 1097	n:2480000
KS ci ratio: 3.379975e-03	ci left: 3.510513e-01	ci right 3.522402e-01	k: 872081	n:2480000
LYPLA1   2480000 perm   2630 sec   (943 perm/sec)   p_kst 3.516456e-01   p_cons 4.423387e-04   p_joint 1.508871e-03

Joint ci ratio: 6.390539e-02	ci left: 1.460609e-03	ci right 1.557423e-03	k: 3756	n:2490000
Cons ci ratio: 1.180054e-01	ci left: 4.168280e-04	ci right 4.694857e-04	k: 1102	n:2490000
KS ci ratio: 3.373299e-03	ci left: 3.510366e-01	ci right 3.522232e-01	k: 875558	n:2490000
LYPLA1   2490000 perm   2649 sec   (940 perm/sec)   p_kst 3.516297e-01   p_cons 4.425703e-04   p_joint 1.508434e-03

Joint ci ratio: 6.383755e-02	ci left: 1.457916e-03	ci right 1.554445e-03	k: 3764	n:2500000
Cons ci ratio: 1.179521e-01	ci left: 4.155489e-04	ci right 4.680196e-04	k: 1103	n:2500000
KS ci ratio: 3.366446e-03	ci left: 3.510513e-01	ci right 3.522355e-01	k: 879108	n:2500000
LYPLA1   2500000 perm   2669 sec   (937 perm/sec)   p_kst 3.516432e-01   p_cons 4.412000e-04   p_joint 1.505600e-03

Joint ci ratio: 6.373610e-02	ci left: 1.456812e-03	ci right 1.553109e-03	k: 3776	n:2510000
Cons ci ratio: 1.177390e-01	ci left: 4.154399e-04	ci right 4.677955e-04	k: 1107	n:2510000
KS ci ratio: 3.359761e-03	ci left: 3.510487e-01	ci right 3.522305e-01	k: 882615	n:2510000
LYPLA1   2510000 perm   2689 sec   (934 perm/sec)   p_kst 3.516394e-01   p_cons 4.410359e-04   p_joint 1.504382e-03

Joint ci ratio: 7.855002e-02	ci left: 9.485131e-04	ci right 1.026450e-03	k: 2487	n:2520000
Cons ci ratio: 1.174742e-01	ci left: 4.157171e-04	ci right 4.679817e-04	k: 1112	n:2520000
KS ci ratio: 3.352774e-03	ci left: 3.510926e-01	ci right 3.522721e-01	k: 886239	n:2520000
LYPLA1   2520000 perm   2709 sec   (930 perm/sec)   p_kst 3.516821e-01   p_cons 4.412698e-04   p_joint 9.869048e-04

Joint ci ratio: 7.840835e-02	ci left: 9.482515e-04	ci right 1.026020e-03	k: 2496	n:2530000
Cons ci ratio: 1.173688e-01	ci left: 4.148413e-04	ci right 4.669457e-04	k: 1114	n:2530000
KS ci ratio: 3.346315e-03	ci left: 3.510701e-01	ci right 3.522472e-01	k: 889696	n:2530000
LYPLA1   2530000 perm   2728 sec   (927 perm/sec)   p_kst 3.516585e-01   p_cons 4.403162e-04   p_joint 9.865613e-04

Joint ci ratio: 7.820498e-02	ci left: 9.495361e-04	ci right 1.027199e-03	k: 2509	n:2540000
Cons ci ratio: 1.171589e-01	ci left: 4.147366e-04	ci right 4.667283e-04	k: 1118	n:2540000
KS ci ratio: 3.339982e-03	ci left: 3.510356e-01	ci right 3.522104e-01	k: 893122	n:2540000
LYPLA1   2540000 perm   2748 sec   (924 perm/sec)   p_kst 3.516228e-01   p_cons 4.401575e-04   p_joint 9.877953e-04

Joint ci ratio: 7.801868e-02	ci left: 9.504265e-04	ci right 1.027969e-03	k: 2521	n:2550000
Cons ci ratio: 1.170022e-01	ci left: 4.142522e-04	ci right 4.661089e-04	k: 1121	n:2550000
KS ci ratio: 3.333244e-03	ci left: 3.510618e-01	ci right 3.522343e-01	k: 896702	n:2550000
LYPLA1   2550000 perm   2767 sec   (921 perm/sec)   p_kst 3.516478e-01   p_cons 4.396078e-04   p_joint 9.886275e-04

Joint ci ratio: 7.786446e-02	ci left: 9.505440e-04	ci right 1.027936e-03	k: 2531	n:2560000
Cons ci ratio: 1.166906e-01	ci left: 4.149093e-04	ci right 4.667004e-04	k: 1127	n:2560000
KS ci ratio: 3.326666e-03	ci left: 3.510713e-01	ci right 3.522415e-01	k: 900240	n:2560000
LYPLA1   2560000 perm   2787 sec   (918 perm/sec)   p_kst 3.516563e-01   p_cons 4.402344e-04   p_joint 9.886719e-04

Joint ci ratio: 7.775709e-02	ci left: 9.495161e-04	ci right 1.026713e-03	k: 2538	n:2570000
Cons ci ratio: 1.164842e-01	ci left: 4.148059e-04	ci right 4.664862e-04	k: 1131	n:2570000
KS ci ratio: 3.320283e-03	ci left: 3.510594e-01	ci right 3.522273e-01	k: 903723	n:2570000
LYPLA1   2570000 perm   2807 sec   (916 perm/sec)   p_kst 3.516432e-01   p_cons 4.400778e-04   p_joint 9.875486e-04

Joint ci ratio: 7.760441e-02	ci left: 9.496365e-04	ci right 1.026684e-03	k: 2548	n:2580000
Cons ci ratio: 1.162790e-01	ci left: 4.147034e-04	ci right 4.662736e-04	k: 1135	n:2580000
KS ci ratio: 3.313902e-03	ci left: 3.510522e-01	ci right 3.522179e-01	k: 907218	n:2580000
LYPLA1   2580000 perm   2827 sec   (913 perm/sec)   p_kst 3.516349e-01   p_cons 4.399225e-04   p_joint 9.875969e-04

Joint ci ratio: 7.742235e-02	ci left: 9.505133e-04	ci right 1.027443e-03	k: 2560	n:2590000
Cons ci ratio: 1.158210e-01	ci left: 4.164763e-04	ci right 4.680490e-04	k: 1144	n:2590000
KS ci ratio: 3.307432e-03	ci left: 3.510625e-01	ci right 3.522259e-01	k: 910758	n:2590000
LYPLA1   2590000 perm   2847 sec   (910 perm/sec)   p_kst 3.516440e-01   p_cons 4.416988e-04   p_joint 9.884170e-04

Joint ci ratio: 7.718154e-02	ci left: 9.528925e-04	ci right 1.029764e-03	k: 2576	n:2600000
Cons ci ratio: 1.154184e-01	ci left: 4.178624e-04	ci right 4.694147e-04	k: 1152	n:2600000
KS ci ratio: 3.300872e-03	ci left: 3.510903e-01	ci right 3.522515e-01	k: 914344	n:2600000
LYPLA1   2600000 perm   2867 sec   (907 perm/sec)   p_kst 3.516708e-01   p_cons 4.430769e-04   p_joint 9.907692e-04

Joint ci ratio: 6.226923e-02	ci left: 1.468875e-03	ci right 1.563654e-03	k: 3956	n:2610000
Cons ci ratio: 1.152686e-01	ci left: 4.173777e-04	ci right 4.687987e-04	k: 1155	n:2610000
KS ci ratio: 3.294583e-03	ci left: 3.510858e-01	ci right 3.522448e-01	k: 917846	n:2610000
LYPLA1   2610000 perm   2887 sec   (904 perm/sec)   p_kst 3.516651e-01   p_cons 4.425287e-04   p_joint 1.515709e-03

Joint ci ratio: 6.215154e-02	ci left: 1.468905e-03	ci right 1.563500e-03	k: 3971	n:2620000
Cons ci ratio: 1.150201e-01	ci left: 4.176381e-04	ci right 4.689728e-04	k: 1160	n:2620000
KS ci ratio: 3.288490e-03	ci left: 3.510592e-01	ci right 3.522159e-01	k: 921290	n:2620000
LYPLA1   2620000 perm   2907 sec   (901 perm/sec)   p_kst 3.516374e-01   p_cons 4.427481e-04   p_joint 1.515649e-03

Joint ci ratio: 6.201116e-02	ci left: 1.470057e-03	ci right 1.564506e-03	k: 3989	n:2630000
Cons ci ratio: 1.148718e-01	ci left: 4.171580e-04	ci right 4.683631e-04	k: 1163	n:2630000
KS ci ratio: 3.282233e-03	ci left: 3.510602e-01	ci right 3.522147e-01	k: 924806	n:2630000
LYPLA1   2630000 perm   2928 sec   (898 perm/sec)   p_kst 3.516373e-01   p_cons 4.422053e-04   p_joint 1.516730e-03

Joint ci ratio: 6.193366e-02	ci left: 1.468218e-03	ci right 1.562426e-03	k: 3999	n:2640000
Cons ci ratio: 1.147241e-01	ci left: 4.166815e-04	ci right 4.677580e-04	k: 1166	n:2640000
KS ci ratio: 3.276015e-03	ci left: 3.510607e-01	ci right 3.522131e-01	k: 928321	n:2640000
LYPLA1   2640000 perm   2949 sec   (895 perm/sec)   p_kst 3.516367e-01   p_cons 4.416667e-04   p_joint 1.514773e-03

Joint ci ratio: 6.180245e-02	ci left: 1.468994e-03	ci right 1.563044e-03	k: 4016	n:2650000
Cons ci ratio: 1.144791e-01	ci left: 4.169419e-04	ci right 4.679337e-04	k: 1171	n:2650000
KS ci ratio: 3.269577e-03	ci left: 3.510968e-01	ci right 3.522469e-01	k: 931930	n:2650000
LYPLA1   2650000 perm   2969 sec   (892 perm/sec)   p_kst 3.516717e-01   p_cons 4.418868e-04   p_joint 1.515472e-03

Joint ci ratio: 6.173340e-02	ci left: 1.466802e-03	ci right 1.560604e-03	k: 4025	n:2660000
Cons ci ratio: 1.144303e-01	ci left: 4.157396e-04	ci right 4.665613e-04	k: 1172	n:2660000
KS ci ratio: 3.263564e-03	ci left: 3.510784e-01	ci right 3.522264e-01	k: 935395	n:2660000
LYPLA1   2660000 perm   2990 sec   (890 perm/sec)   p_kst 3.516523e-01   p_cons 4.406015e-04   p_joint 1.513158e-03

Joint ci ratio: 6.158820e-02	ci left: 1.468315e-03	ci right 1.561985e-03	k: 4044	n:2670000
Cons ci ratio: 1.143330e-01	ci left: 4.149101e-04	ci right 4.655843e-04	k: 1174	n:2670000
KS ci ratio: 3.257481e-03	ci left: 3.510748e-01	ci right 3.522206e-01	k: 938899	n:2670000
LYPLA1   2670000 perm   3011 sec   (887 perm/sec)   p_kst 3.516476e-01   p_cons 4.397004e-04   p_joint 1.514607e-03

Joint ci ratio: 6.150467e-02	ci left: 1.466877e-03	ci right 1.560324e-03	k: 4055	n:2680000
Cons ci ratio: 1.141873e-01	ci left: 4.144494e-04	ci right 4.649985e-04	k: 1177	n:2680000
KS ci ratio: 3.251497e-03	ci left: 3.510619e-01	ci right 3.522056e-01	k: 942378	n:2680000
LYPLA1   2680000 perm   3031 sec   (884 perm/sec)   p_kst 3.516336e-01   p_cons 4.391791e-04   p_joint 1.513060e-03

Joint ci ratio: 6.144419e-02	ci left: 1.464353e-03	ci right 1.557544e-03	k: 4063	n:2690000
Cons ci ratio: 1.139457e-01	ci left: 4.147144e-04	ci right 4.651816e-04	k: 1182	n:2690000
KS ci ratio: 3.245237e-03	ci left: 3.510926e-01	ci right 3.522341e-01	k: 945974	n:2690000
LYPLA1   2690000 perm   3052 sec   (881 perm/sec)   p_kst 3.516632e-01   p_cons 4.394052e-04   p_joint 1.510409e-03

Joint ci ratio: 6.132358e-02	ci left: 1.464764e-03	ci right 1.557792e-03	k: 4079	n:2700000
Cons ci ratio: 1.138016e-01	ci left: 4.142579e-04	ci right 4.646014e-04	k: 1185	n:2700000
KS ci ratio: 3.239205e-03	ci left: 3.510960e-01	ci right 3.522354e-01	k: 949497	n:2700000
LYPLA1   2700000 perm   3073 sec   (879 perm/sec)   p_kst 3.516656e-01   p_cons 4.388889e-04   p_joint 1.510741e-03

Joint ci ratio: 6.124863e-02	ci left: 1.462992e-03	ci right 1.555790e-03	k: 4089	n:2710000
Cons ci ratio: 1.136101e-01	ci left: 4.141633e-04	ci right 4.644050e-04	k: 1189	n:2710000
KS ci ratio: 3.233374e-03	ci left: 3.510758e-01	ci right 3.522131e-01	k: 952956	n:2710000
LYPLA1   2710000 perm   3094 sec   (876 perm/sec)   p_kst 3.516443e-01   p_cons 4.387454e-04   p_joint 1.508856e-03

Joint ci ratio: 6.114408e-02	ci left: 1.462682e-03	ci right 1.555296e-03	k: 4103	n:2720000
Cons ci ratio: 1.132774e-01	ci left: 4.151411e-04	ci right 4.653442e-04	k: 1196	n:2720000
KS ci ratio: 3.227681e-03	ci left: 3.510406e-01	ci right 3.521759e-01	k: 956374	n:2720000
LYPLA1   2720000 perm   3115 sec   (873 perm/sec)   p_kst 3.516081e-01   p_cons 4.397059e-04   p_joint 1.508456e-03

Joint ci ratio: 6.102523e-02	ci left: 1.463096e-03	ci right 1.555549e-03	k: 4119	n:2730000
Cons ci ratio: 1.130886e-01	ci left: 4.150442e-04	ci right 4.651463e-04	k: 1200	n:2730000
KS ci ratio: 3.221739e-03	ci left: 3.510453e-01	ci right 3.521785e-01	k: 959900	n:2730000
LYPLA1   2730000 perm   3135 sec   (871 perm/sec)   p_kst 3.516117e-01   p_cons 4.395604e-04   p_joint 1.508791e-03

Joint ci ratio: 6.092182e-02	ci left: 1.462787e-03	ci right 1.555060e-03	k: 4133	n:2740000
Cons ci ratio: 1.129477e-01	ci left: 4.145934e-04	ci right 4.645745e-04	k: 1203	n:2740000
KS ci ratio: 3.215777e-03	ci left: 3.510572e-01	ci right 3.521883e-01	k: 963446	n:2740000
LYPLA1   2740000 perm   3156 sec   (868 perm/sec)   p_kst 3.516226e-01   p_cons 4.390511e-04   p_joint 1.508394e-03

Joint ci ratio: 6.084833e-02	ci left: 1.461049e-03	ci right 1.553097e-03	k: 4143	n:2750000
Cons ci ratio: 1.126673e-01	ci left: 4.152060e-04	ci right 4.651285e-04	k: 1209	n:2750000
KS ci ratio: 3.209995e-03	ci left: 3.510484e-01	ci right 3.521774e-01	k: 966935	n:2750000
LYPLA1   2750000 perm   3177 sec   (866 perm/sec)   p_kst 3.516127e-01   p_cons 4.396364e-04   p_joint 1.506545e-03

Joint ci ratio: 6.070197e-02	ci left: 1.462892e-03	ci right 1.554826e-03	k: 4163	n:2760000
Cons ci ratio: 1.124352e-01	ci left: 4.154622e-04	ci right 4.653058e-04	k: 1214	n:2760000
KS ci ratio: 3.204167e-03	ci left: 3.510504e-01	ci right 3.521774e-01	k: 970454	n:2760000
LYPLA1   2760000 perm   3198 sec   (863 perm/sec)   p_kst 3.516138e-01   p_cons 4.398551e-04   p_joint 1.508333e-03

Joint ci ratio: 6.052045e-02	ci left: 1.466499e-03	ci right 1.558375e-03	k: 4188	n:2770000
Cons ci ratio: 1.120668e-01	ci left: 4.167694e-04	ci right 4.665951e-04	k: 1222	n:2770000
KS ci ratio: 3.198432e-03	ci left: 3.510438e-01	ci right 3.521688e-01	k: 973949	n:2770000
LYPLA1   2770000 perm   3219 sec   (860 perm/sec)   p_kst 3.516061e-01   p_cons 4.411552e-04   p_joint 1.511913e-03

Joint ci ratio: 7.490557e-02	ci left: 9.473012e-04	ci right 1.021370e-03	k: 2735	n:2780000
Cons ci ratio: 1.119753e-01	ci left: 4.159695e-04	ci right 4.656563e-04	k: 1224	n:2780000
KS ci ratio: 3.192649e-03	ci left: 3.510484e-01	ci right 3.521713e-01	k: 977475	n:2780000
LYPLA1   2780000 perm   3241 sec   (858 perm/sec)   p_kst 3.516097e-01   p_cons 4.402878e-04   p_joint 9.838129e-04

Joint ci ratio: 7.478269e-02	ci left: 9.470713e-04	ci right 1.020996e-03	k: 2744	n:2790000
Cons ci ratio: 1.118385e-01	ci left: 4.155237e-04	ci right 4.650926e-04	k: 1227	n:2790000
KS ci ratio: 3.186744e-03	ci left: 3.510748e-01	ci right 3.521957e-01	k: 981062	n:2790000
LYPLA1   2790000 perm   3262 sec   (855 perm/sec)   p_kst 3.516351e-01   p_cons 4.397849e-04   p_joint 9.835125e-04

Joint ci ratio: 7.466040e-02	ci left: 9.468431e-04	ci right 1.020624e-03	k: 2753	n:2800000
Cons ci ratio: 1.116115e-01	ci left: 4.157755e-04	ci right 4.652672e-04	k: 1232	n:2800000
KS ci ratio: 3.181122e-03	ci left: 3.510653e-01	ci right 3.521842e-01	k: 984549	n:2800000
LYPLA1   2800000 perm   3283 sec   (853 perm/sec)   p_kst 3.516246e-01   p_cons 4.400000e-04   p_joint 9.832143e-04

Joint ci ratio: 6.009164e-02	ci left: 1.466654e-03	ci right 1.557866e-03	k: 4248	n:2810000
Cons ci ratio: 1.112959e-01	ci left: 4.167176e-04	ci right 4.661719e-04	k: 1239	n:2810000
KS ci ratio: 3.175462e-03	ci left: 3.510655e-01	ci right 3.521824e-01	k: 988063	n:2810000
LYPLA1   2810000 perm   3305 sec   (850 perm/sec)   p_kst 3.516238e-01   p_cons 4.409253e-04   p_joint 1.511744e-03

Joint ci ratio: 7.428363e-02	ci left: 9.498722e-04	ci right 1.023499e-03	k: 2781	n:2820000
Cons ci ratio: 1.110276e-01	ci left: 4.173083e-04	ci right 4.667056e-04	k: 1245	n:2820000
KS ci ratio: 3.169896e-03	ci left: 3.510565e-01	ci right 3.521714e-01	k: 991551	n:2820000
LYPLA1   2820000 perm   3328 sec   (847 perm/sec)   p_kst 3.516138e-01   p_cons 4.414894e-04   p_joint 9.861702e-04

Joint ci ratio: 7.421703e-02	ci left: 9.482497e-04	ci right 1.021682e-03	k: 2786	n:2830000
Cons ci ratio: 1.107170e-01	ci left: 4.182387e-04	ci right 4.675985e-04	k: 1252	n:2830000
KS ci ratio: 3.164414e-03	ci left: 3.510398e-01	ci right 3.521527e-01	k: 995017	n:2830000
LYPLA1   2830000 perm   3349 sec   (845 perm/sec)   p_kst 3.515961e-01   p_cons 4.424028e-04   p_joint 9.844523e-04

Joint ci ratio: 5.980384e-02	ci left: 1.465382e-03	ci right 1.556062e-03	k: 4289	n:2840000
Cons ci ratio: 1.104528e-01	ci left: 4.188203e-04	ci right 4.681231e-04	k: 1258	n:2840000
KS ci ratio: 3.158638e-03	ci left: 3.510697e-01	ci right 3.521806e-01	k: 998615	n:2840000
LYPLA1   2840000 perm   3371 sec   (843 perm/sec)   p_kst 3.516250e-01   p_cons 4.429577e-04   p_joint 1.510211e-03

Joint ci ratio: 5.967181e-02	ci left: 1.466807e-03	ci right 1.557369e-03	k: 4308	n:2850000
Cons ci ratio: 1.103215e-01	ci left: 4.183743e-04	ci right 4.675623e-04	k: 1261	n:2850000
KS ci ratio: 3.153250e-03	ci left: 3.510477e-01	ci right 3.521568e-01	k: 1002066	n:2850000
LYPLA1   2850000 perm   3392 sec   (840 perm/sec)   p_kst 3.516021e-01   p_cons 4.424561e-04   p_joint 1.511579e-03

Joint ci ratio: 7.374220e-02	ci left: 9.506576e-04	ci right 1.023785e-03	k: 2822	n:2860000
Cons ci ratio: 1.100167e-01	ci left: 4.192915e-04	ci right 4.684424e-04	k: 1268	n:2860000
KS ci ratio: 3.147674e-03	ci left: 3.510571e-01	ci right 3.521642e-01	k: 1005606	n:2860000
LYPLA1   2860000 perm   3414 sec   (838 perm/sec)   p_kst 3.516105e-01   p_cons 4.433566e-04   p_joint 9.867133e-04

Joint ci ratio: 7.363796e-02	ci left: 9.500813e-04	ci right 1.023057e-03	k: 2830	n:2870000
Cons ci ratio: 1.100168e-01	ci left: 4.178306e-04	ci right 4.668102e-04	k: 1268	n:2870000
KS ci ratio: 3.142047e-03	ci left: 3.510782e-01	ci right 3.521834e-01	k: 1009180	n:2870000
LYPLA1   2870000 perm   3436 sec   (835 perm/sec)   p_kst 3.516307e-01   p_cons 4.418118e-04   p_joint 9.860627e-04

Joint ci ratio: 7.350825e-02	ci left: 9.501907e-04	ci right 1.023041e-03	k: 2840	n:2880000
Cons ci ratio: 1.097576e-01	ci left: 4.184059e-04	ci right 4.673299e-04	k: 1274	n:2880000
KS ci ratio: 3.136657e-03	ci left: 3.510690e-01	ci right 3.521723e-01	k: 1012667	n:2880000
LYPLA1   2880000 perm   3458 sec   (833 perm/sec)   p_kst 3.516205e-01   p_cons 4.423611e-04   p_joint 9.861111e-04

Joint ci ratio: 7.341789e-02	ci left: 9.492805e-04	ci right 1.021968e-03	k: 2847	n:2890000
Cons ci ratio: 1.096717e-01	ci left: 4.176311e-04	ci right 4.664239e-04	k: 1276	n:2890000
KS ci ratio: 3.131207e-03	ci left: 3.510727e-01	ci right 3.521740e-01	k: 1016191	n:2890000
LYPLA1   2890000 perm   3480 sec   (830 perm/sec)   p_kst 3.516232e-01   p_cons 4.415225e-04   p_joint 9.851211e-04

Joint ci ratio: 7.334073e-02	ci left: 9.480381e-04	ci right 1.020550e-03	k: 2853	n:2900000
Cons ci ratio: 1.095860e-01	ci left: 4.168618e-04	ci right 4.655241e-04	k: 1278	n:2900000
KS ci ratio: 3.125856e-03	ci left: 3.510660e-01	ci right 3.521654e-01	k: 1019685	n:2900000
LYPLA1   2900000 perm   3502 sec   (828 perm/sec)   p_kst 3.516155e-01   p_cons 4.406897e-04   p_joint 9.837931e-04

Joint ci ratio: 7.326380e-02	ci left: 9.468043e-04	ci right 1.019143e-03	k: 2859	n:2910000
Cons ci ratio: 1.094577e-01	ci left: 4.164319e-04	ci right 4.649835e-04	k: 1281	n:2910000
KS ci ratio: 3.120521e-03	ci left: 3.510610e-01	ci right 3.521585e-01	k: 1023184	n:2910000
LYPLA1   2910000 perm   3524 sec   (826 perm/sec)   p_kst 3.516096e-01   p_cons 4.402062e-04   p_joint 9.824742e-04

Joint ci ratio: 7.316157e-02	ci left: 9.462514e-04	ci right 1.018443e-03	k: 2867	n:2920000
Cons ci ratio: 1.091177e-01	ci left: 4.176706e-04	ci right 4.662057e-04	k: 1289	n:2920000
KS ci ratio: 3.114975e-03	ci left: 3.510910e-01	ci right 3.521867e-01	k: 1026785	n:2920000
LYPLA1   2920000 perm   3547 sec   (823 perm/sec)   p_kst 3.516387e-01   p_cons 4.414384e-04   p_joint 9.818493e-04

Joint ci ratio: 7.302166e-02	ci left: 9.467075e-04	ci right 1.018790e-03	k: 2878	n:2930000
Cons ci ratio: 1.089911e-01	ci left: 4.172411e-04	ci right 4.656664e-04	k: 1292	n:2930000
KS ci ratio: 3.109690e-03	ci left: 3.510867e-01	ci right 3.521805e-01	k: 1030286	n:2930000
LYPLA1   2930000 perm   3569 sec   (821 perm/sec)   p_kst 3.516334e-01   p_cons 4.409556e-04   p_joint 9.822526e-04

Joint ci ratio: 7.281951e-02	ci left: 9.488304e-04	ci right 1.020866e-03	k: 2894	n:2940000
Cons ci ratio: 1.087809e-01	ci left: 4.174763e-04	ci right 4.658294e-04	k: 1297	n:2940000
KS ci ratio: 3.104414e-03	ci left: 3.510851e-01	ci right 3.521771e-01	k: 1033795	n:2940000
LYPLA1   2940000 perm   3592 sec   (819 perm/sec)   p_kst 3.516310e-01   p_cons 4.411565e-04   p_joint 9.843537e-04

Joint ci ratio: 7.268155e-02	ci left: 9.492750e-04	ci right 1.021202e-03	k: 2905	n:2950000
Cons ci ratio: 1.086973e-01	ci left: 4.167206e-04	ci right 4.649468e-04	k: 1299	n:2950000
KS ci ratio: 3.099142e-03	ci left: 3.510870e-01	ci right 3.521770e-01	k: 1037314	n:2950000
LYPLA1   2950000 perm   3615 sec   (816 perm/sec)   p_kst 3.516319e-01   p_cons 4.403390e-04   p_joint 9.847458e-04

Joint ci ratio: 7.256927e-02	ci left: 9.490533e-04	ci right 1.020848e-03	k: 2914	n:2960000
Cons ci ratio: 1.085304e-01	ci left: 4.166274e-04	ci right 4.647640e-04	k: 1303	n:2960000
KS ci ratio: 3.093885e-03	ci left: 3.510905e-01	ci right 3.521787e-01	k: 1040838	n:2960000
LYPLA1   2960000 perm   3638 sec   (814 perm/sec)   p_kst 3.516345e-01   p_cons 4.402027e-04   p_joint 9.844595e-04

Joint ci ratio: 7.246992e-02	ci left: 9.485026e-04	ci right 1.020153e-03	k: 2922	n:2970000
Cons ci ratio: 1.083229e-01	ci left: 4.168625e-04	ci right 4.649283e-04	k: 1308	n:2970000
KS ci ratio: 3.088814e-03	ci left: 3.510704e-01	ci right 3.521568e-01	k: 1044292	n:2970000
LYPLA1   2970000 perm   3661 sec   (811 perm/sec)   p_kst 3.516135e-01   p_cons 4.404040e-04   p_joint 9.838384e-04

Joint ci ratio: 7.229694e-02	ci left: 9.499327e-04	ci right 1.021512e-03	k: 2936	n:2980000
Cons ci ratio: 1.082817e-01	ci left: 4.157901e-04	ci right 4.637128e-04	k: 1309	n:2980000
KS ci ratio: 3.083864e-03	ci left: 3.510364e-01	ci right 3.521209e-01	k: 1047704	n:2980000
LYPLA1   2980000 perm   3684 sec   (809 perm/sec)   p_kst 3.515785e-01   p_cons 4.392617e-04   p_joint 9.852349e-04

Joint ci ratio: 7.213743e-02	ci left: 9.510250e-04	ci right 1.022522e-03	k: 2949	n:2990000
Cons ci ratio: 1.081167e-01	ci left: 4.157011e-04	ci right 4.635359e-04	k: 1313	n:2990000
KS ci ratio: 3.078742e-03	ci left: 3.510314e-01	ci right 3.521141e-01	k: 1051202	n:2990000
LYPLA1   2990000 perm   3706 sec   (807 perm/sec)   p_kst 3.515726e-01   p_cons 4.391304e-04   p_joint 9.862876e-04

Joint ci ratio: 7.207643e-02	ci left: 9.494915e-04	ci right 1.020811e-03	k: 2954	n:3000000
Cons ci ratio: 1.079935e-01	ci left: 4.152884e-04	ci right 4.630178e-04	k: 1316	n:3000000
KS ci ratio: 3.073600e-03	ci left: 3.510334e-01	ci right 3.521143e-01	k: 1054721	n:3000000
LYPLA1   3000000 perm   3729 sec   (804 perm/sec)   p_kst 3.515737e-01   p_cons 4.386667e-04   p_joint 9.846667e-04

Joint ci ratio: 7.197908e-02	ci left: 9.489470e-04	ci right 1.020125e-03	k: 2962	n:3010000
Cons ci ratio: 1.077076e-01	ci left: 4.161715e-04	ci right 4.638678e-04	k: 1323	n:3010000
KS ci ratio: 3.068634e-03	ci left: 3.510128e-01	ci right 3.520919e-01	k: 1058172	n:3010000
LYPLA1   3010000 perm   3752 sec   (802 perm/sec)   p_kst 3.515522e-01   p_cons 4.395349e-04   p_joint 9.840532e-04

Joint ci ratio: 7.193062e-02	ci left: 9.471054e-04	ci right 1.018095e-03	k: 2966	n:3020000
Cons ci ratio: 1.076670e-01	ci left: 4.151157e-04	ci right 4.626719e-04	k: 1324	n:3020000
KS ci ratio: 3.063673e-03	ci left: 3.509953e-01	ci right 3.520726e-01	k: 1061632	n:3020000
LYPLA1   3020000 perm   3775 sec   (800 perm/sec)   p_kst 3.515338e-01   p_cons 4.384106e-04   p_joint 9.821192e-04

Joint ci ratio: 7.183386e-02	ci left: 9.465724e-04	ci right 1.017423e-03	k: 2974	n:3030000
Cons ci ratio: 1.076265e-01	ci left: 4.140668e-04	ci right 4.614839e-04	k: 1325	n:3030000
KS ci ratio: 3.058559e-03	ci left: 3.510043e-01	ci right 3.520798e-01	k: 1065172	n:3030000
LYPLA1   3030000 perm   3798 sec   (798 perm/sec)   p_kst 3.515419e-01   p_cons 4.372937e-04   p_joint 9.815182e-04

Joint ci ratio: 7.173749e-02	ci left: 9.460431e-04	ci right 1.016755e-03	k: 2982	n:3040000
Cons ci ratio: 1.073838e-01	ci left: 4.146254e-04	ci right 4.619926e-04	k: 1331	n:3040000
KS ci ratio: 3.053527e-03	ci left: 3.510047e-01	ci right 3.520785e-01	k: 1068686	n:3040000
LYPLA1   3040000 perm   3822 sec   (795 perm/sec)   p_kst 3.515414e-01   p_cons 4.378289e-04   p_joint 9.809211e-04

Joint ci ratio: 7.162953e-02	ci left: 9.458392e-04	ci right 1.016425e-03	k: 2991	n:3050000
Cons ci ratio: 1.069829e-01	ci left: 4.164568e-04	ci right 4.638444e-04	k: 1341	n:3050000
KS ci ratio: 3.048663e-03	ci left: 3.509838e-01	ci right 3.520558e-01	k: 1072135	n:3050000
LYPLA1   3050000 perm   3845 sec   (793 perm/sec)   p_kst 3.515197e-01   p_cons 4.396721e-04   p_joint 9.806557e-04

Joint ci ratio: 7.149820e-02	ci left: 9.462787e-04	ci right 1.016763e-03	k: 3002	n:3060000
Cons ci ratio: 1.066258e-01	ci left: 4.179584e-04	ci right 4.653482e-04	k: 1350	n:3060000
KS ci ratio: 3.043639e-03	ci left: 3.509905e-01	ci right 3.520607e-01	k: 1075668	n:3060000
LYPLA1   3060000 perm   3868 sec   (791 perm/sec)   p_kst 3.515255e-01   p_cons 4.411765e-04   p_joint 9.810458e-04

Joint ci ratio: 7.137945e-02	ci left: 9.463955e-04	ci right 1.016766e-03	k: 3012	n:3070000
Cons ci ratio: 1.063115e-01	ci left: 4.191335e-04	ci right 4.665076e-04	k: 1358	n:3070000
KS ci ratio: 3.038565e-03	ci left: 3.510082e-01	ci right 3.520767e-01	k: 1079235	n:3070000
LYPLA1   3070000 perm   3892 sec   (789 perm/sec)   p_kst 3.515423e-01   p_cons 4.423453e-04   p_joint 9.811075e-04

Joint ci ratio: 7.128490e-02	ci left: 9.458738e-04	ci right 1.016109e-03	k: 3020	n:3080000
Cons ci ratio: 1.060387e-01	ci left: 4.199850e-04	ci right 4.673261e-04	k: 1365	n:3080000
KS ci ratio: 3.033653e-03	ci left: 3.510054e-01	ci right 3.520722e-01	k: 1082739	n:3080000
LYPLA1   3080000 perm   3915 sec   (787 perm/sec)   p_kst 3.515386e-01   p_cons 4.431818e-04   p_joint 9.805195e-04

Joint ci ratio: 7.116721e-02	ci left: 9.459914e-04	ci right 1.016114e-03	k: 3030	n:3090000
Cons ci ratio: 1.059999e-01	ci left: 4.189409e-04	ci right 4.661459e-04	k: 1366	n:3090000
KS ci ratio: 3.028739e-03	ci left: 3.510065e-01	ci right 3.520715e-01	k: 1086255	n:3090000
LYPLA1   3090000 perm   3940 sec   (784 perm/sec)   p_kst 3.515388e-01   p_cons 4.420712e-04   p_joint 9.805825e-04

Joint ci ratio: 7.110864e-02	ci left: 9.445240e-04	ci right 1.014478e-03	k: 3035	n:3100000
Cons ci ratio: 1.059613e-01	ci left: 4.179035e-04	ci right 4.649733e-04	k: 1367	n:3100000
KS ci ratio: 3.023932e-03	ci left: 3.509949e-01	ci right 3.520582e-01	k: 1089732	n:3100000
LYPLA1   3100000 perm   3964 sec   (782 perm/sec)   p_kst 3.515265e-01   p_cons 4.409677e-04   p_joint 9.790323e-04

Joint ci ratio: 7.100348e-02	ci left: 9.443294e-04	ci right 1.014161e-03	k: 3044	n:3110000
Cons ci ratio: 1.058839e-01	ci left: 4.171858e-04	ci right 4.641384e-04	k: 1369	n:3110000
KS ci ratio: 3.019033e-03	ci left: 3.510009e-01	ci right 3.520624e-01	k: 1093263	n:3110000
LYPLA1   3110000 perm   3988 sec   (780 perm/sec)   p_kst 3.515315e-01   p_cons 4.401929e-04   p_joint 9.787781e-04

Joint ci ratio: 7.082918e-02	ci left: 9.460252e-04	ci right 1.015804e-03	k: 3059	n:3120000
Cons ci ratio: 1.058068e-01	ci left: 4.164727e-04	ci right 4.633087e-04	k: 1371	n:3120000
KS ci ratio: 3.014109e-03	ci left: 3.510141e-01	ci right 3.520740e-01	k: 1096817	n:3120000
LYPLA1   3120000 perm   4012 sec   (778 perm/sec)   p_kst 3.515439e-01   p_cons 4.394231e-04   p_joint 9.804487e-04

Joint ci ratio: 7.070220e-02	ci left: 9.464549e-04	ci right 1.016135e-03	k: 3070	n:3130000
Cons ci ratio: 1.056913e-01	ci left: 4.160752e-04	ci right 4.628123e-04	k: 1374	n:3130000
KS ci ratio: 3.009407e-03	ci left: 3.509972e-01	ci right 3.520554e-01	k: 1100277	n:3130000
LYPLA1   3130000 perm   4036 sec   (776 perm/sec)   p_kst 3.515262e-01   p_cons 4.389776e-04   p_joint 9.808307e-04

Joint ci ratio: 7.061031e-02	ci left: 9.459435e-04	ci right 1.015492e-03	k: 3078	n:3140000
Cons ci ratio: 1.056529e-01	ci left: 4.150602e-04	ci right 4.616653e-04	k: 1375	n:3140000
KS ci ratio: 3.004417e-03	ci left: 3.510276e-01	ci right 3.520841e-01	k: 1103885	n:3140000
LYPLA1   3140000 perm   4060 sec   (773 perm/sec)   p_kst 3.515557e-01   p_cons 4.378981e-04   p_joint 9.802548e-04

Joint ci ratio: 7.053021e-02	ci left: 9.451235e-04	ci right 1.014529e-03	k: 3085	n:3150000
Cons ci ratio: 1.055763e-01	ci left: 4.143607e-04	ci right 4.608514e-04	k: 1377	n:3150000
KS ci ratio: 2.999631e-03	ci left: 3.510305e-01	ci right 3.520853e-01	k: 1107407	n:3150000
LYPLA1   3150000 perm   4085 sec   (771 perm/sec)   p_kst 3.515578e-01   p_cons 4.371429e-04   p_joint 9.793651e-04

Joint ci ratio: 7.037072e-02	ci left: 9.464849e-04	ci right 1.015827e-03	k: 3099	n:3160000
Cons ci ratio: 1.052711e-01	ci left: 4.155143e-04	ci right 4.619914e-04	k: 1385	n:3160000
KS ci ratio: 2.994909e-03	ci left: 3.510270e-01	ci right 3.520802e-01	k: 1110909	n:3160000
LYPLA1   3160000 perm   4110 sec   (769 perm/sec)   p_kst 3.515535e-01   p_cons 4.382911e-04   p_joint 9.806962e-04

Joint ci ratio: 7.030276e-02	ci left: 9.453586e-04	ci right 1.014549e-03	k: 3105	n:3170000
Cons ci ratio: 1.051953e-01	ci left: 4.148179e-04	ci right 4.611815e-04	k: 1387	n:3170000
KS ci ratio: 2.990342e-03	ci left: 3.510034e-01	ci right 3.520549e-01	k: 1114347	n:3170000
LYPLA1   3170000 perm   4135 sec   (767 perm/sec)   p_kst 3.515290e-01   p_cons 4.375394e-04   p_joint 9.794953e-04

Joint ci ratio: 7.024630e-02	ci left: 9.439305e-04	ci right 1.012958e-03	k: 3110	n:3180000
Cons ci ratio: 1.050818e-01	ci left: 4.144320e-04	ci right 4.606994e-04	k: 1390	n:3180000
KS ci ratio: 2.985651e-03	ci left: 3.510019e-01	ci right 3.520518e-01	k: 1117855	n:3180000
LYPLA1   3180000 perm   4160 sec   (764 perm/sec)   p_kst 3.515267e-01   p_cons 4.371069e-04   p_joint 9.779874e-04

Joint ci ratio: 7.013367e-02	ci left: 9.440512e-04	ci right 1.012973e-03	k: 3120	n:3190000
Cons ci ratio: 1.049687e-01	ci left: 4.140486e-04	ci right 4.602204e-04	k: 1393	n:3190000
KS ci ratio: 2.980835e-03	ci left: 3.510231e-01	ci right 3.520713e-01	k: 1121435	n:3190000
LYPLA1   3190000 perm   4185 sec   (762 perm/sec)   p_kst 3.515470e-01   p_cons 4.366771e-04   p_joint 9.780564e-04

Joint ci ratio: 7.006639e-02	ci left: 9.429432e-04	ci right 1.011715e-03	k: 3126	n:3200000
Cons ci ratio: 1.048184e-01	ci left: 4.139719e-04	ci right 4.600650e-04	k: 1397	n:3200000
KS ci ratio: 2.976189e-03	ci left: 3.510215e-01	ci right 3.520681e-01	k: 1124943	n:3200000
LYPLA1   3200000 perm   4210 sec   (760 perm/sec)   p_kst 3.515447e-01   p_cons 4.365625e-04   p_joint 9.768750e-04

Joint ci ratio: 6.994347e-02	ci left: 9.433725e-04	ci right 1.012050e-03	k: 3137	n:3210000
Cons ci ratio: 1.045942e-01	ci left: 4.145024e-04	ci right 4.605498e-04	k: 1403	n:3210000
KS ci ratio: 2.971581e-03	ci left: 3.510175e-01	ci right 3.520625e-01	k: 1128443	n:3210000
LYPLA1   3210000 perm   4235 sec   (758 perm/sec)   p_kst 3.515399e-01   p_cons 4.370717e-04   p_joint 9.772586e-04

Joint ci ratio: 6.988786e-02	ci left: 9.419684e-04	ci right 1.010487e-03	k: 3142	n:3220000
Cons ci ratio: 1.044826e-01	ci left: 4.141225e-04	ci right 4.600756e-04	k: 1406	n:3220000
KS ci ratio: 2.967182e-03	ci left: 3.509847e-01	ci right 3.520280e-01	k: 1131850	n:3220000
LYPLA1   3220000 perm   4260 sec   (756 perm/sec)   p_kst 3.515062e-01   p_cons 4.366460e-04   p_joint 9.757764e-04

Joint ci ratio: 6.985460e-02	ci left: 9.399646e-04	ci right 1.008304e-03	k: 3145	n:3230000
Cons ci ratio: 1.044827e-01	ci left: 4.128404e-04	ci right 4.586512e-04	k: 1406	n:3230000
KS ci ratio: 2.962600e-03	ci left: 3.509833e-01	ci right 3.520250e-01	k: 1135358	n:3230000
LYPLA1   3230000 perm   4285 sec   (754 perm/sec)   p_kst 3.515040e-01   p_cons 4.352941e-04   p_joint 9.736842e-04

Joint ci ratio: 6.977705e-02	ci left: 9.391862e-04	ci right 1.007390e-03	k: 3152	n:3240000
Cons ci ratio: 1.044456e-01	ci left: 4.118667e-04	ci right 4.575524e-04	k: 1407	n:3240000
KS ci ratio: 2.958057e-03	ci left: 3.509792e-01	ci right 3.520192e-01	k: 1138857	n:3240000
LYPLA1   3240000 perm   4310 sec   (752 perm/sec)   p_kst 3.514991e-01   p_cons 4.342593e-04   p_joint 9.728395e-04

Joint ci ratio: 6.964462e-02	ci left: 9.399244e-04	ci right 1.008047e-03	k: 3164	n:3250000
Cons ci ratio: 1.043346e-01	ci left: 4.114984e-04	ci right 4.570917e-04	k: 1410	n:3250000
KS ci ratio: 2.953482e-03	ci left: 3.509831e-01	ci right 3.520215e-01	k: 1142382	n:3250000
LYPLA1   3250000 perm   4335 sec   (750 perm/sec)   p_kst 3.515022e-01   p_cons 4.338462e-04   p_joint 9.735385e-04

Joint ci ratio: 6.951294e-02	ci left: 9.406581e-04	ci right 1.008700e-03	k: 3176	n:3260000
Cons ci ratio: 1.041134e-01	ci left: 4.120287e-04	ci right 4.575780e-04	k: 1416	n:3260000
KS ci ratio: 2.948889e-03	ci left: 3.509931e-01	ci right 3.520299e-01	k: 1145927	n:3260000
LYPLA1   3260000 perm   4359 sec   (748 perm/sec)   p_kst 3.515113e-01   p_cons 4.343558e-04   p_joint 9.742331e-04

Joint ci ratio: 6.942561e-02	ci left: 9.401855e-04	ci right 1.008104e-03	k: 3184	n:3270000
Cons ci ratio: 1.040401e-01	ci left: 4.113643e-04	ci right 4.568062e-04	k: 1418	n:3270000
KS ci ratio: 2.944387e-03	ci left: 3.509923e-01	ci right 3.520276e-01	k: 1149437	n:3270000
LYPLA1   3270000 perm   4384 sec   (746 perm/sec)   p_kst 3.515098e-01   p_cons 4.336391e-04   p_joint 9.737003e-04

Joint ci ratio: 6.928432e-02	ci left: 9.412137e-04	ci right 1.009062e-03	k: 3197	n:3280000
Cons ci ratio: 1.038572e-01	ci left: 4.115949e-04	ci right 4.569775e-04	k: 1423	n:3280000
KS ci ratio: 2.939823e-03	ci left: 3.510043e-01	ci right 3.520380e-01	k: 1152989	n:3280000
LYPLA1   3280000 perm   4409 sec   (744 perm/sec)   p_kst 3.515210e-01   p_cons 4.338415e-04   p_joint 9.746951e-04

Joint ci ratio: 6.917624e-02	ci left: 9.413398e-04	ci right 1.009088e-03	k: 3207	n:3290000
Cons ci ratio: 1.036391e-01	ci left: 4.121203e-04	ci right 4.574595e-04	k: 1429	n:3290000
KS ci ratio: 2.935350e-03	ci left: 3.510053e-01	ci right 3.520375e-01	k: 1156505	n:3290000
LYPLA1   3290000 perm   4434 sec   (742 perm/sec)   p_kst 3.515213e-01   p_cons 4.343465e-04   p_joint 9.747720e-04

Joint ci ratio: 6.902575e-02	ci left: 9.426564e-04	ci right 1.010345e-03	k: 3221	n:3300000
Cons ci ratio: 1.034584e-01	ci left: 4.123473e-04	ci right 4.576277e-04	k: 1434	n:3300000
KS ci ratio: 2.931036e-03	ci left: 3.509849e-01	ci right 3.520154e-01	k: 1159950	n:3300000
LYPLA1   3300000 perm   4459 sec   (740 perm/sec)   p_kst 3.515000e-01   p_cons 4.345455e-04   p_joint 9.760606e-04

Joint ci ratio: 6.892955e-02	ci left: 9.424806e-04	ci right 1.010059e-03	k: 3230	n:3310000
Cons ci ratio: 1.032427e-01	ci left: 4.128674e-04	ci right 4.581046e-04	k: 1440	n:3310000
KS ci ratio: 2.926611e-03	ci left: 3.509847e-01	ci right 3.520137e-01	k: 1163462	n:3310000
LYPLA1   3310000 perm   4484 sec   (738 perm/sec)   p_kst 3.514991e-01   p_cons 4.350453e-04   p_joint 9.758308e-04

Joint ci ratio: 6.880188e-02	ci left: 9.431941e-04	ci right 1.010693e-03	k: 3242	n:3320000
Cons ci ratio: 1.030641e-01	ci left: 4.130910e-04	ci right 4.582697e-04	k: 1445	n:3320000
KS ci ratio: 2.922113e-03	ci left: 3.509991e-01	ci right 3.520265e-01	k: 1167022	n:3320000
LYPLA1   3320000 perm   4509 sec   (736 perm/sec)   p_kst 3.515127e-01   p_cons 4.352410e-04   p_joint 9.765060e-04

Joint ci ratio: 6.872778e-02	ci left: 9.424276e-04	ci right 1.009796e-03	k: 3249	n:3330000
Cons ci ratio: 1.029218e-01	ci left: 4.130208e-04	ci right 4.581256e-04	k: 1449	n:3330000
KS ci ratio: 2.917809e-03	ci left: 3.509863e-01	ci right 3.520122e-01	k: 1170492	n:3330000
LYPLA1   3330000 perm   4535 sec   (734 perm/sec)   p_kst 3.514991e-01   p_cons 4.351351e-04   p_joint 9.756757e-04

Joint ci ratio: 6.863282e-02	ci left: 9.422543e-04	ci right 1.009514e-03	k: 3258	n:3340000
Cons ci ratio: 1.028155e-01	ci left: 4.126593e-04	ci right 4.576753e-04	k: 1452	n:3340000
KS ci ratio: 2.913478e-03	ci left: 3.509808e-01	ci right 3.520051e-01	k: 1173986	n:3340000
LYPLA1   3340000 perm   4561 sec   (732 perm/sec)   p_kst 3.514928e-01   p_cons 4.347305e-04   p_joint 9.754491e-04

Joint ci ratio: 6.854875e-02	ci left: 9.417887e-04	ci right 1.008929e-03	k: 3266	n:3350000
Cons ci ratio: 1.027096e-01	ci left: 4.123000e-04	ci right 4.572276e-04	k: 1455	n:3350000
KS ci ratio: 2.909166e-03	ci left: 3.509753e-01	ci right 3.519981e-01	k: 1177480	n:3350000
LYPLA1   3350000 perm   4586 sec   (731 perm/sec)   p_kst 3.514866e-01   p_cons 4.343284e-04   p_joint 9.749254e-04

Joint ci ratio: 6.845454e-02	ci left: 9.416184e-04	ci right 1.008651e-03	k: 3275	n:3360000
Cons ci ratio: 1.024635e-01	ci left: 4.131028e-04	ci right 4.580036e-04	k: 1462	n:3360000
KS ci ratio: 2.904900e-03	ci left: 3.509657e-01	ci right 3.519870e-01	k: 1180960	n:3360000
LYPLA1   3360000 perm   4612 sec   (729 perm/sec)   p_kst 3.514762e-01   p_cons 4.351190e-04   p_joint 9.747024e-04

Joint ci ratio: 6.839197e-02	ci left: 9.405743e-04	ci right 1.007469e-03	k: 3281	n:3370000
Cons ci ratio: 1.023586e-01	ci left: 4.127443e-04	ci right 4.575575e-04	k: 1465	n:3370000
KS ci ratio: 2.900537e-03	ci left: 3.509742e-01	ci right 3.519940e-01	k: 1184501	n:3370000
LYPLA1   3370000 perm   4638 sec   (727 perm/sec)   p_kst 3.514840e-01   p_cons 4.347181e-04   p_joint 9.735905e-04

Joint ci ratio: 6.828802e-02	ci left: 9.406995e-04	ci right 1.007497e-03	k: 3291	n:3380000
Cons ci ratio: 1.022541e-01	ci left: 4.123881e-04	ci right 4.571141e-04	k: 1468	n:3380000
KS ci ratio: 2.896234e-03	ci left: 3.509765e-01	ci right 3.519948e-01	k: 1188021	n:3380000
LYPLA1   3380000 perm   4664 sec   (725 perm/sec)   p_kst 3.514855e-01   p_cons 4.343195e-04   p_joint 9.736686e-04

Joint ci ratio: 6.821556e-02	ci left: 9.399542e-04	ci right 1.006626e-03	k: 3298	n:3390000
Cons ci ratio: 1.021152e-01	ci left: 4.123214e-04	ci right 4.569757e-04	k: 1472	n:3390000
KS ci ratio: 2.892026e-03	ci left: 3.509667e-01	ci right 3.519834e-01	k: 1191500	n:3390000
LYPLA1   3390000 perm   4689 sec   (723 perm/sec)   p_kst 3.514749e-01   p_cons 4.342183e-04   p_joint 9.728614e-04

Joint ci ratio: 6.811240e-02	ci left: 9.400807e-04	ci right 1.006656e-03	k: 3308	n:3400000
Cons ci ratio: 1.018389e-01	ci left: 4.134016e-04	ci right 4.580446e-04	k: 1480	n:3400000
KS ci ratio: 2.887654e-03	ci left: 3.509857e-01	ci right 3.520010e-01	k: 1195077	n:3400000
LYPLA1   3400000 perm   4715 sec   (721 perm/sec)   p_kst 3.514932e-01   p_cons 4.352941e-04   p_joint 9.729412e-04

Joint ci ratio: 6.792781e-02	ci left: 9.425127e-04	ci right 1.009072e-03	k: 3326	n:3410000
Cons ci ratio: 1.015649e-01	ci left: 4.144757e-04	ci right 4.591071e-04	k: 1488	n:3410000
KS ci ratio: 2.883472e-03	ci left: 3.509777e-01	ci right 3.519915e-01	k: 1198562	n:3410000
LYPLA1   3410000 perm   4741 sec   (719 perm/sec)   p_kst 3.514845e-01   p_cons 4.363636e-04   p_joint 9.753666e-04

Joint ci ratio: 6.780562e-02	ci left: 9.432061e-04	ci right 1.009690e-03	k: 3338	n:3420000
Cons ci ratio: 1.014968e-01	ci left: 4.138337e-04	ci right 4.583643e-04	k: 1490	n:3420000
KS ci ratio: 2.879120e-03	ci left: 3.509995e-01	ci right 3.520118e-01	k: 1202149	n:3420000
LYPLA1   3420000 perm   4767 sec   (717 perm/sec)   p_kst 3.515056e-01   p_cons 4.356725e-04   p_joint 9.760234e-04

Joint ci ratio: 6.769419e-02	ci left: 9.436089e-04	ci right 1.010008e-03	k: 3349	n:3430000
Cons ci ratio: 1.013271e-01	ci left: 4.140479e-04	ci right 4.585226e-04	k: 1495	n:3430000
KS ci ratio: 2.874911e-03	ci left: 3.510017e-01	ci right 3.520125e-01	k: 1205669	n:3430000
LYPLA1   3430000 perm   4793 sec   (716 perm/sec)   p_kst 3.515070e-01   p_cons 4.358601e-04   p_joint 9.763848e-04

Joint ci ratio: 6.760345e-02	ci left: 9.434379e-04	ci right 1.009732e-03	k: 3358	n:3440000
Cons ci ratio: 1.011919e-01	ci left: 4.139776e-04	ci right 4.583819e-04	k: 1499	n:3440000
KS ci ratio: 2.870753e-03	ci left: 3.509986e-01	ci right 3.520080e-01	k: 1209171	n:3440000
LYPLA1   3440000 perm   4818 sec   (714 perm/sec)   p_kst 3.515032e-01   p_cons 4.357558e-04   p_joint 9.761628e-04

Joint ci ratio: 6.750304e-02	ci left: 9.435529e-04	ci right 1.009753e-03	k: 3368	n:3450000
Cons ci ratio: 1.010909e-01	ci left: 4.136253e-04	ci right 4.579449e-04	k: 1502	n:3450000
KS ci ratio: 2.866628e-03	ci left: 3.509933e-01	ci right 3.520012e-01	k: 1212665	n:3450000
LYPLA1   3450000 perm   4845 sec   (712 perm/sec)   p_kst 3.514971e-01   p_cons 4.353623e-04   p_joint 9.762319e-04

Joint ci ratio: 6.738312e-02	ci left: 9.442356e-04	ci right 1.010361e-03	k: 3380	n:3460000
Cons ci ratio: 1.007895e-01	ci left: 4.149653e-04	ci right 4.592881e-04	k: 1511	n:3460000
KS ci ratio: 2.862473e-03	ci left: 3.509955e-01	ci right 3.520019e-01	k: 1216185	n:3460000
LYPLA1   3460000 perm   4871 sec   (710 perm/sec)   p_kst 3.514986e-01   p_cons 4.367052e-04   p_joint 9.768786e-04

Joint ci ratio: 6.727376e-02	ci left: 9.446311e-04	ci right 1.010673e-03	k: 3391	n:3470000
Cons ci ratio: 1.006232e-01	ci left: 4.151741e-04	ci right 4.594417e-04	k: 1516	n:3470000
KS ci ratio: 2.858488e-03	ci left: 3.509734e-01	ci right 3.519784e-01	k: 1219621	n:3470000
LYPLA1   3470000 perm   4897 sec   (709 perm/sec)   p_kst 3.514758e-01   p_cons 4.368876e-04   p_joint 9.772334e-04

Joint ci ratio: 6.715506e-02	ci left: 9.453070e-04	ci right 1.011275e-03	k: 3403	n:3480000
Cons ci ratio: 1.004578e-01	ci left: 4.153817e-04	ci right 4.595944e-04	k: 1521	n:3480000
KS ci ratio: 2.854464e-03	ci left: 3.509604e-01	ci right 3.519639e-01	k: 1223088	n:3480000
LYPLA1   3480000 perm   4924 sec   (707 perm/sec)   p_kst 3.514621e-01   p_cons 4.370690e-04   p_joint 9.778736e-04

Joint ci ratio: 6.706646e-02	ci left: 9.451339e-04	ci right 1.010999e-03	k: 3412	n:3490000
Cons ci ratio: 1.004249e-01	ci left: 4.144708e-04	ci right 4.585712e-04	k: 1522	n:3490000
KS ci ratio: 2.850393e-03	ci left: 3.509578e-01	ci right 3.519599e-01	k: 1226591	n:3490000
LYPLA1   3490000 perm   4952 sec   (705 perm/sec)   p_kst 3.514587e-01   p_cons 4.361032e-04   p_joint 9.776504e-04

Joint ci ratio: 6.696842e-02	ci left: 9.452428e-04	ci right 1.011016e-03	k: 3422	n:3500000
Cons ci ratio: 1.002276e-01	ci left: 4.149579e-04	ci right 4.590183e-04	k: 1528	n:3500000
KS ci ratio: 2.846399e-03	ci left: 3.509455e-01	ci right 3.519461e-01	k: 1230060	n:3500000
LYPLA1   3500000 perm   4979 sec   (703 perm/sec)   p_kst 3.514457e-01   p_cons 4.365714e-04   p_joint 9.777143e-04

Joint ci ratio: 6.690008e-02	ci left: 9.445107e-04	ci right 1.010163e-03	k: 3429	n:3510000
Cons ci ratio: 1.001949e-01	ci left: 4.140535e-04	ci right 4.580026e-04	k: 1529	n:3510000
KS ci ratio: 2.842248e-03	ci left: 3.509612e-01	ci right 3.519604e-01	k: 1233627	n:3510000
LYPLA1   3510000 perm   5005 sec   (701 perm/sec)   p_kst 3.514607e-01   p_cons 4.356125e-04   p_joint 9.769231e-04

Joint ci ratio: 6.677363e-02	ci left: 9.454589e-04	ci right 1.011048e-03	k: 3442	n:3520000
Cons ci ratio: 9.999899e-02	ci left: 4.145390e-04	ci right 4.584487e-04	k: 1535	n:3520000
KS ci ratio: 2.838261e-03	ci left: 3.509535e-01	ci right 3.519513e-01	k: 1237112	n:3520000
LYPLA1   3520000 perm   5032 sec   (700 perm/sec)   p_kst 3.514523e-01   p_cons 4.360795e-04   p_joint 9.778409e-04

Outputting figure to mutsig2_images.part000000000100/LYPLA1.3_729_3520000_0.35145_0.00043608_0.00097784.png
                gene_name: LYPLA1
               theta_stop: 0.100 
                    nperm: 3520000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.00044 
      ci_cons_bounds_left: 0.00041 
     ci_cons_bounds_right: 0.00046 
                  p_joint: 0.00098 
     ci_joint_bounds_left: 0.00095 
    ci_joint_bounds_right: 0.0010 

Current progress: 54 percent done.
LYZL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.240530e-02	ci left: 4.508931e-01	ci right 4.705298e-01	k: 4607	n:10000
KS ci ratio: 1.859697e-02	ci left: 8.085685e-01	ci right 8.238468e-01	k: 8163	n:10000
LYZL2   10000 perm   2 sec   (6609 perm/sec)   p_kst 8.163000e-01   p_cons 4.607000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000100/LYZL2.3_605_10000_0.8163_0.4607_1.png
                gene_name: LYZL2
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 57 percent done.
MAB21L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.753509e-02	ci left: 2.434149e-01	ci right 2.605298e-01	k: 2519	n:10000
KS ci ratio: 2.013206e-02	ci left: 7.832008e-01	ci right 7.992292e-01	k: 7913	n:10000
MAB21L1   10000 perm   1 sec   (6719 perm/sec)   p_kst 7.913000e-01   p_cons 2.519000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000100/MAB21L1.3_1084_10000_0.7913_0.2519_1.png
                gene_name: MAB21L1
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 59 percent done.
MACROD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.834130e-02	ci left: 5.011505e-01	ci right 5.208430e-01	k: 5110	n:10000
Cons ci ratio: 2.226371e-02	ci left: 7.475594e-01	ci right 7.644912e-01	k: 7561	n:10000
KS ci ratio: 5.167123e-02	ci left: 3.557534e-01	ci right 3.747251e-01	k: 3652	n:10000
MACROD1   10000 perm   2 sec   (6517 perm/sec)   p_kst 3.652000e-01   p_cons 7.561000e-01   p_joint 5.110000e-01

Outputting figure to mutsig2_images.part000000000100/MACROD1.3_1018_10000_0.3652_0.7561_0.511.png
                gene_name: MACROD1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 62 percent done.
LSS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.622981e-02	ci left: 8.466204e-01	ci right 8.605729e-01	k: 8537	n:10000
Cons ci ratio: 4.078604e-02	ci left: 4.702649e-01	ci right 4.899467e-01	k: 4801	n:10000
KS ci ratio: 5.619830e-02	ci left: 3.180054e-01	ci right 3.364953e-01	k: 3272	n:10000
LSS   10000 perm   2 sec   (6431 perm/sec)   p_kst 3.272000e-01   p_cons 4.801000e-01   p_joint 8.537000e-01

Outputting figure to mutsig2_images.part000000000100/LSS.2_2287_10000_0.3272_0.4801_0.8537.png
                gene_name: LSS
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 65 percent done.
LTA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.642336e-02	ci left: 5.267670e-01	ci right 5.464117e-01	k: 5366	n:10000
Cons ci ratio: 2.280068e-02	ci left: 7.385604e-01	ci right 7.556954e-01	k: 7472	n:10000
KS ci ratio: 4.351411e-02	ci left: 4.381199e-01	ci right 4.577105e-01	k: 4479	n:10000
LTA   10000 perm   1 sec   (7110 perm/sec)   p_kst 4.479000e-01   p_cons 7.472000e-01   p_joint 5.366000e-01

Outputting figure to mutsig2_images.part000000000100/LTA.2_630_10000_0.4479_0.7472_0.5366.png
                gene_name: LTA
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 68 percent done.
LTA4H
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.387683e-02	ci left: 5.626335e-01	ci right 5.821243e-01	k: 5724	n:10000
Cons ci ratio: 7.564171e-02	ci left: 2.036295e-01	ci right 2.197388e-01	k: 2116	n:10000
KS ci ratio: 2.711180e-02	ci left: 6.671299e-01	ci right 6.855672e-01	k: 6764	n:10000
LTA4H   10000 perm   2 sec   (6446 perm/sec)   p_kst 6.764000e-01   p_cons 2.116000e-01   p_joint 5.724000e-01

Outputting figure to mutsig2_images.part000000000100/LTA4H.2_1912_10000_0.6764_0.2116_0.5724.png
                gene_name: LTA4H
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 70 percent done.
LTBP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.614384e-02	ci left: 2.014608e-01	ci right 2.175088e-01	k: 2094	n:10000
Cons ci ratio: 7.237715e-02	ci left: 2.185242e-01	ci right 2.350353e-01	k: 2267	n:10000
KS ci ratio: 6.071583e-02	ci left: 2.851807e-01	ci right 3.031394e-01	k: 2941	n:10000
LTBP3   10000 perm   2 sec   (5575 perm/sec)   p_kst 2.941000e-01   p_cons 2.267000e-01   p_joint 2.094000e-01

Outputting figure to mutsig2_images.part000000000100/LTBP3.2_4024_10000_0.2941_0.2267_0.2094.png
                gene_name: LTBP3
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 73 percent done.
LTV1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.289569e-02	ci left: 8.964156e-01	ci right 9.081488e-01	k: 9024	n:10000
Cons ci ratio: 4.735700e-02	ci left: 3.968515e-01	ci right 4.162030e-01	k: 4065	n:10000
KS ci ratio: 2.013206e-02	ci left: 7.832008e-01	ci right 7.992292e-01	k: 7913	n:10000
LTV1   10000 perm   2 sec   (6634 perm/sec)   p_kst 7.913000e-01   p_cons 4.065000e-01   p_joint 9.024000e-01

Outputting figure to mutsig2_images.part000000000100/LTV1.2_1472_10000_0.7913_0.4065_0.9024.png
                gene_name: LTV1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 76 percent done.
LUC7L2
Processing conservation and coverage...
Processing mutations... 
Skipping 2 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 78 percent done.
LUM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.088077e-01	ci left: 4.407042e-03	ci right 7.491475e-03	k: 58	n:10000
Cons ci ratio: 1.658582e-01	ci left: 4.849762e-02	ci right 5.736510e-02	k: 528	n:10000
KS ci ratio: 5.088077e-01	ci left: 4.407042e-03	ci right 7.491475e-03	k: 58	n:10000
LUM   10000 perm   1 sec   (7096 perm/sec)   p_kst 5.800000e-03   p_cons 5.280000e-02   p_joint 5.800000e-03

Joint ci ratio: 3.693575e-01	ci left: 4.567803e-03	ci right 6.679840e-03	k: 111	n:20000
Cons ci ratio: 1.180498e-01	ci left: 4.915761e-02	ci right 5.537338e-02	k: 1044	n:20000
KS ci ratio: 3.693575e-01	ci left: 4.567803e-03	ci right 6.679840e-03	k: 111	n:20000
LUM   20000 perm   3 sec   (6233 perm/sec)   p_kst 5.550000e-03   p_cons 5.220000e-02   p_joint 5.550000e-03

Joint ci ratio: 2.989094e-01	ci left: 4.848747e-03	ci right 6.582421e-03	k: 170	n:30000
Cons ci ratio: 9.624228e-02	ci left: 4.987266e-02	ci right 5.494779e-02	k: 1571	n:30000
KS ci ratio: 2.989094e-01	ci left: 4.848747e-03	ci right 6.582421e-03	k: 170	n:30000
LUM   30000 perm   5 sec   (5912 perm/sec)   p_kst 5.666667e-03   p_cons 5.236667e-02   p_joint 5.666667e-03

Joint ci ratio: 2.629550e-01	ci left: 4.798815e-03	ci right 6.274366e-03	k: 220	n:40000
Cons ci ratio: 8.307704e-02	ci left: 5.053042e-02	ci right 5.493480e-02	k: 2108	n:40000
KS ci ratio: 2.629550e-01	ci left: 4.798815e-03	ci right 6.274366e-03	k: 220	n:40000
LUM   40000 perm   7 sec   (5706 perm/sec)   p_kst 5.500000e-03   p_cons 5.270000e-02   p_joint 5.500000e-03

Joint ci ratio: 2.370352e-01	ci left: 4.795300e-03	ci right 6.103127e-03	k: 271	n:50000
Cons ci ratio: 7.456441e-02	ci left: 5.042356e-02	ci right 5.434861e-02	k: 2618	n:50000
KS ci ratio: 2.370352e-01	ci left: 4.795300e-03	ci right 6.103127e-03	k: 271	n:50000
LUM   50000 perm   9 sec   (5537 perm/sec)   p_kst 5.420000e-03   p_cons 5.236000e-02   p_joint 5.420000e-03

Joint ci ratio: 2.213467e-01	ci left: 4.624464e-03	ci right 5.790851e-03	k: 311	n:60000
Cons ci ratio: 6.844551e-02	ci left: 5.005645e-02	ci right 5.362039e-02	k: 3109	n:60000
KS ci ratio: 2.213467e-01	ci left: 4.624464e-03	ci right 5.790851e-03	k: 311	n:60000
LUM   60000 perm   11 sec   (5401 perm/sec)   p_kst 5.183333e-03   p_cons 5.181667e-02   p_joint 5.183333e-03

Joint ci ratio: 2.066465e-01	ci left: 4.585774e-03	ci right 5.655881e-03	k: 357	n:70000
Cons ci ratio: 6.350069e-02	ci left: 4.998676e-02	ci right 5.327910e-02	k: 3613	n:70000
KS ci ratio: 2.066465e-01	ci left: 4.585774e-03	ci right 5.655881e-03	k: 357	n:70000
LUM   70000 perm   13 sec   (5280 perm/sec)   p_kst 5.100000e-03   p_cons 5.161429e-02   p_joint 5.100000e-03

Joint ci ratio: 1.967479e-01	ci left: 4.451673e-03	ci right 5.434757e-03	k: 394	n:80000
Cons ci ratio: 5.917539e-02	ci left: 5.045915e-02	ci right 5.354844e-02	k: 4159	n:80000
KS ci ratio: 1.967479e-01	ci left: 4.451673e-03	ci right 5.434757e-03	k: 394	n:80000
LUM   80000 perm   15 sec   (5170 perm/sec)   p_kst 4.925000e-03   p_cons 5.198750e-02   p_joint 4.925000e-03

Joint ci ratio: 1.862077e-01	ci left: 4.443664e-03	ci right 5.366470e-03	k: 440	n:90000
Cons ci ratio: 5.576600e-02	ci left: 5.059124e-02	ci right 5.350438e-02	k: 4683	n:90000
KS ci ratio: 1.862077e-01	ci left: 4.443664e-03	ci right 5.366470e-03	k: 440	n:90000
LUM   90000 perm   18 sec   (5066 perm/sec)   p_kst 4.888889e-03   p_cons 5.203333e-02   p_joint 4.888889e-03

Joint ci ratio: 1.773813e-01	ci left: 4.428824e-03	ci right 5.300276e-03	k: 485	n:100000
Cons ci ratio: 5.298728e-02	ci left: 5.051340e-02	ci right 5.327266e-02	k: 5188	n:100000
KS ci ratio: 1.773813e-01	ci left: 4.428824e-03	ci right 5.300276e-03	k: 485	n:100000
LUM   100000 perm   20 sec   (4968 perm/sec)   p_kst 4.850000e-03   p_cons 5.188000e-02   p_joint 4.850000e-03

Joint ci ratio: 1.701854e-01	ci left: 4.391411e-03	ci right 5.216849e-03	k: 527	n:110000
Cons ci ratio: 5.066152e-02	ci left: 5.030898e-02	ci right 5.293291e-02	k: 5677	n:110000
KS ci ratio: 1.701854e-01	ci left: 4.391411e-03	ci right 5.216849e-03	k: 527	n:110000
LUM   110000 perm   23 sec   (4876 perm/sec)   p_kst 4.790909e-03   p_cons 5.160909e-02   p_joint 4.790909e-03

Joint ci ratio: 1.616759e-01	ci left: 4.480761e-03	ci right 5.276790e-03	k: 584	n:120000
Cons ci ratio: 4.836977e-02	ci left: 5.063513e-02	ci right 5.315325e-02	k: 6226	n:120000
KS ci ratio: 1.616759e-01	ci left: 4.480761e-03	ci right 5.276790e-03	k: 584	n:120000
LUM   120000 perm   25 sec   (4788 perm/sec)   p_kst 4.866667e-03   p_cons 5.188333e-02   p_joint 4.866667e-03

Joint ci ratio: 1.555491e-01	ci left: 4.483279e-03	ci right 5.246757e-03	k: 631	n:130000
Cons ci ratio: 4.646825e-02	ci left: 5.069272e-02	ci right 5.311193e-02	k: 6746	n:130000
KS ci ratio: 1.555491e-01	ci left: 4.483279e-03	ci right 5.246757e-03	k: 631	n:130000
LUM   130000 perm   28 sec   (4702 perm/sec)   p_kst 4.853846e-03   p_cons 5.189231e-02   p_joint 4.853846e-03

Joint ci ratio: 1.492986e-01	ci left: 4.534060e-03	ci right 5.272389e-03	k: 685	n:140000
Cons ci ratio: 4.469042e-02	ci left: 5.092750e-02	ci right 5.326253e-02	k: 7292	n:140000
KS ci ratio: 1.492986e-01	ci left: 4.534060e-03	ci right 5.272389e-03	k: 685	n:140000
LUM   140000 perm   30 sec   (4622 perm/sec)   p_kst 4.892857e-03   p_cons 5.208571e-02   p_joint 4.892857e-03

Joint ci ratio: 1.451319e-01	ci left: 4.488627e-03	ci right 5.197388e-03	k: 725	n:150000
Cons ci ratio: 4.314864e-02	ci left: 5.102691e-02	ci right 5.328377e-02	k: 7822	n:150000
KS ci ratio: 1.451319e-01	ci left: 4.488627e-03	ci right 5.197388e-03	k: 725	n:150000
LUM   150000 perm   33 sec   (4543 perm/sec)   p_kst 4.833333e-03   p_cons 5.214667e-02   p_joint 4.833333e-03

Joint ci ratio: 1.403777e-01	ci left: 4.509431e-03	ci right 5.196201e-03	k: 775	n:160000
Cons ci ratio: 4.176935e-02	ci left: 5.108417e-02	ci right 5.326960e-02	k: 8347	n:160000
KS ci ratio: 1.403777e-01	ci left: 4.509431e-03	ci right 5.196201e-03	k: 775	n:160000
LUM   160000 perm   36 sec   (4468 perm/sec)   p_kst 4.843750e-03   p_cons 5.216875e-02   p_joint 4.843750e-03

Joint ci ratio: 1.360621e-01	ci left: 4.528121e-03	ci right 5.194820e-03	k: 825	n:170000
Cons ci ratio: 4.046390e-02	ci left: 5.125805e-02	ci right 5.338078e-02	k: 8893	n:170000
KS ci ratio: 1.360621e-01	ci left: 4.528121e-03	ci right 5.194820e-03	k: 825	n:170000
LUM   170000 perm   39 sec   (4394 perm/sec)   p_kst 4.852941e-03   p_cons 5.231176e-02   p_joint 4.852941e-03

Joint ci ratio: 1.318194e-01	ci left: 4.566513e-03	ci right 5.216257e-03	k: 879	n:180000
Cons ci ratio: 3.931763e-02	ci left: 5.130347e-02	ci right 5.336653e-02	k: 9419	n:180000
KS ci ratio: 1.318194e-01	ci left: 4.566513e-03	ci right 5.216257e-03	k: 879	n:180000
LUM   180000 perm   42 sec   (4326 perm/sec)   p_kst 4.883333e-03   p_cons 5.232778e-02   p_joint 4.883333e-03

Joint ci ratio: 1.285743e-01	ci left: 4.555297e-03	ci right 5.186272e-03	k: 924	n:190000
Cons ci ratio: 3.827168e-02	ci left: 5.132401e-02	ci right 5.333178e-02	k: 9941	n:190000
KS ci ratio: 1.285743e-01	ci left: 4.555297e-03	ci right 5.186272e-03	k: 924	n:190000
LUM   190000 perm   45 sec   (4256 perm/sec)   p_kst 4.863158e-03   p_cons 5.232105e-02   p_joint 4.863158e-03

Joint ci ratio: 1.254927e-01	ci left: 4.550222e-03	ci right 5.164264e-03	k: 970	n:200000
Cons ci ratio: 3.725994e-02	ci left: 5.146210e-02	ci right 5.342090e-02	k: 10487	n:200000
KS ci ratio: 1.254927e-01	ci left: 4.550222e-03	ci right 5.164264e-03	k: 970	n:200000
LUM   200000 perm   48 sec   (4192 perm/sec)   p_kst 4.850000e-03   p_cons 5.243500e-02   p_joint 4.850000e-03

Joint ci ratio: 1.225016e-01	ci left: 4.555028e-03	ci right 5.154004e-03	k: 1018	n:210000
Cons ci ratio: 3.641156e-02	ci left: 5.135161e-02	ci right 5.326077e-02	k: 10983	n:210000
KS ci ratio: 1.225016e-01	ci left: 4.555028e-03	ci right 5.154004e-03	k: 1018	n:210000
LUM   210000 perm   51 sec   (4127 perm/sec)   p_kst 4.847619e-03   p_cons 5.230000e-02   p_joint 4.847619e-03

Joint ci ratio: 1.198841e-01	ci left: 4.546324e-03	ci right 5.130476e-03	k: 1063	n:220000
Cons ci ratio: 3.556795e-02	ci left: 5.139136e-02	ci right 5.325682e-02	k: 11510	n:220000
KS ci ratio: 1.198841e-01	ci left: 4.546324e-03	ci right 5.130476e-03	k: 1063	n:220000
LUM   220000 perm   54 sec   (4066 perm/sec)   p_kst 4.831818e-03   p_cons 5.231818e-02   p_joint 4.831818e-03

Joint ci ratio: 1.169516e-01	ci left: 4.576490e-03	ci right 5.149141e-03	k: 1117	n:230000
Cons ci ratio: 3.476060e-02	ci left: 5.148417e-02	ci right 5.330974e-02	k: 12050	n:230000
KS ci ratio: 1.169516e-01	ci left: 4.576490e-03	ci right 5.149141e-03	k: 1117	n:230000
LUM   230000 perm   57 sec   (4006 perm/sec)   p_kst 4.856522e-03   p_cons 5.239130e-02   p_joint 4.856522e-03

Joint ci ratio: 1.140289e-01	ci left: 4.620495e-03	ci right 5.183231e-03	k: 1175	n:240000
Cons ci ratio: 3.399443e-02	ci left: 5.160276e-02	ci right 5.339140e-02	k: 12598	n:240000
KS ci ratio: 1.140289e-01	ci left: 4.620495e-03	ci right 5.183231e-03	k: 1175	n:240000
LUM   240000 perm   61 sec   (3952 perm/sec)   p_kst 4.895833e-03   p_cons 5.249167e-02   p_joint 4.895833e-03

Joint ci ratio: 1.121861e-01	ci left: 4.587257e-03	ci right 5.136319e-03	k: 1214	n:250000
Cons ci ratio: 3.336393e-02	ci left: 5.145431e-02	ci right 5.320409e-02	k: 13081	n:250000
KS ci ratio: 1.121861e-01	ci left: 4.587257e-03	ci right 5.136319e-03	k: 1214	n:250000
LUM   250000 perm   64 sec   (3900 perm/sec)   p_kst 4.856000e-03   p_cons 5.232400e-02   p_joint 4.856000e-03

Joint ci ratio: 1.106963e-01	ci left: 4.534202e-03	ci right 5.069236e-03	k: 1247	n:260000
Cons ci ratio: 3.276980e-02	ci left: 5.130993e-02	ci right 5.302315e-02	k: 13562	n:260000
KS ci ratio: 1.106963e-01	ci left: 4.534202e-03	ci right 5.069236e-03	k: 1247	n:260000
LUM   260000 perm   68 sec   (3833 perm/sec)   p_kst 4.796154e-03   p_cons 5.216154e-02   p_joint 4.796154e-03

Joint ci ratio: 1.082084e-01	ci left: 4.575208e-03	ci right 5.102174e-03	k: 1305	n:270000
Cons ci ratio: 3.211233e-02	ci left: 5.146320e-02	ci right 5.314642e-02	k: 14121	n:270000
KS ci ratio: 1.082084e-01	ci left: 4.575208e-03	ci right 5.102174e-03	k: 1305	n:270000
LUM   270000 perm   71 sec   (3782 perm/sec)   p_kst 4.833333e-03   p_cons 5.230000e-02   p_joint 4.833333e-03

Joint ci ratio: 1.064708e-01	ci left: 4.561255e-03	ci right 5.077648e-03	k: 1348	n:280000
Cons ci ratio: 3.153032e-02	ci left: 5.148886e-02	ci right 5.314185e-02	k: 14647	n:280000
KS ci ratio: 1.064708e-01	ci left: 4.561255e-03	ci right 5.077648e-03	k: 1348	n:280000
LUM   280000 perm   75 sec   (3730 perm/sec)   p_kst 4.814286e-03   p_cons 5.231071e-02   p_joint 4.814286e-03

Joint ci ratio: 1.047766e-01	ci left: 4.551685e-03	ci right 5.058289e-03	k: 1392	n:290000
Cons ci ratio: 3.093799e-02	ci left: 5.164309e-02	ci right 5.326932e-02	k: 15211	n:290000
KS ci ratio: 1.047766e-01	ci left: 4.551685e-03	ci right 5.058289e-03	k: 1392	n:290000
LUM   290000 perm   79 sec   (3681 perm/sec)   p_kst 4.800000e-03   p_cons 5.245172e-02   p_joint 4.800000e-03

Joint ci ratio: 1.029808e-01	ci left: 4.559053e-03	ci right 5.057254e-03	k: 1441	n:300000
Cons ci ratio: 3.041447e-02	ci left: 5.166816e-02	ci right 5.326717e-02	k: 15739	n:300000
KS ci ratio: 1.029808e-01	ci left: 4.559053e-03	ci right 5.057254e-03	k: 1441	n:300000
LUM   300000 perm   83 sec   (3636 perm/sec)   p_kst 4.803333e-03   p_cons 5.246333e-02   p_joint 4.803333e-03

Joint ci ratio: 1.013085e-01	ci left: 4.562870e-03	ci right 5.052910e-03	k: 1489	n:310000
Cons ci ratio: 2.992443e-02	ci left: 5.166620e-02	ci right 5.323895e-02	k: 16259	n:310000
KS ci ratio: 1.013085e-01	ci left: 4.562870e-03	ci right 5.052910e-03	k: 1489	n:310000
LUM   310000 perm   87 sec   (3581 perm/sec)   p_kst 4.803226e-03   p_cons 5.244839e-02   p_joint 4.803226e-03

Joint ci ratio: 1.001743e-01	ci left: 4.523848e-03	ci right 5.003938e-03	k: 1523	n:320000
Cons ci ratio: 2.943882e-02	ci left: 5.172663e-02	ci right 5.327523e-02	k: 16799	n:320000
KS ci ratio: 1.001743e-01	ci left: 4.523848e-03	ci right 5.003938e-03	k: 1523	n:320000
LUM   320000 perm   90 sec   (3537 perm/sec)   p_kst 4.759375e-03   p_cons 5.249687e-02   p_joint 4.759375e-03

Joint ci ratio: 9.850716e-02	ci left: 4.540425e-03	ci right 5.013791e-03	k: 1575	n:330000
Cons ci ratio: 2.898405e-02	ci left: 5.175651e-02	ci right 5.328167e-02	k: 17330	n:330000
KS ci ratio: 9.850716e-02	ci left: 4.540425e-03	ci right 5.013791e-03	k: 1575	n:330000
LUM   330000 perm   95 sec   (3486 perm/sec)   p_kst 4.772727e-03   p_cons 5.251515e-02   p_joint 4.772727e-03

Outputting figure to mutsig2_images.part000000000100/LUM.2_1025_330000_0.0047727_0.052515_0.0047727.png
                gene_name: LUM
               theta_stop: 0.099 
                    nperm: 330000 
                     p_ks: 0.0048 
        ci_ks_bounds_left: 0.0045 
       ci_ks_bounds_right: 0.0050 
                   p_cons: 0.053 
      ci_cons_bounds_left: 0.052 
     ci_cons_bounds_right: 0.053 
                  p_joint: 0.0048 
     ci_joint_bounds_left: 0.0045 
    ci_joint_bounds_right: 0.0050 

Current progress: 81 percent done.
LY6G5B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.728533e-02	ci left: 6.643103e-01	ci right 6.827885e-01	k: 6736	n:10000
Cons ci ratio: 3.935118e-02	ci left: 4.881520e-01	ci right 5.078491e-01	k: 4980	n:10000
KS ci ratio: 1.883211e-02	ci left: 8.047094e-01	ci right 8.201081e-01	k: 8125	n:10000
LY6G5B   10000 perm   1 sec   (7431 perm/sec)   p_kst 8.125000e-01   p_cons 4.980000e-01   p_joint 6.736000e-01

Outputting figure to mutsig2_images.part000000000100/LY6G5B.2_618_10000_0.8125_0.498_0.6736.png
                gene_name: LY6G5B
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 84 percent done.
LY6G6F
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.327177e-02	ci left: 5.714578e-01	ci right 5.908949e-01	k: 5812	n:10000
KS ci ratio: 7.764659e-02	ci left: 1.951537e-01	ci right 2.110196e-01	k: 2030	n:10000
LY6G6F   10000 perm   1 sec   (7297 perm/sec)   p_kst 2.030000e-01   p_cons 5.812000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000100/LY6G6F.2_918_10000_0.203_0.5812_1.png
                gene_name: LY6G6F
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
LYN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.124773e-01	ci left: 1.021764e-01	ci right 1.144528e-01	k: 1082	n:10000
Cons ci ratio: 4.789100e-02	ci left: 3.914738e-01	ci right 4.107839e-01	k: 4011	n:10000
KS ci ratio: 2.296881e-01	ci left: 2.504340e-02	ci right 3.163520e-02	k: 282	n:10000
LYN   10000 perm   2 sec   (6646 perm/sec)   p_kst 2.820000e-02   p_cons 4.011000e-01   p_joint 1.082000e-01

Joint ci ratio: 7.828409e-02	ci left: 1.070221e-01	ci right 1.157912e-01	k: 2227	n:20000
Cons ci ratio: 3.379339e-02	ci left: 3.953441e-01	ci right 4.089844e-01	k: 8043	n:20000
KS ci ratio: 1.636116e-01	ci left: 2.561344e-02	ci right 3.022518e-02	k: 557	n:20000
LYN   20000 perm   3 sec   (5860 perm/sec)   p_kst 2.785000e-02   p_cons 4.021500e-01   p_joint 1.113500e-01

Joint ci ratio: 6.386534e-02	ci left: 1.079923e-01	ci right 1.151498e-01	k: 3346	n:30000
Cons ci ratio: 2.755389e-02	ci left: 3.972762e-01	ci right 4.084093e-01	k: 12085	n:30000
KS ci ratio: 1.312683e-01	ci left: 2.696883e-02	ci right 3.078980e-02	k: 865	n:30000
LYN   30000 perm   5 sec   (5546 perm/sec)   p_kst 2.883333e-02   p_cons 4.028333e-01   p_joint 1.115333e-01

Joint ci ratio: 5.565131e-02	ci left: 1.072706e-01	ci right 1.134361e-01	k: 4413	n:40000
Cons ci ratio: 2.382229e-02	ci left: 3.988366e-01	ci right 4.084774e-01	k: 16146	n:40000
KS ci ratio: 1.142265e-01	ci left: 2.696406e-02	ci right 3.025485e-02	k: 1143	n:40000
LYN   40000 perm   7 sec   (5349 perm/sec)   p_kst 2.857500e-02   p_cons 4.036500e-01   p_joint 1.103250e-01

Joint ci ratio: 5.009564e-02	ci left: 1.063603e-01	ci right 1.118452e-01	k: 5454	n:50000
Cons ci ratio: 2.128672e-02	ci left: 3.998144e-01	ci right 4.084367e-01	k: 20206	n:50000
KS ci ratio: 1.021676e-01	ci left: 2.713693e-02	ci right 3.007814e-02	k: 1429	n:50000
LYN   50000 perm   10 sec   (5201 perm/sec)   p_kst 2.858000e-02   p_cons 4.041200e-01   p_joint 1.090800e-01

Joint ci ratio: 1.793025e-02	ci left: 4.394028e-01	ci right 4.473694e-01	k: 26603	n:60000
Cons ci ratio: 1.835161e-02	ci left: 4.279815e-01	ci right 4.359251e-01	k: 25917	n:60000
KS ci ratio: 9.368832e-02	ci left: 2.702021e-02	ci right 2.969234e-02	k: 1700	n:60000
LYN   60000 perm   12 sec   (5081 perm/sec)   p_kst 2.833333e-02   p_cons 4.319500e-01   p_joint 4.433833e-01

Outputting figure to mutsig2_images.part000000000100/LYN.2_1587_60000_0.028333_0.43195_0.44338.png
                gene_name: LYN
               theta_stop: 0.094 
                    nperm: 60000 
                     p_ks: 0.028 
        ci_ks_bounds_left: 0.027 
       ci_ks_bounds_right: 0.030 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.45 

Current progress: 89 percent done.
LYSMD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.562896e-02	ci left: 3.224721e-01	ci right 3.410260e-01	k: 3317	n:10000
Cons ci ratio: 4.773191e-02	ci left: 3.930670e-01	ci right 4.123897e-01	k: 4027	n:10000
KS ci ratio: 4.012206e-02	ci left: 4.784575e-01	ci right 4.981493e-01	k: 4883	n:10000
LYSMD1   10000 perm   1 sec   (7170 perm/sec)   p_kst 4.883000e-01   p_cons 4.027000e-01   p_joint 3.317000e-01

Outputting figure to mutsig2_images.part000000000100/LYSMD1.2_736_10000_0.4883_0.4027_0.3317.png
                gene_name: LYSMD1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 92 percent done.
LYVE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.389164e-01	ci left: 1.096414e-02	ci right 1.552595e-02	k: 131	n:10000
Cons ci ratio: 4.204025e-02	ci left: 4.551856e-01	ci right 4.748348e-01	k: 4650	n:10000
KS ci ratio: 4.136457e-01	ci left: 7.063669e-03	ci right 1.083076e-02	k: 88	n:10000
LYVE1   10000 perm   1 sec   (6679 perm/sec)   p_kst 8.800000e-03   p_cons 4.650000e-01   p_joint 1.310000e-02

Joint ci ratio: 1.790652e-01	ci left: 2.130163e-02	ci right 2.553849e-02	k: 467	n:20000
Cons ci ratio: 3.017226e-02	ci left: 4.507270e-01	ci right 4.645854e-01	k: 9153	n:20000
KS ci ratio: 2.876468e-01	ci left: 7.877125e-03	ci right 1.056846e-02	k: 183	n:20000
LYVE1   20000 perm   3 sec   (6026 perm/sec)   p_kst 9.150000e-03   p_cons 4.576500e-01   p_joint 2.335000e-02

Joint ci ratio: 1.301125e-01	ci left: 2.745293e-02	ci right 3.130560e-02	k: 880	n:30000
Cons ci ratio: 2.480648e-02	ci left: 4.485872e-01	ci right 4.598884e-01	k: 13627	n:30000
KS ci ratio: 2.323291e-01	ci left: 8.307694e-03	ci right 1.052221e-02	k: 281	n:30000
LYVE1   30000 perm   5 sec   (5788 perm/sec)   p_kst 9.366667e-03   p_cons 4.542333e-01   p_joint 2.933333e-02

Joint ci ratio: 1.262748e-01	ci left: 2.203764e-02	ci right 2.503208e-02	k: 940	n:40000
Cons ci ratio: 2.160216e-02	ci left: 4.466144e-01	ci right 4.563927e-01	k: 18060	n:40000
KS ci ratio: 1.972692e-01	ci left: 8.810294e-03	ci right 1.076186e-02	k: 390	n:40000
LYVE1   40000 perm   7 sec   (5456 perm/sec)   p_kst 9.750000e-03   p_cons 4.515000e-01   p_joint 2.350000e-02

Joint ci ratio: 9.177922e-02	ci left: 3.358218e-02	ci right 3.683208e-02	k: 1759	n:50000
Cons ci ratio: 1.934436e-02	ci left: 4.465515e-01	ci right 4.552942e-01	k: 22546	n:50000
KS ci ratio: 1.765803e-01	ci left: 8.897727e-03	ci right 1.063990e-02	k: 487	n:50000
LYVE1   50000 perm   9 sec   (5338 perm/sec)   p_kst 9.740000e-03   p_cons 4.509200e-01   p_joint 3.518000e-02

Joint ci ratio: 1.352023e-01	ci left: 1.288178e-02	ci right 1.476568e-02	k: 828	n:60000
Cons ci ratio: 1.766685e-02	ci left: 4.467129e-01	ci right 4.546919e-01	k: 27042	n:60000
KS ci ratio: 1.605871e-01	ci left: 9.043231e-03	ci right 1.063805e-02	k: 589	n:60000
LYVE1   60000 perm   11 sec   (5233 perm/sec)   p_kst 9.816667e-03   p_cons 4.507000e-01   p_joint 1.380000e-02

Joint ci ratio: 1.111535e-01	ci left: 1.648595e-02	ci right 1.844006e-02	k: 1221	n:70000
Cons ci ratio: 1.639136e-02	ci left: 4.459527e-01	ci right 4.533372e-01	k: 31475	n:70000
KS ci ratio: 1.493705e-01	ci left: 9.014696e-03	ci right 1.048351e-02	k: 681	n:70000
LYVE1   70000 perm   14 sec   (5134 perm/sec)   p_kst 9.728571e-03   p_cons 4.496429e-01   p_joint 1.744286e-02

Joint ci ratio: 1.034322e-01	ci left: 1.672446e-02	ci right 1.856076e-02	k: 1410	n:80000
Cons ci ratio: 1.536355e-02	ci left: 4.451992e-01	ci right 4.521045e-01	k: 35892	n:80000
KS ci ratio: 1.393115e-01	ci left: 9.116886e-03	ci right 1.049401e-02	k: 783	n:80000
LYVE1   80000 perm   16 sec   (5042 perm/sec)   p_kst 9.787500e-03   p_cons 4.486500e-01   p_joint 1.762500e-02

Joint ci ratio: 8.897616e-02	ci left: 2.017096e-02	ci right 2.206008e-02	k: 1899	n:90000
Cons ci ratio: 1.449421e-02	ci left: 4.450804e-01	ci right 4.515896e-01	k: 40350	n:90000
KS ci ratio: 1.314948e-01	ci left: 9.134456e-03	ci right 1.043077e-02	k: 879	n:90000
LYVE1   90000 perm   18 sec   (4955 perm/sec)   p_kst 9.766667e-03   p_cons 4.483333e-01   p_joint 2.110000e-02

Joint ci ratio: 9.885776e-02	ci left: 1.471417e-02	ci right 1.625412e-02	k: 1547	n:100000
Cons ci ratio: 1.339097e-02	ci left: 4.583764e-01	ci right 4.645658e-01	k: 46147	n:100000
KS ci ratio: 1.248617e-01	ci left: 9.150244e-03	ci right 1.037844e-02	k: 975	n:100000
LYVE1   100000 perm   21 sec   (4870 perm/sec)   p_kst 9.750000e-03   p_cons 4.614700e-01   p_joint 1.547000e-02

Joint ci ratio: 9.439244e-02	ci left: 1.470721e-02	ci right 1.617305e-02	k: 1697	n:110000
Cons ci ratio: 1.275490e-02	ci left: 4.590230e-01	ci right 4.649244e-01	k: 50817	n:110000
KS ci ratio: 1.198769e-01	ci left: 9.049828e-03	ci right 1.021261e-02	k: 1058	n:110000
LYVE1   110000 perm   23 sec   (4787 perm/sec)   p_kst 9.618182e-03   p_cons 4.619727e-01   p_joint 1.542727e-02

Joint ci ratio: 9.116096e-02	ci left: 1.448275e-02	ci right 1.587416e-02	k: 1820	n:120000
Cons ci ratio: 1.223562e-02	ci left: 4.581848e-01	ci right 4.638338e-01	k: 55321	n:120000
KS ci ratio: 1.154960e-01	ci left: 8.958871e-03	ci right 1.006503e-02	k: 1140	n:120000
LYVE1   120000 perm   25 sec   (4708 perm/sec)   p_kst 9.500000e-03   p_cons 4.610083e-01   p_joint 1.516667e-02

Joint ci ratio: 8.798744e-02	ci left: 1.437634e-02	ci right 1.570696e-02	k: 1954	n:130000
Cons ci ratio: 1.175472e-02	ci left: 4.583335e-01	ci right 4.637606e-01	k: 59936	n:130000
KS ci ratio: 1.114706e-01	ci left: 8.897526e-03	ci right 9.955300e-03	k: 1224	n:130000
LYVE1   130000 perm   28 sec   (4630 perm/sec)   p_kst 9.415385e-03   p_cons 4.610462e-01   p_joint 1.503077e-02

Joint ci ratio: 8.473343e-02	ci left: 1.441872e-02	ci right 1.570148e-02	k: 2107	n:140000
Cons ci ratio: 1.132120e-02	ci left: 4.586931e-01	ci right 4.639228e-01	k: 64583	n:140000
KS ci ratio: 1.079637e-01	ci left: 8.824665e-03	ci right 9.838671e-03	k: 1305	n:140000
LYVE1   140000 perm   31 sec   (4557 perm/sec)   p_kst 9.321429e-03   p_cons 4.613071e-01   p_joint 1.505000e-02

Joint ci ratio: 8.613360e-02	ci left: 1.303300e-02	ci right 1.421258e-02	k: 2042	n:150000
Cons ci ratio: 1.094908e-02	ci left: 4.582483e-01	ci right 4.632999e-01	k: 69116	n:150000
KS ci ratio: 1.040138e-01	ci left: 8.891856e-03	ci right 9.873915e-03	k: 1406	n:150000
LYVE1   150000 perm   33 sec   (4482 perm/sec)   p_kst 9.373333e-03   p_cons 4.607733e-01   p_joint 1.361333e-02

Joint ci ratio: 8.381279e-02	ci left: 1.292188e-02	ci right 1.405835e-02	k: 2157	n:160000
Cons ci ratio: 1.059471e-02	ci left: 4.586426e-01	ci right 4.635338e-01	k: 73774	n:160000
KS ci ratio: 1.007720e-01	ci left: 8.896391e-03	ci right 9.846515e-03	k: 1498	n:160000
LYVE1   160000 perm   36 sec   (4413 perm/sec)   p_kst 9.362500e-03   p_cons 4.610875e-01   p_joint 1.348125e-02

Joint ci ratio: 8.139813e-02	ci left: 1.291067e-02	ci right 1.401189e-02	k: 2287	n:170000
Cons ci ratio: 1.027557e-02	ci left: 4.588516e-01	ci right 4.635968e-01	k: 78408	n:170000
KS ci ratio: 9.837887e-02	ci left: 8.797505e-03	ci right 9.713466e-03	k: 1572	n:170000
LYVE1   170000 perm   39 sec   (4346 perm/sec)   p_kst 9.247059e-03   p_cons 4.612235e-01   p_joint 1.345294e-02

Outputting figure to mutsig2_images.part000000000100/LYVE1.2_993_170000_0.0092471_0.46122_0.013453.png
                gene_name: LYVE1
               theta_stop: 0.098 
                    nperm: 170000 
                     p_ks: 0.0092 
        ci_ks_bounds_left: 0.0088 
       ci_ks_bounds_right: 0.0097 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.013 
     ci_joint_bounds_left: 0.013 
    ci_joint_bounds_right: 0.014 

Current progress: 95 percent done.
LZTS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.165041e-02	ci left: 9.133766e-01	ci right 9.241779e-01	k: 9189	n:10000
Cons ci ratio: 1.500129e-02	ci left: 8.656000e-01	ci right 8.787824e-01	k: 8723	n:10000
KS ci ratio: 5.352662e-02	ci left: 3.396528e-01	ci right 3.584352e-01	k: 3490	n:10000
LZTS2   10000 perm   2 sec   (6349 perm/sec)   p_kst 3.490000e-01   p_cons 8.723000e-01   p_joint 9.189000e-01

Outputting figure to mutsig2_images.part000000000100/LZTS2.2_2026_10000_0.349_0.8723_0.9189.png
                gene_name: LZTS2
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 97 percent done.
MAD2L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.672327e-02	ci left: 1.989967e-01	ci right 2.149743e-01	k: 2069	n:10000
KS ci ratio: 3.783063e-02	ci left: 5.078524e-01	ci right 5.275373e-01	k: 5177	n:10000
MAD2L1   10000 perm   1 sec   (7203 perm/sec)   p_kst 5.177000e-01   p_cons 2.069000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000100/MAD2L1.2_638_10000_0.5177_0.2069_1.png
                gene_name: MAD2L1
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000100
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 100 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1642>
Subject: Job 8004253: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1642>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000101> was used as the working directory.
Started at Sun Nov 11 15:07:59 2012
Results reported at Sun Nov 11 15:16:26 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000101.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000101.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 101  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000101.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    591.65 sec.
    Max Memory :      4759 MB
    Max Swap   :      7278 MB

    Max Processes  :         7
    Max Threads    :        94

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
101
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 101
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 101: processing genes 9048 - 9137
Calculating significance of each gene.
Using projection method.
9048	MAF1	1
9049	MAFB	1
9050	MAFF	1
9051	MAFG	1
9052	MAFK	1
9053	MAG	5.901846e-01
9054	MAGEA1	3.368813e-01
9055	MAGEA10	3.938898e-01
9056	MAGEA11	5.247590e-01
9057	MAGEA12	6.655005e-01
9058	MAGEA3	6.683805e-02
9059	MAGEA4	8.249019e-04
9060	MAGEA5	1
9061	MAGEA6	6.963656e-04
9062	MAGEA8	5.205272e-01
9063	MAGEB1	1
9064	MAGEB10	5.799375e-01
9065	MAGEB16	1.466663e-01
9066	MAGEB18	3.117245e-03
9067	MAGEB2	3.006243e-07
9068	MAGEB3	5.484540e-01
9069	MAGEB4	9.430539e-02
9070	MAGEB6	1
9071	MAGEC1	1.580191e-02
9072	MAGEC2	1.610971e-03
9073	MAGEC3	4.389623e-02
9074	MAGED1	8.693461e-01
9075	MAGED2	2.274518e-01
9076	MAGEE1	1.980127e-02
9077	MAGEE2	9.430564e-03
9078	MAGEF1	5.339686e-01
9079	MAGEH1	8.965935e-02
9080	MAGEL2	1
9081	MAGI1	8.730670e-01
9082	MAGI2	9.741260e-01
9083	MAGI3	9.630491e-01
9084	MAGIX	1.910014e-01
9085	MAGOH	1
9086	MAGOHB	1
9087	MAGT1	1
9088	MAK	7.735538e-01
9089	MAK16	1
9090	MAL	1
9091	MAL2	1.101335e-01
9092	MALL	1.086384e-01
9093	MALT1	8.496645e-01
9094	MAMDC2	7.509282e-01
9095	MAMDC4	7.403262e-01
9096	MAML1	7.831898e-01
9097	MAML2	3.382496e-01
9098	MAML3	1
9099	MAMLD1	7.650166e-01
9100	MAMSTR	1
9101	MAN1A1	2.122924e-01
9102	MAN1A2	1.366836e-01
9103	MAN1B1	1
9104	MAN1C1	4.801795e-01
9105	MAN2A1	6.244350e-01
9106	MAN2A2	8.976538e-01
9107	MAN2B1	1
9108	MAN2B2	7.651440e-01
9109	MAN2C1	6.060984e-01
9110	MANBA	8.621381e-01
9111	MANBAL	5.888767e-02
9112	MANEA	1.617182e-01
9113	MANEAL	7.410059e-01
9114	MANF	1
9115	MANSC1	1.110306e-01
9116	MAOA	1
9117	MAOB	1
9118	MAP1A	1
9119	MAP1B	1
9120	MAP1D	1
9121	MAP1LC3A	1
9122	MAP1LC3B	2.016753e-01
9123	MAP1LC3B2	2.364275e-01
9124	MAP1LC3C	1
9125	MAP1S	6.107993e-01
9126	MAP2	1
9127	MAP2K1	3.825382e-01
9128	MAP2K2	6.271270e-01
9129	MAP2K3	6.300431e-01
9130	MAP2K4	7.456388e-01
9131	MAP2K5	6.457429e-01
9132	MAP2K6	1
9133	MAP2K7	7.270975e-01
9134	MAP3K1	1
9135	MAP3K10	1
9136	MAP3K11	8.778704e-01
9137	MAP3K12	1
Done

Running MutSig 2:
Scatter job 101: processing genes 9048 - 9137
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
MAGEC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.434278e-01	ci left: 6.449503e-02	ci right 7.455749e-02	k: 694	n:10000
Cons ci ratio: 6.348859e-02	ci left: 2.671559e-01	ci right 2.847748e-01	k: 2759	n:10000
KS ci ratio: 2.937057e-01	ci left: 1.492852e-02	ci right 2.015795e-02	k: 174	n:10000
MAGEC1   10000 perm   2 sec   (4024 perm/sec)   p_kst 1.740000e-02   p_cons 2.759000e-01   p_joint 6.940000e-02

Joint ci ratio: 1.437437e-01	ci left: 3.326778e-02	ci right 3.846828e-02	k: 716	n:20000
Cons ci ratio: 4.454226e-02	ci left: 2.728909e-01	ci right 2.853734e-01	k: 5582	n:20000
KS ci ratio: 1.997038e-01	ci left: 1.701043e-02	ci right 2.083125e-02	k: 377	n:20000
MAGEC1   20000 perm   7 sec   (2758 perm/sec)   p_kst 1.885000e-02   p_cons 2.791000e-01   p_joint 3.580000e-02

Joint ci ratio: 1.376166e-01	ci left: 2.451849e-02	ci right 2.817402e-02	k: 789	n:30000
Cons ci ratio: 3.648196e-02	ci left: 2.728028e-01	ci right 2.829736e-01	k: 8336	n:30000
KS ci ratio: 1.660694e-01	ci left: 1.671749e-02	ci right 1.977682e-02	k: 546	n:30000
MAGEC1   30000 perm   10 sec   (2956 perm/sec)   p_kst 1.820000e-02   p_cons 2.778667e-01   p_joint 2.630000e-02

Joint ci ratio: 9.878489e-02	ci left: 3.600098e-02	ci right 3.976649e-02	k: 1514	n:40000
Cons ci ratio: 3.084204e-02	ci left: 2.832170e-01	ci right 2.921139e-01	k: 11506	n:40000
KS ci ratio: 1.462216e-01	ci left: 1.635811e-02	ci right 1.896259e-02	k: 705	n:40000
MAGEC1   40000 perm   13 sec   (3052 perm/sec)   p_kst 1.762500e-02   p_cons 2.876500e-01   p_joint 3.785000e-02

Joint ci ratio: 1.094337e-01	ci left: 2.364916e-02	ci right 2.640636e-02	k: 1250	n:50000
Cons ci ratio: 2.826026e-02	ci left: 2.739367e-01	ci right 2.818091e-01	k: 13893	n:50000
KS ci ratio: 1.305967e-01	ci left: 1.654294e-02	ci right 1.887354e-02	k: 884	n:50000
MAGEC1   50000 perm   16 sec   (3102 perm/sec)   p_kst 1.768000e-02   p_cons 2.778600e-01   p_joint 2.500000e-02

Joint ci ratio: 1.004910e-01	ci left: 2.348904e-02	ci right 2.599055e-02	k: 1483	n:60000
Cons ci ratio: 2.580098e-02	ci left: 2.742351e-01	ci right 2.814197e-01	k: 16669	n:60000
KS ci ratio: 1.195624e-01	ci left: 1.654673e-02	ci right 1.866696e-02	k: 1055	n:60000
MAGEC1   60000 perm   19 sec   (3117 perm/sec)   p_kst 1.758333e-02   p_cons 2.778167e-01   p_joint 2.471667e-02

Joint ci ratio: 7.721124e-02	ci left: 3.414137e-02	ci right 3.689731e-02	k: 2485	n:70000
Cons ci ratio: 2.327972e-02	ci left: 2.849176e-01	ci right 2.916428e-01	k: 20179	n:70000
KS ci ratio: 1.111073e-01	ci left: 1.649984e-02	ci right 1.845474e-02	k: 1222	n:70000
MAGEC1   70000 perm   22 sec   (3121 perm/sec)   p_kst 1.745714e-02   p_cons 2.882714e-01   p_joint 3.550000e-02

Joint ci ratio: 7.665983e-02	ci left: 3.043536e-02	ci right 3.287376e-02	k: 2531	n:80000
Cons ci ratio: 2.177543e-02	ci left: 2.851501e-01	ci right 2.914402e-01	k: 23063	n:80000
KS ci ratio: 1.042245e-01	ci left: 1.646866e-02	ci right 1.829158e-02	k: 1389	n:80000
MAGEC1   80000 perm   26 sec   (3112 perm/sec)   p_kst 1.736250e-02   p_cons 2.882875e-01   p_joint 3.163750e-02

Joint ci ratio: 7.360019e-02	ci left: 2.942981e-02	ci right 3.168948e-02	k: 2749	n:90000
Cons ci ratio: 2.054454e-02	ci left: 2.850429e-01	ci right 2.909708e-01	k: 25920	n:90000
KS ci ratio: 9.857711e-02	ci left: 1.641482e-02	ci right 1.812761e-02	k: 1553	n:90000
MAGEC1   90000 perm   29 sec   (3092 perm/sec)   p_kst 1.725556e-02   p_cons 2.880000e-01   p_joint 3.054444e-02

Outputting figure to mutsig2_images.part000000000101/MAGEC1.18_3437_90000_0.017256_0.288_0.030544.png
                gene_name: MAGEC1
               theta_stop: 0.099 
                    nperm: 90000 
                     p_ks: 0.017 
        ci_ks_bounds_left: 0.016 
       ci_ks_bounds_right: 0.018 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.031 
     ci_joint_bounds_left: 0.029 
    ci_joint_bounds_right: 0.032 

Current progress: 2 percent done.
MAGI2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.366825e-02	ci left: 3.384607e-01	ci right 3.572280e-01	k: 3478	n:10000
Cons ci ratio: 7.499060e-02	ci left: 2.064889e-01	ci right 2.226777e-01	k: 2145	n:10000
KS ci ratio: 6.132066e-02	ci left: 2.811186e-01	ci right 2.990038e-01	k: 2900	n:10000
MAGI2   10000 perm   2 sec   (4267 perm/sec)   p_kst 2.900000e-01   p_cons 2.145000e-01   p_joint 3.478000e-01

Outputting figure to mutsig2_images.part000000000101/MAGI2.12_4456_10000_0.29_0.2145_0.3478.png
                gene_name: MAGI2
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 4 percent done.
MAGEC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.596451e-02	ci left: 5.330750e-01	ci right 5.527000e-01	k: 5429	n:10000
KS ci ratio: 2.389968e-02	ci left: 7.201726e-01	ci right 7.376939e-01	k: 7290	n:10000
MAGEC3   10000 perm   2 sec   (5078 perm/sec)   p_kst 7.290000e-01   p_cons 5.429000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000101/MAGEC3.11_2330_10000_0.729_0.5429_1.png
                gene_name: MAGEC3
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 5 percent done.
MAGEB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.396687e-02	ci left: 5.613302e-01	ci right 5.808283e-01	k: 5711	n:10000
Cons ci ratio: 4.319010e-02	ci left: 4.418115e-01	ci right 4.614167e-01	k: 4516	n:10000
KS ci ratio: 3.229061e-02	ci left: 5.860046e-01	ci right 6.053396e-01	k: 5957	n:10000
MAGEB2   10000 perm   2 sec   (5483 perm/sec)   p_kst 5.957000e-01   p_cons 4.516000e-01   p_joint 5.711000e-01

Outputting figure to mutsig2_images.part000000000101/MAGEB2.9_964_10000_0.5957_0.4516_0.5711.png
                gene_name: MAGEB2
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 7 percent done.
MAGEE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.290821e-02	ci left: 3.449190e-01	ci right 3.637659e-01	k: 3543	n:10000
Cons ci ratio: 6.369573e-02	ci left: 2.658691e-01	ci right 2.834624e-01	k: 2746	n:10000
KS ci ratio: 1.007379e-01	ci left: 1.248365e-01	ci right 1.381789e-01	k: 1314	n:10000
MAGEE1   10000 perm   2 sec   (4961 perm/sec)   p_kst 1.314000e-01   p_cons 2.746000e-01   p_joint 3.543000e-01

Joint ci ratio: 5.699038e-02	ci left: 1.858196e-01	ci right 1.967703e-01	k: 3825	n:20000
Cons ci ratio: 4.700671e-02	ci left: 2.518971e-01	ci right 2.640733e-01	k: 5159	n:20000
KS ci ratio: 7.126491e-02	ci left: 1.266975e-01	ci right 1.361100e-01	k: 2627	n:20000
MAGEE1   20000 perm   4 sec   (4471 perm/sec)   p_kst 1.313500e-01   p_cons 2.579500e-01   p_joint 1.912500e-01

Outputting figure to mutsig2_images.part000000000101/MAGEE1.9_2878_20000_0.13135_0.25795_0.19125.png
                gene_name: MAGEE1
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 9 percent done.
MAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.195589e-02	ci left: 7.527183e-01	ci right 7.695293e-01	k: 7612	n:10000
Cons ci ratio: 3.188335e-02	ci left: 5.921269e-01	ci right 6.114137e-01	k: 6018	n:10000
KS ci ratio: 3.687240e-02	ci left: 5.206607e-01	ci right 5.403215e-01	k: 5305	n:10000
MAP2   10000 perm   2 sec   (4143 perm/sec)   p_kst 5.305000e-01   p_cons 6.018000e-01   p_joint 7.612000e-01

Outputting figure to mutsig2_images.part000000000101/MAP2.9_5804_10000_0.5305_0.6018_0.7612.png
                gene_name: MAP2
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 11 percent done.
MAGEA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.627528e-02	ci left: 1.353117e-01	ci right 1.490975e-01	k: 1421	n:10000
Cons ci ratio: 9.219358e-02	ci left: 1.459962e-01	ci right 1.602065e-01	k: 1530	n:10000
KS ci ratio: 1.229981e-01	ci left: 8.650182e-02	ci right 9.793702e-02	k: 921	n:10000
MAGEA6   10000 perm   2 sec   (5112 perm/sec)   p_kst 9.210000e-02   p_cons 1.530000e-01   p_joint 1.421000e-01

Joint ci ratio: 1.003771e-01	ci left: 6.728287e-02	ci right 7.444250e-02	k: 1416	n:20000
Cons ci ratio: 6.442338e-02	ci left: 1.511444e-01	ci right 1.612557e-01	k: 3123	n:20000
KS ci ratio: 8.527848e-02	ci left: 9.146078e-02	ci right 9.965724e-02	k: 1910	n:20000
MAGEA6   20000 perm   4 sec   (4610 perm/sec)   p_kst 9.550000e-02   p_cons 1.561500e-01   p_joint 7.080000e-02

Joint ci ratio: 7.051055e-02	ci left: 9.009719e-02	ci right 9.671513e-02	k: 2801	n:30000
Cons ci ratio: 4.939039e-02	ci left: 1.692300e-01	ci right 1.778333e-01	k: 5205	n:30000
KS ci ratio: 6.963676e-02	ci left: 9.219684e-02	ci right 9.888173e-02	k: 2865	n:30000
MAGEA6   30000 perm   7 sec   (4425 perm/sec)   p_kst 9.550000e-02   p_cons 1.735000e-01   p_joint 9.336667e-02

Outputting figure to mutsig2_images.part000000000101/MAGEA6.8_949_30000_0.0955_0.1735_0.093367.png
                gene_name: MAGEA6
               theta_stop: 0.071 
                    nperm: 30000 
                     p_ks: 0.096 
        ci_ks_bounds_left: 0.092 
       ci_ks_bounds_right: 0.099 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.093 
     ci_joint_bounds_left: 0.090 
    ci_joint_bounds_right: 0.097 

Current progress: 13 percent done.
MAGEA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.789283e-02	ci left: 8.200516e-01	ci right 8.349571e-01	k: 8276	n:10000
KS ci ratio: 1.176713e-02	ci left: 9.118323e-01	ci right 9.227232e-01	k: 9174	n:10000
MAGEA4   10000 perm   2 sec   (5339 perm/sec)   p_kst 9.174000e-01   p_cons 8.276000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000101/MAGEA4.7_958_10000_0.9174_0.8276_1.png
                gene_name: MAGEA4
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 15 percent done.
MAGEC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.941687e-02	ci left: 1.880620e-01	ci right 2.037156e-01	k: 1958	n:10000
Cons ci ratio: 2.185407e-03	ci left: 9.957201e-01	ci right 9.979750e-01	k: 9970	n:10000
KS ci ratio: 1.179891e-01	ci left: 9.350575e-02	ci right 1.053288e-01	k: 993	n:10000
MAGEC2   10000 perm   2 sec   (5703 perm/sec)   p_kst 9.930000e-02   p_cons 9.970000e-01   p_joint 1.958000e-01

Joint ci ratio: 4.948793e-02	ci left: 2.328549e-01	ci right 2.447211e-01	k: 4775	n:20000
Cons ci ratio: 1.557963e-03	ci left: 9.960277e-01	ci right 9.976224e-01	k: 19938	n:20000
KS ci ratio: 8.442632e-02	ci left: 9.317735e-02	ci right 1.014401e-01	k: 1945	n:20000
MAGEC2   20000 perm   4 sec   (5127 perm/sec)   p_kst 9.725000e-02   p_cons 9.969000e-01   p_joint 2.387500e-01

Outputting figure to mutsig2_images.part000000000101/MAGEC2.7_1126_20000_0.09725_0.9969_0.23875.png
                gene_name: MAGEC2
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.097 
        ci_ks_bounds_left: 0.093 
       ci_ks_bounds_right: 0.10 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 16 percent done.
MAGI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.927568e-02	ci left: 7.974007e-01	ci right 8.130211e-01	k: 8053	n:10000
Cons ci ratio: 4.933479e-03	ci left: 9.818827e-01	ci right 9.868293e-01	k: 9845	n:10000
KS ci ratio: 2.489961e-02	ci left: 7.035183e-01	ci right 7.213578e-01	k: 7125	n:10000
MAGI1   10000 perm   2 sec   (4457 perm/sec)   p_kst 7.125000e-01   p_cons 9.845000e-01   p_joint 8.053000e-01

Outputting figure to mutsig2_images.part000000000101/MAGI1.7_4715_10000_0.7125_0.9845_0.8053.png
                gene_name: MAGI1
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 18 percent done.
MANEA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.496310e-02	ci left: 1.679914e-01	ci right 1.829981e-01	k: 1754	n:10000
Cons ci ratio: 2.897138e-02	ci left: 6.372398e-01	ci right 6.560747e-01	k: 6467	n:10000
KS ci ratio: 1.332907e-01	ci left: 7.427098e-02	ci right 8.497542e-02	k: 795	n:10000
MANEA   10000 perm   2 sec   (5371 perm/sec)   p_kst 7.950000e-02   p_cons 6.467000e-01   p_joint 1.754000e-01

Joint ci ratio: 5.260585e-02	ci left: 2.115513e-01	ci right 2.230310e-01	k: 4345	n:20000
Cons ci ratio: 2.047329e-02	ci left: 6.403307e-01	ci right 6.536265e-01	k: 12940	n:20000
KS ci ratio: 9.519797e-02	ci left: 7.441774e-02	ci right 8.190544e-02	k: 1562	n:20000
MANEA   20000 perm   4 sec   (4834 perm/sec)   p_kst 7.810000e-02   p_cons 6.470000e-01   p_joint 2.172500e-01

Outputting figure to mutsig2_images.part000000000101/MANEA.7_1405_20000_0.0781_0.647_0.21725.png
                gene_name: MANEA
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.078 
        ci_ks_bounds_left: 0.074 
       ci_ks_bounds_right: 0.082 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 20 percent done.
MAGEB18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.387659e-02	ci left: 4.340298e-01	ci right 4.536029e-01	k: 4438	n:10000
Cons ci ratio: 6.973651e-02	ci left: 2.316560e-01	ci right 2.484957e-01	k: 2400	n:10000
KS ci ratio: 3.809659e-02	ci left: 5.043512e-01	ci right 5.240405e-01	k: 5142	n:10000
MAGEB18   10000 perm   2 sec   (5840 perm/sec)   p_kst 5.142000e-01   p_cons 2.400000e-01   p_joint 4.438000e-01

Outputting figure to mutsig2_images.part000000000101/MAGEB18.6_1036_10000_0.5142_0.24_0.4438.png
                gene_name: MAGEB18
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 22 percent done.
MAGEB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.406084e-02	ci left: 3.351826e-01	ci right 3.539081e-01	k: 3445	n:10000
Cons ci ratio: 3.120255e-02	ci left: 6.024681e-01	ci right 6.216665e-01	k: 6121	n:10000
KS ci ratio: 8.338283e-02	ci left: 1.733992e-01	ci right 1.885872e-01	k: 1809	n:10000
MAGEB4   10000 perm   2 sec   (5537 perm/sec)   p_kst 1.809000e-01   p_cons 6.121000e-01   p_joint 3.445000e-01

Outputting figure to mutsig2_images.part000000000101/MAGEB4.6_1045_10000_0.1809_0.6121_0.3445.png
                gene_name: MAGEB4
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 24 percent done.
MAGEE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.697569e-02	ci left: 6.693457e-01	ci right 6.877502e-01	k: 6786	n:10000
Cons ci ratio: 5.324517e-02	ci left: 3.420374e-01	ci right 3.608492e-01	k: 3514	n:10000
KS ci ratio: 3.307401e-02	ci left: 5.743665e-01	ci right 5.937845e-01	k: 5841	n:10000
MAGEE2   10000 perm   2 sec   (5635 perm/sec)   p_kst 5.841000e-01   p_cons 3.514000e-01   p_joint 6.786000e-01

Outputting figure to mutsig2_images.part000000000101/MAGEE2.6_1576_10000_0.5841_0.3514_0.6786.png
                gene_name: MAGEE2
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 25 percent done.
MAN2C1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.360105e-02	ci left: 8.863668e-01	ci right 8.986035e-01	k: 8926	n:10000
Cons ci ratio: 4.735700e-02	ci left: 3.968515e-01	ci right 4.162030e-01	k: 4065	n:10000
KS ci ratio: 3.373865e-02	ci left: 5.646388e-01	ci right 5.841179e-01	k: 5744	n:10000
MAN2C1   10000 perm   2 sec   (5347 perm/sec)   p_kst 5.744000e-01   p_cons 4.065000e-01   p_joint 8.926000e-01

Outputting figure to mutsig2_images.part000000000101/MAN2C1.6_3227_10000_0.5744_0.4065_0.8926.png
                gene_name: MAN2C1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 27 percent done.
MAP1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.969831e-02	ci left: 2.318535e-01	ci right 2.486980e-01	k: 2402	n:10000
Cons ci ratio: 3.622611e-02	ci left: 5.294702e-01	ci right 5.491069e-01	k: 5393	n:10000
KS ci ratio: 8.757768e-02	ci left: 1.595411e-01	ci right 1.742535e-01	k: 1668	n:10000
MAP1A   10000 perm   3 sec   (3844 perm/sec)   p_kst 1.668000e-01   p_cons 5.393000e-01   p_joint 2.402000e-01

Outputting figure to mutsig2_images.part000000000101/MAP1A.6_8424_10000_0.1668_0.5393_0.2402.png
                gene_name: MAP1A
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 29 percent done.
MAGEA11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.461249e-02	ci left: 1.691711e-01	ci right 1.842178e-01	k: 1766	n:10000
Cons ci ratio: 9.454540e-03	ci left: 9.404542e-01	ci right 9.494843e-01	k: 9451	n:10000
KS ci ratio: 1.040908e-01	ci left: 1.176982e-01	ci right 1.307216e-01	k: 1241	n:10000
MAGEA11   10000 perm   2 sec   (6068 perm/sec)   p_kst 1.241000e-01   p_cons 9.451000e-01   p_joint 1.766000e-01

Joint ci ratio: 6.535564e-02	ci left: 1.474447e-01	ci right 1.574565e-01	k: 3048	n:20000
Cons ci ratio: 6.763067e-03	ci left: 9.405694e-01	ci right 9.470008e-01	k: 18877	n:20000
KS ci ratio: 7.430647e-02	ci left: 1.175927e-01	ci right 1.267175e-01	k: 2442	n:20000
MAGEA11   20000 perm   4 sec   (5419 perm/sec)   p_kst 1.221000e-01   p_cons 9.438500e-01   p_joint 1.524000e-01

Outputting figure to mutsig2_images.part000000000101/MAGEA11.5_1319_20000_0.1221_0.94385_0.1524.png
                gene_name: MAGEA11
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 31 percent done.
MAML2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.372585e-02	ci left: 4.357256e-01	ci right 4.553061e-01	k: 4455	n:10000
Cons ci ratio: 2.362165e-02	ci left: 7.248183e-01	ci right 7.422455e-01	k: 7336	n:10000
KS ci ratio: 5.939737e-02	ci left: 2.942987e-01	ci right 3.124160e-01	k: 3033	n:10000
MAML2   10000 perm   2 sec   (4691 perm/sec)   p_kst 3.033000e-01   p_cons 7.336000e-01   p_joint 4.455000e-01

Outputting figure to mutsig2_images.part000000000101/MAML2.5_3491_10000_0.3033_0.7336_0.4455.png
                gene_name: MAML2
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 33 percent done.
MAN1A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.943000e-02	ci left: 3.764427e-01	ci right 3.956238e-01	k: 3860	n:10000
Cons ci ratio: 4.243945e-02	ci left: 4.504939e-01	ci right 4.701293e-01	k: 4603	n:10000
KS ci ratio: 6.924324e-02	ci left: 2.342244e-01	ci right 2.511257e-01	k: 2426	n:10000
MAN1A2   10000 perm   2 sec   (5201 perm/sec)   p_kst 2.426000e-01   p_cons 4.603000e-01   p_joint 3.860000e-01

Outputting figure to mutsig2_images.part000000000101/MAN1A2.5_1978_10000_0.2426_0.4603_0.386.png
                gene_name: MAN1A2
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 35 percent done.
MAG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.753709e-03	ci left: 9.830684e-01	ci right 9.878427e-01	k: 9856	n:10000
Cons ci ratio: 1.910346e-02	ci left: 8.002425e-01	ci right 8.157777e-01	k: 8081	n:10000
KS ci ratio: 1.878885e-02	ci left: 8.054202e-01	ci right 8.207969e-01	k: 8132	n:10000
MAG   10000 perm   2 sec   (5824 perm/sec)   p_kst 8.132000e-01   p_cons 8.081000e-01   p_joint 9.856000e-01

Outputting figure to mutsig2_images.part000000000101/MAG.4_1954_10000_0.8132_0.8081_0.9856.png
                gene_name: MAG
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 36 percent done.
MAGEB6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.972063e-02	ci left: 1.868804e-01	ci right 2.024978e-01	k: 1946	n:10000
Cons ci ratio: 4.032327e-02	ci left: 4.759595e-01	ci right 4.956488e-01	k: 4858	n:10000
KS ci ratio: 1.045236e-01	ci left: 1.168187e-01	ci right 1.298017e-01	k: 1232	n:10000
MAGEB6   10000 perm   2 sec   (5818 perm/sec)   p_kst 1.232000e-01   p_cons 4.858000e-01   p_joint 1.946000e-01

Joint ci ratio: 4.983754e-02	ci left: 2.303271e-01	ci right 2.421497e-01	k: 4724	n:20000
Cons ci ratio: 2.811288e-02	ci left: 4.859476e-01	ci right 4.998544e-01	k: 9858	n:20000
KS ci ratio: 7.298527e-02	ci left: 1.214305e-01	ci right 1.306785e-01	k: 2520	n:20000
MAGEB6   20000 perm   4 sec   (5217 perm/sec)   p_kst 1.260000e-01   p_cons 4.929000e-01   p_joint 2.362000e-01

Outputting figure to mutsig2_images.part000000000101/MAGEB6.4_1228_20000_0.126_0.4929_0.2362.png
                gene_name: MAGEB6
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 38 percent done.
MAGEL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.239779e-02	ci left: 2.184255e-01	ci right 2.349340e-01	k: 2266	n:10000
Cons ci ratio: 1.568038e-02	ci left: 8.551867e-01	ci right 8.688017e-01	k: 8621	n:10000
KS ci ratio: 1.579714e-01	ci left: 5.340171e-02	ci right 6.265786e-02	k: 579	n:10000
MAGEL2   10000 perm   2 sec   (5137 perm/sec)   p_kst 5.790000e-02   p_cons 8.621000e-01   p_joint 2.266000e-01

Joint ci ratio: 6.364054e-02	ci left: 1.543517e-01	ci right 1.645475e-01	k: 3188	n:20000
Cons ci ratio: 1.087852e-02	ci left: 8.617588e-01	ci right 8.712344e-01	k: 17331	n:20000
KS ci ratio: 1.124792e-01	ci left: 5.402115e-02	ci right 6.050832e-02	k: 1144	n:20000
MAGEL2   20000 perm   4 sec   (4629 perm/sec)   p_kst 5.720000e-02   p_cons 8.665500e-01   p_joint 1.594000e-01

Joint ci ratio: 6.019052e-02	ci left: 1.201259e-01	ci right 1.276138e-01	k: 3715	n:30000
Cons ci ratio: 8.351457e-03	ci left: 8.764381e-01	ci right 8.838214e-01	k: 26405	n:30000
KS ci ratio: 9.233957e-02	ci left: 5.404414e-02	ci right 5.930879e-02	k: 1699	n:30000
MAGEL2   30000 perm   7 sec   (4444 perm/sec)   p_kst 5.663333e-02   p_cons 8.801667e-01   p_joint 1.238333e-01

Outputting figure to mutsig2_images.part000000000101/MAGEL2.4_3754_30000_0.056633_0.88017_0.12383.png
                gene_name: MAGEL2
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.057 
        ci_ks_bounds_left: 0.054 
       ci_ks_bounds_right: 0.059 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 40 percent done.
MAN1A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.296523e-02	ci left: 5.759714e-01	ci right 5.953787e-01	k: 5857	n:10000
Cons ci ratio: 1.924495e-02	ci left: 7.979081e-01	ci right 8.135134e-01	k: 8058	n:10000
KS ci ratio: 4.237972e-02	ci left: 4.511926e-01	ci right 4.708301e-01	k: 4610	n:10000
MAN1A1   10000 perm   2 sec   (5494 perm/sec)   p_kst 4.610000e-01   p_cons 8.058000e-01   p_joint 5.857000e-01

Outputting figure to mutsig2_images.part000000000101/MAN1A1.4_2010_10000_0.461_0.8058_0.5857.png
                gene_name: MAN1A1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 42 percent done.
MAN2A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.477842e-02	ci left: 8.689718e-01	ci right 8.820086e-01	k: 8756	n:10000
KS ci ratio: 2.647003e-02	ci left: 6.776064e-01	ci right 6.958847e-01	k: 6868	n:10000
MAN2A1   10000 perm   2 sec   (5002 perm/sec)   p_kst 6.868000e-01   p_cons 8.756000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000101/MAN2A1.4_3523_10000_0.6868_0.8756_1.png
                gene_name: MAN2A1
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 44 percent done.
MAN2A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.327604e-02	ci left: 2.142811e-01	ci right 2.306809e-01	k: 2224	n:10000
Cons ci ratio: 1.398780e-02	ci left: 8.807342e-01	ci right 8.932393e-01	k: 8871	n:10000
KS ci ratio: 1.193945e-01	ci left: 9.146191e-02	ci right 1.031739e-01	k: 972	n:10000
MAN2A2   10000 perm   2 sec   (4921 perm/sec)   p_kst 9.720000e-02   p_cons 8.871000e-01   p_joint 2.224000e-01

Joint ci ratio: 6.753912e-02	ci left: 1.392598e-01	ci right 1.490439e-01	k: 2882	n:20000
Cons ci ratio: 9.852646e-03	ci left: 8.833953e-01	ci right 8.921916e-01	k: 17757	n:20000
KS ci ratio: 8.428246e-02	ci left: 9.347166e-02	ci right 1.017457e-01	k: 1951	n:20000
MAN2A2   20000 perm   4 sec   (4449 perm/sec)   p_kst 9.755000e-02   p_cons 8.878500e-01   p_joint 1.441000e-01

Outputting figure to mutsig2_images.part000000000101/MAN2A2.4_3541_20000_0.09755_0.88785_0.1441.png
                gene_name: MAN2A2
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.098 
        ci_ks_bounds_left: 0.093 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 45 percent done.
MANSC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.898055e-02	ci left: 2.356076e-01	ci right 2.525417e-01	k: 2440	n:10000
Cons ci ratio: 1.098776e-01	ci left: 1.066631e-01	ci right 1.191634e-01	k: 1128	n:10000
KS ci ratio: 3.281605e-02	ci left: 5.781784e-01	ci right 5.975704e-01	k: 5879	n:10000
MANSC1   10000 perm   2 sec   (5844 perm/sec)   p_kst 5.879000e-01   p_cons 1.128000e-01   p_joint 2.440000e-01

Joint ci ratio: 6.101931e-02	ci left: 1.658050e-01	ci right 1.762908e-01	k: 3420	n:20000
Cons ci ratio: 8.028516e-02	ci left: 1.022081e-01	ci right 1.108067e-01	k: 2129	n:20000
KS ci ratio: 2.341710e-02	ci left: 5.766311e-01	ci right 5.903447e-01	k: 11670	n:20000
MANSC1   20000 perm   4 sec   (5214 perm/sec)   p_kst 5.835000e-01   p_cons 1.064500e-01   p_joint 1.710000e-01

Outputting figure to mutsig2_images.part000000000101/MANSC1.4_1308_20000_0.5835_0.10645_0.171.png
                gene_name: MANSC1
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 47 percent done.
MAP1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.768235e-02	ci left: 3.935649e-01	ci right 4.128915e-01	k: 4032	n:10000
Cons ci ratio: 2.212491e-02	ci left: 7.498858e-01	ci right 7.667635e-01	k: 7584	n:10000
KS ci ratio: 6.987054e-02	ci left: 2.309646e-01	ci right 2.477875e-01	k: 2393	n:10000
MAP1B   10000 perm   2 sec   (4217 perm/sec)   p_kst 2.393000e-01   p_cons 7.584000e-01   p_joint 4.032000e-01

Outputting figure to mutsig2_images.part000000000101/MAP1B.4_7435_10000_0.2393_0.7584_0.4032.png
                gene_name: MAP1B
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 49 percent done.
MAP3K12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.406212e-01	ci left: 6.700893e-02	ci right 7.724202e-02	k: 720	n:10000
Cons ci ratio: 1.105409e-01	ci left: 1.054923e-01	ci right 1.179349e-01	k: 1116	n:10000
KS ci ratio: 1.368725e-01	ci left: 7.058968e-02	ci right 8.105902e-02	k: 757	n:10000
MAP3K12   10000 perm   2 sec   (5521 perm/sec)   p_kst 7.570000e-02   p_cons 1.116000e-01   p_joint 7.200000e-02

Joint ci ratio: 1.385177e-01	ci left: 3.582747e-02	ci right 4.120776e-02	k: 769	n:20000
Cons ci ratio: 7.783271e-02	ci left: 1.081524e-01	ci right 1.169606e-01	k: 2250	n:20000
KS ci ratio: 9.438160e-02	ci left: 7.564046e-02	ci right 8.318235e-02	k: 1587	n:20000
MAP3K12   20000 perm   4 sec   (4976 perm/sec)   p_kst 7.935000e-02   p_cons 1.125000e-01   p_joint 3.845000e-02

Joint ci ratio: 9.003241e-02	ci left: 5.675135e-02	ci right 6.213436e-02	k: 1782	n:30000
Cons ci ratio: 6.337618e-02	ci left: 1.095041e-01	ci right 1.167043e-01	k: 3392	n:30000
KS ci ratio: 7.635127e-02	ci left: 7.767465e-02	ci right 8.387349e-02	k: 2422	n:30000
MAP3K12   30000 perm   6 sec   (4755 perm/sec)   p_kst 8.073333e-02   p_cons 1.130667e-01   p_joint 5.940000e-02

Outputting figure to mutsig2_images.part000000000101/MAP3K12.4_2636_30000_0.080733_0.11307_0.0594.png
                gene_name: MAP3K12
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.081 
        ci_ks_bounds_left: 0.078 
       ci_ks_bounds_right: 0.084 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.059 
     ci_joint_bounds_left: 0.057 
    ci_joint_bounds_right: 0.062 

Current progress: 51 percent done.
MAGEA12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.204025e-02	ci left: 4.551856e-01	ci right 4.748348e-01	k: 4650	n:10000
Cons ci ratio: 2.383922e-02	ci left: 7.211824e-01	ci right 7.386835e-01	k: 7300	n:10000
KS ci ratio: 5.289665e-02	ci left: 3.450184e-01	ci right 3.638665e-01	k: 3544	n:10000
MAGEA12   10000 perm   2 sec   (6396 perm/sec)   p_kst 3.544000e-01   p_cons 7.300000e-01   p_joint 4.650000e-01

Outputting figure to mutsig2_images.part000000000101/MAGEA12.3_949_10000_0.3544_0.73_0.465.png
                gene_name: MAGEA12
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.47 

Current progress: 53 percent done.
MAGEA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.468960e-02	ci left: 1.393291e-01	ci right 1.532776e-01	k: 1462	n:10000
Cons ci ratio: 8.673692e-02	ci left: 1.621934e-01	ci right 1.769996e-01	k: 1695	n:10000
KS ci ratio: 6.724969e-02	ci left: 2.449966e-01	ci right 2.621471e-01	k: 2535	n:10000
MAGEA3   10000 perm   2 sec   (6164 perm/sec)   p_kst 2.535000e-01   p_cons 1.695000e-01   p_joint 1.462000e-01

Outputting figure to mutsig2_images.part000000000101/MAGEA3.3_949_10000_0.2535_0.1695_0.1462.png
                gene_name: MAGEA3
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 55 percent done.
MAGEB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.941013e-02	ci left: 6.303014e-01	ci right 6.492171e-01	k: 6398	n:10000
Cons ci ratio: 6.161973e-02	ci left: 2.791374e-01	ci right 2.969862e-01	k: 2880	n:10000
KS ci ratio: 4.497695e-03	ci left: 9.846908e-01	ci right 9.892189e-01	k: 9871	n:10000
MAGEB1   10000 perm   2 sec   (6296 perm/sec)   p_kst 9.871000e-01   p_cons 2.880000e-01   p_joint 6.398000e-01

Outputting figure to mutsig2_images.part000000000101/MAGEB1.3_1048_10000_0.9871_0.288_0.6398.png
                gene_name: MAGEB1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 56 percent done.
MAGEB16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.947409e-03	ci left: 9.566005e-01	ci right 9.643283e-01	k: 9606	n:10000
Cons ci ratio: 9.724413e-03	ci left: 9.373421e-01	ci right 9.465983e-01	k: 9421	n:10000
KS ci ratio: 3.367660e-02	ci left: 5.655412e-01	ci right 5.850149e-01	k: 5753	n:10000
MAGEB16   10000 perm   2 sec   (6415 perm/sec)   p_kst 5.753000e-01   p_cons 9.421000e-01   p_joint 9.606000e-01

Outputting figure to mutsig2_images.part000000000101/MAGEB16.3_979_10000_0.5753_0.9421_0.9606.png
                gene_name: MAGEB16
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.96 

Current progress: 58 percent done.
MAGED2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.926549e-02	ci left: 1.281636e-01	ci right 1.416499e-01	k: 1348	n:10000
Cons ci ratio: 1.126523e-01	ci left: 1.018840e-01	ci right 1.141454e-01	k: 1079	n:10000
KS ci ratio: 5.493380e-02	ci left: 3.280320e-01	ci right 3.466628e-01	k: 3373	n:10000
MAGED2   10000 perm   2 sec   (6042 perm/sec)   p_kst 3.373000e-01   p_cons 1.079000e-01   p_joint 1.348000e-01

Joint ci ratio: 6.127879e-02	ci left: 1.646198e-01	ci right 1.750764e-01	k: 3396	n:20000
Cons ci ratio: 8.333946e-02	ci left: 9.543404e-02	ci right 1.037828e-01	k: 1991	n:20000
KS ci ratio: 3.871410e-02	ci left: 3.322891e-01	ci right 3.454578e-01	k: 6777	n:20000
MAGED2   20000 perm   4 sec   (5345 perm/sec)   p_kst 3.388500e-01   p_cons 9.955000e-02   p_joint 1.698000e-01

Outputting figure to mutsig2_images.part000000000101/MAGED2.3_1865_20000_0.33885_0.09955_0.1698.png
                gene_name: MAGED2
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.100 
      ci_cons_bounds_left: 0.095 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.18 

Current progress: 60 percent done.
MAMDC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.588489e-02	ci left: 5.341766e-01	ci right 5.537978e-01	k: 5440	n:10000
KS ci ratio: 1.368595e-02	ci left: 8.851375e-01	ci right 8.974335e-01	k: 8914	n:10000
MAMDC4   10000 perm   2 sec   (5222 perm/sec)   p_kst 8.914000e-01   p_cons 5.440000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000101/MAMDC4.3_3522_10000_0.8914_0.544_1.png
                gene_name: MAMDC4
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
MAML1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.722590e-03	ci left: 9.485639e-01	ci right 9.569698e-01	k: 9529	n:10000
Cons ci ratio: 9.821929e-03	ci left: 9.362019e-01	ci right 9.455392e-01	k: 9410	n:10000
KS ci ratio: 1.873320e-02	ci left: 8.063342e-01	ci right 8.216825e-01	k: 8141	n:10000
MAML1   10000 perm   2 sec   (5345 perm/sec)   p_kst 8.141000e-01   p_cons 9.410000e-01   p_joint 9.529000e-01

Outputting figure to mutsig2_images.part000000000101/MAML1.3_3071_10000_0.8141_0.941_0.9529.png
                gene_name: MAML1
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 64 percent done.
MAN1C1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.326536e-02	ci left: 7.307786e-01	ci right 7.480817e-01	k: 7395	n:10000
Cons ci ratio: 1.903571e-02	ci left: 8.013591e-01	ci right 8.168604e-01	k: 8092	n:10000
KS ci ratio: 4.239677e-02	ci left: 4.509930e-01	ci right 4.706299e-01	k: 4608	n:10000
MAN1C1   10000 perm   2 sec   (5932 perm/sec)   p_kst 4.608000e-01   p_cons 8.092000e-01   p_joint 7.395000e-01

Outputting figure to mutsig2_images.part000000000101/MAN1C1.3_1941_10000_0.4608_0.8092_0.7395.png
                gene_name: MAN1C1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 65 percent done.
MAN2B2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.127940e-02	ci left: 9.182193e-01	ci right 9.287325e-01	k: 9236	n:10000
Cons ci ratio: 3.765680e-02	ci left: 5.101534e-01	ci right 5.298350e-01	k: 5200	n:10000
KS ci ratio: 3.398073e-02	ci left: 5.611297e-01	ci right 5.806290e-01	k: 5709	n:10000
MAN2B2   10000 perm   2 sec   (5215 perm/sec)   p_kst 5.709000e-01   p_cons 5.200000e-01   p_joint 9.236000e-01

Outputting figure to mutsig2_images.part000000000101/MAN2B2.3_3106_10000_0.5709_0.52_0.9236.png
                gene_name: MAN2B2
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 67 percent done.
MAP1S
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.434269e-02	ci left: 5.559172e-01	ci right 5.754445e-01	k: 5657	n:10000
Cons ci ratio: 5.710380e-02	ci left: 3.110592e-01	ci right 3.294457e-01	k: 3202	n:10000
KS ci ratio: 4.456744e-02	ci left: 4.263503e-01	ci right 4.458869e-01	k: 4361	n:10000
MAP1S   10000 perm   2 sec   (5469 perm/sec)   p_kst 4.361000e-01   p_cons 3.202000e-01   p_joint 5.657000e-01

Outputting figure to mutsig2_images.part000000000101/MAP1S.3_3208_10000_0.4361_0.3202_0.5657.png
                gene_name: MAP1S
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 69 percent done.
MAP2K3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.618433e-02	ci left: 8.473340e-01	ci right 8.612589e-01	k: 8544	n:10000
KS ci ratio: 1.364354e-02	ci left: 8.857521e-01	ci right 8.980186e-01	k: 8920	n:10000
MAP2K3   10000 perm   2 sec   (6288 perm/sec)   p_kst 8.920000e-01   p_cons 8.544000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000101/MAP2K3.3_1092_10000_0.892_0.8544_1.png
                gene_name: MAP2K3
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
MAP3K1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.873093e-02	ci left: 6.410619e-01	ci right 6.598504e-01	k: 6505	n:10000
KS ci ratio: 2.307825e-02	ci left: 7.339111e-01	ci right 7.511474e-01	k: 7426	n:10000
MAP3K1   10000 perm   2 sec   (5011 perm/sec)   p_kst 7.426000e-01   p_cons 6.505000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000101/MAP3K1.3_4619_10000_0.7426_0.6505_1.png
                gene_name: MAP3K1
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
MAGEA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.118333e-02	ci left: 9.194566e-01	ci right 9.298944e-01	k: 9248	n:10000
KS ci ratio: 2.996751e-02	ci left: 6.215560e-01	ci right 6.405676e-01	k: 6311	n:10000
MAGEA1   10000 perm   1 sec   (6814 perm/sec)   p_kst 6.311000e-01   p_cons 9.248000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000101/MAGEA1.2_934_10000_0.6311_0.9248_1.png
                gene_name: MAGEA1
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
MAGEA10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.601149e-02	ci left: 2.520172e-01	ci right 2.693224e-01	k: 2606	n:10000
Cons ci ratio: 7.254263e-02	ci left: 2.177347e-01	ci right 2.342252e-01	k: 2259	n:10000
KS ci ratio: 2.575267e-02	ci left: 6.893987e-01	ci right 7.074856e-01	k: 6985	n:10000
MAGEA10   10000 perm   1 sec   (6907 perm/sec)   p_kst 6.985000e-01   p_cons 2.259000e-01   p_joint 2.606000e-01

Outputting figure to mutsig2_images.part000000000101/MAGEA10.2_1114_10000_0.6985_0.2259_0.2606.png
                gene_name: MAGEA10
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 76 percent done.
MAGED1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.108667e-02	ci left: 9.206943e-01	ci right 9.310560e-01	k: 9260	n:10000
Cons ci ratio: 5.997850e-02	ci left: 2.902347e-01	ci right 3.082824e-01	k: 2992	n:10000
KS ci ratio: 4.529973e-02	ci left: 4.183742e-01	ci right 4.378677e-01	k: 4281	n:10000
MAGED1   10000 perm   2 sec   (5898 perm/sec)   p_kst 4.281000e-01   p_cons 2.992000e-01   p_joint 9.260000e-01

Outputting figure to mutsig2_images.part000000000101/MAGED1.2_2553_10000_0.4281_0.2992_0.926.png
                gene_name: MAGED1
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 78 percent done.
MAGEH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.844739e-01	ci left: 3.920326e-02	ci right 4.726556e-02	k: 431	n:10000
Cons ci ratio: 9.103802e-03	ci left: 9.444016e-01	ci right 9.531346e-01	k: 9489	n:10000
KS ci ratio: 3.842359e-01	ci left: 8.324320e-03	ci right 1.236857e-02	k: 102	n:10000
MAGEH1   10000 perm   1 sec   (6782 perm/sec)   p_kst 1.020000e-02   p_cons 9.489000e-01   p_joint 4.310000e-02

Joint ci ratio: 7.011743e-02	ci left: 1.303908e-01	ci right 1.399155e-01	k: 2702	n:20000
Cons ci ratio: 6.414956e-03	ci left: 9.460658e-01	ci right 9.522028e-01	k: 18984	n:20000
KS ci ratio: 2.697250e-01	ci left: 9.040547e-03	ci right 1.190446e-02	k: 208	n:20000
MAGEH1   20000 perm   3 sec   (5956 perm/sec)   p_kst 1.040000e-02   p_cons 9.492000e-01   p_joint 1.351000e-01

Joint ci ratio: 6.077057e-02	ci left: 1.180863e-01	ci right 1.255205e-01	k: 3653	n:30000
Cons ci ratio: 5.262386e-03	ci left: 9.461773e-01	ci right 9.512021e-01	k: 28462	n:30000
KS ci ratio: 2.278841e-01	ci left: 8.653395e-03	ci right 1.090973e-02	k: 292	n:30000
MAGEH1   30000 perm   5 sec   (5646 perm/sec)   p_kst 9.733333e-03   p_cons 9.487333e-01   p_joint 1.217667e-01

Joint ci ratio: 4.190444e-02	ci left: 1.757252e-01	ci right 1.832714e-01	k: 7179	n:40000
Cons ci ratio: 4.599443e-03	ci left: 9.456005e-01	ci right 9.499842e-01	k: 37913	n:40000
KS ci ratio: 1.916555e-01	ci left: 9.357548e-03	ci right 1.136449e-02	k: 413	n:40000
MAGEH1   40000 perm   7 sec   (5444 perm/sec)   p_kst 1.032500e-02   p_cons 9.478250e-01   p_joint 1.794750e-01

Joint ci ratio: 3.148618e-02	ci left: 2.329001e-01	ci right 2.403705e-01	k: 11831	n:50000
Cons ci ratio: 4.090585e-03	ci left: 9.464044e-01	ci right 9.503033e-01	k: 47419	n:50000
KS ci ratio: 1.718423e-01	ci left: 9.414392e-03	ci right 1.120315e-02	k: 514	n:50000
MAGEH1   50000 perm   9 sec   (5274 perm/sec)   p_kst 1.028000e-02   p_cons 9.483800e-01   p_joint 2.366200e-01

Joint ci ratio: 2.879518e-02	ci left: 2.325737e-01	ci right 2.393852e-01	k: 14158	n:60000
Cons ci ratio: 3.730139e-03	ci left: 9.466845e-01	ci right 9.502387e-01	k: 56909	n:60000
KS ci ratio: 1.579060e-01	ci left: 9.363400e-03	ci right 1.098451e-02	k: 609	n:60000
MAGEH1   60000 perm   12 sec   (5145 perm/sec)   p_kst 1.015000e-02   p_cons 9.484833e-01   p_joint 2.359667e-01

Joint ci ratio: 2.672252e-02	ci left: 2.319767e-01	ci right 2.382739e-01	k: 16458	n:70000
Cons ci ratio: 3.462869e-03	ci left: 9.465469e-01	ci right 9.498444e-01	k: 66375	n:70000
KS ci ratio: 1.467843e-01	ci left: 9.344964e-03	ci right 1.083892e-02	k: 705	n:70000
MAGEH1   70000 perm   14 sec   (5026 perm/sec)   p_kst 1.007143e-02   p_cons 9.482143e-01   p_joint 2.351143e-01

Joint ci ratio: 2.503081e-02	ci left: 2.316919e-01	ci right 2.375773e-01	k: 18770	n:80000
Cons ci ratio: 3.235108e-03	ci left: 9.467811e-01	ci right 9.498613e-01	k: 75867	n:80000
KS ci ratio: 1.378104e-01	ci left: 9.322086e-03	ci right 1.071379e-02	k: 800	n:80000
MAGEH1   80000 perm   16 sec   (4917 perm/sec)   p_kst 1.000000e-02   p_cons 9.483375e-01   p_joint 2.346250e-01

Joint ci ratio: 2.360101e-02	ci left: 2.318346e-01	ci right 2.373825e-01	k: 21114	n:90000
Cons ci ratio: 3.045343e-03	ci left: 9.470247e-01	ci right 9.499241e-01	k: 85364	n:90000
KS ci ratio: 1.293592e-01	ci left: 9.446261e-03	ci right 1.076338e-02	k: 908	n:90000
MAGEH1   90000 perm   19 sec   (4818 perm/sec)   p_kst 1.008889e-02   p_cons 9.484889e-01   p_joint 2.346000e-01

Joint ci ratio: 2.239557e-02	ci left: 2.318867e-01	ci right 2.371487e-01	k: 23451	n:100000
Cons ci ratio: 2.876275e-03	ci left: 9.475374e-01	ci right 9.502765e-01	k: 94892	n:100000
KS ci ratio: 1.230290e-01	ci left: 9.431335e-03	ci right 1.067733e-02	k: 1004	n:100000
MAGEH1   100000 perm   21 sec   (4722 perm/sec)   p_kst 1.004000e-02   p_cons 9.489200e-01   p_joint 2.345100e-01

Joint ci ratio: 2.135183e-02	ci left: 2.320349e-01	ci right 2.370518e-01	k: 25799	n:110000
Cons ci ratio: 2.748618e-03	ci left: 9.473799e-01	ci right 9.499964e-01	k: 104357	n:110000
KS ci ratio: 1.174378e-01	ci left: 9.438065e-03	ci right 1.062435e-02	k: 1102	n:110000
MAGEH1   110000 perm   24 sec   (4629 perm/sec)   p_kst 1.001818e-02   p_cons 9.487000e-01   p_joint 2.345364e-01

Joint ci ratio: 2.044921e-02	ci left: 2.320304e-01	ci right 2.368325e-01	k: 28131	n:120000
Cons ci ratio: 2.629107e-03	ci left: 9.475295e-01	ci right 9.500321e-01	k: 113855	n:120000
KS ci ratio: 1.128784e-01	ci left: 9.388038e-03	ci right 1.051917e-02	k: 1193	n:120000
MAGEH1   120000 perm   26 sec   (4546 perm/sec)   p_kst 9.941667e-03   p_cons 9.487917e-01   p_joint 2.344250e-01

Joint ci ratio: 1.965933e-02	ci left: 2.319000e-01	ci right 2.365119e-01	k: 30446	n:130000
Cons ci ratio: 2.528534e-03	ci left: 9.474791e-01	ci right 9.498854e-01	k: 123330	n:130000
KS ci ratio: 1.083866e-01	ci left: 9.421318e-03	ci right 1.050840e-02	k: 1294	n:130000
MAGEH1   130000 perm   29 sec   (4465 perm/sec)   p_kst 9.953846e-03   p_cons 9.486923e-01   p_joint 2.342000e-01

Joint ci ratio: 1.896841e-02	ci left: 2.315279e-01	ci right 2.359688e-01	k: 32724	n:140000
Cons ci ratio: 2.437068e-03	ci left: 9.475026e-01	ci right 9.498216e-01	k: 132814	n:140000
KS ci ratio: 1.042033e-01	ci left: 9.485400e-03	ci right 1.053504e-02	k: 1400	n:140000
MAGEH1   140000 perm   32 sec   (4382 perm/sec)   p_kst 1.000000e-02   p_cons 9.486714e-01   p_joint 2.337429e-01

Joint ci ratio: 1.833119e-02	ci left: 2.314872e-01	ci right 2.357765e-01	k: 35044	n:150000
Cons ci ratio: 2.355666e-03	ci left: 9.474907e-01	ci right 9.497319e-01	k: 142293	n:150000
KS ci ratio: 1.006724e-01	ci left: 9.502632e-03	ci right 1.051644e-02	k: 1500	n:150000
MAGEH1   150000 perm   35 sec   (4309 perm/sec)   p_kst 1.000000e-02   p_cons 9.486200e-01   p_joint 2.336267e-01

Joint ci ratio: 1.774766e-02	ci left: 2.315845e-01	ci right 2.357376e-01	k: 37385	n:160000
Cons ci ratio: 2.281763e-03	ci left: 9.474878e-01	ci right 9.496584e-01	k: 151773	n:160000
KS ci ratio: 9.760094e-02	ci left: 9.493839e-03	ci right 1.047404e-02	k: 1596	n:160000
MAGEH1   160000 perm   38 sec   (4234 perm/sec)   p_kst 9.975000e-03   p_cons 9.485813e-01   p_joint 2.336563e-01

Outputting figure to mutsig2_images.part000000000101/MAGEH1.2_664_160000_0.009975_0.94858_0.23366.png
                gene_name: MAGEH1
               theta_stop: 0.098 
                    nperm: 160000 
                     p_ks: 0.0100 
        ci_ks_bounds_left: 0.0095 
       ci_ks_bounds_right: 0.010 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 80 percent done.
MAGI3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.157234e-02	ci left: 1.798919e-01	ci right 1.952906e-01	k: 1875	n:10000
Cons ci ratio: 5.372743e-02	ci left: 3.379640e-01	ci right 3.567250e-01	k: 3473	n:10000
KS ci ratio: 1.171404e-01	ci left: 9.477139e-02	ci right 1.066624e-01	k: 1006	n:10000
MAGI3   10000 perm   2 sec   (4627 perm/sec)   p_kst 1.006000e-01   p_cons 3.473000e-01   p_joint 1.875000e-01

Joint ci ratio: 6.298386e-02	ci left: 1.571155e-01	ci right 1.673829e-01	k: 3244	n:20000
Cons ci ratio: 3.775754e-02	ci left: 3.435362e-01	ci right 3.568074e-01	k: 7003	n:20000
KS ci ratio: 8.340923e-02	ci left: 9.528684e-02	ci right 1.036300e-01	k: 1988	n:20000
MAGI3   20000 perm   5 sec   (4415 perm/sec)   p_kst 9.940000e-02   p_cons 3.501500e-01   p_joint 1.622000e-01

Outputting figure to mutsig2_images.part000000000101/MAGI3.2_4584_20000_0.0994_0.35015_0.1622.png
                gene_name: MAGI3
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.099 
        ci_ks_bounds_left: 0.095 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 82 percent done.
MAL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.196689e-02	ci left: 2.204982e-01	ci right 2.370601e-01	k: 2287	n:10000
Cons ci ratio: 1.994172e-01	ci left: 3.348089e-02	ci right 4.099178e-02	k: 371	n:10000
KS ci ratio: 3.758145e-02	ci left: 5.111539e-01	ci right 5.308339e-01	k: 5210	n:10000
MAL2   10000 perm   1 sec   (6849 perm/sec)   p_kst 5.210000e-01   p_cons 3.710000e-02   p_joint 2.287000e-01

Joint ci ratio: 2.251558e-02	ci left: 5.956280e-01	ci right 6.092422e-01	k: 12049	n:20000
Cons ci ratio: 1.373166e-01	ci left: 3.645585e-02	ci right 4.187918e-02	k: 782	n:20000
KS ci ratio: 2.618463e-02	ci left: 5.214530e-01	ci right 5.353388e-01	k: 10568	n:20000
MAL2   20000 perm   3 sec   (6002 perm/sec)   p_kst 5.284000e-01   p_cons 3.910000e-02   p_joint 6.024500e-01

Joint ci ratio: 2.952378e-02	ci left: 3.646325e-01	ci right 3.755927e-01	k: 11103	n:30000
Cons ci ratio: 1.138195e-01	ci left: 3.586462e-02	ci right 4.022542e-02	k: 1140	n:30000
KS ci ratio: 2.145319e-02	ci left: 5.210311e-01	ci right 5.323637e-01	k: 15801	n:30000
MAL2   30000 perm   5 sec   (5689 perm/sec)   p_kst 5.267000e-01   p_cons 3.800000e-02   p_joint 3.701000e-01

Joint ci ratio: 2.571196e-02	ci left: 3.627725e-01	ci right 3.722467e-01	k: 14700	n:40000
Cons ci ratio: 9.861587e-02	ci left: 3.612301e-02	ci right 3.989444e-02	k: 1519	n:40000
KS ci ratio: 1.862772e-02	ci left: 5.204922e-01	ci right 5.303041e-01	k: 21016	n:40000
MAL2   40000 perm   7 sec   (5497 perm/sec)   p_kst 5.254000e-01   p_cons 3.797500e-02   p_joint 3.675000e-01

Outputting figure to mutsig2_images.part000000000101/MAL2.2_548_40000_0.5254_0.037975_0.3675.png
                gene_name: MAL2
               theta_stop: 0.099 
                    nperm: 40000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.038 
      ci_cons_bounds_left: 0.036 
     ci_cons_bounds_right: 0.040 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 84 percent done.
MAMDC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.013009e-02	ci left: 4.783575e-01	ci right 4.980493e-01	k: 4882	n:10000
Cons ci ratio: 6.518270e-02	ci left: 2.568641e-01	ci right 2.742727e-01	k: 2655	n:10000
KS ci ratio: 8.770386e-02	ci left: 1.591483e-01	ci right 1.738466e-01	k: 1664	n:10000
MAMDC2   10000 perm   2 sec   (6261 perm/sec)   p_kst 1.664000e-01   p_cons 2.655000e-01   p_joint 4.882000e-01

Outputting figure to mutsig2_images.part000000000101/MAMDC2.2_2117_10000_0.1664_0.2655_0.4882.png
                gene_name: MAMDC2
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 85 percent done.
MAMLD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.206707e-02	ci left: 9.078193e-01	ci right 9.189385e-01	k: 9135	n:10000
Cons ci ratio: 1.905420e-02	ci left: 8.010545e-01	ci right 8.165651e-01	k: 8089	n:10000
KS ci ratio: 3.100581e-02	ci left: 6.054810e-01	ci right 6.246520e-01	k: 6151	n:10000
MAMLD1   10000 perm   2 sec   (5561 perm/sec)   p_kst 6.151000e-01   p_cons 8.089000e-01   p_joint 9.135000e-01

Outputting figure to mutsig2_images.part000000000101/MAMLD1.2_3467_10000_0.6151_0.8089_0.9135.png
                gene_name: MAMLD1
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 87 percent done.
MAN2B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.823983e-02	ci left: 6.489092e-01	ci right 6.675985e-01	k: 6583	n:10000
Cons ci ratio: 4.156183e-02	ci left: 4.608768e-01	ci right 4.805403e-01	k: 4707	n:10000
KS ci ratio: 1.706549e-02	ci left: 8.333784e-01	ci right 8.478226e-01	k: 8407	n:10000
MAN2B1   10000 perm   2 sec   (5620 perm/sec)   p_kst 8.407000e-01   p_cons 4.707000e-01   p_joint 6.583000e-01

Outputting figure to mutsig2_images.part000000000101/MAN2B1.2_3132_10000_0.8407_0.4707_0.6583.png
                gene_name: MAN2B1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 89 percent done.
MANBA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.351896e-02	ci left: 7.265354e-01	ci right 7.439273e-01	k: 7353	n:10000
KS ci ratio: 9.635105e-03	ci left: 9.383791e-01	ci right 9.475607e-01	k: 9431	n:10000
MANBA   10000 perm   2 sec   (5767 perm/sec)   p_kst 9.431000e-01   p_cons 7.353000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000101/MANBA.2_2708_10000_0.9431_0.7353_1.png
                gene_name: MANBA
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
MANBAL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.171345e-03	ci left: 9.640458e-01	ci right 9.710784e-01	k: 9677	n:10000
Cons ci ratio: 3.863384e-02	ci left: 4.973503e-01	ci right 5.170455e-01	k: 5072	n:10000
KS ci ratio: 2.189552e-02	ci left: 7.537301e-01	ci right 7.705170e-01	k: 7622	n:10000
MANBAL   10000 perm   1 sec   (7117 perm/sec)   p_kst 7.622000e-01   p_cons 5.072000e-01   p_joint 9.677000e-01

Outputting figure to mutsig2_images.part000000000101/MANBAL.2_266_10000_0.7622_0.5072_0.9677.png
                gene_name: MANBAL
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 93 percent done.
MAP1LC3C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
KS ci ratio: 1.991862e-02	ci left: 7.867494e-01	ci right 8.026785e-01	k: 7948	n:10000
MAP1LC3C   10000 perm   1 sec   (7044 perm/sec)   p_kst 7.948000e-01   p_cons 1   p_joint 1

Outputting figure to mutsig2_images.part000000000101/MAP1LC3C.2_460_10000_0.7948_1_1.png
                gene_name: MAP1LC3C
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 1 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
MAP2K1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.245670e-01	ci left: 8.446093e-02	ci right 9.577916e-02	k: 900	n:10000
Cons ci ratio: 5.948178e-02	ci left: 2.937039e-01	ci right 3.118111e-01	k: 3027	n:10000
KS ci ratio: 1.528606e-01	ci left: 5.696592e-02	ci right 6.649137e-02	k: 616	n:10000
MAP2K1   10000 perm   2 sec   (6452 perm/sec)   p_kst 6.160000e-02   p_cons 3.027000e-01   p_joint 9.000000e-02

Joint ci ratio: 7.392778e-02	ci left: 1.186750e-01	ci right 1.278348e-01	k: 2464	n:20000
Cons ci ratio: 4.210498e-02	ci left: 2.959393e-01	ci right 3.087182e-01	k: 6046	n:20000
KS ci ratio: 1.094685e-01	ci left: 5.694265e-02	ci right 6.358591e-02	k: 1204	n:20000
MAP2K1   20000 perm   4 sec   (5673 perm/sec)   p_kst 6.020000e-02   p_cons 3.023000e-01   p_joint 1.232000e-01

Joint ci ratio: 5.195286e-02	ci left: 1.553403e-01	ci right 1.636591e-01	k: 4784	n:30000
Cons ci ratio: 3.414507e-02	ci left: 2.999915e-01	ci right 3.104462e-01	k: 9156	n:30000
KS ci ratio: 8.818052e-02	ci left: 5.906845e-02	ci right 6.455012e-02	k: 1853	n:30000
MAP2K1   30000 perm   6 sec   (5390 perm/sec)   p_kst 6.176667e-02   p_cons 3.052000e-01   p_joint 1.594667e-01

Outputting figure to mutsig2_images.part000000000101/MAP2K1.2_1226_30000_0.061767_0.3052_0.15947.png
                gene_name: MAP2K1
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.062 
        ci_ks_bounds_left: 0.059 
       ci_ks_bounds_right: 0.065 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.16 

Current progress: 96 percent done.
MAP2K6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.445442e-03	ci left: 9.405580e-01	ci right 9.495805e-01	k: 9452	n:10000
Cons ci ratio: 1.809928e-02	ci left: 8.166970e-01	ci right 8.317137e-01	k: 8243	n:10000
KS ci ratio: 2.459607e-02	ci left: 7.085635e-01	ci right 7.263097e-01	k: 7175	n:10000
MAP2K6   10000 perm   1 sec   (6833 perm/sec)   p_kst 7.175000e-01   p_cons 8.243000e-01   p_joint 9.452000e-01

Outputting figure to mutsig2_images.part000000000101/MAP2K6.2_1053_10000_0.7175_0.8243_0.9452.png
                gene_name: MAP2K6
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 98 percent done.
MAP3K11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.360957e-02	ci left: 7.250203e-01	ci right 7.424434e-01	k: 7338	n:10000
Cons ci ratio: 6.935644e-02	ci left: 2.336317e-01	ci right 2.505188e-01	k: 2420	n:10000
KS ci ratio: 4.152016e-02	ci left: 4.613760e-01	ci right 4.810407e-01	k: 4712	n:10000
MAP3K11   10000 perm   2 sec   (5863 perm/sec)   p_kst 4.712000e-01   p_cons 2.420000e-01   p_joint 7.338000e-01

Outputting figure to mutsig2_images.part000000000101/MAP3K11.2_2584_10000_0.4712_0.242_0.7338.png
                gene_name: MAP3K11
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.74 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000101
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 101 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1730>
Subject: Job 8004257: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1730>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000102> was used as the working directory.
Started at Sun Nov 11 15:08:12 2012
Results reported at Sun Nov 11 18:05:50 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000102.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000102.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 102  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000102.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  10236.39 sec.
    Max Memory :      4754 MB
    Max Swap   :      7203 MB

    Max Processes  :         7
    Max Threads    :        71

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
102
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 102
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 102: processing genes 9138 - 9228
Calculating significance of each gene.
Using projection method.
9138	MAP3K13	1
9139	MAP3K14	9.265918e-01
9140	MAP3K15	1
9141	MAP3K2	1
9142	MAP3K3	9.200365e-01
9143	MAP3K4	1
9144	MAP3K5	9.937911e-01
9145	MAP3K6	9.953059e-01
9146	MAP3K7	6.856439e-01
9147	MAP3K8	1
9148	MAP3K9	7.521794e-01
9149	MAP4	9.162658e-01
9150	MAP4K1	1
9151	MAP4K2	9.434747e-01
9152	MAP4K3	1.045225e-01
9153	MAP4K4	9.422171e-01
9154	MAP4K5	8.394797e-01
9155	MAP6	1
9156	MAP7	4.200853e-01
9157	MAP7D1	5.932324e-01
9158	MAP7D2	4.987899e-01
9159	MAP7D3	1.967939e-01
9160	MAP9	7.058900e-01
9161	MAPK1	5.748328e-01
9162	MAPK10	6.620213e-01
9163	MAPK11	2.079040e-01
9164	MAPK12	1
9165	MAPK13	3.885598e-01
9166	MAPK14	7.923130e-01
9167	MAPK15	8.027562e-01
9168	MAPK1IP1L	1
9169	MAPK3	6.330189e-01
9170	MAPK4	5.408378e-01
9171	MAPK6	3.154471e-01
9172	MAPK7	8.983561e-01
9173	MAPK8	5.012321e-01
9174	MAPK8IP1	5.749934e-01
9175	MAPK8IP2	1
9176	MAPK8IP3	8.598694e-01
9177	MAPK9	8.079926e-01
9178	MAPKAP1	2.109925e-01
9179	MAPKAPK2	3.178602e-01
9180	MAPKAPK3	5.686540e-01
9181	MAPKAPK5	4.936974e-01
9182	MAPKBP1	9.936000e-01
9183	MAPKSP1	1
9184	MAPRE1	1.724033e-01
9185	MAPRE2	1
9186	MAPRE3	1
9187	MAPT	4.255871e-01
9188	MARCH1	6.834484e-01
9189	MARCH10	9.565431e-01
9190	MARCH11	5.423748e-02
9191	MARCH2	1
9192	MARCH3	1
9193	MARCH4	7.149012e-01
9194	MARCH5	1
9195	MARCH6	8.223189e-01
9196	MARCH7	9.293219e-01
9197	MARCH8	3.758809e-01
9198	MARCH9	1
9199	MARCKS	1.230399e-01
9200	MARCKSL1	5.947062e-01
9201	MARCO	8.754788e-01
9202	MARK1	1.041850e-01
9203	MARK2	7.001536e-01
9204	MARK3	8.909352e-01
9205	MARK4	5.327972e-01
9206	MARS	1
9207	MARS2	1
9208	MARVELD2	8.771797e-01
9209	MARVELD3	5.217228e-01
9210	MAS1	1.538266e-01
9211	MAS1L	6.727820e-01
9212	MASP1	8.917488e-01
9213	MASP2	8.682882e-01
9214	MAST1	9.961551e-01
9215	MAST2	8.801805e-01
9216	MAST3	1
9217	MAST4	9.999322e-01
9218	MASTL	5.456062e-01
9219	MAT1A	8.439747e-01
9220	MAT2A	8.462430e-01
9221	MAT2B	1
9222	MATK	2.862179e-01
9223	MATN1	8.427959e-01
9224	MATN2	3.787119e-01
9225	MATN3	2.721240e-01
9226	MATN4	2.923081e-01
9227	MATR3	3.021838e-01
9228	MAVS	8.027476e-01
Done

Running MutSig 2:
Scatter job 102: processing genes 9138 - 9228
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
MASP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.453085e-02	ci left: 3.313090e-01	ci right 3.499839e-01	k: 3406	n:10000
Cons ci ratio: 2.013815e-02	ci left: 7.830994e-01	ci right 7.991306e-01	k: 7912	n:10000
KS ci ratio: 8.276929e-02	ci left: 1.755630e-01	ci right 1.908220e-01	k: 1831	n:10000
MASP1   10000 perm   2 sec   (4953 perm/sec)   p_kst 1.831000e-01   p_cons 7.912000e-01   p_joint 3.406000e-01

Outputting figure to mutsig2_images.part000000000102/MASP1.10_3109_10000_0.1831_0.7912_0.3406.png
                gene_name: MASP1
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 2 percent done.
MARCH6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.439761e-02	ci left: 3.324015e-01	ci right 3.510908e-01	k: 3417	n:10000
Cons ci ratio: 3.657741e-02	ci left: 5.246647e-01	ci right 5.443152e-01	k: 5345	n:10000
KS ci ratio: 8.403543e-02	ci left: 1.711374e-01	ci right 1.862502e-01	k: 1786	n:10000
MARCH6   10000 perm   2 sec   (4984 perm/sec)   p_kst 1.786000e-01   p_cons 5.345000e-01   p_joint 3.417000e-01

Outputting figure to mutsig2_images.part000000000102/MARCH6.8_2837_10000_0.1786_0.5345_0.3417.png
                gene_name: MARCH6
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 4 percent done.
MAP4K3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.972278e-02	ci left: 4.834542e-01	ci right 5.031497e-01	k: 4933	n:10000
Cons ci ratio: 2.047888e-02	ci left: 7.774236e-01	ci right 7.936097e-01	k: 7856	n:10000
KS ci ratio: 6.481713e-02	ci left: 2.590407e-01	ci right 2.764948e-01	k: 2677	n:10000
MAP4K3   10000 perm   2 sec   (5078 perm/sec)   p_kst 2.677000e-01   p_cons 7.856000e-01   p_joint 4.933000e-01

Outputting figure to mutsig2_images.part000000000102/MAP4K3.7_2821_10000_0.2677_0.7856_0.4933.png
                gene_name: MAP4K3
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 6 percent done.
MAP4K4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.074812e-02	ci left: 3.641064e-01	ci right 3.831672e-01	k: 3736	n:10000
Cons ci ratio: 9.397593e-02	ci left: 1.411914e-01	ci right 1.552142e-01	k: 1481	n:10000
KS ci ratio: 3.054284e-02	ci left: 6.126129e-01	ci right 6.317159e-01	k: 6222	n:10000
MAP4K4   10000 perm   2 sec   (4498 perm/sec)   p_kst 6.222000e-01   p_cons 1.481000e-01   p_joint 3.736000e-01

Outputting figure to mutsig2_images.part000000000102/MAP4K4.7_4115_10000_0.6222_0.1481_0.3736.png
                gene_name: MAP4K4
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 8 percent done.
MAST4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.339214e-02	ci left: 7.286569e-01	ci right 7.460046e-01	k: 7374	n:10000
Cons ci ratio: 5.703829e-02	ci left: 3.115552e-01	ci right 3.299493e-01	k: 3207	n:10000
KS ci ratio: 6.736596e-03	ci left: 9.679427e-01	ci right 9.745790e-01	k: 9714	n:10000
MAST4   10000 perm   2 sec   (4041 perm/sec)   p_kst 9.714000e-01   p_cons 3.207000e-01   p_joint 7.374000e-01

Outputting figure to mutsig2_images.part000000000102/MAST4.7_8118_10000_0.9714_0.3207_0.7374.png
                gene_name: MAST4
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 10 percent done.
MAP7D3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.616116e-02	ci left: 4.092047e-01	ci right 4.286425e-01	k: 4189	n:10000
Cons ci ratio: 6.916798e-02	ci left: 2.346196e-01	ci right 2.515303e-01	k: 2430	n:10000
KS ci ratio: 5.714316e-02	ci left: 3.107615e-01	ci right 3.291435e-01	k: 3199	n:10000
MAP7D3   10000 perm   2 sec   (5861 perm/sec)   p_kst 3.199000e-01   p_cons 2.430000e-01   p_joint 4.189000e-01

Outputting figure to mutsig2_images.part000000000102/MAP7D3.6_2723_10000_0.3199_0.243_0.4189.png
                gene_name: MAP7D3
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 12 percent done.
MARCH10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.085963e-02	ci left: 4.693659e-01	ci right 4.890462e-01	k: 4792	n:10000
Cons ci ratio: 8.898945e-02	ci left: 1.552204e-01	ci right 1.697768e-01	k: 1624	n:10000
KS ci ratio: 1.235470e-02	ci left: 9.039125e-01	ci right 9.152476e-01	k: 9097	n:10000
MARCH10   10000 perm   2 sec   (6193 perm/sec)   p_kst 9.097000e-01   p_cons 1.624000e-01   p_joint 4.792000e-01

Outputting figure to mutsig2_images.part000000000102/MARCH10.6_2467_10000_0.9097_0.1624_0.4792.png
                gene_name: MARCH10
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 14 percent done.
MARCO
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.302639e-02	ci left: 5.750686e-01	ci right 5.944820e-01	k: 5848	n:10000
KS ci ratio: 1.556154e-02	ci left: 8.570234e-01	ci right 8.705639e-01	k: 8639	n:10000
MARCO   10000 perm   2 sec   (5942 perm/sec)   p_kst 8.639000e-01   p_cons 5.848000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000102/MARCO.6_1631_10000_0.8639_0.5848_1.png
                gene_name: MARCO
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 16 percent done.
MARK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.243945e-02	ci left: 4.504939e-01	ci right 4.701293e-01	k: 4603	n:10000
Cons ci ratio: 8.235680e-02	ci left: 1.770385e-01	ci right 1.923456e-01	k: 1846	n:10000
KS ci ratio: 3.077061e-02	ci left: 6.090969e-01	ci right 6.282339e-01	k: 6187	n:10000
MARK1   10000 perm   2 sec   (5629 perm/sec)   p_kst 6.187000e-01   p_cons 1.846000e-01   p_joint 4.603000e-01

Outputting figure to mutsig2_images.part000000000102/MARK1.6_2460_10000_0.6187_0.1846_0.4603.png
                gene_name: MARK1
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 18 percent done.
MAST2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.977908e-02	ci left: 1.269892e-01	ci right 1.404250e-01	k: 1336	n:10000
Cons ci ratio: 4.481289e-02	ci left: 4.236581e-01	ci right 4.431807e-01	k: 4334	n:10000
KS ci ratio: 1.715849e-01	ci left: 4.533038e-02	ci right 5.393440e-02	k: 495	n:10000
MAST2   10000 perm   2 sec   (5449 perm/sec)   p_kst 4.950000e-02   p_cons 4.334000e-01   p_joint 1.336000e-01

Joint ci ratio: 7.233016e-02	ci left: 1.233991e-01	ci right 1.327093e-01	k: 2560	n:20000
Cons ci ratio: 3.153594e-02	ci left: 4.289126e-01	ci right 4.427061e-01	k: 8716	n:20000
KS ci ratio: 1.186500e-01	ci left: 4.867167e-02	ci right 5.485947e-02	k: 1034	n:20000
MAST2   20000 perm   4 sec   (4930 perm/sec)   p_kst 5.170000e-02   p_cons 4.358000e-01   p_joint 1.280000e-01

Joint ci ratio: 7.819157e-02	ci left: 7.426955e-02	ci right 8.034595e-02	k: 2318	n:30000
Cons ci ratio: 2.566961e-02	ci left: 4.317096e-01	ci right 4.429692e-01	k: 13120	n:30000
KS ci ratio: 9.637173e-02	ci left: 4.974238e-02	ci right 5.481144e-02	k: 1567	n:30000
MAST2   30000 perm   6 sec   (4734 perm/sec)   p_kst 5.223333e-02   p_cons 4.373333e-01   p_joint 7.726667e-02

Outputting figure to mutsig2_images.part000000000102/MAST2.6_5513_30000_0.052233_0.43733_0.077267.png
                gene_name: MAST2
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.052 
        ci_ks_bounds_left: 0.050 
       ci_ks_bounds_right: 0.055 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.077 
     ci_joint_bounds_left: 0.074 
    ci_joint_bounds_right: 0.080 

Current progress: 20 percent done.
MAP3K13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.046689e-01	ci left: 1.165255e-01	ci right 1.294950e-01	k: 1229	n:10000
Cons ci ratio: 8.075213e-02	ci left: 1.829427e-01	ci right 1.984379e-01	k: 1906	n:10000
KS ci ratio: 1.069109e-01	ci left: 1.121295e-01	ci right 1.248936e-01	k: 1184	n:10000
MAP3K13   10000 perm   2 sec   (6348 perm/sec)   p_kst 1.184000e-01   p_cons 1.906000e-01   p_joint 1.229000e-01

Joint ci ratio: 6.001664e-02	ci left: 1.704976e-01	ci right 1.810969e-01	k: 3515	n:20000
Cons ci ratio: 5.744568e-02	ci left: 1.833968e-01	ci right 1.942938e-01	k: 3776	n:20000
KS ci ratio: 7.298527e-02	ci left: 1.214305e-01	ci right 1.306785e-01	k: 2520	n:20000
MAP3K13   20000 perm   4 sec   (5603 perm/sec)   p_kst 1.260000e-01   p_cons 1.888000e-01   p_joint 1.757500e-01

Outputting figure to mutsig2_images.part000000000102/MAP3K13.5_2953_20000_0.126_0.1888_0.17575.png
                gene_name: MAP3K13
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 22 percent done.
MARVELD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.805805e-02	ci left: 6.518275e-01	ci right 6.704785e-01	k: 6612	n:10000
Cons ci ratio: 4.587792e-02	ci left: 4.121944e-01	ci right 4.316511e-01	k: 4219	n:10000
KS ci ratio: 2.817083e-02	ci left: 6.500161e-01	ci right 6.686910e-01	k: 6594	n:10000
MARVELD3   10000 perm   2 sec   (6083 perm/sec)   p_kst 6.594000e-01   p_cons 4.219000e-01   p_joint 6.612000e-01

Outputting figure to mutsig2_images.part000000000102/MARVELD3.5_1860_10000_0.6594_0.4219_0.6612.png
                gene_name: MARVELD3
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 24 percent done.
MATN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.237715e-02	ci left: 2.185242e-01	ci right 2.350353e-01	k: 2267	n:10000
Cons ci ratio: 1.922228e-03	ci left: 9.965509e-01	ci right 9.985415e-01	k: 9977	n:10000
KS ci ratio: 1.071161e-01	ci left: 1.117389e-01	ci right 1.244845e-01	k: 1180	n:10000
MATN2   10000 perm   2 sec   (6388 perm/sec)   p_kst 1.180000e-01   p_cons 9.977000e-01   p_joint 2.267000e-01

Joint ci ratio: 5.494754e-02	ci left: 1.972460e-01	ci right 2.084405e-01	k: 4056	n:20000
Cons ci ratio: 1.359390e-03	ci left: 9.968762e-01	ci right 9.982728e-01	k: 19953	n:20000
KS ci ratio: 7.649875e-02	ci left: 1.115930e-01	ci right 1.205189e-01	k: 2320	n:20000
MATN2   20000 perm   4 sec   (5545 perm/sec)   p_kst 1.160000e-01   p_cons 9.976500e-01   p_joint 2.028000e-01

Outputting figure to mutsig2_images.part000000000102/MATN2.5_2943_20000_0.116_0.99765_0.2028.png
                gene_name: MATN2
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 26 percent done.
MAP3K4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.393885e-02	ci left: 4.333316e-01	ci right 4.529016e-01	k: 4431	n:10000
Cons ci ratio: 4.513363e-02	ci left: 4.201686e-01	ci right 4.396723e-01	k: 4299	n:10000
KS ci ratio: 5.242615e-02	ci left: 3.490931e-01	ci right 3.679893e-01	k: 3585	n:10000
MAP3K4   10000 perm   2 sec   (5436 perm/sec)   p_kst 3.585000e-01   p_cons 4.299000e-01   p_joint 4.431000e-01

Outputting figure to mutsig2_images.part000000000102/MAP3K4.4_4935_10000_0.3585_0.4299_0.4431.png
                gene_name: MAP3K4
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 28 percent done.
MAP3K5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.506921e-02	ci left: 3.269398e-01	ci right 3.455557e-01	k: 3362	n:10000
Cons ci ratio: 5.471340e-02	ci left: 3.298194e-01	ci right 3.484744e-01	k: 3391	n:10000
KS ci ratio: 9.476548e-02	ci left: 1.391331e-01	ci right 1.530738e-01	k: 1460	n:10000
MAP3K5   10000 perm   2 sec   (5483 perm/sec)   p_kst 1.460000e-01   p_cons 3.391000e-01   p_joint 3.362000e-01

Outputting figure to mutsig2_images.part000000000102/MAP3K5.4_4245_10000_0.146_0.3391_0.3362.png
                gene_name: MAP3K5
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 30 percent done.
MAP3K9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.028398e-01	ci left: 3.233938e-02	ci right 3.973408e-02	k: 359	n:10000
Cons ci ratio: 2.937057e-01	ci left: 1.492852e-02	ci right 2.015795e-02	k: 174	n:10000
KS ci ratio: 6.870133e-02	ci left: 2.370897e-01	ci right 2.540587e-01	k: 2455	n:10000
MAP3K9   10000 perm   2 sec   (5941 perm/sec)   p_kst 2.455000e-01   p_cons 1.740000e-02   p_joint 3.590000e-02

Joint ci ratio: 2.133397e-01	ci left: 1.482744e-02	ci right 1.841508e-02	k: 331	n:20000
Cons ci ratio: 2.053109e-01	ci left: 1.606033e-02	ci right 1.978172e-02	k: 357	n:20000
KS ci ratio: 4.774858e-02	ci left: 2.459943e-01	ci right 2.580778e-01	k: 5040	n:20000
MAP3K9   20000 perm   4 sec   (5382 perm/sec)   p_kst 2.520000e-01   p_cons 1.785000e-02   p_joint 1.655000e-02

Joint ci ratio: 1.371714e-01	ci left: 2.467957e-02	ci right 2.834624e-02	k: 794	n:30000
Cons ci ratio: 1.663795e-01	ci left: 1.665355e-02	ci right 1.970744e-02	k: 544	n:30000
KS ci ratio: 3.924513e-02	ci left: 2.446442e-01	ci right 2.544710e-01	k: 7486	n:30000
MAP3K9   30000 perm   6 sec   (5144 perm/sec)   p_kst 2.495333e-01   p_cons 1.813333e-02   p_joint 2.646667e-02

Joint ci ratio: 1.070664e-01	ci left: 3.068636e-02	ci right 3.418195e-02	k: 1296	n:40000
Cons ci ratio: 1.458017e-01	ci left: 1.645451e-02	ci right 1.906617e-02	k: 709	n:40000
KS ci ratio: 3.369423e-02	ci left: 2.485464e-01	ci right 2.570895e-01	k: 10112	n:40000
MAP3K9   40000 perm   8 sec   (4994 perm/sec)   p_kst 2.528000e-01   p_cons 1.772500e-02   p_joint 3.240000e-02

Joint ci ratio: 1.032504e-01	ci left: 2.657143e-02	ci right 2.948371e-02	k: 1400	n:50000
Cons ci ratio: 1.319696e-01	ci left: 1.619457e-02	ci right 1.850196e-02	k: 866	n:50000
KS ci ratio: 3.003728e-02	ci left: 2.502486e-01	ci right 2.579000e-01	k: 12703	n:50000
MAP3K9   50000 perm   10 sec   (4874 perm/sec)   p_kst 2.540600e-01   p_cons 1.732000e-02   p_joint 2.800000e-02

Joint ci ratio: 8.022766e-02	ci left: 3.672935e-02	ci right 3.981552e-02	k: 2295	n:60000
Cons ci ratio: 1.224259e-01	ci left: 1.577056e-02	ci right 1.784323e-02	k: 1007	n:60000
KS ci ratio: 2.746340e-02	ci left: 2.499897e-01	ci right 2.569675e-01	k: 15208	n:60000
MAP3K9   60000 perm   13 sec   (4760 perm/sec)   p_kst 2.534667e-01   p_cons 1.678333e-02   p_joint 3.825000e-02

Joint ci ratio: 7.106405e-02	ci left: 4.017484e-02	ci right 4.314902e-02	k: 2915	n:70000
Cons ci ratio: 1.113857e-01	ci left: 1.641647e-02	ci right 1.836668e-02	k: 1216	n:70000
KS ci ratio: 2.545773e-02	ci left: 2.497827e-01	ci right 2.562378e-01	k: 17710	n:70000
MAP3K9   70000 perm   15 sec   (4658 perm/sec)   p_kst 2.530000e-01   p_cons 1.737143e-02   p_joint 4.164286e-02

Joint ci ratio: 6.910851e-02	ci left: 3.732477e-02	ci right 4.000882e-02	k: 3092	n:80000
Cons ci ratio: 1.041103e-01	ci left: 1.650520e-02	ci right 1.833003e-02	k: 1392	n:80000
KS ci ratio: 2.382310e-02	ci left: 2.498409e-01	ci right 2.558771e-01	k: 20228	n:80000
MAP3K9   80000 perm   18 sec   (4569 perm/sec)   p_kst 2.528500e-01   p_cons 1.740000e-02   p_joint 3.865000e-02

Joint ci ratio: 6.681790e-02	ci left: 3.560125e-02	ci right 3.807317e-02	k: 3314	n:90000
Cons ci ratio: 9.870645e-02	ci left: 1.637145e-02	ci right 1.808209e-02	k: 1549	n:90000
KS ci ratio: 2.245577e-02	ci left: 2.500958e-01	ci right 2.557868e-01	k: 22764	n:90000
MAP3K9   90000 perm   20 sec   (4489 perm/sec)   p_kst 2.529333e-01   p_cons 1.721111e-02   p_joint 3.682222e-02

Outputting figure to mutsig2_images.part000000000102/MAP3K9.4_3409_90000_0.25293_0.017211_0.036822.png
                gene_name: MAP3K9
               theta_stop: 0.099 
                    nperm: 90000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.017 
      ci_cons_bounds_left: 0.016 
     ci_cons_bounds_right: 0.018 
                  p_joint: 0.037 
     ci_joint_bounds_left: 0.036 
    ci_joint_bounds_right: 0.038 

Current progress: 32 percent done.
MAP7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.185929e-02	ci left: 7.543371e-01	ci right 7.711095e-01	k: 7628	n:10000
Cons ci ratio: 3.364905e-02	ci left: 5.659423e-01	ci right 5.854136e-01	k: 5757	n:10000
KS ci ratio: 2.608320e-02	ci left: 6.839552e-01	ci right 7.021322e-01	k: 6931	n:10000
MAP7   10000 perm   2 sec   (6648 perm/sec)   p_kst 6.931000e-01   p_cons 5.757000e-01   p_joint 7.628000e-01

Outputting figure to mutsig2_images.part000000000102/MAP7.4_2322_10000_0.6931_0.5757_0.7628.png
                gene_name: MAP7
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 34 percent done.
MAP7D2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.170758e-01	ci left: 9.486876e-02	ci right 1.067649e-01	k: 1007	n:10000
Cons ci ratio: 4.975474e-02	ci left: 3.733580e-01	ci right 3.925103e-01	k: 3829	n:10000
KS ci ratio: 2.394432e-01	ci left: 2.296967e-02	ci right 2.931046e-02	k: 260	n:10000
MAP7D2   10000 perm   2 sec   (6258 perm/sec)   p_kst 2.600000e-02   p_cons 3.829000e-01   p_joint 1.007000e-01

Joint ci ratio: 1.132683e-01	ci left: 5.329115e-02	ci right 5.973854e-02	k: 1129	n:20000
Cons ci ratio: 3.483439e-02	ci left: 3.808894e-01	ci right 3.944433e-01	k: 7753	n:20000
KS ci ratio: 1.738128e-01	ci left: 2.264113e-02	ci right 2.699852e-02	k: 495	n:20000
MAP7D2   20000 perm   4 sec   (5656 perm/sec)   p_kst 2.475000e-02   p_cons 3.876500e-01   p_joint 5.645000e-02

Joint ci ratio: 7.514327e-02	ci left: 8.003302e-02	ci right 8.631465e-02	k: 2494	n:30000
Cons ci ratio: 2.853015e-02	ci left: 3.806851e-01	ci right 3.917369e-01	k: 11586	n:30000
KS ci ratio: 1.423115e-01	ci left: 2.290880e-02	ci right 2.645073e-02	k: 739	n:30000
MAP7D2   30000 perm   6 sec   (5410 perm/sec)   p_kst 2.463333e-02   p_cons 3.862000e-01   p_joint 8.313333e-02

Joint ci ratio: 7.200891e-02	ci left: 6.648588e-02	ci right 7.147691e-02	k: 2758	n:40000
Cons ci ratio: 2.467961e-02	ci left: 3.819733e-01	ci right 3.915431e-01	k: 15470	n:40000
KS ci ratio: 1.229057e-01	ci left: 2.327380e-02	ci right 2.634571e-02	k: 991	n:40000
MAP7D2   40000 perm   8 sec   (5205 perm/sec)   p_kst 2.477500e-02   p_cons 3.867500e-01   p_joint 6.895000e-02

Joint ci ratio: 8.820492e-02	ci left: 3.632141e-02	ci right 3.969250e-02	k: 1899	n:50000
Cons ci ratio: 2.281481e-02	ci left: 3.669828e-01	ci right 3.754721e-01	k: 18561	n:50000
KS ci ratio: 1.102041e-01	ci left: 2.331828e-02	ci right 2.605728e-02	k: 1233	n:50000
MAP7D2   50000 perm   10 sec   (5069 perm/sec)   p_kst 2.466000e-02   p_cons 3.712200e-01   p_joint 3.798000e-02

Joint ci ratio: 8.536640e-02	ci left: 3.249884e-02	ci right 3.541313e-02	k: 2036	n:60000
Cons ci ratio: 2.080721e-02	ci left: 3.677979e-01	ci right 3.755479e-01	k: 22300	n:60000
KS ci ratio: 1.017999e-01	ci left: 2.288762e-02	ci right 2.535871e-02	k: 1446	n:60000
MAP7D2   60000 perm   12 sec   (4959 perm/sec)   p_kst 2.410000e-02   p_cons 3.716667e-01   p_joint 3.393333e-02

Joint ci ratio: 7.609169e-02	ci left: 3.513690e-02	ci right 3.793026e-02	k: 2556	n:70000
Cons ci ratio: 1.931913e-02	ci left: 3.667496e-01	ci right 3.739183e-01	k: 25923	n:70000
KS ci ratio: 9.456949e-02	ci left: 2.282302e-02	ci right 2.510239e-02	k: 1676	n:70000
MAP7D2   70000 perm   14 sec   (4862 perm/sec)   p_kst 2.394286e-02   p_cons 3.703286e-01   p_joint 3.651429e-02

Outputting figure to mutsig2_images.part000000000102/MAP7D2.4_2386_70000_0.023943_0.37033_0.036514.png
                gene_name: MAP7D2
               theta_stop: 0.095 
                    nperm: 70000 
                     p_ks: 0.024 
        ci_ks_bounds_left: 0.023 
       ci_ks_bounds_right: 0.025 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.037 
     ci_joint_bounds_left: 0.035 
    ci_joint_bounds_right: 0.038 

Current progress: 36 percent done.
MAPK6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.719183e-02	ci left: 5.163572e-01	ci right 5.360275e-01	k: 5262	n:10000
Cons ci ratio: 2.186533e-02	ci left: 7.542360e-01	ci right 7.710108e-01	k: 7627	n:10000
KS ci ratio: 4.999771e-02	ci left: 3.710696e-01	ci right 3.902000e-01	k: 3806	n:10000
MAPK6   10000 perm   2 sec   (6368 perm/sec)   p_kst 3.806000e-01   p_cons 7.627000e-01   p_joint 5.262000e-01

Outputting figure to mutsig2_images.part000000000102/MAPK6.4_2186_10000_0.3806_0.7627_0.5262.png
                gene_name: MAPK6
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 38 percent done.
MAPKAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.372486e-02	ci left: 5.648393e-01	ci right 5.843172e-01	k: 5746	n:10000
KS ci ratio: 2.029646e-02	ci left: 7.804640e-01	ci right 7.965676e-01	k: 7886	n:10000
MAPKAP1   10000 perm   2 sec   (6456 perm/sec)   p_kst 7.886000e-01   p_cons 5.746000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000102/MAPKAP1.4_1631_10000_0.7886_0.5746_1.png
                gene_name: MAPKAP1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 40 percent done.
MAPT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.377486e-02	ci left: 3.375666e-01	ci right 3.563226e-01	k: 3469	n:10000
Cons ci ratio: 1.227051e-01	ci left: 8.689066e-02	ci right 9.834794e-02	k: 925	n:10000
KS ci ratio: 1.148566e-02	ci left: 9.155397e-01	ci right 9.262136e-01	k: 9210	n:10000
MAPT   10000 perm   2 sec   (5728 perm/sec)   p_kst 9.210000e-01   p_cons 9.250000e-02   p_joint 3.469000e-01

Joint ci ratio: 4.232054e-02	ci left: 2.938025e-01	ci right 3.065556e-01	k: 6003	n:20000
Cons ci ratio: 8.577564e-02	ci left: 9.048006e-02	ci right 9.863825e-02	k: 1890	n:20000
KS ci ratio: 8.108688e-03	ci left: 9.173795e-01	ci right 9.248976e-01	k: 18424	n:20000
MAPT   20000 perm   4 sec   (5526 perm/sec)   p_kst 9.212000e-01   p_cons 9.450000e-02   p_joint 3.001500e-01

Outputting figure to mutsig2_images.part000000000102/MAPT.4_2387_20000_0.9212_0.0945_0.30015.png
                gene_name: MAPT
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.095 
      ci_cons_bounds_left: 0.090 
     ci_cons_bounds_right: 0.099 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 42 percent done.
MARK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.256777e-02	ci left: 4.489967e-01	ci right 4.686273e-01	k: 4588	n:10000
Cons ci ratio: 5.584290e-03	ci left: 9.772755e-01	ci right 9.828399e-01	k: 9802	n:10000
KS ci ratio: 5.544133e-02	ci left: 3.239612e-01	ci right 3.425360e-01	k: 3332	n:10000
MARK3   10000 perm   2 sec   (6295 perm/sec)   p_kst 3.332000e-01   p_cons 9.802000e-01   p_joint 4.588000e-01

Outputting figure to mutsig2_images.part000000000102/MARK3.4_2334_10000_0.3332_0.9802_0.4588.png
                gene_name: MARK3
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 44 percent done.
MATN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.705415e-02	ci left: 3.999392e-01	ci right 4.193135e-01	k: 4096	n:10000
Cons ci ratio: 6.006440e-02	ci left: 2.896400e-01	ci right 3.076774e-01	k: 2986	n:10000
KS ci ratio: 3.562533e-02	ci left: 5.377820e-01	ci right 5.573903e-01	k: 5476	n:10000
MATN4   10000 perm   2 sec   (6253 perm/sec)   p_kst 5.476000e-01   p_cons 2.986000e-01   p_joint 4.096000e-01

Outputting figure to mutsig2_images.part000000000102/MATN4.4_1782_10000_0.5476_0.2986_0.4096.png
                gene_name: MATN4
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 46 percent done.
MATR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.454850e-02	ci left: 2.084612e-01	ci right 2.247043e-01	k: 2165	n:10000
Cons ci ratio: 9.353182e-02	ci left: 1.423679e-01	ci right 1.564370e-01	k: 1493	n:10000
KS ci ratio: 6.309380e-02	ci left: 2.696308e-01	ci right 2.872985e-01	k: 2784	n:10000
MATR3   10000 perm   2 sec   (6138 perm/sec)   p_kst 2.784000e-01   p_cons 1.493000e-01   p_joint 2.165000e-01

Outputting figure to mutsig2_images.part000000000102/MATR3.4_2600_10000_0.2784_0.1493_0.2165.png
                gene_name: MATR3
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 48 percent done.
MAP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.405090e-02	ci left: 7.176482e-01	ci right 7.352197e-01	k: 7265	n:10000
Cons ci ratio: 4.724923e-02	ci left: 3.979471e-01	ci right 4.173068e-01	k: 4076	n:10000
KS ci ratio: 2.773937e-02	ci left: 6.569607e-01	ci right 6.755424e-01	k: 6663	n:10000
MAP4   10000 perm   2 sec   (5520 perm/sec)   p_kst 6.663000e-01   p_cons 4.076000e-01   p_joint 7.265000e-01

Outputting figure to mutsig2_images.part000000000102/MAP4.3_4902_10000_0.6663_0.4076_0.7265.png
                gene_name: MAP4
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 50 percent done.
MAP4K1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.533157e-02	ci left: 5.418888e-01	ci right 5.614810e-01	k: 5517	n:10000
Cons ci ratio: 6.929979e-02	ci left: 2.339280e-01	ci right 2.508223e-01	k: 2423	n:10000
KS ci ratio: 2.849127e-02	ci left: 6.448846e-01	ci right 6.636255e-01	k: 6543	n:10000
MAP4K1   10000 perm   2 sec   (6435 perm/sec)   p_kst 6.543000e-01   p_cons 2.423000e-01   p_joint 5.517000e-01

Outputting figure to mutsig2_images.part000000000102/MAP4K1.3_2692_10000_0.6543_0.2423_0.5517.png
                gene_name: MAP4K1
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 52 percent done.
MAPK8IP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.049311e-02	ci left: 4.738613e-01	ci right 4.935482e-01	k: 4837	n:10000
Cons ci ratio: 4.063115e-02	ci left: 4.721630e-01	ci right 4.918475e-01	k: 4820	n:10000
KS ci ratio: 5.286200e-02	ci left: 3.453165e-01	ci right 3.641682e-01	k: 3547	n:10000
MAPK8IP3   10000 perm   2 sec   (5968 perm/sec)   p_kst 3.547000e-01   p_cons 4.820000e-01   p_joint 4.837000e-01

Outputting figure to mutsig2_images.part000000000102/MAPK8IP3.3_4155_10000_0.3547_0.482_0.4837.png
                gene_name: MAPK8IP3
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 54 percent done.
MAPKAPK5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.269027e-01	ci left: 8.154699e-02	ci right 9.269490e-02	k: 870	n:10000
Cons ci ratio: 2.271018e-02	ci left: 7.400768e-01	ci right 7.571782e-01	k: 7487	n:10000
KS ci ratio: 1.980390e-01	ci left: 3.395684e-02	ci right 4.151552e-02	k: 376	n:10000
MAPKAPK5   10000 perm   1 sec   (7195 perm/sec)   p_kst 3.760000e-02   p_cons 7.487000e-01   p_joint 8.700000e-02

Joint ci ratio: 1.125835e-01	ci left: 5.392380e-02	ci right 6.040569e-02	k: 1142	n:20000
Cons ci ratio: 1.609067e-02	ci left: 7.418718e-01	ci right 7.539561e-01	k: 14959	n:20000
KS ci ratio: 1.434327e-01	ci left: 3.341257e-02	ci right 3.862344e-02	k: 719	n:20000
MAPKAPK5   20000 perm   3 sec   (6402 perm/sec)   p_kst 3.595000e-02   p_cons 7.479500e-01   p_joint 5.710000e-02

Joint ci ratio: 9.126319e-02	ci left: 5.528338e-02	ci right 6.060264e-02	k: 1737	n:30000
Cons ci ratio: 1.316996e-02	ci left: 7.420738e-01	ci right 7.519450e-01	k: 22411	n:30000
KS ci ratio: 1.152444e-01	ci left: 3.498949e-02	ci right 3.930075e-02	k: 1113	n:30000
MAPKAPK5   30000 perm   5 sec   (6086 perm/sec)   p_kst 3.710000e-02   p_cons 7.470333e-01   p_joint 5.790000e-02

Joint ci ratio: 9.117002e-02	ci left: 4.215749e-02	ci right 4.620901e-02	k: 1766	n:40000
Cons ci ratio: 1.135600e-02	ci left: 7.443936e-01	ci right 7.529202e-01	k: 29947	n:40000
KS ci ratio: 1.006645e-01	ci left: 3.468345e-02	ci right 3.838423e-02	k: 1460	n:40000
MAPKAPK5   40000 perm   7 sec   (5881 perm/sec)   p_kst 3.650000e-02   p_cons 7.486750e-01   p_joint 4.415000e-02

Joint ci ratio: 7.097477e-02	ci left: 5.545556e-02	ci right 5.955600e-02	k: 2874	n:50000
Cons ci ratio: 1.016454e-02	ci left: 7.445721e-01	ci right 7.521990e-01	k: 37420	n:50000
KS ci ratio: 9.017185e-02	ci left: 3.477538e-02	ci right 3.807872e-02	k: 1820	n:50000
MAPKAPK5   50000 perm   9 sec   (5721 perm/sec)   p_kst 3.640000e-02   p_cons 7.484000e-01   p_joint 5.748000e-02

Outputting figure to mutsig2_images.part000000000102/MAPKAPK5.3_1478_50000_0.0364_0.7484_0.05748.png
                gene_name: MAPKAPK5
               theta_stop: 0.090 
                    nperm: 50000 
                     p_ks: 0.036 
        ci_ks_bounds_left: 0.035 
       ci_ks_bounds_right: 0.038 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.057 
     ci_joint_bounds_left: 0.055 
    ci_joint_bounds_right: 0.060 

Current progress: 56 percent done.
MARCH11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.600800e-02	ci left: 5.324742e-01	ci right 5.521012e-01	k: 5423	n:10000
Cons ci ratio: 1.448894e-01	ci left: 6.323884e-02	ci right 7.321448e-02	k: 681	n:10000
KS ci ratio: 5.104208e-02	ci left: 3.614212e-01	ci right 3.804540e-01	k: 3709	n:10000
MARCH11   10000 perm   1 sec   (7087 perm/sec)   p_kst 3.709000e-01   p_cons 6.810000e-02   p_joint 5.423000e-01

Joint ci ratio: 2.159122e-02	ci left: 6.155888e-01	ci right 6.290757e-01	k: 12447	n:20000
Cons ci ratio: 1.016569e-01	ci left: 6.567166e-02	ci right 7.275421e-02	k: 1383	n:20000
KS ci ratio: 3.580763e-02	ci left: 3.679354e-01	ci right 3.814011e-01	k: 7493	n:20000
MARCH11   20000 perm   3 sec   (6365 perm/sec)   p_kst 3.746500e-01   p_cons 6.915000e-02   p_joint 6.223500e-01

Joint ci ratio: 1.873610e-02	ci left: 5.877494e-01	ci right 5.988992e-01	k: 17800	n:30000
Cons ci ratio: 8.341394e-02	ci left: 6.569950e-02	ci right 7.145106e-02	k: 2056	n:30000
KS ci ratio: 2.917032e-02	ci left: 3.702485e-01	ci right 3.812422e-01	k: 11272	n:30000
MARCH11   30000 perm   5 sec   (6069 perm/sec)   p_kst 3.757333e-01   p_cons 6.853333e-02   p_joint 5.933333e-01

Outputting figure to mutsig2_images.part000000000102/MARCH11.3_1225_30000_0.37573_0.068533_0.59333.png
                gene_name: MARCH11
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.069 
      ci_cons_bounds_left: 0.066 
     ci_cons_bounds_right: 0.071 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.60 

Current progress: 58 percent done.
MARK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.315188e-02	ci left: 3.428323e-01	ci right 3.616539e-01	k: 3522	n:10000
Cons ci ratio: 1.945788e-01	ci left: 3.519511e-02	ci right 4.287640e-02	k: 389	n:10000
KS ci ratio: 1.143038e-02	ci left: 9.162609e-01	ci right 9.268919e-01	k: 9217	n:10000
MARK2   10000 perm   1 sec   (6685 perm/sec)   p_kst 9.217000e-01   p_cons 3.890000e-02   p_joint 3.522000e-01

Joint ci ratio: 3.503700e-02	ci left: 3.781487e-01	ci right 3.916848e-01	k: 7698	n:20000
Cons ci ratio: 1.377751e-01	ci left: 3.621414e-02	ci right 4.162097e-02	k: 777	n:20000
KS ci ratio: 8.097519e-03	ci left: 9.175838e-01	ci right 9.250932e-01	k: 18428	n:20000
MARK2   20000 perm   3 sec   (5996 perm/sec)   p_kst 9.214000e-01   p_cons 3.885000e-02   p_joint 3.849000e-01

Joint ci ratio: 2.774956e-02	ci left: 3.938843e-01	ci right 4.050018e-01	k: 11983	n:30000
Cons ci ratio: 1.117486e-01	ci left: 3.719416e-02	ci right 4.162894e-02	k: 1181	n:30000
KS ci ratio: 6.571498e-03	ci left: 9.191791e-01	ci right 9.252722e-01	k: 27668	n:30000
MARK2   30000 perm   5 sec   (5721 perm/sec)   p_kst 9.222667e-01   p_cons 3.936667e-02   p_joint 3.994333e-01

Joint ci ratio: 2.495364e-02	ci left: 3.767609e-01	ci right 3.863063e-01	k: 15261	n:40000
Cons ci ratio: 9.693766e-02	ci left: 3.736799e-02	ci right 4.119926e-02	k: 1570	n:40000
KS ci ratio: 5.669687e-03	ci left: 9.201410e-01	ci right 9.253974e-01	k: 36912	n:40000
MARK2   40000 perm   7 sec   (5535 perm/sec)   p_kst 9.228000e-01   p_cons 3.925000e-02   p_joint 3.815250e-01

Outputting figure to mutsig2_images.part000000000102/MARK2.3_2443_40000_0.9228_0.03925_0.38153.png
                gene_name: MARK2
               theta_stop: 0.097 
                    nperm: 40000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.039 
      ci_cons_bounds_left: 0.037 
     ci_cons_bounds_right: 0.041 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.39 

Current progress: 60 percent done.
MARK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.468708e-02	ci left: 7.070498e-01	ci right 7.248243e-01	k: 7160	n:10000
KS ci ratio: 2.797044e-02	ci left: 6.532365e-01	ci right 6.718687e-01	k: 6626	n:10000
MARK4   10000 perm   1 sec   (6765 perm/sec)   p_kst 6.626000e-01   p_cons 7.160000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000102/MARK4.3_2139_10000_0.6626_0.716_1.png
                gene_name: MARK4
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
MAS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.338209e-02	ci left: 2.137878e-01	ci right 2.301745e-01	k: 2219	n:10000
Cons ci ratio: 4.840307e-02	ci left: 3.863960e-01	ci right 4.056646e-01	k: 3960	n:10000
KS ci ratio: 1.173999e-01	ci left: 9.438193e-02	ci right 1.062521e-01	k: 1002	n:10000
MAS1   10000 perm   1 sec   (7153 perm/sec)   p_kst 1.002000e-01   p_cons 3.960000e-01   p_joint 2.219000e-01

Joint ci ratio: 4.854685e-02	ci left: 2.398451e-01	ci right 2.518288e-01	k: 4916	n:20000
Cons ci ratio: 3.304264e-02	ci left: 4.061642e-01	ci right 4.198611e-01	k: 8260	n:20000
KS ci ratio: 8.188621e-02	ci left: 9.857491e-02	ci right 1.070410e-01	k: 2055	n:20000
MAS1   20000 perm   3 sec   (6396 perm/sec)   p_kst 1.027500e-01   p_cons 4.130000e-01   p_joint 2.458000e-01

Outputting figure to mutsig2_images.part000000000102/MAS1.3_982_20000_0.10275_0.413_0.2458.png
                gene_name: MAS1
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.099 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 64 percent done.
MAST1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.772737e-01	ci left: 5.108009e-03	ci right 8.389267e-03	k: 66	n:10000
Cons ci ratio: 1.385306e+00	ci left: 2.814811e-04	ci right 1.441732e-03	k: 7	n:10000
KS ci ratio: 1.341162e-01	ci left: 7.339876e-02	ci right 8.404819e-02	k: 786	n:10000
MAST1   10000 perm   2 sec   (5755 perm/sec)   p_kst 7.860000e-02   p_cons 7.000000e-04   p_joint 6.600000e-03

Joint ci ratio: 5.772931e-01	ci left: 1.641624e-03	ci right 3.009532e-03	k: 45	n:20000
Cons ci ratio: 8.988600e-01	ci left: 5.334815e-04	ci right 1.422016e-03	k: 18	n:20000
KS ci ratio: 9.483644e-02	ci left: 7.495571e-02	ci right 8.246732e-02	k: 1573	n:20000
MAST1   20000 perm   4 sec   (5214 perm/sec)   p_kst 7.865000e-02   p_cons 9.000000e-04   p_joint 2.250000e-03

Joint ci ratio: 6.529304e-01	ci left: 8.127564e-04	ci right 1.622181e-03	k: 35	n:30000
Cons ci ratio: 1.011870e+00	ci left: 2.551537e-04	ci right 7.828635e-04	k: 14	n:30000
KS ci ratio: 7.633414e-02	ci left: 7.770740e-02	ci right 8.390740e-02	k: 2423	n:30000
MAST1   30000 perm   6 sec   (4997 perm/sec)   p_kst 8.076667e-02   p_cons 4.666667e-04   p_joint 1.166667e-03

Joint ci ratio: 7.999166e-01	ci left: 3.645345e-04	ci right 8.626582e-04	k: 23	n:40000
Cons ci ratio: 8.990848e-01	ci left: 2.667196e-04	ci right 7.111011e-04	k: 18	n:40000
KS ci ratio: 6.679569e-02	ci left: 7.662090e-02	ci right 8.194037e-02	k: 3170	n:40000
MAST1   40000 perm   8 sec   (4824 perm/sec)   p_kst 7.925000e-02   p_cons 4.500000e-04   p_joint 5.750000e-04

Joint ci ratio: 6.195523e-01	ci left: 5.547132e-04	ci right 1.066133e-03	k: 39	n:50000
Cons ci ratio: 7.685677e-01	ci left: 3.235989e-04	ci right 7.380108e-04	k: 25	n:50000
KS ci ratio: 5.942503e-02	ci left: 7.767594e-02	ci right 8.245295e-02	k: 4002	n:50000
MAST1   50000 perm   11 sec   (4705 perm/sec)   p_kst 8.004000e-02   p_cons 5.000000e-04   p_joint 7.800000e-04

Joint ci ratio: 5.189657e-01	ci left: 7.051046e-04	ci right 1.211842e-03	k: 56	n:60000
Cons ci ratio: 7.038650e-01	ci left: 3.373725e-04	ci right 7.137048e-04	k: 30	n:60000
KS ci ratio: 5.481132e-02	ci left: 7.639294e-02	ci right 8.071460e-02	k: 4712	n:60000
MAST1   60000 perm   13 sec   (4619 perm/sec)   p_kst 7.853333e-02   p_cons 5.000000e-04   p_joint 9.333333e-04

Joint ci ratio: 3.684622e-01	ci left: 1.317612e-03	ci right 1.924903e-03	k: 112	n:70000
Cons ci ratio: 6.442691e-01	ci left: 3.602246e-04	ci right 7.119178e-04	k: 36	n:70000
KS ci ratio: 5.075799e-02	ci left: 7.651793e-02	ci right 8.051709e-02	k: 5495	n:70000
MAST1   70000 perm   15 sec   (4536 perm/sec)   p_kst 7.850000e-02   p_cons 5.142857e-04   p_joint 1.600000e-03

Joint ci ratio: 3.489441e-01	ci left: 1.300773e-03	ci right 1.861370e-03	k: 125	n:80000
Cons ci ratio: 6.120404e-01	ci left: 3.572306e-04	ci right 6.807965e-04	k: 40	n:80000
KS ci ratio: 4.748038e-02	ci left: 7.664532e-02	ci right 8.038532e-02	k: 6280	n:80000
MAST1   80000 perm   18 sec   (4460 perm/sec)   p_kst 7.850000e-02   p_cons 5.000000e-04   p_joint 1.562500e-03

Joint ci ratio: 3.841633e-01	ci left: 9.342257e-04	ci right 1.387803e-03	k: 103	n:90000
Cons ci ratio: 5.778215e-01	ci left: 3.647261e-04	ci right 6.689828e-04	k: 45	n:90000
KS ci ratio: 4.483428e-02	ci left: 7.653096e-02	ci right 8.005183e-02	k: 7045	n:90000
MAST1   90000 perm   21 sec   (4386 perm/sec)   p_kst 7.827778e-02   p_cons 5.000000e-04   p_joint 1.144444e-03

Joint ci ratio: 2.009739e-01	ci left: 3.409114e-03	ci right 4.180107e-03	k: 378	n:100000
Cons ci ratio: 3.978206e-01	ci left: 7.776701e-04	ci right 1.172200e-03	k: 96	n:100000
KS ci ratio: 4.267829e-02	ci left: 7.613720e-02	ci right 7.946734e-02	k: 7779	n:100000
MAST1   100000 perm   23 sec   (4316 perm/sec)   p_kst 7.779000e-02   p_cons 9.600000e-04   p_joint 3.780000e-03

Joint ci ratio: 1.981438e-01	ci left: 3.194162e-03	ci right 3.905137e-03	k: 389	n:110000
Cons ci ratio: 3.787746e-01	ci left: 7.890118e-04	ci right 1.165373e-03	k: 106	n:110000
KS ci ratio: 4.065612e-02	ci left: 7.634078e-02	ci right 7.951788e-02	k: 8571	n:110000
MAST1   110000 perm   26 sec   (4245 perm/sec)   p_kst 7.791818e-02   p_cons 9.636364e-04   p_joint 3.536364e-03

Joint ci ratio: 3.231167e-01	ci left: 1.027414e-03	ci right 1.430645e-03	k: 146	n:120000
Cons ci ratio: 3.735844e-01	ci left: 7.458937e-04	ci right 1.095618e-03	k: 109	n:120000
KS ci ratio: 3.894849e-02	ci left: 7.632357e-02	ci right 7.936354e-02	k: 9340	n:120000
MAST1   120000 perm   29 sec   (4183 perm/sec)   p_kst 7.783333e-02   p_cons 9.083333e-04   p_joint 1.216667e-03

Joint ci ratio: 3.136616e-01	ci left: 1.012081e-03	ci right 1.395342e-03	k: 155	n:130000
Cons ci ratio: 3.653788e-01	ci left: 7.234062e-04	ci right 1.053359e-03	k: 114	n:130000
KS ci ratio: 3.731946e-02	ci left: 7.676897e-02	ci right 7.969603e-02	k: 10169	n:130000
MAST1   130000 perm   32 sec   (4120 perm/sec)   p_kst 7.822308e-02   p_cons 8.769231e-04   p_joint 1.192308e-03

Joint ci ratio: 2.276036e-01	ci left: 1.873737e-03	ci right 2.361538e-03	k: 295	n:140000
Cons ci ratio: 3.576907e-01	ci left: 7.042034e-04	ci right 1.017067e-03	k: 119	n:140000
KS ci ratio: 3.595002e-02	ci left: 7.686962e-02	ci right 7.969073e-02	k: 10958	n:140000
MAST1   140000 perm   34 sec   (4062 perm/sec)   p_kst 7.827143e-02   p_cons 8.500000e-04   p_joint 2.107143e-03

Joint ci ratio: 2.502342e-01	ci left: 1.429085e-03	ci right 1.843894e-03	k: 244	n:150000
Cons ci ratio: 3.463333e-01	ci left: 7.058752e-04	ci right 1.007292e-03	k: 127	n:150000
KS ci ratio: 3.480632e-02	ci left: 7.660804e-02	ci right 7.932830e-02	k: 11694	n:150000
MAST1   150000 perm   37 sec   (4006 perm/sec)   p_kst 7.796000e-02   p_cons 8.466667e-04   p_joint 1.626667e-03

Joint ci ratio: 2.261083e-01	ci left: 1.663078e-03	ci right 2.092794e-03	k: 299	n:160000
Cons ci ratio: 3.288121e-01	ci left: 7.418485e-04	ci right 1.039217e-03	k: 141	n:160000
KS ci ratio: 3.373286e-02	ci left: 7.651687e-02	ci right 7.914846e-02	k: 12452	n:160000
MAST1   160000 perm   41 sec   (3947 perm/sec)   p_kst 7.782500e-02   p_cons 8.812500e-04   p_joint 1.868750e-03

Joint ci ratio: 2.220787e-01	ci left: 1.626320e-03	ci right 2.038025e-03	k: 310	n:170000
Cons ci ratio: 3.231754e-01	ci left: 7.252144e-04	ci right 1.009899e-03	k: 146	n:170000
KS ci ratio: 3.265123e-02	ci left: 7.688127e-02	ci right 7.943902e-02	k: 13286	n:170000
MAST1   170000 perm   44 sec   (3892 perm/sec)   p_kst 7.815294e-02   p_cons 8.588235e-04   p_joint 1.823529e-03

Joint ci ratio: 1.917402e-01	ci left: 2.094554e-03	ci right 2.543938e-03	k: 416	n:180000
Cons ci ratio: 3.178188e-01	ci left: 7.104672e-04	ci right 9.838000e-04	k: 151	n:180000
KS ci ratio: 3.178106e-02	ci left: 7.669346e-02	ci right 7.917571e-02	k: 14027	n:180000
MAST1   180000 perm   47 sec   (3834 perm/sec)   p_kst 7.792778e-02   p_cons 8.388889e-04   p_joint 2.311111e-03

Joint ci ratio: 1.436261e-01	ci left: 3.624704e-03	ci right 4.190597e-03	k: 741	n:190000
Cons ci ratio: 3.097719e-01	ci left: 7.118644e-04	ci right 9.774310e-04	k: 159	n:190000
KS ci ratio: 3.092247e-02	ci left: 7.677709e-02	ci right 7.919370e-02	k: 14816	n:190000
MAST1   190000 perm   50 sec   (3776 perm/sec)   p_kst 7.797895e-02   p_cons 8.368421e-04   p_joint 3.900000e-03

Joint ci ratio: 1.406282e-01	ci left: 3.597776e-03	ci right 4.146758e-03	k: 773	n:200000
Cons ci ratio: 2.996410e-01	ci left: 7.270685e-04	ci right 9.877493e-04	k: 170	n:200000
KS ci ratio: 3.012886e-02	ci left: 7.685812e-02	ci right 7.921413e-02	k: 15606	n:200000
MAST1   200000 perm   54 sec   (3720 perm/sec)   p_kst 7.803000e-02   p_cons 8.500000e-04   p_joint 3.865000e-03

Joint ci ratio: 1.512007e-01	ci left: 2.949196e-03	ci right 3.436106e-03	k: 669	n:210000
Cons ci ratio: 2.945203e-01	ci left: 7.188881e-04	ci right 9.714089e-04	k: 176	n:210000
KS ci ratio: 2.941965e-02	ci left: 7.680445e-02	ci right 7.910245e-02	k: 16369	n:210000
MAST1   210000 perm   57 sec   (3669 perm/sec)   p_kst 7.794762e-02   p_cons 8.380952e-04   p_joint 3.185714e-03

Joint ci ratio: 1.590193e-01	ci left: 2.535473e-03	ci right 2.977790e-03	k: 605	n:220000
Cons ci ratio: 2.904489e-01	ci left: 7.072707e-04	ci right 9.516450e-04	k: 181	n:220000
KS ci ratio: 2.872284e-02	ci left: 7.693237e-02	ci right 7.917877e-02	k: 17171	n:220000
MAST1   220000 perm   61 sec   (3619 perm/sec)   p_kst 7.805000e-02   p_cons 8.227273e-04   p_joint 2.750000e-03

Joint ci ratio: 1.648589e-01	ci left: 2.249996e-03	ci right 2.658356e-03	k: 563	n:230000
Cons ci ratio: 2.835228e-01	ci left: 7.128346e-04	ci right 9.522078e-04	k: 190	n:230000
KS ci ratio: 2.806907e-02	ci left: 7.707134e-02	ci right 7.926974e-02	k: 17978	n:230000
MAST1   230000 perm   64 sec   (3574 perm/sec)   p_kst 7.816522e-02   p_cons 8.260870e-04   p_joint 2.447826e-03

Joint ci ratio: 1.461759e-01	ci left: 2.769077e-03	ci right 3.209729e-03	k: 716	n:240000
Cons ci ratio: 2.784668e-01	ci left: 7.102446e-04	ci right 9.437492e-04	k: 197	n:240000
KS ci ratio: 2.749453e-02	ci left: 7.700879e-02	ci right 7.915974e-02	k: 18739	n:240000
MAST1   240000 perm   68 sec   (3529 perm/sec)   p_kst 7.807917e-02   p_cons 8.208333e-04   p_joint 2.983333e-03

Joint ci ratio: 1.349446e-01	ci left: 3.136936e-03	ci right 3.594697e-03	k: 840	n:250000
Cons ci ratio: 2.743423e-01	ci left: 7.041713e-04	ci right 9.316589e-04	k: 203	n:250000
KS ci ratio: 2.697340e-02	ci left: 7.684833e-02	ci right 7.895347e-02	k: 19474	n:250000
MAST1   250000 perm   72 sec   (3484 perm/sec)   p_kst 7.789600e-02   p_cons 8.120000e-04   p_joint 3.360000e-03

Joint ci ratio: 1.327542e-01	ci left: 3.120369e-03	ci right 3.567739e-03	k: 868	n:260000
Cons ci ratio: 2.697539e-01	ci left: 7.021746e-04	ci right 9.245810e-04	k: 210	n:260000
KS ci ratio: 2.649004e-02	ci left: 7.665087e-02	ci right 7.871240e-02	k: 20196	n:260000
MAST1   260000 perm   76 sec   (3440 perm/sec)   p_kst 7.767692e-02   p_cons 8.076923e-04   p_joint 3.338462e-03

Joint ci ratio: 1.296559e-01	ci left: 3.155253e-03	ci right 3.596254e-03	k: 910	n:270000
Cons ci ratio: 2.635793e-01	ci left: 7.107300e-04	ci right 9.298437e-04	k: 220	n:270000
KS ci ratio: 2.598398e-02	ci left: 7.672975e-02	ci right 7.875340e-02	k: 20989	n:270000
MAST1   270000 perm   79 sec   (3399 perm/sec)   p_kst 7.773704e-02   p_cons 8.148148e-04   p_joint 3.370370e-03

Joint ci ratio: 1.187756e-01	ci left: 3.644773e-03	ci right 4.108447e-03	k: 1084	n:280000
Cons ci ratio: 2.595022e-01	ci left: 7.087078e-04	ci right 9.232704e-04	k: 227	n:280000
KS ci ratio: 2.549000e-02	ci left: 7.689211e-02	ci right 7.888092e-02	k: 21807	n:280000
MAST1   280000 perm   83 sec   (3359 perm/sec)   p_kst 7.788214e-02   p_cons 8.107143e-04   p_joint 3.871429e-03

Joint ci ratio: 1.258481e-01	ci left: 3.124580e-03	ci right 3.547511e-03	k: 966	n:290000
Cons ci ratio: 2.545269e-01	ci left: 7.133054e-04	ci right 9.244625e-04	k: 236	n:290000
KS ci ratio: 2.504237e-02	ci left: 7.693390e-02	ci right 7.888834e-02	k: 22593	n:290000
MAST1   290000 perm   87 sec   (3320 perm/sec)   p_kst 7.790690e-02   p_cons 8.137931e-04   p_joint 3.331034e-03

Joint ci ratio: 1.345820e-01	ci left: 2.630171e-03	ci right 3.012867e-03	k: 845	n:300000
Cons ci ratio: 2.503369e-01	ci left: 7.145083e-04	ci right 9.219972e-04	k: 244	n:300000
KS ci ratio: 2.461296e-02	ci left: 7.699970e-02	ci right 7.892179e-02	k: 23387	n:300000
MAST1   300000 perm   91 sec   (3281 perm/sec)   p_kst 7.795667e-02   p_cons 8.133333e-04   p_joint 2.816667e-03

Joint ci ratio: 1.324847e-01	ci left: 2.629514e-03	ci right 3.005682e-03	k: 872	n:310000
Cons ci ratio: 2.430057e-01	ci left: 7.368575e-04	ci right 9.436254e-04	k: 259	n:310000
KS ci ratio: 2.423099e-02	ci left: 7.690755e-02	ci right 7.879713e-02	k: 24133	n:310000
MAST1   310000 perm   96 sec   (3245 perm/sec)   p_kst 7.784839e-02   p_cons 8.354839e-04   p_joint 2.812903e-03

Joint ci ratio: 1.299049e-01	ci left: 2.653129e-03	ci right 3.024715e-03	k: 907	n:320000
Cons ci ratio: 2.380218e-01	ci left: 7.461348e-04	ci right 9.505790e-04	k: 270	n:320000
KS ci ratio: 2.386420e-02	ci left: 7.683380e-02	ci right 7.869260e-02	k: 24883	n:320000
MAST1   320000 perm   100 sec   (3208 perm/sec)   p_kst 7.775938e-02   p_cons 8.437500e-04   p_joint 2.834375e-03

Joint ci ratio: 1.307799e-01	ci left: 2.537544e-03	ci right 2.895520e-03	k: 895	n:330000
Cons ci ratio: 2.341650e-01	ci left: 7.491845e-04	ci right 9.506564e-04	k: 279	n:330000
KS ci ratio: 2.349221e-02	ci left: 7.689433e-02	ci right 7.872521e-02	k: 25676	n:330000
MAST1   330000 perm   104 sec   (3170 perm/sec)   p_kst 7.780606e-02   p_cons 8.454545e-04   p_joint 2.712121e-03

Joint ci ratio: 1.309317e-01	ci left: 2.457214e-03	ci right 2.804291e-03	k: 893	n:340000
Cons ci ratio: 2.308900e-01	ci left: 7.493084e-04	ci right 9.475935e-04	k: 287	n:340000
KS ci ratio: 2.316129e-02	ci left: 7.680231e-02	ci right 7.860489e-02	k: 26418	n:340000
MAST1   340000 perm   108 sec   (3135 perm/sec)   p_kst 7.770000e-02   p_cons 8.441176e-04   p_joint 2.626471e-03

Joint ci ratio: 1.370672e-01	ci left: 2.171595e-03	ci right 2.493876e-03	k: 815	n:350000
Cons ci ratio: 2.277487e-01	ci left: 7.494438e-04	ci right 9.446874e-04	k: 295	n:350000
KS ci ratio: 2.282621e-02	ci left: 7.682657e-02	ci right 7.860329e-02	k: 27199	n:350000
MAST1   350000 perm   113 sec   (3100 perm/sec)   p_kst 7.771143e-02   p_cons 8.428571e-04   p_joint 2.328571e-03

Joint ci ratio: 1.358261e-01	ci left: 2.151516e-03	ci right 2.467692e-03	k: 830	n:360000
Cons ci ratio: 2.251030e-01	ci left: 7.469674e-04	ci right 9.389917e-04	k: 302	n:360000
KS ci ratio: 2.251705e-02	ci left: 7.677504e-02	ci right 7.852621e-02	k: 27953	n:360000
MAST1   360000 perm   117 sec   (3065 perm/sec)   p_kst 7.764722e-02   p_cons 8.388889e-04   p_joint 2.305556e-03

Joint ci ratio: 1.336712e-01	ci left: 2.163881e-03	ci right 2.476428e-03	k: 857	n:370000
Cons ci ratio: 2.236331e-01	ci left: 7.369819e-04	ci right 9.250316e-04	k: 306	n:370000
KS ci ratio: 2.221676e-02	ci left: 7.674797e-02	ci right 7.847487e-02	k: 28715	n:370000
MAST1   370000 perm   122 sec   (3031 perm/sec)   p_kst 7.760811e-02   p_cons 8.270270e-04   p_joint 2.316216e-03

Joint ci ratio: 1.322916e-01	ci left: 2.152728e-03	ci right 2.460203e-03	k: 875	n:380000
Cons ci ratio: 2.211267e-01	ci left: 7.349826e-04	ci right 9.201342e-04	k: 313	n:380000
KS ci ratio: 2.192374e-02	ci left: 7.675127e-02	ci right 7.845518e-02	k: 29488	n:380000
MAST1   380000 perm   127 sec   (2998 perm/sec)   p_kst 7.760000e-02   p_cons 8.236842e-04   p_joint 2.302632e-03

Joint ci ratio: 1.307342e-01	ci left: 2.149604e-03	ci right 2.452738e-03	k: 896	n:390000
Cons ci ratio: 2.187027e-01	ci left: 7.330969e-04	ci right 9.154770e-04	k: 320	n:390000
KS ci ratio: 2.164899e-02	ci left: 7.670861e-02	ci right 7.838998e-02	k: 30243	n:390000
MAST1   390000 perm   131 sec   (2969 perm/sec)   p_kst 7.754615e-02   p_cons 8.205128e-04   p_joint 2.297436e-03

Joint ci ratio: 1.299419e-01	ci left: 2.122466e-03	ci right 2.419818e-03	k: 907	n:400000
Cons ci ratio: 2.153733e-01	ci left: 7.384108e-04	ci right 9.189466e-04	k: 330	n:400000
KS ci ratio: 2.137872e-02	ci left: 7.670554e-02	ci right 7.836559e-02	k: 31013	n:400000
MAST1   400000 perm   136 sec   (2939 perm/sec)   p_kst 7.753250e-02   p_cons 8.250000e-04   p_joint 2.267500e-03

Joint ci ratio: 1.286039e-01	ci left: 2.115540e-03	ci right 2.408638e-03	k: 926	n:410000
Cons ci ratio: 2.150506e-01	ci left: 7.227077e-04	ci right 8.991045e-04	k: 331	n:410000
KS ci ratio: 2.111688e-02	ci left: 7.671245e-02	ci right 7.835206e-02	k: 31787	n:410000
MAST1   410000 perm   141 sec   (2910 perm/sec)   p_kst 7.752927e-02   p_cons 8.073171e-04   p_joint 2.258537e-03

Joint ci ratio: 1.272390e-01	ci left: 2.111265e-03	ci right 2.400432e-03	k: 946	n:420000
Cons ci ratio: 2.112654e-01	ci left: 7.325471e-04	ci right 9.077910e-04	k: 343	n:420000
KS ci ratio: 2.086721e-02	ci left: 7.670019e-02	ci right 7.831993e-02	k: 32553	n:420000
MAST1   420000 perm   146 sec   (2878 perm/sec)   p_kst 7.750714e-02   p_cons 8.166667e-04   p_joint 2.252381e-03

Joint ci ratio: 1.250130e-01	ci left: 2.138743e-03	ci right 2.426169e-03	k: 980	n:430000
Cons ci ratio: 2.094473e-01	ci left: 7.287294e-04	ci right 9.013673e-04	k: 349	n:430000
KS ci ratio: 2.063391e-02	ci left: 7.663538e-02	ci right 7.823544e-02	k: 33296	n:430000
MAST1   430000 perm   151 sec   (2849 perm/sec)   p_kst 7.743256e-02   p_cons 8.116279e-04   p_joint 2.279070e-03

Joint ci ratio: 1.238823e-01	ci left: 2.129770e-03	ci right 2.413211e-03	k: 998	n:440000
Cons ci ratio: 2.062309e-01	ci left: 7.358666e-04	ci right 9.071806e-04	k: 360	n:440000
KS ci ratio: 2.037876e-02	ci left: 7.677946e-02	ci right 7.836247e-02	k: 34130	n:440000
MAST1   440000 perm   156 sec   (2820 perm/sec)   p_kst 7.756818e-02   p_cons 8.181818e-04   p_joint 2.268182e-03

Joint ci ratio: 1.225405e-01	ci left: 2.129824e-03	ci right 2.409979e-03	k: 1020	n:450000
Cons ci ratio: 2.048181e-01	ci left: 7.300530e-04	ci right 8.987035e-04	k: 365	n:450000
KS ci ratio: 2.015817e-02	ci left: 7.673808e-02	ci right 7.830292e-02	k: 34883	n:450000
MAST1   450000 perm   161 sec   (2792 perm/sec)   p_kst 7.751778e-02   p_cons 8.111111e-04   p_joint 2.266667e-03

Joint ci ratio: 1.230884e-01	ci left: 2.064555e-03	ci right 2.337428e-03	k: 1011	n:460000
Cons ci ratio: 2.028874e-01	ci left: 7.286229e-04	ci right 8.951597e-04	k: 372	n:460000
KS ci ratio: 1.994337e-02	ci left: 7.670725e-02	ci right 7.825460e-02	k: 35640	n:460000
MAST1   460000 perm   166 sec   (2766 perm/sec)   p_kst 7.747826e-02   p_cons 8.086957e-04   p_joint 2.197826e-03

Joint ci ratio: 1.217129e-01	ci left: 2.068067e-03	ci right 2.338129e-03	k: 1034	n:470000
Cons ci ratio: 2.007461e-01	ci left: 7.292814e-04	ci right 8.939940e-04	k: 380	n:470000
KS ci ratio: 1.973412e-02	ci left: 7.668629e-02	ci right 7.821680e-02	k: 36401	n:470000
MAST1   470000 perm   172 sec   (2740 perm/sec)   p_kst 7.744894e-02   p_cons 8.085106e-04   p_joint 2.200000e-03

Joint ci ratio: 1.203826e-01	ci left: 2.071448e-03	ci right 2.338784e-03	k: 1057	n:480000
Cons ci ratio: 1.984161e-01	ci left: 7.319012e-04	ci right 8.950547e-04	k: 389	n:480000
KS ci ratio: 1.953702e-02	ci left: 7.662480e-02	ci right 7.813864e-02	k: 37142	n:480000
MAST1   480000 perm   177 sec   (2714 perm/sec)   p_kst 7.737917e-02   p_cons 8.104167e-04   p_joint 2.202083e-03

Joint ci ratio: 1.195390e-01	ci left: 2.058866e-03	ci right 2.322586e-03	k: 1072	n:490000
Cons ci ratio: 1.971569e-01	ci left: 7.266630e-04	ci right 8.874973e-04	k: 394	n:490000
KS ci ratio: 1.934018e-02	ci left: 7.660653e-02	ci right 7.810459e-02	k: 37903	n:490000
MAST1   490000 perm   182 sec   (2688 perm/sec)   p_kst 7.735306e-02   p_cons 8.040816e-04   p_joint 2.187755e-03

Joint ci ratio: 1.193190e-01	ci left: 2.025448e-03	ci right 2.284375e-03	k: 1076	n:500000
Cons ci ratio: 1.951902e-01	ci left: 7.273440e-04	ci right 8.865322e-04	k: 402	n:500000
KS ci ratio: 1.914380e-02	ci left: 7.662889e-02	ci right 7.811201e-02	k: 38684	n:500000
MAST1   500000 perm   188 sec   (2663 perm/sec)   p_kst 7.736800e-02   p_cons 8.040000e-04   p_joint 2.152000e-03

Joint ci ratio: 1.180648e-01	ci left: 2.029492e-03	ci right 2.286020e-03	k: 1099	n:510000
Cons ci ratio: 1.930463e-01	ci left: 7.298718e-04	ci right 8.876528e-04	k: 411	n:510000
KS ci ratio: 1.896684e-02	ci left: 7.654893e-02	ci right 7.801666e-02	k: 39413	n:510000
MAST1   510000 perm   193 sec   (2637 perm/sec)   p_kst 7.728039e-02   p_cons 8.058824e-04   p_joint 2.154902e-03

Joint ci ratio: 1.172687e-01	ci left: 2.018460e-03	ci right 2.271753e-03	k: 1114	n:520000
Cons ci ratio: 1.916562e-01	ci left: 7.268186e-04	ci right 8.826761e-04	k: 417	n:520000
KS ci ratio: 1.877948e-02	ci left: 7.658700e-02	ci right 7.804079e-02	k: 40202	n:520000
MAST1   520000 perm   199 sec   (2612 perm/sec)   p_kst 7.731154e-02   p_cons 8.019231e-04   p_joint 2.142308e-03

Joint ci ratio: 1.160264e-01	ci left: 2.024338e-03	ci right 2.275493e-03	k: 1138	n:530000
Cons ci ratio: 1.885240e-01	ci left: 7.382635e-04	ci right 8.936920e-04	k: 431	n:530000
KS ci ratio: 1.861209e-02	ci left: 7.651285e-02	ci right 7.795215e-02	k: 40932	n:530000
MAST1   530000 perm   205 sec   (2588 perm/sec)   p_kst 7.723019e-02   p_cons 8.132075e-04   p_joint 2.147170e-03

Joint ci ratio: 1.151705e-01	ci left: 2.017421e-03	ci right 2.265746e-03	k: 1155	n:540000
Cons ci ratio: 1.872287e-01	ci left: 7.351804e-04	ci right 8.887754e-04	k: 437	n:540000
KS ci ratio: 1.843592e-02	ci left: 7.654293e-02	ci right 7.796902e-02	k: 41717	n:540000
MAST1   540000 perm   210 sec   (2566 perm/sec)   p_kst 7.725370e-02   p_cons 8.092593e-04   p_joint 2.138889e-03

Joint ci ratio: 1.142358e-01	ci left: 2.014295e-03	ci right 2.260087e-03	k: 1174	n:550000
Cons ci ratio: 1.859597e-01	ci left: 7.322129e-04	ci right 8.840341e-04	k: 443	n:550000
KS ci ratio: 1.826908e-02	ci left: 7.653757e-02	ci right 7.795052e-02	k: 42483	n:550000
MAST1   550000 perm   216 sec   (2543 perm/sec)   p_kst 7.724182e-02   p_cons 8.054545e-04   p_joint 2.134545e-03

Joint ci ratio: 1.135142e-01	ci left: 2.004348e-03	ci right 2.247278e-03	k: 1189	n:560000
Cons ci ratio: 1.847161e-01	ci left: 7.293547e-04	ci right 8.794587e-04	k: 449	n:560000
KS ci ratio: 1.811145e-02	ci left: 7.649512e-02	ci right 7.789497e-02	k: 43228	n:560000
MAST1   560000 perm   222 sec   (2520 perm/sec)   p_kst 7.719286e-02   p_cons 8.017857e-04   p_joint 2.123214e-03

Joint ci ratio: 1.142889e-01	ci left: 1.941910e-03	ci right 2.178987e-03	k: 1173	n:570000
Cons ci ratio: 1.807414e-01	ci left: 7.500427e-04	ci right 9.007194e-04	k: 469	n:570000
KS ci ratio: 1.795230e-02	ci left: 7.649789e-02	ci right 7.788536e-02	k: 43998	n:570000
MAST1   570000 perm   228 sec   (2497 perm/sec)   p_kst 7.718947e-02   p_cons 8.228070e-04   p_joint 2.057895e-03

Joint ci ratio: 1.130907e-01	ci left: 1.950307e-03	ci right 2.185746e-03	k: 1198	n:580000
Cons ci ratio: 1.784767e-01	ci left: 7.568707e-04	ci right 9.068083e-04	k: 481	n:580000
KS ci ratio: 1.779577e-02	ci left: 7.651263e-02	ci right 7.788815e-02	k: 44775	n:580000
MAST1   580000 perm   234 sec   (2476 perm/sec)   p_kst 7.719828e-02   p_cons 8.293103e-04   p_joint 2.065517e-03

Joint ci ratio: 1.120671e-01	ci left: 1.953489e-03	ci right 2.187037e-03	k: 1220	n:590000
Cons ci ratio: 1.762951e-01	ci left: 7.634786e-04	ci right 9.126795e-04	k: 493	n:590000
KS ci ratio: 1.764726e-02	ci left: 7.649485e-02	ci right 7.785846e-02	k: 45533	n:590000
MAST1   590000 perm   240 sec   (2456 perm/sec)   p_kst 7.717458e-02   p_cons 8.355932e-04   p_joint 2.067797e-03

Joint ci ratio: 1.112053e-01	ci left: 1.951713e-03	ci right 2.183137e-03	k: 1239	n:600000
Cons ci ratio: 1.740196e-01	ci left: 7.714710e-04	ci right 9.200834e-04	k: 506	n:600000
KS ci ratio: 1.750219e-02	ci left: 7.647937e-02	ci right 7.783138e-02	k: 46292	n:600000
MAST1   600000 perm   246 sec   (2435 perm/sec)   p_kst 7.715333e-02   p_cons 8.433333e-04   p_joint 2.065000e-03

Joint ci ratio: 1.101442e-01	ci left: 1.957973e-03	ci right 2.187780e-03	k: 1263	n:610000
Cons ci ratio: 1.729993e-01	ci left: 7.682328e-04	ci right 9.152630e-04	k: 512	n:610000
KS ci ratio: 1.736325e-02	ci left: 7.644322e-02	ci right 7.778375e-02	k: 47038	n:610000
MAST1   610000 perm   253 sec   (2415 perm/sec)   p_kst 7.711148e-02   p_cons 8.393443e-04   p_joint 2.070492e-03

Joint ci ratio: 1.129097e-01	ci left: 1.830743e-03	ci right 2.051372e-03	k: 1202	n:620000
Cons ci ratio: 1.713372e-01	ci left: 7.712760e-04	ci right 9.173239e-04	k: 522	n:620000
KS ci ratio: 1.722092e-02	ci left: 7.646289e-02	ci right 7.779268e-02	k: 47818	n:620000
MAST1   620000 perm   259 sec   (2395 perm/sec)   p_kst 7.712581e-02   p_cons 8.419355e-04   p_joint 1.938710e-03

Joint ci ratio: 1.296389e-01	ci left: 1.355241e-03	ci right 1.544629e-03	k: 912	n:630000
Cons ci ratio: 1.706863e-01	ci left: 7.651108e-04	ci right 9.093842e-04	k: 526	n:630000
KS ci ratio: 1.708109e-02	ci left: 7.648989e-02	ci right 7.780924e-02	k: 48603	n:630000
MAST1   630000 perm   265 sec   (2376 perm/sec)   p_kst 7.714762e-02   p_cons 8.349206e-04   p_joint 1.447619e-03

Joint ci ratio: 1.286563e-01	ci left: 1.355234e-03	ci right 1.543075e-03	k: 926	n:640000
Cons ci ratio: 1.695641e-01	ci left: 7.636277e-04	ci right 9.065779e-04	k: 533	n:640000
KS ci ratio: 1.695502e-02	ci left: 7.642893e-02	ci right 7.773740e-02	k: 49332	n:640000
MAST1   640000 perm   272 sec   (2356 perm/sec)   p_kst 7.708125e-02   p_cons 8.328125e-04   p_joint 1.446875e-03

Joint ci ratio: 1.282428e-01	ci left: 1.343318e-03	ci right 1.528864e-03	k: 932	n:650000
Cons ci ratio: 1.686197e-01	ci left: 7.607196e-04	ci right 9.022518e-04	k: 539	n:650000
KS ci ratio: 1.681879e-02	ci left: 7.647869e-02	ci right 7.777739e-02	k: 50132	n:650000
MAST1   650000 perm   278 sec   (2337 perm/sec)   p_kst 7.712615e-02   p_cons 8.292308e-04   p_joint 1.433846e-03

Joint ci ratio: 1.272241e-01	ci left: 1.344966e-03	ci right 1.529152e-03	k: 947	n:660000
Cons ci ratio: 1.679992e-01	ci left: 7.549987e-04	ci right 8.948972e-04	k: 543	n:660000
KS ci ratio: 1.668881e-02	ci left: 7.650132e-02	ci right 7.779027e-02	k: 50915	n:660000
MAST1   660000 perm   285 sec   (2319 perm/sec)   p_kst 7.714394e-02   p_cons 8.227273e-04   p_joint 1.434848e-03

Joint ci ratio: 1.262950e-01	ci left: 1.345124e-03	ci right 1.527887e-03	k: 961	n:670000
Cons ci ratio: 1.669288e-01	ci left: 7.537399e-04	ci right 8.924258e-04	k: 550	n:670000
KS ci ratio: 1.656214e-02	ci left: 7.652034e-02	ci right 7.779973e-02	k: 51696	n:670000
MAST1   670000 perm   291 sec   (2300 perm/sec)   p_kst 7.715821e-02   p_cons 8.208955e-04   p_joint 1.434328e-03

Joint ci ratio: 1.256441e-01	ci left: 1.339585e-03	ci right 1.520587e-03	k: 971	n:680000
Cons ci ratio: 1.657301e-01	ci left: 7.539305e-04	ci right 8.915559e-04	k: 558	n:680000
KS ci ratio: 1.644680e-02	ci left: 7.646559e-02	ci right 7.773508e-02	k: 52427	n:680000
MAST1   680000 perm   298 sec   (2282 perm/sec)   p_kst 7.709853e-02   p_cons 8.205882e-04   p_joint 1.427941e-03

Joint ci ratio: 1.193545e-01	ci left: 1.467691e-03	ci right 1.655375e-03	k: 1076	n:690000
Cons ci ratio: 1.644117e-01	ci left: 7.555086e-04	ci right 8.922166e-04	k: 567	n:690000
KS ci ratio: 1.632702e-02	ci left: 7.647165e-02	ci right 7.773190e-02	k: 53199	n:690000
MAST1   690000 perm   305 sec   (2264 perm/sec)   p_kst 7.710000e-02   p_cons 8.217391e-04   p_joint 1.559420e-03

Joint ci ratio: 1.185319e-01	ci left: 1.467515e-03	ci right 1.653792e-03	k: 1091	n:700000
Cons ci ratio: 1.632660e-01	ci left: 7.556756e-04	ci right 8.913674e-04	k: 575	n:700000
KS ci ratio: 1.620705e-02	ci left: 7.650177e-02	ci right 7.775317e-02	k: 53988	n:700000
MAST1   700000 perm   312 sec   (2246 perm/sec)   p_kst 7.712571e-02   p_cons 8.214286e-04   p_joint 1.558571e-03

Joint ci ratio: 1.177795e-01	ci left: 1.465981e-03	ci right 1.650800e-03	k: 1105	n:710000
Cons ci ratio: 1.627025e-01	ci left: 7.504362e-04	ci right 8.846765e-04	k: 579	n:710000
KS ci ratio: 1.609766e-02	ci left: 7.646090e-02	ci right 7.770311e-02	k: 54727	n:710000
MAST1   710000 perm   319 sec   (2229 perm/sec)   p_kst 7.708028e-02   p_cons 8.154930e-04   p_joint 1.556338e-03

Joint ci ratio: 1.217007e-01	ci left: 1.351304e-03	ci right 1.527746e-03	k: 1035	n:720000
Cons ci ratio: 1.618677e-01	ci left: 7.480083e-04	ci right 8.810609e-04	k: 585	n:720000
KS ci ratio: 1.598280e-02	ci left: 7.648901e-02	ci right 7.772273e-02	k: 55515	n:720000
MAST1   720000 perm   326 sec   (2212 perm/sec)   p_kst 7.710417e-02   p_cons 8.125000e-04   p_joint 1.437500e-03

Joint ci ratio: 1.391276e-01	ci left: 1.010715e-03	ci right 1.163152e-03	k: 792	n:730000
Cons ci ratio: 1.605038e-01	ci left: 7.509077e-04	ci right 8.832422e-04	k: 595	n:730000
KS ci ratio: 1.587769e-02	ci left: 7.645086e-02	ci right 7.767578e-02	k: 56255	n:730000
MAST1   730000 perm   333 sec   (2194 perm/sec)   p_kst 7.706164e-02   p_cons 8.150685e-04   p_joint 1.084932e-03

Joint ci ratio: 1.379152e-01	ci left: 1.015320e-03	ci right 1.167007e-03	k: 806	n:740000
Cons ci ratio: 1.595696e-01	ci left: 7.498409e-04	ci right 8.811445e-04	k: 602	n:740000
KS ci ratio: 1.577704e-02	ci left: 7.639223e-02	ci right 7.760838e-02	k: 56979	n:740000
MAST1   740000 perm   340 sec   (2177 perm/sec)   p_kst 7.699865e-02   p_cons 8.135135e-04   p_joint 1.089189e-03

Joint ci ratio: 1.369847e-01	ci left: 1.015945e-03	ci right 1.166618e-03	k: 817	n:750000
Cons ci ratio: 1.586515e-01	ci left: 7.488047e-04	ci right 8.791006e-04	k: 609	n:750000
KS ci ratio: 1.565976e-02	ci left: 7.650258e-02	ci right 7.771135e-02	k: 57829	n:750000
MAST1   750000 perm   347 sec   (2161 perm/sec)   p_kst 7.710533e-02   p_cons 8.120000e-04   p_joint 1.089333e-03

Joint ci ratio: 1.365685e-01	ci left: 1.008931e-03	ci right 1.158072e-03	k: 822	n:760000
Cons ci ratio: 1.578772e-01	ci left: 7.465340e-04	ci right 8.757408e-04	k: 615	n:760000
KS ci ratio: 1.555741e-02	ci left: 7.649731e-02	ci right 7.769803e-02	k: 58593	n:760000
MAST1   760000 perm   354 sec   (2144 perm/sec)   p_kst 7.709605e-02   p_cons 8.092105e-04   p_joint 1.081579e-03

Joint ci ratio: 1.358280e-01	ci left: 1.007118e-03	ci right 1.155119e-03	k: 831	n:770000
Cons ci ratio: 1.569878e-01	ci left: 7.455715e-04	ci right 8.738163e-04	k: 622	n:770000
KS ci ratio: 1.545041e-02	ci left: 7.655301e-02	ci right 7.774627e-02	k: 59404	n:770000
MAST1   770000 perm   362 sec   (2128 perm/sec)   p_kst 7.714805e-02   p_cons 8.077922e-04   p_joint 1.079221e-03

Joint ci ratio: 1.348589e-01	ci left: 1.009070e-03	ci right 1.156215e-03	k: 843	n:780000
Cons ci ratio: 1.557427e-01	ci left: 7.483319e-04	ci right 8.759352e-04	k: 632	n:780000
KS ci ratio: 1.535430e-02	ci left: 7.652684e-02	ci right 7.771220e-02	k: 60152	n:780000
MAST1   780000 perm   369 sec   (2113 perm/sec)   p_kst 7.711795e-02   p_cons 8.102564e-04   p_joint 1.080769e-03

Joint ci ratio: 1.299433e-01	ci left: 1.075853e-03	ci right 1.226577e-03	k: 908	n:790000
Cons ci ratio: 1.547678e-01	ci left: 7.485925e-04	ci right 8.753671e-04	k: 640	n:790000
KS ci ratio: 1.525168e-02	ci left: 7.657829e-02	ci right 7.775646e-02	k: 60961	n:790000
MAST1   790000 perm   377 sec   (2097 perm/sec)   p_kst 7.716582e-02   p_cons 8.101266e-04   p_joint 1.149367e-03

Joint ci ratio: 1.291642e-01	ci left: 1.075709e-03	ci right 1.225441e-03	k: 919	n:800000
Cons ci ratio: 1.542875e-01	ci left: 7.440416e-04	ci right 8.696184e-04	k: 644	n:800000
KS ci ratio: 1.515575e-02	ci left: 7.658489e-02	ci right 7.775568e-02	k: 61735	n:800000
MAST1   800000 perm   384 sec   (2081 perm/sec)   p_kst 7.716875e-02   p_cons 8.050000e-04   p_joint 1.148750e-03

Joint ci ratio: 1.283299e-01	ci left: 1.076767e-03	ci right 1.225603e-03	k: 931	n:810000
Cons ci ratio: 1.524080e-01	ci left: 7.538514e-04	ci right 8.793924e-04	k: 660	n:810000
KS ci ratio: 1.506814e-02	ci left: 7.652983e-02	ci right 7.769295e-02	k: 62459	n:810000
MAST1   810000 perm   392 sec   (2065 perm/sec)   p_kst 7.710988e-02   p_cons 8.148148e-04   p_joint 1.149383e-03

Joint ci ratio: 1.274440e-01	ci left: 1.078982e-03	ci right 1.227017e-03	k: 944	n:820000
Cons ci ratio: 1.513808e-01	ci left: 7.552165e-04	ci right 8.800605e-04	k: 669	n:820000
KS ci ratio: 1.497933e-02	ci left: 7.650165e-02	ci right 7.765744e-02	k: 63204	n:820000
MAST1   820000 perm   400 sec   (2051 perm/sec)   p_kst 7.707805e-02   p_cons 8.158537e-04   p_joint 1.151220e-03

Joint ci ratio: 1.090569e-01	ci left: 1.469439e-03	ci right 1.640094e-03	k: 1289	n:830000
Cons ci ratio: 1.492780e-01	ci left: 7.681485e-04	ci right 8.932089e-04	k: 688	n:830000
KS ci ratio: 1.489169e-02	ci left: 7.647778e-02	ci right 7.762638e-02	k: 63952	n:830000
MAST1   830000 perm   408 sec   (2036 perm/sec)   p_kst 7.705060e-02   p_cons 8.289157e-04   p_joint 1.553012e-03

Joint ci ratio: 1.087208e-01	ci left: 1.461210e-03	ci right 1.630353e-03	k: 1297	n:840000
Cons ci ratio: 1.482062e-01	ci left: 7.704656e-04	ci right 8.949229e-04	k: 698	n:840000
KS ci ratio: 1.480806e-02	ci left: 7.643076e-02	ci right 7.757216e-02	k: 64680	n:840000
MAST1   840000 perm   415 sec   (2022 perm/sec)   p_kst 7.700000e-02   p_cons 8.309524e-04   p_joint 1.544048e-03

Joint ci ratio: 1.234564e-01	ci left: 1.111554e-03	ci right 1.258938e-03	k: 1006	n:850000
Cons ci ratio: 1.477844e-01	ci left: 7.659328e-04	ci right 8.892746e-04	k: 702	n:850000
KS ci ratio: 1.471594e-02	ci left: 7.647984e-02	ci right 7.761481e-02	k: 65489	n:850000
MAST1   850000 perm   423 sec   (2008 perm/sec)   p_kst 7.704588e-02   p_cons 8.258824e-04   p_joint 1.183529e-03

Joint ci ratio: 1.227877e-01	ci left: 1.111026e-03	ci right 1.257484e-03	k: 1017	n:860000
Cons ci ratio: 1.469506e-01	ci left: 7.659859e-04	ci right 8.885792e-04	k: 710	n:860000
KS ci ratio: 1.463007e-02	ci left: 7.648376e-02	ci right 7.761211e-02	k: 66260	n:860000
MAST1   860000 perm   431 sec   (1994 perm/sec)   p_kst 7.704651e-02   p_cons 8.255814e-04   p_joint 1.182558e-03

Joint ci ratio: 1.281287e-01	ci left: 1.005842e-03	ci right 1.144641e-03	k: 934	n:870000
Cons ci ratio: 1.460292e-01	ci left: 7.671472e-04	ci right 8.890894e-04	k: 719	n:870000
KS ci ratio: 1.454534e-02	ci left: 7.649105e-02	ci right 7.761292e-02	k: 67034	n:870000
MAST1   870000 perm   439 sec   (1981 perm/sec)   p_kst 7.705057e-02   p_cons 8.264368e-04   p_joint 1.073563e-03

Joint ci ratio: 1.273816e-01	ci left: 1.006513e-03	ci right 1.144533e-03	k: 945	n:880000
Cons ci ratio: 1.446294e-01	ci left: 7.737604e-04	ci right 8.954730e-04	k: 733	n:880000
KS ci ratio: 1.446772e-02	ci left: 7.644269e-02	ci right 7.755782e-02	k: 67759	n:880000
MAST1   880000 perm   447 sec   (1967 perm/sec)   p_kst 7.699886e-02   p_cons 8.329545e-04   p_joint 1.073864e-03

Joint ci ratio: 1.266474e-01	ci left: 1.007170e-03	ci right 1.144425e-03	k: 956	n:890000
Cons ci ratio: 1.437507e-01	ci left: 7.748141e-04	ci right 8.958884e-04	k: 742	n:890000
KS ci ratio: 1.438757e-02	ci left: 7.643240e-02	ci right 7.754114e-02	k: 68517	n:890000
MAST1   890000 perm   456 sec   (1954 perm/sec)   p_kst 7.698539e-02   p_cons 8.337079e-04   p_joint 1.074157e-03

Joint ci ratio: 1.258607e-01	ci left: 1.008892e-03	ci right 1.145463e-03	k: 968	n:900000
Cons ci ratio: 1.428879e-01	ci left: 7.758465e-04	ci right 8.962924e-04	k: 751	n:900000
KS ci ratio: 1.430271e-02	ci left: 7.648215e-02	ci right 7.758502e-02	k: 69329	n:900000
MAST1   900000 perm   464 sec   (1940 perm/sec)   p_kst 7.703222e-02   p_cons 8.344444e-04   p_joint 1.075556e-03

Joint ci ratio: 1.250246e-01	ci left: 1.011643e-03	ci right 1.147609e-03	k: 981	n:910000
Cons ci ratio: 1.422276e-01	ci left: 7.747386e-04	ci right 8.944096e-04	k: 758	n:910000
KS ci ratio: 1.421977e-02	ci left: 7.652644e-02	ci right 7.762350e-02	k: 70137	n:910000
MAST1   910000 perm   472 sec   (1927 perm/sec)   p_kst 7.707363e-02   p_cons 8.329670e-04   p_joint 1.078022e-03

Joint ci ratio: 1.054054e-01	ci left: 1.421949e-03	ci right 1.581216e-03	k: 1380	n:920000
Cons ci ratio: 1.414839e-01	ci left: 7.747046e-04	ci right 8.936918e-04	k: 766	n:920000
KS ci ratio: 1.414679e-02	ci left: 7.648420e-02	ci right 7.757498e-02	k: 70866	n:920000
MAST1   920000 perm   481 sec   (1914 perm/sec)   p_kst 7.702826e-02   p_cons 8.326087e-04   p_joint 1.500000e-03

Joint ci ratio: 1.048000e-01	ci left: 1.423411e-03	ci right 1.581870e-03	k: 1396	n:930000
Cons ci ratio: 1.407518e-01	ci left: 7.746728e-04	ci right 8.929879e-04	k: 774	n:930000
KS ci ratio: 1.407247e-02	ci left: 7.646754e-02	ci right 7.755230e-02	k: 71618	n:930000
MAST1   930000 perm   489 sec   (1902 perm/sec)   p_kst 7.700860e-02   p_cons 8.322581e-04   p_joint 1.501075e-03

Joint ci ratio: 1.195461e-01	ci left: 1.074238e-03	ci right 1.211844e-03	k: 1073	n:940000
Cons ci ratio: 1.402103e-01	ci left: 7.725902e-04	ci right 8.900953e-04	k: 780	n:940000
KS ci ratio: 1.399921e-02	ci left: 7.645230e-02	ci right 7.753116e-02	k: 72371	n:940000
MAST1   940000 perm   497 sec   (1890 perm/sec)   p_kst 7.699043e-02   p_cons 8.297872e-04   p_joint 1.141489e-03

Joint ci ratio: 1.545373e-01	ci left: 6.245344e-04	ci right 7.301275e-04	k: 642	n:950000
Cons ci ratio: 2.204804e-01	ci left: 2.959743e-04	ci right 3.702858e-04	k: 315	n:950000
KS ci ratio: 1.392563e-02	ci left: 7.645209e-02	ci right 7.752523e-02	k: 73138	n:950000
MAST1   950000 perm   506 sec   (1877 perm/sec)   p_kst 7.698737e-02   p_cons 3.315789e-04   p_joint 6.757895e-04

Joint ci ratio: 1.829261e-01	ci left: 4.343944e-04	ci right 5.228316e-04	k: 458	n:960000
Cons ci ratio: 2.197862e-01	ci left: 2.948597e-04	ci right 3.686267e-04	k: 317	n:960000
KS ci ratio: 1.385808e-02	ci left: 7.640206e-02	ci right 7.746925e-02	k: 73857	n:960000
MAST1   960000 perm   515 sec   (1864 perm/sec)   p_kst 7.693437e-02   p_cons 3.302083e-04   p_joint 4.770833e-04

Joint ci ratio: 1.503831e-01	ci left: 6.473558e-04	ci right 7.536005e-04	k: 678	n:970000
Cons ci ratio: 2.180782e-01	ci left: 2.966919e-04	ci right 3.702633e-04	k: 322	n:970000
KS ci ratio: 1.378680e-02	ci left: 7.640137e-02	ci right 7.746302e-02	k: 74623	n:970000
MAST1   970000 perm   524 sec   (1852 perm/sec)   p_kst 7.693093e-02   p_cons 3.319588e-04   p_joint 6.989691e-04

Joint ci ratio: 1.509407e-01	ci left: 6.358402e-04	ci right 7.406168e-04	k: 673	n:980000
Cons ci ratio: 2.167402e-01	ci left: 2.975238e-04	ci right 3.707886e-04	k: 326	n:980000
KS ci ratio: 1.371680e-02	ci left: 7.639867e-02	ci right 7.745485e-02	k: 75387	n:980000
MAST1   980000 perm   533 sec   (1840 perm/sec)   p_kst 7.692551e-02   p_cons 3.326531e-04   p_joint 6.867347e-04

Joint ci ratio: 1.500528e-01	ci left: 6.371941e-04	ci right 7.415207e-04	k: 681	n:990000
Cons ci ratio: 2.167406e-01	ci left: 2.945185e-04	ci right 3.670433e-04	k: 326	n:990000
KS ci ratio: 1.364631e-02	ci left: 7.641215e-02	ci right 7.746305e-02	k: 76167	n:990000
MAST1   990000 perm   542 sec   (1828 perm/sec)   p_kst 7.693636e-02   p_cons 3.292929e-04   p_joint 6.878788e-04

Joint ci ratio: 1.492886e-01	ci left: 6.375600e-04	ci right 7.413674e-04	k: 688	n:1000000
Cons ci ratio: 2.154269e-01	ci left: 2.953569e-04	ci right 3.675890e-04	k: 330	n:1000000
KS ci ratio: 1.357737e-02	ci left: 7.642040e-02	ci right 7.746606e-02	k: 76942	n:1000000
MAST1   1000000 perm   550 sec   (1817 perm/sec)   p_kst 7.694200e-02   p_cons 3.300000e-04   p_joint 6.880000e-04

Joint ci ratio: 1.783234e-01	ci left: 4.355780e-04	ci right 5.217842e-04	k: 482	n:1010000
Cons ci ratio: 2.151025e-01	ci left: 2.933692e-04	ci right 3.649930e-04	k: 331	n:1010000
KS ci ratio: 1.351012e-02	ci left: 7.642158e-02	ci right 7.746204e-02	k: 77710	n:1010000
MAST1   1010000 perm   559 sec   (1806 perm/sec)   p_kst 7.694059e-02   p_cons 3.277228e-04   p_joint 4.772277e-04

Joint ci ratio: 1.775897e-01	ci left: 4.350545e-04	ci right 5.207648e-04	k: 486	n:1020000
Cons ci ratio: 2.144576e-01	ci left: 2.923484e-04	ci right 3.634807e-04	k: 333	n:1020000
KS ci ratio: 1.344294e-02	ci left: 7.643253e-02	ci right 7.746792e-02	k: 78488	n:1020000
MAST1   1020000 perm   568 sec   (1794 perm/sec)   p_kst 7.694902e-02   p_cons 3.264706e-04   p_joint 4.764706e-04

Joint ci ratio: 1.472719e-01	ci left: 6.367525e-04	ci right 7.389047e-04	k: 707	n:1030000
Cons ci ratio: 2.135010e-01	ci left: 2.922666e-04	ci right 3.630203e-04	k: 336	n:1030000
KS ci ratio: 1.337090e-02	ci left: 7.650522e-02	ci right 7.753600e-02	k: 79330	n:1030000
MAST1   1030000 perm   578 sec   (1782 perm/sec)   p_kst 7.701942e-02   p_cons 3.262136e-04   p_joint 6.864078e-04

Joint ci ratio: 1.467548e-01	ci left: 6.352607e-04	ci right 7.367843e-04	k: 712	n:1040000
Cons ci ratio: 2.128704e-01	ci left: 2.912767e-04	ci right 3.615553e-04	k: 338	n:1040000
KS ci ratio: 1.330639e-02	ci left: 7.650847e-02	ci right 7.753428e-02	k: 80101	n:1040000
MAST1   1040000 perm   587 sec   (1771 perm/sec)   p_kst 7.702019e-02   p_cons 3.250000e-04   p_joint 6.846154e-04

Joint ci ratio: 1.463450e-01	ci left: 6.328804e-04	ci right 7.337165e-04	k: 716	n:1050000
Cons ci ratio: 2.116254e-01	ci left: 2.921097e-04	ci right 3.621236e-04	k: 342	n:1050000
KS ci ratio: 1.324289e-02	ci left: 7.651071e-02	ci right 7.753162e-02	k: 80871	n:1050000
MAST1   1050000 perm   597 sec   (1760 perm/sec)   p_kst 7.702000e-02   p_cons 3.257143e-04   p_joint 6.819048e-04

Joint ci ratio: 1.452349e-01	ci left: 6.369087e-04	ci right 7.375502e-04	k: 727	n:1060000
Cons ci ratio: 2.097981e-01	ci left: 2.947157e-04	ci right 3.646659e-04	k: 348	n:1060000
KS ci ratio: 1.317828e-02	ci left: 7.653456e-02	ci right 7.755077e-02	k: 81664	n:1060000
MAST1   1060000 perm   606 sec   (1749 perm/sec)   p_kst 7.704151e-02   p_cons 3.283019e-04   p_joint 6.858491e-04

Joint ci ratio: 1.447388e-01	ci left: 6.354597e-04	ci right 7.354995e-04	k: 732	n:1070000
Cons ci ratio: 2.094984e-01	ci left: 2.928468e-04	ci right 3.622414e-04	k: 349	n:1070000
KS ci ratio: 1.311745e-02	ci left: 7.652723e-02	ci right 7.753861e-02	k: 82424	n:1070000
MAST1   1070000 perm   615 sec   (1739 perm/sec)   p_kst 7.703178e-02   p_cons 3.261682e-04   p_joint 6.841121e-04

Joint ci ratio: 1.436646e-01	ci left: 6.393936e-04	ci right 7.392416e-04	k: 743	n:1080000
Cons ci ratio: 2.086064e-01	ci left: 2.927676e-04	ci right 3.618104e-04	k: 352	n:1080000
KS ci ratio: 1.305695e-02	ci left: 7.652558e-02	ci right 7.753224e-02	k: 83190	n:1080000
MAST1   1080000 perm   625 sec   (1729 perm/sec)   p_kst 7.702778e-02   p_cons 3.259259e-04   p_joint 6.879630e-04

Joint ci ratio: 1.426139e-01	ci left: 6.432580e-04	ci right 7.429124e-04	k: 754	n:1090000
Cons ci ratio: 2.074343e-01	ci left: 2.935603e-04	ci right 3.623516e-04	k: 356	n:1090000
KS ci ratio: 1.299871e-02	ci left: 7.650842e-02	ci right 7.751034e-02	k: 83939	n:1090000
MAST1   1090000 perm   634 sec   (1718 perm/sec)   p_kst 7.700826e-02   p_cons 3.266055e-04   p_joint 6.917431e-04

Joint ci ratio: 1.419574e-01	ci left: 6.435473e-04	ci right 7.427487e-04	k: 761	n:1100000
Cons ci ratio: 2.062818e-01	ci left: 2.943396e-04	ci right 3.628819e-04	k: 360	n:1100000
KS ci ratio: 1.294032e-02	ci left: 7.650156e-02	ci right 7.749885e-02	k: 84699	n:1100000
MAST1   1100000 perm   644 sec   (1708 perm/sec)   p_kst 7.699909e-02   p_cons 3.272727e-04   p_joint 6.918182e-04

Joint ci ratio: 1.414018e-01	ci left: 6.429634e-04	ci right 7.416542e-04	k: 767	n:1110000
Cons ci ratio: 2.057129e-01	ci left: 2.933967e-04	ci right 3.615074e-04	k: 362	n:1110000
KS ci ratio: 1.288402e-02	ci left: 7.648046e-02	ci right 7.747310e-02	k: 85443	n:1110000
MAST1   1110000 perm   654 sec   (1697 perm/sec)   p_kst 7.697568e-02   p_cons 3.261261e-04   p_joint 6.909910e-04

Joint ci ratio: 1.410352e-01	ci left: 6.406678e-04	ci right 7.387298e-04	k: 771	n:1120000
Cons ci ratio: 2.048681e-01	ci left: 2.933180e-04	ci right 3.610957e-04	k: 365	n:1120000
KS ci ratio: 1.282458e-02	ci left: 7.650247e-02	ci right 7.749079e-02	k: 86235	n:1120000
MAST1   1120000 perm   664 sec   (1687 perm/sec)   p_kst 7.699554e-02   p_cons 3.258929e-04   p_joint 6.883929e-04

Joint ci ratio: 1.404904e-01	ci left: 6.401209e-04	ci right 7.376890e-04	k: 777	n:1130000
Cons ci ratio: 2.043108e-01	ci left: 2.924014e-04	ci right 3.597606e-04	k: 367	n:1130000
KS ci ratio: 1.276842e-02	ci left: 7.649675e-02	ci right 7.748064e-02	k: 86996	n:1130000
MAST1   1130000 perm   673 sec   (1678 perm/sec)   p_kst 7.698761e-02   p_cons 3.247788e-04   p_joint 6.876106e-04

Joint ci ratio: 1.400412e-01	ci left: 6.387378e-04	ci right 7.357579e-04	k: 782	n:1140000
Cons ci ratio: 2.037579e-01	ci left: 2.915013e-04	ci right 3.584488e-04	k: 369	n:1140000
KS ci ratio: 1.271221e-02	ci left: 7.649989e-02	ci right 7.747945e-02	k: 87767	n:1140000
MAST1   1140000 perm   683 sec   (1668 perm/sec)   p_kst 7.698860e-02   p_cons 3.236842e-04   p_joint 6.859649e-04

Joint ci ratio: 1.395963e-01	ci left: 6.373793e-04	ci right 7.338599e-04	k: 787	n:1150000
Cons ci ratio: 2.032096e-01	ci left: 2.906170e-04	ci right 3.571595e-04	k: 371	n:1150000
KS ci ratio: 1.265310e-02	ci left: 7.654373e-02	ci right 7.751927e-02	k: 88585	n:1150000
MAST1   1150000 perm   693 sec   (1658 perm/sec)   p_kst 7.703043e-02   p_cons 3.226087e-04   p_joint 6.843478e-04

Joint ci ratio: 1.386318e-01	ci left: 6.410375e-04	ci right 7.373460e-04	k: 798	n:1160000
Cons ci ratio: 2.010587e-01	ci left: 2.946592e-04	ci right 3.613255e-04	k: 379	n:1160000
KS ci ratio: 1.259946e-02	ci left: 7.653440e-02	ci right 7.750565e-02	k: 89342	n:1160000
MAST1   1160000 perm   704 sec   (1649 perm/sec)   p_kst 7.701897e-02   p_cons 3.267241e-04   p_joint 6.879310e-04

Joint ci ratio: 1.380285e-01	ci left: 6.413344e-04	ci right 7.372337e-04	k: 805	n:1170000
Cons ci ratio: 2.000087e-01	ci left: 2.953879e-04	ci right 3.618275e-04	k: 383	n:1170000
KS ci ratio: 1.254778e-02	ci left: 7.651074e-02	ci right 7.747768e-02	k: 90082	n:1170000
MAST1   1170000 perm   714 sec   (1639 perm/sec)   p_kst 7.699316e-02   p_cons 3.273504e-04   p_joint 6.880342e-04

Joint ci ratio: 1.376874e-01	ci left: 6.391722e-04	ci right 7.344927e-04	k: 809	n:1180000
Cons ci ratio: 1.997490e-01	ci left: 2.936897e-04	ci right 3.596510e-04	k: 384	n:1180000
KS ci ratio: 1.249762e-02	ci left: 7.647735e-02	ci right 7.743998e-02	k: 90810	n:1180000
MAST1   1180000 perm   724 sec   (1629 perm/sec)   p_kst 7.695763e-02   p_cons 3.254237e-04   p_joint 6.855932e-04

Joint ci ratio: 1.371803e-01	ci left: 6.386697e-04	ci right 7.335358e-04	k: 815	n:1190000
Cons ci ratio: 1.982103e-01	ci left: 2.960125e-04	ci right 3.619216e-04	k: 390	n:1190000
KS ci ratio: 1.244269e-02	ci left: 7.650571e-02	ci right 7.746442e-02	k: 91611	n:1190000
MAST1   1190000 perm   735 sec   (1620 perm/sec)   p_kst 7.698403e-02   p_cons 3.277311e-04   p_joint 6.848739e-04

Joint ci ratio: 1.365127e-01	ci left: 6.397859e-04	ci right 7.343177e-04	k: 823	n:1200000
Cons ci ratio: 1.977054e-01	ci left: 2.951298e-04	ci right 3.606548e-04	k: 392	n:1200000
KS ci ratio: 1.238883e-02	ci left: 7.652944e-02	ci right 7.748427e-02	k: 92407	n:1200000
MAST1   1200000 perm   745 sec   (1611 perm/sec)   p_kst 7.700583e-02   p_cons 3.266667e-04   p_joint 6.858333e-04

Joint ci ratio: 1.355291e-01	ci left: 6.440783e-04	ci right 7.385035e-04	k: 835	n:1210000
Cons ci ratio: 1.969551e-01	ci left: 2.950476e-04	ci right 3.602758e-04	k: 395	n:1210000
KS ci ratio: 1.233646e-02	ci left: 7.654372e-02	ci right 7.749467e-02	k: 93192	n:1210000
MAST1   1210000 perm   755 sec   (1602 perm/sec)   p_kst 7.701818e-02   p_cons 3.264463e-04   p_joint 6.900826e-04

Joint ci ratio: 1.351258e-01	ci left: 6.427586e-04	ci right 7.366872e-04	k: 840	n:1220000
Cons ci ratio: 1.962133e-01	ci left: 2.949671e-04	ci right 3.599026e-04	k: 398	n:1220000
KS ci ratio: 1.228433e-02	ci left: 7.656268e-02	ci right 7.750982e-02	k: 93983	n:1220000
MAST1   1220000 perm   766 sec   (1593 perm/sec)   p_kst 7.703525e-02   p_cons 3.262295e-04   p_joint 6.885246e-04

Joint ci ratio: 1.348057e-01	ci left: 6.406751e-04	ci right 7.340598e-04	k: 844	n:1230000
Cons ci ratio: 1.962135e-01	ci left: 2.925690e-04	ci right 3.569767e-04	k: 398	n:1230000
KS ci ratio: 1.223578e-02	ci left: 7.654729e-02	ci right 7.749047e-02	k: 94732	n:1230000
MAST1   1230000 perm   776 sec   (1584 perm/sec)   p_kst 7.701789e-02   p_cons 3.235772e-04   p_joint 6.861789e-04

Joint ci ratio: 1.343297e-01	ci left: 6.401842e-04	ci right 7.331414e-04	k: 850	n:1240000
Cons ci ratio: 1.954801e-01	ci left: 2.925103e-04	ci right 3.566357e-04	k: 401	n:1240000
KS ci ratio: 1.218387e-02	ci left: 7.657800e-02	ci right 7.751752e-02	k: 95538	n:1240000
MAST1   1240000 perm   787 sec   (1576 perm/sec)   p_kst 7.704677e-02   p_cons 3.233871e-04   p_joint 6.854839e-04

Joint ci ratio: 1.336248e-01	ci left: 6.420214e-04	ci right 7.347174e-04	k: 859	n:1250000
Cons ci ratio: 1.942755e-01	ci left: 2.939751e-04	ci right 3.579775e-04	k: 406	n:1250000
KS ci ratio: 1.213302e-02	ci left: 7.660344e-02	ci right 7.753932e-02	k: 96338	n:1250000
MAST1   1250000 perm   797 sec   (1568 perm/sec)   p_kst 7.707040e-02   p_cons 3.248000e-04   p_joint 6.872000e-04

Joint ci ratio: 1.332382e-01	ci left: 6.407618e-04	ci right 7.329870e-04	k: 864	n:1260000
Cons ci ratio: 1.938000e-01	ci left: 2.931521e-04	ci right 3.568007e-04	k: 408	n:1260000
KS ci ratio: 1.208341e-02	ci left: 7.662136e-02	ci right 7.755361e-02	k: 97129	n:1260000
MAST1   1260000 perm   808 sec   (1559 perm/sec)   p_kst 7.708651e-02   p_cons 3.238095e-04   p_joint 6.857143e-04

Joint ci ratio: 1.327023e-01	ci left: 6.410449e-04	ci right 7.329105e-04	k: 871	n:1270000
Cons ci ratio: 1.926260e-01	ci left: 2.945904e-04	ci right 3.581184e-04	k: 413	n:1270000
KS ci ratio: 1.203733e-02	ci left: 7.660445e-02	ci right 7.753291e-02	k: 97876	n:1270000
MAST1   1270000 perm   819 sec   (1551 perm/sec)   p_kst 7.706772e-02   p_cons 3.251969e-04   p_joint 6.858268e-04

Joint ci ratio: 1.319477e-01	ci left: 6.435906e-04	ci right 7.352556e-04	k: 881	n:1280000
Cons ci ratio: 1.914731e-01	ci left: 2.960074e-04	ci right 3.594145e-04	k: 418	n:1280000
KS ci ratio: 1.198875e-02	ci left: 7.662365e-02	ci right 7.754858e-02	k: 98669	n:1280000
MAST1   1280000 perm   830 sec   (1543 perm/sec)   p_kst 7.708516e-02   p_cons 3.265625e-04   p_joint 6.882812e-04

Joint ci ratio: 1.316497e-01	ci left: 6.416001e-04	ci right 7.327589e-04	k: 885	n:1290000
Cons ci ratio: 1.914734e-01	ci left: 2.937127e-04	ci right 3.566283e-04	k: 418	n:1290000
KS ci ratio: 1.194303e-02	ci left: 7.661551e-02	ci right 7.753678e-02	k: 99427	n:1290000
MAST1   1290000 perm   840 sec   (1535 perm/sec)   p_kst 7.707519e-02   p_cons 3.240310e-04   p_joint 6.860465e-04

Joint ci ratio: 1.312062e-01	ci left: 6.411283e-04	ci right 7.318894e-04	k: 891	n:1300000
Cons ci ratio: 1.907916e-01	ci left: 2.936507e-04	ci right 3.563030e-04	k: 421	n:1300000
KS ci ratio: 1.189532e-02	ci left: 7.663741e-02	ci right 7.755524e-02	k: 100224	n:1300000
MAST1   1300000 perm   851 sec   (1527 perm/sec)   p_kst 7.709538e-02   p_cons 3.238462e-04   p_joint 6.853846e-04

Joint ci ratio: 1.305492e-01	ci left: 6.428795e-04	ci right 7.333974e-04	k: 900	n:1310000
Cons ci ratio: 1.901170e-01	ci left: 2.935900e-04	ci right 3.559823e-04	k: 424	n:1310000
KS ci ratio: 1.184837e-02	ci left: 7.665671e-02	ci right 7.757112e-02	k: 101018	n:1310000
MAST1   1310000 perm   862 sec   (1519 perm/sec)   p_kst 7.711298e-02   p_cons 3.236641e-04   p_joint 6.870229e-04

Joint ci ratio: 1.303326e-01	ci left: 6.402077e-04	ci right 7.301883e-04	k: 903	n:1320000
Cons ci ratio: 1.896713e-01	ci left: 2.928089e-04	ci right 3.548726e-04	k: 426	n:1320000
KS ci ratio: 1.180259e-02	ci left: 7.666816e-02	ci right 7.757915e-02	k: 101802	n:1320000
MAST1   1320000 perm   873 sec   (1511 perm/sec)   p_kst 7.712273e-02   p_cons 3.227273e-04   p_joint 6.840909e-04

Joint ci ratio: 1.311337e-01	ci left: 6.273937e-04	ci right 7.161575e-04	k: 892	n:1330000
Cons ci ratio: 1.890086e-01	ci left: 2.927561e-04	ci right 3.545668e-04	k: 429	n:1330000
KS ci ratio: 1.175741e-02	ci left: 7.667870e-02	ci right 7.758630e-02	k: 102585	n:1330000
MAST1   1330000 perm   885 sec   (1504 perm/sec)   p_kst 7.713158e-02   p_cons 3.225564e-04   p_joint 6.706767e-04

Joint ci ratio: 1.303332e-01	ci left: 6.306522e-04	ci right 7.192902e-04	k: 903	n:1340000
Cons ci ratio: 1.881355e-01	ci left: 2.934155e-04	ci right 3.550466e-04	k: 433	n:1340000
KS ci ratio: 1.171728e-02	ci left: 7.663401e-02	ci right 7.753797e-02	k: 103294	n:1340000
MAST1   1340000 perm   896 sec   (1496 perm/sec)   p_kst 7.708507e-02   p_cons 3.231343e-04   p_joint 6.738806e-04

Joint ci ratio: 1.301177e-01	ci left: 6.281305e-04	ci right 7.162568e-04	k: 906	n:1350000
Cons ci ratio: 1.881357e-01	ci left: 2.912420e-04	ci right 3.524167e-04	k: 433	n:1350000
KS ci ratio: 1.167599e-02	ci left: 7.660919e-02	ci right 7.750966e-02	k: 104029	n:1350000
MAST1   1350000 perm   907 sec   (1488 perm/sec)   p_kst 7.705852e-02   p_cons 3.207407e-04   p_joint 6.711111e-04

Joint ci ratio: 1.589414e-01	ci left: 4.115259e-04	ci right 4.832765e-04	k: 607	n:1360000
Cons ci ratio: 1.881359e-01	ci left: 2.891005e-04	ci right 3.498254e-04	k: 433	n:1360000
KS ci ratio: 1.163356e-02	ci left: 7.660382e-02	ci right 7.750093e-02	k: 104790	n:1360000
MAST1   1360000 perm   919 sec   (1481 perm/sec)   p_kst 7.705147e-02   p_cons 3.183824e-04   p_joint 4.463235e-04

Joint ci ratio: 1.586808e-01	ci left: 4.099239e-04	ci right 4.812668e-04	k: 609	n:1370000
Cons ci ratio: 1.874891e-01	ci left: 2.890771e-04	ci right 3.495645e-04	k: 436	n:1370000
KS ci ratio: 1.159177e-02	ci left: 7.659634e-02	ci right 7.749012e-02	k: 105548	n:1370000
MAST1   1370000 perm   931 sec   (1472 perm/sec)   p_kst 7.704234e-02   p_cons 3.182482e-04   p_joint 4.445255e-04

Joint ci ratio: 1.577779e-01	ci left: 4.118250e-04	ci right 4.830525e-04	k: 616	n:1380000
Cons ci ratio: 1.866368e-01	ci left: 2.897452e-04	ci right 3.500656e-04	k: 440	n:1380000
KS ci ratio: 1.154854e-02	ci left: 7.661211e-02	ci right 7.750271e-02	k: 106338	n:1380000
MAST1   1380000 perm   954 sec   (1446 perm/sec)   p_kst 7.705652e-02   p_cons 3.188406e-04   p_joint 4.463768e-04

Joint ci ratio: 1.570162e-01	ci left: 4.130088e-04	ci right 4.840637e-04	k: 622	n:1390000
Cons ci ratio: 1.857960e-01	ci left: 2.904042e-04	ci right 3.505588e-04	k: 444	n:1390000
KS ci ratio: 1.150544e-02	ci left: 7.663196e-02	ci right 7.751945e-02	k: 107134	n:1390000
MAST1   1390000 perm   978 sec   (1421 perm/sec)   p_kst 7.707482e-02   p_cons 3.194245e-04   p_joint 4.474820e-04

Joint ci ratio: 1.563899e-01	ci left: 4.134902e-04	ci right 4.843174e-04	k: 627	n:1400000
Cons ci ratio: 1.853800e-01	ci left: 2.896921e-04	ci right 3.495497e-04	k: 446	n:1400000
KS ci ratio: 1.146346e-02	ci left: 7.664369e-02	ci right 7.752806e-02	k: 107919	n:1400000
MAST1   1400000 perm   994 sec   (1409 perm/sec)   p_kst 7.708500e-02   p_cons 3.185714e-04   p_joint 4.478571e-04

Joint ci ratio: 1.563901e-01	ci left: 4.105576e-04	ci right 4.808826e-04	k: 627	n:1410000
Cons ci ratio: 1.851731e-01	ci left: 2.883139e-04	ci right 3.478127e-04	k: 447	n:1410000
KS ci ratio: 1.142056e-02	ci left: 7.667225e-02	ci right 7.755361e-02	k: 108728	n:1410000
MAST1   1410000 perm   1006 sec   (1402 perm/sec)   p_kst 7.711206e-02   p_cons 3.170213e-04   p_joint 4.446809e-04

Joint ci ratio: 1.557712e-01	ci left: 4.110499e-04	ci right 4.811546e-04	k: 632	n:1420000
Cons ci ratio: 1.845562e-01	ci left: 2.882984e-04	ci right 3.475737e-04	k: 450	n:1420000
KS ci ratio: 1.138012e-02	ci left: 7.667582e-02	ci right 7.755408e-02	k: 109502	n:1420000
MAST1   1420000 perm   1018 sec   (1394 perm/sec)   p_kst 7.711408e-02   p_cons 3.169014e-04   p_joint 4.450704e-04

Joint ci ratio: 1.549169e-01	ci left: 4.128803e-04	ci right 4.828751e-04	k: 639	n:1430000
Cons ci ratio: 1.839454e-01	ci left: 2.882835e-04	ci right 3.473376e-04	k: 453	n:1430000
KS ci ratio: 1.134099e-02	ci left: 7.666818e-02	ci right 7.754332e-02	k: 110260	n:1430000
MAST1   1430000 perm   1031 sec   (1388 perm/sec)   p_kst 7.710490e-02   p_cons 3.167832e-04   p_joint 4.468531e-04

Joint ci ratio: 1.562664e-01	ci left: 4.026714e-04	ci right 4.715860e-04	k: 628	n:1440000
Cons ci ratio: 1.831404e-01	ci left: 2.889316e-04	ci right 3.478308e-04	k: 457	n:1440000
KS ci ratio: 1.130276e-02	ci left: 7.665443e-02	ci right 7.752644e-02	k: 111009	n:1440000
MAST1   1440000 perm   1043 sec   (1380 perm/sec)   p_kst 7.708958e-02   p_cons 3.173611e-04   p_joint 4.361111e-04

Joint ci ratio: 1.580361e-01	ci left: 3.906187e-04	ci right 4.582993e-04	k: 614	n:1450000
Cons ci ratio: 1.829409e-01	ci left: 2.875971e-04	ci right 3.461532e-04	k: 458	n:1450000
KS ci ratio: 1.126273e-02	ci left: 7.666838e-02	ci right 7.753744e-02	k: 111798	n:1450000
MAST1   1450000 perm   1055 sec   (1374 perm/sec)   p_kst 7.710207e-02   p_cons 3.158621e-04   p_joint 4.234483e-04

Joint ci ratio: 1.573975e-01	ci left: 3.912327e-04	ci right 4.587200e-04	k: 619	n:1460000
Cons ci ratio: 1.823460e-01	ci left: 2.875881e-04	ci right 3.459310e-04	k: 461	n:1460000
KS ci ratio: 1.122350e-02	ci left: 7.667737e-02	ci right 7.754348e-02	k: 112580	n:1460000
MAST1   1460000 perm   1067 sec   (1368 perm/sec)   p_kst 7.710959e-02   p_cons 3.157534e-04   p_joint 4.239726e-04

Joint ci ratio: 1.565163e-01	ci left: 3.931462e-04	ci right 4.605482e-04	k: 626	n:1470000
Cons ci ratio: 1.819526e-01	ci left: 2.869302e-04	ci right 3.450002e-04	k: 463	n:1470000
KS ci ratio: 1.118569e-02	ci left: 7.667335e-02	ci right 7.753648e-02	k: 113343	n:1470000
MAST1   1470000 perm   1080 sec   (1361 perm/sec)   p_kst 7.710408e-02   p_cons 3.149660e-04   p_joint 4.258503e-04

Joint ci ratio: 1.581655e-01	ci left: 3.820517e-04	ci right 4.483073e-04	k: 613	n:1480000
Cons ci ratio: 1.813673e-01	ci left: 2.869263e-04	ci right 3.447882e-04	k: 466	n:1480000
KS ci ratio: 1.114774e-02	ci left: 7.667613e-02	ci right 7.753634e-02	k: 114116	n:1480000
MAST1   1480000 perm   1115 sec   (1327 perm/sec)   p_kst 7.710541e-02   p_cons 3.148649e-04   p_joint 4.141892e-04

Joint ci ratio: 1.579086e-01	ci left: 3.807767e-04	ci right 4.466939e-04	k: 615	n:1490000
Cons ci ratio: 1.807875e-01	ci left: 2.869228e-04	ci right 3.445788e-04	k: 469	n:1490000
KS ci ratio: 1.110927e-02	ci left: 7.669025e-02	ci right 7.754764e-02	k: 114906	n:1490000
MAST1   1490000 perm   1152 sec   (1294 perm/sec)   p_kst 7.711812e-02   p_cons 3.147651e-04   p_joint 4.127517e-04

Joint ci ratio: 1.575255e-01	ci left: 3.801593e-04	ci right 4.457948e-04	k: 618	n:1500000
Cons ci ratio: 1.802133e-01	ci left: 2.869196e-04	ci right 3.443719e-04	k: 472	n:1500000
KS ci ratio: 1.107209e-02	ci left: 7.669289e-02	ci right 7.754741e-02	k: 115679	n:1500000
MAST1   1500000 perm   1182 sec   (1269 perm/sec)   p_kst 7.711933e-02   p_cons 3.146667e-04   p_joint 4.120000e-04

Joint ci ratio: 1.567675e-01	ci left: 3.814589e-04	ci right 4.469721e-04	k: 624	n:1510000
Cons ci ratio: 1.798336e-01	ci left: 2.862843e-04	ci right 3.434754e-04	k: 474	n:1510000
KS ci ratio: 1.103450e-02	ci left: 7.670540e-02	ci right 7.755715e-02	k: 116467	n:1510000
MAST1   1510000 perm   1203 sec   (1256 perm/sec)   p_kst 7.713046e-02   p_cons 3.139073e-04   p_joint 4.132450e-04

Joint ci ratio: 1.562682e-01	ci left: 3.814779e-04	ci right 4.467661e-04	k: 628	n:1520000
Cons ci ratio: 1.792684e-01	ci left: 2.862858e-04	ci right 3.432780e-04	k: 477	n:1520000
KS ci ratio: 1.099689e-02	ci left: 7.672301e-02	ci right 7.757203e-02	k: 117263	n:1520000
MAST1   1520000 perm   1215 sec   (1251 perm/sec)   p_kst 7.714671e-02   p_cons 3.138158e-04   p_joint 4.131579e-04

Joint ci ratio: 1.558970e-01	ci left: 3.808687e-04	ci right 4.458833e-04	k: 631	n:1530000
Cons ci ratio: 1.788946e-01	ci left: 2.856633e-04	ci right 3.424001e-04	k: 479	n:1530000
KS ci ratio: 1.096091e-02	ci left: 7.672409e-02	ci right 7.757032e-02	k: 118034	n:1530000
MAST1   1530000 perm   1228 sec   (1246 perm/sec)   p_kst 7.714641e-02   p_cons 3.130719e-04   p_joint 4.124183e-04

Joint ci ratio: 1.575264e-01	ci left: 3.702849e-04	ci right 4.342159e-04	k: 618	n:1540000
Cons ci ratio: 1.785231e-01	ci left: 2.850489e-04	ci right 3.415335e-04	k: 481	n:1540000
KS ci ratio: 1.092554e-02	ci left: 7.672192e-02	ci right 7.756539e-02	k: 118800	n:1540000
MAST1   1540000 perm   1248 sec   (1234 perm/sec)   p_kst 7.714286e-02   p_cons 3.123377e-04   p_joint 4.012987e-04

Joint ci ratio: 1.562689e-01	ci left: 3.740943e-04	ci right 4.381191e-04	k: 628	n:1550000
Cons ci ratio: 1.774221e-01	ci left: 2.869084e-04	ci right 3.433732e-04	k: 487	n:1550000
KS ci ratio: 1.089130e-02	ci left: 7.670949e-02	ci right 7.755016e-02	k: 119550	n:1550000
MAST1   1550000 perm   1275 sec   (1216 perm/sec)   p_kst 7.712903e-02   p_cons 3.141935e-04   p_joint 4.051613e-04

Joint ci ratio: 1.560211e-01	ci left: 3.729282e-04	ci right 4.366428e-04	k: 630	n:1560000
Cons ci ratio: 1.768792e-01	ci left: 2.869071e-04	ci right 3.431804e-04	k: 490	n:1560000
KS ci ratio: 1.085894e-02	ci left: 7.667676e-02	ci right 7.751456e-02	k: 120268	n:1560000
MAST1   1560000 perm   1300 sec   (1200 perm/sec)   p_kst 7.709487e-02   p_cons 3.141026e-04   p_joint 4.038462e-04

Joint ci ratio: 1.558978e-01	ci left: 3.711649e-04	ci right 4.345234e-04	k: 631	n:1570000
Cons ci ratio: 1.761631e-01	ci left: 2.875149e-04	ci right 3.436547e-04	k: 494	n:1570000
KS ci ratio: 1.082483e-02	ci left: 7.667113e-02	ci right 7.750622e-02	k: 121028	n:1570000
MAST1   1570000 perm   1329 sec   (1182 perm/sec)   p_kst 7.708790e-02   p_cons 3.146497e-04   p_joint 4.019108e-04

Joint ci ratio: 1.552847e-01	ci left: 3.718571e-04	ci right 4.350610e-04	k: 636	n:1580000
Cons ci ratio: 1.752799e-01	ci left: 2.887206e-04	ci right 3.447833e-04	k: 499	n:1580000
KS ci ratio: 1.079100e-02	ci left: 7.666622e-02	ci right 7.749863e-02	k: 121789	n:1580000
MAST1   1580000 perm   1362 sec   (1160 perm/sec)   p_kst 7.708165e-02   p_cons 3.158228e-04   p_joint 4.025316e-04

Joint ci ratio: 1.549204e-01	ci left: 3.713320e-04	ci right 4.342847e-04	k: 639	n:1590000
Cons ci ratio: 1.751050e-01	ci left: 2.875060e-04	ci right 3.432713e-04	k: 500	n:1590000
KS ci ratio: 1.075676e-02	ci left: 7.667078e-02	ci right 7.750058e-02	k: 122565	n:1590000
MAST1   1590000 perm   1382 sec   (1150 perm/sec)   p_kst 7.708491e-02   p_cons 3.144654e-04   p_joint 4.018868e-04

Joint ci ratio: 1.544385e-01	ci left: 3.714144e-04	ci right 4.341671e-04	k: 643	n:1600000
Cons ci ratio: 1.744101e-01	ci left: 2.880998e-04	ci right 3.437351e-04	k: 504	n:1600000
KS ci ratio: 1.072097e-02	ci left: 7.670022e-02	ci right 7.752756e-02	k: 123381	n:1600000
MAST1   1600000 perm   1398 sec   (1144 perm/sec)   p_kst 7.711313e-02   p_cons 3.150000e-04   p_joint 4.018750e-04

Joint ci ratio: 1.539611e-01	ci left: 3.714961e-04	ci right 4.340507e-04	k: 647	n:1610000
Cons ci ratio: 1.740658e-01	ci left: 2.874984e-04	ci right 3.428965e-04	k: 506	n:1610000
KS ci ratio: 1.068730e-02	ci left: 7.670576e-02	ci right 7.753055e-02	k: 124159	n:1610000
MAST1   1610000 perm   1411 sec   (1141 perm/sec)   p_kst 7.711739e-02   p_cons 3.142857e-04   p_joint 4.018634e-04

Joint ci ratio: 1.536060e-01	ci left: 3.709835e-04	ci right 4.332944e-04	k: 650	n:1620000
Cons ci ratio: 1.733832e-01	ci left: 2.880855e-04	ci right 3.433562e-04	k: 510	n:1620000
KS ci ratio: 1.065368e-02	ci left: 7.671493e-02	ci right 7.753720e-02	k: 124943	n:1620000
MAST1   1620000 perm   1424 sec   (1137 perm/sec)   p_kst 7.712531e-02   p_cons 3.148148e-04   p_joint 4.012346e-04

Joint ci ratio: 1.531362e-01	ci left: 3.710673e-04	ci right 4.331843e-04	k: 654	n:1630000
Cons ci ratio: 1.730449e-01	ci left: 2.874919e-04	ci right 3.425299e-04	k: 512	n:1630000
KS ci ratio: 1.061890e-02	ci left: 7.674357e-02	ci right 7.756345e-02	k: 125759	n:1630000
MAST1   1630000 perm   1438 sec   (1134 perm/sec)   p_kst 7.715276e-02   p_cons 3.141104e-04   p_joint 4.012270e-04

Joint ci ratio: 1.526708e-01	ci left: 3.711504e-04	ci right 4.330752e-04	k: 658	n:1640000
Cons ci ratio: 1.725412e-01	ci left: 2.874891e-04	ci right 3.423496e-04	k: 515	n:1640000
KS ci ratio: 1.058731e-02	ci left: 7.673355e-02	ci right 7.755087e-02	k: 126512	n:1640000
MAST1   1640000 perm   1451 sec   (1130 perm/sec)   p_kst 7.714146e-02   p_cons 3.140244e-04   p_joint 4.012195e-04

Joint ci ratio: 1.522095e-01	ci left: 3.712328e-04	ci right 4.329671e-04	k: 662	n:1650000
Cons ci ratio: 1.720418e-01	ci left: 2.874865e-04	ci right 3.421713e-04	k: 518	n:1650000
KS ci ratio: 1.055525e-02	ci left: 7.673393e-02	ci right 7.754877e-02	k: 127282	n:1650000
MAST1   1650000 perm   1465 sec   (1126 perm/sec)   p_kst 7.714061e-02   p_cons 3.139394e-04   p_joint 4.012121e-04

Joint ci ratio: 1.538433e-01	ci left: 3.608855e-04	ci right 4.216026e-04	k: 648	n:1660000
Cons ci ratio: 1.720419e-01	ci left: 2.857546e-04	ci right 3.401100e-04	k: 518	n:1660000
KS ci ratio: 1.052227e-02	ci left: 7.675054e-02	ci right 7.756299e-02	k: 128079	n:1660000
MAST1   1660000 perm   1494 sec   (1111 perm/sec)   p_kst 7.715602e-02   p_cons 3.120482e-04   p_joint 3.903614e-04

Joint ci ratio: 1.533714e-01	ci left: 3.610276e-04	ci right 4.215653e-04	k: 652	n:1670000
Cons ci ratio: 1.712191e-01	ci left: 2.869089e-04	ci right 3.411959e-04	k: 523	n:1670000
KS ci ratio: 1.048690e-02	ci left: 7.680339e-02	ci right 7.761365e-02	k: 128937	n:1670000
MAST1   1670000 perm   1529 sec   (1092 perm/sec)   p_kst 7.720778e-02   p_cons 3.131737e-04   p_joint 3.904192e-04

Joint ci ratio: 1.530204e-01	ci left: 3.605959e-04	ci right 4.209101e-04	k: 655	n:1680000
Cons ci ratio: 1.708933e-01	ci left: 2.863406e-04	ci right 3.404064e-04	k: 525	n:1680000
KS ci ratio: 1.045622e-02	ci left: 7.679683e-02	ci right 7.760463e-02	k: 129696	n:1680000
MAST1   1680000 perm   1558 sec   (1078 perm/sec)   p_kst 7.720000e-02   p_cons 3.125000e-04   p_joint 3.898810e-04

Joint ci ratio: 1.526717e-01	ci left: 3.601695e-04	ci right 4.202625e-04	k: 658	n:1690000
Cons ci ratio: 1.705694e-01	ci left: 2.857792e-04	ci right 3.396261e-04	k: 527	n:1690000
KS ci ratio: 1.042480e-02	ci left: 7.680392e-02	ci right 7.760936e-02	k: 130478	n:1690000
MAST1   1690000 perm   1586 sec   (1065 perm/sec)   p_kst 7.720592e-02   p_cons 3.118343e-04   p_joint 3.893491e-04

Joint ci ratio: 1.522105e-01	ci left: 3.603140e-04	ci right 4.202330e-04	k: 662	n:1700000
Cons ci ratio: 1.702473e-01	ci left: 2.852244e-04	ci right 3.388549e-04	k: 529	n:1700000
KS ci ratio: 1.039500e-02	ci left: 7.679275e-02	ci right 7.759575e-02	k: 131229	n:1700000
MAST1   1700000 perm   1603 sec   (1061 perm/sec)   p_kst 7.719353e-02   p_cons 3.111765e-04   p_joint 3.894118e-04

Joint ci ratio: 1.518673e-01	ci left: 3.598946e-04	ci right 4.195966e-04	k: 665	n:1710000
Cons ci ratio: 1.699271e-01	ci left: 2.846762e-04	ci right 3.380926e-04	k: 531	n:1710000
KS ci ratio: 1.036588e-02	ci left: 7.677587e-02	ci right 7.757644e-02	k: 131970	n:1710000
MAST1   1710000 perm   1618 sec   (1057 perm/sec)   p_kst 7.717544e-02   p_cons 3.105263e-04   p_joint 3.888889e-04

Joint ci ratio: 1.514133e-01	ci left: 3.600395e-04	ci right 4.195708e-04	k: 669	n:1720000
Cons ci ratio: 1.696086e-01	ci left: 2.841345e-04	ci right 3.373391e-04	k: 533	n:1720000
KS ci ratio: 1.033514e-02	ci left: 7.678472e-02	ci right 7.758299e-02	k: 132755	n:1720000
MAST1   1720000 perm   1632 sec   (1054 perm/sec)   p_kst 7.718314e-02   p_cons 3.098837e-04   p_joint 3.889535e-04

Joint ci ratio: 1.513005e-01	ci left: 3.585145e-04	ci right 4.177455e-04	k: 670	n:1730000
Cons ci ratio: 1.691342e-01	ci left: 2.841527e-04	ci right 3.371968e-04	k: 536	n:1730000
KS ci ratio: 1.030543e-02	ci left: 7.678308e-02	ci right 7.757903e-02	k: 133522	n:1730000
MAST1   1730000 perm   1646 sec   (1051 perm/sec)   p_kst 7.718035e-02   p_cons 3.098266e-04   p_joint 3.872832e-04

Joint ci ratio: 1.504064e-01	ci left: 3.608782e-04	ci right 4.201157e-04	k: 678	n:1740000
Cons ci ratio: 1.680423e-01	ci left: 2.863729e-04	ci right 3.394514e-04	k: 543	n:1740000
KS ci ratio: 1.027490e-02	ci left: 7.679638e-02	ci right 7.759009e-02	k: 134315	n:1740000
MAST1   1740000 perm   1660 sec   (1048 perm/sec)   p_kst 7.719253e-02   p_cons 3.120690e-04   p_joint 3.896552e-04

Joint ci ratio: 1.499653e-01	ci left: 3.610159e-04	ci right 4.200866e-04	k: 682	n:1750000
Cons ci ratio: 1.677343e-01	ci left: 2.858313e-04	ci right 3.387025e-04	k: 545	n:1750000
KS ci ratio: 1.024517e-02	ci left: 7.680211e-02	ci right 7.759357e-02	k: 135095	n:1750000
MAST1   1750000 perm   1674 sec   (1045 perm/sec)   p_kst 7.719714e-02   p_cons 3.114286e-04   p_joint 3.897143e-04

Joint ci ratio: 1.496371e-01	ci left: 3.606053e-04	ci right 4.194681e-04	k: 685	n:1760000
Cons ci ratio: 1.672754e-01	ci left: 2.858404e-04	ci right 3.385540e-04	k: 548	n:1760000
KS ci ratio: 1.021712e-02	ci left: 7.678795e-02	ci right 7.757708e-02	k: 135840	n:1760000
MAST1   1760000 perm   1689 sec   (1042 perm/sec)   p_kst 7.718182e-02   p_cons 3.113636e-04   p_joint 3.892045e-04

Joint ci ratio: 1.489869e-01	ci left: 3.618312e-04	ci right 4.206146e-04	k: 691	n:1770000
Cons ci ratio: 1.666693e-01	ci left: 2.863909e-04	ci right 3.389955e-04	k: 552	n:1770000
KS ci ratio: 1.018752e-02	ci left: 7.679875e-02	ci right 7.758569e-02	k: 136629	n:1770000
MAST1   1770000 perm   1703 sec   (1039 perm/sec)   p_kst 7.719153e-02   p_cons 3.118644e-04   p_joint 3.903955e-04

Joint ci ratio: 1.485581e-01	ci left: 3.619620e-04	ci right 4.205824e-04	k: 695	n:1780000
Cons ci ratio: 1.660697e-01	ci left: 2.869356e-04	ci right 3.394317e-04	k: 556	n:1780000
KS ci ratio: 1.016051e-02	ci left: 7.677692e-02	ci right 7.756154e-02	k: 137360	n:1780000
MAST1   1780000 perm   1725 sec   (1032 perm/sec)   p_kst 7.716854e-02   p_cons 3.123596e-04   p_joint 3.904494e-04

Joint ci ratio: 1.482390e-01	ci left: 3.615536e-04	ci right 4.199709e-04	k: 698	n:1790000
Cons ci ratio: 1.657724e-01	ci left: 2.864035e-04	ci right 3.386991e-04	k: 558	n:1790000
KS ci ratio: 1.013108e-02	ci left: 7.679212e-02	ci right 7.757461e-02	k: 138157	n:1790000
MAST1   1790000 perm   1755 sec   (1020 perm/sec)   p_kst 7.718268e-02   p_cons 3.117318e-04   p_joint 3.899441e-04

Joint ci ratio: 1.477116e-01	ci left: 3.622199e-04	ci right 4.205183e-04	k: 703	n:1800000
Cons ci ratio: 1.651824e-01	ci left: 2.869426e-04	ci right 3.391316e-04	k: 562	n:1800000
KS ci ratio: 1.010502e-02	ci left: 7.676337e-02	ci right 7.754355e-02	k: 138875	n:1800000
MAST1   1800000 perm   1785 sec   (1009 perm/sec)   p_kst 7.715278e-02   p_cons 3.122222e-04   p_joint 3.905556e-04

Joint ci ratio: 1.471898e-01	ci left: 3.628792e-04	ci right 4.210593e-04	k: 708	n:1810000
Cons ci ratio: 1.647441e-01	ci left: 2.869463e-04	ci right 3.389838e-04	k: 565	n:1810000
KS ci ratio: 1.007545e-02	ci left: 7.678731e-02	ci right 7.756543e-02	k: 139688	n:1810000
MAST1   1810000 perm   1816 sec   (997 perm/sec)   p_kst 7.717569e-02   p_cons 3.121547e-04   p_joint 3.911602e-04

Joint ci ratio: 1.412371e-01	ci left: 3.931935e-04	ci right 4.534697e-04	k: 769	n:1820000
Cons ci ratio: 1.638776e-01	ci left: 2.885309e-04	ci right 3.405533e-04	k: 571	n:1820000
KS ci ratio: 1.004690e-02	ci left: 7.680002e-02	ci right 7.757605e-02	k: 140481	n:1820000
MAST1   1820000 perm   1846 sec   (986 perm/sec)   p_kst 7.718736e-02   p_cons 3.137363e-04   p_joint 4.225275e-04

Joint ci ratio: 1.408717e-01	ci left: 3.931535e-04	ci right 4.532546e-04	k: 773	n:1830000
Cons ci ratio: 1.635919e-01	ci left: 2.880023e-04	ci right 3.398300e-04	k: 573	n:1830000
KS ci ratio: 1.002056e-02	ci left: 7.678479e-02	ci right 7.755862e-02	k: 141223	n:1830000
MAST1   1830000 perm   1876 sec   (975 perm/sec)   p_kst 7.717104e-02   p_cons 3.131148e-04   p_joint 4.224044e-04

Joint ci ratio: 1.406901e-01	ci left: 3.920655e-04	ci right 4.519165e-04	k: 775	n:1840000
Cons ci ratio: 1.635921e-01	ci left: 2.864371e-04	ci right 3.379831e-04	k: 573	n:1840000
KS ci ratio: 9.992410e-03	ci left: 7.679847e-02	ci right 7.757025e-02	k: 142018	n:1840000
MAST1   1840000 perm   1891 sec   (973 perm/sec)   p_kst 7.718370e-02   p_cons 3.114130e-04   p_joint 4.211957e-04

Joint ci ratio: 1.418842e-01	ci left: 3.831674e-04	ci right 4.421986e-04	k: 762	n:1850000
Cons ci ratio: 1.633079e-01	ci left: 2.859256e-04	ci right 3.372815e-04	k: 575	n:1850000
KS ci ratio: 9.965701e-03	ci left: 7.679475e-02	ci right 7.756442e-02	k: 142781	n:1850000
MAST1   1850000 perm   1906 sec   (971 perm/sec)   p_kst 7.717892e-02   p_cons 3.108108e-04   p_joint 4.118919e-04

Joint ci ratio: 1.399705e-01	ci left: 3.919998e-04	ci right 4.515092e-04	k: 783	n:1860000
Cons ci ratio: 1.630251e-01	ci left: 2.854197e-04	ci right 3.365873e-04	k: 577	n:1860000
KS ci ratio: 9.940594e-03	ci left: 7.677122e-02	ci right 7.753870e-02	k: 143507	n:1860000
MAST1   1860000 perm   1921 sec   (968 perm/sec)   p_kst 7.715430e-02   p_cons 3.102151e-04   p_joint 4.209677e-04

Joint ci ratio: 1.396148e-01	ci left: 3.919678e-04	ci right 4.513085e-04	k: 787	n:1870000
Cons ci ratio: 1.626037e-01	ci left: 2.854323e-04	ci right 3.364569e-04	k: 580	n:1870000
KS ci ratio: 9.914707e-03	ci left: 7.676181e-02	ci right 7.752720e-02	k: 144259	n:1870000
MAST1   1870000 perm   1937 sec   (966 perm/sec)   p_kst 7.714385e-02   p_cons 3.101604e-04   p_joint 4.208556e-04

Joint ci ratio: 1.392618e-01	ci left: 3.919363e-04	ci right 4.511098e-04	k: 791	n:1880000
Cons ci ratio: 1.624640e-01	ci left: 2.844243e-04	ci right 3.352208e-04	k: 581	n:1880000
KS ci ratio: 9.886842e-03	ci left: 7.678383e-02	ci right 7.754726e-02	k: 145070	n:1880000
MAST1   1880000 perm   1952 sec   (963 perm/sec)   p_kst 7.716489e-02   p_cons 3.090426e-04   p_joint 4.207447e-04

Joint ci ratio: 1.406003e-01	ci left: 3.822037e-04	ci right 4.405089e-04	k: 776	n:1890000
Cons ci ratio: 1.621856e-01	ci left: 2.839347e-04	ci right 3.345483e-04	k: 583	n:1890000
KS ci ratio: 9.860602e-03	ci left: 7.678555e-02	ci right 7.754697e-02	k: 145843	n:1890000
MAST1   1890000 perm   1967 sec   (961 perm/sec)   p_kst 7.716561e-02   p_cons 3.084656e-04   p_joint 4.105820e-04

Joint ci ratio: 1.403297e-01	ci left: 3.817156e-04	ci right 4.398249e-04	k: 779	n:1900000
Cons ci ratio: 1.616330e-01	ci left: 2.844602e-04	ci right 3.349780e-04	k: 587	n:1900000
KS ci ratio: 9.834716e-03	ci left: 7.678515e-02	ci right 7.754456e-02	k: 146612	n:1900000
MAST1   1900000 perm   1982 sec   (959 perm/sec)   p_kst 7.716421e-02   p_cons 3.089474e-04   p_joint 4.100000e-04

Joint ci ratio: 1.402399e-01	ci left: 3.802222e-04	ci right 4.380641e-04	k: 780	n:1910000
Cons ci ratio: 1.616331e-01	ci left: 2.829709e-04	ci right 3.332242e-04	k: 587	n:1910000
KS ci ratio: 9.809465e-03	ci left: 7.677850e-02	ci right 7.753587e-02	k: 147369	n:1910000
MAST1   1910000 perm   2009 sec   (951 perm/sec)   p_kst 7.715654e-02   p_cons 3.073298e-04   p_joint 4.083770e-04

Joint ci ratio: 1.397931e-01	ci left: 3.807548e-04	ci right 4.384778e-04	k: 785	n:1920000
Cons ci ratio: 1.610861e-01	ci left: 2.834963e-04	ci right 3.336561e-04	k: 591	n:1920000
KS ci ratio: 9.784408e-03	ci left: 7.677191e-02	ci right 7.752728e-02	k: 148126	n:1920000
MAST1   1920000 perm   2049 sec   (937 perm/sec)   p_kst 7.714896e-02   p_cons 3.078125e-04   p_joint 4.088542e-04

Joint ci ratio: 1.395271e-01	ci left: 3.802821e-04	ci right 4.378146e-04	k: 788	n:1930000
Cons ci ratio: 1.608148e-01	ci left: 2.830219e-04	ci right 3.330053e-04	k: 593	n:1930000
KS ci ratio: 9.757943e-03	ci left: 7.678866e-02	ci right 7.754214e-02	k: 148928	n:1930000
MAST1   1930000 perm   2096 sec   (921 perm/sec)   p_kst 7.716477e-02   p_cons 3.072539e-04   p_joint 4.082902e-04

Joint ci ratio: 1.407824e-01	ci left: 3.713583e-04	ci right 4.280886e-04	k: 774	n:1940000
Cons ci ratio: 1.601421e-01	ci left: 2.840369e-04	ci right 3.339695e-04	k: 598	n:1940000
KS ci ratio: 9.732432e-03	ci left: 7.679444e-02	ci right 7.754600e-02	k: 149709	n:1940000
MAST1   1940000 perm   2132 sec   (910 perm/sec)   p_kst 7.716959e-02   p_cons 3.082474e-04   p_joint 3.989691e-04

Joint ci ratio: 1.404205e-01	ci left: 3.714330e-04	ci right 4.280167e-04	k: 778	n:1950000
Cons ci ratio: 1.596100e-01	ci left: 2.845495e-04	ci right 3.343901e-04	k: 602	n:1950000
KS ci ratio: 9.706212e-03	ci left: 7.681347e-02	ci right 7.756317e-02	k: 150516	n:1950000
MAST1   1950000 perm   2164 sec   (901 perm/sec)   p_kst 7.718769e-02   p_cons 3.087179e-04   p_joint 3.989744e-04

Joint ci ratio: 1.398827e-01	ci left: 3.724919e-04	ci right 4.290014e-04	k: 784	n:1960000
Cons ci ratio: 1.589523e-01	ci left: 2.855471e-04	ci right 3.353366e-04	k: 607	n:1960000
KS ci ratio: 9.681866e-03	ci left: 7.680787e-02	ci right 7.755563e-02	k: 151275	n:1960000
MAST1   1960000 perm   2186 sec   (897 perm/sec)   p_kst 7.718112e-02   p_cons 3.096939e-04   p_joint 4.000000e-04

Joint ci ratio: 1.396163e-01	ci left: 3.720706e-04	ci right 4.283998e-04	k: 787	n:1970000
Cons ci ratio: 1.589524e-01	ci left: 2.840976e-04	ci right 3.336344e-04	k: 607	n:1970000
KS ci ratio: 9.657462e-03	ci left: 7.680587e-02	ci right 7.755172e-02	k: 152041	n:1970000
MAST1   1970000 perm   2202 sec   (895 perm/sec)   p_kst 7.717817e-02   p_cons 3.081218e-04   p_joint 3.994924e-04

Joint ci ratio: 1.412395e-01	ci left: 3.614198e-04	ci right 4.168262e-04	k: 769	n:1980000
Cons ci ratio: 1.588219e-01	ci left: 2.831477e-04	ci right 3.324745e-04	k: 608	n:1980000
KS ci ratio: 9.631943e-03	ci left: 7.682305e-02	ci right 7.756708e-02	k: 152845	n:1980000
MAST1   1980000 perm   2217 sec   (893 perm/sec)   p_kst 7.719444e-02   p_cons 3.070707e-04   p_joint 3.883838e-04

Joint ci ratio: 1.410565e-01	ci left: 3.605732e-04	ci right 4.157721e-04	k: 771	n:1990000
Cons ci ratio: 1.586918e-01	ci left: 2.822074e-04	ci right 3.313263e-04	k: 609	n:1990000
KS ci ratio: 9.606220e-03	ci left: 7.684607e-02	ci right 7.758832e-02	k: 153661	n:1990000
MAST1   1990000 perm   2233 sec   (891 perm/sec)   p_kst 7.721658e-02   p_cons 3.060302e-04   p_joint 3.874372e-04

Joint ci ratio: 1.424478e-01	ci left: 3.515362e-04	ci right 4.059276e-04	k: 756	n:2000000
Cons ci ratio: 1.580453e-01	ci left: 2.831973e-04	ci right 3.322686e-04	k: 614	n:2000000
KS ci ratio: 9.582785e-03	ci left: 7.683794e-02	ci right 7.757829e-02	k: 154415	n:2000000
MAST1   2000000 perm   2249 sec   (889 perm/sec)   p_kst 7.720750e-02   p_cons 3.070000e-04   p_joint 3.780000e-04

Joint ci ratio: 1.333324e-01	ci left: 4.011873e-04	ci right 4.589744e-04	k: 863	n:2010000
Cons ci ratio: 1.574067e-01	ci left: 2.841777e-04	ci right 3.332012e-04	k: 619	n:2010000
KS ci ratio: 9.559621e-03	ci left: 7.682839e-02	ci right 7.756685e-02	k: 155166	n:2010000
MAST1   2010000 perm   2265 sec   (887 perm/sec)   p_kst 7.719701e-02   p_cons 3.079602e-04   p_joint 4.293532e-04

Joint ci ratio: 1.329483e-01	ci left: 4.015940e-04	ci right 4.592599e-04	k: 868	n:2020000
Cons ci ratio: 1.571534e-01	ci left: 2.837221e-04	ci right 3.325807e-04	k: 621	n:2020000
KS ci ratio: 9.534570e-03	ci left: 7.684957e-02	ci right 7.758629e-02	k: 155979	n:2020000
MAST1   2020000 perm   2295 sec   (880 perm/sec)   p_kst 7.721733e-02   p_cons 3.074257e-04   p_joint 4.297030e-04

Joint ci ratio: 1.327956e-01	ci left: 4.005682e-04	ci right 4.580155e-04	k: 870	n:2030000
Cons ci ratio: 1.570273e-01	ci left: 2.827976e-04	ci right 3.314544e-04	k: 622	n:2030000
KS ci ratio: 9.510668e-03	ci left: 7.685629e-02	ci right 7.759122e-02	k: 156763	n:2030000
MAST1   2030000 perm   2328 sec   (872 perm/sec)   p_kst 7.722315e-02   p_cons 3.064039e-04   p_joint 4.285714e-04

Joint ci ratio: 1.324917e-01	ci left: 4.005004e-04	ci right 4.577961e-04	k: 874	n:2040000
Cons ci ratio: 1.566506e-01	ci left: 2.828243e-04	ci right 3.313578e-04	k: 625	n:2040000
KS ci ratio: 9.489002e-03	ci left: 7.683213e-02	ci right 7.756515e-02	k: 157484	n:2040000
MAST1   2040000 perm   2362 sec   (864 perm/sec)   p_kst 7.719804e-02   p_cons 3.063725e-04   p_joint 4.284314e-04

Joint ci ratio: 1.323406e-01	ci left: 3.994900e-04	ci right 4.565709e-04	k: 876	n:2050000
Cons ci ratio: 1.564010e-01	ci left: 2.823820e-04	ci right 3.307553e-04	k: 627	n:2050000
KS ci ratio: 9.466574e-03	ci left: 7.682184e-02	ci right 7.755301e-02	k: 158233	n:2050000
MAST1   2050000 perm   2395 sec   (856 perm/sec)   p_kst 7.718683e-02   p_cons 3.058537e-04   p_joint 4.273171e-04

Joint ci ratio: 1.321149e-01	ci left: 3.989588e-04	ci right 4.558590e-04	k: 879	n:2060000
Cons ci ratio: 1.557820e-01	ci left: 2.833436e-04	ci right 3.316716e-04	k: 632	n:2060000
KS ci ratio: 9.444788e-03	ci left: 7.680438e-02	ci right 7.753370e-02	k: 158967	n:2060000
MAST1   2060000 perm   2420 sec   (851 perm/sec)   p_kst 7.716845e-02   p_cons 3.067961e-04   p_joint 4.266990e-04

Joint ci ratio: 1.318157e-01	ci left: 3.989001e-04	ci right 4.556529e-04	k: 883	n:2070000
Cons ci ratio: 1.552921e-01	ci left: 2.838320e-04	ci right 3.320768e-04	k: 636	n:2070000
KS ci ratio: 9.422065e-03	ci left: 7.680349e-02	ci right 7.753103e-02	k: 159735	n:2070000
MAST1   2070000 perm   2437 sec   (849 perm/sec)   p_kst 7.716667e-02   p_cons 3.072464e-04   p_joint 4.265700e-04

Joint ci ratio: 1.315926e-01	ci left: 3.983771e-04	ci right 4.549521e-04	k: 886	n:2080000
Cons ci ratio: 1.551704e-01	ci left: 2.829295e-04	ci right 3.309797e-04	k: 637	n:2080000
KS ci ratio: 9.399093e-03	ci left: 7.680884e-02	ci right 7.753465e-02	k: 160516	n:2080000
MAST1   2080000 perm   2454 sec   (848 perm/sec)   p_kst 7.717115e-02   p_cons 3.062500e-04   p_joint 4.259615e-04

Joint ci ratio: 1.311497e-01	ci left: 3.992474e-04	ci right 4.557404e-04	k: 892	n:2090000
Cons ci ratio: 1.548069e-01	ci left: 2.829555e-04	ci right 3.308871e-04	k: 640	n:2090000
KS ci ratio: 9.375563e-03	ci left: 7.682512e-02	ci right 7.754926e-02	k: 161320	n:2090000
MAST1   2090000 perm   2471 sec   (846 perm/sec)   p_kst 7.718660e-02   p_cons 3.062201e-04   p_joint 4.267943e-04

Joint ci ratio: 1.310032e-01	ci left: 3.982674e-04	ci right 4.545538e-04	k: 894	n:2100000
Cons ci ratio: 1.545660e-01	ci left: 2.825236e-04	ci right 3.303007e-04	k: 642	n:2100000
KS ci ratio: 9.353554e-03	ci left: 7.682082e-02	ci right 7.754320e-02	k: 162081	n:2100000
MAST1   2100000 perm   2489 sec   (844 perm/sec)   p_kst 7.718143e-02   p_cons 3.057143e-04   p_joint 4.257143e-04

Joint ci ratio: 1.307842e-01	ci left: 3.977551e-04	ci right 4.538678e-04	k: 897	n:2110000
Cons ci ratio: 1.543262e-01	ci left: 2.820959e-04	ci right 3.297197e-04	k: 644	n:2110000
KS ci ratio: 9.331947e-03	ci left: 7.681278e-02	ci right 7.753341e-02	k: 162834	n:2110000
MAST1   2110000 perm   2505 sec   (842 perm/sec)   p_kst 7.717251e-02   p_cons 3.052133e-04   p_joint 4.251185e-04

Joint ci ratio: 1.305663e-01	ci left: 3.972477e-04	ci right 4.531883e-04	k: 900	n:2120000
Cons ci ratio: 1.538499e-01	ci left: 2.825793e-04	ci right 3.301239e-04	k: 648	n:2120000
KS ci ratio: 9.310551e-03	ci left: 7.680387e-02	ci right 7.752276e-02	k: 163585	n:2120000
MAST1   2120000 perm   2522 sec   (841 perm/sec)   p_kst 7.716274e-02   p_cons 3.056604e-04   p_joint 4.245283e-04

Joint ci ratio: 1.304217e-01	ci left: 3.962910e-04	ci right 4.520303e-04	k: 902	n:2130000
Cons ci ratio: 1.537316e-01	ci left: 2.817040e-04	ci right 3.290616e-04	k: 649	n:2130000
KS ci ratio: 9.288352e-03	ci left: 7.680957e-02	ci right 7.752679e-02	k: 164367	n:2130000
MAST1   2130000 perm   2538 sec   (839 perm/sec)   p_kst 7.716761e-02   p_cons 3.046948e-04   p_joint 4.234742e-04

Joint ci ratio: 1.299905e-01	ci left: 3.971516e-04	ci right 4.528130e-04	k: 908	n:2140000
Cons ci ratio: 1.531436e-01	ci left: 2.826344e-04	ci right 3.299500e-04	k: 654	n:2140000
KS ci ratio: 9.265642e-03	ci left: 7.682548e-02	ci right 7.754108e-02	k: 165171	n:2140000
MAST1   2140000 perm   2556 sec   (837 perm/sec)   p_kst 7.718271e-02   p_cons 3.056075e-04   p_joint 4.242991e-04

Joint ci ratio: 1.297766e-01	ci left: 3.966544e-04	ci right 4.521475e-04	k: 911	n:2150000
Cons ci ratio: 1.529104e-01	ci left: 2.822144e-04	ci right 3.293812e-04	k: 656	n:2150000
KS ci ratio: 9.243098e-03	ci left: 7.684124e-02	ci right 7.755524e-02	k: 165975	n:2150000
MAST1   2150000 perm   2573 sec   (836 perm/sec)   p_kst 7.719767e-02   p_cons 3.051163e-04   p_joint 4.237209e-04

Joint ci ratio: 1.294929e-01	ci left: 3.966098e-04	ci right 4.519661e-04	k: 915	n:2160000
Cons ci ratio: 1.526782e-01	ci left: 2.817984e-04	ci right 3.288176e-04	k: 658	n:2160000
KS ci ratio: 9.220958e-03	ci left: 7.685317e-02	ci right 7.756556e-02	k: 166771	n:2160000
MAST1   2160000 perm   2590 sec   (834 perm/sec)   p_kst 7.720880e-02   p_cons 3.046296e-04   p_joint 4.236111e-04

Joint ci ratio: 1.292815e-01	ci left: 3.961199e-04	ci right 4.513106e-04	k: 918	n:2170000
Cons ci ratio: 1.522169e-01	ci left: 2.822728e-04	ci right 3.292159e-04	k: 662	n:2170000
KS ci ratio: 9.199392e-03	ci left: 7.685855e-02	ci right 7.756931e-02	k: 167553	n:2170000
MAST1   2170000 perm   2607 sec   (832 perm/sec)   p_kst 7.721336e-02   p_cons 3.050691e-04   p_joint 4.230415e-04

Joint ci ratio: 1.290010e-01	ci left: 3.960784e-04	ci right 4.511344e-04	k: 922	n:2180000
Cons ci ratio: 1.518737e-01	ci left: 2.823018e-04	ci right 3.291342e-04	k: 665	n:2180000
KS ci ratio: 9.176736e-03	ci left: 7.688310e-02	ci right 7.759233e-02	k: 168377	n:2180000
MAST1   2180000 perm   2624 sec   (831 perm/sec)   p_kst 7.723716e-02   p_cons 3.050459e-04   p_joint 4.229358e-04

Joint ci ratio: 1.286530e-01	ci left: 3.964794e-04	ci right 4.514311e-04	k: 927	n:2190000
Cons ci ratio: 1.516462e-01	ci left: 2.818913e-04	ci right 3.285792e-04	k: 667	n:2190000
KS ci ratio: 9.155215e-03	ci left: 7.689240e-02	ci right 7.760004e-02	k: 169168	n:2190000
MAST1   2190000 perm   2641 sec   (829 perm/sec)   p_kst 7.724566e-02   p_cons 3.045662e-04   p_joint 4.232877e-04

Joint ci ratio: 1.283078e-01	ci left: 3.968769e-04	ci right 4.517249e-04	k: 932	n:2200000
Cons ci ratio: 1.510817e-01	ci left: 2.827966e-04	ci right 3.294444e-04	k: 672	n:2200000
KS ci ratio: 9.135009e-03	ci left: 7.688347e-02	ci right 7.758946e-02	k: 169919	n:2200000
MAST1   2200000 perm   2658 sec   (828 perm/sec)   p_kst 7.723591e-02   p_cons 3.054545e-04   p_joint 4.236364e-04

Joint ci ratio: 1.281020e-01	ci left: 3.963950e-04	ci right 4.510818e-04	k: 935	n:2210000
Cons ci ratio: 1.509697e-01	ci left: 2.819524e-04	ci right 3.284232e-04	k: 673	n:2210000
KS ci ratio: 9.115486e-03	ci left: 7.686604e-02	ci right 7.757036e-02	k: 170651	n:2210000
MAST1   2210000 perm   2675 sec   (826 perm/sec)   p_kst 7.721765e-02   p_cons 3.045249e-04   p_joint 4.230769e-04

Joint ci ratio: 1.278973e-01	ci left: 3.959175e-04	ci right 4.504445e-04	k: 938	n:2220000
Cons ci ratio: 1.507462e-01	ci left: 2.815492e-04	ci right 3.278788e-04	k: 675	n:2220000
KS ci ratio: 9.095311e-03	ci left: 7.686091e-02	ci right 7.756362e-02	k: 171410	n:2220000
MAST1   2220000 perm   2692 sec   (825 perm/sec)   p_kst 7.721171e-02   p_cons 3.040541e-04   p_joint 4.225225e-04

Joint ci ratio: 1.277614e-01	ci left: 3.950102e-04	ci right 4.493502e-04	k: 940	n:2230000
Cons ci ratio: 1.505238e-01	ci left: 2.811497e-04	ci right 3.273391e-04	k: 677	n:2230000
KS ci ratio: 9.073414e-03	ci left: 7.688492e-02	ci right 7.758614e-02	k: 172234	n:2230000
MAST1   2230000 perm   2709 sec   (823 perm/sec)   p_kst 7.723498e-02   p_cons 3.035874e-04   p_joint 4.215247e-04

Joint ci ratio: 1.276259e-01	ci left: 3.941111e-04	ci right 4.482655e-04	k: 942	n:2240000
Cons ci ratio: 1.503023e-01	ci left: 2.807538e-04	ci right 3.268042e-04	k: 679	n:2240000
KS ci ratio: 9.052978e-03	ci left: 7.688821e-02	ci right 7.758788e-02	k: 173012	n:2240000
MAST1   2240000 perm   2727 sec   (821 perm/sec)   p_kst 7.723750e-02   p_cons 3.031250e-04   p_joint 4.205357e-04

Joint ci ratio: 1.272217e-01	ci left: 3.949412e-04	ci right 4.490248e-04	k: 948	n:2250000
Cons ci ratio: 1.496434e-01	ci left: 2.820726e-04	ci right 3.281184e-04	k: 685	n:2250000
KS ci ratio: 9.033497e-03	ci left: 7.687862e-02	ci right 7.757669e-02	k: 173761	n:2250000
MAST1   2250000 perm   2745 sec   (820 perm/sec)   p_kst 7.722711e-02   p_cons 3.044444e-04   p_joint 4.213333e-04

Joint ci ratio: 1.271548e-01	ci left: 3.936220e-04	ci right 4.474946e-04	k: 949	n:2260000
Cons ci ratio: 1.491010e-01	ci left: 2.829542e-04	ci right 3.289615e-04	k: 690	n:2260000
KS ci ratio: 9.012965e-03	ci left: 7.688766e-02	ci right 7.758422e-02	k: 174552	n:2260000
MAST1   2260000 perm   2763 sec   (818 perm/sec)   p_kst 7.723540e-02   p_cons 3.053097e-04   p_joint 4.199115e-04

Joint ci ratio: 1.268215e-01	ci left: 3.940207e-04	ci right 4.477958e-04	k: 954	n:2270000
Cons ci ratio: 1.485644e-01	ci left: 2.838284e-04	ci right 3.297970e-04	k: 695	n:2270000
KS ci ratio: 8.993518e-03	ci left: 7.688168e-02	ci right 7.757667e-02	k: 175309	n:2270000
MAST1   2270000 perm   2781 sec   (816 perm/sec)   p_kst 7.722863e-02   p_cons 3.061674e-04   p_joint 4.202643e-04

Joint ci ratio: 1.266228e-01	ci left: 3.935666e-04	ci right 4.471893e-04	k: 957	n:2280000
Cons ci ratio: 1.482453e-01	ci left: 2.838504e-04	ci right 3.297151e-04	k: 698	n:2280000
KS ci ratio: 8.972870e-03	ci left: 7.689676e-02	ci right 7.759028e-02	k: 176114	n:2280000
MAST1   2280000 perm   2798 sec   (815 perm/sec)   p_kst 7.724298e-02   p_cons 3.061404e-04   p_joint 4.197368e-04

Joint ci ratio: 1.292126e-01	ci left: 3.757848e-04	ci right 4.281122e-04	k: 919	n:2290000
Cons ci ratio: 1.478229e-01	ci left: 2.842929e-04	ci right 3.300867e-04	k: 702	n:2290000
KS ci ratio: 8.952913e-03	ci left: 7.690299e-02	ci right 7.759502e-02	k: 176899	n:2290000
MAST1   2290000 perm   2816 sec   (813 perm/sec)   p_kst 7.724847e-02   p_cons 3.065502e-04   p_joint 4.013100e-04

Joint ci ratio: 1.243706e-01	ci left: 4.048842e-04	ci right 4.589953e-04	k: 992	n:2300000
Cons ci ratio: 1.476131e-01	ci left: 2.838943e-04	ci right 3.295532e-04	k: 704	n:2300000
KS ci ratio: 8.933388e-03	ci left: 7.690440e-02	ci right 7.759492e-02	k: 177673	n:2300000
MAST1   2300000 perm   2834 sec   (812 perm/sec)   p_kst 7.724913e-02   p_cons 3.060870e-04   p_joint 4.313043e-04

Joint ci ratio: 1.241831e-01	ci left: 4.043897e-04	ci right 4.583474e-04	k: 995	n:2310000
Cons ci ratio: 1.473000e-01	ci left: 2.839161e-04	ci right 3.294731e-04	k: 707	n:2310000
KS ci ratio: 8.913286e-03	ci left: 7.691703e-02	ci right 7.760611e-02	k: 178473	n:2310000
MAST1   2310000 perm   2852 sec   (810 perm/sec)   p_kst 7.726104e-02   p_cons 3.060606e-04   p_joint 4.307359e-04

Joint ci ratio: 1.237490e-01	ci left: 4.055704e-04	ci right 4.594825e-04	k: 1002	n:2320000
Cons ci ratio: 1.469889e-01	ci left: 2.839378e-04	ci right 3.293937e-04	k: 710	n:2320000
KS ci ratio: 8.895470e-03	ci left: 7.689514e-02	ci right 7.758264e-02	k: 179193	n:2320000
MAST1   2320000 perm   2870 sec   (808 perm/sec)   p_kst 7.723836e-02   p_cons 3.060345e-04   p_joint 4.318966e-04

Joint ci ratio: 1.235030e-01	ci left: 4.054934e-04	ci right 4.592803e-04	k: 1006	n:2330000
Cons ci ratio: 1.467827e-01	ci left: 2.835460e-04	ci right 3.288699e-04	k: 712	n:2330000
KS ci ratio: 8.876051e-03	ci left: 7.690086e-02	ci right 7.758689e-02	k: 179977	n:2330000
MAST1   2330000 perm   2888 sec   (807 perm/sec)   p_kst 7.724335e-02   p_cons 3.055794e-04   p_joint 4.317597e-04

Joint ci ratio: 1.246855e-01	ci left: 3.958928e-04	ci right 4.489461e-04	k: 987	n:2340000
Cons ci ratio: 1.465773e-01	ci left: 2.831576e-04	ci right 3.283505e-04	k: 714	n:2340000
KS ci ratio: 8.857129e-03	ci left: 7.690055e-02	ci right 7.758511e-02	k: 180747	n:2340000
MAST1   2340000 perm   2906 sec   (805 perm/sec)   p_kst 7.724231e-02   p_cons 3.051282e-04   p_joint 4.217949e-04

Joint ci ratio: 1.244966e-01	ci left: 3.954449e-04	ci right 4.483521e-04	k: 990	n:2350000
Cons ci ratio: 1.463727e-01	ci left: 2.827726e-04	ci right 3.278355e-04	k: 716	n:2350000
KS ci ratio: 8.837932e-03	ci left: 7.690662e-02	ci right 7.758974e-02	k: 181532	n:2350000
MAST1   2350000 perm   2925 sec   (804 perm/sec)   p_kst 7.724766e-02   p_cons 3.046809e-04   p_joint 4.212766e-04

Joint ci ratio: 1.243086e-01	ci left: 3.950009e-04	ci right 4.477630e-04	k: 993	n:2360000
Cons ci ratio: 1.463728e-01	ci left: 2.815744e-04	ci right 3.264464e-04	k: 716	n:2360000
KS ci ratio: 8.819306e-03	ci left: 7.690545e-02	ci right 7.758712e-02	k: 182300	n:2360000
MAST1   2360000 perm   2943 sec   (802 perm/sec)   p_kst 7.724576e-02   p_cons 3.033898e-04   p_joint 4.207627e-04

Joint ci ratio: 1.241838e-01	ci left: 3.941519e-04	ci right 4.467438e-04	k: 995	n:2370000
Cons ci ratio: 1.463729e-01	ci left: 2.803863e-04	ci right 3.250690e-04	k: 716	n:2370000
KS ci ratio: 8.801187e-03	ci left: 7.689797e-02	ci right 7.757817e-02	k: 183053	n:2370000
MAST1   2370000 perm   2961 sec   (800 perm/sec)   p_kst 7.723755e-02   p_cons 3.021097e-04   p_joint 4.198312e-04

Joint ci ratio: 1.225335e-01	ci left: 4.034904e-04	ci right 4.565610e-04	k: 1022	n:2380000
Cons ci ratio: 1.462710e-01	ci left: 2.796130e-04	ci right 3.241387e-04	k: 717	n:2380000
KS ci ratio: 8.781057e-03	ci left: 7.692495e-02	ci right 7.760381e-02	k: 183888	n:2380000
MAST1   2380000 perm   2979 sec   (799 perm/sec)   p_kst 7.726387e-02   p_cons 3.012605e-04   p_joint 4.294118e-04

Joint ci ratio: 1.238734e-01	ci left: 3.928807e-04	ci right 4.451623e-04	k: 1000	n:2390000
Cons ci ratio: 1.459664e-01	ci left: 2.796524e-04	ci right 3.240835e-04	k: 720	n:2390000
KS ci ratio: 8.762349e-03	ci left: 7.693082e-02	ci right 7.760828e-02	k: 184673	n:2390000
MAST1   2390000 perm   2998 sec   (797 perm/sec)   p_kst 7.726904e-02   p_cons 3.012552e-04   p_joint 4.184100e-04

Joint ci ratio: 1.236882e-01	ci left: 3.924550e-04	ci right 4.445961e-04	k: 1003	n:2400000
Cons ci ratio: 1.459665e-01	ci left: 2.784872e-04	ci right 3.227332e-04	k: 720	n:2400000
KS ci ratio: 8.744451e-03	ci left: 7.692541e-02	ci right 7.760144e-02	k: 185431	n:2400000
MAST1   2400000 perm   3017 sec   (796 perm/sec)   p_kst 7.726292e-02   p_cons 3.000000e-04   p_joint 4.179167e-04

Joint ci ratio: 1.234425e-01	ci left: 3.924350e-04	ci right 4.444624e-04	k: 1007	n:2410000
Cons ci ratio: 1.454629e-01	ci left: 2.793307e-04	ci right 3.235443e-04	k: 725	n:2410000
KS ci ratio: 8.724478e-03	ci left: 7.695567e-02	ci right 7.763041e-02	k: 186275	n:2410000
MAST1   2410000 perm   3036 sec   (794 perm/sec)   p_kst 7.729253e-02   p_cons 3.008299e-04   p_joint 4.178423e-04

Joint ci ratio: 1.230767e-01	ci left: 3.932162e-04	ci right 4.451815e-04	k: 1013	n:2420000
Cons ci ratio: 1.452630e-01	ci left: 2.789728e-04	ci right 3.230639e-04	k: 727	n:2420000
KS ci ratio: 8.707567e-03	ci left: 7.693784e-02	ci right 7.761111e-02	k: 187003	n:2420000
MAST1   2420000 perm   3054 sec   (792 perm/sec)   p_kst 7.727397e-02   p_cons 3.004132e-04   p_joint 4.185950e-04

Joint ci ratio: 1.228347e-01	ci left: 3.931935e-04	ci right 4.450462e-04	k: 1017	n:2430000
Cons ci ratio: 1.450639e-01	ci left: 2.786179e-04	ci right 3.225873e-04	k: 729	n:2430000
KS ci ratio: 8.690202e-03	ci left: 7.692919e-02	ci right 7.760104e-02	k: 187753	n:2430000
MAST1   2430000 perm   3073 sec   (791 perm/sec)   p_kst 7.726461e-02   p_cons 3.000000e-04   p_joint 4.185185e-04

Joint ci ratio: 1.224743e-01	ci left: 3.939657e-04	ci right 4.457566e-04	k: 1023	n:2440000
Cons ci ratio: 1.447667e-01	ci left: 2.786610e-04	ci right 3.225393e-04	k: 732	n:2440000
KS ci ratio: 8.672567e-03	ci left: 7.692675e-02	ci right 7.759720e-02	k: 188518	n:2440000
MAST1   2440000 perm   3092 sec   (789 perm/sec)   p_kst 7.726148e-02   p_cons 3.000000e-04   p_joint 4.192623e-04

Joint ci ratio: 1.223549e-01	ci left: 3.931490e-04	ci right 4.447785e-04	k: 1025	n:2450000
Cons ci ratio: 1.446681e-01	ci left: 2.779169e-04	ci right 3.216457e-04	k: 733	n:2450000
KS ci ratio: 8.654667e-03	ci left: 7.693044e-02	ci right 7.759954e-02	k: 189298	n:2450000
MAST1   2450000 perm   3110 sec   (788 perm/sec)   p_kst 7.726449e-02   p_cons 2.991837e-04   p_joint 4.183673e-04

Joint ci ratio: 1.221171e-01	ci left: 3.931271e-04	ci right 4.446462e-04	k: 1029	n:2460000
Cons ci ratio: 1.444715e-01	ci left: 2.775708e-04	ci right 3.211806e-04	k: 735	n:2460000
KS ci ratio: 8.636286e-03	ci left: 7.694384e-02	ci right 7.761163e-02	k: 190102	n:2460000
MAST1   2460000 perm   3129 sec   (786 perm/sec)   p_kst 7.727724e-02   p_cons 2.987805e-04   p_joint 4.182927e-04

Joint ci ratio: 1.219397e-01	ci left: 3.927130e-04	ci right 4.440976e-04	k: 1032	n:2470000
Cons ci ratio: 1.443735e-01	ci left: 2.768372e-04	ci right 3.202998e-04	k: 736	n:2470000
KS ci ratio: 8.618805e-03	ci left: 7.694420e-02	ci right 7.761063e-02	k: 190874	n:2470000
MAST1   2470000 perm   3148 sec   (785 perm/sec)   p_kst 7.727692e-02   p_cons 2.979757e-04   p_joint 4.178138e-04

Joint ci ratio: 1.218218e-01	ci left: 3.919113e-04	ci right 4.431380e-04	k: 1034	n:2480000
Cons ci ratio: 1.443736e-01	ci left: 2.757210e-04	ci right 3.190083e-04	k: 736	n:2480000
KS ci ratio: 8.601430e-03	ci left: 7.694457e-02	ci right 7.760965e-02	k: 191646	n:2480000
MAST1   2480000 perm   3168 sec   (783 perm/sec)   p_kst 7.727661e-02   p_cons 2.967742e-04   p_joint 4.169355e-04

Joint ci ratio: 1.215871e-01	ci left: 3.918949e-04	ci right 4.430136e-04	k: 1038	n:2490000
Cons ci ratio: 1.440806e-01	ci left: 2.757750e-04	ci right 3.189754e-04	k: 739	n:2490000
KS ci ratio: 8.583724e-03	ci left: 7.695214e-02	ci right 7.761591e-02	k: 192436	n:2490000
MAST1   2490000 perm   3187 sec   (781 perm/sec)   p_kst 7.728353e-02   p_cons 2.967871e-04   p_joint 4.168675e-04

Joint ci ratio: 1.212375e-01	ci left: 3.926544e-04	ci right 4.437144e-04	k: 1044	n:2500000
Cons ci ratio: 1.437895e-01	ci left: 2.758287e-04	ci right 3.189427e-04	k: 742	n:2500000
KS ci ratio: 8.566560e-03	ci left: 7.695247e-02	ci right 7.761491e-02	k: 193208	n:2500000
MAST1   2500000 perm   3207 sec   (780 perm/sec)   p_kst 7.728320e-02   p_cons 2.968000e-04   p_joint 4.176000e-04

Joint ci ratio: 1.211796e-01	ci left: 3.914764e-04	ci right 4.423571e-04	k: 1045	n:2510000
Cons ci ratio: 1.437895e-01	ci left: 2.747297e-04	ci right 3.176720e-04	k: 742	n:2510000
KS ci ratio: 8.550310e-03	ci left: 7.693928e-02	ci right 7.760034e-02	k: 193946	n:2510000
MAST1   2510000 perm   3226 sec   (778 perm/sec)   p_kst 7.726932e-02   p_cons 2.956175e-04   p_joint 4.163347e-04

Joint ci ratio: 1.204903e-01	ci left: 3.945409e-04	ci right 4.455074e-04	k: 1057	n:2520000
Cons ci ratio: 1.433081e-01	ci left: 2.755524e-04	ci right 3.184667e-04	k: 747	n:2520000
KS ci ratio: 8.532893e-03	ci left: 7.694718e-02	ci right 7.760696e-02	k: 194737	n:2520000
MAST1   2520000 perm   3246 sec   (776 perm/sec)   p_kst 7.727659e-02   p_cons 2.964286e-04   p_joint 4.194444e-04

Joint ci ratio: 1.203198e-01	ci left: 3.941315e-04	ci right 4.449680e-04	k: 1060	n:2530000
Cons ci ratio: 1.433082e-01	ci left: 2.744633e-04	ci right 3.172080e-04	k: 747	n:2530000
KS ci ratio: 8.515795e-03	ci left: 7.695148e-02	ci right 7.760997e-02	k: 195519	n:2530000
MAST1   2530000 perm   3265 sec   (775 perm/sec)   p_kst 7.728024e-02   p_cons 2.952569e-04   p_joint 4.189723e-04

Joint ci ratio: 1.198687e-01	ci left: 3.956348e-04	ci right 4.464603e-04	k: 1068	n:2540000
Cons ci ratio: 1.425478e-01	ci left: 2.764197e-04	ci right 3.192213e-04	k: 755	n:2540000
KS ci ratio: 8.499199e-03	ci left: 7.694906e-02	ci right 7.760624e-02	k: 196284	n:2540000
MAST1   2540000 perm   3285 sec   (773 perm/sec)   p_kst 7.727717e-02   p_cons 2.972441e-04   p_joint 4.204724e-04

Joint ci ratio: 1.195337e-01	ci left: 3.963658e-04	ci right 4.471328e-04	k: 1074	n:2550000
Cons ci ratio: 1.422658e-01	ci left: 2.764703e-04	ci right 3.191878e-04	k: 758	n:2550000
KS ci ratio: 8.483002e-03	ci left: 7.694157e-02	ci right 7.759743e-02	k: 197036	n:2550000
MAST1   2550000 perm   3305 sec   (772 perm/sec)   p_kst 7.726902e-02   p_cons 2.972549e-04   p_joint 4.211765e-04

Joint ci ratio: 1.192014e-01	ci left: 3.970913e-04	ci right 4.477999e-04	k: 1080	n:2560000
Cons ci ratio: 1.418924e-01	ci left: 2.768973e-04	ci right 3.195589e-04	k: 762	n:2560000
KS ci ratio: 8.465970e-03	ci left: 7.694974e-02	ci right 7.760434e-02	k: 197828	n:2560000
MAST1   2560000 perm   3325 sec   (770 perm/sec)   p_kst 7.727656e-02   p_cons 2.976563e-04   p_joint 4.218750e-04

Joint ci ratio: 1.190914e-01	ci left: 3.963012e-04	ci right 4.468589e-04	k: 1082	n:2570000
Cons ci ratio: 1.416142e-01	ci left: 2.769458e-04	ci right 3.195242e-04	k: 765	n:2570000
KS ci ratio: 8.449339e-03	ci left: 7.695280e-02	ci right 7.760613e-02	k: 198607	n:2570000
MAST1   2570000 perm   3344 sec   (768 perm/sec)   p_kst 7.727899e-02   p_cons 2.976654e-04   p_joint 4.210117e-04

Joint ci ratio: 1.188174e-01	ci left: 3.966455e-04	ci right 4.471225e-04	k: 1087	n:2580000
Cons ci ratio: 1.413377e-01	ci left: 2.769940e-04	ci right 3.194897e-04	k: 768	n:2580000
KS ci ratio: 8.432210e-03	ci left: 7.696589e-02	ci right 7.761801e-02	k: 199412	n:2580000
MAST1   2580000 perm   3364 sec   (767 perm/sec)   p_kst 7.729147e-02   p_cons 2.976744e-04   p_joint 4.213178e-04

Joint ci ratio: 1.212965e-01	ci left: 3.786355e-04	ci right 4.278981e-04	k: 1043	n:2590000
Cons ci ratio: 1.408804e-01	ci left: 2.777868e-04	ci right 3.202547e-04	k: 773	n:2590000
KS ci ratio: 8.416598e-03	ci left: 7.695499e-02	ci right 7.760580e-02	k: 200155	n:2590000
MAST1   2590000 perm   3384 sec   (765 perm/sec)   p_kst 7.727992e-02   p_cons 2.984556e-04   p_joint 4.027027e-04

Joint ci ratio: 1.211805e-01	ci left: 3.779251e-04	ci right 4.270449e-04	k: 1045	n:2600000
Cons ci ratio: 1.406988e-01	ci left: 2.774606e-04	ci right 3.198193e-04	k: 775	n:2600000
KS ci ratio: 8.401299e-03	ci left: 7.694034e-02	ci right 7.758984e-02	k: 200888	n:2600000
MAST1   2600000 perm   3404 sec   (764 perm/sec)   p_kst 7.726462e-02   p_cons 2.980769e-04   p_joint 4.019231e-04

Joint ci ratio: 1.210649e-01	ci left: 3.772202e-04	ci right 4.261982e-04	k: 1047	n:2610000
Cons ci ratio: 1.405178e-01	ci left: 2.771368e-04	ci right 3.193871e-04	k: 777	n:2610000
KS ci ratio: 8.385654e-03	ci left: 7.693306e-02	ci right 7.758128e-02	k: 201640	n:2610000
MAST1   2610000 perm   3424 sec   (762 perm/sec)   p_kst 7.725670e-02   p_cons 2.977011e-04   p_joint 4.011494e-04

Joint ci ratio: 1.208920e-01	ci left: 3.768908e-04	ci right 4.257512e-04	k: 1050	n:2620000
Cons ci ratio: 1.401580e-01	ci left: 2.775522e-04	ci right 3.197484e-04	k: 781	n:2620000
KS ci ratio: 8.369223e-03	ci left: 7.694070e-02	ci right 7.758771e-02	k: 202431	n:2620000
MAST1   2620000 perm   3444 sec   (761 perm/sec)   p_kst 7.726374e-02   p_cons 2.980916e-04   p_joint 4.007634e-04

Joint ci ratio: 1.206626e-01	ci left: 3.769327e-04	ci right 4.256992e-04	k: 1054	n:2630000
Cons ci ratio: 1.398899e-01	ci left: 2.775976e-04	ci right 3.197132e-04	k: 784	n:2630000
KS ci ratio: 8.353845e-03	ci left: 7.693197e-02	ci right 7.757771e-02	k: 203179	n:2630000
MAST1   2630000 perm   3465 sec   (759 perm/sec)   p_kst 7.725437e-02   p_cons 2.980989e-04   p_joint 4.007605e-04

Joint ci ratio: 1.203209e-01	ci left: 3.777092e-04	ci right 4.264279e-04	k: 1060	n:2640000
Cons ci ratio: 1.396233e-01	ci left: 2.776427e-04	ci right 3.196783e-04	k: 787	n:2640000
KS ci ratio: 8.337578e-03	ci left: 7.693993e-02	ci right 7.758448e-02	k: 203971	n:2640000
MAST1   2640000 perm   3485 sec   (757 perm/sec)   p_kst 7.726174e-02   p_cons 2.981061e-04   p_joint 4.015152e-04

Joint ci ratio: 1.215302e-01	ci left: 3.685989e-04	ci right 4.166548e-04	k: 1039	n:2650000
Cons ci ratio: 1.391824e-01	ci left: 2.784160e-04	ci right 3.204245e-04	k: 792	n:2650000
KS ci ratio: 8.322991e-03	ci left: 7.692072e-02	ci right 7.756397e-02	k: 204691	n:2650000
MAST1   2650000 perm   3506 sec   (756 perm/sec)   p_kst 7.724189e-02   p_cons 2.988679e-04   p_joint 3.920755e-04

Joint ci ratio: 1.213553e-01	ci left: 3.683068e-04	ci right 4.162505e-04	k: 1042	n:2660000
Cons ci ratio: 1.390948e-01	ci left: 2.777321e-04	ci right 3.196089e-04	k: 793	n:2660000
KS ci ratio: 8.307494e-03	ci left: 7.691854e-02	ci right 7.756057e-02	k: 205456	n:2660000
MAST1   2660000 perm   3526 sec   (754 perm/sec)   p_kst 7.723910e-02   p_cons 2.981203e-04   p_joint 3.917293e-04

Joint ci ratio: 1.210654e-01	ci left: 3.687432e-04	ci right 4.166209e-04	k: 1047	n:2670000
Cons ci ratio: 1.389200e-01	ci left: 2.774149e-04	ci right 3.191870e-04	k: 795	n:2670000
KS ci ratio: 8.291495e-03	ci left: 7.692647e-02	ci right 7.756733e-02	k: 206248	n:2670000
MAST1   2670000 perm   3547 sec   (753 perm/sec)   p_kst 7.724644e-02   p_cons 2.977528e-04   p_joint 3.921348e-04

Joint ci ratio: 1.209501e-01	ci left: 3.680910e-04	ci right 4.158352e-04	k: 1049	n:2680000
Cons ci ratio: 1.387458e-01	ci left: 2.771002e-04	ci right 3.187682e-04	k: 797	n:2680000
KS ci ratio: 8.277083e-03	ci left: 7.690865e-02	ci right 7.754823e-02	k: 206971	n:2680000
MAST1   2680000 perm   3567 sec   (751 perm/sec)   p_kst 7.722799e-02   p_cons 2.973881e-04   p_joint 3.914179e-04

Joint ci ratio: 1.206631e-01	ci left: 3.685252e-04	ci right 4.162042e-04	k: 1054	n:2690000
Cons ci ratio: 1.384857e-01	ci left: 2.771466e-04	ci right 3.187370e-04	k: 800	n:2690000
KS ci ratio: 8.261884e-03	ci left: 7.690580e-02	ci right 7.754418e-02	k: 207734	n:2690000
MAST1   2690000 perm   3588 sec   (750 perm/sec)   p_kst 7.722454e-02   p_cons 2.973978e-04   p_joint 3.918216e-04

Joint ci ratio: 1.188732e-01	ci left: 3.786572e-04	ci right 4.268693e-04	k: 1086	n:2700000
Cons ci ratio: 1.378845e-01	ci left: 2.786231e-04	ci right 3.202387e-04	k: 807	n:2700000
KS ci ratio: 8.246040e-03	ci left: 7.691554e-02	ci right 7.755277e-02	k: 208531	n:2700000
MAST1   2700000 perm   3609 sec   (748 perm/sec)   p_kst 7.723370e-02   p_cons 2.988889e-04   p_joint 4.022222e-04

Joint ci ratio: 1.186007e-01	ci left: 3.790502e-04	ci right 4.271939e-04	k: 1091	n:2710000
Cons ci ratio: 1.375444e-01	ci left: 2.790202e-04	ci right 3.205838e-04	k: 811	n:2710000
KS ci ratio: 8.231607e-03	ci left: 7.690238e-02	ci right 7.753838e-02	k: 209266	n:2710000
MAST1   2710000 perm   3630 sec   (747 perm/sec)   p_kst 7.721993e-02   p_cons 2.992620e-04   p_joint 4.025830e-04

Joint ci ratio: 1.184381e-01	ci left: 3.787269e-04	ci right 4.267590e-04	k: 1094	n:2720000
Cons ci ratio: 1.374598e-01	ci left: 2.783493e-04	ci right 3.197855e-04	k: 812	n:2720000
KS ci ratio: 8.216466e-03	ci left: 7.690289e-02	ci right 7.753772e-02	k: 210038	n:2720000
MAST1   2720000 perm   3650 sec   (745 perm/sec)   p_kst 7.721985e-02   p_cons 2.985294e-04   p_joint 4.022059e-04

Joint ci ratio: 1.182224e-01	ci left: 3.787614e-04	ci right 4.267043e-04	k: 1098	n:2730000
Cons ci ratio: 1.372069e-01	ci left: 2.783909e-04	ci right 3.197508e-04	k: 815	n:2730000
KS ci ratio: 8.200502e-03	ci left: 7.691912e-02	ci right 7.755284e-02	k: 210853	n:2730000
MAST1   2730000 perm   3671 sec   (744 perm/sec)   p_kst 7.723553e-02   p_cons 2.985348e-04   p_joint 4.021978e-04

Joint ci ratio: 1.179543e-01	ci left: 3.791500e-04	ci right 4.270257e-04	k: 1103	n:2740000
Cons ci ratio: 1.368718e-01	ci left: 2.787847e-04	ci right 3.200936e-04	k: 819	n:2740000
KS ci ratio: 8.186537e-03	ci left: 7.690208e-02	ci right 7.753458e-02	k: 211577	n:2740000
MAST1   2740000 perm   3692 sec   (742 perm/sec)   p_kst 7.721788e-02   p_cons 2.989051e-04   p_joint 4.025547e-04

Joint ci ratio: 1.175292e-01	ci left: 3.805947e-04	ci right 4.284676e-04	k: 1111	n:2750000
Cons ci ratio: 1.364564e-01	ci left: 2.795269e-04	ci right 3.208100e-04	k: 824	n:2750000
KS ci ratio: 8.171747e-03	ci left: 7.690077e-02	ci right 7.753212e-02	k: 212344	n:2750000
MAST1   2750000 perm   3713 sec   (741 perm/sec)   p_kst 7.721600e-02   p_cons 2.996364e-04   p_joint 4.040000e-04

Joint ci ratio: 1.173710e-01	ci left: 3.802708e-04	ci right 4.280340e-04	k: 1114	n:2760000
Cons ci ratio: 1.362090e-01	ci left: 2.795641e-04	ci right 3.207716e-04	k: 827	n:2760000
KS ci ratio: 8.157597e-03	ci left: 7.688971e-02	ci right 7.751987e-02	k: 213084	n:2760000
MAST1   2760000 perm   3734 sec   (739 perm/sec)   p_kst 7.720435e-02   p_cons 2.996377e-04   p_joint 4.036232e-04

Joint ci ratio: 1.144802e-01	ci left: 3.988792e-04	ci right 4.476624e-04	k: 1171	n:2770000
Cons ci ratio: 1.357995e-01	ci left: 2.802984e-04	ci right 3.214800e-04	k: 832	n:2770000
KS ci ratio: 8.142344e-03	ci left: 7.689928e-02	ci right 7.752832e-02	k: 213881	n:2770000
MAST1   2770000 perm   3756 sec   (738 perm/sec)   p_kst 7.721336e-02   p_cons 3.003610e-04   p_joint 4.227437e-04

Joint ci ratio: 1.182767e-01	ci left: 3.716000e-04	ci right 4.186595e-04	k: 1097	n:2780000
Cons ci ratio: 1.355556e-01	ci left: 2.803327e-04	ci right 3.214394e-04	k: 835	n:2780000
KS ci ratio: 8.127874e-03	ci left: 7.689656e-02	ci right 7.752446e-02	k: 214644	n:2780000
MAST1   2780000 perm   3777 sec   (736 perm/sec)   p_kst 7.721007e-02   p_cons 3.003597e-04   p_joint 3.946043e-04

Joint ci ratio: 1.181691e-01	ci left: 3.709638e-04	ci right 4.178970e-04	k: 1099	n:2790000
Cons ci ratio: 1.353131e-01	ci left: 2.803667e-04	ci right 3.213989e-04	k: 838	n:2790000
KS ci ratio: 8.113419e-03	ci left: 7.689494e-02	ci right 7.752171e-02	k: 215410	n:2790000
MAST1   2790000 perm   3799 sec   (734 perm/sec)   p_kst 7.720789e-02   p_cons 3.003584e-04   p_joint 3.939068e-04

Joint ci ratio: 1.179549e-01	ci left: 3.710253e-04	ci right 4.178752e-04	k: 1103	n:2800000
Cons ci ratio: 1.351521e-01	ci left: 2.800555e-04	ci right 3.209895e-04	k: 840	n:2800000
KS ci ratio: 8.098717e-03	ci left: 7.689904e-02	ci right 7.752470e-02	k: 216192	n:2800000
MAST1   2800000 perm   3820 sec   (733 perm/sec)   p_kst 7.721143e-02   p_cons 3.000000e-04   p_joint 3.939286e-04

Joint ci ratio: 1.176886e-01	ci left: 3.714318e-04	ci right 4.182199e-04	k: 1108	n:2810000
Cons ci ratio: 1.349117e-01	ci left: 2.800905e-04	ci right 3.209509e-04	k: 843	n:2810000
KS ci ratio: 8.084154e-03	ci left: 7.690204e-02	ci right 7.752659e-02	k: 216971	n:2810000
MAST1   2810000 perm   3841 sec   (732 perm/sec)   p_kst 7.721388e-02   p_cons 3.000000e-04   p_joint 3.943060e-04

Joint ci ratio: 1.174242e-01	ci left: 3.718356e-04	ci right 4.185620e-04	k: 1113	n:2820000
Cons ci ratio: 1.345138e-01	ci left: 2.808105e-04	ci right 3.216455e-04	k: 848	n:2820000
KS ci ratio: 8.070253e-03	ci left: 7.689475e-02	ci right 7.751817e-02	k: 217721	n:2820000
MAST1   2820000 perm   3863 sec   (730 perm/sec)   p_kst 7.720603e-02   p_cons 3.007092e-04   p_joint 3.946809e-04

Joint ci ratio: 1.143831e-01	ci left: 3.911088e-04	ci right 4.388984e-04	k: 1173	n:2830000
Cons ci ratio: 1.342767e-01	ci left: 2.808427e-04	ci right 3.216046e-04	k: 851	n:2830000
KS ci ratio: 8.056662e-03	ci left: 7.688329e-02	ci right 7.750556e-02	k: 218459	n:2830000
MAST1   2830000 perm   3884 sec   (729 perm/sec)   p_kst 7.719399e-02   p_cons 3.007067e-04   p_joint 4.144876e-04

Joint ci ratio: 1.142373e-01	ci left: 3.907578e-04	ci right 4.384395e-04	k: 1176	n:2840000
Cons ci ratio: 1.340410e-01	ci left: 2.808747e-04	ci right 3.215640e-04	k: 854	n:2840000
KS ci ratio: 8.042484e-03	ci left: 7.688351e-02	ci right 7.750468e-02	k: 219230	n:2840000
MAST1   2840000 perm   3905 sec   (727 perm/sec)   p_kst 7.719366e-02   p_cons 3.007042e-04   p_joint 4.140845e-04

Joint ci ratio: 1.139471e-01	ci left: 3.914319e-04	ci right 4.390664e-04	k: 1182	n:2850000
Cons ci ratio: 1.338064e-01	ci left: 2.809065e-04	ci right 3.215236e-04	k: 857	n:2850000
KS ci ratio: 8.027551e-03	ci left: 7.689843e-02	ci right 7.751857e-02	k: 220043	n:2850000
MAST1   2850000 perm   3927 sec   (726 perm/sec)   p_kst 7.720807e-02   p_cons 3.007018e-04   p_joint 4.147368e-04

Joint ci ratio: 1.162815e-01	ci left: 3.741026e-04	ci right 4.206250e-04	k: 1135	n:2860000
Cons ci ratio: 1.334956e-01	ci left: 2.812762e-04	ci right 3.218447e-04	k: 861	n:2860000
KS ci ratio: 8.014174e-03	ci left: 7.688708e-02	ci right 7.750608e-02	k: 220781	n:2860000
MAST1   2860000 perm   3949 sec   (724 perm/sec)   p_kst 7.719615e-02   p_cons 3.010490e-04   p_joint 3.968531e-04

Joint ci ratio: 1.159756e-01	ci left: 3.748290e-04	ci right 4.213107e-04	k: 1141	n:2870000
Cons ci ratio: 1.329567e-01	ci left: 2.826539e-04	ci right 3.232435e-04	k: 868	n:2870000
KS ci ratio: 8.000650e-03	ci left: 7.687963e-02	ci right 7.749753e-02	k: 221530	n:2870000
MAST1   2870000 perm   3971 sec   (723 perm/sec)   p_kst 7.718815e-02   p_cons 3.024390e-04   p_joint 3.975610e-04

Joint ci ratio: 1.158742e-01	ci left: 3.742018e-04	ci right 4.205624e-04	k: 1143	n:2880000
Cons ci ratio: 1.328040e-01	ci left: 2.823438e-04	ci right 3.228387e-04	k: 870	n:2880000
KS ci ratio: 7.987368e-03	ci left: 7.686912e-02	ci right 7.748590e-02	k: 222270	n:2880000
MAST1   2880000 perm   3993 sec   (721 perm/sec)   p_kst 7.717708e-02   p_cons 3.020833e-04   p_joint 3.968750e-04

Joint ci ratio: 1.156721e-01	ci left: 3.742510e-04	ci right 4.205313e-04	k: 1147	n:2890000
Cons ci ratio: 1.325759e-01	ci left: 2.823704e-04	ci right 3.227941e-04	k: 873	n:2890000
KS ci ratio: 7.972952e-03	ci left: 7.688009e-02	ci right 7.749584e-02	k: 223072	n:2890000
MAST1   2890000 perm   4015 sec   (720 perm/sec)   p_kst 7.718754e-02   p_cons 3.020761e-04   p_joint 3.968858e-04

Joint ci ratio: 1.156722e-01	ci left: 3.729605e-04	ci right 4.190812e-04	k: 1147	n:2900000
Cons ci ratio: 1.325002e-01	ci left: 2.817301e-04	ci right 3.220373e-04	k: 874	n:2900000
KS ci ratio: 7.959037e-03	ci left: 7.688342e-02	ci right 7.749812e-02	k: 223852	n:2900000
MAST1   2900000 perm   4037 sec   (718 perm/sec)   p_kst 7.719034e-02   p_cons 3.013793e-04   p_joint 3.955172e-04

Joint ci ratio: 1.156219e-01	ci left: 3.720125e-04	ci right 4.179947e-04	k: 1148	n:2910000
Cons ci ratio: 1.324246e-01	ci left: 2.810942e-04	ci right 3.212857e-04	k: 875	n:2910000
KS ci ratio: 7.945617e-03	ci left: 7.687918e-02	ci right 7.749280e-02	k: 224610	n:2910000
MAST1   2910000 perm   4059 sec   (717 perm/sec)   p_kst 7.718557e-02   p_cons 3.006873e-04   p_joint 3.945017e-04

Joint ci ratio: 1.153712e-01	ci left: 3.724013e-04	ci right 4.183249e-04	k: 1153	n:2920000
Cons ci ratio: 1.321984e-01	ci left: 2.811250e-04	ci right 3.212468e-04	k: 878	n:2920000
KS ci ratio: 7.931920e-03	ci left: 7.688112e-02	ci right 7.749369e-02	k: 225386	n:2920000
MAST1   2920000 perm   4082 sec   (715 perm/sec)   p_kst 7.718699e-02   p_cons 3.006849e-04   p_joint 3.948630e-04

Joint ci ratio: 1.151220e-01	ci left: 3.727877e-04	ci right 4.186529e-04	k: 1158	n:2930000
Cons ci ratio: 1.318986e-01	ci left: 2.814856e-04	ci right 3.215606e-04	k: 882	n:2930000
KS ci ratio: 7.918807e-03	ci left: 7.687385e-02	ci right 7.748535e-02	k: 226135	n:2930000
MAST1   2930000 perm   4104 sec   (714 perm/sec)   p_kst 7.717918e-02   p_cons 3.010239e-04   p_joint 3.952218e-04

Joint ci ratio: 1.149733e-01	ci left: 3.725107e-04	ci right 4.182786e-04	k: 1161	n:2940000
Cons ci ratio: 1.317495e-01	ci left: 2.811860e-04	ci right 3.211696e-04	k: 884	n:2940000
KS ci ratio: 7.905136e-03	ci left: 7.687783e-02	ci right 7.748830e-02	k: 226917	n:2940000
MAST1   2940000 perm   4127 sec   (712 perm/sec)   p_kst 7.718265e-02   p_cons 3.006803e-04   p_joint 3.948980e-04

Joint ci ratio: 1.328045e-01	ci left: 2.756441e-04	ci right 3.151782e-04	k: 870	n:2950000
Cons ci ratio: 1.316009e-01	ci left: 2.808885e-04	ci right 3.207811e-04	k: 886	n:2950000
KS ci ratio: 7.892192e-03	ci left: 7.686995e-02	ci right 7.747935e-02	k: 227664	n:2950000
MAST1   2950000 perm   4149 sec   (711 perm/sec)   p_kst 7.717424e-02   p_cons 3.003390e-04   p_joint 2.949153e-04

Joint ci ratio: 1.326523e-01	ci left: 2.753661e-04	ci right 3.148115e-04	k: 872	n:2960000
Cons ci ratio: 1.314528e-01	ci left: 2.805930e-04	ci right 3.203953e-04	k: 888	n:2960000
KS ci ratio: 7.878714e-03	ci left: 7.687291e-02	ci right 7.748129e-02	k: 228443	n:2960000
MAST1   2960000 perm   4172 sec   (709 perm/sec)   p_kst 7.717669e-02   p_cons 3.000000e-04   p_joint 2.945946e-04

Joint ci ratio: 1.325006e-01	ci left: 2.750900e-04	ci right 3.144473e-04	k: 874	n:2970000
Cons ci ratio: 1.311581e-01	ci left: 2.809508e-04	ci right 3.207076e-04	k: 892	n:2970000
KS ci ratio: 7.865379e-03	ci left: 7.687451e-02	ci right 7.748187e-02	k: 229218	n:2970000
MAST1   2970000 perm   4195 sec   (708 perm/sec)   p_kst 7.717778e-02   p_cons 3.003367e-04   p_joint 2.942761e-04

Joint ci ratio: 1.321236e-01	ci left: 2.757892e-04	ci right 3.151254e-04	k: 879	n:2980000
Cons ci ratio: 1.308653e-01	ci left: 2.813063e-04	ci right 3.210176e-04	k: 896	n:2980000
KS ci ratio: 7.852796e-03	ci left: 7.686370e-02	ci right 7.747000e-02	k: 229956	n:2980000
MAST1   2980000 perm   4217 sec   (707 perm/sec)   p_kst 7.716644e-02   p_cons 3.006711e-04   p_joint 2.949664e-04

Joint ci ratio: 1.318244e-01	ci left: 2.761604e-04	ci right 3.154534e-04	k: 883	n:2990000
Cons ci ratio: 1.306470e-01	ci left: 2.813360e-04	ci right 3.209801e-04	k: 899	n:2990000
KS ci ratio: 7.839776e-03	ci left: 7.686199e-02	ci right 7.746726e-02	k: 230721	n:2990000
MAST1   2990000 perm   4240 sec   (705 perm/sec)   p_kst 7.716421e-02   p_cons 3.006689e-04   p_joint 2.953177e-04

Joint ci ratio: 1.315271e-01	ci left: 2.765293e-04	ci right 3.157791e-04	k: 887	n:3000000
Cons ci ratio: 1.302855e-01	ci left: 2.820105e-04	ci right 3.216312e-04	k: 904	n:3000000
KS ci ratio: 7.826545e-03	ci left: 7.686527e-02	ci right 7.746955e-02	k: 231501	n:3000000
MAST1   3000000 perm   4263 sec   (704 perm/sec)   p_kst 7.716700e-02   p_cons 3.013333e-04   p_joint 2.956667e-04

Joint ci ratio: 1.313055e-01	ci left: 2.765745e-04	ci right 3.157595e-04	k: 890	n:3010000
Cons ci ratio: 1.299985e-01	ci left: 2.823592e-04	ci right 3.219348e-04	k: 908	n:3010000
KS ci ratio: 7.813838e-03	ci left: 7.686024e-02	ci right 7.746349e-02	k: 232256	n:3010000
MAST1   3010000 perm   4285 sec   (702 perm/sec)   p_kst 7.716146e-02   p_cons 3.016611e-04   p_joint 2.956811e-04

Joint ci ratio: 1.310850e-01	ci left: 2.766195e-04	ci right 3.157399e-04	k: 893	n:3020000
Cons ci ratio: 1.298558e-01	ci left: 2.820650e-04	ci right 3.215526e-04	k: 910	n:3020000
KS ci ratio: 7.801101e-03	ci left: 7.685690e-02	ci right 7.745914e-02	k: 233016	n:3020000
MAST1   3020000 perm   4308 sec   (701 perm/sec)   p_kst 7.715762e-02   p_cons 3.013245e-04   p_joint 2.956954e-04

Joint ci ratio: 1.131854e-01	ci left: 3.733089e-04	ci right 4.184140e-04	k: 1198	n:3030000
Cons ci ratio: 1.297135e-01	ci left: 2.817727e-04	ci right 3.211728e-04	k: 912	n:3030000
KS ci ratio: 7.788914e-03	ci left: 7.684469e-02	ci right 7.744589e-02	k: 233749	n:3030000
MAST1   3030000 perm   4331 sec   (700 perm/sec)   p_kst 7.714488e-02   p_cons 3.009901e-04   p_joint 3.953795e-04

Joint ci ratio: 1.129971e-01	ci left: 3.733594e-04	ci right 4.183906e-04	k: 1202	n:3040000
Cons ci ratio: 1.295009e-01	ci left: 2.818006e-04	ci right 3.211351e-04	k: 915	n:3040000
KS ci ratio: 7.776316e-03	ci left: 7.684110e-02	ci right 7.744129e-02	k: 234508	n:3040000
MAST1   3040000 perm   4355 sec   (698 perm/sec)   p_kst 7.714079e-02   p_cons 3.009868e-04   p_joint 3.953947e-04

Joint ci ratio: 1.127630e-01	ci left: 3.737284e-04	ci right 4.187044e-04	k: 1207	n:3050000
Cons ci ratio: 1.294303e-01	ci left: 2.811940e-04	ci right 3.204207e-04	k: 916	n:3050000
KS ci ratio: 7.763046e-03	ci left: 7.685095e-02	ci right 7.745018e-02	k: 235308	n:3050000
MAST1   3050000 perm   4378 sec   (697 perm/sec)   p_kst 7.715016e-02   p_cons 3.003279e-04   p_joint 3.957377e-04

Joint ci ratio: 1.126232e-01	ci left: 3.734598e-04	ci right 4.183442e-04	k: 1210	n:3060000
Cons ci ratio: 1.292191e-01	ci left: 2.812237e-04	ci right 3.203857e-04	k: 919	n:3060000
KS ci ratio: 7.750592e-03	ci left: 7.684703e-02	ci right 7.744527e-02	k: 236066	n:3060000
MAST1   3060000 perm   4401 sec   (695 perm/sec)   p_kst 7.714575e-02   p_cons 3.003268e-04   p_joint 3.954248e-04

Joint ci ratio: 1.302140e-01	ci left: 2.758953e-04	ci right 3.146340e-04	k: 905	n:3070000
Cons ci ratio: 1.291490e-01	ci left: 2.806229e-04	ci right 3.196784e-04	k: 920	n:3070000
KS ci ratio: 7.737665e-03	ci left: 7.685290e-02	ci right 7.745018e-02	k: 236854	n:3070000
MAST1   3070000 perm   4425 sec   (694 perm/sec)   p_kst 7.715114e-02   p_cons 2.996743e-04   p_joint 2.947883e-04

Joint ci ratio: 1.298562e-01	ci left: 2.765701e-04	ci right 3.152886e-04	k: 910	n:3080000
Cons ci ratio: 1.289392e-01	ci left: 2.806543e-04	ci right 3.196459e-04	k: 923	n:3080000
KS ci ratio: 7.725050e-03	ci left: 7.685419e-02	ci right 7.745050e-02	k: 237628	n:3080000
MAST1   3080000 perm   4449 sec   (692 perm/sec)   p_kst 7.715195e-02   p_cons 2.996753e-04   p_joint 2.954545e-04

Joint ci ratio: 1.295720e-01	ci left: 2.769276e-04	ci right 3.156047e-04	k: 914	n:3090000
Cons ci ratio: 1.286610e-01	ci left: 2.809989e-04	ci right 3.199476e-04	k: 927	n:3090000
KS ci ratio: 7.712549e-03	ci left: 7.685450e-02	ci right 7.744985e-02	k: 238399	n:3090000
MAST1   3090000 perm   4472 sec   (691 perm/sec)   p_kst 7.715178e-02   p_cons 3.000000e-04   p_joint 2.957929e-04

Joint ci ratio: 1.292194e-01	ci left: 2.775950e-04	ci right 3.162517e-04	k: 919	n:3100000
Cons ci ratio: 1.284535e-01	ci left: 2.810290e-04	ci right 3.199144e-04	k: 930	n:3100000
KS ci ratio: 7.700318e-03	ci left: 7.685095e-02	ci right 7.744532e-02	k: 239158	n:3100000
MAST1   3100000 perm   4495 sec   (690 perm/sec)   p_kst 7.714774e-02   p_cons 3.000000e-04   p_joint 2.964516e-04

Joint ci ratio: 1.289394e-01	ci left: 2.779470e-04	ci right 3.165625e-04	k: 923	n:3110000
Cons ci ratio: 1.283158e-01	ci left: 2.807478e-04	ci right 3.195494e-04	k: 932	n:3110000
KS ci ratio: 7.688266e-03	ci left: 7.684517e-02	ci right 7.743857e-02	k: 239910	n:3110000
MAST1   3110000 perm   4519 sec   (688 perm/sec)   p_kst 7.714148e-02   p_cons 2.996785e-04   p_joint 2.967846e-04

Joint ci ratio: 1.285919e-01	ci left: 2.786071e-04	ci right 3.172020e-04	k: 928	n:3120000
Cons ci ratio: 1.279733e-01	ci left: 2.813992e-04	ci right 3.201791e-04	k: 937	n:3120000
KS ci ratio: 7.676046e-03	ci left: 7.684360e-02	ci right 7.743603e-02	k: 240675	n:3120000
MAST1   3120000 perm   4543 sec   (687 perm/sec)   p_kst 7.713942e-02   p_cons 3.003205e-04   p_joint 2.974359e-04

Joint ci ratio: 1.285227e-01	ci left: 2.780262e-04	ci right 3.165184e-04	k: 929	n:3130000
Cons ci ratio: 1.278371e-01	ci left: 2.811187e-04	ci right 3.198156e-04	k: 939	n:3130000
KS ci ratio: 7.664228e-03	ci left: 7.683565e-02	ci right 7.742711e-02	k: 241420	n:3130000
MAST1   3130000 perm   4566 sec   (685 perm/sec)   p_kst 7.713099e-02   p_cons 3.000000e-04   p_joint 2.968051e-04

Joint ci ratio: 1.281786e-01	ci left: 2.786820e-04	ci right 3.171538e-04	k: 934	n:3140000
Cons ci ratio: 1.276336e-01	ci left: 2.811483e-04	ci right 3.197830e-04	k: 942	n:3140000
KS ci ratio: 7.652705e-03	ci left: 7.682331e-02	ci right 7.741378e-02	k: 242151	n:3140000
MAST1   3140000 perm   4590 sec   (684 perm/sec)   p_kst 7.711815e-02   p_cons 3.000000e-04   p_joint 2.974522e-04

Joint ci ratio: 1.279735e-01	ci left: 2.787192e-04	ci right 3.171299e-04	k: 937	n:3150000
Cons ci ratio: 1.271624e-01	ci left: 2.824072e-04	ci right 3.210608e-04	k: 949	n:3150000
KS ci ratio: 7.640721e-03	ci left: 7.682055e-02	ci right 7.741007e-02	k: 242912	n:3150000
MAST1   3150000 perm   4614 sec   (683 perm/sec)   p_kst 7.711492e-02   p_cons 3.012698e-04   p_joint 2.974603e-04

Joint ci ratio: 1.276337e-01	ci left: 2.793688e-04	ci right 3.177591e-04	k: 942	n:3160000
Cons ci ratio: 1.270288e-01	ci left: 2.821263e-04	ci right 3.206978e-04	k: 951	n:3160000
KS ci ratio: 7.628625e-03	ci left: 7.682097e-02	ci right 7.740955e-02	k: 243683	n:3160000
MAST1   3160000 perm   4639 sec   (681 perm/sec)   p_kst 7.711487e-02   p_cons 3.009494e-04   p_joint 2.981013e-04

Joint ci ratio: 1.273638e-01	ci left: 2.797091e-04	ci right 3.180588e-04	k: 946	n:3170000
Cons ci ratio: 1.266965e-01	ci left: 2.827635e-04	ci right 3.213135e-04	k: 956	n:3170000
KS ci ratio: 7.616551e-03	ci left: 7.682201e-02	ci right 7.740967e-02	k: 244456	n:3170000
MAST1   3170000 perm   4666 sec   (679 perm/sec)   p_kst 7.711546e-02   p_cons 3.015773e-04   p_joint 2.984227e-04

Joint ci ratio: 1.270289e-01	ci left: 2.803519e-04	ci right 3.186809e-04	k: 951	n:3180000
Cons ci ratio: 1.265643e-01	ci left: 2.824833e-04	ci right 3.209519e-04	k: 958	n:3180000
KS ci ratio: 7.605157e-03	ci left: 7.681144e-02	ci right 7.739814e-02	k: 245192	n:3180000
MAST1   3180000 perm   4691 sec   (678 perm/sec)   p_kst 7.710440e-02   p_cons 3.012579e-04   p_joint 2.990566e-04

Joint ci ratio: 1.266966e-01	ci left: 2.809907e-04	ci right 3.192990e-04	k: 956	n:3190000
Cons ci ratio: 1.262356e-01	ci left: 2.831156e-04	ci right 3.215627e-04	k: 963	n:3190000
KS ci ratio: 7.593446e-03	ci left: 7.680782e-02	ci right 7.739358e-02	k: 245950	n:3190000
MAST1   3190000 perm   4715 sec   (677 perm/sec)   p_kst 7.710031e-02   p_cons 3.018809e-04   p_joint 2.996865e-04

Joint ci ratio: 1.264326e-01	ci left: 2.813230e-04	ci right 3.195907e-04	k: 960	n:3200000
Cons ci ratio: 1.261049e-01	ci left: 2.828362e-04	ci right 3.212026e-04	k: 965	n:3200000
KS ci ratio: 7.582121e-03	ci left: 7.679798e-02	ci right 7.738279e-02	k: 246688	n:3200000
MAST1   3200000 perm   4740 sec   (675 perm/sec)   p_kst 7.709000e-02   p_cons 3.015625e-04   p_joint 3.000000e-04

Joint ci ratio: 1.263013e-01	ci left: 2.810500e-04	ci right 3.192379e-04	k: 962	n:3210000
Cons ci ratio: 1.259095e-01	ci left: 2.828602e-04	ci right 3.211660e-04	k: 968	n:3210000
KS ci ratio: 7.570217e-03	ci left: 7.680002e-02	ci right 7.738392e-02	k: 247464	n:3210000
MAST1   3210000 perm   4764 sec   (674 perm/sec)   p_kst 7.709159e-02   p_cons 3.015576e-04   p_joint 2.996885e-04

Joint ci ratio: 1.260398e-01	ci left: 2.813802e-04	ci right 3.195279e-04	k: 966	n:3220000
Cons ci ratio: 1.257798e-01	ci left: 2.825833e-04	ci right 3.208092e-04	k: 970	n:3220000
KS ci ratio: 7.558617e-03	ci left: 7.679740e-02	ci right 7.738038e-02	k: 248225	n:3220000
MAST1   3220000 perm   4789 sec   (672 perm/sec)   p_kst 7.708851e-02   p_cons 3.012422e-04   p_joint 3.000000e-04

Joint ci ratio: 1.259096e-01	ci left: 2.811087e-04	ci right 3.191773e-04	k: 968	n:3230000
Cons ci ratio: 1.255859e-01	ci left: 2.826080e-04	ci right 3.207740e-04	k: 973	n:3230000
KS ci ratio: 7.546643e-03	ci left: 7.680283e-02	ci right 7.738493e-02	k: 249012	n:3230000
MAST1   3230000 perm   4813 sec   (671 perm/sec)   p_kst 7.709350e-02   p_cons 3.012384e-04   p_joint 2.996904e-04

Joint ci ratio: 1.257799e-01	ci left: 2.808389e-04	ci right 3.188289e-04	k: 970	n:3240000
Cons ci ratio: 1.255216e-01	ci left: 2.820347e-04	ci right 3.201023e-04	k: 974	n:3240000
KS ci ratio: 7.535019e-03	ci left: 7.680268e-02	ci right 7.738388e-02	k: 249781	n:3240000
MAST1   3240000 perm   4838 sec   (670 perm/sec)   p_kst 7.709290e-02   p_cons 3.006173e-04   p_joint 2.993827e-04

Joint ci ratio: 1.257800e-01	ci left: 2.799748e-04	ci right 3.178479e-04	k: 970	n:3250000
Cons ci ratio: 1.253289e-01	ci left: 2.820610e-04	ci right 3.200694e-04	k: 977	n:3250000
KS ci ratio: 7.523140e-03	ci left: 7.680837e-02	ci right 7.738869e-02	k: 250569	n:3250000
MAST1   3250000 perm   4863 sec   (668 perm/sec)   p_kst 7.709815e-02   p_cons 3.006154e-04   p_joint 2.984615e-04

Joint ci ratio: 1.255217e-01	ci left: 2.803044e-04	ci right 3.181385e-04	k: 974	n:3260000
Cons ci ratio: 1.250097e-01	ci left: 2.826815e-04	ci right 3.206693e-04	k: 982	n:3260000
KS ci ratio: 7.511609e-03	ci left: 7.680852e-02	ci right 7.738794e-02	k: 251339	n:3260000
MAST1   3260000 perm   4888 sec   (667 perm/sec)   p_kst 7.709785e-02   p_cons 3.012270e-04   p_joint 2.987730e-04

Joint ci ratio: 1.272301e-01	ci left: 2.717474e-04	ci right 3.089634e-04	k: 948	n:3270000
Cons ci ratio: 1.248194e-01	ci left: 2.827058e-04	ci right 3.206347e-04	k: 985	n:3270000
KS ci ratio: 7.500033e-03	ci left: 7.681049e-02	ci right 7.738904e-02	k: 252115	n:3270000
MAST1   3270000 perm   4912 sec   (666 perm/sec)   p_kst 7.709939e-02   p_cons 3.012232e-04   p_joint 2.899083e-04

Joint ci ratio: 1.083252e-01	ci left: 3.774635e-04	ci right 4.209874e-04	k: 1308	n:3280000
Cons ci ratio: 1.247562e-01	ci left: 2.821393e-04	ci right 3.199716e-04	k: 986	n:3280000
KS ci ratio: 7.488945e-03	ci left: 7.680424e-02	ci right 7.738188e-02	k: 252864	n:3280000
MAST1   3280000 perm   4937 sec   (664 perm/sec)   p_kst 7.709268e-02   p_cons 3.006098e-04   p_joint 3.987805e-04

Joint ci ratio: 1.175860e-01	ci left: 3.178307e-04	ci right 3.578294e-04	k: 1110	n:3290000
Cons ci ratio: 1.245041e-01	ci left: 2.824596e-04	ci right 3.202527e-04	k: 990	n:3290000
KS ci ratio: 7.478081e-03	ci left: 7.679468e-02	ci right 7.737141e-02	k: 253602	n:3290000
MAST1   3290000 perm   4962 sec   (663 perm/sec)   p_kst 7.708267e-02   p_cons 3.009119e-04   p_joint 3.373860e-04

Joint ci ratio: 1.173749e-01	ci left: 3.180440e-04	ci right 3.579928e-04	k: 1114	n:3300000
Cons ci ratio: 1.243161e-01	ci left: 2.824845e-04	ci right 3.202196e-04	k: 993	n:3300000
KS ci ratio: 7.466739e-03	ci left: 7.679517e-02	ci right 7.737102e-02	k: 254373	n:3300000
MAST1   3300000 perm   4988 sec   (662 perm/sec)   p_kst 7.708273e-02   p_cons 3.009091e-04   p_joint 3.375758e-04

Joint ci ratio: 1.172173e-01	ci left: 3.179629e-04	ci right 3.578442e-04	k: 1117	n:3310000
Cons ci ratio: 1.242537e-01	ci left: 2.819238e-04	ci right 3.195637e-04	k: 994	n:3310000
KS ci ratio: 7.455275e-03	ci left: 7.679898e-02	ci right 7.737397e-02	k: 255155	n:3310000
MAST1   3310000 perm   5013 sec   (660 perm/sec)   p_kst 7.708610e-02   p_cons 3.003021e-04   p_joint 3.374622e-04

Joint ci ratio: 1.170082e-01	ci left: 3.181747e-04	ci right 3.580064e-04	k: 1121	n:3320000
Cons ci ratio: 1.240046e-01	ci left: 2.822420e-04	ci right 3.198434e-04	k: 998	n:3320000
KS ci ratio: 7.443311e-03	ci left: 7.681328e-02	ci right 7.738745e-02	k: 255972	n:3320000
MAST1   3320000 perm   5038 sec   (659 perm/sec)   p_kst 7.710000e-02   p_cons 3.006024e-04   p_joint 3.376506e-04

Joint ci ratio: 1.168001e-01	ci left: 3.183853e-04	ci right 3.581676e-04	k: 1125	n:3330000
Cons ci ratio: 1.237571e-01	ci left: 2.825584e-04	ci right 3.201213e-04	k: 1002	n:3330000
KS ci ratio: 7.432707e-03	ci left: 7.680262e-02	ci right 7.737589e-02	k: 256706	n:3330000
MAST1   3330000 perm   5064 sec   (658 perm/sec)   p_kst 7.708889e-02   p_cons 3.009009e-04   p_joint 3.378378e-04

Joint ci ratio: 1.166966e-01	ci left: 3.180134e-04	ci right 3.577116e-04	k: 1127	n:3340000
Cons ci ratio: 1.235724e-01	ci left: 2.825829e-04	ci right 3.200888e-04	k: 1005	n:3340000
KS ci ratio: 7.422211e-03	ci left: 7.679083e-02	ci right 7.736320e-02	k: 257436	n:3340000
MAST1   3340000 perm   5089 sec   (656 perm/sec)   p_kst 7.707665e-02   p_cons 3.008982e-04   p_joint 3.374251e-04

Joint ci ratio: 1.166449e-01	ci left: 3.173539e-04	ci right 3.569510e-04	k: 1128	n:3350000
Cons ci ratio: 1.234498e-01	ci left: 2.823179e-04	ci right 3.197488e-04	k: 1007	n:3350000
KS ci ratio: 7.410717e-03	ci left: 7.679907e-02	ci right 7.737061e-02	k: 258233	n:3350000
MAST1   3350000 perm   5114 sec   (655 perm/sec)   p_kst 7.708448e-02   p_cons 3.005970e-04   p_joint 3.367164e-04

Joint ci ratio: 1.162338e-01	ci left: 3.187210e-04	ci right 3.583389e-04	k: 1136	n:3360000
Cons ci ratio: 1.232665e-01	ci left: 2.823430e-04	ci right 3.197175e-04	k: 1010	n:3360000
KS ci ratio: 7.400328e-03	ci left: 7.678706e-02	ci right 7.735771e-02	k: 258962	n:3360000
MAST1   3360000 perm   5139 sec   (654 perm/sec)   p_kst 7.707202e-02   p_cons 3.005952e-04   p_joint 3.380952e-04

Joint ci ratio: 1.161317e-01	ci left: 3.183515e-04	ci right 3.578863e-04	k: 1138	n:3370000
Cons ci ratio: 1.231448e-01	ci left: 2.820803e-04	ci right 3.193806e-04	k: 1012	n:3370000
KS ci ratio: 7.390014e-03	ci left: 7.677454e-02	ci right 7.734429e-02	k: 259689	n:3370000
MAST1   3370000 perm   5164 sec   (653 perm/sec)   p_kst 7.705905e-02   p_cons 3.002967e-04   p_joint 3.376855e-04

Joint ci ratio: 1.159791e-01	ci left: 3.182714e-04	ci right 3.577408e-04	k: 1141	n:3380000
Cons ci ratio: 1.230234e-01	ci left: 2.818193e-04	ci right 3.190456e-04	k: 1014	n:3380000
KS ci ratio: 7.379559e-03	ci left: 7.676563e-02	ci right 7.733451e-02	k: 260428	n:3380000
MAST1   3380000 perm   5190 sec   (651 perm/sec)   p_kst 7.704970e-02   p_cons 3.000000e-04   p_joint 3.375740e-04

Joint ci ratio: 1.157765e-01	ci left: 3.184783e-04	ci right 3.578996e-04	k: 1145	n:3390000
Cons ci ratio: 1.229024e-01	ci left: 2.815598e-04	ci right 3.187125e-04	k: 1016	n:3390000
KS ci ratio: 7.368659e-03	ci left: 7.676619e-02	ci right 7.733423e-02	k: 261199	n:3390000
MAST1   3390000 perm   5215 sec   (650 perm/sec)   p_kst 7.704985e-02   p_cons 2.997050e-04   p_joint 3.377581e-04

Joint ci ratio: 1.157260e-01	ci left: 3.178272e-04	ci right 3.571496e-04	k: 1146	n:3400000
Cons ci ratio: 1.226614e-01	ci left: 2.818720e-04	ci right 3.189877e-04	k: 1020	n:3400000
KS ci ratio: 7.358036e-03	ci left: 7.676235e-02	ci right 7.732954e-02	k: 261955	n:3400000
MAST1   3400000 perm   5242 sec   (649 perm/sec)   p_kst 7.704559e-02   p_cons 3.000000e-04   p_joint 3.370588e-04

Joint ci ratio: 1.157261e-01	ci left: 3.168951e-04	ci right 3.561023e-04	k: 1146	n:3410000
Cons ci ratio: 1.226014e-01	ci left: 2.813296e-04	ci right 3.183545e-04	k: 1021	n:3410000
KS ci ratio: 7.346928e-03	ci left: 7.676878e-02	ci right 7.733516e-02	k: 262746	n:3410000
MAST1   3410000 perm   5268 sec   (647 perm/sec)   p_kst 7.705161e-02   p_cons 2.994135e-04   p_joint 3.360704e-04

Joint ci ratio: 1.156253e-01	ci left: 3.165364e-04	ci right 3.556627e-04	k: 1148	n:3420000
Cons ci ratio: 1.224816e-01	ci left: 2.810739e-04	ci right 3.180264e-04	k: 1023	n:3420000
KS ci ratio: 7.336398e-03	ci left: 7.676496e-02	ci right 7.733049e-02	k: 263502	n:3420000
MAST1   3420000 perm   5293 sec   (646 perm/sec)   p_kst 7.704737e-02   p_cons 2.991228e-04   p_joint 3.356725e-04

Joint ci ratio: 1.155249e-01	ci left: 3.161798e-04	ci right 3.552258e-04	k: 1150	n:3430000
Cons ci ratio: 1.223622e-01	ci left: 2.808197e-04	ci right 3.177001e-04	k: 1025	n:3430000
KS ci ratio: 7.325703e-03	ci left: 7.676523e-02	ci right 7.732994e-02	k: 264272	n:3430000
MAST1   3430000 perm   5319 sec   (645 perm/sec)   p_kst 7.704723e-02   p_cons 2.988338e-04   p_joint 3.352770e-04

Joint ci ratio: 1.152747e-01	ci left: 3.166722e-04	ci right 3.556886e-04	k: 1155	n:3440000
Cons ci ratio: 1.221837e-01	ci left: 2.808488e-04	ci right 3.176754e-04	k: 1028	n:3440000
KS ci ratio: 7.314665e-03	ci left: 7.677305e-02	ci right 7.733696e-02	k: 265068	n:3440000
MAST1   3440000 perm   5345 sec   (644 perm/sec)   p_kst 7.705465e-02   p_cons 2.988372e-04   p_joint 3.357558e-04

Joint ci ratio: 1.151254e-01	ci left: 3.165988e-04	ci right 3.555522e-04	k: 1158	n:3450000
Cons ci ratio: 1.220652e-01	ci left: 2.805967e-04	ci right 3.173520e-04	k: 1030	n:3450000
KS ci ratio: 7.303351e-03	ci left: 7.678719e-02	ci right 7.735033e-02	k: 265886	n:3450000
MAST1   3450000 perm   5371 sec   (642 perm/sec)   p_kst 7.706841e-02   p_cons 2.985507e-04   p_joint 3.356522e-04

Joint ci ratio: 1.150759e-01	ci left: 3.159645e-04	ci right 3.548219e-04	k: 1159	n:3460000
Cons ci ratio: 1.220061e-01	ci left: 2.800659e-04	ci right 3.167326e-04	k: 1031	n:3460000
KS ci ratio: 7.292355e-03	ci left: 7.679606e-02	ci right 7.735841e-02	k: 266686	n:3460000
MAST1   3460000 perm   5397 sec   (641 perm/sec)   p_kst 7.707688e-02   p_cons 2.979769e-04   p_joint 3.349711e-04

Joint ci ratio: 1.148286e-01	ci left: 3.164534e-04	ci right 3.552817e-04	k: 1164	n:3470000
Cons ci ratio: 1.218291e-01	ci left: 2.800970e-04	ci right 3.167107e-04	k: 1034	n:3470000
KS ci ratio: 7.281984e-03	ci left: 7.679365e-02	ci right 7.735518e-02	k: 267447	n:3470000
MAST1   3470000 perm   5423 sec   (640 perm/sec)   p_kst 7.707406e-02   p_cons 2.979827e-04   p_joint 3.354467e-04

Joint ci ratio: 1.146811e-01	ci left: 3.163814e-04	ci right 3.551476e-04	k: 1167	n:3480000
Cons ci ratio: 1.215943e-01	ci left: 2.804066e-04	ci right 3.169851e-04	k: 1038	n:3480000
KS ci ratio: 7.271466e-03	ci left: 7.679499e-02	ci right 7.735572e-02	k: 268221	n:3480000
MAST1   3480000 perm   5449 sec   (639 perm/sec)   p_kst 7.707500e-02   p_cons 2.982759e-04   p_joint 3.353448e-04

Joint ci ratio: 1.146320e-01	ci left: 3.157532e-04	ci right 3.544247e-04	k: 1168	n:3490000
Cons ci ratio: 1.214192e-01	ci left: 2.804366e-04	ci right 3.169625e-04	k: 1041	n:3490000
KS ci ratio: 7.261242e-03	ci left: 7.679146e-02	ci right 7.735137e-02	k: 268978	n:3490000
MAST1   3490000 perm   5476 sec   (637 perm/sec)   p_kst 7.707106e-02   p_cons 2.982808e-04   p_joint 3.346705e-04

Joint ci ratio: 1.146321e-01	ci left: 3.148510e-04	ci right 3.534121e-04	k: 1168	n:3500000
Cons ci ratio: 1.213610e-01	ci left: 2.799124e-04	ci right 3.163513e-04	k: 1042	n:3500000
KS ci ratio: 7.250915e-03	ci left: 7.679080e-02	ci right 7.734990e-02	k: 269745	n:3500000
MAST1   3500000 perm   5502 sec   (636 perm/sec)   p_kst 7.707000e-02   p_cons 2.977143e-04   p_joint 3.337143e-04

Joint ci ratio: 1.144853e-01	ci left: 3.147842e-04	ci right 3.532844e-04	k: 1171	n:3510000
Cons ci ratio: 1.213029e-01	ci left: 2.793912e-04	ci right 3.157435e-04	k: 1043	n:3510000
KS ci ratio: 7.239864e-03	ci left: 7.680522e-02	ci right 7.736357e-02	k: 270565	n:3510000
MAST1   3510000 perm   5529 sec   (635 perm/sec)   p_kst 7.708405e-02   p_cons 2.971510e-04   p_joint 3.336182e-04

Joint ci ratio: 1.143390e-01	ci left: 3.147178e-04	ci right 3.531574e-04	k: 1174	n:3520000
Cons ci ratio: 1.212449e-01	ci left: 2.788729e-04	ci right 3.151393e-04	k: 1044	n:3520000
KS ci ratio: 7.229643e-03	ci left: 7.680424e-02	ci right 7.736180e-02	k: 271331	n:3520000
MAST1   3520000 perm   5555 sec   (634 perm/sec)   p_kst 7.708267e-02   p_cons 2.965909e-04   p_joint 3.335227e-04

Joint ci ratio: 1.140965e-01	ci left: 3.152023e-04	ci right 3.536138e-04	k: 1179	n:3530000
Cons ci ratio: 1.211290e-01	ci left: 2.786323e-04	ci right 3.148303e-04	k: 1046	n:3530000
KS ci ratio: 7.219033e-03	ci left: 7.681175e-02	ci right 7.736854e-02	k: 272127	n:3530000
MAST1   3530000 perm   5582 sec   (632 perm/sec)   p_kst 7.708980e-02   p_cons 2.963173e-04   p_joint 3.339943e-04

Joint ci ratio: 1.155757e-01	ci left: 3.060806e-04	ci right 3.438971e-04	k: 1149	n:3540000
Cons ci ratio: 1.210135e-01	ci left: 2.783930e-04	ci right 3.145230e-04	k: 1048	n:3540000
KS ci ratio: 7.209158e-03	ci left: 7.680569e-02	ci right 7.736167e-02	k: 272875	n:3540000
MAST1   3540000 perm   5608 sec   (631 perm/sec)   p_kst 7.708333e-02   p_cons 2.960452e-04   p_joint 3.245763e-04

Joint ci ratio: 1.136638e-01	ci left: 3.158895e-04	ci right 3.542290e-04	k: 1188	n:3550000
Cons ci ratio: 1.207834e-01	ci left: 2.787015e-04	ci right 3.147978e-04	k: 1052	n:3550000
KS ci ratio: 7.198852e-03	ci left: 7.680894e-02	ci right 7.736414e-02	k: 273656	n:3550000
MAST1   3550000 perm   5635 sec   (630 perm/sec)   p_kst 7.708620e-02   p_cons 2.963380e-04   p_joint 3.346479e-04

Joint ci ratio: 1.135684e-01	ci left: 3.155480e-04	ci right 3.538118e-04	k: 1190	n:3560000
Cons ci ratio: 1.206118e-01	ci left: 2.787359e-04	ci right 3.147817e-04	k: 1055	n:3560000
KS ci ratio: 7.188874e-03	ci left: 7.680656e-02	ci right 7.736098e-02	k: 274417	n:3560000
MAST1   3560000 perm   5662 sec   (629 perm/sec)   p_kst 7.708343e-02   p_cons 2.963483e-04   p_joint 3.342697e-04

Joint ci ratio: 1.134732e-01	ci left: 3.152084e-04	ci right 3.533968e-04	k: 1192	n:3570000
Cons ci ratio: 1.205547e-01	ci left: 2.782268e-04	ci right 3.141885e-04	k: 1056	n:3570000
KS ci ratio: 7.178471e-03	ci left: 7.681343e-02	ci right 7.736709e-02	k: 275211	n:3570000
MAST1   3570000 perm   5688 sec   (628 perm/sec)   p_kst 7.708992e-02   p_cons 2.957983e-04   p_joint 3.338936e-04

Joint ci ratio: 1.148292e-01	ci left: 3.067299e-04	ci right 3.443653e-04	k: 1164	n:3580000
Cons ci ratio: 1.203272e-01	ci left: 2.785333e-04	ci right 3.144618e-04	k: 1060	n:3580000
KS ci ratio: 7.168240e-03	ci left: 7.681775e-02	ci right 7.737065e-02	k: 275996	n:3580000
MAST1   3580000 perm   5715 sec   (626 perm/sec)   p_kst 7.709385e-02   p_cons 2.960894e-04   p_joint 3.251397e-04

Joint ci ratio: 1.146326e-01	ci left: 3.069578e-04	ci right 3.445523e-04	k: 1168	n:3590000
Cons ci ratio: 1.202140e-01	ci left: 2.782978e-04	ci right 3.141598e-04	k: 1062	n:3590000
KS ci ratio: 7.158052e-03	ci left: 7.682204e-02	ci right 7.737418e-02	k: 276781	n:3590000
MAST1   3590000 perm   5742 sec   (625 perm/sec)   p_kst 7.709777e-02   p_cons 2.958217e-04   p_joint 3.253482e-04

Joint ci ratio: 1.145836e-01	ci left: 3.063749e-04	ci right 3.438809e-04	k: 1169	n:3600000
Cons ci ratio: 1.200447e-01	ci left: 2.783330e-04	ci right 3.141454e-04	k: 1065	n:3600000
KS ci ratio: 7.148020e-03	ci left: 7.682410e-02	ci right 7.737547e-02	k: 277558	n:3600000
MAST1   3600000 perm   5770 sec   (624 perm/sec)   p_kst 7.709944e-02   p_cons 2.958333e-04   p_joint 3.247222e-04

Joint ci ratio: 1.143882e-01	ci left: 3.066025e-04	ci right 3.440681e-04	k: 1173	n:3610000
Cons ci ratio: 1.197642e-01	ci left: 2.789055e-04	ci right 3.147018e-04	k: 1070	n:3610000
KS ci ratio: 7.137988e-03	ci left: 7.682697e-02	ci right 7.737759e-02	k: 278338	n:3610000
MAST1   3610000 perm   5797 sec   (623 perm/sec)   p_kst 7.710194e-02   p_cons 2.963989e-04   p_joint 3.249307e-04

Joint ci ratio: 1.140970e-01	ci left: 3.073657e-04	ci right 3.448224e-04	k: 1179	n:3620000
Cons ci ratio: 1.194855e-01	ci left: 2.794750e-04	ci right 3.152550e-04	k: 1075	n:3620000
KS ci ratio: 7.128274e-03	ci left: 7.682431e-02	ci right 7.737416e-02	k: 279098	n:3620000
MAST1   3620000 perm   5825 sec   (621 perm/sec)   p_kst 7.709890e-02   p_cons 2.969613e-04   p_joint 3.256906e-04

Joint ci ratio: 1.138560e-01	ci left: 3.078571e-04	ci right 3.452891e-04	k: 1184	n:3630000
Cons ci ratio: 1.192088e-01	ci left: 2.800413e-04	ci right 3.158050e-04	k: 1080	n:3630000
KS ci ratio: 7.118187e-03	ci left: 7.682992e-02	ci right 7.737902e-02	k: 279888	n:3630000
MAST1   3630000 perm   5852 sec   (620 perm/sec)   p_kst 7.710413e-02   p_cons 2.975207e-04   p_joint 3.261708e-04

Joint ci ratio: 1.136165e-01	ci left: 3.083459e-04	ci right 3.457532e-04	k: 1189	n:3640000
Cons ci ratio: 1.189341e-01	ci left: 2.806047e-04	ci right 3.163519e-04	k: 1085	n:3640000
KS ci ratio: 7.108499e-03	ci left: 7.682836e-02	ci right 7.737671e-02	k: 280652	n:3640000
MAST1   3640000 perm   5879 sec   (619 perm/sec)   p_kst 7.710220e-02   p_cons 2.980769e-04   p_joint 3.266484e-04

Joint ci ratio: 1.135212e-01	ci left: 3.080335e-04	ci right 3.453695e-04	k: 1191	n:3650000
Cons ci ratio: 1.187156e-01	ci left: 2.808993e-04	ci right 3.166137e-04	k: 1089	n:3650000
KS ci ratio: 7.098291e-03	ci left: 7.683803e-02	ci right 7.738565e-02	k: 281457	n:3650000
MAST1   3650000 perm   5906 sec   (618 perm/sec)   p_kst 7.711151e-02   p_cons 2.983562e-04   p_joint 3.263014e-04

Joint ci ratio: 1.133312e-01	ci left: 3.082537e-04	ci right 3.455497e-04	k: 1195	n:3660000
Cons ci ratio: 1.184442e-01	ci left: 2.814574e-04	ci right 3.171552e-04	k: 1094	n:3660000
KS ci ratio: 7.088983e-03	ci left: 7.683046e-02	ci right 7.737731e-02	k: 282199	n:3660000
MAST1   3660000 perm   5933 sec   (617 perm/sec)   p_kst 7.710355e-02   p_cons 2.989071e-04   p_joint 3.265027e-04

Joint ci ratio: 1.130950e-01	ci left: 3.087376e-04	ci right 3.460091e-04	k: 1200	n:3670000
Cons ci ratio: 1.182823e-01	ci left: 2.814837e-04	ci right 3.171326e-04	k: 1097	n:3670000
KS ci ratio: 7.079183e-03	ci left: 7.683354e-02	ci right 7.737966e-02	k: 282980	n:3670000
MAST1   3670000 perm   5961 sec   (616 perm/sec)   p_kst 7.710627e-02   p_cons 2.989101e-04   p_joint 3.269755e-04

Joint ci ratio: 1.127668e-01	ci left: 3.097471e-04	ci right 3.470247e-04	k: 1207	n:3680000
Cons ci ratio: 1.180139e-01	ci left: 2.820374e-04	ci right 3.176697e-04	k: 1102	n:3680000
KS ci ratio: 7.069262e-03	ci left: 7.683987e-02	ci right 7.738526e-02	k: 283773	n:3680000
MAST1   3680000 perm   5989 sec   (615 perm/sec)   p_kst 7.711223e-02   p_cons 2.994565e-04   p_joint 3.279891e-04

Joint ci ratio: 1.126736e-01	ci left: 3.094344e-04	ci right 3.466416e-04	k: 1209	n:3690000
Cons ci ratio: 1.179071e-01	ci left: 2.817990e-04	ci right 3.173668e-04	k: 1104	n:3690000
KS ci ratio: 7.059208e-03	ci left: 7.684967e-02	ci right 7.739435e-02	k: 284579	n:3690000
MAST1   3690000 perm   6016 sec   (613 perm/sec)   p_kst 7.712168e-02   p_cons 2.991870e-04   p_joint 3.276423e-04

Joint ci ratio: 1.124415e-01	ci left: 3.099114e-04	ci right 3.470941e-04	k: 1214	n:3700000
Cons ci ratio: 1.176942e-01	ci left: 2.820866e-04	ci right 3.176220e-04	k: 1108	n:3700000
KS ci ratio: 7.049732e-03	ci left: 7.684863e-02	ci right 7.739257e-02	k: 285345	n:3700000
MAST1   3700000 perm   6043 sec   (612 perm/sec)   p_kst 7.712027e-02   p_cons 2.994595e-04   p_joint 3.281081e-04

Joint ci ratio: 1.123029e-01	ci left: 3.098620e-04	ci right 3.469899e-04	k: 1217	n:3710000
Cons ci ratio: 1.174298e-01	ci left: 2.826344e-04	ci right 3.181532e-04	k: 1113	n:3710000
KS ci ratio: 7.040227e-03	ci left: 7.684894e-02	ci right 7.739215e-02	k: 286116	n:3710000
MAST1   3710000 perm   6071 sec   (611 perm/sec)   p_kst 7.712022e-02   p_cons 3.000000e-04   p_joint 3.280323e-04

Joint ci ratio: 1.121190e-01	ci left: 3.100741e-04	ci right 3.471625e-04	k: 1221	n:3720000
Cons ci ratio: 1.173245e-01	ci left: 2.823965e-04	ci right 3.178513e-04	k: 1115	n:3720000
KS ci ratio: 7.030681e-03	ci left: 7.685086e-02	ci right 7.739334e-02	k: 286893	n:3720000
MAST1   3720000 perm   6098 sec   (610 perm/sec)   p_kst 7.712177e-02   p_cons 2.997312e-04   p_joint 3.282258e-04

Joint ci ratio: 1.119816e-01	ci left: 3.100246e-04	ci right 3.470586e-04	k: 1224	n:3730000
Cons ci ratio: 1.171671e-01	ci left: 2.824201e-04	ci right 3.178270e-04	k: 1118	n:3730000
KS ci ratio: 7.021531e-03	ci left: 7.684555e-02	ci right 7.738728e-02	k: 287643	n:3730000
MAST1   3730000 perm   6127 sec   (609 perm/sec)   p_kst 7.711609e-02   p_cons 2.997319e-04   p_joint 3.281501e-04

Joint ci ratio: 1.117992e-01	ci left: 3.102352e-04	ci right 3.472301e-04	k: 1228	n:3740000
Cons ci ratio: 1.169583e-01	ci left: 2.827031e-04	ci right 3.180781e-04	k: 1122	n:3740000
KS ci ratio: 7.012311e-03	ci left: 7.684240e-02	ci right 7.738339e-02	k: 288401	n:3740000
MAST1   3740000 perm   6155 sec   (608 perm/sec)   p_kst 7.711257e-02   p_cons 3.000000e-04   p_joint 3.283422e-04

Joint ci ratio: 1.116177e-01	ci left: 3.104448e-04	ci right 3.474006e-04	k: 1232	n:3750000
Cons ci ratio: 1.168543e-01	ci left: 2.824670e-04	ci right 3.177788e-04	k: 1124	n:3750000
KS ci ratio: 7.003114e-03	ci left: 7.683953e-02	ci right 7.737979e-02	k: 289160	n:3750000
MAST1   3750000 perm   6183 sec   (606 perm/sec)   p_kst 7.710933e-02   p_cons 2.997333e-04   p_joint 3.285333e-04

Joint ci ratio: 1.115273e-01	ci left: 3.101362e-04	ci right 3.470234e-04	k: 1234	n:3760000
Cons ci ratio: 1.168543e-01	ci left: 2.817158e-04	ci right 3.169336e-04	k: 1124	n:3760000
KS ci ratio: 6.994477e-03	ci left: 7.682605e-02	ci right 7.736555e-02	k: 289879	n:3760000
MAST1   3760000 perm   6211 sec   (605 perm/sec)   p_kst 7.709548e-02   p_cons 2.989362e-04   p_joint 3.281915e-04

Joint ci ratio: 1.113022e-01	ci left: 3.106029e-04	ci right 3.474661e-04	k: 1239	n:3770000
Cons ci ratio: 1.164924e-01	ci left: 2.827711e-04	ci right 3.180039e-04	k: 1131	n:3770000
KS ci ratio: 6.985350e-03	ci left: 7.682325e-02	ci right 7.736202e-02	k: 290638	n:3770000
MAST1   3770000 perm   6239 sec   (604 perm/sec)   p_kst 7.709231e-02   p_cons 3.000000e-04   p_joint 3.286472e-04

Joint ci ratio: 1.023611e-01	ci left: 3.679753e-04	ci right 4.079288e-04	k: 1465	n:3780000
Cons ci ratio: 1.163383e-01	ci left: 2.827936e-04	ci right 3.179793e-04	k: 1134	n:3780000
KS ci ratio: 6.976336e-03	ci left: 7.681887e-02	ci right 7.735691e-02	k: 291391	n:3780000
MAST1   3780000 perm   6267 sec   (603 perm/sec)   p_kst 7.708757e-02   p_cons 3.000000e-04   p_joint 3.875661e-04

Joint ci ratio: 1.022913e-01	ci left: 3.675186e-04	ci right 4.073937e-04	k: 1467	n:3790000
Cons ci ratio: 1.162360e-01	ci left: 2.825597e-04	ci right 3.176834e-04	k: 1136	n:3790000
KS ci ratio: 6.967319e-03	ci left: 7.681530e-02	ci right 7.735263e-02	k: 292147	n:3790000
MAST1   3790000 perm   6296 sec   (602 perm/sec)   p_kst 7.708364e-02   p_cons 2.997361e-04   p_joint 3.870712e-04

Joint ci ratio: 1.021870e-01	ci left: 3.673208e-04	ci right 4.071312e-04	k: 1470	n:3800000
Cons ci ratio: 1.161339e-01	ci left: 2.823272e-04	ci right 3.173890e-04	k: 1138	n:3800000
KS ci ratio: 6.957989e-03	ci left: 7.681885e-02	ci right 7.735548e-02	k: 292930	n:3800000
MAST1   3800000 perm   6324 sec   (601 perm/sec)   p_kst 7.708684e-02   p_cons 2.994737e-04   p_joint 3.868421e-04

Joint ci ratio: 1.020830e-01	ci left: 3.671239e-04	ci right 4.068701e-04	k: 1473	n:3810000
Cons ci ratio: 1.159813e-01	ci left: 2.823507e-04	ci right 3.173662e-04	k: 1141	n:3810000
KS ci ratio: 6.948657e-03	ci left: 7.682317e-02	ci right 7.735910e-02	k: 293716	n:3810000
MAST1   3810000 perm   6353 sec   (600 perm/sec)   p_kst 7.709081e-02   p_cons 2.994751e-04   p_joint 3.866142e-04

Joint ci ratio: 1.020830e-01	ci left: 3.661629e-04	ci right 4.058050e-04	k: 1473	n:3820000
Cons ci ratio: 1.159813e-01	ci left: 2.816116e-04	ci right 3.165354e-04	k: 1141	n:3820000
KS ci ratio: 6.939721e-03	ci left: 7.682015e-02	ci right 7.735536e-02	k: 294474	n:3820000
MAST1   3820000 perm   6381 sec   (599 perm/sec)   p_kst 7.708743e-02   p_cons 2.986911e-04   p_joint 3.856021e-04

Joint ci ratio: 1.019793e-01	ci left: 3.659701e-04	ci right 4.055488e-04	k: 1476	n:3830000
Cons ci ratio: 1.158799e-01	ci left: 2.813833e-04	ci right 3.162463e-04	k: 1143	n:3830000
KS ci ratio: 6.930336e-03	ci left: 7.682704e-02	ci right 7.736158e-02	k: 295270	n:3830000
MAST1   3830000 perm   6410 sec   (597 perm/sec)   p_kst 7.709399e-02   p_cons 2.984334e-04   p_joint 3.853786e-04

Joint ci ratio: 1.018415e-01	ci left: 3.660322e-04	ci right 4.055609e-04	k: 1480	n:3840000
Cons ci ratio: 1.156275e-01	ci left: 2.819150e-04	ci right 3.167625e-04	k: 1148	n:3840000
KS ci ratio: 6.921230e-03	ci left: 7.682897e-02	ci right 7.736282e-02	k: 296047	n:3840000
MAST1   3840000 perm   6439 sec   (596 perm/sec)   p_kst 7.709557e-02   p_cons 2.989583e-04   p_joint 3.854167e-04

Joint ci ratio: 1.017385e-01	ci left: 3.658409e-04	ci right 4.053065e-04	k: 1483	n:3850000
Cons ci ratio: 1.153767e-01	ci left: 2.824439e-04	ci right 3.172759e-04	k: 1153	n:3850000
KS ci ratio: 6.912373e-03	ci left: 7.682647e-02	ci right 7.735962e-02	k: 296807	n:3850000
MAST1   3850000 perm   6468 sec   (595 perm/sec)   p_kst 7.709273e-02   p_cons 2.994805e-04   p_joint 3.851948e-04

Joint ci ratio: 1.004270e-01	ci left: 3.747414e-04	ci right 4.146154e-04	k: 1522	n:3860000
Cons ci ratio: 1.151772e-01	ci left: 2.827186e-04	ci right 3.175201e-04	k: 1157	n:3860000
KS ci ratio: 6.903250e-03	ci left: 7.683020e-02	ci right 7.736266e-02	k: 297591	n:3860000
MAST1   3860000 perm   6496 sec   (594 perm/sec)   p_kst 7.709611e-02   p_cons 2.997409e-04   p_joint 3.943005e-04

Joint ci ratio: 1.002953e-01	ci left: 3.747807e-04	ci right 4.146035e-04	k: 1526	n:3870000
Cons ci ratio: 1.150283e-01	ci left: 2.827409e-04	ci right 3.174971e-04	k: 1160	n:3870000
KS ci ratio: 6.893548e-03	ci left: 7.684655e-02	ci right 7.737837e-02	k: 298424	n:3870000
MAST1   3870000 perm   6525 sec   (593 perm/sec)   p_kst 7.711214e-02   p_cons 2.997416e-04   p_joint 3.943152e-04

Joint ci ratio: 9.996847e-02	ci left: 3.763276e-04	ci right 4.161768e-04	k: 1536	n:3880000
Cons ci ratio: 1.147322e-01	ci left: 2.835142e-04	ci right 3.182696e-04	k: 1166	n:3880000
KS ci ratio: 6.884337e-03	ci left: 7.685355e-02	ci right 7.738471e-02	k: 299221	n:3880000
MAST1   3880000 perm   6554 sec   (592 perm/sec)   p_kst 7.711881e-02   p_cons 3.005155e-04   p_joint 3.958763e-04

Joint ci ratio: 9.990352e-02	ci left: 3.758614e-04	ci right 4.156339e-04	k: 1538	n:3890000
Cons ci ratio: 1.146340e-01	ci left: 2.832847e-04	ci right 3.179803e-04	k: 1168	n:3890000
KS ci ratio: 6.875149e-03	ci left: 7.686077e-02	ci right 7.739127e-02	k: 300019	n:3890000
MAST1   3890000 perm   6583 sec   (591 perm/sec)   p_kst 7.712571e-02   p_cons 3.002571e-04   p_joint 3.953728e-04

Joint ci ratio: 9.974161e-02	ci left: 3.761477e-04	ci right 4.158822e-04	k: 1543	n:3900000
Cons ci ratio: 1.144384e-01	ci left: 2.835546e-04	ci right 3.182200e-04	k: 1172	n:3900000
KS ci ratio: 6.866320e-03	ci left: 7.686130e-02	ci right 7.739112e-02	k: 300791	n:3900000
MAST1   3900000 perm   6612 sec   (590 perm/sec)   p_kst 7.712590e-02   p_cons 3.005128e-04   p_joint 3.956410e-04

Joint ci ratio: 9.958049e-02	ci left: 3.764326e-04	ci right 4.161292e-04	k: 1548	n:3910000
Cons ci ratio: 1.142923e-01	ci left: 2.835747e-04	ci right 3.181954e-04	k: 1175	n:3910000
KS ci ratio: 6.857821e-03	ci left: 7.685570e-02	ci right 7.738482e-02	k: 301539	n:3910000
MAST1   3910000 perm   6641 sec   (589 perm/sec)   p_kst 7.711995e-02   p_cons 3.005115e-04   p_joint 3.959079e-04

Joint ci ratio: 9.948421e-02	ci left: 3.762186e-04	ci right 4.158520e-04	k: 1551	n:3920000
Cons ci ratio: 1.142438e-01	ci left: 2.830991e-04	ci right 3.176460e-04	k: 1176	n:3920000
KS ci ratio: 6.849414e-03	ci left: 7.684886e-02	ci right 7.737728e-02	k: 302282	n:3920000
MAST1   3920000 perm   6670 sec   (588 perm/sec)   p_kst 7.711276e-02   p_cons 3.000000e-04   p_joint 3.956633e-04

Joint ci ratio: 9.938821e-02	ci left: 3.760057e-04	ci right 4.155762e-04	k: 1554	n:3930000
Cons ci ratio: 1.140985e-01	ci left: 2.831203e-04	ci right 3.176229e-04	k: 1179	n:3930000
KS ci ratio: 6.841173e-03	ci left: 7.683925e-02	ci right 7.736697e-02	k: 303014	n:3930000
MAST1   3930000 perm   6700 sec   (587 perm/sec)   p_kst 7.710280e-02   p_cons 3.000000e-04   p_joint 3.954198e-04

Joint ci ratio: 9.926063e-02	ci left: 3.760413e-04	ci right 4.155619e-04	k: 1558	n:3940000
Cons ci ratio: 1.139056e-01	ci left: 2.833880e-04	ci right 3.178609e-04	k: 1183	n:3940000
KS ci ratio: 6.832364e-03	ci left: 7.684211e-02	ci right 7.736917e-02	k: 303795	n:3940000
MAST1   3940000 perm   6728 sec   (586 perm/sec)   p_kst 7.710533e-02   p_cons 3.002538e-04   p_joint 3.954315e-04

Joint ci ratio: 1.003615e-01	ci left: 3.666965e-04	ci right 4.056876e-04	k: 1524	n:3950000
Cons ci ratio: 1.136658e-01	ci left: 2.839004e-04	ci right 3.183580e-04	k: 1188	n:3950000
KS ci ratio: 6.823820e-03	ci left: 7.684016e-02	ci right 7.736654e-02	k: 304557	n:3950000
MAST1   3950000 perm   6758 sec   (584 perm/sec)   p_kst 7.710304e-02   p_cons 3.007595e-04   p_joint 3.858228e-04

Joint ci ratio: 1.003287e-01	ci left: 3.660167e-04	ci right 4.049220e-04	k: 1525	n:3960000
Cons ci ratio: 1.136180e-01	ci left: 2.834288e-04	ci right 3.178138e-04	k: 1189	n:3960000
KS ci ratio: 6.815550e-03	ci left: 7.683317e-02	ci right 7.735886e-02	k: 305299	n:3960000
MAST1   3960000 perm   6788 sec   (583 perm/sec)   p_kst 7.709571e-02   p_cons 3.002525e-04   p_joint 3.851010e-04

Joint ci ratio: 1.002630e-01	ci left: 3.655859e-04	ci right 4.044184e-04	k: 1527	n:3970000
Cons ci ratio: 1.135227e-01	ci left: 2.832044e-04	ci right 3.175314e-04	k: 1191	n:3970000
KS ci ratio: 6.807370e-03	ci left: 7.682496e-02	ci right 7.734996e-02	k: 306036	n:3970000
MAST1   3970000 perm   6817 sec   (582 perm/sec)   p_kst 7.708715e-02   p_cons 3.000000e-04   p_joint 3.846348e-04

Joint ci ratio: 1.002303e-01	ci left: 3.649123e-04	ci right 4.036599e-04	k: 1528	n:3980000
Cons ci ratio: 1.134276e-01	ci left: 2.829810e-04	ci right 3.172503e-04	k: 1193	n:3980000
KS ci ratio: 6.798295e-03	ci left: 7.683611e-02	ci right 7.736049e-02	k: 306850	n:3980000
MAST1   3980000 perm   6846 sec   (581 perm/sec)   p_kst 7.709799e-02   p_cons 2.997487e-04   p_joint 3.839196e-04

Joint ci ratio: 1.000994e-01	ci left: 3.649751e-04	ci right 4.036758e-04	k: 1532	n:3990000
Cons ci ratio: 1.130965e-01	ci left: 2.839765e-04	ci right 3.182593e-04	k: 1200	n:3990000
KS ci ratio: 6.789220e-03	ci left: 7.684795e-02	ci right 7.737171e-02	k: 307667	n:3990000
MAST1   3990000 perm   6875 sec   (580 perm/sec)   p_kst 7.710952e-02   p_cons 3.007519e-04   p_joint 3.839599e-04

Joint ci ratio: 9.996906e-02	ci left: 3.650376e-04	ci right 4.036916e-04	k: 1536	n:4000000
Cons ci ratio: 1.129086e-01	ci left: 2.842383e-04	ci right 3.184919e-04	k: 1204	n:4000000
KS ci ratio: 6.780813e-03	ci left: 7.684651e-02	ci right 7.736960e-02	k: 308431	n:4000000
MAST1   4000000 perm   6905 sec   (579 perm/sec)   p_kst 7.710775e-02   p_cons 3.010000e-04   p_joint 3.840000e-04

Joint ci ratio: 9.974215e-02	ci left: 3.658294e-04	ci right 4.044741e-04	k: 1543	n:4010000
Cons ci ratio: 1.126751e-01	ci left: 2.847412e-04	ci right 3.189797e-04	k: 1209	n:4010000
KS ci ratio: 6.772330e-03	ci left: 7.684731e-02	ci right 7.736976e-02	k: 309204	n:4010000
MAST1   4010000 perm   6935 sec   (578 perm/sec)   p_kst 7.710823e-02   p_cons 3.014963e-04   p_joint 3.847880e-04

Joint ci ratio: 9.958103e-02	ci left: 3.661321e-04	ci right 4.047427e-04	k: 1548	n:4020000
Cons ci ratio: 1.125356e-01	ci left: 2.847581e-04	ci right 3.189535e-04	k: 1212	n:4020000
KS ci ratio: 6.763512e-03	ci left: 7.685581e-02	ci right 7.737763e-02	k: 310008	n:4020000
MAST1   4020000 perm   6965 sec   (577 perm/sec)   p_kst 7.711642e-02   p_cons 3.014925e-04   p_joint 3.850746e-04

Joint ci ratio: 9.951683e-02	ci left: 3.657075e-04	ci right 4.042470e-04	k: 1550	n:4030000
Cons ci ratio: 1.124893e-01	ci left: 2.842927e-04	ci right 3.184171e-04	k: 1213	n:4030000
KS ci ratio: 6.754752e-03	ci left: 7.686378e-02	ci right 7.738497e-02	k: 310810	n:4030000
MAST1   4030000 perm   6995 sec   (576 perm/sec)   p_kst 7.712407e-02   p_cons 3.009926e-04   p_joint 3.846154e-04

Joint ci ratio: 9.945275e-02	ci left: 3.652850e-04	ci right 4.037538e-04	k: 1552	n:4040000
Cons ci ratio: 1.124430e-01	ci left: 2.838296e-04	ci right 3.178835e-04	k: 1214	n:4040000
KS ci ratio: 6.746484e-03	ci left: 7.686206e-02	ci right 7.738260e-02	k: 311573	n:4040000
MAST1   4040000 perm   7025 sec   (575 perm/sec)   p_kst 7.712203e-02   p_cons 3.004950e-04   p_joint 3.841584e-04

Joint ci ratio: 9.938880e-02	ci left: 3.648647e-04	ci right 4.032630e-04	k: 1554	n:4050000
Cons ci ratio: 1.123045e-01	ci left: 2.838487e-04	ci right 3.178601e-04	k: 1217	n:4050000
KS ci ratio: 6.737814e-03	ci left: 7.686948e-02	ci right 7.738940e-02	k: 312373	n:4050000
MAST1   4050000 perm   7055 sec   (574 perm/sec)   p_kst 7.712914e-02   p_cons 3.004938e-04   p_joint 3.837037e-04

Joint ci ratio: 9.935689e-02	ci left: 3.642062e-04	ci right 4.025221e-04	k: 1555	n:4060000
Cons ci ratio: 1.123045e-01	ci left: 2.831495e-04	ci right 3.170772e-04	k: 1217	n:4060000
KS ci ratio: 6.729887e-03	ci left: 7.686186e-02	ci right 7.738111e-02	k: 313112	n:4060000
MAST1   4060000 perm   7086 sec   (573 perm/sec)   p_kst 7.712118e-02   p_cons 2.997537e-04   p_joint 3.830049e-04

Joint ci ratio: 9.916585e-02	ci left: 3.647489e-04	ci right 4.030439e-04	k: 1561	n:4070000
Cons ci ratio: 1.121205e-01	ci left: 2.834090e-04	ci right 3.173085e-04	k: 1221	n:4070000
KS ci ratio: 6.721199e-03	ci left: 7.687095e-02	ci right 7.738960e-02	k: 313919	n:4070000
MAST1   4070000 perm   7116 sec   (572 perm/sec)   p_kst 7.712998e-02   p_cons 3.000000e-04   p_joint 3.835381e-04

Joint ci ratio: 9.910245e-02	ci left: 3.643330e-04	ci right 4.025584e-04	k: 1563	n:4080000
Cons ci ratio: 1.120289e-01	ci left: 2.831909e-04	ci right 3.170347e-04	k: 1223	n:4080000
KS ci ratio: 6.713677e-03	ci left: 7.685603e-02	ci right 7.737399e-02	k: 314628	n:4080000
MAST1   4080000 perm   7146 sec   (571 perm/sec)   p_kst 7.711471e-02   p_cons 2.997549e-04   p_joint 3.830882e-04

Joint ci ratio: 9.900755e-02	ci left: 3.641575e-04	ci right 4.023258e-04	k: 1566	n:4090000
Cons ci ratio: 1.118919e-01	ci left: 2.832114e-04	ci right 3.170136e-04	k: 1226	n:4090000
KS ci ratio: 6.705248e-03	ci left: 7.686094e-02	ci right 7.737828e-02	k: 315418	n:4090000
MAST1   4090000 perm   7176 sec   (570 perm/sec)   p_kst 7.711932e-02   p_cons 2.997555e-04   p_joint 3.828851e-04

Joint ci ratio: 9.881852e-02	ci left: 3.646965e-04	ci right 4.028441e-04	k: 1572	n:4100000
Cons ci ratio: 1.117553e-01	ci left: 2.832319e-04	ci right 3.169926e-04	k: 1229	n:4100000
KS ci ratio: 6.696930e-03	ci left: 7.686414e-02	ci right 7.738085e-02	k: 316201	n:4100000
MAST1   4100000 perm   7207 sec   (569 perm/sec)   p_kst 7.712220e-02   p_cons 2.997561e-04   p_joint 3.834146e-04

Joint ci ratio: 9.859933e-02	ci left: 3.654703e-04	ci right 4.036092e-04	k: 1579	n:4110000
Cons ci ratio: 1.116193e-01	ci left: 2.832523e-04	ci right 3.169716e-04	k: 1232	n:4110000
KS ci ratio: 6.688918e-03	ci left: 7.686148e-02	ci right 7.737756e-02	k: 316960	n:4110000
MAST1   4110000 perm   7238 sec   (568 perm/sec)   p_kst 7.711922e-02   p_cons 2.997567e-04   p_joint 3.841849e-04

Joint ci ratio: 9.850587e-02	ci left: 3.652934e-04	ci right 4.033756e-04	k: 1582	n:4120000
Cons ci ratio: 1.114387e-01	ci left: 2.835086e-04	ci right 3.172002e-04	k: 1236	n:4120000
KS ci ratio: 6.680718e-03	ci left: 7.686344e-02	ci right 7.737890e-02	k: 317738	n:4120000
MAST1   4120000 perm   7268 sec   (567 perm/sec)   p_kst 7.712087e-02   p_cons 3.000000e-04   p_joint 3.839806e-04

Joint ci ratio: 9.835065e-02	ci left: 3.655898e-04	ci right 4.036394e-04	k: 1587	n:4130000
Cons ci ratio: 1.112141e-01	ci left: 2.839991e-04	ci right 3.176765e-04	k: 1241	n:4130000
KS ci ratio: 6.673024e-03	ci left: 7.685524e-02	ci right 7.737005e-02	k: 318474	n:4130000
MAST1   4130000 perm   7298 sec   (566 perm/sec)   p_kst 7.711235e-02   p_cons 3.004843e-04   p_joint 3.842615e-04

Joint ci ratio: 9.831974e-02	ci left: 3.649423e-04	ci right 4.029119e-04	k: 1588	n:4140000
Cons ci ratio: 1.112142e-01	ci left: 2.833131e-04	ci right 3.169092e-04	k: 1241	n:4140000
KS ci ratio: 6.665267e-03	ci left: 7.684901e-02	ci right 7.736317e-02	k: 319218	n:4140000
MAST1   4140000 perm   7329 sec   (565 perm/sec)   p_kst 7.710580e-02   p_cons 2.997585e-04   p_joint 3.835749e-04

Joint ci ratio: 9.810385e-02	ci left: 3.657083e-04	ci right 4.036692e-04	k: 1595	n:4150000
Cons ci ratio: 1.109465e-01	ci left: 2.840360e-04	ci right 3.176315e-04	k: 1247	n:4150000
KS ci ratio: 6.657492e-03	ci left: 7.684377e-02	ci right 7.735730e-02	k: 319966	n:4150000
MAST1   4150000 perm   7360 sec   (564 perm/sec)   p_kst 7.710024e-02   p_cons 3.004819e-04   p_joint 3.843373e-04

Joint ci ratio: 9.810389e-02	ci left: 3.648292e-04	ci right 4.026988e-04	k: 1595	n:4160000
Cons ci ratio: 1.109021e-01	ci left: 2.835870e-04	ci right 3.171150e-04	k: 1248	n:4160000
KS ci ratio: 6.648722e-03	ci left: 7.686040e-02	ci right 7.737336e-02	k: 320805	n:4160000
MAST1   4160000 perm   7391 sec   (563 perm/sec)   p_kst 7.711659e-02   p_cons 3.000000e-04   p_joint 3.834135e-04

Joint ci ratio: 9.798119e-02	ci left: 3.648900e-04	ci right 4.027159e-04	k: 1599	n:4170000
Cons ci ratio: 1.108577e-01	ci left: 2.831401e-04	ci right 3.166010e-04	k: 1249	n:4170000
KS ci ratio: 6.640590e-03	ci left: 7.686402e-02	ci right 7.737637e-02	k: 321590	n:4170000
MAST1   4170000 perm   7422 sec   (562 perm/sec)   p_kst 7.711990e-02   p_cons 2.995204e-04   p_joint 3.834532e-04

Joint ci ratio: 9.788947e-02	ci left: 3.647172e-04	ci right 4.024877e-04	k: 1602	n:4180000
Cons ci ratio: 1.107249e-01	ci left: 2.831605e-04	ci right 3.165812e-04	k: 1252	n:4180000
KS ci ratio: 6.632455e-03	ci left: 7.686834e-02	ci right 7.738009e-02	k: 322378	n:4180000
MAST1   4180000 perm   7453 sec   (561 perm/sec)   p_kst 7.712392e-02   p_cons 2.995215e-04   p_joint 3.832536e-04

Joint ci ratio: 9.773714e-02	ci left: 3.650109e-04	ci right 4.027496e-04	k: 1607	n:4190000
Cons ci ratio: 1.105926e-01	ci left: 2.831809e-04	ci right 3.165614e-04	k: 1255	n:4190000
KS ci ratio: 6.624338e-03	ci left: 7.687288e-02	ci right 7.738403e-02	k: 323167	n:4190000
MAST1   4190000 perm   7484 sec   (560 perm/sec)   p_kst 7.712816e-02   p_cons 2.995227e-04   p_joint 3.835322e-04

Joint ci ratio: 9.764611e-02	ci left: 3.648386e-04	ci right 4.025224e-04	k: 1610	n:4200000
Cons ci ratio: 1.104608e-01	ci left: 2.832012e-04	ci right 3.165417e-04	k: 1258	n:4200000
KS ci ratio: 6.616473e-03	ci left: 7.687264e-02	ci right 7.738318e-02	k: 323936	n:4200000
MAST1   4200000 perm   7514 sec   (559 perm/sec)   p_kst 7.712762e-02   p_cons 2.995238e-04   p_joint 3.833333e-04

Joint ci ratio: 9.749492e-02	ci left: 3.651307e-04	ci right 4.027829e-04	k: 1615	n:4210000
Cons ci ratio: 1.103731e-01	ci left: 2.829904e-04	ci right 3.162780e-04	k: 1260	n:4210000
KS ci ratio: 6.608789e-03	ci left: 7.686908e-02	ci right 7.737901e-02	k: 324691	n:4210000
MAST1   4210000 perm   7546 sec   (558 perm/sec)   p_kst 7.712375e-02   p_cons 2.992874e-04   p_joint 3.836105e-04

Joint ci ratio: 9.734442e-02	ci left: 3.654214e-04	ci right 4.030422e-04	k: 1620	n:4220000
Cons ci ratio: 1.103294e-01	ci left: 2.825503e-04	ci right 3.157720e-04	k: 1261	n:4220000
KS ci ratio: 6.600891e-03	ci left: 7.687075e-02	ci right 7.738007e-02	k: 325468	n:4220000
MAST1   4220000 perm   7577 sec   (557 perm/sec)   p_kst 7.712512e-02   p_cons 2.988152e-04   p_joint 3.838863e-04

Joint ci ratio: 9.728445e-02	ci left: 3.650188e-04	ci right 4.025737e-04	k: 1622	n:4230000
Cons ci ratio: 1.102858e-01	ci left: 2.821122e-04	ci right 3.152685e-04	k: 1262	n:4230000
KS ci ratio: 6.592999e-03	ci left: 7.687288e-02	ci right 7.738160e-02	k: 326247	n:4230000
MAST1   4230000 perm   7609 sec   (556 perm/sec)   p_kst 7.712695e-02   p_cons 2.983452e-04   p_joint 3.834515e-04

Joint ci ratio: 9.707529e-02	ci left: 3.657688e-04	ci right 4.033152e-04	k: 1629	n:4240000
Cons ci ratio: 1.101115e-01	ci left: 2.823642e-04	ci right 3.154943e-04	k: 1266	n:4240000
KS ci ratio: 6.584765e-03	ci left: 7.688300e-02	ci right 7.739116e-02	k: 327060	n:4240000
MAST1   4240000 perm   7640 sec   (555 perm/sec)   p_kst 7.713679e-02   p_cons 2.985849e-04   p_joint 3.841981e-04

Joint ci ratio: 9.689710e-02	ci left: 3.662857e-04	ci right 4.038123e-04	k: 1635	n:4250000
Cons ci ratio: 1.099381e-01	ci left: 2.826151e-04	ci right 3.157190e-04	k: 1270	n:4250000
KS ci ratio: 6.577169e-03	ci left: 7.687993e-02	ci right 7.738747e-02	k: 327817	n:4250000
MAST1   4250000 perm   7672 sec   (554 perm/sec)   p_kst 7.713341e-02   p_cons 2.988235e-04   p_joint 3.847059e-04

Joint ci ratio: 9.663161e-02	ci left: 3.674874e-04	ci right 4.050281e-04	k: 1644	n:4260000
Cons ci ratio: 1.096795e-01	ci left: 2.833215e-04	ci right 3.164250e-04	k: 1276	n:4260000
KS ci ratio: 6.569622e-03	ci left: 7.687640e-02	ci right 7.738333e-02	k: 328572	n:4260000
MAST1   4260000 perm   7704 sec   (553 perm/sec)   p_kst 7.712958e-02   p_cons 2.995305e-04   p_joint 3.859155e-04

Joint ci ratio: 9.654362e-02	ci left: 3.673124e-04	ci right 4.047991e-04	k: 1647	n:4270000
Cons ci ratio: 1.096366e-01	ci left: 2.828857e-04	ci right 3.159246e-04	k: 1277	n:4270000
KS ci ratio: 6.561604e-03	ci left: 7.688364e-02	ci right 7.739000e-02	k: 329373	n:4270000
MAST1   4270000 perm   7736 sec   (552 perm/sec)   p_kst 7.713653e-02   p_cons 2.990632e-04   p_joint 3.857143e-04

Joint ci ratio: 9.648511e-02	ci left: 3.669102e-04	ci right 4.043319e-04	k: 1649	n:4280000
Cons ci ratio: 1.095509e-01	ci left: 2.826792e-04	ci right 3.156665e-04	k: 1279	n:4280000
KS ci ratio: 6.553659e-03	ci left: 7.688991e-02	ci right 7.739571e-02	k: 330170	n:4280000
MAST1   4280000 perm   7767 sec   (551 perm/sec)   p_kst 7.714252e-02   p_cons 2.988318e-04   p_joint 3.852804e-04

Joint ci ratio: 9.633924e-02	ci left: 3.671923e-04	ci right 4.045830e-04	k: 1654	n:4290000
Cons ci ratio: 1.093801e-01	ci left: 2.829272e-04	ci right 3.158886e-04	k: 1283	n:4290000
KS ci ratio: 6.546599e-03	ci left: 7.687754e-02	ci right 7.738270e-02	k: 330887	n:4290000
MAST1   4290000 perm   7799 sec   (550 perm/sec)   p_kst 7.712984e-02   p_cons 2.990676e-04   p_joint 3.855478e-04

Joint ci ratio: 9.628111e-02	ci left: 3.667923e-04	ci right 4.041184e-04	k: 1656	n:4300000
Cons ci ratio: 1.093376e-01	ci left: 2.824954e-04	ci right 3.153929e-04	k: 1284	n:4300000
KS ci ratio: 6.538815e-03	ci left: 7.688148e-02	ci right 7.738607e-02	k: 331674	n:4300000
MAST1   4300000 perm   7831 sec   (549 perm/sec)   p_kst 7.713349e-02   p_cons 2.986047e-04   p_joint 3.851163e-04

Joint ci ratio: 9.613616e-02	ci left: 3.670735e-04	ci right 4.043688e-04	k: 1661	n:4310000
Cons ci ratio: 1.091678e-01	ci left: 2.827427e-04	ci right 3.156146e-04	k: 1288	n:4310000
KS ci ratio: 6.531026e-03	ci left: 7.688610e-02	ci right 7.739011e-02	k: 332464	n:4310000
MAST1   4310000 perm   7863 sec   (548 perm/sec)   p_kst 7.713782e-02   p_cons 2.988399e-04   p_joint 3.853828e-04

Joint ci ratio: 9.604952e-02	ci left: 3.669015e-04	ci right 4.041439e-04	k: 1664	n:4320000
Cons ci ratio: 1.091678e-01	ci left: 2.820882e-04	ci right 3.148840e-04	k: 1288	n:4320000
KS ci ratio: 6.523658e-03	ci left: 7.688214e-02	ci right 7.738556e-02	k: 333217	n:4320000
MAST1   4320000 perm   7896 sec   (547 perm/sec)   p_kst 7.713356e-02   p_cons 2.981481e-04   p_joint 3.851852e-04

Joint ci ratio: 9.602072e-02	ci left: 3.662795e-04	ci right 4.034470e-04	k: 1665	n:4330000
Cons ci ratio: 1.091256e-01	ci left: 2.816613e-04	ci right 3.143940e-04	k: 1289	n:4330000
KS ci ratio: 6.516092e-03	ci left: 7.688304e-02	ci right 7.738588e-02	k: 333991	n:4330000
MAST1   4330000 perm   7928 sec   (546 perm/sec)   p_kst 7.713418e-02   p_cons 2.976905e-04   p_joint 3.845266e-04

Joint ci ratio: 9.593439e-02	ci left: 3.661102e-04	ci right 4.032252e-04	k: 1668	n:4340000
Cons ci ratio: 1.089567e-01	ci left: 2.819089e-04	ci right 3.146164e-04	k: 1293	n:4340000
KS ci ratio: 6.508290e-03	ci left: 7.688970e-02	ci right 7.739197e-02	k: 334790	n:4340000
MAST1   4340000 perm   7961 sec   (545 perm/sec)   p_kst 7.714055e-02   p_cons 2.979263e-04   p_joint 3.843318e-04

Joint ci ratio: 9.587698e-02	ci left: 3.657173e-04	ci right 4.027691e-04	k: 1670	n:4350000
Cons ci ratio: 1.088727e-01	ci left: 2.817081e-04	ci right 3.143654e-04	k: 1295	n:4350000
KS ci ratio: 6.500399e-03	ci left: 7.689884e-02	ci right 7.740057e-02	k: 335600	n:4350000
MAST1   4350000 perm   7993 sec   (544 perm/sec)   p_kst 7.714943e-02   p_cons 2.977011e-04   p_joint 3.839080e-04

Joint ci ratio: 9.573385e-02	ci left: 3.659979e-04	ci right 4.030196e-04	k: 1675	n:4360000
Cons ci ratio: 1.087050e-01	ci left: 2.819544e-04	ci right 3.145868e-04	k: 1299	n:4360000
KS ci ratio: 6.492831e-03	ci left: 7.690154e-02	ci right 7.740269e-02	k: 336382	n:4360000
MAST1   4360000 perm   8025 sec   (543 perm/sec)   p_kst 7.715183e-02   p_cons 2.979358e-04   p_joint 3.841743e-04

Joint ci ratio: 9.559135e-02	ci left: 3.662771e-04	ci right 4.032688e-04	k: 1680	n:4370000
Cons ci ratio: 1.086215e-01	ci left: 2.817544e-04	ci right 3.143370e-04	k: 1301	n:4370000
KS ci ratio: 6.485049e-03	ci left: 7.690947e-02	ci right 7.741008e-02	k: 337187	n:4370000
MAST1   4370000 perm   8058 sec   (542 perm/sec)   p_kst 7.715950e-02   p_cons 2.977117e-04   p_joint 3.844394e-04

Joint ci ratio: 9.547782e-02	ci left: 3.663323e-04	ci right 4.032832e-04	k: 1684	n:4380000
Cons ci ratio: 1.084966e-01	ci left: 2.817775e-04	ci right 3.143229e-04	k: 1304	n:4380000
KS ci ratio: 6.478375e-03	ci left: 7.689367e-02	ci right 7.739365e-02	k: 337888	n:4380000
MAST1   4380000 perm   8091 sec   (541 perm/sec)   p_kst 7.714338e-02   p_cons 2.977169e-04   p_joint 3.844749e-04

Joint ci ratio: 9.528008e-02	ci left: 3.670543e-04	ci right 4.039971e-04	k: 1691	n:4390000
Cons ci ratio: 1.083307e-01	ci left: 2.820221e-04	ci right 3.145427e-04	k: 1308	n:4390000
KS ci ratio: 6.471473e-03	ci left: 7.688339e-02	ci right 7.738277e-02	k: 338613	n:4390000
MAST1   4390000 perm   8123 sec   (540 perm/sec)   p_kst 7.713280e-02   p_cons 2.979499e-04   p_joint 3.851936e-04

Joint ci ratio: 9.513960e-02	ci left: 3.673294e-04	ci right 4.042423e-04	k: 1696	n:4400000
Cons ci ratio: 1.082067e-01	ci left: 2.820445e-04	ci right 3.145281e-04	k: 1311	n:4400000
KS ci ratio: 6.463819e-03	ci left: 7.689018e-02	ci right 7.738901e-02	k: 339413	n:4400000
MAST1   4400000 perm   8156 sec   (539 perm/sec)   p_kst 7.713932e-02   p_cons 2.979545e-04   p_joint 3.854545e-04

Joint ci ratio: 9.511161e-02	ci left: 3.667178e-04	ci right 4.035578e-04	k: 1697	n:4410000
Cons ci ratio: 1.082068e-01	ci left: 2.814049e-04	ci right 3.138149e-04	k: 1311	n:4410000
KS ci ratio: 6.456624e-03	ci left: 7.688743e-02	ci right 7.738569e-02	k: 340171	n:4410000
MAST1   4410000 perm   8189 sec   (539 perm/sec)   p_kst 7.713628e-02   p_cons 2.972789e-04   p_joint 3.848073e-04

Joint ci ratio: 9.491614e-02	ci left: 3.674342e-04	ci right 4.042661e-04	k: 1704	n:4420000
Cons ci ratio: 1.079602e-01	ci left: 2.820890e-04	ci right 3.144991e-04	k: 1317	n:4420000
KS ci ratio: 6.449422e-03	ci left: 7.688537e-02	ci right 7.738306e-02	k: 340932	n:4420000
MAST1   4420000 perm   8221 sec   (538 perm/sec)   p_kst 7.713394e-02   p_cons 2.979638e-04   p_joint 3.855204e-04

Joint ci ratio: 9.480499e-02	ci left: 3.674863e-04	ci right 4.042779e-04	k: 1708	n:4430000
Cons ci ratio: 1.078784e-01	ci left: 2.818915e-04	ci right 3.142528e-04	k: 1319	n:4430000
KS ci ratio: 6.442050e-03	ci left: 7.688760e-02	ci right 7.738473e-02	k: 341712	n:4430000
MAST1   4430000 perm   8255 sec   (537 perm/sec)   p_kst 7.713589e-02   p_cons 2.977427e-04   p_joint 3.855530e-04

Joint ci ratio: 9.472190e-02	ci left: 3.673183e-04	ci right 4.040591e-04	k: 1711	n:4440000
Cons ci ratio: 1.077153e-01	ci left: 2.821333e-04	ci right 3.144702e-04	k: 1323	n:4440000
KS ci ratio: 6.434581e-03	ci left: 7.689252e-02	ci right 7.738911e-02	k: 342504	n:4440000
MAST1   4440000 perm   8288 sec   (536 perm/sec)   p_kst 7.714054e-02   p_cons 2.979730e-04   p_joint 3.853604e-04

Joint ci ratio: 9.455633e-02	ci left: 3.678093e-04	ci right 4.045313e-04	k: 1717	n:4450000
Cons ci ratio: 1.075934e-01	ci left: 2.821553e-04	ci right 3.144558e-04	k: 1326	n:4450000
KS ci ratio: 6.427412e-03	ci left: 7.689137e-02	ci right 7.738739e-02	k: 343269	n:4450000
MAST1   4450000 perm   8320 sec   (535 perm/sec)   p_kst 7.713910e-02   p_cons 2.979775e-04   p_joint 3.858427e-04

Joint ci ratio: 9.452885e-02	ci left: 3.672035e-04	ci right 4.038538e-04	k: 1718	n:4460000
Cons ci ratio: 1.075529e-01	ci left: 2.817408e-04	ci right 3.139810e-04	k: 1327	n:4460000
KS ci ratio: 6.420389e-03	ci left: 7.688753e-02	ci right 7.738298e-02	k: 344022	n:4460000
MAST1   4460000 perm   8353 sec   (534 perm/sec)   p_kst 7.713498e-02   p_cons 2.975336e-04   p_joint 3.852018e-04

Joint ci ratio: 9.441906e-02	ci left: 3.672558e-04	ci right 4.038663e-04	k: 1722	n:4470000
Cons ci ratio: 1.074317e-01	ci left: 2.817636e-04	ci right 3.139678e-04	k: 1330	n:4470000
KS ci ratio: 6.413489e-03	ci left: 7.688147e-02	ci right 7.737635e-02	k: 344765	n:4470000
MAST1   4470000 perm   8386 sec   (533 perm/sec)   p_kst 7.712864e-02   p_cons 2.975391e-04   p_joint 3.852349e-04

Joint ci ratio: 9.428235e-02	ci left: 3.675257e-04	ci right 4.041072e-04	k: 1727	n:4480000
Cons ci ratio: 1.073511e-01	ci left: 2.815691e-04	ci right 3.137254e-04	k: 1332	n:4480000
KS ci ratio: 6.406189e-03	ci left: 7.688480e-02	ci right 7.737914e-02	k: 345550	n:4480000
MAST1   4480000 perm   8419 sec   (532 perm/sec)   p_kst 7.713170e-02   p_cons 2.973214e-04   p_joint 3.854911e-04

Joint ci ratio: 9.409193e-02	ci left: 3.682295e-04	ci right 4.048029e-04	k: 1734	n:4490000
Cons ci ratio: 1.071102e-01	ci left: 2.822425e-04	ci right 3.143988e-04	k: 1338	n:4490000
KS ci ratio: 6.399105e-03	ci left: 7.688389e-02	ci right 7.737768e-02	k: 346316	n:4490000
MAST1   4490000 perm   8453 sec   (531 perm/sec)   p_kst 7.713051e-02   p_cons 2.979955e-04   p_joint 3.861915e-04

Joint ci ratio: 9.401069e-02	ci left: 3.680622e-04	ci right 4.045857e-04	k: 1737	n:4500000
Cons ci ratio: 1.070303e-01	ci left: 2.820478e-04	ci right 3.141565e-04	k: 1340	n:4500000
KS ci ratio: 6.392233e-03	ci left: 7.687878e-02	ci right 7.737199e-02	k: 347063	n:4500000
MAST1   4500000 perm   8487 sec   (530 perm/sec)   p_kst 7.712511e-02   p_cons 2.977778e-04   p_joint 3.860000e-04

Joint ci ratio: 9.387574e-02	ci left: 3.683287e-04	ci right 4.048233e-04	k: 1742	n:4510000
Cons ci ratio: 1.068711e-01	ci left: 2.822856e-04	ci right 3.143705e-04	k: 1344	n:4510000
KS ci ratio: 6.385055e-03	ci left: 7.688099e-02	ci right 7.737366e-02	k: 347843	n:4510000
MAST1   4510000 perm   8520 sec   (529 perm/sec)   p_kst 7.712705e-02   p_cons 2.980044e-04   p_joint 3.862528e-04

Joint ci ratio: 9.371456e-02	ci left: 3.688101e-04	ci right 4.052862e-04	k: 1748	n:4520000
Cons ci ratio: 1.067521e-01	ci left: 2.823071e-04	ci right 3.143564e-04	k: 1347	n:4520000
KS ci ratio: 6.378090e-03	ci left: 7.687899e-02	ci right 7.737111e-02	k: 348604	n:4520000
MAST1   4520000 perm   8554 sec   (528 perm/sec)   p_kst 7.712478e-02   p_cons 2.980088e-04   p_joint 3.867257e-04

Joint ci ratio: 9.363430e-02	ci left: 3.686427e-04	ci right 4.050693e-04	k: 1751	n:4530000
Cons ci ratio: 1.066335e-01	ci left: 2.823285e-04	ci right 3.143424e-04	k: 1350	n:4530000
KS ci ratio: 6.370990e-03	ci left: 7.688053e-02	ci right 7.737211e-02	k: 349381	n:4530000
MAST1   4530000 perm   8588 sec   (527 perm/sec)   p_kst 7.712605e-02   p_cons 2.980132e-04   p_joint 3.865342e-04

Joint ci ratio: 9.352759e-02	ci left: 3.686911e-04	ci right 4.050788e-04	k: 1755	n:4540000
Cons ci ratio: 1.064760e-01	ci left: 2.825642e-04	ci right 3.145546e-04	k: 1354	n:4540000
KS ci ratio: 6.364543e-03	ci left: 7.686798e-02	ci right 7.735899e-02	k: 350094	n:4540000
MAST1   4540000 perm   8622 sec   (527 perm/sec)   p_kst 7.711322e-02   p_cons 2.982379e-04   p_joint 3.865639e-04

Joint ci ratio: 9.344781e-02	ci left: 3.685248e-04	ci right 4.048632e-04	k: 1758	n:4550000
Cons ci ratio: 1.062800e-01	ci left: 2.830128e-04	ci right 3.149914e-04	k: 1359	n:4550000
KS ci ratio: 6.357458e-03	ci left: 7.687020e-02	ci right 7.736067e-02	k: 350874	n:4550000
MAST1   4550000 perm   8656 sec   (526 perm/sec)   p_kst 7.711516e-02   p_cons 2.986813e-04   p_joint 3.863736e-04

Joint ci ratio: 9.339475e-02	ci left: 3.681449e-04	ci right 4.044242e-04	k: 1760	n:4560000
Cons ci ratio: 1.062020e-01	ci left: 2.828191e-04	ci right 3.147508e-04	k: 1361	n:4560000
KS ci ratio: 6.350270e-03	ci left: 7.687525e-02	ci right 7.736520e-02	k: 351667	n:4560000
MAST1   4560000 perm   8690 sec   (525 perm/sec)   p_kst 7.711996e-02   p_cons 2.984649e-04   p_joint 3.859649e-04

Joint ci ratio: 9.336827e-02	ci left: 3.675531e-04	ci right 4.037632e-04	k: 1761	n:4570000
Cons ci ratio: 1.061630e-01	ci left: 2.824133e-04	ci right 3.142867e-04	k: 1362	n:4570000
KS ci ratio: 6.343583e-03	ci left: 7.686958e-02	ci right 7.735897e-02	k: 352411	n:4570000
MAST1   4570000 perm   8724 sec   (524 perm/sec)   p_kst 7.711400e-02   p_cons 2.980306e-04   p_joint 3.853392e-04

Joint ci ratio: 9.328890e-02	ci left: 3.673903e-04	ci right 4.035519e-04	k: 1764	n:4580000
Cons ci ratio: 1.060076e-01	ci left: 2.826468e-04	ci right 3.144970e-04	k: 1366	n:4580000
KS ci ratio: 6.336199e-03	ci left: 7.688006e-02	ci right 7.736895e-02	k: 353229	n:4580000
MAST1   4580000 perm   8758 sec   (523 perm/sec)   p_kst 7.712424e-02   p_cons 2.982533e-04   p_joint 3.851528e-04

Joint ci ratio: 9.323611e-02	ci left: 3.670154e-04	ci right 4.031186e-04	k: 1766	n:4590000
Cons ci ratio: 1.060076e-01	ci left: 2.820311e-04	ci right 3.138119e-04	k: 1366	n:4590000
KS ci ratio: 6.329421e-03	ci left: 7.687745e-02	ci right 7.736579e-02	k: 353987	n:4590000
MAST1   4590000 perm   8793 sec   (522 perm/sec)   p_kst 7.712135e-02   p_cons 2.976035e-04   p_joint 3.847495e-04

Joint ci ratio: 9.313075e-02	ci left: 3.670669e-04	ci right 4.031321e-04	k: 1770	n:4600000
Cons ci ratio: 1.058529e-01	ci left: 2.822645e-04	ci right 3.140223e-04	k: 1370	n:4600000
KS ci ratio: 6.322685e-03	ci left: 7.687441e-02	ci right 7.736221e-02	k: 354743	n:4600000
MAST1   4600000 perm   8827 sec   (521 perm/sec)   p_kst 7.711804e-02   p_cons 2.978261e-04   p_joint 3.847826e-04

Joint ci ratio: 9.297337e-02	ci left: 3.675419e-04	ci right 4.035894e-04	k: 1776	n:4610000
Cons ci ratio: 1.056988e-01	ci left: 2.824969e-04	ci right 3.142317e-04	k: 1374	n:4610000
KS ci ratio: 6.315816e-03	ci left: 7.687485e-02	ci right 7.736212e-02	k: 355515	n:4610000
MAST1   4610000 perm   8861 sec   (520 perm/sec)   p_kst 7.711822e-02   p_cons 2.980477e-04   p_joint 3.852495e-04

Joint ci ratio: 9.294725e-02	ci left: 3.669577e-04	ci right 4.029373e-04	k: 1777	n:4620000
Cons ci ratio: 1.056220e-01	ci left: 2.823069e-04	ci right 3.139959e-04	k: 1376	n:4620000
KS ci ratio: 6.308902e-03	ci left: 7.687680e-02	ci right 7.736355e-02	k: 356294	n:4620000
MAST1   4620000 perm   8895 sec   (519 perm/sec)   p_kst 7.711991e-02   p_cons 2.978355e-04   p_joint 3.846320e-04

Joint ci ratio: 9.286895e-02	ci left: 3.667981e-04	ci right 4.027301e-04	k: 1780	n:4630000
Cons ci ratio: 1.055837e-01	ci left: 2.819074e-04	ci right 3.135394e-04	k: 1377	n:4630000
KS ci ratio: 6.302154e-03	ci left: 7.687551e-02	ci right 7.736173e-02	k: 357058	n:4630000
MAST1   4630000 perm   8929 sec   (519 perm/sec)   p_kst 7.711836e-02   p_cons 2.974082e-04   p_joint 3.844492e-04

Joint ci ratio: 9.284291e-02	ci left: 3.662181e-04	ci right 4.020826e-04	k: 1781	n:4640000
Cons ci ratio: 1.055454e-01	ci left: 2.815097e-04	ci right 3.130849e-04	k: 1378	n:4640000
KS ci ratio: 6.295904e-03	ci left: 7.686347e-02	ci right 7.734913e-02	k: 357772	n:4640000
MAST1   4640000 perm   8963 sec   (518 perm/sec)   p_kst 7.710603e-02   p_cons 2.969828e-04   p_joint 3.838362e-04

Joint ci ratio: 9.273889e-02	ci left: 3.662707e-04	ci right 4.020981e-04	k: 1785	n:4650000
Cons ci ratio: 1.053927e-01	ci left: 2.817418e-04	ci right 3.132945e-04	k: 1382	n:4650000
KS ci ratio: 6.289274e-03	ci left: 7.686050e-02	ci right 7.734562e-02	k: 358528	n:4650000
MAST1   4650000 perm   8997 sec   (517 perm/sec)   p_kst 7.710280e-02   p_cons 2.972043e-04   p_joint 3.838710e-04

Joint ci ratio: 9.260933e-02	ci left: 3.665329e-04	ci right 4.023331e-04	k: 1790	n:4660000
Cons ci ratio: 1.052785e-01	ci left: 2.817641e-04	ci right 3.132829e-04	k: 1385	n:4660000
KS ci ratio: 6.282996e-03	ci left: 7.685004e-02	ci right 7.733461e-02	k: 359249	n:4660000
MAST1   4660000 perm   9031 sec   (516 perm/sec)   p_kst 7.709206e-02   p_cons 2.972103e-04   p_joint 3.841202e-04

Joint ci ratio: 9.250609e-02	ci left: 3.665847e-04	ci right 4.023479e-04	k: 1794	n:4670000
Cons ci ratio: 1.052027e-01	ci left: 2.815777e-04	ci right 3.130516e-04	k: 1387	n:4670000
KS ci ratio: 6.276491e-03	ci left: 7.684518e-02	ci right 7.732922e-02	k: 359996	n:4670000
MAST1   4670000 perm   9066 sec   (515 perm/sec)   p_kst 7.708694e-02   p_cons 2.970021e-04   p_joint 3.841542e-04

Joint ci ratio: 9.250613e-02	ci left: 3.658014e-04	ci right 4.014882e-04	k: 1794	n:4680000
Cons ci ratio: 1.052027e-01	ci left: 2.809760e-04	ci right 3.123827e-04	k: 1387	n:4680000
KS ci ratio: 6.270063e-03	ci left: 7.683906e-02	ci right 7.732257e-02	k: 360737	n:4680000
MAST1   4680000 perm   9101 sec   (514 perm/sec)   p_kst 7.708056e-02   p_cons 2.963675e-04   p_joint 3.833333e-04

Joint ci ratio: 9.237754e-02	ci left: 3.660629e-04	ci right 4.017229e-04	k: 1799	n:4690000
Cons ci ratio: 1.050892e-01	ci left: 2.809998e-04	ci right 3.123731e-04	k: 1390	n:4690000
KS ci ratio: 6.263458e-03	ci left: 7.683745e-02	ci right 7.732043e-02	k: 361499	n:4690000
MAST1   4690000 perm   9135 sec   (513 perm/sec)   p_kst 7.707868e-02   p_cons 2.963753e-04   p_joint 3.835821e-04

Joint ci ratio: 9.224950e-02	ci left: 3.663233e-04	ci right 4.019565e-04	k: 1804	n:4700000
Cons ci ratio: 1.049008e-01	ci left: 2.814378e-04	ci right 3.128002e-04	k: 1395	n:4700000
KS ci ratio: 6.256424e-03	ci left: 7.684603e-02	ci right 7.732853e-02	k: 362309	n:4700000
MAST1   4700000 perm   9170 sec   (513 perm/sec)   p_kst 7.708702e-02   p_cons 2.968085e-04   p_joint 3.838298e-04

Joint ci ratio: 9.214745e-02	ci left: 3.663752e-04	ci right 4.019719e-04	k: 1808	n:4710000
Cons ci ratio: 1.047508e-01	ci left: 2.816673e-04	ci right 3.130076e-04	k: 1399	n:4710000
KS ci ratio: 6.250151e-03	ci left: 7.683784e-02	ci right 7.731979e-02	k: 363040	n:4710000
MAST1   4710000 perm   9205 sec   (512 perm/sec)   p_kst 7.707856e-02   p_cons 2.970276e-04   p_joint 3.838641e-04

Joint ci ratio: 9.191903e-02	ci left: 3.674619e-04	ci right 4.030709e-04	k: 1817	n:4720000
Cons ci ratio: 1.044899e-01	ci left: 2.825148e-04	ci right 3.138663e-04	k: 1406	n:4720000
KS ci ratio: 6.243460e-03	ci left: 7.683962e-02	ci right 7.732107e-02	k: 363818	n:4720000
MAST1   4720000 perm   9240 sec   (511 perm/sec)   p_kst 7.708008e-02   p_cons 2.978814e-04   p_joint 3.849576e-04

Joint ci ratio: 9.181807e-02	ci left: 3.675113e-04	ci right 4.030839e-04	k: 1821	n:4730000
Cons ci ratio: 1.043417e-01	ci left: 2.827411e-04	ci right 3.140705e-04	k: 1410	n:4730000
KS ci ratio: 6.236613e-03	ci left: 7.684540e-02	ci right 7.732636e-02	k: 364615	n:4730000
MAST1   4730000 perm   9275 sec   (510 perm/sec)   p_kst 7.708562e-02   p_cons 2.980973e-04   p_joint 3.849894e-04

Joint ci ratio: 9.169234e-02	ci left: 3.677666e-04	ci right 4.033125e-04	k: 1826	n:4740000
Cons ci ratio: 1.041941e-01	ci left: 2.829664e-04	ci right 3.142738e-04	k: 1414	n:4740000
KS ci ratio: 6.230076e-03	ci left: 7.684463e-02	ci right 7.732508e-02	k: 365381	n:4740000
MAST1   4740000 perm   9309 sec   (509 perm/sec)   p_kst 7.708460e-02   p_cons 2.983122e-04   p_joint 3.852321e-04

Joint ci ratio: 9.159212e-02	ci left: 3.678151e-04	ci right 4.033248e-04	k: 1830	n:4750000
Cons ci ratio: 1.040838e-01	ci left: 2.829859e-04	ci right 3.142601e-04	k: 1417	n:4750000
KS ci ratio: 6.223780e-03	ci left: 7.683882e-02	ci right 7.731875e-02	k: 366123	n:4750000
MAST1   4750000 perm   9343 sec   (508 perm/sec)   p_kst 7.707853e-02   p_cons 2.983158e-04   p_joint 3.852632e-04

Joint ci ratio: 9.151719e-02	ci left: 3.676582e-04	ci right 4.031222e-04	k: 1833	n:4760000
Cons ci ratio: 1.040471e-01	ci left: 2.825960e-04	ci right 3.138155e-04	k: 1418	n:4760000
KS ci ratio: 6.217228e-03	ci left: 7.683933e-02	ci right 7.731875e-02	k: 366895	n:4760000
MAST1   4760000 perm   9379 sec   (508 perm/sec)   p_kst 7.707878e-02   p_cons 2.978992e-04   p_joint 3.850840e-04

Joint ci ratio: 9.146735e-02	ci left: 3.672972e-04	ci right 4.027060e-04	k: 1835	n:4770000
Cons ci ratio: 1.039739e-01	ci left: 2.824119e-04	ci right 3.135878e-04	k: 1420	n:4770000
KS ci ratio: 6.210587e-03	ci left: 7.684235e-02	ci right 7.732127e-02	k: 367679	n:4770000
MAST1   4770000 perm   9414 sec   (507 perm/sec)   p_kst 7.708155e-02   p_cons 2.976939e-04   p_joint 3.846960e-04

Joint ci ratio: 9.146738e-02	ci left: 3.665287e-04	ci right 4.018635e-04	k: 1835	n:4780000
Cons ci ratio: 1.039739e-01	ci left: 2.818211e-04	ci right 3.129318e-04	k: 1420	n:4780000
KS ci ratio: 6.203876e-03	ci left: 7.684744e-02	ci right 7.732588e-02	k: 368473	n:4780000
MAST1   4780000 perm   9450 sec   (506 perm/sec)   p_kst 7.708640e-02   p_cons 2.970711e-04   p_joint 3.838912e-04

Joint ci ratio: 9.134308e-02	ci left: 3.667835e-04	ci right 4.020922e-04	k: 1840	n:4790000
Cons ci ratio: 1.037915e-01	ci left: 2.822494e-04	ci right 3.133494e-04	k: 1425	n:4790000
KS ci ratio: 6.197395e-03	ci left: 7.684772e-02	ci right 7.732565e-02	k: 369244	n:4790000
MAST1   4790000 perm   9485 sec   (505 perm/sec)   p_kst 7.708643e-02   p_cons 2.974948e-04   p_joint 3.841336e-04

Joint ci ratio: 9.124401e-02	ci left: 3.668337e-04	ci right 4.021069e-04	k: 1844	n:4800000
Cons ci ratio: 1.036099e-01	ci left: 2.826761e-04	ci right 3.137653e-04	k: 1430	n:4800000
KS ci ratio: 6.190899e-03	ci left: 7.684883e-02	ci right 7.732627e-02	k: 370019	n:4800000
MAST1   4800000 perm   9521 sec   (504 perm/sec)   p_kst 7.708729e-02   p_cons 2.979167e-04   p_joint 3.841667e-04

Joint ci ratio: 9.116992e-02	ci left: 3.666805e-04	ci right 4.019088e-04	k: 1847	n:4810000
Cons ci ratio: 1.035015e-01	ci left: 2.826959e-04	ci right 3.137528e-04	k: 1433	n:4810000
KS ci ratio: 6.184025e-03	ci left: 7.685907e-02	ci right 7.733604e-02	k: 370838	n:4810000
MAST1   4810000 perm   9557 sec   (503 perm/sec)   p_kst 7.709730e-02   p_cons 2.979210e-04   p_joint 3.839917e-04

Joint ci ratio: 9.092419e-02	ci left: 3.679472e-04	ci right 4.031969e-04	k: 1857	n:4820000
Cons ci ratio: 1.032140e-01	ci left: 2.837263e-04	ci right 3.148045e-04	k: 1441	n:4820000
KS ci ratio: 6.177850e-03	ci left: 7.685373e-02	ci right 7.733019e-02	k: 371582	n:4820000
MAST1   4820000 perm   9593 sec   (502 perm/sec)   p_kst 7.709170e-02   p_cons 2.989627e-04   p_joint 3.852697e-04

Joint ci ratio: 9.082647e-02	ci left: 3.679948e-04	ci right 4.032091e-04	k: 1861	n:4830000
Cons ci ratio: 1.031425e-01	ci left: 2.835423e-04	ci right 3.145775e-04	k: 1443	n:4830000
KS ci ratio: 6.171504e-03	ci left: 7.685275e-02	ci right 7.732871e-02	k: 372347	n:4830000
MAST1   4830000 perm   9628 sec   (502 perm/sec)   p_kst 7.709048e-02   p_cons 2.987578e-04   p_joint 3.853002e-04

Joint ci ratio: 9.080212e-02	ci left: 3.674364e-04	ci right 4.025873e-04	k: 1862	n:4840000
Cons ci ratio: 1.031425e-01	ci left: 2.829564e-04	ci right 3.139275e-04	k: 1443	n:4840000
KS ci ratio: 6.165357e-03	ci left: 7.684765e-02	ci right 7.732311e-02	k: 373092	n:4840000
MAST1   4840000 perm   9664 sec   (501 perm/sec)   p_kst 7.708512e-02   p_cons 2.981405e-04   p_joint 3.847107e-04

Joint ci ratio: 9.072911e-02	ci left: 3.672833e-04	ci right 4.023898e-04	k: 1865	n:4850000
Cons ci ratio: 1.029999e-01	ci left: 2.831765e-04	ci right 3.141262e-04	k: 1447	n:4850000
KS ci ratio: 6.159023e-03	ci left: 7.684731e-02	ci right 7.732227e-02	k: 373860	n:4850000
MAST1   4850000 perm   9700 sec   (500 perm/sec)   p_kst 7.708454e-02   p_cons 2.983505e-04   p_joint 3.845361e-04

Joint ci ratio: 9.065627e-02	ci left: 3.671308e-04	ci right 4.021932e-04	k: 1868	n:4860000
Cons ci ratio: 1.028579e-01	ci left: 2.833957e-04	ci right 3.143241e-04	k: 1451	n:4860000
KS ci ratio: 6.152745e-03	ci left: 7.684614e-02	ci right 7.732061e-02	k: 374624	n:4860000
MAST1   4860000 perm   9736 sec   (499 perm/sec)   p_kst 7.708313e-02   p_cons 2.985597e-04   p_joint 3.843621e-04

Joint ci ratio: 9.060782e-02	ci left: 3.667784e-04	ci right 4.017873e-04	k: 1870	n:4870000
Cons ci ratio: 1.027518e-01	ci left: 2.834139e-04	ci right 3.143105e-04	k: 1454	n:4870000
KS ci ratio: 6.146964e-03	ci left: 7.683391e-02	ci right 7.730786e-02	k: 375334	n:4870000
MAST1   4870000 perm   9773 sec   (498 perm/sec)   p_kst 7.707064e-02   p_cons 2.985626e-04   p_joint 3.839836e-04

Joint ci ratio: 9.043877e-02	ci left: 3.674287e-04	ci right 4.024308e-04	k: 1877	n:4880000
Cons ci ratio: 1.025055e-01	ci left: 2.842308e-04	ci right 3.151377e-04	k: 1461	n:4880000
KS ci ratio: 6.140731e-03	ci left: 7.683258e-02	ci right 7.730604e-02	k: 376097	n:4880000
MAST1   4880000 perm   9809 sec   (498 perm/sec)   p_kst 7.706906e-02   p_cons 2.993852e-04   p_joint 3.846311e-04

Joint ci ratio: 9.031861e-02	ci left: 3.676767e-04	ci right 4.026535e-04	k: 1882	n:4890000
Cons ci ratio: 1.023656e-01	ci left: 2.844466e-04	ci right 3.153322e-04	k: 1465	n:4890000
KS ci ratio: 6.134587e-03	ci left: 7.682962e-02	ci right 7.730258e-02	k: 376852	n:4890000
MAST1   4890000 perm   9845 sec   (497 perm/sec)   p_kst 7.706585e-02   p_cons 2.995910e-04   p_joint 3.848671e-04

Joint ci ratio: 9.012732e-02	ci left: 3.685222e-04	ci right 4.035012e-04	k: 1890	n:4900000
Cons ci ratio: 1.021567e-01	ci left: 2.850592e-04	ci right 3.159444e-04	k: 1471	n:4900000
KS ci ratio: 6.128233e-03	ci left: 7.683197e-02	ci right 7.730445e-02	k: 377633	n:4900000
MAST1   4900000 perm   9881 sec   (496 perm/sec)   p_kst 7.706796e-02   p_cons 3.002041e-04   p_joint 3.857143e-04

Joint ci ratio: 9.003214e-02	ci left: 3.685679e-04	ci right 4.035124e-04	k: 1894	n:4910000
Cons ci ratio: 1.020528e-01	ci left: 2.850741e-04	ci right 3.159276e-04	k: 1474	n:4910000
KS ci ratio: 6.122048e-03	ci left: 7.683085e-02	ci right 7.730285e-02	k: 378397	n:4910000
MAST1   4910000 perm   9918 sec   (495 perm/sec)   p_kst 7.706660e-02   p_cons 3.002037e-04   p_joint 3.857434e-04

Joint ci ratio: 8.991359e-02	ci left: 3.688122e-04	ci right 4.037314e-04	k: 1899	n:4920000
Cons ci ratio: 1.018802e-01	ci left: 2.854850e-04	ci right 3.163276e-04	k: 1479	n:4920000
KS ci ratio: 6.115672e-03	ci left: 7.683461e-02	ci right 7.730614e-02	k: 379185	n:4920000
MAST1   4920000 perm   9954 sec   (494 perm/sec)   p_kst 7.707012e-02   p_cons 3.006098e-04   p_joint 3.859756e-04

Joint ci ratio: 8.984270e-02	ci left: 3.686590e-04	ci right 4.035346e-04	k: 1902	n:4930000
Cons ci ratio: 1.018115e-01	ci left: 2.853013e-04	ci right 3.161020e-04	k: 1481	n:4930000
KS ci ratio: 6.109359e-03	ci left: 7.683734e-02	ci right 7.730839e-02	k: 379968	n:4930000
MAST1   4930000 perm   9991 sec   (493 perm/sec)   p_kst 7.707262e-02   p_cons 3.004057e-04   p_joint 3.858012e-04

Joint ci ratio: 8.963095e-02	ci left: 3.696937e-04	ci right 4.045805e-04	k: 1911	n:4940000
Cons ci ratio: 1.017086e-01	ci left: 2.853156e-04	ci right 3.160848e-04	k: 1484	n:4940000
KS ci ratio: 6.103144e-03	ci left: 7.683824e-02	ci right 7.730882e-02	k: 380742	n:4940000
MAST1   4940000 perm   10027 sec   (493 perm/sec)   p_kst 7.707328e-02   p_cons 3.004049e-04   p_joint 3.868421e-04

Joint ci ratio: 9.048723e-02	ci left: 3.618378e-04	ci right 3.963268e-04	k: 1875	n:4950000
Cons ci ratio: 1.015037e-01	ci left: 2.859205e-04	ci right 3.166892e-04	k: 1490	n:4950000
KS ci ratio: 6.096853e-03	ci left: 7.684135e-02	ci right 7.731147e-02	k: 381527	n:4950000
MAST1   4950000 perm   10064 sec   (492 perm/sec)   p_kst 7.707616e-02   p_cons 3.010101e-04   p_joint 3.787879e-04

Joint ci ratio: 9.039091e-02	ci left: 3.618965e-04	ci right 3.963524e-04	k: 1879	n:4960000
Cons ci ratio: 1.013678e-01	ci left: 2.861300e-04	ci right 3.168776e-04	k: 1494	n:4960000
KS ci ratio: 6.090822e-03	ci left: 7.683882e-02	ci right 7.730845e-02	k: 382284	n:4960000
MAST1   4960000 perm   10101 sec   (491 perm/sec)   p_kst 7.707339e-02   p_cons 3.012097e-04   p_joint 3.788306e-04

Joint ci ratio: 9.039095e-02	ci left: 3.611683e-04	ci right 3.955549e-04	k: 1879	n:4970000
Cons ci ratio: 1.013339e-01	ci left: 2.857504e-04	ci right 3.164463e-04	k: 1495	n:4970000
KS ci ratio: 6.084388e-03	ci left: 7.684614e-02	ci right 7.731532e-02	k: 383090	n:4970000
MAST1   4970000 perm   10137 sec   (490 perm/sec)   p_kst 7.708048e-02   p_cons 3.008048e-04   p_joint 3.780684e-04

Joint ci ratio: 9.029494e-02	ci left: 3.612282e-04	ci right 3.955820e-04	k: 1883	n:4980000
Cons ci ratio: 1.013001e-01	ci left: 2.853723e-04	ci right 3.160168e-04	k: 1496	n:4980000
KS ci ratio: 6.078138e-03	ci left: 7.684962e-02	ci right 7.731834e-02	k: 383877	n:4980000
MAST1   4980000 perm   10174 sec   (489 perm/sec)   p_kst 7.708373e-02   p_cons 3.004016e-04   p_joint 3.781124e-04

Joint ci ratio: 1.040478e-01	ci left: 2.695704e-04	ci right 2.993512e-04	k: 1418	n:4990000
Cons ci ratio: 1.012325e-01	ci left: 2.851911e-04	ci right 3.157944e-04	k: 1498	n:4990000
KS ci ratio: 6.072000e-03	ci left: 7.685089e-02	ci right 7.731914e-02	k: 384653	n:4990000
MAST1   4990000 perm   10211 sec   (489 perm/sec)   p_kst 7.708477e-02   p_cons 3.002004e-04   p_joint 2.841683e-04

Joint ci ratio: 1.040112e-01	ci left: 2.692261e-04	ci right 2.989577e-04	k: 1419	n:5000000
Cons ci ratio: 1.012325e-01	ci left: 2.846207e-04	ci right 3.151628e-04	k: 1498	n:5000000
KS ci ratio: 6.066017e-03	ci left: 7.684896e-02	ci right 7.731673e-02	k: 385413	n:5000000
MAST1   5000000 perm   10248 sec   (488 perm/sec)   p_kst 7.708260e-02   p_cons 2.996000e-04   p_joint 2.838000e-04

Outputting figure to mutsig2_images.part000000000102/MAST1.3_4817_5000000_0.077083_0.0002996_0.0002838.png
                gene_name: MAST1
               theta_stop: 0.10 
                    nperm: 5000000 
                     p_ks: 0.077 
        ci_ks_bounds_left: 0.077 
       ci_ks_bounds_right: 0.077 
                   p_cons: 0.00030 
      ci_cons_bounds_left: 0.00028 
     ci_cons_bounds_right: 0.00032 
                  p_joint: 0.00028 
     ci_joint_bounds_left: 0.00027 
    ci_joint_bounds_right: 0.00030 

Current progress: 66 percent done.
MASTL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.325991e-02	ci left: 4.410133e-01	ci right 4.606154e-01	k: 4508	n:10000
Cons ci ratio: 7.672327e-02	ci left: 1.989967e-01	ci right 2.149743e-01	k: 2069	n:10000
KS ci ratio: 3.154520e-02	ci left: 5.972468e-01	ci right 6.164909e-01	k: 6069	n:10000
MASTL   10000 perm   2 sec   (6659 perm/sec)   p_kst 6.069000e-01   p_cons 2.069000e-01   p_joint 4.508000e-01

Outputting figure to mutsig2_images.part000000000102/MASTL.3_2688_10000_0.6069_0.2069_0.4508.png
                gene_name: MASTL
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 68 percent done.
MATK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.437554e-03	ci left: 9.515867e-01	ci right 9.597452e-01	k: 9558	n:10000
Cons ci ratio: 2.749029e-02	ci left: 6.609875e-01	ci right 6.795132e-01	k: 6703	n:10000
KS ci ratio: 2.946757e-02	ci left: 6.293965e-01	ci right 6.483225e-01	k: 6389	n:10000
MATK   10000 perm   1 sec   (6981 perm/sec)   p_kst 6.389000e-01   p_cons 6.703000e-01   p_joint 9.558000e-01

Outputting figure to mutsig2_images.part000000000102/MATK.3_1655_10000_0.6389_0.6703_0.9558.png
                gene_name: MATK
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 70 percent done.
MATN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.352371e-02	ci left: 1.729074e-01	ci right 1.880792e-01	k: 1804	n:10000
Cons ci ratio: 8.811689e-02	ci left: 1.578715e-01	ci right 1.725241e-01	k: 1651	n:10000
KS ci ratio: 7.543835e-02	ci left: 2.045169e-01	ci right 2.206509e-01	k: 2125	n:10000
MATN3   10000 perm   1 sec   (7342 perm/sec)   p_kst 2.125000e-01   p_cons 1.651000e-01   p_joint 1.804000e-01

Outputting figure to mutsig2_images.part000000000102/MATN3.3_1493_10000_0.2125_0.1651_0.1804.png
                gene_name: MATN3
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.19 

Current progress: 72 percent done.
MAP3K15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.499685e-02	ci left: 7.019041e-01	ci right 7.197729e-01	k: 7109	n:10000
KS ci ratio: 4.733738e-02	ci left: 3.970506e-01	ci right 4.164037e-01	k: 4067	n:10000
MAP3K15   10000 perm   2 sec   (6304 perm/sec)   p_kst 4.067000e-01   p_cons 7.109000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000102/MAP3K15.2_4058_10000_0.4067_0.7109_1.png
                gene_name: MAP3K15
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 74 percent done.
MAP3K7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.228697e-02	ci left: 9.048375e-01	ci right 9.161220e-01	k: 9106	n:10000
Cons ci ratio: 8.859915e-02	ci left: 1.563986e-01	ci right 1.709979e-01	k: 1636	n:10000
KS ci ratio: 1.558138e-02	ci left: 8.567172e-01	ci right 8.702703e-01	k: 8636	n:10000
MAP3K7   10000 perm   1 sec   (7296 perm/sec)   p_kst 8.636000e-01   p_cons 1.636000e-01   p_joint 9.106000e-01

Outputting figure to mutsig2_images.part000000000102/MAP3K7.2_1889_10000_0.8636_0.1636_0.9106.png
                gene_name: MAP3K7
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.92 

Current progress: 76 percent done.
MAP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.020242e-02	ci left: 4.774582e-01	ci right 4.971492e-01	k: 4873	n:10000
Cons ci ratio: 5.107307e-03	ci left: 9.807002e-01	ci right 9.858126e-01	k: 9834	n:10000
KS ci ratio: 5.544133e-02	ci left: 3.239612e-01	ci right 3.425360e-01	k: 3332	n:10000
MAP6   10000 perm   1 sec   (6916 perm/sec)   p_kst 3.332000e-01   p_cons 9.834000e-01   p_joint 4.873000e-01

Outputting figure to mutsig2_images.part000000000102/MAP6.2_2462_10000_0.3332_0.9834_0.4873.png
                gene_name: MAP6
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 78 percent done.
MAP7D1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.023188e-02	ci left: 6.174357e-01	ci right 6.364903e-01	k: 6270	n:10000
KS ci ratio: 8.790262e-03	ci left: 9.478349e-01	ci right 9.562992e-01	k: 9522	n:10000
MAP7D1   10000 perm   1 sec   (6907 perm/sec)   p_kst 9.522000e-01   p_cons 6.270000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000102/MAP7D1.2_2594_10000_0.9522_0.627_1.png
                gene_name: MAP7D1
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
MAP9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.303600e-02	ci left: 7.346186e-01	ci right 7.518395e-01	k: 7433	n:10000
Cons ci ratio: 1.850394e-02	ci left: 8.100922e-01	ci right 8.253223e-01	k: 8178	n:10000
KS ci ratio: 6.480061e-02	ci left: 2.591396e-01	ci right 2.765958e-01	k: 2678	n:10000
MAP9   10000 perm   1 sec   (7260 perm/sec)   p_kst 2.678000e-01   p_cons 8.178000e-01   p_joint 7.433000e-01

Outputting figure to mutsig2_images.part000000000102/MAP9.2_1996_10000_0.2678_0.8178_0.7433.png
                gene_name: MAP9
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 82 percent done.
MAPK11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.255920e-02	ci left: 4.490965e-01	ci right 4.687274e-01	k: 4589	n:10000
Cons ci ratio: 5.160444e-02	ci left: 3.563500e-01	ci right 3.753282e-01	k: 3658	n:10000
KS ci ratio: 5.107490e-02	ci left: 3.611229e-01	ci right 3.801525e-01	k: 3706	n:10000
MAPK11   10000 perm   1 sec   (7685 perm/sec)   p_kst 3.706000e-01   p_cons 3.658000e-01   p_joint 4.589000e-01

Outputting figure to mutsig2_images.part000000000102/MAPK11.2_1143_10000_0.3706_0.3658_0.4589.png
                gene_name: MAPK11
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 84 percent done.
MAPK13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.341162e-03	ci left: 9.624696e-01	ci right 9.696556e-01	k: 9662	n:10000
KS ci ratio: 8.840551e-02	ci left: 1.569877e-01	ci right 1.716084e-01	k: 1642	n:10000
MAPK13   10000 perm   1 sec   (8014 perm/sec)   p_kst 1.642000e-01   p_cons 9.662000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000102/MAPK13.2_1146_10000_0.1642_0.9662_1.png
                gene_name: MAPK13
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
MAPK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.407264e-01	ci left: 6.691220e-02	ci right 7.713880e-02	k: 719	n:10000
Cons ci ratio: 1.519441e-01	ci left: 5.764078e-02	ci right 6.721608e-02	k: 623	n:10000
KS ci ratio: 4.469450e-02	ci left: 4.249543e-01	ci right 4.444837e-01	k: 4347	n:10000
MAPK4   10000 perm   1 sec   (7361 perm/sec)   p_kst 4.347000e-01   p_cons 6.230000e-02   p_joint 7.190000e-02

Joint ci ratio: 1.012254e-01	ci left: 6.620866e-02	ci right 7.331704e-02	k: 1394	n:20000
Cons ci ratio: 1.034344e-01	ci left: 6.352427e-02	ci right 7.050225e-02	k: 1339	n:20000
KS ci ratio: 3.173874e-02	ci left: 4.257688e-01	ci right 4.395507e-01	k: 8653	n:20000
MAPK4   20000 perm   3 sec   (6522 perm/sec)   p_kst 4.326500e-01   p_cons 6.695000e-02   p_joint 6.970000e-02

Joint ci ratio: 8.253425e-02	ci left: 6.703978e-02	ci right 7.284384e-02	k: 2097	n:30000
Cons ci ratio: 8.383035e-02	ci left: 6.507850e-02	ci right 7.080552e-02	k: 2037	n:30000
KS ci ratio: 2.596555e-02	ci left: 4.260853e-01	ci right 4.373279e-01	k: 12951	n:30000
MAPK4   30000 perm   5 sec   (6217 perm/sec)   p_kst 4.317000e-01   p_cons 6.790000e-02   p_joint 6.990000e-02

Outputting figure to mutsig2_images.part000000000102/MAPK4.2_1784_30000_0.4317_0.0679_0.0699.png
                gene_name: MAPK4
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.068 
      ci_cons_bounds_left: 0.065 
     ci_cons_bounds_right: 0.071 
                  p_joint: 0.070 
     ci_joint_bounds_left: 0.067 
    ci_joint_bounds_right: 0.073 

Current progress: 88 percent done.
MAPK8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.289569e-02	ci left: 8.964156e-01	ci right 9.081488e-01	k: 9024	n:10000
Cons ci ratio: 5.751282e-02	ci left: 3.079837e-01	ci right 3.263229e-01	k: 3171	n:10000
KS ci ratio: 8.606556e-02	ci left: 1.643550e-01	ci right 1.792367e-01	k: 1717	n:10000
MAPK8   10000 perm   1 sec   (7918 perm/sec)   p_kst 1.717000e-01   p_cons 3.171000e-01   p_joint 9.024000e-01

Outputting figure to mutsig2_images.part000000000102/MAPK8.2_1409_10000_0.1717_0.3171_0.9024.png
                gene_name: MAPK8
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 90 percent done.
MAPK8IP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.526235e-02	ci left: 1.378591e-01	ci right 1.517485e-01	k: 1447	n:10000
Cons ci ratio: 2.228902e-01	ci left: 2.664945e-02	ci right 3.342800e-02	k: 299	n:10000
KS ci ratio: 5.455513e-02	ci left: 3.311104e-01	ci right 3.497826e-01	k: 3404	n:10000
MAPK8IP1   10000 perm   1 sec   (7417 perm/sec)   p_kst 3.404000e-01   p_cons 2.990000e-02   p_joint 1.447000e-01

Joint ci ratio: 1.661784e-02	ci left: 7.294290e-01	ci right 7.417024e-01	k: 14712	n:20000
Cons ci ratio: 1.491115e-01	ci left: 3.090466e-02	ci right 3.593219e-02	k: 667	n:20000
KS ci ratio: 3.842218e-02	ci left: 3.356727e-01	ci right 3.488732e-01	k: 6845	n:20000
MAPK8IP1   20000 perm   3 sec   (6579 perm/sec)   p_kst 3.422500e-01   p_cons 3.335000e-02   p_joint 7.356000e-01

Joint ci ratio: 1.658265e-02	ci left: 6.452407e-01	ci right 6.560635e-01	k: 19520	n:30000
Cons ci ratio: 1.221922e-01	ci left: 3.113662e-02	ci right 3.522111e-02	k: 994	n:30000
KS ci ratio: 3.141109e-02	ci left: 3.363320e-01	ci right 3.470987e-01	k: 10251	n:30000
MAPK8IP1   30000 perm   5 sec   (6253 perm/sec)   p_kst 3.417000e-01   p_cons 3.313333e-02   p_joint 6.506667e-01

Joint ci ratio: 1.523359e-02	ci left: 6.186303e-01	ci right 6.281517e-01	k: 24936	n:40000
Cons ci ratio: 1.074093e-01	ci left: 3.049156e-02	ci right 3.397679e-02	k: 1288	n:40000
KS ci ratio: 2.708281e-02	ci left: 3.390446e-01	ci right 3.483781e-01	k: 13748	n:40000
MAPK8IP1   40000 perm   7 sec   (6037 perm/sec)   p_kst 3.437000e-01   p_cons 3.220000e-02   p_joint 6.234000e-01

Joint ci ratio: 2.629195e-02	ci left: 3.036956e-01	ci right 3.118067e-01	k: 15387	n:50000
Cons ci ratio: 9.561868e-02	ci left: 3.096291e-02	ci right 3.409168e-02	k: 1625	n:50000
KS ci ratio: 2.423998e-02	ci left: 3.392371e-01	ci right 3.475811e-01	k: 17170	n:50000
MAPK8IP1   50000 perm   9 sec   (5866 perm/sec)   p_kst 3.434000e-01   p_cons 3.250000e-02   p_joint 3.077400e-01

Outputting figure to mutsig2_images.part000000000102/MAPK8IP1.2_2184_50000_0.3434_0.0325_0.30774.png
                gene_name: MAPK8IP1
               theta_stop: 0.096 
                    nperm: 50000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.033 
      ci_cons_bounds_left: 0.031 
     ci_cons_bounds_right: 0.034 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 92 percent done.
MAPKAPK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.184721e-02	ci left: 7.545395e-01	ci right 7.713071e-01	k: 7630	n:10000
KS ci ratio: 3.734874e-02	ci left: 5.142557e-01	ci right 5.339302e-01	k: 5241	n:10000
MAPKAPK2   10000 perm   1 sec   (7693 perm/sec)   p_kst 5.241000e-01   p_cons 7.630000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000102/MAPKAPK2.2_1301_10000_0.5241_0.763_1.png
                gene_name: MAPKAPK2
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
MAPKBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.125939e-01	ci left: 1.019814e-01	ci right 1.142479e-01	k: 1080	n:10000
KS ci ratio: 6.221075e-02	ci left: 2.752748e-01	ci right 2.930511e-01	k: 2841	n:10000
MAPKBP1   10000 perm   2 sec   (6043 perm/sec)   p_kst 2.841000e-01   p_cons 1.080000e-01   p_joint 1

Joint ci ratio: 3.136977e-02	ci left: 4.315076e-01	ci right 4.453103e-01	k: 8768	n:20000
Cons ci ratio: 8.079552e-02	ci left: 1.010296e-01	ci right 1.095855e-01	k: 2105	n:20000
KS ci ratio: 4.408194e-02	ci left: 2.770620e-01	ci right 2.896011e-01	k: 5666	n:20000
MAPKBP1   20000 perm   4 sec   (5403 perm/sec)   p_kst 2.833000e-01   p_cons 1.052500e-01   p_joint 4.384000e-01

Outputting figure to mutsig2_images.part000000000102/MAPKBP1.2_4669_20000_0.2833_0.10525_0.4384.png
                gene_name: MAPKBP1
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 96 percent done.
MAPRE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.115267e-01	ci left: 2.968021e-02	ci right 3.679509e-02	k: 331	n:10000
Cons ci ratio: 2.198857e-01	ci left: 2.740624e-02	ci right 3.427066e-02	k: 307	n:10000
KS ci ratio: 4.863654e-02	ci left: 3.841063e-01	ci right 4.033556e-01	k: 3937	n:10000
MAPRE1   10000 perm   1 sec   (7599 perm/sec)   p_kst 3.937000e-01   p_cons 3.070000e-02   p_joint 3.310000e-02

Joint ci ratio: 1.710052e-01	ci left: 2.340739e-02	ci right 2.783199e-02	k: 511	n:20000
Cons ci ratio: 1.530674e-01	ci left: 2.931517e-02	ci right 3.422220e-02	k: 634	n:20000
KS ci ratio: 3.426167e-02	ci left: 3.887640e-01	ci right 4.023664e-01	k: 7911	n:20000
MAPRE1   20000 perm   3 sec   (6784 perm/sec)   p_kst 3.955500e-01   p_cons 3.170000e-02   p_joint 2.555000e-02

Joint ci ratio: 1.397197e-01	ci left: 2.377778e-02	ci right 2.738156e-02	k: 766	n:30000
Cons ci ratio: 1.278863e-01	ci left: 2.842155e-02	ci right 3.233676e-02	k: 910	n:30000
KS ci ratio: 2.807416e-02	ci left: 3.883315e-01	ci right 3.994224e-01	k: 11816	n:30000
MAPRE1   30000 perm   5 sec   (6446 perm/sec)   p_kst 3.938667e-01   p_cons 3.033333e-02   p_joint 2.553333e-02

Joint ci ratio: 8.683652e-02	ci left: 4.636617e-02	ci right 5.059968e-02	k: 1938	n:40000
Cons ci ratio: 1.108316e-01	ci left: 2.864186e-02	ci right 3.202677e-02	k: 1212	n:40000
KS ci ratio: 2.442145e-02	ci left: 3.869618e-01	ci right 3.965539e-01	k: 15670	n:40000
MAPRE1   40000 perm   6 sec   (6200 perm/sec)   p_kst 3.917500e-01   p_cons 3.030000e-02   p_joint 4.845000e-02

Joint ci ratio: 7.117198e-02	ci left: 5.516059e-02	ci right 5.925101e-02	k: 2859	n:50000
Cons ci ratio: 9.827376e-02	ci left: 2.932240e-02	ci right 3.237239e-02	k: 1541	n:50000
KS ci ratio: 2.188427e-02	ci left: 3.865795e-01	ci right 3.951532e-01	k: 19543	n:50000
MAPRE1   50000 perm   8 sec   (6046 perm/sec)   p_kst 3.908600e-01   p_cons 3.082000e-02   p_joint 5.718000e-02

Outputting figure to mutsig2_images.part000000000102/MAPRE1.2_831_50000_0.39086_0.03082_0.05718.png
                gene_name: MAPRE1
               theta_stop: 0.098 
                    nperm: 50000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.031 
      ci_cons_bounds_left: 0.029 
     ci_cons_bounds_right: 0.032 
                  p_joint: 0.057 
     ci_joint_bounds_left: 0.055 
    ci_joint_bounds_right: 0.059 

Current progress: 98 percent done.
MARCH8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.737651e-02	ci left: 8.283916e-01	ci right 8.430123e-01	k: 8358	n:10000
KS ci ratio: 1.732587e-02	ci left: 8.292056e-01	ci right 8.437978e-01	k: 8366	n:10000
MARCH8   10000 perm   1 sec   (7836 perm/sec)   p_kst 8.366000e-01   p_cons 8.358000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000102/MARCH8.2_900_10000_0.8366_0.8358_1.png
                gene_name: MARCH8
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000102
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 102 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1725>
Subject: Job 8004260: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1725>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000103> was used as the working directory.
Started at Sun Nov 11 15:08:12 2012
Results reported at Sun Nov 11 15:22:00 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000103.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000103.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 103  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000103.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    831.33 sec.
    Max Memory :      4847 MB
    Max Swap   :      7153 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
103
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 103
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 103: processing genes 9229 - 9318
Calculating significance of each gene.
Using projection method.
9229	MAX	1
9230	MAZ	2.400953e-01
9231	MB	2.476672e-01
9232	MBD1	5.467043e-01
9233	MBD2	5.106295e-01
9234	MBD3	1
9235	MBD3L1	2.082293e-01
9236	MBD4	6.745731e-01
9237	MBD5	5.021469e-02
9238	MBD6	9.694002e-01
9239	MBIP	2.102693e-01
9240	MBL2	3.517000e-02
9241	MBLAC1	5.764544e-01
9242	MBLAC2	1
9243	MBNL1	4.790222e-01
9244	MBNL2	4.084098e-01
9245	MBNL3	6.598820e-01
9246	MBOAT1	1
9247	MBOAT2	1
9248	MBOAT7	5.528797e-01
9249	MBP	4.996110e-01
9250	MBTD1	6.977960e-01
9251	MBTPS1	8.303851e-01
9252	MBTPS2	5.054639e-01
9253	MC1R	1
9254	MC2R	4.126825e-01
9255	MC3R	2.399733e-01
9256	MC4R	2.803157e-01
9257	MC5R	1.532210e-01
9258	MCAM	1
9259	MCART1	4.128103e-01
9260	MCART2	1
9261	MCART6	1
9262	MCAT	5.817273e-01
9263	MCC	7.050765e-01
9264	MCCC1	2.617441e-01
9265	MCCC2	8.296356e-01
9266	MCCD1	1
9267	MCEE	5.095464e-01
9268	MCF2	9.439806e-01
9269	MCF2L	9.551617e-01
9270	MCF2L2	2.225495e-02
9271	MCFD2	2.094002e-01
9272	MCHR1	1
9273	MCHR2	1.850432e-03
9274	MCL1	3.086871e-01
9275	MCM10	9.640085e-01
9276	MCM2	1
9277	MCM3	9.250140e-01
9278	MCM3AP	8.792861e-01
9279	MCM4	3.015386e-01
9280	MCM5	8.851230e-02
9281	MCM6	6.654374e-01
9282	MCM7	5.649702e-01
9283	MCM8	3.554040e-01
9284	MCM9	6.687213e-02
9285	MCOLN1	1
9286	MCOLN2	4.277270e-01
9287	MCOLN3	3.315565e-02
9288	MCPH1	5.091016e-01
9289	MCRS1	8.443586e-01
9290	MCTP1	5.220931e-01
9291	MCTP2	9.796515e-01
9292	MCTS1	4.780756e-01
9293	MDC1	1
9294	MDFI	1
9295	MDFIC	1
9296	MDGA1	1
9297	MDGA2	3.881371e-01
9298	MDH1	6.196171e-01
9299	MDH1B	2.764582e-01
9300	MDH2	5.867805e-01
9301	MDK	3.055594e-01
9302	MDM1	5.946324e-01
9303	MDM2	4.867578e-01
9304	MDM4	1
9305	MDN1	9.999988e-01
9306	MDP1	5.361952e-01
9307	ME1	6.856223e-01
9308	ME2	4.754148e-01
9309	ME3	7.103974e-01
9310	MEA1	3.561812e-01
9311	MEAF6	4.475840e-01
9312	MECOM	9.826220e-01
9313	MECP2	5.958699e-01
9314	MECR	1
9315	MED1	1
9316	MED10	1
9317	MED11	1
9318	MED12	7.019473e-01
Done

Running MutSig 2:
Scatter job 103: processing genes 9229 - 9318
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
MDN1
Processing conservation and coverage...
58% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.182125e-02	ci left: 4.577814e-01	ci right 4.774375e-01	k: 4676	n:10000
Cons ci ratio: 8.265884e-02	ci left: 1.759564e-01	ci right 1.912283e-01	k: 1835	n:10000
KS ci ratio: 4.658079e-02	ci left: 4.048206e-01	ci right 4.242292e-01	k: 4145	n:10000
MDN1   10000 perm   4 sec   (2521 perm/sec)   p_kst 4.145000e-01   p_cons 1.835000e-01   p_joint 4.676000e-01

Outputting figure to mutsig2_images.part000000000103/MDN1.30_17199_10000_0.4145_0.1835_0.4676.png
                gene_name: MDN1
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 2 percent done.
MDGA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.131817e-01	ci left: 1.010066e-01	ci right 1.132234e-01	k: 1070	n:10000
Cons ci ratio: 2.774561e-02	ci left: 6.568600e-01	ci right 6.754431e-01	k: 6662	n:10000
KS ci ratio: 1.609381e-01	ci left: 5.147727e-02	ci right 6.058353e-02	k: 559	n:10000
MDGA2   10000 perm   2 sec   (4931 perm/sec)   p_kst 5.590000e-02   p_cons 6.662000e-01   p_joint 1.070000e-01

Joint ci ratio: 8.413924e-02	ci left: 9.376599e-02	ci right 1.020513e-01	k: 1957	n:20000
Cons ci ratio: 2.132567e-02	ci left: 6.214087e-01	ci right 6.348540e-01	k: 12563	n:20000
KS ci ratio: 1.148937e-01	ci left: 5.183164e-02	ci right 5.819850e-02	k: 1099	n:20000
MDGA2   20000 perm   5 sec   (4424 perm/sec)   p_kst 5.495000e-02   p_cons 6.281500e-01   p_joint 9.785000e-02

Joint ci ratio: 6.940939e-02	ci left: 9.275464e-02	ci right 9.945715e-02	k: 2882	n:30000
Cons ci ratio: 1.736109e-02	ci left: 6.240396e-01	ci right 6.350020e-01	k: 18886	n:30000
KS ci ratio: 9.396171e-02	ci left: 5.225117e-02	ci right 5.743546e-02	k: 1644	n:30000
MDGA2   30000 perm   7 sec   (4315 perm/sec)   p_kst 5.480000e-02   p_cons 6.295333e-01   p_joint 9.606667e-02

Outputting figure to mutsig2_images.part000000000103/MDGA2.17_2939_30000_0.0548_0.62953_0.096067.png
                gene_name: MDGA2
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.055 
        ci_ks_bounds_left: 0.052 
       ci_ks_bounds_right: 0.057 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.096 
     ci_joint_bounds_left: 0.093 
    ci_joint_bounds_right: 0.099 

Current progress: 4 percent done.
MCF2L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.313783e-02	ci left: 4.424102e-01	ci right 4.620177e-01	k: 4522	n:10000
Cons ci ratio: 2.952506e-02	ci left: 6.284917e-01	ci right 6.474279e-01	k: 6380	n:10000
KS ci ratio: 5.331531e-02	ci left: 3.414412e-01	ci right 3.602457e-01	k: 3508	n:10000
MCF2L2   10000 perm   2 sec   (4737 perm/sec)   p_kst 3.508000e-01   p_cons 6.380000e-01   p_joint 4.522000e-01

Outputting figure to mutsig2_images.part000000000103/MCF2L2.14_3465_10000_0.3508_0.638_0.4522.png
                gene_name: MCF2L2
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 6 percent done.
MBD5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.316938e-02	ci left: 5.729622e-01	ci right 5.923896e-01	k: 5827	n:10000
Cons ci ratio: 2.823355e-02	ci left: 6.490099e-01	ci right 6.676978e-01	k: 6584	n:10000
KS ci ratio: 4.763285e-02	ci left: 3.940629e-01	ci right 4.133932e-01	k: 4037	n:10000
MBD5   10000 perm   2 sec   (4562 perm/sec)   p_kst 4.037000e-01   p_cons 6.584000e-01   p_joint 5.827000e-01

Outputting figure to mutsig2_images.part000000000103/MBD5.11_4525_10000_0.4037_0.6584_0.5827.png
                gene_name: MBD5
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 8 percent done.
MCF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.771470e-02	ci left: 2.424265e-01	ci right 2.595188e-01	k: 2509	n:10000
Cons ci ratio: 7.250119e-02	ci left: 2.179321e-01	ci right 2.344277e-01	k: 2261	n:10000
KS ci ratio: 5.033869e-02	ci left: 3.678862e-01	ci right 3.869853e-01	k: 3774	n:10000
MCF2   10000 perm   2 sec   (5230 perm/sec)   p_kst 3.774000e-01   p_cons 2.261000e-01   p_joint 2.509000e-01

Outputting figure to mutsig2_images.part000000000103/MCF2.11_3201_10000_0.3774_0.2261_0.2509.png
                gene_name: MCF2
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 10 percent done.
MECOM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.296142e-02	ci left: 8.954920e-01	ci right 9.072730e-01	k: 9015	n:10000
Cons ci ratio: 1.267511e-02	ci left: 8.994953e-01	ci right 9.110674e-01	k: 9054	n:10000
KS ci ratio: 3.089463e-02	ci left: 6.071884e-01	ci right 6.263435e-01	k: 6168	n:10000
MECOM   10000 perm   2 sec   (5142 perm/sec)   p_kst 6.168000e-01   p_cons 9.054000e-01   p_joint 9.015000e-01

Outputting figure to mutsig2_images.part000000000103/MECOM.9_3798_10000_0.6168_0.9054_0.9015.png
                gene_name: MECOM
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 12 percent done.
MCOLN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.034263e-01	ci left: 1.190667e-01	ci right 1.321523e-01	k: 1255	n:10000
Cons ci ratio: 1.078422e-01	ci left: 1.103719e-01	ci right 1.230523e-01	k: 1166	n:10000
KS ci ratio: 7.779080e-02	ci left: 1.945626e-01	ci right 2.104111e-01	k: 2024	n:10000
MCOLN3   10000 perm   1 sec   (6794 perm/sec)   p_kst 2.024000e-01   p_cons 1.166000e-01   p_joint 1.255000e-01

Joint ci ratio: 7.226545e-02	ci left: 1.235960e-01	ci right 1.329123e-01	k: 2564	n:20000
Cons ci ratio: 7.696846e-02	ci left: 1.103641e-01	ci right 1.192483e-01	k: 2295	n:20000
KS ci ratio: 5.487120e-02	ci left: 1.976913e-01	ci right 2.088951e-01	k: 4065	n:20000
MCOLN3   20000 perm   3 sec   (6044 perm/sec)   p_kst 2.032500e-01   p_cons 1.147500e-01   p_joint 1.282000e-01

Outputting figure to mutsig2_images.part000000000103/MCOLN3.8_1710_20000_0.20325_0.11475_0.1282.png
                gene_name: MCOLN3
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 15 percent done.
MCHR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.508864e-02	ci left: 8.642720e-01	ci right 8.775111e-01	k: 8710	n:10000
KS ci ratio: 8.990802e-03	ci left: 9.456495e-01	ci right 9.542860e-01	k: 9501	n:10000
MCHR2   10000 perm   2 sec   (6235 perm/sec)   p_kst 9.501000e-01   p_cons 8.710000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000103/MCHR2.6_1043_10000_0.9501_0.871_1.png
                gene_name: MCHR2
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 17 percent done.
MCM3AP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.783297e-02	ci left: 6.554508e-01	ci right 6.740531e-01	k: 6648	n:10000
Cons ci ratio: 1.089155e-02	ci left: 9.231709e-01	ci right 9.333780e-01	k: 9284	n:10000
KS ci ratio: 3.953258e-02	ci left: 4.858530e-01	ci right 5.055495e-01	k: 4957	n:10000
MCM3AP   10000 perm   2 sec   (4810 perm/sec)   p_kst 4.957000e-01   p_cons 9.284000e-01   p_joint 6.648000e-01

Outputting figure to mutsig2_images.part000000000103/MCM3AP.6_6055_10000_0.4957_0.9284_0.6648.png
                gene_name: MCM3AP
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.67 

Current progress: 19 percent done.
MCM5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.369573e-02	ci left: 2.658691e-01	ci right 2.834624e-01	k: 2746	n:10000
Cons ci ratio: 5.604552e-02	ci left: 3.191965e-01	ci right 3.377036e-01	k: 3284	n:10000
KS ci ratio: 1.267434e-01	ci left: 8.174120e-02	ci right 9.290058e-02	k: 872	n:10000
MCM5   10000 perm   2 sec   (5895 perm/sec)   p_kst 8.720000e-02   p_cons 3.284000e-01   p_joint 2.746000e-01

Joint ci ratio: 6.190544e-02	ci left: 1.618052e-01	ci right 1.721918e-01	k: 3339	n:20000
Cons ci ratio: 3.916768e-02	ci left: 3.271148e-01	ci right 3.402336e-01	k: 6673	n:20000
KS ci ratio: 8.959483e-02	ci left: 8.342314e-02	ci right 9.129730e-02	k: 1746	n:20000
MCM5   20000 perm   4 sec   (5324 perm/sec)   p_kst 8.730000e-02   p_cons 3.336500e-01   p_joint 1.669500e-01

Outputting figure to mutsig2_images.part000000000103/MCM5.6_2269_20000_0.0873_0.33365_0.16695.png
                gene_name: MCM5
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.087 
        ci_ks_bounds_left: 0.083 
       ci_ks_bounds_right: 0.091 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 21 percent done.
MED1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.230716e-01	ci left: 8.640461e-02	ci right 9.783428e-02	k: 920	n:10000
Cons ci ratio: 4.458556e-02	ci left: 4.261509e-01	ci right 4.456865e-01	k: 4359	n:10000
KS ci ratio: 1.680497e-01	ci left: 4.724933e-02	ci right 5.601420e-02	k: 515	n:10000
MED1   10000 perm   2 sec   (5418 perm/sec)   p_kst 5.150000e-02   p_cons 4.359000e-01   p_joint 9.200000e-02

Joint ci ratio: 9.425271e-02	ci left: 7.583612e-02	ci right 8.338663e-02	k: 1591	n:20000
Cons ci ratio: 3.148789e-02	ci left: 4.296611e-01	ci right 4.434573e-01	k: 8731	n:20000
KS ci ratio: 1.214604e-01	ci left: 4.648596e-02	ci right 5.254587e-02	k: 989	n:20000
MED1   20000 perm   4 sec   (4866 perm/sec)   p_kst 4.945000e-02   p_cons 4.365500e-01   p_joint 7.955000e-02

Joint ci ratio: 8.039167e-02	ci left: 7.047366e-02	ci right 7.640926e-02	k: 2202	n:30000
Cons ci ratio: 2.467680e-02	ci left: 4.511843e-01	ci right 4.624908e-01	k: 13705	n:30000
KS ci ratio: 9.896261e-02	ci left: 4.723528e-02	ci right 5.218573e-02	k: 1490	n:30000
MED1   30000 perm   7 sec   (4613 perm/sec)   p_kst 4.966667e-02   p_cons 4.568333e-01   p_joint 7.340000e-02

Outputting figure to mutsig2_images.part000000000103/MED1.6_4814_30000_0.049667_0.45683_0.0734.png
                gene_name: MED1
               theta_stop: 0.099 
                    nperm: 30000 
                     p_ks: 0.050 
        ci_ks_bounds_left: 0.047 
       ci_ks_bounds_right: 0.052 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.073 
     ci_joint_bounds_left: 0.070 
    ci_joint_bounds_right: 0.076 

Current progress: 23 percent done.
MED12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.263474e-01	ci left: 8.222674e-02	ci right 9.341473e-02	k: 877	n:10000
Cons ci ratio: 5.513094e-02	ci left: 3.264433e-01	ci right 3.450525e-01	k: 3357	n:10000
KS ci ratio: 1.827128e-01	ci left: 3.996794e-02	ci right 4.810038e-02	k: 439	n:10000
MED12   10000 perm   2 sec   (4489 perm/sec)   p_kst 4.390000e-02   p_cons 3.357000e-01   p_joint 8.770000e-02

Joint ci ratio: 9.844654e-02	ci left: 6.982288e-02	ci right 7.710171e-02	k: 1468	n:20000
Cons ci ratio: 3.692217e-02	ci left: 3.537417e-01	ci right 3.670989e-01	k: 7208	n:20000
KS ci ratio: 1.279880e-01	ci left: 4.192594e-02	ci right 4.770733e-02	k: 895	n:20000
MED12   20000 perm   5 sec   (4094 perm/sec)   p_kst 4.475000e-02   p_cons 3.604000e-01   p_joint 7.340000e-02

Joint ci ratio: 8.000043e-02	ci left: 7.112796e-02	ci right 7.708817e-02	k: 2222	n:30000
Cons ci ratio: 3.012392e-02	ci left: 3.553296e-01	ci right 3.662307e-01	k: 10823	n:30000
KS ci ratio: 1.036576e-01	ci left: 4.313673e-02	ci right 4.788512e-02	k: 1364	n:30000
MED12   30000 perm   8 sec   (3924 perm/sec)   p_kst 4.546667e-02   p_cons 3.607667e-01   p_joint 7.406667e-02

Joint ci ratio: 6.128149e-02	ci left: 8.994904e-02	ci right 9.566023e-02	k: 3711	n:40000
Cons ci ratio: 2.734752e-02	ci left: 3.346843e-01	ci right 3.439891e-01	k: 13573	n:40000
KS ci ratio: 9.021275e-02	ci left: 4.303797e-02	ci right 4.712840e-02	k: 1802	n:40000
MED12   40000 perm   10 sec   (3836 perm/sec)   p_kst 4.505000e-02   p_cons 3.393250e-01   p_joint 9.277500e-02

Outputting figure to mutsig2_images.part000000000103/MED12.6_6714_40000_0.04505_0.33932_0.092775.png
                gene_name: MED12
               theta_stop: 0.090 
                    nperm: 40000 
                     p_ks: 0.045 
        ci_ks_bounds_left: 0.043 
       ci_ks_bounds_right: 0.047 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.093 
     ci_joint_bounds_left: 0.090 
    ci_joint_bounds_right: 0.096 

Current progress: 25 percent done.
MCCC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.318688e-02	ci left: 7.320922e-01	ci right 7.493674e-01	k: 7408	n:10000
Cons ci ratio: 2.287912e-02	ci left: 7.372464e-01	ci right 7.544102e-01	k: 7459	n:10000
KS ci ratio: 2.726672e-02	ci left: 6.646124e-01	ci right 6.830863e-01	k: 6739	n:10000
MCCC1   10000 perm   2 sec   (5575 perm/sec)   p_kst 6.739000e-01   p_cons 7.459000e-01   p_joint 7.408000e-01

Outputting figure to mutsig2_images.part000000000103/MCCC1.5_2254_10000_0.6739_0.7459_0.7408.png
                gene_name: MCCC1
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 27 percent done.
MCM4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.901577e-02	ci left: 6.365358e-01	ci right 6.553791e-01	k: 6460	n:10000
Cons ci ratio: 5.660918e-02	ci left: 3.148297e-01	ci right 3.332729e-01	k: 3240	n:10000
KS ci ratio: 2.632864e-02	ci left: 6.799240e-01	ci right 6.981658e-01	k: 6891	n:10000
MCM4   10000 perm   2 sec   (5618 perm/sec)   p_kst 6.891000e-01   p_cons 3.240000e-01   p_joint 6.460000e-01

Outputting figure to mutsig2_images.part000000000103/MCM4.5_2656_10000_0.6891_0.324_0.646.png
                gene_name: MCM4
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 29 percent done.
MDC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.769094e-01	ci left: 8.686342e-03	ci right 1.280614e-02	k: 106	n:10000
Cons ci ratio: 1.828014e-02	ci left: 8.137498e-01	ci right 8.288626e-01	k: 8214	n:10000
KS ci ratio: 8.984102e-01	ci left: 1.067132e-03	ci right 2.843290e-03	k: 18	n:10000
MDC1   10000 perm   2 sec   (5103 perm/sec)   p_kst 1.800000e-03   p_cons 8.214000e-01   p_joint 1.060000e-02

Joint ci ratio: 1.831122e-01	ci left: 2.034603e-02	ci right 2.449443e-02	k: 447	n:20000
Cons ci ratio: 1.311018e-02	ci left: 8.117725e-01	ci right 8.225352e-01	k: 16344	n:20000
KS ci ratio: 5.971366e-01	ci left: 1.513902e-03	ci right 2.837541e-03	k: 42	n:20000
MDC1   20000 perm   4 sec   (4666 perm/sec)   p_kst 2.100000e-03   p_cons 8.172000e-01   p_joint 2.235000e-02

Joint ci ratio: 1.906213e-01	ci left: 1.257399e-02	ci right 1.525470e-02	k: 416	n:30000
Cons ci ratio: 1.123718e-02	ci left: 7.976802e-01	ci right 8.067279e-01	k: 24067	n:30000
KS ci ratio: 4.713617e-01	ci left: 1.760572e-03	ci right 2.872668e-03	k: 68	n:30000
MDC1   30000 perm   7 sec   (4471 perm/sec)   p_kst 2.266667e-03   p_cons 8.022333e-01   p_joint 1.386667e-02

Joint ci ratio: 1.418846e-01	ci left: 1.739501e-02	ci right 2.007550e-02	k: 748	n:40000
Cons ci ratio: 9.724243e-03	ci left: 7.985390e-01	ci right 8.063671e-01	k: 32099	n:40000
KS ci ratio: 3.954895e-01	ci left: 1.966938e-03	ci right 2.957505e-03	k: 97	n:40000
MDC1   40000 perm   9 sec   (4361 perm/sec)   p_kst 2.425000e-03   p_cons 8.024750e-01   p_joint 1.870000e-02

Joint ci ratio: 1.340295e-01	ci left: 1.569160e-02	ci right 1.796500e-02	k: 840	n:50000
Cons ci ratio: 8.727090e-03	ci left: 7.978757e-01	ci right 8.048893e-01	k: 40070	n:50000
KS ci ratio: 3.574122e-01	ci left: 1.972016e-03	ci right 2.847358e-03	k: 119	n:50000
MDC1   50000 perm   12 sec   (4272 perm/sec)   p_kst 2.380000e-03   p_cons 8.014000e-01   p_joint 1.680000e-02

Joint ci ratio: 1.285269e-01	ci left: 1.428461e-02	ci right 1.626268e-02	k: 915	n:60000
Cons ci ratio: 7.959187e-03	ci left: 7.984867e-01	ci right 8.048840e-01	k: 48102	n:60000
KS ci ratio: 3.285669e-01	ci left: 1.978482e-03	ci right 2.770881e-03	k: 141	n:60000
MDC1   60000 perm   14 sec   (4191 perm/sec)   p_kst 2.350000e-03   p_cons 8.017000e-01   p_joint 1.525000e-02

Joint ci ratio: 1.155114e-01	ci left: 1.524998e-02	ci right 1.713329e-02	k: 1132	n:70000
Cons ci ratio: 7.010543e-03	ci left: 8.141872e-01	ci right 8.199294e-01	k: 57195	n:70000
KS ci ratio: 3.038879e-01	ci left: 2.011533e-03	ci right 2.744978e-03	k: 165	n:70000
MDC1   70000 perm   17 sec   (4116 perm/sec)   p_kst 2.357143e-03   p_cons 8.170714e-01   p_joint 1.617143e-02

Joint ci ratio: 1.126900e-01	ci left: 1.405969e-02	ci right 1.575075e-02	k: 1191	n:80000
Cons ci ratio: 6.554935e-03	ci left: 8.145040e-01	ci right 8.198730e-01	k: 65376	n:80000
KS ci ratio: 2.847993e-01	ci left: 2.026386e-03	ci right 2.710502e-03	k: 188	n:80000
MDC1   80000 perm   20 sec   (4042 perm/sec)   p_kst 2.350000e-03   p_cons 8.172000e-01   p_joint 1.488750e-02

Joint ci ratio: 1.175756e-01	ci left: 1.148221e-02	ci right 1.292726e-02	k: 1097	n:90000
Cons ci ratio: 6.183723e-03	ci left: 8.144804e-01	ci right 8.195436e-01	k: 73532	n:90000
KS ci ratio: 2.708356e-01	ci left: 2.007980e-03	ci right 2.646997e-03	k: 208	n:90000
MDC1   90000 perm   23 sec   (3985 perm/sec)   p_kst 2.311111e-03   p_cons 8.170222e-01   p_joint 1.218889e-02

Joint ci ratio: 1.166321e-01	ci left: 1.051812e-02	ci right 1.183047e-02	k: 1116	n:100000
Cons ci ratio: 5.873104e-03	ci left: 8.142677e-01	ci right 8.190740e-01	k: 81668	n:100000
KS ci ratio: 2.587428e-01	ci left: 1.993910e-03	ci right 2.595541e-03	k: 228	n:100000
MDC1   100000 perm   25 sec   (3927 perm/sec)   p_kst 2.280000e-03   p_cons 8.166800e-01   p_joint 1.116000e-02

Joint ci ratio: 1.151400e-01	ci left: 9.826541e-03	ci right 1.103584e-02	k: 1146	n:110000
Cons ci ratio: 5.594647e-03	ci left: 8.146564e-01	ci right 8.192359e-01	k: 89865	n:110000
KS ci ratio: 2.486384e-01	ci left: 1.974391e-03	ci right 2.543271e-03	k: 247	n:110000
MDC1   110000 perm   28 sec   (3872 perm/sec)   p_kst 2.245455e-03   p_cons 8.169545e-01   p_joint 1.041818e-02

Joint ci ratio: 1.119819e-01	ci left: 9.541961e-03	ci right 1.068190e-02	k: 1212	n:120000
Cons ci ratio: 5.353411e-03	ci left: 8.149260e-01	ci right 8.193086e-01	k: 98055	n:120000
KS ci ratio: 2.335727e-01	ci left: 2.068272e-03	ci right 2.622883e-03	k: 280	n:120000
MDC1   120000 perm   31 sec   (3819 perm/sec)   p_kst 2.333333e-03   p_cons 8.171250e-01   p_joint 1.010000e-02

Joint ci ratio: 1.117472e-01	ci left: 8.852649e-03	ci right 9.907871e-03	k: 1218	n:130000
Cons ci ratio: 5.133756e-03	ci left: 8.155748e-01	ci right 8.197802e-01	k: 106299	n:130000
KS ci ratio: 2.253076e-01	ci left: 2.061429e-03	ci right 2.591930e-03	k: 301	n:130000
MDC1   130000 perm   35 sec   (3767 perm/sec)   p_kst 2.315385e-03   p_cons 8.176846e-01   p_joint 9.369231e-03

Joint ci ratio: 9.713147e-02	ci left: 1.094109e-02	ci right 1.206499e-02	k: 1609	n:140000
Cons ci ratio: 4.946517e-03	ci left: 8.156818e-01	ci right 8.197336e-01	k: 114480	n:140000
KS ci ratio: 2.188833e-01	ci left: 2.035601e-03	ci right 2.542508e-03	k: 319	n:140000
MDC1   140000 perm   38 sec   (3706 perm/sec)   p_kst 2.278571e-03   p_cons 8.177143e-01   p_joint 1.149286e-02

Joint ci ratio: 9.623691e-02	ci left: 1.041322e-02	ci right 1.147248e-02	k: 1640	n:150000
Cons ci ratio: 4.774422e-03	ci left: 8.160245e-01	ci right 8.199365e-01	k: 122698	n:150000
KS ci ratio: 2.086907e-01	ci left: 2.101818e-03	ci right 2.597731e-03	k: 351	n:150000
MDC1   150000 perm   41 sec   (3657 perm/sec)   p_kst 2.340000e-03   p_cons 8.179867e-01   p_joint 1.093333e-02

Joint ci ratio: 9.476464e-02	ci left: 1.007955e-02	ci right 1.108830e-02	k: 1692	n:160000
Cons ci ratio: 4.616977e-03	ci left: 8.164645e-01	ci right 8.202490e-01	k: 130938	n:160000
KS ci ratio: 2.035547e-01	ci left: 2.077146e-03	ci right 2.553675e-03	k: 369	n:160000
MDC1   160000 perm   44 sec   (3610 perm/sec)   p_kst 2.306250e-03   p_cons 8.183625e-01   p_joint 1.057500e-02

Joint ci ratio: 9.456904e-02	ci left: 9.532451e-03	ci right 1.048437e-02	k: 1700	n:170000
Cons ci ratio: 4.481573e-03	ci left: 8.163583e-01	ci right 8.200309e-01	k: 139094	n:170000
KS ci ratio: 1.995548e-01	ci left: 2.038739e-03	ci right 2.496147e-03	k: 384	n:170000
MDC1   170000 perm   48 sec   (3554 perm/sec)   p_kst 2.258824e-03   p_cons 8.182000e-01   p_joint 1.000000e-02

Joint ci ratio: 9.319528e-02	ci left: 9.279494e-03	ci right 1.019196e-02	k: 1751	n:180000
Cons ci ratio: 4.357501e-03	ci left: 8.162598e-01	ci right 8.198299e-01	k: 147249	n:180000
KS ci ratio: 1.933739e-01	ci left: 2.057536e-03	ci right 2.503181e-03	k: 409	n:180000
MDC1   180000 perm   51 sec   (3504 perm/sec)   p_kst 2.272222e-03   p_cons 8.180500e-01   p_joint 9.727778e-03

Joint ci ratio: 9.101662e-02	ci left: 9.228152e-03	ci right 1.011322e-02	k: 1836	n:190000
Cons ci ratio: 4.243341e-03	ci left: 8.161625e-01	ci right 8.196383e-01	k: 155402	n:190000
KS ci ratio: 1.886050e-01	ci left: 2.054486e-03	ci right 2.487240e-03	k: 430	n:190000
MDC1   190000 perm   55 sec   (3458 perm/sec)   p_kst 2.263158e-03   p_cons 8.179053e-01   p_joint 9.663158e-03

Joint ci ratio: 9.205578e-02	ci left: 8.571189e-03	ci right 9.403136e-03	k: 1796	n:200000
Cons ci ratio: 4.135414e-03	ci left: 8.162417e-01	ci right 8.196291e-01	k: 163588	n:200000
KS ci ratio: 1.847880e-01	ci left: 2.037554e-03	ci right 2.457082e-03	k: 448	n:200000
MDC1   200000 perm   59 sec   (3417 perm/sec)   p_kst 2.240000e-03   p_cons 8.179400e-01   p_joint 8.980000e-03

Joint ci ratio: 9.031788e-02	ci left: 8.488752e-03	ci right 9.296320e-03	k: 1866	n:210000
Cons ci ratio: 4.040615e-03	ci left: 8.159225e-01	ci right 8.192307e-01	k: 171692	n:210000
KS ci ratio: 1.815838e-01	ci left: 2.013222e-03	ci right 2.419761e-03	k: 464	n:210000
MDC1   210000 perm   62 sec   (3378 perm/sec)   p_kst 2.209524e-03   p_cons 8.175810e-01   p_joint 8.885714e-03

Joint ci ratio: 8.842179e-02	ci left: 8.462847e-03	ci right 9.250175e-03	k: 1947	n:220000
Cons ci ratio: 3.947582e-03	ci left: 8.159707e-01	ci right 8.192027e-01	k: 179870	n:220000
KS ci ratio: 1.774350e-01	ci left: 2.017219e-03	ci right 2.414260e-03	k: 486	n:220000
MDC1   220000 perm   66 sec   (3338 perm/sec)   p_kst 2.209091e-03   p_cons 8.175909e-01   p_joint 8.850000e-03

Joint ci ratio: 8.214334e-02	ci left: 9.401427e-03	ci right 1.021100e-02	k: 2254	n:230000
Cons ci ratio: 3.858892e-03	ci left: 8.161552e-01	ci right 8.193150e-01	k: 188080	n:230000
KS ci ratio: 1.733876e-01	ci left: 2.025125e-03	ci right 2.413678e-03	k: 509	n:230000
MDC1   230000 perm   70 sec   (3301 perm/sec)   p_kst 2.213043e-03   p_cons 8.177391e-01   p_joint 9.800000e-03

Joint ci ratio: 8.134488e-02	ci left: 9.193327e-03	ci right 9.976918e-03	k: 2299	n:240000
Cons ci ratio: 3.778456e-03	ci left: 8.161243e-01	ci right 8.192180e-01	k: 196242	n:240000
KS ci ratio: 1.702465e-01	ci left: 2.016506e-03	ci right 2.395677e-03	k: 528	n:240000
MDC1   240000 perm   74 sec   (3264 perm/sec)   p_kst 2.200000e-03   p_cons 8.176750e-01   p_joint 9.579167e-03

Joint ci ratio: 7.561433e-02	ci left: 1.023365e-02	ci right 1.104176e-02	k: 2658	n:250000
Cons ci ratio: 3.703990e-03	ci left: 8.160043e-01	ci right 8.190363e-01	k: 204381	n:250000
KS ci ratio: 1.672701e-01	ci left: 2.008635e-03	ci right 2.379057e-03	k: 547	n:250000
MDC1   250000 perm   77 sec   (3227 perm/sec)   p_kst 2.188000e-03   p_cons 8.175240e-01   p_joint 1.063200e-02

Joint ci ratio: 7.664104e-02	ci left: 9.579587e-03	ci right 1.034678e-02	k: 2589	n:260000
Cons ci ratio: 3.631510e-03	ci left: 8.160793e-01	ci right 8.190521e-01	k: 212568	n:260000
KS ci ratio: 1.642995e-01	ci left: 2.005111e-03	ci right 2.367667e-03	k: 567	n:260000
MDC1   260000 perm   81 sec   (3192 perm/sec)   p_kst 2.180769e-03   p_cons 8.175692e-01   p_joint 9.957692e-03

Joint ci ratio: 7.626973e-02	ci left: 9.319195e-03	ci right 1.006176e-02	k: 2615	n:270000
Cons ci ratio: 3.565868e-03	ci left: 8.159189e-01	ci right 8.188372e-01	k: 220693	n:270000
KS ci ratio: 1.607979e-01	ci left: 2.019675e-03	ci right 2.376330e-03	k: 592	n:270000
MDC1   270000 perm   85 sec   (3159 perm/sec)   p_kst 2.192593e-03   p_cons 8.173815e-01   p_joint 9.685185e-03

Joint ci ratio: 7.532965e-02	ci left: 9.217595e-03	ci right 9.942611e-03	k: 2681	n:280000
Cons ci ratio: 3.499677e-03	ci left: 8.161108e-01	ci right 8.189755e-01	k: 228913	n:280000
KS ci ratio: 1.578957e-01	ci left: 2.022983e-03	ci right 2.373163e-03	k: 614	n:280000
MDC1   280000 perm   90 sec   (3123 perm/sec)   p_kst 2.192857e-03   p_cons 8.175464e-01   p_joint 9.575000e-03

Joint ci ratio: 6.822639e-02	ci left: 1.087100e-02	ci right 1.164226e-02	k: 3263	n:290000
Cons ci ratio: 3.609723e-03	ci left: 8.011742e-01	ci right 8.040749e-01	k: 232762	n:290000
KS ci ratio: 1.550232e-01	ci left: 2.029430e-03	ci right 2.373742e-03	k: 637	n:290000
MDC1   290000 perm   94 sec   (3090 perm/sec)   p_kst 2.196552e-03   p_cons 8.026276e-01   p_joint 1.125172e-02

Joint ci ratio: 6.426584e-02	ci left: 1.185615e-02	ci right 1.264665e-02	k: 3674	n:300000
Cons ci ratio: 3.551189e-03	ci left: 8.010073e-01	ci right 8.038602e-01	k: 240731	n:300000
KS ci ratio: 1.525335e-01	ci left: 2.029089e-03	ci right 2.367309e-03	k: 658	n:300000
MDC1   300000 perm   98 sec   (3056 perm/sec)   p_kst 2.193333e-03   p_cons 8.024367e-01   p_joint 1.224667e-02

Joint ci ratio: 6.463562e-02	ci left: 1.134664e-02	ci right 1.210769e-02	k: 3634	n:310000
Cons ci ratio: 3.493455e-03	ci left: 8.010294e-01	ci right 8.038359e-01	k: 248755	n:310000
KS ci ratio: 1.499391e-01	ci left: 2.035021e-03	ci right 2.367943e-03	k: 681	n:310000
MDC1   310000 perm   103 sec   (3022 perm/sec)   p_kst 2.196774e-03   p_cons 8.024355e-01   p_joint 1.172258e-02

Joint ci ratio: 6.041002e-02	ci left: 1.259499e-02	ci right 1.338261e-02	k: 4155	n:320000
Cons ci ratio: 3.438517e-03	ci left: 8.010443e-01	ci right 8.038065e-01	k: 256777	n:320000
KS ci ratio: 1.467445e-01	ci left: 2.061699e-03	ci right 2.391169e-03	k: 711	n:320000
MDC1   320000 perm   107 sec   (2990 perm/sec)   p_kst 2.221875e-03   p_cons 8.024281e-01   p_joint 1.298437e-02

Joint ci ratio: 5.998505e-02	ci left: 1.239237e-02	ci right 1.316168e-02	k: 4215	n:330000
Cons ci ratio: 3.385670e-03	ci left: 8.010980e-01	ci right 8.038179e-01	k: 264812	n:330000
KS ci ratio: 1.456264e-01	ci left: 2.031335e-03	ci right 2.353264e-03	k: 722	n:330000
MDC1   330000 perm   111 sec   (2960 perm/sec)   p_kst 2.187879e-03   p_cons 8.024606e-01   p_joint 1.277273e-02

Joint ci ratio: 6.192897e-02	ci left: 1.128622e-02	ci right 1.201037e-02	k: 3959	n:340000
Cons ci ratio: 3.334878e-03	ci left: 8.011784e-01	ci right 8.038576e-01	k: 272857	n:340000
KS ci ratio: 1.438476e-01	ci left: 2.022613e-03	ci right 2.338908e-03	k: 740	n:340000
MDC1   340000 perm   116 sec   (2930 perm/sec)   p_kst 2.176471e-03   p_cons 8.025206e-01   p_joint 1.164412e-02

Joint ci ratio: 6.101871e-02	ci left: 1.129853e-02	ci right 1.201245e-02	k: 4078	n:350000
Cons ci ratio: 3.286394e-03	ci left: 8.012459e-01	ci right 8.038862e-01	k: 280899	n:350000
KS ci ratio: 1.417586e-01	ci left: 2.025436e-03	ci right 2.337184e-03	k: 762	n:350000
MDC1   350000 perm   121 sec   (2900 perm/sec)   p_kst 2.177143e-03   p_cons 8.025686e-01   p_joint 1.165143e-02

Joint ci ratio: 6.010400e-02	ci left: 1.132665e-02	ci right 1.203124e-02	k: 4203	n:360000
Cons ci ratio: 3.241129e-03	ci left: 8.011957e-01	ci right 8.037994e-01	k: 288900	n:360000
KS ci ratio: 1.394911e-01	ci left: 2.036176e-03	ci right 2.344147e-03	k: 787	n:360000
MDC1   360000 perm   125 sec   (2872 perm/sec)   p_kst 2.186111e-03   p_cons 8.025000e-01   p_joint 1.167500e-02

Joint ci ratio: 5.807286e-02	ci left: 1.181146e-02	ci right 1.252054e-02	k: 4500	n:370000
Cons ci ratio: 3.197330e-03	ci left: 8.011837e-01	ci right 8.037521e-01	k: 296914	n:370000
KS ci ratio: 1.373291e-01	ci left: 2.046373e-03	ci right 2.350697e-03	k: 812	n:370000
MDC1   370000 perm   130 sec   (2842 perm/sec)   p_kst 2.194595e-03   p_cons 8.024703e-01   p_joint 1.216216e-02

Joint ci ratio: 5.734541e-02	ci left: 1.179889e-02	ci right 1.249805e-02	k: 4615	n:380000
Cons ci ratio: 3.153583e-03	ci left: 8.013414e-01	ci right 8.038751e-01	k: 304992	n:380000
KS ci ratio: 1.358343e-01	ci left: 2.038270e-03	ci right 2.337823e-03	k: 830	n:380000
MDC1   380000 perm   135 sec   (2809 perm/sec)   p_kst 2.184211e-03   p_cons 8.026105e-01   p_joint 1.214474e-02

Joint ci ratio: 5.695005e-02	ci left: 1.166062e-02	ci right 1.234666e-02	k: 4680	n:390000
Cons ci ratio: 3.111961e-03	ci left: 8.014526e-01	ci right 8.039531e-01	k: 313055	n:390000
KS ci ratio: 1.342290e-01	ci left: 2.035556e-03	ci right 2.330893e-03	k: 850	n:390000
MDC1   390000 perm   140 sec   (2779 perm/sec)   p_kst 2.179487e-03   p_cons 8.027051e-01   p_joint 1.200000e-02

Joint ci ratio: 5.784674e-02	ci left: 1.102155e-02	ci right 1.168055e-02	k: 4539	n:400000
Cons ci ratio: 3.072719e-03	ci left: 8.014783e-01	ci right 8.039473e-01	k: 321086	n:400000
KS ci ratio: 1.319976e-01	ci left: 2.054754e-03	ci right 2.347532e-03	k: 879	n:400000
MDC1   400000 perm   146 sec   (2748 perm/sec)   p_kst 2.197500e-03   p_cons 8.027150e-01   p_joint 1.134750e-02

Joint ci ratio: 5.720848e-02	ci left: 1.099793e-02	ci right 1.164802e-02	k: 4641	n:410000
Cons ci ratio: 3.034668e-03	ci left: 8.015298e-01	ci right 8.039683e-01	k: 329128	n:410000
KS ci ratio: 1.306686e-01	ci left: 2.047098e-03	ci right 2.335619e-03	k: 897	n:410000
MDC1   410000 perm   151 sec   (2719 perm/sec)   p_kst 2.187805e-03   p_cons 8.027512e-01   p_joint 1.131951e-02

Joint ci ratio: 5.671192e-02	ci left: 1.092852e-02	ci right 1.156872e-02	k: 4723	n:420000
Cons ci ratio: 2.999778e-03	ci left: 8.013906e-01	ci right 8.038005e-01	k: 337091	n:420000
KS ci ratio: 1.292377e-01	ci left: 2.044428e-03	ci right 2.329176e-03	k: 917	n:420000
MDC1   420000 perm   156 sec   (2692 perm/sec)   p_kst 2.183333e-03   p_cons 8.025976e-01   p_joint 1.124524e-02

Joint ci ratio: 5.416281e-02	ci left: 1.170880e-02	ci right 1.236291e-02	k: 5174	n:430000
Cons ci ratio: 2.963842e-03	ci left: 8.014957e-01	ci right 8.038770e-01	k: 345156	n:430000
KS ci ratio: 1.281268e-01	ci left: 2.032894e-03	ci right 2.313417e-03	k: 933	n:430000
MDC1   430000 perm   161 sec   (2667 perm/sec)   p_kst 2.169767e-03   p_cons 8.026884e-01   p_joint 1.203256e-02

Joint ci ratio: 5.393352e-02	ci left: 1.154356e-02	ci right 1.218562e-02	k: 5219	n:440000
Cons ci ratio: 2.929672e-03	ci left: 8.015415e-01	ci right 8.038954e-01	k: 353197	n:440000
KS ci ratio: 1.260507e-01	ci left: 2.054908e-03	ci right 2.333530e-03	k: 964	n:440000
MDC1   440000 perm   167 sec   (2642 perm/sec)   p_kst 2.190909e-03   p_cons 8.027205e-01   p_joint 1.186136e-02

Joint ci ratio: 5.424644e-02	ci left: 1.115983e-02	ci right 1.178426e-02	k: 5161	n:450000
Cons ci ratio: 2.898161e-03	ci left: 8.014206e-01	ci right 8.037488e-01	k: 361164	n:450000
KS ci ratio: 1.241973e-01	ci left: 2.071672e-03	ci right 2.348133e-03	k: 993	n:450000
MDC1   450000 perm   172 sec   (2617 perm/sec)   p_kst 2.206667e-03   p_cons 8.025867e-01   p_joint 1.146889e-02

Joint ci ratio: 5.446711e-02	ci left: 1.083140e-02	ci right 1.144000e-02	k: 5121	n:460000
Cons ci ratio: 2.866719e-03	ci left: 8.014075e-01	ci right 8.037104e-01	k: 369178	n:460000
KS ci ratio: 1.229059e-01	ci left: 2.070877e-03	ci right 2.344150e-03	k: 1014	n:460000
MDC1   460000 perm   177 sec   (2595 perm/sec)   p_kst 2.204348e-03   p_cons 8.025609e-01   p_joint 1.113261e-02

Joint ci ratio: 5.235473e-02	ci left: 1.147853e-02	ci right 1.209772e-02	k: 5539	n:470000
Cons ci ratio: 2.835594e-03	ci left: 8.014719e-01	ci right 8.037499e-01	k: 377228	n:470000
KS ci ratio: 1.215365e-01	ci left: 2.074256e-03	ci right 2.344705e-03	k: 1037	n:470000
MDC1   470000 perm   183 sec   (2572 perm/sec)   p_kst 2.206383e-03   p_cons 8.026128e-01   p_joint 1.178511e-02

Joint ci ratio: 5.256318e-02	ci left: 1.115299e-02	ci right 1.175709e-02	k: 5497	n:480000
Cons ci ratio: 2.805792e-03	ci left: 8.014962e-01	ci right 8.037502e-01	k: 385260	n:480000
KS ci ratio: 1.207261e-01	ci left: 2.059324e-03	ci right 2.325909e-03	k: 1051	n:480000
MDC1   480000 perm   188 sec   (2549 perm/sec)   p_kst 2.189583e-03   p_cons 8.026250e-01   p_joint 1.145208e-02

Joint ci ratio: 5.197042e-02	ci left: 1.117917e-02	ci right 1.177765e-02	k: 5623	n:490000
Cons ci ratio: 2.777144e-03	ci left: 8.014929e-01	ci right 8.037239e-01	k: 393279	n:490000
KS ci ratio: 1.195949e-01	ci left: 2.056886e-03	ci right 2.320484e-03	k: 1071	n:490000
MDC1   490000 perm   194 sec   (2527 perm/sec)   p_kst 2.185714e-03   p_cons 8.026102e-01   p_joint 1.147551e-02

Joint ci ratio: 5.220696e-02	ci left: 1.085881e-02	ci right 1.144287e-02	k: 5574	n:500000
Cons ci ratio: 2.748592e-03	ci left: 8.015781e-01	ci right 8.037863e-01	k: 401342	n:500000
KS ci ratio: 1.185493e-01	ci left: 2.052616e-03	ci right 2.313206e-03	k: 1090	n:500000
MDC1   500000 perm   200 sec   (2504 perm/sec)   p_kst 2.180000e-03   p_cons 8.026840e-01   p_joint 1.114800e-02

Joint ci ratio: 5.169489e-02	ci left: 1.086071e-02	ci right 1.143898e-02	k: 5685	n:510000
Cons ci ratio: 2.720296e-03	ci left: 8.017309e-01	ci right 8.039167e-01	k: 409441	n:510000
KS ci ratio: 1.174776e-01	ci left: 2.050427e-03	ci right 2.308222e-03	k: 1110	n:510000
MDC1   510000 perm   206 sec   (2482 perm/sec)   p_kst 2.176471e-03   p_cons 8.028255e-01   p_joint 1.114706e-02

Joint ci ratio: 5.132759e-02	ci left: 1.080751e-02	ci right 1.137873e-02	k: 5767	n:520000
Cons ci ratio: 2.693869e-03	ci left: 8.017583e-01	ci right 8.039229e-01	k: 417478	n:520000
KS ci ratio: 1.164345e-01	ci left: 2.048332e-03	ci right 2.303419e-03	k: 1130	n:520000
MDC1   520000 perm   211 sec   (2460 perm/sec)   p_kst 2.173077e-03   p_cons 8.028423e-01   p_joint 1.109038e-02

Joint ci ratio: 4.623885e-02	ci left: 1.306978e-02	ci right 1.369027e-02	k: 7090	n:530000
Cons ci ratio: 2.667816e-03	ci left: 8.018302e-01	ci right 8.039740e-01	k: 425539	n:530000
KS ci ratio: 1.130324e-01	ci left: 2.136143e-03	ci right 2.393875e-03	k: 1199	n:530000
MDC1   530000 perm   217 sec   (2439 perm/sec)   p_kst 2.262264e-03   p_cons 8.029038e-01   p_joint 1.337736e-02

Joint ci ratio: 4.629762e-02	ci left: 1.279842e-02	ci right 1.340682e-02	k: 7074	n:540000
Cons ci ratio: 2.643293e-03	ci left: 8.018049e-01	ci right 8.039289e-01	k: 433549	n:540000
KS ci ratio: 1.120103e-01	ci left: 2.136179e-03	ci right 2.391431e-03	k: 1221	n:540000
MDC1   540000 perm   223 sec   (2417 perm/sec)   p_kst 2.261111e-03   p_cons 8.028685e-01   p_joint 1.310000e-02

Joint ci ratio: 4.672993e-02	ci left: 1.233743e-02	ci right 1.292954e-02	k: 6947	n:550000
Cons ci ratio: 2.620171e-03	ci left: 8.016913e-01	ci right 8.037964e-01	k: 441510	n:550000
KS ci ratio: 1.106152e-01	ci left: 2.152134e-03	ci right 2.405881e-03	k: 1252	n:550000
MDC1   550000 perm   230 sec   (2396 perm/sec)   p_kst 2.276364e-03   p_cons 8.027455e-01   p_joint 1.263091e-02

Joint ci ratio: 4.981321e-02	ci left: 1.066496e-02	ci right 1.121154e-02	k: 6124	n:560000
Cons ci ratio: 2.596751e-03	ci left: 8.016910e-01	ci right 8.037773e-01	k: 449532	n:560000
KS ci ratio: 1.080547e-01	ci left: 2.217921e-03	ci right 2.472986e-03	k: 1312	n:560000
MDC1   560000 perm   236 sec   (2376 perm/sec)   p_kst 2.342857e-03   p_cons 8.027357e-01   p_joint 1.093571e-02

Joint ci ratio: 5.075616e-02	ci left: 1.009321e-02	ci right 1.062056e-02	k: 5902	n:570000
Cons ci ratio: 2.573748e-03	ci left: 8.017154e-01	ci right 8.037832e-01	k: 457568	n:570000
KS ci ratio: 1.074435e-01	ci left: 2.204615e-03	ci right 2.456626e-03	k: 1327	n:570000
MDC1   570000 perm   242 sec   (2356 perm/sec)   p_kst 2.328070e-03   p_cons 8.027509e-01   p_joint 1.035439e-02

Joint ci ratio: 5.086968e-02	ci left: 9.876603e-03	ci right 1.039383e-02	k: 5877	n:580000
Cons ci ratio: 2.551055e-03	ci left: 8.017754e-01	ci right 8.038250e-01	k: 465625	n:580000
KS ci ratio: 1.066041e-01	ci left: 2.201842e-03	ci right 2.451446e-03	k: 1348	n:580000
MDC1   580000 perm   248 sec   (2336 perm/sec)   p_kst 2.324138e-03   p_cons 8.028017e-01   p_joint 1.013276e-02

Joint ci ratio: 5.146094e-02	ci left: 9.488287e-03	ci right 9.991120e-03	k: 5745	n:590000
Cons ci ratio: 2.528558e-03	ci left: 8.018826e-01	ci right 8.039144e-01	k: 473711	n:590000
KS ci ratio: 1.055143e-01	ci left: 2.210722e-03	ci right 2.458612e-03	k: 1376	n:590000
MDC1   590000 perm   255 sec   (2317 perm/sec)   p_kst 2.332203e-03   p_cons 8.029000e-01   p_joint 9.737288e-03

Joint ci ratio: 5.104084e-02	ci left: 9.486453e-03	ci right 9.984964e-03	k: 5840	n:600000
Cons ci ratio: 2.508798e-03	ci left: 8.017141e-01	ci right 8.037296e-01	k: 481634	n:600000
KS ci ratio: 1.049828e-01	ci left: 2.196595e-03	ci right 2.441583e-03	k: 1390	n:600000
MDC1   600000 perm   261 sec   (2297 perm/sec)   p_kst 2.316667e-03   p_cons 8.027233e-01   p_joint 9.733333e-03

Joint ci ratio: 5.260874e-02	ci left: 8.782316e-03	ci right 9.258430e-03	k: 5501	n:610000
Cons ci ratio: 2.607858e-03	ci left: 7.863875e-01	ci right 7.884426e-01	k: 480324	n:610000
KS ci ratio: 1.035400e-01	ci left: 2.222854e-03	ci right 2.467156e-03	k: 1429	n:610000
MDC1   610000 perm   268 sec   (2277 perm/sec)   p_kst 2.342623e-03   p_cons 7.874164e-01   p_joint 9.018033e-03

Joint ci ratio: 5.097850e-02	ci left: 9.205882e-03	ci right 9.689041e-03	k: 5856	n:620000
Cons ci ratio: 2.586756e-03	ci left: 7.863940e-01	ci right 7.884324e-01	k: 488197	n:620000
KS ci ratio: 1.027882e-01	ci left: 2.219999e-03	ci right 2.462108e-03	k: 1450	n:620000
MDC1   620000 perm   274 sec   (2260 perm/sec)   p_kst 2.338710e-03   p_cons 7.874145e-01   p_joint 9.445161e-03

Joint ci ratio: 5.054001e-02	ci left: 9.219609e-03	ci right 9.699204e-03	k: 5958	n:630000
Cons ci ratio: 2.565805e-03	ci left: 7.864464e-01	ci right 7.884684e-01	k: 496099	n:630000
KS ci ratio: 1.016725e-01	ci left: 2.234256e-03	ci right 2.475118e-03	k: 1482	n:630000
MDC1   630000 perm   281 sec   (2240 perm/sec)   p_kst 2.352381e-03   p_cons 7.874587e-01   p_joint 9.457143e-03

Joint ci ratio: 5.090720e-02	ci left: 8.945935e-03	ci right 9.414774e-03	k: 5874	n:640000
Cons ci ratio: 2.546520e-03	ci left: 7.863439e-01	ci right 7.883504e-01	k: 503903	n:640000
KS ci ratio: 1.008931e-01	ci left: 2.234373e-03	ci right 2.473292e-03	k: 1505	n:640000
MDC1   640000 perm   288 sec   (2222 perm/sec)   p_kst 2.351562e-03   p_cons 7.873484e-01   p_joint 9.178125e-03

Joint ci ratio: 5.059888e-02	ci left: 8.917666e-03	ci right 9.382110e-03	k: 5946	n:650000
Cons ci ratio: 2.526861e-03	ci left: 7.863509e-01	ci right 7.883419e-01	k: 511776	n:650000
KS ci ratio: 9.996776e-02	ci left: 2.241994e-03	ci right 2.479399e-03	k: 1533	n:650000
MDC1   650000 perm   295 sec   (2204 perm/sec)   p_kst 2.358462e-03   p_cons 7.873477e-01   p_joint 9.147692e-03

Outputting figure to mutsig2_images.part000000000103/MDC1.5_6326_650000_0.0023585_0.78735_0.0091477.png
                gene_name: MDC1
               theta_stop: 0.100 
                    nperm: 650000 
                     p_ks: 0.0024 
        ci_ks_bounds_left: 0.0022 
       ci_ks_bounds_right: 0.0025 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.0091 
     ci_joint_bounds_left: 0.0089 
    ci_joint_bounds_right: 0.0094 

Current progress: 31 percent done.
MBD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.519441e-01	ci left: 5.764078e-02	ci right 6.721608e-02	k: 623	n:10000
Cons ci ratio: 6.922441e-02	ci left: 2.343232e-01	ci right 2.512269e-01	k: 2427	n:10000
KS ci ratio: 1.872080e-01	ci left: 3.805695e-02	ci right 4.601263e-02	k: 419	n:10000
MBD1   10000 perm   2 sec   (6214 perm/sec)   p_kst 4.190000e-02   p_cons 2.427000e-01   p_joint 6.230000e-02

Joint ci ratio: 9.348920e-02	ci left: 7.701023e-02	ci right 8.461216e-02	k: 1615	n:20000
Cons ci ratio: 4.739036e-02	ci left: 2.488215e-01	ci right 2.609498e-01	k: 5097	n:20000
KS ci ratio: 1.293542e-01	ci left: 4.105370e-02	ci right 4.677985e-02	k: 877	n:20000
MBD1   20000 perm   4 sec   (5540 perm/sec)   p_kst 4.385000e-02   p_cons 2.548500e-01   p_joint 8.075000e-02

Joint ci ratio: 8.102858e-02	ci left: 6.942693e-02	ci right 7.532287e-02	k: 2170	n:30000
Cons ci ratio: 3.877583e-02	ci left: 2.491478e-01	ci right 2.590332e-01	k: 7622	n:30000
KS ci ratio: 1.062099e-01	ci left: 4.112198e-02	ci right 4.576696e-02	k: 1302	n:30000
MBD1   30000 perm   6 sec   (5325 perm/sec)   p_kst 4.340000e-02   p_cons 2.540667e-01   p_joint 7.233333e-02

Joint ci ratio: 8.282857e-02	ci left: 5.082452e-02	ci right 5.524065e-02	k: 2120	n:40000
Cons ci ratio: 3.361859e-02	ci left: 2.493916e-01	ci right 2.579442e-01	k: 10146	n:40000
KS ci ratio: 9.050223e-02	ci left: 4.276891e-02	ci right 4.684750e-02	k: 1791	n:40000
MBD1   40000 perm   8 sec   (5160 perm/sec)   p_kst 4.477500e-02   p_cons 2.536500e-01   p_joint 5.300000e-02

Outputting figure to mutsig2_images.part000000000103/MBD1.4_2072_40000_0.044775_0.25365_0.053.png
                gene_name: MBD1
               theta_stop: 0.091 
                    nperm: 40000 
                     p_ks: 0.045 
        ci_ks_bounds_left: 0.043 
       ci_ks_bounds_right: 0.047 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.053 
     ci_joint_bounds_left: 0.051 
    ci_joint_bounds_right: 0.055 

Current progress: 33 percent done.
MBL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.210328e-02	ci left: 5.888147e-01	ci right 6.081279e-01	k: 5985	n:10000
Cons ci ratio: 6.602499e-03	ci left: 9.691039e-01	ci right 9.756170e-01	k: 9725	n:10000
KS ci ratio: 4.259349e-02	ci left: 4.486973e-01	ci right 4.683269e-01	k: 4585	n:10000
MBL2   10000 perm   2 sec   (6226 perm/sec)   p_kst 4.585000e-01   p_cons 9.725000e-01   p_joint 5.985000e-01

Outputting figure to mutsig2_images.part000000000103/MBL2.4_763_10000_0.4585_0.9725_0.5985.png
                gene_name: MBL2
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 35 percent done.
MCC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.965300e-02	ci left: 6.264811e-01	ci right 6.454396e-01	k: 6360	n:10000
Cons ci ratio: 2.150284e-02	ci left: 7.603080e-01	ci right 7.769353e-01	k: 7687	n:10000
KS ci ratio: 5.157110e-02	ci left: 3.566483e-01	ci right 3.756298e-01	k: 3661	n:10000
MCC   10000 perm   2 sec   (5590 perm/sec)   p_kst 3.661000e-01   p_cons 7.687000e-01   p_joint 6.360000e-01

Outputting figure to mutsig2_images.part000000000103/MCC.4_3197_10000_0.3661_0.7687_0.636.png
                gene_name: MCC
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 38 percent done.
MCM10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.821140e-02	ci left: 3.882876e-01	ci right 4.075719e-01	k: 3979	n:10000
Cons ci ratio: 7.635134e-02	ci left: 2.005737e-01	ci right 2.165964e-01	k: 2085	n:10000
KS ci ratio: 4.539235e-02	ci left: 4.173773e-01	ci right 4.368652e-01	k: 4271	n:10000
MCM10   10000 perm   2 sec   (5957 perm/sec)   p_kst 4.271000e-01   p_cons 2.085000e-01   p_joint 3.979000e-01

Outputting figure to mutsig2_images.part000000000103/MCM10.4_2704_10000_0.4271_0.2085_0.3979.png
                gene_name: MCM10
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 40 percent done.
MCM8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.215805e-02	ci left: 1.460943e-01	ci right 1.603084e-01	k: 1531	n:10000
Cons ci ratio: 9.438752e-02	ci left: 1.401132e-01	ci right 1.540931e-01	k: 1470	n:10000
KS ci ratio: 1.506606e-01	ci left: 5.860517e-02	ci right 6.825107e-02	k: 633	n:10000
MCM8   10000 perm   2 sec   (5841 perm/sec)   p_kst 6.330000e-02   p_cons 1.470000e-01   p_joint 1.531000e-01

Joint ci ratio: 1.280629e-01	ci left: 4.187748e-02	ci right 4.765581e-02	k: 894	n:20000
Cons ci ratio: 6.980422e-02	ci left: 1.314252e-01	ci right 1.409808e-01	k: 2723	n:20000
KS ci ratio: 1.067153e-01	ci left: 5.981772e-02	ci right 6.660995e-02	k: 1263	n:20000
MCM8   20000 perm   4 sec   (5314 perm/sec)   p_kst 6.315000e-02   p_cons 1.361500e-01   p_joint 4.470000e-02

Joint ci ratio: 9.585679e-02	ci left: 5.026355e-02	ci right 5.535683e-02	k: 1583	n:30000
Cons ci ratio: 5.758395e-02	ci left: 1.299337e-01	ci right 1.376707e-01	k: 4013	n:30000
KS ci ratio: 8.576524e-02	ci left: 6.230123e-02	ci right 6.791668e-02	k: 1952	n:30000
MCM8   30000 perm   6 sec   (5113 perm/sec)   p_kst 6.506667e-02   p_cons 1.337667e-01   p_joint 5.276667e-02

Outputting figure to mutsig2_images.part000000000103/MCM8.4_2595_30000_0.065067_0.13377_0.052767.png
                gene_name: MCM8
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.065 
        ci_ks_bounds_left: 0.062 
       ci_ks_bounds_right: 0.068 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.053 
     ci_joint_bounds_left: 0.050 
    ci_joint_bounds_right: 0.055 

Current progress: 42 percent done.
MCM9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.254592e-02	ci left: 5.821915e-01	ci right 6.015549e-01	k: 5919	n:10000
Cons ci ratio: 6.677346e-02	ci left: 2.476661e-01	ci right 2.648761e-01	k: 2562	n:10000
KS ci ratio: 2.981327e-02	ci left: 6.239682e-01	ci right 6.429540e-01	k: 6335	n:10000
MCM9   10000 perm   2 sec   (6170 perm/sec)   p_kst 6.335000e-01   p_cons 2.562000e-01   p_joint 5.919000e-01

Outputting figure to mutsig2_images.part000000000103/MCM9.4_1200_10000_0.6335_0.2562_0.5919.png
                gene_name: MCM9
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 44 percent done.
MCPH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.100173e-02	ci left: 2.252368e-01	ci right 2.419187e-01	k: 2335	n:10000
Cons ci ratio: 3.794440e-02	ci left: 5.063518e-01	ci right 5.260388e-01	k: 5162	n:10000
KS ci ratio: 1.057003e-01	ci left: 1.144737e-01	ci right 1.273481e-01	k: 1208	n:10000
MCPH1   10000 perm   2 sec   (5937 perm/sec)   p_kst 1.208000e-01   p_cons 5.162000e-01   p_joint 2.335000e-01

Joint ci ratio: 5.232140e-02	ci left: 2.133835e-01	ci right 2.248982e-01	k: 4382	n:20000
Cons ci ratio: 2.669067e-02	ci left: 5.118981e-01	ci right 5.257964e-01	k: 10377	n:20000
KS ci ratio: 7.472519e-02	ci left: 1.164121e-01	ci right 1.254984e-01	k: 2418	n:20000
MCPH1   20000 perm   4 sec   (5349 perm/sec)   p_kst 1.209000e-01   p_cons 5.188500e-01   p_joint 2.191000e-01

Outputting figure to mutsig2_images.part000000000103/MCPH1.4_2572_20000_0.1209_0.51885_0.2191.png
                gene_name: MCPH1
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 46 percent done.
MCTP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.423102e-02	ci left: 5.575209e-01	ci right 5.770399e-01	k: 5673	n:10000
Cons ci ratio: 2.440813e-02	ci left: 7.116922e-01	ci right 7.293792e-01	k: 7206	n:10000
KS ci ratio: 4.506007e-02	ci left: 4.209661e-01	ci right 4.404743e-01	k: 4307	n:10000
MCTP1   10000 perm   2 sec   (5627 perm/sec)   p_kst 4.307000e-01   p_cons 7.206000e-01   p_joint 5.673000e-01

Outputting figure to mutsig2_images.part000000000103/MCTP1.4_3153_10000_0.4307_0.7206_0.5673.png
                gene_name: MCTP1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 48 percent done.
MAZ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.343015e-01	ci left: 7.320496e-02	ci right 8.384211e-02	k: 784	n:10000
Cons ci ratio: 1.321220e-01	ci left: 7.553121e-02	ci right 8.631442e-02	k: 808	n:10000
KS ci ratio: 2.413489e-01	ci left: 2.259324e-02	ci right 2.888717e-02	k: 256	n:10000
MAZ   10000 perm   2 sec   (6204 perm/sec)   p_kst 2.560000e-02   p_cons 8.080000e-02   p_joint 7.840000e-02

Joint ci ratio: 1.915958e-01	ci left: 1.853343e-02	ci right 2.250769e-02	k: 409	n:20000
Cons ci ratio: 9.016148e-02	ci left: 8.244363e-02	ci right 9.027712e-02	k: 1726	n:20000
KS ci ratio: 1.715217e-01	ci left: 2.326367e-02	ci right 2.767576e-02	k: 508	n:20000
MAZ   20000 perm   4 sec   (5649 perm/sec)   p_kst 2.540000e-02   p_cons 8.630000e-02   p_joint 2.045000e-02

Joint ci ratio: 1.261126e-01	ci left: 2.922917e-02	ci right 3.319563e-02	k: 935	n:30000
Cons ci ratio: 7.325396e-02	ci left: 8.393256e-02	ci right 9.034766e-02	k: 2613	n:30000
KS ci ratio: 1.388857e-01	ci left: 2.406758e-02	ci right 2.769170e-02	k: 775	n:30000
MAZ   30000 perm   6 sec   (5390 perm/sec)   p_kst 2.583333e-02   p_cons 8.710000e-02   p_joint 3.116667e-02

Joint ci ratio: 8.971882e-02	ci left: 4.350276e-02	ci right 4.761354e-02	k: 1821	n:40000
Cons ci ratio: 6.330414e-02	ci left: 8.469913e-02	ci right 9.026092e-02	k: 3498	n:40000
KS ci ratio: 1.182796e-01	ci left: 2.514215e-02	ci right 2.832706e-02	k: 1068	n:40000
MAZ   40000 perm   8 sec   (5236 perm/sec)   p_kst 2.670000e-02   p_cons 8.745000e-02   p_joint 4.552500e-02

Joint ci ratio: 1.023889e-01	ci left: 2.701992e-02	ci right 2.995517e-02	k: 1423	n:50000
Cons ci ratio: 5.934450e-02	ci left: 7.787322e-02	ci right 8.265565e-02	k: 4012	n:50000
KS ci ratio: 1.067926e-01	ci left: 2.483697e-02	ci right 2.765839e-02	k: 1311	n:50000
MAZ   50000 perm   10 sec   (5143 perm/sec)   p_kst 2.622000e-02   p_cons 8.024000e-02   p_joint 2.846000e-02

Joint ci ratio: 6.899713e-02	ci left: 4.928589e-02	ci right 5.282436e-02	k: 3062	n:60000
Cons ci ratio: 5.412873e-02	ci left: 7.820337e-02	ci right 8.257065e-02	k: 4822	n:60000
KS ci ratio: 9.699561e-02	ci left: 2.521316e-02	ci right 2.779958e-02	k: 1589	n:60000
MAZ   60000 perm   12 sec   (5037 perm/sec)   p_kst 2.648333e-02   p_cons 8.036667e-02   p_joint 5.103333e-02

Outputting figure to mutsig2_images.part000000000103/MAZ.3_1661_60000_0.026483_0.080367_0.051033.png
                gene_name: MAZ
               theta_stop: 0.097 
                    nperm: 60000 
                     p_ks: 0.026 
        ci_ks_bounds_left: 0.025 
       ci_ks_bounds_right: 0.028 
                   p_cons: 0.080 
      ci_cons_bounds_left: 0.078 
     ci_cons_bounds_right: 0.083 
                  p_joint: 0.051 
     ci_joint_bounds_left: 0.049 
    ci_joint_bounds_right: 0.053 

Current progress: 50 percent done.
MBIP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.551763e-02	ci left: 5.392844e-01	ci right 5.588870e-01	k: 5491	n:10000
Cons ci ratio: 4.339994e-02	ci left: 4.394169e-01	ci right 4.590127e-01	k: 4492	n:10000
KS ci ratio: 4.786111e-02	ci left: 3.917725e-01	ci right 4.110850e-01	k: 4014	n:10000
MBIP   10000 perm   2 sec   (6369 perm/sec)   p_kst 4.014000e-01   p_cons 4.492000e-01   p_joint 5.491000e-01

Outputting figure to mutsig2_images.part000000000103/MBIP.3_1071_10000_0.4014_0.4492_0.5491.png
                gene_name: MBIP
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 52 percent done.
MBTPS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.866147e-02	ci left: 6.421684e-01	ci right 6.609432e-01	k: 6516	n:10000
Cons ci ratio: 1.221900e-02	ci left: 9.057627e-01	ci right 9.169963e-01	k: 9115	n:10000
KS ci ratio: 3.980231e-02	ci left: 4.824548e-01	ci right 5.021497e-01	k: 4923	n:10000
MBTPS1   10000 perm   2 sec   (5891 perm/sec)   p_kst 4.923000e-01   p_cons 9.115000e-01   p_joint 6.516000e-01

Outputting figure to mutsig2_images.part000000000103/MBTPS1.3_3247_10000_0.4923_0.9115_0.6516.png
                gene_name: MBTPS1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 54 percent done.
MBTPS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.232929e-01	ci left: 8.611301e-02	ci right 9.752607e-02	k: 917	n:10000
Cons ci ratio: 2.191527e-01	ci left: 2.759554e-02	ci right 3.448123e-02	k: 309	n:10000
KS ci ratio: 9.491770e-02	ci left: 1.387411e-01	ci right 1.526660e-01	k: 1456	n:10000
MBTPS2   10000 perm   2 sec   (6442 perm/sec)   p_kst 1.456000e-01   p_cons 3.090000e-02   p_joint 9.170000e-02

Joint ci ratio: 9.685466e-02	ci left: 7.202203e-02	ci right 7.940189e-02	k: 1513	n:20000
Cons ci ratio: 1.603879e-01	ci left: 2.666999e-02	ci right 3.136827e-02	k: 579	n:20000
KS ci ratio: 6.665021e-02	ci left: 1.425134e-01	ci right 1.523893e-01	k: 2948	n:20000
MBTPS2   20000 perm   3 sec   (5932 perm/sec)   p_kst 1.474000e-01   p_cons 2.895000e-02   p_joint 7.565000e-02

Joint ci ratio: 1.421147e-01	ci left: 2.297315e-02	ci right 2.651970e-02	k: 741	n:30000
Cons ci ratio: 1.406636e-01	ci left: 2.345587e-02	ci right 2.703688e-02	k: 756	n:30000
KS ci ratio: 5.374826e-02	ci left: 1.465371e-01	ci right 1.546640e-01	k: 4517	n:30000
MBTPS2   30000 perm   5 sec   (5615 perm/sec)   p_kst 1.505667e-01   p_cons 2.520000e-02   p_joint 2.470000e-02

Joint ci ratio: 1.373737e-01	ci left: 1.857798e-02	ci right 2.134233e-02	k: 797	n:40000
Cons ci ratio: 1.220256e-01	ci left: 2.361333e-02	ci right 2.670613e-02	k: 1005	n:40000
KS ci ratio: 4.672110e-02	ci left: 1.461424e-01	ci right 1.531585e-01	k: 5985	n:40000
MBTPS2   40000 perm   7 sec   (5431 perm/sec)   p_kst 1.496250e-01   p_cons 2.512500e-02   p_joint 1.992500e-02

Joint ci ratio: 1.354284e-01	ci left: 1.536288e-02	ci right 1.761376e-02	k: 823	n:50000
Cons ci ratio: 1.087227e-01	ci left: 2.396064e-02	ci right 2.673484e-02	k: 1266	n:50000
KS ci ratio: 4.182320e-02	ci left: 1.463056e-01	ci right 1.525752e-01	k: 7471	n:50000
MBTPS2   50000 perm   9 sec   (5309 perm/sec)   p_kst 1.494200e-01   p_cons 2.532000e-02   p_joint 1.646000e-02

Joint ci ratio: 1.070740e-01	ci left: 2.067884e-02	ci right 2.303440e-02	k: 1310	n:60000
Cons ci ratio: 9.987173e-02	ci left: 2.378171e-02	ci right 2.629786e-02	k: 1501	n:60000
KS ci ratio: 3.837669e-02	ci left: 1.452831e-01	ci right 1.509843e-01	k: 8887	n:60000
MBTPS2   60000 perm   12 sec   (5198 perm/sec)   p_kst 1.481167e-01   p_cons 2.501667e-02   p_joint 2.183333e-02

Joint ci ratio: 1.122333e-01	ci left: 1.616640e-02	ci right 1.810249e-02	k: 1198	n:70000
Cons ci ratio: 9.247238e-02	ci left: 2.386997e-02	ci right 2.619820e-02	k: 1751	n:70000
KS ci ratio: 3.570459e-02	ci left: 1.442709e-01	ci right 1.495298e-01	k: 10282	n:70000
MBTPS2   70000 perm   14 sec   (5083 perm/sec)   p_kst 1.468857e-01   p_cons 2.501429e-02   p_joint 1.711429e-02

Joint ci ratio: 1.019706e-01	ci left: 1.721183e-02	ci right 1.907334e-02	k: 1450	n:80000
Cons ci ratio: 8.666191e-02	ci left: 2.385572e-02	ci right 2.602892e-02	k: 1994	n:80000
KS ci ratio: 3.347544e-02	ci left: 1.438701e-01	ci right 1.487806e-01	k: 11705	n:80000
MBTPS2   80000 perm   16 sec   (4971 perm/sec)   p_kst 1.463125e-01   p_cons 2.492500e-02   p_joint 1.812500e-02

Joint ci ratio: 8.480625e-02	ci left: 2.220457e-02	ci right 2.418188e-02	k: 2086	n:90000
Cons ci ratio: 7.538614e-02	ci left: 2.806603e-02	ci right 3.027556e-02	k: 2624	n:90000
KS ci ratio: 3.153187e-02	ci left: 1.442398e-01	ci right 1.488719e-01	k: 13189	n:90000
MBTPS2   90000 perm   18 sec   (4875 perm/sec)   p_kst 1.465444e-01   p_cons 2.915556e-02   p_joint 2.317778e-02

Outputting figure to mutsig2_images.part000000000103/MBTPS2.3_1604_90000_0.14654_0.029156_0.023178.png
                gene_name: MBTPS2
               theta_stop: 0.085 
                    nperm: 90000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.029 
      ci_cons_bounds_left: 0.028 
     ci_cons_bounds_right: 0.030 
                  p_joint: 0.023 
     ci_joint_bounds_left: 0.022 
    ci_joint_bounds_right: 0.024 

Current progress: 56 percent done.
MC5R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.432992e-01	ci left: 2.221701e-02	ci right 2.846368e-02	k: 252	n:10000
Cons ci ratio: 8.392110e-02	ci left: 1.715307e-01	ci right 1.866567e-01	k: 1790	n:10000
KS ci ratio: 2.794182e-01	ci left: 1.660112e-02	ci right 2.208394e-02	k: 192	n:10000
MC5R   10000 perm   1 sec   (7670 perm/sec)   p_kst 1.920000e-02   p_cons 1.790000e-01   p_joint 2.520000e-02

Joint ci ratio: 1.467418e-01	ci left: 3.191701e-02	ci right 3.701950e-02	k: 688	n:20000
Cons ci ratio: 5.929161e-02	ci left: 1.740055e-01	ci right 1.846879e-01	k: 3586	n:20000
KS ci ratio: 1.968048e-01	ci left: 1.753359e-02	ci right 2.140790e-02	k: 388	n:20000
MC5R   20000 perm   3 sec   (6637 perm/sec)   p_kst 1.940000e-02   p_cons 1.793000e-01   p_joint 3.440000e-02

Joint ci ratio: 1.740149e-01	ci left: 1.518449e-02	ci right 1.811019e-02	k: 498	n:30000
Cons ci ratio: 4.856292e-02	ci left: 1.740824e-01	ci right 1.827800e-01	k: 5352	n:30000
KS ci ratio: 1.603418e-01	ci left: 1.796530e-02	ci right 2.112871e-02	k: 585	n:30000
MC5R   30000 perm   5 sec   (6246 perm/sec)   p_kst 1.950000e-02   p_cons 1.784000e-01   p_joint 1.660000e-02

Joint ci ratio: 1.750952e-01	ci left: 1.129070e-02	ci right 1.348094e-02	k: 494	n:40000
Cons ci ratio: 4.206160e-02	ci left: 1.746343e-01	ci right 1.821624e-01	k: 7135	n:40000
KS ci ratio: 1.413089e-01	ci left: 1.753979e-02	ci right 2.023070e-02	k: 754	n:40000
MC5R   40000 perm   7 sec   (6008 perm/sec)   p_kst 1.885000e-02   p_cons 1.783750e-01   p_joint 1.235000e-02

Joint ci ratio: 1.275494e-01	ci left: 1.735627e-02	ci right 1.974009e-02	k: 926	n:50000
Cons ci ratio: 3.779396e-02	ci left: 1.737031e-01	ci right 1.804144e-01	k: 8852	n:50000
KS ci ratio: 1.269230e-01	ci left: 1.753064e-02	ci right 1.992570e-02	k: 935	n:50000
MC5R   50000 perm   9 sec   (5818 perm/sec)   p_kst 1.870000e-02   p_cons 1.770400e-01   p_joint 1.852000e-02

Joint ci ratio: 1.218128e-01	ci left: 1.593221e-02	ci right 1.801489e-02	k: 1017	n:60000
Cons ci ratio: 3.390833e-02	ci left: 1.790688e-01	ci right 1.852620e-01	k: 10929	n:60000
KS ci ratio: 1.164043e-01	ci left: 1.746917e-02	ci right 1.964442e-02	k: 1112	n:60000
MC5R   60000 perm   11 sec   (5612 perm/sec)   p_kst 1.853333e-02   p_cons 1.821500e-01   p_joint 1.695000e-02

Joint ci ratio: 1.075378e-01	ci left: 1.762588e-02	ci right 1.964287e-02	k: 1303	n:70000
Cons ci ratio: 3.143323e-02	ci left: 1.789206e-01	ci right 1.846487e-01	k: 12724	n:70000
KS ci ratio: 1.078331e-01	ci left: 1.752853e-02	ci right 1.954023e-02	k: 1296	n:70000
MC5R   70000 perm   13 sec   (5482 perm/sec)   p_kst 1.851429e-02   p_cons 1.817714e-01   p_joint 1.861429e-02

Joint ci ratio: 1.037320e-01	ci left: 1.662701e-02	ci right 1.845822e-02	k: 1402	n:80000
Cons ci ratio: 2.940169e-02	ci left: 1.791203e-01	ci right 1.844778e-01	k: 14543	n:80000
KS ci ratio: 9.998860e-02	ci left: 1.790665e-02	ci right 1.980347e-02	k: 1507	n:80000
MC5R   80000 perm   15 sec   (5369 perm/sec)   p_kst 1.883750e-02   p_cons 1.817875e-01   p_joint 1.752500e-02

Joint ci ratio: 9.007191e-02	ci left: 1.968194e-02	ci right 2.154914e-02	k: 1854	n:90000
Cons ci ratio: 2.773159e-02	ci left: 1.791524e-01	ci right 1.842015e-01	k: 16350	n:90000
KS ci ratio: 9.436948e-02	ci left: 1.792265e-02	ci right 1.970856e-02	k: 1692	n:90000
MC5R   90000 perm   17 sec   (5258 perm/sec)   p_kst 1.880000e-02   p_cons 1.816667e-01   p_joint 2.060000e-02

Outputting figure to mutsig2_images.part000000000103/MC5R.3_982_90000_0.0188_0.18167_0.0206.png
                gene_name: MC5R
               theta_stop: 0.094 
                    nperm: 90000 
                     p_ks: 0.019 
        ci_ks_bounds_left: 0.018 
       ci_ks_bounds_right: 0.020 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.021 
     ci_joint_bounds_left: 0.020 
    ci_joint_bounds_right: 0.022 

Current progress: 58 percent done.
MCM6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.913930e-02	ci left: 4.908512e-01	ci right 5.105484e-01	k: 5007	n:10000
Cons ci ratio: 8.652199e-02	ci left: 1.628811e-01	ci right 1.777115e-01	k: 1702	n:10000
KS ci ratio: 4.013009e-02	ci left: 4.783575e-01	ci right 4.980493e-01	k: 4882	n:10000
MCM6   10000 perm   2 sec   (6021 perm/sec)   p_kst 4.882000e-01   p_cons 1.702000e-01   p_joint 5.007000e-01

Outputting figure to mutsig2_images.part000000000103/MCM6.3_2534_10000_0.4882_0.1702_0.5007.png
                gene_name: MCM6
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 60 percent done.
MCM7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.968114e-02	ci left: 3.740545e-01	ci right 3.932134e-01	k: 3836	n:10000
Cons ci ratio: 2.623654e-02	ci left: 6.814356e-01	ci right 6.996533e-01	k: 6906	n:10000
KS ci ratio: 6.161973e-02	ci left: 2.791374e-01	ci right 2.969862e-01	k: 2880	n:10000
MCM7   10000 perm   2 sec   (6134 perm/sec)   p_kst 2.880000e-01   p_cons 6.906000e-01   p_joint 3.836000e-01

Outputting figure to mutsig2_images.part000000000103/MCM7.3_2220_10000_0.288_0.6906_0.3836.png
                gene_name: MCM7
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 62 percent done.
MCOLN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.422738e-02	ci left: 2.626030e-01	ci right 2.801304e-01	k: 2713	n:10000
Cons ci ratio: 2.028428e-02	ci left: 7.806667e-01	ci right 7.967648e-01	k: 7888	n:10000
KS ci ratio: 1.541967e-01	ci left: 5.600212e-02	ci right 6.545578e-02	k: 606	n:10000
MCOLN2   10000 perm   2 sec   (6631 perm/sec)   p_kst 6.060000e-02   p_cons 7.888000e-01   p_joint 2.713000e-01

Joint ci ratio: 4.801600e-02	ci left: 2.439114e-01	ci right 2.559614e-01	k: 4998	n:20000
Cons ci ratio: 1.416635e-02	ci left: 7.872165e-01	ci right 7.984982e-01	k: 15858	n:20000
KS ci ratio: 1.082782e-01	ci left: 5.816063e-02	ci right 6.486755e-02	k: 1229	n:20000
MCOLN2   20000 perm   3 sec   (5932 perm/sec)   p_kst 6.145000e-02   p_cons 7.929000e-01   p_joint 2.499000e-01

Joint ci ratio: 5.293009e-02	ci left: 1.504600e-01	ci right 1.586736e-01	k: 4636	n:30000
Cons ci ratio: 1.146217e-02	ci left: 7.912604e-01	ci right 8.004156e-01	k: 23876	n:30000
KS ci ratio: 8.923694e-02	ci left: 5.773026e-02	ci right 6.315525e-02	k: 1812	n:30000
MCOLN2   30000 perm   5 sec   (5613 perm/sec)   p_kst 6.040000e-02   p_cons 7.958667e-01   p_joint 1.545333e-01

Outputting figure to mutsig2_images.part000000000103/MCOLN2.3_1757_30000_0.0604_0.79587_0.15453.png
                gene_name: MCOLN2
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.060 
        ci_ks_bounds_left: 0.058 
       ci_ks_bounds_right: 0.063 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 65 percent done.
MDH1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.159954e-02	ci left: 7.586885e-01	ci right 7.753556e-01	k: 7671	n:10000
Cons ci ratio: 4.516126e-02	ci left: 4.198695e-01	ci right 4.393715e-01	k: 4296	n:10000
KS ci ratio: 4.511523e-02	ci left: 4.203680e-01	ci right 4.398728e-01	k: 4301	n:10000
MDH1B   10000 perm   2 sec   (6387 perm/sec)   p_kst 4.301000e-01   p_cons 4.296000e-01   p_joint 7.671000e-01

Outputting figure to mutsig2_images.part000000000103/MDH1B.3_1605_10000_0.4301_0.4296_0.7671.png
                gene_name: MDH1B
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 67 percent done.
MDM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.430771e-02	ci left: 2.095461e-01	ci right 2.258187e-01	k: 2176	n:10000
Cons ci ratio: 1.726867e-01	ci left: 4.475507e-02	ci right 5.331009e-02	k: 489	n:10000
KS ci ratio: 5.484792e-02	ci left: 3.287271e-01	ci right 3.473673e-01	k: 3380	n:10000
MDM1   10000 perm   2 sec   (6428 perm/sec)   p_kst 3.380000e-01   p_cons 4.890000e-02   p_joint 2.176000e-01

Joint ci ratio: 9.094175e-02	ci left: 8.112153e-02	ci right 8.889961e-02	k: 1699	n:20000
Cons ci ratio: 1.210110e-01	ci left: 4.682585e-02	ci right 5.290587e-02	k: 996	n:20000
KS ci ratio: 3.861495e-02	ci left: 3.334335e-01	ci right 3.466130e-01	k: 6800	n:20000
MDM1   20000 perm   4 sec   (5712 perm/sec)   p_kst 3.400000e-01   p_cons 4.980000e-02   p_joint 8.495000e-02

Joint ci ratio: 7.855931e-02	ci left: 7.361492e-02	ci right 7.966737e-02	k: 2298	n:30000
Cons ci ratio: 9.981082e-02	ci left: 4.645421e-02	ci right 5.136696e-02	k: 1466	n:30000
KS ci ratio: 3.148804e-02	ci left: 3.352363e-01	ci right 3.459946e-01	k: 10218	n:30000
MDM1   30000 perm   5 sec   (5460 perm/sec)   p_kst 3.406000e-01   p_cons 4.886667e-02   p_joint 7.660000e-02

Outputting figure to mutsig2_images.part000000000103/MDM1.3_2372_30000_0.3406_0.048867_0.0766.png
                gene_name: MDM1
               theta_stop: 0.100 
                    nperm: 30000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.049 
      ci_cons_bounds_left: 0.046 
     ci_cons_bounds_right: 0.051 
                  p_joint: 0.077 
     ci_joint_bounds_left: 0.074 
    ci_joint_bounds_right: 0.080 

Current progress: 69 percent done.
ME2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.688109e-03	ci left: 9.683648e-01	ci right 9.749566e-01	k: 9718	n:10000
KS ci ratio: 6.627059e-03	ci left: 9.688927e-01	ci right 9.754284e-01	k: 9723	n:10000
ME2   10000 perm   2 sec   (6089 perm/sec)   p_kst 9.723000e-01   p_cons 9.718000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000103/ME2.3_1815_10000_0.9723_0.9718_1.png
                gene_name: ME2
               theta_stop: 0.0067 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
MECP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.432872e-02	ci left: 5.561176e-01	ci right 5.756439e-01	k: 5659	n:10000
Cons ci ratio: 7.266726e-02	ci left: 2.171426e-01	ci right 2.336177e-01	k: 2253	n:10000
KS ci ratio: 2.172642e-02	ci left: 7.565633e-01	ci right 7.732821e-01	k: 7650	n:10000
MECP2   10000 perm   2 sec   (6596 perm/sec)   p_kst 7.650000e-01   p_cons 2.253000e-01   p_joint 5.659000e-01

Outputting figure to mutsig2_images.part000000000103/MECP2.3_1539_10000_0.765_0.2253_0.5659.png
                gene_name: MECP2
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 73 percent done.
MBD3L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.335166e-02	ci left: 8.899537e-01	ci right 9.020145e-01	k: 8961	n:10000
Cons ci ratio: 3.563252e-02	ci left: 5.376819e-01	ci right 5.572905e-01	k: 5475	n:10000
KS ci ratio: 3.592106e-02	ci left: 5.336759e-01	ci right 5.532988e-01	k: 5435	n:10000
MBD3L1   10000 perm   1 sec   (7476 perm/sec)   p_kst 5.435000e-01   p_cons 5.475000e-01   p_joint 8.961000e-01

Outputting figure to mutsig2_images.part000000000103/MBD3L1.2_589_10000_0.5435_0.5475_0.8961.png
                gene_name: MBD3L1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 75 percent done.
MBD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.805205e-01	ci left: 8.505237e-03	ci right 1.258745e-02	k: 104	n:10000
Cons ci ratio: 2.736895e-01	ci left: 1.734654e-02	ci right 2.293792e-02	k: 200	n:10000
KS ci ratio: 2.631913e-01	ci left: 1.884073e-02	ci right 2.464254e-02	k: 216	n:10000
MBD4   10000 perm   2 sec   (6327 perm/sec)   p_kst 2.160000e-02   p_cons 2.000000e-02   p_joint 1.040000e-02

Joint ci ratio: 3.761731e-01	ci left: 4.386465e-03	ci right 6.461320e-03	k: 107	n:20000
Cons ci ratio: 1.911204e-01	ci left: 1.862872e-02	ci right 2.261236e-02	k: 411	n:20000
KS ci ratio: 1.918348e-01	ci left: 1.848579e-02	ci right 2.245535e-02	k: 408	n:20000
MBD4   20000 perm   3 sec   (5879 perm/sec)   p_kst 2.040000e-02   p_cons 2.055000e-02   p_joint 5.350000e-03

Joint ci ratio: 2.929386e-01	ci left: 5.064840e-03	ci right 6.832899e-03	k: 177	n:30000
Cons ci ratio: 1.551556e-01	ci left: 1.921493e-02	ci right 2.247879e-02	k: 624	n:30000
KS ci ratio: 1.617551e-01	ci left: 1.764517e-02	ci right 2.078225e-02	k: 575	n:30000
MBD4   30000 perm   5 sec   (5602 perm/sec)   p_kst 1.916667e-02   p_cons 2.080000e-02   p_joint 5.900000e-03

Joint ci ratio: 2.571681e-01	ci left: 5.032596e-03	ci right 6.540513e-03	k: 230	n:40000
Cons ci ratio: 1.330170e-01	ci left: 1.983485e-02	ci right 2.268524e-02	k: 849	n:40000
KS ci ratio: 1.424672e-01	ci left: 1.725026e-02	ci right 1.992028e-02	k: 742	n:40000
MBD4   40000 perm   7 sec   (5454 perm/sec)   p_kst 1.855000e-02   p_cons 2.122500e-02   p_joint 5.750000e-03

Joint ci ratio: 2.315358e-01	ci left: 5.040112e-03	ci right 6.378257e-03	k: 284	n:50000
Cons ci ratio: 1.188316e-01	ci left: 2.003289e-02	ci right 2.258311e-02	k: 1064	n:50000
KS ci ratio: 1.270614e-01	ci left: 1.749189e-02	ci right 1.988446e-02	k: 933	n:50000
MBD4   50000 perm   9 sec   (5309 perm/sec)   p_kst 1.866000e-02   p_cons 2.128000e-02   p_joint 5.680000e-03

Joint ci ratio: 1.808825e-01	ci left: 7.063887e-03	ci right 8.484346e-03	k: 465	n:60000
Cons ci ratio: 1.088266e-01	ci left: 2.001358e-02	ci right 2.233306e-02	k: 1269	n:60000
KS ci ratio: 1.148885e-01	ci left: 1.793877e-02	ci right 2.014143e-02	k: 1141	n:60000
MBD4   60000 perm   12 sec   (5174 perm/sec)   p_kst 1.901667e-02   p_cons 2.115000e-02   p_joint 7.750000e-03

Joint ci ratio: 1.666430e-01	ci left: 7.189014e-03	ci right 8.509415e-03	k: 548	n:70000
Cons ci ratio: 1.005002e-01	ci left: 2.020135e-02	ci right 2.235287e-02	k: 1488	n:70000
KS ci ratio: 1.062173e-01	ci left: 1.807102e-02	ci right 2.011197e-02	k: 1335	n:70000
MBD4   70000 perm   14 sec   (5077 perm/sec)   p_kst 1.907143e-02   p_cons 2.125714e-02   p_joint 7.828571e-03

Joint ci ratio: 1.912307e-01	ci left: 4.725273e-03	ci right 5.736119e-03	k: 417	n:80000
Cons ci ratio: 9.388867e-02	ci left: 2.032285e-02	ci right 2.233707e-02	k: 1705	n:80000
KS ci ratio: 9.918714e-02	ci left: 1.819932e-02	ci right 2.011078e-02	k: 1531	n:80000
MBD4   80000 perm   16 sec   (4954 perm/sec)   p_kst 1.913750e-02   p_cons 2.131250e-02   p_joint 5.212500e-03

Joint ci ratio: 1.519086e-01	ci left: 6.786287e-03	ci right 7.912483e-03	k: 660	n:90000
Cons ci ratio: 8.871417e-02	ci left: 2.029053e-02	ci right 2.218495e-02	k: 1910	n:90000
KS ci ratio: 9.306145e-02	ci left: 1.843286e-02	ci right 2.024276e-02	k: 1739	n:90000
MBD4   90000 perm   18 sec   (4869 perm/sec)   p_kst 1.932222e-02   p_cons 2.122222e-02   p_joint 7.333333e-03

Joint ci ratio: 1.464872e-01	ci left: 6.588946e-03	ci right 7.639948e-03	k: 710	n:100000
Cons ci ratio: 8.400688e-02	ci left: 2.041403e-02	ci right 2.221389e-02	k: 2130	n:100000
KS ci ratio: 8.799241e-02	ci left: 1.860302e-02	ci right 2.032501e-02	k: 1945	n:100000
MBD4   100000 perm   21 sec   (4755 perm/sec)   p_kst 1.945000e-02   p_cons 2.130000e-02   p_joint 7.100000e-03

Joint ci ratio: 1.431299e-01	ci left: 6.287772e-03	ci right 7.265778e-03	k: 744	n:110000
Cons ci ratio: 8.020414e-02	ci left: 2.040139e-02	ci right 2.211489e-02	k: 2337	n:110000
KS ci ratio: 8.439341e-02	ci left: 1.842391e-02	ci right 2.005612e-02	k: 2115	n:110000
MBD4   110000 perm   24 sec   (4670 perm/sec)   p_kst 1.922727e-02   p_cons 2.124545e-02   p_joint 6.763636e-03

Joint ci ratio: 1.369286e-01	ci left: 6.318658e-03	ci right 7.255416e-03	k: 813	n:120000
Cons ci ratio: 7.726368e-02	ci left: 2.018799e-02	ci right 2.181861e-02	k: 2519	n:120000
KS ci ratio: 8.070017e-02	ci left: 1.850456e-02	ci right 2.006879e-02	k: 2313	n:120000
MBD4   120000 perm   26 sec   (4590 perm/sec)   p_kst 1.927500e-02   p_cons 2.099167e-02   p_joint 6.775000e-03

Joint ci ratio: 1.425331e-01	ci left: 5.372161e-03	ci right 6.203963e-03	k: 751	n:130000
Cons ci ratio: 7.424646e-02	ci left: 2.021232e-02	ci right 2.177838e-02	k: 2728	n:130000
KS ci ratio: 7.751585e-02	ci left: 1.854393e-02	ci right 2.004685e-02	k: 2507	n:130000
MBD4   130000 perm   29 sec   (4489 perm/sec)   p_kst 1.928462e-02   p_cons 2.098462e-02   p_joint 5.776923e-03

Joint ci ratio: 1.370802e-01	ci left: 5.408919e-03	ci right 6.211757e-03	k: 812	n:140000
Cons ci ratio: 7.137130e-02	ci left: 2.033950e-02	ci right 2.185186e-02	k: 2952	n:140000
KS ci ratio: 7.458253e-02	ci left: 1.862781e-02	ci right 2.007791e-02	k: 2708	n:140000
MBD4   140000 perm   32 sec   (4425 perm/sec)   p_kst 1.934286e-02   p_cons 2.108571e-02   p_joint 5.800000e-03

Joint ci ratio: 1.408116e-01	ci left: 4.777946e-03	ci right 5.508050e-03	k: 770	n:150000
Cons ci ratio: 6.907320e-02	ci left: 2.029343e-02	ci right 2.175183e-02	k: 3152	n:150000
KS ci ratio: 7.198407e-02	ci left: 1.868833e-02	ci right 2.009033e-02	k: 2907	n:150000
MBD4   150000 perm   35 sec   (4332 perm/sec)   p_kst 1.938000e-02   p_cons 2.101333e-02   p_joint 5.133333e-03

Joint ci ratio: 1.191004e-01	ci left: 6.324300e-03	ci right 7.131230e-03	k: 1075	n:160000
Cons ci ratio: 6.701431e-02	ci left: 2.023537e-02	ci right 2.164456e-02	k: 3349	n:160000
KS ci ratio: 6.986922e-02	ci left: 1.861919e-02	ci right 1.997330e-02	k: 3086	n:160000
MBD4   160000 perm   37 sec   (4272 perm/sec)   p_kst 1.928750e-02   p_cons 2.093125e-02   p_joint 6.718750e-03

Joint ci ratio: 1.312022e-01	ci left: 4.880694e-03	ci right 5.571639e-03	k: 887	n:170000
Cons ci ratio: 6.497966e-02	ci left: 2.027733e-02	ci right 2.164495e-02	k: 3562	n:170000
KS ci ratio: 6.748931e-02	ci left: 1.880168e-02	ci right 2.012066e-02	k: 3307	n:170000
MBD4   170000 perm   40 sec   (4209 perm/sec)   p_kst 1.945294e-02   p_cons 2.095294e-02   p_joint 5.217647e-03

Joint ci ratio: 1.273855e-01	ci left: 4.899845e-03	ci right 5.571797e-03	k: 941	n:180000
Cons ci ratio: 6.317102e-02	ci left: 2.028239e-02	ci right 2.161088e-02	k: 3769	n:180000
KS ci ratio: 6.548864e-02	ci left: 1.887712e-02	ci right 2.016064e-02	k: 3512	n:180000
MBD4   180000 perm   43 sec   (4150 perm/sec)   p_kst 1.951111e-02   p_cons 2.093889e-02   p_joint 5.227778e-03

Joint ci ratio: 1.083064e-01	ci left: 6.476354e-03	ci right 7.223022e-03	k: 1300	n:190000
Cons ci ratio: 6.137162e-02	ci left: 2.037551e-02	ci right 2.167074e-02	k: 3993	n:190000
KS ci ratio: 6.385769e-02	ci left: 1.882597e-02	ci right 2.007296e-02	k: 3694	n:190000
MBD4   190000 perm   46 sec   (4094 perm/sec)   p_kst 1.944211e-02   p_cons 2.101579e-02   p_joint 6.842105e-03

Joint ci ratio: 1.056991e-01	ci left: 6.468837e-03	ci right 7.195568e-03	k: 1365	n:200000
Cons ci ratio: 5.982647e-02	ci left: 2.038591e-02	ci right 2.164803e-02	k: 4202	n:200000
KS ci ratio: 6.250743e-02	ci left: 1.868183e-02	ci right 1.989216e-02	k: 3856	n:200000
MBD4   200000 perm   50 sec   (4039 perm/sec)   p_kst 1.928000e-02   p_cons 2.101000e-02   p_joint 6.825000e-03

Joint ci ratio: 1.013633e-01	ci left: 6.712837e-03	ci right 7.434203e-03	k: 1484	n:210000
Cons ci ratio: 5.850767e-02	ci left: 2.031588e-02	ci right 2.154501e-02	k: 4394	n:210000
KS ci ratio: 6.096916e-02	ci left: 1.871584e-02	ci right 1.989748e-02	k: 4053	n:210000
MBD4   210000 perm   53 sec   (3989 perm/sec)   p_kst 1.930000e-02   p_cons 2.092381e-02   p_joint 7.066667e-03

Joint ci ratio: 9.870474e-02	ci left: 6.766688e-03	ci right 7.473665e-03	k: 1565	n:220000
Cons ci ratio: 5.713896e-02	ci left: 2.034663e-02	ci right 2.154786e-02	k: 4607	n:220000
KS ci ratio: 5.975451e-02	ci left: 1.861273e-02	ci right 1.976363e-02	k: 4220	n:220000
MBD4   220000 perm   56 sec   (3936 perm/sec)   p_kst 1.918182e-02   p_cons 2.094091e-02   p_joint 7.113636e-03

Outputting figure to mutsig2_images.part000000000103/MBD4.2_1775_220000_0.019182_0.020941_0.0071136.png
                gene_name: MBD4
               theta_stop: 0.099 
                    nperm: 220000 
                     p_ks: 0.019 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.020 
                   p_cons: 0.021 
      ci_cons_bounds_left: 0.020 
     ci_cons_bounds_right: 0.022 
                  p_joint: 0.0071 
     ci_joint_bounds_left: 0.0068 
    ci_joint_bounds_right: 0.0075 

Current progress: 77 percent done.
MBNL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.196764e-02	ci left: 9.091566e-01	ci right 9.202004e-01	k: 9148	n:10000
Cons ci ratio: 9.086581e-02	ci left: 1.497240e-01	ci right 1.640764e-01	k: 1568	n:10000
KS ci ratio: 1.514897e-02	ci left: 8.633528e-01	ci right 8.766308e-01	k: 8701	n:10000
MBNL1   10000 perm   2 sec   (6641 perm/sec)   p_kst 8.701000e-01   p_cons 1.568000e-01   p_joint 9.148000e-01

Outputting figure to mutsig2_images.part000000000103/MBNL1.2_1307_10000_0.8701_0.1568_0.9148.png
                gene_name: MBNL1
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 79 percent done.
MBNL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.778928e-02	ci left: 6.561554e-01	ci right 6.747481e-01	k: 6655	n:10000
Cons ci ratio: 1.840208e-03	ci left: 9.967917e-01	ci right 9.986996e-01	k: 9979	n:10000
KS ci ratio: 5.187238e-02	ci left: 3.539639e-01	ci right 3.729157e-01	k: 3634	n:10000
MBNL2   10000 perm   1 sec   (6928 perm/sec)   p_kst 3.634000e-01   p_cons 9.979000e-01   p_joint 6.655000e-01

Outputting figure to mutsig2_images.part000000000103/MBNL2.2_1249_10000_0.3634_0.9979_0.6655.png
                gene_name: MBNL2
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.67 

Current progress: 81 percent done.
MC2R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.199653e-02	ci left: 5.904206e-01	ci right 6.097211e-01	k: 6001	n:10000
Cons ci ratio: 6.154471e-02	ci left: 2.796327e-01	ci right 2.974906e-01	k: 2885	n:10000
KS ci ratio: 3.047144e-02	ci left: 6.137180e-01	ci right 6.328101e-01	k: 6233	n:10000
MC2R   10000 perm   1 sec   (7374 perm/sec)   p_kst 6.233000e-01   p_cons 2.885000e-01   p_joint 6.001000e-01

Outputting figure to mutsig2_images.part000000000103/MC2R.2_898_10000_0.6233_0.2885_0.6001.png
                gene_name: MC2R
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 83 percent done.
MC3R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.978354e-03	ci left: 9.877409e-01	ci right 9.917661e-01	k: 9899	n:10000
KS ci ratio: 1.615832e-02	ci left: 8.477417e-01	ci right 8.616509e-01	k: 8548	n:10000
MC3R   10000 perm   1 sec   (7016 perm/sec)   p_kst 8.548000e-01   p_cons 9.899000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000103/MC3R.2_976_10000_0.8548_0.9899_1.png
                gene_name: MC3R
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 85 percent done.
MC4R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.216940e-01	ci left: 8.825186e-02	ci right 9.978590e-02	k: 939	n:10000
KS ci ratio: 1.855357e-02	ci left: 8.092795e-01	ci right 8.245354e-01	k: 8170	n:10000
MC4R   10000 perm   1 sec   (6872 perm/sec)   p_kst 8.170000e-01   p_cons 9.390000e-02   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 8.547643e-02	ci left: 9.106848e-02	ci right 9.924966e-02	k: 1902	n:20000
KS ci ratio: 1.304652e-02	ci left: 8.132388e-01	ci right 8.239684e-01	k: 16373	n:20000
MC4R   20000 perm   3 sec   (6119 perm/sec)   p_kst 8.186500e-01   p_cons 9.510000e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000103/MC4R.2_1003_20000_0.81865_0.0951_1.png
                gene_name: MC4R
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.095 
      ci_cons_bounds_left: 0.091 
     ci_cons_bounds_right: 0.099 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
MCF2L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.895376e-02	ci left: 3.810207e-01	ci right 4.002431e-01	k: 3906	n:10000
Cons ci ratio: 1.301200e-01	ci left: 7.776183e-02	ci right 8.868240e-02	k: 831	n:10000
KS ci ratio: 4.394775e-02	ci left: 4.332319e-01	ci right 4.528014e-01	k: 4430	n:10000
MCF2L   10000 perm   2 sec   (5773 perm/sec)   p_kst 4.430000e-01   p_cons 8.310000e-02   p_joint 3.906000e-01

Joint ci ratio: 4.998298e-02	ci left: 2.292863e-01	ci right 2.410908e-01	k: 4703	n:20000
Cons ci ratio: 9.210118e-02	ci left: 7.921235e-02	ci right 8.690937e-02	k: 1660	n:20000
KS ci ratio: 3.108159e-02	ci left: 4.360494e-01	ci right 4.498671e-01	k: 8859	n:20000
MCF2L   20000 perm   4 sec   (5157 perm/sec)   p_kst 4.429500e-01   p_cons 8.300000e-02   p_joint 2.351500e-01

Outputting figure to mutsig2_images.part000000000103/MCF2L.2_3764_20000_0.44295_0.083_0.23515.png
                gene_name: MCF2L
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.083 
      ci_cons_bounds_left: 0.079 
     ci_cons_bounds_right: 0.087 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 90 percent done.
MCHR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.059497e-01	ci left: 1.139852e-01	ci right 1.268368e-01	k: 1203	n:10000
Cons ci ratio: 2.362105e-01	ci left: 2.362888e-02	ci right 3.005075e-02	k: 267	n:10000
KS ci ratio: 3.769094e-01	ci left: 8.686342e-03	ci right 1.280614e-02	k: 106	n:10000
MCHR1   10000 perm   1 sec   (7010 perm/sec)   p_kst 1.060000e-02   p_cons 2.670000e-02   p_joint 1.203000e-01

Joint ci ratio: 8.515536e-02	ci left: 9.170598e-02	ci right 9.991197e-02	k: 1915	n:20000
Cons ci ratio: 1.686536e-01	ci left: 2.407833e-02	ci right 2.856082e-02	k: 525	n:20000
KS ci ratio: 2.717025e-01	ci left: 8.900643e-03	ci right 1.174443e-02	k: 205	n:20000
MCHR1   20000 perm   3 sec   (6401 perm/sec)   p_kst 1.025000e-02   p_cons 2.625000e-02   p_joint 9.575000e-02

Joint ci ratio: 6.261915e-02	ci left: 1.119039e-01	ci right 1.191708e-01	k: 3465	n:30000
Cons ci ratio: 1.395331e-01	ci left: 2.384218e-02	ci right 2.745048e-02	k: 768	n:30000
KS ci ratio: 2.200541e-01	ci left: 9.314470e-03	ci right 1.164846e-02	k: 313	n:30000
MCHR1   30000 perm   5 sec   (6129 perm/sec)   p_kst 1.043333e-02   p_cons 2.560000e-02   p_joint 1.155000e-01

Joint ci ratio: 6.574308e-02	ci left: 7.893520e-02	ci right 8.432572e-02	k: 3264	n:40000
Cons ci ratio: 1.217156e-01	ci left: 2.373461e-02	ci right 2.683483e-02	k: 1010	n:40000
KS ci ratio: 1.928357e-01	ci left: 9.238511e-03	ci right 1.123355e-02	k: 408	n:40000
MCHR1   40000 perm   7 sec   (5958 perm/sec)   p_kst 1.020000e-02   p_cons 2.525000e-02   p_joint 8.160000e-02

Joint ci ratio: 5.987329e-02	ci left: 7.659099e-02	ci right 8.133803e-02	k: 3947	n:50000
Cons ci ratio: 1.081114e-01	ci left: 2.423323e-02	ci right 2.702222e-02	k: 1280	n:50000
KS ci ratio: 1.721804e-01	ci left: 9.376099e-03	ci right 1.116145e-02	k: 512	n:50000
MCHR1   50000 perm   9 sec   (5806 perm/sec)   p_kst 1.024000e-02   p_cons 2.560000e-02   p_joint 7.894000e-02

Joint ci ratio: 3.016687e-02	ci left: 2.162929e-01	ci right 2.229343e-01	k: 13176	n:60000
Cons ci ratio: 9.926334e-02	ci left: 2.407441e-02	ci right 2.660512e-02	k: 1519	n:60000
KS ci ratio: 1.546108e-01	ci left: 9.779948e-03	ci right 1.143457e-02	k: 635	n:60000
MCHR1   60000 perm   11 sec   (5675 perm/sec)   p_kst 1.058333e-02   p_cons 2.531667e-02   p_joint 2.196000e-01

Joint ci ratio: 2.491983e-02	ci left: 2.579059e-01	ci right 2.644282e-01	k: 18281	n:70000
Cons ci ratio: 9.222969e-02	ci left: 2.399565e-02	ci right 2.632966e-02	k: 1760	n:70000
KS ci ratio: 1.451320e-01	ci left: 9.565265e-03	ci right 1.107574e-02	k: 721	n:70000
MCHR1   70000 perm   13 sec   (5544 perm/sec)   p_kst 1.030000e-02   p_cons 2.514286e-02   p_joint 2.611571e-01

Joint ci ratio: 2.326570e-02	ci left: 2.588557e-01	ci right 2.649615e-01	k: 20952	n:80000
Cons ci ratio: 8.672881e-02	ci left: 2.381901e-02	ci right 2.599063e-02	k: 1991	n:80000
KS ci ratio: 1.335000e-01	ci left: 9.950239e-03	ci right 1.138558e-02	k: 852	n:80000
MCHR1   80000 perm   15 sec   (5427 perm/sec)   p_kst 1.065000e-02   p_cons 2.488750e-02   p_joint 2.619000e-01

Joint ci ratio: 3.589829e-02	ci left: 1.148849e-01	ci right 1.190954e-01	k: 10528	n:90000
Cons ci ratio: 8.158228e-02	ci left: 2.398978e-02	ci right 2.604099e-02	k: 2250	n:90000
KS ci ratio: 1.267102e-01	ci left: 9.855089e-03	ci right 1.119896e-02	k: 946	n:90000
MCHR1   90000 perm   17 sec   (5315 perm/sec)   p_kst 1.051111e-02   p_cons 2.500000e-02   p_joint 1.169778e-01

Joint ci ratio: 3.873045e-02	ci left: 9.111752e-02	ci right 9.472613e-02	k: 9291	n:100000
Cons ci ratio: 7.738169e-02	ci left: 2.405095e-02	ci right 2.599673e-02	k: 2501	n:100000
KS ci ratio: 1.203364e-01	ci left: 9.867769e-03	ci right 1.114086e-02	k: 1049	n:100000
MCHR1   100000 perm   19 sec   (5225 perm/sec)   p_kst 1.049000e-02   p_cons 2.501000e-02   p_joint 9.291000e-02

Joint ci ratio: 3.435580e-02	ci left: 1.040063e-01	ci right 1.076509e-01	k: 11640	n:110000
Cons ci ratio: 7.412940e-02	ci left: 2.387113e-02	ci right 2.571768e-02	k: 2726	n:110000
KS ci ratio: 1.162200e-01	ci left: 9.641103e-03	ci right 1.083948e-02	k: 1125	n:110000
MCHR1   110000 perm   21 sec   (5131 perm/sec)   p_kst 1.022727e-02   p_cons 2.478182e-02   p_joint 1.058182e-01

Joint ci ratio: 3.629561e-02	ci left: 8.698147e-02	ci right 9.020511e-02	k: 10630	n:120000
Cons ci ratio: 7.080177e-02	ci left: 2.402571e-02	ci right 2.579735e-02	k: 2988	n:120000
KS ci ratio: 1.110151e-01	ci left: 9.712126e-03	ci right 1.086172e-02	k: 1233	n:120000
MCHR1   120000 perm   24 sec   (5044 perm/sec)   p_kst 1.027500e-02   p_cons 2.490000e-02   p_joint 8.858333e-02

Joint ci ratio: 3.648340e-02	ci left: 8.007161e-02	ci right 8.305478e-02	k: 10602	n:130000
Cons ci ratio: 6.787473e-02	ci left: 2.416564e-02	ci right 2.587102e-02	k: 3251	n:130000
KS ci ratio: 1.069770e-01	ci left: 9.675879e-03	ci right 1.077690e-02	k: 1328	n:130000
MCHR1   130000 perm   26 sec   (4953 perm/sec)   p_kst 1.021538e-02   p_cons 2.500769e-02   p_joint 8.155385e-02

Joint ci ratio: 3.345373e-02	ci left: 8.781822e-02	ci right 9.081310e-02	k: 12503	n:140000
Cons ci ratio: 6.534027e-02	ci left: 2.424469e-02	ci right 2.588935e-02	k: 3508	n:140000
KS ci ratio: 1.032765e-01	ci left: 9.659382e-03	ci right 1.071820e-02	k: 1425	n:140000
MCHR1   140000 perm   29 sec   (4860 perm/sec)   p_kst 1.017857e-02   p_cons 2.505714e-02   p_joint 8.930714e-02

Joint ci ratio: 3.392081e-02	ci left: 8.036493e-02	ci right 8.314460e-02	k: 12262	n:150000
Cons ci ratio: 6.321655e-02	ci left: 2.420264e-02	ci right 2.578912e-02	k: 3748	n:150000
KS ci ratio: 9.973695e-02	ci left: 9.684664e-03	ci right 1.070773e-02	k: 1528	n:150000
MCHR1   150000 perm   31 sec   (4770 perm/sec)   p_kst 1.018667e-02   p_cons 2.498667e-02   p_joint 8.174667e-02

Outputting figure to mutsig2_images.part000000000103/MCHR1.2_1277_150000_0.010187_0.024987_0.081747.png
                gene_name: MCHR1
               theta_stop: 0.100 
                    nperm: 150000 
                     p_ks: 0.010 
        ci_ks_bounds_left: 0.0097 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.025 
      ci_cons_bounds_left: 0.024 
     ci_cons_bounds_right: 0.026 
                  p_joint: 0.082 
     ci_joint_bounds_left: 0.080 
    ci_joint_bounds_right: 0.083 

Current progress: 92 percent done.
MCL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.524022e-02	ci left: 6.978692e-01	ci right 7.158101e-01	k: 7069	n:10000
KS ci ratio: 5.359736e-02	ci left: 3.390568e-01	ci right 3.578316e-01	k: 3484	n:10000
MCL1   10000 perm   2 sec   (5627 perm/sec)   p_kst 3.484000e-01   p_cons 7.069000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000103/MCL1.2_1076_10000_0.3484_0.7069_1.png
                gene_name: MCL1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
MDM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.549612e-02	ci left: 5.395849e-01	ci right 5.591863e-01	k: 5494	n:10000
Cons ci ratio: 9.699204e-02	ci left: 1.335486e-01	ci right 1.472617e-01	k: 1403	n:10000
KS ci ratio: 1.666896e-02	ci left: 8.396916e-01	ci right 8.539057e-01	k: 8469	n:10000
MDM2   10000 perm   1 sec   (7035 perm/sec)   p_kst 8.469000e-01   p_cons 1.403000e-01   p_joint 5.494000e-01

Outputting figure to mutsig2_images.part000000000103/MDM2.2_1538_10000_0.8469_0.1403_0.5494.png
                gene_name: MDM2
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 96 percent done.
ME1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.877102e-02	ci left: 2.987602e-01	ci right 3.169519e-01	k: 3078	n:10000
KS ci ratio: 7.627750e-03	ci left: 9.597417e-01	ci right 9.671851e-01	k: 9636	n:10000
ME1   10000 perm   1 sec   (6712 perm/sec)   p_kst 9.636000e-01   p_cons 3.078000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000103/ME1.2_1775_10000_0.9636_0.3078_1.png
                gene_name: ME1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
ME3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.824171e-01	ci left: 1.622887e-02	ci right 2.165650e-02	k: 188	n:10000
Cons ci ratio: 3.520321e-02	ci left: 5.436920e-01	ci right 5.632768e-01	k: 5535	n:10000
KS ci ratio: 3.787022e-01	ci left: 8.595766e-03	ci right 1.269681e-02	k: 105	n:10000
ME3   10000 perm   2 sec   (6572 perm/sec)   p_kst 1.050000e-02   p_cons 5.535000e-01   p_joint 1.880000e-02

Joint ci ratio: 1.973228e-01	ci left: 1.743844e-02	ci right 2.130309e-02	k: 386	n:20000
Cons ci ratio: 2.398780e-02	ci left: 5.648572e-01	ci right 5.786220e-01	k: 11435	n:20000
KS ci ratio: 2.665217e-01	ci left: 9.273887e-03	ci right 1.217100e-02	k: 213	n:20000
ME3   20000 perm   3 sec   (5935 perm/sec)   p_kst 1.065000e-02   p_cons 5.717500e-01   p_joint 1.930000e-02

Joint ci ratio: 1.640943e-01	ci left: 1.713322e-02	ci right 2.022766e-02	k: 559	n:30000
Cons ci ratio: 2.055487e-02	ci left: 5.423137e-01	ci right 5.536103e-01	k: 16439	n:30000
KS ci ratio: 2.222095e-01	ci left: 9.125451e-03	ci right 1.143753e-02	k: 307	n:30000
ME3   30000 perm   5 sec   (5645 perm/sec)   p_kst 1.023333e-02   p_cons 5.479667e-01   p_joint 1.863333e-02

Joint ci ratio: 1.434540e-01	ci left: 1.700905e-02	ci right 1.966153e-02	k: 732	n:40000
Cons ci ratio: 1.780812e-02	ci left: 5.428817e-01	ci right 5.526614e-01	k: 21911	n:40000
KS ci ratio: 1.933138e-01	ci left: 9.190906e-03	ci right 1.118117e-02	k: 406	n:40000
ME3   40000 perm   7 sec   (5458 perm/sec)   p_kst 1.015000e-02   p_cons 5.477750e-01   p_joint 1.830000e-02

Joint ci ratio: 1.292649e-01	ci left: 1.689143e-02	ci right 1.924500e-02	k: 902	n:50000
Cons ci ratio: 1.595375e-02	ci left: 5.426042e-01	ci right 5.513504e-01	k: 27349	n:50000
KS ci ratio: 1.746037e-01	ci left: 9.108141e-03	ci right 1.086945e-02	k: 498	n:50000
ME3   50000 perm   9 sec   (5295 perm/sec)   p_kst 9.960000e-03   p_cons 5.469800e-01   p_joint 1.804000e-02

Joint ci ratio: 1.169407e-01	ci left: 1.730729e-02	ci right 1.947299e-02	k: 1102	n:60000
Cons ci ratio: 1.462451e-02	ci left: 5.409217e-01	ci right 5.489073e-01	k: 32695	n:60000
KS ci ratio: 1.581682e-01	ci left: 9.331373e-03	ci right 1.094987e-02	k: 607	n:60000
ME3   60000 perm   12 sec   (5177 perm/sec)   p_kst 1.011667e-02   p_cons 5.449167e-01   p_joint 1.836667e-02

Joint ci ratio: 1.088203e-01	ci left: 1.720871e-02	ci right 1.920294e-02	k: 1273	n:70000
Cons ci ratio: 1.351756e-02	ci left: 5.420311e-01	ci right 5.494222e-01	k: 38201	n:70000
KS ci ratio: 1.474184e-01	ci left: 9.262376e-03	ci right 1.075009e-02	k: 699	n:70000
ME3   70000 perm   14 sec   (5071 perm/sec)   p_kst 9.985714e-03   p_cons 5.457286e-01   p_joint 1.818571e-02

Joint ci ratio: 1.011571e-01	ci left: 1.749216e-02	ci right 1.936800e-02	k: 1473	n:80000
Cons ci ratio: 1.265867e-02	ci left: 5.417166e-01	ci right 5.486301e-01	k: 43614	n:80000
KS ci ratio: 1.381593e-01	ci left: 9.273797e-03	ci right 1.066209e-02	k: 796	n:80000
ME3   80000 perm   16 sec   (4987 perm/sec)   p_kst 9.950000e-03   p_cons 5.451750e-01   p_joint 1.841250e-02

Joint ci ratio: 9.546726e-02	ci left: 1.751027e-02	ci right 1.927652e-02	k: 1654	n:90000
Cons ci ratio: 1.193707e-02	ci left: 5.418175e-01	ci right 5.483351e-01	k: 49057	n:90000
KS ci ratio: 1.308953e-01	ci left: 9.220454e-03	ci right 1.052254e-02	k: 887	n:90000
ME3   90000 perm   19 sec   (4797 perm/sec)   p_kst 9.855556e-03   p_cons 5.450778e-01   p_joint 1.837778e-02

Joint ci ratio: 9.046528e-02	ci left: 1.759559e-02	ci right 1.927251e-02	k: 1842	n:100000
Cons ci ratio: 1.133703e-02	ci left: 5.414371e-01	ci right 5.476203e-01	k: 54453	n:100000
KS ci ratio: 1.239669e-01	ci left: 9.285927e-03	ci right 1.052275e-02	k: 989	n:100000
ME3   100000 perm   21 sec   (4715 perm/sec)   p_kst 9.890000e-03   p_cons 5.445300e-01   p_joint 1.842000e-02

Joint ci ratio: 8.624013e-02	ci left: 1.764067e-02	ci right 1.923941e-02	k: 2027	n:110000
Cons ci ratio: 1.081882e-02	ci left: 5.411511e-01	ci right 5.470466e-01	k: 59851	n:110000
KS ci ratio: 1.182527e-01	ci left: 9.305684e-03	ci right 1.048401e-02	k: 1087	n:110000
ME3   110000 perm   24 sec   (4628 perm/sec)   p_kst 9.881818e-03   p_cons 5.441000e-01   p_joint 1.842727e-02

Joint ci ratio: 8.244279e-02	ci left: 1.772875e-02	ci right 1.926132e-02	k: 2218	n:120000
Cons ci ratio: 1.034590e-02	ci left: 5.418688e-01	ci right 5.475124e-01	k: 65363	n:120000
KS ci ratio: 1.134556e-01	ci left: 9.290843e-03	ci right 1.041637e-02	k: 1181	n:120000
ME3   120000 perm   26 sec   (4554 perm/sec)   p_kst 9.841667e-03   p_cons 5.446917e-01   p_joint 1.848333e-02

Joint ci ratio: 7.934170e-02	ci left: 1.769898e-02	ci right 1.916876e-02	k: 2395	n:130000
Cons ci ratio: 9.942632e-03	ci left: 5.418496e-01	ci right 5.472715e-01	k: 70793	n:130000
KS ci ratio: 1.089403e-01	ci left: 9.324011e-03	ci right 1.040571e-02	k: 1281	n:130000
ME3   130000 perm   29 sec   (4489 perm/sec)   p_kst 9.853846e-03   p_cons 5.445615e-01   p_joint 1.842308e-02

Joint ci ratio: 7.641499e-02	ci left: 1.774449e-02	ci right 1.916127e-02	k: 2582	n:140000
Cons ci ratio: 9.593337e-03	ci left: 5.413080e-01	ci right 5.465331e-01	k: 76149	n:140000
KS ci ratio: 1.050011e-01	ci left: 9.339287e-03	ci right 1.038116e-02	k: 1379	n:140000
ME3   140000 perm   32 sec   (4430 perm/sec)   p_kst 9.850000e-03   p_cons 5.439214e-01   p_joint 1.844286e-02

Joint ci ratio: 7.407656e-02	ci left: 1.764733e-02	ci right 1.901138e-02	k: 2748	n:150000
Cons ci ratio: 9.265088e-03	ci left: 5.415554e-01	ci right 5.466029e-01	k: 81612	n:150000
KS ci ratio: 1.011843e-01	ci left: 9.405132e-03	ci right 1.041395e-02	k: 1485	n:150000
ME3   150000 perm   34 sec   (4363 perm/sec)   p_kst 9.900000e-03   p_cons 5.440800e-01   p_joint 1.832000e-02

Joint ci ratio: 7.189018e-02	ci left: 1.758746e-02	ci right 1.890508e-02	k: 2918	n:160000
Cons ci ratio: 8.962280e-03	ci left: 5.421121e-01	ci right 5.469988e-01	k: 87129	n:160000
KS ci ratio: 9.838173e-02	ci left: 9.341383e-03	ci right 1.031400e-02	k: 1571	n:160000
ME3   160000 perm   37 sec   (4296 perm/sec)   p_kst 9.818750e-03   p_cons 5.445562e-01   p_joint 1.823750e-02

Outputting figure to mutsig2_images.part000000000103/ME3.2_1871_160000_0.0098187_0.54456_0.018238.png
                gene_name: ME3
               theta_stop: 0.098 
                    nperm: 160000 
                     p_ks: 0.0098 
        ci_ks_bounds_left: 0.0093 
       ci_ks_bounds_right: 0.010 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.018 
     ci_joint_bounds_left: 0.018 
    ci_joint_bounds_right: 0.019 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000103
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 103 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1558>
Subject: Job 8004262: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1558>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000104> was used as the working directory.
Started at Sun Nov 11 17:03:39 2012
Results reported at Sun Nov 11 20:28:52 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000104.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000104.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 104  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000104.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  20197.98 sec.
    Max Memory :      4801 MB
    Max Swap   :      7110 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
104
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 104
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 104: processing genes 9319 - 9409
Calculating significance of each gene.
Using projection method.
9319	MED12L	9.897672e-01
9320	MED13	9.507668e-01
9321	MED13L	1
9322	MED14	9.842307e-01
9323	MED15	9.253383e-01
9324	MED16	1
9325	MED17	8.184135e-02
9326	MED18	1.465416e-01
9327	MED19	1
9328	MED20	1
9329	MED21	1
9330	MED22	3.983195e-01
9331	MED23	7.504791e-01
9332	MED24	8.694221e-01
9333	MED25	5.817184e-01
9334	MED26	8.766449e-01
9335	MED27	1
9336	MED28	6.463152e-03
9337	MED29	1
9338	MED30	1
9339	MED31	1
9340	MED4	1
9341	MED6	6.331564e-01
9342	MED7	1.182986e-01
9343	MED8	1
9344	MED9	1
9345	MEF2A	2.466283e-01
9346	MEF2B	1
9347	MEF2C	1.960472e-01
9348	MEF2D	2.590529e-01
9349	MEFV	2.866296e-01
9350	MEGF10	9.124687e-01
9351	MEGF11	8.315757e-01
9352	MEGF6	6.002129e-01
9353	MEGF8	7.755816e-01
9354	MEGF9	8.440211e-01
9355	MEI1	9.537925e-01
9356	MEIG1	1
9357	MEIS1	3.677712e-01
9358	MEIS2	8.458388e-01
9359	MEIS3	1
9360	MELK	1
9361	MEMO1	4.334404e-02
9362	MEN1	4.117015e-01
9363	MEOX1	1
9364	MEOX2	1.445854e-01
9365	MEP1A	6.024640e-01
9366	MEP1B	2.560241e-01
9367	MEPCE	1
9368	MEPE	1.333022e-01
9369	MERTK	8.685807e-01
9370	MESDC1	1
9371	MESDC2	1
9372	MESP2	6.095932e-01
9373	MEST	1
9374	MET	9.897311e-01
9375	METAP1	3.152290e-01
9376	METAP2	4.620295e-01
9377	METRN	1
9378	METRNL	1
9379	METT10D	3.432480e-01
9380	METT11D1	4.766637e-01
9381	METT5D1	1
9382	METTL1	1
9383	METTL10	1
9384	METTL11A	1
9385	METTL12	5.301796e-01
9386	METTL13	1
9387	METTL14	8.509823e-01
9388	METTL2A	1
9389	METTL2B	7.267786e-01
9390	METTL3	9.056910e-01
9391	METTL4	7.471999e-01
9392	METTL5	1
9393	METTL6	1.550484e-01
9394	METTL7A	6.796310e-01
9395	METTL7B	1.865673e-01
9396	METTL8	4.784118e-02
9397	METTL9	1
9398	MEX3A	3.067464e-01
9399	MEX3B	1
9400	MEX3C	1
9401	MEX3D	5.339915e-01
9402	MFAP1	8.566915e-01
9403	MFAP2	4.837186e-01
9404	MFAP3	1
9405	MFAP3L	1
9406	MFAP4	5.808603e-01
9407	MFAP5	3.027355e-01
9408	MFF	1
9409	MFGE8	1
Done

Running MutSig 2:
Scatter job 104: processing genes 9319 - 9409
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
MED12L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.769452e-02	ci left: 5.096532e-01	ci right 5.293355e-01	k: 5195	n:10000
Cons ci ratio: 7.435137e-02	ci left: 2.093488e-01	ci right 2.256161e-01	k: 2174	n:10000
KS ci ratio: 3.209660e-02	ci left: 5.889150e-01	ci right 6.082275e-01	k: 5986	n:10000
MED12L   10000 perm   3 sec   (3185 perm/sec)   p_kst 5.986000e-01   p_cons 2.174000e-01   p_joint 5.195000e-01

Outputting figure to mutsig2_images.part000000000104/MED12L.14_6610_10000_0.5986_0.2174_0.5195.png
                gene_name: MED12L
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 2 percent done.
MEGF8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.885856e-02	ci left: 4.944505e-01	ci right 5.141470e-01	k: 5043	n:10000
Cons ci ratio: 8.760919e-02	ci left: 1.594429e-01	ci right 1.741517e-01	k: 1667	n:10000
KS ci ratio: 1.489344e-02	ci left: 8.672346e-01	ci right 8.803468e-01	k: 8739	n:10000
MEGF8   10000 perm   3 sec   (3080 perm/sec)   p_kst 8.739000e-01   p_cons 1.667000e-01   p_joint 5.043000e-01

Outputting figure to mutsig2_images.part000000000104/MEGF8.8_8501_10000_0.8739_0.1667_0.5043.png
                gene_name: MEGF8
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 5 percent done.
MED17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.227754e-02	ci left: 4.523904e-01	ci right 4.720316e-01	k: 4622	n:10000
Cons ci ratio: 6.135045e-02	ci left: 2.809205e-01	ci right 2.988021e-01	k: 2898	n:10000
KS ci ratio: 4.954487e-02	ci left: 3.753480e-01	ci right 3.945190e-01	k: 3849	n:10000
MED17   10000 perm   2 sec   (5317 perm/sec)   p_kst 3.849000e-01   p_cons 2.898000e-01   p_joint 4.622000e-01

Outputting figure to mutsig2_images.part000000000104/MED17.6_2004_10000_0.3849_0.2898_0.4622.png
                gene_name: MED17
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 7 percent done.
MEP1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.353717e-02	ci left: 8.872890e-01	ci right 8.994808e-01	k: 8935	n:10000
Cons ci ratio: 5.120650e-02	ci left: 3.599296e-01	ci right 3.789466e-01	k: 3694	n:10000
KS ci ratio: 2.955702e-02	ci left: 6.279891e-01	ci right 6.469308e-01	k: 6375	n:10000
MEP1A   10000 perm   2 sec   (5101 perm/sec)   p_kst 6.375000e-01   p_cons 3.694000e-01   p_joint 8.935000e-01

Outputting figure to mutsig2_images.part000000000104/MEP1A.6_2297_10000_0.6375_0.3694_0.8935.png
                gene_name: MEP1A
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 10 percent done.
MED13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.032889e-02	ci left: 6.159285e-01	ci right 6.349984e-01	k: 6255	n:10000
Cons ci ratio: 4.513363e-02	ci left: 4.201686e-01	ci right 4.396723e-01	k: 4299	n:10000
KS ci ratio: 4.528124e-02	ci left: 4.185735e-01	ci right 4.380683e-01	k: 4283	n:10000
MED13   10000 perm   3 sec   (3604 perm/sec)   p_kst 4.283000e-01   p_cons 4.299000e-01   p_joint 6.255000e-01

Outputting figure to mutsig2_images.part000000000104/MED13.5_6645_10000_0.4283_0.4299_0.6255.png
                gene_name: MED13
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.63 

Current progress: 12 percent done.
MED13L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.610238e-02	ci left: 5.311724e-01	ci right 5.508037e-01	k: 5410	n:10000
KS ci ratio: 8.952882e-03	ci left: 9.460656e-01	ci right 9.546696e-01	k: 9505	n:10000
MED13L   10000 perm   3 sec   (3655 perm/sec)   p_kst 9.505000e-01   p_cons 5.410000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000104/MED13L.5_6757_10000_0.9505_0.541_1.png
                gene_name: MED13L
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 14 percent done.
MEFV
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.379690e-02	ci left: 7.218893e-01	ci right 7.393761e-01	k: 7307	n:10000
Cons ci ratio: 7.070558e-02	ci left: 2.267179e-01	ci right 2.434367e-01	k: 2350	n:10000
KS ci ratio: 9.066260e-03	ci left: 9.448175e-01	ci right 9.535185e-01	k: 9493	n:10000
MEFV   10000 perm   2 sec   (5372 perm/sec)   p_kst 9.493000e-01   p_cons 2.350000e-01   p_joint 7.307000e-01

Outputting figure to mutsig2_images.part000000000104/MEFV.5_2386_10000_0.9493_0.235_0.7307.png
                gene_name: MEFV
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 17 percent done.
METTL13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.894319e-02	ci left: 2.358052e-01	ci right 2.527440e-01	k: 2442	n:10000
Cons ci ratio: 1.762269e-02	ci left: 8.244242e-01	ci right 8.391819e-01	k: 8319	n:10000
KS ci ratio: 1.016296e-01	ci left: 1.228802e-01	ci right 1.361365e-01	k: 1294	n:10000
METTL13   10000 perm   2 sec   (5684 perm/sec)   p_kst 1.294000e-01   p_cons 8.319000e-01   p_joint 2.442000e-01

Joint ci ratio: 4.617429e-02	ci left: 2.587442e-01	ci right 2.710242e-01	k: 5297	n:20000
Cons ci ratio: 1.241379e-02	ci left: 8.277070e-01	ci right 8.380960e-01	k: 16659	n:20000
KS ci ratio: 6.759391e-02	ci left: 1.390627e-01	ci right 1.488411e-01	k: 2878	n:20000
METTL13   20000 perm   4 sec   (4961 perm/sec)   p_kst 1.439000e-01   p_cons 8.329500e-01   p_joint 2.648500e-01

Outputting figure to mutsig2_images.part000000000104/METTL13.5_2132_20000_0.1439_0.83295_0.26485.png
                gene_name: METTL13
               theta_stop: 0.068 
                    nperm: 20000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 19 percent done.
MED23
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.704001e-02	ci left: 8.337856e-01	ci right 8.482152e-01	k: 8411	n:10000
KS ci ratio: 2.029037e-02	ci left: 7.805653e-01	ci right 7.966662e-01	k: 7887	n:10000
MED23   10000 perm   2 sec   (4616 perm/sec)   p_kst 7.887000e-01   p_cons 8.411000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000104/MED23.4_4252_10000_0.7887_0.8411_1.png
                gene_name: MED23
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 21 percent done.
MED24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.703829e-02	ci left: 3.115552e-01	ci right 3.299493e-01	k: 3207	n:10000
KS ci ratio: 2.119438e-02	ci left: 7.654710e-01	ci right 7.819693e-01	k: 7738	n:10000
MED24   10000 perm   2 sec   (5053 perm/sec)   p_kst 7.738000e-01   p_cons 3.207000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000104/MED24.4_3070_10000_0.7738_0.3207_1.png
                gene_name: MED24
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 24 percent done.
MED28
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.996421e-02	ci left: 2.903338e-01	ci right 3.083832e-01	k: 2993	n:10000
Cons ci ratio: 3.541734e-02	ci left: 5.406868e-01	ci right 5.602838e-01	k: 5505	n:10000
KS ci ratio: 6.870133e-02	ci left: 2.370897e-01	ci right 2.540587e-01	k: 2455	n:10000
MED28   10000 perm   2 sec   (6498 perm/sec)   p_kst 2.455000e-01   p_cons 5.505000e-01   p_joint 2.993000e-01

Outputting figure to mutsig2_images.part000000000104/MED28.4_553_10000_0.2455_0.5505_0.2993.png
                gene_name: MED28
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 26 percent done.
MEF2C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.136535e-02	ci left: 2.808214e-01	ci right 2.987012e-01	k: 2897	n:10000
KS ci ratio: 1.484613e-02	ci left: 8.679499e-01	ci right 8.810311e-01	k: 8746	n:10000
MEF2C   10000 perm   2 sec   (5897 perm/sec)   p_kst 8.746000e-01   p_cons 2.897000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000104/MEF2C.4_1604_10000_0.8746_0.2897_1.png
                gene_name: MEF2C
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 29 percent done.
MEGF6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.661111e-02	ci left: 8.406084e-01	ci right 8.547884e-01	k: 8478	n:10000
Cons ci ratio: 7.254263e-02	ci left: 2.177347e-01	ci right 2.342252e-01	k: 2259	n:10000
KS ci ratio: 1.619733e-02	ci left: 8.471301e-01	ci right 8.610629e-01	k: 8542	n:10000
MEGF6   10000 perm   2 sec   (4318 perm/sec)   p_kst 8.542000e-01   p_cons 2.259000e-01   p_joint 8.478000e-01

Outputting figure to mutsig2_images.part000000000104/MEGF6.4_4774_10000_0.8542_0.2259_0.8478.png
                gene_name: MEGF6
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 31 percent done.
MEI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.369703e-01	ci left: 7.049285e-02	ci right 8.095591e-02	k: 756	n:10000
Cons ci ratio: 2.138192e-02	ci left: 7.623325e-01	ci right 7.789096e-01	k: 7707	n:10000
KS ci ratio: 5.132010e-01	ci left: 4.319899e-03	ci right 7.378784e-03	k: 57	n:10000
MEI1   10000 perm   2 sec   (4740 perm/sec)   p_kst 5.700000e-03   p_cons 7.707000e-01   p_joint 7.560000e-02

Joint ci ratio: 2.238557e-01	ci left: 1.340842e-02	ci right 1.683467e-02	k: 301	n:20000
Cons ci ratio: 1.517701e-02	ci left: 7.634480e-01	ci right 7.751736e-01	k: 15387	n:20000
KS ci ratio: 3.991121e-01	ci left: 3.844683e-03	ci right 5.803559e-03	k: 95	n:20000
MEI1   20000 perm   5 sec   (4160 perm/sec)   p_kst 4.750000e-03   p_cons 7.693500e-01   p_joint 1.505000e-02

Joint ci ratio: 2.083036e-01	ci left: 1.045075e-02	ci right 1.291184e-02	k: 349	n:30000
Cons ci ratio: 1.242630e-02	ci left: 7.635503e-01	ci right 7.731311e-01	k: 23051	n:30000
KS ci ratio: 3.366144e-01	ci left: 3.743736e-03	ci right 5.287973e-03	k: 134	n:30000
MEI1   30000 perm   8 sec   (3959 perm/sec)   p_kst 4.466667e-03   p_cons 7.683667e-01   p_joint 1.163333e-02

Joint ci ratio: 9.095482e-02	ci left: 4.235314e-02	ci right 4.641334e-02	k: 1774	n:40000
Cons ci ratio: 1.082546e-02	ci left: 7.620708e-01	ci right 7.703905e-01	k: 30650	n:40000
KS ci ratio: 2.672446e-01	ci left: 4.635393e-03	ci right 6.087840e-03	k: 213	n:40000
MEI1   40000 perm   10 sec   (3856 perm/sec)   p_kst 5.325000e-03   p_cons 7.662500e-01   p_joint 4.435000e-02

Joint ci ratio: 1.001315e-01	ci left: 2.824890e-02	ci right 3.124603e-02	k: 1486	n:50000
Cons ci ratio: 9.661777e-03	ci left: 7.632892e-01	ci right 7.707197e-01	k: 38351	n:50000
KS ci ratio: 2.370352e-01	ci left: 4.795300e-03	ci right 6.103127e-03	k: 271	n:50000
MEI1   50000 perm   13 sec   (3753 perm/sec)   p_kst 5.420000e-03   p_cons 7.670200e-01   p_joint 2.972000e-02

Joint ci ratio: 9.926334e-02	ci left: 2.407441e-02	ci right 2.660512e-02	k: 1519	n:60000
Cons ci ratio: 8.822916e-03	ci left: 7.634957e-01	ci right 7.702784e-01	k: 46014	n:60000
KS ci ratio: 2.161832e-01	ci left: 4.860829e-03	ci right 6.054440e-03	k: 326	n:60000
MEI1   60000 perm   16 sec   (3679 perm/sec)   p_kst 5.433333e-03   p_cons 7.669000e-01   p_joint 2.531667e-02

Joint ci ratio: 1.005002e-01	ci left: 2.020135e-02	ci right 2.235287e-02	k: 1488	n:70000
Cons ci ratio: 8.184751e-03	ci left: 7.630321e-01	ci right 7.693172e-01	k: 53633	n:70000
KS ci ratio: 2.018836e-01	ci left: 4.816266e-03	ci right 5.911065e-03	k: 374	n:70000
MEI1   70000 perm   19 sec   (3602 perm/sec)   p_kst 5.342857e-03   p_cons 7.661857e-01   p_joint 2.125714e-02

Joint ci ratio: 8.406194e-02	ci left: 2.534897e-02	ci right 2.758555e-02	k: 2116	n:80000
Cons ci ratio: 7.645678e-03	ci left: 7.637283e-01	ci right 7.696024e-01	k: 61334	n:80000
KS ci ratio: 1.938111e-01	ci left: 4.594371e-03	ci right 5.592039e-03	k: 406	n:80000
MEI1   80000 perm   23 sec   (3528 perm/sec)   p_kst 5.075000e-03   p_cons 7.666750e-01   p_joint 2.645000e-02

Joint ci ratio: 6.976658e-02	ci left: 3.270531e-02	ci right 3.508041e-02	k: 3049	n:90000
Cons ci ratio: 7.209926e-03	ci left: 7.638224e-01	ci right 7.693604e-01	k: 68994	n:90000
KS ci ratio: 1.809237e-01	ci left: 4.719339e-03	ci right 5.668539e-03	k: 466	n:90000
MEI1   90000 perm   26 sec   (3470 perm/sec)   p_kst 5.177778e-03   p_cons 7.666000e-01   p_joint 3.387778e-02

Joint ci ratio: 7.329243e-02	ci left: 2.678977e-02	ci right 2.883774e-02	k: 2780	n:100000
Cons ci ratio: 6.822924e-03	ci left: 7.648590e-01	ci right 7.701054e-01	k: 76749	n:100000
KS ci ratio: 1.722896e-01	ci left: 4.706192e-03	ci right 5.602879e-03	k: 514	n:100000
MEI1   100000 perm   29 sec   (3413 perm/sec)   p_kst 5.140000e-03   p_cons 7.674900e-01   p_joint 2.780000e-02

Joint ci ratio: 7.597818e-02	ci left: 2.272882e-02	ci right 2.453279e-02	k: 2598	n:110000
Cons ci ratio: 6.503232e-03	ci left: 7.651016e-01	ci right 7.701025e-01	k: 84437	n:110000
KS ci ratio: 1.613627e-01	ci left: 4.905638e-03	ci right 5.775302e-03	k: 586	n:110000
MEI1   110000 perm   33 sec   (3352 perm/sec)   p_kst 5.327273e-03   p_cons 7.676091e-01   p_joint 2.361818e-02

Joint ci ratio: 6.972087e-02	ci left: 2.477105e-02	ci right 2.656864e-02	k: 3079	n:120000
Cons ci ratio: 6.224784e-03	ci left: 7.653000e-01	ci right 7.700870e-01	k: 92124	n:120000
KS ci ratio: 1.544160e-01	ci left: 4.929065e-03	ci right 5.761782e-03	k: 640	n:120000
MEI1   120000 perm   36 sec   (3304 perm/sec)   p_kst 5.333333e-03   p_cons 7.677000e-01   p_joint 2.565833e-02

Joint ci ratio: 6.751361e-02	ci left: 2.442286e-02	ci right 2.613687e-02	k: 3285	n:130000
Cons ci ratio: 5.992186e-03	ci left: 7.646999e-01	ci right 7.693035e-01	k: 99711	n:130000
KS ci ratio: 1.494895e-01	ci left: 4.868088e-03	ci right 5.661918e-03	k: 683	n:130000
MEI1   130000 perm   40 sec   (3257 perm/sec)   p_kst 5.253846e-03   p_cons 7.670077e-01   p_joint 2.526923e-02

Joint ci ratio: 6.488649e-02	ci left: 2.458210e-02	ci right 2.623763e-02	k: 3556	n:140000
Cons ci ratio: 5.770301e-03	ci left: 7.650273e-01	ci right 7.694616e-01	k: 107415	n:140000
KS ci ratio: 1.433313e-01	ci left: 4.933255e-03	ci right 5.701738e-03	k: 743	n:140000
MEI1   140000 perm   44 sec   (3200 perm/sec)   p_kst 5.307143e-03   p_cons 7.672500e-01   p_joint 2.540000e-02

Joint ci ratio: 6.305287e-02	ci left: 2.432736e-02	ci right 2.591774e-02	k: 3767	n:150000
Cons ci ratio: 5.580311e-03	ci left: 7.647385e-01	ci right 7.690245e-01	k: 115033	n:150000
KS ci ratio: 1.392765e-01	ci left: 4.887327e-03	ci right 5.625329e-03	k: 787	n:150000
MEI1   150000 perm   48 sec   (3154 perm/sec)   p_kst 5.246667e-03   p_cons 7.668867e-01   p_joint 2.511333e-02

Joint ci ratio: 6.313796e-02	ci left: 2.278172e-02	ci right 2.427312e-02	k: 3763	n:160000
Cons ci ratio: 5.408956e-03	ci left: 7.644191e-01	ci right 7.685712e-01	k: 122640	n:160000
KS ci ratio: 1.342557e-01	ci left: 4.944050e-03	ci right 5.661556e-03	k: 847	n:160000
MEI1   160000 perm   51 sec   (3108 perm/sec)   p_kst 5.293750e-03   p_cons 7.665000e-01   p_joint 2.351875e-02

Joint ci ratio: 6.391587e-02	ci left: 2.095471e-02	ci right 2.234402e-02	k: 3679	n:170000
Cons ci ratio: 5.255735e-03	ci left: 7.639151e-01	ci right 7.679464e-01	k: 130209	n:170000
KS ci ratio: 1.303928e-01	ci left: 4.943293e-03	ci right 5.638448e-03	k: 898	n:170000
MEI1   170000 perm   56 sec   (3061 perm/sec)   p_kst 5.282353e-03   p_cons 7.659353e-01   p_joint 2.164118e-02

Joint ci ratio: 6.198083e-02	ci left: 2.106466e-02	ci right 2.241747e-02	k: 3912	n:180000
Cons ci ratio: 5.142023e-03	ci left: 7.615522e-01	ci right 7.654837e-01	k: 137434	n:180000
KS ci ratio: 1.264444e-01	ci left: 4.975165e-03	ci right 5.652029e-03	k: 955	n:180000
MEI1   180000 perm   60 sec   (3020 perm/sec)   p_kst 5.305556e-03   p_cons 7.635222e-01   p_joint 2.173333e-02

Joint ci ratio: 6.289243e-02	ci left: 1.940629e-02	ci right 2.067158e-02	k: 3806	n:190000
Cons ci ratio: 5.004967e-03	ci left: 7.615985e-01	ci right 7.654250e-01	k: 145068	n:190000
KS ci ratio: 1.220494e-01	ci left: 5.070302e-03	ci right 5.734400e-03	k: 1025	n:190000
MEI1   190000 perm   64 sec   (2976 perm/sec)   p_kst 5.394737e-03   p_cons 7.635158e-01   p_joint 2.003158e-02

Joint ci ratio: 6.369643e-02	ci left: 1.799267e-02	ci right 1.918134e-02	k: 3716	n:200000
Cons ci ratio: 4.877371e-03	ci left: 7.617116e-01	ci right 7.654408e-01	k: 152716	n:200000
KS ci ratio: 1.189037e-01	ci left: 5.083501e-03	ci right 5.730961e-03	k: 1080	n:200000
MEI1   200000 perm   68 sec   (2934 perm/sec)   p_kst 5.400000e-03   p_cons 7.635800e-01   p_joint 1.858000e-02

Joint ci ratio: 6.250368e-02	ci left: 1.781072e-02	ci right 1.896453e-02	k: 3860	n:210000
Cons ci ratio: 4.760254e-03	ci left: 7.617243e-01	ci right 7.653637e-01	k: 160345	n:210000
KS ci ratio: 1.160921e-01	ci left: 5.086394e-03	ci right 5.717853e-03	k: 1133	n:210000
MEI1   210000 perm   72 sec   (2897 perm/sec)   p_kst 5.395238e-03   p_cons 7.635476e-01   p_joint 1.838095e-02

Joint ci ratio: 5.943232e-02	ci left: 1.881428e-02	ci right 1.997116e-02	k: 4265	n:220000
Cons ci ratio: 4.651422e-03	ci left: 7.617186e-01	ci right 7.652744e-01	k: 167970	n:220000
KS ci ratio: 1.127569e-01	ci left: 5.155450e-03	ci right 5.775871e-03	k: 1201	n:220000
MEI1   220000 perm   77 sec   (2859 perm/sec)   p_kst 5.459091e-03   p_cons 7.635000e-01   p_joint 1.938636e-02

Joint ci ratio: 5.617825e-02	ci left: 2.014773e-02	ci right 2.131657e-02	k: 4767	n:230000
Cons ci ratio: 4.550823e-03	ci left: 7.616271e-01	ci right 7.651054e-01	k: 175575	n:230000
KS ci ratio: 1.103065e-01	ci left: 5.159533e-03	ci right 5.766076e-03	k: 1255	n:230000
MEI1   230000 perm   82 sec   (2821 perm/sec)   p_kst 5.456522e-03   p_cons 7.633696e-01   p_joint 2.072609e-02

Joint ci ratio: 5.569858e-02	ci left: 1.965731e-02	ci right 2.078765e-02	k: 4852	n:240000
Cons ci ratio: 4.432636e-03	ci left: 7.634822e-01	ci right 7.668781e-01	k: 183644	n:240000
KS ci ratio: 1.080923e-01	ci left: 5.155301e-03	ci right 5.748406e-03	k: 1307	n:240000
MEI1   240000 perm   86 sec   (2787 perm/sec)   p_kst 5.445833e-03   p_cons 7.651833e-01   p_joint 2.021667e-02

Joint ci ratio: 5.539075e-02	ci left: 1.909570e-02	ci right 2.018748e-02	k: 4909	n:250000
Cons ci ratio: 4.345150e-03	ci left: 7.633449e-01	ci right 7.666729e-01	k: 191253	n:250000
KS ci ratio: 1.062027e-01	ci left: 5.132047e-03	ci right 5.711510e-03	k: 1354	n:250000
MEI1   250000 perm   91 sec   (2754 perm/sec)   p_kst 5.416000e-03   p_cons 7.650120e-01   p_joint 1.963600e-02

Joint ci ratio: 5.640975e-02	ci left: 1.771998e-02	ci right 1.875234e-02	k: 4740	n:260000
Cons ci ratio: 4.261094e-03	ci left: 7.633499e-01	ci right 7.666134e-01	k: 198896	n:260000
KS ci ratio: 1.041849e-01	ci left: 5.133144e-03	ci right 5.701044e-03	k: 1407	n:260000
MEI1   260000 perm   96 sec   (2720 perm/sec)   p_kst 5.411538e-03   p_cons 7.649846e-01   p_joint 1.823077e-02

Joint ci ratio: 5.587979e-02	ci left: 1.739956e-02	ci right 1.840342e-02	k: 4832	n:270000
Cons ci ratio: 4.181520e-03	ci left: 7.633737e-01	ci right 7.665761e-01	k: 206544	n:270000
KS ci ratio: 1.021725e-01	ci left: 5.145084e-03	ci right 5.702650e-03	k: 1463	n:270000
MEI1   270000 perm   100 sec   (2689 perm/sec)   p_kst 5.418519e-03   p_cons 7.649778e-01   p_joint 1.789630e-02

Joint ci ratio: 5.608127e-02	ci left: 1.666881e-02	ci right 1.763408e-02	k: 4801	n:280000
Cons ci ratio: 4.104245e-03	ci left: 7.635718e-01	ci right 7.667156e-01	k: 214241	n:280000
KS ci ratio: 1.002393e-01	ci left: 5.159751e-03	ci right 5.707705e-03	k: 1520	n:280000
MEI1   280000 perm   105 sec   (2656 perm/sec)   p_kst 5.428571e-03   p_cons 7.651464e-01   p_joint 1.714643e-02

Joint ci ratio: 5.622926e-02	ci left: 1.601907e-02	ci right 1.694925e-02	k: 4779	n:290000
Cons ci ratio: 4.031719e-03	ci left: 7.637013e-01	ci right 7.667899e-01	k: 221922	n:290000
KS ci ratio: 9.856890e-02	ci left: 5.156681e-03	ci right 5.694655e-03	k: 1572	n:290000
MEI1   290000 perm   110 sec   (2626 perm/sec)   p_kst 5.420690e-03   p_cons 7.652483e-01   p_joint 1.647931e-02

Outputting figure to mutsig2_images.part000000000104/MEI1.4_3949_290000_0.0054207_0.76525_0.016479.png
                gene_name: MEI1
               theta_stop: 0.099 
                    nperm: 290000 
                     p_ks: 0.0054 
        ci_ks_bounds_left: 0.0052 
       ci_ks_bounds_right: 0.0057 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.016 
     ci_joint_bounds_left: 0.016 
    ci_joint_bounds_right: 0.017 

Current progress: 33 percent done.
MEP1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.646388e-02	ci left: 6.777071e-01	ci right 6.959839e-01	k: 6869	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
MEP1B   10000 perm   2 sec   (5505 perm/sec)   p_kst 1   p_cons 6.869000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000104/MEP1B.4_2166_10000_1_0.6869_1.png
                gene_name: MEP1B
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 36 percent done.
MEPE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.120715e-01	ci left: 1.028590e-01	ci right 1.151698e-01	k: 1089	n:10000
Cons ci ratio: 1.627940e-01	ci left: 5.032338e-02	ci right 5.933816e-02	k: 547	n:10000
KS ci ratio: 8.713937e-02	ci left: 1.609163e-01	ci right 1.756775e-01	k: 1682	n:10000
MEPE   10000 perm   2 sec   (5901 perm/sec)   p_kst 1.682000e-01   p_cons 5.470000e-02   p_joint 1.089000e-01

Joint ci ratio: 1.089404e-01	ci left: 5.747851e-02	ci right 6.414988e-02	k: 1215	n:20000
Cons ci ratio: 1.110461e-01	ci left: 5.538421e-02	ci right 6.194483e-02	k: 1172	n:20000
KS ci ratio: 6.169491e-02	ci left: 1.627434e-01	ci right 1.731534e-01	k: 3358	n:20000
MEPE   20000 perm   4 sec   (5118 perm/sec)   p_kst 1.679000e-01   p_cons 5.860000e-02   p_joint 6.075000e-02

Joint ci ratio: 7.122782e-02	ci left: 8.842441e-02	ci right 9.498825e-02	k: 2750	n:30000
Cons ci ratio: 8.662233e-02	ci left: 6.112543e-02	ci right 6.669272e-02	k: 1916	n:30000
KS ci ratio: 5.059433e-02	ci left: 1.624982e-01	ci right 1.709664e-01	k: 5001	n:30000
MEPE   30000 perm   6 sec   (4818 perm/sec)   p_kst 1.667000e-01   p_cons 6.386667e-02   p_joint 9.166667e-02

Outputting figure to mutsig2_images.part000000000104/MEPE.4_1590_30000_0.1667_0.063867_0.091667.png
                gene_name: MEPE
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.064 
      ci_cons_bounds_left: 0.061 
     ci_cons_bounds_right: 0.067 
                  p_joint: 0.092 
     ci_joint_bounds_left: 0.088 
    ci_joint_bounds_right: 0.095 

Current progress: 38 percent done.
MET
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.631335e-02	ci left: 3.171122e-01	ci right 3.355890e-01	k: 3263	n:10000
Cons ci ratio: 5.810217e-02	ci left: 3.036194e-01	ci right 3.218898e-01	k: 3127	n:10000
KS ci ratio: 7.881696e-02	ci left: 1.904255e-01	ci right 2.061507e-01	k: 1982	n:10000
MET   10000 perm   2 sec   (4443 perm/sec)   p_kst 1.982000e-01   p_cons 3.127000e-01   p_joint 3.263000e-01

Outputting figure to mutsig2_images.part000000000104/MET.4_4307_10000_0.1982_0.3127_0.3263.png
                gene_name: MET
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 40 percent done.
MED14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.170998e-02	ci left: 2.785431e-01	ci right 2.963808e-01	k: 2874	n:10000
Cons ci ratio: 5.915936e-02	ci left: 2.959840e-01	ci right 3.141297e-01	k: 3050	n:10000
KS ci ratio: 6.383989e-02	ci left: 2.649783e-01	ci right 2.825537e-01	k: 2737	n:10000
MED14   10000 perm   2 sec   (4638 perm/sec)   p_kst 2.737000e-01   p_cons 3.050000e-01   p_joint 2.874000e-01

Outputting figure to mutsig2_images.part000000000104/MED14.3_4489_10000_0.2737_0.305_0.2874.png
                gene_name: MED14
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 43 percent done.
MED25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.854893e-02	ci left: 1.298276e-01	ci right 1.433848e-01	k: 1365	n:10000
Cons ci ratio: 4.801080e-02	ci left: 3.902789e-01	ci right 4.095794e-01	k: 3999	n:10000
KS ci ratio: 9.327507e-02	ci left: 1.430542e-01	ci right 1.571503e-01	k: 1500	n:10000
MED25   10000 perm   2 sec   (5558 perm/sec)   p_kst 1.500000e-01   p_cons 3.999000e-01   p_joint 1.365000e-01

Outputting figure to mutsig2_images.part000000000104/MED25.3_2316_10000_0.15_0.3999_0.1365.png
                gene_name: MED25
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 45 percent done.
MEF2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.756368e-02	ci left: 3.947600e-01	ci right 4.140957e-01	k: 4044	n:10000
Cons ci ratio: 6.143997e-02	ci left: 2.803261e-01	ci right 2.981968e-01	k: 2892	n:10000
KS ci ratio: 5.335044e-02	ci left: 3.411431e-01	ci right 3.599440e-01	k: 3505	n:10000
MEF2A   10000 perm   2 sec   (6229 perm/sec)   p_kst 3.505000e-01   p_cons 2.892000e-01   p_joint 4.044000e-01

Outputting figure to mutsig2_images.part000000000104/MEF2A.3_1700_10000_0.3505_0.2892_0.4044.png
                gene_name: MEF2A
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 48 percent done.
MEF2D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 2.148972e-01	ci left: 2.873209e-02	ci right 3.574387e-02	k: 321	n:10000
KS ci ratio: 2.262761e+00	ci left: 2.422185e-05	ci right 7.222801e-04	k: 2	n:10000
MEF2D   10000 perm   2 sec   (6252 perm/sec)   p_kst 2.000000e-04   p_cons 3.210000e-02   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 1.548392e-01	ci left: 2.864136e-02	ci right 3.349624e-02	k: 620	n:20000
KS ci ratio: 1.752814e+00	ci left: 5.449587e-05	ci right 5.119995e-04	k: 4	n:20000
MEF2D   20000 perm   4 sec   (5326 perm/sec)   p_kst 2.000000e-04   p_cons 3.100000e-02   p_joint 0

Joint ci ratio: 3.919869e+00	ci left: 0	ci right 1.229551e-04	k: 0	n:30000
Cons ci ratio: 1.268135e-01	ci left: 2.890608e-02	ci right 3.285213e-02	k: 925	n:30000
KS ci ratio: 1.481423e+00	ci left: 7.339990e-05	ci right 4.352646e-04	k: 6	n:30000
MEF2D   30000 perm   6 sec   (5007 perm/sec)   p_kst 2.000000e-04   p_cons 3.083333e-02   p_joint 0

Joint ci ratio: 3.919902e+00	ci left: 0	ci right 9.221773e-05	k: 0	n:40000
Cons ci ratio: 1.115449e-01	ci left: 2.827700e-02	ci right 3.164170e-02	k: 1197	n:40000
KS ci ratio: 1.481473e+00	ci left: 5.504928e-05	ci right 3.264580e-04	k: 6	n:40000
MEF2D   40000 perm   8 sec   (4823 perm/sec)   p_kst 1.500000e-04   p_cons 2.992500e-02   p_joint 0

Joint ci ratio: 6.046090e-01	ci left: 5.885084e-04	ci right 1.112260e-03	k: 41	n:50000
Cons ci ratio: 9.971753e-02	ci left: 2.848307e-02	ci right 3.149183e-02	k: 1498	n:50000
KS ci ratio: 1.385805e+00	ci left: 5.628905e-05	ci right 2.884321e-04	k: 7	n:50000
MEF2D   50000 perm   11 sec   (4679 perm/sec)   p_kst 1.400000e-04   p_cons 2.996000e-02   p_joint 8.200000e-04

Joint ci ratio: 7.999999e-01	ci left: 2.430155e-04	ci right 5.751330e-04	k: 23	n:60000
Cons ci ratio: 9.203104e-02	ci left: 2.799763e-02	ci right 3.071481e-02	k: 1760	n:60000
KS ci ratio: 1.385825e+00	ci left: 4.690730e-05	ci right 2.403631e-04	k: 7	n:60000
MEF2D   60000 perm   13 sec   (4555 perm/sec)   p_kst 1.166667e-04   p_cons 2.933333e-02   p_joint 3.833333e-04

Joint ci ratio: 8.356095e-01	ci left: 1.857140e-04	ci right 4.585455e-04	k: 21	n:70000
Cons ci ratio: 8.489613e-02	ci left: 2.830091e-02	ci right 3.082400e-02	k: 2068	n:70000
KS ci ratio: 1.385840e+00	ci left: 4.020610e-05	ci right 2.060273e-04	k: 7	n:70000
MEF2D   70000 perm   16 sec   (4417 perm/sec)   p_kst 1.000000e-04   p_cons 2.954286e-02   p_joint 3.000000e-04

Joint ci ratio: 8.000416e-01	ci left: 1.822588e-04	ci right 4.313601e-04	k: 23	n:80000
Cons ci ratio: 7.940571e-02	ci left: 2.838737e-02	ci right 3.074691e-02	k: 2364	n:80000
KS ci ratio: 1.306585e+00	ci left: 4.317386e-05	ci right 1.970303e-04	k: 8	n:80000
MEF2D   80000 perm   19 sec   (4315 perm/sec)   p_kst 1.000000e-04   p_cons 2.955000e-02   p_joint 2.875000e-04

Joint ci ratio: 7.406910e-01	ci left: 1.977109e-04	ci right 4.364545e-04	k: 27	n:90000
Cons ci ratio: 7.465690e-02	ci left: 2.861146e-02	ci right 3.084121e-02	k: 2674	n:90000
KS ci ratio: 1.131525e+00	ci left: 6.101442e-05	ci right 2.186788e-04	k: 11	n:90000
MEF2D   90000 perm   21 sec   (4223 perm/sec)   p_kst 1.222222e-04   p_cons 2.971111e-02   p_joint 3.000000e-04

Joint ci ratio: 7.407029e-01	ci left: 1.779390e-04	ci right 3.928117e-04	k: 27	n:100000
Cons ci ratio: 7.096398e-02	ci left: 2.855823e-02	ci right 3.066918e-02	k: 2960	n:100000
KS ci ratio: 1.131533e+00	ci left: 5.491284e-05	ci right 1.968118e-04	k: 11	n:100000
MEF2D   100000 perm   24 sec   (4128 perm/sec)   p_kst 1.100000e-04   p_cons 2.960000e-02   p_joint 2.700000e-04

Joint ci ratio: 7.155900e-01	ci left: 1.765683e-04	ci right 3.786040e-04	k: 29	n:110000
Cons ci ratio: 6.766260e-02	ci left: 2.860632e-02	ci right 3.061858e-02	k: 3256	n:110000
KS ci ratio: 1.047593e+00	ci left: 6.292829e-05	ci right 2.020860e-04	k: 13	n:110000
MEF2D   110000 perm   27 sec   (4052 perm/sec)   p_kst 1.181818e-04   p_cons 2.960000e-02   p_joint 2.636364e-04

Joint ci ratio: 6.721764e-01	ci left: 1.893047e-04	ci right 3.861808e-04	k: 33	n:120000
Cons ci ratio: 6.475472e-02	ci left: 2.867291e-02	ci right 3.059991e-02	k: 3555	n:120000
KS ci ratio: 9.506683e-01	ci left: 7.621338e-05	ci right 2.165160e-04	k: 16	n:120000
MEF2D   120000 perm   30 sec   (3982 perm/sec)   p_kst 1.333333e-04   p_cons 2.962500e-02   p_joint 2.750000e-04

Joint ci ratio: 8.000897e-01	ci left: 1.121573e-04	ci right 2.654597e-04	k: 23	n:130000
Cons ci ratio: 6.216724e-02	ci left: 2.875355e-02	ci right 3.060597e-02	k: 3857	n:130000
KS ci ratio: 9.506738e-01	ci left: 7.035068e-05	ci right 1.998615e-04	k: 16	n:130000
MEF2D   130000 perm   33 sec   (3914 perm/sec)   p_kst 1.230769e-04   p_cons 2.966923e-02   p_joint 1.769231e-04

Joint ci ratio: 7.543289e-01	ci left: 1.213182e-04	ci right 2.721027e-04	k: 26	n:140000
Cons ci ratio: 5.994877e-02	ci left: 2.874656e-02	ci right 3.053014e-02	k: 4148	n:140000
KS ci ratio: 9.238902e-01	ci left: 7.073816e-05	ci right 1.944118e-04	k: 17	n:140000
MEF2D   140000 perm   36 sec   (3847 perm/sec)   p_kst 1.214286e-04   p_cons 2.962857e-02   p_joint 1.857143e-04

Joint ci ratio: 7.839321e-01	ci left: 1.025176e-04	ci right 2.380580e-04	k: 24	n:150000
Cons ci ratio: 5.797894e-02	ci left: 2.871523e-02	ci right 3.043635e-02	k: 4435	n:150000
KS ci ratio: 9.238943e-01	ci left: 6.602218e-05	ci right 1.814515e-04	k: 17	n:150000
MEF2D   150000 perm   40 sec   (3783 perm/sec)   p_kst 1.133333e-04   p_cons 2.956667e-02   p_joint 1.600000e-04

Joint ci ratio: 7.839363e-01	ci left: 9.611012e-05	ci right 2.231799e-04	k: 24	n:160000
Cons ci ratio: 5.614848e-02	ci left: 2.873181e-02	ci right 3.039779e-02	k: 4729	n:160000
KS ci ratio: 9.238980e-01	ci left: 6.189572e-05	ci right 1.701111e-04	k: 17	n:160000
MEF2D   160000 perm   43 sec   (3719 perm/sec)   p_kst 1.062500e-04   p_cons 2.955625e-02   p_joint 1.500000e-04

Joint ci ratio: 8.356903e-01	ci left: 7.646823e-05	ci right 1.888217e-04	k: 21	n:170000
Cons ci ratio: 5.452586e-02	ci left: 2.870076e-02	ci right 3.031533e-02	k: 5015	n:170000
KS ci ratio: 8.764845e-01	ci left: 6.729095e-05	ci right 1.745290e-04	k: 19	n:170000
MEF2D   170000 perm   46 sec   (3660 perm/sec)   p_kst 1.117647e-04   p_cons 2.950000e-02   p_joint 1.235294e-04

Joint ci ratio: 1.087170e+00	ci left: 3.444810e-05	ci right 1.164504e-04	k: 12	n:180000
Cons ci ratio: 5.300021e-02	ci left: 2.871217e-02	ci right 3.028081e-02	k: 5308	n:180000
KS ci ratio: 8.356934e-01	ci left: 7.221991e-05	ci right 1.783319e-04	k: 21	n:180000
MEF2D   180000 perm   50 sec   (3605 perm/sec)   p_kst 1.166667e-04   p_cons 2.948889e-02   p_joint 6.666667e-05

Joint ci ratio: 1.047623e+00	ci left: 3.643182e-05	ci right 1.169992e-04	k: 13	n:190000
Cons ci ratio: 5.158636e-02	ci left: 2.873334e-02	ci right 3.026001e-02	k: 5603	n:190000
KS ci ratio: 8.001140e-01	ci left: 7.673848e-05	ci right 1.816329e-04	k: 23	n:190000
MEF2D   190000 perm   54 sec   (3543 perm/sec)   p_kst 1.210526e-04   p_cons 2.948947e-02   p_joint 6.842105e-05

Joint ci ratio: 1.012099e+00	ci left: 3.827016e-05	ci right 1.174453e-04	k: 14	n:200000
Cons ci ratio: 5.016178e-02	ci left: 2.888625e-02	ci right 3.037743e-02	k: 5925	n:200000
KS ci ratio: 8.001166e-01	ci left: 7.290149e-05	ci right 1.725515e-04	k: 23	n:200000
MEF2D   200000 perm   57 sec   (3490 perm/sec)   p_kst 1.150000e-04   p_cons 2.962500e-02   p_joint 7.000000e-05

Joint ci ratio: 1.012101e+00	ci left: 3.644775e-05	ci right 1.118528e-04	k: 14	n:210000
Cons ci ratio: 4.896221e-02	ci left: 2.889336e-02	ci right 3.034823e-02	k: 6219	n:210000
KS ci ratio: 8.001190e-01	ci left: 6.942993e-05	ci right 1.643350e-04	k: 23	n:210000
MEF2D   210000 perm   61 sec   (3435 perm/sec)   p_kst 1.095238e-04   p_cons 2.961429e-02   p_joint 6.666667e-05

Joint ci ratio: 1.012103e+00	ci left: 3.479101e-05	ci right 1.067687e-04	k: 14	n:220000
Cons ci ratio: 4.790165e-02	ci left: 2.883283e-02	ci right 3.025233e-02	k: 6498	n:220000
KS ci ratio: 8.001212e-01	ci left: 6.627397e-05	ci right 1.568654e-04	k: 23	n:220000
MEF2D   220000 perm   65 sec   (3382 perm/sec)   p_kst 1.045455e-04   p_cons 2.953636e-02   p_joint 6.363636e-05

Joint ci ratio: 1.239583e+00	ci left: 1.789308e-05	ci right 7.428045e-05	k: 9	n:230000
Cons ci ratio: 4.676162e-02	ci left: 2.895411e-02	ci right 3.034474e-02	k: 6818	n:230000
KS ci ratio: 7.687301e-01	ci left: 7.034329e-05	ci right 1.604521e-04	k: 25	n:230000
MEF2D   230000 perm   69 sec   (3334 perm/sec)   p_kst 1.086957e-04   p_cons 2.964348e-02   p_joint 3.913043e-05

Joint ci ratio: 1.306639e+00	ci left: 1.439107e-05	ci right 6.567889e-05	k: 8	n:240000
Cons ci ratio: 4.580851e-02	ci left: 2.892967e-02	ci right 3.029006e-02	k: 7105	n:240000
KS ci ratio: 7.543603e-01	ci left: 7.076811e-05	ci right 1.587294e-04	k: 26	n:240000
MEF2D   240000 perm   73 sec   (3286 perm/sec)   p_kst 1.083333e-04   p_cons 2.960417e-02   p_joint 3.333333e-05

Joint ci ratio: 1.181896e+00	ci left: 1.918172e-05	ci right 7.356019e-05	k: 10	n:250000
Cons ci ratio: 4.485828e-02	ci left: 2.897471e-02	ci right 3.030822e-02	k: 7409	n:250000
KS ci ratio: 7.407674e-01	ci left: 7.117385e-05	ci right 1.571305e-04	k: 27	n:250000
MEF2D   250000 perm   77 sec   (3240 perm/sec)   p_kst 1.080000e-04   p_cons 2.963600e-02   p_joint 4.000000e-05

Joint ci ratio: 1.181897e+00	ci left: 1.844395e-05	ci right 7.073100e-05	k: 10	n:260000
Cons ci ratio: 4.405614e-02	ci left: 2.889860e-02	ci right 3.020422e-02	k: 7682	n:260000
KS ci ratio: 7.156481e-01	ci left: 7.470029e-05	ci right 1.601839e-04	k: 29	n:260000
MEF2D   260000 perm   81 sec   (3195 perm/sec)   p_kst 1.115385e-04   p_cons 2.954615e-02   p_joint 3.846154e-05

Joint ci ratio: 1.181898e+00	ci left: 1.776084e-05	ci right 6.811137e-05	k: 10	n:270000
Cons ci ratio: 4.332079e-02	ci left: 2.879534e-02	ci right 3.007404e-02	k: 7946	n:270000
KS ci ratio: 6.929223e-01	ci left: 7.801239e-05	ci right 1.629665e-04	k: 31	n:270000
MEF2D   270000 perm   86 sec   (3149 perm/sec)   p_kst 1.148148e-04   p_cons 2.942963e-02   p_joint 3.703704e-05

Joint ci ratio: 1.181899e+00	ci left: 1.712652e-05	ci right 6.567886e-05	k: 10	n:280000
Cons ci ratio: 4.253840e-02	ci left: 2.880920e-02	ci right 3.006485e-02	k: 8241	n:280000
KS ci ratio: 6.929238e-01	ci left: 7.522619e-05	ci right 1.571464e-04	k: 31	n:280000
MEF2D   280000 perm   90 sec   (3106 perm/sec)   p_kst 1.107143e-04   p_cons 2.943214e-02   p_joint 3.571429e-05

Joint ci ratio: 1.131581e+00	ci left: 1.893518e-05	ci right 6.786808e-05	k: 11	n:290000
Cons ci ratio: 4.183481e-02	ci left: 2.877110e-02	ci right 3.000384e-02	k: 8521	n:290000
KS ci ratio: 6.823444e-01	ci left: 7.547697e-05	ci right 1.557704e-04	k: 32	n:290000
MEF2D   290000 perm   95 sec   (3065 perm/sec)   p_kst 1.103448e-04   p_cons 2.938276e-02   p_joint 3.793103e-05

Joint ci ratio: 1.131582e+00	ci left: 1.830401e-05	ci right 6.560585e-05	k: 11	n:300000
Cons ci ratio: 4.120120e-02	ci left: 2.868620e-02	ci right 2.989625e-02	k: 8786	n:300000
KS ci ratio: 6.722352e-01	ci left: 7.572011e-05	ci right 1.544775e-04	k: 33	n:300000
MEF2D   300000 perm   99 sec   (3024 perm/sec)   p_kst 1.100000e-04   p_cons 2.928667e-02   p_joint 3.666667e-05

Joint ci ratio: 1.047639e+00	ci left: 2.232906e-05	ci right 7.170989e-05	k: 13	n:310000
Cons ci ratio: 4.042334e-02	ci left: 2.884647e-02	ci right 3.003977e-02	k: 9126	n:310000
KS ci ratio: 6.625625e-01	ci left: 7.595596e-05	ci right 1.532599e-04	k: 34	n:310000
MEF2D   310000 perm   104 sec   (2985 perm/sec)   p_kst 1.096774e-04   p_cons 2.943871e-02   p_joint 4.193548e-05

Joint ci ratio: 1.047640e+00	ci left: 2.163127e-05	ci right 6.946899e-05	k: 13	n:320000
Cons ci ratio: 3.982684e-02	ci left: 2.879885e-02	ci right 2.997219e-02	k: 9402	n:320000
KS ci ratio: 6.625637e-01	ci left: 7.358230e-05	ci right 1.484706e-04	k: 34	n:320000
MEF2D   320000 perm   109 sec   (2947 perm/sec)   p_kst 1.062500e-04   p_cons 2.938125e-02   p_joint 4.062500e-05

Joint ci ratio: 1.012115e+00	ci left: 2.319392e-05	ci right 7.117965e-05	k: 14	n:330000
Cons ci ratio: 3.914571e-02	ci left: 2.891332e-02	ci right 3.007072e-02	k: 9731	n:330000
KS ci ratio: 6.625648e-01	ci left: 7.135250e-05	ci right 1.439716e-04	k: 34	n:330000
MEF2D   330000 perm   113 sec   (2910 perm/sec)   p_kst 1.030303e-04   p_cons 2.948788e-02   p_joint 4.242424e-05

Joint ci ratio: 9.799755e-01	ci left: 2.469252e-05	ci right 7.276431e-05	k: 15	n:340000
Cons ci ratio: 3.859334e-02	ci left: 2.888135e-02	ci right 3.002080e-02	k: 10012	n:340000
KS ci ratio: 6.625659e-01	ci left: 6.925387e-05	ci right 1.397372e-04	k: 34	n:340000
MEF2D   340000 perm   118 sec   (2874 perm/sec)   p_kst 1.000000e-04   p_cons 2.944706e-02   p_joint 4.411765e-05

Joint ci ratio: 9.239278e-01	ci left: 2.829489e-05	ci right 7.776643e-05	k: 17	n:350000
Cons ci ratio: 3.804086e-02	ci left: 2.888529e-02	ci right 3.000823e-02	k: 10305	n:350000
KS ci ratio: 6.532988e-01	ci left: 6.965462e-05	ci right 1.390731e-04	k: 35	n:350000
MEF2D   350000 perm   123 sec   (2840 perm/sec)   p_kst 1.000000e-04   p_cons 2.944286e-02   p_joint 4.857143e-05

Joint ci ratio: 9.799769e-01	ci left: 2.332070e-05	ci right 6.872190e-05	k: 15	n:360000
Cons ci ratio: 3.745868e-02	ci left: 2.896895e-02	ci right 3.007753e-02	k: 10627	n:360000
KS ci ratio: 6.358735e-01	ci left: 7.236604e-05	ci right 1.416629e-04	k: 37	n:360000
MEF2D   360000 perm   128 sec   (2806 perm/sec)   p_kst 1.027778e-04   p_cons 2.951944e-02   p_joint 4.166667e-05

Joint ci ratio: 9.507165e-01	ci left: 2.471745e-05	ci right 7.022337e-05	k: 16	n:370000
Cons ci ratio: 3.697034e-02	ci left: 2.894374e-02	ci right 3.003662e-02	k: 10910	n:370000
KS ci ratio: 6.358745e-01	ci left: 7.041018e-05	ci right 1.378342e-04	k: 37	n:370000
MEF2D   370000 perm   134 sec   (2771 perm/sec)   p_kst 1.000000e-04   p_cons 2.948649e-02   p_joint 4.324324e-05

Joint ci ratio: 1.239595e+00	ci left: 1.082998e-05	ci right 4.495953e-05	k: 9	n:380000
Cons ci ratio: 3.646035e-02	ci left: 2.898255e-02	ci right 3.006148e-02	k: 11217	n:380000
KS ci ratio: 6.197730e-01	ci left: 7.298207e-05	ci right 1.402981e-04	k: 39	n:380000
MEF2D   380000 perm   139 sec   (2738 perm/sec)   p_kst 1.026316e-04   p_cons 2.951842e-02   p_joint 2.368421e-05

Joint ci ratio: 1.239595e+00	ci left: 1.055229e-05	ci right 4.380673e-05	k: 9	n:390000
Cons ci ratio: 3.598378e-02	ci left: 2.899914e-02	ci right 3.006428e-02	k: 11516	n:390000
KS ci ratio: 6.048358e-01	ci left: 7.544284e-05	ci right 1.426156e-04	k: 41	n:390000
MEF2D   390000 perm   144 sec   (2706 perm/sec)   p_kst 1.051282e-04   p_cons 2.952821e-02   p_joint 2.307692e-05

Joint ci ratio: 1.239596e+00	ci left: 1.028848e-05	ci right 4.271158e-05	k: 9	n:400000
Cons ci ratio: 3.552696e-02	ci left: 2.901250e-02	ci right 3.006433e-02	k: 11814	n:400000
KS ci ratio: 5.909290e-01	ci left: 7.779934e-05	ci right 1.447991e-04	k: 43	n:400000
MEF2D   400000 perm   150 sec   (2675 perm/sec)   p_kst 1.075000e-04   p_cons 2.953500e-02   p_joint 2.250000e-05

Joint ci ratio: 1.306651e+00	ci left: 8.424017e-06	ci right 3.844644e-05	k: 8	n:410000
Cons ci ratio: 3.510504e-02	ci left: 2.899628e-02	ci right 3.003478e-02	k: 12100	n:410000
KS ci ratio: 5.843263e-01	ci left: 7.797780e-05	ci right 1.440655e-04	k: 44	n:410000
MEF2D   410000 perm   155 sec   (2644 perm/sec)   p_kst 1.073171e-04   p_cons 2.951220e-02   p_joint 1.951220e-05

Joint ci ratio: 1.306651e+00	ci left: 8.223445e-06	ci right 3.753106e-05	k: 8	n:420000
Cons ci ratio: 3.465746e-02	ci left: 2.904700e-02	ci right 3.007379e-02	k: 12414	n:420000
KS ci ratio: 5.843271e-01	ci left: 7.612116e-05	ci right 1.406354e-04	k: 44	n:420000
MEF2D   420000 perm   161 sec   (2614 perm/sec)   p_kst 1.047619e-04   p_cons 2.955714e-02   p_joint 1.904762e-05

Joint ci ratio: 1.306651e+00	ci left: 8.032201e-06	ci right 3.665825e-05	k: 8	n:430000
Cons ci ratio: 3.426264e-02	ci left: 2.903548e-02	ci right 3.004994e-02	k: 12702	n:430000
KS ci ratio: 5.843278e-01	ci left: 7.435088e-05	ci right 1.373649e-04	k: 44	n:430000
MEF2D   430000 perm   167 sec   (2580 perm/sec)   p_kst 1.023256e-04   p_cons 2.953953e-02   p_joint 1.860465e-05

Joint ci ratio: 1.306652e+00	ci left: 7.849650e-06	ci right 3.582511e-05	k: 8	n:440000
Cons ci ratio: 3.385820e-02	ci left: 2.906287e-02	ci right 3.006607e-02	k: 13007	n:440000
KS ci ratio: 5.843286e-01	ci left: 7.266106e-05	ci right 1.342430e-04	k: 44	n:440000
MEF2D   440000 perm   172 sec   (2552 perm/sec)   p_kst 1.000000e-04   p_cons 2.956136e-02   p_joint 1.818182e-05

Joint ci ratio: 1.306652e+00	ci left: 7.675213e-06	ci right 3.502901e-05	k: 8	n:450000
Cons ci ratio: 3.350018e-02	ci left: 2.903400e-02	ci right 3.002540e-02	k: 13287	n:450000
KS ci ratio: 5.717603e-01	ci left: 7.484046e-05	ci right 1.363478e-04	k: 46	n:450000
MEF2D   450000 perm   178 sec   (2526 perm/sec)   p_kst 1.022222e-04   p_cons 2.952667e-02   p_joint 1.777778e-05

Joint ci ratio: 1.306652e+00	ci left: 7.508360e-06	ci right 3.426751e-05	k: 8	n:460000
Cons ci ratio: 3.308299e-02	ci left: 2.912720e-02	ci right 3.010917e-02	k: 13623	n:460000
KS ci ratio: 5.599696e-01	ci left: 7.693882e-05	ci right 1.383477e-04	k: 48	n:460000
MEF2D   460000 perm   184 sec   (2499 perm/sec)   p_kst 1.043478e-04   p_cons 2.961522e-02   p_joint 1.739130e-05

Joint ci ratio: 1.481608e+00	ci left: 4.684895e-06	ci right 2.778591e-05	k: 6	n:470000
Cons ci ratio: 3.269550e-02	ci left: 2.919118e-02	ci right 3.016356e-02	k: 13947	n:470000
KS ci ratio: 5.488794e-01	ci left: 7.896050e-05	ci right 1.402503e-04	k: 50	n:470000
MEF2D   470000 perm   190 sec   (2472 perm/sec)   p_kst 1.063830e-04   p_cons 2.967447e-02   p_joint 1.276596e-05

Joint ci ratio: 1.385916e+00	ci left: 5.863276e-06	ci right 3.004701e-05	k: 7	n:480000
Cons ci ratio: 3.237980e-02	ci left: 2.914921e-02	ci right 3.011064e-02	k: 14221	n:480000
KS ci ratio: 5.435762e-01	ci left: 7.911109e-05	ci right 1.396968e-04	k: 51	n:480000
MEF2D   480000 perm   196 sec   (2446 perm/sec)   p_kst 1.062500e-04   p_cons 2.962708e-02   p_joint 1.458333e-05

Joint ci ratio: 1.385917e+00	ci left: 5.743617e-06	ci right 2.943381e-05	k: 7	n:490000
Cons ci ratio: 3.203779e-02	ci left: 2.917177e-02	ci right 3.012360e-02	k: 14526	n:490000
KS ci ratio: 5.435768e-01	ci left: 7.749656e-05	ci right 1.368459e-04	k: 51	n:490000
MEF2D   490000 perm   202 sec   (2421 perm/sec)   p_kst 1.040816e-04   p_cons 2.964490e-02   p_joint 1.428571e-05

Joint ci ratio: 1.385917e+00	ci left: 5.628744e-06	ci right 2.884514e-05	k: 7	n:500000
Cons ci ratio: 3.172183e-02	ci left: 2.916570e-02	ci right 3.010776e-02	k: 14817	n:500000
KS ci ratio: 5.384243e-01	ci left: 7.767312e-05	ci right 1.363800e-04	k: 52	n:500000
MEF2D   500000 perm   209 sec   (2395 perm/sec)   p_kst 1.040000e-04   p_cons 2.963400e-02   p_joint 1.400000e-05

Joint ci ratio: 1.385917e+00	ci left: 5.518376e-06	ci right 2.827955e-05	k: 7	n:510000
Cons ci ratio: 3.143326e-02	ci left: 2.912682e-02	ci right 3.005892e-02	k: 15091	n:510000
KS ci ratio: 5.238028e-01	ci left: 8.124321e-05	ci right 1.403704e-04	k: 55	n:510000
MEF2D   510000 perm   215 sec   (2369 perm/sec)   p_kst 1.078431e-04   p_cons 2.959020e-02   p_joint 1.372549e-05

Joint ci ratio: 1.385917e+00	ci left: 5.412253e-06	ci right 2.773572e-05	k: 7	n:520000
Cons ci ratio: 3.110448e-02	ci left: 2.917728e-02	ci right 3.010105e-02	k: 15411	n:520000
KS ci ratio: 5.146920e-01	ci left: 8.302265e-05	ci right 1.420171e-04	k: 57	n:520000
MEF2D   520000 perm   222 sec   (2345 perm/sec)   p_kst 1.096154e-04   p_cons 2.963654e-02   p_joint 1.346154e-05

Joint ci ratio: 1.385918e+00	ci left: 5.310135e-06	ci right 2.721240e-05	k: 7	n:530000
Cons ci ratio: 3.082419e-02	ci left: 2.915471e-02	ci right 3.006931e-02	k: 15693	n:530000
KS ci ratio: 5.018752e-01	ci left: 8.639036e-05	ci right 1.457182e-04	k: 60	n:530000
MEF2D   530000 perm   228 sec   (2321 perm/sec)   p_kst 1.132075e-04   p_cons 2.960943e-02   p_joint 1.320755e-05

Joint ci ratio: 1.385918e+00	ci left: 5.211799e-06	ci right 2.670847e-05	k: 7	n:540000
Cons ci ratio: 3.056416e-02	ci left: 2.910912e-02	ci right 3.001445e-02	k: 15962	n:540000
KS ci ratio: 5.018758e-01	ci left: 8.479052e-05	ci right 1.430197e-04	k: 60	n:540000
MEF2D   540000 perm   235 sec   (2298 perm/sec)   p_kst 1.111111e-04   p_cons 2.955926e-02   p_joint 1.296296e-05

Joint ci ratio: 1.385918e+00	ci left: 5.117039e-06	ci right 2.622287e-05	k: 7	n:550000
Cons ci ratio: 3.026836e-02	ci left: 2.914464e-02	ci right 3.004214e-02	k: 16275	n:550000
KS ci ratio: 5.018763e-01	ci left: 8.324886e-05	ci right 1.404194e-04	k: 60	n:550000
MEF2D   550000 perm   242 sec   (2274 perm/sec)   p_kst 1.090909e-04   p_cons 2.959091e-02   p_joint 1.272727e-05

Joint ci ratio: 1.385918e+00	ci left: 5.025663e-06	ci right 2.575461e-05	k: 7	n:560000
Cons ci ratio: 3.000895e-02	ci left: 2.912574e-02	ci right 3.001485e-02	k: 16558	n:560000
KS ci ratio: 4.978125e-01	ci left: 8.332272e-05	ci right 1.399211e-04	k: 61	n:560000
MEF2D   560000 perm   249 sec   (2252 perm/sec)   p_kst 1.089286e-04   p_cons 2.956786e-02   p_joint 1.250000e-05

Joint ci ratio: 1.385918e+00	ci left: 4.937493e-06	ci right 2.530277e-05	k: 7	n:570000
Cons ci ratio: 2.977159e-02	ci left: 2.907793e-02	ci right 2.995844e-02	k: 16824	n:570000
KS ci ratio: 4.978130e-01	ci left: 8.186090e-05	ci right 1.374664e-04	k: 61	n:570000
MEF2D   570000 perm   256 sec   (2229 perm/sec)   p_kst 1.070175e-04   p_cons 2.951579e-02   p_joint 1.228070e-05

Joint ci ratio: 1.385919e+00	ci left: 4.852363e-06	ci right 2.486652e-05	k: 7	n:580000
Cons ci ratio: 2.952375e-02	ci left: 2.906261e-02	ci right 2.993520e-02	k: 17108	n:580000
KS ci ratio: 4.938463e-01	ci left: 8.195792e-05	ci right 1.370345e-04	k: 62	n:580000
MEF2D   580000 perm   263 sec   (2207 perm/sec)   p_kst 1.068966e-04   p_cons 2.949655e-02   p_joint 1.206897e-05

Joint ci ratio: 1.385919e+00	ci left: 4.770120e-06	ci right 2.444506e-05	k: 7	n:590000
Cons ci ratio: 2.928200e-02	ci left: 2.904784e-02	ci right 2.991272e-02	k: 17392	n:590000
KS ci ratio: 4.861890e-01	ci left: 8.353961e-05	ci right 1.385175e-04	k: 64	n:590000
MEF2D   590000 perm   270 sec   (2186 perm/sec)   p_kst 1.084746e-04   p_cons 2.947797e-02   p_joint 1.186441e-05

Joint ci ratio: 1.600324e+00	ci left: 2.705816e-06	ci right 1.944711e-05	k: 5	n:600000
Cons ci ratio: 2.902158e-02	ci left: 2.908158e-02	ci right 2.993964e-02	k: 17705	n:600000
KS ci ratio: 4.824917e-01	ci left: 8.361034e-05	ci right 1.380777e-04	k: 65	n:600000
MEF2D   600000 perm   277 sec   (2165 perm/sec)   p_kst 1.083333e-04   p_cons 2.950833e-02   p_joint 8.333333e-06

Joint ci ratio: 1.600324e+00	ci left: 2.661458e-06	ci right 1.912831e-05	k: 5	n:610000
Cons ci ratio: 2.880424e-02	ci left: 2.904262e-02	ci right 2.989301e-02	k: 17974	n:610000
KS ci ratio: 4.824921e-01	ci left: 8.223967e-05	ci right 1.358141e-04	k: 65	n:610000
MEF2D   610000 perm   284 sec   (2144 perm/sec)   p_kst 1.065574e-04   p_cons 2.946557e-02   p_joint 8.196721e-06

Joint ci ratio: 1.600324e+00	ci left: 2.618531e-06	ci right 1.881979e-05	k: 5	n:620000
Cons ci ratio: 2.856027e-02	ci left: 2.906741e-02	ci right 2.991119e-02	k: 18282	n:620000
KS ci ratio: 4.824926e-01	ci left: 8.091321e-05	ci right 1.336236e-04	k: 65	n:620000
MEF2D   620000 perm   292 sec   (2125 perm/sec)   p_kst 1.048387e-04   p_cons 2.948710e-02   p_joint 8.064516e-06

Joint ci ratio: 1.600324e+00	ci left: 2.576967e-06	ci right 1.852106e-05	k: 5	n:630000
Cons ci ratio: 2.833654e-02	ci left: 2.906306e-02	ci right 2.990000e-02	k: 18572	n:630000
KS ci ratio: 4.824930e-01	ci left: 7.962885e-05	ci right 1.315026e-04	k: 65	n:630000
MEF2D   630000 perm   299 sec   (2106 perm/sec)   p_kst 1.031746e-04   p_cons 2.947937e-02   p_joint 7.936508e-06

Joint ci ratio: 1.600325e+00	ci left: 2.536702e-06	ci right 1.823167e-05	k: 5	n:640000
Cons ci ratio: 2.808731e-02	ci left: 2.912095e-02	ci right 2.995207e-02	k: 18902	n:640000
KS ci ratio: 4.824934e-01	ci left: 7.838464e-05	ci right 1.294479e-04	k: 65	n:640000
MEF2D   640000 perm   307 sec   (2087 perm/sec)   p_kst 1.015625e-04   p_cons 2.953438e-02   p_joint 7.812500e-06

Joint ci ratio: 1.481612e+00	ci left: 3.387537e-06	ci right 2.009139e-05	k: 6	n:650000
Cons ci ratio: 2.787966e-02	ci left: 2.910527e-02	ci right 2.992970e-02	k: 19185	n:650000
KS ci ratio: 4.788792e-01	ci left: 7.853068e-05	ci right 1.291800e-04	k: 66	n:650000
MEF2D   650000 perm   314 sec   (2067 perm/sec)   p_kst 1.015385e-04   p_cons 2.951538e-02   p_joint 9.230769e-06

Joint ci ratio: 1.481612e+00	ci left: 3.336210e-06	ci right 1.978698e-05	k: 6	n:660000
Cons ci ratio: 2.767802e-02	ci left: 2.908708e-02	ci right 2.990494e-02	k: 19466	n:660000
KS ci ratio: 4.788796e-01	ci left: 7.734081e-05	ci right 1.272228e-04	k: 66	n:660000
MEF2D   660000 perm   322 sec   (2049 perm/sec)   p_kst 1.000000e-04   p_cons 2.949394e-02   p_joint 9.090909e-06

Joint ci ratio: 1.385920e+00	ci left: 4.200552e-06	ci right 2.152626e-05	k: 7	n:670000
Cons ci ratio: 2.746851e-02	ci left: 2.909465e-02	ci right 2.990644e-02	k: 19764	n:670000
KS ci ratio: 4.753453e-01	ci left: 7.749944e-05	ci right 1.269948e-04	k: 67	n:670000
MEF2D   670000 perm   330 sec   (2031 perm/sec)   p_kst 1.000000e-04   p_cons 2.949851e-02   p_joint 1.044776e-05

Joint ci ratio: 1.385920e+00	ci left: 4.138779e-06	ci right 2.120970e-05	k: 7	n:680000
Cons ci ratio: 2.726859e-02	ci left: 2.909180e-02	ci right 2.989751e-02	k: 20055	n:680000
KS ci ratio: 4.753457e-01	ci left: 7.635973e-05	ci right 1.251272e-04	k: 67	n:680000
MEF2D   680000 perm   338 sec   (2014 perm/sec)   p_kst 9.852941e-05   p_cons 2.949265e-02   p_joint 1.029412e-05

Joint ci ratio: 1.385920e+00	ci left: 4.078796e-06	ci right 2.090232e-05	k: 7	n:690000
Cons ci ratio: 2.705927e-02	ci left: 2.911785e-02	ci right 2.991799e-02	k: 20366	n:690000
KS ci ratio: 4.753461e-01	ci left: 7.525306e-05	ci right 1.233138e-04	k: 67	n:690000
MEF2D   690000 perm   346 sec   (1997 perm/sec)   p_kst 9.710145e-05   p_cons 2.951594e-02   p_joint 1.014493e-05

Joint ci ratio: 1.385920e+00	ci left: 4.020528e-06	ci right 2.060371e-05	k: 7	n:700000
Cons ci ratio: 2.687279e-02	ci left: 2.910486e-02	ci right 2.989904e-02	k: 20650	n:700000
KS ci ratio: 4.718889e-01	ci left: 7.543599e-05	ci right 1.231501e-04	k: 68	n:700000
MEF2D   700000 perm   354 sec   (1980 perm/sec)   p_kst 9.714286e-05   p_cons 2.950000e-02   p_joint 1.000000e-05

Joint ci ratio: 1.306657e+00	ci left: 4.864565e-06	ci right 2.220155e-05	k: 8	n:710000
Cons ci ratio: 2.668288e-02	ci left: 2.910764e-02	ci right 2.989620e-02	k: 20945	n:710000
KS ci ratio: 4.685062e-01	ci left: 7.561501e-05	ci right 1.229898e-04	k: 69	n:710000
MEF2D   710000 perm   362 sec   (1963 perm/sec)   p_kst 9.718310e-05   p_cons 2.950000e-02   p_joint 1.126761e-05

Joint ci ratio: 1.306658e+00	ci left: 4.797001e-06	ci right 2.189320e-05	k: 8	n:720000
Cons ci ratio: 2.649309e-02	ci left: 2.911865e-02	ci right 2.990181e-02	k: 21246	n:720000
KS ci ratio: 4.651951e-01	ci left: 7.579025e-05	ci right 1.228329e-04	k: 70	n:720000
MEF2D   720000 perm   370 sec   (1946 perm/sec)   p_kst 9.722222e-05   p_cons 2.950833e-02   p_joint 1.111111e-05

Joint ci ratio: 1.306658e+00	ci left: 4.731288e-06	ci right 2.159330e-05	k: 8	n:730000
Cons ci ratio: 2.630666e-02	ci left: 2.913073e-02	ci right 2.990862e-02	k: 21548	n:730000
KS ci ratio: 4.619533e-01	ci left: 7.596184e-05	ci right 1.226790e-04	k: 71	n:730000
MEF2D   730000 perm   378 sec   (1929 perm/sec)   p_kst 9.726027e-05   p_cons 2.951781e-02   p_joint 1.095890e-05

Joint ci ratio: 1.306658e+00	ci left: 4.667352e-06	ci right 2.130150e-05	k: 8	n:740000
Cons ci ratio: 2.614570e-02	ci left: 2.909551e-02	ci right 2.986764e-02	k: 21815	n:740000
KS ci ratio: 4.587784e-01	ci left: 7.612990e-05	ci right 1.225283e-04	k: 72	n:740000
MEF2D   740000 perm   387 sec   (1913 perm/sec)   p_kst 9.729730e-05   p_cons 2.947973e-02   p_joint 1.081081e-05

Joint ci ratio: 1.306658e+00	ci left: 4.605120e-06	ci right 2.101748e-05	k: 8	n:750000
Cons ci ratio: 2.595679e-02	ci left: 2.912881e-02	ci right 2.989616e-02	k: 22133	n:750000
KS ci ratio: 4.587787e-01	ci left: 7.511482e-05	ci right 1.208946e-04	k: 72	n:750000
MEF2D   750000 perm   395 sec   (1898 perm/sec)   p_kst 9.600000e-05   p_cons 2.951067e-02   p_joint 1.066667e-05

Joint ci ratio: 1.306658e+00	ci left: 4.544527e-06	ci right 2.074093e-05	k: 8	n:760000
Cons ci ratio: 2.578138e-02	ci left: 2.914034e-02	ci right 2.990272e-02	k: 22435	n:760000
KS ci ratio: 4.587790e-01	ci left: 7.412646e-05	ci right 1.193039e-04	k: 72	n:760000
MEF2D   760000 perm   404 sec   (1882 perm/sec)   p_kst 9.473684e-05   p_cons 2.951974e-02   p_joint 1.052632e-05

Joint ci ratio: 1.306658e+00	ci left: 4.485507e-06	ci right 2.047157e-05	k: 8	n:770000
Cons ci ratio: 2.561761e-02	ci left: 2.913352e-02	ci right 2.989081e-02	k: 22723	n:770000
KS ci ratio: 4.467028e-01	ci left: 7.776616e-05	ci right 1.235379e-04	k: 76	n:770000
MEF2D   770000 perm   413 sec   (1866 perm/sec)   p_kst 9.870130e-05   p_cons 2.951039e-02   p_joint 1.038961e-05

Joint ci ratio: 1.239604e+00	ci left: 5.276132e-06	ci right 2.190348e-05	k: 9	n:780000
Cons ci ratio: 2.544553e-02	ci left: 2.915236e-02	ci right 2.990498e-02	k: 23031	n:780000
KS ci ratio: 4.410118e-01	ci left: 7.904663e-05	ci right 1.248030e-04	k: 78	n:780000
MEF2D   780000 perm   421 sec   (1851 perm/sec)   p_kst 1.000000e-04   p_cons 2.952692e-02   p_joint 1.153846e-05

Joint ci ratio: 1.239604e+00	ci left: 5.209346e-06	ci right 2.162622e-05	k: 9	n:790000
Cons ci ratio: 2.528301e-02	ci left: 2.915691e-02	ci right 2.990477e-02	k: 23328	n:790000
KS ci ratio: 4.382469e-01	ci left: 7.917172e-05	ci right 1.246283e-04	k: 79	n:790000
MEF2D   790000 perm   430 sec   (1836 perm/sec)   p_kst 1.000000e-04   p_cons 2.952911e-02   p_joint 1.139241e-05

Joint ci ratio: 1.239604e+00	ci left: 5.144229e-06	ci right 2.135590e-05	k: 9	n:800000
Cons ci ratio: 2.511535e-02	ci left: 2.918000e-02	ci right 2.992341e-02	k: 23640	n:800000
KS ci ratio: 4.382471e-01	ci left: 7.818206e-05	ci right 1.230705e-04	k: 79	n:800000
MEF2D   800000 perm   439 sec   (1822 perm/sec)   p_kst 9.875000e-05   p_cons 2.955000e-02   p_joint 1.125000e-05

Joint ci ratio: 1.239604e+00	ci left: 5.080720e-06	ci right 2.109224e-05	k: 9	n:810000
Cons ci ratio: 2.495796e-02	ci left: 2.918658e-02	ci right 2.992543e-02	k: 23939	n:810000
KS ci ratio: 4.382474e-01	ci left: 7.721684e-05	ci right 1.215511e-04	k: 79	n:810000
MEF2D   810000 perm   448 sec   (1807 perm/sec)   p_kst 9.753086e-05   p_cons 2.955432e-02   p_joint 1.111111e-05

Joint ci ratio: 1.239605e+00	ci left: 5.018760e-06	ci right 2.083502e-05	k: 9	n:820000
Cons ci ratio: 2.479506e-02	ci left: 2.921241e-02	ci right 2.994702e-02	k: 24254	n:820000
KS ci ratio: 4.328697e-01	ci left: 7.844672e-05	ci right 1.227737e-04	k: 81	n:820000
MEF2D   820000 perm   457 sec   (1793 perm/sec)   p_kst 9.878049e-05   p_cons 2.957805e-02   p_joint 1.097561e-05

Joint ci ratio: 1.239605e+00	ci left: 4.958292e-06	ci right 2.058400e-05	k: 9	n:830000
Cons ci ratio: 2.465083e-02	ci left: 2.920170e-02	ci right 2.993171e-02	k: 24539	n:830000
KS ci ratio: 4.276852e-01	ci left: 7.965020e-05	ci right 1.239636e-04	k: 83	n:830000
MEF2D   830000 perm   466 sec   (1779 perm/sec)   p_kst 1.000000e-04   p_cons 2.956506e-02   p_joint 1.084337e-05

Joint ci ratio: 1.239605e+00	ci left: 4.899265e-06	ci right 2.033895e-05	k: 9	n:840000
Cons ci ratio: 2.450908e-02	ci left: 2.919126e-02	ci right 2.991675e-02	k: 24824	n:840000
KS ci ratio: 4.251619e-01	ci left: 7.976468e-05	ci right 1.238053e-04	k: 84	n:840000
MEF2D   840000 perm   476 sec   (1766 perm/sec)   p_kst 1.000000e-04   p_cons 2.955238e-02   p_joint 1.071429e-05

Joint ci ratio: 8.992991e-01	ci left: 1.255057e-05	ci right 3.346775e-05	k: 18	n:850000
Cons ci ratio: 2.437225e-02	ci left: 2.917523e-02	ci right 2.989622e-02	k: 25104	n:850000
KS ci ratio: 4.226828e-01	ci left: 7.987720e-05	ci right 1.236501e-04	k: 85	n:850000
MEF2D   850000 perm   485 sec   (1753 perm/sec)   p_kst 1.000000e-04   p_cons 2.953412e-02   p_joint 2.117647e-05

Joint ci ratio: 8.765279e-01	ci left: 1.330149e-05	ci right 3.450078e-05	k: 19	n:860000
Cons ci ratio: 2.423867e-02	ci left: 2.915727e-02	ci right 2.987381e-02	k: 25382	n:860000
KS ci ratio: 4.202466e-01	ci left: 7.998785e-05	ci right 1.234977e-04	k: 86	n:860000
MEF2D   860000 perm   494 sec   (1739 perm/sec)   p_kst 1.000000e-04   p_cons 2.951395e-02   p_joint 2.209302e-05

Joint ci ratio: 8.554033e-01	ci left: 1.404203e-05	ci right 3.550366e-05	k: 20	n:870000
Cons ci ratio: 2.408165e-02	ci left: 2.920030e-02	ci right 2.991319e-02	k: 25713	n:870000
KS ci ratio: 4.154977e-01	ci left: 8.112556e-05	ci right 1.246175e-04	k: 88	n:870000
MEF2D   870000 perm   504 sec   (1725 perm/sec)   p_kst 1.011494e-04   p_cons 2.955517e-02   p_joint 2.298851e-05

Joint ci ratio: 8.554034e-01	ci left: 1.388246e-05	ci right 3.510021e-05	k: 20	n:880000
Cons ci ratio: 2.395086e-02	ci left: 2.918700e-02	ci right 2.989565e-02	k: 25995	n:880000
KS ci ratio: 4.131829e-01	ci left: 8.122157e-05	ci right 1.244555e-04	k: 89	n:880000
MEF2D   880000 perm   514 sec   (1712 perm/sec)   p_kst 1.011364e-04   p_cons 2.953977e-02   p_joint 2.272727e-05

Joint ci ratio: 8.554036e-01	ci left: 1.372648e-05	ci right 3.470583e-05	k: 20	n:890000
Cons ci ratio: 2.381565e-02	ci left: 2.918966e-02	ci right 2.989431e-02	k: 26291	n:890000
KS ci ratio: 4.109064e-01	ci left: 8.131607e-05	ci right 1.242966e-04	k: 90	n:890000
MEF2D   890000 perm   524 sec   (1699 perm/sec)   p_kst 1.011236e-04   p_cons 2.954045e-02   p_joint 2.247191e-05

Joint ci ratio: 8.554037e-01	ci left: 1.357396e-05	ci right 3.432021e-05	k: 20	n:900000
Cons ci ratio: 2.367995e-02	ci left: 2.919889e-02	ci right 2.989970e-02	k: 26593	n:900000
KS ci ratio: 4.086671e-01	ci left: 8.140912e-05	ci right 1.241406e-04	k: 91	n:900000
MEF2D   900000 perm   533 sec   (1687 perm/sec)   p_kst 1.011111e-04   p_cons 2.954778e-02   p_joint 2.222222e-05

Joint ci ratio: 8.554038e-01	ci left: 1.342480e-05	ci right 3.394307e-05	k: 20	n:910000
Cons ci ratio: 2.353213e-02	ci left: 2.924290e-02	ci right 2.994032e-02	k: 26927	n:910000
KS ci ratio: 4.086674e-01	ci left: 8.051450e-05	ci right 1.227764e-04	k: 91	n:910000
MEF2D   910000 perm   543 sec   (1675 perm/sec)   p_kst 1.000000e-04   p_cons 2.959011e-02   p_joint 2.197802e-05

Joint ci ratio: 8.554039e-01	ci left: 1.327887e-05	ci right 3.357413e-05	k: 20	n:920000
Cons ci ratio: 2.340473e-02	ci left: 2.924273e-02	ci right 2.993632e-02	k: 27221	n:920000
KS ci ratio: 4.064643e-01	ci left: 8.061485e-05	ci right 1.226397e-04	k: 92	n:920000
MEF2D   920000 perm   553 sec   (1662 perm/sec)   p_kst 1.000000e-04   p_cons 2.958804e-02   p_joint 2.173913e-05

Joint ci ratio: 8.554040e-01	ci left: 1.313609e-05	ci right 3.321312e-05	k: 20	n:930000
Cons ci ratio: 2.327459e-02	ci left: 2.925434e-02	ci right 2.994429e-02	k: 27526	n:930000
KS ci ratio: 4.042965e-01	ci left: 8.071364e-05	ci right 1.225054e-04	k: 93	n:930000
MEF2D   930000 perm   563 sec   (1650 perm/sec)   p_kst 1.000000e-04   p_cons 2.959785e-02   p_joint 2.150538e-05

Joint ci ratio: 8.554041e-01	ci left: 1.299634e-05	ci right 3.285979e-05	k: 20	n:940000
Cons ci ratio: 2.314231e-02	ci left: 2.927629e-02	ci right 2.996279e-02	k: 27841	n:940000
KS ci ratio: 4.021630e-01	ci left: 8.081091e-05	ci right 1.223733e-04	k: 94	n:940000
MEF2D   940000 perm   574 sec   (1639 perm/sec)   p_kst 1.000000e-04   p_cons 2.961809e-02   p_joint 2.127660e-05

Joint ci ratio: 8.554042e-01	ci left: 1.285954e-05	ci right 3.251390e-05	k: 20	n:950000
Cons ci ratio: 2.301268e-02	ci left: 2.929674e-02	ci right 2.997982e-02	k: 28155	n:950000
KS ci ratio: 4.021632e-01	ci left: 7.996026e-05	ci right 1.210852e-04	k: 94	n:950000
MEF2D   950000 perm   584 sec   (1627 perm/sec)   p_kst 9.894737e-05   p_cons 2.963684e-02   p_joint 2.105263e-05

Joint ci ratio: 8.554043e-01	ci left: 1.272559e-05	ci right 3.217521e-05	k: 20	n:960000
Cons ci ratio: 2.290346e-02	ci left: 2.927120e-02	ci right 2.995040e-02	k: 28425	n:960000
KS ci ratio: 4.021634e-01	ci left: 7.912734e-05	ci right 1.198239e-04	k: 94	n:960000
MEF2D   960000 perm   594 sec   (1616 perm/sec)   p_kst 9.791667e-05   p_cons 2.960938e-02   p_joint 2.083333e-05

Joint ci ratio: 8.357369e-01	ci left: 1.340142e-05	ci right 3.309335e-05	k: 21	n:970000
Cons ci ratio: 2.279127e-02	ci left: 2.925746e-02	ci right 2.993298e-02	k: 28706	n:970000
KS ci ratio: 4.000633e-01	ci left: 7.923851e-05	ci right 1.197230e-04	k: 95	n:970000
MEF2D   970000 perm   604 sec   (1605 perm/sec)   p_kst 9.793814e-05   p_cons 2.959381e-02   p_joint 2.164948e-05

Joint ci ratio: 8.357370e-01	ci left: 1.326467e-05	ci right 3.275566e-05	k: 21	n:980000
Cons ci ratio: 2.267024e-02	ci left: 2.927041e-02	ci right 2.994258e-02	k: 29013	n:980000
KS ci ratio: 3.959598e-01	ci left: 8.026649e-05	ci right 1.207454e-04	k: 97	n:980000
MEF2D   980000 perm   615 sec   (1594 perm/sec)   p_kst 9.897959e-05   p_cons 2.960510e-02   p_joint 2.142857e-05

Joint ci ratio: 8.357371e-01	ci left: 1.313068e-05	ci right 3.242480e-05	k: 21	n:990000
Cons ci ratio: 2.255905e-02	ci left: 2.926300e-02	ci right 2.993167e-02	k: 29300	n:990000
KS ci ratio: 3.939549e-01	ci left: 8.036549e-05	ci right 1.206357e-04	k: 98	n:990000
MEF2D   990000 perm   625 sec   (1583 perm/sec)   p_kst 9.898990e-05   p_cons 2.959596e-02   p_joint 2.121212e-05

Joint ci ratio: 8.357372e-01	ci left: 1.299938e-05	ci right 3.210055e-05	k: 21	n:1000000
Cons ci ratio: 2.244595e-02	ci left: 2.926471e-02	ci right 2.993002e-02	k: 29596	n:1000000
KS ci ratio: 3.919802e-01	ci left: 8.046302e-05	ci right 1.205277e-04	k: 99	n:1000000
MEF2D   1000000 perm   636 sec   (1573 perm/sec)   p_kst 9.900000e-05   p_cons 2.959600e-02   p_joint 2.100000e-05

Joint ci ratio: 1.012132e+00	ci left: 7.578169e-06	ci right 2.325694e-05	k: 14	n:1010000
Cons ci ratio: 2.232762e-02	ci left: 2.928411e-02	ci right 2.994631e-02	k: 29910	n:1010000
KS ci ratio: 3.900349e-01	ci left: 8.055911e-05	ci right 1.204213e-04	k: 100	n:1010000
MEF2D   1010000 perm   647 sec   (1562 perm/sec)   p_kst 9.900990e-05   p_cons 2.961386e-02   p_joint 1.386139e-05

Joint ci ratio: 1.087205e+00	ci left: 6.079010e-06	ci right 2.055048e-05	k: 12	n:1020000
Cons ci ratio: 2.221531e-02	ci left: 2.929242e-02	ci right 2.995143e-02	k: 30213	n:1020000
KS ci ratio: 3.862294e-01	ci left: 8.153876e-05	ci right 1.213919e-04	k: 102	n:1020000
MEF2D   1020000 perm   657 sec   (1551 perm/sec)   p_kst 1.000000e-04   p_cons 2.962059e-02   p_joint 1.176471e-05

Joint ci ratio: 1.087205e+00	ci left: 6.019990e-06	ci right 2.035096e-05	k: 12	n:1030000
Cons ci ratio: 2.210057e-02	ci left: 2.931120e-02	ci right 2.996718e-02	k: 30527	n:1030000
KS ci ratio: 3.807243e-01	ci left: 8.337898e-05	ci right 1.234054e-04	k: 105	n:1030000
MEF2D   1030000 perm   668 sec   (1541 perm/sec)   p_kst 1.019417e-04   p_cons 2.963786e-02   p_joint 1.165049e-05

Joint ci ratio: 1.087205e+00	ci left: 5.962105e-06	ci right 2.015528e-05	k: 12	n:1040000
Cons ci ratio: 2.199530e-02	ci left: 2.930953e-02	ci right 2.996232e-02	k: 30820	n:1040000
KS ci ratio: 3.789410e-01	ci left: 8.344700e-05	ci right 1.232717e-04	k: 106	n:1040000
MEF2D   1040000 perm   679 sec   (1531 perm/sec)   p_kst 1.019231e-04   p_cons 2.963462e-02   p_joint 1.153846e-05

Joint ci ratio: 1.087205e+00	ci left: 5.905323e-06	ci right 1.996333e-05	k: 12	n:1050000
Cons ci ratio: 2.188754e-02	ci left: 2.931833e-02	ci right 2.996807e-02	k: 31124	n:1050000
KS ci ratio: 3.789412e-01	ci left: 8.265225e-05	ci right 1.220977e-04	k: 106	n:1050000
MEF2D   1050000 perm   690 sec   (1521 perm/sec)   p_kst 1.009524e-04   p_cons 2.964190e-02   p_joint 1.142857e-05

Joint ci ratio: 1.047657e+00	ci left: 6.530160e-06	ci right 2.097198e-05	k: 13	n:1060000
Cons ci ratio: 2.178528e-02	ci left: 2.931665e-02	ci right 2.996328e-02	k: 31417	n:1060000
KS ci ratio: 3.789414e-01	ci left: 8.187251e-05	ci right 1.209459e-04	k: 106	n:1060000
MEF2D   1060000 perm   702 sec   (1511 perm/sec)   p_kst 1.000000e-04   p_cons 2.963868e-02   p_joint 1.226415e-05

Joint ci ratio: 1.047657e+00	ci left: 6.469130e-06	ci right 2.077598e-05	k: 13	n:1070000
Cons ci ratio: 2.168726e-02	ci left: 2.930757e-02	ci right 2.995106e-02	k: 31702	n:1070000
KS ci ratio: 3.789416e-01	ci left: 8.110734e-05	ci right 1.198155e-04	k: 106	n:1070000
MEF2D   1070000 perm   713 sec   (1501 perm/sec)   p_kst 9.906542e-05   p_cons 2.962804e-02   p_joint 1.214953e-05

Joint ci ratio: 1.047657e+00	ci left: 6.409230e-06	ci right 2.058361e-05	k: 13	n:1080000
Cons ci ratio: 2.159437e-02	ci left: 2.928853e-02	ci right 2.992881e-02	k: 31976	n:1080000
KS ci ratio: 3.789418e-01	ci left: 8.035634e-05	ci right 1.187061e-04	k: 106	n:1080000
MEF2D   1080000 perm   724 sec   (1492 perm/sec)   p_kst 9.814815e-05   p_cons 2.960741e-02   p_joint 1.203704e-05

Joint ci ratio: 1.047657e+00	ci left: 6.350430e-06	ci right 2.039477e-05	k: 13	n:1090000
Cons ci ratio: 2.149889e-02	ci left: 2.927989e-02	ci right 2.991711e-02	k: 32261	n:1090000
KS ci ratio: 3.789419e-01	ci left: 7.961912e-05	ci right 1.176171e-04	k: 106	n:1090000
MEF2D   1090000 perm   736 sec   (1482 perm/sec)   p_kst 9.724771e-05   p_cons 2.959725e-02   p_joint 1.192661e-05

Joint ci ratio: 1.047657e+00	ci left: 6.292699e-06	ci right 2.020937e-05	k: 13	n:1100000
Cons ci ratio: 2.140467e-02	ci left: 2.927141e-02	ci right 2.990562e-02	k: 32546	n:1100000
KS ci ratio: 3.789421e-01	ci left: 7.889530e-05	ci right 1.165479e-04	k: 106	n:1100000
MEF2D   1100000 perm   747 sec   (1472 perm/sec)   p_kst 9.636364e-05   p_cons 2.958727e-02   p_joint 1.181818e-05

Joint ci ratio: 1.047657e+00	ci left: 6.236008e-06	ci right 2.002730e-05	k: 13	n:1110000
Cons ci ratio: 2.130832e-02	ci left: 2.927205e-02	ci right 2.990339e-02	k: 32841	n:1110000
KS ci ratio: 3.771837e-01	ci left: 7.899982e-05	ci right 1.164840e-04	k: 107	n:1110000
MEF2D   1110000 perm   759 sec   (1463 perm/sec)   p_kst 9.639640e-05   p_cons 2.958649e-02   p_joint 1.171171e-05

Joint ci ratio: 1.047657e+00	ci left: 6.180329e-06	ci right 1.984849e-05	k: 13	n:1120000
Cons ci ratio: 2.121031e-02	ci left: 2.928067e-02	ci right 2.990926e-02	k: 33145	n:1120000
KS ci ratio: 3.754495e-01	ci left: 7.910288e-05	ci right 1.164209e-04	k: 108	n:1120000
MEF2D   1120000 perm   770 sec   (1454 perm/sec)   p_kst 9.642857e-05   p_cons 2.959375e-02   p_joint 1.160714e-05

Joint ci ratio: 1.047657e+00	ci left: 6.125635e-06	ci right 1.967284e-05	k: 13	n:1130000
Cons ci ratio: 2.111298e-02	ci left: 2.929092e-02	ci right 2.991680e-02	k: 33451	n:1130000
KS ci ratio: 3.754496e-01	ci left: 7.840285e-05	ci right 1.153906e-04	k: 108	n:1130000
MEF2D   1130000 perm   782 sec   (1445 perm/sec)   p_kst 9.557522e-05   p_cons 2.960265e-02   p_joint 1.150442e-05

Joint ci ratio: 1.047657e+00	ci left: 6.071902e-06	ci right 1.950027e-05	k: 13	n:1140000
Cons ci ratio: 2.102275e-02	ci left: 2.928528e-02	ci right 2.990834e-02	k: 33739	n:1140000
KS ci ratio: 3.754498e-01	ci left: 7.771510e-05	ci right 1.143784e-04	k: 108	n:1140000
MEF2D   1140000 perm   794 sec   (1436 perm/sec)   p_kst 9.473684e-05   p_cons 2.959561e-02   p_joint 1.140351e-05

Joint ci ratio: 1.047657e+00	ci left: 6.019102e-06	ci right 1.933070e-05	k: 13	n:1150000
Cons ci ratio: 2.094192e-02	ci left: 2.925725e-02	ci right 2.987729e-02	k: 34001	n:1150000
KS ci ratio: 3.754499e-01	ci left: 7.703931e-05	ci right 1.133839e-04	k: 108	n:1150000
MEF2D   1150000 perm   806 sec   (1427 perm/sec)   p_kst 9.391304e-05   p_cons 2.956609e-02   p_joint 1.130435e-05

Joint ci ratio: 1.047657e+00	ci left: 5.967213e-06	ci right 1.916406e-05	k: 13	n:1160000
Cons ci ratio: 2.085041e-02	ci left: 2.926145e-02	ci right 2.987884e-02	k: 34300	n:1160000
KS ci ratio: 3.754501e-01	ci left: 7.637517e-05	ci right 1.124064e-04	k: 108	n:1160000
MEF2D   1160000 perm   818 sec   (1418 perm/sec)   p_kst 9.310345e-05   p_cons 2.956897e-02   p_joint 1.120690e-05

Joint ci ratio: 1.047657e+00	ci left: 5.916212e-06	ci right 1.900026e-05	k: 13	n:1170000
Cons ci ratio: 2.076350e-02	ci left: 2.925622e-02	ci right 2.987090e-02	k: 34588	n:1170000
KS ci ratio: 3.737396e-01	ci left: 7.649662e-05	ci right 1.123805e-04	k: 109	n:1170000
MEF2D   1170000 perm   830 sec   (1409 perm/sec)   p_kst 9.316239e-05   p_cons 2.956239e-02   p_joint 1.111111e-05

Joint ci ratio: 1.047657e+00	ci left: 5.866074e-06	ci right 1.883924e-05	k: 13	n:1180000
Cons ci ratio: 2.067400e-02	ci left: 2.926121e-02	ci right 2.987331e-02	k: 34888	n:1180000
KS ci ratio: 3.737398e-01	ci left: 7.584834e-05	ci right 1.114281e-04	k: 109	n:1180000
MEF2D   1180000 perm   842 sec   (1401 perm/sec)   p_kst 9.237288e-05   p_cons 2.956610e-02   p_joint 1.101695e-05

Joint ci ratio: 1.047657e+00	ci left: 5.816779e-06	ci right 1.868093e-05	k: 13	n:1190000
Cons ci ratio: 2.059348e-02	ci left: 2.924438e-02	ci right 2.985371e-02	k: 35162	n:1190000
KS ci ratio: 3.737399e-01	ci left: 7.521096e-05	ci right 1.104918e-04	k: 109	n:1190000
MEF2D   1190000 perm   855 sec   (1392 perm/sec)   p_kst 9.159664e-05   p_cons 2.954790e-02   p_joint 1.092437e-05

Joint ci ratio: 1.047658e+00	ci left: 5.768306e-06	ci right 1.852526e-05	k: 13	n:1200000
Cons ci ratio: 2.051092e-02	ci left: 2.923612e-02	ci right 2.984282e-02	k: 35446	n:1200000
KS ci ratio: 3.703877e-01	ci left: 7.609503e-05	ci right 1.113928e-04	k: 111	n:1200000
MEF2D   1200000 perm   867 sec   (1384 perm/sec)   p_kst 9.250000e-05   p_cons 2.953833e-02   p_joint 1.083333e-05

Joint ci ratio: 1.047658e+00	ci left: 5.720634e-06	ci right 1.837216e-05	k: 13	n:1210000
Cons ci ratio: 2.042758e-02	ci left: 2.923295e-02	ci right 2.983708e-02	k: 35736	n:1210000
KS ci ratio: 3.671242e-01	ci left: 7.696588e-05	ci right 1.122776e-04	k: 113	n:1210000
MEF2D   1210000 perm   880 sec   (1375 perm/sec)   p_kst 9.338843e-05   p_cons 2.953388e-02   p_joint 1.074380e-05

Joint ci ratio: 1.047658e+00	ci left: 5.673743e-06	ci right 1.822157e-05	k: 13	n:1220000
Cons ci ratio: 2.034408e-02	ci left: 2.923309e-02	ci right 2.983472e-02	k: 36030	n:1220000
KS ci ratio: 3.671243e-01	ci left: 7.633501e-05	ci right 1.113573e-04	k: 113	n:1220000
MEF2D   1220000 perm   892 sec   (1367 perm/sec)   p_kst 9.262295e-05   p_cons 2.953279e-02   p_joint 1.065574e-05

Joint ci ratio: 1.012133e+00	ci left: 6.222721e-06	ci right 1.909718e-05	k: 14	n:1230000
Cons ci ratio: 2.025958e-02	ci left: 2.923889e-02	ci right 2.983812e-02	k: 36331	n:1230000
KS ci ratio: 3.655246e-01	ci left: 7.645257e-05	ci right 1.113395e-04	k: 114	n:1230000
MEF2D   1230000 perm   905 sec   (1359 perm/sec)   p_kst 9.268293e-05   p_cons 2.953740e-02   p_joint 1.138211e-05

Joint ci ratio: 5.018920e-01	ci left: 3.692465e-05	ci right 6.228335e-05	k: 60	n:1240000
Cons ci ratio: 2.017812e-02	ci left: 2.923899e-02	ci right 2.983579e-02	k: 36625	n:1240000
KS ci ratio: 3.639457e-01	ci left: 7.656857e-05	ci right 1.113216e-04	k: 115	n:1240000
MEF2D   1240000 perm   918 sec   (1351 perm/sec)   p_kst 9.274194e-05   p_cons 2.953629e-02   p_joint 4.838710e-05

Joint ci ratio: 4.978280e-01	ci left: 3.732833e-05	ci right 6.268521e-05	k: 61	n:1250000
Cons ci ratio: 2.009735e-02	ci left: 2.923989e-02	ci right 2.983429e-02	k: 36920	n:1250000
KS ci ratio: 3.623870e-01	ci left: 7.668302e-05	ci right 1.113037e-04	k: 116	n:1250000
MEF2D   1250000 perm   931 sec   (1343 perm/sec)   p_kst 9.280000e-05   p_cons 2.953600e-02   p_joint 4.880000e-05

Joint ci ratio: 4.978281e-01	ci left: 3.703207e-05	ci right 6.218771e-05	k: 61	n:1260000
Cons ci ratio: 2.001200e-02	ci left: 2.925658e-02	ci right 2.984876e-02	k: 37235	n:1260000
KS ci ratio: 3.608482e-01	ci left: 7.679597e-05	ci right 1.112858e-04	k: 117	n:1260000
MEF2D   1260000 perm   944 sec   (1335 perm/sec)   p_kst 9.285714e-05   p_cons 2.955159e-02   p_joint 4.841270e-05

Joint ci ratio: 5.103285e-01	ci left: 3.467878e-05	ci right 5.903775e-05	k: 58	n:1270000
Cons ci ratio: 1.992718e-02	ci left: 2.927458e-02	ci right 2.986458e-02	k: 37552	n:1270000
KS ci ratio: 3.578284e-01	ci left: 7.762393e-05	ci right 1.121259e-04	k: 119	n:1270000
MEF2D   1270000 perm   957 sec   (1328 perm/sec)   p_kst 9.370079e-05   p_cons 2.956850e-02   p_joint 4.566929e-05

Joint ci ratio: 5.103286e-01	ci left: 3.440786e-05	ci right 5.857653e-05	k: 58	n:1280000
Cons ci ratio: 1.985424e-02	ci left: 2.926120e-02	ci right 2.984875e-02	k: 37829	n:1280000
KS ci ratio: 3.578285e-01	ci left: 7.701749e-05	ci right 1.112500e-04	k: 119	n:1280000
MEF2D   1280000 perm   970 sec   (1320 perm/sec)   p_kst 9.296875e-05   p_cons 2.955391e-02   p_joint 4.531250e-05

Joint ci ratio: 5.103287e-01	ci left: 3.414113e-05	ci right 5.812245e-05	k: 58	n:1290000
Cons ci ratio: 1.977701e-02	ci left: 2.926269e-02	ci right 2.984796e-02	k: 38125	n:1290000
KS ci ratio: 3.578286e-01	ci left: 7.642045e-05	ci right 1.103876e-04	k: 119	n:1290000
MEF2D   1290000 perm   983 sec   (1313 perm/sec)   p_kst 9.224806e-05   p_cons 2.955426e-02   p_joint 4.496124e-05

Joint ci ratio: 5.103288e-01	ci left: 3.387850e-05	ci right 5.767535e-05	k: 58	n:1300000
Cons ci ratio: 1.970518e-02	ci left: 2.925114e-02	ci right 2.983403e-02	k: 38404	n:1300000
KS ci ratio: 3.563469e-01	ci left: 7.653282e-05	ci right 1.103764e-04	k: 120	n:1300000
MEF2D   1300000 perm   996 sec   (1305 perm/sec)   p_kst 9.230769e-05   p_cons 2.954154e-02   p_joint 4.461538e-05

Joint ci ratio: 5.060580e-01	ci left: 3.428531e-05	ci right 5.809558e-05	k: 59	n:1310000
Cons ci ratio: 1.962654e-02	ci left: 2.926181e-02	ci right 2.984256e-02	k: 38712	n:1310000
KS ci ratio: 3.534378e-01	ci left: 7.733923e-05	ci right 1.111961e-04	k: 122	n:1310000
MEF2D   1310000 perm   1009 sec   (1298 perm/sec)   p_kst 9.312977e-05   p_cons 2.955115e-02   p_joint 4.503817e-05

Joint ci ratio: 5.018928e-01	ci left: 3.468678e-05	ci right 5.850863e-05	k: 60	n:1320000
Cons ci ratio: 1.955580e-02	ci left: 2.925197e-02	ci right 2.983040e-02	k: 38993	n:1320000
KS ci ratio: 3.520097e-01	ci left: 7.744378e-05	ci right 1.111781e-04	k: 123	n:1320000
MEF2D   1320000 perm   1023 sec   (1290 perm/sec)   p_kst 9.318182e-05   p_cons 2.954015e-02   p_joint 4.545455e-05

Joint ci ratio: 4.978287e-01	ci left: 3.508301e-05	ci right 5.891469e-05	k: 61	n:1330000
Cons ci ratio: 1.948532e-02	ci left: 2.924377e-02	ci right 2.981994e-02	k: 39276	n:1330000
KS ci ratio: 3.505989e-01	ci left: 7.754703e-05	ci right 1.111601e-04	k: 124	n:1330000
MEF2D   1330000 perm   1037 sec   (1283 perm/sec)   p_kst 9.323308e-05   p_cons 2.953083e-02   p_joint 4.586466e-05

Joint ci ratio: 4.978288e-01	ci left: 3.482119e-05	ci right 5.847503e-05	k: 61	n:1340000
Cons ci ratio: 1.941837e-02	ci left: 2.922753e-02	ci right 2.980137e-02	k: 39548	n:1340000
KS ci ratio: 3.505990e-01	ci left: 7.696832e-05	ci right 1.103306e-04	k: 124	n:1340000
MEF2D   1340000 perm   1050 sec   (1276 perm/sec)   p_kst 9.253731e-05   p_cons 2.951343e-02   p_joint 4.552239e-05

Joint ci ratio: 4.978289e-01	ci left: 3.456326e-05	ci right 5.804189e-05	k: 61	n:1350000
Cons ci ratio: 1.934610e-02	ci left: 2.922922e-02	ci right 2.980095e-02	k: 39844	n:1350000
KS ci ratio: 3.492049e-01	ci left: 7.707383e-05	ci right 1.103189e-04	k: 125	n:1350000
MEF2D   1350000 perm   1064 sec   (1269 perm/sec)   p_kst 9.259259e-05   p_cons 2.951407e-02   p_joint 4.518519e-05

Joint ci ratio: 7.040445e-01	ci left: 1.488304e-05	ci right 3.149019e-05	k: 30	n:1360000
Cons ci ratio: 1.927018e-02	ci left: 2.924407e-02	ci right 2.981382e-02	k: 40158	n:1360000
KS ci ratio: 3.464659e-01	ci left: 7.784924e-05	ci right 1.111063e-04	k: 127	n:1360000
MEF2D   1360000 perm   1078 sec   (1262 perm/sec)   p_kst 9.338235e-05   p_cons 2.952794e-02   p_joint 2.205882e-05

Joint ci ratio: 6.929563e-01	ci left: 1.537450e-05	ci right 3.211811e-05	k: 31	n:1370000
Cons ci ratio: 1.920151e-02	ci left: 2.923982e-02	ci right 2.980743e-02	k: 40446	n:1370000
KS ci ratio: 3.437903e-01	ci left: 7.861433e-05	ci right 1.118812e-04	k: 129	n:1370000
MEF2D   1370000 perm   1091 sec   (1255 perm/sec)   p_kst 9.416058e-05   p_cons 2.952263e-02   p_joint 2.262774e-05

Joint ci ratio: 6.929564e-01	ci left: 1.526309e-05	ci right 3.188538e-05	k: 31	n:1380000
Cons ci ratio: 1.913283e-02	ci left: 2.923780e-02	ci right 2.980331e-02	k: 40737	n:1380000
KS ci ratio: 3.437904e-01	ci left: 7.804465e-05	ci right 1.110705e-04	k: 129	n:1380000
MEF2D   1380000 perm   1105 sec   (1248 perm/sec)   p_kst 9.347826e-05   p_cons 2.951957e-02   p_joint 2.246377e-05

Joint ci ratio: 6.929564e-01	ci left: 1.515328e-05	ci right 3.165599e-05	k: 31	n:1390000
Cons ci ratio: 1.905987e-02	ci left: 2.925084e-02	ci right 2.981443e-02	k: 41049	n:1390000
KS ci ratio: 3.411759e-01	ci left: 7.879829e-05	ci right 1.118335e-04	k: 131	n:1390000
MEF2D   1390000 perm   1119 sec   (1242 perm/sec)   p_kst 9.424460e-05   p_cons 2.953165e-02   p_joint 2.230216e-05

Joint ci ratio: 6.929565e-01	ci left: 1.504505e-05	ci right 3.142987e-05	k: 31	n:1400000
Cons ci ratio: 1.898797e-02	ci left: 2.926300e-02	ci right 2.982467e-02	k: 41360	n:1400000
KS ci ratio: 3.398908e-01	ci left: 7.888866e-05	ci right 1.118098e-04	k: 132	n:1400000
MEF2D   1400000 perm   1133 sec   (1236 perm/sec)   p_kst 9.428571e-05   p_cons 2.954286e-02   p_joint 2.214286e-05

Joint ci ratio: 6.823762e-01	ci left: 1.552344e-05	ci right 3.203847e-05	k: 32	n:1410000
Cons ci ratio: 1.893139e-02	ci left: 2.923121e-02	ci right 2.979058e-02	k: 41609	n:1410000
KS ci ratio: 3.373636e-01	ci left: 7.962701e-05	ci right 1.125555e-04	k: 134	n:1410000
MEF2D   1410000 perm   1147 sec   (1229 perm/sec)   p_kst 9.503546e-05   p_cons 2.950993e-02   p_joint 2.269504e-05

Joint ci ratio: 6.823762e-01	ci left: 1.541412e-05	ci right 3.181285e-05	k: 32	n:1420000
Cons ci ratio: 1.886811e-02	ci left: 2.922161e-02	ci right 2.977891e-02	k: 41889	n:1420000
KS ci ratio: 3.361210e-01	ci left: 7.971094e-05	ci right 1.125264e-04	k: 135	n:1420000
MEF2D   1420000 perm   1162 sec   (1222 perm/sec)   p_kst 9.507042e-05   p_cons 2.949930e-02   p_joint 2.253521e-05

Joint ci ratio: 6.823763e-01	ci left: 1.530633e-05	ci right 3.159038e-05	k: 32	n:1430000
Cons ci ratio: 1.880111e-02	ci left: 2.922537e-02	ci right 2.978074e-02	k: 42188	n:1430000
KS ci ratio: 3.348920e-01	ci left: 7.979391e-05	ci right 1.124975e-04	k: 136	n:1430000
MEF2D   1430000 perm   1176 sec   (1216 perm/sec)   p_kst 9.510490e-05   p_cons 2.950210e-02   p_joint 2.237762e-05

Joint ci ratio: 6.823764e-01	ci left: 1.520003e-05	ci right 3.137100e-05	k: 32	n:1440000
Cons ci ratio: 1.873527e-02	ci left: 2.922770e-02	ci right 2.978114e-02	k: 42485	n:1440000
KS ci ratio: 3.348922e-01	ci left: 7.923979e-05	ci right 1.117162e-04	k: 136	n:1440000
MEF2D   1440000 perm   1191 sec   (1210 perm/sec)   p_kst 9.444444e-05   p_cons 2.950347e-02   p_joint 2.222222e-05

Joint ci ratio: 6.823764e-01	ci left: 1.509520e-05	ci right 3.115465e-05	k: 32	n:1450000
Cons ci ratio: 1.867191e-02	ci left: 2.922450e-02	ci right 2.977600e-02	k: 42774	n:1450000
KS ci ratio: 3.336766e-01	ci left: 7.932508e-05	ci right 1.116931e-04	k: 137	n:1450000
MEF2D   1450000 perm   1206 sec   (1203 perm/sec)   p_kst 9.448276e-05   p_cons 2.949931e-02   p_joint 2.206897e-05

Joint ci ratio: 6.823765e-01	ci left: 1.499181e-05	ci right 3.094127e-05	k: 32	n:1460000
Cons ci ratio: 1.861075e-02	ci left: 2.921658e-02	ci right 2.976611e-02	k: 43056	n:1460000
KS ci ratio: 3.301075e-01	ci left: 8.066536e-05	ci right 1.131535e-04	k: 140	n:1460000
MEF2D   1460000 perm   1220 sec   (1197 perm/sec)   p_kst 9.589041e-05   p_cons 2.949041e-02   p_joint 2.191781e-05

Joint ci ratio: 6.823765e-01	ci left: 1.488983e-05	ci right 3.073078e-05	k: 32	n:1470000
Cons ci ratio: 1.854644e-02	ci left: 2.922029e-02	ci right 2.976796e-02	k: 43355	n:1470000
KS ci ratio: 3.289431e-01	ci left: 8.074062e-05	ci right 1.131201e-04	k: 141	n:1470000
MEF2D   1470000 perm   1235 sec   (1191 perm/sec)   p_kst 9.591837e-05   p_cons 2.949320e-02   p_joint 2.176871e-05

Joint ci ratio: 6.722665e-01	ci left: 1.534848e-05	ci right 3.131355e-05	k: 33	n:1480000
Cons ci ratio: 1.848322e-02	ci left: 2.922260e-02	ci right 2.976843e-02	k: 43652	n:1480000
KS ci ratio: 3.266507e-01	ci left: 8.143524e-05	ci right 1.138179e-04	k: 143	n:1480000
MEF2D   1480000 perm   1250 sec   (1184 perm/sec)   p_kst 9.662162e-05   p_cons 2.949459e-02   p_joint 2.229730e-05

Joint ci ratio: 6.722666e-01	ci left: 1.524547e-05	ci right 3.110340e-05	k: 33	n:1490000
Cons ci ratio: 1.842497e-02	ci left: 2.921152e-02	ci right 2.975541e-02	k: 43929	n:1490000
KS ci ratio: 3.266508e-01	ci left: 8.088869e-05	ci right 1.130540e-04	k: 143	n:1490000
MEF2D   1490000 perm   1265 sec   (1178 perm/sec)   p_kst 9.597315e-05   p_cons 2.948255e-02   p_joint 2.214765e-05

Joint ci ratio: 6.722666e-01	ci left: 1.514383e-05	ci right 3.089604e-05	k: 33	n:1500000
Cons ci ratio: 1.836534e-02	ci left: 2.920657e-02	ci right 2.974858e-02	k: 44215	n:1500000
KS ci ratio: 3.266509e-01	ci left: 8.034943e-05	ci right 1.123003e-04	k: 143	n:1500000
MEF2D   1500000 perm   1280 sec   (1172 perm/sec)   p_kst 9.533333e-05   p_cons 2.947667e-02   p_joint 2.200000e-05

Joint ci ratio: 6.722667e-01	ci left: 1.504354e-05	ci right 3.069143e-05	k: 33	n:1510000
Cons ci ratio: 1.830269e-02	ci left: 2.921289e-02	ci right 2.975315e-02	k: 44518	n:1510000
KS ci ratio: 3.266510e-01	ci left: 7.981731e-05	ci right 1.115566e-04	k: 143	n:1510000
MEF2D   1510000 perm   1294 sec   (1167 perm/sec)   p_kst 9.470199e-05   p_cons 2.948212e-02   p_joint 2.185430e-05

Joint ci ratio: 6.625931e-01	ci left: 1.549083e-05	ci right 3.125749e-05	k: 34	n:1520000
Cons ci ratio: 1.824990e-02	ci left: 2.919031e-02	ci right 2.972859e-02	k: 44777	n:1520000
KS ci ratio: 3.255226e-01	ci left: 7.989624e-05	ci right 1.115343e-04	k: 144	n:1520000
MEF2D   1520000 perm   1309 sec   (1161 perm/sec)   p_kst 9.473684e-05   p_cons 2.945855e-02   p_joint 2.236842e-05

Joint ci ratio: 6.625931e-01	ci left: 1.538958e-05	ci right 3.105319e-05	k: 34	n:1530000
Cons ci ratio: 1.819070e-02	ci left: 2.918951e-02	ci right 2.972600e-02	k: 45069	n:1530000
KS ci ratio: 3.244059e-01	ci left: 7.997432e-05	ci right 1.115120e-04	k: 145	n:1530000
MEF2D   1530000 perm   1324 sec   (1155 perm/sec)   p_kst 9.477124e-05   p_cons 2.945686e-02   p_joint 2.222222e-05

Joint ci ratio: 6.625932e-01	ci left: 1.528965e-05	ci right 3.085155e-05	k: 34	n:1540000
Cons ci ratio: 1.812960e-02	ci left: 2.919647e-02	ci right 2.973127e-02	k: 45373	n:1540000
KS ci ratio: 3.244060e-01	ci left: 7.945501e-05	ci right 1.107879e-04	k: 145	n:1540000
MEF2D   1540000 perm   1340 sec   (1149 perm/sec)   p_kst 9.415584e-05   p_cons 2.946299e-02   p_joint 2.207792e-05

Joint ci ratio: 6.533255e-01	ci left: 1.572830e-05	ci right 3.140407e-05	k: 35	n:1550000
Cons ci ratio: 1.806973e-02	ci left: 2.920142e-02	ci right 2.973453e-02	k: 45674	n:1550000
KS ci ratio: 3.244061e-01	ci left: 7.894239e-05	ci right 1.100732e-04	k: 145	n:1550000
MEF2D   1550000 perm   1355 sec   (1144 perm/sec)   p_kst 9.354839e-05   p_cons 2.946710e-02   p_joint 2.258065e-05

Joint ci ratio: 6.533256e-01	ci left: 1.562747e-05	ci right 3.120277e-05	k: 35	n:1560000
Cons ci ratio: 1.800944e-02	ci left: 2.920951e-02	ci right 2.974096e-02	k: 45980	n:1560000
KS ci ratio: 3.244062e-01	ci left: 7.843635e-05	ci right 1.093676e-04	k: 145	n:1560000
MEF2D   1560000 perm   1371 sec   (1138 perm/sec)   p_kst 9.294872e-05   p_cons 2.947436e-02   p_joint 2.243590e-05

Joint ci ratio: 6.533256e-01	ci left: 1.552793e-05	ci right 3.100402e-05	k: 35	n:1570000
Cons ci ratio: 1.795534e-02	ci left: 2.919973e-02	ci right 2.972940e-02	k: 46258	n:1570000
KS ci ratio: 3.222067e-01	ci left: 7.910727e-05	ci right 1.100479e-04	k: 147	n:1570000
MEF2D   1570000 perm   1386 sec   (1132 perm/sec)   p_kst 9.363057e-05   p_cons 2.946369e-02   p_joint 2.229299e-05

Joint ci ratio: 6.533257e-01	ci left: 1.542966e-05	ci right 3.080780e-05	k: 35	n:1580000
Cons ci ratio: 1.789242e-02	ci left: 2.921970e-02	ci right 2.974785e-02	k: 46583	n:1580000
KS ci ratio: 3.211237e-01	ci left: 7.918841e-05	ci right 1.100352e-04	k: 148	n:1580000
MEF2D   1580000 perm   1402 sec   (1127 perm/sec)   p_kst 9.367089e-05   p_cons 2.948291e-02   p_joint 2.215190e-05

Joint ci ratio: 6.533257e-01	ci left: 1.533261e-05	ci right 3.061404e-05	k: 35	n:1590000
Cons ci ratio: 1.783387e-02	ci left: 2.922752e-02	ci right 2.975407e-02	k: 46889	n:1590000
KS ci ratio: 3.211238e-01	ci left: 7.869036e-05	ci right 1.093432e-04	k: 148	n:1590000
MEF2D   1590000 perm   1418 sec   (1121 perm/sec)   p_kst 9.308176e-05   p_cons 2.948994e-02   p_joint 2.201258e-05

Joint ci ratio: 6.444364e-01	ci left: 1.575877e-05	ci right 3.114935e-05	k: 36	n:1600000
Cons ci ratio: 1.777726e-02	ci left: 2.923089e-02	ci right 2.975581e-02	k: 47188	n:1600000
KS ci ratio: 3.189899e-01	ci left: 7.934815e-05	ci right 1.100098e-04	k: 150	n:1600000
MEF2D   1600000 perm   1434 sec   (1116 perm/sec)   p_kst 9.375000e-05   p_cons 2.949250e-02   p_joint 2.250000e-05

Joint ci ratio: 6.444364e-01	ci left: 1.566089e-05	ci right 3.095588e-05	k: 36	n:1610000
Cons ci ratio: 1.772003e-02	ci left: 2.923794e-02	ci right 2.976127e-02	k: 47493	n:1610000
KS ci ratio: 3.179389e-01	ci left: 7.942678e-05	ci right 1.099971e-04	k: 151	n:1610000
MEF2D   1610000 perm   1450 sec   (1110 perm/sec)   p_kst 9.378882e-05   p_cons 2.949876e-02   p_joint 2.236025e-05

Joint ci ratio: 6.444365e-01	ci left: 1.556422e-05	ci right 3.076479e-05	k: 36	n:1620000
Cons ci ratio: 1.766583e-02	ci left: 2.923690e-02	ci right 2.975861e-02	k: 47785	n:1620000
KS ci ratio: 3.158675e-01	ci left: 8.007288e-05	ci right 1.106506e-04	k: 153	n:1620000
MEF2D   1620000 perm   1466 sec   (1105 perm/sec)   p_kst 9.444444e-05   p_cons 2.949691e-02   p_joint 2.222222e-05

Joint ci ratio: 6.444365e-01	ci left: 1.546873e-05	ci right 3.057605e-05	k: 36	n:1630000
Cons ci ratio: 1.760759e-02	ci left: 2.925055e-02	ci right 2.977076e-02	k: 48101	n:1630000
KS ci ratio: 3.158676e-01	ci left: 7.958163e-05	ci right 1.099717e-04	k: 153	n:1630000
MEF2D   1630000 perm   1483 sec   (1099 perm/sec)   p_kst 9.386503e-05   p_cons 2.950982e-02   p_joint 2.208589e-05

Joint ci ratio: 6.359004e-01	ci left: 1.588506e-05	ci right 3.109720e-05	k: 37	n:1640000
Cons ci ratio: 1.754936e-02	ci left: 2.926585e-02	ci right 2.978459e-02	k: 48420	n:1640000
KS ci ratio: 3.148470e-01	ci left: 7.965788e-05	ci right 1.099590e-04	k: 154	n:1640000
MEF2D   1640000 perm   1499 sec   (1094 perm/sec)   p_kst 9.390244e-05   p_cons 2.952439e-02   p_joint 2.256098e-05

Joint ci ratio: 6.359005e-01	ci left: 1.578878e-05	ci right 3.090873e-05	k: 37	n:1650000
Cons ci ratio: 1.749633e-02	ci left: 2.926588e-02	ci right 2.978304e-02	k: 48714	n:1650000
KS ci ratio: 3.138362e-01	ci left: 7.973336e-05	ci right 1.099463e-04	k: 155	n:1650000
MEF2D   1650000 perm   1515 sec   (1089 perm/sec)   p_kst 9.393939e-05   p_cons 2.952364e-02   p_joint 2.242424e-05

Joint ci ratio: 6.359005e-01	ci left: 1.569367e-05	ci right 3.072254e-05	k: 37	n:1660000
Cons ci ratio: 1.743864e-02	ci left: 2.928271e-02	ci right 2.979845e-02	k: 49036	n:1660000
KS ci ratio: 3.138363e-01	ci left: 7.925304e-05	ci right 1.092840e-04	k: 155	n:1660000
MEF2D   1660000 perm   1532 sec   (1084 perm/sec)   p_kst 9.337349e-05   p_cons 2.953976e-02   p_joint 2.228916e-05

Joint ci ratio: 6.359005e-01	ci left: 1.559970e-05	ci right 3.053857e-05	k: 37	n:1670000
Cons ci ratio: 1.738443e-02	ci left: 2.928981e-02	ci right 2.980404e-02	k: 49342	n:1670000
KS ci ratio: 3.128353e-01	ci left: 7.933019e-05	ci right 1.092754e-04	k: 156	n:1670000
MEF2D   1670000 perm   1548 sec   (1079 perm/sec)   p_kst 9.341317e-05   p_cons 2.954611e-02   p_joint 2.215569e-05

Joint ci ratio: 6.359006e-01	ci left: 1.550684e-05	ci right 3.035679e-05	k: 37	n:1680000
Cons ci ratio: 1.733576e-02	ci left: 2.928022e-02	ci right 2.979283e-02	k: 49620	n:1680000
KS ci ratio: 3.108614e-01	ci left: 7.995531e-05	ci right 1.099082e-04	k: 158	n:1680000
MEF2D   1680000 perm   1565 sec   (1074 perm/sec)   p_kst 9.404762e-05   p_cons 2.953571e-02   p_joint 2.202381e-05

Joint ci ratio: 6.359006e-01	ci left: 1.541508e-05	ci right 3.017717e-05	k: 37	n:1690000
Cons ci ratio: 1.728357e-02	ci left: 2.928371e-02	ci right 2.979483e-02	k: 49920	n:1690000
KS ci ratio: 3.108615e-01	ci left: 7.948220e-05	ci right 1.092579e-04	k: 158	n:1690000
MEF2D   1690000 perm   1582 sec   (1069 perm/sec)   p_kst 9.349112e-05   p_cons 2.953846e-02   p_joint 2.189349e-05

Joint ci ratio: 6.359007e-01	ci left: 1.532441e-05	ci right 2.999966e-05	k: 37	n:1700000
Cons ci ratio: 1.722831e-02	ci left: 2.929888e-02	ci right 2.980861e-02	k: 50240	n:1700000
KS ci ratio: 3.098885e-01	ci left: 7.955708e-05	ci right 1.092491e-04	k: 159	n:1700000
MEF2D   1700000 perm   1599 sec   (1063 perm/sec)   p_kst 9.352941e-05   p_cons 2.955294e-02   p_joint 2.176471e-05

Joint ci ratio: 6.359007e-01	ci left: 1.523479e-05	ci right 2.982422e-05	k: 37	n:1710000
Cons ci ratio: 1.717883e-02	ci left: 2.929640e-02	ci right 2.980461e-02	k: 50530	n:1710000
KS ci ratio: 3.098886e-01	ci left: 7.909184e-05	ci right 1.086102e-04	k: 159	n:1710000
MEF2D   1710000 perm   1616 sec   (1058 perm/sec)   p_kst 9.298246e-05   p_cons 2.954971e-02   p_joint 2.163743e-05

Joint ci ratio: 6.359008e-01	ci left: 1.514622e-05	ci right 2.965082e-05	k: 37	n:1720000
Cons ci ratio: 1.712925e-02	ci left: 2.929569e-02	ci right 2.980241e-02	k: 50823	n:1720000
KS ci ratio: 3.098887e-01	ci left: 7.863200e-05	ci right 1.079788e-04	k: 159	n:1720000
MEF2D   1720000 perm   1633 sec   (1053 perm/sec)   p_kst 9.244186e-05   p_cons 2.954826e-02   p_joint 2.151163e-05

Joint ci ratio: 6.359008e-01	ci left: 1.505866e-05	ci right 2.947943e-05	k: 37	n:1730000
Cons ci ratio: 1.708372e-02	ci left: 2.928290e-02	ci right 2.978804e-02	k: 51095	n:1730000
KS ci ratio: 3.089248e-01	ci left: 7.871064e-05	ci right 1.079774e-04	k: 160	n:1730000
MEF2D   1730000 perm   1650 sec   (1048 perm/sec)   p_kst 9.248555e-05   p_cons 2.953468e-02   p_joint 2.138728e-05

Joint ci ratio: 6.359008e-01	ci left: 1.497212e-05	ci right 2.931001e-05	k: 37	n:1740000
Cons ci ratio: 1.704248e-02	ci left: 2.925710e-02	ci right 2.976056e-02	k: 51344	n:1740000
KS ci ratio: 3.089249e-01	ci left: 7.825827e-05	ci right 1.073568e-04	k: 160	n:1740000
MEF2D   1740000 perm   1668 sec   (1043 perm/sec)   p_kst 9.195402e-05   p_cons 2.950805e-02   p_joint 2.126437e-05

Joint ci ratio: 6.359009e-01	ci left: 1.488656e-05	ci right 2.914253e-05	k: 37	n:1750000
Cons ci ratio: 1.699610e-02	ci left: 2.924980e-02	ci right 2.975176e-02	k: 51625	n:1750000
KS ci ratio: 3.079699e-01	ci left: 7.833829e-05	ci right 1.073589e-04	k: 161	n:1750000
MEF2D   1750000 perm   1685 sec   (1038 perm/sec)   p_kst 9.200000e-05   p_cons 2.950000e-02   p_joint 2.114286e-05

Joint ci ratio: 6.359009e-01	ci left: 1.480198e-05	ci right 2.897695e-05	k: 37	n:1760000
Cons ci ratio: 1.694523e-02	ci left: 2.925900e-02	ci right 2.975959e-02	k: 51935	n:1760000
KS ci ratio: 3.079700e-01	ci left: 7.789318e-05	ci right 1.067489e-04	k: 161	n:1760000
MEF2D   1760000 perm   1703 sec   (1034 perm/sec)   p_kst 9.147727e-05   p_cons 2.950852e-02   p_joint 2.102273e-05

Joint ci ratio: 6.359010e-01	ci left: 1.471835e-05	ci right 2.881323e-05	k: 37	n:1770000
Cons ci ratio: 1.689431e-02	ci left: 2.926979e-02	ci right 2.976904e-02	k: 52248	n:1770000
KS ci ratio: 3.070239e-01	ci left: 7.797449e-05	ci right 1.067542e-04	k: 162	n:1770000
MEF2D   1770000 perm   1720 sec   (1029 perm/sec)   p_kst 9.152542e-05   p_cons 2.951864e-02   p_joint 2.090395e-05

Joint ci ratio: 7.543984e-01	ci left: 9.541630e-06	ci right 2.140219e-05	k: 26	n:1780000
Cons ci ratio: 1.684996e-02	ci left: 2.925975e-02	ci right 2.975751e-02	k: 52524	n:1780000
KS ci ratio: 3.060864e-01	ci left: 7.805502e-05	ci right 1.067594e-04	k: 163	n:1780000
MEF2D   1780000 perm   1737 sec   (1024 perm/sec)   p_kst 9.157303e-05   p_cons 2.950787e-02   p_joint 1.460674e-05

Joint ci ratio: 7.408044e-01	ci left: 9.940341e-06	ci right 2.194606e-05	k: 27	n:1790000
Cons ci ratio: 1.680038e-02	ci left: 2.926874e-02	ci right 2.976518e-02	k: 52834	n:1790000
KS ci ratio: 3.033245e-01	ci left: 7.916683e-05	ci right 1.079666e-04	k: 166	n:1790000
MEF2D   1790000 perm   1755 sec   (1020 perm/sec)   p_kst 9.273743e-05   p_cons 2.951620e-02   p_joint 1.508380e-05

Joint ci ratio: 7.408044e-01	ci left: 9.885117e-06	ci right 2.182414e-05	k: 27	n:1800000
Cons ci ratio: 1.675270e-02	ci left: 2.927266e-02	ci right 2.976774e-02	k: 53135	n:1800000
KS ci ratio: 3.015242e-01	ci left: 7.975383e-05	ci right 1.085620e-04	k: 168	n:1800000
MEF2D   1800000 perm   1773 sec   (1015 perm/sec)   p_kst 9.333333e-05   p_cons 2.951944e-02   p_joint 1.500000e-05

Joint ci ratio: 7.408044e-01	ci left: 9.830503e-06	ci right 2.170356e-05	k: 27	n:1810000
Cons ci ratio: 1.670430e-02	ci left: 2.928039e-02	ci right 2.977416e-02	k: 53443	n:1810000
KS ci ratio: 3.006361e-01	ci left: 7.982396e-05	ci right 1.085563e-04	k: 169	n:1810000
MEF2D   1810000 perm   1791 sec   (1011 perm/sec)   p_kst 9.337017e-05   p_cons 2.952652e-02   p_joint 1.491713e-05

Joint ci ratio: 7.408045e-01	ci left: 9.776489e-06	ci right 2.158431e-05	k: 27	n:1820000
Cons ci ratio: 1.665855e-02	ci left: 2.928037e-02	ci right 2.977278e-02	k: 53737	n:1820000
KS ci ratio: 2.997557e-01	ci left: 7.989344e-05	ci right 1.085505e-04	k: 170	n:1820000
MEF2D   1820000 perm   1809 sec   (1006 perm/sec)   p_kst 9.340659e-05   p_cons 2.952582e-02   p_joint 1.483516e-05

Joint ci ratio: 7.408045e-01	ci left: 9.723066e-06	ci right 2.146637e-05	k: 27	n:1830000
Cons ci ratio: 1.661238e-02	ci left: 2.928308e-02	ci right 2.977415e-02	k: 54036	n:1830000
KS ci ratio: 2.997558e-01	ci left: 7.945686e-05	ci right 1.079574e-04	k: 170	n:1830000
MEF2D   1830000 perm   1827 sec   (1002 perm/sec)   p_kst 9.289617e-05   p_cons 2.952787e-02   p_joint 1.475410e-05

Joint ci ratio: 7.408045e-01	ci left: 9.670223e-06	ci right 2.134970e-05	k: 27	n:1840000
Cons ci ratio: 1.656785e-02	ci left: 2.928143e-02	ci right 2.977114e-02	k: 54327	n:1840000
KS ci ratio: 2.980180e-01	ci left: 8.003050e-05	ci right 1.085389e-04	k: 172	n:1840000
MEF2D   1840000 perm   1845 sec   (997 perm/sec)   p_kst 9.347826e-05   p_cons 2.952554e-02   p_joint 1.467391e-05

Joint ci ratio: 7.279198e-01	ci left: 1.005721e-05	ci right 2.187441e-05	k: 28	n:1850000
Cons ci ratio: 1.652227e-02	ci left: 2.928464e-02	ci right 2.977305e-02	k: 54627	n:1850000
KS ci ratio: 2.971604e-01	ci left: 8.009809e-05	ci right 1.085329e-04	k: 173	n:1850000
MEF2D   1850000 perm   1863 sec   (993 perm/sec)   p_kst 9.351351e-05   p_cons 2.952811e-02   p_joint 1.513514e-05

Joint ci ratio: 7.279199e-01	ci left: 1.000314e-05	ci right 2.175681e-05	k: 28	n:1860000
Cons ci ratio: 1.648031e-02	ci left: 2.927658e-02	ci right 2.976360e-02	k: 54906	n:1860000
KS ci ratio: 2.963101e-01	ci left: 8.016507e-05	ci right 1.085270e-04	k: 174	n:1860000
MEF2D   1860000 perm   1882 sec   (989 perm/sec)   p_kst 9.354839e-05   p_cons 2.951935e-02   p_joint 1.505376e-05

Joint ci ratio: 7.279199e-01	ci left: 9.949646e-06	ci right 2.164046e-05	k: 28	n:1870000
Cons ci ratio: 1.643622e-02	ci left: 2.927712e-02	ci right 2.976284e-02	k: 55201	n:1870000
KS ci ratio: 2.963102e-01	ci left: 7.973638e-05	ci right 1.079466e-04	k: 174	n:1870000
MEF2D   1870000 perm   1899 sec   (984 perm/sec)   p_kst 9.304813e-05   p_cons 2.951925e-02   p_joint 1.497326e-05

Joint ci ratio: 7.279199e-01	ci left: 9.896722e-06	ci right 2.152535e-05	k: 28	n:1880000
Cons ci ratio: 1.639126e-02	ci left: 2.928190e-02	ci right 2.976636e-02	k: 55504	n:1880000
KS ci ratio: 2.946313e-01	ci left: 8.029724e-05	ci right 1.085149e-04	k: 176	n:1880000
MEF2D   1880000 perm   1918 sec   (980 perm/sec)   p_kst 9.361702e-05   p_cons 2.952340e-02   p_joint 1.489362e-05

Joint ci ratio: 7.279199e-01	ci left: 9.844359e-06	ci right 2.141146e-05	k: 28	n:1890000
Cons ci ratio: 1.634787e-02	ci left: 2.928242e-02	ci right 2.976559e-02	k: 55799	n:1890000
KS ci ratio: 2.938025e-01	ci left: 8.036245e-05	ci right 1.085088e-04	k: 177	n:1890000
MEF2D   1890000 perm   1936 sec   (976 perm/sec)   p_kst 9.365079e-05   p_cons 2.952328e-02   p_joint 1.481481e-05

Joint ci ratio: 7.156850e-01	ci left: 1.022200e-05	ci right 2.192037e-05	k: 29	n:1900000
Cons ci ratio: 1.630199e-02	ci left: 2.929289e-02	ci right 2.977486e-02	k: 56113	n:1900000
KS ci ratio: 2.929807e-01	ci left: 8.042707e-05	ci right 1.085026e-04	k: 178	n:1900000
MEF2D   1900000 perm   1955 sec   (972 perm/sec)   p_kst 9.368421e-05   p_cons 2.953316e-02   p_joint 1.526316e-05

Joint ci ratio: 7.156850e-01	ci left: 1.016848e-05	ci right 2.180560e-05	k: 29	n:1910000
Cons ci ratio: 1.625931e-02	ci left: 2.929335e-02	ci right 2.977405e-02	k: 56408	n:1910000
KS ci ratio: 2.921657e-01	ci left: 8.049113e-05	ci right 1.084964e-04	k: 179	n:1910000
MEF2D   1910000 perm   1974 sec   (968 perm/sec)   p_kst 9.371728e-05   p_cons 2.953298e-02   p_joint 1.518325e-05

Joint ci ratio: 7.156850e-01	ci left: 1.011552e-05	ci right 2.169203e-05	k: 29	n:1920000
Cons ci ratio: 1.717011e-02	ci left: 2.620273e-02	ci right 2.665704e-02	k: 50744	n:1920000
KS ci ratio: 2.913575e-01	ci left: 8.055463e-05	ci right 1.084902e-04	k: 180	n:1920000
MEF2D   1920000 perm   1993 sec   (964 perm/sec)   p_kst 9.375000e-05   p_cons 2.642917e-02   p_joint 1.510417e-05

Joint ci ratio: 7.156851e-01	ci left: 1.006311e-05	ci right 2.157964e-05	k: 29	n:1930000
Cons ci ratio: 1.712510e-02	ci left: 2.620471e-02	ci right 2.665785e-02	k: 51011	n:1930000
KS ci ratio: 2.913576e-01	ci left: 8.013724e-05	ci right 1.079280e-04	k: 180	n:1930000
MEF2D   1930000 perm   2012 sec   (959 perm/sec)   p_kst 9.326425e-05   p_cons 2.643057e-02   p_joint 1.502591e-05

Joint ci ratio: 7.156851e-01	ci left: 1.001124e-05	ci right 2.146840e-05	k: 29	n:1940000
Cons ci ratio: 1.707532e-02	ci left: 2.622207e-02	ci right 2.667419e-02	k: 51308	n:1940000
KS ci ratio: 2.897610e-01	ci left: 8.067997e-05	ci right 1.084775e-04	k: 182	n:1940000
MEF2D   1940000 perm   2031 sec   (955 perm/sec)   p_kst 9.381443e-05   p_cons 2.644742e-02   p_joint 1.494845e-05

Joint ci ratio: 7.156851e-01	ci left: 9.959896e-06	ci right 2.135831e-05	k: 29	n:1950000
Cons ci ratio: 1.703529e-02	ci left: 2.621117e-02	ci right 2.666203e-02	k: 51550	n:1950000
KS ci ratio: 2.866450e-01	ci left: 8.216926e-05	ci right 1.101204e-04	k: 186	n:1950000
MEF2D   1950000 perm   2050 sec   (951 perm/sec)   p_kst 9.538462e-05   p_cons 2.643590e-02   p_joint 1.487179e-05

Joint ci ratio: 7.156851e-01	ci left: 9.909080e-06	ci right 2.124934e-05	k: 29	n:1960000
Cons ci ratio: 1.699454e-02	ci left: 2.620344e-02	ci right 2.665307e-02	k: 51798	n:1960000
KS ci ratio: 2.858816e-01	ci left: 8.222361e-05	ci right 1.101053e-04	k: 187	n:1960000
MEF2D   1960000 perm   2069 sec   (947 perm/sec)   p_kst 9.540816e-05   p_cons 2.642755e-02   p_joint 1.479592e-05

Joint ci ratio: 7.156852e-01	ci left: 9.858780e-06	ci right 2.114147e-05	k: 29	n:1970000
Cons ci ratio: 1.694872e-02	ci left: 2.621195e-02	ci right 2.666051e-02	k: 52078	n:1970000
KS ci ratio: 2.843729e-01	ci left: 8.274887e-05	ci right 1.106340e-04	k: 189	n:1970000
MEF2D   1970000 perm   2088 sec   (944 perm/sec)   p_kst 9.593909e-05   p_cons 2.643553e-02   p_joint 1.472081e-05

Joint ci ratio: 7.040471e-01	ci left: 1.022269e-05	ci right 2.162966e-05	k: 30	n:1980000
Cons ci ratio: 1.690675e-02	ci left: 2.620982e-02	ci right 2.665722e-02	k: 52337	n:1980000
KS ci ratio: 2.821540e-01	ci left: 8.373848e-05	ci right 1.116977e-04	k: 192	n:1980000
MEF2D   1980000 perm   2106 sec   (940 perm/sec)   p_kst 9.696970e-05   p_cons 2.643283e-02   p_joint 1.515152e-05

Joint ci ratio: 7.040471e-01	ci left: 1.017132e-05	ci right 2.152097e-05	k: 30	n:1990000
Cons ci ratio: 1.686263e-02	ci left: 2.621522e-02	ci right 2.666153e-02	k: 52611	n:1990000
KS ci ratio: 2.821540e-01	ci left: 8.331768e-05	ci right 1.111364e-04	k: 192	n:1990000
MEF2D   1990000 perm   2125 sec   (937 perm/sec)   p_kst 9.648241e-05   p_cons 2.643769e-02   p_joint 1.507538e-05

Joint ci ratio: 7.040472e-01	ci left: 1.012046e-05	ci right 2.141336e-05	k: 30	n:2000000
Cons ci ratio: 1.681950e-02	ci left: 2.621858e-02	ci right 2.666379e-02	k: 52881	n:2000000
KS ci ratio: 2.814259e-01	ci left: 8.336576e-05	ci right 1.111160e-04	k: 193	n:2000000
MEF2D   2000000 perm   2144 sec   (933 perm/sec)   p_kst 9.650000e-05   p_cons 2.644050e-02   p_joint 1.500000e-05

Joint ci ratio: 7.040472e-01	ci left: 1.007011e-05	ci right 2.130683e-05	k: 30	n:2010000
Cons ci ratio: 1.677703e-02	ci left: 2.622091e-02	ci right 2.666503e-02	k: 53149	n:2010000
KS ci ratio: 2.814259e-01	ci left: 8.295101e-05	ci right 1.105632e-04	k: 193	n:2010000
MEF2D   2010000 perm   2162 sec   (930 perm/sec)   p_kst 9.601990e-05   p_cons 2.644229e-02   p_joint 1.492537e-05

Joint ci ratio: 7.040472e-01	ci left: 1.002026e-05	ci right 2.120135e-05	k: 30	n:2020000
Cons ci ratio: 1.673552e-02	ci left: 2.622125e-02	ci right 2.666427e-02	k: 53413	n:2020000
KS ci ratio: 2.807034e-01	ci left: 8.300052e-05	ci right 1.105457e-04	k: 194	n:2020000
MEF2D   2020000 perm   2181 sec   (926 perm/sec)   p_kst 9.603960e-05   p_cons 2.644208e-02   p_joint 1.485149e-05

Joint ci ratio: 7.040472e-01	ci left: 9.970895e-06	ci right 2.109691e-05	k: 30	n:2030000
Cons ci ratio: 1.669623e-02	ci left: 2.621570e-02	ci right 2.665757e-02	k: 53665	n:2030000
KS ci ratio: 2.807035e-01	ci left: 8.259165e-05	ci right 1.100011e-04	k: 194	n:2030000
MEF2D   2030000 perm   2200 sec   (923 perm/sec)   p_kst 9.556650e-05   p_cons 2.643596e-02   p_joint 1.477833e-05

Joint ci ratio: 7.040473e-01	ci left: 9.922018e-06	ci right 2.099350e-05	k: 30	n:2040000
Cons ci ratio: 1.665611e-02	ci left: 2.621362e-02	ci right 2.665439e-02	k: 53924	n:2040000
KS ci ratio: 2.792749e-01	ci left: 8.309835e-05	ci right 1.105110e-04	k: 196	n:2040000
MEF2D   2040000 perm   2219 sec   (919 perm/sec)   p_kst 9.607843e-05   p_cons 2.643333e-02   p_joint 1.470588e-05

Joint ci ratio: 6.929591e-01	ci left: 1.027465e-05	ci right 2.146433e-05	k: 31	n:2050000
Cons ci ratio: 1.661171e-02	ci left: 2.622566e-02	ci right 2.666544e-02	k: 54212	n:2050000
KS ci ratio: 2.764819e-01	ci left: 8.450828e-05	ci right 1.120587e-04	k: 200	n:2050000
MEF2D   2050000 perm   2238 sec   (916 perm/sec)   p_kst 9.756098e-05   p_cons 2.644488e-02   p_joint 1.512195e-05

Joint ci ratio: 6.823788e-01	ci left: 1.062525e-05	ci right 2.192928e-05	k: 32	n:2060000
Cons ci ratio: 1.656860e-02	ci left: 2.623468e-02	ci right 2.667345e-02	k: 54494	n:2060000
KS ci ratio: 2.757966e-01	ci left: 8.454987e-05	ci right 1.120337e-04	k: 201	n:2060000
MEF2D   2060000 perm   2256 sec   (913 perm/sec)   p_kst 9.757282e-05   p_cons 2.645340e-02   p_joint 1.553398e-05

Joint ci ratio: 6.823788e-01	ci left: 1.057392e-05	ci right 2.182334e-05	k: 32	n:2070000
Cons ci ratio: 1.653079e-02	ci left: 2.622821e-02	ci right 2.666587e-02	k: 54744	n:2070000
KS ci ratio: 2.744413e-01	ci left: 8.504096e-05	ci right 1.125251e-04	k: 203	n:2070000
MEF2D   2070000 perm   2275 sec   (910 perm/sec)   p_kst 9.806763e-05   p_cons 2.644638e-02   p_joint 1.545894e-05

Joint ci ratio: 6.823788e-01	ci left: 1.052309e-05	ci right 2.171842e-05	k: 32	n:2080000
Cons ci ratio: 1.649292e-02	ci left: 2.622277e-02	ci right 2.665932e-02	k: 54996	n:2080000
KS ci ratio: 2.744414e-01	ci left: 8.463211e-05	ci right 1.119841e-04	k: 203	n:2080000
MEF2D   2080000 perm   2294 sec   (907 perm/sec)   p_kst 9.759615e-05   p_cons 2.644038e-02   p_joint 1.538462e-05

Joint ci ratio: 6.823789e-01	ci left: 1.047274e-05	ci right 2.161450e-05	k: 32	n:2090000
Cons ci ratio: 1.645731e-02	ci left: 2.621118e-02	ci right 2.664659e-02	k: 55235	n:2090000
KS ci ratio: 2.744414e-01	ci left: 8.422717e-05	ci right 1.114483e-04	k: 203	n:2090000
MEF2D   2090000 perm   2314 sec   (903 perm/sec)   p_kst 9.712919e-05   p_cons 2.642823e-02   p_joint 1.531100e-05

Joint ci ratio: 6.823789e-01	ci left: 1.042287e-05	ci right 2.151158e-05	k: 32	n:2100000
Cons ci ratio: 1.641690e-02	ci left: 2.621536e-02	ci right 2.664976e-02	k: 55507	n:2100000
KS ci ratio: 2.737712e-01	ci left: 8.426955e-05	ci right 1.114265e-04	k: 204	n:2100000
MEF2D   2100000 perm   2333 sec   (900 perm/sec)   p_kst 9.714286e-05   p_cons 2.643190e-02   p_joint 1.523810e-05

Joint ci ratio: 6.823789e-01	ci left: 1.037347e-05	ci right 2.140963e-05	k: 32	n:2110000
Cons ci ratio: 1.637393e-02	ci left: 2.622846e-02	ci right 2.666194e-02	k: 55798	n:2110000
KS ci ratio: 2.737713e-01	ci left: 8.387017e-05	ci right 1.108984e-04	k: 204	n:2110000
MEF2D   2110000 perm   2353 sec   (897 perm/sec)   p_kst 9.668246e-05   p_cons 2.644455e-02   p_joint 1.516588e-05

Joint ci ratio: 6.722689e-01	ci left: 1.071497e-05	ci right 2.186044e-05	k: 33	n:2120000
Cons ci ratio: 1.634013e-02	ci left: 2.621373e-02	ci right 2.664606e-02	k: 56030	n:2120000
KS ci ratio: 2.724455e-01	ci left: 8.435336e-05	ci right 1.113831e-04	k: 206	n:2120000
MEF2D   2120000 perm   2373 sec   (894 perm/sec)   p_kst 9.716981e-05   p_cons 2.642925e-02   p_joint 1.556604e-05

Joint ci ratio: 6.722689e-01	ci left: 1.066466e-05	ci right 2.175780e-05	k: 33	n:2130000
Cons ci ratio: 1.630445e-02	ci left: 2.620568e-02	ci right 2.663692e-02	k: 56276	n:2130000
KS ci ratio: 2.711387e-01	ci left: 8.483232e-05	ci right 1.118630e-04	k: 208	n:2130000
MEF2D   2130000 perm   2392 sec   (890 perm/sec)   p_kst 9.765258e-05   p_cons 2.642066e-02   p_joint 1.549296e-05

Joint ci ratio: 6.722690e-01	ci left: 1.061483e-05	ci right 2.165613e-05	k: 33	n:2140000
Cons ci ratio: 1.626471e-02	ci left: 2.621121e-02	ci right 2.664148e-02	k: 56551	n:2140000
KS ci ratio: 2.704924e-01	ci left: 8.487148e-05	ci right 1.118392e-04	k: 209	n:2140000
MEF2D   2140000 perm   2412 sec   (887 perm/sec)   p_kst 9.766355e-05   p_cons 2.642570e-02   p_joint 1.542056e-05

Joint ci ratio: 6.722690e-01	ci left: 1.056546e-05	ci right 2.155541e-05	k: 33	n:2150000
Cons ci ratio: 1.622703e-02	ci left: 2.621112e-02	ci right 2.664039e-02	k: 56814	n:2150000
KS ci ratio: 2.698506e-01	ci left: 8.491034e-05	ci right 1.118155e-04	k: 210	n:2150000
MEF2D   2150000 perm   2432 sec   (884 perm/sec)   p_kst 9.767442e-05   p_cons 2.642512e-02   p_joint 1.534884e-05

Joint ci ratio: 6.625954e-01	ci left: 1.090094e-05	ci right 2.199604e-05	k: 34	n:2160000
Cons ci ratio: 1.619077e-02	ci left: 2.620735e-02	ci right 2.663559e-02	k: 57069	n:2160000
KS ci ratio: 2.692134e-01	ci left: 8.494892e-05	ci right 1.117921e-04	k: 211	n:2160000
MEF2D   2160000 perm   2452 sec   (881 perm/sec)   p_kst 9.768519e-05   p_cons 2.642083e-02   p_joint 1.574074e-05

Joint ci ratio: 6.625954e-01	ci left: 1.085071e-05	ci right 2.189467e-05	k: 34	n:2170000
Cons ci ratio: 1.615345e-02	ci left: 2.620775e-02	ci right 2.663499e-02	k: 57333	n:2170000
KS ci ratio: 2.685807e-01	ci left: 8.498721e-05	ci right 1.117687e-04	k: 212	n:2170000
MEF2D   2170000 perm   2472 sec   (878 perm/sec)   p_kst 9.769585e-05   p_cons 2.642074e-02   p_joint 1.566820e-05

Joint ci ratio: 6.625955e-01	ci left: 1.080094e-05	ci right 2.179424e-05	k: 34	n:2180000
Cons ci ratio: 1.612071e-02	ci left: 2.619443e-02	ci right 2.662059e-02	k: 57567	n:2180000
KS ci ratio: 2.679525e-01	ci left: 8.502523e-05	ci right 1.117455e-04	k: 213	n:2180000
MEF2D   2180000 perm   2492 sec   (875 perm/sec)   p_kst 9.770642e-05   p_cons 2.640688e-02   p_joint 1.559633e-05

Joint ci ratio: 6.625955e-01	ci left: 1.075162e-05	ci right 2.169472e-05	k: 34	n:2190000
Cons ci ratio: 1.608458e-02	ci left: 2.619261e-02	ci right 2.661777e-02	k: 57826	n:2190000
KS ci ratio: 2.679525e-01	ci left: 8.463699e-05	ci right 1.112352e-04	k: 213	n:2190000
MEF2D   2190000 perm   2511 sec   (872 perm/sec)   p_kst 9.726027e-05   p_cons 2.640457e-02   p_joint 1.552511e-05

Joint ci ratio: 6.625955e-01	ci left: 1.070274e-05	ci right 2.159611e-05	k: 34	n:2200000
Cons ci ratio: 1.605126e-02	ci left: 2.618266e-02	ci right 2.660677e-02	k: 58067	n:2200000
KS ci ratio: 2.673287e-01	ci left: 8.467632e-05	ci right 1.112146e-04	k: 214	n:2200000
MEF2D   2200000 perm   2532 sec   (869 perm/sec)   p_kst 9.727273e-05   p_cons 2.639409e-02   p_joint 1.545455e-05

Joint ci ratio: 6.625955e-01	ci left: 1.065432e-05	ci right 2.149839e-05	k: 34	n:2210000
Cons ci ratio: 1.601616e-02	ci left: 2.617911e-02	ci right 2.660222e-02	k: 58322	n:2210000
KS ci ratio: 2.667091e-01	ci left: 8.471537e-05	ci right 1.111941e-04	k: 215	n:2210000
MEF2D   2210000 perm   2553 sec   (866 perm/sec)   p_kst 9.728507e-05   p_cons 2.639005e-02   p_joint 1.538462e-05

Joint ci ratio: 6.533279e-01	ci left: 1.098146e-05	ci right 2.192630e-05	k: 35	n:2220000
Cons ci ratio: 1.598172e-02	ci left: 2.617424e-02	ci right 2.659636e-02	k: 58574	n:2220000
KS ci ratio: 2.654828e-01	ci left: 8.517458e-05	ci right 1.116541e-04	k: 217	n:2220000
MEF2D   2220000 perm   2573 sec   (863 perm/sec)   p_kst 9.774775e-05   p_cons 2.638468e-02   p_joint 1.576577e-05

Joint ci ratio: 6.533279e-01	ci left: 1.093221e-05	ci right 2.182797e-05	k: 35	n:2230000
Cons ci ratio: 1.594276e-02	ci left: 2.618461e-02	ci right 2.660586e-02	k: 58860	n:2230000
KS ci ratio: 2.642732e-01	ci left: 8.562995e-05	ci right 1.121096e-04	k: 219	n:2230000
MEF2D   2230000 perm   2594 sec   (860 perm/sec)   p_kst 9.820628e-05   p_cons 2.639462e-02   p_joint 1.569507e-05

Joint ci ratio: 6.533279e-01	ci left: 1.088341e-05	ci right 2.173053e-05	k: 35	n:2240000
Cons ci ratio: 1.590644e-02	ci left: 2.618733e-02	ci right 2.660765e-02	k: 59129	n:2240000
KS ci ratio: 2.642733e-01	ci left: 8.524767e-05	ci right 1.116091e-04	k: 219	n:2240000
MEF2D   2240000 perm   2614 sec   (857 perm/sec)   p_kst 9.776786e-05   p_cons 2.639688e-02   p_joint 1.562500e-05

Joint ci ratio: 6.533280e-01	ci left: 1.083504e-05	ci right 2.163395e-05	k: 35	n:2250000
Cons ci ratio: 1.586926e-02	ci left: 2.619356e-02	ci right 2.661299e-02	k: 59406	n:2250000
KS ci ratio: 2.642734e-01	ci left: 8.486879e-05	ci right 1.111131e-04	k: 219	n:2250000
MEF2D   2250000 perm   2635 sec   (854 perm/sec)   p_kst 9.733333e-05   p_cons 2.640267e-02   p_joint 1.555556e-05

Joint ci ratio: 6.533280e-01	ci left: 1.078709e-05	ci right 2.153822e-05	k: 35	n:2260000
Cons ci ratio: 1.583330e-02	ci left: 2.619666e-02	ci right 2.661518e-02	k: 59676	n:2260000
KS ci ratio: 2.642734e-01	ci left: 8.449326e-05	ci right 1.106215e-04	k: 219	n:2260000
MEF2D   2260000 perm   2656 sec   (851 perm/sec)   p_kst 9.690265e-05   p_cons 2.640531e-02   p_joint 1.548673e-05

Joint ci ratio: 6.533280e-01	ci left: 1.073957e-05	ci right 2.144334e-05	k: 35	n:2270000
Cons ci ratio: 1.580016e-02	ci left: 2.619139e-02	ci right 2.660894e-02	k: 59927	n:2270000
KS ci ratio: 2.630803e-01	ci left: 8.494387e-05	ci right 1.110733e-04	k: 221	n:2270000
MEF2D   2270000 perm   2677 sec   (848 perm/sec)   p_kst 9.735683e-05   p_cons 2.639956e-02   p_joint 1.541850e-05

Joint ci ratio: 6.533280e-01	ci left: 1.069247e-05	ci right 2.134929e-05	k: 35	n:2280000
Cons ci ratio: 1.576332e-02	ci left: 2.619884e-02	ci right 2.661553e-02	k: 60207	n:2280000
KS ci ratio: 2.624897e-01	ci left: 8.498102e-05	ci right 1.110536e-04	k: 222	n:2280000
MEF2D   2280000 perm   2699 sec   (845 perm/sec)   p_kst 9.736842e-05   p_cons 2.640658e-02   p_joint 1.535088e-05

Joint ci ratio: 6.533281e-01	ci left: 1.064578e-05	ci right 2.125606e-05	k: 35	n:2290000
Cons ci ratio: 1.572794e-02	ci left: 2.620231e-02	ci right 2.661811e-02	k: 60478	n:2290000
KS ci ratio: 2.613204e-01	ci left: 8.542596e-05	ci right 1.114992e-04	k: 224	n:2290000
MEF2D   2290000 perm   2720 sec   (842 perm/sec)   p_kst 9.781659e-05   p_cons 2.640961e-02   p_joint 1.528384e-05

Joint ci ratio: 6.444387e-01	ci left: 1.096261e-05	ci right 2.166914e-05	k: 36	n:2300000
Cons ci ratio: 1.569399e-02	ci left: 2.620185e-02	ci right 2.661674e-02	k: 60740	n:2300000
KS ci ratio: 2.607417e-01	ci left: 8.546088e-05	ci right 1.114776e-04	k: 225	n:2300000
MEF2D   2300000 perm   2741 sec   (839 perm/sec)   p_kst 9.782609e-05   p_cons 2.640870e-02   p_joint 1.565217e-05

Joint ci ratio: 6.359026e-01	ci left: 1.127769e-05	ci right 2.207769e-05	k: 37	n:2310000
Cons ci ratio: 1.566184e-02	ci left: 2.619622e-02	ci right 2.661016e-02	k: 60990	n:2310000
KS ci ratio: 2.607417e-01	ci left: 8.509091e-05	ci right 1.109950e-04	k: 225	n:2310000
MEF2D   2310000 perm   2762 sec   (836 perm/sec)   p_kst 9.740260e-05   p_cons 2.640260e-02   p_joint 1.601732e-05

Joint ci ratio: 6.359026e-01	ci left: 1.122908e-05	ci right 2.198253e-05	k: 37	n:2320000
Cons ci ratio: 1.562622e-02	ci left: 2.620267e-02	ci right 2.661576e-02	k: 61268	n:2320000
KS ci ratio: 2.595955e-01	ci left: 8.553000e-05	ci right 1.114347e-04	k: 227	n:2320000
MEF2D   2320000 perm   2784 sec   (833 perm/sec)   p_kst 9.784483e-05   p_cons 2.640862e-02   p_joint 1.594828e-05

Joint ci ratio: 6.276970e-01	ci left: 1.154125e-05	ci right 2.238533e-05	k: 38	n:2330000
Cons ci ratio: 1.559318e-02	ci left: 2.620136e-02	ci right 2.661355e-02	k: 61528	n:2330000
KS ci ratio: 2.590281e-01	ci left: 8.556421e-05	ci right 1.114135e-04	k: 228	n:2330000
MEF2D   2330000 perm   2805 sec   (831 perm/sec)   p_kst 9.785408e-05   p_cons 2.640687e-02   p_joint 1.630901e-05

Joint ci ratio: 6.276970e-01	ci left: 1.149193e-05	ci right 2.228966e-05	k: 38	n:2340000
Cons ci ratio: 1.555932e-02	ci left: 2.620347e-02	ci right 2.661480e-02	k: 61796	n:2340000
KS ci ratio: 2.590282e-01	ci left: 8.519855e-05	ci right 1.109373e-04	k: 228	n:2340000
MEF2D   2340000 perm   2827 sec   (828 perm/sec)   p_kst 9.743590e-05   p_cons 2.640855e-02   p_joint 1.623932e-05

Joint ci ratio: 6.276970e-01	ci left: 1.144303e-05	ci right 2.219481e-05	k: 38	n:2350000
Cons ci ratio: 1.552799e-02	ci left: 2.619794e-02	ci right 2.660834e-02	k: 62046	n:2350000
KS ci ratio: 2.590282e-01	ci left: 8.483600e-05	ci right 1.104653e-04	k: 228	n:2350000
MEF2D   2350000 perm   2849 sec   (825 perm/sec)   p_kst 9.702128e-05   p_cons 2.640255e-02   p_joint 1.617021e-05

Joint ci ratio: 6.276970e-01	ci left: 1.139454e-05	ci right 2.210077e-05	k: 38	n:2360000
Cons ci ratio: 1.549915e-02	ci left: 2.618485e-02	ci right 2.659428e-02	k: 62278	n:2360000
KS ci ratio: 2.590283e-01	ci left: 8.447652e-05	ci right 1.099972e-04	k: 228	n:2360000
MEF2D   2360000 perm   2870 sec   (822 perm/sec)   p_kst 9.661017e-05   p_cons 2.638898e-02   p_joint 1.610169e-05

Joint ci ratio: 6.276971e-01	ci left: 1.134646e-05	ci right 2.200752e-05	k: 38	n:2370000
Cons ci ratio: 1.546577e-02	ci left: 2.618743e-02	ci right 2.659601e-02	k: 62547	n:2370000
KS ci ratio: 2.590283e-01	ci left: 8.412008e-05	ci right 1.095331e-04	k: 228	n:2370000
MEF2D   2370000 perm   2892 sec   (819 perm/sec)   p_kst 9.620253e-05   p_cons 2.639114e-02   p_joint 1.603376e-05

Joint ci ratio: 6.276971e-01	ci left: 1.129879e-05	ci right 2.191505e-05	k: 38	n:2380000
Cons ci ratio: 1.543096e-02	ci left: 2.619543e-02	ci right 2.660320e-02	k: 62829	n:2380000
KS ci ratio: 2.590284e-01	ci left: 8.376663e-05	ci right 1.090729e-04	k: 228	n:2380000
MEF2D   2380000 perm   2914 sec   (817 perm/sec)   p_kst 9.579832e-05   p_cons 2.639874e-02   p_joint 1.596639e-05

Joint ci ratio: 6.276971e-01	ci left: 1.125151e-05	ci right 2.182335e-05	k: 38	n:2390000
Cons ci ratio: 1.539601e-02	ci left: 2.620461e-02	ci right 2.661160e-02	k: 63114	n:2390000
KS ci ratio: 2.584647e-01	ci left: 8.380742e-05	ci right 1.090620e-04	k: 229	n:2390000
MEF2D   2390000 perm   2936 sec   (814 perm/sec)   p_kst 9.581590e-05   p_cons 2.640753e-02   p_joint 1.589958e-05

Joint ci ratio: 6.276971e-01	ci left: 1.120463e-05	ci right 2.173242e-05	k: 38	n:2400000
Cons ci ratio: 1.536553e-02	ci left: 2.619961e-02	ci right 2.660570e-02	k: 63365	n:2400000
KS ci ratio: 2.584647e-01	ci left: 8.345822e-05	ci right 1.086076e-04	k: 229	n:2400000
MEF2D   2400000 perm   2958 sec   (811 perm/sec)   p_kst 9.541667e-05   p_cons 2.640208e-02   p_joint 1.583333e-05

Joint ci ratio: 6.276972e-01	ci left: 1.115814e-05	ci right 2.164225e-05	k: 38	n:2410000
Cons ci ratio: 1.533659e-02	ci left: 2.619010e-02	ci right 2.659527e-02	k: 63605	n:2410000
KS ci ratio: 2.584648e-01	ci left: 8.311192e-05	ci right 1.081569e-04	k: 229	n:2410000
MEF2D   2410000 perm   2980 sec   (809 perm/sec)   p_kst 9.502075e-05   p_cons 2.639212e-02   p_joint 1.576763e-05

Joint ci ratio: 6.276972e-01	ci left: 1.111203e-05	ci right 2.155282e-05	k: 38	n:2420000
Cons ci ratio: 1.530745e-02	ci left: 2.618190e-02	ci right 2.658618e-02	k: 63848	n:2420000
KS ci ratio: 2.584648e-01	ci left: 8.276848e-05	ci right 1.077100e-04	k: 229	n:2420000
MEF2D   2420000 perm   3003 sec   (806 perm/sec)   p_kst 9.462810e-05   p_cons 2.638347e-02   p_joint 1.570248e-05

Joint ci ratio: 6.276972e-01	ci left: 1.106630e-05	ci right 2.146412e-05	k: 38	n:2430000
Cons ci ratio: 1.527725e-02	ci left: 2.617787e-02	ci right 2.658128e-02	k: 64101	n:2430000
KS ci ratio: 2.584649e-01	ci left: 8.242787e-05	ci right 1.072667e-04	k: 229	n:2430000
MEF2D   2430000 perm   3025 sec   (803 perm/sec)   p_kst 9.423868e-05   p_cons 2.637901e-02   p_joint 1.563786e-05

Joint ci ratio: 6.276972e-01	ci left: 1.102095e-05	ci right 2.137615e-05	k: 38	n:2440000
Cons ci ratio: 1.524722e-02	ci left: 2.617388e-02	ci right 2.657643e-02	k: 64354	n:2440000
KS ci ratio: 2.573483e-01	ci left: 8.285674e-05	ci right 1.076997e-04	k: 231	n:2440000
MEF2D   2440000 perm   3048 sec   (801 perm/sec)   p_kst 9.467213e-05   p_cons 2.637459e-02   p_joint 1.557377e-05

Joint ci ratio: 6.276972e-01	ci left: 1.097597e-05	ci right 2.128891e-05	k: 38	n:2450000
Cons ci ratio: 1.521640e-02	ci left: 2.617317e-02	ci right 2.657489e-02	k: 64615	n:2450000
KS ci ratio: 2.567955e-01	ci left: 8.290041e-05	ci right 1.076945e-04	k: 232	n:2450000
MEF2D   2450000 perm   3070 sec   (798 perm/sec)   p_kst 9.469388e-05   p_cons 2.637347e-02   p_joint 1.551020e-05

Joint ci ratio: 6.276973e-01	ci left: 1.093135e-05	ci right 2.120237e-05	k: 38	n:2460000
Cons ci ratio: 1.518614e-02	ci left: 2.617126e-02	ci right 2.657214e-02	k: 64873	n:2460000
KS ci ratio: 2.562462e-01	ci left: 8.294379e-05	ci right 1.076893e-04	k: 233	n:2460000
MEF2D   2460000 perm   3093 sec   (795 perm/sec)   p_kst 9.471545e-05   p_cons 2.637114e-02   p_joint 1.544715e-05

Joint ci ratio: 6.276973e-01	ci left: 1.088709e-05	ci right 2.111653e-05	k: 38	n:2470000
Cons ci ratio: 1.515569e-02	ci left: 2.617057e-02	ci right 2.657063e-02	k: 65134	n:2470000
KS ci ratio: 2.562462e-01	ci left: 8.260798e-05	ci right 1.072533e-04	k: 233	n:2470000
MEF2D   2470000 perm   3115 sec   (793 perm/sec)   p_kst 9.433198e-05   p_cons 2.637004e-02   p_joint 1.538462e-05

Joint ci ratio: 6.198013e-01	ci left: 1.118261e-05	ci right 2.149763e-05	k: 39	n:2480000
Cons ci ratio: 1.512447e-02	ci left: 2.617310e-02	ci right 2.657236e-02	k: 65403	n:2480000
KS ci ratio: 2.557004e-01	ci left: 8.265225e-05	ci right 1.072498e-04	k: 234	n:2480000
MEF2D   2480000 perm   3138 sec   (790 perm/sec)   p_kst 9.435484e-05   p_cons 2.637218e-02   p_joint 1.572581e-05

Joint ci ratio: 6.198013e-01	ci left: 1.113770e-05	ci right 2.141130e-05	k: 39	n:2490000
Cons ci ratio: 1.509357e-02	ci left: 2.617521e-02	ci right 2.657368e-02	k: 65671	n:2490000
KS ci ratio: 2.557005e-01	ci left: 8.232031e-05	ci right 1.068191e-04	k: 234	n:2490000
MEF2D   2490000 perm   3160 sec   (788 perm/sec)   p_kst 9.397590e-05   p_cons 2.637390e-02   p_joint 1.566265e-05

Joint ci ratio: 6.048639e-01	ci left: 1.176895e-05	ci right 2.224839e-05	k: 41	n:2500000
Cons ci ratio: 1.506344e-02	ci left: 2.617531e-02	ci right 2.657299e-02	k: 65934	n:2500000
KS ci ratio: 2.551582e-01	ci left: 8.236542e-05	ci right 1.068174e-04	k: 235	n:2500000
MEF2D   2500000 perm   3183 sec   (785 perm/sec)   p_kst 9.400000e-05   p_cons 2.637360e-02   p_joint 1.640000e-05

Joint ci ratio: 5.977892e-01	ci left: 1.205975e-05	ci right 2.261818e-05	k: 42	n:2510000
Cons ci ratio: 1.503069e-02	ci left: 2.618494e-02	ci right 2.658189e-02	k: 66221	n:2510000
KS ci ratio: 2.546193e-01	ci left: 8.241023e-05	ci right 1.068156e-04	k: 236	n:2510000
MEF2D   2510000 perm   3206 sec   (783 perm/sec)   p_kst 9.402390e-05   p_cons 2.638287e-02   p_joint 1.673307e-05

Joint ci ratio: 5.977892e-01	ci left: 1.201189e-05	ci right 2.252843e-05	k: 42	n:2520000
Cons ci ratio: 1.499919e-02	ci left: 2.619094e-02	ci right 2.658714e-02	k: 66499	n:2520000
KS ci ratio: 2.540838e-01	ci left: 8.245473e-05	ci right 1.068138e-04	k: 237	n:2520000
MEF2D   2520000 perm   3229 sec   (780 perm/sec)   p_kst 9.404762e-05   p_cons 2.638849e-02   p_joint 1.666667e-05

Joint ci ratio: 5.977892e-01	ci left: 1.196441e-05	ci right 2.243938e-05	k: 42	n:2530000
Cons ci ratio: 1.496916e-02	ci left: 2.619255e-02	ci right 2.658798e-02	k: 66766	n:2530000
KS ci ratio: 2.530229e-01	ci left: 8.286911e-05	ci right 1.072323e-04	k: 239	n:2530000
MEF2D   2530000 perm   3252 sec   (778 perm/sec)   p_kst 9.446640e-05   p_cons 2.638972e-02   p_joint 1.660079e-05

Joint ci ratio: 5.977892e-01	ci left: 1.191731e-05	ci right 2.235104e-05	k: 42	n:2540000
Cons ci ratio: 1.493680e-02	ci left: 2.620279e-02	ci right 2.659750e-02	k: 67055	n:2540000
KS ci ratio: 2.524974e-01	ci left: 8.291162e-05	ci right 1.072287e-04	k: 240	n:2540000
MEF2D   2540000 perm   3276 sec   (775 perm/sec)   p_kst 9.448819e-05   p_cons 2.639961e-02   p_joint 1.653543e-05

Joint ci ratio: 5.977892e-01	ci left: 1.187058e-05	ci right 2.226339e-05	k: 42	n:2550000
Cons ci ratio: 1.490543e-02	ci left: 2.621021e-02	ci right 2.660420e-02	k: 67337	n:2550000
KS ci ratio: 2.524974e-01	ci left: 8.258647e-05	ci right 1.068082e-04	k: 240	n:2550000
MEF2D   2550000 perm   3299 sec   (773 perm/sec)   p_kst 9.411765e-05   p_cons 2.640667e-02   p_joint 1.647059e-05

Joint ci ratio: 5.977893e-01	ci left: 1.182421e-05	ci right 2.217642e-05	k: 42	n:2560000
Cons ci ratio: 1.487687e-02	ci left: 2.620862e-02	ci right 2.660183e-02	k: 67596	n:2560000
KS ci ratio: 2.524975e-01	ci left: 8.226387e-05	ci right 1.063910e-04	k: 240	n:2560000
MEF2D   2560000 perm   3322 sec   (771 perm/sec)   p_kst 9.375000e-05   p_cons 2.640469e-02   p_joint 1.640625e-05

Joint ci ratio: 5.977893e-01	ci left: 1.177820e-05	ci right 2.209013e-05	k: 42	n:2570000
Cons ci ratio: 1.484880e-02	ci left: 2.620588e-02	ci right 2.659830e-02	k: 67852	n:2570000
KS ci ratio: 2.524975e-01	ci left: 8.194377e-05	ci right 1.059770e-04	k: 240	n:2570000
MEF2D   2570000 perm   3346 sec   (768 perm/sec)   p_kst 9.338521e-05   p_cons 2.640156e-02   p_joint 1.634241e-05

Joint ci ratio: 5.977893e-01	ci left: 1.173255e-05	ci right 2.200451e-05	k: 42	n:2580000
Cons ci ratio: 1.482234e-02	ci left: 2.619814e-02	ci right 2.658974e-02	k: 68095	n:2580000
KS ci ratio: 2.519753e-01	ci left: 8.198926e-05	ci right 1.059783e-04	k: 241	n:2580000
MEF2D   2580000 perm   3369 sec   (766 perm/sec)   p_kst 9.341085e-05   p_cons 2.639341e-02   p_joint 1.627907e-05

Joint ci ratio: 5.977893e-01	ci left: 1.168725e-05	ci right 2.191955e-05	k: 42	n:2590000
Cons ci ratio: 1.479292e-02	ci left: 2.620124e-02	ci right 2.659210e-02	k: 68366	n:2590000
KS ci ratio: 2.514563e-01	ci left: 8.203444e-05	ci right 1.059795e-04	k: 242	n:2590000
MEF2D   2590000 perm   3393 sec   (763 perm/sec)   p_kst 9.343629e-05   p_cons 2.639614e-02   p_joint 1.621622e-05

Joint ci ratio: 5.909571e-01	ci left: 1.196899e-05	ci right 2.227714e-05	k: 43	n:2600000
Cons ci ratio: 1.476455e-02	ci left: 2.620125e-02	ci right 2.659135e-02	k: 68629	n:2600000
KS ci ratio: 2.499182e-01	ci left: 8.280029e-05	ci right 1.067981e-04	k: 245	n:2600000
MEF2D   2600000 perm   3418 sec   (761 perm/sec)   p_kst 9.423077e-05   p_cons 2.639577e-02   p_joint 1.653846e-05

Joint ci ratio: 5.843539e-01	ci left: 1.224925e-05	ci right 2.263133e-05	k: 44	n:2610000
Cons ci ratio: 1.473843e-02	ci left: 2.619400e-02	ci right 2.658330e-02	k: 68873	n:2610000
KS ci ratio: 2.489084e-01	ci left: 8.320144e-05	ci right 1.072030e-04	k: 247	n:2610000
MEF2D   2610000 perm   3441 sec   (758 perm/sec)   p_kst 9.463602e-05   p_cons 2.638812e-02   p_joint 1.685824e-05

Joint ci ratio: 5.843540e-01	ci left: 1.220249e-05	ci right 2.254495e-05	k: 44	n:2620000
Cons ci ratio: 1.470731e-02	ci left: 2.620468e-02	ci right 2.659331e-02	k: 69164	n:2620000
KS ci ratio: 2.489084e-01	ci left: 8.288388e-05	ci right 1.067938e-04	k: 247	n:2620000
MEF2D   2620000 perm   3465 sec   (756 perm/sec)   p_kst 9.427481e-05   p_cons 2.639847e-02   p_joint 1.679389e-05

Joint ci ratio: 5.843540e-01	ci left: 1.215610e-05	ci right 2.245923e-05	k: 44	n:2630000
Cons ci ratio: 1.467987e-02	ci left: 2.620316e-02	ci right 2.659104e-02	k: 69423	n:2630000
KS ci ratio: 2.479107e-01	ci left: 8.328185e-05	ci right 1.071954e-04	k: 249	n:2630000
MEF2D   2630000 perm   3489 sec   (754 perm/sec)   p_kst 9.467681e-05   p_cons 2.639658e-02   p_joint 1.673004e-05

Joint ci ratio: 5.843540e-01	ci left: 1.211005e-05	ci right 2.237416e-05	k: 44	n:2640000
Cons ci ratio: 1.464923e-02	ci left: 2.621335e-02	ci right 2.660056e-02	k: 69713	n:2640000
KS ci ratio: 2.479108e-01	ci left: 8.296639e-05	ci right 1.067894e-04	k: 249	n:2640000
MEF2D   2640000 perm   3513 sec   (751 perm/sec)   p_kst 9.431818e-05   p_cons 2.640644e-02   p_joint 1.666667e-05

Joint ci ratio: 5.843540e-01	ci left: 1.206435e-05	ci right 2.228973e-05	k: 44	n:2650000
Cons ci ratio: 1.462200e-02	ci left: 2.621219e-02	ci right 2.659866e-02	k: 69973	n:2650000
KS ci ratio: 2.464365e-01	ci left: 8.371527e-05	ci right 1.075885e-04	k: 252	n:2650000
MEF2D   2650000 perm   3538 sec   (749 perm/sec)   p_kst 9.509434e-05   p_cons 2.640491e-02   p_joint 1.660377e-05

Joint ci ratio: 5.843540e-01	ci left: 1.201900e-05	ci right 2.220593e-05	k: 44	n:2660000
Cons ci ratio: 1.459513e-02	ci left: 2.621029e-02	ci right 2.659601e-02	k: 70231	n:2660000
KS ci ratio: 2.464365e-01	ci left: 8.340055e-05	ci right 1.071840e-04	k: 252	n:2660000
MEF2D   2660000 perm   3562 sec   (747 perm/sec)   p_kst 9.473684e-05   p_cons 2.640263e-02   p_joint 1.654135e-05

Joint ci ratio: 5.843541e-01	ci left: 1.197398e-05	ci right 2.212276e-05	k: 44	n:2670000
Cons ci ratio: 1.456608e-02	ci left: 2.621661e-02	ci right 2.660165e-02	k: 70511	n:2670000
KS ci ratio: 2.464366e-01	ci left: 8.308818e-05	ci right 1.067826e-04	k: 252	n:2670000
MEF2D   2670000 perm   3587 sec   (744 perm/sec)   p_kst 9.438202e-05   p_cons 2.640861e-02   p_joint 1.647940e-05

Joint ci ratio: 5.843541e-01	ci left: 1.192930e-05	ci right 2.204022e-05	k: 44	n:2680000
Cons ci ratio: 1.453720e-02	ci left: 2.622288e-02	ci right 2.660725e-02	k: 70791	n:2680000
KS ci ratio: 2.459510e-01	ci left: 8.312827e-05	ci right 1.067802e-04	k: 253	n:2680000
MEF2D   2680000 perm   3611 sec   (742 perm/sec)   p_kst 9.440299e-05   p_cons 2.641455e-02   p_joint 1.641791e-05

Joint ci ratio: 5.843541e-01	ci left: 1.188496e-05	ci right 2.195828e-05	k: 44	n:2690000
Cons ci ratio: 1.451049e-02	ci left: 2.622207e-02	ci right 2.660571e-02	k: 71052	n:2690000
KS ci ratio: 2.454682e-01	ci left: 8.316810e-05	ci right 1.067779e-04	k: 254	n:2690000
MEF2D   2690000 perm   3636 sec   (740 perm/sec)   p_kst 9.442379e-05   p_cons 2.641338e-02   p_joint 1.635688e-05

Joint ci ratio: 5.018988e-01	ci left: 1.695794e-05	ci right 2.860431e-05	k: 60	n:2700000
Cons ci ratio: 1.448413e-02	ci left: 2.622053e-02	ci right 2.660345e-02	k: 71311	n:2700000
KS ci ratio: 2.440368e-01	ci left: 8.390305e-05	ci right 1.075615e-04	k: 257	n:2700000
MEF2D   2700000 perm   3661 sec   (738 perm/sec)   p_kst 9.518519e-05   p_cons 2.641148e-02   p_joint 2.222222e-05

Joint ci ratio: 5.018988e-01	ci left: 1.689536e-05	ci right 2.849876e-05	k: 60	n:2710000
Cons ci ratio: 1.445708e-02	ci left: 2.622195e-02	ci right 2.660416e-02	k: 71578	n:2710000
KS ci ratio: 2.440369e-01	ci left: 8.359344e-05	ci right 1.071646e-04	k: 257	n:2710000
MEF2D   2710000 perm   3686 sec   (735 perm/sec)   p_kst 9.483395e-05   p_cons 2.641255e-02   p_joint 2.214022e-05

Joint ci ratio: 5.018988e-01	ci left: 1.683325e-05	ci right 2.839399e-05	k: 60	n:2720000
Cons ci ratio: 1.443101e-02	ci left: 2.622042e-02	ci right 2.660191e-02	k: 71837	n:2720000
KS ci ratio: 2.440369e-01	ci left: 8.328611e-05	ci right 1.067706e-04	k: 257	n:2720000
MEF2D   2720000 perm   3710 sec   (733 perm/sec)   p_kst 9.448529e-05   p_cons 2.641066e-02   p_joint 2.205882e-05

Joint ci ratio: 5.018989e-01	ci left: 1.677159e-05	ci right 2.828998e-05	k: 60	n:2730000
Cons ci ratio: 1.440303e-02	ci left: 2.622620e-02	ci right 2.660704e-02	k: 72116	n:2730000
KS ci ratio: 2.440370e-01	ci left: 8.298103e-05	ci right 1.063795e-04	k: 257	n:2730000
MEF2D   2730000 perm   3735 sec   (731 perm/sec)   p_kst 9.413919e-05   p_cons 2.641612e-02   p_joint 2.197802e-05

Joint ci ratio: 5.018989e-01	ci left: 1.671038e-05	ci right 2.818673e-05	k: 60	n:2740000
Cons ci ratio: 1.437970e-02	ci left: 2.621594e-02	ci right 2.659601e-02	k: 72351	n:2740000
KS ci ratio: 2.435654e-01	ci left: 8.302085e-05	ci right 1.063785e-04	k: 258	n:2740000
MEF2D   2740000 perm   3760 sec   (729 perm/sec)   p_kst 9.416058e-05   p_cons 2.640547e-02   p_joint 2.189781e-05

Joint ci ratio: 5.018989e-01	ci left: 1.664961e-05	ci right 2.808424e-05	k: 60	n:2750000
Cons ci ratio: 1.435353e-02	ci left: 2.621627e-02	ci right 2.659564e-02	k: 72615	n:2750000
KS ci ratio: 2.435654e-01	ci left: 8.271895e-05	ci right 1.059917e-04	k: 258	n:2750000
MEF2D   2750000 perm   3785 sec   (726 perm/sec)   p_kst 9.381818e-05   p_cons 2.640545e-02   p_joint 2.181818e-05

Joint ci ratio: 5.018989e-01	ci left: 1.658929e-05	ci right 2.798248e-05	k: 60	n:2760000
Cons ci ratio: 1.432973e-02	ci left: 2.620865e-02	ci right 2.658727e-02	k: 72857	n:2760000
KS ci ratio: 2.426304e-01	ci left: 8.309975e-05	ci right 1.063763e-04	k: 260	n:2760000
MEF2D   2760000 perm   3810 sec   (724 perm/sec)   p_kst 9.420290e-05   p_cons 2.639746e-02   p_joint 2.173913e-05

Joint ci ratio: 5.018990e-01	ci left: 1.652940e-05	ci right 2.788146e-05	k: 60	n:2770000
Cons ci ratio: 1.430053e-02	ci left: 2.622087e-02	ci right 2.659889e-02	k: 73154	n:2770000
KS ci ratio: 2.426304e-01	ci left: 8.279975e-05	ci right 1.059923e-04	k: 260	n:2770000
MEF2D   2770000 perm   3836 sec   (722 perm/sec)   p_kst 9.386282e-05   p_cons 2.640939e-02   p_joint 2.166065e-05

Joint ci ratio: 5.018990e-01	ci left: 1.646994e-05	ci right 2.778117e-05	k: 60	n:2780000
Cons ci ratio: 1.427739e-02	ci left: 2.621185e-02	ci right 2.658913e-02	k: 73392	n:2780000
KS ci ratio: 2.426305e-01	ci left: 8.250191e-05	ci right 1.056110e-04	k: 260	n:2780000
MEF2D   2780000 perm   3861 sec   (720 perm/sec)   p_kst 9.352518e-05   p_cons 2.640000e-02   p_joint 2.158273e-05

Joint ci ratio: 5.018990e-01	ci left: 1.641091e-05	ci right 2.768160e-05	k: 60	n:2790000
Cons ci ratio: 1.425208e-02	ci left: 2.621112e-02	ci right 2.658771e-02	k: 73653	n:2790000
KS ci ratio: 2.421670e-01	ci left: 8.254286e-05	ci right 1.056126e-04	k: 261	n:2790000
MEF2D   2790000 perm   3886 sec   (718 perm/sec)   p_kst 9.354839e-05   p_cons 2.639892e-02   p_joint 2.150538e-05

Joint ci ratio: 5.018990e-01	ci left: 1.635230e-05	ci right 2.758273e-05	k: 60	n:2800000
Cons ci ratio: 1.422651e-02	ci left: 2.621181e-02	ci right 2.658774e-02	k: 73918	n:2800000
KS ci ratio: 2.417062e-01	ci left: 8.258355e-05	ci right 1.056142e-04	k: 262	n:2800000
MEF2D   2800000 perm   3912 sec   (716 perm/sec)   p_kst 9.357143e-05   p_cons 2.639929e-02   p_joint 2.142857e-05

Joint ci ratio: 5.018990e-01	ci left: 1.629410e-05	ci right 2.748458e-05	k: 60	n:2810000
Cons ci ratio: 1.419979e-02	ci left: 2.621712e-02	ci right 2.659240e-02	k: 74196	n:2810000
KS ci ratio: 2.412479e-01	ci left: 8.262400e-05	ci right 1.056157e-04	k: 263	n:2810000
MEF2D   2810000 perm   3937 sec   (714 perm/sec)   p_kst 9.359431e-05   p_cons 2.640427e-02   p_joint 2.135231e-05

Joint ci ratio: 5.018991e-01	ci left: 1.623632e-05	ci right 2.738711e-05	k: 60	n:2820000
Cons ci ratio: 1.417558e-02	ci left: 2.621390e-02	ci right 2.658849e-02	k: 74450	n:2820000
KS ci ratio: 2.412480e-01	ci left: 8.233101e-05	ci right 1.052412e-04	k: 263	n:2820000
MEF2D   2820000 perm   3963 sec   (712 perm/sec)   p_kst 9.326241e-05   p_cons 2.640071e-02   p_joint 2.127660e-05

Joint ci ratio: 4.978350e-01	ci left: 1.648773e-05	ci right 2.768792e-05	k: 61	n:2830000
Cons ci ratio: 1.414983e-02	ci left: 2.621669e-02	ci right 2.659064e-02	k: 74721	n:2830000
KS ci ratio: 2.407924e-01	ci left: 8.237210e-05	ci right 1.052440e-04	k: 264	n:2830000
MEF2D   2830000 perm   3988 sec   (710 perm/sec)   p_kst 9.328622e-05   p_cons 2.640318e-02   p_joint 2.155477e-05

Joint ci ratio: 4.978350e-01	ci left: 1.642967e-05	ci right 2.759043e-05	k: 61	n:2840000
Cons ci ratio: 1.412316e-02	ci left: 2.622332e-02	ci right 2.659666e-02	k: 75003	n:2840000
KS ci ratio: 2.407924e-01	ci left: 8.208206e-05	ci right 1.048734e-04	k: 264	n:2840000
MEF2D   2840000 perm   4014 sec   (707 perm/sec)   p_kst 9.295775e-05   p_cons 2.640951e-02   p_joint 2.147887e-05

Joint ci ratio: 4.978350e-01	ci left: 1.637203e-05	ci right 2.749362e-05	k: 61	n:2850000
Cons ci ratio: 1.409981e-02	ci left: 2.621837e-02	ci right 2.659101e-02	k: 75252	n:2850000
KS ci ratio: 2.407924e-01	ci left: 8.179405e-05	ci right 1.045054e-04	k: 264	n:2850000
MEF2D   2850000 perm   4040 sec   (705 perm/sec)   p_kst 9.263158e-05   p_cons 2.640421e-02   p_joint 2.140351e-05

Joint ci ratio: 4.978350e-01	ci left: 1.631478e-05	ci right 2.739749e-05	k: 61	n:2860000
Cons ci ratio: 1.407629e-02	ci left: 2.621450e-02	ci right 2.658646e-02	k: 75504	n:2860000
KS ci ratio: 2.403394e-01	ci left: 8.183663e-05	ci right 1.045107e-04	k: 265	n:2860000
MEF2D   2860000 perm   4065 sec   (704 perm/sec)   p_kst 9.265734e-05   p_cons 2.640000e-02   p_joint 2.132867e-05

Joint ci ratio: 4.978350e-01	ci left: 1.625794e-05	ci right 2.730203e-05	k: 61	n:2870000
Cons ci ratio: 1.404937e-02	ci left: 2.622350e-02	ci right 2.659487e-02	k: 75793	n:2870000
KS ci ratio: 2.403394e-01	ci left: 8.155149e-05	ci right 1.041466e-04	k: 265	n:2870000
MEF2D   2870000 perm   4091 sec   (702 perm/sec)   p_kst 9.233449e-05   p_cons 2.640871e-02   p_joint 2.125436e-05

Joint ci ratio: 4.978351e-01	ci left: 1.620148e-05	ci right 2.720723e-05	k: 61	n:2880000
Cons ci ratio: 1.402487e-02	ci left: 2.622414e-02	ci right 2.659487e-02	k: 76058	n:2880000
KS ci ratio: 2.403395e-01	ci left: 8.126832e-05	ci right 1.037849e-04	k: 265	n:2880000
MEF2D   2880000 perm   4118 sec   (699 perm/sec)   p_kst 9.201389e-05   p_cons 2.640903e-02   p_joint 2.118056e-05

Joint ci ratio: 4.978351e-01	ci left: 1.614542e-05	ci right 2.711309e-05	k: 61	n:2890000
Cons ci ratio: 1.400097e-02	ci left: 2.622305e-02	ci right 2.659312e-02	k: 76318	n:2890000
KS ci ratio: 2.403395e-01	ci left: 8.098711e-05	ci right 1.034258e-04	k: 265	n:2890000
MEF2D   2890000 perm   4144 sec   (697 perm/sec)   p_kst 9.169550e-05   p_cons 2.640761e-02   p_joint 2.110727e-05

Joint ci ratio: 4.978351e-01	ci left: 1.608975e-05	ci right 2.701959e-05	k: 61	n:2900000
Cons ci ratio: 1.397569e-02	ci left: 2.622747e-02	ci right 2.659693e-02	k: 76594	n:2900000
KS ci ratio: 2.403396e-01	ci left: 8.070785e-05	ci right 1.030692e-04	k: 265	n:2900000
MEF2D   2900000 perm   4171 sec   (695 perm/sec)   p_kst 9.137931e-05   p_cons 2.641172e-02   p_joint 2.103448e-05

Joint ci ratio: 4.978351e-01	ci left: 1.603446e-05	ci right 2.692674e-05	k: 61	n:2910000
Cons ci ratio: 1.394943e-02	ci left: 2.623596e-02	ci right 2.660484e-02	k: 76882	n:2910000
KS ci ratio: 2.398891e-01	ci left: 8.075347e-05	ci right 1.030793e-04	k: 266	n:2910000
MEF2D   2910000 perm   4198 sec   (693 perm/sec)   p_kst 9.140893e-05   p_cons 2.641993e-02   p_joint 2.096220e-05

Joint ci ratio: 4.978351e-01	ci left: 1.597955e-05	ci right 2.683453e-05	k: 61	n:2920000
Cons ci ratio: 1.392647e-02	ci left: 2.623280e-02	ci right 2.660102e-02	k: 77136	n:2920000
KS ci ratio: 2.398891e-01	ci left: 8.047692e-05	ci right 1.027263e-04	k: 266	n:2920000
MEF2D   2920000 perm   4224 sec   (691 perm/sec)   p_kst 9.109589e-05   p_cons 2.641644e-02   p_joint 2.089041e-05

Joint ci ratio: 4.978351e-01	ci left: 1.592501e-05	ci right 2.674294e-05	k: 61	n:2930000
Cons ci ratio: 1.390049e-02	ci left: 2.624122e-02	ci right 2.660887e-02	k: 77424	n:2930000
KS ci ratio: 2.394411e-01	ci left: 8.052305e-05	ci right 1.027374e-04	k: 267	n:2930000
MEF2D   2930000 perm   4251 sec   (689 perm/sec)   p_kst 9.112628e-05   p_cons 2.642457e-02   p_joint 2.081911e-05

Joint ci ratio: 4.978352e-01	ci left: 1.587084e-05	ci right 2.665198e-05	k: 61	n:2940000
Cons ci ratio: 1.387447e-02	ci left: 2.625026e-02	ci right 2.661734e-02	k: 77714	n:2940000
KS ci ratio: 2.394412e-01	ci left: 8.024916e-05	ci right 1.023880e-04	k: 267	n:2940000
MEF2D   2940000 perm   4277 sec   (687 perm/sec)   p_kst 9.081633e-05   p_cons 2.643333e-02   p_joint 2.074830e-05

Joint ci ratio: 4.978352e-01	ci left: 1.581704e-05	ci right 2.656163e-05	k: 61	n:2950000
Cons ci ratio: 1.385005e-02	ci left: 2.625383e-02	ci right 2.662032e-02	k: 77988	n:2950000
KS ci ratio: 2.394412e-01	ci left: 7.997713e-05	ci right 1.020409e-04	k: 267	n:2950000
MEF2D   2950000 perm   4304 sec   (685 perm/sec)   p_kst 9.050847e-05   p_cons 2.643661e-02   p_joint 2.067797e-05

Joint ci ratio: 4.938682e-01	ci left: 1.605917e-05	ci right 2.685168e-05	k: 62	n:2960000
Cons ci ratio: 1.382803e-02	ci left: 2.624897e-02	ci right 2.661480e-02	k: 78237	n:2960000
KS ci ratio: 2.389957e-01	ci left: 8.002453e-05	ci right 1.020542e-04	k: 268	n:2960000
MEF2D   2960000 perm   4331 sec   (683 perm/sec)   p_kst 9.054054e-05   p_cons 2.643142e-02   p_joint 2.094595e-05

Joint ci ratio: 4.938683e-01	ci left: 1.600510e-05	ci right 2.676127e-05	k: 62	n:2970000
Cons ci ratio: 1.380241e-02	ci left: 2.625789e-02	ci right 2.662316e-02	k: 78527	n:2970000
KS ci ratio: 2.381121e-01	ci left: 8.038824e-05	ci right 1.024242e-04	k: 270	n:2970000
MEF2D   2970000 perm   4357 sec   (682 perm/sec)   p_kst 9.090909e-05   p_cons 2.644007e-02   p_joint 2.087542e-05

Joint ci ratio: 4.652128e-01	ci left: 1.831160e-05	ci right 2.967803e-05	k: 70	n:2980000
Cons ci ratio: 1.378035e-02	ci left: 2.625405e-02	ci right 2.661868e-02	k: 78779	n:2980000
KS ci ratio: 2.376740e-01	ci left: 8.043405e-05	ci right 1.024360e-04	k: 271	n:2980000
MEF2D   2980000 perm   4384 sec   (680 perm/sec)   p_kst 9.093960e-05   p_cons 2.643591e-02   p_joint 2.348993e-05

Joint ci ratio: 4.652128e-01	ci left: 1.825036e-05	ci right 2.957877e-05	k: 70	n:2990000
Cons ci ratio: 1.375794e-02	ci left: 2.625190e-02	ci right 2.661590e-02	k: 79036	n:2990000
KS ci ratio: 2.372383e-01	ci left: 8.047960e-05	ci right 1.024477e-04	k: 272	n:2990000
MEF2D   2990000 perm   4410 sec   (678 perm/sec)   p_kst 9.096990e-05   p_cons 2.643344e-02   p_joint 2.341137e-05

Joint ci ratio: 4.652128e-01	ci left: 1.818952e-05	ci right 2.948017e-05	k: 70	n:3000000
Cons ci ratio: 1.373253e-02	ci left: 2.626140e-02	ci right 2.662485e-02	k: 79328	n:3000000
KS ci ratio: 2.368050e-01	ci left: 8.052487e-05	ci right 1.024593e-04	k: 273	n:3000000
MEF2D   3000000 perm   4438 sec   (676 perm/sec)   p_kst 9.100000e-05   p_cons 2.644267e-02   p_joint 2.333333e-05

Joint ci ratio: 4.619708e-01	ci left: 1.842250e-05	ci right 2.975301e-05	k: 71	n:3010000
Cons ci ratio: 1.370912e-02	ci left: 2.626387e-02	ci right 2.662674e-02	k: 79599	n:3010000
KS ci ratio: 2.363741e-01	ci left: 8.056988e-05	ci right 1.024708e-04	k: 274	n:3010000
MEF2D   3010000 perm   4464 sec   (674 perm/sec)   p_kst 9.102990e-05   p_cons 2.644485e-02   p_joint 2.358804e-05

Joint ci ratio: 4.619708e-01	ci left: 1.836150e-05	ci right 2.965449e-05	k: 71	n:3020000
Cons ci ratio: 1.368724e-02	ci left: 2.626106e-02	ci right 2.662330e-02	k: 79854	n:3020000
KS ci ratio: 2.363741e-01	ci left: 8.030309e-05	ci right 1.021315e-04	k: 274	n:3020000
MEF2D   3020000 perm   4491 sec   (672 perm/sec)   p_kst 9.072848e-05   p_cons 2.644172e-02   p_joint 2.350993e-05

Joint ci ratio: 4.619709e-01	ci left: 1.830090e-05	ci right 2.955662e-05	k: 71	n:3030000
Cons ci ratio: 1.366756e-02	ci left: 2.625036e-02	ci right 2.661193e-02	k: 80085	n:3030000
KS ci ratio: 2.363741e-01	ci left: 8.003806e-05	ci right 1.017944e-04	k: 274	n:3030000
MEF2D   3030000 perm   4518 sec   (671 perm/sec)   p_kst 9.042904e-05   p_cons 2.643069e-02   p_joint 2.343234e-05

Joint ci ratio: 4.619709e-01	ci left: 1.824070e-05	ci right 2.945940e-05	k: 71	n:3040000
Cons ci ratio: 1.364300e-02	ci left: 2.625843e-02	ci right 2.661945e-02	k: 80373	n:3040000
KS ci ratio: 2.355192e-01	ci left: 8.039379e-05	ci right 1.021563e-04	k: 276	n:3040000
MEF2D   3040000 perm   4546 sec   (669 perm/sec)   p_kst 9.078947e-05   p_cons 2.643849e-02   p_joint 2.335526e-05

Joint ci ratio: 4.619709e-01	ci left: 1.818089e-05	ci right 2.936281e-05	k: 71	n:3050000
Cons ci ratio: 1.362143e-02	ci left: 2.625565e-02	ci right 2.661607e-02	k: 80628	n:3050000
KS ci ratio: 2.350952e-01	ci left: 8.043874e-05	ci right 1.021685e-04	k: 277	n:3050000
MEF2D   3050000 perm   4573 sec   (667 perm/sec)   p_kst 9.081967e-05   p_cons 2.643541e-02   p_joint 2.327869e-05

Joint ci ratio: 4.587957e-01	ci left: 1.841036e-05	ci right 2.963131e-05	k: 72	n:3060000
Cons ci ratio: 1.359979e-02	ci left: 2.625355e-02	ci right 2.661336e-02	k: 80885	n:3060000
KS ci ratio: 2.346735e-01	ci left: 8.048344e-05	ci right 1.021806e-04	k: 278	n:3060000
MEF2D   3060000 perm   4600 sec   (665 perm/sec)   p_kst 9.084967e-05   p_cons 2.643301e-02   p_joint 2.352941e-05

Joint ci ratio: 4.587958e-01	ci left: 1.835039e-05	ci right 2.953479e-05	k: 72	n:3070000
Cons ci ratio: 1.358049e-02	ci left: 2.624302e-02	ci right 2.660217e-02	k: 81116	n:3070000
KS ci ratio: 2.338369e-01	ci left: 8.083451e-05	ci right 1.025374e-04	k: 280	n:3070000
MEF2D   3070000 perm   4628 sec   (663 perm/sec)   p_kst 9.120521e-05   p_cons 2.642215e-02   p_joint 2.345277e-05

Joint ci ratio: 4.587958e-01	ci left: 1.829081e-05	ci right 2.943890e-05	k: 72	n:3080000
Cons ci ratio: 1.355913e-02	ci left: 2.624065e-02	ci right 2.659920e-02	k: 81372	n:3080000
KS ci ratio: 2.338369e-01	ci left: 8.057206e-05	ci right 1.022045e-04	k: 280	n:3080000
MEF2D   3080000 perm   4656 sec   (662 perm/sec)   p_kst 9.090909e-05   p_cons 2.641948e-02   p_joint 2.337662e-05

Joint ci ratio: 4.587958e-01	ci left: 1.823162e-05	ci right 2.934363e-05	k: 72	n:3090000
Cons ci ratio: 1.353616e-02	ci left: 2.624475e-02	ci right 2.660274e-02	k: 81648	n:3090000
KS ci ratio: 2.338369e-01	ci left: 8.031131e-05	ci right 1.018737e-04	k: 280	n:3090000
MEF2D   3090000 perm   4684 sec   (660 perm/sec)   p_kst 9.061489e-05   p_cons 2.642330e-02   p_joint 2.330097e-05

Joint ci ratio: 4.526371e-01	ci left: 1.874389e-05	ci right 2.996772e-05	k: 74	n:3100000
Cons ci ratio: 1.351264e-02	ci left: 2.625139e-02	ci right 2.660885e-02	k: 81932	n:3100000
KS ci ratio: 2.321900e-01	ci left: 8.126725e-05	ci right 1.029106e-04	k: 284	n:3100000
MEF2D   3100000 perm   4711 sec   (658 perm/sec)   p_kst 9.161290e-05   p_cons 2.642968e-02   p_joint 2.387097e-05

Joint ci ratio: 4.496493e-01	ci left: 1.896862e-05	ci right 3.022922e-05	k: 75	n:3110000
Cons ci ratio: 1.349101e-02	ci left: 2.625126e-02	ci right 2.660814e-02	k: 82195	n:3110000
KS ci ratio: 2.317838e-01	ci left: 8.130880e-05	ci right 1.029199e-04	k: 285	n:3110000
MEF2D   3110000 perm   4740 sec   (656 perm/sec)   p_kst 9.163987e-05   p_cons 2.642926e-02   p_joint 2.411576e-05

Joint ci ratio: 4.496493e-01	ci left: 1.890782e-05	ci right 3.013233e-05	k: 75	n:3120000
Cons ci ratio: 1.346713e-02	ci left: 2.626008e-02	ci right 2.661644e-02	k: 82486	n:3120000
KS ci ratio: 2.317838e-01	ci left: 8.104819e-05	ci right 1.025900e-04	k: 285	n:3120000
MEF2D   3120000 perm   4767 sec   (654 perm/sec)   p_kst 9.134615e-05   p_cons 2.643782e-02   p_joint 2.403846e-05

Joint ci ratio: 4.496493e-01	ci left: 1.884741e-05	ci right 3.003606e-05	k: 75	n:3130000
Cons ci ratio: 1.344647e-02	ci left: 2.625706e-02	ci right 2.661283e-02	k: 82740	n:3130000
KS ci ratio: 2.313796e-01	ci left: 8.109021e-05	ci right 1.026003e-04	k: 286	n:3130000
MEF2D   3130000 perm   4795 sec   (653 perm/sec)   p_kst 9.137380e-05   p_cons 2.643450e-02   p_joint 2.396166e-05

Joint ci ratio: 4.467199e-01	ci left: 1.906990e-05	ci right 3.029460e-05	k: 76	n:3140000
Cons ci ratio: 1.342556e-02	ci left: 2.625533e-02	ci right 2.661051e-02	k: 82998	n:3140000
KS ci ratio: 2.309776e-01	ci left: 8.113198e-05	ci right 1.026104e-04	k: 287	n:3140000
MEF2D   3140000 perm   4824 sec   (651 perm/sec)   p_kst 9.140127e-05   p_cons 2.643248e-02   p_joint 2.420382e-05

Joint ci ratio: 4.467199e-01	ci left: 1.900936e-05	ci right 3.019843e-05	k: 76	n:3150000
Cons ci ratio: 1.340451e-02	ci left: 2.625456e-02	ci right 2.660917e-02	k: 83259	n:3150000
KS ci ratio: 2.309776e-01	ci left: 8.087442e-05	ci right 1.022847e-04	k: 287	n:3150000
MEF2D   3150000 perm   4852 sec   (649 perm/sec)   p_kst 9.111111e-05   p_cons 2.643143e-02   p_joint 2.412698e-05

Joint ci ratio: 4.438470e-01	ci left: 1.923017e-05	ci right 3.045459e-05	k: 77	n:3160000
Cons ci ratio: 1.338422e-02	ci left: 2.625127e-02	ci right 2.660530e-02	k: 83512	n:3160000
KS ci ratio: 2.297839e-01	ci left: 8.151307e-05	ci right 1.029650e-04	k: 290	n:3160000
MEF2D   3160000 perm   4881 sec   (647 perm/sec)   p_kst 9.177215e-05   p_cons 2.642785e-02   p_joint 2.436709e-05

Joint ci ratio: 4.438471e-01	ci left: 1.916951e-05	ci right 3.035852e-05	k: 77	n:3170000
Cons ci ratio: 1.336418e-02	ci left: 2.624737e-02	ci right 2.660081e-02	k: 83763	n:3170000
KS ci ratio: 2.286084e-01	ci left: 8.214797e-05	ci right 1.036408e-04	k: 293	n:3170000
MEF2D   3170000 perm   4909 sec   (646 perm/sec)   p_kst 9.242902e-05   p_cons 2.642366e-02   p_joint 2.429022e-05

Joint ci ratio: 4.438471e-01	ci left: 1.910923e-05	ci right 3.026305e-05	k: 77	n:3180000
Cons ci ratio: 1.334276e-02	ci left: 2.624914e-02	ci right 2.660204e-02	k: 84032	n:3180000
KS ci ratio: 2.286084e-01	ci left: 8.188965e-05	ci right 1.033149e-04	k: 293	n:3180000
MEF2D   3180000 perm   4938 sec   (644 perm/sec)   p_kst 9.213836e-05   p_cons 2.642516e-02   p_joint 2.421384e-05

Joint ci ratio: 4.410289e-01	ci left: 1.932787e-05	ci right 3.051637e-05	k: 78	n:3190000
Cons ci ratio: 1.332185e-02	ci left: 2.624934e-02	ci right 2.660168e-02	k: 84296	n:3190000
KS ci ratio: 2.286085e-01	ci left: 8.163294e-05	ci right 1.029911e-04	k: 293	n:3190000
MEF2D   3190000 perm   4966 sec   (642 perm/sec)   p_kst 9.184953e-05   p_cons 2.642508e-02   p_joint 2.445141e-05

Joint ci ratio: 4.382638e-01	ci left: 1.954537e-05	ci right 3.076790e-05	k: 79	n:3200000
Cons ci ratio: 1.330047e-02	ci left: 2.625171e-02	ci right 2.660352e-02	k: 84567	n:3200000
KS ci ratio: 2.274509e-01	ci left: 8.226179e-05	ci right 1.036602e-04	k: 296	n:3200000
MEF2D   3200000 perm   4995 sec   (641 perm/sec)   p_kst 9.250000e-05   p_cons 2.642719e-02   p_joint 2.468750e-05

Joint ci ratio: 4.382638e-01	ci left: 1.948448e-05	ci right 3.067205e-05	k: 79	n:3210000
Cons ci ratio: 1.328033e-02	ci left: 2.624973e-02	ci right 2.660097e-02	k: 84824	n:3210000
KS ci ratio: 2.270689e-01	ci left: 8.229931e-05	ci right 1.036665e-04	k: 297	n:3210000
MEF2D   3210000 perm   5024 sec   (639 perm/sec)   p_kst 9.252336e-05   p_cons 2.642492e-02   p_joint 2.461059e-05

Joint ci ratio: 4.355500e-01	ci left: 1.970037e-05	ci right 3.092131e-05	k: 80	n:3220000
Cons ci ratio: 1.325931e-02	ci left: 2.625147e-02	ci right 2.660217e-02	k: 85093	n:3220000
KS ci ratio: 2.266889e-01	ci left: 8.233664e-05	ci right 1.036727e-04	k: 298	n:3220000
MEF2D   3220000 perm   5053 sec   (637 perm/sec)   p_kst 9.254658e-05   p_cons 2.642640e-02   p_joint 2.484472e-05

Joint ci ratio: 4.355500e-01	ci left: 1.963937e-05	ci right 3.082558e-05	k: 80	n:3230000
Cons ci ratio: 1.323839e-02	ci left: 2.625320e-02	ci right 2.660337e-02	k: 85362	n:3230000
KS ci ratio: 2.263108e-01	ci left: 8.237376e-05	ci right 1.036789e-04	k: 299	n:3230000
MEF2D   3230000 perm   5082 sec   (636 perm/sec)   p_kst 9.256966e-05   p_cons 2.642786e-02   p_joint 2.476780e-05

Joint ci ratio: 4.328860e-01	ci left: 1.985366e-05	ci right 3.107262e-05	k: 81	n:3240000
Cons ci ratio: 1.321868e-02	ci left: 2.625062e-02	ci right 2.660023e-02	k: 85617	n:3240000
KS ci ratio: 2.259345e-01	ci left: 8.241068e-05	ci right 1.036850e-04	k: 300	n:3240000
MEF2D   3240000 perm   5112 sec   (634 perm/sec)   p_kst 9.259259e-05   p_cons 2.642500e-02   p_joint 2.500000e-05

Joint ci ratio: 4.302703e-01	ci left: 2.006683e-05	ci right 3.131794e-05	k: 82	n:3250000
Cons ci ratio: 1.319772e-02	ci left: 2.625326e-02	ci right 2.660235e-02	k: 85889	n:3250000
KS ci ratio: 2.255601e-01	ci left: 8.244740e-05	ci right 1.036910e-04	k: 301	n:3250000
MEF2D   3250000 perm   5141 sec   (632 perm/sec)   p_kst 9.261538e-05   p_cons 2.642738e-02   p_joint 2.523077e-05

Joint ci ratio: 4.277015e-01	ci left: 2.027890e-05	ci right 3.156156e-05	k: 83	n:3260000
Cons ci ratio: 1.317740e-02	ci left: 2.625375e-02	ci right 2.660230e-02	k: 86154	n:3260000
KS ci ratio: 2.244480e-01	ci left: 8.306288e-05	ci right 1.043449e-04	k: 304	n:3260000
MEF2D   3260000 perm   5170 sec   (631 perm/sec)   p_kst 9.325153e-05   p_cons 2.642761e-02   p_joint 2.546012e-05

Joint ci ratio: 4.251781e-01	ci left: 2.048986e-05	ci right 3.180349e-05	k: 84	n:3270000
Cons ci ratio: 1.315742e-02	ci left: 2.625333e-02	ci right 2.660134e-02	k: 86416	n:3270000
KS ci ratio: 2.237157e-01	ci left: 8.338616e-05	ci right 1.046717e-04	k: 306	n:3270000
MEF2D   3270000 perm   5200 sec   (629 perm/sec)   p_kst 9.357798e-05   p_cons 2.642691e-02   p_joint 2.568807e-05

Joint ci ratio: 4.251781e-01	ci left: 2.042739e-05	ci right 3.170652e-05	k: 84	n:3280000
Cons ci ratio: 1.313456e-02	ci left: 2.626445e-02	ci right 2.661200e-02	k: 86716	n:3280000
KS ci ratio: 2.233522e-01	ci left: 8.341974e-05	ci right 1.046745e-04	k: 307	n:3280000
MEF2D   3280000 perm   5229 sec   (627 perm/sec)   p_kst 9.359756e-05   p_cons 2.643780e-02   p_joint 2.560976e-05

Joint ci ratio: 4.251781e-01	ci left: 2.036530e-05	ci right 3.161015e-05	k: 84	n:3290000
Cons ci ratio: 1.311454e-02	ci left: 2.626490e-02	ci right 2.661192e-02	k: 86981	n:3290000
KS ci ratio: 2.229905e-01	ci left: 8.345315e-05	ci right 1.046773e-04	k: 308	n:3290000
MEF2D   3290000 perm   5258 sec   (626 perm/sec)   p_kst 9.361702e-05   p_cons 2.643799e-02   p_joint 2.553191e-05

Joint ci ratio: 4.251782e-01	ci left: 2.030359e-05	ci right 3.151436e-05	k: 84	n:3300000
Cons ci ratio: 1.309438e-02	ci left: 2.626626e-02	ci right 2.661276e-02	k: 87249	n:3300000
KS ci ratio: 2.226305e-01	ci left: 8.348638e-05	ci right 1.046800e-04	k: 309	n:3300000
MEF2D   3300000 perm   5287 sec   (624 perm/sec)   p_kst 9.363636e-05   p_cons 2.643909e-02   p_joint 2.545455e-05

Joint ci ratio: 4.251782e-01	ci left: 2.024225e-05	ci right 3.141915e-05	k: 84	n:3310000
Cons ci ratio: 1.307231e-02	ci left: 2.627543e-02	ci right 2.662147e-02	k: 87543	n:3310000
KS ci ratio: 2.219158e-01	ci left: 8.380474e-05	ci right 1.050016e-04	k: 311	n:3310000
MEF2D   3310000 perm   5317 sec   (623 perm/sec)   p_kst 9.395770e-05   p_cons 2.644804e-02   p_joint 2.537764e-05

Joint ci ratio: 4.251782e-01	ci left: 2.018128e-05	ci right 3.132452e-05	k: 84	n:3320000
Cons ci ratio: 1.305387e-02	ci left: 2.627074e-02	ci right 2.661623e-02	k: 87791	n:3320000
KS ci ratio: 2.215610e-01	ci left: 8.383680e-05	ci right 1.050032e-04	k: 312	n:3320000
MEF2D   3320000 perm   5347 sec   (621 perm/sec)   p_kst 9.397590e-05   p_cons 2.644307e-02   p_joint 2.530120e-05

Joint ci ratio: 4.251782e-01	ci left: 2.012068e-05	ci right 3.123045e-05	k: 84	n:3330000
Cons ci ratio: 1.303322e-02	ci left: 2.627507e-02	ci right 2.662005e-02	k: 88069	n:3330000
KS ci ratio: 2.201586e-01	ci left: 8.471979e-05	ci right 1.059554e-04	k: 316	n:3330000
MEF2D   3330000 perm   5377 sec   (619 perm/sec)   p_kst 9.489489e-05   p_cons 2.644715e-02   p_joint 2.522523e-05

Joint ci ratio: 4.251782e-01	ci left: 2.006043e-05	ci right 3.113695e-05	k: 84	n:3340000
Cons ci ratio: 1.301335e-02	ci left: 2.627667e-02	ci right 2.662115e-02	k: 88338	n:3340000
KS ci ratio: 2.198122e-01	ci left: 8.474905e-05	ci right 1.059540e-04	k: 317	n:3340000
MEF2D   3340000 perm   5406 sec   (618 perm/sec)   p_kst 9.491018e-05   p_cons 2.644850e-02   p_joint 2.514970e-05

Joint ci ratio: 4.251782e-01	ci left: 2.000055e-05	ci right 3.104400e-05	k: 84	n:3350000
Cons ci ratio: 1.299388e-02	ci left: 2.627708e-02	ci right 2.662105e-02	k: 88603	n:3350000
KS ci ratio: 2.194674e-01	ci left: 8.477815e-05	ci right 1.059527e-04	k: 318	n:3350000
MEF2D   3350000 perm   5436 sec   (616 perm/sec)   p_kst 9.492537e-05   p_cons 2.644866e-02   p_joint 2.507463e-05

Joint ci ratio: 4.251783e-01	ci left: 1.994103e-05	ci right 3.095161e-05	k: 84	n:3360000
Cons ci ratio: 1.297486e-02	ci left: 2.627601e-02	ci right 2.661945e-02	k: 88863	n:3360000
KS ci ratio: 2.194674e-01	ci left: 8.452583e-05	ci right 1.056373e-04	k: 318	n:3360000
MEF2D   3360000 perm   5466 sec   (615 perm/sec)   p_kst 9.464286e-05   p_cons 2.644732e-02   p_joint 2.500000e-05

Joint ci ratio: 4.226990e-01	ci left: 2.014693e-05	ci right 3.118798e-05	k: 85	n:3370000
Cons ci ratio: 1.295444e-02	ci left: 2.628085e-02	ci right 2.662382e-02	k: 89143	n:3370000
KS ci ratio: 2.191242e-01	ci left: 8.455545e-05	ci right 1.056369e-04	k: 319	n:3370000
MEF2D   3370000 perm   5496 sec   (613 perm/sec)   p_kst 9.465875e-05   p_cons 2.645193e-02   p_joint 2.522255e-05

Joint ci ratio: 4.202626e-01	ci left: 2.035179e-05	ci right 3.142278e-05	k: 86	n:3380000
Cons ci ratio: 1.293441e-02	ci left: 2.628449e-02	ci right 2.662697e-02	k: 89419	n:3380000
KS ci ratio: 2.177673e-01	ci left: 8.542398e-05	ci right 1.065724e-04	k: 323	n:3380000
MEF2D   3380000 perm   5527 sec   (612 perm/sec)   p_kst 9.556213e-05   p_cons 2.645533e-02   p_joint 2.544379e-05

Joint ci ratio: 4.178679e-01	ci left: 2.055563e-05	ci right 3.165601e-05	k: 87	n:3390000
Cons ci ratio: 1.291588e-02	ci left: 2.628252e-02	ci right 2.662448e-02	k: 89676	n:3390000
KS ci ratio: 2.170982e-01	ci left: 8.572984e-05	ci right 1.068801e-04	k: 325	n:3390000
MEF2D   3390000 perm   5557 sec   (610 perm/sec)   p_kst 9.587021e-05   p_cons 2.645310e-02   p_joint 2.566372e-05

Joint ci ratio: 4.178679e-01	ci left: 2.049518e-05	ci right 3.156290e-05	k: 87	n:3400000
Cons ci ratio: 1.289426e-02	ci left: 2.629317e-02	ci right 2.663469e-02	k: 89976	n:3400000
KS ci ratio: 2.170983e-01	ci left: 8.547769e-05	ci right 1.065657e-04	k: 325	n:3400000
MEF2D   3400000 perm   5588 sec   (608 perm/sec)   p_kst 9.558824e-05   p_cons 2.646353e-02   p_joint 2.558824e-05

Joint ci ratio: 4.178680e-01	ci left: 2.043507e-05	ci right 3.147034e-05	k: 87	n:3410000
Cons ci ratio: 1.287619e-02	ci left: 2.629002e-02	ci right 2.663102e-02	k: 90229	n:3410000
KS ci ratio: 2.170983e-01	ci left: 8.522702e-05	ci right 1.062532e-04	k: 325	n:3410000
MEF2D   3410000 perm   5618 sec   (607 perm/sec)   p_kst 9.530792e-05   p_cons 2.646012e-02   p_joint 2.551320e-05

Joint ci ratio: 5.717868e-01	ci left: 9.847321e-06	ci right 1.794076e-05	k: 46	n:3420000
Cons ci ratio: 1.285630e-02	ci left: 2.629447e-02	ci right 2.663499e-02	k: 90508	n:3420000
KS ci ratio: 2.161062e-01	ci left: 8.580743e-05	ci right 1.068672e-04	k: 328	n:3420000
MEF2D   3420000 perm   5649 sec   (605 perm/sec)   p_kst 9.590643e-05   p_cons 2.646433e-02   p_joint 1.345029e-05

Joint ci ratio: 5.717868e-01	ci left: 9.818611e-06	ci right 1.788846e-05	k: 46	n:3430000
Cons ci ratio: 1.283650e-02	ci left: 2.629889e-02	ci right 2.663894e-02	k: 90787	n:3430000
KS ci ratio: 2.157785e-01	ci left: 8.583304e-05	ci right 1.068630e-04	k: 329	n:3430000
MEF2D   3430000 perm   5679 sec   (604 perm/sec)   p_kst 9.591837e-05   p_cons 2.646851e-02   p_joint 1.341108e-05

Joint ci ratio: 5.717868e-01	ci left: 9.790069e-06	ci right 1.783646e-05	k: 46	n:3440000
Cons ci ratio: 1.281745e-02	ci left: 2.630067e-02	ci right 2.664024e-02	k: 91057	n:3440000
KS ci ratio: 2.157785e-01	ci left: 8.558353e-05	ci right 1.065523e-04	k: 329	n:3440000
MEF2D   3440000 perm   5710 sec   (602 perm/sec)   p_kst 9.563953e-05   p_cons 2.647006e-02   p_joint 1.337209e-05

Joint ci ratio: 5.717868e-01	ci left: 9.761692e-06	ci right 1.778476e-05	k: 46	n:3450000
Cons ci ratio: 1.279790e-02	ci left: 2.630476e-02	ci right 2.664386e-02	k: 91335	n:3450000
KS ci ratio: 2.157785e-01	ci left: 8.533546e-05	ci right 1.062435e-04	k: 329	n:3450000
MEF2D   3450000 perm   5741 sec   (601 perm/sec)   p_kst 9.536232e-05   p_cons 2.647391e-02   p_joint 1.333333e-05

Joint ci ratio: 5.657993e-01	ci left: 9.980893e-06	ci right 1.806355e-05	k: 47	n:3460000
Cons ci ratio: 1.278002e-02	ci left: 2.630249e-02	ci right 2.664108e-02	k: 91591	n:3460000
KS ci ratio: 2.151276e-01	ci left: 8.563567e-05	ci right 1.065456e-04	k: 331	n:3460000
MEF2D   3460000 perm   5772 sec   (599 perm/sec)   p_kst 9.566474e-05   p_cons 2.647139e-02   p_joint 1.358382e-05

Joint ci ratio: 5.657993e-01	ci left: 9.952129e-06	ci right 1.801150e-05	k: 47	n:3470000
Cons ci ratio: 1.276093e-02	ci left: 2.630540e-02	ci right 2.664352e-02	k: 91865	n:3470000
KS ci ratio: 2.151276e-01	ci left: 8.538888e-05	ci right 1.062385e-04	k: 331	n:3470000
MEF2D   3470000 perm   5802 sec   (598 perm/sec)   p_kst 9.538905e-05   p_cons 2.647406e-02   p_joint 1.354467e-05

Joint ci ratio: 5.657993e-01	ci left: 9.923531e-06	ci right 1.795974e-05	k: 47	n:3480000
Cons ci ratio: 1.274100e-02	ci left: 2.631202e-02	ci right 2.664969e-02	k: 92152	n:3480000
KS ci ratio: 2.148044e-01	ci left: 8.541540e-05	ci right 1.062361e-04	k: 332	n:3480000
MEF2D   3480000 perm   5834 sec   (596 perm/sec)   p_kst 9.540230e-05   p_cons 2.648046e-02   p_joint 1.350575e-05

Joint ci ratio: 5.657993e-01	ci left: 9.895097e-06	ci right 1.790828e-05	k: 47	n:3490000
Cons ci ratio: 1.272413e-02	ci left: 2.630660e-02	ci right 2.664375e-02	k: 92397	n:3490000
KS ci ratio: 2.144826e-01	ci left: 8.544178e-05	ci right 1.062336e-04	k: 333	n:3490000
MEF2D   3490000 perm   5865 sec   (595 perm/sec)   p_kst 9.541547e-05   p_cons 2.647479e-02   p_joint 1.346705e-05

Joint ci ratio: 5.657993e-01	ci left: 9.866825e-06	ci right 1.785711e-05	k: 47	n:3500000
Cons ci ratio: 1.270783e-02	ci left: 2.629922e-02	ci right 2.663585e-02	k: 92635	n:3500000
KS ci ratio: 2.138432e-01	ci left: 8.573845e-05	ci right 1.065321e-04	k: 335	n:3500000
MEF2D   3500000 perm   5896 sec   (594 perm/sec)   p_kst 9.571429e-05   p_cons 2.646714e-02   p_joint 1.342857e-05

Joint ci ratio: 5.657993e-01	ci left: 9.838715e-06	ci right 1.780624e-05	k: 47	n:3510000
Cons ci ratio: 1.268934e-02	ci left: 2.630098e-02	ci right 2.663713e-02	k: 92905	n:3510000
KS ci ratio: 2.135257e-01	ci left: 8.576383e-05	ci right 1.065287e-04	k: 336	n:3510000
MEF2D   3510000 perm   5928 sec   (592 perm/sec)   p_kst 9.572650e-05   p_cons 2.646866e-02   p_joint 1.339031e-05

Joint ci ratio: 5.657993e-01	ci left: 9.810764e-06	ci right 1.775565e-05	k: 47	n:3520000
Cons ci ratio: 1.267275e-02	ci left: 2.629536e-02	ci right 2.663099e-02	k: 93149	n:3520000
KS ci ratio: 2.135258e-01	ci left: 8.552018e-05	ci right 1.062261e-04	k: 336	n:3520000
MEF2D   3520000 perm   5959 sec   (591 perm/sec)   p_kst 9.545455e-05   p_cons 2.646278e-02   p_joint 1.335227e-05

Joint ci ratio: 5.657993e-01	ci left: 9.782971e-06	ci right 1.770535e-05	k: 47	n:3530000
Cons ci ratio: 1.265386e-02	ci left: 2.629937e-02	ci right 2.663455e-02	k: 93427	n:3530000
KS ci ratio: 2.135258e-01	ci left: 8.527792e-05	ci right 1.059251e-04	k: 336	n:3530000
MEF2D   3530000 perm   5991 sec   (589 perm/sec)   p_kst 9.518414e-05   p_cons 2.646657e-02   p_joint 1.331445e-05

Joint ci ratio: 5.657993e-01	ci left: 9.755336e-06	ci right 1.765534e-05	k: 47	n:3540000
Cons ci ratio: 1.263706e-02	ci left: 2.629519e-02	ci right 2.662988e-02	k: 93676	n:3540000
KS ci ratio: 2.125816e-01	ci left: 8.583926e-05	ci right 1.065185e-04	k: 339	n:3540000
MEF2D   3540000 perm   6022 sec   (588 perm/sec)   p_kst 9.576271e-05   p_cons 2.646215e-02   p_joint 1.327684e-05

Joint ci ratio: 5.657994e-01	ci left: 9.727856e-06	ci right 1.760561e-05	k: 47	n:3550000
Cons ci ratio: 1.262005e-02	ci left: 2.629216e-02	ci right 2.662635e-02	k: 93929	n:3550000
KS ci ratio: 2.125816e-01	ci left: 8.559746e-05	ci right 1.062185e-04	k: 339	n:3550000
MEF2D   3550000 perm   6054 sec   (586 perm/sec)   p_kst 9.549296e-05   p_cons 2.645887e-02   p_joint 1.323944e-05

Joint ci ratio: 5.657994e-01	ci left: 9.700530e-06	ci right 1.755615e-05	k: 47	n:3560000
Cons ci ratio: 1.260331e-02	ci left: 2.628831e-02	ci right 2.662201e-02	k: 94179	n:3560000
KS ci ratio: 2.119591e-01	ci left: 8.588895e-05	ci right 1.065117e-04	k: 341	n:3560000
MEF2D   3560000 perm   6085 sec   (585 perm/sec)   p_kst 9.578652e-05   p_cons 2.645478e-02   p_joint 1.320225e-05

Joint ci ratio: 5.657994e-01	ci left: 9.673358e-06	ci right 1.750697e-05	k: 47	n:3570000
Cons ci ratio: 1.258685e-02	ci left: 2.628365e-02	ci right 2.661684e-02	k: 94426	n:3570000
KS ci ratio: 2.116499e-01	ci left: 8.591362e-05	ci right 1.065083e-04	k: 342	n:3570000
MEF2D   3570000 perm   6117 sec   (584 perm/sec)   p_kst 9.579832e-05   p_cons 2.644986e-02   p_joint 1.316527e-05

Joint ci ratio: 5.657994e-01	ci left: 9.646337e-06	ci right 1.745807e-05	k: 47	n:3580000
Cons ci ratio: 1.256888e-02	ci left: 2.628541e-02	ci right 2.661815e-02	k: 94696	n:3580000
KS ci ratio: 2.116499e-01	ci left: 8.567364e-05	ci right 1.062108e-04	k: 342	n:3580000
MEF2D   3580000 perm   6149 sec   (582 perm/sec)   p_kst 9.553073e-05   p_cons 2.645140e-02   p_joint 1.312849e-05

Joint ci ratio: 5.657994e-01	ci left: 9.619467e-06	ci right 1.740944e-05	k: 47	n:3590000
Cons ci ratio: 1.255140e-02	ci left: 2.628550e-02	ci right 2.661777e-02	k: 94960	n:3590000
KS ci ratio: 2.116500e-01	ci left: 8.543499e-05	ci right 1.059150e-04	k: 342	n:3590000
MEF2D   3590000 perm   6181 sec   (581 perm/sec)   p_kst 9.526462e-05   p_cons 2.645125e-02   p_joint 1.309192e-05

Joint ci ratio: 5.657994e-01	ci left: 9.592746e-06	ci right 1.736108e-05	k: 47	n:3600000
Cons ci ratio: 1.253426e-02	ci left: 2.628448e-02	ci right 2.661628e-02	k: 95220	n:3600000
KS ci ratio: 2.116500e-01	ci left: 8.519767e-05	ci right 1.056207e-04	k: 342	n:3600000
MEF2D   3600000 perm   6213 sec   (579 perm/sec)   p_kst 9.500000e-05   p_cons 2.645000e-02   p_joint 1.305556e-05

Joint ci ratio: 5.657994e-01	ci left: 9.566174e-06	ci right 1.731299e-05	k: 47	n:3610000
Cons ci ratio: 1.251685e-02	ci left: 2.628485e-02	ci right 2.661619e-02	k: 95485	n:3610000
KS ci ratio: 2.113421e-01	ci left: 8.522400e-05	ci right 1.056198e-04	k: 343	n:3610000
MEF2D   3610000 perm   6245 sec   (578 perm/sec)   p_kst 9.501385e-05   p_cons 2.645014e-02   p_joint 1.301939e-05

Joint ci ratio: 5.657994e-01	ci left: 9.539748e-06	ci right 1.726517e-05	k: 47	n:3620000
Cons ci ratio: 1.249845e-02	ci left: 2.628962e-02	ci right 2.662053e-02	k: 95766	n:3620000
KS ci ratio: 2.110356e-01	ci left: 8.525021e-05	ci right 1.056189e-04	k: 344	n:3620000
MEF2D   3620000 perm   6277 sec   (577 perm/sec)   p_kst 9.502762e-05   p_cons 2.645470e-02   p_joint 1.298343e-05

Joint ci ratio: 5.599961e-01	ci left: 9.749716e-06	ci right 1.753193e-05	k: 48	n:3630000
Cons ci ratio: 1.248146e-02	ci left: 2.628887e-02	ci right 2.661932e-02	k: 96027	n:3630000
KS ci ratio: 2.107304e-01	ci left: 8.527630e-05	ci right 1.056179e-04	k: 345	n:3630000
MEF2D   3630000 perm   6309 sec   (575 perm/sec)   p_kst 9.504132e-05   p_cons 2.645372e-02   p_joint 1.322314e-05

Joint ci ratio: 5.599962e-01	ci left: 9.722931e-06	ci right 1.748376e-05	k: 48	n:3640000
Cons ci ratio: 1.246474e-02	ci left: 2.628731e-02	ci right 2.661729e-02	k: 96285	n:3640000
KS ci ratio: 2.101240e-01	ci left: 8.556252e-05	ci right 1.059061e-04	k: 347	n:3640000
MEF2D   3640000 perm   6342 sec   (574 perm/sec)   p_kst 9.532967e-05   p_cons 2.645192e-02   p_joint 1.318681e-05

Joint ci ratio: 5.599962e-01	ci left: 9.696292e-06	ci right 1.743586e-05	k: 48	n:3650000
Cons ci ratio: 1.244735e-02	ci left: 2.628876e-02	ci right 2.661830e-02	k: 96554	n:3650000
KS ci ratio: 2.098227e-01	ci left: 8.558767e-05	ci right 1.059043e-04	k: 348	n:3650000
MEF2D   3650000 perm   6374 sec   (573 perm/sec)   p_kst 9.534247e-05   p_cons 2.645315e-02   p_joint 1.315068e-05

Joint ci ratio: 5.599962e-01	ci left: 9.669800e-06	ci right 1.738822e-05	k: 48	n:3660000
Cons ci ratio: 1.242925e-02	ci left: 2.629347e-02	ci right 2.662258e-02	k: 96835	n:3660000
KS ci ratio: 2.098228e-01	ci left: 8.535382e-05	ci right 1.056150e-04	k: 348	n:3660000
MEF2D   3660000 perm   6407 sec   (571 perm/sec)   p_kst 9.508197e-05   p_cons 2.645765e-02   p_joint 1.311475e-05

Joint ci ratio: 5.599962e-01	ci left: 9.643451e-06	ci right 1.734084e-05	k: 48	n:3670000
Cons ci ratio: 1.241169e-02	ci left: 2.629625e-02	ci right 2.662493e-02	k: 97109	n:3670000
KS ci ratio: 2.095228e-01	ci left: 8.537942e-05	ci right 1.056140e-04	k: 349	n:3670000
MEF2D   3670000 perm   6440 sec   (570 perm/sec)   p_kst 9.509537e-05   p_cons 2.646022e-02   p_joint 1.307902e-05

Joint ci ratio: 5.599962e-01	ci left: 9.617246e-06	ci right 1.729372e-05	k: 48	n:3680000
Cons ci ratio: 1.239459e-02	ci left: 2.629739e-02	ci right 2.662564e-02	k: 97377	n:3680000
KS ci ratio: 2.092241e-01	ci left: 8.540491e-05	ci right 1.056130e-04	k: 350	n:3680000
MEF2D   3680000 perm   6473 sec   (568 perm/sec)   p_kst 9.510870e-05   p_cons 2.646114e-02   p_joint 1.304348e-05

Joint ci ratio: 5.599962e-01	ci left: 9.591183e-06	ci right 1.724686e-05	k: 48	n:3690000
Cons ci ratio: 1.237730e-02	ci left: 2.629961e-02	ci right 2.662742e-02	k: 97649	n:3690000
KS ci ratio: 2.092241e-01	ci left: 8.517346e-05	ci right 1.053267e-04	k: 350	n:3690000
MEF2D   3690000 perm   6507 sec   (567 perm/sec)   p_kst 9.485095e-05   p_cons 2.646314e-02   p_joint 1.300813e-05

Joint ci ratio: 5.599962e-01	ci left: 9.565261e-06	ci right 1.720024e-05	k: 48	n:3700000
Cons ci ratio: 1.236171e-02	ci left: 2.629508e-02	ci right 2.662242e-02	k: 97896	n:3700000
KS ci ratio: 2.089267e-01	ci left: 8.519938e-05	ci right 1.053265e-04	k: 351	n:3700000
MEF2D   3700000 perm   6540 sec   (566 perm/sec)   p_kst 9.486486e-05   p_cons 2.645838e-02   p_joint 1.297297e-05

Joint ci ratio: 5.599962e-01	ci left: 9.539479e-06	ci right 1.715388e-05	k: 48	n:3710000
Cons ci ratio: 1.234669e-02	ci left: 2.628843e-02	ci right 2.661528e-02	k: 98135	n:3710000
KS ci ratio: 2.083357e-01	ci left: 8.548065e-05	ci right 1.056098e-04	k: 353	n:3710000
MEF2D   3710000 perm   6572 sec   (565 perm/sec)   p_kst 9.514825e-05   p_cons 2.645148e-02   p_joint 1.293801e-05

Joint ci ratio: 5.599962e-01	ci left: 9.513835e-06	ci right 1.710777e-05	k: 48	n:3720000
Cons ci ratio: 1.232754e-02	ci left: 2.629923e-02	ci right 2.662570e-02	k: 98439	n:3720000
KS ci ratio: 2.083357e-01	ci left: 8.525086e-05	ci right 1.053259e-04	k: 353	n:3720000
MEF2D   3720000 perm   6605 sec   (563 perm/sec)   p_kst 9.489247e-05   p_cons 2.646210e-02   p_joint 1.290323e-05

Joint ci ratio: 5.599962e-01	ci left: 9.488329e-06	ci right 1.706190e-05	k: 48	n:3730000
Cons ci ratio: 1.231143e-02	ci left: 2.629768e-02	ci right 2.662370e-02	k: 98697	n:3730000
KS ci ratio: 2.083357e-01	ci left: 8.502231e-05	ci right 1.050435e-04	k: 353	n:3730000
MEF2D   3730000 perm   6639 sec   (562 perm/sec)   p_kst 9.463807e-05   p_cons 2.646032e-02   p_joint 1.286863e-05

Joint ci ratio: 5.599963e-01	ci left: 9.462959e-06	ci right 1.701628e-05	k: 48	n:3740000
Cons ci ratio: 1.229538e-02	ci left: 2.629613e-02	ci right 2.662171e-02	k: 98955	n:3740000
KS ci ratio: 2.080421e-01	ci left: 8.504842e-05	ci right 1.050439e-04	k: 354	n:3740000
MEF2D   3740000 perm   6672 sec   (561 perm/sec)   p_kst 9.465241e-05   p_cons 2.645856e-02   p_joint 1.283422e-05

Joint ci ratio: 5.599963e-01	ci left: 9.437724e-06	ci right 1.697091e-05	k: 48	n:3750000
Cons ci ratio: 1.227800e-02	ci left: 2.630045e-02	ci right 2.662562e-02	k: 99235	n:3750000
KS ci ratio: 2.080421e-01	ci left: 8.482162e-05	ci right 1.047638e-04	k: 354	n:3750000
MEF2D   3750000 perm   6705 sec   (559 perm/sec)   p_kst 9.440000e-05   p_cons 2.646267e-02   p_joint 1.280000e-05

Joint ci ratio: 5.599963e-01	ci left: 9.412624e-06	ci right 1.692577e-05	k: 48	n:3760000
Cons ci ratio: 1.226082e-02	ci left: 2.630421e-02	ci right 2.662897e-02	k: 99513	n:3760000
KS ci ratio: 2.077497e-01	ci left: 8.484814e-05	ci right 1.047650e-04	k: 355	n:3760000
MEF2D   3760000 perm   6739 sec   (558 perm/sec)   p_kst 9.441489e-05   p_cons 2.646622e-02   p_joint 1.276596e-05

Joint ci ratio: 5.599963e-01	ci left: 9.387657e-06	ci right 1.688088e-05	k: 48	n:3770000
Cons ci ratio: 1.224402e-02	ci left: 2.630663e-02	ci right 2.663097e-02	k: 99786	n:3770000
KS ci ratio: 2.077497e-01	ci left: 8.462308e-05	ci right 1.044871e-04	k: 355	n:3770000
MEF2D   3770000 perm   6772 sec   (557 perm/sec)   p_kst 9.416446e-05   p_cons 2.646844e-02   p_joint 1.273210e-05

Joint ci ratio: 5.599963e-01	ci left: 9.362821e-06	ci right 1.683622e-05	k: 48	n:3780000
Cons ci ratio: 1.222591e-02	ci left: 2.631484e-02	ci right 2.663880e-02	k: 100081	n:3780000
KS ci ratio: 2.077498e-01	ci left: 8.439921e-05	ci right 1.042107e-04	k: 355	n:3780000
MEF2D   3780000 perm   6806 sec   (555 perm/sec)   p_kst 9.391534e-05   p_cons 2.647646e-02   p_joint 1.269841e-05

Joint ci ratio: 5.599963e-01	ci left: 9.338117e-06	ci right 1.679180e-05	k: 48	n:3790000
Cons ci ratio: 1.220944e-02	ci left: 2.631643e-02	ci right 2.663997e-02	k: 100351	n:3790000
KS ci ratio: 2.074586e-01	ci left: 8.442665e-05	ci right 1.042133e-04	k: 356	n:3790000
MEF2D   3790000 perm   6840 sec   (554 perm/sec)   p_kst 9.393140e-05   p_cons 2.647784e-02   p_joint 1.266491e-05

Joint ci ratio: 5.599963e-01	ci left: 9.313543e-06	ci right 1.674761e-05	k: 48	n:3800000
Cons ci ratio: 1.219329e-02	ci left: 2.631696e-02	ci right 2.664008e-02	k: 100617	n:3800000
KS ci ratio: 2.068799e-01	ci left: 8.470349e-05	ci right 1.044926e-04	k: 358	n:3800000
MEF2D   3800000 perm   6874 sec   (553 perm/sec)   p_kst 9.421053e-05   p_cons 2.647816e-02   p_joint 1.263158e-05

Joint ci ratio: 5.599963e-01	ci left: 9.289098e-06	ci right 1.670365e-05	k: 48	n:3810000
Cons ci ratio: 1.217745e-02	ci left: 2.631644e-02	ci right 2.663913e-02	k: 100879	n:3810000
KS ci ratio: 2.063060e-01	ci left: 8.497895e-05	ci right 1.047704e-04	k: 360	n:3810000
MEF2D   3810000 perm   6907 sec   (552 perm/sec)   p_kst 9.448819e-05   p_cons 2.647743e-02   p_joint 1.259843e-05

Joint ci ratio: 5.599963e-01	ci left: 9.264781e-06	ci right 1.665992e-05	k: 48	n:3820000
Cons ci ratio: 1.216161e-02	ci left: 2.631619e-02	ci right 2.663845e-02	k: 101142	n:3820000
KS ci ratio: 2.063060e-01	ci left: 8.475650e-05	ci right 1.044961e-04	k: 360	n:3820000
MEF2D   3820000 perm   6941 sec   (550 perm/sec)   p_kst 9.424084e-05   p_cons 2.647696e-02   p_joint 1.256545e-05

Joint ci ratio: 5.599963e-01	ci left: 9.240591e-06	ci right 1.661642e-05	k: 48	n:3830000
Cons ci ratio: 1.214479e-02	ci left: 2.632037e-02	ci right 2.664223e-02	k: 101422	n:3830000
KS ci ratio: 2.054540e-01	ci left: 8.527811e-05	ci right 1.050469e-04	k: 363	n:3830000
MEF2D   3830000 perm   6975 sec   (549 perm/sec)   p_kst 9.477807e-05   p_cons 2.648094e-02   p_joint 1.253264e-05

Joint ci ratio: 5.599964e-01	ci left: 9.216527e-06	ci right 1.657315e-05	k: 48	n:3840000
Cons ci ratio: 1.212754e-02	ci left: 2.632660e-02	ci right 2.664808e-02	k: 101710	n:3840000
KS ci ratio: 2.054541e-01	ci left: 8.505603e-05	ci right 1.047733e-04	k: 363	n:3840000
MEF2D   3840000 perm   7011 sec   (548 perm/sec)   p_kst 9.453125e-05   p_cons 2.648698e-02   p_joint 1.250000e-05

Joint ci ratio: 5.599964e-01	ci left: 9.192588e-06	ci right 1.653011e-05	k: 48	n:3850000
Cons ci ratio: 1.211098e-02	ci left: 2.633021e-02	ci right 2.665129e-02	k: 101988	n:3850000
KS ci ratio: 2.054541e-01	ci left: 8.483511e-05	ci right 1.045012e-04	k: 363	n:3850000
MEF2D   3850000 perm   7047 sec   (546 perm/sec)   p_kst 9.428571e-05   p_cons 2.649039e-02   p_joint 1.246753e-05

Joint ci ratio: 6.121978e-01	ci left: 7.403271e-06	ci right 1.411102e-05	k: 40	n:3860000
Cons ci ratio: 1.209467e-02	ci left: 2.633302e-02	ci right 2.665370e-02	k: 102263	n:3860000
KS ci ratio: 2.054541e-01	ci left: 8.461532e-05	ci right 1.042305e-04	k: 363	n:3860000
MEF2D   3860000 perm   7082 sec   (545 perm/sec)   p_kst 9.404145e-05   p_cons 2.649301e-02   p_joint 1.036269e-05

Joint ci ratio: 5.489061e-01	ci left: 9.589411e-06	ci right 1.703324e-05	k: 50	n:3870000
Cons ci ratio: 1.208000e-02	ci left: 2.632912e-02	ci right 2.664936e-02	k: 102512	n:3870000
KS ci ratio: 2.046126e-01	ci left: 8.513208e-05	ci right 1.047761e-04	k: 366	n:3870000
MEF2D   3870000 perm   7118 sec   (544 perm/sec)   p_kst 9.457364e-05   p_cons 2.648889e-02   p_joint 1.291990e-05

Joint ci ratio: 5.489061e-01	ci left: 9.564696e-06	ci right 1.698934e-05	k: 50	n:3880000
Cons ci ratio: 1.206351e-02	ci left: 2.633321e-02	ci right 2.665306e-02	k: 102792	n:3880000
KS ci ratio: 2.043344e-01	ci left: 8.515720e-05	ci right 1.047769e-04	k: 367	n:3880000
MEF2D   3880000 perm   7154 sec   (542 perm/sec)   p_kst 9.458763e-05   p_cons 2.649278e-02   p_joint 1.288660e-05

Joint ci ratio: 5.489061e-01	ci left: 9.540108e-06	ci right 1.694566e-05	k: 50	n:3890000
Cons ci ratio: 1.204823e-02	ci left: 2.633241e-02	ci right 2.665184e-02	k: 103053	n:3890000
KS ci ratio: 2.043344e-01	ci left: 8.493829e-05	ci right 1.045076e-04	k: 367	n:3890000
MEF2D   3890000 perm   7191 sec   (541 perm/sec)   p_kst 9.434447e-05   p_cons 2.649177e-02   p_joint 1.285347e-05

Joint ci ratio: 5.489061e-01	ci left: 9.515646e-06	ci right 1.690221e-05	k: 50	n:3900000
Cons ci ratio: 1.203379e-02	ci left: 2.632829e-02	ci right 2.664729e-02	k: 103301	n:3900000
KS ci ratio: 2.043345e-01	ci left: 8.472050e-05	ci right 1.042396e-04	k: 367	n:3900000
MEF2D   3900000 perm   7227 sec   (540 perm/sec)   p_kst 9.410256e-05   p_cons 2.648744e-02   p_joint 1.282051e-05

Joint ci ratio: 6.048658e-01	ci left: 7.524897e-06	ci right 1.422533e-05	k: 41	n:3910000
Cons ci ratio: 1.201820e-02	ci left: 2.632929e-02	ci right 2.664788e-02	k: 103569	n:3910000
KS ci ratio: 2.043345e-01	ci left: 8.450382e-05	ci right 1.039730e-04	k: 367	n:3910000
MEF2D   3910000 perm   7265 sec   (538 perm/sec)   p_kst 9.386189e-05   p_cons 2.648824e-02   p_joint 1.048593e-05

Joint ci ratio: 6.048658e-01	ci left: 7.505701e-06	ci right 1.418904e-05	k: 41	n:3920000
Cons ci ratio: 1.200422e-02	ci left: 2.632367e-02	ci right 2.664182e-02	k: 103811	n:3920000
KS ci ratio: 2.040574e-01	ci left: 8.453031e-05	ci right 1.039759e-04	k: 368	n:3920000
MEF2D   3920000 perm   7302 sec   (537 perm/sec)   p_kst 9.387755e-05   p_cons 2.648240e-02   p_joint 1.045918e-05

Joint ci ratio: 6.048658e-01	ci left: 7.486602e-06	ci right 1.415293e-05	k: 41	n:3930000
Cons ci ratio: 1.198858e-02	ci left: 2.632544e-02	ci right 2.664320e-02	k: 104082	n:3930000
KS ci ratio: 2.040574e-01	ci left: 8.431522e-05	ci right 1.037114e-04	k: 368	n:3930000
MEF2D   3930000 perm   7338 sec   (536 perm/sec)   p_kst 9.363868e-05   p_cons 2.648397e-02   p_joint 1.043257e-05

Joint ci ratio: 6.048658e-01	ci left: 7.467601e-06	ci right 1.411701e-05	k: 41	n:3940000
Cons ci ratio: 1.197393e-02	ci left: 2.632315e-02	ci right 2.664049e-02	k: 104337	n:3940000
KS ci ratio: 2.037815e-01	ci left: 8.434207e-05	ci right 1.037149e-04	k: 369	n:3940000
MEF2D   3940000 perm   7374 sec   (534 perm/sec)   p_kst 9.365482e-05   p_cons 2.648147e-02   p_joint 1.040609e-05

Joint ci ratio: 6.048658e-01	ci left: 7.448696e-06	ci right 1.408127e-05	k: 41	n:3950000
Cons ci ratio: 1.195834e-02	ci left: 2.632517e-02	ci right 2.664211e-02	k: 104609	n:3950000
KS ci ratio: 2.029603e-01	ci left: 8.484936e-05	ci right 1.042504e-04	k: 372	n:3950000
MEF2D   3950000 perm   7411 sec   (533 perm/sec)   p_kst 9.417722e-05   p_cons 2.648329e-02   p_joint 1.037975e-05

Joint ci ratio: 6.048658e-01	ci left: 7.429886e-06	ci right 1.404571e-05	k: 41	n:3960000
Cons ci ratio: 1.194369e-02	ci left: 2.632339e-02	ci right 2.663993e-02	k: 104866	n:3960000
KS ci ratio: 2.021489e-01	ci left: 8.535425e-05	ci right 1.047831e-04	k: 375	n:3960000
MEF2D   3960000 perm   7447 sec   (532 perm/sec)   p_kst 9.469697e-05   p_cons 2.648131e-02   p_joint 1.035354e-05

Joint ci ratio: 6.048659e-01	ci left: 7.411171e-06	ci right 1.401033e-05	k: 41	n:3970000
Cons ci ratio: 1.192927e-02	ci left: 2.632088e-02	ci right 2.663699e-02	k: 105120	n:3970000
KS ci ratio: 2.021490e-01	ci left: 8.513925e-05	ci right 1.045192e-04	k: 375	n:3970000
MEF2D   3970000 perm   7485 sec   (530 perm/sec)   p_kst 9.445844e-05   p_cons 2.647859e-02   p_joint 1.032746e-05

Joint ci ratio: 6.048659e-01	ci left: 7.392549e-06	ci right 1.397513e-05	k: 41	n:3980000
Cons ci ratio: 1.191299e-02	ci left: 2.632664e-02	ci right 2.664239e-02	k: 105407	n:3980000
KS ci ratio: 2.021490e-01	ci left: 8.492534e-05	ci right 1.042566e-04	k: 375	n:3980000
MEF2D   3980000 perm   7523 sec   (529 perm/sec)   p_kst 9.422111e-05   p_cons 2.648417e-02   p_joint 1.030151e-05

Joint ci ratio: 6.048659e-01	ci left: 7.374022e-06	ci right 1.394011e-05	k: 41	n:3990000
Cons ci ratio: 1.189868e-02	ci left: 2.632413e-02	ci right 2.663947e-02	k: 105661	n:3990000
KS ci ratio: 2.021490e-01	ci left: 8.471249e-05	ci right 1.039953e-04	k: 375	n:3990000
MEF2D   3990000 perm   7559 sec   (528 perm/sec)   p_kst 9.398496e-05   p_cons 2.648145e-02   p_joint 1.027569e-05

Joint ci ratio: 6.048659e-01	ci left: 7.355587e-06	ci right 1.390526e-05	k: 41	n:4000000
Cons ci ratio: 1.188378e-02	ci left: 2.632437e-02	ci right 2.663932e-02	k: 105926	n:4000000
KS ci ratio: 2.021490e-01	ci left: 8.450071e-05	ci right 1.037353e-04	k: 375	n:4000000
MEF2D   4000000 perm   7596 sec   (527 perm/sec)   p_kst 9.375000e-05   p_cons 2.648150e-02   p_joint 1.025000e-05

Joint ci ratio: 6.048659e-01	ci left: 7.337244e-06	ci right 1.387058e-05	k: 41	n:4010000
Cons ci ratio: 1.186820e-02	ci left: 2.632784e-02	ci right 2.664242e-02	k: 106204	n:4010000
KS ci ratio: 2.021491e-01	ci left: 8.428998e-05	ci right 1.034766e-04	k: 375	n:4010000
MEF2D   4010000 perm   7635 sec   (525 perm/sec)   p_kst 9.351621e-05   p_cons 2.648479e-02   p_joint 1.022444e-05

Joint ci ratio: 6.048659e-01	ci left: 7.318992e-06	ci right 1.383608e-05	k: 41	n:4020000
Cons ci ratio: 1.185291e-02	ci left: 2.633031e-02	ci right 2.664450e-02	k: 106478	n:4020000
KS ci ratio: 2.018808e-01	ci left: 8.431648e-05	ci right 1.034805e-04	k: 376	n:4020000
MEF2D   4020000 perm   7672 sec   (524 perm/sec)   p_kst 9.353234e-05   p_cons 2.648706e-02   p_joint 1.019900e-05

Joint ci ratio: 6.048659e-01	ci left: 7.300830e-06	ci right 1.380174e-05	k: 41	n:4030000
Cons ci ratio: 1.183870e-02	ci left: 2.632831e-02	ci right 2.664210e-02	k: 106734	n:4030000
KS ci ratio: 2.016136e-01	ci left: 8.434286e-05	ci right 1.034844e-04	k: 377	n:4030000
MEF2D   4030000 perm   7710 sec   (523 perm/sec)   p_kst 9.354839e-05   p_cons 2.648486e-02   p_joint 1.017370e-05

Joint ci ratio: 6.048659e-01	ci left: 7.282759e-06	ci right 1.376758e-05	k: 41	n:4040000
Cons ci ratio: 1.182357e-02	ci left: 2.633051e-02	ci right 2.664393e-02	k: 107007	n:4040000
KS ci ratio: 2.010823e-01	ci left: 8.460418e-05	ci right 1.037482e-04	k: 379	n:4040000
MEF2D   4040000 perm   7747 sec   (521 perm/sec)   p_kst 9.381188e-05   p_cons 2.648688e-02   p_joint 1.014851e-05

Joint ci ratio: 6.048659e-01	ci left: 7.264777e-06	ci right 1.373359e-05	k: 41	n:4050000
Cons ci ratio: 1.180822e-02	ci left: 2.633394e-02	ci right 2.664698e-02	k: 107285	n:4050000
KS ci ratio: 2.008182e-01	ci left: 8.462978e-05	ci right 1.037514e-04	k: 380	n:4050000
MEF2D   4050000 perm   7784 sec   (520 perm/sec)   p_kst 9.382716e-05   p_cons 2.649012e-02   p_joint 1.012346e-05

Joint ci ratio: 6.048659e-01	ci left: 7.246883e-06	ci right 1.369976e-05	k: 41	n:4060000
Cons ci ratio: 1.179615e-02	ci left: 2.632335e-02	ci right 2.663595e-02	k: 107506	n:4060000
KS ci ratio: 2.002932e-01	ci left: 8.488920e-05	ci right 1.040131e-04	k: 382	n:4060000
MEF2D   4060000 perm   7821 sec   (519 perm/sec)   p_kst 9.408867e-05   p_cons 2.647931e-02   p_joint 1.009852e-05

Joint ci ratio: 6.048659e-01	ci left: 7.229078e-06	ci right 1.366610e-05	k: 41	n:4070000
Cons ci ratio: 1.177995e-02	ci left: 2.633094e-02	ci right 2.664320e-02	k: 107801	n:4070000
KS ci ratio: 1.997722e-01	ci left: 8.514742e-05	ci right 1.042736e-04	k: 384	n:4070000
MEF2D   4070000 perm   7858 sec   (518 perm/sec)   p_kst 9.434889e-05   p_cons 2.648673e-02   p_joint 1.007371e-05

Joint ci ratio: 6.048659e-01	ci left: 7.211359e-06	ci right 1.363261e-05	k: 41	n:4080000
Cons ci ratio: 1.176555e-02	ci left: 2.633092e-02	ci right 2.664279e-02	k: 108065	n:4080000
KS ci ratio: 1.984874e-01	ci left: 8.610312e-05	ci right 1.053045e-04	k: 389	n:4080000
MEF2D   4080000 perm   7895 sec   (517 perm/sec)   p_kst 9.534314e-05   p_cons 2.648652e-02   p_joint 1.004902e-05

Joint ci ratio: 6.048660e-01	ci left: 7.193728e-06	ci right 1.359927e-05	k: 41	n:4090000
Cons ci ratio: 1.175327e-02	ci left: 2.632188e-02	ci right 2.663331e-02	k: 108292	n:4090000
KS ci ratio: 1.984874e-01	ci left: 8.589260e-05	ci right 1.050470e-04	k: 389	n:4090000
MEF2D   4090000 perm   7933 sec   (516 perm/sec)   p_kst 9.511002e-05   p_cons 2.647726e-02   p_joint 1.002445e-05

Joint ci ratio: 6.048660e-01	ci left: 7.176182e-06	ci right 1.356610e-05	k: 41	n:4100000
Cons ci ratio: 1.173864e-02	ci left: 2.632334e-02	ci right 2.663440e-02	k: 108562	n:4100000
KS ci ratio: 1.982334e-01	ci left: 8.591490e-05	ci right 1.050468e-04	k: 390	n:4100000
MEF2D   4100000 perm   7971 sec   (514 perm/sec)   p_kst 9.512195e-05   p_cons 2.647854e-02   p_joint 1.000000e-05

Joint ci ratio: 6.048660e-01	ci left: 7.158722e-06	ci right 1.353310e-05	k: 41	n:4110000
Cons ci ratio: 1.172462e-02	ci left: 2.632237e-02	ci right 2.663304e-02	k: 108822	n:4110000
KS ci ratio: 1.982335e-01	ci left: 8.570586e-05	ci right 1.047912e-04	k: 390	n:4110000
MEF2D   4110000 perm   8009 sec   (513 perm/sec)   p_kst 9.489051e-05   p_cons 2.647737e-02   p_joint 9.975669e-06

Joint ci ratio: 6.048660e-01	ci left: 7.141346e-06	ci right 1.350025e-05	k: 41	n:4120000
Cons ci ratio: 1.171103e-02	ci left: 2.631971e-02	ci right 2.662999e-02	k: 109075	n:4120000
KS ci ratio: 1.982335e-01	ci left: 8.549783e-05	ci right 1.045369e-04	k: 390	n:4120000
MEF2D   4120000 perm   8046 sec   (512 perm/sec)   p_kst 9.466019e-05   p_cons 2.647451e-02   p_joint 9.951456e-06

Joint ci ratio: 6.048660e-01	ci left: 7.124055e-06	ci right 1.346756e-05	k: 41	n:4130000
Cons ci ratio: 1.169787e-02	ci left: 2.631537e-02	ci right 2.662525e-02	k: 109321	n:4130000
KS ci ratio: 1.979805e-01	ci left: 8.552094e-05	ci right 1.045379e-04	k: 391	n:4130000
MEF2D   4130000 perm   8084 sec   (511 perm/sec)   p_kst 9.467312e-05   p_cons 2.646998e-02   p_joint 9.927361e-06

Joint ci ratio: 6.048660e-01	ci left: 7.106847e-06	ci right 1.343503e-05	k: 41	n:4140000
Cons ci ratio: 1.168339e-02	ci left: 2.631707e-02	ci right 2.662659e-02	k: 109592	n:4140000
KS ci ratio: 1.977284e-01	ci left: 8.554394e-05	ci right 1.045389e-04	k: 392	n:4140000
MEF2D   4140000 perm   8122 sec   (510 perm/sec)   p_kst 9.468599e-05   p_cons 2.647150e-02   p_joint 9.903382e-06

Joint ci ratio: 6.048660e-01	ci left: 7.089722e-06	ci right 1.340266e-05	k: 41	n:4150000
Cons ci ratio: 1.167060e-02	ci left: 2.631156e-02	ci right 2.662067e-02	k: 109833	n:4150000
KS ci ratio: 1.977285e-01	ci left: 8.533781e-05	ci right 1.042870e-04	k: 392	n:4150000
MEF2D   4150000 perm   8159 sec   (509 perm/sec)   p_kst 9.445783e-05   p_cons 2.646578e-02   p_joint 9.879518e-06

Joint ci ratio: 6.048660e-01	ci left: 7.072679e-06	ci right 1.337044e-05	k: 41	n:4160000
Cons ci ratio: 1.165714e-02	ci left: 2.630919e-02	ci right 2.661791e-02	k: 110087	n:4160000
KS ci ratio: 1.974774e-01	ci left: 8.536117e-05	ci right 1.042885e-04	k: 393	n:4160000
MEF2D   4160000 perm   8198 sec   (507 perm/sec)   p_kst 9.447115e-05   p_cons 2.646322e-02   p_joint 9.855769e-06

Joint ci ratio: 6.048660e-01	ci left: 7.055718e-06	ci right 1.333838e-05	k: 41	n:4170000
Cons ci ratio: 1.164298e-02	ci left: 2.631018e-02	ci right 2.661854e-02	k: 110355	n:4170000
KS ci ratio: 1.969780e-01	ci left: 8.561240e-05	ci right 1.045417e-04	k: 395	n:4170000
MEF2D   4170000 perm   8236 sec   (506 perm/sec)   p_kst 9.472422e-05   p_cons 2.646403e-02   p_joint 9.832134e-06

Joint ci ratio: 6.048660e-01	ci left: 7.038839e-06	ci right 1.330647e-05	k: 41	n:4180000
Cons ci ratio: 1.162789e-02	ci left: 2.631546e-02	ci right 2.662347e-02	k: 110641	n:4180000
KS ci ratio: 1.967298e-01	ci left: 8.563503e-05	ci right 1.045426e-04	k: 396	n:4180000
MEF2D   4180000 perm   8274 sec   (505 perm/sec)   p_kst 9.473684e-05   p_cons 2.646914e-02   p_joint 9.808612e-06

Joint ci ratio: 6.048660e-01	ci left: 7.022039e-06	ci right 1.327471e-05	k: 41	n:4190000
Cons ci ratio: 1.161297e-02	ci left: 2.632024e-02	ci right 2.662791e-02	k: 110925	n:4190000
KS ci ratio: 1.967298e-01	ci left: 8.543065e-05	ci right 1.042931e-04	k: 396	n:4190000
MEF2D   4190000 perm   8313 sec   (504 perm/sec)   p_kst 9.451074e-05   p_cons 2.647375e-02   p_joint 9.785203e-06

Joint ci ratio: 6.048660e-01	ci left: 7.005320e-06	ci right 1.324310e-05	k: 41	n:4200000
Cons ci ratio: 1.159655e-02	ci left: 2.633188e-02	ci right 2.663925e-02	k: 111238	n:4200000
KS ci ratio: 1.964825e-01	ci left: 8.545362e-05	ci right 1.042946e-04	k: 397	n:4200000
MEF2D   4200000 perm   8351 sec   (503 perm/sec)   p_kst 9.452381e-05   p_cons 2.648524e-02   p_joint 9.761905e-06

Joint ci ratio: 5.977913e-01	ci left: 7.190011e-06	ci right 1.348496e-05	k: 42	n:4210000
Cons ci ratio: 1.158420e-02	ci left: 2.632570e-02	ci right 2.663267e-02	k: 111476	n:4210000
KS ci ratio: 1.957461e-01	ci left: 8.592824e-05	ci right 1.047944e-04	k: 400	n:4210000
MEF2D   4210000 perm   8390 sec   (502 perm/sec)   p_kst 9.501188e-05   p_cons 2.647886e-02   p_joint 9.976247e-06

Joint ci ratio: 5.909591e-01	ci left: 7.374254e-06	ci right 1.372526e-05	k: 43	n:4220000
Cons ci ratio: 1.157061e-02	ci left: 2.632522e-02	ci right 2.663183e-02	k: 111738	n:4220000
KS ci ratio: 1.952598e-01	ci left: 8.617536e-05	ci right 1.050432e-04	k: 402	n:4220000
MEF2D   4220000 perm   8429 sec   (501 perm/sec)   p_kst 9.526066e-05   p_cons 2.647820e-02   p_joint 1.018957e-05

Joint ci ratio: 5.843559e-01	ci left: 7.558040e-06	ci right 1.396403e-05	k: 44	n:4230000
Cons ci ratio: 1.155591e-02	ci left: 2.632993e-02	ci right 2.663620e-02	k: 112022	n:4230000
KS ci ratio: 1.945370e-01	ci left: 8.664625e-05	ci right 1.055386e-04	k: 405	n:4230000
MEF2D   4230000 perm   8468 sec   (500 perm/sec)   p_kst 9.574468e-05   p_cons 2.648274e-02   p_joint 1.040189e-05

Joint ci ratio: 5.779693e-01	ci left: 7.741357e-06	ci right 1.420128e-05	k: 45	n:4240000
Cons ci ratio: 1.154311e-02	ci left: 2.632639e-02	ci right 2.663227e-02	k: 112271	n:4240000
KS ci ratio: 1.942978e-01	ci left: 8.666626e-05	ci right 1.055370e-04	k: 406	n:4240000
MEF2D   4240000 perm   8505 sec   (499 perm/sec)   p_kst 9.575472e-05   p_cons 2.647901e-02   p_joint 1.061321e-05

Joint ci ratio: 5.779693e-01	ci left: 7.723142e-06	ci right 1.416787e-05	k: 45	n:4250000
Cons ci ratio: 1.152883e-02	ci left: 2.632967e-02	ci right 2.663521e-02	k: 112549	n:4250000
KS ci ratio: 1.940596e-01	ci left: 8.668620e-05	ci right 1.055354e-04	k: 407	n:4250000
MEF2D   4250000 perm   8545 sec   (497 perm/sec)   p_kst 9.576471e-05   p_cons 2.648212e-02   p_joint 1.058824e-05

Joint ci ratio: 5.717875e-01	ci left: 7.905593e-06	ci right 1.440316e-05	k: 46	n:4260000
Cons ci ratio: 1.151497e-02	ci left: 2.633130e-02	ci right 2.663648e-02	k: 112820	n:4260000
KS ci ratio: 1.938222e-01	ci left: 8.670606e-05	ci right 1.055338e-04	k: 408	n:4260000
MEF2D   4260000 perm   8583 sec   (496 perm/sec)   p_kst 9.577465e-05   p_cons 2.648357e-02   p_joint 1.079812e-05

Joint ci ratio: 5.717876e-01	ci left: 7.887079e-06	ci right 1.436942e-05	k: 46	n:4270000
Cons ci ratio: 1.150178e-02	ci left: 2.633011e-02	ci right 2.663493e-02	k: 113079	n:4270000
KS ci ratio: 1.933500e-01	ci left: 8.694868e-05	ci right 1.057777e-04	k: 410	n:4270000
MEF2D   4270000 perm   8623 sec   (495 perm/sec)   p_kst 9.601874e-05   p_cons 2.648220e-02   p_joint 1.077283e-05

Joint ci ratio: 5.717876e-01	ci left: 7.868651e-06	ci right 1.433585e-05	k: 46	n:4280000
Cons ci ratio: 1.148853e-02	ci left: 2.632940e-02	ci right 2.663386e-02	k: 113340	n:4280000
KS ci ratio: 1.928813e-01	ci left: 8.719023e-05	ci right 1.060204e-04	k: 412	n:4280000
MEF2D   4280000 perm   8662 sec   (494 perm/sec)   p_kst 9.626168e-05   p_cons 2.648131e-02   p_joint 1.074766e-05

Joint ci ratio: 5.717876e-01	ci left: 7.850309e-06	ci right 1.430243e-05	k: 46	n:4290000
Cons ci ratio: 1.147357e-02	ci left: 2.633659e-02	ci right 2.664074e-02	k: 113635	n:4290000
KS ci ratio: 1.928813e-01	ci left: 8.698699e-05	ci right 1.057733e-04	k: 412	n:4290000
MEF2D   4290000 perm   8702 sec   (493 perm/sec)   p_kst 9.603730e-05   p_cons 2.648834e-02   p_joint 1.072261e-05

Joint ci ratio: 5.717876e-01	ci left: 7.832052e-06	ci right 1.426917e-05	k: 46	n:4300000
Cons ci ratio: 1.146011e-02	ci left: 2.633726e-02	ci right 2.664105e-02	k: 113902	n:4300000
KS ci ratio: 1.926482e-01	ci left: 8.700603e-05	ci right 1.057711e-04	k: 413	n:4300000
MEF2D   4300000 perm   8741 sec   (492 perm/sec)   p_kst 9.604651e-05   p_cons 2.648884e-02   p_joint 1.069767e-05

Joint ci ratio: 5.717876e-01	ci left: 7.813881e-06	ci right 1.423607e-05	k: 46	n:4310000
Cons ci ratio: 1.144716e-02	ci left: 2.633584e-02	ci right 2.663927e-02	k: 114160	n:4310000
KS ci ratio: 1.924159e-01	ci left: 8.702499e-05	ci right 1.057689e-04	k: 414	n:4310000
MEF2D   4310000 perm   8781 sec   (491 perm/sec)   p_kst 9.605568e-05   p_cons 2.648724e-02   p_joint 1.067285e-05

Joint ci ratio: 5.658001e-01	ci left: 7.993953e-06	ci right 1.446758e-05	k: 47	n:4320000
Cons ci ratio: 1.143359e-02	ci left: 2.633743e-02	ci right 2.664052e-02	k: 114431	n:4320000
KS ci ratio: 1.924160e-01	ci left: 8.682355e-05	ci right 1.055240e-04	k: 414	n:4320000
MEF2D   4320000 perm   8820 sec   (490 perm/sec)   p_kst 9.583333e-05   p_cons 2.648866e-02   p_joint 1.087963e-05

Joint ci ratio: 5.658001e-01	ci left: 7.975491e-06	ci right 1.443416e-05	k: 47	n:4330000
Cons ci ratio: 1.141849e-02	ci left: 2.634615e-02	ci right 2.664894e-02	k: 114733	n:4330000
KS ci ratio: 1.924160e-01	ci left: 8.662303e-05	ci right 1.052803e-04	k: 414	n:4330000
MEF2D   4330000 perm   8861 sec   (489 perm/sec)   p_kst 9.561201e-05   p_cons 2.649723e-02   p_joint 1.085450e-05

Joint ci ratio: 5.658001e-01	ci left: 7.957115e-06	ci right 1.440090e-05	k: 47	n:4340000
Cons ci ratio: 1.140507e-02	ci left: 2.634748e-02	ci right 2.664992e-02	k: 115003	n:4340000
KS ci ratio: 1.924160e-01	ci left: 8.642343e-05	ci right 1.050378e-04	k: 414	n:4340000
MEF2D   4340000 perm   8901 sec   (488 perm/sec)   p_kst 9.539171e-05   p_cons 2.649839e-02   p_joint 1.082949e-05

Joint ci ratio: 5.658001e-01	ci left: 7.938822e-06	ci right 1.436780e-05	k: 47	n:4350000
Cons ci ratio: 1.139134e-02	ci left: 2.635041e-02	ci right 2.665252e-02	k: 115280	n:4350000
KS ci ratio: 1.924160e-01	ci left: 8.622476e-05	ci right 1.047963e-04	k: 414	n:4350000
MEF2D   4350000 perm   8941 sec   (487 perm/sec)   p_kst 9.517241e-05   p_cons 2.650115e-02   p_joint 1.080460e-05

Joint ci ratio: 5.658001e-01	ci left: 7.920614e-06	ci right 1.433485e-05	k: 47	n:4360000
Cons ci ratio: 1.137883e-02	ci left: 2.634806e-02	ci right 2.664981e-02	k: 115534	n:4360000
KS ci ratio: 1.921846e-01	ci left: 8.624531e-05	ci right 1.047963e-04	k: 415	n:4360000
MEF2D   4360000 perm   8981 sec   (485 perm/sec)   p_kst 9.518349e-05   p_cons 2.649862e-02   p_joint 1.077982e-05

Joint ci ratio: 5.599968e-01	ci left: 8.098732e-06	ci right 1.456314e-05	k: 48	n:4370000
Cons ci ratio: 1.136650e-02	ci left: 2.634504e-02	ci right 2.664643e-02	k: 115785	n:4370000
KS ci ratio: 1.919540e-01	ci left: 8.626578e-05	ci right 1.047963e-04	k: 416	n:4370000
MEF2D   4370000 perm   9021 sec   (484 perm/sec)   p_kst 9.519451e-05   p_cons 2.649542e-02   p_joint 1.098398e-05

Joint ci ratio: 5.599968e-01	ci left: 8.080241e-06	ci right 1.452989e-05	k: 48	n:4380000
Cons ci ratio: 1.135442e-02	ci left: 2.634113e-02	ci right 2.664215e-02	k: 116032	n:4380000
KS ci ratio: 1.919541e-01	ci left: 8.606883e-05	ci right 1.045571e-04	k: 416	n:4380000
MEF2D   4380000 perm   9061 sec   (483 perm/sec)   p_kst 9.497717e-05   p_cons 2.649132e-02   p_joint 1.095890e-05

Joint ci ratio: 5.599968e-01	ci left: 8.061835e-06	ci right 1.449679e-05	k: 48	n:4390000
Cons ci ratio: 1.134123e-02	ci left: 2.634245e-02	ci right 2.664314e-02	k: 116302	n:4390000
KS ci ratio: 1.917243e-01	ci left: 8.608962e-05	ci right 1.045576e-04	k: 417	n:4390000
MEF2D   4390000 perm   9101 sec   (482 perm/sec)   p_kst 9.498861e-05   p_cons 2.649248e-02   p_joint 1.093394e-05

Joint ci ratio: 5.543685e-01	ci left: 8.238754e-06	ci right 1.472284e-05	k: 49	n:4400000
Cons ci ratio: 1.132948e-02	ci left: 2.633743e-02	ci right 2.663774e-02	k: 116544	n:4400000
KS ci ratio: 1.914954e-01	ci left: 8.611034e-05	ci right 1.045581e-04	k: 418	n:4400000
MEF2D   4400000 perm   9142 sec   (481 perm/sec)   p_kst 9.500000e-05   p_cons 2.648727e-02   p_joint 1.113636e-05

Joint ci ratio: 5.543685e-01	ci left: 8.220072e-06	ci right 1.468945e-05	k: 49	n:4410000
Cons ci ratio: 1.131742e-02	ci left: 2.633401e-02	ci right 2.663396e-02	k: 116793	n:4410000
KS ci ratio: 1.914954e-01	ci left: 8.591507e-05	ci right 1.043211e-04	k: 418	n:4410000
MEF2D   4410000 perm   9182 sec   (480 perm/sec)   p_kst 9.478458e-05   p_cons 2.648367e-02   p_joint 1.111111e-05

Joint ci ratio: 5.543685e-01	ci left: 8.201475e-06	ci right 1.465622e-05	k: 49	n:4420000
Cons ci ratio: 1.130371e-02	ci left: 2.633828e-02	ci right 2.663791e-02	k: 117076	n:4420000
KS ci ratio: 1.912673e-01	ci left: 8.593610e-05	ci right 1.043221e-04	k: 419	n:4420000
MEF2D   4420000 perm   9222 sec   (479 perm/sec)   p_kst 9.479638e-05   p_cons 2.648778e-02   p_joint 1.108597e-05

Joint ci ratio: 5.543685e-01	ci left: 8.182961e-06	ci right 1.462313e-05	k: 49	n:4430000
Cons ci ratio: 1.129024e-02	ci left: 2.634162e-02	ci right 2.664094e-02	k: 117355	n:4430000
KS ci ratio: 1.910400e-01	ci left: 8.595705e-05	ci right 1.043231e-04	k: 420	n:4430000
MEF2D   4430000 perm   9262 sec   (478 perm/sec)   p_kst 9.480813e-05   p_cons 2.649097e-02   p_joint 1.106095e-05

Joint ci ratio: 5.489066e-01	ci left: 8.358336e-06	ci right 1.484654e-05	k: 50	n:4440000
Cons ci ratio: 1.127840e-02	ci left: 2.633777e-02	ci right 2.663672e-02	k: 117602	n:4440000
KS ci ratio: 1.908135e-01	ci left: 8.597791e-05	ci right 1.043242e-04	k: 421	n:4440000
MEF2D   4440000 perm   9303 sec   (477 perm/sec)   p_kst 9.481982e-05   p_cons 2.648694e-02   p_joint 1.126126e-05

Joint ci ratio: 5.489066e-01	ci left: 8.339554e-06	ci right 1.481318e-05	k: 50	n:4450000
Cons ci ratio: 1.126606e-02	ci left: 2.633640e-02	ci right 2.663501e-02	k: 117860	n:4450000
KS ci ratio: 1.903629e-01	ci left: 8.621270e-05	ci right 1.045606e-04	k: 423	n:4450000
MEF2D   4450000 perm   9344 sec   (476 perm/sec)   p_kst 9.505618e-05   p_cons 2.648539e-02   p_joint 1.123596e-05

Joint ci ratio: 5.489066e-01	ci left: 8.320855e-06	ci right 1.477997e-05	k: 50	n:4460000
Cons ci ratio: 1.125312e-02	ci left: 2.633794e-02	ci right 2.663622e-02	k: 118131	n:4460000
KS ci ratio: 1.899155e-01	ci left: 8.644648e-05	ci right 1.047959e-04	k: 425	n:4460000
MEF2D   4460000 perm   9385 sec   (475 perm/sec)   p_kst 9.529148e-05   p_cons 2.648677e-02   p_joint 1.121076e-05

Joint ci ratio: 5.489066e-01	ci left: 8.302240e-06	ci right 1.474690e-05	k: 50	n:4470000
Cons ci ratio: 1.124047e-02	ci left: 2.633836e-02	ci right 2.663630e-02	k: 118397	n:4470000
KS ci ratio: 1.894713e-01	ci left: 8.667927e-05	ci right 1.050301e-04	k: 427	n:4470000
MEF2D   4470000 perm   9427 sec   (474 perm/sec)   p_kst 9.552573e-05   p_cons 2.648702e-02   p_joint 1.118568e-05

Joint ci ratio: 5.489066e-01	ci left: 8.283708e-06	ci right 1.471398e-05	k: 50	n:4480000
Cons ci ratio: 1.122792e-02	ci left: 2.633855e-02	ci right 2.663617e-02	k: 118662	n:4480000
KS ci ratio: 1.894713e-01	ci left: 8.648579e-05	ci right 1.047956e-04	k: 427	n:4480000
MEF2D   4480000 perm   9468 sec   (473 perm/sec)   p_kst 9.531250e-05   p_cons 2.648705e-02   p_joint 1.116071e-05

Joint ci ratio: 5.489066e-01	ci left: 8.265259e-06	ci right 1.468121e-05	k: 50	n:4490000
Cons ci ratio: 1.121511e-02	ci left: 2.634008e-02	ci right 2.663737e-02	k: 118933	n:4490000
KS ci ratio: 1.892503e-01	ci left: 8.650533e-05	ci right 1.047955e-04	k: 428	n:4490000
MEF2D   4490000 perm   9509 sec   (472 perm/sec)   p_kst 9.532294e-05   p_cons 2.648842e-02   p_joint 1.113586e-05

Joint ci ratio: 5.489066e-01	ci left: 8.246892e-06	ci right 1.464859e-05	k: 50	n:4500000
Cons ci ratio: 1.120196e-02	ci left: 2.634337e-02	ci right 2.664035e-02	k: 119212	n:4500000
KS ci ratio: 1.892503e-01	ci left: 8.631309e-05	ci right 1.045626e-04	k: 428	n:4500000
MEF2D   4500000 perm   9551 sec   (471 perm/sec)   p_kst 9.511111e-05   p_cons 2.649156e-02   p_joint 1.111111e-05

Joint ci ratio: 5.489066e-01	ci left: 8.228606e-06	ci right 1.461611e-05	k: 50	n:4510000
Cons ci ratio: 1.118996e-02	ci left: 2.634157e-02	ci right 2.663820e-02	k: 119468	n:4510000
KS ci ratio: 1.888107e-01	ci left: 8.654419e-05	ci right 1.047952e-04	k: 430	n:4510000
MEF2D   4510000 perm   9593 sec   (470 perm/sec)   p_kst 9.534368e-05   p_cons 2.648958e-02   p_joint 1.108647e-05

Joint ci ratio: 5.489066e-01	ci left: 8.210401e-06	ci right 1.458377e-05	k: 50	n:4520000
Cons ci ratio: 1.117685e-02	ci left: 2.634506e-02	ci right 2.664139e-02	k: 119748	n:4520000
KS ci ratio: 1.885921e-01	ci left: 8.656350e-05	ci right 1.047950e-04	k: 431	n:4520000
MEF2D   4520000 perm   9634 sec   (469 perm/sec)   p_kst 9.535398e-05   p_cons 2.649292e-02   p_joint 1.106195e-05

Joint ci ratio: 5.489066e-01	ci left: 8.192276e-06	ci right 1.455158e-05	k: 50	n:4530000
Cons ci ratio: 1.116460e-02	ci left: 2.634480e-02	ci right 2.664079e-02	k: 120011	n:4530000
KS ci ratio: 1.881570e-01	ci left: 8.679310e-05	ci right 1.050260e-04	k: 433	n:4530000
MEF2D   4530000 perm   9675 sec   (468 perm/sec)   p_kst 9.558499e-05   p_cons 2.649249e-02   p_joint 1.103753e-05

Joint ci ratio: 5.489066e-01	ci left: 8.174232e-06	ci right 1.451953e-05	k: 50	n:4540000
Cons ci ratio: 1.115263e-02	ci left: 2.634344e-02	ci right 2.663910e-02	k: 120269	n:4540000
KS ci ratio: 1.879406e-01	ci left: 8.681182e-05	ci right 1.050253e-04	k: 434	n:4540000
MEF2D   4540000 perm   9717 sec   (467 perm/sec)   p_kst 9.559471e-05   p_cons 2.649097e-02   p_joint 1.101322e-05

Joint ci ratio: 5.489067e-01	ci left: 8.156266e-06	ci right 1.448762e-05	k: 50	n:4550000
Cons ci ratio: 1.114003e-02	ci left: 2.634516e-02	ci right 2.664050e-02	k: 120541	n:4550000
KS ci ratio: 1.870823e-01	ci left: 8.745888e-05	ci right 1.057148e-04	k: 438	n:4550000
MEF2D   4550000 perm   9759 sec   (466 perm/sec)   p_kst 9.626374e-05   p_cons 2.649253e-02   p_joint 1.098901e-05

Joint ci ratio: 5.489067e-01	ci left: 8.138380e-06	ci right 1.445584e-05	k: 50	n:4560000
Cons ci ratio: 1.112643e-02	ci left: 2.635168e-02	ci right 2.664673e-02	k: 120835	n:4560000
KS ci ratio: 1.870824e-01	ci left: 8.726708e-05	ci right 1.054830e-04	k: 438	n:4560000
MEF2D   4560000 perm   9801 sec   (465 perm/sec)   p_kst 9.605263e-05   p_cons 2.649890e-02   p_joint 1.096491e-05

Joint ci ratio: 5.489067e-01	ci left: 8.120572e-06	ci right 1.442421e-05	k: 50	n:4570000
Cons ci ratio: 1.111359e-02	ci left: 2.635490e-02	ci right 2.664964e-02	k: 121114	n:4570000
KS ci ratio: 1.870824e-01	ci left: 8.707613e-05	ci right 1.052522e-04	k: 438	n:4570000
MEF2D   4570000 perm   9842 sec   (464 perm/sec)   p_kst 9.584245e-05   p_cons 2.650197e-02   p_joint 1.094092e-05

Joint ci ratio: 5.489067e-01	ci left: 8.102841e-06	ci right 1.439272e-05	k: 50	n:4580000
Cons ci ratio: 1.110268e-02	ci left: 2.634939e-02	ci right 2.664378e-02	k: 121353	n:4580000
KS ci ratio: 1.868697e-01	ci left: 8.709413e-05	ci right 1.052509e-04	k: 439	n:4580000
MEF2D   4580000 perm   9883 sec   (463 perm/sec)   p_kst 9.585153e-05   p_cons 2.649629e-02   p_joint 1.091703e-05

Joint ci ratio: 5.489067e-01	ci left: 8.085188e-06	ci right 1.436136e-05	k: 50	n:4590000
Cons ci ratio: 1.109114e-02	ci left: 2.634695e-02	ci right 2.664101e-02	k: 121606	n:4590000
KS ci ratio: 1.866577e-01	ci left: 8.711206e-05	ci right 1.052496e-04	k: 440	n:4590000
MEF2D   4590000 perm   9925 sec   (462 perm/sec)   p_kst 9.586057e-05   p_cons 2.649368e-02   p_joint 1.089325e-05

Joint ci ratio: 5.489067e-01	ci left: 8.067611e-06	ci right 1.433014e-05	k: 50	n:4600000
Cons ci ratio: 1.107875e-02	ci left: 2.634864e-02	ci right 2.664239e-02	k: 121878	n:4600000
KS ci ratio: 1.866577e-01	ci left: 8.692268e-05	ci right 1.050208e-04	k: 440	n:4600000
MEF2D   4600000 perm   9967 sec   (462 perm/sec)   p_kst 9.565217e-05   p_cons 2.649522e-02   p_joint 1.086957e-05

Joint ci ratio: 5.489067e-01	ci left: 8.050111e-06	ci right 1.429906e-05	k: 50	n:4610000
Cons ci ratio: 1.106579e-02	ci left: 2.635314e-02	ci right 2.664659e-02	k: 122163	n:4610000
KS ci ratio: 1.864464e-01	ci left: 8.694092e-05	ci right 1.050201e-04	k: 441	n:4610000
MEF2D   4610000 perm   10009 sec   (461 perm/sec)   p_kst 9.566161e-05   p_cons 2.649957e-02   p_joint 1.084599e-05

Joint ci ratio: 5.489067e-01	ci left: 8.032686e-06	ci right 1.426811e-05	k: 50	n:4620000
Cons ci ratio: 1.105362e-02	ci left: 2.635416e-02	ci right 2.664730e-02	k: 122432	n:4620000
KS ci ratio: 1.864464e-01	ci left: 8.675274e-05	ci right 1.047927e-04	k: 441	n:4620000
MEF2D   4620000 perm   10051 sec   (460 perm/sec)   p_kst 9.545455e-05   p_cons 2.650043e-02   p_joint 1.082251e-05

Joint ci ratio: 5.436031e-01	ci left: 8.201490e-06	ci right 1.448282e-05	k: 51	n:4630000
Cons ci ratio: 1.104205e-02	ci left: 2.635259e-02	ci right 2.664541e-02	k: 122689	n:4630000
KS ci ratio: 1.864465e-01	ci left: 8.656536e-05	ci right 1.045664e-04	k: 441	n:4630000
MEF2D   4630000 perm   10093 sec   (459 perm/sec)   p_kst 9.524838e-05   p_cons 2.649870e-02   p_joint 1.101512e-05

Joint ci ratio: 5.436031e-01	ci left: 8.183814e-06	ci right 1.445161e-05	k: 51	n:4640000
Cons ci ratio: 1.103120e-02	ci left: 2.634781e-02	ci right 2.664028e-02	k: 122931	n:4640000
KS ci ratio: 1.864465e-01	ci left: 8.637880e-05	ci right 1.043410e-04	k: 441	n:4640000
MEF2D   4640000 perm   10135 sec   (458 perm/sec)   p_kst 9.504310e-05   p_cons 2.649375e-02   p_joint 1.099138e-05

Joint ci ratio: 5.436031e-01	ci left: 8.166215e-06	ci right 1.442053e-05	k: 51	n:4650000
Cons ci ratio: 1.102048e-02	ci left: 2.634262e-02	ci right 2.663475e-02	k: 123171	n:4650000
KS ci ratio: 1.862359e-01	ci left: 8.639806e-05	ci right 1.043417e-04	k: 442	n:4650000
MEF2D   4650000 perm   10177 sec   (457 perm/sec)   p_kst 9.505376e-05   p_cons 2.648839e-02   p_joint 1.096774e-05

Joint ci ratio: 5.436031e-01	ci left: 8.148691e-06	ci right 1.438958e-05	k: 51	n:4660000
Cons ci ratio: 1.100933e-02	ci left: 2.633959e-02	ci right 2.663139e-02	k: 123421	n:4660000
KS ci ratio: 1.862359e-01	ci left: 8.621266e-05	ci right 1.041178e-04	k: 442	n:4660000
MEF2D   4660000 perm   10219 sec   (456 perm/sec)   p_kst 9.484979e-05   p_cons 2.648519e-02   p_joint 1.094421e-05

Joint ci ratio: 5.436031e-01	ci left: 8.131242e-06	ci right 1.435877e-05	k: 51	n:4670000
Cons ci ratio: 1.099721e-02	ci left: 2.634127e-02	ci right 2.663276e-02	k: 123693	n:4670000
KS ci ratio: 1.858169e-01	ci left: 8.643637e-05	ci right 1.043431e-04	k: 444	n:4670000
MEF2D   4670000 perm   10262 sec   (455 perm/sec)   p_kst 9.507495e-05   p_cons 2.648672e-02   p_joint 1.092077e-05

Joint ci ratio: 5.436031e-01	ci left: 8.113867e-06	ci right 1.432809e-05	k: 51	n:4680000
Cons ci ratio: 1.098513e-02	ci left: 2.634295e-02	ci right 2.663413e-02	k: 123965	n:4680000
KS ci ratio: 1.856085e-01	ci left: 8.645542e-05	ci right 1.043437e-04	k: 445	n:4680000
MEF2D   4680000 perm   10304 sec   (454 perm/sec)   p_kst 9.508547e-05   p_cons 2.648825e-02   p_joint 1.089744e-05

Joint ci ratio: 5.436031e-01	ci left: 8.096567e-06	ci right 1.429754e-05	k: 51	n:4690000
Cons ci ratio: 1.097350e-02	ci left: 2.634270e-02	ci right 2.663358e-02	k: 124228	n:4690000
KS ci ratio: 1.847817e-01	ci left: 8.708442e-05	ci right 1.050136e-04	k: 449	n:4690000
MEF2D   4690000 perm   10347 sec   (453 perm/sec)   p_kst 9.573561e-05   p_cons 2.648785e-02   p_joint 1.087420e-05

Joint ci ratio: 5.436031e-01	ci left: 8.079340e-06	ci right 1.426712e-05	k: 51	n:4700000
Cons ci ratio: 1.096141e-02	ci left: 2.634479e-02	ci right 2.663537e-02	k: 124502	n:4700000
KS ci ratio: 1.847817e-01	ci left: 8.689914e-05	ci right 1.047902e-04	k: 449	n:4700000
MEF2D   4700000 perm   10391 sec   (452 perm/sec)   p_kst 9.553191e-05   p_cons 2.648979e-02   p_joint 1.085106e-05

Joint ci ratio: 5.436031e-01	ci left: 8.062186e-06	ci right 1.423683e-05	k: 51	n:4710000
Cons ci ratio: 1.094944e-02	ci left: 2.634645e-02	ci right 2.663672e-02	k: 124774	n:4710000
KS ci ratio: 1.845767e-01	ci left: 8.691714e-05	ci right 1.047898e-04	k: 450	n:4710000
MEF2D   4710000 perm   10434 sec   (451 perm/sec)   p_kst 9.554140e-05   p_cons 2.649130e-02   p_joint 1.082803e-05

Joint ci ratio: 5.436031e-01	ci left: 8.045106e-06	ci right 1.420667e-05	k: 51	n:4720000
Cons ci ratio: 1.093788e-02	ci left: 2.634641e-02	ci right 2.663637e-02	k: 125038	n:4720000
KS ci ratio: 1.845768e-01	ci left: 8.673299e-05	ci right 1.045678e-04	k: 450	n:4720000
MEF2D   4720000 perm   10478 sec   (450 perm/sec)   p_kst 9.533898e-05   p_cons 2.649110e-02   p_joint 1.080508e-05

Joint ci ratio: 5.436031e-01	ci left: 8.028097e-06	ci right 1.417663e-05	k: 51	n:4730000
Cons ci ratio: 1.092707e-02	ci left: 2.634300e-02	ci right 2.663264e-02	k: 125286	n:4730000
KS ci ratio: 1.843725e-01	ci left: 8.675127e-05	ci right 1.045679e-04	k: 451	n:4730000
MEF2D   4730000 perm   10521 sec   (450 perm/sec)   p_kst 9.534884e-05   p_cons 2.648753e-02   p_joint 1.078224e-05

Joint ci ratio: 5.436032e-01	ci left: 8.011160e-06	ci right 1.414672e-05	k: 51	n:4740000
Cons ci ratio: 1.091509e-02	ci left: 2.634528e-02	ci right 2.663462e-02	k: 125561	n:4740000
KS ci ratio: 1.839659e-01	ci left: 8.697075e-05	ci right 1.047886e-04	k: 453	n:4740000
MEF2D   4740000 perm   10564 sec   (449 perm/sec)   p_kst 9.556962e-05   p_cons 2.648966e-02   p_joint 1.075949e-05

Joint ci ratio: 5.384503e-01	ci left: 8.176029e-06	ci right 1.435599e-05	k: 52	n:4750000
Cons ci ratio: 1.090488e-02	ci left: 2.633936e-02	ci right 2.662837e-02	k: 125797	n:4750000
KS ci ratio: 1.837636e-01	ci left: 8.698849e-05	ci right 1.047882e-04	k: 454	n:4750000
MEF2D   4750000 perm   10607 sec   (448 perm/sec)   p_kst 9.557895e-05   p_cons 2.648358e-02   p_joint 1.094737e-05

Joint ci ratio: 5.384504e-01	ci left: 8.158852e-06	ci right 1.432583e-05	k: 52	n:4760000
Cons ci ratio: 1.089394e-02	ci left: 2.633704e-02	ci right 2.662573e-02	k: 126050	n:4760000
KS ci ratio: 1.829611e-01	ci left: 8.760751e-05	ci right 1.054470e-04	k: 458	n:4760000
MEF2D   4760000 perm   10650 sec   (447 perm/sec)   p_kst 9.621849e-05   p_cons 2.648109e-02   p_joint 1.092437e-05

Joint ci ratio: 5.384504e-01	ci left: 8.141748e-06	ci right 1.429580e-05	k: 52	n:4770000
Cons ci ratio: 1.088171e-02	ci left: 2.634099e-02	ci right 2.662940e-02	k: 126333	n:4770000
KS ci ratio: 1.825638e-01	ci left: 8.782395e-05	ci right 1.056643e-04	k: 460	n:4770000
MEF2D   4770000 perm   10693 sec   (446 perm/sec)   p_kst 9.643606e-05   p_cons 2.648491e-02   p_joint 1.090147e-05

Joint ci ratio: 5.384504e-01	ci left: 8.124715e-06	ci right 1.426589e-05	k: 52	n:4780000
Cons ci ratio: 1.087032e-02	ci left: 2.634117e-02	ci right 2.662928e-02	k: 126598	n:4780000
KS ci ratio: 1.825638e-01	ci left: 8.764022e-05	ci right 1.054433e-04	k: 460	n:4780000
MEF2D   4780000 perm   10737 sec   (445 perm/sec)   p_kst 9.623431e-05   p_cons 2.648494e-02   p_joint 1.087866e-05

Joint ci ratio: 5.384504e-01	ci left: 8.107753e-06	ci right 1.423611e-05	k: 52	n:4790000
Cons ci ratio: 1.085931e-02	ci left: 2.633969e-02	ci right 2.662748e-02	k: 126855	n:4790000
KS ci ratio: 1.825638e-01	ci left: 8.745725e-05	ci right 1.052232e-04	k: 460	n:4790000
MEF2D   4790000 perm   10781 sec   (444 perm/sec)   p_kst 9.603340e-05   p_cons 2.648330e-02   p_joint 1.085595e-05

Joint ci ratio: 5.384504e-01	ci left: 8.090862e-06	ci right 1.420645e-05	k: 52	n:4800000
Cons ci ratio: 1.084882e-02	ci left: 2.633592e-02	ci right 2.662340e-02	k: 127101	n:4800000
KS ci ratio: 1.823661e-01	ci left: 8.747387e-05	ci right 1.052218e-04	k: 461	n:4800000
MEF2D   4800000 perm   10824 sec   (443 perm/sec)   p_kst 9.604167e-05   p_cons 2.647937e-02   p_joint 1.083333e-05

Joint ci ratio: 5.384504e-01	ci left: 8.074041e-06	ci right 1.417692e-05	k: 52	n:4810000
Cons ci ratio: 1.083709e-02	ci left: 2.633819e-02	ci right 2.662538e-02	k: 127376	n:4810000
KS ci ratio: 1.823661e-01	ci left: 8.729201e-05	ci right 1.050030e-04	k: 461	n:4810000
MEF2D   4810000 perm   10868 sec   (443 perm/sec)   p_kst 9.584200e-05   p_cons 2.648150e-02   p_joint 1.081081e-05

Joint ci ratio: 5.334414e-01	ci left: 8.236657e-06	ci right 1.438282e-05	k: 53	n:4820000
Cons ci ratio: 1.082509e-02	ci left: 2.634189e-02	ci right 2.662880e-02	k: 127658	n:4820000
KS ci ratio: 1.821691e-01	ci left: 8.730891e-05	ci right 1.050021e-04	k: 462	n:4820000
MEF2D   4820000 perm   10912 sec   (442 perm/sec)   p_kst 9.585062e-05   p_cons 2.648506e-02   p_joint 1.099585e-05

Joint ci ratio: 5.334414e-01	ci left: 8.219604e-06	ci right 1.435304e-05	k: 53	n:4830000
Cons ci ratio: 1.081309e-02	ci left: 2.634579e-02	ci right 2.663242e-02	k: 127941	n:4830000
KS ci ratio: 1.819727e-01	ci left: 8.732575e-05	ci right 1.050012e-04	k: 463	n:4830000
MEF2D   4830000 perm   10957 sec   (441 perm/sec)   p_kst 9.585921e-05   p_cons 2.648882e-02   p_joint 1.097308e-05

Joint ci ratio: 5.334414e-01	ci left: 8.202621e-06	ci right 1.432339e-05	k: 53	n:4840000
Cons ci ratio: 1.080161e-02	ci left: 2.634740e-02	ci right 2.663374e-02	k: 128213	n:4840000
KS ci ratio: 1.819727e-01	ci left: 8.714532e-05	ci right 1.047842e-04	k: 463	n:4840000
MEF2D   4840000 perm   11001 sec   (440 perm/sec)   p_kst 9.566116e-05   p_cons 2.649029e-02   p_joint 1.095041e-05

Joint ci ratio: 5.334414e-01	ci left: 8.185709e-06	ci right 1.429385e-05	k: 53	n:4850000
Cons ci ratio: 1.079150e-02	ci left: 2.634263e-02	ci right 2.662865e-02	k: 128454	n:4850000
KS ci ratio: 1.819727e-01	ci left: 8.696564e-05	ci right 1.045682e-04	k: 463	n:4850000
MEF2D   4850000 perm   11046 sec   (439 perm/sec)   p_kst 9.546392e-05   p_cons 2.648536e-02   p_joint 1.092784e-05

Joint ci ratio: 5.334414e-01	ci left: 8.168866e-06	ci right 1.426444e-05	k: 53	n:4860000
Cons ci ratio: 1.078056e-02	ci left: 2.634199e-02	ci right 2.662771e-02	k: 128715	n:4860000
KS ci ratio: 1.813872e-01	ci left: 8.737591e-05	ci right 1.049983e-04	k: 466	n:4860000
MEF2D   4860000 perm   11090 sec   (438 perm/sec)   p_kst 9.588477e-05   p_cons 2.648457e-02   p_joint 1.090535e-05

Joint ci ratio: 5.334414e-01	ci left: 8.152092e-06	ci right 1.423515e-05	k: 53	n:4870000
Cons ci ratio: 1.076862e-02	ci left: 2.634626e-02	ci right 2.663171e-02	k: 129000	n:4870000
KS ci ratio: 1.811933e-01	ci left: 8.739251e-05	ci right 1.049974e-04	k: 467	n:4870000
MEF2D   4870000 perm   11134 sec   (437 perm/sec)   p_kst 9.589322e-05   p_cons 2.648871e-02   p_joint 1.088296e-05

Joint ci ratio: 5.334414e-01	ci left: 8.135387e-06	ci right 1.420598e-05	k: 53	n:4880000
Cons ci ratio: 1.075813e-02	ci left: 2.634378e-02	ci right 2.662892e-02	k: 129252	n:4880000
KS ci ratio: 1.810001e-01	ci left: 8.740906e-05	ci right 1.049964e-04	k: 468	n:4880000
MEF2D   4880000 perm   11178 sec   (437 perm/sec)   p_kst 9.590164e-05   p_cons 2.648607e-02   p_joint 1.086066e-05

Joint ci ratio: 5.285697e-01	ci left: 8.295811e-06	ci right 1.440862e-05	k: 54	n:4890000
Cons ci ratio: 1.074686e-02	ci left: 2.634517e-02	ci right 2.663003e-02	k: 129523	n:4890000
KS ci ratio: 1.810001e-01	ci left: 8.723031e-05	ci right 1.047817e-04	k: 468	n:4890000
MEF2D   4890000 perm   11222 sec   (436 perm/sec)   p_kst 9.570552e-05   p_cons 2.648732e-02   p_joint 1.104294e-05

Joint ci ratio: 5.285697e-01	ci left: 8.278880e-06	ci right 1.437922e-05	k: 54	n:4900000
Cons ci ratio: 1.073614e-02	ci left: 2.634412e-02	ci right 2.662868e-02	k: 129782	n:4900000
KS ci ratio: 1.810001e-01	ci left: 8.705229e-05	ci right 1.045679e-04	k: 468	n:4900000
MEF2D   4900000 perm   11266 sec   (435 perm/sec)   p_kst 9.551020e-05   p_cons 2.648612e-02   p_joint 1.102041e-05

Joint ci ratio: 5.285697e-01	ci left: 8.262019e-06	ci right 1.434993e-05	k: 54	n:4910000
Cons ci ratio: 1.072443e-02	ci left: 2.634795e-02	ci right 2.663224e-02	k: 130065	n:4910000
KS ci ratio: 1.808074e-01	ci left: 8.706944e-05	ci right 1.045678e-04	k: 469	n:4910000
MEF2D   4910000 perm   11310 sec   (434 perm/sec)   p_kst 9.551935e-05   p_cons 2.648982e-02   p_joint 1.099796e-05

Joint ci ratio: 5.238290e-01	ci left: 8.421459e-06	ci right 1.455080e-05	k: 55	n:4920000
Cons ci ratio: 1.071357e-02	ci left: 2.634791e-02	ci right 2.663191e-02	k: 130329	n:4920000
KS ci ratio: 1.804240e-01	ci left: 8.728059e-05	ci right 1.047801e-04	k: 471	n:4920000
MEF2D   4920000 perm   11355 sec   (433 perm/sec)   p_kst 9.573171e-05   p_cons 2.648963e-02   p_joint 1.117886e-05

Joint ci ratio: 5.238290e-01	ci left: 8.404377e-06	ci right 1.452129e-05	k: 55	n:4930000
Cons ci ratio: 1.070235e-02	ci left: 2.634970e-02	ci right 2.663342e-02	k: 130602	n:4930000
KS ci ratio: 1.800429e-01	ci left: 8.749093e-05	ci right 1.049915e-04	k: 473	n:4930000
MEF2D   4930000 perm   11400 sec   (432 perm/sec)   p_kst 9.594320e-05   p_cons 2.649128e-02   p_joint 1.115619e-05

Joint ci ratio: 5.238290e-01	ci left: 8.387364e-06	ci right 1.449189e-05	k: 55	n:4940000
Cons ci ratio: 1.069126e-02	ci left: 2.635107e-02	ci right 2.663451e-02	k: 130873	n:4940000
KS ci ratio: 1.798533e-01	ci left: 8.750714e-05	ci right 1.049905e-04	k: 474	n:4940000
MEF2D   4940000 perm   11446 sec   (432 perm/sec)   p_kst 9.595142e-05   p_cons 2.649251e-02   p_joint 1.113360e-05

Joint ci ratio: 5.238290e-01	ci left: 8.370420e-06	ci right 1.446261e-05	k: 55	n:4950000
Cons ci ratio: 1.068079e-02	ci left: 2.634962e-02	ci right 2.663276e-02	k: 131130	n:4950000
KS ci ratio: 1.794758e-01	ci left: 8.771622e-05	ci right 1.052006e-04	k: 476	n:4950000
MEF2D   4950000 perm   11493 sec   (431 perm/sec)   p_kst 9.616162e-05   p_cons 2.649091e-02   p_joint 1.111111e-05

Joint ci ratio: 5.192136e-01	ci left: 8.528599e-06	ci right 1.466140e-05	k: 56	n:4960000
Cons ci ratio: 1.067072e-02	ci left: 2.634636e-02	ci right 2.662920e-02	k: 131378	n:4960000
KS ci ratio: 1.791007e-01	ci left: 8.792451e-05	ci right 1.054098e-04	k: 478	n:4960000
MEF2D   4960000 perm   11539 sec   (430 perm/sec)   p_kst 9.637097e-05   p_cons 2.648750e-02   p_joint 1.129032e-05

Joint ci ratio: 5.192137e-01	ci left: 8.511439e-06	ci right 1.463190e-05	k: 56	n:4970000
Cons ci ratio: 1.066002e-02	ci left: 2.634632e-02	ci right 2.662888e-02	k: 131642	n:4970000
KS ci ratio: 1.787279e-01	ci left: 8.813199e-05	ci right 1.056181e-04	k: 480	n:4970000
MEF2D   4970000 perm   11584 sec   (429 perm/sec)   p_kst 9.657948e-05   p_cons 2.648732e-02   p_joint 1.126761e-05

Joint ci ratio: 5.192137e-01	ci left: 8.494348e-06	ci right 1.460252e-05	k: 56	n:4980000
Cons ci ratio: 1.065063e-02	ci left: 2.634008e-02	ci right 2.662232e-02	k: 131875	n:4980000
KS ci ratio: 1.785424e-01	ci left: 8.814685e-05	ci right 1.056158e-04	k: 481	n:4980000
MEF2D   4980000 perm   11629 sec   (428 perm/sec)   p_kst 9.658635e-05   p_cons 2.648092e-02   p_joint 1.124498e-05

Joint ci ratio: 5.192137e-01	ci left: 8.477325e-06	ci right 1.457325e-05	k: 56	n:4990000
Cons ci ratio: 1.064073e-02	ci left: 2.633646e-02	ci right 2.661840e-02	k: 132121	n:4990000
KS ci ratio: 1.783575e-01	ci left: 8.816165e-05	ci right 1.056135e-04	k: 482	n:4990000
MEF2D   4990000 perm   11674 sec   (427 perm/sec)   p_kst 9.659319e-05   p_cons 2.647715e-02   p_joint 1.122244e-05

Joint ci ratio: 5.192137e-01	ci left: 8.460370e-06	ci right 1.454411e-05	k: 56	n:5000000
Cons ci ratio: 1.063028e-02	ci left: 2.633565e-02	ci right 2.661730e-02	k: 132381	n:5000000
KS ci ratio: 1.781732e-01	ci left: 8.817640e-05	ci right 1.056112e-04	k: 483	n:5000000
MEF2D   5000000 perm   11719 sec   (427 perm/sec)   p_kst 9.660000e-05   p_cons 2.647620e-02   p_joint 1.120000e-05

Outputting figure to mutsig2_images.part000000000104/MEF2D.3_1610_5000000_9.66e-05_0.026476_1.12e-05.png
                gene_name: MEF2D
               theta_stop: 0.52 
                    nperm: 5000000 
                     p_ks: 9.66e-05 
        ci_ks_bounds_left: 8.82e-05 
       ci_ks_bounds_right: 0.00011 
                   p_cons: 0.026 
      ci_cons_bounds_left: 0.026 
     ci_cons_bounds_right: 0.027 
                  p_joint: 1.12e-05 
     ci_joint_bounds_left: 8.46e-06 
    ci_joint_bounds_right: 1.45e-05 

Current progress: 50 percent done.
MEGF10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.670614e-02	ci left: 1.622916e-01	ci right 1.771013e-01	k: 1696	n:10000
Cons ci ratio: 2.468251e-01	ci left: 2.155910e-02	ci right 2.772208e-02	k: 245	n:10000
KS ci ratio: 7.614384e-02	ci left: 2.014608e-01	ci right 2.175088e-01	k: 2094	n:10000
MEGF10   10000 perm   2 sec   (4770 perm/sec)   p_kst 2.094000e-01   p_cons 2.450000e-02   p_joint 1.696000e-01

Joint ci ratio: 6.165079e-02	ci left: 1.629409e-01	ci right 1.733558e-01	k: 3362	n:20000
Cons ci ratio: 1.673511e-01	ci left: 2.446191e-02	ci right 2.897711e-02	k: 533	n:20000
KS ci ratio: 5.447628e-02	ci left: 2.000171e-01	ci right 2.112686e-01	k: 4112	n:20000
MEGF10   20000 perm   5 sec   (4292 perm/sec)   p_kst 2.056000e-01   p_cons 2.665000e-02   p_joint 1.681000e-01

Joint ci ratio: 5.152433e-02	ci left: 1.575500e-01	ci right 1.659156e-01	k: 4851	n:30000
Cons ci ratio: 1.363805e-01	ci left: 2.496955e-02	ci right 2.865619e-02	k: 803	n:30000
KS ci ratio: 4.420268e-02	ci left: 2.030883e-01	ci right 2.123017e-01	k: 6230	n:30000
MEGF10   30000 perm   7 sec   (4102 perm/sec)   p_kst 2.076667e-01   p_cons 2.676667e-02   p_joint 1.617000e-01

Joint ci ratio: 4.618252e-02	ci left: 1.490888e-01	ci right 1.561617e-01	k: 6104	n:40000
Cons ci ratio: 1.172691e-01	ci left: 2.557923e-02	ci right 2.878991e-02	k: 1086	n:40000
KS ci ratio: 3.819370e-02	ci left: 2.044533e-01	ci right 2.124391e-01	k: 8337	n:40000
MEGF10   40000 perm   10 sec   (3971 perm/sec)   p_kst 2.084250e-01   p_cons 2.715000e-02   p_joint 1.526000e-01

Joint ci ratio: 3.638796e-02	ci left: 1.849410e-01	ci right 1.918153e-01	k: 9418	n:50000
Cons ci ratio: 1.040167e-01	ci left: 2.618152e-02	ci right 2.907367e-02	k: 1380	n:50000
KS ci ratio: 3.418120e-02	ci left: 2.046879e-01	ci right 2.118260e-01	k: 10412	n:50000
MEGF10   50000 perm   13 sec   (3871 perm/sec)   p_kst 2.082400e-01   p_cons 2.760000e-02   p_joint 1.883600e-01

Joint ci ratio: 2.726527e-02	ci left: 2.527272e-01	ci right 2.597297e-01	k: 15373	n:60000
Cons ci ratio: 9.428903e-02	ci left: 2.667822e-02	ci right 2.933437e-02	k: 1679	n:60000
KS ci ratio: 3.120242e-02	ci left: 2.050068e-01	ci right 2.115215e-01	k: 12495	n:60000
MEGF10   60000 perm   16 sec   (3786 perm/sec)   p_kst 2.082500e-01   p_cons 2.798333e-02   p_joint 2.562167e-01

Outputting figure to mutsig2_images.part000000000104/MEGF10.3_3519_60000_0.20825_0.027983_0.25622.png
                gene_name: MEGF10
               theta_stop: 0.094 
                    nperm: 60000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.028 
      ci_cons_bounds_left: 0.027 
     ci_cons_bounds_right: 0.029 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 52 percent done.
MEGF11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.208866e-02	ci left: 2.760670e-01	ci right 2.938584e-01	k: 2849	n:10000
Cons ci ratio: 5.131657e-02	ci left: 3.589352e-01	ci right 3.779415e-01	k: 3684	n:10000
KS ci ratio: 6.025129e-02	ci left: 2.883517e-01	ci right 3.063665e-01	k: 2973	n:10000
MEGF11   10000 perm   2 sec   (5463 perm/sec)   p_kst 2.973000e-01   p_cons 3.684000e-01   p_joint 2.849000e-01

Outputting figure to mutsig2_images.part000000000104/MEGF11.3_3223_10000_0.2973_0.3684_0.2849.png
                gene_name: MEGF11
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 55 percent done.
MEMO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.159520e-02	ci left: 4.604773e-01	ci right 4.801400e-01	k: 4703	n:10000
Cons ci ratio: 2.758983e-02	ci left: 6.593767e-01	ci right 6.779249e-01	k: 6687	n:10000
KS ci ratio: 6.348859e-02	ci left: 2.671559e-01	ci right 2.847748e-01	k: 2759	n:10000
MEMO1   10000 perm   2 sec   (6056 perm/sec)   p_kst 2.759000e-01   p_cons 6.687000e-01   p_joint 4.703000e-01

Outputting figure to mutsig2_images.part000000000104/MEMO1.3_930_10000_0.2759_0.6687_0.4703.png
                gene_name: MEMO1
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 57 percent done.
MEN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.182965e-02	ci left: 4.576816e-01	ci right 4.773374e-01	k: 4675	n:10000
KS ci ratio: 3.423102e-02	ci left: 5.575209e-01	ci right 5.770399e-01	k: 5673	n:10000
MEN1   10000 perm   2 sec   (5814 perm/sec)   p_kst 5.673000e-01   p_cons 4.675000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000104/MEN1.3_1884_10000_0.5673_0.4675_1.png
                gene_name: MEN1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 60 percent done.
MEOX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.369573e-02	ci left: 2.658691e-01	ci right 2.834624e-01	k: 2746	n:10000
Cons ci ratio: 1.409920e-02	ci left: 8.790966e-01	ci right 8.916780e-01	k: 8855	n:10000
KS ci ratio: 7.630513e-02	ci left: 2.007708e-01	ci right 2.167992e-01	k: 2087	n:10000
MEOX2   10000 perm   2 sec   (6090 perm/sec)   p_kst 2.087000e-01   p_cons 8.855000e-01   p_joint 2.746000e-01

Outputting figure to mutsig2_images.part000000000104/MEOX2.3_927_10000_0.2087_0.8855_0.2746.png
                gene_name: MEOX2
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 62 percent done.
METT10D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.317031e-02	ci left: 2.147744e-01	ci right 2.311873e-01	k: 2229	n:10000
KS ci ratio: 1.359396e-02	ci left: 8.864693e-01	ci right 8.987010e-01	k: 8927	n:10000
METT10D   10000 perm   2 sec   (6007 perm/sec)   p_kst 8.927000e-01   p_cons 2.229000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000104/METT10D.3_1725_10000_0.8927_0.2229_1.png
                gene_name: METT10D
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 64 percent done.
METTL8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.342080e-02	ci left: 3.405470e-01	ci right 3.593405e-01	k: 3499	n:10000
Cons ci ratio: 3.597175e-02	ci left: 5.329749e-01	ci right 5.526002e-01	k: 5428	n:10000
KS ci ratio: 6.216491e-02	ci left: 2.755719e-01	ci right 2.933539e-01	k: 2844	n:10000
METTL8   10000 perm   2 sec   (6251 perm/sec)   p_kst 2.844000e-01   p_cons 5.428000e-01   p_joint 3.499000e-01

Outputting figure to mutsig2_images.part000000000104/METTL8.3_1260_10000_0.2844_0.5428_0.3499.png
                gene_name: METTL8
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 67 percent done.
MED16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.181286e-02	ci left: 4.578813e-01	ci right 4.775376e-01	k: 4677	n:10000
Cons ci ratio: 2.148471e-02	ci left: 7.606116e-01	ci right 7.772314e-01	k: 7690	n:10000
KS ci ratio: 8.585446e-02	ci left: 1.650429e-01	ci right 1.799484e-01	k: 1724	n:10000
MED16   10000 perm   2 sec   (5711 perm/sec)   p_kst 1.724000e-01   p_cons 7.690000e-01   p_joint 4.677000e-01

Outputting figure to mutsig2_images.part000000000104/MED16.2_2694_10000_0.1724_0.769_0.4677.png
                gene_name: MED16
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 69 percent done.
MED18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.352252e-03	ci left: 9.712187e-01	ci right 9.775008e-01	k: 9745	n:10000
Cons ci ratio: 4.245653e-02	ci left: 4.502943e-01	ci right 4.699290e-01	k: 4601	n:10000
KS ci ratio: 6.178537e-02	ci left: 2.780479e-01	ci right 2.958764e-01	k: 2869	n:10000
MED18   10000 perm   1 sec   (7399 perm/sec)   p_kst 2.869000e-01   p_cons 4.601000e-01   p_joint 9.745000e-01

Outputting figure to mutsig2_images.part000000000104/MED18.2_635_10000_0.2869_0.4601_0.9745.png
                gene_name: MED18
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 71 percent done.
MED7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.051534e-02	ci left: 7.768156e-01	ci right 7.930181e-01	k: 7850	n:10000
KS ci ratio: 1.859697e-02	ci left: 8.085685e-01	ci right 8.238468e-01	k: 8163	n:10000
MED7   10000 perm   1 sec   (7118 perm/sec)   p_kst 8.163000e-01   p_cons 7.850000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000104/MED7.2_706_10000_0.8163_0.785_1.png
                gene_name: MED7
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 74 percent done.
MEIS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.218871e-02	ci left: 9.061740e-01	ci right 9.173848e-01	k: 9119	n:10000
Cons ci ratio: 2.215508e-02	ci left: 7.493800e-01	ci right 7.662695e-01	k: 7579	n:10000
KS ci ratio: 8.905489e-02	ci left: 1.550240e-01	ci right 1.695733e-01	k: 1622	n:10000
MEIS1   10000 perm   1 sec   (7060 perm/sec)   p_kst 1.622000e-01   p_cons 7.579000e-01   p_joint 9.119000e-01

Outputting figure to mutsig2_images.part000000000104/MEIS1.2_1221_10000_0.1622_0.7579_0.9119.png
                gene_name: MEIS1
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 76 percent done.
MEIS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.182134e-02	ci left: 9.111117e-01	ci right 9.220441e-01	k: 9167	n:10000
Cons ci ratio: 1.544229e-02	ci left: 8.588605e-01	ci right 8.723258e-01	k: 8657	n:10000
KS ci ratio: 1.769192e-02	ci left: 8.233055e-01	ci right 8.381013e-01	k: 8308	n:10000
MEIS2   10000 perm   2 sec   (6492 perm/sec)   p_kst 8.308000e-01   p_cons 8.657000e-01   p_joint 9.167000e-01

Outputting figure to mutsig2_images.part000000000104/MEIS2.2_1545_10000_0.8308_0.8657_0.9167.png
                gene_name: MEIS2
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 79 percent done.
MERTK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.898779e-03	ci left: 9.881795e-01	ci right 9.921271e-01	k: 9903	n:10000
Cons ci ratio: 3.358711e-02	ci left: 5.668447e-01	ci right 5.863106e-01	k: 5766	n:10000
KS ci ratio: 2.700042e-02	ci left: 6.689428e-01	ci right 6.873533e-01	k: 6782	n:10000
MERTK   10000 perm   2 sec   (5475 perm/sec)   p_kst 6.782000e-01   p_cons 5.766000e-01   p_joint 9.903000e-01

Outputting figure to mutsig2_images.part000000000104/MERTK.2_3076_10000_0.6782_0.5766_0.9903.png
                gene_name: MERTK
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 81 percent done.
METAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.787716e-02	ci left: 2.415369e-01	ci right 2.586089e-01	k: 2500	n:10000
KS ci ratio: 1.867750e-02	ci left: 8.072482e-01	ci right 8.225679e-01	k: 8150	n:10000
METAP1   10000 perm   1 sec   (6678 perm/sec)   p_kst 8.150000e-01   p_cons 2.500000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000104/METAP1.2_1205_10000_0.815_0.25_1.png
                gene_name: METAP1
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
METAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.983219e-02	ci left: 2.311621e-01	ci right 2.479899e-01	k: 2395	n:10000
Cons ci ratio: 6.019367e-02	ci left: 2.887481e-01	ci right 3.067699e-01	k: 2977	n:10000
KS ci ratio: 1.568265e-01	ci left: 5.417192e-02	ci right 6.348715e-02	k: 587	n:10000
METAP2   10000 perm   2 sec   (6444 perm/sec)   p_kst 5.870000e-02   p_cons 2.977000e-01   p_joint 2.395000e-01

Joint ci ratio: 4.834478e-02	ci left: 2.413823e-01	ci right 2.533912e-01	k: 4947	n:20000
Cons ci ratio: 4.255843e-02	ci left: 2.914671e-01	ci right 3.041917e-01	k: 5956	n:20000
KS ci ratio: 1.101019e-01	ci left: 5.630945e-02	ci right 6.291930e-02	k: 1191	n:20000
METAP2   20000 perm   4 sec   (5479 perm/sec)   p_kst 5.955000e-02   p_cons 2.978000e-01   p_joint 2.473500e-01

Joint ci ratio: 2.360541e-02	ci left: 4.732660e-01	ci right 4.846047e-01	k: 14368	n:30000
Cons ci ratio: 3.482516e-02	ci left: 2.917331e-01	ci right 3.021063e-01	k: 8907	n:30000
KS ci ratio: 9.024786e-02	ci left: 5.649034e-02	ci right 6.186209e-02	k: 1774	n:30000
METAP2   30000 perm   6 sec   (5151 perm/sec)   p_kst 5.913333e-02   p_cons 2.969000e-01   p_joint 4.789333e-01

Outputting figure to mutsig2_images.part000000000104/METAP2.2_1481_30000_0.059133_0.2969_0.47893.png
                gene_name: METAP2
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.059 
        ci_ks_bounds_left: 0.056 
       ci_ks_bounds_right: 0.062 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.48 

Current progress: 86 percent done.
METT11D1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.983906e-02	ci left: 3.725620e-01	ci right 3.917067e-01	k: 3821	n:10000
Cons ci ratio: 6.875699e-02	ci left: 2.367933e-01	ci right 2.537553e-01	k: 2452	n:10000
KS ci ratio: 1.736385e-02	ci left: 8.285951e-01	ci right 8.432086e-01	k: 8360	n:10000
METT11D1   10000 perm   2 sec   (6424 perm/sec)   p_kst 8.360000e-01   p_cons 2.452000e-01   p_joint 3.821000e-01

Outputting figure to mutsig2_images.part000000000104/METT11D1.2_1496_10000_0.836_0.2452_0.3821.png
                gene_name: METT11D1
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 88 percent done.
METTL6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.870345e-02	ci left: 4.964503e-01	ci right 5.161460e-01	k: 5063	n:10000
Cons ci ratio: 4.833233e-02	ci left: 3.870929e-01	ci right 4.063673e-01	k: 3967	n:10000
KS ci ratio: 7.164216e-02	ci left: 2.220775e-01	ci right 2.386798e-01	k: 2303	n:10000
METTL6   10000 perm   1 sec   (6890 perm/sec)   p_kst 2.303000e-01   p_cons 3.967000e-01   p_joint 5.063000e-01

Outputting figure to mutsig2_images.part000000000104/METTL6.2_875_10000_0.2303_0.3967_0.5063.png
                gene_name: METTL6
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 90 percent done.
METTL7B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.359145e-02	ci left: 7.253233e-01	ci right 7.427402e-01	k: 7341	n:10000
KS ci ratio: 1.579881e-02	ci left: 8.533504e-01	ci right 8.670391e-01	k: 8603	n:10000
METTL7B   10000 perm   1 sec   (7507 perm/sec)   p_kst 8.603000e-01   p_cons 7.341000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000104/METTL7B.2_743_10000_0.8603_0.7341_1.png
                gene_name: METTL7B
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
MEX3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.910801e-02	ci left: 4.912511e-01	ci right 5.109483e-01	k: 5011	n:10000
Cons ci ratio: 1.009590e-01	ci left: 1.243474e-01	ci right 1.376684e-01	k: 1309	n:10000
KS ci ratio: 7.217141e-02	ci left: 2.195112e-01	ci right 2.360477e-01	k: 2277	n:10000
MEX3A   10000 perm   2 sec   (6393 perm/sec)   p_kst 2.277000e-01   p_cons 1.309000e-01   p_joint 5.011000e-01

Joint ci ratio: 2.627407e-02	ci left: 5.197519e-01	ci right 5.336403e-01	k: 10534	n:20000
Cons ci ratio: 7.007247e-02	ci left: 1.305386e-01	ci right 1.400677e-01	k: 2705	n:20000
KS ci ratio: 5.096823e-02	ci left: 2.223986e-01	ci right 2.340805e-01	k: 4564	n:20000
MEX3A   20000 perm   4 sec   (5414 perm/sec)   p_kst 2.282000e-01   p_cons 1.352500e-01   p_joint 5.267000e-01

Outputting figure to mutsig2_images.part000000000104/MEX3A.2_1571_20000_0.2282_0.13525_0.5267.png
                gene_name: MEX3A
               theta_stop: 0.070 
                    nperm: 20000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.53 

Current progress: 95 percent done.
MEX3C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.195989e-01	ci left: 9.117000e-02	ci right 1.028660e-01	k: 969	n:10000
KS ci ratio: 5.639027e-02	ci left: 3.165168e-01	ci right 3.349849e-01	k: 3257	n:10000
MEX3C   10000 perm   2 sec   (6156 perm/sec)   p_kst 3.257000e-01   p_cons 9.690000e-02   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 8.324667e-02	ci left: 9.563031e-02	ci right 1.039865e-01	k: 1995	n:20000
KS ci ratio: 4.039245e-02	ci left: 3.136361e-01	ci right 3.266162e-01	k: 6402	n:20000
MEX3C   20000 perm   4 sec   (5275 perm/sec)   p_kst 3.201000e-01   p_cons 9.975000e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000104/MEX3C.2_1988_20000_0.3201_0.09975_1.png
                gene_name: MEX3C
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.100 
      ci_cons_bounds_left: 0.096 
     ci_cons_bounds_right: 0.10 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
MFAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.480595e-01	ci left: 6.063148e-02	ci right 7.042348e-02	k: 654	n:10000
Cons ci ratio: 6.223756e-03	ci left: 9.722779e-01	ci right 9.784409e-01	k: 9755	n:10000
KS ci ratio: 2.478600e-01	ci left: 2.137124e-02	ci right 2.751008e-02	k: 243	n:10000
MFAP1   10000 perm   1 sec   (6966 perm/sec)   p_kst 2.430000e-02   p_cons 9.755000e-01   p_joint 6.540000e-02

Joint ci ratio: 1.049967e-01	ci left: 6.171935e-02	ci right 6.860773e-02	k: 1302	n:20000
Cons ci ratio: 4.261841e-03	ci left: 9.747746e-01	ci right 9.789852e-01	k: 19539	n:20000
KS ci ratio: 1.771369e-01	ci left: 2.177980e-02	ci right 2.606015e-02	k: 477	n:20000
MFAP1   20000 perm   3 sec   (5845 perm/sec)   p_kst 2.385000e-02   p_cons 9.769500e-01   p_joint 6.510000e-02

Joint ci ratio: 8.684030e-02	ci left: 6.083153e-02	ci right 6.638669e-02	k: 1907	n:30000
Cons ci ratio: 3.469630e-03	ci left: 9.753092e-01	ci right 9.787309e-01	k: 29312	n:30000
KS ci ratio: 1.439147e-01	ci left: 2.239414e-02	ci right 2.589885e-02	k: 723	n:30000
MFAP1   30000 perm   6 sec   (5440 perm/sec)   p_kst 2.410000e-02   p_cons 9.770667e-01   p_joint 6.356667e-02

Joint ci ratio: 6.310669e-02	ci left: 8.519195e-02	ci right 9.076803e-02	k: 3518	n:40000
Cons ci ratio: 2.927504e-03	ci left: 9.767212e-01	ci right 9.796088e-01	k: 39128	n:40000
KS ci ratio: 1.259326e-01	ci left: 2.215878e-02	ci right 2.516092e-02	k: 945	n:40000
MFAP1   40000 perm   8 sec   (5210 perm/sec)   p_kst 2.362500e-02   p_cons 9.782000e-01   p_joint 8.795000e-02

Joint ci ratio: 5.649905e-02	ci left: 8.533339e-02	ci right 9.031459e-02	k: 4390	n:50000
Cons ci ratio: 2.620618e-03	ci left: 9.768408e-01	ci right 9.794233e-01	k: 48908	n:50000
KS ci ratio: 1.128089e-01	ci left: 2.224826e-02	ci right 2.492744e-02	k: 1178	n:50000
MFAP1   50000 perm   10 sec   (5043 perm/sec)   p_kst 2.356000e-02   p_cons 9.781600e-01   p_joint 8.780000e-02

Joint ci ratio: 5.157748e-02	ci left: 8.554718e-02	ci right 9.009278e-02	k: 5268	n:60000
Cons ci ratio: 2.414033e-03	ci left: 9.765552e-01	ci right 9.789316e-01	k: 58666	n:60000
KS ci ratio: 1.028982e-01	ci left: 2.240013e-02	ci right 2.484625e-02	k: 1416	n:60000
MFAP1   60000 perm   12 sec   (4902 perm/sec)   p_kst 2.360000e-02   p_cons 9.777667e-01   p_joint 8.780000e-02

Joint ci ratio: 4.765032e-02	ci left: 8.605264e-02	ci right 9.026729e-02	k: 6170	n:70000
Cons ci ratio: 2.241204e-03	ci left: 9.765205e-01	ci right 9.787254e-01	k: 68435	n:70000
KS ci ratio: 9.485965e-02	ci left: 2.268346e-02	ci right 2.495624e-02	k: 1666	n:70000
MFAP1   70000 perm   15 sec   (4773 perm/sec)   p_kst 2.380000e-02   p_cons 9.776429e-01   p_joint 8.814286e-02

Outputting figure to mutsig2_images.part000000000104/MFAP1.2_1356_70000_0.0238_0.97764_0.088143.png
                gene_name: MFAP1
               theta_stop: 0.095 
                    nperm: 70000 
                     p_ks: 0.024 
        ci_ks_bounds_left: 0.023 
       ci_ks_bounds_right: 0.025 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.088 
     ci_joint_bounds_left: 0.086 
    ci_joint_bounds_right: 0.090 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000104
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 104 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1723>
Subject: Job 8004266: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1723>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000105> was used as the working directory.
Started at Sun Nov 11 15:08:12 2012
Results reported at Sun Nov 11 15:14:49 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000105.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000105.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 105  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000105.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    406.34 sec.
    Max Memory :      4659 MB
    Max Swap   :      7102 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
105
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 105
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 105: processing genes 9410 - 9499
Calculating significance of each gene.
Using projection method.
9410	MFHAS1	7.239999e-01
9411	MFI2	5.959425e-01
9412	MFN1	1
9413	MFN2	1
9414	MFNG	5.982423e-01
9415	MFRP	4.967735e-01
9416	MFSD1	2.050505e-01
9417	MFSD10	1
9418	MFSD11	6.432641e-01
9419	MFSD2A	5.516649e-01
9420	MFSD2B	4.970273e-01
9421	MFSD3	5.380630e-01
9422	MFSD4	1
9423	MFSD5	6.862621e-01
9424	MFSD6	7.612822e-01
9425	MFSD6L	7.903580e-01
9426	MFSD7	6.759960e-01
9427	MFSD8	3.411758e-01
9428	MFSD9	3.373159e-01
9429	MGA	9.910944e-01
9430	MGAM	9.991273e-01
9431	MGAT1	4.801033e-01
9432	MGAT2	4.641322e-01
9433	MGAT3	7.756105e-01
9434	MGAT4A	6.820580e-01
9435	MGAT4B	8.821079e-01
9436	MGAT4C	7.711707e-02
9437	MGAT5	4.579858e-01
9438	MGAT5B	1
9439	MGC26647	6.239428e-04
9440	MGC29506	1
9441	MGC42105	1
9442	MGC70857	1
9443	MGC87042	1
9444	MGEA5	7.991020e-01
9445	MGLL	5.090265e-01
9446	MGMT	6.391390e-01
9447	MGP	1
9448	MGRN1	1
9449	MGST1	1.359524e-01
9450	MGST2	1
9451	MGST3	1
9452	MIA	3.827102e-01
9453	MIA2	5.220550e-01
9454	MIA3	9.995598e-01
9455	MIB1	8.940411e-01
9456	MIB2	1
9457	MICA	1
9458	MICAL1	9.424641e-01
9459	MICAL2	9.420206e-01
9460	MICAL3	9.976474e-01
9461	MICALCL	9.004623e-01
9462	MICALL1	8.056139e-01
9463	MICALL2	3.594725e-01
9464	MICB	1
9465	MID1	6.826270e-01
9466	MID1IP1	1
9467	MID2	8.167129e-01
9468	MIDN	2.677225e-01
9469	MIER1	1
9470	MIER2	5.409430e-01
9471	MIER3	4.715702e-01
9472	MIF	1
9473	MIF4GD	1
9474	MIIP	5.280173e-01
9475	MINA	7.355417e-01
9476	MINK1	9.378081e-01
9477	MINPP1	1
9478	MIOS	1
9479	MIOX	6.115776e-01
9480	MIP	1.052415e-01
9481	MIPEP	7.191798e-01
9482	MIPOL1	2.005250e-01
9483	MIS12	1
9484	MITD1	2.537796e-01
9485	MITF	1
9486	MIXL1	1
9487	MKI67	8.247834e-01
9488	MKI67IP	5.709392e-01
9489	MKKS	7.566037e-01
9490	MKL1	6.001375e-01
9491	MKL2	1
9492	MKLN1	3.921191e-01
9493	MKNK1	1
9494	MKNK2	4.821631e-01
9495	MKRN1	7.254918e-02
9496	MKRN2	8.650877e-01
9497	MKRN3	5.015164e-01
9498	MKS1	1
9499	MKX	2.961145e-01
Done

Running MutSig 2:
Scatter job 105: processing genes 9410 - 9499
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
MKI67
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.051746e-02	ci left: 1.838286e-01	ci right 1.993515e-01	k: 1915	n:10000
Cons ci ratio: 1.917816e-01	ci left: 3.624378e-02	ci right 4.402702e-02	k: 400	n:10000
KS ci ratio: 1.932481e-02	ci left: 7.965889e-01	ci right 8.122334e-01	k: 8045	n:10000
MKI67   10000 perm   3 sec   (3704 perm/sec)   p_kst 8.045000e-01   p_cons 4.000000e-02   p_joint 1.915000e-01

Joint ci ratio: 5.827455e-02	ci left: 1.790959e-01	ci right 1.898960e-01	k: 3689	n:20000
Cons ci ratio: 1.249523e-01	ci left: 4.396240e-02	ci right 4.987023e-02	k: 937	n:20000
KS ci ratio: 1.377506e-02	ci left: 7.963580e-01	ci right 8.074541e-01	k: 16039	n:20000
MKI67   20000 perm   7 sec   (2682 perm/sec)   p_kst 8.019500e-01   p_cons 4.685000e-02   p_joint 1.844500e-01

Joint ci ratio: 5.100483e-02	ci left: 1.602879e-01	ci right 1.687105e-01	k: 4934	n:30000
Cons ci ratio: 1.071591e-01	ci left: 4.040740e-02	ci right 4.501502e-02	k: 1280	n:30000
KS ci ratio: 1.120885e-02	ci left: 7.984870e-01	ci right 8.075209e-01	k: 24091	n:30000
MKI67   30000 perm   10 sec   (2858 perm/sec)   p_kst 8.030333e-01   p_cons 4.266667e-02   p_joint 1.644667e-01

Joint ci ratio: 4.075023e-02	ci left: 1.840325e-01	ci right 1.917128e-01	k: 7514	n:40000
Cons ci ratio: 8.786528e-02	ci left: 4.531355e-02	ci right 4.950247e-02	k: 1895	n:40000
KS ci ratio: 9.773290e-03	ci left: 7.969272e-01	ci right 8.047790e-01	k: 32035	n:40000
MKI67   40000 perm   14 sec   (2939 perm/sec)   p_kst 8.008750e-01   p_cons 4.737500e-02   p_joint 1.878500e-01

Outputting figure to mutsig2_images.part000000000105/MKI67.11_9827_40000_0.80088_0.047375_0.18785.png
                gene_name: MKI67
               theta_stop: 0.088 
                    nperm: 40000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.047 
      ci_cons_bounds_left: 0.045 
     ci_cons_bounds_right: 0.050 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 2 percent done.
MGA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.061291e-01	ci left: 3.129396e-02	ci right 3.858023e-02	k: 348	n:10000
Cons ci ratio: 2.560455e-01	ci left: 1.996408e-02	ci right 2.591832e-02	k: 228	n:10000
KS ci ratio: 5.812920e-02	ci left: 3.034210e-01	ci right 3.216883e-01	k: 3125	n:10000
MGA   10000 perm   2 sec   (4078 perm/sec)   p_kst 3.125000e-01   p_cons 2.280000e-02   p_joint 3.480000e-02

Joint ci ratio: 1.501612e-01	ci left: 3.047099e-02	ci right 3.546599e-02	k: 658	n:20000
Cons ci ratio: 1.736334e-01	ci left: 2.268901e-02	ci right 2.705062e-02	k: 496	n:20000
KS ci ratio: 4.097965e-02	ci left: 3.074211e-01	ci right 3.203331e-01	k: 6277	n:20000
MGA   20000 perm   5 sec   (3819 perm/sec)   p_kst 3.138500e-01   p_cons 2.480000e-02   p_joint 3.290000e-02

Joint ci ratio: 1.126445e-01	ci left: 3.661037e-02	ci right 4.101285e-02	k: 1163	n:30000
Cons ci ratio: 1.458884e-01	ci left: 2.178327e-02	ci right 2.524319e-02	k: 704	n:30000
KS ci ratio: 3.347790e-02	ci left: 3.083847e-01	ci right 3.189181e-01	k: 9409	n:30000
MGA   30000 perm   8 sec   (3727 perm/sec)   p_kst 3.136333e-01   p_cons 2.346667e-02   p_joint 3.876667e-02

Joint ci ratio: 9.978172e-02	ci left: 3.529333e-02	ci right 3.902425e-02	k: 1485	n:40000
Cons ci ratio: 1.273179e-01	ci left: 2.167428e-02	ci right 2.464550e-02	k: 925	n:40000
KS ci ratio: 2.911889e-02	ci left: 3.072368e-01	ci right 3.163405e-01	k: 12471	n:40000
MGA   40000 perm   11 sec   (3662 perm/sec)   p_kst 3.117750e-01   p_cons 2.312500e-02   p_joint 3.712500e-02

Joint ci ratio: 8.825321e-02	ci left: 3.628226e-02	ci right 3.965165e-02	k: 1897	n:50000
Cons ci ratio: 1.137010e-01	ci left: 2.189823e-02	ci right 2.455752e-02	k: 1160	n:50000
KS ci ratio: 2.599022e-02	ci left: 3.086175e-01	ci right 3.167642e-01	k: 15634	n:50000
MGA   50000 perm   14 sec   (3605 perm/sec)   p_kst 3.126800e-01   p_cons 2.320000e-02   p_joint 3.794000e-02

Joint ci ratio: 7.478782e-02	ci left: 4.214352e-02	ci right 4.543413e-02	k: 2626	n:60000
Cons ci ratio: 1.121178e-01	ci left: 1.884609e-02	ci right 2.110068e-02	k: 1197	n:60000
KS ci ratio: 2.372572e-02	ci left: 3.089747e-01	ci right 3.164101e-01	k: 18761	n:60000
MGA   60000 perm   17 sec   (3553 perm/sec)   p_kst 3.126833e-01   p_cons 1.995000e-02   p_joint 4.376667e-02

Joint ci ratio: 7.466375e-02	ci left: 3.646940e-02	ci right 3.931193e-02	k: 2651	n:70000
Cons ci ratio: 1.031875e-01	ci left: 1.915667e-02	ci right 2.125479e-02	k: 1413	n:70000
KS ci ratio: 2.201329e-02	ci left: 3.083264e-01	ci right 3.152035e-01	k: 21823	n:70000
MGA   70000 perm   20 sec   (3506 perm/sec)   p_kst 3.117571e-01   p_cons 2.018571e-02   p_joint 3.787143e-02

Joint ci ratio: 6.321429e-02	ci left: 4.441086e-02	ci right 4.732218e-02	k: 3668	n:80000
Cons ci ratio: 9.698355e-02	ci left: 1.904105e-02	ci right 2.099397e-02	k: 1600	n:80000
KS ci ratio: 2.070650e-02	ci left: 3.061726e-01	ci right 3.125912e-01	k: 24750	n:80000
MGA   80000 perm   23 sec   (3462 perm/sec)   p_kst 3.093750e-01   p_cons 2.000000e-02   p_joint 4.585000e-02

Outputting figure to mutsig2_images.part000000000105/MGA.9_9290_80000_0.30938_0.02_0.04585.png
                gene_name: MGA
               theta_stop: 0.097 
                    nperm: 80000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.020 
      ci_cons_bounds_left: 0.019 
     ci_cons_bounds_right: 0.021 
                  p_joint: 0.046 
     ci_joint_bounds_left: 0.044 
    ci_joint_bounds_right: 0.047 

Current progress: 4 percent done.
MIA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.245171e-02	ci left: 5.835963e-01	ci right 6.029494e-01	k: 5933	n:10000
Cons ci ratio: 7.774266e-02	ci left: 1.947597e-01	ci right 2.106139e-01	k: 2026	n:10000
KS ci ratio: 2.570378e-02	ci left: 6.902052e-01	ci right 7.082786e-01	k: 6993	n:10000
MIA3   10000 perm   2 sec   (4865 perm/sec)   p_kst 6.993000e-01   p_cons 2.026000e-01   p_joint 5.933000e-01

Outputting figure to mutsig2_images.part000000000105/MIA3.9_5836_10000_0.6993_0.2026_0.5933.png
                gene_name: MIA3
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 6 percent done.
MKRN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.383106e-02	ci left: 2.117161e-01	ci right 2.280474e-01	k: 2198	n:10000
Cons ci ratio: 1.376601e-01	ci left: 6.981515e-02	ci right 8.023404e-02	k: 749	n:10000
KS ci ratio: 5.183877e-02	ci left: 3.542622e-01	ci right 3.732173e-01	k: 3637	n:10000
MKRN3   10000 perm   2 sec   (6522 perm/sec)   p_kst 3.637000e-01   p_cons 7.490000e-02   p_joint 2.198000e-01

Joint ci ratio: 5.806241e-02	ci left: 1.801834e-01	ci right 1.910082e-01	k: 3711	n:20000
Cons ci ratio: 9.812251e-02	ci left: 7.026263e-02	ci right 7.756183e-02	k: 1477	n:20000
KS ci ratio: 3.658426e-02	ci left: 3.579743e-01	ci right 3.713651e-01	k: 7293	n:20000
MKRN3   20000 perm   3 sec   (5782 perm/sec)   p_kst 3.646500e-01   p_cons 7.385000e-02   p_joint 1.855500e-01

Outputting figure to mutsig2_images.part000000000105/MKRN3.8_1528_20000_0.36465_0.07385_0.18555.png
                gene_name: MKRN3
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.074 
      ci_cons_bounds_left: 0.070 
     ci_cons_bounds_right: 0.078 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 8 percent done.
MGC26647
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.151877e-02	ci left: 5.976484e-01	ci right 6.168891e-01	k: 6073	n:10000
Cons ci ratio: 4.123801e-02	ci left: 4.647714e-01	ci right 4.844434e-01	k: 4746	n:10000
KS ci ratio: 5.097653e-02	ci left: 3.620179e-01	ci right 3.810570e-01	k: 3715	n:10000
MGC26647   10000 perm   1 sec   (7105 perm/sec)   p_kst 3.715000e-01   p_cons 4.746000e-01   p_joint 6.073000e-01

Outputting figure to mutsig2_images.part000000000105/MGC26647.6_766_10000_0.3715_0.4746_0.6073.png
                gene_name: MGC26647
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 10 percent done.
MKL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.046495e-02	ci left: 6.138185e-01	ci right 6.329096e-01	k: 6234	n:10000
Cons ci ratio: 7.275060e-02	ci left: 2.167479e-01	ci right 2.332127e-01	k: 2249	n:10000
KS ci ratio: 2.277655e-02	ci left: 7.389648e-01	ci right 7.560908e-01	k: 7476	n:10000
MKL1   10000 perm   2 sec   (6441 perm/sec)   p_kst 7.476000e-01   p_cons 2.249000e-01   p_joint 6.234000e-01

Outputting figure to mutsig2_images.part000000000105/MKL1.6_2844_10000_0.7476_0.2249_0.6234.png
                gene_name: MKL1
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 12 percent done.
MGAM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.961964e-02	ci left: 4.847535e-01	ci right 5.044496e-01	k: 4946	n:10000
Cons ci ratio: 3.536014e-02	ci left: 5.414881e-01	ci right 5.610820e-01	k: 5513	n:10000
KS ci ratio: 4.885111e-02	ci left: 3.820160e-01	ci right 4.012472e-01	k: 3916	n:10000
MGAM   10000 perm   2 sec   (4873 perm/sec)   p_kst 3.916000e-01   p_cons 5.513000e-01   p_joint 4.946000e-01

Outputting figure to mutsig2_images.part000000000105/MGAM.5_5762_10000_0.3916_0.5513_0.4946.png
                gene_name: MGAM
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 14 percent done.
MGAT5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.367889e-02	ci left: 8.852399e-01	ci right 8.975311e-01	k: 8915	n:10000
Cons ci ratio: 3.147254e-02	ci left: 5.983512e-01	ci right 6.175859e-01	k: 6080	n:10000
KS ci ratio: 1.954562e-02	ci left: 7.929363e-01	ci right 8.086881e-01	k: 8009	n:10000
MGAT5   10000 perm   2 sec   (6596 perm/sec)   p_kst 8.009000e-01   p_cons 6.080000e-01   p_joint 8.915000e-01

Outputting figure to mutsig2_images.part000000000105/MGAT5.5_2290_10000_0.8009_0.608_0.8915.png
                gene_name: MGAT5
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 16 percent done.
MGAT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.695388e-02	ci left: 5.195598e-01	ci right 5.392231e-01	k: 5294	n:10000
Cons ci ratio: 4.230306e-02	ci left: 4.520910e-01	ci right 4.717312e-01	k: 4619	n:10000
KS ci ratio: 6.064282e-02	ci left: 2.856761e-01	ci right 3.036436e-01	k: 2946	n:10000
MGAT3   10000 perm   1 sec   (7063 perm/sec)   p_kst 2.946000e-01   p_cons 4.619000e-01   p_joint 5.294000e-01

Outputting figure to mutsig2_images.part000000000105/MGAT3.4_1606_10000_0.2946_0.4619_0.5294.png
                gene_name: MGAT3
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 18 percent done.
MGAT4C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.508155e-02	ci left: 3.268405e-01	ci right 3.454551e-01	k: 3361	n:10000
Cons ci ratio: 3.384917e-02	ci left: 5.630346e-01	ci right 5.825230e-01	k: 5728	n:10000
KS ci ratio: 9.663204e-02	ci left: 1.344301e-01	ci right 1.481796e-01	k: 1412	n:10000
MGAT4C   10000 perm   1 sec   (6669 perm/sec)   p_kst 1.412000e-01   p_cons 5.728000e-01   p_joint 3.361000e-01

Outputting figure to mutsig2_images.part000000000105/MGAT4C.4_1449_10000_0.1412_0.5728_0.3361.png
                gene_name: MGAT4C
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 20 percent done.
MGAT5B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.241139e-02	ci left: 5.841983e-01	ci right 6.035469e-01	k: 5939	n:10000
Cons ci ratio: 3.073802e-02	ci left: 6.095991e-01	ci right 6.287314e-01	k: 6192	n:10000
KS ci ratio: 4.640851e-02	ci left: 4.066140e-01	ci right 4.260348e-01	k: 4163	n:10000
MGAT5B   10000 perm   2 sec   (6441 perm/sec)   p_kst 4.163000e-01   p_cons 6.192000e-01   p_joint 5.939000e-01

Outputting figure to mutsig2_images.part000000000105/MGAT5B.4_2542_10000_0.4163_0.6192_0.5939.png
                gene_name: MGAT5B
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 22 percent done.
MICALL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.050932e-02	ci left: 4.736615e-01	ci right 4.933481e-01	k: 4835	n:10000
Cons ci ratio: 7.158161e-02	ci left: 2.223737e-01	ci right 2.389835e-01	k: 2306	n:10000
KS ci ratio: 2.503941e-02	ci left: 7.011979e-01	ci right 7.190795e-01	k: 7102	n:10000
MICALL2   10000 perm   2 sec   (6015 perm/sec)   p_kst 7.102000e-01   p_cons 2.306000e-01   p_joint 4.835000e-01

Outputting figure to mutsig2_images.part000000000105/MICALL2.4_2783_10000_0.7102_0.2306_0.4835.png
                gene_name: MICALL2
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 24 percent done.
MKRN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.589065e-02	ci left: 8.519224e-01	ci right 8.656679e-01	k: 8589	n:10000
Cons ci ratio: 3.460899e-02	ci left: 5.521087e-01	ci right 5.716552e-01	k: 5619	n:10000
KS ci ratio: 2.920630e-02	ci left: 6.335189e-01	ci right 6.523977e-01	k: 6430	n:10000
MKRN1   10000 perm   1 sec   (7047 perm/sec)   p_kst 6.430000e-01   p_cons 5.619000e-01   p_joint 8.589000e-01

Outputting figure to mutsig2_images.part000000000105/MKRN1.4_1485_10000_0.643_0.5619_0.8589.png
                gene_name: MKRN1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 26 percent done.
MFHAS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.685557e-02	ci left: 3.129444e-01	ci right 3.313594e-01	k: 3221	n:10000
Cons ci ratio: 1.362898e-01	ci left: 7.117069e-02	ci right 8.167765e-02	k: 763	n:10000
KS ci ratio: 1.119136e-02	ci left: 9.193534e-01	ci right 9.297976e-01	k: 9247	n:10000
MFHAS1   10000 perm   2 sec   (6237 perm/sec)   p_kst 9.247000e-01   p_cons 7.630000e-02   p_joint 3.221000e-01

Joint ci ratio: 4.115152e-02	ci left: 3.056314e-01	ci right 3.185233e-01	k: 6241	n:20000
Cons ci ratio: 9.490190e-02	ci left: 7.485789e-02	ci right 8.236516e-02	k: 1571	n:20000
KS ci ratio: 8.100312e-03	ci left: 9.175327e-01	ci right 9.250443e-01	k: 18427	n:20000
MFHAS1   20000 perm   4 sec   (5526 perm/sec)   p_kst 9.213500e-01   p_cons 7.855000e-02   p_joint 3.120500e-01

Outputting figure to mutsig2_images.part000000000105/MFHAS1.3_3171_20000_0.92135_0.07855_0.31205.png
                gene_name: MFHAS1
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.079 
      ci_cons_bounds_left: 0.075 
     ci_cons_bounds_right: 0.082 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 28 percent done.
MFI2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.786775e-02	ci left: 8.204583e-01	ci right 8.353502e-01	k: 8280	n:10000
Cons ci ratio: 1.046834e-02	ci left: 9.284392e-01	ci right 9.383065e-01	k: 9335	n:10000
KS ci ratio: 4.118018e-02	ci left: 4.654705e-01	ci right 4.851439e-01	k: 4753	n:10000
MFI2   10000 perm   2 sec   (6604 perm/sec)   p_kst 4.753000e-01   p_cons 9.335000e-01   p_joint 8.280000e-01

Outputting figure to mutsig2_images.part000000000105/MFI2.3_2482_10000_0.4753_0.9335_0.828.png
                gene_name: MFI2
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 30 percent done.
MFRP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.771862e-02	ci left: 1.948582e-01	ci right 2.107153e-01	k: 2027	n:10000
Cons ci ratio: 1.742710e-02	ci left: 8.275777e-01	ci right 8.422267e-01	k: 8350	n:10000
KS ci ratio: 1.613966e-01	ci left: 5.118874e-02	ci right 6.027224e-02	k: 556	n:10000
MFRP   10000 perm   1 sec   (6788 perm/sec)   p_kst 5.560000e-02   p_cons 8.350000e-01   p_joint 2.027000e-01

Joint ci ratio: 6.046574e-02	ci left: 1.683734e-01	ci right 1.789217e-01	k: 3472	n:20000
Cons ci ratio: 1.198081e-02	ci left: 8.374781e-01	ci right 8.476221e-01	k: 16852	n:20000
KS ci ratio: 1.162988e-01	ci left: 5.061589e-02	ci right 5.691464e-02	k: 1074	n:20000
MFRP   20000 perm   3 sec   (5974 perm/sec)   p_kst 5.370000e-02   p_cons 8.426000e-01   p_joint 1.736000e-01

Joint ci ratio: 5.840986e-02	ci left: 1.267075e-01	ci right 1.343642e-01	k: 3915	n:30000
Cons ci ratio: 1.032506e-02	ci left: 8.234120e-01	ci right 8.319911e-01	k: 24832	n:30000
KS ci ratio: 9.576109e-02	ci left: 5.036128e-02	ci right 5.545908e-02	k: 1586	n:30000
MFRP   30000 perm   5 sec   (5663 perm/sec)   p_kst 5.286667e-02   p_cons 8.277333e-01   p_joint 1.305000e-01

Outputting figure to mutsig2_images.part000000000105/MFRP.3_1792_30000_0.052867_0.82773_0.1305.png
                gene_name: MFRP
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.053 
        ci_ks_bounds_left: 0.050 
       ci_ks_bounds_right: 0.055 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 32 percent done.
MFSD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.284443e-02	ci left: 8.971340e-01	ci right 9.088300e-01	k: 9031	n:10000
Cons ci ratio: 3.331963e-02	ci left: 5.707557e-01	ci right 5.901974e-01	k: 5805	n:10000
KS ci ratio: 1.861556e-02	ci left: 8.082638e-01	ci right 8.235517e-01	k: 8160	n:10000
MFSD1   10000 perm   1 sec   (6815 perm/sec)   p_kst 8.160000e-01   p_cons 5.805000e-01   p_joint 9.031000e-01

Outputting figure to mutsig2_images.part000000000105/MFSD1.3_1609_10000_0.816_0.5805_0.9031.png
                gene_name: MFSD1
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 34 percent done.
MFSD8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.074776e-01	ci left: 1.110554e-01	ci right 1.237684e-01	k: 1173	n:10000
Cons ci ratio: 2.386945e-02	ci left: 7.206775e-01	ci right 7.381887e-01	k: 7295	n:10000
KS ci ratio: 1.629514e-01	ci left: 5.022725e-02	ci right 5.923435e-02	k: 546	n:10000
MFSD8   10000 perm   1 sec   (6838 perm/sec)   p_kst 5.460000e-02   p_cons 7.295000e-01   p_joint 1.173000e-01

Joint ci ratio: 8.597664e-02	ci left: 9.008782e-02	ci right 9.823061e-02	k: 1882	n:20000
Cons ci ratio: 1.701756e-02	ci left: 7.200129e-01	ci right 7.324213e-01	k: 14525	n:20000
KS ci ratio: 1.200634e-01	ci left: 4.755432e-02	ci right 5.367717e-02	k: 1011	n:20000
MFSD8   20000 perm   3 sec   (6066 perm/sec)   p_kst 5.055000e-02   p_cons 7.262500e-01   p_joint 9.410000e-02

Joint ci ratio: 7.822813e-02	ci left: 7.420408e-02	ci right 8.027809e-02	k: 2316	n:30000
Cons ci ratio: 1.386283e-02	ci left: 7.220879e-01	ci right 7.322014e-01	k: 21815	n:30000
KS ci ratio: 9.851152e-02	ci left: 4.765843e-02	ci right 5.262915e-02	k: 1503	n:30000
MFSD8   30000 perm   5 sec   (5775 perm/sec)   p_kst 5.010000e-02   p_cons 7.271667e-01   p_joint 7.720000e-02

Outputting figure to mutsig2_images.part000000000105/MFSD8.3_1605_30000_0.0501_0.72717_0.0772.png
                gene_name: MFSD8
               theta_stop: 0.099 
                    nperm: 30000 
                     p_ks: 0.050 
        ci_ks_bounds_left: 0.048 
       ci_ks_bounds_right: 0.053 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.077 
     ci_joint_bounds_left: 0.074 
    ci_joint_bounds_right: 0.080 

Current progress: 36 percent done.
MFSD9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.878267e-02	ci left: 8.055218e-01	ci right 8.208953e-01	k: 8133	n:10000
Cons ci ratio: 4.840307e-02	ci left: 3.863960e-01	ci right 4.056646e-01	k: 3960	n:10000
KS ci ratio: 1.060242e-02	ci left: 9.267855e-01	ci right 9.367612e-01	k: 9319	n:10000
MFSD9   10000 perm   1 sec   (7108 perm/sec)   p_kst 9.319000e-01   p_cons 3.960000e-01   p_joint 8.133000e-01

Outputting figure to mutsig2_images.part000000000105/MFSD9.3_1449_10000_0.9319_0.396_0.8133.png
                gene_name: MFSD9
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 38 percent done.
MIA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.961818e-02	ci left: 3.746515e-01	ci right 3.938160e-01	k: 3842	n:10000
Cons ci ratio: 8.531708e-02	ci left: 1.668119e-01	ci right 1.817783e-01	k: 1742	n:10000
KS ci ratio: 3.635020e-02	ci left: 5.277682e-01	ci right 5.474099e-01	k: 5376	n:10000
MIA2   10000 perm   1 sec   (6811 perm/sec)   p_kst 5.376000e-01   p_cons 1.742000e-01   p_joint 3.842000e-01

Outputting figure to mutsig2_images.part000000000105/MIA2.3_1989_10000_0.5376_0.1742_0.3842.png
                gene_name: MIA2
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 40 percent done.
MICAL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.055584e-02	ci left: 6.124120e-01	ci right 6.315169e-01	k: 6220	n:10000
KS ci ratio: 2.616904e-02	ci left: 6.825442e-01	ci right 7.007441e-01	k: 6917	n:10000
MICAL3   10000 perm   2 sec   (4985 perm/sec)   p_kst 6.917000e-01   p_cons 6.220000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000105/MICAL3.3_6870_10000_0.6917_0.622_1.png
                gene_name: MICAL3
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 42 percent done.
MIDN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.093456e-02	ci left: 1.495278e-01	ci right 1.638728e-01	k: 1566	n:10000
Cons ci ratio: 1.486677e-01	ci left: 6.014890e-02	ci right 6.990637e-02	k: 649	n:10000
KS ci ratio: 2.866147e-02	ci left: 6.421684e-01	ci right 6.609432e-01	k: 6516	n:10000
MIDN   10000 perm   1 sec   (7087 perm/sec)   p_kst 6.516000e-01   p_cons 6.490000e-02   p_joint 1.566000e-01

Joint ci ratio: 4.201036e-02	ci left: 2.968835e-01	ci right 3.096737e-01	k: 6065	n:20000
Cons ci ratio: 1.050830e-01	ci left: 6.162181e-02	ci right 6.850530e-02	k: 1300	n:20000
KS ci ratio: 2.015833e-02	ci left: 6.474106e-01	ci right 6.606446e-01	k: 13081	n:20000
MIDN   20000 perm   3 sec   (6257 perm/sec)   p_kst 6.540500e-01   p_cons 6.500000e-02   p_joint 3.032500e-01

Joint ci ratio: 3.668910e-02	ci left: 2.705491e-01	ci right 2.806943e-01	k: 8268	n:30000
Cons ci ratio: 8.602466e-02	ci left: 6.194193e-02	ci right 6.754272e-02	k: 1941	n:30000
KS ci ratio: 1.647095e-02	ci left: 6.483181e-01	ci right 6.591188e-01	k: 19612	n:30000
MIDN   30000 perm   5 sec   (5943 perm/sec)   p_kst 6.537333e-01   p_cons 6.470000e-02   p_joint 2.756000e-01

Outputting figure to mutsig2_images.part000000000105/MIDN.3_1435_30000_0.65373_0.0647_0.2756.png
                gene_name: MIDN
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.065 
      ci_cons_bounds_left: 0.062 
     ci_cons_bounds_right: 0.068 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 44 percent done.
MIOS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.687064e-02	ci left: 6.710580e-01	ci right 6.894369e-01	k: 6803	n:10000
Cons ci ratio: 2.161163e-02	ci left: 7.584861e-01	ci right 7.751582e-01	k: 7669	n:10000
KS ci ratio: 4.319010e-02	ci left: 4.418115e-01	ci right 4.614167e-01	k: 4516	n:10000
MIOS   10000 perm   2 sec   (6523 perm/sec)   p_kst 4.516000e-01   p_cons 7.669000e-01   p_joint 6.803000e-01

Outputting figure to mutsig2_images.part000000000105/MIOS.3_2668_10000_0.4516_0.7669_0.6803.png
                gene_name: MIOS
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 46 percent done.
MIP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.833270e-02	ci left: 3.019334e-01	ci right 3.201768e-01	k: 3110	n:10000
Cons ci ratio: 2.968502e-02	ci left: 6.259785e-01	ci right 6.449425e-01	k: 6355	n:10000
KS ci ratio: 6.755301e-02	ci left: 2.433161e-01	ci right 2.604287e-01	k: 2518	n:10000
MIP   10000 perm   1 sec   (7338 perm/sec)   p_kst 2.518000e-01   p_cons 6.355000e-01   p_joint 3.110000e-01

Outputting figure to mutsig2_images.part000000000105/MIP.3_808_10000_0.2518_0.6355_0.311.png
                gene_name: MIP
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 48 percent done.
MIPOL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.798077e-02	ci left: 3.045120e-01	ci right 3.227967e-01	k: 3136	n:10000
Cons ci ratio: 1.183862e-01	ci left: 9.292171e-02	ci right 1.047132e-01	k: 987	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
MIPOL1   10000 perm   2 sec   (6567 perm/sec)   p_kst 1   p_cons 9.870000e-02   p_joint 3.136000e-01

Joint ci ratio: 4.128125e-02	ci left: 3.042892e-01	ci right 3.171659e-01	k: 6214	n:20000
Cons ci ratio: 8.469174e-02	ci left: 9.263781e-02	ci right 1.008798e-01	k: 1934	n:20000
KS ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
MIPOL1   20000 perm   3 sec   (5996 perm/sec)   p_kst 1   p_cons 9.670000e-02   p_joint 3.107000e-01

Outputting figure to mutsig2_images.part000000000105/MIPOL1.3_1373_20000_1_0.0967_0.3107.png
                gene_name: MIPOL1
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.097 
      ci_cons_bounds_left: 0.093 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 50 percent done.
MKLN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.221246e-02	ci left: 2.193138e-01	ci right 2.358452e-01	k: 2275	n:10000
Cons ci ratio: 4.657119e-02	ci left: 4.049202e-01	ci right 4.243295e-01	k: 4146	n:10000
KS ci ratio: 9.141929e-02	ci left: 1.481542e-01	ci right 1.624472e-01	k: 1552	n:10000
MKLN1   10000 perm   2 sec   (6555 perm/sec)   p_kst 1.552000e-01   p_cons 4.146000e-01   p_joint 2.275000e-01

Outputting figure to mutsig2_images.part000000000105/MKLN1.3_2313_10000_0.1552_0.4146_0.2275.png
                gene_name: MKLN1
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 52 percent done.
MFN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.288515e-02	ci left: 7.371453e-01	ci right 7.543113e-01	k: 7458	n:10000
Cons ci ratio: 1.041386e-01	ci left: 1.176005e-01	ci right 1.306194e-01	k: 1240	n:10000
KS ci ratio: 5.238060e-02	ci left: 3.494907e-01	ci right 3.683915e-01	k: 3589	n:10000
MFN1   10000 perm   1 sec   (6828 perm/sec)   p_kst 3.589000e-01   p_cons 1.240000e-01   p_joint 7.458000e-01

Joint ci ratio: 1.654737e-02	ci left: 7.310911e-01	ci right 7.433399e-01	k: 14745	n:20000
Cons ci ratio: 7.416821e-02	ci left: 1.179862e-01	ci right 1.271238e-01	k: 2450	n:20000
KS ci ratio: 3.706272e-02	ci left: 3.519991e-01	ci right 3.653420e-01	k: 7173	n:20000
MFN1   20000 perm   3 sec   (6041 perm/sec)   p_kst 3.586500e-01   p_cons 1.225000e-01   p_joint 7.372500e-01

Outputting figure to mutsig2_images.part000000000105/MFN1.2_2294_20000_0.35865_0.1225_0.73725.png
                gene_name: MFN1
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.74 

Current progress: 54 percent done.
MFSD2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.707253e-02	ci left: 2.459853e-01	ci right 2.631579e-01	k: 2545	n:10000
KS ci ratio: 1.031596e-02	ci left: 9.303005e-01	ci right 9.400441e-01	k: 9353	n:10000
MFSD2A   10000 perm   1 sec   (7357 perm/sec)   p_kst 9.353000e-01   p_cons 2.545000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000105/MFSD2A.2_1688_10000_0.9353_0.2545_1.png
                gene_name: MFSD2A
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 56 percent done.
MFSD2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.533675e-02	ci left: 4.179754e-01	ci right 4.374667e-01	k: 4277	n:10000
Cons ci ratio: 5.167123e-02	ci left: 3.557534e-01	ci right 3.747251e-01	k: 3652	n:10000
KS ci ratio: 3.403624e-02	ci left: 5.603277e-01	ci right 5.798314e-01	k: 5701	n:10000
MFSD2B   10000 perm   1 sec   (7205 perm/sec)   p_kst 5.701000e-01   p_cons 3.652000e-01   p_joint 4.277000e-01

Outputting figure to mutsig2_images.part000000000105/MFSD2B.2_1544_10000_0.5701_0.3652_0.4277.png
                gene_name: MFSD2B
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 58 percent done.
MFSD6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.659180e-02	ci left: 8.409140e-01	ci right 8.550827e-01	k: 8481	n:10000
Cons ci ratio: 2.899040e-02	ci left: 6.369381e-01	ci right 6.557766e-01	k: 6464	n:10000
KS ci ratio: 2.761474e-02	ci left: 6.589740e-01	ci right 6.775279e-01	k: 6683	n:10000
MFSD6   10000 perm   1 sec   (6794 perm/sec)   p_kst 6.683000e-01   p_cons 6.464000e-01   p_joint 8.481000e-01

Outputting figure to mutsig2_images.part000000000105/MFSD6.2_2400_10000_0.6683_0.6464_0.8481.png
                gene_name: MFSD6
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 60 percent done.
MFSD6L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.510024e-02	ci left: 7.001892e-01	ci right 7.180889e-01	k: 7092	n:10000
Cons ci ratio: 5.071561e-02	ci left: 3.644048e-01	ci right 3.834687e-01	k: 3739	n:10000
KS ci ratio: 4.107303e-02	ci left: 4.667689e-01	ci right 4.864447e-01	k: 4766	n:10000
MFSD6L   10000 perm   1 sec   (7031 perm/sec)   p_kst 4.766000e-01   p_cons 3.739000e-01   p_joint 7.092000e-01

Outputting figure to mutsig2_images.part000000000105/MFSD6L.2_1765_10000_0.4766_0.3739_0.7092.png
                gene_name: MFSD6L
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 62 percent done.
MFSD7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.936928e-02	ci left: 2.944970e-01	ci right 3.126176e-01	k: 3035	n:10000
Cons ci ratio: 8.355196e-02	ci left: 1.728091e-01	ci right 1.879776e-01	k: 1803	n:10000
KS ci ratio: 2.874988e-02	ci left: 6.407601e-01	ci right 6.595523e-01	k: 6502	n:10000
MFSD7   10000 perm   1 sec   (7274 perm/sec)   p_kst 6.502000e-01   p_cons 1.803000e-01   p_joint 3.035000e-01

Outputting figure to mutsig2_images.part000000000105/MFSD7.2_1720_10000_0.6502_0.1803_0.3035.png
                gene_name: MFSD7
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 64 percent done.
MGAT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.043162e-01	ci left: 3.186407e-02	ci right 3.920972e-02	k: 354	n:10000
Cons ci ratio: 2.447923e-01	ci left: 2.193497e-02	ci right 2.814593e-02	k: 249	n:10000
KS ci ratio: 9.796826e-02	ci left: 1.311983e-01	ci right 1.448133e-01	k: 1379	n:10000
MGAT1   10000 perm   1 sec   (7524 perm/sec)   p_kst 1.379000e-01   p_cons 2.490000e-02   p_joint 3.540000e-02

Joint ci ratio: 2.163410e-01	ci left: 1.440132e-02	ci right 1.794137e-02	k: 322	n:20000
Cons ci ratio: 1.727444e-01	ci left: 2.292841e-02	ci right 2.731114e-02	k: 501	n:20000
KS ci ratio: 7.031306e-02	ci left: 1.297506e-01	ci right 1.392560e-01	k: 2689	n:20000
MGAT1   20000 perm   3 sec   (6582 perm/sec)   p_kst 1.344500e-01   p_cons 2.505000e-02   p_joint 1.610000e-02

Joint ci ratio: 4.975506e-02	ci left: 1.671508e-01	ci right 1.757129e-01	k: 5142	n:30000
Cons ci ratio: 1.209407e-01	ci left: 3.178365e-02	ci right 3.590727e-02	k: 1014	n:30000
KS ci ratio: 5.739427e-02	ci left: 1.306909e-01	ci right 1.384466e-01	k: 4036	n:30000
MGAT1   30000 perm   5 sec   (6310 perm/sec)   p_kst 1.345333e-01   p_cons 3.380000e-02   p_joint 1.714000e-01

Joint ci ratio: 6.351322e-02	ci left: 8.418170e-02	ci right 8.972843e-02	k: 3477	n:40000
Cons ci ratio: 1.047915e-01	ci left: 3.202608e-02	ci right 3.559202e-02	k: 1351	n:40000
KS ci ratio: 4.959685e-02	ci left: 1.317147e-01	ci right 1.384383e-01	k: 5402	n:40000
MGAT1   40000 perm   7 sec   (6109 perm/sec)   p_kst 1.350500e-01   p_cons 3.377500e-02   p_joint 8.692500e-02

Joint ci ratio: 4.029078e-02	ci left: 1.559633e-01	ci right 1.623963e-01	k: 7958	n:50000
Cons ci ratio: 9.332926e-02	ci left: 3.248723e-02	ci right 3.568716e-02	k: 1703	n:50000
KS ci ratio: 4.432955e-02	ci left: 1.322339e-01	ci right 1.382485e-01	k: 6761	n:50000
MGAT1   50000 perm   8 sec   (5937 perm/sec)   p_kst 1.352200e-01   p_cons 3.406000e-02   p_joint 1.591600e-01

Outputting figure to mutsig2_images.part000000000105/MGAT1.2_1342_50000_0.13522_0.03406_0.15916.png
                gene_name: MGAT1
               theta_stop: 0.093 
                    nperm: 50000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.034 
      ci_cons_bounds_left: 0.032 
     ci_cons_bounds_right: 0.036 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.16 

Current progress: 66 percent done.
MGAT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.610159e-02	ci left: 6.836528e-01	ci right 7.018348e-01	k: 6928	n:10000
KS ci ratio: 2.413562e-02	ci left: 7.162348e-01	ci right 7.338340e-01	k: 7251	n:10000
MGAT2   10000 perm   1 sec   (7337 perm/sec)   p_kst 7.251000e-01   p_cons 6.928000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000105/MGAT2.2_1348_10000_0.7251_0.6928_1.png
                gene_name: MGAT2
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
MGAT4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.506179e-02	ci left: 8.646806e-01	ci right 8.779023e-01	k: 8714	n:10000
KS ci ratio: 1.126343e-02	ci left: 9.184254e-01	ci right 9.289262e-01	k: 9238	n:10000
MGAT4A   10000 perm   1 sec   (7115 perm/sec)   p_kst 9.238000e-01   p_cons 8.714000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000105/MGAT4A.2_1770_10000_0.9238_0.8714_1.png
                gene_name: MGAT4A
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
MGEA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.920191e-02	ci left: 7.986185e-01	ci right 8.142026e-01	k: 8065	n:10000
Cons ci ratio: 1.618433e-02	ci left: 8.473340e-01	ci right 8.612589e-01	k: 8544	n:10000
KS ci ratio: 4.018633e-02	ci left: 4.776581e-01	ci right 4.973492e-01	k: 4875	n:10000
MGEA5   10000 perm   2 sec   (6603 perm/sec)   p_kst 4.875000e-01   p_cons 8.544000e-01   p_joint 8.065000e-01

Outputting figure to mutsig2_images.part000000000105/MGEA5.2_2815_10000_0.4875_0.8544_0.8065.png
                gene_name: MGEA5
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 72 percent done.
MGST1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.796730e-02	ci left: 3.046112e-01	ci right 3.228974e-01	k: 3137	n:10000
KS ci ratio: 3.452240e-03	ci left: 9.904966e-01	ci right 9.940075e-01	k: 9924	n:10000
MGST1   10000 perm   1 sec   (7807 perm/sec)   p_kst 9.924000e-01   p_cons 3.137000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000105/MGST1.2_480_10000_0.9924_0.3137_1.png
                gene_name: MGST1
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 74 percent done.
MIB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.073706e-02	ci left: 4.708643e-01	ci right 4.905469e-01	k: 4807	n:10000
KS ci ratio: 1.576595e-02	ci left: 8.538604e-01	ci right 8.675287e-01	k: 8608	n:10000
MIB1   10000 perm   2 sec   (6615 perm/sec)   p_kst 8.608000e-01   p_cons 4.807000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000105/MIB1.2_3105_10000_0.8608_0.4807_1.png
                gene_name: MIB1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
MICAL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.814299e-02	ci left: 8.159855e-01	ci right 8.310256e-01	k: 8236	n:10000
Cons ci ratio: 9.069448e-02	ci left: 1.502147e-01	ci right 1.645855e-01	k: 1573	n:10000
KS ci ratio: 4.295548e-02	ci left: 4.445057e-01	ci right 4.641209e-01	k: 4543	n:10000
MICAL1   10000 perm   2 sec   (6338 perm/sec)   p_kst 4.543000e-01   p_cons 1.573000e-01   p_joint 8.236000e-01

Outputting figure to mutsig2_images.part000000000105/MICAL1.2_3300_10000_0.4543_0.1573_0.8236.png
                gene_name: MICAL1
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 78 percent done.
MICAL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.018079e-02	ci left: 7.823898e-01	ci right 7.984406e-01	k: 7905	n:10000
Cons ci ratio: 2.280349e-01	ci left: 2.542102e-02	ci right 3.205731e-02	k: 286	n:10000
KS ci ratio: 8.477335e-03	ci left: 9.511695e-01	ci right 9.593627e-01	k: 9554	n:10000
MICAL2   10000 perm   2 sec   (6266 perm/sec)   p_kst 9.554000e-01   p_cons 2.860000e-02   p_joint 7.905000e-01

Joint ci ratio: 1.901852e-02	ci left: 6.733838e-01	ci right 6.863639e-01	k: 13598	n:20000
Cons ci ratio: 1.622704e-01	ci left: 2.604555e-02	ci right 3.069292e-02	k: 566	n:20000
KS ci ratio: 5.921060e-03	ci left: 9.534778e-01	ci right 9.591885e-01	k: 19128	n:20000
MICAL2   20000 perm   4 sec   (5693 perm/sec)   p_kst 9.564000e-01   p_cons 2.830000e-02   p_joint 6.799000e-01

Joint ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
Cons ci ratio: 1.315030e-01	ci left: 2.687203e-02	ci right 3.068662e-02	k: 862	n:30000
KS ci ratio: 4.827971e-03	ci left: 9.541305e-01	ci right 9.587806e-01	k: 28695	n:30000
MICAL2   30000 perm   6 sec   (5436 perm/sec)   p_kst 9.565000e-01   p_cons 2.873333e-02   p_joint 1

Joint ci ratio: 9.799510e-05	ci left: 9.999078e-01	ci right 1	k: 40000	n:40000
Cons ci ratio: 1.125168e-01	ci left: 2.779061e-02	ci right 3.112816e-02	k: 1177	n:40000
KS ci ratio: 4.243199e-03	ci left: 9.531780e-01	ci right 9.572555e-01	k: 38210	n:40000
MICAL2   40000 perm   8 sec   (5194 perm/sec)   p_kst 9.552500e-01   p_cons 2.942500e-02   p_joint 1

Joint ci ratio: 7.839686e-05	ci left: 9.999262e-01	ci right 1	k: 50000	n:50000
Cons ci ratio: 1.006912e-01	ci left: 2.793671e-02	ci right 3.091826e-02	k: 1470	n:50000
KS ci ratio: 3.798164e-03	ci left: 9.533298e-01	ci right 9.569771e-01	k: 47759	n:50000
MICAL2   50000 perm   10 sec   (5058 perm/sec)   p_kst 9.551800e-01   p_cons 2.940000e-02   p_joint 1

Joint ci ratio: 6.533116e-05	ci left: 9.999385e-01	ci right 1	k: 60000	n:60000
Cons ci ratio: 9.241016e-02	ci left: 2.776953e-02	ci right 3.047627e-02	k: 1746	n:60000
KS ci ratio: 3.475754e-03	ci left: 9.532769e-01	ci right 9.566123e-01	k: 57298	n:60000
MICAL2   60000 perm   12 sec   (4958 perm/sec)   p_kst 9.549667e-01   p_cons 2.910000e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000105/MICAL2.2_3475_60000_0.95497_0.0291_1.png
                gene_name: MICAL2
               theta_stop: 0.092 
                    nperm: 60000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.029 
      ci_cons_bounds_left: 0.028 
     ci_cons_bounds_right: 0.030 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
MICALL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.698429e-02	ci left: 2.464796e-01	ci right 2.636633e-01	k: 2550	n:10000
Cons ci ratio: 9.503224e-02	ci left: 1.384471e-01	ci right 1.523602e-01	k: 1453	n:10000
KS ci ratio: 3.044550e-02	ci left: 6.141199e-01	ci right 6.332080e-01	k: 6237	n:10000
MICALL1   10000 perm   1 sec   (6798 perm/sec)   p_kst 6.237000e-01   p_cons 1.453000e-01   p_joint 2.550000e-01

Outputting figure to mutsig2_images.part000000000105/MICALL1.2_2656_10000_0.6237_0.1453_0.255.png
                gene_name: MICALL1
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 82 percent done.
MID1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.184739e-03	ci left: 9.725959e-01	ci right 9.787227e-01	k: 9758	n:10000
Cons ci ratio: 2.682125e-02	ci left: 6.718638e-01	ci right 6.902306e-01	k: 6811	n:10000
KS ci ratio: 4.484027e-02	ci left: 4.233590e-01	ci right 4.428800e-01	k: 4331	n:10000
MID1   10000 perm   1 sec   (7147 perm/sec)   p_kst 4.331000e-01   p_cons 6.811000e-01   p_joint 9.758000e-01

Outputting figure to mutsig2_images.part000000000105/MID1.2_2040_10000_0.4331_0.6811_0.9758.png
                gene_name: MID1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 84 percent done.
MID2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.751375e-02	ci left: 5.120544e-01	ci right 5.317328e-01	k: 5219	n:10000
Cons ci ratio: 3.776400e-03	ci left: 9.888388e-01	ci right 9.926671e-01	k: 9909	n:10000
KS ci ratio: 5.756597e-02	ci left: 3.075869e-01	ci right 3.259199e-01	k: 3167	n:10000
MID2   10000 perm   2 sec   (6563 perm/sec)   p_kst 3.167000e-01   p_cons 9.909000e-01   p_joint 5.219000e-01

Outputting figure to mutsig2_images.part000000000105/MID2.2_2248_10000_0.3167_0.9909_0.5219.png
                gene_name: MID2
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 86 percent done.
MIER2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.144913e-02	ci left: 3.577420e-01	ci right 3.767354e-01	k: 3672	n:10000
Cons ci ratio: 4.974422e-02	ci left: 3.734575e-01	ci right 3.926107e-01	k: 3830	n:10000
KS ci ratio: 8.265884e-02	ci left: 1.759564e-01	ci right 1.912283e-01	k: 1835	n:10000
MIER2   10000 perm   1 sec   (7034 perm/sec)   p_kst 1.835000e-01   p_cons 3.830000e-01   p_joint 3.672000e-01

Outputting figure to mutsig2_images.part000000000105/MIER2.2_1694_10000_0.1835_0.383_0.3672.png
                gene_name: MIER2
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 88 percent done.
MIER3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.479197e-02	ci left: 8.687674e-01	ci right 8.818131e-01	k: 8754	n:10000
Cons ci ratio: 3.676153e-02	ci left: 5.221621e-01	ci right 5.418192e-01	k: 5320	n:10000
KS ci ratio: 2.587498e-02	ci left: 6.873824e-01	ci right 7.055030e-01	k: 6965	n:10000
MIER3   10000 perm   1 sec   (6906 perm/sec)   p_kst 6.965000e-01   p_cons 5.320000e-01   p_joint 8.754000e-01

Outputting figure to mutsig2_images.part000000000105/MIER3.2_1702_10000_0.6965_0.532_0.8754.png
                gene_name: MIER3
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 90 percent done.
MIIP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.124198e-02	ci left: 6.018656e-01	ci right 6.210694e-01	k: 6115	n:10000
KS ci ratio: 1.341604e-02	ci left: 8.890312e-01	ci right 9.011376e-01	k: 8952	n:10000
MIIP   10000 perm   1 sec   (7141 perm/sec)   p_kst 8.952000e-01   p_cons 6.115000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000105/MIIP.2_1203_10000_0.8952_0.6115_1.png
                gene_name: MIIP
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
MINK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.952147e-02	ci left: 1.275764e-01	ci right 1.410375e-01	k: 1342	n:10000
Cons ci ratio: 1.950999e-01	ci left: 3.500453e-02	ci right 4.266711e-02	k: 387	n:10000
KS ci ratio: 5.039228e-02	ci left: 3.673888e-01	ci right 3.864829e-01	k: 3769	n:10000
MINK1   10000 perm   2 sec   (5679 perm/sec)   p_kst 3.769000e-01   p_cons 3.870000e-02   p_joint 1.342000e-01

Joint ci ratio: 5.678858e-02	ci left: 1.869075e-01	ci right 1.978821e-01	k: 3847	n:20000
Cons ci ratio: 1.377751e-01	ci left: 3.621414e-02	ci right 4.162097e-02	k: 777	n:20000
KS ci ratio: 3.579999e-02	ci left: 3.680350e-01	ci right 3.815014e-01	k: 7495	n:20000
MINK1   20000 perm   4 sec   (5300 perm/sec)   p_kst 3.747500e-01   p_cons 3.885000e-02   p_joint 1.923500e-01

Joint ci ratio: 6.310390e-02	ci left: 1.103588e-01	ci right 1.175828e-01	k: 3418	n:30000
Cons ci ratio: 1.105850e-01	ci left: 3.797276e-02	ci right 4.245017e-02	k: 1205	n:30000
KS ci ratio: 2.929716e-02	ci left: 3.682213e-01	ci right 3.792031e-01	k: 11211	n:30000
MINK1   30000 perm   6 sec   (5130 perm/sec)   p_kst 3.737000e-01   p_cons 4.016667e-02   p_joint 1.139333e-01

Joint ci ratio: 5.461370e-02	ci left: 1.109752e-01	ci right 1.172309e-01	k: 4563	n:40000
Cons ci ratio: 9.564589e-02	ci left: 3.836926e-02	ci right 4.224784e-02	k: 1611	n:40000
KS ci ratio: 2.538336e-02	ci left: 3.687563e-01	ci right 3.782620e-01	k: 14940	n:40000
MINK1   40000 perm   8 sec   (5000 perm/sec)   p_kst 3.735000e-01   p_cons 4.027500e-02   p_joint 1.140750e-01

Outputting figure to mutsig2_images.part000000000105/MINK1.2_3894_40000_0.3735_0.040275_0.11407.png
                gene_name: MINK1
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.040 
      ci_cons_bounds_left: 0.038 
     ci_cons_bounds_right: 0.042 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 94 percent done.
MIPEP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.998010e-03	ci left: 9.876314e-01	ci right 9.916757e-01	k: 9898	n:10000
Cons ci ratio: 6.933755e-02	ci left: 2.337305e-01	ci right 2.506200e-01	k: 2421	n:10000
KS ci ratio: 6.218018e-02	ci left: 2.754728e-01	ci right 2.932529e-01	k: 2843	n:10000
MIPEP   10000 perm   1 sec   (6696 perm/sec)   p_kst 2.843000e-01   p_cons 2.421000e-01   p_joint 9.898000e-01

Outputting figure to mutsig2_images.part000000000105/MIPEP.2_2218_10000_0.2843_0.2421_0.9898.png
                gene_name: MIPEP
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 96 percent done.
MITD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.909943e-03	ci left: 9.351657e-01	ci right 9.445760e-01	k: 9400	n:10000
Cons ci ratio: 3.617512e-02	ci left: 5.301711e-01	ci right 5.498056e-01	k: 5400	n:10000
KS ci ratio: 1.608669e-02	ci left: 8.488632e-01	ci right 8.627288e-01	k: 8559	n:10000
MITD1   10000 perm   1 sec   (7607 perm/sec)   p_kst 8.559000e-01   p_cons 5.400000e-01   p_joint 9.400000e-01

Outputting figure to mutsig2_images.part000000000105/MITD1.2_778_10000_0.8559_0.54_0.94.png
                gene_name: MITD1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.94 

Current progress: 98 percent done.
MKX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.428092e-02	ci left: 7.138119e-01	ci right 7.314582e-01	k: 7227	n:10000
KS ci ratio: 4.248217e-02	ci left: 4.499948e-01	ci right 4.696286e-01	k: 4598	n:10000
MKX   10000 perm   1 sec   (7290 perm/sec)   p_kst 4.598000e-01   p_cons 7.227000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000105/MKX.2_1083_10000_0.4598_0.7227_1.png
                gene_name: MKX
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000105
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 105 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1645>
Subject: Job 8004271: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1645>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000106> was used as the working directory.
Started at Sun Nov 11 15:08:20 2012
Results reported at Sun Nov 11 15:18:01 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000106.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000106.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 106  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000106.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    623.55 sec.
    Max Memory :      4686 MB
    Max Swap   :      7120 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
106
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 106
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 106: processing genes 9500 - 9590
Calculating significance of each gene.
Using projection method.
9500	MLANA	1
9501	MLC1	1
9502	MLEC	2.768292e-01
9503	MLF1	1.626986e-01
9504	MLF1IP	1
9505	MLF2	1
9506	MLH1	6.937788e-01
9507	MLH3	2.540052e-01
9508	MLKL	2.143713e-01
9509	MLL	9.999997e-01
9510	MLL2	1.714328e-01
9511	MLL3	9.938355e-01
9512	MLL4	8.156180e-01
9513	MLL5	1
9514	MLLT1	6.956229e-01
9515	MLLT10	8.670803e-01
9516	MLLT11	3.096400e-01
9517	MLLT3	1
9518	MLLT4	1
9519	MLLT6	1
9520	MLN	1
9521	MLNR	2.229857e-01
9522	MLPH	3.983399e-01
9523	MLST8	8.064096e-01
9524	MLX	1
9525	MLXIP	5.638385e-01
9526	MLXIPL	7.499609e-01
9527	MLYCD	6.913927e-01
9528	MMAA	1.408692e-01
9529	MMAB	3.244015e-01
9530	MMACHC	1
9531	MMADHC	5.731732e-01
9532	MMD	6.596418e-01
9533	MMD2	1.224487e-02
9534	MME	8.776559e-01
9535	MMEL1	8.136151e-01
9536	MMGT1	1.519551e-01
9537	MMP1	1
9538	MMP10	1
9539	MMP11	5.599727e-01
9540	MMP12	6.861044e-01
9541	MMP13	3.222014e-01
9542	MMP14	5.312746e-01
9543	MMP15	7.686001e-01
9544	MMP16	3.337448e-01
9545	MMP17	6.109289e-01
9546	MMP19	4.009441e-01
9547	MMP2	1
9548	MMP20	7.727538e-02
9549	MMP21	1
9550	MMP24	8.588268e-01
9551	MMP25	6.496296e-01
9552	MMP26	1
9553	MMP27	8.140160e-01
9554	MMP28	1
9555	MMP3	1
9556	MMP7	1
9557	MMP8	2.027309e-03
9558	MMP9	8.103622e-02
9559	MMRN1	4.318101e-01
9560	MMRN2	1
9561	MMS19	9.719409e-01
9562	MN1	3.728265e-01
9563	MNAT1	1
9564	MND1	1
9565	MNDA	3.147525e-04
9566	MNS1	2.524878e-01
9567	MNT	6.797757e-01
9568	MNX1	1.047794e-01
9569	MOAP1	5.484031e-01
9570	MOB2	6.437462e-01
9571	MOBKL1A	1
9572	MOBKL1B	1
9573	MOBKL2A	1
9574	MOBKL2B	2.530828e-01
9575	MOBKL2C	1
9576	MOBKL3	1
9577	MOBP	1
9578	MOCOS	1
9579	MOCS1	6.463961e-01
9580	MOCS2	6.218887e-01
9581	MOCS3	1
9582	MOG	4.275216e-02
9583	MOGAT1	3.907654e-01
9584	MOGAT2	5.129776e-01
9585	MOGAT3	1
9586	MOGS	7.735042e-01
9587	MON1A	6.125176e-01
9588	MON1B	6.490302e-01
9589	MON2	9.741331e-01
9590	MORC1	8.757362e-01
Done

Running MutSig 2:
Scatter job 106: processing genes 9500 - 9590
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
MLL2
Processing conservation and coverage...
59% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.134966e-02	ci left: 3.586369e-01	ci right 3.776400e-01	k: 3681	n:10000
Cons ci ratio: 6.892452e-02	ci left: 2.359040e-01	ci right 2.528451e-01	k: 2443	n:10000
KS ci ratio: 5.340906e-02	ci left: 3.406464e-01	ci right 3.594411e-01	k: 3500	n:10000
MLL2   10000 perm   5 sec   (2185 perm/sec)   p_kst 3.500000e-01   p_cons 2.443000e-01   p_joint 3.681000e-01

Outputting figure to mutsig2_images.part000000000106/MLL2.41_16830_10000_0.35_0.2443_0.3681.png
                gene_name: MLL2
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 2 percent done.
MLL3
Processing conservation and coverage...
66% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.222691e-01	ci left: 8.747398e-02	ci right 9.896426e-02	k: 931	n:10000
Cons ci ratio: 1.277098e-02	ci left: 8.981605e-01	ci right 9.098029e-01	k: 9041	n:10000
KS ci ratio: 3.376227e-01	ci left: 1.105573e-02	ci right 1.563427e-02	k: 132	n:10000
MLL3   10000 perm   4 sec   (2478 perm/sec)   p_kst 1.320000e-02   p_cons 9.041000e-01   p_joint 9.310000e-02

Joint ci ratio: 1.309216e-01	ci left: 4.008492e-02	ci right 4.574894e-02	k: 857	n:20000
Cons ci ratio: 8.958594e-03	ci left: 9.013108e-01	ci right 9.094709e-01	k: 18109	n:20000
KS ci ratio: 2.317754e-01	ci left: 1.246477e-02	ci right 1.577870e-02	k: 281	n:20000
MLL3   20000 perm   9 sec   (2344 perm/sec)   p_kst 1.405000e-02   p_cons 9.054500e-01   p_joint 4.285000e-02

Joint ci ratio: 1.273824e-01	ci left: 2.864765e-02	ci right 3.257728e-02	k: 917	n:30000
Cons ci ratio: 7.314979e-03	ci left: 9.020661e-01	ci right 9.087218e-01	k: 27163	n:30000
KS ci ratio: 1.917907e-01	ci left: 1.241520e-02	ci right 1.508019e-02	k: 411	n:30000
MLL3   30000 perm   13 sec   (2301 perm/sec)   p_kst 1.370000e-02   p_cons 9.054333e-01   p_joint 3.056667e-02

Joint ci ratio: 1.105032e-01	ci left: 2.881216e-02	ci right 3.220645e-02	k: 1219	n:40000
Cons ci ratio: 6.360949e-03	ci left: 9.018059e-01	ci right 9.075852e-01	k: 36189	n:40000
KS ci ratio: 1.663011e-01	ci left: 1.255978e-02	ci right 1.486162e-02	k: 547	n:40000
MLL3   40000 perm   18 sec   (2270 perm/sec)   p_kst 1.367500e-02   p_cons 9.047250e-01   p_joint 3.047500e-02

Joint ci ratio: 8.535006e-02	ci left: 3.874966e-02	ci right 4.222394e-02	k: 2023	n:50000
Cons ci ratio: 5.869221e-03	ci left: 8.965481e-01	ci right 9.018454e-01	k: 44961	n:50000
KS ci ratio: 1.492980e-01	ci left: 1.258383e-02	ci right 1.463321e-02	k: 679	n:50000
MLL3   50000 perm   22 sec   (2240 perm/sec)   p_kst 1.358000e-02   p_cons 8.992200e-01   p_joint 4.046000e-02

Joint ci ratio: 8.130143e-02	ci left: 3.578149e-02	ci right 3.883015e-02	k: 2237	n:60000
Cons ci ratio: 5.797821e-03	ci left: 8.813940e-01	ci right 8.865355e-01	k: 53039	n:60000
KS ci ratio: 1.356176e-01	ci left: 1.280124e-02	ci right 1.467957e-02	k: 823	n:60000
MLL3   60000 perm   27 sec   (2203 perm/sec)   p_kst 1.371667e-02   p_cons 8.839833e-01   p_joint 3.728333e-02

Joint ci ratio: 8.575411e-02	ci left: 2.774133e-02	ci right 3.024077e-02	k: 2028	n:70000
Cons ci ratio: 5.353434e-03	ci left: 8.821380e-01	ci right 8.868873e-01	k: 61917	n:70000
KS ci ratio: 1.264498e-01	ci left: 1.268585e-02	ci right 1.441197e-02	k: 947	n:70000
MLL3   70000 perm   32 sec   (2173 perm/sec)   p_kst 1.352857e-02   p_cons 8.845286e-01   p_joint 2.897143e-02

Joint ci ratio: 8.057166e-02	ci left: 2.757841e-02	ci right 2.990593e-02	k: 2298	n:80000
Cons ci ratio: 4.985045e-03	ci left: 8.832229e-01	ci right 8.876491e-01	k: 70836	n:80000
KS ci ratio: 1.173763e-01	ci left: 1.294233e-02	ci right 1.456821e-02	k: 1099	n:80000
MLL3   80000 perm   37 sec   (2147 perm/sec)   p_kst 1.373750e-02   p_cons 8.854500e-01   p_joint 2.872500e-02

Joint ci ratio: 7.240040e-02	ci left: 3.040119e-02	ci right 3.269580e-02	k: 2838	n:90000
Cons ci ratio: 4.702633e-03	ci left: 8.832337e-01	ci right 8.874081e-01	k: 79680	n:90000
KS ci ratio: 1.110509e-01	ci left: 1.289668e-02	ci right 1.442379e-02	k: 1228	n:90000
MLL3   90000 perm   42 sec   (2122 perm/sec)   p_kst 1.364444e-02   p_cons 8.853333e-01   p_joint 3.153333e-02

Joint ci ratio: 6.607439e-02	ci left: 3.287544e-02	ci right 3.513169e-02	k: 3399	n:100000
Cons ci ratio: 4.472349e-03	ci left: 8.828353e-01	ci right 8.868024e-01	k: 88483	n:100000
KS ci ratio: 1.058466e-01	ci left: 1.281335e-02	ci right 1.425507e-02	k: 1352	n:100000
MLL3   100000 perm   48 sec   (2099 perm/sec)   p_kst 1.352000e-02   p_cons 8.848300e-01   p_joint 3.399000e-02

Joint ci ratio: 6.362737e-02	ci left: 3.229225e-02	ci right 3.442335e-02	k: 3668	n:110000
Cons ci ratio: 4.265597e-03	ci left: 8.828620e-01	ci right 8.866450e-01	k: 97324	n:110000
KS ci ratio: 1.007255e-01	ci left: 1.289725e-02	ci right 1.427403e-02	k: 1493	n:110000
MLL3   110000 perm   53 sec   (2079 perm/sec)   p_kst 1.357273e-02   p_cons 8.847636e-01   p_joint 3.334545e-02

Joint ci ratio: 6.221302e-02	ci left: 3.102778e-02	ci right 3.302826e-02	k: 3842	n:120000
Cons ci ratio: 4.086767e-03	ci left: 8.828040e-01	ci right 8.864274e-01	k: 106155	n:120000
KS ci ratio: 9.712896e-02	ci left: 1.274080e-02	ci right 1.404954e-02	k: 1606	n:120000
MLL3   120000 perm   58 sec   (2059 perm/sec)   p_kst 1.338333e-02   p_cons 8.846250e-01   p_joint 3.201667e-02

Outputting figure to mutsig2_images.part000000000106/MLL3.30_14972_120000_0.013383_0.88462_0.032017.png
                gene_name: MLL3
               theta_stop: 0.097 
                    nperm: 120000 
                     p_ks: 0.013 
        ci_ks_bounds_left: 0.013 
       ci_ks_bounds_right: 0.014 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.032 
     ci_joint_bounds_left: 0.031 
    ci_joint_bounds_right: 0.033 

Current progress: 4 percent done.
MMP16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.096618e-02	ci left: 4.680674e-01	ci right 4.877455e-01	k: 4779	n:10000
Cons ci ratio: 2.129120e-02	ci left: 7.638510e-01	ci right 7.803902e-01	k: 7722	n:10000
KS ci ratio: 5.584290e-02	ci left: 3.207846e-01	ci right 3.393145e-01	k: 3300	n:10000
MMP16   10000 perm   2 sec   (4715 perm/sec)   p_kst 3.300000e-01   p_cons 7.722000e-01   p_joint 4.779000e-01

Outputting figure to mutsig2_images.part000000000106/MMP16.16_2020_10000_0.33_0.7722_0.4779.png
                gene_name: MMP16
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 6 percent done.
MORC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.957621e-02	ci left: 6.276875e-01	ci right 6.466326e-01	k: 6372	n:10000
Cons ci ratio: 7.262343e-03	ci left: 9.632049e-01	ci right 9.703198e-01	k: 9669	n:10000
KS ci ratio: 4.344381e-02	ci left: 4.389180e-01	ci right 4.585119e-01	k: 4487	n:10000
MORC1   10000 perm   2 sec   (4987 perm/sec)   p_kst 4.487000e-01   p_cons 9.669000e-01   p_joint 6.372000e-01

Outputting figure to mutsig2_images.part000000000106/MORC1.11_3067_10000_0.4487_0.9669_0.6372.png
                gene_name: MORC1
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 8 percent done.
MLL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.170758e-01	ci left: 9.486876e-02	ci right 1.067649e-01	k: 1007	n:10000
Cons ci ratio: 1.571106e-01	ci left: 5.397934e-02	ci right 6.327985e-02	k: 585	n:10000
KS ci ratio: 5.631335e-02	ci left: 3.171122e-01	ci right 3.355890e-01	k: 3263	n:10000
MLL4   10000 perm   3 sec   (3804 perm/sec)   p_kst 3.263000e-01   p_cons 5.850000e-02   p_joint 1.007000e-01

Joint ci ratio: 6.437454e-02	ci left: 1.513418e-01	ci right 1.614583e-01	k: 3127	n:20000
Cons ci ratio: 1.029413e-01	ci left: 6.410982e-02	ci right 7.111653e-02	k: 1351	n:20000
KS ci ratio: 3.976983e-02	ci left: 3.203995e-01	ci right 3.334508e-01	k: 6538	n:20000
MLL4   20000 perm   6 sec   (3429 perm/sec)   p_kst 3.269000e-01   p_cons 6.755000e-02   p_joint 1.563500e-01

Joint ci ratio: 5.137284e-02	ci left: 1.583416e-01	ci right 1.667238e-01	k: 4875	n:30000
Cons ci ratio: 8.354483e-02	ci left: 6.550338e-02	ci right 7.124721e-02	k: 2050	n:30000
KS ci ratio: 3.246579e-02	ci left: 3.216918e-01	ci right 3.323417e-01	k: 9810	n:30000
MLL4   30000 perm   9 sec   (3328 perm/sec)   p_kst 3.270000e-01   p_cons 6.833333e-02   p_joint 1.625000e-01

Outputting figure to mutsig2_images.part000000000106/MLL4.10_8296_30000_0.327_0.068333_0.1625.png
                gene_name: MLL4
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.068 
      ci_cons_bounds_left: 0.066 
     ci_cons_bounds_right: 0.071 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 10 percent done.
MLH3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.657006e-02	ci left: 5.247648e-01	ci right 5.444151e-01	k: 5346	n:10000
Cons ci ratio: 5.864176e-03	ci left: 9.751447e-01	ci right 9.809722e-01	k: 9782	n:10000
KS ci ratio: 5.715629e-02	ci left: 3.106623e-01	ci right 3.290427e-01	k: 3198	n:10000
MLH3   10000 perm   2 sec   (4790 perm/sec)   p_kst 3.198000e-01   p_cons 9.782000e-01   p_joint 5.346000e-01

Outputting figure to mutsig2_images.part000000000106/MLH3.9_4410_10000_0.3198_0.9782_0.5346.png
                gene_name: MLH3
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 12 percent done.
MME
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.635751e-02	ci left: 5.276680e-01	ci right 5.473101e-01	k: 5375	n:10000
Cons ci ratio: 5.372743e-02	ci left: 3.379640e-01	ci right 3.567250e-01	k: 3473	n:10000
KS ci ratio: 4.091696e-02	ci left: 4.686667e-01	ci right 4.883458e-01	k: 4785	n:10000
MME   10000 perm   2 sec   (5311 perm/sec)   p_kst 4.785000e-01   p_cons 3.473000e-01   p_joint 5.375000e-01

Outputting figure to mutsig2_images.part000000000106/MME.9_2341_10000_0.4785_0.3473_0.5375.png
                gene_name: MME
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 14 percent done.
MMP8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.286200e-02	ci left: 3.453165e-01	ci right 3.641682e-01	k: 3547	n:10000
Cons ci ratio: 4.685049e-02	ci left: 4.020311e-01	ci right 4.214204e-01	k: 4117	n:10000
KS ci ratio: 6.573861e-02	ci left: 2.535997e-01	ci right 2.709390e-01	k: 2622	n:10000
MMP8   10000 perm   2 sec   (5363 perm/sec)   p_kst 2.622000e-01   p_cons 4.117000e-01   p_joint 3.547000e-01

Outputting figure to mutsig2_images.part000000000106/MMP8.8_1444_10000_0.2622_0.4117_0.3547.png
                gene_name: MMP8
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 16 percent done.
MNDA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.001014e-02	ci left: 7.852285e-01	ci right 8.012004e-01	k: 7933	n:10000
Cons ci ratio: 3.571168e-02	ci left: 5.365801e-01	ci right 5.561928e-01	k: 5464	n:10000
KS ci ratio: 3.169744e-02	ci left: 5.949377e-01	ci right 6.142014e-01	k: 6046	n:10000
MNDA   10000 perm   2 sec   (5954 perm/sec)   p_kst 6.046000e-01   p_cons 5.464000e-01   p_joint 7.933000e-01

Outputting figure to mutsig2_images.part000000000106/MNDA.8_1248_10000_0.6046_0.5464_0.7933.png
                gene_name: MNDA
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 18 percent done.
MON2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.325116e-02	ci left: 2.686408e-01	ci right 2.862890e-01	k: 2774	n:10000
Cons ci ratio: 1.546038e-01	ci left: 5.571306e-02	ci right 6.514503e-02	k: 603	n:10000
KS ci ratio: 1.514897e-02	ci left: 8.633528e-01	ci right 8.766308e-01	k: 8701	n:10000
MON2   10000 perm   2 sec   (4265 perm/sec)   p_kst 8.701000e-01   p_cons 6.030000e-02   p_joint 2.774000e-01

Joint ci ratio: 4.371577e-02	ci left: 2.804390e-01	ci right 2.930230e-01	k: 5734	n:20000
Cons ci ratio: 1.017359e-01	ci left: 6.557403e-02	ci right 7.265187e-02	k: 1381	n:20000
KS ci ratio: 9.758432e-03	ci left: 8.853276e-01	ci right 8.940588e-01	k: 17795	n:20000
MON2   20000 perm   5 sec   (3900 perm/sec)   p_kst 8.897500e-01   p_cons 6.905000e-02   p_joint 2.867000e-01

Joint ci ratio: 3.940644e-02	ci left: 2.431211e-01	ci right 2.529277e-01	k: 7440	n:30000
Cons ci ratio: 8.221867e-02	ci left: 6.753021e-02	ci right 7.335331e-02	k: 2112	n:30000
KS ci ratio: 7.579655e-03	ci left: 8.957040e-01	ci right 9.025519e-01	k: 26975	n:30000
MON2   30000 perm   8 sec   (3740 perm/sec)   p_kst 8.991667e-01   p_cons 7.040000e-02   p_joint 2.480000e-01

Outputting figure to mutsig2_images.part000000000106/MON2.8_5294_30000_0.89917_0.0704_0.248.png
                gene_name: MON2
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.070 
      ci_cons_bounds_left: 0.068 
     ci_cons_bounds_right: 0.073 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 20 percent done.
MLLT10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.112090e-02	ci left: 2.246444e-01	ci right 2.413115e-01	k: 2329	n:10000
Cons ci ratio: 8.892412e-02	ci left: 1.554168e-01	ci right 1.699803e-01	k: 1626	n:10000
KS ci ratio: 5.983582e-02	ci left: 2.912258e-01	ci right 3.092906e-01	k: 3002	n:10000
MLLT10   10000 perm   2 sec   (4733 perm/sec)   p_kst 3.002000e-01   p_cons 1.626000e-01   p_joint 2.329000e-01

Outputting figure to mutsig2_images.part000000000106/MLLT10.6_3172_10000_0.3002_0.1626_0.2329.png
                gene_name: MLLT10
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 22 percent done.
MMP9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.860876e-02	ci left: 2.375838e-01	ci right 2.545644e-01	k: 2460	n:10000
Cons ci ratio: 1.552184e-02	ci left: 8.576357e-01	ci right 8.711513e-01	k: 8645	n:10000
KS ci ratio: 9.316556e-02	ci left: 1.433484e-01	ci right 1.574560e-01	k: 1503	n:10000
MMP9   10000 perm   2 sec   (5864 perm/sec)   p_kst 1.503000e-01   p_cons 8.645000e-01   p_joint 2.460000e-01

Outputting figure to mutsig2_images.part000000000106/MMP9.6_2176_10000_0.1503_0.8645_0.246.png
                gene_name: MMP9
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 24 percent done.
MMRN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.722167e-02	ci left: 5.159569e-01	ci right 5.356281e-01	k: 5258	n:10000
Cons ci ratio: 4.902580e-02	ci left: 3.803239e-01	ci right 3.995402e-01	k: 3899	n:10000
KS ci ratio: 4.810093e-02	ci left: 3.893828e-01	ci right 4.086761e-01	k: 3990	n:10000
MMRN1   10000 perm   2 sec   (5002 perm/sec)   p_kst 3.990000e-01   p_cons 3.899000e-01   p_joint 5.258000e-01

Outputting figure to mutsig2_images.part000000000106/MMRN1.6_3719_10000_0.399_0.3899_0.5258.png
                gene_name: MMRN1
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 26 percent done.
MLL
Processing conservation and coverage...
82% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.100668e-02	ci left: 7.686102e-01	ci right 7.850283e-01	k: 7769	n:10000
Cons ci ratio: 1.690602e-02	ci left: 8.359236e-01	ci right 8.502760e-01	k: 8432	n:10000
KS ci ratio: 4.057425e-02	ci left: 4.728623e-01	ci right 4.925478e-01	k: 4827	n:10000
MLL   10000 perm   3 sec   (3068 perm/sec)   p_kst 4.827000e-01   p_cons 8.432000e-01   p_joint 7.769000e-01

Outputting figure to mutsig2_images.part000000000106/MLL.5_12054_10000_0.4827_0.8432_0.7769.png
                gene_name: MLL
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 28 percent done.
MMP20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.572163e-02	ci left: 2.536986e-01	ci right 2.710400e-01	k: 2623	n:10000
Cons ci ratio: 1.310673e-01	ci left: 7.669486e-02	ci right 8.755004e-02	k: 820	n:10000
KS ci ratio: 2.847238e-02	ci left: 6.451864e-01	ci right 6.639235e-01	k: 6546	n:10000
MMP20   10000 perm   2 sec   (5948 perm/sec)   p_kst 6.546000e-01   p_cons 8.200000e-02   p_joint 2.623000e-01

Joint ci ratio: 4.510787e-02	ci left: 2.678766e-01	ci right 2.802892e-01	k: 5481	n:20000
Cons ci ratio: 9.396444e-02	ci left: 7.627639e-02	ci right 8.384623e-02	k: 1600	n:20000
KS ci ratio: 1.972138e-02	ci left: 6.573049e-01	ci right 6.704474e-01	k: 13278	n:20000
MMP20   20000 perm   4 sec   (5378 perm/sec)   p_kst 6.639000e-01   p_cons 8.000000e-02   p_joint 2.740500e-01

Outputting figure to mutsig2_images.part000000000106/MMP20.5_1492_20000_0.6639_0.08_0.27405.png
                gene_name: MMP20
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.080 
      ci_cons_bounds_left: 0.076 
     ci_cons_bounds_right: 0.084 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 30 percent done.
MN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.597292e-02	ci left: 6.857695e-01	ci right 7.039168e-01	k: 6949	n:10000
KS ci ratio: 2.035729e-02	ci left: 7.794504e-01	ci right 7.955817e-01	k: 7876	n:10000
MN1   10000 perm   2 sec   (5315 perm/sec)   p_kst 7.876000e-01   p_cons 6.949000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000106/MN1.5_3971_10000_0.7876_0.6949_1.png
                gene_name: MN1
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 32 percent done.
MOG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.821285e-02	ci left: 1.575769e-01	ci right 1.722188e-01	k: 1648	n:10000
Cons ci ratio: 6.545109e-02	ci left: 2.552813e-01	ci right 2.726564e-01	k: 2639	n:10000
KS ci ratio: 1.038998e-01	ci left: 1.180892e-01	ci right 1.311304e-01	k: 1245	n:10000
MOG   10000 perm   2 sec   (6226 perm/sec)   p_kst 1.245000e-01   p_cons 2.639000e-01   p_joint 1.648000e-01

Joint ci ratio: 6.281066e-02	ci left: 1.578558e-01	ci right 1.681423e-01	k: 3259	n:20000
Cons ci ratio: 4.754054e-02	ci left: 2.476311e-01	ci right 2.597406e-01	k: 5073	n:20000
KS ci ratio: 7.054046e-02	ci left: 1.290118e-01	ci right 1.384949e-01	k: 2674	n:20000
MOG   20000 perm   4 sec   (5252 perm/sec)   p_kst 1.337000e-01   p_cons 2.536500e-01   p_joint 1.629500e-01

Outputting figure to mutsig2_images.part000000000106/MOG.5_945_20000_0.1337_0.25365_0.16295.png
                gene_name: MOG
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 34 percent done.
MLL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.150553e-01	ci left: 9.798552e-02	ci right 1.100463e-01	k: 1039	n:10000
Cons ci ratio: 3.849500e-02	ci left: 4.991503e-01	ci right 5.188444e-01	k: 5090	n:10000
KS ci ratio: 1.324787e-01	ci left: 7.514340e-02	ci right 8.590246e-02	k: 804	n:10000
MLL5   10000 perm   2 sec   (4862 perm/sec)   p_kst 8.040000e-02   p_cons 5.090000e-01   p_joint 1.039000e-01

Joint ci ratio: 7.244374e-02	ci left: 1.230546e-01	ci right 1.323539e-01	k: 2553	n:20000
Cons ci ratio: 2.704564e-02	ci left: 5.052962e-01	ci right 5.192002e-01	k: 10245	n:20000
KS ci ratio: 9.386888e-02	ci left: 7.642315e-02	ci right 8.399943e-02	k: 1603	n:20000
MLL5   20000 perm   5 sec   (4410 perm/sec)   p_kst 8.015000e-02   p_cons 5.122500e-01   p_joint 1.276500e-01

Outputting figure to mutsig2_images.part000000000106/MLL5.4_5677_20000_0.08015_0.51225_0.12765.png
                gene_name: MLL5
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.080 
        ci_ks_bounds_left: 0.076 
       ci_ks_bounds_right: 0.084 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 36 percent done.
MLLT4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.444763e-02	ci left: 5.544138e-01	ci right 5.739488e-01	k: 5642	n:10000
Cons ci ratio: 2.004063e-02	ci left: 7.847215e-01	ci right 8.007076e-01	k: 7928	n:10000
KS ci ratio: 5.011454e-02	ci left: 3.699753e-01	ci right 3.890950e-01	k: 3795	n:10000
MLLT4   10000 perm   2 sec   (4483 perm/sec)   p_kst 3.795000e-01   p_cons 7.928000e-01   p_joint 5.642000e-01

Outputting figure to mutsig2_images.part000000000106/MLLT4.4_5734_10000_0.3795_0.7928_0.5642.png
                gene_name: MLLT4
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 38 percent done.
MMD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.260329e-01	ci left: 8.261521e-02	ci right 9.382602e-02	k: 881	n:10000
Cons ci ratio: 3.805205e-01	ci left: 8.505237e-03	ci right 1.258745e-02	k: 104	n:10000
KS ci ratio: 3.631366e-02	ci left: 5.282688e-01	ci right 5.479090e-01	k: 5381	n:10000
MMD2   10000 perm   2 sec   (6521 perm/sec)   p_kst 5.381000e-01   p_cons 1.040000e-02   p_joint 8.810000e-02

Joint ci ratio: 8.726152e-02	ci left: 8.763679e-02	ci right 9.568239e-02	k: 1832	n:20000
Cons ci ratio: 2.622204e-01	ci left: 9.600898e-03	ci right 1.254384e-02	k: 220	n:20000
KS ci ratio: 2.587629e-02	ci left: 5.273572e-01	ci right 5.412328e-01	k: 10686	n:20000
MMD2   20000 perm   3 sec   (5789 perm/sec)   p_kst 5.343000e-01   p_cons 1.100000e-02   p_joint 9.160000e-02

Joint ci ratio: 5.903564e-02	ci left: 1.243377e-01	ci right 1.319345e-01	k: 3843	n:30000
Cons ci ratio: 2.169337e-01	ci left: 9.598201e-03	ci right 1.196464e-02	k: 322	n:30000
KS ci ratio: 2.110999e-02	ci left: 5.290693e-01	ci right 5.403907e-01	k: 16042	n:30000
MMD2   30000 perm   5 sec   (5507 perm/sec)   p_kst 5.347333e-01   p_cons 1.073333e-02   p_joint 1.281000e-01

Joint ci ratio: 5.875048e-02	ci left: 9.720002e-02	ci right 1.031082e-01	k: 4005	n:40000
Cons ci ratio: 1.880181e-01	ci left: 9.738713e-03	ci right 1.178324e-02	k: 429	n:40000
KS ci ratio: 1.857643e-02	ci left: 5.218678e-01	ci right 5.316783e-01	k: 21071	n:40000
MMD2   40000 perm   8 sec   (5327 perm/sec)   p_kst 5.267750e-01   p_cons 1.072500e-02   p_joint 1.001250e-01

Joint ci ratio: 5.105141e-02	ci left: 1.027808e-01	ci right 1.081851e-01	k: 5273	n:50000
Cons ci ratio: 1.608416e-01	ci left: 1.079509e-02	ci right 1.270222e-02	k: 586	n:50000
KS ci ratio: 1.663322e-02	ci left: 5.218520e-01	ci right 5.306249e-01	k: 26312	n:50000
MMD2   50000 perm   10 sec   (5177 perm/sec)   p_kst 5.262400e-01   p_cons 1.172000e-02   p_joint 1.054600e-01

Joint ci ratio: 4.469157e-02	ci left: 1.111043e-01	ci right 1.161998e-01	k: 6818	n:60000
Cons ci ratio: 1.469757e-01	ci left: 1.085493e-02	ci right 1.259278e-02	k: 702	n:60000
KS ci ratio: 1.520711e-02	ci left: 5.214783e-01	ci right 5.294859e-01	k: 31529	n:60000
MMD2   60000 perm   12 sec   (5048 perm/sec)   p_kst 5.254833e-01   p_cons 1.170000e-02   p_joint 1.136333e-01

Joint ci ratio: 4.337861e-02	ci left: 1.022007e-01	ci right 1.067465e-01	k: 7312	n:70000
Cons ci ratio: 1.346816e-01	ci left: 1.115127e-02	ci right 1.277527e-02	k: 836	n:70000
KS ci ratio: 1.406290e-02	ci left: 5.223500e-01	ci right 5.297621e-01	k: 36824	n:70000
MMD2   70000 perm   14 sec   (4933 perm/sec)   p_kst 5.260571e-01   p_cons 1.194286e-02   p_joint 1.044571e-01

Joint ci ratio: 4.205833e-02	ci left: 9.588619e-02	ci right 1.000180e-01	k: 7835	n:80000
Cons ci ratio: 1.253594e-01	ci left: 1.131752e-02	ci right 1.284317e-02	k: 965	n:80000
KS ci ratio: 1.313377e-02	ci left: 5.233831e-01	ci right 5.303150e-01	k: 42148	n:80000
MMD2   80000 perm   17 sec   (4828 perm/sec)   p_kst 5.268500e-01   p_cons 1.206250e-02   p_joint 9.793750e-02

Joint ci ratio: 3.838284e-02	ci left: 1.018587e-01	ci right 1.058558e-01	k: 9346	n:90000
Cons ci ratio: 1.183970e-01	ci left: 1.132041e-02	ci right 1.275575e-02	k: 1082	n:90000
KS ci ratio: 1.235771e-02	ci left: 5.245876e-01	ci right 5.311217e-01	k: 47507	n:90000
MMD2   90000 perm   19 sec   (4727 perm/sec)   p_kst 5.278556e-01   p_cons 1.202222e-02   p_joint 1.038444e-01

Joint ci ratio: 3.796065e-02	ci left: 9.452789e-02	ci right 9.819556e-02	k: 9635	n:100000
Cons ci ratio: 1.122898e-01	ci left: 1.136348e-02	ci right 1.272504e-02	k: 1203	n:100000
KS ci ratio: 1.172794e-02	ci left: 5.245700e-01	ci right 5.307684e-01	k: 52767	n:100000
MMD2   100000 perm   22 sec   (4632 perm/sec)   p_kst 5.276700e-01   p_cons 1.203000e-02   p_joint 9.635000e-02

Joint ci ratio: 3.610105e-02	ci left: 9.505874e-02	ci right 9.856255e-02	k: 10648	n:110000
Cons ci ratio: 1.066331e-01	ci left: 1.148879e-02	ci right 1.279166e-02	k: 1334	n:110000
KS ci ratio: 1.119598e-02	ci left: 5.240989e-01	ci right 5.300088e-01	k: 57976	n:110000
MMD2   110000 perm   24 sec   (4543 perm/sec)   p_kst 5.270545e-01   p_cons 1.212727e-02   p_joint 9.680000e-02

Joint ci ratio: 3.544079e-02	ci left: 9.087469e-02	ci right 9.416170e-02	k: 11101	n:120000
Cons ci ratio: 1.017532e-01	ci left: 1.159465e-02	ci right 1.284575e-02	k: 1465	n:120000
KS ci ratio: 1.072302e-02	ci left: 5.240537e-01	ci right 5.297117e-01	k: 63226	n:120000
MMD2   120000 perm   27 sec   (4461 perm/sec)   p_kst 5.268833e-01   p_cons 1.220833e-02   p_joint 9.250833e-02

Joint ci ratio: 3.293530e-02	ci left: 9.664092e-02	ci right 9.988472e-02	k: 12773	n:130000
Cons ci ratio: 9.748727e-02	ci left: 1.168537e-02	ci right 1.289038e-02	k: 1596	n:130000
KS ci ratio: 9.880193e-03	ci left: 5.449741e-01	ci right 5.503930e-01	k: 71199	n:130000
MMD2   130000 perm   30 sec   (4386 perm/sec)   p_kst 5.476846e-01   p_cons 1.227692e-02   p_joint 9.825385e-02

Outputting figure to mutsig2_images.part000000000106/MMD2.4_841_130000_0.54768_0.012277_0.098254.png
                gene_name: MMD2
               theta_stop: 0.097 
                    nperm: 130000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.012 
      ci_cons_bounds_left: 0.012 
     ci_cons_bounds_right: 0.013 
                  p_joint: 0.098 
     ci_joint_bounds_left: 0.097 
    ci_joint_bounds_right: 0.100 

Current progress: 40 percent done.
MOGAT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.295412e-02	ci left: 8.955947e-01	ci right 9.073703e-01	k: 9016	n:10000
KS ci ratio: 2.496645e-02	ci left: 7.024085e-01	ci right 7.202682e-01	k: 7114	n:10000
MOGAT2   10000 perm   2 sec   (6024 perm/sec)   p_kst 7.114000e-01   p_cons 9.016000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000106/MOGAT2.4_1028_10000_0.7114_0.9016_1.png
                gene_name: MOGAT2
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 42 percent done.
MLKL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.314164e-01	ci left: 7.630693e-02	ci right 8.713821e-02	k: 816	n:10000
Cons ci ratio: 8.627786e-02	ci left: 1.636672e-01	ci right 1.785250e-01	k: 1710	n:10000
KS ci ratio: 9.821609e-02	ci left: 1.306108e-01	ci right 1.442011e-01	k: 1373	n:10000
MLKL   10000 perm   2 sec   (6169 perm/sec)   p_kst 1.373000e-01   p_cons 1.710000e-01   p_joint 8.160000e-02

Joint ci ratio: 6.190544e-02	ci left: 1.618052e-01	ci right 1.721918e-01	k: 3339	n:20000
Cons ci ratio: 6.074107e-02	ci left: 1.670892e-01	ci right 1.776063e-01	k: 3446	n:20000
KS ci ratio: 6.719905e-02	ci left: 1.404921e-01	ci right 1.503112e-01	k: 2907	n:20000
MLKL   20000 perm   4 sec   (5492 perm/sec)   p_kst 1.453500e-01   p_cons 1.723000e-01   p_joint 1.669500e-01

Outputting figure to mutsig2_images.part000000000106/MLKL.3_1487_20000_0.14535_0.1723_0.16695.png
                gene_name: MLKL
               theta_stop: 0.067 
                    nperm: 20000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 44 percent done.
MLPH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.025127e-02	ci left: 6.171342e-01	ci right 6.361919e-01	k: 6267	n:10000
Cons ci ratio: 6.896187e-02	ci left: 2.357064e-01	ci right 2.526429e-01	k: 2441	n:10000
KS ci ratio: 7.385874e-03	ci left: 9.620496e-01	ci right 9.692759e-01	k: 9658	n:10000
MLPH   10000 perm   2 sec   (6166 perm/sec)   p_kst 9.658000e-01   p_cons 2.441000e-01   p_joint 6.267000e-01

Outputting figure to mutsig2_images.part000000000106/MLPH.3_1863_10000_0.9658_0.2441_0.6267.png
                gene_name: MLPH
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 46 percent done.
MLXIP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.864254e-02	ci left: 6.424702e-01	ci right 6.612413e-01	k: 6519	n:10000
Cons ci ratio: 5.233511e-02	ci left: 3.498883e-01	ci right 3.687937e-01	k: 3593	n:10000
KS ci ratio: 3.155181e-02	ci left: 5.971464e-01	ci right 6.163914e-01	k: 6068	n:10000
MLXIP   10000 perm   2 sec   (6108 perm/sec)   p_kst 6.068000e-01   p_cons 3.593000e-01   p_joint 6.519000e-01

Outputting figure to mutsig2_images.part000000000106/MLXIP.3_2828_10000_0.6068_0.3593_0.6519.png
                gene_name: MLXIP
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 48 percent done.
MMAA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.994587e-02	ci left: 4.806559e-01	ci right 5.003496e-01	k: 4905	n:10000
Cons ci ratio: 2.066714e-02	ci left: 7.742826e-01	ci right 7.905526e-01	k: 7825	n:10000
KS ci ratio: 4.920140e-02	ci left: 3.786320e-01	ci right 3.978331e-01	k: 3882	n:10000
MMAA   10000 perm   2 sec   (6135 perm/sec)   p_kst 3.882000e-01   p_cons 7.825000e-01   p_joint 4.905000e-01

Outputting figure to mutsig2_images.part000000000106/MMAA.3_1281_10000_0.3882_0.7825_0.4905.png
                gene_name: MMAA
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 50 percent done.
MMP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.026571e-02	ci left: 2.882526e-01	ci right 3.062657e-01	k: 2972	n:10000
Cons ci ratio: 1.196672e-01	ci left: 9.107270e-02	ci right 1.027633e-01	k: 968	n:10000
KS ci ratio: 2.739085e-02	ci left: 6.625985e-01	ci right 6.811013e-01	k: 6719	n:10000
MMP1   10000 perm   2 sec   (6137 perm/sec)   p_kst 6.719000e-01   p_cons 9.680000e-02   p_joint 2.972000e-01

Joint ci ratio: 4.822823e-02	ci left: 2.422749e-01	ci right 2.542984e-01	k: 4965	n:20000
Cons ci ratio: 8.540206e-02	ci left: 9.121559e-02	ci right 9.940250e-02	k: 1905	n:20000
KS ci ratio: 1.959339e-02	ci left: 6.602186e-01	ci right 6.733329e-01	k: 13336	n:20000
MMP1   20000 perm   4 sec   (5499 perm/sec)   p_kst 6.668000e-01   p_cons 9.525000e-02   p_joint 2.482500e-01

Outputting figure to mutsig2_images.part000000000106/MMP1.3_1450_20000_0.6668_0.09525_0.24825.png
                gene_name: MMP1
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.095 
      ci_cons_bounds_left: 0.091 
     ci_cons_bounds_right: 0.099 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 52 percent done.
MMP13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.836432e-02	ci left: 5.008505e-01	ci right 5.205433e-01	k: 5107	n:10000
Cons ci ratio: 3.005765e-02	ci left: 6.201489e-01	ci right 6.391755e-01	k: 6297	n:10000
KS ci ratio: 5.186117e-02	ci left: 3.540633e-01	ci right 3.730162e-01	k: 3635	n:10000
MMP13   10000 perm   2 sec   (6341 perm/sec)   p_kst 3.635000e-01   p_cons 6.297000e-01   p_joint 5.107000e-01

Outputting figure to mutsig2_images.part000000000106/MMP13.3_1456_10000_0.3635_0.6297_0.5107.png
                gene_name: MMP13
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 54 percent done.
MMP19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.096528e-02	ci left: 2.834963e-01	ci right 3.014247e-01	k: 2924	n:10000
Cons ci ratio: 8.821285e-02	ci left: 1.575769e-01	ci right 1.722188e-01	k: 1648	n:10000
KS ci ratio: 5.962295e-02	ci left: 2.927127e-01	ci right 3.108030e-01	k: 3017	n:10000
MMP19   10000 perm   2 sec   (6296 perm/sec)   p_kst 3.017000e-01   p_cons 1.648000e-01   p_joint 2.924000e-01

Outputting figure to mutsig2_images.part000000000106/MMP19.3_1563_10000_0.3017_0.1648_0.2924.png
                gene_name: MMP19
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 56 percent done.
MMP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.167382e-02	ci left: 9.130677e-01	ci right 9.238870e-01	k: 9186	n:10000
KS ci ratio: 2.159350e-02	ci left: 7.587897e-01	ci right 7.754544e-01	k: 7672	n:10000
MMP2   10000 perm   2 sec   (6117 perm/sec)   p_kst 7.672000e-01   p_cons 9.186000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000106/MMP2.3_2042_10000_0.7672_0.9186_1.png
                gene_name: MMP2
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 58 percent done.
MMP28
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.351440e-01	ci left: 7.233299e-02	ci right 8.291462e-02	k: 775	n:10000
Cons ci ratio: 2.374251e-02	ci left: 7.227983e-01	ci right 7.402667e-01	k: 7316	n:10000
KS ci ratio: 3.155130e-01	ci left: 1.280183e-02	ci right 1.768651e-02	k: 151	n:10000
MMP28   10000 perm   2 sec   (6263 perm/sec)   p_kst 1.510000e-02   p_cons 7.316000e-01   p_joint 7.750000e-02

Joint ci ratio: 1.013426e-01	ci left: 6.606220e-02	ci right 7.316354e-02	k: 1391	n:20000
Cons ci ratio: 1.667124e-02	ci left: 7.281700e-01	ci right 7.404618e-01	k: 14687	n:20000
KS ci ratio: 2.285098e-01	ci left: 1.284199e-02	ci right 1.620133e-02	k: 289	n:20000
MMP28   20000 perm   4 sec   (5600 perm/sec)   p_kst 1.445000e-02   p_cons 7.343500e-01   p_joint 6.955000e-02

Joint ci ratio: 7.412713e-02	ci left: 8.209723e-02	ci right 8.845003e-02	k: 2557	n:30000
Cons ci ratio: 1.405627e-02	ci left: 7.165237e-01	ci right 7.267001e-01	k: 21649	n:30000
KS ci ratio: 1.917907e-01	ci left: 1.241520e-02	ci right 1.508019e-02	k: 411	n:30000
MMP28   30000 perm   6 sec   (5330 perm/sec)   p_kst 1.370000e-02   p_cons 7.216333e-01   p_joint 8.523333e-02

Joint ci ratio: 8.237838e-02	ci left: 5.136376e-02	ci right 5.580133e-02	k: 2142	n:40000
Cons ci ratio: 1.216580e-02	ci left: 7.174554e-01	ci right 7.262623e-01	k: 28875	n:40000
KS ci ratio: 1.633056e-01	ci left: 1.303941e-02	ci right 1.538189e-02	k: 567	n:40000
MMP28   40000 perm   8 sec   (5154 perm/sec)   p_kst 1.417500e-02   p_cons 7.218750e-01   p_joint 5.355000e-02

Joint ci ratio: 8.610659e-02	ci left: 3.808367e-02	ci right 4.153002e-02	k: 1989	n:50000
Cons ci ratio: 1.085205e-02	ci left: 7.190144e-01	ci right 7.268797e-01	k: 36148	n:50000
KS ci ratio: 1.440213e-01	ci left: 1.354762e-02	ci right 1.566929e-02	k: 729	n:50000
MMP28   50000 perm   10 sec   (5012 perm/sec)   p_kst 1.458000e-02   p_cons 7.229600e-01   p_joint 3.978000e-02

Joint ci ratio: 7.346687e-02	ci left: 4.363331e-02	ci right 4.697751e-02	k: 2717	n:60000
Cons ci ratio: 9.866399e-03	ci left: 7.209897e-01	ci right 7.281552e-01	k: 43475	n:60000
KS ci ratio: 1.322411e-01	ci left: 1.347809e-02	ci right 1.540263e-02	k: 865	n:60000
MMP28   60000 perm   12 sec   (4890 perm/sec)   p_kst 1.441667e-02   p_cons 7.245833e-01   p_joint 4.528333e-02

Joint ci ratio: 6.842501e-02	ci left: 4.325120e-02	ci right 4.632953e-02	k: 3134	n:70000
Cons ci ratio: 9.149831e-03	ci left: 7.205861e-01	ci right 7.272239e-01	k: 50674	n:70000
KS ci ratio: 1.246622e-01	ci left: 1.305960e-02	ci right 1.480960e-02	k: 974	n:70000
MMP28   70000 perm   15 sec   (4782 perm/sec)   p_kst 1.391429e-02   p_cons 7.239143e-01   p_joint 4.477143e-02

Joint ci ratio: 5.634498e-02	ci left: 5.544028e-02	ci right 5.866694e-02	k: 4563	n:80000
Cons ci ratio: 8.316755e-03	ci left: 7.321654e-01	ci right 7.382925e-01	k: 58819	n:80000
KS ci ratio: 1.169459e-01	ci left: 1.303944e-02	ci right 1.467110e-02	k: 1107	n:80000
MMP28   80000 perm   17 sec   (4684 perm/sec)   p_kst 1.383750e-02   p_cons 7.352375e-01   p_joint 5.703750e-02

Joint ci ratio: 5.855561e-02	ci left: 4.604270e-02	ci right 4.883101e-02	k: 4268	n:90000
Cons ci ratio: 7.835605e-03	ci left: 7.326165e-01	ci right 7.383906e-01	k: 66196	n:90000
KS ci ratio: 1.098785e-01	ci left: 1.317769e-02	ci right 1.472054e-02	k: 1254	n:90000
MMP28   90000 perm   20 sec   (4586 perm/sec)   p_kst 1.393333e-02   p_cons 7.355111e-01   p_joint 4.742222e-02

Joint ci ratio: 5.471628e-02	ci left: 4.748263e-02	ci right 5.016362e-02	k: 4881	n:100000
Cons ci ratio: 7.427608e-03	ci left: 7.330755e-01	ci right 7.385508e-01	k: 73582	n:100000
KS ci ratio: 1.045232e-01	ci left: 1.314453e-02	ci right 1.460387e-02	k: 1386	n:100000
MMP28   100000 perm   22 sec   (4500 perm/sec)   p_kst 1.386000e-02   p_cons 7.358200e-01   p_joint 4.881000e-02

Joint ci ratio: 5.420212e-02	ci left: 4.415927e-02	ci right 4.662841e-02	k: 4992	n:110000
Cons ci ratio: 7.079167e-03	ci left: 7.333570e-01	ci right 7.385760e-01	k: 80957	n:110000
KS ci ratio: 9.984834e-02	ci left: 1.312776e-02	ci right 1.451623e-02	k: 1519	n:110000
MMP28   110000 perm   25 sec   (4414 perm/sec)   p_kst 1.380909e-02   p_cons 7.359727e-01   p_joint 4.538182e-02

Outputting figure to mutsig2_images.part000000000106/MMP28.3_1608_110000_0.013809_0.73597_0.045382.png
                gene_name: MMP28
               theta_stop: 0.100 
                    nperm: 110000 
                     p_ks: 0.014 
        ci_ks_bounds_left: 0.013 
       ci_ks_bounds_right: 0.015 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.045 
     ci_joint_bounds_left: 0.044 
    ci_joint_bounds_right: 0.047 

Current progress: 60 percent done.
MNS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.885890e-02	ci left: 1.556131e-01	ci right 1.701838e-01	k: 1628	n:10000
Cons ci ratio: 7.743137e-02	ci left: 1.960405e-01	ci right 2.119323e-01	k: 2039	n:10000
KS ci ratio: 1.089551e-01	ci left: 1.083220e-01	ci right 1.209034e-01	k: 1145	n:10000
MNS1   10000 perm   2 sec   (6333 perm/sec)   p_kst 1.145000e-01   p_cons 2.039000e-01   p_joint 1.628000e-01

Joint ci ratio: 5.887205e-02	ci left: 1.760810e-01	ci right 1.868118e-01	k: 3628	n:20000
Cons ci ratio: 5.680686e-02	ci left: 1.868086e-01	ci right 1.977810e-01	k: 3845	n:20000
KS ci ratio: 7.761917e-02	ci left: 1.086930e-01	ci right 1.175199e-01	k: 2261	n:20000
MNS1   20000 perm   4 sec   (5630 perm/sec)   p_kst 1.130500e-01   p_cons 1.922500e-01   p_joint 1.814000e-01

Outputting figure to mutsig2_images.part000000000106/MNS1.3_1528_20000_0.11305_0.19225_0.1814.png
                gene_name: MNS1
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 62 percent done.
MOCS1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.265852e-02	ci left: 1.447212e-01	ci right 1.588823e-01	k: 1517	n:10000
KS ci ratio: 5.323349e-02	ci left: 3.421367e-01	ci right 3.609498e-01	k: 3515	n:10000
MOCS1   10000 perm   2 sec   (6613 perm/sec)   p_kst 3.515000e-01   p_cons 1.517000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000106/MOCS1.2_1321_10000_0.3515_0.1517_1.png
                gene_name: MOCS1
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 64 percent done.
MOGS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.697569e-02	ci left: 6.693457e-01	ci right 6.877502e-01	k: 6786	n:10000
KS ci ratio: 4.661919e-02	ci left: 4.044221e-01	ci right 4.238280e-01	k: 4141	n:10000
MOGS   10000 perm   2 sec   (6233 perm/sec)   p_kst 4.141000e-01   p_cons 6.786000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000106/MOGS.3_2530_10000_0.4141_0.6786_1.png
                gene_name: MOGS
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 66 percent done.
MLEC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.466463e-02	ci left: 3.302166e-01	ci right 3.488769e-01	k: 3395	n:10000
Cons ci ratio: 1.221246e-01	ci left: 8.766844e-02	ci right 9.916968e-02	k: 933	n:10000
KS ci ratio: 2.676375e-01	ci left: 1.818649e-02	ci right 2.389730e-02	k: 209	n:10000
MLEC   10000 perm   1 sec   (6848 perm/sec)   p_kst 2.090000e-02   p_cons 9.330000e-02   p_joint 3.395000e-01

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 8.617888e-02	ci left: 8.969559e-02	ci right 9.782296e-02	k: 1874	n:20000
KS ci ratio: 1.908840e-01	ci left: 1.867638e-02	ci right 2.266469e-02	k: 412	n:20000
MLEC   20000 perm   3 sec   (6038 perm/sec)   p_kst 2.060000e-02   p_cons 9.370000e-02   p_joint 1

Joint ci ratio: 1.595109e-01	ci left: 1.815744e-02	ci right 2.133653e-02	k: 591	n:30000
Cons ci ratio: 7.042741e-02	ci left: 9.029401e-02	ci right 9.691827e-02	k: 2807	n:30000
KS ci ratio: 1.581536e-01	ci left: 1.847776e-02	ci right 2.168280e-02	k: 601	n:30000
MLEC   30000 perm   5 sec   (5734 perm/sec)   p_kst 2.003333e-02   p_cons 9.356667e-02   p_joint 1.970000e-02

Joint ci ratio: 3.601461e-02	ci left: 2.243679e-01	ci right 2.326216e-01	k: 9139	n:40000
Cons ci ratio: 6.127239e-02	ci left: 8.997369e-02	ci right 9.568558e-02	k: 3712	n:40000
KS ci ratio: 1.360745e-01	ci left: 1.894039e-02	ci right 2.172985e-02	k: 812	n:40000
MLEC   40000 perm   7 sec   (5536 perm/sec)   p_kst 2.030000e-02   p_cons 9.280000e-02   p_joint 2.284750e-01

Joint ci ratio: 1.549391e-01	ci left: 1.165993e-02	ci right 1.363725e-02	k: 631	n:50000
Cons ci ratio: 5.494911e-02	ci left: 8.983589e-02	ci right 9.493155e-02	k: 4618	n:50000
KS ci ratio: 1.227142e-01	ci left: 1.877140e-02	ci right 2.124477e-02	k: 999	n:50000
MLEC   50000 perm   9 sec   (5375 perm/sec)   p_kst 1.998000e-02   p_cons 9.236000e-02   p_joint 1.262000e-02

Joint ci ratio: 1.417618e-01	ci left: 1.169064e-02	ci right 1.349029e-02	k: 754	n:60000
Cons ci ratio: 4.978536e-02	ci left: 9.131371e-02	ci right 9.599235e-02	k: 5618	n:60000
KS ci ratio: 1.118798e-01	ci left: 1.892713e-02	ci right 2.118629e-02	k: 1202	n:60000
MLEC   60000 perm   11 sec   (5234 perm/sec)   p_kst 2.003333e-02   p_cons 9.363333e-02   p_joint 1.256667e-02

Joint ci ratio: 1.329246e-01	ci left: 1.145516e-02	ci right 1.309993e-02	k: 858	n:70000
Cons ci ratio: 4.612145e-02	ci left: 9.138132e-02	ci right 9.570959e-02	k: 6547	n:70000
KS ci ratio: 1.038263e-01	ci left: 1.891999e-02	ci right 2.100579e-02	k: 1396	n:70000
MLEC   70000 perm   14 sec   (5109 perm/sec)   p_kst 1.994286e-02   p_cons 9.352857e-02   p_joint 1.225714e-02

Joint ci ratio: 1.253594e-01	ci left: 1.131752e-02	ci right 1.284317e-02	k: 965	n:80000
Cons ci ratio: 4.313770e-02	ci left: 9.154063e-02	ci right 9.558890e-02	k: 7484	n:80000
KS ci ratio: 9.789213e-02	ci left: 1.868722e-02	ci right 2.062284e-02	k: 1571	n:80000
MLEC   80000 perm   16 sec   (4997 perm/sec)   p_kst 1.963750e-02   p_cons 9.355000e-02   p_joint 1.206250e-02

Joint ci ratio: 1.181213e-01	ci left: 1.137434e-02	ci right 1.281292e-02	k: 1087	n:90000
Cons ci ratio: 4.079535e-02	ci left: 9.114315e-02	ci right 9.494979e-02	k: 8373	n:90000
KS ci ratio: 9.236026e-02	ci left: 1.871517e-02	ci right 2.053820e-02	k: 1765	n:90000
MLEC   90000 perm   18 sec   (4892 perm/sec)   p_kst 1.961111e-02   p_cons 9.303333e-02   p_joint 1.207778e-02

Joint ci ratio: 1.129084e-01	ci left: 1.123710e-02	ci right 1.259143e-02	k: 1190	n:100000
Cons ci ratio: 3.859779e-02	ci left: 9.169247e-02	ci right 9.531114e-02	k: 9349	n:100000
KS ci ratio: 8.785439e-02	ci left: 1.866173e-02	ci right 2.038630e-02	k: 1951	n:100000
MLEC   100000 perm   21 sec   (4793 perm/sec)   p_kst 1.951000e-02   p_cons 9.349000e-02   p_joint 1.190000e-02

Joint ci ratio: 1.076998e-01	ci left: 1.125869e-02	ci right 1.254905e-02	k: 1308	n:110000
Cons ci ratio: 3.672480e-02	ci left: 9.212834e-02	ci right 9.558402e-02	k: 10323	n:110000
KS ci ratio: 8.376989e-02	ci left: 1.869991e-02	ci right 2.034374e-02	k: 2146	n:110000
MLEC   110000 perm   23 sec   (4696 perm/sec)   p_kst 1.950909e-02   p_cons 9.384545e-02   p_joint 1.189091e-02

Joint ci ratio: 1.032245e-01	ci left: 1.126164e-02	ci right 1.249545e-02	k: 1424	n:120000
Cons ci ratio: 3.518296e-02	ci left: 9.209822e-02	ci right 9.540478e-02	k: 11249	n:120000
KS ci ratio: 7.992875e-02	ci left: 1.886400e-02	ci right 2.044267e-02	k: 2357	n:120000
MLEC   120000 perm   26 sec   (4603 perm/sec)   p_kst 1.964167e-02   p_cons 9.374167e-02   p_joint 1.186667e-02

Joint ci ratio: 9.913432e-02	ci left: 1.129509e-02	ci right 1.248067e-02	k: 1544	n:130000
Cons ci ratio: 3.379582e-02	ci left: 9.219747e-02	ci right 9.537452e-02	k: 12191	n:130000
KS ci ratio: 7.692373e-02	ci left: 1.883070e-02	ci right 2.034468e-02	k: 2545	n:130000
MLEC   130000 perm   29 sec   (4518 perm/sec)   p_kst 1.957692e-02   p_cons 9.377692e-02   p_joint 1.187692e-02

Outputting figure to mutsig2_images.part000000000106/MLEC.2_899_130000_0.019577_0.093777_0.011877.png
                gene_name: MLEC
               theta_stop: 0.099 
                    nperm: 130000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.020 
                   p_cons: 0.094 
      ci_cons_bounds_left: 0.092 
     ci_cons_bounds_right: 0.095 
                  p_joint: 0.012 
     ci_joint_bounds_left: 0.011 
    ci_joint_bounds_right: 0.012 

Current progress: 68 percent done.
MLF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.742002e-02	ci left: 3.086781e-01	ci right 3.270281e-01	k: 3178	n:10000
Cons ci ratio: 5.761920e-02	ci left: 3.071901e-01	ci right 3.255170e-01	k: 3163	n:10000
KS ci ratio: 5.027449e-02	ci left: 3.684831e-01	ci right 3.875880e-01	k: 3780	n:10000
MLF1   10000 perm   1 sec   (6877 perm/sec)   p_kst 3.780000e-01   p_cons 3.163000e-01   p_joint 3.178000e-01

Outputting figure to mutsig2_images.part000000000106/MLF1.2_835_10000_0.378_0.3163_0.3178.png
                gene_name: MLF1
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 70 percent done.
MLH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.266795e-02	ci left: 7.407845e-01	ci right 7.578701e-01	k: 7494	n:10000
Cons ci ratio: 2.020515e-02	ci left: 7.819844e-01	ci right 7.980463e-01	k: 7901	n:10000
KS ci ratio: 4.878967e-02	ci left: 3.826132e-01	ci right 4.018496e-01	k: 3922	n:10000
MLH1   10000 perm   2 sec   (6030 perm/sec)   p_kst 3.922000e-01   p_cons 7.901000e-01   p_joint 7.494000e-01

Outputting figure to mutsig2_images.part000000000106/MLH1.2_2347_10000_0.3922_0.7901_0.7494.png
                gene_name: MLH1
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 72 percent done.
MLLT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.205586e-03	ci left: 9.637304e-01	ci right 9.707940e-01	k: 9674	n:10000
Cons ci ratio: 9.675168e-02	ci left: 1.341362e-01	ci right 1.478736e-01	k: 1409	n:10000
KS ci ratio: 2.893970e-02	ci left: 6.377427e-01	ci right 6.565715e-01	k: 6472	n:10000
MLLT1   10000 perm   1 sec   (6766 perm/sec)   p_kst 6.472000e-01   p_cons 1.409000e-01   p_joint 9.674000e-01

Outputting figure to mutsig2_images.part000000000106/MLLT1.2_1728_10000_0.6472_0.1409_0.9674.png
                gene_name: MLLT1
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 74 percent done.
MLNR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.518969e-03	ci left: 9.976522e-01	ci right 9.992344e-01	k: 9986	n:10000
KS ci ratio: 1.785521e-02	ci left: 8.206616e-01	ci right 8.355467e-01	k: 8282	n:10000
MLNR   10000 perm   1 sec   (6734 perm/sec)   p_kst 8.282000e-01   p_cons 9.986000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000106/MLNR.2_1245_10000_0.8282_0.9986_1.png
                gene_name: MLNR
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
MLXIPL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.862726e-02	ci left: 2.374850e-01	ci right 2.544633e-01	k: 2459	n:10000
KS ci ratio: 1.090790e-02	ci left: 9.229644e-01	ci right 9.331845e-01	k: 9282	n:10000
MLXIPL   10000 perm   2 sec   (6065 perm/sec)   p_kst 9.282000e-01   p_cons 2.459000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000106/MLXIPL.2_2627_10000_0.9282_0.2459_1.png
                gene_name: MLXIPL
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
MMEL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.881196e-02	ci left: 4.950504e-01	ci right 5.147467e-01	k: 5049	n:10000
KS ci ratio: 2.525240e-02	ci left: 6.976675e-01	ci right 7.156120e-01	k: 7067	n:10000
MMEL1   10000 perm   2 sec   (6188 perm/sec)   p_kst 7.067000e-01   p_cons 5.049000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000106/MMEL1.2_2432_10000_0.7067_0.5049_1.png
                gene_name: MMEL1
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.51 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
MMP11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.005031e-02	ci left: 1.520792e-01	ci right 1.665198e-01	k: 1592	n:10000
Cons ci ratio: 3.501136e-02	ci left: 5.463971e-01	ci right 5.659702e-01	k: 5562	n:10000
KS ci ratio: 1.584068e-01	ci left: 5.311294e-02	ci right 6.234681e-02	k: 576	n:10000
MMP11   10000 perm   2 sec   (6511 perm/sec)   p_kst 5.760000e-02   p_cons 5.562000e-01   p_joint 1.592000e-01

Joint ci ratio: 8.088140e-02	ci left: 1.008332e-01	ci right 1.093820e-01	k: 2101	n:20000
Cons ci ratio: 2.565613e-02	ci left: 5.316109e-01	ci right 5.454779e-01	k: 10771	n:20000
KS ci ratio: 1.126881e-01	ci left: 5.382647e-02	ci right 6.030306e-02	k: 1140	n:20000
MMP11   20000 perm   3 sec   (5763 perm/sec)   p_kst 5.700000e-02   p_cons 5.385500e-01   p_joint 1.050500e-01

Joint ci ratio: 6.216379e-02	ci left: 1.133834e-01	ci right 1.206909e-01	k: 3510	n:30000
Cons ci ratio: 2.102530e-02	ci left: 5.310707e-01	ci right 5.423889e-01	k: 16102	n:30000
KS ci ratio: 9.213864e-02	ci left: 5.427240e-02	ci right 5.954716e-02	k: 1706	n:30000
MMP11   30000 perm   5 sec   (5479 perm/sec)   p_kst 5.686667e-02   p_cons 5.367333e-01   p_joint 1.170000e-01

Outputting figure to mutsig2_images.part000000000106/MMP11.2_1499_30000_0.056867_0.53673_0.117.png
                gene_name: MMP11
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.057 
        ci_ks_bounds_left: 0.054 
       ci_ks_bounds_right: 0.060 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 82 percent done.
MMP14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.194382e-02	ci left: 7.529207e-01	ci right 7.697268e-01	k: 7614	n:10000
Cons ci ratio: 7.359516e-02	ci left: 2.128012e-01	ci right 2.291616e-01	k: 2209	n:10000
KS ci ratio: 3.198321e-02	ci left: 5.906213e-01	ci right 6.099202e-01	k: 6003	n:10000
MMP14   10000 perm   2 sec   (6416 perm/sec)   p_kst 6.003000e-01   p_cons 2.209000e-01   p_joint 7.614000e-01

Outputting figure to mutsig2_images.part000000000106/MMP14.2_1789_10000_0.6003_0.2209_0.7614.png
                gene_name: MMP14
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 84 percent done.
MMP17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.275060e-02	ci left: 2.167479e-01	ci right 2.332127e-01	k: 2249	n:10000
Cons ci ratio: 3.052986e-02	ci left: 6.128138e-01	ci right 6.319149e-01	k: 6224	n:10000
KS ci ratio: 1.324787e-01	ci left: 7.514340e-02	ci right 8.590246e-02	k: 804	n:10000
MMP17   10000 perm   2 sec   (6123 perm/sec)   p_kst 8.040000e-02   p_cons 6.224000e-01   p_joint 2.249000e-01

Joint ci ratio: 6.904321e-02	ci left: 1.339869e-01	ci right 1.436184e-01	k: 2775	n:20000
Cons ci ratio: 2.137591e-02	ci left: 6.203048e-01	ci right 6.337582e-01	k: 12541	n:20000
KS ci ratio: 9.470588e-02	ci left: 7.515134e-02	ci right 8.267162e-02	k: 1577	n:20000
MMP17   20000 perm   4 sec   (5497 perm/sec)   p_kst 7.885000e-02   p_cons 6.270500e-01   p_joint 1.387500e-01

Outputting figure to mutsig2_images.part000000000106/MMP17.2_1852_20000_0.07885_0.62705_0.13875.png
                gene_name: MMP17
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.079 
        ci_ks_bounds_left: 0.075 
       ci_ks_bounds_right: 0.083 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 86 percent done.
MMP26
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.584265e-03	ci left: 9.601611e-01	ci right 9.675655e-01	k: 9640	n:10000
Cons ci ratio: 2.798921e-02	ci left: 6.529346e-01	ci right 6.715708e-01	k: 6623	n:10000
KS ci ratio: 2.667321e-02	ci left: 6.742815e-01	ci right 6.926115e-01	k: 6835	n:10000
MMP26   10000 perm   1 sec   (6848 perm/sec)   p_kst 6.835000e-01   p_cons 6.623000e-01   p_joint 9.640000e-01

Outputting figure to mutsig2_images.part000000000106/MMP26.2_810_10000_0.6835_0.6623_0.964.png
                gene_name: MMP26
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 88 percent done.
MNX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.407510e-02	ci left: 7.172444e-01	ci right 7.348238e-01	k: 7261	n:10000
Cons ci ratio: 1.728151e-02	ci left: 8.299179e-01	ci right 8.444851e-01	k: 8373	n:10000
KS ci ratio: 1.023572e-01	ci left: 1.213154e-01	ci right 1.345022e-01	k: 1278	n:10000
MNX1   10000 perm   2 sec   (6650 perm/sec)   p_kst 1.278000e-01   p_cons 8.373000e-01   p_joint 7.261000e-01

Joint ci ratio: 1.266272e-02	ci left: 8.220396e-01	ci right 8.325651e-01	k: 16547	n:20000
Cons ci ratio: 1.223497e-02	ci left: 8.317564e-01	ci right 8.420454e-01	k: 16739	n:20000
KS ci ratio: 7.270505e-02	ci left: 1.222671e-01	ci right 1.315416e-01	k: 2537	n:20000
MNX1   20000 perm   3 sec   (5898 perm/sec)   p_kst 1.268500e-01   p_cons 8.369500e-01   p_joint 8.273500e-01

Outputting figure to mutsig2_images.part000000000106/MNX1.2_1277_20000_0.12685_0.83695_0.82735.png
                gene_name: MNX1
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 90 percent done.
MOBKL2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.076856e-01	ci left: 1.106648e-01	ci right 1.233592e-01	k: 1169	n:10000
Cons ci ratio: 2.264156e-01	ci left: 2.579881e-02	ci right 3.247924e-02	k: 290	n:10000
KS ci ratio: 4.484940e-02	ci left: 4.232593e-01	ci right 4.427798e-01	k: 4330	n:10000
MOBKL2B   10000 perm   1 sec   (7021 perm/sec)   p_kst 4.330000e-01   p_cons 2.900000e-02   p_joint 1.169000e-01

Joint ci ratio: 7.114030e-02	ci left: 1.270914e-01	ci right 1.365159e-01	k: 2635	n:20000
Cons ci ratio: 1.636116e-01	ci left: 2.561344e-02	ci right 3.022518e-02	k: 557	n:20000
KS ci ratio: 3.173551e-02	ci left: 4.258187e-01	ci right 4.396008e-01	k: 8654	n:20000
MOBKL2B   20000 perm   3 sec   (6171 perm/sec)   p_kst 4.327000e-01   p_cons 2.785000e-02   p_joint 1.317500e-01

Joint ci ratio: 2.401599e-02	ci left: 4.646718e-01	ci right 4.760006e-01	k: 14110	n:30000
Cons ci ratio: 1.336716e-01	ci left: 2.600110e-02	ci right 2.975775e-02	k: 835	n:30000
KS ci ratio: 2.578992e-02	ci left: 4.294132e-01	ci right 4.406660e-01	k: 13051	n:30000
MOBKL2B   30000 perm   5 sec   (5852 perm/sec)   p_kst 4.350333e-01   p_cons 2.783333e-02   p_joint 4.703333e-01

Joint ci ratio: 1.995327e-02	ci left: 4.861392e-01	ci right 4.959621e-01	k: 19642	n:40000
Cons ci ratio: 1.173801e-01	ci left: 2.553066e-02	ci right 2.873849e-02	k: 1084	n:40000
KS ci ratio: 2.229912e-02	ci left: 4.309579e-01	ci right 4.407014e-01	k: 17433	n:40000
MOBKL2B   40000 perm   7 sec   (5649 perm/sec)   p_kst 4.358250e-01   p_cons 2.710000e-02   p_joint 4.910500e-01

Joint ci ratio: 2.241456e-02	ci left: 3.752636e-01	ci right 3.837904e-01	k: 18976	n:50000
Cons ci ratio: 1.048393e-01	ci left: 2.577221e-02	ci right 2.864304e-02	k: 1359	n:50000
KS ci ratio: 1.992830e-02	ci left: 4.318870e-01	ci right 4.406004e-01	k: 21812	n:50000
MOBKL2B   50000 perm   9 sec   (5467 perm/sec)   p_kst 4.362400e-01   p_cons 2.718000e-02   p_joint 3.795200e-01

Joint ci ratio: 2.139735e-02	ci left: 3.548609e-01	ci right 3.625528e-01	k: 21522	n:60000
Cons ci ratio: 9.582572e-02	ci left: 2.583161e-02	ci right 2.844773e-02	k: 1627	n:60000
KS ci ratio: 1.813387e-02	ci left: 4.338417e-01	ci right 4.417976e-01	k: 26269	n:60000
MOBKL2B   60000 perm   11 sec   (5311 perm/sec)   p_kst 4.378167e-01   p_cons 2.711667e-02   p_joint 3.587000e-01

Outputting figure to mutsig2_images.part000000000106/MOBKL2B.2_663_60000_0.43782_0.027117_0.3587.png
                gene_name: MOBKL2B
               theta_stop: 0.096 
                    nperm: 60000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.027 
      ci_cons_bounds_left: 0.026 
     ci_cons_bounds_right: 0.028 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 92 percent done.
MOGAT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.081832e-02	ci left: 2.844871e-01	ci right 3.024334e-01	k: 2934	n:10000
Cons ci ratio: 2.515839e-01	ci left: 2.071417e-02	ci right 2.676765e-02	k: 236	n:10000
KS ci ratio: 7.254263e-02	ci left: 2.177347e-01	ci right 2.342252e-01	k: 2259	n:10000
MOGAT1   10000 perm   1 sec   (7063 perm/sec)   p_kst 2.259000e-01   p_cons 2.360000e-02   p_joint 2.934000e-01

Joint ci ratio: 8.224334e-02	ci left: 9.778957e-02	ci right 1.062265e-01	k: 2039	n:20000
Cons ci ratio: 1.812584e-01	ci left: 2.077592e-02	ci right 2.496439e-02	k: 456	n:20000
KS ci ratio: 5.125929e-02	ci left: 2.204169e-01	ci right 2.320628e-01	k: 4524	n:20000
MOGAT1   20000 perm   3 sec   (6224 perm/sec)   p_kst 2.262000e-01   p_cons 2.280000e-02   p_joint 1.019500e-01

Joint ci ratio: 1.201466e-01	ci left: 3.220433e-02	ci right 3.635316e-02	k: 1027	n:30000
Cons ci ratio: 1.501990e-01	ci left: 2.053041e-02	ci right 2.389633e-02	k: 665	n:30000
KS ci ratio: 4.181934e-02	ci left: 2.217736e-01	ci right 2.312795e-01	k: 6795	n:30000
MOGAT1   30000 perm   5 sec   (5893 perm/sec)   p_kst 2.265000e-01   p_cons 2.216667e-02   p_joint 3.423333e-02

Joint ci ratio: 1.040373e-01	ci left: 3.248908e-02	ci right 3.607895e-02	k: 1370	n:40000
Cons ci ratio: 1.290402e-01	ci left: 2.109311e-02	ci right 2.402677e-02	k: 901	n:40000
KS ci ratio: 3.607088e-02	ci left: 2.238214e-01	ci right 2.320681e-01	k: 9117	n:40000
MOGAT1   40000 perm   7 sec   (5680 perm/sec)   p_kst 2.279250e-01   p_cons 2.252500e-02   p_joint 3.425000e-02

Joint ci ratio: 9.369993e-02	ci left: 3.223311e-02	ci right 3.542131e-02	k: 1690	n:50000
Cons ci ratio: 1.162908e-01	ci left: 2.092638e-02	ci right 2.352950e-02	k: 1110	n:50000
KS ci ratio: 3.222528e-02	ci left: 2.246665e-01	ci right 2.320450e-01	k: 11417	n:50000
MOGAT1   50000 perm   9 sec   (5508 perm/sec)   p_kst 2.283400e-01   p_cons 2.220000e-02   p_joint 3.380000e-02

Joint ci ratio: 6.169987e-02	ci left: 6.108519e-02	ci right 6.499054e-02	k: 3781	n:60000
Cons ci ratio: 1.067415e-01	ci left: 2.080868e-02	ci right 2.317121e-02	k: 1318	n:60000
KS ci ratio: 2.932823e-02	ci left: 2.260572e-01	ci right 2.328023e-01	k: 13765	n:60000
MOGAT1   60000 perm   11 sec   (5360 perm/sec)   p_kst 2.294167e-01   p_cons 2.196667e-02   p_joint 6.301667e-02

Joint ci ratio: 3.647301e-02	ci left: 1.390534e-01	ci right 1.442335e-01	k: 9914	n:70000
Cons ci ratio: 9.954803e-02	ci left: 2.059155e-02	ci right 2.276264e-02	k: 1516	n:70000
KS ci ratio: 2.717720e-02	ci left: 2.259909e-01	ci right 2.322316e-01	k: 16037	n:70000
MOGAT1   70000 perm   13 sec   (5229 perm/sec)   p_kst 2.291000e-01   p_cons 2.165714e-02   p_joint 1.416286e-01

Outputting figure to mutsig2_images.part000000000106/MOGAT1.2_1032_70000_0.2291_0.021657_0.14163.png
                gene_name: MOGAT1
               theta_stop: 0.100 
                    nperm: 70000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.022 
      ci_cons_bounds_left: 0.021 
     ci_cons_bounds_right: 0.023 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.14 

Current progress: 94 percent done.
MOGAT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.075815e-01	ci left: 1.108601e-01	ci right 1.235638e-01	k: 1171	n:10000
Cons ci ratio: 1.156770e-01	ci left: 9.701134e-02	ci right 1.090210e-01	k: 1029	n:10000
KS ci ratio: 3.814236e-02	ci left: 5.037510e-01	ci right 5.234410e-01	k: 5136	n:10000
MOGAT3   10000 perm   1 sec   (6786 perm/sec)   p_kst 5.136000e-01   p_cons 1.029000e-01   p_joint 1.171000e-01

Joint ci ratio: 7.930929e-02	ci left: 1.045165e-01	ci right 1.131975e-01	k: 2176	n:20000
Cons ci ratio: 8.088140e-02	ci left: 1.008332e-01	ci right 1.093820e-01	k: 2101	n:20000
KS ci ratio: 2.685954e-02	ci left: 5.087470e-01	ci right 5.226484e-01	k: 10314	n:20000
MOGAT3   20000 perm   3 sec   (6007 perm/sec)   p_kst 5.157000e-01   p_cons 1.050500e-01   p_joint 1.088000e-01

Outputting figure to mutsig2_images.part000000000106/MOGAT3.2_1054_20000_0.5157_0.10505_0.1088.png
                gene_name: MOGAT3
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 96 percent done.
MON1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.560629e-02	ci left: 4.150847e-01	ci right 4.345591e-01	k: 4248	n:10000
Cons ci ratio: 1.134190e-01	ci left: 1.006167e-01	ci right 1.128135e-01	k: 1066	n:10000
KS ci ratio: 2.089762e-02	ci left: 7.704332e-01	ci right 7.868042e-01	k: 7787	n:10000
MON1A   10000 perm   2 sec   (6495 perm/sec)   p_kst 7.787000e-01   p_cons 1.066000e-01   p_joint 4.248000e-01

Joint ci ratio: 2.346771e-02	ci left: 5.755788e-01	ci right 5.892973e-01	k: 11649	n:20000
Cons ci ratio: 8.116213e-02	ci left: 1.001949e-01	ci right 1.087205e-01	k: 2088	n:20000
KS ci ratio: 1.493955e-02	ci left: 7.690471e-01	ci right 7.806729e-01	k: 15498	n:20000
MON1A   20000 perm   4 sec   (5699 perm/sec)   p_kst 7.749000e-01   p_cons 1.044000e-01   p_joint 5.824500e-01

Outputting figure to mutsig2_images.part000000000106/MON1A.2_1983_20000_0.7749_0.1044_0.58245.png
                gene_name: MON1A
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.59 

Current progress: 98 percent done.
MON1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.720332e-03	ci left: 9.832843e-01	ci right 9.880266e-01	k: 9858	n:10000
Cons ci ratio: 1.388292e-02	ci left: 8.822699e-01	ci right 8.947028e-01	k: 8886	n:10000
KS ci ratio: 1.263811e-02	ci left: 9.000087e-01	ci right 9.115537e-01	k: 9059	n:10000
MON1B   10000 perm   2 sec   (6418 perm/sec)   p_kst 9.059000e-01   p_cons 8.886000e-01   p_joint 9.858000e-01

Outputting figure to mutsig2_images.part000000000106/MON1B.2_1664_10000_0.9059_0.8886_0.9858.png
                gene_name: MON1B
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000106
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 106 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1710>
Subject: Job 8004275: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1710>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000107> was used as the working directory.
Started at Sun Nov 11 15:08:36 2012
Results reported at Sun Nov 11 15:16:49 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000107.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000107.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 107  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000107.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    532.53 sec.
    Max Memory :      4691 MB
    Max Swap   :      7045 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
107
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 107
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 107: processing genes 9591 - 9680
Calculating significance of each gene.
Using projection method.
9591	MORC2	9.450438e-01
9592	MORC3	7.783132e-01
9593	MORC4	5.746984e-01
9594	MORF4	1.339337e-02
9595	MORF4L1	5.157625e-01
9596	MORF4L2	2.628718e-02
9597	MORN1	7.147312e-01
9598	MORN3	1
9599	MORN4	5.067015e-01
9600	MORN5	1
9601	MOS	4.715412e-01
9602	MOSC1	3.964888e-02
9603	MOSC2	3.094546e-01
9604	MOSPD1	1
9605	MOSPD2	6.341095e-01
9606	MOSPD3	3.296270e-01
9607	MOV10	9.559434e-01
9608	MOV10L1	1.639577e-01
9609	MOXD1	1
9610	MPDU1	1
9611	MPDZ	7.711115e-01
9612	MPEG1	9.249705e-01
9613	MPG	1
9614	MPHOSPH10	2.088984e-01
9615	MPHOSPH6	2.707624e-01
9616	MPHOSPH8	7.753260e-01
9617	MPHOSPH9	1
9618	MPI	6.983745e-01
9619	MPL	6.716033e-01
9620	MPND	6.065065e-01
9621	MPO	1
9622	MPP1	7.403153e-01
9623	MPP2	8.913952e-01
9624	MPP3	1
9625	MPP4	1.573751e-01
9626	MPP5	1
9627	MPP6	8.746473e-01
9628	MPP7	1
9629	MPPE1	1
9630	MPPED1	1
9631	MPPED2	1.290739e-01
9632	MPRIP	9.926601e-01
9633	MPST	1
9634	MPV17	5.458274e-01
9635	MPV17L	3.486405e-01
9636	MPV17L2	1
9637	MPZ	1
9638	MPZL1	1
9639	MPZL2	1
9640	MPZL3	5.025203e-01
9641	MR1	1
9642	MRAP	3.117297e-01
9643	MRAP2	4.073519e-01
9644	MRAS	1
9645	MRC2	7.422780e-01
9646	MRE11A	9.493690e-01
9647	MREG	1
9648	MRFAP1	1
9649	MRFAP1L1	1
9650	MRGPRD	1
9651	MRGPRE	4.852333e-02
9652	MRGPRF	3.237347e-01
9653	MRGPRX1	1.670338e-03
9654	MRGPRX2	7.413987e-01
9655	MRGPRX3	5.920248e-01
9656	MRGPRX4	1
9657	MRI1	6.477626e-01
9658	MRM1	1
9659	MRO	1
9660	MRP63	9.770737e-02
9661	MRPL1	4.932688e-02
9662	MRPL10	4.980195e-01
9663	MRPL11	6.067529e-01
9664	MRPL12	1
9665	MRPL13	1
9666	MRPL14	1
9667	MRPL15	3.503349e-01
9668	MRPL16	4.821288e-01
9669	MRPL17	1
9670	MRPL18	3.484618e-01
9671	MRPL19	5.314127e-01
9672	MRPL2	1
9673	MRPL20	1
9674	MRPL21	5.020698e-01
9675	MRPL22	1
9676	MRPL23	4.300951e-01
9677	MRPL24	1
9678	MRPL27	1
9679	MRPL28	6.174664e-01
9680	MRPL3	1.853310e-01
Done

Running MutSig 2:
Scatter job 107: processing genes 9591 - 9680
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
MOV10L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.079470e-01	ci left: 1.101767e-01	ci right 1.228477e-01	k: 1164	n:10000
Cons ci ratio: 5.772592e-02	ci left: 3.063966e-01	ci right 3.247110e-01	k: 3155	n:10000
KS ci ratio: 1.096042e-01	ci left: 1.071510e-01	ci right 1.196752e-01	k: 1133	n:10000
MOV10L1   10000 perm   2 sec   (4417 perm/sec)   p_kst 1.133000e-01   p_cons 3.155000e-01   p_joint 1.164000e-01

Joint ci ratio: 6.086913e-02	ci left: 1.664965e-01	ci right 1.769991e-01	k: 3434	n:20000
Cons ci ratio: 4.132948e-02	ci left: 3.037921e-01	ci right 3.166631e-01	k: 6204	n:20000
KS ci ratio: 7.848243e-02	ci left: 1.065308e-01	ci right 1.152827e-01	k: 2217	n:20000
MOV10L1   20000 perm   7 sec   (2985 perm/sec)   p_kst 1.108500e-01   p_cons 3.102000e-01   p_joint 1.717000e-01

Outputting figure to mutsig2_images.part000000000107/MOV10L1.7_3811_20000_0.11085_0.3102_0.1717.png
                gene_name: MOV10L1
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 3 percent done.
MRC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.411746e-02	ci left: 7.165376e-01	ci right 7.341309e-01	k: 7254	n:10000
Cons ci ratio: 1.965582e-02	ci left: 7.911103e-01	ci right 8.069151e-01	k: 7991	n:10000
KS ci ratio: 4.301616e-02	ci left: 4.438072e-01	ci right 4.634199e-01	k: 4536	n:10000
MRC2   10000 perm   2 sec   (4469 perm/sec)   p_kst 4.536000e-01   p_cons 7.991000e-01   p_joint 7.254000e-01

Outputting figure to mutsig2_images.part000000000107/MRC2.7_4560_10000_0.4536_0.7991_0.7254.png
                gene_name: MRC2
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 6 percent done.
MPDZ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.777008e-02	ci left: 5.086527e-01	ci right 5.283365e-01	k: 5185	n:10000
KS ci ratio: 2.334987e-02	ci left: 7.293641e-01	ci right 7.466970e-01	k: 7381	n:10000
MPDZ   10000 perm   2 sec   (4137 perm/sec)   p_kst 7.381000e-01   p_cons 5.185000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000107/MPDZ.6_6306_10000_0.7381_0.5185_1.png
                gene_name: MPDZ
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 9 percent done.
MPEG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.518912e-02	ci left: 8.627401e-01	ci right 8.760439e-01	k: 8695	n:10000
Cons ci ratio: 3.817613e-03	ci left: 9.886188e-01	ci right 9.924873e-01	k: 9907	n:10000
KS ci ratio: 2.937825e-02	ci left: 6.308041e-01	ci right 6.497141e-01	k: 6403	n:10000
MPEG1   10000 perm   2 sec   (5289 perm/sec)   p_kst 6.403000e-01   p_cons 9.907000e-01   p_joint 8.695000e-01

Outputting figure to mutsig2_images.part000000000107/MPEG1.6_2155_10000_0.6403_0.9907_0.8695.png
                gene_name: MPEG1
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.88 

Current progress: 12 percent done.
MRGPRX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.886633e-02	ci left: 4.943505e-01	ci right 5.140471e-01	k: 5042	n:10000
Cons ci ratio: 5.128351e-02	ci left: 3.592335e-01	ci right 3.782430e-01	k: 3687	n:10000
KS ci ratio: 4.961818e-02	ci left: 3.746515e-01	ci right 3.938160e-01	k: 3842	n:10000
MRGPRX1   10000 perm   2 sec   (5718 perm/sec)   p_kst 3.842000e-01   p_cons 3.687000e-01   p_joint 5.042000e-01

Outputting figure to mutsig2_images.part000000000107/MRGPRX1.6_973_10000_0.3842_0.3687_0.5042.png
                gene_name: MRGPRX1
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 15 percent done.
MPHOSPH10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.499077e-02	ci left: 7.020050e-01	ci right 7.198720e-01	k: 7110	n:10000
Cons ci ratio: 5.779280e-02	ci left: 3.059006e-01	ci right 3.242072e-01	k: 3150	n:10000
KS ci ratio: 1.339460e-02	ci left: 8.893387e-01	ci right 9.014299e-01	k: 8955	n:10000
MPHOSPH10   10000 perm   2 sec   (5435 perm/sec)   p_kst 8.955000e-01   p_cons 3.150000e-01   p_joint 7.110000e-01

Outputting figure to mutsig2_images.part000000000107/MPHOSPH10.5_2090_10000_0.8955_0.315_0.711.png
                gene_name: MPHOSPH10
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 18 percent done.
MPHOSPH9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.986605e-02	ci left: 4.816553e-01	ci right 5.013497e-01	k: 4915	n:10000
Cons ci ratio: 4.397447e-02	ci left: 4.329326e-01	ci right 4.525008e-01	k: 4427	n:10000
KS ci ratio: 5.790008e-02	ci left: 3.051071e-01	ci right 3.234012e-01	k: 3142	n:10000
MPHOSPH9   10000 perm   2 sec   (5228 perm/sec)   p_kst 3.142000e-01   p_cons 4.427000e-01   p_joint 4.915000e-01

Outputting figure to mutsig2_images.part000000000107/MPHOSPH9.5_3176_10000_0.3142_0.4427_0.4915.png
                gene_name: MPHOSPH9
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 21 percent done.
MPP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.757927e-02	ci left: 3.074877e-01	ci right 3.258192e-01	k: 3166	n:10000
Cons ci ratio: 8.007830e-02	ci left: 1.855021e-01	ci right 2.010770e-01	k: 1932	n:10000
KS ci ratio: 7.002437e-02	ci left: 2.301744e-01	ci right 2.469782e-01	k: 2385	n:10000
MPP4   10000 perm   2 sec   (5545 perm/sec)   p_kst 2.385000e-01   p_cons 1.932000e-01   p_joint 3.166000e-01

Outputting figure to mutsig2_images.part000000000107/MPP4.5_1998_10000_0.2385_0.1932_0.3166.png
                gene_name: MPP4
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 24 percent done.
MORC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.027211e-02	ci left: 7.808694e-01	ci right 7.969620e-01	k: 7890	n:10000
Cons ci ratio: 4.651369e-02	ci left: 4.055180e-01	ci right 4.249314e-01	k: 4152	n:10000
KS ci ratio: 2.225767e-02	ci left: 7.476605e-01	ci right 7.645900e-01	k: 7562	n:10000
MORC4   10000 perm   2 sec   (5087 perm/sec)   p_kst 7.562000e-01   p_cons 4.152000e-01   p_joint 7.890000e-01

Outputting figure to mutsig2_images.part000000000107/MORC4.4_2882_10000_0.7562_0.4152_0.789.png
                gene_name: MORC4
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 26 percent done.
MORF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.515190e-03	ci left: 9.845824e-01	ci right 9.891274e-01	k: 9870	n:10000
Cons ci ratio: 3.982620e-02	ci left: 4.821550e-01	ci right 5.018497e-01	k: 4920	n:10000
KS ci ratio: 2.700660e-02	ci left: 6.688421e-01	ci right 6.872541e-01	k: 6781	n:10000
MORF4   10000 perm   2 sec   (6382 perm/sec)   p_kst 6.781000e-01   p_cons 4.920000e-01   p_joint 9.870000e-01

Outputting figure to mutsig2_images.part000000000107/MORF4.4_711_10000_0.6781_0.492_0.987.png
                gene_name: MORF4
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 29 percent done.
MORF4L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.462305e-02	ci left: 5.519083e-01	ci right 5.714558e-01	k: 5617	n:10000
KS ci ratio: 6.465934e-03	ci left: 9.702664e-01	ci right 9.766537e-01	k: 9736	n:10000
MORF4L2   10000 perm   2 sec   (6392 perm/sec)   p_kst 9.736000e-01   p_cons 5.617000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000107/MORF4L2.4_871_10000_0.9736_0.5617_1.png
                gene_name: MORF4L2
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 32 percent done.
MOS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.945635e-01	ci left: 1.483579e-02	ci right 2.005075e-02	k: 173	n:10000
Cons ci ratio: 6.447185e-02	ci left: 2.611186e-01	ci right 2.786156e-01	k: 2698	n:10000
KS ci ratio: 4.136457e-01	ci left: 7.063669e-03	ci right 1.083076e-02	k: 88	n:10000
MOS   10000 perm   2 sec   (6169 perm/sec)   p_kst 8.800000e-03   p_cons 2.698000e-01   p_joint 1.730000e-02

Joint ci ratio: 1.281378e-01	ci left: 4.182901e-02	ci right 4.760429e-02	k: 893	n:20000
Cons ci ratio: 4.523288e-02	ci left: 2.667845e-01	ci right 2.791816e-01	k: 5459	n:20000
KS ci ratio: 2.958716e-01	ci left: 7.413449e-03	ci right 1.003239e-02	k: 173	n:20000
MOS   20000 perm   4 sec   (5458 perm/sec)   p_kst 8.650000e-03   p_cons 2.729500e-01   p_joint 4.465000e-02

Joint ci ratio: 1.256285e-01	ci left: 2.945537e-02	ci right 3.343605e-02	k: 942	n:30000
Cons ci ratio: 3.722002e-02	ci left: 2.648826e-01	ci right 2.749620e-01	k: 8097	n:30000
KS ci ratio: 2.425193e-01	ci left: 7.586271e-03	ci right 9.710531e-03	k: 258	n:30000
MOS   30000 perm   6 sec   (5127 perm/sec)   p_kst 8.600000e-03   p_cons 2.699000e-01   p_joint 3.140000e-02

Joint ci ratio: 1.397141e-01	ci left: 1.795011e-02	ci right 2.067031e-02	k: 771	n:40000
Cons ci ratio: 3.225670e-02	ci left: 2.652805e-01	ci right 2.740029e-01	k: 10785	n:40000
KS ci ratio: 2.113705e-01	ci left: 7.623672e-03	ci right 9.448754e-03	k: 340	n:40000
MOS   40000 perm   8 sec   (4976 perm/sec)   p_kst 8.500000e-03   p_cons 2.696250e-01   p_joint 1.927500e-02

Joint ci ratio: 1.154959e-01	ci left: 2.121787e-02	ci right 2.383797e-02	k: 1125	n:50000
Cons ci ratio: 2.879353e-02	ci left: 2.665301e-01	ci right 2.743366e-01	k: 13521	n:50000
KS ci ratio: 1.918563e-01	ci left: 7.485326e-03	ci right 9.092548e-03	k: 413	n:50000
MOS   50000 perm   10 sec   (4814 perm/sec)   p_kst 8.260000e-03   p_cons 2.704200e-01   p_joint 2.250000e-02

Joint ci ratio: 1.040317e-01	ci left: 2.191278e-02	ci right 2.433365e-02	k: 1386	n:60000
Cons ci ratio: 2.634866e-02	ci left: 2.659194e-01	ci right 2.730362e-01	k: 16168	n:60000
KS ci ratio: 1.791471e-01	ci left: 7.207175e-03	ci right 8.641037e-03	k: 474	n:60000
MOS   60000 perm   13 sec   (4693 perm/sec)   p_kst 7.900000e-03   p_cons 2.694667e-01   p_joint 2.310000e-02

Joint ci ratio: 9.119899e-02	ci left: 2.454032e-02	ci right 2.689922e-02	k: 1799	n:70000
Cons ci ratio: 2.436834e-02	ci left: 2.665998e-01	ci right 2.731907e-01	k: 18892	n:70000
KS ci ratio: 1.654324e-01	ci left: 7.298584e-03	ci right 8.628403e-03	k: 556	n:70000
MOS   70000 perm   15 sec   (4596 perm/sec)   p_kst 7.942857e-03   p_cons 2.698857e-01   p_joint 2.570000e-02

Joint ci ratio: 7.613355e-02	ci left: 3.085250e-02	ci right 3.330659e-02	k: 2565	n:80000
Cons ci ratio: 2.282056e-02	ci left: 2.663653e-01	ci right 2.725265e-01	k: 21555	n:80000
KS ci ratio: 1.531282e-01	ci left: 7.502539e-03	ci right 8.758525e-03	k: 649	n:80000
MOS   80000 perm   18 sec   (4501 perm/sec)   p_kst 8.112500e-03   p_cons 2.694375e-01   p_joint 3.206250e-02

Joint ci ratio: 7.034154e-02	ci left: 3.218101e-02	ci right 3.453808e-02	k: 3001	n:90000
Cons ci ratio: 2.156808e-02	ci left: 2.655844e-01	ci right 2.713861e-01	k: 24163	n:90000
KS ci ratio: 1.448961e-01	ci left: 7.481892e-03	ci right 8.661257e-03	k: 725	n:90000
MOS   90000 perm   20 sec   (4415 perm/sec)   p_kst 8.055556e-03   p_cons 2.684778e-01   p_joint 3.334444e-02

Joint ci ratio: 6.800296e-02	ci left: 3.106528e-02	ci right 3.326197e-02	k: 3215	n:100000
Cons ci ratio: 2.042275e-02	ci left: 2.664726e-01	ci right 2.719808e-01	k: 26922	n:100000
KS ci ratio: 1.362455e-01	ci left: 7.650359e-03	ci right 8.778446e-03	k: 820	n:100000
MOS   100000 perm   23 sec   (4335 perm/sec)   p_kst 8.200000e-03   p_cons 2.692200e-01   p_joint 3.215000e-02

Joint ci ratio: 6.423663e-02	ci left: 3.169258e-02	ci right 3.380488e-02	k: 3601	n:110000
Cons ci ratio: 1.944775e-02	ci left: 2.670970e-01	ci right 2.723515e-01	k: 29669	n:110000
KS ci ratio: 1.294793e-01	ci left: 7.728311e-03	ci right 8.806947e-03	k: 908	n:110000
MOS   110000 perm   26 sec   (4259 perm/sec)   p_kst 8.254545e-03   p_cons 2.697182e-01   p_joint 3.273636e-02

Joint ci ratio: 6.478289e-02	ci left: 2.864830e-02	ci right 3.057452e-02	k: 3552	n:120000
Cons ci ratio: 1.864318e-02	ci left: 2.667168e-01	ci right 2.717443e-01	k: 32307	n:120000
KS ci ratio: 1.242603e-01	ci left: 7.713656e-03	ci right 8.743655e-03	k: 986	n:120000
MOS   120000 perm   29 sec   (4190 perm/sec)   p_kst 8.216667e-03   p_cons 2.692250e-01   p_joint 2.960000e-02

Joint ci ratio: 6.670577e-02	ci left: 2.501304e-02	ci right 2.674666e-02	k: 3363	n:130000
Cons ci ratio: 1.794698e-02	ci left: 2.660462e-01	ci right 2.708718e-01	k: 34899	n:130000
KS ci ratio: 1.197388e-01	ci left: 7.687068e-03	ci right 8.673521e-03	k: 1062	n:130000
MOS   130000 perm   32 sec   (4119 perm/sec)   p_kst 8.169231e-03   p_cons 2.684538e-01   p_joint 2.586923e-02

Joint ci ratio: 6.563827e-02	ci left: 2.402680e-02	ci right 2.566439e-02	k: 3477	n:140000
Cons ci ratio: 1.728994e-02	ci left: 2.662296e-01	ci right 2.708800e-01	k: 37597	n:140000
KS ci ratio: 1.154732e-01	ci left: 7.692614e-03	ci right 8.642212e-03	k: 1142	n:140000
MOS   140000 perm   35 sec   (4051 perm/sec)   p_kst 8.157143e-03   p_cons 2.685500e-01   p_joint 2.483571e-02

Joint ci ratio: 6.806568e-02	ci left: 2.089647e-02	ci right 2.237544e-02	k: 3244	n:150000
Cons ci ratio: 1.672540e-02	ci left: 2.657996e-01	ci right 2.702893e-01	k: 40206	n:150000
KS ci ratio: 1.117254e-01	ci left: 7.684997e-03	ci right 8.600835e-03	k: 1220	n:150000
MOS   150000 perm   38 sec   (3984 perm/sec)   p_kst 8.133333e-03   p_cons 2.680400e-01   p_joint 2.162667e-02

Joint ci ratio: 6.716807e-02	ci left: 2.014316e-02	ci right 2.154927e-02	k: 3334	n:160000
Cons ci ratio: 1.619236e-02	ci left: 2.659181e-01	ci right 2.702653e-01	k: 42894	n:160000
KS ci ratio: 1.078194e-01	ci left: 7.751756e-03	ci right 8.641203e-03	k: 1310	n:160000
MOS   160000 perm   41 sec   (3922 perm/sec)   p_kst 8.187500e-03   p_cons 2.680875e-01   p_joint 2.083750e-02

Joint ci ratio: 6.606743e-02	ci left: 1.961751e-02	ci right 2.096362e-02	k: 3448	n:170000
Cons ci ratio: 1.572326e-02	ci left: 2.656257e-01	ci right 2.698411e-01	k: 45514	n:170000
KS ci ratio: 1.041091e-01	ci left: 7.839804e-03	ci right 8.706503e-03	k: 1405	n:170000
MOS   170000 perm   44 sec   (3864 perm/sec)   p_kst 8.264706e-03   p_cons 2.677294e-01   p_joint 2.028235e-02

Joint ci ratio: 6.602740e-02	ci left: 1.857103e-02	ci right 1.984452e-02	k: 3456	n:180000
Cons ci ratio: 1.527839e-02	ci left: 2.657332e-01	ci right 2.698299e-01	k: 48200	n:180000
KS ci ratio: 1.013031e-01	ci left: 7.831872e-03	ci right 8.672970e-03	k: 1484	n:180000
MOS   180000 perm   47 sec   (3805 perm/sec)   p_kst 8.244444e-03   p_cons 2.677778e-01   p_joint 1.920000e-02

Joint ci ratio: 6.307017e-02	ci left: 1.929747e-02	ci right 2.055935e-02	k: 3785	n:190000
Cons ci ratio: 1.486866e-02	ci left: 2.658466e-01	ci right 2.698342e-01	k: 50889	n:190000
KS ci ratio: 9.903212e-02	ci left: 7.773717e-03	ci right 8.588764e-03	k: 1553	n:190000
MOS   190000 perm   51 sec   (3749 perm/sec)   p_kst 8.173684e-03   p_cons 2.678368e-01   p_joint 1.992105e-02

Outputting figure to mutsig2_images.part000000000107/MOS.4_1044_190000_0.0081737_0.26784_0.019921.png
                gene_name: MOS
               theta_stop: 0.099 
                    nperm: 190000 
                     p_ks: 0.0082 
        ci_ks_bounds_left: 0.0078 
       ci_ks_bounds_right: 0.0086 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.020 
     ci_joint_bounds_left: 0.019 
    ci_joint_bounds_right: 0.021 

Current progress: 35 percent done.
MPO
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.172899e-02	ci left: 4.588797e-01	ci right 4.785385e-01	k: 4687	n:10000
Cons ci ratio: 3.654802e-02	ci left: 5.250651e-01	ci right 5.447146e-01	k: 5349	n:10000
KS ci ratio: 6.062823e-02	ci left: 2.857752e-01	ci right 3.037445e-01	k: 2947	n:10000
MPO   10000 perm   2 sec   (5434 perm/sec)   p_kst 2.947000e-01   p_cons 5.349000e-01   p_joint 4.687000e-01

Outputting figure to mutsig2_images.part000000000107/MPO.4_2286_10000_0.2947_0.5349_0.4687.png
                gene_name: MPO
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 38 percent done.
MPP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.922036e-02	ci left: 7.983141e-01	ci right 8.139072e-01	k: 8062	n:10000
Cons ci ratio: 9.600000e-02	ci left: 1.359974e-01	ci right 1.498113e-01	k: 1428	n:10000
KS ci ratio: 2.011987e-02	ci left: 7.834036e-01	ci right 7.994263e-01	k: 7915	n:10000
MPP5   10000 perm   2 sec   (6179 perm/sec)   p_kst 7.915000e-01   p_cons 1.428000e-01   p_joint 8.062000e-01

Outputting figure to mutsig2_images.part000000000107/MPP5.4_2080_10000_0.7915_0.1428_0.8062.png
                gene_name: MPP5
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 41 percent done.
MPP7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.622383e-02	ci left: 3.178069e-01	ci right 3.362939e-01	k: 3270	n:10000
Cons ci ratio: 8.974894e-02	ci left: 1.529626e-01	ci right 1.674359e-01	k: 1601	n:10000
KS ci ratio: 4.479465e-02	ci left: 4.238575e-01	ci right 4.433812e-01	k: 4336	n:10000
MPP7   10000 perm   2 sec   (5991 perm/sec)   p_kst 4.336000e-01   p_cons 1.601000e-01   p_joint 3.270000e-01

Outputting figure to mutsig2_images.part000000000107/MPP7.4_1795_10000_0.4336_0.1601_0.327.png
                gene_name: MPP7
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 44 percent done.
MRGPRX4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.452330e-02	ci left: 7.097745e-01	ci right 7.274979e-01	k: 7187	n:10000
Cons ci ratio: 4.180446e-02	ci left: 4.579811e-01	ci right 4.776377e-01	k: 4678	n:10000
KS ci ratio: 3.973073e-02	ci left: 4.833543e-01	ci right 5.030497e-01	k: 4932	n:10000
MRGPRX4   10000 perm   2 sec   (6428 perm/sec)   p_kst 4.932000e-01   p_cons 4.678000e-01   p_joint 7.187000e-01

Outputting figure to mutsig2_images.part000000000107/MRGPRX4.4_973_10000_0.4932_0.4678_0.7187.png
                gene_name: MRGPRX4
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 47 percent done.
MRPL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.760682e-02	ci left: 2.430195e-01	ci right 2.601254e-01	k: 2515	n:10000
Cons ci ratio: 2.895237e-02	ci left: 6.375415e-01	ci right 6.563728e-01	k: 6470	n:10000
KS ci ratio: 1.029581e-01	ci left: 1.200443e-01	ci right 1.331741e-01	k: 1265	n:10000
MRPL1   10000 perm   2 sec   (6002 perm/sec)   p_kst 1.265000e-01   p_cons 6.470000e-01   p_joint 2.515000e-01

Joint ci ratio: 5.316103e-02	ci left: 2.080359e-01	ci right 2.194475e-01	k: 4274	n:20000
Cons ci ratio: 2.072941e-02	ci left: 6.346078e-01	ci right 6.479511e-01	k: 12826	n:20000
KS ci ratio: 7.194405e-02	ci left: 1.245805e-01	ci right 1.339276e-01	k: 2584	n:20000
MRPL1   20000 perm   4 sec   (5318 perm/sec)   p_kst 1.292000e-01   p_cons 6.413000e-01   p_joint 2.137000e-01

Outputting figure to mutsig2_images.part000000000107/MRPL1.4_1014_20000_0.1292_0.6413_0.2137.png
                gene_name: MRPL1
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 50 percent done.
MOSC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.227051e-02	ci left: 5.863057e-01	ci right 6.056384e-01	k: 5960	n:10000
Cons ci ratio: 3.668042e-02	ci left: 5.232632e-01	ci right 5.429175e-01	k: 5331	n:10000
KS ci ratio: 4.252495e-02	ci left: 4.494958e-01	ci right 4.691280e-01	k: 4593	n:10000
MOSC1   10000 perm   2 sec   (6522 perm/sec)   p_kst 4.593000e-01   p_cons 5.331000e-01   p_joint 5.960000e-01

Outputting figure to mutsig2_images.part000000000107/MOSC1.3_1042_10000_0.4593_0.5331_0.596.png
                gene_name: MOSC1
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 53 percent done.
MPPED2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.123949e-02	ci left: 3.596312e-01	ci right 3.786451e-01	k: 3691	n:10000
Cons ci ratio: 4.990243e-02	ci left: 3.719650e-01	ci right 3.911040e-01	k: 3815	n:10000
KS ci ratio: 5.471340e-02	ci left: 3.298194e-01	ci right 3.484744e-01	k: 3391	n:10000
MPPED2   10000 perm   2 sec   (6357 perm/sec)   p_kst 3.391000e-01   p_cons 3.815000e-01   p_joint 3.691000e-01

Outputting figure to mutsig2_images.part000000000107/MPPED2.3_981_10000_0.3391_0.3815_0.3691.png
                gene_name: MPPED2
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 56 percent done.
MRGPRE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.371212e-01	ci left: 2.344048e-02	ci right 2.983930e-02	k: 265	n:10000
Cons ci ratio: 2.960179e-02	ci left: 6.272853e-01	ci right 6.462349e-01	k: 6368	n:10000
KS ci ratio: 5.896315e-01	ci left: 3.113627e-03	ci right 5.787748e-03	k: 43	n:10000
MRGPRE   10000 perm   1 sec   (7043 perm/sec)   p_kst 4.300000e-03   p_cons 6.368000e-01   p_joint 2.650000e-02

Joint ci ratio: 1.474078e-01	ci left: 3.162770e-02	ci right 3.670891e-02	k: 682	n:20000
Cons ci ratio: 2.086250e-02	ci left: 6.316463e-01	ci right 6.450135e-01	k: 12767	n:20000
KS ci ratio: 4.055288e-01	ci left: 3.709812e-03	ci right 5.638552e-03	k: 92	n:20000
MRGPRE   20000 perm   3 sec   (6205 perm/sec)   p_kst 4.600000e-03   p_cons 6.383500e-01   p_joint 3.410000e-02

Joint ci ratio: 1.481641e-01	ci left: 2.110848e-02	ci right 2.451814e-02	k: 683	n:30000
Cons ci ratio: 1.595255e-02	ci left: 6.627052e-01	ci right 6.733956e-01	k: 20042	n:30000
KS ci ratio: 3.430554e-01	ci left: 3.591244e-03	ci right 5.107218e-03	k: 129	n:30000
MRGPRE   30000 perm   5 sec   (5829 perm/sec)   p_kst 4.300000e-03   p_cons 6.680667e-01   p_joint 2.276667e-02

Joint ci ratio: 1.509714e-01	ci left: 1.532245e-02	ci right 1.784843e-02	k: 662	n:40000
Cons ci ratio: 1.387437e-02	ci left: 6.615292e-01	ci right 6.707967e-01	k: 26647	n:40000
KS ci ratio: 3.017950e-01	ci left: 3.566836e-03	ci right 4.856777e-03	k: 167	n:40000
MRGPRE   40000 perm   7 sec   (5591 perm/sec)   p_kst 4.175000e-03   p_cons 6.661750e-01   p_joint 1.655000e-02

Joint ci ratio: 1.019111e-01	ci left: 2.727346e-02	ci right 3.022160e-02	k: 1436	n:50000
Cons ci ratio: 1.244581e-02	ci left: 6.607230e-01	ci right 6.690178e-01	k: 33244	n:50000
KS ci ratio: 2.705821e-01	ci left: 3.614787e-03	ci right 4.763953e-03	k: 208	n:50000
MRGPRE   50000 perm   9 sec   (5401 perm/sec)   p_kst 4.160000e-03   p_cons 6.648800e-01   p_joint 2.872000e-02

Joint ci ratio: 9.750070e-02	ci left: 2.495281e-02	ci right 2.752662e-02	k: 1573	n:60000
Cons ci ratio: 1.135753e-02	ci left: 6.612405e-01	ci right 6.688102e-01	k: 39902	n:60000
KS ci ratio: 2.494151e-01	ci left: 3.588852e-03	ci right 4.626685e-03	k: 245	n:60000
MRGPRE   60000 perm   11 sec   (5252 perm/sec)   p_kst 4.083333e-03   p_cons 6.650333e-01   p_joint 2.621667e-02

Joint ci ratio: 9.875249e-02	ci left: 2.092608e-02	ci right 2.311379e-02	k: 1540	n:70000
Cons ci ratio: 1.051921e-02	ci left: 6.613464e-01	ci right 6.683543e-01	k: 46540	n:70000
KS ci ratio: 2.309138e-01	ci left: 3.626681e-03	ci right 4.586571e-03	k: 286	n:70000
MRGPRE   70000 perm   14 sec   (5125 perm/sec)   p_kst 4.085714e-03   p_cons 6.648571e-01   p_joint 2.200000e-02

Joint ci ratio: 7.792418e-02	ci left: 2.946637e-02	ci right 3.186783e-02	k: 2452	n:80000
Cons ci ratio: 9.844408e-03	ci left: 6.613663e-01	ci right 6.679217e-01	k: 53172	n:80000
KS ci ratio: 2.146897e-01	ci left: 3.704506e-03	ci right 4.607037e-03	k: 331	n:80000
MRGPRE   80000 perm   16 sec   (5006 perm/sec)   p_kst 4.137500e-03   p_cons 6.646500e-01   p_joint 3.065000e-02

Joint ci ratio: 7.775204e-02	ci left: 2.639768e-02	ci right 2.854403e-02	k: 2471	n:90000
Cons ci ratio: 9.257936e-03	ci left: 6.626851e-01	ci right 6.688598e-01	k: 59920	n:90000
KS ci ratio: 2.011981e-01	ci left: 3.777427e-03	ci right 4.632793e-03	k: 377	n:90000
MRGPRE   90000 perm   18 sec   (4899 perm/sec)   p_kst 4.188889e-03   p_cons 6.657778e-01   p_joint 2.745556e-02

Joint ci ratio: 7.345560e-02	ci left: 2.667192e-02	ci right 2.871560e-02	k: 2768	n:100000
Cons ci ratio: 8.778274e-03	ci left: 6.630770e-01	ci right 6.689333e-01	k: 66601	n:100000
KS ci ratio: 1.915616e-01	ci left: 3.770516e-03	ci right 4.578660e-03	k: 416	n:100000
MRGPRE   100000 perm   21 sec   (4796 perm/sec)   p_kst 4.160000e-03   p_cons 6.660100e-01   p_joint 2.768000e-02

Joint ci ratio: 7.309163e-02	ci left: 2.454963e-02	ci right 2.642096e-02	k: 2802	n:110000
Cons ci ratio: 8.361058e-03	ci left: 6.636776e-01	ci right 6.692590e-01	k: 73312	n:110000
KS ci ratio: 1.812046e-01	ci left: 3.852439e-03	ci right 4.628603e-03	k: 465	n:110000
MRGPRE   110000 perm   23 sec   (4692 perm/sec)   p_kst 4.227273e-03   p_cons 6.664727e-01   p_joint 2.547273e-02

Joint ci ratio: 6.837698e-02	ci left: 2.574603e-02	ci right 2.757694e-02	k: 3198	n:120000
Cons ci ratio: 8.017825e-03	ci left: 6.630896e-01	ci right 6.684358e-01	k: 79892	n:120000
KS ci ratio: 1.718621e-01	ci left: 3.945615e-03	ci right 4.695317e-03	k: 517	n:120000
MRGPRE   120000 perm   26 sec   (4599 perm/sec)   p_kst 4.308333e-03   p_cons 6.657667e-01   p_joint 2.665000e-02

Joint ci ratio: 6.323081e-02	ci left: 2.780665e-02	ci right 2.962983e-02	k: 3732	n:130000
Cons ci ratio: 7.695382e-03	ci left: 6.636522e-01	ci right 6.687866e-01	k: 86609	n:130000
KS ci ratio: 1.648495e-01	ci left: 3.973683e-03	ci right 4.694856e-03	k: 562	n:130000
MRGPRE   130000 perm   29 sec   (4511 perm/sec)   p_kst 4.323077e-03   p_cons 6.662231e-01   p_joint 2.870769e-02

Joint ci ratio: 6.370194e-02	ci left: 2.549613e-02	ci right 2.718071e-02	k: 3686	n:140000
Cons ci ratio: 7.420727e-03	ci left: 6.634294e-01	ci right 6.683780e-01	k: 93227	n:140000
KS ci ratio: 1.585000e-01	ci left: 4.005135e-03	ci right 4.701354e-03	k: 608	n:140000
MRGPRE   140000 perm   32 sec   (4432 perm/sec)   p_kst 4.342857e-03   p_cons 6.659071e-01   p_joint 2.632857e-02

Joint ci ratio: 6.033964e-02	ci left: 2.654027e-02	ci right 2.819806e-02	k: 4104	n:150000
Cons ci ratio: 7.168362e-03	ci left: 6.635599e-01	ci right 6.683403e-01	k: 99893	n:150000
KS ci ratio: 1.522492e-01	ci left: 4.064919e-03	ci right 4.741124e-03	k: 659	n:150000
MRGPRE   150000 perm   34 sec   (4358 perm/sec)   p_kst 4.393333e-03   p_cons 6.659533e-01   p_joint 2.736000e-02

Joint ci ratio: 5.657512e-02	ci left: 2.830646e-02	ci right 2.996066e-02	k: 4660	n:160000
Cons ci ratio: 6.938743e-03	ci left: 6.637643e-01	ci right 6.683922e-01	k: 106573	n:160000
KS ci ratio: 1.468917e-01	ci left: 4.105659e-03	ci right 4.762498e-03	k: 708	n:160000
MRGPRE   160000 perm   37 sec   (4283 perm/sec)   p_kst 4.425000e-03   p_cons 6.660812e-01   p_joint 2.912500e-02

Joint ci ratio: 5.505399e-02	ci left: 2.816098e-02	ci right 2.976102e-02	k: 4922	n:170000
Cons ci ratio: 6.730309e-03	ci left: 6.639172e-01	ci right 6.684065e-01	k: 113248	n:170000
KS ci ratio: 1.427261e-01	ci left: 4.102257e-03	ci right 4.738355e-03	k: 750	n:170000
MRGPRE   170000 perm   40 sec   (4215 perm/sec)   p_kst 4.411765e-03   p_cons 6.661647e-01   p_joint 2.895294e-02

Joint ci ratio: 5.653875e-02	ci left: 2.527519e-02	ci right 2.675124e-02	k: 4681	n:180000
Cons ci ratio: 6.544579e-03	ci left: 6.637156e-01	ci right 6.680791e-01	k: 119862	n:180000
KS ci ratio: 1.414260e-01	ci left: 3.949345e-03	ci right 4.555682e-03	k: 764	n:180000
MRGPRE   180000 perm   44 sec   (4117 perm/sec)   p_kst 4.244444e-03   p_cons 6.659000e-01   p_joint 2.600556e-02

Joint ci ratio: 4.794703e-02	ci left: 3.316878e-02	ci right 3.480337e-02	k: 6456	n:190000
Cons ci ratio: 6.375377e-03	ci left: 6.633997e-01	ci right 6.676479e-01	k: 126450	n:190000
KS ci ratio: 1.382138e-01	ci left: 3.924327e-03	ci right 4.512011e-03	k: 800	n:190000
MRGPRE   190000 perm   47 sec   (4037 perm/sec)   p_kst 4.210526e-03   p_cons 6.655263e-01   p_joint 3.397895e-02

Joint ci ratio: 4.822119e-02	ci left: 3.121318e-02	ci right 3.276042e-02	k: 6396	n:200000
Cons ci ratio: 6.213271e-03	ci left: 6.635024e-01	ci right 6.676428e-01	k: 133115	n:200000
KS ci ratio: 1.348071e-01	ci left: 3.926109e-03	ci right 4.498407e-03	k: 841	n:200000
MRGPRE   200000 perm   51 sec   (3896 perm/sec)   p_kst 4.205000e-03   p_cons 6.655750e-01   p_joint 3.198000e-02

Joint ci ratio: 4.722949e-02	ci left: 3.101125e-02	ci right 3.251600e-02	k: 6669	n:210000
Cons ci ratio: 6.067408e-03	ci left: 6.632676e-01	ci right 6.673088e-01	k: 139711	n:210000
KS ci ratio: 1.320920e-01	ci left: 3.900251e-03	ci right 4.456430e-03	k: 876	n:210000
MRGPRE   210000 perm   55 sec   (3823 perm/sec)   p_kst 4.171429e-03   p_cons 6.652905e-01   p_joint 3.175714e-02

Joint ci ratio: 4.674682e-02	ci left: 3.024822e-02	ci right 3.170054e-02	k: 6813	n:220000
Cons ci ratio: 5.926997e-03	ci left: 6.633829e-01	ci right 6.673309e-01	k: 146379	n:220000
KS ci ratio: 1.282696e-01	ci left: 3.956038e-03	ci right 4.502606e-03	k: 929	n:220000
MRGPRE   220000 perm   59 sec   (3760 perm/sec)   p_kst 4.222727e-03   p_cons 6.653591e-01   p_joint 3.096818e-02

Joint ci ratio: 4.579474e-02	ci left: 3.016644e-02	ci right 3.158455e-02	k: 7100	n:230000
Cons ci ratio: 5.795676e-03	ci left: 6.635066e-01	ci right 6.673675e-01	k: 153051	n:230000
KS ci ratio: 1.256627e-01	ci left: 3.948215e-03	ci right 4.481790e-03	k: 968	n:230000
MRGPRE   230000 perm   62 sec   (3713 perm/sec)   p_kst 4.208696e-03   p_cons 6.654391e-01   p_joint 3.086957e-02

Joint ci ratio: 4.635589e-02	ci left: 2.826222e-02	ci right 2.960752e-02	k: 6943	n:240000
Cons ci ratio: 5.674573e-03	ci left: 6.634748e-01	ci right 6.672546e-01	k: 159688	n:240000
KS ci ratio: 1.235166e-01	ci left: 3.920954e-03	ci right 4.441132e-03	k: 1002	n:240000
MRGPRE   240000 perm   65 sec   (3665 perm/sec)   p_kst 4.175000e-03   p_cons 6.653667e-01   p_joint 2.892917e-02

Joint ci ratio: 4.481156e-02	ci left: 2.903406e-02	ci right 3.036887e-02	k: 7424	n:250000
Cons ci ratio: 5.559358e-03	ci left: 6.635585e-01	ci right 6.672617e-01	k: 166353	n:250000
KS ci ratio: 1.206040e-01	ci left: 3.954136e-03	ci right 4.465464e-03	k: 1051	n:250000
MRGPRE   250000 perm   69 sec   (3620 perm/sec)   p_kst 4.204000e-03   p_cons 6.654120e-01   p_joint 2.969600e-02

Joint ci ratio: 4.236680e-02	ci left: 3.120116e-02	ci right 3.255545e-02	k: 8287	n:260000
Cons ci ratio: 5.452111e-03	ci left: 6.635363e-01	ci right 6.671677e-01	k: 172992	n:260000
KS ci ratio: 1.187578e-01	ci left: 3.925173e-03	ci right 4.424440e-03	k: 1084	n:260000
MRGPRE   260000 perm   73 sec   (3575 perm/sec)   p_kst 4.169231e-03   p_cons 6.653538e-01   p_joint 3.187308e-02

Joint ci ratio: 4.217005e-02	ci left: 3.035677e-02	ci right 3.166814e-02	k: 8372	n:270000
Cons ci ratio: 5.350352e-03	ci left: 6.635572e-01	ci right 6.671207e-01	k: 179642	n:270000
KS ci ratio: 1.163685e-01	ci left: 3.941564e-03	ci right 4.432136e-03	k: 1129	n:270000
MRGPRE   270000 perm   77 sec   (3529 perm/sec)   p_kst 4.181481e-03   p_cons 6.653407e-01   p_joint 3.100741e-02

Joint ci ratio: 4.200576e-02	ci left: 2.953030e-02	ci right 3.080087e-02	k: 8445	n:280000
Cons ci ratio: 5.250799e-03	ci left: 6.638562e-01	ci right 6.673547e-01	k: 186370	n:280000
KS ci ratio: 1.143624e-01	ci left: 3.939529e-03	ci right 4.420823e-03	k: 1169	n:280000
MRGPRE   280000 perm   81 sec   (3446 perm/sec)   p_kst 4.175000e-03   p_cons 6.656071e-01   p_joint 3.016071e-02

Joint ci ratio: 4.126215e-02	ci left: 2.955963e-02	ci right 3.080841e-02	k: 8752	n:290000
Cons ci ratio: 5.159877e-03	ci left: 6.638519e-01	ci right 6.672896e-01	k: 193016	n:290000
KS ci ratio: 1.123633e-01	ci left: 3.944404e-03	ci right 4.417313e-03	k: 1211	n:290000
MRGPRE   290000 perm   85 sec   (3407 perm/sec)   p_kst 4.175862e-03   p_cons 6.655724e-01   p_joint 3.017931e-02

Joint ci ratio: 4.053362e-02	ci left: 2.962018e-02	ci right 3.084891e-02	k: 9069	n:300000
Cons ci ratio: 5.069494e-03	ci left: 6.642022e-01	ci right 6.675812e-01	k: 199768	n:300000
KS ci ratio: 1.106429e-01	ci left: 3.936057e-03	ci right 4.400268e-03	k: 1249	n:300000
MRGPRE   300000 perm   89 sec   (3366 perm/sec)   p_kst 4.163333e-03   p_cons 6.658933e-01   p_joint 3.023000e-02

Joint ci ratio: 3.944544e-02	ci left: 3.026486e-02	ci right 3.148587e-02	k: 9570	n:310000
Cons ci ratio: 4.986477e-03	ci left: 6.642817e-01	ci right 6.676056e-01	k: 206443	n:310000
KS ci ratio: 1.086188e-01	ci left: 3.956545e-03	ci right 4.414090e-03	k: 1296	n:310000
MRGPRE   310000 perm   93 sec   (3326 perm/sec)   p_kst 4.180645e-03   p_cons 6.659452e-01   p_joint 3.087097e-02

Joint ci ratio: 3.877917e-02	ci left: 3.034337e-02	ci right 3.154640e-02	k: 9901	n:320000
Cons ci ratio: 4.907582e-03	ci left: 6.643409e-01	ci right 6.676123e-01	k: 213113	n:320000
KS ci ratio: 1.065427e-01	ci left: 3.987993e-03	ci right 4.439808e-03	k: 1347	n:320000
MRGPRE   320000 perm   97 sec   (3286 perm/sec)   p_kst 4.209375e-03   p_cons 6.659781e-01   p_joint 3.094062e-02

Joint ci ratio: 3.908369e-02	ci left: 2.900336e-02	ci right 3.016249e-02	k: 9761	n:330000
Cons ci ratio: 4.831362e-03	ci left: 6.644849e-01	ci right 6.677061e-01	k: 219812	n:330000
KS ci ratio: 1.046941e-01	ci left: 4.008759e-03	ci right 4.454561e-03	k: 1395	n:330000
MRGPRE   330000 perm   102 sec   (3248 perm/sec)   p_kst 4.227273e-03   p_cons 6.660970e-01   p_joint 2.957879e-02

Joint ci ratio: 3.731475e-02	ci left: 3.085130e-02	ci right 3.202729e-02	k: 10688	n:340000
Cons ci ratio: 4.757830e-03	ci left: 6.646915e-01	ci right 6.678645e-01	k: 226535	n:340000
KS ci ratio: 1.029027e-01	ci left: 4.031233e-03	ci right 4.471400e-03	k: 1444	n:340000
MRGPRE   340000 perm   106 sec   (3210 perm/sec)   p_kst 4.247059e-03   p_cons 6.662794e-01   p_joint 3.143529e-02

Joint ci ratio: 3.676469e-02	ci left: 3.088132e-02	ci right 3.204074e-02	k: 11010	n:350000
Cons ci ratio: 4.689212e-03	ci left: 6.647293e-01	ci right 6.678565e-01	k: 233203	n:350000
KS ci ratio: 1.013365e-01	ci left: 4.041344e-03	ci right 4.475498e-03	k: 1489	n:350000
MRGPRE   350000 perm   110 sec   (3174 perm/sec)   p_kst 4.254286e-03   p_cons 6.662943e-01   p_joint 3.145714e-02

Joint ci ratio: 3.550258e-02	ci left: 3.217373e-02	ci right 3.333936e-02	k: 11791	n:360000
Cons ci ratio: 4.624231e-03	ci left: 6.646930e-01	ci right 6.677765e-01	k: 239845	n:360000
KS ci ratio: 9.951471e-02	ci left: 4.078029e-03	ci right 4.507788e-03	k: 1544	n:360000
MRGPRE   360000 perm   115 sec   (3137 perm/sec)   p_kst 4.288889e-03   p_cons 6.662361e-01   p_joint 3.275278e-02

Outputting figure to mutsig2_images.part000000000107/MRGPRE.3_940_360000_0.0042889_0.66624_0.032753.png
                gene_name: MRGPRE
               theta_stop: 0.100 
                    nperm: 360000 
                     p_ks: 0.0043 
        ci_ks_bounds_left: 0.0041 
       ci_ks_bounds_right: 0.0045 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.033 
     ci_joint_bounds_left: 0.032 
    ci_joint_bounds_right: 0.033 

Current progress: 59 percent done.
MRPL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.563659e-02	ci left: 6.913143e-01	ci right 7.093688e-01	k: 7004	n:10000
Cons ci ratio: 4.570908e-02	ci left: 4.139884e-01	ci right 4.334561e-01	k: 4237	n:10000
KS ci ratio: 1.689324e-02	ci left: 8.361272e-01	ci right 8.504722e-01	k: 8434	n:10000
MRPL3   10000 perm   2 sec   (6512 perm/sec)   p_kst 8.434000e-01   p_cons 4.237000e-01   p_joint 7.004000e-01

Outputting figure to mutsig2_images.part000000000107/MRPL3.3_1087_10000_0.8434_0.4237_0.7004.png
                gene_name: MRPL3
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 62 percent done.
MORC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.572947e-02	ci left: 3.216780e-01	ci right 3.402206e-01	k: 3309	n:10000
KS ci ratio: 4.462512e-03	ci left: 9.849077e-01	ci right 9.894019e-01	k: 9873	n:10000
MORC2   10000 perm   2 sec   (5594 perm/sec)   p_kst 9.873000e-01   p_cons 3.309000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000107/MORC2.2_3005_10000_0.9873_0.3309_1.png
                gene_name: MORC2
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
MORC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.256613e-02	ci left: 5.818905e-01	ci right 6.012561e-01	k: 5916	n:10000
Cons ci ratio: 1.127108e-01	ci left: 1.017865e-01	ci right 1.140430e-01	k: 1078	n:10000
KS ci ratio: 9.670904e-03	ci left: 9.379643e-01	ci right 9.471758e-01	k: 9427	n:10000
MORC3   10000 perm   2 sec   (6029 perm/sec)   p_kst 9.427000e-01   p_cons 1.078000e-01   p_joint 5.916000e-01

Joint ci ratio: 9.583529e-03	ci left: 8.888881e-01	ci right 8.974972e-01	k: 17865	n:20000
Cons ci ratio: 7.587147e-02	ci left: 1.132647e-01	ci right 1.222468e-01	k: 2354	n:20000
KS ci ratio: 6.927286e-03	ci left: 9.379013e-01	ci right 9.444697e-01	k: 18825	n:20000
MORC3   20000 perm   4 sec   (5346 perm/sec)   p_kst 9.412500e-01   p_cons 1.177000e-01   p_joint 8.932500e-01

Outputting figure to mutsig2_images.part000000000107/MORC3.2_2888_20000_0.94125_0.1177_0.89325.png
                gene_name: MORC3
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 68 percent done.
MOSC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.220289e-01	ci left: 1.224928e-02	ci right 1.703957e-02	k: 145	n:10000
Cons ci ratio: 2.607453e-01	ci left: 1.921493e-02	ci right 2.506805e-02	k: 220	n:10000
KS ci ratio: 1.172700e-01	ci left: 9.457666e-02	ci right 1.064572e-01	k: 1004	n:10000
MOSC2   10000 perm   2 sec   (6121 perm/sec)   p_kst 1.004000e-01   p_cons 2.200000e-02   p_joint 1.450000e-02

Joint ci ratio: 2.313597e-01	ci left: 1.251190e-02	ci right 1.583155e-02	k: 282	n:20000
Cons ci ratio: 1.820756e-01	ci left: 2.058483e-02	ci right 2.475554e-02	k: 452	n:20000
KS ci ratio: 8.350250e-02	ci left: 9.509059e-02	ci right 1.034263e-01	k: 1984	n:20000
MOSC2   20000 perm   4 sec   (5425 perm/sec)   p_kst 9.920000e-02   p_cons 2.260000e-02   p_joint 1.410000e-02

Joint ci ratio: 1.379758e-01	ci left: 2.438964e-02	ci right 2.803623e-02	k: 785	n:30000
Cons ci ratio: 1.471762e-01	ci left: 2.139762e-02	ci right 2.482892e-02	k: 692	n:30000
KS ci ratio: 6.747149e-02	ci left: 9.771078e-02	ci right 1.045667e-01	k: 3033	n:30000
MOSC2   30000 perm   6 sec   (5204 perm/sec)   p_kst 1.011000e-01   p_cons 2.306667e-02   p_joint 2.616667e-02

Joint ci ratio: 1.247226e-01	ci left: 2.259499e-02	ci right 2.562464e-02	k: 963	n:40000
Cons ci ratio: 1.291134e-01	ci left: 2.106890e-02	ci right 2.400098e-02	k: 900	n:40000
KS ci ratio: 5.872605e-02	ci left: 9.727404e-02	ci right 1.031841e-01	k: 4008	n:40000
MOSC2   40000 perm   8 sec   (5045 perm/sec)   p_kst 1.002000e-01   p_cons 2.250000e-02   p_joint 2.407500e-02

Joint ci ratio: 1.125647e-01	ci left: 2.234550e-02	ci right 2.503019e-02	k: 1183	n:50000
Cons ci ratio: 1.168297e-01	ci left: 2.073210e-02	ci right 2.332381e-02	k: 1100	n:50000
KS ci ratio: 5.260945e-02	ci left: 9.730465e-02	ci right 1.025819e-01	k: 4996	n:50000
MOSC2   50000 perm   10 sec   (4911 perm/sec)   p_kst 9.992000e-02   p_cons 2.200000e-02   p_joint 2.366000e-02

Joint ci ratio: 1.020168e-01	ci left: 2.279011e-02	ci right 2.525623e-02	k: 1440	n:60000
Cons ci ratio: 1.058828e-01	ci left: 2.114957e-02	ci right 2.353028e-02	k: 1339	n:60000
KS ci ratio: 4.782832e-02	ci left: 9.827014e-02	ci right 1.031019e-01	k: 6040	n:60000
MOSC2   60000 perm   13 sec   (4783 perm/sec)   p_kst 1.006667e-01   p_cons 2.231667e-02   p_joint 2.400000e-02

Joint ci ratio: 8.894236e-02	ci left: 2.579781e-02	ci right 2.821304e-02	k: 1889	n:70000
Cons ci ratio: 9.756150e-02	ci left: 2.144195e-02	ci right 2.365502e-02	k: 1577	n:70000
KS ci ratio: 4.418236e-02	ci left: 9.884792e-02	ci right 1.033281e-01	k: 7075	n:70000
MOSC2   70000 perm   15 sec   (4698 perm/sec)   p_kst 1.010714e-01   p_cons 2.252857e-02   p_joint 2.698571e-02

Outputting figure to mutsig2_images.part000000000107/MOSC2.2_1036_70000_0.10107_0.022529_0.026986.png
                gene_name: MOSC2
               theta_stop: 0.098 
                    nperm: 70000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.099 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.023 
      ci_cons_bounds_left: 0.021 
     ci_cons_bounds_right: 0.024 
                  p_joint: 0.027 
     ci_joint_bounds_left: 0.026 
    ci_joint_bounds_right: 0.028 

Current progress: 71 percent done.
MOSPD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.518041e-02	ci left: 3.260462e-01	ci right 3.446498e-01	k: 3353	n:10000
Cons ci ratio: 2.325932e-02	ci left: 7.308797e-01	ci right 7.481806e-01	k: 7396	n:10000
KS ci ratio: 7.537082e-02	ci left: 2.048126e-01	ci right 2.209550e-01	k: 2128	n:10000
MOSPD2   10000 perm   2 sec   (6316 perm/sec)   p_kst 2.128000e-01   p_cons 7.396000e-01   p_joint 3.353000e-01

Outputting figure to mutsig2_images.part000000000107/MOSPD2.2_1617_10000_0.2128_0.7396_0.3353.png
                gene_name: MOSPD2
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 74 percent done.
MOSPD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.753709e-03	ci left: 9.830684e-01	ci right 9.878427e-01	k: 9856	n:10000
Cons ci ratio: 7.805671e-02	ci left: 1.934789e-01	ci right 2.092954e-01	k: 2013	n:10000
KS ci ratio: 3.788368e-02	ci left: 5.071521e-01	ci right 5.268380e-01	k: 5170	n:10000
MOSPD3   10000 perm   1 sec   (6904 perm/sec)   p_kst 5.170000e-01   p_cons 2.013000e-01   p_joint 9.856000e-01

Outputting figure to mutsig2_images.part000000000107/MOSPD3.2_728_10000_0.517_0.2013_0.9856.png
                gene_name: MOSPD3
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 76 percent done.
MOV10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.497140e-03	ci left: 9.902747e-01	ci right 9.938297e-01	k: 9922	n:10000
Cons ci ratio: 3.019175e-03	ci left: 9.925085e-01	ci right 9.955930e-01	k: 9942	n:10000
KS ci ratio: 2.182305e-02	ci left: 7.549442e-01	ci right 7.717021e-01	k: 7634	n:10000
MOV10   10000 perm   2 sec   (5844 perm/sec)   p_kst 7.634000e-01   p_cons 9.942000e-01   p_joint 9.922000e-01

Outputting figure to mutsig2_images.part000000000107/MOV10.2_3092_10000_0.7634_0.9942_0.9922.png
                gene_name: MOV10
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 79 percent done.
MOXD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.007393e-02	ci left: 4.790570e-01	ci right 4.987494e-01	k: 4889	n:10000
Cons ci ratio: 5.465244e-02	ci left: 3.303159e-01	ci right 3.489775e-01	k: 3396	n:10000
KS ci ratio: 4.213329e-02	ci left: 4.540875e-01	ci right 4.737336e-01	k: 4639	n:10000
MOXD1   10000 perm   2 sec   (6242 perm/sec)   p_kst 4.639000e-01   p_cons 3.396000e-01   p_joint 4.889000e-01

Outputting figure to mutsig2_images.part000000000107/MOXD1.2_1890_10000_0.4639_0.3396_0.4889.png
                gene_name: MOXD1
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 82 percent done.
MPHOSPH8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.809562e-02	ci left: 6.512237e-01	ci right 6.698827e-01	k: 6606	n:10000
Cons ci ratio: 1.418244e-02	ci left: 8.778686e-01	ci right 8.905067e-01	k: 8843	n:10000
KS ci ratio: 3.325811e-02	ci left: 5.716584e-01	ci right 5.910942e-01	k: 5814	n:10000
MPHOSPH8   10000 perm   2 sec   (6155 perm/sec)   p_kst 5.814000e-01   p_cons 8.843000e-01   p_joint 6.606000e-01

Outputting figure to mutsig2_images.part000000000107/MPHOSPH8.2_2639_10000_0.5814_0.8843_0.6606.png
                gene_name: MPHOSPH8
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 85 percent done.
MPL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.122836e-03	ci left: 9.805929e-01	ci right 9.857201e-01	k: 9833	n:10000
Cons ci ratio: 2.485708e-02	ci left: 7.042245e-01	ci right 7.220512e-01	k: 7132	n:10000
KS ci ratio: 2.468708e-02	ci left: 7.070498e-01	ci right 7.248243e-01	k: 7160	n:10000
MPL   10000 perm   2 sec   (6159 perm/sec)   p_kst 7.160000e-01   p_cons 7.132000e-01   p_joint 9.833000e-01

Outputting figure to mutsig2_images.part000000000107/MPL.2_1956_10000_0.716_0.7132_0.9833.png
                gene_name: MPL
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 88 percent done.
MPP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.074454e-02	ci left: 6.094987e-01	ci right 6.286319e-01	k: 6191	n:10000
Cons ci ratio: 3.696871e-02	ci left: 5.193596e-01	ci right 5.390234e-01	k: 5292	n:10000
KS ci ratio: 4.254207e-02	ci left: 4.492961e-01	ci right 4.689277e-01	k: 4591	n:10000
MPP3   10000 perm   2 sec   (6199 perm/sec)   p_kst 4.591000e-01   p_cons 5.292000e-01   p_joint 6.191000e-01

Outputting figure to mutsig2_images.part000000000107/MPP3.2_1830_10000_0.4591_0.5292_0.6191.png
                gene_name: MPP3
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 91 percent done.
MRAS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.881014e-02	ci left: 3.824141e-01	ci right 4.016488e-01	k: 3920	n:10000
KS ci ratio: 9.982218e-02	ci left: 1.268913e-01	ci right 1.403229e-01	k: 1335	n:10000
MRAS   10000 perm   1 sec   (6963 perm/sec)   p_kst 1.335000e-01   p_cons 3.920000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000107/MRAS.2_647_10000_0.1335_0.392_1.png
                gene_name: MRAS
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
MRGPRD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.776400e-03	ci left: 9.888388e-01	ci right 9.926671e-01	k: 9909	n:10000
Cons ci ratio: 4.244799e-02	ci left: 4.503941e-01	ci right 4.700291e-01	k: 4602	n:10000
KS ci ratio: 3.335384e-02	ci left: 5.702543e-01	ci right 5.896991e-01	k: 5800	n:10000
MRGPRD   10000 perm   1 sec   (6694 perm/sec)   p_kst 5.800000e-01   p_cons 4.602000e-01   p_joint 9.909000e-01

Outputting figure to mutsig2_images.part000000000107/MRGPRD.2_969_10000_0.58_0.4602_0.9909.png
                gene_name: MRGPRD
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 97 percent done.
MRP63
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.863152e-02	ci left: 1.563004e-01	ci right 1.708961e-01	k: 1635	n:10000
Cons ci ratio: 7.494614e-02	ci left: 2.066861e-01	ci right 2.228804e-01	k: 2147	n:10000
KS ci ratio: 9.792711e-02	ci left: 1.312962e-01	ci right 1.449153e-01	k: 1380	n:10000
MRP63   10000 perm   1 sec   (7532 perm/sec)   p_kst 1.380000e-01   p_cons 2.147000e-01   p_joint 1.635000e-01

Outputting figure to mutsig2_images.part000000000107/MRP63.2_313_10000_0.138_0.2147_0.1635.png
                gene_name: MRP63
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000107
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 107 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1651>
Subject: Job 8004279: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1651>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000108> was used as the working directory.
Started at Sun Nov 11 15:08:44 2012
Results reported at Sun Nov 11 15:14:35 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000108.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000108.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 108  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000108.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    381.37 sec.
    Max Memory :      4783 MB
    Max Swap   :      7124 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
108
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 108
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 108: processing genes 9681 - 9771
Calculating significance of each gene.
Using projection method.
9681	MRPL30	1.590424e-01
9682	MRPL32	1
9683	MRPL33	1
9684	MRPL34	5.703303e-02
9685	MRPL35	1
9686	MRPL36	3.586226e-02
9687	MRPL37	6.534235e-01
9688	MRPL38	1
9689	MRPL39	1
9690	MRPL4	6.557106e-01
9691	MRPL40	1
9692	MRPL41	2.871311e-01
9693	MRPL42	4.674815e-01
9694	MRPL43	1
9695	MRPL44	7.305533e-01
9696	MRPL45	1
9697	MRPL46	5.441534e-01
9698	MRPL47	1.618899e-01
9699	MRPL48	1
9700	MRPL49	1
9701	MRPL50	3.838047e-01
9702	MRPL51	2.058666e-01
9703	MRPL52	1
9704	MRPL53	1
9705	MRPL54	1
9706	MRPL55	2.930312e-01
9707	MRPL9	3.573173e-01
9708	MRPS10	1
9709	MRPS11	1
9710	MRPS12	1
9711	MRPS14	6.781065e-02
9712	MRPS15	1
9713	MRPS16	1
9714	MRPS17	1
9715	MRPS18A	1
9716	MRPS18B	1
9717	MRPS18C	1
9718	MRPS2	1
9719	MRPS21	1
9720	MRPS22	1
9721	MRPS23	1
9722	MRPS24	2.524708e-01
9723	MRPS25	1
9724	MRPS26	1
9725	MRPS27	6.322223e-01
9726	MRPS28	7.307257e-02
9727	MRPS30	1
9728	MRPS31	5.010146e-01
9729	MRPS33	1
9730	MRPS34	1
9731	MRPS35	5.061741e-01
9732	MRPS36	1
9733	MRPS5	8.094397e-01
9734	MRPS6	3.642879e-01
9735	MRPS7	1
9736	MRPS9	4.947790e-01
9737	MRRF	2.491734e-01
9738	MRS2	4.063246e-01
9739	MRTO4	1
9740	MRVI1	8.203036e-01
9741	MS4A1	3.139048e-01
9742	MS4A10	4.364109e-01
9743	MS4A12	1
9744	MS4A13	9.828579e-02
9745	MS4A14	1.106382e-05
9746	MS4A15	2.867340e-01
9747	MS4A2	2.814322e-02
9748	MS4A3	1.208808e-02
9749	MS4A4A	1.996714e-01
9750	MS4A5	1
9751	MS4A6A	1.515850e-02
9752	MS4A6E	1.200339e-01
9753	MS4A7	8.657442e-02
9754	MS4A8B	4.138619e-01
9755	MSC	1
9756	MSGN1	5.479151e-01
9757	MSH2	9.620379e-01
9758	MSH3	6.442314e-01
9759	MSH4	1
9760	MSH5	7.099247e-01
9761	MSH6	8.011508e-01
9762	MSI1	3.564950e-01
9763	MSI2	4.249241e-01
9764	MSL1	7.781512e-01
9765	MSL2	8.791523e-01
9766	MSL3	1.381043e-01
9767	MSL3L2	1
9768	MSLN	5.986919e-01
9769	MSLNL	2.740150e-01
9770	MSMB	2.837719e-01
9771	MSMP	1.289927e-01
Done

Running MutSig 2:
Scatter job 108: processing genes 9681 - 9771
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
MS4A14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.129592e-02	ci left: 4.640723e-01	ci right 4.837429e-01	k: 4739	n:10000
Cons ci ratio: 1.022656e-01	ci left: 1.215110e-01	ci right 1.347065e-01	k: 1280	n:10000
KS ci ratio: 1.282976e-02	ci left: 8.973393e-01	ci right 9.090246e-01	k: 9033	n:10000
MS4A14   10000 perm   2 sec   (4490 perm/sec)   p_kst 9.033000e-01   p_cons 1.280000e-01   p_joint 4.739000e-01

Joint ci ratio: 3.629784e-02	ci left: 3.616097e-01	ci right 3.750286e-01	k: 7366	n:20000
Cons ci ratio: 7.420271e-02	ci left: 1.178879e-01	ci right 1.270222e-01	k: 2448	n:20000
KS ci ratio: 9.217779e-03	ci left: 8.962172e-01	ci right 9.045660e-01	k: 18009	n:20000
MS4A14   20000 perm   7 sec   (3052 perm/sec)   p_kst 9.004500e-01   p_cons 1.224000e-01   p_joint 3.683000e-01

Outputting figure to mutsig2_images.part000000000108/MS4A14.13_2060_20000_0.90045_0.1224_0.3683.png
                gene_name: MS4A14
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 3 percent done.
MSH4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.764925e-02	ci left: 5.102534e-01	ci right 5.299348e-01	k: 5201	n:10000
Cons ci ratio: 1.477842e-02	ci left: 8.689718e-01	ci right 8.820086e-01	k: 8756	n:10000
KS ci ratio: 4.700555e-02	ci left: 4.004372e-01	ci right 4.198151e-01	k: 4101	n:10000
MSH4   10000 perm   2 sec   (5142 perm/sec)   p_kst 4.101000e-01   p_cons 8.756000e-01   p_joint 5.201000e-01

Outputting figure to mutsig2_images.part000000000108/MSH4.6_2891_10000_0.4101_0.8756_0.5201.png
                gene_name: MSH4
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 6 percent done.
MSLNL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.945362e-02	ci left: 2.939022e-01	ci right 3.120127e-01	k: 3029	n:10000
Cons ci ratio: 7.357380e-02	ci left: 2.128999e-01	ci right 2.292629e-01	k: 2210	n:10000
KS ci ratio: 5.180519e-02	ci left: 3.545604e-01	ci right 3.735189e-01	k: 3640	n:10000
MSLNL   10000 perm   2 sec   (4999 perm/sec)   p_kst 3.640000e-01   p_cons 2.210000e-01   p_joint 3.029000e-01

Outputting figure to mutsig2_images.part000000000108/MSLNL.6_3226_10000_0.364_0.221_0.3029.png
                gene_name: MSLNL
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 9 percent done.
MS4A6E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.844707e-02	ci left: 1.919029e-01	ci right 2.076724e-01	k: 1997	n:10000
Cons ci ratio: 5.992136e-02	ci left: 2.906312e-01	ci right 3.086857e-01	k: 2996	n:10000
KS ci ratio: 9.792711e-02	ci left: 1.312962e-01	ci right 1.449153e-01	k: 1380	n:10000
MS4A6E   10000 perm   2 sec   (5742 perm/sec)   p_kst 1.380000e-01   p_cons 2.996000e-01   p_joint 1.997000e-01

Outputting figure to mutsig2_images.part000000000108/MS4A6E.5_456_10000_0.138_0.2996_0.1997.png
                gene_name: MS4A6E
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 12 percent done.
MS4A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.026571e-02	ci left: 2.882526e-01	ci right 3.062657e-01	k: 2972	n:10000
Cons ci ratio: 2.207662e-02	ci left: 7.506950e-01	ci right 7.675538e-01	k: 7592	n:10000
KS ci ratio: 8.025848e-02	ci left: 1.848130e-01	ci right 2.003665e-01	k: 1925	n:10000
MS4A2   10000 perm   2 sec   (6270 perm/sec)   p_kst 1.925000e-01   p_cons 7.592000e-01   p_joint 2.972000e-01

Outputting figure to mutsig2_images.part000000000108/MS4A2.4_814_10000_0.1925_0.7592_0.2972.png
                gene_name: MS4A2
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 15 percent done.
MS4A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.945362e-02	ci left: 2.939022e-01	ci right 3.120127e-01	k: 3029	n:10000
Cons ci ratio: 1.116124e-01	ci left: 1.036391e-01	ci right 1.159892e-01	k: 1097	n:10000
KS ci ratio: 1.784267e-02	ci left: 8.208650e-01	ci right 8.357433e-01	k: 8284	n:10000
MS4A3   10000 perm   2 sec   (5517 perm/sec)   p_kst 8.284000e-01   p_cons 1.097000e-01   p_joint 3.029000e-01

Joint ci ratio: 5.043167e-02	ci left: 2.261147e-01	ci right 2.378633e-01	k: 4639	n:20000
Cons ci ratio: 8.118383e-02	ci left: 1.001458e-01	ci right 1.086696e-01	k: 2087	n:20000
KS ci ratio: 1.270037e-02	ci left: 8.211795e-01	ci right 8.317254e-01	k: 16530	n:20000
MS4A3   20000 perm   4 sec   (5206 perm/sec)   p_kst 8.265000e-01   p_cons 1.043500e-01   p_joint 2.319500e-01

Outputting figure to mutsig2_images.part000000000108/MS4A3.4_669_20000_0.8265_0.10435_0.23195.png
                gene_name: MS4A3
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 18 percent done.
MS4A6A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.707555e-02	ci left: 1.975185e-01	ci right 2.134534e-01	k: 2054	n:10000
Cons ci ratio: 3.818054e-02	ci left: 5.032509e-01	ci right 5.229414e-01	k: 5131	n:10000
KS ci ratio: 1.047174e-01	ci left: 1.164278e-01	ci right 1.293928e-01	k: 1228	n:10000
MS4A6A   10000 perm   2 sec   (5967 perm/sec)   p_kst 1.228000e-01   p_cons 5.131000e-01   p_joint 2.054000e-01

Joint ci ratio: 5.736144e-02	ci left: 1.838418e-01	ci right 1.947487e-01	k: 3785	n:20000
Cons ci ratio: 2.662127e-02	ci left: 5.131986e-01	ci right 5.270955e-01	k: 10403	n:20000
KS ci ratio: 7.404775e-02	ci left: 1.183306e-01	ci right 1.274793e-01	k: 2457	n:20000
MS4A6A   20000 perm   4 sec   (5690 perm/sec)   p_kst 1.228500e-01   p_cons 5.201500e-01   p_joint 1.892500e-01

Outputting figure to mutsig2_images.part000000000108/MS4A6A.4_798_20000_0.12285_0.52015_0.18925.png
                gene_name: MS4A6A
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 21 percent done.
MSH3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.890004e-02	ci left: 8.035925e-01	ci right 8.190257e-01	k: 8114	n:10000
Cons ci ratio: 5.927115e-02	ci left: 2.951909e-01	ci right 3.133232e-01	k: 3042	n:10000
KS ci ratio: 2.089762e-02	ci left: 7.704332e-01	ci right 7.868042e-01	k: 7787	n:10000
MSH3   10000 perm   2 sec   (4876 perm/sec)   p_kst 7.787000e-01   p_cons 3.042000e-01   p_joint 8.114000e-01

Outputting figure to mutsig2_images.part000000000108/MSH3.4_3510_10000_0.7787_0.3042_0.8114.png
                gene_name: MSH3
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 24 percent done.
MSH6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.834897e-02	ci left: 5.010505e-01	ci right 5.207431e-01	k: 5109	n:10000
Cons ci ratio: 4.147853e-02	ci left: 4.618753e-01	ci right 4.815412e-01	k: 4717	n:10000
KS ci ratio: 6.642498e-02	ci left: 2.496437e-01	ci right 2.668973e-01	k: 2582	n:10000
MSH6   10000 perm   2 sec   (4889 perm/sec)   p_kst 2.582000e-01   p_cons 4.717000e-01   p_joint 5.109000e-01

Outputting figure to mutsig2_images.part000000000108/MSH6.4_4123_10000_0.2582_0.4717_0.5109.png
                gene_name: MSH6
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 27 percent done.
MSL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.139542e-02	ci left: 4.628739e-01	ci right 4.825420e-01	k: 4727	n:10000
Cons ci ratio: 2.615678e-02	ci left: 6.827458e-01	ci right 7.009424e-01	k: 6919	n:10000
KS ci ratio: 6.413009e-02	ci left: 2.631968e-01	ci right 2.807362e-01	k: 2719	n:10000
MSL3   10000 perm   2 sec   (5525 perm/sec)   p_kst 2.719000e-01   p_cons 6.919000e-01   p_joint 4.727000e-01

Outputting figure to mutsig2_images.part000000000108/MSL3.4_1698_10000_0.2719_0.6919_0.4727.png
                gene_name: MSL3
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 30 percent done.
MS4A7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.350688e-02	ci left: 7.267375e-01	ci right 7.441252e-01	k: 7355	n:10000
KS ci ratio: 1.470375e-02	ci left: 8.700961e-01	ci right 8.830836e-01	k: 8767	n:10000
MS4A7   10000 perm   1 sec   (6982 perm/sec)   p_kst 8.767000e-01   p_cons 7.355000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000108/MS4A7.3_747_10000_0.8767_0.7355_1.png
                gene_name: MS4A7
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 33 percent done.
MS4A8B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.287702e-02	ci left: 5.772755e-01	ci right 5.966738e-01	k: 5870	n:10000
KS ci ratio: 2.175058e-02	ci left: 7.561585e-01	ci right 7.728871e-01	k: 7646	n:10000
MS4A8B   10000 perm   2 sec   (6515 perm/sec)   p_kst 7.646000e-01   p_cons 5.870000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000108/MS4A8B.3_777_10000_0.7646_0.587_1.png
                gene_name: MS4A8B
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 36 percent done.
MSH5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.324394e-02	ci left: 8.914916e-01	ci right 9.034757e-01	k: 8976	n:10000
KS ci ratio: 1.039235e-02	ci left: 9.293697e-01	ci right 9.391755e-01	k: 9344	n:10000
MSH5   10000 perm   2 sec   (5698 perm/sec)   p_kst 9.344000e-01   p_cons 8.976000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000108/MSH5.3_2655_10000_0.9344_0.8976_1.png
                gene_name: MSH5
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 39 percent done.
MSLN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.093336e-02	ci left: 4.684669e-01	ci right 4.881457e-01	k: 4783	n:10000
Cons ci ratio: 2.069749e-02	ci left: 7.737760e-01	ci right 7.900594e-01	k: 7820	n:10000
KS ci ratio: 6.644232e-02	ci left: 2.495448e-01	ci right 2.667963e-01	k: 2581	n:10000
MSLN   10000 perm   2 sec   (6028 perm/sec)   p_kst 2.581000e-01   p_cons 7.820000e-01   p_joint 4.783000e-01

Outputting figure to mutsig2_images.part000000000108/MSLN.3_1957_10000_0.2581_0.782_0.4783.png
                gene_name: MSLN
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 42 percent done.
MRPL30
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.151171e-01	ci left: 9.788810e-02	ci right 1.099437e-01	k: 1038	n:10000
Cons ci ratio: 1.558138e-02	ci left: 8.567172e-01	ci right 8.702703e-01	k: 8636	n:10000
KS ci ratio: 1.466274e-01	ci left: 6.179002e-02	ci right 7.166421e-02	k: 666	n:10000
MRPL30   10000 perm   1 sec   (7256 perm/sec)   p_kst 6.660000e-02   p_cons 8.636000e-01   p_joint 1.038000e-01

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 1.108917e-02	ci left: 8.571931e-01	ci right 8.668014e-01	k: 17241	n:20000
KS ci ratio: 1.024948e-01	ci left: 6.464664e-02	ci right 7.167954e-02	k: 1362	n:20000
MRPL30   20000 perm   3 sec   (6372 perm/sec)   p_kst 6.810000e-02   p_cons 8.620500e-01   p_joint 1

Joint ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
Cons ci ratio: 9.008952e-03	ci left: 8.592934e-01	ci right 8.671028e-01	k: 25897	n:30000
KS ci ratio: 8.343572e-02	ci left: 6.566681e-02	ci right 7.141709e-02	k: 2055	n:30000
MRPL30   30000 perm   5 sec   (6026 perm/sec)   p_kst 6.850000e-02   p_cons 8.632333e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000108/MRPL30.2_506_30000_0.0685_0.86323_1.png
                gene_name: MRPL30
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.069 
        ci_ks_bounds_left: 0.066 
       ci_ks_bounds_right: 0.071 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 45 percent done.
MRPL32
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.973534e-02	ci left: 7.897918e-01	ci right 8.056344e-01	k: 7978	n:10000
KS ci ratio: 1.788029e-02	ci left: 8.202549e-01	ci right 8.351537e-01	k: 8278	n:10000
MRPL32   10000 perm   1 sec   (6991 perm/sec)   p_kst 8.278000e-01   p_cons 7.978000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000108/MRPL32.2_579_10000_0.8278_0.7978_1.png
                gene_name: MRPL32
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 48 percent done.
MRPL36
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.652540e-02	ci left: 6.766995e-01	ci right 6.949921e-01	k: 6859	n:10000
Cons ci ratio: 1.559459e-02	ci left: 8.565131e-01	ci right 8.700745e-01	k: 8634	n:10000
KS ci ratio: 3.345662e-02	ci left: 5.687500e-01	ci right 5.882042e-01	k: 5785	n:10000
MRPL36   10000 perm   1 sec   (7147 perm/sec)   p_kst 5.785000e-01   p_cons 8.634000e-01   p_joint 6.859000e-01

Outputting figure to mutsig2_images.part000000000108/MRPL36.2_316_10000_0.5785_0.8634_0.6859.png
                gene_name: MRPL36
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.69 

Current progress: 52 percent done.
MRPL37
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.749465e-02	ci left: 3.954571e-01	ci right 4.147982e-01	k: 4051	n:10000
KS ci ratio: 2.032688e-02	ci left: 7.799572e-01	ci right 7.960747e-01	k: 7881	n:10000
MRPL37   10000 perm   2 sec   (6614 perm/sec)   p_kst 7.881000e-01   p_cons 4.051000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000108/MRPL37.2_1300_10000_0.7881_0.4051_1.png
                gene_name: MRPL37
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.41 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 55 percent done.
MRPL47
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.363186e-02	ci left: 2.662650e-01	ci right 2.838662e-01	k: 2750	n:10000
Cons ci ratio: 1.795348e-01	ci left: 4.140268e-02	ci right 4.966468e-02	k: 454	n:10000
KS ci ratio: 4.464907e-02	ci left: 4.254529e-01	ci right 4.449849e-01	k: 4352	n:10000
MRPL47   10000 perm   1 sec   (6832 perm/sec)   p_kst 4.352000e-01   p_cons 4.540000e-02   p_joint 2.750000e-01

Joint ci ratio: 5.627305e-02	ci left: 1.897265e-01	ci right 2.007622e-01	k: 3904	n:20000
Cons ci ratio: 1.450070e-01	ci left: 3.268875e-02	ci right 3.784751e-02	k: 704	n:20000
KS ci ratio: 3.155839e-02	ci left: 4.285633e-01	ci right 4.423555e-01	k: 8709	n:20000
MRPL47   20000 perm   3 sec   (6017 perm/sec)   p_kst 4.354500e-01   p_cons 3.520000e-02   p_joint 1.952000e-01

Joint ci ratio: 4.616497e-02	ci left: 1.892742e-01	ci right 1.982518e-01	k: 5812	n:30000
Cons ci ratio: 1.190713e-01	ci left: 3.278697e-02	ci right 3.697040e-02	k: 1045	n:30000
KS ci ratio: 2.564355e-02	ci left: 4.322089e-01	ci right 4.434698e-01	k: 13135	n:30000
MRPL47   30000 perm   5 sec   (5706 perm/sec)   p_kst 4.378333e-01   p_cons 3.483333e-02   p_joint 1.937333e-01

Joint ci ratio: 1.759173e-02	ci left: 5.489373e-01	ci right 5.587049e-01	k: 22153	n:40000
Cons ci ratio: 1.032215e-01	ci left: 3.300092e-02	ci right 3.661702e-02	k: 1391	n:40000
KS ci ratio: 2.215124e-02	ci left: 4.342286e-01	ci right 4.439802e-01	k: 17564	n:40000
MRPL47   40000 perm   7 sec   (5501 perm/sec)   p_kst 4.391000e-01   p_cons 3.477500e-02   p_joint 5.538250e-01

Joint ci ratio: 1.652943e-02	ci left: 5.249734e-01	ci right 5.337432e-01	k: 26468	n:50000
Cons ci ratio: 9.240687e-02	ci left: 3.313241e-02	ci right 3.636190e-02	k: 1736	n:50000
KS ci ratio: 1.983055e-02	ci left: 4.343042e-01	ci right 4.430230e-01	k: 21933	n:50000
MRPL47   50000 perm   9 sec   (5340 perm/sec)   p_kst 4.386600e-01   p_cons 3.472000e-02   p_joint 5.293600e-01

Outputting figure to mutsig2_images.part000000000108/MRPL47.2_781_50000_0.43866_0.03472_0.52936.png
                gene_name: MRPL47
               theta_stop: 0.092 
                    nperm: 50000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.035 
      ci_cons_bounds_left: 0.033 
     ci_cons_bounds_right: 0.036 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.53 

Current progress: 58 percent done.
MRPS14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.945635e-01	ci left: 1.483579e-02	ci right 2.005075e-02	k: 173	n:10000
Cons ci ratio: 5.100929e-02	ci left: 3.617196e-01	ci right 3.807555e-01	k: 3712	n:10000
KS ci ratio: 2.945635e-01	ci left: 1.483579e-02	ci right 2.005075e-02	k: 173	n:10000
MRPS14   10000 perm   1 sec   (7024 perm/sec)   p_kst 1.730000e-02   p_cons 3.712000e-01   p_joint 1.730000e-02

Joint ci ratio: 2.092125e-01	ci left: 1.544355e-02	ci right 1.909873e-02	k: 344	n:20000
Cons ci ratio: 3.478675e-02	ci left: 3.815373e-01	ci right 3.950952e-01	k: 7766	n:20000
KS ci ratio: 2.092125e-01	ci left: 1.544355e-02	ci right 1.909873e-02	k: 344	n:20000
MRPS14   20000 perm   3 sec   (6171 perm/sec)   p_kst 1.720000e-02   p_cons 3.883000e-01   p_joint 1.720000e-02

Joint ci ratio: 1.684372e-01	ci left: 1.623808e-02	ci right 1.925634e-02	k: 531	n:30000
Cons ci ratio: 2.826914e-02	ci left: 3.850401e-01	ci right 3.961145e-01	k: 11717	n:30000
KS ci ratio: 1.684372e-01	ci left: 1.623808e-02	ci right 1.925634e-02	k: 531	n:30000
MRPS14   30000 perm   5 sec   (5839 perm/sec)   p_kst 1.770000e-02   p_cons 3.905667e-01   p_joint 1.770000e-02

Joint ci ratio: 1.473949e-01	ci left: 1.609305e-02	ci right 1.867770e-02	k: 694	n:40000
Cons ci ratio: 2.448305e-02	ci left: 3.857645e-01	ci right 3.953514e-01	k: 15622	n:40000
KS ci ratio: 1.473949e-01	ci left: 1.609305e-02	ci right 1.867770e-02	k: 694	n:40000
MRPS14   40000 perm   7 sec   (5628 perm/sec)   p_kst 1.735000e-02   p_cons 3.905500e-01   p_joint 1.735000e-02

Joint ci ratio: 1.311256e-01	ci left: 1.640745e-02	ci right 1.872905e-02	k: 877	n:50000
Cons ci ratio: 2.191463e-02	ci left: 3.859208e-01	ci right 3.944919e-01	k: 19510	n:50000
KS ci ratio: 1.311256e-01	ci left: 1.640745e-02	ci right 1.872905e-02	k: 877	n:50000
MRPS14   50000 perm   9 sec   (5454 perm/sec)   p_kst 1.754000e-02   p_cons 3.902000e-01   p_joint 1.754000e-02

Joint ci ratio: 1.188767e-01	ci left: 1.674087e-02	ci right 1.887281e-02	k: 1067	n:60000
Cons ci ratio: 2.002218e-02	ci left: 3.858947e-01	ci right 3.937160e-01	k: 23388	n:60000
KS ci ratio: 1.188767e-01	ci left: 1.674087e-02	ci right 1.887281e-02	k: 1067	n:60000
MRPS14   60000 perm   11 sec   (5311 perm/sec)   p_kst 1.778333e-02   p_cons 3.898000e-01   p_joint 1.778333e-02

Joint ci ratio: 1.102841e-01	ci left: 1.674998e-02	ci right 1.871886e-02	k: 1240	n:70000
Cons ci ratio: 1.856266e-02	ci left: 3.855286e-01	ci right 3.927663e-01	k: 27240	n:70000
KS ci ratio: 1.102841e-01	ci left: 1.674998e-02	ci right 1.871886e-02	k: 1240	n:70000
MRPS14   70000 perm   14 sec   (5183 perm/sec)   p_kst 1.771429e-02   p_cons 3.891429e-01   p_joint 1.771429e-02

Joint ci ratio: 1.033949e-01	ci left: 1.673664e-02	ci right 1.857358e-02	k: 1411	n:80000
Cons ci ratio: 1.733713e-02	ci left: 3.864931e-01	ci right 3.932649e-01	k: 31190	n:80000
KS ci ratio: 1.033949e-01	ci left: 1.673664e-02	ci right 1.857358e-02	k: 1411	n:80000
MRPS14   80000 perm   16 sec   (5064 perm/sec)   p_kst 1.763750e-02   p_cons 3.898750e-01   p_joint 1.763750e-02

Joint ci ratio: 9.663371e-02	ci left: 1.708717e-02	ci right 1.883299e-02	k: 1615	n:90000
Cons ci ratio: 1.634402e-02	ci left: 3.867338e-01	ci right 3.931177e-01	k: 35093	n:90000
KS ci ratio: 9.663371e-02	ci left: 1.708717e-02	ci right 1.883299e-02	k: 1615	n:90000
MRPS14   90000 perm   18 sec   (4956 perm/sec)   p_kst 1.794444e-02   p_cons 3.899222e-01   p_joint 1.794444e-02

Outputting figure to mutsig2_images.part000000000108/MRPS14.2_399_90000_0.017944_0.38992_0.017944.png
                gene_name: MRPS14
               theta_stop: 0.097 
                    nperm: 90000 
                     p_ks: 0.018 
        ci_ks_bounds_left: 0.017 
       ci_ks_bounds_right: 0.019 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.018 
     ci_joint_bounds_left: 0.017 
    ci_joint_bounds_right: 0.019 

Current progress: 61 percent done.
MRPS28
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.092823e-03	ci left: 9.733385e-01	ci right 9.793796e-01	k: 9765	n:10000
Cons ci ratio: 6.543425e-02	ci left: 2.553802e-01	ci right 2.727574e-01	k: 2640	n:10000
KS ci ratio: 2.299980e-02	ci left: 7.352249e-01	ci right 7.524328e-01	k: 7439	n:10000
MRPS28   10000 perm   1 sec   (6827 perm/sec)   p_kst 7.439000e-01   p_cons 2.640000e-01   p_joint 9.765000e-01

Outputting figure to mutsig2_images.part000000000108/MRPS28.2_576_10000_0.7439_0.264_0.9765.png
                gene_name: MRPS28
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 64 percent done.
MRPS30
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.367563e-03	ci left: 9.523170e-01	ci right 9.604144e-01	k: 9565	n:10000
Cons ci ratio: 2.702786e-01	ci left: 1.781300e-02	ci right 2.347108e-02	k: 205	n:10000
KS ci ratio: 1.426541e-02	ci left: 8.766408e-01	ci right 8.893352e-01	k: 8831	n:10000
MRPS30   10000 perm   2 sec   (6425 perm/sec)   p_kst 8.831000e-01   p_cons 2.050000e-02   p_joint 9.565000e-01

Joint ci ratio: 4.440982e-02	ci left: 2.740826e-01	ci right 2.865814e-01	k: 5606	n:20000
Cons ci ratio: 1.845928e-01	ci left: 2.001183e-02	ci right 2.412875e-02	k: 440	n:20000
KS ci ratio: 9.929139e-03	ci left: 8.818192e-01	ci right 8.906681e-01	k: 17726	n:20000
MRPS30   20000 perm   4 sec   (5619 perm/sec)   p_kst 8.863000e-01   p_cons 2.200000e-02   p_joint 2.803000e-01

Joint ci ratio: 1.730035e-02	ci left: 6.256777e-01	ci right 6.366302e-01	k: 18935	n:30000
Cons ci ratio: 1.507789e-01	ci left: 2.036990e-02	ci right 2.372355e-02	k: 660	n:30000
KS ci ratio: 8.040966e-03	ci left: 8.843095e-01	ci right 8.914819e-01	k: 26638	n:30000
MRPS30   30000 perm   6 sec   (5365 perm/sec)   p_kst 8.879333e-01   p_cons 2.200000e-02   p_joint 6.311667e-01

Joint ci ratio: 2.365856e-02	ci left: 4.021550e-01	ci right 4.118085e-01	k: 16279	n:40000
Cons ci ratio: 1.323032e-01	ci left: 2.005253e-02	ci right 2.291752e-02	k: 858	n:40000
KS ci ratio: 6.984805e-03	ci left: 8.841857e-01	ci right 8.904080e-01	k: 35493	n:40000
MRPS30   40000 perm   8 sec   (5149 perm/sec)   p_kst 8.873250e-01   p_cons 2.145000e-02   p_joint 4.069750e-01

Joint ci ratio: 1.280680e-02	ci left: 6.478261e-01	ci right 6.561962e-01	k: 32601	n:50000
Cons ci ratio: 1.184345e-01	ci left: 2.016881e-02	ci right 2.272717e-02	k: 1071	n:50000
KS ci ratio: 6.244357e-03	ci left: 8.846170e-01	ci right 8.901780e-01	k: 44371	n:50000
MRPS30   50000 perm   10 sec   (5001 perm/sec)   p_kst 8.874200e-01   p_cons 2.142000e-02   p_joint 6.520200e-01

Joint ci ratio: 9.840859e-03	ci left: 7.220272e-01	ci right 7.291843e-01	k: 43537	n:60000
Cons ci ratio: 1.069074e-01	ci left: 2.074376e-02	ci right 2.310280e-02	k: 1314	n:60000
KS ci ratio: 5.759126e-03	ci left: 8.827737e-01	ci right 8.878889e-01	k: 53121	n:60000
MRPS30   60000 perm   12 sec   (4874 perm/sec)   p_kst 8.853500e-01   p_cons 2.190000e-02   p_joint 7.256167e-01

Joint ci ratio: 9.475236e-03	ci left: 7.063504e-01	ci right 7.130894e-01	k: 49681	n:70000
Cons ci ratio: 9.875249e-02	ci left: 2.092608e-02	ci right 2.311379e-02	k: 1540	n:70000
KS ci ratio: 5.329822e-03	ci left: 8.830460e-01	ci right 8.877792e-01	k: 61980	n:70000
MRPS30   70000 perm   15 sec   (4762 perm/sec)   p_kst 8.854286e-01   p_cons 2.200000e-02   p_joint 7.097286e-01

Outputting figure to mutsig2_images.part000000000108/MRPS30.2_1340_70000_0.88543_0.022_0.70973.png
                gene_name: MRPS30
               theta_stop: 0.099 
                    nperm: 70000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.022 
      ci_cons_bounds_left: 0.021 
     ci_cons_bounds_right: 0.023 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.71 

Current progress: 67 percent done.
MRPS31
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.971200e-03	ci left: 9.344406e-01	ci right 9.439015e-01	k: 9393	n:10000
Cons ci ratio: 2.108542e-02	ci left: 7.672937e-01	ci right 7.837455e-01	k: 7756	n:10000
KS ci ratio: 5.840080e-02	ci left: 3.014375e-01	ci right 3.196729e-01	k: 3105	n:10000
MRPS31   10000 perm   2 sec   (6543 perm/sec)   p_kst 3.105000e-01   p_cons 7.756000e-01   p_joint 9.393000e-01

Outputting figure to mutsig2_images.part000000000108/MRPS31.2_1216_10000_0.3105_0.7756_0.9393.png
                gene_name: MRPS31
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 70 percent done.
MRPS9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.334384e-02	ci left: 7.294651e-01	ci right 7.467959e-01	k: 7382	n:10000
Cons ci ratio: 6.017928e-02	ci left: 2.888472e-01	ci right 3.068707e-01	k: 2978	n:10000
KS ci ratio: 5.796730e-02	ci left: 3.046112e-01	ci right 3.228974e-01	k: 3137	n:10000
MRPS9   10000 perm   2 sec   (6648 perm/sec)   p_kst 3.137000e-01   p_cons 2.978000e-01   p_joint 7.382000e-01

Outputting figure to mutsig2_images.part000000000108/MRPS9.2_1235_10000_0.3137_0.2978_0.7382.png
                gene_name: MRPS9
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 73 percent done.
MRRF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.219686e-02	ci left: 5.874096e-01	ci right 6.067338e-01	k: 5971	n:10000
Cons ci ratio: 2.090368e-02	ci left: 7.703319e-01	ci right 7.867055e-01	k: 7786	n:10000
KS ci ratio: 3.919412e-02	ci left: 4.901514e-01	ci right 5.098486e-01	k: 5000	n:10000
MRRF   10000 perm   1 sec   (6897 perm/sec)   p_kst 5.000000e-01   p_cons 7.786000e-01   p_joint 5.971000e-01

Outputting figure to mutsig2_images.part000000000108/MRRF.2_813_10000_0.5_0.7786_0.5971.png
                gene_name: MRRF
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 76 percent done.
MRS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.590211e-03	ci left: 9.388977e-01	ci right 9.480418e-01	k: 9436	n:10000
Cons ci ratio: 5.053201e-02	ci left: 3.660957e-01	ci right 3.851768e-01	k: 3756	n:10000
KS ci ratio: 7.070558e-02	ci left: 2.267179e-01	ci right 2.434367e-01	k: 2350	n:10000
MRS2   10000 perm   2 sec   (6412 perm/sec)   p_kst 2.350000e-01   p_cons 3.756000e-01   p_joint 9.436000e-01

Outputting figure to mutsig2_images.part000000000108/MRS2.2_1376_10000_0.235_0.3756_0.9436.png
                gene_name: MRS2
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 79 percent done.
MRVI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.273648e-03	ci left: 9.630998e-01	ci right 9.702249e-01	k: 9668	n:10000
Cons ci ratio: 4.095797e-02	ci left: 4.681673e-01	ci right 4.878455e-01	k: 4780	n:10000
KS ci ratio: 1.135904e-02	ci left: 9.171884e-01	ci right 9.277639e-01	k: 9226	n:10000
MRVI1   10000 perm   2 sec   (5744 perm/sec)   p_kst 9.226000e-01   p_cons 4.780000e-01   p_joint 9.668000e-01

Outputting figure to mutsig2_images.part000000000108/MRVI1.2_2792_10000_0.9226_0.478_0.9668.png
                gene_name: MRVI1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 82 percent done.
MS4A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.130330e-02	ci left: 7.636486e-01	ci right 7.801928e-01	k: 7720	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
MS4A1   10000 perm   2 sec   (6531 perm/sec)   p_kst 1   p_cons 7.720000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000108/MS4A1.2_918_10000_1_0.772_1.png
                gene_name: MS4A1
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 85 percent done.
MS4A12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.189480e-02	ci left: 3.537651e-01	ci right 3.727147e-01	k: 3632	n:10000
Cons ci ratio: 6.129090e-02	ci left: 2.813167e-01	ci right 2.992056e-01	k: 2902	n:10000
KS ci ratio: 6.096528e-02	ci left: 2.834963e-01	ci right 3.014247e-01	k: 2924	n:10000
MS4A12   10000 perm   1 sec   (6731 perm/sec)   p_kst 2.924000e-01   p_cons 2.902000e-01   p_joint 3.632000e-01

Outputting figure to mutsig2_images.part000000000108/MS4A12.2_828_10000_0.2924_0.2902_0.3632.png
                gene_name: MS4A12
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 88 percent done.
MS4A13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.636594e-02	ci left: 8.444801e-01	ci right 8.585145e-01	k: 8516	n:10000
KS ci ratio: 4.019438e-02	ci left: 4.775582e-01	ci right 4.972492e-01	k: 4874	n:10000
MS4A13   10000 perm   1 sec   (7194 perm/sec)   p_kst 4.874000e-01   p_cons 8.516000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000108/MS4A13.2_479_10000_0.4874_0.8516_1.png
                gene_name: MS4A13
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
MS4A4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.905301e-03	ci left: 9.465858e-01	ci right 9.551491e-01	k: 9510	n:10000
Cons ci ratio: 4.555967e-02	ci left: 4.155831e-01	ci right 4.350604e-01	k: 4253	n:10000
KS ci ratio: 2.768949e-02	ci left: 6.577660e-01	ci right 6.763366e-01	k: 6671	n:10000
MS4A4A   10000 perm   1 sec   (6719 perm/sec)   p_kst 6.671000e-01   p_cons 4.253000e-01   p_joint 9.510000e-01

Outputting figure to mutsig2_images.part000000000108/MS4A4A.2_748_10000_0.6671_0.4253_0.951.png
                gene_name: MS4A4A
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 94 percent done.
MSI2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.426517e-02	ci left: 1.703508e-01	ci right 1.854373e-01	k: 1778	n:10000
Cons ci ratio: 6.794962e-02	ci left: 2.411415e-01	ci right 2.582045e-01	k: 2496	n:10000
KS ci ratio: 1.370683e-01	ci left: 7.039603e-02	ci right 8.085279e-02	k: 755	n:10000
MSI2   10000 perm   2 sec   (6546 perm/sec)   p_kst 7.550000e-02   p_cons 2.496000e-01   p_joint 1.778000e-01

Joint ci ratio: 5.804321e-02	ci left: 1.802823e-01	ci right 1.911093e-01	k: 3713	n:20000
Cons ci ratio: 4.821531e-02	ci left: 2.423740e-01	ci right 2.543992e-01	k: 4967	n:20000
KS ci ratio: 9.559662e-02	ci left: 7.383094e-02	ci right 8.129243e-02	k: 1550	n:20000
MSI2   20000 perm   3 sec   (5768 perm/sec)   p_kst 7.750000e-02   p_cons 2.483500e-01   p_joint 1.856500e-01

Outputting figure to mutsig2_images.part000000000108/MSI2.2_1134_20000_0.0775_0.24835_0.18565.png
                gene_name: MSI2
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.077 
        ci_ks_bounds_left: 0.074 
       ci_ks_bounds_right: 0.081 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 97 percent done.
MSMP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.120255e-02	ci left: 6.024681e-01	ci right 6.216665e-01	k: 6121	n:10000
Cons ci ratio: 3.546029e-02	ci left: 5.400858e-01	ci right 5.596852e-01	k: 5499	n:10000
KS ci ratio: 2.923811e-02	ci left: 6.330162e-01	ci right 6.519008e-01	k: 6425	n:10000
MSMP   10000 perm   1 sec   (6914 perm/sec)   p_kst 6.425000e-01   p_cons 5.499000e-01   p_joint 6.121000e-01

Outputting figure to mutsig2_images.part000000000108/MSMP.2_432_10000_0.6425_0.5499_0.6121.png
                gene_name: MSMP
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000108
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 108 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1650>
Subject: Job 8004283: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1650>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000109> was used as the working directory.
Started at Sun Nov 11 15:08:53 2012
Results reported at Sun Nov 11 16:49:23 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000109.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000109.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 109  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000109.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   6136.26 sec.
    Max Memory :      8361 MB
    Max Swap   :     10782 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
109
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 109
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 109: processing genes 9772 - 9861
Calculating significance of each gene.
Using projection method.
9772	MSN	2.128295e-01
9773	MSR1	1.054098e-01
9774	MSRA	1
9775	MSRB2	1
9776	MSRB3	1
9777	MST1	8.717354e-01
9778	MST1R	9.296216e-01
9779	MST4	2.976573e-01
9780	MSTN	1
9781	MSTO1	1
9782	MSX1	1
9783	MSX2	4.449480e-01
9784	MT1A	1
9785	MT1B	1
9786	MT1E	1
9787	MT1F	1
9788	MT1G	1
9789	MT1H	7.373820e-02
9790	MT1M	1
9791	MT1X	1
9792	MT2A	1
9793	MT3	1
9794	MT4	1
9795	MTA1	9.241821e-01
9796	MTA2	1
9797	MTA3	1
9798	MTAP	7.169166e-01
9799	MTBP	1
9800	MTCH1	4.906793e-01
9801	MTCH2	1
9802	MTCP1	1
9803	MTCP1NB	1
9804	MTDH	7.117144e-01
9805	MTERF	7.598315e-01
9806	MTERFD1	1.123551e-01
9807	MTERFD2	9.649572e-02
9808	MTERFD3	6.672496e-01
9809	MTF1	7.290327e-01
9810	MTF2	6.413941e-01
9811	MTFMT	1
9812	MTFR1	1
9813	MTG1	4.234526e-01
9814	MTHFD1	5.903905e-01
9815	MTHFD1L	8.079874e-01
9816	MTHFD2	6.996463e-02
9817	MTHFD2L	5.178420e-01
9818	MTHFR	7.754196e-01
9819	MTHFS	1
9820	MTHFSD	1
9821	MTIF2	1
9822	MTIF3	5.450735e-01
9823	MTL5	7.623104e-01
9824	MTM1	8.014589e-01
9825	MTMR1	7.811850e-01
9826	MTMR10	8.799449e-01
9827	MTMR11	9.431178e-01
9828	MTMR12	2.537669e-01
9829	MTMR14	7.517032e-01
9830	MTMR15	8.919635e-01
9831	MTMR2	7.624689e-01
9832	MTMR3	1.233698e-01
9833	MTMR4	7.656845e-01
9834	MTMR6	6.857215e-02
9835	MTMR7	1
9836	MTMR8	3.740411e-02
9837	MTMR9	1
9838	MTNR1A	4.249072e-01
9839	MTNR1B	9.334917e-06
9840	MTO1	1
9841	MTOR	9.968921e-01
9842	MTP18	5.060975e-01
9843	MTPAP	3.351831e-01
9844	MTPN	1
9845	MTR	7.977115e-01
9846	MTRF1	1
9847	MTRF1L	4.735615e-01
9848	MTRR	1.579781e-01
9849	MTSS1	2.967765e-01
9850	MTSS1L	1
9851	MTTP	1
9852	MTUS1	9.882980e-01
9853	MTUS2	1
9854	MTX1	3.025865e-01
9855	MTX2	6.392659e-01
9856	MTX3	5.942039e-01
9857	MUC1	1
9858	MUC13	7.631017e-01
9859	MUC15	5.516510e-01
9860	MUC16	1
9861	MUC17	1
Done

Running MutSig 2:
Scatter job 109: processing genes 9772 - 9861
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
MUC16
Processing conservation and coverage...
22% 45% 68% 91% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.157215e-02	ci left: 9.144065e-01	ci right 9.251474e-01	k: 9199	n:10000
Cons ci ratio: 7.400364e-02	ci left: 2.109269e-01	ci right 2.272370e-01	k: 2190	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
MUC16   10000 perm   11 sec   (912 perm/sec)   p_kst 1   p_cons 2.190000e-01   p_joint 9.199000e-01

Outputting figure to mutsig2_images.part000000000109/MUC16.135_43860_10000_1_0.219_0.9199.png
                gene_name: MUC16
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.93 

Current progress: 3 percent done.
MUC17
Processing conservation and coverage...
73% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.949308e-02	ci left: 4.863528e-01	ci right 5.060494e-01	k: 4962	n:10000
Cons ci ratio: 2.454149e-02	ci left: 7.094718e-01	ci right 7.272009e-01	k: 7184	n:10000
KS ci ratio: 5.287355e-02	ci left: 3.452172e-01	ci right 3.640676e-01	k: 3546	n:10000
MUC17   10000 perm   4 sec   (2536 perm/sec)   p_kst 3.546000e-01   p_cons 7.184000e-01   p_joint 4.962000e-01

Outputting figure to mutsig2_images.part000000000109/MUC17.39_13534_10000_0.3546_0.7184_0.4962.png
                gene_name: MUC17
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 5 percent done.
MTNR1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.983895e-02	ci left: 6.235661e-01	ci right 6.425563e-01	k: 6331	n:10000
Cons ci ratio: 2.335591e-02	ci left: 7.292631e-01	ci right 7.465981e-01	k: 7380	n:10000
KS ci ratio: 4.866711e-02	ci left: 3.838077e-01	ci right 4.030544e-01	k: 3934	n:10000
MTNR1B   10000 perm   2 sec   (5548 perm/sec)   p_kst 3.934000e-01   p_cons 7.380000e-01   p_joint 6.331000e-01

Outputting figure to mutsig2_images.part000000000109/MTNR1B.10_1097_10000_0.3934_0.738_0.6331.png
                gene_name: MTNR1B
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 8 percent done.
MTUS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.265846e-01	ci left: 8.193541e-02	ci right 9.310624e-02	k: 874	n:10000
Cons ci ratio: 2.726052e-02	ci left: 6.647131e-01	ci right 6.831855e-01	k: 6740	n:10000
KS ci ratio: 1.886187e-01	ci left: 3.748413e-02	ci right 4.538584e-02	k: 413	n:10000
MTUS2   10000 perm   2 sec   (4706 perm/sec)   p_kst 4.130000e-02   p_cons 6.740000e-01   p_joint 8.740000e-02

Joint ci ratio: 1.022535e-01	ci left: 6.493948e-02	ci right 7.198661e-02	k: 1368	n:20000
Cons ci ratio: 1.920884e-02	ci left: 6.690115e-01	ci right 6.820375e-01	k: 13511	n:20000
KS ci ratio: 1.422079e-01	ci left: 3.399185e-02	ci right 3.924397e-02	k: 731	n:20000
MTUS2   20000 perm   5 sec   (4251 perm/sec)   p_kst 3.655000e-02   p_cons 6.755500e-01   p_joint 6.840000e-02

Joint ci ratio: 7.729212e-02	ci left: 7.590640e-02	ci right 8.204210e-02	k: 2368	n:30000
Cons ci ratio: 1.577902e-02	ci left: 6.675579e-01	ci right 6.782086e-01	k: 20187	n:30000
KS ci ratio: 1.166657e-01	ci left: 3.414708e-02	ci right 3.841000e-02	k: 1087	n:30000
MTUS2   30000 perm   7 sec   (4080 perm/sec)   p_kst 3.623333e-02   p_cons 6.729000e-01   p_joint 7.893333e-02

Joint ci ratio: 8.264358e-02	ci left: 5.104511e-02	ci right 5.547003e-02	k: 2129	n:40000
Cons ci ratio: 1.361625e-02	ci left: 6.698581e-01	ci right 6.790666e-01	k: 26979	n:40000
KS ci ratio: 1.005574e-01	ci left: 3.475662e-02	ci right 3.846104e-02	k: 1463	n:40000
MTUS2   40000 perm   10 sec   (3969 perm/sec)   p_kst 3.657500e-02   p_cons 6.744750e-01   p_joint 5.322500e-02

Joint ci ratio: 7.184045e-02	ci left: 5.417745e-02	ci right 5.823427e-02	k: 2809	n:50000
Cons ci ratio: 1.214539e-02	ci left: 6.715567e-01	ci right 6.797829e-01	k: 33784	n:50000
KS ci ratio: 9.167130e-02	ci left: 3.366040e-02	ci right 3.691384e-02	k: 1763	n:50000
MTUS2   50000 perm   13 sec   (3876 perm/sec)   p_kst 3.526000e-02   p_cons 6.756800e-01   p_joint 5.618000e-02

Outputting figure to mutsig2_images.part000000000109/MTUS2.10_4254_50000_0.03526_0.67568_0.05618.png
                gene_name: MTUS2
               theta_stop: 0.092 
                    nperm: 50000 
                     p_ks: 0.035 
        ci_ks_bounds_left: 0.034 
       ci_ks_bounds_right: 0.037 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.056 
     ci_joint_bounds_left: 0.054 
    ci_joint_bounds_right: 0.058 

Current progress: 11 percent done.
MTMR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.051569e-01	ci left: 1.155484e-01	ci right 1.284727e-01	k: 1219	n:10000
Cons ci ratio: 1.051876e-02	ci left: 9.278190e-01	ci right 9.377271e-01	k: 9329	n:10000
KS ci ratio: 1.905474e-01	ci left: 3.672071e-02	ci right 4.454977e-02	k: 405	n:10000
MTMR3   10000 perm   2 sec   (4710 perm/sec)   p_kst 4.050000e-02   p_cons 9.329000e-01   p_joint 1.219000e-01

Joint ci ratio: 9.965990e-02	ci left: 6.821079e-02	ci right 7.541429e-02	k: 1435	n:20000
Cons ci ratio: 7.426972e-03	ci left: 9.294977e-01	ci right 9.364757e-01	k: 18661	n:20000
KS ci ratio: 1.352622e-01	ci left: 3.756809e-02	ci right 4.306657e-02	k: 805	n:20000
MTMR3   20000 perm   5 sec   (4289 perm/sec)   p_kst 4.025000e-02   p_cons 9.330500e-01   p_joint 7.175000e-02

Joint ci ratio: 7.795501e-02	ci left: 7.469509e-02	ci right 8.078699e-02	k: 2331	n:30000
Cons ci ratio: 6.014082e-03	ci left: 9.311995e-01	ci right 9.368494e-01	k: 28022	n:30000
KS ci ratio: 1.122936e-01	ci left: 3.683738e-02	ci right 4.125246e-02	k: 1170	n:30000
MTMR3   30000 perm   7 sec   (4134 perm/sec)   p_kst 3.900000e-02   p_cons 9.340667e-01   p_joint 7.770000e-02

Joint ci ratio: 6.599652e-02	ci left: 7.836887e-02	ci right 8.374213e-02	k: 3241	n:40000
Cons ci ratio: 5.220424e-03	ci left: 9.312939e-01	ci right 9.361929e-01	k: 37351	n:40000
KS ci ratio: 9.745538e-02	ci left: 3.697735e-02	ci right 4.078997e-02	k: 1554	n:40000
MTMR3   40000 perm   10 sec   (4025 perm/sec)   p_kst 3.885000e-02   p_cons 9.337750e-01   p_joint 8.102500e-02

Outputting figure to mutsig2_images.part000000000109/MTMR3.9_3700_40000_0.03885_0.93378_0.081025.png
                gene_name: MTMR3
               theta_stop: 0.097 
                    nperm: 40000 
                     p_ks: 0.039 
        ci_ks_bounds_left: 0.037 
       ci_ks_bounds_right: 0.041 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.081 
     ci_joint_bounds_left: 0.078 
    ci_joint_bounds_right: 0.084 

Current progress: 13 percent done.
MSR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.687406e-02	ci left: 8.364327e-01	ci right 8.507666e-01	k: 8437	n:10000
Cons ci ratio: 1.579224e-02	ci left: 8.534524e-01	ci right 8.671370e-01	k: 8604	n:10000
KS ci ratio: 2.679656e-02	ci left: 6.722668e-01	ci right 6.906274e-01	k: 6815	n:10000
MSR1   10000 perm   2 sec   (5442 perm/sec)   p_kst 6.815000e-01   p_cons 8.604000e-01   p_joint 8.437000e-01

Outputting figure to mutsig2_images.part000000000109/MSR1.8_1440_10000_0.6815_0.8604_0.8437.png
                gene_name: MSR1
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 16 percent done.
MTOR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.222657e-02	ci left: 4.529894e-01	ci right 4.726323e-01	k: 4628	n:10000
KS ci ratio: 3.132093e-02	ci left: 6.006606e-01	ci right 6.198751e-01	k: 6103	n:10000
MTOR   10000 perm   3 sec   (3755 perm/sec)   p_kst 6.103000e-01   p_cons 4.628000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000109/MTOR.8_7878_10000_0.6103_0.4628_1.png
                gene_name: MTOR
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 18 percent done.
MTMR8
Processing conservation and coverage...
Processing mutations... 
Skipping 3 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.500901e-02	ci left: 7.017023e-01	ci right 7.195748e-01	k: 7107	n:10000
Cons ci ratio: 2.402670e-02	ci left: 7.180521e-01	ci right 7.356156e-01	k: 7269	n:10000
KS ci ratio: 3.189665e-02	ci left: 5.919262e-01	ci right 6.112146e-01	k: 6016	n:10000
MTMR8   10000 perm   2 sec   (5738 perm/sec)   p_kst 6.016000e-01   p_cons 7.269000e-01   p_joint 7.107000e-01

Outputting figure to mutsig2_images.part000000000109/MTMR8.4_2171_10000_0.6016_0.7269_0.7107.png
                gene_name: MTMR8
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 21 percent done.
MTR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.851016e-02	ci left: 6.445828e-01	ci right 6.633275e-01	k: 6540	n:10000
KS ci ratio: 1.602799e-02	ci left: 8.497808e-01	ci right 8.636107e-01	k: 8568	n:10000
MTR   10000 perm   2 sec   (4736 perm/sec)   p_kst 8.568000e-01   p_cons 6.540000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000109/MTR.7_3930_10000_0.8568_0.654_1.png
                gene_name: MTR
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 24 percent done.
MTMR6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.867131e-02	ci left: 8.073497e-01	ci right 8.226663e-01	k: 8151	n:10000
Cons ci ratio: 3.208993e-02	ci left: 5.890154e-01	ci right 6.083271e-01	k: 5987	n:10000
KS ci ratio: 3.036125e-02	ci left: 6.154261e-01	ci right 6.345011e-01	k: 6250	n:10000
MTMR6   10000 perm   2 sec   (5401 perm/sec)   p_kst 6.250000e-01   p_cons 5.987000e-01   p_joint 8.151000e-01

Outputting figure to mutsig2_images.part000000000109/MTMR6.5_1922_10000_0.625_0.5987_0.8151.png
                gene_name: MTMR6
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 26 percent done.
MTRR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.387550e-02	ci left: 7.205765e-01	ci right 7.380897e-01	k: 7294	n:10000
KS ci ratio: 2.306618e-02	ci left: 7.341133e-01	ci right 7.513451e-01	k: 7428	n:10000
MTRR   10000 perm   2 sec   (5205 perm/sec)   p_kst 7.428000e-01   p_cons 7.294000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000109/MTRR.5_2238_10000_0.7428_0.7294_1.png
                gene_name: MTRR
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 29 percent done.
MTSS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.483445e-02	ci left: 5.489020e-01	ci right 5.684638e-01	k: 5587	n:10000
Cons ci ratio: 5.679055e-02	ci left: 3.134405e-01	ci right 3.318629e-01	k: 3226	n:10000
KS ci ratio: 2.573434e-02	ci left: 6.897011e-01	ci right 7.077830e-01	k: 6988	n:10000
MTSS1   10000 perm   2 sec   (5772 perm/sec)   p_kst 6.988000e-01   p_cons 3.226000e-01   p_joint 5.587000e-01

Outputting figure to mutsig2_images.part000000000109/MTSS1.5_2324_10000_0.6988_0.3226_0.5587.png
                gene_name: MTSS1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 32 percent done.
MSN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.723077e-02	ci left: 8.307321e-01	ci right 8.452705e-01	k: 8381	n:10000
Cons ci ratio: 4.631317e-02	ci left: 4.076104e-01	ci right 4.270378e-01	k: 4173	n:10000
KS ci ratio: 1.449229e-02	ci left: 8.732655e-01	ci right 8.861124e-01	k: 8798	n:10000
MSN   10000 perm   2 sec   (5680 perm/sec)   p_kst 8.798000e-01   p_cons 4.173000e-01   p_joint 8.381000e-01

Outputting figure to mutsig2_images.part000000000109/MSN.4_1786_10000_0.8798_0.4173_0.8381.png
                gene_name: MSN
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 34 percent done.
MTHFD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.199803e-02	ci left: 4.556848e-01	ci right 4.753353e-01	k: 4655	n:10000
KS ci ratio: 7.915936e-03	ci left: 9.569143e-01	ci right 9.646143e-01	k: 9609	n:10000
MTHFD1   10000 perm   2 sec   (5528 perm/sec)   p_kst 9.609000e-01   p_cons 4.655000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000109/MTHFD1.4_2916_10000_0.9609_0.4655_1.png
                gene_name: MTHFD1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 37 percent done.
MTHFD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.563659e-02	ci left: 6.913143e-01	ci right 7.093688e-01	k: 7004	n:10000
Cons ci ratio: 1.421012e-02	ci left: 8.774593e-01	ci right 8.901162e-01	k: 8839	n:10000
KS ci ratio: 2.599742e-02	ci left: 6.853663e-01	ci right 7.035203e-01	k: 6945	n:10000
MTHFD2   10000 perm   2 sec   (6299 perm/sec)   p_kst 6.945000e-01   p_cons 8.839000e-01   p_joint 7.004000e-01

Outputting figure to mutsig2_images.part000000000109/MTHFD2.4_1085_10000_0.6945_0.8839_0.7004.png
                gene_name: MTHFD2
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 39 percent done.
MTMR11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.445811e-02	ci left: 3.319049e-01	ci right 3.505876e-01	k: 3412	n:10000
Cons ci ratio: 8.020691e-02	ci left: 1.850099e-01	ci right 2.005695e-01	k: 1927	n:10000
KS ci ratio: 4.809090e-02	ci left: 3.894823e-01	ci right 4.087765e-01	k: 3991	n:10000
MTMR11   10000 perm   2 sec   (5564 perm/sec)   p_kst 3.991000e-01   p_cons 1.927000e-01   p_joint 3.412000e-01

Outputting figure to mutsig2_images.part000000000109/MTMR11.4_2237_10000_0.3991_0.1927_0.3412.png
                gene_name: MTMR11
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 42 percent done.
MTMR12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.182125e-02	ci left: 4.577814e-01	ci right 4.774375e-01	k: 4676	n:10000
Cons ci ratio: 1.130045e-01	ci left: 1.012990e-01	ci right 1.135307e-01	k: 1073	n:10000
KS ci ratio: 1.698263e-02	ci left: 8.347018e-01	ci right 8.490984e-01	k: 8420	n:10000
MTMR12   10000 perm   2 sec   (5322 perm/sec)   p_kst 8.420000e-01   p_cons 1.073000e-01   p_joint 4.676000e-01

Joint ci ratio: 3.325136e-02	ci left: 4.031223e-01	ci right 4.168039e-01	k: 8199	n:20000
Cons ci ratio: 7.894354e-02	ci left: 1.054008e-01	ci right 1.141130e-01	k: 2194	n:20000
KS ci ratio: 1.196500e-02	ci left: 8.378326e-01	ci right 8.479675e-01	k: 16859	n:20000
MTMR12   20000 perm   4 sec   (4816 perm/sec)   p_kst 8.429500e-01   p_cons 1.097000e-01   p_joint 4.099500e-01

Outputting figure to mutsig2_images.part000000000109/MTMR12.4_2308_20000_0.84295_0.1097_0.40995.png
                gene_name: MTMR12
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 45 percent done.
MTMR4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.375241e-02	ci left: 4.354264e-01	ci right 4.550056e-01	k: 4452	n:10000
Cons ci ratio: 5.794040e-02	ci left: 3.048095e-01	ci right 3.230990e-01	k: 3139	n:10000
KS ci ratio: 3.286347e-02	ci left: 5.774761e-01	ci right 5.968731e-01	k: 5872	n:10000
MTMR4   10000 perm   2 sec   (5204 perm/sec)   p_kst 5.872000e-01   p_cons 3.139000e-01   p_joint 4.452000e-01

Outputting figure to mutsig2_images.part000000000109/MTMR4.4_3660_10000_0.5872_0.3139_0.4452.png
                gene_name: MTMR4
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 47 percent done.
MTPAP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.613456e-02	ci left: 3.185017e-01	ci right 3.369988e-01	k: 3277	n:10000
Cons ci ratio: 4.593439e-02	ci left: 4.115964e-01	ci right 4.310494e-01	k: 4213	n:10000
KS ci ratio: 7.374510e-02	ci left: 2.121107e-01	ci right 2.284526e-01	k: 2202	n:10000
MTPAP   10000 perm   2 sec   (5599 perm/sec)   p_kst 2.202000e-01   p_cons 4.213000e-01   p_joint 3.277000e-01

Outputting figure to mutsig2_images.part000000000109/MTPAP.4_1785_10000_0.2202_0.4213_0.3277.png
                gene_name: MTPAP
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 50 percent done.
MTTP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.067840e-01	ci left: 7.332900e-03	ci right 1.116119e-02	k: 91	n:10000
Cons ci ratio: 1.752551e+00	ci left: 1.089969e-04	ci right 1.023839e-03	k: 4	n:10000
KS ci ratio: 7.295982e-02	ci left: 2.157611e-01	ci right 2.322000e-01	k: 2239	n:10000
MTTP   10000 perm   2 sec   (5361 perm/sec)   p_kst 2.239000e-01   p_cons 4.000000e-04   p_joint 9.100000e-03

Joint ci ratio: 3.660847e-01	ci left: 4.658600e-03	ci right 6.788973e-03	k: 113	n:20000
Cons ci ratio: 1.600053e+00	ci left: 8.117914e-05	ci right 5.833193e-04	k: 5	n:20000
KS ci ratio: 5.136199e-02	ci left: 2.197234e-01	ci right 2.313565e-01	k: 4510	n:20000
MTTP   20000 perm   4 sec   (4830 perm/sec)   p_kst 2.255000e-01   p_cons 2.500000e-04   p_joint 5.650000e-03

Joint ci ratio: 1.807637e-01	ci left: 1.403701e-02	ci right 1.685797e-02	k: 462	n:30000
Cons ci ratio: 7.836602e-01	ci left: 5.126402e-04	ci right 1.190104e-03	k: 24	n:30000
KS ci ratio: 4.209975e-02	ci left: 2.194578e-01	ci right 2.289290e-01	k: 6725	n:30000
MTTP   30000 perm   6 sec   (4623 perm/sec)   p_kst 2.241667e-01   p_cons 8.000000e-04   p_joint 1.540000e-02

Joint ci ratio: 1.914221e-01	ci left: 9.381360e-03	ci right 1.139067e-02	k: 414	n:40000
Cons ci ratio: 7.154134e-01	ci left: 4.855960e-04	ci right 1.041056e-03	k: 29	n:40000
KS ci ratio: 3.648836e-02	ci left: 2.198225e-01	ci right 2.280176e-01	k: 8956	n:40000
MTTP   40000 perm   9 sec   (4407 perm/sec)   p_kst 2.239000e-01   p_cons 7.250000e-04   p_joint 1.035000e-02

Joint ci ratio: 1.841619e-01	ci left: 8.152640e-03	ci right 9.825115e-03	k: 448	n:50000
Cons ci ratio: 6.623624e-01	ci left: 4.709643e-04	ci right 9.501034e-04	k: 34	n:50000
KS ci ratio: 3.279335e-02	ci left: 2.186020e-01	ci right 2.259102e-01	k: 11112	n:50000
MTTP   50000 perm   12 sec   (4301 perm/sec)   p_kst 2.222400e-01   p_cons 6.800000e-04   p_joint 8.960000e-03

Joint ci ratio: 1.459291e-01	ci left: 1.101555e-02	ci right 1.276547e-02	k: 712	n:60000
Cons ci ratio: 6.119868e-01	ci left: 4.763178e-04	ci right 9.077013e-04	k: 40	n:60000
KS ci ratio: 2.990815e-02	ci left: 2.192434e-01	ci right 2.259168e-01	k: 13354	n:60000
MTTP   60000 perm   14 sec   (4210 perm/sec)   p_kst 2.225667e-01   p_cons 6.666667e-04   p_joint 1.186667e-02

Joint ci ratio: 1.050215e-01	ci left: 1.848848e-02	ci right 2.055162e-02	k: 1365	n:70000
Cons ci ratio: 5.598000e-01	ci left: 5.056335e-04	ci right 9.090561e-04	k: 48	n:70000
KS ci ratio: 2.773518e-02	ci left: 2.189257e-01	ci right 2.250973e-01	k: 15540	n:70000
MTTP   70000 perm   17 sec   (4128 perm/sec)   p_kst 2.220000e-01   p_cons 6.857143e-04   p_joint 1.950000e-02

Joint ci ratio: 1.095156e-01	ci left: 1.489857e-02	ci right 1.663680e-02	k: 1260	n:80000
Cons ci ratio: 5.190284e-01	ci left: 5.288145e-04	ci right 9.089132e-04	k: 56	n:80000
KS ci ratio: 2.599389e-02	ci left: 2.184646e-01	ci right 2.242306e-01	k: 17707	n:80000
MTTP   80000 perm   20 sec   (4056 perm/sec)   p_kst 2.213375e-01   p_cons 7.000000e-04   p_joint 1.575000e-02

Joint ci ratio: 1.093933e-01	ci left: 1.329660e-02	ci right 1.484606e-02	k: 1265	n:90000
Cons ci ratio: 4.936980e-01	ci left: 5.282067e-04	ci right 8.830387e-04	k: 62	n:90000
KS ci ratio: 2.454328e-02	ci left: 2.181268e-01	ci right 2.235579e-01	k: 19875	n:90000
MTTP   90000 perm   23 sec   (3986 perm/sec)   p_kst 2.208333e-01   p_cons 6.888889e-04   p_joint 1.405556e-02

Joint ci ratio: 1.999177e-01	ci left: 3.447113e-03	ci right 4.222103e-03	k: 382	n:100000
Cons ci ratio: 6.624817e-01	ci left: 2.354710e-04	ci right 4.750838e-04	k: 34	n:100000
KS ci ratio: 2.331392e-02	ci left: 2.178240e-01	ci right 2.229722e-01	k: 22039	n:100000
MTTP   100000 perm   25 sec   (3923 perm/sec)   p_kst 2.203900e-01   p_cons 3.400000e-04   p_joint 3.820000e-03

Joint ci ratio: 1.205105e-01	ci left: 8.952808e-03	ci right 1.010964e-02	k: 1047	n:110000
Cons ci ratio: 4.524862e-01	ci left: 5.282714e-04	ci right 8.444749e-04	k: 74	n:110000
KS ci ratio: 2.222601e-02	ci left: 2.179895e-01	ci right 2.228980e-01	k: 24248	n:110000
MTTP   110000 perm   28 sec   (3860 perm/sec)   p_kst 2.204364e-01   p_cons 6.727273e-04   p_joint 9.518182e-03

Joint ci ratio: 1.227029e-01	ci left: 7.915604e-03	ci right 8.958361e-03	k: 1011	n:120000
Cons ci ratio: 4.354067e-01	ci left: 5.286595e-04	ci right 8.296567e-04	k: 80	n:120000
KS ci ratio: 2.128106e-02	ci left: 2.180739e-01	ci right 2.227729e-01	k: 26450	n:120000
MTTP   120000 perm   32 sec   (3801 perm/sec)   p_kst 2.204167e-01   p_cons 6.666667e-04   p_joint 8.425000e-03

Joint ci ratio: 1.051536e-01	ci left: 1.002043e-02	ci right 1.114002e-02	k: 1374	n:130000
Cons ci ratio: 4.153753e-01	ci left: 5.429464e-04	ci right 8.339227e-04	k: 88	n:130000
KS ci ratio: 2.046508e-02	ci left: 2.178502e-01	ci right 2.223623e-01	k: 28613	n:130000
MTTP   130000 perm   35 sec   (3743 perm/sec)   p_kst 2.201000e-01   p_cons 6.769231e-04   p_joint 1.056923e-02

Joint ci ratio: 1.014939e-01	ci left: 1.000747e-02	ci right 1.108438e-02	k: 1475	n:140000
Cons ci ratio: 3.978764e-01	ci left: 5.554650e-04	ci right 8.373110e-04	k: 96	n:140000
KS ci ratio: 1.970100e-02	ci left: 2.182736e-01	ci right 2.226237e-01	k: 30862	n:140000
MTTP   140000 perm   38 sec   (3692 perm/sec)   p_kst 2.204429e-01   p_cons 6.857143e-04   p_joint 1.053571e-02

Joint ci ratio: 1.070507e-01	ci left: 8.385462e-03	ci right 9.340335e-03	k: 1328	n:150000
Cons ci ratio: 3.824176e-01	ci left: 5.665376e-04	ci right 8.400277e-04	k: 104	n:150000
KS ci ratio: 1.903390e-02	ci left: 2.183310e-01	ci right 2.225332e-01	k: 33064	n:150000
MTTP   150000 perm   41 sec   (3643 perm/sec)   p_kst 2.204267e-01   p_cons 6.933333e-04   p_joint 8.853333e-03

Joint ci ratio: 1.163557e-01	ci left: 6.633724e-03	ci right 7.459290e-03	k: 1126	n:160000
Cons ci ratio: 3.719397e-01	ci left: 5.650742e-04	ci right 8.285649e-04	k: 110	n:160000
KS ci ratio: 1.841487e-02	ci left: 2.186699e-01	ci right 2.227403e-01	k: 35312	n:160000
MTTP   160000 perm   45 sec   (3594 perm/sec)   p_kst 2.207000e-01   p_cons 6.875000e-04   p_joint 7.037500e-03

Joint ci ratio: 1.168506e-01	ci left: 6.192025e-03	ci right 6.966123e-03	k: 1117	n:170000
Cons ci ratio: 3.622783e-01	ci left: 5.638732e-04	ci right 8.183617e-04	k: 116	n:170000
KS ci ratio: 1.786874e-02	ci left: 2.186601e-01	ci right 2.226083e-01	k: 37507	n:170000
MTTP   170000 perm   48 sec   (3549 perm/sec)   p_kst 2.206294e-01   p_cons 6.823529e-04   p_joint 6.570588e-03

Joint ci ratio: 1.169775e-01	ci left: 5.837175e-03	ci right 6.567755e-03	k: 1115	n:180000
Cons ci ratio: 3.504927e-01	ci left: 5.730138e-04	ci right 8.213029e-04	k: 124	n:180000
KS ci ratio: 1.736007e-02	ci left: 2.188191e-01	ci right 2.226566e-01	k: 39732	n:180000
MTTP   180000 perm   51 sec   (3504 perm/sec)   p_kst 2.207333e-01   p_cons 6.888889e-04   p_joint 6.194444e-03

Joint ci ratio: 1.218108e-01	ci left: 5.090715e-03	ci right 5.756090e-03	k: 1029	n:190000
Cons ci ratio: 3.423730e-01	ci left: 5.716868e-04	ci right 8.123923e-04	k: 130	n:190000
KS ci ratio: 1.689844e-02	ci left: 2.188421e-01	ci right 2.225769e-01	k: 41934	n:190000
MTTP   190000 perm   55 sec   (3456 perm/sec)   p_kst 2.207053e-01   p_cons 6.842105e-04   p_joint 5.415789e-03

Joint ci ratio: 1.201390e-01	ci left: 4.976774e-03	ci right 5.617693e-03	k: 1058	n:200000
Cons ci ratio: 3.347926e-01	ci left: 5.705521e-04	ci right 8.043139e-04	k: 136	n:200000
KS ci ratio: 1.607506e-02	ci left: 2.273394e-01	ci right 2.310285e-01	k: 45836	n:200000
MTTP   200000 perm   59 sec   (3412 perm/sec)   p_kst 2.291800e-01   p_cons 6.800000e-04   p_joint 5.290000e-03

Joint ci ratio: 1.198702e-01	ci left: 4.762848e-03	ci right 5.374746e-03	k: 1063	n:210000
Cons ci ratio: 3.232022e-01	ci left: 5.870711e-04	ci right 8.175491e-04	k: 146	n:210000
KS ci ratio: 1.569058e-02	ci left: 2.273182e-01	ci right 2.309179e-01	k: 48114	n:210000
MTTP   210000 perm   62 sec   (3369 perm/sec)   p_kst 2.291143e-01   p_cons 6.952381e-04   p_joint 5.061905e-03

Joint ci ratio: 9.934569e-02	ci left: 6.678015e-03	ci right 7.380522e-03	k: 1545	n:220000
Cons ci ratio: 3.157713e-01	ci left: 5.896534e-04	ci right 8.147486e-04	k: 153	n:220000
KS ci ratio: 1.533224e-02	ci left: 2.273044e-01	ci right 2.308209e-01	k: 50393	n:220000
MTTP   220000 perm   66 sec   (3327 perm/sec)   p_kst 2.290591e-01   p_cons 6.954545e-04   p_joint 7.022727e-03

Joint ci ratio: 8.735991e-02	ci left: 8.298975e-03	ci right 9.061310e-03	k: 1995	n:230000
Cons ci ratio: 3.107681e-01	ci left: 5.840463e-04	ci right 8.027679e-04	k: 158	n:230000
KS ci ratio: 1.497746e-02	ci left: 2.277610e-01	ci right 2.312023e-01	k: 52780	n:230000
MTTP   230000 perm   70 sec   (3286 perm/sec)   p_kst 2.294783e-01   p_cons 6.869565e-04   p_joint 8.673913e-03

Joint ci ratio: 9.390553e-02	ci left: 6.869697e-03	ci right 7.550619e-03	k: 1729	n:240000
Cons ci ratio: 3.041451e-01	ci left: 5.866280e-04	ci right 8.007287e-04	k: 165	n:240000
KS ci ratio: 1.465569e-02	ci left: 2.279518e-01	ci right 2.313214e-01	k: 55112	n:240000
MTTP   240000 perm   74 sec   (3248 perm/sec)   p_kst 2.296333e-01   p_cons 6.875000e-04   p_joint 7.204167e-03

Joint ci ratio: 9.201041e-02	ci left: 6.876214e-03	ci right 7.543287e-03	k: 1801	n:250000
Cons ci ratio: 3.005474e-01	ci left: 5.779489e-04	ci right 7.859103e-04	k: 169	n:250000
KS ci ratio: 1.435445e-02	ci left: 2.281121e-01	ci right 2.314142e-01	k: 57440	n:250000
MTTP   250000 perm   78 sec   (3210 perm/sec)   p_kst 2.297600e-01   p_cons 6.760000e-04   p_joint 7.204000e-03

Joint ci ratio: 1.068097e-01	ci left: 4.878471e-03	ci right 5.432648e-03	k: 1339	n:260000
Cons ci ratio: 2.962238e-01	ci left: 5.735113e-04	ci right 7.763494e-04	k: 174	n:260000
KS ci ratio: 1.416355e-02	ci left: 2.259549e-01	ci right 2.291819e-01	k: 59167	n:260000
MTTP   260000 perm   82 sec   (3173 perm/sec)   p_kst 2.275654e-01   p_cons 6.692308e-04   p_joint 5.150000e-03

Joint ci ratio: 1.058713e-01	ci left: 4.784299e-03	ci right 5.322706e-03	k: 1363	n:270000
Cons ci ratio: 2.920816e-01	ci left: 5.694222e-04	ci right 7.674771e-04	k: 179	n:270000
KS ci ratio: 1.389698e-02	ci left: 2.260306e-01	ci right 2.291974e-01	k: 61455	n:270000
MTTP   270000 perm   86 sec   (3129 perm/sec)   p_kst 2.276111e-01   p_cons 6.629630e-04   p_joint 5.048148e-03

Joint ci ratio: 9.428384e-02	ci left: 5.846317e-03	ci right 6.428262e-03	k: 1717	n:280000
Cons ci ratio: 2.842897e-01	ci left: 5.822197e-04	ci right 7.783546e-04	k: 189	n:280000
KS ci ratio: 1.364839e-02	ci left: 2.260124e-01	ci right 2.291218e-01	k: 63718	n:280000
MTTP   280000 perm   91 sec   (3093 perm/sec)   p_kst 2.275643e-01   p_cons 6.750000e-04   p_joint 6.132143e-03

Joint ci ratio: 9.380083e-02	ci left: 5.705310e-03	ci right 6.270148e-03	k: 1735	n:290000
Cons ci ratio: 2.806222e-01	ci left: 5.781632e-04	ci right 7.699746e-04	k: 194	n:290000
KS ci ratio: 1.340689e-02	ci left: 2.261472e-01	ci right 2.292030e-01	k: 66025	n:290000
MTTP   290000 perm   95 sec   (3059 perm/sec)   p_kst 2.276724e-01   p_cons 6.689655e-04   p_joint 5.982759e-03

Joint ci ratio: 9.300535e-02	ci left: 5.612784e-03	ci right 6.163493e-03	k: 1765	n:300000
Cons ci ratio: 2.784899e-01	ci left: 5.681897e-04	ci right 7.550086e-04	k: 197	n:300000
KS ci ratio: 1.318314e-02	ci left: 2.261305e-01	ci right 2.291347e-01	k: 68289	n:300000
MTTP   300000 perm   99 sec   (3026 perm/sec)   p_kst 2.276300e-01   p_cons 6.566667e-04   p_joint 5.883333e-03

Joint ci ratio: 9.128856e-02	ci left: 5.642879e-03	ci right 6.185775e-03	k: 1832	n:310000
Cons ci ratio: 2.717115e-01	ci left: 5.798948e-04	ci right 7.651302e-04	k: 207	n:310000
KS ci ratio: 1.296334e-02	ci left: 2.263020e-01	ci right 2.292579e-01	k: 70611	n:310000
MTTP   310000 perm   104 sec   (2992 perm/sec)   p_kst 2.277774e-01   p_cons 6.677419e-04   p_joint 5.909677e-03

Joint ci ratio: 9.087418e-02	ci left: 5.518438e-03	ci right 6.046823e-03	k: 1849	n:320000
Cons ci ratio: 2.672515e-01	ci left: 5.821705e-04	ci right 7.645691e-04	k: 214	n:320000
KS ci ratio: 1.275666e-02	ci left: 2.263945e-01	ci right 2.293042e-01	k: 72911	n:320000
MTTP   320000 perm   108 sec   (2960 perm/sec)   p_kst 2.278469e-01   p_cons 6.687500e-04   p_joint 5.778125e-03

Joint ci ratio: 9.130502e-02	ci left: 5.300844e-03	ci right 5.810928e-03	k: 1832	n:330000
Cons ci ratio: 2.648007e-01	ci left: 5.758416e-04	ci right 7.543284e-04	k: 218	n:330000
KS ci ratio: 1.256942e-02	ci left: 2.262066e-01	ci right 2.290709e-01	k: 75120	n:330000
MTTP   330000 perm   113 sec   (2927 perm/sec)   p_kst 2.276364e-01   p_cons 6.606061e-04   p_joint 5.551515e-03

Joint ci ratio: 8.792781e-02	ci left: 5.556133e-03	ci right 6.069992e-03	k: 1975	n:340000
Cons ci ratio: 2.583893e-01	ci left: 5.891374e-04	ci right 7.666109e-04	k: 229	n:340000
KS ci ratio: 1.237992e-02	ci left: 2.263206e-01	ci right 2.291428e-01	k: 77428	n:340000
MTTP   340000 perm   117 sec   (2894 perm/sec)   p_kst 2.277294e-01   p_cons 6.735294e-04   p_joint 5.808824e-03

Joint ci ratio: 8.834072e-02	ci left: 5.347066e-03	ci right 5.844031e-03	k: 1957	n:350000
Cons ci ratio: 2.561724e-01	ci left: 5.829963e-04	ci right 7.568721e-04	k: 233	n:350000
KS ci ratio: 1.220866e-02	ci left: 2.261433e-01	ci right 2.289240e-01	k: 79636	n:350000
MTTP   350000 perm   122 sec   (2861 perm/sec)   p_kst 2.275314e-01   p_cons 6.657143e-04   p_joint 5.591429e-03

Joint ci ratio: 8.686565e-02	ci left: 5.380574e-03	ci right 5.871880e-03	k: 2024	n:360000
Cons ci ratio: 2.513829e-01	ci left: 5.902124e-04	ci right 7.624341e-04	k: 242	n:360000
KS ci ratio: 1.202605e-02	ci left: 2.265084e-01	ci right 2.292516e-01	k: 82036	n:360000
MTTP   360000 perm   127 sec   (2829 perm/sec)   p_kst 2.278778e-01   p_cons 6.722222e-04   p_joint 5.622222e-03

Joint ci ratio: 8.610602e-02	ci left: 5.330340e-03	ci right 5.812588e-03	k: 2060	n:370000
Cons ci ratio: 2.463637e-01	ci left: 5.996027e-04	ci right 7.705364e-04	k: 252	n:370000
KS ci ratio: 1.186578e-02	ci left: 2.264278e-01	ci right 2.291332e-01	k: 84278	n:370000
MTTP   370000 perm   132 sec   (2795 perm/sec)   p_kst 2.277784e-01   p_cons 6.810811e-04   p_joint 5.567568e-03

Joint ci ratio: 8.190283e-02	ci left: 5.746603e-03	ci right 6.239923e-03	k: 2276	n:380000
Cons ci ratio: 2.407194e-01	ci left: 6.134763e-04	ci right 7.837605e-04	k: 264	n:380000
KS ci ratio: 1.171114e-02	ci left: 2.263701e-01	ci right 2.290393e-01	k: 86527	n:380000
MTTP   380000 perm   137 sec   (2765 perm/sec)   p_kst 2.277026e-01   p_cons 6.947368e-04   p_joint 5.989474e-03

Joint ci ratio: 8.070575e-02	ci left: 5.770071e-03	ci right 6.257825e-03	k: 2344	n:390000
Cons ci ratio: 2.389239e-01	ci left: 6.073860e-04	ci right 7.745360e-04	k: 268	n:390000
KS ci ratio: 1.156415e-02	ci left: 2.262618e-01	ci right 2.288961e-01	k: 88755	n:390000
MTTP   390000 perm   143 sec   (2736 perm/sec)   p_kst 2.275769e-01   p_cons 6.871795e-04   p_joint 6.010256e-03

Joint ci ratio: 9.555134e-02	ci left: 3.989732e-03	ci right 4.392503e-03	k: 1675	n:400000
Cons ci ratio: 3.023707e-01	ci left: 3.565897e-04	ci right 4.858272e-04	k: 167	n:400000
KS ci ratio: 1.142021e-02	ci left: 2.262315e-01	ci right 2.288324e-01	k: 91012	n:400000
MTTP   400000 perm   148 sec   (2704 perm/sec)   p_kst 2.275300e-01   p_cons 4.175000e-04   p_joint 4.187500e-03

Joint ci ratio: 9.630923e-02	ci left: 3.830513e-03	ci right 4.220451e-03	k: 1649	n:410000
Cons ci ratio: 3.005876e-01	ci left: 3.524014e-04	ci right 4.792239e-04	k: 169	n:410000
KS ci ratio: 1.128520e-02	ci left: 2.260885e-01	ci right 2.286568e-01	k: 93222	n:410000
MTTP   410000 perm   153 sec   (2677 perm/sec)   p_kst 2.273707e-01   p_cons 4.121951e-04   p_joint 4.021951e-03

Joint ci ratio: 9.206864e-02	ci left: 4.099694e-03	ci right 4.497669e-03	k: 1804	n:420000
Cons ci ratio: 2.979703e-01	ci left: 3.506175e-04	ci right 4.754915e-04	k: 172	n:420000
KS ci ratio: 1.115078e-02	ci left: 2.260808e-01	ci right 2.286182e-01	k: 95486	n:420000
MTTP   420000 perm   158 sec   (2650 perm/sec)   p_kst 2.273476e-01   p_cons 4.095238e-04   p_joint 4.295238e-03

Joint ci ratio: 9.106546e-02	ci left: 4.095245e-03	ci right 4.488225e-03	k: 1844	n:430000
Cons ci ratio: 2.945843e-01	ci left: 3.510746e-04	ci right 4.744252e-04	k: 176	n:430000
KS ci ratio: 1.102316e-02	ci left: 2.260063e-01	ci right 2.285137e-01	k: 97721	n:430000
MTTP   430000 perm   164 sec   (2624 perm/sec)   p_kst 2.272581e-01   p_cons 4.093023e-04   p_joint 4.288372e-03

Joint ci ratio: 9.007037e-02	ci left: 4.093242e-03	ci right 4.481512e-03	k: 1885	n:440000
Cons ci ratio: 2.937567e-01	ci left: 3.452005e-04	ci right 4.660830e-04	k: 177	n:440000
KS ci ratio: 1.089617e-02	ci left: 2.260533e-01	ci right 2.285321e-01	k: 100008	n:440000
MTTP   440000 perm   169 sec   (2599 perm/sec)   p_kst 2.272909e-01   p_cons 4.022727e-04   p_joint 4.284091e-03

Joint ci ratio: 9.095052e-02	ci left: 3.924076e-03	ci right 4.300131e-03	k: 1849	n:450000
Cons ci ratio: 2.858353e-01	ci left: 3.581371e-04	ci right 4.795578e-04	k: 187	n:450000
KS ci ratio: 1.077850e-02	ci left: 2.259342e-01	ci right 2.283848e-01	k: 102221	n:450000
MTTP   450000 perm   175 sec   (2575 perm/sec)   p_kst 2.271578e-01   p_cons 4.155556e-04   p_joint 4.108889e-03

Joint ci ratio: 9.024713e-02	ci left: 3.900383e-03	ci right 4.271123e-03	k: 1878	n:460000
Cons ci ratio: 2.828423e-01	ci left: 3.584271e-04	ci right 4.784467e-04	k: 191	n:460000
KS ci ratio: 1.066035e-02	ci left: 2.259594e-01	ci right 2.283832e-01	k: 104498	n:460000
MTTP   460000 perm   180 sec   (2550 perm/sec)   p_kst 2.271696e-01   p_cons 4.152174e-04   p_joint 4.082609e-03

Joint ci ratio: 1.012896e-01	ci left: 3.015652e-03	ci right 3.339457e-03	k: 1492	n:470000
Cons ci ratio: 2.813812e-01	ci left: 3.547552e-04	ci right 4.728228e-04	k: 193	n:470000
KS ci ratio: 1.054235e-02	ci left: 2.261046e-01	ci right 2.285030e-01	k: 106832	n:470000
MTTP   470000 perm   186 sec   (2522 perm/sec)   p_kst 2.273021e-01   p_cons 4.106383e-04   p_joint 3.174468e-03

Joint ci ratio: 8.786892e-02	ci left: 3.947676e-03	ci right 4.312516e-03	k: 1981	n:480000
Cons ci ratio: 2.764373e-01	ci left: 3.609282e-04	ci right 4.785726e-04	k: 200	n:480000
KS ci ratio: 1.043598e-02	ci left: 2.259819e-01	ci right 2.283547e-01	k: 109040	n:480000
MTTP   480000 perm   192 sec   (2499 perm/sec)   p_kst 2.271667e-01   p_cons 4.166667e-04   p_joint 4.127083e-03

Joint ci ratio: 8.708210e-02	ci left: 3.938973e-03	ci right 4.299583e-03	k: 2017	n:490000
Cons ci ratio: 2.724010e-01	ci left: 3.649649e-04	ci right 4.818910e-04	k: 206	n:490000
KS ci ratio: 1.032934e-02	ci left: 2.259805e-01	ci right 2.283288e-01	k: 111305	n:490000
MTTP   490000 perm   198 sec   (2476 perm/sec)   p_kst 2.271531e-01   p_cons 4.204082e-04   p_joint 4.116327e-03

Joint ci ratio: 8.787621e-02	ci left: 3.789756e-03	ci right 4.140031e-03	k: 1981	n:500000
Cons ci ratio: 2.717463e-01	ci left: 3.595290e-04	ci right 4.743895e-04	k: 207	n:500000
KS ci ratio: 1.022632e-02	ci left: 2.259653e-01	ci right 2.282899e-01	k: 113563	n:500000
MTTP   500000 perm   204 sec   (2454 perm/sec)   p_kst 2.271260e-01   p_cons 4.140000e-04   p_joint 3.962000e-03

Joint ci ratio: 8.704587e-02	ci left: 3.788327e-03	ci right 4.134993e-03	k: 2019	n:510000
Cons ci ratio: 2.691705e-01	ci left: 3.597908e-04	ci right 4.734614e-04	k: 211	n:510000
KS ci ratio: 1.012377e-02	ci left: 2.260388e-01	ci right 2.283408e-01	k: 115866	n:510000
MTTP   510000 perm   210 sec   (2432 perm/sec)   p_kst 2.271882e-01   p_cons 4.137255e-04   p_joint 3.958824e-03

Joint ci ratio: 8.983765e-02	ci left: 3.484142e-03	ci right 3.813734e-03	k: 1896	n:520000
Cons ci ratio: 2.679103e-01	ci left: 3.564589e-04	ci right 4.684610e-04	k: 213	n:520000
KS ci ratio: 1.002293e-02	ci left: 2.261557e-01	ci right 2.284358e-01	k: 118193	n:520000
MTTP   520000 perm   216 sec   (2411 perm/sec)   p_kst 2.272942e-01   p_cons 4.096154e-04   p_joint 3.646154e-03

Joint ci ratio: 8.883590e-02	ci left: 3.497724e-03	ci right 3.824720e-03	k: 1939	n:530000
Cons ci ratio: 2.654410e-01	ci left: 3.567759e-04	ci right 4.676727e-04	k: 217	n:530000
KS ci ratio: 9.927602e-03	ci left: 2.261779e-01	ci right 2.284364e-01	k: 120472	n:530000
MTTP   530000 perm   222 sec   (2391 perm/sec)   p_kst 2.273057e-01   p_cons 4.094340e-04   p_joint 3.658491e-03

Joint ci ratio: 8.826993e-02	ci left: 3.478220e-03	ci right 3.801215e-03	k: 1964	n:540000
Cons ci ratio: 2.642323e-01	ci left: 3.536267e-04	ci right 4.629612e-04	k: 219	n:540000
KS ci ratio: 9.832455e-03	ci left: 2.262881e-01	ci right 2.285259e-01	k: 122799	n:540000
MTTP   540000 perm   228 sec   (2372 perm/sec)   p_kst 2.274056e-01   p_cons 4.055556e-04   p_joint 3.637037e-03

Joint ci ratio: 8.793665e-02	ci left: 3.441649e-03	ci right 3.759979e-03	k: 1979	n:550000
Cons ci ratio: 2.589867e-01	ci left: 3.624881e-04	ci right 4.719776e-04	k: 228	n:550000
KS ci ratio: 9.744378e-03	ci left: 2.262365e-01	ci right 2.284536e-01	k: 125039	n:550000
MTTP   550000 perm   234 sec   (2351 perm/sec)   p_kst 2.273436e-01   p_cons 4.145455e-04   p_joint 3.598182e-03

Joint ci ratio: 8.816320e-02	ci left: 3.362721e-03	ci right 3.674593e-03	k: 1969	n:560000
Cons ci ratio: 2.551163e-01	ci left: 3.677099e-04	ci right 4.768528e-04	k: 235	n:560000
KS ci ratio: 9.657250e-03	ci left: 2.262368e-01	ci right 2.284339e-01	k: 127307	n:560000
MTTP   560000 perm   240 sec   (2330 perm/sec)   p_kst 2.273339e-01   p_cons 4.196429e-04   p_joint 3.516071e-03

Joint ci ratio: 9.030697e-02	ci left: 3.145908e-03	ci right 3.445141e-03	k: 1877	n:570000
Cons ci ratio: 2.545782e-01	ci left: 3.629011e-04	ci right 4.703534e-04	k: 236	n:570000
KS ci ratio: 9.569647e-03	ci left: 2.263386e-01	ci right 2.285168e-01	k: 129633	n:570000
MTTP   570000 perm   247 sec   (2310 perm/sec)   p_kst 2.274263e-01   p_cons 4.140351e-04   p_joint 3.292982e-03

Joint ci ratio: 7.917462e-02	ci left: 4.041944e-03	ci right 4.376831e-03	k: 2440	n:580000
Cons ci ratio: 2.535113e-01	ci left: 3.598728e-04	ci right 4.659113e-04	k: 238	n:580000
KS ci ratio: 9.487223e-03	ci left: 2.263321e-01	ci right 2.284913e-01	k: 131898	n:580000
MTTP   580000 perm   253 sec   (2291 perm/sec)   p_kst 2.274103e-01   p_cons 4.103448e-04   p_joint 4.206897e-03

Joint ci ratio: 7.888592e-02	ci left: 4.003339e-03	ci right 4.333763e-03	k: 2458	n:590000
Cons ci ratio: 2.514161e-01	ci left: 3.601240e-04	ci right 4.652222e-04	k: 242	n:590000
KS ci ratio: 9.406213e-03	ci left: 2.263513e-01	ci right 2.284921e-01	k: 134178	n:590000
MTTP   590000 perm   260 sec   (2271 perm/sec)   p_kst 2.274203e-01   p_cons 4.101695e-04   p_joint 4.166102e-03

Joint ci ratio: 7.845734e-02	ci left: 3.980729e-03	ci right 4.307420e-03	k: 2485	n:600000
Cons ci ratio: 2.478707e-01	ci left: 3.650589e-04	ci right 4.698634e-04	k: 249	n:600000
KS ci ratio: 9.326535e-03	ci left: 2.263965e-01	ci right 2.285195e-01	k: 136474	n:600000
MTTP   600000 perm   267 sec   (2250 perm/sec)   p_kst 2.274567e-01   p_cons 4.150000e-04   p_joint 4.141667e-03

Joint ci ratio: 7.809809e-02	ci left: 3.952436e-03	ci right 4.275252e-03	k: 2508	n:610000
Cons ci ratio: 2.468856e-01	ci left: 3.621497e-04	ci right 4.656423e-04	k: 251	n:610000
KS ci ratio: 9.249366e-03	ci left: 2.264206e-01	ci right 2.285262e-01	k: 138758	n:610000
MTTP   610000 perm   273 sec   (2231 perm/sec)   p_kst 2.274721e-01   p_cons 4.114754e-04   p_joint 4.111475e-03

Joint ci ratio: 7.751350e-02	ci left: 3.948785e-03	ci right 4.268780e-03	k: 2546	n:620000
Cons ci ratio: 2.435259e-01	ci left: 3.669054e-04	ci right 4.701145e-04	k: 258	n:620000
KS ci ratio: 9.172019e-03	ci left: 2.265230e-01	ci right 2.286118e-01	k: 141091	n:620000
MTTP   620000 perm   280 sec   (2213 perm/sec)   p_kst 2.275661e-01   p_cons 4.161290e-04   p_joint 4.106452e-03

Joint ci ratio: 7.682258e-02	ci left: 3.957713e-03	ci right 4.275445e-03	k: 2592	n:630000
Cons ci ratio: 2.416669e-01	ci left: 3.670447e-04	ci right 4.693868e-04	k: 262	n:630000
KS ci ratio: 9.098838e-03	ci left: 2.265350e-01	ci right 2.286072e-01	k: 143369	n:630000
MTTP   630000 perm   287 sec   (2193 perm/sec)   p_kst 2.275698e-01   p_cons 4.158730e-04   p_joint 4.114286e-03

Joint ci ratio: 7.623688e-02	ci left: 3.957178e-03	ci right 4.272337e-03	k: 2632	n:640000
Cons ci ratio: 2.398499e-01	ci left: 3.671827e-04	ci right 4.686789e-04	k: 266	n:640000
KS ci ratio: 9.032039e-03	ci left: 2.263657e-01	ci right 2.284211e-01	k: 145531	n:640000
MTTP   640000 perm   294 sec   (2173 perm/sec)   p_kst 2.273922e-01   p_cons 4.156250e-04   p_joint 4.112500e-03

Joint ci ratio: 7.565017e-02	ci left: 3.958177e-03	ci right 4.270883e-03	k: 2673	n:650000
Cons ci ratio: 2.367658e-01	ci left: 3.716601e-04	ci right 4.728793e-04	k: 273	n:650000
KS ci ratio: 8.961662e-03	ci left: 2.263984e-01	ci right 2.284379e-01	k: 147821	n:650000
MTTP   650000 perm   301 sec   (2156 perm/sec)   p_kst 2.274169e-01   p_cons 4.200000e-04   p_joint 4.112308e-03

Joint ci ratio: 7.538409e-02	ci left: 3.926447e-03	ci right 4.235507e-03	k: 2692	n:660000
Cons ci ratio: 2.337976e-01	ci left: 3.760099e-04	ci right 4.769445e-04	k: 280	n:660000
KS ci ratio: 8.894055e-03	ci left: 2.263847e-01	ci right 2.284086e-01	k: 150081	n:660000
MTTP   660000 perm   309 sec   (2138 perm/sec)   p_kst 2.273955e-01   p_cons 4.242424e-04   p_joint 4.078788e-03

Joint ci ratio: 7.483045e-02	ci left: 3.926423e-03	ci right 4.233113e-03	k: 2732	n:670000
Cons ci ratio: 2.317448e-01	ci left: 3.774253e-04	ci right 4.777229e-04	k: 285	n:670000
KS ci ratio: 8.824770e-03	ci left: 2.264981e-01	ci right 2.285072e-01	k: 152426	n:670000
MTTP   670000 perm   316 sec   (2121 perm/sec)   p_kst 2.275015e-01   p_cons 4.253731e-04   p_joint 4.077612e-03

Joint ci ratio: 6.880985e-02	ci left: 4.586512e-03	ci right 4.914788e-03	k: 3229	n:680000
Cons ci ratio: 2.285694e-01	ci left: 3.829615e-04	ci right 4.831393e-04	k: 293	n:680000
KS ci ratio: 8.757957e-03	ci left: 2.265730e-01	ci right 2.285675e-01	k: 154747	n:680000
MTTP   680000 perm   323 sec   (2105 perm/sec)   p_kst 2.275691e-01   p_cons 4.308824e-04   p_joint 4.748529e-03

Joint ci ratio: 7.118722e-02	ci left: 4.219566e-03	ci right 4.532444e-03	k: 3018	n:690000
Cons ci ratio: 2.277963e-01	ci left: 3.801442e-04	ci right 4.792013e-04	k: 295	n:690000
KS ci ratio: 8.692782e-03	ci left: 2.266401e-01	ci right 2.286202e-01	k: 157064	n:690000
MTTP   690000 perm   330 sec   (2088 perm/sec)   p_kst 2.276290e-01   p_cons 4.275362e-04   p_joint 4.373913e-03

Joint ci ratio: 7.124873e-02	ci left: 4.152265e-03	ci right 4.460430e-03	k: 3013	n:700000
Cons ci ratio: 2.258963e-01	ci left: 3.814505e-04	ci right 4.799036e-04	k: 300	n:700000
KS ci ratio: 8.631425e-03	ci left: 2.266082e-01	ci right 2.285740e-01	k: 159313	n:700000
MTTP   700000 perm   338 sec   (2072 perm/sec)   p_kst 2.275900e-01   p_cons 4.285714e-04   p_joint 4.304286e-03

Joint ci ratio: 7.004740e-02	ci left: 4.237681e-03	ci right 4.546666e-03	k: 3117	n:710000
Cons ci ratio: 2.244102e-01	ci left: 3.813941e-04	ci right 4.790954e-04	k: 304	n:710000
KS ci ratio: 8.570422e-03	ci left: 2.266153e-01	ci right 2.285672e-01	k: 161589	n:710000
MTTP   710000 perm   345 sec   (2056 perm/sec)   p_kst 2.275901e-01   p_cons 4.281690e-04   p_joint 4.390141e-03

Joint ci ratio: 6.958043e-02	ci left: 4.236139e-03	ci right 4.542870e-03	k: 3159	n:720000
Cons ci ratio: 2.233148e-01	ci left: 3.800299e-04	ci right 4.768413e-04	k: 307	n:720000
KS ci ratio: 8.511232e-03	ci left: 2.266000e-01	ci right 2.285383e-01	k: 163849	n:720000
MTTP   720000 perm   353 sec   (2040 perm/sec)   p_kst 2.275681e-01   p_cons 4.263889e-04   p_joint 4.387500e-03

Joint ci ratio: 6.909017e-02	ci left: 4.238685e-03	ci right 4.543351e-03	k: 3204	n:730000
Cons ci ratio: 2.222353e-01	ci left: 3.787043e-04	ci right 4.746478e-04	k: 310	n:730000
KS ci ratio: 8.453680e-03	ci left: 2.265675e-01	ci right 2.284922e-01	k: 166096	n:730000
MTTP   730000 perm   361 sec   (2024 perm/sec)   p_kst 2.275288e-01   p_cons 4.246575e-04   p_joint 4.389041e-03

Joint ci ratio: 6.863135e-02	ci left: 4.238513e-03	ci right 4.541063e-03	k: 3247	n:740000
Cons ci ratio: 2.211713e-01	ci left: 3.774156e-04	ci right 4.725125e-04	k: 313	n:740000
KS ci ratio: 8.394505e-03	ci left: 2.266518e-01	ci right 2.285638e-01	k: 168429	n:740000
MTTP   740000 perm   368 sec   (2009 perm/sec)   p_kst 2.276068e-01   p_cons 4.229730e-04   p_joint 4.387838e-03

Joint ci ratio: 6.826494e-02	ci left: 4.227866e-03	ci right 4.527982e-03	k: 3282	n:750000
Cons ci ratio: 2.208204e-01	ci left: 3.736428e-04	ci right 4.676194e-04	k: 314	n:750000
KS ci ratio: 8.337439e-03	ci left: 2.266967e-01	ci right 2.285960e-01	k: 170734	n:750000
MTTP   750000 perm   376 sec   (1994 perm/sec)   p_kst 2.276453e-01   p_cons 4.186667e-04   p_joint 4.376000e-03

Joint ci ratio: 6.467487e-02	ci left: 4.654906e-03	ci right 4.967308e-03	k: 3655	n:760000
Cons ci ratio: 2.201231e-01	ci left: 3.712127e-04	ci right 4.642433e-04	k: 316	n:760000
KS ci ratio: 8.349050e-03	ci left: 2.239013e-01	ci right 2.257798e-01	k: 170878	n:760000
MTTP   760000 perm   384 sec   (1979 perm/sec)   p_kst 2.248395e-01   p_cons 4.157895e-04   p_joint 4.809211e-03

Joint ci ratio: 6.411545e-02	ci left: 4.676233e-03	ci right 4.987250e-03	k: 3719	n:770000
Cons ci ratio: 2.187473e-01	ci left: 3.713010e-04	ci right 4.636940e-04	k: 320	n:770000
KS ci ratio: 8.293188e-03	ci left: 2.239691e-01	ci right 2.258355e-01	k: 173174	n:770000
MTTP   770000 perm   392 sec   (1965 perm/sec)   p_kst 2.249013e-01   p_cons 4.155844e-04   p_joint 4.829870e-03

Joint ci ratio: 6.648433e-02	ci left: 4.289622e-03	ci right 4.585872e-03	k: 3460	n:780000
Cons ci ratio: 2.157431e-01	ci left: 3.774516e-04	ci right 4.699143e-04	k: 329	n:780000
KS ci ratio: 8.240765e-03	ci left: 2.239367e-01	ci right 2.257910e-01	k: 175393	n:780000
MTTP   780000 perm   401 sec   (1947 perm/sec)   p_kst 2.248628e-01   p_cons 4.217949e-04   p_joint 4.435897e-03

Joint ci ratio: 6.609415e-02	ci left: 4.286361e-03	ci right 4.580582e-03	k: 3501	n:790000
Cons ci ratio: 2.141269e-01	ci left: 3.786622e-04	ci right 4.706353e-04	k: 334	n:790000
KS ci ratio: 8.186945e-03	ci left: 2.240062e-01	ci right 2.258489e-01	k: 177692	n:790000
MTTP   790000 perm   409 sec   (1933 perm/sec)   p_kst 2.249266e-01   p_cons 4.227848e-04   p_joint 4.431646e-03

Joint ci ratio: 6.768681e-02	ci left: 4.033650e-03	ci right 4.317459e-03	k: 3339	n:800000
Cons ci ratio: 2.125465e-01	ci left: 3.798450e-04	ci right 4.713358e-04	k: 339	n:800000
KS ci ratio: 8.137053e-03	ci left: 2.239505e-01	ci right 2.257815e-01	k: 179892	n:800000
MTTP   800000 perm   417 sec   (1920 perm/sec)   p_kst 2.248650e-01   p_cons 4.237500e-04   p_joint 4.173750e-03

Joint ci ratio: 6.738536e-02	ci left: 4.020263e-03	ci right 4.301820e-03	k: 3369	n:810000
Cons ci ratio: 2.119244e-01	ci left: 3.774934e-04	ci right 4.681170e-04	k: 341	n:810000
KS ci ratio: 8.087890e-03	ci left: 2.239036e-01	ci right 2.257231e-01	k: 182098	n:810000
MTTP   810000 perm   425 sec   (1906 perm/sec)   p_kst 2.248123e-01   p_cons 4.209877e-04   p_joint 4.159259e-03

Joint ci ratio: 6.696932e-02	ci left: 4.021594e-03	ci right 4.301439e-03	k: 3411	n:820000
Cons ci ratio: 2.094880e-01	ci left: 3.821313e-04	ci right 4.726783e-04	k: 349	n:820000
KS ci ratio: 8.039467e-03	ci left: 2.238639e-01	ci right 2.256721e-01	k: 184309	n:820000
MTTP   820000 perm   433 sec   (1892 perm/sec)   p_kst 2.247671e-01   p_cons 4.256098e-04   p_joint 4.159756e-03

Joint ci ratio: 6.751964e-02	ci left: 3.907983e-03	ci right 4.182243e-03	k: 3356	n:830000
Cons ci ratio: 2.088923e-01	ci left: 3.798106e-04	ci right 4.695191e-04	k: 351	n:830000
KS ci ratio: 7.990909e-03	ci left: 2.238686e-01	ci right 2.256659e-01	k: 186556	n:830000
MTTP   830000 perm   442 sec   (1879 perm/sec)   p_kst 2.247663e-01   p_cons 4.228916e-04   p_joint 4.043373e-03

Joint ci ratio: 6.930576e-02	ci left: 3.662524e-03	ci right 3.926631e-03	k: 3186	n:840000
Cons ci ratio: 2.068453e-01	ci left: 3.831887e-04	ci right 4.726960e-04	k: 358	n:840000
KS ci ratio: 7.941267e-03	ci left: 2.239588e-01	ci right 2.257455e-01	k: 188875	n:840000
MTTP   840000 perm   450 sec   (1866 perm/sec)   p_kst 2.248512e-01   p_cons 4.261905e-04   p_joint 3.792857e-03

Joint ci ratio: 6.017190e-02	ci left: 4.818706e-03	ci right 5.118801e-03	k: 4222	n:850000
Cons ci ratio: 2.051380e-01	ci left: 3.853754e-04	ci right 4.745573e-04	k: 364	n:850000
KS ci ratio: 7.894136e-03	ci left: 2.239763e-01	ci right 2.257526e-01	k: 191134	n:850000
MTTP   850000 perm   459 sec   (1853 perm/sec)   p_kst 2.248635e-01   p_cons 4.282353e-04   p_joint 4.967059e-03

Joint ci ratio: 6.036789e-02	ci left: 4.731746e-03	ci right 5.027418e-03	k: 4195	n:860000
Cons ci ratio: 2.043003e-01	ci left: 3.842038e-04	ci right 4.727062e-04	k: 367	n:860000
KS ci ratio: 7.848960e-03	ci left: 2.239436e-01	ci right 2.257094e-01	k: 193350	n:860000
MTTP   860000 perm   467 sec   (1841 perm/sec)   p_kst 2.248256e-01   p_cons 4.267442e-04   p_joint 4.877907e-03

Joint ci ratio: 5.994047e-02	ci left: 4.745287e-03	ci right 5.039634e-03	k: 4255	n:870000
Cons ci ratio: 2.021148e-01	ci left: 3.885153e-04	ci right 4.769353e-04	k: 375	n:870000
KS ci ratio: 7.803368e-03	ci left: 2.239645e-01	ci right 2.257201e-01	k: 195612	n:870000
MTTP   870000 perm   476 sec   (1828 perm/sec)   p_kst 2.248414e-01   p_cons 4.310345e-04   p_joint 4.890805e-03

Joint ci ratio: 5.966107e-02	ci left: 4.736137e-03	ci right 5.028500e-03	k: 4295	n:880000
Cons ci ratio: 2.005210e-01	ci left: 3.905749e-04	ci right 4.786769e-04	k: 381	n:880000
KS ci ratio: 7.757979e-03	ci left: 2.240110e-01	ci right 2.257567e-01	k: 197897	n:880000
MTTP   880000 perm   485 sec   (1816 perm/sec)   p_kst 2.248830e-01   p_cons 4.329545e-04   p_joint 4.880682e-03

Joint ci ratio: 5.954444e-02	ci left: 4.701736e-03	ci right 4.991388e-03	k: 4312	n:890000
Cons ci ratio: 1.997384e-01	ci left: 3.893883e-04	ci right 4.768380e-04	k: 384	n:890000
KS ci ratio: 7.714218e-03	ci left: 2.240183e-01	ci right 2.257542e-01	k: 200148	n:890000
MTTP   890000 perm   493 sec   (1804 perm/sec)   p_kst 2.248854e-01   p_cons 4.314607e-04   p_joint 4.844944e-03

Joint ci ratio: 5.927735e-02	ci left: 4.692184e-03	ci right 4.979906e-03	k: 4351	n:900000
Cons ci ratio: 1.989648e-01	ci left: 3.882287e-04	ci right 4.750394e-04	k: 387	n:900000
KS ci ratio: 7.670260e-03	ci left: 2.240677e-01	ci right 2.257941e-01	k: 202437	n:900000
MTTP   900000 perm   502 sec   (1792 perm/sec)   p_kst 2.249300e-01   p_cons 4.300000e-04   p_joint 4.834444e-03

Joint ci ratio: 5.914254e-02	ci left: 4.662272e-03	ci right 4.947488e-03	k: 4371	n:910000
Cons ci ratio: 1.984543e-01	ci left: 3.860508e-04	ci right 4.721262e-04	k: 389	n:910000
KS ci ratio: 7.628584e-03	ci left: 2.240458e-01	ci right 2.257626e-01	k: 204662	n:910000
MTTP   910000 perm   511 sec   (1780 perm/sec)   p_kst 2.249033e-01   p_cons 4.274725e-04   p_joint 4.803297e-03

Joint ci ratio: 6.229308e-02	ci left: 4.152331e-03	ci right 4.420370e-03	k: 3942	n:920000
Cons ci ratio: 1.976955e-01	ci left: 3.849537e-04	ci right 4.704168e-04	k: 392	n:920000
KS ci ratio: 7.588313e-03	ci left: 2.239907e-01	ci right 2.256980e-01	k: 206856	n:920000
MTTP   920000 perm   520 sec   (1768 perm/sec)   p_kst 2.248435e-01   p_cons 4.260870e-04   p_joint 4.284783e-03

Joint ci ratio: 5.705879e-02	ci left: 4.905352e-03	ci right 5.194518e-03	k: 4695	n:930000
Cons ci ratio: 1.966971e-01	ci left: 3.849032e-04	ci right 4.698718e-04	k: 396	n:930000
KS ci ratio: 7.546857e-03	ci left: 2.240206e-01	ci right 2.257187e-01	k: 209128	n:930000
MTTP   930000 perm   529 sec   (1757 perm/sec)   p_kst 2.248688e-01   p_cons 4.258065e-04   p_joint 5.048387e-03

Joint ci ratio: 5.671542e-02	ci left: 4.912944e-03	ci right 5.200757e-03	k: 4752	n:940000
Cons ci ratio: 1.947443e-01	ci left: 3.889022e-04	ci right 4.738002e-04	k: 404	n:940000
KS ci ratio: 7.505547e-03	ci left: 2.240743e-01	ci right 2.257635e-01	k: 211423	n:940000
MTTP   940000 perm   539 sec   (1745 perm/sec)   p_kst 2.249181e-01   p_cons 4.297872e-04   p_joint 5.055319e-03

Joint ci ratio: 5.740684e-02	ci left: 4.743967e-03	ci right 5.025381e-03	k: 4639	n:950000
Cons ci ratio: 1.937897e-01	ci left: 3.888142e-04	ci right 4.732279e-04	k: 408	n:950000
KS ci ratio: 7.466710e-03	ci left: 2.240429e-01	ci right 2.257230e-01	k: 213638	n:950000
MTTP   950000 perm   548 sec   (1734 perm/sec)   p_kst 2.248821e-01   p_cons 4.294737e-04   p_joint 4.883158e-03

Joint ci ratio: 5.712447e-02	ci left: 4.741781e-03	ci right 5.021636e-03	k: 4685	n:960000
Cons ci ratio: 1.933178e-01	ci left: 3.867464e-04	ci right 4.704826e-04	k: 410	n:960000
KS ci ratio: 7.427516e-03	ci left: 2.240568e-01	ci right 2.257282e-01	k: 215896	n:960000
MTTP   960000 perm   557 sec   (1723 perm/sec)   p_kst 2.248917e-01   p_cons 4.270833e-04   p_joint 4.880208e-03

Joint ci ratio: 5.575551e-02	ci left: 4.928710e-03	ci right 5.212402e-03	k: 4917	n:970000
Cons ci ratio: 1.916921e-01	ci left: 3.896281e-04	ci right 4.731961e-04	k: 417	n:970000
KS ci ratio: 7.388299e-03	ci left: 2.241003e-01	ci right 2.257632e-01	k: 218183	n:970000
MTTP   970000 perm   567 sec   (1712 perm/sec)   p_kst 2.249309e-01   p_cons 4.298969e-04   p_joint 5.069072e-03

Joint ci ratio: 5.600356e-02	ci left: 4.835146e-03	ci right 5.114731e-03	k: 4874	n:980000
Cons ci ratio: 1.901066e-01	ci left: 3.924538e-04	ci right 4.758513e-04	k: 424	n:980000
KS ci ratio: 7.350148e-03	ci left: 2.241216e-01	ci right 2.257760e-01	k: 220449	n:980000
MTTP   980000 perm   576 sec   (1701 perm/sec)   p_kst 2.249480e-01   p_cons 4.326531e-04   p_joint 4.973469e-03

Joint ci ratio: 5.345815e-02	ci left: 5.257579e-03	ci right 5.547347e-03	k: 5347	n:990000
Cons ci ratio: 1.892183e-01	ci left: 3.923382e-04	ci right 4.752767e-04	k: 428	n:990000
KS ci ratio: 7.312751e-03	ci left: 2.241344e-01	ci right 2.257804e-01	k: 222707	n:990000
MTTP   990000 perm   586 sec   (1690 perm/sec)   p_kst 2.249566e-01   p_cons 4.323232e-04   p_joint 5.401010e-03

Joint ci ratio: 5.534289e-02	ci left: 4.853816e-03	ci right 5.131063e-03	k: 4991	n:1000000
Cons ci ratio: 1.887790e-01	ci left: 3.903202e-04	ci right 4.726186e-04	k: 430	n:1000000
KS ci ratio: 7.276254e-03	ci left: 2.241309e-01	ci right 2.257687e-01	k: 224949	n:1000000
MTTP   1000000 perm   596 sec   (1679 perm/sec)   p_kst 2.249490e-01   p_cons 4.300000e-04   p_joint 4.991000e-03

Joint ci ratio: 5.506231e-02	ci left: 4.855556e-03	ci right 5.131453e-03	k: 5042	n:1010000
Cons ci ratio: 1.874784e-01	ci left: 3.921165e-04	ci right 4.741592e-04	k: 436	n:1010000
KS ci ratio: 7.239907e-03	ci left: 2.241464e-01	ci right 2.257760e-01	k: 227210	n:1010000
MTTP   1010000 perm   605 sec   (1668 perm/sec)   p_kst 2.249604e-01   p_cons 4.316832e-04   p_joint 4.992079e-03

Joint ci ratio: 5.479676e-02	ci left: 4.855332e-03	ci right 5.129843e-03	k: 5091	n:1020000
Cons ci ratio: 1.862043e-01	ci left: 3.938794e-04	ci right 4.756677e-04	k: 442	n:1020000
KS ci ratio: 7.205922e-03	ci left: 2.240734e-01	ci right 2.256948e-01	k: 229381	n:1020000
MTTP   1020000 perm   615 sec   (1658 perm/sec)   p_kst 2.248833e-01   p_cons 4.333333e-04   p_joint 4.991176e-03

Joint ci ratio: 5.490657e-02	ci left: 4.789037e-03	ci right 5.060360e-03	k: 5071	n:1030000
Cons ci ratio: 1.857856e-01	ci left: 3.919067e-04	ci right 4.730816e-04	k: 444	n:1030000
KS ci ratio: 7.172352e-03	ci left: 2.240048e-01	ci right 2.256181e-01	k: 231555	n:1030000
MTTP   1030000 perm   625 sec   (1648 perm/sec)   p_kst 2.248107e-01   p_cons 4.310680e-04   p_joint 4.923301e-03

Joint ci ratio: 5.476699e-02	ci left: 4.767645e-03	ci right 5.037047e-03	k: 5097	n:1040000
Cons ci ratio: 1.843411e-01	ci left: 3.945573e-04	ci right 4.755750e-04	k: 451	n:1040000
KS ci ratio: 7.137513e-03	ci left: 2.240220e-01	ci right 2.256276e-01	k: 233817	n:1040000
MTTP   1040000 perm   635 sec   (1638 perm/sec)   p_kst 2.248240e-01   p_cons 4.336538e-04   p_joint 4.900962e-03

Joint ci ratio: 5.645673e-02	ci left: 4.441414e-03	ci right 4.700378e-03	k: 4798	n:1050000
Cons ci ratio: 1.837325e-01	ci left: 3.935252e-04	ci right 4.740343e-04	k: 454	n:1050000
KS ci ratio: 7.103448e-03	ci left: 2.240256e-01	ci right 2.256235e-01	k: 236065	n:1050000
MTTP   1050000 perm   645 sec   (1628 perm/sec)   p_kst 2.248238e-01   p_cons 4.323810e-04   p_joint 4.569524e-03

Joint ci ratio: 5.615897e-02	ci left: 4.446950e-03	ci right 4.704825e-03	k: 4849	n:1060000
Cons ci ratio: 1.829302e-01	ci left: 3.934131e-04	ci right 4.735089e-04	k: 458	n:1060000
KS ci ratio: 7.069369e-03	ci left: 2.240536e-01	ci right 2.256441e-01	k: 238339	n:1060000
MTTP   1060000 perm   655 sec   (1618 perm/sec)   p_kst 2.248481e-01   p_cons 4.320755e-04   p_joint 4.574528e-03

Joint ci ratio: 5.588879e-02	ci left: 4.448700e-03	ci right 4.705395e-03	k: 4896	n:1070000
Cons ci ratio: 1.819419e-01	ci left: 3.941958e-04	ci right 4.739696e-04	k: 463	n:1070000
KS ci ratio: 7.037361e-03	ci left: 2.240028e-01	ci right 2.255856e-01	k: 240529	n:1070000
MTTP   1070000 perm   665 sec   (1608 perm/sec)   p_kst 2.247935e-01   p_cons 4.327103e-04   p_joint 4.575701e-03

Joint ci ratio: 5.324559e-02	ci left: 4.860532e-03	ci right 5.127319e-03	k: 5392	n:1080000
Cons ci ratio: 1.807767e-01	ci left: 3.958492e-04	ci right 4.753884e-04	k: 469	n:1080000
KS ci ratio: 7.004331e-03	ci left: 2.240250e-01	ci right 2.256006e-01	k: 242797	n:1080000
MTTP   1080000 perm   676 sec   (1598 perm/sec)   p_kst 2.248120e-01   p_cons 4.342593e-04   p_joint 4.992593e-03

Joint ci ratio: 5.300046e-02	ci left: 4.861202e-03	ci right 5.126760e-03	k: 5442	n:1090000
Cons ci ratio: 1.800123e-01	ci left: 3.957216e-04	ci right 4.748623e-04	k: 473	n:1090000
KS ci ratio: 6.972221e-03	ci left: 2.240239e-01	ci right 2.255922e-01	k: 245040	n:1090000
MTTP   1090000 perm   686 sec   (1588 perm/sec)   p_kst 2.248073e-01   p_cons 4.339450e-04   p_joint 4.992661e-03

Joint ci ratio: 5.003458e-02	ci left: 5.410221e-03	ci right 5.688756e-03	k: 6103	n:1100000
Cons ci ratio: 1.794455e-01	ci left: 3.947287e-04	ci right 4.733953e-04	k: 476	n:1100000
KS ci ratio: 6.941020e-03	ci left: 2.239993e-01	ci right 2.255604e-01	k: 247257	n:1100000
MTTP   1100000 perm   697 sec   (1578 perm/sec)   p_kst 2.247791e-01   p_cons 4.327273e-04   p_joint 5.548182e-03

Joint ci ratio: 5.007710e-02	ci left: 5.352580e-03	ci right 5.628388e-03	k: 6093	n:1110000
Cons ci ratio: 1.786978e-01	ci left: 3.946147e-04	ci right 4.728954e-04	k: 480	n:1110000
KS ci ratio: 6.909966e-03	ci left: 2.239886e-01	ci right 2.255426e-01	k: 249489	n:1110000
MTTP   1110000 perm   708 sec   (1569 perm/sec)   p_kst 2.247649e-01   p_cons 4.324324e-04   p_joint 5.489189e-03

Joint ci ratio: 5.187633e-02	ci left: 4.940711e-03	ci right 5.204716e-03	k: 5680	n:1120000
Cons ci ratio: 1.781432e-01	ci left: 3.936503e-04	ci right 4.714712e-04	k: 483	n:1120000
KS ci ratio: 6.879025e-03	ci left: 2.239933e-01	ci right 2.255403e-01	k: 251738	n:1120000
MTTP   1120000 perm   718 sec   (1559 perm/sec)   p_kst 2.247661e-01   p_cons 4.312500e-04   p_joint 5.071429e-03

Joint ci ratio: 5.166315e-02	ci left: 4.938042e-03	ci right 5.200788e-03	k: 5727	n:1130000
Cons ci ratio: 1.779597e-01	ci left: 3.910121e-04	ci right 4.682233e-04	k: 484	n:1130000
KS ci ratio: 6.847713e-03	ci left: 2.240376e-01	ci right 2.255779e-01	k: 254032	n:1130000
MTTP   1130000 perm   729 sec   (1550 perm/sec)   p_kst 2.248071e-01   p_cons 4.283186e-04   p_joint 5.068142e-03

Joint ci ratio: 5.140785e-02	ci left: 4.944082e-03	ci right 5.205811e-03	k: 5784	n:1140000
Cons ci ratio: 1.779601e-01	ci left: 3.875821e-04	ci right 4.641162e-04	k: 484	n:1140000
KS ci ratio: 6.817254e-03	ci left: 2.240594e-01	ci right 2.255929e-01	k: 256301	n:1140000
MTTP   1140000 perm   740 sec   (1541 perm/sec)   p_kst 2.248254e-01   p_cons 4.245614e-04   p_joint 5.073684e-03

Joint ci ratio: 5.121361e-02	ci left: 4.938859e-03	ci right 5.199295e-03	k: 5828	n:1150000
Cons ci ratio: 1.775945e-01	ci left: 3.858735e-04	ci right 4.618969e-04	k: 486	n:1150000
KS ci ratio: 6.786894e-03	ci left: 2.240964e-01	ci right 2.256233e-01	k: 258588	n:1150000
MTTP   1150000 perm   750 sec   (1533 perm/sec)   p_kst 2.248591e-01   p_cons 4.226087e-04   p_joint 5.067826e-03

Joint ci ratio: 5.128996e-02	ci left: 4.881812e-03	ci right 5.139635e-03	k: 5811	n:1160000
Cons ci ratio: 1.763315e-01	ci left: 3.883143e-04	ci right 4.642165e-04	k: 493	n:1160000
KS ci ratio: 6.757871e-03	ci left: 2.240845e-01	ci right 2.256048e-01	k: 260819	n:1160000
MTTP   1160000 perm   761 sec   (1524 perm/sec)   p_kst 2.248440e-01   p_cons 4.250000e-04   p_joint 5.009483e-03

Joint ci ratio: 5.079283e-02	ci left: 4.936283e-03	ci right 5.194382e-03	k: 5925	n:1170000
Cons ci ratio: 1.754458e-01	ci left: 3.890807e-04	ci right 4.647102e-04	k: 498	n:1170000
KS ci ratio: 6.729118e-03	ci left: 2.240780e-01	ci right 2.255918e-01	k: 263056	n:1170000
MTTP   1170000 perm   772 sec   (1515 perm/sec)   p_kst 2.248342e-01   p_cons 4.256410e-04   p_joint 5.064103e-03

Joint ci ratio: 5.052895e-02	ci left: 4.946328e-03	ci right 5.203569e-03	k: 5987	n:1180000
Cons ci ratio: 1.745733e-01	ci left: 3.898351e-04	ci right 4.651947e-04	k: 503	n:1180000
KS ci ratio: 6.700305e-03	ci left: 2.240936e-01	ci right 2.256010e-01	k: 265319	n:1180000
MTTP   1180000 perm   783 sec   (1506 perm/sec)   p_kst 2.248466e-01   p_cons 4.262712e-04   p_joint 5.073729e-03

Joint ci ratio: 5.030676e-02	ci left: 4.948738e-03	ci right 5.204940e-03	k: 6040	n:1190000
Cons ci ratio: 1.744006e-01	ci left: 3.873628e-04	ci right 4.621626e-04	k: 504	n:1190000
KS ci ratio: 6.670959e-03	ci left: 2.241560e-01	ci right 2.256571e-01	k: 267638	n:1190000
MTTP   1190000 perm   795 sec   (1497 perm/sec)   p_kst 2.249059e-01   p_cons 4.235294e-04   p_joint 5.075630e-03

Joint ci ratio: 4.826996e-02	ci left: 5.333873e-03	ci right 5.598523e-03	k: 6558	n:1200000
Cons ci ratio: 1.735436e-01	ci left: 3.881200e-04	ci right 4.626591e-04	k: 509	n:1200000
KS ci ratio: 6.642916e-03	ci left: 2.241690e-01	ci right 2.256640e-01	k: 269899	n:1200000
MTTP   1200000 perm   806 sec   (1489 perm/sec)   p_kst 2.249158e-01   p_cons 4.241667e-04   p_joint 5.465000e-03

Joint ci ratio: 4.809809e-02	ci left: 5.328166e-03	ci right 5.591565e-03	k: 6605	n:1210000
Cons ci ratio: 1.732044e-01	ci left: 3.864936e-04	ci right 4.605601e-04	k: 511	n:1210000
KS ci ratio: 6.614063e-03	ci left: 2.242430e-01	ci right 2.257319e-01	k: 272234	n:1210000
MTTP   1210000 perm   817 sec   (1481 perm/sec)   p_kst 2.249868e-01   p_cons 4.223140e-04   p_joint 5.458678e-03

Joint ci ratio: 4.793529e-02	ci left: 5.320934e-03	ci right 5.583061e-03	k: 6650	n:1220000
Cons ci ratio: 1.730358e-01	ci left: 3.841097e-04	ci right 4.576402e-04	k: 512	n:1220000
KS ci ratio: 6.587162e-03	ci left: 2.242322e-01	ci right 2.257150e-01	k: 274467	n:1220000
MTTP   1220000 perm   829 sec   (1472 perm/sec)   p_kst 2.249730e-01   p_cons 4.196721e-04   p_joint 5.450820e-03

Joint ci ratio: 4.773473e-02	ci left: 5.322659e-03	ci right 5.583744e-03	k: 6706	n:1230000
Cons ci ratio: 1.712094e-01	ci left: 3.895448e-04	ci right 4.632474e-04	k: 523	n:1230000
KS ci ratio: 6.560143e-03	ci left: 2.242452e-01	ci right 2.257219e-01	k: 276729	n:1230000
MTTP   1230000 perm   840 sec   (1464 perm/sec)   p_kst 2.249829e-01   p_cons 4.252033e-04   p_joint 5.452033e-03

Joint ci ratio: 4.753666e-02	ci left: 5.324357e-03	ci right 5.584412e-03	k: 6762	n:1240000
Cons ci ratio: 1.705597e-01	ci left: 3.894911e-04	ci right 4.628752e-04	k: 527	n:1240000
KS ci ratio: 6.533831e-03	ci left: 2.242379e-01	ci right 2.257086e-01	k: 278966	n:1240000
MTTP   1240000 perm   852 sec   (1456 perm/sec)   p_kst 2.249726e-01   p_cons 4.250000e-04   p_joint 5.453226e-03

Joint ci ratio: 4.732010e-02	ci left: 5.330775e-03	ci right 5.589925e-03	k: 6824	n:1250000
Cons ci ratio: 1.694400e-01	ci left: 3.917370e-04	ci right 4.650102e-04	k: 534	n:1250000
KS ci ratio: 6.507176e-03	ci left: 2.242658e-01	ci right 2.257307e-01	k: 281247	n:1250000
MTTP   1250000 perm   863 sec   (1448 perm/sec)   p_kst 2.249976e-01   p_cons 4.272000e-04   p_joint 5.459200e-03

Joint ci ratio: 4.770567e-02	ci left: 5.202979e-03	ci right 5.458033e-03	k: 6715	n:1260000
Cons ci ratio: 1.684977e-01	ci left: 3.931885e-04	ci right 4.662827e-04	k: 540	n:1260000
KS ci ratio: 6.480388e-03	ci left: 2.243179e-01	ci right 2.257770e-01	k: 283559	n:1260000
MTTP   1260000 perm   875 sec   (1440 perm/sec)   p_kst 2.250468e-01   p_cons 4.285714e-04   p_joint 5.329365e-03

Joint ci ratio: 4.752914e-02	ci left: 5.200912e-03	ci right 5.454896e-03	k: 6765	n:1270000
Cons ci ratio: 1.681873e-01	ci left: 3.916010e-04	ci right 4.642523e-04	k: 542	n:1270000
KS ci ratio: 6.455516e-03	ci left: 2.242834e-01	ci right 2.257367e-01	k: 285762	n:1270000
MTTP   1270000 perm   887 sec   (1432 perm/sec)   p_kst 2.250094e-01   p_cons 4.267717e-04   p_joint 5.326772e-03

Joint ci ratio: 4.919116e-02	ci left: 4.815258e-03	ci right 5.058865e-03	k: 6318	n:1280000
Cons ci ratio: 1.678785e-01	ci left: 3.900384e-04	ci right 4.622535e-04	k: 544	n:1280000
KS ci ratio: 6.429719e-03	ci left: 2.243151e-01	ci right 2.257627e-01	k: 288049	n:1280000
MTTP   1280000 perm   898 sec   (1425 perm/sec)   p_kst 2.250383e-01   p_cons 4.250000e-04   p_joint 4.935938e-03

Joint ci ratio: 4.897836e-02	ci left: 4.820044e-03	ci right 5.062808e-03	k: 6373	n:1290000
Cons ci ratio: 1.672659e-01	ci left: 3.899855e-04	ci right 4.619008e-04	k: 548	n:1290000
KS ci ratio: 6.404740e-03	ci left: 2.243183e-01	ci right 2.257604e-01	k: 290300	n:1290000
MTTP   1290000 perm   910 sec   (1417 perm/sec)   p_kst 2.250388e-01   p_cons 4.248062e-04   p_joint 4.940310e-03

Joint ci ratio: 4.897544e-02	ci left: 4.783724e-03	ci right 5.024644e-03	k: 6374	n:1300000
Cons ci ratio: 1.668108e-01	ci left: 3.891969e-04	ci right 4.607518e-04	k: 551	n:1300000
KS ci ratio: 6.379839e-03	ci left: 2.243331e-01	ci right 2.257696e-01	k: 292566	n:1300000
MTTP   1300000 perm   922 sec   (1409 perm/sec)   p_kst 2.250508e-01   p_cons 4.238462e-04   p_joint 4.903077e-03

Joint ci ratio: 4.879593e-02	ci left: 4.782646e-03	ci right 5.022604e-03	k: 6421	n:1310000
Cons ci ratio: 1.668111e-01	ci left: 3.862258e-04	ci right 4.572347e-04	k: 551	n:1310000
KS ci ratio: 6.355408e-03	ci left: 2.243378e-01	ci right 2.257688e-01	k: 294819	n:1310000
MTTP   1310000 perm   935 sec   (1402 perm/sec)   p_kst 2.250527e-01   p_cons 4.206107e-04   p_joint 4.901527e-03

Joint ci ratio: 4.891178e-02	ci left: 4.723961e-03	ci right 4.961553e-03	k: 6391	n:1320000
Cons ci ratio: 1.663597e-01	ci left: 3.854779e-04	ci right 4.561382e-04	k: 554	n:1320000
KS ci ratio: 6.331708e-03	ci left: 2.243174e-01	ci right 2.257429e-01	k: 297039	n:1320000
MTTP   1320000 perm   947 sec   (1394 perm/sec)   p_kst 2.250295e-01   p_cons 4.196970e-04   p_joint 4.841667e-03

Joint ci ratio: 4.894731e-02	ci left: 4.681756e-03	ci right 4.917401e-03	k: 6382	n:1330000
Cons ci ratio: 1.657634e-01	ci left: 3.854621e-04	ci right 4.558410e-04	k: 558	n:1330000
KS ci ratio: 6.308462e-03	ci left: 2.242868e-01	ci right 2.257069e-01	k: 299245	n:1330000
MTTP   1330000 perm   959 sec   (1387 perm/sec)   p_kst 2.249962e-01   p_cons 4.195489e-04   p_joint 4.798496e-03

Joint ci ratio: 4.887899e-02	ci left: 4.660085e-03	ci right 4.894303e-03	k: 6400	n:1340000
Cons ci ratio: 1.648808e-01	ci left: 3.868779e-04	ci right 4.571019e-04	k: 564	n:1340000
KS ci ratio: 6.285229e-03	ci left: 2.242701e-01	ci right 2.256848e-01	k: 301469	n:1340000
MTTP   1340000 perm   971 sec   (1380 perm/sec)   p_kst 2.249769e-01   p_cons 4.208955e-04   p_joint 4.776119e-03

Joint ci ratio: 4.869674e-02	ci left: 4.660687e-03	ci right 4.894038e-03	k: 6448	n:1350000
Cons ci ratio: 1.643003e-01	ci left: 3.868530e-04	ci right 4.568008e-04	k: 568	n:1350000
KS ci ratio: 6.261704e-03	ci left: 2.242840e-01	ci right 2.256935e-01	k: 303734	n:1350000
MTTP   1350000 perm   984 sec   (1372 perm/sec)   p_kst 2.249881e-01   p_cons 4.207407e-04   p_joint 4.776296e-03

Joint ci ratio: 4.772579e-02	ci left: 4.818205e-03	ci right 5.054499e-03	k: 6712	n:1360000
Cons ci ratio: 1.635830e-01	ci left: 3.875342e-04	ci right 4.572692e-04	k: 573	n:1360000
KS ci ratio: 6.238245e-03	ci left: 2.243087e-01	ci right 2.257131e-01	k: 306014	n:1360000
MTTP   1360000 perm   996 sec   (1365 perm/sec)   p_kst 2.250103e-01   p_cons 4.213235e-04   p_joint 4.935294e-03

Joint ci ratio: 4.787018e-02	ci left: 4.754183e-03	ci right 4.988063e-03	k: 6672	n:1370000
Cons ci ratio: 1.634409e-01	ci left: 3.854055e-04	ci right 4.546913e-04	k: 574	n:1370000
KS ci ratio: 6.215268e-03	ci left: 2.243207e-01	ci right 2.257199e-01	k: 308277	n:1370000
MTTP   1370000 perm   1009 sec   (1358 perm/sec)   p_kst 2.250197e-01   p_cons 4.189781e-04   p_joint 4.870073e-03

Joint ci ratio: 4.769538e-02	ci left: 4.754816e-03	ci right 4.987849e-03	k: 6721	n:1380000
Cons ci ratio: 1.627349e-01	ci left: 3.860880e-04	ci right 4.551673e-04	k: 579	n:1380000
KS ci ratio: 6.192402e-03	ci left: 2.243404e-01	ci right 2.257346e-01	k: 310551	n:1380000
MTTP   1380000 perm   1021 sec   (1351 perm/sec)   p_kst 2.250370e-01   p_cons 4.195652e-04   p_joint 4.870290e-03

Joint ci ratio: 4.547232e-02	ci left: 5.197038e-03	ci right 5.439563e-03	k: 7391	n:1390000
Cons ci ratio: 1.621766e-01	ci left: 3.860711e-04	ci right 4.548873e-04	k: 583	n:1390000
KS ci ratio: 6.170906e-03	ci left: 2.242967e-01	ci right 2.256858e-01	k: 312737	n:1390000
MTTP   1390000 perm   1034 sec   (1344 perm/sec)   p_kst 2.249906e-01   p_cons 4.194245e-04   p_joint 5.317266e-03

Joint ci ratio: 4.530711e-02	ci left: 5.198050e-03	ci right 5.439718e-03	k: 7445	n:1400000
Cons ci ratio: 1.614867e-01	ci left: 3.867402e-04	ci right 4.553541e-04	k: 588	n:1400000
KS ci ratio: 6.147920e-03	ci left: 2.243506e-01	ci right 2.257348e-01	k: 315059	n:1400000
MTTP   1400000 perm   1047 sec   (1338 perm/sec)   p_kst 2.250421e-01   p_cons 4.200000e-04   p_joint 5.317857e-03

Joint ci ratio: 4.518612e-02	ci left: 5.189232e-03	ci right 5.429829e-03	k: 7485	n:1410000
Cons ci ratio: 1.608056e-01	ci left: 3.874005e-04	ci right 4.558136e-04	k: 593	n:1410000
KS ci ratio: 6.126559e-03	ci left: 2.243258e-01	ci right 2.257051e-01	k: 317271	n:1410000
MTTP   1410000 perm   1060 sec   (1331 perm/sec)   p_kst 2.250149e-01   p_cons 4.205674e-04   p_joint 5.308511e-03

Joint ci ratio: 4.504804e-02	ci left: 5.184716e-03	ci right 5.424350e-03	k: 7531	n:1420000
Cons ci ratio: 1.602669e-01	ci left: 3.873761e-04	ci right 4.555336e-04	k: 597	n:1420000
KS ci ratio: 6.105382e-03	ci left: 2.243035e-01	ci right 2.256779e-01	k: 319486	n:1420000
MTTP   1420000 perm   1073 sec   (1324 perm/sec)   p_kst 2.249901e-01   p_cons 4.204225e-04   p_joint 5.303521e-03

Joint ci ratio: 4.487551e-02	ci left: 5.188563e-03	ci right 5.427433e-03	k: 7589	n:1430000
Cons ci ratio: 1.597336e-01	ci left: 3.873524e-04	ci right 4.552571e-04	k: 601	n:1430000
KS ci ratio: 6.083849e-03	ci left: 2.243144e-01	ci right 2.256839e-01	k: 321748	n:1430000
MTTP   1430000 perm   1085 sec   (1317 perm/sec)   p_kst 2.249986e-01   p_cons 4.202797e-04   p_joint 5.306993e-03

Joint ci ratio: 4.514622e-02	ci left: 5.090729e-03	ci right 5.326545e-03	k: 7499	n:1440000
Cons ci ratio: 1.592055e-01	ci left: 3.873293e-04	ci right 4.549842e-04	k: 605	n:1440000
KS ci ratio: 6.063219e-03	ci left: 2.242863e-01	ci right 2.256510e-01	k: 323954	n:1440000
MTTP   1440000 perm   1098 sec   (1311 perm/sec)   p_kst 2.249681e-01   p_cons 4.201389e-04   p_joint 5.207639e-03

Joint ci ratio: 4.501449e-02	ci left: 5.085623e-03	ci right 5.320498e-03	k: 7543	n:1450000
Cons ci ratio: 1.589436e-01	ci left: 3.859825e-04	ci right 4.532805e-04	k: 607	n:1450000
KS ci ratio: 6.042415e-03	ci left: 2.242806e-01	ci right 2.256405e-01	k: 326192	n:1450000
MTTP   1450000 perm   1112 sec   (1304 perm/sec)   p_kst 2.249600e-01   p_cons 4.186207e-04   p_joint 5.202069e-03

Joint ci ratio: 4.523278e-02	ci left: 5.002027e-03	ci right 5.234190e-03	k: 7471	n:1460000
Cons ci ratio: 1.584233e-01	ci left: 3.859697e-04	ci right 4.530243e-04	k: 611	n:1460000
KS ci ratio: 6.022356e-03	ci left: 2.242442e-01	ci right 2.255994e-01	k: 328385	n:1460000
MTTP   1460000 perm   1125 sec   (1298 perm/sec)   p_kst 2.249212e-01   p_cons 4.184932e-04   p_joint 5.117123e-03

Joint ci ratio: 4.508222e-02	ci left: 5.001629e-03	ci right 5.232981e-03	k: 7521	n:1470000
Cons ci ratio: 1.576523e-01	ci left: 3.872643e-04	ci right 4.541854e-04	k: 617	n:1470000
KS ci ratio: 6.000879e-03	ci left: 2.243021e-01	ci right 2.256528e-01	k: 330716	n:1470000
MTTP   1470000 perm   1138 sec   (1291 perm/sec)   p_kst 2.249769e-01   p_cons 4.197279e-04   p_joint 5.116327e-03

Joint ci ratio: 4.408949e-02	ci left: 5.195683e-03	ci right 5.430584e-03	k: 7862	n:1480000
Cons ci ratio: 1.565165e-01	ci left: 3.904897e-04	ci right 4.574364e-04	k: 626	n:1480000
KS ci ratio: 5.980592e-03	ci left: 2.243031e-01	ci right 2.256493e-01	k: 332964	n:1480000
MTTP   1480000 perm   1152 sec   (1285 perm/sec)   p_kst 2.249757e-01   p_cons 4.229730e-04   p_joint 5.312162e-03

Joint ci ratio: 4.396678e-02	ci left: 5.190017e-03	ci right 5.423993e-03	k: 7906	n:1490000
Cons ci ratio: 1.560196e-01	ci left: 3.904486e-04	ci right 4.571559e-04	k: 630	n:1490000
KS ci ratio: 5.960154e-03	ci left: 2.243250e-01	ci right 2.256667e-01	k: 335243	n:1490000
MTTP   1490000 perm   1165 sec   (1279 perm/sec)   p_kst 2.249953e-01   p_cons 4.228188e-04   p_joint 5.306040e-03

Joint ci ratio: 4.381463e-02	ci left: 5.191681e-03	ci right 5.424902e-03	k: 7961	n:1500000
Cons ci ratio: 1.551612e-01	ci left: 3.923306e-04	ci right 4.589563e-04	k: 637	n:1500000
KS ci ratio: 5.939754e-03	ci left: 2.243566e-01	ci right 2.256938e-01	k: 337537	n:1500000
MTTP   1500000 perm   1179 sec   (1273 perm/sec)   p_kst 2.250247e-01   p_cons 4.246667e-04   p_joint 5.307333e-03

Joint ci ratio: 4.607450e-02	ci left: 4.660920e-03	ci right 4.881383e-03	k: 7203	n:1510000
Cons ci ratio: 1.546771e-01	ci left: 3.922787e-04	ci right 4.586685e-04	k: 641	n:1510000
KS ci ratio: 5.920056e-03	ci left: 2.243586e-01	ci right 2.256914e-01	k: 339787	n:1510000
MTTP   1510000 perm   1192 sec   (1266 perm/sec)   p_kst 2.250245e-01   p_cons 4.245033e-04   p_joint 4.770199e-03

Joint ci ratio: 4.350418e-02	ci left: 5.197551e-03	ci right 5.429340e-03	k: 8075	n:1520000
Cons ci ratio: 1.541975e-01	ci left: 3.922278e-04	ci right 4.583841e-04	k: 645	n:1520000
KS ci ratio: 5.900753e-03	ci left: 2.243488e-01	ci right 2.256772e-01	k: 342019	n:1520000
MTTP   1520000 perm   1206 sec   (1261 perm/sec)   p_kst 2.250125e-01   p_cons 4.243421e-04   p_joint 5.312500e-03

Joint ci ratio: 4.318093e-02	ci left: 5.241811e-03	ci right 5.473793e-03	k: 8196	n:1530000
Cons ci ratio: 1.540785e-01	ci left: 3.902926e-04	ci right 4.560670e-04	k: 646	n:1530000
KS ci ratio: 5.881627e-03	ci left: 2.243398e-01	ci right 2.256638e-01	k: 344252	n:1530000
MTTP   1530000 perm   1219 sec   (1255 perm/sec)   p_kst 2.250013e-01   p_cons 4.222222e-04   p_joint 5.356863e-03

Joint ci ratio: 4.305250e-02	ci left: 5.239248e-03	ci right 5.470410e-03	k: 8245	n:1540000
Cons ci ratio: 1.537225e-01	ci left: 3.896312e-04	ci right 4.551285e-04	k: 649	n:1540000
KS ci ratio: 5.862794e-03	ci left: 2.243245e-01	ci right 2.256441e-01	k: 346475	n:1540000
MTTP   1540000 perm   1233 sec   (1249 perm/sec)   p_kst 2.249838e-01   p_cons 4.214286e-04   p_joint 5.353896e-03

Joint ci ratio: 4.290183e-02	ci left: 5.242464e-03	ci right 5.472939e-03	k: 8303	n:1550000
Cons ci ratio: 1.531347e-01	ci left: 3.902195e-04	ci right 4.555418e-04	k: 654	n:1550000
KS ci ratio: 5.843698e-03	ci left: 2.243357e-01	ci right 2.256511e-01	k: 348739	n:1550000
MTTP   1550000 perm   1247 sec   (1243 perm/sec)   p_kst 2.249929e-01   p_cons 4.219355e-04   p_joint 5.356774e-03

Joint ci ratio: 4.276558e-02	ci left: 5.242469e-03	ci right 5.472194e-03	k: 8356	n:1560000
Cons ci ratio: 1.529015e-01	ci left: 3.889510e-04	ci right 4.539528e-04	k: 656	n:1560000
KS ci ratio: 5.825334e-03	ci left: 2.243142e-01	ci right 2.256253e-01	k: 350952	n:1560000
MTTP   1560000 perm   1260 sec   (1238 perm/sec)   p_kst 2.249692e-01   p_cons 4.205128e-04   p_joint 5.356410e-03

Joint ci ratio: 4.265357e-02	ci left: 5.236803e-03	ci right 5.465664e-03	k: 8400	n:1570000
Cons ci ratio: 1.522080e-01	ci left: 3.901494e-04	ci right 4.550288e-04	k: 662	n:1570000
KS ci ratio: 5.807110e-03	ci left: 2.242948e-01	ci right 2.256017e-01	k: 353168	n:1570000
MTTP   1570000 perm   1275 sec   (1232 perm/sec)   p_kst 2.249478e-01   p_cons 4.216561e-04   p_joint 5.350318e-03

Joint ci ratio: 4.251461e-02	ci left: 5.238099e-03	ci right 5.466252e-03	k: 8455	n:1580000
Cons ci ratio: 1.516372e-01	ci left: 3.907244e-04	ci right 4.554336e-04	k: 667	n:1580000
KS ci ratio: 5.788604e-03	ci left: 2.243029e-01	ci right 2.256057e-01	k: 355427	n:1580000
MTTP   1580000 perm   1288 sec   (1226 perm/sec)   p_kst 2.249538e-01   p_cons 4.221519e-04   p_joint 5.351266e-03

Joint ci ratio: 4.239453e-02	ci left: 5.235023e-03	ci right 5.462382e-03	k: 8503	n:1590000
Cons ci ratio: 1.514109e-01	ci left: 3.894771e-04	ci right 4.538748e-04	k: 669	n:1590000
KS ci ratio: 5.770763e-03	ci left: 2.242814e-01	ci right 2.255800e-01	k: 357639	n:1590000
MTTP   1590000 perm   1303 sec   (1221 perm/sec)   p_kst 2.249302e-01   p_cons 4.207547e-04   p_joint 5.347799e-03

Joint ci ratio: 4.247566e-02	ci left: 5.182513e-03	ci right 5.408033e-03	k: 8471	n:1600000
Cons ci ratio: 1.508490e-01	ci left: 3.900497e-04	ci right 4.542811e-04	k: 674	n:1600000
KS ci ratio: 5.752456e-03	ci left: 2.242982e-01	ci right 2.255928e-01	k: 359912	n:1600000
MTTP   1600000 perm   1317 sec   (1215 perm/sec)   p_kst 2.249450e-01   p_cons 4.212500e-04   p_joint 5.294375e-03

Joint ci ratio: 4.233842e-02	ci left: 5.184123e-03	ci right 5.408967e-03	k: 8526	n:1610000
Cons ci ratio: 1.504040e-01	ci left: 3.900179e-04	ci right 4.540375e-04	k: 678	n:1610000
KS ci ratio: 5.733721e-03	ci left: 2.243514e-01	ci right 2.256421e-01	k: 362244	n:1610000
MTTP   1610000 perm   1331 sec   (1210 perm/sec)   p_kst 2.249963e-01   p_cons 4.211180e-04   p_joint 5.295652e-03

Joint ci ratio: 4.222477e-02	ci left: 5.180217e-03	ci right 5.404273e-03	k: 8572	n:1620000
Cons ci ratio: 1.499630e-01	ci left: 3.899867e-04	ci right 4.537967e-04	k: 682	n:1620000
KS ci ratio: 5.716057e-03	ci left: 2.243498e-01	ci right 2.256364e-01	k: 364488	n:1620000
MTTP   1620000 perm   1345 sec   (1204 perm/sec)   p_kst 2.249926e-01   p_cons 4.209877e-04   p_joint 5.291358e-03

Joint ci ratio: 4.207524e-02	ci left: 5.185465e-03	ci right 5.408936e-03	k: 8633	n:1630000
Cons ci ratio: 1.497440e-01	ci left: 3.887752e-04	ci right 4.522857e-04	k: 684	n:1630000
KS ci ratio: 5.697924e-03	ci left: 2.243867e-01	ci right 2.256695e-01	k: 366795	n:1630000
MTTP   1630000 perm   1359 sec   (1199 perm/sec)   p_kst 2.250276e-01   p_cons 4.196319e-04   p_joint 5.296319e-03

Joint ci ratio: 4.196856e-02	ci left: 5.180394e-03	ci right 5.403066e-03	k: 8677	n:1640000
Cons ci ratio: 1.490924e-01	ci left: 3.899264e-04	ci right 4.533230e-04	k: 690	n:1640000
KS ci ratio: 5.679774e-03	ci left: 2.244348e-01	ci right 2.257137e-01	k: 369121	n:1640000
MTTP   1640000 perm   1374 sec   (1194 perm/sec)   p_kst 2.250738e-01   p_cons 4.207317e-04   p_joint 5.290854e-03

Joint ci ratio: 4.201306e-02	ci left: 5.138201e-03	ci right 5.359299e-03	k: 8659	n:1650000
Cons ci ratio: 1.490926e-01	ci left: 3.875631e-04	ci right 4.505756e-04	k: 690	n:1650000
KS ci ratio: 5.662524e-03	ci left: 2.244375e-01	ci right 2.257126e-01	k: 371373	n:1650000
MTTP   1650000 perm   1389 sec   (1188 perm/sec)   p_kst 2.250745e-01   p_cons 4.181818e-04   p_joint 5.247879e-03

Joint ci ratio: 4.191168e-02	ci left: 5.132283e-03	ci right 5.352581e-03	k: 8701	n:1660000
Cons ci ratio: 1.490927e-01	ci left: 3.852284e-04	ci right 4.478614e-04	k: 690	n:1660000
KS ci ratio: 5.645284e-03	ci left: 2.244492e-01	ci right 2.257204e-01	k: 373640	n:1660000
MTTP   1660000 perm   1403 sec   (1183 perm/sec)   p_kst 2.250843e-01   p_cons 4.156627e-04   p_joint 5.241566e-03

Joint ci ratio: 4.177024e-02	ci left: 5.136511e-03	ci right 5.356228e-03	k: 8760	n:1670000
Cons ci ratio: 1.483431e-01	ci left: 3.869573e-04	ci right 4.495270e-04	k: 697	n:1670000
KS ci ratio: 5.628432e-03	ci left: 2.244464e-01	ci right 2.257138e-01	k: 375883	n:1670000
MTTP   1670000 perm   1418 sec   (1178 perm/sec)   p_kst 2.250796e-01   p_cons 4.173653e-04   p_joint 5.245509e-03

Joint ci ratio: 4.163970e-02	ci left: 5.138333e-03	ci right 5.357425e-03	k: 8815	n:1680000
Cons ci ratio: 1.481312e-01	ci left: 3.858003e-04	ci right 4.480859e-04	k: 699	n:1680000
KS ci ratio: 5.611865e-03	ci left: 2.244353e-01	ci right 2.256989e-01	k: 378112	n:1680000
MTTP   1680000 perm   1433 sec   (1173 perm/sec)   p_kst 2.250667e-01   p_cons 4.160714e-04   p_joint 5.247024e-03

Joint ci ratio: 4.149864e-02	ci left: 5.143063e-03	ci right 5.361596e-03	k: 8875	n:1690000
Cons ci ratio: 1.477097e-01	ci left: 3.857967e-04	ci right 4.478889e-04	k: 703	n:1690000
KS ci ratio: 5.595225e-03	ci left: 2.244380e-01	ci right 2.256979e-01	k: 380364	n:1690000
MTTP   1690000 perm   1448 sec   (1167 perm/sec)   p_kst 2.250675e-01   p_cons 4.159763e-04   p_joint 5.251479e-03

Joint ci ratio: 4.197736e-02	ci left: 4.996383e-03	ci right 5.211191e-03	k: 8675	n:1700000
Cons ci ratio: 1.476051e-01	ci left: 3.840938e-04	ci right 4.458642e-04	k: 704	n:1700000
KS ci ratio: 5.579155e-03	ci left: 2.244142e-01	ci right 2.256703e-01	k: 382571	n:1700000
MTTP   1700000 perm   1463 sec   (1162 perm/sec)   p_kst 2.250418e-01   p_cons 4.141176e-04   p_joint 5.102941e-03

Joint ci ratio: 4.186176e-02	ci left: 4.994940e-03	ci right 5.209081e-03	k: 8723	n:1710000
Cons ci ratio: 1.471881e-01	ci left: 3.841005e-04	ci right 4.456822e-04	k: 708	n:1710000
KS ci ratio: 5.562887e-03	ci left: 2.244117e-01	ci right 2.256641e-01	k: 384814	n:1710000
MTTP   1710000 perm   1478 sec   (1157 perm/sec)   p_kst 2.250374e-01   p_cons 4.140351e-04   p_joint 5.101170e-03

Joint ci ratio: 4.117080e-02	ci left: 5.135063e-03	ci right 5.351492e-03	k: 9017	n:1720000
Cons ci ratio: 1.468778e-01	ci left: 3.835474e-04	ci right 4.448994e-04	k: 711	n:1720000
KS ci ratio: 5.546594e-03	ci left: 2.244197e-01	ci right 2.256685e-01	k: 387075	n:1720000
MTTP   1720000 perm   1493 sec   (1152 perm/sec)   p_kst 2.250436e-01   p_cons 4.133721e-04   p_joint 5.242442e-03

Joint ci ratio: 4.103443e-02	ci left: 5.139706e-03	ci right 5.355596e-03	k: 9077	n:1730000
Cons ci ratio: 1.462627e-01	ci left: 3.846714e-04	ci right 4.459230e-04	k: 717	n:1730000
KS ci ratio: 5.530489e-03	ci left: 2.244247e-01	ci right 2.256699e-01	k: 389331	n:1730000
MTTP   1730000 perm   1508 sec   (1147 perm/sec)   p_kst 2.250468e-01   p_cons 4.144509e-04   p_joint 5.246821e-03

Joint ci ratio: 4.119272e-02	ci left: 5.070917e-03	ci right 5.284758e-03	k: 9008	n:1740000
Cons ci ratio: 1.456553e-01	ci left: 3.857830e-04	ci right 4.469343e-04	k: 723	n:1740000
KS ci ratio: 5.514069e-03	ci left: 2.244584e-01	ci right 2.257000e-01	k: 391637	n:1740000
MTTP   1740000 perm   1523 sec   (1142 perm/sec)   p_kst 2.250787e-01   p_cons 4.155172e-04   p_joint 5.177011e-03

Joint ci ratio: 4.108346e-02	ci left: 5.069086e-03	ci right 5.282270e-03	k: 9056	n:1750000
Cons ci ratio: 1.454546e-01	ci left: 3.846798e-04	ci right 4.455649e-04	k: 725	n:1750000
KS ci ratio: 5.498921e-03	ci left: 2.244203e-01	ci right 2.256583e-01	k: 393818	n:1750000
MTTP   1750000 perm   1538 sec   (1137 perm/sec)   p_kst 2.250389e-01   p_cons 4.142857e-04   p_joint 5.174857e-03

Joint ci ratio: 4.155714e-02	ci left: 4.925566e-03	ci right 5.135159e-03	k: 8852	n:1760000
Cons ci ratio: 1.450556e-01	ci left: 3.846842e-04	ci right 4.453885e-04	k: 729	n:1760000
KS ci ratio: 5.483343e-03	ci left: 2.244179e-01	ci right 2.256524e-01	k: 396061	n:1760000
MTTP   1760000 perm   1554 sec   (1133 perm/sec)   p_kst 2.250347e-01   p_cons 4.142045e-04   p_joint 5.029545e-03

Joint ci ratio: 4.141925e-02	ci left: 4.930725e-03	ci right 5.139826e-03	k: 8911	n:1770000
Cons ci ratio: 1.447585e-01	ci left: 3.841443e-04	ci right 4.446285e-04	k: 732	n:1770000
KS ci ratio: 5.467772e-03	ci left: 2.244234e-01	ci right 2.256544e-01	k: 398318	n:1770000
MTTP   1770000 perm   1569 sec   (1128 perm/sec)   p_kst 2.250384e-01   p_cons 4.135593e-04   p_joint 5.034463e-03

Joint ci ratio: 4.129661e-02	ci left: 4.932492e-03	ci right 5.141033e-03	k: 8964	n:1780000
Cons ci ratio: 1.445615e-01	ci left: 3.830691e-04	ci right 4.432949e-04	k: 734	n:1780000
KS ci ratio: 5.452905e-03	ci left: 2.243923e-01	ci right 2.256198e-01	k: 400510	n:1780000
MTTP   1780000 perm   1584 sec   (1123 perm/sec)   p_kst 2.250056e-01   p_cons 4.123596e-04   p_joint 5.035955e-03

Joint ci ratio: 4.874443e-02	ci left: 3.512234e-03	ci right 3.688260e-03	k: 6443	n:1790000
Cons ci ratio: 1.442674e-01	ci left: 3.825445e-04	ci right 4.425549e-04	k: 737	n:1790000
KS ci ratio: 5.465430e-03	ci left: 2.226237e-01	ci right 2.238443e-01	k: 399588	n:1790000
MTTP   1790000 perm   1600 sec   (1119 perm/sec)   p_kst 2.232335e-01   p_cons 4.117318e-04   p_joint 3.599441e-03

Joint ci ratio: 4.856749e-02	ci left: 3.518516e-03	ci right 3.694199e-03	k: 6490	n:1800000
Cons ci ratio: 1.440724e-01	ci left: 3.814902e-04	ci right 4.412474e-04	k: 739	n:1800000
KS ci ratio: 5.450396e-03	ci left: 2.226146e-01	ci right 2.238318e-01	k: 401801	n:1800000
MTTP   1800000 perm   1615 sec   (1114 perm/sec)   p_kst 2.232228e-01   p_cons 4.105556e-04   p_joint 3.605556e-03

Joint ci ratio: 4.844082e-02	ci left: 3.517633e-03	ci right 3.692801e-03	k: 6524	n:1810000
Cons ci ratio: 1.436846e-01	ci left: 3.815129e-04	ci right 4.410990e-04	k: 743	n:1810000
KS ci ratio: 5.435944e-03	ci left: 2.225764e-01	ci right 2.237902e-01	k: 403961	n:1810000
MTTP   1810000 perm   1631 sec   (1110 perm/sec)   p_kst 2.231829e-01   p_cons 4.104972e-04   p_joint 3.604420e-03

Joint ci ratio: 4.828559e-02	ci left: 3.521103e-03	ci right 3.695867e-03	k: 6566	n:1820000
Cons ci ratio: 1.431086e-01	ci left: 3.825952e-04	ci right 4.420903e-04	k: 749	n:1820000
KS ci ratio: 5.421169e-03	ci left: 2.225667e-01	ci right 2.237771e-01	k: 406172	n:1820000
MTTP   1820000 perm   1647 sec   (1105 perm/sec)   p_kst 2.231714e-01   p_cons 4.115385e-04   p_joint 3.607692e-03

Joint ci ratio: 4.746959e-02	ci left: 3.624426e-03	ci right 3.801194e-03	k: 6793	n:1830000
Cons ci ratio: 1.424453e-01	ci left: 3.841930e-04	ci right 4.436361e-04	k: 756	n:1830000
KS ci ratio: 5.405849e-03	ci left: 2.225996e-01	ci right 2.238067e-01	k: 408461	n:1830000
MTTP   1830000 perm   1662 sec   (1101 perm/sec)   p_kst 2.232027e-01   p_cons 4.131148e-04   p_joint 3.712022e-03

Joint ci ratio: 4.732001e-02	ci left: 3.627821e-03	ci right 3.804182e-03	k: 6836	n:1840000
Cons ci ratio: 1.413292e-01	ci left: 3.883953e-04	ci right 4.479781e-04	k: 768	n:1840000
KS ci ratio: 5.391291e-03	ci left: 2.225915e-01	ci right 2.237953e-01	k: 410675	n:1840000
MTTP   1840000 perm   1679 sec   (1096 perm/sec)   p_kst 2.231929e-01   p_cons 4.173913e-04   p_joint 3.715217e-03

Joint ci ratio: 4.772503e-02	ci left: 3.546784e-03	ci right 3.720722e-03	k: 6721	n:1850000
Cons ci ratio: 1.407810e-01	ci left: 3.894247e-04	ci right 4.489142e-04	k: 774	n:1850000
KS ci ratio: 5.376038e-03	ci left: 2.226358e-01	ci right 2.238364e-01	k: 412986	n:1850000
MTTP   1850000 perm   1695 sec   (1091 perm/sec)   p_kst 2.232357e-01   p_cons 4.183784e-04   p_joint 3.632973e-03

Joint ci ratio: 4.758009e-02	ci left: 3.549495e-03	ci right 3.723023e-03	k: 6762	n:1860000
Cons ci ratio: 1.400598e-01	ci left: 3.914810e-04	ci right 4.509527e-04	k: 782	n:1860000
KS ci ratio: 5.361445e-03	ci left: 2.226453e-01	ci right 2.238427e-01	k: 415233	n:1860000
MTTP   1860000 perm   1711 sec   (1087 perm/sec)   p_kst 2.232435e-01   p_cons 4.204301e-04   p_joint 3.635484e-03

Joint ci ratio: 4.741898e-02	ci left: 3.554821e-03	ci right 3.728005e-03	k: 6808	n:1870000
Cons ci ratio: 1.391737e-01	ci left: 3.945483e-04	ci right 4.540754e-04	k: 792	n:1870000
KS ci ratio: 5.347613e-03	ci left: 2.226130e-01	ci right 2.238071e-01	k: 417402	n:1870000
MTTP   1870000 perm   1727 sec   (1083 perm/sec)   p_kst 2.232096e-01   p_cons 4.235294e-04   p_joint 3.640642e-03

Joint ci ratio: 4.731841e-02	ci left: 3.551155e-03	ci right 3.723784e-03	k: 6837	n:1880000
Cons ci ratio: 1.390862e-01	ci left: 3.929631e-04	ci right 4.522106e-04	k: 793	n:1880000
KS ci ratio: 5.334019e-03	ci left: 2.225725e-01	ci right 2.237634e-01	k: 419555	n:1880000
MTTP   1880000 perm   1744 sec   (1078 perm/sec)   p_kst 2.231676e-01   p_cons 4.218085e-04   p_joint 3.636702e-03

Joint ci ratio: 4.721158e-02	ci left: 3.548574e-03	ci right 3.720677e-03	k: 6868	n:1890000
Cons ci ratio: 1.387372e-01	ci left: 3.929267e-04	ci right 4.520079e-04	k: 797	n:1890000
KS ci ratio: 5.319806e-03	ci left: 2.225796e-01	ci right 2.237673e-01	k: 421797	n:1890000
MTTP   1890000 perm   1761 sec   (1074 perm/sec)   p_kst 2.231730e-01   p_cons 4.216931e-04   p_joint 3.633862e-03

Joint ci ratio: 4.719135e-02	ci left: 3.533018e-03	ci right 3.704290e-03	k: 6874	n:1900000
Cons ci ratio: 1.382185e-01	ci left: 3.939072e-04	ci right 4.528961e-04	k: 803	n:1900000
KS ci ratio: 5.305689e-03	ci left: 2.225876e-01	ci right 2.237722e-01	k: 424041	n:1900000
MTTP   1900000 perm   1777 sec   (1069 perm/sec)   p_kst 2.231795e-01   p_cons 4.226316e-04   p_joint 3.617895e-03

Joint ci ratio: 4.602074e-02	ci left: 3.697191e-03	ci right 3.871859e-03	k: 7227	n:1910000
Cons ci ratio: 1.377055e-01	ci left: 3.948778e-04	ci right 4.537746e-04	k: 809	n:1910000
KS ci ratio: 5.292483e-03	ci left: 2.225432e-01	ci right 2.237246e-01	k: 426185	n:1910000
MTTP   1910000 perm   1794 sec   (1065 perm/sec)   p_kst 2.231335e-01   p_cons 4.235602e-04   p_joint 3.783770e-03

Joint ci ratio: 4.589707e-02	ci left: 3.698013e-03	ci right 3.872239e-03	k: 7266	n:1920000
Cons ci ratio: 1.375359e-01	ci left: 3.938269e-04	ci right 4.524887e-04	k: 811	n:1920000
KS ci ratio: 5.278884e-03	ci left: 2.225316e-01	ci right 2.237099e-01	k: 428391	n:1920000
MTTP   1920000 perm   1811 sec   (1060 perm/sec)   p_kst 2.231203e-01   p_cons 4.223958e-04   p_joint 3.784375e-03

Joint ci ratio: 4.579012e-02	ci left: 3.696267e-03	ci right 3.869994e-03	k: 7300	n:1930000
Cons ci ratio: 1.370305e-01	ci left: 3.947884e-04	ci right 4.533597e-04	k: 817	n:1930000
KS ci ratio: 5.264523e-03	ci left: 2.225770e-01	ci right 2.237523e-01	k: 430707	n:1930000
MTTP   1930000 perm   1828 sec   (1056 perm/sec)   p_kst 2.231642e-01   p_cons 4.233161e-04   p_joint 3.782383e-03

Joint ci ratio: 4.567142e-02	ci left: 3.696578e-03	ci right 3.869857e-03	k: 7338	n:1940000
Cons ci ratio: 1.368634e-01	ci left: 3.937490e-04	ci right 4.520891e-04	k: 819	n:1940000
KS ci ratio: 5.251465e-03	ci left: 2.225437e-01	ci right 2.237159e-01	k: 432871	n:1940000
MTTP   1940000 perm   1844 sec   (1052 perm/sec)   p_kst 2.231294e-01   p_cons 4.221649e-04   p_joint 3.782474e-03

Joint ci ratio: 4.551031e-02	ci left: 3.703984e-03	ci right 3.876982e-03	k: 7390	n:1950000
Cons ci ratio: 1.365308e-01	ci left: 3.937109e-04	ci right 4.518920e-04	k: 823	n:1950000
KS ci ratio: 5.238031e-03	ci left: 2.225419e-01	ci right 2.237112e-01	k: 435096	n:1950000
MTTP   1950000 perm   1861 sec   (1048 perm/sec)   p_kst 2.231262e-01   p_cons 4.220513e-04   p_joint 3.789744e-03

Joint ci ratio: 4.543676e-02	ci left: 3.697192e-03	ci right 3.869586e-03	k: 7414	n:1960000
Cons ci ratio: 1.363655e-01	ci left: 3.926878e-04	ci right 4.506417e-04	k: 825	n:1960000
KS ci ratio: 5.225238e-03	ci left: 2.225046e-01	ci right 2.236707e-01	k: 437251	n:1960000
MTTP   1960000 perm   1878 sec   (1044 perm/sec)   p_kst 2.230872e-01   p_cons 4.209184e-04   p_joint 3.782653e-03

Joint ci ratio: 4.534215e-02	ci left: 3.693982e-03	ci right 3.865858e-03	k: 7445	n:1970000
Cons ci ratio: 1.358728e-01	ci left: 3.936364e-04	ci right 4.515035e-04	k: 831	n:1970000
KS ci ratio: 5.211928e-03	ci left: 2.225081e-01	ci right 2.236714e-01	k: 439486	n:1970000
MTTP   1970000 perm   1895 sec   (1040 perm/sec)   p_kst 2.230893e-01   p_cons 4.218274e-04   p_joint 3.779188e-03

Joint ci ratio: 4.624266e-02	ci left: 3.532528e-03	ci right 3.700243e-03	k: 7159	n:1980000
Cons ci ratio: 1.354663e-01	ci left: 3.940879e-04	ci right 4.518341e-04	k: 836	n:1980000
KS ci ratio: 5.198151e-03	ci left: 2.225495e-01	ci right 2.237099e-01	k: 441796	n:1980000
MTTP   1980000 perm   1911 sec   (1036 perm/sec)   p_kst 2.231293e-01   p_cons 4.222222e-04   p_joint 3.615657e-03

Joint ci ratio: 4.610434e-02	ci left: 3.536135e-03	ci right 3.703506e-03	k: 7202	n:1990000
Cons ci ratio: 1.350635e-01	ci left: 3.945351e-04	ci right 4.521611e-04	k: 841	n:1990000
KS ci ratio: 5.185625e-03	ci left: 2.225142e-01	ci right 2.236715e-01	k: 443954	n:1990000
MTTP   1990000 perm   1928 sec   (1032 perm/sec)   p_kst 2.230925e-01   p_cons 4.226131e-04   p_joint 3.619095e-03

Joint ci ratio: 4.598956e-02	ci left: 3.536247e-03	ci right 3.703195e-03	k: 7238	n:2000000
Cons ci ratio: 1.347438e-01	ci left: 3.944949e-04	ci right 4.519678e-04	k: 845	n:2000000
KS ci ratio: 5.172271e-03	ci left: 2.225406e-01	ci right 2.236952e-01	k: 446235	n:2000000
MTTP   2000000 perm   1945 sec   (1028 perm/sec)   p_kst 2.231175e-01   p_cons 4.225000e-04   p_joint 3.619000e-03

Joint ci ratio: 4.588830e-02	ci left: 3.534391e-03	ci right 3.700875e-03	k: 7270	n:2010000
Cons ci ratio: 1.345849e-01	ci left: 3.934938e-04	ci right 4.507477e-04	k: 847	n:2010000
KS ci ratio: 5.158982e-03	ci left: 2.225693e-01	ci right 2.237210e-01	k: 448521	n:2010000
MTTP   2010000 perm   1962 sec   (1024 perm/sec)   p_kst 2.231448e-01   p_cons 4.213930e-04   p_joint 3.616915e-03

Joint ci ratio: 4.488080e-02	ci left: 3.677924e-03	ci right 3.847266e-03	k: 7599	n:2020000
Cons ci ratio: 1.343475e-01	ci left: 3.929810e-04	ci right 4.500514e-04	k: 850	n:2020000
KS ci ratio: 5.146619e-03	ci left: 2.225423e-01	ci right 2.236911e-01	k: 450695	n:2020000
MTTP   2020000 perm   1980 sec   (1020 perm/sec)   p_kst 2.231163e-01   p_cons 4.207921e-04   p_joint 3.761881e-03

Joint ci ratio: 4.476902e-02	ci left: 3.678315e-03	ci right 3.847243e-03	k: 7637	n:2030000
Cons ci ratio: 1.338763e-01	ci left: 3.939016e-04	ci right 4.508891e-04	k: 856	n:2030000
KS ci ratio: 5.133833e-03	ci left: 2.225501e-01	ci right 2.236960e-01	k: 452939	n:2030000
MTTP   2030000 perm   1997 sec   (1016 perm/sec)   p_kst 2.231227e-01   p_cons 4.216749e-04   p_joint 3.762069e-03

Joint ci ratio: 4.473124e-02	ci left: 3.666585e-03	ci right 3.834829e-03	k: 7650	n:2040000
Cons ci ratio: 1.336427e-01	ci left: 3.933921e-04	ci right 4.501987e-04	k: 859	n:2040000
KS ci ratio: 5.121287e-03	ci left: 2.225479e-01	ci right 2.236911e-01	k: 455163	n:2040000
MTTP   2040000 perm   2015 sec   (1012 perm/sec)   p_kst 2.231191e-01   p_cons 4.210784e-04   p_joint 3.750000e-03

Joint ci ratio: 4.461183e-02	ci left: 3.668476e-03	ci right 3.836345e-03	k: 7691	n:2050000
Cons ci ratio: 1.334876e-01	ci left: 3.924161e-04	ci right 4.490108e-04	k: 861	n:2050000
KS ci ratio: 5.108416e-03	ci left: 2.225741e-01	ci right 2.237145e-01	k: 457445	n:2050000
MTTP   2050000 perm   2033 sec   (1009 perm/sec)   p_kst 2.231439e-01   p_cons 4.200000e-04   p_joint 3.751707e-03

Joint ci ratio: 4.448182e-02	ci left: 3.672269e-03	ci right 3.839810e-03	k: 7736	n:2060000
Cons ci ratio: 1.332560e-01	ci left: 3.919189e-04	ci right 4.483360e-04	k: 864	n:2060000
KS ci ratio: 5.095791e-03	ci left: 2.225898e-01	ci right 2.237275e-01	k: 459706	n:2060000
MTTP   2060000 perm   2051 sec   (1005 perm/sec)   p_kst 2.231583e-01   p_cons 4.194175e-04   p_joint 3.755340e-03

Joint ci ratio: 4.437871e-02	ci left: 3.671727e-03	ci right 3.838845e-03	k: 7772	n:2070000
Cons ci ratio: 1.328725e-01	ci left: 3.923606e-04	ci right 4.486659e-04	k: 869	n:2070000
KS ci ratio: 5.083415e-03	ci left: 2.225948e-01	ci right 2.237297e-01	k: 461945	n:2070000
MTTP   2070000 perm   2069 sec   (1001 perm/sec)   p_kst 2.231618e-01   p_cons 4.198068e-04   p_joint 3.754589e-03

Joint ci ratio: 4.406161e-02	ci left: 3.707327e-03	ci right 3.874829e-03	k: 7884	n:2080000
Cons ci ratio: 1.325681e-01	ci left: 3.923335e-04	ci right 4.484958e-04	k: 873	n:2080000
KS ci ratio: 5.071410e-03	ci left: 2.225805e-01	ci right 2.237126e-01	k: 464144	n:2080000
MTTP   2080000 perm   2087 sec   (997 perm/sec)   p_kst 2.231462e-01   p_cons 4.197115e-04   p_joint 3.790385e-03

Joint ci ratio: 4.395582e-02	ci left: 3.707570e-03	ci right 3.874671e-03	k: 7922	n:2090000
Cons ci ratio: 1.322658e-01	ci left: 3.923068e-04	ci right 4.483271e-04	k: 877	n:2090000
KS ci ratio: 5.059482e-03	ci left: 2.225668e-01	ci right 2.236962e-01	k: 466344	n:2090000
MTTP   2090000 perm   2105 sec   (993 perm/sec)   p_kst 2.231311e-01   p_cons 4.196172e-04   p_joint 3.790431e-03

Joint ci ratio: 4.414397e-02	ci left: 3.658360e-03	ci right 3.823966e-03	k: 7855	n:2100000
Cons ci ratio: 1.319655e-01	ci left: 3.922804e-04	ci right 4.481599e-04	k: 881	n:2100000
KS ci ratio: 5.047403e-03	ci left: 2.225694e-01	ci right 2.236961e-01	k: 468578	n:2100000
MTTP   2100000 perm   2123 sec   (989 perm/sec)   p_kst 2.231324e-01   p_cons 4.195238e-04   p_joint 3.740476e-03

Joint ci ratio: 4.406000e-02	ci left: 3.655082e-03	ci right 3.820218e-03	k: 7885	n:2110000
Cons ci ratio: 1.317417e-01	ci left: 3.917962e-04	ci right 4.475046e-04	k: 884	n:2110000
KS ci ratio: 5.035258e-03	ci left: 2.225824e-01	ci right 2.237065e-01	k: 470834	n:2110000
MTTP   2110000 perm   2141 sec   (986 perm/sec)   p_kst 2.231441e-01   p_cons 4.189573e-04   p_joint 3.736967e-03

Joint ci ratio: 4.355059e-02	ci left: 3.724153e-03	ci right 3.890415e-03	k: 8070	n:2120000
Cons ci ratio: 1.315190e-01	ci left: 3.913166e-04	ci right 4.468554e-04	k: 887	n:2120000
KS ci ratio: 5.023864e-03	ci left: 2.225496e-01	ci right 2.236709e-01	k: 472993	n:2120000
MTTP   2120000 perm   2159 sec   (982 perm/sec)   p_kst 2.231099e-01   p_cons 4.183962e-04   p_joint 3.806604e-03

Joint ci ratio: 4.346996e-02	ci left: 3.720600e-03	ci right 3.886388e-03	k: 8100	n:2130000
Cons ci ratio: 1.312974e-01	ci left: 3.908416e-04	ci right 4.462122e-04	k: 890	n:2130000
KS ci ratio: 5.012295e-03	ci left: 2.225345e-01	ci right 2.236531e-01	k: 475189	n:2130000
MTTP   2130000 perm   2177 sec   (978 perm/sec)   p_kst 2.230934e-01   p_cons 4.178404e-04   p_joint 3.802817e-03

Joint ci ratio: 4.357847e-02	ci left: 3.684724e-03	ci right 3.849334e-03	k: 8060	n:2140000
Cons ci ratio: 1.309306e-01	ci left: 3.912750e-04	ci right 4.465401e-04	k: 895	n:2140000
KS ci ratio: 5.000624e-03	ci left: 2.225321e-01	ci right 2.236481e-01	k: 477412	n:2140000
MTTP   2140000 perm   2195 sec   (975 perm/sec)   p_kst 2.230897e-01   p_cons 4.182243e-04   p_joint 3.766355e-03

Joint ci ratio: 4.348420e-02	ci left: 3.683688e-03	ci right 3.847886e-03	k: 8095	n:2150000
Cons ci ratio: 1.307120e-01	ci left: 3.908048e-04	ci right 4.459042e-04	k: 898	n:2150000
KS ci ratio: 4.988907e-03	ci left: 2.225385e-01	ci right 2.236520e-01	k: 479654	n:2150000
MTTP   2150000 perm   2214 sec   (971 perm/sec)   p_kst 2.230949e-01   p_cons 4.176744e-04   p_joint 3.765116e-03

Joint ci ratio: 4.338250e-02	ci left: 3.684035e-03	ci right 3.847855e-03	k: 8133	n:2160000
Cons ci ratio: 1.305669e-01	ci left: 3.898912e-04	ci right 4.447960e-04	k: 900	n:2160000
KS ci ratio: 4.976973e-03	ci left: 2.225657e-01	ci right 2.236767e-01	k: 481941	n:2160000
MTTP   2160000 perm   2232 sec   (968 perm/sec)   p_kst 2.231208e-01   p_cons 4.166667e-04   p_joint 3.765278e-03

Joint ci ratio: 4.330812e-02	ci left: 3.679821e-03	ci right 3.843167e-03	k: 8161	n:2170000
Cons ci ratio: 1.304946e-01	ci left: 3.885402e-04	ci right 4.432222e-04	k: 901	n:2170000
KS ci ratio: 4.965830e-03	ci left: 2.225435e-01	ci right 2.236518e-01	k: 484121	n:2170000
MTTP   2170000 perm   2251 sec   (964 perm/sec)   p_kst 2.230972e-01   p_cons 4.152074e-04   p_joint 3.760829e-03

Joint ci ratio: 4.291446e-02	ci left: 3.731009e-03	ci right 3.895084e-03	k: 8311	n:2180000
Cons ci ratio: 1.301344e-01	ci left: 3.889767e-04	ci right 4.435573e-04	k: 906	n:2180000
KS ci ratio: 4.954053e-03	ci left: 2.225709e-01	ci right 2.236767e-01	k: 486409	n:2180000
MTTP   2180000 perm   2269 sec   (961 perm/sec)   p_kst 2.231234e-01   p_cons 4.155963e-04   p_joint 3.812385e-03

Joint ci ratio: 4.282185e-02	ci left: 3.730235e-03	ci right 3.893913e-03	k: 8347	n:2190000
Cons ci ratio: 1.298483e-01	ci left: 3.889677e-04	ci right 4.434178e-04	k: 910	n:2190000
KS ci ratio: 4.942464e-03	ci left: 2.225907e-01	ci right 2.236940e-01	k: 488681	n:2190000
MTTP   2190000 perm   2287 sec   (957 perm/sec)   p_kst 2.231420e-01   p_cons 4.155251e-04   p_joint 3.811416e-03

Joint ci ratio: 4.274007e-02	ci left: 3.727669e-03	ci right 3.890914e-03	k: 8379	n:2200000
Cons ci ratio: 1.296351e-01	ci left: 3.885190e-04	ci right 4.428101e-04	k: 913	n:2200000
KS ci ratio: 4.931073e-03	ci left: 2.226022e-01	ci right 2.237030e-01	k: 490935	n:2200000
MTTP   2200000 perm   2306 sec   (954 perm/sec)   p_kst 2.231523e-01   p_cons 4.150000e-04   p_joint 3.808636e-03

Joint ci ratio: 4.264604e-02	ci left: 3.727365e-03	ci right 3.890229e-03	k: 8416	n:2210000
Cons ci ratio: 1.292820e-01	ci left: 3.889502e-04	ci right 4.431421e-04	k: 918	n:2210000
KS ci ratio: 4.920151e-03	ci left: 2.225861e-01	ci right 2.236843e-01	k: 493128	n:2210000
MTTP   2210000 perm   2324 sec   (951 perm/sec)   p_kst 2.231348e-01   p_cons 4.153846e-04   p_joint 3.808145e-03

Joint ci ratio: 4.135903e-02	ci left: 3.946816e-03	ci right 4.113941e-03	k: 8946	n:2220000
Cons ci ratio: 1.290715e-01	ci left: 3.885058e-04	ci right 4.425410e-04	k: 921	n:2220000
KS ci ratio: 4.909130e-03	ci left: 2.225822e-01	ci right 2.236780e-01	k: 495348	n:2220000
MTTP   2220000 perm   2343 sec   (948 perm/sec)   p_kst 2.231297e-01   p_cons 4.148649e-04   p_joint 4.029730e-03

Joint ci ratio: 4.215196e-02	ci left: 3.781786e-03	ci right 3.945067e-03	k: 8614	n:2230000
Cons ci ratio: 1.290716e-01	ci left: 3.867636e-04	ci right 4.405566e-04	k: 921	n:2230000
KS ci ratio: 4.897916e-03	ci left: 2.225972e-01	ci right 2.236905e-01	k: 497610	n:2230000
MTTP   2230000 perm   2361 sec   (944 perm/sec)   p_kst 2.231435e-01   p_cons 4.130045e-04   p_joint 3.862780e-03

Joint ci ratio: 4.206419e-02	ci left: 3.780805e-03	ci right 3.943696e-03	k: 8650	n:2240000
Cons ci ratio: 1.288622e-01	ci left: 3.863331e-04	ci right 4.399723e-04	k: 924	n:2240000
KS ci ratio: 4.886734e-03	ci left: 2.226151e-01	ci right 2.237061e-01	k: 499879	n:2240000
MTTP   2240000 perm   2380 sec   (941 perm/sec)   p_kst 2.231603e-01   p_cons 4.125000e-04   p_joint 3.861607e-03

Joint ci ratio: 4.198667e-02	ci left: 3.778074e-03	ci right 3.940540e-03	k: 8682	n:2250000
Cons ci ratio: 1.286537e-01	ci left: 3.859064e-04	ci right 4.393931e-04	k: 927	n:2250000
KS ci ratio: 4.876523e-03	ci left: 2.225695e-01	ci right 2.236579e-01	k: 502005	n:2250000
MTTP   2250000 perm   2399 sec   (938 perm/sec)   p_kst 2.231133e-01   p_cons 4.120000e-04   p_joint 3.858667e-03

Joint ci ratio: 4.188305e-02	ci left: 3.780184e-03	ci right 3.942330e-03	k: 8725	n:2260000
Cons ci ratio: 1.285846e-01	ci left: 3.846271e-04	ci right 4.379056e-04	k: 928	n:2260000
KS ci ratio: 4.866083e-03	ci left: 2.225450e-01	ci right 2.236310e-01	k: 504178	n:2260000
MTTP   2260000 perm   2418 sec   (935 perm/sec)   p_kst 2.230876e-01   p_cons 4.106195e-04   p_joint 3.860619e-03

Joint ci ratio: 4.180174e-02	ci left: 3.778352e-03	ci right 3.940098e-03	k: 8759	n:2270000
Cons ci ratio: 1.279661e-01	ci left: 3.867703e-04	ci right 4.400684e-04	k: 937	n:2270000
KS ci ratio: 4.854686e-03	ci left: 2.225938e-01	ci right 2.236774e-01	k: 506517	n:2270000
MTTP   2270000 perm   2438 sec   (931 perm/sec)   p_kst 2.231352e-01   p_cons 4.127753e-04   p_joint 3.858590e-03

Joint ci ratio: 4.169710e-02	ci left: 3.780878e-03	ci right 3.942316e-03	k: 8803	n:2280000
Cons ci ratio: 1.277619e-01	ci left: 3.863476e-04	ci right 4.394961e-04	k: 940	n:2280000
KS ci ratio: 4.843467e-03	ci left: 2.226351e-01	ci right 2.237165e-01	k: 508840	n:2280000
MTTP   2280000 perm   2457 sec   (928 perm/sec)   p_kst 2.231754e-01   p_cons 4.122807e-04   p_joint 3.860965e-03

Joint ci ratio: 4.162159e-02	ci left: 3.778195e-03	ci right 3.939220e-03	k: 8835	n:2290000
Cons ci ratio: 1.275588e-01	ci left: 3.859287e-04	ci right 4.389288e-04	k: 943	n:2290000
KS ci ratio: 4.832465e-03	ci left: 2.226661e-01	ci right 2.237451e-01	k: 511140	n:2290000
MTTP   2290000 perm   2476 sec   (925 perm/sec)   p_kst 2.232052e-01   p_cons 4.117904e-04   p_joint 3.858079e-03

Joint ci ratio: 4.182916e-02	ci left: 3.724335e-03	ci right 3.883875e-03	k: 8748	n:2300000
Cons ci ratio: 1.272894e-01	ci left: 3.859345e-04	ci right 4.388149e-04	k: 947	n:2300000
KS ci ratio: 4.821398e-03	ci left: 2.227067e-01	ci right 2.237835e-01	k: 513463	n:2300000
MTTP   2300000 perm   2496 sec   (922 perm/sec)   p_kst 2.232448e-01   p_cons 4.117391e-04   p_joint 3.803478e-03

Joint ci ratio: 4.173624e-02	ci left: 3.724919e-03	ci right 3.884121e-03	k: 8787	n:2310000
Cons ci ratio: 1.271554e-01	ci left: 3.851020e-04	ci right 4.378087e-04	k: 949	n:2310000
KS ci ratio: 4.810761e-03	ci left: 2.227216e-01	ci right 2.237960e-01	k: 515727	n:2310000
MTTP   2310000 perm   2515 sec   (918 perm/sec)   p_kst 2.232584e-01   p_cons 4.108225e-04   p_joint 3.803896e-03

Joint ci ratio: 4.186108e-02	ci left: 3.686682e-03	ci right 3.844733e-03	k: 8735	n:2320000
Cons ci ratio: 1.268886e-01	ci left: 3.851114e-04	ci right 4.377004e-04	k: 953	n:2320000
KS ci ratio: 4.800589e-03	ci left: 2.227078e-01	ci right 2.237799e-01	k: 517925	n:2320000
MTTP   2320000 perm   2534 sec   (915 perm/sec)   p_kst 2.232435e-01   p_cons 4.107759e-04   p_joint 3.765086e-03

Joint ci ratio: 4.178228e-02	ci left: 3.684874e-03	ci right 3.842543e-03	k: 8768	n:2330000
Cons ci ratio: 1.266896e-01	ci left: 3.847053e-04	ci right 4.371503e-04	k: 956	n:2330000
KS ci ratio: 4.790527e-03	ci left: 2.226908e-01	ci right 2.237606e-01	k: 520115	n:2330000
MTTP   2330000 perm   2553 sec   (912 perm/sec)   p_kst 2.232253e-01   p_cons 4.103004e-04   p_joint 3.763090e-03

Joint ci ratio: 4.117205e-02	ci left: 3.779513e-03	ci right 3.938813e-03	k: 9029	n:2340000
Cons ci ratio: 1.264256e-01	ci left: 3.847165e-04	ci right 4.370456e-04	k: 960	n:2340000
KS ci ratio: 4.780311e-03	ci left: 2.226897e-01	ci right 2.237572e-01	k: 522342	n:2340000
MTTP   2340000 perm   2573 sec   (910 perm/sec)   p_kst 2.232231e-01   p_cons 4.102564e-04   p_joint 3.858547e-03

Joint ci ratio: 4.107206e-02	ci left: 3.781961e-03	ci right 3.940968e-03	k: 9073	n:2350000
Cons ci ratio: 1.262943e-01	ci left: 3.839036e-04	ci right 4.360638e-04	k: 962	n:2350000
KS ci ratio: 4.770031e-03	ci left: 2.226979e-01	ci right 2.237632e-01	k: 524591	n:2350000
MTTP   2350000 perm   2592 sec   (907 perm/sec)   p_kst 2.232302e-01   p_cons 4.093617e-04   p_joint 3.860851e-03

Joint ci ratio: 4.100667e-02	ci left: 3.778097e-03	ci right 3.936683e-03	k: 9102	n:2360000
Cons ci ratio: 1.262944e-01	ci left: 3.822769e-04	ci right 4.342161e-04	k: 962	n:2360000
KS ci ratio: 4.759678e-03	ci left: 2.227163e-01	ci right 2.237793e-01	k: 526864	n:2360000
MTTP   2360000 perm   2612 sec   (903 perm/sec)   p_kst 2.232475e-01   p_cons 4.076271e-04   p_joint 3.856780e-03

Joint ci ratio: 4.131106e-02	ci left: 3.706613e-03	ci right 3.863380e-03	k: 8969	n:2370000
Cons ci ratio: 1.261635e-01	ci left: 3.814811e-04	ci right 4.332545e-04	k: 964	n:2370000
KS ci ratio: 4.749681e-03	ci left: 2.227134e-01	ci right 2.237742e-01	k: 529087	n:2370000
MTTP   2370000 perm   2632 sec   (900 perm/sec)   p_kst 2.232435e-01   p_cons 4.067511e-04   p_joint 3.784388e-03

Joint ci ratio: 4.123072e-02	ci left: 3.705593e-03	ci right 3.862005e-03	k: 9004	n:2380000
Cons ci ratio: 1.260331e-01	ci left: 3.806921e-04	ci right 4.323009e-04	k: 966	n:2380000
KS ci ratio: 4.739574e-03	ci left: 2.227232e-01	ci right 2.237817e-01	k: 531340	n:2380000
MTTP   2380000 perm   2652 sec   (897 perm/sec)   p_kst 2.232521e-01   p_cons 4.058824e-04   p_joint 3.783193e-03

Joint ci ratio: 4.115771e-02	ci left: 3.703339e-03	ci right 3.859373e-03	k: 9036	n:2390000
Cons ci ratio: 1.260332e-01	ci left: 3.790992e-04	ci right 4.304922e-04	k: 966	n:2390000
KS ci ratio: 4.729457e-03	ci left: 2.227383e-01	ci right 2.237946e-01	k: 533606	n:2390000
MTTP   2390000 perm   2672 sec   (894 perm/sec)   p_kst 2.232661e-01   p_cons 4.041841e-04   p_joint 3.780753e-03

Joint ci ratio: 4.064212e-02	ci left: 3.782765e-03	ci right 3.940102e-03	k: 9266	n:2400000
Cons ci ratio: 1.258382e-01	ci left: 3.787302e-04	ci right 4.299878e-04	k: 969	n:2400000
KS ci ratio: 4.719399e-03	ci left: 2.227537e-01	ci right 2.238078e-01	k: 535873	n:2400000
MTTP   2400000 perm   2692 sec   (891 perm/sec)   p_kst 2.232804e-01   p_cons 4.037500e-04   p_joint 3.860833e-03

Joint ci ratio: 4.055686e-02	ci left: 3.783087e-03	ci right 3.940100e-03	k: 9305	n:2410000
Cons ci ratio: 1.254507e-01	ci left: 3.795701e-04	ci right 4.307715e-04	k: 975	n:2410000
KS ci ratio: 4.709416e-03	ci left: 2.227681e-01	ci right 2.238201e-01	k: 538138	n:2410000
MTTP   2410000 perm   2713 sec   (888 perm/sec)   p_kst 2.232938e-01   p_cons 4.045643e-04   p_joint 3.860996e-03

Joint ci ratio: 4.046562e-02	ci left: 3.784634e-03	ci right 3.941350e-03	k: 9347	n:2420000
Cons ci ratio: 1.248761e-01	ci left: 3.816042e-04	ci right 4.328268e-04	k: 984	n:2420000
KS ci ratio: 4.699720e-03	ci left: 2.227659e-01	ci right 2.238157e-01	k: 540363	n:2420000
MTTP   2420000 perm   2733 sec   (885 perm/sec)   p_kst 2.232905e-01   p_cons 4.066116e-04   p_joint 3.862397e-03

Joint ci ratio: 4.081588e-02	ci left: 3.704289e-03	ci right 3.859037e-03	k: 9188	n:2430000
Cons ci ratio: 1.246234e-01	ci left: 3.816286e-04	ci right 4.327430e-04	k: 988	n:2430000
KS ci ratio: 4.690162e-03	ci left: 2.227580e-01	ci right 2.238056e-01	k: 542574	n:2430000
MTTP   2430000 perm   2753 sec   (883 perm/sec)   p_kst 2.232815e-01   p_cons 4.065844e-04   p_joint 3.781070e-03

Joint ci ratio: 4.071182e-02	ci left: 3.708174e-03	ci right 3.862680e-03	k: 9235	n:2440000
Cons ci ratio: 1.241846e-01	ci left: 3.828441e-04	ci right 4.339275e-04	k: 995	n:2440000
KS ci ratio: 4.680352e-03	ci left: 2.227731e-01	ci right 2.238186e-01	k: 544841	n:2440000
MTTP   2440000 perm   2773 sec   (880 perm/sec)   p_kst 2.232955e-01   p_cons 4.077869e-04   p_joint 3.784836e-03

Joint ci ratio: 4.063492e-02	ci left: 3.707179e-03	ci right 3.861345e-03	k: 9270	n:2450000
Cons ci ratio: 1.239980e-01	ci left: 3.824680e-04	ci right 4.334189e-04	k: 998	n:2450000
KS ci ratio: 4.670631e-03	ci left: 2.227860e-01	ci right 2.238294e-01	k: 547103	n:2450000
MTTP   2450000 perm   2794 sec   (877 perm/sec)   p_kst 2.233073e-01   p_cons 4.073469e-04   p_joint 3.783673e-03

Joint ci ratio: 4.054097e-02	ci left: 3.709412e-03	ci right 3.863305e-03	k: 9313	n:2460000
Cons ci ratio: 1.236888e-01	ci left: 3.828828e-04	ci right 4.337525e-04	k: 1003	n:2460000
KS ci ratio: 4.661385e-03	ci left: 2.227679e-01	ci right 2.238091e-01	k: 549289	n:2460000
MTTP   2460000 perm   2814 sec   (874 perm/sec)   p_kst 2.232882e-01   p_cons 4.077236e-04   p_joint 3.785772e-03

Joint ci ratio: 4.046938e-02	ci left: 3.707619e-03	ci right 3.861160e-03	k: 9346	n:2470000
Cons ci ratio: 1.233820e-01	ci left: 3.832944e-04	ci right 4.340832e-04	k: 1008	n:2470000
KS ci ratio: 4.651766e-03	ci left: 2.227820e-01	ci right 2.238211e-01	k: 551554	n:2470000
MTTP   2470000 perm   2834 sec   (872 perm/sec)   p_kst 2.233012e-01   p_cons 4.080972e-04   p_joint 3.783806e-03

Joint ci ratio: 4.041115e-02	ci left: 3.703445e-03	ci right 3.856588e-03	k: 9373	n:2480000
Cons ci ratio: 1.232599e-01	ci left: 3.825304e-04	ci right 4.331642e-04	k: 1010	n:2480000
KS ci ratio: 4.642971e-03	ci left: 2.227387e-01	ci right 2.237757e-01	k: 553677	n:2480000
MTTP   2480000 perm   2854 sec   (869 perm/sec)   p_kst 2.232569e-01   p_cons 4.072581e-04   p_joint 3.779435e-03

Joint ci ratio: 4.032948e-02	ci left: 3.703679e-03	ci right 3.856515e-03	k: 9411	n:2490000
Cons ci ratio: 1.230168e-01	ci left: 3.825511e-04	ci right 4.330805e-04	k: 1014	n:2490000
KS ci ratio: 4.633862e-03	ci left: 2.227231e-01	ci right 2.237579e-01	k: 555868	n:2490000
MTTP   2490000 perm   2875 sec   (866 perm/sec)   p_kst 2.232402e-01   p_cons 4.072289e-04   p_joint 3.779518e-03

Joint ci ratio: 4.024618e-02	ci left: 3.704307e-03	ci right 3.856846e-03	k: 9450	n:2500000
Cons ci ratio: 1.228354e-01	ci left: 3.821840e-04	ci right 4.325850e-04	k: 1017	n:2500000
KS ci ratio: 4.624384e-03	ci left: 2.227391e-01	ci right 2.237719e-01	k: 558138	n:2500000
MTTP   2500000 perm   2895 sec   (864 perm/sec)   p_kst 2.232552e-01   p_cons 4.068000e-04   p_joint 3.780000e-03

Joint ci ratio: 4.044456e-02	ci left: 3.653264e-03	ci right 3.804459e-03	k: 9358	n:2510000
Cons ci ratio: 1.225948e-01	ci left: 3.822060e-04	ci right 4.325041e-04	k: 1021	n:2510000
KS ci ratio: 4.615293e-03	ci left: 2.227304e-01	ci right 2.237611e-01	k: 560346	n:2510000
MTTP   2510000 perm   2916 sec   (861 perm/sec)   p_kst 2.232454e-01   p_cons 4.067729e-04   p_joint 3.728287e-03

Joint ci ratio: 4.036485e-02	ci left: 3.653301e-03	ci right 3.804192e-03	k: 9395	n:2520000
Cons ci ratio: 1.224751e-01	ci left: 3.814587e-04	ci right 4.316058e-04	k: 1023	n:2520000
KS ci ratio: 4.606287e-03	ci left: 2.227193e-01	ci right 2.237480e-01	k: 562548	n:2520000
MTTP   2520000 perm   2937 sec   (858 perm/sec)   p_kst 2.232333e-01   p_cons 4.059524e-04   p_joint 3.728175e-03

Joint ci ratio: 4.028775e-02	ci left: 3.652947e-03	ci right 3.803529e-03	k: 9431	n:2530000
Cons ci ratio: 1.221771e-01	ci left: 3.818667e-04	ci right 4.319366e-04	k: 1028	n:2530000
KS ci ratio: 4.597119e-03	ci left: 2.227246e-01	ci right 2.237512e-01	k: 564791	n:2530000
MTTP   2530000 perm   2958 sec   (855 perm/sec)   p_kst 2.232375e-01   p_cons 4.063241e-04   p_joint 3.727668e-03

Joint ci ratio: 4.018980e-02	ci left: 3.656493e-03	ci right 3.806847e-03	k: 9477	n:2540000
Cons ci ratio: 1.217049e-01	ci left: 3.834169e-04	ci right 4.334816e-04	k: 1036	n:2540000
KS ci ratio: 4.587979e-03	ci left: 2.227317e-01	ci right 2.237563e-01	k: 567039	n:2540000
MTTP   2540000 perm   2980 sec   (852 perm/sec)   p_kst 2.232437e-01   p_cons 4.078740e-04   p_joint 3.731102e-03

Joint ci ratio: 4.011582e-02	ci left: 3.655741e-03	ci right 3.805781e-03	k: 9512	n:2550000
Cons ci ratio: 1.214708e-01	ci left: 3.834342e-04	ci right 4.333980e-04	k: 1040	n:2550000
KS ci ratio: 4.579381e-03	ci left: 2.227020e-01	ci right 2.237245e-01	k: 569193	n:2550000
MTTP   2550000 perm   3001 sec   (850 perm/sec)   p_kst 2.232129e-01   p_cons 4.078431e-04   p_joint 3.730196e-03

Joint ci ratio: 4.004224e-02	ci left: 3.654996e-03	ci right 3.804724e-03	k: 9547	n:2560000
Cons ci ratio: 1.212381e-01	ci left: 3.834515e-04	ci right 4.333150e-04	k: 1044	n:2560000
KS ci ratio: 4.570202e-03	ci left: 2.227201e-01	ci right 2.237407e-01	k: 571469	n:2560000
MTTP   2560000 perm   3022 sec   (847 perm/sec)   p_kst 2.232301e-01   p_cons 4.078125e-04   p_joint 3.729297e-03

Joint ci ratio: 3.998163e-02	ci left: 3.651945e-03	ci right 3.801316e-03	k: 9576	n:2570000
Cons ci ratio: 1.210067e-01	ci left: 3.834687e-04	ci right 4.332325e-04	k: 1048	n:2570000
KS ci ratio: 4.561027e-03	ci left: 2.227420e-01	ci right 2.237606e-01	k: 573755	n:2570000
MTTP   2570000 perm   3043 sec   (845 perm/sec)   p_kst 2.232510e-01   p_cons 4.077821e-04   p_joint 3.726070e-03

Joint ci ratio: 4.021866e-02	ci left: 3.594813e-03	ci right 3.742739e-03	k: 9464	n:2580000
Cons ci ratio: 1.207767e-01	ci left: 3.834859e-04	ci right 4.331505e-04	k: 1052	n:2580000
KS ci ratio: 4.552386e-03	ci left: 2.227273e-01	ci right 2.237439e-01	k: 575947	n:2580000
MTTP   2580000 perm   3065 sec   (842 perm/sec)   p_kst 2.232353e-01   p_cons 4.077519e-04   p_joint 3.668217e-03

Joint ci ratio: 4.037983e-02	ci left: 3.552266e-03	ci right 3.699040e-03	k: 9389	n:2590000
Cons ci ratio: 1.206622e-01	ci left: 3.827541e-04	ci right 4.322736e-04	k: 1054	n:2590000
KS ci ratio: 4.543353e-03	ci left: 2.227462e-01	ci right 2.237609e-01	k: 578226	n:2590000
MTTP   2590000 perm   3086 sec   (839 perm/sec)   p_kst 2.232533e-01   p_cons 4.069498e-04   p_joint 3.625097e-03

Joint ci ratio: 4.028764e-02	ci left: 3.554975e-03	ci right 3.701518e-03	k: 9432	n:2600000
Cons ci ratio: 1.203205e-01	ci left: 3.835202e-04	ci right 4.329883e-04	k: 1060	n:2600000
KS ci ratio: 4.534700e-03	ci left: 2.227401e-01	ci right 2.237528e-01	k: 580440	n:2600000
MTTP   2600000 perm   3107 sec   (837 perm/sec)   p_kst 2.232462e-01   p_cons 4.076923e-04   p_joint 3.627692e-03

Joint ci ratio: 4.021311e-02	ci left: 3.554630e-03	ci right 3.700881e-03	k: 9467	n:2610000
Cons ci ratio: 1.199817e-01	ci left: 3.842805e-04	ci right 4.336972e-04	k: 1066	n:2610000
KS ci ratio: 4.525767e-03	ci left: 2.227593e-01	ci right 2.237701e-01	k: 582720	n:2610000
MTTP   2610000 perm   3130 sec   (834 perm/sec)   p_kst 2.232644e-01   p_cons 4.084291e-04   p_joint 3.627203e-03

Joint ci ratio: 4.014748e-02	ci left: 3.552775e-03	ci right 3.698707e-03	k: 9498	n:2620000
Cons ci ratio: 1.198134e-01	ci left: 3.839245e-04	ci right 4.332212e-04	k: 1069	n:2620000
KS ci ratio: 4.516896e-03	ci left: 2.227775e-01	ci right 2.237864e-01	k: 584998	n:2620000
MTTP   2620000 perm   3151 sec   (831 perm/sec)   p_kst 2.232817e-01   p_cons 4.080153e-04   p_joint 3.625191e-03

Joint ci ratio: 4.009907e-02	ci left: 3.547924e-03	ci right 3.693476e-03	k: 9521	n:2630000
Cons ci ratio: 1.197016e-01	ci left: 3.832024e-04	ci right 4.323572e-04	k: 1071	n:2630000
KS ci ratio: 4.508389e-03	ci left: 2.227717e-01	ci right 2.237787e-01	k: 587213	n:2630000
MTTP   2630000 perm   3172 sec   (829 perm/sec)   p_kst 2.232749e-01   p_cons 4.072243e-04   p_joint 3.620152e-03

Joint ci ratio: 4.005504e-02	ci left: 3.542360e-03	ci right 3.687520e-03	k: 9542	n:2640000
Cons ci ratio: 1.195345e-01	ci left: 3.828532e-04	ci right 4.318899e-04	k: 1074	n:2640000
KS ci ratio: 4.500397e-03	ci left: 2.227300e-01	ci right 2.237350e-01	k: 589333	n:2640000
MTTP   2640000 perm   3194 sec   (827 perm/sec)   p_kst 2.232322e-01   p_cons 4.068182e-04   p_joint 3.614394e-03

Joint ci ratio: 3.997970e-02	ci left: 3.542441e-03	ci right 3.687326e-03	k: 9578	n:2650000
Cons ci ratio: 1.192575e-01	ci left: 3.832389e-04	ci right 4.322032e-04	k: 1079	n:2650000
KS ci ratio: 4.491962e-03	ci left: 2.227259e-01	ci right 2.237290e-01	k: 591552	n:2650000
MTTP   2650000 perm   3216 sec   (824 perm/sec)   p_kst 2.232272e-01   p_cons 4.071698e-04   p_joint 3.614340e-03

Joint ci ratio: 3.991521e-02	ci left: 3.540661e-03	ci right 3.685235e-03	k: 9609	n:2660000
Cons ci ratio: 1.189823e-01	ci left: 3.836219e-04	ci right 4.325141e-04	k: 1084	n:2660000
KS ci ratio: 4.483643e-03	ci left: 2.227166e-01	ci right 2.237178e-01	k: 593757	n:2660000
MTTP   2660000 perm   3238 sec   (821 perm/sec)   p_kst 2.232169e-01   p_cons 4.075188e-04   p_joint 3.612406e-03

Joint ci ratio: 3.983651e-02	ci left: 3.541491e-03	ci right 3.685806e-03	k: 9647	n:2670000
Cons ci ratio: 1.187091e-01	ci left: 3.840021e-04	ci right 4.328225e-04	k: 1089	n:2670000
KS ci ratio: 4.475646e-03	ci left: 2.226861e-01	ci right 2.236853e-01	k: 595905	n:2670000
MTTP   2670000 perm   3260 sec   (819 perm/sec)   p_kst 2.231854e-01   p_cons 4.078652e-04   p_joint 3.613109e-03

Joint ci ratio: 3.925109e-02	ci left: 3.635049e-03	ci right 3.780952e-03	k: 9936	n:2680000
Cons ci ratio: 1.183297e-01	ci left: 3.851037e-04	ci right 4.338968e-04	k: 1096	n:2680000
KS ci ratio: 4.467129e-03	ci left: 2.226994e-01	ci right 2.236968e-01	k: 598170	n:2680000
MTTP   2680000 perm   3282 sec   (816 perm/sec)   p_kst 2.231978e-01   p_cons 4.089552e-04   p_joint 3.707463e-03

Joint ci ratio: 3.917822e-02	ci left: 3.635156e-03	ci right 3.780785e-03	k: 9973	n:2690000
Cons ci ratio: 1.181683e-01	ci left: 3.847544e-04	ci right 4.334320e-04	k: 1099	n:2690000
KS ci ratio: 4.459086e-03	ci left: 2.226795e-01	ci right 2.236750e-01	k: 600346	n:2690000
MTTP   2690000 perm   3305 sec   (814 perm/sec)   p_kst 2.231770e-01   p_cons 4.085502e-04   p_joint 3.707435e-03

Joint ci ratio: 3.909595e-02	ci left: 3.637096e-03	ci right 3.782490e-03	k: 10015	n:2700000
Cons ci ratio: 1.179006e-01	ci left: 3.851266e-04	ci right 4.337332e-04	k: 1104	n:2700000
KS ci ratio: 4.450815e-03	ci left: 2.226809e-01	ci right 2.236745e-01	k: 602579	n:2700000
MTTP   2700000 perm   3327 sec   (811 perm/sec)   p_kst 2.231774e-01   p_cons 4.088889e-04   p_joint 3.709259e-03

Joint ci ratio: 3.901810e-02	ci left: 3.638291e-03	ci right 3.783437e-03	k: 10055	n:2710000
Cons ci ratio: 1.175817e-01	ci left: 3.858542e-04	ci right 4.344119e-04	k: 1110	n:2710000
KS ci ratio: 4.442277e-03	ci left: 2.227066e-01	ci right 2.236984e-01	k: 604878	n:2710000
MTTP   2710000 perm   3350 sec   (809 perm/sec)   p_kst 2.232022e-01   p_cons 4.095941e-04   p_joint 3.710332e-03

Joint ci ratio: 3.896008e-02	ci left: 3.635837e-03	ci right 3.780664e-03	k: 10085	n:2720000
Cons ci ratio: 1.174233e-01	ci left: 3.855062e-04	ci right 4.339501e-04	k: 1113	n:2720000
KS ci ratio: 4.434113e-03	ci left: 2.227067e-01	ci right 2.236968e-01	k: 607108	n:2720000
MTTP   2720000 perm   3372 sec   (807 perm/sec)   p_kst 2.232015e-01   p_cons 4.091912e-04   p_joint 3.707721e-03

Joint ci ratio: 3.887918e-02	ci left: 3.637754e-03	ci right 3.782350e-03	k: 10127	n:2730000
Cons ci ratio: 1.171084e-01	ci left: 3.862274e-04	ci right 4.346228e-04	k: 1119	n:2730000
KS ci ratio: 4.425672e-03	ci left: 2.227322e-01	ci right 2.237204e-01	k: 609407	n:2730000
MTTP   2730000 perm   3395 sec   (804 perm/sec)   p_kst 2.232260e-01   p_cons 4.098901e-04   p_joint 3.709524e-03

Joint ci ratio: 3.880452e-02	ci left: 3.638573e-03	ci right 3.782917e-03	k: 10166	n:2740000
Cons ci ratio: 1.168998e-01	ci left: 3.862350e-04	ci right 4.345391e-04	k: 1123	n:2740000
KS ci ratio: 4.417469e-03	ci left: 2.227425e-01	ci right 2.237289e-01	k: 611665	n:2740000
MTTP   2740000 perm   3418 sec   (802 perm/sec)   p_kst 2.232354e-01   p_cons 4.098540e-04   p_joint 3.710219e-03

Joint ci ratio: 3.873411e-02	ci left: 3.638665e-03	ci right 3.782746e-03	k: 10203	n:2750000
Cons ci ratio: 1.168479e-01	ci left: 3.851835e-04	ci right 4.333333e-04	k: 1124	n:2750000
KS ci ratio: 4.409380e-03	ci left: 2.227472e-01	ci right 2.237319e-01	k: 613908	n:2750000
MTTP   2750000 perm   3441 sec   (799 perm/sec)   p_kst 2.232393e-01   p_cons 4.087273e-04   p_joint 3.710182e-03

Joint ci ratio: 3.882997e-02	ci left: 3.607541e-03	ci right 3.750750e-03	k: 10153	n:2760000
Cons ci ratio: 1.165891e-01	ci left: 3.855466e-04	ci right 4.336277e-04	k: 1129	n:2760000
KS ci ratio: 4.401263e-03	ci left: 2.227577e-01	ci right 2.237407e-01	k: 616167	n:2760000
MTTP   2760000 perm   3464 sec   (797 perm/sec)   p_kst 2.232489e-01   p_cons 4.090580e-04   p_joint 3.678623e-03

Joint ci ratio: 3.875369e-02	ci left: 3.608817e-03	ci right 3.751790e-03	k: 10193	n:2770000
Cons ci ratio: 1.165376e-01	ci left: 3.845052e-04	ci right 4.324338e-04	k: 1130	n:2770000
KS ci ratio: 4.393350e-03	ci left: 2.227556e-01	ci right 2.237367e-01	k: 618391	n:2770000
MTTP   2770000 perm   3487 sec   (794 perm/sec)   p_kst 2.232458e-01   p_cons 4.079422e-04   p_joint 3.679783e-03

Joint ci ratio: 3.879216e-02	ci left: 3.588711e-03	ci right 3.731031e-03	k: 10173	n:2780000
Cons ci ratio: 1.162808e-01	ci left: 3.848683e-04	ci right 4.327292e-04	k: 1135	n:2780000
KS ci ratio: 4.385166e-03	ci left: 2.227782e-01	ci right 2.237576e-01	k: 620684	n:2780000
MTTP   2780000 perm   3510 sec   (792 perm/sec)   p_kst 2.232676e-01   p_cons 4.082734e-04   p_joint 3.659353e-03

Joint ci ratio: 3.872943e-02	ci left: 3.587561e-03	ci right 3.729601e-03	k: 10206	n:2790000
Cons ci ratio: 1.161786e-01	ci left: 3.841848e-04	ci right 4.319159e-04	k: 1137	n:2790000
KS ci ratio: 4.377344e-03	ci left: 2.227756e-01	ci right 2.237533e-01	k: 622907	n:2790000
MTTP   2790000 perm   3533 sec   (790 perm/sec)   p_kst 2.232642e-01   p_cons 4.075269e-04   p_joint 3.658065e-03

Joint ci ratio: 3.968538e-02	ci left: 3.403579e-03	ci right 3.541736e-03	k: 9722	n:2800000
Cons ci ratio: 1.159750e-01	ci left: 3.841998e-04	ci right 4.318433e-04	k: 1141	n:2800000
KS ci ratio: 4.369730e-03	ci left: 2.227599e-01	ci right 2.237357e-01	k: 625093	n:2800000
MTTP   2800000 perm   3557 sec   (787 perm/sec)   p_kst 2.232475e-01   p_cons 4.075000e-04   p_joint 3.472143e-03

Joint ci ratio: 3.962636e-02	ci left: 3.401685e-03	ci right 3.539555e-03	k: 9751	n:2810000
Cons ci ratio: 1.158736e-01	ci left: 3.835237e-04	ci right 4.310389e-04	k: 1143	n:2810000
KS ci ratio: 4.361614e-03	ci left: 2.227872e-01	ci right 2.237614e-01	k: 627400	n:2810000
MTTP   2810000 perm   3580 sec   (785 perm/sec)   p_kst 2.232740e-01   p_cons 4.067616e-04   p_joint 3.470107e-03

Joint ci ratio: 3.956965e-02	ci left: 3.399453e-03	ci right 3.537031e-03	k: 9779	n:2820000
Cons ci ratio: 1.158231e-01	ci left: 3.825080e-04	ci right 4.298753e-04	k: 1144	n:2820000
KS ci ratio: 4.354242e-03	ci left: 2.227588e-01	ci right 2.237312e-01	k: 629550	n:2820000
MTTP   2820000 perm   3603 sec   (783 perm/sec)   p_kst 2.232447e-01   p_cons 4.056738e-04   p_joint 3.467730e-03

Joint ci ratio: 3.835326e-02	ci left: 3.607195e-03	ci right 3.748594e-03	k: 10407	n:2830000
Cons ci ratio: 1.157221e-01	ci left: 3.818426e-04	ci right 4.290835e-04	k: 1146	n:2830000
KS ci ratio: 4.346363e-03	ci left: 2.227739e-01	ci right 2.237446e-01	k: 631823	n:2830000
MTTP   2830000 perm   3627 sec   (780 perm/sec)   p_kst 2.232590e-01   p_cons 4.049470e-04   p_joint 3.677385e-03

Joint ci ratio: 3.827975e-02	ci left: 3.608443e-03	ci right 3.749614e-03	k: 10447	n:2840000
Cons ci ratio: 1.153705e-01	ci left: 3.828916e-04	ci right 4.301086e-04	k: 1153	n:2840000
KS ci ratio: 4.338588e-03	ci left: 2.227841e-01	ci right 2.237531e-01	k: 634082	n:2840000
MTTP   2840000 perm   3650 sec   (778 perm/sec)   p_kst 2.232683e-01   p_cons 4.059859e-04   p_joint 3.678521e-03

Joint ci ratio: 3.880348e-02	ci left: 3.498827e-03	ci right 3.637624e-03	k: 10168	n:2850000
Cons ci ratio: 1.151711e-01	ci left: 3.829112e-04	ci right 4.300434e-04	k: 1157	n:2850000
KS ci ratio: 4.331008e-03	ci left: 2.227819e-01	ci right 2.237492e-01	k: 636306	n:2850000
MTTP   2850000 perm   3674 sec   (776 perm/sec)   p_kst 2.232653e-01   p_cons 4.059649e-04   p_joint 3.567719e-03

Joint ci ratio: 3.872355e-02	ci left: 3.501136e-03	ci right 3.639732e-03	k: 10210	n:2860000
Cons ci ratio: 1.150222e-01	ci left: 3.825911e-04	ci right 4.296189e-04	k: 1160	n:2860000
KS ci ratio: 4.323110e-03	ci left: 2.228084e-01	ci right 2.237740e-01	k: 638612	n:2860000
MTTP   2860000 perm   3697 sec   (774 perm/sec)   p_kst 2.232909e-01   p_cons 4.055944e-04   p_joint 3.569930e-03

Joint ci ratio: 3.865736e-02	ci left: 3.501014e-03	ci right 3.639363e-03	k: 10245	n:2870000
Cons ci ratio: 1.147261e-01	ci left: 3.832886e-04	ci right 4.302726e-04	k: 1166	n:2870000
KS ci ratio: 4.315550e-03	ci left: 2.228110e-01	ci right 2.237749e-01	k: 640850	n:2870000
MTTP   2870000 perm   3721 sec   (771 perm/sec)   p_kst 2.232927e-01   p_cons 4.062718e-04   p_joint 3.569686e-03

Joint ci ratio: 3.858398e-02	ci left: 3.502269e-03	ci right 3.640399e-03	k: 10284	n:2880000
Cons ci ratio: 1.145300e-01	ci left: 3.833068e-04	ci right 4.302073e-04	k: 1170	n:2880000
KS ci ratio: 4.307757e-03	ci left: 2.228354e-01	ci right 2.237978e-01	k: 643151	n:2880000
MTTP   2880000 perm   3745 sec   (769 perm/sec)   p_kst 2.233163e-01   p_cons 4.062500e-04   p_joint 3.570833e-03

Joint ci ratio: 3.862758e-02	ci left: 3.482268e-03	ci right 3.619768e-03	k: 10261	n:2890000
Cons ci ratio: 1.143836e-01	ci left: 3.829888e-04	ci right 4.297864e-04	k: 1173	n:2890000
KS ci ratio: 4.300084e-03	ci left: 2.228535e-01	ci right 2.238142e-01	k: 645434	n:2890000
MTTP   2890000 perm   3769 sec   (767 perm/sec)   p_kst 2.233336e-01   p_cons 4.058824e-04   p_joint 3.550519e-03

Joint ci ratio: 3.856000e-02	ci left: 3.482554e-03	ci right 3.619820e-03	k: 10297	n:2900000
Cons ci ratio: 1.141892e-01	ci left: 3.830080e-04	ci right 4.297231e-04	k: 1177	n:2900000
KS ci ratio: 4.292712e-03	ci left: 2.228504e-01	ci right 2.238094e-01	k: 647656	n:2900000
MTTP   2900000 perm   3792 sec   (765 perm/sec)   p_kst 2.233297e-01   p_cons 4.058621e-04   p_joint 3.550690e-03

Joint ci ratio: 3.864507e-02	ci left: 3.455271e-03	ci right 3.591768e-03	k: 10252	n:2910000
Cons ci ratio: 1.140441e-01	ci left: 3.826933e-04	ci right 4.293068e-04	k: 1180	n:2910000
KS ci ratio: 4.285149e-03	ci left: 2.228659e-01	ci right 2.238233e-01	k: 649932	n:2910000
MTTP   2910000 perm   3816 sec   (763 perm/sec)   p_kst 2.233443e-01   p_cons 4.054983e-04   p_joint 3.523024e-03

Joint ci ratio: 3.857740e-02	ci left: 3.455647e-03	ci right 3.591915e-03	k: 10288	n:2920000
Cons ci ratio: 1.139477e-01	ci left: 3.820481e-04	ci right 4.285410e-04	k: 1182	n:2920000
KS ci ratio: 4.277887e-03	ci left: 2.228601e-01	ci right 2.238158e-01	k: 652146	n:2920000
MTTP   2920000 perm   3840 sec   (760 perm/sec)   p_kst 2.233377e-01   p_cons 4.047945e-04   p_joint 3.523288e-03

Joint ci ratio: 3.849512e-02	ci left: 3.458726e-03	ci right 3.594818e-03	k: 10332	n:2930000
Cons ci ratio: 1.137556e-01	ci left: 3.820705e-04	ci right 4.284825e-04	k: 1186	n:2930000
KS ci ratio: 4.270502e-03	ci left: 2.228672e-01	ci right 2.238214e-01	k: 654398	n:2930000
MTTP   2930000 perm   3866 sec   (758 perm/sec)   p_kst 2.233440e-01   p_cons 4.047782e-04   p_joint 3.526280e-03

Joint ci ratio: 3.842823e-02	ci left: 3.459089e-03	ci right 3.594953e-03	k: 10368	n:2940000
Cons ci ratio: 1.136599e-01	ci left: 3.814319e-04	ci right 4.277247e-04	k: 1188	n:2940000
KS ci ratio: 4.263164e-03	ci left: 2.228737e-01	ci right 2.238262e-01	k: 656648	n:2940000
MTTP   2940000 perm   3889 sec   (756 perm/sec)   p_kst 2.233497e-01   p_cons 4.040816e-04   p_joint 3.526531e-03

Joint ci ratio: 3.836169e-02	ci left: 3.459449e-03	ci right 3.595088e-03	k: 10404	n:2950000
Cons ci ratio: 1.133742e-01	ci left: 3.821151e-04	ci right 4.283664e-04	k: 1194	n:2950000
KS ci ratio: 4.255905e-03	ci left: 2.228767e-01	ci right 2.238276e-01	k: 658888	n:2950000
MTTP   2950000 perm   3914 sec   (754 perm/sec)   p_kst 2.233519e-01   p_cons 4.047458e-04   p_joint 3.526780e-03

Joint ci ratio: 3.829181e-02	ci left: 3.460477e-03	ci right 3.595903e-03	k: 10442	n:2960000
Cons ci ratio: 1.131849e-01	ci left: 3.821372e-04	ci right 4.283088e-04	k: 1198	n:2960000
KS ci ratio: 4.248708e-03	ci left: 2.228777e-01	ci right 2.238269e-01	k: 661122	n:2960000
MTTP   2960000 perm   3939 sec   (752 perm/sec)   p_kst 2.233520e-01   p_cons 4.047297e-04   p_joint 3.527703e-03

Joint ci ratio: 3.806771e-02	ci left: 3.489845e-03	ci right 3.625604e-03	k: 10565	n:2970000
Cons ci ratio: 1.130436e-01	ci left: 3.818321e-04	ci right 4.279053e-04	k: 1201	n:2970000
KS ci ratio: 4.241716e-03	ci left: 2.228648e-01	ci right 2.238125e-01	k: 663315	n:2970000
MTTP   2970000 perm   3963 sec   (749 perm/sec)   p_kst 2.233384e-01   p_cons 4.043771e-04   p_joint 3.557239e-03

Joint ci ratio: 3.801562e-02	ci left: 3.487773e-03	ci right 3.623261e-03	k: 10594	n:2980000
Cons ci ratio: 1.129028e-01	ci left: 3.815290e-04	ci right 4.275046e-04	k: 1204	n:2980000
KS ci ratio: 4.234591e-03	ci left: 2.228658e-01	ci right 2.238119e-01	k: 665549	n:2980000
MTTP   2980000 perm   3988 sec   (747 perm/sec)   p_kst 2.233386e-01   p_cons 4.040268e-04   p_joint 3.555034e-03

Joint ci ratio: 3.823741e-02	ci left: 3.435693e-03	ci right 3.569954e-03	k: 10472	n:2990000
Cons ci ratio: 1.125298e-01	ci left: 3.828532e-04	ci right 4.288258e-04	k: 1212	n:2990000
KS ci ratio: 4.227444e-03	ci left: 2.228715e-01	ci right 2.238160e-01	k: 667797	n:2990000
MTTP   2990000 perm   4012 sec   (745 perm/sec)   p_kst 2.233435e-01   p_cons 4.053512e-04   p_joint 3.502341e-03

Joint ci ratio: 3.817733e-02	ci left: 3.435135e-03	ci right 3.569159e-03	k: 10505	n:3000000
Cons ci ratio: 1.124835e-01	ci left: 3.819009e-04	ci right 4.277391e-04	k: 1213	n:3000000
KS ci ratio: 4.220520e-03	ci left: 2.228618e-01	ci right 2.238047e-01	k: 669999	n:3000000
MTTP   3000000 perm   4037 sec   (743 perm/sec)   p_kst 2.233330e-01   p_cons 4.043333e-04   p_joint 3.501667e-03

Joint ci ratio: 3.809214e-02	ci left: 3.439189e-03	ci right 3.573065e-03	k: 10552	n:3010000
Cons ci ratio: 1.123448e-01	ci left: 3.816008e-04	ci right 4.273427e-04	k: 1216	n:3010000
KS ci ratio: 4.213476e-03	ci left: 2.228648e-01	ci right 2.238061e-01	k: 672239	n:3010000
MTTP   3010000 perm   4061 sec   (741 perm/sec)   p_kst 2.233352e-01   p_cons 4.039867e-04   p_joint 3.505648e-03

Joint ci ratio: 3.802553e-02	ci left: 3.439936e-03	ci right 3.573602e-03	k: 10589	n:3020000
Cons ci ratio: 1.120230e-01	ci left: 3.825901e-04	ci right 4.283105e-04	k: 1223	n:3020000
KS ci ratio: 4.206613e-03	ci left: 2.228559e-01	ci right 2.237956e-01	k: 674443	n:3020000
MTTP   3020000 perm   4085 sec   (739 perm/sec)   p_kst 2.233255e-01   p_cons 4.049669e-04   p_joint 3.506291e-03

Joint ci ratio: 3.796105e-02	ci left: 3.440351e-03	ci right 3.573802e-03	k: 10625	n:3030000
Cons ci ratio: 1.118404e-01	ci left: 3.826106e-04	ci right 4.282540e-04	k: 1227	n:3030000
KS ci ratio: 4.199674e-03	ci left: 2.228559e-01	ci right 2.237941e-01	k: 676674	n:3030000
MTTP   3030000 perm   4110 sec   (737 perm/sec)   p_kst 2.233248e-01   p_cons 4.049505e-04   p_joint 3.506601e-03

Joint ci ratio: 3.790404e-02	ci left: 3.439461e-03	ci right 3.572672e-03	k: 10657	n:3040000
Cons ci ratio: 1.114778e-01	ci left: 3.839101e-04	ci right 4.295503e-04	k: 1235	n:3040000
KS ci ratio: 4.192814e-03	ci left: 2.228523e-01	ci right 2.237890e-01	k: 678894	n:3040000
MTTP   3040000 perm   4135 sec   (735 perm/sec)   p_kst 2.233204e-01   p_cons 4.062500e-04   p_joint 3.505592e-03

Joint ci ratio: 3.784196e-02	ci left: 3.439551e-03	ci right 3.572542e-03	k: 10692	n:3050000
Cons ci ratio: 1.113428e-01	ci left: 3.836076e-04	ci right 4.291530e-04	k: 1238	n:3050000
KS ci ratio: 4.186133e-03	ci left: 2.228367e-01	ci right 2.237717e-01	k: 681077	n:3050000
MTTP   3050000 perm   4159 sec   (733 perm/sec)   p_kst 2.233039e-01   p_cons 4.059016e-04   p_joint 3.505574e-03

Joint ci ratio: 3.778548e-02	ci left: 3.438669e-03	ci right 3.571424e-03	k: 10724	n:3060000
Cons ci ratio: 1.110741e-01	ci left: 3.842602e-04	ci right 4.297658e-04	k: 1244	n:3060000
KS ci ratio: 4.179304e-03	ci left: 2.228361e-01	ci right 2.237697e-01	k: 683306	n:3060000
MTTP   3060000 perm   4184 sec   (731 perm/sec)   p_kst 2.233026e-01   p_cons 4.065359e-04   p_joint 3.504575e-03

Joint ci ratio: 3.773101e-02	ci left: 3.437471e-03	ci right 3.569983e-03	k: 10755	n:3070000
Cons ci ratio: 1.110296e-01	ci left: 3.833252e-04	ci right 4.287007e-04	k: 1245	n:3070000
KS ci ratio: 4.172390e-03	ci left: 2.228453e-01	ci right 2.237774e-01	k: 685565	n:3070000
MTTP   3070000 perm   4209 sec   (729 perm/sec)   p_kst 2.233111e-01   p_cons 4.055375e-04   p_joint 3.503257e-03

Joint ci ratio: 3.767854e-02	ci left: 3.435958e-03	ci right 3.568225e-03	k: 10785	n:3080000
Cons ci ratio: 1.108962e-01	ci left: 3.830276e-04	ci right 4.283099e-04	k: 1248	n:3080000
KS ci ratio: 4.165650e-03	ci left: 2.228428e-01	ci right 2.237733e-01	k: 687788	n:3080000
MTTP   3080000 perm   4234 sec   (728 perm/sec)   p_kst 2.233078e-01   p_cons 4.051948e-04   p_joint 3.501623e-03

Joint ci ratio: 3.778966e-02	ci left: 3.404642e-03	ci right 3.536097e-03	k: 10722	n:3090000
Cons ci ratio: 1.108519e-01	ci left: 3.821027e-04	ci right 4.272564e-04	k: 1249	n:3090000
KS ci ratio: 4.158932e-03	ci left: 2.228413e-01	ci right 2.237703e-01	k: 690014	n:3090000
MTTP   3090000 perm   4259 sec   (726 perm/sec)   p_kst 2.233055e-01   p_cons 4.042071e-04   p_joint 3.469903e-03

Joint ci ratio: 3.769826e-02	ci left: 3.410275e-03	ci right 3.541623e-03	k: 10774	n:3100000
Cons ci ratio: 1.105868e-01	ci left: 3.827520e-04	ci right 4.278672e-04	k: 1255	n:3100000
KS ci ratio: 4.152134e-03	ci left: 2.228491e-01	ci right 2.237766e-01	k: 692269	n:3100000
MTTP   3100000 perm   4283 sec   (724 perm/sec)   p_kst 2.233126e-01   p_cons 4.048387e-04   p_joint 3.475484e-03

Joint ci ratio: 3.765291e-02	ci left: 3.407591e-03	ci right 3.538674e-03	k: 10800	n:3110000
Cons ci ratio: 1.104550e-01	ci left: 3.824593e-04	ci right 4.274827e-04	k: 1258	n:3110000
KS ci ratio: 4.145315e-03	ci left: 2.228613e-01	ci right 2.237874e-01	k: 694538	n:3110000
MTTP   3110000 perm   4308 sec   (722 perm/sec)   p_kst 2.233241e-01   p_cons 4.045016e-04   p_joint 3.472669e-03

Joint ci ratio: 3.771449e-02	ci left: 3.385556e-03	ci right 3.516009e-03	k: 10765	n:3120000
Cons ci ratio: 1.102363e-01	ci left: 3.827918e-04	ci right 4.277593e-04	k: 1263	n:3120000
KS ci ratio: 4.138515e-03	ci left: 2.228748e-01	ci right 2.237994e-01	k: 696811	n:3120000
MTTP   3120000 perm   4333 sec   (720 perm/sec)   p_kst 2.233369e-01   p_cons 4.048077e-04   p_joint 3.450321e-03

Joint ci ratio: 3.764459e-02	ci left: 3.387399e-03	ci right 3.517676e-03	k: 10805	n:3130000
Cons ci ratio: 1.100622e-01	ci left: 3.828115e-04	ci right 4.277058e-04	k: 1267	n:3130000
KS ci ratio: 4.131702e-03	ci left: 2.228920e-01	ci right 2.238152e-01	k: 699096	n:3130000
MTTP   3130000 perm   4358 sec   (718 perm/sec)   p_kst 2.233534e-01   p_cons 4.047923e-04   p_joint 3.452077e-03

Joint ci ratio: 3.756291e-02	ci left: 3.391438e-03	ci right 3.521582e-03	k: 10852	n:3140000
Cons ci ratio: 1.098027e-01	ci left: 3.834507e-04	ci right 4.283071e-04	k: 1273	n:3140000
KS ci ratio: 4.125191e-03	ci left: 2.228866e-01	ci right 2.238082e-01	k: 701310	n:3140000
MTTP   3140000 perm   4384 sec   (716 perm/sec)   p_kst 2.233471e-01   p_cons 4.054140e-04   p_joint 3.456051e-03

Joint ci ratio: 3.750422e-02	ci left: 3.391364e-03	ci right 3.521297e-03	k: 10886	n:3150000
Cons ci ratio: 1.095879e-01	ci left: 3.837771e-04	ci right 4.285782e-04	k: 1278	n:3150000
KS ci ratio: 4.118764e-03	ci left: 2.228767e-01	ci right 2.237968e-01	k: 703510	n:3150000
MTTP   3150000 perm   4409 sec   (714 perm/sec)   p_kst 2.233365e-01   p_cons 4.057143e-04   p_joint 3.455873e-03

Joint ci ratio: 3.745096e-02	ci left: 3.390350e-03	ci right 3.520056e-03	k: 10917	n:3160000
Cons ci ratio: 1.094596e-01	ci left: 3.834860e-04	ci right 4.281973e-04	k: 1281	n:3160000
KS ci ratio: 4.112446e-03	ci left: 2.228602e-01	ci right 2.237789e-01	k: 705689	n:3160000
MTTP   3160000 perm   4434 sec   (713 perm/sec)   p_kst 2.233193e-01   p_cons 4.053797e-04   p_joint 3.454747e-03

Joint ci ratio: 3.739107e-02	ci left: 3.390593e-03	ci right 3.520096e-03	k: 10952	n:3170000
Cons ci ratio: 1.089929e-01	ci left: 3.856515e-04	ci right 4.304113e-04	k: 1292	n:3170000
KS ci ratio: 4.105858e-03	ci left: 2.228691e-01	ci right 2.237863e-01	k: 707948	n:3170000
MTTP   3170000 perm   4460 sec   (711 perm/sec)   p_kst 2.233274e-01   p_cons 4.075710e-04   p_joint 3.454890e-03

Joint ci ratio: 3.732635e-02	ci left: 3.391769e-03	ci right 3.521088e-03	k: 10990	n:3180000
Cons ci ratio: 1.089508e-01	ci left: 3.847447e-04	ci right 4.293808e-04	k: 1293	n:3180000
KS ci ratio: 4.099194e-03	ci left: 2.228870e-01	ci right 2.238028e-01	k: 710236	n:3180000
MTTP   3180000 perm   4486 sec   (709 perm/sec)   p_kst 2.233447e-01   p_cons 4.066038e-04   p_joint 3.455975e-03

Joint ci ratio: 3.725859e-02	ci left: 3.393559e-03	ci right 3.522706e-03	k: 11030	n:3190000
Cons ci ratio: 1.086991e-01	ci left: 3.853683e-04	ci right 4.299668e-04	k: 1299	n:3190000
KS ci ratio: 4.092721e-03	ci left: 2.228913e-01	ci right 2.238057e-01	k: 712481	n:3190000
MTTP   3190000 perm   4513 sec   (707 perm/sec)   p_kst 2.233483e-01   p_cons 4.072100e-04   p_joint 3.457680e-03

Joint ci ratio: 3.718276e-02	ci left: 3.396886e-03	ci right 3.525891e-03	k: 11075	n:3200000
Cons ci ratio: 1.084491e-01	ci left: 3.859881e-04	ci right 4.305491e-04	k: 1305	n:3200000
KS ci ratio: 4.086290e-03	ci left: 2.228947e-01	ci right 2.238077e-01	k: 714723	n:3200000
MTTP   3200000 perm   4539 sec   (705 perm/sec)   p_kst 2.233509e-01   p_cons 4.078125e-04   p_joint 3.460938e-03

Joint ci ratio: 3.673308e-02	ci left: 3.470258e-03	ci right 3.600422e-03	k: 11347	n:3210000
Cons ci ratio: 1.082834e-01	ci left: 3.859980e-04	ci right 4.304877e-04	k: 1309	n:3210000
KS ci ratio: 4.079633e-03	ci left: 2.229198e-01	ci right 2.238314e-01	k: 717035	n:3210000
MTTP   3210000 perm   4565 sec   (703 perm/sec)   p_kst 2.233754e-01   p_cons 4.077882e-04   p_joint 3.534891e-03

Joint ci ratio: 3.668789e-02	ci left: 3.468097e-03	ci right 3.598016e-03	k: 11375	n:3220000
Cons ci ratio: 1.081596e-01	ci left: 3.857057e-04	ci right 4.301076e-04	k: 1312	n:3220000
KS ci ratio: 4.073135e-03	ci left: 2.229340e-01	ci right 2.238442e-01	k: 719312	n:3220000
MTTP   3220000 perm   4592 sec   (701 perm/sec)   p_kst 2.233888e-01   p_cons 4.074534e-04   p_joint 3.532609e-03

Joint ci ratio: 3.662514e-02	ci left: 3.469323e-03	ci right 3.599062e-03	k: 11414	n:3230000
Cons ci ratio: 1.080363e-01	ci left: 3.854152e-04	ci right 4.297299e-04	k: 1315	n:3230000
KS ci ratio: 4.066890e-03	ci left: 2.229291e-01	ci right 2.238379e-01	k: 721528	n:3230000
MTTP   3230000 perm   4619 sec   (699 perm/sec)   p_kst 2.233833e-01   p_cons 4.071207e-04   p_joint 3.533746e-03

Joint ci ratio: 3.657874e-02	ci left: 3.467484e-03	ci right 3.596986e-03	k: 11443	n:3240000
Cons ci ratio: 1.078316e-01	ci left: 3.857272e-04	ci right 4.299885e-04	k: 1320	n:3240000
KS ci ratio: 4.060608e-03	ci left: 2.229299e-01	ci right 2.238373e-01	k: 723762	n:3240000
MTTP   3240000 perm   4646 sec   (697 perm/sec)   p_kst 2.233833e-01   p_cons 4.074074e-04   p_joint 3.531790e-03

Joint ci ratio: 3.652932e-02	ci left: 3.466266e-03	ci right 3.595544e-03	k: 11474	n:3250000
Cons ci ratio: 1.077501e-01	ci left: 3.851391e-04	ci right 4.292974e-04	k: 1322	n:3250000
KS ci ratio: 4.054245e-03	ci left: 2.229402e-01	ci right 2.238462e-01	k: 726027	n:3250000
MTTP   3250000 perm   4673 sec   (695 perm/sec)   p_kst 2.233929e-01   p_cons 4.067692e-04   p_joint 3.530462e-03

Joint ci ratio: 3.648328e-02	ci left: 3.464448e-03	ci right 3.593492e-03	k: 11503	n:3260000
Cons ci ratio: 1.077094e-01	ci left: 3.842562e-04	ci right 4.282956e-04	k: 1323	n:3260000
KS ci ratio: 4.047928e-03	ci left: 2.229489e-01	ci right 2.238535e-01	k: 728287	n:3260000
MTTP   3260000 perm   4701 sec   (693 perm/sec)   p_kst 2.234009e-01   p_cons 4.058282e-04   p_joint 3.528528e-03

Joint ci ratio: 3.670831e-02	ci left: 3.411430e-03	ci right 3.539299e-03	k: 11363	n:3270000
Cons ci ratio: 1.076282e-01	ci left: 3.836763e-04	ci right 4.276139e-04	k: 1325	n:3270000
KS ci ratio: 4.041823e-03	ci left: 2.229419e-01	ci right 2.238451e-01	k: 730496	n:3270000
MTTP   3270000 perm   4728 sec   (692 perm/sec)   p_kst 2.233933e-01   p_cons 4.051988e-04   p_joint 3.474924e-03

Joint ci ratio: 3.665030e-02	ci left: 3.411904e-03	ci right 3.539585e-03	k: 11399	n:3280000
Cons ci ratio: 1.074663e-01	ci left: 3.836932e-04	ci right 4.275625e-04	k: 1329	n:3280000
KS ci ratio: 4.035600e-03	ci left: 2.229475e-01	ci right 2.238493e-01	k: 732746	n:3280000
MTTP   3280000 perm   4755 sec   (690 perm/sec)   p_kst 2.233982e-01   p_cons 4.051829e-04   p_joint 3.475305e-03

Joint ci ratio: 3.659096e-02	ci left: 3.412677e-03	ci right 3.540175e-03	k: 11436	n:3290000
Cons ci ratio: 1.074259e-01	ci left: 3.828228e-04	ci right 4.265750e-04	k: 1330	n:3290000
KS ci ratio: 4.029769e-03	ci left: 2.229218e-01	ci right 2.238222e-01	k: 734893	n:3290000
MTTP   3290000 perm   4782 sec   (688 perm/sec)   p_kst 2.233717e-01   p_cons 4.042553e-04   p_joint 3.475988e-03

Joint ci ratio: 3.655108e-02	ci left: 3.409842e-03	ci right 3.537093e-03	k: 11461	n:3300000
Cons ci ratio: 1.073856e-01	ci left: 3.819576e-04	ci right 4.255936e-04	k: 1331	n:3300000
KS ci ratio: 4.023799e-03	ci left: 2.229104e-01	ci right 2.238095e-01	k: 737087	n:3300000
MTTP   3300000 perm   4809 sec   (686 perm/sec)   p_kst 2.233597e-01   p_cons 4.033333e-04   p_joint 3.473030e-03

Joint ci ratio: 3.648426e-02	ci left: 3.412113e-03	ci right 3.539211e-03	k: 11503	n:3310000
Cons ci ratio: 1.072649e-01	ci left: 3.816856e-04	ci right 4.252384e-04	k: 1334	n:3310000
KS ci ratio: 4.018036e-03	ci left: 2.228834e-01	ci right 2.237811e-01	k: 739229	n:3310000
MTTP   3310000 perm   4837 sec   (684 perm/sec)   p_kst 2.233320e-01   p_cons 4.030211e-04   p_joint 3.475227e-03

Joint ci ratio: 3.643998e-02	ci left: 3.410192e-03	ci right 3.537062e-03	k: 11531	n:3320000
Cons ci ratio: 1.069449e-01	ci left: 3.828811e-04	ci right 4.264318e-04	k: 1342	n:3320000
KS ci ratio: 4.011971e-03	ci left: 2.228849e-01	ci right 2.237812e-01	k: 741465	n:3320000
MTTP   3320000 perm   4864 sec   (682 perm/sec)   p_kst 2.233328e-01   p_cons 4.042169e-04   p_joint 3.473193e-03

Joint ci ratio: 3.638480e-02	ci left: 3.410366e-03	ci right 3.537046e-03	k: 11566	n:3330000
Cons ci ratio: 1.067860e-01	ci left: 3.829004e-04	ci right 4.263845e-04	k: 1346	n:3330000
KS ci ratio: 4.005871e-03	ci left: 2.228918e-01	ci right 2.237868e-01	k: 743719	n:3330000
MTTP   3330000 perm   4892 sec   (681 perm/sec)   p_kst 2.233390e-01   p_cons 4.042042e-04   p_joint 3.473273e-03

Joint ci ratio: 3.633931e-02	ci left: 3.408759e-03	ci right 3.535218e-03	k: 11595	n:3340000
Cons ci ratio: 1.065489e-01	ci left: 3.835025e-04	ci right 4.269522e-04	k: 1352	n:3340000
KS ci ratio: 3.999774e-03	ci left: 2.229007e-01	ci right 2.237944e-01	k: 745980	n:3340000
MTTP   3340000 perm   4920 sec   (679 perm/sec)   p_kst 2.233473e-01   p_cons 4.047904e-04   p_joint 3.471557e-03

Joint ci ratio: 3.629242e-02	ci left: 3.407458e-03	ci right 3.533701e-03	k: 11625	n:3350000
Cons ci ratio: 1.063526e-01	ci left: 3.838105e-04	ci right 4.272099e-04	k: 1357	n:3350000
KS ci ratio: 3.993774e-03	ci left: 2.229036e-01	ci right 2.237959e-01	k: 748221	n:3350000
MTTP   3350000 perm   4948 sec   (677 perm/sec)   p_kst 2.233496e-01   p_cons 4.050746e-04   p_joint 3.470149e-03

Joint ci ratio: 3.623324e-02	ci left: 3.408524e-03	ci right 3.534596e-03	k: 11663	n:3360000
Cons ci ratio: 1.060018e-01	ci left: 3.852756e-04	ci right 4.286881e-04	k: 1366	n:3360000
KS ci ratio: 3.987935e-03	ci left: 2.228949e-01	ci right 2.237859e-01	k: 750423	n:3360000
MTTP   3360000 perm   4976 sec   (675 perm/sec)   p_kst 2.233402e-01   p_cons 4.065476e-04   p_joint 3.471131e-03

Joint ci ratio: 3.618210e-02	ci left: 3.408113e-03	ci right 3.533989e-03	k: 11696	n:3370000
Cons ci ratio: 1.056930e-01	ci left: 3.864435e-04	ci right 4.298528e-04	k: 1374	n:3370000
KS ci ratio: 3.982124e-03	ci left: 2.228860e-01	ci right 2.237756e-01	k: 752624	n:3370000
MTTP   3370000 perm   5004 sec   (674 perm/sec)   p_kst 2.233306e-01   p_cons 4.077151e-04   p_joint 3.470623e-03

Joint ci ratio: 3.612654e-02	ci left: 3.408584e-03	ci right 3.534280e-03	k: 11732	n:3380000
Cons ci ratio: 1.055779e-01	ci left: 3.861642e-04	ci right 4.294920e-04	k: 1377	n:3380000
KS ci ratio: 3.976141e-03	ci left: 2.228943e-01	ci right 2.237826e-01	k: 754883	n:3380000
MTTP   3380000 perm   5032 sec   (672 perm/sec)   p_kst 2.233382e-01   p_cons 4.073964e-04   p_joint 3.471006e-03

Joint ci ratio: 3.608201e-02	ci left: 3.407007e-03	ci right 3.532487e-03	k: 11761	n:3390000
Cons ci ratio: 1.053107e-01	ci left: 3.870356e-04	ci right 4.303444e-04	k: 1384	n:3390000
KS ci ratio: 3.970233e-03	ci left: 2.228983e-01	ci right 2.237853e-01	k: 757128	n:3390000
MTTP   3390000 perm   5060 sec   (670 perm/sec)   p_kst 2.233416e-01   p_cons 4.082596e-04   p_joint 3.469322e-03

Joint ci ratio: 3.602997e-02	ci left: 3.406896e-03	ci right 3.532187e-03	k: 11795	n:3400000
Cons ci ratio: 1.050833e-01	ci left: 3.876155e-04	ci right 4.308898e-04	k: 1390	n:3400000
KS ci ratio: 3.964610e-03	ci left: 2.228798e-01	ci right 2.237654e-01	k: 759296	n:3400000
MTTP   3400000 perm   5088 sec   (668 perm/sec)   p_kst 2.233224e-01   p_cons 4.088235e-04   p_joint 3.469118e-03

Joint ci ratio: 3.596749e-02	ci left: 3.408821e-03	ci right 3.533960e-03	k: 11836	n:3410000
Cons ci ratio: 1.049325e-01	ci left: 3.876210e-04	ci right 4.308300e-04	k: 1394	n:3410000
KS ci ratio: 3.958948e-03	ci left: 2.228669e-01	ci right 2.237512e-01	k: 761483	n:3410000
MTTP   3410000 perm   5115 sec   (667 perm/sec)   p_kst 2.233088e-01   p_cons 4.087977e-04   p_joint 3.470968e-03

Joint ci ratio: 3.522010e-02	ci left: 3.545494e-03	ci right 3.672892e-03	k: 12342	n:3420000
Cons ci ratio: 1.048199e-01	ci left: 3.873418e-04	ci right 4.304705e-04	k: 1397	n:3420000
KS ci ratio: 3.953109e-03	ci left: 2.228716e-01	ci right 2.237546e-01	k: 763730	n:3420000
MTTP   3420000 perm   5143 sec   (665 perm/sec)   p_kst 2.233129e-01   p_cons 4.084795e-04   p_joint 3.608772e-03

Joint ci ratio: 3.476941e-02	ci left: 3.627927e-03	ci right 3.756586e-03	k: 12663	n:3430000
Cons ci ratio: 1.044098e-01	ci left: 3.893356e-04	ci right 4.325063e-04	k: 1408	n:3430000
KS ci ratio: 3.947253e-03	ci left: 2.228800e-01	ci right 2.237618e-01	k: 765990	n:3430000
MTTP   3430000 perm   5172 sec   (663 perm/sec)   p_kst 2.233207e-01   p_cons 4.104956e-04   p_joint 3.691837e-03

Joint ci ratio: 3.472422e-02	ci left: 3.626891e-03	ci right 3.755342e-03	k: 12696	n:3440000
Cons ci ratio: 1.042619e-01	ci left: 3.893363e-04	ci right 4.324422e-04	k: 1412	n:3440000
KS ci ratio: 3.941473e-03	ci left: 2.228841e-01	ci right 2.237646e-01	k: 768235	n:3440000
MTTP   3440000 perm   5200 sec   (662 perm/sec)   p_kst 2.233241e-01   p_cons 4.104651e-04   p_joint 3.690698e-03

Joint ci ratio: 3.468330e-02	ci left: 3.624998e-03	ci right 3.753228e-03	k: 12726	n:3450000
Cons ci ratio: 1.041147e-01	ci left: 3.893370e-04	ci right 4.323783e-04	k: 1416	n:3450000
KS ci ratio: 3.935915e-03	ci left: 2.228708e-01	ci right 2.237500e-01	k: 770420	n:3450000
MTTP   3450000 perm   5228 sec   (660 perm/sec)   p_kst 2.233101e-01   p_cons 4.104348e-04   p_joint 3.688696e-03

Joint ci ratio: 3.463300e-02	ci left: 3.625122e-03	ci right 3.753167e-03	k: 12763	n:3460000
Cons ci ratio: 1.038949e-01	ci left: 3.899008e-04	ci right 4.329079e-04	k: 1422	n:3460000
KS ci ratio: 3.930345e-03	ci left: 2.228607e-01	ci right 2.237386e-01	k: 772616	n:3460000
MTTP   3460000 perm   5257 sec   (658 perm/sec)   p_kst 2.232994e-01   p_cons 4.109827e-04   p_joint 3.688728e-03

Joint ci ratio: 3.459105e-02	ci left: 3.623532e-03	ci right 3.751362e-03	k: 12794	n:3470000
Cons ci ratio: 1.037128e-01	ci left: 3.901806e-04	ci right 4.331386e-04	k: 1427	n:3470000
KS ci ratio: 3.924870e-03	ci left: 2.228443e-01	ci right 2.237210e-01	k: 774790	n:3470000
MTTP   3470000 perm   5286 sec   (657 perm/sec)   p_kst 2.232824e-01   p_cons 4.112392e-04   p_joint 3.687032e-03

Joint ci ratio: 3.453574e-02	ci left: 3.624799e-03	ci right 3.752466e-03	k: 12835	n:3480000
Cons ci ratio: 1.035317e-01	ci left: 3.904590e-04	ci right 4.333680e-04	k: 1432	n:3480000
KS ci ratio: 3.919138e-03	ci left: 2.228528e-01	ci right 2.237281e-01	k: 777050	n:3480000
MTTP   3480000 perm   5314 sec   (655 perm/sec)   p_kst 2.232902e-01   p_cons 4.114943e-04   p_joint 3.688218e-03

Joint ci ratio: 3.448338e-02	ci left: 3.625491e-03	ci right 3.752985e-03	k: 12874	n:3490000
Cons ci ratio: 1.034235e-01	ci left: 3.901775e-04	ci right 4.330081e-04	k: 1435	n:3490000
KS ci ratio: 3.913322e-03	ci left: 2.228709e-01	ci right 2.237450e-01	k: 779344	n:3490000
MTTP   3490000 perm   5343 sec   (653 perm/sec)   p_kst 2.233077e-01   p_cons 4.111748e-04   p_joint 3.688825e-03

Joint ci ratio: 3.468832e-02	ci left: 3.572361e-03	ci right 3.698748e-03	k: 12723	n:3500000
Cons ci ratio: 1.031366e-01	ci left: 3.912894e-04	ci right 4.341156e-04	k: 1443	n:3500000
KS ci ratio: 3.907609e-03	ci left: 2.228821e-01	ci right 2.237550e-01	k: 781614	n:3500000
MTTP   3500000 perm   5372 sec   (652 perm/sec)   p_kst 2.233183e-01   p_cons 4.122857e-04   p_joint 3.635143e-03

Joint ci ratio: 3.391217e-02	ci left: 3.727991e-03	ci right 3.856875e-03	k: 13310	n:3510000
Cons ci ratio: 1.029940e-01	ci left: 3.912849e-04	ci right 4.340478e-04	k: 1447	n:3510000
KS ci ratio: 3.902132e-03	ci left: 2.228744e-01	ci right 2.237460e-01	k: 783818	n:3510000
MTTP   3510000 perm   5400 sec   (650 perm/sec)   p_kst 2.233100e-01   p_cons 4.122507e-04   p_joint 3.792023e-03

Joint ci ratio: 3.386260e-02	ci left: 3.728386e-03	ci right 3.857092e-03	k: 13349	n:3520000
Cons ci ratio: 1.028875e-01	ci left: 3.910036e-04	ci right 4.336889e-04	k: 1450	n:3520000
KS ci ratio: 3.896423e-03	ci left: 2.228894e-01	ci right 2.237599e-01	k: 786102	n:3520000
MTTP   3520000 perm   5429 sec   (648 perm/sec)   p_kst 2.233244e-01   p_cons 4.119318e-04   p_joint 3.792330e-03

Joint ci ratio: 3.382338e-02	ci left: 3.726531e-03	ci right 3.855021e-03	k: 13380	n:3530000
Cons ci ratio: 1.026754e-01	ci left: 3.915520e-04	ci right 4.342037e-04	k: 1456	n:3530000
KS ci ratio: 3.891040e-03	ci left: 2.228775e-01	ci right 2.237467e-01	k: 788291	n:3530000
MTTP   3530000 perm   5457 sec   (647 perm/sec)   p_kst 2.233119e-01   p_cons 4.124646e-04   p_joint 3.790368e-03

Joint ci ratio: 3.377546e-02	ci left: 3.726648e-03	ci right 3.854957e-03	k: 13418	n:3540000
Cons ci ratio: 1.024997e-01	ci left: 3.918221e-04	ci right 4.344258e-04	k: 1461	n:3540000
KS ci ratio: 3.885611e-03	ci left: 2.228719e-01	ci right 2.237398e-01	k: 790502	n:3540000
MTTP   3540000 perm   5485 sec   (645 perm/sec)   p_kst 2.233056e-01   p_cons 4.127119e-04   p_joint 3.790395e-03

Joint ci ratio: 3.373528e-02	ci left: 3.725088e-03	ci right 3.853188e-03	k: 13450	n:3550000
Cons ci ratio: 1.022900e-01	ci left: 3.923652e-04	ci right 4.349355e-04	k: 1467	n:3550000
KS ci ratio: 3.880298e-03	ci left: 2.228579e-01	ci right 2.237246e-01	k: 792683	n:3550000
MTTP   3550000 perm   5513 sec   (644 perm/sec)   p_kst 2.232910e-01   p_cons 4.132394e-04   p_joint 3.788732e-03

Joint ci ratio: 3.349141e-02	ci left: 3.769220e-03	ci right 3.897882e-03	k: 13646	n:3560000
Cons ci ratio: 1.019778e-01	ci left: 3.937266e-04	ci right 4.363064e-04	k: 1476	n:3560000
KS ci ratio: 3.874700e-03	ci left: 2.228714e-01	ci right 2.237369e-01	k: 794962	n:3560000
MTTP   3560000 perm   5541 sec   (642 perm/sec)   p_kst 2.233039e-01   p_cons 4.146067e-04   p_joint 3.833146e-03

Joint ci ratio: 2.173601e-02	ci left: 8.930153e-03	ci right 9.126667e-03	k: 32230	n:3570000
Cons ci ratio: 7.957609e-02	ci left: 6.522365e-04	ci right 7.065619e-04	k: 2424	n:3570000
KS ci ratio: 3.869279e-03	ci left: 2.228712e-01	ci right 2.237354e-01	k: 797192	n:3570000
MTTP   3570000 perm   5570 sec   (641 perm/sec)   p_kst 2.233031e-01   p_cons 6.789916e-04   p_joint 9.028011e-03

Outputting figure to mutsig2_images.part000000000109/MTTP.4_2757_3570000_0.2233_0.00067899_0.009028.png
                gene_name: MTTP
               theta_stop: 0.080 
                    nperm: 3570000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.00068 
      ci_cons_bounds_left: 0.00065 
     ci_cons_bounds_right: 0.00071 
                  p_joint: 0.0090 
     ci_joint_bounds_left: 0.0089 
    ci_joint_bounds_right: 0.0091 

Current progress: 53 percent done.
MST1R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.346599e-02	ci left: 8.883137e-01	ci right 9.004554e-01	k: 8945	n:10000
KS ci ratio: 1.325114e-02	ci left: 8.913891e-01	ci right 9.033783e-01	k: 8975	n:10000
MST1R   10000 perm   2 sec   (4985 perm/sec)   p_kst 8.975000e-01   p_cons 8.945000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000109/MST1R.3_4283_10000_0.8975_0.8945_1.png
                gene_name: MST1R
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 55 percent done.
MSTN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.117017e-02	ci left: 7.658760e-01	ci right 7.823640e-01	k: 7742	n:10000
KS ci ratio: 2.361561e-02	ci left: 7.249193e-01	ci right 7.423444e-01	k: 7337	n:10000
MSTN   10000 perm   2 sec   (6375 perm/sec)   p_kst 7.337000e-01   p_cons 7.742000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000109/MSTN.3_1140_10000_0.7337_0.7742_1.png
                gene_name: MSTN
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 58 percent done.
MTERFD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.552514e-02	ci left: 1.661239e-01	ci right 1.810667e-01	k: 1735	n:10000
Cons ci ratio: 1.994303e-02	ci left: 7.863438e-01	ci right 8.022844e-01	k: 7944	n:10000
KS ci ratio: 1.317679e-01	ci left: 7.591905e-02	ci right 8.672633e-02	k: 812	n:10000
MTERFD1   10000 perm   2 sec   (6207 perm/sec)   p_kst 8.120000e-02   p_cons 7.944000e-01   p_joint 1.735000e-01

Joint ci ratio: 4.606193e-02	ci left: 2.596870e-01	ci right 2.719811e-01	k: 5316	n:20000
Cons ci ratio: 1.417713e-02	ci left: 7.869641e-01	ci right 7.982507e-01	k: 15853	n:20000
KS ci ratio: 9.345775e-02	ci left: 7.705916e-02	ci right 8.466322e-02	k: 1616	n:20000
MTERFD1   20000 perm   4 sec   (5415 perm/sec)   p_kst 8.080000e-02   p_cons 7.926500e-01   p_joint 2.658000e-01

Outputting figure to mutsig2_images.part000000000109/MTERFD1.3_1282_20000_0.0808_0.79265_0.2658.png
                gene_name: MTERFD1
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.081 
        ci_ks_bounds_left: 0.077 
       ci_ks_bounds_right: 0.085 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 61 percent done.
MTERFD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.641285e-03	ci left: 9.768488e-01	ci right 9.824669e-01	k: 9798	n:10000
Cons ci ratio: 3.073150e-02	ci left: 6.096996e-01	ci right 6.288309e-01	k: 6193	n:10000
KS ci ratio: 3.589935e-02	ci left: 5.339763e-01	ci right 5.535982e-01	k: 5438	n:10000
MTERFD2   10000 perm   2 sec   (6246 perm/sec)   p_kst 5.438000e-01   p_cons 6.193000e-01   p_joint 9.798000e-01

Outputting figure to mutsig2_images.part000000000109/MTERFD2.3_1162_10000_0.5438_0.6193_0.9798.png
                gene_name: MTERFD2
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 63 percent done.
MST1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.901113e-02	ci left: 1.287509e-01	ci right 1.422622e-01	k: 1354	n:10000
Cons ci ratio: 1.459254e-01	ci left: 6.236946e-02	ci right 7.228440e-02	k: 672	n:10000
KS ci ratio: 4.069629e-02	ci left: 4.713638e-01	ci right 4.910472e-01	k: 4812	n:10000
MST1   10000 perm   2 sec   (6077 perm/sec)   p_kst 4.812000e-01   p_cons 6.720000e-02   p_joint 1.354000e-01

Joint ci ratio: 7.392778e-02	ci left: 1.186750e-01	ci right 1.278348e-01	k: 2464	n:20000
Cons ci ratio: 1.048247e-01	ci left: 6.191444e-02	ci right 6.881258e-02	k: 1306	n:20000
KS ci ratio: 2.883947e-02	ci left: 4.732043e-01	ci right 4.871015e-01	k: 9603	n:20000
MST1   20000 perm   4 sec   (5368 perm/sec)   p_kst 4.801500e-01   p_cons 6.530000e-02   p_joint 1.232000e-01

Joint ci ratio: 5.917698e-02	ci left: 1.238111e-01	ci right 1.313945e-01	k: 3827	n:30000
Cons ci ratio: 8.562464e-02	ci left: 6.249723e-02	ci right 6.812065e-02	k: 1958	n:30000
KS ci ratio: 2.355660e-02	ci left: 4.742988e-01	ci right 4.856384e-01	k: 14399	n:30000
MST1   30000 perm   6 sec   (5115 perm/sec)   p_kst 4.799667e-01   p_cons 6.526667e-02   p_joint 1.275667e-01

Outputting figure to mutsig2_images.part000000000109/MST1.2_2250_30000_0.47997_0.065267_0.12757.png
                gene_name: MST1
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.065 
      ci_cons_bounds_left: 0.062 
     ci_cons_bounds_right: 0.068 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 66 percent done.
MST4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.616684e-02	ci left: 2.013622e-01	ci right 2.174074e-01	k: 2093	n:10000
KS ci ratio: 1.359396e-02	ci left: 8.864693e-01	ci right 8.987010e-01	k: 8927	n:10000
MST4   10000 perm   2 sec   (6419 perm/sec)   p_kst 8.927000e-01   p_cons 2.093000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000109/MST4.2_1295_10000_0.8927_0.2093_1.png
                gene_name: MST4
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
MTA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.446792e-02	ci left: 4.274473e-01	ci right 4.469893e-01	k: 4372	n:10000
KS ci ratio: 3.321031e-02	ci left: 5.723604e-01	ci right 5.917917e-01	k: 5821	n:10000
MTA3   10000 perm   2 sec   (6319 perm/sec)   p_kst 5.821000e-01   p_cons 4.372000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000109/MTA3.2_1604_10000_0.5821_0.4372_1.png
                gene_name: MTA3
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
MTBP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.510603e-02	ci left: 4.204677e-01	ci right 4.399730e-01	k: 4302	n:10000
KS ci ratio: 4.086781e-02	ci left: 4.692660e-01	ci right 4.889461e-01	k: 4791	n:10000
MTBP   10000 perm   2 sec   (5890 perm/sec)   p_kst 4.791000e-01   p_cons 4.302000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000109/MTBP.2_2803_10000_0.4791_0.4302_1.png
                gene_name: MTBP
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 74 percent done.
MTDH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.408683e-01	ci left: 2.268733e-02	ci right 2.899301e-02	k: 257	n:10000
Cons ci ratio: 2.554752e-01	ci left: 2.005779e-02	ci right 2.602453e-02	k: 229	n:10000
KS ci ratio: 4.563429e-02	ci left: 4.147857e-01	ci right 4.342583e-01	k: 4245	n:10000
MTDH   10000 perm   2 sec   (6058 perm/sec)   p_kst 4.245000e-01   p_cons 2.290000e-02   p_joint 2.570000e-02

Joint ci ratio: 1.381450e-01	ci left: 3.602079e-02	ci right 4.141438e-02	k: 773	n:20000
Cons ci ratio: 1.769473e-01	ci left: 2.182763e-02	ci right 2.611230e-02	k: 478	n:20000
KS ci ratio: 3.254684e-02	ci left: 4.134960e-01	ci right 4.272272e-01	k: 8407	n:20000
MTDH   20000 perm   4 sec   (5376 perm/sec)   p_kst 4.203500e-01   p_cons 2.390000e-02   p_joint 3.865000e-02

Joint ci ratio: 2.783654e-01	ci left: 5.653057e-03	ci right 7.511107e-03	k: 196	n:30000
Cons ci ratio: 2.444304e-01	ci left: 7.461014e-03	ci right 9.569162e-03	k: 254	n:30000
KS ci ratio: 2.662888e-02	ci left: 4.137742e-01	ci right 4.249748e-01	k: 12581	n:30000
MTDH   30000 perm   6 sec   (5149 perm/sec)   p_kst 4.193667e-01   p_cons 8.466667e-03   p_joint 6.533333e-03

Joint ci ratio: 8.316032e-02	ci left: 5.043239e-02	ci right 5.483284e-02	k: 2104	n:40000
Cons ci ratio: 1.230967e-01	ci left: 2.320106e-02	ci right 2.626847e-02	k: 988	n:40000
KS ci ratio: 2.306243e-02	ci left: 4.145078e-01	ci right 4.242040e-01	k: 16774	n:40000
MTDH   40000 perm   8 sec   (4947 perm/sec)   p_kst 4.193500e-01   p_cons 2.470000e-02   p_joint 5.260000e-02

Joint ci ratio: 2.248862e-01	ci left: 5.360775e-03	ci right 6.737522e-03	k: 301	n:50000
Cons ci ratio: 1.916231e-01	ci left: 7.504373e-03	ci right 9.113497e-03	k: 414	n:50000
KS ci ratio: 2.063506e-02	ci left: 4.148498e-01	ci right 4.235196e-01	k: 20959	n:50000
MTDH   50000 perm   10 sec   (4844 perm/sec)   p_kst 4.191800e-01   p_cons 8.280000e-03   p_joint 6.020000e-03

Joint ci ratio: 8.476519e-02	ci left: 3.295591e-02	ci right 3.588935e-02	k: 2064	n:60000
Cons ci ratio: 1.007699e-01	ci left: 2.335899e-02	ci right 2.585395e-02	k: 1475	n:60000
KS ci ratio: 1.886553e-02	ci left: 4.144985e-01	ci right 4.224094e-01	k: 25107	n:60000
MTDH   60000 perm   13 sec   (4761 perm/sec)   p_kst 4.184500e-01   p_cons 2.458333e-02   p_joint 3.440000e-02

Joint ci ratio: 7.824506e-02	ci left: 3.325826e-02	ci right 3.598049e-02	k: 2422	n:70000
Cons ci ratio: 9.296335e-02	ci left: 2.361865e-02	ci right 2.593526e-02	k: 1733	n:70000
KS ci ratio: 1.748232e-02	ci left: 4.143425e-01	ci right 4.216643e-01	k: 29260	n:70000
MTDH   70000 perm   15 sec   (4681 perm/sec)   p_kst 4.180000e-01   p_cons 2.475714e-02   p_joint 3.460000e-02

Outputting figure to mutsig2_images.part000000000109/MTDH.2_1797_70000_0.418_0.024757_0.0346.png
                gene_name: MTDH
               theta_stop: 0.093 
                    nperm: 70000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.025 
      ci_cons_bounds_left: 0.024 
     ci_cons_bounds_right: 0.026 
                  p_joint: 0.035 
     ci_joint_bounds_left: 0.033 
    ci_joint_bounds_right: 0.036 

Current progress: 76 percent done.
MTF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.468708e-02	ci left: 7.070498e-01	ci right 7.248243e-01	k: 7160	n:10000
Cons ci ratio: 4.052554e-02	ci left: 4.734617e-01	ci right 4.931480e-01	k: 4833	n:10000
KS ci ratio: 4.272236e-02	ci left: 4.472002e-01	ci right 4.668248e-01	k: 4570	n:10000
MTF1   10000 perm   2 sec   (5863 perm/sec)   p_kst 4.570000e-01   p_cons 4.833000e-01   p_joint 7.160000e-01

Outputting figure to mutsig2_images.part000000000109/MTF1.2_2302_10000_0.457_0.4833_0.716.png
                gene_name: MTF1
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.72 

Current progress: 79 percent done.
MTF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.080128e-02	ci left: 9.243065e-01	ci right 9.344416e-01	k: 9295	n:10000
Cons ci ratio: 4.444821e-03	ci left: 9.850162e-01	ci right 9.894933e-01	k: 9874	n:10000
KS ci ratio: 5.211988e-02	ci left: 3.517769e-01	ci right 3.707040e-01	k: 3612	n:10000
MTF2   10000 perm   2 sec   (6074 perm/sec)   p_kst 3.612000e-01   p_cons 9.874000e-01   p_joint 9.295000e-01

Outputting figure to mutsig2_images.part000000000109/MTF2.2_1842_10000_0.3612_0.9874_0.9295.png
                gene_name: MTF2
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 82 percent done.
MTHFD1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.391342e-03	ci left: 9.853418e-01	ci right 9.897674e-01	k: 9877	n:10000
Cons ci ratio: 1.435388e-01	ci left: 6.439839e-02	ci right 7.445420e-02	k: 693	n:10000
KS ci ratio: 9.926549e-02	ci left: 1.281636e-01	ci right 1.416499e-01	k: 1348	n:10000
MTHFD1L   10000 perm   2 sec   (5548 perm/sec)   p_kst 1.348000e-01   p_cons 6.930000e-02   p_joint 9.877000e-01

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 9.921401e-02	ci left: 6.879694e-02	ci right 7.602796e-02	k: 1447	n:20000
KS ci ratio: 7.081575e-02	ci left: 1.281254e-01	ci right 1.375816e-01	k: 2656	n:20000
MTHFD1L   20000 perm   4 sec   (4972 perm/sec)   p_kst 1.328000e-01   p_cons 7.235000e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000109/MTHFD1L.2_3045_20000_0.1328_0.07235_1.png
                gene_name: MTHFD1L
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.072 
      ci_cons_bounds_left: 0.069 
     ci_cons_bounds_right: 0.076 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
MTHFR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.194744e-02	ci left: 4.562838e-01	ci right 4.759360e-01	k: 4661	n:10000
Cons ci ratio: 9.215698e-03	ci left: 9.431544e-01	ci right 9.519826e-01	k: 9477	n:10000
KS ci ratio: 6.829591e-02	ci left: 2.392637e-01	ci right 2.562834e-01	k: 2477	n:10000
MTHFR   10000 perm   2 sec   (6099 perm/sec)   p_kst 2.477000e-01   p_cons 9.477000e-01   p_joint 4.661000e-01

Outputting figure to mutsig2_images.part000000000109/MTHFR.2_2015_10000_0.2477_0.9477_0.4661.png
                gene_name: MTHFR
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 87 percent done.
MTMR14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.527287e-01	ci left: 5.706232e-02	ci right 6.659491e-02	k: 617	n:10000
Cons ci ratio: 1.251928e-02	ci left: 9.016521e-01	ci right 9.131093e-01	k: 9075	n:10000
KS ci ratio: 2.408683e-01	ci left: 2.268733e-02	ci right 2.899301e-02	k: 257	n:10000
MTMR14   10000 perm   2 sec   (5876 perm/sec)   p_kst 2.570000e-02   p_cons 9.075000e-01   p_joint 6.170000e-02

Joint ci ratio: 1.534369e-02	ci left: 7.595143e-01	ci right 7.713084e-01	k: 15309	n:20000
Cons ci ratio: 8.966436e-03	ci left: 9.011579e-01	ci right 9.093238e-01	k: 18106	n:20000
KS ci ratio: 1.640659e-01	ci left: 2.546943e-02	ci right 3.006924e-02	k: 554	n:20000
MTMR14   20000 perm   4 sec   (5305 perm/sec)   p_kst 2.770000e-02   p_cons 9.053000e-01   p_joint 7.654500e-01

Joint ci ratio: 1.205723e-01	ci left: 3.197780e-02	ci right 3.611308e-02	k: 1020	n:30000
Cons ci ratio: 7.320671e-03	ci left: 9.019307e-01	ci right 9.085906e-01	k: 27159	n:30000
KS ci ratio: 1.338363e-01	ci left: 2.593660e-02	ci right 2.968892e-02	k: 833	n:30000
MTMR14   30000 perm   6 sec   (5013 perm/sec)   p_kst 2.776667e-02   p_cons 9.053000e-01   p_joint 3.400000e-02

Joint ci ratio: 1.033369e-01	ci left: 3.292779e-02	ci right 3.654016e-02	k: 1388	n:40000
Cons ci ratio: 6.317513e-03	ci left: 9.029967e-01	ci right 9.087442e-01	k: 36236	n:40000
KS ci ratio: 1.146918e-01	ci left: 2.674533e-02	ci right 3.002362e-02	k: 1134	n:40000
MTMR14   40000 perm   8 sec   (4856 perm/sec)   p_kst 2.835000e-02   p_cons 9.059000e-01   p_joint 3.470000e-02

Joint ci ratio: 9.199615e-02	ci left: 3.342573e-02	ci right 3.666854e-02	k: 1751	n:50000
Cons ci ratio: 5.637199e-03	ci left: 9.037121e-01	ci right 9.088406e-01	k: 45315	n:50000
KS ci ratio: 1.019842e-01	ci left: 2.723445e-02	ci right 3.018061e-02	k: 1434	n:50000
MTMR14   50000 perm   10 sec   (4775 perm/sec)   p_kst 2.868000e-02   p_cons 9.063000e-01   p_joint 3.502000e-02

Joint ci ratio: 8.374162e-02	ci left: 3.375595e-02	ci right 3.672256e-02	k: 2113	n:60000
Cons ci ratio: 5.147494e-03	ci left: 9.038897e-01	ci right 9.085709e-01	k: 54375	n:60000
KS ci ratio: 9.307070e-02	ci left: 2.737855e-02	ci right 3.006729e-02	k: 1722	n:60000
MTMR14   60000 perm   13 sec   (4691 perm/sec)   p_kst 2.870000e-02   p_cons 9.062500e-01   p_joint 3.521667e-02

Outputting figure to mutsig2_images.part000000000109/MTMR14.2_2029_60000_0.0287_0.90625_0.035217.png
                gene_name: MTMR14
               theta_stop: 0.093 
                    nperm: 60000 
                     p_ks: 0.029 
        ci_ks_bounds_left: 0.027 
       ci_ks_bounds_right: 0.030 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.035 
     ci_joint_bounds_left: 0.034 
    ci_joint_bounds_right: 0.037 

Current progress: 89 percent done.
MTMR15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.298773e-02	ci left: 7.354271e-01	ci right 7.526306e-01	k: 7441	n:10000
Cons ci ratio: 6.249646e-03	ci left: 9.720660e-01	ci right 9.782530e-01	k: 9753	n:10000
KS ci ratio: 5.872968e-02	ci left: 2.990576e-01	ci right 3.172542e-01	k: 3081	n:10000
MTMR15   10000 perm   2 sec   (5328 perm/sec)   p_kst 3.081000e-01   p_cons 9.753000e-01   p_joint 7.441000e-01

Outputting figure to mutsig2_images.part000000000109/MTMR15.2_3131_10000_0.3081_0.9753_0.7441.png
                gene_name: MTMR15
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.75 

Current progress: 92 percent done.
MTMR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.387201e-02	ci left: 2.647803e-01	ci right 2.823518e-01	k: 2735	n:10000
KS ci ratio: 2.937187e-02	ci left: 6.309046e-01	ci right 6.498135e-01	k: 6404	n:10000
MTMR2   10000 perm   2 sec   (5621 perm/sec)   p_kst 6.404000e-01   p_cons 2.735000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000109/MTMR2.2_1992_10000_0.6404_0.2735_1.png
                gene_name: MTMR2
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
MTUS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.540060e-02	ci left: 2.555781e-01	ci right 2.729595e-01	k: 2642	n:10000
Cons ci ratio: 6.847959e-02	ci left: 2.382755e-01	ci right 2.552722e-01	k: 2467	n:10000
KS ci ratio: 9.205164e-02	ci left: 1.463885e-01	ci right 1.606140e-01	k: 1534	n:10000
MTUS1   10000 perm   2 sec   (5067 perm/sec)   p_kst 1.534000e-01   p_cons 2.467000e-01   p_joint 2.642000e-01

Outputting figure to mutsig2_images.part000000000109/MTUS1.2_4188_10000_0.1534_0.2467_0.2642.png
                gene_name: MTUS1
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 97 percent done.
MTX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.767870e-02	ci left: 2.426241e-01	ci right 2.597210e-01	k: 2511	n:10000
Cons ci ratio: 2.302997e-02	ci left: 7.347196e-01	ci right 7.519384e-01	k: 7434	n:10000
KS ci ratio: 1.719499e-01	ci left: 4.513859e-02	ci right 5.372632e-02	k: 493	n:10000
MTX1   10000 perm   2 sec   (6432 perm/sec)   p_kst 4.930000e-02   p_cons 7.434000e-01   p_joint 2.511000e-01

Joint ci ratio: 6.208404e-02	ci left: 1.610153e-01	ci right 1.713820e-01	k: 3323	n:20000
Cons ci ratio: 1.564688e-02	ci left: 7.523549e-01	ci right 7.642699e-01	k: 15167	n:20000
KS ci ratio: 1.225055e-01	ci left: 4.570923e-02	ci right 5.172285e-02	k: 973	n:20000
MTX1   20000 perm   4 sec   (5669 perm/sec)   p_kst 4.865000e-02   p_cons 7.583500e-01   p_joint 1.661500e-01

Joint ci ratio: 6.522218e-02	ci left: 1.039507e-01	ci right 1.109922e-01	k: 3223	n:30000
Cons ci ratio: 1.283314e-02	ci left: 7.518033e-01	ci right 7.615470e-01	k: 22701	n:30000
KS ci ratio: 9.988242e-02	ci left: 4.638913e-02	ci right 5.129872e-02	k: 1464	n:30000
MTX1   30000 perm   6 sec   (5098 perm/sec)   p_kst 4.880000e-02   p_cons 7.567000e-01   p_joint 1.074333e-01

Outputting figure to mutsig2_images.part000000000109/MTX1.2_1433_30000_0.0488_0.7567_0.10743.png
                gene_name: MTX1
               theta_stop: 0.100 
                    nperm: 30000 
                     p_ks: 0.049 
        ci_ks_bounds_left: 0.046 
       ci_ks_bounds_right: 0.051 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000109
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 109 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1707>
Subject: Job 8004291: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1707>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000110> was used as the working directory.
Started at Sun Nov 11 15:08:53 2012
Results reported at Sun Nov 11 15:21:09 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000110.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000110.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 110  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000110.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    780.92 sec.
    Max Memory :      4682 MB
    Max Swap   :      7074 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
110
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 110
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 110: processing genes 9862 - 9952
Calculating significance of each gene.
Using projection method.
9862	MUC2	9.996513e-01
9863	MUC20	8.656858e-02
9864	MUC21	1
9865	MUC4	7.286554e-01
9866	MUC5B	7.987850e-01
9867	MUC6	3.641989e-01
9868	MUC7	3.781652e-01
9869	MUCL1	1
9870	MUDENG	7.049454e-01
9871	MUL1	6.126313e-01
9872	MUM1	9.067934e-01
9873	MUM1L1	4.825685e-02
9874	MURC	3.649504e-02
9875	MUS81	8.923946e-01
9876	MUSK	1
9877	MUSTN1	1
9878	MUT	4.221492e-01
9879	MUTED	1
9880	MUTYH	7.157005e-01
9881	MVD	4.168662e-01
9882	MVK	1
9883	MVP	9.282229e-01
9884	MX1	1
9885	MX2	7.752640e-01
9886	MXD1	1
9887	MXD3	1
9888	MXD4	1
9889	MXI1	1
9890	MXRA5	9.760766e-01
9891	MXRA7	3.172104e-01
9892	MXRA8	5.957849e-01
9893	MYADM	2.171845e-01
9894	MYB	1.891163e-01
9895	MYBBP1A	9.640720e-01
9896	MYBL1	1.866770e-01
9897	MYBL2	1
9898	MYBPC1	5.107787e-01
9899	MYBPC2	1
9900	MYBPC3	4.151024e-01
9901	MYBPH	5.074539e-01
9902	MYBPHL	1
9903	MYC	8.934618e-01
9904	MYCBP	1
9905	MYCBP2	9.999988e-01
9906	MYCBPAP	9.168384e-01
9907	MYCL1	5.157969e-01
9908	MYCN	1
9909	MYCT1	1
9910	MYD88	1
9911	MYEF2	2.722547e-01
9912	MYEOV	3.819147e-03
9913	MYEOV2	6.424515e-01
9914	MYF5	7.814844e-02
9915	MYF6	1
9916	MYH1	2.072821e-02
9917	MYH10	9.994557e-01
9918	MYH11	9.997989e-01
9919	MYH13	9.938127e-01
9920	MYH14	8.720285e-01
9921	MYH15	4.058920e-01
9922	MYH2	5.734417e-02
9923	MYH3	1
9924	MYH4	9.763340e-01
9925	MYH6	9.957290e-01
9926	MYH7	9.836823e-01
9927	MYH7B	6.619543e-01
9928	MYH8	1.270711e-03
9929	MYH9	4.752643e-01
9930	MYL1	3.270375e-02
9931	MYL10	1
9932	MYL12A	1
9933	MYL12B	3.386999e-01
9934	MYL2	1.694739e-01
9935	MYL3	1.950960e-01
9936	MYL4	4.908490e-01
9937	MYL5	1
9938	MYL6	4.327062e-01
9939	MYL6B	1
9940	MYL7	1
9941	MYL9	4.299675e-01
9942	MYLIP	4.678156e-01
9943	MYLK	5.768509e-01
9944	MYLK2	3.828667e-01
9945	MYLK3	1
9946	MYLK4	6.360467e-01
9947	MYLPF	4.906676e-01
9948	MYNN	6.110265e-01
9949	MYO10	9.675543e-01
9950	MYO15A	9.986165e-01
9951	MYO16	9.848066e-01
9952	MYO18A	9.321594e-01
Done

Running MutSig 2:
Scatter job 110: processing genes 9862 - 9952
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
MUC5B
Processing conservation and coverage...
57% 
Processing mutations... 
Skipping 3 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.052060e-01	ci left: 1.154507e-01	ci right 1.283705e-01	k: 1218	n:10000
Cons ci ratio: 1.678445e-02	ci left: 8.378583e-01	ci right 8.521401e-01	k: 8451	n:10000
KS ci ratio: 1.527287e-01	ci left: 5.706232e-02	ci right 6.659491e-02	k: 617	n:10000
MUC5B   10000 perm   5 sec   (2199 perm/sec)   p_kst 6.170000e-02   p_cons 8.451000e-01   p_joint 1.218000e-01

Joint ci ratio: 7.444539e-02	ci left: 1.171992e-01	ci right 1.263111e-01	k: 2434	n:20000
Cons ci ratio: 1.177468e-02	ci left: 8.420875e-01	ci right 8.521114e-01	k: 16943	n:20000
KS ci ratio: 1.078120e-01	ci left: 5.864794e-02	ci right 6.538009e-02	k: 1239	n:20000
MUC5B   20000 perm   11 sec   (1749 perm/sec)   p_kst 6.195000e-02   p_cons 8.471500e-01   p_joint 1.217000e-01

Joint ci ratio: 5.631891e-02	ci left: 1.351037e-01	ci right 1.429663e-01	k: 4170	n:30000
Cons ci ratio: 9.506548e-03	ci left: 8.459426e-01	ci right 8.540562e-01	k: 25501	n:30000
KS ci ratio: 8.730545e-02	ci left: 6.021111e-02	ci right 6.574056e-02	k: 1888	n:30000
MUC5B   30000 perm   17 sec   (1813 perm/sec)   p_kst 6.293333e-02   p_cons 8.500333e-01   p_joint 1.390000e-01

Outputting figure to mutsig2_images.part000000000110/MUC5B.36_17494_30000_0.062933_0.85003_0.139.png
                gene_name: MUC5B
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.063 
        ci_ks_bounds_left: 0.060 
       ci_ks_bounds_right: 0.066 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.14 

Current progress: 2 percent done.
MYH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.632827e-02	ci left: 5.280685e-01	ci right 5.477094e-01	k: 5379	n:10000
Cons ci ratio: 6.538379e-02	ci left: 2.556770e-01	ci right 2.730605e-01	k: 2643	n:10000
KS ci ratio: 2.649463e-02	ci left: 6.772033e-01	ci right 6.954880e-01	k: 6864	n:10000
MYH2   10000 perm   3 sec   (3497 perm/sec)   p_kst 6.864000e-01   p_cons 2.643000e-01   p_joint 5.379000e-01

Outputting figure to mutsig2_images.part000000000110/MYH2.31_5978_10000_0.6864_0.2643_0.5379.png
                gene_name: MYH2
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 4 percent done.
MYH8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.675881e-02	ci left: 8.382657e-01	ci right 8.525325e-01	k: 8455	n:10000
Cons ci ratio: 1.529596e-02	ci left: 8.611064e-01	ci right 8.744786e-01	k: 8679	n:10000
KS ci ratio: 2.081881e-02	ci left: 7.717500e-01	ci right 7.880866e-01	k: 7800	n:10000
MYH8   10000 perm   3 sec   (3708 perm/sec)   p_kst 7.800000e-01   p_cons 8.679000e-01   p_joint 8.455000e-01

Outputting figure to mutsig2_images.part000000000110/MYH8.24_5966_10000_0.78_0.8679_0.8455.png
                gene_name: MYH8
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 6 percent done.
MYH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.780619e-02	ci left: 3.058014e-01	ci right 3.241065e-01	k: 3149	n:10000
Cons ci ratio: 2.796419e-02	ci left: 6.533372e-01	ci right 6.719680e-01	k: 6627	n:10000
KS ci ratio: 8.464158e-02	ci left: 1.690728e-01	ci right 1.841161e-01	k: 1765	n:10000
MYH1   10000 perm   3 sec   (3797 perm/sec)   p_kst 1.765000e-01   p_cons 6.627000e-01   p_joint 3.149000e-01

Outputting figure to mutsig2_images.part000000000110/MYH1.23_5972_10000_0.1765_0.6627_0.3149.png
                gene_name: MYH1
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 8 percent done.
MYH4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.424392e-01	ci left: 6.536500e-02	ci right 7.548697e-02	k: 703	n:10000
Cons ci ratio: 2.925720e-02	ci left: 6.327145e-01	ci right 6.516026e-01	k: 6422	n:10000
KS ci ratio: 2.240477e-01	ci left: 2.636581e-02	ci right 3.311184e-02	k: 296	n:10000
MYH4   10000 perm   3 sec   (3746 perm/sec)   p_kst 2.960000e-02   p_cons 6.422000e-01   p_joint 7.030000e-02

Joint ci ratio: 1.007989e-01	ci left: 6.674574e-02	ci right 7.387980e-02	k: 1405	n:20000
Cons ci ratio: 2.093937e-02	ci left: 6.299398e-01	ci right 6.433204e-01	k: 12733	n:20000
KS ci ratio: 1.558784e-01	ci left: 2.825647e-02	ci right 3.308125e-02	k: 612	n:20000
MYH4   20000 perm   6 sec   (3489 perm/sec)   p_kst 3.060000e-02   p_cons 6.366500e-01   p_joint 7.025000e-02

Joint ci ratio: 7.631701e-02	ci left: 7.774015e-02	ci right 8.394131e-02	k: 2424	n:30000
Cons ci ratio: 1.715943e-02	ci left: 6.294892e-01	ci right 6.404179e-01	k: 19049	n:30000
KS ci ratio: 1.273109e-01	ci left: 2.867995e-02	ci right 3.261164e-02	k: 918	n:30000
MYH4   30000 perm   9 sec   (3371 perm/sec)   p_kst 3.060000e-02   p_cons 6.349667e-01   p_joint 8.080000e-02

Joint ci ratio: 7.825685e-02	ci left: 5.671050e-02	ci right 6.135378e-02	k: 2360	n:40000
Cons ci ratio: 1.352875e-02	ci left: 6.726932e-01	ci right 6.818810e-01	k: 27092	n:40000
KS ci ratio: 1.098548e-01	ci left: 2.915279e-02	ci right 3.256576e-02	k: 1233	n:40000
MYH4   40000 perm   12 sec   (3295 perm/sec)   p_kst 3.082500e-02   p_cons 6.773000e-01   p_joint 5.900000e-02

Joint ci ratio: 7.115878e-02	ci left: 5.518025e-02	ci right 5.927134e-02	k: 2860	n:50000
Cons ci ratio: 1.208225e-02	ci left: 6.738441e-01	ci right 6.820552e-01	k: 33898	n:50000
KS ci ratio: 9.837254e-02	ci left: 2.926383e-02	ci right 3.231097e-02	k: 1538	n:50000
MYH4   50000 perm   15 sec   (3232 perm/sec)   p_kst 3.076000e-02   p_cons 6.779600e-01   p_joint 5.720000e-02

Outputting figure to mutsig2_images.part000000000110/MYH4.21_5972_50000_0.03076_0.67796_0.0572.png
                gene_name: MYH4
               theta_stop: 0.098 
                    nperm: 50000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.057 
     ci_joint_bounds_left: 0.055 
    ci_joint_bounds_right: 0.059 

Current progress: 9 percent done.
MYCBP2
Processing conservation and coverage...
69% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.639408e-02	ci left: 5.271675e-01	ci right 5.468110e-01	k: 5370	n:10000
Cons ci ratio: 2.673487e-02	ci left: 6.732741e-01	ci right 6.916195e-01	k: 6825	n:10000
KS ci ratio: 5.536657e-02	ci left: 3.245569e-01	ci right 3.431400e-01	k: 3338	n:10000
MYCBP2   10000 perm   4 sec   (2702 perm/sec)   p_kst 3.338000e-01   p_cons 6.825000e-01   p_joint 5.370000e-01

Outputting figure to mutsig2_images.part000000000110/MYCBP2.20_14369_10000_0.3338_0.6825_0.537.png
                gene_name: MYCBP2
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 11 percent done.
MUC4
Processing conservation and coverage...
Processing mutations... 
Skipping 11 mutations outside exons of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.907287e-02	ci left: 6.356307e-01	ci right 6.544847e-01	k: 6451	n:10000
Cons ci ratio: 3.027066e-02	ci left: 6.168328e-01	ci right 6.358936e-01	k: 6264	n:10000
KS ci ratio: 5.275826e-02	ci left: 3.462109e-01	ci right 3.650732e-01	k: 3556	n:10000
MUC4   10000 perm   2 sec   (4801 perm/sec)   p_kst 3.556000e-01   p_cons 6.264000e-01   p_joint 6.451000e-01

Outputting figure to mutsig2_images.part000000000110/MUC4.8_3627_10000_0.3556_0.6264_0.6451.png
                gene_name: MUC4
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.65 

Current progress: 13 percent done.
MYH15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.273432e-02	ci left: 7.396724e-01	ci right 7.567828e-01	k: 7483	n:10000
KS ci ratio: 2.005282e-02	ci left: 7.845188e-01	ci right 8.005105e-01	k: 7926	n:10000
MYH15   10000 perm   3 sec   (3978 perm/sec)   p_kst 7.926000e-01   p_cons 7.483000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000110/MYH15.17_6009_10000_0.7926_0.7483_1.png
                gene_name: MYH15
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 15 percent done.
MUC6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.715309e-02	ci left: 1.331568e-01	ci right 1.468536e-01	k: 1399	n:10000
Cons ci ratio: 5.169162e-03	ci left: 9.802710e-01	ci right 9.854422e-01	k: 9830	n:10000
KS ci ratio: 1.555655e-01	ci left: 5.503869e-02	ci right 6.441983e-02	k: 596	n:10000
MUC6   10000 perm   3 sec   (3665 perm/sec)   p_kst 5.960000e-02   p_cons 9.830000e-01   p_joint 1.399000e-01

Joint ci ratio: 7.315137e-02	ci left: 1.209384e-01	ci right 1.301708e-01	k: 2510	n:20000
Cons ci ratio: 3.650168e-03	ci left: 9.811116e-01	ci right 9.847461e-01	k: 19660	n:20000
KS ci ratio: 1.065803e-01	ci left: 5.996397e-02	ci right 6.676366e-02	k: 1266	n:20000
MUC6   20000 perm   6 sec   (3371 perm/sec)   p_kst 6.330000e-02   p_cons 9.830000e-01   p_joint 1.255000e-01

Joint ci ratio: 6.065721e-02	ci left: 1.184810e-01	ci right 1.259257e-01	k: 3665	n:30000
Cons ci ratio: 3.023168e-03	ci left: 9.809519e-01	ci right 9.839536e-01	k: 29475	n:30000
KS ci ratio: 9.068307e-02	ci left: 5.596837e-02	ci right 6.131750e-02	k: 1758	n:30000
MUC6   30000 perm   9 sec   (3251 perm/sec)   p_kst 5.860000e-02   p_cons 9.825000e-01   p_joint 1.221667e-01

Outputting figure to mutsig2_images.part000000000110/MUC6.16_7452_30000_0.0586_0.9825_0.12217.png
                gene_name: MUC6
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.059 
        ci_ks_bounds_left: 0.056 
       ci_ks_bounds_right: 0.061 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 17 percent done.
MXRA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.700814e-02	ci left: 8.342946e-01	ci right 8.487059e-01	k: 8416	n:10000
Cons ci ratio: 7.714091e-03	ci left: 9.589035e-01	ci right 9.664239e-01	k: 9628	n:10000
KS ci ratio: 3.722914e-02	ci left: 5.158568e-01	ci right 5.355282e-01	k: 5257	n:10000
MXRA5   10000 perm   3 sec   (3659 perm/sec)   p_kst 5.257000e-01   p_cons 9.628000e-01   p_joint 8.416000e-01

Outputting figure to mutsig2_images.part000000000110/MXRA5.15_8511_10000_0.5257_0.9628_0.8416.png
                gene_name: MXRA5
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 19 percent done.
MYH6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.916278e-02	ci left: 4.905513e-01	ci right 5.102485e-01	k: 5004	n:10000
Cons ci ratio: 8.165271e-02	ci left: 1.795967e-01	ci right 1.949860e-01	k: 1872	n:10000
KS ci ratio: 1.699539e-02	ci left: 8.344982e-01	ci right 8.489022e-01	k: 8418	n:10000
MYH6   10000 perm   3 sec   (3805 perm/sec)   p_kst 8.418000e-01   p_cons 1.872000e-01   p_joint 5.004000e-01

Outputting figure to mutsig2_images.part000000000110/MYH6.14_5968_10000_0.8418_0.1872_0.5004.png
                gene_name: MYH6
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 21 percent done.
MYH7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.209097e-02	ci left: 4.545866e-01	ci right 4.742341e-01	k: 4644	n:10000
KS ci ratio: 1.494741e-02	ci left: 8.664173e-01	ci right 8.795646e-01	k: 8731	n:10000
MYH7   10000 perm   3 sec   (3763 perm/sec)   p_kst 8.731000e-01   p_cons 4.644000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000110/MYH7.13_5960_10000_0.8731_0.4644_1.png
                gene_name: MYH7
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 23 percent done.
MYH9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.057512e-02	ci left: 3.656978e-01	ci right 3.847749e-01	k: 3752	n:10000
Cons ci ratio: 2.008330e-02	ci left: 7.840118e-01	ci right 8.000177e-01	k: 7921	n:10000
KS ci ratio: 7.150104e-02	ci left: 2.227686e-01	ci right 2.393884e-01	k: 2310	n:10000
MYH9   10000 perm   2 sec   (4115 perm/sec)   p_kst 2.310000e-01   p_cons 7.921000e-01   p_joint 3.752000e-01

Outputting figure to mutsig2_images.part000000000110/MYH9.13_6043_10000_0.231_0.7921_0.3752.png
                gene_name: MYH9
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.38 

Current progress: 25 percent done.
MUC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.804930e-02	ci left: 8.175101e-01	ci right 8.325001e-01	k: 8251	n:10000
KS ci ratio: 2.539863e-02	ci left: 6.952470e-01	ci right 7.132339e-01	k: 7043	n:10000
MUC2   10000 perm   3 sec   (3450 perm/sec)   p_kst 7.043000e-01   p_cons 8.251000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000110/MUC2.11_8642_10000_0.7043_0.8251_1.png
                gene_name: MUC2
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 26 percent done.
MYH13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.322110e-01	ci left: 7.543425e-02	ci right 8.621143e-02	k: 807	n:10000
Cons ci ratio: 2.043162e-01	ci left: 3.186407e-02	ci right 3.920972e-02	k: 354	n:10000
KS ci ratio: 1.038522e-01	ci left: 1.181869e-01	ci right 1.312326e-01	k: 1246	n:10000
MYH13   10000 perm   3 sec   (3949 perm/sec)   p_kst 1.246000e-01   p_cons 3.540000e-02   p_joint 8.070000e-02

Joint ci ratio: 1.040601e-01	ci left: 6.279246e-02	ci right 6.973429e-02	k: 1324	n:20000
Cons ci ratio: 1.483095e-01	ci left: 3.124203e-02	ci right 3.629470e-02	k: 674	n:20000
KS ci ratio: 7.140574e-02	ci left: 1.262544e-01	ci right 1.356532e-01	k: 2618	n:20000
MYH13   20000 perm   6 sec   (3626 perm/sec)   p_kst 1.309000e-01   p_cons 3.370000e-02   p_joint 6.620000e-02

Joint ci ratio: 9.460228e-02	ci left: 5.156679e-02	ci right 5.671998e-02	k: 1623	n:30000
Cons ci ratio: 1.221288e-01	ci left: 3.116896e-02	ci right 3.525542e-02	k: 995	n:30000
KS ci ratio: 6.007065e-02	ci left: 1.205536e-01	ci right 1.280527e-01	k: 3728	n:30000
MYH13   30000 perm   9 sec   (3492 perm/sec)   p_kst 1.242667e-01   p_cons 3.316667e-02   p_joint 5.410000e-02

Joint ci ratio: 9.005595e-02	ci left: 4.318474e-02	ci right 4.728161e-02	k: 1808	n:40000
Cons ci ratio: 1.071518e-01	ci left: 3.063765e-02	ci right 3.413066e-02	k: 1294	n:40000
KS ci ratio: 5.198109e-02	ci left: 1.212300e-01	ci right 1.277246e-01	k: 4978	n:40000
MYH13   40000 perm   12 sec   (3411 perm/sec)   p_kst 1.244500e-01   p_cons 3.235000e-02   p_joint 4.520000e-02

Joint ci ratio: 8.720780e-02	ci left: 3.714368e-02	ci right 4.055013e-02	k: 1941	n:50000
Cons ci ratio: 9.395903e-02	ci left: 3.205720e-02	ci right 3.523724e-02	k: 1681	n:50000
KS ci ratio: 4.649232e-02	ci left: 1.215784e-01	ci right 1.273853e-01	k: 6223	n:50000
MYH13   50000 perm   15 sec   (3350 perm/sec)   p_kst 1.244600e-01   p_cons 3.362000e-02   p_joint 3.882000e-02

Outputting figure to mutsig2_images.part000000000110/MYH13.11_5973_50000_0.12446_0.03362_0.03882.png
                gene_name: MYH13
               theta_stop: 0.094 
                    nperm: 50000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.034 
      ci_cons_bounds_left: 0.032 
     ci_cons_bounds_right: 0.035 
                  p_joint: 0.039 
     ci_joint_bounds_left: 0.037 
    ci_joint_bounds_right: 0.041 

Current progress: 28 percent done.
MYO16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.743342e-02	ci left: 8.274759e-01	ci right 8.421285e-01	k: 8349	n:10000
Cons ci ratio: 4.318138e-02	ci left: 4.419113e-01	ci right 4.615169e-01	k: 4517	n:10000
KS ci ratio: 2.955702e-02	ci left: 6.279891e-01	ci right 6.469308e-01	k: 6375	n:10000
MYO16   10000 perm   2 sec   (4017 perm/sec)   p_kst 6.375000e-01   p_cons 4.517000e-01   p_joint 8.349000e-01

Outputting figure to mutsig2_images.part000000000110/MYO16.11_5713_10000_0.6375_0.4517_0.8349.png
                gene_name: MYO16
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 30 percent done.
MYBPC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.545961e-02	ci left: 6.942385e-01	ci right 7.122429e-01	k: 7033	n:10000
Cons ci ratio: 6.465934e-03	ci left: 9.702664e-01	ci right 9.766537e-01	k: 9736	n:10000
KS ci ratio: 4.233711e-02	ci left: 4.516917e-01	ci right 4.713307e-01	k: 4615	n:10000
MYBPC1   10000 perm   2 sec   (4516 perm/sec)   p_kst 4.615000e-01   p_cons 9.736000e-01   p_joint 7.033000e-01

Outputting figure to mutsig2_images.part000000000110/MYBPC1.9_3698_10000_0.4615_0.9736_0.7033.png
                gene_name: MYBPC1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 32 percent done.
MYO15A
Processing conservation and coverage...
92% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.425851e-02	ci left: 8.767431e-01	ci right 8.894328e-01	k: 8832	n:10000
Cons ci ratio: 3.183017e-02	ci left: 5.929300e-01	ci right 6.122102e-01	k: 6026	n:10000
KS ci ratio: 1.636594e-02	ci left: 8.444801e-01	ci right 8.585145e-01	k: 8516	n:10000
MYO15A   10000 perm   3 sec   (3316 perm/sec)   p_kst 8.516000e-01   p_cons 6.026000e-01   p_joint 8.832000e-01

Outputting figure to mutsig2_images.part000000000110/MYO15A.9_10849_10000_0.8516_0.6026_0.8832.png
                gene_name: MYO15A
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 34 percent done.
MYH11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.027713e-02	ci left: 6.167323e-01	ci right 6.357941e-01	k: 6263	n:10000
Cons ci ratio: 3.817613e-03	ci left: 9.886188e-01	ci right 9.924873e-01	k: 9907	n:10000
KS ci ratio: 3.973073e-02	ci left: 4.833543e-01	ci right 5.030497e-01	k: 4932	n:10000
MYH11   10000 perm   2 sec   (4172 perm/sec)   p_kst 4.932000e-01   p_cons 9.907000e-01   p_joint 6.263000e-01

Outputting figure to mutsig2_images.part000000000110/MYH11.8_6139_10000_0.4932_0.9907_0.6263.png
                gene_name: MYH11
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 36 percent done.
MYH7B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.069448e-02	ci left: 1.502147e-01	ci right 1.645855e-01	k: 1573	n:10000
Cons ci ratio: 1.712220e-01	ci left: 4.552219e-02	ci right 5.414247e-02	k: 497	n:10000
KS ci ratio: 4.026683e-02	ci left: 4.766589e-01	ci right 4.963490e-01	k: 4865	n:10000
MYH7B   10000 perm   2 sec   (4335 perm/sec)   p_kst 4.865000e-01   p_cons 4.970000e-02   p_joint 1.573000e-01

Joint ci ratio: 7.477795e-02	ci left: 1.162646e-01	ci right 1.253460e-01	k: 2415	n:20000
Cons ci ratio: 1.277643e-01	ci left: 4.207135e-02	ci right 4.786188e-02	k: 898	n:20000
KS ci ratio: 2.752594e-02	ci left: 4.964956e-01	ci right 5.104034e-01	k: 10069	n:20000
MYH7B   20000 perm   5 sec   (3948 perm/sec)   p_kst 5.034500e-01   p_cons 4.490000e-02   p_joint 1.207500e-01

Joint ci ratio: 5.255523e-02	ci left: 1.523064e-01	ci right 1.605602e-01	k: 4692	n:30000
Cons ci ratio: 1.028316e-01	ci left: 4.381946e-02	ci right 4.860225e-02	k: 1385	n:30000
KS ci ratio: 2.230596e-02	ci left: 5.015589e-01	ci right 5.129064e-01	k: 15217	n:30000
MYH7B   30000 perm   8 sec   (3789 perm/sec)   p_kst 5.072333e-01   p_cons 4.616667e-02   p_joint 1.564000e-01

Joint ci ratio: 4.403948e-02	ci left: 1.616717e-01	ci right 1.689769e-01	k: 6612	n:40000
Cons ci ratio: 8.581808e-02	ci left: 4.744357e-02	ci right 5.172212e-02	k: 1982	n:40000
KS ci ratio: 2.006938e-02	ci left: 4.832400e-01	ci right 4.930617e-01	k: 19526	n:40000
MYH7B   40000 perm   11 sec   (3695 perm/sec)   p_kst 4.881500e-01   p_cons 4.955000e-02   p_joint 1.653000e-01

Outputting figure to mutsig2_images.part000000000110/MYH7B.8_6124_40000_0.48815_0.04955_0.1653.png
                gene_name: MYH7B
               theta_stop: 0.086 
                    nperm: 40000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.050 
      ci_cons_bounds_left: 0.047 
     ci_cons_bounds_right: 0.052 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 38 percent done.
MYLK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.091423e-02	ci left: 6.068871e-01	ci right 6.260450e-01	k: 6165	n:10000
KS ci ratio: 1.997354e-02	ci left: 7.858368e-01	ci right 8.017917e-01	k: 7939	n:10000
MYLK   10000 perm   2 sec   (4242 perm/sec)   p_kst 7.939000e-01   p_cons 6.165000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000110/MYLK.8_5869_10000_0.7939_0.6165_1.png
                gene_name: MYLK
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 40 percent done.
MUM1L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.272211e-01	ci left: 2.560990e-02	ci right 3.226830e-02	k: 288	n:10000
Cons ci ratio: 7.145810e-01	ci left: 1.943009e-03	ci right 4.162249e-03	k: 29	n:10000
KS ci ratio: 2.471135e-02	ci left: 7.066461e-01	ci right 7.244281e-01	k: 7156	n:10000
MUM1L1   10000 perm   2 sec   (5536 perm/sec)   p_kst 7.156000e-01   p_cons 2.900000e-03   p_joint 2.880000e-02

Joint ci ratio: 1.334607e-01	ci left: 3.858415e-02	ci right 4.415019e-02	k: 826	n:20000
Cons ci ratio: 4.319925e-01	ci left: 3.217547e-03	ci right 5.031303e-03	k: 81	n:20000
KS ci ratio: 1.637446e-02	ci left: 7.351710e-01	ci right 7.473587e-01	k: 14826	n:20000
MUM1L1   20000 perm   4 sec   (4995 perm/sec)   p_kst 7.413000e-01   p_cons 4.050000e-03   p_joint 4.130000e-02

Joint ci ratio: 1.326951e-01	ci left: 2.638812e-02	ci right 3.017064e-02	k: 847	n:30000
Cons ci ratio: 3.457367e-01	ci left: 3.530325e-03	ci right 5.034838e-03	k: 127	n:30000
KS ci ratio: 1.351500e-02	ci left: 7.321127e-01	ci right 7.421080e-01	k: 22114	n:30000
MUM1L1   30000 perm   6 sec   (4773 perm/sec)   p_kst 7.371333e-01   p_cons 4.233333e-03   p_joint 2.823333e-02

Joint ci ratio: 1.074955e-01	ci left: 3.044286e-02	ci right 3.392549e-02	k: 1286	n:40000
Cons ci ratio: 3.000070e-01	ci left: 3.613074e-03	ci right 4.910520e-03	k: 169	n:40000
KS ci ratio: 1.165253e-02	ci left: 7.345156e-01	ci right 7.431497e-01	k: 29554	n:40000
MUM1L1   40000 perm   9 sec   (4626 perm/sec)   p_kst 7.388500e-01   p_cons 4.225000e-03   p_joint 3.215000e-02

Joint ci ratio: 1.225892e-01	ci left: 1.881019e-02	ci right 2.128597e-02	k: 1001	n:50000
Cons ci ratio: 2.705821e-01	ci left: 3.614787e-03	ci right 4.763953e-03	k: 208	n:50000
KS ci ratio: 1.041398e-02	ci left: 7.352874e-01	ci right 7.430048e-01	k: 36958	n:50000
MUM1L1   50000 perm   11 sec   (4507 perm/sec)   p_kst 7.391600e-01   p_cons 4.160000e-03   p_joint 2.002000e-02

Joint ci ratio: 1.157176e-01	ci left: 1.767966e-02	ci right 1.986724e-02	k: 1125	n:60000
Cons ci ratio: 2.525262e-01	ci left: 3.495121e-03	ci right 4.520439e-03	k: 239	n:60000
KS ci ratio: 9.514680e-03	ci left: 7.352987e-01	ci right 7.423449e-01	k: 44330	n:60000
MUM1L1   60000 perm   14 sec   (4399 perm/sec)   p_kst 7.388333e-01   p_cons 3.983333e-03   p_joint 1.875000e-02

Joint ci ratio: 1.096561e-01	ci left: 1.694457e-02	ci right 1.892425e-02	k: 1254	n:70000
Cons ci ratio: 2.325467e-01	ci left: 3.572844e-03	ci right 4.526133e-03	k: 282	n:70000
KS ci ratio: 8.797258e-03	ci left: 7.360738e-01	ci right 7.425921e-01	k: 51754	n:70000
MUM1L1   70000 perm   16 sec   (4303 perm/sec)   p_kst 7.393429e-01   p_cons 4.028571e-03   p_joint 1.791429e-02

Joint ci ratio: 1.114624e-01	ci left: 1.437571e-02	ci right 1.608471e-02	k: 1217	n:80000
Cons ci ratio: 2.163317e-01	ci left: 3.645367e-03	ci right 4.541185e-03	k: 326	n:80000
KS ci ratio: 8.228932e-03	ci left: 7.362931e-01	ci right 7.423895e-01	k: 59148	n:80000
MUM1L1   80000 perm   19 sec   (4214 perm/sec)   p_kst 7.393500e-01   p_cons 4.075000e-03   p_joint 1.521250e-02

Joint ci ratio: 9.306145e-02	ci left: 1.843286e-02	ci right 2.024276e-02	k: 1739	n:90000
Cons ci ratio: 2.056147e-01	ci left: 3.608671e-03	ci right 4.446017e-03	k: 361	n:90000
KS ci ratio: 8.039192e-03	ci left: 7.224825e-01	ci right 7.283252e-01	k: 65287	n:90000
MUM1L1   90000 perm   22 sec   (4136 perm/sec)   p_kst 7.254111e-01   p_cons 4.011111e-03   p_joint 1.932222e-02

Joint ci ratio: 6.895010e-02	ci left: 3.022938e-02	ci right 3.239792e-02	k: 3130	n:100000
Cons ci ratio: 1.813616e-01	ci left: 4.228213e-03	ci right 5.080910e-03	k: 464	n:100000
KS ci ratio: 7.617866e-03	ci left: 7.230937e-01	ci right 7.286332e-01	k: 72587	n:100000
MUM1L1   100000 perm   25 sec   (4062 perm/sec)   p_kst 7.258700e-01   p_cons 4.640000e-03   p_joint 3.130000e-02

Joint ci ratio: 7.139760e-02	ci left: 2.571957e-02	ci right 2.763277e-02	k: 2933	n:110000
Cons ci ratio: 1.718281e-01	ci left: 4.304377e-03	ci right 5.122074e-03	k: 517	n:110000
KS ci ratio: 7.282718e-03	ci left: 7.221594e-01	ci right 7.274469e-01	k: 79729	n:110000
MUM1L1   110000 perm   28 sec   (3994 perm/sec)   p_kst 7.248091e-01   p_cons 4.700000e-03   p_joint 2.666364e-02

Joint ci ratio: 8.483041e-02	ci left: 1.674114e-02	ci right 1.823231e-02	k: 2097	n:120000
Cons ci ratio: 1.796949e-01	ci left: 3.595014e-03	ci right 4.312619e-03	k: 473	n:120000
KS ci ratio: 6.983757e-03	ci left: 7.216367e-01	ci right 7.267024e-01	k: 86901	n:120000
MUM1L1   120000 perm   31 sec   (3905 perm/sec)   p_kst 7.241750e-01   p_cons 3.941667e-03   p_joint 1.747500e-02

Joint ci ratio: 7.595567e-02	ci left: 1.931378e-02	ci right 2.084619e-02	k: 2609	n:130000
Cons ci ratio: 1.718908e-01	ci left: 3.642056e-03	ci right 4.334204e-03	k: 517	n:130000
KS ci ratio: 6.714656e-03	ci left: 7.214455e-01	ci right 7.263137e-01	k: 94105	n:130000
MUM1L1   130000 perm   34 sec   (3814 perm/sec)   p_kst 7.238846e-01   p_cons 3.976923e-03   p_joint 2.006923e-02

Joint ci ratio: 7.525093e-02	ci left: 1.829827e-02	ci right 1.973604e-02	k: 2661	n:140000
Cons ci ratio: 1.654664e-01	ci left: 3.662409e-03	ci right 4.329821e-03	k: 558	n:140000
KS ci ratio: 6.475822e-03	ci left: 7.211991e-01	ci right 7.258917e-01	k: 101297	n:140000
MUM1L1   140000 perm   38 sec   (3705 perm/sec)   p_kst 7.235500e-01   p_cons 3.985714e-03   p_joint 1.900714e-02

Joint ci ratio: 6.824862e-02	ci left: 2.078503e-02	ci right 2.226022e-02	k: 3227	n:150000
Cons ci ratio: 1.602496e-01	ci left: 3.654862e-03	ci right 4.297878e-03	k: 595	n:150000
KS ci ratio: 6.253789e-03	ci left: 7.214361e-01	ci right 7.259686e-01	k: 108556	n:150000
MUM1L1   150000 perm   41 sec   (3664 perm/sec)   p_kst 7.237067e-01   p_cons 3.966667e-03   p_joint 2.151333e-02

Joint ci ratio: 6.379185e-02	ci left: 2.232023e-02	ci right 2.379712e-02	k: 3688	n:160000
Cons ci ratio: 1.553739e-01	ci left: 3.654555e-03	ci right 4.276132e-03	k: 633	n:160000
KS ci ratio: 6.053888e-03	ci left: 7.215957e-01	ci right 7.259837e-01	k: 115807	n:160000
MUM1L1   160000 perm   44 sec   (3623 perm/sec)   p_kst 7.237938e-01   p_cons 3.956250e-03   p_joint 2.305000e-02

Joint ci ratio: 6.052259e-02	ci left: 2.335299e-02	ci right 2.481624e-02	k: 4093	n:170000
Cons ci ratio: 1.514845e-01	ci left: 3.626242e-03	ci right 4.226164e-03	k: 666	n:170000
KS ci ratio: 5.978997e-03	ci left: 7.144453e-01	ci right 7.187356e-01	k: 121821	n:170000
MUM1L1   170000 perm   47 sec   (3579 perm/sec)   p_kst 7.165941e-01   p_cons 3.917647e-03   p_joint 2.407647e-02

Joint ci ratio: 5.834893e-02	ci left: 2.374689e-02	ci right 2.517959e-02	k: 4402	n:180000
Cons ci ratio: 1.458987e-01	ci left: 3.702938e-03	ci right 4.290991e-03	k: 718	n:180000
KS ci ratio: 5.808311e-03	ci left: 7.146622e-01	ci right 7.188308e-01	k: 129015	n:180000
MUM1L1   180000 perm   51 sec   (3538 perm/sec)   p_kst 7.167500e-01   p_cons 3.988889e-03   p_joint 2.445556e-02

Joint ci ratio: 5.483805e-02	ci left: 2.547081e-02	ci right 2.691212e-02	k: 4975	n:190000
Cons ci ratio: 1.421903e-01	ci left: 3.700839e-03	ci right 4.272353e-03	k: 756	n:190000
KS ci ratio: 5.652919e-03	ci left: 7.147524e-01	ci right 7.188095e-01	k: 136189	n:190000
MUM1L1   190000 perm   54 sec   (3496 perm/sec)   p_kst 7.167842e-01   p_cons 3.978947e-03   p_joint 2.618421e-02

Joint ci ratio: 5.070666e-02	ci left: 2.827878e-02	ci right 2.975491e-02	k: 5802	n:200000
Cons ci ratio: 1.379692e-01	ci left: 3.742568e-03	ci right 4.301959e-03	k: 803	n:200000
KS ci ratio: 5.508756e-03	ci left: 7.148799e-01	ci right 7.188338e-01	k: 143372	n:200000
MUM1L1   200000 perm   58 sec   (3454 perm/sec)   p_kst 7.168600e-01   p_cons 4.015000e-03   p_joint 2.901000e-02

Joint ci ratio: 5.044846e-02	ci left: 2.724211e-02	ci right 2.865667e-02	k: 5868	n:210000
Cons ci ratio: 1.348207e-01	ci left: 3.739127e-03	ci right 4.284227e-03	k: 841	n:210000
KS ci ratio: 5.381269e-03	ci left: 7.145288e-01	ci right 7.183890e-01	k: 150457	n:210000
MUM1L1   210000 perm   62 sec   (3413 perm/sec)   p_kst 7.164619e-01   p_cons 4.004762e-03   p_joint 2.794286e-02

Joint ci ratio: 5.033183e-02	ci left: 2.615606e-02	ci right 2.751099e-02	k: 5902	n:220000
Cons ci ratio: 1.310584e-01	ci left: 3.784493e-03	ci right 4.319613e-03	k: 890	n:220000
KS ci ratio: 5.255053e-03	ci left: 7.147664e-01	ci right 7.185370e-01	k: 157664	n:220000
MUM1L1   220000 perm   65 sec   (3372 perm/sec)   p_kst 7.166545e-01   p_cons 4.045455e-03   p_joint 2.682727e-02

Joint ci ratio: 4.935434e-02	ci left: 2.603639e-02	ci right 2.735818e-02	k: 6139	n:230000
Cons ci ratio: 1.279366e-01	ci left: 3.805060e-03	ci right 4.329299e-03	k: 934	n:230000
KS ci ratio: 5.143975e-03	ci left: 7.144572e-01	ci right 7.181461e-01	k: 164750	n:230000
MUM1L1   230000 perm   69 sec   (3327 perm/sec)   p_kst 7.163043e-01   p_cons 4.060870e-03   p_joint 2.669130e-02

Joint ci ratio: 4.997456e-02	ci left: 2.437081e-02	ci right 2.562403e-02	k: 5998	n:240000
Cons ci ratio: 1.252850e-01	ci left: 3.807904e-03	ci right 4.320854e-03	k: 974	n:240000
KS ci ratio: 4.722280e-03	ci left: 7.399230e-01	ci right 7.434295e-01	k: 178003	n:240000
MUM1L1   240000 perm   74 sec   (3251 perm/sec)   p_kst 7.416792e-01   p_cons 4.058333e-03   p_joint 2.499167e-02

Joint ci ratio: 4.621266e-02	ci left: 2.732911e-02	ci right 2.862586e-02	k: 6993	n:250000
Cons ci ratio: 1.226703e-01	ci left: 3.818379e-03	ci right 4.321226e-03	k: 1016	n:250000
KS ci ratio: 4.627005e-03	ci left: 7.399474e-01	ci right 7.433830e-01	k: 185417	n:250000
MUM1L1   250000 perm   78 sec   (3213 perm/sec)   p_kst 7.416680e-01   p_cons 4.064000e-03   p_joint 2.797200e-02

Joint ci ratio: 4.839695e-02	ci left: 2.401557e-02	ci right 2.521045e-02	k: 6398	n:260000
Cons ci ratio: 1.198724e-01	ci left: 3.850537e-03	ci right 4.345233e-03	k: 1064	n:260000
KS ci ratio: 4.533768e-03	ci left: 7.402673e-01	ci right 7.436350e-01	k: 192908	n:260000
MUM1L1   260000 perm   82 sec   (3177 perm/sec)   p_kst 7.419538e-01   p_cons 4.092308e-03   p_joint 2.460769e-02

Joint ci ratio: 4.801001e-02	ci left: 2.351747e-02	ci right 2.467796e-02	k: 6505	n:270000
Cons ci ratio: 1.180590e-01	ci left: 3.826507e-03	ci right 4.310160e-03	k: 1097	n:270000
KS ci ratio: 4.451192e-03	ci left: 7.401114e-01	ci right 7.434168e-01	k: 200277	n:270000
MUM1L1   270000 perm   86 sec   (3142 perm/sec)   p_kst 7.417667e-01   p_cons 4.062963e-03   p_joint 2.409259e-02

Joint ci ratio: 4.759853e-02	ci left: 2.308678e-02	ci right 2.421597e-02	k: 6621	n:280000
Cons ci ratio: 1.158636e-01	ci left: 3.835459e-03	ci right 4.310611e-03	k: 1139	n:280000
KS ci ratio: 4.368484e-03	ci left: 7.403608e-01	ci right 7.436056e-01	k: 207756	n:280000
MUM1L1   280000 perm   90 sec   (3110 perm/sec)   p_kst 7.419857e-01   p_cons 4.067857e-03   p_joint 2.364643e-02

Joint ci ratio: 4.713623e-02	ci left: 2.274377e-02	ci right 2.384509e-02	k: 6754	n:290000
Cons ci ratio: 1.140286e-01	ci left: 3.827118e-03	ci right 4.293223e-03	k: 1176	n:290000
KS ci ratio: 4.292963e-03	ci left: 7.403481e-01	ci right 7.435367e-01	k: 215164	n:290000
MUM1L1   290000 perm   94 sec   (3077 perm/sec)   p_kst 7.419448e-01   p_cons 4.055172e-03   p_joint 2.328966e-02

Joint ci ratio: 4.682974e-02	ci left: 2.228859e-02	ci right 2.336066e-02	k: 6846	n:300000
Cons ci ratio: 1.119546e-01	ci left: 3.842071e-03	ci right 4.300924e-03	k: 1220	n:300000
KS ci ratio: 4.219097e-03	ci left: 7.405305e-01	ci right 7.436648e-01	k: 222630	n:300000
MUM1L1   300000 perm   99 sec   (3045 perm/sec)   p_kst 7.421000e-01   p_cons 4.066667e-03   p_joint 2.282000e-02

Joint ci ratio: 4.592969e-02	ci left: 2.243051e-02	ci right 2.348812e-02	k: 7116	n:310000
Cons ci ratio: 1.099897e-01	ci left: 3.856131e-03	ci right 4.308056e-03	k: 1264	n:310000
KS ci ratio: 4.148076e-03	ci left: 7.407791e-01	ci right 7.438615e-01	k: 230120	n:310000
MUM1L1   310000 perm   103 sec   (3014 perm/sec)   p_kst 7.423226e-01   p_cons 4.077419e-03   p_joint 2.295484e-02

Joint ci ratio: 4.671078e-02	ci left: 2.103112e-02	ci right 2.204007e-02	k: 6890	n:320000
Cons ci ratio: 1.082911e-01	ci left: 3.857214e-03	ci right 4.301841e-03	k: 1304	n:320000
KS ci ratio: 4.083223e-03	ci left: 7.407590e-01	ci right 7.437929e-01	k: 237529	n:320000
MUM1L1   320000 perm   107 sec   (2983 perm/sec)   p_kst 7.422781e-01   p_cons 4.075000e-03   p_joint 2.153125e-02

Joint ci ratio: 4.627569e-02	ci left: 2.078911e-02	ci right 2.177690e-02	k: 7022	n:330000
Cons ci ratio: 1.067885e-01	ci left: 3.849434e-03	ci right 4.286619e-03	k: 1341	n:330000
KS ci ratio: 4.021956e-03	ci left: 7.406796e-01	ci right 7.436676e-01	k: 244918	n:330000
MUM1L1   330000 perm   112 sec   (2952 perm/sec)   p_kst 7.421758e-01   p_cons 4.063636e-03   p_joint 2.127879e-02

Joint ci ratio: 4.138803e-02	ci left: 2.517360e-02	ci right 2.624039e-02	k: 8739	n:340000
Cons ci ratio: 1.050032e-01	ci left: 3.867928e-03	ci right 4.299416e-03	k: 1387	n:340000
KS ci ratio: 3.995284e-03	ci left: 7.375173e-01	ci right 7.404727e-01	k: 251259	n:340000
MUM1L1   340000 perm   116 sec   (2922 perm/sec)   p_kst 7.389971e-01   p_cons 4.079412e-03   p_joint 2.570294e-02

Joint ci ratio: 4.155996e-02	ci left: 2.427315e-02	ci right 2.530616e-02	k: 8675	n:350000
Cons ci ratio: 1.033045e-01	ci left: 3.885422e-03	ci right 4.311424e-03	k: 1433	n:350000
KS ci ratio: 3.936919e-03	ci left: 7.376246e-01	ci right 7.405371e-01	k: 258679	n:350000
MUM1L1   350000 perm   121 sec   (2892 perm/sec)   p_kst 7.390829e-01   p_cons 4.094286e-03   p_joint 2.478571e-02

Joint ci ratio: 4.129504e-02	ci left: 2.391494e-02	ci right 2.492606e-02	k: 8790	n:360000
Cons ci ratio: 1.018587e-01	ci left: 3.888461e-03	ci right 4.308472e-03	k: 1474	n:360000
KS ci ratio: 3.879473e-03	ci left: 7.378821e-01	ci right 7.407530e-01	k: 266155	n:360000
MUM1L1   360000 perm   126 sec   (2862 perm/sec)   p_kst 7.393194e-01   p_cons 4.094444e-03   p_joint 2.441667e-02

Joint ci ratio: 4.076139e-02	ci left: 2.388918e-02	ci right 2.488585e-02	k: 9022	n:370000
Cons ci ratio: 1.007726e-01	ci left: 3.867660e-03	ci right 4.280707e-03	k: 1506	n:370000
KS ci ratio: 3.828707e-03	ci left: 7.376981e-01	ci right 7.405306e-01	k: 273473	n:370000
MUM1L1   370000 perm   131 sec   (2833 perm/sec)   p_kst 7.391162e-01   p_cons 4.070270e-03   p_joint 2.438378e-02

Joint ci ratio: 4.047710e-02	ci left: 2.359908e-02	ci right 2.457662e-02	k: 9152	n:380000
Cons ci ratio: 9.936470e-02	ci left: 3.876206e-03	ci right 4.284045e-03	k: 1549	n:380000
KS ci ratio: 3.777327e-03	ci left: 7.377850e-01	ci right 7.405797e-01	k: 280890	n:380000
MUM1L1   380000 perm   135 sec   (2805 perm/sec)   p_kst 7.391842e-01   p_cons 4.076316e-03   p_joint 2.408421e-02

Outputting figure to mutsig2_images.part000000000110/MUM1L1.6_2095_380000_0.73918_0.0040763_0.024084.png
                gene_name: MUM1L1
               theta_stop: 0.099 
                    nperm: 380000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.0041 
      ci_cons_bounds_left: 0.0039 
     ci_cons_bounds_right: 0.0043 
                  p_joint: 0.024 
     ci_joint_bounds_left: 0.024 
    ci_joint_bounds_right: 0.025 

Current progress: 42 percent done.
MYF5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.648733e-01	ci left: 4.907401e-02	ci right 5.798834e-02	k: 534	n:10000
Cons ci ratio: 1.329282e-01	ci left: 7.465870e-02	ci right 8.538747e-02	k: 799	n:10000
KS ci ratio: 1.689143e-01	ci left: 4.676942e-02	ci right 5.549443e-02	k: 510	n:10000
MYF5   10000 perm   2 sec   (6109 perm/sec)   p_kst 5.100000e-02   p_cons 7.990000e-02   p_joint 5.340000e-02

Joint ci ratio: 1.109456e-01	ci left: 5.548160e-02	ci right 6.204742e-02	k: 1174	n:20000
Cons ci ratio: 9.323836e-02	ci left: 7.740166e-02	ci right 8.502062e-02	k: 1623	n:20000
KS ci ratio: 1.214604e-01	ci left: 4.648596e-02	ci right 5.254587e-02	k: 989	n:20000
MYF5   20000 perm   4 sec   (5305 perm/sec)   p_kst 4.945000e-02   p_cons 8.115000e-02   p_joint 5.870000e-02

Joint ci ratio: 1.109690e-01	ci left: 3.771320e-02	ci right 4.217646e-02	k: 1197	n:30000
Cons ci ratio: 7.678301e-02	ci left: 7.685596e-02	ci right 8.302568e-02	k: 2397	n:30000
KS ci ratio: 9.938418e-02	ci left: 4.684472e-02	ci right 5.177636e-02	k: 1478	n:30000
MYF5   30000 perm   6 sec   (5103 perm/sec)   p_kst 4.926667e-02   p_cons 7.990000e-02   p_joint 3.990000e-02

Joint ci ratio: 8.577258e-02	ci left: 4.749255e-02	ci right 5.177313e-02	k: 1984	n:40000
Cons ci ratio: 6.626379e-02	ci left: 7.777796e-02	ci right 8.313313e-02	k: 3217	n:40000
KS ci ratio: 8.593212e-02	ci left: 4.732112e-02	ci right 5.159459e-02	k: 1977	n:40000
MYF5   40000 perm   8 sec   (4956 perm/sec)   p_kst 4.942500e-02   p_cons 8.042500e-02   p_joint 4.960000e-02

Outputting figure to mutsig2_images.part000000000110/MYF5.6_780_40000_0.049425_0.080425_0.0496.png
                gene_name: MYF5
               theta_stop: 0.086 
                    nperm: 40000 
                     p_ks: 0.049 
        ci_ks_bounds_left: 0.047 
       ci_ks_bounds_right: 0.052 
                   p_cons: 0.080 
      ci_cons_bounds_left: 0.078 
     ci_cons_bounds_right: 0.083 
                  p_joint: 0.050 
     ci_joint_bounds_left: 0.047 
    ci_joint_bounds_right: 0.052 

Current progress: 43 percent done.
MYH14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.473999e-02	ci left: 4.244558e-01	ci right 4.439826e-01	k: 4342	n:10000
Cons ci ratio: 2.661160e-02	ci left: 6.752890e-01	ci right 6.936034e-01	k: 6845	n:10000
KS ci ratio: 9.390156e-02	ci left: 1.413875e-01	ci right 1.554180e-01	k: 1483	n:10000
MYH14   10000 perm   2 sec   (4190 perm/sec)   p_kst 1.483000e-01   p_cons 6.845000e-01   p_joint 4.342000e-01

Outputting figure to mutsig2_images.part000000000110/MYH14.6_6279_10000_0.1483_0.6845_0.4342.png
                gene_name: MYH14
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 45 percent done.
MYH3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.063518e-01	ci left: 1.132038e-01	ci right 1.260187e-01	k: 1195	n:10000
Cons ci ratio: 3.556745e-01	ci left: 9.867770e-03	ci right 1.422343e-02	k: 119	n:10000
KS ci ratio: 3.176376e-02	ci left: 5.939338e-01	ci right 6.132058e-01	k: 6036	n:10000
MYH3   10000 perm   2 sec   (4329 perm/sec)   p_kst 6.036000e-01   p_cons 1.190000e-02   p_joint 1.195000e-01

Joint ci ratio: 9.438160e-02	ci left: 7.564046e-02	ci right 8.318235e-02	k: 1587	n:20000
Cons ci ratio: 2.468626e-01	ci left: 1.091252e-02	ci right 1.403162e-02	k: 248	n:20000
KS ci ratio: 2.268516e-02	ci left: 5.920183e-01	ci right 6.056530e-01	k: 11977	n:20000
MYH3   20000 perm   5 sec   (3900 perm/sec)   p_kst 5.988500e-01   p_cons 1.240000e-02   p_joint 7.935000e-02

Joint ci ratio: 6.045075e-02	ci left: 1.192047e-01	ci right 1.266685e-01	k: 3687	n:30000
Cons ci ratio: 2.062269e-01	ci left: 1.067210e-02	ci right 1.315710e-02	k: 356	n:30000
KS ci ratio: 1.863146e-02	ci left: 5.904550e-01	ci right 6.015931e-01	k: 17881	n:30000
MYH3   30000 perm   8 sec   (3806 perm/sec)   p_kst 5.960333e-01   p_cons 1.186667e-02   p_joint 1.229000e-01

Joint ci ratio: 5.799722e-02	ci left: 9.951942e-02	ci right 1.054884e-01	k: 4099	n:40000
Cons ci ratio: 1.763621e-01	ci left: 1.112331e-02	ci right 1.329836e-02	k: 487	n:40000
KS ci ratio: 1.618941e-02	ci left: 5.895940e-01	ci right 5.992422e-01	k: 23777	n:40000
MYH3   40000 perm   11 sec   (3734 perm/sec)   p_kst 5.944250e-01   p_cons 1.217500e-02   p_joint 1.024750e-01

Joint ci ratio: 5.919227e-02	ci left: 7.824806e-02	ci right 8.304076e-02	k: 4031	n:50000
Cons ci ratio: 1.581376e-01	ci left: 1.117930e-02	ci right 1.311796e-02	k: 606	n:50000
KS ci ratio: 1.448409e-02	ci left: 5.899807e-01	ci right 5.986084e-01	k: 29715	n:50000
MYH3   50000 perm   14 sec   (3671 perm/sec)   p_kst 5.943000e-01   p_cons 1.212000e-02   p_joint 8.062000e-02

Joint ci ratio: 4.661905e-02	ci left: 1.029538e-01	ci right 1.078845e-01	k: 6324	n:60000
Cons ci ratio: 1.450057e-01	ci left: 1.116015e-02	ci right 1.292085e-02	k: 721	n:60000
KS ci ratio: 1.320662e-02	ci left: 5.909257e-01	ci right 5.987984e-01	k: 35692	n:60000
MYH3   60000 perm   17 sec   (3612 perm/sec)   p_kst 5.948667e-01   p_cons 1.201667e-02   p_joint 1.054000e-01

Joint ci ratio: 4.594363e-02	ci left: 9.203165e-02	ci right 9.637348e-02	k: 6593	n:70000
Cons ci ratio: 1.329246e-01	ci left: 1.145516e-02	ci right 1.309993e-02	k: 858	n:70000
KS ci ratio: 1.225805e-02	ci left: 5.899935e-01	ci right 5.972845e-01	k: 41555	n:70000
MYH3   70000 perm   20 sec   (3558 perm/sec)   p_kst 5.936429e-01   p_cons 1.225714e-02   p_joint 9.418571e-02

Joint ci ratio: 4.776568e-02	ci left: 7.579225e-02	ci right 7.951345e-02	k: 6211	n:80000
Cons ci ratio: 1.244497e-01	ci left: 1.148712e-02	ci right 1.302356e-02	k: 979	n:80000
KS ci ratio: 1.191473e-02	ci left: 5.715780e-01	ci right 5.784415e-01	k: 46001	n:80000
MYH3   80000 perm   23 sec   (3508 perm/sec)   p_kst 5.750125e-01   p_cons 1.223750e-02   p_joint 7.763750e-02

Joint ci ratio: 4.354958e-02	ci left: 8.078747e-02	ci right 8.439504e-02	k: 7432	n:90000
Cons ci ratio: 1.171443e-01	ci left: 1.156852e-02	ci right 1.301873e-02	k: 1105	n:90000
KS ci ratio: 1.123081e-02	ci left: 5.718848e-01	ci right 5.783548e-01	k: 51761	n:90000
MYH3   90000 perm   26 sec   (3455 perm/sec)   p_kst 5.751222e-01   p_cons 1.227778e-02   p_joint 8.257778e-02

Joint ci ratio: 4.271402e-02	ci left: 7.601837e-02	ci right 7.934617e-02	k: 7767	n:100000
Cons ci ratio: 1.106276e-01	ci left: 1.171356e-02	ci right 1.309494e-02	k: 1239	n:100000
KS ci ratio: 1.065825e-02	ci left: 5.718789e-01	ci right 5.780167e-01	k: 57495	n:100000
MYH3   100000 perm   29 sec   (3403 perm/sec)   p_kst 5.749500e-01   p_cons 1.239000e-02   p_joint 7.767000e-02

Joint ci ratio: 4.168271e-02	ci left: 7.286491e-02	ci right 7.597575e-02	k: 8185	n:110000
Cons ci ratio: 1.046283e-01	ci left: 1.194032e-02	ci right 1.326738e-02	k: 1385	n:110000
KS ci ratio: 1.018353e-02	ci left: 5.709985e-01	ci right 5.768521e-01	k: 63132	n:110000
MYH3   110000 perm   33 sec   (3354 perm/sec)   p_kst 5.739273e-01   p_cons 1.259091e-02   p_joint 7.440909e-02

Joint ci ratio: 3.905742e-02	ci left: 7.592715e-02	ci right 7.895997e-02	k: 9292	n:120000
Cons ci ratio: 1.003421e-01	ci left: 1.192778e-02	ci right 1.319593e-02	k: 1506	n:120000
KS ci ratio: 9.757522e-03	ci left: 5.707459e-01	ci right 5.763506e-01	k: 68826	n:120000
MYH3   120000 perm   36 sec   (3307 perm/sec)   p_kst 5.735500e-01   p_cons 1.255000e-02   p_joint 7.743333e-02

Joint ci ratio: 3.731548e-02	ci left: 7.678423e-02	ci right 7.971154e-02	k: 10171	n:130000
Cons ci ratio: 9.609566e-02	ci left: 1.203075e-02	ci right 1.325267e-02	k: 1642	n:130000
KS ci ratio: 9.368467e-03	ci left: 5.711833e-01	ci right 5.765672e-01	k: 74604	n:130000
MYH3   130000 perm   40 sec   (3263 perm/sec)   p_kst 5.738769e-01   p_cons 1.263077e-02   p_joint 7.823846e-02

Outputting figure to mutsig2_images.part000000000110/MYH3.6_5979_130000_0.57388_0.012631_0.078238.png
                gene_name: MYH3
               theta_stop: 0.096 
                    nperm: 130000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.013 
      ci_cons_bounds_left: 0.012 
     ci_cons_bounds_right: 0.013 
                  p_joint: 0.078 
     ci_joint_bounds_left: 0.077 
    ci_joint_bounds_right: 0.080 

Current progress: 47 percent done.
MYO10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.052170e-01	ci left: 3.157898e-02	ci right 3.889501e-02	k: 351	n:10000
Cons ci ratio: 6.990893e-02	ci left: 2.307670e-01	ci right 2.475852e-01	k: 2391	n:10000
KS ci ratio: 2.468251e-01	ci left: 2.155910e-02	ci right 2.772208e-02	k: 245	n:10000
MYO10   10000 perm   2 sec   (4404 perm/sec)   p_kst 2.450000e-02   p_cons 2.391000e-01   p_joint 3.510000e-02

Joint ci ratio: 1.343100e-01	ci left: 3.810025e-02	ci right 4.363424e-02	k: 816	n:20000
Cons ci ratio: 4.950154e-02	ci left: 2.327558e-01	ci right 2.446203e-01	k: 4773	n:20000
KS ci ratio: 1.727444e-01	ci left: 2.292841e-02	ci right 2.731114e-02	k: 501	n:20000
MYO10   20000 perm   5 sec   (4025 perm/sec)   p_kst 2.505000e-02   p_cons 2.386500e-01   p_joint 4.080000e-02

Joint ci ratio: 1.511299e-01	ci left: 2.027360e-02	ci right 2.361987e-02	k: 657	n:30000
Cons ci ratio: 4.052948e-02	ci left: 2.328589e-01	ci right 2.425252e-01	k: 7130	n:30000
KS ci ratio: 1.425090e-01	ci left: 2.284446e-02	ci right 2.638176e-02	k: 737	n:30000
MYO10   30000 perm   8 sec   (3881 perm/sec)   p_kst 2.456667e-02   p_cons 2.376667e-01   p_joint 2.190000e-02

Joint ci ratio: 1.085900e-01	ci left: 2.983424e-02	ci right 3.328421e-02	k: 1261	n:40000
Cons ci ratio: 3.532875e-02	ci left: 2.311747e-01	ci right 2.395137e-01	k: 9413	n:40000
KS ci ratio: 1.249885e-01	ci left: 2.249804e-02	ci right 2.552160e-02	k: 959	n:40000
MYO10   40000 perm   11 sec   (3794 perm/sec)   p_kst 2.397500e-02   p_cons 2.353250e-01   p_joint 3.152500e-02

Joint ci ratio: 1.150784e-01	ci left: 2.137335e-02	ci right 2.400247e-02	k: 1133	n:50000
Cons ci ratio: 3.159288e-02	ci left: 2.316868e-01	ci right 2.391439e-01	k: 11770	n:50000
KS ci ratio: 1.107575e-01	ci left: 2.308476e-02	ci right 2.581084e-02	k: 1221	n:50000
MYO10   50000 perm   13 sec   (3720 perm/sec)   p_kst 2.442000e-02   p_cons 2.354000e-01   p_joint 2.266000e-02

Joint ci ratio: 9.724720e-02	ci left: 2.508298e-02	ci right 2.766311e-02	k: 1581	n:60000
Cons ci ratio: 2.894639e-02	ci left: 2.306999e-01	ci right 2.374925e-01	k: 14045	n:60000
KS ci ratio: 1.011924e-01	ci left: 2.316392e-02	ci right 2.564904e-02	k: 1463	n:60000
MYO10   60000 perm   16 sec   (3656 perm/sec)   p_kst 2.438333e-02   p_cons 2.340833e-01   p_joint 2.635000e-02

Joint ci ratio: 8.085682e-02	ci left: 3.117064e-02	ci right 3.381115e-02	k: 2273	n:70000
Cons ci ratio: 2.678102e-02	ci left: 2.311946e-01	ci right 2.374845e-01	k: 16403	n:70000
KS ci ratio: 9.456949e-02	ci left: 2.282302e-02	ci right 2.510239e-02	k: 1676	n:70000
MYO10   70000 perm   19 sec   (3598 perm/sec)   p_kst 2.394286e-02   p_cons 2.343286e-01   p_joint 3.247143e-02

Outputting figure to mutsig2_images.part000000000110/MYO10.6_6341_70000_0.023943_0.23433_0.032471.png
                gene_name: MYO10
               theta_stop: 0.095 
                    nperm: 70000 
                     p_ks: 0.024 
        ci_ks_bounds_left: 0.023 
       ci_ks_bounds_right: 0.025 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.032 
     ci_joint_bounds_left: 0.031 
    ci_joint_bounds_right: 0.034 

Current progress: 49 percent done.
MYB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.759258e-02	ci left: 3.073885e-01	ci right 3.257185e-01	k: 3165	n:10000
Cons ci ratio: 1.430962e-01	ci left: 6.478500e-02	ci right 7.486734e-02	k: 697	n:10000
KS ci ratio: 2.315671e-02	ci left: 7.325974e-01	ci right 7.498618e-01	k: 7413	n:10000
MYB   10000 perm   2 sec   (5224 perm/sec)   p_kst 7.413000e-01   p_cons 6.970000e-02   p_joint 3.165000e-01

Joint ci ratio: 4.543313e-02	ci left: 2.650472e-01	ci right 2.774194e-01	k: 5424	n:20000
Cons ci ratio: 1.026566e-01	ci left: 6.445142e-02	ci right 7.147482e-02	k: 1358	n:20000
KS ci ratio: 1.747824e-02	ci left: 7.091911e-01	ci right 7.217462e-01	k: 14310	n:20000
MYB   20000 perm   4 sec   (4798 perm/sec)   p_kst 7.155000e-01   p_cons 6.790000e-02   p_joint 2.712000e-01

Joint ci ratio: 2.987948e-02	ci left: 3.590837e-01	ci right 3.700092e-01	k: 10936	n:30000
Cons ci ratio: 8.499966e-02	ci left: 6.337929e-02	ci right 6.903840e-02	k: 1985	n:30000
KS ci ratio: 1.428856e-02	ci left: 7.098545e-01	ci right 7.201038e-01	k: 21450	n:30000
MYB   30000 perm   6 sec   (4638 perm/sec)   p_kst 7.150000e-01   p_cons 6.616667e-02   p_joint 3.645333e-01

Outputting figure to mutsig2_images.part000000000110/MYB.5_2350_30000_0.715_0.066167_0.36453.png
                gene_name: MYB
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.066 
      ci_cons_bounds_left: 0.063 
     ci_cons_bounds_right: 0.069 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 51 percent done.
MYBPC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.671176e-02	ci left: 1.342342e-01	ci right 1.479756e-01	k: 1410	n:10000
Cons ci ratio: 1.656929e-01	ci left: 4.859368e-02	ci right 5.746898e-02	k: 529	n:10000
KS ci ratio: 9.952147e-02	ci left: 1.275764e-01	ci right 1.410375e-01	k: 1342	n:10000
MYBPC3   10000 perm   2 sec   (4740 perm/sec)   p_kst 1.342000e-01   p_cons 5.290000e-02   p_joint 1.410000e-01

Joint ci ratio: 8.625504e-02	ci left: 8.954852e-02	ci right 9.767008e-02	k: 1871	n:20000
Cons ci ratio: 1.136418e-01	ci left: 5.295054e-02	ci right 5.937926e-02	k: 1122	n:20000
KS ci ratio: 6.977457e-02	ci left: 1.315237e-01	ci right 1.410823e-01	k: 2725	n:20000
MYBPC3   20000 perm   5 sec   (4274 perm/sec)   p_kst 1.362500e-01   p_cons 5.610000e-02   p_joint 9.355000e-02

Joint ci ratio: 9.216727e-02	ci left: 5.423979e-02	ci right 5.951310e-02	k: 1705	n:30000
Cons ci ratio: 9.225331e-02	ci left: 5.414196e-02	ci right 5.941095e-02	k: 1702	n:30000
KS ci ratio: 5.665062e-02	ci left: 1.337205e-01	ci right 1.415498e-01	k: 4128	n:30000
MYBPC3   30000 perm   7 sec   (4191 perm/sec)   p_kst 1.376000e-01   p_cons 5.673333e-02   p_joint 5.683333e-02

Outputting figure to mutsig2_images.part000000000110/MYBPC3.5_3954_30000_0.1376_0.056733_0.056833.png
                gene_name: MYBPC3
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.057 
      ci_cons_bounds_left: 0.054 
     ci_cons_bounds_right: 0.059 
                  p_joint: 0.057 
     ci_joint_bounds_left: 0.054 
    ci_joint_bounds_right: 0.060 

Current progress: 53 percent done.
MYEOV
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.364833e-01	ci left: 7.097701e-02	ci right 8.147145e-02	k: 761	n:10000
Cons ci ratio: 4.108126e-02	ci left: 4.666691e-01	ci right 4.863446e-01	k: 4765	n:10000
KS ci ratio: 1.791228e-01	ci left: 4.159407e-02	ci right 4.987317e-02	k: 456	n:10000
MYEOV   10000 perm   2 sec   (6056 perm/sec)   p_kst 4.560000e-02   p_cons 4.765000e-01   p_joint 7.610000e-02

Joint ci ratio: 9.783690e-02	ci left: 7.065356e-02	ci right 7.797078e-02	k: 1485	n:20000
Cons ci ratio: 2.933800e-02	ci left: 4.646612e-01	ci right 4.785470e-01	k: 9432	n:20000
KS ci ratio: 1.272464e-01	ci left: 4.241066e-02	ci right 4.822246e-02	k: 905	n:20000
MYEOV   20000 perm   4 sec   (5456 perm/sec)   p_kst 4.525000e-02   p_cons 4.716000e-01   p_joint 7.425000e-02

Joint ci ratio: 7.434977e-02	ci left: 8.163846e-02	ci right 8.797555e-02	k: 2543	n:30000
Cons ci ratio: 2.397746e-02	ci left: 4.654712e-01	ci right 4.768011e-01	k: 14134	n:30000
KS ci ratio: 1.034592e-01	ci left: 4.329927e-02	ci right 4.805588e-02	k: 1369	n:30000
MYEOV   30000 perm   6 sec   (5213 perm/sec)   p_kst 4.563333e-02   p_cons 4.711333e-01   p_joint 8.476667e-02

Joint ci ratio: 6.311653e-02	ci left: 8.516731e-02	ci right 9.074267e-02	k: 3517	n:40000
Cons ci ratio: 2.085343e-02	ci left: 4.641244e-01	ci right 4.739301e-01	k: 18761	n:40000
KS ci ratio: 8.905511e-02	ci left: 4.413888e-02	ci right 4.827732e-02	k: 1847	n:40000
MYEOV   40000 perm   8 sec   (5051 perm/sec)   p_kst 4.617500e-02   p_cons 4.690250e-01   p_joint 8.792500e-02

Outputting figure to mutsig2_images.part000000000110/MYEOV.5_950_40000_0.046175_0.46903_0.087925.png
                gene_name: MYEOV
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.046 
        ci_ks_bounds_left: 0.044 
       ci_ks_bounds_right: 0.048 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.088 
     ci_joint_bounds_left: 0.085 
    ci_joint_bounds_right: 0.091 

Current progress: 55 percent done.
MUC20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.093456e-02	ci left: 1.495278e-01	ci right 1.638728e-01	k: 1566	n:10000
Cons ci ratio: 1.022198e-01	ci left: 1.216088e-01	ci right 1.348087e-01	k: 1281	n:10000
KS ci ratio: 7.651358e-02	ci left: 1.998838e-01	ci right 2.158868e-01	k: 2078	n:10000
MUC20   10000 perm   2 sec   (5521 perm/sec)   p_kst 2.078000e-01   p_cons 1.281000e-01   p_joint 1.566000e-01

Joint ci ratio: 9.549654e-02	ci left: 7.397763e-02	ci right 8.144569e-02	k: 1553	n:20000
Cons ci ratio: 6.858488e-02	ci left: 1.355636e-01	ci right 1.452412e-01	k: 2807	n:20000
KS ci ratio: 5.383433e-02	ci left: 2.038776e-01	ci right 2.152070e-01	k: 4190	n:20000
MUC20   20000 perm   4 sec   (4968 perm/sec)   p_kst 2.095000e-01   p_cons 1.403500e-01   p_joint 7.765000e-02

Outputting figure to mutsig2_images.part000000000110/MUC20.4_1637_20000_0.2095_0.14035_0.07765.png
                gene_name: MUC20
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.078 
     ci_joint_bounds_left: 0.074 
    ci_joint_bounds_right: 0.081 

Current progress: 57 percent done.
MURC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.797670e-02	ci left: 6.531359e-01	ci right 6.717694e-01	k: 6625	n:10000
KS ci ratio: 6.339508e-03	ci left: 9.713246e-01	ci right 9.775949e-01	k: 9746	n:10000
MURC   10000 perm   2 sec   (5955 perm/sec)   p_kst 9.746000e-01   p_cons 6.625000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000110/MURC.4_1103_10000_0.9746_0.6625_1.png
                gene_name: MURC
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 58 percent done.
MUT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.811568e-02	ci left: 3.035202e-01	ci right 3.217891e-01	k: 3126	n:10000
Cons ci ratio: 9.145415e-02	ci left: 1.480561e-01	ci right 1.623454e-01	k: 1551	n:10000
KS ci ratio: 5.557882e-02	ci left: 3.228692e-01	ci right 3.414287e-01	k: 3321	n:10000
MUT   10000 perm   2 sec   (5420 perm/sec)   p_kst 3.321000e-01   p_cons 1.551000e-01   p_joint 3.126000e-01

Outputting figure to mutsig2_images.part000000000110/MUT.4_2301_10000_0.3321_0.1551_0.3126.png
                gene_name: MUT
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 60 percent done.
MYBL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.913424e-02	ci left: 7.997350e-01	ci right 8.152855e-01	k: 8076	n:10000
Cons ci ratio: 5.081322e-02	ci left: 3.635097e-01	ci right 3.825643e-01	k: 3730	n:10000
KS ci ratio: 1.972923e-02	ci left: 7.898932e-01	ci right 8.057329e-01	k: 7979	n:10000
MYBL1   10000 perm   2 sec   (5625 perm/sec)   p_kst 7.979000e-01   p_cons 3.730000e-01   p_joint 8.076000e-01

Outputting figure to mutsig2_images.part000000000110/MYBL1.4_2323_10000_0.7979_0.373_0.8076.png
                gene_name: MYBL1
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 62 percent done.
MYEF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.446737e-02	ci left: 1.696626e-01	ci right 1.847259e-01	k: 1771	n:10000
Cons ci ratio: 1.265054e-01	ci left: 8.203252e-02	ci right 9.320908e-02	k: 875	n:10000
KS ci ratio: 1.028188e-02	ci left: 9.307143e-01	ci right 9.404301e-01	k: 9357	n:10000
MYEF2   10000 perm   2 sec   (5589 perm/sec)   p_kst 9.357000e-01   p_cons 8.750000e-02   p_joint 1.771000e-01

Joint ci ratio: 4.927785e-02	ci left: 2.343916e-01	ci right 2.462840e-01	k: 4806	n:20000
Cons ci ratio: 8.953869e-02	ci left: 8.352110e-02	ci right 9.139931e-02	k: 1748	n:20000
KS ci ratio: 5.892636e-03	ci left: 9.538902e-01	ci right 9.595761e-01	k: 19136	n:20000
MYEF2   20000 perm   4 sec   (5066 perm/sec)   p_kst 9.568000e-01   p_cons 8.740000e-02   p_joint 2.403000e-01

Outputting figure to mutsig2_images.part000000000110/MYEF2.4_1871_20000_0.9568_0.0874_0.2403.png
                gene_name: MYEF2
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.087 
      ci_cons_bounds_left: 0.084 
     ci_cons_bounds_right: 0.091 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 64 percent done.
MYO18A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.543881e-02	ci left: 5.403863e-01	ci right 5.599845e-01	k: 5502	n:10000
Cons ci ratio: 2.616291e-02	ci left: 6.826450e-01	ci right 7.008432e-01	k: 6918	n:10000
KS ci ratio: 5.973631e-02	ci left: 2.919197e-01	ci right 3.099964e-01	k: 3009	n:10000
MYO18A   10000 perm   2 sec   (4457 perm/sec)   p_kst 3.009000e-01   p_cons 6.918000e-01   p_joint 5.502000e-01

Outputting figure to mutsig2_images.part000000000110/MYO18A.4_6329_10000_0.3009_0.6918_0.5502.png
                gene_name: MYO18A
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 66 percent done.
MYADM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.509389e-02	ci left: 3.267412e-01	ci right 3.453544e-01	k: 3360	n:10000
Cons ci ratio: 4.114718e-02	ci left: 4.658700e-01	ci right 4.855441e-01	k: 4757	n:10000
KS ci ratio: 9.526235e-02	ci left: 1.378591e-01	ci right 1.517485e-01	k: 1447	n:10000
MYADM   10000 perm   2 sec   (6658 perm/sec)   p_kst 1.447000e-01   p_cons 4.757000e-01   p_joint 3.360000e-01

Outputting figure to mutsig2_images.part000000000110/MYADM.3_973_10000_0.1447_0.4757_0.336.png
                gene_name: MYADM
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 68 percent done.
MYL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.424083e-02	ci left: 3.336927e-01	ci right 3.523989e-01	k: 3430	n:10000
Cons ci ratio: 9.445442e-03	ci left: 9.405580e-01	ci right 9.495805e-01	k: 9452	n:10000
KS ci ratio: 5.831909e-02	ci left: 3.020326e-01	ci right 3.202776e-01	k: 3111	n:10000
MYL1   10000 perm   2 sec   (6627 perm/sec)   p_kst 3.111000e-01   p_cons 9.452000e-01   p_joint 3.430000e-01

Outputting figure to mutsig2_images.part000000000110/MYL1.3_645_10000_0.3111_0.9452_0.343.png
                gene_name: MYL1
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 70 percent done.
MYLK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.815110e-02	ci left: 3.888849e-01	ci right 4.081742e-01	k: 3985	n:10000
Cons ci ratio: 2.577713e-02	ci left: 6.889954e-01	ci right 7.070891e-01	k: 6981	n:10000
KS ci ratio: 8.643025e-02	ci left: 1.631759e-01	ci right 1.780165e-01	k: 1705	n:10000
MYLK2   10000 perm   2 sec   (5908 perm/sec)   p_kst 1.705000e-01   p_cons 6.981000e-01   p_joint 3.985000e-01

Outputting figure to mutsig2_images.part000000000110/MYLK2.3_1839_10000_0.1705_0.6981_0.3985.png
                gene_name: MYLK2
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 72 percent done.
MUC21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.286084e-01	ci left: 7.950840e-02	ci right 9.053475e-02	k: 849	n:10000
Cons ci ratio: 1.588454e-01	ci left: 5.282421e-02	ci right 6.203572e-02	k: 573	n:10000
KS ci ratio: 3.081627e-02	ci left: 6.083937e-01	ci right 6.275375e-01	k: 6180	n:10000
MUC21   10000 perm   2 sec   (6334 perm/sec)   p_kst 6.180000e-01   p_cons 5.730000e-02   p_joint 8.490000e-02

Joint ci ratio: 1.170486e-01	ci left: 4.998388e-02	ci right 5.624684e-02	k: 1061	n:20000
Cons ci ratio: 1.125835e-01	ci left: 5.392380e-02	ci right 6.040569e-02	k: 1142	n:20000
KS ci ratio: 2.171771e-02	ci left: 6.128296e-01	ci right 6.263356e-01	k: 12392	n:20000
MUC21   20000 perm   4 sec   (5637 perm/sec)   p_kst 6.196000e-01   p_cons 5.710000e-02   p_joint 5.305000e-02

Joint ci ratio: 8.529901e-02	ci left: 6.295458e-02	ci right 6.859654e-02	k: 1972	n:30000
Cons ci ratio: 9.248383e-02	ci left: 5.388111e-02	ci right 5.913852e-02	k: 1694	n:30000
KS ci ratio: 1.777664e-02	ci left: 6.129085e-01	ci right 6.239352e-01	k: 18553	n:30000
MUC21   30000 perm   6 sec   (5375 perm/sec)   p_kst 6.184333e-01   p_cons 5.646667e-02   p_joint 6.573333e-02

Outputting figure to mutsig2_images.part000000000110/MUC21.2_1713_30000_0.61843_0.056467_0.065733.png
                gene_name: MUC21
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.056 
      ci_cons_bounds_left: 0.054 
     ci_cons_bounds_right: 0.059 
                  p_joint: 0.066 
     ci_joint_bounds_left: 0.063 
    ci_joint_bounds_right: 0.069 

Current progress: 74 percent done.
MUC7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.805087e-02	ci left: 5.049514e-01	ci right 5.246400e-01	k: 5148	n:10000
Cons ci ratio: 5.213117e-02	ci left: 3.516775e-01	ci right 3.706035e-01	k: 3611	n:10000
KS ci ratio: 3.049740e-02	ci left: 6.133161e-01	ci right 6.324122e-01	k: 6229	n:10000
MUC7   10000 perm   2 sec   (6498 perm/sec)   p_kst 6.229000e-01   p_cons 3.611000e-01   p_joint 5.148000e-01

Outputting figure to mutsig2_images.part000000000110/MUC7.2_1142_10000_0.6229_0.3611_0.5148.png
                gene_name: MUC7
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 75 percent done.
MUM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.499456e-02	ci left: 8.657021e-01	ci right 8.788802e-01	k: 8724	n:10000
Cons ci ratio: 1.494067e-02	ci left: 8.665194e-01	ci right 8.796624e-01	k: 8732	n:10000
KS ci ratio: 7.266726e-02	ci left: 2.171426e-01	ci right 2.336177e-01	k: 2253	n:10000
MUM1   10000 perm   2 sec   (6210 perm/sec)   p_kst 2.253000e-01   p_cons 8.732000e-01   p_joint 8.724000e-01

Outputting figure to mutsig2_images.part000000000110/MUM1.2_2188_10000_0.2253_0.8732_0.8724.png
                gene_name: MUM1
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 77 percent done.
MUSK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.082595e-02	ci left: 9.239968e-01	ci right 9.341516e-01	k: 9292	n:10000
Cons ci ratio: 4.875899e-02	ci left: 3.829118e-01	ci right 4.021508e-01	k: 3925	n:10000
KS ci ratio: 1.477164e-02	ci left: 8.690740e-01	ci right 8.821063e-01	k: 8757	n:10000
MUSK   10000 perm   2 sec   (5747 perm/sec)   p_kst 8.757000e-01   p_cons 3.925000e-01   p_joint 9.292000e-01

Outputting figure to mutsig2_images.part000000000110/MUSK.2_2702_10000_0.8757_0.3925_0.9292.png
                gene_name: MUSK
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 79 percent done.
MUTYH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.392995e-02	ci left: 4.334314e-01	ci right 4.530017e-01	k: 4432	n:10000
Cons ci ratio: 2.022577e-01	ci left: 3.252956e-02	ci right 3.994377e-02	k: 361	n:10000
KS ci ratio: 2.722332e-02	ci left: 6.653172e-01	ci right 6.837810e-01	k: 6746	n:10000
MUTYH   10000 perm   2 sec   (6483 perm/sec)   p_kst 6.746000e-01   p_cons 3.610000e-02   p_joint 4.432000e-01

Joint ci ratio: 6.014120e-02	ci left: 1.699047e-01	ci right 1.804899e-01	k: 3503	n:20000
Cons ci ratio: 1.503973e-01	ci left: 3.037464e-02	ci right 3.536238e-02	k: 656	n:20000
KS ci ratio: 1.929433e-02	ci left: 6.670517e-01	ci right 6.800978e-01	k: 13472	n:20000
MUTYH   20000 perm   3 sec   (5803 perm/sec)   p_kst 6.736000e-01   p_cons 3.280000e-02   p_joint 1.751500e-01

Joint ci ratio: 4.799636e-02	ci left: 1.775160e-01	ci right 1.862790e-01	k: 5456	n:30000
Cons ci ratio: 1.459945e-01	ci left: 2.175113e-02	ci right 2.520867e-02	k: 703	n:30000
KS ci ratio: 1.572887e-02	ci left: 6.689636e-01	ci right 6.796026e-01	k: 20229	n:30000
MUTYH   30000 perm   5 sec   (5533 perm/sec)   p_kst 6.743000e-01   p_cons 2.343333e-02   p_joint 1.818667e-01

Joint ci ratio: 4.933849e-02	ci left: 1.329269e-01	ci right 1.396760e-01	k: 5451	n:40000
Cons ci ratio: 1.268976e-01	ci left: 2.181961e-02	ci right 2.480015e-02	k: 931	n:40000
KS ci ratio: 1.360075e-02	ci left: 6.703598e-01	ci right 6.795647e-01	k: 26999	n:40000
MUTYH   40000 perm   7 sec   (5339 perm/sec)   p_kst 6.749750e-01   p_cons 2.327500e-02   p_joint 1.362750e-01

Joint ci ratio: 3.806858e-02	ci left: 1.716189e-01	ci right 1.782989e-01	k: 8747	n:50000
Cons ci ratio: 1.118412e-01	ci left: 2.263727e-02	ci right 2.533838e-02	k: 1198	n:50000
KS ci ratio: 1.223360e-02	ci left: 6.683665e-01	ci right 6.766134e-01	k: 33625	n:50000
MUTYH   50000 perm   10 sec   (5189 perm/sec)   p_kst 6.725000e-01   p_cons 2.396000e-02   p_joint 1.749400e-01

Joint ci ratio: 3.375173e-02	ci left: 1.804429e-01	ci right 1.866544e-01	k: 11012	n:60000
Cons ci ratio: 1.023814e-01	ci left: 2.262760e-02	ci right 2.508542e-02	k: 1430	n:60000
KS ci ratio: 1.114703e-02	ci left: 6.695473e-01	ci right 6.770693e-01	k: 40399	n:60000
MUTYH   60000 perm   12 sec   (5069 perm/sec)   p_kst 6.733167e-01   p_cons 2.383333e-02   p_joint 1.835333e-01

Joint ci ratio: 4.245729e-02	ci left: 1.062476e-01	ci right 1.108706e-01	k: 7598	n:70000
Cons ci ratio: 9.494721e-02	ci left: 2.264160e-02	ci right 2.491240e-02	k: 1663	n:70000
KS ci ratio: 1.031519e-02	ci left: 6.700405e-01	ci right 6.770022e-01	k: 47147	n:70000
MUTYH   70000 perm   14 sec   (4956 perm/sec)   p_kst 6.735286e-01   p_cons 2.375714e-02   p_joint 1.085429e-01

Outputting figure to mutsig2_images.part000000000110/MUTYH.2_1714_70000_0.67353_0.023757_0.10854.png
                gene_name: MUTYH
               theta_stop: 0.095 
                    nperm: 70000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.024 
      ci_cons_bounds_left: 0.023 
     ci_cons_bounds_right: 0.025 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 81 percent done.
MVP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.618316e-02	ci left: 2.510282e-01	ci right 2.683120e-01	k: 2596	n:10000
KS ci ratio: 2.807683e-02	ci left: 6.515256e-01	ci right 6.701806e-01	k: 6609	n:10000
MVP   10000 perm   2 sec   (5859 perm/sec)   p_kst 6.609000e-01   p_cons 2.596000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000110/MVP.2_2738_10000_0.6609_0.2596_1.png
                gene_name: MVP
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
MX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.020443e-03	ci left: 9.558684e-01	ci right 9.636608e-01	k: 9599	n:10000
Cons ci ratio: 1.986367e-02	ci left: 7.876620e-01	ci right 8.035654e-01	k: 7957	n:10000
KS ci ratio: 3.699097e-02	ci left: 5.190593e-01	ci right 5.387238e-01	k: 5289	n:10000
MX2   10000 perm   2 sec   (5936 perm/sec)   p_kst 5.289000e-01   p_cons 7.957000e-01   p_joint 9.599000e-01

Outputting figure to mutsig2_images.part000000000110/MX2.2_2200_10000_0.5289_0.7957_0.9599.png
                gene_name: MX2
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.96 

Current progress: 85 percent done.
MYBBP1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.341629e-02	ci left: 7.282528e-01	ci right 7.456090e-01	k: 7370	n:10000
KS ci ratio: 6.518270e-02	ci left: 2.568641e-01	ci right 2.742727e-01	k: 2655	n:10000
MYBBP1A   10000 perm   2 sec   (5286 perm/sec)   p_kst 2.655000e-01   p_cons 7.370000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000110/MYBBP1A.2_4131_10000_0.2655_0.737_1.png
                gene_name: MYBBP1A
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
MYBPH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.802049e-02	ci left: 6.524314e-01	ci right 6.710743e-01	k: 6618	n:10000
Cons ci ratio: 9.454540e-03	ci left: 9.404542e-01	ci right 9.494843e-01	k: 9451	n:10000
KS ci ratio: 5.631335e-02	ci left: 3.171122e-01	ci right 3.355890e-01	k: 3263	n:10000
MYBPH   10000 perm   2 sec   (6388 perm/sec)   p_kst 3.263000e-01   p_cons 9.451000e-01   p_joint 6.618000e-01

Outputting figure to mutsig2_images.part000000000110/MYBPH.2_1474_10000_0.3263_0.9451_0.6618.png
                gene_name: MYBPH
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 89 percent done.
MYCBPAP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.308130e-03	ci left: 9.421155e-01	ci right 9.510221e-01	k: 9467	n:10000
Cons ci ratio: 1.079305e-02	ci left: 9.244098e-01	ci right 9.345383e-01	k: 9296	n:10000
KS ci ratio: 2.349480e-02	ci left: 7.269395e-01	ci right 7.443230e-01	k: 7357	n:10000
MYCBPAP   10000 perm   2 sec   (5780 perm/sec)   p_kst 7.357000e-01   p_cons 9.296000e-01   p_joint 9.467000e-01

Outputting figure to mutsig2_images.part000000000110/MYCBPAP.2_3031_10000_0.7357_0.9296_0.9467.png
                gene_name: MYCBPAP
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 91 percent done.
MYL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.182757e-02	ci left: 3.543616e-01	ci right 3.733178e-01	k: 3638	n:10000
KS ci ratio: 8.215927e-03	ci left: 9.538829e-01	ci right 9.618476e-01	k: 9580	n:10000
MYL2   10000 perm   1 sec   (6909 perm/sec)   p_kst 9.580000e-01   p_cons 3.638000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000110/MYL2.2_529_10000_0.958_0.3638_1.png
                gene_name: MYL2
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
MYL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.048516e-02	ci left: 9.282324e-01	ci right 9.381134e-01	k: 9333	n:10000
KS ci ratio: 2.698187e-02	ci left: 6.692450e-01	ci right 6.876510e-01	k: 6785	n:10000
MYL3   10000 perm   1 sec   (6785 perm/sec)   p_kst 6.785000e-01   p_cons 9.333000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000110/MYL3.2_612_10000_0.6785_0.9333_1.png
                gene_name: MYL3
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
MYLIP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.687951e-02	ci left: 4.017322e-01	ci right 4.211194e-01	k: 4114	n:10000
KS ci ratio: 8.357525e-03	ci left: 9.524213e-01	ci right 9.605100e-01	k: 9566	n:10000
MYLIP   10000 perm   2 sec   (6374 perm/sec)   p_kst 9.566000e-01   p_cons 4.114000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000110/MYLIP.2_1366_10000_0.9566_0.4114_1.png
                gene_name: MYLIP
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
MYLK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.077029e-02	ci left: 7.725604e-01	ci right 7.888758e-01	k: 7808	n:10000
KS ci ratio: 1.763529e-02	ci left: 8.242208e-01	ci right 8.389855e-01	k: 8317	n:10000
MYLK3   10000 perm   2 sec   (5841 perm/sec)   p_kst 8.317000e-01   p_cons 7.808000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000110/MYLK3.2_2512_10000_0.8317_0.7808_1.png
                gene_name: MYLK3
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
MYNN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.461427e-02	ci left: 7.082607e-01	ci right 7.260126e-01	k: 7172	n:10000
KS ci ratio: 1.442374e-02	ci left: 8.742881e-01	ci right 8.870892e-01	k: 8808	n:10000
MYNN   10000 perm   2 sec   (6097 perm/sec)   p_kst 8.808000e-01   p_cons 7.172000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000110/MYNN.2_1861_10000_0.8808_0.7172_1.png
                gene_name: MYNN
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000110
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 110 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1726>
Subject: Job 8004295: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1726>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000111> was used as the working directory.
Started at Sun Nov 11 15:09:02 2012
Results reported at Sun Nov 11 15:16:26 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000111.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000111.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 111  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000111.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    446.48 sec.
    Max Memory :      4753 MB
    Max Swap   :      7124 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
111
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 111
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 111: processing genes 9953 - 10042
Calculating significance of each gene.
Using projection method.
9953	MYO18B	9.995569e-01
9954	MYO19	9.858446e-01
9955	MYO1A	8.937156e-01
9956	MYO1B	1
9957	MYO1C	9.908169e-01
9958	MYO1D	6.853946e-01
9959	MYO1E	7.379120e-01
9960	MYO1F	4.225122e-01
9961	MYO1G	8.097514e-01
9962	MYO1H	1
9963	MYO3A	4.307385e-01
9964	MYO3B	9.590456e-01
9965	MYO5A	9.986129e-01
9966	MYO5B	9.991604e-01
9967	MYO5C	1
9968	MYO6	9.834241e-01
9969	MYO7A	9.951734e-01
9970	MYO7B	9.943519e-01
9971	MYO9A	9.443869e-01
9972	MYO9B	8.458822e-01
9973	MYOC	5.303356e-01
9974	MYOCD	6.007851e-01
9975	MYOD1	1
9976	MYOF	9.979950e-01
9977	MYOG	1
9978	MYOM1	9.562398e-01
9979	MYOM2	9.299338e-01
9980	MYOM3	9.943965e-01
9981	MYOT	2.718625e-01
9982	MYOZ1	4.536144e-01
9983	MYOZ2	3.150583e-01
9984	MYOZ3	1
9985	MYPN	9.368613e-01
9986	MYPOP	1
9987	MYRIP	1
9988	MYSM1	7.752682e-01
9989	MYST1	5.098957e-01
9990	MYST2	2.590407e-01
9991	MYST3	9.838072e-01
9992	MYST4	9.902228e-01
9993	MYT1	9.863350e-01
9994	MYT1L	8.872225e-01
9995	MZF1	9.082791e-01
9996	N4BP1	3.721035e-01
9997	N4BP2	1
9998	N4BP2L1	1
9999	N4BP2L2	7.584612e-01
10000/18094 10000	N4BP3	1
10001	N6AMT1	5.665841e-01
10002	N6AMT2	4.539382e-01
10003	NAA10	1.376546e-01
10004	NAA11	1.942680e-01
10005	NAA15	8.992607e-01
10006	NAA16	1
10007	NAA20	1
10008	NAA25	8.095452e-01
10009	NAA30	6.224153e-02
10010	NAA35	8.916546e-01
10011	NAA38	1.187494e-03
10012	NAA40	5.001736e-01
10013	NAA50	1
10014	NAAA	7.861973e-01
10015	NAALAD2	1.778096e-01
10016	NAALADL1	4.409450e-01
10017	NAALADL2	1
10018	NAB1	1
10019	NAB2	7.970886e-01
10020	NACA	1
10021	NACA2	9.644827e-02
10022	NACC1	1
10023	NACC2	1
10024	NADK	8.526484e-01
10025	NADSYN1	2.639258e-02
10026	NAE1	1
10027	NAF1	7.611204e-01
10028	NAGA	6.826809e-01
10029	NAGK	1
10030	NAGLU	1
10031	NAGPA	1
10032	NAGS	4.355252e-01
10033	NAIF1	5.801254e-01
10034	NALCN	9.440041e-01
10035	NAMPT	2.817694e-01
10036	NANOG	3.067476e-01
10037	NANOS2	1
10038	NANOS3	1
10039	NANP	1
10040	NANS	1
10041	NAP1L1	1
10042	NAP1L2	8.163471e-03
Done

Running MutSig 2:
Scatter job 111: processing genes 9953 - 10042
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
MYO18B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.651866e-02	ci left: 5.254655e-01	ci right 5.451139e-01	k: 5353	n:10000
Cons ci ratio: 1.750290e-02	ci left: 8.263569e-01	ci right 8.410482e-01	k: 8338	n:10000
KS ci ratio: 5.812920e-02	ci left: 3.034210e-01	ci right 3.216883e-01	k: 3125	n:10000
MYO18B   10000 perm   3 sec   (3995 perm/sec)   p_kst 3.125000e-01   p_cons 8.338000e-01   p_joint 5.353000e-01

Outputting figure to mutsig2_images.part000000000111/MYO18B.19_7872_10000_0.3125_0.8338_0.5353.png
                gene_name: MYO18B
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 2 percent done.
MYT1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.883525e-02	ci left: 4.947505e-01	ci right 5.144469e-01	k: 5046	n:10000
Cons ci ratio: 3.688720e-02	ci left: 5.204606e-01	ci right 5.401218e-01	k: 5303	n:10000
KS ci ratio: 4.813102e-02	ci left: 3.890841e-01	ci right 4.083750e-01	k: 3987	n:10000
MYT1L   10000 perm   2 sec   (4890 perm/sec)   p_kst 3.987000e-01   p_cons 5.303000e-01   p_joint 5.046000e-01

Outputting figure to mutsig2_images.part000000000111/MYT1L.19_3635_10000_0.3987_0.5303_0.5046.png
                gene_name: MYT1L
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 4 percent done.
NALCN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.196701e-02	ci left: 2.768594e-01	ci right 2.946656e-01	k: 2857	n:10000
Cons ci ratio: 1.717362e-02	ci left: 8.316480e-01	ci right 8.461540e-01	k: 8390	n:10000
KS ci ratio: 7.800821e-02	ci left: 1.936760e-01	ci right 2.094982e-01	k: 2015	n:10000
NALCN   10000 perm   2 sec   (4318 perm/sec)   p_kst 2.015000e-01   p_cons 8.390000e-01   p_joint 2.857000e-01

Outputting figure to mutsig2_images.part000000000111/NALCN.17_5389_10000_0.2015_0.839_0.2857.png
                gene_name: NALCN
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 6 percent done.
MYPN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.957624e-02	ci left: 7.924290e-01	ci right 8.081956e-01	k: 8004	n:10000
Cons ci ratio: 4.771208e-02	ci left: 3.932662e-01	ci right 4.125904e-01	k: 4029	n:10000
KS ci ratio: 2.989677e-02	ci left: 6.226615e-01	ci right 6.416614e-01	k: 6322	n:10000
MYPN   10000 perm   2 sec   (5357 perm/sec)   p_kst 6.322000e-01   p_cons 4.029000e-01   p_joint 8.004000e-01

Outputting figure to mutsig2_images.part000000000111/MYPN.15_4039_10000_0.6322_0.4029_0.8004.png
                gene_name: MYPN
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 8 percent done.
MYO3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.024491e-01	ci left: 1.211198e-01	ci right 1.342979e-01	k: 1276	n:10000
Cons ci ratio: 7.830018e-02	ci left: 1.924939e-01	ci right 2.082810e-01	k: 2003	n:10000
KS ci ratio: 1.054030e-01	ci left: 1.150598e-01	ci right 1.279615e-01	k: 1214	n:10000
MYO3A   10000 perm   2 sec   (4967 perm/sec)   p_kst 1.214000e-01   p_cons 2.003000e-01   p_joint 1.276000e-01

Joint ci ratio: 6.662371e-02	ci left: 1.426120e-01	ci right 1.524907e-01	k: 2950	n:20000
Cons ci ratio: 5.562776e-02	ci left: 1.933374e-01	ci right 2.044502e-01	k: 3977	n:20000
KS ci ratio: 7.605461e-02	ci left: 1.127730e-01	ci right 1.217386e-01	k: 2344	n:20000
MYO3A   20000 perm   4 sec   (4537 perm/sec)   p_kst 1.172000e-01   p_cons 1.988500e-01   p_joint 1.475000e-01

Outputting figure to mutsig2_images.part000000000111/MYO3A.11_4983_20000_0.1172_0.19885_0.1475.png
                gene_name: MYO3A
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 9 percent done.
MYOM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.884446e-02	ci left: 8.045063e-01	ci right 8.199113e-01	k: 8123	n:10000
Cons ci ratio: 1.385488e-02	ci left: 8.826795e-01	ci right 8.950929e-01	k: 8890	n:10000
KS ci ratio: 4.199803e-02	ci left: 4.556848e-01	ci right 4.753353e-01	k: 4655	n:10000
MYOM1   10000 perm   2 sec   (5053 perm/sec)   p_kst 4.655000e-01   p_cons 8.890000e-01   p_joint 8.123000e-01

Outputting figure to mutsig2_images.part000000000111/MYOM1.11_5206_10000_0.4655_0.889_0.8123.png
                gene_name: MYOM1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 11 percent done.
MYST3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.375324e-02	ci left: 1.417796e-01	ci right 1.558256e-01	k: 1487	n:10000
Cons ci ratio: 8.511018e-02	ci left: 1.674999e-01	ci right 1.824899e-01	k: 1749	n:10000
KS ci ratio: 7.496836e-02	ci left: 2.065875e-01	ci right 2.227791e-01	k: 2146	n:10000
MYST3   10000 perm   2 sec   (4514 perm/sec)   p_kst 2.146000e-01   p_cons 1.749000e-01   p_joint 1.487000e-01

Outputting figure to mutsig2_images.part000000000111/MYST3.11_6079_10000_0.2146_0.1749_0.1487.png
                gene_name: MYST3
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.16 

Current progress: 13 percent done.
MYOCD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.224134e-02	ci left: 2.750767e-01	ci right 2.928493e-01	k: 2839	n:10000
Cons ci ratio: 1.504835e-02	ci left: 8.648849e-01	ci right 8.780979e-01	k: 8716	n:10000
KS ci ratio: 9.038799e-02	ci left: 1.510978e-01	ci right 1.655018e-01	k: 1582	n:10000
MYOCD   10000 perm   2 sec   (5553 perm/sec)   p_kst 1.582000e-01   p_cons 8.716000e-01   p_joint 2.839000e-01

Outputting figure to mutsig2_images.part000000000111/MYOCD.10_3029_10000_0.1582_0.8716_0.2839.png
                gene_name: MYOCD
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 15 percent done.
MYO7B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.419792e-02	ci left: 4.304391e-01	ci right 4.499957e-01	k: 4402	n:10000
Cons ci ratio: 5.142700e-02	ci left: 3.579408e-01	ci right 3.769365e-01	k: 3674	n:10000
KS ci ratio: 4.995533e-02	ci left: 3.714676e-01	ci right 3.906018e-01	k: 3810	n:10000
MYO7B   10000 perm   2 sec   (4748 perm/sec)   p_kst 3.810000e-01   p_cons 3.674000e-01   p_joint 4.402000e-01

Outputting figure to mutsig2_images.part000000000111/MYO7B.9_6535_10000_0.381_0.3674_0.4402.png
                gene_name: MYO7B
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 17 percent done.
MYOM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.544893e-02	ci left: 8.587584e-01	ci right 8.722279e-01	k: 8656	n:10000
Cons ci ratio: 5.836740e-03	ci left: 9.753575e-01	ci right 9.811593e-01	k: 9784	n:10000
KS ci ratio: 2.974911e-02	ci left: 6.249733e-01	ci right 6.439483e-01	k: 6345	n:10000
MYOM2   10000 perm   2 sec   (4996 perm/sec)   p_kst 6.345000e-01   p_cons 9.784000e-01   p_joint 8.656000e-01

Outputting figure to mutsig2_images.part000000000111/MYOM2.9_4542_10000_0.6345_0.9784_0.8656.png
                gene_name: MYOM2
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 19 percent done.
NAALAD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.553251e-02	ci left: 1.371732e-01	ci right 1.510349e-01	k: 1440	n:10000
Cons ci ratio: 2.937187e-02	ci left: 6.309046e-01	ci right 6.498135e-01	k: 6404	n:10000
KS ci ratio: 1.509149e-01	ci left: 5.841227e-02	ci right 6.804410e-02	k: 631	n:10000
NAALAD2   10000 perm   2 sec   (5896 perm/sec)   p_kst 6.310000e-02   p_cons 6.404000e-01   p_joint 1.440000e-01

Joint ci ratio: 7.164200e-02	ci left: 1.255159e-01	ci right 1.348919e-01	k: 2603	n:20000
Cons ci ratio: 2.102996e-02	ci left: 6.279323e-01	ci right 6.413285e-01	k: 12693	n:20000
KS ci ratio: 1.050398e-01	ci left: 6.167058e-02	ci right 6.855652e-02	k: 1301	n:20000
NAALAD2   20000 perm   4 sec   (5341 perm/sec)   p_kst 6.505000e-02   p_cons 6.346500e-01   p_joint 1.301500e-01

Joint ci ratio: 5.408694e-02	ci left: 1.449551e-01	ci right 1.530464e-01	k: 4469	n:30000
Cons ci ratio: 1.714463e-02	ci left: 6.298905e-01	ci right 6.408166e-01	k: 19061	n:30000
KS ci ratio: 9.016690e-02	ci left: 5.658822e-02	ci right 6.196420e-02	k: 1777	n:30000
NAALAD2   30000 perm   6 sec   (5119 perm/sec)   p_kst 5.923333e-02   p_cons 6.353667e-01   p_joint 1.489667e-01

Outputting figure to mutsig2_images.part000000000111/NAALAD2.9_2299_30000_0.059233_0.63537_0.14897.png
                gene_name: NAALAD2
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.059 
        ci_ks_bounds_left: 0.057 
       ci_ks_bounds_right: 0.062 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 21 percent done.
MYO9A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.530263e-02	ci left: 8.610043e-01	ci right 8.743807e-01	k: 8678	n:10000
Cons ci ratio: 4.295548e-02	ci left: 4.445057e-01	ci right 4.641209e-01	k: 4543	n:10000
KS ci ratio: 1.809304e-02	ci left: 8.167986e-01	ci right 8.318120e-01	k: 8244	n:10000
MYO9A   10000 perm   2 sec   (4388 perm/sec)   p_kst 8.244000e-01   p_cons 4.543000e-01   p_joint 8.678000e-01

Outputting figure to mutsig2_images.part000000000111/MYO9A.7_7811_10000_0.8244_0.4543_0.8678.png
                gene_name: MYO9A
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 23 percent done.
NADSYN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.164863e-03	ci left: 9.544052e-01	ci right 9.623250e-01	k: 9585	n:10000
KS ci ratio: 8.595771e-03	ci left: 9.499184e-01	ci right 9.582145e-01	k: 9542	n:10000
NADSYN1   10000 perm   2 sec   (5729 perm/sec)   p_kst 9.542000e-01   p_cons 9.585000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000111/NADSYN1.7_2205_10000_0.9542_0.9585_1.png
                gene_name: NADSYN1
               theta_stop: 0.0086 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 25 percent done.
NAP1L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.673668e-01	ci left: 4.763334e-02	ci right 5.642994e-02	k: 519	n:10000
Cons ci ratio: 4.067840e-01	ci left: 7.332900e-03	ci right 1.116119e-02	k: 91	n:10000
KS ci ratio: 3.533871e-02	ci left: 5.417887e-01	ci right 5.613813e-01	k: 5516	n:10000
NAP1L2   10000 perm   2 sec   (6423 perm/sec)   p_kst 5.516000e-01   p_cons 9.100000e-03   p_joint 5.190000e-02

Joint ci ratio: 1.140188e-01	ci left: 5.260997e-02	ci right 5.901994e-02	k: 1115	n:20000
Cons ci ratio: 2.837806e-01	ci left: 8.109344e-03	ci right 1.083612e-02	k: 188	n:20000
KS ci ratio: 2.538124e-02	ci left: 5.369663e-01	ci right 5.508210e-01	k: 10878	n:20000
NAP1L2   20000 perm   3 sec   (5784 perm/sec)   p_kst 5.439000e-01   p_cons 9.400000e-03   p_joint 5.575000e-02

Joint ci ratio: 8.385242e-02	ci left: 6.504582e-02	ci right 7.077154e-02	k: 2036	n:30000
Cons ci ratio: 2.298730e-01	ci left: 8.496207e-03	ci right 1.073364e-02	k: 287	n:30000
KS ci ratio: 2.073112e-02	ci left: 5.380764e-01	ci right 5.493818e-01	k: 16312	n:30000
NAP1L2   30000 perm   5 sec   (5469 perm/sec)   p_kst 5.437333e-01   p_cons 9.566667e-03   p_joint 6.786667e-02

Joint ci ratio: 6.863455e-02	ci left: 7.280628e-02	ci right 7.800556e-02	k: 3015	n:40000
Cons ci ratio: 1.990767e-01	ci left: 8.643905e-03	ci right 1.057829e-02	k: 383	n:40000
KS ci ratio: 1.813220e-02	ci left: 5.339247e-01	ci right 5.437196e-01	k: 21553	n:40000
NAP1L2   40000 perm   8 sec   (5310 perm/sec)   p_kst 5.388250e-01   p_cons 9.575000e-03   p_joint 7.537500e-02

Joint ci ratio: 6.276794e-02	ci left: 7.008424e-02	ci right 7.464556e-02	k: 3617	n:50000
Cons ci ratio: 1.754940e-01	ci left: 9.012485e-03	ci right 1.076512e-02	k: 493	n:50000
KS ci ratio: 1.626264e-02	ci left: 5.330776e-01	ci right 5.418380e-01	k: 26873	n:50000
NAP1L2   50000 perm   10 sec   (5178 perm/sec)   p_kst 5.374600e-01   p_cons 9.860000e-03   p_joint 7.234000e-02

Joint ci ratio: 6.030776e-02	ci left: 6.379600e-02	ci right 6.777946e-02	k: 3946	n:60000
Cons ci ratio: 1.600401e-01	ci left: 9.107247e-03	ci right 1.070736e-02	k: 593	n:60000
KS ci ratio: 1.485352e-02	ci left: 5.332003e-01	ci right 5.411961e-01	k: 32232	n:60000
NAP1L2   60000 perm   12 sec   (5066 perm/sec)   p_kst 5.372000e-01   p_cons 9.883333e-03   p_joint 6.576667e-02

Joint ci ratio: 6.532201e-02	ci left: 4.732805e-02	ci right 5.053804e-02	k: 3424	n:70000
Cons ci ratio: 1.509429e-01	ci left: 8.822145e-03	ci right 1.027609e-02	k: 667	n:70000
KS ci ratio: 1.378258e-02	ci left: 5.323828e-01	ci right 5.397856e-01	k: 37526	n:70000
NAP1L2   70000 perm   14 sec   (4962 perm/sec)   p_kst 5.360857e-01   p_cons 9.528571e-03   p_joint 4.891429e-02

Joint ci ratio: 6.186548e-02	ci left: 4.630718e-02	ci right 4.927573e-02	k: 3822	n:80000
Cons ci ratio: 1.422734e-01	ci left: 8.730853e-03	ci right 1.008008e-02	k: 751	n:80000
KS ci ratio: 1.218133e-02	ci left: 5.607179e-01	ci right 5.676025e-01	k: 45133	n:80000
NAP1L2   80000 perm   16 sec   (4864 perm/sec)   p_kst 5.641625e-01   p_cons 9.387500e-03   p_joint 4.777500e-02

Joint ci ratio: 5.948302e-02	ci left: 4.466239e-02	ci right 4.741141e-02	k: 4142	n:90000
Cons ci ratio: 1.335800e-01	ci left: 8.844316e-03	ci right 1.012093e-02	k: 852	n:90000
KS ci ratio: 1.146203e-02	ci left: 5.618869e-01	ci right 5.683755e-01	k: 50862	n:90000
NAP1L2   90000 perm   19 sec   (4775 perm/sec)   p_kst 5.651333e-01   p_cons 9.466667e-03   p_joint 4.602222e-02

Joint ci ratio: 6.227694e-02	ci left: 3.692189e-02	ci right 3.930499e-02	k: 3810	n:100000
Cons ci ratio: 1.260407e-01	ci left: 8.975843e-03	ci right 1.019286e-02	k: 957	n:100000
KS ci ratio: 1.090094e-02	ci left: 5.608296e-01	ci right 5.669867e-01	k: 56391	n:100000
NAP1L2   100000 perm   21 sec   (4690 perm/sec)   p_kst 5.639100e-01   p_cons 9.570000e-03   p_joint 3.810000e-02

Joint ci ratio: 5.749486e-02	ci left: 3.937851e-02	ci right 4.171852e-02	k: 4459	n:110000
Cons ci ratio: 1.201061e-01	ci left: 9.014546e-03	ci right 1.017517e-02	k: 1054	n:110000
KS ci ratio: 1.038829e-02	ci left: 5.612271e-01	ci right 5.670968e-01	k: 62058	n:110000
NAP1L2   110000 perm   24 sec   (4611 perm/sec)   p_kst 5.641636e-01   p_cons 9.581818e-03   p_joint 4.053636e-02

Joint ci ratio: 5.363484e-02	ci left: 4.147249e-02	ci right 4.376635e-02	k: 5113	n:120000
Cons ci ratio: 1.157009e-01	ci left: 8.926493e-03	ci right 1.003074e-02	k: 1136	n:120000
KS ci ratio: 9.933006e-03	ci left: 5.619975e-01	ci right 5.676160e-01	k: 67777	n:120000
NAP1L2   120000 perm   26 sec   (4533 perm/sec)   p_kst 5.648083e-01   p_cons 9.466667e-03   p_joint 4.260833e-02

Joint ci ratio: 5.191938e-02	ci left: 4.091599e-02	ci right 4.310450e-02	k: 5460	n:130000
Cons ci ratio: 1.110141e-01	ci left: 8.972327e-03	ci right 1.003434e-02	k: 1234	n:130000
KS ci ratio: 9.555445e-03	ci left: 5.614839e-01	ci right 5.668825e-01	k: 73344	n:130000
NAP1L2   130000 perm   29 sec   (4463 perm/sec)   p_kst 5.641846e-01   p_cons 9.492308e-03   p_joint 4.200000e-02

Joint ci ratio: 5.396965e-02	ci left: 3.533336e-02	ci right 3.730019e-02	k: 5083	n:140000
Cons ci ratio: 1.037183e-01	ci left: 9.575865e-03	ci right 1.063029e-02	k: 1413	n:140000
KS ci ratio: 9.198484e-03	ci left: 5.620837e-01	ci right 5.672850e-01	k: 79056	n:140000
NAP1L2   140000 perm   32 sec   (4393 perm/sec)   p_kst 5.646857e-01   p_cons 1.009286e-02   p_joint 3.630714e-02

Joint ci ratio: 5.113564e-02	ci left: 3.673513e-02	ci right 3.866945e-02	k: 5654	n:150000
Cons ci ratio: 1.040885e-01	ci left: 8.878866e-03	ci right 9.860239e-03	k: 1404	n:150000
KS ci ratio: 8.882713e-03	ci left: 5.623865e-01	ci right 5.674110e-01	k: 84735	n:150000
NAP1L2   150000 perm   35 sec   (4322 perm/sec)   p_kst 5.649000e-01   p_cons 9.360000e-03   p_joint 3.769333e-02

Joint ci ratio: 4.993493e-02	ci left: 3.616063e-02	ci right 3.801869e-02	k: 5933	n:160000
Cons ci ratio: 1.008740e-01	ci left: 8.878110e-03	ci right 9.827297e-03	k: 1495	n:160000
KS ci ratio: 8.595188e-03	ci left: 5.627792e-01	ci right 5.676435e-01	k: 90434	n:160000
NAP1L2   160000 perm   38 sec   (4255 perm/sec)   p_kst 5.652125e-01   p_cons 9.343750e-03   p_joint 3.708125e-02

Joint ci ratio: 5.123930e-02	ci left: 3.242890e-02	ci right 3.414001e-02	k: 5657	n:170000
Cons ci ratio: 9.762989e-02	ci left: 8.935252e-03	ci right 9.858066e-03	k: 1596	n:170000
KS ci ratio: 8.338773e-03	ci left: 5.628395e-01	ci right 5.675583e-01	k: 96084	n:170000
NAP1L2   170000 perm   41 sec   (4192 perm/sec)   p_kst 5.652000e-01   p_cons 9.388235e-03   p_joint 3.327647e-02

Outputting figure to mutsig2_images.part000000000111/NAP1L2.7_1387_170000_0.5652_0.0093882_0.033276.png
                gene_name: NAP1L2
               theta_stop: 0.098 
                    nperm: 170000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.0094 
      ci_cons_bounds_left: 0.0089 
     ci_cons_bounds_right: 0.0099 
                  p_joint: 0.033 
     ci_joint_bounds_left: 0.032 
    ci_joint_bounds_right: 0.034 

Current progress: 26 percent done.
MYO1F
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.333818e-01	ci left: 7.417406e-02	ci right 8.487241e-02	k: 794	n:10000
Cons ci ratio: 1.277887e-01	ci left: 8.047904e-02	ci right 9.156351e-02	k: 859	n:10000
KS ci ratio: 9.846546e-02	ci left: 1.300234e-01	ci right 1.435889e-01	k: 1367	n:10000
MYO1F   10000 perm   2 sec   (5943 perm/sec)   p_kst 1.367000e-01   p_cons 8.590000e-02   p_joint 7.940000e-02

Joint ci ratio: 9.640759e-02	ci left: 7.265752e-02	ci right 8.006620e-02	k: 1526	n:20000
Cons ci ratio: 9.076681e-02	ci left: 8.141531e-02	ci right 8.920575e-02	k: 1705	n:20000
KS ci ratio: 6.842904e-02	ci left: 1.361056e-01	ci right 1.457990e-01	k: 2818	n:20000
MYO1F   20000 perm   4 sec   (5363 perm/sec)   p_kst 1.409000e-01   p_cons 8.525000e-02   p_joint 7.630000e-02

Outputting figure to mutsig2_images.part000000000111/MYO1F.6_3409_20000_0.1409_0.08525_0.0763.png
                gene_name: MYO1F
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.085 
      ci_cons_bounds_left: 0.081 
     ci_cons_bounds_right: 0.089 
                  p_joint: 0.076 
     ci_joint_bounds_left: 0.073 
    ci_joint_bounds_right: 0.080 

Current progress: 28 percent done.
MYO5A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.057501e-01	ci left: 1.143760e-01	ci right 1.272458e-01	k: 1207	n:10000
Cons ci ratio: 2.521587e-02	ci left: 6.982727e-01	ci right 7.162065e-01	k: 7073	n:10000
KS ci ratio: 1.536584e-01	ci left: 5.638760e-02	ci right 6.587006e-02	k: 610	n:10000
MYO5A   10000 perm   2 sec   (4924 perm/sec)   p_kst 6.100000e-02   p_cons 7.073000e-01   p_joint 1.207000e-01

Joint ci ratio: 7.216866e-02	ci left: 1.238914e-01	ci right 1.332169e-01	k: 2570	n:20000
Cons ci ratio: 1.778986e-02	ci left: 7.018952e-01	ci right 7.145442e-01	k: 14165	n:20000
KS ci ratio: 1.119101e-01	ci left: 5.455657e-02	ci right 6.107273e-02	k: 1155	n:20000
MYO5A   20000 perm   4 sec   (4451 perm/sec)   p_kst 5.775000e-02   p_cons 7.082500e-01   p_joint 1.285000e-01

Joint ci ratio: 6.907853e-02	ci left: 9.357501e-02	ci right 1.003033e-01	k: 2907	n:30000
Cons ci ratio: 1.451669e-02	ci left: 7.033208e-01	ci right 7.136388e-01	k: 21255	n:30000
KS ci ratio: 9.038324e-02	ci left: 5.632722e-02	ci right 6.169192e-02	k: 1769	n:30000
MYO5A   30000 perm   7 sec   (4292 perm/sec)   p_kst 5.896667e-02   p_cons 7.085000e-01   p_joint 9.690000e-02

Outputting figure to mutsig2_images.part000000000111/MYO5A.6_5732_30000_0.058967_0.7085_0.0969.png
                gene_name: MYO5A
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.059 
        ci_ks_bounds_left: 0.056 
       ci_ks_bounds_right: 0.062 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.097 
     ci_joint_bounds_left: 0.094 
    ci_joint_bounds_right: 0.10 

Current progress: 30 percent done.
MYO6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.500759e-02	ci left: 3.274362e-01	ci right 3.460590e-01	k: 3367	n:10000
Cons ci ratio: 1.066050e-01	ci left: 1.127155e-01	ci right 1.255073e-01	k: 1190	n:10000
KS ci ratio: 4.551311e-02	ci left: 4.160815e-01	ci right 4.355618e-01	k: 4258	n:10000
MYO6   10000 perm   2 sec   (5497 perm/sec)   p_kst 4.258000e-01   p_cons 1.190000e-01   p_joint 3.367000e-01

Joint ci ratio: 5.215381e-02	ci left: 2.144731e-01	ci right 2.260084e-01	k: 4404	n:20000
Cons ci ratio: 7.538251e-02	ci left: 1.145924e-01	ci right 1.236187e-01	k: 2381	n:20000
KS ci ratio: 3.219870e-02	ci left: 4.187339e-01	ci right 4.324878e-01	k: 8512	n:20000
MYO6   20000 perm   4 sec   (5011 perm/sec)   p_kst 4.256000e-01   p_cons 1.190500e-01   p_joint 2.202000e-01

Outputting figure to mutsig2_images.part000000000111/MYO6.6_3994_20000_0.4256_0.11905_0.2202.png
                gene_name: MYO6
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 32 percent done.
NAALADL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.016490e-02	ci left: 2.889463e-01	ci right 3.069715e-01	k: 2979	n:10000
Cons ci ratio: 7.992458e-02	ci left: 1.860928e-01	ci right 2.016859e-01	k: 1938	n:10000
KS ci ratio: 5.825115e-02	ci left: 3.025284e-01	ci right 3.207814e-01	k: 3116	n:10000
NAALADL2   10000 perm   2 sec   (6137 perm/sec)   p_kst 3.116000e-01   p_cons 1.938000e-01   p_joint 2.979000e-01

Outputting figure to mutsig2_images.part000000000111/NAALADL2.6_2444_10000_0.3116_0.1938_0.2979.png
                gene_name: NAALADL2
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 34 percent done.
MYO3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.798932e-02	ci left: 1.582644e-01	ci right 1.729310e-01	k: 1655	n:10000
Cons ci ratio: 1.516850e-01	ci left: 5.783363e-02	ci right 6.742310e-02	k: 625	n:10000
KS ci ratio: 7.319143e-02	ci left: 2.146757e-01	ci right 2.310860e-01	k: 2228	n:10000
MYO3B   10000 perm   2 sec   (4605 perm/sec)   p_kst 2.228000e-01   p_cons 6.250000e-02   p_joint 1.655000e-01

Joint ci ratio: 6.874160e-02	ci left: 1.350216e-01	ci right 1.446834e-01	k: 2796	n:20000
Cons ci ratio: 1.055611e-01	ci left: 6.108537e-02	ci right 6.794190e-02	k: 1289	n:20000
KS ci ratio: 5.215381e-02	ci left: 2.144731e-01	ci right 2.260084e-01	k: 4404	n:20000
MYO3B   20000 perm   5 sec   (4396 perm/sec)   p_kst 2.202000e-01   p_cons 6.445000e-02   p_joint 1.398000e-01

Joint ci ratio: 6.504149e-02	ci left: 1.044763e-01	ci right 1.115331e-01	k: 3239	n:30000
Cons ci ratio: 8.578873e-02	ci left: 6.226857e-02	ci right 6.788268e-02	k: 1951	n:30000
KS ci ratio: 4.279335e-02	ci left: 2.138678e-01	ci right 2.232534e-01	k: 6556	n:30000
MYO3B   30000 perm   7 sec   (4332 perm/sec)   p_kst 2.185333e-01   p_cons 6.503333e-02   p_joint 1.079667e-01

Outputting figure to mutsig2_images.part000000000111/MYO3B.5_4292_30000_0.21853_0.065033_0.10797.png
                gene_name: MYO3B
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.065 
      ci_cons_bounds_left: 0.062 
     ci_cons_bounds_right: 0.068 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 36 percent done.
MYO5B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.944982e-03	ci left: 9.347514e-01	ci right 9.441906e-01	k: 9396	n:10000
KS ci ratio: 6.313950e-03	ci left: 9.715363e-01	ci right 9.777830e-01	k: 9748	n:10000
MYO5B   10000 perm   2 sec   (4949 perm/sec)   p_kst 9.748000e-01   p_cons 9.396000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000111/MYO5B.5_5707_10000_0.9748_0.9396_1.png
                gene_name: MYO5B
               theta_stop: 0.0099 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 38 percent done.
MYO7A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.006440e-02	ci left: 2.896400e-01	ci right 3.076774e-01	k: 2986	n:10000
KS ci ratio: 1.953949e-02	ci left: 7.930377e-01	ci right 8.087866e-01	k: 8010	n:10000
MYO7A   10000 perm   2 sec   (4642 perm/sec)   p_kst 8.010000e-01   p_cons 2.986000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000111/MYO7A.5_6874_10000_0.801_0.2986_1.png
                gene_name: MYO7A
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 40 percent done.
MYO9B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.142636e-02	ci left: 5.990540e-01	ci right 6.182826e-01	k: 6087	n:10000
Cons ci ratio: 4.889213e-02	ci left: 3.816178e-01	ci right 4.008456e-01	k: 3912	n:10000
KS ci ratio: 3.279574e-02	ci left: 5.784793e-01	ci right 5.978693e-01	k: 5882	n:10000
MYO9B   10000 perm   2 sec   (4923 perm/sec)   p_kst 5.882000e-01   p_cons 3.912000e-01   p_joint 6.087000e-01

Outputting figure to mutsig2_images.part000000000111/MYO9B.5_6641_10000_0.5882_0.3912_0.6087.png
                gene_name: MYO9B
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 42 percent done.
N4BP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.973651e-02	ci left: 2.316560e-01	ci right 2.484957e-01	k: 2400	n:10000
Cons ci ratio: 2.289056e-03	ci left: 9.953687e-01	ci right 9.977274e-01	k: 9967	n:10000
KS ci ratio: 1.388648e-01	ci left: 6.865367e-02	ci right 7.899624e-02	k: 737	n:10000
N4BP2   10000 perm   2 sec   (5186 perm/sec)   p_kst 7.370000e-02   p_cons 9.967000e-01   p_joint 2.400000e-01

Joint ci ratio: 5.613020e-02	ci left: 1.905179e-01	ci right 2.015706e-01	k: 3920	n:20000
Cons ci ratio: 1.387491e-03	ci left: 9.967622e-01	ci right 9.981869e-01	k: 19951	n:20000
KS ci ratio: 9.737753e-02	ci left: 7.128887e-02	ci right 7.863527e-02	k: 1498	n:20000
N4BP2   20000 perm   4 sec   (4667 perm/sec)   p_kst 7.490000e-02   p_cons 9.975500e-01   p_joint 1.960000e-01

Outputting figure to mutsig2_images.part000000000111/N4BP2.5_5377_20000_0.0749_0.99755_0.196.png
                gene_name: N4BP2
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.075 
        ci_ks_bounds_left: 0.071 
       ci_ks_bounds_right: 0.079 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 43 percent done.
MYO1E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.339773e-01	ci left: 2.410011e-02	ci right 3.057918e-02	k: 272	n:10000
Cons ci ratio: 3.873442e-02	ci left: 4.960503e-01	ci right 5.157462e-01	k: 5059	n:10000
KS ci ratio: 2.301068e-01	ci left: 2.494902e-02	ci right 3.152965e-02	k: 281	n:10000
MYO1E   10000 perm   2 sec   (5370 perm/sec)   p_kst 2.810000e-02   p_cons 5.059000e-01   p_joint 2.720000e-02

Joint ci ratio: 9.996020e-02	ci left: 6.782007e-02	ci right 7.500514e-02	k: 1427	n:20000
Cons ci ratio: 2.757277e-02	ci left: 4.956456e-01	ci right 5.095536e-01	k: 10052	n:20000
KS ci ratio: 1.630116e-01	ci left: 2.580547e-02	ci right 3.043309e-02	k: 561	n:20000
MYO1E   20000 perm   4 sec   (5080 perm/sec)   p_kst 2.805000e-02   p_cons 5.026000e-01   p_joint 7.135000e-02

Joint ci ratio: 1.017208e-01	ci left: 4.476252e-02	ci right 4.959233e-02	k: 1414	n:30000
Cons ci ratio: 2.255118e-02	ci left: 4.960922e-01	ci right 5.074408e-01	k: 15053	n:30000
KS ci ratio: 1.372601e-01	ci left: 2.464735e-02	ci right 2.831180e-02	k: 793	n:30000
MYO1E   30000 perm   6 sec   (4925 perm/sec)   p_kst 2.643333e-02   p_cons 5.017667e-01   p_joint 4.713333e-02

Joint ci ratio: 7.681496e-02	ci left: 5.877223e-02	ci right 6.349173e-02	k: 2444	n:40000
Cons ci ratio: 1.950347e-02	ci left: 4.975376e-01	ci right 5.073620e-01	k: 20098	n:40000
KS ci ratio: 1.188520e-01	ci left: 2.489938e-02	ci right 2.806987e-02	k: 1058	n:40000
MYO1E   40000 perm   8 sec   (4799 perm/sec)   p_kst 2.645000e-02   p_cons 5.024500e-01   p_joint 6.110000e-02

Joint ci ratio: 6.875647e-02	ci left: 5.893742e-02	ci right 6.315372e-02	k: 3051	n:50000
Cons ci ratio: 1.744072e-02	ci left: 4.981674e-01	ci right 5.069523e-01	k: 25128	n:50000
KS ci ratio: 1.060478e-01	ci left: 2.518763e-02	ci right 2.802769e-02	k: 1329	n:50000
MYO1E   50000 perm   11 sec   (4693 perm/sec)   p_kst 2.658000e-02   p_cons 5.025600e-01   p_joint 6.102000e-02

Joint ci ratio: 6.327714e-02	ci left: 5.821124e-02	ci right 6.203145e-02	k: 3606	n:60000
Cons ci ratio: 1.592312e-02	ci left: 4.984909e-01	ci right 5.065088e-01	k: 30150	n:60000
KS ci ratio: 9.750070e-02	ci left: 2.495281e-02	ci right 2.752662e-02	k: 1573	n:60000
MYO1E   60000 perm   13 sec   (4604 perm/sec)   p_kst 2.621667e-02   p_cons 5.025000e-01   p_joint 6.010000e-02

Outputting figure to mutsig2_images.part000000000111/MYO1E.4_3439_60000_0.026217_0.5025_0.0601.png
                gene_name: MYO1E
               theta_stop: 0.098 
                    nperm: 60000 
                     p_ks: 0.026 
        ci_ks_bounds_left: 0.025 
       ci_ks_bounds_right: 0.028 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.060 
     ci_joint_bounds_left: 0.058 
    ci_joint_bounds_right: 0.062 

Current progress: 45 percent done.
MYO1H
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.539147e-02	ci left: 3.243584e-01	ci right 3.429386e-01	k: 3336	n:10000
Cons ci ratio: 1.010923e-01	ci left: 1.240539e-01	ci right 1.373620e-01	k: 1306	n:10000
KS ci ratio: 4.449503e-02	ci left: 4.271481e-01	ci right 4.466887e-01	k: 4369	n:10000
MYO1H   10000 perm   2 sec   (6595 perm/sec)   p_kst 4.369000e-01   p_cons 1.306000e-01   p_joint 3.336000e-01

Joint ci ratio: 3.503700e-02	ci left: 3.781487e-01	ci right 3.916848e-01	k: 7698	n:20000
Cons ci ratio: 7.470763e-02	ci left: 1.164613e-01	ci right 1.255492e-01	k: 2419	n:20000
KS ci ratio: 3.118571e-02	ci left: 4.344024e-01	ci right 4.482147e-01	k: 8826	n:20000
MYO1H   20000 perm   3 sec   (5843 perm/sec)   p_kst 4.413000e-01   p_cons 1.209500e-01   p_joint 3.849000e-01

Outputting figure to mutsig2_images.part000000000111/MYO1H.4_3193_20000_0.4413_0.12095_0.3849.png
                gene_name: MYO1H
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.39 

Current progress: 47 percent done.
MYOM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.758145e-02	ci left: 5.111539e-01	ci right 5.308339e-01	k: 5210	n:10000
KS ci ratio: 2.172038e-02	ci left: 7.566645e-01	ci right 7.733809e-01	k: 7651	n:10000
MYOM3   10000 perm   2 sec   (5136 perm/sec)   p_kst 7.651000e-01   p_cons 5.210000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000111/MYOM3.4_4458_10000_0.7651_0.521_1.png
                gene_name: MYOM3
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 49 percent done.
MYST1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.272134e-02	ci left: 5.795829e-01	ci right 5.989651e-01	k: 5893	n:10000
KS ci ratio: 1.884446e-02	ci left: 8.045063e-01	ci right 8.199113e-01	k: 8123	n:10000
MYST1   10000 perm   2 sec   (6387 perm/sec)   p_kst 8.123000e-01   p_cons 5.893000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000111/MYST1.4_1513_10000_0.8123_0.5893_1.png
                gene_name: MYST1
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 51 percent done.
MYST2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.582604e-02	ci left: 6.881889e-01	ci right 7.062961e-01	k: 6973	n:10000
Cons ci ratio: 9.850717e-02	ci left: 1.299255e-01	ci right 1.434869e-01	k: 1366	n:10000
KS ci ratio: 1.509535e-02	ci left: 8.641699e-01	ci right 8.774133e-01	k: 8709	n:10000
MYST2   10000 perm   2 sec   (5508 perm/sec)   p_kst 8.709000e-01   p_cons 1.366000e-01   p_joint 6.973000e-01

Outputting figure to mutsig2_images.part000000000111/MYST2.4_1896_10000_0.8709_0.1366_0.6973.png
                gene_name: MYST2
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 53 percent done.
MYST4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.492391e-02	ci left: 7.031147e-01	ci right 7.209616e-01	k: 7121	n:10000
KS ci ratio: 8.387610e-03	ci left: 9.521083e-01	ci right 9.602233e-01	k: 9563	n:10000
MYST4   10000 perm   2 sec   (4784 perm/sec)   p_kst 9.563000e-01   p_cons 7.121000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000111/MYST4.4_6286_10000_0.9563_0.7121_1.png
                gene_name: MYST4
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 55 percent done.
MYT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.993563e-02	ci left: 2.905320e-01	ci right 3.085849e-01	k: 2995	n:10000
Cons ci ratio: 5.317518e-02	ci left: 3.426336e-01	ci right 3.614527e-01	k: 3520	n:10000
KS ci ratio: 7.391724e-02	ci left: 2.113215e-01	ci right 2.276422e-01	k: 2194	n:10000
MYT1   10000 perm   2 sec   (5739 perm/sec)   p_kst 2.194000e-01   p_cons 3.520000e-01   p_joint 2.995000e-01

Outputting figure to mutsig2_images.part000000000111/MYT1.4_3450_10000_0.2194_0.352_0.2995.png
                gene_name: MYT1
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 57 percent done.
N4BP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.507050e-02	ci left: 1.383491e-01	ci right 1.522583e-01	k: 1452	n:10000
Cons ci ratio: 3.304679e-02	ci left: 5.747677e-01	ci right 5.941831e-01	k: 5845	n:10000
KS ci ratio: 1.374621e-01	ci left: 7.000876e-02	ci right 8.044030e-02	k: 751	n:10000
N4BP1   10000 perm   2 sec   (6223 perm/sec)   p_kst 7.510000e-02   p_cons 5.845000e-01   p_joint 1.452000e-01

Joint ci ratio: 7.223315e-02	ci left: 1.236945e-01	ci right 1.330139e-01	k: 2566	n:20000
Cons ci ratio: 2.317466e-02	ci left: 5.816926e-01	ci right 5.953817e-01	k: 11771	n:20000
KS ci ratio: 9.556323e-02	ci left: 7.387984e-02	ci right 8.134352e-02	k: 1551	n:20000
N4BP1   20000 perm   4 sec   (5504 perm/sec)   p_kst 7.755000e-02   p_cons 5.885500e-01   p_joint 1.283000e-01

Outputting figure to mutsig2_images.part000000000111/N4BP1.4_2719_20000_0.07755_0.58855_0.1283.png
                gene_name: N4BP1
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.078 
        ci_ks_bounds_left: 0.074 
       ci_ks_bounds_right: 0.081 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 58 percent done.
NAALADL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.070647e-01	ci left: 1.118366e-01	ci right 1.245868e-01	k: 1181	n:10000
Cons ci ratio: 2.772066e-02	ci left: 6.572627e-01	ci right 6.758402e-01	k: 6666	n:10000
KS ci ratio: 2.173503e-01	ci left: 2.806894e-02	ci right 3.500749e-02	k: 314	n:10000
NAALADL1   10000 perm   2 sec   (6278 perm/sec)   p_kst 3.140000e-02   p_cons 6.666000e-01   p_joint 1.181000e-01

Joint ci ratio: 1.207563e-01	ci left: 4.702009e-02	ci right 5.311157e-02	k: 1000	n:20000
Cons ci ratio: 2.020957e-02	ci left: 6.462556e-01	ci right 6.594999e-01	k: 13058	n:20000
KS ci ratio: 1.577464e-01	ci left: 2.758319e-02	ci right 3.235477e-02	k: 598	n:20000
NAALADL1   20000 perm   4 sec   (5661 perm/sec)   p_kst 2.990000e-02   p_cons 6.529000e-01   p_joint 5.000000e-02

Joint ci ratio: 7.980672e-02	ci left: 7.145513e-02	ci right 7.742759e-02	k: 2232	n:30000
Cons ci ratio: 1.597294e-02	ci left: 6.621363e-01	ci right 6.728312e-01	k: 20025	n:30000
KS ci ratio: 1.281768e-01	ci left: 2.829237e-02	ci right 3.219931e-02	k: 906	n:30000
NAALADL1   30000 perm   6 sec   (5419 perm/sec)   p_kst 3.020000e-02   p_cons 6.675000e-01   p_joint 7.440000e-02

Joint ci ratio: 6.965134e-02	ci left: 7.081362e-02	ci right 7.594852e-02	k: 2934	n:40000
Cons ci ratio: 1.390479e-02	ci left: 6.605509e-01	ci right 6.698251e-01	k: 26608	n:40000
KS ci ratio: 1.080607e-01	ci left: 3.012635e-02	ci right 3.359205e-02	k: 1273	n:40000
NAALADL1   40000 perm   8 sec   (5263 perm/sec)   p_kst 3.182500e-02   p_cons 6.652000e-01   p_joint 7.335000e-02

Joint ci ratio: 6.044869e-02	ci left: 7.523007e-02	ci right 7.993911e-02	k: 3878	n:50000
Cons ci ratio: 1.243687e-02	ci left: 6.610440e-01	ci right 6.693368e-01	k: 33260	n:50000
KS ci ratio: 9.623211e-02	ci left: 3.057220e-02	ci right 3.368243e-02	k: 1605	n:50000
NAALADL1   50000 perm   10 sec   (5135 perm/sec)   p_kst 3.210000e-02   p_cons 6.652000e-01   p_joint 7.756000e-02

Outputting figure to mutsig2_images.part000000000111/NAALADL1.4_2295_50000_0.0321_0.6652_0.07756.png
                gene_name: NAALADL1
               theta_stop: 0.096 
                    nperm: 50000 
                     p_ks: 0.032 
        ci_ks_bounds_left: 0.031 
       ci_ks_bounds_right: 0.034 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.078 
     ci_joint_bounds_left: 0.075 
    ci_joint_bounds_right: 0.080 

Current progress: 60 percent done.
NAF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.179233e-01	ci left: 9.360310e-02	ci right 1.054314e-01	k: 994	n:10000
Cons ci ratio: 4.053366e-02	ci left: 4.733618e-01	ci right 4.930480e-01	k: 4832	n:10000
KS ci ratio: 1.528606e-01	ci left: 5.696592e-02	ci right 6.649137e-02	k: 616	n:10000
NAF1   10000 perm   2 sec   (6407 perm/sec)   p_kst 6.160000e-02   p_cons 4.832000e-01   p_joint 9.940000e-02

Joint ci ratio: 8.148920e-02	ci left: 9.945851e-02	ci right 1.079571e-01	k: 2073	n:20000
Cons ci ratio: 2.813256e-02	ci left: 4.855978e-01	ci right 4.995044e-01	k: 9851	n:20000
KS ci ratio: 1.073971e-01	ci left: 5.908656e-02	ci right 6.584133e-02	k: 1248	n:20000
NAF1   20000 perm   3 sec   (5833 perm/sec)   p_kst 6.240000e-02   p_cons 4.925500e-01   p_joint 1.036500e-01

Joint ci ratio: 6.573734e-02	ci left: 1.024725e-01	ci right 1.094707e-01	k: 3178	n:30000
Cons ci ratio: 2.313136e-02	ci left: 4.833947e-01	ci right 4.947407e-01	k: 14672	n:30000
KS ci ratio: 8.851174e-02	ci left: 5.864411e-02	ci right 6.410788e-02	k: 1840	n:30000
NAF1   30000 perm   5 sec   (5597 perm/sec)   p_kst 6.133333e-02   p_cons 4.890667e-01   p_joint 1.059333e-01

Outputting figure to mutsig2_images.part000000000111/NAF1.4_1658_30000_0.061333_0.48907_0.10593.png
                gene_name: NAF1
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.061 
        ci_ks_bounds_left: 0.059 
       ci_ks_bounds_right: 0.064 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 62 percent done.
MYO1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.476731e-02	ci left: 4.241566e-01	ci right 4.436819e-01	k: 4339	n:10000
Cons ci ratio: 1.142599e-01	ci left: 9.925222e-02	ci right 1.113788e-01	k: 1052	n:10000
KS ci ratio: 3.105821e-02	ci left: 6.046775e-01	ci right 6.238559e-01	k: 6143	n:10000
MYO1A   10000 perm   2 sec   (5957 perm/sec)   p_kst 6.143000e-01   p_cons 1.052000e-01   p_joint 4.339000e-01

Joint ci ratio: 3.658031e-02	ci left: 3.580241e-01	ci right 3.714153e-01	k: 7294	n:20000
Cons ci ratio: 8.173122e-02	ci left: 9.891852e-02	ci right 1.073972e-01	k: 2062	n:20000
KS ci ratio: 2.194637e-02	ci left: 6.078638e-01	ci right 6.214028e-01	k: 12293	n:20000
MYO1A   20000 perm   4 sec   (5396 perm/sec)   p_kst 6.146500e-01   p_cons 1.031000e-01   p_joint 3.647000e-01

Outputting figure to mutsig2_images.part000000000111/MYO1A.3_3240_20000_0.61465_0.1031_0.3647.png
                gene_name: MYO1A
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.099 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 64 percent done.
MYO1D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.035355e-02	ci left: 2.284954e-01	ci right 2.452581e-01	k: 2368	n:10000
Cons ci ratio: 5.266631e-02	ci left: 3.470060e-01	ci right 3.658777e-01	k: 3564	n:10000
KS ci ratio: 8.257621e-02	ci left: 1.762516e-01	ci right 1.915330e-01	k: 1838	n:10000
MYO1D   10000 perm   1 sec   (6671 perm/sec)   p_kst 1.838000e-01   p_cons 3.564000e-01   p_joint 2.368000e-01

Outputting figure to mutsig2_images.part000000000111/MYO1D.3_3109_10000_0.1838_0.3564_0.2368.png
                gene_name: MYO1D
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 66 percent done.
MYO1G
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.399645e-02	ci left: 7.185570e-01	ci right 7.361104e-01	k: 7274	n:10000
Cons ci ratio: 5.152669e-02	ci left: 3.570460e-01	ci right 3.760318e-01	k: 3665	n:10000
KS ci ratio: 1.905420e-02	ci left: 8.010545e-01	ci right 8.165651e-01	k: 8089	n:10000
MYO1G   10000 perm   2 sec   (6237 perm/sec)   p_kst 8.089000e-01   p_cons 3.665000e-01   p_joint 7.274000e-01

Outputting figure to mutsig2_images.part000000000111/MYO1G.3_3145_10000_0.8089_0.3665_0.7274.png
                gene_name: MYO1G
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 68 percent done.
MYO5C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.777764e-02	ci left: 5.085527e-01	ci right 5.282366e-01	k: 5184	n:10000
Cons ci ratio: 7.306490e-02	ci left: 2.152677e-01	ci right 2.316936e-01	k: 2234	n:10000
KS ci ratio: 2.452937e-02	ci left: 7.096736e-01	ci right 7.273989e-01	k: 7186	n:10000
MYO5C   10000 perm   2 sec   (5482 perm/sec)   p_kst 7.186000e-01   p_cons 2.234000e-01   p_joint 5.184000e-01

Outputting figure to mutsig2_images.part000000000111/MYO5C.3_5393_10000_0.7186_0.2234_0.5184.png
                gene_name: MYO5C
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 70 percent done.
MYOT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.697625e-02	ci left: 8.348036e-01	ci right 8.491966e-01	k: 8421	n:10000
KS ci ratio: 1.281508e-02	ci left: 8.975446e-01	ci right 9.092192e-01	k: 9035	n:10000
MYOT   10000 perm   2 sec   (6597 perm/sec)   p_kst 9.035000e-01   p_cons 8.421000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000111/MYOT.3_1533_10000_0.9035_0.8421_1.png
                gene_name: MYOT
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
N4BP2L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.202867e-01	ci left: 9.019709e-02	ci right 1.018395e-01	k: 959	n:10000
Cons ci ratio: 2.244472e-02	ci left: 7.445255e-01	ci right 7.615269e-01	k: 7531	n:10000
KS ci ratio: 2.142107e-01	ci left: 2.892165e-02	ci right 3.595419e-02	k: 323	n:10000
N4BP2L2   10000 perm   2 sec   (5901 perm/sec)   p_kst 3.230000e-02   p_cons 7.531000e-01   p_joint 9.590000e-02

Joint ci ratio: 1.087026e-01	ci left: 5.772211e-02	ci right 6.440620e-02	k: 1220	n:20000
Cons ci ratio: 1.517487e-02	ci left: 7.634984e-01	ci right 7.752232e-01	k: 15388	n:20000
KS ci ratio: 1.533170e-01	ci left: 2.921889e-02	ci right 3.411851e-02	k: 632	n:20000
N4BP2L2   20000 perm   4 sec   (5239 perm/sec)   p_kst 3.160000e-02   p_cons 7.694000e-01   p_joint 6.100000e-02

Joint ci ratio: 8.000043e-02	ci left: 7.112796e-02	ci right 7.708817e-02	k: 2222	n:30000
Cons ci ratio: 1.229943e-02	ci left: 7.672096e-01	ci right 7.767376e-01	k: 23160	n:30000
KS ci ratio: 1.243410e-01	ci left: 3.006950e-02	ci right 3.408846e-02	k: 961	n:30000
N4BP2L2   30000 perm   6 sec   (5021 perm/sec)   p_kst 3.203333e-02   p_cons 7.720000e-01   p_joint 7.406667e-02

Joint ci ratio: 6.023191e-02	ci left: 9.285868e-02	ci right 9.865016e-02	k: 3829	n:40000
Cons ci ratio: 1.066371e-02	ci left: 7.674539e-01	ci right 7.757067e-01	k: 30864	n:40000
KS ci ratio: 1.041160e-01	ci left: 3.244034e-02	ci right 3.602770e-02	k: 1368	n:40000
N4BP2L2   40000 perm   8 sec   (4881 perm/sec)   p_kst 3.420000e-02   p_cons 7.716000e-01   p_joint 9.572500e-02

Joint ci ratio: 4.848427e-02	ci left: 1.128097e-01	ci right 1.184350e-01	k: 5780	n:50000
Cons ci ratio: 9.988034e-03	ci left: 7.511451e-01	ci right 7.587052e-01	k: 37747	n:50000
KS ci ratio: 9.221455e-02	ci left: 3.326929e-02	ci right 3.650500e-02	k: 1743	n:50000
N4BP2L2   50000 perm   11 sec   (4751 perm/sec)   p_kst 3.486000e-02   p_cons 7.549400e-01   p_joint 1.156000e-01

Outputting figure to mutsig2_images.part000000000111/N4BP2L2.3_3633_50000_0.03486_0.75494_0.1156.png
                gene_name: N4BP2L2
               theta_stop: 0.092 
                    nperm: 50000 
                     p_ks: 0.035 
        ci_ks_bounds_left: 0.033 
       ci_ks_bounds_right: 0.037 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 74 percent done.
NAA25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.153307e-02	ci left: 7.598019e-01	ci right 7.764417e-01	k: 7682	n:10000
Cons ci ratio: 6.061366e-02	ci left: 2.858743e-01	ci right 3.038454e-01	k: 2948	n:10000
KS ci ratio: 3.338807e-02	ci left: 5.697529e-01	ci right 5.892008e-01	k: 5795	n:10000
NAA25   10000 perm   2 sec   (5768 perm/sec)   p_kst 5.795000e-01   p_cons 2.948000e-01   p_joint 7.682000e-01

Outputting figure to mutsig2_images.part000000000111/NAA25.3_3015_10000_0.5795_0.2948_0.7682.png
                gene_name: NAA25
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 75 percent done.
NAA30
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.595726e-02	ci left: 5.331752e-01	ci right 5.527998e-01	k: 5430	n:10000
Cons ci ratio: 4.536454e-02	ci left: 4.176764e-01	ci right 4.371659e-01	k: 4274	n:10000
KS ci ratio: 3.588489e-02	ci left: 5.341766e-01	ci right 5.537978e-01	k: 5440	n:10000
NAA30   10000 perm   1 sec   (7163 perm/sec)   p_kst 5.440000e-01   p_cons 4.274000e-01   p_joint 5.430000e-01

Outputting figure to mutsig2_images.part000000000111/NAA30.3_1105_10000_0.544_0.4274_0.543.png
                gene_name: NAA30
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 77 percent done.
NAA38
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.928093e-02	ci left: 2.340268e-01	ci right 2.509234e-01	k: 2424	n:10000
KS ci ratio: 3.645266e-02	ci left: 5.263665e-01	ci right 5.460124e-01	k: 5362	n:10000
NAA38   10000 perm   1 sec   (7084 perm/sec)   p_kst 5.362000e-01   p_cons 2.424000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000111/NAA38.3_307_10000_0.5362_0.2424_1.png
                gene_name: NAA38
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
NAMPT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.408155e-02	ci left: 4.317357e-01	ci right 4.512984e-01	k: 4415	n:10000
Cons ci ratio: 4.657119e-02	ci left: 4.049202e-01	ci right 4.243295e-01	k: 4146	n:10000
KS ci ratio: 4.740610e-02	ci left: 3.963535e-01	ci right 4.157013e-01	k: 4060	n:10000
NAMPT   10000 perm   2 sec   (6354 perm/sec)   p_kst 4.060000e-01   p_cons 4.146000e-01   p_joint 4.415000e-01

Outputting figure to mutsig2_images.part000000000111/NAMPT.3_1520_10000_0.406_0.4146_0.4415.png
                gene_name: NAMPT
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 81 percent done.
MYOC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.601716e-03	ci left: 9.840410e-01	ci right 9.886693e-01	k: 9865	n:10000
KS ci ratio: 2.358540e-02	ci left: 7.254243e-01	ci right 7.428391e-01	k: 7342	n:10000
MYOC   10000 perm   1 sec   (7371 perm/sec)   p_kst 7.342000e-01   p_cons 9.865000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000111/MYOC.2_1527_10000_0.7342_0.9865_1.png
                gene_name: MYOC
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
MYOF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.635105e-03	ci left: 9.383791e-01	ci right 9.475607e-01	k: 9431	n:10000
Cons ci ratio: 1.068561e-02	ci left: 9.257524e-01	ci right 9.357949e-01	k: 9309	n:10000
KS ci ratio: 3.561095e-02	ci left: 5.379823e-01	ci right 5.575898e-01	k: 5478	n:10000
MYOF   10000 perm   2 sec   (5017 perm/sec)   p_kst 5.478000e-01   p_cons 9.309000e-01   p_joint 9.431000e-01

Outputting figure to mutsig2_images.part000000000111/MYOF.2_6402_10000_0.5478_0.9309_0.9431.png
                gene_name: MYOF
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 85 percent done.
MYOZ2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.825115e-02	ci left: 3.025284e-01	ci right 3.207814e-01	k: 3116	n:10000
Cons ci ratio: 4.784120e-02	ci left: 3.919717e-01	ci right 4.112857e-01	k: 4016	n:10000
KS ci ratio: 8.380712e-02	ci left: 1.719241e-01	ci right 1.870631e-01	k: 1794	n:10000
MYOZ2   10000 perm   1 sec   (7243 perm/sec)   p_kst 1.794000e-01   p_cons 4.016000e-01   p_joint 3.116000e-01

Outputting figure to mutsig2_images.part000000000111/MYOZ2.2_815_10000_0.1794_0.4016_0.3116.png
                gene_name: MYOZ2
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 87 percent done.
MYRIP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.323371e-02	ci left: 2.144784e-01	ci right 2.308835e-01	k: 2226	n:10000
Cons ci ratio: 8.811689e-02	ci left: 1.578715e-01	ci right 1.725241e-01	k: 1651	n:10000
KS ci ratio: 1.416858e-02	ci left: 8.780732e-01	ci right 8.907019e-01	k: 8845	n:10000
MYRIP   10000 perm   2 sec   (6567 perm/sec)   p_kst 8.845000e-01   p_cons 1.651000e-01   p_joint 2.226000e-01

Outputting figure to mutsig2_images.part000000000111/MYRIP.2_2644_10000_0.8845_0.1651_0.2226.png
                gene_name: MYRIP
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 89 percent done.
MYSM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.072499e-02	ci left: 6.098000e-01	ci right 6.289304e-01	k: 6194	n:10000
KS ci ratio: 3.086197e-02	ci left: 6.076906e-01	ci right 6.268410e-01	k: 6173	n:10000
MYSM1   10000 perm   2 sec   (6381 perm/sec)   p_kst 6.173000e-01   p_cons 6.194000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000111/MYSM1.2_2567_10000_0.6173_0.6194_1.png
                gene_name: MYSM1
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
NAA10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.477642e-02	ci left: 4.240569e-01	ci right 4.435817e-01	k: 4338	n:10000
Cons ci ratio: 1.032447e-02	ci left: 9.301971e-01	ci right 9.399476e-01	k: 9352	n:10000
KS ci ratio: 5.043521e-02	ci left: 3.669909e-01	ci right 3.860810e-01	k: 3765	n:10000
NAA10   10000 perm   1 sec   (7197 perm/sec)   p_kst 3.765000e-01   p_cons 9.352000e-01   p_joint 4.338000e-01

Outputting figure to mutsig2_images.part000000000111/NAA10.2_740_10000_0.3765_0.9352_0.4338.png
                gene_name: NAA10
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 92 percent done.
NAA11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.042473e-02	ci left: 2.871625e-01	ci right 3.051564e-01	k: 2961	n:10000
KS ci ratio: 1.826768e-02	ci left: 8.139530e-01	ci right 8.290592e-01	k: 8216	n:10000
NAA11   10000 perm   1 sec   (7350 perm/sec)   p_kst 8.216000e-01   p_cons 2.961000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000111/NAA11.2_694_10000_0.8216_0.2961_1.png
                gene_name: NAA11
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
NACA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.134047e-02	ci left: 2.235583e-01	ci right 2.401981e-01	k: 2318	n:10000
KS ci ratio: 3.296523e-02	ci left: 5.759714e-01	ci right 5.953787e-01	k: 5857	n:10000
NACA2   10000 perm   1 sec   (7502 perm/sec)   p_kst 5.857000e-01   p_cons 2.318000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000111/NACA2.2_652_10000_0.5857_0.2318_1.png
                gene_name: NACA2
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
NAGK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.440813e-02	ci left: 7.116922e-01	ci right 7.293792e-01	k: 7206	n:10000
Cons ci ratio: 5.068314e-02	ci left: 3.647032e-01	ci right 3.837701e-01	k: 3742	n:10000
KS ci ratio: 3.019312e-02	ci left: 6.180386e-01	ci right 6.370870e-01	k: 6276	n:10000
NAGK   10000 perm   1 sec   (7068 perm/sec)   p_kst 6.276000e-01   p_cons 3.742000e-01   p_joint 7.206000e-01

Outputting figure to mutsig2_images.part000000000111/NAGK.2_1213_10000_0.6276_0.3742_0.7206.png
                gene_name: NAGK
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 98 percent done.
NANOG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.709500e-02	ci left: 5.176582e-01	ci right 5.373258e-01	k: 5275	n:10000
KS ci ratio: 8.372187e-02	ci left: 1.722191e-01	ci right 1.873680e-01	k: 1797	n:10000
NANOG   10000 perm   1 sec   (7033 perm/sec)   p_kst 1.797000e-01   p_cons 5.275000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000111/NANOG.2_934_10000_0.1797_0.5275_1.png
                gene_name: NANOG
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000111
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 111 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1730>
Subject: Job 8004298: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1730>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000112> was used as the working directory.
Started at Sun Nov 11 15:09:11 2012
Results reported at Sun Nov 11 15:17:10 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000112.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000112.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 112  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000112.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    488.01 sec.
    Max Memory :      4806 MB
    Max Swap   :      7100 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
112
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 112
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 112: processing genes 10043 - 10133
Calculating significance of each gene.
Using projection method.
10043	NAP1L3	3.893181e-01
10044	NAP1L4	7.339313e-01
10045	NAP1L5	5.562334e-01
10046	NAPA	7.161448e-01
10047	NAPB	6.309791e-01
10048	NAPEPLD	4.924894e-01
10049	NAPG	5.373061e-01
10050	NAPRT1	6.230143e-01
10051	NAPSA	8.891942e-01
10052	NARF	2.412568e-01
10053	NARFL	1
10054	NARG2	4.520324e-01
10055	NARS	1.901043e-01
10056	NARS2	6.105132e-01
10057	NASP	9.723176e-01
10058	NAT1	1
10059	NAT10	8.536037e-01
10060	NAT15	1
10061	NAT2	3.218916e-01
10062	NAT6	1
10063	NAT8	1
10064	NAT8B	3.491480e-01
10065	NAT8L	1
10066	NAT9	1
10067	NAV1	9.996522e-01
10068	NAV2	9.997514e-01
10069	NAV3	1
10070	NBAS	1
10071	NBEA	9.924702e-01
10072	NBEAL1	9.123058e-01
10073	NBEAL2	9.998011e-01
10074	NBL1	1
10075	NBN	8.978506e-01
10076	NBPF1	9.412891e-01
10077	NBPF10	1
10078	NBPF14	4.863700e-01
10079	NBPF15	3.617335e-01
10080	NBPF16	7.737127e-01
10081	NBPF3	8.199621e-01
10082	NBPF7	1
10083	NBPF9	1
10084	NBR1	5.529882e-01
10085	NCALD	6.029730e-01
10086	NCAM1	4.461931e-01
10087	NCAM2	9.557888e-01
10088	NCAN	7.756711e-01
10089	NCAPD2	9.944162e-01
10090	NCAPD3	5.068356e-01
10091	NCAPG	3.351577e-01
10092	NCAPG2	8.411811e-01
10093	NCAPH	9.561074e-01
10094	NCAPH2	7.638480e-01
10095	NCBP1	8.598353e-01
10096	NCBP2	1
10097	NCCRP1	5.222179e-01
10098	NCDN	9.643487e-01
10099	NCEH1	5.724088e-01
10100	NCF1	1
10101	NCF2	1
10102	NCF4	8.152572e-01
10103	NCK1	2.655568e-01
10104	NCK2	6.502452e-01
10105	NCKAP1	2.458664e-01
10106	NCKAP1L	2.188032e-01
10107	NCKAP5	9.668126e-01
10108	NCKAP5L	6.234126e-01
10109	NCKIPSD	9.359961e-01
10110	NCL	9.624103e-01
10111	NCLN	7.624015e-01
10112	NCOA1	1
10113	NCOA2	1.118483e-02
10114	NCOA3	8.918886e-01
10115	NCOA4	1
10116	NCOA5	8.408764e-01
10117	NCOA6	9.994357e-01
10118	NCOA7	4.364231e-01
10119	NCOR1	9.994288e-01
10120	NCOR2	1
10121	NCR1	1.936209e-02
10122	NCR2	4.468587e-01
10123	NCR3	1
10124	NCS1	3.236503e-01
10125	NCSTN	8.665064e-01
10126	NDC80	1
10127	NDE1	1
10128	NDEL1	6.011223e-01
10129	NDFIP1	1
10130	NDFIP2	5.157977e-01
10131	NDN	6.270204e-01
10132	NDNL2	1
10133	NDOR1	5.396552e-01
Done

Running MutSig 2:
Scatter job 112: processing genes 10043 - 10133
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
NAV3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.681810e-03	ci left: 9.592178e-01	ci right 9.667094e-01	k: 9631	n:10000
KS ci ratio: 8.886211e-03	ci left: 9.467940e-01	ci right 9.553408e-01	k: 9512	n:10000
NAV3   10000 perm   3 sec   (3485 perm/sec)   p_kst 9.512000e-01   p_cons 9.631000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000112/NAV3.40_7248_10000_0.9512_0.9631_1.png
                gene_name: NAV3
               theta_stop: 0.0089 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 2 percent done.
NCKAP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.757392e-02	ci left: 5.112540e-01	ci right 5.309337e-01	k: 5211	n:10000
Cons ci ratio: 5.628775e-02	ci left: 3.173107e-01	ci right 3.357904e-01	k: 3265	n:10000
KS ci ratio: 3.598625e-02	ci left: 5.327746e-01	ci right 5.524006e-01	k: 5426	n:10000
NCKAP5   10000 perm   2 sec   (4440 perm/sec)   p_kst 5.426000e-01   p_cons 3.265000e-01   p_joint 5.211000e-01

Outputting figure to mutsig2_images.part000000000112/NCKAP5.16_5802_10000_0.5426_0.3265_0.5211.png
                gene_name: NCKAP5
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 4 percent done.
NCAM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.132749e-02	ci left: 7.632436e-01	ci right 7.797979e-01	k: 7716	n:10000
KS ci ratio: 1.232463e-02	ci left: 9.043236e-01	ci right 9.156362e-01	k: 9101	n:10000
NCAM2   10000 perm   2 sec   (5338 perm/sec)   p_kst 9.101000e-01   p_cons 7.716000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000112/NCAM2.13_2586_10000_0.9101_0.7716_1.png
                gene_name: NCAM2
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 7 percent done.
NBEA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.771017e-01	ci left: 4.255135e-02	ci right 5.091525e-02	k: 466	n:10000
Cons ci ratio: 1.920312e-01	ci left: 3.614841e-02	ci right 4.392246e-02	k: 399	n:10000
KS ci ratio: 5.866090e-02	ci left: 2.995534e-01	ci right 3.177582e-01	k: 3086	n:10000
NBEA   10000 perm   3 sec   (3999 perm/sec)   p_kst 3.086000e-01   p_cons 3.990000e-02   p_joint 4.660000e-02

Joint ci ratio: 8.702652e-02	ci left: 8.807791e-02	ci right 9.614113e-02	k: 1841	n:20000
Cons ci ratio: 1.230376e-01	ci left: 4.532094e-02	ci right 5.131125e-02	k: 965	n:20000
KS ci ratio: 4.107975e-02	ci left: 3.063771e-01	ci right 3.192774e-01	k: 6256	n:20000
NBEA   20000 perm   5 sec   (3689 perm/sec)   p_kst 3.128000e-01   p_cons 4.825000e-02   p_joint 9.205000e-02

Joint ci ratio: 6.165772e-02	ci left: 1.150604e-01	ci right 1.224136e-01	k: 3561	n:30000
Cons ci ratio: 1.002426e-01	ci left: 4.606374e-02	ci right 5.095750e-02	k: 1454	n:30000
KS ci ratio: 3.367851e-02	ci left: 3.058300e-01	ci right 3.163399e-01	k: 9332	n:30000
NBEA   30000 perm   8 sec   (3570 perm/sec)   p_kst 3.110667e-01   p_cons 4.846667e-02   p_joint 1.187000e-01

Joint ci ratio: 5.587209e-02	ci left: 1.065052e-01	ci right 1.126516e-01	k: 4382	n:40000
Cons ci ratio: 9.277446e-02	ci left: 4.073943e-02	ci right 4.472729e-02	k: 1708	n:40000
KS ci ratio: 2.889649e-02	ci left: 3.105236e-01	ci right 3.196533e-01	k: 12603	n:40000
NBEA   40000 perm   11 sec   (3490 perm/sec)   p_kst 3.150750e-01   p_cons 4.270000e-02   p_joint 1.095500e-01

Outputting figure to mutsig2_images.part000000000112/NBEA.12_9073_40000_0.31507_0.0427_0.10955.png
                gene_name: NBEA
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.043 
      ci_cons_bounds_left: 0.041 
     ci_cons_bounds_right: 0.045 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 9 percent done.
NCKAP1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.487684e-02	ci left: 5.483008e-01	ci right 5.678653e-01	k: 5581	n:10000
Cons ci ratio: 3.012213e-02	ci left: 6.191440e-01	ci right 6.381810e-01	k: 6287	n:10000
KS ci ratio: 4.465815e-02	ci left: 4.253532e-01	ci right 4.448846e-01	k: 4351	n:10000
NCKAP1L   10000 perm   2 sec   (5700 perm/sec)   p_kst 4.351000e-01   p_cons 6.287000e-01   p_joint 5.581000e-01

Outputting figure to mutsig2_images.part000000000112/NCKAP1L.12_3508_10000_0.4351_0.6287_0.5581.png
                gene_name: NCKAP1L
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 11 percent done.
NCOA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.855993e-01	ci left: 3.872553e-02	ci right 4.674361e-02	k: 426	n:10000
Cons ci ratio: 1.598823e-01	ci left: 5.215064e-02	ci right 6.130972e-02	k: 566	n:10000
KS ci ratio: 1.579714e-01	ci left: 5.340171e-02	ci right 6.265786e-02	k: 579	n:10000
NCOA2   10000 perm   2 sec   (4894 perm/sec)   p_kst 5.790000e-02   p_cons 5.660000e-02   p_joint 4.260000e-02

Joint ci ratio: 1.794582e-01	ci left: 2.120602e-02	ci right 2.543413e-02	k: 465	n:20000
Cons ci ratio: 1.126881e-01	ci left: 5.382647e-02	ci right 6.030306e-02	k: 1140	n:20000
KS ci ratio: 1.089881e-01	ci left: 5.742979e-02	ci right 6.409861e-02	k: 1214	n:20000
NCOA2   20000 perm   5 sec   (4434 perm/sec)   p_kst 6.070000e-02   p_cons 5.700000e-02   p_joint 2.325000e-02

Joint ci ratio: 1.455715e-01	ci left: 2.187970e-02	ci right 2.534674e-02	k: 707	n:30000
Cons ci ratio: 9.129107e-02	ci left: 5.525076e-02	ci right 6.056859e-02	k: 1736	n:30000
KS ci ratio: 9.046474e-02	ci left: 5.622935e-02	ci right 6.158981e-02	k: 1766	n:30000
NCOA2   30000 perm   7 sec   (4283 perm/sec)   p_kst 5.886667e-02   p_cons 5.786667e-02   p_joint 2.356667e-02

Joint ci ratio: 1.194910e-01	ci left: 2.463238e-02	ci right 2.778692e-02	k: 1047	n:40000
Cons ci ratio: 7.882612e-02	ci left: 5.592529e-02	ci right 6.053911e-02	k: 2328	n:40000
KS ci ratio: 7.904257e-02	ci left: 5.563087e-02	ci right 6.023357e-02	k: 2316	n:40000
NCOA2   40000 perm   10 sec   (4176 perm/sec)   p_kst 5.790000e-02   p_cons 5.820000e-02   p_joint 2.617500e-02

Joint ci ratio: 1.148197e-01	ci left: 2.147054e-02	ci right 2.410527e-02	k: 1138	n:50000
Cons ci ratio: 7.080508e-02	ci left: 5.571122e-02	ci right 5.982031e-02	k: 2887	n:50000
KS ci ratio: 7.023897e-02	ci left: 5.657661e-02	ci right 6.071481e-02	k: 2931	n:50000
NCOA2   50000 perm   12 sec   (4098 perm/sec)   p_kst 5.862000e-02   p_cons 5.774000e-02   p_joint 2.276000e-02

Joint ci ratio: 1.079613e-01	ci left: 2.033806e-02	ci right 2.267521e-02	k: 1289	n:60000
Cons ci ratio: 6.440555e-02	ci left: 5.627409e-02	ci right 6.003546e-02	k: 3488	n:60000
KS ci ratio: 6.365350e-02	ci left: 5.755451e-02	ci right 6.135491e-02	k: 3566	n:60000
NCOA2   60000 perm   15 sec   (4027 perm/sec)   p_kst 5.943333e-02   p_cons 5.813333e-02   p_joint 2.148333e-02

Joint ci ratio: 9.839400e-02	ci left: 2.107943e-02	ci right 2.327471e-02	k: 1551	n:70000
Cons ci ratio: 5.957752e-02	ci left: 5.650500e-02	ci right 5.998887e-02	k: 4076	n:70000
KS ci ratio: 5.895812e-02	ci left: 5.764602e-02	ci right 6.116204e-02	k: 4157	n:70000
NCOA2   70000 perm   18 sec   (3966 perm/sec)   p_kst 5.938571e-02   p_cons 5.822857e-02   p_joint 2.215714e-02

Outputting figure to mutsig2_images.part000000000112/NCOA2.12_4479_70000_0.059386_0.058229_0.022157.png
                gene_name: NCOA2
               theta_stop: 0.098 
                    nperm: 70000 
                     p_ks: 0.059 
        ci_ks_bounds_left: 0.058 
       ci_ks_bounds_right: 0.061 
                   p_cons: 0.058 
      ci_cons_bounds_left: 0.057 
     ci_cons_bounds_right: 0.060 
                  p_joint: 0.022 
     ci_joint_bounds_left: 0.021 
    ci_joint_bounds_right: 0.023 

Current progress: 13 percent done.
NAV2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.929411e-02	ci left: 7.970962e-01	ci right 8.127257e-01	k: 8050	n:10000
KS ci ratio: 1.448544e-02	ci left: 8.733677e-01	ci right 8.862101e-01	k: 8799	n:10000
NAV2   10000 perm   2 sec   (4687 perm/sec)   p_kst 8.799000e-01   p_cons 8.050000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000112/NAV2.10_7560_10000_0.8799_0.805_1.png
                gene_name: NAV2
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 16 percent done.
NCAN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.576490e-02	ci left: 6.891970e-01	ci right 7.072873e-01	k: 6983	n:10000
Cons ci ratio: 2.120649e-02	ci left: 7.652685e-01	ci right 7.817719e-01	k: 7736	n:10000
KS ci ratio: 4.686983e-02	ci left: 4.018319e-01	ci right 4.212197e-01	k: 4115	n:10000
NCAN   10000 perm   2 sec   (5117 perm/sec)   p_kst 4.115000e-01   p_cons 7.736000e-01   p_joint 6.983000e-01

Outputting figure to mutsig2_images.part000000000112/NCAN.10_4022_10000_0.4115_0.7736_0.6983.png
                gene_name: NCAN
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 18 percent done.
NDN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.676892e-02	ci left: 5.220620e-01	ci right 5.417194e-01	k: 5319	n:10000
Cons ci ratio: 2.696332e-02	ci left: 6.695471e-01	ci right 6.879487e-01	k: 6788	n:10000
KS ci ratio: 4.837274e-02	ci left: 3.866946e-01	ci right 4.059658e-01	k: 3963	n:10000
NDN   10000 perm   2 sec   (6076 perm/sec)   p_kst 3.963000e-01   p_cons 6.788000e-01   p_joint 5.319000e-01

Outputting figure to mutsig2_images.part000000000112/NDN.9_970_10000_0.3963_0.6788_0.5319.png
                gene_name: NDN
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 20 percent done.
NBAS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.789526e-02	ci left: 2.414380e-01	ci right 2.585078e-01	k: 2499	n:10000
Cons ci ratio: 2.371229e-02	ci left: 7.233032e-01	ci right 7.407614e-01	k: 7321	n:10000
KS ci ratio: 1.140181e-01	ci left: 9.964203e-02	ci right 1.117887e-01	k: 1056	n:10000
NBAS   10000 perm   2 sec   (4856 perm/sec)   p_kst 1.056000e-01   p_cons 7.321000e-01   p_joint 2.499000e-01

Joint ci ratio: 5.719380e-02	ci left: 1.847318e-01	ci right 1.956584e-01	k: 3803	n:20000
Cons ci ratio: 1.675456e-02	ci left: 7.262060e-01	ci right 7.385264e-01	k: 14648	n:20000
KS ci ratio: 8.028516e-02	ci left: 1.022081e-01	ci right 1.108067e-01	k: 2129	n:20000
NBAS   20000 perm   5 sec   (4328 perm/sec)   p_kst 1.064500e-01   p_cons 7.324000e-01   p_joint 1.901500e-01

Outputting figure to mutsig2_images.part000000000112/NBAS.8_7324_20000_0.10645_0.7324_0.19015.png
                gene_name: NBAS
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 22 percent done.
NCAPD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.229471e-02	ci left: 2.189190e-01	ci right 2.354402e-01	k: 2271	n:10000
Cons ci ratio: 1.070134e-01	ci left: 1.119342e-01	ci right 1.246891e-01	k: 1182	n:10000
KS ci ratio: 5.513094e-02	ci left: 3.264433e-01	ci right 3.450525e-01	k: 3357	n:10000
NCAPD3   10000 perm   2 sec   (4597 perm/sec)   p_kst 3.357000e-01   p_cons 1.182000e-01   p_joint 2.271000e-01

Joint ci ratio: 6.182768e-02	ci left: 1.621508e-01	ci right 1.725461e-01	k: 3346	n:20000
Cons ci ratio: 7.472519e-02	ci left: 1.164121e-01	ci right 1.254984e-01	k: 2418	n:20000
KS ci ratio: 3.932232e-02	ci left: 3.253737e-01	ci right 3.384752e-01	k: 6638	n:20000
NCAPD3   20000 perm   5 sec   (4226 perm/sec)   p_kst 3.319000e-01   p_cons 1.209000e-01   p_joint 1.673000e-01

Outputting figure to mutsig2_images.part000000000112/NCAPD3.8_4637_20000_0.3319_0.1209_0.1673.png
                gene_name: NCAPD3
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 24 percent done.
NCOA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.073636e-01	ci left: 3.091404e-02	ci right 3.816041e-02	k: 344	n:10000
Cons ci ratio: 4.846095e-01	ci left: 4.932166e-03	ci right 8.165407e-03	k: 64	n:10000
KS ci ratio: 2.366999e-02	ci left: 7.240102e-01	ci right 7.414540e-01	k: 7328	n:10000
NCOA6   10000 perm   2 sec   (4655 perm/sec)   p_kst 7.328000e-01   p_cons 6.400000e-03   p_joint 3.440000e-02

Joint ci ratio: 1.657632e-01	ci left: 2.494157e-02	ci right 2.949728e-02	k: 543	n:20000
Cons ci ratio: 3.833774e-01	ci left: 4.205484e-03	ci right 6.242447e-03	k: 103	n:20000
KS ci ratio: 1.737741e-02	ci left: 7.115564e-01	ci right 7.240802e-01	k: 14357	n:20000
NCOA6   20000 perm   5 sec   (4343 perm/sec)   p_kst 7.178500e-01   p_cons 5.150000e-03   p_joint 2.715000e-02

Joint ci ratio: 1.248785e-01	ci left: 2.981089e-02	ci right 3.381379e-02	k: 953	n:30000
Cons ci ratio: 3.090706e-01	ci left: 4.509917e-03	ci right 6.188071e-03	k: 159	n:30000
KS ci ratio: 1.407376e-02	ci left: 7.160209e-01	ci right 7.262029e-01	k: 21634	n:30000
NCOA6   30000 perm   7 sec   (4253 perm/sec)   p_kst 7.211333e-01   p_cons 5.300000e-03   p_joint 3.176667e-02

Joint ci ratio: 1.070238e-01	ci left: 3.071071e-02	ci right 3.420760e-02	k: 1297	n:40000
Cons ci ratio: 2.829597e-01	ci left: 4.099861e-03	ci right 5.473552e-03	k: 190	n:40000
KS ci ratio: 1.222035e-02	ci left: 7.156469e-01	ci right 7.244711e-01	k: 28803	n:40000
NCOA6   40000 perm   10 sec   (4173 perm/sec)   p_kst 7.200750e-01   p_cons 4.750000e-03   p_joint 3.242500e-02

Joint ci ratio: 1.028358e-01	ci left: 2.678591e-02	ci right 2.970920e-02	k: 1411	n:50000
Cons ci ratio: 2.556555e-01	ci left: 4.081954e-03	ci right 5.296654e-03	k: 233	n:50000
KS ci ratio: 1.090353e-02	ci left: 7.171062e-01	ci right 7.249881e-01	k: 36053	n:50000
NCOA6   50000 perm   12 sec   (4104 perm/sec)   p_kst 7.210600e-01   p_cons 4.660000e-03   p_joint 2.822000e-02

Joint ci ratio: 1.050835e-01	ci left: 2.147429e-02	ci right 2.387219e-02	k: 1359	n:60000
Cons ci ratio: 2.384683e-01	ci left: 3.948849e-03	ci right 5.033272e-03	k: 268	n:60000
KS ci ratio: 1.014783e-02	ci left: 7.095793e-01	ci right 7.168334e-01	k: 42793	n:60000
NCOA6   60000 perm   15 sec   (4043 perm/sec)   p_kst 7.132167e-01   p_cons 4.466667e-03   p_joint 2.265000e-02

Joint ci ratio: 1.015860e-01	ci left: 1.976946e-02	ci right 2.189909e-02	k: 1457	n:70000
Cons ci ratio: 2.002790e-01	ci left: 4.897685e-03	ci right 6.001062e-03	k: 380	n:70000
KS ci ratio: 9.393165e-03	ci left: 7.099340e-01	ci right 7.166483e-01	k: 49931	n:70000
NCOA6   70000 perm   18 sec   (3986 perm/sec)   p_kst 7.133000e-01   p_cons 5.428571e-03   p_joint 2.081429e-02

Joint ci ratio: 9.488805e-02	ci left: 1.989547e-02	ci right 2.188949e-02	k: 1670	n:80000
Cons ci ratio: 1.828442e-01	ci left: 5.190067e-03	ci right 6.246264e-03	k: 456	n:80000
KS ci ratio: 8.790805e-03	ci left: 7.099517e-01	ci right 7.162328e-01	k: 57048	n:80000
NCOA6   80000 perm   20 sec   (3936 perm/sec)   p_kst 7.131000e-01   p_cons 5.700000e-03   p_joint 2.087500e-02

Joint ci ratio: 9.752862e-02	ci left: 1.677264e-02	ci right 1.850309e-02	k: 1586	n:90000
Cons ci ratio: 1.702563e-01	ci left: 5.356874e-03	ci right 6.364265e-03	k: 526	n:90000
KS ci ratio: 8.263305e-03	ci left: 7.113585e-01	ci right 7.172721e-01	k: 64289	n:90000
NCOA6   90000 perm   23 sec   (3881 perm/sec)   p_kst 7.143222e-01   p_cons 5.844444e-03   p_joint 1.762222e-02

Joint ci ratio: 8.728601e-02	ci left: 1.890635e-02	ci right 2.064166e-02	k: 1976	n:100000
Cons ci ratio: 1.640109e-01	ci left: 5.214008e-03	ci right 6.155012e-03	k: 567	n:100000
KS ci ratio: 7.826055e-03	ci left: 7.122010e-01	ci right 7.178065e-01	k: 71501	n:100000
NCOA6   100000 perm   26 sec   (3829 perm/sec)   p_kst 7.150100e-01   p_cons 5.670000e-03   p_joint 1.976000e-02

Joint ci ratio: 8.201449e-02	ci left: 1.951037e-02	ci right 2.118779e-02	k: 2237	n:110000
Cons ci ratio: 1.559772e-01	ci left: 5.263642e-03	ci right 6.162720e-03	k: 627	n:110000
KS ci ratio: 7.467530e-03	ci left: 7.120213e-01	ci right 7.173673e-01	k: 78617	n:110000
NCOA6   110000 perm   29 sec   (3775 perm/sec)   p_kst 7.147000e-01   p_cons 5.700000e-03   p_joint 2.033636e-02

Joint ci ratio: 8.059369e-02	ci left: 1.855357e-02	ci right 2.011978e-02	k: 2319	n:120000
Cons ci ratio: 1.497873e-01	ci left: 5.249777e-03	ci right 6.107711e-03	k: 680	n:120000
KS ci ratio: 7.148887e-03	ci left: 7.121776e-01	ci right 7.172954e-01	k: 85769	n:120000
NCOA6   120000 perm   32 sec   (3723 perm/sec)   p_kst 7.147417e-01   p_cons 5.666667e-03   p_joint 1.932500e-02

Joint ci ratio: 6.790686e-02	ci left: 2.414294e-02	ci right 2.584757e-02	k: 3248	n:130000
Cons ci ratio: 1.426285e-01	ci left: 5.364742e-03	ci right 6.195998e-03	k: 750	n:130000
KS ci ratio: 6.866023e-03	ci left: 7.124218e-01	ci right 7.173378e-01	k: 92935	n:130000
NCOA6   130000 perm   35 sec   (3669 perm/sec)   p_kst 7.148846e-01   p_cons 5.769231e-03   p_joint 2.498462e-02

Joint ci ratio: 7.573084e-02	ci left: 1.806692e-02	ci right 1.949597e-02	k: 2628	n:140000
Cons ci ratio: 1.376776e-01	ci left: 5.360629e-03	ci right 6.160050e-03	k: 805	n:140000
KS ci ratio: 6.628191e-03	ci left: 7.117753e-01	ci right 7.165158e-01	k: 99981	n:140000
NCOA6   140000 perm   39 sec   (3620 perm/sec)   p_kst 7.141500e-01   p_cons 5.750000e-03   p_joint 1.877143e-02

Joint ci ratio: 7.411777e-02	ci left: 1.762770e-02	ci right 1.899101e-02	k: 2745	n:150000
Cons ci ratio: 1.331311e-01	ci left: 5.363942e-03	ci right 6.135351e-03	k: 861	n:150000
KS ci ratio: 6.399626e-03	ci left: 7.121000e-01	ci right 7.166784e-01	k: 107159	n:150000
NCOA6   150000 perm   42 sec   (3576 perm/sec)   p_kst 7.143933e-01   p_cons 5.740000e-03   p_joint 1.830000e-02

Joint ci ratio: 7.281022e-02	ci left: 1.714546e-02	ci right 1.844710e-02	k: 2846	n:160000
Cons ci ratio: 1.295763e-01	ci left: 5.318830e-03	ci right 6.061754e-03	k: 909	n:160000
KS ci ratio: 6.199348e-03	ci left: 7.119793e-01	ci right 7.164130e-01	k: 114272	n:160000
NCOA6   160000 perm   45 sec   (3526 perm/sec)   p_kst 7.142000e-01   p_cons 5.681250e-03   p_joint 1.778750e-02

Joint ci ratio: 7.155624e-02	ci left: 1.672594e-02	ci right 1.797295e-02	k: 2948	n:170000
Cons ci ratio: 1.252442e-01	ci left: 5.370439e-03	ci right 6.093632e-03	k: 973	n:170000
KS ci ratio: 6.008447e-03	ci left: 7.124408e-01	ci right 7.167402e-01	k: 121481	n:170000
NCOA6   170000 perm   49 sec   (3484 perm/sec)   p_kst 7.145941e-01   p_cons 5.723529e-03   p_joint 1.734118e-02

Joint ci ratio: 7.050535e-02	ci left: 1.628771e-02	ci right 1.748348e-02	k: 3038	n:180000
Cons ci ratio: 1.215552e-01	ci left: 5.395130e-03	ci right 6.098709e-03	k: 1033	n:180000
KS ci ratio: 5.837009e-03	ci left: 7.126523e-01	ci right 7.168297e-01	k: 128654	n:180000
NCOA6   180000 perm   52 sec   (3443 perm/sec)   p_kst 7.147444e-01   p_cons 5.738889e-03   p_joint 1.687778e-02

Joint ci ratio: 6.745609e-02	ci left: 1.687373e-02	ci right 1.805685e-02	k: 3317	n:190000
Cons ci ratio: 1.184467e-01	ci left: 5.391960e-03	ci right 6.075884e-03	k: 1088	n:190000
KS ci ratio: 5.686421e-03	ci left: 7.123420e-01	ci right 7.164094e-01	k: 135732	n:190000
NCOA6   190000 perm   56 sec   (3402 perm/sec)   p_kst 7.143789e-01   p_cons 5.726316e-03   p_joint 1.745789e-02

Joint ci ratio: 6.437023e-02	ci left: 1.761865e-02	ci right 1.879537e-02	k: 3640	n:200000
Cons ci ratio: 1.152110e-01	ci left: 5.423309e-03	ci right 6.091139e-03	k: 1150	n:200000
KS ci ratio: 5.540794e-03	ci left: 7.125150e-01	ci right 7.164788e-01	k: 142900	n:200000
NCOA6   200000 perm   59 sec   (3364 perm/sec)   p_kst 7.145000e-01   p_cons 5.750000e-03   p_joint 1.820000e-02

Joint ci ratio: 6.414810e-02	ci left: 1.691066e-02	ci right 1.803605e-02	k: 3668	n:210000
Cons ci ratio: 1.122268e-01	ci left: 5.451901e-03	ci right 6.104712e-03	k: 1212	n:210000
KS ci ratio: 5.402908e-03	ci left: 7.128922e-01	ci right 7.167590e-01	k: 150114	n:210000
NCOA6   210000 perm   63 sec   (3324 perm/sec)   p_kst 7.148286e-01   p_cons 5.771429e-03   p_joint 1.746667e-02

Joint ci ratio: 6.347389e-02	ci left: 1.649971e-02	ci right 1.758579e-02	k: 3748	n:220000
Cons ci ratio: 1.098975e-01	ci left: 5.433882e-03	ci right 6.070155e-03	k: 1264	n:220000
KS ci ratio: 5.272937e-03	ci left: 7.133819e-01	ci right 7.171579e-01	k: 157360	n:220000
NCOA6   220000 perm   67 sec   (3286 perm/sec)   p_kst 7.152727e-01   p_cons 5.745455e-03   p_joint 1.703636e-02

Joint ci ratio: 6.136896e-02	ci left: 1.689523e-02	ci right 1.796915e-02	k: 4008	n:230000
Cons ci ratio: 1.071766e-01	ci left: 5.472569e-03	ci right 6.096507e-03	k: 1329	n:230000
KS ci ratio: 5.155973e-03	ci left: 7.135075e-01	ci right 7.172001e-01	k: 164532	n:230000
NCOA6   230000 perm   71 sec   (3249 perm/sec)   p_kst 7.153565e-01   p_cons 5.778261e-03   p_joint 1.742609e-02

Joint ci ratio: 5.973841e-02	ci left: 1.709821e-02	ci right 1.815516e-02	k: 4229	n:240000
Cons ci ratio: 1.047238e-01	ci left: 5.500093e-03	ci right 6.111934e-03	k: 1392	n:240000
KS ci ratio: 5.044655e-03	ci left: 7.137696e-01	ci right 7.173835e-01	k: 171739	n:240000
NCOA6   240000 perm   75 sec   (3214 perm/sec)   p_kst 7.155792e-01   p_cons 5.800000e-03   p_joint 1.762083e-02

Joint ci ratio: 5.737103e-02	ci left: 1.780579e-02	ci right 1.886142e-02	k: 4582	n:250000
Cons ci ratio: 1.026451e-01	ci left: 5.502177e-03	ci right 6.101367e-03	k: 1449	n:250000
KS ci ratio: 4.943694e-03	ci left: 7.137269e-01	ci right 7.172681e-01	k: 178875	n:250000
NCOA6   250000 perm   79 sec   (3179 perm/sec)   p_kst 7.155000e-01   p_cons 5.796000e-03   p_joint 1.832800e-02

Joint ci ratio: 5.640975e-02	ci left: 1.771998e-02	ci right 1.875234e-02	k: 4740	n:260000
Cons ci ratio: 1.007190e-01	ci left: 5.500462e-03	ci right 6.087560e-03	k: 1505	n:260000
KS ci ratio: 4.849065e-03	ci left: 7.136459e-01	ci right 7.171186e-01	k: 186000	n:260000
NCOA6   260000 perm   83 sec   (3143 perm/sec)   p_kst 7.153846e-01   p_cons 5.788462e-03   p_joint 1.823077e-02

Joint ci ratio: 5.629634e-02	ci left: 1.714387e-02	ci right 1.814059e-02	k: 4762	n:270000
Cons ci ratio: 9.886557e-02	ci left: 5.502583e-03	ci right 6.078473e-03	k: 1562	n:270000
KS ci ratio: 4.762786e-03	ci left: 7.133043e-01	ci right 7.167133e-01	k: 193053	n:270000
NCOA6   270000 perm   87 sec   (3109 perm/sec)   p_kst 7.150111e-01   p_cons 5.785185e-03   p_joint 1.763704e-02

Outputting figure to mutsig2_images.part000000000112/NCOA6.8_6244_270000_0.71501_0.0057852_0.017637.png
                gene_name: NCOA6
               theta_stop: 0.099 
                    nperm: 270000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.0058 
      ci_cons_bounds_left: 0.0055 
     ci_cons_bounds_right: 0.0061 
                  p_joint: 0.018 
     ci_joint_bounds_left: 0.017 
    ci_joint_bounds_right: 0.018 

Current progress: 27 percent done.
NCOR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.227943e-02	ci left: 9.049403e-01	ci right 9.162192e-01	k: 9107	n:10000
Cons ci ratio: 1.623630e-02	ci left: 8.465185e-01	ci right 8.604749e-01	k: 8536	n:10000
KS ci ratio: 1.608669e-02	ci left: 8.488632e-01	ci right 8.627288e-01	k: 8559	n:10000
NCOR1   10000 perm   2 sec   (4308 perm/sec)   p_kst 8.559000e-01   p_cons 8.536000e-01   p_joint 9.107000e-01

Outputting figure to mutsig2_images.part000000000112/NCOR1.8_7503_10000_0.8559_0.8536_0.9107.png
                gene_name: NCOR1
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.92 

Current progress: 29 percent done.
NCKAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.072525e-02	ci left: 2.266191e-01	ci right 2.433355e-01	k: 2349	n:10000
Cons ci ratio: 1.200793e-01	ci left: 9.048895e-02	ci right 1.021474e-01	k: 962	n:10000
KS ci ratio: 5.982159e-02	ci left: 2.913250e-01	ci right 3.093915e-01	k: 3003	n:10000
NCKAP1   10000 perm   2 sec   (5789 perm/sec)   p_kst 3.003000e-01   p_cons 9.620000e-02   p_joint 2.349000e-01

Joint ci ratio: 5.605908e-02	ci left: 1.909136e-01	ci right 2.019748e-01	k: 3928	n:20000
Cons ci ratio: 7.601789e-02	ci left: 1.128713e-01	ci right 1.218402e-01	k: 2346	n:20000
KS ci ratio: 4.166011e-02	ci left: 3.004121e-01	ci right 3.132441e-01	k: 6136	n:20000
NCKAP1   20000 perm   4 sec   (5112 perm/sec)   p_kst 3.068000e-01   p_cons 1.173000e-01   p_joint 1.964000e-01

Outputting figure to mutsig2_images.part000000000112/NCKAP1.7_3533_20000_0.3068_0.1173_0.1964.png
                gene_name: NCKAP1
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 31 percent done.
NCKAP5L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.303600e-02	ci left: 7.346186e-01	ci right 7.518395e-01	k: 7433	n:10000
KS ci ratio: 1.658537e-02	ci left: 8.410158e-01	ci right 8.551807e-01	k: 8482	n:10000
NCKAP5L   10000 perm   2 sec   (5324 perm/sec)   p_kst 8.482000e-01   p_cons 7.433000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000112/NCKAP5L.7_4049_10000_0.8482_0.7433_1.png
                gene_name: NCKAP5L
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 33 percent done.
NAP1L3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.715456e-02	ci left: 5.168576e-01	ci right 5.365269e-01	k: 5267	n:10000
Cons ci ratio: 4.164532e-02	ci left: 4.598782e-01	ci right 4.795394e-01	k: 4697	n:10000
KS ci ratio: 4.456744e-02	ci left: 4.263503e-01	ci right 4.458869e-01	k: 4361	n:10000
NAP1L3   10000 perm   2 sec   (6007 perm/sec)   p_kst 4.361000e-01   p_cons 4.697000e-01   p_joint 5.267000e-01

Outputting figure to mutsig2_images.part000000000112/NAP1L3.6_1525_10000_0.4361_0.4697_0.5267.png
                gene_name: NAP1L3
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 36 percent done.
NBPF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.584290e-02	ci left: 3.207846e-01	ci right 3.393145e-01	k: 3300	n:10000
Cons ci ratio: 1.271204e-02	ci left: 8.989819e-01	ci right 9.105811e-01	k: 9049	n:10000
KS ci ratio: 8.944993e-02	ci left: 1.538460e-01	ci right 1.683520e-01	k: 1610	n:10000
NBPF1   10000 perm   2 sec   (5750 perm/sec)   p_kst 1.610000e-01   p_cons 9.049000e-01   p_joint 3.300000e-01

Outputting figure to mutsig2_images.part000000000112/NBPF1.6_3517_10000_0.161_0.9049_0.33.png
                gene_name: NBPF1
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 38 percent done.
NCAPG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.660662e-02	ci left: 1.994895e-01	ci right 2.154812e-01	k: 2074	n:10000
Cons ci ratio: 3.301959e-02	ci left: 5.751689e-01	ci right 5.945816e-01	k: 5849	n:10000
KS ci ratio: 1.081046e-01	ci left: 1.098838e-01	ci right 1.225407e-01	k: 1161	n:10000
NCAPG2   10000 perm   2 sec   (5515 perm/sec)   p_kst 1.161000e-01   p_cons 5.849000e-01   p_joint 2.074000e-01

Joint ci ratio: 6.379530e-02	ci left: 1.537102e-01	ci right 1.638892e-01	k: 3175	n:20000
Cons ci ratio: 2.291246e-02	ci left: 5.872059e-01	ci right 6.008667e-01	k: 11881	n:20000
KS ci ratio: 7.696846e-02	ci left: 1.103641e-01	ci right 1.192483e-01	k: 2295	n:20000
NCAPG2   20000 perm   4 sec   (5006 perm/sec)   p_kst 1.147500e-01   p_cons 5.940500e-01   p_joint 1.587500e-01

Outputting figure to mutsig2_images.part000000000112/NCAPG2.6_3540_20000_0.11475_0.59405_0.15875.png
                gene_name: NCAPG2
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 40 percent done.
NCOA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.884086e-02	ci left: 3.821155e-01	ci right 4.013476e-01	k: 3917	n:10000
Cons ci ratio: 8.386407e-02	ci left: 1.717274e-01	ci right 1.868599e-01	k: 1792	n:10000
KS ci ratio: 3.181688e-02	ci left: 5.931307e-01	ci right 6.124094e-01	k: 6028	n:10000
NCOA1   10000 perm   2 sec   (5205 perm/sec)   p_kst 6.028000e-01   p_cons 1.792000e-01   p_joint 3.917000e-01

Outputting figure to mutsig2_images.part000000000112/NCOA1.6_4451_10000_0.6028_0.1792_0.3917.png
                gene_name: NCOA1
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 42 percent done.
NCOR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.333011e-02	ci left: 2.681458e-01	ci right 2.857843e-01	k: 2769	n:10000
Cons ci ratio: 9.635105e-03	ci left: 9.383791e-01	ci right 9.475607e-01	k: 9431	n:10000
KS ci ratio: 1.036150e-01	ci left: 1.186757e-01	ci right 1.317435e-01	k: 1251	n:10000
NCOR2   10000 perm   2 sec   (4597 perm/sec)   p_kst 1.251000e-01   p_cons 9.431000e-01   p_joint 2.769000e-01

Joint ci ratio: 4.580374e-02	ci left: 2.618707e-01	ci right 2.741968e-01	k: 5360	n:20000
Cons ci ratio: 6.848713e-03	ci left: 9.391838e-01	ci right 9.456868e-01	k: 18850	n:20000
KS ci ratio: 7.375725e-02	ci left: 1.191670e-01	ci right 1.283427e-01	k: 2474	n:20000
NCOR2   20000 perm   5 sec   (4188 perm/sec)   p_kst 1.237000e-01   p_cons 9.425000e-01   p_joint 2.680000e-01

Outputting figure to mutsig2_images.part000000000112/NCOR2.6_7757_20000_0.1237_0.9425_0.268.png
                gene_name: NCOR2
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 44 percent done.
NCAPG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.123146e-02	ci left: 2.817130e-01	ci right 2.996091e-01	k: 2906	n:10000
Cons ci ratio: 2.713657e-02	ci left: 6.667271e-01	ci right 6.851703e-01	k: 6760	n:10000
KS ci ratio: 1.010478e-01	ci left: 1.241518e-01	ci right 1.374641e-01	k: 1307	n:10000
NCAPG   10000 perm   2 sec   (5770 perm/sec)   p_kst 1.307000e-01   p_cons 6.760000e-01   p_joint 2.906000e-01

Joint ci ratio: 4.381751e-02	ci left: 2.794954e-01	ci right 2.920669e-01	k: 5715	n:20000
Cons ci ratio: 1.889631e-02	ci left: 6.761984e-01	ci right 6.891484e-01	k: 13654	n:20000
KS ci ratio: 6.989336e-02	ci left: 1.311297e-01	ci right 1.406765e-01	k: 2717	n:20000
NCAPG   20000 perm   4 sec   (5204 perm/sec)   p_kst 1.358500e-01   p_cons 6.827000e-01   p_joint 2.857500e-01

Outputting figure to mutsig2_images.part000000000112/NCAPG.5_3132_20000_0.13585_0.6827_0.28575.png
                gene_name: NCAPG
               theta_stop: 0.070 
                    nperm: 20000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 47 percent done.
NCOA7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.158652e-01	ci left: 9.671912e-02	ci right 1.087134e-01	k: 1026	n:10000
Cons ci ratio: 1.077899e-01	ci left: 1.104696e-01	ci right 1.231546e-01	k: 1167	n:10000
KS ci ratio: 9.379027e-02	ci left: 1.416816e-01	ci right 1.557237e-01	k: 1486	n:10000
NCOA7   10000 perm   2 sec   (5894 perm/sec)   p_kst 1.486000e-01   p_cons 1.167000e-01   p_joint 1.026000e-01

Joint ci ratio: 1.142358e-01	ci left: 5.241537e-02	ci right 5.881460e-02	k: 1111	n:20000
Cons ci ratio: 7.290257e-02	ci left: 1.216766e-01	ci right 1.309324e-01	k: 2525	n:20000
KS ci ratio: 6.777275e-02	ci left: 1.384219e-01	ci right 1.481820e-01	k: 2865	n:20000
NCOA7   20000 perm   4 sec   (5415 perm/sec)   p_kst 1.432500e-01   p_cons 1.262500e-01   p_joint 5.555000e-02

Joint ci ratio: 7.381212e-02	ci left: 8.275265e-02	ci right 8.912780e-02	k: 2577	n:30000
Cons ci ratio: 5.929244e-02	ci left: 1.233833e-01	ci right 1.309557e-01	k: 3814	n:30000
KS ci ratio: 5.399471e-02	ci left: 1.453835e-01	ci right 1.534845e-01	k: 4482	n:30000
NCOA7   30000 perm   6 sec   (5222 perm/sec)   p_kst 1.494000e-01   p_cons 1.271333e-01   p_joint 8.590000e-02

Outputting figure to mutsig2_images.part000000000112/NCOA7.5_2889_30000_0.1494_0.12713_0.0859.png
                gene_name: NCOA7
               theta_stop: 0.074 
                    nperm: 30000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.086 
     ci_joint_bounds_left: 0.083 
    ci_joint_bounds_right: 0.089 

Current progress: 49 percent done.
NCR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.751552e-02	ci left: 8.261534e-01	ci right 8.408517e-01	k: 8336	n:10000
Cons ci ratio: 3.112378e-02	ci left: 6.036732e-01	ci right 6.228608e-01	k: 6133	n:10000
KS ci ratio: 2.701897e-02	ci left: 6.686406e-01	ci right 6.870556e-01	k: 6779	n:10000
NCR1   10000 perm   1 sec   (7037 perm/sec)   p_kst 6.779000e-01   p_cons 6.133000e-01   p_joint 8.336000e-01

Outputting figure to mutsig2_images.part000000000112/NCR1.5_943_10000_0.6779_0.6133_0.8336.png
                gene_name: NCR1
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 51 percent done.
NARG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.411746e-02	ci left: 7.165376e-01	ci right 7.341309e-01	k: 7254	n:10000
KS ci ratio: 6.197770e-03	ci left: 9.724899e-01	ci right 9.786288e-01	k: 9757	n:10000
NARG2   10000 perm   2 sec   (6306 perm/sec)   p_kst 9.757000e-01   p_cons 7.254000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000112/NARG2.4_3009_10000_0.9757_0.7254_1.png
                gene_name: NARG2
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 53 percent done.
NARS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.285046e-02	ci left: 3.454159e-01	ci right 3.642687e-01	k: 3548	n:10000
Cons ci ratio: 1.991394e-01	ci left: 3.357607e-02	ci right 4.109654e-02	k: 372	n:10000
KS ci ratio: 8.879380e-02	ci left: 1.558095e-01	ci right 1.703873e-01	k: 1630	n:10000
NARS   10000 perm   1 sec   (6941 perm/sec)   p_kst 1.630000e-01   p_cons 3.720000e-02   p_joint 3.548000e-01

Joint ci ratio: 6.945044e-02	ci left: 1.326075e-01	ci right 1.421982e-01	k: 2747	n:20000
Cons ci ratio: 1.636116e-01	ci left: 2.561344e-02	ci right 3.022518e-02	k: 557	n:20000
KS ci ratio: 6.318152e-02	ci left: 1.562764e-01	ci right 1.665222e-01	k: 3227	n:20000
NARS   20000 perm   3 sec   (6134 perm/sec)   p_kst 1.613500e-01   p_cons 2.785000e-02   p_joint 1.373500e-01

Joint ci ratio: 5.848718e-02	ci left: 1.264112e-01	ci right 1.340605e-01	k: 3906	n:30000
Cons ci ratio: 1.326951e-01	ci left: 2.638812e-02	ci right 3.017064e-02	k: 847	n:30000
KS ci ratio: 5.138542e-02	ci left: 1.582757e-01	ci right 1.666565e-01	k: 4873	n:30000
NARS   30000 perm   5 sec   (5873 perm/sec)   p_kst 1.624333e-01   p_cons 2.823333e-02   p_joint 1.302000e-01

Joint ci ratio: 4.616021e-02	ci left: 1.492126e-01	ci right 1.562879e-01	k: 6109	n:40000
Cons ci ratio: 1.149527e-01	ci left: 2.662382e-02	ci right 2.989514e-02	k: 1129	n:40000
KS ci ratio: 4.453256e-02	ci left: 1.586491e-01	ci right 1.659000e-01	k: 6490	n:40000
NARS   40000 perm   7 sec   (5681 perm/sec)   p_kst 1.622500e-01   p_cons 2.822500e-02   p_joint 1.527250e-01

Joint ci ratio: 4.443218e-02	ci left: 1.316990e-01	ci right 1.377035e-01	k: 6734	n:50000
Cons ci ratio: 1.020941e-01	ci left: 2.717594e-02	ci right 3.011913e-02	k: 1431	n:50000
KS ci ratio: 3.968169e-02	ci left: 1.600498e-01	ci right 1.665493e-01	k: 8164	n:50000
NARS   50000 perm   9 sec   (5539 perm/sec)   p_kst 1.632800e-01   p_cons 2.862000e-02   p_joint 1.346800e-01

Joint ci ratio: 4.761389e-02	ci left: 9.907811e-02	ci right 1.039272e-01	k: 6089	n:60000
Cons ci ratio: 9.380188e-02	ci left: 2.695507e-02	ci right 2.962415e-02	k: 1696	n:60000
KS ci ratio: 3.632182e-02	ci left: 1.596058e-01	ci right 1.655268e-01	k: 9753	n:60000
NARS   60000 perm   11 sec   (5418 perm/sec)   p_kst 1.625500e-01   p_cons 2.826667e-02   p_joint 1.014833e-01

Outputting figure to mutsig2_images.part000000000112/NARS.4_1703_60000_0.16255_0.028267_0.10148.png
                gene_name: NARS
               theta_stop: 0.094 
                    nperm: 60000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.028 
      ci_cons_bounds_left: 0.027 
     ci_cons_bounds_right: 0.030 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.099 
    ci_joint_bounds_right: 0.10 

Current progress: 56 percent done.
NAV1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.662992e-02	ci left: 1.993910e-01	ci right 2.153799e-01	k: 2073	n:10000
Cons ci ratio: 2.825238e-02	ci left: 6.487080e-01	ci right 6.673999e-01	k: 6581	n:10000
KS ci ratio: 1.114983e-01	ci left: 1.038342e-01	ci right 1.161941e-01	k: 1099	n:10000
NAV1   10000 perm   2 sec   (5309 perm/sec)   p_kst 1.099000e-01   p_cons 6.581000e-01   p_joint 2.073000e-01

Joint ci ratio: 4.892953e-02	ci left: 2.369695e-01	ci right 2.489054e-01	k: 4858	n:20000
Cons ci ratio: 1.969267e-02	ci left: 6.579579e-01	ci right 6.710942e-01	k: 13291	n:20000
KS ci ratio: 7.932974e-02	ci left: 1.044674e-01	ci right 1.131467e-01	k: 2175	n:20000
NAV1   20000 perm   4 sec   (4811 perm/sec)   p_kst 1.087500e-01   p_cons 6.645500e-01   p_joint 2.429000e-01

Outputting figure to mutsig2_images.part000000000112/NAV1.4_5811_20000_0.10875_0.66455_0.2429.png
                gene_name: NAV1
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 58 percent done.
NBR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.337403e-02	ci left: 7.289600e-01	ci right 7.463014e-01	k: 7377	n:10000
Cons ci ratio: 2.230595e-02	ci left: 7.468514e-01	ci right 7.637996e-01	k: 7554	n:10000
KS ci ratio: 3.060783e-02	ci left: 6.116083e-01	ci right 6.307211e-01	k: 6212	n:10000
NBR1   10000 perm   2 sec   (5938 perm/sec)   p_kst 6.212000e-01   p_cons 7.554000e-01   p_joint 7.377000e-01

Outputting figure to mutsig2_images.part000000000112/NBR1.4_2981_10000_0.6212_0.7554_0.7377.png
                gene_name: NBR1
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 60 percent done.
NCAM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.763342e-02	ci left: 6.586720e-01	ci right 6.772301e-01	k: 6680	n:10000
Cons ci ratio: 8.516918e-02	ci left: 1.673034e-01	ci right 1.822866e-01	k: 1747	n:10000
KS ci ratio: 1.976591e-02	ci left: 7.892847e-01	ci right 8.051418e-01	k: 7973	n:10000
NCAM1   10000 perm   2 sec   (6102 perm/sec)   p_kst 7.973000e-01   p_cons 1.747000e-01   p_joint 6.680000e-01

Outputting figure to mutsig2_images.part000000000112/NCAM1.4_2855_10000_0.7973_0.1747_0.668.png
                gene_name: NCAM1
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 62 percent done.
NCOA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.425892e-02	ci left: 5.571200e-01	ci right 5.766410e-01	k: 5669	n:10000
KS ci ratio: 8.020443e-03	ci left: 9.558684e-01	ci right 9.636608e-01	k: 9599	n:10000
NCOA3   10000 perm   2 sec   (5444 perm/sec)   p_kst 9.599000e-01   p_cons 5.669000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000112/NCOA3.4_4389_10000_0.9599_0.5669_1.png
                gene_name: NCOA3
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 64 percent done.
NARF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.195230e-02	ci left: 9.093624e-01	ci right 9.203945e-01	k: 9150	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
NARF   10000 perm   1 sec   (6776 perm/sec)   p_kst 1   p_cons 9.150000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000112/NARF.3_1557_10000_1_0.915_1.png
                gene_name: NARF
               theta_stop: 0.012 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
NAT10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.879861e-02	ci left: 2.985619e-01	ci right 3.167503e-01	k: 3076	n:10000
Cons ci ratio: 2.704372e-02	ci left: 6.682378e-01	ci right 6.866587e-01	k: 6775	n:10000
KS ci ratio: 5.879861e-02	ci left: 2.985619e-01	ci right 3.167503e-01	k: 3076	n:10000
NAT10   10000 perm   2 sec   (6412 perm/sec)   p_kst 3.076000e-01   p_cons 6.775000e-01   p_joint 3.076000e-01

Outputting figure to mutsig2_images.part000000000112/NAT10.3_3190_10000_0.3076_0.6775_0.3076.png
                gene_name: NAT10
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 69 percent done.
NBEAL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.295548e-02	ci left: 4.445057e-01	ci right 4.641209e-01	k: 4543	n:10000
Cons ci ratio: 1.769821e-02	ci left: 8.232038e-01	ci right 8.380031e-01	k: 8307	n:10000
KS ci ratio: 8.760919e-02	ci left: 1.594429e-01	ci right 1.741517e-01	k: 1667	n:10000
NBEAL1   10000 perm   2 sec   (4680 perm/sec)   p_kst 1.667000e-01   p_cons 8.307000e-01   p_joint 4.543000e-01

Outputting figure to mutsig2_images.part000000000112/NBEAL1.3_8301_10000_0.1667_0.8307_0.4543.png
                gene_name: NBEAL1
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 71 percent done.
NBEAL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.968333e-03	ci left: 9.563913e-01	ci right 9.641376e-01	k: 9604	n:10000
KS ci ratio: 3.410571e-02	ci left: 5.593253e-01	ci right 5.788345e-01	k: 5691	n:10000
NBEAL2   10000 perm   2 sec   (4718 perm/sec)   p_kst 5.691000e-01   p_cons 9.604000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000112/NBEAL2.3_8481_10000_0.5691_0.9604_1.png
                gene_name: NBEAL2
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
NBPF14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.722442e-02	ci left: 8.308338e-01	ci right 8.453686e-01	k: 8382	n:10000
Cons ci ratio: 2.477993e-02	ci left: 7.058890e-01	ci right 7.237019e-01	k: 7135	n:9981
KS ci ratio: 4.415312e-02	ci left: 4.309378e-01	ci right 4.504967e-01	k: 4407	n:10000
NBPF14   10000 perm   2 sec   (6325 perm/sec)   p_kst 4.407000e-01   p_cons 7.148582e-01   p_joint 8.382000e-01

Outputting figure to mutsig2_images.part000000000112/NBPF14.3_2854_10000_0.4407_0.71486_0.8382.png
                gene_name: NBPF14
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 76 percent done.
NCF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.031471e-02	ci left: 7.801599e-01	ci right 7.962719e-01	k: 7883	n:10000
Cons ci ratio: 5.633897e-02	ci left: 3.169137e-01	ci right 3.353876e-01	k: 3261	n:10000
KS ci ratio: 4.258492e-02	ci left: 4.487971e-01	ci right 4.684270e-01	k: 4586	n:10000
NCF2   10000 perm   1 sec   (7043 perm/sec)   p_kst 4.586000e-01   p_cons 3.261000e-01   p_joint 7.883000e-01

Outputting figure to mutsig2_images.part000000000112/NCF2.3_1641_10000_0.4586_0.3261_0.7883.png
                gene_name: NCF2
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 78 percent done.
NCSTN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.748407e-02	ci left: 6.610882e-01	ci right 6.796124e-01	k: 6704	n:10000
Cons ci ratio: 4.307694e-02	ci left: 4.431087e-01	ci right 4.627188e-01	k: 4529	n:10000
KS ci ratio: 2.440813e-02	ci left: 7.116922e-01	ci right 7.293792e-01	k: 7206	n:10000
NCSTN   10000 perm   2 sec   (6441 perm/sec)   p_kst 7.206000e-01   p_cons 4.529000e-01   p_joint 6.704000e-01

Outputting figure to mutsig2_images.part000000000112/NCSTN.3_2198_10000_0.7206_0.4529_0.6704.png
                gene_name: NCSTN
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 80 percent done.
NDOR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.321256e-02	ci left: 2.145771e-01	ci right 2.309847e-01	k: 2227	n:10000
Cons ci ratio: 1.725017e-01	ci left: 4.485094e-02	ci right 5.341415e-02	k: 490	n:10000
KS ci ratio: 1.167382e-02	ci left: 9.130677e-01	ci right 9.238870e-01	k: 9186	n:10000
NDOR1   10000 perm   2 sec   (6644 perm/sec)   p_kst 9.186000e-01   p_cons 4.900000e-02   p_joint 2.227000e-01

Joint ci ratio: 4.330263e-02	ci left: 2.843133e-01	ci right 2.969477e-01	k: 5812	n:20000
Cons ci ratio: 1.278387e-01	ci left: 4.202288e-02	ci right 4.781036e-02	k: 897	n:20000
KS ci ratio: 8.321697e-03	ci left: 9.134479e-01	ci right 9.211303e-01	k: 18347	n:20000
NDOR1   20000 perm   3 sec   (5874 perm/sec)   p_kst 9.173500e-01   p_cons 4.485000e-02   p_joint 2.906000e-01

Joint ci ratio: 4.738708e-02	ci left: 1.813136e-01	ci right 1.901474e-01	k: 5571	n:30000
Cons ci ratio: 1.054925e-01	ci left: 4.167427e-02	ci right 4.634789e-02	k: 1319	n:30000
KS ci ratio: 6.742545e-03	ci left: 9.153466e-01	ci right 9.215721e-01	k: 27555	n:30000
NDOR1   30000 perm   5 sec   (5629 perm/sec)   p_kst 9.185000e-01   p_cons 4.396667e-02   p_joint 1.857000e-01

Joint ci ratio: 3.918139e-02	ci left: 1.962135e-01	ci right 2.040801e-01	k: 8005	n:40000
Cons ci ratio: 8.664882e-02	ci left: 4.656204e-02	ci right 5.080379e-02	k: 1946	n:40000
KS ci ratio: 5.815591e-03	ci left: 9.163847e-01	ci right 9.217542e-01	k: 36764	n:40000
NDOR1   40000 perm   7 sec   (5493 perm/sec)   p_kst 9.191000e-01   p_cons 4.865000e-02   p_joint 2.001250e-01

Outputting figure to mutsig2_images.part000000000112/NDOR1.3_1877_40000_0.9191_0.04865_0.20012.png
                gene_name: NDOR1
               theta_stop: 0.087 
                    nperm: 40000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.049 
      ci_cons_bounds_left: 0.047 
     ci_cons_bounds_right: 0.051 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.20 

Current progress: 82 percent done.
NAPEPLD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.524235e-02	ci left: 3.255497e-01	ci right 3.441466e-01	k: 3348	n:10000
Cons ci ratio: 4.152016e-02	ci left: 4.613760e-01	ci right 4.810407e-01	k: 4712	n:10000
KS ci ratio: 1.060498e-01	ci left: 1.137899e-01	ci right 1.266323e-01	k: 1201	n:10000
NAPEPLD   10000 perm   1 sec   (7386 perm/sec)   p_kst 1.201000e-01   p_cons 4.712000e-01   p_joint 3.348000e-01

Joint ci ratio: 2.541963e-02	ci left: 5.362155e-01	ci right 5.500720e-01	k: 10863	n:20000
Cons ci ratio: 2.973237e-02	ci left: 4.580180e-01	ci right 4.718921e-01	k: 9299	n:20000
KS ci ratio: 7.497220e-02	ci left: 1.157235e-01	ci right 1.247872e-01	k: 2404	n:20000
NAPEPLD   20000 perm   3 sec   (6495 perm/sec)   p_kst 1.202000e-01   p_cons 4.649500e-01   p_joint 5.431500e-01

Outputting figure to mutsig2_images.part000000000112/NAPEPLD.2_1198_20000_0.1202_0.46495_0.54315.png
                gene_name: NAPEPLD
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.55 

Current progress: 84 percent done.
NARFL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.404356e-02	ci left: 8.799154e-01	ci right 8.924587e-01	k: 8863	n:10000
KS ci ratio: 6.503433e-03	ci left: 9.699492e-01	ci right 9.763711e-01	k: 9733	n:10000
NARFL   10000 perm   1 sec   (6784 perm/sec)   p_kst 9.733000e-01   p_cons 8.863000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000112/NARFL.2_1475_10000_0.9733_0.8863_1.png
                gene_name: NARFL
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
NARS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.482583e-02	ci left: 8.682565e-01	ci right 8.813243e-01	k: 8749	n:10000
KS ci ratio: 1.133519e-02	ci left: 9.174977e-01	ci right 9.280545e-01	k: 9229	n:10000
NARS2   10000 perm   1 sec   (7394 perm/sec)   p_kst 9.229000e-01   p_cons 8.749000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000112/NARS2.2_1490_10000_0.9229_0.8749_1.png
                gene_name: NARS2
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
NAT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.122884e-02	ci left: 6.020664e-01	ci right 6.212685e-01	k: 6117	n:10000
KS ci ratio: 9.670904e-03	ci left: 9.379643e-01	ci right 9.471758e-01	k: 9427	n:10000
NAT2   10000 perm   1 sec   (7420 perm/sec)   p_kst 9.427000e-01   p_cons 6.117000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000112/NAT2.2_877_10000_0.9427_0.6117_1.png
                gene_name: NAT2
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
NCAPH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.985006e-02	ci left: 2.911267e-01	ci right 3.091898e-01	k: 3001	n:10000
Cons ci ratio: 8.449635e-02	ci left: 1.695643e-01	ci right 1.846243e-01	k: 1770	n:10000
KS ci ratio: 1.597573e-02	ci left: 8.505966e-01	ci right 8.643944e-01	k: 8576	n:10000
NCAPH2   10000 perm   1 sec   (7087 perm/sec)   p_kst 8.576000e-01   p_cons 1.770000e-01   p_joint 3.001000e-01

Outputting figure to mutsig2_images.part000000000112/NCAPH2.2_1940_10000_0.8576_0.177_0.3001.png
                gene_name: NCAPH2
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 93 percent done.
NCBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.000383e-01	ci left: 1.264020e-01	ci right 1.398125e-01	k: 1330	n:10000
KS ci ratio: 2.261365e-02	ci left: 7.416944e-01	ci right 7.587596e-01	k: 7503	n:10000
NCBP1   10000 perm   1 sec   (6959 perm/sec)   p_kst 7.503000e-01   p_cons 1.330000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 7.172118e-02	ci left: 1.252697e-01	ci right 1.346382e-01	k: 2598	n:20000
KS ci ratio: 1.609494e-02	ci left: 7.417710e-01	ci right 7.538569e-01	k: 14957	n:20000
NCBP1   20000 perm   4 sec   (5709 perm/sec)   p_kst 7.478500e-01   p_cons 1.299000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000112/NCBP1.2_2465_20000_0.74785_0.1299_1.png
                gene_name: NCBP1
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.13 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
NCEH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.987073e-02	ci left: 3.722635e-01	ci right 3.914054e-01	k: 3818	n:10000
Cons ci ratio: 5.835992e-02	ci left: 3.017350e-01	ci right 3.199753e-01	k: 3108	n:10000
KS ci ratio: 4.296414e-02	ci left: 4.444059e-01	ci right 4.640208e-01	k: 4542	n:10000
NCEH1   10000 perm   1 sec   (7618 perm/sec)   p_kst 4.542000e-01   p_cons 3.108000e-01   p_joint 3.818000e-01

Outputting figure to mutsig2_images.part000000000112/NCEH1.2_1367_10000_0.4542_0.3108_0.3818.png
                gene_name: NCEH1
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 98 percent done.
NCK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.310676e-02	ci left: 8.934402e-01	ci right 9.053260e-01	k: 8995	n:10000
Cons ci ratio: 6.903923e-03	ci left: 9.664666e-01	ci right 9.732560e-01	k: 9700	n:10000
KS ci ratio: 1.570014e-02	ci left: 8.548806e-01	ci right 8.685080e-01	k: 8618	n:10000
NCK1   10000 perm   1 sec   (7536 perm/sec)   p_kst 8.618000e-01   p_cons 9.700000e-01   p_joint 8.995000e-01

Outputting figure to mutsig2_images.part000000000112/NCK1.2_1146_10000_0.8618_0.97_0.8995.png
                gene_name: NCK1
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.91 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000112
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 112 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1729>
Subject: Job 8004302: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1729>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000113> was used as the working directory.
Started at Sun Nov 11 15:09:11 2012
Results reported at Sun Nov 11 15:14:38 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000113.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000113.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 113  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000113.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    328.32 sec.
    Max Memory :      4794 MB
    Max Swap   :      7203 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
113
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 113
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 113: processing genes 10134 - 10223
Calculating significance of each gene.
Using projection method.
10134	NDP	1
10135	NDRG1	1.248520e-01
10136	NDRG2	1
10137	NDRG3	4.247032e-01
10138	NDRG4	1
10139	NDST1	5.999171e-01
10140	NDST2	8.708734e-01
10141	NDST3	7.220844e-01
10142	NDST4	1.162517e-01
10143	NDUFA1	1
10144	NDUFA10	8.062595e-02
10145	NDUFA11	1
10146	NDUFA12	1
10147	NDUFA13	6.593119e-02
10148	NDUFA2	1
10149	NDUFA3	1
10150	NDUFA4	1
10151	NDUFA4L2	1
10152	NDUFA5	1
10153	NDUFA6	1
10154	NDUFA7	3.803368e-01
10155	NDUFA8	1
10156	NDUFA9	1
10157	NDUFAB1	1.682072e-01
10158	NDUFAF1	3.943037e-01
10159	NDUFAF2	1
10160	NDUFAF3	1
10161	NDUFAF4	2.581360e-01
10162	NDUFB1	3.893802e-01
10163	NDUFB10	1
10164	NDUFB11	1
10165	NDUFB2	1
10166	NDUFB3	1
10167	NDUFB4	1
10168	NDUFB5	6.919299e-02
10169	NDUFB6	1.542162e-01
10170	NDUFB7	1.024634e-02
10171	NDUFB8	1.722765e-01
10172	NDUFB9	4.181133e-01
10173	NDUFC1	1
10174	NDUFC2	1
10175	NDUFS1	2.241143e-01
10176	NDUFS2	1
10177	NDUFS3	1
10178	NDUFS4	1
10179	NDUFS5	1
10180	NDUFS6	1.992015e-01
10181	NDUFS7	1
10182	NDUFS8	1
10183	NDUFV1	6.219353e-01
10184	NDUFV2	2.523779e-01
10185	NDUFV3	1
10186	NEB	1
10187	NEBL	3.609527e-02
10188	NECAB1	1
10189	NECAB2	7.399318e-01
10190	NECAB3	1
10191	NECAP1	3.720875e-01
10192	NECAP2	1
10193	NEDD1	8.860450e-01
10194	NEDD4	9.835729e-01
10195	NEDD4L	1
10196	NEDD8	1
10197	NEDD9	1
10198	NEFH	6.754105e-01
10199	NEFL	1
10200	NEFM	1.309204e-01
10201	NEGR1	6.315455e-01
10202	NEIL1	5.341913e-01
10203	NEIL2	5.463350e-01
10204	NEIL3	7.769599e-01
10205	NEK1	8.599391e-01
10206	NEK10	4.338569e-01
10207	NEK11	8.991458e-01
10208	NEK2	1
10209	NEK3	1
10210	NEK4	8.218929e-01
10211	NEK5	1.638225e-01
10212	NEK6	5.269014e-01
10213	NEK7	1
10214	NEK8	2.033678e-01
10215	NEK9	5.039342e-01
10216	NELF	4.063342e-01
10217	NELL1	3.855665e-02
10218	NELL2	2.067373e-01
10219	NENF	1
10220	NEO1	4.170192e-01
10221	NES	1.803159e-01
10222	NET1	1
10223	NETO1	8.910461e-01
Done

Running MutSig 2:
Scatter job 113: processing genes 10134 - 10223
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
NEB
Processing conservation and coverage...
37% 75% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.225082e-01	ci left: 2.674401e-02	ci right 3.353336e-02	k: 300	n:10000
Cons ci ratio: 8.686029e-02	ci left: 1.618004e-01	ci right 1.765928e-01	k: 1691	n:10000
KS ci ratio: 1.623245e-01	ci left: 5.061180e-02	ci right 5.964956e-02	k: 550	n:10000
NEB   10000 perm   5 sec   (2148 perm/sec)   p_kst 5.500000e-02   p_cons 1.691000e-01   p_joint 3.000000e-02

Joint ci ratio: 1.322148e-01	ci left: 3.931020e-02	ci right 4.492391e-02	k: 841	n:20000
Cons ci ratio: 6.241084e-02	ci left: 1.595836e-01	ci right 1.699141e-01	k: 3294	n:20000
KS ci ratio: 1.145086e-01	ci left: 5.217214e-02	ci right 5.855790e-02	k: 1106	n:20000
NEB   20000 perm   12 sec   (1723 perm/sec)   p_kst 5.530000e-02   p_cons 1.647000e-01   p_joint 4.205000e-02

Joint ci ratio: 1.033013e-01	ci left: 4.342931e-02	ci right 4.819248e-02	k: 1373	n:30000
Cons ci ratio: 5.105437e-02	ci left: 1.600240e-01	ci right 1.684412e-01	k: 4926	n:30000
KS ci ratio: 9.375085e-02	ci left: 5.247933e-02	ci right 5.767393e-02	k: 1651	n:30000
NEB   30000 perm   17 sec   (1787 perm/sec)   p_kst 5.503333e-02   p_cons 1.642000e-01   p_joint 4.576667e-02

Joint ci ratio: 8.282857e-02	ci left: 5.082452e-02	ci right 5.524065e-02	k: 2120	n:40000
Cons ci ratio: 4.446308e-02	ci left: 1.590703e-01	ci right 1.663288e-01	k: 6507	n:40000
KS ci ratio: 8.295254e-02	ci left: 5.067747e-02	ci right 5.508772e-02	k: 2114	n:40000
NEB   40000 perm   22 sec   (1803 perm/sec)   p_kst 5.285000e-02   p_cons 1.626750e-01   p_joint 5.300000e-02

Outputting figure to mutsig2_images.part000000000113/NEB.30_26407_40000_0.05285_0.16267_0.053.png
                gene_name: NEB
               theta_stop: 0.083 
                    nperm: 40000 
                     p_ks: 0.053 
        ci_ks_bounds_left: 0.051 
       ci_ks_bounds_right: 0.055 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.053 
     ci_joint_bounds_left: 0.051 
    ci_joint_bounds_right: 0.055 

Current progress: 3 percent done.
NDST4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.454701e-02	ci left: 8.724474e-01	ci right 8.853309e-01	k: 8790	n:10000
Cons ci ratio: 4.466723e-02	ci left: 4.252535e-01	ci right 4.447844e-01	k: 4350	n:10000
KS ci ratio: 3.079670e-02	ci left: 6.086951e-01	ci right 6.278360e-01	k: 6183	n:10000
NDST4   10000 perm   2 sec   (5129 perm/sec)   p_kst 6.183000e-01   p_cons 4.350000e-01   p_joint 8.790000e-01

Outputting figure to mutsig2_images.part000000000113/NDST4.13_2671_10000_0.6183_0.435_0.879.png
                gene_name: NDST4
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.89 

Current progress: 5 percent done.
NES
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.139078e-02	ci left: 9.167762e-01	ci right 9.273764e-01	k: 9222	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
NES   10000 perm   2 sec   (4928 perm/sec)   p_kst 1   p_cons 9.222000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000113/NES.13_4882_10000_1_0.9222_1.png
                gene_name: NES
               theta_stop: 0.011 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 8 percent done.
NELL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.391837e-02	ci left: 5.620320e-01	ci right 5.815262e-01	k: 5718	n:10000
Cons ci ratio: 2.909192e-02	ci left: 6.353290e-01	ci right 6.541866e-01	k: 6448	n:10000
KS ci ratio: 5.445811e-02	ci left: 3.319049e-01	ci right 3.505876e-01	k: 3412	n:10000
NELL1   10000 perm   2 sec   (5406 perm/sec)   p_kst 3.412000e-01   p_cons 6.448000e-01   p_joint 5.718000e-01

Outputting figure to mutsig2_images.part000000000113/NELL1.10_2513_10000_0.3412_0.6448_0.5718.png
                gene_name: NELL1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 11 percent done.
NEBL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.352500e-02	ci left: 7.264344e-01	ci right 7.438284e-01	k: 7352	n:10000
Cons ci ratio: 3.969896e-02	ci left: 4.837540e-01	ci right 5.034497e-01	k: 4936	n:10000
KS ci ratio: 3.503264e-02	ci left: 5.460965e-01	ci right 5.656709e-01	k: 5559	n:10000
NEBL   10000 perm   2 sec   (5225 perm/sec)   p_kst 5.559000e-01   p_cons 4.936000e-01   p_joint 7.352000e-01

Outputting figure to mutsig2_images.part000000000113/NEBL.9_3530_10000_0.5559_0.4936_0.7352.png
                gene_name: NEBL
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.74 

Current progress: 13 percent done.
NELL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.105301e-02	ci left: 3.613218e-01	ci right 3.803535e-01	k: 3708	n:10000
Cons ci ratio: 7.468054e-02	ci left: 2.078695e-01	ci right 2.240963e-01	k: 2159	n:10000
KS ci ratio: 4.695702e-02	ci left: 4.009353e-01	ci right 4.203168e-01	k: 4106	n:10000
NELL2   10000 perm   2 sec   (5821 perm/sec)   p_kst 4.106000e-01   p_cons 2.159000e-01   p_joint 3.708000e-01

Outputting figure to mutsig2_images.part000000000113/NELL2.9_2783_10000_0.4106_0.2159_0.3708.png
                gene_name: NELL2
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 16 percent done.
NEO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.061858e-02	ci left: 7.750931e-01	ci right 7.913416e-01	k: 7833	n:10000
Cons ci ratio: 4.090057e-02	ci left: 4.688665e-01	ci right 4.885459e-01	k: 4787	n:10000
KS ci ratio: 1.971700e-02	ci left: 7.900960e-01	ci right 8.059300e-01	k: 7981	n:10000
NEO1   10000 perm   2 sec   (5186 perm/sec)   p_kst 7.981000e-01   p_cons 4.787000e-01   p_joint 7.833000e-01

Outputting figure to mutsig2_images.part000000000113/NEO1.8_4502_10000_0.7981_0.4787_0.7833.png
                gene_name: NEO1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.79 

Current progress: 18 percent done.
NETO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.539254e-02	ci left: 6.953478e-01	ci right 7.133330e-01	k: 7044	n:10000
Cons ci ratio: 4.577464e-02	ci left: 4.132907e-01	ci right 4.327542e-01	k: 4230	n:10000
KS ci ratio: 3.551763e-02	ci left: 5.392844e-01	ci right 5.588870e-01	k: 5491	n:10000
NETO1   10000 perm   2 sec   (6454 perm/sec)   p_kst 5.491000e-01   p_cons 4.230000e-01   p_joint 7.044000e-01

Outputting figure to mutsig2_images.part000000000113/NETO1.7_1680_10000_0.5491_0.423_0.7044.png
                gene_name: NETO1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.71 

Current progress: 21 percent done.
NEFM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.216718e-02	ci left: 4.536882e-01	ci right 4.733331e-01	k: 4635	n:10000
Cons ci ratio: 4.138712e-02	ci left: 4.629738e-01	ci right 4.826420e-01	k: 4728	n:10000
KS ci ratio: 5.953818e-02	ci left: 2.933074e-01	ci right 3.114079e-01	k: 3023	n:10000
NEFM   10000 perm   2 sec   (6097 perm/sec)   p_kst 3.023000e-01   p_cons 4.728000e-01   p_joint 4.635000e-01

Outputting figure to mutsig2_images.part000000000113/NEFM.6_2763_10000_0.3023_0.4728_0.4635.png
                gene_name: NEFM
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 24 percent done.
NEK5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.059909e-02	ci left: 2.859734e-01	ci right 3.039462e-01	k: 2949	n:10000
Cons ci ratio: 1.519441e-01	ci left: 5.764078e-02	ci right 6.721608e-02	k: 623	n:10000
KS ci ratio: 2.063679e-02	ci left: 7.747892e-01	ci right 7.910457e-01	k: 7830	n:10000
NEK5   10000 perm   2 sec   (6352 perm/sec)   p_kst 7.830000e-01   p_cons 6.230000e-02   p_joint 2.949000e-01

Joint ci ratio: 5.794743e-02	ci left: 1.807766e-01	ci right 1.916148e-01	k: 3723	n:20000
Cons ci ratio: 1.155061e-01	ci left: 5.129666e-02	ci right 5.763366e-02	k: 1088	n:20000
KS ci ratio: 1.464380e-02	ci left: 7.760101e-01	ci right 7.875078e-01	k: 15636	n:20000
NEK5   20000 perm   3 sec   (5821 perm/sec)   p_kst 7.818000e-01   p_cons 5.440000e-02   p_joint 1.861500e-01

Joint ci ratio: 4.044393e-02	ci left: 2.336202e-01	ci right 2.432972e-01	k: 7153	n:30000
Cons ci ratio: 8.897606e-02	ci left: 5.805662e-02	ci right 6.349550e-02	k: 1822	n:30000
KS ci ratio: 1.203014e-02	ci left: 7.749665e-01	ci right 7.843793e-01	k: 23391	n:30000
NEK5   30000 perm   6 sec   (5420 perm/sec)   p_kst 7.797000e-01   p_cons 6.073333e-02   p_joint 2.384333e-01

Outputting figure to mutsig2_images.part000000000113/NEK5.5_2207_30000_0.7797_0.060733_0.23843.png
                gene_name: NEK5
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.061 
      ci_cons_bounds_left: 0.058 
     ci_cons_bounds_right: 0.063 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 26 percent done.
NDST1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.230038e-02	ci left: 1.457019e-01	ci right 1.599010e-01	k: 1527	n:10000
Cons ci ratio: 1.629514e-01	ci left: 5.022725e-02	ci right 5.923435e-02	k: 546	n:10000
KS ci ratio: 3.145274e-02	ci left: 5.986524e-01	ci right 6.178845e-01	k: 6083	n:10000
NDST1   10000 perm   2 sec   (6573 perm/sec)   p_kst 6.083000e-01   p_cons 5.460000e-02   p_joint 1.527000e-01

Joint ci ratio: 3.190413e-02	ci left: 4.232241e-01	ci right 4.369962e-01	k: 8602	n:20000
Cons ci ratio: 1.130035e-01	ci left: 5.353447e-02	ci right 5.999515e-02	k: 1134	n:20000
KS ci ratio: 2.214606e-02	ci left: 6.035507e-01	ci right 6.171172e-01	k: 12207	n:20000
NDST1   20000 perm   3 sec   (5844 perm/sec)   p_kst 6.103500e-01   p_cons 5.670000e-02   p_joint 4.301000e-01

Joint ci ratio: 2.601676e-02	ci left: 4.251202e-01	ci right 4.363599e-01	k: 12922	n:30000
Cons ci ratio: 9.143084e-02	ci left: 5.508768e-02	ci right 6.039837e-02	k: 1731	n:30000
KS ci ratio: 1.811355e-02	ci left: 6.039858e-01	ci right 6.150597e-01	k: 18286	n:30000
NDST1   30000 perm   5 sec   (5471 perm/sec)   p_kst 6.095333e-01   p_cons 5.770000e-02   p_joint 4.307333e-01

Outputting figure to mutsig2_images.part000000000113/NDST1.4_2705_30000_0.60953_0.0577_0.43073.png
                gene_name: NDST1
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.058 
      ci_cons_bounds_left: 0.055 
     ci_cons_bounds_right: 0.060 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.44 

Current progress: 29 percent done.
NDST3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.155120e-02	ci left: 7.594982e-01	ci right 7.761455e-01	k: 7679	n:10000
Cons ci ratio: 3.581263e-02	ci left: 5.351780e-01	ci right 5.547957e-01	k: 5450	n:10000
KS ci ratio: 3.090770e-02	ci left: 6.069875e-01	ci right 6.261445e-01	k: 6166	n:10000
NDST3   10000 perm   2 sec   (6503 perm/sec)   p_kst 6.166000e-01   p_cons 5.450000e-01   p_joint 7.679000e-01

Outputting figure to mutsig2_images.part000000000113/NDST3.4_2674_10000_0.6166_0.545_0.7679.png
                gene_name: NDST3
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 32 percent done.
NDUFS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.375935e-02	ci left: 5.643380e-01	ci right 5.838188e-01	k: 5741	n:10000
Cons ci ratio: 8.998313e-02	ci left: 1.522755e-01	ci right 1.667234e-01	k: 1594	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
NDUFS1   10000 perm   2 sec   (6316 perm/sec)   p_kst 1   p_cons 1.594000e-01   p_joint 5.741000e-01

Outputting figure to mutsig2_images.part000000000113/NDUFS1.4_2256_10000_1_0.1594_0.5741.png
                gene_name: NDUFS1
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 34 percent done.
NEK8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.776711e-02	ci left: 1.589518e-01	ci right 1.736431e-01	k: 1662	n:10000
Cons ci ratio: 1.245959e-02	ci left: 9.024739e-01	ci right 9.138870e-01	k: 9083	n:10000
KS ci ratio: 1.175954e-01	ci left: 9.408985e-02	ci right 1.059443e-01	k: 999	n:10000
NEK8   10000 perm   2 sec   (6086 perm/sec)   p_kst 9.990000e-02   p_cons 9.083000e-01   p_joint 1.662000e-01

Joint ci ratio: 4.894283e-02	ci left: 2.368703e-01	ci right 2.488045e-01	k: 4856	n:20000
Cons ci ratio: 8.702650e-03	ci left: 9.062549e-01	ci right 9.142254e-01	k: 18206	n:20000
KS ci ratio: 8.565064e-02	ci left: 9.072523e-02	ci right 9.889301e-02	k: 1895	n:20000
NEK8   20000 perm   4 sec   (5484 perm/sec)   p_kst 9.475000e-02   p_cons 9.103000e-01   p_joint 2.428000e-01

Outputting figure to mutsig2_images.part000000000113/NEK8.4_2139_20000_0.09475_0.9103_0.2428.png
                gene_name: NEK8
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.095 
        ci_ks_bounds_left: 0.091 
       ci_ks_bounds_right: 0.099 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 37 percent done.
NEK9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.358403e-02	ci left: 2.665620e-01	ci right 2.841691e-01	k: 2753	n:10000
Cons ci ratio: 2.394432e-01	ci left: 2.296967e-02	ci right 2.931046e-02	k: 260	n:10000
KS ci ratio: 2.442025e-02	ci left: 7.114903e-01	ci right 7.291812e-01	k: 7204	n:10000
NEK9   10000 perm   2 sec   (6078 perm/sec)   p_kst 7.204000e-01   p_cons 2.600000e-02   p_joint 2.753000e-01

Joint ci ratio: 4.041102e-02	ci left: 3.134372e-01	ci right 3.264152e-01	k: 6398	n:20000
Cons ci ratio: 1.715217e-01	ci left: 2.326367e-02	ci right 2.767576e-02	k: 508	n:20000
KS ci ratio: 1.742889e-02	ci left: 7.103486e-01	ci right 7.228884e-01	k: 14333	n:20000
NEK9   20000 perm   4 sec   (5480 perm/sec)   p_kst 7.166500e-01   p_cons 2.540000e-02   p_joint 3.199000e-01

Joint ci ratio: 4.427443e-02	ci left: 2.025594e-01	ci right 2.117640e-01	k: 6214	n:30000
Cons ci ratio: 1.398132e-01	ci left: 2.374559e-02	ci right 2.734709e-02	k: 765	n:30000
KS ci ratio: 1.426402e-02	ci left: 7.105583e-01	ci right 7.207999e-01	k: 21471	n:30000
NEK9   30000 perm   6 sec   (5169 perm/sec)   p_kst 7.157000e-01   p_cons 2.550000e-02   p_joint 2.071333e-01

Joint ci ratio: 4.080038e-02	ci left: 1.836605e-01	ci right 1.913349e-01	k: 7499	n:40000
Cons ci ratio: 1.195496e-01	ci left: 2.460810e-02	ci right 2.776119e-02	k: 1046	n:40000
KS ci ratio: 1.233029e-02	ci left: 7.120049e-01	ci right 7.208636e-01	k: 28658	n:40000
NEK9   40000 perm   8 sec   (4974 perm/sec)   p_kst 7.164500e-01   p_cons 2.615000e-02   p_joint 1.874750e-01

Joint ci ratio: 3.763650e-02	ci left: 1.749140e-01	ci right 1.816434e-01	k: 8913	n:50000
Cons ci ratio: 1.062944e-01	ci left: 2.507074e-02	ci right 2.790460e-02	k: 1323	n:50000
KS ci ratio: 1.105979e-02	ci left: 7.113221e-01	ci right 7.192529e-01	k: 35765	n:50000
NEK9   50000 perm   10 sec   (4821 perm/sec)   p_kst 7.153000e-01   p_cons 2.646000e-02   p_joint 1.782600e-01

Joint ci ratio: 3.453581e-02	ci left: 1.737051e-01	ci right 1.798262e-01	k: 10605	n:60000
Cons ci ratio: 9.843592e-02	ci left: 2.448103e-02	ci right 2.703179e-02	k: 1544	n:60000
KS ci ratio: 1.010113e-02	ci left: 7.114697e-01	ci right 7.187095e-01	k: 42906	n:60000
NEK9   60000 perm   13 sec   (4687 perm/sec)   p_kst 7.151000e-01   p_cons 2.573333e-02   p_joint 1.767500e-01

Outputting figure to mutsig2_images.part000000000113/NEK9.4_3028_60000_0.7151_0.025733_0.17675.png
                gene_name: NEK9
               theta_stop: 0.098 
                    nperm: 60000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.026 
      ci_cons_bounds_left: 0.024 
     ci_cons_bounds_right: 0.027 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 39 percent done.
NDRG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.400872e-02	ci left: 8.804271e-01	ci right 8.929466e-01	k: 8868	n:10000
Cons ci ratio: 3.206323e-02	ci left: 5.894169e-01	ci right 6.087254e-01	k: 5991	n:10000
KS ci ratio: 2.123674e-02	ci left: 7.647622e-01	ci right 7.812784e-01	k: 7731	n:10000
NDRG1   10000 perm   1 sec   (6939 perm/sec)   p_kst 7.731000e-01   p_cons 5.991000e-01   p_joint 8.868000e-01

Outputting figure to mutsig2_images.part000000000113/NDRG1.3_1245_10000_0.7731_0.5991_0.8868.png
                gene_name: NDRG1
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 42 percent done.
NDUFA10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.968114e-02	ci left: 3.740545e-01	ci right 3.932134e-01	k: 3836	n:10000
Cons ci ratio: 8.075213e-02	ci left: 1.829427e-01	ci right 1.984379e-01	k: 1906	n:10000
KS ci ratio: 2.851016e-02	ci left: 6.445828e-01	ci right 6.633275e-01	k: 6540	n:10000
NDUFA10   10000 perm   1 sec   (6981 perm/sec)   p_kst 6.540000e-01   p_cons 1.906000e-01   p_joint 3.836000e-01

Outputting figure to mutsig2_images.part000000000113/NDUFA10.3_1108_10000_0.654_0.1906_0.3836.png
                gene_name: NDUFA10
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 45 percent done.
NECAB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.328709e-02	ci left: 8.908764e-01	ci right 9.028912e-01	k: 8970	n:10000
Cons ci ratio: 2.055786e-02	ci left: 7.761063e-01	ci right 7.923278e-01	k: 7843	n:10000
KS ci ratio: 2.414167e-02	ci left: 7.161338e-01	ci right 7.337350e-01	k: 7250	n:10000
NECAB2   10000 perm   1 sec   (7639 perm/sec)   p_kst 7.250000e-01   p_cons 7.843000e-01   p_joint 8.970000e-01

Outputting figure to mutsig2_images.part000000000113/NECAB2.3_1213_10000_0.725_0.7843_0.897.png
                gene_name: NECAB2
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 47 percent done.
NEFH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.395245e-02	ci left: 2.642855e-01	ci right 2.818469e-01	k: 2730	n:10000
Cons ci ratio: 2.937825e-02	ci left: 6.308041e-01	ci right 6.497141e-01	k: 6403	n:10000
KS ci ratio: 1.114414e-01	ci left: 1.039317e-01	ci right 1.162965e-01	k: 1100	n:10000
NEFH   10000 perm   2 sec   (6226 perm/sec)   p_kst 1.100000e-01   p_cons 6.403000e-01   p_joint 2.730000e-01

Joint ci ratio: 4.265528e-02	ci left: 2.905231e-01	ci right 3.032360e-01	k: 5937	n:20000
Cons ci ratio: 2.070914e-02	ci left: 6.350596e-01	ci right 6.483992e-01	k: 12835	n:20000
KS ci ratio: 7.734954e-02	ci left: 1.093810e-01	ci right 1.182316e-01	k: 2275	n:20000
NEFH   20000 perm   4 sec   (5564 perm/sec)   p_kst 1.137500e-01   p_cons 6.417500e-01   p_joint 2.968500e-01

Outputting figure to mutsig2_images.part000000000113/NEFH.3_3079_20000_0.11375_0.64175_0.29685.png
                gene_name: NEFH
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 50 percent done.
NEIL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.517575e-02	ci left: 8.629443e-01	ci right 8.762395e-01	k: 8697	n:10000
KS ci ratio: 1.945981e-02	ci left: 7.943566e-01	ci right 8.100670e-01	k: 8023	n:10000
NEIL3   10000 perm   2 sec   (6513 perm/sec)   p_kst 8.023000e-01   p_cons 8.697000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000113/NEIL3.3_1858_10000_0.8023_0.8697_1.png
                gene_name: NEIL3
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 53 percent done.
NEK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.108585e-02	ci left: 3.610234e-01	ci right 3.800520e-01	k: 3705	n:10000
Cons ci ratio: 1.056010e-01	ci left: 1.146691e-01	ci right 1.275526e-01	k: 1210	n:10000
KS ci ratio: 1.575937e-02	ci left: 8.539624e-01	ci right 8.676267e-01	k: 8609	n:10000
NEK1   10000 perm   2 sec   (5786 perm/sec)   p_kst 8.609000e-01   p_cons 1.210000e-01   p_joint 3.705000e-01

Joint ci ratio: 2.387290e-02	ci left: 5.672116e-01	ci right 5.809668e-01	k: 11482	n:20000
Cons ci ratio: 7.370628e-02	ci left: 1.193146e-01	ci right 1.284950e-01	k: 2477	n:20000
KS ci ratio: 1.103318e-02	ci left: 8.584105e-01	ci right 8.679837e-01	k: 17265	n:20000
NEK1   20000 perm   4 sec   (5266 perm/sec)   p_kst 8.632500e-01   p_cons 1.238500e-01   p_joint 5.741000e-01

Outputting figure to mutsig2_images.part000000000113/NEK1.3_3909_20000_0.86325_0.12385_0.5741.png
                gene_name: NEK1
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.58 

Current progress: 55 percent done.
NEK10
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.659946e-02	ci left: 5.243644e-01	ci right 5.440157e-01	k: 5342	n:10000
Cons ci ratio: 3.023834e-02	ci left: 6.173352e-01	ci right 6.363908e-01	k: 6269	n:10000
KS ci ratio: 7.275060e-02	ci left: 2.167479e-01	ci right 2.332127e-01	k: 2249	n:10000
NEK10   10000 perm   1 sec   (7097 perm/sec)   p_kst 2.249000e-01   p_cons 6.269000e-01   p_joint 5.342000e-01

Outputting figure to mutsig2_images.part000000000113/NEK10.2_2231_10000_0.2249_0.6269_0.5342.png
                gene_name: NEK10
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 58 percent done.
NDRG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.109811e-02	ci left: 2.826046e-01	ci right 3.005169e-01	k: 2915	n:10000
Cons ci ratio: 5.918727e-02	ci left: 2.957857e-01	ci right 3.139281e-01	k: 3048	n:10000
KS ci ratio: 4.107303e-02	ci left: 4.667689e-01	ci right 4.864447e-01	k: 4766	n:10000
NDRG3   10000 perm   1 sec   (7392 perm/sec)   p_kst 4.766000e-01   p_cons 3.048000e-01   p_joint 2.915000e-01

Outputting figure to mutsig2_images.part000000000113/NDRG3.2_1188_10000_0.4766_0.3048_0.2915.png
                gene_name: NDRG3
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 61 percent done.
NDST2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.182965e-02	ci left: 4.576816e-01	ci right 4.773374e-01	k: 4675	n:10000
Cons ci ratio: 1.180587e-02	ci left: 9.113176e-01	ci right 9.222382e-01	k: 9169	n:10000
KS ci ratio: 9.159391e-02	ci left: 1.476637e-01	ci right 1.619380e-01	k: 1547	n:10000
NDST2   10000 perm   2 sec   (6388 perm/sec)   p_kst 1.547000e-01   p_cons 9.169000e-01   p_joint 4.675000e-01

Outputting figure to mutsig2_images.part000000000113/NDST2.2_2704_10000_0.1547_0.9169_0.4675.png
                gene_name: NDST2
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 63 percent done.
NDUFA13
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 66 percent done.
NDUFAF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.492827e-01	ci left: 5.966639e-02	ci right 6.938918e-02	k: 644	n:10000
KS ci ratio: 8.508072e-02	ci left: 1.675982e-01	ci right 1.825915e-01	k: 1750	n:10000
NDUFAF1   10000 perm   1 sec   (7820 perm/sec)   p_kst 1.750000e-01   p_cons 6.440000e-02   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 1.059567e-01	ci left: 6.064653e-02	ci right 6.748089e-02	k: 1280	n:20000
KS ci ratio: 6.111632e-02	ci left: 1.653606e-01	ci right 1.758354e-01	k: 3411	n:20000
NDUFAF1   20000 perm   3 sec   (6834 perm/sec)   p_kst 1.705500e-01   p_cons 6.400000e-02   p_joint 1

Joint ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
Cons ci ratio: 8.772748e-02	ci left: 5.965607e-02	ci right 6.516238e-02	k: 1871	n:30000
KS ci ratio: 4.990739e-02	ci left: 1.662928e-01	ci right 1.748377e-01	k: 5116	n:30000
NDUFAF1   30000 perm   5 sec   (6481 perm/sec)   p_kst 1.705333e-01   p_cons 6.236667e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000113/NDUFAF1.2_1000_30000_0.17053_0.062367_1.png
                gene_name: NDUFAF1
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.062 
      ci_cons_bounds_left: 0.060 
     ci_cons_bounds_right: 0.065 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
NDUFB5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.292156e-02	ci left: 2.707198e-01	ci right 2.884088e-01	k: 2795	n:10000
Cons ci ratio: 3.644533e-02	ci left: 5.264667e-01	ci right 5.461122e-01	k: 5363	n:10000
KS ci ratio: 1.187199e-01	ci left: 9.243507e-02	ci right 1.042001e-01	k: 982	n:10000
NDUFB5   10000 perm   1 sec   (7848 perm/sec)   p_kst 9.820000e-02   p_cons 5.363000e-01   p_joint 2.795000e-01

Joint ci ratio: 6.466887e-02	ci left: 1.501578e-01	ci right 1.602427e-01	k: 3103	n:20000
Cons ci ratio: 2.569487e-02	ci left: 5.308602e-01	ci right 5.447288e-01	k: 10756	n:20000
KS ci ratio: 8.303886e-02	ci left: 9.607192e-02	ci right 1.044447e-01	k: 2004	n:20000
NDUFB5   20000 perm   3 sec   (6899 perm/sec)   p_kst 1.002000e-01   p_cons 5.378000e-01   p_joint 1.551500e-01

Outputting figure to mutsig2_images.part000000000113/NDUFB5.2_594_20000_0.1002_0.5378_0.15515.png
                gene_name: NDUFB5
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.096 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 71 percent done.
NDUFB7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.965508e-03	ci left: 9.816675e-01	ci right 9.866446e-01	k: 9843	n:10000
Cons ci ratio: 2.763342e-02	ci left: 6.586720e-01	ci right 6.772301e-01	k: 6680	n:10000
KS ci ratio: 1.177489e-02	ci left: 9.117293e-01	ci right 9.226262e-01	k: 9173	n:10000
NDUFB7   10000 perm   1 sec   (7910 perm/sec)   p_kst 9.173000e-01   p_cons 6.680000e-01   p_joint 9.843000e-01

Outputting figure to mutsig2_images.part000000000113/NDUFB7.2_426_10000_0.9173_0.668_0.9843.png
                gene_name: NDUFB7
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 74 percent done.
NDUFB8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.377486e-02	ci left: 3.375666e-01	ci right 3.563226e-01	k: 3469	n:10000
KS ci ratio: 1.768563e-02	ci left: 8.234072e-01	ci right 8.381996e-01	k: 8309	n:10000
NDUFB8   10000 perm   1 sec   (7580 perm/sec)   p_kst 8.309000e-01   p_cons 3.469000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000113/NDUFB8.2_581_10000_0.8309_0.3469_1.png
                gene_name: NDUFB8
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
NDUFV1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.775808e-02	ci left: 6.566587e-01	ci right 6.752445e-01	k: 6660	n:10000
Cons ci ratio: 1.536921e-02	ci left: 8.599833e-01	ci right 8.734023e-01	k: 8668	n:10000
KS ci ratio: 5.522995e-02	ci left: 3.256490e-01	ci right 3.442472e-01	k: 3349	n:10000
NDUFV1   10000 perm   1 sec   (7584 perm/sec)   p_kst 3.349000e-01   p_cons 8.668000e-01   p_joint 6.660000e-01

Outputting figure to mutsig2_images.part000000000113/NDUFV1.2_1435_10000_0.3349_0.8668_0.666.png
                gene_name: NDUFV1
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 79 percent done.
NDUFV2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.543835e-02	ci left: 2.045169e-01	ci right 2.206509e-01	k: 2125	n:10000
KS ci ratio: 3.414745e-02	ci left: 5.587238e-01	ci right 5.782363e-01	k: 5685	n:10000
NDUFV2   10000 perm   1 sec   (8041 perm/sec)   p_kst 5.685000e-01   p_cons 2.125000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000113/NDUFV2.2_782_10000_0.5685_0.2125_1.png
                gene_name: NDUFV2
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
NECAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.430771e-02	ci left: 2.095461e-01	ci right 2.258187e-01	k: 2176	n:10000
KS ci ratio: 6.061366e-02	ci left: 2.858743e-01	ci right 3.038454e-01	k: 2948	n:10000
NECAP1   10000 perm   1 sec   (7639 perm/sec)   p_kst 2.948000e-01   p_cons 2.176000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000113/NECAP1.2_860_10000_0.2948_0.2176_1.png
                gene_name: NECAP1
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
NEDD9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.610238e-02	ci left: 5.311724e-01	ci right 5.508037e-01	k: 5410	n:10000
Cons ci ratio: 2.583828e-02	ci left: 6.879873e-01	ci right 7.060978e-01	k: 6971	n:10000
KS ci ratio: 6.012179e-02	ci left: 2.892436e-01	ci right 3.072740e-01	k: 2982	n:10000
NEDD9   10000 perm   2 sec   (6524 perm/sec)   p_kst 2.982000e-01   p_cons 6.971000e-01   p_joint 5.410000e-01

Outputting figure to mutsig2_images.part000000000113/NEDD9.2_2619_10000_0.2982_0.6971_0.541.png
                gene_name: NEDD9
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 87 percent done.
NEGR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.382843e-02	ci left: 5.633354e-01	ci right 5.828220e-01	k: 5731	n:10000
KS ci ratio: 1.760380e-02	ci left: 8.247294e-01	ci right 8.394766e-01	k: 8322	n:10000
NEGR1   10000 perm   1 sec   (7511 perm/sec)   p_kst 8.322000e-01   p_cons 5.731000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000113/NEGR1.2_1093_10000_0.8322_0.5731_1.png
                gene_name: NEGR1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
NEIL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.169932e-03	ci left: 9.918346e-01	ci right 9.950678e-01	k: 9936	n:10000
Cons ci ratio: 2.659928e-02	ci left: 6.754905e-01	ci right 6.938018e-01	k: 6847	n:10000
KS ci ratio: 2.574045e-02	ci left: 6.896003e-01	ci right 7.076838e-01	k: 6987	n:10000
NEIL1   10000 perm   1 sec   (7792 perm/sec)   p_kst 6.987000e-01   p_cons 6.847000e-01   p_joint 9.936000e-01

Outputting figure to mutsig2_images.part000000000113/NEIL1.2_1209_10000_0.6987_0.6847_0.9936.png
                gene_name: NEIL1
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 1.00 

Current progress: 92 percent done.
NEK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.701526e-02	ci left: 4.003376e-01	ci right 4.197148e-01	k: 4100	n:10000
Cons ci ratio: 4.569037e-02	ci left: 4.141877e-01	ci right 4.336567e-01	k: 4239	n:10000
KS ci ratio: 5.308208e-02	ci left: 3.434285e-01	ci right 3.622573e-01	k: 3528	n:10000
NEK4   10000 perm   1 sec   (6891 perm/sec)   p_kst 3.528000e-01   p_cons 4.239000e-01   p_joint 4.100000e-01

Outputting figure to mutsig2_images.part000000000113/NEK4.2_2590_10000_0.3528_0.4239_0.41.png
                gene_name: NEK4
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 95 percent done.
NELF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.990030e-02	ci left: 7.870536e-01	ci right 8.029742e-01	k: 7951	n:10000
Cons ci ratio: 2.347064e-02	ci left: 7.273436e-01	ci right 7.447187e-01	k: 7361	n:10000
KS ci ratio: 3.841808e-02	ci left: 5.001504e-01	ci right 5.198437e-01	k: 5100	n:10000
NELF   10000 perm   1 sec   (7340 perm/sec)   p_kst 5.100000e-01   p_cons 7.361000e-01   p_joint 7.951000e-01

Outputting figure to mutsig2_images.part000000000113/NELF.2_1667_10000_0.51_0.7361_0.7951.png
                gene_name: NELF
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 97 percent done.
NET1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.044849e-02	ci left: 7.779303e-01	ci right 7.941028e-01	k: 7861	n:10000
KS ci ratio: 3.142636e-02	ci left: 5.990540e-01	ci right 6.182826e-01	k: 6087	n:10000
NET1   10000 perm   1 sec   (7203 perm/sec)   p_kst 6.087000e-01   p_cons 7.861000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000113/NET1.2_1936_10000_0.6087_0.7861_1.png
                gene_name: NET1
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000113
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 113 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1727>
Subject: Job 8004306: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1727>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000114> was used as the working directory.
Started at Sun Nov 11 15:09:11 2012
Results reported at Sun Nov 11 20:29:54 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000114.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000114.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 114  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000114.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  19392.18 sec.
    Max Memory :      4758 MB
    Max Swap   :      7171 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
114
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 114
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 114: processing genes 10224 - 10314
Calculating significance of each gene.
Using projection method.
10224	NETO2	3.361510e-01
10225	NEU1	5.819144e-01
10226	NEU2	1
10227	NEU3	1
10228	NEU4	4.226772e-01
10229	NEURL	1
10230	NEURL2	3.159474e-01
10231	NEURL4	6.444267e-01
10232	NEUROD1	1
10233	NEUROD2	6.286405e-01
10234	NEUROD4	2.535768e-02
10235	NEUROD6	9.815456e-03
10236	NEUROG1	2.663426e-01
10237	NEUROG2	1.314852e-01
10238	NEUROG3	4.854870e-02
10239	NEXN	7.690429e-01
10240	NF1	2.076047e-01
10241	NF2	6.702674e-01
10242	NFAM1	1
10243	NFASC	7.284043e-01
10244	NFAT5	9.043874e-01
10245	NFATC1	1
10246	NFATC2	9.313238e-01
10247	NFATC2IP	3.665070e-02
10248	NFATC3	4.067214e-01
10249	NFATC4	9.342734e-01
10250	NFE2	7.217519e-01
10251	NFE2L1	1
10252	NFE2L2	5.884182e-15
10253	NFE2L3	1.029283e-01
10254	NFIA	2.377620e-01
10255	NFIB	6.130458e-01
10256	NFIC	5.954532e-01
10257	NFIL3	3.375088e-01
10258	NFIX	1
10259	NFKB1	8.868458e-01
10260	NFKB2	7.619160e-01
10261	NFKBIA	1
10262	NFKBIB	5.557613e-01
10263	NFKBID	1
10264	NFKBIE	5.908732e-01
10265	NFKBIL1	3.481386e-01
10266	NFKBIL2	1
10267	NFKBIZ	7.469245e-01
10268	NFRKB	9.497547e-01
10269	NFS1	5.715119e-01
10270	NFU1	6.648486e-01
10271	NFX1	9.477383e-01
10272	NFXL1	5.420928e-01
10273	NFYA	7.295404e-01
10274	NFYB	3.891204e-01
10275	NFYC	1
10276	NGB	7.253227e-02
10277	NGDN	6.715427e-01
10278	NGEF	8.983854e-01
10279	NGF	3.562177e-01
10280	NGFR	8.427823e-01
10281	NGFRAP1	1.201042e-01
10282	NGLY1	4.943102e-01
10283	NGRN	1
10284	NHEDC1	5.135809e-01
10285	NHEDC2	5.361323e-01
10286	NHEJ1	1
10287	NHLH1	1
10288	NHLH2	1
10289	NHLRC1	6.435568e-01
10290	NHLRC2	1
10291	NHLRC3	7.164509e-01
10292	NHLRC4	1
10293	NHP2	1
10294	NHP2L1	1
10295	NHS	9.629756e-01
10296	NHSL2	9.047304e-01
10297	NICN1	1
10298	NID1	1
10299	NID2	9.926597e-01
10300	NIF3L1	2.160241e-01
10301	NIN	5.564251e-01
10302	NINJ1	1
10303	NINJ2	1
10304	NINL	3.145674e-01
10305	NIP7	1
10306	NIPA1	5.942015e-01
10307	NIPA2	5.678095e-01
10308	NIPAL1	1
10309	NIPAL2	2.106953e-01
10310	NIPAL3	1
10311	NIPAL4	5.887376e-02
10312	NIPBL	9.999421e-01
10313	NIPSNAP1	2.338489e-01
10314	NIPSNAP3A	3.391074e-01
Done

Running MutSig 2:
Scatter job 114: processing genes 10224 - 10314
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
NFE2L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
KS ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
NFE2L2   10000 perm   2 sec   (5136 perm/sec)   p_kst 1.000000e-04   p_cons 1.000000e-04   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 2.771651e+00	ci left: 1.265890e-06	ci right 2.785503e-04	k: 1	n:20000
KS ci ratio: 2.771651e+00	ci left: 1.265890e-06	ci right 2.785503e-04	k: 1	n:20000
NFE2L2   20000 perm   6 sec   (3463 perm/sec)   p_kst 5.000000e-05   p_cons 5.000000e-05   p_joint 0

Joint ci ratio: 3.919869e+00	ci left: 0	ci right 1.229551e-04	k: 0	n:30000
Cons ci ratio: 2.771720e+00	ci left: 8.439266e-07	ci right 1.857073e-04	k: 1	n:30000
KS ci ratio: 2.771720e+00	ci left: 8.439266e-07	ci right 1.857073e-04	k: 1	n:30000
NFE2L2   30000 perm   8 sec   (3730 perm/sec)   p_kst 3.333333e-05   p_cons 3.333333e-05   p_joint 0

Joint ci ratio: 3.919902e+00	ci left: 0	ci right 9.221773e-05	k: 0	n:40000
Cons ci ratio: 2.771755e+00	ci left: 6.329450e-07	ci right 1.392831e-04	k: 1	n:40000
KS ci ratio: 2.771755e+00	ci left: 6.329450e-07	ci right 1.392831e-04	k: 1	n:40000
NFE2L2   40000 perm   10 sec   (3878 perm/sec)   p_kst 2.500000e-05   p_cons 2.500000e-05   p_joint 0

Joint ci ratio: 3.919922e+00	ci left: 0	ci right 7.377487e-05	k: 0	n:50000
Cons ci ratio: 2.771775e+00	ci left: 5.063560e-07	ci right 1.114278e-04	k: 1	n:50000
KS ci ratio: 2.771775e+00	ci left: 5.063560e-07	ci right 1.114278e-04	k: 1	n:50000
NFE2L2   50000 perm   13 sec   (3932 perm/sec)   p_kst 2.000000e-05   p_cons 2.000000e-05   p_joint 0

Joint ci ratio: 3.919935e+00	ci left: 0	ci right 6.147943e-05	k: 0	n:60000
Cons ci ratio: 2.771789e+00	ci left: 4.219634e-07	ci right 9.285719e-05	k: 1	n:60000
KS ci ratio: 2.771789e+00	ci left: 4.219634e-07	ci right 9.285719e-05	k: 1	n:60000
NFE2L2   60000 perm   15 sec   (3966 perm/sec)   p_kst 1.666667e-05   p_cons 1.666667e-05   p_joint 0

Joint ci ratio: 3.919944e+00	ci left: 0	ci right 5.269689e-05	k: 0	n:70000
Cons ci ratio: 2.771799e+00	ci left: 3.616829e-07	ci right 7.959231e-05	k: 1	n:70000
KS ci ratio: 2.771799e+00	ci left: 3.616829e-07	ci right 7.959231e-05	k: 1	n:70000
NFE2L2   70000 perm   18 sec   (3973 perm/sec)   p_kst 1.428571e-05   p_cons 1.428571e-05   p_joint 0

Joint ci ratio: 3.919951e+00	ci left: 0	ci right 4.610993e-05	k: 0	n:80000
Cons ci ratio: 2.771807e+00	ci left: 3.164725e-07	ci right 6.964355e-05	k: 1	n:80000
KS ci ratio: 2.771807e+00	ci left: 3.164725e-07	ci right 6.964355e-05	k: 1	n:80000
NFE2L2   80000 perm   20 sec   (3967 perm/sec)   p_kst 1.250000e-05   p_cons 1.250000e-05   p_joint 0

Joint ci ratio: 3.919956e+00	ci left: 0	ci right 4.098671e-05	k: 0	n:90000
Cons ci ratio: 2.771812e+00	ci left: 2.813089e-07	ci right 6.190558e-05	k: 1	n:90000
KS ci ratio: 2.771812e+00	ci left: 2.813089e-07	ci right 6.190558e-05	k: 1	n:90000
NFE2L2   90000 perm   23 sec   (3929 perm/sec)   p_kst 1.111111e-05   p_cons 1.111111e-05   p_joint 0

Joint ci ratio: 3.919961e+00	ci left: 0	ci right 3.688811e-05	k: 0	n:100000
Cons ci ratio: 2.771817e+00	ci left: 2.531780e-07	ci right 5.571516e-05	k: 1	n:100000
KS ci ratio: 2.771817e+00	ci left: 2.531780e-07	ci right 5.571516e-05	k: 1	n:100000
NFE2L2   100000 perm   26 sec   (3906 perm/sec)   p_kst 1.000000e-05   p_cons 1.000000e-05   p_joint 0

Joint ci ratio: 3.919964e+00	ci left: 0	ci right 3.353471e-05	k: 0	n:110000
Cons ci ratio: 2.771821e+00	ci left: 2.301619e-07	ci right 5.065025e-05	k: 1	n:110000
KS ci ratio: 2.771821e+00	ci left: 2.301619e-07	ci right 5.065025e-05	k: 1	n:110000
NFE2L2   110000 perm   28 sec   (3877 perm/sec)   p_kst 9.090909e-06   p_cons 9.090909e-06   p_joint 0

Joint ci ratio: 3.919967e+00	ci left: 0	ci right 3.074019e-05	k: 0	n:120000
Cons ci ratio: 2.771824e+00	ci left: 2.109817e-07	ci right 4.642948e-05	k: 1	n:120000
KS ci ratio: 2.771824e+00	ci left: 2.109817e-07	ci right 4.642948e-05	k: 1	n:120000
NFE2L2   120000 perm   31 sec   (3843 perm/sec)   p_kst 8.333333e-06   p_cons 8.333333e-06   p_joint 0

Joint ci ratio: 3.919970e+00	ci left: 0	ci right 2.837559e-05	k: 0	n:130000
Cons ci ratio: 2.771827e+00	ci left: 1.947524e-07	ci right 4.285804e-05	k: 1	n:130000
KS ci ratio: 2.771827e+00	ci left: 1.947524e-07	ci right 4.285804e-05	k: 1	n:130000
NFE2L2   130000 perm   34 sec   (3812 perm/sec)   p_kst 7.692308e-06   p_cons 7.692308e-06   p_joint 0

Joint ci ratio: 3.919972e+00	ci left: 0	ci right 2.634879e-05	k: 0	n:140000
Cons ci ratio: 2.771829e+00	ci left: 1.808415e-07	ci right 3.979680e-05	k: 1	n:140000
KS ci ratio: 2.771829e+00	ci left: 1.808415e-07	ci right 3.979680e-05	k: 1	n:140000
NFE2L2   140000 perm   37 sec   (3776 perm/sec)   p_kst 7.142857e-06   p_cons 7.142857e-06   p_joint 0

Joint ci ratio: 3.919974e+00	ci left: 0	ci right 2.459223e-05	k: 0	n:150000
Cons ci ratio: 2.771831e+00	ci left: 1.687854e-07	ci right 3.714372e-05	k: 1	n:150000
KS ci ratio: 2.771831e+00	ci left: 1.687854e-07	ci right 3.714372e-05	k: 1	n:150000
NFE2L2   150000 perm   40 sec   (3740 perm/sec)   p_kst 6.666667e-06   p_cons 6.666667e-06   p_joint 0

Joint ci ratio: 3.919976e+00	ci left: 0	ci right 2.305523e-05	k: 0	n:160000
Cons ci ratio: 2.771833e+00	ci left: 1.582363e-07	ci right 3.482227e-05	k: 1	n:160000
KS ci ratio: 2.771833e+00	ci left: 1.582363e-07	ci right 3.482227e-05	k: 1	n:160000
NFE2L2   160000 perm   43 sec   (3702 perm/sec)   p_kst 6.250000e-06   p_cons 6.250000e-06   p_joint 0

Joint ci ratio: 3.919977e+00	ci left: 0	ci right 2.169906e-05	k: 0	n:170000
Cons ci ratio: 2.771834e+00	ci left: 1.489283e-07	ci right 3.277393e-05	k: 1	n:170000
KS ci ratio: 2.771834e+00	ci left: 1.489283e-07	ci right 3.277393e-05	k: 1	n:170000
NFE2L2   170000 perm   46 sec   (3663 perm/sec)   p_kst 5.882353e-06   p_cons 5.882353e-06   p_joint 0

Joint ci ratio: 3.919978e+00	ci left: 0	ci right 2.049356e-05	k: 0	n:180000
Cons ci ratio: 2.771835e+00	ci left: 1.406545e-07	ci right 3.095318e-05	k: 1	n:180000
KS ci ratio: 2.771835e+00	ci left: 1.406545e-07	ci right 3.095318e-05	k: 1	n:180000
NFE2L2   180000 perm   50 sec   (3623 perm/sec)   p_kst 5.555556e-06   p_cons 5.555556e-06   p_joint 0

Joint ci ratio: 3.919979e+00	ci left: 0	ci right 1.941497e-05	k: 0	n:190000
Cons ci ratio: 2.771837e+00	ci left: 1.332516e-07	ci right 2.932409e-05	k: 1	n:190000
KS ci ratio: 2.771837e+00	ci left: 1.332516e-07	ci right 2.932409e-05	k: 1	n:190000
NFE2L2   190000 perm   53 sec   (3586 perm/sec)   p_kst 5.263158e-06   p_cons 5.263158e-06   p_joint 0

Joint ci ratio: 3.919980e+00	ci left: 0	ci right 1.844423e-05	k: 0	n:200000
Cons ci ratio: 2.771838e+00	ci left: 1.265890e-07	ci right 2.785790e-05	k: 1	n:200000
KS ci ratio: 2.771838e+00	ci left: 1.265890e-07	ci right 2.785790e-05	k: 1	n:200000
NFE2L2   200000 perm   56 sec   (3550 perm/sec)   p_kst 5.000000e-06   p_cons 5.000000e-06   p_joint 0

Joint ci ratio: 3.919981e+00	ci left: 0	ci right 1.756594e-05	k: 0	n:210000
Cons ci ratio: 2.771839e+00	ci left: 1.205610e-07	ci right 2.653135e-05	k: 1	n:210000
KS ci ratio: 2.771839e+00	ci left: 1.205610e-07	ci right 2.653135e-05	k: 1	n:210000
NFE2L2   210000 perm   60 sec   (3513 perm/sec)   p_kst 4.761905e-06   p_cons 4.761905e-06   p_joint 0

Joint ci ratio: 3.919982e+00	ci left: 0	ci right 1.676749e-05	k: 0	n:220000
Cons ci ratio: 2.771840e+00	ci left: 1.150809e-07	ci right 2.532539e-05	k: 1	n:220000
KS ci ratio: 2.771840e+00	ci left: 1.150809e-07	ci right 2.532539e-05	k: 1	n:220000
NFE2L2   220000 perm   64 sec   (3458 perm/sec)   p_kst 4.545455e-06   p_cons 4.545455e-06   p_joint 0

Joint ci ratio: 3.919983e+00	ci left: 0	ci right 1.603848e-05	k: 0	n:230000
Cons ci ratio: 2.771841e+00	ci left: 1.100774e-07	ci right 2.422430e-05	k: 1	n:230000
KS ci ratio: 2.771841e+00	ci left: 1.100774e-07	ci right 2.422430e-05	k: 1	n:230000
NFE2L2   230000 perm   67 sec   (3422 perm/sec)   p_kst 4.347826e-06   p_cons 4.347826e-06   p_joint 0

Joint ci ratio: 3.919984e+00	ci left: 0	ci right 1.537021e-05	k: 0	n:240000
Cons ci ratio: 2.771841e+00	ci left: 1.054909e-07	ci right 2.321496e-05	k: 1	n:240000
KS ci ratio: 2.771841e+00	ci left: 1.054909e-07	ci right 2.321496e-05	k: 1	n:240000
NFE2L2   240000 perm   71 sec   (3380 perm/sec)   p_kst 4.166667e-06   p_cons 4.166667e-06   p_joint 0

Joint ci ratio: 3.919984e+00	ci left: 0	ci right 1.475541e-05	k: 0	n:250000
Cons ci ratio: 2.771842e+00	ci left: 1.012712e-07	ci right 2.228637e-05	k: 1	n:250000
KS ci ratio: 2.771842e+00	ci left: 1.012712e-07	ci right 2.228637e-05	k: 1	n:250000
NFE2L2   250000 perm   75 sec   (3346 perm/sec)   p_kst 4.000000e-06   p_cons 4.000000e-06   p_joint 0

Joint ci ratio: 3.919985e+00	ci left: 0	ci right 1.418790e-05	k: 0	n:260000
Cons ci ratio: 2.771843e+00	ci left: 9.737618e-08	ci right 2.142921e-05	k: 1	n:260000
KS ci ratio: 2.771843e+00	ci left: 9.737618e-08	ci right 2.142921e-05	k: 1	n:260000
NFE2L2   260000 perm   79 sec   (3304 perm/sec)   p_kst 3.846154e-06   p_cons 3.846154e-06   p_joint 0

Joint ci ratio: 3.919985e+00	ci left: 0	ci right 1.366242e-05	k: 0	n:270000
Cons ci ratio: 2.771843e+00	ci left: 9.376965e-08	ci right 2.063554e-05	k: 1	n:270000
KS ci ratio: 2.771843e+00	ci left: 9.376965e-08	ci right 2.063554e-05	k: 1	n:270000
NFE2L2   270000 perm   83 sec   (3269 perm/sec)   p_kst 3.703704e-06   p_cons 3.703704e-06   p_joint 0

Joint ci ratio: 3.919986e+00	ci left: 0	ci right 1.317448e-05	k: 0	n:280000
Cons ci ratio: 2.771844e+00	ci left: 9.042074e-08	ci right 1.989856e-05	k: 1	n:280000
KS ci ratio: 2.771844e+00	ci left: 9.042074e-08	ci right 1.989856e-05	k: 1	n:280000
NFE2L2   280000 perm   87 sec   (3236 perm/sec)   p_kst 3.571429e-06   p_cons 3.571429e-06   p_joint 0

Joint ci ratio: 3.919986e+00	ci left: 0	ci right 1.272019e-05	k: 0	n:290000
Cons ci ratio: 2.771844e+00	ci left: 8.730278e-08	ci right 1.921241e-05	k: 1	n:290000
KS ci ratio: 2.771844e+00	ci left: 8.730278e-08	ci right 1.921241e-05	k: 1	n:290000
NFE2L2   290000 perm   91 sec   (3201 perm/sec)   p_kst 3.448276e-06   p_cons 3.448276e-06   p_joint 0

Joint ci ratio: 3.919987e+00	ci left: 0	ci right 1.229619e-05	k: 0	n:300000
Cons ci ratio: 2.771845e+00	ci left: 8.439269e-08	ci right 1.857200e-05	k: 1	n:300000
KS ci ratio: 2.771845e+00	ci left: 8.439269e-08	ci right 1.857200e-05	k: 1	n:300000
NFE2L2   300000 perm   95 sec   (3170 perm/sec)   p_kst 3.333333e-06   p_cons 3.333333e-06   p_joint 0

Joint ci ratio: 3.919987e+00	ci left: 0	ci right 1.189954e-05	k: 0	n:310000
Cons ci ratio: 2.771845e+00	ci left: 8.167035e-08	ci right 1.797291e-05	k: 1	n:310000
KS ci ratio: 2.771845e+00	ci left: 8.167035e-08	ci right 1.797291e-05	k: 1	n:310000
NFE2L2   310000 perm   99 sec   (3138 perm/sec)   p_kst 3.225806e-06   p_cons 3.225806e-06   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.152768e-05	k: 0	n:320000
Cons ci ratio: 2.771846e+00	ci left: 7.911815e-08	ci right 1.741126e-05	k: 1	n:320000
KS ci ratio: 2.771846e+00	ci left: 7.911815e-08	ci right 1.741126e-05	k: 1	n:320000
NFE2L2   320000 perm   103 sec   (3103 perm/sec)   p_kst 3.125000e-06   p_cons 3.125000e-06   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.117836e-05	k: 0	n:330000
Cons ci ratio: 2.771846e+00	ci left: 7.672063e-08	ci right 1.688365e-05	k: 1	n:330000
KS ci ratio: 2.771846e+00	ci left: 7.672063e-08	ci right 1.688365e-05	k: 1	n:330000
NFE2L2   330000 perm   108 sec   (3069 perm/sec)   p_kst 3.030303e-06   p_cons 3.030303e-06   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.084959e-05	k: 0	n:340000
Cons ci ratio: 2.771846e+00	ci left: 7.446414e-08	ci right 1.638708e-05	k: 1	n:340000
KS ci ratio: 2.771846e+00	ci left: 7.446414e-08	ci right 1.638708e-05	k: 1	n:340000
NFE2L2   340000 perm   112 sec   (3037 perm/sec)   p_kst 2.941176e-06   p_cons 2.941176e-06   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 1.053960e-05	k: 0	n:350000
Cons ci ratio: 2.771847e+00	ci left: 7.233659e-08	ci right 1.591888e-05	k: 1	n:350000
KS ci ratio: 2.771847e+00	ci left: 7.233659e-08	ci right 1.591888e-05	k: 1	n:350000
NFE2L2   350000 perm   116 sec   (3007 perm/sec)   p_kst 2.857143e-06   p_cons 2.857143e-06   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 1.024683e-05	k: 0	n:360000
Cons ci ratio: 2.771847e+00	ci left: 7.032724e-08	ci right 1.547669e-05	k: 1	n:360000
KS ci ratio: 2.771847e+00	ci left: 7.032724e-08	ci right 1.547669e-05	k: 1	n:360000
NFE2L2   360000 perm   121 sec   (2976 perm/sec)   p_kst 2.777778e-06   p_cons 2.777778e-06   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 9.969895e-06	k: 0	n:370000
Cons ci ratio: 2.771847e+00	ci left: 6.842651e-08	ci right 1.505840e-05	k: 1	n:370000
KS ci ratio: 2.771847e+00	ci left: 6.842651e-08	ci right 1.505840e-05	k: 1	n:370000
NFE2L2   370000 perm   126 sec   (2945 perm/sec)   p_kst 2.702703e-06   p_cons 2.702703e-06   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.707530e-06	k: 0	n:380000
Cons ci ratio: 2.771848e+00	ci left: 6.662581e-08	ci right 1.466213e-05	k: 1	n:380000
KS ci ratio: 2.771848e+00	ci left: 6.662581e-08	ci right 1.466213e-05	k: 1	n:380000
NFE2L2   380000 perm   130 sec   (2915 perm/sec)   p_kst 2.631579e-06   p_cons 2.631579e-06   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.458621e-06	k: 0	n:390000
Cons ci ratio: 2.771848e+00	ci left: 6.491745e-08	ci right 1.428618e-05	k: 1	n:390000
KS ci ratio: 2.771848e+00	ci left: 6.491745e-08	ci right 1.428618e-05	k: 1	n:390000
NFE2L2   390000 perm   135 sec   (2886 perm/sec)   p_kst 2.564103e-06   p_cons 2.564103e-06   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.222156e-06	k: 0	n:400000
Cons ci ratio: 2.771848e+00	ci left: 6.329452e-08	ci right 1.392903e-05	k: 1	n:400000
KS ci ratio: 2.771848e+00	ci left: 6.329452e-08	ci right 1.392903e-05	k: 1	n:400000
NFE2L2   400000 perm   140 sec   (2859 perm/sec)   p_kst 2.500000e-06   p_cons 2.500000e-06   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 8.997226e-06	k: 0	n:410000
Cons ci ratio: 2.771848e+00	ci left: 6.175075e-08	ci right 1.358930e-05	k: 1	n:410000
KS ci ratio: 2.771848e+00	ci left: 6.175075e-08	ci right 1.358930e-05	k: 1	n:410000
NFE2L2   410000 perm   145 sec   (2831 perm/sec)   p_kst 2.439024e-06   p_cons 2.439024e-06   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.783008e-06	k: 0	n:420000
Cons ci ratio: 2.771849e+00	ci left: 6.028049e-08	ci right 1.326575e-05	k: 1	n:420000
KS ci ratio: 2.771849e+00	ci left: 6.028049e-08	ci right 1.326575e-05	k: 1	n:420000
NFE2L2   420000 perm   150 sec   (2806 perm/sec)   p_kst 2.380952e-06   p_cons 2.380952e-06   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.578753e-06	k: 0	n:430000
Cons ci ratio: 2.771849e+00	ci left: 5.887862e-08	ci right 1.295724e-05	k: 1	n:430000
KS ci ratio: 2.771849e+00	ci left: 5.887862e-08	ci right 1.295724e-05	k: 1	n:430000
NFE2L2   430000 perm   155 sec   (2779 perm/sec)   p_kst 2.325581e-06   p_cons 2.325581e-06   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.383782e-06	k: 0	n:440000
Cons ci ratio: 2.771849e+00	ci left: 5.754047e-08	ci right 1.266276e-05	k: 1	n:440000
KS ci ratio: 2.771849e+00	ci left: 5.754047e-08	ci right 1.266276e-05	k: 1	n:440000
NFE2L2   440000 perm   160 sec   (2753 perm/sec)   p_kst 2.272727e-06   p_cons 2.272727e-06   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.197476e-06	k: 0	n:450000
Cons ci ratio: 2.771849e+00	ci left: 5.626179e-08	ci right 1.238137e-05	k: 1	n:450000
KS ci ratio: 2.771849e+00	ci left: 5.626179e-08	ci right 1.238137e-05	k: 1	n:450000
NFE2L2   450000 perm   165 sec   (2727 perm/sec)   p_kst 2.222222e-06   p_cons 2.222222e-06   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.019271e-06	k: 0	n:460000
Cons ci ratio: 2.771850e+00	ci left: 5.503871e-08	ci right 1.211221e-05	k: 1	n:460000
KS ci ratio: 2.771850e+00	ci left: 5.503871e-08	ci right 1.211221e-05	k: 1	n:460000
NFE2L2   460000 perm   170 sec   (2702 perm/sec)   p_kst 2.173913e-06   p_cons 2.173913e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.848649e-06	k: 0	n:470000
Cons ci ratio: 2.771850e+00	ci left: 5.386768e-08	ci right 1.185450e-05	k: 1	n:470000
KS ci ratio: 2.771850e+00	ci left: 5.386768e-08	ci right 1.185450e-05	k: 1	n:470000
NFE2L2   470000 perm   176 sec   (2677 perm/sec)   p_kst 2.127660e-06   p_cons 2.127660e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.685136e-06	k: 0	n:480000
Cons ci ratio: 2.771850e+00	ci left: 5.274543e-08	ci right 1.160754e-05	k: 1	n:480000
KS ci ratio: 2.771850e+00	ci left: 5.274543e-08	ci right 1.160754e-05	k: 1	n:480000
NFE2L2   480000 perm   181 sec   (2653 perm/sec)   p_kst 2.083333e-06   p_cons 2.083333e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.528297e-06	k: 0	n:490000
Cons ci ratio: 2.771850e+00	ci left: 5.166899e-08	ci right 1.137065e-05	k: 1	n:490000
KS ci ratio: 2.771850e+00	ci left: 5.166899e-08	ci right 1.137065e-05	k: 1	n:490000
NFE2L2   490000 perm   186 sec   (2629 perm/sec)   p_kst 2.040816e-06   p_cons 2.040816e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.377732e-06	k: 0	n:500000
Cons ci ratio: 2.771850e+00	ci left: 5.063561e-08	ci right 1.114324e-05	k: 1	n:500000
KS ci ratio: 2.771850e+00	ci left: 5.063561e-08	ci right 1.114324e-05	k: 1	n:500000
NFE2L2   500000 perm   192 sec   (2606 perm/sec)   p_kst 2.000000e-06   p_cons 2.000000e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.233071e-06	k: 0	n:510000
Cons ci ratio: 2.771850e+00	ci left: 4.964276e-08	ci right 1.092474e-05	k: 1	n:510000
KS ci ratio: 2.771850e+00	ci left: 4.964276e-08	ci right 1.092474e-05	k: 1	n:510000
NFE2L2   510000 perm   198 sec   (2582 perm/sec)   p_kst 1.960784e-06   p_cons 1.960784e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.093974e-06	k: 0	n:520000
Cons ci ratio: 2.771851e+00	ci left: 4.868809e-08	ci right 1.071465e-05	k: 1	n:520000
KS ci ratio: 2.771851e+00	ci left: 4.868809e-08	ci right 1.071465e-05	k: 1	n:520000
NFE2L2   520000 perm   203 sec   (2559 perm/sec)   p_kst 1.923077e-06   p_cons 1.923077e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.960126e-06	k: 0	n:530000
Cons ci ratio: 2.771851e+00	ci left: 4.776945e-08	ci right 1.051249e-05	k: 1	n:530000
KS ci ratio: 2.771851e+00	ci left: 4.776945e-08	ci right 1.051249e-05	k: 1	n:530000
NFE2L2   530000 perm   209 sec   (2537 perm/sec)   p_kst 1.886792e-06   p_cons 1.886792e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.831235e-06	k: 0	n:540000
Cons ci ratio: 2.771851e+00	ci left: 4.688483e-08	ci right 1.031781e-05	k: 1	n:540000
KS ci ratio: 2.771851e+00	ci left: 4.688483e-08	ci right 1.031781e-05	k: 1	n:540000
NFE2L2   540000 perm   215 sec   (2516 perm/sec)   p_kst 1.851852e-06   p_cons 1.851852e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.707031e-06	k: 0	n:550000
Cons ci ratio: 2.771851e+00	ci left: 4.603238e-08	ci right 1.013022e-05	k: 1	n:550000
KS ci ratio: 2.771851e+00	ci left: 4.603238e-08	ci right 1.013022e-05	k: 1	n:550000
NFE2L2   550000 perm   220 sec   (2495 perm/sec)   p_kst 1.818182e-06   p_cons 1.818182e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.587263e-06	k: 0	n:560000
Cons ci ratio: 2.771851e+00	ci left: 4.521037e-08	ci right 9.949323e-06	k: 1	n:560000
KS ci ratio: 2.771851e+00	ci left: 4.521037e-08	ci right 9.949323e-06	k: 1	n:560000
NFE2L2   560000 perm   226 sec   (2474 perm/sec)   p_kst 1.785714e-06   p_cons 1.785714e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.471697e-06	k: 0	n:570000
Cons ci ratio: 2.771851e+00	ci left: 4.441721e-08	ci right 9.774774e-06	k: 1	n:570000
KS ci ratio: 2.771851e+00	ci left: 4.441721e-08	ci right 9.774774e-06	k: 1	n:570000
NFE2L2   570000 perm   232 sec   (2454 perm/sec)   p_kst 1.754386e-06   p_cons 1.754386e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.360117e-06	k: 0	n:580000
Cons ci ratio: 2.771851e+00	ci left: 4.365139e-08	ci right 9.606244e-06	k: 1	n:580000
KS ci ratio: 2.771851e+00	ci left: 4.365139e-08	ci right 9.606244e-06	k: 1	n:580000
NFE2L2   580000 perm   238 sec   (2434 perm/sec)   p_kst 1.724138e-06   p_cons 1.724138e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.252319e-06	k: 0	n:590000
Cons ci ratio: 2.771852e+00	ci left: 4.291154e-08	ci right 9.443427e-06	k: 1	n:590000
KS ci ratio: 2.771852e+00	ci left: 4.291154e-08	ci right 9.443427e-06	k: 1	n:590000
NFE2L2   590000 perm   244 sec   (2416 perm/sec)   p_kst 1.694915e-06   p_cons 1.694915e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.148114e-06	k: 0	n:600000
Cons ci ratio: 2.771852e+00	ci left: 4.219635e-08	ci right 9.286037e-06	k: 1	n:600000
KS ci ratio: 2.771852e+00	ci left: 4.219635e-08	ci right 9.286037e-06	k: 1	n:600000
NFE2L2   600000 perm   250 sec   (2397 perm/sec)   p_kst 1.666667e-06   p_cons 1.666667e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 6.047325e-06	k: 0	n:610000
Cons ci ratio: 2.771852e+00	ci left: 4.150460e-08	ci right 9.133807e-06	k: 1	n:610000
KS ci ratio: 2.771852e+00	ci left: 4.150460e-08	ci right 9.133807e-06	k: 1	n:610000
NFE2L2   610000 perm   257 sec   (2377 perm/sec)   p_kst 1.639344e-06   p_cons 1.639344e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.949788e-06	k: 0	n:620000
Cons ci ratio: 2.771852e+00	ci left: 4.083517e-08	ci right 8.986488e-06	k: 1	n:620000
KS ci ratio: 2.771852e+00	ci left: 4.083517e-08	ci right 8.986488e-06	k: 1	n:620000
NFE2L2   620000 perm   263 sec   (2358 perm/sec)   p_kst 1.612903e-06   p_cons 1.612903e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.855347e-06	k: 0	n:630000
Cons ci ratio: 2.771852e+00	ci left: 4.018700e-08	ci right 8.843846e-06	k: 1	n:630000
KS ci ratio: 2.771852e+00	ci left: 4.018700e-08	ci right 8.843846e-06	k: 1	n:630000
NFE2L2   630000 perm   269 sec   (2340 perm/sec)   p_kst 1.587302e-06   p_cons 1.587302e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.763858e-06	k: 0	n:640000
Cons ci ratio: 2.771852e+00	ci left: 3.955907e-08	ci right 8.705662e-06	k: 1	n:640000
KS ci ratio: 2.771852e+00	ci left: 3.955907e-08	ci right 8.705662e-06	k: 1	n:640000
NFE2L2   640000 perm   276 sec   (2321 perm/sec)   p_kst 1.562500e-06   p_cons 1.562500e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.675183e-06	k: 0	n:650000
Cons ci ratio: 2.771852e+00	ci left: 3.895047e-08	ci right 8.571729e-06	k: 1	n:650000
KS ci ratio: 2.771852e+00	ci left: 3.895047e-08	ci right 8.571729e-06	k: 1	n:650000
NFE2L2   650000 perm   282 sec   (2304 perm/sec)   p_kst 1.538462e-06   p_cons 1.538462e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.589196e-06	k: 0	n:660000
Cons ci ratio: 2.771852e+00	ci left: 3.836031e-08	ci right 8.441855e-06	k: 1	n:660000
KS ci ratio: 2.771852e+00	ci left: 3.836031e-08	ci right 8.441855e-06	k: 1	n:660000
NFE2L2   660000 perm   289 sec   (2285 perm/sec)   p_kst 1.515152e-06   p_cons 1.515152e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.505775e-06	k: 0	n:670000
Cons ci ratio: 2.771852e+00	ci left: 3.778777e-08	ci right 8.315857e-06	k: 1	n:670000
KS ci ratio: 2.771852e+00	ci left: 3.778777e-08	ci right 8.315857e-06	k: 1	n:670000
NFE2L2   670000 perm   296 sec   (2267 perm/sec)   p_kst 1.492537e-06   p_cons 1.492537e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.424808e-06	k: 0	n:680000
Cons ci ratio: 2.771852e+00	ci left: 3.723207e-08	ci right 8.193566e-06	k: 1	n:680000
KS ci ratio: 2.771852e+00	ci left: 3.723207e-08	ci right 8.193566e-06	k: 1	n:680000
NFE2L2   680000 perm   302 sec   (2250 perm/sec)   p_kst 1.470588e-06   p_cons 1.470588e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.346188e-06	k: 0	n:690000
Cons ci ratio: 2.771853e+00	ci left: 3.669247e-08	ci right 8.074819e-06	k: 1	n:690000
KS ci ratio: 2.771853e+00	ci left: 3.669247e-08	ci right 8.074819e-06	k: 1	n:690000
NFE2L2   690000 perm   309 sec   (2233 perm/sec)   p_kst 1.449275e-06   p_cons 1.449275e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.269814e-06	k: 0	n:700000
Cons ci ratio: 2.771853e+00	ci left: 3.616830e-08	ci right 7.959465e-06	k: 1	n:700000
KS ci ratio: 2.771853e+00	ci left: 3.616830e-08	ci right 7.959465e-06	k: 1	n:700000
NFE2L2   700000 perm   316 sec   (2217 perm/sec)   p_kst 1.428571e-06   p_cons 1.428571e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.195591e-06	k: 0	n:710000
Cons ci ratio: 2.771853e+00	ci left: 3.565888e-08	ci right 7.847360e-06	k: 1	n:710000
KS ci ratio: 2.771853e+00	ci left: 3.565888e-08	ci right 7.847360e-06	k: 1	n:710000
NFE2L2   710000 perm   323 sec   (2200 perm/sec)   p_kst 1.408451e-06   p_cons 1.408451e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 5.123431e-06	k: 0	n:720000
Cons ci ratio: 2.771853e+00	ci left: 3.516362e-08	ci right 7.738369e-06	k: 1	n:720000
KS ci ratio: 2.771853e+00	ci left: 3.516362e-08	ci right 7.738369e-06	k: 1	n:720000
NFE2L2   720000 perm   330 sec   (2184 perm/sec)   p_kst 1.388889e-06   p_cons 1.388889e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 5.053247e-06	k: 0	n:730000
Cons ci ratio: 2.771853e+00	ci left: 3.468193e-08	ci right 7.632364e-06	k: 1	n:730000
KS ci ratio: 2.771853e+00	ci left: 3.468193e-08	ci right 7.632364e-06	k: 1	n:730000
NFE2L2   730000 perm   337 sec   (2168 perm/sec)   p_kst 1.369863e-06   p_cons 1.369863e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.984960e-06	k: 0	n:740000
Cons ci ratio: 2.771853e+00	ci left: 3.421325e-08	ci right 7.529225e-06	k: 1	n:740000
KS ci ratio: 2.771853e+00	ci left: 3.421325e-08	ci right 7.529225e-06	k: 1	n:740000
NFE2L2   740000 perm   344 sec   (2152 perm/sec)   p_kst 1.351351e-06   p_cons 1.351351e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.918494e-06	k: 0	n:750000
Cons ci ratio: 2.771853e+00	ci left: 3.375708e-08	ci right 7.428835e-06	k: 1	n:750000
KS ci ratio: 2.771853e+00	ci left: 3.375708e-08	ci right 7.428835e-06	k: 1	n:750000
NFE2L2   750000 perm   351 sec   (2137 perm/sec)   p_kst 1.333333e-06   p_cons 1.333333e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.853777e-06	k: 0	n:760000
Cons ci ratio: 2.771853e+00	ci left: 3.331290e-08	ci right 7.331088e-06	k: 1	n:760000
KS ci ratio: 2.771853e+00	ci left: 3.331290e-08	ci right 7.331088e-06	k: 1	n:760000
NFE2L2   760000 perm   359 sec   (2119 perm/sec)   p_kst 1.315789e-06   p_cons 1.315789e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.790741e-06	k: 0	n:770000
Cons ci ratio: 2.771853e+00	ci left: 3.288027e-08	ci right 7.235879e-06	k: 1	n:770000
KS ci ratio: 2.771853e+00	ci left: 3.288027e-08	ci right 7.235879e-06	k: 1	n:770000
NFE2L2   770000 perm   366 sec   (2104 perm/sec)   p_kst 1.298701e-06   p_cons 1.298701e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.729321e-06	k: 0	n:780000
Cons ci ratio: 2.771853e+00	ci left: 3.245873e-08	ci right 7.143112e-06	k: 1	n:780000
KS ci ratio: 2.771853e+00	ci left: 3.245873e-08	ci right 7.143112e-06	k: 1	n:780000
NFE2L2   780000 perm   373 sec   (2089 perm/sec)   p_kst 1.282051e-06   p_cons 1.282051e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.669457e-06	k: 0	n:790000
Cons ci ratio: 2.771853e+00	ci left: 3.204786e-08	ci right 7.052693e-06	k: 1	n:790000
KS ci ratio: 2.771853e+00	ci left: 3.204786e-08	ci right 7.052693e-06	k: 1	n:790000
NFE2L2   790000 perm   381 sec   (2074 perm/sec)   p_kst 1.265823e-06   p_cons 1.265823e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.611089e-06	k: 0	n:800000
Cons ci ratio: 2.771853e+00	ci left: 3.164726e-08	ci right 6.964534e-06	k: 1	n:800000
KS ci ratio: 2.771853e+00	ci left: 3.164726e-08	ci right 6.964534e-06	k: 1	n:800000
NFE2L2   800000 perm   389 sec   (2059 perm/sec)   p_kst 1.250000e-06   p_cons 1.250000e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.554162e-06	k: 0	n:810000
Cons ci ratio: 2.771853e+00	ci left: 3.125655e-08	ci right 6.878553e-06	k: 1	n:810000
KS ci ratio: 2.771853e+00	ci left: 3.125655e-08	ci right 6.878553e-06	k: 1	n:810000
NFE2L2   810000 perm   396 sec   (2045 perm/sec)   p_kst 1.234568e-06   p_cons 1.234568e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.498623e-06	k: 0	n:820000
Cons ci ratio: 2.771854e+00	ci left: 3.087538e-08	ci right 6.794668e-06	k: 1	n:820000
KS ci ratio: 2.771854e+00	ci left: 3.087538e-08	ci right 6.794668e-06	k: 1	n:820000
NFE2L2   820000 perm   404 sec   (2032 perm/sec)   p_kst 1.219512e-06   p_cons 1.219512e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.444423e-06	k: 0	n:830000
Cons ci ratio: 2.771854e+00	ci left: 3.050338e-08	ci right 6.712805e-06	k: 1	n:830000
KS ci ratio: 2.771854e+00	ci left: 3.050338e-08	ci right 6.712805e-06	k: 1	n:830000
NFE2L2   830000 perm   411 sec   (2018 perm/sec)   p_kst 1.204819e-06   p_cons 1.204819e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.391514e-06	k: 0	n:840000
Cons ci ratio: 2.771854e+00	ci left: 3.014025e-08	ci right 6.632891e-06	k: 1	n:840000
KS ci ratio: 2.771854e+00	ci left: 3.014025e-08	ci right 6.632891e-06	k: 1	n:840000
NFE2L2   840000 perm   419 sec   (2003 perm/sec)   p_kst 1.190476e-06   p_cons 1.190476e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.339849e-06	k: 0	n:850000
Cons ci ratio: 2.771854e+00	ci left: 2.978566e-08	ci right 6.554857e-06	k: 1	n:850000
KS ci ratio: 2.771854e+00	ci left: 2.978566e-08	ci right 6.554857e-06	k: 1	n:850000
NFE2L2   850000 perm   427 sec   (1990 perm/sec)   p_kst 1.176471e-06   p_cons 1.176471e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.289386e-06	k: 0	n:860000
Cons ci ratio: 2.771854e+00	ci left: 2.943931e-08	ci right 6.478638e-06	k: 1	n:860000
KS ci ratio: 2.771854e+00	ci left: 2.943931e-08	ci right 6.478638e-06	k: 1	n:860000
NFE2L2   860000 perm   435 sec   (1976 perm/sec)   p_kst 1.162791e-06   p_cons 1.162791e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.240082e-06	k: 0	n:870000
Cons ci ratio: 2.771854e+00	ci left: 2.910093e-08	ci right 6.404171e-06	k: 1	n:870000
KS ci ratio: 2.771854e+00	ci left: 2.910093e-08	ci right 6.404171e-06	k: 1	n:870000
NFE2L2   870000 perm   443 sec   (1962 perm/sec)   p_kst 1.149425e-06   p_cons 1.149425e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.191900e-06	k: 0	n:880000
Cons ci ratio: 2.771854e+00	ci left: 2.877024e-08	ci right 6.331396e-06	k: 1	n:880000
KS ci ratio: 2.771854e+00	ci left: 2.877024e-08	ci right 6.331396e-06	k: 1	n:880000
NFE2L2   880000 perm   451 sec   (1949 perm/sec)   p_kst 1.136364e-06   p_cons 1.136364e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.144800e-06	k: 0	n:890000
Cons ci ratio: 2.771854e+00	ci left: 2.844697e-08	ci right 6.260257e-06	k: 1	n:890000
KS ci ratio: 2.771854e+00	ci left: 2.844697e-08	ci right 6.260257e-06	k: 1	n:890000
NFE2L2   890000 perm   460 sec   (1936 perm/sec)   p_kst 1.123596e-06   p_cons 1.123596e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.098747e-06	k: 0	n:900000
Cons ci ratio: 2.771854e+00	ci left: 2.813090e-08	ci right 6.190699e-06	k: 1	n:900000
KS ci ratio: 2.771854e+00	ci left: 2.813090e-08	ci right 6.190699e-06	k: 1	n:900000
NFE2L2   900000 perm   468 sec   (1924 perm/sec)   p_kst 1.111111e-06   p_cons 1.111111e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.053705e-06	k: 0	n:910000
Cons ci ratio: 2.771854e+00	ci left: 2.782177e-08	ci right 6.122670e-06	k: 1	n:910000
KS ci ratio: 2.771854e+00	ci left: 2.782177e-08	ci right 6.122670e-06	k: 1	n:910000
NFE2L2   910000 perm   476 sec   (1911 perm/sec)   p_kst 1.098901e-06   p_cons 1.098901e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.009644e-06	k: 0	n:920000
Cons ci ratio: 2.771854e+00	ci left: 2.751936e-08	ci right 6.056119e-06	k: 1	n:920000
KS ci ratio: 2.771854e+00	ci left: 2.751936e-08	ci right 6.056119e-06	k: 1	n:920000
NFE2L2   920000 perm   485 sec   (1898 perm/sec)   p_kst 1.086957e-06   p_cons 1.086957e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.966529e-06	k: 0	n:930000
Cons ci ratio: 2.771854e+00	ci left: 2.722345e-08	ci right 5.991000e-06	k: 1	n:930000
KS ci ratio: 2.771854e+00	ci left: 2.722345e-08	ci right 5.991000e-06	k: 1	n:930000
NFE2L2   930000 perm   493 sec   (1885 perm/sec)   p_kst 1.075269e-06   p_cons 1.075269e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.924332e-06	k: 0	n:940000
Cons ci ratio: 2.771854e+00	ci left: 2.693384e-08	ci right 5.927266e-06	k: 1	n:940000
KS ci ratio: 2.771854e+00	ci left: 2.693384e-08	ci right 5.927266e-06	k: 1	n:940000
NFE2L2   940000 perm   502 sec   (1873 perm/sec)   p_kst 1.063830e-06   p_cons 1.063830e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.883023e-06	k: 0	n:950000
Cons ci ratio: 2.771854e+00	ci left: 2.665032e-08	ci right 5.864874e-06	k: 1	n:950000
KS ci ratio: 2.771854e+00	ci left: 2.665032e-08	ci right 5.864874e-06	k: 1	n:950000
NFE2L2   950000 perm   510 sec   (1861 perm/sec)   p_kst 1.052632e-06   p_cons 1.052632e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.842575e-06	k: 0	n:960000
Cons ci ratio: 2.771854e+00	ci left: 2.637272e-08	ci right 5.803781e-06	k: 1	n:960000
KS ci ratio: 2.771854e+00	ci left: 2.637272e-08	ci right 5.803781e-06	k: 1	n:960000
NFE2L2   960000 perm   519 sec   (1849 perm/sec)   p_kst 1.041667e-06   p_cons 1.041667e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.802961e-06	k: 0	n:970000
Cons ci ratio: 2.771854e+00	ci left: 2.610083e-08	ci right 5.743949e-06	k: 1	n:970000
KS ci ratio: 2.771854e+00	ci left: 2.610083e-08	ci right 5.743949e-06	k: 1	n:970000
NFE2L2   970000 perm   528 sec   (1837 perm/sec)   p_kst 1.030928e-06   p_cons 1.030928e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.764156e-06	k: 0	n:980000
Cons ci ratio: 2.771854e+00	ci left: 2.583450e-08	ci right 5.685337e-06	k: 1	n:980000
KS ci ratio: 2.771854e+00	ci left: 2.583450e-08	ci right 5.685337e-06	k: 1	n:980000
NFE2L2   980000 perm   537 sec   (1825 perm/sec)   p_kst 1.020408e-06   p_cons 1.020408e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.726134e-06	k: 0	n:990000
Cons ci ratio: 2.771854e+00	ci left: 2.557354e-08	ci right 5.627910e-06	k: 1	n:990000
KS ci ratio: 2.771854e+00	ci left: 2.557354e-08	ci right 5.627910e-06	k: 1	n:990000
NFE2L2   990000 perm   546 sec   (1813 perm/sec)   p_kst 1.010101e-06   p_cons 1.010101e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.688873e-06	k: 0	n:1000000
Cons ci ratio: 2.771854e+00	ci left: 2.531781e-08	ci right 5.571631e-06	k: 1	n:1000000
KS ci ratio: 2.771854e+00	ci left: 2.531781e-08	ci right 5.571631e-06	k: 1	n:1000000
NFE2L2   1000000 perm   555 sec   (1802 perm/sec)   p_kst 1.000000e-06   p_cons 1.000000e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.652349e-06	k: 0	n:1010000
Cons ci ratio: 2.771854e+00	ci left: 2.506714e-08	ci right 5.516466e-06	k: 1	n:1010000
KS ci ratio: 2.771854e+00	ci left: 2.506714e-08	ci right 5.516466e-06	k: 1	n:1010000
NFE2L2   1010000 perm   564 sec   (1791 perm/sec)   p_kst 9.900990e-07   p_cons 9.900990e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.616542e-06	k: 0	n:1020000
Cons ci ratio: 2.771855e+00	ci left: 2.482138e-08	ci right 5.462383e-06	k: 1	n:1020000
KS ci ratio: 2.771855e+00	ci left: 2.482138e-08	ci right 5.462383e-06	k: 1	n:1020000
NFE2L2   1020000 perm   573 sec   (1780 perm/sec)   p_kst 9.803922e-07   p_cons 9.803922e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.581430e-06	k: 0	n:1030000
Cons ci ratio: 2.771855e+00	ci left: 2.458040e-08	ci right 5.409351e-06	k: 1	n:1030000
KS ci ratio: 2.771855e+00	ci left: 2.458040e-08	ci right 5.409351e-06	k: 1	n:1030000
NFE2L2   1030000 perm   582 sec   (1769 perm/sec)   p_kst 9.708738e-07   p_cons 9.708738e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.546993e-06	k: 0	n:1040000
Cons ci ratio: 2.771855e+00	ci left: 2.434405e-08	ci right 5.357338e-06	k: 1	n:1040000
KS ci ratio: 2.771855e+00	ci left: 2.434405e-08	ci right 5.357338e-06	k: 1	n:1040000
NFE2L2   1040000 perm   592 sec   (1758 perm/sec)   p_kst 9.615385e-07   p_cons 9.615385e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.513212e-06	k: 0	n:1050000
Cons ci ratio: 2.771855e+00	ci left: 2.411220e-08	ci right 5.306315e-06	k: 1	n:1050000
KS ci ratio: 2.771855e+00	ci left: 2.411220e-08	ci right 5.306315e-06	k: 1	n:1050000
NFE2L2   1050000 perm   601 sec   (1747 perm/sec)   p_kst 9.523810e-07   p_cons 9.523810e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.480069e-06	k: 0	n:1060000
Cons ci ratio: 2.771855e+00	ci left: 2.388472e-08	ci right 5.256256e-06	k: 1	n:1060000
KS ci ratio: 2.771855e+00	ci left: 2.388472e-08	ci right 5.256256e-06	k: 1	n:1060000
NFE2L2   1060000 perm   610 sec   (1736 perm/sec)   p_kst 9.433962e-07   p_cons 9.433962e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.447545e-06	k: 0	n:1070000
Cons ci ratio: 2.771855e+00	ci left: 2.366150e-08	ci right 5.207132e-06	k: 1	n:1070000
KS ci ratio: 2.771855e+00	ci left: 2.366150e-08	ci right 5.207132e-06	k: 1	n:1070000
NFE2L2   1070000 perm   620 sec   (1727 perm/sec)   p_kst 9.345794e-07   p_cons 9.345794e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.415623e-06	k: 0	n:1080000
Cons ci ratio: 2.771855e+00	ci left: 2.344241e-08	ci right 5.158918e-06	k: 1	n:1080000
KS ci ratio: 2.771855e+00	ci left: 2.344241e-08	ci right 5.158918e-06	k: 1	n:1080000
NFE2L2   1080000 perm   629 sec   (1717 perm/sec)   p_kst 9.259259e-07   p_cons 9.259259e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.384287e-06	k: 0	n:1090000
Cons ci ratio: 2.771855e+00	ci left: 2.322735e-08	ci right 5.111589e-06	k: 1	n:1090000
KS ci ratio: 2.771855e+00	ci left: 2.322735e-08	ci right 5.111589e-06	k: 1	n:1090000
NFE2L2   1090000 perm   639 sec   (1707 perm/sec)   p_kst 9.174312e-07   p_cons 9.174312e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.353521e-06	k: 0	n:1100000
Cons ci ratio: 2.771855e+00	ci left: 2.301619e-08	ci right 5.065120e-06	k: 1	n:1100000
KS ci ratio: 2.771855e+00	ci left: 2.301619e-08	ci right 5.065120e-06	k: 1	n:1100000
NFE2L2   1100000 perm   649 sec   (1696 perm/sec)   p_kst 9.090909e-07   p_cons 9.090909e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.323309e-06	k: 0	n:1110000
Cons ci ratio: 2.771855e+00	ci left: 2.280884e-08	ci right 5.019488e-06	k: 1	n:1110000
KS ci ratio: 2.771855e+00	ci left: 2.280884e-08	ci right 5.019488e-06	k: 1	n:1110000
NFE2L2   1110000 perm   658 sec   (1686 perm/sec)   p_kst 9.009009e-07   p_cons 9.009009e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.293637e-06	k: 0	n:1120000
Cons ci ratio: 2.771855e+00	ci left: 2.260519e-08	ci right 4.974671e-06	k: 1	n:1120000
KS ci ratio: 2.771855e+00	ci left: 2.260519e-08	ci right 4.974671e-06	k: 1	n:1120000
NFE2L2   1120000 perm   668 sec   (1677 perm/sec)   p_kst 8.928571e-07   p_cons 8.928571e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.264490e-06	k: 0	n:1130000
Cons ci ratio: 2.771855e+00	ci left: 2.240514e-08	ci right 4.930648e-06	k: 1	n:1130000
KS ci ratio: 2.771855e+00	ci left: 2.240514e-08	ci right 4.930648e-06	k: 1	n:1130000
NFE2L2   1130000 perm   678 sec   (1667 perm/sec)   p_kst 8.849558e-07   p_cons 8.849558e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.235854e-06	k: 0	n:1140000
Cons ci ratio: 2.771855e+00	ci left: 2.220860e-08	ci right 4.887397e-06	k: 1	n:1140000
KS ci ratio: 2.771855e+00	ci left: 2.220860e-08	ci right 4.887397e-06	k: 1	n:1140000
NFE2L2   1140000 perm   688 sec   (1657 perm/sec)   p_kst 8.771930e-07   p_cons 8.771930e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.207716e-06	k: 0	n:1150000
Cons ci ratio: 2.771855e+00	ci left: 2.201548e-08	ci right 4.844898e-06	k: 1	n:1150000
KS ci ratio: 2.771855e+00	ci left: 2.201548e-08	ci right 4.844898e-06	k: 1	n:1150000
NFE2L2   1150000 perm   698 sec   (1648 perm/sec)   p_kst 8.695652e-07   p_cons 8.695652e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.180063e-06	k: 0	n:1160000
Cons ci ratio: 2.771855e+00	ci left: 2.182570e-08	ci right 4.803131e-06	k: 1	n:1160000
KS ci ratio: 2.771855e+00	ci left: 2.182570e-08	ci right 4.803131e-06	k: 1	n:1160000
NFE2L2   1160000 perm   708 sec   (1639 perm/sec)   p_kst 8.620690e-07   p_cons 8.620690e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.152883e-06	k: 0	n:1170000
Cons ci ratio: 2.771855e+00	ci left: 2.163915e-08	ci right 4.762079e-06	k: 1	n:1170000
KS ci ratio: 2.771855e+00	ci left: 2.163915e-08	ci right 4.762079e-06	k: 1	n:1170000
NFE2L2   1170000 perm   718 sec   (1630 perm/sec)   p_kst 8.547009e-07   p_cons 8.547009e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.126164e-06	k: 0	n:1180000
Cons ci ratio: 2.771855e+00	ci left: 2.145577e-08	ci right 4.721723e-06	k: 1	n:1180000
KS ci ratio: 2.771855e+00	ci left: 2.145577e-08	ci right 4.721723e-06	k: 1	n:1180000
NFE2L2   1180000 perm   728 sec   (1620 perm/sec)   p_kst 8.474576e-07   p_cons 8.474576e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.099894e-06	k: 0	n:1190000
Cons ci ratio: 2.771855e+00	ci left: 2.127547e-08	ci right 4.682044e-06	k: 1	n:1190000
KS ci ratio: 2.771855e+00	ci left: 2.127547e-08	ci right 4.682044e-06	k: 1	n:1190000
NFE2L2   1190000 perm   738 sec   (1612 perm/sec)   p_kst 8.403361e-07   p_cons 8.403361e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.074061e-06	k: 0	n:1200000
Cons ci ratio: 2.771855e+00	ci left: 2.109817e-08	ci right 4.643027e-06	k: 1	n:1200000
KS ci ratio: 2.771855e+00	ci left: 2.109817e-08	ci right 4.643027e-06	k: 1	n:1200000
NFE2L2   1200000 perm   748 sec   (1603 perm/sec)   p_kst 8.333333e-07   p_cons 8.333333e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.048656e-06	k: 0	n:1210000
Cons ci ratio: 2.771855e+00	ci left: 2.092381e-08	ci right 4.604655e-06	k: 1	n:1210000
KS ci ratio: 2.771855e+00	ci left: 2.092381e-08	ci right 4.604655e-06	k: 1	n:1210000
NFE2L2   1210000 perm   759 sec   (1595 perm/sec)   p_kst 8.264463e-07   p_cons 8.264463e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.023667e-06	k: 0	n:1220000
Cons ci ratio: 2.771855e+00	ci left: 2.075230e-08	ci right 4.566912e-06	k: 1	n:1220000
KS ci ratio: 2.771855e+00	ci left: 2.075230e-08	ci right 4.566912e-06	k: 1	n:1220000
NFE2L2   1220000 perm   769 sec   (1586 perm/sec)   p_kst 8.196721e-07   p_cons 8.196721e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.999084e-06	k: 0	n:1230000
Cons ci ratio: 2.771855e+00	ci left: 2.058358e-08	ci right 4.529783e-06	k: 1	n:1230000
KS ci ratio: 2.771855e+00	ci left: 2.058358e-08	ci right 4.529783e-06	k: 1	n:1230000
NFE2L2   1230000 perm   779 sec   (1578 perm/sec)   p_kst 8.130081e-07   p_cons 8.130081e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.974898e-06	k: 0	n:1240000
Cons ci ratio: 2.771855e+00	ci left: 2.041759e-08	ci right 4.493253e-06	k: 1	n:1240000
KS ci ratio: 2.771855e+00	ci left: 2.041759e-08	ci right 4.493253e-06	k: 1	n:1240000
NFE2L2   1240000 perm   790 sec   (1570 perm/sec)   p_kst 8.064516e-07   p_cons 8.064516e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.951099e-06	k: 0	n:1250000
Cons ci ratio: 2.771855e+00	ci left: 2.025425e-08	ci right 4.457307e-06	k: 1	n:1250000
KS ci ratio: 2.771855e+00	ci left: 2.025425e-08	ci right 4.457307e-06	k: 1	n:1250000
NFE2L2   1250000 perm   801 sec   (1561 perm/sec)   p_kst 8.000000e-07   p_cons 8.000000e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.927678e-06	k: 0	n:1260000
Cons ci ratio: 2.771855e+00	ci left: 2.009350e-08	ci right 4.421931e-06	k: 1	n:1260000
KS ci ratio: 2.771855e+00	ci left: 2.009350e-08	ci right 4.421931e-06	k: 1	n:1260000
NFE2L2   1260000 perm   811 sec   (1553 perm/sec)   p_kst 7.936508e-07   p_cons 7.936508e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.904625e-06	k: 0	n:1270000
Cons ci ratio: 2.771855e+00	ci left: 1.993528e-08	ci right 4.387113e-06	k: 1	n:1270000
KS ci ratio: 2.771855e+00	ci left: 1.993528e-08	ci right 4.387113e-06	k: 1	n:1270000
NFE2L2   1270000 perm   822 sec   (1545 perm/sec)   p_kst 7.874016e-07   p_cons 7.874016e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.881933e-06	k: 0	n:1280000
Cons ci ratio: 2.771855e+00	ci left: 1.977954e-08	ci right 4.352839e-06	k: 1	n:1280000
KS ci ratio: 2.771855e+00	ci left: 1.977954e-08	ci right 4.352839e-06	k: 1	n:1280000
NFE2L2   1280000 perm   833 sec   (1537 perm/sec)   p_kst 7.812500e-07   p_cons 7.812500e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.859592e-06	k: 0	n:1290000
Cons ci ratio: 2.771855e+00	ci left: 1.962621e-08	ci right 4.319096e-06	k: 1	n:1290000
KS ci ratio: 2.771855e+00	ci left: 1.962621e-08	ci right 4.319096e-06	k: 1	n:1290000
NFE2L2   1290000 perm   844 sec   (1529 perm/sec)   p_kst 7.751938e-07   p_cons 7.751938e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.837596e-06	k: 0	n:1300000
Cons ci ratio: 2.771855e+00	ci left: 1.947524e-08	ci right 4.285872e-06	k: 1	n:1300000
KS ci ratio: 2.771855e+00	ci left: 1.947524e-08	ci right 4.285872e-06	k: 1	n:1300000
NFE2L2   1300000 perm   854 sec   (1522 perm/sec)   p_kst 7.692308e-07   p_cons 7.692308e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.815935e-06	k: 0	n:1310000
Cons ci ratio: 2.771855e+00	ci left: 1.932657e-08	ci right 4.253155e-06	k: 1	n:1310000
KS ci ratio: 2.771855e+00	ci left: 1.932657e-08	ci right 4.253155e-06	k: 1	n:1310000
NFE2L2   1310000 perm   866 sec   (1513 perm/sec)   p_kst 7.633588e-07   p_cons 7.633588e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.794602e-06	k: 0	n:1320000
Cons ci ratio: 2.771855e+00	ci left: 1.918016e-08	ci right 4.220935e-06	k: 1	n:1320000
KS ci ratio: 2.771855e+00	ci left: 1.918016e-08	ci right 4.220935e-06	k: 1	n:1320000
NFE2L2   1320000 perm   877 sec   (1504 perm/sec)   p_kst 7.575758e-07   p_cons 7.575758e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.773590e-06	k: 0	n:1330000
Cons ci ratio: 2.771855e+00	ci left: 1.903595e-08	ci right 4.189198e-06	k: 1	n:1330000
KS ci ratio: 2.771855e+00	ci left: 1.903595e-08	ci right 4.189198e-06	k: 1	n:1330000
NFE2L2   1330000 perm   889 sec   (1497 perm/sec)   p_kst 7.518797e-07   p_cons 7.518797e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.752891e-06	k: 0	n:1340000
Cons ci ratio: 2.771855e+00	ci left: 1.889389e-08	ci right 4.157936e-06	k: 1	n:1340000
KS ci ratio: 2.771855e+00	ci left: 1.889389e-08	ci right 4.157936e-06	k: 1	n:1340000
NFE2L2   1340000 perm   900 sec   (1489 perm/sec)   p_kst 7.462687e-07   p_cons 7.462687e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.732500e-06	k: 0	n:1350000
Cons ci ratio: 2.771856e+00	ci left: 1.875393e-08	ci right 4.127136e-06	k: 1	n:1350000
KS ci ratio: 2.771856e+00	ci left: 1.875393e-08	ci right 4.127136e-06	k: 1	n:1350000
NFE2L2   1350000 perm   911 sec   (1482 perm/sec)   p_kst 7.407407e-07   p_cons 7.407407e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.712408e-06	k: 0	n:1360000
Cons ci ratio: 2.771856e+00	ci left: 1.861604e-08	ci right 4.096790e-06	k: 1	n:1360000
KS ci ratio: 2.771856e+00	ci left: 1.861604e-08	ci right 4.096790e-06	k: 1	n:1360000
NFE2L2   1360000 perm   922 sec   (1475 perm/sec)   p_kst 7.352941e-07   p_cons 7.352941e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.692609e-06	k: 0	n:1370000
Cons ci ratio: 2.771856e+00	ci left: 1.848015e-08	ci right 4.066886e-06	k: 1	n:1370000
KS ci ratio: 2.771856e+00	ci left: 1.848015e-08	ci right 4.066886e-06	k: 1	n:1370000
NFE2L2   1370000 perm   934 sec   (1467 perm/sec)   p_kst 7.299270e-07   p_cons 7.299270e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.673097e-06	k: 0	n:1380000
Cons ci ratio: 2.771856e+00	ci left: 1.834624e-08	ci right 4.037416e-06	k: 1	n:1380000
KS ci ratio: 2.771856e+00	ci left: 1.834624e-08	ci right 4.037416e-06	k: 1	n:1380000
NFE2L2   1380000 perm   945 sec   (1460 perm/sec)   p_kst 7.246377e-07   p_cons 7.246377e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.653867e-06	k: 0	n:1390000
Cons ci ratio: 2.771856e+00	ci left: 1.821425e-08	ci right 4.008370e-06	k: 1	n:1390000
KS ci ratio: 2.771856e+00	ci left: 1.821425e-08	ci right 4.008370e-06	k: 1	n:1390000
NFE2L2   1390000 perm   957 sec   (1453 perm/sec)   p_kst 7.194245e-07   p_cons 7.194245e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.634910e-06	k: 0	n:1400000
Cons ci ratio: 2.771856e+00	ci left: 1.808415e-08	ci right 3.979739e-06	k: 1	n:1400000
KS ci ratio: 2.771856e+00	ci left: 1.808415e-08	ci right 3.979739e-06	k: 1	n:1400000
NFE2L2   1400000 perm   968 sec   (1446 perm/sec)   p_kst 7.142857e-07   p_cons 7.142857e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.616223e-06	k: 0	n:1410000
Cons ci ratio: 2.771856e+00	ci left: 1.795589e-08	ci right 3.951514e-06	k: 1	n:1410000
KS ci ratio: 2.771856e+00	ci left: 1.795589e-08	ci right 3.951514e-06	k: 1	n:1410000
NFE2L2   1410000 perm   980 sec   (1439 perm/sec)   p_kst 7.092199e-07   p_cons 7.092199e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.597799e-06	k: 0	n:1420000
Cons ci ratio: 2.771856e+00	ci left: 1.782944e-08	ci right 3.923686e-06	k: 1	n:1420000
KS ci ratio: 2.771856e+00	ci left: 1.782944e-08	ci right 3.923686e-06	k: 1	n:1420000
NFE2L2   1420000 perm   991 sec   (1432 perm/sec)   p_kst 7.042254e-07   p_cons 7.042254e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.579633e-06	k: 0	n:1430000
Cons ci ratio: 2.771856e+00	ci left: 1.770476e-08	ci right 3.896248e-06	k: 1	n:1430000
KS ci ratio: 2.771856e+00	ci left: 1.770476e-08	ci right 3.896248e-06	k: 1	n:1430000
NFE2L2   1430000 perm   1003 sec   (1426 perm/sec)   p_kst 6.993007e-07   p_cons 6.993007e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.561719e-06	k: 0	n:1440000
Cons ci ratio: 2.771856e+00	ci left: 1.758181e-08	ci right 3.869191e-06	k: 1	n:1440000
KS ci ratio: 2.771856e+00	ci left: 1.758181e-08	ci right 3.869191e-06	k: 1	n:1440000
NFE2L2   1440000 perm   1015 sec   (1419 perm/sec)   p_kst 6.944444e-07   p_cons 6.944444e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.544052e-06	k: 0	n:1450000
Cons ci ratio: 2.771856e+00	ci left: 1.746056e-08	ci right 3.842507e-06	k: 1	n:1450000
KS ci ratio: 2.771856e+00	ci left: 1.746056e-08	ci right 3.842507e-06	k: 1	n:1450000
NFE2L2   1450000 perm   1027 sec   (1412 perm/sec)   p_kst 6.896552e-07   p_cons 6.896552e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.526627e-06	k: 0	n:1460000
Cons ci ratio: 2.771856e+00	ci left: 1.734096e-08	ci right 3.816188e-06	k: 1	n:1460000
KS ci ratio: 2.771856e+00	ci left: 1.734096e-08	ci right 3.816188e-06	k: 1	n:1460000
NFE2L2   1460000 perm   1039 sec   (1406 perm/sec)   p_kst 6.849315e-07   p_cons 6.849315e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.509439e-06	k: 0	n:1470000
Cons ci ratio: 2.771856e+00	ci left: 1.722300e-08	ci right 3.790228e-06	k: 1	n:1470000
KS ci ratio: 2.771856e+00	ci left: 1.722300e-08	ci right 3.790228e-06	k: 1	n:1470000
NFE2L2   1470000 perm   1051 sec   (1399 perm/sec)   p_kst 6.802721e-07   p_cons 6.802721e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.492483e-06	k: 0	n:1480000
Cons ci ratio: 2.771856e+00	ci left: 1.710663e-08	ci right 3.764618e-06	k: 1	n:1480000
KS ci ratio: 2.771856e+00	ci left: 1.710663e-08	ci right 3.764618e-06	k: 1	n:1480000
NFE2L2   1480000 perm   1063 sec   (1393 perm/sec)   p_kst 6.756757e-07   p_cons 6.756757e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.475755e-06	k: 0	n:1490000
Cons ci ratio: 2.771856e+00	ci left: 1.699182e-08	ci right 3.739352e-06	k: 1	n:1490000
KS ci ratio: 2.771856e+00	ci left: 1.699182e-08	ci right 3.739352e-06	k: 1	n:1490000
NFE2L2   1490000 perm   1075 sec   (1386 perm/sec)   p_kst 6.711409e-07   p_cons 6.711409e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.459250e-06	k: 0	n:1500000
Cons ci ratio: 2.771856e+00	ci left: 1.687854e-08	ci right 3.714423e-06	k: 1	n:1500000
KS ci ratio: 2.771856e+00	ci left: 1.687854e-08	ci right 3.714423e-06	k: 1	n:1500000
NFE2L2   1500000 perm   1087 sec   (1380 perm/sec)   p_kst 6.666667e-07   p_cons 6.666667e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.442964e-06	k: 0	n:1510000
Cons ci ratio: 2.771856e+00	ci left: 1.676676e-08	ci right 3.689824e-06	k: 1	n:1510000
KS ci ratio: 2.771856e+00	ci left: 1.676676e-08	ci right 3.689824e-06	k: 1	n:1510000
NFE2L2   1510000 perm   1100 sec   (1373 perm/sec)   p_kst 6.622517e-07   p_cons 6.622517e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.426891e-06	k: 0	n:1520000
Cons ci ratio: 2.771856e+00	ci left: 1.665645e-08	ci right 3.665549e-06	k: 1	n:1520000
KS ci ratio: 2.771856e+00	ci left: 1.665645e-08	ci right 3.665549e-06	k: 1	n:1520000
NFE2L2   1520000 perm   1112 sec   (1367 perm/sec)   p_kst 6.578947e-07   p_cons 6.578947e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.411029e-06	k: 0	n:1530000
Cons ci ratio: 2.771856e+00	ci left: 1.654759e-08	ci right 3.641592e-06	k: 1	n:1530000
KS ci ratio: 2.771856e+00	ci left: 1.654759e-08	ci right 3.641592e-06	k: 1	n:1530000
NFE2L2   1530000 perm   1125 sec   (1360 perm/sec)   p_kst 6.535948e-07   p_cons 6.535948e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.395373e-06	k: 0	n:1540000
Cons ci ratio: 2.771856e+00	ci left: 1.644014e-08	ci right 3.617945e-06	k: 1	n:1540000
KS ci ratio: 2.771856e+00	ci left: 1.644014e-08	ci right 3.617945e-06	k: 1	n:1540000
NFE2L2   1540000 perm   1137 sec   (1354 perm/sec)   p_kst 6.493506e-07   p_cons 6.493506e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.379919e-06	k: 0	n:1550000
Cons ci ratio: 2.771856e+00	ci left: 1.633407e-08	ci right 3.594603e-06	k: 1	n:1550000
KS ci ratio: 2.771856e+00	ci left: 1.633407e-08	ci right 3.594603e-06	k: 1	n:1550000
NFE2L2   1550000 perm   1150 sec   (1348 perm/sec)   p_kst 6.451613e-07   p_cons 6.451613e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.364664e-06	k: 0	n:1560000
Cons ci ratio: 2.771856e+00	ci left: 1.622936e-08	ci right 3.571561e-06	k: 1	n:1560000
KS ci ratio: 2.771856e+00	ci left: 1.622936e-08	ci right 3.571561e-06	k: 1	n:1560000
NFE2L2   1560000 perm   1163 sec   (1341 perm/sec)   p_kst 6.410256e-07   p_cons 6.410256e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.349602e-06	k: 0	n:1570000
Cons ci ratio: 2.771856e+00	ci left: 1.612599e-08	ci right 3.548812e-06	k: 1	n:1570000
KS ci ratio: 2.771856e+00	ci left: 1.612599e-08	ci right 3.548812e-06	k: 1	n:1570000
NFE2L2   1570000 perm   1176 sec   (1335 perm/sec)   p_kst 6.369427e-07   p_cons 6.369427e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.334731e-06	k: 0	n:1580000
Cons ci ratio: 2.771856e+00	ci left: 1.602393e-08	ci right 3.526351e-06	k: 1	n:1580000
KS ci ratio: 2.771856e+00	ci left: 1.602393e-08	ci right 3.526351e-06	k: 1	n:1580000
NFE2L2   1580000 perm   1189 sec   (1329 perm/sec)   p_kst 6.329114e-07   p_cons 6.329114e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.320047e-06	k: 0	n:1590000
Cons ci ratio: 2.771856e+00	ci left: 1.592315e-08	ci right 3.504173e-06	k: 1	n:1590000
KS ci ratio: 2.771856e+00	ci left: 1.592315e-08	ci right 3.504173e-06	k: 1	n:1590000
NFE2L2   1590000 perm   1201 sec   (1323 perm/sec)   p_kst 6.289308e-07   p_cons 6.289308e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.305547e-06	k: 0	n:1600000
Cons ci ratio: 2.771856e+00	ci left: 1.582363e-08	ci right 3.482272e-06	k: 1	n:1600000
KS ci ratio: 2.771856e+00	ci left: 1.582363e-08	ci right 3.482272e-06	k: 1	n:1600000
NFE2L2   1600000 perm   1214 sec   (1318 perm/sec)   p_kst 6.250000e-07   p_cons 6.250000e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.291227e-06	k: 0	n:1610000
Cons ci ratio: 2.771856e+00	ci left: 1.572535e-08	ci right 3.460643e-06	k: 1	n:1610000
KS ci ratio: 2.771856e+00	ci left: 1.572535e-08	ci right 3.460643e-06	k: 1	n:1610000
NFE2L2   1610000 perm   1227 sec   (1312 perm/sec)   p_kst 6.211180e-07   p_cons 6.211180e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.277083e-06	k: 0	n:1620000
Cons ci ratio: 2.771856e+00	ci left: 1.562828e-08	ci right 3.439281e-06	k: 1	n:1620000
KS ci ratio: 2.771856e+00	ci left: 1.562828e-08	ci right 3.439281e-06	k: 1	n:1620000
NFE2L2   1620000 perm   1241 sec   (1306 perm/sec)   p_kst 6.172840e-07   p_cons 6.172840e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.263114e-06	k: 0	n:1630000
Cons ci ratio: 2.771856e+00	ci left: 1.553240e-08	ci right 3.418181e-06	k: 1	n:1630000
KS ci ratio: 2.771856e+00	ci left: 1.553240e-08	ci right 3.418181e-06	k: 1	n:1630000
NFE2L2   1630000 perm   1254 sec   (1300 perm/sec)   p_kst 6.134969e-07   p_cons 6.134969e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.249314e-06	k: 0	n:1640000
Cons ci ratio: 2.771856e+00	ci left: 1.543769e-08	ci right 3.397339e-06	k: 1	n:1640000
KS ci ratio: 2.771856e+00	ci left: 1.543769e-08	ci right 3.397339e-06	k: 1	n:1640000
NFE2L2   1640000 perm   1267 sec   (1294 perm/sec)   p_kst 6.097561e-07   p_cons 6.097561e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.235682e-06	k: 0	n:1650000
Cons ci ratio: 2.771856e+00	ci left: 1.534413e-08	ci right 3.376749e-06	k: 1	n:1650000
KS ci ratio: 2.771856e+00	ci left: 1.534413e-08	ci right 3.376749e-06	k: 1	n:1650000
NFE2L2   1650000 perm   1281 sec   (1288 perm/sec)   p_kst 6.060606e-07   p_cons 6.060606e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.222214e-06	k: 0	n:1660000
Cons ci ratio: 2.771856e+00	ci left: 1.525169e-08	ci right 3.356407e-06	k: 1	n:1660000
KS ci ratio: 2.771856e+00	ci left: 1.525169e-08	ci right 3.356407e-06	k: 1	n:1660000
NFE2L2   1660000 perm   1294 sec   (1283 perm/sec)   p_kst 6.024096e-07   p_cons 6.024096e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.208907e-06	k: 0	n:1670000
Cons ci ratio: 2.771856e+00	ci left: 1.516036e-08	ci right 3.336309e-06	k: 1	n:1670000
KS ci ratio: 2.771856e+00	ci left: 1.516036e-08	ci right 3.336309e-06	k: 1	n:1670000
NFE2L2   1670000 perm   1308 sec   (1277 perm/sec)   p_kst 5.988024e-07   p_cons 5.988024e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.195759e-06	k: 0	n:1680000
Cons ci ratio: 2.771856e+00	ci left: 1.507012e-08	ci right 3.316450e-06	k: 1	n:1680000
KS ci ratio: 2.771856e+00	ci left: 1.507012e-08	ci right 3.316450e-06	k: 1	n:1680000
NFE2L2   1680000 perm   1321 sec   (1271 perm/sec)   p_kst 5.952381e-07   p_cons 5.952381e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.182767e-06	k: 0	n:1690000
Cons ci ratio: 2.771856e+00	ci left: 1.498095e-08	ci right 3.296826e-06	k: 1	n:1690000
KS ci ratio: 2.771856e+00	ci left: 1.498095e-08	ci right 3.296826e-06	k: 1	n:1690000
NFE2L2   1690000 perm   1335 sec   (1266 perm/sec)   p_kst 5.917160e-07   p_cons 5.917160e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.169927e-06	k: 0	n:1700000
Cons ci ratio: 2.771856e+00	ci left: 1.489283e-08	ci right 3.277433e-06	k: 1	n:1700000
KS ci ratio: 2.771856e+00	ci left: 1.489283e-08	ci right 3.277433e-06	k: 1	n:1700000
NFE2L2   1700000 perm   1349 sec   (1260 perm/sec)   p_kst 5.882353e-07   p_cons 5.882353e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.157237e-06	k: 0	n:1710000
Cons ci ratio: 2.771856e+00	ci left: 1.480574e-08	ci right 3.258267e-06	k: 1	n:1710000
KS ci ratio: 2.771856e+00	ci left: 1.480574e-08	ci right 3.258267e-06	k: 1	n:1710000
NFE2L2   1710000 perm   1363 sec   (1255 perm/sec)   p_kst 5.847953e-07   p_cons 5.847953e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.144695e-06	k: 0	n:1720000
Cons ci ratio: 2.771856e+00	ci left: 1.471966e-08	ci right 3.239323e-06	k: 1	n:1720000
KS ci ratio: 2.771856e+00	ci left: 1.471966e-08	ci right 3.239323e-06	k: 1	n:1720000
NFE2L2   1720000 perm   1377 sec   (1249 perm/sec)   p_kst 5.813953e-07   p_cons 5.813953e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.132298e-06	k: 0	n:1730000
Cons ci ratio: 2.771856e+00	ci left: 1.463457e-08	ci right 3.220599e-06	k: 1	n:1730000
KS ci ratio: 2.771856e+00	ci left: 1.463457e-08	ci right 3.220599e-06	k: 1	n:1730000
NFE2L2   1730000 perm   1391 sec   (1244 perm/sec)   p_kst 5.780347e-07   p_cons 5.780347e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.120043e-06	k: 0	n:1740000
Cons ci ratio: 2.771856e+00	ci left: 1.455046e-08	ci right 3.202090e-06	k: 1	n:1740000
KS ci ratio: 2.771856e+00	ci left: 1.455046e-08	ci right 3.202090e-06	k: 1	n:1740000
NFE2L2   1740000 perm   1405 sec   (1239 perm/sec)   p_kst 5.747126e-07   p_cons 5.747126e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.107929e-06	k: 0	n:1750000
Cons ci ratio: 2.771856e+00	ci left: 1.446732e-08	ci right 3.183792e-06	k: 1	n:1750000
KS ci ratio: 2.771856e+00	ci left: 1.446732e-08	ci right 3.183792e-06	k: 1	n:1750000
NFE2L2   1750000 perm   1419 sec   (1234 perm/sec)   p_kst 5.714286e-07   p_cons 5.714286e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.095952e-06	k: 0	n:1760000
Cons ci ratio: 2.771856e+00	ci left: 1.438512e-08	ci right 3.165702e-06	k: 1	n:1760000
KS ci ratio: 2.771856e+00	ci left: 1.438512e-08	ci right 3.165702e-06	k: 1	n:1760000
NFE2L2   1760000 perm   1433 sec   (1229 perm/sec)   p_kst 5.681818e-07   p_cons 5.681818e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.084111e-06	k: 0	n:1770000
Cons ci ratio: 2.771856e+00	ci left: 1.430385e-08	ci right 3.147817e-06	k: 1	n:1770000
KS ci ratio: 2.771856e+00	ci left: 1.430385e-08	ci right 3.147817e-06	k: 1	n:1770000
NFE2L2   1770000 perm   1447 sec   (1224 perm/sec)   p_kst 5.649718e-07   p_cons 5.649718e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.072402e-06	k: 0	n:1780000
Cons ci ratio: 2.771856e+00	ci left: 1.422349e-08	ci right 3.130133e-06	k: 1	n:1780000
KS ci ratio: 2.771856e+00	ci left: 1.422349e-08	ci right 3.130133e-06	k: 1	n:1780000
NFE2L2   1780000 perm   1461 sec   (1218 perm/sec)   p_kst 5.617978e-07   p_cons 5.617978e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.060824e-06	k: 0	n:1790000
Cons ci ratio: 2.771856e+00	ci left: 1.414403e-08	ci right 3.112646e-06	k: 1	n:1790000
KS ci ratio: 2.771856e+00	ci left: 1.414403e-08	ci right 3.112646e-06	k: 1	n:1790000
NFE2L2   1790000 perm   1475 sec   (1213 perm/sec)   p_kst 5.586592e-07   p_cons 5.586592e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.049375e-06	k: 0	n:1800000
Cons ci ratio: 2.771856e+00	ci left: 1.406545e-08	ci right 3.095354e-06	k: 1	n:1800000
KS ci ratio: 2.771856e+00	ci left: 1.406545e-08	ci right 3.095354e-06	k: 1	n:1800000
NFE2L2   1800000 perm   1490 sec   (1208 perm/sec)   p_kst 5.555556e-07   p_cons 5.555556e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.038053e-06	k: 0	n:1810000
Cons ci ratio: 2.771856e+00	ci left: 1.398774e-08	ci right 3.078252e-06	k: 1	n:1810000
KS ci ratio: 2.771856e+00	ci left: 1.398774e-08	ci right 3.078252e-06	k: 1	n:1810000
NFE2L2   1810000 perm   1504 sec   (1203 perm/sec)   p_kst 5.524862e-07   p_cons 5.524862e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.026855e-06	k: 0	n:1820000
Cons ci ratio: 2.771856e+00	ci left: 1.391088e-08	ci right 3.061339e-06	k: 1	n:1820000
KS ci ratio: 2.771856e+00	ci left: 1.391088e-08	ci right 3.061339e-06	k: 1	n:1820000
NFE2L2   1820000 perm   1519 sec   (1198 perm/sec)   p_kst 5.494505e-07   p_cons 5.494505e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.015779e-06	k: 0	n:1830000
Cons ci ratio: 2.771856e+00	ci left: 1.383487e-08	ci right 3.044610e-06	k: 1	n:1830000
KS ci ratio: 2.771856e+00	ci left: 1.383487e-08	ci right 3.044610e-06	k: 1	n:1830000
NFE2L2   1830000 perm   1533 sec   (1194 perm/sec)   p_kst 5.464481e-07   p_cons 5.464481e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.004824e-06	k: 0	n:1840000
Cons ci ratio: 2.771856e+00	ci left: 1.375968e-08	ci right 3.028063e-06	k: 1	n:1840000
KS ci ratio: 2.771856e+00	ci left: 1.375968e-08	ci right 3.028063e-06	k: 1	n:1840000
NFE2L2   1840000 perm   1548 sec   (1189 perm/sec)   p_kst 5.434783e-07   p_cons 5.434783e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.993987e-06	k: 0	n:1850000
Cons ci ratio: 2.771856e+00	ci left: 1.368530e-08	ci right 3.011695e-06	k: 1	n:1850000
KS ci ratio: 2.771856e+00	ci left: 1.368530e-08	ci right 3.011695e-06	k: 1	n:1850000
NFE2L2   1850000 perm   1562 sec   (1184 perm/sec)   p_kst 5.405405e-07   p_cons 5.405405e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.983267e-06	k: 0	n:1860000
Cons ci ratio: 2.771856e+00	ci left: 1.361172e-08	ci right 2.995504e-06	k: 1	n:1860000
KS ci ratio: 2.771856e+00	ci left: 1.361172e-08	ci right 2.995504e-06	k: 1	n:1860000
NFE2L2   1860000 perm   1577 sec   (1179 perm/sec)   p_kst 5.376344e-07   p_cons 5.376344e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.972661e-06	k: 0	n:1870000
Cons ci ratio: 2.771856e+00	ci left: 1.353893e-08	ci right 2.979485e-06	k: 1	n:1870000
KS ci ratio: 2.771856e+00	ci left: 1.353893e-08	ci right 2.979485e-06	k: 1	n:1870000
NFE2L2   1870000 perm   1592 sec   (1175 perm/sec)   p_kst 5.347594e-07   p_cons 5.347594e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.962168e-06	k: 0	n:1880000
Cons ci ratio: 2.771856e+00	ci left: 1.346692e-08	ci right 2.963636e-06	k: 1	n:1880000
KS ci ratio: 2.771856e+00	ci left: 1.346692e-08	ci right 2.963636e-06	k: 1	n:1880000
NFE2L2   1880000 perm   1606 sec   (1170 perm/sec)   p_kst 5.319149e-07   p_cons 5.319149e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.951786e-06	k: 0	n:1890000
Cons ci ratio: 2.771856e+00	ci left: 1.339567e-08	ci right 2.947956e-06	k: 1	n:1890000
KS ci ratio: 2.771856e+00	ci left: 1.339567e-08	ci right 2.947956e-06	k: 1	n:1890000
NFE2L2   1890000 perm   1621 sec   (1166 perm/sec)   p_kst 5.291005e-07   p_cons 5.291005e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.941514e-06	k: 0	n:1900000
Cons ci ratio: 2.771856e+00	ci left: 1.332516e-08	ci right 2.932440e-06	k: 1	n:1900000
KS ci ratio: 2.771856e+00	ci left: 1.332516e-08	ci right 2.932440e-06	k: 1	n:1900000
NFE2L2   1900000 perm   1636 sec   (1161 perm/sec)   p_kst 5.263158e-07   p_cons 5.263158e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.931349e-06	k: 0	n:1910000
Cons ci ratio: 2.771856e+00	ci left: 1.325540e-08	ci right 2.917087e-06	k: 1	n:1910000
KS ci ratio: 2.771856e+00	ci left: 1.325540e-08	ci right 2.917087e-06	k: 1	n:1910000
NFE2L2   1910000 perm   1651 sec   (1157 perm/sec)   p_kst 5.235602e-07   p_cons 5.235602e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.921290e-06	k: 0	n:1920000
Cons ci ratio: 2.771856e+00	ci left: 1.318636e-08	ci right 2.901894e-06	k: 1	n:1920000
KS ci ratio: 2.771856e+00	ci left: 1.318636e-08	ci right 2.901894e-06	k: 1	n:1920000
NFE2L2   1920000 perm   1666 sec   (1152 perm/sec)   p_kst 5.208333e-07   p_cons 5.208333e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.911335e-06	k: 0	n:1930000
Cons ci ratio: 2.771856e+00	ci left: 1.311804e-08	ci right 2.886858e-06	k: 1	n:1930000
KS ci ratio: 2.771856e+00	ci left: 1.311804e-08	ci right 2.886858e-06	k: 1	n:1930000
NFE2L2   1930000 perm   1682 sec   (1148 perm/sec)   p_kst 5.181347e-07   p_cons 5.181347e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.901482e-06	k: 0	n:1940000
Cons ci ratio: 2.771856e+00	ci left: 1.305042e-08	ci right 2.871978e-06	k: 1	n:1940000
KS ci ratio: 2.771856e+00	ci left: 1.305042e-08	ci right 2.871978e-06	k: 1	n:1940000
NFE2L2   1940000 perm   1697 sec   (1143 perm/sec)   p_kst 5.154639e-07   p_cons 5.154639e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.891731e-06	k: 0	n:1950000
Cons ci ratio: 2.771856e+00	ci left: 1.298349e-08	ci right 2.857250e-06	k: 1	n:1950000
KS ci ratio: 2.771856e+00	ci left: 1.298349e-08	ci right 2.857250e-06	k: 1	n:1950000
NFE2L2   1950000 perm   1712 sec   (1139 perm/sec)   p_kst 5.128205e-07   p_cons 5.128205e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.882080e-06	k: 0	n:1960000
Cons ci ratio: 2.771856e+00	ci left: 1.291725e-08	ci right 2.842672e-06	k: 1	n:1960000
KS ci ratio: 2.771856e+00	ci left: 1.291725e-08	ci right 2.842672e-06	k: 1	n:1960000
NFE2L2   1960000 perm   1728 sec   (1134 perm/sec)   p_kst 5.102041e-07   p_cons 5.102041e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.872526e-06	k: 0	n:1970000
Cons ci ratio: 2.771856e+00	ci left: 1.285168e-08	ci right 2.828242e-06	k: 1	n:1970000
KS ci ratio: 2.771856e+00	ci left: 1.285168e-08	ci right 2.828242e-06	k: 1	n:1970000
NFE2L2   1970000 perm   1743 sec   (1130 perm/sec)   p_kst 5.076142e-07   p_cons 5.076142e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.863069e-06	k: 0	n:1980000
Cons ci ratio: 2.771856e+00	ci left: 1.278677e-08	ci right 2.813958e-06	k: 1	n:1980000
KS ci ratio: 2.771856e+00	ci left: 1.278677e-08	ci right 2.813958e-06	k: 1	n:1980000
NFE2L2   1980000 perm   1759 sec   (1126 perm/sec)   p_kst 5.050505e-07   p_cons 5.050505e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.853707e-06	k: 0	n:1990000
Cons ci ratio: 2.771856e+00	ci left: 1.272252e-08	ci right 2.799818e-06	k: 1	n:1990000
KS ci ratio: 2.771856e+00	ci left: 1.272252e-08	ci right 2.799818e-06	k: 1	n:1990000
NFE2L2   1990000 perm   1774 sec   (1122 perm/sec)   p_kst 5.025126e-07   p_cons 5.025126e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.844438e-06	k: 0	n:2000000
Cons ci ratio: 2.771857e+00	ci left: 1.265890e-08	ci right 2.785819e-06	k: 1	n:2000000
KS ci ratio: 2.771857e+00	ci left: 1.265890e-08	ci right 2.785819e-06	k: 1	n:2000000
NFE2L2   2000000 perm   1790 sec   (1117 perm/sec)   p_kst 5.000000e-07   p_cons 5.000000e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.835262e-06	k: 0	n:2010000
Cons ci ratio: 2.771857e+00	ci left: 1.259592e-08	ci right 2.771959e-06	k: 1	n:2010000
KS ci ratio: 2.771857e+00	ci left: 1.259592e-08	ci right 2.771959e-06	k: 1	n:2010000
NFE2L2   2010000 perm   1806 sec   (1113 perm/sec)   p_kst 4.975124e-07   p_cons 4.975124e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.826176e-06	k: 0	n:2020000
Cons ci ratio: 2.771857e+00	ci left: 1.253357e-08	ci right 2.758236e-06	k: 1	n:2020000
KS ci ratio: 2.771857e+00	ci left: 1.253357e-08	ci right 2.758236e-06	k: 1	n:2020000
NFE2L2   2020000 perm   1822 sec   (1109 perm/sec)   p_kst 4.950495e-07   p_cons 4.950495e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.817180e-06	k: 0	n:2030000
Cons ci ratio: 2.771857e+00	ci left: 1.247183e-08	ci right 2.744649e-06	k: 1	n:2030000
KS ci ratio: 2.771857e+00	ci left: 1.247183e-08	ci right 2.744649e-06	k: 1	n:2030000
NFE2L2   2030000 perm   1838 sec   (1104 perm/sec)   p_kst 4.926108e-07   p_cons 4.926108e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.808273e-06	k: 0	n:2040000
Cons ci ratio: 2.771857e+00	ci left: 1.241069e-08	ci right 2.731195e-06	k: 1	n:2040000
KS ci ratio: 2.771857e+00	ci left: 1.241069e-08	ci right 2.731195e-06	k: 1	n:2040000
NFE2L2   2040000 perm   1854 sec   (1100 perm/sec)   p_kst 4.901961e-07   p_cons 4.901961e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.799452e-06	k: 0	n:2050000
Cons ci ratio: 2.771857e+00	ci left: 1.235015e-08	ci right 2.717872e-06	k: 1	n:2050000
KS ci ratio: 2.771857e+00	ci left: 1.235015e-08	ci right 2.717872e-06	k: 1	n:2050000
NFE2L2   2050000 perm   1870 sec   (1096 perm/sec)   p_kst 4.878049e-07   p_cons 4.878049e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.790717e-06	k: 0	n:2060000
Cons ci ratio: 2.771857e+00	ci left: 1.229020e-08	ci right 2.704678e-06	k: 1	n:2060000
KS ci ratio: 2.771857e+00	ci left: 1.229020e-08	ci right 2.704678e-06	k: 1	n:2060000
NFE2L2   2060000 perm   1886 sec   (1092 perm/sec)   p_kst 4.854369e-07   p_cons 4.854369e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.782066e-06	k: 0	n:2070000
Cons ci ratio: 2.771857e+00	ci left: 1.223083e-08	ci right 2.691612e-06	k: 1	n:2070000
KS ci ratio: 2.771857e+00	ci left: 1.223083e-08	ci right 2.691612e-06	k: 1	n:2070000
NFE2L2   2070000 perm   1902 sec   (1088 perm/sec)   p_kst 4.830918e-07   p_cons 4.830918e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.773498e-06	k: 0	n:2080000
Cons ci ratio: 2.771857e+00	ci left: 1.217202e-08	ci right 2.678672e-06	k: 1	n:2080000
KS ci ratio: 2.771857e+00	ci left: 1.217202e-08	ci right 2.678672e-06	k: 1	n:2080000
NFE2L2   2080000 perm   1918 sec   (1084 perm/sec)   p_kst 4.807692e-07   p_cons 4.807692e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.765013e-06	k: 0	n:2090000
Cons ci ratio: 2.771857e+00	ci left: 1.211378e-08	ci right 2.665855e-06	k: 1	n:2090000
KS ci ratio: 2.771857e+00	ci left: 1.211378e-08	ci right 2.665855e-06	k: 1	n:2090000
NFE2L2   2090000 perm   1934 sec   (1080 perm/sec)   p_kst 4.784689e-07   p_cons 4.784689e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.756608e-06	k: 0	n:2100000
Cons ci ratio: 2.771857e+00	ci left: 1.205610e-08	ci right 2.653161e-06	k: 1	n:2100000
KS ci ratio: 2.771857e+00	ci left: 1.205610e-08	ci right 2.653161e-06	k: 1	n:2100000
NFE2L2   2100000 perm   1951 sec   (1076 perm/sec)   p_kst 4.761905e-07   p_cons 4.761905e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.748283e-06	k: 0	n:2110000
Cons ci ratio: 2.771857e+00	ci left: 1.199896e-08	ci right 2.640586e-06	k: 1	n:2110000
KS ci ratio: 2.771857e+00	ci left: 1.199896e-08	ci right 2.640586e-06	k: 1	n:2110000
NFE2L2   2110000 perm   1967 sec   (1072 perm/sec)   p_kst 4.739336e-07   p_cons 4.739336e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.740036e-06	k: 0	n:2120000
Cons ci ratio: 2.771857e+00	ci left: 1.194236e-08	ci right 2.628131e-06	k: 1	n:2120000
KS ci ratio: 2.771857e+00	ci left: 1.194236e-08	ci right 2.628131e-06	k: 1	n:2120000
NFE2L2   2120000 perm   1984 sec   (1069 perm/sec)   p_kst 4.716981e-07   p_cons 4.716981e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.731867e-06	k: 0	n:2130000
Cons ci ratio: 2.771857e+00	ci left: 1.188629e-08	ci right 2.615792e-06	k: 1	n:2130000
KS ci ratio: 2.771857e+00	ci left: 1.188629e-08	ci right 2.615792e-06	k: 1	n:2130000
NFE2L2   2130000 perm   2000 sec   (1065 perm/sec)   p_kst 4.694836e-07   p_cons 4.694836e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.723774e-06	k: 0	n:2140000
Cons ci ratio: 2.771857e+00	ci left: 1.183075e-08	ci right 2.603569e-06	k: 1	n:2140000
KS ci ratio: 2.771857e+00	ci left: 1.183075e-08	ci right 2.603569e-06	k: 1	n:2140000
NFE2L2   2140000 perm   2017 sec   (1061 perm/sec)   p_kst 4.672897e-07   p_cons 4.672897e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.715756e-06	k: 0	n:2150000
Cons ci ratio: 2.771857e+00	ci left: 1.177572e-08	ci right 2.591459e-06	k: 1	n:2150000
KS ci ratio: 2.771857e+00	ci left: 1.177572e-08	ci right 2.591459e-06	k: 1	n:2150000
NFE2L2   2150000 perm   2034 sec   (1057 perm/sec)   p_kst 4.651163e-07   p_cons 4.651163e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.707813e-06	k: 0	n:2160000
Cons ci ratio: 2.771857e+00	ci left: 1.172121e-08	ci right 2.579462e-06	k: 1	n:2160000
KS ci ratio: 2.771857e+00	ci left: 1.172121e-08	ci right 2.579462e-06	k: 1	n:2160000
NFE2L2   2160000 perm   2051 sec   (1053 perm/sec)   p_kst 4.629630e-07   p_cons 4.629630e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.699943e-06	k: 0	n:2170000
Cons ci ratio: 2.771857e+00	ci left: 1.166719e-08	ci right 2.567575e-06	k: 1	n:2170000
KS ci ratio: 2.771857e+00	ci left: 1.166719e-08	ci right 2.567575e-06	k: 1	n:2170000
NFE2L2   2170000 perm   2068 sec   (1049 perm/sec)   p_kst 4.608295e-07   p_cons 4.608295e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.692145e-06	k: 0	n:2180000
Cons ci ratio: 2.771857e+00	ci left: 1.161367e-08	ci right 2.555797e-06	k: 1	n:2180000
KS ci ratio: 2.771857e+00	ci left: 1.161367e-08	ci right 2.555797e-06	k: 1	n:2180000
NFE2L2   2180000 perm   2085 sec   (1046 perm/sec)   p_kst 4.587156e-07   p_cons 4.587156e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.684418e-06	k: 0	n:2190000
Cons ci ratio: 2.771857e+00	ci left: 1.156064e-08	ci right 2.544127e-06	k: 1	n:2190000
KS ci ratio: 2.771857e+00	ci left: 1.156064e-08	ci right 2.544127e-06	k: 1	n:2190000
NFE2L2   2190000 perm   2102 sec   (1042 perm/sec)   p_kst 4.566210e-07   p_cons 4.566210e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.676762e-06	k: 0	n:2200000
Cons ci ratio: 2.771857e+00	ci left: 1.150809e-08	ci right 2.532563e-06	k: 1	n:2200000
KS ci ratio: 2.771857e+00	ci left: 1.150809e-08	ci right 2.532563e-06	k: 1	n:2200000
NFE2L2   2200000 perm   2119 sec   (1038 perm/sec)   p_kst 4.545455e-07   p_cons 4.545455e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.669175e-06	k: 0	n:2210000
Cons ci ratio: 2.771857e+00	ci left: 1.145602e-08	ci right 2.521103e-06	k: 1	n:2210000
KS ci ratio: 2.771857e+00	ci left: 1.145602e-08	ci right 2.521103e-06	k: 1	n:2210000
NFE2L2   2210000 perm   2136 sec   (1035 perm/sec)   p_kst 4.524887e-07   p_cons 4.524887e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.661656e-06	k: 0	n:2220000
Cons ci ratio: 2.771857e+00	ci left: 1.140442e-08	ci right 2.509747e-06	k: 1	n:2220000
KS ci ratio: 2.771857e+00	ci left: 1.140442e-08	ci right 2.509747e-06	k: 1	n:2220000
NFE2L2   2220000 perm   2153 sec   (1031 perm/sec)   p_kst 4.504505e-07   p_cons 4.504505e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.654205e-06	k: 0	n:2230000
Cons ci ratio: 2.771857e+00	ci left: 1.135328e-08	ci right 2.498492e-06	k: 1	n:2230000
KS ci ratio: 2.771857e+00	ci left: 1.135328e-08	ci right 2.498492e-06	k: 1	n:2230000
NFE2L2   2230000 perm   2170 sec   (1028 perm/sec)   p_kst 4.484305e-07   p_cons 4.484305e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.646820e-06	k: 0	n:2240000
Cons ci ratio: 2.771857e+00	ci left: 1.130259e-08	ci right 2.487338e-06	k: 1	n:2240000
KS ci ratio: 2.771857e+00	ci left: 1.130259e-08	ci right 2.487338e-06	k: 1	n:2240000
NFE2L2   2240000 perm   2188 sec   (1024 perm/sec)   p_kst 4.464286e-07   p_cons 4.464286e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.639501e-06	k: 0	n:2250000
Cons ci ratio: 2.771857e+00	ci left: 1.125236e-08	ci right 2.476283e-06	k: 1	n:2250000
KS ci ratio: 2.771857e+00	ci left: 1.125236e-08	ci right 2.476283e-06	k: 1	n:2250000
NFE2L2   2250000 perm   2205 sec   (1020 perm/sec)   p_kst 4.444444e-07   p_cons 4.444444e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.632246e-06	k: 0	n:2260000
Cons ci ratio: 2.771857e+00	ci left: 1.120257e-08	ci right 2.465326e-06	k: 1	n:2260000
KS ci ratio: 2.771857e+00	ci left: 1.120257e-08	ci right 2.465326e-06	k: 1	n:2260000
NFE2L2   2260000 perm   2223 sec   (1017 perm/sec)   p_kst 4.424779e-07   p_cons 4.424779e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.625056e-06	k: 0	n:2270000
Cons ci ratio: 2.771857e+00	ci left: 1.115322e-08	ci right 2.454466e-06	k: 1	n:2270000
KS ci ratio: 2.771857e+00	ci left: 1.115322e-08	ci right 2.454466e-06	k: 1	n:2270000
NFE2L2   2270000 perm   2240 sec   (1013 perm/sec)   p_kst 4.405286e-07   p_cons 4.405286e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.617928e-06	k: 0	n:2280000
Cons ci ratio: 2.771857e+00	ci left: 1.110430e-08	ci right 2.443701e-06	k: 1	n:2280000
KS ci ratio: 2.771857e+00	ci left: 1.110430e-08	ci right 2.443701e-06	k: 1	n:2280000
NFE2L2   2280000 perm   2258 sec   (1010 perm/sec)   p_kst 4.385965e-07   p_cons 4.385965e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.610863e-06	k: 0	n:2290000
Cons ci ratio: 2.771857e+00	ci left: 1.105581e-08	ci right 2.433030e-06	k: 1	n:2290000
KS ci ratio: 2.771857e+00	ci left: 1.105581e-08	ci right 2.433030e-06	k: 1	n:2290000
NFE2L2   2290000 perm   2276 sec   (1006 perm/sec)   p_kst 4.366812e-07   p_cons 4.366812e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.603859e-06	k: 0	n:2300000
Cons ci ratio: 2.771857e+00	ci left: 1.100774e-08	ci right 2.422451e-06	k: 1	n:2300000
KS ci ratio: 2.771857e+00	ci left: 1.100774e-08	ci right 2.422451e-06	k: 1	n:2300000
NFE2L2   2300000 perm   2293 sec   (1003 perm/sec)   p_kst 4.347826e-07   p_cons 4.347826e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.596916e-06	k: 0	n:2310000
Cons ci ratio: 2.771857e+00	ci left: 1.096009e-08	ci right 2.411964e-06	k: 1	n:2310000
KS ci ratio: 2.771857e+00	ci left: 1.096009e-08	ci right 2.411964e-06	k: 1	n:2310000
NFE2L2   2310000 perm   2311 sec   (1000 perm/sec)   p_kst 4.329004e-07   p_cons 4.329004e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.590033e-06	k: 0	n:2320000
Cons ci ratio: 2.771857e+00	ci left: 1.091285e-08	ci right 2.401568e-06	k: 1	n:2320000
KS ci ratio: 2.771857e+00	ci left: 1.091285e-08	ci right 2.401568e-06	k: 1	n:2320000
NFE2L2   2320000 perm   2329 sec   (996 perm/sec)   p_kst 4.310345e-07   p_cons 4.310345e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.583209e-06	k: 0	n:2330000
Cons ci ratio: 2.771857e+00	ci left: 1.086601e-08	ci right 2.391261e-06	k: 1	n:2330000
KS ci ratio: 2.771857e+00	ci left: 1.086601e-08	ci right 2.391261e-06	k: 1	n:2330000
NFE2L2   2330000 perm   2347 sec   (993 perm/sec)   p_kst 4.291845e-07   p_cons 4.291845e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.576443e-06	k: 0	n:2340000
Cons ci ratio: 2.771857e+00	ci left: 1.081958e-08	ci right 2.381042e-06	k: 1	n:2340000
KS ci ratio: 2.771857e+00	ci left: 1.081958e-08	ci right 2.381042e-06	k: 1	n:2340000
NFE2L2   2340000 perm   2365 sec   (990 perm/sec)   p_kst 4.273504e-07   p_cons 4.273504e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.569735e-06	k: 0	n:2350000
Cons ci ratio: 2.771857e+00	ci left: 1.077354e-08	ci right 2.370910e-06	k: 1	n:2350000
KS ci ratio: 2.771857e+00	ci left: 1.077354e-08	ci right 2.370910e-06	k: 1	n:2350000
NFE2L2   2350000 perm   2383 sec   (986 perm/sec)   p_kst 4.255319e-07   p_cons 4.255319e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.563083e-06	k: 0	n:2360000
Cons ci ratio: 2.771857e+00	ci left: 1.072788e-08	ci right 2.360864e-06	k: 1	n:2360000
KS ci ratio: 2.771857e+00	ci left: 1.072788e-08	ci right 2.360864e-06	k: 1	n:2360000
NFE2L2   2360000 perm   2401 sec   (983 perm/sec)   p_kst 4.237288e-07   p_cons 4.237288e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.556488e-06	k: 0	n:2370000
Cons ci ratio: 2.771857e+00	ci left: 1.068262e-08	ci right 2.350902e-06	k: 1	n:2370000
KS ci ratio: 2.771857e+00	ci left: 1.068262e-08	ci right 2.350902e-06	k: 1	n:2370000
NFE2L2   2370000 perm   2419 sec   (980 perm/sec)   p_kst 4.219409e-07   p_cons 4.219409e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.549948e-06	k: 0	n:2380000
Cons ci ratio: 2.771857e+00	ci left: 1.063773e-08	ci right 2.341024e-06	k: 1	n:2380000
KS ci ratio: 2.771857e+00	ci left: 1.063773e-08	ci right 2.341024e-06	k: 1	n:2380000
NFE2L2   2380000 perm   2437 sec   (977 perm/sec)   p_kst 4.201681e-07   p_cons 4.201681e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.543463e-06	k: 0	n:2390000
Cons ci ratio: 2.771857e+00	ci left: 1.059323e-08	ci right 2.331229e-06	k: 1	n:2390000
KS ci ratio: 2.771857e+00	ci left: 1.059323e-08	ci right 2.331229e-06	k: 1	n:2390000
NFE2L2   2390000 perm   2455 sec   (973 perm/sec)   p_kst 4.184100e-07   p_cons 4.184100e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.537032e-06	k: 0	n:2400000
Cons ci ratio: 2.771857e+00	ci left: 1.054909e-08	ci right 2.321516e-06	k: 1	n:2400000
KS ci ratio: 2.771857e+00	ci left: 1.054909e-08	ci right 2.321516e-06	k: 1	n:2400000
NFE2L2   2400000 perm   2474 sec   (970 perm/sec)   p_kst 4.166667e-07   p_cons 4.166667e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.530654e-06	k: 0	n:2410000
Cons ci ratio: 2.771857e+00	ci left: 1.050531e-08	ci right 2.311883e-06	k: 1	n:2410000
KS ci ratio: 2.771857e+00	ci left: 1.050531e-08	ci right 2.311883e-06	k: 1	n:2410000
NFE2L2   2410000 perm   2492 sec   (967 perm/sec)   p_kst 4.149378e-07   p_cons 4.149378e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.524329e-06	k: 0	n:2420000
Cons ci ratio: 2.771857e+00	ci left: 1.046190e-08	ci right 2.302330e-06	k: 1	n:2420000
KS ci ratio: 2.771857e+00	ci left: 1.046190e-08	ci right 2.302330e-06	k: 1	n:2420000
NFE2L2   2420000 perm   2511 sec   (964 perm/sec)   p_kst 4.132231e-07   p_cons 4.132231e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.518056e-06	k: 0	n:2430000
Cons ci ratio: 2.771857e+00	ci left: 1.041885e-08	ci right 2.292855e-06	k: 1	n:2430000
KS ci ratio: 2.771857e+00	ci left: 1.041885e-08	ci right 2.292855e-06	k: 1	n:2430000
NFE2L2   2430000 perm   2529 sec   (961 perm/sec)   p_kst 4.115226e-07   p_cons 4.115226e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.511835e-06	k: 0	n:2440000
Cons ci ratio: 2.771857e+00	ci left: 1.037615e-08	ci right 2.283458e-06	k: 1	n:2440000
KS ci ratio: 2.771857e+00	ci left: 1.037615e-08	ci right 2.283458e-06	k: 1	n:2440000
NFE2L2   2440000 perm   2548 sec   (958 perm/sec)   p_kst 4.098361e-07   p_cons 4.098361e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.505664e-06	k: 0	n:2450000
Cons ci ratio: 2.771857e+00	ci left: 1.033380e-08	ci right 2.274138e-06	k: 1	n:2450000
KS ci ratio: 2.771857e+00	ci left: 1.033380e-08	ci right 2.274138e-06	k: 1	n:2450000
NFE2L2   2450000 perm   2567 sec   (955 perm/sec)   p_kst 4.081633e-07   p_cons 4.081633e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.499543e-06	k: 0	n:2460000
Cons ci ratio: 2.771857e+00	ci left: 1.029179e-08	ci right 2.264894e-06	k: 1	n:2460000
KS ci ratio: 2.771857e+00	ci left: 1.029179e-08	ci right 2.264894e-06	k: 1	n:2460000
NFE2L2   2460000 perm   2585 sec   (952 perm/sec)   p_kst 4.065041e-07   p_cons 4.065041e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.493472e-06	k: 0	n:2470000
Cons ci ratio: 2.771857e+00	ci left: 1.025012e-08	ci right 2.255724e-06	k: 1	n:2470000
KS ci ratio: 2.771857e+00	ci left: 1.025012e-08	ci right 2.255724e-06	k: 1	n:2470000
NFE2L2   2470000 perm   2604 sec   (949 perm/sec)   p_kst 4.048583e-07   p_cons 4.048583e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.487450e-06	k: 0	n:2480000
Cons ci ratio: 2.771857e+00	ci left: 1.020879e-08	ci right 2.246628e-06	k: 1	n:2480000
KS ci ratio: 2.771857e+00	ci left: 1.020879e-08	ci right 2.246628e-06	k: 1	n:2480000
NFE2L2   2480000 perm   2623 sec   (946 perm/sec)   p_kst 4.032258e-07   p_cons 4.032258e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.481477e-06	k: 0	n:2490000
Cons ci ratio: 2.771857e+00	ci left: 1.016779e-08	ci right 2.237606e-06	k: 1	n:2490000
KS ci ratio: 2.771857e+00	ci left: 1.016779e-08	ci right 2.237606e-06	k: 1	n:2490000
NFE2L2   2490000 perm   2642 sec   (942 perm/sec)   p_kst 4.016064e-07   p_cons 4.016064e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.475551e-06	k: 0	n:2500000
Cons ci ratio: 2.771857e+00	ci left: 1.012712e-08	ci right 2.228655e-06	k: 1	n:2500000
KS ci ratio: 2.771857e+00	ci left: 1.012712e-08	ci right 2.228655e-06	k: 1	n:2500000
NFE2L2   2500000 perm   2661 sec   (939 perm/sec)   p_kst 4.000000e-07   p_cons 4.000000e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.469672e-06	k: 0	n:2510000
Cons ci ratio: 2.771857e+00	ci left: 1.008678e-08	ci right 2.219776e-06	k: 1	n:2510000
KS ci ratio: 2.771857e+00	ci left: 1.008678e-08	ci right 2.219776e-06	k: 1	n:2510000
NFE2L2   2510000 perm   2680 sec   (936 perm/sec)   p_kst 3.984064e-07   p_cons 3.984064e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.463840e-06	k: 0	n:2520000
Cons ci ratio: 2.771857e+00	ci left: 1.004675e-08	ci right 2.210968e-06	k: 1	n:2520000
KS ci ratio: 2.771857e+00	ci left: 1.004675e-08	ci right 2.210968e-06	k: 1	n:2520000
NFE2L2   2520000 perm   2700 sec   (933 perm/sec)   p_kst 3.968254e-07   p_cons 3.968254e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.458054e-06	k: 0	n:2530000
Cons ci ratio: 2.771857e+00	ci left: 1.000704e-08	ci right 2.202229e-06	k: 1	n:2530000
KS ci ratio: 2.771857e+00	ci left: 1.000704e-08	ci right 2.202229e-06	k: 1	n:2530000
NFE2L2   2530000 perm   2719 sec   (931 perm/sec)   p_kst 3.952569e-07   p_cons 3.952569e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.452314e-06	k: 0	n:2540000
Cons ci ratio: 2.771857e+00	ci left: 9.967641e-09	ci right 2.193558e-06	k: 1	n:2540000
KS ci ratio: 2.771857e+00	ci left: 9.967641e-09	ci right 2.193558e-06	k: 1	n:2540000
NFE2L2   2540000 perm   2738 sec   (928 perm/sec)   p_kst 3.937008e-07   p_cons 3.937008e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.446618e-06	k: 0	n:2550000
Cons ci ratio: 2.771857e+00	ci left: 9.928552e-09	ci right 2.184956e-06	k: 1	n:2550000
KS ci ratio: 2.771857e+00	ci left: 9.928552e-09	ci right 2.184956e-06	k: 1	n:2550000
NFE2L2   2550000 perm   2758 sec   (925 perm/sec)   p_kst 3.921569e-07   p_cons 3.921569e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.440968e-06	k: 0	n:2560000
Cons ci ratio: 2.771857e+00	ci left: 9.889769e-09	ci right 2.176421e-06	k: 1	n:2560000
KS ci ratio: 2.771857e+00	ci left: 9.889769e-09	ci right 2.176421e-06	k: 1	n:2560000
NFE2L2   2560000 perm   2777 sec   (922 perm/sec)   p_kst 3.906250e-07   p_cons 3.906250e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.435361e-06	k: 0	n:2570000
Cons ci ratio: 2.771857e+00	ci left: 9.851287e-09	ci right 2.167953e-06	k: 1	n:2570000
KS ci ratio: 2.771857e+00	ci left: 9.851287e-09	ci right 2.167953e-06	k: 1	n:2570000
NFE2L2   2570000 perm   2797 sec   (919 perm/sec)   p_kst 3.891051e-07   p_cons 3.891051e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.429797e-06	k: 0	n:2580000
Cons ci ratio: 2.771857e+00	ci left: 9.813104e-09	ci right 2.159550e-06	k: 1	n:2580000
KS ci ratio: 2.771857e+00	ci left: 9.813104e-09	ci right 2.159550e-06	k: 1	n:2580000
NFE2L2   2580000 perm   2817 sec   (916 perm/sec)   p_kst 3.875969e-07   p_cons 3.875969e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.424277e-06	k: 0	n:2590000
Cons ci ratio: 2.771857e+00	ci left: 9.775216e-09	ci right 2.151212e-06	k: 1	n:2590000
KS ci ratio: 2.771857e+00	ci left: 9.775216e-09	ci right 2.151212e-06	k: 1	n:2590000
NFE2L2   2590000 perm   2837 sec   (913 perm/sec)   p_kst 3.861004e-07   p_cons 3.861004e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.418799e-06	k: 0	n:2600000
Cons ci ratio: 2.771857e+00	ci left: 9.737618e-09	ci right 2.142938e-06	k: 1	n:2600000
KS ci ratio: 2.771857e+00	ci left: 9.737618e-09	ci right 2.142938e-06	k: 1	n:2600000
NFE2L2   2600000 perm   2857 sec   (910 perm/sec)   p_kst 3.846154e-07   p_cons 3.846154e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.413363e-06	k: 0	n:2610000
Cons ci ratio: 2.771857e+00	ci left: 9.700310e-09	ci right 2.134727e-06	k: 1	n:2610000
KS ci ratio: 2.771857e+00	ci left: 9.700310e-09	ci right 2.134727e-06	k: 1	n:2610000
NFE2L2   2610000 perm   2876 sec   (908 perm/sec)   p_kst 3.831418e-07   p_cons 3.831418e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.407968e-06	k: 0	n:2620000
Cons ci ratio: 2.771857e+00	ci left: 9.663285e-09	ci right 2.126580e-06	k: 1	n:2620000
KS ci ratio: 2.771857e+00	ci left: 9.663285e-09	ci right 2.126580e-06	k: 1	n:2620000
NFE2L2   2620000 perm   2896 sec   (905 perm/sec)   p_kst 3.816794e-07   p_cons 3.816794e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.402615e-06	k: 0	n:2630000
Cons ci ratio: 2.771857e+00	ci left: 9.626543e-09	ci right 2.118494e-06	k: 1	n:2630000
KS ci ratio: 2.771857e+00	ci left: 9.626543e-09	ci right 2.118494e-06	k: 1	n:2630000
NFE2L2   2630000 perm   2916 sec   (902 perm/sec)   p_kst 3.802281e-07   p_cons 3.802281e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.397302e-06	k: 0	n:2640000
Cons ci ratio: 2.771857e+00	ci left: 9.590079e-09	ci right 2.110469e-06	k: 1	n:2640000
KS ci ratio: 2.771857e+00	ci left: 9.590079e-09	ci right 2.110469e-06	k: 1	n:2640000
NFE2L2   2640000 perm   2936 sec   (899 perm/sec)   p_kst 3.787879e-07   p_cons 3.787879e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.392029e-06	k: 0	n:2650000
Cons ci ratio: 2.771857e+00	ci left: 9.553890e-09	ci right 2.102505e-06	k: 1	n:2650000
KS ci ratio: 2.771857e+00	ci left: 9.553890e-09	ci right 2.102505e-06	k: 1	n:2650000
NFE2L2   2650000 perm   2956 sec   (896 perm/sec)   p_kst 3.773585e-07   p_cons 3.773585e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.386796e-06	k: 0	n:2660000
Cons ci ratio: 2.771857e+00	ci left: 9.517973e-09	ci right 2.094601e-06	k: 1	n:2660000
KS ci ratio: 2.771857e+00	ci left: 9.517973e-09	ci right 2.094601e-06	k: 1	n:2660000
NFE2L2   2660000 perm   2976 sec   (894 perm/sec)   p_kst 3.759398e-07   p_cons 3.759398e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.381602e-06	k: 0	n:2670000
Cons ci ratio: 2.771857e+00	ci left: 9.482325e-09	ci right 2.086756e-06	k: 1	n:2670000
KS ci ratio: 2.771857e+00	ci left: 9.482325e-09	ci right 2.086756e-06	k: 1	n:2670000
NFE2L2   2670000 perm   2997 sec   (891 perm/sec)   p_kst 3.745318e-07   p_cons 3.745318e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.376447e-06	k: 0	n:2680000
Cons ci ratio: 2.771857e+00	ci left: 9.446943e-09	ci right 2.078970e-06	k: 1	n:2680000
KS ci ratio: 2.771857e+00	ci left: 9.446943e-09	ci right 2.078970e-06	k: 1	n:2680000
NFE2L2   2680000 perm   3017 sec   (888 perm/sec)   p_kst 3.731343e-07   p_cons 3.731343e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.371330e-06	k: 0	n:2690000
Cons ci ratio: 2.771857e+00	ci left: 9.411825e-09	ci right 2.071241e-06	k: 1	n:2690000
KS ci ratio: 2.771857e+00	ci left: 9.411825e-09	ci right 2.071241e-06	k: 1	n:2690000
NFE2L2   2690000 perm   3038 sec   (886 perm/sec)   p_kst 3.717472e-07   p_cons 3.717472e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.366251e-06	k: 0	n:2700000
Cons ci ratio: 2.771857e+00	ci left: 9.376966e-09	ci right 2.063570e-06	k: 1	n:2700000
KS ci ratio: 2.771857e+00	ci left: 9.376966e-09	ci right 2.063570e-06	k: 1	n:2700000
NFE2L2   2700000 perm   3058 sec   (883 perm/sec)   p_kst 3.703704e-07   p_cons 3.703704e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.361209e-06	k: 0	n:2710000
Cons ci ratio: 2.771857e+00	ci left: 9.342365e-09	ci right 2.055955e-06	k: 1	n:2710000
KS ci ratio: 2.771857e+00	ci left: 9.342365e-09	ci right 2.055955e-06	k: 1	n:2710000
NFE2L2   2710000 perm   3079 sec   (880 perm/sec)   p_kst 3.690037e-07   p_cons 3.690037e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.356205e-06	k: 0	n:2720000
Cons ci ratio: 2.771857e+00	ci left: 9.308018e-09	ci right 2.048397e-06	k: 1	n:2720000
KS ci ratio: 2.771857e+00	ci left: 9.308018e-09	ci right 2.048397e-06	k: 1	n:2720000
NFE2L2   2720000 perm   3099 sec   (878 perm/sec)   p_kst 3.676471e-07   p_cons 3.676471e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.351237e-06	k: 0	n:2730000
Cons ci ratio: 2.771857e+00	ci left: 9.273922e-09	ci right 2.040893e-06	k: 1	n:2730000
KS ci ratio: 2.771857e+00	ci left: 9.273922e-09	ci right 2.040893e-06	k: 1	n:2730000
NFE2L2   2730000 perm   3120 sec   (875 perm/sec)   p_kst 3.663004e-07   p_cons 3.663004e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.346305e-06	k: 0	n:2740000
Cons ci ratio: 2.771857e+00	ci left: 9.240076e-09	ci right 2.033445e-06	k: 1	n:2740000
KS ci ratio: 2.771857e+00	ci left: 9.240076e-09	ci right 2.033445e-06	k: 1	n:2740000
NFE2L2   2740000 perm   3141 sec   (872 perm/sec)   p_kst 3.649635e-07   p_cons 3.649635e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.341410e-06	k: 0	n:2750000
Cons ci ratio: 2.771857e+00	ci left: 9.206476e-09	ci right 2.026050e-06	k: 1	n:2750000
KS ci ratio: 2.771857e+00	ci left: 9.206476e-09	ci right 2.026050e-06	k: 1	n:2750000
NFE2L2   2750000 perm   3162 sec   (870 perm/sec)   p_kst 3.636364e-07   p_cons 3.636364e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.336550e-06	k: 0	n:2760000
Cons ci ratio: 2.771857e+00	ci left: 9.173119e-09	ci right 2.018710e-06	k: 1	n:2760000
KS ci ratio: 2.771857e+00	ci left: 9.173119e-09	ci right 2.018710e-06	k: 1	n:2760000
NFE2L2   2760000 perm   3183 sec   (867 perm/sec)   p_kst 3.623188e-07   p_cons 3.623188e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.331725e-06	k: 0	n:2770000
Cons ci ratio: 2.771857e+00	ci left: 9.140003e-09	ci right 2.011422e-06	k: 1	n:2770000
KS ci ratio: 2.771857e+00	ci left: 9.140003e-09	ci right 2.011422e-06	k: 1	n:2770000
NFE2L2   2770000 perm   3204 sec   (864 perm/sec)   p_kst 3.610108e-07   p_cons 3.610108e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.326934e-06	k: 0	n:2780000
Cons ci ratio: 2.771857e+00	ci left: 9.107125e-09	ci right 2.004187e-06	k: 1	n:2780000
KS ci ratio: 2.771857e+00	ci left: 9.107125e-09	ci right 2.004187e-06	k: 1	n:2780000
NFE2L2   2780000 perm   3225 sec   (862 perm/sec)   p_kst 3.597122e-07   p_cons 3.597122e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.322178e-06	k: 0	n:2790000
Cons ci ratio: 2.771857e+00	ci left: 9.074483e-09	ci right 1.997003e-06	k: 1	n:2790000
KS ci ratio: 2.771857e+00	ci left: 9.074483e-09	ci right 1.997003e-06	k: 1	n:2790000
NFE2L2   2790000 perm   3247 sec   (859 perm/sec)   p_kst 3.584229e-07   p_cons 3.584229e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.317456e-06	k: 0	n:2800000
Cons ci ratio: 2.771857e+00	ci left: 9.042074e-09	ci right 1.989871e-06	k: 1	n:2800000
KS ci ratio: 2.771857e+00	ci left: 9.042074e-09	ci right 1.989871e-06	k: 1	n:2800000
NFE2L2   2800000 perm   3268 sec   (857 perm/sec)   p_kst 3.571429e-07   p_cons 3.571429e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.312768e-06	k: 0	n:2810000
Cons ci ratio: 2.771857e+00	ci left: 9.009896e-09	ci right 1.982790e-06	k: 1	n:2810000
KS ci ratio: 2.771857e+00	ci left: 9.009896e-09	ci right 1.982790e-06	k: 1	n:2810000
NFE2L2   2810000 perm   3289 sec   (854 perm/sec)   p_kst 3.558719e-07   p_cons 3.558719e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.308112e-06	k: 0	n:2820000
Cons ci ratio: 2.771857e+00	ci left: 8.977946e-09	ci right 1.975758e-06	k: 1	n:2820000
KS ci ratio: 2.771857e+00	ci left: 8.977946e-09	ci right 1.975758e-06	k: 1	n:2820000
NFE2L2   2820000 perm   3310 sec   (852 perm/sec)   p_kst 3.546099e-07   p_cons 3.546099e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.303490e-06	k: 0	n:2830000
Cons ci ratio: 2.771857e+00	ci left: 8.946222e-09	ci right 1.968777e-06	k: 1	n:2830000
KS ci ratio: 2.771857e+00	ci left: 8.946222e-09	ci right 1.968777e-06	k: 1	n:2830000
NFE2L2   2830000 perm   3332 sec   (849 perm/sec)   p_kst 3.533569e-07   p_cons 3.533569e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.298900e-06	k: 0	n:2840000
Cons ci ratio: 2.771857e+00	ci left: 8.914721e-09	ci right 1.961845e-06	k: 1	n:2840000
KS ci ratio: 2.771857e+00	ci left: 8.914721e-09	ci right 1.961845e-06	k: 1	n:2840000
NFE2L2   2840000 perm   3353 sec   (847 perm/sec)   p_kst 3.521127e-07   p_cons 3.521127e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.294343e-06	k: 0	n:2850000
Cons ci ratio: 2.771857e+00	ci left: 8.883441e-09	ci right 1.954961e-06	k: 1	n:2850000
KS ci ratio: 2.771857e+00	ci left: 8.883441e-09	ci right 1.954961e-06	k: 1	n:2850000
NFE2L2   2850000 perm   3375 sec   (844 perm/sec)   p_kst 3.508772e-07   p_cons 3.508772e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.289817e-06	k: 0	n:2860000
Cons ci ratio: 2.771857e+00	ci left: 8.852380e-09	ci right 1.948126e-06	k: 1	n:2860000
KS ci ratio: 2.771857e+00	ci left: 8.852380e-09	ci right 1.948126e-06	k: 1	n:2860000
NFE2L2   2860000 perm   3397 sec   (842 perm/sec)   p_kst 3.496503e-07   p_cons 3.496503e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.285323e-06	k: 0	n:2870000
Cons ci ratio: 2.771857e+00	ci left: 8.821536e-09	ci right 1.941338e-06	k: 1	n:2870000
KS ci ratio: 2.771857e+00	ci left: 8.821536e-09	ci right 1.941338e-06	k: 1	n:2870000
NFE2L2   2870000 perm   3418 sec   (840 perm/sec)   p_kst 3.484321e-07   p_cons 3.484321e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.280860e-06	k: 0	n:2880000
Cons ci ratio: 2.771857e+00	ci left: 8.790905e-09	ci right 1.934597e-06	k: 1	n:2880000
KS ci ratio: 2.771857e+00	ci left: 8.790905e-09	ci right 1.934597e-06	k: 1	n:2880000
NFE2L2   2880000 perm   3440 sec   (837 perm/sec)   p_kst 3.472222e-07   p_cons 3.472222e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.276428e-06	k: 0	n:2890000
Cons ci ratio: 2.771857e+00	ci left: 8.760487e-09	ci right 1.927903e-06	k: 1	n:2890000
KS ci ratio: 2.771857e+00	ci left: 8.760487e-09	ci right 1.927903e-06	k: 1	n:2890000
NFE2L2   2890000 perm   3462 sec   (835 perm/sec)   p_kst 3.460208e-07   p_cons 3.460208e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.272027e-06	k: 0	n:2900000
Cons ci ratio: 2.771857e+00	ci left: 8.730279e-09	ci right 1.921255e-06	k: 1	n:2900000
KS ci ratio: 2.771857e+00	ci left: 8.730279e-09	ci right 1.921255e-06	k: 1	n:2900000
NFE2L2   2900000 perm   3484 sec   (832 perm/sec)   p_kst 3.448276e-07   p_cons 3.448276e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.267655e-06	k: 0	n:2910000
Cons ci ratio: 2.771857e+00	ci left: 8.700278e-09	ci right 1.914653e-06	k: 1	n:2910000
KS ci ratio: 2.771857e+00	ci left: 8.700278e-09	ci right 1.914653e-06	k: 1	n:2910000
NFE2L2   2910000 perm   3506 sec   (830 perm/sec)   p_kst 3.436426e-07   p_cons 3.436426e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.263314e-06	k: 0	n:2920000
Cons ci ratio: 2.771857e+00	ci left: 8.670482e-09	ci right 1.908096e-06	k: 1	n:2920000
KS ci ratio: 2.771857e+00	ci left: 8.670482e-09	ci right 1.908096e-06	k: 1	n:2920000
NFE2L2   2920000 perm   3528 sec   (828 perm/sec)   p_kst 3.424658e-07   p_cons 3.424658e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.259002e-06	k: 0	n:2930000
Cons ci ratio: 2.771857e+00	ci left: 8.640890e-09	ci right 1.901583e-06	k: 1	n:2930000
KS ci ratio: 2.771857e+00	ci left: 8.640890e-09	ci right 1.901583e-06	k: 1	n:2930000
NFE2L2   2930000 perm   3551 sec   (825 perm/sec)   p_kst 3.412969e-07   p_cons 3.412969e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.254720e-06	k: 0	n:2940000
Cons ci ratio: 2.771857e+00	ci left: 8.611499e-09	ci right 1.895115e-06	k: 1	n:2940000
KS ci ratio: 2.771857e+00	ci left: 8.611499e-09	ci right 1.895115e-06	k: 1	n:2940000
NFE2L2   2940000 perm   3573 sec   (823 perm/sec)   p_kst 3.401361e-07   p_cons 3.401361e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.250467e-06	k: 0	n:2950000
Cons ci ratio: 2.771857e+00	ci left: 8.582308e-09	ci right 1.888691e-06	k: 1	n:2950000
KS ci ratio: 2.771857e+00	ci left: 8.582308e-09	ci right 1.888691e-06	k: 1	n:2950000
NFE2L2   2950000 perm   3595 sec   (821 perm/sec)   p_kst 3.389831e-07   p_cons 3.389831e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.246242e-06	k: 0	n:2960000
Cons ci ratio: 2.771857e+00	ci left: 8.553313e-09	ci right 1.882311e-06	k: 1	n:2960000
KS ci ratio: 2.771857e+00	ci left: 8.553313e-09	ci right 1.882311e-06	k: 1	n:2960000
NFE2L2   2960000 perm   3618 sec   (818 perm/sec)   p_kst 3.378378e-07   p_cons 3.378378e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.242046e-06	k: 0	n:2970000
Cons ci ratio: 2.771857e+00	ci left: 8.524514e-09	ci right 1.875973e-06	k: 1	n:2970000
KS ci ratio: 2.771857e+00	ci left: 8.524514e-09	ci right 1.875973e-06	k: 1	n:2970000
NFE2L2   2970000 perm   3640 sec   (816 perm/sec)   p_kst 3.367003e-07   p_cons 3.367003e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.237878e-06	k: 0	n:2980000
Cons ci ratio: 2.771857e+00	ci left: 8.495909e-09	ci right 1.869678e-06	k: 1	n:2980000
KS ci ratio: 2.771857e+00	ci left: 8.495909e-09	ci right 1.869678e-06	k: 1	n:2980000
NFE2L2   2980000 perm   3663 sec   (814 perm/sec)   p_kst 3.355705e-07   p_cons 3.355705e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.233738e-06	k: 0	n:2990000
Cons ci ratio: 2.771857e+00	ci left: 8.467494e-09	ci right 1.863424e-06	k: 1	n:2990000
KS ci ratio: 2.771857e+00	ci left: 8.467494e-09	ci right 1.863424e-06	k: 1	n:2990000
NFE2L2   2990000 perm   3685 sec   (811 perm/sec)   p_kst 3.344482e-07   p_cons 3.344482e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.229626e-06	k: 0	n:3000000
Cons ci ratio: 2.771857e+00	ci left: 8.439269e-09	ci right 1.857213e-06	k: 1	n:3000000
KS ci ratio: 2.771857e+00	ci left: 8.439269e-09	ci right 1.857213e-06	k: 1	n:3000000
NFE2L2   3000000 perm   3707 sec   (809 perm/sec)   p_kst 3.333333e-07   p_cons 3.333333e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.225541e-06	k: 0	n:3010000
Cons ci ratio: 2.771857e+00	ci left: 8.411232e-09	ci right 1.851043e-06	k: 1	n:3010000
KS ci ratio: 2.771857e+00	ci left: 8.411232e-09	ci right 1.851043e-06	k: 1	n:3010000
NFE2L2   3010000 perm   3730 sec   (807 perm/sec)   p_kst 3.322259e-07   p_cons 3.322259e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.221483e-06	k: 0	n:3020000
Cons ci ratio: 2.771857e+00	ci left: 8.383380e-09	ci right 1.844914e-06	k: 1	n:3020000
KS ci ratio: 2.771857e+00	ci left: 8.383380e-09	ci right 1.844914e-06	k: 1	n:3020000
NFE2L2   3020000 perm   3754 sec   (805 perm/sec)   p_kst 3.311258e-07   p_cons 3.311258e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.217451e-06	k: 0	n:3030000
Cons ci ratio: 2.771857e+00	ci left: 8.355712e-09	ci right 1.838825e-06	k: 1	n:3030000
KS ci ratio: 2.771857e+00	ci left: 8.355712e-09	ci right 1.838825e-06	k: 1	n:3030000
NFE2L2   3030000 perm   3776 sec   (802 perm/sec)   p_kst 3.300330e-07   p_cons 3.300330e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.213446e-06	k: 0	n:3040000
Cons ci ratio: 2.771857e+00	ci left: 8.328226e-09	ci right 1.832776e-06	k: 1	n:3040000
KS ci ratio: 2.771857e+00	ci left: 8.328226e-09	ci right 1.832776e-06	k: 1	n:3040000
NFE2L2   3040000 perm   3799 sec   (800 perm/sec)   p_kst 3.289474e-07   p_cons 3.289474e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.209468e-06	k: 0	n:3050000
Cons ci ratio: 2.771857e+00	ci left: 8.300921e-09	ci right 1.826767e-06	k: 1	n:3050000
KS ci ratio: 2.771857e+00	ci left: 8.300921e-09	ci right 1.826767e-06	k: 1	n:3050000
NFE2L2   3050000 perm   3822 sec   (798 perm/sec)   p_kst 3.278689e-07   p_cons 3.278689e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.205515e-06	k: 0	n:3060000
Cons ci ratio: 2.771857e+00	ci left: 8.273793e-09	ci right 1.820797e-06	k: 1	n:3060000
KS ci ratio: 2.771857e+00	ci left: 8.273793e-09	ci right 1.820797e-06	k: 1	n:3060000
NFE2L2   3060000 perm   3845 sec   (796 perm/sec)   p_kst 3.267974e-07   p_cons 3.267974e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.201589e-06	k: 0	n:3070000
Cons ci ratio: 2.771857e+00	ci left: 8.246843e-09	ci right 1.814866e-06	k: 1	n:3070000
KS ci ratio: 2.771857e+00	ci left: 8.246843e-09	ci right 1.814866e-06	k: 1	n:3070000
NFE2L2   3070000 perm   3868 sec   (794 perm/sec)   p_kst 3.257329e-07   p_cons 3.257329e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.197687e-06	k: 0	n:3080000
Cons ci ratio: 2.771857e+00	ci left: 8.220068e-09	ci right 1.808974e-06	k: 1	n:3080000
KS ci ratio: 2.771857e+00	ci left: 8.220068e-09	ci right 1.808974e-06	k: 1	n:3080000
NFE2L2   3080000 perm   3891 sec   (791 perm/sec)   p_kst 3.246753e-07   p_cons 3.246753e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.193811e-06	k: 0	n:3090000
Cons ci ratio: 2.771857e+00	ci left: 8.193465e-09	ci right 1.803120e-06	k: 1	n:3090000
KS ci ratio: 2.771857e+00	ci left: 8.193465e-09	ci right 1.803120e-06	k: 1	n:3090000
NFE2L2   3090000 perm   3915 sec   (789 perm/sec)   p_kst 3.236246e-07   p_cons 3.236246e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.189960e-06	k: 0	n:3100000
Cons ci ratio: 2.771857e+00	ci left: 8.167035e-09	ci right 1.797303e-06	k: 1	n:3100000
KS ci ratio: 2.771857e+00	ci left: 8.167035e-09	ci right 1.797303e-06	k: 1	n:3100000
NFE2L2   3100000 perm   3938 sec   (787 perm/sec)   p_kst 3.225806e-07   p_cons 3.225806e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.186134e-06	k: 0	n:3110000
Cons ci ratio: 2.771857e+00	ci left: 8.140774e-09	ci right 1.791524e-06	k: 1	n:3110000
KS ci ratio: 2.771857e+00	ci left: 8.140774e-09	ci right 1.791524e-06	k: 1	n:3110000
NFE2L2   3110000 perm   3961 sec   (785 perm/sec)   p_kst 3.215434e-07   p_cons 3.215434e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.182332e-06	k: 0	n:3120000
Cons ci ratio: 2.771857e+00	ci left: 8.114682e-09	ci right 1.785782e-06	k: 1	n:3120000
KS ci ratio: 2.771857e+00	ci left: 8.114682e-09	ci right 1.785782e-06	k: 1	n:3120000
NFE2L2   3120000 perm   3984 sec   (783 perm/sec)   p_kst 3.205128e-07   p_cons 3.205128e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.178555e-06	k: 0	n:3130000
Cons ci ratio: 2.771857e+00	ci left: 8.088757e-09	ci right 1.780076e-06	k: 1	n:3130000
KS ci ratio: 2.771857e+00	ci left: 8.088757e-09	ci right 1.780076e-06	k: 1	n:3130000
NFE2L2   3130000 perm   4008 sec   (781 perm/sec)   p_kst 3.194888e-07   p_cons 3.194888e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.174802e-06	k: 0	n:3140000
Cons ci ratio: 2.771857e+00	ci left: 8.062996e-09	ci right 1.774407e-06	k: 1	n:3140000
KS ci ratio: 2.771857e+00	ci left: 8.062996e-09	ci right 1.774407e-06	k: 1	n:3140000
NFE2L2   3140000 perm   4032 sec   (779 perm/sec)   p_kst 3.184713e-07   p_cons 3.184713e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.171072e-06	k: 0	n:3150000
Cons ci ratio: 2.771857e+00	ci left: 8.037399e-09	ci right 1.768774e-06	k: 1	n:3150000
KS ci ratio: 2.771857e+00	ci left: 8.037399e-09	ci right 1.768774e-06	k: 1	n:3150000
NFE2L2   3150000 perm   4055 sec   (777 perm/sec)   p_kst 3.174603e-07   p_cons 3.174603e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.167366e-06	k: 0	n:3160000
Cons ci ratio: 2.771857e+00	ci left: 8.011965e-09	ci right 1.763177e-06	k: 1	n:3160000
KS ci ratio: 2.771857e+00	ci left: 8.011965e-09	ci right 1.763177e-06	k: 1	n:3160000
NFE2L2   3160000 perm   4079 sec   (775 perm/sec)   p_kst 3.164557e-07   p_cons 3.164557e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.163684e-06	k: 0	n:3170000
Cons ci ratio: 2.771857e+00	ci left: 7.986690e-09	ci right 1.757615e-06	k: 1	n:3170000
KS ci ratio: 2.771857e+00	ci left: 7.986690e-09	ci right 1.757615e-06	k: 1	n:3170000
NFE2L2   3170000 perm   4103 sec   (773 perm/sec)   p_kst 3.154574e-07   p_cons 3.154574e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.160024e-06	k: 0	n:3180000
Cons ci ratio: 2.771857e+00	ci left: 7.961575e-09	ci right 1.752088e-06	k: 1	n:3180000
KS ci ratio: 2.771857e+00	ci left: 7.961575e-09	ci right 1.752088e-06	k: 1	n:3180000
NFE2L2   3180000 perm   4127 sec   (771 perm/sec)   p_kst 3.144654e-07   p_cons 3.144654e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.156388e-06	k: 0	n:3190000
Cons ci ratio: 2.771857e+00	ci left: 7.936617e-09	ci right 1.746595e-06	k: 1	n:3190000
KS ci ratio: 2.771857e+00	ci left: 7.936617e-09	ci right 1.746595e-06	k: 1	n:3190000
NFE2L2   3190000 perm   4151 sec   (768 perm/sec)   p_kst 3.134796e-07   p_cons 3.134796e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.152774e-06	k: 0	n:3200000
Cons ci ratio: 2.771857e+00	ci left: 7.911815e-09	ci right 1.741137e-06	k: 1	n:3200000
KS ci ratio: 2.771857e+00	ci left: 7.911815e-09	ci right 1.741137e-06	k: 1	n:3200000
NFE2L2   3200000 perm   4175 sec   (766 perm/sec)   p_kst 3.125000e-07   p_cons 3.125000e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.149183e-06	k: 0	n:3210000
Cons ci ratio: 2.771857e+00	ci left: 7.887168e-09	ci right 1.735713e-06	k: 1	n:3210000
KS ci ratio: 2.771857e+00	ci left: 7.887168e-09	ci right 1.735713e-06	k: 1	n:3210000
NFE2L2   3210000 perm   4200 sec   (764 perm/sec)   p_kst 3.115265e-07   p_cons 3.115265e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.145614e-06	k: 0	n:3220000
Cons ci ratio: 2.771857e+00	ci left: 7.862673e-09	ci right 1.730323e-06	k: 1	n:3220000
KS ci ratio: 2.771857e+00	ci left: 7.862673e-09	ci right 1.730323e-06	k: 1	n:3220000
NFE2L2   3220000 perm   4223 sec   (762 perm/sec)   p_kst 3.105590e-07   p_cons 3.105590e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.142067e-06	k: 0	n:3230000
Cons ci ratio: 2.771857e+00	ci left: 7.838331e-09	ci right 1.724966e-06	k: 1	n:3230000
KS ci ratio: 2.771857e+00	ci left: 7.838331e-09	ci right 1.724966e-06	k: 1	n:3230000
NFE2L2   3230000 perm   4247 sec   (760 perm/sec)   p_kst 3.095975e-07   p_cons 3.095975e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.138542e-06	k: 0	n:3240000
Cons ci ratio: 2.771857e+00	ci left: 7.814138e-09	ci right 1.719642e-06	k: 1	n:3240000
KS ci ratio: 2.771857e+00	ci left: 7.814138e-09	ci right 1.719642e-06	k: 1	n:3240000
NFE2L2   3240000 perm   4272 sec   (758 perm/sec)   p_kst 3.086420e-07   p_cons 3.086420e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.135039e-06	k: 0	n:3250000
Cons ci ratio: 2.771857e+00	ci left: 7.790095e-09	ci right 1.714351e-06	k: 1	n:3250000
KS ci ratio: 2.771857e+00	ci left: 7.790095e-09	ci right 1.714351e-06	k: 1	n:3250000
NFE2L2   3250000 perm   4296 sec   (757 perm/sec)   p_kst 3.076923e-07   p_cons 3.076923e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.131557e-06	k: 0	n:3260000
Cons ci ratio: 2.771857e+00	ci left: 7.766199e-09	ci right 1.709092e-06	k: 1	n:3260000
KS ci ratio: 2.771857e+00	ci left: 7.766199e-09	ci right 1.709092e-06	k: 1	n:3260000
NFE2L2   3260000 perm   4320 sec   (755 perm/sec)   p_kst 3.067485e-07   p_cons 3.067485e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.128097e-06	k: 0	n:3270000
Cons ci ratio: 2.771857e+00	ci left: 7.742449e-09	ci right 1.703865e-06	k: 1	n:3270000
KS ci ratio: 2.771857e+00	ci left: 7.742449e-09	ci right 1.703865e-06	k: 1	n:3270000
NFE2L2   3270000 perm   4345 sec   (753 perm/sec)   p_kst 3.058104e-07   p_cons 3.058104e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.124658e-06	k: 0	n:3280000
Cons ci ratio: 2.771857e+00	ci left: 7.718844e-09	ci right 1.698671e-06	k: 1	n:3280000
KS ci ratio: 2.771857e+00	ci left: 7.718844e-09	ci right 1.698671e-06	k: 1	n:3280000
NFE2L2   3280000 perm   4370 sec   (751 perm/sec)   p_kst 3.048780e-07   p_cons 3.048780e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.121239e-06	k: 0	n:3290000
Cons ci ratio: 2.771857e+00	ci left: 7.695382e-09	ci right 1.693507e-06	k: 1	n:3290000
KS ci ratio: 2.771857e+00	ci left: 7.695382e-09	ci right 1.693507e-06	k: 1	n:3290000
NFE2L2   3290000 perm   4395 sec   (749 perm/sec)   p_kst 3.039514e-07   p_cons 3.039514e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.117842e-06	k: 0	n:3300000
Cons ci ratio: 2.771857e+00	ci left: 7.672063e-09	ci right 1.688376e-06	k: 1	n:3300000
KS ci ratio: 2.771857e+00	ci left: 7.672063e-09	ci right 1.688376e-06	k: 1	n:3300000
NFE2L2   3300000 perm   4419 sec   (747 perm/sec)   p_kst 3.030303e-07   p_cons 3.030303e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.114464e-06	k: 0	n:3310000
Cons ci ratio: 2.771857e+00	ci left: 7.648885e-09	ci right 1.683275e-06	k: 1	n:3310000
KS ci ratio: 2.771857e+00	ci left: 7.648885e-09	ci right 1.683275e-06	k: 1	n:3310000
NFE2L2   3310000 perm   4445 sec   (745 perm/sec)   p_kst 3.021148e-07   p_cons 3.021148e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.111108e-06	k: 0	n:3320000
Cons ci ratio: 2.771857e+00	ci left: 7.625846e-09	ci right 1.678205e-06	k: 1	n:3320000
KS ci ratio: 2.771857e+00	ci left: 7.625846e-09	ci right 1.678205e-06	k: 1	n:3320000
NFE2L2   3320000 perm   4469 sec   (743 perm/sec)   p_kst 3.012048e-07   p_cons 3.012048e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.107771e-06	k: 0	n:3330000
Cons ci ratio: 2.771857e+00	ci left: 7.602945e-09	ci right 1.673165e-06	k: 1	n:3330000
KS ci ratio: 2.771857e+00	ci left: 7.602945e-09	ci right 1.673165e-06	k: 1	n:3330000
NFE2L2   3330000 perm   4494 sec   (741 perm/sec)   p_kst 3.003003e-07   p_cons 3.003003e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.104454e-06	k: 0	n:3340000
Cons ci ratio: 2.771857e+00	ci left: 7.580182e-09	ci right 1.668156e-06	k: 1	n:3340000
KS ci ratio: 2.771857e+00	ci left: 7.580182e-09	ci right 1.668156e-06	k: 1	n:3340000
NFE2L2   3340000 perm   4519 sec   (739 perm/sec)   p_kst 2.994012e-07   p_cons 2.994012e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.101157e-06	k: 0	n:3350000
Cons ci ratio: 2.771857e+00	ci left: 7.557555e-09	ci right 1.663176e-06	k: 1	n:3350000
KS ci ratio: 2.771857e+00	ci left: 7.557555e-09	ci right 1.663176e-06	k: 1	n:3350000
NFE2L2   3350000 perm   4543 sec   (737 perm/sec)   p_kst 2.985075e-07   p_cons 2.985075e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.097880e-06	k: 0	n:3360000
Cons ci ratio: 2.771857e+00	ci left: 7.535062e-09	ci right 1.658226e-06	k: 1	n:3360000
KS ci ratio: 2.771857e+00	ci left: 7.535062e-09	ci right 1.658226e-06	k: 1	n:3360000
NFE2L2   3360000 perm   4568 sec   (736 perm/sec)   p_kst 2.976190e-07   p_cons 2.976190e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.094622e-06	k: 0	n:3370000
Cons ci ratio: 2.771857e+00	ci left: 7.512703e-09	ci right 1.653306e-06	k: 1	n:3370000
KS ci ratio: 2.771857e+00	ci left: 7.512703e-09	ci right 1.653306e-06	k: 1	n:3370000
NFE2L2   3370000 perm   4593 sec   (734 perm/sec)   p_kst 2.967359e-07   p_cons 2.967359e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.091384e-06	k: 0	n:3380000
Cons ci ratio: 2.771857e+00	ci left: 7.490476e-09	ci right 1.648414e-06	k: 1	n:3380000
KS ci ratio: 2.771857e+00	ci left: 7.490476e-09	ci right 1.648414e-06	k: 1	n:3380000
NFE2L2   3380000 perm   4618 sec   (732 perm/sec)   p_kst 2.958580e-07   p_cons 2.958580e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.088164e-06	k: 0	n:3390000
Cons ci ratio: 2.771857e+00	ci left: 7.468380e-09	ci right 1.643552e-06	k: 1	n:3390000
KS ci ratio: 2.771857e+00	ci left: 7.468380e-09	ci right 1.643552e-06	k: 1	n:3390000
NFE2L2   3390000 perm   4643 sec   (730 perm/sec)   p_kst 2.949853e-07   p_cons 2.949853e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.084964e-06	k: 0	n:3400000
Cons ci ratio: 2.771857e+00	ci left: 7.446414e-09	ci right 1.638718e-06	k: 1	n:3400000
KS ci ratio: 2.771857e+00	ci left: 7.446414e-09	ci right 1.638718e-06	k: 1	n:3400000
NFE2L2   3400000 perm   4669 sec   (728 perm/sec)   p_kst 2.941176e-07   p_cons 2.941176e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.081782e-06	k: 0	n:3410000
Cons ci ratio: 2.771857e+00	ci left: 7.424577e-09	ci right 1.633912e-06	k: 1	n:3410000
KS ci ratio: 2.771857e+00	ci left: 7.424577e-09	ci right 1.633912e-06	k: 1	n:3410000
NFE2L2   3410000 perm   4695 sec   (726 perm/sec)   p_kst 2.932551e-07   p_cons 2.932551e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.078619e-06	k: 0	n:3420000
Cons ci ratio: 2.771857e+00	ci left: 7.402868e-09	ci right 1.629134e-06	k: 1	n:3420000
KS ci ratio: 2.771857e+00	ci left: 7.402868e-09	ci right 1.629134e-06	k: 1	n:3420000
NFE2L2   3420000 perm   4720 sec   (725 perm/sec)   p_kst 2.923977e-07   p_cons 2.923977e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.075474e-06	k: 0	n:3430000
Cons ci ratio: 2.771857e+00	ci left: 7.381285e-09	ci right 1.624385e-06	k: 1	n:3430000
KS ci ratio: 2.771857e+00	ci left: 7.381285e-09	ci right 1.624385e-06	k: 1	n:3430000
NFE2L2   3430000 perm   4746 sec   (723 perm/sec)   p_kst 2.915452e-07   p_cons 2.915452e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.072348e-06	k: 0	n:3440000
Cons ci ratio: 2.771857e+00	ci left: 7.359828e-09	ci right 1.619663e-06	k: 1	n:3440000
KS ci ratio: 2.771857e+00	ci left: 7.359828e-09	ci right 1.619663e-06	k: 1	n:3440000
NFE2L2   3440000 perm   4772 sec   (721 perm/sec)   p_kst 2.906977e-07   p_cons 2.906977e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.069240e-06	k: 0	n:3450000
Cons ci ratio: 2.771857e+00	ci left: 7.338495e-09	ci right 1.614968e-06	k: 1	n:3450000
KS ci ratio: 2.771857e+00	ci left: 7.338495e-09	ci right 1.614968e-06	k: 1	n:3450000
NFE2L2   3450000 perm   4798 sec   (719 perm/sec)   p_kst 2.898551e-07   p_cons 2.898551e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.066150e-06	k: 0	n:3460000
Cons ci ratio: 2.771857e+00	ci left: 7.317286e-09	ci right 1.610300e-06	k: 1	n:3460000
KS ci ratio: 2.771857e+00	ci left: 7.317286e-09	ci right 1.610300e-06	k: 1	n:3460000
NFE2L2   3460000 perm   4824 sec   (717 perm/sec)   p_kst 2.890173e-07   p_cons 2.890173e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.063077e-06	k: 0	n:3470000
Cons ci ratio: 2.771857e+00	ci left: 7.296198e-09	ci right 1.605660e-06	k: 1	n:3470000
KS ci ratio: 2.771857e+00	ci left: 7.296198e-09	ci right 1.605660e-06	k: 1	n:3470000
NFE2L2   3470000 perm   4850 sec   (716 perm/sec)   p_kst 2.881844e-07   p_cons 2.881844e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.060022e-06	k: 0	n:3480000
Cons ci ratio: 2.771857e+00	ci left: 7.275232e-09	ci right 1.601046e-06	k: 1	n:3480000
KS ci ratio: 2.771857e+00	ci left: 7.275232e-09	ci right 1.601046e-06	k: 1	n:3480000
NFE2L2   3480000 perm   4876 sec   (714 perm/sec)   p_kst 2.873563e-07   p_cons 2.873563e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.056985e-06	k: 0	n:3490000
Cons ci ratio: 2.771857e+00	ci left: 7.254386e-09	ci right 1.596458e-06	k: 1	n:3490000
KS ci ratio: 2.771857e+00	ci left: 7.254386e-09	ci right 1.596458e-06	k: 1	n:3490000
NFE2L2   3490000 perm   4902 sec   (712 perm/sec)   p_kst 2.865330e-07   p_cons 2.865330e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.053965e-06	k: 0	n:3500000
Cons ci ratio: 2.771857e+00	ci left: 7.233659e-09	ci right 1.591897e-06	k: 1	n:3500000
KS ci ratio: 2.771857e+00	ci left: 7.233659e-09	ci right 1.591897e-06	k: 1	n:3500000
NFE2L2   3500000 perm   4928 sec   (710 perm/sec)   p_kst 2.857143e-07   p_cons 2.857143e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.050962e-06	k: 0	n:3510000
Cons ci ratio: 2.771857e+00	ci left: 7.213051e-09	ci right 1.587362e-06	k: 1	n:3510000
KS ci ratio: 2.771857e+00	ci left: 7.213051e-09	ci right 1.587362e-06	k: 1	n:3510000
NFE2L2   3510000 perm   4954 sec   (709 perm/sec)   p_kst 2.849003e-07   p_cons 2.849003e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.047977e-06	k: 0	n:3520000
Cons ci ratio: 2.771857e+00	ci left: 7.192559e-09	ci right 1.582852e-06	k: 1	n:3520000
KS ci ratio: 2.771857e+00	ci left: 7.192559e-09	ci right 1.582852e-06	k: 1	n:3520000
NFE2L2   3520000 perm   4980 sec   (707 perm/sec)   p_kst 2.840909e-07   p_cons 2.840909e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.045008e-06	k: 0	n:3530000
Cons ci ratio: 2.771857e+00	ci left: 7.172184e-09	ci right 1.578368e-06	k: 1	n:3530000
KS ci ratio: 2.771857e+00	ci left: 7.172184e-09	ci right 1.578368e-06	k: 1	n:3530000
NFE2L2   3530000 perm   5007 sec   (705 perm/sec)   p_kst 2.832861e-07   p_cons 2.832861e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.042056e-06	k: 0	n:3540000
Cons ci ratio: 2.771857e+00	ci left: 7.151923e-09	ci right 1.573910e-06	k: 1	n:3540000
KS ci ratio: 2.771857e+00	ci left: 7.151923e-09	ci right 1.573910e-06	k: 1	n:3540000
NFE2L2   3540000 perm   5034 sec   (703 perm/sec)   p_kst 2.824859e-07   p_cons 2.824859e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.039120e-06	k: 0	n:3550000
Cons ci ratio: 2.771857e+00	ci left: 7.131777e-09	ci right 1.569476e-06	k: 1	n:3550000
KS ci ratio: 2.771857e+00	ci left: 7.131777e-09	ci right 1.569476e-06	k: 1	n:3550000
NFE2L2   3550000 perm   5061 sec   (701 perm/sec)   p_kst 2.816901e-07   p_cons 2.816901e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.036202e-06	k: 0	n:3560000
Cons ci ratio: 2.771857e+00	ci left: 7.111744e-09	ci right 1.565067e-06	k: 1	n:3560000
KS ci ratio: 2.771857e+00	ci left: 7.111744e-09	ci right 1.565067e-06	k: 1	n:3560000
NFE2L2   3560000 perm   5087 sec   (700 perm/sec)   p_kst 2.808989e-07   p_cons 2.808989e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.033299e-06	k: 0	n:3570000
Cons ci ratio: 2.771857e+00	ci left: 7.091823e-09	ci right 1.560683e-06	k: 1	n:3570000
KS ci ratio: 2.771857e+00	ci left: 7.091823e-09	ci right 1.560683e-06	k: 1	n:3570000
NFE2L2   3570000 perm   5113 sec   (698 perm/sec)   p_kst 2.801120e-07   p_cons 2.801120e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.030413e-06	k: 0	n:3580000
Cons ci ratio: 2.771857e+00	ci left: 7.072013e-09	ci right 1.556324e-06	k: 1	n:3580000
KS ci ratio: 2.771857e+00	ci left: 7.072013e-09	ci right 1.556324e-06	k: 1	n:3580000
NFE2L2   3580000 perm   5140 sec   (697 perm/sec)   p_kst 2.793296e-07   p_cons 2.793296e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.027542e-06	k: 0	n:3590000
Cons ci ratio: 2.771857e+00	ci left: 7.052314e-09	ci right 1.551989e-06	k: 1	n:3590000
KS ci ratio: 2.771857e+00	ci left: 7.052314e-09	ci right 1.551989e-06	k: 1	n:3590000
NFE2L2   3590000 perm   5167 sec   (695 perm/sec)   p_kst 2.785515e-07   p_cons 2.785515e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.024688e-06	k: 0	n:3600000
Cons ci ratio: 2.771857e+00	ci left: 7.032724e-09	ci right 1.547678e-06	k: 1	n:3600000
KS ci ratio: 2.771857e+00	ci left: 7.032724e-09	ci right 1.547678e-06	k: 1	n:3600000
NFE2L2   3600000 perm   5194 sec   (693 perm/sec)   p_kst 2.777778e-07   p_cons 2.777778e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.021850e-06	k: 0	n:3610000
Cons ci ratio: 2.771857e+00	ci left: 7.013243e-09	ci right 1.543391e-06	k: 1	n:3610000
KS ci ratio: 2.771857e+00	ci left: 7.013243e-09	ci right 1.543391e-06	k: 1	n:3610000
NFE2L2   3610000 perm   5221 sec   (691 perm/sec)   p_kst 2.770083e-07   p_cons 2.770083e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.019027e-06	k: 0	n:3620000
Cons ci ratio: 2.771857e+00	ci left: 6.993870e-09	ci right 1.539127e-06	k: 1	n:3620000
KS ci ratio: 2.771857e+00	ci left: 6.993870e-09	ci right 1.539127e-06	k: 1	n:3620000
NFE2L2   3620000 perm   5248 sec   (690 perm/sec)   p_kst 2.762431e-07   p_cons 2.762431e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.016220e-06	k: 0	n:3630000
Cons ci ratio: 2.771857e+00	ci left: 6.974603e-09	ci right 1.534887e-06	k: 1	n:3630000
KS ci ratio: 2.771857e+00	ci left: 6.974603e-09	ci right 1.534887e-06	k: 1	n:3630000
NFE2L2   3630000 perm   5274 sec   (688 perm/sec)   p_kst 2.754821e-07   p_cons 2.754821e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.013428e-06	k: 0	n:3640000
Cons ci ratio: 2.771857e+00	ci left: 6.955442e-09	ci right 1.530670e-06	k: 1	n:3640000
KS ci ratio: 2.771857e+00	ci left: 6.955442e-09	ci right 1.530670e-06	k: 1	n:3640000
NFE2L2   3640000 perm   5302 sec   (687 perm/sec)   p_kst 2.747253e-07   p_cons 2.747253e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.010651e-06	k: 0	n:3650000
Cons ci ratio: 2.771857e+00	ci left: 6.936386e-09	ci right 1.526477e-06	k: 1	n:3650000
KS ci ratio: 2.771857e+00	ci left: 6.936386e-09	ci right 1.526477e-06	k: 1	n:3650000
NFE2L2   3650000 perm   5329 sec   (685 perm/sec)   p_kst 2.739726e-07   p_cons 2.739726e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.007890e-06	k: 0	n:3660000
Cons ci ratio: 2.771857e+00	ci left: 6.917434e-09	ci right 1.522306e-06	k: 1	n:3660000
KS ci ratio: 2.771857e+00	ci left: 6.917434e-09	ci right 1.522306e-06	k: 1	n:3660000
NFE2L2   3660000 perm   5357 sec   (683 perm/sec)   p_kst 2.732240e-07   p_cons 2.732240e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.005144e-06	k: 0	n:3670000
Cons ci ratio: 2.771857e+00	ci left: 6.898585e-09	ci right 1.518158e-06	k: 1	n:3670000
KS ci ratio: 2.771857e+00	ci left: 6.898585e-09	ci right 1.518158e-06	k: 1	n:3670000
NFE2L2   3670000 perm   5384 sec   (682 perm/sec)   p_kst 2.724796e-07   p_cons 2.724796e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.002412e-06	k: 0	n:3680000
Cons ci ratio: 2.771857e+00	ci left: 6.879839e-09	ci right 1.514033e-06	k: 1	n:3680000
KS ci ratio: 2.771857e+00	ci left: 6.879839e-09	ci right 1.514033e-06	k: 1	n:3680000
NFE2L2   3680000 perm   5411 sec   (680 perm/sec)   p_kst 2.717391e-07   p_cons 2.717391e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.996958e-07	k: 0	n:3690000
Cons ci ratio: 2.771857e+00	ci left: 6.861195e-09	ci right 1.509930e-06	k: 1	n:3690000
KS ci ratio: 2.771857e+00	ci left: 6.861195e-09	ci right 1.509930e-06	k: 1	n:3690000
NFE2L2   3690000 perm   5439 sec   (678 perm/sec)   p_kst 2.710027e-07   p_cons 2.710027e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.969940e-07	k: 0	n:3700000
Cons ci ratio: 2.771857e+00	ci left: 6.842651e-09	ci right 1.505849e-06	k: 1	n:3700000
KS ci ratio: 2.771857e+00	ci left: 6.842651e-09	ci right 1.505849e-06	k: 1	n:3700000
NFE2L2   3700000 perm   5467 sec   (677 perm/sec)   p_kst 2.702703e-07   p_cons 2.702703e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.943066e-07	k: 0	n:3710000
Cons ci ratio: 2.771857e+00	ci left: 6.824207e-09	ci right 1.501790e-06	k: 1	n:3710000
KS ci ratio: 2.771857e+00	ci left: 6.824207e-09	ci right 1.501790e-06	k: 1	n:3710000
NFE2L2   3710000 perm   5495 sec   (675 perm/sec)   p_kst 2.695418e-07   p_cons 2.695418e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.916338e-07	k: 0	n:3720000
Cons ci ratio: 2.771857e+00	ci left: 6.805862e-09	ci right 1.497753e-06	k: 1	n:3720000
KS ci ratio: 2.771857e+00	ci left: 6.805862e-09	ci right 1.497753e-06	k: 1	n:3720000
NFE2L2   3720000 perm   5522 sec   (674 perm/sec)   p_kst 2.688172e-07   p_cons 2.688172e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.889752e-07	k: 0	n:3730000
Cons ci ratio: 2.771857e+00	ci left: 6.787616e-09	ci right 1.493737e-06	k: 1	n:3730000
KS ci ratio: 2.771857e+00	ci left: 6.787616e-09	ci right 1.493737e-06	k: 1	n:3730000
NFE2L2   3730000 perm   5550 sec   (672 perm/sec)   p_kst 2.680965e-07   p_cons 2.680965e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.863309e-07	k: 0	n:3740000
Cons ci ratio: 2.771857e+00	ci left: 6.769467e-09	ci right 1.489743e-06	k: 1	n:3740000
KS ci ratio: 2.771857e+00	ci left: 6.769467e-09	ci right 1.489743e-06	k: 1	n:3740000
NFE2L2   3740000 perm   5578 sec   (671 perm/sec)   p_kst 2.673797e-07   p_cons 2.673797e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.837007e-07	k: 0	n:3750000
Cons ci ratio: 2.771857e+00	ci left: 6.751415e-09	ci right 1.485771e-06	k: 1	n:3750000
KS ci ratio: 2.771857e+00	ci left: 6.751415e-09	ci right 1.485771e-06	k: 1	n:3750000
NFE2L2   3750000 perm   5605 sec   (669 perm/sec)   p_kst 2.666667e-07   p_cons 2.666667e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.810845e-07	k: 0	n:3760000
Cons ci ratio: 2.771857e+00	ci left: 6.733460e-09	ci right 1.481819e-06	k: 1	n:3760000
KS ci ratio: 2.771857e+00	ci left: 6.733460e-09	ci right 1.481819e-06	k: 1	n:3760000
NFE2L2   3760000 perm   5633 sec   (667 perm/sec)   p_kst 2.659574e-07   p_cons 2.659574e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.784821e-07	k: 0	n:3770000
Cons ci ratio: 2.771857e+00	ci left: 6.715599e-09	ci right 1.477889e-06	k: 1	n:3770000
KS ci ratio: 2.771857e+00	ci left: 6.715599e-09	ci right 1.477889e-06	k: 1	n:3770000
NFE2L2   3770000 perm   5661 sec   (666 perm/sec)   p_kst 2.652520e-07   p_cons 2.652520e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.758936e-07	k: 0	n:3780000
Cons ci ratio: 2.771857e+00	ci left: 6.697833e-09	ci right 1.473979e-06	k: 1	n:3780000
KS ci ratio: 2.771857e+00	ci left: 6.697833e-09	ci right 1.473979e-06	k: 1	n:3780000
NFE2L2   3780000 perm   5689 sec   (664 perm/sec)   p_kst 2.645503e-07   p_cons 2.645503e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.733186e-07	k: 0	n:3790000
Cons ci ratio: 2.771857e+00	ci left: 6.680160e-09	ci right 1.470090e-06	k: 1	n:3790000
KS ci ratio: 2.771857e+00	ci left: 6.680160e-09	ci right 1.470090e-06	k: 1	n:3790000
NFE2L2   3790000 perm   5717 sec   (663 perm/sec)   p_kst 2.638522e-07   p_cons 2.638522e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.707573e-07	k: 0	n:3800000
Cons ci ratio: 2.771857e+00	ci left: 6.662581e-09	ci right 1.466221e-06	k: 1	n:3800000
KS ci ratio: 2.771857e+00	ci left: 6.662581e-09	ci right 1.466221e-06	k: 1	n:3800000
NFE2L2   3800000 perm   5744 sec   (662 perm/sec)   p_kst 2.631579e-07   p_cons 2.631579e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.682094e-07	k: 0	n:3810000
Cons ci ratio: 2.771857e+00	ci left: 6.645094e-09	ci right 1.462373e-06	k: 1	n:3810000
KS ci ratio: 2.771857e+00	ci left: 6.645094e-09	ci right 1.462373e-06	k: 1	n:3810000
NFE2L2   3810000 perm   5772 sec   (660 perm/sec)   p_kst 2.624672e-07   p_cons 2.624672e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.656748e-07	k: 0	n:3820000
Cons ci ratio: 2.771857e+00	ci left: 6.627698e-09	ci right 1.458545e-06	k: 1	n:3820000
KS ci ratio: 2.771857e+00	ci left: 6.627698e-09	ci right 1.458545e-06	k: 1	n:3820000
NFE2L2   3820000 perm   5801 sec   (659 perm/sec)   p_kst 2.617801e-07   p_cons 2.617801e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.631534e-07	k: 0	n:3830000
Cons ci ratio: 2.771857e+00	ci left: 6.610394e-09	ci right 1.454736e-06	k: 1	n:3830000
KS ci ratio: 2.771857e+00	ci left: 6.610394e-09	ci right 1.454736e-06	k: 1	n:3830000
NFE2L2   3830000 perm   5830 sec   (657 perm/sec)   p_kst 2.610966e-07   p_cons 2.610966e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.606452e-07	k: 0	n:3840000
Cons ci ratio: 2.771857e+00	ci left: 6.593179e-09	ci right 1.450948e-06	k: 1	n:3840000
KS ci ratio: 2.771857e+00	ci left: 6.593179e-09	ci right 1.450948e-06	k: 1	n:3840000
NFE2L2   3840000 perm   5858 sec   (656 perm/sec)   p_kst 2.604167e-07   p_cons 2.604167e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.581500e-07	k: 0	n:3850000
Cons ci ratio: 2.771858e+00	ci left: 6.576054e-09	ci right 1.447179e-06	k: 1	n:3850000
KS ci ratio: 2.771858e+00	ci left: 6.576054e-09	ci right 1.447179e-06	k: 1	n:3850000
NFE2L2   3850000 perm   5886 sec   (654 perm/sec)   p_kst 2.597403e-07   p_cons 2.597403e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.556678e-07	k: 0	n:3860000
Cons ci ratio: 2.771858e+00	ci left: 6.559018e-09	ci right 1.443430e-06	k: 1	n:3860000
KS ci ratio: 2.771858e+00	ci left: 6.559018e-09	ci right 1.443430e-06	k: 1	n:3860000
NFE2L2   3860000 perm   5914 sec   (653 perm/sec)   p_kst 2.590674e-07   p_cons 2.590674e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.531984e-07	k: 0	n:3870000
Cons ci ratio: 2.771858e+00	ci left: 6.542069e-09	ci right 1.439700e-06	k: 1	n:3870000
KS ci ratio: 2.771858e+00	ci left: 6.542069e-09	ci right 1.439700e-06	k: 1	n:3870000
NFE2L2   3870000 perm   5943 sec   (651 perm/sec)   p_kst 2.583979e-07   p_cons 2.583979e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.507417e-07	k: 0	n:3880000
Cons ci ratio: 2.771858e+00	ci left: 6.525208e-09	ci right 1.435990e-06	k: 1	n:3880000
KS ci ratio: 2.771858e+00	ci left: 6.525208e-09	ci right 1.435990e-06	k: 1	n:3880000
NFE2L2   3880000 perm   5973 sec   (650 perm/sec)   p_kst 2.577320e-07   p_cons 2.577320e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.482976e-07	k: 0	n:3890000
Cons ci ratio: 2.771858e+00	ci left: 6.508434e-09	ci right 1.432298e-06	k: 1	n:3890000
KS ci ratio: 2.771858e+00	ci left: 6.508434e-09	ci right 1.432298e-06	k: 1	n:3890000
NFE2L2   3890000 perm   6002 sec   (648 perm/sec)   p_kst 2.570694e-07   p_cons 2.570694e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.458661e-07	k: 0	n:3900000
Cons ci ratio: 2.771858e+00	ci left: 6.491746e-09	ci right 1.428626e-06	k: 1	n:3900000
KS ci ratio: 2.771858e+00	ci left: 6.491746e-09	ci right 1.428626e-06	k: 1	n:3900000
NFE2L2   3900000 perm   6031 sec   (647 perm/sec)   p_kst 2.564103e-07   p_cons 2.564103e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.434470e-07	k: 0	n:3910000
Cons ci ratio: 2.771858e+00	ci left: 6.475143e-09	ci right 1.424972e-06	k: 1	n:3910000
KS ci ratio: 2.771858e+00	ci left: 6.475143e-09	ci right 1.424972e-06	k: 1	n:3910000
NFE2L2   3910000 perm   6060 sec   (645 perm/sec)   p_kst 2.557545e-07   p_cons 2.557545e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.410402e-07	k: 0	n:3920000
Cons ci ratio: 2.771858e+00	ci left: 6.458624e-09	ci right 1.421337e-06	k: 1	n:3920000
KS ci ratio: 2.771858e+00	ci left: 6.458624e-09	ci right 1.421337e-06	k: 1	n:3920000
NFE2L2   3920000 perm   6089 sec   (644 perm/sec)   p_kst 2.551020e-07   p_cons 2.551020e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.386457e-07	k: 0	n:3930000
Cons ci ratio: 2.771858e+00	ci left: 6.442190e-09	ci right 1.417720e-06	k: 1	n:3930000
KS ci ratio: 2.771858e+00	ci left: 6.442190e-09	ci right 1.417720e-06	k: 1	n:3930000
NFE2L2   3930000 perm   6118 sec   (642 perm/sec)   p_kst 2.544529e-07   p_cons 2.544529e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.362634e-07	k: 0	n:3940000
Cons ci ratio: 2.771858e+00	ci left: 6.425839e-09	ci right 1.414122e-06	k: 1	n:3940000
KS ci ratio: 2.771858e+00	ci left: 6.425839e-09	ci right 1.414122e-06	k: 1	n:3940000
NFE2L2   3940000 perm   6147 sec   (641 perm/sec)   p_kst 2.538071e-07   p_cons 2.538071e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.338931e-07	k: 0	n:3950000
Cons ci ratio: 2.771858e+00	ci left: 6.409572e-09	ci right 1.410542e-06	k: 1	n:3950000
KS ci ratio: 2.771858e+00	ci left: 6.409572e-09	ci right 1.410542e-06	k: 1	n:3950000
NFE2L2   3950000 perm   6177 sec   (640 perm/sec)   p_kst 2.531646e-07   p_cons 2.531646e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.315348e-07	k: 0	n:3960000
Cons ci ratio: 2.771858e+00	ci left: 6.393386e-09	ci right 1.406980e-06	k: 1	n:3960000
KS ci ratio: 2.771858e+00	ci left: 6.393386e-09	ci right 1.406980e-06	k: 1	n:3960000
NFE2L2   3960000 perm   6206 sec   (638 perm/sec)   p_kst 2.525253e-07   p_cons 2.525253e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.291883e-07	k: 0	n:3970000
Cons ci ratio: 2.771858e+00	ci left: 6.377281e-09	ci right 1.403436e-06	k: 1	n:3970000
KS ci ratio: 2.771858e+00	ci left: 6.377281e-09	ci right 1.403436e-06	k: 1	n:3970000
NFE2L2   3970000 perm   6235 sec   (637 perm/sec)   p_kst 2.518892e-07   p_cons 2.518892e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.268537e-07	k: 0	n:3980000
Cons ci ratio: 2.771858e+00	ci left: 6.361258e-09	ci right 1.399910e-06	k: 1	n:3980000
KS ci ratio: 2.771858e+00	ci left: 6.361258e-09	ci right 1.399910e-06	k: 1	n:3980000
NFE2L2   3980000 perm   6264 sec   (635 perm/sec)   p_kst 2.512563e-07   p_cons 2.512563e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.245308e-07	k: 0	n:3990000
Cons ci ratio: 2.771858e+00	ci left: 6.345315e-09	ci right 1.396401e-06	k: 1	n:3990000
KS ci ratio: 2.771858e+00	ci left: 6.345315e-09	ci right 1.396401e-06	k: 1	n:3990000
NFE2L2   3990000 perm   6293 sec   (634 perm/sec)   p_kst 2.506266e-07   p_cons 2.506266e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.222194e-07	k: 0	n:4000000
Cons ci ratio: 2.771858e+00	ci left: 6.329452e-09	ci right 1.392910e-06	k: 1	n:4000000
KS ci ratio: 2.771858e+00	ci left: 6.329452e-09	ci right 1.392910e-06	k: 1	n:4000000
NFE2L2   4000000 perm   6323 sec   (633 perm/sec)   p_kst 2.500000e-07   p_cons 2.500000e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.199196e-07	k: 0	n:4010000
Cons ci ratio: 2.771858e+00	ci left: 6.313668e-09	ci right 1.389436e-06	k: 1	n:4010000
KS ci ratio: 2.771858e+00	ci left: 6.313668e-09	ci right 1.389436e-06	k: 1	n:4010000
NFE2L2   4010000 perm   6352 sec   (631 perm/sec)   p_kst 2.493766e-07   p_cons 2.493766e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.176313e-07	k: 0	n:4020000
Cons ci ratio: 2.771858e+00	ci left: 6.297962e-09	ci right 1.385980e-06	k: 1	n:4020000
KS ci ratio: 2.771858e+00	ci left: 6.297962e-09	ci right 1.385980e-06	k: 1	n:4020000
NFE2L2   4020000 perm   6382 sec   (630 perm/sec)   p_kst 2.487562e-07   p_cons 2.487562e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.153543e-07	k: 0	n:4030000
Cons ci ratio: 2.771858e+00	ci left: 6.282334e-09	ci right 1.382541e-06	k: 1	n:4030000
KS ci ratio: 2.771858e+00	ci left: 6.282334e-09	ci right 1.382541e-06	k: 1	n:4030000
NFE2L2   4030000 perm   6411 sec   (629 perm/sec)   p_kst 2.481390e-07   p_cons 2.481390e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.130886e-07	k: 0	n:4040000
Cons ci ratio: 2.771858e+00	ci left: 6.266784e-09	ci right 1.379119e-06	k: 1	n:4040000
KS ci ratio: 2.771858e+00	ci left: 6.266784e-09	ci right 1.379119e-06	k: 1	n:4040000
NFE2L2   4040000 perm   6440 sec   (627 perm/sec)   p_kst 2.475248e-07   p_cons 2.475248e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.108340e-07	k: 0	n:4050000
Cons ci ratio: 2.771858e+00	ci left: 6.251311e-09	ci right 1.375714e-06	k: 1	n:4050000
KS ci ratio: 2.771858e+00	ci left: 6.251311e-09	ci right 1.375714e-06	k: 1	n:4050000
NFE2L2   4050000 perm   6470 sec   (626 perm/sec)   p_kst 2.469136e-07   p_cons 2.469136e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.085906e-07	k: 0	n:4060000
Cons ci ratio: 2.771858e+00	ci left: 6.235913e-09	ci right 1.372325e-06	k: 1	n:4060000
KS ci ratio: 2.771858e+00	ci left: 6.235913e-09	ci right 1.372325e-06	k: 1	n:4060000
NFE2L2   4060000 perm   6501 sec   (625 perm/sec)   p_kst 2.463054e-07   p_cons 2.463054e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.063582e-07	k: 0	n:4070000
Cons ci ratio: 2.771858e+00	ci left: 6.220592e-09	ci right 1.368953e-06	k: 1	n:4070000
KS ci ratio: 2.771858e+00	ci left: 6.220592e-09	ci right 1.368953e-06	k: 1	n:4070000
NFE2L2   4070000 perm   6531 sec   (623 perm/sec)   p_kst 2.457002e-07   p_cons 2.457002e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.041367e-07	k: 0	n:4080000
Cons ci ratio: 2.771858e+00	ci left: 6.205345e-09	ci right 1.365598e-06	k: 1	n:4080000
KS ci ratio: 2.771858e+00	ci left: 6.205345e-09	ci right 1.365598e-06	k: 1	n:4080000
NFE2L2   4080000 perm   6561 sec   (622 perm/sec)   p_kst 2.450980e-07   p_cons 2.450980e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.019261e-07	k: 0	n:4090000
Cons ci ratio: 2.771858e+00	ci left: 6.190173e-09	ci right 1.362259e-06	k: 1	n:4090000
KS ci ratio: 2.771858e+00	ci left: 6.190173e-09	ci right 1.362259e-06	k: 1	n:4090000
NFE2L2   4090000 perm   6591 sec   (621 perm/sec)   p_kst 2.444988e-07   p_cons 2.444988e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.997263e-07	k: 0	n:4100000
Cons ci ratio: 2.771858e+00	ci left: 6.175075e-09	ci right 1.358937e-06	k: 1	n:4100000
KS ci ratio: 2.771858e+00	ci left: 6.175075e-09	ci right 1.358937e-06	k: 1	n:4100000
NFE2L2   4100000 perm   6621 sec   (619 perm/sec)   p_kst 2.439024e-07   p_cons 2.439024e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.975372e-07	k: 0	n:4110000
Cons ci ratio: 2.771858e+00	ci left: 6.160051e-09	ci right 1.355630e-06	k: 1	n:4110000
KS ci ratio: 2.771858e+00	ci left: 6.160051e-09	ci right 1.355630e-06	k: 1	n:4110000
NFE2L2   4110000 perm   6651 sec   (618 perm/sec)   p_kst 2.433090e-07   p_cons 2.433090e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.953587e-07	k: 0	n:4120000
Cons ci ratio: 2.771858e+00	ci left: 6.145099e-09	ci right 1.352340e-06	k: 1	n:4120000
KS ci ratio: 2.771858e+00	ci left: 6.145099e-09	ci right 1.352340e-06	k: 1	n:4120000
NFE2L2   4120000 perm   6681 sec   (617 perm/sec)   p_kst 2.427184e-07   p_cons 2.427184e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.931908e-07	k: 0	n:4130000
Cons ci ratio: 2.771858e+00	ci left: 6.130220e-09	ci right 1.349065e-06	k: 1	n:4130000
KS ci ratio: 2.771858e+00	ci left: 6.130220e-09	ci right 1.349065e-06	k: 1	n:4130000
NFE2L2   4130000 perm   6711 sec   (615 perm/sec)   p_kst 2.421308e-07   p_cons 2.421308e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.910333e-07	k: 0	n:4140000
Cons ci ratio: 2.771858e+00	ci left: 6.115413e-09	ci right 1.345807e-06	k: 1	n:4140000
KS ci ratio: 2.771858e+00	ci left: 6.115413e-09	ci right 1.345807e-06	k: 1	n:4140000
NFE2L2   4140000 perm   6742 sec   (614 perm/sec)   p_kst 2.415459e-07   p_cons 2.415459e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.888862e-07	k: 0	n:4150000
Cons ci ratio: 2.771858e+00	ci left: 6.100677e-09	ci right 1.342564e-06	k: 1	n:4150000
KS ci ratio: 2.771858e+00	ci left: 6.100677e-09	ci right 1.342564e-06	k: 1	n:4150000
NFE2L2   4150000 perm   6772 sec   (613 perm/sec)   p_kst 2.409639e-07   p_cons 2.409639e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.867495e-07	k: 0	n:4160000
Cons ci ratio: 2.771858e+00	ci left: 6.086011e-09	ci right 1.339337e-06	k: 1	n:4160000
KS ci ratio: 2.771858e+00	ci left: 6.086011e-09	ci right 1.339337e-06	k: 1	n:4160000
NFE2L2   4160000 perm   6803 sec   (612 perm/sec)   p_kst 2.403846e-07   p_cons 2.403846e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.846230e-07	k: 0	n:4170000
Cons ci ratio: 2.771858e+00	ci left: 6.071417e-09	ci right 1.336125e-06	k: 1	n:4170000
KS ci ratio: 2.771858e+00	ci left: 6.071417e-09	ci right 1.336125e-06	k: 1	n:4170000
NFE2L2   4170000 perm   6833 sec   (610 perm/sec)   p_kst 2.398082e-07   p_cons 2.398082e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.825067e-07	k: 0	n:4180000
Cons ci ratio: 2.771858e+00	ci left: 6.056892e-09	ci right 1.332928e-06	k: 1	n:4180000
KS ci ratio: 2.771858e+00	ci left: 6.056892e-09	ci right 1.332928e-06	k: 1	n:4180000
NFE2L2   4180000 perm   6864 sec   (609 perm/sec)   p_kst 2.392344e-07   p_cons 2.392344e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.804004e-07	k: 0	n:4190000
Cons ci ratio: 2.771858e+00	ci left: 6.042436e-09	ci right 1.329747e-06	k: 1	n:4190000
KS ci ratio: 2.771858e+00	ci left: 6.042436e-09	ci right 1.329747e-06	k: 1	n:4190000
NFE2L2   4190000 perm   6894 sec   (608 perm/sec)   p_kst 2.386635e-07   p_cons 2.386635e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.783042e-07	k: 0	n:4200000
Cons ci ratio: 2.771858e+00	ci left: 6.028049e-09	ci right 1.326581e-06	k: 1	n:4200000
KS ci ratio: 2.771858e+00	ci left: 6.028049e-09	ci right 1.326581e-06	k: 1	n:4200000
NFE2L2   4200000 perm   6925 sec   (607 perm/sec)   p_kst 2.380952e-07   p_cons 2.380952e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.762180e-07	k: 0	n:4210000
Cons ci ratio: 2.771858e+00	ci left: 6.013731e-09	ci right 1.323430e-06	k: 1	n:4210000
KS ci ratio: 2.771858e+00	ci left: 6.013731e-09	ci right 1.323430e-06	k: 1	n:4210000
NFE2L2   4210000 perm   6956 sec   (605 perm/sec)   p_kst 2.375297e-07   p_cons 2.375297e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.741417e-07	k: 0	n:4220000
Cons ci ratio: 2.771858e+00	ci left: 5.999481e-09	ci right 1.320294e-06	k: 1	n:4220000
KS ci ratio: 2.771858e+00	ci left: 5.999481e-09	ci right 1.320294e-06	k: 1	n:4220000
NFE2L2   4220000 perm   6987 sec   (604 perm/sec)   p_kst 2.369668e-07   p_cons 2.369668e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.720751e-07	k: 0	n:4230000
Cons ci ratio: 2.771858e+00	ci left: 5.985298e-09	ci right 1.317173e-06	k: 1	n:4230000
KS ci ratio: 2.771858e+00	ci left: 5.985298e-09	ci right 1.317173e-06	k: 1	n:4230000
NFE2L2   4230000 perm   7018 sec   (603 perm/sec)   p_kst 2.364066e-07   p_cons 2.364066e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.700184e-07	k: 0	n:4240000
Cons ci ratio: 2.771858e+00	ci left: 5.971181e-09	ci right 1.314066e-06	k: 1	n:4240000
KS ci ratio: 2.771858e+00	ci left: 5.971181e-09	ci right 1.314066e-06	k: 1	n:4240000
NFE2L2   4240000 perm   7048 sec   (602 perm/sec)   p_kst 2.358491e-07   p_cons 2.358491e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.679713e-07	k: 0	n:4250000
Cons ci ratio: 2.771858e+00	ci left: 5.957131e-09	ci right 1.310974e-06	k: 1	n:4250000
KS ci ratio: 2.771858e+00	ci left: 5.957131e-09	ci right 1.310974e-06	k: 1	n:4250000
NFE2L2   4250000 perm   7079 sec   (600 perm/sec)   p_kst 2.352941e-07   p_cons 2.352941e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.659338e-07	k: 0	n:4260000
Cons ci ratio: 2.771858e+00	ci left: 5.943147e-09	ci right 1.307897e-06	k: 1	n:4260000
KS ci ratio: 2.771858e+00	ci left: 5.943147e-09	ci right 1.307897e-06	k: 1	n:4260000
NFE2L2   4260000 perm   7110 sec   (599 perm/sec)   p_kst 2.347418e-07   p_cons 2.347418e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.639058e-07	k: 0	n:4270000
Cons ci ratio: 2.771858e+00	ci left: 5.929229e-09	ci right 1.304834e-06	k: 1	n:4270000
KS ci ratio: 2.771858e+00	ci left: 5.929229e-09	ci right 1.304834e-06	k: 1	n:4270000
NFE2L2   4270000 perm   7141 sec   (598 perm/sec)   p_kst 2.341920e-07   p_cons 2.341920e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.618874e-07	k: 0	n:4280000
Cons ci ratio: 2.771858e+00	ci left: 5.915376e-09	ci right 1.301785e-06	k: 1	n:4280000
KS ci ratio: 2.771858e+00	ci left: 5.915376e-09	ci right 1.301785e-06	k: 1	n:4280000
NFE2L2   4280000 perm   7172 sec   (597 perm/sec)   p_kst 2.336449e-07   p_cons 2.336449e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.598783e-07	k: 0	n:4290000
Cons ci ratio: 2.771858e+00	ci left: 5.901587e-09	ci right 1.298751e-06	k: 1	n:4290000
KS ci ratio: 2.771858e+00	ci left: 5.901587e-09	ci right 1.298751e-06	k: 1	n:4290000
NFE2L2   4290000 perm   7203 sec   (596 perm/sec)   p_kst 2.331002e-07   p_cons 2.331002e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.578786e-07	k: 0	n:4300000
Cons ci ratio: 2.771858e+00	ci left: 5.887862e-09	ci right 1.295730e-06	k: 1	n:4300000
KS ci ratio: 2.771858e+00	ci left: 5.887862e-09	ci right 1.295730e-06	k: 1	n:4300000
NFE2L2   4300000 perm   7234 sec   (594 perm/sec)   p_kst 2.325581e-07   p_cons 2.325581e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.558881e-07	k: 0	n:4310000
Cons ci ratio: 2.771858e+00	ci left: 5.874201e-09	ci right 1.292724e-06	k: 1	n:4310000
KS ci ratio: 2.771858e+00	ci left: 5.874201e-09	ci right 1.292724e-06	k: 1	n:4310000
NFE2L2   4310000 perm   7266 sec   (593 perm/sec)   p_kst 2.320186e-07   p_cons 2.320186e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.539069e-07	k: 0	n:4320000
Cons ci ratio: 2.771858e+00	ci left: 5.860604e-09	ci right 1.289732e-06	k: 1	n:4320000
KS ci ratio: 2.771858e+00	ci left: 5.860604e-09	ci right 1.289732e-06	k: 1	n:4320000
NFE2L2   4320000 perm   7297 sec   (592 perm/sec)   p_kst 2.314815e-07   p_cons 2.314815e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.519348e-07	k: 0	n:4330000
Cons ci ratio: 2.771858e+00	ci left: 5.847069e-09	ci right 1.286753e-06	k: 1	n:4330000
KS ci ratio: 2.771858e+00	ci left: 5.847069e-09	ci right 1.286753e-06	k: 1	n:4330000
NFE2L2   4330000 perm   7329 sec   (591 perm/sec)   p_kst 2.309469e-07   p_cons 2.309469e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.499719e-07	k: 0	n:4340000
Cons ci ratio: 2.771858e+00	ci left: 5.833596e-09	ci right 1.283788e-06	k: 1	n:4340000
KS ci ratio: 2.771858e+00	ci left: 5.833596e-09	ci right 1.283788e-06	k: 1	n:4340000
NFE2L2   4340000 perm   7361 sec   (590 perm/sec)   p_kst 2.304147e-07   p_cons 2.304147e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.480179e-07	k: 0	n:4350000
Cons ci ratio: 2.771858e+00	ci left: 5.820186e-09	ci right 1.280837e-06	k: 1	n:4350000
KS ci ratio: 2.771858e+00	ci left: 5.820186e-09	ci right 1.280837e-06	k: 1	n:4350000
NFE2L2   4350000 perm   7393 sec   (588 perm/sec)   p_kst 2.298851e-07   p_cons 2.298851e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.460729e-07	k: 0	n:4360000
Cons ci ratio: 2.771858e+00	ci left: 5.806837e-09	ci right 1.277899e-06	k: 1	n:4360000
KS ci ratio: 2.771858e+00	ci left: 5.806837e-09	ci right 1.277899e-06	k: 1	n:4360000
NFE2L2   4360000 perm   7424 sec   (587 perm/sec)   p_kst 2.293578e-07   p_cons 2.293578e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.441368e-07	k: 0	n:4370000
Cons ci ratio: 2.771858e+00	ci left: 5.793549e-09	ci right 1.274975e-06	k: 1	n:4370000
KS ci ratio: 2.771858e+00	ci left: 5.793549e-09	ci right 1.274975e-06	k: 1	n:4370000
NFE2L2   4370000 perm   7456 sec   (586 perm/sec)   p_kst 2.288330e-07   p_cons 2.288330e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.422096e-07	k: 0	n:4380000
Cons ci ratio: 2.771858e+00	ci left: 5.780321e-09	ci right 1.272064e-06	k: 1	n:4380000
KS ci ratio: 2.771858e+00	ci left: 5.780321e-09	ci right 1.272064e-06	k: 1	n:4380000
NFE2L2   4380000 perm   7488 sec   (585 perm/sec)   p_kst 2.283105e-07   p_cons 2.283105e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.402911e-07	k: 0	n:4390000
Cons ci ratio: 2.771858e+00	ci left: 5.767154e-09	ci right 1.269166e-06	k: 1	n:4390000
KS ci ratio: 2.771858e+00	ci left: 5.767154e-09	ci right 1.269166e-06	k: 1	n:4390000
NFE2L2   4390000 perm   7520 sec   (584 perm/sec)   p_kst 2.277904e-07   p_cons 2.277904e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.383813e-07	k: 0	n:4400000
Cons ci ratio: 2.771858e+00	ci left: 5.754047e-09	ci right 1.266282e-06	k: 1	n:4400000
KS ci ratio: 2.771858e+00	ci left: 5.754047e-09	ci right 1.266282e-06	k: 1	n:4400000
NFE2L2   4400000 perm   7552 sec   (583 perm/sec)   p_kst 2.272727e-07   p_cons 2.272727e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.364803e-07	k: 0	n:4410000
Cons ci ratio: 2.771858e+00	ci left: 5.741000e-09	ci right 1.263411e-06	k: 1	n:4410000
KS ci ratio: 2.771858e+00	ci left: 5.741000e-09	ci right 1.263411e-06	k: 1	n:4410000
NFE2L2   4410000 perm   7585 sec   (581 perm/sec)   p_kst 2.267574e-07   p_cons 2.267574e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.345878e-07	k: 0	n:4420000
Cons ci ratio: 2.771858e+00	ci left: 5.728011e-09	ci right 1.260552e-06	k: 1	n:4420000
KS ci ratio: 2.771858e+00	ci left: 5.728011e-09	ci right 1.260552e-06	k: 1	n:4420000
NFE2L2   4420000 perm   7617 sec   (580 perm/sec)   p_kst 2.262443e-07   p_cons 2.262443e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.327038e-07	k: 0	n:4430000
Cons ci ratio: 2.771858e+00	ci left: 5.715081e-09	ci right 1.257707e-06	k: 1	n:4430000
KS ci ratio: 2.771858e+00	ci left: 5.715081e-09	ci right 1.257707e-06	k: 1	n:4430000
NFE2L2   4430000 perm   7649 sec   (579 perm/sec)   p_kst 2.257336e-07   p_cons 2.257336e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.308284e-07	k: 0	n:4440000
Cons ci ratio: 2.771858e+00	ci left: 5.702209e-09	ci right 1.254874e-06	k: 1	n:4440000
KS ci ratio: 2.771858e+00	ci left: 5.702209e-09	ci right 1.254874e-06	k: 1	n:4440000
NFE2L2   4440000 perm   7681 sec   (578 perm/sec)   p_kst 2.252252e-07   p_cons 2.252252e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.289613e-07	k: 0	n:4450000
Cons ci ratio: 2.771858e+00	ci left: 5.689395e-09	ci right 1.252054e-06	k: 1	n:4450000
KS ci ratio: 2.771858e+00	ci left: 5.689395e-09	ci right 1.252054e-06	k: 1	n:4450000
NFE2L2   4450000 perm   7714 sec   (577 perm/sec)   p_kst 2.247191e-07   p_cons 2.247191e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.271027e-07	k: 0	n:4460000
Cons ci ratio: 2.771858e+00	ci left: 5.676638e-09	ci right 1.249247e-06	k: 1	n:4460000
KS ci ratio: 2.771858e+00	ci left: 5.676638e-09	ci right 1.249247e-06	k: 1	n:4460000
NFE2L2   4460000 perm   7746 sec   (576 perm/sec)   p_kst 2.242152e-07   p_cons 2.242152e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.252523e-07	k: 0	n:4470000
Cons ci ratio: 2.771858e+00	ci left: 5.663939e-09	ci right 1.246452e-06	k: 1	n:4470000
KS ci ratio: 2.771858e+00	ci left: 5.663939e-09	ci right 1.246452e-06	k: 1	n:4470000
NFE2L2   4470000 perm   7779 sec   (575 perm/sec)   p_kst 2.237136e-07   p_cons 2.237136e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.234103e-07	k: 0	n:4480000
Cons ci ratio: 2.771858e+00	ci left: 5.651297e-09	ci right 1.243670e-06	k: 1	n:4480000
KS ci ratio: 2.771858e+00	ci left: 5.651297e-09	ci right 1.243670e-06	k: 1	n:4480000
NFE2L2   4480000 perm   7811 sec   (574 perm/sec)   p_kst 2.232143e-07   p_cons 2.232143e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.215764e-07	k: 0	n:4490000
Cons ci ratio: 2.771858e+00	ci left: 5.638710e-09	ci right 1.240900e-06	k: 1	n:4490000
KS ci ratio: 2.771858e+00	ci left: 5.638710e-09	ci right 1.240900e-06	k: 1	n:4490000
NFE2L2   4490000 perm   7844 sec   (572 perm/sec)   p_kst 2.227171e-07   p_cons 2.227171e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.197507e-07	k: 0	n:4500000
Cons ci ratio: 2.771858e+00	ci left: 5.626179e-09	ci right 1.238142e-06	k: 1	n:4500000
KS ci ratio: 2.771858e+00	ci left: 5.626179e-09	ci right 1.238142e-06	k: 1	n:4500000
NFE2L2   4500000 perm   7877 sec   (571 perm/sec)   p_kst 2.222222e-07   p_cons 2.222222e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.179330e-07	k: 0	n:4510000
Cons ci ratio: 2.771858e+00	ci left: 5.613705e-09	ci right 1.235397e-06	k: 1	n:4510000
KS ci ratio: 2.771858e+00	ci left: 5.613705e-09	ci right 1.235397e-06	k: 1	n:4510000
NFE2L2   4510000 perm   7909 sec   (570 perm/sec)   p_kst 2.217295e-07   p_cons 2.217295e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.161234e-07	k: 0	n:4520000
Cons ci ratio: 2.771858e+00	ci left: 5.601285e-09	ci right 1.232664e-06	k: 1	n:4520000
KS ci ratio: 2.771858e+00	ci left: 5.601285e-09	ci right 1.232664e-06	k: 1	n:4520000
NFE2L2   4520000 perm   7942 sec   (569 perm/sec)   p_kst 2.212389e-07   p_cons 2.212389e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.143218e-07	k: 0	n:4530000
Cons ci ratio: 2.771858e+00	ci left: 5.588920e-09	ci right 1.229943e-06	k: 1	n:4530000
KS ci ratio: 2.771858e+00	ci left: 5.588920e-09	ci right 1.229943e-06	k: 1	n:4530000
NFE2L2   4530000 perm   7976 sec   (568 perm/sec)   p_kst 2.207506e-07   p_cons 2.207506e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.125282e-07	k: 0	n:4540000
Cons ci ratio: 2.771858e+00	ci left: 5.576610e-09	ci right 1.227234e-06	k: 1	n:4540000
KS ci ratio: 2.771858e+00	ci left: 5.576610e-09	ci right 1.227234e-06	k: 1	n:4540000
NFE2L2   4540000 perm   8009 sec   (567 perm/sec)   p_kst 2.202643e-07   p_cons 2.202643e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.107424e-07	k: 0	n:4550000
Cons ci ratio: 2.771858e+00	ci left: 5.564354e-09	ci right 1.224536e-06	k: 1	n:4550000
KS ci ratio: 2.771858e+00	ci left: 5.564354e-09	ci right 1.224536e-06	k: 1	n:4550000
NFE2L2   4550000 perm   8042 sec   (566 perm/sec)   p_kst 2.197802e-07   p_cons 2.197802e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.089645e-07	k: 0	n:4560000
Cons ci ratio: 2.771858e+00	ci left: 5.552151e-09	ci right 1.221851e-06	k: 1	n:4560000
KS ci ratio: 2.771858e+00	ci left: 5.552151e-09	ci right 1.221851e-06	k: 1	n:4560000
NFE2L2   4560000 perm   8075 sec   (565 perm/sec)   p_kst 2.192982e-07   p_cons 2.192982e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.071943e-07	k: 0	n:4570000
Cons ci ratio: 2.771858e+00	ci left: 5.540002e-09	ci right 1.219177e-06	k: 1	n:4570000
KS ci ratio: 2.771858e+00	ci left: 5.540002e-09	ci right 1.219177e-06	k: 1	n:4570000
NFE2L2   4570000 perm   8108 sec   (564 perm/sec)   p_kst 2.188184e-07   p_cons 2.188184e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.054319e-07	k: 0	n:4580000
Cons ci ratio: 2.771858e+00	ci left: 5.527906e-09	ci right 1.216515e-06	k: 1	n:4580000
KS ci ratio: 2.771858e+00	ci left: 5.527906e-09	ci right 1.216515e-06	k: 1	n:4580000
NFE2L2   4580000 perm   8142 sec   (563 perm/sec)   p_kst 2.183406e-07   p_cons 2.183406e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.036771e-07	k: 0	n:4590000
Cons ci ratio: 2.771858e+00	ci left: 5.515862e-09	ci right 1.213865e-06	k: 1	n:4590000
KS ci ratio: 2.771858e+00	ci left: 5.515862e-09	ci right 1.213865e-06	k: 1	n:4590000
NFE2L2   4590000 perm   8175 sec   (561 perm/sec)   p_kst 2.178649e-07   p_cons 2.178649e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.019300e-07	k: 0	n:4600000
Cons ci ratio: 2.771858e+00	ci left: 5.503871e-09	ci right 1.211226e-06	k: 1	n:4600000
KS ci ratio: 2.771858e+00	ci left: 5.503871e-09	ci right 1.211226e-06	k: 1	n:4600000
NFE2L2   4600000 perm   8208 sec   (560 perm/sec)   p_kst 2.173913e-07   p_cons 2.173913e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.001904e-07	k: 0	n:4610000
Cons ci ratio: 2.771858e+00	ci left: 5.491932e-09	ci right 1.208599e-06	k: 1	n:4610000
KS ci ratio: 2.771858e+00	ci left: 5.491932e-09	ci right 1.208599e-06	k: 1	n:4610000
NFE2L2   4610000 perm   8242 sec   (559 perm/sec)   p_kst 2.169197e-07   p_cons 2.169197e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.984584e-07	k: 0	n:4620000
Cons ci ratio: 2.771858e+00	ci left: 5.480045e-09	ci right 1.205983e-06	k: 1	n:4620000
KS ci ratio: 2.771858e+00	ci left: 5.480045e-09	ci right 1.205983e-06	k: 1	n:4620000
NFE2L2   4620000 perm   8276 sec   (558 perm/sec)   p_kst 2.164502e-07   p_cons 2.164502e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.967339e-07	k: 0	n:4630000
Cons ci ratio: 2.771858e+00	ci left: 5.468209e-09	ci right 1.203378e-06	k: 1	n:4630000
KS ci ratio: 2.771858e+00	ci left: 5.468209e-09	ci right 1.203378e-06	k: 1	n:4630000
NFE2L2   4630000 perm   8309 sec   (557 perm/sec)   p_kst 2.159827e-07   p_cons 2.159827e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.950168e-07	k: 0	n:4640000
Cons ci ratio: 2.771858e+00	ci left: 5.456424e-09	ci right 1.200785e-06	k: 1	n:4640000
KS ci ratio: 2.771858e+00	ci left: 5.456424e-09	ci right 1.200785e-06	k: 1	n:4640000
NFE2L2   4640000 perm   8343 sec   (556 perm/sec)   p_kst 2.155172e-07   p_cons 2.155172e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.933071e-07	k: 0	n:4650000
Cons ci ratio: 2.771858e+00	ci left: 5.444690e-09	ci right 1.198202e-06	k: 1	n:4650000
KS ci ratio: 2.771858e+00	ci left: 5.444690e-09	ci right 1.198202e-06	k: 1	n:4650000
NFE2L2   4650000 perm   8377 sec   (555 perm/sec)   p_kst 2.150538e-07   p_cons 2.150538e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.916047e-07	k: 0	n:4660000
Cons ci ratio: 2.771858e+00	ci left: 5.433006e-09	ci right 1.195631e-06	k: 1	n:4660000
KS ci ratio: 2.771858e+00	ci left: 5.433006e-09	ci right 1.195631e-06	k: 1	n:4660000
NFE2L2   4660000 perm   8411 sec   (554 perm/sec)   p_kst 2.145923e-07   p_cons 2.145923e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.899096e-07	k: 0	n:4670000
Cons ci ratio: 2.771858e+00	ci left: 5.421372e-09	ci right 1.193071e-06	k: 1	n:4670000
KS ci ratio: 2.771858e+00	ci left: 5.421372e-09	ci right 1.193071e-06	k: 1	n:4670000
NFE2L2   4670000 perm   8445 sec   (553 perm/sec)   p_kst 2.141328e-07   p_cons 2.141328e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.882218e-07	k: 0	n:4680000
Cons ci ratio: 2.771858e+00	ci left: 5.409788e-09	ci right 1.190522e-06	k: 1	n:4680000
KS ci ratio: 2.771858e+00	ci left: 5.409788e-09	ci right 1.190522e-06	k: 1	n:4680000
NFE2L2   4680000 perm   8479 sec   (552 perm/sec)   p_kst 2.136752e-07   p_cons 2.136752e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.865412e-07	k: 0	n:4690000
Cons ci ratio: 2.771858e+00	ci left: 5.398253e-09	ci right 1.187983e-06	k: 1	n:4690000
KS ci ratio: 2.771858e+00	ci left: 5.398253e-09	ci right 1.187983e-06	k: 1	n:4690000
NFE2L2   4690000 perm   8512 sec   (551 perm/sec)   p_kst 2.132196e-07   p_cons 2.132196e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.848677e-07	k: 0	n:4700000
Cons ci ratio: 2.771858e+00	ci left: 5.386768e-09	ci right 1.185455e-06	k: 1	n:4700000
KS ci ratio: 2.771858e+00	ci left: 5.386768e-09	ci right 1.185455e-06	k: 1	n:4700000
NFE2L2   4700000 perm   8546 sec   (550 perm/sec)   p_kst 2.127660e-07   p_cons 2.127660e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.832013e-07	k: 0	n:4710000
Cons ci ratio: 2.771858e+00	ci left: 5.375331e-09	ci right 1.182939e-06	k: 1	n:4710000
KS ci ratio: 2.771858e+00	ci left: 5.375331e-09	ci right 1.182939e-06	k: 1	n:4710000
NFE2L2   4710000 perm   8580 sec   (549 perm/sec)   p_kst 2.123142e-07   p_cons 2.123142e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.815419e-07	k: 0	n:4720000
Cons ci ratio: 2.771858e+00	ci left: 5.363942e-09	ci right 1.180432e-06	k: 1	n:4720000
KS ci ratio: 2.771858e+00	ci left: 5.363942e-09	ci right 1.180432e-06	k: 1	n:4720000
NFE2L2   4720000 perm   8615 sec   (548 perm/sec)   p_kst 2.118644e-07   p_cons 2.118644e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.798896e-07	k: 0	n:4730000
Cons ci ratio: 2.771858e+00	ci left: 5.352602e-09	ci right 1.177937e-06	k: 1	n:4730000
KS ci ratio: 2.771858e+00	ci left: 5.352602e-09	ci right 1.177937e-06	k: 1	n:4730000
NFE2L2   4730000 perm   8649 sec   (547 perm/sec)   p_kst 2.114165e-07   p_cons 2.114165e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.782443e-07	k: 0	n:4740000
Cons ci ratio: 2.771858e+00	ci left: 5.341310e-09	ci right 1.175452e-06	k: 1	n:4740000
KS ci ratio: 2.771858e+00	ci left: 5.341310e-09	ci right 1.175452e-06	k: 1	n:4740000
NFE2L2   4740000 perm   8683 sec   (546 perm/sec)   p_kst 2.109705e-07   p_cons 2.109705e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.766059e-07	k: 0	n:4750000
Cons ci ratio: 2.771858e+00	ci left: 5.330065e-09	ci right 1.172977e-06	k: 1	n:4750000
KS ci ratio: 2.771858e+00	ci left: 5.330065e-09	ci right 1.172977e-06	k: 1	n:4750000
NFE2L2   4750000 perm   8717 sec   (545 perm/sec)   p_kst 2.105263e-07   p_cons 2.105263e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.749744e-07	k: 0	n:4760000
Cons ci ratio: 2.771858e+00	ci left: 5.318867e-09	ci right 1.170513e-06	k: 1	n:4760000
KS ci ratio: 2.771858e+00	ci left: 5.318867e-09	ci right 1.170513e-06	k: 1	n:4760000
NFE2L2   4760000 perm   8752 sec   (544 perm/sec)   p_kst 2.100840e-07   p_cons 2.100840e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.733497e-07	k: 0	n:4770000
Cons ci ratio: 2.771858e+00	ci left: 5.307716e-09	ci right 1.168059e-06	k: 1	n:4770000
KS ci ratio: 2.771858e+00	ci left: 5.307716e-09	ci right 1.168059e-06	k: 1	n:4770000
NFE2L2   4770000 perm   8786 sec   (543 perm/sec)   p_kst 2.096436e-07   p_cons 2.096436e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.717318e-07	k: 0	n:4780000
Cons ci ratio: 2.771858e+00	ci left: 5.296612e-09	ci right 1.165615e-06	k: 1	n:4780000
KS ci ratio: 2.771858e+00	ci left: 5.296612e-09	ci right 1.165615e-06	k: 1	n:4780000
NFE2L2   4780000 perm   8820 sec   (542 perm/sec)   p_kst 2.092050e-07   p_cons 2.092050e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.701207e-07	k: 0	n:4790000
Cons ci ratio: 2.771858e+00	ci left: 5.285555e-09	ci right 1.163182e-06	k: 1	n:4790000
KS ci ratio: 2.771858e+00	ci left: 5.285555e-09	ci right 1.163182e-06	k: 1	n:4790000
NFE2L2   4790000 perm   8855 sec   (541 perm/sec)   p_kst 2.087683e-07   p_cons 2.087683e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.685163e-07	k: 0	n:4800000
Cons ci ratio: 2.771858e+00	ci left: 5.274543e-09	ci right 1.160758e-06	k: 1	n:4800000
KS ci ratio: 2.771858e+00	ci left: 5.274543e-09	ci right 1.160758e-06	k: 1	n:4800000
NFE2L2   4800000 perm   8890 sec   (540 perm/sec)   p_kst 2.083333e-07   p_cons 2.083333e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.669185e-07	k: 0	n:4810000
Cons ci ratio: 2.771858e+00	ci left: 5.263578e-09	ci right 1.158345e-06	k: 1	n:4810000
KS ci ratio: 2.771858e+00	ci left: 5.263578e-09	ci right 1.158345e-06	k: 1	n:4810000
NFE2L2   4810000 perm   8925 sec   (539 perm/sec)   p_kst 2.079002e-07   p_cons 2.079002e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.653274e-07	k: 0	n:4820000
Cons ci ratio: 2.771858e+00	ci left: 5.252657e-09	ci right 1.155942e-06	k: 1	n:4820000
KS ci ratio: 2.771858e+00	ci left: 5.252657e-09	ci right 1.155942e-06	k: 1	n:4820000
NFE2L2   4820000 perm   8960 sec   (538 perm/sec)   p_kst 2.074689e-07   p_cons 2.074689e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.637429e-07	k: 0	n:4830000
Cons ci ratio: 2.771858e+00	ci left: 5.241782e-09	ci right 1.153549e-06	k: 1	n:4830000
KS ci ratio: 2.771858e+00	ci left: 5.241782e-09	ci right 1.153549e-06	k: 1	n:4830000
NFE2L2   4830000 perm   8995 sec   (537 perm/sec)   p_kst 2.070393e-07   p_cons 2.070393e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.621649e-07	k: 0	n:4840000
Cons ci ratio: 2.771858e+00	ci left: 5.230952e-09	ci right 1.151165e-06	k: 1	n:4840000
KS ci ratio: 2.771858e+00	ci left: 5.230952e-09	ci right 1.151165e-06	k: 1	n:4840000
NFE2L2   4840000 perm   9030 sec   (536 perm/sec)   p_kst 2.066116e-07   p_cons 2.066116e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.605934e-07	k: 0	n:4850000
Cons ci ratio: 2.771858e+00	ci left: 5.220167e-09	ci right 1.148792e-06	k: 1	n:4850000
KS ci ratio: 2.771858e+00	ci left: 5.220167e-09	ci right 1.148792e-06	k: 1	n:4850000
NFE2L2   4850000 perm   9065 sec   (535 perm/sec)   p_kst 2.061856e-07   p_cons 2.061856e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.590284e-07	k: 0	n:4860000
Cons ci ratio: 2.771858e+00	ci left: 5.209426e-09	ci right 1.146428e-06	k: 1	n:4860000
KS ci ratio: 2.771858e+00	ci left: 5.209426e-09	ci right 1.146428e-06	k: 1	n:4860000
NFE2L2   4860000 perm   9100 sec   (534 perm/sec)   p_kst 2.057613e-07   p_cons 2.057613e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.574698e-07	k: 0	n:4870000
Cons ci ratio: 2.771858e+00	ci left: 5.198729e-09	ci right 1.144074e-06	k: 1	n:4870000
KS ci ratio: 2.771858e+00	ci left: 5.198729e-09	ci right 1.144074e-06	k: 1	n:4870000
NFE2L2   4870000 perm   9135 sec   (533 perm/sec)   p_kst 2.053388e-07   p_cons 2.053388e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.559176e-07	k: 0	n:4880000
Cons ci ratio: 2.771858e+00	ci left: 5.188076e-09	ci right 1.141730e-06	k: 1	n:4880000
KS ci ratio: 2.771858e+00	ci left: 5.188076e-09	ci right 1.141730e-06	k: 1	n:4880000
NFE2L2   4880000 perm   9171 sec   (532 perm/sec)   p_kst 2.049180e-07   p_cons 2.049180e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.543718e-07	k: 0	n:4890000
Cons ci ratio: 2.771858e+00	ci left: 5.177466e-09	ci right 1.139395e-06	k: 1	n:4890000
KS ci ratio: 2.771858e+00	ci left: 5.177466e-09	ci right 1.139395e-06	k: 1	n:4890000
NFE2L2   4890000 perm   9206 sec   (531 perm/sec)   p_kst 2.044990e-07   p_cons 2.044990e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.528323e-07	k: 0	n:4900000
Cons ci ratio: 2.771858e+00	ci left: 5.166900e-09	ci right 1.137070e-06	k: 1	n:4900000
KS ci ratio: 2.771858e+00	ci left: 5.166900e-09	ci right 1.137070e-06	k: 1	n:4900000
NFE2L2   4900000 perm   9241 sec   (530 perm/sec)   p_kst 2.040816e-07   p_cons 2.040816e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.512990e-07	k: 0	n:4910000
Cons ci ratio: 2.771858e+00	ci left: 5.156376e-09	ci right 1.134754e-06	k: 1	n:4910000
KS ci ratio: 2.771858e+00	ci left: 5.156376e-09	ci right 1.134754e-06	k: 1	n:4910000
NFE2L2   4910000 perm   9277 sec   (529 perm/sec)   p_kst 2.036660e-07   p_cons 2.036660e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.497720e-07	k: 0	n:4920000
Cons ci ratio: 2.771858e+00	ci left: 5.145896e-09	ci right 1.132447e-06	k: 1	n:4920000
KS ci ratio: 2.771858e+00	ci left: 5.145896e-09	ci right 1.132447e-06	k: 1	n:4920000
NFE2L2   4920000 perm   9313 sec   (528 perm/sec)   p_kst 2.032520e-07   p_cons 2.032520e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.482511e-07	k: 0	n:4930000
Cons ci ratio: 2.771858e+00	ci left: 5.135458e-09	ci right 1.130150e-06	k: 1	n:4930000
KS ci ratio: 2.771858e+00	ci left: 5.135458e-09	ci right 1.130150e-06	k: 1	n:4930000
NFE2L2   4930000 perm   9348 sec   (527 perm/sec)   p_kst 2.028398e-07   p_cons 2.028398e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.467365e-07	k: 0	n:4940000
Cons ci ratio: 2.771858e+00	ci left: 5.125062e-09	ci right 1.127863e-06	k: 1	n:4940000
KS ci ratio: 2.771858e+00	ci left: 5.125062e-09	ci right 1.127863e-06	k: 1	n:4940000
NFE2L2   4940000 perm   9384 sec   (526 perm/sec)   p_kst 2.024291e-07   p_cons 2.024291e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.452279e-07	k: 0	n:4950000
Cons ci ratio: 2.771858e+00	ci left: 5.114709e-09	ci right 1.125584e-06	k: 1	n:4950000
KS ci ratio: 2.771858e+00	ci left: 5.114709e-09	ci right 1.125584e-06	k: 1	n:4950000
NFE2L2   4950000 perm   9419 sec   (526 perm/sec)   p_kst 2.020202e-07   p_cons 2.020202e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.437254e-07	k: 0	n:4960000
Cons ci ratio: 2.771858e+00	ci left: 5.104397e-09	ci right 1.123315e-06	k: 1	n:4960000
KS ci ratio: 2.771858e+00	ci left: 5.104397e-09	ci right 1.123315e-06	k: 1	n:4960000
NFE2L2   4960000 perm   9455 sec   (525 perm/sec)   p_kst 2.016129e-07   p_cons 2.016129e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.422290e-07	k: 0	n:4970000
Cons ci ratio: 2.771858e+00	ci left: 5.094126e-09	ci right 1.121054e-06	k: 1	n:4970000
KS ci ratio: 2.771858e+00	ci left: 5.094126e-09	ci right 1.121054e-06	k: 1	n:4970000
NFE2L2   4970000 perm   9491 sec   (524 perm/sec)   p_kst 2.012072e-07   p_cons 2.012072e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.407386e-07	k: 0	n:4980000
Cons ci ratio: 2.771858e+00	ci left: 5.083897e-09	ci right 1.118803e-06	k: 1	n:4980000
KS ci ratio: 2.771858e+00	ci left: 5.083897e-09	ci right 1.118803e-06	k: 1	n:4980000
NFE2L2   4980000 perm   9527 sec   (523 perm/sec)   p_kst 2.008032e-07   p_cons 2.008032e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.392541e-07	k: 0	n:4990000
Cons ci ratio: 2.771858e+00	ci left: 5.073709e-09	ci right 1.116561e-06	k: 1	n:4990000
KS ci ratio: 2.771858e+00	ci left: 5.073709e-09	ci right 1.116561e-06	k: 1	n:4990000
NFE2L2   4990000 perm   9563 sec   (522 perm/sec)   p_kst 2.004008e-07   p_cons 2.004008e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.377756e-07	k: 0	n:5000000
Cons ci ratio: 2.771858e+00	ci left: 5.063562e-09	ci right 1.114328e-06	k: 1	n:5000000
KS ci ratio: 2.771858e+00	ci left: 5.063562e-09	ci right 1.114328e-06	k: 1	n:5000000
NFE2L2   5000000 perm   9599 sec   (521 perm/sec)   p_kst 2.000000e-07   p_cons 2.000000e-07   p_joint 0

Outputting figure to mutsig2_images.part000000000114/NFE2L2.28_1838_5000000_2e-07_2e-07_0.png
                gene_name: NFE2L2
               theta_stop: 3.9 
                    nperm: 5000000 
                     p_ks: 2.00e-07 
        ci_ks_bounds_left: 5.06e-09 
       ci_ks_bounds_right: 1.11e-06 
                   p_cons: 2.00e-07 
      ci_cons_bounds_left: 5.06e-09 
     ci_cons_bounds_right: 1.11e-06 
                  p_joint: 0 
     ci_joint_bounds_left: 0 
    ci_joint_bounds_right: 7.38e-07 

Current progress: 2 percent done.
NF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.740328e-02	ci left: 6.623971e-01	ci right 6.809028e-01	k: 6717	n:10000
Cons ci ratio: 3.218655e-03	ci left: 9.916107e-01	ci right 9.948920e-01	k: 9934	n:10000
KS ci ratio: 3.705039e-02	ci left: 5.182587e-01	ci right 5.379249e-01	k: 5281	n:10000
NF1   10000 perm   3 sec   (3637 perm/sec)   p_kst 5.281000e-01   p_cons 9.934000e-01   p_joint 6.717000e-01

Outputting figure to mutsig2_images.part000000000114/NF1.22_8813_10000_0.5281_0.9934_0.6717.png
                gene_name: NF1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 4 percent done.
NHS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.301240e-02	ci left: 8.947738e-01	ci right 9.065916e-01	k: 9008	n:10000
Cons ci ratio: 3.432174e-02	ci left: 5.562179e-01	ci right 5.757437e-01	k: 5660	n:10000
KS ci ratio: 1.831749e-02	ci left: 8.131401e-01	ci right 8.282726e-01	k: 8208	n:10000
NHS   10000 perm   2 sec   (4827 perm/sec)   p_kst 8.208000e-01   p_cons 5.660000e-01   p_joint 9.008000e-01

Outputting figure to mutsig2_images.part000000000114/NHS.10_5030_10000_0.8208_0.566_0.9008.png
                gene_name: NHS
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.91 

Current progress: 6 percent done.
NID2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.253245e-02	ci left: 5.823922e-01	ci right 6.017541e-01	k: 5921	n:10000
Cons ci ratio: 3.507522e-02	ci left: 5.454954e-01	ci right 5.650724e-01	k: 5553	n:10000
KS ci ratio: 5.242615e-02	ci left: 3.490931e-01	ci right 3.679893e-01	k: 3585	n:10000
NID2   10000 perm   2 sec   (5396 perm/sec)   p_kst 3.585000e-01   p_cons 5.553000e-01   p_joint 5.921000e-01

Outputting figure to mutsig2_images.part000000000114/NID2.10_4216_10000_0.3585_0.5553_0.5921.png
                gene_name: NID2
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 8 percent done.
NIN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.883829e-02	ci left: 8.046079e-01	ci right 8.200097e-01	k: 8124	n:10000
Cons ci ratio: 9.066260e-03	ci left: 9.448175e-01	ci right 9.535185e-01	k: 9493	n:10000
KS ci ratio: 3.136044e-02	ci left: 6.000581e-01	ci right 6.192779e-01	k: 6097	n:10000
NIN   10000 perm   2 sec   (4578 perm/sec)   p_kst 6.097000e-01   p_cons 9.493000e-01   p_joint 8.124000e-01

Outputting figure to mutsig2_images.part000000000114/NIN.10_6666_10000_0.6097_0.9493_0.8124.png
                gene_name: NIN
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 10 percent done.
NEUROD6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.514666e-02	ci left: 2.057986e-01	ci right 2.219684e-01	k: 2138	n:10000
Cons ci ratio: 3.368349e-02	ci left: 5.654409e-01	ci right 5.849153e-01	k: 5752	n:10000
KS ci ratio: 1.023114e-01	ci left: 1.214132e-01	ci right 1.346043e-01	k: 1279	n:10000
NEUROD6   10000 perm   2 sec   (6232 perm/sec)   p_kst 1.279000e-01   p_cons 5.752000e-01   p_joint 2.138000e-01

Joint ci ratio: 5.084557e-02	ci left: 2.232408e-01	ci right 2.349380e-01	k: 4581	n:20000
Cons ci ratio: 2.403436e-02	ci left: 5.639054e-01	ci right 5.776740e-01	k: 11416	n:20000
KS ci ratio: 6.992313e-02	ci left: 1.310312e-01	ci right 1.405750e-01	k: 2715	n:20000
NEUROD6   20000 perm   4 sec   (5538 perm/sec)   p_kst 1.357500e-01   p_cons 5.708000e-01   p_joint 2.290500e-01

Outputting figure to mutsig2_images.part000000000114/NEUROD6.8_1018_20000_0.13575_0.5708_0.22905.png
                gene_name: NEUROD6
               theta_stop: 0.070 
                    nperm: 20000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 12 percent done.
NINL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.761920e-02	ci left: 3.071901e-01	ci right 3.255170e-01	k: 3163	n:10000
Cons ci ratio: 4.191375e-02	ci left: 4.566832e-01	ci right 4.763364e-01	k: 4665	n:10000
KS ci ratio: 9.809198e-02	ci left: 1.309046e-01	ci right 1.445072e-01	k: 1376	n:10000
NINL   10000 perm   2 sec   (5464 perm/sec)   p_kst 1.376000e-01   p_cons 4.665000e-01   p_joint 3.163000e-01

Outputting figure to mutsig2_images.part000000000114/NINL.8_4241_10000_0.1376_0.4665_0.3163.png
                gene_name: NINL
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 14 percent done.
NIPBL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.394138e-02	ci left: 3.361759e-01	ci right 3.549142e-01	k: 3455	n:10000
Cons ci ratio: 7.894111e-02	ci left: 1.899330e-01	ci right 2.056434e-01	k: 1977	n:10000
KS ci ratio: 7.461446e-02	ci left: 2.081653e-01	ci right 2.244003e-01	k: 2162	n:10000
NIPBL   10000 perm   2 sec   (4338 perm/sec)   p_kst 2.162000e-01   p_cons 1.977000e-01   p_joint 3.455000e-01

Outputting figure to mutsig2_images.part000000000114/NIPBL.8_8644_10000_0.2162_0.1977_0.3455.png
                gene_name: NIPBL
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 16 percent done.
NFASC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.709916e-02	ci left: 1.974200e-01	ci right 2.133520e-01	k: 2053	n:10000
Cons ci ratio: 1.907267e-02	ci left: 8.007500e-01	ci right 8.162698e-01	k: 8086	n:10000
KS ci ratio: 1.598823e-01	ci left: 5.215064e-02	ci right 6.130972e-02	k: 566	n:10000
NFASC   10000 perm   2 sec   (5647 perm/sec)   p_kst 5.660000e-02   p_cons 8.086000e-01   p_joint 2.053000e-01

Joint ci ratio: 6.730742e-02	ci left: 1.400978e-01	ci right 1.499057e-01	k: 2899	n:20000
Cons ci ratio: 1.339454e-02	ci left: 8.052008e-01	ci right 8.161088e-01	k: 16214	n:20000
KS ci ratio: 1.136954e-01	ci left: 5.290189e-02	ci right 5.932793e-02	k: 1121	n:20000
NFASC   20000 perm   4 sec   (5029 perm/sec)   p_kst 5.605000e-02   p_cons 8.107000e-01   p_joint 1.449500e-01

Joint ci ratio: 6.377958e-02	ci left: 1.082552e-01	ci right 1.154202e-01	k: 3354	n:30000
Cons ci ratio: 1.103377e-02	ci left: 8.034630e-01	ci right 8.124107e-01	k: 24239	n:30000
KS ci ratio: 9.065570e-02	ci left: 5.600099e-02	ci right 6.135154e-02	k: 1759	n:30000
NFASC   30000 perm   6 sec   (4817 perm/sec)   p_kst 5.863333e-02   p_cons 8.079667e-01   p_joint 1.118000e-01

Outputting figure to mutsig2_images.part000000000114/NFASC.7_4248_30000_0.058633_0.80797_0.1118.png
                gene_name: NFASC
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.059 
        ci_ks_bounds_left: 0.056 
       ci_ks_bounds_right: 0.061 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 18 percent done.
NEURL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.452473e-02	ci left: 5.533113e-01	ci right 5.728519e-01	k: 5631	n:10000
KS ci ratio: 1.872701e-02	ci left: 8.064357e-01	ci right 8.217809e-01	k: 8142	n:10000
NEURL4   10000 perm   2 sec   (5269 perm/sec)   p_kst 8.142000e-01   p_cons 5.631000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000114/NEURL4.6_4805_10000_0.8142_0.5631_1.png
                gene_name: NEURL4
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 20 percent done.
NFATC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.176713e-02	ci left: 9.118323e-01	ci right 9.227232e-01	k: 9174	n:10000
Cons ci ratio: 2.448086e-02	ci left: 7.104810e-01	ci right 7.281911e-01	k: 7194	n:10000
KS ci ratio: 2.120044e-02	ci left: 7.653697e-01	ci right 7.818706e-01	k: 7737	n:10000
NFATC3   10000 perm   2 sec   (6187 perm/sec)   p_kst 7.737000e-01   p_cons 7.194000e-01   p_joint 9.174000e-01

Outputting figure to mutsig2_images.part000000000114/NFATC3.6_3498_10000_0.7737_0.7194_0.9174.png
                gene_name: NFATC3
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 22 percent done.
NEUROD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.498109e-02	ci left: 8.659064e-01	ci right 8.790757e-01	k: 8726	n:10000
KS ci ratio: 1.007556e-02	ci left: 9.331980e-01	ci right 9.427449e-01	k: 9381	n:10000
NEUROD4   10000 perm   1 sec   (8097 perm/sec)   p_kst 9.381000e-01   p_cons 8.726000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000114/NEUROD4.5_1000_10000_0.9381_0.8726_1.png
                gene_name: NEUROD4
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 24 percent done.
NFATC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.220110e-02	ci left: 4.532888e-01	ci right 4.729327e-01	k: 4631	n:10000
KS ci ratio: 1.932481e-02	ci left: 7.965889e-01	ci right 8.122334e-01	k: 8045	n:10000
NFATC2   10000 perm   2 sec   (6524 perm/sec)   p_kst 8.045000e-01   p_cons 4.631000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000114/NFATC2.4_2940_10000_0.8045_0.4631_1.png
                gene_name: NFATC2
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 27 percent done.
NFATC2IP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.514930e-02	ci left: 2.570620e-01	ci right 2.744747e-01	k: 2657	n:10000
Cons ci ratio: 2.543521e-02	ci left: 6.946419e-01	ci right 7.126393e-01	k: 7037	n:10000
KS ci ratio: 9.233604e-02	ci left: 1.456039e-01	ci right 1.597991e-01	k: 1526	n:10000
NFATC2IP   10000 perm   1 sec   (6957 perm/sec)   p_kst 1.526000e-01   p_cons 7.037000e-01   p_joint 2.657000e-01

Outputting figure to mutsig2_images.part000000000114/NFATC2IP.4_1292_10000_0.1526_0.7037_0.2657.png
                gene_name: NFATC2IP
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 29 percent done.
NFE2L3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.083148e-02	ci left: 1.498222e-01	ci right 1.641783e-01	k: 1569	n:10000
Cons ci ratio: 1.535246e-01	ci left: 5.648398e-02	ci right 6.597362e-02	k: 611	n:10000
KS ci ratio: 4.669845e-03	ci left: 9.836084e-01	ci right 9.883022e-01	k: 9861	n:10000
NFE2L3   10000 perm   2 sec   (6559 perm/sec)   p_kst 9.861000e-01   p_cons 6.110000e-02   p_joint 1.569000e-01

Joint ci ratio: 5.852753e-02	ci left: 1.778108e-01	ci right 1.885815e-01	k: 3663	n:20000
Cons ci ratio: 1.089404e-01	ci left: 5.747851e-02	ci right 6.414988e-02	k: 1215	n:20000
KS ci ratio: 3.500278e-03	ci left: 9.825327e-01	ci right 9.860245e-01	k: 19687	n:20000
NFE2L3   20000 perm   3 sec   (5819 perm/sec)   p_kst 9.843500e-01   p_cons 6.075000e-02   p_joint 1.831500e-01

Joint ci ratio: 4.702468e-02	ci left: 1.836255e-01	ci right 1.925017e-01	k: 5641	n:30000
Cons ci ratio: 8.730545e-02	ci left: 6.021111e-02	ci right 6.574056e-02	k: 1888	n:30000
KS ci ratio: 2.842633e-03	ci left: 9.830376e-01	ci right 9.858675e-01	k: 29535	n:30000
NFE2L3   30000 perm   5 sec   (5518 perm/sec)   p_kst 9.845000e-01   p_cons 6.293333e-02   p_joint 1.880333e-01

Outputting figure to mutsig2_images.part000000000114/NFE2L3.4_2101_30000_0.9845_0.062933_0.18803.png
                gene_name: NFE2L3
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.063 
      ci_cons_bounds_left: 0.060 
     ci_cons_bounds_right: 0.066 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 31 percent done.
NFKBIL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.067731e-02	ci left: 9.258557e-01	ci right 9.358915e-01	k: 9310	n:10000
KS ci ratio: 2.570989e-02	ci left: 6.901044e-01	ci right 7.081794e-01	k: 6992	n:10000
NFKBIL2   10000 perm   2 sec   (5918 perm/sec)   p_kst 6.992000e-01   p_cons 9.310000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000114/NFKBIL2.4_4241_10000_0.6992_0.931_1.png
                gene_name: NFKBIL2
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 33 percent done.
NIPAL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.145274e-02	ci left: 5.986524e-01	ci right 6.178845e-01	k: 6083	n:10000
Cons ci ratio: 3.911583e-02	ci left: 4.911511e-01	ci right 5.108483e-01	k: 5010	n:10000
KS ci ratio: 3.647465e-02	ci left: 5.260662e-01	ci right 5.457129e-01	k: 5359	n:10000
NIPAL4   10000 perm   1 sec   (7226 perm/sec)   p_kst 5.359000e-01   p_cons 5.010000e-01   p_joint 6.083000e-01

Outputting figure to mutsig2_images.part000000000114/NIPAL4.4_1425_10000_0.5359_0.501_0.6083.png
                gene_name: NIPAL4
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 35 percent done.
NETO2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.350688e-02	ci left: 7.267375e-01	ci right 7.441252e-01	k: 7355	n:10000
KS ci ratio: 1.284443e-02	ci left: 8.971340e-01	ci right 9.088300e-01	k: 9031	n:10000
NETO2   10000 perm   1 sec   (7111 perm/sec)   p_kst 9.031000e-01   p_cons 7.355000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000114/NETO2.3_1614_10000_0.9031_0.7355_1.png
                gene_name: NETO2
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 37 percent done.
NEUROG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.379690e-02	ci left: 7.218893e-01	ci right 7.393761e-01	k: 7307	n:10000
KS ci ratio: 1.430680e-02	ci left: 8.760270e-01	ci right 8.887493e-01	k: 8825	n:10000
NEUROG3   10000 perm   1 sec   (7796 perm/sec)   p_kst 8.825000e-01   p_cons 7.307000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000114/NEUROG3.3_649_10000_0.8825_0.7307_1.png
                gene_name: NEUROG3
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 39 percent done.
NFAT5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.926339e-02	ci left: 7.976037e-01	ci right 8.132180e-01	k: 8055	n:10000
Cons ci ratio: 1.049357e-02	ci left: 9.281291e-01	ci right 9.380168e-01	k: 9332	n:10000
KS ci ratio: 2.829633e-02	ci left: 6.480036e-01	ci right 6.667046e-01	k: 6574	n:10000
NFAT5   10000 perm   2 sec   (5683 perm/sec)   p_kst 6.574000e-01   p_cons 9.332000e-01   p_joint 8.055000e-01

Outputting figure to mutsig2_images.part000000000114/NFAT5.3_4706_10000_0.6574_0.9332_0.8055.png
                gene_name: NFAT5
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 41 percent done.
NFATC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.065557e-02	ci left: 4.718633e-01	ci right 4.915474e-01	k: 4817	n:10000
Cons ci ratio: 1.764788e-02	ci left: 8.240174e-01	ci right 8.387890e-01	k: 8315	n:10000
KS ci ratio: 6.003574e-02	ci left: 2.898383e-01	ci right 3.078790e-01	k: 2988	n:10000
NFATC1   10000 perm   1 sec   (6894 perm/sec)   p_kst 2.988000e-01   p_cons 8.315000e-01   p_joint 4.817000e-01

Outputting figure to mutsig2_images.part000000000114/NFATC1.3_3023_10000_0.2988_0.8315_0.4817.png
                gene_name: NFATC1
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 43 percent done.
NFIA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.492393e-02	ci left: 2.067847e-01	ci right 2.229817e-01	k: 2148	n:10000
Cons ci ratio: 1.831486e-01	ci left: 3.977673e-02	ci right 4.789171e-02	k: 437	n:10000
KS ci ratio: 5.332702e-02	ci left: 3.413419e-01	ci right 3.601452e-01	k: 3507	n:10000
NFIA   10000 perm   1 sec   (6893 perm/sec)   p_kst 3.507000e-01   p_cons 4.370000e-02   p_joint 2.148000e-01

Joint ci ratio: 7.200805e-02	ci left: 1.243836e-01	ci right 1.337245e-01	k: 2580	n:20000
Cons ci ratio: 1.328752e-01	ci left: 3.892294e-02	ci right 4.451129e-02	k: 833	n:20000
KS ci ratio: 3.743620e-02	ci left: 3.474189e-01	ci right 3.607236e-01	k: 7081	n:20000
NFIA   20000 perm   3 sec   (6091 perm/sec)   p_kst 3.540500e-01   p_cons 4.165000e-02   p_joint 1.290000e-01

Joint ci ratio: 3.869756e-02	ci left: 2.499095e-01	ci right 2.598047e-01	k: 7645	n:30000
Cons ci ratio: 1.069847e-01	ci left: 4.053731e-02	ci right 4.515175e-02	k: 1284	n:30000
KS ci ratio: 3.053980e-02	ci left: 3.490514e-01	ci right 3.599102e-01	k: 10634	n:30000
NFIA   30000 perm   5 sec   (5782 perm/sec)   p_kst 3.544667e-01   p_cons 4.280000e-02   p_joint 2.548333e-01

Joint ci ratio: 3.344414e-02	ci left: 2.513556e-01	ci right 2.599299e-01	k: 10225	n:40000
Cons ci ratio: 9.343317e-02	ci left: 4.017727e-02	ci right 4.413955e-02	k: 1685	n:40000
KS ci ratio: 2.641648e-02	ci left: 3.503337e-01	ci right 3.597373e-01	k: 14201	n:40000
NFIA   40000 perm   7 sec   (5593 perm/sec)   p_kst 3.550250e-01   p_cons 4.212500e-02   p_joint 2.556250e-01

Outputting figure to mutsig2_images.part000000000114/NFIA.3_1779_40000_0.35502_0.042125_0.25562.png
                gene_name: NFIA
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.042 
      ci_cons_bounds_left: 0.040 
     ci_cons_bounds_right: 0.044 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 45 percent done.
NFIL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.580454e-02	ci left: 1.364873e-01	ci right 1.503211e-01	k: 1433	n:10000
Cons ci ratio: 7.693422e-02	ci left: 1.981098e-01	ci right 2.140618e-01	k: 2060	n:10000
KS ci ratio: 1.170113e-01	ci left: 9.496613e-02	ci right 1.068675e-01	k: 1008	n:10000
NFIL3   10000 perm   1 sec   (7337 perm/sec)   p_kst 1.008000e-01   p_cons 2.060000e-01   p_joint 1.433000e-01

Joint ci ratio: 9.808669e-02	ci left: 7.031150e-02	ci right 7.761295e-02	k: 1478	n:20000
Cons ci ratio: 5.420267e-02	ci left: 2.016503e-01	ci right 2.129349e-01	k: 4145	n:20000
KS ci ratio: 8.043316e-02	ci left: 1.018644e-01	ci right 1.104505e-01	k: 2122	n:20000
NFIL3   20000 perm   3 sec   (6451 perm/sec)   p_kst 1.061000e-01   p_cons 2.072500e-01   p_joint 7.390000e-02

Outputting figure to mutsig2_images.part000000000114/NFIL3.3_1393_20000_0.1061_0.20725_0.0739.png
                gene_name: NFIL3
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.074 
     ci_joint_bounds_left: 0.070 
    ci_joint_bounds_right: 0.078 

Current progress: 47 percent done.
NFXL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.189849e-02	ci left: 9.100826e-01	ci right 9.210739e-01	k: 9157	n:10000
Cons ci ratio: 2.998038e-02	ci left: 6.213549e-01	ci right 6.403688e-01	k: 6309	n:10000
KS ci ratio: 2.664240e-02	ci left: 6.747853e-01	ci right 6.931075e-01	k: 6840	n:10000
NFXL1   10000 perm   2 sec   (6388 perm/sec)   p_kst 6.840000e-01   p_cons 6.309000e-01   p_joint 9.157000e-01

Outputting figure to mutsig2_images.part000000000114/NFXL1.3_2824_10000_0.684_0.6309_0.9157.png
                gene_name: NFXL1
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 49 percent done.
NGLY1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.058238e-02	ci left: 4.727624e-01	ci right 4.924478e-01	k: 4826	n:10000
Cons ci ratio: 3.606605e-02	ci left: 5.316731e-01	ci right 5.513027e-01	k: 5415	n:10000
KS ci ratio: 5.307046e-02	ci left: 3.435278e-01	ci right 3.623579e-01	k: 3529	n:10000
NGLY1   10000 perm   1 sec   (7414 perm/sec)   p_kst 3.529000e-01   p_cons 5.415000e-01   p_joint 4.826000e-01

Outputting figure to mutsig2_images.part000000000114/NGLY1.3_2118_10000_0.3529_0.5415_0.4826.png
                gene_name: NGLY1
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 51 percent done.
NIF3L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.706525e-02	ci left: 5.180585e-01	ci right 5.377252e-01	k: 5279	n:10000
Cons ci ratio: 7.969522e-02	ci left: 1.869789e-01	ci right 2.025993e-01	k: 1947	n:10000
KS ci ratio: 3.628446e-02	ci left: 5.286693e-01	ci right 5.483083e-01	k: 5385	n:10000
NIF3L1   10000 perm   1 sec   (7445 perm/sec)   p_kst 5.385000e-01   p_cons 1.947000e-01   p_joint 5.279000e-01

Outputting figure to mutsig2_images.part000000000114/NIF3L1.3_1158_10000_0.5385_0.1947_0.5279.png
                gene_name: NIF3L1
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 53 percent done.
NEU1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.348272e-02	ci left: 7.271416e-01	ci right 7.445209e-01	k: 7359	n:10000
KS ci ratio: 1.608669e-02	ci left: 8.488632e-01	ci right 8.627288e-01	k: 8559	n:10000
NEU1   10000 perm   1 sec   (7612 perm/sec)   p_kst 8.559000e-01   p_cons 7.359000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000114/NEU1.2_1272_10000_0.8559_0.7359_1.png
                gene_name: NEU1
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 55 percent done.
NEU2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.306013e+00	ci left: 3.454445e-04	ci right 1.575707e-03	k: 8	n:10000
Cons ci ratio: 3.959588e-02	ci left: 4.850534e-01	ci right 5.047496e-01	k: 4949	n:10000
KS ci ratio: 1.959510e+00	ci left: 6.187149e-05	ci right 8.764745e-04	k: 3	n:10000
NEU2   10000 perm   1 sec   (7667 perm/sec)   p_kst 3.000000e-04   p_cons 4.949000e-01   p_joint 8.000000e-04

Joint ci ratio: 1.239272e+00	ci left: 2.057886e-04	ci right 8.540675e-04	k: 9	n:20000
Cons ci ratio: 2.894945e-02	ci left: 4.713056e-01	ci right 4.852007e-01	k: 9565	n:20000
KS ci ratio: 1.306340e+00	ci left: 1.727069e-04	ci right 7.880065e-04	k: 8	n:20000
NEU2   20000 perm   3 sec   (6701 perm/sec)   p_kst 4.000000e-04   p_cons 4.782500e-01   p_joint 4.500000e-04

Joint ci ratio: 1.131361e+00	ci left: 1.830524e-04	ci right 6.559730e-04	k: 11	n:30000
Cons ci ratio: 2.352831e-02	ci left: 4.748985e-01	ci right 4.862386e-01	k: 14417	n:30000
KS ci ratio: 1.181688e+00	ci left: 1.598575e-04	ci right 6.129261e-04	k: 10	n:30000
NEU2   30000 perm   5 sec   (6342 perm/sec)   p_kst 3.333333e-04   p_cons 4.805667e-01   p_joint 3.666667e-04

Joint ci ratio: 1.131423e+00	ci left: 1.372867e-04	ci right 4.919976e-04	k: 11	n:40000
Cons ci ratio: 2.036788e-02	ci left: 4.758678e-01	ci right 4.856850e-01	k: 19231	n:40000
KS ci ratio: 9.797917e-01	ci left: 2.098994e-04	ci right 6.184302e-04	k: 15	n:40000
NEU2   40000 perm   7 sec   (6114 perm/sec)   p_kst 3.750000e-04   p_cons 4.807750e-01   p_joint 2.750000e-04

Joint ci ratio: 9.505685e-01	ci left: 1.829184e-04	ci right 5.196081e-04	k: 16	n:50000
Cons ci ratio: 1.826944e-02	ci left: 4.749724e-01	ci right 4.837500e-01	k: 23968	n:50000
KS ci ratio: 8.355546e-01	ci left: 2.600048e-04	ci right 6.419433e-04	k: 21	n:50000
NEU2   50000 perm   8 sec   (5936 perm/sec)   p_kst 4.200000e-04   p_cons 4.793600e-01   p_joint 3.200000e-04

Joint ci ratio: 8.763852e-01	ci left: 1.906644e-04	ci right 4.944703e-04	k: 19	n:60000
Cons ci ratio: 1.667917e-02	ci left: 4.753121e-01	ci right 4.833233e-01	k: 28759	n:60000
KS ci ratio: 7.686023e-01	ci left: 2.696623e-04	ci right 6.150212e-04	k: 25	n:60000
NEU2   60000 perm   10 sec   (5784 perm/sec)   p_kst 4.166667e-04   p_cons 4.793167e-01   p_joint 3.166667e-04

Joint ci ratio: 8.356095e-01	ci left: 1.857140e-04	ci right 4.585455e-04	k: 21	n:70000
Cons ci ratio: 1.540409e-02	ci left: 4.768354e-01	ci right 4.842519e-01	k: 33638	n:70000
KS ci ratio: 7.277697e-01	ci left: 2.658130e-04	ci right 5.780599e-04	k: 28	n:70000
NEU2   70000 perm   12 sec   (5651 perm/sec)   p_kst 4.000000e-04   p_cons 4.805429e-01   p_joint 3.000000e-04

Joint ci ratio: 8.552965e-01	ci left: 1.527130e-04	ci right 3.860784e-04	k: 20	n:80000
Cons ci ratio: 1.438561e-02	ci left: 4.778946e-01	ci right 4.848317e-01	k: 38509	n:80000
KS ci ratio: 6.822394e-01	ci left: 2.736153e-04	ci right 5.646342e-04	k: 32	n:80000
NEU2   80000 perm   14 sec   (5526 perm/sec)   p_kst 4.000000e-04   p_cons 4.813625e-01   p_joint 2.500000e-04

Joint ci ratio: 1.087128e+00	ci left: 6.889712e-05	ci right 2.328949e-04	k: 12	n:90000
Cons ci ratio: 1.357699e-02	ci left: 4.775753e-01	ci right 4.841148e-01	k: 43276	n:90000
KS ci ratio: 6.357702e-01	ci left: 2.894762e-04	ci right 5.666184e-04	k: 37	n:90000
NEU2   90000 perm   17 sec   (5408 perm/sec)   p_kst 4.111111e-04   p_cons 4.808444e-01   p_joint 1.333333e-04

Joint ci ratio: 1.087136e+00	ci left: 6.200724e-05	ci right 2.096065e-04	k: 12	n:100000
Cons ci ratio: 1.288608e-02	ci left: 4.775190e-01	ci right 4.837222e-01	k: 48062	n:100000
KS ci ratio: 6.196794e-01	ci left: 2.773424e-04	ci right 5.331047e-04	k: 39	n:100000
NEU2   100000 perm   19 sec   (5301 perm/sec)   p_kst 3.900000e-04   p_cons 4.806200e-01   p_joint 1.200000e-04

Joint ci ratio: 1.047593e+00	ci left: 6.292829e-05	ci right 2.020860e-04	k: 13	n:110000
Cons ci ratio: 1.228221e-02	ci left: 4.778343e-01	ci right 4.837485e-01	k: 52887	n:110000
KS ci ratio: 5.976748e-01	ci left: 2.751944e-04	ci right 5.160726e-04	k: 42	n:110000
NEU2   110000 perm   21 sec   (5199 perm/sec)   p_kst 3.818182e-04   p_cons 4.807909e-01   p_joint 1.181818e-04

Joint ci ratio: 1.047599e+00	ci left: 5.768416e-05	ci right 1.852462e-04	k: 13	n:120000
Cons ci ratio: 1.176678e-02	ci left: 4.776445e-01	ci right 4.833064e-01	k: 57657	n:120000
KS ci ratio: 5.908514e-01	ci left: 2.593394e-04	ci right 4.826426e-04	k: 43	n:120000
NEU2   120000 perm   24 sec   (5105 perm/sec)   p_kst 3.583333e-04   p_cons 4.804750e-01   p_joint 1.083333e-04

Joint ci ratio: 1.012077e+00	ci left: 5.887760e-05	ci right 1.806828e-04	k: 14	n:130000
Cons ci ratio: 1.129746e-02	ci left: 4.780960e-01	ci right 4.835356e-01	k: 62506	n:130000
KS ci ratio: 5.598923e-01	ci left: 2.722538e-04	ci right 4.895170e-04	k: 48	n:130000
NEU2   130000 perm   26 sec   (5014 perm/sec)   p_kst 3.692308e-04   p_cons 4.808154e-01   p_joint 1.076923e-04

Joint ci ratio: 1.012082e+00	ci left: 5.467197e-05	ci right 1.677773e-04	k: 14	n:140000
Cons ci ratio: 1.088981e-02	ci left: 4.780440e-01	ci right 4.832854e-01	k: 67293	n:140000
KS ci ratio: 5.435033e-01	ci left: 2.712463e-04	ci right 4.789410e-04	k: 51	n:140000
NEU2   140000 perm   28 sec   (4926 perm/sec)   p_kst 3.642857e-04   p_cons 4.806643e-01   p_joint 1.000000e-04

Joint ci ratio: 8.553514e-01	ci left: 8.144531e-05	ci right 2.059150e-04	k: 20	n:150000
Cons ci ratio: 1.052037e-02	ci left: 4.781420e-01	ci right 4.832054e-01	k: 72101	n:150000
KS ci ratio: 5.059669e-01	ci left: 2.994366e-04	ci right 5.073424e-04	k: 59	n:150000
NEU2   150000 perm   31 sec   (4840 perm/sec)   p_kst 3.933333e-04   p_cons 4.806733e-01   p_joint 1.333333e-04

Joint ci ratio: 8.356867e-01	ci left: 8.124760e-05	ci right 2.006226e-04	k: 21	n:160000
Cons ci ratio: 1.019649e-02	ci left: 4.777242e-01	ci right 4.826265e-01	k: 76828	n:160000
KS ci ratio: 4.937748e-01	ci left: 2.971065e-04	ci right 4.967304e-04	k: 62	n:160000
NEU2   160000 perm   34 sec   (4758 perm/sec)   p_kst 3.875000e-04   p_cons 4.801750e-01   p_joint 1.312500e-04

Joint ci ratio: 8.356903e-01	ci left: 7.646823e-05	ci right 1.888217e-04	k: 21	n:170000
Cons ci ratio: 9.907305e-03	ci left: 4.770285e-01	ci right 4.817839e-01	k: 81499	n:170000
KS ci ratio: 4.824236e-01	ci left: 2.951039e-04	ci right 4.873146e-04	k: 65	n:170000
NEU2   170000 perm   36 sec   (4680 perm/sec)   p_kst 3.823529e-04   p_cons 4.794059e-01   p_joint 1.235294e-04

Joint ci ratio: 8.001111e-01	ci left: 8.100182e-05	ci right 1.917233e-04	k: 23	n:180000
Cons ci ratio: 9.620790e-03	ci left: 4.774785e-01	ci right 4.820999e-01	k: 86362	n:180000
KS ci ratio: 4.684372e-01	ci left: 2.982681e-04	ci right 4.851082e-04	k: 69	n:180000
NEU2   180000 perm   39 sec   (4604 perm/sec)   p_kst 3.833333e-04   p_cons 4.797889e-01   p_joint 1.277778e-04

Joint ci ratio: 7.839464e-01	ci left: 8.093453e-05	ci right 1.879421e-04	k: 24	n:190000
Cons ci ratio: 9.368429e-03	ci left: 4.773145e-01	ci right 4.818124e-01	k: 91117	n:190000
KS ci ratio: 4.495637e-01	ci left: 3.104978e-04	ci right 4.947813e-04	k: 75	n:190000
NEU2   190000 perm   42 sec   (4525 perm/sec)   p_kst 3.947368e-04   p_cons 4.795632e-01   p_joint 1.263158e-04

Joint ci ratio: 7.687234e-01	ci left: 8.089499e-05	ci right 1.845192e-04	k: 25	n:200000
Cons ci ratio: 9.128076e-03	ci left: 4.775433e-01	ci right 4.819273e-01	k: 95947	n:200000
KS ci ratio: 4.381806e-01	ci left: 3.127373e-04	ci right 4.922639e-04	k: 79	n:200000
NEU2   200000 perm   45 sec   (4451 perm/sec)   p_kst 3.950000e-04   p_cons 4.797350e-01   p_joint 1.250000e-04

Joint ci ratio: 7.407592e-01	ci left: 8.473104e-05	ci right 1.870592e-04	k: 27	n:210000
Cons ci ratio: 8.909568e-03	ci left: 4.775136e-01	ci right 4.817918e-01	k: 100727	n:210000
KS ci ratio: 4.301898e-01	ci left: 3.105690e-04	ci right 4.846611e-04	k: 82	n:210000
NEU2   210000 perm   48 sec   (4383 perm/sec)   p_kst 3.904762e-04   p_cons 4.796524e-01   p_joint 1.285714e-04

Joint ci ratio: 7.040016e-01	ci left: 9.200580e-05	ci right 1.946619e-04	k: 30	n:220000
Cons ci ratio: 8.703895e-03	ci left: 4.776104e-01	ci right 4.817901e-01	k: 105534	n:220000
KS ci ratio: 4.226209e-01	ci left: 3.086248e-04	ci right 4.777228e-04	k: 85	n:220000
NEU2   220000 perm   51 sec   (4318 perm/sec)   p_kst 3.863636e-04   p_cons 4.797000e-01   p_joint 1.363636e-04

Joint ci ratio: 6.722233e-01	ci left: 9.876583e-05	ci right 2.014910e-04	k: 33	n:230000
Cons ci ratio: 8.518588e-03	ci left: 4.773043e-01	ci right 4.813919e-01	k: 110250	n:230000
KS ci ratio: 4.131225e-01	ci left: 3.107690e-04	ci right 4.761621e-04	k: 89	n:230000
NEU2   230000 perm   54 sec   (4256 perm/sec)   p_kst 3.869565e-04   p_cons 4.793478e-01   p_joint 1.434783e-04

Joint ci ratio: 6.625512e-01	ci left: 9.811022e-05	ci right 1.979594e-04	k: 34	n:240000
Cons ci ratio: 8.337038e-03	ci left: 4.774786e-01	ci right 4.814802e-01	k: 115075	n:240000
KS ci ratio: 4.086091e-01	ci left: 3.052920e-04	ci right 4.655125e-04	k: 91	n:240000
NEU2   240000 perm   57 sec   (4189 perm/sec)   p_kst 3.791667e-04   p_cons 4.794792e-01   p_joint 1.416667e-04

Joint ci ratio: 6.358584e-01	ci left: 1.042077e-04	ci right 2.039928e-04	k: 37	n:250000
Cons ci ratio: 8.169828e-03	ci left: 4.774439e-01	ci right 4.813645e-01	k: 119851	n:250000
KS ci ratio: 3.959014e-01	ci left: 3.146528e-04	ci right 4.733069e-04	k: 97	n:250000
NEU2   250000 perm   61 sec   (4129 perm/sec)   p_kst 3.880000e-04   p_cons 4.794040e-01   p_joint 1.480000e-04

Joint ci ratio: 6.121517e-01	ci left: 1.099122e-04	ci right 2.094890e-04	k: 40	n:260000
Cons ci ratio: 8.011241e-03	ci left: 4.774780e-01	ci right 4.813224e-01	k: 124644	n:260000
KS ci ratio: 3.843100e-01	ci left: 3.233648e-04	ci right 4.804315e-04	k: 103	n:260000
NEU2   260000 perm   64 sec   (4068 perm/sec)   p_kst 3.961538e-04   p_cons 4.794000e-01   p_joint 1.538462e-04

Joint ci ratio: 6.048210e-01	ci left: 1.089736e-04	ci right 2.059986e-04	k: 41	n:270000
Cons ci ratio: 7.864346e-03	ci left: 4.773326e-01	ci right 4.811049e-01	k: 129389	n:270000
KS ci ratio: 3.806686e-01	ci left: 3.180833e-04	ci right 4.707544e-04	k: 105	n:270000
NEU2   270000 perm   67 sec   (4011 perm/sec)   p_kst 3.888889e-04   p_cons 4.792185e-01   p_joint 1.518519e-04

Joint ci ratio: 6.048227e-01	ci left: 1.050817e-04	ci right 1.986417e-04	k: 41	n:280000
Cons ci ratio: 7.725575e-03	ci left: 4.771766e-01	ci right 4.808809e-01	k: 134128	n:280000
KS ci ratio: 3.719955e-01	ci left: 3.228915e-04	ci right 4.734800e-04	k: 110	n:280000
NEU2   280000 perm   71 sec   (3955 perm/sec)   p_kst 3.928571e-04   p_cons 4.790286e-01   p_joint 1.464286e-04

Joint ci ratio: 5.909164e-01	ci left: 1.073100e-04	ci right 1.997215e-04	k: 43	n:290000
Cons ci ratio: 7.589598e-03	ci left: 4.773148e-01	ci right 4.809546e-01	k: 138949	n:290000
KS ci ratio: 3.654688e-01	ci left: 3.242725e-04	ci right 4.722186e-04	k: 114	n:290000
NEU2   290000 perm   74 sec   (3902 perm/sec)   p_kst 3.931034e-04   p_cons 4.791345e-01   p_joint 1.482759e-04

Joint ci ratio: 5.779272e-01	ci left: 1.094131e-04	ci right 2.007067e-04	k: 45	n:300000
Cons ci ratio: 7.454481e-03	ci left: 4.778508e-01	ci right 4.814296e-01	k: 143892	n:300000
KS ci ratio: 3.577732e-01	ci left: 3.286161e-04	ci right 4.746523e-04	k: 119	n:300000
NEU2   300000 perm   78 sec   (3851 perm/sec)   p_kst 3.966667e-04   p_cons 4.796400e-01   p_joint 1.500000e-04

Joint ci ratio: 5.717465e-01	ci left: 1.086400e-04	ci right 1.979227e-04	k: 46	n:310000
Cons ci ratio: 7.330865e-03	ci left: 4.780431e-01	ci right 4.815637e-01	k: 148739	n:310000
KS ci ratio: 3.548297e-01	ci left: 3.238896e-04	ci right 4.663679e-04	k: 121	n:310000
NEU2   310000 perm   82 sec   (3800 perm/sec)   p_kst 3.903226e-04   p_cons 4.798032e-01   p_joint 1.483871e-04

Joint ci ratio: 5.543275e-01	ci left: 1.132848e-04	ci right 2.024344e-04	k: 49	n:320000
Cons ci ratio: 7.214014e-03	ci left: 4.781676e-01	ci right 4.816327e-01	k: 153568	n:320000
KS ci ratio: 3.464125e-01	ci left: 3.308672e-04	ci right 4.721882e-04	k: 127	n:320000
NEU2   320000 perm   85 sec   (3751 perm/sec)   p_kst 3.968750e-04   p_cons 4.799000e-01   p_joint 1.531250e-04

Joint ci ratio: 5.488665e-01	ci left: 1.124595e-04	ci right 1.997490e-04	k: 50	n:330000
Cons ci ratio: 7.104173e-03	ci left: 4.781729e-01	ci right 4.815850e-01	k: 158360	n:330000
KS ci ratio: 3.424235e-01	ci left: 3.291455e-04	ci right 4.677538e-04	k: 130	n:330000
NEU2   330000 perm   89 sec   (3704 perm/sec)   p_kst 3.939394e-04   p_cons 4.798788e-01   p_joint 1.515152e-04

Joint ci ratio: 5.384106e-01	ci left: 1.142258e-04	ci right 2.005572e-04	k: 52	n:340000
Cons ci ratio: 6.998747e-03	ci left: 4.782106e-01	ci right 4.815721e-01	k: 163163	n:340000
KS ci ratio: 3.373124e-01	ci left: 3.302255e-04	ci right 4.667613e-04	k: 134	n:340000
NEU2   340000 perm   93 sec   (3657 perm/sec)   p_kst 3.941176e-04   p_cons 4.798912e-01   p_joint 1.529412e-04

Joint ci ratio: 5.384119e-01	ci left: 1.109622e-04	ci right 1.948272e-04	k: 52	n:350000
Cons ci ratio: 6.899499e-03	ci left: 4.781293e-01	ci right 4.814424e-01	k: 167925	n:350000
KS ci ratio: 3.336263e-01	ci left: 3.286399e-04	ci right 4.627161e-04	k: 137	n:350000
NEU2   350000 perm   97 sec   (3612 perm/sec)   p_kst 3.914286e-04   p_cons 4.797857e-01   p_joint 1.485714e-04

Joint ci ratio: 5.384130e-01	ci left: 1.078798e-04	ci right 1.894154e-04	k: 52	n:360000
Cons ci ratio: 6.800344e-03	ci left: 4.783473e-01	ci right 4.816141e-01	k: 172793	n:360000
KS ci ratio: 3.312356e-01	ci left: 3.246028e-04	ci right 4.558806e-04	k: 139	n:360000
NEU2   360000 perm   101 sec   (3568 perm/sec)   p_kst 3.861111e-04   p_cons 4.799806e-01   p_joint 1.444444e-04

Joint ci ratio: 5.384141e-01	ci left: 1.049641e-04	ci right 1.842962e-04	k: 52	n:370000
Cons ci ratio: 6.707485e-03	ci left: 4.783944e-01	ci right 4.816167e-01	k: 177602	n:370000
KS ci ratio: 3.288955e-01	ci left: 3.207872e-04	ci right 4.494115e-04	k: 141	n:370000
NEU2   370000 perm   105 sec   (3525 perm/sec)   p_kst 3.810811e-04   p_cons 4.800054e-01   p_joint 1.405405e-04

Joint ci ratio: 5.334058e-01	ci left: 1.044771e-04	ci right 1.824311e-04	k: 53	n:380000
Cons ci ratio: 6.614562e-03	ci left: 4.787235e-01	ci right 4.819031e-01	k: 182519	n:380000
KS ci ratio: 3.243588e-01	ci left: 3.220088e-04	ci right 4.489712e-04	k: 145	n:380000
NEU2   380000 perm   109 sec   (3483 perm/sec)   p_kst 3.815789e-04   p_cons 4.803132e-01   p_joint 1.394737e-04

Joint ci ratio: 5.191781e-01	ci left: 1.084679e-04	ci right 1.864592e-04	k: 56	n:390000
Cons ci ratio: 6.528476e-03	ci left: 4.788001e-01	ci right 4.819387e-01	k: 187344	n:390000
KS ci ratio: 3.178916e-01	ci left: 3.278971e-04	ci right 4.540793e-04	k: 151	n:390000
NEU2   390000 perm   113 sec   (3442 perm/sec)   p_kst 3.871795e-04   p_cons 4.803692e-01   p_joint 1.435897e-04

Joint ci ratio: 5.103023e-01	ci left: 1.101064e-04	ci right 1.874421e-04	k: 58	n:400000
Cons ci ratio: 6.443408e-03	ci left: 4.790481e-01	ci right 4.821472e-01	k: 192239	n:400000
KS ci ratio: 3.117965e-01	ci left: 3.335148e-04	ci right 4.589083e-04	k: 157	n:400000
NEU2   400000 perm   118 sec   (3403 perm/sec)   p_kst 3.925000e-04   p_cons 4.805975e-01   p_joint 1.450000e-04

Joint ci ratio: 5.103032e-01	ci left: 1.074208e-04	ci right 1.828705e-04	k: 58	n:410000
Cons ci ratio: 6.364034e-03	ci left: 4.790915e-01	ci right 4.821526e-01	k: 197055	n:410000
KS ci ratio: 3.108156e-01	ci left: 3.276286e-04	ci right 4.503447e-04	k: 158	n:410000
NEU2   410000 perm   122 sec   (3366 perm/sec)   p_kst 3.853659e-04   p_cons 4.806220e-01   p_joint 1.414634e-04

Joint ci ratio: 5.060331e-01	ci left: 1.069387e-04	ci right 1.812004e-04	k: 59	n:420000
Cons ci ratio: 6.287252e-03	ci left: 4.791546e-01	ci right 4.821790e-01	k: 201880	n:420000
KS ci ratio: 3.098438e-01	ci left: 3.220233e-04	ci right 4.421882e-04	k: 159	n:420000
NEU2   420000 perm   126 sec   (3328 perm/sec)   p_kst 3.785714e-04   p_cons 4.806667e-01   p_joint 1.404762e-04

Joint ci ratio: 4.978040e-01	ci left: 1.085137e-04	ci right 1.822220e-04	k: 61	n:430000
Cons ci ratio: 6.213040e-03	ci left: 4.792266e-01	ci right 4.822156e-01	k: 206710	n:430000
KS ci ratio: 3.060418e-01	ci left: 3.231181e-04	ci right 4.419236e-04	k: 163	n:430000
NEU2   430000 perm   131 sec   (3291 perm/sec)   p_kst 3.790698e-04   p_cons 4.807209e-01   p_joint 1.418605e-04

Joint ci ratio: 4.938377e-01	ci left: 1.080358e-04	ci right 1.806355e-04	k: 62	n:440000
Cons ci ratio: 6.140444e-03	ci left: 4.793727e-01	ci right 4.823276e-01	k: 211574	n:440000
KS ci ratio: 3.023765e-01	ci left: 3.241716e-04	ci right 4.416625e-04	k: 167	n:440000
NEU2   440000 perm   135 sec   (3255 perm/sec)   p_kst 3.795455e-04   p_cons 4.808500e-01   p_joint 1.409091e-04

Joint ci ratio: 4.824827e-01	ci left: 1.114809e-04	ci right 1.841027e-04	k: 65	n:450000
Cons ci ratio: 6.069686e-03	ci left: 4.795659e-01	ci right 4.824877e-01	k: 216462	n:450000
KS ci ratio: 2.979745e-01	ci left: 3.272423e-04	ci right 4.437930e-04	k: 172	n:450000
NEU2   450000 perm   140 sec   (3219 perm/sec)   p_kst 3.822222e-04   p_cons 4.810267e-01   p_joint 1.444444e-04

Joint ci ratio: 4.753342e-01	ci left: 1.128802e-04	ci right 1.849695e-04	k: 67	n:460000
Cons ci ratio: 6.004376e-03	ci left: 4.794965e-01	ci right 4.823864e-01	k: 221233	n:460000
KS ci ratio: 2.937593e-01	ci left: 3.301914e-04	ci right 4.458192e-04	k: 177	n:460000
NEU2   460000 perm   144 sec   (3184 perm/sec)   p_kst 3.847826e-04   p_cons 4.809413e-01   p_joint 1.456522e-04

Joint ci ratio: 4.684942e-01	ci left: 1.142275e-04	ci right 1.857919e-04	k: 69	n:470000
Cons ci ratio: 5.940243e-03	ci left: 4.795047e-01	ci right 4.823636e-01	k: 226039	n:470000
KS ci ratio: 2.889294e-01	ci left: 3.349993e-04	ci right 4.500297e-04	k: 183	n:470000
NEU2   470000 perm   149 sec   (3151 perm/sec)   p_kst 3.893617e-04   p_cons 4.809340e-01   p_joint 1.468085e-04

Joint ci ratio: 4.619413e-01	ci left: 1.155259e-04	ci right 1.865731e-04	k: 71	n:480000
Cons ci ratio: 5.878809e-03	ci left: 4.794544e-01	ci right 4.822833e-01	k: 230817	n:480000
KS ci ratio: 2.866026e-01	ci left: 3.338191e-04	ci right 4.473540e-04	k: 186	n:480000
NEU2   480000 perm   154 sec   (3118 perm/sec)   p_kst 3.875000e-04   p_cons 4.808688e-01   p_joint 1.479167e-04

Joint ci ratio: 4.587667e-01	ci left: 1.149723e-04	ci right 1.850415e-04	k: 72	n:490000
Cons ci ratio: 5.819765e-03	ci left: 4.793614e-01	ci right 4.821613e-01	k: 235573	n:490000
KS ci ratio: 2.843313e-01	ci left: 3.326906e-04	ci right 4.447839e-04	k: 189	n:490000
NEU2   490000 perm   159 sec   (3085 perm/sec)   p_kst 3.857143e-04   p_cons 4.807612e-01   p_joint 1.469388e-04

Joint ci ratio: 4.526082e-01	ci left: 1.162136e-04	ci right 1.857969e-04	k: 74	n:500000
Cons ci ratio: 5.759511e-03	ci left: 4.795282e-01	ci right 4.823000e-01	k: 240457	n:500000
KS ci ratio: 2.799448e-01	ci left: 3.371880e-04	ci right 4.487349e-04	k: 195	n:500000
NEU2   500000 perm   164 sec   (3053 perm/sec)   p_kst 3.900000e-04   p_cons 4.809140e-01   p_joint 1.480000e-04

Joint ci ratio: 4.466913e-01	ci left: 1.174122e-04	ci right 1.865168e-04	k: 76	n:510000
Cons ci ratio: 5.700530e-03	ci left: 4.797377e-01	ci right 4.824822e-01	k: 245366	n:510000
KS ci ratio: 2.750750e-01	ci left: 3.433471e-04	ci right 4.546140e-04	k: 202	n:510000
NEU2   510000 perm   169 sec   (3021 perm/sec)   p_kst 3.960784e-04   p_cons 4.811098e-01   p_joint 1.490196e-04

Joint ci ratio: 4.355212e-01	ci left: 1.219923e-04	ci right 1.914713e-04	k: 80	n:520000
Cons ci ratio: 5.644367e-03	ci left: 4.798469e-01	ci right 4.825649e-01	k: 250227	n:520000
KS ci ratio: 2.717485e-01	ci left: 3.457006e-04	ci right 4.561443e-04	k: 207	n:520000
NEU2   520000 perm   174 sec   (2990 perm/sec)   p_kst 3.980769e-04   p_cons 4.812058e-01   p_joint 1.538462e-04

Joint ci ratio: 4.355219e-01	ci left: 1.196905e-04	ci right 1.878587e-04	k: 80	n:530000
Cons ci ratio: 5.590444e-03	ci left: 4.798974e-01	ci right 4.825896e-01	k: 255059	n:530000
KS ci ratio: 2.698100e-01	ci left: 3.444541e-04	ci right 4.535816e-04	k: 210	n:530000
NEU2   530000 perm   179 sec   (2959 perm/sec)   p_kst 3.962264e-04   p_cons 4.812434e-01   p_joint 1.509434e-04

Joint ci ratio: 4.355225e-01	ci left: 1.174740e-04	ci right 1.843799e-04	k: 80	n:540000
Cons ci ratio: 5.537934e-03	ci left: 4.799554e-01	ci right 4.826226e-01	k: 259896	n:540000
KS ci ratio: 2.685407e-01	ci left: 3.415290e-04	ci right 4.491351e-04	k: 212	n:540000
NEU2   540000 perm   184 sec   (2930 perm/sec)   p_kst 3.925926e-04   p_cons 4.812889e-01   p_joint 1.481481e-04

Joint ci ratio: 4.276740e-01	ci left: 1.202000e-04	ci right 1.870711e-04	k: 83	n:550000
Cons ci ratio: 5.488036e-03	ci left: 4.799060e-01	ci right 4.825488e-01	k: 264675	n:550000
KS ci ratio: 2.666696e-01	ci left: 3.404080e-04	ci right 4.467886e-04	k: 215	n:550000
NEU2   550000 perm   190 sec   (2900 perm/sec)   p_kst 3.909091e-04   p_cons 4.812273e-01   p_joint 1.509091e-04

Joint ci ratio: 4.276746e-01	ci left: 1.180535e-04	ci right 1.837306e-04	k: 83	n:560000
Cons ci ratio: 5.436992e-03	ci left: 4.800852e-01	ci right 4.827043e-01	k: 269581	n:560000
KS ci ratio: 2.654440e-01	ci left: 3.376625e-04	ci right 4.426195e-04	k: 217	n:560000
NEU2   560000 perm   195 sec   (2871 perm/sec)   p_kst 3.875000e-04   p_cons 4.813946e-01   p_joint 1.482143e-04

Joint ci ratio: 4.226722e-01	ci left: 1.191157e-04	ci right 1.843894e-04	k: 85	n:570000
Cons ci ratio: 5.387611e-03	ci left: 4.802337e-01	ci right 4.828297e-01	k: 274473	n:570000
KS ci ratio: 2.636364e-01	ci left: 3.366527e-04	ci right 4.404656e-04	k: 220	n:570000
NEU2   570000 perm   201 sec   (2843 perm/sec)   p_kst 3.859649e-04   p_cons 4.815316e-01   p_joint 1.491228e-04

Joint ci ratio: 4.154869e-01	ci left: 1.216889e-04	ci right 1.869251e-04	k: 88	n:580000
Cons ci ratio: 5.341708e-03	ci left: 4.801754e-01	ci right 4.827489e-01	k: 279248	n:580000
KS ci ratio: 2.618652e-01	ci left: 3.356801e-04	ci right 4.383837e-04	k: 223	n:580000
NEU2   580000 perm   206 sec   (2815 perm/sec)   p_kst 3.844828e-04   p_cons 4.814621e-01   p_joint 1.517241e-04

Joint ci ratio: 4.000504e-01	ci left: 1.302742e-04	ci right 1.968313e-04	k: 95	n:590000
Cons ci ratio: 5.296311e-03	ci left: 4.801802e-01	ci right 4.827318e-01	k: 284059	n:590000
KS ci ratio: 2.578664e-01	ci left: 3.410824e-04	ci right 4.435888e-04	k: 230	n:590000
NEU2   590000 perm   212 sec   (2788 perm/sec)   p_kst 3.898305e-04   p_cons 4.814559e-01   p_joint 1.610169e-04

Joint ci ratio: 4.000510e-01	ci left: 1.281030e-04	ci right 1.935509e-04	k: 95	n:600000
Cons ci ratio: 5.252017e-03	ci left: 4.801883e-01	ci right 4.827185e-01	k: 288872	n:600000
KS ci ratio: 2.556623e-01	ci left: 3.416353e-04	ci right 4.432904e-04	k: 234	n:600000
NEU2   600000 perm   217 sec   (2761 perm/sec)   p_kst 3.900000e-04   p_cons 4.814533e-01   p_joint 1.583333e-04

Joint ci ratio: 3.959477e-01	ci left: 1.289534e-04	ci right 1.939831e-04	k: 97	n:610000
Cons ci ratio: 5.208833e-03	ci left: 4.801946e-01	ci right 4.827040e-01	k: 293684	n:610000
KS ci ratio: 2.540461e-01	ci left: 3.406386e-04	ci right 4.412549e-04	k: 237	n:610000
NEU2   610000 perm   223 sec   (2735 perm/sec)   p_kst 3.885246e-04   p_cons 4.814492e-01   p_joint 1.590164e-04

Joint ci ratio: 3.881056e-01	ci left: 1.326893e-04	ci right 1.979387e-04	k: 101	n:620000
Cons ci ratio: 5.167332e-03	ci left: 4.801394e-01	ci right 4.826285e-01	k: 298458	n:620000
KS ci ratio: 2.493737e-01	ci left: 3.487452e-04	ci right 4.495675e-04	k: 246	n:620000
NEU2   620000 perm   229 sec   (2709 perm/sec)   p_kst 3.967742e-04   p_cons 4.813839e-01   p_joint 1.629032e-04

Joint ci ratio: 3.862172e-01	ci left: 1.320159e-04	ci right 1.965379e-04	k: 102	n:630000
Cons ci ratio: 5.126220e-03	ci left: 4.801433e-01	ci right 4.826125e-01	k: 303268	n:630000
KS ci ratio: 2.463986e-01	ci left: 3.521419e-04	ci right 4.525456e-04	k: 252	n:630000
NEU2   630000 perm   235 sec   (2683 perm/sec)   p_kst 4.000000e-04   p_cons 4.813778e-01   p_joint 1.619048e-04

Joint ci ratio: 3.789287e-01	ci left: 1.356021e-04	ci right 2.003152e-04	k: 106	n:640000
Cons ci ratio: 5.085056e-03	ci left: 4.802470e-01	ci right 4.826969e-01	k: 308142	n:640000
KS ci ratio: 2.435275e-01	ci left: 3.554393e-04	ci right 4.554238e-04	k: 258	n:640000
NEU2   640000 perm   241 sec   (2659 perm/sec)   p_kst 4.031250e-04   p_cons 4.814719e-01   p_joint 1.656250e-04

Joint ci ratio: 3.771705e-01	ci left: 1.349082e-04	ci right 1.989174e-04	k: 107	n:650000
Cons ci ratio: 5.044323e-03	ci left: 4.804015e-01	ci right 4.828325e-01	k: 313051	n:650000
KS ci ratio: 2.421294e-01	ci left: 3.543055e-04	ci right 4.533130e-04	k: 261	n:650000
NEU2   650000 perm   247 sec   (2636 perm/sec)   p_kst 4.015385e-04   p_cons 4.816169e-01   p_joint 1.646154e-04

Joint ci ratio: 3.720384e-01	ci left: 1.369817e-04	ci right 2.008750e-04	k: 110	n:660000
Cons ci ratio: 5.005342e-03	ci left: 4.804726e-01	ci right 4.828851e-01	k: 317908	n:660000
KS ci ratio: 2.398514e-01	ci left: 3.560557e-04	ci right 4.544769e-04	k: 266	n:660000
NEU2   660000 perm   253 sec   (2612 perm/sec)   p_kst 4.030303e-04   p_cons 4.816788e-01   p_joint 1.666667e-04

Joint ci ratio: 3.703739e-01	ci left: 1.362904e-04	ci right 1.995080e-04	k: 111	n:670000
Cons ci ratio: 4.967549e-03	ci left: 4.805119e-01	ci right 4.829062e-01	k: 322745	n:670000
KS ci ratio: 2.389585e-01	ci left: 3.535474e-04	ci right 4.508575e-04	k: 268	n:670000
NEU2   670000 perm   259 sec   (2589 perm/sec)   p_kst 4.000000e-04   p_cons 4.817090e-01   p_joint 1.656716e-04

Joint ci ratio: 3.639316e-01	ci left: 1.396259e-04	ci right 2.029967e-04	k: 115	n:680000
Cons ci ratio: 4.931237e-03	ci left: 4.804853e-01	ci right 4.828619e-01	k: 327538	n:680000
KS ci ratio: 2.367680e-01	ci left: 3.552629e-04	ci right 4.520175e-04	k: 273	n:680000
NEU2   680000 perm   265 sec   (2566 perm/sec)   p_kst 4.014706e-04   p_cons 4.816735e-01   p_joint 1.691176e-04

Joint ci ratio: 3.639320e-01	ci left: 1.376023e-04	ci right 2.000548e-04	k: 115	n:690000
Cons ci ratio: 4.896777e-03	ci left: 4.803508e-01	ci right 4.827102e-01	k: 332256	n:690000
KS ci ratio: 2.354825e-01	ci left: 3.542048e-04	ci right 4.500712e-04	k: 276	n:690000
NEU2   690000 perm   271 sec   (2544 perm/sec)   p_kst 4.000000e-04   p_cons 4.815304e-01   p_joint 1.666667e-04

Joint ci ratio: 3.593150e-01	ci left: 1.395330e-04	ci right 2.018702e-04	k: 118	n:700000
Cons ci ratio: 4.861442e-03	ci left: 4.803831e-01	ci right 4.827256e-01	k: 337088	n:700000
KS ci ratio: 2.329725e-01	ci left: 3.572133e-04	ci right 4.527150e-04	k: 282	n:700000
NEU2   700000 perm   278 sec   (2521 perm/sec)   p_kst 4.028571e-04   p_cons 4.815543e-01   p_joint 1.685714e-04

Joint ci ratio: 3.563330e-01	ci left: 1.401314e-04	ci right 2.020961e-04	k: 120	n:710000
Cons ci ratio: 4.825922e-03	ci left: 4.805118e-01	ci right 4.828377e-01	k: 341989	n:710000
KS ci ratio: 2.313433e-01	ci left: 3.574882e-04	ci right 4.522996e-04	k: 286	n:710000
NEU2   710000 perm   284 sec   (2499 perm/sec)   p_kst 4.028169e-04   p_cons 4.816746e-01   p_joint 1.690141e-04

Joint ci ratio: 3.534241e-01	ci left: 1.407153e-04	ci right 2.023136e-04	k: 122	n:720000
Cons ci ratio: 4.792221e-03	ci left: 4.805272e-01	ci right 4.828369e-01	k: 346811	n:720000
KS ci ratio: 2.289621e-01	ci left: 3.603761e-04	ci right 4.548305e-04	k: 292	n:720000
NEU2   720000 perm   291 sec   (2478 perm/sec)   p_kst 4.055556e-04   p_cons 4.816819e-01   p_joint 1.694444e-04

Joint ci ratio: 3.519963e-01	ci left: 1.400362e-04	ci right 2.010329e-04	k: 123	n:730000
Cons ci ratio: 4.758160e-03	ci left: 4.806532e-01	ci right 4.829470e-01	k: 351714	n:730000
KS ci ratio: 2.277990e-01	ci left: 3.593139e-04	ci right 4.529443e-04	k: 295	n:730000
NEU2   730000 perm   297 sec   (2457 perm/sec)   p_kst 4.041096e-04   p_cons 4.818000e-01   p_joint 1.684932e-04

Joint ci ratio: 3.478137e-01	ci left: 1.418416e-04	ci right 2.027252e-04	k: 126	n:740000
Cons ci ratio: 4.727039e-03	ci left: 4.805407e-01	ci right 4.828189e-01	k: 356443	n:740000
KS ci ratio: 2.251519e-01	ci left: 3.633812e-04	ci right 4.568185e-04	k: 302	n:740000
NEU2   740000 perm   304 sec   (2436 perm/sec)   p_kst 4.081081e-04   p_cons 4.816797e-01   p_joint 1.702703e-04

Joint ci ratio: 3.437767e-01	ci left: 1.436030e-04	ci right 2.043682e-04	k: 129	n:750000
Cons ci ratio: 4.695392e-03	ci left: 4.805512e-01	ci right 4.828142e-01	k: 361262	n:750000
KS ci ratio: 2.218800e-01	ci left: 3.698645e-04	ci right 4.633981e-04	k: 311	n:750000
NEU2   750000 perm   311 sec   (2415 perm/sec)   p_kst 4.146667e-04   p_cons 4.816827e-01   p_joint 1.720000e-04

Joint ci ratio: 3.437771e-01	ci left: 1.417135e-04	ci right 2.016791e-04	k: 129	n:760000
Cons ci ratio: 4.664827e-03	ci left: 4.805129e-01	ci right 4.827609e-01	k: 366044	n:760000
KS ci ratio: 2.201231e-01	ci left: 3.712127e-04	ci right 4.642433e-04	k: 316	n:760000
NEU2   760000 perm   317 sec   (2396 perm/sec)   p_kst 4.157895e-04   p_cons 4.816368e-01   p_joint 1.697368e-04

Joint ci ratio: 3.411627e-01	ci left: 1.422471e-04	ci right 2.018799e-04	k: 131	n:770000
Cons ci ratio: 4.634936e-03	ci left: 4.804665e-01	ci right 4.826999e-01	k: 370819	n:770000
KS ci ratio: 2.184072e-01	ci left: 3.725287e-04	ci right 4.650637e-04	k: 321	n:770000
NEU2   770000 perm   324 sec   (2376 perm/sec)   p_kst 4.168831e-04   p_cons 4.815831e-01   p_joint 1.701299e-04

Joint ci ratio: 3.411631e-01	ci left: 1.404234e-04	ci right 1.992917e-04	k: 131	n:780000
Cons ci ratio: 4.605222e-03	ci left: 4.804636e-01	ci right 4.826826e-01	k: 375627	n:780000
KS ci ratio: 2.170632e-01	ci left: 3.726012e-04	ci right 4.645088e-04	k: 325	n:780000
NEU2   780000 perm   331 sec   (2358 perm/sec)   p_kst 4.166667e-04   p_cons 4.815731e-01   p_joint 1.679487e-04

Joint ci ratio: 3.386075e-01	ci left: 1.409615e-04	ci right 1.995159e-04	k: 133	n:790000
Cons ci ratio: 4.575272e-03	ci left: 4.805482e-01	ci right 4.827532e-01	k: 380504	n:790000
KS ci ratio: 2.154174e-01	ci left: 3.738711e-04	ci right 4.653002e-04	k: 330	n:790000
NEU2   790000 perm   338 sec   (2339 perm/sec)   p_kst 4.177215e-04   p_cons 4.816506e-01   p_joint 1.683544e-04

Joint ci ratio: 3.361084e-01	ci left: 1.414877e-04	ci right 1.997330e-04	k: 135	n:800000
Cons ci ratio: 4.547560e-03	ci left: 4.804483e-01	ci right 4.826393e-01	k: 385235	n:800000
KS ci ratio: 2.141275e-01	ci left: 3.739288e-04	ci right 4.647525e-04	k: 334	n:800000
NEU2   800000 perm   345 sec   (2321 perm/sec)   p_kst 4.175000e-04   p_cons 4.815437e-01   p_joint 1.687500e-04

Joint ci ratio: 3.336639e-01	ci left: 1.420025e-04	ci right 1.999431e-04	k: 137	n:810000
Cons ci ratio: 4.519529e-03	ci left: 4.804410e-01	ci right 4.826184e-01	k: 390039	n:810000
KS ci ratio: 2.131753e-01	ci left: 3.728179e-04	ci right 4.629164e-04	k: 337	n:810000
NEU2   810000 perm   352 sec   (2303 perm/sec)   p_kst 4.160494e-04   p_cons 4.815296e-01   p_joint 1.691358e-04

Joint ci ratio: 3.324617e-01	ci left: 1.413883e-04	ci right 1.988259e-04	k: 138	n:820000
Cons ci ratio: 4.492010e-03	ci left: 4.804338e-01	ci right 4.825980e-01	k: 394843	n:820000
KS ci ratio: 2.125476e-01	ci left: 3.705803e-04	ci right 4.598400e-04	k: 339	n:820000
NEU2   820000 perm   359 sec   (2285 perm/sec)   p_kst 4.134146e-04   p_cons 4.815159e-01   p_joint 1.682927e-04

Joint ci ratio: 3.277784e-01	ci left: 1.441048e-04	ci right 2.016476e-04	k: 142	n:830000
Cons ci ratio: 4.465516e-03	ci left: 4.803679e-01	ci right 4.825190e-01	k: 399598	n:830000
KS ci ratio: 2.106964e-01	ci left: 3.729613e-04	ci right 4.619112e-04	k: 345	n:830000
NEU2   830000 perm   366 sec   (2267 perm/sec)   p_kst 4.156627e-04   p_cons 4.814434e-01   p_joint 1.710843e-04

Joint ci ratio: 3.277788e-01	ci left: 1.423892e-04	ci right 1.992471e-04	k: 142	n:840000
Cons ci ratio: 4.439221e-03	ci left: 4.803333e-01	ci right 4.824715e-01	k: 404378	n:840000
KS ci ratio: 2.100904e-01	ci left: 3.707768e-04	ci right 4.589185e-04	k: 347	n:840000
NEU2   840000 perm   373 sec   (2250 perm/sec)   p_kst 4.130952e-04   p_cons 4.814024e-01   p_joint 1.690476e-04

Joint ci ratio: 3.221938e-01	ci left: 1.461166e-04	ci right 2.032635e-04	k: 147	n:850000
Cons ci ratio: 4.413228e-03	ci left: 4.803173e-01	ci right 4.824429e-01	k: 409173	n:850000
KS ci ratio: 2.083021e-01	ci left: 3.731038e-04	ci right 4.609475e-04	k: 353	n:850000
NEU2   850000 perm   381 sec   (2233 perm/sec)   p_kst 4.152941e-04   p_cons 4.813800e-01   p_joint 1.729412e-04

Joint ci ratio: 3.221941e-01	ci left: 1.444176e-04	ci right 2.009000e-04	k: 147	n:860000
Cons ci ratio: 4.386410e-03	ci left: 4.804470e-01	ci right 4.825601e-01	k: 414093	n:860000
KS ci ratio: 2.080089e-01	ci left: 3.698675e-04	ci right 4.568111e-04	k: 354	n:860000
NEU2   860000 perm   388 sec   (2215 perm/sec)   p_kst 4.116279e-04   p_cons 4.815035e-01   p_joint 1.709302e-04

Joint ci ratio: 3.200389e-01	ci left: 1.448712e-04	ci right 2.010743e-04	k: 149	n:870000
Cons ci ratio: 4.360968e-03	ci left: 4.804714e-01	ci right 4.825724e-01	k: 418924	n:870000
KS ci ratio: 2.074257e-01	ci left: 3.677954e-04	ci right 4.539787e-04	k: 356	n:870000
NEU2   870000 perm   396 sec   (2198 perm/sec)   p_kst 4.091954e-04   p_cons 4.815218e-01   p_joint 1.712644e-04

Joint ci ratio: 3.189775e-01	ci left: 1.442702e-04	ci right 2.000166e-04	k: 150	n:880000
Cons ci ratio: 4.336121e-03	ci left: 4.804771e-01	ci right 4.825662e-01	k: 423739	n:880000
KS ci ratio: 2.059881e-01	ci left: 3.690036e-04	ci right 4.547953e-04	k: 361	n:880000
NEU2   880000 perm   403 sec   (2182 perm/sec)   p_kst 4.102273e-04   p_cons 4.815216e-01   p_joint 1.704545e-04

Joint ci ratio: 3.168858e-01	ci left: 1.447171e-04	ci right 2.001951e-04	k: 152	n:890000
Cons ci ratio: 4.311694e-03	ci left: 4.804828e-01	ci right 4.825600e-01	k: 428554	n:890000
KS ci ratio: 2.048594e-01	ci left: 3.691207e-04	ci right 4.544105e-04	k: 365	n:890000
NEU2   890000 perm   411 sec   (2166 perm/sec)   p_kst 4.101124e-04   p_cons 4.815213e-01   p_joint 1.707865e-04

Joint ci ratio: 3.148347e-01	ci left: 1.451552e-04	ci right 2.003685e-04	k: 154	n:900000
Cons ci ratio: 4.287313e-03	ci left: 4.805305e-01	ci right 4.825962e-01	k: 433407	n:900000
KS ci ratio: 2.037491e-01	ci left: 3.692365e-04	ci right 4.540330e-04	k: 369	n:900000
NEU2   900000 perm   419 sec   (2150 perm/sec)   p_kst 4.100000e-04   p_cons 4.815633e-01   p_joint 1.711111e-04

Joint ci ratio: 3.128229e-01	ci left: 1.455848e-04	ci right 2.005370e-04	k: 156	n:910000
Cons ci ratio: 4.263650e-03	ci left: 4.805410e-01	ci right 4.825953e-01	k: 438227	n:910000
KS ci ratio: 2.023861e-01	ci left: 3.703941e-04	ci right 4.548171e-04	k: 374	n:910000
NEU2   910000 perm   426 sec   (2134 perm/sec)   p_kst 4.109890e-04   p_cons 4.815681e-01   p_joint 1.714286e-04

Joint ci ratio: 3.098761e-01	ci left: 1.470085e-04	ci right 2.018720e-04	k: 159	n:920000
Cons ci ratio: 4.240505e-03	ci left: 4.805361e-01	ci right 4.825792e-01	k: 443033	n:920000
KS ci ratio: 2.007860e-01	ci left: 3.725607e-04	ci right 4.567239e-04	k: 380	n:920000
NEU2   920000 perm   434 sec   (2118 perm/sec)   p_kst 4.130435e-04   p_cons 4.815576e-01   p_joint 1.728261e-04

Joint ci ratio: 3.079573e-01	ci left: 1.474116e-04	ci right 2.020181e-04	k: 161	n:930000
Cons ci ratio: 4.217159e-03	ci left: 4.805991e-01	ci right 4.826312e-01	k: 447902	n:930000
KS ci ratio: 1.992232e-01	ci left: 3.746832e-04	ci right 4.585871e-04	k: 386	n:930000
NEU2   930000 perm   442 sec   (2103 perm/sec)   p_kst 4.150538e-04   p_cons 4.816151e-01   p_joint 1.731183e-04

Joint ci ratio: 3.051446e-01	ci left: 1.487895e-04	ci right 2.033051e-04	k: 164	n:940000
Cons ci ratio: 4.195018e-03	ci left: 4.805628e-01	ci right 4.825841e-01	k: 452679	n:940000
KS ci ratio: 1.976964e-01	ci left: 3.767631e-04	ci right 4.604082e-04	k: 392	n:940000
NEU2   940000 perm   450 sec   (2089 perm/sec)   p_kst 4.170213e-04   p_cons 4.815734e-01   p_joint 1.744681e-04

Joint ci ratio: 3.042243e-01	ci left: 1.481954e-04	ci right 2.022979e-04	k: 165	n:950000
Cons ci ratio: 4.171752e-03	ci left: 4.807032e-01	ci right 4.827138e-01	k: 457623	n:950000
KS ci ratio: 1.971955e-01	ci left: 3.747983e-04	ci right 4.577710e-04	k: 394	n:950000
NEU2   950000 perm   458 sec   (2074 perm/sec)   p_kst 4.147368e-04   p_cons 4.817084e-01   p_joint 1.736842e-04

Joint ci ratio: 3.033122e-01	ci left: 1.476140e-04	ci right 2.013115e-04	k: 166	n:960000
Cons ci ratio: 4.149691e-03	ci left: 4.807417e-01	ci right 4.827418e-01	k: 462472	n:960000
KS ci ratio: 1.964510e-01	ci left: 3.738651e-04	ci right 4.562814e-04	k: 397	n:960000
NEU2   960000 perm   466 sec   (2060 perm/sec)   p_kst 4.135417e-04   p_cons 4.817417e-01   p_joint 1.729167e-04

Joint ci ratio: 3.024082e-01	ci left: 1.470448e-04	ci right 2.003451e-04	k: 167	n:970000
Cons ci ratio: 4.128326e-03	ci left: 4.807371e-01	ci right 4.827269e-01	k: 467280	n:970000
KS ci ratio: 1.947456e-01	ci left: 3.768740e-04	ci right 4.591469e-04	k: 404	n:970000
NEU2   970000 perm   474 sec   (2045 perm/sec)   p_kst 4.164948e-04   p_cons 4.817320e-01   p_joint 1.721649e-04

Joint ci ratio: 3.006240e-01	ci left: 1.474308e-04	ci right 2.004955e-04	k: 169	n:980000
Cons ci ratio: 4.107170e-03	ci left: 4.807470e-01	ci right 4.827266e-01	k: 472102	n:980000
KS ci ratio: 1.937910e-01	ci left: 3.769115e-04	ci right 4.587416e-04	k: 408	n:980000
NEU2   980000 perm   482 sec   (2031 perm/sec)   p_kst 4.163265e-04   p_cons 4.817367e-01   p_joint 1.724490e-04

Joint ci ratio: 2.980059e-01	ci left: 1.487444e-04	ci right 2.017275e-04	k: 172	n:990000
Cons ci ratio: 4.086195e-03	ci left: 4.807739e-01	ci right 4.827434e-01	k: 476941	n:990000
KS ci ratio: 1.923848e-01	ci left: 3.788720e-04	ci right 4.604610e-04	k: 414	n:990000
NEU2   990000 perm   491 sec   (2017 perm/sec)   p_kst 4.181818e-04   p_cons 4.817586e-01   p_joint 1.737374e-04

Joint ci ratio: 2.946190e-01	ci left: 1.509597e-04	ci right 2.040066e-04	k: 176	n:1000000
Cons ci ratio: 4.066125e-03	ci left: 4.807282e-01	ci right 4.826879e-01	k: 481708	n:1000000
KS ci ratio: 1.905565e-01	ci left: 3.826999e-04	ci right 4.642393e-04	k: 422	n:1000000
NEU2   1000000 perm   499 sec   (2003 perm/sec)   p_kst 4.220000e-04   p_cons 4.817080e-01   p_joint 1.760000e-04

Joint ci ratio: 2.937904e-01	ci left: 1.503820e-04	ci right 2.030497e-04	k: 177	n:1010000
Cons ci ratio: 4.045617e-03	ci left: 4.807736e-01	ci right 4.827235e-01	k: 486566	n:1010000
KS ci ratio: 1.901078e-01	ci left: 3.807966e-04	ci right 4.617174e-04	k: 424	n:1010000
NEU2   1010000 perm   508 sec   (1990 perm/sec)   p_kst 4.198020e-04   p_cons 4.817485e-01   p_joint 1.752475e-04

Joint ci ratio: 2.921536e-01	ci left: 1.507244e-04	ci right 2.031635e-04	k: 179	n:1020000
Cons ci ratio: 4.025543e-03	ci left: 4.808024e-01	ci right 4.827428e-01	k: 491408	n:1020000
KS ci ratio: 1.896623e-01	ci left: 3.789308e-04	ci right 4.592447e-04	k: 426	n:1020000
NEU2   1020000 perm   516 sec   (1976 perm/sec)   p_kst 4.176471e-04   p_cons 4.817725e-01   p_joint 1.754902e-04

Joint ci ratio: 2.897489e-01	ci left: 1.519612e-04	ci right 2.043156e-04	k: 182	n:1030000
Cons ci ratio: 4.005633e-03	ci left: 4.808472e-01	ci right 4.827781e-01	k: 496267	n:1030000
KS ci ratio: 1.885614e-01	ci left: 3.798764e-04	ci right 4.598699e-04	k: 431	n:1030000
NEU2   1030000 perm   525 sec   (1962 perm/sec)   p_kst 4.184466e-04   p_cons 4.818126e-01   p_joint 1.766990e-04

Joint ci ratio: 2.874025e-01	ci left: 1.531759e-04	ci right 2.054438e-04	k: 185	n:1040000
Cons ci ratio: 3.986990e-03	ci left: 4.807691e-01	ci right 4.826906e-01	k: 500999	n:1040000
KS ci ratio: 1.876945e-01	ci left: 3.798888e-04	ci right 4.594752e-04	k: 435	n:1040000
NEU2   1040000 perm   534 sec   (1948 perm/sec)   p_kst 4.182692e-04   p_cons 4.817298e-01   p_joint 1.778846e-04

Joint ci ratio: 2.874027e-01	ci left: 1.517170e-04	ci right 2.034873e-04	k: 185	n:1050000
Cons ci ratio: 3.967537e-03	ci left: 4.808267e-01	ci right 4.827391e-01	k: 505872	n:1050000
KS ci ratio: 1.868394e-01	ci left: 3.799017e-04	ci right 4.590871e-04	k: 439	n:1050000
NEU2   1050000 perm   542 sec   (1936 perm/sec)   p_kst 4.180952e-04   p_cons 4.817829e-01   p_joint 1.761905e-04

Joint ci ratio: 2.836156e-01	ci left: 1.546651e-04	ci right 2.066213e-04	k: 190	n:1060000
Cons ci ratio: 3.949030e-03	ci left: 4.807993e-01	ci right 4.827027e-01	k: 510656	n:1060000
KS ci ratio: 1.847513e-01	ci left: 3.853131e-04	ci right 4.646282e-04	k: 449	n:1060000
NEU2   1060000 perm   551 sec   (1924 perm/sec)   p_kst 4.235849e-04   p_cons 4.817509e-01   p_joint 1.792453e-04

Joint ci ratio: 2.821422e-01	ci left: 1.549562e-04	ci right 2.066917e-04	k: 192	n:1070000
Cons ci ratio: 3.930758e-03	ci left: 4.807753e-01	ci right 4.826697e-01	k: 515443	n:1070000
KS ci ratio: 1.839356e-01	ci left: 3.852778e-04	ci right 4.641965e-04	k: 453	n:1070000
NEU2   1070000 perm   560 sec   (1911 perm/sec)   p_kst 4.233645e-04   p_cons 4.817224e-01   p_joint 1.794393e-04

Joint ci ratio: 2.814142e-01	ci left: 1.543819e-04	ci right 2.057691e-04	k: 193	n:1080000
Cons ci ratio: 3.912614e-03	ci left: 4.807674e-01	ci right 4.826531e-01	k: 520247	n:1080000
KS ci ratio: 1.833310e-01	ci left: 3.843605e-04	ci right 4.628038e-04	k: 456	n:1080000
NEU2   1080000 perm   569 sec   (1899 perm/sec)   p_kst 4.222222e-04   p_cons 4.817102e-01   p_joint 1.787037e-04

Joint ci ratio: 2.814144e-01	ci left: 1.529655e-04	ci right 2.038813e-04	k: 193	n:1090000
Cons ci ratio: 3.894661e-03	ci left: 4.807671e-01	ci right 4.826440e-01	k: 525059	n:1090000
KS ci ratio: 1.819426e-01	ci left: 3.869627e-04	ci right 4.652731e-04	k: 463	n:1090000
NEU2   1090000 perm   578 sec   (1887 perm/sec)   p_kst 4.247706e-04   p_cons 4.817055e-01   p_joint 1.770642e-04

Joint ci ratio: 2.792633e-01	ci left: 1.541105e-04	ci right 2.049463e-04	k: 196	n:1100000
Cons ci ratio: 3.876848e-03	ci left: 4.807804e-01	ci right 4.826488e-01	k: 529886	n:1100000
KS ci ratio: 1.805853e-01	ci left: 3.895198e-04	ci right 4.676953e-04	k: 470	n:1100000
NEU2   1100000 perm   587 sec   (1875 perm/sec)   p_kst 4.272727e-04   p_cons 4.817145e-01   p_joint 1.781818e-04

Joint ci ratio: 2.785573e-01	ci left: 1.535600e-04	ci right 2.040637e-04	k: 197	n:1110000
Cons ci ratio: 3.859450e-03	ci left: 4.807710e-01	ci right 4.826309e-01	k: 534688	n:1110000
KS ci ratio: 1.796343e-01	ci left: 3.903121e-04	ci right 4.681892e-04	k: 475	n:1110000
NEU2   1110000 perm   596 sec   (1863 perm/sec)   p_kst 4.279279e-04   p_cons 4.817009e-01   p_joint 1.774775e-04

Joint ci ratio: 2.778566e-01	ci left: 1.530195e-04	ci right 2.031967e-04	k: 198	n:1120000
Cons ci ratio: 3.842945e-03	ci left: 4.806760e-01	ci right 4.825276e-01	k: 539394	n:1120000
KS ci ratio: 1.790710e-01	ci left: 3.893855e-04	ci right 4.668077e-04	k: 478	n:1120000
NEU2   1120000 perm   605 sec   (1852 perm/sec)   p_kst 4.267857e-04   p_cons 4.816018e-01   p_joint 1.767857e-04

Joint ci ratio: 2.757855e-01	ci left: 1.541360e-04	ci right 2.042372e-04	k: 201	n:1130000
Cons ci ratio: 3.826195e-03	ci left: 4.806421e-01	ci right 4.824855e-01	k: 544167	n:1130000
KS ci ratio: 1.783280e-01	ci left: 3.893211e-04	ci right 4.663746e-04	k: 482	n:1130000
NEU2   1130000 perm   614 sec   (1840 perm/sec)   p_kst 4.265487e-04   p_cons 4.815637e-01   p_joint 1.778761e-04

Joint ci ratio: 2.757857e-01	ci left: 1.527839e-04	ci right 2.024456e-04	k: 201	n:1140000
Cons ci ratio: 3.809347e-03	ci left: 4.806499e-01	ci right 4.824852e-01	k: 548987	n:1140000
KS ci ratio: 1.779601e-01	ci left: 3.875821e-04	ci right 4.641162e-04	k: 484	n:1140000
NEU2   1140000 perm   623 sec   (1829 perm/sec)   p_kst 4.245614e-04   p_cons 4.815675e-01   p_joint 1.763158e-04

Joint ci ratio: 2.751057e-01	ci left: 1.522648e-04	ci right 2.016147e-04	k: 202	n:1150000
Cons ci ratio: 3.792581e-03	ci left: 4.806760e-01	ci right 4.825033e-01	k: 553828	n:1150000
KS ci ratio: 1.768693e-01	ci left: 3.891976e-04	ci right 4.655292e-04	k: 490	n:1150000
NEU2   1150000 perm   633 sec   (1817 perm/sec)   p_kst 4.260870e-04   p_cons 4.815896e-01   p_joint 1.756522e-04

Joint ci ratio: 2.751059e-01	ci left: 1.509522e-04	ci right 1.998767e-04	k: 202	n:1160000
Cons ci ratio: 3.776015e-03	ci left: 4.807041e-01	ci right 4.825235e-01	k: 558672	n:1160000
KS ci ratio: 1.759755e-01	ci left: 3.899624e-04	ci right 4.660165e-04	k: 495	n:1160000
NEU2   1160000 perm   642 sec   (1806 perm/sec)   p_kst 4.267241e-04   p_cons 4.816138e-01   p_joint 1.741379e-04

Joint ci ratio: 2.730952e-01	ci left: 1.520499e-04	ci right 2.009082e-04	k: 205	n:1170000
Cons ci ratio: 3.759774e-03	ci left: 4.807173e-01	ci right 4.825289e-01	k: 563499	n:1170000
KS ci ratio: 1.752702e-01	ci left: 3.898979e-04	ci right 4.656024e-04	k: 499	n:1170000
NEU2   1170000 perm   652 sec   (1795 perm/sec)   p_kst 4.264957e-04   p_cons 4.816231e-01   p_joint 1.752137e-04

Joint ci ratio: 2.724348e-01	ci left: 1.515508e-04	ci right 2.001109e-04	k: 206	n:1180000
Cons ci ratio: 3.743613e-03	ci left: 4.807472e-01	ci right 4.825512e-01	k: 568346	n:1180000
KS ci ratio: 1.750954e-01	ci left: 3.874040e-04	ci right 4.625412e-04	k: 500	n:1180000
NEU2   1180000 perm   661 sec   (1785 perm/sec)   p_kst 4.237288e-04   p_cons 4.816492e-01   p_joint 1.745763e-04

Joint ci ratio: 2.692026e-01	ci left: 1.541938e-04	ci right 2.029155e-04	k: 211	n:1190000
Cons ci ratio: 3.727296e-03	ci left: 4.808254e-01	ci right 4.826217e-01	k: 573251	n:1190000
KS ci ratio: 1.738847e-01	ci left: 3.897740e-04	ci right 4.647933e-04	k: 507	n:1190000
NEU2   1190000 perm   671 sec   (1774 perm/sec)   p_kst 4.260504e-04   p_cons 4.817235e-01   p_joint 1.773109e-04

Joint ci ratio: 2.685700e-01	ci left: 1.536860e-04	ci right 2.021139e-04	k: 212	n:1200000
Cons ci ratio: 3.712775e-03	ci left: 4.806890e-01	ci right 4.824778e-01	k: 577900	n:1200000
KS ci ratio: 1.735436e-01	ci left: 3.881200e-04	ci right 4.626591e-04	k: 509	n:1200000
NEU2   1200000 perm   681 sec   (1763 perm/sec)   p_kst 4.241667e-04   p_cons 4.815833e-01   p_joint 1.766667e-04

Joint ci ratio: 2.679419e-01	ci left: 1.531867e-04	ci right 2.013255e-04	k: 213	n:1210000
Cons ci ratio: 3.697688e-03	ci left: 4.806540e-01	ci right 4.824354e-01	k: 582669	n:1210000
KS ci ratio: 1.730355e-01	ci left: 3.872842e-04	ci right 4.614223e-04	k: 512	n:1210000
NEU2   1210000 perm   690 sec   (1753 perm/sec)   p_kst 4.231405e-04   p_cons 4.815446e-01   p_joint 1.760331e-04

Joint ci ratio: 2.679421e-01	ci left: 1.519311e-04	ci right 1.996753e-04	k: 213	n:1220000
Cons ci ratio: 3.682027e-03	ci left: 4.807220e-01	ci right 4.824961e-01	k: 587563	n:1220000
KS ci ratio: 1.728673e-01	ci left: 3.848939e-04	ci right 4.584953e-04	k: 513	n:1220000
NEU2   1220000 perm   700 sec   (1743 perm/sec)   p_kst 4.204918e-04   p_cons 4.816090e-01   p_joint 1.745902e-04

Joint ci ratio: 2.673183e-01	ci left: 1.514543e-04	ci right 1.989193e-04	k: 214	n:1230000
Cons ci ratio: 3.666976e-03	ci left: 4.807329e-01	ci right 4.824997e-01	k: 592388	n:1230000
KS ci ratio: 1.721986e-01	ci left: 3.848763e-04	ci right 4.581600e-04	k: 517	n:1230000
NEU2   1230000 perm   710 sec   (1733 perm/sec)   p_kst 4.203252e-04   p_cons 4.816163e-01   p_joint 1.739837e-04

Joint ci ratio: 2.660835e-01	ci left: 1.517380e-04	ci right 1.990356e-04	k: 216	n:1240000
Cons ci ratio: 3.652184e-03	ci left: 4.807331e-01	ci right 4.824928e-01	k: 597200	n:1240000
KS ci ratio: 1.712097e-01	ci left: 3.864032e-04	ci right 4.595116e-04	k: 523	n:1240000
NEU2   1240000 perm   720 sec   (1722 perm/sec)   p_kst 4.217742e-04   p_cons 4.816129e-01   p_joint 1.741935e-04

Joint ci ratio: 2.654726e-01	ci left: 1.512708e-04	ci right 1.982965e-04	k: 217	n:1250000
Cons ci ratio: 3.637815e-03	ci left: 4.806997e-01	ci right 4.824524e-01	k: 601970	n:1250000
KS ci ratio: 1.703986e-01	ci left: 3.871410e-04	ci right 4.600063e-04	k: 528	n:1250000
NEU2   1250000 perm   730 sec   (1713 perm/sec)   p_kst 4.224000e-04   p_cons 4.815760e-01   p_joint 1.736000e-04

Joint ci ratio: 2.636645e-01	ci left: 1.522933e-04	ci right 1.992612e-04	k: 220	n:1260000
Cons ci ratio: 3.622941e-03	ci left: 4.807597e-01	ci right 4.825054e-01	k: 606857	n:1260000
KS ci ratio: 1.695990e-01	ci left: 3.878679e-04	ci right 4.604924e-04	k: 533	n:1260000
NEU2   1260000 perm   740 sec   (1702 perm/sec)   p_kst 4.230159e-04   p_cons 4.816325e-01   p_joint 1.746032e-04

Joint ci ratio: 2.636647e-01	ci left: 1.510941e-04	ci right 1.976923e-04	k: 220	n:1270000
Cons ci ratio: 3.608844e-03	ci left: 4.807362e-01	ci right 4.824750e-01	k: 611639	n:1270000
KS ci ratio: 1.694406e-01	ci left: 3.855678e-04	ci right 4.576873e-04	k: 534	n:1270000
NEU2   1270000 perm   750 sec   (1692 perm/sec)   p_kst 4.204724e-04   p_cons 4.816055e-01   p_joint 1.732283e-04

Joint ci ratio: 2.618930e-01	ci left: 1.521031e-04	ci right 1.986456e-04	k: 223	n:1280000
Cons ci ratio: 3.594714e-03	ci left: 4.807403e-01	ci right 4.824723e-01	k: 616456	n:1280000
KS ci ratio: 1.688107e-01	ci left: 3.855483e-04	ci right 4.573688e-04	k: 538	n:1280000
NEU2   1280000 perm   761 sec   (1683 perm/sec)   p_kst 4.203125e-04   p_cons 4.816063e-01   p_joint 1.742188e-04

Joint ci ratio: 2.607316e-01	ci left: 1.523728e-04	ci right 1.987574e-04	k: 225	n:1290000
Cons ci ratio: 3.580404e-03	ci left: 4.807924e-01	ci right 4.825177e-01	k: 621335	n:1290000
KS ci ratio: 1.680331e-01	ci left: 3.862721e-04	ci right 4.578625e-04	k: 543	n:1290000
NEU2   1290000 perm   771 sec   (1673 perm/sec)   p_kst 4.209302e-04   p_cons 4.816550e-01   p_joint 1.744186e-04

Joint ci ratio: 2.595855e-01	ci left: 1.526389e-04	ci right 1.988670e-04	k: 227	n:1300000
Cons ci ratio: 3.566995e-03	ci left: 4.807415e-01	ci right 4.824601e-01	k: 626081	n:1300000
KS ci ratio: 1.674187e-01	ci left: 3.862486e-04	ci right 4.575464e-04	k: 547	n:1300000
NEU2   1300000 perm   782 sec   (1663 perm/sec)   p_kst 4.207692e-04   p_cons 4.816008e-01   p_joint 1.746154e-04

Joint ci ratio: 2.578942e-01	ci left: 1.536153e-04	ci right 1.997872e-04	k: 230	n:1310000
Cons ci ratio: 3.553061e-03	ci left: 4.807860e-01	ci right 4.824980e-01	k: 630951	n:1310000
KS ci ratio: 1.668111e-01	ci left: 3.862258e-04	ci right 4.572347e-04	k: 551	n:1310000
NEU2   1310000 perm   792 sec   (1654 perm/sec)   p_kst 4.206107e-04   p_cons 4.816420e-01   p_joint 1.755725e-04

Joint ci ratio: 2.556897e-01	ci left: 1.552868e-04	ci right 2.014986e-04	k: 234	n:1320000
Cons ci ratio: 3.539960e-03	ci left: 4.807352e-01	ci right 4.824407e-01	k: 635696	n:1320000
KS ci ratio: 1.662100e-01	ci left: 3.862039e-04	ci right 4.569273e-04	k: 555	n:1320000
NEU2   1320000 perm   803 sec   (1644 perm/sec)   p_kst 4.204545e-04   p_cons 4.815879e-01   p_joint 1.772727e-04

Joint ci ratio: 2.546086e-01	ci left: 1.555268e-04	ci right 2.015833e-04	k: 236	n:1330000
Cons ci ratio: 3.526260e-03	ci left: 4.807903e-01	ci right 4.824894e-01	k: 640581	n:1330000
KS ci ratio: 1.654676e-01	ci left: 3.869035e-04	ci right 4.574070e-04	k: 560	n:1330000
NEU2   1330000 perm   814 sec   (1635 perm/sec)   p_kst 4.210526e-04   p_cons 4.816398e-01   p_joint 1.774436e-04

Joint ci ratio: 2.535410e-01	ci left: 1.557637e-04	ci right 2.016663e-04	k: 238	n:1340000
Cons ci ratio: 3.513363e-03	ci left: 4.807529e-01	ci right 4.824457e-01	k: 645343	n:1340000
KS ci ratio: 1.648808e-01	ci left: 3.868779e-04	ci right 4.571019e-04	k: 564	n:1340000
NEU2   1340000 perm   824 sec   (1626 perm/sec)   p_kst 4.208955e-04   p_cons 4.815993e-01   p_joint 1.776119e-04

Joint ci ratio: 2.524868e-01	ci left: 1.559974e-04	ci right 2.017477e-04	k: 240	n:1350000
Cons ci ratio: 3.499719e-03	ci left: 4.808427e-01	ci right 4.825292e-01	k: 650276	n:1350000
KS ci ratio: 1.638686e-01	ci left: 3.889840e-04	ci right 4.591142e-04	k: 571	n:1350000
NEU2   1350000 perm   835 sec   (1617 perm/sec)   p_kst 4.229630e-04   p_cons 4.816859e-01   p_joint 1.777778e-04

Joint ci ratio: 2.509297e-01	ci left: 1.569171e-04	ci right 2.026090e-04	k: 243	n:1360000
Cons ci ratio: 3.486571e-03	ci left: 4.808827e-01	ci right 4.825630e-01	k: 655143	n:1360000
KS ci ratio: 1.632987e-01	ci left: 3.889446e-04	ci right 4.587998e-04	k: 575	n:1360000
NEU2   1360000 perm   846 sec   (1608 perm/sec)   p_kst 4.227941e-04   p_cons 4.817228e-01   p_joint 1.786765e-04

Joint ci ratio: 2.509298e-01	ci left: 1.557718e-04	ci right 2.011301e-04	k: 243	n:1370000
Cons ci ratio: 3.473627e-03	ci left: 4.809141e-01	ci right 4.825882e-01	k: 659999	n:1370000
KS ci ratio: 1.631573e-01	ci left: 3.868057e-04	ci right 4.562107e-04	k: 576	n:1370000
NEU2   1370000 perm   857 sec   (1599 perm/sec)   p_kst 4.204380e-04   p_cons 4.817511e-01   p_joint 1.773723e-04

Joint ci ratio: 2.504173e-01	ci left: 1.553221e-04	ci right 2.004427e-04	k: 244	n:1380000
Cons ci ratio: 3.461402e-03	ci left: 4.808617e-01	ci right 4.825297e-01	k: 664740	n:1380000
KS ci ratio: 1.627349e-01	ci left: 3.860880e-04	ci right 4.551673e-04	k: 579	n:1380000
NEU2   1380000 perm   868 sec   (1590 perm/sec)   p_kst 4.195652e-04   p_cons 4.816957e-01   p_joint 1.768116e-04

Joint ci ratio: 2.504175e-01	ci left: 1.542047e-04	ci right 1.990007e-04	k: 244	n:1390000
Cons ci ratio: 3.449127e-03	ci left: 4.808359e-01	ci right 4.824980e-01	k: 669517	n:1390000
KS ci ratio: 1.625950e-01	ci left: 3.840005e-04	ci right 4.526415e-04	k: 580	n:1390000
NEU2   1390000 perm   879 sec   (1582 perm/sec)   p_kst 4.172662e-04   p_cons 4.816669e-01   p_joint 1.755396e-04

Joint ci ratio: 2.504176e-01	ci left: 1.531032e-04	ci right 1.975793e-04	k: 244	n:1400000
Cons ci ratio: 3.437139e-03	ci left: 4.807877e-01	ci right 4.824438e-01	k: 674262	n:1400000
KS ci ratio: 1.624554e-01	ci left: 3.819428e-04	ci right 4.501517e-04	k: 581	n:1400000
NEU2   1400000 perm   890 sec   (1573 perm/sec)   p_kst 4.150000e-04   p_cons 4.816157e-01   p_joint 1.742857e-04

Joint ci ratio: 2.504178e-01	ci left: 1.520173e-04	ci right 1.961780e-04	k: 244	n:1410000
Cons ci ratio: 3.424867e-03	ci left: 4.807998e-01	ci right 4.824500e-01	k: 679091	n:1410000
KS ci ratio: 1.620384e-01	ci left: 3.812753e-04	ci right 4.491731e-04	k: 584	n:1410000
NEU2   1410000 perm   901 sec   (1565 perm/sec)   p_kst 4.141844e-04   p_cons 4.816248e-01   p_joint 1.730496e-04

Joint ci ratio: 2.504179e-01	ci left: 1.509468e-04	ci right 1.947965e-04	k: 244	n:1420000
Cons ci ratio: 3.412956e-03	ci left: 4.807779e-01	ci right 4.824222e-01	k: 683872	n:1420000
KS ci ratio: 1.617622e-01	ci left: 3.799416e-04	ci right 4.474754e-04	k: 586	n:1420000
NEU2   1420000 perm   912 sec   (1556 perm/sec)   p_kst 4.126761e-04   p_cons 4.816000e-01   p_joint 1.718310e-04

Joint ci ratio: 2.494020e-01	ci left: 1.512022e-04	ci right 1.949203e-04	k: 246	n:1430000
Cons ci ratio: 3.400806e-03	ci left: 4.808094e-01	ci right 4.824480e-01	k: 688729	n:1430000
KS ci ratio: 1.612139e-01	ci left: 3.799688e-04	ci right 4.472563e-04	k: 590	n:1430000
NEU2   1430000 perm   924 sec   (1548 perm/sec)   p_kst 4.125874e-04   p_cons 4.816287e-01   p_joint 1.720280e-04

Joint ci ratio: 2.494021e-01	ci left: 1.501522e-04	ci right 1.935667e-04	k: 246	n:1440000
Cons ci ratio: 3.388908e-03	ci left: 4.808225e-01	ci right 4.824554e-01	k: 693560	n:1440000
KS ci ratio: 1.610778e-01	ci left: 3.779966e-04	ci right 4.448729e-04	k: 591	n:1440000
NEU2   1440000 perm   935 sec   (1540 perm/sec)   p_kst 4.104167e-04   p_cons 4.816389e-01   p_joint 1.708333e-04

Joint ci ratio: 2.483985e-01	ci left: 1.504099e-04	ci right 1.936969e-04	k: 248	n:1450000
Cons ci ratio: 3.377148e-03	ci left: 4.808333e-01	ci right 4.824606e-01	k: 698388	n:1450000
KS ci ratio: 1.601337e-01	ci left: 3.800233e-04	ci right 4.468262e-04	k: 598	n:1450000
NEU2   1450000 perm   946 sec   (1532 perm/sec)   p_kst 4.124138e-04   p_cons 4.816469e-01   p_joint 1.710345e-04

Joint ci ratio: 2.469154e-01	ci left: 1.513070e-04	ci right 1.945523e-04	k: 251	n:1460000
Cons ci ratio: 3.365855e-03	ci left: 4.807926e-01	ci right 4.824143e-01	k: 703141	n:1460000
KS ci ratio: 1.596017e-01	ci left: 3.800505e-04	ci right 4.466150e-04	k: 602	n:1460000
NEU2   1460000 perm   958 sec   (1524 perm/sec)   p_kst 4.123288e-04   p_cons 4.816034e-01   p_joint 1.719178e-04

Joint ci ratio: 2.469155e-01	ci left: 1.502777e-04	ci right 1.932288e-04	k: 251	n:1470000
Cons ci ratio: 3.353967e-03	ci left: 4.808580e-01	ci right 4.824741e-01	k: 708049	n:1470000
KS ci ratio: 1.592062e-01	ci left: 3.794245e-04	ci right 4.456989e-04	k: 605	n:1470000
NEU2   1470000 perm   970 sec   (1516 perm/sec)   p_kst 4.115646e-04   p_cons 4.816660e-01   p_joint 1.707483e-04

Joint ci ratio: 2.459415e-01	ci left: 1.505302e-04	ci right 1.933578e-04	k: 253	n:1480000
Cons ci ratio: 3.342539e-03	ci left: 4.808724e-01	ci right 4.824831e-01	k: 712883	n:1480000
KS ci ratio: 1.586834e-01	ci left: 3.794561e-04	ci right 4.454976e-04	k: 609	n:1480000
NEU2   1480000 perm   981 sec   (1508 perm/sec)   p_kst 4.114865e-04   p_cons 4.816777e-01   p_joint 1.709459e-04

Joint ci ratio: 2.449789e-01	ci left: 1.507797e-04	ci right 1.934848e-04	k: 255	n:1490000
Cons ci ratio: 3.330980e-03	ci left: 4.809236e-01	ci right 4.825288e-01	k: 717772	n:1490000
KS ci ratio: 1.580370e-01	ci left: 3.801321e-04	ci right 4.459962e-04	k: 614	n:1490000
NEU2   1490000 perm   993 sec   (1500 perm/sec)   p_kst 4.120805e-04   p_cons 4.817262e-01   p_joint 1.711409e-04

Joint ci ratio: 2.449790e-01	ci left: 1.497745e-04	ci right 1.921949e-04	k: 255	n:1500000
Cons ci ratio: 3.319881e-03	ci left: 4.809228e-01	ci right 4.825227e-01	k: 722584	n:1500000
KS ci ratio: 1.576530e-01	ci left: 3.795189e-04	ci right 4.451019e-04	k: 617	n:1500000
NEU2   1500000 perm   1005 sec   (1493 perm/sec)   p_kst 4.113333e-04   p_cons 4.817227e-01   p_joint 1.700000e-04

Joint ci ratio: 2.435560e-01	ci left: 1.506478e-04	ci right 1.930302e-04	k: 258	n:1510000
Cons ci ratio: 3.308827e-03	ci left: 4.809319e-01	ci right 4.825265e-01	k: 727411	n:1510000
KS ci ratio: 1.570190e-01	ci left: 3.801864e-04	ci right 4.455957e-04	k: 622	n:1510000
NEU2   1510000 perm   1017 sec   (1485 perm/sec)   p_kst 4.119205e-04   p_cons 4.817291e-01   p_joint 1.708609e-04

Joint ci ratio: 2.435561e-01	ci left: 1.496567e-04	ci right 1.917603e-04	k: 258	n:1520000
Cons ci ratio: 3.297844e-03	ci left: 4.809468e-01	ci right 4.825362e-01	k: 732247	n:1520000
KS ci ratio: 1.568933e-01	ci left: 3.783172e-04	ci right 4.433479e-04	k: 623	n:1520000
NEU2   1520000 perm   1028 sec   (1478 perm/sec)   p_kst 4.098684e-04   p_cons 4.817414e-01   p_joint 1.697368e-04

Joint ci ratio: 2.435563e-01	ci left: 1.486785e-04	ci right 1.905070e-04	k: 258	n:1530000
Cons ci ratio: 3.287111e-03	ci left: 4.809400e-01	ci right 4.825241e-01	k: 737050	n:1530000
KS ci ratio: 1.568935e-01	ci left: 3.758445e-04	ci right 4.404502e-04	k: 623	n:1530000
NEU2   1530000 perm   1041 sec   (1470 perm/sec)   p_kst 4.071895e-04   p_cons 4.817320e-01   p_joint 1.686275e-04

Joint ci ratio: 2.430875e-01	ci left: 1.483228e-04	ci right 1.899588e-04	k: 259	n:1540000
Cons ci ratio: 3.276239e-03	ci left: 4.809703e-01	ci right 4.825493e-01	k: 741910	n:1540000
KS ci ratio: 1.562687e-01	ci left: 3.765235e-04	ci right 4.409640e-04	k: 628	n:1540000
NEU2   1540000 perm   1053 sec   (1463 perm/sec)   p_kst 4.077922e-04   p_cons 4.817597e-01   p_joint 1.681818e-04

Joint ci ratio: 2.430876e-01	ci left: 1.473659e-04	ci right 1.887333e-04	k: 259	n:1550000
Cons ci ratio: 3.265677e-03	ci left: 4.809692e-01	ci right 4.825431e-01	k: 746722	n:1550000
KS ci ratio: 1.561447e-01	ci left: 3.747143e-04	ci right 4.387895e-04	k: 629	n:1550000
NEU2   1550000 perm   1065 sec   (1455 perm/sec)   p_kst 4.058065e-04   p_cons 4.817561e-01   p_joint 1.670968e-04

Joint ci ratio: 2.426215e-01	ci left: 1.470232e-04	ci right 1.882034e-04	k: 260	n:1560000
Cons ci ratio: 3.255204e-03	ci left: 4.809701e-01	ci right 4.825389e-01	k: 751537	n:1560000
KS ci ratio: 1.557743e-01	ci left: 3.741603e-04	ci right 4.379748e-04	k: 632	n:1560000
NEU2   1560000 perm   1077 sec   (1448 perm/sec)   p_kst 4.051282e-04   p_cons 4.817545e-01   p_joint 1.666667e-04

Joint ci ratio: 2.407833e-01	ci left: 1.484803e-04	ci right 1.897064e-04	k: 264	n:1570000
Cons ci ratio: 3.244533e-03	ci left: 4.810168e-01	ci right 4.825807e-01	k: 756424	n:1570000
KS ci ratio: 1.550412e-01	ci left: 3.754501e-04	ci right 4.391553e-04	k: 638	n:1570000
NEU2   1570000 perm   1089 sec   (1441 perm/sec)   p_kst 4.063694e-04   p_cons 4.817987e-01   p_joint 1.681529e-04

Joint ci ratio: 2.407834e-01	ci left: 1.475405e-04	ci right 1.885057e-04	k: 264	n:1580000
Cons ci ratio: 3.234487e-03	ci left: 4.809826e-01	ci right 4.825415e-01	k: 761184	n:1580000
KS ci ratio: 1.543183e-01	ci left: 3.767244e-04	ci right 4.403201e-04	k: 644	n:1580000
NEU2   1580000 perm   1102 sec   (1434 perm/sec)   p_kst 4.075949e-04   p_cons 4.817620e-01   p_joint 1.670886e-04

Joint ci ratio: 2.398799e-01	ci left: 1.477947e-04	ci right 1.886536e-04	k: 266	n:1590000
Cons ci ratio: 3.224591e-03	ci left: 4.809400e-01	ci right 4.824940e-01	k: 765930	n:1590000
KS ci ratio: 1.538420e-01	ci left: 3.767738e-04	ci right 4.401635e-04	k: 648	n:1590000
NEU2   1590000 perm   1114 sec   (1427 perm/sec)   p_kst 4.075472e-04   p_cons 4.817170e-01   p_joint 1.672956e-04

Joint ci ratio: 2.385434e-01	ci left: 1.486336e-04	ci right 1.894617e-04	k: 269	n:1600000
Cons ci ratio: 3.214728e-03	ci left: 4.809067e-01	ci right 4.824558e-01	k: 770690	n:1600000
KS ci ratio: 1.530189e-01	ci left: 3.786260e-04	ci right 4.419552e-04	k: 655	n:1600000
NEU2   1600000 perm   1127 sec   (1420 perm/sec)   p_kst 4.093750e-04   p_cons 4.816813e-01   p_joint 1.681250e-04

Joint ci ratio: 2.385435e-01	ci left: 1.477104e-04	ci right 1.882849e-04	k: 269	n:1610000
Cons ci ratio: 3.204764e-03	ci left: 4.809037e-01	ci right 4.824479e-01	k: 775498	n:1610000
KS ci ratio: 1.530191e-01	ci left: 3.762742e-04	ci right 4.392102e-04	k: 655	n:1610000
NEU2   1610000 perm   1139 sec   (1413 perm/sec)   p_kst 4.068323e-04   p_cons 4.816758e-01   p_joint 1.670807e-04

Joint ci ratio: 2.367958e-01	ci left: 1.491208e-04	ci right 1.897385e-04	k: 273	n:1620000
Cons ci ratio: 3.195046e-03	ci left: 4.808766e-01	ci right 4.824161e-01	k: 780267	n:1620000
KS ci ratio: 1.520943e-01	ci left: 3.787014e-04	ci right 4.416256e-04	k: 663	n:1620000
NEU2   1620000 perm   1152 sec   (1406 perm/sec)   p_kst 4.092593e-04   p_cons 4.816463e-01   p_joint 1.685185e-04

Joint ci ratio: 2.359362e-01	ci left: 1.493603e-04	ci right 1.898740e-04	k: 275	n:1630000
Cons ci ratio: 3.185334e-03	ci left: 4.808627e-01	ci right 4.823975e-01	k: 785057	n:1630000
KS ci ratio: 1.517519e-01	ci left: 3.781486e-04	ci right 4.408267e-04	k: 666	n:1630000
NEU2   1630000 perm   1165 sec   (1400 perm/sec)   p_kst 4.085890e-04   p_cons 4.816301e-01   p_joint 1.687117e-04

Joint ci ratio: 2.355100e-01	ci left: 1.490233e-04	ci right 1.893620e-04	k: 276	n:1640000
Cons ci ratio: 3.175523e-03	ci left: 4.808783e-01	ci right 4.824084e-01	k: 789895	n:1640000
KS ci ratio: 1.514118e-01	ci left: 3.776027e-04	ci right 4.400373e-04	k: 669	n:1640000
NEU2   1640000 perm   1177 sec   (1393 perm/sec)   p_kst 4.079268e-04   p_cons 4.816433e-01   p_joint 1.682927e-04

Joint ci ratio: 2.350861e-01	ci left: 1.486904e-04	ci right 1.888560e-04	k: 277	n:1650000
Cons ci ratio: 3.166084e-03	ci left: 4.808495e-01	ci right 4.823749e-01	k: 794660	n:1650000
KS ci ratio: 1.508500e-01	ci left: 3.782299e-04	ci right 4.405152e-04	k: 674	n:1650000
NEU2   1650000 perm   1190 sec   (1386 perm/sec)   p_kst 4.084848e-04   p_cons 4.816121e-01   p_joint 1.678788e-04

Joint ci ratio: 2.338277e-01	ci left: 1.494958e-04	ci right 1.896315e-04	k: 280	n:1660000
Cons ci ratio: 3.156598e-03	ci left: 4.808414e-01	ci right 4.823622e-01	k: 799459	n:1660000
KS ci ratio: 1.500737e-01	ci left: 3.800095e-04	ci right 4.422370e-04	k: 681	n:1660000
NEU2   1660000 perm   1203 sec   (1380 perm/sec)   p_kst 4.102410e-04   p_cons 4.816018e-01   p_joint 1.686747e-04

Joint ci ratio: 2.330000e-01	ci left: 1.497282e-04	ci right 1.897635e-04	k: 282	n:1670000
Cons ci ratio: 3.147160e-03	ci left: 4.808395e-01	ci right 4.823558e-01	k: 804268	n:1670000
KS ci ratio: 1.496355e-01	ci left: 3.800394e-04	ci right 4.420738e-04	k: 685	n:1670000
NEU2   1670000 perm   1216 sec   (1373 perm/sec)   p_kst 4.101796e-04   p_cons 4.815976e-01   p_joint 1.688623e-04

Joint ci ratio: 2.330001e-01	ci left: 1.488369e-04	ci right 1.886340e-04	k: 282	n:1680000
Cons ci ratio: 3.137644e-03	ci left: 4.808632e-01	ci right 4.823749e-01	k: 809120	n:1680000
KS ci ratio: 1.492012e-01	ci left: 3.800692e-04	ci right 4.419123e-04	k: 689	n:1680000
NEU2   1680000 perm   1229 sec   (1367 perm/sec)   p_kst 4.101190e-04   p_cons 4.816190e-01   p_joint 1.678571e-04

Joint ci ratio: 2.325896e-01	ci left: 1.485135e-04	ci right 1.881440e-04	k: 283	n:1690000
Cons ci ratio: 3.128548e-03	ci left: 4.808334e-01	ci right 4.823406e-01	k: 813882	n:1690000
KS ci ratio: 1.487706e-01	ci left: 3.800989e-04	ci right 4.417525e-04	k: 693	n:1690000
NEU2   1690000 perm   1242 sec   (1361 perm/sec)   p_kst 4.100592e-04   p_cons 4.815870e-01   p_joint 1.674556e-04

Joint ci ratio: 2.317749e-01	ci left: 1.487479e-04	ci right 1.882820e-04	k: 285	n:1700000
Cons ci ratio: 3.119395e-03	ci left: 4.808257e-01	ci right 4.823285e-01	k: 818681	n:1700000
KS ci ratio: 1.484501e-01	ci left: 3.795621e-04	ci right 4.409843e-04	k: 696	n:1700000
NEU2   1700000 perm   1255 sec   (1354 perm/sec)   p_kst 4.094118e-04   p_cons 4.815771e-01   p_joint 1.676471e-04

Joint ci ratio: 2.301707e-01	ci left: 1.500819e-04	ci right 1.896552e-04	k: 289	n:1710000
Cons ci ratio: 3.110300e-03	ci left: 4.808216e-01	ci right 4.823200e-01	k: 823486	n:1710000
KS ci ratio: 1.480260e-01	ci left: 3.795949e-04	ci right 4.408313e-04	k: 700	n:1710000
NEU2   1710000 perm   1269 sec   (1348 perm/sec)   p_kst 4.093567e-04   p_cons 4.815708e-01   p_joint 1.690058e-04

Joint ci ratio: 2.293811e-01	ci left: 1.503052e-04	ci right 1.897822e-04	k: 291	n:1720000
Cons ci ratio: 3.101064e-03	ci left: 4.808530e-01	ci right 4.823470e-01	k: 828352	n:1720000
KS ci ratio: 1.476054e-01	ci left: 3.796275e-04	ci right 4.406798e-04	k: 704	n:1720000
NEU2   1720000 perm   1282 sec   (1342 perm/sec)   p_kst 4.093023e-04   p_cons 4.816000e-01   p_joint 1.691860e-04

Joint ci ratio: 2.282117e-01	ci left: 1.510711e-04	ci right 1.905185e-04	k: 294	n:1730000
Cons ci ratio: 3.092067e-03	ci left: 4.808586e-01	ci right 4.823483e-01	k: 833174	n:1730000
KS ci ratio: 1.469812e-01	ci left: 3.807735e-04	ci right 4.417285e-04	k: 710	n:1730000
NEU2   1730000 perm   1295 sec   (1336 perm/sec)   p_kst 4.104046e-04   p_cons 4.816035e-01   p_joint 1.699422e-04

Joint ci ratio: 2.274420e-01	ci left: 1.512867e-04	ci right 1.906385e-04	k: 296	n:1740000
Cons ci ratio: 3.083453e-03	ci left: 4.808148e-01	ci right 4.823002e-01	k: 837910	n:1740000
KS ci ratio: 1.466722e-01	ci left: 3.802460e-04	ci right 4.409772e-04	k: 713	n:1740000
NEU2   1740000 perm   1308 sec   (1330 perm/sec)   p_kst 4.097701e-04   p_cons 4.815575e-01   p_joint 1.701149e-04

Joint ci ratio: 2.259255e-01	ci left: 1.525781e-04	ci right 1.919644e-04	k: 300	n:1750000
Cons ci ratio: 3.074551e-03	ci left: 4.808297e-01	ci right 4.823109e-01	k: 842748	n:1750000
KS ci ratio: 1.461613e-01	ci left: 3.808256e-04	ci right 4.414191e-04	k: 718	n:1750000
NEU2   1750000 perm   1322 sec   (1324 perm/sec)   p_kst 4.102857e-04   p_cons 4.815703e-01   p_joint 1.714286e-04

Joint ci ratio: 2.259257e-01	ci left: 1.517112e-04	ci right 1.908737e-04	k: 300	n:1760000
Cons ci ratio: 3.065748e-03	ci left: 4.808411e-01	ci right 4.823180e-01	k: 847580	n:1760000
KS ci ratio: 1.459585e-01	ci left: 3.797567e-04	ci right 4.400889e-04	k: 720	n:1760000
NEU2   1760000 perm   1335 sec   (1318 perm/sec)   p_kst 4.090909e-04   p_cons 4.815795e-01   p_joint 1.704545e-04

Joint ci ratio: 2.255513e-01	ci left: 1.513871e-04	ci right 1.903922e-04	k: 301	n:1770000
Cons ci ratio: 3.057292e-03	ci left: 4.808077e-01	ci right 4.822805e-01	k: 852333	n:1770000
KS ci ratio: 1.456558e-01	ci left: 3.792442e-04	ci right 4.393593e-04	k: 723	n:1770000
NEU2   1770000 perm   1349 sec   (1312 perm/sec)   p_kst 4.084746e-04   p_cons 4.815441e-01   p_joint 1.700565e-04

Joint ci ratio: 2.248082e-01	ci left: 1.515968e-04	ci right 1.905094e-04	k: 303	n:1780000
Cons ci ratio: 3.048824e-03	ci left: 4.807882e-01	ci right 4.822568e-01	k: 857110	n:1780000
KS ci ratio: 1.450559e-01	ci left: 3.803618e-04	ci right 4.403842e-04	k: 729	n:1780000
NEU2   1780000 perm   1363 sec   (1306 perm/sec)   p_kst 4.095506e-04   p_cons 4.815225e-01   p_joint 1.702247e-04

Joint ci ratio: 2.244394e-01	ci left: 1.512771e-04	ci right 1.900352e-04	k: 304	n:1790000
Cons ci ratio: 3.040579e-03	ci left: 4.807438e-01	ci right 4.822083e-01	k: 861842	n:1790000
KS ci ratio: 1.446601e-01	ci left: 3.803906e-04	ci right 4.402395e-04	k: 733	n:1790000
NEU2   1790000 perm   1376 sec   (1301 perm/sec)   p_kst 4.094972e-04   p_cons 4.814760e-01   p_joint 1.698324e-04

Joint ci ratio: 2.229818e-01	ci left: 1.525344e-04	ci right 1.913259e-04	k: 308	n:1800000
Cons ci ratio: 3.031992e-03	ci left: 4.807670e-01	ci right 4.822275e-01	k: 866695	n:1800000
KS ci ratio: 1.441699e-01	ci left: 3.809547e-04	ci right 4.406718e-04	k: 738	n:1800000
NEU2   1800000 perm   1390 sec   (1295 perm/sec)   p_kst 4.100000e-04   p_cons 4.814972e-01   p_joint 1.711111e-04

Joint ci ratio: 2.219071e-01	ci left: 1.532568e-04	ci right 1.920185e-04	k: 311	n:1810000
Cons ci ratio: 3.023749e-03	ci left: 4.807453e-01	ci right 4.822017e-01	k: 871467	n:1810000
KS ci ratio: 1.438782e-01	ci left: 3.804477e-04	ci right 4.399543e-04	k: 741	n:1810000
NEU2   1810000 perm   1404 sec   (1289 perm/sec)   p_kst 4.093923e-04   p_cons 4.814735e-01   p_joint 1.718232e-04

Joint ci ratio: 2.219072e-01	ci left: 1.524147e-04	ci right 1.909635e-04	k: 311	n:1820000
Cons ci ratio: 3.015220e-03	ci left: 4.807821e-01	ci right 4.822345e-01	k: 876345	n:1820000
KS ci ratio: 1.436848e-01	ci left: 3.794167e-04	ci right 4.386754e-04	k: 743	n:1820000
NEU2   1820000 perm   1418 sec   (1284 perm/sec)   p_kst 4.082418e-04   p_cons 4.815082e-01   p_joint 1.708791e-04

Joint ci ratio: 2.211994e-01	ci left: 1.526141e-04	ci right 1.910734e-04	k: 313	n:1830000
Cons ci ratio: 3.007030e-03	ci left: 4.807742e-01	ci right 4.822226e-01	k: 881142	n:1830000
KS ci ratio: 1.430134e-01	ci left: 3.810313e-04	ci right 4.402405e-04	k: 750	n:1830000
NEU2   1830000 perm   1432 sec   (1278 perm/sec)   p_kst 4.098361e-04   p_cons 4.814984e-01   p_joint 1.710383e-04

Joint ci ratio: 2.201501e-01	ci left: 1.533250e-04	ci right 1.917554e-04	k: 316	n:1840000
Cons ci ratio: 2.998858e-03	ci left: 4.807745e-01	ci right 4.822190e-01	k: 885954	n:1840000
KS ci ratio: 1.421639e-01	ci left: 3.836774e-04	ci right 4.429135e-04	k: 759	n:1840000
NEU2   1840000 perm   1446 sec   (1272 perm/sec)   p_kst 4.125000e-04   p_cons 4.814967e-01   p_joint 1.717391e-04

Joint ci ratio: 2.191156e-01	ci left: 1.540287e-04	ci right 1.924296e-04	k: 319	n:1850000
Cons ci ratio: 2.990599e-03	ci left: 4.808003e-01	ci right 4.822408e-01	k: 890813	n:1850000
KS ci ratio: 1.416986e-01	ci left: 3.842102e-04	ci right 4.433180e-04	k: 764	n:1850000
NEU2   1850000 perm   1460 sec   (1267 perm/sec)   p_kst 4.129730e-04   p_cons 4.815205e-01   p_joint 1.724324e-04

Joint ci ratio: 2.180956e-01	ci left: 1.547252e-04	ci right 1.930961e-04	k: 322	n:1860000
Cons ci ratio: 2.982441e-03	ci left: 4.808204e-01	ci right 4.822571e-01	k: 895662	n:1860000
KS ci ratio: 1.413296e-01	ci left: 3.842189e-04	ci right 4.431612e-04	k: 768	n:1860000
NEU2   1860000 perm   1475 sec   (1261 perm/sec)   p_kst 4.129032e-04   p_cons 4.815387e-01   p_joint 1.731183e-04

Joint ci ratio: 2.177589e-01	ci left: 1.544033e-04	ci right 1.926274e-04	k: 323	n:1870000
Cons ci ratio: 2.974243e-03	ci left: 4.808579e-01	ci right 4.822908e-01	k: 900544	n:1870000
KS ci ratio: 1.411462e-01	ci left: 3.831960e-04	ci right 4.418987e-04	k: 770	n:1870000
NEU2   1870000 perm   1489 sec   (1256 perm/sec)   p_kst 4.117647e-04   p_cons 4.815743e-01   p_joint 1.727273e-04

Joint ci ratio: 2.177590e-01	ci left: 1.535820e-04	ci right 1.916028e-04	k: 323	n:1880000
Cons ci ratio: 2.966290e-03	ci left: 4.808653e-01	ci right 4.822943e-01	k: 905370	n:1880000
KS ci ratio: 1.408724e-01	ci left: 3.826972e-04	ci right 4.412002e-04	k: 773	n:1880000
NEU2   1880000 perm   1503 sec   (1250 perm/sec)   p_kst 4.111702e-04   p_cons 4.815798e-01   p_joint 1.718085e-04

Joint ci ratio: 2.164270e-01	ci left: 1.547708e-04	ci right 1.928203e-04	k: 327	n:1890000
Cons ci ratio: 2.958322e-03	ci left: 4.808858e-01	ci right 4.823111e-01	k: 910221	n:1890000
KS ci ratio: 1.402396e-01	ci left: 3.842458e-04	ci right 4.426996e-04	k: 780	n:1890000
NEU2   1890000 perm   1518 sec   (1245 perm/sec)   p_kst 4.126984e-04   p_cons 4.815984e-01   p_joint 1.730159e-04

Joint ci ratio: 2.160978e-01	ci left: 1.544540e-04	ci right 1.923602e-04	k: 328	n:1900000
Cons ci ratio: 2.950561e-03	ci left: 4.808819e-01	ci right 4.823034e-01	k: 915026	n:1900000
KS ci ratio: 1.398819e-01	ci left: 3.842549e-04	ci right 4.425486e-04	k: 784	n:1900000
NEU2   1900000 perm   1532 sec   (1240 perm/sec)   p_kst 4.126316e-04   p_cons 4.815926e-01   p_joint 1.726316e-04

Joint ci ratio: 2.151192e-01	ci left: 1.551312e-04	ci right 1.930084e-04	k: 331	n:1910000
Cons ci ratio: 2.942678e-03	ci left: 4.809090e-01	ci right 4.823267e-01	k: 919890	n:1910000
KS ci ratio: 1.395268e-01	ci left: 3.842642e-04	ci right 4.423990e-04	k: 788	n:1910000
NEU2   1910000 perm   1547 sec   (1235 perm/sec)   p_kst 4.125654e-04   p_cons 4.816178e-01   p_joint 1.732984e-04

Joint ci ratio: 2.147960e-01	ci left: 1.548160e-04	ci right 1.925520e-04	k: 332	n:1920000
Cons ci ratio: 2.935119e-03	ci left: 4.808914e-01	ci right 4.823055e-01	k: 924669	n:1920000
KS ci ratio: 1.392624e-01	ci left: 3.837708e-04	ci right 4.417118e-04	k: 791	n:1920000
NEU2   1920000 perm   1561 sec   (1230 perm/sec)   p_kst 4.119792e-04   p_cons 4.815984e-01   p_joint 1.729167e-04

Joint ci ratio: 2.132012e-01	ci left: 1.564657e-04	ci right 1.942836e-04	k: 337	n:1930000
Cons ci ratio: 2.927499e-03	ci left: 4.808943e-01	ci right 4.823047e-01	k: 929487	n:1930000
KS ci ratio: 1.385642e-01	ci left: 3.857834e-04	ci right 4.437121e-04	k: 799	n:1930000
NEU2   1930000 perm   1576 sec   (1225 perm/sec)   p_kst 4.139896e-04   p_cons 4.815995e-01   p_joint 1.746114e-04

Joint ci ratio: 2.119506e-01	ci left: 1.576113e-04	ci right 1.954536e-04	k: 341	n:1940000
Cons ci ratio: 2.919803e-03	ci left: 4.809204e-01	ci right 4.823271e-01	k: 934350	n:1940000
KS ci ratio: 1.378764e-01	ci left: 3.877760e-04	ci right 4.456911e-04	k: 807	n:1940000
NEU2   1940000 perm   1591 sec   (1220 perm/sec)   p_kst 4.159794e-04   p_cons 4.816237e-01   p_joint 1.757732e-04

Joint ci ratio: 2.113335e-01	ci left: 1.577743e-04	ci right 1.955312e-04	k: 343	n:1950000
Cons ci ratio: 2.912083e-03	ci left: 4.809605e-01	ci right 4.823636e-01	k: 939241	n:1950000
KS ci ratio: 1.375364e-01	ci left: 3.877680e-04	ci right 4.455275e-04	k: 811	n:1950000
NEU2   1950000 perm   1605 sec   (1215 perm/sec)   p_kst 4.158974e-04   p_cons 4.816621e-01   p_joint 1.758974e-04

Joint ci ratio: 2.110271e-01	ci left: 1.574526e-04	ci right 1.950708e-04	k: 344	n:1960000
Cons ci ratio: 2.904649e-03	ci left: 4.809615e-01	ci right 4.823610e-01	k: 944056	n:1960000
KS ci ratio: 1.373674e-01	ci left: 3.867749e-04	ci right 4.443098e-04	k: 813	n:1960000
NEU2   1960000 perm   1620 sec   (1210 perm/sec)   p_kst 4.147959e-04   p_cons 4.816612e-01   p_joint 1.755102e-04

Joint ci ratio: 2.104180e-01	ci left: 1.576150e-04	ci right 1.951493e-04	k: 346	n:1970000
Cons ci ratio: 2.897187e-03	ci left: 4.809772e-01	ci right 4.823731e-01	k: 948900	n:1970000
KS ci ratio: 1.370311e-01	ci left: 3.867723e-04	ci right 4.441546e-04	k: 817	n:1970000
NEU2   1970000 perm   1635 sec   (1205 perm/sec)   p_kst 4.147208e-04   p_cons 4.816751e-01   p_joint 1.756345e-04

Joint ci ratio: 2.101155e-01	ci left: 1.572974e-04	ci right 1.946953e-04	k: 347	n:1980000
Cons ci ratio: 2.889744e-03	ci left: 4.809993e-01	ci right 4.823917e-01	k: 953757	n:1980000
KS ci ratio: 1.365312e-01	ci left: 3.877455e-04	ci right 4.450453e-04	k: 823	n:1980000
NEU2   1980000 perm   1650 sec   (1200 perm/sec)   p_kst 4.156566e-04   p_cons 4.816955e-01   p_joint 1.752525e-04

Joint ci ratio: 2.092156e-01	ci left: 1.579353e-04	ci right 1.953035e-04	k: 350	n:1990000
Cons ci ratio: 2.882607e-03	ci left: 4.809779e-01	ci right 4.823669e-01	k: 958528	n:1990000
KS ci ratio: 1.358731e-01	ci left: 3.896802e-04	ci right 4.469659e-04	k: 831	n:1990000
NEU2   1990000 perm   1665 sec   (1195 perm/sec)   p_kst 4.175879e-04   p_cons 4.816724e-01   p_joint 1.758794e-04

Joint ci ratio: 2.083272e-01	ci left: 1.585672e-04	ci right 1.959053e-04	k: 353	n:2000000
Cons ci ratio: 2.875541e-03	ci left: 4.809538e-01	ci right 4.823393e-01	k: 963293	n:2000000
KS ci ratio: 1.353857e-01	ci left: 3.906300e-04	ci right 4.478327e-04	k: 837	n:2000000
NEU2   2000000 perm   1680 sec   (1191 perm/sec)   p_kst 4.185000e-04   p_cons 4.816465e-01   p_joint 1.765000e-04

Joint ci ratio: 2.074499e-01	ci left: 1.591932e-04	ci right 1.965007e-04	k: 356	n:2010000
Cons ci ratio: 2.868200e-03	ci left: 4.809866e-01	ci right 4.823686e-01	k: 968172	n:2010000
KS ci ratio: 1.349836e-01	ci left: 3.910900e-04	ci right 4.481763e-04	k: 842	n:2010000
NEU2   2010000 perm   1695 sec   (1186 perm/sec)   p_kst 4.189055e-04   p_cons 4.816776e-01   p_joint 1.771144e-04

Joint ci ratio: 2.071600e-01	ci left: 1.588745e-04	ci right 1.960487e-04	k: 357	n:2020000
Cons ci ratio: 2.861312e-03	ci left: 4.809498e-01	ci right 4.823284e-01	k: 972911	n:2020000
KS ci ratio: 1.345851e-01	ci left: 3.915458e-04	ci right 4.485163e-04	k: 847	n:2020000
NEU2   2020000 perm   1710 sec   (1181 perm/sec)   p_kst 4.193069e-04   p_cons 4.816391e-01   p_joint 1.767327e-04

Joint ci ratio: 2.060122e-01	ci left: 1.599604e-04	ci right 1.971551e-04	k: 361	n:2030000
Cons ci ratio: 2.854229e-03	ci left: 4.809563e-01	ci right 4.823315e-01	k: 977737	n:2030000
KS ci ratio: 1.339546e-01	ci left: 3.934255e-04	ci right 4.503800e-04	k: 855	n:2030000
NEU2   2030000 perm   1725 sec   (1177 perm/sec)   p_kst 4.211823e-04   p_cons 4.816438e-01   p_joint 1.778325e-04

Joint ci ratio: 2.054454e-01	ci left: 1.601061e-04	ci right 1.972195e-04	k: 363	n:2040000
Cons ci ratio: 2.847207e-03	ci left: 4.809612e-01	ci right 4.823330e-01	k: 982560	n:2040000
KS ci ratio: 1.336427e-01	ci left: 3.933921e-04	ci right 4.501987e-04	k: 859	n:2040000
NEU2   2040000 perm   1740 sec   (1172 perm/sec)   p_kst 4.210784e-04   p_cons 4.816471e-01   p_joint 1.779412e-04

Joint ci ratio: 2.046040e-01	ci left: 1.607134e-04	ci right 1.977959e-04	k: 366	n:2050000
Cons ci ratio: 2.840152e-03	ci left: 4.809807e-01	ci right 4.823491e-01	k: 987413	n:2050000
KS ci ratio: 1.331789e-01	ci left: 3.943023e-04	ci right 4.510270e-04	k: 865	n:2050000
NEU2   2050000 perm   1756 sec   (1168 perm/sec)   p_kst 4.219512e-04   p_cons 4.816649e-01   p_joint 1.785366e-04

Joint ci ratio: 2.034979e-01	ci left: 1.617758e-04	ci right 1.988765e-04	k: 370	n:2060000
Cons ci ratio: 2.833439e-03	ci left: 4.809490e-01	ci right 4.823141e-01	k: 992161	n:2060000
KS ci ratio: 1.326438e-01	ci left: 3.956733e-04	ci right 4.523485e-04	k: 872	n:2060000
NEU2   2060000 perm   1771 sec   (1163 perm/sec)   p_kst 4.233010e-04   p_cons 4.816316e-01   p_joint 1.796117e-04

Joint ci ratio: 2.029516e-01	ci left: 1.619113e-04	ci right 1.989311e-04	k: 372	n:2070000
Cons ci ratio: 2.826602e-03	ci left: 4.809481e-01	ci right 4.823099e-01	k: 996972	n:2070000
KS ci ratio: 1.323409e-01	ci left: 3.956301e-04	ci right 4.521596e-04	k: 876	n:2070000
NEU2   2070000 perm   1787 sec   (1159 perm/sec)   p_kst 4.231884e-04   p_cons 4.816290e-01   p_joint 1.797101e-04

Joint ci ratio: 2.024096e-01	ci left: 1.620456e-04	ci right 1.989849e-04	k: 374	n:2080000
Cons ci ratio: 2.819908e-03	ci left: 4.809304e-01	ci right 4.822889e-01	k: 1001748	n:2080000
KS ci ratio: 1.320402e-01	ci left: 3.955875e-04	ci right 4.519724e-04	k: 880	n:2080000
NEU2   2080000 perm   1802 sec   (1154 perm/sec)   p_kst 4.230769e-04   p_cons 4.816096e-01   p_joint 1.798077e-04

Joint ci ratio: 2.018720e-01	ci left: 1.621788e-04	ci right 1.990382e-04	k: 376	n:2090000
Cons ci ratio: 2.813211e-03	ci left: 4.809219e-01	ci right 4.822772e-01	k: 1006543	n:2090000
KS ci ratio: 1.318906e-01	ci left: 3.946201e-04	ci right 4.507984e-04	k: 882	n:2090000
NEU2   2090000 perm   1818 sec   (1150 perm/sec)   p_kst 4.220096e-04   p_cons 4.815995e-01   p_joint 1.799043e-04

Joint ci ratio: 2.008094e-01	ci left: 1.632152e-04	ci right 2.000910e-04	k: 380	n:2100000
Cons ci ratio: 2.806494e-03	ci left: 4.809254e-01	ci right 4.822775e-01	k: 1011363	n:2100000
KS ci ratio: 1.313708e-01	ci left: 3.959645e-04	ci right 4.520948e-04	k: 889	n:2100000
NEU2   2100000 perm   1834 sec   (1145 perm/sec)   p_kst 4.233333e-04   p_cons 4.816014e-01   p_joint 1.809524e-04

Joint ci ratio: 2.005464e-01	ci left: 1.628918e-04	ci right 1.996404e-04	k: 381	n:2110000
Cons ci ratio: 2.799814e-03	ci left: 4.809308e-01	ci right 4.822797e-01	k: 1016187	n:2110000
KS ci ratio: 1.310033e-01	ci left: 3.963798e-04	ci right 4.523995e-04	k: 894	n:2110000
NEU2   2110000 perm   1850 sec   (1141 perm/sec)   p_kst 4.236967e-04   p_cons 4.816052e-01   p_joint 1.805687e-04

Joint ci ratio: 2.000235e-01	ci left: 1.630196e-04	ci right 1.996894e-04	k: 383	n:2120000
Cons ci ratio: 2.793248e-03	ci left: 4.809244e-01	ci right 4.822700e-01	k: 1020986	n:2120000
KS ci ratio: 1.306389e-01	ci left: 3.967914e-04	ci right 4.527012e-04	k: 899	n:2120000
NEU2   2120000 perm   1866 sec   (1136 perm/sec)   p_kst 4.240566e-04   p_cons 4.815972e-01   p_joint 1.806604e-04

Joint ci ratio: 1.997636e-01	ci left: 1.627002e-04	ci right 1.992448e-04	k: 384	n:2130000
Cons ci ratio: 2.786762e-03	ci left: 4.809119e-01	ci right 4.822544e-01	k: 1025772	n:2130000
KS ci ratio: 1.302055e-01	ci left: 3.976536e-04	ci right 4.534846e-04	k: 905	n:2130000
NEU2   2130000 perm   1882 sec   (1132 perm/sec)   p_kst 4.248826e-04   p_cons 4.815831e-01   p_joint 1.802817e-04

Joint ci ratio: 1.984788e-01	ci left: 1.641599e-04	ci right 2.007665e-04	k: 389	n:2140000
Cons ci ratio: 2.780264e-03	ci left: 4.809098e-01	ci right 4.822491e-01	k: 1030580	n:2140000
KS ci ratio: 1.296344e-01	ci left: 3.994122e-04	ci right 4.552252e-04	k: 913	n:2140000
NEU2   2140000 perm   1898 sec   (1127 perm/sec)   p_kst 4.266355e-04   p_cons 4.815794e-01   p_joint 1.817757e-04

Joint ci ratio: 1.982248e-01	ci left: 1.638384e-04	ci right 2.003209e-04	k: 390	n:2150000
Cons ci ratio: 2.773919e-03	ci left: 4.808882e-01	ci right 4.822244e-01	k: 1035346	n:2150000
KS ci ratio: 1.294222e-01	ci left: 3.989046e-04	ci right 4.545484e-04	k: 916	n:2150000
NEU2   2150000 perm   1915 sec   (1123 perm/sec)   p_kst 4.260465e-04   p_cons 4.815563e-01   p_joint 1.813953e-04

Joint ci ratio: 1.977198e-01	ci left: 1.639599e-04	ci right 2.003653e-04	k: 392	n:2160000
Cons ci ratio: 2.767579e-03	ci left: 4.808737e-01	ci right 4.822069e-01	k: 1040127	n:2160000
KS ci ratio: 1.291408e-01	ci left: 3.988498e-04	ci right 4.543557e-04	k: 920	n:2160000
NEU2   2160000 perm   1931 sec   (1119 perm/sec)   p_kst 4.259259e-04   p_cons 4.815403e-01   p_joint 1.814815e-04

Joint ci ratio: 1.972186e-01	ci left: 1.640804e-04	ci right 2.004091e-04	k: 394	n:2170000
Cons ci ratio: 2.761245e-03	ci left: 4.808663e-01	ci right 4.821964e-01	k: 1044923	n:2170000
KS ci ratio: 1.289310e-01	ci left: 3.983496e-04	ci right 4.536890e-04	k: 923	n:2170000
NEU2   2170000 perm   1947 sec   (1115 perm/sec)   p_kst 4.253456e-04   p_cons 4.815313e-01   p_joint 1.815668e-04

Joint ci ratio: 1.969695e-01	ci left: 1.637638e-04	ci right 1.999711e-04	k: 395	n:2180000
Cons ci ratio: 2.754978e-03	ci left: 4.808544e-01	ci right 4.821814e-01	k: 1049709	n:2180000
KS ci ratio: 1.286529e-01	ci left: 3.982981e-04	ci right 4.535018e-04	k: 927	n:2180000
NEU2   2180000 perm   1963 sec   (1110 perm/sec)   p_kst 4.252294e-04   p_cons 4.815179e-01   p_joint 1.811927e-04

Joint ci ratio: 1.964739e-01	ci left: 1.638843e-04	ci right 2.000162e-04	k: 397	n:2190000
Cons ci ratio: 2.748624e-03	ci left: 4.808663e-01	ci right 4.821903e-01	k: 1054547	n:2190000
KS ci ratio: 1.282389e-01	ci left: 3.991311e-04	ci right 4.542588e-04	k: 933	n:2190000
NEU2   2190000 perm   1980 sec   (1106 perm/sec)   p_kst 4.260274e-04   p_cons 4.815283e-01   p_joint 1.812785e-04

Joint ci ratio: 1.962276e-01	ci left: 1.635716e-04	ci right 1.995839e-04	k: 398	n:2200000
Cons ci ratio: 2.742528e-03	ci left: 4.808391e-01	ci right 4.821600e-01	k: 1059299	n:2200000
KS ci ratio: 1.280335e-01	ci left: 3.986368e-04	ci right 4.536013e-04	k: 936	n:2200000
NEU2   2200000 perm   1996 sec   (1102 perm/sec)   p_kst 4.254545e-04   p_cons 4.814995e-01   p_joint 1.809091e-04

Joint ci ratio: 1.962277e-01	ci left: 1.628314e-04	ci right 1.986808e-04	k: 398	n:2210000
Cons ci ratio: 2.736165e-03	ci left: 4.808682e-01	ci right 4.821862e-01	k: 1064175	n:2210000
KS ci ratio: 1.278972e-01	ci left: 3.977090e-04	ci right 4.524827e-04	k: 938	n:2210000
NEU2   2210000 perm   2012 sec   (1098 perm/sec)   p_kst 4.244344e-04   p_cons 4.815271e-01   p_joint 1.800905e-04

Joint ci ratio: 1.959823e-01	ci left: 1.625263e-04	ci right 1.982584e-04	k: 399	n:2220000
Cons ci ratio: 2.729902e-03	ci left: 4.808867e-01	ci right 4.822017e-01	k: 1069028	n:2220000
KS ci ratio: 1.277612e-01	ci left: 3.967896e-04	ci right 4.513742e-04	k: 940	n:2220000
NEU2   2220000 perm   2029 sec   (1094 perm/sec)   p_kst 4.234234e-04   p_cons 4.815441e-01   p_joint 1.797297e-04

Joint ci ratio: 1.954942e-01	ci left: 1.626504e-04	ci right 1.983101e-04	k: 401	n:2230000
Cons ci ratio: 2.723648e-03	ci left: 4.809113e-01	ci right 4.822233e-01	k: 1073895	n:2230000
KS ci ratio: 1.274231e-01	ci left: 3.971808e-04	ci right 4.516638e-04	k: 945	n:2230000
NEU2   2230000 perm   2046 sec   (1090 perm/sec)   p_kst 4.237668e-04   p_cons 4.815673e-01   p_joint 1.798206e-04

Joint ci ratio: 1.950097e-01	ci left: 1.627735e-04	ci right 1.983612e-04	k: 403	n:2240000
Cons ci ratio: 2.717241e-03	ci left: 4.809718e-01	ci right 4.822809e-01	k: 1078843	n:2240000
KS ci ratio: 1.270877e-01	ci left: 3.975688e-04	ci right 4.519506e-04	k: 950	n:2240000
NEU2   2240000 perm   2063 sec   (1086 perm/sec)   p_kst 4.241071e-04   p_cons 4.816263e-01   p_joint 1.799107e-04

Joint ci ratio: 1.947688e-01	ci left: 1.624728e-04	ci right 1.979457e-04	k: 404	n:2250000
Cons ci ratio: 2.711015e-03	ci left: 4.810065e-01	ci right 4.823127e-01	k: 1083734	n:2250000
KS ci ratio: 1.269543e-01	ci left: 3.966625e-04	ci right 4.508591e-04	k: 952	n:2250000
NEU2   2250000 perm   2080 sec   (1082 perm/sec)   p_kst 4.231111e-04   p_cons 4.816596e-01   p_joint 1.795556e-04

Joint ci ratio: 1.945288e-01	ci left: 1.621748e-04	ci right 1.975339e-04	k: 405	n:2260000
Cons ci ratio: 2.704751e-03	ci left: 4.810559e-01	ci right 4.823592e-01	k: 1088659	n:2260000
KS ci ratio: 1.267550e-01	ci left: 3.961926e-04	ci right 4.502337e-04	k: 955	n:2260000
NEU2   2260000 perm   2096 sec   (1078 perm/sec)   p_kst 4.225664e-04   p_cons 4.817075e-01   p_joint 1.792035e-04

Joint ci ratio: 1.945289e-01	ci left: 1.614604e-04	ci right 1.966637e-04	k: 405	n:2270000
Cons ci ratio: 2.698725e-03	ci left: 4.810687e-01	ci right 4.823692e-01	k: 1093502	n:2270000
KS ci ratio: 1.264907e-01	ci left: 3.961536e-04	ci right 4.500681e-04	k: 959	n:2270000
NEU2   2270000 perm   2113 sec   (1074 perm/sec)   p_kst 4.224670e-04   p_cons 4.817189e-01   p_joint 1.784141e-04

Joint ci ratio: 1.942898e-01	ci left: 1.611695e-04	ci right 1.962610e-04	k: 406	n:2280000
Cons ci ratio: 2.692962e-03	ci left: 4.810403e-01	ci right 4.823379e-01	k: 1098251	n:2280000
KS ci ratio: 1.260972e-01	ci left: 3.969645e-04	ci right 4.508088e-04	k: 965	n:2280000
NEU2   2280000 perm   2131 sec   (1070 perm/sec)   p_kst 4.232456e-04   p_cons 4.816890e-01   p_joint 1.780702e-04

Joint ci ratio: 1.940516e-01	ci left: 1.608811e-04	ci right 1.958619e-04	k: 407	n:2290000
Cons ci ratio: 2.687120e-03	ci left: 4.810334e-01	ci right 4.823282e-01	k: 1103049	n:2290000
KS ci ratio: 1.259669e-01	ci left: 3.960769e-04	ci right 4.497411e-04	k: 967	n:2290000
NEU2   2290000 perm   2148 sec   (1066 perm/sec)   p_kst 4.222707e-04   p_cons 4.816808e-01   p_joint 1.777293e-04

Joint ci ratio: 1.935777e-01	ci left: 1.610090e-04	ci right 1.959220e-04	k: 409	n:2300000
Cons ci ratio: 2.681292e-03	ci left: 4.810310e-01	ci right 4.823229e-01	k: 1107857	n:2300000
KS ci ratio: 1.256428e-01	ci left: 3.964603e-04	ci right 4.500280e-04	k: 972	n:2300000
NEU2   2300000 perm   2165 sec   (1062 perm/sec)   p_kst 4.226087e-04   p_cons 4.816770e-01   p_joint 1.778261e-04

Joint ci ratio: 1.935778e-01	ci left: 1.603120e-04	ci right 1.950739e-04	k: 409	n:2310000
Cons ci ratio: 2.675433e-03	ci left: 4.810416e-01	ci right 4.823307e-01	k: 1112695	n:2310000
KS ci ratio: 1.251294e-01	ci left: 3.980986e-04	ci right 4.516516e-04	k: 980	n:2310000
NEU2   2310000 perm   2182 sec   (1059 perm/sec)   p_kst 4.242424e-04   p_cons 4.816861e-01   p_joint 1.770563e-04

Joint ci ratio: 1.924080e-01	ci left: 1.616720e-04	ci right 1.964922e-04	k: 414	n:2320000
Cons ci ratio: 2.669748e-03	ci left: 4.810267e-01	ci right 4.823130e-01	k: 1117474	n:2320000
KS ci ratio: 1.246222e-01	ci left: 3.997233e-04	ci right 4.532607e-04	k: 988	n:2320000
NEU2   2320000 perm   2199 sec   (1055 perm/sec)   p_kst 4.258621e-04   p_cons 4.816698e-01   p_joint 1.784483e-04

Joint ci ratio: 1.919460e-01	ci left: 1.617952e-04	ci right 1.965485e-04	k: 416	n:2330000
Cons ci ratio: 2.663902e-03	ci left: 4.810488e-01	ci right 4.823324e-01	k: 1122339	n:2330000
KS ci ratio: 1.244336e-01	ci left: 3.992552e-04	ci right 4.526430e-04	k: 991	n:2330000
NEU2   2330000 perm   2217 sec   (1051 perm/sec)   p_kst 4.253219e-04   p_cons 4.816906e-01   p_joint 1.785408e-04

Joint ci ratio: 1.919461e-01	ci left: 1.611038e-04	ci right 1.957086e-04	k: 416	n:2340000
Cons ci ratio: 2.658143e-03	ci left: 4.810617e-01	ci right 4.823426e-01	k: 1127183	n:2340000
KS ci ratio: 1.242459e-01	ci left: 3.987911e-04	ci right 4.520306e-04	k: 994	n:2340000
NEU2   2340000 perm   2234 sec   (1047 perm/sec)   p_kst 4.247863e-04   p_cons 4.817021e-01   p_joint 1.777778e-04

Joint ci ratio: 1.914874e-01	ci left: 1.612285e-04	ci right 1.957676e-04	k: 418	n:2350000
Cons ci ratio: 2.652612e-03	ci left: 4.810384e-01	ci right 4.823165e-01	k: 1131942	n:2350000
KS ci ratio: 1.240591e-01	ci left: 3.983311e-04	ci right 4.514233e-04	k: 997	n:2350000
NEU2   2350000 perm   2252 sec   (1044 perm/sec)   p_kst 4.242553e-04   p_cons 4.816774e-01   p_joint 1.778723e-04

Joint ci ratio: 1.910320e-01	ci left: 1.613522e-04	ci right 1.958261e-04	k: 420	n:2360000
Cons ci ratio: 2.647042e-03	ci left: 4.810293e-01	ci right 4.823047e-01	k: 1136734	n:2360000
KS ci ratio: 1.236878e-01	ci left: 3.991068e-04	ci right 4.521316e-04	k: 1003	n:2360000
NEU2   2360000 perm   2269 sec   (1040 perm/sec)   p_kst 4.250000e-04   p_cons 4.816669e-01   p_joint 1.779661e-04

Joint ci ratio: 1.908056e-01	ci left: 1.610731e-04	ci right 1.954419e-04	k: 421	n:2370000
Cons ci ratio: 2.641382e-03	ci left: 4.810438e-01	ci right 4.823165e-01	k: 1141582	n:2370000
KS ci ratio: 1.234421e-01	ci left: 3.990584e-04	ci right 4.519638e-04	k: 1007	n:2370000
NEU2   2370000 perm   2287 sec   (1036 perm/sec)   p_kst 4.248945e-04   p_cons 4.816802e-01   p_joint 1.776371e-04

Joint ci ratio: 1.905799e-01	ci left: 1.607965e-04	ci right 1.950609e-04	k: 422	n:2380000
Cons ci ratio: 2.635939e-03	ci left: 4.810238e-01	ci right 4.822939e-01	k: 1146348	n:2380000
KS ci ratio: 1.231979e-01	ci left: 3.990105e-04	ci right 4.517972e-04	k: 1011	n:2380000
NEU2   2380000 perm   2304 sec   (1033 perm/sec)   p_kst 4.247899e-04   p_cons 4.816588e-01   p_joint 1.773109e-04

Joint ci ratio: 1.901310e-01	ci left: 1.609206e-04	ci right 1.951214e-04	k: 424	n:2390000
Cons ci ratio: 2.630317e-03	ci left: 4.810446e-01	ci right 4.823119e-01	k: 1151211	n:2390000
KS ci ratio: 1.227740e-01	ci left: 4.001798e-04	ci right 4.529258e-04	k: 1018	n:2390000
NEU2   2390000 perm   2322 sec   (1029 perm/sec)   p_kst 4.259414e-04   p_cons 4.816782e-01   p_joint 1.774059e-04

Joint ci ratio: 1.899077e-01	ci left: 1.606470e-04	ci right 1.947449e-04	k: 425	n:2400000
Cons ci ratio: 2.624787e-03	ci left: 4.810543e-01	ci right 4.823190e-01	k: 1156048	n:2400000
KS ci ratio: 1.226537e-01	ci left: 3.993201e-04	ci right 4.518975e-04	k: 1020	n:2400000
NEU2   2400000 perm   2340 sec   (1026 perm/sec)   p_kst 4.250000e-04   p_cons 4.816867e-01   p_joint 1.770833e-04

Joint ci ratio: 1.896853e-01	ci left: 1.603756e-04	ci right 1.943715e-04	k: 426	n:2410000
Cons ci ratio: 2.619414e-03	ci left: 4.810408e-01	ci right 4.823029e-01	k: 1160829	n:2410000
KS ci ratio: 1.224739e-01	ci left: 3.988699e-04	ci right 4.513054e-04	k: 1023	n:2410000
NEU2   2410000 perm   2357 sec   (1022 perm/sec)   p_kst 4.244813e-04   p_cons 4.816718e-01   p_joint 1.767635e-04

Joint ci ratio: 1.890224e-01	ci left: 1.608938e-04	ci right 1.948666e-04	k: 429	n:2420000
Cons ci ratio: 2.613959e-03	ci left: 4.810492e-01	ci right 4.823087e-01	k: 1165663	n:2420000
KS ci ratio: 1.221760e-01	ci left: 3.992245e-04	ci right 4.515698e-04	k: 1028	n:2420000
NEU2   2420000 perm   2375 sec   (1019 perm/sec)   p_kst 4.247934e-04   p_cons 4.816789e-01   p_joint 1.772727e-04

Joint ci ratio: 1.885843e-01	ci left: 1.610158e-04	ci right 1.949266e-04	k: 431	n:2430000
Cons ci ratio: 2.608690e-03	ci left: 4.810284e-01	ci right 4.822853e-01	k: 1170426	n:2430000
KS ci ratio: 1.219392e-01	ci left: 3.991775e-04	ci right 4.514078e-04	k: 1032	n:2430000
NEU2   2430000 perm   2393 sec   (1015 perm/sec)   p_kst 4.246914e-04   p_cons 4.816568e-01   p_joint 1.773663e-04

Joint ci ratio: 1.883664e-01	ci left: 1.607464e-04	ci right 1.945569e-04	k: 432	n:2440000
Cons ci ratio: 2.603494e-03	ci left: 4.809999e-01	ci right 4.822542e-01	k: 1175170	n:2440000
KS ci ratio: 1.217038e-01	ci left: 3.991309e-04	ci right 4.512470e-04	k: 1036	n:2440000
NEU2   2440000 perm   2412 sec   (1012 perm/sec)   p_kst 4.245902e-04   p_cons 4.816270e-01   p_joint 1.770492e-04

Joint ci ratio: 1.881493e-01	ci left: 1.604793e-04	ci right 1.941902e-04	k: 433	n:2450000
Cons ci ratio: 2.598153e-03	ci left: 4.810056e-01	ci right 4.822573e-01	k: 1179997	n:2450000
KS ci ratio: 1.214115e-01	ci left: 3.994805e-04	ci right 4.515081e-04	k: 1041	n:2450000
NEU2   2450000 perm   2430 sec   (1008 perm/sec)   p_kst 4.248980e-04   p_cons 4.816314e-01   p_joint 1.767347e-04

Joint ci ratio: 1.872881e-01	ci left: 1.613765e-04	ci right 1.951031e-04	k: 437	n:2460000
Cons ci ratio: 2.592825e-03	ci left: 4.810149e-01	ci right 4.822640e-01	k: 1184833	n:2460000
KS ci ratio: 1.210056e-01	ci left: 4.006159e-04	ci right 4.526044e-04	k: 1048	n:2460000
NEU2   2460000 perm   2448 sec   (1005 perm/sec)   p_kst 4.260163e-04   p_cons 4.816394e-01   p_joint 1.776423e-04

Joint ci ratio: 1.870747e-01	ci left: 1.611090e-04	ci right 1.947370e-04	k: 438	n:2470000
Cons ci ratio: 2.587664e-03	ci left: 4.809982e-01	ci right 4.822448e-01	k: 1189605	n:2470000
KS ci ratio: 1.207183e-01	ci left: 4.009571e-04	ci right 4.528574e-04	k: 1053	n:2470000
NEU2   2470000 perm   2467 sec   (1001 perm/sec)   p_kst 4.263158e-04   p_cons 4.816215e-01   p_joint 1.773279e-04

Joint ci ratio: 1.868621e-01	ci left: 1.608438e-04	ci right 1.943739e-04	k: 439	n:2480000
Cons ci ratio: 2.582353e-03	ci left: 4.810167e-01	ci right 4.822608e-01	k: 1194464	n:2480000
KS ci ratio: 1.204899e-01	ci left: 4.009046e-04	ci right 4.526929e-04	k: 1057	n:2480000
NEU2   2480000 perm   2485 sec   (998 perm/sec)   p_kst 4.262097e-04   p_cons 4.816387e-01   p_joint 1.770161e-04

Joint ci ratio: 1.862282e-01	ci left: 1.613464e-04	ci right 1.948543e-04	k: 442	n:2490000
Cons ci ratio: 2.577165e-03	ci left: 4.810174e-01	ci right 4.822590e-01	k: 1199279	n:2490000
KS ci ratio: 1.202061e-01	ci left: 4.012421e-04	ci right 4.529434e-04	k: 1062	n:2490000
NEU2   2490000 perm   2504 sec   (994 perm/sec)   p_kst 4.265060e-04   p_cons 4.816382e-01   p_joint 1.775100e-04

Joint ci ratio: 1.862283e-01	ci left: 1.607010e-04	ci right 1.940748e-04	k: 442	n:2500000
Cons ci ratio: 2.572076e-03	ci left: 4.810048e-01	ci right 4.822440e-01	k: 1204061	n:2500000
KS ci ratio: 1.200933e-01	ci left: 4.004131e-04	ci right 4.519556e-04	k: 1064	n:2500000
NEU2   2500000 perm   2522 sec   (991 perm/sec)   p_kst 4.256000e-04   p_cons 4.816244e-01   p_joint 1.768000e-04

Joint ci ratio: 1.862283e-01	ci left: 1.600607e-04	ci right 1.933016e-04	k: 442	n:2510000
Cons ci ratio: 2.566727e-03	ci left: 4.810490e-01	ci right 4.822857e-01	k: 1208985	n:2510000
KS ci ratio: 1.198684e-01	ci left: 4.003636e-04	ci right 4.517964e-04	k: 1068	n:2510000
NEU2   2510000 perm   2541 sec   (988 perm/sec)   p_kst 4.254980e-04   p_cons 4.816673e-01   p_joint 1.760956e-04

Joint ci ratio: 1.856009e-01	ci left: 1.605606e-04	ci right 1.937804e-04	k: 445	n:2520000
Cons ci ratio: 2.561526e-03	ci left: 4.810702e-01	ci right 4.823044e-01	k: 1213852	n:2520000
KS ci ratio: 1.195890e-01	ci left: 4.006996e-04	ci right 4.520471e-04	k: 1073	n:2520000
NEU2   2520000 perm   2560 sec   (985 perm/sec)   p_kst 4.257937e-04   p_cons 4.816873e-01   p_joint 1.765873e-04

Joint ci ratio: 1.853932e-01	ci left: 1.603029e-04	ci right 1.934281e-04	k: 446	n:2530000
Cons ci ratio: 2.556331e-03	ci left: 4.810964e-01	ci right 4.823282e-01	k: 1218732	n:2530000
KS ci ratio: 1.194224e-01	ci left: 4.002661e-04	ci right 4.514816e-04	k: 1076	n:2530000
NEU2   2530000 perm   2578 sec   (981 perm/sec)   p_kst 4.252964e-04   p_cons 4.817123e-01   p_joint 1.762846e-04

Joint ci ratio: 1.849798e-01	ci left: 1.604227e-04	ci right 1.934904e-04	k: 448	n:2540000
Cons ci ratio: 2.551393e-03	ci left: 4.810783e-01	ci right 4.823076e-01	k: 1223500	n:2540000
KS ci ratio: 1.191461e-01	ci left: 4.006000e-04	ci right 4.517313e-04	k: 1081	n:2540000
NEU2   2540000 perm   2597 sec   (978 perm/sec)   p_kst 4.255906e-04   p_cons 4.816929e-01   p_joint 1.763780e-04

Joint ci ratio: 1.847742e-01	ci left: 1.601676e-04	ci right 1.931419e-04	k: 449	n:2550000
Cons ci ratio: 2.546351e-03	ci left: 4.810862e-01	ci right 4.823131e-01	k: 1228334	n:2550000
KS ci ratio: 1.190362e-01	ci left: 3.997900e-04	ci right 4.507675e-04	k: 1083	n:2550000
NEU2   2550000 perm   2616 sec   (975 perm/sec)   p_kst 4.247059e-04   p_cons 4.816996e-01   p_joint 1.760784e-04

Joint ci ratio: 1.843650e-01	ci left: 1.602871e-04	ci right 1.932047e-04	k: 451	n:2560000
Cons ci ratio: 2.541465e-03	ci left: 4.810694e-01	ci right 4.822939e-01	k: 1233105	n:2560000
KS ci ratio: 1.188172e-01	ci left: 3.997443e-04	ci right 4.506156e-04	k: 1087	n:2560000
NEU2   2560000 perm   2635 sec   (972 perm/sec)   p_kst 4.246094e-04   p_cons 4.816816e-01   p_joint 1.761719e-04

Joint ci ratio: 1.839584e-01	ci left: 1.604058e-04	ci right 1.932670e-04	k: 453	n:2570000
Cons ci ratio: 2.536468e-03	ci left: 4.810800e-01	ci right 4.823022e-01	k: 1237946	n:2570000
KS ci ratio: 1.185451e-01	ci left: 4.000767e-04	ci right 4.508655e-04	k: 1092	n:2570000
NEU2   2570000 perm   2654 sec   (968 perm/sec)   p_kst 4.249027e-04   p_cons 4.816911e-01   p_joint 1.762646e-04

Joint ci ratio: 1.835546e-01	ci left: 1.605236e-04	ci right 1.933287e-04	k: 455	n:2580000
Cons ci ratio: 2.531470e-03	ci left: 4.810963e-01	ci right 4.823161e-01	k: 1242802	n:2580000
KS ci ratio: 1.182210e-01	ci left: 4.007827e-04	ci right 4.515124e-04	k: 1098	n:2580000
NEU2   2580000 perm   2673 sec   (965 perm/sec)   p_kst 4.255814e-04   p_cons 4.817062e-01   p_joint 1.763566e-04

Joint ci ratio: 1.831533e-01	ci left: 1.606405e-04	ci right 1.933899e-04	k: 457	n:2590000
Cons ci ratio: 2.526376e-03	ci left: 4.811376e-01	ci right 4.823551e-01	k: 1247723	n:2590000
KS ci ratio: 1.179530e-01	ci left: 4.011088e-04	ci right 4.517566e-04	k: 1103	n:2590000
NEU2   2590000 perm   2692 sec   (962 perm/sec)   p_kst 4.258687e-04   p_cons 4.817463e-01   p_joint 1.764479e-04

Joint ci ratio: 1.829537e-01	ci left: 1.603897e-04	ci right 1.930483e-04	k: 458	n:2600000
Cons ci ratio: 2.521408e-03	ci left: 4.811594e-01	ci right 4.823745e-01	k: 1252594	n:2600000
KS ci ratio: 1.178997e-01	ci left: 3.999393e-04	ci right 4.504150e-04	k: 1104	n:2600000
NEU2   2600000 perm   2711 sec   (959 perm/sec)   p_kst 4.246154e-04   p_cons 4.817669e-01   p_joint 1.761538e-04

Joint ci ratio: 1.829538e-01	ci left: 1.597752e-04	ci right 1.923087e-04	k: 458	n:2610000
Cons ci ratio: 2.516536e-03	ci left: 4.811680e-01	ci right 4.823807e-01	k: 1257431	n:2610000
KS ci ratio: 1.176868e-01	ci left: 3.998944e-04	ci right 4.502670e-04	k: 1108	n:2610000
NEU2   2610000 perm   2730 sec   (956 perm/sec)   p_kst 4.245211e-04   p_cons 4.817743e-01   p_joint 1.754789e-04

Joint ci ratio: 1.827549e-01	ci left: 1.595295e-04	ci right 1.919738e-04	k: 459	n:2620000
Cons ci ratio: 2.511757e-03	ci left: 4.811635e-01	ci right 4.823739e-01	k: 1262234	n:2620000
KS ci ratio: 1.174224e-01	ci left: 4.002203e-04	ci right 4.505129e-04	k: 1113	n:2620000
NEU2   2620000 perm   2750 sec   (953 perm/sec)   p_kst 4.248092e-04   p_cons 4.817687e-01   p_joint 1.751908e-04

Joint ci ratio: 1.821618e-01	ci left: 1.600116e-04	ci right 1.924366e-04	k: 462	n:2630000
Cons ci ratio: 2.507029e-03	ci left: 4.811545e-01	ci right 4.823626e-01	k: 1267025	n:2630000
KS ci ratio: 1.171598e-01	ci left: 4.005440e-04	ci right 4.507568e-04	k: 1118	n:2630000
NEU2   2630000 perm   2769 sec   (950 perm/sec)   p_kst 4.250951e-04   p_cons 4.817586e-01   p_joint 1.756654e-04

Joint ci ratio: 1.815744e-01	ci left: 1.604901e-04	ci right 1.928957e-04	k: 465	n:2640000
Cons ci ratio: 2.502287e-03	ci left: 4.811535e-01	ci right 4.823594e-01	k: 1271837	n:2640000
KS ci ratio: 1.167950e-01	ci left: 4.016007e-04	ci right 4.517784e-04	k: 1125	n:2640000
NEU2   2640000 perm   2789 sec   (947 perm/sec)   p_kst 4.261364e-04   p_cons 4.817564e-01   p_joint 1.761364e-04

Joint ci ratio: 1.811860e-01	ci left: 1.606049e-04	ci right 1.929567e-04	k: 467	n:2650000
Cons ci ratio: 2.497660e-03	ci left: 4.811348e-01	ci right 4.823384e-01	k: 1276602	n:2650000
KS ci ratio: 1.166397e-01	ci left: 4.011842e-04	ci right 4.512387e-04	k: 1128	n:2650000
NEU2   2650000 perm   2808 sec   (944 perm/sec)   p_kst 4.256604e-04   p_cons 4.817366e-01   p_joint 1.762264e-04

Joint ci ratio: 1.809928e-01	ci left: 1.603600e-04	ci right 1.926243e-04	k: 468	n:2660000
Cons ci ratio: 2.492931e-03	ci left: 4.811418e-01	ci right 4.823432e-01	k: 1281435	n:2660000
KS ci ratio: 1.164337e-01	ci left: 4.011360e-04	ci right 4.510899e-04	k: 1132	n:2660000
NEU2   2660000 perm   2828 sec   (941 perm/sec)   p_kst 4.255639e-04   p_cons 4.817425e-01   p_joint 1.759398e-04

Joint ci ratio: 1.808002e-01	ci left: 1.601170e-04	ci right 1.922943e-04	k: 469	n:2670000
Cons ci ratio: 2.488220e-03	ci left: 4.811507e-01	ci right 4.823497e-01	k: 1286273	n:2670000
KS ci ratio: 1.163311e-01	ci left: 4.003608e-04	ci right 4.501713e-04	k: 1134	n:2670000
NEU2   2670000 perm   2848 sec   (938 perm/sec)   p_kst 4.247191e-04   p_cons 4.817502e-01   p_joint 1.756554e-04

Joint ci ratio: 1.806082e-01	ci left: 1.598758e-04	ci right 1.919668e-04	k: 470	n:2680000
Cons ci ratio: 2.483588e-03	ci left: 4.811490e-01	ci right 4.823458e-01	k: 1291083	n:2680000
KS ci ratio: 1.161777e-01	ci left: 3.999538e-04	ci right 4.496435e-04	k: 1137	n:2680000
NEU2   2680000 perm   2867 sec   (935 perm/sec)   p_kst 4.242537e-04   p_cons 4.817474e-01   p_joint 1.753731e-04

Joint ci ratio: 1.804168e-01	ci left: 1.596364e-04	ci right 1.916417e-04	k: 471	n:2690000
Cons ci ratio: 2.479128e-03	ci left: 4.811176e-01	ci right 4.823122e-01	k: 1295813	n:2690000
KS ci ratio: 1.160249e-01	ci left: 3.995498e-04	ci right 4.491196e-04	k: 1140	n:2690000
NEU2   2690000 perm   2887 sec   (932 perm/sec)   p_kst 4.237918e-04   p_cons 4.817149e-01   p_joint 1.750929e-04

Joint ci ratio: 1.792807e-01	ci left: 1.611674e-04	ci right 1.932540e-04	k: 477	n:2700000
Cons ci ratio: 2.474680e-03	ci left: 4.810890e-01	ci right 4.822814e-01	k: 1300550	n:2700000
KS ci ratio: 1.154694e-01	ci left: 4.020262e-04	ci right 4.516481e-04	k: 1151	n:2700000
NEU2   2700000 perm   2907 sec   (929 perm/sec)   p_kst 4.262963e-04   p_cons 4.816852e-01   p_joint 1.766667e-04

Joint ci ratio: 1.785352e-01	ci left: 1.619826e-04	ci right 1.940830e-04	k: 481	n:2710000
Cons ci ratio: 2.470174e-03	ci left: 4.810773e-01	ci right 4.822674e-01	k: 1305332	n:2710000
KS ci ratio: 1.151202e-01	ci left: 4.030512e-04	ci right 4.526390e-04	k: 1158	n:2710000
NEU2   2710000 perm   2927 sec   (926 perm/sec)   p_kst 4.273063e-04   p_cons 4.816723e-01   p_joint 1.774908e-04

Joint ci ratio: 1.783503e-01	ci left: 1.617383e-04	ci right 1.937535e-04	k: 482	n:2720000
Cons ci ratio: 2.465661e-03	ci left: 4.810718e-01	ci right 4.822598e-01	k: 1310131	n:2720000
KS ci ratio: 1.150210e-01	ci left: 4.022835e-04	ci right 4.517313e-04	k: 1160	n:2720000
NEU2   2720000 perm   2947 sec   (923 perm/sec)   p_kst 4.264706e-04   p_cons 4.816658e-01   p_joint 1.772059e-04

Joint ci ratio: 1.781660e-01	ci left: 1.614958e-04	ci right 1.934264e-04	k: 483	n:2730000
Cons ci ratio: 2.461074e-03	ci left: 4.810866e-01	ci right 4.822724e-01	k: 1314985	n:2730000
KS ci ratio: 1.148234e-01	ci left: 4.022331e-04	ci right 4.515840e-04	k: 1164	n:2730000
NEU2   2730000 perm   2967 sec   (920 perm/sec)   p_kst 4.263736e-04   p_cons 4.816795e-01   p_joint 1.769231e-04

Joint ci ratio: 1.779822e-01	ci left: 1.612551e-04	ci right 1.931017e-04	k: 484	n:2740000
Cons ci ratio: 2.456560e-03	ci left: 4.810914e-01	ci right 4.822750e-01	k: 1319812	n:2740000
KS ci ratio: 1.146268e-01	ci left: 4.021830e-04	ci right 4.514376e-04	k: 1168	n:2740000
NEU2   2740000 perm   2987 sec   (917 perm/sec)   p_kst 4.262774e-04   p_cons 4.816832e-01   p_joint 1.766423e-04

Joint ci ratio: 1.777991e-01	ci left: 1.610161e-04	ci right 1.927793e-04	k: 485	n:2750000
Cons ci ratio: 2.452050e-03	ci left: 4.811006e-01	ci right 4.822820e-01	k: 1324651	n:2750000
KS ci ratio: 1.144312e-01	ci left: 4.021334e-04	ci right 4.512922e-04	k: 1172	n:2750000
NEU2   2750000 perm   3007 sec   (914 perm/sec)   p_kst 4.261818e-04   p_cons 4.816913e-01   p_joint 1.763636e-04

Joint ci ratio: 1.776165e-01	ci left: 1.607790e-04	ci right 1.924592e-04	k: 486	n:2760000
Cons ci ratio: 2.447639e-03	ci left: 4.810944e-01	ci right 4.822737e-01	k: 1329448	n:2760000
KS ci ratio: 1.142366e-01	ci left: 4.020842e-04	ci right 4.511478e-04	k: 1176	n:2760000
NEU2   2760000 perm   3027 sec   (912 perm/sec)   p_kst 4.260870e-04   p_cons 4.816841e-01   p_joint 1.760870e-04

Joint ci ratio: 1.774344e-01	ci left: 1.605435e-04	ci right 1.921415e-04	k: 487	n:2770000
Cons ci ratio: 2.443243e-03	ci left: 4.810901e-01	ci right 4.822673e-01	k: 1334250	n:2770000
KS ci ratio: 1.140429e-01	ci left: 4.020355e-04	ci right 4.510043e-04	k: 1180	n:2770000
NEU2   2770000 perm   3048 sec   (909 perm/sec)   p_kst 4.259928e-04   p_cons 4.816787e-01   p_joint 1.758123e-04

Joint ci ratio: 1.770719e-01	ci left: 1.606535e-04	ci right 1.922016e-04	k: 489	n:2780000
Cons ci ratio: 2.438797e-03	ci left: 4.811010e-01	ci right 4.822760e-01	k: 1339094	n:2780000
KS ci ratio: 1.139466e-01	ci left: 4.012882e-04	ci right 4.501219e-04	k: 1182	n:2780000
NEU2   2780000 perm   3068 sec   (906 perm/sec)   p_kst 4.251799e-04   p_cons 4.816885e-01   p_joint 1.758993e-04

Joint ci ratio: 1.770720e-01	ci left: 1.600777e-04	ci right 1.915127e-04	k: 489	n:2790000
Cons ci ratio: 2.434215e-03	ci left: 4.811447e-01	ci right 4.823177e-01	k: 1344030	n:2790000
KS ci ratio: 1.139466e-01	ci left: 3.998499e-04	ci right 4.485086e-04	k: 1182	n:2790000
NEU2   2790000 perm   3089 sec   (903 perm/sec)   p_kst 4.236559e-04   p_cons 4.817312e-01   p_joint 1.752688e-04

Joint ci ratio: 1.768916e-01	ci left: 1.598473e-04	ci right 1.912017e-04	k: 490	n:2800000
Cons ci ratio: 2.429905e-03	ci left: 4.811374e-01	ci right 4.823083e-01	k: 1348824	n:2800000
KS ci ratio: 1.137066e-01	ci left: 4.001567e-04	ci right 4.487433e-04	k: 1187	n:2800000
NEU2   2800000 perm   3109 sec   (901 perm/sec)   p_kst 4.239286e-04   p_cons 4.817229e-01   p_joint 1.750000e-04

Joint ci ratio: 1.767117e-01	ci left: 1.596186e-04	ci right 1.908929e-04	k: 491	n:2810000
Cons ci ratio: 2.425645e-03	ci left: 4.811245e-01	ci right 4.822933e-01	k: 1353602	n:2810000
KS ci ratio: 1.134680e-01	ci left: 4.004615e-04	ci right 4.489763e-04	k: 1192	n:2810000
NEU2   2810000 perm   3130 sec   (898 perm/sec)   p_kst 4.241993e-04   p_cons 4.817089e-01   p_joint 1.747331e-04

Joint ci ratio: 1.763537e-01	ci left: 1.597304e-04	ci right 1.909565e-04	k: 493	n:2820000
Cons ci ratio: 2.421351e-03	ci left: 4.811234e-01	ci right 4.822901e-01	k: 1358413	n:2820000
KS ci ratio: 1.133257e-01	ci left: 4.000751e-04	ci right 4.484781e-04	k: 1195	n:2820000
NEU2   2820000 perm   3151 sec   (895 perm/sec)   p_kst 4.237589e-04   p_cons 4.817067e-01   p_joint 1.748227e-04

Joint ci ratio: 1.763537e-01	ci left: 1.591660e-04	ci right 1.902817e-04	k: 493	n:2830000
Cons ci ratio: 2.417132e-03	ci left: 4.811113e-01	ci right 4.822760e-01	k: 1363193	n:2830000
KS ci ratio: 1.132311e-01	ci left: 3.993481e-04	ci right 4.476202e-04	k: 1197	n:2830000
NEU2   2830000 perm   3172 sec   (892 perm/sec)   p_kst 4.229682e-04   p_cons 4.816936e-01   p_joint 1.742049e-04

Joint ci ratio: 1.758206e-01	ci left: 1.596153e-04	ci right 1.907146e-04	k: 496	n:2840000
Cons ci ratio: 2.412904e-03	ci left: 4.811060e-01	ci right 4.822686e-01	k: 1367992	n:2840000
KS ci ratio: 1.130896e-01	ci left: 3.989683e-04	ci right 4.471303e-04	k: 1200	n:2840000
NEU2   2840000 perm   3193 sec   (890 perm/sec)   p_kst 4.225352e-04   p_cons 4.816873e-01   p_joint 1.746479e-04

Joint ci ratio: 1.754679e-01	ci left: 1.597262e-04	ci right 1.907780e-04	k: 498	n:2850000
Cons ci ratio: 2.408628e-03	ci left: 4.811152e-01	ci right 4.822757e-01	k: 1372832	n:2850000
KS ci ratio: 1.128549e-01	ci left: 3.992733e-04	ci right 4.473653e-04	k: 1205	n:2850000
NEU2   2850000 perm   3214 sec   (887 perm/sec)   p_kst 4.228070e-04   p_cons 4.816954e-01   p_joint 1.747368e-04

Joint ci ratio: 1.752924e-01	ci left: 1.595020e-04	ci right 1.904759e-04	k: 499	n:2860000
Cons ci ratio: 2.404445e-03	ci left: 4.811096e-01	ci right 4.822681e-01	k: 1377630	n:2860000
KS ci ratio: 1.126682e-01	ci left: 3.992364e-04	ci right 4.472391e-04	k: 1209	n:2860000
NEU2   2860000 perm   3235 sec   (884 perm/sec)   p_kst 4.227273e-04   p_cons 4.816888e-01   p_joint 1.744755e-04

Joint ci ratio: 1.752924e-01	ci left: 1.589463e-04	ci right 1.898122e-04	k: 499	n:2870000
Cons ci ratio: 2.400188e-03	ci left: 4.811239e-01	ci right 4.822804e-01	k: 1382485	n:2870000
KS ci ratio: 1.125288e-01	ci left: 3.988611e-04	ci right 4.467555e-04	k: 1212	n:2870000
NEU2   2870000 perm   3256 sec   (881 perm/sec)   p_kst 4.222997e-04   p_cons 4.817021e-01   p_joint 1.738676e-04

Joint ci ratio: 1.749429e-01	ci left: 1.590584e-04	ci right 1.898780e-04	k: 501	n:2880000
Cons ci ratio: 2.396071e-03	ci left: 4.811137e-01	ci right 4.822682e-01	k: 1387270	n:2880000
KS ci ratio: 1.122976e-01	ci left: 3.991635e-04	ci right 4.469892e-04	k: 1217	n:2880000
NEU2   2880000 perm   3277 sec   (879 perm/sec)   p_kst 4.225694e-04   p_cons 4.816910e-01   p_joint 1.739583e-04

Joint ci ratio: 1.747689e-01	ci left: 1.588389e-04	ci right 1.895821e-04	k: 502	n:2890000
Cons ci ratio: 2.391973e-03	ci left: 4.811040e-01	ci right 4.822565e-01	k: 1392056	n:2890000
KS ci ratio: 1.119762e-01	ci left: 4.001365e-04	ci right 4.479326e-04	k: 1224	n:2890000
NEU2   2890000 perm   3298 sec   (876 perm/sec)   p_kst 4.235294e-04   p_cons 4.816803e-01   p_joint 1.737024e-04

Joint ci ratio: 1.742500e-01	ci left: 1.592805e-04	ci right 1.900080e-04	k: 505	n:2900000
Cons ci ratio: 2.387923e-03	ci left: 4.810889e-01	ci right 4.822394e-01	k: 1396826	n:2900000
KS ci ratio: 1.116576e-01	ci left: 4.011031e-04	ci right 4.488692e-04	k: 1231	n:2900000
NEU2   2900000 perm   3320 sec   (874 perm/sec)   p_kst 4.244828e-04   p_cons 4.816641e-01   p_joint 1.741379e-04

Joint ci ratio: 1.739067e-01	ci left: 1.593904e-04	ci right 1.900723e-04	k: 507	n:2910000
Cons ci ratio: 2.383883e-03	ci left: 4.810759e-01	ci right 4.822245e-01	k: 1401602	n:2910000
KS ci ratio: 1.115671e-01	ci left: 4.003928e-04	ci right 4.480332e-04	k: 1233	n:2910000
NEU2   2910000 perm   3341 sec   (871 perm/sec)   p_kst 4.237113e-04   p_cons 4.816502e-01   p_joint 1.742268e-04

Joint ci ratio: 1.737358e-01	ci left: 1.591721e-04	ci right 1.897787e-04	k: 508	n:2920000
Cons ci ratio: 2.379758e-03	ci left: 4.810853e-01	ci right 4.822319e-01	k: 1406443	n:2920000
KS ci ratio: 1.113868e-01	ci left: 4.003532e-04	ci right 4.479069e-04	k: 1237	n:2920000
NEU2   2920000 perm   3362 sec   (869 perm/sec)   p_kst 4.236301e-04   p_cons 4.816586e-01   p_joint 1.739726e-04

Joint ci ratio: 1.735654e-01	ci left: 1.589554e-04	ci right 1.894871e-04	k: 509	n:2930000
Cons ci ratio: 2.375644e-03	ci left: 4.810967e-01	ci right 4.822413e-01	k: 1411290	n:2930000
KS ci ratio: 1.111625e-01	ci left: 4.006458e-04	ci right 4.481321e-04	k: 1242	n:2930000
NEU2   2930000 perm   3383 sec   (866 perm/sec)   p_kst 4.238908e-04   p_cons 4.816689e-01   p_joint 1.737201e-04

Joint ci ratio: 1.732260e-01	ci left: 1.590654e-04	ci right 1.895524e-04	k: 511	n:2940000
Cons ci ratio: 2.371737e-03	ci left: 4.810688e-01	ci right 4.822115e-01	k: 1416022	n:2940000
KS ci ratio: 1.107621e-01	ci left: 4.022594e-04	ci right 4.497540e-04	k: 1251	n:2940000
NEU2   2940000 perm   3405 sec   (863 perm/sec)   p_kst 4.255102e-04   p_cons 4.816401e-01   p_joint 1.738095e-04

Joint ci ratio: 1.727207e-01	ci left: 1.594992e-04	ci right 1.899707e-04	k: 514	n:2950000
Cons ci ratio: 2.367697e-03	ci left: 4.810734e-01	ci right 4.822141e-01	k: 1420849	n:2950000
KS ci ratio: 1.104977e-01	ci left: 4.028734e-04	ci right 4.503196e-04	k: 1257	n:2950000
NEU2   2950000 perm   3427 sec   (861 perm/sec)   p_kst 4.261017e-04   p_cons 4.816437e-01   p_joint 1.742373e-04

Joint ci ratio: 1.725533e-01	ci left: 1.592836e-04	ci right 1.896814e-04	k: 515	n:2960000
Cons ci ratio: 2.363736e-03	ci left: 4.810654e-01	ci right 4.822042e-01	k: 1425639	n:2960000
KS ci ratio: 1.104100e-01	ci left: 4.021694e-04	ci right 4.494926e-04	k: 1259	n:2960000
NEU2   2960000 perm   3449 sec   (858 perm/sec)   p_kst 4.253378e-04   p_cons 4.816348e-01   p_joint 1.739865e-04

Joint ci ratio: 1.722199e-01	ci left: 1.593916e-04	ci right 1.897451e-04	k: 517	n:2970000
Cons ci ratio: 2.359786e-03	ci left: 4.810595e-01	ci right 4.821964e-01	k: 1430435	n:2970000
KS ci ratio: 1.102351e-01	ci left: 4.021249e-04	ci right 4.493631e-04	k: 1263	n:2970000
NEU2   2970000 perm   3470 sec   (856 perm/sec)   p_kst 4.252525e-04   p_cons 4.816279e-01   p_joint 1.740741e-04

Joint ci ratio: 1.717233e-01	ci left: 1.598201e-04	ci right 1.901584e-04	k: 520	n:2980000
Cons ci ratio: 2.355724e-03	ci left: 4.810815e-01	ci right 4.822165e-01	k: 1435314	n:2980000
KS ci ratio: 1.100611e-01	ci left: 4.020808e-04	ci right 4.492344e-04	k: 1267	n:2980000
NEU2   2980000 perm   3492 sec   (853 perm/sec)   p_kst 4.251678e-04   p_cons 4.816490e-01   p_joint 1.744966e-04

Joint ci ratio: 1.712310e-01	ci left: 1.602459e-04	ci right 1.905688e-04	k: 523	n:2990000
Cons ci ratio: 2.351857e-03	ci left: 4.810663e-01	ci right 4.821993e-01	k: 1440082	n:2990000
KS ci ratio: 1.097585e-01	ci left: 4.030128e-04	ci right 4.501374e-04	k: 1274	n:2990000
NEU2   2990000 perm   3514 sec   (851 perm/sec)   p_kst 4.260870e-04   p_cons 4.816328e-01   p_joint 1.749164e-04

Joint ci ratio: 1.710678e-01	ci left: 1.600308e-04	ci right 1.902812e-04	k: 524	n:3000000
Cons ci ratio: 2.347877e-03	ci left: 4.810794e-01	ci right 4.822106e-01	k: 1444935	n:3000000
KS ci ratio: 1.094584e-01	ci left: 4.039388e-04	ci right 4.510342e-04	k: 1281	n:3000000
NEU2   3000000 perm   3536 sec   (848 perm/sec)   p_kst 4.270000e-04   p_cons 4.816450e-01   p_joint 1.746667e-04

Joint ci ratio: 1.705811e-01	ci left: 1.604532e-04	ci right 1.906882e-04	k: 527	n:3010000
Cons ci ratio: 2.343937e-03	ci left: 4.810882e-01	ci right 4.822175e-01	k: 1449775	n:3010000
KS ci ratio: 1.092031e-01	ci left: 4.045357e-04	ci right 4.515836e-04	k: 1287	n:3010000
NEU2   3010000 perm   3558 sec   (846 perm/sec)   p_kst 4.275748e-04   p_cons 4.816528e-01   p_joint 1.750831e-04

Joint ci ratio: 1.704198e-01	ci left: 1.602389e-04	ci right 1.904021e-04	k: 528	n:3020000
Cons ci ratio: 2.340060e-03	ci left: 4.810876e-01	ci right 4.822150e-01	k: 1454587	n:3020000
KS ci ratio: 1.089918e-01	ci left: 4.048066e-04	ci right 4.517891e-04	k: 1292	n:3020000
NEU2   3020000 perm   3581 sec   (843 perm/sec)   p_kst 4.278146e-04   p_cons 4.816513e-01   p_joint 1.748344e-04

Joint ci ratio: 1.702590e-01	ci left: 1.600260e-04	ci right 1.901178e-04	k: 529	n:3030000
Cons ci ratio: 2.336181e-03	ci left: 4.810917e-01	ci right 4.822172e-01	k: 1459413	n:3030000
KS ci ratio: 1.088236e-01	ci left: 4.047548e-04	ci right 4.516541e-04	k: 1296	n:3030000
NEU2   3030000 perm   3603 sec   (841 perm/sec)   p_kst 4.277228e-04   p_cons 4.816545e-01   p_joint 1.745875e-04

Joint ci ratio: 1.699387e-01	ci left: 1.601295e-04	ci right 1.901783e-04	k: 531	n:3040000
Cons ci ratio: 2.332337e-03	ci left: 4.810921e-01	ci right 4.822158e-01	k: 1464228	n:3040000
KS ci ratio: 1.085727e-01	ci left: 4.053434e-04	ci right 4.521957e-04	k: 1302	n:3040000
NEU2   3040000 perm   3625 sec   (839 perm/sec)   p_kst 4.282895e-04   p_cons 4.816539e-01   p_joint 1.746711e-04

Joint ci ratio: 1.697792e-01	ci left: 1.599184e-04	ci right 1.898965e-04	k: 532	n:3050000
Cons ci ratio: 2.328596e-03	ci left: 4.810748e-01	ci right 4.821967e-01	k: 1468989	n:3050000
KS ci ratio: 1.084480e-01	ci left: 4.049713e-04	ci right 4.517234e-04	k: 1305	n:3050000
NEU2   3050000 perm   3647 sec   (836 perm/sec)   p_kst 4.278689e-04   p_cons 4.816357e-01   p_joint 1.744262e-04

Joint ci ratio: 1.693034e-01	ci left: 1.603346e-04	ci right 1.902979e-04	k: 535	n:3060000
Cons ci ratio: 2.324883e-03	ci left: 4.810554e-01	ci right 4.821754e-01	k: 1473743	n:3060000
KS ci ratio: 1.081584e-01	ci left: 4.058735e-04	ci right 4.525967e-04	k: 1312	n:3060000
NEU2   3060000 perm   3670 sec   (834 perm/sec)   p_kst 4.287582e-04   p_cons 4.816154e-01   p_joint 1.748366e-04

Joint ci ratio: 1.689884e-01	ci left: 1.604362e-04	ci right 1.903570e-04	k: 537	n:3070000
Cons ci ratio: 2.321146e-03	ci left: 4.810448e-01	ci right 4.821630e-01	k: 1478524	n:3070000
KS ci ratio: 1.080351e-01	ci left: 4.055022e-04	ci right 4.521260e-04	k: 1315	n:3070000
NEU2   3070000 perm   3692 sec   (832 perm/sec)   p_kst 4.283388e-04   p_cons 4.816039e-01   p_joint 1.749186e-04

Joint ci ratio: 1.686751e-01	ci left: 1.605372e-04	ci right 1.904158e-04	k: 539	n:3080000
Cons ci ratio: 2.317327e-03	ci left: 4.810561e-01	ci right 4.821725e-01	k: 1483372	n:3080000
KS ci ratio: 1.078305e-01	ci left: 4.057652e-04	ci right 4.523253e-04	k: 1320	n:3080000
NEU2   3080000 perm   3715 sec   (829 perm/sec)   p_kst 4.285714e-04   p_cons 4.816143e-01   p_joint 1.750000e-04

Joint ci ratio: 1.686752e-01	ci left: 1.600177e-04	ci right 1.897995e-04	k: 539	n:3090000
Cons ci ratio: 2.313672e-03	ci left: 4.810359e-01	ci right 4.821505e-01	k: 1488123	n:3090000
KS ci ratio: 1.077897e-01	ci left: 4.047669e-04	ci right 4.511938e-04	k: 1321	n:3090000
NEU2   3090000 perm   3738 sec   (827 perm/sec)   p_kst 4.275081e-04   p_cons 4.815932e-01   p_joint 1.744337e-04

Joint ci ratio: 1.683637e-01	ci left: 1.601195e-04	ci right 1.898596e-04	k: 541	n:3100000
Cons ci ratio: 2.309977e-03	ci left: 4.810282e-01	ci right 4.821409e-01	k: 1492912	n:3100000
KS ci ratio: 1.077083e-01	ci left: 4.040890e-04	ci right 4.504009e-04	k: 1323	n:3100000
NEU2   3100000 perm   3760 sec   (824 perm/sec)   p_kst 4.267742e-04   p_cons 4.815845e-01   p_joint 1.745161e-04

Joint ci ratio: 1.682086e-01	ci left: 1.599126e-04	ci right 1.895842e-04	k: 542	n:3110000
Cons ci ratio: 2.306297e-03	ci left: 4.810211e-01	ci right 4.821320e-01	k: 1497703	n:3110000
KS ci ratio: 1.075460e-01	ci left: 4.040412e-04	ci right 4.502734e-04	k: 1327	n:3110000
NEU2   3110000 perm   3783 sec   (822 perm/sec)   p_kst 4.266881e-04   p_cons 4.815765e-01   p_joint 1.742765e-04

Joint ci ratio: 1.674394e-01	ci left: 1.609353e-04	ci right 1.906464e-04	k: 547	n:3120000
Cons ci ratio: 2.302552e-03	ci left: 4.810320e-01	ci right 4.821411e-01	k: 1502550	n:3120000
KS ci ratio: 1.073038e-01	ci left: 4.046177e-04	ci right 4.508050e-04	k: 1333	n:3120000
NEU2   3120000 perm   3806 sec   (820 perm/sec)   p_kst 4.272436e-04   p_cons 4.815865e-01   p_joint 1.753205e-04

Joint ci ratio: 1.671346e-01	ci left: 1.610334e-04	ci right 1.907030e-04	k: 549	n:3130000
Cons ci ratio: 2.298892e-03	ci left: 4.810284e-01	ci right 4.821358e-01	k: 1507352	n:3130000
KS ci ratio: 1.071834e-01	ci left: 4.042577e-04	ci right 4.503489e-04	k: 1336	n:3130000
NEU2   3130000 perm   3828 sec   (818 perm/sec)   p_kst 4.268371e-04   p_cons 4.815821e-01   p_joint 1.753994e-04

Joint ci ratio: 1.669829e-01	ci left: 1.608257e-04	ci right 1.904274e-04	k: 550	n:3140000
Cons ci ratio: 2.295194e-03	ci left: 4.810367e-01	ci right 4.821423e-01	k: 1512191	n:3140000
KS ci ratio: 1.071034e-01	ci left: 4.035901e-04	ci right 4.495686e-04	k: 1338	n:3140000
NEU2   3140000 perm   3852 sec   (815 perm/sec)   p_kst 4.261146e-04   p_cons 4.815895e-01   p_joint 1.751592e-04

Joint ci ratio: 1.669830e-01	ci left: 1.603151e-04	ci right 1.898229e-04	k: 550	n:3150000
Cons ci ratio: 2.291549e-03	ci left: 4.810373e-01	ci right 4.821412e-01	k: 1517006	n:3150000
KS ci ratio: 1.070235e-01	ci left: 4.029268e-04	ci right 4.487934e-04	k: 1340	n:3150000
NEU2   3150000 perm   3874 sec   (813 perm/sec)   p_kst 4.253968e-04   p_cons 4.815892e-01   p_joint 1.746032e-04

Joint ci ratio: 1.669830e-01	ci left: 1.598078e-04	ci right 1.892222e-04	k: 550	n:3160000
Cons ci ratio: 2.287999e-03	ci left: 4.810211e-01	ci right 4.821232e-01	k: 1521768	n:3160000
KS ci ratio: 1.069837e-01	ci left: 4.019597e-04	ci right 4.476981e-04	k: 1341	n:3160000
NEU2   3160000 perm   3897 sec   (811 perm/sec)   p_kst 4.243671e-04   p_cons 4.815722e-01   p_joint 1.740506e-04

Joint ci ratio: 1.669831e-01	ci left: 1.593037e-04	ci right 1.886253e-04	k: 550	n:3170000
Cons ci ratio: 2.284352e-03	ci left: 4.810296e-01	ci right 4.821300e-01	k: 1526608	n:3170000
KS ci ratio: 1.068643e-01	ci left: 4.016127e-04	ci right 4.472574e-04	k: 1344	n:3170000
NEU2   3170000 perm   3920 sec   (809 perm/sec)   p_kst 4.239748e-04   p_cons 4.815798e-01   p_joint 1.735016e-04

Joint ci ratio: 1.666808e-01	ci left: 1.594054e-04	ci right 1.886873e-04	k: 552	n:3180000
Cons ci ratio: 2.280749e-03	ci left: 4.810324e-01	ci right 4.821311e-01	k: 1531430	n:3180000
KS ci ratio: 1.065085e-01	ci left: 4.031045e-04	ci right 4.487566e-04	k: 1353	n:3180000
NEU2   3180000 perm   3944 sec   (806 perm/sec)   p_kst 4.254717e-04   p_cons 4.815818e-01   p_joint 1.735849e-04

Joint ci ratio: 1.663802e-01	ci left: 1.595065e-04	ci right 1.887489e-04	k: 554	n:3190000
Cons ci ratio: 2.277113e-03	ci left: 4.810459e-01	ci right 4.821428e-01	k: 1536286	n:3190000
KS ci ratio: 1.063124e-01	ci left: 4.033665e-04	ci right 4.489590e-04	k: 1358	n:3190000
NEU2   3190000 perm   3968 sec   (804 perm/sec)   p_kst 4.257053e-04   p_cons 4.815944e-01   p_joint 1.736677e-04

Joint ci ratio: 1.663803e-01	ci left: 1.590081e-04	ci right 1.881590e-04	k: 554	n:3200000
Cons ci ratio: 2.273487e-03	ci left: 4.810612e-01	ci right 4.821564e-01	k: 1541148	n:3200000
KS ci ratio: 1.061562e-01	ci left: 4.033228e-04	ci right 4.488392e-04	k: 1362	n:3200000
NEU2   3200000 perm   3991 sec   (802 perm/sec)   p_kst 4.256250e-04   p_cons 4.816087e-01   p_joint 1.731250e-04

Joint ci ratio: 1.662306e-01	ci left: 1.588113e-04	ci right 1.878973e-04	k: 555	n:3210000
Cons ci ratio: 2.269928e-03	ci left: 4.810654e-01	ci right 4.821589e-01	k: 1545975	n:3210000
KS ci ratio: 1.060785e-01	ci left: 4.026728e-04	ci right 4.480805e-04	k: 1364	n:3210000
NEU2   3210000 perm   4015 sec   (800 perm/sec)   p_kst 4.249221e-04   p_cons 4.816121e-01   p_joint 1.728972e-04

Joint ci ratio: 1.660813e-01	ci left: 1.586157e-04	ci right 1.876373e-04	k: 556	n:3220000
Cons ci ratio: 2.266413e-03	ci left: 4.810634e-01	ci right 4.821552e-01	k: 1550782	n:3220000
KS ci ratio: 1.058847e-01	ci left: 4.029339e-04	ci right 4.482829e-04	k: 1369	n:3220000
NEU2   3220000 perm   4039 sec   (797 perm/sec)   p_kst 4.251553e-04   p_cons 4.816093e-01   p_joint 1.726708e-04

Joint ci ratio: 1.657840e-01	ci left: 1.587181e-04	ci right 1.877012e-04	k: 558	n:3230000
Cons ci ratio: 2.262918e-03	ci left: 4.810608e-01	ci right 4.821510e-01	k: 1555587	n:3230000
KS ci ratio: 1.056920e-01	ci left: 4.031935e-04	ci right 4.484839e-04	k: 1374	n:3230000
NEU2   3230000 perm   4063 sec   (795 perm/sec)   p_kst 4.253870e-04   p_cons 4.816059e-01   p_joint 1.727554e-04

Joint ci ratio: 1.654882e-01	ci left: 1.588199e-04	ci right 1.877648e-04	k: 560	n:3240000
Cons ci ratio: 2.259484e-03	ci left: 4.810481e-01	ci right 4.821365e-01	k: 1560359	n:3240000
KS ci ratio: 1.053858e-01	ci left: 4.043531e-04	ci right 4.496340e-04	k: 1382	n:3240000
NEU2   3240000 perm   4087 sec   (793 perm/sec)   p_kst 4.265432e-04   p_cons 4.815923e-01   p_joint 1.728395e-04

Joint ci ratio: 1.651940e-01	ci left: 1.589212e-04	ci right 1.878279e-04	k: 562	n:3250000
Cons ci ratio: 2.255877e-03	ci left: 4.810772e-01	ci right 4.821640e-01	k: 1565267	n:3250000
KS ci ratio: 1.052717e-01	ci left: 4.040076e-04	ci right 4.491979e-04	k: 1385	n:3250000
NEU2   3250000 perm   4111 sec   (791 perm/sec)   p_kst 4.261538e-04   p_cons 4.816206e-01   p_joint 1.729231e-04

Joint ci ratio: 1.649013e-01	ci left: 1.590219e-04	ci right 1.878905e-04	k: 564	n:3260000
Cons ci ratio: 2.252317e-03	ci left: 4.810998e-01	ci right 4.821849e-01	k: 1570154	n:3260000
KS ci ratio: 1.050446e-01	ci left: 4.045605e-04	ci right 4.497089e-04	k: 1391	n:3260000
NEU2   3260000 perm   4135 sec   (788 perm/sec)   p_kst 4.266871e-04   p_cons 4.816423e-01   p_joint 1.730061e-04

Joint ci ratio: 1.649014e-01	ci left: 1.585355e-04	ci right 1.873159e-04	k: 564	n:3270000
Cons ci ratio: 2.248912e-03	ci left: 4.810913e-01	ci right 4.821748e-01	k: 1574940	n:3270000
KS ci ratio: 1.049316e-01	ci left: 4.042166e-04	ci right 4.492751e-04	k: 1394	n:3270000
NEU2   3270000 perm   4159 sec   (786 perm/sec)   p_kst 4.262997e-04   p_cons 4.816330e-01   p_joint 1.724771e-04

Joint ci ratio: 1.646103e-01	ci left: 1.586368e-04	ci right 1.873797e-04	k: 566	n:3280000
Cons ci ratio: 2.245520e-03	ci left: 4.810835e-01	ci right 4.821653e-01	k: 1579728	n:3280000
KS ci ratio: 1.047440e-01	ci left: 4.044687e-04	ci right 4.494697e-04	k: 1399	n:3280000
NEU2   3280000 perm   4182 sec   (784 perm/sec)   p_kst 4.265244e-04   p_cons 4.816244e-01   p_joint 1.725610e-04

Joint ci ratio: 1.643207e-01	ci left: 1.587375e-04	ci right 1.874431e-04	k: 568	n:3290000
Cons ci ratio: 2.242078e-03	ci left: 4.810903e-01	ci right 4.821705e-01	k: 1584564	n:3290000
KS ci ratio: 1.045947e-01	ci left: 4.044232e-04	ci right 4.493512e-04	k: 1403	n:3290000
NEU2   3290000 perm   4206 sec   (782 perm/sec)   p_kst 4.264438e-04   p_cons 4.816304e-01   p_joint 1.726444e-04

Joint ci ratio: 1.638892e-01	ci left: 1.591283e-04	ci right 1.878214e-04	k: 571	n:3300000
Cons ci ratio: 2.238668e-03	ci left: 4.810935e-01	ci right 4.821720e-01	k: 1589388	n:3300000
KS ci ratio: 1.043349e-01	ci left: 4.052635e-04	ci right 4.501661e-04	k: 1410	n:3300000
NEU2   3300000 perm   4230 sec   (780 perm/sec)   p_kst 4.272727e-04   p_cons 4.816327e-01   p_joint 1.730303e-04

Joint ci ratio: 1.638892e-01	ci left: 1.586475e-04	ci right 1.872540e-04	k: 571	n:3310000
Cons ci ratio: 2.235325e-03	ci left: 4.810851e-01	ci right 4.821620e-01	k: 1594174	n:3310000
KS ci ratio: 1.041873e-01	ci left: 4.052161e-04	ci right 4.500461e-04	k: 1414	n:3310000
NEU2   3310000 perm   4254 sec   (778 perm/sec)   p_kst 4.271903e-04   p_cons 4.816236e-01   p_joint 1.725076e-04

Joint ci ratio: 1.638893e-01	ci left: 1.581697e-04	ci right 1.866900e-04	k: 571	n:3320000
Cons ci ratio: 2.231812e-03	ci left: 4.811181e-01	ci right 4.821934e-01	k: 1599097	n:3320000
KS ci ratio: 1.040771e-01	ci left: 4.048757e-04	ci right 4.496176e-04	k: 1417	n:3320000
NEU2   3320000 perm   4278 sec   (776 perm/sec)   p_kst 4.268072e-04   p_cons 4.816557e-01   p_joint 1.719880e-04

Joint ci ratio: 1.637462e-01	ci left: 1.579827e-04	ci right 1.864420e-04	k: 572	n:3330000
Cons ci ratio: 2.228658e-03	ci left: 4.810743e-01	ci right 4.821479e-01	k: 1603765	n:3330000
KS ci ratio: 1.040038e-01	ci left: 4.042448e-04	ci right 4.488837e-04	k: 1419	n:3330000
NEU2   3330000 perm   4302 sec   (774 perm/sec)   p_kst 4.261261e-04   p_cons 4.816111e-01   p_joint 1.717718e-04

Joint ci ratio: 1.636036e-01	ci left: 1.577968e-04	ci right 1.861954e-04	k: 573	n:3340000
Cons ci ratio: 2.225375e-03	ci left: 4.810625e-01	ci right 4.821345e-01	k: 1608539	n:3340000
KS ci ratio: 1.038576e-01	ci left: 4.042009e-04	ci right 4.487684e-04	k: 1423	n:3340000
NEU2   3340000 perm   4326 sec   (772 perm/sec)   p_kst 4.260479e-04   p_cons 4.815985e-01   p_joint 1.715569e-04

Joint ci ratio: 1.630364e-01	ci left: 1.584710e-04	ci right 1.868824e-04	k: 577	n:3350000
Cons ci ratio: 2.222022e-03	ci left: 4.810699e-01	ci right 4.821403e-01	k: 1613377	n:3350000
KS ci ratio: 1.037121e-01	ci left: 4.041574e-04	ci right 4.486538e-04	k: 1427	n:3350000
NEU2   3350000 perm   4350 sec   (770 perm/sec)   p_kst 4.259701e-04   p_cons 4.816051e-01   p_joint 1.722388e-04

Joint ci ratio: 1.630365e-01	ci left: 1.579993e-04	ci right 1.863262e-04	k: 577	n:3360000
Cons ci ratio: 2.218745e-03	ci left: 4.810635e-01	ci right 4.821323e-01	k: 1618169	n:3360000
KS ci ratio: 1.036758e-01	ci left: 4.032444e-04	ci right 4.476239e-04	k: 1428	n:3360000
NEU2   3360000 perm   4374 sec   (768 perm/sec)   p_kst 4.250000e-04   p_cons 4.815979e-01   p_joint 1.717262e-04

Joint ci ratio: 1.626150e-01	ci left: 1.583844e-04	ci right 1.866998e-04	k: 580	n:3370000
Cons ci ratio: 2.215437e-03	ci left: 4.810673e-01	ci right 4.821345e-01	k: 1622995	n:3370000
KS ci ratio: 1.034949e-01	ci left: 4.034931e-04	ci right 4.478177e-04	k: 1433	n:3370000
NEU2   3370000 perm   4399 sec   (766 perm/sec)   p_kst 4.252226e-04   p_cons 4.816009e-01   p_joint 1.721068e-04

Joint ci ratio: 1.621967e-01	ci left: 1.587674e-04	ci right 1.870710e-04	k: 583	n:3380000
Cons ci ratio: 2.212155e-03	ci left: 4.810687e-01	ci right 4.821343e-01	k: 1627813	n:3380000
KS ci ratio: 1.033149e-01	ci left: 4.037404e-04	ci right 4.480104e-04	k: 1438	n:3380000
NEU2   3380000 perm   4424 sec   (764 perm/sec)   p_kst 4.254438e-04   p_cons 4.816015e-01   p_joint 1.724852e-04

Joint ci ratio: 1.617817e-01	ci left: 1.591481e-04	ci right 1.874400e-04	k: 586	n:3390000
Cons ci ratio: 2.208803e-03	ci left: 4.810889e-01	ci right 4.821530e-01	k: 1632695	n:3390000
KS ci ratio: 1.030645e-01	ci left: 4.045610e-04	ci right 4.488070e-04	k: 1445	n:3390000
NEU2   3390000 perm   4448 sec   (762 perm/sec)   p_kst 4.262537e-04   p_cons 4.816209e-01   p_joint 1.728614e-04

Joint ci ratio: 1.615068e-01	ci left: 1.592445e-04	ci right 1.875007e-04	k: 588	n:3400000
Cons ci ratio: 2.205502e-03	ci left: 4.811011e-01	ci right 4.821636e-01	k: 1637550	n:3400000
KS ci ratio: 1.029223e-01	ci left: 4.045173e-04	ci right 4.486937e-04	k: 1449	n:3400000
NEU2   3400000 perm   4473 sec   (760 perm/sec)   p_kst 4.261765e-04   p_cons 4.816324e-01   p_joint 1.729412e-04

Joint ci ratio: 1.612333e-01	ci left: 1.593403e-04	ci right 1.875610e-04	k: 590	n:3410000
Cons ci ratio: 2.202336e-03	ci left: 4.810860e-01	ci right 4.821469e-01	k: 1642312	n:3410000
KS ci ratio: 1.027453e-01	ci left: 4.047596e-04	ci right 4.488819e-04	k: 1454	n:3410000
NEU2   3410000 perm   4498 sec   (758 perm/sec)   p_kst 4.263930e-04   p_cons 4.816164e-01   p_joint 1.730205e-04

Joint ci ratio: 1.609611e-01	ci left: 1.594356e-04	ci right 1.876209e-04	k: 592	n:3420000
Cons ci ratio: 2.199126e-03	ci left: 4.810841e-01	ci right 4.821435e-01	k: 1647119	n:3420000
KS ci ratio: 1.025341e-01	ci left: 4.052855e-04	ci right 4.493687e-04	k: 1460	n:3420000
NEU2   3420000 perm   4523 sec   (756 perm/sec)   p_kst 4.269006e-04   p_cons 4.816137e-01   p_joint 1.730994e-04

Joint ci ratio: 1.605555e-01	ci left: 1.598102e-04	ci right 1.879837e-04	k: 595	n:3430000
Cons ci ratio: 2.196016e-03	ci left: 4.810626e-01	ci right 4.821205e-01	k: 1651859	n:3430000
KS ci ratio: 1.023590e-01	ci left: 4.055242e-04	ci right 4.495537e-04	k: 1465	n:3430000
NEU2   3430000 perm   4548 sec   (754 perm/sec)   p_kst 4.271137e-04   p_cons 4.815915e-01   p_joint 1.734694e-04

Joint ci ratio: 1.604210e-01	ci left: 1.596247e-04	ci right 1.877396e-04	k: 596	n:3440000
Cons ci ratio: 2.192797e-03	ci left: 4.810690e-01	ci right 4.821253e-01	k: 1656694	n:3440000
KS ci ratio: 1.022893e-01	ci left: 4.049119e-04	ci right 4.488431e-04	k: 1467	n:3440000
NEU2   3440000 perm   4573 sec   (752 perm/sec)   p_kst 4.264535e-04   p_cons 4.815971e-01   p_joint 1.732558e-04

Joint ci ratio: 1.602868e-01	ci left: 1.594402e-04	ci right 1.874969e-04	k: 597	n:3450000
Cons ci ratio: 2.189556e-03	ci left: 4.810836e-01	ci right 4.821384e-01	k: 1661558	n:3450000
KS ci ratio: 1.021156e-01	ci left: 4.051505e-04	ci right 4.490284e-04	k: 1472	n:3450000
NEU2   3450000 perm   4598 sec   (750 perm/sec)   p_kst 4.266667e-04   p_cons 4.816110e-01   p_joint 1.730435e-04

Joint ci ratio: 1.600194e-01	ci left: 1.595343e-04	ci right 1.875562e-04	k: 599	n:3460000
Cons ci ratio: 2.186407e-03	ci left: 4.810803e-01	ci right 4.821336e-01	k: 1666360	n:3460000
KS ci ratio: 1.018049e-01	ci left: 4.065144e-04	ci right 4.503981e-04	k: 1481	n:3460000
NEU2   3460000 perm   4623 sec   (748 perm/sec)   p_kst 4.280347e-04   p_cons 4.816069e-01   p_joint 1.731214e-04

Joint ci ratio: 1.600195e-01	ci left: 1.590745e-04	ci right 1.870157e-04	k: 599	n:3470000
Cons ci ratio: 2.183270e-03	ci left: 4.810776e-01	ci right 4.821293e-01	k: 1671164	n:3470000
KS ci ratio: 1.017021e-01	ci left: 4.061854e-04	ci right 4.499867e-04	k: 1484	n:3470000
NEU2   3470000 perm   4648 sec   (747 perm/sec)   p_kst 4.276657e-04   p_cons 4.816035e-01   p_joint 1.726225e-04

Joint ci ratio: 1.598863e-01	ci left: 1.588933e-04	ci right 1.867771e-04	k: 600	n:3480000
Cons ci ratio: 2.180087e-03	ci left: 4.810884e-01	ci right 4.821386e-01	k: 1676015	n:3480000
KS ci ratio: 1.015654e-01	ci left: 4.061384e-04	ci right 4.498723e-04	k: 1488	n:3480000
NEU2   3480000 perm   4673 sec   (745 perm/sec)   p_kst 4.275862e-04   p_cons 4.816135e-01   p_joint 1.724138e-04

Joint ci ratio: 1.596209e-01	ci left: 1.589882e-04	ci right 1.868379e-04	k: 602	n:3490000
Cons ci ratio: 2.176891e-03	ci left: 4.811052e-01	ci right 4.821539e-01	k: 1680887	n:3490000
KS ci ratio: 1.014632e-01	ci left: 4.058125e-04	ci right 4.494646e-04	k: 1491	n:3490000
NEU2   3490000 perm   4699 sec   (743 perm/sec)   p_kst 4.272206e-04   p_cons 4.816295e-01   p_joint 1.724928e-04

Joint ci ratio: 1.594888e-01	ci left: 1.588082e-04	ci right 1.866012e-04	k: 603	n:3500000
Cons ci ratio: 2.173841e-03	ci left: 4.810918e-01	ci right 4.821391e-01	k: 1685654	n:3500000
KS ci ratio: 1.014293e-01	ci left: 4.049315e-04	ci right 4.484734e-04	k: 1492	n:3500000
NEU2   3500000 perm   4725 sec   (741 perm/sec)   p_kst 4.262857e-04   p_cons 4.816154e-01   p_joint 1.722857e-04

Joint ci ratio: 1.593569e-01	ci left: 1.586293e-04	ci right 1.863658e-04	k: 604	n:3510000
Cons ci ratio: 2.170728e-03	ci left: 4.810957e-01	ci right 4.821414e-01	k: 1690481	n:3510000
KS ci ratio: 1.012937e-01	ci left: 4.048885e-04	ci right 4.483642e-04	k: 1496	n:3510000
NEU2   3510000 perm   4750 sec   (739 perm/sec)   p_kst 4.262108e-04   p_cons 4.816185e-01   p_joint 1.720798e-04

Joint ci ratio: 1.592254e-01	ci left: 1.584514e-04	ci right 1.861318e-04	k: 605	n:3520000
Cons ci ratio: 2.167675e-03	ci left: 4.810890e-01	ci right 4.821332e-01	k: 1695271	n:3520000
KS ci ratio: 1.012261e-01	ci left: 4.042921e-04	ci right 4.476730e-04	k: 1498	n:3520000
NEU2   3520000 perm   4776 sec   (737 perm/sec)   p_kst 4.255682e-04   p_cons 4.816111e-01   p_joint 1.718750e-04

Joint ci ratio: 1.589633e-01	ci left: 1.585466e-04	ci right 1.861936e-04	k: 607	n:3530000
Cons ci ratio: 2.164598e-03	ci left: 4.810908e-01	ci right 4.821336e-01	k: 1700091	n:3530000
KS ci ratio: 1.010577e-01	ci left: 4.045274e-04	ci right 4.478571e-04	k: 1503	n:3530000
NEU2   3530000 perm   4802 sec   (735 perm/sec)   p_kst 4.257790e-04   p_cons 4.816122e-01   p_joint 1.719547e-04

Joint ci ratio: 1.588327e-01	ci left: 1.583699e-04	ci right 1.859614e-04	k: 608	n:3540000
Cons ci ratio: 2.161553e-03	ci left: 4.810881e-01	ci right 4.821294e-01	k: 1704895	n:3540000
KS ci ratio: 1.009571e-01	ci left: 4.042107e-04	ci right 4.474608e-04	k: 1506	n:3540000
NEU2   3540000 perm   4827 sec   (733 perm/sec)   p_kst 4.254237e-04   p_cons 4.816088e-01   p_joint 1.717514e-04

Joint ci ratio: 1.587025e-01	ci left: 1.581943e-04	ci right 1.857304e-04	k: 609	n:3550000
Cons ci ratio: 2.158556e-03	ci left: 4.810773e-01	ci right 4.821171e-01	k: 1709670	n:3550000
KS ci ratio: 1.006569e-01	ci left: 4.055434e-04	ci right 4.487994e-04	k: 1515	n:3550000
NEU2   3550000 perm   4853 sec   (732 perm/sec)   p_kst 4.267606e-04   p_cons 4.815972e-01   p_joint 1.715493e-04

Joint ci ratio: 1.584430e-01	ci left: 1.582895e-04	ci right 1.857928e-04	k: 611	n:3560000
Cons ci ratio: 2.155594e-03	ci left: 4.810615e-01	ci right 4.820998e-01	k: 1714427	n:3560000
KS ci ratio: 1.005575e-01	ci left: 4.052257e-04	ci right 4.484027e-04	k: 1518	n:3560000
NEU2   3560000 perm   4879 sec   (730 perm/sec)   p_kst 4.264045e-04   p_cons 4.815806e-01   p_joint 1.716292e-04

Joint ci ratio: 1.584430e-01	ci left: 1.578461e-04	ci right 1.852723e-04	k: 611	n:3570000
Cons ci ratio: 2.152506e-03	ci left: 4.810776e-01	ci right 4.821145e-01	k: 1719298	n:3570000
KS ci ratio: 1.004254e-01	ci left: 4.051829e-04	ci right 4.482952e-04	k: 1522	n:3570000
NEU2   3570000 perm   4904 sec   (728 perm/sec)   p_kst 4.263305e-04   p_cons 4.815961e-01   p_joint 1.711485e-04

Joint ci ratio: 1.583137e-01	ci left: 1.576734e-04	ci right 1.850452e-04	k: 612	n:3580000
Cons ci ratio: 2.149479e-03	ci left: 4.810828e-01	ci right 4.821183e-01	k: 1724130	n:3580000
KS ci ratio: 1.003266e-01	ci left: 4.048680e-04	ci right 4.479020e-04	k: 1525	n:3580000
NEU2   3580000 perm   4930 sec   (726 perm/sec)   p_kst 4.259777e-04   p_cons 4.816006e-01   p_joint 1.709497e-04

Joint ci ratio: 1.581848e-01	ci left: 1.575017e-04	ci right 1.848193e-04	k: 613	n:3590000
Cons ci ratio: 2.146527e-03	ci left: 4.810733e-01	ci right 4.821073e-01	k: 1728909	n:3590000
KS ci ratio: 1.001954e-01	ci left: 4.048265e-04	ci right 4.477965e-04	k: 1529	n:3590000
NEU2   3590000 perm   4956 sec   (724 perm/sec)   p_kst 4.259053e-04   p_cons 4.815903e-01   p_joint 1.707521e-04

Joint ci ratio: 1.580561e-01	ci left: 1.573310e-04	ci right 1.845947e-04	k: 614	n:3600000
Cons ci ratio: 2.143520e-03	ci left: 4.810796e-01	ci right 4.821121e-01	k: 1733745	n:3600000
KS ci ratio: 1.001627e-01	ci left: 4.039728e-04	ci right 4.468374e-04	k: 1530	n:3600000
NEU2   3600000 perm   4982 sec   (723 perm/sec)   p_kst 4.250000e-04   p_cons 4.815958e-01   p_joint 1.705556e-04

Joint ci ratio: 1.579278e-01	ci left: 1.571613e-04	ci right 1.843713e-04	k: 615	n:3610000
Cons ci ratio: 2.140613e-03	ci left: 4.810653e-01	ci right 4.820965e-01	k: 1738507	n:3610000
KS ci ratio: 1.000321e-01	ci left: 4.039341e-04	ci right 4.467354e-04	k: 1534	n:3610000
NEU2   3610000 perm   5008 sec   (721 perm/sec)   p_kst 4.249307e-04   p_cons 4.815809e-01   p_joint 1.703601e-04

Joint ci ratio: 1.576720e-01	ci left: 1.572578e-04	ci right 1.844363e-04	k: 617	n:3620000
Cons ci ratio: 2.137599e-03	ci left: 4.810791e-01	ci right 4.821088e-01	k: 1743370	n:3620000
KS ci ratio: 9.990204e-02	ci left: 4.038956e-04	ci right 4.466339e-04	k: 1538	n:3620000
NEU2   3620000 perm   5034 sec   (719 perm/sec)   p_kst 4.248619e-04   p_cons 4.815939e-01   p_joint 1.704420e-04

Joint ci ratio: 1.576721e-01	ci left: 1.568246e-04	ci right 1.839282e-04	k: 617	n:3630000
Cons ci ratio: 2.134641e-03	ci left: 4.810823e-01	ci right 4.821106e-01	k: 1748195	n:3630000
KS ci ratio: 9.983722e-02	ci left: 4.033201e-04	ci right 4.459682e-04	k: 1540	n:3630000
NEU2   3630000 perm   5060 sec   (717 perm/sec)   p_kst 4.242424e-04   p_cons 4.815964e-01   p_joint 1.699725e-04

Joint ci ratio: 1.576721e-01	ci left: 1.563937e-04	ci right 1.834229e-04	k: 617	n:3640000
Cons ci ratio: 2.131780e-03	ci left: 4.810660e-01	ci right 4.820928e-01	k: 1752949	n:3640000
KS ci ratio: 9.974020e-02	ci left: 4.030157e-04	ci right 4.455878e-04	k: 1543	n:3640000
NEU2   3640000 perm   5087 sec   (716 perm/sec)   p_kst 4.239011e-04   p_cons 4.815794e-01   p_joint 1.695055e-04

Joint ci ratio: 1.574176e-01	ci left: 1.564916e-04	ci right 1.834899e-04	k: 619	n:3650000
Cons ci ratio: 2.128951e-03	ci left: 4.810448e-01	ci right 4.820703e-01	k: 1757685	n:3650000
KS ci ratio: 9.945071e-02	ci left: 4.043159e-04	ci right 4.468941e-04	k: 1552	n:3650000
NEU2   3650000 perm   5113 sec   (714 perm/sec)   p_kst 4.252055e-04   p_cons 4.815575e-01   p_joint 1.695890e-04

Joint ci ratio: 1.572908e-01	ci left: 1.563265e-04	ci right 1.832726e-04	k: 620	n:3660000
Cons ci ratio: 2.125967e-03	ci left: 4.810628e-01	ci right 4.820869e-01	k: 1762564	n:3660000
KS ci ratio: 9.941875e-02	ci left: 4.034776e-04	ci right 4.459531e-04	k: 1553	n:3660000
NEU2   3660000 perm   5140 sec   (712 perm/sec)   p_kst 4.243169e-04   p_cons 4.815749e-01   p_joint 1.693989e-04

Joint ci ratio: 1.569122e-01	ci left: 1.566858e-04	ci right 1.836227e-04	k: 623	n:3670000
Cons ci ratio: 2.123126e-03	ci left: 4.810500e-01	ci right 4.820727e-01	k: 1767330	n:3670000
KS ci ratio: 9.925918e-02	ci left: 4.037068e-04	ci right 4.461342e-04	k: 1558	n:3670000
NEU2   3670000 perm   5166 sec   (710 perm/sec)   p_kst 4.245232e-04   p_cons 4.815613e-01   p_joint 1.697548e-04

Joint ci ratio: 1.565364e-01	ci left: 1.570433e-04	ci right 1.839709e-04	k: 626	n:3680000
Cons ci ratio: 2.120239e-03	ci left: 4.810508e-01	ci right 4.820721e-01	k: 1772146	n:3680000
KS ci ratio: 9.906870e-02	ci left: 4.041998e-04	ci right 4.465928e-04	k: 1564	n:3680000
NEU2   3680000 perm   5193 sec   (709 perm/sec)   p_kst 4.250000e-04   p_cons 4.815614e-01   p_joint 1.701087e-04

Joint ci ratio: 1.562873e-01	ci left: 1.571385e-04	ci right 1.840355e-04	k: 628	n:3690000
Cons ci ratio: 2.117318e-03	ci left: 4.810624e-01	ci right 4.820823e-01	k: 1777002	n:3690000
KS ci ratio: 9.891081e-02	ci left: 4.044259e-04	ci right 4.467710e-04	k: 1569	n:3690000
NEU2   3690000 perm   5220 sec   (707 perm/sec)   p_kst 4.252033e-04   p_cons 4.815724e-01   p_joint 1.701897e-04

Joint ci ratio: 1.561632e-01	ci left: 1.569735e-04	ci right 1.838190e-04	k: 629	n:3700000
Cons ci ratio: 2.114451e-03	ci left: 4.810640e-01	ci right 4.820825e-01	k: 1781821	n:3700000
KS ci ratio: 9.878506e-02	ci left: 4.043872e-04	ci right 4.466713e-04	k: 1573	n:3700000
NEU2   3700000 perm   5247 sec   (705 perm/sec)   p_kst 4.251351e-04   p_cons 4.815732e-01   p_joint 1.700000e-04

Joint ci ratio: 1.556698e-01	ci left: 1.575865e-04	ci right 1.844437e-04	k: 633	n:3710000
Cons ci ratio: 2.111461e-03	ci left: 4.810974e-01	ci right 4.821145e-01	k: 1786758	n:3710000
KS ci ratio: 9.850378e-02	ci left: 4.056632e-04	ci right 4.479531e-04	k: 1582	n:3710000
NEU2   3710000 perm   5273 sec   (704 perm/sec)   p_kst 4.264151e-04   p_cons 4.816059e-01   p_joint 1.706199e-04

Joint ci ratio: 1.551810e-01	ci left: 1.581963e-04	ci right 1.850649e-04	k: 637	n:3720000
Cons ci ratio: 2.108500e-03	ci left: 4.811268e-01	ci right 4.821426e-01	k: 1791681	n:3720000
KS ci ratio: 9.834857e-02	ci left: 4.058837e-04	ci right 4.481260e-04	k: 1587	n:3720000
NEU2   3720000 perm   5301 sec   (702 perm/sec)   p_kst 4.266129e-04   p_cons 4.816347e-01   p_joint 1.712366e-04

Joint ci ratio: 1.551810e-01	ci left: 1.577722e-04	ci right 1.845688e-04	k: 637	n:3730000
Cons ci ratio: 2.105675e-03	ci left: 4.811266e-01	ci right 4.821410e-01	k: 1796494	n:3730000
KS ci ratio: 9.810172e-02	ci left: 4.068877e-04	ci right 4.491221e-04	k: 1595	n:3730000
NEU2   3730000 perm   5328 sec   (700 perm/sec)   p_kst 4.276139e-04   p_cons 4.816338e-01   p_joint 1.707775e-04

Joint ci ratio: 1.549383e-01	ci left: 1.578644e-04	ci right 1.846308e-04	k: 639	n:3740000
Cons ci ratio: 2.102831e-03	ci left: 4.811336e-01	ci right 4.821466e-01	k: 1801334	n:3740000
KS ci ratio: 9.788726e-02	ci left: 4.076255e-04	ci right 4.498387e-04	k: 1602	n:3740000
NEU2   3740000 perm   5354 sec   (698 perm/sec)   p_kst 4.283422e-04   p_cons 4.816401e-01   p_joint 1.708556e-04

Joint ci ratio: 1.549384e-01	ci left: 1.574434e-04	ci right 1.841384e-04	k: 639	n:3750000
Cons ci ratio: 2.099969e-03	ci left: 4.811478e-01	ci right 4.821595e-01	k: 1806201	n:3750000
KS ci ratio: 9.785678e-02	ci left: 4.067987e-04	ci right 4.489123e-04	k: 1603	n:3750000
NEU2   3750000 perm   5381 sec   (697 perm/sec)   p_kst 4.274667e-04   p_cons 4.816536e-01   p_joint 1.704000e-04

Joint ci ratio: 1.548175e-01	ci left: 1.572803e-04	ci right 1.839250e-04	k: 640	n:3760000
Cons ci ratio: 2.097182e-03	ci left: 4.811467e-01	ci right 4.821571e-01	k: 1811011	n:3760000
KS ci ratio: 9.776541e-02	ci left: 4.064951e-04	ci right 4.485358e-04	k: 1606	n:3760000
NEU2   3760000 perm   5408 sec   (695 perm/sec)   p_kst 4.271277e-04   p_cons 4.816519e-01   p_joint 1.702128e-04

Joint ci ratio: 1.545765e-01	ci left: 1.573731e-04	ci right 1.839881e-04	k: 642	n:3770000
Cons ci ratio: 2.094466e-03	ci left: 4.811313e-01	ci right 4.821403e-01	k: 1815767	n:3770000
KS ci ratio: 9.755314e-02	ci left: 4.072283e-04	ci right 4.492481e-04	k: 1613	n:3770000
NEU2   3770000 perm   5436 sec   (694 perm/sec)   p_kst 4.278515e-04   p_cons 4.816358e-01   p_joint 1.702918e-04

Joint ci ratio: 1.544565e-01	ci left: 1.572111e-04	ci right 1.837761e-04	k: 643	n:3780000
Cons ci ratio: 2.091579e-03	ci left: 4.811594e-01	ci right 4.821671e-01	k: 1820687	n:3780000
KS ci ratio: 9.746262e-02	ci left: 4.069253e-04	ci right 4.488727e-04	k: 1616	n:3780000
NEU2   3780000 perm   5463 sec   (692 perm/sec)   p_kst 4.275132e-04   p_cons 4.816632e-01   p_joint 1.701058e-04

Joint ci ratio: 1.544565e-01	ci left: 1.567963e-04	ci right 1.832913e-04	k: 643	n:3790000
Cons ci ratio: 2.088868e-03	ci left: 4.811480e-01	ci right 4.821544e-01	k: 1825458	n:3790000
KS ci ratio: 9.734230e-02	ci left: 4.068813e-04	ci right 4.487694e-04	k: 1620	n:3790000
NEU2   3790000 perm   5490 sec   (690 perm/sec)   p_kst 4.274406e-04   p_cons 4.816512e-01   p_joint 1.696570e-04

Joint ci ratio: 1.542172e-01	ci left: 1.568896e-04	ci right 1.833555e-04	k: 645	n:3800000
Cons ci ratio: 2.086180e-03	ci left: 4.811338e-01	ci right 4.821388e-01	k: 1830218	n:3800000
KS ci ratio: 9.719251e-02	ci left: 4.070943e-04	ci right 4.489362e-04	k: 1625	n:3800000
NEU2   3800000 perm   5518 sec   (689 perm/sec)   p_kst 4.276316e-04   p_cons 4.816363e-01   p_joint 1.697368e-04

Joint ci ratio: 1.542172e-01	ci left: 1.564779e-04	ci right 1.828743e-04	k: 645	n:3810000
Cons ci ratio: 2.083309e-03	ci left: 4.811659e-01	ci right 4.821696e-01	k: 1835154	n:3810000
KS ci ratio: 9.710299e-02	ci left: 4.067941e-04	ci right 4.485644e-04	k: 1628	n:3810000
NEU2   3810000 perm   5545 sec   (687 perm/sec)   p_kst 4.272966e-04   p_cons 4.816677e-01   p_joint 1.692913e-04

Joint ci ratio: 1.537419e-01	ci left: 1.570750e-04	ci right 1.834830e-04	k: 649	n:3820000
Cons ci ratio: 2.080487e-03	ci left: 4.811891e-01	ci right 4.821915e-01	k: 1840057	n:3820000
KS ci ratio: 9.692463e-02	ci left: 4.072618e-04	ci right 4.489990e-04	k: 1634	n:3820000
NEU2   3820000 perm   5573 sec   (685 perm/sec)   p_kst 4.277487e-04   p_cons 4.816903e-01   p_joint 1.698953e-04

Joint ci ratio: 1.536238e-01	ci left: 1.569159e-04	ci right 1.832751e-04	k: 650	n:3830000
Cons ci ratio: 2.077749e-03	ci left: 4.811945e-01	ci right 4.821956e-01	k: 1844892	n:3830000
KS ci ratio: 9.683585e-02	ci left: 4.069627e-04	ci right 4.486289e-04	k: 1637	n:3830000
NEU2   3830000 perm   5600 sec   (684 perm/sec)   p_kst 4.274151e-04   p_cons 4.816950e-01   p_joint 1.697128e-04

Joint ci ratio: 1.536239e-01	ci left: 1.565073e-04	ci right 1.827978e-04	k: 650	n:3840000
Cons ci ratio: 2.075066e-03	ci left: 4.811894e-01	ci right 4.821892e-01	k: 1849687	n:3840000
KS ci ratio: 9.677682e-02	ci left: 4.064111e-04	ci right 4.479940e-04	k: 1639	n:3840000
NEU2   3840000 perm   5628 sec   (682 perm/sec)   p_kst 4.268229e-04   p_cons 4.816893e-01   p_joint 1.692708e-04

Joint ci ratio: 1.535060e-01	ci left: 1.563506e-04	ci right 1.825927e-04	k: 651	n:3850000
Cons ci ratio: 2.072311e-03	ci left: 4.812042e-01	ci right 4.822026e-01	k: 1854558	n:3850000
KS ci ratio: 9.665901e-02	ci left: 4.063694e-04	ci right 4.478945e-04	k: 1643	n:3850000
NEU2   3850000 perm   5655 sec   (681 perm/sec)   p_kst 4.267532e-04   p_cons 4.817034e-01   p_joint 1.690909e-04

Joint ci ratio: 1.535061e-01	ci left: 1.559455e-04	ci right 1.821197e-04	k: 651	n:3860000
Cons ci ratio: 2.069685e-03	ci left: 4.811903e-01	ci right 4.821875e-01	k: 1859319	n:3860000
KS ci ratio: 9.660030e-02	ci left: 4.058222e-04	ci right 4.472648e-04	k: 1645	n:3860000
NEU2   3860000 perm   5683 sec   (679 perm/sec)   p_kst 4.261658e-04   p_cons 4.816889e-01   p_joint 1.686528e-04

Joint ci ratio: 1.533885e-01	ci left: 1.557910e-04	ci right 1.819174e-04	k: 652	n:3870000
Cons ci ratio: 2.067023e-03	ci left: 4.811876e-01	ci right 4.821835e-01	k: 1864123	n:3870000
KS ci ratio: 9.648314e-02	ci left: 4.057822e-04	ci right 4.471676e-04	k: 1649	n:3870000
NEU2   3870000 perm   5711 sec   (678 perm/sec)   p_kst 4.260982e-04   p_cons 4.816855e-01   p_joint 1.684755e-04

Joint ci ratio: 1.530373e-01	ci left: 1.561331e-04	ci right 1.822513e-04	k: 655	n:3880000
Cons ci ratio: 2.064284e-03	ci left: 4.812061e-01	ci right 4.822007e-01	k: 1869009	n:3880000
KS ci ratio: 9.633728e-02	ci left: 4.059940e-04	ci right 4.473349e-04	k: 1654	n:3880000
NEU2   3880000 perm   5738 sec   (676 perm/sec)   p_kst 4.262887e-04   p_cons 4.817034e-01   p_joint 1.688144e-04

Joint ci ratio: 1.529208e-01	ci left: 1.559789e-04	ci right 1.820497e-04	k: 656	n:3890000
Cons ci ratio: 2.061609e-03	ci left: 4.812116e-01	ci right 4.822049e-01	k: 1873845	n:3890000
KS ci ratio: 9.627915e-02	ci left: 4.054520e-04	ci right 4.467114e-04	k: 1656	n:3890000
NEU2   3890000 perm   5767 sec   (675 perm/sec)   p_kst 4.257069e-04   p_cons 4.817082e-01   p_joint 1.686375e-04

Joint ci ratio: 1.525729e-01	ci left: 1.563188e-04	ci right 1.823815e-04	k: 659	n:3900000
Cons ci ratio: 2.058861e-03	ci left: 4.812371e-01	ci right 4.822291e-01	k: 1878759	n:3900000
KS ci ratio: 9.607639e-02	ci left: 4.061641e-04	ci right 4.474040e-04	k: 1663	n:3900000
NEU2   3900000 perm   5794 sec   (673 perm/sec)   p_kst 4.264103e-04   p_cons 4.817331e-01   p_joint 1.689744e-04

Joint ci ratio: 1.522273e-01	ci left: 1.566570e-04	ci right 1.827116e-04	k: 662	n:3910000
Cons ci ratio: 2.056234e-03	ci left: 4.812361e-01	ci right 4.822269e-01	k: 1883570	n:3910000
KS ci ratio: 9.587491e-02	ci left: 4.068726e-04	ci right 4.480930e-04	k: 1670	n:3910000
NEU2   3910000 perm   5823 sec   (672 perm/sec)   p_kst 4.271100e-04   p_cons 4.817315e-01   p_joint 1.693095e-04

Joint ci ratio: 1.522273e-01	ci left: 1.562574e-04	ci right 1.822455e-04	k: 662	n:3920000
Cons ci ratio: 2.053705e-03	ci left: 4.812134e-01	ci right 4.822029e-01	k: 1888296	n:3920000
KS ci ratio: 9.578898e-02	ci left: 4.065817e-04	ci right 4.477336e-04	k: 1673	n:3920000
NEU2   3920000 perm   5851 sec   (670 perm/sec)   p_kst 4.267857e-04   p_cons 4.817082e-01   p_joint 1.688776e-04

Joint ci ratio: 1.522273e-01	ci left: 1.558598e-04	ci right 1.817818e-04	k: 662	n:3930000
Cons ci ratio: 2.051098e-03	ci left: 4.812122e-01	ci right 4.822005e-01	k: 1893106	n:3930000
KS ci ratio: 9.576042e-02	ci left: 4.057955e-04	ci right 4.468548e-04	k: 1674	n:3930000
NEU2   3930000 perm   5879 sec   (669 perm/sec)   p_kst 4.259542e-04   p_cons 4.817064e-01   p_joint 1.684478e-04

Joint ci ratio: 1.518841e-01	ci left: 1.561966e-04	ci right 1.821107e-04	k: 665	n:3940000
Cons ci ratio: 2.048606e-03	ci left: 4.811854e-01	ci right 4.821725e-01	k: 1897815	n:3940000
KS ci ratio: 9.567479e-02	ci left: 4.055087e-04	ci right 4.465003e-04	k: 1677	n:3940000
NEU2   3940000 perm   5907 sec   (667 perm/sec)   p_kst 4.256345e-04   p_cons 4.816789e-01   p_joint 1.687817e-04

Joint ci ratio: 1.516565e-01	ci left: 1.562883e-04	ci right 1.821753e-04	k: 667	n:3950000
Cons ci ratio: 2.045880e-03	ci left: 4.812180e-01	ci right 4.822038e-01	k: 1902758	n:3950000
KS ci ratio: 9.556097e-02	ci left: 4.054706e-04	ci right 4.464068e-04	k: 1681	n:3950000
NEU2   3950000 perm   5935 sec   (666 perm/sec)   p_kst 4.255696e-04   p_cons 4.817109e-01   p_joint 1.688608e-04

Joint ci ratio: 1.514300e-01	ci left: 1.563795e-04	ci right 1.822394e-04	k: 669	n:3960000
Cons ci ratio: 2.043243e-03	ci left: 4.812315e-01	ci right 4.822160e-01	k: 1907626	n:3960000
KS ci ratio: 9.547587e-02	ci left: 4.051861e-04	ci right 4.460552e-04	k: 1684	n:3960000
NEU2   3960000 perm   5964 sec   (664 perm/sec)   p_kst 4.252525e-04   p_cons 4.817237e-01   p_joint 1.689394e-04

Joint ci ratio: 1.512045e-01	ci left: 1.564703e-04	ci right 1.823032e-04	k: 671	n:3970000
Cons ci ratio: 2.040646e-03	ci left: 4.812373e-01	ci right 4.822206e-01	k: 1912464	n:3970000
KS ci ratio: 9.541929e-02	ci left: 4.046572e-04	ci right 4.454474e-04	k: 1686	n:3970000
NEU2   3970000 perm   5993 sec   (662 perm/sec)   p_kst 4.246851e-04   p_cons 4.817290e-01   p_joint 1.690176e-04

Joint ci ratio: 1.510921e-01	ci left: 1.563190e-04	ci right 1.821059e-04	k: 672	n:3980000
Cons ci ratio: 2.037991e-03	ci left: 4.812600e-01	ci right 4.822420e-01	k: 1917369	n:3980000
KS ci ratio: 9.530637e-02	ci left: 4.046216e-04	ci right 4.453572e-04	k: 1690	n:3980000
NEU2   3980000 perm   6021 sec   (661 perm/sec)   p_kst 4.246231e-04   p_cons 4.817510e-01   p_joint 1.688442e-04

Joint ci ratio: 1.509800e-01	ci left: 1.561683e-04	ci right 1.819096e-04	k: 673	n:3990000
Cons ci ratio: 2.035373e-03	ci left: 4.812760e-01	ci right 4.822568e-01	k: 1922248	n:3990000
KS ci ratio: 9.525009e-02	ci left: 4.040968e-04	ci right 4.447542e-04	k: 1692	n:3990000
NEU2   3990000 perm   6050 sec   (660 perm/sec)   p_kst 4.240602e-04   p_cons 4.817664e-01   p_joint 1.686717e-04

Joint ci ratio: 1.508681e-01	ci left: 1.560185e-04	ci right 1.817142e-04	k: 674	n:4000000
Cons ci ratio: 2.032795e-03	ci left: 4.812845e-01	ci right 4.822641e-01	k: 1927097	n:4000000
KS ci ratio: 9.519390e-02	ci left: 4.035746e-04	ci right 4.441543e-04	k: 1694	n:4000000
NEU2   4000000 perm   6079 sec   (658 perm/sec)   p_kst 4.235000e-04   p_cons 4.817743e-01   p_joint 1.685000e-04

Joint ci ratio: 1.506451e-01	ci left: 1.561093e-04	ci right 1.817786e-04	k: 676	n:4010000
Cons ci ratio: 2.030352e-03	ci left: 4.812622e-01	ci right 4.822406e-01	k: 1931823	n:4010000
KS ci ratio: 9.510979e-02	ci left: 4.032985e-04	ci right 4.438126e-04	k: 1697	n:4010000
NEU2   4010000 perm   6108 sec   (657 perm/sec)   p_kst 4.231920e-04   p_cons 4.817514e-01   p_joint 1.685786e-04

Joint ci ratio: 1.506451e-01	ci left: 1.557210e-04	ci right 1.813265e-04	k: 676	n:4020000
Cons ci ratio: 2.027853e-03	ci left: 4.812560e-01	ci right 4.822331e-01	k: 1936613	n:4020000
KS ci ratio: 9.502589e-02	ci left: 4.030238e-04	ci right 4.434726e-04	k: 1700	n:4020000
NEU2   4020000 perm   6137 sec   (655 perm/sec)   p_kst 4.228856e-04   p_cons 4.817445e-01   p_joint 1.681592e-04

Joint ci ratio: 1.505340e-01	ci left: 1.555734e-04	ci right 1.811340e-04	k: 677	n:4030000
Cons ci ratio: 2.025294e-03	ci left: 4.812666e-01	ci right 4.822426e-01	k: 1941471	n:4030000
KS ci ratio: 9.491436e-02	ci left: 4.029928e-04	ci right 4.433883e-04	k: 1704	n:4030000
NEU2   4030000 perm   6166 sec   (654 perm/sec)   p_kst 4.228288e-04   p_cons 4.817546e-01   p_joint 1.679901e-04

Joint ci ratio: 1.503125e-01	ci left: 1.556647e-04	ci right 1.811993e-04	k: 679	n:4040000
Cons ci ratio: 2.022807e-03	ci left: 4.812622e-01	ci right 4.822369e-01	k: 1946268	n:4040000
KS ci ratio: 9.483098e-02	ci left: 4.027202e-04	ci right 4.430510e-04	k: 1707	n:4040000
NEU2   4040000 perm   6195 sec   (652 perm/sec)   p_kst 4.225248e-04   p_cons 4.817495e-01   p_joint 1.680693e-04

Joint ci ratio: 1.500919e-01	ci left: 1.557556e-04	ci right 1.812643e-04	k: 681	n:4050000
Cons ci ratio: 2.020245e-03	ci left: 4.812784e-01	ci right 4.822520e-01	k: 1951149	n:4050000
KS ci ratio: 9.474783e-02	ci left: 4.024490e-04	ci right 4.427153e-04	k: 1710	n:4050000
NEU2   4050000 perm   6224 sec   (651 perm/sec)   p_kst 4.222222e-04   p_cons 4.817652e-01   p_joint 1.681481e-04

Joint ci ratio: 1.496536e-01	ci left: 1.563203e-04	ci right 1.818400e-04	k: 685	n:4060000
Cons ci ratio: 2.017690e-03	ci left: 4.812951e-01	ci right 4.822675e-01	k: 1956032	n:4060000
KS ci ratio: 9.452705e-02	ci left: 4.033816e-04	ci right 4.436419e-04	k: 1718	n:4060000
NEU2   4060000 perm   6253 sec   (649 perm/sec)   p_kst 4.231527e-04   p_cons 4.817813e-01   p_joint 1.687192e-04

Joint ci ratio: 1.494359e-01	ci left: 1.564092e-04	ci right 1.819030e-04	k: 687	n:4070000
Cons ci ratio: 2.015226e-03	ci left: 4.812918e-01	ci right 4.822630e-01	k: 1960834	n:4070000
KS ci ratio: 9.444469e-02	ci left: 4.031101e-04	ci right 4.433064e-04	k: 1721	n:4070000
NEU2   4070000 perm   6283 sec   (648 perm/sec)   p_kst 4.228501e-04   p_cons 4.817774e-01   p_joint 1.687961e-04

Joint ci ratio: 1.491112e-01	ci left: 1.567337e-04	ci right 1.822198e-04	k: 690	n:4080000
Cons ci ratio: 2.012765e-03	ci left: 4.812898e-01	ci right 4.822597e-01	k: 1965641	n:4080000
KS ci ratio: 9.428056e-02	ci left: 4.035580e-04	ci right 4.437252e-04	k: 1727	n:4080000
NEU2   4080000 perm   6312 sec   (646 perm/sec)   p_kst 4.232843e-04   p_cons 4.817748e-01   p_joint 1.691176e-04

Joint ci ratio: 1.490034e-01	ci left: 1.565859e-04	ci right 1.820279e-04	k: 691	n:4090000
Cons ci ratio: 2.010326e-03	ci left: 4.812846e-01	ci right 4.822533e-01	k: 1970435	n:4090000
KS ci ratio: 9.425333e-02	ci left: 4.028100e-04	ci right 4.428905e-04	k: 1728	n:4090000
NEU2   4090000 perm   6341 sec   (645 perm/sec)   p_kst 4.224939e-04   p_cons 4.817689e-01   p_joint 1.689487e-04

Joint ci ratio: 1.488959e-01	ci left: 1.564387e-04	ci right 1.818370e-04	k: 692	n:4100000
Cons ci ratio: 2.007881e-03	ci left: 4.812833e-01	ci right 4.822509e-01	k: 1975245	n:4100000
KS ci ratio: 9.417168e-02	ci left: 4.025420e-04	ci right 4.425592e-04	k: 1731	n:4100000
NEU2   4100000 perm   6370 sec   (644 perm/sec)   p_kst 4.221951e-04   p_cons 4.817671e-01   p_joint 1.687805e-04

Joint ci ratio: 1.485746e-01	ci left: 1.567609e-04	ci right 1.821516e-04	k: 695	n:4110000
Cons ci ratio: 2.005478e-03	ci left: 4.812735e-01	ci right 4.822399e-01	k: 1980020	n:4110000
KS ci ratio: 9.403604e-02	ci left: 4.027505e-04	ci right 4.427276e-04	k: 1736	n:4110000
NEU2   4110000 perm   6400 sec   (642 perm/sec)   p_kst 4.223844e-04   p_cons 4.817567e-01   p_joint 1.690998e-04

Joint ci ratio: 1.483616e-01	ci left: 1.568478e-04	ci right 1.822129e-04	k: 697	n:4120000
Cons ci ratio: 2.002993e-03	ci left: 4.812866e-01	ci right 4.822518e-01	k: 1984889	n:4120000
KS ci ratio: 9.392795e-02	ci left: 4.027211e-04	ci right 4.426467e-04	k: 1740	n:4120000
NEU2   4120000 perm   6429 sec   (641 perm/sec)   p_kst 4.223301e-04   p_cons 4.817692e-01   p_joint 1.691748e-04

Joint ci ratio: 1.481495e-01	ci left: 1.569343e-04	ci right 1.822740e-04	k: 699	n:4130000
Cons ci ratio: 2.000617e-03	ci left: 4.812747e-01	ci right 4.822387e-01	k: 1989655	n:4130000
KS ci ratio: 9.379336e-02	ci left: 4.029282e-04	ci right 4.428140e-04	k: 1745	n:4130000
NEU2   4130000 perm   6459 sec   (639 perm/sec)   p_kst 4.225182e-04   p_cons 4.817567e-01   p_joint 1.692494e-04

Joint ci ratio: 1.481495e-01	ci left: 1.565553e-04	ci right 1.818337e-04	k: 699	n:4140000
Cons ci ratio: 1.998145e-03	ci left: 4.812886e-01	ci right 4.822515e-01	k: 1994528	n:4140000
KS ci ratio: 9.376654e-02	ci left: 4.021908e-04	ci right 4.419916e-04	k: 1746	n:4140000
NEU2   4140000 perm   6489 sec   (638 perm/sec)   p_kst 4.217391e-04   p_cons 4.817700e-01   p_joint 1.688406e-04

Joint ci ratio: 1.479383e-01	ci left: 1.566421e-04	ci right 1.818953e-04	k: 701	n:4150000
Cons ci ratio: 1.995699e-03	ci left: 4.812987e-01	ci right 4.822604e-01	k: 1999385	n:4150000
KS ci ratio: 9.360592e-02	ci left: 4.026336e-04	ci right 4.424062e-04	k: 1752	n:4150000
NEU2   4150000 perm   6519 sec   (637 perm/sec)   p_kst 4.221687e-04   p_cons 4.817795e-01   p_joint 1.689157e-04

Joint ci ratio: 1.479384e-01	ci left: 1.562655e-04	ci right 1.814580e-04	k: 701	n:4160000
Cons ci ratio: 1.993240e-03	ci left: 4.813140e-01	ci right 4.822745e-01	k: 2004264	n:4160000
KS ci ratio: 9.357927e-02	ci left: 4.019005e-04	ci right 4.415888e-04	k: 1753	n:4160000
NEU2   4160000 perm   6548 sec   (635 perm/sec)   p_kst 4.213942e-04   p_cons 4.817942e-01   p_joint 1.685096e-04

Joint ci ratio: 1.477281e-01	ci left: 1.563527e-04	ci right 1.815202e-04	k: 703	n:4170000
Cons ci ratio: 1.990894e-03	ci left: 4.813030e-01	ci right 4.822624e-01	k: 2009034	n:4170000
KS ci ratio: 9.336655e-02	ci left: 4.028103e-04	ci right 4.424931e-04	k: 1761	n:4170000
NEU2   4170000 perm   6578 sec   (634 perm/sec)   p_kst 4.223022e-04   p_cons 4.817827e-01   p_joint 1.685851e-04

Joint ci ratio: 1.476233e-01	ci left: 1.562090e-04	ci right 1.813341e-04	k: 704	n:4180000
Cons ci ratio: 1.988521e-03	ci left: 4.813013e-01	ci right 4.822595e-01	k: 2013842	n:4180000
KS ci ratio: 9.331363e-02	ci left: 4.023139e-04	ci right 4.419241e-04	k: 1763	n:4180000
NEU2   4180000 perm   6608 sec   (633 perm/sec)   p_kst 4.217703e-04   p_cons 4.817804e-01   p_joint 1.684211e-04

Joint ci ratio: 1.475187e-01	ci left: 1.560661e-04	ci right 1.811487e-04	k: 705	n:4190000
Cons ci ratio: 1.986152e-03	ci left: 4.813005e-01	ci right 4.822576e-01	k: 2018654	n:4190000
KS ci ratio: 9.315531e-02	ci left: 4.027523e-04	ci right 4.423348e-04	k: 1769	n:4190000
NEU2   4190000 perm   6638 sec   (631 perm/sec)   p_kst 4.221957e-04   p_cons 4.817790e-01   p_joint 1.682578e-04

Joint ci ratio: 1.474143e-01	ci left: 1.559238e-04	ci right 1.809643e-04	k: 706	n:4200000
Cons ci ratio: 1.983727e-03	ci left: 4.813158e-01	ci right 4.822718e-01	k: 2023534	n:4200000
KS ci ratio: 9.307648e-02	ci left: 4.024911e-04	ci right 4.420125e-04	k: 1772	n:4200000
NEU2   4200000 perm   6668 sec   (630 perm/sec)   p_kst 4.219048e-04   p_cons 4.817938e-01   p_joint 1.680952e-04

Joint ci ratio: 1.474144e-01	ci left: 1.555534e-04	ci right 1.805345e-04	k: 706	n:4210000
Cons ci ratio: 1.981334e-03	ci left: 4.813254e-01	ci right 4.822803e-01	k: 2028390	n:4210000
KS ci ratio: 9.305028e-02	ci left: 4.017670e-04	ci right 4.412057e-04	k: 1773	n:4210000
NEU2   4210000 perm   6698 sec   (629 perm/sec)   p_kst 4.211401e-04   p_cons 4.818029e-01   p_joint 1.676960e-04

Joint ci ratio: 1.472063e-01	ci left: 1.556413e-04	ci right 1.805981e-04	k: 708	n:4220000
Cons ci ratio: 1.978982e-03	ci left: 4.813267e-01	ci right 4.822804e-01	k: 2033211	n:4220000
KS ci ratio: 9.297172e-02	ci left: 4.015093e-04	ci right 4.408876e-04	k: 1776	n:4220000
NEU2   4220000 perm   6729 sec   (627 perm/sec)   p_kst 4.208531e-04   p_cons 4.818036e-01   p_joint 1.677725e-04

Joint ci ratio: 1.468958e-01	ci left: 1.559565e-04	ci right 1.809064e-04	k: 711	n:4230000
Cons ci ratio: 1.976591e-03	ci left: 4.813400e-01	ci right 4.822926e-01	k: 2038083	n:4230000
KS ci ratio: 9.284118e-02	ci left: 4.017147e-04	ci right 4.410548e-04	k: 1781	n:4230000
NEU2   4230000 perm   6759 sec   (626 perm/sec)   p_kst 4.210402e-04   p_cons 4.818163e-01   p_joint 1.680851e-04

Joint ci ratio: 1.466899e-01	ci left: 1.560430e-04	ci right 1.809687e-04	k: 713	n:4240000
Cons ci ratio: 1.974308e-03	ci left: 4.813283e-01	ci right 4.822797e-01	k: 2042849	n:4240000
KS ci ratio: 9.271120e-02	ci left: 4.019192e-04	ci right 4.412212e-04	k: 1786	n:4240000
NEU2   4240000 perm   6790 sec   (624 perm/sec)   p_kst 4.212264e-04   p_cons 4.818040e-01   p_joint 1.681604e-04

Joint ci ratio: 1.462807e-01	ci left: 1.565825e-04	ci right 1.815186e-04	k: 717	n:4250000
Cons ci ratio: 1.972037e-03	ci left: 4.813152e-01	ci right 4.822655e-01	k: 2047609	n:4250000
KS ci ratio: 9.255593e-02	ci left: 4.023525e-04	ci right 4.416275e-04	k: 1792	n:4250000
NEU2   4250000 perm   6821 sec   (623 perm/sec)   p_kst 4.216471e-04   p_cons 4.817904e-01   p_joint 1.687059e-04

Joint ci ratio: 1.459761e-01	ci left: 1.568934e-04	ci right 1.818224e-04	k: 720	n:4260000
Cons ci ratio: 1.969668e-03	ci left: 4.813294e-01	ci right 4.822786e-01	k: 2052485	n:4260000
KS ci ratio: 9.235009e-02	ci left: 4.032426e-04	ci right 4.425121e-04	k: 1800	n:4260000
NEU2   4260000 perm   6851 sec   (622 perm/sec)   p_kst 4.225352e-04   p_cons 4.818040e-01   p_joint 1.690141e-04

Joint ci ratio: 1.458749e-01	ci left: 1.567517e-04	ci right 1.816394e-04	k: 721	n:4270000
Cons ci ratio: 1.967329e-03	ci left: 4.813377e-01	ci right 4.822858e-01	k: 2057336	n:4270000
KS ci ratio: 9.219663e-02	ci left: 4.036709e-04	ci right 4.429133e-04	k: 1806	n:4270000
NEU2   4270000 perm   6882 sec   (620 perm/sec)   p_kst 4.229508e-04   p_cons 4.818117e-01   p_joint 1.688525e-04

Joint ci ratio: 1.454725e-01	ci left: 1.572859e-04	ci right 1.821836e-04	k: 725	n:4280000
Cons ci ratio: 1.964985e-03	ci left: 4.813496e-01	ci right 4.822966e-01	k: 2062203	n:4280000
KS ci ratio: 9.206933e-02	ci left: 4.038691e-04	ci right 4.430736e-04	k: 1811	n:4280000
NEU2   4280000 perm   6912 sec   (619 perm/sec)   p_kst 4.231308e-04   p_cons 4.818231e-01   p_joint 1.693925e-04

Joint ci ratio: 1.451728e-01	ci left: 1.575932e-04	ci right 1.824836e-04	k: 728	n:4290000
Cons ci ratio: 1.962710e-03	ci left: 4.813460e-01	ci right 4.822918e-01	k: 2067003	n:4290000
KS ci ratio: 9.184148e-02	ci left: 4.049773e-04	ci right 4.441869e-04	k: 1820	n:4290000
NEU2   4290000 perm   6943 sec   (618 perm/sec)   p_kst 4.242424e-04   p_cons 4.818189e-01   p_joint 1.696970e-04

Joint ci ratio: 1.446775e-01	ci left: 1.583473e-04	ci right 1.832642e-04	k: 733	n:4300000
Cons ci ratio: 1.960453e-03	ci left: 4.813397e-01	ci right 4.822845e-01	k: 2071792	n:4300000
KS ci ratio: 9.166543e-02	ci left: 4.056261e-04	ci right 4.448192e-04	k: 1827	n:4300000
NEU2   4300000 perm   6974 sec   (617 perm/sec)   p_kst 4.248837e-04   p_cons 4.818121e-01   p_joint 1.704651e-04

Joint ci ratio: 1.445790e-01	ci left: 1.582035e-04	ci right 1.830794e-04	k: 734	n:4310000
Cons ci ratio: 1.958184e-03	ci left: 4.813386e-01	ci right 4.822823e-01	k: 2076603	n:4310000
KS ci ratio: 9.151535e-02	ci left: 4.060452e-04	ci right 4.452111e-04	k: 1833	n:4310000
NEU2   4310000 perm   7004 sec   (615 perm/sec)   p_kst 4.252900e-04   p_cons 4.818104e-01   p_joint 1.703016e-04

Joint ci ratio: 1.443827e-01	ci left: 1.582836e-04	ci right 1.831352e-04	k: 736	n:4320000
Cons ci ratio: 1.956016e-03	ci left: 4.813137e-01	ci right 4.822563e-01	k: 2081311	n:4320000
KS ci ratio: 9.139085e-02	ci left: 4.062362e-04	ci right 4.453644e-04	k: 1838	n:4320000
NEU2   4320000 perm   7035 sec   (614 perm/sec)   p_kst 4.254630e-04   p_cons 4.817850e-01   p_joint 1.703704e-04

Joint ci ratio: 1.442849e-01	ci left: 1.581406e-04	ci right 1.829516e-04	k: 737	n:4330000
Cons ci ratio: 1.953724e-03	ci left: 4.813223e-01	ci right 4.822638e-01	k: 2086164	n:4330000
KS ci ratio: 9.134121e-02	ci left: 4.057494e-04	ci right 4.448083e-04	k: 1840	n:4330000
NEU2   4330000 perm   7066 sec   (613 perm/sec)   p_kst 4.249423e-04   p_cons 4.817931e-01   p_joint 1.702079e-04

Joint ci ratio: 1.439925e-01	ci left: 1.584425e-04	ci right 1.832462e-04	k: 740	n:4340000
Cons ci ratio: 1.951502e-03	ci left: 4.813153e-01	ci right 4.822557e-01	k: 2090949	n:4340000
KS ci ratio: 9.119271e-02	ci left: 4.061654e-04	ci right 4.451974e-04	k: 1846	n:4340000
NEU2   4340000 perm   7097 sec   (612 perm/sec)   p_kst 4.253456e-04   p_cons 4.817855e-01   p_joint 1.705069e-04

Joint ci ratio: 1.438954e-01	ci left: 1.582999e-04	ci right 1.830631e-04	k: 741	n:4350000
Cons ci ratio: 1.949244e-03	ci left: 4.813193e-01	ci right 4.822586e-01	k: 2095782	n:4350000
KS ci ratio: 9.111876e-02	ci left: 4.059056e-04	ci right 4.448793e-04	k: 1849	n:4350000
NEU2   4350000 perm   7128 sec   (610 perm/sec)   p_kst 4.250575e-04   p_cons 4.817890e-01   p_joint 1.703448e-04

Joint ci ratio: 1.437019e-01	ci left: 1.583791e-04	ci right 1.831184e-04	k: 743	n:4360000
Cons ci ratio: 1.946993e-03	ci left: 4.813235e-01	ci right 4.822618e-01	k: 2100616	n:4360000
KS ci ratio: 9.102041e-02	ci left: 4.058712e-04	ci right 4.447973e-04	k: 1853	n:4360000
NEU2   4360000 perm   7160 sec   (609 perm/sec)   p_kst 4.250000e-04   p_cons 4.817927e-01   p_joint 1.704128e-04

Joint ci ratio: 1.435091e-01	ci left: 1.584579e-04	ci right 1.831735e-04	k: 745	n:4370000
Cons ci ratio: 1.944793e-03	ci left: 4.813165e-01	ci right 4.822537e-01	k: 2105401	n:4370000
KS ci ratio: 9.089792e-02	ci left: 4.060605e-04	ci right 4.449496e-04	k: 1858	n:4370000
NEU2   4370000 perm   7191 sec   (608 perm/sec)   p_kst 4.251716e-04   p_cons 4.817851e-01   p_joint 1.704805e-04

Joint ci ratio: 1.434131e-01	ci left: 1.583162e-04	ci right 1.829918e-04	k: 746	n:4380000
Cons ci ratio: 1.942644e-03	ci left: 4.812986e-01	ci right 4.822347e-01	k: 2110138	n:4380000
KS ci ratio: 9.080028e-02	ci left: 4.060260e-04	ci right 4.448678e-04	k: 1862	n:4380000
NEU2   4380000 perm   7222 sec   (606 perm/sec)   p_kst 4.251142e-04   p_cons 4.817667e-01   p_joint 1.703196e-04

Joint ci ratio: 1.431259e-01	ci left: 1.586144e-04	ci right 1.832828e-04	k: 749	n:4390000
Cons ci ratio: 1.940470e-03	ci left: 4.812888e-01	ci right 4.822238e-01	k: 2114910	n:4390000
KS ci ratio: 9.063015e-02	ci left: 4.066594e-04	ci right 4.454851e-04	k: 1869	n:4390000
NEU2   4390000 perm   7253 sec   (605 perm/sec)   p_kst 4.257403e-04   p_cons 4.817563e-01   p_joint 1.706150e-04

Joint ci ratio: 1.431259e-01	ci left: 1.582540e-04	ci right 1.828663e-04	k: 749	n:4400000
Cons ci ratio: 1.938210e-03	ci left: 4.813032e-01	ci right 4.822372e-01	k: 2119789	n:4400000
KS ci ratio: 9.058175e-02	ci left: 4.061794e-04	ci right 4.449375e-04	k: 1871	n:4400000
NEU2   4400000 perm   7285 sec   (604 perm/sec)   p_kst 4.252273e-04   p_cons 4.817702e-01   p_joint 1.702273e-04

Joint ci ratio: 1.430306e-01	ci left: 1.581137e-04	ci right 1.826865e-04	k: 750	n:4410000
Cons ci ratio: 1.936038e-03	ci left: 4.812968e-01	ci right 4.822297e-01	k: 2124576	n:4410000
KS ci ratio: 9.048513e-02	ci left: 4.061449e-04	ci right 4.448561e-04	k: 1875	n:4410000
NEU2   4410000 perm   7316 sec   (603 perm/sec)   p_kst 4.251701e-04   p_cons 4.817633e-01   p_joint 1.700680e-04

Joint ci ratio: 1.429355e-01	ci left: 1.579742e-04	ci right 1.825075e-04	k: 751	n:4420000
Cons ci ratio: 1.933791e-03	ci left: 4.813117e-01	ci right 4.822435e-01	k: 2129457	n:4420000
KS ci ratio: 9.041288e-02	ci left: 4.058894e-04	ci right 4.445437e-04	k: 1878	n:4420000
NEU2   4420000 perm   7348 sec   (602 perm/sec)   p_kst 4.248869e-04   p_cons 4.817776e-01   p_joint 1.699095e-04

Joint ci ratio: 1.428406e-01	ci left: 1.578352e-04	ci right 1.823293e-04	k: 752	n:4430000
Cons ci ratio: 1.931640e-03	ci left: 4.813037e-01	ci right 4.822345e-01	k: 2134237	n:4430000
KS ci ratio: 9.034080e-02	ci left: 4.056351e-04	ci right 4.442327e-04	k: 1881	n:4430000
NEU2   4430000 perm   7380 sec   (600 perm/sec)   p_kst 4.246050e-04   p_cons 4.817691e-01   p_joint 1.697517e-04

Joint ci ratio: 1.426513e-01	ci left: 1.579141e-04	ci right 1.823852e-04	k: 754	n:4440000
Cons ci ratio: 1.929484e-03	ci left: 4.812991e-01	ci right 4.822289e-01	k: 2139032	n:4440000
KS ci ratio: 9.022103e-02	ci left: 4.058222e-04	ci right 4.443838e-04	k: 1886	n:4440000
NEU2   4440000 perm   7412 sec   (599 perm/sec)   p_kst 4.247748e-04   p_cons 4.817640e-01   p_joint 1.698198e-04

Joint ci ratio: 1.420877e-01	ci left: 1.588595e-04	ci right 1.833716e-04	k: 760	n:4450000
Cons ci ratio: 1.927239e-03	ci left: 4.813192e-01	ci right 4.822480e-01	k: 2143937	n:4450000
KS ci ratio: 8.995914e-02	ci left: 4.073264e-04	ci right 4.459127e-04	k: 1897	n:4450000
NEU2   4450000 perm   7444 sec   (598 perm/sec)   p_kst 4.262921e-04   p_cons 4.817836e-01   p_joint 1.707865e-04

Joint ci ratio: 1.419014e-01	ci left: 1.589359e-04	ci right 1.834248e-04	k: 762	n:4460000
Cons ci ratio: 1.925134e-03	ci left: 4.813050e-01	ci right 4.822327e-01	k: 2148689	n:4460000
KS ci ratio: 8.984087e-02	ci left: 4.075090e-04	ci right 4.460592e-04	k: 1902	n:4460000
NEU2   4460000 perm   7476 sec   (597 perm/sec)   p_kst 4.264574e-04   p_cons 4.817688e-01   p_joint 1.708520e-04

Joint ci ratio: 1.417158e-01	ci left: 1.590118e-04	ci right 1.834778e-04	k: 764	n:4470000
Cons ci ratio: 1.923003e-03	ci left: 4.812993e-01	ci right 4.822260e-01	k: 2153479	n:4470000
KS ci ratio: 8.974660e-02	ci left: 4.074721e-04	ci right 4.459762e-04	k: 1906	n:4470000
NEU2   4470000 perm   7508 sec   (595 perm/sec)   p_kst 4.263982e-04   p_cons 4.817626e-01   p_joint 1.709172e-04

Joint ci ratio: 1.415309e-01	ci left: 1.590875e-04	ci right 1.835305e-04	k: 766	n:4480000
Cons ci ratio: 1.920893e-03	ci left: 4.812901e-01	ci right 4.822157e-01	k: 2158253	n:4480000
KS ci ratio: 8.962917e-02	ci left: 4.076536e-04	ci right 4.461218e-04	k: 1911	n:4480000
NEU2   4480000 perm   7540 sec   (594 perm/sec)   p_kst 4.265625e-04   p_cons 4.817529e-01   p_joint 1.709821e-04

Joint ci ratio: 1.412549e-01	ci left: 1.593777e-04	ci right 1.838135e-04	k: 769	n:4490000
Cons ci ratio: 1.918696e-03	ci left: 4.813054e-01	ci right 4.822300e-01	k: 2163137	n:4490000
KS ci ratio: 8.948885e-02	ci left: 4.080521e-04	ci right 4.464945e-04	k: 1917	n:4490000
NEU2   4490000 perm   7573 sec   (593 perm/sec)   p_kst 4.269488e-04   p_cons 4.817677e-01   p_joint 1.712695e-04

Joint ci ratio: 1.411632e-01	ci left: 1.592379e-04	ci right 1.836351e-04	k: 770	n:4500000
Cons ci ratio: 1.916510e-03	ci left: 4.813196e-01	ci right 4.822431e-01	k: 2168016	n:4500000
KS ci ratio: 8.944225e-02	ci left: 4.075798e-04	ci right 4.459567e-04	k: 1919	n:4500000
NEU2   4500000 perm   7605 sec   (592 perm/sec)   p_kst 4.264444e-04   p_cons 4.817813e-01   p_joint 1.711111e-04

Joint ci ratio: 1.411633e-01	ci left: 1.588848e-04	ci right 1.832279e-04	k: 770	n:4510000
Cons ci ratio: 1.914350e-03	ci left: 4.813290e-01	ci right 4.822515e-01	k: 2172874	n:4510000
KS ci ratio: 8.941900e-02	ci left: 4.068929e-04	ci right 4.451945e-04	k: 1920	n:4510000
NEU2   4510000 perm   7637 sec   (591 perm/sec)   p_kst 4.257206e-04   p_cons 4.817902e-01   p_joint 1.707317e-04

Joint ci ratio: 1.407985e-01	ci left: 1.593871e-04	ci right 1.837387e-04	k: 774	n:4520000
Cons ci ratio: 1.912247e-03	ci left: 4.813255e-01	ci right 4.822470e-01	k: 2177674	n:4520000
KS ci ratio: 8.923335e-02	ci left: 4.077230e-04	ci right 4.460190e-04	k: 1928	n:4520000
NEU2   4520000 perm   7670 sec   (589 perm/sec)   p_kst 4.265487e-04   p_cons 4.817863e-01   p_joint 1.712389e-04

Joint ci ratio: 1.407985e-01	ci left: 1.590352e-04	ci right 1.833331e-04	k: 774	n:4530000
Cons ci ratio: 1.910105e-03	ci left: 4.813338e-01	ci right 4.822543e-01	k: 2182527	n:4530000
KS ci ratio: 8.921027e-02	ci left: 4.070388e-04	ci right 4.452601e-04	k: 1929	n:4530000
NEU2   4530000 perm   7702 sec   (588 perm/sec)   p_kst 4.258278e-04   p_cons 4.817940e-01   p_joint 1.708609e-04

Joint ci ratio: 1.407985e-01	ci left: 1.586849e-04	ci right 1.829293e-04	k: 774	n:4540000
Cons ci ratio: 1.908064e-03	ci left: 4.813176e-01	ci right 4.822371e-01	k: 2187269	n:4540000
KS ci ratio: 8.914102e-02	ci left: 4.067883e-04	ci right 4.449549e-04	k: 1932	n:4540000
NEU2   4540000 perm   7735 sec   (587 perm/sec)   p_kst 4.255507e-04   p_cons 4.817773e-01   p_joint 1.704846e-04

Joint ci ratio: 1.407078e-01	ci left: 1.585482e-04	ci right 1.827547e-04	k: 775	n:4550000
Cons ci ratio: 1.906012e-03	ci left: 4.813061e-01	ci right 4.822245e-01	k: 2192032	n:4550000
KS ci ratio: 8.909497e-02	ci left: 4.063240e-04	ci right 4.444263e-04	k: 1934	n:4550000
NEU2   4550000 perm   7767 sec   (586 perm/sec)   p_kst 4.250549e-04   p_cons 4.817653e-01   p_joint 1.703297e-04

Joint ci ratio: 1.406172e-01	ci left: 1.584121e-04	ci right 1.825810e-04	k: 776	n:4560000
Cons ci ratio: 1.903878e-03	ci left: 4.813180e-01	ci right 4.822355e-01	k: 2196902	n:4560000
KS ci ratio: 8.902599e-02	ci left: 4.060762e-04	ci right 4.441242e-04	k: 1937	n:4560000
NEU2   4560000 perm   7800 sec   (585 perm/sec)   p_kst 4.247807e-04   p_cons 4.817768e-01   p_joint 1.701754e-04

Joint ci ratio: 1.405268e-01	ci left: 1.582766e-04	ci right 1.824079e-04	k: 777	n:4570000
Cons ci ratio: 1.901790e-03	ci left: 4.813195e-01	ci right 4.822359e-01	k: 2201724	n:4570000
KS ci ratio: 8.895718e-02	ci left: 4.058295e-04	ci right 4.438235e-04	k: 1940	n:4570000
NEU2   4570000 perm   7833 sec   (583 perm/sec)   p_kst 4.245077e-04   p_cons 4.817777e-01   p_joint 1.700219e-04

Joint ci ratio: 1.405269e-01	ci left: 1.579310e-04	ci right 1.820097e-04	k: 777	n:4580000
Cons ci ratio: 1.899748e-03	ci left: 4.813106e-01	ci right 4.822261e-01	k: 2206499	n:4580000
KS ci ratio: 8.893430e-02	ci left: 4.051569e-04	ci right 4.430776e-04	k: 1941	n:4580000
NEU2   4580000 perm   7867 sec   (582 perm/sec)   p_kst 4.237991e-04   p_cons 4.817683e-01   p_joint 1.696507e-04

Joint ci ratio: 1.405269e-01	ci left: 1.575869e-04	ci right 1.816131e-04	k: 777	n:4590000
Cons ci ratio: 1.897691e-03	ci left: 4.813077e-01	ci right 4.822222e-01	k: 2211301	n:4590000
KS ci ratio: 8.891145e-02	ci left: 4.044872e-04	ci right 4.423350e-04	k: 1942	n:4590000
NEU2   4590000 perm   7899 sec   (581 perm/sec)   p_kst 4.230937e-04   p_cons 4.817649e-01   p_joint 1.692810e-04

Joint ci ratio: 1.401670e-01	ci left: 1.580834e-04	ci right 1.821184e-04	k: 781	n:4600000
Cons ci ratio: 1.895601e-03	ci left: 4.813150e-01	ci right 4.822285e-01	k: 2216150	n:4600000
KS ci ratio: 8.879726e-02	ci left: 4.046707e-04	ci right 4.424845e-04	k: 1947	n:4600000
NEU2   4600000 perm   7932 sec   (580 perm/sec)   p_kst 4.232609e-04   p_cons 4.817717e-01   p_joint 1.697826e-04

Joint ci ratio: 1.398989e-01	ci left: 1.583684e-04	ci right 1.823969e-04	k: 784	n:4610000
Cons ci ratio: 1.893627e-03	ci left: 4.812935e-01	ci right 4.822059e-01	k: 2220866	n:4610000
KS ci ratio: 8.870624e-02	ci left: 4.046413e-04	ci right 4.424116e-04	k: 1951	n:4610000
NEU2   4610000 perm   7965 sec   (579 perm/sec)   p_kst 4.232104e-04   p_cons 4.817497e-01   p_joint 1.700651e-04

Joint ci ratio: 1.397210e-01	ci left: 1.584434e-04	ci right 1.824501e-04	k: 786	n:4620000
Cons ci ratio: 1.891539e-03	ci left: 4.813040e-01	ci right 4.822155e-01	k: 2225730	n:4620000
KS ci ratio: 8.854758e-02	ci left: 4.052470e-04	ci right 4.430028e-04	k: 1958	n:4620000
NEU2   4620000 perm   7998 sec   (578 perm/sec)   p_kst 4.238095e-04   p_cons 4.817597e-01   p_joint 1.701299e-04

Joint ci ratio: 1.394554e-01	ci left: 1.587265e-04	ci right 1.827266e-04	k: 789	n:4630000
Cons ci ratio: 1.889461e-03	ci left: 4.813135e-01	ci right 4.822239e-01	k: 2230589	n:4630000
KS ci ratio: 8.838978e-02	ci left: 4.058502e-04	ci right 4.435913e-04	k: 1965	n:4630000
NEU2   4630000 perm   8032 sec   (576 perm/sec)   p_kst 4.244060e-04   p_cons 4.817687e-01   p_joint 1.704104e-04

Joint ci ratio: 1.392792e-01	ci left: 1.588004e-04	ci right 1.827789e-04	k: 791	n:4640000
Cons ci ratio: 1.887428e-03	ci left: 4.813129e-01	ci right 4.822224e-01	k: 2235402	n:4640000
KS ci ratio: 8.830000e-02	ci left: 4.058185e-04	ci right 4.435164e-04	k: 1969	n:4640000
NEU2   4640000 perm   8065 sec   (575 perm/sec)   p_kst 4.243534e-04   p_cons 4.817677e-01   p_joint 1.704741e-04

Joint ci ratio: 1.391914e-01	ci left: 1.586665e-04	ci right 1.826084e-04	k: 792	n:4650000
Cons ci ratio: 1.885381e-03	ci left: 4.813178e-01	ci right 4.822263e-01	k: 2240240	n:4650000
KS ci ratio: 8.821049e-02	ci left: 4.057870e-04	ci right 4.434418e-04	k: 1973	n:4650000
NEU2   4650000 perm   8098 sec   (574 perm/sec)   p_kst 4.243011e-04   p_cons 4.817720e-01   p_joint 1.703226e-04

Joint ci ratio: 1.391037e-01	ci left: 1.585331e-04	ci right 1.824385e-04	k: 793	n:4660000
Cons ci ratio: 1.883300e-03	ci left: 4.813334e-01	ci right 4.822409e-01	k: 2245128	n:4660000
KS ci ratio: 8.816586e-02	ci left: 4.053360e-04	ci right 4.429288e-04	k: 1975	n:4660000
NEU2   4660000 perm   8132 sec   (573 perm/sec)   p_kst 4.238197e-04   p_cons 4.817871e-01   p_joint 1.701717e-04

Joint ci ratio: 1.391038e-01	ci left: 1.581936e-04	ci right 1.820479e-04	k: 793	n:4670000
Cons ci ratio: 1.881361e-03	ci left: 4.813129e-01	ci right 4.822195e-01	k: 2249848	n:4670000
KS ci ratio: 8.812130e-02	ci left: 4.048868e-04	ci right 4.424181e-04	k: 1977	n:4670000
NEU2   4670000 perm   8165 sec   (572 perm/sec)   p_kst 4.233405e-04   p_cons 4.817662e-01   p_joint 1.698073e-04

Joint ci ratio: 1.391038e-01	ci left: 1.578556e-04	ci right 1.816589e-04	k: 793	n:4680000
Cons ci ratio: 1.879410e-03	ci left: 4.812974e-01	ci right 4.822030e-01	k: 2254591	n:4680000
KS ci ratio: 8.807680e-02	ci left: 4.044396e-04	ci right 4.419095e-04	k: 1979	n:4680000
NEU2   4680000 perm   8199 sec   (571 perm/sec)   p_kst 4.228632e-04   p_cons 4.817502e-01   p_joint 1.694444e-04

Joint ci ratio: 1.389289e-01	ci left: 1.579306e-04	ci right 1.817128e-04	k: 795	n:4690000
Cons ci ratio: 1.877409e-03	ci left: 4.812969e-01	ci right 4.822016e-01	k: 2259404	n:4690000
KS ci ratio: 8.798797e-02	ci left: 4.044114e-04	ci right 4.418389e-04	k: 1983	n:4690000
NEU2   4690000 perm   8232 sec   (570 perm/sec)   p_kst 4.228145e-04   p_cons 4.817493e-01   p_joint 1.695096e-04

Joint ci ratio: 1.389289e-01	ci left: 1.575946e-04	ci right 1.813262e-04	k: 795	n:4700000
Cons ci ratio: 1.875332e-03	ci left: 4.813184e-01	ci right 4.822221e-01	k: 2264320	n:4700000
KS ci ratio: 8.787730e-02	ci left: 4.045914e-04	ci right 4.419860e-04	k: 1988	n:4700000
NEU2   4700000 perm   8265 sec   (569 perm/sec)   p_kst 4.229787e-04   p_cons 4.817702e-01   p_joint 1.691489e-04

Joint ci ratio: 1.387547e-01	ci left: 1.576699e-04	ci right 1.813806e-04	k: 797	n:4710000
Cons ci ratio: 1.873295e-03	ci left: 4.813308e-01	ci right 4.822335e-01	k: 2269194	n:4710000
KS ci ratio: 8.778907e-02	ci left: 4.045630e-04	ci right 4.419155e-04	k: 1992	n:4710000
NEU2   4710000 perm   8299 sec   (568 perm/sec)   p_kst 4.229299e-04   p_cons 4.817822e-01   p_joint 1.692144e-04

Joint ci ratio: 1.386679e-01	ci left: 1.575404e-04	ci right 1.812155e-04	k: 798	n:4720000
Cons ci ratio: 1.871383e-03	ci left: 4.813118e-01	ci right 4.822136e-01	k: 2273920	n:4720000
KS ci ratio: 8.770111e-02	ci left: 4.045347e-04	ci right 4.418453e-04	k: 1996	n:4720000
NEU2   4720000 perm   8332 sec   (566 perm/sec)   p_kst 4.228814e-04   p_cons 4.817627e-01   p_joint 1.690678e-04

Joint ci ratio: 1.382360e-01	ci left: 1.582278e-04	ci right 1.819261e-04	k: 803	n:4730000
Cons ci ratio: 1.869372e-03	ci left: 4.813209e-01	ci right 4.822217e-01	k: 2278778	n:4730000
KS ci ratio: 8.750411e-02	ci left: 4.055405e-04	ci right 4.428556e-04	k: 2005	n:4730000
NEU2   4730000 perm   8366 sec   (565 perm/sec)   p_kst 4.238901e-04   p_cons 4.817712e-01   p_joint 1.697674e-04

Joint ci ratio: 1.381501e-01	ci left: 1.580976e-04	ci right 1.817605e-04	k: 804	n:4740000
Cons ci ratio: 1.867420e-03	ci left: 4.813157e-01	ci right 4.822155e-01	k: 2283569	n:4740000
KS ci ratio: 8.743876e-02	ci left: 4.053040e-04	ci right 4.425681e-04	k: 2008	n:4740000
NEU2   4740000 perm   8399 sec   (564 perm/sec)   p_kst 4.236287e-04   p_cons 4.817656e-01   p_joint 1.696203e-04

Joint ci ratio: 1.378934e-01	ci left: 1.583746e-04	ci right 1.820312e-04	k: 807	n:4750000
Cons ci ratio: 1.865444e-03	ci left: 4.813186e-01	ci right 4.822175e-01	k: 2288398	n:4750000
KS ci ratio: 8.728680e-02	ci left: 4.058922e-04	ci right 4.431422e-04	k: 2015	n:4750000
NEU2   4750000 perm   8433 sec   (563 perm/sec)   p_kst 4.242105e-04   p_cons 4.817680e-01   p_joint 1.698947e-04

Joint ci ratio: 1.378081e-01	ci left: 1.582447e-04	ci right 1.818662e-04	k: 808	n:4760000
Cons ci ratio: 1.863439e-03	ci left: 4.813311e-01	ci right 4.822290e-01	k: 2293273	n:4760000
KS ci ratio: 8.722194e-02	ci left: 4.056560e-04	ci right 4.428552e-04	k: 2018	n:4760000
NEU2   4760000 perm   8468 sec   (562 perm/sec)   p_kst 4.239496e-04   p_cons 4.817800e-01   p_joint 1.697479e-04

Joint ci ratio: 1.377231e-01	ci left: 1.581154e-04	ci right 1.817017e-04	k: 809	n:4770000
Cons ci ratio: 1.861502e-03	ci left: 4.813268e-01	ci right 4.822238e-01	k: 2298068	n:4770000
KS ci ratio: 8.715722e-02	ci left: 4.054208e-04	ci right 4.425695e-04	k: 2021	n:4770000
NEU2   4770000 perm   8502 sec   (561 perm/sec)   p_kst 4.236897e-04   p_cons 4.817753e-01   p_joint 1.696017e-04

Joint ci ratio: 1.377231e-01	ci left: 1.577846e-04	ci right 1.813216e-04	k: 809	n:4780000
Cons ci ratio: 1.859506e-03	ci left: 4.813400e-01	ci right 4.822361e-01	k: 2302947	n:4780000
KS ci ratio: 8.707114e-02	ci left: 4.053912e-04	ci right 4.424986e-04	k: 2025	n:4780000
NEU2   4780000 perm   8536 sec   (560 perm/sec)   p_kst 4.236402e-04   p_cons 4.817881e-01   p_joint 1.692469e-04

Joint ci ratio: 1.374687e-01	ci left: 1.580599e-04	ci right 1.815909e-04	k: 812	n:4790000
Cons ci ratio: 1.857521e-03	ci left: 4.813520e-01	ci right 4.822472e-01	k: 2307820	n:4790000
KS ci ratio: 8.694248e-02	ci left: 4.057703e-04	ci right 4.428547e-04	k: 2031	n:4790000
NEU2   4790000 perm   8570 sec   (559 perm/sec)   p_kst 4.240084e-04   p_cons 4.817996e-01   p_joint 1.695198e-04

Joint ci ratio: 1.372158e-01	ci left: 1.583341e-04	ci right 1.818591e-04	k: 815	n:4800000
Cons ci ratio: 1.855551e-03	ci left: 4.813617e-01	ci right 4.822559e-01	k: 2312682	n:4800000
KS ci ratio: 8.685704e-02	ci left: 4.057401e-04	ci right 4.427835e-04	k: 2035	n:4800000
NEU2   4800000 perm   8604 sec   (558 perm/sec)   p_kst 4.239583e-04   p_cons 4.818088e-01   p_joint 1.697917e-04

Joint ci ratio: 1.370479e-01	ci left: 1.584065e-04	ci right 1.819110e-04	k: 817	n:4810000
Cons ci ratio: 1.853579e-03	ci left: 4.813735e-01	ci right 4.822668e-01	k: 2317555	n:4810000
KS ci ratio: 8.675057e-02	ci left: 4.059135e-04	ci right 4.429250e-04	k: 2040	n:4810000
NEU2   4810000 perm   8639 sec   (557 perm/sec)   p_kst 4.241164e-04   p_cons 4.818202e-01   p_joint 1.698545e-04

Joint ci ratio: 1.369642e-01	ci left: 1.582782e-04	ci right 1.817482e-04	k: 818	n:4820000
Cons ci ratio: 1.851677e-03	ci left: 4.813681e-01	ci right 4.822605e-01	k: 2322345	n:4820000
KS ci ratio: 8.668690e-02	ci left: 4.056803e-04	ci right 4.426420e-04	k: 2043	n:4820000
NEU2   4820000 perm   8673 sec   (556 perm/sec)   p_kst 4.238589e-04   p_cons 4.818143e-01   p_joint 1.697095e-04

Joint ci ratio: 1.367973e-01	ci left: 1.583504e-04	ci right 1.818002e-04	k: 820	n:4830000
Cons ci ratio: 1.849692e-03	ci left: 4.813868e-01	ci right 4.822782e-01	k: 2327251	n:4830000
KS ci ratio: 8.658106e-02	ci left: 4.058531e-04	ci right 4.427832e-04	k: 2048	n:4830000
NEU2   4830000 perm   8708 sec   (555 perm/sec)   p_kst 4.240166e-04   p_cons 4.818325e-01   p_joint 1.697723e-04

Joint ci ratio: 1.367141e-01	ci left: 1.582228e-04	ci right 1.816382e-04	k: 821	n:4840000
Cons ci ratio: 1.847749e-03	ci left: 4.813957e-01	ci right 4.822862e-01	k: 2332110	n:4840000
KS ci ratio: 8.649668e-02	ci left: 4.058232e-04	ci right 4.427127e-04	k: 2052	n:4840000
NEU2   4840000 perm   8743 sec   (554 perm/sec)   p_kst 4.239669e-04   p_cons 4.818409e-01   p_joint 1.696281e-04

Joint ci ratio: 1.366310e-01	ci left: 1.580957e-04	ci right 1.814769e-04	k: 822	n:4850000
Cons ci ratio: 1.845806e-03	ci left: 4.814061e-01	ci right 4.822957e-01	k: 2336977	n:4850000
KS ci ratio: 8.637054e-02	ci left: 4.061968e-04	ci right 4.430637e-04	k: 2058	n:4850000
NEU2   4850000 perm   8777 sec   (553 perm/sec)   p_kst 4.243299e-04   p_cons 4.818509e-01   p_joint 1.694845e-04

Joint ci ratio: 1.364653e-01	ci left: 1.581679e-04	ci right 1.815291e-04	k: 824	n:4860000
Cons ci ratio: 1.843884e-03	ci left: 4.814127e-01	ci right 4.823013e-01	k: 2341825	n:4860000
KS ci ratio: 8.630770e-02	ci left: 4.059650e-04	ci right 4.427827e-04	k: 2061	n:4860000
NEU2   4860000 perm   8812 sec   (552 perm/sec)   p_kst 4.240741e-04   p_cons 4.818570e-01   p_joint 1.695473e-04

Joint ci ratio: 1.363827e-01	ci left: 1.580414e-04	ci right 1.813687e-04	k: 825	n:4870000
Cons ci ratio: 1.841967e-03	ci left: 4.814192e-01	ci right 4.823069e-01	k: 2346673	n:4870000
KS ci ratio: 8.620324e-02	ci left: 4.061359e-04	ci right 4.429223e-04	k: 2066	n:4870000
NEU2   4870000 perm   8847 sec   (550 perm/sec)   p_kst 4.242300e-04   p_cons 4.818630e-01   p_joint 1.694045e-04

Joint ci ratio: 1.362178e-01	ci left: 1.581134e-04	ci right 1.814208e-04	k: 827	n:4880000
Cons ci ratio: 1.840120e-03	ci left: 4.814086e-01	ci right 4.822955e-01	k: 2351438	n:4880000
KS ci ratio: 8.609916e-02	ci left: 4.063062e-04	ci right 4.430613e-04	k: 2071	n:4880000
NEU2   4880000 perm   8882 sec   (549 perm/sec)   p_kst 4.243852e-04   p_cons 4.818520e-01   p_joint 1.694672e-04

Joint ci ratio: 1.362179e-01	ci left: 1.577901e-04	ci right 1.810498e-04	k: 827	n:4890000
Cons ci ratio: 1.838207e-03	ci left: 4.814174e-01	ci right 4.823033e-01	k: 2356297	n:4890000
KS ci ratio: 8.603691e-02	ci left: 4.060756e-04	ci right 4.427820e-04	k: 2074	n:4890000
NEU2   4890000 perm   8916 sec   (548 perm/sec)   p_kst 4.241309e-04   p_cons 4.818603e-01   p_joint 1.691207e-04

Joint ci ratio: 1.359717e-01	ci left: 1.580595e-04	ci right 1.813134e-04	k: 830	n:4900000
Cons ci ratio: 1.836294e-03	ci left: 4.814277e-01	ci right 4.823127e-01	k: 2361164	n:4900000
KS ci ratio: 8.595411e-02	ci left: 4.060456e-04	ci right 4.427122e-04	k: 2078	n:4900000
NEU2   4900000 perm   8951 sec   (547 perm/sec)   p_kst 4.240816e-04   p_cons 4.818702e-01   p_joint 1.693878e-04

Joint ci ratio: 1.357270e-01	ci left: 1.583278e-04	ci right 1.815759e-04	k: 833	n:4910000
Cons ci ratio: 1.834392e-03	ci left: 4.814366e-01	ci right 4.823207e-01	k: 2366024	n:4910000
KS ci ratio: 8.587154e-02	ci left: 4.060158e-04	ci right 4.426427e-04	k: 2082	n:4910000
NEU2   4910000 perm   8986 sec   (546 perm/sec)   p_kst 4.240326e-04   p_cons 4.818786e-01   p_joint 1.696538e-04

Joint ci ratio: 1.355645e-01	ci left: 1.583987e-04	ci right 1.816271e-04	k: 835	n:4920000
Cons ci ratio: 1.832542e-03	ci left: 4.814328e-01	ci right 4.823160e-01	k: 2370822	n:4920000
KS ci ratio: 8.580978e-02	ci left: 4.057872e-04	ci right 4.423659e-04	k: 2085	n:4920000
NEU2   4920000 perm   9021 sec   (545 perm/sec)   p_kst 4.237805e-04   p_cons 4.818744e-01   p_joint 1.697154e-04

Joint ci ratio: 1.355645e-01	ci left: 1.580774e-04	ci right 1.812587e-04	k: 835	n:4930000
Cons ci ratio: 1.830700e-03	ci left: 4.814286e-01	ci right 4.823110e-01	k: 2375618	n:4930000
KS ci ratio: 8.574815e-02	ci left: 4.055596e-04	ci right 4.420901e-04	k: 2088	n:4930000
NEU2   4930000 perm   9056 sec   (544 perm/sec)   p_kst 4.235294e-04   p_cons 4.818698e-01   p_joint 1.693712e-04

Joint ci ratio: 1.355645e-01	ci left: 1.577574e-04	ci right 1.808918e-04	k: 835	n:4940000
Cons ci ratio: 1.828844e-03	ci left: 4.814295e-01	ci right 4.823110e-01	k: 2380439	n:4940000
KS ci ratio: 8.572766e-02	ci left: 4.049367e-04	ci right 4.414020e-04	k: 2089	n:4940000
NEU2   4940000 perm   9091 sec   (543 perm/sec)   p_kst 4.228745e-04   p_cons 4.818702e-01   p_joint 1.690283e-04

Joint ci ratio: 1.354836e-01	ci left: 1.576339e-04	ci right 1.807352e-04	k: 836	n:4950000
Cons ci ratio: 1.827019e-03	ci left: 4.814236e-01	ci right 4.823041e-01	k: 2385226	n:4950000
KS ci ratio: 8.564575e-02	ci left: 4.049094e-04	ci right 4.413357e-04	k: 2093	n:4950000
NEU2   4950000 perm   9127 sec   (542 perm/sec)   p_kst 4.228283e-04   p_cons 4.818638e-01   p_joint 1.688889e-04

Joint ci ratio: 1.353220e-01	ci left: 1.577056e-04	ci right 1.807877e-04	k: 838	n:4960000
Cons ci ratio: 1.825182e-03	ci left: 4.814225e-01	ci right 4.823021e-01	k: 2390037	n:4960000
KS ci ratio: 8.550293e-02	ci left: 4.054742e-04	ci right 4.418874e-04	k: 2100	n:4960000
NEU2   4960000 perm   9163 sec   (541 perm/sec)   p_kst 4.233871e-04   p_cons 4.818623e-01   p_joint 1.689516e-04

Joint ci ratio: 1.351610e-01	ci left: 1.577771e-04	ci right 1.808400e-04	k: 840	n:4970000
Cons ci ratio: 1.823361e-03	ci left: 4.814186e-01	ci right 4.822974e-01	k: 2394834	n:4970000
KS ci ratio: 8.532034e-02	ci left: 4.064305e-04	ci right 4.428478e-04	k: 2109	n:4970000
NEU2   4970000 perm   9198 sec   (540 perm/sec)   p_kst 4.243461e-04   p_cons 4.818579e-01   p_joint 1.690141e-04

Joint ci ratio: 1.349205e-01	ci left: 1.580423e-04	ci right 1.810996e-04	k: 843	n:4980000
Cons ci ratio: 1.821527e-03	ci left: 4.814197e-01	ci right 4.822976e-01	k: 2399656	n:4980000
KS ci ratio: 8.513892e-02	ci left: 4.073831e-04	ci right 4.438042e-04	k: 2118	n:4980000
NEU2   4980000 perm   9233 sec   (539 perm/sec)   p_kst 4.253012e-04   p_cons 4.818586e-01   p_joint 1.692771e-04

Joint ci ratio: 1.348407e-01	ci left: 1.579193e-04	ci right 1.809438e-04	k: 844	n:4990000
Cons ci ratio: 1.819703e-03	ci left: 4.814194e-01	ci right 4.822964e-01	k: 2404471	n:4990000
KS ci ratio: 8.505868e-02	ci left: 4.073513e-04	ci right 4.437335e-04	k: 2122	n:4990000
NEU2   4990000 perm   9269 sec   (538 perm/sec)   p_kst 4.252505e-04   p_cons 4.818579e-01   p_joint 1.691383e-04

Joint ci ratio: 1.346814e-01	ci left: 1.579899e-04	ci right 1.809954e-04	k: 846	n:5000000
Cons ci ratio: 1.817919e-03	ci left: 4.814099e-01	ci right 4.822861e-01	k: 2409240	n:5000000
KS ci ratio: 8.499865e-02	ci left: 4.071238e-04	ci right 4.434588e-04	k: 2125	n:5000000
NEU2   5000000 perm   9305 sec   (537 perm/sec)   p_kst 4.250000e-04   p_cons 4.818480e-01   p_joint 1.692000e-04

Outputting figure to mutsig2_images.part000000000114/NEU2.2_1150_5000000_0.000425_0.48185_0.0001692.png
                gene_name: NEU2
               theta_stop: 0.13 
                    nperm: 5000000 
                     p_ks: 0.00042 
        ci_ks_bounds_left: 0.00041 
       ci_ks_bounds_right: 0.00044 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.00017 
     ci_joint_bounds_left: 0.00016 
    ci_joint_bounds_right: 0.00018 

Current progress: 57 percent done.
NEU4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.462640e-02	ci left: 7.080589e-01	ci right 7.258146e-01	k: 7170	n:10000
KS ci ratio: 5.230335e-03	ci left: 9.798420e-01	ci right 9.850715e-01	k: 9826	n:10000
NEU4   10000 perm   1 sec   (7546 perm/sec)   p_kst 9.826000e-01   p_cons 7.170000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000114/NEU4.2_1510_10000_0.9826_0.717_1.png
                gene_name: NEU4
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 59 percent done.
NEURL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.225711e-02	ci left: 5.865064e-01	ci right 6.058375e-01	k: 5962	n:10000
KS ci ratio: 1.538251e-02	ci left: 8.597792e-01	ci right 8.732065e-01	k: 8666	n:10000
NEURL2   10000 perm   1 sec   (7859 perm/sec)   p_kst 8.666000e-01   p_cons 5.962000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000114/NEURL2.2_866_10000_0.8666_0.5962_1.png
                gene_name: NEURL2
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 61 percent done.
NEUROD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.134314e-02	ci left: 9.173946e-01	ci right 9.279576e-01	k: 9228	n:10000
Cons ci ratio: 3.959588e-02	ci left: 4.850534e-01	ci right 5.047496e-01	k: 4949	n:10000
KS ci ratio: 1.629514e-01	ci left: 5.022725e-02	ci right 5.923435e-02	k: 546	n:10000
NEUROD1   10000 perm   1 sec   (8065 perm/sec)   p_kst 5.460000e-02   p_cons 4.949000e-01   p_joint 9.228000e-01

Joint ci ratio: 8.568830e-03	ci left: 9.088047e-01	ci right 9.166748e-01	k: 18256	n:20000
Cons ci ratio: 2.756174e-02	ci left: 4.958456e-01	ci right 5.097536e-01	k: 10056	n:20000
KS ci ratio: 1.196283e-01	ci left: 4.789434e-02	ci right 5.403704e-02	k: 1018	n:20000
NEUROD1   20000 perm   3 sec   (7029 perm/sec)   p_kst 5.090000e-02   p_cons 5.028000e-01   p_joint 9.128000e-01

Joint ci ratio: 7.697510e-03	ci left: 8.928288e-01	ci right 8.997609e-01	k: 26890	n:30000
Cons ci ratio: 2.241329e-02	ci left: 4.991588e-01	ci right 5.105070e-01	k: 15145	n:30000
KS ci ratio: 9.762634e-02	ci left: 4.850489e-02	ci right 5.351585e-02	k: 1529	n:30000
NEUROD1   30000 perm   5 sec   (6634 perm/sec)   p_kst 5.096667e-02   p_cons 5.048333e-01   p_joint 8.963333e-01

Outputting figure to mutsig2_images.part000000000114/NEUROD1.2_1075_30000_0.050967_0.50483_0.89633.png
                gene_name: NEUROD1
               theta_stop: 0.098 
                    nperm: 30000 
                     p_ks: 0.051 
        ci_ks_bounds_left: 0.049 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 63 percent done.
NEUROG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.307477e-02	ci left: 1.744810e-01	ci right 1.897046e-01	k: 1820	n:10000
Cons ci ratio: 1.690887e-01	ci left: 4.667345e-02	ci right 5.539046e-02	k: 509	n:10000
KS ci ratio: 1.173349e-01	ci left: 9.447929e-02	ci right 1.063546e-01	k: 1003	n:10000
NEUROG2   10000 perm   1 sec   (7963 perm/sec)   p_kst 1.003000e-01   p_cons 5.090000e-02   p_joint 1.820000e-01

Joint ci ratio: 5.223264e-03	ci left: 9.631358e-01	ci right 9.682277e-01	k: 19315	n:20000
Cons ci ratio: 1.163560e-01	ci left: 5.056727e-02	ci right 5.686327e-02	k: 1073	n:20000
KS ci ratio: 8.508172e-02	ci left: 9.185310e-02	ci right 1.000648e-01	k: 1918	n:20000
NEUROG2   20000 perm   3 sec   (6923 perm/sec)   p_kst 9.590000e-02   p_cons 5.365000e-02   p_joint 9.657500e-01

Joint ci ratio: 4.234822e-03	ci left: 9.640927e-01	ci right 9.682164e-01	k: 28986	n:30000
Cons ci ratio: 9.472568e-02	ci left: 5.143645e-02	ci right 5.658368e-02	k: 1619	n:30000
KS ci ratio: 6.965019e-02	ci left: 9.216402e-02	ci right 9.884788e-02	k: 2864	n:30000
NEUROG2   30000 perm   5 sec   (6546 perm/sec)   p_kst 9.546667e-02   p_cons 5.396667e-02   p_joint 9.662000e-01

Outputting figure to mutsig2_images.part000000000114/NEUROG2.2_823_30000_0.095467_0.053967_0.9662.png
                gene_name: NEUROG2
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.095 
        ci_ks_bounds_left: 0.092 
       ci_ks_bounds_right: 0.099 
                   p_cons: 0.054 
      ci_cons_bounds_left: 0.051 
     ci_cons_bounds_right: 0.057 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 65 percent done.
NEXN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.074355e-02	ci left: 9.250294e-01	ci right 9.351183e-01	k: 9302	n:10000
Cons ci ratio: 3.755887e-02	ci left: 5.114541e-01	ci right 5.311335e-01	k: 5213	n:10000
KS ci ratio: 3.386300e-02	ci left: 5.628341e-01	ci right 5.823236e-01	k: 5726	n:10000
NEXN   10000 perm   1 sec   (7120 perm/sec)   p_kst 5.726000e-01   p_cons 5.213000e-01   p_joint 9.302000e-01

Outputting figure to mutsig2_images.part000000000114/NEXN.2_2076_10000_0.5726_0.5213_0.9302.png
                gene_name: NEXN
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 67 percent done.
NF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.812426e-02	ci left: 8.162904e-01	ci right 8.313205e-01	k: 8239	n:10000
KS ci ratio: 1.409920e-02	ci left: 8.790966e-01	ci right 8.916780e-01	k: 8855	n:10000
NF2   10000 perm   1 sec   (7150 perm/sec)   p_kst 8.855000e-01   p_cons 8.239000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000114/NF2.2_1892_10000_0.8855_0.8239_1.png
                gene_name: NF2
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 69 percent done.
NFATC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.569174e-02	ci left: 3.219758e-01	ci right 3.405226e-01	k: 3312	n:10000
KS ci ratio: 2.347668e-02	ci left: 7.272426e-01	ci right 7.446198e-01	k: 7360	n:10000
NFATC4   10000 perm   1 sec   (6943 perm/sec)   p_kst 7.360000e-01   p_cons 3.312000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000114/NFATC4.2_3007_10000_0.736_0.3312_1.png
                gene_name: NFATC4
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
NFIC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.651309e-02	ci left: 6.769010e-01	ci right 6.951905e-01	k: 6861	n:10000
Cons ci ratio: 3.202320e-02	ci left: 5.900191e-01	ci right 6.093228e-01	k: 5997	n:10000
KS ci ratio: 5.694681e-02	ci left: 3.122498e-01	ci right 3.306543e-01	k: 3214	n:10000
NFIC   10000 perm   1 sec   (7739 perm/sec)   p_kst 3.214000e-01   p_cons 5.997000e-01   p_joint 6.861000e-01

Outputting figure to mutsig2_images.part000000000114/NFIC.2_1578_10000_0.3214_0.5997_0.6861.png
                gene_name: NFIC
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 73 percent done.
NFKB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.515559e-01	ci left: 5.793006e-02	ci right 6.752661e-02	k: 626	n:10000
KS ci ratio: 8.360851e-02	ci left: 1.726124e-01	ci right 1.877744e-01	k: 1801	n:10000
NFKB1   10000 perm   1 sec   (6683 perm/sec)   p_kst 1.801000e-01   p_cons 6.260000e-02   p_joint 1

Joint ci ratio: 3.945122e-02	ci left: 3.239311e-01	ci right 3.370182e-01	k: 6609	n:20000
Cons ci ratio: 1.059567e-01	ci left: 6.064653e-02	ci right 6.748089e-02	k: 1280	n:20000
KS ci ratio: 5.965671e-02	ci left: 1.722267e-01	ci right 1.828672e-01	k: 3550	n:20000
NFKB1   20000 perm   3 sec   (5927 perm/sec)   p_kst 1.775000e-01   p_cons 6.400000e-02   p_joint 3.304500e-01

Joint ci ratio: 2.877437e-02	ci left: 3.766631e-01	ci right 3.876931e-01	k: 11465	n:30000
Cons ci ratio: 8.657410e-02	ci left: 6.119075e-02	ci right 6.676073e-02	k: 1918	n:30000
KS ci ratio: 4.867363e-02	ci left: 1.734221e-01	ci right 1.821071e-01	k: 5332	n:30000
NFKB1   30000 perm   5 sec   (5644 perm/sec)   p_kst 1.777333e-01   p_cons 6.393333e-02   p_joint 3.821667e-01

Outputting figure to mutsig2_images.part000000000114/NFKB1.2_3002_30000_0.17773_0.063933_0.38217.png
                gene_name: NFKB1
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.064 
      ci_cons_bounds_left: 0.061 
     ci_cons_bounds_right: 0.067 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.39 

Current progress: 76 percent done.
NFKB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.165822e-02	ci left: 9.132737e-01	ci right 9.240809e-01	k: 9188	n:10000
Cons ci ratio: 1.137492e-02	ci left: 9.169823e-01	ci right 9.275701e-01	k: 9224	n:10000
KS ci ratio: 2.968502e-02	ci left: 6.259785e-01	ci right 6.449425e-01	k: 6355	n:10000
NFKB2   10000 perm   1 sec   (6749 perm/sec)   p_kst 6.355000e-01   p_cons 9.224000e-01   p_joint 9.188000e-01

Outputting figure to mutsig2_images.part000000000114/NFKB2.2_2791_10000_0.6355_0.9224_0.9188.png
                gene_name: NFKB2
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 78 percent done.
NFKBIL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.760723e-03	ci left: 9.677317e-01	ci right 9.743901e-01	k: 9712	n:10000
Cons ci ratio: 5.167123e-02	ci left: 3.557534e-01	ci right 3.747251e-01	k: 3652	n:10000
KS ci ratio: 3.920196e-02	ci left: 4.900514e-01	ci right 5.097486e-01	k: 4999	n:10000
NFKBIL1   10000 perm   1 sec   (7730 perm/sec)   p_kst 4.999000e-01   p_cons 3.652000e-01   p_joint 9.712000e-01

Outputting figure to mutsig2_images.part000000000114/NFKBIL1.2_1162_10000_0.4999_0.3652_0.9712.png
                gene_name: NFKBIL1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.97 

Current progress: 80 percent done.
NFKBIZ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.037541e-02	ci left: 9.295765e-01	ci right 9.393685e-01	k: 9346	n:10000
Cons ci ratio: 2.883207e-02	ci left: 6.394525e-01	ci right 6.582607e-01	k: 6489	n:10000
KS ci ratio: 1.324787e-01	ci left: 7.514340e-02	ci right 8.590246e-02	k: 804	n:10000
NFKBIZ   10000 perm   1 sec   (7410 perm/sec)   p_kst 8.040000e-02   p_cons 6.489000e-01   p_joint 9.346000e-01

Joint ci ratio: 3.697428e-02	ci left: 3.530945e-01	ci right 3.664463e-01	k: 7195	n:20000
Cons ci ratio: 2.057198e-02	ci left: 6.381218e-01	ci right 6.514361e-01	k: 12896	n:20000
KS ci ratio: 9.486915e-02	ci left: 7.490680e-02	ci right 8.241624e-02	k: 1572	n:20000
NFKBIZ   20000 perm   3 sec   (6500 perm/sec)   p_kst 7.860000e-02   p_cons 6.448000e-01   p_joint 3.597500e-01

Outputting figure to mutsig2_images.part000000000114/NFKBIZ.2_2205_20000_0.0786_0.6448_0.35975.png
                gene_name: NFKBIZ
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.079 
        ci_ks_bounds_left: 0.075 
       ci_ks_bounds_right: 0.082 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 82 percent done.
NFRKB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.278700e-01	ci left: 8.038196e-02	ci right 9.146065e-02	k: 858	n:10000
Cons ci ratio: 1.904187e-02	ci left: 8.012576e-01	ci right 8.167620e-01	k: 8091	n:10000
KS ci ratio: 1.368725e-01	ci left: 7.058968e-02	ci right 8.105902e-02	k: 757	n:10000
NFRKB   10000 perm   2 sec   (6276 perm/sec)   p_kst 7.570000e-02   p_cons 8.091000e-01   p_joint 8.580000e-02

Joint ci ratio: 4.467544e-02	ci left: 2.716993e-01	ci right 2.841653e-01	k: 5558	n:20000
Cons ci ratio: 1.408653e-02	ci left: 7.890849e-01	ci right 8.003293e-01	k: 15895	n:20000
KS ci ratio: 9.891973e-02	ci left: 6.918775e-02	ci right 7.643704e-02	k: 1455	n:20000
NFRKB   20000 perm   4 sec   (5587 perm/sec)   p_kst 7.275000e-02   p_cons 7.947500e-01   p_joint 2.779000e-01

Outputting figure to mutsig2_images.part000000000114/NFRKB.2_4075_20000_0.07275_0.79475_0.2779.png
                gene_name: NFRKB
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.073 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.076 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 84 percent done.
NFS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.172698e-02	ci left: 3.552563e-01	ci right 3.742225e-01	k: 3647	n:10000
KS ci ratio: 1.290300e-02	ci left: 8.963130e-01	ci right 9.080515e-01	k: 9023	n:10000
NFS1   10000 perm   1 sec   (7596 perm/sec)   p_kst 9.023000e-01   p_cons 3.647000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000114/NFS1.2_1426_10000_0.9023_0.3647_1.png
                gene_name: NFS1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.37 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
NFX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.415983e-02	ci left: 7.158309e-01	ci right 7.334380e-01	k: 7247	n:10000
KS ci ratio: 4.875899e-02	ci left: 3.829118e-01	ci right 4.021508e-01	k: 3925	n:10000
NFX1   10000 perm   2 sec   (6480 perm/sec)   p_kst 3.925000e-01   p_cons 7.247000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000114/NFX1.2_3577_10000_0.3925_0.7247_1.png
                gene_name: NFX1
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
NGB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.037302e-02	ci left: 2.283967e-01	ci right 2.451569e-01	k: 2367	n:10000
Cons ci ratio: 7.033410e-02	ci left: 2.285942e-01	ci right 2.453593e-01	k: 2369	n:10000
KS ci ratio: 8.639973e-02	ci left: 1.632741e-01	ci right 1.781182e-01	k: 1706	n:10000
NGB   10000 perm   1 sec   (8196 perm/sec)   p_kst 1.706000e-01   p_cons 2.369000e-01   p_joint 2.367000e-01

Outputting figure to mutsig2_images.part000000000114/NGB.2_472_10000_0.1706_0.2369_0.2367.png
                gene_name: NGB
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 90 percent done.
NHEDC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.878780e-02	ci left: 6.401566e-01	ci right 6.589562e-01	k: 6496	n:10000
Cons ci ratio: 4.163696e-02	ci left: 4.599781e-01	ci right 4.796395e-01	k: 4698	n:10000
KS ci ratio: 2.041810e-02	ci left: 7.784370e-01	ci right 7.945958e-01	k: 7866	n:10000
NHEDC1   10000 perm   1 sec   (7386 perm/sec)   p_kst 7.866000e-01   p_cons 4.698000e-01   p_joint 6.496000e-01

Outputting figure to mutsig2_images.part000000000114/NHEDC1.2_1692_10000_0.7866_0.4698_0.6496.png
                gene_name: NHEDC1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 92 percent done.
NHEDC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.410615e-02	ci left: 8.789942e-01	ci right 8.915804e-01	k: 8854	n:10000
Cons ci ratio: 4.933629e-02	ci left: 3.773383e-01	ci right 3.965276e-01	k: 3869	n:10000
KS ci ratio: 3.516762e-02	ci left: 5.441930e-01	ci right 5.637756e-01	k: 5540	n:10000
NHEDC2   10000 perm   1 sec   (7362 perm/sec)   p_kst 5.540000e-01   p_cons 3.869000e-01   p_joint 8.854000e-01

Outputting figure to mutsig2_images.part000000000114/NHEDC2.2_1658_10000_0.554_0.3869_0.8854.png
                gene_name: NHEDC2
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 94 percent done.
NID1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.763529e-02	ci left: 8.242208e-01	ci right 8.389855e-01	k: 8317	n:10000
Cons ci ratio: 6.249646e-03	ci left: 9.720660e-01	ci right 9.782530e-01	k: 9753	n:10000
KS ci ratio: 3.830297e-02	ci left: 5.016506e-01	ci right 5.213427e-01	k: 5115	n:10000
NID1   10000 perm   2 sec   (6540 perm/sec)   p_kst 5.115000e-01   p_cons 9.753000e-01   p_joint 8.317000e-01

Outputting figure to mutsig2_images.part000000000114/NID1.2_3824_10000_0.5115_0.9753_0.8317.png
                gene_name: NID1
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 96 percent done.
NIPAL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.033941e-02	ci left: 4.757596e-01	ci right 4.954488e-01	k: 4856	n:10000
Cons ci ratio: 2.610772e-02	ci left: 6.835521e-01	ci right 7.017356e-01	k: 6927	n:10000
KS ci ratio: 7.812958e-02	ci left: 1.931834e-01	ci right 2.089911e-01	k: 2010	n:10000
NIPAL2   10000 perm   1 sec   (7670 perm/sec)   p_kst 2.010000e-01   p_cons 6.927000e-01   p_joint 4.856000e-01

Outputting figure to mutsig2_images.part000000000114/NIPAL2.2_1155_10000_0.201_0.6927_0.4856.png
                gene_name: NIPAL2
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 98 percent done.
NIPSNAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.594231e-02	ci left: 6.862735e-01	ci right 7.044125e-01	k: 6954	n:10000
Cons ci ratio: 1.994303e-02	ci left: 7.863438e-01	ci right 8.022844e-01	k: 7944	n:10000
KS ci ratio: 5.254030e-02	ci left: 3.480992e-01	ci right 3.669838e-01	k: 3575	n:10000
NIPSNAP1   10000 perm   1 sec   (8182 perm/sec)   p_kst 3.575000e-01   p_cons 7.944000e-01   p_joint 6.954000e-01

Outputting figure to mutsig2_images.part000000000114/NIPSNAP1.2_895_10000_0.3575_0.7944_0.6954.png
                gene_name: NIPSNAP1
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.70 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000114
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 114 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1725>
Subject: Job 8004310: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1725>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000115> was used as the working directory.
Started at Sun Nov 11 15:09:11 2012
Results reported at Sun Nov 11 15:25:44 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000115.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000115.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 115  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000115.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    997.38 sec.
    Max Memory :      4765 MB
    Max Swap   :      7092 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
115
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 115
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 115: processing genes 10315 - 10404
Calculating significance of each gene.
Using projection method.
10315	NIPSNAP3B	3.002664e-01
10316	NISCH	9.953028e-01
10317	NIT1	1
10318	NIT2	2.149189e-01
10319	NKAIN1	1
10320	NKAIN2	4.686045e-03
10321	NKAIN3	5.697014e-03
10322	NKAIN4	1
10323	NKAP	1.774616e-01
10324	NKAPL	1
10325	NKD1	5.104339e-01
10326	NKD2	1.633570e-01
10327	NKG7	2.106908e-01
10328	NKIRAS1	2.712340e-01
10329	NKIRAS2	1
10330	NKPD1	6.045728e-01
10331	NKRF	8.341858e-01
10332	NKTR	8.915436e-01
10333	NKX2-1	4.201435e-01
10334	NKX2-2	1.364907e-03
10335	NKX2-3	1
10336	NKX2-5	2.145862e-01
10337	NKX3-1	1
10338	NKX3-2	1.691827e-02
10339	NKX6-1	2.456556e-01
10340	NKX6-2	1
10341	NKX6-3	1
10342	NLE1	1
10343	NLGN1	8.927859e-01
10344	NLGN2	8.217918e-01
10345	NLGN3	8.141575e-01
10346	NLGN4X	1.422677e-01
10347	NLGN4Y	6.356329e-01
10348	NLK	3.666799e-01
10349	NLN	7.767097e-01
10350	NLRC3	9.772502e-01
10351	NLRC4	5.185820e-01
10352	NLRC5	9.207614e-01
10353	NLRP1	8.805457e-01
10354	NLRP10	8.592812e-01
10355	NLRP11	1
10356	NLRP12	3.750977e-01
10357	NLRP13	5.794564e-01
10358	NLRP14	2.379843e-01
10359	NLRP2	1
10360	NLRP3	8.767699e-01
10361	NLRP4	5.394402e-01
10362	NLRP5	2.610764e-01
10363	NLRP6	4.802444e-01
10364	NLRP7	7.517019e-01
10365	NLRP8	5.417485e-01
10366	NLRP9	3.839900e-01
10367	NLRX1	8.572780e-01
10368	NMB	1
10369	NMBR	2.005984e-01
10370	NMD3	3.630072e-01
10371	NME1	1
10372	NME1-NME2	1
10373	NME2	1
10374	NME3	1.571455e-01
10375	NME4	3.029623e-01
10376	NME5	1
10377	NME6	1
10378	NME7	5.046820e-01
10379	NMI	2.345480e-01
10380	NMNAT1	1
10381	NMNAT2	3.904166e-01
10382	NMNAT3	3.548641e-01
10383	NMRAL1	1
10384	NMS	1
10385	NMT1	1
10386	NMT2	7.880171e-01
10387	NMU	3.727690e-02
10388	NMUR1	1
10389	NMUR2	8.332514e-01
10390	NNAT	1
10391	NNMT	1
10392	NNT	3.724056e-02
10393	NOB1	4.870550e-01
10394	NOBOX	7.578177e-02
10395	NOC2L	9.769406e-01
10396	NOC3L	9.040466e-01
10397	NOC4L	8.443312e-01
10398	NOD1	1
10399	NOD2	1
10400	NODAL	9.996872e-02
10401	NOG	1
10402	NOL10	1
10403	NOL11	6.888921e-01
10404	NOL12	1
Done

Running MutSig 2:
Scatter job 115: processing genes 10315 - 10404
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
NLRP13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.788665e-02	ci left: 3.052063e-01	ci right 3.235020e-01	k: 3143	n:10000
Cons ci ratio: 2.258952e-02	ci left: 7.420988e-01	ci right 7.591550e-01	k: 7507	n:10000
KS ci ratio: 1.077899e-01	ci left: 1.104696e-01	ci right 1.231546e-01	k: 1167	n:10000
NLRP13   10000 perm   2 sec   (4740 perm/sec)   p_kst 1.167000e-01   p_cons 7.507000e-01   p_joint 3.143000e-01

Joint ci ratio: 5.630889e-02	ci left: 1.895287e-01	ci right 2.005601e-01	k: 3900	n:20000
Cons ci ratio: 1.552734e-02	ci left: 7.551781e-01	ci right 7.670459e-01	k: 15223	n:20000
KS ci ratio: 7.536455e-02	ci left: 1.146416e-01	ci right 1.236695e-01	k: 2382	n:20000
NLRP13   20000 perm   6 sec   (3156 perm/sec)   p_kst 1.191000e-01   p_cons 7.611500e-01   p_joint 1.950000e-01

Outputting figure to mutsig2_images.part000000000115/NLRP13.18_3174_20000_0.1191_0.76115_0.195.png
                gene_name: NLRP13
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 2 percent done.
NLRP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.780502e-02	ci left: 8.214750e-01	ci right 8.363328e-01	k: 8290	n:10000
Cons ci ratio: 4.302484e-02	ci left: 4.437074e-01	ci right 4.633197e-01	k: 4535	n:10000
KS ci ratio: 3.115002e-02	ci left: 6.032715e-01	ci right 6.224627e-01	k: 6129	n:10000
NLRP4   10000 perm   2 sec   (5480 perm/sec)   p_kst 6.129000e-01   p_cons 4.535000e-01   p_joint 8.290000e-01

Outputting figure to mutsig2_images.part000000000115/NLRP4.16_3021_10000_0.6129_0.4535_0.829.png
                gene_name: NLRP4
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 4 percent done.
NLGN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.809983e-01	ci left: 4.073298e-02	ci right 4.893483e-02	k: 447	n:10000
Cons ci ratio: 1.591398e-01	ci left: 5.263174e-02	ci right 6.182831e-02	k: 571	n:10000
KS ci ratio: 1.364833e-01	ci left: 7.097701e-02	ci right 8.147145e-02	k: 761	n:10000
NLGN1   10000 perm   2 sec   (5722 perm/sec)   p_kst 7.610000e-02   p_cons 5.710000e-02   p_joint 4.470000e-02

Joint ci ratio: 1.146732e-01	ci left: 5.202621e-02	ci right 5.840388e-02	k: 1103	n:20000
Cons ci ratio: 1.142902e-01	ci left: 5.236672e-02	ci right 5.876326e-02	k: 1110	n:20000
KS ci ratio: 9.610131e-02	ci left: 7.309752e-02	ci right 8.052607e-02	k: 1535	n:20000
NLGN1   20000 perm   4 sec   (5155 perm/sec)   p_kst 7.675000e-02   p_cons 5.550000e-02   p_joint 5.515000e-02

Joint ci ratio: 8.846056e-02	ci left: 5.870939e-02	ci right 6.417592e-02	k: 1842	n:30000
Cons ci ratio: 9.315558e-02	ci left: 5.313126e-02	ci right 5.835519e-02	k: 1671	n:30000
KS ci ratio: 7.802759e-02	ci left: 7.456415e-02	ci right 8.065128e-02	k: 2327	n:30000
NLGN1   30000 perm   6 sec   (4948 perm/sec)   p_kst 7.756667e-02   p_cons 5.570000e-02   p_joint 6.140000e-02

Outputting figure to mutsig2_images.part000000000115/NLGN1.14_2492_30000_0.077567_0.0557_0.0614.png
                gene_name: NLGN1
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.078 
        ci_ks_bounds_left: 0.075 
       ci_ks_bounds_right: 0.081 
                   p_cons: 0.056 
      ci_cons_bounds_left: 0.053 
     ci_cons_bounds_right: 0.058 
                  p_joint: 0.061 
     ci_joint_bounds_left: 0.059 
    ci_joint_bounds_right: 0.064 

Current progress: 6 percent done.
NLRP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.525785e-02	ci left: 1.670085e-01	ci right 1.819816e-01	k: 1744	n:10000
Cons ci ratio: 5.840080e-02	ci left: 3.014375e-01	ci right 3.196729e-01	k: 3105	n:10000
KS ci ratio: 1.104297e-01	ci left: 1.056875e-01	ci right 1.181396e-01	k: 1118	n:10000
NLRP5   10000 perm   2 sec   (4921 perm/sec)   p_kst 1.118000e-01   p_cons 3.105000e-01   p_joint 1.744000e-01

Joint ci ratio: 6.024545e-02	ci left: 1.694107e-01	ci right 1.799840e-01	k: 3493	n:20000
Cons ci ratio: 4.188643e-02	ci left: 2.981259e-01	ci right 3.109309e-01	k: 6090	n:20000
KS ci ratio: 7.957616e-02	ci left: 1.038780e-01	ci right 1.125363e-01	k: 2163	n:20000
NLRP5   20000 perm   4 sec   (4478 perm/sec)   p_kst 1.081500e-01   p_cons 3.045000e-01   p_joint 1.746500e-01

Outputting figure to mutsig2_images.part000000000115/NLRP5.14_3663_20000_0.10815_0.3045_0.17465.png
                gene_name: NLRP5
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 8 percent done.
NLRP14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.498665e-02	ci left: 4.217637e-01	ci right 4.412762e-01	k: 4315	n:10000
Cons ci ratio: 9.316556e-02	ci left: 1.433484e-01	ci right 1.574560e-01	k: 1503	n:10000
KS ci ratio: 1.349449e-02	ci left: 8.879038e-01	ci right 9.000656e-01	k: 8941	n:10000
NLRP14   10000 perm   2 sec   (5393 perm/sec)   p_kst 8.941000e-01   p_cons 1.503000e-01   p_joint 4.315000e-01

Outputting figure to mutsig2_images.part000000000115/NLRP14.13_3326_10000_0.8941_0.1503_0.4315.png
                gene_name: NLRP14
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 10 percent done.
NLRP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.767244e-02	ci left: 3.936645e-01	ci right 4.129918e-01	k: 4033	n:10000
Cons ci ratio: 6.465934e-03	ci left: 9.702664e-01	ci right 9.766537e-01	k: 9736	n:10000
KS ci ratio: 5.662210e-02	ci left: 3.147305e-01	ci right 3.331722e-01	k: 3239	n:10000
NLRP3   10000 perm   2 sec   (4534 perm/sec)   p_kst 3.239000e-01   p_cons 9.736000e-01   p_joint 4.033000e-01

Outputting figure to mutsig2_images.part000000000115/NLRP3.12_3147_10000_0.3239_0.9736_0.4033.png
                gene_name: NLRP3
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 12 percent done.
NLRP8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.873938e-02	ci left: 8.062326e-01	ci right 8.215841e-01	k: 8140	n:10000
Cons ci ratio: 1.260105e-02	ci left: 9.005222e-01	ci right 9.120399e-01	k: 9064	n:10000
KS ci ratio: 2.645772e-02	ci left: 6.778079e-01	ci right 6.960831e-01	k: 6870	n:10000
NLRP8   10000 perm   2 sec   (5288 perm/sec)   p_kst 6.870000e-01   p_cons 9.064000e-01   p_joint 8.140000e-01

Outputting figure to mutsig2_images.part000000000115/NLRP8.12_3187_10000_0.687_0.9064_0.814.png
                gene_name: NLRP8
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 14 percent done.
NLRP12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.824276e-02	ci left: 8.143595e-01	ci right 8.294525e-01	k: 8220	n:10000
Cons ci ratio: 2.833421e-03	ci left: 9.932998e-01	ci right 9.962004e-01	k: 9949	n:10000
KS ci ratio: 2.604030e-02	ci left: 6.846608e-01	ci right 7.028262e-01	k: 6938	n:10000
NLRP12   10000 perm   2 sec   (5444 perm/sec)   p_kst 6.938000e-01   p_cons 9.949000e-01   p_joint 8.220000e-01

Outputting figure to mutsig2_images.part000000000115/NLRP12.11_3322_10000_0.6938_0.9949_0.822.png
                gene_name: NLRP12
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 16 percent done.
NNT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.734719e-02	ci left: 3.969510e-01	ci right 4.163034e-01	k: 4066	n:10000
Cons ci ratio: 3.855665e-02	ci left: 4.983503e-01	ci right 5.180449e-01	k: 5082	n:10000
KS ci ratio: 7.190577e-02	ci left: 2.207943e-01	ci right 2.373638e-01	k: 2290	n:10000
NNT   10000 perm   2 sec   (5475 perm/sec)   p_kst 2.290000e-01   p_cons 5.082000e-01   p_joint 4.066000e-01

Outputting figure to mutsig2_images.part000000000115/NNT.10_3345_10000_0.229_0.5082_0.4066.png
                gene_name: NNT
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 18 percent done.
NOD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.596451e-02	ci left: 5.330750e-01	ci right 5.527000e-01	k: 5429	n:10000
Cons ci ratio: 4.652901e-03	ci left: 9.837165e-01	ci right 9.883940e-01	k: 9862	n:10000
KS ci ratio: 4.640851e-02	ci left: 4.066140e-01	ci right 4.260348e-01	k: 4163	n:10000
NOD2   10000 perm   2 sec   (5823 perm/sec)   p_kst 4.163000e-01   p_cons 9.862000e-01   p_joint 5.429000e-01

Outputting figure to mutsig2_images.part000000000115/NOD2.9_3171_10000_0.4163_0.9862_0.5429.png
                gene_name: NOD2
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 20 percent done.
NLGN4X
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.558222e-02	ci left: 5.383830e-01	ci right 5.579889e-01	k: 5482	n:10000
Cons ci ratio: 2.735360e-02	ci left: 6.632026e-01	ci right 6.816968e-01	k: 6725	n:10000
KS ci ratio: 6.769670e-02	ci left: 2.425253e-01	ci right 2.596199e-01	k: 2510	n:10000
NLGN4X   10000 perm   2 sec   (5702 perm/sec)   p_kst 2.510000e-01   p_cons 6.725000e-01   p_joint 5.482000e-01

Outputting figure to mutsig2_images.part000000000115/NLGN4X.8_2471_10000_0.251_0.6725_0.5482.png
                gene_name: NLGN4X
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 22 percent done.
NLRC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.180587e-02	ci left: 9.113176e-01	ci right 9.222382e-01	k: 9169	n:10000
Cons ci ratio: 2.874356e-02	ci left: 6.408607e-01	ci right 6.596517e-01	k: 6503	n:10000
KS ci ratio: 3.925687e-02	ci left: 4.893516e-01	ci right 5.090488e-01	k: 4992	n:10000
NLRC4   10000 perm   2 sec   (5526 perm/sec)   p_kst 4.992000e-01   p_cons 6.503000e-01   p_joint 9.169000e-01

Outputting figure to mutsig2_images.part000000000115/NLRC4.7_3107_10000_0.4992_0.6503_0.9169.png
                gene_name: NLRC4
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 24 percent done.
NLRP11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.180587e-02	ci left: 9.113176e-01	ci right 9.222382e-01	k: 9169	n:10000
KS ci ratio: 2.682125e-02	ci left: 6.718638e-01	ci right 6.902306e-01	k: 6811	n:10000
NLRP11   10000 perm   2 sec   (6145 perm/sec)   p_kst 6.811000e-01   p_cons 9.169000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000115/NLRP11.7_3138_10000_0.6811_0.9169_1.png
                gene_name: NLRP11
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 25 percent done.
NLRP7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.687240e-02	ci left: 5.206607e-01	ci right 5.403215e-01	k: 5305	n:10000
KS ci ratio: 9.215698e-03	ci left: 9.431544e-01	ci right 9.519826e-01	k: 9477	n:10000
NLRP7   10000 perm   2 sec   (5626 perm/sec)   p_kst 9.477000e-01   p_cons 5.305000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000115/NLRP7.7_3154_10000_0.9477_0.5305_1.png
                gene_name: NLRP7
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 27 percent done.
NKX2-2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.049711e-02	ci left: 7.771196e-01	ci right 7.933139e-01	k: 7853	n:10000
Cons ci ratio: 1.798676e-02	ci left: 8.185266e-01	ci right 8.334830e-01	k: 8261	n:10000
KS ci ratio: 3.544597e-02	ci left: 5.402861e-01	ci right 5.598847e-01	k: 5501	n:10000
NKX2-2   10000 perm   1 sec   (7998 perm/sec)   p_kst 5.501000e-01   p_cons 8.261000e-01   p_joint 7.853000e-01

Outputting figure to mutsig2_images.part000000000115/NKX2-2.6_830_10000_0.5501_0.8261_0.7853.png
                gene_name: NKX2-2
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.79 

Current progress: 29 percent done.
NLRP9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.192157e-02	ci left: 9.097739e-01	ci right 9.207827e-01	k: 9154	n:10000
Cons ci ratio: 1.124744e-02	ci left: 9.186317e-01	ci right 9.291198e-01	k: 9240	n:10000
KS ci ratio: 3.538158e-02	ci left: 5.411876e-01	ci right 5.607827e-01	k: 5510	n:10000
NLRP9   10000 perm   2 sec   (5690 perm/sec)   p_kst 5.510000e-01   p_cons 9.240000e-01   p_joint 9.154000e-01

Outputting figure to mutsig2_images.part000000000115/NLRP9.6_3012_10000_0.551_0.924_0.9154.png
                gene_name: NLRP9
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 31 percent done.
NLRC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.452096e-02	ci left: 2.608218e-01	ci right 2.783127e-01	k: 2695	n:10000
Cons ci ratio: 4.042832e-02	ci left: 4.746606e-01	ci right 4.943484e-01	k: 4845	n:10000
KS ci ratio: 8.968229e-02	ci left: 1.531589e-01	ci right 1.676395e-01	k: 1603	n:10000
NLRC5   10000 perm   2 sec   (5360 perm/sec)   p_kst 1.603000e-01   p_cons 4.845000e-01   p_joint 2.695000e-01

Outputting figure to mutsig2_images.part000000000115/NLRC5.5_5789_10000_0.1603_0.4845_0.2695.png
                gene_name: NLRC5
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 33 percent done.
NLRP10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.522458e-02	ci left: 5.433915e-01	ci right 5.629775e-01	k: 5532	n:10000
Cons ci ratio: 4.537380e-02	ci left: 4.175767e-01	ci right 4.370657e-01	k: 4273	n:10000
KS ci ratio: 5.695986e-02	ci left: 3.121506e-01	ci right 3.305536e-01	k: 3213	n:10000
NLRP10   10000 perm   2 sec   (6017 perm/sec)   p_kst 3.213000e-01   p_cons 4.273000e-01   p_joint 5.532000e-01

Outputting figure to mutsig2_images.part000000000115/NLRP10.5_1976_10000_0.3213_0.4273_0.5532.png
                gene_name: NLRP10
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 35 percent done.
NKAIN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.917035e-02	ci left: 3.789306e-01	ci right 3.981344e-01	k: 3885	n:10000
KS ci ratio: 3.553197e-02	ci left: 5.390841e-01	ci right 5.586874e-01	k: 5489	n:10000
NKAIN2   10000 perm   1 sec   (7150 perm/sec)   p_kst 5.489000e-01   p_cons 3.885000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000115/NKAIN2.4_655_10000_0.5489_0.3885_1.png
                gene_name: NKAIN2
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 37 percent done.
NKAIN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.612609e-02	ci left: 1.641585e-01	ci right 1.790334e-01	k: 1715	n:10000
Cons ci ratio: 7.104141e-02	ci left: 2.250393e-01	ci right 2.417163e-01	k: 2333	n:10000
KS ci ratio: 8.417885e-02	ci left: 1.706458e-01	ci right 1.857422e-01	k: 1781	n:10000
NKAIN3   10000 perm   1 sec   (7588 perm/sec)   p_kst 1.781000e-01   p_cons 2.333000e-01   p_joint 1.715000e-01

Outputting figure to mutsig2_images.part000000000115/NKAIN3.4_618_10000_0.1781_0.2333_0.1715.png
                gene_name: NKAIN3
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.18 

Current progress: 39 percent done.
NLGN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.514666e-02	ci left: 2.057986e-01	ci right 2.219684e-01	k: 2138	n:10000
Cons ci ratio: 2.064358e-01	ci left: 3.119896e-02	ci right 3.847528e-02	k: 347	n:10000
KS ci ratio: 3.326494e-02	ci left: 5.715581e-01	ci right 5.909945e-01	k: 5813	n:10000
NLGN3   10000 perm   2 sec   (6413 perm/sec)   p_kst 5.813000e-01   p_cons 3.470000e-02   p_joint 2.138000e-01

Joint ci ratio: 5.003862e-02	ci left: 2.288898e-01	ci right 2.406874e-01	k: 4695	n:20000
Cons ci ratio: 1.461933e-01	ci left: 3.215814e-02	ci right 3.727829e-02	k: 693	n:20000
KS ci ratio: 2.377541e-02	ci left: 5.692156e-01	ci right 5.829623e-01	k: 11522	n:20000
NLGN3   20000 perm   3 sec   (5791 perm/sec)   p_kst 5.761000e-01   p_cons 3.465000e-02   p_joint 2.347500e-01

Joint ci ratio: 3.867041e-02	ci left: 2.501745e-01	ci right 2.600730e-01	k: 7653	n:30000
Cons ci ratio: 1.200861e-01	ci left: 3.223670e-02	ci right 3.638746e-02	k: 1028	n:30000
KS ci ratio: 1.941690e-02	ci left: 5.703840e-01	ci right 5.816013e-01	k: 17280	n:30000
NLGN3   30000 perm   5 sec   (5520 perm/sec)   p_kst 5.760000e-01   p_cons 3.426667e-02   p_joint 2.551000e-01

Joint ci ratio: 3.500063e-02	ci left: 2.345290e-01	ci right 2.429089e-01	k: 9548	n:40000
Cons ci ratio: 1.036465e-01	ci left: 3.273280e-02	ci right 3.633519e-02	k: 1380	n:40000
KS ci ratio: 1.686739e-02	ci left: 5.696370e-01	ci right 5.793522e-01	k: 22980	n:40000
NLGN3   40000 perm   7 sec   (5352 perm/sec)   p_kst 5.745000e-01   p_cons 3.450000e-02   p_joint 2.387000e-01

Joint ci ratio: 2.570991e-02	ci left: 3.132809e-01	ci right 3.214603e-01	k: 15868	n:50000
Cons ci ratio: 9.232431e-02	ci left: 3.319107e-02	ci right 3.642323e-02	k: 1739	n:50000
KS ci ratio: 1.510403e-02	ci left: 5.695914e-01	ci right 5.782800e-01	k: 28697	n:50000
NLGN3   50000 perm   10 sec   (5214 perm/sec)   p_kst 5.739400e-01   p_cons 3.478000e-02   p_joint 3.173600e-01

Outputting figure to mutsig2_images.part000000000115/NLGN3.4_2575_50000_0.57394_0.03478_0.31736.png
                gene_name: NLGN3
               theta_stop: 0.092 
                    nperm: 50000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.035 
      ci_cons_bounds_left: 0.033 
     ci_cons_bounds_right: 0.036 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 41 percent done.
NLRP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.571839e-01	ci left: 9.776646e-03	ci right 1.411465e-02	k: 118	n:10000
Cons ci ratio: 3.763418e-02	ci left: 5.104535e-01	ci right 5.301346e-01	k: 5203	n:10000
KS ci ratio: 6.035677e-01	ci left: 2.943789e-03	ci right 5.558045e-03	k: 41	n:10000
NLRP1   10000 perm   2 sec   (5794 perm/sec)   p_kst 4.100000e-03   p_cons 5.203000e-01   p_joint 1.180000e-02

Joint ci ratio: 2.021709e-01	ci left: 1.658271e-02	ci right 2.035914e-02	k: 368	n:20000
Cons ci ratio: 2.705376e-02	ci left: 5.051462e-01	ci right 5.190503e-01	k: 10242	n:20000
KS ci ratio: 4.429753e-01	ci left: 3.039518e-03	ci right 4.809524e-03	k: 77	n:20000
NLRP1   20000 perm   4 sec   (5200 perm/sec)   p_kst 3.850000e-03   p_cons 5.121000e-01   p_joint 1.840000e-02

Joint ci ratio: 1.780490e-01	ci left: 1.448301e-02	ci right 1.734519e-02	k: 476	n:30000
Cons ci ratio: 2.205891e-02	ci left: 5.071262e-01	ci right 5.184713e-01	k: 15384	n:30000
KS ci ratio: 3.680613e-01	ci left: 3.074978e-03	ci right 4.490465e-03	k: 112	n:30000
NLRP1   30000 perm   6 sec   (4988 perm/sec)   p_kst 3.733333e-03   p_cons 5.128000e-01   p_joint 1.586667e-02

Joint ci ratio: 2.059566e-01	ci left: 8.050337e-03	ci right 9.921990e-03	k: 358	n:40000
Cons ci ratio: 1.909808e-02	ci left: 5.080384e-01	ci right 5.178597e-01	k: 20518	n:40000
KS ci ratio: 3.272163e-01	ci left: 2.990936e-03	ci right 4.182924e-03	k: 142	n:40000
NLRP1   40000 perm   8 sec   (4855 perm/sec)   p_kst 3.550000e-03   p_cons 5.129500e-01   p_joint 8.950000e-03

Joint ci ratio: 1.906986e-01	ci left: 7.580572e-03	ci right 9.197284e-03	k: 418	n:50000
Cons ci ratio: 1.782013e-02	ci left: 4.874086e-01	ci right 4.961924e-01	k: 24590	n:50000
KS ci ratio: 2.941203e-01	ci left: 3.019884e-03	ci right 4.079046e-03	k: 176	n:50000
NLRP1   50000 perm   11 sec   (4708 perm/sec)   p_kst 3.520000e-03   p_cons 4.918000e-01   p_joint 8.360000e-03

Joint ci ratio: 1.802985e-01	ci left: 7.111642e-03	ci right 8.536584e-03	k: 468	n:60000
Cons ci ratio: 1.582470e-02	ci left: 5.015910e-01	ci right 5.096085e-01	k: 30336	n:60000
KS ci ratio: 2.719862e-01	ci left: 2.981118e-03	ci right 3.934575e-03	k: 206	n:60000
NLRP1   60000 perm   13 sec   (4528 perm/sec)   p_kst 3.433333e-03   p_cons 5.056000e-01   p_joint 7.800000e-03

Joint ci ratio: 1.498148e-01	ci left: 8.959673e-03	ci right 1.042426e-02	k: 677	n:70000
Cons ci ratio: 1.462035e-02	ci left: 5.029318e-01	ci right 5.103533e-01	k: 35465	n:70000
KS ci ratio: 2.515494e-01	ci left: 3.022488e-03	ci right 3.905176e-03	k: 241	n:70000
NLRP1   70000 perm   16 sec   (4461 perm/sec)   p_kst 3.442857e-03   p_cons 5.066429e-01   p_joint 9.671429e-03

Joint ci ratio: 1.465640e-01	ci left: 8.212610e-03	ci right 9.523379e-03	k: 708	n:80000
Cons ci ratio: 1.364382e-02	ci left: 5.043542e-01	ci right 5.112952e-01	k: 40626	n:80000
KS ci ratio: 2.368426e-01	ci left: 3.008481e-03	ci right 3.828183e-03	k: 272	n:80000
NLRP1   80000 perm   18 sec   (4367 perm/sec)   p_kst 3.400000e-03   p_cons 5.078250e-01   p_joint 8.850000e-03

Joint ci ratio: 1.390308e-01	ci left: 8.146509e-03	ci right 9.374357e-03	k: 787	n:90000
Cons ci ratio: 1.286475e-02	ci left: 5.045058e-01	ci right 5.110492e-01	k: 45700	n:90000
KS ci ratio: 2.286345e-01	ci left: 2.883451e-03	ci right 3.638016e-03	k: 292	n:90000
NLRP1   90000 perm   21 sec   (4288 perm/sec)   p_kst 3.244444e-03   p_cons 5.077778e-01   p_joint 8.744444e-03

Joint ci ratio: 1.421231e-01	ci left: 7.013168e-03	ci right 8.095690e-03	k: 754	n:100000
Cons ci ratio: 1.222213e-02	ci left: 5.039562e-01	ci right 5.101634e-01	k: 50706	n:100000
KS ci ratio: 2.174236e-01	ci left: 2.887797e-03	ci right 3.601497e-03	k: 323	n:100000
NLRP1   100000 perm   24 sec   (4217 perm/sec)   p_kst 3.230000e-03   p_cons 5.070600e-01   p_joint 7.540000e-03

Joint ci ratio: 1.009655e-01	ci left: 1.283520e-02	ci right 1.420881e-02	k: 1486	n:110000
Cons ci ratio: 1.165752e-02	ci left: 5.039226e-01	ci right 5.098406e-01	k: 55757	n:110000
KS ci ratio: 2.065509e-01	ci left: 2.926575e-03	ci right 3.609121e-03	k: 358	n:110000
NLRP1   110000 perm   26 sec   (4156 perm/sec)   p_kst 3.254545e-03   p_cons 5.068818e-01   p_joint 1.350909e-02

Joint ci ratio: 1.089810e-01	ci left: 1.008502e-02	ci right 1.125548e-02	k: 1279	n:120000
Cons ci ratio: 1.115544e-02	ci left: 5.043087e-01	ci right 5.099743e-01	k: 60857	n:120000
KS ci ratio: 2.013044e-01	ci left: 2.832928e-03	ci right 3.474788e-03	k: 377	n:120000
NLRP1   120000 perm   29 sec   (4099 perm/sec)   p_kst 3.141667e-03   p_cons 5.071417e-01   p_joint 1.065833e-02

Joint ci ratio: 1.078412e-01	ci left: 9.518639e-03	ci right 1.061107e-02	k: 1307	n:130000
Cons ci ratio: 1.071705e-02	ci left: 5.044552e-01	ci right 5.098983e-01	k: 65933	n:130000
KS ci ratio: 1.923497e-01	ci left: 2.878299e-03	ci right 3.498036e-03	k: 413	n:130000
NLRP1   130000 perm   32 sec   (4044 perm/sec)   p_kst 3.176923e-03   p_cons 5.071769e-01   p_joint 1.005385e-02

Joint ci ratio: 8.840303e-02	ci left: 1.323734e-02	ci right 1.446863e-02	k: 1938	n:140000
Cons ci ratio: 1.032320e-02	ci left: 5.047489e-01	ci right 5.099937e-01	k: 71032	n:140000
KS ci ratio: 1.863718e-01	ci left: 2.856419e-03	ci right 3.450169e-03	k: 440	n:140000
NLRP1   140000 perm   35 sec   (3984 perm/sec)   p_kst 3.142857e-03   p_cons 5.073714e-01   p_joint 1.384286e-02

Joint ci ratio: 8.853699e-02	ci left: 1.232852e-02	ci right 1.347709e-02	k: 1934	n:150000
Cons ci ratio: 9.966611e-03	ci left: 5.051665e-01	ci right 5.102332e-01	k: 76155	n:150000
KS ci ratio: 1.797663e-01	ci left: 2.875914e-03	ci right 3.450224e-03	k: 473	n:150000
NLRP1   150000 perm   38 sec   (3927 perm/sec)   p_kst 3.153333e-03   p_cons 5.077000e-01   p_joint 1.289333e-02

Joint ci ratio: 8.911078e-02	ci left: 1.141719e-02	ci right 1.248810e-02	k: 1911	n:160000
Cons ci ratio: 9.657257e-03	ci left: 5.048783e-01	ci right 5.097839e-01	k: 81173	n:160000
KS ci ratio: 1.750331e-01	ci left: 2.851451e-03	ci right 3.404297e-03	k: 499	n:160000
NLRP1   160000 perm   41 sec   (3874 perm/sec)   p_kst 3.118750e-03   p_cons 5.073313e-01   p_joint 1.194375e-02

Joint ci ratio: 8.365042e-02	ci left: 1.221917e-02	ci right 1.329166e-02	k: 2167	n:170000
Cons ci ratio: 9.631720e-03	ci left: 4.911206e-01	ci right 4.958796e-01	k: 83895	n:170000
KS ci ratio: 1.706550e-01	ci left: 2.830041e-03	ci right 3.363599e-03	k: 525	n:170000
NLRP1   170000 perm   44 sec   (3822 perm/sec)   p_kst 3.088235e-03   p_cons 4.935000e-01   p_joint 1.274706e-02

Joint ci ratio: 7.680104e-02	ci left: 1.371843e-02	ci right 1.481951e-02	k: 2567	n:180000
Cons ci ratio: 9.357962e-03	ci left: 4.913155e-01	ci right 4.959403e-01	k: 88853	n:180000
KS ci ratio: 1.664386e-01	ci left: 2.816488e-03	ci right 3.333056e-03	k: 552	n:180000
NLRP1   180000 perm   48 sec   (3772 perm/sec)   p_kst 3.066667e-03   p_cons 4.936278e-01   p_joint 1.426111e-02

Joint ci ratio: 7.741298e-02	ci left: 1.280003e-02	ci right 1.383595e-02	k: 2529	n:190000
Cons ci ratio: 9.116077e-03	ci left: 4.909547e-01	ci right 4.954560e-01	k: 93709	n:190000
KS ci ratio: 1.612698e-01	ci left: 2.849961e-03	ci right 3.354862e-03	k: 588	n:190000
NLRP1   190000 perm   51 sec   (3726 perm/sec)   p_kst 3.094737e-03   p_cons 4.932053e-01   p_joint 1.331053e-02

Joint ci ratio: 6.676335e-02	ci left: 1.637895e-02	ci right 1.751512e-02	k: 3388	n:200000
Cons ci ratio: 8.881707e-03	ci left: 4.912115e-01	ci right 4.955987e-01	k: 98681	n:200000
KS ci ratio: 1.565544e-01	ci left: 2.880309e-03	ci right 3.374266e-03	k: 624	n:200000
NLRP1   200000 perm   54 sec   (3678 perm/sec)   p_kst 3.120000e-03   p_cons 4.934050e-01   p_joint 1.694000e-02

Joint ci ratio: 6.733812e-02	ci left: 1.534589e-02	ci right 1.641991e-02	k: 3334	n:210000
Cons ci ratio: 8.665437e-03	ci left: 4.913927e-01	ci right 4.956741e-01	k: 103642	n:210000
KS ci ratio: 1.521144e-01	ci left: 2.912542e-03	ci right 3.396571e-03	k: 661	n:210000
NLRP1   210000 perm   58 sec   (3630 perm/sec)   p_kst 3.147619e-03   p_cons 4.935333e-01   p_joint 1.587619e-02

Joint ci ratio: 6.636953e-02	ci left: 1.509076e-02	ci right 1.613115e-02	k: 3433	n:220000
Cons ci ratio: 8.463308e-03	ci left: 4.916132e-01	ci right 4.957961e-01	k: 108615	n:220000
KS ci ratio: 1.487812e-01	ci left: 2.911384e-03	ci right 3.383675e-03	k: 691	n:220000
NLRP1   220000 perm   61 sec   (3586 perm/sec)   p_kst 3.140909e-03   p_cons 4.937045e-01   p_joint 1.560455e-02

Joint ci ratio: 6.777826e-02	ci left: 1.384868e-02	ci right 1.482449e-02	k: 3296	n:230000
Cons ci ratio: 8.271887e-03	ci left: 4.919851e-01	ci right 4.960759e-01	k: 113627	n:230000
KS ci ratio: 1.463713e-01	ci left: 2.881106e-03	ci right 3.340253e-03	k: 714	n:230000
NLRP1   230000 perm   65 sec   (3543 perm/sec)   p_kst 3.104348e-03   p_cons 4.940304e-01   p_joint 1.433043e-02

Joint ci ratio: 6.833670e-02	ci left: 1.306258e-02	ci right 1.399089e-02	k: 3245	n:240000
Cons ci ratio: 8.096733e-03	ci left: 4.920894e-01	ci right 4.960941e-01	k: 118582	n:240000
KS ci ratio: 1.436848e-01	ci left: 2.869477e-03	ci right 3.317657e-03	k: 741	n:240000
NLRP1   240000 perm   69 sec   (3495 perm/sec)   p_kst 3.087500e-03   p_cons 4.940917e-01   p_joint 1.352083e-02

Joint ci ratio: 6.249872e-02	ci left: 1.500758e-02	ci right 1.597970e-02	k: 3872	n:250000
Cons ci ratio: 7.936825e-03	ci left: 4.918983e-01	ci right 4.958219e-01	k: 123465	n:250000
KS ci ratio: 1.405919e-01	ci left: 2.882005e-03	ci right 3.321640e-03	k: 774	n:250000
NLRP1   250000 perm   72 sec   (3451 perm/sec)   p_kst 3.096000e-03   p_cons 4.938600e-01   p_joint 1.548800e-02

Joint ci ratio: 6.401921e-02	ci left: 1.376008e-02	ci right 1.467388e-02	k: 3695	n:260000
Cons ci ratio: 7.781837e-03	ci left: 4.919918e-01	ci right 4.958391e-01	k: 128418	n:260000
KS ci ratio: 1.374347e-01	ci left: 2.904807e-03	ci right 3.337156e-03	k: 810	n:260000
NLRP1   260000 perm   76 sec   (3407 perm/sec)   p_kst 3.115385e-03   p_cons 4.939154e-01   p_joint 1.421154e-02

Joint ci ratio: 6.304072e-02	ci left: 1.367323e-02	ci right 1.456688e-02	k: 3811	n:270000
Cons ci ratio: 7.644304e-03	ci left: 4.915087e-01	ci right 4.952840e-01	k: 133217	n:270000
KS ci ratio: 1.361026e-01	ci left: 2.854448e-03	ci right 3.274850e-03	k: 826	n:270000
NLRP1   270000 perm   80 sec   (3363 perm/sec)   p_kst 3.059259e-03   p_cons 4.933963e-01   p_joint 1.411481e-02

Joint ci ratio: 6.309881e-02	ci left: 1.316721e-02	ci right 1.402861e-02	k: 3806	n:280000
Cons ci ratio: 7.505431e-03	ci left: 4.916179e-01	ci right 4.953251e-01	k: 138172	n:280000
KS ci ratio: 1.340923e-01	ci left: 2.838770e-03	ci right 3.250194e-03	k: 851	n:280000
NLRP1   280000 perm   84 sec   (3320 perm/sec)   p_kst 3.039286e-03   p_cons 4.934714e-01   p_joint 1.359286e-02

Joint ci ratio: 6.391822e-02	ci left: 1.239402e-02	ci right 1.321575e-02	k: 3712	n:290000
Cons ci ratio: 7.374625e-03	ci left: 4.916684e-01	ci right 4.953111e-01	k: 143112	n:290000
KS ci ratio: 1.319423e-01	ci left: 2.834219e-03	ci right 3.237882e-03	k: 879	n:290000
NLRP1   290000 perm   88 sec   (3282 perm/sec)   p_kst 3.031034e-03   p_cons 4.934897e-01   p_joint 1.280000e-02

Joint ci ratio: 6.462283e-02	ci left: 1.172494e-02	ci right 1.251120e-02	k: 3634	n:300000
Cons ci ratio: 7.250185e-03	ci left: 4.917327e-01	ci right 4.953141e-01	k: 148057	n:300000
KS ci ratio: 1.298925e-01	ci left: 2.830022e-03	ci right 3.226342e-03	k: 907	n:300000
NLRP1   300000 perm   93 sec   (3243 perm/sec)   p_kst 3.023333e-03   p_cons 4.935233e-01   p_joint 1.211333e-02

Joint ci ratio: 5.861446e-02	ci left: 1.380552e-02	ci right 1.464231e-02	k: 4408	n:310000
Cons ci ratio: 7.132254e-03	ci left: 4.917643e-01	ci right 4.952874e-01	k: 152993	n:310000
KS ci ratio: 1.274583e-01	ci left: 2.848001e-03	ci right 3.238800e-03	k: 942	n:310000
NLRP1   310000 perm   97 sec   (3196 perm/sec)   p_kst 3.038710e-03   p_cons 4.935258e-01   p_joint 1.421935e-02

Joint ci ratio: 6.917866e-02	ci left: 9.590567e-03	ci right 1.028085e-02	k: 3178	n:320000
Cons ci ratio: 6.730940e-03	ci left: 5.128073e-01	ci right 5.162737e-01	k: 164653	n:320000
KS ci ratio: 1.255428e-01	ci left: 2.846758e-03	ci right 3.231079e-03	k: 971	n:320000
NLRP1   320000 perm   101 sec   (3160 perm/sec)   p_kst 3.034375e-03   p_cons 5.145406e-01   p_joint 9.931250e-03

Joint ci ratio: 6.926622e-02	ci left: 9.279047e-03	ci right 9.947788e-03	k: 3171	n:330000
Cons ci ratio: 6.624089e-03	ci left: 5.131417e-01	ci right 5.165550e-01	k: 169900	n:330000
KS ci ratio: 1.234639e-01	ci left: 2.857379e-03	ci right 3.236279e-03	k: 1004	n:330000
NLRP1   330000 perm   106 sec   (3126 perm/sec)   p_kst 3.042424e-03   p_cons 5.148485e-01   p_joint 9.609091e-03

Joint ci ratio: 5.918444e-02	ci left: 1.236108e-02	ci right 1.311785e-02	k: 4330	n:340000
Cons ci ratio: 6.526122e-03	ci left: 5.131538e-01	ci right 5.165165e-01	k: 175044	n:340000
KS ci ratio: 1.218388e-01	ci left: 2.850313e-03	ci right 3.222942e-03	k: 1031	n:340000
NLRP1   340000 perm   110 sec   (3096 perm/sec)   p_kst 3.032353e-03   p_cons 5.148353e-01   p_joint 1.273529e-02

Joint ci ratio: 5.517981e-02	ci left: 1.382190e-02	ci right 1.460903e-02	k: 4974	n:350000
Cons ci ratio: 6.430428e-03	ci left: 5.133170e-01	ci right 5.166313e-01	k: 180241	n:350000
KS ci ratio: 1.202192e-01	ci left: 2.846454e-03	ci right 3.213280e-03	k: 1059	n:350000
NLRP1   350000 perm   114 sec   (3064 perm/sec)   p_kst 3.025714e-03   p_cons 5.149743e-01   p_joint 1.421143e-02

Joint ci ratio: 5.733840e-02	ci left: 1.244903e-02	ci right 1.318662e-02	k: 4613	n:360000
Cons ci ratio: 6.339985e-03	ci left: 5.133798e-01	ci right 5.166477e-01	k: 185405	n:360000
KS ci ratio: 1.187173e-01	ci left: 2.840144e-03	ci right 3.201263e-03	k: 1086	n:360000
NLRP1   360000 perm   119 sec   (3034 perm/sec)   p_kst 3.016667e-03   p_cons 5.150139e-01   p_joint 1.281389e-02

Joint ci ratio: 5.726683e-02	ci left: 1.214714e-02	ci right 1.286593e-02	k: 4626	n:370000
Cons ci ratio: 6.251124e-03	ci left: 5.136098e-01	ci right 5.168332e-01	k: 190632	n:370000
KS ci ratio: 1.171649e-01	ci left: 2.839449e-03	ci right 3.195432e-03	k: 1115	n:370000
NLRP1   370000 perm   123 sec   (3005 perm/sec)   p_kst 3.013514e-03   p_cons 5.152216e-01   p_joint 1.250270e-02

Joint ci ratio: 5.652669e-02	ci left: 1.214397e-02	ci right 1.285297e-02	k: 4748	n:380000
Cons ci ratio: 6.165635e-03	ci left: 5.138491e-01	ci right 5.170296e-01	k: 195867	n:380000
KS ci ratio: 1.150686e-01	ci left: 2.869490e-03	ci right 3.222366e-03	k: 1156	n:380000
NLRP1   380000 perm   128 sec   (2975 perm/sec)   p_kst 3.042105e-03   p_cons 5.154395e-01   p_joint 1.249474e-02

Joint ci ratio: 5.608919e-02	ci left: 1.202216e-02	ci right 1.271844e-02	k: 4823	n:390000
Cons ci ratio: 6.087900e-03	ci left: 5.137199e-01	ci right 5.168594e-01	k: 200963	n:390000
KS ci ratio: 1.137977e-01	ci left: 2.860671e-03	ci right 3.208316e-03	k: 1182	n:390000
NLRP1   390000 perm   132 sec   (2945 perm/sec)   p_kst 3.030769e-03   p_cons 5.152897e-01   p_joint 1.236667e-02

Joint ci ratio: 5.668972e-02	ci left: 1.147751e-02	ci right 1.214959e-02	k: 4724	n:400000
Cons ci ratio: 6.009452e-03	ci left: 5.138949e-01	ci right 5.169949e-01	k: 206178	n:400000
KS ci ratio: 1.123817e-01	ci left: 2.862033e-03	ci right 3.205229e-03	k: 1212	n:400000
NLRP1   400000 perm   137 sec   (2916 perm/sec)   p_kst 3.030000e-03   p_cons 5.154450e-01   p_joint 1.181000e-02

Joint ci ratio: 5.630746e-02	ci left: 1.135384e-02	ci right 1.201406e-02	k: 4789	n:410000
Cons ci ratio: 5.935438e-03	ci left: 5.139372e-01	ci right 5.169991e-01	k: 211342	n:410000
KS ci ratio: 1.109725e-01	ci left: 2.865725e-03	ci right 3.204773e-03	k: 1243	n:410000
NLRP1   410000 perm   142 sec   (2887 perm/sec)   p_kst 3.031707e-03   p_cons 5.154683e-01   p_joint 1.168049e-02

Joint ci ratio: 5.693787e-02	ci left: 1.084167e-02	ci right 1.147939e-02	k: 4686	n:420000
Cons ci ratio: 5.863561e-03	ci left: 5.140230e-01	ci right 5.170482e-01	k: 216525	n:420000
KS ci ratio: 1.095720e-01	ci left: 2.871583e-03	ci right 3.206759e-03	k: 1275	n:420000
NLRP1   420000 perm   147 sec   (2856 perm/sec)   p_kst 3.035714e-03   p_cons 5.155357e-01   p_joint 1.115714e-02

Joint ci ratio: 5.626951e-02	ci left: 1.084631e-02	ci right 1.147658e-02	k: 4798	n:430000
Cons ci ratio: 5.796608e-03	ci left: 5.139003e-01	ci right 5.168902e-01	k: 221620	n:430000
KS ci ratio: 1.085148e-01	ci left: 2.861355e-03	ci right 3.191909e-03	k: 1300	n:430000
NLRP1   430000 perm   152 sec   (2826 perm/sec)   p_kst 3.023256e-03   p_cons 5.153953e-01   p_joint 1.115814e-02

Joint ci ratio: 5.764007e-02	ci left: 1.010233e-02	ci right 1.070414e-02	k: 4576	n:440000
Cons ci ratio: 5.731610e-03	ci left: 5.138084e-01	ci right 5.167641e-01	k: 226726	n:440000
KS ci ratio: 1.070432e-01	ci left: 2.875938e-03	ci right 3.203388e-03	k: 1336	n:440000
NLRP1   440000 perm   157 sec   (2796 perm/sec)   p_kst 3.036364e-03   p_cons 5.152864e-01   p_joint 1.040000e-02

Joint ci ratio: 5.506149e-02	ci left: 1.083100e-02	ci right 1.144643e-02	k: 5011	n:450000
Cons ci ratio: 5.668069e-03	ci left: 5.137808e-01	ci right 5.167034e-01	k: 231859	n:450000
KS ci ratio: 1.058233e-01	ci left: 2.879084e-03	ci right 3.202923e-03	k: 1367	n:450000
NLRP1   450000 perm   163 sec   (2769 perm/sec)   p_kst 3.037778e-03   p_cons 5.152422e-01   p_joint 1.113556e-02

Joint ci ratio: 5.595537e-02	ci left: 1.026103e-02	ci right 1.085385e-02	k: 4855	n:460000
Cons ci ratio: 5.607083e-03	ci left: 5.137111e-01	ci right 5.166018e-01	k: 236972	n:460000
KS ci ratio: 1.044572e-01	ci left: 2.892699e-03	ci right 3.213611e-03	k: 1403	n:460000
NLRP1   460000 perm   168 sec   (2737 perm/sec)   p_kst 3.050000e-03   p_cons 5.151565e-01   p_joint 1.055435e-02

Joint ci ratio: 5.614896e-02	ci left: 9.975543e-03	ci right 1.055392e-02	k: 4823	n:470000
Cons ci ratio: 5.546937e-03	ci left: 5.137424e-01	ci right 5.166021e-01	k: 242131	n:470000
KS ci ratio: 1.031426e-01	ci left: 2.905760e-03	ci right 3.223819e-03	k: 1439	n:470000
NLRP1   470000 perm   173 sec   (2711 perm/sec)   p_kst 3.061702e-03   p_cons 5.151723e-01   p_joint 1.026170e-02

Joint ci ratio: 5.587489e-02	ci left: 9.866303e-03	ci right 1.043547e-02	k: 4871	n:480000
Cons ci ratio: 5.488457e-03	ci left: 5.137934e-01	ci right 5.166231e-01	k: 247300	n:480000
KS ci ratio: 1.020499e-01	ci left: 2.908150e-03	ci right 3.222896e-03	k: 1470	n:480000
NLRP1   480000 perm   179 sec   (2686 perm/sec)   p_kst 3.062500e-03   p_cons 5.152083e-01   p_joint 1.014792e-02

Joint ci ratio: 5.325946e-02	ci left: 1.064337e-02	ci right 1.122774e-02	k: 5357	n:490000
Cons ci ratio: 5.432854e-03	ci left: 5.137445e-01	ci right 5.165452e-01	k: 252421	n:490000
KS ci ratio: 1.012962e-01	ci left: 2.892555e-03	ci right 3.203163e-03	k: 1492	n:490000
NLRP1   490000 perm   184 sec   (2662 perm/sec)   p_kst 3.044898e-03   p_cons 5.151449e-01   p_joint 1.093265e-02

Joint ci ratio: 5.281384e-02	ci left: 1.061009e-02	ci right 1.118760e-02	k: 5448	n:500000
Cons ci ratio: 5.377400e-03	ci left: 5.138377e-01	ci right 5.166102e-01	k: 257612	n:500000
KS ci ratio: 1.003266e-01	ci left: 2.891241e-03	ci right 3.198562e-03	k: 1521	n:500000
NLRP1   500000 perm   190 sec   (2638 perm/sec)   p_kst 3.042000e-03   p_cons 5.152240e-01   p_joint 1.089600e-02

Joint ci ratio: 5.133095e-02	ci left: 1.101558e-02	ci right 1.159784e-02	k: 5765	n:510000
Cons ci ratio: 5.325992e-03	ci left: 5.137038e-01	ci right 5.164490e-01	k: 262689	n:510000
KS ci ratio: 9.954550e-02	ci left: 2.880432e-03	ci right 3.184081e-03	k: 1545	n:510000
NLRP1   510000 perm   195 sec   (2616 perm/sec)   p_kst 3.029412e-03   p_cons 5.150765e-01   p_joint 1.130392e-02

Outputting figure to mutsig2_images.part000000000115/NLRP1.4_4565_510000_0.0030294_0.51508_0.011304.png
                gene_name: NLRP1
               theta_stop: 0.100 
                    nperm: 510000 
                     p_ks: 0.0030 
        ci_ks_bounds_left: 0.0029 
       ci_ks_bounds_right: 0.0032 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.011 
     ci_joint_bounds_left: 0.011 
    ci_joint_bounds_right: 0.012 

Current progress: 43 percent done.
NOBOX
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.037220e-01	ci left: 3.205417e-02	ci right 3.941949e-02	k: 356	n:10000
Cons ci ratio: 5.541639e-02	ci left: 3.241598e-01	ci right 3.427373e-01	k: 3334	n:10000
KS ci ratio: 7.677370e-01	ci left: 1.618501e-03	ci right 3.688296e-03	k: 25	n:10000
NOBOX   10000 perm   1 sec   (6695 perm/sec)   p_kst 2.500000e-03   p_cons 3.334000e-01   p_joint 3.560000e-02

Joint ci ratio: 1.978447e-01	ci left: 1.734330e-02	ci right 2.119826e-02	k: 384	n:20000
Cons ci ratio: 3.897908e-02	ci left: 3.292541e-01	ci right 3.423937e-01	k: 6716	n:20000
KS ci ratio: 5.651098e-01	ci left: 1.727187e-03	ci right 3.123791e-03	k: 47	n:20000
NOBOX   20000 perm   3 sec   (5992 perm/sec)   p_kst 2.350000e-03   p_cons 3.358000e-01   p_joint 1.920000e-02

Joint ci ratio: 2.003455e-01	ci left: 1.133685e-02	ci right 1.389217e-02	k: 377	n:30000
Cons ci ratio: 3.182985e-02	ci left: 3.304221e-01	ci right 3.411430e-01	k: 10073	n:30000
KS ci ratio: 4.713617e-01	ci left: 1.760572e-03	ci right 2.872668e-03	k: 68	n:30000
NOBOX   30000 perm   5 sec   (5686 perm/sec)   p_kst 2.266667e-03   p_cons 3.357667e-01   p_joint 1.256667e-02

Joint ci ratio: 2.053802e-01	ci left: 8.097782e-03	ci right 9.974535e-03	k: 360	n:40000
Cons ci ratio: 2.758091e-02	ci left: 3.308974e-01	ci right 3.401765e-01	k: 13421	n:40000
KS ci ratio: 4.082129e-01	ci left: 1.832071e-03	ci right 2.792472e-03	k: 91	n:40000
NOBOX   40000 perm   7 sec   (5498 perm/sec)   p_kst 2.275000e-03   p_cons 3.355250e-01   p_joint 9.000000e-03

Joint ci ratio: 2.079007e-01	ci left: 6.325885e-03	ci right 7.812210e-03	k: 352	n:50000
Cons ci ratio: 2.467631e-02	ci left: 3.312613e-01	ci right 3.395578e-01	k: 16770	n:50000
KS ci ratio: 3.619763e-01	ci left: 1.917428e-03	ci right 2.781975e-03	k: 116	n:50000
NOBOX   50000 perm   9 sec   (5346 perm/sec)   p_kst 2.320000e-03   p_cons 3.354000e-01   p_joint 7.040000e-03

Joint ci ratio: 1.950986e-01	ci left: 6.031146e-03	ci right 7.350583e-03	k: 400	n:60000
Cons ci ratio: 2.249113e-02	ci left: 3.323200e-01	ci right 3.398959e-01	k: 20166	n:60000
KS ci ratio: 3.309110e-01	ci left: 1.947903e-03	ci right 2.734806e-03	k: 139	n:60000
NOBOX   60000 perm   12 sec   (5201 perm/sec)   p_kst 2.316667e-03   p_cons 3.361000e-01   p_joint 6.666667e-03

Joint ci ratio: 1.862891e-01	ci left: 5.700015e-03	ci right 6.884327e-03	k: 439	n:70000
Cons ci ratio: 2.083019e-02	ci left: 3.324436e-01	ci right 3.394557e-01	k: 23516	n:70000
KS ci ratio: 3.048095e-01	ci left: 1.998336e-03	ci right 2.729608e-03	k: 164	n:70000
NOBOX   70000 perm   14 sec   (5083 perm/sec)   p_kst 2.342857e-03   p_cons 3.359429e-01   p_joint 6.271429e-03

Joint ci ratio: 1.818464e-01	ci left: 5.249728e-03	ci right 6.311595e-03	k: 461	n:80000
Cons ci ratio: 1.947535e-02	ci left: 3.328888e-01	ci right 3.394481e-01	k: 26893	n:80000
KS ci ratio: 2.847993e-01	ci left: 2.026386e-03	ci right 2.710502e-03	k: 188	n:80000
NOBOX   80000 perm   16 sec   (4974 perm/sec)   p_kst 2.350000e-03   p_cons 3.361625e-01   p_joint 5.762500e-03

Joint ci ratio: 1.393881e-01	ci left: 8.103600e-03	ci right 9.328381e-03	k: 783	n:90000
Cons ci ratio: 1.839071e-02	ci left: 3.323707e-01	ci right 3.385510e-01	k: 30191	n:90000
KS ci ratio: 2.701884e-01	ci left: 2.018339e-03	ci right 2.658858e-03	k: 209	n:90000
NOBOX   90000 perm   19 sec   (4842 perm/sec)   p_kst 2.322222e-03   p_cons 3.354556e-01   p_joint 8.700000e-03

Joint ci ratio: 1.323972e-01	ci left: 8.114356e-03	ci right 9.274411e-03	k: 868	n:100000
Cons ci ratio: 1.744135e-02	ci left: 3.326731e-01	ci right 3.385364e-01	k: 33560	n:100000
KS ci ratio: 2.491142e-01	ci left: 2.162481e-03	ci right 2.786935e-03	k: 246	n:100000
NOBOX   100000 perm   21 sec   (4743 perm/sec)   p_kst 2.460000e-03   p_cons 3.356000e-01   p_joint 8.680000e-03

Joint ci ratio: 1.409555e-01	ci left: 6.489478e-03	ci right 7.482238e-03	k: 767	n:110000
Cons ci ratio: 1.735029e-02	ci left: 3.142052e-01	ci right 3.197135e-01	k: 34865	n:110000
KS ci ratio: 2.391592e-01	ci left: 2.145124e-03	ci right 2.736144e-03	k: 267	n:110000
NOBOX   110000 perm   24 sec   (4649 perm/sec)   p_kst 2.427273e-03   p_cons 3.169545e-01   p_joint 6.972727e-03

Joint ci ratio: 1.136988e-01	ci left: 9.250349e-03	ci right 1.037353e-02	k: 1176	n:120000
Cons ci ratio: 1.660130e-02	ci left: 3.145921e-01	ci right 3.198667e-01	k: 38067	n:120000
KS ci ratio: 2.291204e-01	ci left: 2.154637e-03	ci right 2.719838e-03	k: 291	n:120000
NOBOX   120000 perm   26 sec   (4560 perm/sec)   p_kst 2.425000e-03   p_cons 3.172250e-01   p_joint 9.800000e-03

Joint ci ratio: 9.932969e-02	ci left: 1.125007e-02	ci right 1.243339e-02	k: 1538	n:130000
Cons ci ratio: 1.595606e-02	ci left: 3.145323e-01	ci right 3.195990e-01	k: 41218	n:130000
KS ci ratio: 2.227350e-01	ci left: 2.112260e-03	ci right 2.648784e-03	k: 308	n:130000
NOBOX   130000 perm   29 sec   (4477 perm/sec)   p_kst 2.369231e-03   p_cons 3.170615e-01   p_joint 1.183077e-02

Joint ci ratio: 9.095812e-02	ci left: 1.249696e-02	ci right 1.369476e-02	k: 1832	n:140000
Cons ci ratio: 1.537201e-02	ci left: 3.147268e-01	ci right 3.196093e-01	k: 44403	n:140000
KS ci ratio: 2.185413e-01	ci left: 2.042353e-03	ci right 2.550041e-03	k: 320	n:140000
NOBOX   140000 perm   32 sec   (4394 perm/sec)   p_kst 2.285714e-03   p_cons 3.171643e-01   p_joint 1.308571e-02

Joint ci ratio: 8.393256e-02	ci left: 1.373136e-02	ci right 1.494085e-02	k: 2149	n:150000
Cons ci ratio: 1.423921e-02	ci left: 3.332635e-01	ci right 3.380495e-01	k: 50348	n:150000
KS ci ratio: 2.108022e-01	ci left: 2.057598e-03	ci right 2.548624e-03	k: 344	n:150000
NOBOX   150000 perm   35 sec   (4311 perm/sec)   p_kst 2.293333e-03   p_cons 3.356533e-01   p_joint 1.432667e-02

Joint ci ratio: 8.572559e-02	ci left: 1.234668e-02	ci right 1.345858e-02	k: 2063	n:160000
Cons ci ratio: 1.378369e-02	ci left: 3.334484e-01	ci right 3.380826e-01	k: 53722	n:160000
KS ci ratio: 2.055125e-01	ci left: 2.035632e-03	ci right 2.507694e-03	k: 362	n:160000
NOBOX   160000 perm   38 sec   (4243 perm/sec)   p_kst 2.262500e-03   p_cons 3.357625e-01   p_joint 1.289375e-02

Joint ci ratio: 7.725854e-02	ci left: 1.434097e-02	ci right 1.549919e-02	k: 2535	n:170000
Cons ci ratio: 1.336786e-02	ci left: 3.336606e-01	ci right 3.381568e-01	k: 57104	n:170000
KS ci ratio: 1.992955e-01	ci left: 2.044328e-03	ci right 2.502322e-03	k: 385	n:170000
NOBOX   170000 perm   41 sec   (4178 perm/sec)   p_kst 2.264706e-03   p_cons 3.359059e-01   p_joint 1.491176e-02

Joint ci ratio: 7.672530e-02	ci left: 1.374568e-02	ci right 1.484782e-02	k: 2572	n:180000
Cons ci ratio: 1.299610e-02	ci left: 3.335571e-01	ci right 3.379259e-01	k: 60433	n:180000
KS ci ratio: 1.924353e-01	ci left: 2.078687e-03	ci right 2.526473e-03	k: 413	n:180000
NOBOX   180000 perm   44 sec   (4095 perm/sec)   p_kst 2.294444e-03   p_cons 3.357389e-01   p_joint 1.428889e-02

Joint ci ratio: 7.747507e-02	ci left: 1.277938e-02	ci right 1.381449e-02	k: 2525	n:190000
Cons ci ratio: 1.266104e-02	ci left: 3.332087e-01	ci right 3.374595e-01	k: 63713	n:190000
KS ci ratio: 1.860271e-01	ci left: 2.114689e-03	ci right 2.553348e-03	k: 442	n:190000
NOBOX   190000 perm   47 sec   (4031 perm/sec)   p_kst 2.326316e-03   p_cons 3.353316e-01   p_joint 1.328947e-02

Joint ci ratio: 7.840199e-02	ci left: 1.186075e-02	ci right 1.283346e-02	k: 2468	n:200000
Cons ci ratio: 1.234425e-02	ci left: 3.331261e-01	ci right 3.372687e-01	k: 67039	n:200000
KS ci ratio: 1.790818e-01	ci left: 2.175965e-03	ci right 2.608659e-03	k: 477	n:200000
NOBOX   200000 perm   50 sec   (3970 perm/sec)   p_kst 2.385000e-03   p_cons 3.351950e-01   p_joint 1.234000e-02

Joint ci ratio: 7.749374e-02	ci left: 1.157136e-02	ci right 1.250885e-02	k: 2527	n:210000
Cons ci ratio: 1.204662e-02	ci left: 3.331809e-01	ci right 3.372236e-01	k: 70392	n:210000
KS ci ratio: 1.759827e-01	ci left: 2.149701e-03	ci right 2.568987e-03	k: 494	n:210000
NOBOX   210000 perm   54 sec   (3908 perm/sec)   p_kst 2.352381e-03   p_cons 3.352000e-01   p_joint 1.203333e-02

Joint ci ratio: 8.199636e-02	ci left: 9.860025e-03	ci right 1.070750e-02	k: 2261	n:220000
Cons ci ratio: 1.176546e-02	ci left: 3.333862e-01	ci right 3.373363e-01	k: 73779	n:220000
KS ci ratio: 1.720316e-01	ci left: 2.151980e-03	ci right 2.561308e-03	k: 517	n:220000
NOBOX   220000 perm   57 sec   (3855 perm/sec)   p_kst 2.350000e-03   p_cons 3.353591e-01   p_joint 1.027727e-02

Joint ci ratio: 8.242063e-02	ci left: 9.337539e-03	ci right 1.014445e-02	k: 2239	n:230000
Cons ci ratio: 1.150377e-02	ci left: 3.335486e-01	ci right 3.374121e-01	k: 77160	n:230000
KS ci ratio: 1.684914e-01	ci left: 2.149991e-03	ci right 2.549672e-03	k: 539	n:230000
NOBOX   230000 perm   61 sec   (3800 perm/sec)   p_kst 2.343478e-03   p_cons 3.354783e-01   p_joint 9.734783e-03

Joint ci ratio: 8.145222e-02	ci left: 9.168832e-03	ci right 9.951415e-03	k: 2293	n:240000
Cons ci ratio: 1.125492e-02	ci left: 3.338522e-01	ci right 3.376351e-01	k: 80578	n:240000
KS ci ratio: 1.653086e-01	ci left: 2.144253e-03	ci right 2.534588e-03	k: 560	n:240000
NOBOX   240000 perm   64 sec   (3751 perm/sec)   p_kst 2.333333e-03   p_cons 3.357417e-01   p_joint 9.554167e-03

Joint ci ratio: 8.368703e-02	ci left: 8.335755e-03	ci right 9.067704e-03	k: 2174	n:250000
Cons ci ratio: 1.102332e-02	ci left: 3.340605e-01	ci right 3.377673e-01	k: 83978	n:250000
KS ci ratio: 1.632869e-01	ci left: 2.112177e-03	ci right 2.491509e-03	k: 574	n:250000
NOBOX   250000 perm   68 sec   (3702 perm/sec)   p_kst 2.296000e-03   p_cons 3.359120e-01   p_joint 8.696000e-03

Joint ci ratio: 8.405260e-02	ci left: 7.947304e-03	ci right 8.648339e-03	k: 2156	n:260000
Cons ci ratio: 1.081122e-02	ci left: 3.340153e-01	ci right 3.376499e-01	k: 87316	n:260000
KS ci ratio: 1.612003e-01	ci left: 2.086287e-03	ci right 2.455717e-03	k: 589	n:260000
NOBOX   260000 perm   71 sec   (3649 perm/sec)   p_kst 2.265385e-03   p_cons 3.358308e-01   p_joint 8.292308e-03

Joint ci ratio: 8.272308e-02	ci left: 7.906805e-03	ci right 8.592703e-03	k: 2226	n:270000
Cons ci ratio: 1.060211e-02	ci left: 3.343440e-01	ci right 3.379113e-01	k: 90754	n:270000
KS ci ratio: 1.587976e-01	ci left: 2.073014e-03	ci right 2.434100e-03	k: 607	n:270000
NOBOX   270000 perm   75 sec   (3603 perm/sec)   p_kst 2.248148e-03   p_cons 3.361259e-01   p_joint 8.244444e-03

Joint ci ratio: 8.260460e-02	ci left: 7.648860e-03	ci right 8.311385e-03	k: 2233	n:280000
Cons ci ratio: 1.040701e-02	ci left: 3.345500e-01	ci right 3.380534e-01	k: 94164	n:280000
KS ci ratio: 1.566246e-01	ci left: 2.057294e-03	ci right 2.410278e-03	k: 624	n:280000
NOBOX   280000 perm   79 sec   (3555 perm/sec)   p_kst 2.228571e-03   p_cons 3.363000e-01   p_joint 7.975000e-03

Joint ci ratio: 8.184426e-02	ci left: 7.526936e-03	ci right 8.172612e-03	k: 2275	n:290000
Cons ci ratio: 1.022554e-02	ci left: 3.346011e-01	ci right 3.380436e-01	k: 97533	n:290000
KS ci ratio: 1.528768e-01	ci left: 2.089113e-03	ci right 2.438194e-03	k: 655	n:290000
NOBOX   290000 perm   83 sec   (3509 perm/sec)   p_kst 2.258621e-03   p_cons 3.363207e-01   p_joint 7.844828e-03

Joint ci ratio: 8.229339e-02	ci left: 7.197630e-03	ci right 7.818607e-03	k: 2251	n:300000
Cons ci ratio: 1.005248e-02	ci left: 3.346826e-01	ci right 3.380672e-01	k: 100912	n:300000
KS ci ratio: 1.497137e-01	ci left: 2.109278e-03	ci right 2.453783e-03	k: 683	n:300000
NOBOX   300000 perm   87 sec   (3465 perm/sec)   p_kst 2.276667e-03   p_cons 3.363733e-01   p_joint 7.503333e-03

Joint ci ratio: 7.502702e-02	ci left: 8.401401e-03	ci right 9.059445e-03	k: 2705	n:310000
Cons ci ratio: 9.891001e-03	ci left: 3.346207e-01	ci right 3.379501e-01	k: 104248	n:310000
KS ci ratio: 1.479945e-01	ci left: 2.090926e-03	ci right 2.428164e-03	k: 699	n:310000
NOBOX   310000 perm   91 sec   (3422 perm/sec)   p_kst 2.254839e-03   p_cons 3.362839e-01   p_joint 8.725806e-03

Joint ci ratio: 6.754515e-02	ci left: 1.006367e-02	ci right 1.077024e-02	k: 3332	n:320000
Cons ci ratio: 9.733515e-03	ci left: 3.347254e-01	ci right 3.380025e-01	k: 107636	n:320000
KS ci ratio: 1.452193e-01	ci left: 2.106866e-03	ci right 2.439751e-03	k: 726	n:320000
NOBOX   320000 perm   95 sec   (3381 perm/sec)   p_kst 2.268750e-03   p_cons 3.363625e-01   p_joint 1.041250e-02

Joint ci ratio: 6.674143e-02	ci left: 1.000003e-02	ci right 1.069345e-02	k: 3413	n:330000
Cons ci ratio: 9.580719e-03	ci left: 3.349453e-01	ci right 3.381727e-01	k: 111064	n:330000
KS ci ratio: 1.429752e-01	ci left: 2.110206e-03	ci right 2.438027e-03	k: 749	n:330000
NOBOX   330000 perm   99 sec   (3341 perm/sec)   p_kst 2.269697e-03   p_cons 3.365576e-01   p_joint 1.034242e-02

Joint ci ratio: 6.594663e-02	ci left: 9.945975e-03	ci right 1.062712e-02	k: 3496	n:340000
Cons ci ratio: 9.437880e-03	ci left: 3.350116e-01	ci right 3.381912e-01	k: 114444	n:340000
KS ci ratio: 1.409234e-01	ci left: 2.110549e-03	ci right 2.433322e-03	k: 771	n:340000
NOBOX   340000 perm   103 sec   (3300 perm/sec)   p_kst 2.267647e-03   p_cons 3.366000e-01   p_joint 1.028235e-02

Joint ci ratio: 6.677124e-02	ci left: 9.425702e-03	ci right 1.007960e-02	k: 3412	n:350000
Cons ci ratio: 9.695183e-03	ci left: 3.168282e-01	ci right 3.199177e-01	k: 111430	n:350000
KS ci ratio: 1.390453e-01	ci left: 2.108146e-03	ci right 2.425899e-03	k: 792	n:350000
NOBOX   350000 perm   108 sec   (3252 perm/sec)   p_kst 2.262857e-03   p_cons 3.183714e-01   p_joint 9.748571e-03

Joint ci ratio: 6.438537e-02	ci left: 9.863400e-03	ci right 1.052230e-02	k: 3668	n:360000
Cons ci ratio: 9.558890e-03	ci left: 3.168811e-01	ci right 3.199274e-01	k: 114625	n:360000
KS ci ratio: 1.370716e-01	ci left: 2.111269e-03	ci right 2.424607e-03	k: 815	n:360000
NOBOX   360000 perm   112 sec   (3214 perm/sec)   p_kst 2.263889e-03   p_cons 3.184028e-01   p_joint 1.018889e-02

Joint ci ratio: 6.425297e-02	ci left: 9.639334e-03	ci right 1.028189e-02	k: 3684	n:370000
Cons ci ratio: 9.432652e-03	ci left: 3.167263e-01	ci right 3.197306e-01	k: 117744	n:370000
KS ci ratio: 1.352605e-01	ci left: 2.111641e-03	ci right 2.420561e-03	k: 837	n:370000
NOBOX   370000 perm   117 sec   (3176 perm/sec)   p_kst 2.262162e-03   p_cons 3.182270e-01   p_joint 9.956757e-03

Joint ci ratio: 6.494114e-02	ci left: 9.188828e-03	ci right 9.808160e-03	k: 3608	n:380000
Cons ci ratio: 9.306599e-03	ci left: 3.167980e-01	ci right 3.197627e-01	k: 120946	n:380000
KS ci ratio: 1.334416e-01	ci left: 2.114564e-03	ci right 2.419421e-03	k: 860	n:380000
NOBOX   380000 perm   121 sec   (3142 perm/sec)   p_kst 2.263158e-03   p_cons 3.182789e-01   p_joint 9.494737e-03

Joint ci ratio: 6.526011e-02	ci left: 8.867409e-03	ci right 9.468122e-03	k: 3574	n:390000
Cons ci ratio: 9.186987e-03	ci left: 3.167946e-01	ci right 3.197209e-01	k: 124120	n:390000
KS ci ratio: 1.320691e-01	ci left: 2.104965e-03	ci right 2.405072e-03	k: 878	n:390000
NOBOX   390000 perm   126 sec   (3107 perm/sec)   p_kst 2.251282e-03   p_cons 3.182564e-01   p_joint 9.164103e-03

Joint ci ratio: 6.488418e-02	ci left: 8.748998e-03	ci right 9.338147e-03	k: 3616	n:400000
Cons ci ratio: 9.069259e-03	ci left: 3.169164e-01	ci right 3.198062e-01	k: 127344	n:400000
KS ci ratio: 1.301576e-01	ci left: 2.115209e-03	ci right 2.412075e-03	k: 904	n:400000
NOBOX   400000 perm   130 sec   (3071 perm/sec)   p_kst 2.260000e-03   p_cons 3.183600e-01   p_joint 9.040000e-03

Joint ci ratio: 5.969699e-02	ci left: 1.009652e-02	ci right 1.072018e-02	k: 4266	n:410000
Cons ci ratio: 8.955390e-03	ci left: 3.170594e-01	ci right 3.199139e-01	k: 130579	n:410000
KS ci ratio: 1.288829e-01	ci left: 2.106098e-03	ci right 2.398569e-03	k: 922	n:410000
NOBOX   410000 perm   135 sec   (3040 perm/sec)   p_kst 2.248780e-03   p_cons 3.184854e-01   p_joint 1.040488e-02

Joint ci ratio: 5.910564e-02	ci left: 1.005784e-02	ci right 1.067275e-02	k: 4352	n:420000
Cons ci ratio: 8.850509e-03	ci left: 3.169603e-01	ci right 3.197803e-01	k: 133715	n:420000
KS ci ratio: 1.275092e-01	ci left: 2.102044e-03	ci right 2.390606e-03	k: 942	n:420000
NOBOX   420000 perm   140 sec   (3006 perm/sec)   p_kst 2.242857e-03   p_cons 3.183690e-01   p_joint 1.036190e-02

Joint ci ratio: 6.044558e-02	ci left: 9.393166e-03	ci right 9.980911e-03	k: 4164	n:430000
Cons ci ratio: 8.746977e-03	ci left: 3.169775e-01	ci right 3.197645e-01	k: 136899	n:430000
KS ci ratio: 1.265744e-01	ci left: 2.084682e-03	ci right 2.368604e-03	k: 956	n:430000
NOBOX   430000 perm   144 sec   (2978 perm/sec)   p_kst 2.223256e-03   p_cons 3.183698e-01   p_joint 9.683721e-03

Joint ci ratio: 5.607623e-02	ci left: 1.067597e-02	ci right 1.129413e-02	k: 4832	n:440000
Cons ci ratio: 8.649215e-03	ci left: 3.168828e-01	ci right 3.196377e-01	k: 140034	n:440000
KS ci ratio: 1.326925e-01	ci left: 1.848168e-03	ci right 2.113004e-03	k: 870	n:440000
NOBOX   440000 perm   149 sec   (2951 perm/sec)   p_kst 1.977273e-03   p_cons 3.182591e-01   p_joint 1.098182e-02

Joint ci ratio: 5.556253e-02	ci left: 1.063593e-02	ci right 1.124595e-02	k: 4922	n:450000
Cons ci ratio: 8.550279e-03	ci left: 3.170145e-01	ci right 3.197389e-01	k: 143269	n:450000
KS ci ratio: 1.311210e-01	ci left: 1.852225e-03	ci right 2.114254e-03	k: 891	n:450000
NOBOX   450000 perm   154 sec   (2922 perm/sec)   p_kst 1.980000e-03   p_cons 3.183756e-01   p_joint 1.093778e-02

Joint ci ratio: 5.599034e-02	ci left: 1.024817e-02	ci right 1.084063e-02	k: 4849	n:460000
Cons ci ratio: 8.457499e-03	ci left: 3.169952e-01	ci right 3.196897e-01	k: 146437	n:460000
KS ci ratio: 1.293913e-01	ci left: 1.862433e-03	ci right 2.122164e-03	k: 915	n:460000
NOBOX   460000 perm   159 sec   (2896 perm/sec)   p_kst 1.989130e-03   p_cons 3.183413e-01   p_joint 1.054130e-02

Joint ci ratio: 5.566710e-02	ci left: 1.014970e-02	ci right 1.073296e-02	k: 4906	n:470000
Cons ci ratio: 8.367921e-03	ci left: 3.169641e-01	ci right 3.196296e-01	k: 149599	n:470000
KS ci ratio: 1.280700e-01	ci left: 1.861931e-03	ci right 2.118739e-03	k: 934	n:470000
NOBOX   470000 perm   164 sec   (2869 perm/sec)   p_kst 1.987234e-03   p_cons 3.182957e-01   p_joint 1.043830e-02

Joint ci ratio: 5.715686e-02	ci left: 9.426709e-03	ci right 9.983400e-03	k: 4657	n:480000
Cons ci ratio: 8.283715e-03	ci left: 3.167991e-01	ci right 3.194364e-01	k: 152696	n:480000
KS ci ratio: 1.264568e-01	ci left: 1.871549e-03	ci right 2.126189e-03	k: 958	n:480000
NOBOX   480000 perm   169 sec   (2844 perm/sec)   p_kst 1.995833e-03   p_cons 3.181167e-01   p_joint 9.702083e-03

Joint ci ratio: 5.678835e-02	ci left: 9.357034e-03	ci right 9.905931e-03	k: 4718	n:490000
Cons ci ratio: 8.198682e-03	ci left: 3.168164e-01	ci right 3.194266e-01	k: 155879	n:490000
KS ci ratio: 1.251584e-01	ci left: 1.872886e-03	ci right 2.124897e-03	k: 978	n:490000
NOBOX   490000 perm   174 sec   (2817 perm/sec)   p_kst 1.995918e-03   p_cons 3.181204e-01   p_joint 9.628571e-03

Joint ci ratio: 5.607846e-02	ci left: 9.406513e-03	ci right 9.951191e-03	k: 4838	n:500000
Cons ci ratio: 8.117449e-03	ci left: 3.167672e-01	ci right 3.193509e-01	k: 159029	n:500000
KS ci ratio: 1.239614e-01	ci left: 1.872244e-03	ci right 2.121583e-03	k: 997	n:500000
NOBOX   500000 perm   179 sec   (2792 perm/sec)   p_kst 1.994000e-03   p_cons 3.180580e-01   p_joint 9.676000e-03

Joint ci ratio: 5.350360e-02	ci left: 1.013692e-02	ci right 1.069611e-02	k: 5311	n:510000
Cons ci ratio: 8.036949e-03	ci left: 3.168081e-01	ci right 3.193665e-01	k: 162224	n:510000
KS ci ratio: 1.224968e-01	ci left: 1.881142e-03	ci right 2.128491e-03	k: 1021	n:510000
NOBOX   510000 perm   184 sec   (2766 perm/sec)   p_kst 2.001961e-03   p_cons 3.180863e-01   p_joint 1.041373e-02

Joint ci ratio: 5.371886e-02	ci left: 9.864154e-03	ci right 1.041056e-02	k: 5270	n:520000
Cons ci ratio: 7.958868e-03	ci left: 3.168438e-01	ci right 3.193775e-01	k: 165417	n:520000
KS ci ratio: 1.217848e-01	ci left: 1.867338e-03	ci right 2.111341e-03	k: 1033	n:520000
NOBOX   520000 perm   190 sec   (2740 perm/sec)   p_kst 1.986538e-03   p_cons 3.181096e-01   p_joint 1.013462e-02

Joint ci ratio: 5.429394e-02	ci left: 9.475104e-03	ci right 1.000575e-02	k: 5161	n:530000
Cons ci ratio: 7.884151e-03	ci left: 3.168160e-01	ci right 3.193256e-01	k: 168577	n:530000
KS ci ratio: 1.208538e-01	ci left: 1.861377e-03	ci right 2.102609e-03	k: 1049	n:530000
NOBOX   530000 perm   195 sec   (2713 perm/sec)   p_kst 1.979245e-03   p_cons 3.180698e-01   p_joint 9.737736e-03

Joint ci ratio: 5.395172e-02	ci left: 9.420200e-03	ci right 9.944340e-03	k: 5227	n:540000
Cons ci ratio: 7.814435e-03	ci left: 3.166266e-01	ci right 3.191124e-01	k: 171649	n:540000
KS ci ratio: 1.192731e-01	ci left: 1.877203e-03	ci right 2.117080e-03	k: 1077	n:540000
NOBOX   540000 perm   201 sec   (2688 perm/sec)   p_kst 1.994444e-03   p_cons 3.178685e-01   p_joint 9.679630e-03

Joint ci ratio: 5.384226e-02	ci left: 9.288367e-03	ci right 9.804091e-03	k: 5249	n:550000
Cons ci ratio: 7.743059e-03	ci left: 3.166385e-01	ci right 3.191016e-01	k: 174828	n:550000
KS ci ratio: 1.182898e-01	ci left: 1.874826e-03	ci right 2.112287e-03	k: 1095	n:550000
NOBOX   550000 perm   206 sec   (2665 perm/sec)   p_kst 1.990909e-03   p_cons 3.178691e-01   p_joint 9.543636e-03

Joint ci ratio: 5.402899e-02	ci left: 9.060818e-03	ci right 9.565706e-03	k: 5214	n:560000
Cons ci ratio: 7.674426e-03	ci left: 3.166037e-01	ci right 3.190446e-01	k: 177981	n:560000
KS ci ratio: 1.173832e-01	ci left: 1.870810e-03	ci right 2.105819e-03	k: 1112	n:560000
NOBOX   560000 perm   212 sec   (2642 perm/sec)   p_kst 1.985714e-03   p_cons 3.178232e-01   p_joint 9.310714e-03

Joint ci ratio: 5.384619e-02	ci left: 8.964151e-03	ci right 9.461910e-03	k: 5250	n:570000
Cons ci ratio: 7.607186e-03	ci left: 3.165930e-01	ci right 3.190123e-01	k: 181147	n:570000
KS ci ratio: 1.163426e-01	ci left: 1.872050e-03	ci right 2.104988e-03	k: 1132	n:570000
NOBOX   570000 perm   218 sec   (2619 perm/sec)   p_kst 1.985965e-03   p_cons 3.178018e-01   p_joint 9.210526e-03

Joint ci ratio: 5.440742e-02	ci left: 8.629271e-03	ci right 9.113585e-03	k: 5144	n:580000
Cons ci ratio: 7.540123e-03	ci left: 3.166724e-01	ci right 3.190708e-01	k: 184365	n:580000
KS ci ratio: 1.152790e-01	ci left: 1.874932e-03	ci right 2.105950e-03	k: 1153	n:580000
NOBOX   580000 perm   223 sec   (2596 perm/sec)   p_kst 1.987931e-03   p_cons 3.178707e-01   p_joint 8.868966e-03

Joint ci ratio: 5.496935e-02	ci left: 8.310786e-03	ci right 8.782195e-03	k: 5041	n:590000
Cons ci ratio: 7.474628e-03	ci left: 3.167593e-01	ci right 3.191374e-01	k: 187589	n:590000
KS ci ratio: 1.145375e-01	ci left: 1.867846e-03	ci right 2.096410e-03	k: 1168	n:590000
NOBOX   590000 perm   229 sec   (2574 perm/sec)   p_kst 1.979661e-03   p_cons 3.179475e-01   p_joint 8.544068e-03

Joint ci ratio: 5.591481e-02	ci left: 7.897751e-03	ci right 8.353685e-03	k: 4874	n:600000
Cons ci ratio: 7.414114e-03	ci left: 3.166502e-01	ci right 3.190082e-01	k: 190697	n:600000
KS ci ratio: 1.138101e-01	ci left: 1.861001e-03	ci right 2.087184e-03	k: 1183	n:600000
NOBOX   600000 perm   235 sec   (2551 perm/sec)   p_kst 1.971667e-03   p_cons 3.178283e-01   p_joint 8.123333e-03

Joint ci ratio: 5.540531e-02	ci left: 7.913769e-03	ci right 8.366331e-03	k: 4964	n:610000
Cons ci ratio: 7.350960e-03	ci left: 3.167855e-01	ci right 3.191244e-01	k: 193952	n:610000
KS ci ratio: 1.127671e-01	ci left: 1.865537e-03	ci right 2.090055e-03	k: 1205	n:610000
NOBOX   610000 perm   241 sec   (2530 perm/sec)   p_kst 1.975410e-03   p_cons 3.179541e-01   p_joint 8.137705e-03

Joint ci ratio: 5.537526e-02	ci left: 7.795657e-03	ci right 8.241216e-03	k: 4970	n:620000
Cons ci ratio: 7.292130e-03	ci left: 3.167538e-01	ci right 3.190737e-01	k: 197106	n:620000
KS ci ratio: 1.116157e-01	ci left: 1.874639e-03	ci right 2.097798e-03	k: 1230	n:620000
NOBOX   620000 perm   247 sec   (2511 perm/sec)   p_kst 1.983871e-03   p_cons 3.179129e-01   p_joint 8.016129e-03

Joint ci ratio: 5.348618e-02	ci left: 8.227790e-03	ci right 8.681510e-03	k: 5325	n:630000
Cons ci ratio: 7.234664e-03	ci left: 3.167248e-01	ci right 3.190261e-01	k: 200261	n:630000
KS ci ratio: 1.109422e-01	ci left: 1.868029e-03	ci right 2.088972e-03	k: 1245	n:630000
NOBOX   630000 perm   253 sec   (2491 perm/sec)   p_kst 1.976190e-03   p_cons 3.178746e-01   p_joint 8.452381e-03

Joint ci ratio: 5.312384e-02	ci left: 8.211771e-03	ci right 8.661446e-03	k: 5398	n:640000
Cons ci ratio: 7.178303e-03	ci left: 3.167108e-01	ci right 3.189940e-01	k: 203425	n:640000
KS ci ratio: 1.101496e-01	ci left: 1.866188e-03	ci right 2.085234e-03	k: 1263	n:640000
NOBOX   640000 perm   259 sec   (2471 perm/sec)   p_kst 1.973437e-03   p_cons 3.178516e-01   p_joint 8.434375e-03

Joint ci ratio: 5.272020e-02	ci left: 8.211438e-03	ci right 8.657575e-03	k: 5481	n:650000
Cons ci ratio: 7.122303e-03	ci left: 3.167542e-01	ci right 3.190198e-01	k: 206626	n:650000
KS ci ratio: 1.090758e-01	ci left: 1.874885e-03	ci right 2.092668e-03	k: 1288	n:650000
NOBOX   650000 perm   265 sec   (2452 perm/sec)   p_kst 1.981538e-03   p_cons 3.178862e-01   p_joint 8.432308e-03

Joint ci ratio: 5.382352e-02	ci left: 7.758080e-03	ci right 8.188680e-03	k: 5261	n:660000
Cons ci ratio: 7.067199e-03	ci left: 3.168205e-01	ci right 3.190690e-01	k: 209843	n:660000
KS ci ratio: 1.082807e-01	ci left: 1.874483e-03	ci right 2.090532e-03	k: 1307	n:660000
NOBOX   660000 perm   271 sec   (2432 perm/sec)   p_kst 1.980303e-03   p_cons 3.179439e-01   p_joint 7.971212e-03

Joint ci ratio: 5.547635e-02	ci left: 7.191753e-03	ci right 7.603569e-03	k: 4955	n:670000
Cons ci ratio: 7.015696e-03	ci left: 3.167403e-01	ci right 3.189717e-01	k: 212963	n:670000
KS ci ratio: 1.073812e-01	ci left: 1.878456e-03	ci right 2.093050e-03	k: 1329	n:670000
NOBOX   670000 perm   278 sec   (2412 perm/sec)   p_kst 1.983582e-03   p_cons 3.178552e-01   p_joint 7.395522e-03

Joint ci ratio: 5.174477e-02	ci left: 8.152502e-03	ci right 8.586996e-03	k: 5690	n:680000
Cons ci ratio: 6.963318e-03	ci left: 3.167859e-01	ci right 3.190009e-01	k: 216167	n:680000
KS ci ratio: 1.067414e-01	ci left: 1.873731e-03	ci right 2.086430e-03	k: 1345	n:680000
NOBOX   680000 perm   284 sec   (2392 perm/sec)   p_kst 1.977941e-03   p_cons 3.178926e-01   p_joint 8.367647e-03

Joint ci ratio: 5.016342e-02	ci left: 8.552348e-03	ci right 8.993820e-03	k: 6052	n:690000
Cons ci ratio: 6.911958e-03	ci left: 3.168390e-01	ci right 3.190379e-01	k: 219377	n:690000
KS ci ratio: 1.059571e-01	ci left: 1.874790e-03	ci right 2.085948e-03	k: 1365	n:690000
NOBOX   690000 perm   291 sec   (2373 perm/sec)   p_kst 1.978261e-03   p_cons 3.179377e-01   p_joint 8.771014e-03

Joint ci ratio: 4.986006e-02	ci left: 8.534562e-03	ci right 8.972376e-03	k: 6126	n:700000
Cons ci ratio: 6.861921e-03	ci left: 3.168777e-01	ci right 3.190610e-01	k: 222578	n:700000
KS ci ratio: 1.053423e-01	ci left: 1.870260e-03	ci right 2.079610e-03	k: 1381	n:700000
NOBOX   700000 perm   297 sec   (2355 perm/sec)   p_kst 1.972857e-03   p_cons 3.179686e-01   p_joint 8.751429e-03

Joint ci ratio: 4.949776e-02	ci left: 8.539543e-03	ci right 8.974339e-03	k: 6216	n:710000
Cons ci ratio: 6.813928e-03	ci left: 3.168535e-01	ci right 3.190212e-01	k: 225735	n:710000
KS ci ratio: 1.047755e-01	ci left: 1.864490e-03	ci right 2.072002e-03	k: 1396	n:710000
NOBOX   710000 perm   304 sec   (2336 perm/sec)   p_kst 1.966197e-03   p_cons 3.179366e-01   p_joint 8.754930e-03

Joint ci ratio: 5.007681e-02	ci left: 8.227510e-03	ci right 8.651460e-03	k: 6075	n:720000
Cons ci ratio: 6.769096e-03	ci left: 3.166912e-01	ci right 3.188436e-01	k: 228792	n:720000
KS ci ratio: 1.039600e-01	ci left: 1.868352e-03	ci right 2.074576e-03	k: 1418	n:720000
NOBOX   720000 perm   311 sec   (2318 perm/sec)   p_kst 1.969444e-03   p_cons 3.177667e-01   p_joint 8.437500e-03

Joint ci ratio: 4.972608e-02	ci left: 8.231143e-03	ci right 8.652224e-03	k: 6161	n:730000
Cons ci ratio: 6.721292e-03	ci left: 3.167812e-01	ci right 3.189189e-01	k: 232030	n:730000
KS ci ratio: 1.034152e-01	ci left: 1.862773e-03	ci right 2.067238e-03	k: 1433	n:730000
NOBOX   730000 perm   317 sec   (2301 perm/sec)   p_kst 1.963014e-03   p_cons 3.178493e-01   p_joint 8.439726e-03

Joint ci ratio: 4.945851e-02	ci left: 8.209327e-03	ci right 8.626968e-03	k: 6228	n:740000
Cons ci ratio: 6.676920e-03	ci left: 3.167108e-01	ci right 3.188339e-01	k: 235151	n:740000
KS ci ratio: 1.025602e-01	ci left: 1.869198e-03	ci right 2.072570e-03	k: 1457	n:740000
NOBOX   740000 perm   324 sec   (2283 perm/sec)   p_kst 1.968919e-03   p_cons 3.177716e-01   p_joint 8.416216e-03

Joint ci ratio: 4.914015e-02	ci left: 8.206537e-03	ci right 8.621273e-03	k: 6309	n:750000
Cons ci ratio: 6.633395e-03	ci left: 3.166437e-01	ci right 3.187524e-01	k: 238273	n:750000
KS ci ratio: 1.020370e-01	ci left: 1.863763e-03	ci right 2.065448e-03	k: 1472	n:750000
NOBOX   750000 perm   331 sec   (2266 perm/sec)   p_kst 1.962667e-03   p_cons 3.176973e-01   p_joint 8.412000e-03

Joint ci ratio: 4.896324e-02	ci left: 8.158336e-03	ci right 8.569109e-03	k: 6355	n:760000
Cons ci ratio: 6.589729e-03	ci left: 3.166428e-01	ci right 3.187376e-01	k: 241444	n:760000
KS ci ratio: 1.014534e-01	ci left: 1.861039e-03	ci right 2.061208e-03	k: 1489	n:760000
NOBOX   760000 perm   338 sec   (2248 perm/sec)   p_kst 1.959211e-03   p_cons 3.176895e-01   p_joint 8.361842e-03

Joint ci ratio: 5.051557e-02	ci left: 7.563672e-03	ci right 7.956928e-03	k: 5974	n:770000
Cons ci ratio: 6.546346e-03	ci left: 3.166796e-01	ci right 3.187607e-01	k: 244644	n:770000
KS ci ratio: 1.009468e-01	ci left: 1.855857e-03	ci right 2.054413e-03	k: 1504	n:770000
NOBOX   770000 perm   345 sec   (2232 perm/sec)   p_kst 1.953247e-03   p_cons 3.177195e-01   p_joint 7.758442e-03

Joint ci ratio: 5.044583e-02	ci left: 7.488214e-03	ci right 7.876994e-03	k: 5991	n:780000
Cons ci ratio: 6.503385e-03	ci left: 3.167437e-01	ci right 3.188115e-01	k: 247866	n:780000
KS ci ratio: 1.002497e-01	ci left: 1.858310e-03	ci right 2.055674e-03	k: 1525	n:780000
NOBOX   780000 perm   352 sec   (2216 perm/sec)   p_kst 1.955128e-03   p_cons 3.177769e-01   p_joint 7.680769e-03

Joint ci ratio: 5.009153e-02	ci left: 7.499670e-03	ci right 7.886231e-03	k: 6076	n:790000
Cons ci ratio: 6.461863e-03	ci left: 3.167657e-01	ci right 3.188205e-01	k: 251056	n:790000
KS ci ratio: 9.969613e-02	ci left: 1.855768e-03	ci right 2.051710e-03	k: 1542	n:790000
NOBOX   790000 perm   359 sec   (2199 perm/sec)   p_kst 1.951899e-03   p_cons 3.177924e-01   p_joint 7.691139e-03

Outputting figure to mutsig2_images.part000000000115/NOBOX.3_1757_790000_0.0019519_0.31779_0.0076911.png
                gene_name: NOBOX
               theta_stop: 0.100 
                    nperm: 790000 
                     p_ks: 0.0020 
        ci_ks_bounds_left: 0.0019 
       ci_ks_bounds_right: 0.0021 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.0077 
     ci_joint_bounds_left: 0.0075 
    ci_joint_bounds_right: 0.0079 

Current progress: 45 percent done.
NOD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.201022e-02	ci left: 7.518078e-01	ci right 7.686403e-01	k: 7603	n:10000
Cons ci ratio: 4.537380e-02	ci left: 4.175767e-01	ci right 4.370657e-01	k: 4273	n:10000
KS ci ratio: 2.419615e-02	ci left: 7.152252e-01	ci right 7.328441e-01	k: 7241	n:10000
NOD1   10000 perm   2 sec   (5968 perm/sec)   p_kst 7.241000e-01   p_cons 4.273000e-01   p_joint 7.603000e-01

Outputting figure to mutsig2_images.part000000000115/NOD1.4_2906_10000_0.7241_0.4273_0.7603.png
                gene_name: NOD1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 47 percent done.
NISCH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.452096e-02	ci left: 2.608218e-01	ci right 2.783127e-01	k: 2695	n:10000
Cons ci ratio: 6.289034e-02	ci left: 2.709178e-01	ci right 2.886106e-01	k: 2797	n:10000
KS ci ratio: 5.539147e-02	ci left: 3.243584e-01	ci right 3.429386e-01	k: 3336	n:10000
NISCH   10000 perm   2 sec   (5311 perm/sec)   p_kst 3.336000e-01   p_cons 2.797000e-01   p_joint 2.695000e-01

Outputting figure to mutsig2_images.part000000000115/NISCH.3_4599_10000_0.3336_0.2797_0.2695.png
                gene_name: NISCH
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 49 percent done.
NKAP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.021289e-03	ci left: 9.654135e-01	ci right 9.723098e-01	k: 9690	n:10000
Cons ci ratio: 3.200320e-02	ci left: 5.903202e-01	ci right 6.096215e-01	k: 6000	n:10000
KS ci ratio: 2.245679e-02	ci left: 7.443233e-01	ci right 7.613292e-01	k: 7529	n:10000
NKAP   10000 perm   1 sec   (6706 perm/sec)   p_kst 7.529000e-01   p_cons 6.000000e-01   p_joint 9.690000e-01

Outputting figure to mutsig2_images.part000000000115/NKAP.3_1284_10000_0.7529_0.6_0.969.png
                gene_name: NKAP
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.97 

Current progress: 51 percent done.
NKTR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.831909e-02	ci left: 3.020326e-01	ci right 3.202776e-01	k: 3111	n:10000
Cons ci ratio: 1.709095e-02	ci left: 8.329712e-01	ci right 8.474300e-01	k: 8403	n:10000
KS ci ratio: 8.652199e-02	ci left: 1.628811e-01	ci right 1.777115e-01	k: 1702	n:10000
NKTR   10000 perm   2 sec   (5451 perm/sec)   p_kst 1.702000e-01   p_cons 8.403000e-01   p_joint 3.111000e-01

Outputting figure to mutsig2_images.part000000000115/NKTR.3_4453_10000_0.1702_0.8403_0.3111.png
                gene_name: NKTR
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 53 percent done.
NKX3-2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.296109e-01	ci left: 7.834394e-02	ci right 8.929994e-02	k: 837	n:10000
Cons ci ratio: 5.122836e-03	ci left: 9.805929e-01	ci right 9.857201e-01	k: 9833	n:10000
KS ci ratio: 3.017006e-01	ci left: 1.409482e-02	ci right 1.919237e-02	k: 165	n:10000
NKX3-2   10000 perm   1 sec   (6817 perm/sec)   p_kst 1.650000e-02   p_cons 9.833000e-01   p_joint 8.370000e-02

Joint ci ratio: 1.035587e-01	ci left: 6.337790e-02	ci right 7.034867e-02	k: 1336	n:20000
Cons ci ratio: 3.923802e-03	ci left: 9.783825e-01	ci right 9.822761e-01	k: 19608	n:20000
KS ci ratio: 2.201831e-01	ci left: 1.388097e-02	ci right 1.736192e-02	k: 311	n:20000
NKX3-2   20000 perm   3 sec   (5993 perm/sec)   p_kst 1.555000e-02   p_cons 9.804000e-01   p_joint 6.680000e-02

Joint ci ratio: 1.083574e-01	ci left: 3.953067e-02	ci right 4.409193e-02	k: 1253	n:30000
Cons ci ratio: 3.163477e-03	ci left: 9.792524e-01	ci right 9.823868e-01	k: 29426	n:30000
KS ci ratio: 1.720960e-01	ci left: 1.553552e-02	ci right 1.849242e-02	k: 509	n:30000
NKX3-2   30000 perm   5 sec   (5742 perm/sec)   p_kst 1.696667e-02   p_cons 9.808667e-01   p_joint 4.176667e-02

Joint ci ratio: 7.302323e-02	ci left: 6.474085e-02	ci right 6.967221e-02	k: 2687	n:40000
Cons ci ratio: 2.585069e-03	ci left: 9.816073e-01	ci right 9.841719e-01	k: 39317	n:40000
KS ci ratio: 1.508558e-01	ci left: 1.534652e-02	ci right 1.787436e-02	k: 663	n:40000
NKX3-2   40000 perm   7 sec   (5589 perm/sec)   p_kst 1.657500e-02   p_cons 9.829250e-01   p_joint 6.717500e-02

Joint ci ratio: 7.002358e-02	ci left: 5.691100e-02	ci right 6.106038e-02	k: 2948	n:50000
Cons ci ratio: 2.267765e-03	ci left: 9.824069e-01	ci right 9.846564e-01	k: 49178	n:50000
KS ci ratio: 1.361866e-01	ci left: 1.518891e-02	ci right 1.742776e-02	k: 814	n:50000
NKX3-2   50000 perm   9 sec   (5433 perm/sec)   p_kst 1.628000e-02   p_cons 9.835600e-01   p_joint 5.896000e-02

Joint ci ratio: 7.269972e-02	ci left: 4.453399e-02	ci right 4.791008e-02	k: 2772	n:60000
Cons ci ratio: 2.078066e-03	ci left: 9.823800e-01	ci right 9.844396e-01	k: 59006	n:60000
KS ci ratio: 1.249721e-01	ci left: 1.512420e-02	ci right 1.715632e-02	k: 967	n:60000
NKX3-2   60000 perm   11 sec   (5285 perm/sec)   p_kst 1.611667e-02   p_cons 9.834333e-01   p_joint 4.620000e-02

Joint ci ratio: 8.299326e-02	ci left: 2.960241e-02	ci right 3.217953e-02	k: 2161	n:70000
Cons ci ratio: 1.950857e-03	ci left: 9.819856e-01	ci right 9.839169e-01	k: 68808	n:70000
KS ci ratio: 1.154596e-01	ci left: 1.526386e-02	ci right 1.714798e-02	k: 1133	n:70000
NKX3-2   70000 perm   14 sec   (5179 perm/sec)   p_kst 1.618571e-02   p_cons 9.829714e-01   p_joint 3.087143e-02

Joint ci ratio: 7.492041e-02	ci left: 3.184648e-02	ci right 3.433753e-02	k: 2646	n:80000
Cons ci ratio: 1.821168e-03	ci left: 9.821187e-01	ci right 9.839210e-01	k: 78643	n:80000
KS ci ratio: 1.099148e-01	ci left: 1.478911e-02	ci right 1.652127e-02	k: 1251	n:80000
NKX3-2   80000 perm   16 sec   (5080 perm/sec)   p_kst 1.563750e-02   p_cons 9.830375e-01   p_joint 3.307500e-02

Joint ci ratio: 6.190260e-02	ci left: 4.133358e-02	ci right 4.398488e-02	k: 3838	n:90000
Cons ci ratio: 1.715447e-03	ci left: 9.822024e-01	ci right 9.838996e-01	k: 88476	n:90000
KS ci ratio: 1.029807e-01	ci left: 1.502787e-02	ci right 1.667022e-02	k: 1425	n:90000
NKX3-2   90000 perm   18 sec   (4994 perm/sec)   p_kst 1.583333e-02   p_cons 9.830667e-01   p_joint 4.264444e-02

Joint ci ratio: 6.797021e-02	ci left: 3.109478e-02	ci right 3.329246e-02	k: 3218	n:100000
Cons ci ratio: 1.624270e-03	ci left: 9.823126e-01	ci right 9.839192e-01	k: 98313	n:100000
KS ci ratio: 9.815171e-02	ci left: 1.492883e-02	ci right 1.647944e-02	k: 1569	n:100000
NKX3-2   100000 perm   20 sec   (4900 perm/sec)   p_kst 1.569000e-02   p_cons 9.831300e-01   p_joint 3.218000e-02

Outputting figure to mutsig2_images.part000000000115/NKX3-2.3_1010_100000_0.01569_0.98313_0.03218.png
                gene_name: NKX3-2
               theta_stop: 0.098 
                    nperm: 100000 
                     p_ks: 0.016 
        ci_ks_bounds_left: 0.015 
       ci_ks_bounds_right: 0.016 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.032 
     ci_joint_bounds_left: 0.031 
    ci_joint_bounds_right: 0.033 

Current progress: 55 percent done.
NLGN4Y
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.997575e-02	ci left: 1.858959e-01	ci right 2.014830e-01	k: 1936	n:10000
Cons ci ratio: 2.655002e-02	ci left: 6.762965e-01	ci right 6.945953e-01	k: 6855	n:10000
KS ci ratio: 1.209147e-01	ci left: 8.932164e-02	ci right 1.009155e-01	k: 950	n:10000
NLGN4Y   10000 perm   2 sec   (6035 perm/sec)   p_kst 9.500000e-02   p_cons 6.855000e-01   p_joint 1.936000e-01

Joint ci ratio: 5.389127e-02	ci left: 2.035311e-01	ci right 2.148536e-01	k: 4183	n:20000
Cons ci ratio: 1.853090e-02	ci left: 6.846441e-01	ci right 6.975003e-01	k: 13822	n:20000
KS ci ratio: 8.343253e-02	ci left: 9.523778e-02	ci right 1.035791e-01	k: 1987	n:20000
NLGN4Y   20000 perm   4 sec   (5465 perm/sec)   p_kst 9.935000e-02   p_cons 6.911000e-01   p_joint 2.091500e-01

Outputting figure to mutsig2_images.part000000000115/NLGN4Y.3_2625_20000_0.09935_0.6911_0.20915.png
                gene_name: NLGN4Y
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.099 
        ci_ks_bounds_left: 0.095 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 57 percent done.
NLRC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.913147e-02	ci left: 4.909512e-01	ci right 5.106484e-01	k: 5008	n:10000
Cons ci ratio: 4.674428e-02	ci left: 4.031269e-01	ci right 4.225239e-01	k: 4128	n:10000
KS ci ratio: 5.447022e-02	ci left: 3.318056e-01	ci right 3.504870e-01	k: 3411	n:10000
NLRC3   10000 perm   2 sec   (5883 perm/sec)   p_kst 3.411000e-01   p_cons 4.128000e-01   p_joint 5.008000e-01

Outputting figure to mutsig2_images.part000000000115/NLRC3.3_3267_10000_0.3411_0.4128_0.5008.png
                gene_name: NLRC3
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 59 percent done.
NLRP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.280271e-02	ci left: 1.443289e-01	ci right 1.584748e-01	k: 1513	n:10000
Cons ci ratio: 1.699685e-01	ci left: 4.619368e-02	ci right 5.487054e-02	k: 504	n:10000
KS ci ratio: 1.115117e-02	ci left: 9.198691e-01	ci right 9.302817e-01	k: 9252	n:10000
NLRP2   10000 perm   2 sec   (5542 perm/sec)   p_kst 9.252000e-01   p_cons 5.040000e-02   p_joint 1.513000e-01

Joint ci ratio: 4.809938e-02	ci left: 2.432667e-01	ci right 2.553063e-01	k: 4985	n:20000
Cons ci ratio: 1.113996e-01	ci left: 5.504340e-02	ci right 6.158575e-02	k: 1165	n:20000
KS ci ratio: 7.954170e-03	ci left: 9.201893e-01	ci right 9.275869e-01	k: 18479	n:20000
NLRP2   20000 perm   4 sec   (5177 perm/sec)   p_kst 9.239500e-01   p_cons 5.825000e-02   p_joint 2.492500e-01

Joint ci ratio: 4.436899e-02	ci left: 2.018652e-01	ci right 2.110584e-01	k: 6193	n:30000
Cons ci ratio: 9.205290e-02	ci left: 5.437022e-02	ci right 5.964931e-02	k: 1709	n:30000
KS ci ratio: 6.547032e-03	ci left: 9.197219e-01	ci right 9.257959e-01	k: 27684	n:30000
NLRP2   30000 perm   6 sec   (4983 perm/sec)   p_kst 9.228000e-01   p_cons 5.696667e-02   p_joint 2.064333e-01

Outputting figure to mutsig2_images.part000000000115/NLRP2.3_3237_30000_0.9228_0.056967_0.20643.png
                gene_name: NLRP2
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.057 
      ci_cons_bounds_left: 0.054 
     ci_cons_bounds_right: 0.060 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 61 percent done.
NLRP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.630407e-02	ci left: 6.803271e-01	ci right 6.985625e-01	k: 6895	n:10000
KS ci ratio: 1.301967e-02	ci left: 8.946712e-01	ci right 9.064942e-01	k: 9007	n:10000
NLRP6   10000 perm   2 sec   (5966 perm/sec)   p_kst 9.007000e-01   p_cons 6.895000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000115/NLRP6.3_2710_10000_0.9007_0.6895_1.png
                gene_name: NLRP6
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 63 percent done.
NLRX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.795085e-02	ci left: 3.908763e-01	ci right 4.101817e-01	k: 4005	n:10000
KS ci ratio: 3.143295e-02	ci left: 5.989536e-01	ci right 6.181831e-01	k: 6086	n:10000
NLRX1   10000 perm   2 sec   (6110 perm/sec)   p_kst 6.086000e-01   p_cons 4.005000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000115/NLRX1.3_3128_10000_0.6086_0.4005_1.png
                gene_name: NLRX1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
NMBR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.131817e-01	ci left: 1.010066e-01	ci right 1.132234e-01	k: 1070	n:10000
Cons ci ratio: 1.066050e-01	ci left: 1.127155e-01	ci right 1.255073e-01	k: 1190	n:10000
KS ci ratio: 8.843771e-02	ci left: 1.568896e-01	ci right 1.715066e-01	k: 1641	n:10000
NMBR   10000 perm   2 sec   (6254 perm/sec)   p_kst 1.641000e-01   p_cons 1.190000e-01   p_joint 1.070000e-01

Joint ci ratio: 7.937067e-02	ci left: 1.043692e-01	ci right 1.130449e-01	k: 2173	n:20000
Cons ci ratio: 7.556267e-02	ci left: 1.141006e-01	ci right 1.231106e-01	k: 2371	n:20000
KS ci ratio: 6.364054e-02	ci left: 1.543517e-01	ci right 1.645475e-01	k: 3188	n:20000
NMBR   20000 perm   3 sec   (5759 perm/sec)   p_kst 1.594000e-01   p_cons 1.185500e-01   p_joint 1.086500e-01

Outputting figure to mutsig2_images.part000000000115/NMBR.3_1185_20000_0.1594_0.11855_0.10865.png
                gene_name: NMBR
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 67 percent done.
NMD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.508989e-03	ci left: 9.398315e-01	ci right 9.489074e-01	k: 9445	n:10000
Cons ci ratio: 2.011987e-02	ci left: 7.834036e-01	ci right 7.994263e-01	k: 7915	n:10000
KS ci ratio: 1.709732e-02	ci left: 8.328694e-01	ci right 8.473319e-01	k: 8402	n:10000
NMD3   10000 perm   2 sec   (6575 perm/sec)   p_kst 8.402000e-01   p_cons 7.915000e-01   p_joint 9.445000e-01

Outputting figure to mutsig2_images.part000000000115/NMD3.3_1572_10000_0.8402_0.7915_0.9445.png
                gene_name: NMD3
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 69 percent done.
NME7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.625897e-02	ci left: 2.009680e-01	ci right 2.170019e-01	k: 2089	n:10000
Cons ci ratio: 7.439508e-02	ci left: 2.091515e-01	ci right 2.254135e-01	k: 2172	n:10000
KS ci ratio: 7.984796e-02	ci left: 1.863882e-01	ci right 2.019904e-01	k: 1941	n:10000
NME7   10000 perm   2 sec   (6658 perm/sec)   p_kst 1.941000e-01   p_cons 2.172000e-01   p_joint 2.089000e-01

Outputting figure to mutsig2_images.part000000000115/NME7.3_1179_10000_0.1941_0.2172_0.2089.png
                gene_name: NME7
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 71 percent done.
NODAL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.116972e-02	ci left: 6.029702e-01	ci right 6.221641e-01	k: 6126	n:10000
Cons ci ratio: 4.907736e-02	ci left: 3.798263e-01	ci right 3.990382e-01	k: 3894	n:10000
KS ci ratio: 3.629906e-02	ci left: 5.284690e-01	ci right 5.481087e-01	k: 5383	n:10000
NODAL   10000 perm   2 sec   (6646 perm/sec)   p_kst 5.383000e-01   p_cons 3.894000e-01   p_joint 6.126000e-01

Outputting figure to mutsig2_images.part000000000115/NODAL.3_1056_10000_0.5383_0.3894_0.6126.png
                gene_name: NODAL
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 73 percent done.
NIT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.657006e-02	ci left: 5.247648e-01	ci right 5.444151e-01	k: 5346	n:10000
Cons ci ratio: 5.418072e-02	ci left: 3.341893e-01	ci right 3.529019e-01	k: 3435	n:10000
KS ci ratio: 5.070478e-02	ci left: 3.645043e-01	ci right 3.835691e-01	k: 3740	n:10000
NIT2   10000 perm   1 sec   (6950 perm/sec)   p_kst 3.740000e-01   p_cons 3.435000e-01   p_joint 5.346000e-01

Outputting figure to mutsig2_images.part000000000115/NIT2.2_871_10000_0.374_0.3435_0.5346.png
                gene_name: NIT2
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 75 percent done.
NKAPL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.496648e-03	ci left: 9.610001e-01	ci right 9.683260e-01	k: 9648	n:10000
KS ci ratio: 2.830889e-02	ci left: 6.478024e-01	ci right 6.665060e-01	k: 6572	n:10000
NKAPL   10000 perm   1 sec   (7167 perm/sec)   p_kst 6.572000e-01   p_cons 9.648000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000115/NKAPL.2_1213_10000_0.6572_0.9648_1.png
                gene_name: NKAPL
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
NKD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.415632e-03	ci left: 9.706895e-01	ci right 9.770303e-01	k: 9740	n:10000
Cons ci ratio: 3.012213e-02	ci left: 6.191440e-01	ci right 6.381810e-01	k: 6287	n:10000
KS ci ratio: 3.605879e-02	ci left: 5.317732e-01	ci right 5.514025e-01	k: 5416	n:10000
NKD1   10000 perm   2 sec   (6500 perm/sec)   p_kst 5.416000e-01   p_cons 6.287000e-01   p_joint 9.740000e-01

Outputting figure to mutsig2_images.part000000000115/NKD1.2_1453_10000_0.5416_0.6287_0.974.png
                gene_name: NKD1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 78 percent done.
NKD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.770450e-02	ci left: 8.231021e-01	ci right 8.379049e-01	k: 8306	n:10000
Cons ci ratio: 4.142033e-02	ci left: 4.625744e-01	ci right 4.822417e-01	k: 4724	n:10000
KS ci ratio: 3.014148e-02	ci left: 6.188425e-01	ci right 6.378826e-01	k: 6284	n:10000
NKD2   10000 perm   1 sec   (6861 perm/sec)   p_kst 6.284000e-01   p_cons 4.724000e-01   p_joint 8.306000e-01

Outputting figure to mutsig2_images.part000000000115/NKD2.2_1396_10000_0.6284_0.4724_0.8306.png
                gene_name: NKD2
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 80 percent done.
NKG7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.202867e-01	ci left: 9.019709e-02	ci right 1.018395e-01	k: 959	n:10000
Cons ci ratio: 1.483260e-02	ci left: 8.681543e-01	ci right 8.812266e-01	k: 8748	n:10000
KS ci ratio: 3.265993e-01	ci left: 1.188149e-02	ci right 1.660771e-02	k: 141	n:10000
NKG7   10000 perm   1 sec   (7569 perm/sec)   p_kst 1.410000e-02   p_cons 8.748000e-01   p_joint 9.590000e-02

Joint ci ratio: 8.081697e-02	ci left: 1.009805e-01	ci right 1.095346e-01	k: 2104	n:20000
Cons ci ratio: 1.031421e-02	ci left: 8.737905e-01	ci right 8.828992e-01	k: 17568	n:20000
KS ci ratio: 2.364985e-01	ci left: 1.194666e-02	ci right 1.519704e-02	k: 270	n:20000
NKG7   20000 perm   3 sec   (6686 perm/sec)   p_kst 1.350000e-02   p_cons 8.784000e-01   p_joint 1.052000e-01

Joint ci ratio: 5.657914e-02	ci left: 1.340169e-01	ci right 1.418534e-01	k: 4137	n:30000
Cons ci ratio: 8.480242e-03	ci left: 8.731290e-01	ci right 8.805979e-01	k: 26307	n:30000
KS ci ratio: 1.915552e-01	ci left: 1.244696e-02	ci right 1.511510e-02	k: 412	n:30000
NKG7   30000 perm   5 sec   (6364 perm/sec)   p_kst 1.373333e-02   p_cons 8.769000e-01   p_joint 1.379000e-01

Joint ci ratio: 5.105989e-02	ci left: 1.251362e-01	ci right 1.317179e-01	k: 5136	n:40000
Cons ci ratio: 7.313341e-03	ci left: 8.745504e-01	ci right 8.809946e-01	k: 35112	n:40000
KS ci ratio: 1.658414e-01	ci left: 1.263170e-02	ci right 1.493968e-02	k: 550	n:40000
NKG7   40000 perm   7 sec   (6108 perm/sec)   p_kst 1.375000e-02   p_cons 8.778000e-01   p_joint 1.284000e-01

Joint ci ratio: 4.819253e-02	ci left: 1.140367e-01	ci right 1.196879e-01	k: 5842	n:50000
Cons ci ratio: 6.486192e-03	ci left: 8.767155e-01	ci right 8.824404e-01	k: 43980	n:50000
KS ci ratio: 1.487446e-01	ci left: 1.268015e-02	ci right 1.473688e-02	k: 684	n:50000
NKG7   50000 perm   8 sec   (5962 perm/sec)   p_kst 1.368000e-02   p_cons 8.796000e-01   p_joint 1.168400e-01

Joint ci ratio: 6.378670e-02	ci left: 5.732467e-02	ci right 6.111810e-02	k: 3552	n:60000
Cons ci ratio: 5.922412e-03	ci left: 8.769189e-01	ci right 8.821443e-01	k: 52773	n:60000
KS ci ratio: 1.384562e-01	ci left: 1.226986e-02	ci right 1.411101e-02	k: 790	n:60000
NKG7   60000 perm   10 sec   (5816 perm/sec)   p_kst 1.316667e-02   p_cons 8.795500e-01   p_joint 5.920000e-02

Joint ci ratio: 4.514308e-02	ci left: 9.504340e-02	ci right 9.944719e-02	k: 6806	n:70000
Cons ci ratio: 5.477330e-03	ci left: 8.773393e-01	ci right 8.821721e-01	k: 61584	n:70000
KS ci ratio: 1.270626e-01	ci left: 1.256130e-02	ci right 1.427938e-02	k: 938	n:70000
NKG7   70000 perm   12 sec   (5675 perm/sec)   p_kst 1.340000e-02   p_cons 8.797714e-01   p_joint 9.722857e-02

Joint ci ratio: 3.766933e-02	ci left: 1.169747e-01	ci right 1.214780e-01	k: 9537	n:80000
Cons ci ratio: 5.201566e-03	ci left: 8.742380e-01	ci right 8.788097e-01	k: 70123	n:80000
KS ci ratio: 1.182514e-01	ci left: 1.274815e-02	ci right 1.436241e-02	k: 1083	n:80000
NKG7   80000 perm   14 sec   (5557 perm/sec)   p_kst 1.353750e-02   p_cons 8.765375e-01   p_joint 1.192125e-01

Joint ci ratio: 4.209979e-02	ci left: 8.601385e-02	ci right 8.972387e-02	k: 7907	n:90000
Cons ci ratio: 4.906430e-03	ci left: 8.742656e-01	ci right 8.785767e-01	k: 78879	n:90000
KS ci ratio: 1.120723e-01	ci left: 1.265897e-02	ci right 1.417263e-02	k: 1206	n:90000
NKG7   90000 perm   17 sec   (5421 perm/sec)   p_kst 1.340000e-02   p_cons 8.764333e-01   p_joint 8.785556e-02

Joint ci ratio: 3.985904e-02	ci left: 8.642949e-02	ci right 8.995444e-02	k: 8818	n:100000
Cons ci ratio: 4.667379e-03	ci left: 8.737802e-01	ci right 8.778779e-01	k: 87584	n:100000
KS ci ratio: 1.062053e-01	ci left: 1.272571e-02	ci right 1.416271e-02	k: 1343	n:100000
NKG7   100000 perm   19 sec   (5317 perm/sec)   p_kst 1.343000e-02   p_cons 8.758400e-01   p_joint 8.818000e-02

Joint ci ratio: 3.805771e-02	ci left: 8.628713e-02	ci right 8.964372e-02	k: 9675	n:110000
Cons ci ratio: 4.449493e-03	ci left: 8.739097e-01	ci right 8.778159e-01	k: 96346	n:110000
KS ci ratio: 1.016257e-01	ci left: 1.266679e-02	ci right 1.403178e-02	k: 1467	n:110000
NKG7   110000 perm   21 sec   (5218 perm/sec)   p_kst 1.333636e-02   p_cons 8.758727e-01   p_joint 8.795455e-02

Joint ci ratio: 3.008629e-02	ci left: 1.220657e-01	ci right 1.258025e-01	k: 14871	n:120000
Cons ci ratio: 4.264585e-03	ci left: 8.737614e-01	ci right 8.775038e-01	k: 105077	n:120000
KS ci ratio: 9.780981e-02	ci left: 1.256188e-02	ci right 1.386181e-02	k: 1584	n:120000
NKG7   120000 perm   23 sec   (5119 perm/sec)   p_kst 1.320000e-02   p_cons 8.756417e-01   p_joint 1.239250e-01

Outputting figure to mutsig2_images.part000000000115/NKG7.2_514_120000_0.0132_0.87564_0.12392.png
                gene_name: NKG7
               theta_stop: 0.098 
                    nperm: 120000 
                     p_ks: 0.013 
        ci_ks_bounds_left: 0.013 
       ci_ks_bounds_right: 0.014 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 82 percent done.
NKX2-5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.657053e-01	ci left: 1.846678e-02	ci right 2.421679e-02	k: 212	n:10000
Cons ci ratio: 6.780486e-02	ci left: 2.419322e-01	ci right 2.590133e-01	k: 2504	n:10000
KS ci ratio: 3.716778e-01	ci left: 8.958341e-03	ci right 1.313383e-02	k: 109	n:10000
NKX2-5   10000 perm   1 sec   (6833 perm/sec)   p_kst 1.090000e-02   p_cons 2.504000e-01   p_joint 2.120000e-02

Joint ci ratio: 1.656068e-01	ci left: 2.498955e-02	ci right 2.954929e-02	k: 544	n:20000
Cons ci ratio: 4.611509e-02	ci left: 2.592404e-01	ci right 2.715279e-01	k: 5307	n:20000
KS ci ratio: 2.646529e-01	ci left: 9.413987e-03	ci right 1.233084e-02	k: 216	n:20000
NKX2-5   20000 perm   3 sec   (6176 perm/sec)   p_kst 1.080000e-02   p_cons 2.653500e-01   p_joint 2.720000e-02

Joint ci ratio: 1.466356e-01	ci left: 2.155829e-02	ci right 2.500155e-02	k: 697	n:30000
Cons ci ratio: 3.752777e-02	ci left: 2.616687e-01	ci right 2.717098e-01	k: 8000	n:30000
KS ci ratio: 2.197008e-01	ci left: 9.345984e-03	ci right 1.168360e-02	k: 314	n:30000
NKX2-5   30000 perm   5 sec   (5891 perm/sec)   p_kst 1.046667e-02   p_cons 2.666667e-01   p_joint 2.323333e-02

Joint ci ratio: 1.556949e-01	ci left: 1.438431e-02	ci right 1.683674e-02	k: 623	n:40000
Cons ci ratio: 3.247099e-02	ci left: 2.626940e-01	ci right 2.713898e-01	k: 10681	n:40000
KS ci ratio: 1.918899e-01	ci left: 9.333738e-03	ci right 1.133831e-02	k: 412	n:40000
NKX2-5   40000 perm   7 sec   (5717 perm/sec)   p_kst 1.030000e-02   p_cons 2.670250e-01   p_joint 1.557500e-02

Joint ci ratio: 1.223402e-01	ci left: 1.888779e-02	ci right 2.136837e-02	k: 1005	n:50000
Cons ci ratio: 2.898741e-02	ci left: 2.639023e-01	ci right 2.716847e-01	k: 13389	n:50000
KS ci ratio: 1.721804e-01	ci left: 9.376099e-03	ci right 1.116145e-02	k: 512	n:50000
NKX2-5   50000 perm   9 sec   (5565 perm/sec)   p_kst 1.024000e-02   p_cons 2.677800e-01   p_joint 2.010000e-02

Joint ci ratio: 1.124054e-01	ci left: 1.874885e-02	ci right 2.099793e-02	k: 1191	n:60000
Cons ci ratio: 2.652829e-02	ci left: 2.632640e-01	ci right 2.703585e-01	k: 16008	n:60000
KS ci ratio: 1.592299e-01	ci left: 9.203287e-03	ci right 1.081131e-02	k: 599	n:60000
NKX2-5   60000 perm   11 sec   (5445 perm/sec)   p_kst 9.983333e-03   p_cons 2.668000e-01   p_joint 1.985000e-02

Joint ci ratio: 1.046704e-01	ci left: 1.861374e-02	ci right 2.068349e-02	k: 1374	n:70000
Cons ci ratio: 2.452208e-02	ci left: 2.641380e-01	ci right 2.707099e-01	k: 18719	n:70000
KS ci ratio: 1.480607e-01	ci left: 9.179802e-03	ci right 1.066125e-02	k: 693	n:70000
NKX2-5   70000 perm   13 sec   (5312 perm/sec)   p_kst 9.900000e-03   p_cons 2.674143e-01   p_joint 1.962857e-02

Joint ci ratio: 9.808323e-02	ci left: 1.861402e-02	ci right 2.054604e-02	k: 1565	n:80000
Cons ci ratio: 2.286993e-02	ci left: 2.655183e-01	ci right 2.716734e-01	k: 21487	n:80000
KS ci ratio: 1.392218e-01	ci left: 9.128955e-03	ci right 1.050694e-02	k: 784	n:80000
NKX2-5   80000 perm   15 sec   (5200 perm/sec)   p_kst 9.800000e-03   p_cons 2.685875e-01   p_joint 1.956250e-02

Joint ci ratio: 9.236026e-02	ci left: 1.871517e-02	ci right 2.053820e-02	k: 1765	n:90000
Cons ci ratio: 2.154614e-02	ci left: 2.659830e-01	ci right 2.717874e-01	k: 24199	n:90000
KS ci ratio: 1.303038e-01	ci left: 9.306465e-03	ci right 1.061430e-02	k: 895	n:90000
NKX2-5   90000 perm   18 sec   (5086 perm/sec)   p_kst 9.944444e-03   p_cons 2.688778e-01   p_joint 1.961111e-02

Joint ci ratio: 8.715119e-02	ci left: 1.896507e-02	ci right 2.070294e-02	k: 1982	n:100000
Cons ci ratio: 2.047477e-02	ci left: 2.654759e-01	ci right 2.709776e-01	k: 26822	n:100000
KS ci ratio: 1.222936e-01	ci left: 9.547687e-03	ci right 1.080097e-02	k: 1016	n:100000
NKX2-5   100000 perm   20 sec   (4995 perm/sec)   p_kst 1.016000e-02   p_cons 2.682200e-01   p_joint 1.982000e-02

Joint ci ratio: 8.265771e-02	ci left: 1.920752e-02	ci right 2.087247e-02	k: 2203	n:110000
Cons ci ratio: 1.944550e-02	ci left: 2.671423e-01	ci right 2.723971e-01	k: 29674	n:110000
KS ci ratio: 1.156506e-01	ci left: 9.738230e-03	ci right 1.094234e-02	k: 1136	n:110000
NKX2-5   110000 perm   22 sec   (4910 perm/sec)   p_kst 1.032727e-02   p_cons 2.697636e-01   p_joint 2.002727e-02

Joint ci ratio: 7.894404e-02	ci left: 1.933791e-02	ci right 2.093539e-02	k: 2415	n:120000
Cons ci ratio: 1.860731e-02	ci left: 2.674729e-01	ci right 2.725049e-01	k: 32398	n:120000
KS ci ratio: 1.100727e-01	ci left: 9.882334e-03	ci right 1.104151e-02	k: 1254	n:120000
NKX2-5   120000 perm   25 sec   (4816 perm/sec)   p_kst 1.045000e-02   p_cons 2.699833e-01   p_joint 2.012500e-02

Joint ci ratio: 7.545565e-02	ci left: 1.957046e-02	ci right 2.111257e-02	k: 2643	n:130000
Cons ci ratio: 1.852849e-02	ci left: 2.537443e-01	ci right 2.584974e-01	k: 33295	n:130000
KS ci ratio: 1.054251e-01	ci left: 9.967988e-03	ci right 1.108478e-02	k: 1367	n:130000
NKX2-5   130000 perm   27 sec   (4733 perm/sec)   p_kst 1.051538e-02   p_cons 2.561154e-01   p_joint 2.033077e-02

Joint ci ratio: 7.272896e-02	ci left: 1.958870e-02	ci right 2.107411e-02	k: 2845	n:140000
Cons ci ratio: 1.786128e-02	ci left: 2.536869e-01	ci right 2.582660e-01	k: 35836	n:140000
KS ci ratio: 1.017730e-01	ci left: 9.951764e-03	ci right 1.102580e-02	k: 1467	n:140000
NKX2-5   140000 perm   30 sec   (4630 perm/sec)   p_kst 1.047857e-02   p_cons 2.559714e-01   p_joint 2.032143e-02

Joint ci ratio: 7.036050e-02	ci left: 1.955952e-02	ci right 2.099244e-02	k: 3040	n:150000
Cons ci ratio: 1.724953e-02	ci left: 2.538992e-01	ci right 2.583236e-01	k: 38416	n:150000
KS ci ratio: 9.885885e-02	ci left: 9.860237e-03	ci right 1.089215e-02	k: 1555	n:150000
NKX2-5   150000 perm   33 sec   (4516 perm/sec)   p_kst 1.036667e-02   p_cons 2.561067e-01   p_joint 2.026667e-02

Outputting figure to mutsig2_images.part000000000115/NKX2-5.2_1118_150000_0.010367_0.25611_0.020267.png
                gene_name: NKX2-5
               theta_stop: 0.099 
                    nperm: 150000 
                     p_ks: 0.010 
        ci_ks_bounds_left: 0.0099 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.020 
     ci_joint_bounds_left: 0.020 
    ci_joint_bounds_right: 0.021 

Current progress: 84 percent done.
NKX6-1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.144643e-01	ci left: 1.289402e-02	ci right 1.779424e-02	k: 152	n:10000
KS ci ratio: 4.307694e-02	ci left: 4.431087e-01	ci right 4.627188e-01	k: 4529	n:10000
NKX6-1   10000 perm   2 sec   (6638 perm/sec)   p_kst 4.529000e-01   p_cons 1.520000e-02   p_joint 1

Joint ci ratio: 9.390070e-02	ci left: 7.637423e-02	ci right 8.394836e-02	k: 1602	n:20000
Cons ci ratio: 2.273197e-01	ci left: 1.298353e-02	ci right 1.635973e-02	k: 292	n:20000
KS ci ratio: 3.029410e-02	ci left: 4.487297e-01	ci right 4.625832e-01	k: 9113	n:20000
NKX6-1   20000 perm   3 sec   (5940 perm/sec)   p_kst 4.556500e-01   p_cons 1.460000e-02   p_joint 8.010000e-02

Joint ci ratio: 1.016078e-01	ci left: 4.486009e-02	ci right 4.969474e-02	k: 1417	n:30000
Cons ci ratio: 1.842295e-01	ci left: 1.349588e-02	ci right 1.626590e-02	k: 445	n:30000
KS ci ratio: 2.469006e-02	ci left: 4.509179e-01	ci right 4.622239e-01	k: 13697	n:30000
NKX6-1   30000 perm   5 sec   (5606 perm/sec)   p_kst 4.565667e-01   p_cons 1.483333e-02   p_joint 4.723333e-02

Joint ci ratio: 8.686006e-02	ci left: 4.634169e-02	ci right 5.057417e-02	k: 1937	n:40000
Cons ci ratio: 1.580264e-01	ci left: 1.395173e-02	ci right 1.636941e-02	k: 605	n:40000
KS ci ratio: 2.133483e-02	ci left: 4.527834e-01	ci right 4.625727e-01	k: 18307	n:40000
NKX6-1   40000 perm   7 sec   (5515 perm/sec)   p_kst 4.576750e-01   p_cons 1.512500e-02   p_joint 4.842500e-02

Joint ci ratio: 7.766491e-02	ci left: 4.659405e-02	ci right 5.037859e-02	k: 2423	n:50000
Cons ci ratio: 1.418673e-01	ci left: 1.397209e-02	ci right 1.612475e-02	k: 751	n:50000
KS ci ratio: 1.911705e-02	ci left: 4.524064e-01	ci right 4.611586e-01	k: 22839	n:50000
NKX6-1   50000 perm   9 sec   (5422 perm/sec)   p_kst 4.567800e-01   p_cons 1.502000e-02   p_joint 4.846000e-02

Joint ci ratio: 7.108841e-02	ci left: 4.651610e-02	ci right 4.996110e-02	k: 2893	n:60000
Cons ci ratio: 1.300492e-01	ci left: 1.394578e-02	ci right 1.590155e-02	k: 894	n:60000
KS ci ratio: 1.743322e-02	ci left: 4.533077e-01	ci right 4.612965e-01	k: 27438	n:60000
NKX6-1   60000 perm   11 sec   (5341 perm/sec)   p_kst 4.573000e-01   p_cons 1.490000e-02   p_joint 4.821667e-02

Joint ci ratio: 6.605532e-02	ci left: 4.631556e-02	ci right 4.949348e-02	k: 3352	n:70000
Cons ci ratio: 1.207058e-01	ci left: 1.394621e-02	ci right 1.575148e-02	k: 1038	n:70000
KS ci ratio: 1.611178e-02	ci left: 4.544751e-01	ci right 4.618712e-01	k: 32072	n:70000
NKX6-1   70000 perm   13 sec   (5271 perm/sec)   p_kst 4.581714e-01   p_cons 1.482857e-02   p_joint 4.788571e-02

Joint ci ratio: 6.158685e-02	ci left: 4.671361e-02	ci right 4.969426e-02	k: 3855	n:80000
Cons ci ratio: 1.126900e-01	ci left: 1.405969e-02	ci right 1.575075e-02	k: 1191	n:80000
KS ci ratio: 1.501888e-02	ci left: 4.564417e-01	ci right 4.633613e-01	k: 36792	n:80000
NKX6-1   80000 perm   15 sec   (5178 perm/sec)   p_kst 4.599000e-01   p_cons 1.488750e-02   p_joint 4.818750e-02

Joint ci ratio: 5.791754e-02	ci left: 4.702884e-02	ci right 4.984480e-02	k: 4358	n:90000
Cons ci ratio: 1.056866e-01	ci left: 1.425926e-02	ci right 1.586111e-02	k: 1354	n:90000
KS ci ratio: 1.416598e-02	ci left: 4.564287e-01	ci right 4.629517e-01	k: 41372	n:90000
NKX6-1   90000 perm   18 sec   (5078 perm/sec)   p_kst 4.596889e-01   p_cons 1.504444e-02   p_joint 4.842222e-02

Joint ci ratio: 5.497127e-02	ci left: 4.705823e-02	ci right 4.972804e-02	k: 4838	n:100000
Cons ci ratio: 1.000124e-01	ci left: 1.437275e-02	ci right 1.589556e-02	k: 1512	n:100000
KS ci ratio: 1.347371e-02	ci left: 4.553180e-01	ci right 4.615044e-01	k: 45841	n:100000
NKX6-1   100000 perm   20 sec   (4995 perm/sec)   p_kst 4.584100e-01   p_cons 1.512000e-02   p_joint 4.838000e-02

Joint ci ratio: 5.254235e-02	ci left: 4.689674e-02	ci right 4.943624e-02	k: 5297	n:110000
Cons ci ratio: 9.574734e-02	ci left: 1.428995e-02	ci right 1.573579e-02	k: 1650	n:110000
KS ci ratio: 1.285590e-02	ci left: 4.551068e-01	ci right 4.610045e-01	k: 50386	n:110000
NKX6-1   110000 perm   22 sec   (4907 perm/sec)   p_kst 4.580545e-01   p_cons 1.500000e-02   p_joint 4.815455e-02

Outputting figure to mutsig2_images.part000000000115/NKX6-1.2_1116_110000_0.45805_0.015_0.048155.png
                gene_name: NKX6-1
               theta_stop: 0.096 
                    nperm: 110000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.015 
      ci_cons_bounds_left: 0.014 
     ci_cons_bounds_right: 0.016 
                  p_joint: 0.048 
     ci_joint_bounds_left: 0.047 
    ci_joint_bounds_right: 0.049 

Current progress: 86 percent done.
NLK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.867131e-02	ci left: 8.073497e-01	ci right 8.226663e-01	k: 8151	n:10000
KS ci ratio: 2.034513e-02	ci left: 7.796531e-01	ci right 7.957789e-01	k: 7878	n:10000
NLK   10000 perm   2 sec   (6612 perm/sec)   p_kst 7.878000e-01   p_cons 8.151000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000115/NLK.2_1628_10000_0.7878_0.8151_1.png
                gene_name: NLK
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
NLN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.042617e-02	ci left: 9.289561e-01	ci right 9.387893e-01	k: 9340	n:10000
Cons ci ratio: 6.724503e-03	ci left: 9.680482e-01	ci right 9.746734e-01	k: 9715	n:10000
KS ci ratio: 4.894348e-02	ci left: 3.811202e-01	ci right 4.003435e-01	k: 3907	n:10000
NLN   10000 perm   1 sec   (6797 perm/sec)   p_kst 3.907000e-01   p_cons 9.715000e-01   p_joint 9.340000e-01

Outputting figure to mutsig2_images.part000000000115/NLN.2_2167_10000_0.3907_0.9715_0.934.png
                gene_name: NLN
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 90 percent done.
NMI
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.380295e-02	ci left: 7.217883e-01	ci right 7.392772e-01	k: 7306	n:10000
Cons ci ratio: 1.999794e-02	ci left: 7.854313e-01	ci right 8.013975e-01	k: 7935	n:10000
KS ci ratio: 2.830261e-02	ci left: 6.479030e-01	ci right 6.666053e-01	k: 6573	n:10000
NMI   10000 perm   1 sec   (7056 perm/sec)   p_kst 6.573000e-01   p_cons 7.935000e-01   p_joint 7.306000e-01

Outputting figure to mutsig2_images.part000000000115/NMI.2_952_10000_0.6573_0.7935_0.7306.png
                gene_name: NMI
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 92 percent done.
NMNAT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.627951e-02	ci left: 6.807302e-01	ci right 6.989591e-01	k: 6899	n:10000
Cons ci ratio: 4.420689e-02	ci left: 4.303394e-01	ci right 4.498955e-01	k: 4401	n:10000
KS ci ratio: 5.186117e-02	ci left: 3.540633e-01	ci right 3.730162e-01	k: 3635	n:10000
NMNAT2   10000 perm   1 sec   (7135 perm/sec)   p_kst 3.635000e-01   p_cons 4.401000e-01   p_joint 6.899000e-01

Outputting figure to mutsig2_images.part000000000115/NMNAT2.2_1042_10000_0.3635_0.4401_0.6899.png
                gene_name: NMNAT2
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 94 percent done.
NMU
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.383534e-02	ci left: 5.632351e-01	ci right 5.827224e-01	k: 5730	n:10000
KS ci ratio: 1.947207e-02	ci left: 7.941537e-01	ci right 8.098700e-01	k: 8021	n:10000
NMU   10000 perm   1 sec   (7313 perm/sec)   p_kst 8.021000e-01   p_cons 5.730000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000115/NMU.2_561_10000_0.8021_0.573_1.png
                gene_name: NMU
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
NOB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.811177e-02	ci left: 8.164937e-01	ci right 8.315171e-01	k: 8241	n:10000
Cons ci ratio: 6.881274e-02	ci left: 2.364969e-01	ci right 2.534520e-01	k: 2449	n:10000
KS ci ratio: 3.143295e-02	ci left: 5.989536e-01	ci right 6.181831e-01	k: 6086	n:10000
NOB1   10000 perm   1 sec   (6685 perm/sec)   p_kst 6.086000e-01   p_cons 2.449000e-01   p_joint 8.241000e-01

Outputting figure to mutsig2_images.part000000000115/NOB1.2_1275_10000_0.6086_0.2449_0.8241.png
                gene_name: NOB1
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 98 percent done.
NOL11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.385488e-02	ci left: 8.826795e-01	ci right 8.950929e-01	k: 8890	n:10000
Cons ci ratio: 6.604575e-02	ci left: 2.518194e-01	ci right 2.691203e-01	k: 2604	n:10000
KS ci ratio: 1.641767e-02	ci left: 8.436649e-01	ci right 8.577302e-01	k: 8508	n:10000
NOL11   10000 perm   2 sec   (6284 perm/sec)   p_kst 8.508000e-01   p_cons 2.604000e-01   p_joint 8.890000e-01

Outputting figure to mutsig2_images.part000000000115/NOL11.2_2232_10000_0.8508_0.2604_0.889.png
                gene_name: NOL11
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.90 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000115
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 115 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1708>
Subject: Job 8004314: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1708>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000116> was used as the working directory.
Started at Sun Nov 11 15:09:35 2012
Results reported at Sun Nov 11 16:26:46 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000116.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000116.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 116  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000116.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   4751.73 sec.
    Max Memory :      6084 MB
    Max Swap   :      8564 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
116
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 116
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 116: processing genes 10405 - 10495
Calculating significance of each gene.
Using projection method.
10405	NOL3	1
10406	NOL4	1
10407	NOL6	9.951588e-01
10408	NOL7	1
10409	NOL8	9.185934e-01
10410	NOL9	3.931792e-01
10411	NOLC1	1
10412	NOM1	6.494710e-01
10413	NOMO1	9.915659e-01
10414	NOMO2	6.758736e-01
10415	NOMO3	1
10416	NONO	7.788523e-01
10417	NOP10	5.169936e-02
10418	NOP14	7.749933e-01
10419	NOP16	1
10420	NOP2	6.982260e-01
10421	NOP56	3.724677e-01
10422	NOP58	8.532539e-01
10423	NOS1	9.365649e-01
10424	NOS1AP	4.830297e-01
10425	NOS2	8.944566e-01
10426	NOS3	9.738132e-01
10427	NOSIP	1
10428	NOSTRIN	8.508249e-01
10429	NOTCH1	4.104343e-01
10430	NOTCH2	8.916902e-01
10431	NOTCH2NL	2.681471e-02
10432	NOTCH3	9.244867e-01
10433	NOTCH4	9.996271e-01
10434	NOTUM	2.228579e-03
10435	NOV	5.573140e-01
10436	NOVA1	1.584640e-02
10437	NOVA2	4.890194e-01
10438	NOX1	5.374831e-01
10439	NOX3	1.950878e-01
10440	NOX4	1.657892e-01
10441	NOX5	4.493397e-01
10442	NOXA1	1
10443	NOXO1	1
10444	NPAS1	8.048834e-01
10445	NPAS2	1
10446	NPAS3	4.432040e-01
10447	NPAS4	7.976554e-01
10448	NPAT	9.150074e-01
10449	NPB	1
10450	NPBWR1	5.183925e-02
10451	NPBWR2	1
10452	NPC1	9.409748e-01
10453	NPC1L1	9.967958e-01
10454	NPC2	1
10455	NPDC1	1
10456	NPEPL1	1.915369e-01
10457	NPEPPS	3.931432e-01
10458	NPFF	1
10459	NPFFR1	1
10460	NPFFR2	5.869549e-03
10461	NPHP1	8.746421e-01
10462	NPHP3	9.836592e-01
10463	NPHP4	5.632325e-01
10464	NPHS1	1
10465	NPHS2	2.139368e-01
10466	NPIP	1
10467	NPL	2.027242e-01
10468	NPLOC4	6.929509e-01
10469	NPM1	1
10470	NPM2	1
10471	NPM3	1
10472	NPNT	7.553035e-01
10473	NPPA	1
10474	NPPB	1.970653e-01
10475	NPPC	1
10476	NPR1	1
10477	NPR2	6.521248e-01
10478	NPR3	3.437310e-01
10479	NPRL2	1
10480	NPRL3	1
10481	NPS	9.840677e-03
10482	NPSR1	8.322202e-01
10483	NPTN	1
10484	NPTX1	7.723630e-01
10485	NPTX2	1
10486	NPTXR	4.994940e-01
10487	NPVF	1.854356e-02
10488	NPW	1
10489	NPY	1
10490	NPY1R	1
10491	NPY2R	8.335927e-02
10492	NPY5R	5.833223e-01
10493	NQO1	1
10494	NQO2	1
10495	NR0B1	4.243097e-02
Done

Running MutSig 2:
Scatter job 116: processing genes 10405 - 10495
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
NOTCH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.787022e-01	ci left: 8.595766e-03	ci right 1.269681e-02	k: 105	n:10000
Cons ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
KS ci ratio: 2.583828e-02	ci left: 6.879873e-01	ci right 7.060978e-01	k: 6971	n:10000
NOTCH1   10000 perm   3 sec   (3328 perm/sec)   p_kst 6.971000e-01   p_cons 1.000000e-04   p_joint 1.050000e-02

Joint ci ratio: 3.628969e-01	ci left: 4.749480e-03	ci right 6.898025e-03	k: 115	n:20000
Cons ci ratio: 1.752814e+00	ci left: 5.449587e-05	ci right 5.119995e-04	k: 4	n:20000
KS ci ratio: 1.867858e-02	ci left: 6.812253e-01	ci right 6.941201e-01	k: 13754	n:20000
NOTCH1   20000 perm   8 sec   (2420 perm/sec)   p_kst 6.877000e-01   p_cons 2.000000e-04   p_joint 5.750000e-03

Joint ci ratio: 3.953260e-01	ci left: 2.622774e-03	ci right 3.942989e-03	k: 97	n:30000
Cons ci ratio: 1.086959e+00	ci left: 2.067024e-04	ci right 6.986151e-04	k: 12	n:30000
KS ci ratio: 1.472428e-02	ci left: 6.973913e-01	ci right 7.077695e-01	k: 21078	n:30000
NOTCH1   30000 perm   12 sec   (2569 perm/sec)   p_kst 7.026000e-01   p_cons 4.000000e-04   p_joint 3.233333e-03

Joint ci ratio: 5.380899e-01	ci left: 9.710499e-04	ci right 1.704432e-03	k: 52	n:40000
Cons ci ratio: 9.797917e-01	ci left: 2.098994e-04	ci right 6.184302e-04	k: 15	n:40000
KS ci ratio: 1.331492e-02	ci left: 6.796441e-01	ci right 6.887792e-01	k: 27369	n:40000
NOTCH1   40000 perm   15 sec   (2643 perm/sec)   p_kst 6.842250e-01   p_cons 3.750000e-04   p_joint 1.300000e-03

Joint ci ratio: 2.291225e-01	ci left: 5.153222e-03	ci right 6.505122e-03	k: 290	n:50000
Cons ci ratio: 8.552259e-01	ci left: 2.443470e-04	ci right 6.177003e-04	k: 20	n:50000
KS ci ratio: 1.189177e-02	ci left: 6.807673e-01	ci right 6.889312e-01	k: 34243	n:50000
NOTCH1   50000 perm   19 sec   (2679 perm/sec)   p_kst 6.848600e-01   p_cons 4.000000e-04   p_joint 5.800000e-03

Joint ci ratio: 2.250004e-01	ci left: 4.467073e-03	ci right 5.614940e-03	k: 301	n:60000
Cons ci ratio: 8.552573e-01	ci left: 2.036202e-04	ci right 5.147596e-04	k: 20	n:60000
KS ci ratio: 1.086179e-02	ci left: 6.808814e-01	ci right 6.883341e-01	k: 41077	n:60000
NOTCH1   60000 perm   22 sec   (2695 perm/sec)   p_kst 6.846167e-01   p_cons 3.333333e-04   p_joint 5.016667e-03

Joint ci ratio: 2.254571e-01	ci left: 3.815291e-03	ci right 4.797926e-03	k: 300	n:70000
Cons ci ratio: 8.000238e-01	ci left: 2.082971e-04	ci right 4.929779e-04	k: 23	n:70000
KS ci ratio: 1.002953e-02	ci left: 6.823035e-01	ci right 6.891954e-01	k: 48003	n:70000
NOTCH1   70000 perm   26 sec   (2700 perm/sec)   p_kst 6.857571e-01   p_cons 3.285714e-04   p_joint 4.285714e-03

Joint ci ratio: 2.140433e-01	ci left: 3.728168e-03	ci right 4.633370e-03	k: 333	n:80000
Cons ci ratio: 7.542723e-01	ci left: 2.123114e-04	ci right 4.761643e-04	k: 26	n:80000
KS ci ratio: 9.378124e-03	ci left: 6.826957e-01	ci right 6.891408e-01	k: 54874	n:80000
NOTCH1   80000 perm   30 sec   (2695 perm/sec)   p_kst 6.859250e-01   p_cons 3.250000e-04   p_joint 4.162500e-03

Joint ci ratio: 2.150649e-01	ci left: 3.282302e-03	ci right 4.083545e-03	k: 330	n:90000
Cons ci ratio: 7.039276e-01	ci left: 2.249095e-04	ci right 4.758201e-04	k: 30	n:90000
KS ci ratio: 8.860547e-03	ci left: 6.819649e-01	ci right 6.880454e-01	k: 61651	n:90000
NOTCH1   90000 perm   34 sec   (2686 perm/sec)   p_kst 6.850111e-01   p_cons 3.333333e-04   p_joint 3.666667e-03

Joint ci ratio: 2.088656e-01	ci left: 3.143432e-03	ci right 3.885825e-03	k: 350	n:100000
Cons ci ratio: 6.443216e-01	ci left: 2.521519e-04	ci right 4.983573e-04	k: 36	n:100000
KS ci ratio: 8.396143e-03	ci left: 6.826219e-01	ci right 6.883874e-01	k: 68551	n:100000
NOTCH1   100000 perm   37 sec   (2674 perm/sec)   p_kst 6.855100e-01   p_cons 3.600000e-04   p_joint 3.500000e-03

Joint ci ratio: 1.991715e-01	ci left: 3.159602e-03	ci right 3.866974e-03	k: 385	n:110000
Cons ci ratio: 5.908413e-01	ci left: 2.829168e-04	ci right 5.265163e-04	k: 43	n:110000
KS ci ratio: 8.027886e-03	ci left: 6.815439e-01	ci right 6.870464e-01	k: 75273	n:110000
NOTCH1   110000 perm   41 sec   (2658 perm/sec)   p_kst 6.843000e-01   p_cons 3.909091e-04   p_joint 3.500000e-03

Joint ci ratio: 2.045881e-01	ci left: 2.737996e-03	ci right 3.369732e-03	k: 365	n:120000
Cons ci ratio: 5.542539e-01	ci left: 3.021020e-04	ci right 5.398028e-04	k: 49	n:120000
KS ci ratio: 7.690863e-03	ci left: 6.813944e-01	ci right 6.866634e-01	k: 82084	n:120000
NOTCH1   120000 perm   45 sec   (2638 perm/sec)   p_kst 6.840333e-01   p_cons 4.083333e-04   p_joint 3.041667e-03

Joint ci ratio: 2.195528e-01	ci left: 2.177664e-03	ci right 2.721833e-03	k: 317	n:130000
Cons ci ratio: 5.333316e-01	ci left: 3.054040e-04	ci right 5.332381e-04	k: 53	n:130000
KS ci ratio: 7.400237e-03	ci left: 6.808481e-01	ci right 6.859129e-01	k: 88840	n:130000
NOTCH1   130000 perm   50 sec   (2619 perm/sec)   p_kst 6.833846e-01   p_cons 4.076923e-04   p_joint 2.438462e-03

Joint ci ratio: 2.060489e-01	ci left: 2.312922e-03	ci right 2.850867e-03	k: 360	n:140000
Cons ci ratio: 5.284670e-01	ci left: 2.897733e-04	ci right 5.032439e-04	k: 54	n:140000
KS ci ratio: 7.110911e-03	ci left: 6.821657e-01	ci right 6.870409e-01	k: 95845	n:140000
NOTCH1   140000 perm   54 sec   (2600 perm/sec)   p_kst 6.846071e-01   p_cons 3.857143e-04   p_joint 2.571429e-03

Joint ci ratio: 1.308600e-01	ci left: 5.557373e-03	ci right 6.341908e-03	k: 891	n:150000
Cons ci ratio: 4.466093e-01	ci left: 3.992158e-04	ci right 6.341285e-04	k: 76	n:150000
KS ci ratio: 7.021809e-03	ci left: 6.727032e-01	ci right 6.774500e-01	k: 101262	n:150000
NOTCH1   150000 perm   58 sec   (2580 perm/sec)   p_kst 6.750800e-01   p_cons 5.066667e-04   p_joint 5.940000e-03

Joint ci ratio: 1.456587e-01	ci left: 4.177925e-03	ci right 4.840227e-03	k: 720	n:160000
Cons ci ratio: 4.381584e-01	ci left: 3.909254e-04	ci right 6.153224e-04	k: 79	n:160000
KS ci ratio: 6.794849e-03	ci left: 6.730368e-01	ci right 6.776318e-01	k: 108054	n:160000
NOTCH1   160000 perm   63 sec   (2560 perm/sec)   p_kst 6.753375e-01   p_cons 4.937500e-04   p_joint 4.500000e-03

Joint ci ratio: 1.431094e-01	ci left: 4.079566e-03	ci right 4.713989e-03	k: 746	n:170000
Cons ci ratio: 4.301696e-01	ci left: 3.836474e-04	ci right 5.986923e-04	k: 82	n:170000
KS ci ratio: 6.592714e-03	ci left: 6.730564e-01	ci right 6.775141e-01	k: 114799	n:170000
NOTCH1   170000 perm   67 sec   (2539 perm/sec)   p_kst 6.752882e-01   p_cons 4.823529e-04   p_joint 4.388235e-03

Joint ci ratio: 1.414260e-01	ci left: 3.949345e-03	ci right 4.555682e-03	k: 764	n:180000
Cons ci ratio: 4.177701e-01	ci left: 3.871477e-04	ci right 5.961562e-04	k: 87	n:180000
KS ci ratio: 6.402738e-03	ci left: 6.734094e-01	ci right 6.777405e-01	k: 121604	n:180000
NOTCH1   180000 perm   71 sec   (2519 perm/sec)   p_kst 6.755778e-01   p_cons 4.833333e-04   p_joint 4.244444e-03

Joint ci ratio: 1.398001e-01	ci left: 3.832872e-03	ci right 4.413997e-03	k: 782	n:190000
Cons ci ratio: 4.042160e-01	ci left: 3.950860e-04	ci right 5.996053e-04	k: 93	n:190000
KS ci ratio: 6.233000e-03	ci left: 6.733948e-01	ci right 6.776104e-01	k: 128346	n:190000
NOTCH1   190000 perm   76 sec   (2499 perm/sec)   p_kst 6.755053e-01   p_cons 4.894737e-04   p_joint 4.115789e-03

Joint ci ratio: 1.284507e-01	ci left: 4.337179e-03	ci right 4.937318e-03	k: 926	n:200000
Cons ci ratio: 3.938763e-01	ci left: 3.978230e-04	ci right 5.971211e-04	k: 98	n:200000
KS ci ratio: 6.071371e-03	ci left: 6.737235e-01	ci right 6.778314e-01	k: 135156	n:200000
NOTCH1   200000 perm   81 sec   (2478 perm/sec)   p_kst 6.757800e-01   p_cons 4.900000e-04   p_joint 4.630000e-03

Joint ci ratio: 1.251195e-01	ci left: 4.361194e-03	ci right 4.947846e-03	k: 976	n:210000
Cons ci ratio: 3.880426e-01	ci left: 3.917602e-04	ci right 5.843705e-04	k: 101	n:210000
KS ci ratio: 5.918473e-03	ci left: 6.742607e-01	ci right 6.782678e-01	k: 142016	n:210000
NOTCH1   210000 perm   85 sec   (2459 perm/sec)   p_kst 6.762667e-01   p_cons 4.809524e-04   p_joint 4.647619e-03

Joint ci ratio: 1.266389e-01	ci left: 4.061665e-03	ci right 4.615156e-03	k: 953	n:220000
Cons ci ratio: 3.736630e-01	ci left: 4.068368e-04	ci right 5.976351e-04	k: 109	n:220000
KS ci ratio: 5.912604e-03	ci left: 6.644663e-01	ci right 6.684111e-01	k: 146617	n:220000
NOTCH1   220000 perm   90 sec   (2439 perm/sec)   p_kst 6.664409e-01   p_cons 4.954545e-04   p_joint 4.331818e-03

Joint ci ratio: 1.267844e-01	ci left: 3.876627e-03	ci right 4.405555e-03	k: 951	n:230000
Cons ci ratio: 3.623112e-01	ci left: 4.167697e-04	ci right 6.048868e-04	k: 116	n:230000
KS ci ratio: 5.785662e-03	ci left: 6.642772e-01	ci right 6.681360e-01	k: 153228	n:230000
NOTCH1   230000 perm   95 sec   (2419 perm/sec)   p_kst 6.662087e-01   p_cons 5.043478e-04   p_joint 4.134783e-03

Joint ci ratio: 1.245813e-01	ci left: 3.852310e-03	ci right 4.368112e-03	k: 985	n:240000
Cons ci ratio: 3.533632e-01	ci left: 4.221574e-04	ci right 6.069208e-04	k: 122	n:240000
KS ci ratio: 5.661516e-03	ci left: 6.645012e-01	ci right 6.682781e-01	k: 159934	n:240000
NOTCH1   240000 perm   100 sec   (2396 perm/sec)   p_kst 6.663917e-01   p_cons 5.083333e-04   p_joint 4.104167e-03

Joint ci ratio: 1.223687e-01	ci left: 3.837768e-03	ci right 4.341836e-03	k: 1021	n:250000
Cons ci ratio: 3.450470e-01	ci left: 4.271666e-04	ci right 6.087402e-04	k: 128	n:250000
KS ci ratio: 5.544831e-03	ci left: 6.647241e-01	ci right 6.684241e-01	k: 166644	n:250000
NOTCH1   250000 perm   105 sec   (2374 perm/sec)   p_kst 6.665760e-01   p_cons 5.120000e-04   p_joint 4.084000e-03

Joint ci ratio: 1.212519e-01	ci left: 3.761003e-03	ci right 4.250155e-03	k: 1040	n:260000
Cons ci ratio: 3.398195e-01	ci left: 4.247988e-04	ci right 6.020299e-04	k: 132	n:260000
KS ci ratio: 5.440249e-03	ci left: 6.645069e-01	ci right 6.681356e-01	k: 173244	n:260000
NOTCH1   260000 perm   111 sec   (2352 perm/sec)   p_kst 6.663231e-01   p_cons 5.076923e-04   p_joint 4.000000e-03

Joint ci ratio: 1.208538e-01	ci left: 3.646834e-03	ci right 4.119469e-03	k: 1047	n:270000
Cons ci ratio: 3.348226e-01	ci left: 4.226255e-04	ci right 5.957976e-04	k: 136	n:270000
KS ci ratio: 5.338297e-03	ci left: 6.645623e-01	ci right 6.681230e-01	k: 179913	n:270000
NOTCH1   270000 perm   116 sec   (2330 perm/sec)   p_kst 6.663444e-01   p_cons 5.037037e-04   p_joint 3.877778e-03

Joint ci ratio: 1.195524e-01	ci left: 3.596258e-03	ci right 4.056963e-03	k: 1070	n:280000
Cons ci ratio: 3.300398e-01	ci left: 4.206251e-04	ci right 5.899930e-04	k: 140	n:280000
KS ci ratio: 5.241323e-03	ci left: 6.646608e-01	ci right 6.681572e-01	k: 186595	n:280000
NOTCH1   280000 perm   121 sec   (2309 perm/sec)   p_kst 6.664107e-01   p_cons 5.000000e-04   p_joint 3.821429e-03

Joint ci ratio: 1.192812e-01	ci left: 3.488963e-03	ci right 3.934838e-03	k: 1075	n:290000
Cons ci ratio: 3.199833e-01	ci left: 4.346246e-04	ci right 6.032049e-04	k: 149	n:290000
KS ci ratio: 5.151246e-03	ci left: 6.645977e-01	ci right 6.680335e-01	k: 193232	n:290000
NOTCH1   290000 perm   127 sec   (2289 perm/sec)   p_kst 6.663172e-01   p_cons 5.137931e-04   p_joint 3.706897e-03

Joint ci ratio: 1.205316e-01	ci left: 3.301512e-03	ci right 3.728168e-03	k: 1053	n:300000
Cons ci ratio: 3.168319e-01	ci left: 4.293378e-04	ci right 5.938949e-04	k: 152	n:300000
KS ci ratio: 5.065848e-03	ci left: 6.645226e-01	ci right 6.679008e-01	k: 199864	n:300000
NOTCH1   300000 perm   132 sec   (2269 perm/sec)   p_kst 6.662133e-01   p_cons 5.066667e-04   p_joint 3.510000e-03

Joint ci ratio: 1.180362e-01	ci left: 3.335845e-03	ci right 3.757391e-03	k: 1098	n:310000
Cons ci ratio: 3.088585e-01	ci left: 4.392694e-04	ci right 6.025622e-04	k: 160	n:310000
KS ci ratio: 4.982681e-03	ci left: 6.646208e-01	ci right 6.679438e-01	k: 206548	n:310000
NOTCH1   310000 perm   138 sec   (2250 perm/sec)   p_kst 6.662839e-01   p_cons 5.161290e-04   p_joint 3.541935e-03

Joint ci ratio: 1.082079e-01	ci left: 3.863296e-03	ci right 4.308259e-03	k: 1306	n:320000
Cons ci ratio: 3.014584e-01	ci left: 4.486288e-04	ci right 6.106397e-04	k: 168	n:320000
KS ci ratio: 4.903859e-03	ci left: 6.646788e-01	ci right 6.679494e-01	k: 213221	n:320000
NOTCH1   320000 perm   143 sec   (2233 perm/sec)   p_kst 6.663156e-01   p_cons 5.250000e-04   p_joint 4.081250e-03

Joint ci ratio: 1.119294e-01	ci left: 3.495702e-03	ci right 3.913088e-03	k: 1221	n:330000
Cons ci ratio: 3.005724e-01	ci left: 4.378351e-04	ci right 5.953945e-04	k: 169	n:330000
KS ci ratio: 4.828104e-03	ci left: 6.647853e-01	ci right 6.680057e-01	k: 219911	n:330000
NOTCH1   330000 perm   149 sec   (2215 perm/sec)   p_kst 6.663970e-01   p_cons 5.121212e-04   p_joint 3.700000e-03

Joint ci ratio: 1.103164e-01	ci left: 3.495827e-03	ci right 3.906821e-03	k: 1257	n:340000
Cons ci ratio: 2.954042e-01	ci left: 4.412857e-04	ci right 5.968451e-04	k: 175	n:340000
KS ci ratio: 4.755533e-03	ci left: 6.649065e-01	ci right 6.680789e-01	k: 226608	n:340000
NOTCH1   340000 perm   155 sec   (2198 perm/sec)   p_kst 6.664941e-01   p_cons 5.147059e-04   p_joint 3.697059e-03

Joint ci ratio: 1.088980e-01	ci left: 3.487646e-03	ci right 3.892068e-03	k: 1290	n:350000
Cons ci ratio: 2.896986e-01	ci left: 4.472104e-04	ci right 6.012555e-04	k: 182	n:350000
KS ci ratio: 4.687796e-03	ci left: 6.648638e-01	ci right 6.679906e-01	k: 233250	n:350000
NOTCH1   350000 perm   160 sec   (2181 perm/sec)   p_kst 6.664286e-01   p_cons 5.200000e-04   p_joint 3.685714e-03

Joint ci ratio: 1.118549e-01	ci left: 3.209767e-03	ci right 3.592739e-03	k: 1223	n:360000
Cons ci ratio: 2.865839e-01	ci left: 4.450960e-04	ci right 5.964660e-04	k: 186	n:360000
KS ci ratio: 4.622267e-03	ci left: 6.648821e-01	ci right 6.679652e-01	k: 239913	n:360000
NOTCH1   360000 perm   166 sec   (2164 perm/sec)   p_kst 6.664250e-01   p_cons 5.166667e-04   p_joint 3.397222e-03

Joint ci ratio: 1.127414e-01	ci left: 3.073096e-03	ci right 3.442860e-03	k: 1204	n:370000
Cons ci ratio: 2.843133e-01	ci left: 4.405939e-04	ci right 5.890325e-04	k: 189	n:370000
KS ci ratio: 4.559965e-03	ci left: 6.648456e-01	ci right 6.678869e-01	k: 246556	n:370000
NOTCH1   370000 perm   172 sec   (2147 perm/sec)   p_kst 6.663676e-01   p_cons 5.108108e-04   p_joint 3.254054e-03

Joint ci ratio: 9.647018e-02	ci left: 4.117542e-03	ci right 4.537440e-03	k: 1643	n:380000
Cons ci ratio: 2.799274e-01	ci left: 4.436719e-04	ci right 5.904352e-04	k: 195	n:380000
KS ci ratio: 4.500303e-03	ci left: 6.647929e-01	ci right 6.677940e-01	k: 253192	n:380000
NOTCH1   380000 perm   178 sec   (2130 perm/sec)   p_kst 6.662947e-01   p_cons 5.131579e-04   p_joint 4.323684e-03

Joint ci ratio: 9.560348e-02	ci left: 4.087037e-03	ci right 4.499869e-03	k: 1673	n:390000
Cons ci ratio: 2.737124e-01	ci left: 4.537715e-04	ci right 5.999698e-04	k: 204	n:390000
KS ci ratio: 4.441437e-03	ci left: 6.648920e-01	ci right 6.678542e-01	k: 259886	n:390000
NOTCH1   390000 perm   185 sec   (2113 perm/sec)   p_kst 6.663744e-01   p_cons 5.230769e-04   p_joint 4.289744e-03

Joint ci ratio: 9.671725e-02	ci left: 3.892126e-03	ci right 4.290110e-03	k: 1635	n:400000
Cons ci ratio: 2.710809e-01	ci left: 4.517442e-04	ci right 5.956520e-04	k: 208	n:400000
KS ci ratio: 4.386079e-03	ci left: 6.648588e-01	ci right 6.677838e-01	k: 266529	n:400000
NOTCH1   400000 perm   191 sec   (2097 perm/sec)   p_kst 6.663225e-01   p_cons 5.200000e-04   p_joint 4.087500e-03

Joint ci ratio: 9.567094e-02	ci left: 3.882888e-03	ci right 4.275391e-03	k: 1671	n:410000
Cons ci ratio: 2.697942e-01	ci left: 4.452732e-04	ci right 5.863322e-04	k: 210	n:410000
KS ci ratio: 4.333193e-03	ci left: 6.647810e-01	ci right 6.676703e-01	k: 273153	n:410000
NOTCH1   410000 perm   197 sec   (2080 perm/sec)   p_kst 6.662268e-01   p_cons 5.121951e-04   p_joint 4.075610e-03

Joint ci ratio: 9.463006e-02	ci left: 3.876437e-03	ci right 4.263788e-03	k: 1708	n:420000
Cons ci ratio: 2.660379e-01	ci left: 4.479978e-04	ci right 5.876148e-04	k: 216	n:420000
KS ci ratio: 4.280661e-03	ci left: 6.648645e-01	ci right 6.677190e-01	k: 279843	n:420000
NOTCH1   420000 perm   203 sec   (2065 perm/sec)   p_kst 6.662929e-01   p_cons 5.142857e-04   p_joint 4.066667e-03

Joint ci ratio: 9.679052e-02	ci left: 3.616019e-03	ci right 3.986065e-03	k: 1633	n:430000
Cons ci ratio: 2.636197e-01	ci left: 4.462640e-04	ci right 5.838678e-04	k: 220	n:430000
KS ci ratio: 4.228800e-03	ci left: 6.650699e-01	ci right 6.678906e-01	k: 286587	n:430000
NOTCH1   430000 perm   210 sec   (2050 perm/sec)   p_kst 6.664814e-01   p_cons 5.116279e-04   p_joint 3.797674e-03

Joint ci ratio: 1.161542e-01	ci left: 2.431817e-03	ci right 2.733884e-03	k: 1135	n:440000
Cons ci ratio: 3.079272e-01	ci left: 3.115788e-04	ci right 4.269858e-04	k: 161	n:440000
KS ci ratio: 4.180615e-03	ci left: 6.650706e-01	ci right 6.678590e-01	k: 293245	n:440000
NOTCH1   440000 perm   216 sec   (2034 perm/sec)   p_kst 6.664659e-01   p_cons 3.659091e-04   p_joint 2.579545e-03

Joint ci ratio: 1.154466e-01	ci left: 2.407985e-03	ci right 2.705145e-03	k: 1149	n:450000
Cons ci ratio: 3.051153e-01	ci left: 3.108088e-04	ci right 4.246751e-04	k: 164	n:450000
KS ci ratio: 4.135011e-03	ci left: 6.649668e-01	ci right 6.677244e-01	k: 299856	n:450000
NOTCH1   450000 perm   223 sec   (2019 perm/sec)   p_kst 6.663467e-01   p_cons 3.644444e-04   p_joint 2.553333e-03

Joint ci ratio: 1.043454e-01	ci left: 2.899051e-03	ci right 3.220303e-03	k: 1406	n:460000
Cons ci ratio: 3.014827e-01	ci left: 3.120861e-04	ci right 4.247984e-04	k: 168	n:460000
KS ci ratio: 4.091328e-03	ci left: 6.648177e-01	ci right 6.675454e-01	k: 306444	n:460000
NOTCH1   460000 perm   230 sec   (2004 perm/sec)   p_kst 6.661826e-01   p_cons 3.652174e-04   p_joint 3.056522e-03

Joint ci ratio: 1.032505e-01	ci left: 2.899542e-03	ci right 3.217272e-03	k: 1436	n:470000
Cons ci ratio: 2.988422e-01	ci left: 3.113483e-04	ci right 4.226224e-04	k: 171	n:470000
KS ci ratio: 4.047198e-03	ci left: 6.648732e-01	ci right 6.675716e-01	k: 313125	n:470000
NOTCH1   470000 perm   236 sec   (1992 perm/sec)   p_kst 6.662234e-01   p_cons 3.638298e-04   p_joint 3.055319e-03

Joint ci ratio: 1.022944e-01	ci left: 2.893938e-03	ci right 3.207941e-03	k: 1463	n:480000
Cons ci ratio: 2.929396e-01	ci left: 3.183632e-04	ci right 4.294800e-04	k: 178	n:480000
KS ci ratio: 4.004728e-03	ci left: 6.648973e-01	ci right 6.675674e-01	k: 319792	n:480000
NOTCH1   480000 perm   243 sec   (1978 perm/sec)   p_kst 6.662333e-01   p_cons 3.708333e-04   p_joint 3.047917e-03

Joint ci ratio: 1.021228e-01	ci left: 2.844818e-03	ci right 3.152942e-03	k: 1468	n:490000
Cons ci ratio: 2.881494e-01	ci left: 3.232187e-04	ci right 4.338497e-04	k: 184	n:490000
KS ci ratio: 3.963714e-03	ci left: 6.649042e-01	ci right 6.675469e-01	k: 326451	n:490000
NOTCH1   490000 perm   249 sec   (1964 perm/sec)   p_kst 6.662265e-01   p_cons 3.755102e-04   p_joint 2.995918e-03

Joint ci ratio: 1.026883e-01	ci left: 2.756735e-03	ci right 3.057071e-03	k: 1452	n:500000
Cons ci ratio: 2.971224e-01	ci left: 2.963681e-04	ci right 4.015637e-04	k: 173	n:500000
KS ci ratio: 3.921729e-03	ci left: 6.651612e-01	ci right 6.677769e-01	k: 333235	n:500000
NOTCH1   500000 perm   256 sec   (1951 perm/sec)   p_kst 6.664700e-01   p_cons 3.460000e-04   p_joint 2.904000e-03

Joint ci ratio: 1.019203e-01	ci left: 2.744714e-03	ci right 3.041371e-03	k: 1474	n:510000
Cons ci ratio: 2.971234e-01	ci left: 2.905568e-04	ci right 3.936901e-04	k: 173	n:510000
KS ci ratio: 3.882263e-03	ci left: 6.652689e-01	ci right 6.678586e-01	k: 339948	n:510000
NOTCH1   510000 perm   263 sec   (1936 perm/sec)   p_kst 6.665647e-01   p_cons 3.392157e-04   p_joint 2.890196e-03

Joint ci ratio: 1.013392e-01	ci left: 2.723790e-03	ci right 3.016407e-03	k: 1491	n:520000
Cons ci ratio: 2.954308e-01	ci left: 2.885295e-04	ci right 3.902504e-04	k: 175	n:520000
KS ci ratio: 3.844381e-03	ci left: 6.653245e-01	ci right 6.678890e-01	k: 346636	n:520000
NOTCH1   520000 perm   270 sec   (1923 perm/sec)   p_kst 6.666077e-01   p_cons 3.365385e-04   p_joint 2.867308e-03

Joint ci ratio: 1.005343e-01	ci left: 2.716538e-03	ci right 3.005920e-03	k: 1515	n:530000
Cons ci ratio: 2.905196e-01	ci left: 2.935745e-04	ci right 3.950374e-04	k: 181	n:530000
KS ci ratio: 3.809251e-03	ci left: 6.651835e-01	ci right 6.677241e-01	k: 353221	n:530000
NOTCH1   530000 perm   278 sec   (1909 perm/sec)   p_kst 6.664547e-01   p_cons 3.415094e-04   p_joint 2.858491e-03

Joint ci ratio: 9.965093e-02	ci left: 2.714979e-03	ci right 3.001507e-03	k: 1542	n:540000
Cons ci ratio: 2.889367e-01	ci left: 2.915725e-04	ci right 3.916940e-04	k: 183	n:540000
KS ci ratio: 3.773588e-03	ci left: 6.652222e-01	ci right 6.677390e-01	k: 359900	n:540000
NOTCH1   540000 perm   285 sec   (1896 perm/sec)   p_kst 6.664815e-01   p_cons 3.388889e-04   p_joint 2.855556e-03

Joint ci ratio: 1.015864e-01	ci left: 2.562805e-03	ci right 2.838839e-03	k: 1484	n:550000
Cons ci ratio: 2.873795e-01	ci left: 2.896447e-04	ci right 3.884709e-04	k: 185	n:550000
KS ci ratio: 3.739001e-03	ci left: 6.652486e-01	ci right 6.677424e-01	k: 366573	n:550000
NOTCH1   550000 perm   292 sec   (1883 perm/sec)   p_kst 6.664964e-01   p_cons 3.363636e-04   p_joint 2.698182e-03

Joint ci ratio: 9.216957e-02	ci left: 3.071206e-03	ci right 3.369684e-03	k: 1802	n:560000
Cons ci ratio: 2.835926e-01	ci left: 2.927619e-04	ci right 3.910999e-04	k: 190	n:560000
KS ci ratio: 3.705957e-03	ci left: 6.652009e-01	ci right 6.676724e-01	k: 373205	n:560000
NOTCH1   560000 perm   299 sec   (1870 perm/sec)   p_kst 6.664375e-01   p_cons 3.392857e-04   p_joint 3.217857e-03

Joint ci ratio: 9.148752e-02	ci left: 3.063606e-03	ci right 3.359023e-03	k: 1829	n:570000
Cons ci ratio: 2.835935e-01	ci left: 2.876257e-04	ci right 3.842387e-04	k: 190	n:570000
KS ci ratio: 3.673658e-03	ci left: 6.651690e-01	ci right 6.676188e-01	k: 379845	n:570000
NOTCH1   570000 perm   307 sec   (1857 perm/sec)   p_kst 6.663947e-01   p_cons 3.333333e-04   p_joint 3.208772e-03

Joint ci ratio: 9.052743e-02	ci left: 3.076497e-03	ci right 3.369879e-03	k: 1868	n:580000
Cons ci ratio: 2.799524e-01	ci left: 2.906783e-04	ci right 3.868420e-04	k: 195	n:580000
KS ci ratio: 3.643220e-03	ci left: 6.650123e-01	ci right 6.674412e-01	k: 386412	n:580000
NOTCH1   580000 perm   315 sec   (1844 perm/sec)   p_kst 6.662276e-01   p_cons 3.362069e-04   p_joint 3.220690e-03

Joint ci ratio: 9.092115e-02	ci left: 2.997844e-03	ci right 3.285035e-03	k: 1852	n:590000
Cons ci ratio: 2.771386e-01	ci left: 2.920577e-04	ci right 3.875373e-04	k: 199	n:590000
KS ci ratio: 3.611075e-03	ci left: 6.651630e-01	ci right 6.675710e-01	k: 393157	n:590000
NOTCH1   590000 perm   322 sec   (1831 perm/sec)   p_kst 6.663678e-01   p_cons 3.372881e-04   p_joint 3.138983e-03

Joint ci ratio: 9.151998e-02	ci left: 2.908786e-03	ci right 3.189379e-03	k: 1828	n:600000
Cons ci ratio: 2.744080e-01	ci left: 2.933958e-04	ci right 3.882048e-04	k: 203	n:600000
KS ci ratio: 3.581617e-03	ci left: 6.650786e-01	ci right 6.674665e-01	k: 399764	n:600000
NOTCH1   600000 perm   330 sec   (1818 perm/sec)   p_kst 6.662733e-01   p_cons 3.383333e-04   p_joint 3.046667e-03

Joint ci ratio: 9.114815e-02	ci left: 2.885128e-03	ci right 3.162248e-03	k: 1843	n:610000
Cons ci ratio: 2.724124e-01	ci left: 2.931670e-04	ci right 3.870951e-04	k: 206	n:610000
KS ci ratio: 3.552279e-03	ci left: 6.650708e-01	ci right 6.674391e-01	k: 406416	n:610000
NOTCH1   610000 perm   338 sec   (1806 perm/sec)   p_kst 6.662557e-01   p_cons 3.377049e-04   p_joint 3.021311e-03

Joint ci ratio: 9.063420e-02	ci left: 2.871694e-03	ci right 3.145886e-03	k: 1864	n:620000
Cons ci ratio: 2.717573e-01	ci left: 2.899413e-04	ci right 3.825744e-04	k: 207	n:620000
KS ci ratio: 3.522704e-03	ci left: 6.651828e-01	ci right 6.675318e-01	k: 413142	n:620000
NOTCH1   620000 perm   345 sec   (1795 perm/sec)   p_kst 6.663581e-01   p_cons 3.338710e-04   p_joint 3.006452e-03

Joint ci ratio: 9.387192e-02	ci left: 2.630709e-03	ci right 2.891357e-03	k: 1738	n:630000
Cons ci ratio: 2.685484e-01	ci left: 2.927381e-04	ci right 3.849745e-04	k: 212	n:630000
KS ci ratio: 3.494891e-03	ci left: 6.651595e-01	ci right 6.674898e-01	k: 419785	n:630000
NOTCH1   630000 perm   353 sec   (1784 perm/sec)   p_kst 6.663254e-01   p_cons 3.365079e-04   p_joint 2.758730e-03

Joint ci ratio: 9.320455e-02	ci left: 2.627753e-03	ci right 2.886156e-03	k: 1763	n:640000
Cons ci ratio: 2.666770e-01	ci left: 2.925371e-04	ci right 3.839605e-04	k: 215	n:640000
KS ci ratio: 3.467641e-03	ci left: 6.651479e-01	ci right 6.674599e-01	k: 426435	n:640000
NOTCH1   640000 perm   361 sec   (1773 perm/sec)   p_kst 6.663047e-01   p_cons 3.359375e-04   p_joint 2.754688e-03

Joint ci ratio: 9.643971e-02	ci left: 2.413082e-03	ci right 2.659077e-03	k: 1647	n:650000
Cons ci ratio: 2.648442e-01	ci left: 2.923445e-04	ci right 3.829756e-04	k: 218	n:650000
KS ci ratio: 3.440579e-03	ci left: 6.651937e-01	ci right 6.674878e-01	k: 433122	n:650000
NOTCH1   650000 perm   369 sec   (1762 perm/sec)   p_kst 6.663415e-01   p_cons 3.353846e-04   p_joint 2.533846e-03

Joint ci ratio: 9.554485e-02	ci left: 2.422363e-03	ci right 2.666885e-03	k: 1678	n:660000
Cons ci ratio: 2.636434e-01	ci left: 2.907446e-04	ci right 3.804035e-04	k: 220	n:660000
KS ci ratio: 3.414664e-03	ci left: 6.651700e-01	ci right 6.674467e-01	k: 439764	n:660000
NOTCH1   660000 perm   377 sec   (1751 perm/sec)   p_kst 6.663091e-01   p_cons 3.333333e-04   p_joint 2.542424e-03

Joint ci ratio: 9.464670e-02	ci left: 2.432834e-03	ci right 2.675976e-03	k: 1710	n:670000
Cons ci ratio: 2.607103e-01	ci left: 2.933774e-04	ci right 3.826778e-04	k: 225	n:670000
KS ci ratio: 3.388893e-03	ci left: 6.652038e-01	ci right 6.674634e-01	k: 446444	n:670000
NOTCH1   670000 perm   385 sec   (1741 perm/sec)   p_kst 6.663343e-01   p_cons 3.358209e-04   p_joint 2.552239e-03

Joint ci ratio: 9.470399e-02	ci left: 2.394183e-03	ci right 2.633616e-03	k: 1708	n:680000
Cons ci ratio: 2.595646e-01	ci left: 2.918124e-04	ci right 3.801828e-04	k: 227	n:680000
KS ci ratio: 3.363897e-03	ci left: 6.652102e-01	ci right 6.674531e-01	k: 453106	n:680000
NOTCH1   680000 perm   393 sec   (1731 perm/sec)   p_kst 6.663324e-01   p_cons 3.338235e-04   p_joint 2.511765e-03

Joint ci ratio: 9.453950e-02	ci left: 2.367973e-03	ci right 2.604350e-03	k: 1714	n:690000
Cons ci ratio: 2.578737e-01	ci left: 2.916491e-04	ci right 3.793020e-04	k: 230	n:690000
KS ci ratio: 3.339077e-03	ci left: 6.652658e-01	ci right 6.674923e-01	k: 459802	n:690000
NOTCH1   690000 perm   401 sec   (1720 perm/sec)   p_kst 6.663797e-01   p_cons 3.333333e-04   p_joint 2.484058e-03

Joint ci ratio: 9.484659e-02	ci left: 2.318800e-03	ci right 2.551062e-03	k: 1703	n:700000
Cons ci ratio: 2.545881e-01	ci left: 2.955038e-04	ci right 3.830040e-04	k: 236	n:700000
KS ci ratio: 3.316129e-03	ci left: 6.651411e-01	ci right 6.673518e-01	k: 466373	n:700000
NOTCH1   700000 perm   409 sec   (1710 perm/sec)   p_kst 6.662471e-01   p_cons 3.371429e-04   p_joint 2.432857e-03

Joint ci ratio: 9.440497e-02	ci left: 2.308142e-03	ci right 2.538201e-03	k: 1719	n:710000
Cons ci ratio: 2.529920e-01	ci left: 2.952984e-04	ci right 3.821032e-04	k: 239	n:710000
KS ci ratio: 3.291999e-03	ci left: 6.652427e-01	ci right 6.674376e-01	k: 473102	n:710000
NOTCH1   710000 perm   418 sec   (1700 perm/sec)   p_kst 6.663408e-01   p_cons 3.366197e-04   p_joint 2.421127e-03

Joint ci ratio: 9.396946e-02	ci left: 2.297783e-03	ci right 2.525694e-03	k: 1735	n:720000
Cons ci ratio: 2.524670e-01	ci left: 2.924979e-04	ci right 3.782729e-04	k: 240	n:720000
KS ci ratio: 3.268634e-03	ci left: 6.653082e-01	ci right 6.674877e-01	k: 479807	n:720000
NOTCH1   720000 perm   426 sec   (1689 perm/sec)   p_kst 6.663986e-01   p_cons 3.333333e-04   p_joint 2.409722e-03

Joint ci ratio: 9.476777e-02	ci left: 2.227514e-03	ci right 2.450437e-03	k: 1706	n:730000
Cons ci ratio: 2.503974e-01	ci left: 2.936253e-04	ci right 3.789151e-04	k: 244	n:730000
KS ci ratio: 3.246429e-03	ci left: 6.652800e-01	ci right 6.674447e-01	k: 486445	n:730000
NOTCH1   730000 perm   435 sec   (1678 perm/sec)   p_kst 6.663630e-01   p_cons 3.342466e-04   p_joint 2.336986e-03

Joint ci ratio: 9.402683e-02	ci left: 2.233038e-03	ci right 2.454670e-03	k: 1733	n:740000
Cons ci ratio: 2.493818e-01	ci left: 2.921908e-04	ci right 3.766663e-04	k: 246	n:740000
KS ci ratio: 3.224601e-03	ci left: 6.652622e-01	ci right 6.674122e-01	k: 493090	n:740000
NOTCH1   740000 perm   444 sec   (1668 perm/sec)   p_kst 6.663378e-01   p_cons 3.324324e-04   p_joint 2.341892e-03

Joint ci ratio: 9.454893e-02	ci left: 2.178525e-03	ci right 2.396014e-03	k: 1714	n:750000
Cons ci ratio: 2.473866e-01	ci left: 2.932963e-04	ci right 3.773086e-04	k: 250	n:750000
KS ci ratio: 3.202728e-03	ci left: 6.653116e-01	ci right 6.674471e-01	k: 499785	n:750000
NOTCH1   750000 perm   452 sec   (1658 perm/sec)   p_kst 6.663800e-01   p_cons 3.333333e-04   p_joint 2.285333e-03

Joint ci ratio: 8.597913e-02	ci left: 2.610327e-03	ci right 2.846120e-03	k: 2072	n:760000
Cons ci ratio: 2.464071e-01	ci left: 2.919059e-04	ci right 3.751382e-04	k: 252	n:760000
KS ci ratio: 3.181454e-03	ci left: 6.653374e-01	ci right 6.674587e-01	k: 506463	n:760000
NOTCH1   760000 perm   461 sec   (1649 perm/sec)   p_kst 6.663987e-01   p_cons 3.315789e-04   p_joint 2.726316e-03

Joint ci ratio: 8.633634e-02	ci left: 2.554822e-03	ci right 2.786607e-03	k: 2055	n:770000
Cons ci ratio: 2.435358e-01	ci left: 2.954289e-04	ci right 3.785357e-04	k: 258	n:770000
KS ci ratio: 3.160441e-03	ci left: 6.653846e-01	ci right 6.674921e-01	k: 513158	n:770000
NOTCH1   770000 perm   470 sec   (1639 perm/sec)   p_kst 6.664390e-01   p_cons 3.350649e-04   p_joint 2.668831e-03

Joint ci ratio: 8.765127e-02	ci left: 2.445558e-03	ci right 2.670982e-03	k: 1994	n:780000
Cons ci ratio: 2.426012e-01	ci left: 2.940493e-04	ci right 3.764027e-04	k: 260	n:780000
KS ci ratio: 3.140338e-03	ci left: 6.653601e-01	ci right 6.674541e-01	k: 519798	n:780000
NOTCH1   780000 perm   479 sec   (1629 perm/sec)   p_kst 6.664077e-01   p_cons 3.333333e-04   p_joint 2.556410e-03

Joint ci ratio: 8.872929e-02	ci left: 2.355177e-03	ci right 2.575079e-03	k: 1946	n:790000
Cons ci ratio: 2.416772e-01	ci left: 2.927052e-04	ci right 3.743231e-04	k: 262	n:790000
KS ci ratio: 3.120453e-03	ci left: 6.653590e-01	ci right 6.674397e-01	k: 526456	n:790000
NOTCH1   790000 perm   488 sec   (1618 perm/sec)   p_kst 6.664000e-01   p_cons 3.316456e-04   p_joint 2.463291e-03

Joint ci ratio: 8.900603e-02	ci left: 2.311068e-03	ci right 2.527560e-03	k: 1934	n:800000
Cons ci ratio: 2.407636e-01	ci left: 2.913952e-04	ci right 3.722949e-04	k: 264	n:800000
KS ci ratio: 3.101482e-03	ci left: 6.652805e-01	ci right 6.673483e-01	k: 533052	n:800000
NOTCH1   800000 perm   497 sec   (1608 perm/sec)   p_kst 6.663150e-01   p_cons 3.300000e-04   p_joint 2.417500e-03

Joint ci ratio: 8.841392e-02	ci left: 2.313923e-03	ci right 2.529166e-03	k: 1960	n:810000
Cons ci ratio: 2.398604e-01	ci left: 2.901182e-04	ci right 3.703163e-04	k: 266	n:810000
KS ci ratio: 3.082270e-03	ci left: 6.652880e-01	ci right 6.673429e-01	k: 539716	n:810000
NOTCH1   810000 perm   507 sec   (1599 perm/sec)   p_kst 6.663160e-01   p_cons 3.283951e-04   p_joint 2.419753e-03

Joint ci ratio: 8.796671e-02	ci left: 2.309557e-03	ci right 2.523251e-03	k: 1980	n:820000
Cons ci ratio: 2.389673e-01	ci left: 2.888729e-04	ci right 3.683853e-04	k: 268	n:820000
KS ci ratio: 3.063604e-03	ci left: 6.652672e-01	ci right 6.673097e-01	k: 546357	n:820000
NOTCH1   820000 perm   516 sec   (1589 perm/sec)   p_kst 6.662890e-01   p_cons 3.268293e-04   p_joint 2.414634e-03

Joint ci ratio: 8.750429e-02	ci left: 2.306477e-03	ci right 2.518706e-03	k: 2001	n:830000
Cons ci ratio: 2.380840e-01	ci left: 2.876581e-04	ci right 3.665003e-04	k: 270	n:830000
KS ci ratio: 3.045298e-03	ci left: 6.652434e-01	ci right 6.672735e-01	k: 552995	n:830000
NOTCH1   830000 perm   525 sec   (1580 perm/sec)   p_kst 6.662590e-01   p_cons 3.253012e-04   p_joint 2.410843e-03

Joint ci ratio: 8.689852e-02	ci left: 2.311625e-03	ci right 2.522782e-03	k: 2029	n:840000
Cons ci ratio: 2.359174e-01	ci left: 2.898326e-04	ci right 3.684423e-04	k: 275	n:840000
KS ci ratio: 3.027406e-03	ci left: 6.652071e-01	ci right 6.672251e-01	k: 559622	n:840000
NOTCH1   840000 perm   535 sec   (1570 perm/sec)   p_kst 6.662167e-01   p_cons 3.273810e-04   p_joint 2.415476e-03

Joint ci ratio: 8.746300e-02	ci left: 2.254506e-03	ci right 2.461850e-03	k: 2003	n:850000
Cons ci ratio: 2.350674e-01	ci left: 2.886369e-04	ci right 3.665993e-04	k: 277	n:850000
KS ci ratio: 3.009793e-03	ci left: 6.651763e-01	ci right 6.671825e-01	k: 566253	n:850000
NOTCH1   850000 perm   545 sec   (1561 perm/sec)   p_kst 6.661800e-01   p_cons 3.258824e-04   p_joint 2.356471e-03

Joint ci ratio: 8.687952e-02	ci left: 2.259002e-03	ci right 2.465303e-03	k: 2030	n:860000
Cons ci ratio: 2.333942e-01	ci left: 2.896589e-04	ci right 3.672601e-04	k: 281	n:860000
KS ci ratio: 2.992124e-03	ci left: 6.651999e-01	ci right 6.671944e-01	k: 572930	n:860000
NOTCH1   860000 perm   554 sec   (1552 perm/sec)   p_kst 6.661977e-01   p_cons 3.267442e-04   p_joint 2.360465e-03

Joint ci ratio: 8.634963e-02	ci left: 2.261149e-03	ci right 2.466324e-03	k: 2055	n:870000
Cons ci ratio: 2.305498e-01	ci left: 2.939080e-04	ci right 3.715513e-04	k: 288	n:870000
KS ci ratio: 2.975193e-03	ci left: 6.651585e-01	ci right 6.671415e-01	k: 579551	n:870000
NOTCH1   870000 perm   564 sec   (1542 perm/sec)   p_kst 6.661506e-01   p_cons 3.310345e-04   p_joint 2.362069e-03

Joint ci ratio: 8.635079e-02	ci left: 2.235453e-03	ci right 2.438299e-03	k: 2055	n:880000
Cons ci ratio: 2.297563e-01	ci left: 2.927098e-04	ci right 3.697327e-04	k: 290	n:880000
KS ci ratio: 2.957859e-03	ci left: 6.652216e-01	ci right 6.671932e-01	k: 586263	n:880000
NOTCH1   880000 perm   574 sec   (1532 perm/sec)   p_kst 6.662080e-01   p_cons 3.295455e-04   p_joint 2.335227e-03

Joint ci ratio: 8.591327e-02	ci left: 2.233423e-03	ci right 2.435007e-03	k: 2076	n:890000
Cons ci ratio: 2.278074e-01	ci left: 2.947170e-04	ci right 3.715178e-04	k: 295	n:890000
KS ci ratio: 2.941567e-03	ci left: 6.651708e-01	ci right 6.671315e-01	k: 592875	n:890000
NOTCH1   890000 perm   584 sec   (1524 perm/sec)   p_kst 6.661517e-01   p_cons 3.314607e-04   p_joint 2.332584e-03

Joint ci ratio: 9.079880e-02	ci left: 1.972807e-03	ci right 2.161532e-03	k: 1859	n:900000
Cons ci ratio: 2.266617e-01	ci left: 2.945859e-04	ci right 3.709125e-04	k: 298	n:900000
KS ci ratio: 2.925833e-03	ci left: 6.650768e-01	ci right 6.670266e-01	k: 599447	n:900000
NOTCH1   900000 perm   594 sec   (1516 perm/sec)   p_kst 6.660522e-01   p_cons 3.311111e-04   p_joint 2.065556e-03

Joint ci ratio: 9.266559e-02	ci left: 1.871670e-03	ci right 2.054600e-03	k: 1785	n:910000
Cons ci ratio: 2.262839e-01	ci left: 2.923853e-04	ci right 3.679978e-04	k: 299	n:910000
KS ci ratio: 2.909688e-03	ci left: 6.650860e-01	ci right 6.670251e-01	k: 606111	n:910000
NOTCH1   910000 perm   604 sec   (1508 perm/sec)   p_kst 6.660560e-01   p_cons 3.285714e-04   p_joint 1.961538e-03

Joint ci ratio: 9.225347e-02	ci left: 1.868315e-03	ci right 2.050061e-03	k: 1801	n:920000
Cons ci ratio: 2.247901e-01	ci left: 2.933094e-04	ci right 3.685908e-04	k: 303	n:920000
KS ci ratio: 2.893595e-03	ci left: 6.651276e-01	ci right 6.670561e-01	k: 612805	n:920000
NOTCH1   920000 perm   613 sec   (1500 perm/sec)   p_kst 6.660924e-01   p_cons 3.293478e-04   p_joint 1.957609e-03

Joint ci ratio: 9.182149e-02	ci left: 1.866084e-03	ci right 2.046718e-03	k: 1818	n:930000
Cons ci ratio: 2.233256e-01	ci left: 2.942152e-04	ci right 3.691695e-04	k: 307	n:930000
KS ci ratio: 2.877794e-03	ci left: 6.651641e-01	ci right 6.670821e-01	k: 619495	n:930000
NOTCH1   930000 perm   624 sec   (1492 perm/sec)   p_kst 6.661237e-01   p_cons 3.301075e-04   p_joint 1.954839e-03

Joint ci ratio: 9.132081e-02	ci left: 1.867022e-03	ci right 2.046708e-03	k: 1838	n:940000
Cons ci ratio: 2.218893e-01	ci left: 2.951033e-04	ci right 3.697344e-04	k: 311	n:940000
KS ci ratio: 2.862851e-03	ci left: 6.651062e-01	ci right 6.670141e-01	k: 626097	n:940000
NOTCH1   940000 perm   634 sec   (1484 perm/sec)   p_kst 6.660606e-01   p_cons 3.308511e-04   p_joint 1.955319e-03

Joint ci ratio: 9.087721e-02	ci left: 1.865884e-03	ci right 2.044542e-03	k: 1856	n:950000
Cons ci ratio: 2.218897e-01	ci left: 2.919969e-04	ci right 3.658425e-04	k: 311	n:950000
KS ci ratio: 2.847687e-03	ci left: 6.651201e-01	ci right 6.670179e-01	k: 632766	n:950000
NOTCH1   950000 perm   644 sec   (1475 perm/sec)   p_kst 6.660695e-01   p_cons 3.273684e-04   p_joint 1.953684e-03

Joint ci ratio: 9.063396e-02	ci left: 1.856628e-03	ci right 2.033899e-03	k: 1866	n:960000
Cons ci ratio: 2.201327e-01	ci left: 2.938754e-04	ci right 3.675278e-04	k: 316	n:960000
KS ci ratio: 2.832549e-03	ci left: 6.651671e-01	ci right 6.670549e-01	k: 639467	n:960000
NOTCH1   960000 perm   654 sec   (1468 perm/sec)   p_kst 6.661115e-01   p_cons 3.291667e-04   p_joint 1.943750e-03

Joint ci ratio: 9.195191e-02	ci left: 1.784093e-03	ci right 1.957048e-03	k: 1813	n:970000
Cons ci ratio: 2.187567e-01	ci left: 2.947428e-04	ci right 3.680888e-04	k: 320	n:970000
KS ci ratio: 2.818434e-03	ci left: 6.650893e-01	ci right 6.669674e-01	k: 646048	n:970000
NOTCH1   970000 perm   664 sec   (1460 perm/sec)   p_kst 6.660289e-01   p_cons 3.298969e-04   p_joint 1.869072e-03

Joint ci ratio: 9.262016e-02	ci left: 1.739968e-03	ci right 1.909937e-03	k: 1787	n:980000
Cons ci ratio: 2.174063e-01	ci left: 2.955939e-04	ci right 3.686370e-04	k: 324	n:980000
KS ci ratio: 2.804475e-03	ci left: 6.650213e-01	ci right 6.668900e-01	k: 652637	n:980000
NOTCH1   980000 perm   675 sec   (1453 perm/sec)   p_kst 6.659561e-01   p_cons 3.306122e-04   p_joint 1.823469e-03

Joint ci ratio: 9.208087e-02	ci left: 1.743114e-03	ci right 1.912347e-03	k: 1808	n:990000
Cons ci ratio: 2.164098e-01	ci left: 2.954738e-04	ci right 3.681081e-04	k: 327	n:990000
KS ci ratio: 2.790171e-03	ci left: 6.650427e-01	ci right 6.669018e-01	k: 659313	n:990000
NOTCH1   990000 perm   685 sec   (1445 perm/sec)   p_kst 6.659727e-01   p_cons 3.303030e-04   p_joint 1.826263e-03

Joint ci ratio: 8.325540e-02	ci left: 2.119886e-03	ci right 2.305016e-03	k: 2211	n:1000000
Cons ci ratio: 2.154269e-01	ci left: 2.953569e-04	ci right 3.675890e-04	k: 330	n:1000000
KS ci ratio: 2.776209e-03	ci left: 6.650436e-01	ci right 6.668934e-01	k: 665969	n:1000000
NOTCH1   1000000 perm   695 sec   (1438 perm/sec)   p_kst 6.659690e-01   p_cons 3.300000e-04   p_joint 2.211000e-03

Joint ci ratio: 8.367437e-02	ci left: 2.077568e-03	ci right 2.259959e-03	k: 2189	n:1010000
Cons ci ratio: 2.144573e-01	ci left: 2.952429e-04	ci right 3.670795e-04	k: 333	n:1010000
KS ci ratio: 2.762325e-03	ci left: 6.650653e-01	ci right 6.669060e-01	k: 672646	n:1010000
NOTCH1   1010000 perm   706 sec   (1431 perm/sec)   p_kst 6.659861e-01   p_cons 3.297030e-04   p_joint 2.167327e-03

Joint ci ratio: 8.325721e-02	ci left: 2.078318e-03	ci right 2.259821e-03	k: 2211	n:1020000
Cons ci ratio: 2.128697e-01	ci left: 2.969881e-04	ci right 3.686445e-04	k: 338	n:1020000
KS ci ratio: 2.749174e-03	ci left: 6.650013e-01	ci right 6.668330e-01	k: 679236	n:1020000
NOTCH1   1020000 perm   717 sec   (1424 perm/sec)   p_kst 6.659176e-01   p_cons 3.313725e-04   p_joint 2.167647e-03

Joint ci ratio: 8.297662e-02	ci left: 2.072401e-03	ci right 2.252747e-03	k: 2226	n:1030000
Cons ci ratio: 2.119340e-01	ci left: 2.968624e-04	ci right 3.681327e-04	k: 341	n:1030000
KS ci ratio: 2.736125e-03	ci left: 6.649522e-01	ci right 6.667750e-01	k: 685840	n:1030000
NOTCH1   1030000 perm   728 sec   (1416 perm/sec)   p_kst 6.658641e-01   p_cons 3.310680e-04   p_joint 2.161165e-03

Joint ci ratio: 8.527206e-02	ci left: 1.941393e-03	ci right 2.115245e-03	k: 2108	n:1040000
Cons ci ratio: 2.107053e-01	ci left: 2.976506e-04	ci right 3.686424e-04	k: 345	n:1040000
KS ci ratio: 2.722660e-03	ci left: 6.650022e-01	ci right 6.668161e-01	k: 692546	n:1040000
NOTCH1   1040000 perm   738 sec   (1408 perm/sec)   p_kst 6.659096e-01   p_cons 3.317308e-04   p_joint 2.026923e-03

Joint ci ratio: 8.509116e-02	ci left: 1.931292e-03	ci right 2.103855e-03	k: 2117	n:1050000
Cons ci ratio: 2.100991e-01	ci left: 2.966202e-04	ci right 3.671365e-04	k: 347	n:1050000
KS ci ratio: 2.709682e-03	ci left: 6.650036e-01	ci right 6.668089e-01	k: 699202	n:1050000
NOTCH1   1050000 perm   750 sec   (1400 perm/sec)   p_kst 6.659067e-01   p_cons 3.304762e-04   p_joint 2.016190e-03

Joint ci ratio: 8.463276e-02	ci left: 1.934310e-03	ci right 2.106165e-03	k: 2140	n:1060000
Cons ci ratio: 2.094981e-01	ci left: 2.956096e-04	ci right 3.656588e-04	k: 349	n:1060000
KS ci ratio: 2.696934e-03	ci left: 6.649974e-01	ci right 6.667942e-01	k: 705850	n:1060000
NOTCH1   1060000 perm   761 sec   (1393 perm/sec)   p_kst 6.658962e-01   p_cons 3.292453e-04   p_joint 2.018868e-03

Joint ci ratio: 8.412328e-02	ci left: 1.940019e-03	ci right 2.111293e-03	k: 2166	n:1070000
Cons ci ratio: 2.080174e-01	ci left: 2.972755e-04	ci right 3.671582e-04	k: 354	n:1070000
KS ci ratio: 2.684155e-03	ci left: 6.650259e-01	ci right 6.668143e-01	k: 712535	n:1070000
NOTCH1   1070000 perm   772 sec   (1385 perm/sec)   p_kst 6.659206e-01   p_cons 3.308411e-04   p_joint 2.024299e-03

Joint ci ratio: 8.381459e-02	ci left: 1.936559e-03	ci right 2.106870e-03	k: 2182	n:1080000
Cons ci ratio: 2.074340e-01	ci left: 2.962785e-04	ci right 3.657066e-04	k: 356	n:1080000
KS ci ratio: 2.671289e-03	ci left: 6.650985e-01	ci right 6.668784e-01	k: 719268	n:1080000
NOTCH1   1080000 perm   783 sec   (1378 perm/sec)   p_kst 6.659889e-01   p_cons 3.296296e-04   p_joint 2.020370e-03

Joint ci ratio: 8.497380e-02	ci left: 1.865804e-03	ci right 2.032274e-03	k: 2123	n:1090000
Cons ci ratio: 2.068555e-01	ci left: 2.953000e-04	ci right 3.642815e-04	k: 358	n:1090000
KS ci ratio: 2.659050e-03	ci left: 6.650953e-01	ci right 6.668671e-01	k: 725920	n:1090000
NOTCH1   1090000 perm   795 sec   (1372 perm/sec)   p_kst 6.659817e-01   p_cons 3.284404e-04   p_joint 1.947706e-03

Joint ci ratio: 8.483461e-02	ci left: 1.855070e-03	ci right 2.020298e-03	k: 2130	n:1100000
Cons ci ratio: 2.054297e-01	ci left: 2.969263e-04	ci right 3.657495e-04	k: 363	n:1100000
KS ci ratio: 2.646643e-03	ci left: 6.651487e-01	ci right 6.669123e-01	k: 732634	n:1100000
NOTCH1   1100000 perm   806 sec   (1365 perm/sec)   p_kst 6.660309e-01   p_cons 3.300000e-04   p_joint 1.936364e-03

Joint ci ratio: 8.521683e-02	ci left: 1.821603e-03	ci right 1.984617e-03	k: 2111	n:1110000
Cons ci ratio: 2.048678e-01	ci left: 2.959605e-04	ci right 3.643488e-04	k: 365	n:1110000
KS ci ratio: 2.634947e-03	ci left: 6.651100e-01	ci right 6.668657e-01	k: 739247	n:1110000
NOTCH1   1110000 perm   817 sec   (1358 perm/sec)   p_kst 6.659883e-01   p_cons 3.288288e-04   p_joint 1.901802e-03

Joint ci ratio: 8.507641e-02	ci left: 1.811455e-03	ci right 1.973281e-03	k: 2118	n:1120000
Cons ci ratio: 2.048681e-01	ci left: 2.933180e-04	ci right 3.610957e-04	k: 365	n:1120000
KS ci ratio: 2.623209e-03	ci left: 6.651051e-01	ci right 6.668530e-01	k: 745897	n:1120000
NOTCH1   1120000 perm   829 sec   (1351 perm/sec)   p_kst 6.659795e-01   p_cons 3.258929e-04   p_joint 1.891071e-03

Joint ci ratio: 8.465788e-02	ci left: 1.813614e-03	ci right 1.974797e-03	k: 2139	n:1130000
Cons ci ratio: 2.040336e-01	ci left: 2.932412e-04	ci right 3.606908e-04	k: 368	n:1130000
KS ci ratio: 2.611409e-03	ci left: 6.651375e-01	ci right 6.668776e-01	k: 752589	n:1130000
NOTCH1   1130000 perm   841 sec   (1344 perm/sec)   p_kst 6.660080e-01   p_cons 3.256637e-04   p_joint 1.892920e-03

Joint ci ratio: 8.434327e-02	ci left: 1.811444e-03	ci right 1.971805e-03	k: 2155	n:1140000
Cons ci ratio: 2.032093e-01	ci left: 2.931663e-04	ci right 3.602924e-04	k: 371	n:1140000
KS ci ratio: 2.599869e-03	ci left: 6.651518e-01	ci right 6.668842e-01	k: 759261	n:1140000
NOTCH1   1140000 perm   853 sec   (1337 perm/sec)   p_kst 6.660184e-01   p_cons 3.254386e-04   p_joint 1.890351e-03

Joint ci ratio: 8.397406e-02	ci left: 1.811866e-03	ci right 1.971529e-03	k: 2174	n:1150000
Cons ci ratio: 2.023948e-01	ci left: 2.930932e-04	ci right 3.599004e-04	k: 374	n:1150000
KS ci ratio: 2.588446e-03	ci left: 6.651719e-01	ci right 6.668968e-01	k: 765940	n:1150000
NOTCH1   1150000 perm   864 sec   (1330 perm/sec)   p_kst 6.660348e-01   p_cons 3.252174e-04   p_joint 1.890435e-03

Joint ci ratio: 8.428592e-02	ci left: 1.782743e-03	ci right 1.940451e-03	k: 2158	n:1160000
Cons ci ratio: 2.005315e-01	ci left: 2.962967e-04	ci right 3.631362e-04	k: 381	n:1160000
KS ci ratio: 2.577671e-03	ci left: 6.651055e-01	ci right 6.668230e-01	k: 772519	n:1160000
NOTCH1   1160000 perm   876 sec   (1324 perm/sec)   p_kst 6.659647e-01   p_cons 3.284483e-04   p_joint 1.860345e-03

Joint ci ratio: 8.420848e-02	ci left: 1.770852e-03	ci right 1.927357e-03	k: 2162	n:1170000
Cons ci ratio: 1.997487e-01	ci left: 2.961999e-04	ci right 3.627249e-04	k: 384	n:1170000
KS ci ratio: 2.566644e-03	ci left: 6.651069e-01	ci right 6.668170e-01	k: 779176	n:1170000
NOTCH1   1170000 perm   888 sec   (1317 perm/sec)   p_kst 6.659624e-01   p_cons 3.282051e-04   p_joint 1.847863e-03

Joint ci ratio: 8.444413e-02	ci left: 1.745889e-03	ci right 1.900641e-03	k: 2150	n:1180000
Cons ci ratio: 1.972035e-01	ci left: 3.017433e-04	ci right 3.685460e-04	k: 394	n:1180000
KS ci ratio: 2.555598e-03	ci left: 6.651363e-01	ci right 6.668391e-01	k: 785866	n:1180000
NOTCH1   1180000 perm   900 sec   (1311 perm/sec)   p_kst 6.659881e-01   p_cons 3.338983e-04   p_joint 1.822034e-03

Joint ci ratio: 8.430746e-02	ci left: 1.736975e-03	ci right 1.890676e-03	k: 2157	n:1190000
Cons ci ratio: 1.964589e-01	ci left: 3.016044e-04	ci right 3.680941e-04	k: 397	n:1190000
KS ci ratio: 2.544664e-03	ci left: 6.651703e-01	ci right 6.668659e-01	k: 792562	n:1190000
NOTCH1   1190000 perm   912 sec   (1305 perm/sec)   p_kst 6.660185e-01   p_cons 3.336134e-04   p_joint 1.812605e-03

Joint ci ratio: 8.569161e-02	ci left: 1.666220e-03	ci right 1.816201e-03	k: 2088	n:1200000
Cons ci ratio: 1.954790e-01	ci left: 3.022608e-04	ci right 3.685233e-04	k: 401	n:1200000
KS ci ratio: 2.534339e-03	ci left: 6.651211e-01	ci right 6.668097e-01	k: 799159	n:1200000
NOTCH1   1200000 perm   924 sec   (1299 perm/sec)   p_kst 6.659658e-01   p_cons 3.341667e-04   p_joint 1.740000e-03

Joint ci ratio: 8.552834e-02	ci left: 1.658919e-03	ci right 1.807945e-03	k: 2096	n:1210000
Cons ci ratio: 1.945136e-01	ci left: 3.029072e-04	ci right 3.689446e-04	k: 405	n:1210000
KS ci ratio: 2.523754e-03	ci left: 6.651406e-01	ci right 6.668222e-01	k: 805838	n:1210000
NOTCH1   1210000 perm   936 sec   (1293 perm/sec)   p_kst 6.659818e-01   p_cons 3.347107e-04   p_joint 1.732231e-03

Joint ci ratio: 8.516358e-02	ci left: 1.659761e-03	ci right 1.808194e-03	k: 2114	n:1220000
Cons ci ratio: 1.940364e-01	ci left: 3.019839e-04	ci right 3.676395e-04	k: 407	n:1220000
KS ci ratio: 2.513347e-03	ci left: 6.651516e-01	ci right 6.668263e-01	k: 812507	n:1220000
NOTCH1   1220000 perm   948 sec   (1287 perm/sec)   p_kst 6.659893e-01   p_cons 3.336066e-04   p_joint 1.732787e-03

Joint ci ratio: 8.476366e-02	ci left: 1.662182e-03	ci right 1.810099e-03	k: 2134	n:1230000
Cons ci ratio: 1.928581e-01	ci left: 3.033970e-04	ci right 3.689122e-04	k: 412	n:1230000
KS ci ratio: 2.503726e-03	ci left: 6.650453e-01	ci right 6.667133e-01	k: 819032	n:1230000
NOTCH1   1230000 perm   960 sec   (1281 perm/sec)   p_kst 6.658797e-01   p_cons 3.349593e-04   p_joint 1.734959e-03

Joint ci ratio: 8.433013e-02	ci left: 1.666144e-03	ci right 1.813618e-03	k: 2156	n:1240000
Cons ci ratio: 1.923930e-01	ci left: 3.024853e-04	ci right 3.676277e-04	k: 414	n:1240000
KS ci ratio: 2.493582e-03	ci left: 6.650537e-01	ci right 6.667149e-01	k: 825697	n:1240000
NOTCH1   1240000 perm   972 sec   (1276 perm/sec)   p_kst 6.658847e-01   p_cons 3.338710e-04   p_joint 1.738710e-03

Joint ci ratio: 8.524615e-02	ci left: 1.616793e-03	ci right 1.761531e-03	k: 2110	n:1250000
Cons ci ratio: 1.919311e-01	ci left: 3.015885e-04	ci right 3.663636e-04	k: 416	n:1250000
KS ci ratio: 2.483578e-03	ci left: 6.650587e-01	ci right 6.667133e-01	k: 832358	n:1250000
NOTCH1   1250000 perm   984 sec   (1270 perm/sec)   p_kst 6.658864e-01   p_cons 3.328000e-04   p_joint 1.688000e-03

Joint ci ratio: 8.516593e-02	ci left: 1.607068e-03	ci right 1.750793e-03	k: 2114	n:1260000
Cons ci ratio: 1.907906e-01	ci left: 3.029731e-04	ci right 3.676140e-04	k: 421	n:1260000
KS ci ratio: 2.473746e-03	ci left: 6.650542e-01	ci right 6.667022e-01	k: 839007	n:1260000
NOTCH1   1260000 perm   997 sec   (1264 perm/sec)   p_kst 6.658786e-01   p_cons 3.341270e-04   p_joint 1.677778e-03

Joint ci ratio: 8.492551e-02	ci left: 1.603662e-03	ci right 1.746658e-03	k: 2126	n:1270000
Cons ci ratio: 1.898927e-01	ci left: 3.035870e-04	ci right 3.680189e-04	k: 425	n:1270000
KS ci ratio: 2.463756e-03	ci left: 6.650994e-01	ci right 6.667408e-01	k: 845719	n:1270000
NOTCH1   1270000 perm   1010 sec   (1258 perm/sec)   p_kst 6.659205e-01   p_cons 3.346457e-04   p_joint 1.674016e-03

Joint ci ratio: 8.460791e-02	ci left: 1.603368e-03	ci right 1.745777e-03	k: 2142	n:1280000
Cons ci ratio: 1.894486e-01	ci left: 3.027035e-04	ci right 3.667804e-04	k: 427	n:1280000
KS ci ratio: 2.454273e-03	ci left: 6.650735e-01	ci right 6.667085e-01	k: 852341	n:1280000
NOTCH1   1280000 perm   1023 sec   (1251 perm/sec)   p_kst 6.658914e-01   p_cons 3.335938e-04   p_joint 1.673438e-03

Joint ci ratio: 8.470750e-02	ci left: 1.587145e-03	ci right 1.728286e-03	k: 2137	n:1290000
Cons ci ratio: 1.890076e-01	ci left: 3.018339e-04	ci right 3.655609e-04	k: 429	n:1290000
KS ci ratio: 2.444742e-03	ci left: 6.650768e-01	ci right 6.667054e-01	k: 859000	n:1290000
NOTCH1   1290000 perm   1036 sec   (1245 perm/sec)   p_kst 6.658915e-01   p_cons 3.325581e-04   p_joint 1.656589e-03

Joint ci ratio: 8.435311e-02	ci left: 1.588489e-03	ci right 1.729130e-03	k: 2155	n:1300000
Cons ci ratio: 1.883517e-01	ci left: 3.017108e-04	ci right 3.651655e-04	k: 432	n:1300000
KS ci ratio: 2.435224e-03	ci left: 6.650977e-01	ci right 6.667200e-01	k: 865682	n:1300000
NOTCH1   1300000 perm   1048 sec   (1240 perm/sec)   p_kst 6.659092e-01   p_cons 3.323077e-04   p_joint 1.657692e-03

Joint ci ratio: 8.398378e-02	ci left: 1.590562e-03	ci right 1.730740e-03	k: 2174	n:1310000
Cons ci ratio: 1.877026e-01	ci left: 3.015899e-04	ci right 3.647757e-04	k: 435	n:1310000
KS ci ratio: 2.425749e-03	ci left: 6.651305e-01	ci right 6.667466e-01	k: 872380	n:1310000
NOTCH1   1310000 perm   1061 sec   (1234 perm/sec)   p_kst 6.659389e-01   p_cons 3.320611e-04   p_joint 1.659542e-03

Joint ci ratio: 8.383003e-02	ci left: 1.584446e-03	ci right 1.723816e-03	k: 2182	n:1320000
Cons ci ratio: 1.872737e-01	ci left: 3.007492e-04	ci right 3.635985e-04	k: 437	n:1320000
KS ci ratio: 2.416574e-03	ci left: 6.651280e-01	ci right 6.667380e-01	k: 879032	n:1320000
NOTCH1   1320000 perm   1074 sec   (1229 perm/sec)   p_kst 6.659333e-01   p_cons 3.310606e-04   p_joint 1.653030e-03

Joint ci ratio: 8.352452e-02	ci left: 1.584311e-03	ci right 1.723137e-03	k: 2198	n:1330000
Cons ci ratio: 1.864243e-01	ci left: 3.013548e-04	ci right 3.640127e-04	k: 441	n:1330000
KS ci ratio: 2.407571e-03	ci left: 6.651127e-01	ci right 6.667167e-01	k: 885667	n:1330000
NOTCH1   1330000 perm   1087 sec   (1223 perm/sec)   p_kst 6.659150e-01   p_cons 3.315789e-04   p_joint 1.652632e-03

Joint ci ratio: 8.341113e-02	ci left: 1.576872e-03	ci right 1.714849e-03	k: 2204	n:1340000
Cons ci ratio: 1.857949e-01	ci left: 3.012404e-04	ci right 3.636392e-04	k: 444	n:1340000
KS ci ratio: 2.398575e-03	ci left: 6.651148e-01	ci right 6.667128e-01	k: 892325	n:1340000
NOTCH1   1340000 perm   1100 sec   (1218 perm/sec)   p_kst 6.659142e-01   p_cons 3.313433e-04   p_joint 1.644776e-03

Joint ci ratio: 8.482993e-02	ci left: 1.512252e-03	ci right 1.646938e-03	k: 2131	n:1350000
Cons ci ratio: 1.849654e-01	ci left: 3.018344e-04	ci right 3.640458e-04	k: 448	n:1350000
KS ci ratio: 2.389568e-03	ci left: 6.651377e-01	ci right 6.667297e-01	k: 899011	n:1350000
NOTCH1   1350000 perm   1114 sec   (1212 perm/sec)   p_kst 6.659341e-01   p_cons 3.318519e-04   p_joint 1.578519e-03

Joint ci ratio: 8.445434e-02	ci left: 1.514808e-03	ci right 1.649094e-03	k: 2150	n:1360000
Cons ci ratio: 1.843506e-01	ci left: 3.017190e-04	ci right 3.636768e-04	k: 451	n:1360000
KS ci ratio: 2.380717e-03	ci left: 6.651500e-01	ci right 6.667361e-01	k: 905683	n:1360000
NOTCH1   1360000 perm   1127 sec   (1207 perm/sec)   p_kst 6.659434e-01   p_cons 3.316176e-04   p_joint 1.580882e-03

Joint ci ratio: 8.443518e-02	ci left: 1.504465e-03	ci right 1.637802e-03	k: 2151	n:1370000
Cons ci ratio: 1.841471e-01	ci left: 3.002129e-04	ci right 3.617858e-04	k: 452	n:1370000
KS ci ratio: 2.372403e-03	ci left: 6.650795e-01	ci right 6.666599e-01	k: 912242	n:1370000
NOTCH1   1370000 perm   1141 sec   (1201 perm/sec)   p_kst 6.658701e-01   p_cons 3.299270e-04   p_joint 1.570073e-03

Joint ci ratio: 8.416191e-02	ci left: 1.503494e-03	ci right 1.636293e-03	k: 2165	n:1380000
Cons ci ratio: 1.837421e-01	ci left: 2.994200e-04	ci right 3.606801e-04	k: 454	n:1380000
KS ci ratio: 2.363968e-03	ci left: 6.650493e-01	ci right 6.666240e-01	k: 918855	n:1380000
NOTCH1   1380000 perm   1154 sec   (1196 perm/sec)   p_kst 6.658370e-01   p_cons 3.289855e-04   p_joint 1.568841e-03

Joint ci ratio: 8.457401e-02	ci left: 1.477887e-03	ci right 1.609096e-03	k: 2144	n:1390000
Cons ci ratio: 1.831393e-01	ci left: 2.993250e-04	ci right 3.603425e-04	k: 457	n:1390000
KS ci ratio: 2.355309e-03	ci left: 6.650785e-01	ci right 6.666475e-01	k: 925550	n:1390000
NOTCH1   1390000 perm   1167 sec   (1191 perm/sec)   p_kst 6.658633e-01   p_cons 3.287770e-04   p_joint 1.542446e-03

Joint ci ratio: 8.431896e-02	ci left: 1.476421e-03	ci right 1.607084e-03	k: 2157	n:1400000
Cons ci ratio: 1.825425e-01	ci left: 2.992318e-04	ci right 3.600095e-04	k: 460	n:1400000
KS ci ratio: 2.346678e-03	ci left: 6.651201e-01	ci right 6.666835e-01	k: 932263	n:1400000
NOTCH1   1400000 perm   1181 sec   (1185 perm/sec)   p_kst 6.659021e-01   p_cons 3.285714e-04   p_joint 1.540714e-03

Joint ci ratio: 8.393079e-02	ci left: 1.479836e-03	ci right 1.610169e-03	k: 2177	n:1410000
Cons ci ratio: 1.817556e-01	ci left: 2.998171e-04	ci right 3.604223e-04	k: 464	n:1410000
KS ci ratio: 2.338431e-03	ci left: 6.651059e-01	ci right 6.666637e-01	k: 938898	n:1410000
NOTCH1   1410000 perm   1195 sec   (1180 perm/sec)   p_kst 6.658851e-01   p_cons 3.290780e-04   p_joint 1.543972e-03

Joint ci ratio: 8.469410e-02	ci left: 1.442527e-03	ci right 1.570787e-03	k: 2138	n:1420000
Cons ci ratio: 1.807861e-01	ci left: 3.010671e-04	ci right 3.615648e-04	k: 469	n:1420000
KS ci ratio: 2.330020e-03	ci left: 6.651397e-01	ci right 6.666920e-01	k: 945601	n:1420000
NOTCH1   1420000 perm   1209 sec   (1175 perm/sec)   p_kst 6.659162e-01   p_cons 3.302817e-04   p_joint 1.505634e-03

Joint ci ratio: 8.116097e-02	ci left: 1.562557e-03	ci right 1.695419e-03	k: 2328	n:1430000
Cons ci ratio: 1.796429e-01	ci left: 3.029683e-04	ci right 3.634212e-04	k: 475	n:1430000
KS ci ratio: 2.321859e-03	ci left: 6.651423e-01	ci right 6.666892e-01	k: 952260	n:1430000
NOTCH1   1430000 perm   1223 sec   (1170 perm/sec)   p_kst 6.659161e-01   p_cons 3.321678e-04   p_joint 1.627972e-03

Joint ci ratio: 8.090090e-02	ci left: 1.561911e-03	ci right 1.694273e-03	k: 2343	n:1440000
Cons ci ratio: 1.794547e-01	ci left: 3.015276e-04	ci right 3.616231e-04	k: 476	n:1440000
KS ci ratio: 2.314004e-03	ci left: 6.651025e-01	ci right 6.666440e-01	k: 958858	n:1440000
NOTCH1   1440000 perm   1237 sec   (1165 perm/sec)   p_kst 6.658736e-01   p_cons 3.305556e-04   p_joint 1.627083e-03

Joint ci ratio: 8.102262e-02	ci left: 1.546409e-03	ci right 1.677663e-03	k: 2336	n:1450000
Cons ci ratio: 1.788930e-01	ci left: 3.014242e-04	ci right 3.612908e-04	k: 479	n:1450000
KS ci ratio: 2.305760e-03	ci left: 6.651537e-01	ci right 6.666898e-01	k: 965587	n:1450000
NOTCH1   1450000 perm   1250 sec   (1160 perm/sec)   p_kst 6.659221e-01   p_cons 3.303448e-04   p_joint 1.611034e-03

Joint ci ratio: 8.076388e-02	ci left: 1.545883e-03	ci right 1.676654e-03	k: 2351	n:1460000
Cons ci ratio: 1.779684e-01	ci left: 3.026314e-04	ci right 3.623937e-04	k: 484	n:1460000
KS ci ratio: 2.297790e-03	ci left: 6.651678e-01	ci right 6.666986e-01	k: 972263	n:1460000
NOTCH1   1460000 perm   1265 sec   (1154 perm/sec)   p_kst 6.659336e-01   p_cons 3.315068e-04   p_joint 1.610274e-03

Joint ci ratio: 7.887235e-02	ci left: 1.611373e-03	ci right 1.744345e-03	k: 2465	n:1470000
Cons ci ratio: 1.768775e-01	ci left: 3.044731e-04	ci right 3.641911e-04	k: 490	n:1470000
KS ci ratio: 2.289812e-03	ci left: 6.651995e-01	ci right 6.667250e-01	k: 978965	n:1470000
NOTCH1   1470000 perm   1279 sec   (1150 perm/sec)   p_kst 6.659626e-01   p_cons 3.333333e-04   p_joint 1.676871e-03

Joint ci ratio: 7.871310e-02	ci left: 1.607108e-03	ci right 1.739449e-03	k: 2475	n:1480000
Cons ci ratio: 1.766978e-01	ci left: 3.030616e-04	ci right 3.624359e-04	k: 491	n:1480000
KS ci ratio: 2.282180e-03	ci left: 6.651793e-01	ci right 6.666998e-01	k: 985591	n:1480000
NOTCH1   1480000 perm   1293 sec   (1144 perm/sec)   p_kst 6.659399e-01   p_cons 3.317568e-04   p_joint 1.672297e-03

Joint ci ratio: 7.839702e-02	ci left: 1.609482e-03	ci right 1.741461e-03	k: 2495	n:1490000
Cons ci ratio: 1.754539e-01	ci left: 3.055186e-04	ci right 3.649082e-04	k: 498	n:1490000
KS ci ratio: 2.274458e-03	ci left: 6.651917e-01	ci right 6.667070e-01	k: 992265	n:1490000
NOTCH1   1490000 perm   1308 sec   (1140 perm/sec)   p_kst 6.659497e-01   p_cons 3.342282e-04   p_joint 1.674497e-03

Joint ci ratio: 7.838174e-02	ci left: 1.599405e-03	ci right 1.730531e-03	k: 2496	n:1500000
Cons ci ratio: 1.751034e-01	ci left: 3.047566e-04	ci right 3.638673e-04	k: 500	n:1500000
KS ci ratio: 2.266954e-03	ci left: 6.651765e-01	ci right 6.666868e-01	k: 998898	n:1500000
NOTCH1   1500000 perm   1322 sec   (1135 perm/sec)   p_kst 6.659320e-01   p_cons 3.333333e-04   p_joint 1.664000e-03

Joint ci ratio: 7.844513e-02	ci left: 1.586215e-03	ci right 1.716370e-03	k: 2492	n:1510000
Cons ci ratio: 1.742360e-01	ci left: 3.059049e-04	ci right 3.649134e-04	k: 505	n:1510000
KS ci ratio: 2.259524e-03	ci left: 6.651616e-01	ci right 6.666669e-01	k: 1005531	n:1510000
NOTCH1   1510000 perm   1337 sec   (1130 perm/sec)   p_kst 6.659146e-01   p_cons 3.344371e-04   p_joint 1.650331e-03

Joint ci ratio: 7.822585e-02	ci left: 1.584810e-03	ci right 1.714469e-03	k: 2506	n:1520000
Cons ci ratio: 1.737218e-01	ci left: 3.057801e-04	ci right 3.645722e-04	k: 508	n:1520000
KS ci ratio: 2.251829e-03	ci left: 6.652134e-01	ci right 6.667136e-01	k: 1012265	n:1520000
NOTCH1   1520000 perm   1351 sec   (1125 perm/sec)   p_kst 6.659638e-01   p_cons 3.342105e-04   p_joint 1.648684e-03

Joint ci ratio: 7.811711e-02	ci left: 1.578937e-03	ci right 1.707928e-03	k: 2513	n:1530000
Cons ci ratio: 1.728747e-01	ci left: 3.069078e-04	ci right 3.655990e-04	k: 513	n:1530000
KS ci ratio: 2.244457e-03	ci left: 6.652161e-01	ci right 6.667114e-01	k: 1018925	n:1530000
NOTCH1   1530000 perm   1366 sec   (1120 perm/sec)   p_kst 6.659641e-01   p_cons 3.352941e-04   p_joint 1.642484e-03

Joint ci ratio: 7.814867e-02	ci left: 1.567411e-03	ci right 1.695514e-03	k: 2511	n:1540000
Cons ci ratio: 1.725394e-01	ci left: 3.061574e-04	ci right 3.645797e-04	k: 515	n:1540000
KS ci ratio: 2.237242e-03	ci left: 6.652018e-01	ci right 6.666923e-01	k: 1025559	n:1540000
NOTCH1   1540000 perm   1381 sec   (1115 perm/sec)   p_kst 6.659474e-01   p_cons 3.344156e-04   p_joint 1.630519e-03

Joint ci ratio: 7.827403e-02	ci left: 1.552238e-03	ci right 1.679314e-03	k: 2503	n:1550000
Cons ci ratio: 1.717094e-01	ci left: 3.072691e-04	ci right 3.655922e-04	k: 520	n:1550000
KS ci ratio: 2.230067e-03	ci left: 6.651936e-01	ci right 6.666793e-01	k: 1032202	n:1550000
NOTCH1   1550000 perm   1395 sec   (1111 perm/sec)   p_kst 6.659368e-01   p_cons 3.354839e-04   p_joint 1.614839e-03

Joint ci ratio: 7.827443e-02	ci left: 1.542287e-03	ci right 1.668549e-03	k: 2503	n:1560000
Cons ci ratio: 1.715450e-01	ci left: 3.059129e-04	ci right 3.639173e-04	k: 521	n:1560000
KS ci ratio: 2.222998e-03	ci left: 6.651778e-01	ci right 6.666588e-01	k: 1038833	n:1560000
NOTCH1   1560000 perm   1410 sec   (1106 perm/sec)   p_kst 6.659186e-01   p_cons 3.339744e-04   p_joint 1.604487e-03

Joint ci ratio: 7.843185e-02	ci left: 1.526218e-03	ci right 1.651428e-03	k: 2493	n:1570000
Cons ci ratio: 1.712174e-01	ci left: 3.051836e-04	ci right 3.629278e-04	k: 523	n:1570000
KS ci ratio: 2.215521e-03	ci left: 6.652578e-01	ci right 6.667339e-01	k: 1045614	n:1570000
NOTCH1   1570000 perm   1425 sec   (1102 perm/sec)   p_kst 6.659962e-01   p_cons 3.331210e-04   p_joint 1.587898e-03

Joint ci ratio: 7.816588e-02	ci left: 1.527108e-03	ci right 1.651946e-03	k: 2510	n:1580000
Cons ci ratio: 1.704062e-01	ci left: 3.062814e-04	ci right 3.639305e-04	k: 528	n:1580000
KS ci ratio: 2.208433e-03	ci left: 6.652735e-01	ci right 6.667449e-01	k: 1052295	n:1580000
NOTCH1   1580000 perm   1440 sec   (1097 perm/sec)   p_kst 6.660095e-01   p_cons 3.341772e-04   p_joint 1.588608e-03

Joint ci ratio: 7.868584e-02	ci left: 1.497155e-03	ci right 1.620396e-03	k: 2477	n:1590000
Cons ci ratio: 1.700850e-01	ci left: 3.055593e-04	ci right 3.629530e-04	k: 530	n:1590000
KS ci ratio: 2.201817e-03	ci left: 6.652071e-01	ci right 6.666740e-01	k: 1058846	n:1590000
NOTCH1   1590000 perm   1455 sec   (1092 perm/sec)   p_kst 6.659409e-01   p_cons 3.333333e-04   p_joint 1.557862e-03

Joint ci ratio: 7.923250e-02	ci left: 1.466966e-03	ci right 1.588600e-03	k: 2443	n:1600000
Cons ci ratio: 1.697657e-01	ci left: 3.048464e-04	ci right 3.619877e-04	k: 532	n:1600000
KS ci ratio: 2.194969e-03	ci left: 6.652004e-01	ci right 6.666627e-01	k: 1065491	n:1600000
NOTCH1   1600000 perm   1471 sec   (1088 perm/sec)   p_kst 6.659319e-01   p_cons 3.325000e-04   p_joint 1.526875e-03

Joint ci ratio: 7.916802e-02	ci left: 1.460290e-03	ci right 1.581267e-03	k: 2447	n:1610000
Cons ci ratio: 1.692900e-01	ci left: 3.047372e-04	ci right 3.616817e-04	k: 535	n:1610000
KS ci ratio: 2.188082e-03	ci left: 6.652149e-01	ci right 6.666727e-01	k: 1072170	n:1610000
NOTCH1   1610000 perm   1486 sec   (1083 perm/sec)   p_kst 6.659441e-01   p_cons 3.322981e-04   p_joint 1.519876e-03

Joint ci ratio: 7.412311e-02	ci left: 1.659562e-03	ci right 1.787909e-03	k: 2791	n:1620000
Cons ci ratio: 1.688182e-01	ci left: 3.046297e-04	ci right 3.613792e-04	k: 538	n:1620000
KS ci ratio: 2.181371e-03	ci left: 6.652064e-01	ci right 6.666597e-01	k: 1078812	n:1620000
NOTCH1   1620000 perm   1501 sec   (1079 perm/sec)   p_kst 6.659333e-01   p_cons 3.320988e-04   p_joint 1.722840e-03

Joint ci ratio: 7.477011e-02	ci left: 1.620479e-03	ci right 1.746946e-03	k: 2743	n:1630000
Cons ci ratio: 1.685059e-01	ci left: 3.039360e-04	ci right 3.604409e-04	k: 540	n:1630000
KS ci ratio: 2.174946e-03	ci left: 6.651520e-01	ci right 6.666008e-01	k: 1085379	n:1630000
NOTCH1   1630000 perm   1516 sec   (1075 perm/sec)   p_kst 6.658767e-01   p_cons 3.312883e-04   p_joint 1.682822e-03

Joint ci ratio: 7.448554e-02	ci left: 1.623165e-03	ci right 1.749337e-03	k: 2764	n:1640000
Cons ci ratio: 1.680407e-01	ci left: 3.038349e-04	ci right 3.601493e-04	k: 543	n:1640000
KS ci ratio: 2.168186e-03	ci left: 6.651787e-01	ci right 6.666231e-01	k: 1092078	n:1640000
NOTCH1   1640000 perm   1531 sec   (1071 perm/sec)   p_kst 6.659012e-01   p_cons 3.310976e-04   p_joint 1.685366e-03

Joint ci ratio: 7.451292e-02	ci left: 1.612137e-03	ci right 1.737501e-03	k: 2762	n:1650000
Cons ci ratio: 1.674262e-01	ci left: 3.043160e-04	ci right 3.604925e-04	k: 547	n:1650000
KS ci ratio: 2.161564e-03	ci left: 6.651894e-01	ci right 6.666294e-01	k: 1098751	n:1650000
NOTCH1   1650000 perm   1547 sec   (1067 perm/sec)   p_kst 6.659097e-01   p_cons 3.315152e-04   p_joint 1.673939e-03

Joint ci ratio: 7.429812e-02	ci left: 1.611885e-03	ci right 1.736852e-03	k: 2778	n:1660000
Cons ci ratio: 1.665170e-01	ci left: 3.059462e-04	ci right 3.620862e-04	k: 553	n:1660000
KS ci ratio: 2.154942e-03	ci left: 6.652126e-01	ci right 6.666482e-01	k: 1105445	n:1660000
NOTCH1   1660000 perm   1562 sec   (1063 perm/sec)   p_kst 6.659307e-01   p_cons 3.331325e-04   p_joint 1.673494e-03

Joint ci ratio: 7.411174e-02	ci left: 1.610460e-03	ci right 1.734990e-03	k: 2792	n:1670000
Cons ci ratio: 1.659191e-01	ci left: 3.064098e-04	ci right 3.624128e-04	k: 557	n:1670000
KS ci ratio: 2.148444e-03	ci left: 6.652224e-01	ci right 6.666537e-01	k: 1112117	n:1670000
NOTCH1   1670000 perm   1577 sec   (1059 perm/sec)   p_kst 6.659383e-01   p_cons 3.335329e-04   p_joint 1.671856e-03

Joint ci ratio: 7.395314e-02	ci left: 1.607885e-03	ci right 1.731938e-03	k: 2804	n:1680000
Cons ci ratio: 1.653275e-01	ci left: 3.068682e-04	ci right 3.627351e-04	k: 561	n:1680000
KS ci ratio: 2.142009e-03	ci left: 6.652308e-01	ci right 6.666579e-01	k: 1118787	n:1680000
NOTCH1   1680000 perm   1592 sec   (1055 perm/sec)   p_kst 6.659446e-01   p_cons 3.339286e-04   p_joint 1.669048e-03

Joint ci ratio: 6.913347e-02	ci left: 1.833159e-03	ci right 1.965007e-03	k: 3208	n:1690000
Cons ci ratio: 1.644519e-01	ci left: 3.084562e-04	ci right 3.642854e-04	k: 567	n:1690000
KS ci ratio: 2.135707e-03	ci left: 6.652238e-01	ci right 6.666466e-01	k: 1125431	n:1690000
NOTCH1   1690000 perm   1608 sec   (1051 perm/sec)   p_kst 6.659355e-01   p_cons 3.355030e-04   p_joint 1.898225e-03

Joint ci ratio: 6.909073e-02	ci left: 1.824688e-03	ci right 1.955842e-03	k: 3212	n:1700000
Cons ci ratio: 1.643074e-01	ci left: 3.072058e-04	ci right 3.627550e-04	k: 568	n:1700000
KS ci ratio: 2.129347e-03	ci left: 6.652404e-01	ci right 6.666590e-01	k: 1132115	n:1700000
NOTCH1   1700000 perm   1623 sec   (1047 perm/sec)   p_kst 6.659500e-01   p_cons 3.341176e-04   p_joint 1.889412e-03

Joint ci ratio: 6.888735e-02	ci left: 1.824937e-03	ci right 1.955707e-03	k: 3231	n:1710000
Cons ci ratio: 1.640195e-01	ci left: 3.065308e-04	ci right 3.618512e-04	k: 570	n:1710000
KS ci ratio: 2.123188e-03	ci left: 6.652264e-01	ci right 6.666409e-01	k: 1138747	n:1710000
NOTCH1   1710000 perm   1638 sec   (1044 perm/sec)   p_kst 6.659339e-01   p_cons 3.333333e-04   p_joint 1.889474e-03

Joint ci ratio: 6.870693e-02	ci left: 1.824040e-03	ci right 1.954390e-03	k: 3248	n:1720000
Cons ci ratio: 1.635903e-01	ci left: 3.064213e-04	ci right 3.615630e-04	k: 573	n:1720000
KS ci ratio: 2.117052e-03	ci left: 6.652190e-01	ci right 6.666293e-01	k: 1145390	n:1720000
NOTCH1   1720000 perm   1654 sec   (1040 perm/sec)   p_kst 6.659244e-01   p_cons 3.331395e-04   p_joint 1.888372e-03

Joint ci ratio: 6.846494e-02	ci left: 1.826564e-03	ci right 1.956616e-03	k: 3271	n:1730000
Cons ci ratio: 1.626016e-01	ci left: 3.085312e-04	ci right 3.636843e-04	k: 580	n:1730000
KS ci ratio: 2.110750e-03	ci left: 6.652579e-01	ci right 6.666641e-01	k: 1152113	n:1730000
NOTCH1   1730000 perm   1670 sec   (1036 perm/sec)   p_kst 6.659613e-01   p_cons 3.352601e-04   p_joint 1.890751e-03

Joint ci ratio: 6.899549e-02	ci left: 1.787823e-03	ci right 1.916143e-03	k: 3221	n:1740000
Cons ci ratio: 1.621835e-01	ci left: 3.084121e-04	ci right 3.633883e-04	k: 583	n:1740000
KS ci ratio: 2.104634e-03	ci left: 6.652688e-01	ci right 6.666709e-01	k: 1158788	n:1740000
NOTCH1   1740000 perm   1686 sec   (1032 perm/sec)   p_kst 6.659701e-01   p_cons 3.350575e-04   p_joint 1.851149e-03

Joint ci ratio: 6.911415e-02	ci left: 1.771429e-03	ci right 1.898800e-03	k: 3210	n:1750000
Cons ci ratio: 1.619065e-01	ci left: 3.077462e-04	ci right 3.625010e-04	k: 585	n:1750000
KS ci ratio: 2.098614e-03	ci left: 6.652704e-01	ci right 6.666685e-01	k: 1165447	n:1750000
NOTCH1   1750000 perm   1701 sec   (1029 perm/sec)   p_kst 6.659697e-01   p_cons 3.342857e-04   p_joint 1.834286e-03

Joint ci ratio: 4.874293e-02	ci left: 3.572105e-03	ci right 3.751126e-03	k: 6443	n:1760000
Cons ci ratio: 1.255701e-01	ci left: 5.186539e-04	ci right 5.886883e-04	k: 973	n:1760000
KS ci ratio: 2.092653e-03	ci left: 6.652702e-01	ci right 6.666644e-01	k: 1172103	n:1760000
NOTCH1   1760000 perm   1717 sec   (1025 perm/sec)   p_kst 6.659676e-01   p_cons 5.528409e-04   p_joint 3.660795e-03

Joint ci ratio: 4.852850e-02	ci left: 3.583735e-03	ci right 3.762527e-03	k: 6500	n:1770000
Cons ci ratio: 1.249303e-01	ci left: 5.211964e-04	ci right 5.911890e-04	k: 983	n:1770000
KS ci ratio: 2.086412e-03	ci left: 6.653408e-01	ci right 6.667310e-01	k: 1178884	n:1770000
NOTCH1   1770000 perm   1733 sec   (1021 perm/sec)   p_kst 6.660362e-01   p_cons 5.553672e-04   p_joint 3.672316e-03

Joint ci ratio: 4.842072e-02	ci left: 3.579697e-03	ci right 3.757879e-03	k: 6529	n:1780000
Cons ci ratio: 1.245511e-01	ci left: 5.215340e-04	ci right 5.913436e-04	k: 989	n:1780000
KS ci ratio: 2.080610e-03	ci left: 6.653285e-01	ci right 6.667148e-01	k: 1185519	n:1780000
NOTCH1   1780000 perm   1750 sec   (1017 perm/sec)   p_kst 6.660219e-01   p_cons 5.556180e-04   p_joint 3.667978e-03

Joint ci ratio: 4.844729e-02	ci left: 3.555834e-03	ci right 3.732929e-03	k: 6522	n:1790000
Cons ci ratio: 1.243629e-01	ci left: 5.202441e-04	ci right 5.897682e-04	k: 992	n:1790000
KS ci ratio: 2.074741e-03	ci left: 6.653409e-01	ci right 6.667233e-01	k: 1192198	n:1790000
NOTCH1   1790000 perm   1766 sec   (1014 perm/sec)   p_kst 6.660324e-01   p_cons 5.541899e-04   p_joint 3.643575e-03

Joint ci ratio: 4.810847e-02	ci left: 3.586575e-03	ci right 3.763917e-03	k: 6614	n:1800000
Cons ci ratio: 1.239268e-01	ci left: 5.211220e-04	ci right 5.905013e-04	k: 999	n:1800000
KS ci ratio: 2.068870e-03	ci left: 6.653644e-01	ci right 6.667429e-01	k: 1198897	n:1800000
NOTCH1   1800000 perm   1782 sec   (1010 perm/sec)   p_kst 6.660539e-01   p_cons 5.550000e-04   p_joint 3.674444e-03

Joint ci ratio: 4.796363e-02	ci left: 3.588594e-03	ci right 3.765486e-03	k: 6654	n:1810000
Cons ci ratio: 1.234953e-01	ci left: 5.219906e-04	ci right 5.912258e-04	k: 1006	n:1810000
KS ci ratio: 2.063210e-03	ci left: 6.653527e-01	ci right 6.667274e-01	k: 1205533	n:1810000
NOTCH1   1810000 perm   1798 sec   (1006 perm/sec)   p_kst 6.660403e-01   p_cons 5.558011e-04   p_joint 3.676243e-03

Joint ci ratio: 4.781651e-02	ci left: 3.591134e-03	ci right 3.767594e-03	k: 6695	n:1820000
Cons ci ratio: 1.230682e-01	ci left: 5.228501e-04	ci right 5.919420e-04	k: 1013	n:1820000
KS ci ratio: 2.057258e-03	ci left: 6.654143e-01	ci right 6.667852e-01	k: 1212302	n:1820000
NOTCH1   1820000 perm   1816 sec   (1002 perm/sec)   p_kst 6.661000e-01   p_cons 5.565934e-04   p_joint 3.678571e-03

Joint ci ratio: 4.768139e-02	ci left: 3.592027e-03	ci right 3.768019e-03	k: 6733	n:1830000
Cons ci ratio: 1.224657e-01	ci left: 5.252897e-04	ci right 5.943395e-04	k: 1023	n:1830000
KS ci ratio: 2.051841e-03	ci left: 6.653703e-01	ci right 6.667374e-01	k: 1218879	n:1830000
NOTCH1   1830000 perm   1833 sec   (999 perm/sec)   p_kst 6.660541e-01   p_cons 5.590164e-04   p_joint 3.679235e-03

Joint ci ratio: 4.775309e-02	ci left: 3.561764e-03	ci right 3.736543e-03	k: 6713	n:1840000
Cons ci ratio: 1.221085e-01	ci left: 5.255960e-04	ci right 5.944700e-04	k: 1029	n:1840000
KS ci ratio: 2.046391e-03	ci left: 6.653430e-01	ci right 6.667065e-01	k: 1225486	n:1840000
NOTCH1   1840000 perm   1850 sec   (995 perm/sec)   p_kst 6.660250e-01   p_cons 5.592391e-04   p_joint 3.648370e-03

Joint ci ratio: 4.760435e-02	ci left: 3.564944e-03	ci right 3.739318e-03	k: 6755	n:1850000
Cons ci ratio: 1.219902e-01	ci left: 5.238030e-04	ci right 5.923707e-04	k: 1031	n:1850000
KS ci ratio: 2.040965e-03	ci left: 6.653204e-01	ci right 6.666802e-01	k: 1232101	n:1850000
NOTCH1   1850000 perm   1867 sec   (991 perm/sec)   p_kst 6.660005e-01   p_cons 5.572973e-04   p_joint 3.651351e-03

Joint ci ratio: 4.749910e-02	ci left: 3.561715e-03	ci right 3.735535e-03	k: 6785	n:1860000
Cons ci ratio: 1.217545e-01	ci left: 5.230718e-04	ci right 5.914020e-04	k: 1035	n:1860000
KS ci ratio: 2.035464e-03	ci left: 6.653238e-01	ci right 6.666800e-01	k: 1238764	n:1860000
NOTCH1   1860000 perm   1884 sec   (987 perm/sec)   p_kst 6.660022e-01   p_cons 5.564516e-04   p_joint 3.647849e-03

Joint ci ratio: 4.700846e-02	ci left: 3.617709e-03	ci right 3.792390e-03	k: 6927	n:1870000
Cons ci ratio: 1.215787e-01	ci left: 5.218301e-04	ci right 5.898926e-04	k: 1038	n:1870000
KS ci ratio: 2.030012e-03	ci left: 6.653262e-01	ci right 6.666787e-01	k: 1245425	n:1870000
NOTCH1   1870000 perm   1901 sec   (984 perm/sec)   p_kst 6.660027e-01   p_cons 5.550802e-04   p_joint 3.704278e-03

Joint ci ratio: 4.596830e-02	ci left: 3.764604e-03	ci right 3.942249e-03	k: 7243	n:1880000
Cons ci ratio: 1.212292e-01	ci left: 5.221490e-04	ci right 5.900432e-04	k: 1044	n:1880000
KS ci ratio: 2.024335e-03	ci left: 6.653876e-01	ci right 6.667364e-01	k: 1252197	n:1880000
NOTCH1   1880000 perm   1918 sec   (980 perm/sec)   p_kst 6.660622e-01   p_cons 5.553191e-04   p_joint 3.852660e-03

Joint ci ratio: 4.584189e-02	ci left: 3.765607e-03	ci right 3.942797e-03	k: 7283	n:1890000
Cons ci ratio: 1.208251e-01	ci left: 5.229779e-04	ci right 5.907370e-04	k: 1051	n:1890000
KS ci ratio: 2.018962e-03	ci left: 6.653917e-01	ci right 6.667369e-01	k: 1258862	n:1890000
NOTCH1   1890000 perm   1935 sec   (977 perm/sec)   p_kst 6.660646e-01   p_cons 5.560847e-04   p_joint 3.853439e-03

Joint ci ratio: 4.630408e-02	ci left: 3.670867e-03	ci right 3.845388e-03	k: 7139	n:1900000
Cons ci ratio: 1.205961e-01	ci left: 5.222670e-04	ci right 5.897967e-04	k: 1055	n:1900000
KS ci ratio: 2.013793e-03	ci left: 6.653599e-01	ci right 6.667017e-01	k: 1265459	n:1900000
NOTCH1   1900000 perm   1952 sec   (973 perm/sec)   p_kst 6.660311e-01   p_cons 5.552632e-04   p_joint 3.757368e-03

Joint ci ratio: 4.621044e-02	ci left: 3.666655e-03	ci right 3.840614e-03	k: 7168	n:1910000
Cons ci ratio: 1.202549e-01	ci left: 5.225794e-04	ci right 5.899447e-04	k: 1061	n:1910000
KS ci ratio: 2.008437e-03	ci left: 6.653788e-01	ci right 6.667170e-01	k: 1272152	n:1910000
NOTCH1   1910000 perm   1969 sec   (970 perm/sec)   p_kst 6.660482e-01   p_cons 5.554974e-04   p_joint 3.752880e-03

Joint ci ratio: 4.520905e-02	ci left: 3.812327e-03	ci right 3.989175e-03	k: 7488	n:1920000
Cons ci ratio: 1.200292e-01	ci left: 5.218783e-04	ci right 5.890180e-04	k: 1065	n:1920000
KS ci ratio: 2.003316e-03	ci left: 6.653548e-01	ci right 6.666895e-01	k: 1278763	n:1920000
NOTCH1   1920000 perm   1987 sec   (966 perm/sec)   p_kst 6.660224e-01   p_cons 5.546875e-04   p_joint 3.900000e-03

Joint ci ratio: 4.542619e-02	ci left: 3.756200e-03	ci right 3.931304e-03	k: 7417	n:1930000
Cons ci ratio: 1.198607e-01	ci left: 5.206821e-04	ci right 5.875671e-04	k: 1068	n:1930000
KS ci ratio: 1.998148e-03	ci left: 6.653502e-01	ci right 6.666815e-01	k: 1285411	n:1930000
NOTCH1   1930000 perm   2004 sec   (963 perm/sec)   p_kst 6.660161e-01   p_cons 5.533679e-04   p_joint 3.843005e-03

Joint ci ratio: 4.564957e-02	ci left: 3.700145e-03	ci right 3.873506e-03	k: 7345	n:1940000
Cons ci ratio: 1.195814e-01	ci left: 5.204983e-04	ci right 5.871929e-04	k: 1073	n:1940000
KS ci ratio: 1.992863e-03	ci left: 6.653807e-01	ci right 6.667085e-01	k: 1292127	n:1940000
NOTCH1   1940000 perm   2021 sec   (960 perm/sec)   p_kst 6.660448e-01   p_cons 5.530928e-04   p_joint 3.786082e-03

Joint ci ratio: 4.554124e-02	ci left: 3.698914e-03	ci right 3.871795e-03	k: 7380	n:1950000
Cons ci ratio: 1.194148e-01	ci left: 5.193215e-04	ci right 5.857661e-04	k: 1076	n:1950000
KS ci ratio: 1.987843e-03	ci left: 6.653606e-01	ci right 6.666850e-01	k: 1298745	n:1950000
NOTCH1   1950000 perm   2039 sec   (957 perm/sec)   p_kst 6.660231e-01   p_cons 5.517949e-04   p_joint 3.784615e-03

Joint ci ratio: 4.566294e-02	ci left: 3.660369e-03	ci right 3.831918e-03	k: 7341	n:1960000
Cons ci ratio: 1.190835e-01	ci left: 5.196418e-04	ci right 5.859300e-04	k: 1082	n:1960000
KS ci ratio: 1.982616e-03	ci left: 6.653959e-01	ci right 6.667169e-01	k: 1305471	n:1960000
NOTCH1   1960000 perm   2056 sec   (953 perm/sec)   p_kst 6.660566e-01   p_cons 5.520408e-04   p_joint 3.745408e-03

Joint ci ratio: 4.555761e-02	ci left: 3.658851e-03	ci right 3.829923e-03	k: 7375	n:1970000
Cons ci ratio: 1.188643e-01	ci left: 5.189741e-04	ci right 5.850466e-04	k: 1086	n:1970000
KS ci ratio: 1.977464e-03	ci left: 6.654232e-01	ci right 6.667408e-01	k: 1312182	n:1970000
NOTCH1   1970000 perm   2074 sec   (950 perm/sec)   p_kst 6.660822e-01   p_cons 5.512690e-04   p_joint 3.743655e-03

Joint ci ratio: 4.546225e-02	ci left: 3.655850e-03	ci right 3.826414e-03	k: 7406	n:1980000
Cons ci ratio: 1.187007e-01	ci left: 5.178231e-04	ci right 5.836520e-04	k: 1089	n:1980000
KS ci ratio: 1.972437e-03	ci left: 6.654310e-01	ci right 6.667453e-01	k: 1318855	n:1980000
NOTCH1   1980000 perm   2092 sec   (946 perm/sec)   p_kst 6.660884e-01   p_cons 5.500000e-04   p_joint 3.740404e-03

Joint ci ratio: 4.532469e-02	ci left: 3.659836e-03	ci right 3.830056e-03	k: 7451	n:1990000
Cons ci ratio: 1.182674e-01	ci left: 5.191219e-04	ci right 5.848582e-04	k: 1097	n:1990000
KS ci ratio: 1.967366e-03	ci left: 6.654573e-01	ci right 6.667683e-01	k: 1325565	n:1990000
NOTCH1   1990000 perm   2109 sec   (943 perm/sec)   p_kst 6.661131e-01   p_cons 5.512563e-04   p_joint 3.744221e-03

Joint ci ratio: 4.520956e-02	ci left: 3.660321e-03	ci right 3.830120e-03	k: 7489	n:2000000
Cons ci ratio: 1.181062e-01	ci left: 5.179820e-04	ci right 5.834783e-04	k: 1100	n:2000000
KS ci ratio: 1.962461e-03	ci left: 6.654544e-01	ci right 6.667621e-01	k: 1332217	n:2000000
NOTCH1   2000000 perm   2127 sec   (940 perm/sec)   p_kst 6.661085e-01   p_cons 5.500000e-04   p_joint 3.744500e-03

Joint ci ratio: 4.508028e-02	ci left: 3.663263e-03	ci right 3.832700e-03	k: 7532	n:2010000
Cons ci ratio: 1.176794e-01	ci left: 5.192677e-04	ci right 5.846728e-04	k: 1108	n:2010000
KS ci ratio: 1.957598e-03	ci left: 6.654505e-01	ci right 6.667550e-01	k: 1338867	n:2010000
NOTCH1   2010000 perm   2145 sec   (937 perm/sec)   p_kst 6.661030e-01   p_cons 5.512438e-04   p_joint 3.747264e-03

Joint ci ratio: 4.496104e-02	ci left: 3.664707e-03	ci right 3.833751e-03	k: 7572	n:2020000
Cons ci ratio: 1.173623e-01	ci left: 5.195801e-04	ci right 5.848359e-04	k: 1114	n:2020000
KS ci ratio: 1.952544e-03	ci left: 6.654982e-01	ci right 6.667993e-01	k: 1345621	n:2020000
NOTCH1   2020000 perm   2162 sec   (934 perm/sec)   p_kst 6.661490e-01   p_cons 5.514851e-04   p_joint 3.748515e-03

Joint ci ratio: 4.552299e-02	ci left: 3.556547e-03	ci right 3.722706e-03	k: 7387	n:2030000
Cons ci ratio: 1.173098e-01	ci left: 5.174987e-04	ci right 5.824621e-04	k: 1115	n:2030000
KS ci ratio: 1.947760e-03	ci left: 6.654927e-01	ci right 6.667906e-01	k: 1352268	n:2030000
NOTCH1   2030000 perm   2180 sec   (931 perm/sec)   p_kst 6.661419e-01   p_cons 5.492611e-04   p_joint 3.638916e-03

Joint ci ratio: 4.544937e-02	ci left: 3.550744e-03	ci right 3.716356e-03	k: 7411	n:2040000
Cons ci ratio: 1.169957e-01	ci left: 5.178169e-04	ci right 5.826342e-04	k: 1121	n:2040000
KS ci ratio: 1.943022e-03	ci left: 6.654847e-01	ci right 6.667795e-01	k: 1358910	n:2040000
NOTCH1   2040000 perm   2198 sec   (928 perm/sec)   p_kst 6.661324e-01   p_cons 5.495098e-04   p_joint 3.632843e-03

Joint ci ratio: 4.533634e-02	ci left: 3.551267e-03	ci right 3.716481e-03	k: 7448	n:2050000
Cons ci ratio: 1.165808e-01	ci left: 5.190794e-04	ci right 5.838084e-04	k: 1129	n:2050000
KS ci ratio: 1.938282e-03	ci left: 6.654852e-01	ci right 6.667768e-01	k: 1365569	n:2050000
NOTCH1   2050000 perm   2216 sec   (925 perm/sec)   p_kst 6.661312e-01   p_cons 5.507317e-04   p_joint 3.633171e-03

Joint ci ratio: 4.519085e-02	ci left: 3.557066e-03	ci right 3.722005e-03	k: 7496	n:2060000
Cons ci ratio: 1.163237e-01	ci left: 5.189161e-04	ci right 5.834723e-04	k: 1134	n:2060000
KS ci ratio: 1.933642e-03	ci left: 6.654706e-01	ci right 6.667591e-01	k: 1372197	n:2060000
NOTCH1   2060000 perm   2235 sec   (922 perm/sec)   p_kst 6.661150e-01   p_cons 5.504854e-04   p_joint 3.638835e-03

Joint ci ratio: 4.508274e-02	ci left: 3.557077e-03	ci right 3.721611e-03	k: 7532	n:2070000
Cons ci ratio: 1.161193e-01	ci left: 5.182855e-04	ci right 5.826421e-04	k: 1138	n:2070000
KS ci ratio: 1.928861e-03	ci left: 6.654962e-01	ci right 6.667816e-01	k: 1378908	n:2070000
NOTCH1   2070000 perm   2253 sec   (919 perm/sec)   p_kst 6.661391e-01   p_cons 5.497585e-04   p_joint 3.638647e-03

Joint ci ratio: 4.498137e-02	ci left: 3.556137e-03	ci right 3.720249e-03	k: 7566	n:2080000
Cons ci ratio: 1.157641e-01	ci left: 5.190615e-04	ci right 5.833039e-04	k: 1145	n:2080000
KS ci ratio: 1.924289e-03	ci left: 6.654817e-01	ci right 6.667640e-01	k: 1385536	n:2080000
NOTCH1   2080000 perm   2272 sec   (916 perm/sec)   p_kst 6.661231e-01   p_cons 5.504808e-04   p_joint 3.637500e-03

Joint ci ratio: 4.386975e-02	ci left: 3.722240e-03	ci right 3.889666e-03	k: 7953	n:2090000
Cons ci ratio: 1.155627e-01	ci left: 5.184364e-04	ci right 5.824822e-04	k: 1149	n:2090000
KS ci ratio: 1.919622e-03	ci left: 6.654965e-01	ci right 6.667757e-01	k: 1392225	n:2090000
NOTCH1   2090000 perm   2290 sec   (913 perm/sec)   p_kst 6.661364e-01   p_cons 5.497608e-04   p_joint 3.805263e-03

Joint ci ratio: 4.375160e-02	ci left: 3.724767e-03	ci right 3.891844e-03	k: 7996	n:2100000
Cons ci ratio: 1.153123e-01	ci left: 5.182799e-04	ci right 5.821581e-04	k: 1154	n:2100000
KS ci ratio: 1.914953e-03	ci left: 6.655198e-01	ci right 6.667959e-01	k: 1398932	n:2100000
NOTCH1   2100000 perm   2309 sec   (910 perm/sec)   p_kst 6.661581e-01   p_cons 5.495238e-04   p_joint 3.807619e-03

Joint ci ratio: 4.363984e-02	ci left: 3.726333e-03	ci right 3.893042e-03	k: 8037	n:2110000
Cons ci ratio: 1.148655e-01	ci left: 5.199662e-04	ci right 5.837872e-04	k: 1163	n:2110000
KS ci ratio: 1.910366e-03	ci left: 6.655315e-01	ci right 6.668046e-01	k: 1405615	n:2110000
NOTCH1   2110000 perm   2328 sec   (906 perm/sec)   p_kst 6.661682e-01   p_cons 5.511848e-04   p_joint 3.809005e-03

Joint ci ratio: 4.368117e-02	ci left: 3.701757e-03	ci right 3.867527e-03	k: 8022	n:2120000
Cons ci ratio: 1.147178e-01	ci left: 5.188880e-04	ci right 5.824892e-04	k: 1166	n:2120000
KS ci ratio: 1.906026e-03	ci left: 6.654930e-01	ci right 6.667631e-01	k: 1412192	n:2120000
NOTCH1   2120000 perm   2347 sec   (903 perm/sec)   p_kst 6.661283e-01   p_cons 5.500000e-04   p_joint 3.783962e-03

Joint ci ratio: 4.356182e-02	ci left: 3.704810e-03	ci right 3.870252e-03	k: 8066	n:2130000
Cons ci ratio: 1.143266e-01	ci left: 5.201002e-04	ci right 5.836179e-04	k: 1174	n:2130000
KS ci ratio: 1.901609e-03	ci left: 6.654798e-01	ci right 6.667470e-01	k: 1418822	n:2130000
NOTCH1   2130000 perm   2366 sec   (900 perm/sec)   p_kst 6.661136e-01   p_cons 5.511737e-04   p_joint 3.786854e-03

Joint ci ratio: 4.344075e-02	ci left: 3.708297e-03	ci right 3.873424e-03	k: 8111	n:2140000
Cons ci ratio: 1.139393e-01	ci left: 5.213015e-04	ci right 5.847357e-04	k: 1182	n:2140000
KS ci ratio: 1.897185e-03	ci left: 6.654756e-01	ci right 6.667398e-01	k: 1425471	n:2140000
NOTCH1   2140000 perm   2385 sec   (897 perm/sec)   p_kst 6.661079e-01   p_cons 5.523364e-04   p_joint 3.790187e-03

Joint ci ratio: 4.369052e-02	ci left: 3.648723e-03	ci right 3.812154e-03	k: 8019	n:2150000
Cons ci ratio: 1.134606e-01	ci left: 5.233957e-04	ci right 5.867993e-04	k: 1192	n:2150000
KS ci ratio: 1.892693e-03	ci left: 6.654948e-01	ci right 6.667560e-01	k: 1432170	n:2150000
NOTCH1   2150000 perm   2404 sec   (895 perm/sec)   p_kst 6.661256e-01   p_cons 5.544186e-04   p_joint 3.729767e-03

Joint ci ratio: 4.358738e-02	ci left: 3.649231e-03	ci right 3.812289e-03	k: 8057	n:2160000
Cons ci ratio: 1.131764e-01	ci left: 5.236717e-04	ci right 5.869391e-04	k: 1198	n:2160000
KS ci ratio: 1.888492e-03	ci left: 6.654526e-01	ci right 6.667109e-01	k: 1438737	n:2160000
NOTCH1   2160000 perm   2423 sec   (892 perm/sec)   p_kst 6.660819e-01   p_cons 5.546296e-04   p_joint 3.730093e-03

Joint ci ratio: 4.350924e-02	ci left: 3.645633e-03	ci right 3.808231e-03	k: 8086	n:2170000
Cons ci ratio: 1.128943e-01	ci left: 5.239452e-04	ci right 5.870774e-04	k: 1204	n:2170000
KS ci ratio: 1.884046e-03	ci left: 6.654753e-01	ci right 6.667307e-01	k: 1445444	n:2170000
NOTCH1   2170000 perm   2442 sec   (889 perm/sec)   p_kst 6.661032e-01   p_cons 5.548387e-04   p_joint 3.726267e-03

Joint ci ratio: 4.342078e-02	ci left: 3.643883e-03	ci right 3.806064e-03	k: 8119	n:2180000
Cons ci ratio: 1.125677e-01	ci left: 5.246623e-04	ci right 5.876859e-04	k: 1211	n:2180000
KS ci ratio: 1.879754e-03	ci left: 6.654685e-01	ci right 6.667210e-01	k: 1452087	n:2180000
NOTCH1   2180000 perm   2462 sec   (886 perm/sec)   p_kst 6.660950e-01   p_cons 5.555046e-04   p_joint 3.724312e-03

Joint ci ratio: 4.332752e-02	ci left: 3.643052e-03	ci right 3.804840e-03	k: 8154	n:2190000
Cons ci ratio: 1.123363e-01	ci left: 5.244855e-04	ci right 5.873497e-04	k: 1216	n:2190000
KS ci ratio: 1.875523e-03	ci left: 6.654544e-01	ci right 6.667041e-01	k: 1458714	n:2190000
NOTCH1   2190000 perm   2481 sec   (883 perm/sec)   p_kst 6.660795e-01   p_cons 5.552511e-04   p_joint 3.723288e-03

Joint ci ratio: 4.325077e-02	ci left: 3.639532e-03	ci right 3.800870e-03	k: 8183	n:2200000
Cons ci ratio: 1.122442e-01	ci left: 5.229850e-04	ci right 5.856146e-04	k: 1218	n:2200000
KS ci ratio: 1.871211e-03	ci left: 6.654664e-01	ci right 6.667132e-01	k: 1465398	n:2200000
NOTCH1   2200000 perm   2501 sec   (880 perm/sec)   p_kst 6.660900e-01   p_cons 5.536364e-04   p_joint 3.719545e-03

Joint ci ratio: 4.316651e-02	ci left: 3.637387e-03	ci right 3.798307e-03	k: 8215	n:2210000
Cons ci ratio: 1.121064e-01	ci left: 5.219379e-04	ci right 5.843603e-04	k: 1221	n:2210000
KS ci ratio: 1.867058e-03	ci left: 6.654475e-01	ci right 6.666915e-01	k: 1472014	n:2210000
NOTCH1   2210000 perm   2520 sec   (877 perm/sec)   p_kst 6.660697e-01   p_cons 5.524887e-04   p_joint 3.717195e-03

Joint ci ratio: 4.306441e-02	ci left: 3.638380e-03	ci right 3.798955e-03	k: 8254	n:2220000
Cons ci ratio: 1.118321e-01	ci left: 5.222138e-04	ci right 5.845064e-04	k: 1227	n:2220000
KS ci ratio: 1.862780e-03	ci left: 6.654652e-01	ci right 6.667064e-01	k: 1478711	n:2220000
NOTCH1   2220000 perm   2539 sec   (874 perm/sec)   p_kst 6.660860e-01   p_cons 5.527027e-04   p_joint 3.718018e-03

Joint ci ratio: 4.298904e-02	ci left: 3.634929e-03	ci right 3.795064e-03	k: 8283	n:2230000
Cons ci ratio: 1.115599e-01	ci left: 5.224875e-04	ci right 5.846510e-04	k: 1233	n:2230000
KS ci ratio: 1.858589e-03	ci left: 6.654689e-01	ci right 6.667073e-01	k: 1485377	n:2230000
NOTCH1   2230000 perm   2559 sec   (872 perm/sec)   p_kst 6.660883e-01   p_cons 5.529148e-04   p_joint 3.714350e-03

Joint ci ratio: 4.285461e-02	ci left: 3.641667e-03	ci right 3.801584e-03	k: 8335	n:2240000
Cons ci ratio: 1.112897e-01	ci left: 5.227589e-04	ci right 5.847942e-04	k: 1239	n:2240000
KS ci ratio: 1.854421e-03	ci left: 6.654739e-01	ci right 6.667096e-01	k: 1492046	n:2240000
NOTCH1   2240000 perm   2578 sec   (869 perm/sec)   p_kst 6.660920e-01   p_cons 5.531250e-04   p_joint 3.720982e-03

Joint ci ratio: 4.275725e-02	ci left: 3.642190e-03	ci right 3.801758e-03	k: 8373	n:2250000
Cons ci ratio: 1.109768e-01	ci left: 5.234602e-04	ci right 5.853926e-04	k: 1246	n:2250000
KS ci ratio: 1.850393e-03	ci left: 6.654518e-01	ci right 6.666847e-01	k: 1498654	n:2250000
NOTCH1   2250000 perm   2598 sec   (866 perm/sec)   p_kst 6.660684e-01   p_cons 5.537778e-04   p_joint 3.721333e-03

Joint ci ratio: 4.265039e-02	ci left: 3.644460e-03	ci right 3.803719e-03	k: 8415	n:2260000
Cons ci ratio: 1.106666e-01	ci left: 5.241555e-04	ci right 5.859855e-04	k: 1253	n:2260000
KS ci ratio: 1.846325e-03	ci left: 6.654458e-01	ci right 6.666759e-01	k: 1505298	n:2260000
NOTCH1   2260000 perm   2617 sec   (864 perm/sec)   p_kst 6.660611e-01   p_cons 5.544248e-04   p_joint 3.723451e-03

Joint ci ratio: 4.275796e-02	ci left: 3.610099e-03	ci right 3.768264e-03	k: 8373	n:2270000
Cons ci ratio: 1.104028e-01	ci left: 5.244165e-04	ci right 5.861203e-04	k: 1259	n:2270000
KS ci ratio: 1.842177e-03	ci left: 6.654658e-01	ci right 6.666933e-01	k: 1512001	n:2270000
NOTCH1   2270000 perm   2637 sec   (861 perm/sec)   p_kst 6.660797e-01   p_cons 5.546256e-04   p_joint 3.688546e-03

Joint ci ratio: 4.267909e-02	ci left: 3.607716e-03	ci right 3.765478e-03	k: 8404	n:2280000
Cons ci ratio: 1.101409e-01	ci left: 5.246754e-04	ci right 5.862537e-04	k: 1265	n:2280000
KS ci ratio: 1.838130e-03	ci left: 6.654677e-01	ci right 6.666924e-01	k: 1518663	n:2280000
NOTCH1   2280000 perm   2657 sec   (858 perm/sec)   p_kst 6.660803e-01   p_cons 5.548246e-04   p_joint 3.685965e-03

Joint ci ratio: 4.257533e-02	ci left: 3.609675e-03	ci right 3.767130e-03	k: 8445	n:2290000
Cons ci ratio: 1.099240e-01	ci left: 5.245076e-04	ci right 5.859372e-04	k: 1270	n:2290000
KS ci ratio: 1.834029e-03	ci left: 6.654892e-01	ci right 6.667113e-01	k: 1525370	n:2290000
NOTCH1   2290000 perm   2677 sec   (856 perm/sec)   p_kst 6.661004e-01   p_cons 5.545852e-04   p_joint 3.687773e-03

Joint ci ratio: 4.247736e-02	ci left: 3.610757e-03	ci right 3.767888e-03	k: 8484	n:2300000
Cons ci ratio: 1.097085e-01	ci left: 5.243413e-04	ci right 5.856232e-04	k: 1275	n:2300000
KS ci ratio: 1.830029e-03	ci left: 6.654927e-01	ci right 6.667121e-01	k: 1532036	n:2300000
NOTCH1   2300000 perm   2696 sec   (853 perm/sec)   p_kst 6.661026e-01   p_cons 5.543478e-04   p_joint 3.688696e-03

Joint ci ratio: 4.236758e-02	ci left: 3.613972e-03	ci right 3.770826e-03	k: 8528	n:2310000
Cons ci ratio: 1.093235e-01	ci left: 5.258609e-04	ci right 5.870908e-04	k: 1284	n:2310000
KS ci ratio: 1.826094e-03	ci left: 6.654866e-01	ci right 6.667034e-01	k: 1538680	n:2310000
NOTCH1   2310000 perm   2716 sec   (851 perm/sec)   p_kst 6.660952e-01   p_cons 5.558442e-04   p_joint 3.691775e-03

Joint ci ratio: 4.224876e-02	ci left: 3.618866e-03	ci right 3.775481e-03	k: 8576	n:2320000
Cons ci ratio: 1.091538e-01	ci left: 5.252712e-04	ci right 5.863315e-04	k: 1288	n:2320000
KS ci ratio: 1.822157e-03	ci left: 6.654871e-01	ci right 6.667013e-01	k: 1545339	n:2320000
NOTCH1   2320000 perm   2736 sec   (848 perm/sec)   p_kst 6.660944e-01   p_cons 5.551724e-04   p_joint 3.696552e-03

Joint ci ratio: 4.223427e-02	ci left: 3.605881e-03	ci right 3.761880e-03	k: 8582	n:2330000
Cons ci ratio: 1.090271e-01	ci left: 5.242693e-04	ci right 5.851377e-04	k: 1291	n:2330000
KS ci ratio: 1.818441e-03	ci left: 6.654399e-01	ci right 6.666515e-01	k: 1551887	n:2330000
NOTCH1   2330000 perm   2756 sec   (846 perm/sec)   p_kst 6.660459e-01   p_cons 5.540773e-04   p_joint 3.683262e-03

Joint ci ratio: 4.211902e-02	ci left: 3.610346e-03	ci right 3.766100e-03	k: 8629	n:2340000
Cons ci ratio: 1.088587e-01	ci left: 5.236916e-04	ci right 5.843931e-04	k: 1295	n:2340000
KS ci ratio: 1.814584e-03	ci left: 6.654333e-01	ci right 6.666423e-01	k: 1558529	n:2340000
NOTCH1   2340000 perm   2776 sec   (843 perm/sec)   p_kst 6.660380e-01   p_cons 5.534188e-04   p_joint 3.687607e-03

Joint ci ratio: 4.304531e-02	ci left: 3.440889e-03	ci right 3.592679e-03	k: 8263	n:2350000
Cons ci ratio: 1.086493e-01	ci left: 5.235329e-04	ci right 5.840918e-04	k: 1300	n:2350000
KS ci ratio: 1.810560e-03	ci left: 6.654736e-01	ci right 6.666800e-01	k: 1565281	n:2350000
NOTCH1   2350000 perm   2796 sec   (841 perm/sec)   p_kst 6.660770e-01   p_cons 5.531915e-04   p_joint 3.516170e-03

Joint ci ratio: 4.296484e-02	ci left: 3.439303e-03	ci right 3.590732e-03	k: 8294	n:2360000
Cons ci ratio: 1.084827e-01	ci left: 5.229634e-04	ci right 5.833578e-04	k: 1304	n:2360000
KS ci ratio: 1.806663e-03	ci left: 6.654890e-01	ci right 6.666928e-01	k: 1571975	n:2360000
NOTCH1   2360000 perm   2816 sec   (838 perm/sec)   p_kst 6.660911e-01   p_cons 5.525424e-04   p_joint 3.514407e-03

Joint ci ratio: 4.285900e-02	ci left: 3.441906e-03	ci right 3.593067e-03	k: 8335	n:2370000
Cons ci ratio: 1.081517e-01	ci left: 5.240409e-04	ci right 5.843633e-04	k: 1312	n:2370000
KS ci ratio: 1.802898e-03	ci left: 6.654776e-01	ci right 6.666789e-01	k: 1578606	n:2370000
NOTCH1   2370000 perm   2836 sec   (836 perm/sec)   p_kst 6.660785e-01   p_cons 5.535865e-04   p_joint 3.516878e-03

Joint ci ratio: 4.277956e-02	ci left: 3.440330e-03	ci right 3.591134e-03	k: 8366	n:2380000
Cons ci ratio: 1.079464e-01	ci left: 5.238832e-04	ci right 5.840656e-04	k: 1317	n:2380000
KS ci ratio: 1.799088e-03	ci left: 6.654836e-01	ci right 6.666824e-01	k: 1585278	n:2380000
NOTCH1   2380000 perm   2856 sec   (833 perm/sec)   p_kst 6.660832e-01   p_cons 5.533613e-04   p_joint 3.515126e-03

Joint ci ratio: 4.285447e-02	ci left: 3.413930e-03	ci right 3.563846e-03	k: 8337	n:2390000
Cons ci ratio: 1.077830e-01	ci left: 5.233197e-04	ci right 5.833406e-04	k: 1321	n:2390000
KS ci ratio: 1.795321e-03	ci left: 6.654845e-01	ci right 6.666808e-01	k: 1591938	n:2390000
NOTCH1   2390000 perm   2877 sec   (831 perm/sec)   p_kst 6.660828e-01   p_cons 5.527197e-04   p_joint 3.488285e-03

Joint ci ratio: 4.277250e-02	ci left: 3.412896e-03	ci right 3.562473e-03	k: 8369	n:2400000
Cons ci ratio: 1.074583e-01	ci left: 5.243828e-04	ci right 5.843330e-04	k: 1329	n:2400000
KS ci ratio: 1.791458e-03	ci left: 6.655154e-01	ci right 6.667092e-01	k: 1598670	n:2400000
NOTCH1   2400000 perm   2898 sec   (828 perm/sec)   p_kst 6.661125e-01   p_cons 5.537500e-04   p_joint 3.487083e-03

Joint ci ratio: 4.323131e-02	ci left: 3.326487e-03	ci right 3.473880e-03	k: 8193	n:2410000
Cons ci ratio: 1.072971e-01	ci left: 5.238221e-04	ci right 5.836127e-04	k: 1333	n:2410000
KS ci ratio: 1.787756e-03	ci left: 6.655121e-01	ci right 6.667033e-01	k: 1605320	n:2410000
NOTCH1   2410000 perm   2919 sec   (826 perm/sec)   p_kst 6.661079e-01   p_cons 5.531120e-04   p_joint 3.399585e-03

Joint ci ratio: 4.244112e-02	ci left: 3.438247e-03	ci right 3.587739e-03	k: 8500	n:2420000
Cons ci ratio: 1.070566e-01	ci left: 5.240704e-04	ci right 5.837468e-04	k: 1339	n:2420000
KS ci ratio: 1.784009e-03	ci left: 6.655257e-01	ci right 6.667144e-01	k: 1612011	n:2420000
NOTCH1   2420000 perm   2940 sec   (823 perm/sec)   p_kst 6.661202e-01   p_cons 5.533058e-04   p_joint 3.512397e-03

Joint ci ratio: 4.237395e-02	ci left: 3.435091e-03	ci right 3.584203e-03	k: 8527	n:2430000
Cons ci ratio: 1.068972e-01	ci left: 5.235158e-04	ci right 5.830347e-04	k: 1343	n:2430000
KS ci ratio: 1.780306e-03	ci left: 6.655338e-01	ci right 6.667201e-01	k: 1618689	n:2430000
NOTCH1   2430000 perm   2961 sec   (821 perm/sec)   p_kst 6.661272e-01   p_cons 5.526749e-04   p_joint 3.509053e-03

Joint ci ratio: 4.230214e-02	ci left: 3.432772e-03	ci right 3.581525e-03	k: 8556	n:2440000
Cons ci ratio: 1.066989e-01	ci left: 5.233647e-04	ci right 5.827491e-04	k: 1348	n:2440000
KS ci ratio: 1.776675e-03	ci left: 6.655300e-01	ci right 6.667139e-01	k: 1625338	n:2440000
NOTCH1   2440000 perm   2981 sec   (818 perm/sec)   p_kst 6.661221e-01   p_cons 5.524590e-04   p_joint 3.506557e-03

Joint ci ratio: 4.102090e-02	ci left: 3.637285e-03	ci right 3.790014e-03	k: 9097	n:2450000
Cons ci ratio: 1.064231e-01	ci left: 5.240095e-04	ci right 5.833038e-04	k: 1355	n:2450000
KS ci ratio: 1.773010e-03	ci left: 6.655401e-01	ci right 6.667215e-01	k: 1632021	n:2450000
NOTCH1   2450000 perm   3002 sec   (816 perm/sec)   p_kst 6.661310e-01   p_cons 5.530612e-04   p_joint 3.713061e-03

Joint ci ratio: 4.106200e-02	ci left: 3.615256e-03	ci right 3.767217e-03	k: 9079	n:2460000
Cons ci ratio: 1.062274e-01	ci left: 5.238578e-04	ci right 5.830192e-04	k: 1360	n:2460000
KS ci ratio: 1.769335e-03	ci left: 6.655583e-01	ci right 6.667373e-01	k: 1638724	n:2460000
NOTCH1   2460000 perm   3022 sec   (814 perm/sec)   p_kst 6.661480e-01   p_cons 5.528455e-04   p_joint 3.690650e-03

Joint ci ratio: 4.097633e-02	ci left: 3.615847e-03	ci right 3.767507e-03	k: 9117	n:2470000
Cons ci ratio: 1.060329e-01	ci left: 5.237075e-04	ci right 5.827368e-04	k: 1365	n:2470000
KS ci ratio: 1.765477e-03	ci left: 6.656281e-01	ci right 6.668047e-01	k: 1645555	n:2470000
NOTCH1   2470000 perm   3043 sec   (812 perm/sec)   p_kst 6.662166e-01   p_cons 5.526316e-04   p_joint 3.691093e-03

Joint ci ratio: 4.090017e-02	ci left: 3.614836e-03	ci right 3.766165e-03	k: 9151	n:2480000
Cons ci ratio: 1.058780e-01	ci left: 5.231659e-04	ci right 5.820427e-04	k: 1369	n:2480000
KS ci ratio: 1.761927e-03	ci left: 6.656260e-01	ci right 6.668002e-01	k: 1652209	n:2480000
NOTCH1   2480000 perm   3064 sec   (809 perm/sec)   p_kst 6.662133e-01   p_cons 5.520161e-04   p_joint 3.689919e-03

Joint ci ratio: 4.167305e-02	ci left: 3.467163e-03	ci right 3.615119e-03	k: 8816	n:2490000
Cons ci ratio: 1.058395e-01	ci left: 5.214558e-04	ci right 5.801175e-04	k: 1370	n:2490000
KS ci ratio: 1.758308e-03	ci left: 6.656468e-01	ci right 6.668186e-01	k: 1658920	n:2490000
NOTCH1   2490000 perm   3085 sec   (807 perm/sec)   p_kst 6.662329e-01   p_cons 5.502008e-04   p_joint 3.540562e-03

Joint ci ratio: 4.159059e-02	ci left: 3.467149e-03	ci right 3.614805e-03	k: 8851	n:2500000
Cons ci ratio: 1.056086e-01	ci left: 5.217065e-04	ci right 5.802604e-04	k: 1376	n:2500000
KS ci ratio: 1.754837e-03	ci left: 6.656355e-01	ci right 6.668050e-01	k: 1665551	n:2500000
NOTCH1   2500000 perm   3106 sec   (805 perm/sec)   p_kst 6.662204e-01   p_cons 5.504000e-04   p_joint 3.540400e-03

Joint ci ratio: 4.149221e-02	ci left: 3.469895e-03	ci right 3.617310e-03	k: 8893	n:2510000
Cons ci ratio: 1.054556e-01	ci left: 5.211796e-04	ci right 5.795843e-04	k: 1380	n:2510000
KS ci ratio: 1.751467e-03	ci left: 6.656039e-01	ci right 6.667710e-01	k: 1672131	n:2510000
NOTCH1   2510000 perm   3128 sec   (802 perm/sec)   p_kst 6.661876e-01   p_cons 5.498008e-04   p_joint 3.543028e-03

Joint ci ratio: 4.141314e-02	ci left: 3.469478e-03	ci right 3.616587e-03	k: 8927	n:2520000
Cons ci ratio: 1.052652e-01	ci left: 5.210433e-04	ci right 5.793208e-04	k: 1385	n:2520000
KS ci ratio: 1.748112e-03	ci left: 6.655737e-01	ci right 6.667386e-01	k: 1678714	n:2520000
NOTCH1   2520000 perm   3150 sec   (800 perm/sec)   p_kst 6.661563e-01   p_cons 5.496032e-04   p_joint 3.542460e-03

Joint ci ratio: 4.133684e-02	ci left: 3.468673e-03	ci right 3.615471e-03	k: 8960	n:2530000
Cons ci ratio: 1.050004e-01	ci left: 5.216779e-04	ci right 5.798705e-04	k: 1392	n:2530000
KS ci ratio: 1.744815e-03	ci left: 6.655335e-01	ci right 6.666961e-01	k: 1685271	n:2530000
NOTCH1   2530000 perm   3171 sec   (798 perm/sec)   p_kst 6.661150e-01   p_cons 5.501976e-04   p_joint 3.541502e-03

Joint ci ratio: 4.123336e-02	ci left: 3.472551e-03	ci right 3.619136e-03	k: 9005	n:2540000
Cons ci ratio: 1.048875e-01	ci left: 5.207741e-04	ci right 5.787996e-04	k: 1395	n:2540000
KS ci ratio: 1.741319e-03	ci left: 6.655496e-01	ci right 6.667099e-01	k: 1691970	n:2540000
NOTCH1   2540000 perm   3192 sec   (796 perm/sec)   p_kst 6.661299e-01   p_cons 5.492126e-04   p_joint 3.545276e-03

Joint ci ratio: 4.115576e-02	ci left: 3.472129e-03	ci right 3.618414e-03	k: 9039	n:2550000
Cons ci ratio: 1.047751e-01	ci left: 5.198775e-04	ci right 5.777371e-04	k: 1398	n:2550000
KS ci ratio: 1.738009e-03	ci left: 6.655231e-01	ci right 6.666812e-01	k: 1698561	n:2550000
NOTCH1   2550000 perm   3214 sec   (793 perm/sec)   p_kst 6.661024e-01   p_cons 5.482353e-04   p_joint 3.544706e-03

Joint ci ratio: 4.106724e-02	ci left: 3.473644e-03	ci right 3.619670e-03	k: 9078	n:2560000
Cons ci ratio: 1.044767e-01	ci left: 5.208899e-04	ci right 5.786871e-04	k: 1406	n:2560000
KS ci ratio: 1.734704e-03	ci left: 6.655004e-01	ci right 6.666562e-01	k: 1705161	n:2560000
NOTCH1   2560000 perm   3236 sec   (791 perm/sec)   p_kst 6.660785e-01   p_cons 5.492188e-04   p_joint 3.546094e-03

Joint ci ratio: 4.106298e-02	ci left: 3.460897e-03	ci right 3.606373e-03	k: 9080	n:2570000
Cons ci ratio: 1.041073e-01	ci left: 5.226527e-04	ci right 5.804279e-04	k: 1416	n:2570000
KS ci ratio: 1.731242e-03	ci left: 6.655230e-01	ci right 6.666766e-01	k: 1711877	n:2570000
NOTCH1   2570000 perm   3257 sec   (789 perm/sec)   p_kst 6.661000e-01   p_cons 5.509728e-04   p_joint 3.533074e-03

Joint ci ratio: 4.098859e-02	ci left: 3.460142e-03	ci right 3.605317e-03	k: 9113	n:2580000
Cons ci ratio: 1.039607e-01	ci left: 5.221370e-04	ci right 5.797689e-04	k: 1420	n:2580000
KS ci ratio: 1.727935e-03	ci left: 6.655110e-01	ci right 6.666623e-01	k: 1718504	n:2580000
NOTCH1   2580000 perm   3279 sec   (787 perm/sec)   p_kst 6.660868e-01   p_cons 5.503876e-04   p_joint 3.532171e-03

Joint ci ratio: 4.132004e-02	ci left: 3.391372e-03	ci right 3.534838e-03	k: 8968	n:2590000
Cons ci ratio: 1.038877e-01	ci left: 5.208731e-04	ci right 5.783227e-04	k: 1422	n:2590000
KS ci ratio: 1.724636e-03	ci left: 6.655017e-01	ci right 6.666508e-01	k: 1725138	n:2590000
NOTCH1   2590000 perm   3300 sec   (785 perm/sec)   p_kst 6.660764e-01   p_cons 5.490347e-04   p_joint 3.462548e-03

Joint ci ratio: 4.128799e-02	ci left: 3.383657e-03	ci right 3.526683e-03	k: 8982	n:2600000
Cons ci ratio: 1.034884e-01	ci left: 5.229908e-04	ci right 5.804388e-04	k: 1433	n:2600000
KS ci ratio: 1.721309e-03	ci left: 6.655048e-01	ci right 6.666517e-01	k: 1731804	n:2600000
NOTCH1   2600000 perm   3322 sec   (783 perm/sec)   p_kst 6.660785e-01   p_cons 5.511538e-04   p_joint 3.454615e-03

Joint ci ratio: 4.121008e-02	ci left: 3.383585e-03	ci right 3.526332e-03	k: 9016	n:2610000
Cons ci ratio: 1.033444e-01	ci left: 5.224799e-04	ci right 5.797870e-04	k: 1437	n:2610000
KS ci ratio: 1.717965e-03	ci left: 6.655171e-01	ci right 6.666618e-01	k: 1738494	n:2610000
NOTCH1   2610000 perm   3343 sec   (781 perm/sec)   p_kst 6.660897e-01   p_cons 5.505747e-04   p_joint 3.454406e-03

Joint ci ratio: 4.113261e-02	ci left: 3.383514e-03	ci right 3.525984e-03	k: 9050	n:2620000
Cons ci ratio: 1.033086e-01	ci left: 5.208575e-04	ci right 5.779657e-04	k: 1438	n:2620000
KS ci ratio: 1.714677e-03	ci left: 6.655198e-01	ci right 6.666623e-01	k: 1745159	n:2620000
NOTCH1   2620000 perm   3366 sec   (778 perm/sec)   p_kst 6.660912e-01   p_cons 5.488550e-04   p_joint 3.454198e-03

Joint ci ratio: 4.104651e-02	ci left: 3.384949e-03	ci right 3.527174e-03	k: 9088	n:2630000
Cons ci ratio: 1.031296e-01	ci left: 5.207292e-04	ci right 5.777183e-04	k: 1443	n:2630000
KS ci ratio: 1.711284e-03	ci left: 6.655548e-01	ci right 6.666951e-01	k: 1751909	n:2630000
NOTCH1   2630000 perm   3389 sec   (776 perm/sec)   p_kst 6.661251e-01   p_cons 5.486692e-04   p_joint 3.455513e-03

Joint ci ratio: 4.101961e-02	ci left: 3.376626e-03	ci right 3.518406e-03	k: 9100	n:2640000
Cons ci ratio: 1.027742e-01	ci left: 5.224471e-04	ci right 5.794153e-04	k: 1453	n:2640000
KS ci ratio: 1.708055e-03	ci left: 6.655520e-01	ci right 6.666901e-01	k: 1758560	n:2640000
NOTCH1   2640000 perm   3412 sec   (774 perm/sec)   p_kst 6.661212e-01   p_cons 5.503788e-04   p_joint 3.446970e-03

Joint ci ratio: 4.094546e-02	ci left: 3.376209e-03	ci right 3.517709e-03	k: 9133	n:2650000
Cons ci ratio: 1.026332e-01	ci left: 5.219462e-04	ci right 5.787771e-04	k: 1457	n:2650000
KS ci ratio: 1.704832e-03	ci left: 6.655522e-01	ci right 6.666882e-01	k: 1765219	n:2650000
NOTCH1   2650000 perm   3434 sec   (772 perm/sec)   p_kst 6.661204e-01   p_cons 5.498113e-04   p_joint 3.446415e-03

Joint ci ratio: 4.057738e-02	ci left: 3.425289e-03	ci right 3.567525e-03	k: 9299	n:2660000
Cons ci ratio: 1.025629e-01	ci left: 5.207166e-04	ci right 5.773724e-04	k: 1459	n:2660000
KS ci ratio: 1.707703e-03	ci left: 6.639646e-01	ci right 6.650997e-01	k: 1767656	n:2660000
NOTCH1   2660000 perm   3456 sec   (770 perm/sec)   p_kst 6.645323e-01   p_cons 5.484962e-04   p_joint 3.495865e-03

Joint ci ratio: 4.049688e-02	ci left: 3.426177e-03	ci right 3.568162e-03	k: 9336	n:2670000
Cons ci ratio: 1.023877e-01	ci left: 5.205910e-04	ci right 5.771306e-04	k: 1464	n:2670000
KS ci ratio: 1.704609e-03	ci left: 6.639378e-01	ci right 6.650709e-01	k: 1774227	n:2670000
NOTCH1   2670000 perm   3479 sec   (768 perm/sec)   p_kst 6.645045e-01   p_cons 5.483146e-04   p_joint 3.496629e-03

Joint ci ratio: 4.041470e-02	ci left: 3.427429e-03	ci right 3.569170e-03	k: 9374	n:2680000
Cons ci ratio: 1.020746e-01	ci left: 5.219209e-04	ci right 5.784211e-04	k: 1473	n:2680000
KS ci ratio: 1.701296e-03	ci left: 6.639728e-01	ci right 6.651037e-01	k: 1780963	n:2680000
NOTCH1   2680000 perm   3501 sec   (766 perm/sec)   p_kst 6.645384e-01   p_cons 5.496269e-04   p_joint 3.497761e-03

Joint ci ratio: 4.027296e-02	ci left: 3.438975e-03	ci right 3.580684e-03	k: 9440	n:2690000
Cons ci ratio: 1.018331e-01	ci left: 5.225165e-04	ci right 5.789394e-04	k: 1480	n:2690000
KS ci ratio: 1.698202e-03	ci left: 6.639551e-01	ci right 6.650839e-01	k: 1787558	n:2690000
NOTCH1   2690000 perm   3523 sec   (763 perm/sec)   p_kst 6.645197e-01   p_cons 5.501859e-04   p_joint 3.509294e-03

Joint ci ratio: 3.981040e-02	ci left: 3.506907e-03	ci right 3.649717e-03	k: 9660	n:2700000
Cons ci ratio: 1.015250e-01	ci left: 5.238299e-04	ci right 5.802132e-04	k: 1489	n:2700000
KS ci ratio: 1.695096e-03	ci left: 6.639453e-01	ci right 6.650721e-01	k: 1794174	n:2700000
NOTCH1   2700000 perm   3546 sec   (761 perm/sec)   p_kst 6.645089e-01   p_cons 5.514815e-04   p_joint 3.577778e-03

Joint ci ratio: 3.974878e-02	ci left: 3.504926e-03	ci right 3.647430e-03	k: 9690	n:2710000
Cons ci ratio: 1.013212e-01	ci left: 5.240548e-04	ci right 5.803424e-04	k: 1495	n:2710000
KS ci ratio: 1.691944e-03	ci left: 6.639519e-01	ci right 6.650766e-01	k: 1800834	n:2710000
NOTCH1   2710000 perm   3568 sec   (759 perm/sec)   p_kst 6.645144e-01   p_cons 5.516605e-04   p_joint 3.575646e-03

Joint ci ratio: 3.967925e-02	ci left: 3.504416e-03	ci right 3.646644e-03	k: 9724	n:2720000
Cons ci ratio: 1.012198e-01	ci left: 5.232031e-04	ci right 5.793397e-04	k: 1498	n:2720000
KS ci ratio: 1.688804e-03	ci left: 6.639602e-01	ci right 6.650828e-01	k: 1807499	n:2720000
NOTCH1   2720000 perm   3591 sec   (757 perm/sec)   p_kst 6.645217e-01   p_cons 5.507353e-04   p_joint 3.575000e-03

Joint ci ratio: 3.959583e-02	ci left: 3.506449e-03	ci right 3.648453e-03	k: 9765	n:2730000
Cons ci ratio: 1.008838e-01	ci left: 5.248571e-04	ci right 5.809731e-04	k: 1508	n:2730000
KS ci ratio: 1.685738e-03	ci left: 6.639531e-01	ci right 6.650736e-01	k: 1814122	n:2730000
NOTCH1   2730000 perm   3613 sec   (756 perm/sec)   p_kst 6.645136e-01   p_cons 5.523810e-04   p_joint 3.576923e-03

Joint ci ratio: 3.951496e-02	ci left: 3.508106e-03	ci right 3.649881e-03	k: 9805	n:2740000
Cons ci ratio: 1.007837e-01	ci left: 5.240088e-04	ci right 5.799752e-04	k: 1511	n:2740000
KS ci ratio: 1.682775e-03	ci left: 6.639234e-01	ci right 6.650419e-01	k: 1820683	n:2740000
NOTCH1   2740000 perm   3637 sec   (753 perm/sec)   p_kst 6.644828e-01   p_cons 5.514599e-04   p_joint 3.578467e-03

Joint ci ratio: 3.942453e-02	ci left: 3.511551e-03	ci right 3.653133e-03	k: 9850	n:2750000
Cons ci ratio: 1.006175e-01	ci left: 5.238757e-04	ci right 5.797302e-04	k: 1516	n:2750000
KS ci ratio: 1.679722e-03	ci left: 6.639219e-01	ci right 6.650384e-01	k: 1827321	n:2750000
NOTCH1   2750000 perm   3660 sec   (751 perm/sec)   p_kst 6.644804e-01   p_cons 5.512727e-04   p_joint 3.581818e-03

Joint ci ratio: 3.936268e-02	ci left: 3.509950e-03	ci right 3.651240e-03	k: 9881	n:2760000
Cons ci ratio: 1.005844e-01	ci left: 5.223308e-04	ci right 5.780012e-04	k: 1517	n:2760000
KS ci ratio: 1.676714e-03	ci left: 6.639129e-01	ci right 6.650274e-01	k: 1833938	n:2760000
NOTCH1   2760000 perm   3683 sec   (749 perm/sec)   p_kst 6.644703e-01   p_cons 5.496377e-04   p_joint 3.580072e-03

Joint ci ratio: 3.929317e-02	ci left: 3.509789e-03	ci right 3.650818e-03	k: 9916	n:2770000
Cons ci ratio: 1.005183e-01	ci left: 5.211490e-04	ci right 5.766547e-04	k: 1519	n:2770000
KS ci ratio: 1.673746e-03	ci left: 6.638977e-01	ci right 6.650102e-01	k: 1840538	n:2770000
NOTCH1   2770000 perm   3707 sec   (747 perm/sec)   p_kst 6.644542e-01   p_cons 5.483755e-04   p_joint 3.579783e-03

Joint ci ratio: 3.923391e-02	ci left: 3.507850e-03	ci right 3.648583e-03	k: 9946	n:2780000
Cons ci ratio: 1.003863e-01	ci left: 5.206770e-04	ci right 5.760554e-04	k: 1523	n:2780000
KS ci ratio: 1.670766e-03	ci left: 6.638899e-01	ci right 6.650004e-01	k: 1847158	n:2780000
NOTCH1   2780000 perm   3730 sec   (745 perm/sec)   p_kst 6.644453e-01   p_cons 5.478417e-04   p_joint 3.577698e-03

Joint ci ratio: 3.918083e-02	ci left: 3.504859e-03	ci right 3.645278e-03	k: 9973	n:2790000
Cons ci ratio: 1.002877e-01	ci left: 5.198591e-04	ci right 5.750930e-04	k: 1526	n:2790000
KS ci ratio: 1.667724e-03	ci left: 6.639029e-01	ci right 6.650114e-01	k: 1853836	n:2790000
NOTCH1   2790000 perm   3753 sec   (743 perm/sec)   p_kst 6.644573e-01   p_cons 5.469534e-04   p_joint 3.574552e-03

Joint ci ratio: 3.910051e-02	ci left: 3.506841e-03	ci right 3.647045e-03	k: 10014	n:2800000
Cons ci ratio: 1.001239e-01	ci left: 5.197434e-04	ci right 5.748695e-04	k: 1531	n:2800000
KS ci ratio: 1.664676e-03	ci left: 6.639220e-01	ci right 6.650284e-01	k: 1860531	n:2800000
NOTCH1   2800000 perm   3776 sec   (742 perm/sec)   p_kst 6.644754e-01   p_cons 5.467857e-04   p_joint 3.576429e-03

Joint ci ratio: 3.902068e-02	ci left: 3.508810e-03	ci right 3.648800e-03	k: 10055	n:2810000
Cons ci ratio: 9.976627e-02	ci left: 5.217105e-04	ci right 5.768361e-04	k: 1542	n:2810000
KS ci ratio: 1.661728e-03	ci left: 6.639184e-01	ci right 6.650229e-01	k: 1867163	n:2810000
NOTCH1   2810000 perm   3799 sec   (740 perm/sec)   p_kst 6.644708e-01   p_cons 5.487544e-04   p_joint 3.578292e-03

Outputting figure to mutsig2_images.part000000000116/NOTCH1.16_7804_2810000_0.66447_0.00054875_0.0035783.png
                gene_name: NOTCH1
               theta_stop: 0.100 
                    nperm: 2810000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.00055 
      ci_cons_bounds_left: 0.00052 
     ci_cons_bounds_right: 0.00058 
                  p_joint: 0.0036 
     ci_joint_bounds_left: 0.0035 
    ci_joint_bounds_right: 0.0036 

Current progress: 2 percent done.
NOS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.384527e-02	ci left: 7.210814e-01	ci right 7.385845e-01	k: 7299	n:10000
Cons ci ratio: 1.610624e-02	ci left: 8.485573e-01	ci right 8.624349e-01	k: 8556	n:10000
KS ci ratio: 3.810422e-02	ci left: 5.042512e-01	ci right 5.239406e-01	k: 5141	n:10000
NOS1   10000 perm   2 sec   (4459 perm/sec)   p_kst 5.141000e-01   p_cons 8.556000e-01   p_joint 7.299000e-01

Outputting figure to mutsig2_images.part000000000116/NOS1.11_4417_10000_0.5141_0.8556_0.7299.png
                gene_name: NOS1
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 4 percent done.
NOTCH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.220355e-02	ci left: 5.873093e-01	ci right 6.066342e-01	k: 5970	n:10000
Cons ci ratio: 1.047675e-02	ci left: 9.283358e-01	ci right 9.382100e-01	k: 9334	n:10000
KS ci ratio: 5.017843e-02	ci left: 3.693784e-01	ci right 3.884922e-01	k: 3789	n:10000
NOTCH2   10000 perm   3 sec   (3766 perm/sec)   p_kst 3.789000e-01   p_cons 9.334000e-01   p_joint 5.970000e-01

Outputting figure to mutsig2_images.part000000000116/NOTCH2.10_7552_10000_0.3789_0.9334_0.597.png
                gene_name: NOTCH2
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 6 percent done.
NPAT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.690767e-02	ci left: 3.125475e-01	ci right 3.309565e-01	k: 3217	n:10000
Cons ci ratio: 2.648233e-02	ci left: 6.774048e-01	ci right 6.956864e-01	k: 6866	n:10000
KS ci ratio: 1.096588e-01	ci left: 1.070534e-01	ci right 1.195729e-01	k: 1132	n:10000
NPAT   10000 perm   2 sec   (4525 perm/sec)   p_kst 1.132000e-01   p_cons 6.866000e-01   p_joint 3.217000e-01

Joint ci ratio: 4.803522e-02	ci left: 2.437626e-01	ci right 2.558102e-01	k: 4995	n:20000
Cons ci ratio: 1.855260e-02	ci left: 6.841413e-01	ci right 6.970032e-01	k: 13812	n:20000
KS ci ratio: 8.039080e-02	ci left: 1.019626e-01	ci right 1.105523e-01	k: 2124	n:20000
NPAT   20000 perm   5 sec   (4157 perm/sec)   p_kst 1.062000e-01   p_cons 6.906000e-01   p_joint 2.497500e-01

Outputting figure to mutsig2_images.part000000000116/NPAT.9_4356_20000_0.1062_0.6906_0.24975.png
                gene_name: NPAT
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 8 percent done.
NOX4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.797425e-02	ci left: 8.187299e-01	ci right 8.336795e-01	k: 8263	n:10000
Cons ci ratio: 3.253245e-02	ci left: 5.823922e-01	ci right 6.017541e-01	k: 5921	n:10000
KS ci ratio: 4.489509e-02	ci left: 4.227607e-01	ci right 4.422786e-01	k: 4325	n:10000
NOX4   10000 perm   2 sec   (5239 perm/sec)   p_kst 4.325000e-01   p_cons 5.921000e-01   p_joint 8.263000e-01

Outputting figure to mutsig2_images.part000000000116/NOX4.8_1809_10000_0.4325_0.5921_0.8263.png
                gene_name: NOX4
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 10 percent done.
NPFFR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.063115e-02	ci left: 4.721630e-01	ci right 4.918475e-01	k: 4820	n:10000
Cons ci ratio: 6.379177e-02	ci left: 2.652752e-01	ci right 2.828566e-01	k: 2740	n:10000
KS ci ratio: 4.173737e-02	ci left: 4.587799e-01	ci right 4.784384e-01	k: 4686	n:10000
NPFFR2   10000 perm   2 sec   (5836 perm/sec)   p_kst 4.686000e-01   p_cons 2.740000e-01   p_joint 4.820000e-01

Outputting figure to mutsig2_images.part000000000116/NPFFR2.8_1591_10000_0.4686_0.274_0.482.png
                gene_name: NPFFR2
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 12 percent done.
NOTCH3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.297599e-02	ci left: 8.952868e-01	ci right 9.070783e-01	k: 9013	n:10000
KS ci ratio: 1.723077e-02	ci left: 8.307321e-01	ci right 8.452705e-01	k: 8381	n:10000
NOTCH3   10000 perm   2 sec   (4119 perm/sec)   p_kst 8.381000e-01   p_cons 9.013000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000116/NOTCH3.7_7098_10000_0.8381_0.9013_1.png
                gene_name: NOTCH3
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 14 percent done.
NOTCH2NL
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.080668e-02	ci left: 7.719526e-01	ci right 7.882839e-01	k: 7802	n:10000
Cons ci ratio: 4.130420e-02	ci left: 4.639725e-01	ci right 4.836428e-01	k: 4738	n:10000
KS ci ratio: 1.665611e-02	ci left: 8.398953e-01	ci right 8.541019e-01	k: 8471	n:10000
NOTCH2NL   10000 perm   2 sec   (6325 perm/sec)   p_kst 8.471000e-01   p_cons 4.738000e-01   p_joint 7.802000e-01

Outputting figure to mutsig2_images.part000000000116/NOTCH2NL.5_727_10000_0.8471_0.4738_0.7802.png
                gene_name: NOTCH2NL
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 16 percent done.
NOTUM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.451070e-02	ci left: 5.535118e-01	ci right 5.730513e-01	k: 5633	n:10000
Cons ci ratio: 1.429301e-02	ci left: 8.762316e-01	ci right 8.889446e-01	k: 8827	n:10000
KS ci ratio: 4.921176e-02	ci left: 3.785325e-01	ci right 3.977327e-01	k: 3881	n:10000
NOTUM   10000 perm   2 sec   (5637 perm/sec)   p_kst 3.881000e-01   p_cons 8.827000e-01   p_joint 5.633000e-01

Outputting figure to mutsig2_images.part000000000116/NOTUM.6_1535_10000_0.3881_0.8827_0.5633.png
                gene_name: NOTUM
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 18 percent done.
NOVA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.742056e-02	ci left: 1.600322e-01	ci right 1.747621e-01	k: 1673	n:10000
Cons ci ratio: 3.428867e-01	ci left: 1.068957e-02	ci right 1.520079e-02	k: 128	n:10000
KS ci ratio: 3.739367e-02	ci left: 5.136554e-01	ci right 5.333309e-01	k: 5235	n:10000
NOVA1   10000 perm   2 sec   (5628 perm/sec)   p_kst 5.235000e-01   p_cons 1.280000e-02   p_joint 1.673000e-01

Joint ci ratio: 7.020755e-02	ci left: 1.300953e-01	ci right 1.396111e-01	k: 2696	n:20000
Cons ci ratio: 2.483822e-01	ci left: 1.077173e-02	ci right 1.387247e-02	k: 245	n:20000
KS ci ratio: 2.539147e-02	ci left: 5.367661e-01	ci right 5.506212e-01	k: 10874	n:20000
NOVA1   20000 perm   4 sec   (5059 perm/sec)   p_kst 5.437000e-01   p_cons 1.225000e-02   p_joint 1.348000e-01

Joint ci ratio: 5.712478e-02	ci left: 1.317775e-01	ci right 1.395598e-01	k: 4069	n:30000
Cons ci ratio: 2.003455e-01	ci left: 1.133685e-02	ci right 1.389217e-02	k: 377	n:30000
KS ci ratio: 2.068242e-02	ci left: 5.392441e-01	ci right 5.505472e-01	k: 16347	n:30000
NOVA1   30000 perm   6 sec   (4823 perm/sec)   p_kst 5.449000e-01   p_cons 1.256667e-02   p_joint 1.356333e-01

Joint ci ratio: 5.832267e-02	ci left: 9.850771e-02	ci right 1.044503e-01	k: 4058	n:40000
Cons ci ratio: 1.726398e-01	ci left: 1.162564e-02	ci right 1.384594e-02	k: 508	n:40000
KS ci ratio: 1.779285e-02	ci left: 5.433071e-01	ci right 5.530859e-01	k: 21928	n:40000
NOVA1   40000 perm   9 sec   (4460 perm/sec)   p_kst 5.482000e-01   p_cons 1.270000e-02   p_joint 1.014500e-01

Joint ci ratio: 4.525094e-02	ci left: 1.275391e-01	ci right 1.334639e-01	k: 6524	n:50000
Cons ci ratio: 1.578745e-01	ci left: 1.121774e-02	ci right 1.315952e-02	k: 608	n:50000
KS ci ratio: 1.626133e-02	ci left: 5.331177e-01	ci right 5.418780e-01	k: 26875	n:50000
NOVA1   50000 perm   11 sec   (4404 perm/sec)   p_kst 5.375000e-01   p_cons 1.216000e-02   p_joint 1.304800e-01

Joint ci ratio: 3.985701e-02	ci left: 1.360593e-01	ci right 1.416090e-01	k: 8329	n:60000
Cons ci ratio: 1.457224e-01	ci left: 1.104768e-02	ci right 1.280000e-02	k: 714	n:60000
KS ci ratio: 1.483113e-02	ci left: 5.339507e-01	ci right 5.419456e-01	k: 32277	n:60000
NOVA1   60000 perm   14 sec   (4348 perm/sec)   p_kst 5.379500e-01   p_cons 1.190000e-02   p_joint 1.388167e-01

Joint ci ratio: 3.270802e-02	ci left: 1.674652e-01	ci right 1.730479e-01	k: 11917	n:70000
Cons ci ratio: 1.329246e-01	ci left: 1.145516e-02	ci right 1.309993e-02	k: 858	n:70000
KS ci ratio: 1.374778e-02	ci left: 5.336406e-01	ci right 5.410420e-01	k: 37614	n:70000
NOVA1   70000 perm   16 sec   (4288 perm/sec)   p_kst 5.373429e-01   p_cons 1.225714e-02   p_joint 1.702429e-01

Joint ci ratio: 3.240901e-02	ci left: 1.520887e-01	ci right 1.571114e-01	k: 12367	n:80000
Cons ci ratio: 1.246430e-01	ci left: 1.145077e-02	ci right 1.298491e-02	k: 976	n:80000
KS ci ratio: 1.285842e-02	ci left: 5.339374e-01	ci right 5.408599e-01	k: 42992	n:80000
NOVA1   80000 perm   19 sec   (4229 perm/sec)   p_kst 5.374000e-01   p_cons 1.220000e-02   p_joint 1.545875e-01

Joint ci ratio: 3.230934e-02	ci left: 1.382909e-01	ci right 1.428434e-01	k: 12650	n:90000
Cons ci ratio: 1.171979e-01	ci left: 1.155773e-02	ci right 1.300729e-02	k: 1104	n:90000
KS ci ratio: 1.211710e-02	ci left: 5.343804e-01	ci right 5.409061e-01	k: 48388	n:90000
NOVA1   90000 perm   22 sec   (4168 perm/sec)   p_kst 5.376444e-01   p_cons 1.226667e-02   p_joint 1.405556e-01

Joint ci ratio: 3.089687e-02	ci left: 1.365037e-01	ci right 1.407973e-01	k: 13864	n:100000
Cons ci ratio: 1.118674e-01	ci left: 1.145099e-02	ci right 1.281753e-02	k: 1212	n:100000
KS ci ratio: 1.149934e-02	ci left: 5.343737e-01	ci right 5.405641e-01	k: 53747	n:100000
NOVA1   100000 perm   24 sec   (4106 perm/sec)   p_kst 5.374700e-01   p_cons 1.212000e-02   p_joint 1.386400e-01

Joint ci ratio: 2.977079e-02	ci left: 1.341239e-01	ci right 1.381862e-01	k: 14976	n:110000
Cons ci ratio: 1.066331e-01	ci left: 1.148879e-02	ci right 1.279166e-02	k: 1334	n:110000
KS ci ratio: 1.096816e-02	ci left: 5.343389e-01	ci right 5.402410e-01	k: 59102	n:110000
NOVA1   110000 perm   27 sec   (4006 perm/sec)   p_kst 5.372909e-01   p_cons 1.212727e-02   p_joint 1.361455e-01

Joint ci ratio: 2.763474e-02	ci left: 1.416120e-01	ci right 1.455885e-01	k: 17231	n:120000
Cons ci ratio: 1.020709e-01	ci left: 1.152154e-02	ci right 1.276887e-02	k: 1456	n:120000
KS ci ratio: 1.085640e-02	ci left: 5.178855e-01	ci right 5.235468e-01	k: 62486	n:120000
NOVA1   120000 perm   31 sec   (3929 perm/sec)   p_kst 5.207167e-01   p_cons 1.213333e-02   p_joint 1.435917e-01

Joint ci ratio: 2.620409e-02	ci left: 1.449338e-01	ci right 1.487897e-01	k: 19091	n:130000
Cons ci ratio: 9.764214e-02	ci left: 1.164784e-02	ci right 1.285099e-02	k: 1591	n:130000
KS ci ratio: 1.041992e-02	ci left: 5.185033e-01	ci right 5.239420e-01	k: 67759	n:130000
NOVA1   130000 perm   34 sec   (3878 perm/sec)   p_kst 5.212231e-01   p_cons 1.223846e-02   p_joint 1.468538e-01

Outputting figure to mutsig2_images.part000000000116/NOVA1.6_1575_130000_0.52122_0.012238_0.14685.png
                gene_name: NOVA1
               theta_stop: 0.098 
                    nperm: 130000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.012 
      ci_cons_bounds_left: 0.012 
     ci_cons_bounds_right: 0.013 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 20 percent done.
NOX3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.194651e-02	ci left: 2.205969e-01	ci right 2.371614e-01	k: 2288	n:10000
Cons ci ratio: 6.780486e-02	ci left: 2.419322e-01	ci right 2.590133e-01	k: 2504	n:10000
KS ci ratio: 6.174011e-02	ci left: 2.783450e-01	ci right 2.961790e-01	k: 2872	n:10000
NOX3   10000 perm   2 sec   (5877 perm/sec)   p_kst 2.872000e-01   p_cons 2.504000e-01   p_joint 2.288000e-01

Outputting figure to mutsig2_images.part000000000116/NOX3.6_1759_10000_0.2872_0.2504_0.2288.png
                gene_name: NOX3
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 22 percent done.
NPAS4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.849639e-02	ci left: 3.007434e-01	ci right 3.189675e-01	k: 3098	n:10000
Cons ci ratio: 2.227578e-02	ci left: 7.473571e-01	ci right 7.642936e-01	k: 7559	n:10000
KS ci ratio: 8.358022e-02	ci left: 1.727107e-01	ci right 1.878760e-01	k: 1802	n:10000
NPAS4   10000 perm   2 sec   (5313 perm/sec)   p_kst 1.802000e-01   p_cons 7.559000e-01   p_joint 3.098000e-01

Outputting figure to mutsig2_images.part000000000116/NPAS4.6_2441_10000_0.1802_0.7559_0.3098.png
                gene_name: NPAS4
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 24 percent done.
NPHS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.864673e-02	ci left: 3.840068e-01	ci right 4.032552e-01	k: 3936	n:10000
Cons ci ratio: 3.999384e-02	ci left: 4.800563e-01	ci right 4.997496e-01	k: 4899	n:10000
KS ci ratio: 5.925716e-02	ci left: 2.952901e-01	ci right 3.134240e-01	k: 3043	n:10000
NPHS1   10000 perm   2 sec   (5036 perm/sec)   p_kst 3.043000e-01   p_cons 4.899000e-01   p_joint 3.936000e-01

Outputting figure to mutsig2_images.part000000000116/NPHS1.6_3842_10000_0.3043_0.4899_0.3936.png
                gene_name: NPHS1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 26 percent done.
NOS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.123944e-02	ci left: 9.187348e-01	ci right 9.292167e-01	k: 9241	n:10000
Cons ci ratio: 2.938462e-02	ci left: 6.307036e-01	ci right 6.496147e-01	k: 6402	n:10000
KS ci ratio: 1.194462e-02	ci left: 9.094652e-01	ci right 9.204916e-01	k: 9151	n:10000
NOS2   10000 perm   2 sec   (5621 perm/sec)   p_kst 9.151000e-01   p_cons 6.402000e-01   p_joint 9.241000e-01

Outputting figure to mutsig2_images.part000000000116/NOS2.5_3566_10000_0.9151_0.6402_0.9241.png
                gene_name: NOS2
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 28 percent done.
NPC1L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.677004e-02	ci left: 1.987996e-01	ci right 2.147715e-01	k: 2067	n:10000
Cons ci ratio: 1.400983e-01	ci left: 6.749259e-02	ci right 7.775805e-02	k: 725	n:10000
KS ci ratio: 2.192571e-02	ci left: 7.532242e-01	ci right 7.700231e-01	k: 7617	n:10000
NPC1L1   10000 perm   2 sec   (5014 perm/sec)   p_kst 7.617000e-01   p_cons 7.250000e-02   p_joint 2.067000e-01

Joint ci ratio: 5.038926e-02	ci left: 2.264120e-01	ci right 2.381659e-01	k: 4645	n:20000
Cons ci ratio: 1.009534e-01	ci left: 6.655043e-02	ci right 7.367517e-02	k: 1401	n:20000
KS ci ratio: 1.524541e-02	ci left: 7.618341e-01	ci right 7.735880e-01	k: 15355	n:20000
NPC1L1   20000 perm   4 sec   (4536 perm/sec)   p_kst 7.677500e-01   p_cons 7.005000e-02   p_joint 2.322500e-01

Joint ci ratio: 3.557061e-02	ci left: 2.830125e-01	ci right 2.932952e-01	k: 8644	n:30000
Cons ci ratio: 8.194780e-02	ci left: 6.795529e-02	ci right 7.379481e-02	k: 2125	n:30000
KS ci ratio: 1.246236e-02	ci left: 7.625096e-01	ci right 7.721052e-01	k: 23020	n:30000
NPC1L1   30000 perm   7 sec   (4357 perm/sec)   p_kst 7.673333e-01   p_cons 7.083333e-02   p_joint 2.881333e-01

Outputting figure to mutsig2_images.part000000000116/NPC1L1.5_4160_30000_0.76733_0.070833_0.28813.png
                gene_name: NPC1L1
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.071 
      ci_cons_bounds_left: 0.068 
     ci_cons_bounds_right: 0.074 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 30 percent done.
NPHP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.569156e-02	ci left: 6.904069e-01	ci right 7.084768e-01	k: 6995	n:10000
Cons ci ratio: 3.683541e-02	ci left: 5.211612e-01	ci right 5.408207e-01	k: 5310	n:10000
KS ci ratio: 2.677805e-02	ci left: 6.725690e-01	ci right 6.909251e-01	k: 6818	n:10000
NPHP4   10000 perm   2 sec   (4783 perm/sec)   p_kst 6.818000e-01   p_cons 5.310000e-01   p_joint 6.995000e-01

Outputting figure to mutsig2_images.part000000000116/NPHP4.5_4397_10000_0.6818_0.531_0.6995.png
                gene_name: NPHP4
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 32 percent done.
NOL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.066151e-02	ci left: 3.649021e-01	ci right 3.839711e-01	k: 3744	n:10000
Cons ci ratio: 3.780034e-02	ci left: 5.082525e-01	ci right 5.279369e-01	k: 5181	n:10000
KS ci ratio: 6.270362e-02	ci left: 2.721060e-01	ci right 2.898218e-01	k: 2809	n:10000
NOL4   10000 perm   2 sec   (6062 perm/sec)   p_kst 2.809000e-01   p_cons 5.181000e-01   p_joint 3.744000e-01

Outputting figure to mutsig2_images.part000000000116/NOL4.4_1961_10000_0.2809_0.5181_0.3744.png
                gene_name: NOL4
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 34 percent done.
NOLC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.812695e-02	ci left: 6.507205e-01	ci right 6.693861e-01	k: 6601	n:10000
Cons ci ratio: 9.423735e-02	ci left: 1.405053e-01	ci right 1.545008e-01	k: 1474	n:10000
KS ci ratio: 1.932481e-02	ci left: 7.965889e-01	ci right 8.122334e-01	k: 8045	n:10000
NOLC1   10000 perm   2 sec   (5740 perm/sec)   p_kst 8.045000e-01   p_cons 1.474000e-01   p_joint 6.601000e-01

Outputting figure to mutsig2_images.part000000000116/NOLC1.4_2152_10000_0.8045_0.1474_0.6601.png
                gene_name: NOLC1
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 36 percent done.
NOTCH4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.845427e-02	ci left: 8.109049e-01	ci right 8.261091e-01	k: 8186	n:10000
KS ci ratio: 2.017470e-02	ci left: 7.824912e-01	ci right 7.985392e-01	k: 7906	n:10000
NOTCH4   10000 perm   2 sec   (4502 perm/sec)   p_kst 7.906000e-01   p_cons 8.186000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000116/NOTCH4.4_6132_10000_0.7906_0.8186_1.png
                gene_name: NOTCH4
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 38 percent done.
NOX5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.153682e-02	ci left: 4.611763e-01	ci right 4.808406e-01	k: 4710	n:10000
KS ci ratio: 2.831517e-02	ci left: 6.477018e-01	ci right 6.664067e-01	k: 6571	n:10000
NOX5   10000 perm   2 sec   (5619 perm/sec)   p_kst 6.571000e-01   p_cons 4.710000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000116/NOX5.4_2395_10000_0.6571_0.471_1.png
                gene_name: NOX5
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 40 percent done.
NPBWR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.187888e-01	ci left: 2.769020e-02	ci right 3.458650e-02	k: 310	n:10000
Cons ci ratio: 6.939316e-03	ci left: 9.661506e-01	ci right 9.729722e-01	k: 9697	n:10000
KS ci ratio: 7.829804e-01	ci left: 1.538312e-03	ci right 3.568919e-03	k: 24	n:10000
NPBWR1   10000 perm   1 sec   (6722 perm/sec)   p_kst 2.400000e-03   p_cons 9.697000e-01   p_joint 3.100000e-02

Joint ci ratio: 1.804519e-01	ci left: 2.096705e-02	ci right 2.517319e-02	k: 460	n:20000
Cons ci ratio: 4.894957e-03	ci left: 9.673338e-01	ci right 9.721283e-01	k: 19396	n:20000
KS ci ratio: 4.892032e-01	ci left: 2.421370e-03	ci right 4.028444e-03	k: 63	n:20000
NPBWR1   20000 perm   3 sec   (5934 perm/sec)   p_kst 3.150000e-03   p_cons 9.698000e-01   p_joint 2.300000e-02

Joint ci ratio: 2.392788e-01	ci left: 7.805623e-03	ci right 9.957774e-03	k: 265	n:30000
Cons ci ratio: 4.165233e-03	ci left: 9.651907e-01	ci right 9.692515e-01	k: 29018	n:30000
KS ci ratio: 4.015396e-01	ci left: 2.532772e-03	ci right 3.833062e-03	k: 94	n:30000
NPBWR1   30000 perm   5 sec   (5603 perm/sec)   p_kst 3.133333e-03   p_cons 9.672667e-01   p_joint 8.833333e-03

Joint ci ratio: 2.437331e-01	ci left: 5.642032e-03	ci right 7.230899e-03	k: 256	n:40000
Cons ci ratio: 3.619113e-03	ci left: 9.652539e-01	ci right 9.687779e-01	k: 38682	n:40000
KS ci ratio: 3.558198e-01	ci left: 2.487905e-03	ci right 3.586211e-03	k: 120	n:40000
NPBWR1   40000 perm   7 sec   (5405 perm/sec)   p_kst 3.000000e-03   p_cons 9.670500e-01   p_joint 6.400000e-03

Joint ci ratio: 1.665323e-01	ci left: 1.004671e-02	ci right 1.189072e-02	k: 547	n:50000
Cons ci ratio: 3.267657e-03	ci left: 9.648241e-01	ci right 9.680014e-01	k: 48322	n:50000
KS ci ratio: 3.185198e-01	ci left: 2.539683e-03	ci right 3.519427e-03	k: 150	n:50000
NPBWR1   50000 perm   10 sec   (5260 perm/sec)   p_kst 3.000000e-03   p_cons 9.664400e-01   p_joint 1.094000e-02

Joint ci ratio: 1.789573e-01	ci left: 7.223099e-03	ci right 8.658443e-03	k: 475	n:60000
Cons ci ratio: 2.867827e-03	ci left: 9.674798e-01	ci right 9.702746e-01	k: 58134	n:60000
KS ci ratio: 2.901263e-01	ci left: 2.593710e-03	ci right 3.488764e-03	k: 181	n:60000
NPBWR1   60000 perm   12 sec   (5134 perm/sec)   p_kst 3.016667e-03   p_cons 9.689000e-01   p_joint 7.916667e-03

Joint ci ratio: 1.738061e-01	ci left: 6.587033e-03	ci right 7.854331e-03	k: 504	n:70000
Cons ci ratio: 2.634172e-03	ci left: 9.680682e-01	ci right 9.706355e-01	k: 67856	n:70000
KS ci ratio: 2.747289e-01	ci left: 2.501929e-03	ci right 3.311578e-03	k: 202	n:70000
NPBWR1   70000 perm   14 sec   (5019 perm/sec)   p_kst 2.885714e-03   p_cons 9.693714e-01   p_joint 7.200000e-03

Joint ci ratio: 1.718424e-01	ci left: 5.906984e-03	ci right 7.029259e-03	k: 516	n:80000
Cons ci ratio: 2.477796e-03	ci left: 9.678138e-01	ci right 9.702270e-01	k: 77523	n:80000
KS ci ratio: 2.603843e-01	ci left: 2.457407e-03	ci right 3.204372e-03	k: 225	n:80000
NPBWR1   80000 perm   16 sec   (4914 perm/sec)   p_kst 2.812500e-03   p_cons 9.690375e-01   p_joint 6.450000e-03

Joint ci ratio: 1.666369e-01	ci left: 5.601714e-03	ci right 6.630510e-03	k: 549	n:90000
Cons ci ratio: 2.343976e-03	ci left: 9.676773e-01	ci right 9.699590e-01	k: 87195	n:90000
KS ci ratio: 2.413628e-01	ci left: 2.569678e-03	ci right 3.285179e-03	k: 262	n:90000
NPBWR1   90000 perm   19 sec   (4813 perm/sec)   p_kst 2.911111e-03   p_cons 9.688333e-01   p_joint 6.100000e-03

Joint ci ratio: 1.402632e-01	ci left: 7.206152e-03	ci right 8.302689e-03	k: 774	n:100000
Cons ci ratio: 2.222674e-03	ci left: 9.677647e-01	ci right 9.699279e-01	k: 96886	n:100000
KS ci ratio: 2.259804e-01	ci left: 2.661084e-03	ci right 3.348245e-03	k: 299	n:100000
NPBWR1   100000 perm   21 sec   (4723 perm/sec)   p_kst 2.990000e-03   p_cons 9.688600e-01   p_joint 7.740000e-03

Joint ci ratio: 1.509802e-01	ci left: 5.630878e-03	ci right 6.559089e-03	k: 669	n:110000
Cons ci ratio: 2.112689e-03	ci left: 9.680050e-01	ci right 9.700611e-01	k: 106595	n:110000
KS ci ratio: 2.306846e-01	ci left: 2.316267e-03	ci right 2.928608e-03	k: 287	n:110000
NPBWR1   110000 perm   24 sec   (4634 perm/sec)   p_kst 2.609091e-03   p_cons 9.690455e-01   p_joint 6.081818e-03

Joint ci ratio: 1.484773e-01	ci left: 5.346065e-03	ci right 6.211415e-03	k: 692	n:120000
Cons ci ratio: 2.023414e-03	ci left: 9.680292e-01	ci right 9.699981e-01	k: 116283	n:120000
KS ci ratio: 2.216367e-01	ci left: 2.311917e-03	ci right 2.895868e-03	k: 311	n:120000
NPBWR1   120000 perm   26 sec   (4551 perm/sec)   p_kst 2.591667e-03   p_cons 9.690250e-01   p_joint 5.766667e-03

Joint ci ratio: 1.480814e-01	ci left: 4.964383e-03	ci right 5.765616e-03	k: 696	n:130000
Cons ci ratio: 1.946069e-03	ci left: 9.680045e-01	ci right 9.698976e-01	k: 125965	n:130000
KS ci ratio: 2.126266e-01	ci left: 2.330481e-03	ci right 2.892072e-03	k: 338	n:130000
NPBWR1   130000 perm   29 sec   (4472 perm/sec)   p_kst 2.600000e-03   p_cons 9.689615e-01   p_joint 5.353846e-03

Joint ci ratio: 1.490804e-01	ci left: 4.547815e-03	ci right 5.287205e-03	k: 687	n:140000
Cons ci ratio: 1.882292e-03	ci left: 9.678108e-01	ci right 9.696412e-01	k: 135623	n:140000
KS ci ratio: 2.051958e-01	ci left: 2.333250e-03	ci right 2.873394e-03	k: 363	n:140000
NPBWR1   140000 perm   32 sec   (4401 perm/sec)   p_kst 2.592857e-03   p_cons 9.687357e-01   p_joint 4.907143e-03

Joint ci ratio: 1.474983e-01	ci left: 4.340882e-03	ci right 5.038476e-03	k: 702	n:150000
Cons ci ratio: 1.820726e-03	ci left: 9.677658e-01	ci right 9.695360e-01	k: 145299	n:150000
KS ci ratio: 1.977304e-01	ci left: 2.354955e-03	ci right 2.877900e-03	k: 391	n:150000
NPBWR1   150000 perm   35 sec   (4330 perm/sec)   p_kst 2.606667e-03   p_cons 9.686600e-01   p_joint 4.680000e-03

Joint ci ratio: 1.432825e-01	ci left: 4.322526e-03	ci right 4.995617e-03	k: 744	n:160000
Cons ci ratio: 1.757559e-03	ci left: 9.679808e-01	ci right 9.696897e-01	k: 155015	n:160000
KS ci ratio: 1.917123e-01	ci left: 2.356404e-03	ci right 2.861888e-03	k: 416	n:160000
NPBWR1   160000 perm   38 sec   (4260 perm/sec)   p_kst 2.600000e-03   p_cons 9.688438e-01   p_joint 4.650000e-03

Joint ci ratio: 1.293127e-01	ci left: 5.028676e-03	ci right 5.729531e-03	k: 913	n:170000
Cons ci ratio: 1.709460e-03	ci left: 9.678494e-01	ci right 9.695111e-01	k: 164677	n:170000
KS ci ratio: 1.868491e-01	ci left: 2.341070e-03	ci right 2.829081e-03	k: 438	n:170000
NPBWR1   170000 perm   41 sec   (4195 perm/sec)   p_kst 2.576471e-03   p_cons 9.686882e-01   p_joint 5.370588e-03

Joint ci ratio: 1.253938e-01	ci left: 5.061268e-03	ci right 5.743699e-03	k: 971	n:180000
Cons ci ratio: 1.660206e-03	ci left: 9.679133e-01	ci right 9.695271e-01	k: 174371	n:180000
KS ci ratio: 1.817462e-01	ci left: 2.343493e-03	ci right 2.817198e-03	k: 463	n:180000
NPBWR1   180000 perm   44 sec   (4129 perm/sec)   p_kst 2.572222e-03   p_cons 9.687278e-01   p_joint 5.394444e-03

Joint ci ratio: 1.152438e-01	ci left: 5.703682e-03	ci right 6.406254e-03	k: 1149	n:190000
Cons ci ratio: 1.614273e-03	ci left: 9.679978e-01	ci right 9.695668e-01	k: 184070	n:190000
KS ci ratio: 1.756054e-01	ci left: 2.386074e-03	ci right 2.850361e-03	k: 496	n:190000
NPBWR1   190000 perm   47 sec   (4067 perm/sec)   p_kst 2.610526e-03   p_cons 9.687895e-01   p_joint 6.047368e-03

Joint ci ratio: 1.177591e-01	ci left: 5.185409e-03	ci right 5.839049e-03	k: 1101	n:200000
Cons ci ratio: 1.574290e-03	ci left: 9.679832e-01	ci right 9.695132e-01	k: 193751	n:200000
KS ci ratio: 1.713493e-01	ci left: 2.386343e-03	ci right 2.838265e-03	k: 521	n:200000
NPBWR1   200000 perm   50 sec   (3989 perm/sec)   p_kst 2.605000e-03   p_cons 9.687550e-01   p_joint 5.505000e-03

Joint ci ratio: 1.167670e-01	ci left: 5.026283e-03	ci right 5.654157e-03	k: 1120	n:210000
Cons ci ratio: 1.536773e-03	ci left: 9.679849e-01	ci right 9.694783e-01	k: 203435	n:210000
KS ci ratio: 1.669299e-01	ci left: 2.400399e-03	ci right 2.842080e-03	k: 549	n:210000
NPBWR1   210000 perm   53 sec   (3929 perm/sec)   p_kst 2.614286e-03   p_cons 9.687381e-01   p_joint 5.333333e-03

Joint ci ratio: 1.168336e-01	ci left: 4.793369e-03	ci right 5.392512e-03	k: 1119	n:220000
Cons ci ratio: 1.503393e-03	ci left: 9.679225e-01	ci right 9.693833e-01	k: 213105	n:220000
KS ci ratio: 1.639775e-01	ci left: 2.378432e-03	ci right 2.807568e-03	k: 569	n:220000
NPBWR1   220000 perm   57 sec   (3870 perm/sec)   p_kst 2.586364e-03   p_cons 9.686591e-01   p_joint 5.086364e-03

Joint ci ratio: 1.212201e-01	ci left: 4.251634e-03	ci right 4.804445e-03	k: 1040	n:230000
Cons ci ratio: 1.471668e-03	ci left: 9.678836e-01	ci right 9.693133e-01	k: 222779	n:230000
KS ci ratio: 1.602262e-01	ci left: 2.387653e-03	ci right 2.807648e-03	k: 596	n:230000
NPBWR1   230000 perm   60 sec   (3815 perm/sec)   p_kst 2.591304e-03   p_cons 9.686043e-01   p_joint 4.521739e-03

Joint ci ratio: 1.088055e-01	ci left: 5.086379e-03	ci right 5.675663e-03	k: 1290	n:240000
Cons ci ratio: 1.439893e-03	ci left: 9.679324e-01	ci right 9.693312e-01	k: 232473	n:240000
KS ci ratio: 1.571002e-01	ci left: 2.384196e-03	ci right 2.794630e-03	k: 620	n:240000
NPBWR1   240000 perm   64 sec   (3763 perm/sec)   p_kst 2.583333e-03   p_cons 9.686375e-01   p_joint 5.375000e-03

Joint ci ratio: 1.083124e-01	ci left: 4.929599e-03	ci right 5.497965e-03	k: 1302	n:250000
Cons ci ratio: 1.409533e-03	ci left: 9.680019e-01	ci right 9.693712e-01	k: 242173	n:250000
KS ci ratio: 1.533184e-01	ci left: 2.408015e-03	ci right 2.811654e-03	k: 651	n:250000
NPBWR1   250000 perm   67 sec   (3710 perm/sec)   p_kst 2.604000e-03   p_cons 9.686920e-01   p_joint 5.208000e-03

Joint ci ratio: 1.067697e-01	ci left: 4.882215e-03	ci right 5.436596e-03	k: 1340	n:260000
Cons ci ratio: 1.382588e-03	ci left: 9.679963e-01	ci right 9.693394e-01	k: 251855	n:260000
KS ci ratio: 1.501281e-01	ci left: 2.419004e-03	ci right 2.815290e-03	k: 679	n:260000
NPBWR1   260000 perm   71 sec   (3659 perm/sec)   p_kst 2.611538e-03   p_cons 9.686731e-01   p_joint 5.153846e-03

Joint ci ratio: 1.016157e-01	ci left: 5.202841e-03	ci right 5.763410e-03	k: 1479	n:270000
Cons ci ratio: 1.355062e-03	ci left: 9.680849e-01	ci right 9.694013e-01	k: 261562	n:270000
KS ci ratio: 1.476527e-01	ci left: 2.411422e-03	ci right 2.799377e-03	k: 702	n:270000
NPBWR1   270000 perm   75 sec   (3611 perm/sec)   p_kst 2.600000e-03   p_cons 9.687481e-01   p_joint 5.477778e-03

Joint ci ratio: 1.026772e-01	ci left: 4.912582e-03	ci right 5.447739e-03	k: 1449	n:280000
Cons ci ratio: 1.330287e-03	ci left: 9.681133e-01	ci right 9.694055e-01	k: 271254	n:280000
KS ci ratio: 1.454969e-01	ci left: 2.397548e-03	ci right 2.777150e-03	k: 723	n:280000
NPBWR1   280000 perm   78 sec   (3568 perm/sec)   p_kst 2.582143e-03   p_cons 9.687643e-01   p_joint 5.175000e-03

Joint ci ratio: 1.006151e-01	ci left: 4.944823e-03	ci right 5.472036e-03	k: 1509	n:290000
Cons ci ratio: 1.310469e-03	ci left: 9.679693e-01	ci right 9.692420e-01	k: 280897	n:290000
KS ci ratio: 1.421944e-01	ci left: 2.427899e-03	ci right 2.802841e-03	k: 757	n:290000
NPBWR1   290000 perm   82 sec   (3525 perm/sec)   p_kst 2.610345e-03   p_cons 9.686103e-01   p_joint 5.203448e-03

Joint ci ratio: 1.015748e-01	ci left: 4.688991e-03	ci right 5.193979e-03	k: 1481	n:300000
Cons ci ratio: 1.287812e-03	ci left: 9.680101e-01	ci right 9.692608e-01	k: 290592	n:300000
KS ci ratio: 1.401757e-01	ci left: 2.417711e-03	ci right 2.785336e-03	k: 779	n:300000
NPBWR1   300000 perm   86 sec   (3484 perm/sec)   p_kst 2.596667e-03   p_cons 9.686400e-01   p_joint 4.936667e-03

Joint ci ratio: 9.990338e-02	ci left: 4.694960e-03	ci right 5.191783e-03	k: 1531	n:310000
Cons ci ratio: 1.265617e-03	ci left: 9.680810e-01	ci right 9.693102e-01	k: 300297	n:310000
KS ci ratio: 1.380681e-01	ci left: 2.414445e-03	ci right 2.775599e-03	k: 803	n:310000
NPBWR1   310000 perm   90 sec   (3441 perm/sec)   p_kst 2.590323e-03   p_cons 9.687000e-01   p_joint 4.938710e-03

Joint ci ratio: 9.868873e-02	ci left: 4.664040e-03	ci right 5.151242e-03	k: 1569	n:320000
Cons ci ratio: 1.245811e-03	ci left: 9.680846e-01	ci right 9.692944e-01	k: 309982	n:320000
KS ci ratio: 1.355613e-01	ci left: 2.429536e-03	ci right 2.785817e-03	k: 833	n:320000
NPBWR1   320000 perm   94 sec   (3400 perm/sec)   p_kst 2.603125e-03   p_cons 9.686938e-01   p_joint 4.903125e-03

Joint ci ratio: 9.835052e-02	ci left: 4.555205e-03	ci right 5.029313e-03	k: 1580	n:330000
Cons ci ratio: 1.227152e-03	ci left: 9.680758e-01	ci right 9.692675e-01	k: 319663	n:330000
KS ci ratio: 1.338872e-01	ci left: 2.417404e-03	ci right 2.767180e-03	k: 854	n:330000
NPBWR1   330000 perm   98 sec   (3360 perm/sec)   p_kst 2.587879e-03   p_cons 9.686758e-01   p_joint 4.787879e-03

Joint ci ratio: 9.656362e-02	ci left: 4.590532e-03	ci right 5.059145e-03	k: 1639	n:340000
Cons ci ratio: 1.208252e-03	ci left: 9.681211e-01	ci right 9.692944e-01	k: 329362	n:340000
KS ci ratio: 1.321980e-01	ci left: 2.408855e-03	ci right 2.752651e-03	k: 876	n:340000
NPBWR1   340000 perm   102 sec   (3320 perm/sec)   p_kst 2.576471e-03   p_cons 9.687118e-01   p_joint 4.820588e-03

Joint ci ratio: 9.529434e-02	ci left: 4.582071e-03	ci right 5.043329e-03	k: 1683	n:350000
Cons ci ratio: 1.191209e-03	ci left: 9.681120e-01	ci right 9.692688e-01	k: 339043	n:350000
KS ci ratio: 1.304984e-01	ci left: 2.403585e-03	ci right 2.741877e-03	k: 899	n:350000
NPBWR1   350000 perm   107 sec   (3283 perm/sec)   p_kst 2.568571e-03   p_cons 9.686943e-01   p_joint 4.808571e-03

Joint ci ratio: 9.401916e-02	ci left: 4.579544e-03	ci right 5.034039e-03	k: 1729	n:360000
Cons ci ratio: 1.173090e-03	ci left: 9.681961e-01	ci right 9.693353e-01	k: 348757	n:360000
KS ci ratio: 1.292140e-01	ci left: 2.385193e-03	ci right 2.717339e-03	k: 917	n:360000
NPBWR1   360000 perm   111 sec   (3246 perm/sec)   p_kst 2.547222e-03   p_cons 9.687694e-01   p_joint 4.802778e-03

Joint ci ratio: 9.739117e-02	ci left: 4.147078e-03	ci right 4.574256e-03	k: 1612	n:370000
Cons ci ratio: 1.156957e-03	ci left: 9.682130e-01	ci right 9.693364e-01	k: 358448	n:370000
KS ci ratio: 1.270180e-01	ci left: 2.404445e-03	ci right 2.733152e-03	k: 949	n:370000
NPBWR1   370000 perm   115 sec   (3208 perm/sec)   p_kst 2.564865e-03   p_cons 9.687784e-01   p_joint 4.356757e-03

Joint ci ratio: 9.126357e-02	ci left: 4.611004e-03	ci right 5.054493e-03	k: 1835	n:380000
Cons ci ratio: 1.142415e-03	ci left: 9.681786e-01	ci right 9.692879e-01	k: 368120	n:380000
KS ci ratio: 1.252504e-01	ci left: 2.409981e-03	ci right 2.734520e-03	k: 976	n:380000
NPBWR1   380000 perm   120 sec   (3173 perm/sec)   p_kst 2.568421e-03   p_cons 9.687368e-01   p_joint 4.828947e-03

Joint ci ratio: 8.093175e-02	ci left: 5.737408e-03	ci right 6.223822e-03	k: 2331	n:390000
Cons ci ratio: 1.127833e-03	ci left: 9.681772e-01	ci right 9.692723e-01	k: 377804	n:390000
KS ci ratio: 1.238642e-01	ci left: 2.402839e-03	ci right 2.722572e-03	k: 998	n:390000
NPBWR1   390000 perm   124 sec   (3138 perm/sec)   p_kst 2.558974e-03   p_cons 9.687282e-01   p_joint 5.976923e-03

Joint ci ratio: 7.023466e-02	ci left: 7.456000e-03	ci right 8.001168e-03	k: 3090	n:400000
Cons ci ratio: 1.113336e-03	ci left: 9.682011e-01	ci right 9.692821e-01	k: 387498	n:400000
KS ci ratio: 1.215717e-01	ci left: 2.434854e-03	ci right 2.752420e-03	k: 1036	n:400000
NPBWR1   400000 perm   129 sec   (3103 perm/sec)   p_kst 2.590000e-03   p_cons 9.687450e-01   p_joint 7.725000e-03

Joint ci ratio: 6.946434e-02	ci left: 7.439497e-03	ci right 7.977252e-03	k: 3159	n:410000
Cons ci ratio: 1.101199e-03	ci left: 9.681231e-01	ci right 9.691922e-01	k: 397151	n:410000
KS ci ratio: 1.202460e-01	ci left: 2.429868e-03	ci right 2.743081e-03	k: 1059	n:410000
NPBWR1   410000 perm   134 sec   (3069 perm/sec)   p_kst 2.582927e-03   p_cons 9.686610e-01   p_joint 7.704878e-03

Joint ci ratio: 6.947076e-02	ci left: 7.262343e-03	ci right 7.787342e-03	k: 3159	n:420000
Cons ci ratio: 1.088078e-03	ci left: 9.681257e-01	ci right 9.691821e-01	k: 406836	n:420000
KS ci ratio: 1.184701e-01	ci left: 2.445931e-03	ci right 2.756233e-03	k: 1091	n:420000
NPBWR1   420000 perm   138 sec   (3037 perm/sec)   p_kst 2.597619e-03   p_cons 9.686571e-01   p_joint 7.521429e-03

Joint ci ratio: 6.862870e-02	ci left: 7.271716e-03	ci right 7.790767e-03	k: 3237	n:430000
Cons ci ratio: 1.074921e-03	ci left: 9.681565e-01	ci right 9.692000e-01	k: 416533	n:430000
KS ci ratio: 1.168229e-01	ci left: 2.459021e-03	ci right 2.766347e-03	k: 1122	n:430000
NPBWR1   430000 perm   143 sec   (3004 perm/sec)   p_kst 2.609302e-03   p_cons 9.686814e-01   p_joint 7.527907e-03

Joint ci ratio: 6.978365e-02	ci left: 6.871893e-03	ci right 7.370994e-03	k: 3132	n:440000
Cons ci ratio: 1.062071e-03	ci left: 9.681950e-01	ci right 9.692261e-01	k: 426234	n:440000
KS ci ratio: 1.155440e-01	ci left: 2.458301e-03	ci right 2.761944e-03	k: 1147	n:440000
NPBWR1   440000 perm   148 sec   (2973 perm/sec)   p_kst 2.606818e-03   p_cons 9.687136e-01   p_joint 7.118182e-03

Joint ci ratio: 7.521369e-02	ci left: 5.774256e-03	ci right 6.227695e-03	k: 2699	n:450000
Cons ci ratio: 1.051439e-03	ci left: 9.681289e-01	ci right 9.691495e-01	k: 435889	n:450000
KS ci ratio: 1.139174e-01	ci left: 2.474902e-03	ci right 2.776003e-03	k: 1180	n:450000
NPBWR1   450000 perm   153 sec   (2943 perm/sec)   p_kst 2.622222e-03   p_cons 9.686422e-01   p_joint 5.997778e-03

Joint ci ratio: 7.476043e-02	ci left: 5.719117e-03	ci right 6.165402e-03	k: 2732	n:460000
Cons ci ratio: 1.040260e-03	ci left: 9.681161e-01	ci right 9.691258e-01	k: 445567	n:460000
KS ci ratio: 1.127306e-01	ci left: 2.473907e-03	ci right 2.771543e-03	k: 1205	n:460000
NPBWR1   460000 perm   158 sec   (2913 perm/sec)   p_kst 2.619565e-03   p_cons 9.686239e-01   p_joint 5.939130e-03

Joint ci ratio: 7.786303e-02	ci left: 5.154915e-03	ci right 5.574622e-03	k: 2520	n:470000
Cons ci ratio: 1.029250e-03	ci left: 9.681146e-01	ci right 9.691136e-01	k: 455250	n:470000
KS ci ratio: 1.113085e-01	ci left: 2.485381e-03	ci right 2.780378e-03	k: 1236	n:470000
NPBWR1   470000 perm   163 sec   (2883 perm/sec)   p_kst 2.629787e-03   p_cons 9.686170e-01   p_joint 5.361702e-03

Joint ci ratio: 7.212325e-02	ci left: 5.895991e-03	ci right 6.339169e-03	k: 2935	n:480000
Cons ci ratio: 1.018548e-03	ci left: 9.681154e-01	ci right 9.691040e-01	k: 464934	n:480000
KS ci ratio: 1.102007e-01	ci left: 2.484243e-03	ci right 2.775979e-03	k: 1261	n:480000
NPBWR1   480000 perm   168 sec   (2854 perm/sec)   p_kst 2.627083e-03   p_cons 9.686125e-01   p_joint 6.114583e-03

Joint ci ratio: 7.157800e-02	ci left: 5.865848e-03	ci right 6.303288e-03	k: 2980	n:490000
Cons ci ratio: 1.008443e-03	ci left: 9.680997e-01	ci right 9.690784e-01	k: 474610	n:490000
KS ci ratio: 1.097685e-01	ci left: 2.453389e-03	ci right 2.740298e-03	k: 1271	n:490000
NPBWR1   490000 perm   173 sec   (2825 perm/sec)   p_kst 2.593878e-03   p_cons 9.685918e-01   p_joint 6.081633e-03

Joint ci ratio: 7.064670e-02	ci left: 5.903726e-03	ci right 6.338027e-03	k: 3059	n:500000
Cons ci ratio: 9.981400e-04	ci left: 9.681149e-01	ci right 9.690837e-01	k: 484301	n:500000
KS ci ratio: 1.082463e-01	ci left: 2.474359e-03	ci right 2.759453e-03	k: 1307	n:500000
NPBWR1   500000 perm   179 sec   (2797 perm/sec)   p_kst 2.614000e-03   p_cons 9.686020e-01   p_joint 6.118000e-03

Joint ci ratio: 7.267351e-02	ci left: 5.466337e-03	ci right 5.880486e-03	k: 2892	n:510000
Cons ci ratio: 9.878917e-04	ci left: 9.681454e-01	ci right 9.691042e-01	k: 494000	n:510000
KS ci ratio: 1.068654e-01	ci left: 2.490717e-03	ci right 2.773804e-03	k: 1341	n:510000
NPBWR1   510000 perm   184 sec   (2769 perm/sec)   p_kst 2.629412e-03   p_cons 9.686275e-01   p_joint 5.670588e-03

Joint ci ratio: 7.266487e-02	ci left: 5.363093e-03	ci right 5.769369e-03	k: 2893	n:520000
Cons ci ratio: 9.790664e-04	ci left: 9.681050e-01	ci right 9.690552e-01	k: 503663	n:520000
KS ci ratio: 1.060786e-01	ci left: 2.480255e-03	ci right 2.759948e-03	k: 1361	n:520000
NPBWR1   520000 perm   190 sec   (2743 perm/sec)   p_kst 2.617308e-03   p_cons 9.685827e-01   p_joint 5.563462e-03

Joint ci ratio: 7.223083e-02	ci left: 5.326740e-03	ci right 5.727751e-03	k: 2928	n:530000
Cons ci ratio: 9.700207e-04	ci left: 9.680947e-01	ci right 9.690360e-01	k: 513341	n:530000
KS ci ratio: 1.050424e-01	ci left: 2.483056e-03	ci right 2.760161e-03	k: 1388	n:530000
NPBWR1   530000 perm   195 sec   (2717 perm/sec)   p_kst 2.618868e-03   p_cons 9.685679e-01   p_joint 5.524528e-03

Joint ci ratio: 7.332482e-02	ci left: 5.071712e-03	ci right 5.459551e-03	k: 2842	n:540000
Cons ci ratio: 9.616592e-04	ci left: 9.680568e-01	ci right 9.689900e-01	k: 523004	n:540000
KS ci ratio: 1.040361e-01	ci left: 2.485767e-03	ci right 2.760354e-03	k: 1415	n:540000
NPBWR1   540000 perm   201 sec   (2690 perm/sec)   p_kst 2.620370e-03   p_cons 9.685259e-01   p_joint 5.262963e-03

Joint ci ratio: 7.296803e-02	ci left: 5.029473e-03	ci right 5.412131e-03	k: 2870	n:550000
Cons ci ratio: 9.532246e-04	ci left: 9.680387e-01	ci right 9.689637e-01	k: 532677	n:550000
KS ci ratio: 1.032016e-01	ci left: 2.481305e-03	ci right 2.753067e-03	k: 1438	n:550000
NPBWR1   550000 perm   206 sec   (2664 perm/sec)   p_kst 2.614545e-03   p_cons 9.685036e-01   p_joint 5.218182e-03

Joint ci ratio: 6.840287e-02	ci left: 5.630866e-03	ci right 6.031416e-03	k: 3264	n:560000
Cons ci ratio: 9.440951e-04	ci left: 9.680806e-01	ci right 9.689967e-01	k: 542383	n:560000
KS ci ratio: 1.023167e-01	ci left: 2.480491e-03	ci right 2.749695e-03	k: 1463	n:560000
NPBWR1   560000 perm   212 sec   (2636 perm/sec)   p_kst 2.612500e-03   p_cons 9.685411e-01   p_joint 5.828571e-03

Joint ci ratio: 6.865001e-02	ci left: 5.492406e-03	ci right 5.884574e-03	k: 3241	n:570000
Cons ci ratio: 9.351678e-04	ci left: 9.681246e-01	ci right 9.690321e-01	k: 552091	n:570000
KS ci ratio: 1.015912e-01	ci left: 2.472876e-03	ci right 2.739237e-03	k: 1484	n:570000
NPBWR1   570000 perm   218 sec   (2610 perm/sec)   p_kst 2.603509e-03   p_cons 9.685807e-01   p_joint 5.685965e-03

Joint ci ratio: 6.650090e-02	ci left: 5.757077e-03	ci right 6.154779e-03	k: 3453	n:580000
Cons ci ratio: 9.275119e-04	ci left: 9.680994e-01	ci right 9.689994e-01	k: 561760	n:580000
KS ci ratio: 1.006799e-01	ci left: 2.475615e-03	ci right 2.739737e-03	k: 1511	n:580000
NPBWR1   580000 perm   226 sec   (2568 perm/sec)   p_kst 2.605172e-03   p_cons 9.685517e-01   p_joint 5.953448e-03

Joint ci ratio: 6.583652e-02	ci left: 5.776182e-03	ci right 6.171065e-03	k: 3523	n:590000
Cons ci ratio: 9.194262e-04	ci left: 9.681160e-01	ci right 9.690082e-01	k: 571453	n:590000
KS ci ratio: 9.972786e-02	ci left: 2.481576e-03	ci right 2.743685e-03	k: 1540	n:590000
NPBWR1   590000 perm   232 sec   (2545 perm/sec)   p_kst 2.610169e-03   p_cons 9.685644e-01   p_joint 5.971186e-03

Outputting figure to mutsig2_images.part000000000116/NPBWR1.4_990_590000_0.0026102_0.96856_0.0059712.png
                gene_name: NPBWR1
               theta_stop: 0.100 
                    nperm: 590000 
                     p_ks: 0.0026 
        ci_ks_bounds_left: 0.0025 
       ci_ks_bounds_right: 0.0027 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.0060 
     ci_joint_bounds_left: 0.0058 
    ci_joint_bounds_right: 0.0062 

Current progress: 42 percent done.
NPEPPS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.141213e-02	ci left: 1.804823e-01	ci right 1.958998e-01	k: 1881	n:10000
Cons ci ratio: 1.302053e-01	ci left: 7.766482e-02	ci right 8.857947e-02	k: 830	n:10000
KS ci ratio: 1.185194e-01	ci left: 9.272705e-02	ci right 1.045080e-01	k: 985	n:10000
NPEPPS   10000 perm   2 sec   (5511 perm/sec)   p_kst 9.850000e-02   p_cons 8.300000e-02   p_joint 1.881000e-01

Joint ci ratio: 6.586617e-02	ci left: 1.454720e-01	ci right 1.554299e-01	k: 3008	n:20000
Cons ci ratio: 9.283455e-02	ci left: 7.803778e-02	ci right 8.568430e-02	k: 1636	n:20000
KS ci ratio: 8.483743e-02	ci left: 9.234354e-02	ci right 1.005742e-01	k: 1928	n:20000
NPEPPS   20000 perm   4 sec   (4940 perm/sec)   p_kst 9.640000e-02   p_cons 8.180000e-02   p_joint 1.504000e-01

Outputting figure to mutsig2_images.part000000000116/NPEPPS.4_2852_20000_0.0964_0.0818_0.1504.png
                gene_name: NPEPPS
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.096 
        ci_ks_bounds_left: 0.092 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.082 
      ci_cons_bounds_left: 0.078 
     ci_cons_bounds_right: 0.086 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 44 percent done.
NPR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.098941e-02	ci left: 9.219324e-01	ci right 9.322172e-01	k: 9272	n:10000
Cons ci ratio: 2.253522e-02	ci left: 7.430088e-01	ci right 7.600445e-01	k: 7516	n:10000
KS ci ratio: 1.969253e-02	ci left: 7.905018e-01	ci right 8.063240e-01	k: 7985	n:10000
NPR2   10000 perm   2 sec   (5215 perm/sec)   p_kst 7.985000e-01   p_cons 7.516000e-01   p_joint 9.272000e-01

Outputting figure to mutsig2_images.part000000000116/NPR2.4_3232_10000_0.7985_0.7516_0.9272.png
                gene_name: NPR2
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 46 percent done.
NPVF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.838216e-02	ci left: 1.302192e-01	ci right 1.437930e-01	k: 1369	n:10000
Cons ci ratio: 1.212673e-01	ci left: 8.883535e-02	ci right 1.004021e-01	k: 945	n:10000
KS ci ratio: 7.178385e-02	ci left: 2.213865e-01	ci right 2.379712e-01	k: 2296	n:10000
NPVF   10000 perm   1 sec   (6810 perm/sec)   p_kst 2.296000e-01   p_cons 9.450000e-02   p_joint 1.369000e-01

Joint ci ratio: 6.690320e-02	ci left: 1.415767e-01	ci right 1.514263e-01	k: 2929	n:20000
Cons ci ratio: 8.258185e-02	ci left: 9.705339e-02	ci right 1.054629e-01	k: 2024	n:20000
KS ci ratio: 5.135464e-02	ci left: 2.197729e-01	ci right 2.314070e-01	k: 4511	n:20000
NPVF   20000 perm   3 sec   (6072 perm/sec)   p_kst 2.255500e-01   p_cons 1.012000e-01   p_joint 1.464500e-01

Outputting figure to mutsig2_images.part000000000116/NPVF.4_603_20000_0.22555_0.1012_0.14645.png
                gene_name: NPVF
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.097 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 48 percent done.
NPY2R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.139578e-01	ci left: 9.973948e-02	ci right 1.118912e-01	k: 1057	n:10000
Cons ci ratio: 6.509927e-02	ci left: 2.573588e-01	ci right 2.747777e-01	k: 2660	n:10000
KS ci ratio: 1.226322e-01	ci left: 8.698787e-02	ci right 9.845066e-02	k: 926	n:10000
NPY2R   10000 perm   2 sec   (6556 perm/sec)   p_kst 9.260000e-02   p_cons 2.660000e-01   p_joint 1.057000e-01

Joint ci ratio: 7.220088e-02	ci left: 1.237929e-01	ci right 1.331154e-01	k: 2568	n:20000
Cons ci ratio: 4.543313e-02	ci left: 2.650472e-01	ci right 2.774194e-01	k: 5424	n:20000
KS ci ratio: 8.707860e-02	ci left: 8.797988e-02	ci right 9.603919e-02	k: 1839	n:20000
NPY2R   20000 perm   3 sec   (5811 perm/sec)   p_kst 9.195000e-02   p_cons 2.712000e-01   p_joint 1.284000e-01

Outputting figure to mutsig2_images.part000000000116/NPY2R.4_1150_20000_0.09195_0.2712_0.1284.png
                gene_name: NPY2R
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.092 
        ci_ks_bounds_left: 0.088 
       ci_ks_bounds_right: 0.096 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 50 percent done.
NPY5R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.413363e-02	ci left: 2.103351e-01	ci right 2.266292e-01	k: 2184	n:10000
Cons ci ratio: 1.017651e-01	ci left: 1.225867e-01	ci right 1.358301e-01	k: 1291	n:10000
KS ci ratio: 5.286200e-02	ci left: 3.453165e-01	ci right 3.641682e-01	k: 3547	n:10000
NPY5R   10000 perm   2 sec   (6151 perm/sec)   p_kst 3.547000e-01   p_cons 1.291000e-01   p_joint 2.184000e-01

Joint ci ratio: 4.190622e-02	ci left: 2.979271e-01	ci right 3.107298e-01	k: 6086	n:20000
Cons ci ratio: 7.208824e-02	ci left: 1.241375e-01	ci right 1.334707e-01	k: 2575	n:20000
KS ci ratio: 3.721627e-02	ci left: 3.501072e-01	ci right 3.634345e-01	k: 7135	n:20000
NPY5R   20000 perm   4 sec   (5482 perm/sec)   p_kst 3.567500e-01   p_cons 1.287500e-01   p_joint 3.043000e-01

Outputting figure to mutsig2_images.part000000000116/NPY5R.4_1342_20000_0.35675_0.12875_0.3043.png
                gene_name: NPY5R
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 52 percent done.
NR0B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.479635e-02	ci left: 7.052335e-01	ci right 7.230416e-01	k: 7142	n:10000
Cons ci ratio: 3.749872e-02	ci left: 5.122545e-01	ci right 5.319326e-01	k: 5221	n:10000
KS ci ratio: 2.951867e-02	ci left: 6.285922e-01	ci right 6.475273e-01	k: 6381	n:10000
NR0B1   10000 perm   2 sec   (6480 perm/sec)   p_kst 6.381000e-01   p_cons 5.221000e-01   p_joint 7.142000e-01

Outputting figure to mutsig2_images.part000000000116/NR0B1.4_1421_10000_0.6381_0.5221_0.7142.png
                gene_name: NR0B1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.72 

Current progress: 54 percent done.
NOL9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.703470e-02	ci left: 4.001384e-01	ci right 4.195142e-01	k: 4098	n:10000
Cons ci ratio: 3.628446e-02	ci left: 5.286693e-01	ci right 5.483083e-01	k: 5385	n:10000
KS ci ratio: 9.635428e-02	ci left: 1.351158e-01	ci right 1.488935e-01	k: 1419	n:10000
NOL9   10000 perm   2 sec   (6058 perm/sec)   p_kst 1.419000e-01   p_cons 5.385000e-01   p_joint 4.098000e-01

Outputting figure to mutsig2_images.part000000000116/NOL9.3_2157_10000_0.1419_0.5385_0.4098.png
                gene_name: NOL9
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 56 percent done.
NOP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.657465e-02	ci left: 6.758935e-01	ci right 6.941986e-01	k: 6851	n:10000
KS ci ratio: 2.493607e-02	ci left: 7.029129e-01	ci right 7.207635e-01	k: 7119	n:10000
NOP2   10000 perm   2 sec   (5848 perm/sec)   p_kst 7.119000e-01   p_cons 6.851000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000116/NOP2.3_2487_10000_0.7119_0.6851_1.png
                gene_name: NOP2
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 58 percent done.
NOP56
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.212039e-02	ci left: 9.070994e-01	ci right 9.182588e-01	k: 9128	n:10000
Cons ci ratio: 1.629469e-02	ci left: 8.456012e-01	ci right 8.595928e-01	k: 8527	n:10000
KS ci ratio: 2.913003e-02	ci left: 6.347256e-01	ci right 6.535903e-01	k: 6442	n:10000
NOP56   10000 perm   2 sec   (6178 perm/sec)   p_kst 6.442000e-01   p_cons 8.527000e-01   p_joint 9.128000e-01

Outputting figure to mutsig2_images.part000000000116/NOP56.3_1833_10000_0.6442_0.8527_0.9128.png
                gene_name: NOP56
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 60 percent done.
NOV
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.786111e-02	ci left: 3.917725e-01	ci right 4.110850e-01	k: 4014	n:10000
Cons ci ratio: 1.008704e-01	ci left: 1.245431e-01	ci right 1.378726e-01	k: 1311	n:10000
KS ci ratio: 2.583216e-02	ci left: 6.880881e-01	ci right 7.061970e-01	k: 6972	n:10000
NOV   10000 perm   1 sec   (6751 perm/sec)   p_kst 6.972000e-01   p_cons 1.311000e-01   p_joint 4.014000e-01

Joint ci ratio: 3.495206e-02	ci left: 3.792948e-01	ci right 3.928383e-01	k: 7721	n:20000
Cons ci ratio: 7.200805e-02	ci left: 1.243836e-01	ci right 1.337245e-01	k: 2580	n:20000
KS ci ratio: 1.828392e-02	ci left: 6.903765e-01	ci right 7.031662e-01	k: 13936	n:20000
NOV   20000 perm   3 sec   (5978 perm/sec)   p_kst 6.968000e-01   p_cons 1.290000e-01   p_joint 3.860500e-01

Outputting figure to mutsig2_images.part000000000116/NOV.3_1094_20000_0.6968_0.129_0.38605.png
                gene_name: NOV
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.39 

Current progress: 62 percent done.
NPAS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.289722e-02	ci left: 7.369431e-01	ci right 7.541136e-01	k: 7456	n:10000
KS ci ratio: 5.275781e-03	ci left: 9.795206e-01	ci right 9.847932e-01	k: 9823	n:10000
NPAS3   10000 perm   2 sec   (5780 perm/sec)   p_kst 9.823000e-01   p_cons 7.456000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000116/NPAS3.3_2905_10000_0.9823_0.7456_1.png
                gene_name: NPAS3
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 64 percent done.
NPBWR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.125355e-01	ci left: 1.020789e-01	ci right 1.143503e-01	k: 1081	n:10000
Cons ci ratio: 3.593554e-02	ci left: 5.334756e-01	ci right 5.530992e-01	k: 5433	n:10000
KS ci ratio: 2.260160e-01	ci left: 2.589329e-02	ci right 3.258470e-02	k: 291	n:10000
NPBWR2   10000 perm   2 sec   (6625 perm/sec)   p_kst 2.910000e-02   p_cons 5.433000e-01   p_joint 1.081000e-01

Joint ci ratio: 6.181659e-02	ci left: 1.622002e-01	ci right 1.725967e-01	k: 3347	n:20000
Cons ci ratio: 2.552737e-02	ci left: 5.341133e-01	ci right 5.479747e-01	k: 10821	n:20000
KS ci ratio: 1.560097e-01	ci left: 2.820837e-02	ci right 3.302937e-02	k: 611	n:20000
NPBWR2   20000 perm   3 sec   (5865 perm/sec)   p_kst 3.055000e-02   p_cons 5.410500e-01   p_joint 1.673500e-01

Joint ci ratio: 6.025532e-02	ci left: 1.198956e-01	ci right 1.273775e-01	k: 3708	n:30000
Cons ci ratio: 2.083718e-02	ci left: 5.355409e-01	ci right 5.468511e-01	k: 16236	n:30000
KS ci ratio: 1.252860e-01	ci left: 2.961697e-02	ci right 3.360776e-02	k: 947	n:30000
NPBWR2   30000 perm   5 sec   (5588 perm/sec)   p_kst 3.156667e-02   p_cons 5.412000e-01   p_joint 1.236000e-01

Joint ci ratio: 5.551710e-02	ci left: 1.077398e-01	ci right 1.139168e-01	k: 4432	n:40000
Cons ci ratio: 1.801668e-02	ci left: 5.371020e-01	ci right 5.468919e-01	k: 21680	n:40000
KS ci ratio: 1.091269e-01	ci left: 2.954216e-02	ci right 3.297633e-02	k: 1249	n:40000
NPBWR2   40000 perm   7 sec   (5402 perm/sec)   p_kst 3.122500e-02   p_cons 5.420000e-01   p_joint 1.108000e-01

Joint ci ratio: 5.965211e-02	ci left: 7.712359e-02	ci right 8.188537e-02	k: 3974	n:50000
Cons ci ratio: 1.608228e-02	ci left: 5.386212e-01	ci right 5.473738e-01	k: 27150	n:50000
KS ci ratio: 9.788146e-02	ci left: 2.955668e-02	ci right 3.261808e-02	k: 1553	n:50000
NPBWR2   50000 perm   10 sec   (5255 perm/sec)   p_kst 3.106000e-02   p_cons 5.430000e-01   p_joint 7.948000e-02

Outputting figure to mutsig2_images.part000000000116/NPBWR2.3_1005_50000_0.03106_0.543_0.07948.png
                gene_name: NPBWR2
               theta_stop: 0.098 
                    nperm: 50000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.030 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.079 
     ci_joint_bounds_left: 0.077 
    ci_joint_bounds_right: 0.082 

Current progress: 66 percent done.
NPEPL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.096203e-02	ci left: 1.821553e-01	ci right 1.976258e-01	k: 1898	n:10000
KS ci ratio: 1.783012e-02	ci left: 8.210683e-01	ci right 8.359398e-01	k: 8286	n:10000
NPEPL1   10000 perm   2 sec   (6506 perm/sec)   p_kst 8.286000e-01   p_cons 1.898000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000116/NPEPL1.3_1466_10000_0.8286_0.1898_1.png
                gene_name: NPEPL1
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
NPHP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.550139e-01	ci left: 5.542402e-02	ci right 6.483425e-02	k: 600	n:10000
Cons ci ratio: 2.897772e-02	ci left: 6.371392e-01	ci right 6.559753e-01	k: 6466	n:10000
KS ci ratio: 3.073991e-01	ci left: 1.354008e-02	ci right 1.854760e-02	k: 159	n:10000
NPHP3   10000 perm   2 sec   (5330 perm/sec)   p_kst 1.590000e-02   p_cons 6.466000e-01   p_joint 6.000000e-02

Joint ci ratio: 1.496921e-01	ci left: 3.066372e-02	ci right 3.567321e-02	k: 662	n:20000
Cons ci ratio: 2.048898e-02	ci left: 6.399793e-01	ci right 6.532781e-01	k: 12933	n:20000
KS ci ratio: 2.253759e-01	ci left: 1.321953e-02	ci right 1.662363e-02	k: 297	n:20000
NPHP3   20000 perm   4 sec   (4777 perm/sec)   p_kst 1.485000e-02   p_cons 6.466500e-01   p_joint 3.310000e-02

Joint ci ratio: 1.095946e-01	ci left: 3.865423e-02	ci right 4.316856e-02	k: 1226	n:30000
Cons ci ratio: 1.679598e-02	ci left: 6.393875e-01	ci right 6.502511e-01	k: 19345	n:30000
KS ci ratio: 1.805657e-01	ci left: 1.406885e-02	ci right 1.689278e-02	k: 463	n:30000
NPHP3   30000 perm   7 sec   (4589 perm/sec)   p_kst 1.543333e-02   p_cons 6.448333e-01   p_joint 4.086667e-02

Joint ci ratio: 9.898880e-02	ci left: 3.585456e-02	ci right 3.961294e-02	k: 1508	n:40000
Cons ci ratio: 1.451754e-02	ci left: 6.410149e-01	ci right 6.504140e-01	k: 25829	n:40000
KS ci ratio: 1.618662e-01	ci left: 1.327937e-02	ci right 1.564189e-02	k: 577	n:40000
NPHP3   40000 perm   9 sec   (4456 perm/sec)   p_kst 1.442500e-02   p_cons 6.457250e-01   p_joint 3.770000e-02

Joint ci ratio: 9.134971e-02	ci left: 3.389510e-02	ci right 3.715912e-02	k: 1775	n:50000
Cons ci ratio: 1.298452e-02	ci left: 6.415293e-01	ci right 6.499337e-01	k: 32287	n:50000
KS ci ratio: 1.460653e-01	ci left: 1.316194e-02	ci right 1.525502e-02	k: 709	n:50000
NPHP3   50000 perm   11 sec   (4351 perm/sec)   p_kst 1.418000e-02   p_cons 6.457400e-01   p_joint 3.550000e-02

Joint ci ratio: 8.374162e-02	ci left: 3.375595e-02	ci right 3.672256e-02	k: 2113	n:60000
Cons ci ratio: 1.181715e-02	ci left: 6.432943e-01	ci right 6.509581e-01	k: 38828	n:60000
KS ci ratio: 1.343828e-01	ci left: 1.304290e-02	ci right 1.493787e-02	k: 838	n:60000
NPHP3   60000 perm   14 sec   (4264 perm/sec)   p_kst 1.396667e-02   p_cons 6.471333e-01   p_joint 3.521667e-02

Joint ci ratio: 8.256080e-02	ci left: 2.991039e-02	ci right 3.250010e-02	k: 2183	n:70000
Cons ci ratio: 1.094035e-02	ci left: 6.435897e-01	ci right 6.506838e-01	k: 45300	n:70000
KS ci ratio: 1.239550e-01	ci left: 1.321192e-02	ci right 1.497155e-02	k: 985	n:70000
NPHP3   70000 perm   17 sec   (4189 perm/sec)   p_kst 1.407143e-02   p_cons 6.471429e-01   p_joint 3.118571e-02

Joint ci ratio: 7.053209e-02	ci left: 3.586227e-02	ci right 3.849643e-02	k: 2973	n:80000
Cons ci ratio: 1.022381e-02	ci left: 6.442656e-01	ci right 6.508987e-01	k: 51807	n:80000
KS ci ratio: 1.163616e-01	ci left: 1.317298e-02	ci right 1.481255e-02	k: 1118	n:80000
NPHP3   80000 perm   19 sec   (4116 perm/sec)   p_kst 1.397500e-02   p_cons 6.475875e-01   p_joint 3.716250e-02

Joint ci ratio: 7.043869e-02	ci left: 3.209364e-02	ci right 3.444768e-02	k: 2993	n:90000
Cons ci ratio: 9.648003e-03	ci left: 6.440345e-01	ci right 6.502893e-01	k: 58245	n:90000
KS ci ratio: 1.098341e-01	ci left: 1.318850e-02	ci right 1.473195e-02	k: 1255	n:90000
NPHP3   90000 perm   22 sec   (4045 perm/sec)   p_kst 1.394444e-02   p_cons 6.471667e-01   p_joint 3.325556e-02

Joint ci ratio: 6.723983e-02	ci left: 3.176366e-02	ci right 3.398355e-02	k: 3286	n:100000
Cons ci ratio: 9.150035e-03	ci left: 6.443393e-01	ci right 6.502721e-01	k: 64731	n:100000
KS ci ratio: 1.039171e-01	ci left: 1.330041e-02	ci right 1.476798e-02	k: 1402	n:100000
NPHP3   100000 perm   25 sec   (3981 perm/sec)   p_kst 1.402000e-02   p_cons 6.473100e-01   p_joint 3.286000e-02

Joint ci ratio: 6.572266e-02	ci left: 3.029671e-02	ci right 3.236446e-02	k: 3445	n:110000
Cons ci ratio: 8.705837e-03	ci left: 6.454425e-01	ci right 6.510952e-01	k: 71310	n:110000
KS ci ratio: 9.850973e-02	ci left: 1.349136e-02	ci right 1.489806e-02	k: 1560	n:110000
NPHP3   110000 perm   28 sec   (3918 perm/sec)   p_kst 1.418182e-02   p_cons 6.482727e-01   p_joint 3.131818e-02

Outputting figure to mutsig2_images.part000000000116/NPHP3.3_4101_110000_0.014182_0.64827_0.031318.png
                gene_name: NPHP3
               theta_stop: 0.099 
                    nperm: 110000 
                     p_ks: 0.014 
        ci_ks_bounds_left: 0.013 
       ci_ks_bounds_right: 0.015 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.031 
     ci_joint_bounds_left: 0.030 
    ci_joint_bounds_right: 0.032 

Current progress: 70 percent done.
NPHS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.154130e-02	ci left: 2.225711e-01	ci right 2.391859e-01	k: 2308	n:10000
Cons ci ratio: 1.624806e-01	ci left: 5.051566e-02	ci right 5.954576e-02	k: 549	n:10000
KS ci ratio: 3.653334e-02	ci left: 5.252653e-01	ci right 5.449142e-01	k: 5351	n:10000
NPHS2   10000 perm   2 sec   (6316 perm/sec)   p_kst 5.351000e-01   p_cons 5.490000e-02   p_joint 2.308000e-01

Joint ci ratio: 6.403515e-02	ci left: 1.527233e-01	ci right 1.628764e-01	k: 3155	n:20000
Cons ci ratio: 1.169904e-01	ci left: 5.003249e-02	ci right 5.629822e-02	k: 1062	n:20000
KS ci ratio: 2.581397e-02	ci left: 5.285582e-01	ci right 5.424314e-01	k: 10710	n:20000
NPHS2   20000 perm   4 sec   (5672 perm/sec)   p_kst 5.355000e-01   p_cons 5.310000e-02   p_joint 1.577500e-01

Joint ci ratio: 4.383885e-02	ci left: 2.057993e-01	ci right 2.150569e-01	k: 6312	n:30000
Cons ci ratio: 9.432627e-02	ci left: 5.186009e-02	ci right 5.702663e-02	k: 1632	n:30000
KS ci ratio: 2.106478e-02	ci left: 5.301367e-01	ci right 5.414564e-01	k: 16074	n:30000
NPHS2   30000 perm   6 sec   (5421 perm/sec)   p_kst 5.358000e-01   p_cons 5.440000e-02   p_joint 2.104000e-01

Outputting figure to mutsig2_images.part000000000116/NPHS2.3_1184_30000_0.5358_0.0544_0.2104.png
                gene_name: NPHS2
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.054 
      ci_cons_bounds_left: 0.052 
     ci_cons_bounds_right: 0.057 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 72 percent done.
NPR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.704001e-02	ci left: 8.337856e-01	ci right 8.482152e-01	k: 8411	n:10000
Cons ci ratio: 4.123801e-02	ci left: 4.647714e-01	ci right 4.844434e-01	k: 4746	n:10000
KS ci ratio: 3.178368e-02	ci left: 5.936327e-01	ci right 6.129071e-01	k: 6033	n:10000
NPR1   10000 perm   2 sec   (5578 perm/sec)   p_kst 6.033000e-01   p_cons 4.746000e-01   p_joint 8.411000e-01

Outputting figure to mutsig2_images.part000000000116/NPR1.3_3274_10000_0.6033_0.4746_0.8411.png
                gene_name: NPR1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 74 percent done.
NPR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.268230e-01	ci left: 8.164409e-02	ci right 9.279774e-02	k: 871	n:10000
Cons ci ratio: 2.788293e-02	ci left: 6.546456e-01	ci right 6.732588e-01	k: 6640	n:10000
KS ci ratio: 3.880608e-01	ci left: 8.143597e-03	ci right 1.214950e-02	k: 100	n:10000
NPR3   10000 perm   2 sec   (6203 perm/sec)   p_kst 1.000000e-02   p_cons 6.640000e-01   p_joint 8.710000e-02

Joint ci ratio: 1.570719e-01	ci left: 2.782361e-02	ci right 3.261426e-02	k: 603	n:20000
Cons ci ratio: 1.985852e-02	ci left: 6.541906e-01	ci right 6.673626e-01	k: 13216	n:20000
KS ci ratio: 2.671533e-01	ci left: 9.227203e-03	ci right 1.211771e-02	k: 212	n:20000
NPR3   20000 perm   4 sec   (5527 perm/sec)   p_kst 1.060000e-02   p_cons 6.608000e-01   p_joint 3.015000e-02

Joint ci ratio: 1.449437e-01	ci left: 2.207259e-02	ci right 2.555380e-02	k: 713	n:30000
Cons ci ratio: 1.624357e-02	ci left: 6.546076e-01	ci right 6.653614e-01	k: 19800	n:30000
KS ci ratio: 2.053554e-01	ci left: 1.076700e-02	ci right 1.326218e-02	k: 359	n:30000
NPR3   30000 perm   6 sec   (5259 perm/sec)   p_kst 1.196667e-02   p_cons 6.600000e-01   p_joint 2.376667e-02

Joint ci ratio: 9.905703e-02	ci left: 3.580575e-02	ci right 3.956175e-02	k: 1506	n:40000
Cons ci ratio: 1.371792e-02	ci left: 6.665715e-01	ci right 6.758037e-01	k: 26848	n:40000
KS ci ratio: 1.707803e-01	ci left: 1.188895e-02	ci right 1.413257e-02	k: 519	n:40000
NPR3   40000 perm   8 sec   (5091 perm/sec)   p_kst 1.297500e-02   p_cons 6.712000e-01   p_joint 3.765000e-02

Joint ci ratio: 1.009389e-01	ci left: 2.780014e-02	ci right 3.077485e-02	k: 1463	n:50000
Cons ci ratio: 1.232424e-02	ci left: 6.650963e-01	ci right 6.733640e-01	k: 33462	n:50000
KS ci ratio: 1.550634e-01	ci left: 1.164070e-02	ci right 1.361649e-02	k: 630	n:50000
NPR3   50000 perm   10 sec   (4848 perm/sec)   p_kst 1.260000e-02   p_cons 6.692400e-01   p_joint 2.926000e-02

Joint ci ratio: 8.780527e-02	ci left: 3.073657e-02	ci right 3.357559e-02	k: 1928	n:60000
Cons ci ratio: 1.122439e-02	ci left: 6.664885e-01	ci right 6.740283e-01	k: 40216	n:60000
KS ci ratio: 1.428192e-01	ci left: 1.151376e-02	ci right 1.330053e-02	k: 743	n:60000
NPR3   60000 perm   13 sec   (4751 perm/sec)   p_kst 1.238333e-02   p_cons 6.702667e-01   p_joint 3.213333e-02

Joint ci ratio: 9.816783e-02	ci left: 2.117702e-02	ci right 2.337711e-02	k: 1558	n:70000
Cons ci ratio: 1.040713e-02	ci left: 6.661158e-01	ci right 6.730987e-01	k: 46873	n:70000
KS ci ratio: 1.323022e-01	ci left: 1.156569e-02	ci right 1.321795e-02	k: 866	n:70000
NPR3   70000 perm   15 sec   (4662 perm/sec)   p_kst 1.237143e-02   p_cons 6.696143e-01   p_joint 2.225714e-02

Joint ci ratio: 9.419945e-02	ci left: 2.018852e-02	ci right 2.219642e-02	k: 1694	n:80000
Cons ci ratio: 9.745478e-03	ci left: 6.658647e-01	ci right 6.723981e-01	k: 53531	n:80000
KS ci ratio: 1.237485e-01	ci left: 1.162040e-02	ci right 1.316527e-02	k: 990	n:80000
NPR3   80000 perm   17 sec   (4577 perm/sec)   p_kst 1.237500e-02   p_cons 6.691375e-01   p_joint 2.117500e-02

Joint ci ratio: 8.943405e-02	ci left: 1.996447e-02	ci right 2.184437e-02	k: 1880	n:90000
Cons ci ratio: 9.173008e-03	ci left: 6.667834e-01	ci right 6.729390e-01	k: 60288	n:90000
KS ci ratio: 1.168239e-01	ci left: 1.163326e-02	ci right 1.308732e-02	k: 1111	n:90000
NPR3   90000 perm   20 sec   (4498 perm/sec)   p_kst 1.234444e-02   p_cons 6.698667e-01   p_joint 2.088889e-02

Joint ci ratio: 7.251825e-02	ci left: 2.735949e-02	ci right 2.942799e-02	k: 2838	n:100000
Cons ci ratio: 8.689042e-03	ci left: 6.676169e-01	ci right 6.734532e-01	k: 67054	n:100000
KS ci ratio: 1.104025e-01	ci left: 1.176220e-02	ci right 1.314630e-02	k: 1244	n:100000
NPR3   100000 perm   23 sec   (4426 perm/sec)   p_kst 1.244000e-02   p_cons 6.705400e-01   p_joint 2.838000e-02

Joint ci ratio: 6.918795e-02	ci left: 2.737263e-02	ci right 2.934325e-02	k: 3118	n:110000
Cons ci ratio: 8.289012e-03	ci left: 6.675220e-01	ci right 6.730872e-01	k: 73734	n:110000
KS ci ratio: 1.050513e-01	ci left: 1.184292e-02	ci right 1.316479e-02	k: 1374	n:110000
NPR3   110000 perm   25 sec   (4356 perm/sec)   p_kst 1.249091e-02   p_cons 6.703091e-01   p_joint 2.834545e-02

Joint ci ratio: 6.876443e-02	ci left: 2.545923e-02	ci right 2.728042e-02	k: 3163	n:120000
Cons ci ratio: 7.940632e-03	ci left: 6.673898e-01	ci right 6.727187e-01	k: 80407	n:120000
KS ci ratio: 1.011956e-01	ci left: 1.172464e-02	ci right 1.298242e-02	k: 1481	n:120000
NPR3   120000 perm   28 sec   (4284 perm/sec)   p_kst 1.234167e-02   p_cons 6.700583e-01   p_joint 2.635833e-02

Joint ci ratio: 6.645272e-02	ci left: 2.520223e-02	ci right 2.694208e-02	k: 3388	n:130000
Cons ci ratio: 7.624283e-03	ci left: 6.677754e-01	ci right 6.728939e-01	k: 87144	n:130000
KS ci ratio: 9.736389e-02	ci left: 1.171540e-02	ci right 1.292188e-02	k: 1600	n:130000
NPR3   130000 perm   31 sec   (4216 perm/sec)   p_kst 1.230769e-02   p_cons 6.703385e-01   p_joint 2.606154e-02

Outputting figure to mutsig2_images.part000000000116/NPR3.3_1655_130000_0.012308_0.67034_0.026062.png
                gene_name: NPR3
               theta_stop: 0.097 
                    nperm: 130000 
                     p_ks: 0.012 
        ci_ks_bounds_left: 0.012 
       ci_ks_bounds_right: 0.013 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.026 
     ci_joint_bounds_left: 0.025 
    ci_joint_bounds_right: 0.027 

Current progress: 76 percent done.
NPSR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.000510e-02	ci left: 2.302732e-01	ci right 2.470793e-01	k: 2386	n:10000
Cons ci ratio: 1.374621e-01	ci left: 7.000876e-02	ci right 8.044030e-02	k: 751	n:10000
KS ci ratio: 4.033941e-02	ci left: 4.757596e-01	ci right 4.954488e-01	k: 4856	n:10000
NPSR1   10000 perm   2 sec   (6552 perm/sec)   p_kst 4.856000e-01   p_cons 7.510000e-02   p_joint 2.386000e-01

Joint ci ratio: 4.419619e-02	ci left: 2.760191e-01	ci right 2.885442e-01	k: 5645	n:20000
Cons ci ratio: 9.102956e-02	ci left: 8.097465e-02	ci right 8.874654e-02	k: 1696	n:20000
KS ci ratio: 2.849796e-02	ci left: 4.791506e-01	ci right 4.930534e-01	k: 9722	n:20000
NPSR1   20000 perm   3 sec   (5770 perm/sec)   p_kst 4.861000e-01   p_cons 8.480000e-02   p_joint 2.822500e-01

Outputting figure to mutsig2_images.part000000000116/NPSR1.3_1265_20000_0.4861_0.0848_0.28225.png
                gene_name: NPSR1
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.085 
      ci_cons_bounds_left: 0.081 
     ci_cons_bounds_right: 0.089 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 78 percent done.
NPY1R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.183805e-02	ci left: 4.575817e-01	ci right 4.772373e-01	k: 4674	n:10000
Cons ci ratio: 9.162892e-02	ci left: 1.475656e-01	ci right 1.618362e-01	k: 1546	n:10000
KS ci ratio: 1.469696e-02	ci left: 8.701983e-01	ci right 8.831813e-01	k: 8768	n:10000
NPY1R   10000 perm   2 sec   (6512 perm/sec)   p_kst 8.768000e-01   p_cons 1.546000e-01   p_joint 4.674000e-01

Outputting figure to mutsig2_images.part000000000116/NPY1R.3_1163_10000_0.8768_0.1546_0.4674.png
                gene_name: NPY1R
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 80 percent done.
NOL8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.017051e-02	ci left: 9.320594e-01	ci right 9.416842e-01	k: 9370	n:10000
KS ci ratio: 3.446865e-02	ci left: 5.541131e-01	ci right 5.736497e-01	k: 5639	n:10000
NOL8   10000 perm   2 sec   (5703 perm/sec)   p_kst 5.639000e-01   p_cons 9.370000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000116/NOL8.2_3568_10000_0.5639_0.937_1.png
                gene_name: NOL8
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
NOM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.645643e-02	ci left: 8.430535e-01	ci right 8.571419e-01	k: 8502	n:10000
Cons ci ratio: 8.722590e-03	ci left: 9.485639e-01	ci right 9.569698e-01	k: 9529	n:10000
KS ci ratio: 6.496620e-02	ci left: 2.581502e-01	ci right 2.755858e-01	k: 2668	n:10000
NOM1   10000 perm   2 sec   (6135 perm/sec)   p_kst 2.668000e-01   p_cons 9.529000e-01   p_joint 8.502000e-01

Outputting figure to mutsig2_images.part000000000116/NOM1.2_2627_10000_0.2668_0.9529_0.8502.png
                gene_name: NOM1
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 84 percent done.
NOP14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.356197e-02	ci left: 3.393548e-01	ci right 3.581334e-01	k: 3487	n:10000
Cons ci ratio: 3.954049e-02	ci left: 4.857530e-01	ci right 5.054495e-01	k: 4956	n:10000
KS ci ratio: 1.137775e-01	ci left: 1.000319e-01	ci right 1.121987e-01	k: 1060	n:10000
NOP14   10000 perm   2 sec   (6270 perm/sec)   p_kst 1.060000e-01   p_cons 4.956000e-01   p_joint 3.487000e-01

Joint ci ratio: 3.461529e-02	ci left: 3.838795e-01	ci right 3.974523e-01	k: 7813	n:20000
Cons ci ratio: 2.883081e-02	ci left: 4.733541e-01	ci right 4.872516e-01	k: 9606	n:20000
KS ci ratio: 7.890317e-02	ci left: 1.054990e-01	ci right 1.142147e-01	k: 2196	n:20000
NOP14   20000 perm   4 sec   (5575 perm/sec)   p_kst 1.098000e-01   p_cons 4.803000e-01   p_joint 3.906500e-01

Outputting figure to mutsig2_images.part000000000116/NOP14.2_2646_20000_0.1098_0.4803_0.39065.png
                gene_name: NOP14
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 86 percent done.
NOS1AP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.457014e-02	ci left: 2.605249e-01	ci right 2.780097e-01	k: 2692	n:10000
Cons ci ratio: 8.192190e-02	ci left: 1.786127e-01	ci right 1.939705e-01	k: 1862	n:10000
KS ci ratio: 2.961459e-02	ci left: 6.270843e-01	ci right 6.460361e-01	k: 6366	n:10000
NOS1AP   10000 perm   1 sec   (6833 perm/sec)   p_kst 6.366000e-01   p_cons 1.862000e-01   p_joint 2.692000e-01

Outputting figure to mutsig2_images.part000000000116/NOS1AP.2_1615_10000_0.6366_0.1862_0.2692.png
                gene_name: NOS1AP
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 88 percent done.
NOS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.265054e-01	ci left: 8.203252e-02	ci right 9.320908e-02	k: 875	n:10000
Cons ci ratio: 2.870972e-01	ci left: 1.567108e-02	ci right 2.101476e-02	k: 182	n:10000
KS ci ratio: 9.986532e-02	ci left: 1.267935e-01	ci right 1.402208e-01	k: 1334	n:10000
NOS3   10000 perm   2 sec   (5487 perm/sec)   p_kst 1.334000e-01   p_cons 1.820000e-02   p_joint 8.750000e-02

Joint ci ratio: 2.038660e-01	ci left: 1.629772e-02	ci right 2.004424e-02	k: 362	n:20000
Cons ci ratio: 2.079889e-01	ci left: 1.563326e-02	ci right 1.930895e-02	k: 348	n:20000
KS ci ratio: 7.034327e-02	ci left: 1.296521e-01	ci right 1.391545e-01	k: 2687	n:20000
NOS3   20000 perm   4 sec   (4922 perm/sec)   p_kst 1.343500e-01   p_cons 1.740000e-02   p_joint 1.810000e-02

Joint ci ratio: 1.674783e-01	ci left: 1.642981e-02	ci right 1.946457e-02	k: 537	n:30000
Cons ci ratio: 1.702378e-01	ci left: 1.588671e-02	ci right 1.887447e-02	k: 520	n:30000
KS ci ratio: 5.772515e-02	ci left: 1.293740e-01	ci right 1.370972e-01	k: 3996	n:30000
NOS3   30000 perm   6 sec   (4708 perm/sec)   p_kst 1.332000e-01   p_cons 1.733333e-02   p_joint 1.790000e-02

Joint ci ratio: 1.464329e-01	ci left: 1.630991e-02	ci right 1.891080e-02	k: 703	n:40000
Cons ci ratio: 1.483756e-01	ci left: 1.587624e-02	ci right 1.844454e-02	k: 685	n:40000
KS ci ratio: 5.038130e-02	ci left: 1.281283e-01	ci right 1.347753e-01	k: 5257	n:40000
NOS3   40000 perm   9 sec   (4582 perm/sec)   p_kst 1.314250e-01   p_cons 1.712500e-02   p_joint 1.757500e-02

Joint ci ratio: 1.821264e-01	ci left: 8.343543e-03	ci right 1.003418e-02	k: 458	n:50000
Cons ci ratio: 1.334657e-01	ci left: 1.582699e-02	ci right 1.810959e-02	k: 847	n:50000
KS ci ratio: 4.503685e-02	ci left: 1.286087e-01	ci right 1.345541e-01	k: 6578	n:50000
NOS3   50000 perm   11 sec   (4474 perm/sec)   p_kst 1.315600e-01   p_cons 1.694000e-02   p_joint 9.160000e-03

Joint ci ratio: 1.682424e-01	ci left: 8.211909e-03	ci right 9.736156e-03	k: 537	n:60000
Cons ci ratio: 1.219958e-01	ci left: 1.588371e-02	ci right 1.796339e-02	k: 1014	n:60000
KS ci ratio: 4.096007e-02	ci left: 1.297141e-01	ci right 1.351548e-01	k: 7945	n:60000
NOS3   60000 perm   14 sec   (4377 perm/sec)   p_kst 1.324167e-01   p_cons 1.690000e-02   p_joint 8.950000e-03

Joint ci ratio: 1.555957e-01	ci left: 8.286188e-03	ci right 9.697821e-03	k: 628	n:70000
Cons ci ratio: 1.126162e-01	ci left: 1.605528e-02	ci right 1.798505e-02	k: 1190	n:70000
KS ci ratio: 3.791540e-02	ci left: 1.299541e-01	ci right 1.349907e-01	k: 9272	n:70000
NOS3   70000 perm   16 sec   (4291 perm/sec)   p_kst 1.324571e-01   p_cons 1.700000e-02   p_joint 8.971429e-03

Joint ci ratio: 1.440237e-01	ci left: 8.513843e-03	ci right 9.847116e-03	k: 733	n:80000
Cons ci ratio: 1.047240e-01	ci left: 1.631034e-02	ci right 1.812491e-02	k: 1376	n:80000
KS ci ratio: 3.553181e-02	ci left: 1.296988e-01	ci right 1.344030e-01	k: 10563	n:80000
NOS3   80000 perm   19 sec   (4210 perm/sec)   p_kst 1.320375e-01   p_cons 1.720000e-02   p_joint 9.162500e-03

Joint ci ratio: 1.363505e-01	ci left: 8.479185e-03	ci right 9.730541e-03	k: 818	n:90000
Cons ci ratio: 9.906474e-02	ci left: 1.625220e-02	ci right 1.795690e-02	k: 1538	n:90000
KS ci ratio: 3.351191e-02	ci left: 1.297508e-01	ci right 1.341841e-01	k: 11876	n:90000
NOS3   90000 perm   22 sec   (4134 perm/sec)   p_kst 1.319556e-01   p_cons 1.708889e-02   p_joint 9.088889e-03

Joint ci ratio: 2.201674e-01	ci left: 2.812169e-03	ci right 3.517136e-03	k: 315	n:100000
Cons ci ratio: 1.666882e-01	ci left: 5.041419e-03	ci right 5.967618e-03	k: 549	n:100000
KS ci ratio: 3.186689e-02	ci left: 1.293317e-01	ci right 1.335297e-01	k: 13142	n:100000
NOS3   100000 perm   25 sec   (4074 perm/sec)   p_kst 1.314200e-01   p_cons 5.490000e-03   p_joint 3.150000e-03

Joint ci ratio: 2.122621e-01	ci left: 2.762879e-03	ci right 3.427384e-03	k: 339	n:110000
Cons ci ratio: 1.608128e-01	ci left: 4.940543e-03	ci right 5.813121e-03	k: 590	n:110000
KS ci ratio: 3.036492e-02	ci left: 1.295713e-01	ci right 1.335754e-01	k: 14472	n:110000
NOS3   110000 perm   27 sec   (4015 perm/sec)   p_kst 1.315636e-01   p_cons 5.363636e-03   p_joint 3.081818e-03

Joint ci ratio: 1.579217e-01	ci left: 4.704806e-03	ci right 5.519392e-03	k: 612	n:120000
Cons ci ratio: 1.539338e-01	ci left: 4.961118e-03	ci right 5.796392e-03	k: 644	n:120000
KS ci ratio: 2.903910e-02	ci left: 1.299157e-01	ci right 1.337521e-01	k: 15819	n:120000
NOS3   120000 perm   30 sec   (3954 perm/sec)   p_kst 1.318250e-01   p_cons 5.366667e-03   p_joint 5.100000e-03

Joint ci ratio: 1.511649e-01	ci left: 4.757023e-03	ci right 5.542222e-03	k: 668	n:130000
Cons ci ratio: 1.473394e-01	ci left: 5.016249e-03	ci right 5.821439e-03	k: 703	n:130000
KS ci ratio: 2.787864e-02	ci left: 1.301644e-01	ci right 1.338521e-01	k: 17160	n:130000
NOS3   130000 perm   33 sec   (3895 perm/sec)   p_kst 1.320000e-01   p_cons 5.407692e-03   p_joint 5.138462e-03

Joint ci ratio: 1.456115e-01	ci left: 4.774880e-03	ci right 5.531553e-03	k: 720	n:140000
Cons ci ratio: 1.415258e-01	ci left: 5.064157e-03	ci right 5.842256e-03	k: 762	n:140000
KS ci ratio: 2.689143e-02	ci left: 1.300037e-01	ci right 1.335544e-01	k: 18448	n:140000
NOS3   140000 perm   36 sec   (3840 perm/sec)   p_kst 1.317714e-01   p_cons 5.442857e-03   p_joint 5.142857e-03

Joint ci ratio: 1.409955e-01	ci left: 4.765080e-03	ci right 5.494250e-03	k: 768	n:150000
Cons ci ratio: 1.364336e-01	ci left: 5.099777e-03	ci right 5.852866e-03	k: 820	n:150000
KS ci ratio: 2.597564e-02	ci left: 1.300986e-01	ci right 1.335290e-01	k: 19771	n:150000
NOS3   150000 perm   40 sec   (3785 perm/sec)   p_kst 1.318067e-01   p_cons 5.466667e-03   p_joint 5.120000e-03

Joint ci ratio: 1.357936e-01	ci left: 4.829292e-03	ci right 5.538820e-03	k: 828	n:160000
Cons ci ratio: 1.316285e-01	ci left: 5.149518e-03	ci right 5.881076e-03	k: 881	n:160000
KS ci ratio: 2.509952e-02	ci left: 1.306185e-01	ci right 1.339448e-01	k: 21164	n:160000
NOS3   160000 perm   43 sec   (3730 perm/sec)   p_kst 1.322750e-01   p_cons 5.506250e-03   p_joint 5.175000e-03

Joint ci ratio: 1.330214e-01	ci left: 4.744161e-03	ci right 5.425826e-03	k: 863	n:170000
Cons ci ratio: 1.286772e-01	ci left: 5.079917e-03	ci right 5.784170e-03	k: 922	n:170000
KS ci ratio: 2.435999e-02	ci left: 1.305757e-01	ci right 1.338016e-01	k: 22471	n:170000
NOS3   170000 perm   46 sec   (3677 perm/sec)   p_kst 1.321824e-01   p_cons 5.423529e-03   p_joint 5.076471e-03

Joint ci ratio: 1.284174e-01	ci left: 4.819165e-03	ci right 5.485814e-03	k: 926	n:180000
Cons ci ratio: 1.246227e-01	ci left: 5.125860e-03	ci right 5.812437e-03	k: 983	n:180000
KS ci ratio: 2.367302e-02	ci left: 1.306274e-01	ci right 1.337623e-01	k: 23794	n:180000
NOS3   180000 perm   50 sec   (3628 perm/sec)   p_kst 1.321889e-01   p_cons 5.461111e-03   p_joint 5.144444e-03

Joint ci ratio: 1.433355e-01	ci left: 3.639929e-03	ci right 4.206951e-03	k: 744	n:190000
Cons ci ratio: 1.211620e-01	ci left: 5.146860e-03	ci right 5.815733e-03	k: 1040	n:190000
KS ci ratio: 2.302945e-02	ci left: 1.307900e-01	ci right 1.338423e-01	k: 25139	n:190000
NOS3   190000 perm   53 sec   (3580 perm/sec)   p_kst 1.323105e-01   p_cons 5.473684e-03   p_joint 3.915789e-03

Joint ci ratio: 1.404462e-01	ci left: 3.607426e-03	ci right 4.157108e-03	k: 775	n:200000
Cons ci ratio: 1.185185e-01	ci left: 5.117467e-03	ci right 5.766994e-03	k: 1087	n:200000
KS ci ratio: 2.246206e-02	ci left: 1.306687e-01	ci right 1.336420e-01	k: 26430	n:200000
NOS3   200000 perm   57 sec   (3532 perm/sec)   p_kst 1.321500e-01   p_cons 5.435000e-03   p_joint 3.875000e-03

Joint ci ratio: 1.364575e-01	ci left: 3.647109e-03	ci right 4.185774e-03	k: 821	n:210000
Cons ci ratio: 1.153277e-01	ci left: 5.155766e-03	ci right 5.791335e-03	k: 1148	n:210000
KS ci ratio: 2.194970e-02	ci left: 1.304033e-01	ci right 1.333021e-01	k: 27688	n:210000
NOS3   210000 perm   60 sec   (3486 perm/sec)   p_kst 1.318476e-01   p_cons 5.466667e-03   p_joint 3.909524e-03

Joint ci ratio: 1.338001e-01	ci left: 3.626258e-03	ci right 4.150583e-03	k: 854	n:220000
Cons ci ratio: 1.132315e-01	ci left: 5.111273e-03	ci right 5.729140e-03	k: 1191	n:220000
KS ci ratio: 2.144271e-02	ci left: 1.304615e-01	ci right 1.332937e-01	k: 29012	n:220000
NOS3   220000 perm   64 sec   (3440 perm/sec)   p_kst 1.318727e-01   p_cons 5.413636e-03   p_joint 3.881818e-03

Joint ci ratio: 1.277994e-01	ci left: 3.813478e-03	ci right 4.338271e-03	k: 936	n:230000
Cons ci ratio: 1.106169e-01	ci left: 5.129935e-03	ci right 5.734805e-03	k: 1248	n:230000
KS ci ratio: 2.102642e-02	ci left: 1.298963e-01	ci right 1.326608e-01	k: 30193	n:230000
NOS3   230000 perm   68 sec   (3384 perm/sec)   p_kst 1.312739e-01   p_cons 5.426087e-03   p_joint 4.069565e-03

Joint ci ratio: 1.247083e-01	ci left: 3.844236e-03	ci right 4.359520e-03	k: 983	n:240000
Cons ci ratio: 1.077614e-01	ci left: 5.187739e-03	ci right 5.782633e-03	k: 1315	n:240000
KS ci ratio: 2.058363e-02	ci left: 1.299263e-01	ci right 1.326326e-01	k: 31506	n:240000
NOS3   240000 perm   72 sec   (3334 perm/sec)   p_kst 1.312750e-01   p_cons 5.479167e-03   p_joint 4.095833e-03

Joint ci ratio: 1.251664e-01	ci left: 3.663320e-03	ci right 4.156291e-03	k: 976	n:250000
Cons ci ratio: 1.057329e-01	ci left: 5.178781e-03	ci right 5.760774e-03	k: 1366	n:250000
KS ci ratio: 2.016981e-02	ci left: 1.299306e-01	ci right 1.325819e-01	k: 32813	n:250000
NOS3   250000 perm   76 sec   (3294 perm/sec)   p_kst 1.312520e-01   p_cons 5.464000e-03   p_joint 3.904000e-03

Joint ci ratio: 1.200991e-01	ci left: 3.835613e-03	ci right 4.329389e-03	k: 1060	n:260000
Cons ci ratio: 1.035947e-01	ci left: 5.193091e-03	ci right 5.764171e-03	k: 1423	n:260000
KS ci ratio: 1.977598e-02	ci left: 1.299811e-01	ci right 1.325810e-01	k: 34132	n:260000
NOS3   260000 perm   80 sec   (3252 perm/sec)   p_kst 1.312769e-01   p_cons 5.473077e-03   p_joint 4.076923e-03

Joint ci ratio: 1.178974e-01	ci left: 3.837292e-03	ci right 4.321597e-03	k: 1100	n:270000
Cons ci ratio: 1.014779e-01	ci left: 5.217281e-03	ci right 5.778599e-03	k: 1483	n:270000
KS ci ratio: 1.941980e-02	ci left: 1.298475e-01	ci right 1.323975e-01	k: 35402	n:270000
NOS3   270000 perm   84 sec   (3215 perm/sec)   p_kst 1.311185e-01   p_cons 5.492593e-03   p_joint 4.074074e-03

Joint ci ratio: 1.187207e-01	ci left: 3.648238e-03	ci right 4.112124e-03	k: 1085	n:280000
Cons ci ratio: 9.997526e-02	ci left: 5.187611e-03	ci right 5.736987e-03	k: 1528	n:280000
KS ci ratio: 1.906725e-02	ci left: 1.299017e-01	ci right 1.324059e-01	k: 36722	n:280000
NOS3   280000 perm   88 sec   (3179 perm/sec)   p_kst 1.311500e-01   p_cons 5.457143e-03   p_joint 3.875000e-03

Joint ci ratio: 1.165927e-01	ci left: 3.656309e-03	ci right 4.112314e-03	k: 1125	n:290000
Cons ci ratio: 9.809971e-02	ci left: 5.207140e-03	ci right 5.747643e-03	k: 1587	n:290000
KS ci ratio: 1.873719e-02	ci left: 1.299045e-01	ci right 1.323650e-01	k: 38028	n:290000
NOS3   290000 perm   92 sec   (3144 perm/sec)   p_kst 1.311310e-01   p_cons 5.472414e-03   p_joint 3.879310e-03

Joint ci ratio: 1.148226e-01	ci left: 3.647722e-03	ci right 4.095280e-03	k: 1160	n:300000
Cons ci ratio: 9.626716e-02	ci left: 5.231963e-03	ci right 5.764325e-03	k: 1648	n:300000
KS ci ratio: 1.842423e-02	ci left: 1.299008e-01	ci right 1.323197e-01	k: 39332	n:300000
NOS3   300000 perm   96 sec   (3111 perm/sec)   p_kst 1.311067e-01   p_cons 5.493333e-03   p_joint 3.866667e-03

Joint ci ratio: 9.618782e-02	ci left: 5.072614e-03	ci right 5.588313e-03	k: 1651	n:310000
Cons ci ratio: 9.475674e-02	ci left: 5.230073e-03	ci right 5.753430e-03	k: 1701	n:310000
KS ci ratio: 1.812030e-02	ci left: 1.299748e-01	ci right 1.323547e-01	k: 40660	n:310000
NOS3   310000 perm   101 sec   (3078 perm/sec)   p_kst 1.311613e-01   p_cons 5.487097e-03   p_joint 5.325806e-03

Outputting figure to mutsig2_images.part000000000116/NOS3.2_3998_310000_0.13116_0.0054871_0.0053258.png
                gene_name: NOS3
               theta_stop: 0.096 
                    nperm: 310000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.0055 
      ci_cons_bounds_left: 0.0052 
     ci_cons_bounds_right: 0.0058 
                  p_joint: 0.0053 
     ci_joint_bounds_left: 0.0051 
    ci_joint_bounds_right: 0.0056 

Current progress: 90 percent done.
NOX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.969102e-02	ci left: 4.838540e-01	ci right 5.035497e-01	k: 4937	n:10000
KS ci ratio: 9.066030e-02	ci left: 1.503128e-01	ci right 1.646873e-01	k: 1574	n:10000
NOX1   10000 perm   1 sec   (6698 perm/sec)   p_kst 1.574000e-01   p_cons 4.937000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000116/NOX1.2_1747_10000_0.1574_0.4937_1.png
                gene_name: NOX1
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
NPC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.926339e-02	ci left: 7.976037e-01	ci right 8.132180e-01	k: 8055	n:10000
KS ci ratio: 2.732877e-02	ci left: 6.636054e-01	ci right 6.820938e-01	k: 6729	n:10000
NPC1   10000 perm   2 sec   (5697 perm/sec)   p_kst 6.729000e-01   p_cons 8.055000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000116/NPC1.2_3937_10000_0.6729_0.8055_1.png
                gene_name: NPC1
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
NPL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.171582e-02	ci left: 3.553558e-01	ci right 3.743230e-01	k: 3648	n:10000
Cons ci ratio: 3.590659e-02	ci left: 5.338761e-01	ci right 5.534984e-01	k: 5437	n:10000
KS ci ratio: 1.167540e-01	ci left: 9.535564e-02	ci right 1.072778e-01	k: 1012	n:10000
NPL   10000 perm   1 sec   (6853 perm/sec)   p_kst 1.012000e-01   p_cons 5.437000e-01   p_joint 3.648000e-01

Joint ci ratio: 2.586330e-02	ci left: 5.276074e-01	ci right 5.414825e-01	k: 10691	n:20000
Cons ci ratio: 2.528676e-02	ci left: 5.388183e-01	ci right 5.526684e-01	k: 10915	n:20000
KS ci ratio: 8.235578e-02	ci left: 9.754417e-02	ci right 1.059720e-01	k: 2034	n:20000
NPL   20000 perm   4 sec   (5682 perm/sec)   p_kst 1.017000e-01   p_cons 5.457500e-01   p_joint 5.345500e-01

Outputting figure to mutsig2_images.part000000000116/NPL.2_1007_20000_0.1017_0.54575_0.53455.png
                gene_name: NPL
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.098 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.54 

Current progress: 96 percent done.
NPLOC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.107303e-02	ci left: 4.667689e-01	ci right 4.864447e-01	k: 4766	n:10000
KS ci ratio: 8.427585e-03	ci left: 9.516910e-01	ci right 9.598408e-01	k: 9559	n:10000
NPLOC4   10000 perm   2 sec   (6371 perm/sec)   p_kst 9.559000e-01   p_cons 4.766000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000116/NPLOC4.2_1895_10000_0.9559_0.4766_1.png
                gene_name: NPLOC4
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
NPS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.849801e-02	ci left: 2.381767e-01	ci right 2.551711e-01	k: 2466	n:10000
Cons ci ratio: 5.337388e-02	ci left: 3.409444e-01	ci right 3.597428e-01	k: 3503	n:10000
KS ci ratio: 1.301200e-01	ci left: 7.776183e-02	ci right 8.868240e-02	k: 831	n:10000
NPS   10000 perm   1 sec   (7419 perm/sec)   p_kst 8.310000e-02   p_cons 3.503000e-01   p_joint 2.466000e-01

Joint ci ratio: 3.351739e-02	ci left: 3.992828e-01	ci right 4.129445e-01	k: 8122	n:20000
Cons ci ratio: 3.770782e-02	ci left: 3.441335e-01	ci right 3.574099e-01	k: 7015	n:20000
KS ci ratio: 9.268048e-02	ci left: 7.828247e-02	ci right 8.593954e-02	k: 1641	n:20000
NPS   20000 perm   3 sec   (6448 perm/sec)   p_kst 8.205000e-02   p_cons 3.507500e-01   p_joint 4.061000e-01

Outputting figure to mutsig2_images.part000000000116/NPS.2_282_20000_0.08205_0.35075_0.4061.png
                gene_name: NPS
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.082 
        ci_ks_bounds_left: 0.078 
       ci_ks_bounds_right: 0.086 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.41 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000116
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 116 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1548>
Subject: Job 8004319: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1548>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000117> was used as the working directory.
Started at Sun Nov 11 15:10:11 2012
Results reported at Sun Nov 11 15:21:00 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000117.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000117.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 117  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000117.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    782.51 sec.
    Max Memory :      4743 MB
    Max Swap   :      7274 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
117
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 117
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 117: processing genes 10496 - 10585
Calculating significance of each gene.
Using projection method.
10496	NR0B2	5.833677e-01
10497	NR1D1	1
10498	NR1D2	7.724094e-01
10499	NR1H2	7.374086e-01
10500	NR1H3	4.396426e-01
10501	NR1H4	2.635438e-03
10502	NR1I2	8.373093e-01
10503	NR1I3	6.420001e-01
10504	NR2C1	8.804214e-01
10505	NR2C2	6.078537e-01
10506	NR2C2AP	1
10507	NR2E1	3.293096e-02
10508	NR2E3	4.300471e-01
10509	NR2F1	1
10510	NR2F2	1
10511	NR2F6	3.747029e-01
10512	NR3C1	9.583599e-01
10513	NR3C2	1
10514	NR4A1	1.687140e-01
10515	NR4A2	3.869174e-01
10516	NR4A3	2.862269e-01
10517	NR5A1	1
10518	NR5A2	7.434474e-02
10519	NR6A1	1
10520	NRAP	2.025690e-01
10521	NRARP	1.792083e-01
10522	NRAS	5.335407e-01
10523	NRBF2	6.239663e-01
10524	NRBP1	1.877426e-01
10525	NRBP2	1
10526	NRCAM	9.928256e-01
10527	NRD1	8.760308e-01
10528	NRF1	1
10529	NRG1	9.748031e-01
10530	NRG2	2.567057e-01
10531	NRG3	1.223034e-02
10532	NRG4	1
10533	NRGN	1
10534	NRIP1	1
10535	NRIP2	1
10536	NRIP3	6.415792e-02
10537	NRK	7.061703e-01
10538	NRL	4.458809e-01
10539	NRM	1
10540	NRN1	4.243749e-02
10541	NRN1L	2.852068e-01
10542	NRP1	3.771735e-01
10543	NRP2	4.288236e-01
10544	NRSN1	5.931312e-02
10545	NRSN2	1.093024e-01
10546	NRTN	1
10547	NRXN1	8.905240e-01
10548	NRXN2	9.894395e-01
10549	NRXN3	5.224135e-01
10550	NSA2	1
10551	NSD1	6.628535e-01
10552	NSDHL	7.279167e-01
10553	NSF	1
10554	NSFL1C	5.151757e-01
10555	NSL1	1
10556	NSMAF	1
10557	NSMCE1	2.516045e-01
10558	NSMCE2	4.452274e-01
10559	NSMCE4A	1
10560	NSUN2	1
10561	NSUN3	1.568791e-01
10562	NSUN4	6.628660e-01
10563	NSUN5	1
10564	NSUN6	3.480807e-01
10565	NSUN7	1
10566	NT5C	1
10567	NT5C1A	1
10568	NT5C1B	1
10569	NT5C2	4.382401e-01
10570	NT5C3	6.260729e-02
10571	NT5C3L	1
10572	NT5DC1	8.644883e-01
10573	NT5DC2	1
10574	NT5DC3	6.841946e-02
10575	NT5E	1
10576	NT5M	1
10577	NTAN1	1
10578	NTF3	1.149185e-01
10579	NTF4	1
10580	NTHL1	3.696369e-01
10581	NTM	1.844205e-02
10582	NTN1	2.223583e-01
10583	NTN3	7.931008e-01
10584	NTN4	5.408436e-01
10585	NTN5	1.908193e-01
Done

Running MutSig 2:
Scatter job 117: processing genes 10496 - 10585
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
NRXN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.747133e-02	ci left: 8.268655e-01	ci right 8.415392e-01	k: 8343	n:10000
Cons ci ratio: 5.922919e-02	ci left: 2.954883e-01	ci right 3.136257e-01	k: 3045	n:10000
KS ci ratio: 8.144362e-03	ci left: 9.546142e-01	ci right 9.625159e-01	k: 9587	n:10000
NRXN1   10000 perm   3 sec   (3088 perm/sec)   p_kst 9.587000e-01   p_cons 3.045000e-01   p_joint 8.343000e-01

Outputting figure to mutsig2_images.part000000000117/NRXN1.22_4999_10000_0.9587_0.3045_0.8343.png
                gene_name: NRXN1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 2 percent done.
NRK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.796730e-02	ci left: 3.046112e-01	ci right 3.228974e-01	k: 3137	n:10000
Cons ci ratio: 5.075896e-02	ci left: 3.640070e-01	ci right 3.830667e-01	k: 3735	n:10000
KS ci ratio: 6.228728e-02	ci left: 2.747796e-01	ci right 2.925466e-01	k: 2836	n:10000
NRK   10000 perm   3 sec   (3313 perm/sec)   p_kst 2.836000e-01   p_cons 3.735000e-01   p_joint 3.137000e-01

Outputting figure to mutsig2_images.part000000000117/NRK.19_4865_10000_0.2836_0.3735_0.3137.png
                gene_name: NRK
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 4 percent done.
NRAP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.845652e-02	ci left: 4.996504e-01	ci right 5.193441e-01	k: 5095	n:10000
Cons ci ratio: 4.803081e-02	ci left: 3.900798e-01	ci right 4.093787e-01	k: 3997	n:10000
KS ci ratio: 5.016777e-02	ci left: 3.694779e-01	ci right 3.885927e-01	k: 3790	n:10000
NRAP   10000 perm   3 sec   (3471 perm/sec)   p_kst 3.790000e-01   p_cons 3.997000e-01   p_joint 5.095000e-01

Outputting figure to mutsig2_images.part000000000117/NRAP.12_5361_10000_0.379_0.3997_0.5095.png
                gene_name: NRAP
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 6 percent done.
NRXN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.052170e-01	ci left: 3.157898e-02	ci right 3.889501e-02	k: 351	n:10000
Cons ci ratio: 1.446619e-01	ci left: 6.343206e-02	ci right 7.342113e-02	k: 683	n:10000
KS ci ratio: 2.348632e-01	ci left: 2.391158e-02	ci right 3.036784e-02	k: 270	n:10000
NRXN2   10000 perm   3 sec   (3645 perm/sec)   p_kst 2.700000e-02   p_cons 6.830000e-02   p_joint 3.510000e-02

Joint ci ratio: 1.615388e-01	ci left: 2.628568e-02	ci right 3.095271e-02	k: 571	n:20000
Cons ci ratio: 1.038922e-01	ci left: 6.298759e-02	ci right 6.993910e-02	k: 1328	n:20000
KS ci ratio: 1.605304e-01	ci left: 2.662195e-02	ci right 3.131633e-02	k: 578	n:20000
NRXN2   20000 perm   6 sec   (3328 perm/sec)   p_kst 2.890000e-02   p_cons 6.640000e-02   p_joint 2.855000e-02

Joint ci ratio: 1.338363e-01	ci left: 2.593660e-02	ci right 2.968892e-02	k: 833	n:30000
Cons ci ratio: 8.960573e-02	ci left: 5.727341e-02	ci right 6.267886e-02	k: 1798	n:30000
KS ci ratio: 1.308797e-01	ci left: 2.713018e-02	ci right 3.096175e-02	k: 870	n:30000
NRXN2   30000 perm   9 sec   (3210 perm/sec)   p_kst 2.900000e-02   p_cons 5.993333e-02   p_joint 2.776667e-02

Joint ci ratio: 1.165546e-01	ci left: 2.589497e-02	ci right 2.912412e-02	k: 1099	n:40000
Cons ci ratio: 7.701646e-02	ci left: 5.847765e-02	ci right 6.318635e-02	k: 2432	n:40000
KS ci ratio: 1.111628e-01	ci left: 2.847158e-02	ci right 3.184708e-02	k: 1205	n:40000
NRXN2   40000 perm   13 sec   (3131 perm/sec)   p_kst 3.012500e-02   p_cons 6.080000e-02   p_joint 2.747500e-02

Joint ci ratio: 1.020574e-01	ci left: 2.719544e-02	ci right 3.013962e-02	k: 1432	n:50000
Cons ci ratio: 6.900967e-02	ci left: 5.852421e-02	ci right 6.272698e-02	k: 3030	n:50000
KS ci ratio: 1.000275e-01	ci left: 2.830744e-02	ci right 3.130748e-02	k: 1489	n:50000
NRXN2   50000 perm   16 sec   (3073 perm/sec)   p_kst 2.978000e-02   p_cons 6.060000e-02   p_joint 2.864000e-02

Joint ci ratio: 8.187314e-02	ci left: 3.529132e-02	ci right 3.832036e-02	k: 2207	n:60000
Cons ci ratio: 6.287015e-02	ci left: 5.893372e-02	ci right 6.277556e-02	k: 3650	n:60000
KS ci ratio: 9.073857e-02	ci left: 2.879617e-02	ci right 3.154952e-02	k: 1809	n:60000
NRXN2   60000 perm   20 sec   (3022 perm/sec)   p_kst 3.015000e-02   p_cons 6.083333e-02   p_joint 3.678333e-02

Outputting figure to mutsig2_images.part000000000117/NRXN2.10_5496_60000_0.03015_0.060833_0.036783.png
                gene_name: NRXN2
               theta_stop: 0.091 
                    nperm: 60000 
                     p_ks: 0.030 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.061 
      ci_cons_bounds_left: 0.059 
     ci_cons_bounds_right: 0.063 
                  p_joint: 0.037 
     ci_joint_bounds_left: 0.035 
    ci_joint_bounds_right: 0.038 

Current progress: 9 percent done.
NRXN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.383594e-01	ci left: 6.913757e-02	ci right 7.951204e-02	k: 742	n:10000
Cons ci ratio: 1.013601e-01	ci left: 1.234670e-01	ci right 1.367493e-01	k: 1300	n:10000
KS ci ratio: 1.706816e-01	ci left: 4.580994e-02	ci right 5.445453e-02	k: 500	n:10000
NRXN3   10000 perm   2 sec   (4211 perm/sec)   p_kst 5.000000e-02   p_cons 1.300000e-01   p_joint 7.420000e-02

Joint ci ratio: 1.301312e-01	ci left: 4.056926e-02	ci right 4.626445e-02	k: 867	n:20000
Cons ci ratio: 7.153150e-02	ci left: 1.258605e-01	ci right 1.352472e-01	k: 2610	n:20000
KS ci ratio: 1.246042e-01	ci left: 4.420494e-02	ci right 5.012760e-02	k: 942	n:20000
NRXN3   20000 perm   5 sec   (3869 perm/sec)   p_kst 4.710000e-02   p_cons 1.305000e-01   p_joint 4.335000e-02

Joint ci ratio: 1.411425e-01	ci left: 2.329494e-02	ci right 2.686451e-02	k: 751	n:30000
Cons ci ratio: 5.844419e-02	ci left: 1.265758e-01	ci right 1.342293e-01	k: 3911	n:30000
KS ci ratio: 1.038570e-01	ci left: 4.297420e-02	ci right 4.771435e-02	k: 1359	n:30000
NRXN3   30000 perm   8 sec   (3729 perm/sec)   p_kst 4.530000e-02   p_cons 1.303667e-01   p_joint 2.503333e-02

Joint ci ratio: 1.075819e-01	ci left: 3.039416e-02	ci right 3.387419e-02	k: 1284	n:40000
Cons ci ratio: 5.024387e-02	ci left: 1.287466e-01	ci right 1.354069e-01	k: 5282	n:40000
KS ci ratio: 8.810947e-02	ci left: 4.506880e-02	ci right 4.924726e-02	k: 1885	n:40000
NRXN3   40000 perm   11 sec   (3642 perm/sec)   p_kst 4.712500e-02   p_cons 1.320500e-01   p_joint 3.210000e-02

Joint ci ratio: 7.591999e-02	ci left: 4.869498e-02	ci right 5.255741e-02	k: 2530	n:50000
Cons ci ratio: 4.112349e-02	ci left: 1.506084e-01	ci right 1.569519e-01	k: 7688	n:50000
KS ci ratio: 7.846770e-02	ci left: 4.567153e-02	ci right 4.942123e-02	k: 2376	n:50000
NRXN3   50000 perm   14 sec   (3566 perm/sec)   p_kst 4.752000e-02   p_cons 1.537600e-01   p_joint 5.060000e-02

Outputting figure to mutsig2_images.part000000000117/NRXN3.10_3600_50000_0.04752_0.15376_0.0506.png
                gene_name: NRXN3
               theta_stop: 0.078 
                    nperm: 50000 
                     p_ks: 0.048 
        ci_ks_bounds_left: 0.046 
       ci_ks_bounds_right: 0.049 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.051 
     ci_joint_bounds_left: 0.049 
    ci_joint_bounds_right: 0.053 

Current progress: 11 percent done.
NSD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.983124e-01	ci left: 3.386163e-02	ci right 4.141078e-02	k: 375	n:10000
Cons ci ratio: 9.316556e-02	ci left: 1.433484e-01	ci right 1.574560e-01	k: 1503	n:10000
KS ci ratio: 2.928552e-01	ci left: 1.502126e-02	ci right 2.026513e-02	k: 175	n:10000
NSD1   10000 perm   3 sec   (3109 perm/sec)   p_kst 1.750000e-02   p_cons 1.503000e-01   p_joint 3.750000e-02

Joint ci ratio: 2.079889e-01	ci left: 1.563326e-02	ci right 1.930895e-02	k: 348	n:20000
Cons ci ratio: 6.575047e-02	ci left: 1.459158e-01	ci right 1.558859e-01	k: 3017	n:20000
KS ci ratio: 2.184120e-01	ci left: 1.411743e-02	ci right 1.762537e-02	k: 316	n:20000
NSD1   20000 perm   7 sec   (2819 perm/sec)   p_kst 1.580000e-02   p_cons 1.508500e-01   p_joint 1.740000e-02

Joint ci ratio: 1.198451e-01	ci left: 3.236616e-02	ci right 3.652463e-02	k: 1032	n:30000
Cons ci ratio: 5.092458e-02	ci left: 1.607167e-01	ci right 1.691483e-01	k: 4947	n:30000
KS ci ratio: 1.745493e-01	ci left: 1.508879e-02	ci right 1.800592e-02	k: 495	n:30000
NSD1   30000 perm   11 sec   (2743 perm/sec)   p_kst 1.650000e-02   p_cons 1.649000e-01   p_joint 3.440000e-02

Joint ci ratio: 1.163373e-01	ci left: 2.599213e-02	ci right 2.922694e-02	k: 1103	n:40000
Cons ci ratio: 4.425615e-02	ci left: 1.603338e-01	ci right 1.676151e-01	k: 6558	n:40000
KS ci ratio: 1.485961e-01	ci left: 1.582807e-02	ci right 1.839272e-02	k: 683	n:40000
NSD1   40000 perm   15 sec   (2692 perm/sec)   p_kst 1.707500e-02   p_cons 1.639500e-01   p_joint 2.757500e-02

Joint ci ratio: 1.128089e-01	ci left: 2.224826e-02	ci right 2.492744e-02	k: 1178	n:50000
Cons ci ratio: 3.947387e-02	ci left: 1.614783e-01	ci right 1.680007e-01	k: 8236	n:50000
KS ci ratio: 1.351785e-01	ci left: 1.542088e-02	ci right 1.767575e-02	k: 826	n:50000
NSD1   50000 perm   19 sec   (2641 perm/sec)   p_kst 1.652000e-02   p_cons 1.647200e-01   p_joint 2.356000e-02

Joint ci ratio: 1.220569e-01	ci left: 1.586755e-02	ci right 1.794623e-02	k: 1013	n:60000
Cons ci ratio: 3.673413e-02	ci left: 1.565785e-01	ci right 1.624545e-01	k: 9570	n:60000
KS ci ratio: 1.238072e-01	ci left: 1.541501e-02	ci right 1.746548e-02	k: 985	n:60000
NSD1   60000 perm   23 sec   (2601 perm/sec)   p_kst 1.641667e-02   p_cons 1.595000e-01   p_joint 1.688333e-02

Joint ci ratio: 1.181906e-01	ci left: 1.455626e-02	ci right 1.639850e-02	k: 1082	n:70000
Cons ci ratio: 3.401133e-02	ci left: 1.567805e-01	ci right 1.622192e-01	k: 11164	n:70000
KS ci ratio: 1.145896e-01	ci left: 1.549984e-02	ci right 1.739770e-02	k: 1150	n:70000
NSD1   70000 perm   27 sec   (2571 perm/sec)   p_kst 1.642857e-02   p_cons 1.594857e-01   p_joint 1.545714e-02

Joint ci ratio: 1.033949e-01	ci left: 1.673664e-02	ci right 1.857358e-02	k: 1411	n:80000
Cons ci ratio: 3.181619e-02	ci left: 1.569441e-01	ci right 1.620306e-01	k: 12758	n:80000
KS ci ratio: 1.080450e-01	ci left: 1.531218e-02	ci right 1.707316e-02	k: 1294	n:80000
NSD1   80000 perm   31 sec   (2544 perm/sec)   p_kst 1.617500e-02   p_cons 1.594750e-01   p_joint 1.763750e-02

Joint ci ratio: 9.465479e-02	ci left: 1.781412e-02	ci right 1.959487e-02	k: 1682	n:90000
Cons ci ratio: 2.998775e-02	ci left: 1.571686e-01	ci right 1.619645e-01	k: 14360	n:90000
KS ci ratio: 1.015431e-01	ci left: 1.546112e-02	ci right 1.712583e-02	k: 1465	n:90000
NSD1   90000 perm   36 sec   (2520 perm/sec)   p_kst 1.627778e-02   p_cons 1.595556e-01   p_joint 1.868889e-02

Joint ci ratio: 8.146503e-02	ci left: 2.170730e-02	ci right 2.356053e-02	k: 2262	n:100000
Cons ci ratio: 2.841781e-02	ci left: 1.575835e-01	ci right 1.621362e-01	k: 15985	n:100000
KS ci ratio: 9.638915e-02	ci left: 1.548518e-02	ci right 1.706306e-02	k: 1626	n:100000
NSD1   100000 perm   40 sec   (2495 perm/sec)   p_kst 1.626000e-02   p_cons 1.598500e-01   p_joint 2.262000e-02

Outputting figure to mutsig2_images.part000000000117/NSD1.10_8179_100000_0.01626_0.15985_0.02262.png
                gene_name: NSD1
               theta_stop: 0.096 
                    nperm: 100000 
                     p_ks: 0.016 
        ci_ks_bounds_left: 0.015 
       ci_ks_bounds_right: 0.017 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.023 
     ci_joint_bounds_left: 0.022 
    ci_joint_bounds_right: 0.024 

Current progress: 13 percent done.
NRG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.789393e-02	ci left: 1.585590e-01	ci right 1.732362e-01	k: 1658	n:10000
Cons ci ratio: 1.974952e-01	ci left: 3.414726e-02	ci right 4.172496e-02	k: 378	n:10000
KS ci ratio: 3.388375e-02	ci left: 5.625333e-01	ci right 5.820246e-01	k: 5723	n:10000
NRG3   10000 perm   2 sec   (4867 perm/sec)   p_kst 5.723000e-01   p_cons 3.780000e-02   p_joint 1.658000e-01

Joint ci ratio: 5.043875e-02	ci left: 2.260652e-01	ci right 2.378129e-01	k: 4638	n:20000
Cons ci ratio: 1.393670e-01	ci left: 3.539255e-02	ci right 4.074282e-02	k: 760	n:20000
KS ci ratio: 2.458332e-02	ci left: 5.527868e-01	ci right 5.665958e-01	k: 11194	n:20000
NRG3   20000 perm   5 sec   (4359 perm/sec)   p_kst 5.597000e-01   p_cons 3.800000e-02   p_joint 2.319000e-01

Joint ci ratio: 5.795959e-02	ci left: 1.284521e-01	ci right 1.361525e-01	k: 3968	n:30000
Cons ci ratio: 1.143939e-01	ci left: 3.550805e-02	ci right 3.984874e-02	k: 1129	n:30000
KS ci ratio: 1.938512e-02	ci left: 5.711853e-01	ci right 5.823998e-01	k: 17304	n:30000
NRG3   30000 perm   7 sec   (4172 perm/sec)   p_kst 5.768000e-01   p_cons 3.763333e-02   p_joint 1.322667e-01

Joint ci ratio: 5.083306e-02	ci left: 1.261253e-01	ci right 1.327286e-01	k: 5176	n:40000
Cons ci ratio: 9.992147e-02	ci left: 3.519574e-02	ci right 3.892185e-02	k: 1481	n:40000
KS ci ratio: 1.676841e-02	ci left: 5.725161e-01	ci right 5.822226e-01	k: 23095	n:40000
NRG3   40000 perm   10 sec   (4054 perm/sec)   p_kst 5.773750e-01   p_cons 3.702500e-02   p_joint 1.294000e-01

Outputting figure to mutsig2_images.part000000000117/NRG3.9_2371_40000_0.57737_0.037025_0.1294.png
                gene_name: NRG3
               theta_stop: 0.100 
                    nperm: 40000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.037 
      ci_cons_bounds_left: 0.035 
     ci_cons_bounds_right: 0.039 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 15 percent done.
NTM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.808936e-02	ci left: 6.513244e-01	ci right 6.699820e-01	k: 6607	n:10000
Cons ci ratio: 5.084582e-02	ci left: 3.632113e-01	ci right 3.822629e-01	k: 3727	n:10000
KS ci ratio: 3.773984e-02	ci left: 5.090529e-01	ci right 5.287361e-01	k: 5189	n:10000
NTM   10000 perm   2 sec   (5755 perm/sec)   p_kst 5.189000e-01   p_cons 3.727000e-01   p_joint 6.607000e-01

Outputting figure to mutsig2_images.part000000000117/NTM.8_1203_10000_0.5189_0.3727_0.6607.png
                gene_name: NTM
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 17 percent done.
NR1H4
Processing conservation and coverage...
Processing mutations... 
Skipping 2 mutations outside exons of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.349480e-02	ci left: 7.269395e-01	ci right 7.443230e-01	k: 7357	n:10000
Cons ci ratio: 1.124744e-02	ci left: 9.186317e-01	ci right 9.291198e-01	k: 9240	n:10000
KS ci ratio: 4.504170e-02	ci left: 4.211655e-01	ci right 4.406747e-01	k: 4309	n:10000
NR1H4   10000 perm   2 sec   (5547 perm/sec)   p_kst 4.309000e-01   p_cons 9.240000e-01   p_joint 7.357000e-01

Outputting figure to mutsig2_images.part000000000117/NR1H4.5_1455_10000_0.4309_0.924_0.7357.png
                gene_name: NR1H4
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.74 

Current progress: 19 percent done.
NRCAM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.209097e-02	ci left: 4.545866e-01	ci right 4.742341e-01	k: 4644	n:10000
KS ci ratio: 2.011987e-02	ci left: 7.834036e-01	ci right 7.994263e-01	k: 7915	n:10000
NRCAM   10000 perm   2 sec   (4246 perm/sec)   p_kst 7.915000e-01   p_cons 4.644000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000117/NRCAM.6_4065_10000_0.7915_0.4644_1.png
                gene_name: NRCAM
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 21 percent done.
NR5A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.436868e-02	ci left: 4.285442e-01	ci right 4.480917e-01	k: 4383	n:10000
Cons ci ratio: 4.899491e-02	ci left: 3.806225e-01	ci right 3.998415e-01	k: 3902	n:10000
KS ci ratio: 4.948217e-02	ci left: 3.759451e-01	ci right 3.951216e-01	k: 3855	n:10000
NR5A2   10000 perm   2 sec   (5380 perm/sec)   p_kst 3.855000e-01   p_cons 3.902000e-01   p_joint 4.383000e-01

Outputting figure to mutsig2_images.part000000000117/NR5A2.5_1658_10000_0.3855_0.3902_0.4383.png
                gene_name: NR5A2
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 23 percent done.
NRP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.455374e-02	ci left: 2.606239e-01	ci right 2.781107e-01	k: 2693	n:10000
Cons ci ratio: 1.936165e-02	ci left: 7.959800e-01	ci right 8.116426e-01	k: 8039	n:10000
KS ci ratio: 8.729533e-02	ci left: 1.604251e-01	ci right 1.751689e-01	k: 1677	n:10000
NRP1   10000 perm   2 sec   (5132 perm/sec)   p_kst 1.677000e-01   p_cons 8.039000e-01   p_joint 2.693000e-01

Outputting figure to mutsig2_images.part000000000117/NRP1.5_2851_10000_0.1677_0.8039_0.2693.png
                gene_name: NRP1
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 26 percent done.
NRP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.325328e-02	ci left: 7.309807e-01	ci right 7.482795e-01	k: 7397	n:10000
Cons ci ratio: 2.855426e-02	ci left: 6.438786e-01	ci right 6.626321e-01	k: 6533	n:10000
KS ci ratio: 2.729154e-02	ci left: 6.642096e-01	ci right 6.826893e-01	k: 6735	n:10000
NRP2   10000 perm   2 sec   (5222 perm/sec)   p_kst 6.735000e-01   p_cons 6.533000e-01   p_joint 7.397000e-01

Outputting figure to mutsig2_images.part000000000117/NRP2.5_3176_10000_0.6735_0.6533_0.7397.png
                gene_name: NRP2
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 28 percent done.
NT5DC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.452217e-02	ci left: 4.268489e-01	ci right 4.463880e-01	k: 4366	n:10000
Cons ci ratio: 7.674665e-02	ci left: 1.988982e-01	ci right 2.148729e-01	k: 2068	n:10000
KS ci ratio: 2.483278e-02	ci left: 7.046281e-01	ci right 7.224473e-01	k: 7136	n:10000
NT5DC3   10000 perm   2 sec   (5803 perm/sec)   p_kst 7.136000e-01   p_cons 2.068000e-01   p_joint 4.366000e-01

Outputting figure to mutsig2_images.part000000000117/NT5DC3.5_1703_10000_0.7136_0.2068_0.4366.png
                gene_name: NT5DC3
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 30 percent done.
NR2E1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.795794e-02	ci left: 6.534378e-01	ci right 6.720673e-01	k: 6628	n:10000
Cons ci ratio: 2.640853e-02	ci left: 6.786140e-01	ci right 6.968765e-01	k: 6878	n:10000
KS ci ratio: 2.995464e-02	ci left: 6.217570e-01	ci right 6.407665e-01	k: 6313	n:10000
NR2E1   10000 perm   2 sec   (5837 perm/sec)   p_kst 6.313000e-01   p_cons 6.878000e-01   p_joint 6.628000e-01

Outputting figure to mutsig2_images.part000000000117/NR2E1.4_1194_10000_0.6313_0.6878_0.6628.png
                gene_name: NR2E1
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 32 percent done.
NR4A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.025848e-02	ci left: 1.848130e-01	ci right 2.003665e-01	k: 1925	n:10000
Cons ci ratio: 1.062005e-01	ci left: 1.134968e-01	ci right 1.263255e-01	k: 1198	n:10000
KS ci ratio: 8.290783e-02	ci left: 1.750712e-01	ci right 1.903141e-01	k: 1826	n:10000
NR4A1   10000 perm   2 sec   (5736 perm/sec)   p_kst 1.826000e-01   p_cons 1.198000e-01   p_joint 1.925000e-01

Joint ci ratio: 6.289135e-02	ci left: 1.575103e-01	ci right 1.677880e-01	k: 3252	n:20000
Cons ci ratio: 7.531074e-02	ci left: 1.147891e-01	ci right 1.238219e-01	k: 2385	n:20000
KS ci ratio: 5.960570e-02	ci left: 1.724738e-01	ci right 1.831201e-01	k: 3555	n:20000
NR4A1   20000 perm   4 sec   (5015 perm/sec)   p_kst 1.777500e-01   p_cons 1.192500e-01   p_joint 1.626000e-01

Outputting figure to mutsig2_images.part000000000117/NR4A1.4_1821_20000_0.17775_0.11925_0.1626.png
                gene_name: NR4A1
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 34 percent done.
NRBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.063518e-01	ci left: 1.132038e-01	ci right 1.260187e-01	k: 1195	n:10000
Cons ci ratio: 2.549010e-02	ci left: 6.937343e-01	ci right 7.117474e-01	k: 7028	n:10000
KS ci ratio: 1.893355e-01	ci left: 3.719780e-02	ci right 4.507236e-02	k: 410	n:10000
NRBP1   10000 perm   2 sec   (5804 perm/sec)   p_kst 4.100000e-02   p_cons 7.028000e-01   p_joint 1.195000e-01

Joint ci ratio: 8.359604e-02	ci left: 9.489433e-02	ci right 1.032226e-01	k: 1980	n:20000
Cons ci ratio: 1.772317e-02	ci left: 7.034548e-01	ci right 7.160841e-01	k: 14196	n:20000
KS ci ratio: 1.301312e-01	ci left: 4.056926e-02	ci right 4.626445e-02	k: 867	n:20000
NRBP1   20000 perm   4 sec   (5134 perm/sec)   p_kst 4.335000e-02   p_cons 7.098000e-01   p_joint 9.900000e-02

Joint ci ratio: 7.294867e-02	ci left: 8.458815e-02	ci right 9.102527e-02	k: 2633	n:30000
Cons ci ratio: 1.450966e-02	ci left: 7.035218e-01	ci right 7.138377e-01	k: 21261	n:30000
KS ci ratio: 1.068111e-01	ci left: 4.066722e-02	ci right 4.528848e-02	k: 1288	n:30000
NRBP1   30000 perm   6 sec   (4882 perm/sec)   p_kst 4.293333e-02   p_cons 7.087000e-01   p_joint 8.776667e-02

Joint ci ratio: 6.952360e-02	ci left: 7.105960e-02	ci right 7.620250e-02	k: 2944	n:40000
Cons ci ratio: 1.253460e-02	ci left: 7.052494e-01	ci right 7.141702e-01	k: 28389	n:40000
KS ci ratio: 9.260478e-02	ci left: 4.088610e-02	ci right 4.488060e-02	k: 1714	n:40000
NRBP1   40000 perm   9 sec   (4702 perm/sec)   p_kst 4.285000e-02   p_cons 7.097250e-01   p_joint 7.360000e-02

Outputting figure to mutsig2_images.part000000000117/NRBP1.4_1676_40000_0.04285_0.70973_0.0736.png
                gene_name: NRBP1
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.043 
        ci_ks_bounds_left: 0.041 
       ci_ks_bounds_right: 0.045 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.074 
     ci_joint_bounds_left: 0.071 
    ci_joint_bounds_right: 0.076 

Current progress: 36 percent done.
NSMAF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.519279e-02	ci left: 3.259469e-01	ci right 3.445492e-01	k: 3352	n:10000
Cons ci ratio: 5.503222e-02	ci left: 3.272376e-01	ci right 3.458577e-01	k: 3365	n:10000
KS ci ratio: 8.988259e-02	ci left: 1.525700e-01	ci right 1.670288e-01	k: 1597	n:10000
NSMAF   10000 perm   2 sec   (5092 perm/sec)   p_kst 1.597000e-01   p_cons 3.365000e-01   p_joint 3.352000e-01

Outputting figure to mutsig2_images.part000000000117/NSMAF.4_3034_10000_0.1597_0.3365_0.3352.png
                gene_name: NSMAF
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 38 percent done.
NSUN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.088478e-01	ci left: 1.085172e-01	ci right 1.211081e-01	k: 1147	n:10000
Cons ci ratio: 6.601149e-02	ci left: 2.520172e-01	ci right 2.693224e-01	k: 2606	n:10000
KS ci ratio: 1.278700e-01	ci left: 8.038196e-02	ci right 9.146065e-02	k: 858	n:10000
NSUN2   10000 perm   2 sec   (5440 perm/sec)   p_kst 8.580000e-02   p_cons 2.606000e-01   p_joint 1.147000e-01

Joint ci ratio: 6.598237e-02	ci left: 1.450282e-01	ci right 1.549738e-01	k: 2999	n:20000
Cons ci ratio: 4.622176e-02	ci left: 2.583472e-01	ci right 2.706213e-01	k: 5289	n:20000
KS ci ratio: 8.876230e-02	ci left: 8.489271e-02	ci right 9.282730e-02	k: 1776	n:20000
NSUN2   20000 perm   4 sec   (4826 perm/sec)   p_kst 8.880000e-02   p_cons 2.644500e-01   p_joint 1.499500e-01

Outputting figure to mutsig2_images.part000000000117/NSUN2.4_2380_20000_0.0888_0.26445_0.14995.png
                gene_name: NSUN2
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.089 
        ci_ks_bounds_left: 0.085 
       ci_ks_bounds_right: 0.093 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.15 

Current progress: 40 percent done.
NR2C2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.037097e-01	ci left: 1.184802e-01	ci right 1.315391e-01	k: 1249	n:10000
Cons ci ratio: 1.665611e-02	ci left: 8.398953e-01	ci right 8.541019e-01	k: 8471	n:10000
KS ci ratio: 1.588454e-01	ci left: 5.282421e-02	ci right 6.203572e-02	k: 573	n:10000
NR2C2   10000 perm   2 sec   (5984 perm/sec)   p_kst 5.730000e-02   p_cons 8.471000e-01   p_joint 1.249000e-01

Joint ci ratio: 7.808702e-02	ci left: 1.075135e-01	ci right 1.162997e-01	k: 2237	n:20000
Cons ci ratio: 1.204847e-02	ci left: 8.359589e-01	ci right 8.461418e-01	k: 16822	n:20000
KS ci ratio: 1.166432e-01	ci left: 5.032418e-02	ci right 5.660644e-02	k: 1068	n:20000
NR2C2   20000 perm   4 sec   (5254 perm/sec)   p_kst 5.340000e-02   p_cons 8.411000e-01   p_joint 1.118500e-01

Joint ci ratio: 6.767017e-02	ci left: 9.718550e-02	ci right 1.040254e-01	k: 3017	n:30000
Cons ci ratio: 9.849628e-03	ci left: 8.365766e-01	ci right 8.448906e-01	k: 25223	n:30000
KS ci ratio: 9.592074e-02	ci left: 5.019840e-02	ci right 5.528866e-02	k: 1581	n:30000
NR2C2   30000 perm   6 sec   (4972 perm/sec)   p_kst 5.270000e-02   p_cons 8.407667e-01   p_joint 1.005667e-01

Outputting figure to mutsig2_images.part000000000117/NR2C2.3_1904_30000_0.0527_0.84077_0.10057.png
                gene_name: NR2C2
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.053 
        ci_ks_bounds_left: 0.050 
       ci_ks_bounds_right: 0.055 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.097 
    ci_joint_bounds_right: 0.10 

Current progress: 43 percent done.
NR3C2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.196797e-02	ci left: 7.525160e-01	ci right 7.693318e-01	k: 7610	n:10000
Cons ci ratio: 7.485634e-03	ci left: 9.611050e-01	ci right 9.684210e-01	k: 9649	n:10000
KS ci ratio: 3.253919e-02	ci left: 5.822919e-01	ci right 6.016545e-01	k: 5920	n:10000
NR3C2   10000 perm   2 sec   (5414 perm/sec)   p_kst 5.920000e-01   p_cons 9.649000e-01   p_joint 7.610000e-01

Outputting figure to mutsig2_images.part000000000117/NR3C2.3_2987_10000_0.592_0.9649_0.761.png
                gene_name: NR3C2
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 45 percent done.
NR4A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.440474e-02	ci left: 4.281453e-01	ci right 4.476909e-01	k: 4379	n:10000
KS ci ratio: 2.361561e-02	ci left: 7.249193e-01	ci right 7.423444e-01	k: 7337	n:10000
NR4A2   10000 perm   2 sec   (5778 perm/sec)   p_kst 7.337000e-01   p_cons 4.379000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000117/NR4A2.3_1821_10000_0.7337_0.4379_1.png
                gene_name: NR4A2
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 47 percent done.
NR4A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.117213e-02	ci left: 2.821093e-01	ci right 3.000126e-01	k: 2910	n:10000
Cons ci ratio: 1.130635e-01	ci left: 1.012015e-01	ci right 1.134283e-01	k: 1072	n:10000
KS ci ratio: 2.542912e-02	ci left: 6.947428e-01	ci right 7.127384e-01	k: 7038	n:10000
NR4A3   10000 perm   2 sec   (5441 perm/sec)   p_kst 7.038000e-01   p_cons 1.072000e-01   p_joint 2.910000e-01

Joint ci ratio: 3.630174e-02	ci left: 3.615599e-01	ci right 3.749784e-01	k: 7365	n:20000
Cons ci ratio: 7.939116e-02	ci left: 1.043201e-01	ci right 1.129941e-01	k: 2172	n:20000
KS ci ratio: 1.788459e-02	ci left: 6.996816e-01	ci right 7.123584e-01	k: 14121	n:20000
NR4A3   20000 perm   4 sec   (4875 perm/sec)   p_kst 7.060500e-01   p_cons 1.086000e-01   p_joint 3.682500e-01

Outputting figure to mutsig2_images.part000000000117/NR4A3.3_2020_20000_0.70605_0.1086_0.36825.png
                gene_name: NR4A3
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 49 percent done.
NRD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.274819e-02	ci left: 4.469008e-01	ci right 4.665244e-01	k: 4567	n:10000
Cons ci ratio: 4.122974e-02	ci left: 4.648713e-01	ci right 4.845434e-01	k: 4747	n:10000
KS ci ratio: 6.244088e-02	ci left: 2.737893e-01	ci right 2.915374e-01	k: 2826	n:10000
NRD1   10000 perm   2 sec   (5016 perm/sec)   p_kst 2.826000e-01   p_cons 4.747000e-01   p_joint 4.567000e-01

Outputting figure to mutsig2_images.part000000000117/NRD1.3_3792_10000_0.2826_0.4747_0.4567.png
                gene_name: NRD1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 51 percent done.
NRG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.445550e-02	ci left: 2.612176e-01	ci right 2.787166e-01	k: 2699	n:10000
Cons ci ratio: 5.288510e-02	ci left: 3.451178e-01	ci right 3.639670e-01	k: 3545	n:10000
KS ci ratio: 7.448267e-02	ci left: 2.087570e-01	ci right 2.250082e-01	k: 2168	n:10000
NRG1   10000 perm   2 sec   (4510 perm/sec)   p_kst 2.168000e-01   p_cons 3.545000e-01   p_joint 2.699000e-01

Outputting figure to mutsig2_images.part000000000117/NRG1.3_3696_10000_0.2168_0.3545_0.2699.png
                gene_name: NRG1
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 53 percent done.
NRG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.337237e-03	ci left: 9.856678e-01	ci right 9.900411e-01	k: 9880	n:10000
KS ci ratio: 2.602805e-02	ci left: 6.848624e-01	ci right 7.030245e-01	k: 6940	n:10000
NRG2   10000 perm   2 sec   (5260 perm/sec)   p_kst 6.940000e-01   p_cons 9.880000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000117/NRG2.3_2684_10000_0.694_0.988_1.png
                gene_name: NRG2
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 55 percent done.
NRIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.956580e-02	ci left: 3.751490e-01	ci right 3.943182e-01	k: 3847	n:10000
Cons ci ratio: 1.076856e-01	ci left: 1.106648e-01	ci right 1.233592e-01	k: 1169	n:10000
KS ci ratio: 4.208251e-02	ci left: 4.546864e-01	ci right 4.743342e-01	k: 4645	n:10000
NRIP1   10000 perm   2 sec   (5223 perm/sec)   p_kst 4.645000e-01   p_cons 1.169000e-01   p_joint 3.847000e-01

Joint ci ratio: 4.822823e-02	ci left: 2.422749e-01	ci right 2.542984e-01	k: 4965	n:20000
Cons ci ratio: 7.572576e-02	ci left: 1.136581e-01	ci right 1.226533e-01	k: 2362	n:20000
KS ci ratio: 3.020571e-02	ci left: 4.501777e-01	ci right 4.640348e-01	k: 9142	n:20000
NRIP1   20000 perm   4 sec   (4622 perm/sec)   p_kst 4.571000e-01   p_cons 1.181000e-01   p_joint 2.482500e-01

Outputting figure to mutsig2_images.part000000000117/NRIP1.3_3481_20000_0.4571_0.1181_0.24825.png
                gene_name: NRIP1
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 57 percent done.
NRSN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.863342e-02	ci left: 2.997517e-01	ci right 3.179597e-01	k: 3088	n:10000
Cons ci ratio: 1.137492e-02	ci left: 9.169823e-01	ci right 9.275701e-01	k: 9224	n:10000
KS ci ratio: 8.869635e-02	ci left: 1.561040e-01	ci right 1.706926e-01	k: 1633	n:10000
NRSN1   10000 perm   1 sec   (6890 perm/sec)   p_kst 1.633000e-01   p_cons 9.224000e-01   p_joint 3.088000e-01

Outputting figure to mutsig2_images.part000000000117/NRSN1.3_596_10000_0.1633_0.9224_0.3088.png
                gene_name: NRSN1
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 60 percent done.
NSUN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.655537e-02	ci left: 5.249650e-01	ci right 5.446147e-01	k: 5348	n:10000
Cons ci ratio: 1.110452e-01	ci left: 1.046144e-01	ci right 1.170133e-01	k: 1107	n:10000
KS ci ratio: 2.729774e-02	ci left: 6.641089e-01	ci right 6.825900e-01	k: 6734	n:10000
NSUN3   10000 perm   2 sec   (6568 perm/sec)   p_kst 6.734000e-01   p_cons 1.107000e-01   p_joint 5.348000e-01

Joint ci ratio: 3.104069e-02	ci left: 4.366983e-01	ci right 4.505181e-01	k: 8872	n:20000
Cons ci ratio: 7.848243e-02	ci left: 1.065308e-01	ci right 1.152827e-01	k: 2217	n:20000
KS ci ratio: 1.899887e-02	ci left: 6.738361e-01	ci right 6.868114e-01	k: 13607	n:20000
NSUN3   20000 perm   3 sec   (5733 perm/sec)   p_kst 6.803500e-01   p_cons 1.108500e-01   p_joint 4.436000e-01

Outputting figure to mutsig2_images.part000000000117/NSUN3.3_1047_20000_0.68035_0.11085_0.4436.png
                gene_name: NSUN3
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.45 

Current progress: 62 percent done.
NSUN6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.631092e-01	ci left: 5.013112e-02	ci right 5.913054e-02	k: 545	n:10000
Cons ci ratio: 8.962374e-03	ci left: 9.459616e-01	ci right 9.545737e-01	k: 9504	n:10000
KS ci ratio: 3.527114e-01	ci left: 1.005013e-02	ci right 1.444087e-02	k: 121	n:10000
NSUN6   10000 perm   2 sec   (6279 perm/sec)   p_kst 1.210000e-02   p_cons 9.504000e-01   p_joint 5.450000e-02

Joint ci ratio: 1.765700e-01	ci left: 2.192330e-02	ci right 2.621660e-02	k: 480	n:20000
Cons ci ratio: 6.338164e-03	ci left: 9.472484e-01	ci right 9.533198e-01	k: 19007	n:20000
KS ci ratio: 2.463622e-01	ci left: 1.095946e-02	ci right 1.408466e-02	k: 249	n:20000
NSUN6   20000 perm   4 sec   (5570 perm/sec)   p_kst 1.245000e-02   p_cons 9.503500e-01   p_joint 2.400000e-02

Joint ci ratio: 1.472850e-01	ci left: 2.136549e-02	ci right 2.479440e-02	k: 691	n:30000
Cons ci ratio: 5.120286e-03	ci left: 9.488378e-01	ci right 9.537410e-01	k: 28540	n:30000
KS ci ratio: 1.995451e-01	ci left: 1.143190e-02	ci right 1.399710e-02	k: 380	n:30000
NSUN6   30000 perm   6 sec   (5277 perm/sec)   p_kst 1.266667e-02   p_cons 9.513333e-01   p_joint 2.303333e-02

Joint ci ratio: 9.765156e-02	ci left: 3.683087e-02	ci right 4.063647e-02	k: 1548	n:40000
Cons ci ratio: 4.364553e-03	ci left: 9.506507e-01	ci right 9.548333e-01	k: 38111	n:40000
KS ci ratio: 1.743832e-01	ci left: 1.138637e-02	ci right 1.358525e-02	k: 498	n:40000
NSUN6   40000 perm   8 sec   (5092 perm/sec)   p_kst 1.245000e-02   p_cons 9.527750e-01   p_joint 3.870000e-02

Joint ci ratio: 1.014036e-01	ci left: 2.754653e-02	ci right 3.050848e-02	k: 1450	n:50000
Cons ci ratio: 3.894711e-03	ci left: 9.510881e-01	ci right 9.548191e-01	k: 47649	n:50000
KS ci ratio: 1.469072e-01	ci left: 1.300773e-02	ci right 1.508925e-02	k: 701	n:50000
NSUN6   50000 perm   10 sec   (4947 perm/sec)   p_kst 1.402000e-02   p_cons 9.529800e-01   p_joint 2.900000e-02

Joint ci ratio: 1.029354e-01	ci left: 2.238388e-02	ci right 2.482917e-02	k: 1415	n:60000
Cons ci ratio: 3.555795e-03	ci left: 9.512423e-01	ci right 9.546471e-01	k: 57178	n:60000
KS ci ratio: 1.341398e-01	ci left: 1.309124e-02	ci right 1.498952e-02	k: 841	n:60000
NSUN6   60000 perm   12 sec   (4819 perm/sec)   p_kst 1.401667e-02   p_cons 9.529667e-01   p_joint 2.358333e-02

Joint ci ratio: 7.892237e-02	ci left: 3.269769e-02	ci right 3.539826e-02	k: 2382	n:70000
Cons ci ratio: 3.283384e-03	ci left: 9.516093e-01	ci right 9.547530e-01	k: 66724	n:70000
KS ci ratio: 1.246622e-01	ci left: 1.305960e-02	ci right 1.480960e-02	k: 974	n:70000
NSUN6   70000 perm   15 sec   (4699 perm/sec)   p_kst 1.391429e-02   p_cons 9.532000e-01   p_joint 3.402857e-02

Joint ci ratio: 8.936326e-02	ci left: 2.243688e-02	ci right 2.454787e-02	k: 1878	n:80000
Cons ci ratio: 3.055758e-03	ci left: 9.521703e-01	ci right 9.550967e-01	k: 76292	n:80000
KS ci ratio: 1.200608e-01	ci left: 1.235992e-02	ci right 1.395067e-02	k: 1051	n:80000
NSUN6   80000 perm   17 sec   (4596 perm/sec)   p_kst 1.313750e-02   p_cons 9.536500e-01   p_joint 2.347500e-02

Joint ci ratio: 8.883298e-02	ci left: 2.023618e-02	ci right 2.212819e-02	k: 1905	n:90000
Cons ci ratio: 2.891625e-03	ci left: 9.519238e-01	ci right 9.546913e-01	k: 85799	n:90000
KS ci ratio: 1.138050e-01	ci left: 1.227013e-02	ci right 1.376150e-02	k: 1170	n:90000
NSUN6   90000 perm   20 sec   (4503 perm/sec)   p_kst 1.300000e-02   p_cons 9.533222e-01   p_joint 2.116667e-02

Joint ci ratio: 8.936018e-02	ci left: 1.803565e-02	ci right 1.973242e-02	k: 1887	n:100000
Cons ci ratio: 2.739270e-03	ci left: 9.521260e-01	ci right 9.547476e-01	k: 95345	n:100000
KS ci ratio: 1.080538e-01	ci left: 1.228762e-02	ci right 1.370084e-02	k: 1298	n:100000
NSUN6   100000 perm   23 sec   (4410 perm/sec)   p_kst 1.298000e-02   p_cons 9.534500e-01   p_joint 1.887000e-02

Joint ci ratio: 7.951196e-02	ci left: 2.075791e-02	ci right 2.248562e-02	k: 2377	n:110000
Cons ci ratio: 2.613508e-03	ci left: 9.521286e-01	ci right 9.546292e-01	k: 104873	n:110000
KS ci ratio: 1.022273e-01	ci left: 1.251613e-02	ci right 1.387335e-02	k: 1450	n:110000
NSUN6   110000 perm   25 sec   (4323 perm/sec)   p_kst 1.318182e-02   p_cons 9.533909e-01   p_joint 2.160909e-02

Joint ci ratio: 7.748382e-02	ci left: 2.007354e-02	ci right 2.169973e-02	k: 2505	n:120000
Cons ci ratio: 2.503613e-03	ci left: 9.521332e-01	ci right 9.545282e-01	k: 114401	n:120000
KS ci ratio: 9.759165e-02	ci left: 1.261880e-02	ci right 1.392154e-02	k: 1591	n:120000
NSUN6   120000 perm   28 sec   (4240 perm/sec)   p_kst 1.325833e-02   p_cons 9.533417e-01   p_joint 2.087500e-02

Outputting figure to mutsig2_images.part000000000117/NSUN6.3_1454_120000_0.013258_0.95334_0.020875.png
                gene_name: NSUN6
               theta_stop: 0.098 
                    nperm: 120000 
                     p_ks: 0.013 
        ci_ks_bounds_left: 0.013 
       ci_ks_bounds_right: 0.014 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.021 
     ci_joint_bounds_left: 0.020 
    ci_joint_bounds_right: 0.022 

Current progress: 64 percent done.
NT5C2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.643060e-02	ci left: 8.434611e-01	ci right 8.575341e-01	k: 8506	n:10000
KS ci ratio: 1.340175e-02	ci left: 8.892362e-01	ci right 9.013324e-01	k: 8954	n:10000
NT5C2   10000 perm   2 sec   (6083 perm/sec)   p_kst 8.954000e-01   p_cons 8.506000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000117/NT5C2.3_1754_10000_0.8954_0.8506_1.png
                gene_name: NT5C2
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 66 percent done.
NT5C3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.012518e-02	ci left: 3.698758e-01	ci right 3.889945e-01	k: 3794	n:10000
Cons ci ratio: 4.834243e-02	ci left: 3.869933e-01	ci right 4.062670e-01	k: 3966	n:10000
KS ci ratio: 7.776672e-02	ci left: 1.946611e-01	ci right 2.105125e-01	k: 2025	n:10000
NT5C3   10000 perm   2 sec   (6205 perm/sec)   p_kst 2.025000e-01   p_cons 3.966000e-01   p_joint 3.794000e-01

Outputting figure to mutsig2_images.part000000000117/NT5C3.3_1087_10000_0.2025_0.3966_0.3794.png
                gene_name: NT5C3
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 68 percent done.
NTF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.985010e-02	ci left: 4.818551e-01	ci right 5.015497e-01	k: 4917	n:10000
Cons ci ratio: 1.569355e-02	ci left: 8.549826e-01	ci right 8.686059e-01	k: 8619	n:10000
KS ci ratio: 5.519279e-02	ci left: 3.259469e-01	ci right 3.445492e-01	k: 3352	n:10000
NTF3   10000 perm   2 sec   (6382 perm/sec)   p_kst 3.352000e-01   p_cons 8.619000e-01   p_joint 4.917000e-01

Outputting figure to mutsig2_images.part000000000117/NTF3.3_821_10000_0.3352_0.8619_0.4917.png
                gene_name: NTF3
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 70 percent done.
NTN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.293884e-02	ci left: 2.158598e-01	ci right 2.323013e-01	k: 2240	n:10000
Cons ci ratio: 2.449299e-02	ci left: 7.102792e-01	ci right 7.279930e-01	k: 7192	n:10000
KS ci ratio: 7.644396e-02	ci left: 2.001794e-01	ci right 2.161909e-01	k: 2081	n:10000
NTN1   10000 perm   2 sec   (5850 perm/sec)   p_kst 2.081000e-01   p_cons 7.192000e-01   p_joint 2.240000e-01

Outputting figure to mutsig2_images.part000000000117/NTN1.3_1839_10000_0.2081_0.7192_0.224.png
                gene_name: NTN1
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 72 percent done.
NTN5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.706549e-02	ci left: 8.333784e-01	ci right 8.478226e-01	k: 8407	n:10000
KS ci ratio: 2.948034e-02	ci left: 6.291955e-01	ci right 6.481237e-01	k: 6387	n:10000
NTN5   10000 perm   2 sec   (6309 perm/sec)   p_kst 6.387000e-01   p_cons 8.407000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000117/NTN5.3_1494_10000_0.6387_0.8407_1.png
                gene_name: NTN5
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 74 percent done.
NR1H3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.990708e-02	ci left: 2.907303e-01	ci right 3.087865e-01	k: 2997	n:10000
KS ci ratio: 1.802429e-02	ci left: 8.179167e-01	ci right 8.328932e-01	k: 8255	n:10000
NR1H3   10000 perm   2 sec   (6579 perm/sec)   p_kst 8.255000e-01   p_cons 2.997000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000117/NR1H3.2_1380_10000_0.8255_0.2997_1.png
                gene_name: NR1H3
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
NRARP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.559827e-01	ci left: 5.474973e-02	ci right 6.410897e-02	k: 593	n:10000
Cons ci ratio: 1.822799e-01	ci left: 4.015916e-02	ci right 4.830902e-02	k: 441	n:10000
KS ci ratio: 3.710244e-02	ci left: 5.175581e-01	ci right 5.372259e-01	k: 5274	n:10000
NRARP   10000 perm   1 sec   (7383 perm/sec)   p_kst 5.274000e-01   p_cons 4.410000e-02   p_joint 5.930000e-02

Joint ci ratio: 1.139107e-01	ci left: 5.270727e-02	ci right 5.912260e-02	k: 1117	n:20000
Cons ci ratio: 1.290471e-01	ci left: 4.124750e-02	ci right 4.698598e-02	k: 881	n:20000
KS ci ratio: 2.640081e-02	ci left: 5.173506e-01	ci right 5.312424e-01	k: 10486	n:20000
NRARP   20000 perm   3 sec   (6379 perm/sec)   p_kst 5.243000e-01   p_cons 4.405000e-02   p_joint 5.585000e-02

Joint ci ratio: 9.242605e-02	ci left: 5.394633e-02	ci right 5.920663e-02	k: 1696	n:30000
Cons ci ratio: 1.052425e-01	ci left: 4.186922e-02	ci right 4.655289e-02	k: 1325	n:30000
KS ci ratio: 2.154515e-02	ci left: 5.188968e-01	ci right 5.302318e-01	k: 15737	n:30000
NRARP   30000 perm   5 sec   (5996 perm/sec)   p_kst 5.245667e-01   p_cons 4.416667e-02   p_joint 5.653333e-02

Joint ci ratio: 7.979470e-02	ci left: 5.462506e-02	ci right 5.918953e-02	k: 2275	n:40000
Cons ci ratio: 9.092802e-02	ci left: 4.237759e-02	ci right 4.643888e-02	k: 1775	n:40000
KS ci ratio: 1.858574e-02	ci left: 5.216177e-01	ci right 5.314284e-01	k: 21061	n:40000
NRARP   40000 perm   7 sec   (5751 perm/sec)   p_kst 5.265250e-01   p_cons 4.437500e-02   p_joint 5.687500e-02

Outputting figure to mutsig2_images.part000000000117/NRARP.2_349_40000_0.52653_0.044375_0.056875.png
                gene_name: NRARP
               theta_stop: 0.091 
                    nperm: 40000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.044 
      ci_cons_bounds_left: 0.042 
     ci_cons_bounds_right: 0.046 
                  p_joint: 0.057 
     ci_joint_bounds_left: 0.055 
    ci_joint_bounds_right: 0.059 

Current progress: 79 percent done.
NRIP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.093867e-01	ci left: 1.075413e-01	ci right 1.200846e-01	k: 1137	n:10000
Cons ci ratio: 7.483523e-02	ci left: 2.071791e-01	ci right 2.233870e-01	k: 2152	n:10000
KS ci ratio: 4.364913e-01	ci left: 6.259350e-03	ci right 9.836166e-03	k: 79	n:10000
NRIP3   10000 perm   1 sec   (7009 perm/sec)   p_kst 7.900000e-03   p_cons 2.152000e-01   p_joint 1.137000e-01

Joint ci ratio: 1.021334e-01	ci left: 6.508590e-02	ci right 7.214014e-02	k: 1371	n:20000
Cons ci ratio: 5.243632e-02	ci left: 2.126407e-01	ci right 2.241413e-01	k: 4367	n:20000
KS ci ratio: 2.800644e-01	ci left: 8.341806e-03	ci right 1.110354e-02	k: 193	n:20000
NRIP3   20000 perm   3 sec   (6084 perm/sec)   p_kst 9.650000e-03   p_cons 2.183500e-01   p_joint 6.855000e-02

Joint ci ratio: 1.342508e-01	ci left: 2.577538e-02	ci right 2.951685e-02	k: 828	n:30000
Cons ci ratio: 4.288962e-02	ci left: 2.131071e-01	ci right 2.224809e-01	k: 6533	n:30000
KS ci ratio: 2.294711e-01	ci left: 8.527638e-03	ci right 1.076886e-02	k: 288	n:30000
NRIP3   30000 perm   5 sec   (5743 perm/sec)   p_kst 9.600000e-03   p_cons 2.177667e-01   p_joint 2.760000e-02

Joint ci ratio: 1.455931e-01	ci left: 1.650272e-02	ci right 1.911795e-02	k: 711	n:40000
Cons ci ratio: 3.736572e-02	ci left: 2.117272e-01	ci right 2.198141e-01	k: 8630	n:40000
KS ci ratio: 1.952618e-01	ci left: 9.000550e-03	ci right 1.097157e-02	k: 398	n:40000
NRIP3   40000 perm   7 sec   (5521 perm/sec)   p_kst 9.950000e-03   p_cons 2.157500e-01   p_joint 1.777500e-02

Joint ci ratio: 1.315073e-01	ci left: 1.631068e-02	ci right 1.862583e-02	k: 872	n:50000
Cons ci ratio: 3.343429e-02	ci left: 2.120219e-01	ci right 2.192512e-01	k: 10781	n:50000
KS ci ratio: 1.782476e-01	ci left: 8.725652e-03	ci right 1.045200e-02	k: 478	n:50000
NRIP3   50000 perm   9 sec   (5339 perm/sec)   p_kst 9.560000e-03   p_cons 2.156200e-01   p_joint 1.744000e-02

Joint ci ratio: 1.206722e-01	ci left: 1.623943e-02	ci right 1.834097e-02	k: 1036	n:60000
Cons ci ratio: 3.055796e-02	ci left: 2.119338e-01	ci right 2.185271e-01	k: 12913	n:60000
KS ci ratio: 1.648740e-01	ci left: 8.563417e-03	ci right 1.011793e-02	k: 559	n:60000
NRIP3   60000 perm   12 sec   (5183 perm/sec)   p_kst 9.316667e-03   p_cons 2.152167e-01   p_joint 1.726667e-02

Joint ci ratio: 1.285982e-01	ci left: 1.225695e-02	ci right 1.395520e-02	k: 916	n:70000
Cons ci ratio: 2.820216e-02	ci left: 2.132404e-01	ci right 2.193545e-01	k: 15140	n:70000
KS ci ratio: 1.522133e-01	ci left: 8.670912e-03	ci right 1.011305e-02	k: 656	n:70000
NRIP3   70000 perm   14 sec   (5045 perm/sec)   p_kst 9.371429e-03   p_cons 2.162857e-01   p_joint 1.308571e-02

Joint ci ratio: 1.051914e-01	ci left: 1.616422e-02	ci right 1.797105e-02	k: 1364	n:80000
Cons ci ratio: 2.633024e-02	ci left: 2.140855e-01	ci right 2.198101e-01	k: 17355	n:80000
KS ci ratio: 1.407694e-01	ci left: 8.923832e-03	ci right 1.028709e-02	k: 767	n:80000
NRIP3   80000 perm   16 sec   (4927 perm/sec)   p_kst 9.587500e-03   p_cons 2.169375e-01   p_joint 1.705000e-02

Joint ci ratio: 9.929473e-02	ci left: 1.617632e-02	ci right 1.787723e-02	k: 1531	n:90000
Cons ci ratio: 2.480209e-02	ci left: 2.145539e-01	ci right 2.199532e-01	k: 19552	n:90000
KS ci ratio: 1.333434e-01	ci left: 8.876546e-03	ci right 1.015537e-02	k: 855	n:90000
NRIP3   90000 perm   19 sec   (4818 perm/sec)   p_kst 9.500000e-03   p_cons 2.172444e-01   p_joint 1.701111e-02

Joint ci ratio: 9.353688e-02	ci left: 1.645204e-02	ci right 1.807613e-02	k: 1725	n:100000
Cons ci ratio: 2.352349e-02	ci left: 2.147770e-01	ci right 2.198994e-01	k: 21733	n:100000
KS ci ratio: 1.264411e-01	ci left: 8.917721e-03	ci right 1.013098e-02	k: 951	n:100000
NRIP3   100000 perm   21 sec   (4714 perm/sec)   p_kst 9.510000e-03   p_cons 2.173300e-01   p_joint 1.725000e-02

Joint ci ratio: 8.936614e-02	ci left: 1.642209e-02	ci right 1.796715e-02	k: 1890	n:110000
Cons ci ratio: 2.245061e-02	ci left: 2.145670e-01	ci right 2.194479e-01	k: 23870	n:110000
KS ci ratio: 1.201061e-01	ci left: 9.014546e-03	ci right 1.017517e-02	k: 1054	n:110000
NRIP3   110000 perm   24 sec   (4614 perm/sec)   p_kst 9.581818e-03   p_cons 2.170000e-01   p_joint 1.718182e-02

Joint ci ratio: 9.780981e-02	ci left: 1.256188e-02	ci right 1.386181e-02	k: 1584	n:120000
Cons ci ratio: 2.149857e-02	ci left: 2.146124e-01	ci right 2.192846e-01	k: 26033	n:120000
KS ci ratio: 1.157523e-01	ci left: 8.918399e-03	ci right 1.002217e-02	k: 1135	n:120000
NRIP3   120000 perm   27 sec   (4518 perm/sec)   p_kst 9.458333e-03   p_cons 2.169417e-01   p_joint 1.320000e-02

Joint ci ratio: 8.280677e-02	ci left: 1.624394e-02	ci right 1.765464e-02	k: 2202	n:130000
Cons ci ratio: 2.063997e-02	ci left: 2.149534e-01	ci right 2.194439e-01	k: 28235	n:130000
KS ci ratio: 1.123066e-01	ci left: 8.762905e-03	ci right 9.813004e-03	k: 1206	n:130000
NRIP3   130000 perm   29 sec   (4421 perm/sec)   p_kst 9.276923e-03   p_cons 2.171923e-01   p_joint 1.693846e-02

Joint ci ratio: 9.115990e-02	ci left: 1.244110e-02	ci right 1.363633e-02	k: 1824	n:140000
Cons ci ratio: 1.989210e-02	ci left: 2.149854e-01	ci right 2.193120e-01	k: 30400	n:140000
KS ci ratio: 1.088933e-01	ci left: 8.671747e-03	ci right 9.677311e-03	k: 1283	n:140000
NRIP3   140000 perm   32 sec   (4335 perm/sec)   p_kst 9.164286e-03   p_cons 2.171429e-01   p_joint 1.302857e-02

Joint ci ratio: 8.789497e-02	ci left: 1.251112e-02	ci right 1.366781e-02	k: 1962	n:150000
Cons ci ratio: 1.918995e-02	ci left: 2.155473e-01	ci right 2.197303e-01	k: 32645	n:150000
KS ci ratio: 1.041260e-01	ci left: 8.872372e-03	ci right 9.853400e-03	k: 1403	n:150000
NRIP3   150000 perm   35 sec   (4251 perm/sec)   p_kst 9.353333e-03   p_cons 2.176333e-01   p_joint 1.308000e-02

Joint ci ratio: 8.522501e-02	ci left: 1.249351e-02	ci right 1.361174e-02	k: 2087	n:160000
Cons ci ratio: 1.861386e-02	ci left: 2.150072e-01	ci right 2.190531e-01	k: 34724	n:160000
KS ci ratio: 1.008740e-01	ci left: 8.878110e-03	ci right 9.827297e-03	k: 1495	n:160000
NRIP3   160000 perm   38 sec   (4169 perm/sec)   p_kst 9.343750e-03   p_cons 2.170250e-01   p_joint 1.304375e-02

Joint ci ratio: 8.278446e-02	ci left: 1.247844e-02	ci right 1.356179e-02	k: 2212	n:170000
Cons ci ratio: 1.804914e-02	ci left: 2.152359e-01	ci right 2.191620e-01	k: 36923	n:170000
KS ci ratio: 9.834733e-02	ci left: 8.803244e-03	ci right 9.719491e-03	k: 1573	n:170000
NRIP3   170000 perm   41 sec   (4098 perm/sec)   p_kst 9.252941e-03   p_cons 2.171941e-01   p_joint 1.301176e-02

Outputting figure to mutsig2_images.part000000000117/NRIP3.2_754_170000_0.0092529_0.21719_0.013012.png
                gene_name: NRIP3
               theta_stop: 0.098 
                    nperm: 170000 
                     p_ks: 0.0093 
        ci_ks_bounds_left: 0.0088 
       ci_ks_bounds_right: 0.0097 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.013 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.014 

Current progress: 81 percent done.
NRN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.527114e-01	ci left: 1.005013e-02	ci right 1.444087e-02	k: 121	n:10000
Cons ci ratio: 6.811321e-02	ci left: 2.402520e-01	ci right 2.572946e-01	k: 2487	n:10000
KS ci ratio: 2.549086e-01	ci left: 2.015152e-02	ci right 2.613074e-02	k: 230	n:10000
NRN1   10000 perm   1 sec   (7237 perm/sec)   p_kst 2.300000e-02   p_cons 2.487000e-01   p_joint 1.210000e-02

Joint ci ratio: 2.387411e-01	ci left: 1.171137e-02	ci right 1.493242e-02	k: 265	n:20000
Cons ci ratio: 4.826055e-02	ci left: 2.420269e-01	ci right 2.540464e-01	k: 4960	n:20000
KS ci ratio: 1.843791e-01	ci left: 2.005956e-02	ci right 2.418100e-02	k: 441	n:20000
NRN1   20000 perm   3 sec   (6220 perm/sec)   p_kst 2.205000e-02   p_cons 2.480000e-01   p_joint 1.325000e-02

Joint ci ratio: 3.417378e-01	ci left: 3.621720e-03	ci right 5.143390e-03	k: 130	n:30000
Cons ci ratio: 3.908513e-02	ci left: 2.461674e-01	ci right 2.560142e-01	k: 7532	n:30000
KS ci ratio: 1.526791e-01	ci left: 1.985641e-02	ci right 2.317049e-02	k: 644	n:30000
NRN1   30000 perm   5 sec   (5848 perm/sec)   p_kst 2.146667e-02   p_cons 2.510667e-01   p_joint 4.333333e-03

Joint ci ratio: 2.982502e-01	ci left: 3.659335e-03	ci right 4.964242e-03	k: 171	n:40000
Cons ci ratio: 3.382853e-02	ci left: 2.470549e-01	ci right 2.555812e-01	k: 10052	n:40000
KS ci ratio: 1.323819e-01	ci left: 2.002834e-02	ci right 2.289172e-02	k: 857	n:40000
NRN1   40000 perm   7 sec   (5581 perm/sec)   p_kst 2.142500e-02   p_cons 2.513000e-01   p_joint 4.275000e-03

Joint ci ratio: 2.625059e-01	ci left: 3.857478e-03	ci right 5.041191e-03	k: 221	n:50000
Cons ci ratio: 3.030590e-02	ci left: 2.469056e-01	ci right 2.545234e-01	k: 12535	n:50000
KS ci ratio: 1.193479e-01	ci left: 1.985814e-02	ci right 2.239788e-02	k: 1055	n:50000
NRN1   50000 perm   9 sec   (5428 perm/sec)   p_kst 2.110000e-02   p_cons 2.507000e-01   p_joint 4.420000e-03

Joint ci ratio: 2.430487e-01	ci left: 3.792199e-03	ci right 4.856624e-03	k: 258	n:60000
Cons ci ratio: 2.764479e-02	ci left: 2.475178e-01	ci right 2.544729e-01	k: 15059	n:60000
KS ci ratio: 1.094445e-01	ci left: 1.978649e-02	ci right 2.209351e-02	k: 1255	n:60000
NRN1   60000 perm   11 sec   (5298 perm/sec)   p_kst 2.091667e-02   p_cons 2.509833e-01   p_joint 4.300000e-03

Joint ci ratio: 1.522133e-01	ci left: 8.670912e-03	ci right 1.011305e-02	k: 656	n:70000
Cons ci ratio: 2.550013e-02	ci left: 2.491568e-01	ci right 2.556066e-01	k: 17666	n:70000
KS ci ratio: 1.006730e-01	ci left: 2.013168e-02	ci right 2.227969e-02	k: 1483	n:70000
NRN1   70000 perm   14 sec   (5168 perm/sec)   p_kst 2.118571e-02   p_cons 2.523714e-01   p_joint 9.371429e-03

Joint ci ratio: 2.033180e-01	ci left: 4.154756e-03	ci right 5.106717e-03	k: 369	n:80000
Cons ci ratio: 2.388315e-02	ci left: 2.488947e-01	ci right 2.549233e-01	k: 20152	n:80000
KS ci ratio: 9.483011e-02	ci left: 1.991989e-02	ci right 2.191507e-02	k: 1672	n:80000
NRN1   80000 perm   16 sec   (5044 perm/sec)   p_kst 2.090000e-02   p_cons 2.519000e-01   p_joint 4.612500e-03

Joint ci ratio: 1.350257e-01	ci left: 8.650978e-03	ci right 9.914288e-03	k: 834	n:90000
Cons ci ratio: 2.251866e-02	ci left: 2.490442e-01	ci right 2.547273e-01	k: 22669	n:90000
KS ci ratio: 8.972680e-02	ci left: 1.983406e-02	ci right 2.170811e-02	k: 1868	n:90000
NRN1   90000 perm   18 sec   (4924 perm/sec)   p_kst 2.075556e-02   p_cons 2.518778e-01   p_joint 9.266667e-03

Joint ci ratio: 7.413296e-02	ci left: 2.619072e-02	ci right 2.821683e-02	k: 2719	n:100000
Cons ci ratio: 2.138628e-02	ci left: 2.487832e-01	ci right 2.541712e-01	k: 25147	n:100000
KS ci ratio: 8.551569e-02	ci left: 1.969919e-02	ci right 2.146877e-02	k: 2057	n:100000
NRN1   100000 perm   21 sec   (4813 perm/sec)   p_kst 2.057000e-02   p_cons 2.514700e-01   p_joint 2.719000e-02

Outputting figure to mutsig2_images.part000000000117/NRN1.2_441_100000_0.02057_0.25147_0.02719.png
                gene_name: NRN1
               theta_stop: 0.086 
                    nperm: 100000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.021 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.027 
     ci_joint_bounds_left: 0.026 
    ci_joint_bounds_right: 0.028 

Current progress: 83 percent done.
NRSN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.082595e-02	ci left: 9.239968e-01	ci right 9.341516e-01	k: 9292	n:10000
KS ci ratio: 2.870566e-02	ci left: 6.414642e-01	ci right 6.602478e-01	k: 6509	n:10000
NRSN2   10000 perm   1 sec   (7063 perm/sec)   p_kst 6.509000e-01   p_cons 9.292000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000117/NRSN2.2_623_10000_0.6509_0.9292_1.png
                gene_name: NRSN2
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 85 percent done.
NSF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.196672e-01	ci left: 9.107270e-02	ci right 1.027633e-01	k: 968	n:10000
Cons ci ratio: 1.453474e-01	ci left: 6.285242e-02	ci right 7.280114e-02	k: 677	n:10000
KS ci ratio: 5.590609e-02	ci left: 3.202883e-01	ci right 3.388111e-01	k: 3295	n:10000
NSF   10000 perm   2 sec   (5902 perm/sec)   p_kst 3.295000e-01   p_cons 6.770000e-02   p_joint 9.680000e-02

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 8.592627e-02	ci left: 9.018588e-02	ci right 9.833252e-02	k: 1884	n:20000
KS ci ratio: 4.015703e-02	ci left: 3.161722e-01	ci right 3.291794e-01	k: 6453	n:20000
NSF   20000 perm   4 sec   (5118 perm/sec)   p_kst 3.226500e-01   p_cons 9.420000e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000117/NSF.2_2319_20000_0.32265_0.0942_1.png
                gene_name: NSF
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.094 
      ci_cons_bounds_left: 0.090 
     ci_cons_bounds_right: 0.098 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
NSMCE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.823355e-02	ci left: 6.490099e-01	ci right 6.676978e-01	k: 6584	n:10000
Cons ci ratio: 1.027334e-02	ci left: 9.308177e-01	ci right 9.405266e-01	k: 9358	n:10000
KS ci ratio: 1.358092e-01	ci left: 7.165494e-02	ci right 8.219310e-02	k: 768	n:10000
NSMCE1   10000 perm   1 sec   (6942 perm/sec)   p_kst 7.680000e-02   p_cons 9.358000e-01   p_joint 6.584000e-01

Joint ci ratio: 9.845227e-03	ci left: 8.835478e-01	ci right 8.923391e-01	k: 17760	n:20000
Cons ci ratio: 7.352442e-03	ci left: 9.307777e-01	ci right 9.376954e-01	k: 18686	n:20000
KS ci ratio: 9.483644e-02	ci left: 7.495571e-02	ci right 8.246732e-02	k: 1573	n:20000
NSMCE1   20000 perm   3 sec   (6066 perm/sec)   p_kst 7.865000e-02   p_cons 9.343000e-01   p_joint 8.880000e-01

Outputting figure to mutsig2_images.part000000000117/NSMCE1.2_829_20000_0.07865_0.9343_0.888.png
                gene_name: NSMCE1
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.079 
        ci_ks_bounds_left: 0.075 
       ci_ks_bounds_right: 0.082 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 89 percent done.
NT5C1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.065741e-02	ci left: 2.855770e-01	ci right 3.035428e-01	k: 2945	n:10000
Cons ci ratio: 2.229388e-02	ci left: 7.470537e-01	ci right 7.639972e-01	k: 7556	n:10000
KS ci ratio: 1.052552e-01	ci left: 1.153530e-01	ci right 1.282683e-01	k: 1217	n:10000
NT5C1A   10000 perm   1 sec   (6677 perm/sec)   p_kst 1.217000e-01   p_cons 7.556000e-01   p_joint 2.945000e-01

Joint ci ratio: 4.546763e-02	ci left: 2.647494e-01	ci right 2.771173e-01	k: 5418	n:20000
Cons ci ratio: 1.517915e-02	ci left: 7.633975e-01	ci right 7.751241e-01	k: 15386	n:20000
KS ci ratio: 7.541845e-02	ci left: 1.144940e-01	ci right 1.235171e-01	k: 2379	n:20000
NT5C1A   20000 perm   3 sec   (5831 perm/sec)   p_kst 1.189500e-01   p_cons 7.693000e-01   p_joint 2.709000e-01

Outputting figure to mutsig2_images.part000000000117/NT5C1A.2_1131_20000_0.11895_0.7693_0.2709.png
                gene_name: NT5C1A
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 91 percent done.
NT5C1B
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 94 percent done.
NT5E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.519813e-02	ci left: 4.194707e-01	ci right 4.389705e-01	k: 4292	n:10000
KS ci ratio: 2.856056e-02	ci left: 6.437780e-01	ci right 6.625327e-01	k: 6532	n:10000
NT5E   10000 perm   2 sec   (6231 perm/sec)   p_kst 6.532000e-01   p_cons 4.292000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000117/NT5E.2_1761_10000_0.6532_0.4292_1.png
                gene_name: NT5E
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
NTHL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.562438e-02	ci left: 6.915160e-01	ci right 7.095671e-01	k: 7006	n:10000
Cons ci ratio: 2.452937e-02	ci left: 7.096736e-01	ci right 7.273989e-01	k: 7186	n:10000
KS ci ratio: 3.967515e-02	ci left: 4.840539e-01	ci right 5.037497e-01	k: 4939	n:10000
NTHL1   10000 perm   1 sec   (6861 perm/sec)   p_kst 4.939000e-01   p_cons 7.186000e-01   p_joint 7.006000e-01

Outputting figure to mutsig2_images.part000000000117/NTHL1.2_963_10000_0.4939_0.7186_0.7006.png
                gene_name: NTHL1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 98 percent done.
NTN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.685211e-02	ci left: 6.713602e-01	ci right 6.897345e-01	k: 6806	n:10000
KS ci ratio: 4.611379e-02	ci left: 4.097030e-01	ci right 4.291440e-01	k: 4194	n:10000
NTN4   10000 perm   2 sec   (6149 perm/sec)   p_kst 4.194000e-01   p_cons 6.806000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000117/NTN4.2_1927_10000_0.4194_0.6806_1.png
                gene_name: NTN4
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000117
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 117 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1723>
Subject: Job 8004324: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1723>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000118> was used as the working directory.
Started at Sun Nov 11 15:10:13 2012
Results reported at Sun Nov 11 15:39:34 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000118.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000118.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 118  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000118.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1790.34 sec.
    Max Memory :      4838 MB
    Max Swap   :      7092 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
118
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 118
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 118: processing genes 10586 - 10675
Calculating significance of each gene.
Using projection method.
10586	NTNG1	8.883039e-01
10587	NTNG2	6.903341e-01
10588	NTRK1	6.927064e-01
10589	NTRK2	9.734417e-01
10590	NTRK3	5.501343e-01
10591	NTS	3.113335e-02
10592	NTSR1	2.989627e-01
10593	NTSR2	6.960818e-02
10594	NUAK1	2.366125e-01
10595	NUAK2	7.938738e-01
10596	NUB1	1
10597	NUBP1	1
10598	NUBP2	1
10599	NUBPL	6.027557e-01
10600	NUCB1	4.182379e-01
10601	NUCB2	6.207763e-03
10602	NUCKS1	4.361925e-01
10603	NUDC	1
10604	NUDCD1	1
10605	NUDCD2	1
10606	NUDCD3	6.152058e-01
10607	NUDT1	4.439000e-02
10608	NUDT10	1
In gene NUDT11 the following bins exceed PROBCAP:
    LUSC-46-3766-TP	categ 6	N = 449     n = 1	mu =   6.69e-08
10609	NUDT11	3.949326e-02
10610	NUDT12	5.706489e-01
10611	NUDT13	1
10612	NUDT14	4.889599e-01
10613	NUDT15	1
10614	NUDT16	5.170952e-01
10615	NUDT16L1	1
10616	NUDT17	1
10617	NUDT18	1
10618	NUDT19	2.699168e-01
10619	NUDT2	1
10620	NUDT21	1
10621	NUDT22	2.530932e-01
10622	NUDT3	1
10623	NUDT4	1.568539e-01
10624	NUDT5	1
10625	NUDT6	1.956170e-01
10626	NUDT7	3.260405e-01
10627	NUDT8	2.030158e-01
10628	NUDT9	4.410098e-01
10629	NUF2	1.459884e-01
10630	NUFIP1	4.385616e-01
10631	NUFIP2	1
10632	NUMA1	9.997765e-01
10633	NUMB	1
10634	NUMBL	1
10635	NUP107	8.814182e-01
10636	NUP133	5.876214e-01
10637	NUP153	9.530360e-01
10638	NUP155	9.861095e-01
10639	NUP160	1
10640	NUP188	9.977968e-01
10641	NUP205	7.241688e-01
10642	NUP210	9.970110e-01
10643	NUP210L	4.928902e-01
10644	NUP214	9.808114e-01
10645	NUP35	1
10646	NUP37	2.709118e-03
10647	NUP43	6.834361e-01
10648	NUP50	1
10649	NUP54	1
10650	NUP62	2.572769e-01
10651	NUP62CL	5.165847e-01
10652	NUP85	8.890064e-01
10653	NUP88	1
10654	NUP93	9.267741e-01
10655	NUP98	1
10656	NUPL1	8.931138e-01
10657	NUPL2	4.886596e-01
10658	NUPR1	1
10659	NUS1	1
10660	NUSAP1	3.508358e-01
10661	NUTF2	1
10662	NVL	9.153597e-01
10663	NWD1	8.841079e-01
10664	NXF1	6.273612e-01
10665	NXF3	6.439348e-01
10666	NXF5	1.660833e-02
10667	NXN	1
10668	NXNL1	1
10669	NXNL2	2.052663e-01
10670	NXPH1	1.115258e-01
10671	NXPH2	9.361347e-02
10672	NXPH3	4.145589e-01
10673	NXPH4	1
10674	NXT1	3.325305e-01
10675	NXT2	1
Done

Running MutSig 2:
Scatter job 118: processing genes 10586 - 10675
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
NUP210L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.074812e-02	ci left: 3.641064e-01	ci right 3.831672e-01	k: 3736	n:10000
Cons ci ratio: 9.114155e-02	ci left: 1.489391e-01	ci right 1.632618e-01	k: 1560	n:10000
KS ci ratio: 3.808897e-02	ci left: 5.044512e-01	ci right 5.241404e-01	k: 5143	n:10000
NUP210L   10000 perm   2 sec   (4196 perm/sec)   p_kst 5.143000e-01   p_cons 1.560000e-01   p_joint 3.736000e-01

Outputting figure to mutsig2_images.part000000000118/NUP210L.14_5827_10000_0.5143_0.156_0.3736.png
                gene_name: NUP210L
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 2 percent done.
NTRK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.299974e-02	ci left: 2.702248e-01	ci right 2.879041e-01	k: 2790	n:10000
Cons ci ratio: 1.063575e-02	ci left: 9.263722e-01	ci right 9.363747e-01	k: 9315	n:10000
KS ci ratio: 9.600000e-02	ci left: 1.359974e-01	ci right 1.498113e-01	k: 1428	n:10000
NTRK3   10000 perm   2 sec   (5635 perm/sec)   p_kst 1.428000e-01   p_cons 9.315000e-01   p_joint 2.790000e-01

Outputting figure to mutsig2_images.part000000000118/NTRK3.9_2854_10000_0.1428_0.9315_0.279.png
                gene_name: NTRK3
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 5 percent done.
NUP133
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.679055e-02	ci left: 3.134405e-01	ci right 3.318629e-01	k: 3226	n:10000
Cons ci ratio: 2.298170e-02	ci left: 7.355281e-01	ci right 7.527294e-01	k: 7442	n:10000
KS ci ratio: 7.310703e-02	ci left: 2.150704e-01	ci right 2.314911e-01	k: 2232	n:10000
NUP133   10000 perm   2 sec   (5219 perm/sec)   p_kst 2.232000e-01   p_cons 7.442000e-01   p_joint 3.226000e-01

Outputting figure to mutsig2_images.part000000000118/NUP133.9_3575_10000_0.2232_0.7442_0.3226.png
                gene_name: NUP133
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 7 percent done.
NUP205
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.980258e-02	ci left: 7.886762e-01	ci right 8.045507e-01	k: 7967	n:10000
Cons ci ratio: 1.567378e-02	ci left: 8.552887e-01	ci right 8.688996e-01	k: 8622	n:10000
KS ci ratio: 2.615064e-02	ci left: 6.828465e-01	ci right 7.010415e-01	k: 6920	n:10000
NUP205   10000 perm   2 sec   (4475 perm/sec)   p_kst 6.920000e-01   p_cons 8.622000e-01   p_joint 7.967000e-01

Outputting figure to mutsig2_images.part000000000118/NUP205.9_6211_10000_0.692_0.8622_0.7967.png
                gene_name: NUP205
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 10 percent done.
NUP153
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.257961e-02	ci left: 5.816898e-01	ci right 6.010569e-01	k: 5914	n:10000
Cons ci ratio: 3.861067e-02	ci left: 4.976503e-01	ci right 5.173453e-01	k: 5075	n:10000
KS ci ratio: 5.449446e-02	ci left: 3.316070e-01	ci right 3.502858e-01	k: 3409	n:10000
NUP153   10000 perm   2 sec   (5064 perm/sec)   p_kst 3.409000e-01   p_cons 5.075000e-01   p_joint 5.914000e-01

Outputting figure to mutsig2_images.part000000000118/NUP153.8_4516_10000_0.3409_0.5075_0.5914.png
                gene_name: NUP153
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 12 percent done.
NUCB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.787022e-01	ci left: 8.595766e-03	ci right 1.269681e-02	k: 105	n:10000
Cons ci ratio: 3.388375e-02	ci left: 5.625333e-01	ci right 5.820246e-01	k: 5723	n:10000
KS ci ratio: 1.599773e+00	ci left: 1.623679e-04	ci right 1.166444e-03	k: 5	n:10000
NUCB2   10000 perm   2 sec   (6152 perm/sec)   p_kst 5.000000e-04   p_cons 5.723000e-01   p_joint 1.050000e-02

Joint ci ratio: 1.989008e-01	ci left: 1.715307e-02	ci right 2.098856e-02	k: 380	n:20000
Cons ci ratio: 2.324170e-02	ci left: 5.802893e-01	ci right 5.939854e-01	k: 11743	n:20000
KS ci ratio: 8.760784e-01	ci left: 5.720559e-04	ci right 1.483147e-03	k: 19	n:20000
NUCB2   20000 perm   4 sec   (5499 perm/sec)   p_kst 9.500000e-04   p_cons 5.871500e-01   p_joint 1.900000e-02

Joint ci ratio: 2.514890e-01	ci left: 7.023142e-03	ci right 9.073849e-03	k: 240	n:30000
Cons ci ratio: 1.894388e-02	ci left: 5.824054e-01	ci right 5.935775e-01	k: 17640	n:30000
KS ci ratio: 6.718822e-01	ci left: 7.573066e-04	ci right 1.544465e-03	k: 33	n:30000
NUCB2   30000 perm   6 sec   (5277 perm/sec)   p_kst 1.100000e-03   p_cons 5.880000e-01   p_joint 8.000000e-03

Joint ci ratio: 2.538728e-01	ci left: 5.173036e-03	ci right 6.700031e-03	k: 236	n:40000
Cons ci ratio: 1.633166e-02	ci left: 5.853616e-01	ci right 5.950253e-01	k: 23608	n:40000
KS ci ratio: 6.118797e-01	ci left: 7.145078e-04	ci right 1.361470e-03	k: 40	n:40000
NUCB2   40000 perm   8 sec   (5121 perm/sec)   p_kst 1.000000e-03   p_cons 5.902000e-01   p_joint 5.900000e-03

Joint ci ratio: 2.477981e-01	ci left: 4.363108e-03	ci right 5.615426e-03	k: 248	n:50000
Cons ci ratio: 1.458884e-02	ci left: 5.864951e-01	ci right 5.951343e-01	k: 29541	n:50000
KS ci ratio: 5.331510e-01	ci left: 7.941104e-04	ci right 1.386280e-03	k: 53	n:50000
NUCB2   50000 perm   10 sec   (5001 perm/sec)   p_kst 1.060000e-03   p_cons 5.908200e-01   p_joint 4.960000e-03

Joint ci ratio: 2.514764e-01	ci left: 3.526356e-03	ci right 4.555863e-03	k: 241	n:60000
Cons ci ratio: 1.335509e-02	ci left: 5.855179e-01	ci right 5.934068e-01	k: 35368	n:60000
KS ci ratio: 4.897345e-01	ci left: 8.069402e-04	ci right 1.343209e-03	k: 63	n:60000
NUCB2   60000 perm   12 sec   (4889 perm/sec)   p_kst 1.050000e-03   p_cons 5.894667e-01   p_joint 4.016667e-03

Joint ci ratio: 2.350618e-01	ci left: 3.492134e-03	ci right 4.435431e-03	k: 276	n:70000
Cons ci ratio: 1.234062e-02	ci left: 5.867462e-01	ci right 5.940463e-01	k: 41328	n:70000
KS ci ratio: 4.585587e-01	ci left: 8.048781e-04	ci right 1.295143e-03	k: 72	n:70000
NUCB2   70000 perm   15 sec   (4792 perm/sec)   p_kst 1.028571e-03   p_cons 5.904000e-01   p_joint 3.942857e-03

Joint ci ratio: 2.346957e-01	ci left: 3.067300e-03	ci right 3.894353e-03	k: 277	n:80000
Cons ci ratio: 1.150815e-02	ci left: 5.884722e-01	ci right 5.952961e-01	k: 47351	n:80000
KS ci ratio: 4.380474e-01	ci left: 7.818886e-04	ci right 1.230570e-03	k: 79	n:80000
NUCB2   80000 perm   17 sec   (4691 perm/sec)   p_kst 9.875000e-04   p_cons 5.918875e-01   p_joint 3.462500e-03

Joint ci ratio: 2.180607e-01	ci left: 3.187709e-03	ci right 3.978153e-03	k: 321	n:90000
Cons ci ratio: 1.084822e-02	ci left: 5.887473e-01	ci right 5.951801e-01	k: 53277	n:90000
KS ci ratio: 3.977989e-01	ci left: 8.640862e-04	ci right 1.302429e-03	k: 96	n:90000
NUCB2   90000 perm   20 sec   (4607 perm/sec)   p_kst 1.066667e-03   p_cons 5.919667e-01   p_joint 3.566667e-03

Joint ci ratio: 1.738229e-01	ci left: 4.620073e-03	ci right 5.509007e-03	k: 505	n:100000
Cons ci ratio: 1.032282e-02	ci left: 5.874446e-01	ci right 5.935501e-01	k: 59050	n:100000
KS ci ratio: 3.735498e-01	ci left: 8.950862e-04	ci right 1.314717e-03	k: 109	n:100000
NUCB2   100000 perm   22 sec   (4516 perm/sec)   p_kst 1.090000e-03   p_cons 5.905000e-01   p_joint 5.050000e-03

Joint ci ratio: 2.094987e-01	ci left: 2.840388e-03	ci right 3.513501e-03	k: 348	n:110000
Cons ci ratio: 1.001996e-02	ci left: 5.789057e-01	ci right 5.847445e-01	k: 64001	n:110000
KS ci ratio: 3.561660e-01	ci left: 9.045523e-04	ci right 1.304321e-03	k: 120	n:110000
NUCB2   110000 perm   25 sec   (4435 perm/sec)   p_kst 1.090909e-03   p_cons 5.818273e-01   p_joint 3.163636e-03

Joint ci ratio: 1.818253e-01	ci left: 3.507481e-03	ci right 4.216828e-03	k: 462	n:120000
Cons ci ratio: 9.590148e-03	ci left: 5.791949e-01	ci right 5.847845e-01	k: 69839	n:120000
KS ci ratio: 3.423036e-01	ci left: 9.051991e-04	ci right 1.286240e-03	k: 130	n:120000
NUCB2   120000 perm   27 sec   (4364 perm/sec)   p_kst 1.083333e-03   p_cons 5.819917e-01   p_joint 3.850000e-03

Joint ci ratio: 1.778491e-01	ci left: 3.391923e-03	ci right 4.061283e-03	k: 483	n:130000
Cons ci ratio: 9.210124e-03	ci left: 5.795056e-01	ci right 5.848753e-01	k: 75685	n:130000
KS ci ratio: 3.264844e-01	ci left: 9.271787e-04	ci right 1.295657e-03	k: 143	n:130000
NUCB2   130000 perm   30 sec   (4301 perm/sec)   p_kst 1.100000e-03   p_cons 5.821923e-01   p_joint 3.715385e-03

Joint ci ratio: 1.734342e-01	ci left: 3.320353e-03	ci right 3.957620e-03	k: 508	n:140000
Cons ci ratio: 8.872357e-03	ci left: 5.797543e-01	ci right 5.849281e-01	k: 81528	n:140000
KS ci ratio: 3.136752e-01	ci left: 9.397836e-04	ci right 1.295684e-03	k: 155	n:140000
NUCB2   140000 perm   33 sec   (4240 perm/sec)   p_kst 1.107143e-03   p_cons 5.823429e-01   p_joint 3.628571e-03

Joint ci ratio: 1.680734e-01	ci left: 3.309594e-03	ci right 3.923173e-03	k: 541	n:150000
Cons ci ratio: 8.563111e-03	ci left: 5.803197e-01	ci right 5.853171e-01	k: 87423	n:150000
KS ci ratio: 3.059322e-01	ci left: 9.263182e-04	ci right 1.266773e-03	k: 163	n:150000
NUCB2   150000 perm   36 sec   (4183 perm/sec)   p_kst 1.086667e-03   p_cons 5.828200e-01   p_joint 3.606667e-03

Joint ci ratio: 1.418548e-01	ci left: 4.412946e-03	ci right 5.092691e-03	k: 759	n:160000
Cons ci ratio: 8.289304e-03	ci left: 5.805106e-01	ci right 5.853489e-01	k: 93269	n:160000
KS ci ratio: 2.953176e-01	ci left: 9.377694e-04	ci right 1.268237e-03	k: 175	n:160000
NUCB2   160000 perm   39 sec   (4127 perm/sec)   p_kst 1.093750e-03   p_cons 5.829313e-01   p_joint 4.743750e-03

Joint ci ratio: 1.396764e-01	ci left: 4.289546e-03	ci right 4.939291e-03	k: 783	n:170000
Cons ci ratio: 8.044078e-03	ci left: 5.804458e-01	ci right 5.851396e-01	k: 99075	n:170000
KS ci ratio: 2.880464e-01	ci left: 9.316746e-04	ci right 1.250439e-03	k: 184	n:170000
NUCB2   170000 perm   42 sec   (4062 perm/sec)   p_kst 1.082353e-03   p_cons 5.827941e-01   p_joint 4.605882e-03

Joint ci ratio: 1.378522e-01	ci left: 4.163835e-03	ci right 4.785624e-03	k: 804	n:180000
Cons ci ratio: 7.818955e-03	ci left: 5.804179e-01	ci right 5.849795e-01	k: 104886	n:180000
KS ci ratio: 2.812871e-01	ci left: 9.263455e-04	ci right 1.234531e-03	k: 193	n:180000
NUCB2   180000 perm   45 sec   (3997 perm/sec)   p_kst 1.072222e-03   p_cons 5.827000e-01   p_joint 4.466667e-03

Joint ci ratio: 1.372704e-01	ci left: 3.980234e-03	ci right 4.571890e-03	k: 811	n:190000
Cons ci ratio: 7.606297e-03	ci left: 5.807422e-01	ci right 5.851816e-01	k: 110763	n:190000
KS ci ratio: 2.749823e-01	ci left: 9.216554e-04	ci right 1.220220e-03	k: 202	n:190000
NUCB2   190000 perm   48 sec   (3940 perm/sec)   p_kst 1.063158e-03   p_cons 5.829632e-01   p_joint 4.268421e-03

Joint ci ratio: 1.472702e-01	ci left: 3.269974e-03	ci right 3.794578e-03	k: 705	n:200000
Cons ci ratio: 7.401637e-03	ci left: 5.815910e-01	ci right 5.859166e-01	k: 116751	n:200000
KS ci ratio: 2.684502e-01	ci left: 9.221669e-04	ci right 1.212606e-03	k: 212	n:200000
NUCB2   200000 perm   51 sec   (3884 perm/sec)   p_kst 1.060000e-03   p_cons 5.837550e-01   p_joint 3.525000e-03

Joint ci ratio: 1.432659e-01	ci left: 3.297818e-03	ci right 3.811274e-03	k: 745	n:210000
Cons ci ratio: 7.217992e-03	ci left: 5.819980e-01	ci right 5.862188e-01	k: 122663	n:210000
KS ci ratio: 2.594668e-01	ci left: 9.449593e-04	ci right 1.231004e-03	k: 227	n:210000
NUCB2   210000 perm   55 sec   (3829 perm/sec)   p_kst 1.080952e-03   p_cons 5.841095e-01   p_joint 3.547619e-03

Joint ci ratio: 1.471894e-01	ci left: 2.977048e-03	ci right 3.454371e-03	k: 706	n:220000
Cons ci ratio: 7.051123e-03	ci left: 5.821098e-01	ci right 5.862334e-01	k: 128518	n:220000
KS ci ratio: 2.513286e-01	ci left: 9.658264e-04	ci right 1.247584e-03	k: 242	n:220000
NUCB2   220000 perm   58 sec   (3775 perm/sec)   p_kst 1.100000e-03   p_cons 5.841727e-01   p_joint 3.209091e-03

Joint ci ratio: 1.271875e-01	ci left: 3.851366e-03	ci right 4.378643e-03	k: 945	n:230000
Cons ci ratio: 7.016423e-03	ci left: 5.737249e-01	ci right 5.777689e-01	k: 132422	n:230000
KS ci ratio: 2.439111e-01	ci left: 9.850066e-04	ci right 1.262595e-03	k: 257	n:230000
NUCB2   230000 perm   62 sec   (3725 perm/sec)   p_kst 1.117391e-03   p_cons 5.757478e-01   p_joint 4.108696e-03

Joint ci ratio: 1.297715e-01	ci left: 3.541643e-03	ci right 4.037126e-03	k: 908	n:240000
Cons ci ratio: 6.869894e-03	ci left: 5.736822e-01	ci right 5.776410e-01	k: 138159	n:240000
KS ci ratio: 2.371137e-01	ci left: 1.002700e-03	ci right 1.276244e-03	k: 272	n:240000
NUCB2   240000 perm   65 sec   (3670 perm/sec)   p_kst 1.133333e-03   p_cons 5.756625e-01   p_joint 3.783333e-03

Joint ci ratio: 1.292827e-01	ci left: 3.427057e-03	ci right 3.904564e-03	k: 915	n:250000
Cons ci ratio: 6.730358e-03	ci left: 5.737758e-01	ci right 5.776545e-01	k: 143929	n:250000
KS ci ratio: 2.316614e-01	ci left: 1.011539e-03	ci right 1.280241e-03	k: 285	n:250000
NUCB2   250000 perm   69 sec   (3623 perm/sec)   p_kst 1.140000e-03   p_cons 5.757160e-01   p_joint 3.660000e-03

Joint ci ratio: 1.284502e-01	ci left: 3.339903e-03	ci right 3.802041e-03	k: 927	n:260000
Cons ci ratio: 6.600760e-03	ci left: 5.737321e-01	ci right 5.775355e-01	k: 149665	n:260000
KS ci ratio: 2.269489e-01	ci left: 1.016137e-03	ci right 1.279801e-03	k: 297	n:260000
NUCB2   260000 perm   73 sec   (3579 perm/sec)   p_kst 1.142308e-03   p_cons 5.756346e-01   p_joint 3.565385e-03

Joint ci ratio: 1.313298e-01	ci left: 3.072840e-03	ci right 3.508300e-03	k: 887	n:270000
Cons ci ratio: 6.472676e-03	ci left: 5.741222e-01	ci right 5.778540e-01	k: 155517	n:270000
KS ci ratio: 2.254440e-01	ci left: 9.924764e-04	ci right 1.248056e-03	k: 301	n:270000
NUCB2   270000 perm   76 sec   (3534 perm/sec)   p_kst 1.114815e-03   p_cons 5.759889e-01   p_joint 3.285185e-03

Joint ci ratio: 1.289556e-01	ci left: 3.077117e-03	ci right 3.504695e-03	k: 920	n:280000
Cons ci ratio: 6.359384e-03	ci left: 5.738990e-01	ci right 5.775638e-01	k: 161205	n:280000
KS ci ratio: 2.218022e-01	ci left: 9.907446e-04	ci right 1.241194e-03	k: 311	n:280000
NUCB2   280000 perm   80 sec   (3488 perm/sec)   p_kst 1.110714e-03   p_cons 5.757321e-01   p_joint 3.285714e-03

Joint ci ratio: 1.265061e-01	ci left: 3.091182e-03	ci right 3.511944e-03	k: 956	n:290000
Cons ci ratio: 6.249895e-03	ci left: 5.738435e-01	ci right 5.774446e-01	k: 166937	n:290000
KS ci ratio: 2.179928e-01	ci left: 9.924231e-04	ci right 1.238411e-03	k: 322	n:290000
NUCB2   290000 perm   84 sec   (3443 perm/sec)   p_kst 1.110345e-03   p_cons 5.756448e-01   p_joint 3.296552e-03

Joint ci ratio: 1.245061e-01	ci left: 3.088231e-03	ci right 3.501456e-03	k: 987	n:300000
Cons ci ratio: 6.140215e-03	ci left: 5.742425e-01	ci right 5.777827e-01	k: 172804	n:300000
KS ci ratio: 2.130994e-01	ci left: 1.006644e-03	ci right 1.249825e-03	k: 337	n:300000
NUCB2   300000 perm   88 sec   (3399 perm/sec)   p_kst 1.123333e-03   p_cons 5.760133e-01   p_joint 3.290000e-03

Joint ci ratio: 1.242606e-01	ci left: 3.001104e-03	ci right 3.401820e-03	k: 991	n:310000
Cons ci ratio: 6.040812e-03	ci left: 5.742354e-01	ci right 5.777180e-01	k: 178553	n:310000
KS ci ratio: 2.109279e-01	ci left: 9.955530e-04	ci right 1.233286e-03	k: 344	n:310000
NUCB2   310000 perm   92 sec   (3357 perm/sec)   p_kst 1.109677e-03   p_cons 5.759774e-01   p_joint 3.196774e-03

Joint ci ratio: 1.234580e-01	ci left: 2.946681e-03	ci right 3.337403e-03	k: 1004	n:320000
Cons ci ratio: 5.945515e-03	ci left: 5.742761e-01	ci right 5.777037e-01	k: 184317	n:320000
KS ci ratio: 2.088214e-01	ci left: 9.851667e-04	ci right 1.217770e-03	k: 351	n:320000
NUCB2   320000 perm   97 sec   (3316 perm/sec)   p_kst 1.096875e-03   p_cons 5.759906e-01   p_joint 3.137500e-03

Joint ci ratio: 1.221900e-01	ci left: 2.919066e-03	ci right 3.301863e-03	k: 1025	n:330000
Cons ci ratio: 5.855099e-03	ci left: 5.742723e-01	ci right 5.776476e-01	k: 190067	n:330000
KS ci ratio: 2.064891e-01	ci left: 9.782946e-04	ci right 1.206370e-03	k: 359	n:330000
NUCB2   330000 perm   101 sec   (3272 perm/sec)   p_kst 1.087879e-03   p_cons 5.759606e-01   p_joint 3.106061e-03

Joint ci ratio: 1.212509e-01	ci left: 2.878833e-03	ci right 3.253245e-03	k: 1041	n:340000
Cons ci ratio: 5.768374e-03	ci left: 5.742956e-01	ci right 5.776208e-01	k: 195826	n:340000
KS ci ratio: 2.039560e-01	ci left: 9.746314e-04	ci right 1.198718e-03	k: 368	n:340000
NUCB2   340000 perm   105 sec   (3233 perm/sec)   p_kst 1.082353e-03   p_cons 5.759588e-01   p_joint 3.061765e-03

Joint ci ratio: 1.263436e-01	ci left: 2.569522e-03	ci right 2.918792e-03	k: 959	n:350000
Cons ci ratio: 5.687221e-03	ci left: 5.741606e-01	ci right 5.774381e-01	k: 201530	n:350000
KS ci ratio: 2.023192e-01	ci left: 9.630551e-04	ci right 1.182483e-03	k: 374	n:350000
NUCB2   350000 perm   109 sec   (3197 perm/sec)   p_kst 1.068571e-03   p_cons 5.758000e-01   p_joint 2.740000e-03

Joint ci ratio: 1.247304e-01	ci left: 2.565409e-03	ci right 2.909339e-03	k: 984	n:360000
Cons ci ratio: 5.606113e-03	ci left: 5.743198e-01	ci right 5.775512e-01	k: 207337	n:360000
KS ci ratio: 1.999347e-01	ci left: 9.600444e-04	ci right 1.175894e-03	k: 383	n:360000
NUCB2   360000 perm   114 sec   (3162 perm/sec)   p_kst 1.063889e-03   p_cons 5.759361e-01   p_joint 2.733333e-03

Joint ci ratio: 1.270180e-01	ci left: 2.404445e-03	ci right 2.733152e-03	k: 949	n:370000
Cons ci ratio: 5.532204e-03	ci left: 5.741326e-01	ci right 5.773203e-01	k: 213019	n:370000
KS ci ratio: 1.971310e-01	ci left: 9.623493e-04	ci right 1.175318e-03	k: 394	n:370000
NUCB2   370000 perm   118 sec   (3128 perm/sec)   p_kst 1.064865e-03   p_cons 5.757270e-01   p_joint 2.564865e-03

Joint ci ratio: 1.259634e-01	ci left: 2.381941e-03	ci right 2.704666e-03	k: 965	n:380000
Cons ci ratio: 5.455260e-03	ci left: 5.744821e-01	ci right 5.776272e-01	k: 218901	n:380000
KS ci ratio: 1.944421e-01	ci left: 9.645529e-04	ci right 1.174753e-03	k: 405	n:380000
NUCB2   380000 perm   123 sec   (3096 perm/sec)   p_kst 1.065789e-03   p_cons 5.760553e-01   p_joint 2.539474e-03

Joint ci ratio: 1.246168e-01	ci left: 2.373024e-03	ci right 2.690850e-03	k: 986	n:390000
Cons ci ratio: 5.385787e-03	ci left: 5.744189e-01	ci right 5.775235e-01	k: 224629	n:390000
KS ci ratio: 1.916304e-01	ci left: 9.691032e-04	ci right 1.176886e-03	k: 417	n:390000
NUCB2   390000 perm   127 sec   (3064 perm/sec)   p_kst 1.069231e-03   p_cons 5.759718e-01   p_joint 2.528205e-03

Joint ci ratio: 1.232513e-01	ci left: 2.366992e-03	ci right 2.680283e-03	k: 1008	n:400000
Cons ci ratio: 5.318032e-03	ci left: 5.744392e-01	ci right 5.775047e-01	k: 230389	n:400000
KS ci ratio: 1.891576e-01	ci left: 9.710650e-04	ci right 1.176273e-03	k: 428	n:400000
NUCB2   400000 perm   132 sec   (3031 perm/sec)   p_kst 1.070000e-03   p_cons 5.759725e-01   p_joint 2.520000e-03

Joint ci ratio: 1.227077e-01	ci left: 2.330534e-03	ci right 2.637540e-03	k: 1017	n:410000
Cons ci ratio: 5.252613e-03	ci left: 5.744734e-01	ci right 5.775012e-01	k: 236155	n:410000
KS ci ratio: 1.882834e-01	ci left: 9.566750e-04	ci right 1.157800e-03	k: 432	n:410000
NUCB2   410000 perm   137 sec   (3001 perm/sec)   p_kst 1.053659e-03   p_cons 5.759878e-01   p_joint 2.480488e-03

Joint ci ratio: 1.213448e-01	ci left: 2.328135e-03	ci right 2.631174e-03	k: 1040	n:420000
Cons ci ratio: 5.190386e-03	ci left: 5.744275e-01	ci right 5.774191e-01	k: 241888	n:420000
KS ci ratio: 1.861464e-01	ci left: 9.565906e-04	ci right 1.155158e-03	k: 442	n:420000
NUCB2   420000 perm   141 sec   (2972 perm/sec)   p_kst 1.052381e-03   p_cons 5.759238e-01   p_joint 2.476190e-03

Joint ci ratio: 1.243792e-01	ci left: 2.161275e-03	ci right 2.450148e-03	k: 990	n:430000
Cons ci ratio: 5.129293e-03	ci left: 5.744817e-01	ci right 5.774382e-01	k: 247663	n:430000
KS ci ratio: 1.846936e-01	ci left: 9.498675e-04	ci right 1.145328e-03	k: 449	n:430000
NUCB2   430000 perm   146 sec   (2943 perm/sec)   p_kst 1.044186e-03   p_cons 5.759605e-01   p_joint 2.302326e-03

Joint ci ratio: 1.255950e-01	ci left: 2.070317e-03	ci right 2.349939e-03	k: 971	n:440000
Cons ci ratio: 5.070472e-03	ci left: 5.745177e-01	ci right 5.774404e-01	k: 253431	n:440000
KS ci ratio: 1.822789e-01	ci left: 9.542999e-04	ci right 1.147822e-03	k: 461	n:440000
NUCB2   440000 perm   151 sec   (2915 perm/sec)   p_kst 1.047727e-03   p_cons 5.759795e-01   p_joint 2.206818e-03

Joint ci ratio: 1.235759e-01	ci left: 2.093207e-03	ci right 2.371042e-03	k: 1003	n:450000
Cons ci ratio: 5.014383e-03	ci left: 5.744789e-01	ci right 5.773690e-01	k: 259166	n:450000
KS ci ratio: 1.799565e-01	ci left: 9.585511e-04	ci right 1.150189e-03	k: 473	n:450000
NUCB2   450000 perm   156 sec   (2887 perm/sec)   p_kst 1.051111e-03   p_cons 5.759244e-01   p_joint 2.228889e-03

Joint ci ratio: 1.221842e-01	ci left: 2.096166e-03	ci right 2.371034e-03	k: 1026	n:460000
Cons ci ratio: 4.960490e-03	ci left: 5.744050e-01	ci right 5.772636e-01	k: 264884	n:460000
KS ci ratio: 1.782723e-01	ci left: 9.564010e-04	ci right 1.145626e-03	k: 482	n:460000
NUCB2   460000 perm   161 sec   (2861 perm/sec)   p_kst 1.047826e-03   p_cons 5.758348e-01   p_joint 2.230435e-03

Joint ci ratio: 1.206085e-01	ci left: 2.107269e-03	ci right 2.379776e-03	k: 1053	n:470000
Cons ci ratio: 4.908897e-03	ci left: 5.742749e-01	ci right 5.771029e-01	k: 270574	n:470000
KS ci ratio: 1.752143e-01	ci left: 9.706228e-04	ci right 1.159019e-03	k: 499	n:470000
NUCB2   470000 perm   166 sec   (2833 perm/sec)   p_kst 1.061702e-03   p_cons 5.756894e-01   p_joint 2.240426e-03

Joint ci ratio: 1.194248e-01	ci left: 2.105804e-03	ci right 2.375260e-03	k: 1074	n:480000
Cons ci ratio: 4.857574e-03	ci left: 5.742816e-01	ci right 5.770800e-01	k: 276327	n:480000
KS ci ratio: 1.738296e-01	ci left: 9.663400e-04	ci right 1.152267e-03	k: 507	n:480000
NUCB2   480000 perm   171 sec   (2807 perm/sec)   p_kst 1.056250e-03   p_cons 5.756813e-01   p_joint 2.237500e-03

Joint ci ratio: 1.091678e-01	ci left: 2.481180e-03	ci right 2.769649e-03	k: 1285	n:490000
Cons ci ratio: 4.806885e-03	ci left: 5.743841e-01	ci right 5.771538e-01	k: 282127	n:490000
KS ci ratio: 1.713180e-01	ci left: 9.759092e-04	ci right 1.160684e-03	k: 522	n:490000
NUCB2   490000 perm   176 sec   (2781 perm/sec)   p_kst 1.065306e-03   p_cons 5.757694e-01   p_joint 2.622449e-03

Joint ci ratio: 1.213690e-01	ci left: 1.955611e-03	ci right 2.210214e-03	k: 1040	n:500000
Cons ci ratio: 4.507768e-03	ci left: 6.006216e-01	ci right 6.033372e-01	k: 300990	n:500000
KS ci ratio: 1.687552e-01	ci left: 9.870298e-04	ci right 1.170830e-03	k: 538	n:500000
NUCB2   500000 perm   181 sec   (2755 perm/sec)   p_kst 1.076000e-03   p_cons 6.019800e-01   p_joint 2.080000e-03

Joint ci ratio: 1.086244e-01	ci left: 2.408670e-03	ci right 2.687226e-03	k: 1298	n:510000
Cons ci ratio: 4.462147e-03	ci left: 6.007649e-01	ci right 6.034535e-01	k: 307076	n:510000
KS ci ratio: 1.667558e-01	ci left: 9.920965e-04	ci right 1.174432e-03	k: 551	n:510000
NUCB2   510000 perm   187 sec   (2730 perm/sec)   p_kst 1.080392e-03   p_cons 6.021098e-01   p_joint 2.545098e-03

Joint ci ratio: 9.511501e-02	ci left: 3.100870e-03	ci right 3.412398e-03	k: 1692	n:520000
Cons ci ratio: 4.418627e-03	ci left: 6.008220e-01	ci right 6.034846e-01	k: 313120	n:520000
KS ci ratio: 1.657090e-01	ci left: 9.859190e-04	ci right 1.165868e-03	k: 558	n:520000
NUCB2   520000 perm   192 sec   (2705 perm/sec)   p_kst 1.073077e-03   p_cons 6.021538e-01   p_joint 3.253846e-03

Joint ci ratio: 9.551494e-02	ci left: 3.016571e-03	ci right 3.320975e-03	k: 1678	n:530000
Cons ci ratio: 4.376787e-03	ci left: 6.008298e-01	ci right 6.034672e-01	k: 319139	n:530000
KS ci ratio: 1.642466e-01	ci left: 9.854056e-04	ci right 1.163517e-03	k: 568	n:530000
NUCB2   530000 perm   198 sec   (2680 perm/sec)   p_kst 1.071698e-03   p_cons 6.021491e-01   p_joint 3.166038e-03

Joint ci ratio: 9.467304e-02	ci left: 3.014943e-03	ci right 3.316352e-03	k: 1708	n:540000
Cons ci ratio: 4.336868e-03	ci left: 6.007541e-01	ci right 6.033670e-01	k: 325113	n:540000
KS ci ratio: 1.631044e-01	ci left: 9.813652e-04	ci right 1.157392e-03	k: 576	n:540000
NUCB2   540000 perm   203 sec   (2655 perm/sec)   p_kst 1.066667e-03   p_cons 6.020611e-01   p_joint 3.162963e-03

Joint ci ratio: 9.385301e-02	ci left: 3.013385e-03	ci right 3.311886e-03	k: 1738	n:550000
Cons ci ratio: 4.298331e-03	ci left: 6.006467e-01	ci right 6.032358e-01	k: 331068	n:550000
KS ci ratio: 1.621245e-01	ci left: 9.757313e-04	ci right 1.149593e-03	k: 583	n:550000
NUCB2   550000 perm   209 sec   (2631 perm/sec)   p_kst 1.060000e-03   p_cons 6.019418e-01   p_joint 3.160000e-03

Joint ci ratio: 9.978581e-02	ci left: 2.611044e-03	ci right 2.886997e-03	k: 1538	n:560000
Cons ci ratio: 4.259390e-03	ci left: 6.007023e-01	ci right 6.032681e-01	k: 337112	n:560000
KS ci ratio: 1.603492e-01	ci left: 9.805853e-04	ci right 1.153215e-03	k: 596	n:560000
NUCB2   560000 perm   215 sec   (2608 perm/sec)   p_kst 1.064286e-03   p_cons 6.019857e-01   p_joint 2.746429e-03

Joint ci ratio: 1.008450e-01	ci left: 2.510498e-03	ci right 2.778807e-03	k: 1506	n:570000
Cons ci ratio: 4.221288e-03	ci left: 6.007788e-01	ci right 6.033219e-01	k: 343169	n:570000
KS ci ratio: 1.590230e-01	ci left: 9.802248e-04	ci right 1.151227e-03	k: 606	n:570000
NUCB2   570000 perm   220 sec   (2585 perm/sec)   p_kst 1.063158e-03   p_cons 6.020509e-01   p_joint 2.642105e-03

Joint ci ratio: 1.004803e-01	ci left: 2.485700e-03	ci right 2.750342e-03	k: 1517	n:580000
Cons ci ratio: 4.184491e-03	ci left: 6.008183e-01	ci right 6.033393e-01	k: 349206	n:580000
KS ci ratio: 1.583729e-01	ci left: 9.716024e-04	ci right 1.140342e-03	k: 611	n:580000
NUCB2   580000 perm   226 sec   (2564 perm/sec)   p_kst 1.053448e-03   p_cons 6.020793e-01   p_joint 2.615517e-03

Joint ci ratio: 9.982533e-02	ci left: 2.476618e-03	ci right 2.738473e-03	k: 1537	n:590000
Cons ci ratio: 4.149345e-03	ci left: 6.007751e-01	ci right 6.032748e-01	k: 355195	n:590000
KS ci ratio: 1.573481e-01	ci left: 9.681581e-04	ci right 1.135109e-03	k: 619	n:590000
NUCB2   590000 perm   232 sec   (2541 perm/sec)   p_kst 1.049153e-03   p_cons 6.020254e-01   p_joint 2.605085e-03

Joint ci ratio: 1.008516e-01	ci left: 2.384965e-03	ci right 2.639876e-03	k: 1506	n:600000
Cons ci ratio: 4.114210e-03	ci left: 6.008335e-01	ci right 6.033122e-01	k: 361244	n:600000
KS ci ratio: 1.562186e-01	ci left: 9.664336e-04	ci right 1.131778e-03	k: 628	n:600000
NUCB2   600000 perm   238 sec   (2520 perm/sec)   p_kst 1.046667e-03   p_cons 6.020733e-01   p_joint 2.510000e-03

Joint ci ratio: 1.000254e-01	ci left: 2.385822e-03	ci right 2.638612e-03	k: 1531	n:610000
Cons ci ratio: 4.080163e-03	ci left: 6.008655e-01	ci right 6.033237e-01	k: 367278	n:610000
KS ci ratio: 1.549914e-01	ci left: 9.663455e-04	ci right 1.130256e-03	k: 638	n:610000
NUCB2   610000 perm   244 sec   (2498 perm/sec)   p_kst 1.045902e-03   p_cons 6.020951e-01   p_joint 2.509836e-03

Joint ci ratio: 1.006551e-01	ci left: 2.317461e-03	ci right 2.564645e-03	k: 1512	n:620000
Cons ci ratio: 4.047138e-03	ci left: 6.008739e-01	ci right 6.033122e-01	k: 373298	n:620000
KS ci ratio: 1.533205e-01	ci left: 9.724692e-04	ci right 1.135477e-03	k: 652	n:620000
NUCB2   620000 perm   250 sec   (2476 perm/sec)   p_kst 1.051613e-03   p_cons 6.020935e-01   p_joint 2.438710e-03

Joint ci ratio: 9.947763e-02	ci left: 2.336389e-03	ci right 2.582507e-03	k: 1548	n:630000
Cons ci ratio: 4.014409e-03	ci left: 6.009409e-01	ci right 6.033597e-01	k: 379355	n:630000
KS ci ratio: 1.519307e-01	ci left: 9.753534e-04	ci right 1.137227e-03	k: 664	n:630000
NUCB2   630000 perm   257 sec   (2455 perm/sec)   p_kst 1.053968e-03   p_cons 6.021508e-01   p_joint 2.457143e-03

Joint ci ratio: 9.999859e-02	ci left: 2.275503e-03	ci right 2.516536e-03	k: 1532	n:640000
Cons ci ratio: 3.982424e-03	ci left: 6.010106e-01	ci right 6.034104e-01	k: 385415	n:640000
KS ci ratio: 1.506895e-01	ci left: 9.766504e-04	ci right 1.137296e-03	k: 675	n:640000
NUCB2   640000 perm   263 sec   (2434 perm/sec)   p_kst 1.054688e-03   p_cons 6.022109e-01   p_joint 2.393750e-03

Joint ci ratio: 8.854615e-02	ci left: 2.873010e-03	ci right 3.140681e-03	k: 1953	n:650000
Cons ci ratio: 3.951799e-03	ci left: 6.010043e-01	ci right 6.033856e-01	k: 391427	n:650000
KS ci ratio: 1.496964e-01	ci left: 9.749507e-04	ci right 1.134165e-03	k: 684	n:650000
NUCB2   650000 perm   269 sec   (2414 perm/sec)   p_kst 1.052308e-03   p_cons 6.021954e-01   p_joint 3.004615e-03

Joint ci ratio: 8.859366e-02	ci left: 2.826513e-03	ci right 3.090001e-03	k: 1951	n:660000
Cons ci ratio: 3.921585e-03	ci left: 6.010331e-01	ci right 6.033963e-01	k: 397462	n:660000
KS ci ratio: 1.490456e-01	ci left: 9.689296e-04	ci right 1.126412e-03	k: 690	n:660000
NUCB2   660000 perm   276 sec   (2392 perm/sec)   p_kst 1.045455e-03   p_cons 6.022152e-01   p_joint 2.956061e-03

Joint ci ratio: 8.947332e-02	ci left: 2.728867e-03	ci right 2.985909e-03	k: 1913	n:670000
Cons ci ratio: 3.892066e-03	ci left: 6.010597e-01	ci right 6.034051e-01	k: 403496	n:670000
KS ci ratio: 1.476628e-01	ci left: 9.731509e-04	ci right 1.129722e-03	k: 703	n:670000
NUCB2   670000 perm   282 sec   (2373 perm/sec)   p_kst 1.049254e-03   p_cons 6.022328e-01   p_joint 2.855224e-03

Joint ci ratio: 8.884894e-02	ci left: 2.727557e-03	ci right 2.982590e-03	k: 1940	n:680000
Cons ci ratio: 3.863109e-03	ci left: 6.010973e-01	ci right 6.034253e-01	k: 409538	n:680000
KS ci ratio: 1.465225e-01	ci left: 9.744210e-04	ci right 1.129880e-03	k: 714	n:680000
NUCB2   680000 perm   289 sec   (2354 perm/sec)   p_kst 1.050000e-03   p_cons 6.022618e-01   p_joint 2.852941e-03

Joint ci ratio: 9.393739e-02	ci left: 2.399108e-03	ci right 2.636984e-03	k: 1736	n:690000
Cons ci ratio: 3.835426e-03	ci left: 6.010541e-01	ci right 6.033653e-01	k: 415525	n:690000
KS ci ratio: 1.452081e-01	ci left: 9.784521e-04	ci right 1.133032e-03	k: 727	n:690000
NUCB2   690000 perm   295 sec   (2335 perm/sec)   p_kst 1.053623e-03   p_cons 6.022101e-01   p_joint 2.515942e-03

Joint ci ratio: 9.340156e-02	ci left: 2.392737e-03	ci right 2.628553e-03	k: 1756	n:700000
Cons ci ratio: 3.807683e-03	ci left: 6.010937e-01	ci right 6.033883e-01	k: 421569	n:700000
KS ci ratio: 1.444170e-01	ci left: 9.754886e-04	ci right 1.128689e-03	k: 735	n:700000
NUCB2   700000 perm   302 sec   (2317 perm/sec)   p_kst 1.050000e-03   p_cons 6.022414e-01   p_joint 2.508571e-03

Joint ci ratio: 9.266592e-02	ci left: 2.397555e-03	ci right 2.631885e-03	k: 1784	n:710000
Cons ci ratio: 3.779834e-03	ci left: 6.012211e-01	ci right 6.034992e-01	k: 427676	n:710000
KS ci ratio: 1.436388e-01	ci left: 9.726108e-04	ci right 1.124465e-03	k: 743	n:710000
NUCB2   710000 perm   309 sec   (2300 perm/sec)   p_kst 1.046479e-03   p_cons 6.023606e-01   p_joint 2.512676e-03

Joint ci ratio: 9.202375e-02	ci left: 2.398176e-03	ci right 2.630855e-03	k: 1809	n:720000
Cons ci ratio: 3.753445e-03	ci left: 6.012351e-01	ci right 6.034974e-01	k: 433704	n:720000
KS ci ratio: 1.424941e-01	ci left: 9.751725e-04	ci right 1.126110e-03	k: 755	n:720000
NUCB2   720000 perm   315 sec   (2282 perm/sec)   p_kst 1.048611e-03   p_cons 6.023667e-01   p_joint 2.512500e-03

Joint ci ratio: 9.172103e-02	ci left: 2.381384e-03	ci right 2.611633e-03	k: 1821	n:730000
Cons ci ratio: 3.727421e-03	ci left: 6.012721e-01	ci right 6.035188e-01	k: 439749	n:730000
KS ci ratio: 1.417463e-01	ci left: 9.723831e-04	ci right 1.122033e-03	k: 763	n:730000
NUCB2   730000 perm   322 sec   (2265 perm/sec)   p_kst 1.045205e-03   p_cons 6.023959e-01   p_joint 2.494521e-03

Joint ci ratio: 9.127172e-02	ci left: 2.372971e-03	ci right 2.601222e-03	k: 1839	n:740000
Cons ci ratio: 3.701607e-03	ci left: 6.013501e-01	ci right 6.035815e-01	k: 445825	n:740000
KS ci ratio: 1.408277e-01	ci left: 9.722786e-04	ci right 1.120861e-03	k: 773	n:740000
NUCB2   740000 perm   329 sec   (2247 perm/sec)   p_kst 1.044595e-03   p_cons 6.024662e-01   p_joint 2.485135e-03

Joint ci ratio: 9.060922e-02	ci left: 2.376513e-03	ci right 2.603357e-03	k: 1866	n:750000
Cons ci ratio: 3.677232e-03	ci left: 6.013073e-01	ci right 6.035239e-01	k: 451812	n:750000
KS ci ratio: 1.395707e-01	ci left: 9.773270e-04	ci right 1.125237e-03	k: 787	n:750000
NUCB2   750000 perm   336 sec   (2230 perm/sec)   p_kst 1.049333e-03   p_cons 6.024160e-01   p_joint 2.488000e-03

Joint ci ratio: 9.032019e-02	ci left: 2.360674e-03	ci right 2.585250e-03	k: 1878	n:760000
Cons ci ratio: 3.653232e-03	ci left: 6.012789e-01	ci right 6.034808e-01	k: 457809	n:760000
KS ci ratio: 1.386935e-01	ci left: 9.771673e-04	ci right 1.124047e-03	k: 797	n:760000
NUCB2   760000 perm   343 sec   (2214 perm/sec)   p_kst 1.048684e-03   p_cons 6.023803e-01   p_joint 2.471053e-03

Joint ci ratio: 9.068522e-02	ci left: 2.310974e-03	ci right 2.531757e-03	k: 1863	n:770000
Cons ci ratio: 3.628948e-03	ci left: 6.013500e-01	ci right 6.035375e-01	k: 463882	n:770000
KS ci ratio: 1.374077e-01	ci left: 9.832847e-04	ci right 1.129601e-03	k: 812	n:770000
NUCB2   770000 perm   350 sec   (2197 perm/sec)   p_kst 1.054545e-03   p_cons 6.024442e-01   p_joint 2.419481e-03

Joint ci ratio: 9.063791e-02	ci left: 2.283850e-03	ci right 2.501923e-03	k: 1865	n:780000
Cons ci ratio: 3.605933e-03	ci left: 6.013142e-01	ci right 6.034876e-01	k: 469873	n:780000
KS ci ratio: 1.365704e-01	ci left: 9.830596e-04	ci right 1.128379e-03	k: 822	n:780000
NUCB2   780000 perm   358 sec   (2180 perm/sec)   p_kst 1.053846e-03   p_cons 6.024013e-01   p_joint 2.391026e-03

Joint ci ratio: 9.046935e-02	ci left: 2.263600e-03	ci right 2.479315e-03	k: 1872	n:790000
Cons ci ratio: 3.583219e-03	ci left: 6.012970e-01	ci right 6.034567e-01	k: 475878	n:790000
KS ci ratio: 1.355042e-01	ci left: 9.865116e-04	ci right 1.131111e-03	k: 835	n:790000
NUCB2   790000 perm   365 sec   (2164 perm/sec)   p_kst 1.056962e-03   p_cons 6.023772e-01   p_joint 2.369620e-03

Joint ci ratio: 8.114375e-02	ci left: 2.790692e-03	ci right 3.027930e-03	k: 2326	n:800000
Cons ci ratio: 3.561206e-03	ci left: 6.012428e-01	ci right 6.033890e-01	k: 481853	n:800000
KS ci ratio: 1.345419e-01	ci left: 9.886736e-04	ci right 1.132478e-03	k: 847	n:800000
NUCB2   800000 perm   372 sec   (2148 perm/sec)   p_kst 1.058750e-03   p_cons 6.023162e-01   p_joint 2.907500e-03

Joint ci ratio: 8.078047e-02	ci left: 2.781640e-03	ci right 3.017000e-03	k: 2347	n:810000
Cons ci ratio: 3.538555e-03	ci left: 6.013308e-01	ci right 6.034636e-01	k: 487942	n:810000
KS ci ratio: 1.339119e-01	ci left: 9.860125e-04	ci right 1.128705e-03	k: 855	n:810000
NUCB2   810000 perm   380 sec   (2132 perm/sec)   p_kst 1.055556e-03   p_cons 6.023975e-01   p_joint 2.897531e-03

Joint ci ratio: 8.074742e-02	ci left: 2.750105e-03	ci right 2.982697e-03	k: 2349	n:820000
Cons ci ratio: 3.516214e-03	ci left: 6.014325e-01	ci right 6.035522e-01	k: 494044	n:820000
KS ci ratio: 1.332136e-01	ci left: 9.845968e-04	ci right 1.126283e-03	k: 864	n:820000
NUCB2   820000 perm   387 sec   (2117 perm/sec)   p_kst 1.053659e-03   p_cons 6.024927e-01   p_joint 2.864634e-03

Joint ci ratio: 8.016930e-02	ci left: 2.757111e-03	ci right 2.988548e-03	k: 2383	n:830000
Cons ci ratio: 3.495433e-03	ci left: 6.013751e-01	ci right 6.034820e-01	k: 500016	n:830000
KS ci ratio: 1.324502e-01	ci left: 9.843820e-04	ci right 1.125162e-03	k: 874	n:830000
NUCB2   830000 perm   395 sec   (2103 perm/sec)   p_kst 1.053012e-03   p_cons 6.024289e-01   p_joint 2.871084e-03

Joint ci ratio: 7.955393e-02	ci left: 2.767457e-03	ci right 2.997897e-03	k: 2420	n:840000
Cons ci ratio: 3.474455e-03	ci left: 6.013965e-01	ci right 6.034909e-01	k: 506053	n:840000
KS ci ratio: 1.317744e-01	ci left: 9.830233e-04	ci right 1.122835e-03	k: 883	n:840000
NUCB2   840000 perm   402 sec   (2088 perm/sec)   p_kst 1.051190e-03   p_cons 6.024440e-01   p_joint 2.880952e-03

Joint ci ratio: 7.904934e-02	ci left: 2.770646e-03	ci right 2.999821e-03	k: 2451	n:850000
Cons ci ratio: 3.453884e-03	ci left: 6.014128e-01	ci right 6.034947e-01	k: 512086	n:850000
KS ci ratio: 1.311823e-01	ci left: 9.805605e-04	ci right 1.119346e-03	k: 891	n:850000
NUCB2   850000 perm   410 sec   (2072 perm/sec)   p_kst 1.048235e-03   p_cons 6.024541e-01   p_joint 2.883529e-03

Joint ci ratio: 7.980492e-02	ci left: 2.685999e-03	ci right 2.910394e-03	k: 2405	n:860000
Cons ci ratio: 3.433757e-03	ci left: 6.014171e-01	ci right 6.034869e-01	k: 518109	n:860000
KS ci ratio: 1.300210e-01	ci left: 9.871556e-04	ci right 1.125543e-03	k: 907	n:860000
NUCB2   860000 perm   418 sec   (2058 perm/sec)   p_kst 1.054651e-03   p_cons 6.024523e-01   p_joint 2.796512e-03

Joint ci ratio: 7.937727e-02	ci left: 2.684415e-03	ci right 2.907421e-03	k: 2431	n:870000
Cons ci ratio: 3.414314e-03	ci left: 6.013742e-01	ci right 6.034321e-01	k: 524091	n:870000
KS ci ratio: 1.293109e-01	ci left: 9.869304e-04	ci right 1.124472e-03	k: 917	n:870000
NUCB2   870000 perm   426 sec   (2044 perm/sec)   p_kst 1.054023e-03   p_cons 6.024034e-01   p_joint 2.794253e-03

Joint ci ratio: 7.879586e-02	ci left: 2.694011e-03	ci right 2.916100e-03	k: 2467	n:880000
Cons ci ratio: 3.395762e-03	ci left: 6.012527e-01	ci right 6.032989e-01	k: 530003	n:880000
KS ci ratio: 1.286818e-01	ci left: 9.856125e-04	ci right 1.122251e-03	k: 926	n:880000
NUCB2   880000 perm   434 sec   (2029 perm/sec)   p_kst 1.052273e-03   p_cons 6.022761e-01   p_joint 2.803409e-03

Joint ci ratio: 7.970910e-02	ci left: 2.602062e-03	ci right 2.819172e-03	k: 2411	n:890000
Cons ci ratio: 3.376613e-03	ci left: 6.012609e-01	ci right 6.032957e-01	k: 536028	n:890000
KS ci ratio: 1.281303e-01	ci left: 9.832381e-04	ci right 1.118919e-03	k: 934	n:890000
NUCB2   890000 perm   442 sec   (2015 perm/sec)   p_kst 1.049438e-03   p_cons 6.022787e-01   p_joint 2.708989e-03

Joint ci ratio: 7.925039e-02	ci left: 2.603643e-03	ci right 2.819577e-03	k: 2439	n:900000
Cons ci ratio: 3.357239e-03	ci left: 6.013469e-01	ci right 6.033702e-01	k: 542123	n:900000
KS ci ratio: 1.272485e-01	ci left: 9.862964e-04	ci right 1.121392e-03	k: 947	n:900000
NUCB2   900000 perm   450 sec   (2001 perm/sec)   p_kst 1.052222e-03   p_cons 6.023589e-01   p_joint 2.710000e-03

Joint ci ratio: 7.913783e-02	ci left: 2.582571e-03	ci right 2.796439e-03	k: 2446	n:910000
Cons ci ratio: 3.338800e-03	ci left: 6.013441e-01	ci right 6.033563e-01	k: 548139	n:910000
KS ci ratio: 1.263190e-01	ci left: 9.903548e-04	ci right 1.124941e-03	k: 961	n:910000
NUCB2   910000 perm   458 sec   (1987 perm/sec)   p_kst 1.056044e-03   p_cons 6.023505e-01   p_joint 2.687912e-03

Joint ci ratio: 7.892905e-02	ci left: 2.568350e-03	ci right 2.780453e-03	k: 2459	n:920000
Cons ci ratio: 3.320179e-03	ci left: 6.014111e-01	ci right 6.034122e-01	k: 554219	n:920000
KS ci ratio: 1.256676e-01	ci left: 9.901171e-04	ci right 1.123926e-03	k: 971	n:920000
NUCB2   920000 perm   466 sec   (1973 perm/sec)   p_kst 1.055435e-03   p_cons 6.024120e-01   p_joint 2.672826e-03

Joint ci ratio: 8.276231e-02	ci left: 2.306834e-03	ci right 2.507038e-03	k: 2237	n:930000
Cons ci ratio: 3.302296e-03	ci left: 6.014142e-01	ci right 6.034045e-01	k: 560241	n:930000
KS ci ratio: 1.250261e-01	ci left: 9.898862e-04	ci right 1.122930e-03	k: 981	n:930000
NUCB2   930000 perm   475 sec   (1960 perm/sec)   p_kst 1.054839e-03   p_cons 6.024097e-01   p_joint 2.405376e-03

Joint ci ratio: 8.232209e-02	ci left: 2.307298e-03	ci right 2.506427e-03	k: 2261	n:940000
Cons ci ratio: 3.284473e-03	ci left: 6.014502e-01	ci right 6.034300e-01	k: 566294	n:940000
KS ci ratio: 1.245201e-01	ci left: 9.876004e-04	ci right 1.119760e-03	k: 989	n:940000
NUCB2   940000 perm   483 sec   (1947 perm/sec)   p_kst 1.052128e-03   p_cons 6.024404e-01   p_joint 2.405319e-03

Joint ci ratio: 8.172770e-02	ci left: 2.317035e-03	ci right 2.515492e-03	k: 2294	n:950000
Cons ci ratio: 3.267251e-03	ci left: 6.014393e-01	ci right 6.034085e-01	k: 572303	n:950000
KS ci ratio: 1.237103e-01	ci left: 9.904640e-04	ci right 1.122082e-03	k: 1002	n:950000
NUCB2   950000 perm   491 sec   (1934 perm/sec)   p_kst 1.054737e-03   p_cons 6.024242e-01   p_joint 2.414737e-03

Joint ci ratio: 8.130370e-02	ci left: 2.317390e-03	ci right 2.514798e-03	k: 2318	n:960000
Cons ci ratio: 3.250220e-03	ci left: 6.014400e-01	ci right 6.033990e-01	k: 578323	n:960000
KS ci ratio: 1.228557e-01	ci left: 9.942804e-04	ci right 1.125427e-03	k: 1016	n:960000
NUCB2   960000 perm   499 sec   (1922 perm/sec)   p_kst 1.058333e-03   p_cons 6.024198e-01   p_joint 2.414583e-03

Joint ci ratio: 8.353691e-02	ci left: 2.170311e-03	ci right 2.360516e-03	k: 2196	n:970000
Cons ci ratio: 3.233807e-03	ci left: 6.013881e-01	ci right 6.033370e-01	k: 584292	n:970000
KS ci ratio: 1.221966e-01	ci left: 9.950228e-04	ci right 1.125512e-03	k: 1027	n:970000
NUCB2   970000 perm   508 sec   (1909 perm/sec)   p_kst 1.058763e-03   p_cons 6.023629e-01   p_joint 2.263918e-03

Joint ci ratio: 8.314058e-02	ci left: 2.169147e-03	ci right 2.358304e-03	k: 2217	n:980000
Cons ci ratio: 3.217064e-03	ci left: 6.014231e-01	ci right 6.033620e-01	k: 590345	n:980000
KS ci ratio: 1.214310e-01	ci left: 9.977307e-04	ci right 1.127696e-03	k: 1040	n:980000
NUCB2   980000 perm   517 sec   (1897 perm/sec)   p_kst 1.061224e-03   p_cons 6.023929e-01   p_joint 2.262245e-03

Joint ci ratio: 8.415531e-02	ci left: 2.094817e-03	ci right 2.279832e-03	k: 2164	n:990000
Cons ci ratio: 3.200714e-03	ci left: 6.014372e-01	ci right 6.033663e-01	k: 596378	n:990000
KS ci ratio: 1.208520e-01	ci left: 9.974475e-04	ci right 1.126712e-03	k: 1050	n:990000
NUCB2   990000 perm   525 sec   (1885 perm/sec)   p_kst 1.060606e-03   p_cons 6.024020e-01   p_joint 2.185859e-03

Joint ci ratio: 8.390415e-02	ci left: 2.086596e-03	ci right 2.270307e-03	k: 2177	n:1000000
Cons ci ratio: 3.184757e-03	ci left: 6.014290e-01	ci right 6.033484e-01	k: 602389	n:1000000
KS ci ratio: 1.201678e-01	ci left: 9.991113e-04	ci right 1.127807e-03	k: 1062	n:1000000
NUCB2   1000000 perm   534 sec   (1873 perm/sec)   p_kst 1.062000e-03   p_cons 6.023890e-01   p_joint 2.177000e-03

Joint ci ratio: 8.340761e-02	ci left: 2.091140e-03	ci right 2.274109e-03	k: 2203	n:1010000
Cons ci ratio: 3.169023e-03	ci left: 6.014230e-01	ci right 6.033329e-01	k: 608402	n:1010000
KS ci ratio: 1.191627e-01	ci left: 1.006508e-03	ci right 1.134995e-03	k: 1080	n:1010000
NUCB2   1010000 perm   543 sec   (1862 perm/sec)   p_kst 1.069307e-03   p_cons 6.023782e-01   p_joint 2.181188e-03

Joint ci ratio: 8.301310e-02	ci left: 2.090799e-03	ci right 2.272831e-03	k: 2224	n:1020000
Cons ci ratio: 3.153513e-03	ci left: 6.014181e-01	ci right 6.033186e-01	k: 614416	n:1020000
KS ci ratio: 1.185067e-01	ci left: 1.008055e-03	ci right 1.135982e-03	k: 1092	n:1020000
NUCB2   1020000 perm   551 sec   (1850 perm/sec)   p_kst 1.070588e-03   p_cons 6.023686e-01   p_joint 2.180392e-03

Joint ci ratio: 8.339043e-02	ci left: 2.051485e-03	ci right 2.230945e-03	k: 2204	n:1030000
Cons ci ratio: 3.138166e-03	ci left: 6.014230e-01	ci right 6.033143e-01	k: 620440	n:1030000
KS ci ratio: 1.176484e-01	ci left: 1.013343e-03	ci right 1.140945e-03	k: 1108	n:1030000
NUCB2   1030000 perm   560 sec   (1839 perm/sec)   p_kst 1.075728e-03   p_cons 6.023689e-01   p_joint 2.139806e-03

Joint ci ratio: 8.344819e-02	ci left: 2.028933e-03	ci right 2.206550e-03	k: 2201	n:1040000
Cons ci ratio: 3.123516e-03	ci left: 6.013548e-01	ci right 6.032370e-01	k: 626388	n:1040000
KS ci ratio: 1.169648e-01	ci left: 1.015733e-03	ci right 1.142841e-03	k: 1121	n:1040000
NUCB2   1040000 perm   569 sec   (1827 perm/sec)   p_kst 1.077885e-03   p_cons 6.022962e-01   p_joint 2.116346e-03

Joint ci ratio: 8.327867e-02	ci left: 2.018003e-03	ci right 2.194286e-03	k: 2210	n:1050000
Cons ci ratio: 3.108873e-03	ci left: 6.013183e-01	ci right 6.031916e-01	k: 632368	n:1050000
KS ci ratio: 1.166018e-01	ci left: 1.012531e-03	ci right 1.138818e-03	k: 1128	n:1050000
NUCB2   1050000 perm   578 sec   (1816 perm/sec)   p_kst 1.074286e-03   p_cons 6.022552e-01   p_joint 2.104762e-03

Joint ci ratio: 8.294185e-02	ci left: 2.015593e-03	ci right 2.190919e-03	k: 2228	n:1060000
Cons ci ratio: 3.094189e-03	ci left: 6.013204e-01	ci right 6.031847e-01	k: 638388	n:1060000
KS ci ratio: 1.161910e-01	ci left: 1.010306e-03	ci right 1.135842e-03	k: 1136	n:1060000
NUCB2   1060000 perm   587 sec   (1805 perm/sec)   p_kst 1.071698e-03   p_cons 6.022528e-01   p_joint 2.101887e-03

Joint ci ratio: 8.275685e-02	ci left: 2.005907e-03	ci right 2.179983e-03	k: 2238	n:1070000
Cons ci ratio: 3.079399e-03	ci left: 6.013710e-01	ci right 6.032266e-01	k: 644460	n:1070000
KS ci ratio: 1.158859e-01	ci left: 1.006309e-03	ci right 1.130997e-03	k: 1142	n:1070000
NUCB2   1070000 perm   597 sec   (1793 perm/sec)   p_kst 1.067290e-03   p_cons 6.022991e-01   p_joint 2.091589e-03

Joint ci ratio: 8.364200e-02	ci left: 1.944718e-03	ci right 2.115377e-03	k: 2191	n:1080000
Cons ci ratio: 3.065589e-03	ci left: 6.013003e-01	ci right 6.031473e-01	k: 650402	n:1080000
KS ci ratio: 1.153323e-01	ci left: 1.006882e-03	ci right 1.131004e-03	k: 1153	n:1080000
NUCB2   1080000 perm   606 sec   (1782 perm/sec)   p_kst 1.067593e-03   p_cons 6.022241e-01   p_joint 2.028704e-03

Joint ci ratio: 8.339535e-02	ci left: 1.938554e-03	ci right 2.108146e-03	k: 2204	n:1090000
Cons ci ratio: 3.050952e-03	ci left: 6.013897e-01	ci right 6.032282e-01	k: 656517	n:1090000
KS ci ratio: 1.144917e-01	ci left: 1.012793e-03	ci right 1.136672e-03	k: 1170	n:1090000
NUCB2   1090000 perm   615 sec   (1772 perm/sec)   p_kst 1.073394e-03   p_cons 6.023092e-01   p_joint 2.022018e-03

Joint ci ratio: 8.309458e-02	ci left: 1.935174e-03	ci right 2.103829e-03	k: 2220	n:1100000
Cons ci ratio: 3.037221e-03	ci left: 6.013674e-01	ci right 6.031975e-01	k: 662511	n:1100000
KS ci ratio: 1.141512e-01	ci left: 1.009767e-03	ci right 1.132884e-03	k: 1177	n:1100000
NUCB2   1100000 perm   625 sec   (1761 perm/sec)   p_kst 1.070000e-03   p_cons 6.022827e-01   p_joint 2.018182e-03

Joint ci ratio: 8.259381e-02	ci left: 1.941560e-03	ci right 2.109704e-03	k: 2247	n:1110000
Cons ci ratio: 3.023633e-03	ci left: 6.013519e-01	ci right 6.031737e-01	k: 668512	n:1110000
KS ci ratio: 1.135741e-01	ci left: 1.011173e-03	ci right 1.133797e-03	k: 1189	n:1110000
NUCB2   1110000 perm   634 sec   (1751 perm/sec)   p_kst 1.071171e-03   p_cons 6.022631e-01   p_joint 2.024324e-03

Joint ci ratio: 8.224701e-02	ci left: 1.940839e-03	ci right 2.108181e-03	k: 2266	n:1120000
Cons ci ratio: 3.010253e-03	ci left: 6.013321e-01	ci right 6.031459e-01	k: 674508	n:1120000
KS ci ratio: 1.131472e-01	ci left: 1.009953e-03	ci right 1.131937e-03	k: 1198	n:1120000
NUCB2   1120000 perm   643 sec   (1741 perm/sec)   p_kst 1.069643e-03   p_cons 6.022393e-01   p_joint 2.023214e-03

Joint ci ratio: 8.197645e-02	ci left: 1.936665e-03	ci right 2.103072e-03	k: 2281	n:1130000
Cons ci ratio: 2.997111e-03	ci left: 6.013031e-01	ci right 6.031088e-01	k: 680493	n:1130000
KS ci ratio: 1.128185e-01	ci left: 1.007034e-03	ci right 1.128290e-03	k: 1205	n:1130000
NUCB2   1130000 perm   653 sec   (1730 perm/sec)   p_kst 1.066372e-03   p_cons 6.022062e-01   p_joint 2.018584e-03

Joint ci ratio: 8.204926e-02	ci left: 1.916240e-03	ci right 2.081044e-03	k: 2277	n:1140000
Cons ci ratio: 2.983899e-03	ci left: 6.013131e-01	ci right 6.031109e-01	k: 686522	n:1140000
KS ci ratio: 1.125856e-01	ci left: 1.002463e-03	ci right 1.122902e-03	k: 1210	n:1140000
NUCB2   1140000 perm   663 sec   (1720 perm/sec)   p_kst 1.061404e-03   p_cons 6.022123e-01   p_joint 1.997368e-03

Joint ci ratio: 8.169143e-02	ci left: 1.916612e-03	ci right 2.080695e-03	k: 2297	n:1150000
Cons ci ratio: 2.970628e-03	ci left: 6.013604e-01	ci right 6.031504e-01	k: 692594	n:1150000
KS ci ratio: 1.120778e-01	ci left: 1.003042e-03	ci right 1.122972e-03	k: 1221	n:1150000
NUCB2   1150000 perm   672 sec   (1710 perm/sec)   p_kst 1.061739e-03   p_cons 6.022557e-01   p_joint 1.997391e-03

Joint ci ratio: 8.153232e-02	ci left: 1.907689e-03	ci right 2.070675e-03	k: 2306	n:1160000
Cons ci ratio: 2.957735e-03	ci left: 6.013742e-01	ci right 6.031563e-01	k: 698628	n:1160000
KS ci ratio: 1.114862e-01	ci left: 1.005289e-03	ci right 1.124811e-03	k: 1234	n:1160000
NUCB2   1160000 perm   682 sec   (1700 perm/sec)   p_kst 1.063793e-03   p_cons 6.022655e-01   p_joint 1.987931e-03

Joint ci ratio: 8.133894e-02	ci left: 1.900594e-03	ci right 2.062571e-03	k: 2317	n:1170000
Cons ci ratio: 2.945235e-03	ci left: 6.013509e-01	ci right 6.031255e-01	k: 704619	n:1170000
KS ci ratio: 1.112615e-01	ci left: 1.000851e-03	ci right 1.119590e-03	k: 1239	n:1170000
NUCB2   1170000 perm   692 sec   (1690 perm/sec)   p_kst 1.058974e-03   p_cons 6.022385e-01   p_joint 1.980342e-03

Joint ci ratio: 8.141004e-02	ci left: 1.881166e-03	ci right 2.041633e-03	k: 2313	n:1180000
Cons ci ratio: 2.933140e-03	ci left: 6.012874e-01	ci right 6.030545e-01	k: 710562	n:1180000
KS ci ratio: 1.110828e-01	ci left: 9.956648e-04	ci right 1.113586e-03	k: 1243	n:1180000
NUCB2   1180000 perm   702 sec   (1680 perm/sec)   p_kst 1.053390e-03   p_cons 6.021712e-01   p_joint 1.960169e-03

Joint ci ratio: 8.120003e-02	ci left: 1.875237e-03	ci right 2.034766e-03	k: 2325	n:1190000
Cons ci ratio: 2.920983e-03	ci left: 6.012594e-01	ci right 6.030191e-01	k: 716546	n:1190000
KS ci ratio: 1.106390e-01	ci left: 9.954683e-04	ci right 1.112864e-03	k: 1253	n:1190000
NUCB2   1190000 perm   712 sec   (1671 perm/sec)   p_kst 1.052941e-03   p_cons 6.021395e-01   p_joint 1.953782e-03

Joint ci ratio: 8.088770e-02	ci left: 1.874306e-03	ci right 2.033114e-03	k: 2343	n:1200000
Cons ci ratio: 2.908865e-03	ci left: 6.012503e-01	ci right 6.030026e-01	k: 722552	n:1200000
KS ci ratio: 1.103316e-01	ci left: 9.928447e-04	ci right 1.109585e-03	k: 1260	n:1200000
NUCB2   1200000 perm   722 sec   (1661 perm/sec)   p_kst 1.050000e-03   p_cons 6.021267e-01   p_joint 1.952500e-03

Joint ci ratio: 8.064741e-02	ci left: 1.870152e-03	ci right 2.028115e-03	k: 2357	n:1210000
Cons ci ratio: 2.896506e-03	ci left: 6.013058e-01	ci right 6.030508e-01	k: 728636	n:1210000
KS ci ratio: 1.099834e-01	ci left: 9.910688e-04	ci right 1.107209e-03	k: 1268	n:1210000
NUCB2   1210000 perm   732 sec   (1652 perm/sec)   p_kst 1.047934e-03   p_cons 6.021785e-01   p_joint 1.947934e-03

Joint ci ratio: 8.187480e-02	ci left: 1.798609e-03	ci right 1.952952e-03	k: 2287	n:1220000
Cons ci ratio: 2.884728e-03	ci left: 6.012898e-01	ci right 6.030277e-01	k: 734634	n:1220000
KS ci ratio: 1.098108e-01	ci left: 9.861337e-04	ci right 1.101502e-03	k: 1272	n:1220000
NUCB2   1220000 perm   743 sec   (1642 perm/sec)   p_kst 1.042623e-03   p_cons 6.021590e-01   p_joint 1.874590e-03

Joint ci ratio: 8.234550e-02	ci left: 1.763280e-03	ci right 1.915503e-03	k: 2261	n:1230000
Cons ci ratio: 2.873069e-03	ci left: 6.012783e-01	ci right 6.030091e-01	k: 740637	n:1230000
KS ci ratio: 1.091693e-01	ci left: 9.899776e-04	ci right 1.105076e-03	k: 1287	n:1230000
NUCB2   1230000 perm   753 sec   (1633 perm/sec)   p_kst 1.046341e-03   p_cons 6.021439e-01   p_joint 1.838211e-03

Joint ci ratio: 8.390259e-02	ci left: 1.683513e-03	ci right 1.831733e-03	k: 2178	n:1240000
Cons ci ratio: 2.861299e-03	ci left: 6.013088e-01	ci right 6.030326e-01	k: 746692	n:1240000
KS ci ratio: 1.087480e-01	ci left: 9.898387e-04	ci right 1.104448e-03	k: 1297	n:1240000
NUCB2   1240000 perm   764 sec   (1623 perm/sec)   p_kst 1.045968e-03   p_cons 6.021710e-01   p_joint 1.756452e-03

Joint ci ratio: 7.711018e-02	ci left: 1.983626e-03	ci right 2.143496e-03	k: 2578	n:1250000
Cons ci ratio: 2.850138e-03	ci left: 6.012605e-01	ci right 6.029774e-01	k: 752649	n:1250000
KS ci ratio: 1.081248e-01	ci left: 9.935946e-04	ci right 1.107938e-03	k: 1312	n:1250000
NUCB2   1250000 perm   774 sec   (1614 perm/sec)   p_kst 1.049600e-03   p_cons 6.021192e-01   p_joint 2.062400e-03

Joint ci ratio: 7.676855e-02	ci left: 1.985785e-03	ci right 2.145089e-03	k: 2601	n:1260000
Cons ci ratio: 2.838689e-03	ci left: 6.012836e-01	ci right 6.029937e-01	k: 758695	n:1260000
KS ci ratio: 1.076747e-01	ci left: 9.942035e-04	ci right 1.108110e-03	k: 1323	n:1260000
NUCB2   1260000 perm   785 sec   (1605 perm/sec)   p_kst 1.050000e-03   p_cons 6.021389e-01   p_joint 2.064286e-03

Joint ci ratio: 7.895821e-02	ci left: 1.860510e-03	ci right 2.014216e-03	k: 2459	n:1270000
Cons ci ratio: 2.827735e-03	ci left: 6.012457e-01	ci right 6.029491e-01	k: 764664	n:1270000
KS ci ratio: 1.072301e-01	ci left: 9.948038e-04	ci right 1.108279e-03	k: 1334	n:1270000
NUCB2   1270000 perm   796 sec   (1596 perm/sec)   p_kst 1.050394e-03   p_cons 6.020976e-01   p_joint 1.936220e-03

Joint ci ratio: 7.205309e-02	ci left: 2.223888e-03	ci right 2.390876e-03	k: 2952	n:1280000
Cons ci ratio: 2.816653e-03	ci left: 6.012514e-01	ci right 6.029481e-01	k: 770688	n:1280000
KS ci ratio: 1.066721e-01	ci left: 9.976769e-04	ci right 1.110850e-03	k: 1348	n:1280000
NUCB2   1280000 perm   806 sec   (1587 perm/sec)   p_kst 1.053125e-03   p_cons 6.021000e-01   p_joint 2.306250e-03

Joint ci ratio: 7.278618e-02	ci left: 2.161738e-03	ci right 2.325781e-03	k: 2893	n:1290000
Cons ci ratio: 2.805633e-03	ci left: 6.012687e-01	ci right 6.029588e-01	k: 776727	n:1290000
KS ci ratio: 1.062790e-01	ci left: 9.974884e-04	ci right 1.110197e-03	k: 1358	n:1290000
NUCB2   1290000 perm   817 sec   (1579 perm/sec)   p_kst 1.052713e-03   p_cons 6.021140e-01   p_joint 2.242636e-03

Joint ci ratio: 7.256100e-02	ci left: 2.158704e-03	ci right 2.321988e-03	k: 2911	n:1300000
Cons ci ratio: 2.794885e-03	ci left: 6.012611e-01	ci right 6.029446e-01	k: 782734	n:1300000
KS ci ratio: 1.059676e-01	ci left: 9.958059e-04	ci right 1.107975e-03	k: 1366	n:1300000
NUCB2   1300000 perm   828 sec   (1570 perm/sec)   p_kst 1.050769e-03   p_cons 6.021031e-01   p_joint 2.239231e-03

Joint ci ratio: 7.223912e-02	ci left: 2.161713e-03	ci right 2.324469e-03	k: 2937	n:1310000
Cons ci ratio: 2.784117e-03	ci left: 6.012780e-01	ci right 6.029551e-01	k: 788773	n:1310000
KS ci ratio: 1.055822e-01	ci left: 9.956360e-04	ci right 1.107352e-03	k: 1376	n:1310000
NUCB2   1310000 perm   839 sec   (1562 perm/sec)   p_kst 1.050382e-03   p_cons 6.021168e-01   p_joint 2.241985e-03

Joint ci ratio: 7.190933e-02	ci left: 2.165423e-03	ci right 2.327683e-03	k: 2964	n:1320000
Cons ci ratio: 2.773727e-03	ci left: 6.012508e-01	ci right 6.029215e-01	k: 794754	n:1320000
KS ci ratio: 1.049361e-01	ci left: 1.000633e-03	ci right 1.112181e-03	k: 1393	n:1320000
NUCB2   1320000 perm   850 sec   (1554 perm/sec)   p_kst 1.055303e-03   p_cons 6.020864e-01   p_joint 2.245455e-03

Joint ci ratio: 7.400299e-02	ci left: 2.027339e-03	ci right 2.183865e-03	k: 2799	n:1330000
Cons ci ratio: 2.763175e-03	ci left: 6.012721e-01	ci right 6.029365e-01	k: 800799	n:1330000
KS ci ratio: 1.045991e-01	ci left: 9.996992e-04	ci right 1.110763e-03	k: 1402	n:1330000
NUCB2   1330000 perm   861 sec   (1545 perm/sec)   p_kst 1.054135e-03   p_cons 6.021045e-01   p_joint 2.104511e-03

Joint ci ratio: 7.371394e-02	ci left: 2.028324e-03	ci right 2.184288e-03	k: 2821	n:1340000
Cons ci ratio: 2.753391e-03	ci left: 6.011803e-01	ci right 6.028386e-01	k: 806693	n:1340000
KS ci ratio: 1.040075e-01	ci left: 1.003868e-03	ci right 1.114725e-03	k: 1418	n:1340000
NUCB2   1340000 perm   872 sec   (1537 perm/sec)   p_kst 1.058209e-03   p_cons 6.020097e-01   p_joint 2.105224e-03

Joint ci ratio: 7.349302e-02	ci left: 2.025660e-03	ci right 2.180933e-03	k: 2838	n:1350000
Cons ci ratio: 2.743208e-03	ci left: 6.011774e-01	ci right 6.028296e-01	k: 812705	n:1350000
KS ci ratio: 1.037520e-01	ci left: 1.001482e-03	ci right 1.111788e-03	k: 1425	n:1350000
NUCB2   1350000 perm   883 sec   (1529 perm/sec)   p_kst 1.055556e-03   p_cons 6.020037e-01   p_joint 2.102222e-03

Joint ci ratio: 7.322270e-02	ci left: 2.025924e-03	ci right 2.180621e-03	k: 2859	n:1360000
Cons ci ratio: 2.732928e-03	ci left: 6.012113e-01	ci right 6.028574e-01	k: 818767	n:1360000
KS ci ratio: 1.034985e-01	ci left: 9.991318e-04	ci right 1.108893e-03	k: 1432	n:1360000
NUCB2   1360000 perm   895 sec   (1520 perm/sec)   p_kst 1.052941e-03   p_cons 6.020346e-01   p_joint 2.102206e-03

Joint ci ratio: 7.294267e-02	ci left: 2.026901e-03	ci right 2.181056e-03	k: 2881	n:1370000
Cons ci ratio: 2.722950e-03	ci left: 6.012119e-01	ci right 6.028519e-01	k: 824784	n:1370000
KS ci ratio: 1.029964e-01	ci left: 1.001794e-03	ci right 1.111282e-03	k: 1446	n:1370000
NUCB2   1370000 perm   906 sec   (1512 perm/sec)   p_kst 1.055474e-03   p_cons 6.020321e-01   p_joint 2.102920e-03

Joint ci ratio: 7.280413e-02	ci left: 2.020039e-03	ci right 2.173367e-03	k: 2892	n:1380000
Cons ci ratio: 2.713207e-03	ci left: 6.011900e-01	ci right 6.028241e-01	k: 830770	n:1380000
KS ci ratio: 1.028191e-01	ci left: 9.980645e-04	ci right 1.106946e-03	k: 1451	n:1380000
NUCB2   1380000 perm   917 sec   (1504 perm/sec)   p_kst 1.051449e-03   p_cons 6.020072e-01   p_joint 2.095652e-03

Joint ci ratio: 7.257876e-02	ci left: 2.018220e-03	ci right 2.170917e-03	k: 2910	n:1390000
Cons ci ratio: 2.703251e-03	ci left: 6.012246e-01	ci right 6.028527e-01	k: 836834	n:1390000
KS ci ratio: 1.025723e-01	ci left: 9.957907e-04	ci right 1.104147e-03	k: 1458	n:1390000
NUCB2   1390000 perm   929 sec   (1497 perm/sec)   p_kst 1.048921e-03   p_cons 6.020388e-01   p_joint 2.093525e-03

Joint ci ratio: 7.285571e-02	ci left: 1.988375e-03	ci right 2.139411e-03	k: 2888	n:1400000
Cons ci ratio: 2.693661e-03	ci left: 6.012129e-01	ci right 6.028352e-01	k: 842834	n:1400000
KS ci ratio: 1.023622e-01	ci left: 9.928537e-04	ci right 1.100656e-03	k: 1464	n:1400000
NUCB2   1400000 perm   940 sec   (1489 perm/sec)   p_kst 1.045714e-03   p_cons 6.020243e-01   p_joint 2.062857e-03

Joint ci ratio: 7.406044e-02	ci left: 1.909524e-03	ci right 2.057073e-03	k: 2795	n:1410000
Cons ci ratio: 2.683954e-03	ci left: 6.012405e-01	ci right 6.028570e-01	k: 848889	n:1410000
KS ci ratio: 1.019110e-01	ci left: 9.947966e-04	ci right 1.102305e-03	k: 1477	n:1410000
NUCB2   1410000 perm   952 sec   (1481 perm/sec)   p_kst 1.047518e-03   p_cons 6.020489e-01   p_joint 1.982270e-03

Joint ci ratio: 7.379697e-02	ci left: 1.909901e-03	ci right 2.056931e-03	k: 2815	n:1420000
Cons ci ratio: 2.674686e-03	ci left: 6.012077e-01	ci right 6.028186e-01	k: 854859	n:1420000
KS ci ratio: 1.015338e-01	ci left: 9.953404e-04	ci right 1.102486e-03	k: 1488	n:1420000
NUCB2   1420000 perm   963 sec   (1474 perm/sec)   p_kst 1.047887e-03   p_cons 6.020134e-01   p_joint 1.982394e-03

Joint ci ratio: 7.432831e-02	ci left: 1.869089e-03	ci right 2.014059e-03	k: 2775	n:1430000
Cons ci ratio: 2.665201e-03	ci left: 6.012315e-01	ci right 6.028367e-01	k: 860909	n:1430000
KS ci ratio: 1.012284e-01	ci left: 9.945141e-04	ci right 1.101230e-03	k: 1497	n:1430000
NUCB2   1430000 perm   975 sec   (1466 perm/sec)   p_kst 1.046853e-03   p_cons 6.020343e-01   p_joint 1.940559e-03

Joint ci ratio: 7.414172e-02	ci left: 1.865651e-03	ci right 2.009975e-03	k: 2789	n:1440000
Cons ci ratio: 2.655928e-03	ci left: 6.012347e-01	ci right 6.028343e-01	k: 866930	n:1440000
KS ci ratio: 1.009593e-01	ci left: 9.930228e-04	ci right 1.099278e-03	k: 1505	n:1440000
NUCB2   1440000 perm   987 sec   (1459 perm/sec)   p_kst 1.045139e-03   p_cons 6.020347e-01   p_joint 1.936806e-03

Joint ci ratio: 7.393013e-02	ci left: 1.863615e-03	ci right 2.007352e-03	k: 2805	n:1450000
Cons ci ratio: 2.646607e-03	ci left: 6.012641e-01	ci right 6.028582e-01	k: 872989	n:1450000
KS ci ratio: 1.008257e-01	ci left: 9.888633e-04	ci right 1.094525e-03	k: 1509	n:1450000
NUCB2   1450000 perm   999 sec   (1451 perm/sec)   p_kst 1.040690e-03   p_cons 6.020614e-01   p_joint 1.934483e-03

Joint ci ratio: 7.366804e-02	ci left: 1.864296e-03	ci right 2.007554e-03	k: 2825	n:1460000
Cons ci ratio: 2.637500e-03	ci left: 6.012719e-01	ci right 6.028605e-01	k: 879017	n:1460000
KS ci ratio: 1.006261e-01	ci left: 9.860962e-04	ci right 1.091242e-03	k: 1515	n:1460000
NUCB2   1460000 perm   1011 sec   (1444 perm/sec)   p_kst 1.037671e-03   p_cons 6.020664e-01   p_joint 1.934932e-03

Joint ci ratio: 6.484822e-02	ci left: 2.399167e-03	ci right 2.560626e-03	k: 3644	n:1470000
Cons ci ratio: 2.628560e-03	ci left: 6.012660e-01	ci right 6.028492e-01	k: 885025	n:1470000
KS ci ratio: 1.002630e-01	ci left: 9.866831e-04	ci right 1.091489e-03	k: 1526	n:1470000
NUCB2   1470000 perm   1023 sec   (1437 perm/sec)   p_kst 1.038095e-03   p_cons 6.020578e-01   p_joint 2.478912e-03

Joint ci ratio: 6.546377e-02	ci left: 2.337756e-03	ci right 2.496633e-03	k: 3576	n:1480000
Cons ci ratio: 2.620162e-03	ci left: 6.011777e-01	ci right 6.027556e-01	k: 890911	n:1480000
KS ci ratio: 9.990379e-02	ci left: 9.872628e-04	ci right 1.091733e-03	k: 1537	n:1480000
NUCB2   1480000 perm   1035 sec   (1430 perm/sec)   p_kst 1.038514e-03   p_cons 6.019669e-01   p_joint 2.416216e-03

Outputting figure to mutsig2_images.part000000000118/NUCB2.7_1311_1480000_0.0010385_0.60197_0.0024162.png
                gene_name: NUCB2
               theta_stop: 0.100 
                    nperm: 1480000 
                     p_ks: 0.0010 
        ci_ks_bounds_left: 0.00099 
       ci_ks_bounds_right: 0.0011 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.0024 
     ci_joint_bounds_left: 0.0023 
    ci_joint_bounds_right: 0.0025 

Current progress: 15 percent done.
NUP155
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.482342e-02	ci left: 3.289257e-01	ci right 3.475686e-01	k: 3382	n:10000
Cons ci ratio: 6.198219e-02	ci left: 2.767603e-01	ci right 2.945647e-01	k: 2856	n:10000
KS ci ratio: 6.344096e-02	ci left: 2.674529e-01	ci right 2.850777e-01	k: 2762	n:10000
NUP155   10000 perm   2 sec   (5314 perm/sec)   p_kst 2.762000e-01   p_cons 2.856000e-01   p_joint 3.382000e-01

Outputting figure to mutsig2_images.part000000000118/NUP155.6_4316_10000_0.2762_0.2856_0.3382.png
                gene_name: NUP155
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 17 percent done.
NUP37
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.128515e-02	ci left: 7.639523e-01	ci right 7.804888e-01	k: 7723	n:10000
Cons ci ratio: 1.594957e-02	ci left: 8.510045e-01	ci right 8.647863e-01	k: 8580	n:10000
KS ci ratio: 3.019312e-02	ci left: 6.180386e-01	ci right 6.370870e-01	k: 6276	n:10000
NUP37   10000 perm   2 sec   (6525 perm/sec)   p_kst 6.276000e-01   p_cons 8.580000e-01   p_joint 7.723000e-01

Outputting figure to mutsig2_images.part000000000118/NUP37.6_1017_10000_0.6276_0.858_0.7723.png
                gene_name: NUP37
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 20 percent done.
NWD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.621809e-02	ci left: 4.086069e-01	ci right 4.280407e-01	k: 4183	n:10000
Cons ci ratio: 5.608365e-02	ci left: 3.188987e-01	ci right 3.374015e-01	k: 3281	n:10000
KS ci ratio: 5.906185e-02	ci left: 2.966780e-01	ci right 3.148353e-01	k: 3057	n:10000
NWD1   10000 perm   2 sec   (4947 perm/sec)   p_kst 3.057000e-01   p_cons 3.281000e-01   p_joint 4.183000e-01

Outputting figure to mutsig2_images.part000000000118/NWD1.6_4354_10000_0.3057_0.3281_0.4183.png
                gene_name: NWD1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 22 percent done.
NUMA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.447565e-02	ci left: 5.540129e-01	ci right 5.735499e-01	k: 5638	n:10000
KS ci ratio: 2.055178e-02	ci left: 7.762076e-01	ci right 7.924264e-01	k: 7844	n:10000
NUMA1   10000 perm   2 sec   (4865 perm/sec)   p_kst 7.844000e-01   p_cons 5.638000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000118/NUMA1.5_6448_10000_0.7844_0.5638_1.png
                gene_name: NUMA1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 24 percent done.
NUP160
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.127910e-02	ci left: 7.640535e-01	ci right 7.805875e-01	k: 7724	n:10000
Cons ci ratio: 2.398435e-02	ci left: 7.187589e-01	ci right 7.363084e-01	k: 7276	n:10000
KS ci ratio: 3.115002e-02	ci left: 6.032715e-01	ci right 6.224627e-01	k: 6129	n:10000
NUP160   10000 perm   2 sec   (5389 perm/sec)   p_kst 6.129000e-01   p_cons 7.276000e-01   p_joint 7.724000e-01

Outputting figure to mutsig2_images.part000000000118/NUP160.5_4455_10000_0.6129_0.7276_0.7724.png
                gene_name: NUP160
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 27 percent done.
NXF5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.005007e-02	ci left: 2.897392e-01	ci right 3.077782e-01	k: 2987	n:10000
Cons ci ratio: 4.058238e-02	ci left: 4.727624e-01	ci right 4.924478e-01	k: 4826	n:10000
KS ci ratio: 1.005619e-01	ci left: 1.252279e-01	ci right 1.385873e-01	k: 1318	n:10000
NXF5   10000 perm   2 sec   (6433 perm/sec)   p_kst 1.318000e-01   p_cons 4.826000e-01   p_joint 2.987000e-01

Joint ci ratio: 5.155386e-02	ci left: 2.184354e-01	ci right 2.300448e-01	k: 4484	n:20000
Cons ci ratio: 2.830190e-02	ci left: 4.825989e-01	ci right 4.965041e-01	k: 9791	n:20000
KS ci ratio: 7.069307e-02	ci left: 1.285194e-01	ci right 1.379875e-01	k: 2664	n:20000
NXF5   20000 perm   3 sec   (5848 perm/sec)   p_kst 1.332000e-01   p_cons 4.895500e-01   p_joint 2.242000e-01

Outputting figure to mutsig2_images.part000000000118/NXF5.5_1154_20000_0.1332_0.48955_0.2242.png
                gene_name: NXF5
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 29 percent done.
NTRK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.214091e-01	ci left: 8.864084e-02	ci right 1.001967e-01	k: 943	n:10000
Cons ci ratio: 3.581263e-02	ci left: 5.351780e-01	ci right 5.547957e-01	k: 5450	n:10000
KS ci ratio: 2.447923e-01	ci left: 2.193497e-02	ci right 2.814593e-02	k: 249	n:10000
NTRK1   10000 perm   2 sec   (6136 perm/sec)   p_kst 2.490000e-02   p_cons 5.450000e-01   p_joint 9.430000e-02

Joint ci ratio: 9.062170e-02	ci left: 8.166013e-02	ci right 8.946085e-02	k: 1710	n:20000
Cons ci ratio: 2.525363e-02	ci left: 5.394691e-01	ci right 5.533175e-01	k: 10928	n:20000
KS ci ratio: 1.729211e-01	ci left: 2.288053e-02	ci right 2.725904e-02	k: 500	n:20000
NTRK1   20000 perm   4 sec   (5555 perm/sec)   p_kst 2.500000e-02   p_cons 5.464000e-01   p_joint 8.550000e-02

Joint ci ratio: 9.643665e-02	ci left: 4.967724e-02	ci right 5.474326e-02	k: 1565	n:30000
Cons ci ratio: 2.005633e-02	ci left: 5.544608e-01	ci right 5.657275e-01	k: 16803	n:30000
KS ci ratio: 1.428069e-01	ci left: 2.274795e-02	ci right 2.627829e-02	k: 734	n:30000
NTRK1   30000 perm   6 sec   (5316 perm/sec)   p_kst 2.446667e-02   p_cons 5.601000e-01   p_joint 5.216667e-02

Joint ci ratio: 6.999942e-02	ci left: 7.014953e-02	ci right 7.526271e-02	k: 2907	n:40000
Cons ci ratio: 1.742417e-02	ci left: 5.536672e-01	ci right 5.634243e-01	k: 22342	n:40000
KS ci ratio: 1.243267e-01	ci left: 2.274042e-02	ci right 2.577918e-02	k: 969	n:40000
NTRK1   40000 perm   8 sec   (5126 perm/sec)   p_kst 2.422500e-02   p_cons 5.585500e-01   p_joint 7.267500e-02

Joint ci ratio: 7.988946e-02	ci left: 4.410174e-02	ci right 4.779120e-02	k: 2296	n:50000
Cons ci ratio: 1.600338e-02	ci left: 5.410630e-01	ci right 5.498117e-01	k: 27272	n:50000
KS ci ratio: 1.118890e-01	ci left: 2.261782e-02	ci right 2.531784e-02	k: 1197	n:50000
NTRK1   50000 perm   10 sec   (5000 perm/sec)   p_kst 2.394000e-02   p_cons 5.454400e-01   p_joint 4.592000e-02

Joint ci ratio: 8.269314e-02	ci left: 3.460521e-02	ci right 3.760654e-02	k: 2165	n:60000
Cons ci ratio: 1.460781e-02	ci left: 5.414887e-01	ci right 5.494736e-01	k: 32729	n:60000
KS ci ratio: 1.035740e-01	ci left: 2.210770e-02	ci right 2.453871e-02	k: 1398	n:60000
NTRK1   60000 perm   12 sec   (4890 perm/sec)   p_kst 2.330000e-02   p_cons 5.454833e-01   p_joint 3.608333e-02

Joint ci ratio: 8.259985e-02	ci left: 2.988239e-02	ci right 3.247095e-02	k: 2181	n:70000
Cons ci ratio: 1.355772e-02	ci left: 5.405588e-01	ci right 5.479518e-01	k: 38098	n:70000
KS ci ratio: 9.562637e-02	ci left: 2.232068e-02	ci right 2.457620e-02	k: 1640	n:70000
NTRK1   70000 perm   15 sec   (4787 perm/sec)   p_kst 2.342857e-02   p_cons 5.442571e-01   p_joint 3.115714e-02

Outputting figure to mutsig2_images.part000000000118/NTRK1.4_2589_70000_0.023429_0.54426_0.031157.png
                gene_name: NTRK1
               theta_stop: 0.096 
                    nperm: 70000 
                     p_ks: 0.023 
        ci_ks_bounds_left: 0.022 
       ci_ks_bounds_right: 0.025 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.031 
     ci_joint_bounds_left: 0.030 
    ci_joint_bounds_right: 0.032 

Current progress: 32 percent done.
NTSR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.749929e-02	ci left: 2.436126e-01	ci right 2.607320e-01	k: 2521	n:10000
Cons ci ratio: 5.308208e-02	ci left: 3.434285e-01	ci right 3.622573e-01	k: 3528	n:10000
KS ci ratio: 8.667538e-02	ci left: 1.623899e-01	ci right 1.772030e-01	k: 1697	n:10000
NTSR1   10000 perm   2 sec   (6609 perm/sec)   p_kst 1.697000e-01   p_cons 3.528000e-01   p_joint 2.521000e-01

Outputting figure to mutsig2_images.part000000000118/NTSR1.4_1273_10000_0.1697_0.3528_0.2521.png
                gene_name: NTSR1
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 34 percent done.
NUAK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.081873e-02	ci left: 4.698654e-01	ci right 4.895465e-01	k: 4797	n:10000
Cons ci ratio: 1.062005e-01	ci left: 1.134968e-01	ci right 1.263255e-01	k: 1198	n:10000
KS ci ratio: 3.602976e-02	ci left: 5.321738e-01	ci right 5.518018e-01	k: 5420	n:10000
NUAK1   10000 perm   2 sec   (6311 perm/sec)   p_kst 5.420000e-01   p_cons 1.198000e-01   p_joint 4.797000e-01

Joint ci ratio: 4.744031e-02	ci left: 2.484247e-01	ci right 2.605467e-01	k: 5089	n:20000
Cons ci ratio: 7.320138e-02	ci left: 1.207908e-01	ci right 1.300185e-01	k: 2507	n:20000
KS ci ratio: 2.578544e-02	ci left: 5.291087e-01	ci right 5.429808e-01	k: 10721	n:20000
NUAK1   20000 perm   4 sec   (5669 perm/sec)   p_kst 5.360500e-01   p_cons 1.253500e-01   p_joint 2.544500e-01

Outputting figure to mutsig2_images.part000000000118/NUAK1.4_2014_20000_0.53605_0.12535_0.25445.png
                gene_name: NUAK1
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 37 percent done.
NUCB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.278700e-01	ci left: 8.038196e-02	ci right 9.146065e-02	k: 858	n:10000
Cons ci ratio: 1.036150e-01	ci left: 1.186757e-01	ci right 1.317435e-01	k: 1251	n:10000
KS ci ratio: 1.476979e-01	ci left: 6.092108e-02	ci right 7.073370e-02	k: 657	n:10000
NUCB1   10000 perm   2 sec   (6345 perm/sec)   p_kst 6.570000e-02   p_cons 1.251000e-01   p_joint 8.580000e-02

Joint ci ratio: 1.150598e-01	ci left: 5.168573e-02	ci right 5.804447e-02	k: 1096	n:20000
Cons ci ratio: 7.226545e-02	ci left: 1.235960e-01	ci right 1.329123e-01	k: 2564	n:20000
KS ci ratio: 1.057804e-01	ci left: 6.084156e-02	ci right 6.768579e-02	k: 1284	n:20000
NUCB1   20000 perm   3 sec   (5728 perm/sec)   p_kst 6.420000e-02   p_cons 1.282000e-01   p_joint 5.480000e-02

Joint ci ratio: 9.271595e-02	ci left: 5.362028e-02	ci right 5.886607e-02	k: 1686	n:30000
Cons ci ratio: 5.895651e-02	ci left: 1.246339e-01	ci right 1.322382e-01	k: 3852	n:30000
KS ci ratio: 8.696205e-02	ci left: 6.066825e-02	ci right 6.621666e-02	k: 1902	n:30000
NUCB1   30000 perm   5 sec   (5493 perm/sec)   p_kst 6.340000e-02   p_cons 1.284000e-01   p_joint 5.620000e-02

Outputting figure to mutsig2_images.part000000000118/NUCB1.4_1434_30000_0.0634_0.1284_0.0562.png
                gene_name: NUCB1
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.063 
        ci_ks_bounds_left: 0.061 
       ci_ks_bounds_right: 0.066 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.056 
     ci_joint_bounds_left: 0.054 
    ci_joint_bounds_right: 0.059 

Current progress: 39 percent done.
NUDT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.648198e-02	ci left: 5.259661e-01	ci right 5.456130e-01	k: 5358	n:10000
KS ci ratio: 2.601579e-02	ci left: 6.850639e-01	ci right 7.032228e-01	k: 6942	n:10000
NUDT1   10000 perm   1 sec   (6874 perm/sec)   p_kst 6.942000e-01   p_cons 5.358000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000118/NUDT1.4_556_10000_0.6942_0.5358_1.png
                gene_name: NUDT1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 41 percent done.
NUF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.556745e-01	ci left: 9.867770e-03	ci right 1.422343e-02	k: 119	n:10000
Cons ci ratio: 4.846095e-01	ci left: 4.932166e-03	ci right 8.165407e-03	k: 64	n:10000
KS ci ratio: 7.078431e-02	ci left: 2.263229e-01	ci right 2.430319e-01	k: 2346	n:10000
NUF2   10000 perm   2 sec   (6438 perm/sec)   p_kst 2.346000e-01   p_cons 6.400000e-03   p_joint 1.190000e-02

Joint ci ratio: 2.338876e-01	ci left: 1.222918e-02	ci right 1.551439e-02	k: 276	n:20000
Cons ci ratio: 3.538073e-01	ci left: 5.022594e-03	ci right 7.224712e-03	k: 121	n:20000
KS ci ratio: 5.062348e-02	ci left: 2.247768e-01	ci right 2.365016e-01	k: 4612	n:20000
NUF2   20000 perm   3 sec   (5858 perm/sec)   p_kst 2.306000e-01   p_cons 6.050000e-03   p_joint 1.380000e-02

Joint ci ratio: 2.056447e-01	ci left: 1.073536e-02	ci right 1.322716e-02	k: 358	n:30000
Cons ci ratio: 2.783654e-01	ci left: 5.653057e-03	ci right 7.511107e-03	k: 196	n:30000
KS ci ratio: 4.127008e-02	ci left: 2.264057e-01	ci right 2.359798e-01	k: 6935	n:30000
NUF2   30000 perm   5 sec   (5597 perm/sec)   p_kst 2.311667e-01   p_cons 6.533333e-03   p_joint 1.193333e-02

Joint ci ratio: 1.985553e-01	ci left: 8.691436e-03	ci right 1.063075e-02	k: 385	n:40000
Cons ci ratio: 2.442117e-01	ci left: 5.618552e-03	ci right 7.204386e-03	k: 255	n:40000
KS ci ratio: 3.556844e-02	ci left: 2.287648e-01	ci right 2.370740e-01	k: 9316	n:40000
NUF2   40000 perm   7 sec   (5431 perm/sec)   p_kst 2.329000e-01   p_cons 6.375000e-03   p_joint 9.625000e-03

Joint ci ratio: 1.545680e-01	ci left: 1.171764e-02	ci right 1.369954e-02	k: 634	n:50000
Cons ci ratio: 2.180875e-01	ci left: 5.719809e-03	ci right 7.138410e-03	k: 320	n:50000
KS ci ratio: 3.181207e-02	ci left: 2.292206e-01	ci right 2.366504e-01	k: 11646	n:50000
NUF2   50000 perm   9 sec   (5303 perm/sec)   p_kst 2.329200e-01   p_cons 6.400000e-03   p_joint 1.268000e-02

Joint ci ratio: 1.490269e-01	ci left: 1.054987e-02	ci right 1.226455e-02	k: 683	n:60000
Cons ci ratio: 1.975943e-01	ci left: 5.872626e-03	ci right 7.175797e-03	k: 390	n:60000
KS ci ratio: 2.908157e-02	ci left: 2.290417e-01	ci right 2.358175e-01	k: 13945	n:60000
NUF2   60000 perm   12 sec   (5190 perm/sec)   p_kst 2.324167e-01   p_cons 6.500000e-03   p_joint 1.138333e-02

Joint ci ratio: 1.424643e-01	ci left: 9.937235e-03	ci right 1.147516e-02	k: 748	n:70000
Cons ci ratio: 1.833758e-01	ci left: 5.890813e-03	ci right 7.093502e-03	k: 453	n:70000
KS ci ratio: 2.694409e-02	ci left: 2.290334e-01	ci right 2.353031e-01	k: 16251	n:70000
NUF2   70000 perm   14 sec   (5086 perm/sec)   p_kst 2.321571e-01   p_cons 6.471429e-03   p_joint 1.068571e-02

Joint ci ratio: 1.110006e-01	ci left: 1.449728e-02	ci right 1.621313e-02	k: 1227	n:80000
Cons ci ratio: 1.711771e-01	ci left: 5.954849e-03	ci right 7.081387e-03	k: 520	n:80000
KS ci ratio: 2.574199e-02	ci left: 2.218239e-01	ci right 2.276210e-01	k: 17977	n:80000
NUF2   80000 perm   16 sec   (4995 perm/sec)   p_kst 2.247125e-01   p_cons 6.500000e-03   p_joint 1.533750e-02

Joint ci ratio: 1.182865e-01	ci left: 1.134198e-02	ci right 1.277862e-02	k: 1084	n:90000
Cons ci ratio: 1.605794e-01	ci left: 6.049387e-03	ci right 7.116123e-03	k: 591	n:90000
KS ci ratio: 2.422904e-02	ci left: 2.225739e-01	ci right 2.280438e-01	k: 20277	n:90000
NUF2   90000 perm   18 sec   (4896 perm/sec)   p_kst 2.253000e-01   p_cons 6.566667e-03   p_joint 1.204444e-02

Joint ci ratio: 1.230290e-01	ci left: 9.431335e-03	ci right 1.067733e-02	k: 1004	n:100000
Cons ci ratio: 1.534916e-01	ci left: 5.982433e-03	ci right 6.986515e-03	k: 647	n:100000
KS ci ratio: 2.296931e-02	ci left: 2.229626e-01	ci right 2.281533e-01	k: 22555	n:100000
NUF2   100000 perm   21 sec   (4808 perm/sec)   p_kst 2.255500e-01   p_cons 6.470000e-03   p_joint 1.004000e-02

Joint ci ratio: 1.039093e-01	ci left: 1.210860e-02	ci right 1.344454e-02	k: 1404	n:110000
Cons ci ratio: 1.447026e-01	ci left: 6.147523e-03	ci right 7.115129e-03	k: 728	n:110000
KS ci ratio: 2.186489e-02	ci left: 2.236488e-01	ci right 2.286020e-01	k: 24873	n:110000
NUF2   110000 perm   23 sec   (4724 perm/sec)   p_kst 2.261182e-01   p_cons 6.618182e-03   p_joint 1.276364e-02

Joint ci ratio: 8.526577e-02	ci left: 1.656980e-02	ci right 1.805366e-02	k: 2076	n:120000
Cons ci ratio: 1.387420e-01	ci left: 6.149656e-03	ci right 7.074430e-03	k: 792	n:120000
KS ci ratio: 2.094165e-02	ci left: 2.236278e-01	ci right 2.283688e-01	k: 27119	n:120000
NUF2   120000 perm   26 sec   (4644 perm/sec)   p_kst 2.259917e-01   p_cons 6.600000e-03   p_joint 1.730000e-02

Joint ci ratio: 8.735449e-02	ci left: 1.458707e-02	ci right 1.592699e-02	k: 1982	n:130000
Cons ci ratio: 1.336978e-01	ci left: 6.129844e-03	ci right 7.015459e-03	k: 853	n:130000
KS ci ratio: 2.010948e-02	ci left: 2.239050e-01	ci right 2.284610e-01	k: 29403	n:130000
NUF2   130000 perm   28 sec   (4567 perm/sec)   p_kst 2.261769e-01   p_cons 6.561538e-03   p_joint 1.524615e-02

Joint ci ratio: 1.013898e-01	ci left: 1.002836e-02	ci right 1.110634e-02	k: 1478	n:140000
Cons ci ratio: 1.288128e-01	ci left: 6.147952e-03	ci right 7.001249e-03	k: 919	n:140000
KS ci ratio: 1.892878e-02	ci left: 2.322755e-01	ci right 2.367213e-01	k: 32829	n:140000
NUF2   140000 perm   31 sec   (4493 perm/sec)   p_kst 2.344929e-01   p_cons 6.564286e-03   p_joint 1.055714e-02

Joint ci ratio: 9.898750e-02	ci left: 9.834224e-03	ci right 1.086483e-02	k: 1551	n:150000
Cons ci ratio: 1.246178e-01	ci left: 6.144776e-03	ci right 6.967805e-03	k: 982	n:150000
KS ci ratio: 1.826727e-02	ci left: 2.327365e-01	ci right 2.370338e-01	k: 35232	n:150000
NUF2   150000 perm   34 sec   (4421 perm/sec)   p_kst 2.348800e-01   p_cons 6.546667e-03   p_joint 1.034000e-02

Joint ci ratio: 1.105292e-01	ci left: 7.368677e-03	ci right 8.236801e-03	k: 1247	n:160000
Cons ci ratio: 1.209241e-01	ci left: 6.130267e-03	ci right 6.925273e-03	k: 1043	n:160000
KS ci ratio: 1.768102e-02	ci left: 2.329304e-01	ci right 2.370917e-01	k: 37601	n:160000
NUF2   160000 perm   37 sec   (4355 perm/sec)   p_kst 2.350062e-01   p_cons 6.518750e-03   p_joint 7.793750e-03

Joint ci ratio: 1.115496e-01	ci left: 6.809298e-03	ci right 7.619409e-03	k: 1225	n:170000
Cons ci ratio: 1.255688e-01	ci left: 5.341945e-03	ci right 6.063304e-03	k: 968	n:170000
KS ci ratio: 1.714249e-02	ci left: 2.332148e-01	ci right 2.372531e-01	k: 39989	n:170000
NUF2   170000 perm   40 sec   (4286 perm/sec)   p_kst 2.352294e-01   p_cons 5.694118e-03   p_joint 7.205882e-03

Joint ci ratio: 1.012687e-01	ci left: 7.837288e-03	ci right 8.678665e-03	k: 1485	n:180000
Cons ci ratio: 1.224517e-01	ci left: 5.314327e-03	ci right 6.012850e-03	k: 1018	n:180000
KS ci ratio: 1.666860e-02	ci left: 2.330760e-01	ci right 2.369992e-01	k: 42306	n:180000
NUF2   180000 perm   43 sec   (4216 perm/sec)   p_kst 2.350333e-01   p_cons 5.655556e-03   p_joint 8.250000e-03

Joint ci ratio: 9.012906e-02	ci left: 9.413374e-03	ci right 1.030694e-02	k: 1872	n:190000
Cons ci ratio: 1.191085e-01	ci left: 5.330669e-03	ci right 6.010863e-03	k: 1076	n:190000
KS ci ratio: 1.621154e-02	ci left: 2.334046e-01	ci right 2.372246e-01	k: 44709	n:190000
NUF2   190000 perm   46 sec   (4150 perm/sec)   p_kst 2.353105e-01   p_cons 5.663158e-03   p_joint 9.852632e-03

Joint ci ratio: 7.613899e-02	ci left: 1.258172e-02	ci right 1.358247e-02	k: 2615	n:200000
Cons ci ratio: 1.091301e-01	ci left: 6.060048e-03	ci right 6.764373e-03	k: 1281	n:200000
KS ci ratio: 1.579012e-02	ci left: 2.337016e-01	ci right 2.374261e-01	k: 47112	n:200000
NUF2   200000 perm   49 sec   (4085 perm/sec)   p_kst 2.355600e-01   p_cons 6.405000e-03   p_joint 1.307500e-02

Joint ci ratio: 6.957663e-02	ci left: 1.437211e-02	ci right 1.541277e-02	k: 3126	n:210000
Cons ci ratio: 1.061081e-01	ci left: 6.114380e-03	ci right 6.804111e-03	k: 1355	n:210000
KS ci ratio: 1.542236e-02	ci left: 2.334490e-01	ci right 2.370821e-01	k: 49405	n:210000
NUF2   210000 perm   52 sec   (4023 perm/sec)   p_kst 2.352619e-01   p_cons 6.452381e-03   p_joint 1.488571e-02

Joint ci ratio: 6.956669e-02	ci left: 1.373208e-02	ci right 1.472624e-02	k: 3129	n:220000
Cons ci ratio: 1.038737e-01	ci left: 6.097590e-03	ci right 6.770059e-03	k: 1414	n:220000
KS ci ratio: 1.506752e-02	ci left: 2.334970e-01	ci right 2.370464e-01	k: 51759	n:220000
NUF2   220000 perm   55 sec   (3966 perm/sec)   p_kst 2.352682e-01   p_cons 6.427273e-03   p_joint 1.422273e-02

Joint ci ratio: 6.410897e-02	ci left: 1.548258e-02	ci right 1.651228e-02	k: 3678	n:230000
Cons ci ratio: 1.012233e-01	ci left: 6.150210e-03	ci right 6.810146e-03	k: 1489	n:230000
KS ci ratio: 1.473699e-02	ci left: 2.335199e-01	ci right 2.369911e-01	k: 54108	n:230000
NUF2   230000 perm   59 sec   (3912 perm/sec)   p_kst 2.352522e-01   p_cons 6.473913e-03   p_joint 1.599130e-02

Joint ci ratio: 6.355419e-02	ci left: 1.510799e-02	ci right 1.610376e-02	k: 3744	n:240000
Cons ci ratio: 9.940736e-02	ci left: 6.117363e-03	ci right 6.761311e-03	k: 1544	n:240000
KS ci ratio: 1.441995e-02	ci left: 2.337246e-01	ci right 2.371235e-01	k: 56501	n:240000
NUF2   240000 perm   62 sec   (3860 perm/sec)   p_kst 2.354208e-01   p_cons 6.433333e-03   p_joint 1.560000e-02

Outputting figure to mutsig2_images.part000000000118/NUF2.4_1447_240000_0.23542_0.0064333_0.0156.png
                gene_name: NUF2
               theta_stop: 0.099 
                    nperm: 240000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.0064 
      ci_cons_bounds_left: 0.0061 
     ci_cons_bounds_right: 0.0068 
                  p_joint: 0.016 
     ci_joint_bounds_left: 0.015 
    ci_joint_bounds_right: 0.016 

Current progress: 44 percent done.
NUP188
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.071047e-02	ci left: 9.254425e-01	ci right 9.355050e-01	k: 9306	n:10000
KS ci ratio: 2.613224e-02	ci left: 6.831489e-01	ci right 7.013390e-01	k: 6923	n:10000
NUP188   10000 perm   2 sec   (4985 perm/sec)   p_kst 6.923000e-01   p_cons 9.306000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000118/NUP188.4_5426_10000_0.6923_0.9306_1.png
                gene_name: NUP188
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 46 percent done.
NUP210
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.075815e-01	ci left: 1.108601e-01	ci right 1.235638e-01	k: 1171	n:10000
Cons ci ratio: 4.049311e-02	ci left: 4.738613e-01	ci right 4.935482e-01	k: 4837	n:10000
KS ci ratio: 1.701460e-01	ci left: 4.609774e-02	ci right 5.476655e-02	k: 503	n:10000
NUP210   10000 perm   2 sec   (4938 perm/sec)   p_kst 5.030000e-02   p_cons 4.837000e-01   p_joint 1.171000e-01

Joint ci ratio: 8.970741e-02	ci left: 8.322723e-02	ci right 9.109328e-02	k: 1742	n:20000
Cons ci ratio: 2.782202e-02	ci left: 4.911462e-01	ci right 5.050543e-01	k: 9962	n:20000
KS ci ratio: 1.220452e-01	ci left: 4.604902e-02	ci right 5.208294e-02	k: 980	n:20000
NUP210   20000 perm   4 sec   (4538 perm/sec)   p_kst 4.900000e-02   p_cons 4.981000e-01   p_joint 8.710000e-02

Joint ci ratio: 6.141343e-02	ci left: 1.158826e-01	ci right 1.232579e-01	k: 3586	n:30000
Cons ci ratio: 2.284320e-02	ci left: 4.896597e-01	ci right 5.010079e-01	k: 14860	n:30000
KS ci ratio: 9.963243e-02	ci left: 4.661691e-02	ci right 5.153755e-02	k: 1471	n:30000
NUP210   30000 perm   7 sec   (4397 perm/sec)   p_kst 4.903333e-02   p_cons 4.953333e-01   p_joint 1.195333e-01

Outputting figure to mutsig2_images.part000000000118/NUP210.4_5824_30000_0.049033_0.49533_0.11953.png
                gene_name: NUP210
               theta_stop: 0.100 
                    nperm: 30000 
                     p_ks: 0.049 
        ci_ks_bounds_left: 0.047 
       ci_ks_bounds_right: 0.052 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 49 percent done.
NUP214
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.215377e-02	ci left: 3.514787e-01	ci right 3.704024e-01	k: 3609	n:10000
Cons ci ratio: 9.743651e-02	ci left: 1.324713e-01	ci right 1.461396e-01	k: 1392	n:10000
KS ci ratio: 2.226974e-02	ci left: 7.474583e-01	ci right 7.643924e-01	k: 7560	n:10000
NUP214   10000 perm   2 sec   (5111 perm/sec)   p_kst 7.560000e-01   p_cons 1.392000e-01   p_joint 3.609000e-01

Outputting figure to mutsig2_images.part000000000118/NUP214.4_6417_10000_0.756_0.1392_0.3609.png
                gene_name: NUP214
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 51 percent done.
NXPH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.607595e-02	ci left: 4.101016e-01	ci right 4.295451e-01	k: 4198	n:10000
KS ci ratio: 2.136378e-02	ci left: 7.626362e-01	ci right 7.792057e-01	k: 7710	n:10000
NXPH2   10000 perm   1 sec   (7334 perm/sec)   p_kst 7.710000e-01   p_cons 4.198000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000118/NXPH2.4_803_10000_0.771_0.4198_1.png
                gene_name: NXPH2
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 54 percent done.
NTS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.014497e-01	ci left: 1.232714e-01	ci right 1.365450e-01	k: 1298	n:10000
Cons ci ratio: 1.963134e-02	ci left: 7.915161e-01	ci right 8.073091e-01	k: 7995	n:10000
KS ci ratio: 1.300347e-01	ci left: 7.785885e-02	ci right 8.878533e-02	k: 832	n:10000
NTS   10000 perm   1 sec   (7649 perm/sec)   p_kst 8.320000e-02   p_cons 7.995000e-01   p_joint 1.298000e-01

Joint ci ratio: 4.916342e-02	ci left: 2.352343e-01	ci right 2.471410e-01	k: 4823	n:20000
Cons ci ratio: 1.408869e-02	ci left: 7.890344e-01	ci right 8.002798e-01	k: 15894	n:20000
KS ci ratio: 9.216170e-02	ci left: 7.911446e-02	ci right 8.680729e-02	k: 1658	n:20000
NTS   20000 perm   3 sec   (6842 perm/sec)   p_kst 8.290000e-02   p_cons 7.947000e-01   p_joint 2.411500e-01

Outputting figure to mutsig2_images.part000000000118/NTS.3_529_20000_0.0829_0.7947_0.24115.png
                gene_name: NTS
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.083 
        ci_ks_bounds_left: 0.079 
       ci_ks_bounds_right: 0.087 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 56 percent done.
NTSR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.883829e-02	ci left: 8.046079e-01	ci right 8.200097e-01	k: 8124	n:10000
KS ci ratio: 3.882749e-02	ci left: 4.948504e-01	ci right 5.145468e-01	k: 5047	n:10000
NTSR2   10000 perm   1 sec   (7757 perm/sec)   p_kst 5.047000e-01   p_cons 8.124000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000118/NTSR2.3_1249_10000_0.5047_0.8124_1.png
                gene_name: NTSR2
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 59 percent done.
NUDT6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.602870e-02	ci left: 4.105999e-01	ci right 4.300466e-01	k: 4203	n:10000
Cons ci ratio: 6.437385e-02	ci left: 2.617124e-01	ci right 2.792215e-01	k: 2704	n:10000
KS ci ratio: 6.175519e-02	ci left: 2.782460e-01	ci right 2.960782e-01	k: 2871	n:10000
NUDT6   10000 perm   1 sec   (7387 perm/sec)   p_kst 2.871000e-01   p_cons 2.704000e-01   p_joint 4.203000e-01

Outputting figure to mutsig2_images.part000000000118/NUDT6.3_971_10000_0.2871_0.2704_0.4203.png
                gene_name: NUDT6
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 61 percent done.
NUP62
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.331365e-02	ci left: 7.299703e-01	ci right 7.472905e-01	k: 7387	n:10000
Cons ci ratio: 8.556441e-03	ci left: 9.503353e-01	ci right 9.585973e-01	k: 9546	n:10000
KS ci ratio: 5.775266e-02	ci left: 3.061982e-01	ci right 3.245095e-01	k: 3153	n:10000
NUP62   10000 perm   1 sec   (6745 perm/sec)   p_kst 3.153000e-01   p_cons 9.546000e-01   p_joint 7.387000e-01

Outputting figure to mutsig2_images.part000000000118/NUP62.3_1573_10000_0.3153_0.9546_0.7387.png
                gene_name: NUP62
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 63 percent done.
NUP98
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.677805e-02	ci left: 6.725690e-01	ci right 6.909251e-01	k: 6818	n:10000
Cons ci ratio: 4.461276e-02	ci left: 4.258518e-01	ci right 4.453858e-01	k: 4356	n:10000
KS ci ratio: 2.373646e-02	ci left: 7.228992e-01	ci right 7.403656e-01	k: 7317	n:10000
NUP98   10000 perm   2 sec   (5362 perm/sec)   p_kst 7.317000e-01   p_cons 4.356000e-01   p_joint 6.818000e-01

Outputting figure to mutsig2_images.part000000000118/NUP98.3_5603_10000_0.7317_0.4356_0.6818.png
                gene_name: NUP98
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 66 percent done.
NVL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.138285e-02	ci left: 9.168793e-01	ci right 9.274733e-01	k: 9223	n:10000
KS ci ratio: 4.901255e-03	ci left: 9.820981e-01	ci right 9.870138e-01	k: 9847	n:10000
NVL   10000 perm   2 sec   (6446 perm/sec)   p_kst 9.847000e-01   p_cons 9.223000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000118/NVL.3_2663_10000_0.9847_0.9223_1.png
                gene_name: NVL
               theta_stop: 0.011 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
NXPH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.198857e-01	ci left: 2.740624e-02	ci right 3.427066e-02	k: 307	n:10000
Cons ci ratio: 3.602251e-02	ci left: 5.322739e-01	ci right 5.519016e-01	k: 5421	n:10000
KS ci ratio: 2.284450e-01	ci left: 2.532660e-02	ci right 3.195180e-02	k: 285	n:10000
NXPH1   10000 perm   1 sec   (7508 perm/sec)   p_kst 2.850000e-02   p_cons 5.421000e-01   p_joint 3.070000e-02

Joint ci ratio: 1.573407e-01	ci left: 2.772743e-02	ci right 3.251047e-02	k: 601	n:20000
Cons ci ratio: 2.573106e-02	ci left: 5.301596e-01	ci right 5.440296e-01	k: 10742	n:20000
KS ci ratio: 1.651402e-01	ci left: 2.513349e-02	ci right 2.970529e-02	k: 547	n:20000
NXPH1   20000 perm   3 sec   (6684 perm/sec)   p_kst 2.735000e-02   p_cons 5.371000e-01   p_joint 3.005000e-02

Joint ci ratio: 1.316602e-01	ci left: 2.680750e-02	ci right 3.061784e-02	k: 860	n:30000
Cons ci ratio: 2.113971e-02	ci left: 5.283688e-01	ci right 5.396913e-01	k: 16021	n:30000
KS ci ratio: 1.377958e-01	ci left: 2.445406e-02	ci right 2.810513e-02	k: 787	n:30000
NXPH1   30000 perm   5 sec   (6340 perm/sec)   p_kst 2.623333e-02   p_cons 5.340333e-01   p_joint 2.866667e-02

Joint ci ratio: 1.143295e-01	ci left: 2.691545e-02	ci right 3.020347e-02	k: 1141	n:40000
Cons ci ratio: 1.837989e-02	ci left: 5.271705e-01	ci right 5.369748e-01	k: 21283	n:40000
KS ci ratio: 1.199028e-01	ci left: 2.446249e-02	ci right 2.760683e-02	k: 1040	n:40000
NXPH1   40000 perm   7 sec   (6099 perm/sec)   p_kst 2.600000e-02   p_cons 5.320750e-01   p_joint 2.852500e-02

Joint ci ratio: 1.010812e-01	ci left: 2.772210e-02	ci right 3.069289e-02	k: 1459	n:50000
Cons ci ratio: 1.646453e-02	ci left: 5.269343e-01	ci right 5.357021e-01	k: 26566	n:50000
KS ci ratio: 1.059252e-01	ci left: 2.524608e-02	ci right 2.808924e-02	k: 1332	n:50000
NXPH1   50000 perm   8 sec   (5921 perm/sec)   p_kst 2.664000e-02   p_cons 5.313200e-01   p_joint 2.918000e-02

Joint ci ratio: 9.162977e-02	ci left: 2.824205e-02	ci right 3.097036e-02	k: 1775	n:60000
Cons ci ratio: 1.500553e-02	ci left: 5.281310e-01	ci right 5.361325e-01	k: 31928	n:60000
KS ci ratio: 9.609911e-02	ci left: 2.568512e-02	ci right 2.829424e-02	k: 1618	n:60000
NXPH1   60000 perm   10 sec   (5763 perm/sec)   p_kst 2.696667e-02   p_cons 5.321333e-01   p_joint 2.958333e-02

Outputting figure to mutsig2_images.part000000000118/NXPH1.3_824_60000_0.026967_0.53213_0.029583.png
                gene_name: NXPH1
               theta_stop: 0.096 
                    nperm: 60000 
                     p_ks: 0.027 
        ci_ks_bounds_left: 0.026 
       ci_ks_bounds_right: 0.028 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.030 
     ci_joint_bounds_left: 0.028 
    ci_joint_bounds_right: 0.031 

Current progress: 71 percent done.
NUAK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.698126e-02	ci left: 1.979127e-01	ci right 2.138590e-01	k: 2058	n:10000
Cons ci ratio: 2.253522e-02	ci left: 7.430088e-01	ci right 7.600445e-01	k: 7516	n:10000
KS ci ratio: 2.375804e-01	ci left: 2.334629e-02	ci right 2.973355e-02	k: 264	n:10000
NUAK2   10000 perm   1 sec   (6899 perm/sec)   p_kst 2.640000e-02   p_cons 7.516000e-01   p_joint 2.058000e-01

Joint ci ratio: 1.155799e-02	ci left: 8.469012e-01	ci right 8.567963e-01	k: 17038	n:20000
Cons ci ratio: 1.601813e-02	ci left: 7.435850e-01	ci right 7.556423e-01	k: 14993	n:20000
KS ci ratio: 1.630116e-01	ci left: 2.580547e-02	ci right 3.043309e-02	k: 561	n:20000
NUAK2   20000 perm   3 sec   (6209 perm/sec)   p_kst 2.805000e-02   p_cons 7.496500e-01   p_joint 8.519000e-01

Joint ci ratio: 2.330793e-02	ci left: 4.795962e-01	ci right 4.909400e-01	k: 14558	n:30000
Cons ci ratio: 1.307705e-02	ci left: 7.447574e-01	ci right 7.545942e-01	k: 22491	n:30000
KS ci ratio: 1.315030e-01	ci left: 2.687203e-02	ci right 3.068662e-02	k: 862	n:30000
NUAK2   30000 perm   5 sec   (5905 perm/sec)   p_kst 2.873333e-02   p_cons 7.497000e-01   p_joint 4.852667e-01

Joint ci ratio: 8.825691e-02	ci left: 4.492195e-02	ci right 4.909413e-02	k: 1879	n:40000
Cons ci ratio: 1.092062e-02	ci left: 7.589018e-01	ci right 7.672600e-01	k: 30524	n:40000
KS ci ratio: 1.145361e-01	ci left: 2.681823e-02	ci right 3.010070e-02	k: 1137	n:40000
NUAK2   40000 perm   7 sec   (5717 perm/sec)   p_kst 2.842500e-02   p_cons 7.631000e-01   p_joint 4.697500e-02

Joint ci ratio: 6.389838e-02	ci left: 6.775889e-02	ci right 7.225119e-02	k: 3499	n:50000
Cons ci ratio: 9.721774e-03	ci left: 7.610571e-01	ci right 7.685121e-01	k: 38240	n:50000
KS ci ratio: 1.023889e-01	ci left: 2.701992e-02	ci right 2.995517e-02	k: 1423	n:50000
NUAK2   50000 perm   9 sec   (5574 perm/sec)   p_kst 2.846000e-02   p_cons 7.648000e-01   p_joint 6.998000e-02

Joint ci ratio: 5.826396e-02	ci left: 6.810247e-02	ci right 7.220590e-02	k: 4208	n:60000
Cons ci ratio: 8.861981e-03	ci left: 7.619045e-01	ci right 7.687032e-01	k: 45919	n:60000
KS ci ratio: 9.326594e-02	ci left: 2.726453e-02	ci right 2.994799e-02	k: 1715	n:60000
NUAK2   60000 perm   11 sec   (5394 perm/sec)   p_kst 2.858333e-02   p_cons 7.653167e-01   p_joint 7.013333e-02

Outputting figure to mutsig2_images.part000000000118/NUAK2.2_1915_60000_0.028583_0.76532_0.070133.png
                gene_name: NUAK2
               theta_stop: 0.093 
                    nperm: 60000 
                     p_ks: 0.029 
        ci_ks_bounds_left: 0.027 
       ci_ks_bounds_right: 0.030 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.070 
     ci_joint_bounds_left: 0.068 
    ci_joint_bounds_right: 0.072 

Current progress: 73 percent done.
NUDT11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.013935e-01	ci left: 3.281488e-02	ci right 4.025825e-02	k: 364	n:10000
Cons ci ratio: 9.997367e-03	ci left: 9.341299e-01	ci right 9.436124e-01	k: 9390	n:10000
KS ci ratio: 8.347854e-01	ci left: 1.300388e-03	ci right 3.208291e-03	k: 21	n:10000
NUDT11   10000 perm   1 sec   (7751 perm/sec)   p_kst 2.100000e-03   p_cons 9.390000e-01   p_joint 3.640000e-02

Joint ci ratio: 2.448786e-01	ci left: 1.110033e-02	ci right 1.424373e-02	k: 252	n:20000
Cons ci ratio: 6.942919e-03	ci left: 9.376448e-01	ci right 9.442262e-01	k: 18820	n:20000
KS ci ratio: 6.042186e-01	ci left: 1.471505e-03	ci right 2.780040e-03	k: 41	n:20000
NUDT11   20000 perm   3 sec   (6987 perm/sec)   p_kst 2.050000e-03   p_cons 9.410000e-01   p_joint 1.260000e-02

Joint ci ratio: 1.432069e-01	ci left: 2.261928e-02	ci right 2.614032e-02	k: 730	n:30000
Cons ci ratio: 5.651235e-03	ci left: 9.386144e-01	ci right 9.439664e-01	k: 28240	n:30000
KS ci ratio: 4.856811e-01	ci left: 1.643302e-03	ci right 2.723414e-03	k: 64	n:30000
NUDT11   30000 perm   5 sec   (6654 perm/sec)   p_kst 2.133333e-03   p_cons 9.413333e-01   p_joint 2.433333e-02

Joint ci ratio: 1.884616e-01	ci left: 9.691048e-03	ci right 1.173092e-02	k: 427	n:40000
Cons ci ratio: 4.864253e-03	ci left: 9.396646e-01	ci right 9.442710e-01	k: 37680	n:40000
KS ci ratio: 4.378254e-01	ci left: 1.563928e-03	ci right 2.460840e-03	k: 79	n:40000
NUDT11   40000 perm   6 sec   (6420 perm/sec)   p_kst 1.975000e-03   p_cons 9.420000e-01   p_joint 1.067500e-02

Joint ci ratio: 1.123220e-01	ci left: 2.244275e-02	ci right 2.513293e-02	k: 1188	n:50000
Cons ci ratio: 4.368856e-03	ci left: 9.394478e-01	ci right 9.435807e-01	k: 47077	n:50000
KS ci ratio: 3.896565e-01	ci left: 1.627567e-03	ci right 2.432010e-03	k: 100	n:50000
NUDT11   50000 perm   8 sec   (6241 perm/sec)   p_kst 2.000000e-03   p_cons 9.415400e-01   p_joint 2.376000e-02

Joint ci ratio: 1.015485e-01	ci left: 2.300138e-02	ci right 2.547826e-02	k: 1453	n:60000
Cons ci ratio: 3.996197e-03	ci left: 9.394063e-01	ci right 9.431842e-01	k: 56479	n:60000
KS ci ratio: 3.605072e-01	ci left: 1.612962e-03	ci right 2.336571e-03	k: 117	n:60000
NUDT11   60000 perm   10 sec   (6085 perm/sec)   p_kst 1.950000e-03   p_cons 9.413167e-01   p_joint 2.421667e-02

Joint ci ratio: 1.196580e-01	ci left: 1.419573e-02	ci right 1.601622e-02	k: 1056	n:70000
Cons ci ratio: 3.722209e-03	ci left: 9.388669e-01	ci right 9.423822e-01	k: 65845	n:70000
KS ci ratio: 3.408679e-01	ci left: 1.564926e-03	ci right 2.220326e-03	k: 131	n:70000
NUDT11   70000 perm   12 sec   (5935 perm/sec)   p_kst 1.871429e-03   p_cons 9.406429e-01   p_joint 1.508571e-02

Joint ci ratio: 1.125463e-01	ci left: 1.409615e-02	ci right 1.578929e-02	k: 1194	n:80000
Cons ci ratio: 3.475306e-03	ci left: 9.391930e-01	ci right 9.424750e-01	k: 75268	n:80000
KS ci ratio: 3.263705e-01	ci left: 1.506743e-03	ci right 2.105314e-03	k: 143	n:80000
NUDT11   80000 perm   14 sec   (5810 perm/sec)   p_kst 1.787500e-03   p_cons 9.408500e-01   p_joint 1.492500e-02

Joint ci ratio: 1.313442e-01	ci left: 9.155955e-03	ci right 1.045371e-02	k: 881	n:90000
Cons ci ratio: 3.275376e-03	ci left: 9.393283e-01	ci right 9.424210e-01	k: 84680	n:90000
KS ci ratio: 3.096259e-01	ci left: 1.502925e-03	ci right 2.063304e-03	k: 159	n:90000
NUDT11   90000 perm   16 sec   (5692 perm/sec)   p_kst 1.766667e-03   p_cons 9.408889e-01   p_joint 9.788889e-03

Joint ci ratio: 1.261738e-01	ci left: 8.956468e-03	ci right 1.017223e-02	k: 955	n:100000
Cons ci ratio: 3.113103e-03	ci left: 9.391981e-01	ci right 9.421363e-01	k: 94068	n:100000
KS ci ratio: 2.927308e-01	ci left: 1.528290e-03	ci right 2.061274e-03	k: 178	n:100000
NUDT11   100000 perm   18 sec   (5580 perm/sec)   p_kst 1.780000e-03   p_cons 9.406800e-01   p_joint 9.550000e-03

Joint ci ratio: 1.487624e-01	ci left: 5.805916e-03	ci right 6.747673e-03	k: 689	n:110000
Cons ci ratio: 2.979748e-03	ci left: 9.388285e-01	ci right 9.416391e-01	k: 103427	n:110000
KS ci ratio: 2.783302e-01	ci left: 1.549722e-03	ci right 2.058939e-03	k: 197	n:110000
NUDT11   110000 perm   20 sec   (5465 perm/sec)   p_kst 1.790909e-03   p_cons 9.402455e-01   p_joint 6.263636e-03

Joint ci ratio: 1.539338e-01	ci left: 4.961118e-03	ci right 5.796392e-03	k: 644	n:120000
Cons ci ratio: 2.858259e-03	ci left: 9.386752e-01	ci right 9.413702e-01	k: 112804	n:120000
KS ci ratio: 2.652535e-01	ci left: 1.575897e-03	ci right 2.065349e-03	k: 217	n:120000
NUDT11   120000 perm   22 sec   (5360 perm/sec)   p_kst 1.808333e-03   p_cons 9.400333e-01   p_joint 5.366667e-03

Joint ci ratio: 1.367113e-01	ci left: 5.854798e-03	ci right 6.721292e-03	k: 816	n:130000
Cons ci ratio: 2.739240e-03	ci left: 9.390139e-01	ci right 9.415972e-01	k: 122241	n:130000
KS ci ratio: 2.538622e-01	ci left: 1.598518e-03	ci right 2.070302e-03	k: 237	n:130000
NUDT11   130000 perm   25 sec   (5262 perm/sec)   p_kst 1.823077e-03   p_cons 9.403154e-01   p_joint 6.276923e-03

Joint ci ratio: 1.312026e-01	ci left: 5.919859e-03	ci right 6.757928e-03	k: 886	n:140000
Cons ci ratio: 2.636421e-03	ci left: 9.391976e-01	ci right 9.416841e-01	k: 131663	n:140000
KS ci ratio: 2.424148e-01	ci left: 1.638417e-03	ci right 2.096894e-03	k: 260	n:140000
NUDT11   140000 perm   27 sec   (5167 perm/sec)   p_kst 1.857143e-03   p_cons 9.404500e-01   p_joint 6.328571e-03

Joint ci ratio: 1.273184e-01	ci left: 5.880004e-03	ci right 6.685925e-03	k: 941	n:150000
Cons ci ratio: 2.546183e-03	ci left: 9.392775e-01	ci right 9.416787e-01	k: 141073	n:150000
KS ci ratio: 2.353116e-01	ci left: 1.629472e-03	ci right 2.070141e-03	k: 276	n:150000
NUDT11   150000 perm   30 sec   (5076 perm/sec)   p_kst 1.840000e-03   p_cons 9.404867e-01   p_joint 6.273333e-03

Joint ci ratio: 1.071620e-01	ci left: 7.849088e-03	ci right 8.743867e-03	k: 1326	n:160000
Cons ci ratio: 2.464343e-03	ci left: 9.393613e-01	ci right 9.416852e-01	k: 150485	n:160000
KS ci ratio: 2.249841e-01	ci left: 1.680770e-03	ci right 2.112599e-03	k: 302	n:160000
NUDT11   160000 perm   32 sec   (4990 perm/sec)   p_kst 1.887500e-03   p_cons 9.405313e-01   p_joint 8.287500e-03

Joint ci ratio: 1.113667e-01	ci left: 6.832175e-03	ci right 7.643589e-03	k: 1229	n:170000
Cons ci ratio: 2.392431e-03	ci left: 9.393175e-01	ci right 9.415733e-01	k: 159877	n:170000
KS ci ratio: 2.179067e-01	ci left: 1.693026e-03	ci right 2.112488e-03	k: 322	n:170000
NUDT11   170000 perm   35 sec   (4903 perm/sec)   p_kst 1.894118e-03   p_cons 9.404529e-01   p_joint 7.229412e-03

Joint ci ratio: 1.161943e-01	ci left: 5.918092e-03	ci right 6.653501e-03	k: 1130	n:180000
Cons ci ratio: 2.324159e-03	ci left: 9.393917e-01	ci right 9.415830e-01	k: 169289	n:180000
KS ci ratio: 2.108428e-01	ci left: 1.714632e-03	ci right 2.123898e-03	k: 344	n:180000
NUDT11   180000 perm   37 sec   (4822 perm/sec)   p_kst 1.911111e-03   p_cons 9.404944e-01   p_joint 6.277778e-03

Joint ci ratio: 1.092403e-01	ci left: 6.363695e-03	ci right 7.104107e-03	k: 1278	n:190000
Cons ci ratio: 2.264712e-03	ci left: 9.392943e-01	ci right 9.414291e-01	k: 178670	n:190000
KS ci ratio: 2.058337e-01	ci left: 1.709194e-03	ci right 2.106250e-03	k: 361	n:190000
NUDT11   190000 perm   40 sec   (4734 perm/sec)   p_kst 1.900000e-03   p_cons 9.403684e-01   p_joint 6.726316e-03

Joint ci ratio: 8.998192e-02	ci left: 8.976826e-03	ci right 9.827485e-03	k: 1879	n:200000
Cons ci ratio: 2.206644e-03	ci left: 9.393586e-01	ci right 9.414386e-01	k: 188081	n:200000
KS ci ratio: 1.993296e-01	ci left: 1.737651e-03	ci right 2.127012e-03	k: 385	n:200000
NUDT11   200000 perm   43 sec   (4652 perm/sec)   p_kst 1.925000e-03   p_cons 9.404050e-01   p_joint 9.395000e-03

Joint ci ratio: 5.528495e-02	ci left: 2.273416e-02	ci right 2.403142e-02	k: 4909	n:210000
Cons ci ratio: 2.150995e-03	ci left: 9.395134e-01	ci right 9.415411e-01	k: 197512	n:210000
KS ci ratio: 1.941183e-01	ci left: 1.749982e-03	ci right 2.130643e-03	k: 406	n:210000
NUDT11   210000 perm   46 sec   (4574 perm/sec)   p_kst 1.933333e-03   p_cons 9.405333e-01   p_joint 2.337619e-02

Joint ci ratio: 5.893413e-02	ci left: 1.913232e-02	ci right 2.029856e-02	k: 4336	n:220000
Cons ci ratio: 2.104552e-03	ci left: 9.393752e-01	ci right 9.413587e-01	k: 206882	n:220000
KS ci ratio: 1.897402e-01	ci left: 1.752652e-03	ci right 2.124304e-03	k: 425	n:220000
NUDT11   220000 perm   49 sec   (4484 perm/sec)   p_kst 1.931818e-03   p_cons 9.403727e-01   p_joint 1.970909e-02

Joint ci ratio: 5.776319e-02	ci left: 1.906308e-02	ci right 2.020124e-02	k: 4514	n:230000
Cons ci ratio: 2.059784e-03	ci left: 9.393152e-01	ci right 9.412563e-01	k: 216267	n:230000
KS ci ratio: 1.860650e-01	ci left: 1.746885e-03	ci right 2.109329e-03	k: 442	n:230000
NUDT11   230000 perm   52 sec   (4413 perm/sec)   p_kst 1.921739e-03   p_cons 9.402913e-01   p_joint 1.962609e-02

Joint ci ratio: 5.175416e-02	ci left: 2.274129e-02	ci right 2.395360e-02	k: 5602	n:240000
Cons ci ratio: 2.015733e-03	ci left: 9.393741e-01	ci right 9.412736e-01	k: 225679	n:240000
KS ci ratio: 1.820017e-01	ci left: 1.753593e-03	ci right 2.108608e-03	k: 462	n:240000
NUDT11   240000 perm   55 sec   (4341 perm/sec)   p_kst 1.925000e-03   p_cons 9.403292e-01   p_joint 2.334167e-02

Joint ci ratio: 5.641912e-02	ci left: 1.840924e-02	ci right 1.948195e-02	k: 4735	n:250000
Cons ci ratio: 1.975448e-03	ci left: 9.393682e-01	ci right 9.412296e-01	k: 235076	n:250000
KS ci ratio: 1.798804e-01	ci left: 1.725454e-03	ci right 2.070257e-03	k: 473	n:250000
NUDT11   250000 perm   58 sec   (4279 perm/sec)   p_kst 1.892000e-03   p_cons 9.403040e-01   p_joint 1.894000e-02

Joint ci ratio: 5.541785e-02	ci left: 1.835726e-02	ci right 1.940735e-02	k: 4908	n:260000
Cons ci ratio: 1.938281e-03	ci left: 9.393166e-01	ci right 9.411428e-01	k: 244461	n:260000
KS ci ratio: 1.772831e-01	ci left: 1.710529e-03	ci right 2.046884e-03	k: 487	n:260000
NUDT11   260000 perm   62 sec   (4215 perm/sec)   p_kst 1.873077e-03   p_cons 9.402346e-01   p_joint 1.887692e-02

Joint ci ratio: 5.794679e-02	ci left: 1.618348e-02	ci right 1.715287e-02	k: 4499	n:270000
Cons ci ratio: 1.902632e-03	ci left: 9.392990e-01	ci right 9.410915e-01	k: 253854	n:270000
KS ci ratio: 1.722359e-01	ci left: 1.749889e-03	ci right 2.083170e-03	k: 516	n:270000
NUDT11   270000 perm   65 sec   (4153 perm/sec)   p_kst 1.911111e-03   p_cons 9.402000e-01   p_joint 1.666296e-02

Joint ci ratio: 7.246502e-02	ci left: 9.967897e-03	ci right 1.072086e-02	k: 2895	n:280000
Cons ci ratio: 1.871311e-03	ci left: 9.391356e-01	ci right 9.408982e-01	k: 263206	n:280000
KS ci ratio: 1.693141e-01	ci left: 1.748931e-03	ci right 2.075802e-03	k: 534	n:280000
NUDT11   280000 perm   68 sec   (4093 perm/sec)   p_kst 1.907143e-03   p_cons 9.400214e-01   p_joint 1.033929e-02

Joint ci ratio: 5.644577e-02	ci left: 1.589665e-02	ci right 1.682339e-02	k: 4743	n:290000
Cons ci ratio: 1.839843e-03	ci left: 9.390844e-01	ci right 9.408171e-01	k: 272587	n:290000
KS ci ratio: 1.660853e-01	ci left: 1.757998e-03	ci right 2.079672e-03	k: 555	n:290000
NUDT11   290000 perm   72 sec   (4037 perm/sec)   p_kst 1.913793e-03   p_cons 9.399552e-01   p_joint 1.635517e-02

Joint ci ratio: 8.319139e-02	ci left: 7.040917e-03	ci right 7.655324e-03	k: 2203	n:300000
Cons ci ratio: 1.810229e-03	ci left: 9.390167e-01	ci right 9.407214e-01	k: 281962	n:300000
KS ci ratio: 1.630345e-01	ci left: 1.766516e-03	ci right 2.083229e-03	k: 576	n:300000
NUDT11   300000 perm   75 sec   (3981 perm/sec)   p_kst 1.920000e-03   p_cons 9.398733e-01   p_joint 7.343333e-03

Joint ci ratio: 8.824063e-02	ci left: 6.046569e-03	ci right 6.607881e-03	k: 1960	n:310000
Cons ci ratio: 1.781743e-03	ci left: 9.389700e-01	ci right 9.406476e-01	k: 291342	n:310000
KS ci ratio: 1.594792e-01	ci left: 1.790020e-03	ci right 2.103279e-03	k: 602	n:310000
NUDT11   310000 perm   79 sec   (3926 perm/sec)   p_kst 1.941935e-03   p_cons 9.398129e-01   p_joint 6.322581e-03

Joint ci ratio: 8.677025e-02	ci left: 6.062409e-03	ci right 6.615338e-03	k: 2027	n:320000
Cons ci ratio: 1.754995e-03	ci left: 9.388980e-01	ci right 9.405503e-01	k: 300713	n:320000
KS ci ratio: 1.571512e-01	ci left: 1.788104e-03	ci right 2.096028e-03	k: 620	n:320000
NUDT11   320000 perm   83 sec   (3874 perm/sec)   p_kst 1.937500e-03   p_cons 9.397281e-01   p_joint 6.334375e-03

Joint ci ratio: 8.539153e-02	ci left: 6.074396e-03	ci right 6.619176e-03	k: 2093	n:330000
Cons ci ratio: 1.729228e-03	ci left: 9.388428e-01	ci right 9.404707e-01	k: 310088	n:330000
KS ci ratio: 1.550440e-01	ci left: 1.783421e-03	ci right 2.086038e-03	k: 637	n:330000
NUDT11   330000 perm   86 sec   (3823 perm/sec)   p_kst 1.930303e-03   p_cons 9.396606e-01   p_joint 6.342424e-03

Joint ci ratio: 8.417461e-02	ci left: 6.071345e-03	ci right 6.607710e-03	k: 2154	n:340000
Cons ci ratio: 1.704341e-03	ci left: 9.388059e-01	ci right 9.404102e-01	k: 319468	n:340000
KS ci ratio: 1.526693e-01	ci left: 1.787527e-03	ci right 2.085770e-03	k: 657	n:340000
NUDT11   340000 perm   90 sec   (3775 perm/sec)   p_kst 1.932353e-03   p_cons 9.396118e-01   p_joint 6.335294e-03

Joint ci ratio: 8.276431e-02	ci left: 6.104897e-03	ci right 6.634754e-03	k: 2228	n:350000
Cons ci ratio: 1.681977e-03	ci left: 9.386706e-01	ci right 9.402536e-01	k: 328813	n:350000
KS ci ratio: 1.505118e-01	ci left: 1.788681e-03	ci right 2.082520e-03	k: 676	n:350000
NUDT11   350000 perm   94 sec   (3727 perm/sec)   p_kst 1.931429e-03   p_cons 9.394657e-01   p_joint 6.365714e-03

Joint ci ratio: 8.160108e-02	ci left: 6.109441e-03	ci right 6.631886e-03	k: 2292	n:360000
Cons ci ratio: 1.658275e-03	ci left: 9.386939e-01	ci right 9.402546e-01	k: 338212	n:360000
KS ci ratio: 1.485503e-01	ci left: 1.787125e-03	ci right 2.076542e-03	k: 694	n:360000
NUDT11   360000 perm   98 sec   (3682 perm/sec)   p_kst 1.927778e-03   p_cons 9.394778e-01   p_joint 6.366667e-03

Joint ci ratio: 8.022904e-02	ci left: 6.153520e-03	ci right 6.670472e-03	k: 2371	n:370000
Cons ci ratio: 1.635042e-03	ci left: 9.387515e-01	ci right 9.402903e-01	k: 347624	n:370000
KS ci ratio: 1.465605e-01	ci left: 1.788280e-03	ci right 2.073665e-03	k: 713	n:370000
NUDT11   370000 perm   102 sec   (3636 perm/sec)   p_kst 1.927027e-03   p_cons 9.395243e-01   p_joint 6.408108e-03

Joint ci ratio: 8.677095e-02	ci left: 5.110227e-03	ci right 5.576312e-03	k: 2029	n:380000
Cons ci ratio: 1.613879e-03	ci left: 9.387267e-01	ci right 9.402455e-01	k: 357006	n:380000
KS ci ratio: 1.447476e-01	ci left: 1.786862e-03	ci right 2.068189e-03	k: 731	n:380000
NUDT11   380000 perm   106 sec   (3592 perm/sec)   p_kst 1.923684e-03   p_cons 9.394895e-01   p_joint 5.339474e-03

Joint ci ratio: 8.553622e-02	ci left: 5.127220e-03	ci right 5.587868e-03	k: 2088	n:390000
Cons ci ratio: 1.592690e-03	ci left: 9.387627e-01	ci right 9.402616e-01	k: 366411	n:390000
KS ci ratio: 1.429049e-01	ci left: 1.788010e-03	ci right 2.065628e-03	k: 750	n:390000
NUDT11   390000 perm   110 sec   (3550 perm/sec)   p_kst 1.923077e-03   p_cons 9.395154e-01   p_joint 5.353846e-03

Joint ci ratio: 7.707602e-02	ci left: 6.177276e-03	ci right 6.674914e-03	k: 2569	n:400000
Cons ci ratio: 1.573663e-03	ci left: 9.386989e-01	ci right 9.401797e-01	k: 375777	n:400000
KS ci ratio: 1.413148e-01	ci left: 1.784298e-03	ci right 2.057998e-03	k: 767	n:400000
NUDT11   400000 perm   114 sec   (3508 perm/sec)   p_kst 1.917500e-03   p_cons 9.394425e-01   p_joint 6.422500e-03

Joint ci ratio: 7.629441e-02	ci left: 6.153397e-03	ci right 6.643862e-03	k: 2622	n:410000
Cons ci ratio: 1.554800e-03	ci left: 9.386752e-01	ci right 9.401381e-01	k: 385158	n:410000
KS ci ratio: 1.393327e-01	ci left: 1.792554e-03	ci right 2.063343e-03	k: 789	n:410000
NUDT11   410000 perm   118 sec   (3467 perm/sec)   p_kst 1.924390e-03   p_cons 9.394098e-01   p_joint 6.395122e-03

Joint ci ratio: 7.549352e-02	ci left: 6.137689e-03	ci right 6.621540e-03	k: 2678	n:420000
Cons ci ratio: 1.536085e-03	ci left: 9.386910e-01	ci right 9.401363e-01	k: 394555	n:420000
KS ci ratio: 1.377722e-01	ci left: 1.791245e-03	ci right 2.058558e-03	k: 807	n:420000
NUDT11   420000 perm   123 sec   (3427 perm/sec)   p_kst 1.921429e-03   p_cons 9.394167e-01   p_joint 6.376190e-03

Joint ci ratio: 7.473108e-02	ci left: 6.120454e-03	ci right 6.597862e-03	k: 2733	n:430000
Cons ci ratio: 1.518620e-03	ci left: 9.386617e-01	ci right 9.400905e-01	k: 403933	n:430000
KS ci ratio: 1.361805e-01	ci left: 1.792261e-03	ci right 2.056384e-03	k: 826	n:430000
NUDT11   430000 perm   127 sec   (3387 perm/sec)   p_kst 1.920930e-03   p_cons 9.393791e-01   p_joint 6.355814e-03

Joint ci ratio: 7.397793e-02	ci left: 6.106258e-03	ci right 6.577551e-03	k: 2789	n:440000
Cons ci ratio: 1.500837e-03	ci left: 9.387024e-01	ci right 9.401145e-01	k: 413341	n:440000
KS ci ratio: 1.349626e-01	ci left: 1.784461e-03	ci right 2.044895e-03	k: 841	n:440000
NUDT11   440000 perm   131 sec   (3348 perm/sec)   p_kst 1.911364e-03   p_cons 9.394114e-01   p_joint 6.338636e-03

Joint ci ratio: 7.309219e-02	ci left: 6.118897e-03	ci right 6.585271e-03	k: 2857	n:450000
Cons ci ratio: 1.484099e-03	ci left: 9.387079e-01	ci right 9.401042e-01	k: 422734	n:450000
KS ci ratio: 1.333876e-01	ci left: 1.787760e-03	ci right 2.045388e-03	k: 861	n:450000
NUDT11   450000 perm   136 sec   (3310 perm/sec)   p_kst 1.913333e-03   p_cons 9.394089e-01   p_joint 6.348889e-03

Joint ci ratio: 9.125222e-02	ci left: 3.813268e-03	ci right 4.179980e-03	k: 1837	n:460000
Cons ci ratio: 1.467825e-03	ci left: 9.387198e-01	ci right 9.401008e-01	k: 432130	n:460000
KS ci ratio: 1.318665e-01	ci left: 1.790931e-03	ci right 2.045843e-03	k: 881	n:460000
NUDT11   460000 perm   141 sec   (3274 perm/sec)   p_kst 1.915217e-03   p_cons 9.394130e-01   p_joint 3.993478e-03

Joint ci ratio: 5.447364e-02	ci left: 1.060091e-02	ci right 1.119663e-02	k: 5121	n:470000
Cons ci ratio: 1.451993e-03	ci left: 9.387376e-01	ci right 9.401038e-01	k: 441529	n:470000
KS ci ratio: 1.304688e-01	ci left: 1.791925e-03	ci right 2.044065e-03	k: 900	n:470000
NUDT11   470000 perm   145 sec   (3237 perm/sec)   p_kst 1.914894e-03   p_cons 9.394234e-01   p_joint 1.089574e-02

Joint ci ratio: 6.547373e-02	ci left: 7.169728e-03	ci right 7.657080e-03	k: 3557	n:480000
Cons ci ratio: 1.436637e-03	ci left: 9.387569e-01	ci right 9.401086e-01	k: 450929	n:480000
KS ci ratio: 1.291145e-01	ci left: 1.792892e-03	ci right 2.042349e-03	k: 919	n:480000
NUDT11   480000 perm   150 sec   (3201 perm/sec)   p_kst 1.914583e-03   p_cons 9.394354e-01   p_joint 7.410417e-03

Joint ci ratio: 5.331482e-02	ci left: 1.062122e-02	ci right 1.120499e-02	k: 5346	n:490000
Cons ci ratio: 1.421808e-03	ci left: 9.387714e-01	ci right 9.401091e-01	k: 460327	n:490000
KS ci ratio: 1.279382e-01	ci left: 1.789880e-03	ci right 2.036477e-03	k: 936	n:490000
NUDT11   490000 perm   155 sec   (3168 perm/sec)   p_kst 1.910204e-03   p_cons 9.394429e-01   p_joint 1.091020e-02

Joint ci ratio: 5.282855e-02	ci left: 1.060416e-02	ci right 1.118153e-02	k: 5445	n:500000
Cons ci ratio: 1.408543e-03	ci left: 9.386949e-01	ci right 9.400200e-01	k: 469680	n:500000
KS ci ratio: 1.267934e-01	ci left: 1.786999e-03	ci right 2.030830e-03	k: 953	n:500000
NUDT11   500000 perm   159 sec   (3135 perm/sec)   p_kst 1.906000e-03   p_cons 9.393600e-01   p_joint 1.089000e-02

Joint ci ratio: 5.233626e-02	ci left: 1.059554e-02	ci right 1.116690e-02	k: 5548	n:510000
Cons ci ratio: 1.394319e-03	ci left: 9.387299e-01	ci right 9.400416e-01	k: 479088	n:510000
KS ci ratio: 1.250993e-01	ci left: 1.801335e-03	ci right 2.043595e-03	k: 979	n:510000
NUDT11   510000 perm   164 sec   (3102 perm/sec)   p_kst 1.919608e-03   p_cons 9.393882e-01   p_joint 1.087843e-02

Joint ci ratio: 5.152670e-02	ci left: 1.072397e-02	ci right 1.129304e-02	k: 5723	n:520000
Cons ci ratio: 1.381637e-03	ci left: 9.386708e-01	ci right 9.399705e-01	k: 488448	n:520000
KS ci ratio: 1.239040e-01	ci left: 1.802094e-03	ci right 2.041971e-03	k: 998	n:520000
NUDT11   520000 perm   169 sec   (3070 perm/sec)   p_kst 1.919231e-03   p_cons 9.393231e-01   p_joint 1.100577e-02

Joint ci ratio: 5.100769e-02	ci left: 1.073956e-02	ci right 1.130354e-02	k: 5840	n:530000
Cons ci ratio: 1.368908e-03	ci left: 9.386462e-01	ci right 9.399339e-01	k: 497825	n:530000
KS ci ratio: 1.229846e-01	ci left: 1.795520e-03	ci right 2.032619e-03	k: 1013	n:530000
NUDT11   530000 perm   174 sec   (3038 perm/sec)   p_kst 1.911321e-03   p_cons 9.392925e-01   p_joint 1.101887e-02

Joint ci ratio: 3.635059e-02	ci left: 2.069814e-02	ci right 2.146627e-02	k: 11383	n:540000
Cons ci ratio: 1.357030e-03	ci left: 9.385798e-01	ci right 9.398562e-01	k: 507179	n:540000
KS ci ratio: 1.211454e-01	ci left: 1.817926e-03	ci right 2.054136e-03	k: 1044	n:540000
NUDT11   540000 perm   180 sec   (3007 perm/sec)   p_kst 1.933333e-03   p_cons 9.392204e-01   p_joint 2.107963e-02

Joint ci ratio: 3.602944e-02	ci left: 2.068936e-02	ci right 2.145025e-02	k: 11587	n:550000
Cons ci ratio: 1.344320e-03	ci left: 9.386127e-01	ci right 9.398772e-01	k: 516586	n:550000
KS ci ratio: 1.198334e-01	ci left: 1.825431e-03	ci right 2.059865e-03	k: 1067	n:550000
NUDT11   550000 perm   185 sec   (2976 perm/sec)   p_kst 1.940000e-03   p_cons 9.392473e-01   p_joint 2.106727e-02

Joint ci ratio: 3.570273e-02	ci left: 2.069685e-02	ci right 2.145097e-02	k: 11800	n:560000
Cons ci ratio: 1.331876e-03	ci left: 9.386517e-01	ci right 9.399045e-01	k: 525997	n:560000
KS ci ratio: 1.186177e-01	ci left: 1.830948e-03	ci right 2.063539e-03	k: 1089	n:560000
NUDT11   560000 perm   190 sec   (2946 perm/sec)   p_kst 1.944643e-03   p_cons 9.392804e-01   p_joint 2.107143e-02

Joint ci ratio: 3.538024e-02	ci left: 2.070933e-02	ci right 2.145695e-02	k: 12016	n:570000
Cons ci ratio: 1.319528e-03	ci left: 9.387105e-01	ci right 9.399517e-01	k: 535420	n:570000
KS ci ratio: 1.174911e-01	ci left: 1.834581e-03	ci right 2.065265e-03	k: 1110	n:570000
NUDT11   570000 perm   195 sec   (2917 perm/sec)   p_kst 1.947368e-03   p_cons 9.393333e-01   p_joint 2.108070e-02

Joint ci ratio: 3.510005e-02	ci left: 2.068209e-02	ci right 2.142270e-02	k: 12209	n:580000
Cons ci ratio: 1.307734e-03	ci left: 9.387483e-01	ci right 9.399784e-01	k: 544832	n:580000
KS ci ratio: 1.165509e-01	ci left: 1.833076e-03	ci right 2.061600e-03	k: 1128	n:580000
NUDT11   580000 perm   201 sec   (2888 perm/sec)   p_kst 1.944828e-03   p_cons 9.393655e-01   p_joint 2.105000e-02

Joint ci ratio: 3.480493e-02	ci left: 2.068101e-02	ci right 2.141523e-02	k: 12417	n:590000
Cons ci ratio: 1.296172e-03	ci left: 9.387916e-01	ci right 9.400109e-01	k: 554248	n:590000
KS ci ratio: 1.160391e-01	ci left: 1.818462e-03	ci right 2.044101e-03	k: 1138	n:590000
NUDT11   590000 perm   206 sec   (2861 perm/sec)   p_kst 1.928814e-03   p_cons 9.394034e-01   p_joint 2.104576e-02

Joint ci ratio: 3.368444e-02	ci left: 2.170140e-02	ci right 2.244656e-02	k: 13243	n:600000
Cons ci ratio: 1.285213e-03	ci left: 9.388067e-01	ci right 9.400157e-01	k: 563648	n:600000
KS ci ratio: 1.147363e-01	ci left: 1.830238e-03	ci right 2.054615e-03	k: 1164	n:600000
NUDT11   600000 perm   212 sec   (2833 perm/sec)   p_kst 1.940000e-03   p_cons 9.394133e-01   p_joint 2.207167e-02

Joint ci ratio: 3.341320e-02	ci left: 2.169676e-02	ci right 2.243565e-02	k: 13459	n:610000
Cons ci ratio: 1.275243e-03	ci left: 9.387572e-01	ci right 9.399567e-01	k: 573009	n:610000
KS ci ratio: 1.137158e-01	ci left: 1.833677e-03	ci right 2.056342e-03	k: 1185	n:610000
NUDT11   610000 perm   217 sec   (2807 perm/sec)   p_kst 1.942623e-03   p_cons 9.393590e-01   p_joint 2.206393e-02

Joint ci ratio: 2.880386e-02	ci left: 2.858850e-02	ci right 2.942558e-02	k: 17983	n:620000
Cons ci ratio: 1.264462e-03	ci left: 9.388032e-01	ci right 9.399927e-01	k: 582428	n:620000
KS ci ratio: 1.125820e-01	ci left: 1.841716e-03	ci right 2.062979e-03	k: 1209	n:620000
NUDT11   620000 perm   223 sec   (2780 perm/sec)   p_kst 1.950000e-03   p_cons 9.394000e-01   p_joint 2.900484e-02

Joint ci ratio: 2.825591e-02	ci left: 2.922543e-02	ci right 3.006462e-02	k: 18675	n:630000
Cons ci ratio: 1.254438e-03	ci left: 9.388032e-01	ci right 9.399832e-01	k: 591819	n:630000
KS ci ratio: 1.112108e-01	ci left: 1.858769e-03	ci right 2.079184e-03	k: 1239	n:630000
NUDT11   630000 perm   229 sec   (2752 perm/sec)   p_kst 1.966667e-03   p_cons 9.393952e-01   p_joint 2.964286e-02

Joint ci ratio: 2.805597e-02	ci left: 2.918458e-02	ci right 3.001656e-02	k: 18943	n:640000
Cons ci ratio: 1.244052e-03	ci left: 9.388582e-01	ci right 9.400284e-01	k: 601245	n:640000
KS ci ratio: 1.103685e-01	ci left: 1.858591e-03	ci right 2.077207e-03	k: 1258	n:640000
NUDT11   640000 perm   235 sec   (2726 perm/sec)   p_kst 1.965625e-03   p_cons 9.394453e-01   p_joint 2.959844e-02

Joint ci ratio: 2.785424e-02	ci left: 2.915722e-02	ci right 2.998236e-02	k: 19219	n:650000
Cons ci ratio: 1.234135e-03	ci left: 9.388914e-01	ci right 9.400524e-01	k: 610658	n:650000
KS ci ratio: 1.096742e-01	ci left: 1.853935e-03	ci right 2.070542e-03	k: 1274	n:650000
NUDT11   650000 perm   241 sec   (2701 perm/sec)   p_kst 1.960000e-03   p_cons 9.394738e-01   p_joint 2.956769e-02

Joint ci ratio: 2.765096e-02	ci left: 2.914276e-02	ci right 2.996137e-02	k: 19503	n:660000
Cons ci ratio: 1.224713e-03	ci left: 9.388993e-01	ci right 9.400514e-01	k: 620055	n:660000
KS ci ratio: 1.086140e-01	ci left: 1.862690e-03	ci right 2.078082e-03	k: 1299	n:660000
NUDT11   660000 perm   247 sec   (2676 perm/sec)   p_kst 1.968182e-03   p_cons 9.394773e-01   p_joint 2.955000e-02

Joint ci ratio: 2.745563e-02	ci left: 2.912134e-02	ci right 2.993348e-02	k: 19782	n:670000
Cons ci ratio: 1.215535e-03	ci left: 9.389040e-01	ci right 9.400474e-01	k: 629450	n:670000
KS ci ratio: 1.079932e-01	ci left: 1.856670e-03	ci right 2.070061e-03	k: 1314	n:670000
NUDT11   670000 perm   253 sec   (2652 perm/sec)   p_kst 1.961194e-03   p_cons 9.394776e-01   p_joint 2.952537e-02

Joint ci ratio: 2.725319e-02	ci left: 2.912394e-02	ci right 2.993007e-02	k: 20077	n:680000
Cons ci ratio: 1.206498e-03	ci left: 9.389145e-01	ci right 9.400494e-01	k: 638849	n:680000
KS ci ratio: 1.070607e-01	ci left: 1.862280e-03	ci right 2.074351e-03	k: 1337	n:680000
NUDT11   680000 perm   259 sec   (2626 perm/sec)   p_kst 1.966176e-03   p_cons 9.394838e-01   p_joint 2.952500e-02

Joint ci ratio: 2.707297e-02	ci left: 2.908906e-02	ci right 2.988881e-02	k: 20346	n:690000
Cons ci ratio: 1.197614e-03	ci left: 9.389291e-01	ci right 9.400556e-01	k: 648251	n:690000
KS ci ratio: 1.061519e-01	ci left: 1.867736e-03	ci right 2.078510e-03	k: 1360	n:690000
NUDT11   690000 perm   265 sec   (2603 perm/sec)   p_kst 1.971014e-03   p_cons 9.394942e-01   p_joint 2.948696e-02

Joint ci ratio: 2.688687e-02	ci left: 2.907505e-02	ci right 2.986885e-02	k: 20629	n:700000
Cons ci ratio: 1.189730e-03	ci left: 9.388658e-01	ci right 9.399849e-01	k: 657599	n:700000
KS ci ratio: 1.053805e-01	ci left: 1.868869e-03	ci right 2.078144e-03	k: 1380	n:700000
NUDT11   700000 perm   271 sec   (2581 perm/sec)   p_kst 1.971429e-03   p_cons 9.394271e-01   p_joint 2.947000e-02

Joint ci ratio: 3.396345e-02	ci left: 1.810402e-02	ci right 1.873090e-02	k: 13075	n:710000
Cons ci ratio: 1.181545e-03	ci left: 9.388482e-01	ci right 9.399595e-01	k: 666978	n:710000
KS ci ratio: 1.045135e-01	ci left: 1.874092e-03	ci right 2.082118e-03	k: 1403	n:710000
NUDT11   710000 perm   277 sec   (2559 perm/sec)   p_kst 1.976056e-03   p_cons 9.394056e-01   p_joint 1.841549e-02

Joint ci ratio: 3.373477e-02	ci left: 1.809771e-02	ci right 1.872007e-02	k: 13253	n:720000
Cons ci ratio: 1.173956e-03	ci left: 9.387892e-01	ci right 9.398933e-01	k: 676327	n:720000
KS ci ratio: 1.037405e-01	ci left: 1.876470e-03	ci right 2.083126e-03	k: 1424	n:720000
NUDT11   720000 perm   284 sec   (2536 perm/sec)   p_kst 1.977778e-03   p_cons 9.393431e-01   p_joint 1.840694e-02

Joint ci ratio: 3.351572e-02	ci left: 1.808614e-02	ci right 1.870399e-02	k: 13427	n:730000
Cons ci ratio: 1.165585e-03	ci left: 9.388227e-01	ci right 9.399190e-01	k: 685742	n:730000
KS ci ratio: 1.029130e-01	ci left: 1.881458e-03	ci right 2.086910e-03	k: 1447	n:730000
NUDT11   730000 perm   290 sec   (2515 perm/sec)   p_kst 1.982192e-03   p_cons 9.393726e-01   p_joint 1.839315e-02

Joint ci ratio: 2.614817e-02	ci left: 2.909014e-02	ci right 2.986220e-02	k: 21811	n:740000
Cons ci ratio: 1.157651e-03	ci left: 9.388296e-01	ci right 9.399184e-01	k: 695138	n:740000
KS ci ratio: 1.018280e-01	ci left: 1.896853e-03	ci right 2.101672e-03	k: 1478	n:740000
NUDT11   740000 perm   297 sec   (2494 perm/sec)   p_kst 1.997297e-03   p_cons 9.393757e-01   p_joint 2.947432e-02

Joint ci ratio: 3.304862e-02	ci left: 1.810894e-02	ci right 1.871878e-02	k: 13809	n:750000
Cons ci ratio: 1.149850e-03	ci left: 9.388389e-01	ci right 9.399204e-01	k: 704536	n:750000
KS ci ratio: 1.011802e-01	ci left: 1.896251e-03	ci right 2.099626e-03	k: 1497	n:750000
NUDT11   750000 perm   303 sec   (2473 perm/sec)   p_kst 1.996000e-03   p_cons 9.393813e-01   p_joint 1.841200e-02

Joint ci ratio: 3.282346e-02	ci left: 1.811861e-02	ci right 1.872454e-02	k: 13999	n:760000
Cons ci ratio: 1.141954e-03	ci left: 9.388731e-01	ci right 9.399472e-01	k: 713953	n:760000
KS ci ratio: 1.007445e-01	ci left: 1.887974e-03	ci right 2.089537e-03	k: 1510	n:760000
NUDT11   760000 perm   310 sec   (2453 perm/sec)   p_kst 1.986842e-03   p_cons 9.394118e-01   p_joint 1.841974e-02

Joint ci ratio: 3.262042e-02	ci left: 1.810872e-02	ci right 1.871050e-02	k: 14174	n:770000
Cons ci ratio: 1.134646e-03	ci left: 9.388635e-01	ci right 9.399306e-01	k: 723337	n:770000
KS ci ratio: 1.000516e-01	ci left: 1.890042e-03	ci right 2.090357e-03	k: 1531	n:770000
NUDT11   770000 perm   317 sec   (2431 perm/sec)   p_kst 1.988312e-03   p_cons 9.393987e-01   p_joint 1.840779e-02

Joint ci ratio: 3.240844e-02	ci left: 1.811308e-02	ci right 1.871102e-02	k: 14360	n:780000
Cons ci ratio: 1.126917e-03	ci left: 9.389107e-01	ci right 9.399706e-01	k: 732765	n:780000
KS ci ratio: 9.934070e-02	ci left: 1.893313e-03	ci right 2.092466e-03	k: 1553	n:780000
NUDT11   780000 perm   324 sec   (2409 perm/sec)   p_kst 1.991026e-03   p_cons 9.394423e-01   p_joint 1.841026e-02

Outputting figure to mutsig2_images.part000000000118/NUDT11.2_503_780000_0.001991_0.93944_0.01841.png
                gene_name: NUDT11
               theta_stop: 0.099 
                    nperm: 780000 
                     p_ks: 0.0020 
        ci_ks_bounds_left: 0.0019 
       ci_ks_bounds_right: 0.0021 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.018 
     ci_joint_bounds_left: 0.018 
    ci_joint_bounds_right: 0.019 

Current progress: 76 percent done.
NUDT12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.913930e-02	ci left: 4.908512e-01	ci right 5.105484e-01	k: 5007	n:10000
Cons ci ratio: 2.623040e-02	ci left: 6.815364e-01	ci right 6.997525e-01	k: 6907	n:10000
KS ci ratio: 4.262781e-02	ci left: 4.482980e-01	ci right 4.679264e-01	k: 4581	n:10000
NUDT12   10000 perm   1 sec   (7368 perm/sec)   p_kst 4.581000e-01   p_cons 6.907000e-01   p_joint 5.007000e-01

Outputting figure to mutsig2_images.part000000000118/NUDT12.2_1413_10000_0.4581_0.6907_0.5007.png
                gene_name: NUDT12
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 78 percent done.
NUDT19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.566713e-02	ci left: 6.908102e-01	ci right 7.088733e-01	k: 6999	n:10000
Cons ci ratio: 2.820846e-02	ci left: 6.494124e-01	ci right 6.680951e-01	k: 6588	n:10000
KS ci ratio: 2.329554e-02	ci left: 7.302734e-01	ci right 7.475872e-01	k: 7390	n:10000
NUDT19   10000 perm   1 sec   (7554 perm/sec)   p_kst 7.390000e-01   p_cons 6.588000e-01   p_joint 6.999000e-01

Outputting figure to mutsig2_images.part000000000118/NUDT19.2_1140_10000_0.739_0.6588_0.6999.png
                gene_name: NUDT19
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 80 percent done.
NUDT22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.170387e-02	ci left: 4.591793e-01	ci right 4.788388e-01	k: 4690	n:10000
Cons ci ratio: 3.522458e-02	ci left: 5.433915e-01	ci right 5.629775e-01	k: 5532	n:10000
KS ci ratio: 5.763252e-02	ci left: 3.070909e-01	ci right 3.254162e-01	k: 3162	n:10000
NUDT22   10000 perm   1 sec   (7710 perm/sec)   p_kst 3.162000e-01   p_cons 5.532000e-01   p_joint 4.690000e-01

Outputting figure to mutsig2_images.part000000000118/NUDT22.2_932_10000_0.3162_0.5532_0.469.png
                gene_name: NUDT22
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 83 percent done.
NUDT9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.517473e-02	ci left: 5.440928e-01	ci right 5.636758e-01	k: 5539	n:10000
Cons ci ratio: 6.141010e-02	ci left: 2.805242e-01	ci right 2.983986e-01	k: 2894	n:10000
KS ci ratio: 1.635851e-01	ci left: 4.984277e-02	ci right 5.881908e-02	k: 542	n:10000
NUDT9   10000 perm   1 sec   (7878 perm/sec)   p_kst 5.420000e-02   p_cons 2.894000e-01   p_joint 5.539000e-01

Joint ci ratio: 5.289916e-03	ci left: 9.622560e-01	ci right 9.674077e-01	k: 19298	n:20000
Cons ci ratio: 4.317173e-02	ci left: 2.855551e-01	ci right 2.982054e-01	k: 5837	n:20000
KS ci ratio: 1.150598e-01	ci left: 5.168573e-02	ci right 5.804447e-02	k: 1096	n:20000
NUDT9   20000 perm   3 sec   (6973 perm/sec)   p_kst 5.480000e-02   p_cons 2.918500e-01   p_joint 9.649000e-01

Joint ci ratio: 2.688013e-02	ci left: 4.092166e-01	ci right 4.203999e-01	k: 12444	n:30000
Cons ci ratio: 3.714148e-02	ci left: 2.657110e-01	ci right 2.758001e-01	k: 8122	n:30000
KS ci ratio: 9.557049e-02	ci left: 5.055674e-02	ci right 5.566357e-02	k: 1592	n:30000
NUDT9   30000 perm   5 sec   (6621 perm/sec)   p_kst 5.306667e-02   p_cons 2.707333e-01   p_joint 4.148000e-01

Outputting figure to mutsig2_images.part000000000118/NUDT9.2_1085_30000_0.053067_0.27073_0.4148.png
                gene_name: NUDT9
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.053 
        ci_ks_bounds_left: 0.051 
       ci_ks_bounds_right: 0.056 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.42 

Current progress: 85 percent done.
NUFIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.153289e-02	ci left: 9.149216e-01	ci right 9.256321e-01	k: 9204	n:10000
KS ci ratio: 4.694732e-02	ci left: 4.010349e-01	ci right 4.204171e-01	k: 4107	n:10000
NUFIP1   10000 perm   1 sec   (7263 perm/sec)   p_kst 4.107000e-01   p_cons 9.204000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000118/NUFIP1.2_1528_10000_0.4107_0.9204_1.png
                gene_name: NUFIP1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
NUP107
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.711004e-02	ci left: 8.326658e-01	ci right 8.471356e-01	k: 8400	n:10000
Cons ci ratio: 5.126149e-02	ci left: 3.594324e-01	ci right 3.784440e-01	k: 3689	n:10000
KS ci ratio: 1.815547e-02	ci left: 8.157822e-01	ci right 8.308289e-01	k: 8234	n:10000
NUP107   10000 perm   2 sec   (6626 perm/sec)   p_kst 8.234000e-01   p_cons 3.689000e-01   p_joint 8.400000e-01

Outputting figure to mutsig2_images.part000000000118/NUP107.2_2890_10000_0.8234_0.3689_0.84.png
                gene_name: NUP107
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 90 percent done.
NUPL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.213381e-01	ci left: 8.873809e-02	ci right 1.002994e-01	k: 944	n:10000
Cons ci ratio: 8.159911e-02	ci left: 1.797935e-01	ci right 1.951890e-01	k: 1874	n:10000
KS ci ratio: 6.465227e-02	ci left: 2.600302e-01	ci right 2.775047e-01	k: 2687	n:10000
NUPL2   10000 perm   1 sec   (7509 perm/sec)   p_kst 2.687000e-01   p_cons 1.874000e-01   p_joint 9.440000e-02

Joint ci ratio: 6.453358e-02	ci left: 1.507004e-01	ci right 1.607999e-01	k: 3114	n:20000
Cons ci ratio: 5.833271e-02	ci left: 1.787993e-01	ci right 1.895926e-01	k: 3683	n:20000
KS ci ratio: 4.629315e-02	ci left: 2.577517e-01	ci right 2.700170e-01	k: 5277	n:20000
NUPL2   20000 perm   3 sec   (6698 perm/sec)   p_kst 2.638500e-01   p_cons 1.841500e-01   p_joint 1.557000e-01

Outputting figure to mutsig2_images.part000000000118/NUPL2.2_1300_20000_0.26385_0.18415_0.1557.png
                gene_name: NUPL2
               theta_stop: 0.065 
                    nperm: 20000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 93 percent done.
NUSAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.188359e-02	ci left: 3.538645e-01	ci right 3.728152e-01	k: 3633	n:10000
Cons ci ratio: 1.858267e-01	ci left: 3.863000e-02	ci right 4.663920e-02	k: 425	n:10000
KS ci ratio: 3.007699e-02	ci left: 6.198475e-01	ci right 6.388771e-01	k: 6294	n:10000
NUSAP1   10000 perm   1 sec   (7415 perm/sec)   p_kst 6.294000e-01   p_cons 4.250000e-02   p_joint 3.633000e-01

Joint ci ratio: 4.722872e-02	ci left: 2.501112e-01	ci right 2.622597e-01	k: 5123	n:20000
Cons ci ratio: 1.357013e-01	ci left: 3.732625e-02	ci right 4.280850e-02	k: 800	n:20000
KS ci ratio: 2.129373e-02	ci left: 6.221112e-01	ci right 6.355513e-01	k: 12577	n:20000
NUSAP1   20000 perm   3 sec   (6632 perm/sec)   p_kst 6.288500e-01   p_cons 4.000000e-02   p_joint 2.561500e-01

Joint ci ratio: 6.139399e-02	ci left: 1.159484e-01	ci right 1.233255e-01	k: 3588	n:30000
Cons ci ratio: 1.093625e-01	ci left: 3.881651e-02	ci right 4.333958e-02	k: 1231	n:30000
KS ci ratio: 1.743436e-02	ci left: 6.220672e-01	ci right 6.330414e-01	k: 18827	n:30000
NUSAP1   30000 perm   5 sec   (6308 perm/sec)   p_kst 6.275667e-01   p_cons 4.103333e-02   p_joint 1.196000e-01

Joint ci ratio: 5.439866e-02	ci left: 1.117657e-01	ci right 1.180404e-01	k: 4595	n:40000
Cons ci ratio: 9.586298e-02	ci left: 3.819829e-02	ci right 4.206884e-02	k: 1604	n:40000
KS ci ratio: 1.509037e-02	ci left: 6.230663e-01	ci right 6.325652e-01	k: 25113	n:40000
NUSAP1   40000 perm   7 sec   (6083 perm/sec)   p_kst 6.278250e-01   p_cons 4.010000e-02   p_joint 1.148750e-01

Outputting figure to mutsig2_images.part000000000118/NUSAP1.2_1370_40000_0.62782_0.0401_0.11488.png
                gene_name: NUSAP1
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.040 
      ci_cons_bounds_left: 0.038 
     ci_cons_bounds_right: 0.042 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 95 percent done.
NXF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.492253e-02	ci left: 4.224616e-01	ci right 4.419779e-01	k: 4322	n:10000
Cons ci ratio: 5.246035e-02	ci left: 3.487950e-01	ci right 3.676877e-01	k: 3582	n:10000
KS ci ratio: 6.654654e-02	ci left: 2.489515e-01	ci right 2.661899e-01	k: 2575	n:10000
NXF1   10000 perm   1 sec   (7288 perm/sec)   p_kst 2.575000e-01   p_cons 3.582000e-01   p_joint 4.322000e-01

Outputting figure to mutsig2_images.part000000000118/NXF1.2_1999_10000_0.2575_0.3582_0.4322.png
                gene_name: NXF1
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 98 percent done.
NXF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.624658e-02	ci left: 4.083079e-01	ci right 4.277399e-01	k: 4180	n:10000
Cons ci ratio: 3.917845e-02	ci left: 4.903513e-01	ci right 5.100486e-01	k: 5002	n:10000
KS ci ratio: 1.163709e-01	ci left: 9.593994e-02	ci right 1.078931e-01	k: 1018	n:10000
NXF3   10000 perm   1 sec   (7163 perm/sec)   p_kst 1.018000e-01   p_cons 5.002000e-01   p_joint 4.180000e-01

Joint ci ratio: 3.747306e-02	ci left: 3.469709e-01	ci right 3.602717e-01	k: 7072	n:20000
Cons ci ratio: 2.796427e-02	ci left: 4.885968e-01	ci right 5.025045e-01	k: 9911	n:20000
KS ci ratio: 8.109712e-02	ci left: 1.003422e-01	ci right 1.088731e-01	k: 2091	n:20000
NXF3   20000 perm   3 sec   (6323 perm/sec)   p_kst 1.045500e-01   p_cons 4.955500e-01   p_joint 3.536000e-01

Outputting figure to mutsig2_images.part000000000118/NXF3.2_1672_20000_0.10455_0.49555_0.3536.png
                gene_name: NXF3
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000118
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 118 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1729>
Subject: Job 8004326: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1729>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000119> was used as the working directory.
Started at Sun Nov 11 15:10:13 2012
Results reported at Sun Nov 11 15:21:03 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000119.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000119.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 119  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000119.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    655.23 sec.
    Max Memory :      4790 MB
    Max Swap   :      7138 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
119
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 119
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 119: processing genes 10676 - 10766
Calculating significance of each gene.
Using projection method.
10676	NYNRIN	9.458006e-01
10677	OAF	1
10678	OAS1	3.523547e-01
10679	OAS2	9.472856e-01
10680	OAS3	9.110148e-01
10681	OASL	8.201551e-01
10682	OAT	6.626840e-01
10683	OAZ1	1
10684	OAZ2	1
10685	OAZ3	1
10686	OBFC1	8.844105e-02
10687	OBFC2A	1
10688	OBFC2B	1
10689	OBP2A	2.930862e-02
10690	OBP2B	1
10691	OBSCN	1
10692	OBSL1	9.822645e-01
10693	OC90	6.528793e-01
10694	OCA2	2.416796e-01
10695	OCEL1	1
10696	OCIAD1	1
10697	OCIAD2	1.464673e-01
10698	OCLM	1
10699	OCLN	1
10700	OCM	2.503084e-01
10701	OCM2	2.929836e-01
10702	OCRL	8.542992e-01
10703	ODAM	4.558986e-01
10704	ODC1	7.157124e-01
10705	ODF1	4.188480e-01
10706	ODF2	9.157657e-01
10707	ODF2L	1
10708	ODF3	1
10709	ODF3B	3.212932e-01
10710	ODF3L1	1
10711	ODF3L2	1
10712	ODF4	6.727725e-01
10713	ODZ1	1
10714	ODZ2	8.706047e-01
10715	ODZ3	1
10716	ODZ4	7.055962e-02
10717	OFD1	6.518275e-01
10718	OGDH	1
10719	OGDHL	9.641346e-01
10720	OGFOD1	5.359932e-01
10721	OGFOD2	1
10722	OGFR	2.176765e-01
10723	OGFRL1	1
10724	OGG1	1
10725	OGN	1
10726	OGT	9.101030e-01
10727	OIP5	3.609706e-01
10728	OIT3	1.319174e-01
10729	OLA1	1
10730	OLAH	3.660885e-01
10731	OLFM1	8.392847e-01
10732	OLFM2	1
10733	OLFM3	6.116190e-03
10734	OLFM4	1.979482e-01
10735	OLFML1	6.346635e-01
10736	OLFML2A	3.698693e-01
10737	OLFML2B	9.321910e-01
10738	OLFML3	7.833033e-01
10739	OLIG2	1
10740	OLIG3	1
10741	OLR1	1
10742	OMA1	7.774803e-01
10743	OMD	1
10744	OMG	1
10745	OMP	3.860935e-01
10746	ONECUT1	4.634312e-02
10747	ONECUT2	5.307374e-01
10748	OOEP	1.494148e-01
10749	OPA1	4.484658e-01
10750	OPA3	7.246351e-01
10751	OPALIN	1.481501e-01
10752	OPCML	1.708155e-01
10753	OPHN1	1
10754	OPLAH	7.010071e-01
10755	OPN1LW	4.211947e-01
10756	OPN1MW	1
10757	OPN1MW2	1
10758	OPN1SW	1
10759	OPN3	1
10760	OPN4	5.458263e-01
10761	OPN5	7.170973e-01
10762	OPRD1	3.294645e-01
10763	OPRK1	1
10764	OPRL1	3.776236e-01
10765	OPRM1	1.674989e-02
10766	OPTC	3.936541e-01
Done

Running MutSig 2:
Scatter job 119: processing genes 10676 - 10766
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
OBSCN
Processing conservation and coverage...
39% 78% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.360009e-01	ci left: 7.146123e-02	ci right 8.198693e-02	k: 766	n:10000
Cons ci ratio: 3.627716e-02	ci left: 5.287694e-01	ci right 5.484081e-01	k: 5386	n:10000
KS ci ratio: 2.166412e-01	ci left: 2.825837e-02	ci right 3.521793e-02	k: 316	n:10000
OBSCN   10000 perm   5 sec   (2118 perm/sec)   p_kst 3.160000e-02   p_cons 5.386000e-01   p_joint 7.660000e-02

Joint ci ratio: 1.007989e-01	ci left: 6.674574e-02	ci right 7.387980e-02	k: 1405	n:20000
Cons ci ratio: 2.559168e-02	ci left: 5.328621e-01	ci right 5.467263e-01	k: 10796	n:20000
KS ci ratio: 1.609604e-01	ci left: 2.647782e-02	ci right 3.116050e-02	k: 575	n:20000
OBSCN   20000 perm   12 sec   (1661 perm/sec)   p_kst 2.875000e-02   p_cons 5.398000e-01   p_joint 7.025000e-02

Joint ci ratio: 8.174109e-02	ci left: 6.828229e-02	ci right 7.413441e-02	k: 2135	n:30000
Cons ci ratio: 2.103516e-02	ci left: 5.308372e-01	ci right 5.421557e-01	k: 16095	n:30000
KS ci ratio: 1.332622e-01	ci left: 2.616234e-02	ci right 2.992980e-02	k: 840	n:30000
OBSCN   30000 perm   17 sec   (1745 perm/sec)   p_kst 2.800000e-02   p_cons 5.365000e-01   p_joint 7.116667e-02

Joint ci ratio: 7.313998e-02	ci left: 6.454425e-02	ci right 6.946883e-02	k: 2679	n:40000
Cons ci ratio: 1.944602e-02	ci left: 4.990126e-01	ci right 5.088368e-01	k: 20157	n:40000
KS ci ratio: 1.138684e-01	ci left: 2.713420e-02	ci right 3.043468e-02	k: 1150	n:40000
OBSCN   40000 perm   23 sec   (1768 perm/sec)   p_kst 2.875000e-02   p_cons 5.039250e-01   p_joint 6.697500e-02

Joint ci ratio: 6.430429e-02	ci left: 6.695109e-02	ci right 7.141908e-02	k: 3458	n:50000
Cons ci ratio: 1.736624e-02	ci left: 5.003074e-01	ci right 5.090920e-01	k: 25235	n:50000
KS ci ratio: 1.031368e-01	ci left: 2.662992e-02	ci right 2.954521e-02	k: 1403	n:50000
OBSCN   50000 perm   28 sec   (1795 perm/sec)   p_kst 2.806000e-02   p_cons 5.047000e-01   p_joint 6.916000e-02

Joint ci ratio: 6.147465e-02	ci left: 6.151228e-02	ci right 6.543007e-02	k: 3807	n:60000
Cons ci ratio: 1.586273e-02	ci left: 5.003909e-01	ci right 5.084086e-01	k: 30264	n:60000
KS ci ratio: 9.411626e-02	ci left: 2.677593e-02	ci right 2.943665e-02	k: 1685	n:60000
OBSCN   60000 perm   33 sec   (1804 perm/sec)   p_kst 2.808333e-02   p_cons 5.044000e-01   p_joint 6.345000e-02

Outputting figure to mutsig2_images.part000000000119/OBSCN.21_25533_60000_0.028083_0.5044_0.06345.png
                gene_name: OBSCN
               theta_stop: 0.094 
                    nperm: 60000 
                     p_ks: 0.028 
        ci_ks_bounds_left: 0.027 
       ci_ks_bounds_right: 0.029 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.063 
     ci_joint_bounds_left: 0.062 
    ci_joint_bounds_right: 0.065 

Current progress: 2 percent done.
ODZ1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.936928e-02	ci left: 2.944970e-01	ci right 3.126176e-01	k: 3035	n:10000
Cons ci ratio: 1.342088e-01	ci left: 7.330186e-02	ci right 8.394515e-02	k: 785	n:10000
KS ci ratio: 2.505766e-02	ci left: 7.008953e-01	ci right 7.187823e-01	k: 7099	n:10000
ODZ1   10000 perm   3 sec   (3752 perm/sec)   p_kst 7.099000e-01   p_cons 7.850000e-02   p_joint 3.035000e-01

Joint ci ratio: 4.684764e-02	ci left: 2.531870e-01	ci right 2.653831e-01	k: 5185	n:20000
Cons ci ratio: 9.390070e-02	ci left: 7.637423e-02	ci right 8.394836e-02	k: 1602	n:20000
KS ci ratio: 1.771671e-02	ci left: 7.036058e-01	ci right 7.162331e-01	k: 14199	n:20000
ODZ1   20000 perm   6 sec   (3437 perm/sec)   p_kst 7.099500e-01   p_cons 8.010000e-02   p_joint 2.592500e-01

Outputting figure to mutsig2_images.part000000000119/ODZ1.21_8327_20000_0.70995_0.0801_0.25925.png
                gene_name: ODZ1
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.080 
      ci_cons_bounds_left: 0.076 
     ci_cons_bounds_right: 0.084 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 4 percent done.
ODZ3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.252316e-02	ci left: 7.432110e-01	ci right 7.602421e-01	k: 7518	n:10000
Cons ci ratio: 1.679085e-02	ci left: 8.377565e-01	ci right 8.520420e-01	k: 8450	n:10000
KS ci ratio: 3.495467e-02	ci left: 5.471986e-01	ci right 5.667681e-01	k: 5570	n:10000
ODZ3   10000 perm   2 sec   (4339 perm/sec)   p_kst 5.570000e-01   p_cons 8.450000e-01   p_joint 7.518000e-01

Outputting figure to mutsig2_images.part000000000119/ODZ3.17_8208_10000_0.557_0.845_0.7518.png
                gene_name: ODZ3
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 7 percent done.
ODZ4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.225082e-01	ci left: 2.674401e-02	ci right 3.353336e-02	k: 300	n:10000
Cons ci ratio: 3.369728e-02	ci left: 5.652404e-01	ci right 5.847159e-01	k: 5750	n:10000
KS ci ratio: 4.002490e-01	ci left: 7.602648e-03	ci right 1.149110e-02	k: 94	n:10000
ODZ4   10000 perm   2 sec   (4124 perm/sec)   p_kst 9.400000e-03   p_cons 5.750000e-01   p_joint 3.000000e-02

Joint ci ratio: 1.569380e-01	ci left: 2.787170e-02	ci right 3.266616e-02	k: 604	n:20000
Cons ci ratio: 2.388999e-02	ci left: 5.668610e-01	ci right 5.806176e-01	k: 11475	n:20000
KS ci ratio: 2.793383e-01	ci left: 8.388326e-03	ci right 1.115700e-02	k: 194	n:20000
ODZ4   20000 perm   5 sec   (3740 perm/sec)   p_kst 9.700000e-03   p_cons 5.737500e-01   p_joint 3.020000e-02

Joint ci ratio: 1.427074e-01	ci left: 2.278012e-02	ci right 2.631278e-02	k: 735	n:30000
Cons ci ratio: 1.957369e-02	ci left: 5.664444e-01	ci right 5.776750e-01	k: 17162	n:30000
KS ci ratio: 2.271026e-01	ci left: 8.716294e-03	ci right 1.098015e-02	k: 294	n:30000
ODZ4   30000 perm   8 sec   (3585 perm/sec)   p_kst 9.800000e-03   p_cons 5.720667e-01   p_joint 2.450000e-02

Joint ci ratio: 1.234813e-01	ci left: 2.305558e-02	ci right 2.611397e-02	k: 982	n:40000
Cons ci ratio: 1.695899e-02	ci left: 5.669834e-01	ci right 5.767062e-01	k: 22874	n:40000
KS ci ratio: 1.970149e-01	ci left: 8.834070e-03	ci right 1.078808e-02	k: 391	n:40000
ODZ4   40000 perm   11 sec   (3506 perm/sec)   p_kst 9.775000e-03   p_cons 5.718500e-01   p_joint 2.455000e-02

Joint ci ratio: 9.847161e-02	ci left: 2.920526e-02	ci right 3.224954e-02	k: 1535	n:50000
Cons ci ratio: 1.516279e-02	ci left: 5.676890e-01	ci right 5.763826e-01	k: 28602	n:50000
KS ci ratio: 1.776867e-01	ci left: 8.783002e-03	ci right 1.051464e-02	k: 481	n:50000
ODZ4   50000 perm   15 sec   (3431 perm/sec)   p_kst 9.620000e-03   p_cons 5.720400e-01   p_joint 3.070000e-02

Joint ci ratio: 1.133797e-01	ci left: 1.842475e-02	ci right 2.065540e-02	k: 1171	n:60000
Cons ci ratio: 1.422452e-02	ci left: 5.546491e-01	ci right 5.626119e-01	k: 33518	n:60000
KS ci ratio: 1.616979e-01	ci left: 8.915228e-03	ci right 1.049941e-02	k: 581	n:60000
ODZ4   60000 perm   18 sec   (3374 perm/sec)   p_kst 9.683333e-03   p_cons 5.586333e-01   p_joint 1.951667e-02

Joint ci ratio: 1.011968e-01	ci left: 1.992270e-02	ci right 2.206012e-02	k: 1468	n:70000
Cons ci ratio: 1.316608e-02	ci left: 5.550693e-01	ci right 5.624401e-01	k: 39113	n:70000
KS ci ratio: 1.474184e-01	ci left: 9.262376e-03	ci right 1.075009e-02	k: 699	n:70000
ODZ4   70000 perm   21 sec   (3325 perm/sec)   p_kst 9.985714e-03   p_cons 5.587571e-01   p_joint 2.097143e-02

Joint ci ratio: 9.631048e-02	ci left: 1.930953e-02	ci right 2.127547e-02	k: 1622	n:80000
Cons ci ratio: 1.232844e-02	ci left: 5.548005e-01	ci right 5.616953e-01	k: 44660	n:80000
KS ci ratio: 1.383347e-01	ci left: 9.249653e-03	ci right 1.063623e-02	k: 794	n:80000
ODZ4   80000 perm   24 sec   (3274 perm/sec)   p_kst 9.925000e-03   p_cons 5.582500e-01   p_joint 2.027500e-02

Joint ci ratio: 9.297975e-02	ci left: 1.846543e-02	ci right 2.027685e-02	k: 1742	n:90000
Cons ci ratio: 1.163399e-02	ci left: 5.545479e-01	ci right 5.610484e-01	k: 50202	n:90000
KS ci ratio: 1.297201e-01	ci left: 9.392489e-03	ci right 1.070605e-02	k: 903	n:90000
ODZ4   90000 perm   28 sec   (3242 perm/sec)   p_kst 1.003333e-02   p_cons 5.578000e-01   p_joint 1.935556e-02

Joint ci ratio: 8.715119e-02	ci left: 1.896507e-02	ci right 2.070294e-02	k: 1982	n:100000
Cons ci ratio: 1.101866e-02	ci left: 5.555357e-01	ci right 5.617009e-01	k: 55862	n:100000
KS ci ratio: 1.237777e-01	ci left: 9.315005e-03	ci right 1.055367e-02	k: 992	n:100000
ODZ4   100000 perm   31 sec   (3211 perm/sec)   p_kst 9.920000e-03   p_cons 5.586200e-01   p_joint 1.982000e-02

Joint ci ratio: 8.064578e-02	ci left: 2.017859e-02	ci right 2.188315e-02	k: 2312	n:110000
Cons ci ratio: 1.051058e-02	ci left: 5.554594e-01	ci right 5.613375e-01	k: 61424	n:110000
KS ci ratio: 1.175995e-01	ci left: 9.411586e-03	ci right 1.059628e-02	k: 1099	n:110000
ODZ4   110000 perm   35 sec   (3174 perm/sec)   p_kst 9.990909e-03   p_cons 5.584000e-01   p_joint 2.101818e-02

Joint ci ratio: 8.214158e-02	ci left: 1.785938e-02	ci right 1.939734e-02	k: 2234	n:120000
Cons ci ratio: 1.006295e-02	ci left: 5.555932e-01	ci right 5.612207e-01	k: 67009	n:120000
KS ci ratio: 1.135527e-01	ci left: 9.274645e-03	ci right 1.039923e-02	k: 1179	n:120000
ODZ4   120000 perm   38 sec   (3141 perm/sec)   p_kst 9.825000e-03   p_cons 5.584083e-01   p_joint 1.861667e-02

Joint ci ratio: 7.892325e-02	ci left: 1.788755e-02	ci right 1.936480e-02	k: 2420	n:130000
Cons ci ratio: 9.667286e-03	ci left: 5.557494e-01	ci right 5.611557e-01	k: 72599	n:130000
KS ci ratio: 1.140358e-01	ci left: 8.493754e-03	ci right 9.528325e-03	k: 1170	n:130000
ODZ4   130000 perm   42 sec   (3109 perm/sec)   p_kst 9.000000e-03   p_cons 5.584538e-01   p_joint 1.861538e-02

Joint ci ratio: 7.872892e-02	ci left: 1.671450e-02	ci right 1.809131e-02	k: 2435	n:140000
Cons ci ratio: 9.317194e-03	ci left: 5.557655e-01	ci right 5.609750e-01	k: 78172	n:140000
KS ci ratio: 1.100232e-01	ci left: 8.491074e-03	ci right 9.486565e-03	k: 1257	n:140000
ODZ4   140000 perm   46 sec   (3075 perm/sec)   p_kst 8.978571e-03   p_cons 5.583714e-01   p_joint 1.739286e-02

Joint ci ratio: 7.653829e-02	ci left: 1.652843e-02	ci right 1.785033e-02	k: 2577	n:150000
Cons ci ratio: 9.000626e-03	ci left: 5.558892e-01	ci right 5.609218e-01	k: 83761	n:150000
KS ci ratio: 1.069290e-01	ci left: 8.404931e-03	ci right 9.360865e-03	k: 1331	n:150000
ODZ4   150000 perm   49 sec   (3041 perm/sec)   p_kst 8.873333e-03   p_cons 5.584067e-01   p_joint 1.718000e-02

Joint ci ratio: 7.420221e-02	ci left: 1.650721e-02	ci right 1.778538e-02	k: 2742	n:160000
Cons ci ratio: 8.707655e-03	ci left: 5.563754e-01	ci right 5.612475e-01	k: 89410	n:160000
KS ci ratio: 1.032335e-01	ci left: 8.469955e-03	ci right 9.397970e-03	k: 1428	n:160000
ODZ4   160000 perm   53 sec   (3008 perm/sec)   p_kst 8.925000e-03   p_cons 5.588125e-01   p_joint 1.713750e-02

Joint ci ratio: 6.896012e-02	ci left: 1.800929e-02	ci right 1.930132e-02	k: 3170	n:170000
Cons ci ratio: 8.454033e-03	ci left: 5.560767e-01	ci right 5.608036e-01	k: 94935	n:170000
KS ci ratio: 9.976448e-02	ci left: 8.550778e-03	ci right 9.454322e-03	k: 1529	n:170000
ODZ4   170000 perm   57 sec   (2976 perm/sec)   p_kst 8.994118e-03   p_cons 5.584412e-01   p_joint 1.864706e-02

Outputting figure to mutsig2_images.part000000000119/ODZ4.14_8430_170000_0.0089941_0.55844_0.018647.png
                gene_name: ODZ4
               theta_stop: 0.100 
                    nperm: 170000 
                     p_ks: 0.0090 
        ci_ks_bounds_left: 0.0086 
       ci_ks_bounds_right: 0.0095 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.019 
     ci_joint_bounds_left: 0.018 
    ci_joint_bounds_right: 0.019 

Current progress: 9 percent done.
OCA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.025482e-01	ci left: 3.243447e-02	ci right 3.983893e-02	k: 360	n:10000
Cons ci ratio: 1.181211e-01	ci left: 9.331107e-02	ci right 1.051236e-01	k: 991	n:10000
KS ci ratio: 3.220289e-01	ci left: 1.224928e-02	ci right 1.703957e-02	k: 145	n:10000
OCA2   10000 perm   2 sec   (5474 perm/sec)   p_kst 1.450000e-02   p_cons 9.910000e-02   p_joint 3.600000e-02

Joint ci ratio: 2.160014e-01	ci left: 1.444865e-02	ci right 1.799402e-02	k: 323	n:20000
Cons ci ratio: 8.437829e-02	ci left: 9.327545e-02	ci right 1.015420e-01	k: 1947	n:20000
KS ci ratio: 2.343168e-01	ci left: 1.218208e-02	ci right 1.546151e-02	k: 275	n:20000
OCA2   20000 perm   4 sec   (5008 perm/sec)   p_kst 1.375000e-02   p_cons 9.735000e-02   p_joint 1.615000e-02

Joint ci ratio: 1.574875e-01	ci left: 1.863797e-02	ci right 2.185589e-02	k: 606	n:30000
Cons ci ratio: 6.850609e-02	ci left: 9.501903e-02	ci right 1.017923e-01	k: 2951	n:30000
KS ci ratio: 1.915552e-01	ci left: 1.244696e-02	ci right 1.511510e-02	k: 412	n:30000
OCA2   30000 perm   6 sec   (4780 perm/sec)   p_kst 1.373333e-02   p_cons 9.836667e-02   p_joint 2.020000e-02

Joint ci ratio: 1.196082e-01	ci left: 2.458383e-02	ci right 2.773547e-02	k: 1045	n:40000
Cons ci ratio: 5.875048e-02	ci left: 9.720002e-02	ci right 1.031082e-01	k: 4005	n:40000
KS ci ratio: 1.646337e-01	ci left: 1.282353e-02	ci right 1.514781e-02	k: 558	n:40000
OCA2   40000 perm   9 sec   (4666 perm/sec)   p_kst 1.395000e-02   p_cons 1.001250e-01   p_joint 2.612500e-02

Joint ci ratio: 1.491868e-01	ci left: 1.260310e-02	ci right 1.465395e-02	k: 680	n:50000
Cons ci ratio: 5.267975e-02	ci left: 9.706747e-02	ci right 1.023391e-01	k: 4984	n:50000
KS ci ratio: 1.466954e-01	ci left: 1.304628e-02	ci right 1.513069e-02	k: 703	n:50000
OCA2   50000 perm   11 sec   (4573 perm/sec)   p_kst 1.406000e-02   p_cons 9.968000e-02   p_joint 1.360000e-02

Joint ci ratio: 1.219347e-01	ci left: 1.589988e-02	ci right 1.798056e-02	k: 1015	n:60000
Cons ci ratio: 4.791215e-02	ci left: 9.795685e-02	ci right 1.027819e-01	k: 6021	n:60000
KS ci ratio: 1.344641e-01	ci left: 1.302679e-02	ci right 1.492065e-02	k: 837	n:60000
OCA2   60000 perm   13 sec   (4492 perm/sec)   p_kst 1.395000e-02   p_cons 1.003500e-01   p_joint 1.691667e-02

Joint ci ratio: 1.301899e-01	ci left: 1.195271e-02	ci right 1.363089e-02	k: 894	n:70000
Cons ci ratio: 4.432885e-02	ci left: 9.825384e-02	ci right 1.027222e-01	k: 7033	n:70000
KS ci ratio: 1.244037e-01	ci left: 1.311499e-02	ci right 1.486850e-02	k: 978	n:70000
OCA2   70000 perm   16 sec   (4411 perm/sec)   p_kst 1.397143e-02   p_cons 1.004714e-01   p_joint 1.277143e-02

Joint ci ratio: 1.223192e-01	ci left: 1.189915e-02	ci right 1.346149e-02	k: 1013	n:80000
Cons ci ratio: 4.147694e-02	ci left: 9.835049e-02	ci right 1.025285e-01	k: 8034	n:80000
KS ci ratio: 1.155784e-01	ci left: 1.335511e-02	ci right 1.500540e-02	k: 1133	n:80000
OCA2   80000 perm   18 sec   (4333 perm/sec)   p_kst 1.416250e-02   p_cons 1.004250e-01   p_joint 1.266250e-02

Joint ci ratio: 1.040990e-01	ci left: 1.470304e-02	ci right 1.632841e-02	k: 1395	n:90000
Cons ci ratio: 3.915634e-02	ci left: 9.823463e-02	ci right 1.021690e-01	k: 9017	n:90000
KS ci ratio: 1.086128e-01	ci left: 1.349122e-02	ci right 1.505143e-02	k: 1283	n:90000
OCA2   90000 perm   21 sec   (4262 perm/sec)   p_kst 1.425556e-02   p_cons 1.001889e-01   p_joint 1.550000e-02

Joint ci ratio: 1.009652e-01	ci left: 1.409969e-02	ci right 1.560864e-02	k: 1484	n:100000
Cons ci ratio: 3.710789e-02	ci left: 9.852409e-02	ci right 1.022591e-01	k: 10038	n:100000
KS ci ratio: 1.027352e-01	ci left: 1.361225e-02	ci right 1.509612e-02	k: 1434	n:100000
OCA2   100000 perm   24 sec   (4178 perm/sec)   p_kst 1.434000e-02   p_cons 1.003800e-01   p_joint 1.484000e-02

Joint ci ratio: 8.705268e-02	ci left: 1.731147e-02	ci right 1.889590e-02	k: 1990	n:110000
Cons ci ratio: 3.536658e-02	ci left: 9.868412e-02	ci right 1.022461e-01	k: 11050	n:110000
KS ci ratio: 9.746985e-02	ci left: 1.378411e-02	ci right 1.520529e-02	k: 1593	n:110000
OCA2   110000 perm   27 sec   (4113 perm/sec)   p_kst 1.448182e-02   p_cons 1.004545e-01   p_joint 1.809091e-02

Outputting figure to mutsig2_images.part000000000119/OCA2.12_2609_110000_0.014482_0.10045_0.018091.png
                gene_name: OCA2
               theta_stop: 0.097 
                    nperm: 110000 
                     p_ks: 0.014 
        ci_ks_bounds_left: 0.014 
       ci_ks_bounds_right: 0.015 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.099 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.018 
     ci_joint_bounds_left: 0.017 
    ci_joint_bounds_right: 0.019 

Current progress: 11 percent done.
ODZ2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.242641e-01	ci left: 8.484960e-02	ci right 9.619025e-02	k: 904	n:10000
Cons ci ratio: 2.580770e-02	ci left: 6.884913e-01	ci right 7.065935e-01	k: 6976	n:10000
KS ci ratio: 2.288572e-01	ci left: 2.523219e-02	ci right 3.184628e-02	k: 284	n:10000
ODZ2   10000 perm   2 sec   (4162 perm/sec)   p_kst 2.840000e-02   p_cons 6.976000e-01   p_joint 9.040000e-02

Joint ci ratio: 1.175757e-01	ci left: 4.954642e-02	ci right 5.578445e-02	k: 1052	n:20000
Cons ci ratio: 1.832287e-02	ci left: 6.894714e-01	ci right 7.022717e-01	k: 13918	n:20000
KS ci ratio: 1.602456e-01	ci left: 2.671804e-02	ci right 3.142021e-02	k: 580	n:20000
ODZ2   20000 perm   5 sec   (3909 perm/sec)   p_kst 2.900000e-02   p_cons 6.959000e-01   p_joint 5.260000e-02

Joint ci ratio: 9.528656e-02	ci left: 5.084996e-02	ci right 5.597030e-02	k: 1601	n:30000
Cons ci ratio: 1.515538e-02	ci left: 6.851334e-01	ci right 6.956297e-01	k: 20712	n:30000
KS ci ratio: 1.345013e-01	ci left: 2.567866e-02	ci right 2.941359e-02	k: 825	n:30000
ODZ2   30000 perm   8 sec   (3792 perm/sec)   p_kst 2.750000e-02   p_cons 6.904000e-01   p_joint 5.336667e-02

Joint ci ratio: 7.924243e-02	ci left: 5.536100e-02	ci right 5.995348e-02	k: 2305	n:40000
Cons ci ratio: 1.317876e-02	ci left: 6.840862e-01	ci right 6.931864e-01	k: 27546	n:40000
KS ci ratio: 1.153207e-01	ci left: 2.645373e-02	ci right 2.971527e-02	k: 1122	n:40000
ODZ2   40000 perm   11 sec   (3713 perm/sec)   p_kst 2.805000e-02   p_cons 6.886500e-01   p_joint 5.762500e-02

Joint ci ratio: 7.867643e-02	ci left: 4.543602e-02	ci right 4.917676e-02	k: 2364	n:50000
Cons ci ratio: 1.176522e-02	ci left: 6.853833e-01	ci right 6.935147e-01	k: 34473	n:50000
KS ci ratio: 1.039007e-01	ci left: 2.624000e-02	ci right 2.913518e-02	k: 1383	n:50000
ODZ2   50000 perm   14 sec   (3651 perm/sec)   p_kst 2.766000e-02   p_cons 6.894600e-01   p_joint 4.728000e-02

Joint ci ratio: 7.644608e-02	ci left: 4.037611e-02	ci right 4.360171e-02	k: 2518	n:60000
Cons ci ratio: 1.072410e-02	ci left: 6.863822e-01	ci right 6.937994e-01	k: 41406	n:60000
KS ci ratio: 9.457901e-02	ci left: 2.651538e-02	ci right 2.916389e-02	k: 1669	n:60000
ODZ2   60000 perm   17 sec   (3604 perm/sec)   p_kst 2.781667e-02   p_cons 6.901000e-01   p_joint 4.196667e-02

Outputting figure to mutsig2_images.part000000000119/ODZ2.9_8414_60000_0.027817_0.6901_0.041967.png
                gene_name: ODZ2
               theta_stop: 0.095 
                    nperm: 60000 
                     p_ks: 0.028 
        ci_ks_bounds_left: 0.027 
       ci_ks_bounds_right: 0.029 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.042 
     ci_joint_bounds_left: 0.040 
    ci_joint_bounds_right: 0.044 

Current progress: 13 percent done.
OC90
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.840551e-02	ci left: 1.569877e-01	ci right 1.716084e-01	k: 1642	n:10000
Cons ci ratio: 3.103201e-02	ci left: 6.050792e-01	ci right 6.242539e-01	k: 6147	n:10000
KS ci ratio: 1.248719e-01	ci left: 8.407230e-02	ci right 9.536803e-02	k: 896	n:10000
OC90   10000 perm   2 sec   (5850 perm/sec)   p_kst 8.960000e-02   p_cons 6.147000e-01   p_joint 1.642000e-01

Joint ci ratio: 6.849977e-02	ci left: 1.358592e-01	ci right 1.455455e-01	k: 2813	n:20000
Cons ci ratio: 2.191396e-02	ci left: 6.085660e-01	ci right 6.221004e-01	k: 12307	n:20000
KS ci ratio: 8.835364e-02	ci left: 8.562761e-02	ci right 9.359217e-02	k: 1791	n:20000
OC90   20000 perm   4 sec   (5380 perm/sec)   p_kst 8.955000e-02   p_cons 6.153500e-01   p_joint 1.406500e-01

Outputting figure to mutsig2_images.part000000000119/OC90.8_1486_20000_0.08955_0.61535_0.14065.png
                gene_name: OC90
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.090 
        ci_ks_bounds_left: 0.086 
       ci_ks_bounds_right: 0.094 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 15 percent done.
OCRL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.478671e-02	ci left: 3.292236e-01	ci right 3.478705e-01	k: 3385	n:10000
Cons ci ratio: 9.487959e-02	ci left: 1.388391e-01	ci right 1.527680e-01	k: 1457	n:10000
KS ci ratio: 3.430777e-02	ci left: 5.564183e-01	ci right 5.759431e-01	k: 5662	n:10000
OCRL   10000 perm   2 sec   (5262 perm/sec)   p_kst 5.662000e-01   p_cons 1.457000e-01   p_joint 3.385000e-01

Outputting figure to mutsig2_images.part000000000119/OCRL.8_2802_10000_0.5662_0.1457_0.3385.png
                gene_name: OCRL
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 17 percent done.
OLFM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.745679e-01	ci left: 4.379660e-02	ci right 5.226918e-02	k: 479	n:10000
Cons ci ratio: 3.054647e-01	ci left: 1.372489e-02	ci right 1.876262e-02	k: 161	n:10000
KS ci ratio: 4.801080e-02	ci left: 3.902789e-01	ci right 4.095794e-01	k: 3999	n:10000
OLFM3   10000 perm   2 sec   (4233 perm/sec)   p_kst 3.999000e-01   p_cons 1.610000e-02   p_joint 4.790000e-02

Joint ci ratio: 1.798538e-01	ci left: 2.111042e-02	ci right 2.532976e-02	k: 463	n:20000
Cons ci ratio: 2.553012e-01	ci left: 1.016235e-02	ci right 1.318213e-02	k: 232	n:20000
KS ci ratio: 3.404059e-02	ci left: 3.918545e-01	ci right 4.054750e-01	k: 7973	n:20000
OLFM3   20000 perm   5 sec   (4419 perm/sec)   p_kst 3.986500e-01   p_cons 1.160000e-02   p_joint 2.315000e-02

Joint ci ratio: 1.238762e-01	ci left: 3.029580e-02	ci right 3.432877e-02	k: 968	n:30000
Cons ci ratio: 2.050674e-01	ci left: 1.079864e-02	ci right 1.329720e-02	k: 360	n:30000
KS ci ratio: 2.822564e-02	ci left: 3.857715e-01	ci right 3.968496e-01	k: 11739	n:30000
OLFM3   30000 perm   7 sec   (4549 perm/sec)   p_kst 3.913000e-01   p_cons 1.200000e-02   p_joint 3.226667e-02

Joint ci ratio: 9.240792e-02	ci left: 4.105722e-02	ci right 4.505946e-02	k: 1721	n:40000
Cons ci ratio: 1.712816e-01	ci left: 1.181713e-02	ci right 1.405441e-02	k: 516	n:40000
KS ci ratio: 2.444709e-02	ci left: 3.864629e-01	ci right 3.960529e-01	k: 15650	n:40000
OLFM3   40000 perm   9 sec   (4574 perm/sec)   p_kst 3.912500e-01   p_cons 1.290000e-02   p_joint 4.302500e-02

Joint ci ratio: 8.077810e-02	ci left: 4.316016e-02	ci right 4.681290e-02	k: 2248	n:50000
Cons ci ratio: 1.544449e-01	ci left: 1.173687e-02	ci right 1.372030e-02	k: 635	n:50000
KS ci ratio: 2.195797e-02	ci left: 3.849828e-01	ci right 3.935501e-01	k: 19463	n:50000
OLFM3   50000 perm   11 sec   (4571 perm/sec)   p_kst 3.892600e-01   p_cons 1.270000e-02   p_joint 4.496000e-02

Joint ci ratio: 7.619384e-02	ci left: 4.063790e-02	ci right 4.387323e-02	k: 2534	n:60000
Cons ci ratio: 1.410072e-01	ci left: 1.181932e-02	ci right 1.362827e-02	k: 762	n:60000
KS ci ratio: 2.010661e-02	ci left: 3.838984e-01	ci right 3.917124e-01	k: 23268	n:60000
OLFM3   60000 perm   13 sec   (4536 perm/sec)   p_kst 3.878000e-01   p_cons 1.270000e-02   p_joint 4.223333e-02

Joint ci ratio: 6.359352e-02	ci left: 4.984606e-02	ci right 5.313410e-02	k: 3603	n:70000
Cons ci ratio: 1.295318e-01	ci left: 1.207716e-02	ci right 1.376358e-02	k: 903	n:70000
KS ci ratio: 1.860008e-02	ci left: 3.845731e-01	ci right 3.918076e-01	k: 27173	n:70000
OLFM3   70000 perm   16 sec   (4498 perm/sec)   p_kst 3.881857e-01   p_cons 1.290000e-02   p_joint 5.147143e-02

Joint ci ratio: 6.355086e-02	ci left: 4.395536e-02	ci right 4.685272e-02	k: 3631	n:80000
Cons ci ratio: 1.200030e-01	ci left: 1.237205e-02	ci right 1.396354e-02	k: 1052	n:80000
KS ci ratio: 1.740702e-02	ci left: 3.845837e-01	ci right 3.913494e-01	k: 31037	n:80000
OLFM3   80000 perm   18 sec   (4441 perm/sec)   p_kst 3.879625e-01   p_cons 1.315000e-02   p_joint 4.538750e-02

Joint ci ratio: 5.739366e-02	ci left: 4.786171e-02	ci right 5.070076e-02	k: 4434	n:90000
Cons ci ratio: 1.124982e-01	ci left: 1.256174e-02	ci right 1.406987e-02	k: 1197	n:90000
KS ci ratio: 1.640986e-02	ci left: 3.848256e-01	ci right 3.912039e-01	k: 34921	n:90000
OLFM3   90000 perm   21 sec   (4388 perm/sec)   p_kst 3.880111e-01   p_cons 1.330000e-02   p_joint 4.926667e-02

Joint ci ratio: 5.692711e-02	ci left: 4.397981e-02	ci right 4.656665e-02	k: 4526	n:100000
Cons ci ratio: 1.070153e-01	ci left: 1.253098e-02	ci right 1.395746e-02	k: 1323	n:100000
KS ci ratio: 1.556587e-02	ci left: 3.850480e-01	ci right 3.910985e-01	k: 38807	n:100000
OLFM3   100000 perm   23 sec   (4327 perm/sec)   p_kst 3.880700e-01   p_cons 1.323000e-02   p_joint 4.526000e-02

Joint ci ratio: 5.511608e-02	ci left: 4.275062e-02	ci right 4.518259e-02	k: 4835	n:110000
Cons ci ratio: 1.014857e-01	ci left: 1.270224e-02	ci right 1.406905e-02	k: 1471	n:110000
KS ci ratio: 1.484937e-02	ci left: 3.849372e-01	ci right 3.907051e-01	k: 42660	n:110000
OLFM3   110000 perm   26 sec   (4272 perm/sec)   p_kst 3.878182e-01   p_cons 1.337273e-02   p_joint 4.395455e-02

Joint ci ratio: 5.047839e-02	ci left: 4.664086e-02	ci right 4.906438e-02	k: 5741	n:120000
Cons ci ratio: 9.734408e-02	ci left: 1.268386e-02	ci right 1.398981e-02	k: 1599	n:120000
KS ci ratio: 1.424124e-02	ci left: 3.842595e-01	ci right 3.897793e-01	k: 46442	n:120000
OLFM3   120000 perm   29 sec   (4191 perm/sec)   p_kst 3.870167e-01   p_cons 1.332500e-02   p_joint 4.784167e-02

Outputting figure to mutsig2_images.part000000000119/OLFM3.8_1401_120000_0.38702_0.013325_0.047842.png
                gene_name: OLFM3
               theta_stop: 0.097 
                    nperm: 120000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.013 
      ci_cons_bounds_left: 0.013 
     ci_cons_bounds_right: 0.014 
                  p_joint: 0.048 
     ci_joint_bounds_left: 0.047 
    ci_joint_bounds_right: 0.049 

Current progress: 20 percent done.
NYNRIN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.823758e-02	ci left: 3.026276e-01	ci right 3.208822e-01	k: 3117	n:10000
Cons ci ratio: 1.048147e-01	ci left: 1.162323e-01	ci right 1.291883e-01	k: 1226	n:10000
KS ci ratio: 1.052715e-02	ci left: 9.277156e-01	ci right 9.376305e-01	k: 9328	n:10000
NYNRIN   10000 perm   2 sec   (4672 perm/sec)   p_kst 9.328000e-01   p_cons 1.226000e-01   p_joint 3.117000e-01

Joint ci ratio: 4.631699e-02	ci left: 2.575532e-01	ci right 2.698155e-01	k: 5273	n:20000
Cons ci ratio: 7.199204e-02	ci left: 1.244328e-01	ci right 1.337753e-01	k: 2581	n:20000
KS ci ratio: 7.696691e-03	ci left: 9.247903e-01	ci right 9.319846e-01	k: 18569	n:20000
NYNRIN   20000 perm   5 sec   (4348 perm/sec)   p_kst 9.284500e-01   p_cons 1.290500e-01   p_joint 2.636500e-01

Outputting figure to mutsig2_images.part000000000119/NYNRIN.6_5729_20000_0.92845_0.12905_0.26365.png
                gene_name: NYNRIN
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 22 percent done.
OGDHL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.117623e-02	ci left: 7.657748e-01	ci right 7.822653e-01	k: 7741	n:10000
Cons ci ratio: 4.922212e-02	ci left: 3.784330e-01	ci right 3.976323e-01	k: 3880	n:10000
KS ci ratio: 1.586443e-02	ci left: 8.523304e-01	ci right 8.660597e-01	k: 8593	n:10000
OGDHL   10000 perm   2 sec   (5828 perm/sec)   p_kst 8.593000e-01   p_cons 3.880000e-01   p_joint 7.741000e-01

Outputting figure to mutsig2_images.part000000000119/OGDHL.6_3121_10000_0.8593_0.388_0.7741.png
                gene_name: OGDHL
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 24 percent done.
OPRM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.475109e-02	ci left: 2.594365e-01	ci right 2.768988e-01	k: 2681	n:10000
Cons ci ratio: 5.677757e-02	ci left: 3.135397e-01	ci right 3.319637e-01	k: 3227	n:10000
KS ci ratio: 8.811689e-02	ci left: 1.578715e-01	ci right 1.725241e-01	k: 1651	n:10000
OPRM1   10000 perm   2 sec   (5876 perm/sec)   p_kst 1.651000e-01   p_cons 3.227000e-01   p_joint 2.681000e-01

Outputting figure to mutsig2_images.part000000000119/OPRM1.6_2106_10000_0.1651_0.3227_0.2681.png
                gene_name: OPRM1
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 26 percent done.
ONECUT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.806611e-02	ci left: 5.047513e-01	ci right 5.244402e-01	k: 5146	n:10000
Cons ci ratio: 5.560388e-02	ci left: 3.226707e-01	ci right 3.412273e-01	k: 3319	n:10000
KS ci ratio: 4.357574e-02	ci left: 4.374215e-01	ci right 4.570092e-01	k: 4472	n:10000
ONECUT1   10000 perm   1 sec   (7295 perm/sec)   p_kst 4.472000e-01   p_cons 3.319000e-01   p_joint 5.146000e-01

Outputting figure to mutsig2_images.part000000000119/ONECUT1.5_1406_10000_0.4472_0.3319_0.5146.png
                gene_name: ONECUT1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 28 percent done.
OPA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.006293e-02	ci left: 2.299769e-01	ci right 2.467758e-01	k: 2383	n:10000
Cons ci ratio: 4.922212e-02	ci left: 3.784330e-01	ci right 3.976323e-01	k: 3880	n:10000
KS ci ratio: 1.283610e-01	ci left: 7.979957e-02	ci right 9.084340e-02	k: 852	n:10000
OPA1   10000 perm   2 sec   (5596 perm/sec)   p_kst 8.520000e-02   p_cons 3.880000e-01   p_joint 2.383000e-01

Joint ci ratio: 5.703647e-02	ci left: 1.855724e-01	ci right 1.965176e-01	k: 3820	n:20000
Cons ci ratio: 3.529362e-02	ci left: 3.747107e-01	ci right 3.882238e-01	k: 7629	n:20000
KS ci ratio: 9.111760e-02	ci left: 8.082777e-02	ci right 8.859346e-02	k: 1693	n:20000
OPA1   20000 perm   4 sec   (4977 perm/sec)   p_kst 8.465000e-02   p_cons 3.814500e-01   p_joint 1.910000e-01

Outputting figure to mutsig2_images.part000000000119/OPA1.5_3168_20000_0.08465_0.38145_0.191.png
                gene_name: OPA1
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.085 
        ci_ks_bounds_left: 0.081 
       ci_ks_bounds_right: 0.089 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 30 percent done.
OPCML
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.985807e-02	ci left: 4.817552e-01	ci right 5.014497e-01	k: 4916	n:10000
Cons ci ratio: 1.703364e-02	ci left: 8.338874e-01	ci right 8.483133e-01	k: 8412	n:10000
KS ci ratio: 7.767058e-02	ci left: 1.950552e-01	ci right 2.109182e-01	k: 2029	n:10000
OPCML   10000 perm   2 sec   (6215 perm/sec)   p_kst 2.029000e-01   p_cons 8.412000e-01   p_joint 4.916000e-01

Outputting figure to mutsig2_images.part000000000119/OPCML.5_1131_10000_0.2029_0.8412_0.4916.png
                gene_name: OPCML
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 33 percent done.
OPLAH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.206900e-02	ci left: 2.200047e-01	ci right 2.365539e-01	k: 2282	n:10000
Cons ci ratio: 6.010744e-02	ci left: 2.893427e-01	ci right 3.073749e-01	k: 2983	n:10000
KS ci ratio: 8.438058e-02	ci left: 1.699576e-01	ci right 1.850308e-01	k: 1774	n:10000
OPLAH   10000 perm   2 sec   (5648 perm/sec)   p_kst 1.774000e-01   p_cons 2.983000e-01   p_joint 2.282000e-01

Outputting figure to mutsig2_images.part000000000119/OPLAH.5_3973_10000_0.1774_0.2983_0.2282.png
                gene_name: OPLAH
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 35 percent done.
OBFC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.875620e-02	ci left: 6.406595e-01	ci right 6.594530e-01	k: 6501	n:10000
KS ci ratio: 1.049357e-02	ci left: 9.281291e-01	ci right 9.380168e-01	k: 9332	n:10000
OBFC1   10000 perm   1 sec   (6712 perm/sec)   p_kst 9.332000e-01   p_cons 6.501000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000119/OBFC1.4_1143_10000_0.9332_0.6501_1.png
                gene_name: OBFC1
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 37 percent done.
OFD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.038774e-02	ci left: 1.843208e-01	ci right 1.998590e-01	k: 1920	n:10000
Cons ci ratio: 5.684256e-02	ci left: 3.130436e-01	ci right 3.314601e-01	k: 3222	n:10000
KS ci ratio: 1.442098e-01	ci left: 6.381856e-02	ci right 7.383439e-02	k: 687	n:10000
OFD1   10000 perm   2 sec   (6135 perm/sec)   p_kst 6.870000e-02   p_cons 3.222000e-01   p_joint 1.920000e-01

Joint ci ratio: 9.866417e-02	ci left: 6.952973e-02	ci right 7.679495e-02	k: 1462	n:20000
Cons ci ratio: 4.147477e-02	ci left: 3.023009e-01	ci right 3.151548e-01	k: 6174	n:20000
KS ci ratio: 1.032282e-01	ci left: 6.376824e-02	ci right 7.075821e-02	k: 1344	n:20000
OFD1   20000 perm   4 sec   (5524 perm/sec)   p_kst 6.720000e-02   p_cons 3.087000e-01   p_joint 7.310000e-02

Joint ci ratio: 6.067606e-02	ci left: 1.184152e-01	ci right 1.258581e-01	k: 3663	n:30000
Cons ci ratio: 3.298158e-02	ci left: 3.148219e-01	ci right 3.254129e-01	k: 9603	n:30000
KS ci ratio: 8.330529e-02	ci left: 6.586293e-02	ci right 7.162093e-02	k: 2061	n:30000
OFD1   30000 perm   6 sec   (5263 perm/sec)   p_kst 6.870000e-02   p_cons 3.201000e-01   p_joint 1.221000e-01

Outputting figure to mutsig2_images.part000000000119/OFD1.4_3131_30000_0.0687_0.3201_0.1221.png
                gene_name: OFD1
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.069 
        ci_ks_bounds_left: 0.066 
       ci_ks_bounds_right: 0.072 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 39 percent done.
OIT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.530083e-02	ci left: 1.377611e-01	ci right 1.516466e-01	k: 1446	n:10000
Cons ci ratio: 5.265484e-02	ci left: 3.471054e-01	ci right 3.659783e-01	k: 3565	n:10000
KS ci ratio: 1.342088e-01	ci left: 7.330186e-02	ci right 8.394515e-02	k: 785	n:10000
OIT3   10000 perm   2 sec   (6398 perm/sec)   p_kst 7.850000e-02   p_cons 3.565000e-01   p_joint 1.446000e-01

Joint ci ratio: 6.781419e-02	ci left: 1.382740e-01	ci right 1.480299e-01	k: 2862	n:20000
Cons ci ratio: 3.737491e-02	ci left: 3.481656e-01	ci right 3.614766e-01	k: 7096	n:20000
KS ci ratio: 9.441389e-02	ci left: 7.559155e-02	ci right 8.313128e-02	k: 1586	n:20000
OIT3   20000 perm   3 sec   (5766 perm/sec)   p_kst 7.930000e-02   p_cons 3.548000e-01   p_joint 1.431000e-01

Outputting figure to mutsig2_images.part000000000119/OIT3.4_1674_20000_0.0793_0.3548_0.1431.png
                gene_name: OIT3
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.079 
        ci_ks_bounds_left: 0.076 
       ci_ks_bounds_right: 0.083 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 41 percent done.
OLFM4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.604575e-02	ci left: 2.518194e-01	ci right 2.691203e-01	k: 2604	n:10000
Cons ci ratio: 2.496038e-02	ci left: 7.025094e-01	ci right 7.203673e-01	k: 7115	n:10000
KS ci ratio: 1.168182e-01	ci left: 9.525826e-02	ci right 1.071752e-01	k: 1011	n:10000
OLFM4   10000 perm   2 sec   (6589 perm/sec)   p_kst 1.011000e-01   p_cons 7.115000e-01   p_joint 2.604000e-01

Joint ci ratio: 5.752079e-02	ci left: 1.830013e-01	ci right 1.938895e-01	k: 3768	n:20000
Cons ci ratio: 1.765222e-02	ci left: 7.051152e-01	ci right 7.177233e-01	k: 14229	n:20000
KS ci ratio: 8.385469e-02	ci left: 9.435467e-02	ci right 1.026625e-01	k: 1969	n:20000
OLFM4   20000 perm   3 sec   (5951 perm/sec)   p_kst 9.845000e-02   p_cons 7.114500e-01   p_joint 1.884000e-01

Outputting figure to mutsig2_images.part000000000119/OLFM4.4_1553_20000_0.09845_0.71145_0.1884.png
                gene_name: OLFM4
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.098 
        ci_ks_bounds_left: 0.094 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 43 percent done.
OAS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.692423e-02	ci left: 5.199601e-01	ci right 5.396225e-01	k: 5298	n:10000
Cons ci ratio: 5.669974e-02	ci left: 3.141351e-01	ci right 3.325679e-01	k: 3233	n:10000
KS ci ratio: 5.222166e-02	ci left: 3.508823e-01	ci right 3.697992e-01	k: 3603	n:10000
OAS1   10000 perm   2 sec   (6593 perm/sec)   p_kst 3.603000e-01   p_cons 3.233000e-01   p_joint 5.298000e-01

Outputting figure to mutsig2_images.part000000000119/OAS1.3_1424_10000_0.3603_0.3233_0.5298.png
                gene_name: OAS1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 46 percent done.
OBP2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.261065e-02	ci left: 2.727001e-01	ci right 2.904273e-01	k: 2815	n:10000
Cons ci ratio: 2.620585e-02	ci left: 6.819395e-01	ci right 7.001491e-01	k: 6911	n:10000
KS ci ratio: 1.124773e-01	ci left: 1.021764e-01	ci right 1.144528e-01	k: 1082	n:10000
OBP2A   10000 perm   1 sec   (7390 perm/sec)   p_kst 1.082000e-01   p_cons 6.911000e-01   p_joint 2.815000e-01

Joint ci ratio: 4.790103e-02	ci left: 2.448040e-01	ci right 2.568685e-01	k: 5016	n:20000
Cons ci ratio: 1.870903e-02	ci left: 6.805215e-01	ci right 6.934241e-01	k: 13740	n:20000
KS ci ratio: 8.208660e-02	ci left: 9.813315e-02	ci right 1.065829e-01	k: 2046	n:20000
OBP2A   20000 perm   3 sec   (6501 perm/sec)   p_kst 1.023000e-01   p_cons 6.870000e-01   p_joint 2.508000e-01

Outputting figure to mutsig2_images.part000000000119/OBP2A.3_537_20000_0.1023_0.687_0.2508.png
                gene_name: OBP2A
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.098 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 48 percent done.
OBSL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.695711e-02	ci left: 8.351090e-01	ci right 8.494910e-01	k: 8424	n:10000
KS ci ratio: 4.912899e-02	ci left: 3.793287e-01	ci right 3.985361e-01	k: 3889	n:10000
OBSL1   10000 perm   2 sec   (5144 perm/sec)   p_kst 3.889000e-01   p_cons 8.424000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000119/OBSL1.3_5927_10000_0.3889_0.8424_1.png
                gene_name: OBSL1
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
OGDH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.315067e-02	ci left: 7.326985e-01	ci right 7.499607e-01	k: 7414	n:10000
KS ci ratio: 2.194986e-02	ci left: 7.528195e-01	ci right 7.696281e-01	k: 7613	n:10000
OGDH   10000 perm   2 sec   (5919 perm/sec)   p_kst 7.613000e-01   p_cons 7.414000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000119/OGDH.3_3333_10000_0.7613_0.7414_1.png
                gene_name: OGDH
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 52 percent done.
OGFR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.204025e-02	ci left: 4.551856e-01	ci right 4.748348e-01	k: 4650	n:10000
Cons ci ratio: 2.074603e-02	ci left: 7.729656e-01	ci right 7.892703e-01	k: 7812	n:10000
KS ci ratio: 8.049148e-02	ci left: 1.839270e-01	ci right 1.994530e-01	k: 1916	n:10000
OGFR   10000 perm   2 sec   (6449 perm/sec)   p_kst 1.916000e-01   p_cons 7.812000e-01   p_joint 4.650000e-01

Outputting figure to mutsig2_images.part000000000119/OGFR.3_2062_10000_0.1916_0.7812_0.465.png
                gene_name: OGFR
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.47 

Current progress: 54 percent done.
OLFML2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.650160e-02	ci left: 8.423403e-01	ci right 8.564555e-01	k: 8495	n:10000
Cons ci ratio: 1.080520e-01	ci left: 1.099814e-01	ci right 1.226430e-01	k: 1162	n:10000
KS ci ratio: 2.353708e-02	ci left: 7.262324e-01	ci right 7.436305e-01	k: 7350	n:10000
OLFML2A   10000 perm   1 sec   (7132 perm/sec)   p_kst 7.350000e-01   p_cons 1.162000e-01   p_joint 8.495000e-01

Joint ci ratio: 1.160146e-02	ci left: 8.459383e-01	ci right 8.558595e-01	k: 17019	n:20000
Cons ci ratio: 7.769665e-02	ci left: 1.084964e-01	ci right 1.173165e-01	k: 2257	n:20000
KS ci ratio: 1.630404e-02	ci left: 7.368335e-01	ci right 7.489958e-01	k: 14859	n:20000
OLFML2A   20000 perm   3 sec   (6291 perm/sec)   p_kst 7.429500e-01   p_cons 1.128500e-01   p_joint 8.509500e-01

Outputting figure to mutsig2_images.part000000000119/OLFML2A.3_1991_20000_0.74295_0.11285_0.85095.png
                gene_name: OLFML2A
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 57 percent done.
OLFML2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.935483e-01	ci left: 3.557635e-02	ci right 4.329490e-02	k: 393	n:10000
Cons ci ratio: 1.718632e-02	ci left: 8.314445e-01	ci right 8.459577e-01	k: 8388	n:10000
KS ci ratio: 2.903464e-01	ci left: 1.529963e-02	ci right 2.058652e-02	k: 178	n:10000
OLFML2B   10000 perm   2 sec   (6225 perm/sec)   p_kst 1.780000e-02   p_cons 8.388000e-01   p_joint 3.930000e-02

Joint ci ratio: 7.552655e-02	ci left: 1.141990e-01	ci right 1.232122e-01	k: 2373	n:20000
Cons ci ratio: 1.242270e-02	ci left: 8.275045e-01	ci right 8.378985e-01	k: 16655	n:20000
KS ci ratio: 2.021709e-01	ci left: 1.658271e-02	ci right 2.035914e-02	k: 368	n:20000
OLFML2B   20000 perm   4 sec   (5593 perm/sec)   p_kst 1.840000e-02   p_cons 8.327500e-01   p_joint 1.186500e-01

Joint ci ratio: 8.541492e-02	ci left: 6.279123e-02	ci right 6.842658e-02	k: 1967	n:30000
Cons ci ratio: 1.010226e-02	ci left: 8.296060e-01	ci right 8.380626e-01	k: 25016	n:30000
KS ci ratio: 1.674783e-01	ci left: 1.642981e-02	ci right 1.946457e-02	k: 537	n:30000
OLFML2B   30000 perm   6 sec   (5390 perm/sec)   p_kst 1.790000e-02   p_cons 8.338667e-01   p_joint 6.556667e-02

Joint ci ratio: 6.527615e-02	ci left: 7.999409e-02	ci right 8.541667e-02	k: 3307	n:40000
Cons ci ratio: 8.709782e-03	ci left: 8.314266e-01	ci right 8.387247e-01	k: 33404	n:40000
KS ci ratio: 1.447673e-01	ci left: 1.669557e-02	ci right 1.932507e-02	k: 719	n:40000
OLFML2B   40000 perm   8 sec   (5225 perm/sec)   p_kst 1.797500e-02   p_cons 8.351000e-01   p_joint 8.267500e-02

Joint ci ratio: 6.137993e-02	ci left: 7.310037e-02	ci right 7.774907e-02	k: 3770	n:50000
Cons ci ratio: 7.780612e-03	ci left: 8.321606e-01	ci right 8.386805e-01	k: 41772	n:50000
KS ci ratio: 1.299258e-01	ci left: 1.671717e-02	ci right 1.905929e-02	k: 893	n:50000
OLFML2B   50000 perm   10 sec   (5100 perm/sec)   p_kst 1.786000e-02   p_cons 8.354400e-01   p_joint 7.540000e-02

Joint ci ratio: 6.294361e-02	ci left: 5.880235e-02	ci right 6.264027e-02	k: 3642	n:60000
Cons ci ratio: 7.116185e-03	ci left: 8.319215e-01	ci right 8.378794e-01	k: 50095	n:60000
KS ci ratio: 1.178695e-01	ci left: 1.703213e-02	ci right 1.918151e-02	k: 1085	n:60000
OLFML2B   60000 perm   12 sec   (4990 perm/sec)   p_kst 1.808333e-02   p_cons 8.349167e-01   p_joint 6.070000e-02

Joint ci ratio: 6.105424e-02	ci left: 5.391379e-02	ci right 5.732317e-02	k: 3892	n:70000
Cons ci ratio: 6.598930e-03	ci left: 8.316972e-01	ci right 8.372179e-01	k: 58413	n:70000
KS ci ratio: 1.105565e-01	ci left: 1.666659e-02	ci right 1.863082e-02	k: 1234	n:70000
OLFML2B   70000 perm   14 sec   (4873 perm/sec)   p_kst 1.762857e-02   p_cons 8.344714e-01   p_joint 5.560000e-02

Joint ci ratio: 5.945482e-02	ci left: 5.000315e-02	ci right 5.307947e-02	k: 4122	n:80000
Cons ci ratio: 5.996653e-03	ci left: 8.397684e-01	ci right 8.448318e-01	k: 67385	n:80000
KS ci ratio: 1.036193e-01	ci left: 1.666355e-02	ci right 1.849667e-02	k: 1405	n:80000
OLFML2B   80000 perm   17 sec   (4771 perm/sec)   p_kst 1.756250e-02   p_cons 8.423125e-01   p_joint 5.152500e-02

Joint ci ratio: 5.786176e-02	ci left: 4.711651e-02	ci right 4.993491e-02	k: 4366	n:90000
Cons ci ratio: 5.657503e-03	ci left: 8.397346e-01	ci right 8.445099e-01	k: 75792	n:90000
KS ci ratio: 9.762259e-02	ci left: 1.674011e-02	ci right 1.846896e-02	k: 1583	n:90000
OLFML2B   90000 perm   19 sec   (4679 perm/sec)   p_kst 1.758889e-02   p_cons 8.421333e-01   p_joint 4.851111e-02

Outputting figure to mutsig2_images.part000000000119/OLFML2B.3_2285_90000_0.017589_0.84213_0.048511.png
                gene_name: OLFML2B
               theta_stop: 0.098 
                    nperm: 90000 
                     p_ks: 0.018 
        ci_ks_bounds_left: 0.017 
       ci_ks_bounds_right: 0.018 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.049 
     ci_joint_bounds_left: 0.047 
    ci_joint_bounds_right: 0.050 

Current progress: 59 percent done.
OPHN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.289737e-02	ci left: 5.769745e-01	ci right 5.963749e-01	k: 5867	n:10000
KS ci ratio: 1.416165e-02	ci left: 8.781755e-01	ci right 8.907995e-01	k: 8846	n:10000
OPHN1   10000 perm   2 sec   (6263 perm/sec)   p_kst 8.846000e-01   p_cons 5.867000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000119/OPHN1.3_2501_10000_0.8846_0.5867_1.png
                gene_name: OPHN1
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 61 percent done.
OPN1LW
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.005264e-02	ci left: 1.856005e-01	ci right 2.011785e-01	k: 1933	n:10000
Cons ci ratio: 9.000262e-03	ci left: 9.455455e-01	ci right 9.541901e-01	k: 9500	n:10000
KS ci ratio: 1.680497e-01	ci left: 4.724933e-02	ci right 5.601420e-02	k: 515	n:10000
OPN1LW   10000 perm   1 sec   (7113 perm/sec)   p_kst 5.150000e-02   p_cons 9.500000e-01   p_joint 1.933000e-01

Joint ci ratio: 7.087729e-02	ci left: 1.279285e-01	ci right 1.373786e-01	k: 2652	n:20000
Cons ci ratio: 6.533705e-03	ci left: 9.442156e-01	ci right 9.504536e-01	k: 18948	n:20000
KS ci ratio: 1.201886e-01	ci left: 4.745718e-02	ci right 5.357434e-02	k: 1009	n:20000
OPN1LW   20000 perm   3 sec   (6301 perm/sec)   p_kst 5.045000e-02   p_cons 9.474000e-01   p_joint 1.326000e-01

Joint ci ratio: 9.265777e-02	ci left: 5.368549e-02	ci right 5.893419e-02	k: 1688	n:30000
Cons ci ratio: 5.312655e-03	ci left: 9.452226e-01	ci right 9.502902e-01	k: 28434	n:30000
KS ci ratio: 9.830525e-02	ci left: 4.785375e-02	ci right 5.283379e-02	k: 1509	n:30000
OPN1LW   30000 perm   5 sec   (5919 perm/sec)   p_kst 5.030000e-02   p_cons 9.478000e-01   p_joint 5.626667e-02

Outputting figure to mutsig2_images.part000000000119/OPN1LW.3_1119_30000_0.0503_0.9478_0.056267.png
                gene_name: OPN1LW
               theta_stop: 0.098 
                    nperm: 30000 
                     p_ks: 0.050 
        ci_ks_bounds_left: 0.048 
       ci_ks_bounds_right: 0.053 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.056 
     ci_joint_bounds_left: 0.054 
    ci_joint_bounds_right: 0.059 

Current progress: 63 percent done.
OPN1SW
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.525308e-02	ci left: 5.429908e-01	ci right 5.625785e-01	k: 5528	n:10000
Cons ci ratio: 7.166236e-02	ci left: 2.219788e-01	ci right 2.385786e-01	k: 2302	n:10000
KS ci ratio: 4.704442e-02	ci left: 4.000388e-01	ci right 4.194138e-01	k: 4097	n:10000
OPN1SW   10000 perm   1 sec   (7066 perm/sec)   p_kst 4.097000e-01   p_cons 2.302000e-01   p_joint 5.528000e-01

Outputting figure to mutsig2_images.part000000000119/OPN1SW.3_1067_10000_0.4097_0.2302_0.5528.png
                gene_name: OPN1SW
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 65 percent done.
OPN5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.767632e-03	ci left: 9.758897e-01	ci right 9.816267e-01	k: 9789	n:10000
Cons ci ratio: 2.749650e-02	ci left: 6.608869e-01	ci right 6.794139e-01	k: 6702	n:10000
KS ci ratio: 3.251899e-02	ci left: 5.825929e-01	ci right 6.019533e-01	k: 5923	n:10000
OPN5   10000 perm   1 sec   (6823 perm/sec)   p_kst 5.923000e-01   p_cons 6.702000e-01   p_joint 9.789000e-01

Outputting figure to mutsig2_images.part000000000119/OPN5.3_1093_10000_0.5923_0.6702_0.9789.png
                gene_name: OPN5
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 67 percent done.
OAS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.019464e-01	ci left: 1.221955e-01	ci right 1.354215e-01	k: 1287	n:10000
Cons ci ratio: 1.008262e-01	ci left: 1.246409e-01	ci right 1.379747e-01	k: 1312	n:10000
KS ci ratio: 5.541639e-02	ci left: 3.241598e-01	ci right 3.427373e-01	k: 3334	n:10000
OAS3   10000 perm   2 sec   (5884 perm/sec)   p_kst 3.334000e-01   p_cons 1.312000e-01   p_joint 1.287000e-01

Joint ci ratio: 8.811083e-02	ci left: 8.606860e-02	ci right 9.405105e-02	k: 1800	n:20000
Cons ci ratio: 7.114030e-02	ci left: 1.270914e-01	ci right 1.365159e-01	k: 2635	n:20000
KS ci ratio: 3.905346e-02	ci left: 3.284083e-01	ci right 3.415397e-01	k: 6699	n:20000
OAS3   20000 perm   4 sec   (5383 perm/sec)   p_kst 3.349500e-01   p_cons 1.317500e-01   p_joint 9.000000e-02

Outputting figure to mutsig2_images.part000000000119/OAS3.2_3328_20000_0.33495_0.13175_0.09.png
                gene_name: OAS3
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.090 
     ci_joint_bounds_left: 0.086 
    ci_joint_bounds_right: 0.094 

Current progress: 70 percent done.
OCIAD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.125049e-02	ci left: 3.595318e-01	ci right 3.785446e-01	k: 3690	n:10000
KS ci ratio: 1.118333e-02	ci left: 9.194566e-01	ci right 9.298944e-01	k: 9248	n:10000
OCIAD2   10000 perm   1 sec   (7583 perm/sec)   p_kst 9.248000e-01   p_cons 3.690000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000119/OCIAD2.2_489_10000_0.9248_0.369_1.png
                gene_name: OCIAD2
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
ODF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.924317e-02	ci left: 2.953892e-01	ci right 3.135248e-01	k: 3044	n:10000
KS ci ratio: 3.585304e-03	ci left: 9.898317e-01	ci right 9.934731e-01	k: 9918	n:10000
ODF2   10000 perm   2 sec   (6470 perm/sec)   p_kst 9.918000e-01   p_cons 3.044000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000119/ODF2.2_2688_10000_0.9918_0.3044_1.png
                gene_name: ODF2
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 74 percent done.
OGFOD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.802080e-02	ci left: 3.901793e-01	ci right 4.094791e-01	k: 3998	n:10000
Cons ci ratio: 2.710561e-02	ci left: 6.672307e-01	ci right 6.856665e-01	k: 6765	n:10000
KS ci ratio: 9.419989e-02	ci left: 1.406033e-01	ci right 1.546027e-01	k: 1475	n:10000
OGFOD1   10000 perm   1 sec   (6946 perm/sec)   p_kst 1.475000e-01   p_cons 6.765000e-01   p_joint 3.998000e-01

Outputting figure to mutsig2_images.part000000000119/OGFOD1.2_1681_10000_0.1475_0.6765_0.3998.png
                gene_name: OGFOD1
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 76 percent done.
OGT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.463647e-02	ci left: 2.080667e-01	ci right 2.242990e-01	k: 2161	n:10000
Cons ci ratio: 1.195989e-01	ci left: 9.117000e-02	ci right 1.028660e-01	k: 969	n:10000
KS ci ratio: 3.595726e-02	ci left: 5.331752e-01	ci right 5.527998e-01	k: 5430	n:10000
OGT   10000 perm   2 sec   (6227 perm/sec)   p_kst 5.430000e-01   p_cons 9.690000e-02   p_joint 2.161000e-01

Joint ci ratio: 4.469771e-02	ci left: 2.715007e-01	ci right 2.839640e-01	k: 5554	n:20000
Cons ci ratio: 8.445036e-02	ci left: 9.312830e-02	ci right 1.013892e-01	k: 1944	n:20000
KS ci ratio: 2.587109e-02	ci left: 5.274573e-01	ci right 5.413327e-01	k: 10688	n:20000
OGT   20000 perm   4 sec   (5616 perm/sec)   p_kst 5.344000e-01   p_cons 9.720000e-02   p_joint 2.777000e-01

Outputting figure to mutsig2_images.part000000000119/OGT.2_3229_20000_0.5344_0.0972_0.2777.png
                gene_name: OGT
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.097 
      ci_cons_bounds_left: 0.093 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 78 percent done.
OLAH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.339773e-01	ci left: 2.410011e-02	ci right 3.057918e-02	k: 272	n:10000
Cons ci ratio: 5.766130e-01	ci left: 3.284168e-03	ci right 6.016771e-03	k: 45	n:10000
KS ci ratio: 4.215870e-02	ci left: 4.537880e-01	ci right 4.734332e-01	k: 4636	n:10000
OLAH   10000 perm   1 sec   (7159 perm/sec)   p_kst 4.636000e-01   p_cons 4.500000e-03   p_joint 2.720000e-02

Joint ci ratio: 1.423089e-01	ci left: 3.394357e-02	ci right 3.919227e-02	k: 730	n:20000
Cons ci ratio: 4.242687e-01	ci left: 3.351426e-03	ci right 5.197284e-03	k: 84	n:20000
KS ci ratio: 2.968461e-02	ci left: 4.588172e-01	ci right 4.726928e-01	k: 9315	n:20000
OLAH   20000 perm   3 sec   (6454 perm/sec)   p_kst 4.657500e-01   p_cons 4.200000e-03   p_joint 3.650000e-02

Joint ci ratio: 1.488334e-01	ci left: 2.091575e-02	ci right 2.431090e-02	k: 677	n:30000
Cons ci ratio: 3.378737e-01	ci left: 3.713216e-03	ci right 5.251843e-03	k: 133	n:30000
KS ci ratio: 2.439037e-02	ci left: 4.569784e-01	ci right 4.682955e-01	k: 13879	n:30000
OLAH   30000 perm   5 sec   (6159 perm/sec)   p_kst 4.626333e-01   p_cons 4.433333e-03   p_joint 2.256667e-02

Joint ci ratio: 1.317556e-01	ci left: 2.022187e-02	ci right 2.309816e-02	k: 865	n:40000
Cons ci ratio: 2.982502e-01	ci left: 3.659335e-03	ci right 4.964242e-03	k: 171	n:40000
KS ci ratio: 2.105654e-02	ci left: 4.593029e-01	ci right 4.691023e-01	k: 18568	n:40000
OLAH   40000 perm   7 sec   (5952 perm/sec)   p_kst 4.642000e-01   p_cons 4.275000e-03   p_joint 2.162500e-02

Joint ci ratio: 1.869118e-01	ci left: 7.904622e-03	ci right 9.553176e-03	k: 435	n:50000
Cons ci ratio: 2.692912e-01	ci left: 3.652089e-03	ci right 4.806639e-03	k: 210	n:50000
KS ci ratio: 1.885264e-02	ci left: 4.593212e-01	ci right 4.680830e-01	k: 23185	n:50000
OLAH   50000 perm   9 sec   (5801 perm/sec)   p_kst 4.637000e-01   p_cons 4.200000e-03   p_joint 8.700000e-03

Joint ci ratio: 1.857658e-01	ci left: 6.682119e-03	ci right 8.066173e-03	k: 441	n:60000
Cons ci ratio: 2.474035e-01	ci left: 3.651383e-03	ci right 4.697472e-03	k: 249	n:60000
KS ci ratio: 1.724014e-02	ci left: 4.588372e-01	ci right 4.668331e-01	k: 27770	n:60000
OLAH   60000 perm   11 sec   (5668 perm/sec)   p_kst 4.628333e-01   p_cons 4.150000e-03   p_joint 7.350000e-03

Joint ci ratio: 1.724357e-01	ci left: 6.696398e-03	ci right 7.973522e-03	k: 512	n:70000
Cons ci ratio: 2.333761e-01	ci left: 3.545935e-03	ci right 4.495905e-03	k: 280	n:70000
KS ci ratio: 1.597984e-02	ci left: 4.585582e-01	ci right 4.659592e-01	k: 32358	n:70000
OLAH   70000 perm   13 sec   (5546 perm/sec)   p_kst 4.622571e-01   p_cons 4.000000e-03   p_joint 7.314286e-03

Joint ci ratio: 1.489129e-01	ci left: 7.947696e-03	ci right 9.238321e-03	k: 686	n:80000
Cons ci ratio: 2.183523e-01	ci left: 3.574436e-03	ci right 4.462128e-03	k: 320	n:80000
KS ci ratio: 1.496721e-02	ci left: 4.581532e-01	ci right 4.650746e-01	k: 36929	n:80000
OLAH   80000 perm   15 sec   (5431 perm/sec)   p_kst 4.616125e-01   p_cons 4.000000e-03   p_joint 8.575000e-03

Joint ci ratio: 1.406606e-01	ci left: 7.953451e-03	ci right 9.167432e-03	k: 769	n:90000
Cons ci ratio: 2.042036e-01	ci left: 3.661386e-03	ci right 4.504405e-03	k: 366	n:90000
KS ci ratio: 1.413434e-02	ci left: 4.575392e-01	ci right 4.640633e-01	k: 41472	n:90000
OLAH   90000 perm   17 sec   (5322 perm/sec)   p_kst 4.608000e-01   p_cons 4.066667e-03   p_joint 8.544444e-03

Joint ci ratio: 1.341205e-01	ci left: 7.901633e-03	ci right 9.047151e-03	k: 846	n:100000
Cons ci ratio: 1.934338e-01	ci left: 3.694357e-03	ci right 4.494828e-03	k: 408	n:100000
KS ci ratio: 1.339070e-02	ci left: 4.583864e-01	ci right 4.645758e-01	k: 46148	n:100000
OLAH   100000 perm   19 sec   (5215 perm/sec)   p_kst 4.614800e-01   p_cons 4.080000e-03   p_joint 8.460000e-03

Joint ci ratio: 1.404957e-01	ci left: 6.533343e-03	ci right 7.529279e-03	k: 772	n:110000
Cons ci ratio: 1.856583e-01	ci left: 3.661588e-03	ci right 4.419475e-03	k: 443	n:110000
KS ci ratio: 1.276354e-02	ci left: 4.586868e-01	ci right 4.645879e-01	k: 50780	n:110000
OLAH   110000 perm   22 sec   (5073 perm/sec)   p_kst 4.616364e-01   p_cons 4.027273e-03   p_joint 7.018182e-03

Joint ci ratio: 1.220960e-01	ci left: 7.996405e-03	ci right 9.044221e-03	k: 1021	n:120000
Cons ci ratio: 1.760050e-01	ci left: 3.754288e-03	ci right 4.486662e-03	k: 493	n:120000
KS ci ratio: 1.222107e-02	ci left: 4.587762e-01	ci right 4.644257e-01	k: 55392	n:120000
OLAH   120000 perm   24 sec   (4975 perm/sec)   p_kst 4.616000e-01   p_cons 4.108333e-03   p_joint 8.508333e-03

Joint ci ratio: 1.282893e-01	ci left: 6.673103e-03	ci right 7.595241e-03	k: 926	n:130000
Cons ci ratio: 1.697651e-01	ci left: 3.737796e-03	ci right 4.438456e-03	k: 530	n:130000
KS ci ratio: 1.175964e-02	ci left: 4.581259e-01	ci right 4.635528e-01	k: 59909	n:130000
OLAH   130000 perm   27 sec   (4889 perm/sec)   p_kst 4.608385e-01   p_cons 4.076923e-03   p_joint 7.123077e-03

Joint ci ratio: 1.238922e-01	ci left: 6.659928e-03	ci right 7.546386e-03	k: 993	n:140000
Cons ci ratio: 1.642902e-01	ci left: 3.717202e-03	ci right 4.389309e-03	k: 566	n:140000
KS ci ratio: 1.133113e-02	ci left: 4.582576e-01	ci right 4.634869e-01	k: 64522	n:140000
OLAH   140000 perm   29 sec   (4803 perm/sec)   p_kst 4.608714e-01   p_cons 4.042857e-03   p_joint 7.092857e-03

Joint ci ratio: 1.194093e-01	ci left: 6.707193e-03	ci right 7.565357e-03	k: 1069	n:150000
Cons ci ratio: 1.589166e-01	ci left: 3.718876e-03	ci right 4.367193e-03	k: 605	n:150000
KS ci ratio: 1.094923e-02	ci left: 4.582416e-01	ci right 4.632932e-01	k: 69115	n:150000
OLAH   150000 perm   32 sec   (4726 perm/sec)   p_kst 4.607667e-01   p_cons 4.033333e-03   p_joint 7.126667e-03

Joint ci ratio: 1.156346e-01	ci left: 6.718702e-03	ci right 7.549308e-03	k: 1140	n:160000
Cons ci ratio: 1.556205e-01	ci left: 3.642540e-03	ci right 4.263148e-03	k: 631	n:160000
KS ci ratio: 1.059311e-02	ci left: 4.587175e-01	ci right 4.636089e-01	k: 73786	n:160000
OLAH   160000 perm   34 sec   (4648 perm/sec)   p_kst 4.611625e-01   p_cons 3.943750e-03   p_joint 7.125000e-03

Joint ci ratio: 1.125244e-01	ci left: 6.689207e-03	ci right 7.492447e-03	k: 1204	n:170000
Cons ci ratio: 1.517130e-01	ci left: 3.614922e-03	ci right 4.213956e-03	k: 664	n:170000
KS ci ratio: 1.027642e-02	ci left: 4.588105e-01	ci right 4.635556e-01	k: 78401	n:170000
OLAH   170000 perm   37 sec   (4574 perm/sec)   p_kst 4.611824e-01   p_cons 3.905882e-03   p_joint 7.082353e-03

Joint ci ratio: 1.095654e-01	ci left: 6.674064e-03	ci right 7.453050e-03	k: 1270	n:180000
Cons ci ratio: 1.476617e-01	ci left: 3.611950e-03	ci right 4.193096e-03	k: 701	n:180000
KS ci ratio: 9.977612e-03	ci left: 4.593393e-01	ci right 4.639509e-01	k: 83096	n:180000
OLAH   180000 perm   40 sec   (4501 perm/sec)   p_kst 4.616444e-01   p_cons 3.894444e-03   p_joint 7.055556e-03

Joint ci ratio: 1.065876e-01	ci left: 6.691505e-03	ci right 7.449968e-03	k: 1342	n:190000
Cons ci ratio: 1.438208e-01	ci left: 3.614555e-03	ci right 4.179694e-03	k: 739	n:190000
KS ci ratio: 9.712265e-03	ci left: 4.593616e-01	ci right 4.638501e-01	k: 87705	n:190000
OLAH   190000 perm   43 sec   (4431 perm/sec)   p_kst 4.616053e-01   p_cons 3.889474e-03   p_joint 7.063158e-03

Joint ci ratio: 1.038771e-01	ci left: 6.702588e-03	ci right 7.441807e-03	k: 1413	n:200000
Cons ci ratio: 1.403554e-01	ci left: 3.612251e-03	ci right 4.162282e-03	k: 776	n:200000
KS ci ratio: 9.470068e-03	ci left: 4.592233e-01	ci right 4.635978e-01	k: 92282	n:200000
OLAH   200000 perm   46 sec   (4365 perm/sec)   p_kst 4.614100e-01   p_cons 3.880000e-03   p_joint 7.065000e-03

Joint ci ratio: 1.013977e-01	ci left: 6.708195e-03	ci right 7.429322e-03	k: 1483	n:210000
Cons ci ratio: 1.367921e-01	ci left: 3.628711e-03	ci right 4.166078e-03	k: 817	n:210000
KS ci ratio: 9.239905e-03	ci left: 4.593803e-01	ci right 4.636493e-01	k: 96918	n:210000
OLAH   210000 perm   49 sec   (4297 perm/sec)   p_kst 4.615143e-01   p_cons 3.890476e-03   p_joint 7.061905e-03

Joint ci ratio: 9.889573e-02	ci left: 6.740084e-03	ci right 7.445723e-03	k: 1559	n:220000
Cons ci ratio: 1.336433e-01	ci left: 3.635046e-03	ci right 4.159976e-03	k: 856	n:220000
KS ci ratio: 9.034749e-03	ci left: 4.590289e-01	ci right 4.631994e-01	k: 101445	n:220000
OLAH   220000 perm   52 sec   (4231 perm/sec)   p_kst 4.611136e-01   p_cons 3.890909e-03   p_joint 7.086364e-03

Joint ci ratio: 9.695900e-02	ci left: 6.714237e-03	ci right 7.402621e-03	k: 1622	n:230000
Cons ci ratio: 1.313664e-01	ci left: 3.603108e-03	ci right 4.113869e-03	k: 886	n:230000
KS ci ratio: 8.835012e-03	ci left: 4.591394e-01	ci right 4.632181e-01	k: 106071	n:230000
OLAH   230000 perm   55 sec   (4161 perm/sec)   p_kst 4.611783e-01   p_cons 3.852174e-03   p_joint 7.052174e-03

Joint ci ratio: 9.530269e-02	ci left: 6.666259e-03	ci right 7.337396e-03	k: 1679	n:240000
Cons ci ratio: 1.291313e-01	ci left: 3.577933e-03	ci right 4.075835e-03	k: 917	n:240000
KS ci ratio: 8.653185e-03	ci left: 4.589416e-01	ci right 4.629343e-01	k: 110625	n:240000
OLAH   240000 perm   59 sec   (4097 perm/sec)   p_kst 4.609375e-01   p_cons 3.820833e-03   p_joint 6.995833e-03

Joint ci ratio: 9.313631e-02	ci left: 6.708170e-03	ci right 7.367337e-03	k: 1758	n:250000
Cons ci ratio: 1.258144e-01	ci left: 3.624571e-03	ci right 4.115041e-03	k: 966	n:250000
KS ci ratio: 8.473539e-03	ci left: 4.592644e-01	ci right 4.631765e-01	k: 115305	n:250000
OLAH   250000 perm   62 sec   (4038 perm/sec)   p_kst 4.612200e-01   p_cons 3.864000e-03   p_joint 7.032000e-03

Joint ci ratio: 9.138706e-02	ci left: 6.705666e-03	ci right 7.351550e-03	k: 1826	n:260000
Cons ci ratio: 1.233515e-01	ci left: 3.630491e-03	ci right 4.111442e-03	k: 1005	n:260000
KS ci ratio: 8.309776e-03	ci left: 4.592555e-01	ci right 4.630915e-01	k: 119905	n:260000
OLAH   260000 perm   65 sec   (3971 perm/sec)   p_kst 4.611731e-01   p_cons 3.865385e-03   p_joint 7.023077e-03

Joint ci ratio: 8.963758e-02	ci left: 6.717941e-03	ci right 7.351970e-03	k: 1898	n:270000
Cons ci ratio: 1.214955e-01	ci left: 3.607324e-03	ci right 4.077499e-03	k: 1036	n:270000
KS ci ratio: 8.157160e-03	ci left: 4.591257e-01	ci right 4.628899e-01	k: 124472	n:270000
OLAH   270000 perm   69 sec   (3911 perm/sec)   p_kst 4.610074e-01   p_cons 3.837037e-03   p_joint 7.029630e-03

Joint ci ratio: 8.834672e-02	ci left: 6.673556e-03	ci right 7.293857e-03	k: 1954	n:280000
Cons ci ratio: 1.195524e-01	ci left: 3.596258e-03	ci right 4.056963e-03	k: 1070	n:280000
KS ci ratio: 8.008048e-03	ci left: 4.592915e-01	ci right 4.629879e-01	k: 129119	n:280000
OLAH   280000 perm   73 sec   (3860 perm/sec)   p_kst 4.611393e-01   p_cons 3.821429e-03   p_joint 6.978571e-03

Joint ci ratio: 8.680629e-02	ci left: 6.679527e-03	ci right 7.289009e-03	k: 2024	n:290000
Cons ci ratio: 1.173802e-01	ci left: 3.606094e-03	ci right 4.059083e-03	k: 1110	n:290000
KS ci ratio: 7.868681e-03	ci left: 4.593292e-01	ci right 4.629612e-01	k: 133732	n:290000
OLAH   290000 perm   76 sec   (3810 perm/sec)   p_kst 4.611448e-01   p_cons 3.827586e-03   p_joint 6.979310e-03

Joint ci ratio: 8.530273e-02	ci left: 6.691713e-03	ci right 7.291204e-03	k: 2096	n:300000
Cons ci ratio: 1.152218e-01	ci left: 3.621819e-03	ci right 4.067849e-03	k: 1152	n:300000
KS ci ratio: 7.737020e-03	ci left: 4.593216e-01	ci right 4.628925e-01	k: 138332	n:300000
OLAH   300000 perm   80 sec   (3759 perm/sec)   p_kst 4.611067e-01   p_cons 3.840000e-03   p_joint 6.986667e-03

Joint ci ratio: 8.371935e-02	ci left: 6.728467e-03	ci right 7.319515e-03	k: 2176	n:310000
Cons ci ratio: 1.129412e-01	ci left: 3.652276e-03	ci right 4.092562e-03	k: 1199	n:310000
KS ci ratio: 7.611360e-03	ci left: 4.593408e-01	ci right 4.628535e-01	k: 142940	n:310000
OLAH   310000 perm   84 sec   (3708 perm/sec)   p_kst 4.610968e-01   p_cons 3.867742e-03   p_joint 7.019355e-03

Joint ci ratio: 8.242350e-02	ci left: 6.729348e-03	ci right 7.310884e-03	k: 2245	n:320000
Cons ci ratio: 1.116481e-01	ci left: 3.623182e-03	ci right 4.054630e-03	k: 1227	n:320000
KS ci ratio: 7.492619e-03	ci left: 4.592936e-01	ci right 4.627509e-01	k: 147527	n:320000
OLAH   320000 perm   88 sec   (3655 perm/sec)   p_kst 4.610219e-01   p_cons 3.834375e-03   p_joint 7.015625e-03

Joint ci ratio: 8.327646e-02	ci left: 6.391844e-03	ci right 6.950206e-03	k: 2200	n:330000
Cons ci ratio: 1.096991e-01	ci left: 3.643033e-03	ci right 4.068783e-03	k: 1271	n:330000
KS ci ratio: 7.377692e-03	ci left: 4.593557e-01	ci right 4.627602e-01	k: 152149	n:330000
OLAH   330000 perm   91 sec   (3607 perm/sec)   p_kst 4.610576e-01   p_cons 3.851515e-03   p_joint 6.666667e-03

Joint ci ratio: 8.000265e-02	ci left: 6.731144e-03	ci right 7.294954e-03	k: 2383	n:340000
Cons ci ratio: 1.088498e-01	ci left: 3.593096e-03	ci right 4.009549e-03	k: 1291	n:340000
KS ci ratio: 7.270177e-03	ci left: 4.592586e-01	ci right 4.626126e-01	k: 156718	n:340000
OLAH   340000 perm   95 sec   (3562 perm/sec)   p_kst 4.609353e-01   p_cons 3.797059e-03   p_joint 7.008824e-03

Joint ci ratio: 7.877260e-02	ci left: 6.748860e-03	ci right 7.305063e-03	k: 2458	n:350000
Cons ci ratio: 1.074865e-01	ci left: 3.582170e-03	ci right 3.991828e-03	k: 1324	n:350000
KS ci ratio: 7.167063e-03	ci left: 4.591789e-01	ci right 4.624846e-01	k: 161291	n:350000
OLAH   350000 perm   99 sec   (3518 perm/sec)   p_kst 4.608314e-01   p_cons 3.782857e-03   p_joint 7.022857e-03

Joint ci ratio: 7.775225e-02	ci left: 6.738412e-03	ci right 7.286235e-03	k: 2523	n:360000
Cons ci ratio: 1.057054e-01	ci left: 3.604334e-03	ci right 4.009273e-03	k: 1369	n:360000
KS ci ratio: 7.066280e-03	ci left: 4.592401e-01	ci right 4.624994e-01	k: 165913	n:360000
OLAH   360000 perm   104 sec   (3473 perm/sec)   p_kst 4.608694e-01   p_cons 3.802778e-03   p_joint 7.008333e-03

Joint ci ratio: 7.683035e-02	ci left: 6.717968e-03	ci right 7.257364e-03	k: 2584	n:370000
Cons ci ratio: 1.041950e-01	ci left: 3.612191e-03	ci right 4.011858e-03	k: 1409	n:370000
KS ci ratio: 6.968571e-03	ci left: 4.593739e-01	ci right 4.625889e-01	k: 170563	n:370000
OLAH   370000 perm   108 sec   (3429 perm/sec)   p_kst 4.609811e-01   p_cons 3.808108e-03   p_joint 6.983784e-03

Joint ci ratio: 7.562452e-02	ci left: 6.755442e-03	ci right 7.288959e-03	k: 2667	n:380000
Cons ci ratio: 1.025348e-01	ci left: 3.635059e-03	ci right 4.030461e-03	k: 1455	n:380000
KS ci ratio: 6.876699e-03	ci left: 4.593641e-01	ci right 4.625365e-01	k: 175161	n:380000
OLAH   380000 perm   112 sec   (3387 perm/sec)   p_kst 4.609500e-01   p_cons 3.828947e-03   p_joint 7.018421e-03

Joint ci ratio: 7.477543e-02	ci left: 6.735692e-03	ci right 7.261417e-03	k: 2728	n:390000
Cons ci ratio: 1.013929e-01	ci left: 3.624309e-03	ci right 4.013890e-03	k: 1488	n:390000
KS ci ratio: 6.786231e-03	ci left: 4.595115e-01	ci right 4.626430e-01	k: 179820	n:390000
OLAH   390000 perm   117 sec   (3344 perm/sec)   p_kst 4.610769e-01   p_cons 3.815385e-03   p_joint 6.994872e-03

Joint ci ratio: 7.382121e-02	ci left: 6.741502e-03	ci right 7.260678e-03	k: 2799	n:400000
Cons ci ratio: 1.000905e-01	ci left: 3.628745e-03	ci right 4.013498e-03	k: 1527	n:400000
KS ci ratio: 6.699443e-03	ci left: 4.596367e-01	ci right 4.627288e-01	k: 184473	n:400000
OLAH   400000 perm   121 sec   (3306 perm/sec)   p_kst 4.611825e-01   p_cons 3.817500e-03   p_joint 6.997500e-03

Joint ci ratio: 7.291539e-02	ci left: 6.744675e-03	ci right 7.257451e-03	k: 2869	n:410000
Cons ci ratio: 9.867908e-02	ci left: 3.644890e-03	ci right 4.025590e-03	k: 1571	n:410000
KS ci ratio: 6.616714e-03	ci left: 4.596951e-01	ci right 4.627493e-01	k: 189101	n:410000
OLAH   410000 perm   125 sec   (3269 perm/sec)   p_kst 4.612220e-01   p_cons 3.831707e-03   p_joint 6.997561e-03

Outputting figure to mutsig2_images.part000000000119/OLAH.2_989_410000_0.46122_0.0038317_0.0069976.png
                gene_name: OLAH
               theta_stop: 0.099 
                    nperm: 410000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.0038 
      ci_cons_bounds_left: 0.0036 
     ci_cons_bounds_right: 0.0040 
                  p_joint: 0.0070 
     ci_joint_bounds_left: 0.0067 
    ci_joint_bounds_right: 0.0073 

Current progress: 80 percent done.
OLFM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.320754e-02	ci left: 4.416119e-01	ci right 4.612164e-01	k: 4514	n:10000
Cons ci ratio: 2.634893e-03	ci left: 9.940977e-01	ci right 9.968012e-01	k: 9956	n:10000
KS ci ratio: 1.083156e-01	ci left: 1.094933e-01	ci right 1.221314e-01	k: 1157	n:10000
OLFM2   10000 perm   1 sec   (6983 perm/sec)   p_kst 1.157000e-01   p_cons 9.956000e-01   p_joint 4.514000e-01

Joint ci ratio: 6.312323e-02	ci left: 1.565232e-01	ci right 1.667754e-01	k: 3232	n:20000
Cons ci ratio: 1.767362e-03	ci left: 9.950241e-01	ci right 9.968270e-01	k: 19920	n:20000
KS ci ratio: 7.590801e-02	ci left: 1.131663e-01	ci right 1.221451e-01	k: 2352	n:20000
OLFM2   20000 perm   3 sec   (6188 perm/sec)   p_kst 1.176000e-01   p_cons 9.960000e-01   p_joint 1.616000e-01

Outputting figure to mutsig2_images.part000000000119/OLFM2.2_1389_20000_0.1176_0.996_0.1616.png
                gene_name: OLFM2
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 83 percent done.
ONECUT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.627528e-02	ci left: 1.353117e-01	ci right 1.490975e-01	k: 1421	n:10000
Cons ci ratio: 8.064764e-02	ci left: 1.833364e-01	ci right 1.988440e-01	k: 1910	n:10000
KS ci ratio: 6.310950e-02	ci left: 2.695318e-01	ci right 2.871975e-01	k: 2783	n:10000
ONECUT2   10000 perm   1 sec   (7468 perm/sec)   p_kst 2.783000e-01   p_cons 1.910000e-01   p_joint 1.421000e-01

Outputting figure to mutsig2_images.part000000000119/ONECUT2.2_1523_10000_0.2783_0.191_0.1421.png
                gene_name: ONECUT2
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 85 percent done.
OOEP
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 87 percent done.
OPALIN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.093240e-02	ci left: 9.226548e-01	ci right 9.328943e-01	k: 9279	n:10000
Cons ci ratio: 3.364216e-02	ci left: 5.660425e-01	ci right 5.855133e-01	k: 5758	n:10000
KS ci ratio: 1.405052e-02	ci left: 8.798130e-01	ci right 8.923611e-01	k: 8862	n:10000
OPALIN   10000 perm   1 sec   (7604 perm/sec)   p_kst 8.862000e-01   p_cons 5.758000e-01   p_joint 9.279000e-01

Outputting figure to mutsig2_images.part000000000119/OPALIN.2_463_10000_0.8862_0.5758_0.9279.png
                gene_name: OPALIN
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 89 percent done.
OPN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.170758e-01	ci left: 9.486876e-02	ci right 1.067649e-01	k: 1007	n:10000
Cons ci ratio: 2.152427e-01	ci left: 2.863733e-02	ci right 3.563870e-02	k: 320	n:10000
KS ci ratio: 1.168182e-01	ci left: 9.525826e-02	ci right 1.071752e-01	k: 1011	n:10000
OPN3   10000 perm   1 sec   (7362 perm/sec)   p_kst 1.011000e-01   p_cons 3.200000e-02   p_joint 1.007000e-01

Joint ci ratio: 1.172820e-01	ci left: 4.978945e-02	ci right 5.604134e-02	k: 1057	n:20000
Cons ci ratio: 1.501612e-01	ci left: 3.047099e-02	ci right 3.546599e-02	k: 658	n:20000
KS ci ratio: 8.324667e-02	ci left: 9.563031e-02	ci right 1.039865e-01	k: 1995	n:20000
OPN3   20000 perm   3 sec   (6539 perm/sec)   p_kst 9.975000e-02   p_cons 3.290000e-02   p_joint 5.285000e-02

Joint ci ratio: 1.331807e-01	ci left: 2.619459e-02	ci right 2.996421e-02	k: 841	n:30000
Cons ci ratio: 1.218759e-01	ci left: 3.129835e-02	ci right 3.539267e-02	k: 999	n:30000
KS ci ratio: 6.738504e-02	ci left: 9.794060e-02	ci right 1.048035e-01	k: 3040	n:30000
OPN3   30000 perm   5 sec   (6160 perm/sec)   p_kst 1.013333e-01   p_cons 3.330000e-02   p_joint 2.803333e-02

Joint ci ratio: 1.497134e-01	ci left: 1.558726e-02	ci right 1.813357e-02	k: 673	n:40000
Cons ci ratio: 1.068962e-01	ci left: 3.078376e-02	ci right 3.428453e-02	k: 1300	n:40000
KS ci ratio: 5.879943e-02	ci left: 9.705199e-02	ci right 1.029562e-01	k: 3999	n:40000
OPN3   40000 perm   7 sec   (5950 perm/sec)   p_kst 9.997500e-02   p_cons 3.250000e-02   p_joint 1.682500e-02

Joint ci ratio: 1.029108e-01	ci left: 2.674691e-02	ci right 2.966821e-02	k: 1409	n:50000
Cons ci ratio: 9.580153e-02	ci left: 3.084569e-02	ci right 3.396891e-02	k: 1619	n:50000
KS ci ratio: 5.272088e-02	ci left: 9.692912e-02	ci right 1.021975e-01	k: 4977	n:50000
OPN3   50000 perm   9 sec   (5776 perm/sec)   p_kst 9.954000e-02   p_cons 3.238000e-02   p_joint 2.818000e-02

Joint ci ratio: 9.388732e-02	ci left: 2.690621e-02	ci right 2.957302e-02	k: 1693	n:60000
Cons ci ratio: 8.771136e-02	ci left: 3.080181e-02	ci right 3.364367e-02	k: 1932	n:60000
KS ci ratio: 4.810774e-02	ci left: 9.723138e-02	ci right 1.020408e-01	k: 5977	n:60000
OPN3   60000 perm   11 sec   (5631 perm/sec)   p_kst 9.961667e-02   p_cons 3.220000e-02   p_joint 2.821667e-02

Outputting figure to mutsig2_images.part000000000119/OPN3.2_1225_60000_0.099617_0.0322_0.028217.png
                gene_name: OPN3
               theta_stop: 0.094 
                    nperm: 60000 
                     p_ks: 0.100 
        ci_ks_bounds_left: 0.097 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.032 
      ci_cons_bounds_left: 0.031 
     ci_cons_bounds_right: 0.034 
                  p_joint: 0.028 
     ci_joint_bounds_left: 0.027 
    ci_joint_bounds_right: 0.030 

Current progress: 91 percent done.
OPN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.312124e-02	ci left: 8.932351e-01	ci right 9.051312e-01	k: 8993	n:10000
KS ci ratio: 8.205735e-03	ci left: 9.539874e-01	ci right 9.619430e-01	k: 9581	n:10000
OPN4   10000 perm   1 sec   (6969 perm/sec)   p_kst 9.581000e-01   p_cons 8.993000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000119/OPN4.2_1514_10000_0.9581_0.8993_1.png
                gene_name: OPN4
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
OPRD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.844114e-02	ci left: 4.998504e-01	ci right 5.195439e-01	k: 5097	n:10000
Cons ci ratio: 1.943528e-02	ci left: 7.947624e-01	ci right 8.104609e-01	k: 8027	n:10000
KS ci ratio: 5.623661e-02	ci left: 3.177077e-01	ci right 3.361932e-01	k: 3269	n:10000
OPRD1   10000 perm   1 sec   (7216 perm/sec)   p_kst 3.269000e-01   p_cons 8.027000e-01   p_joint 5.097000e-01

Outputting figure to mutsig2_images.part000000000119/OPRD1.2_1131_10000_0.3269_0.8027_0.5097.png
                gene_name: OPRD1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 96 percent done.
OPRL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.525240e-02	ci left: 6.976675e-01	ci right 7.156120e-01	k: 7067	n:10000
KS ci ratio: 1.231710e-02	ci left: 9.044264e-01	ci right 9.157334e-01	k: 9102	n:10000
OPRL1   10000 perm   1 sec   (7245 perm/sec)   p_kst 9.102000e-01   p_cons 7.067000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000119/OPRL1.2_1125_10000_0.9102_0.7067_1.png
                gene_name: OPRL1
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
OPTC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.558222e-02	ci left: 5.383830e-01	ci right 5.579889e-01	k: 5482	n:10000
KS ci ratio: 1.617783e-02	ci left: 8.474359e-01	ci right 8.613569e-01	k: 8545	n:10000
OPTC   10000 perm   1 sec   (6788 perm/sec)   p_kst 8.545000e-01   p_cons 5.482000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000119/OPTC.2_1023_10000_0.8545_0.5482_1.png
                gene_name: OPTC
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000119
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 119 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1727>
Subject: Job 8004331: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1727>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000120> was used as the working directory.
Started at Sun Nov 11 15:10:13 2012
Results reported at Sun Nov 11 15:17:08 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000120.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000120.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 120  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000120.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    417.85 sec.
    Max Memory :      4739 MB
    Max Swap   :      7075 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
120
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 120
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 120: processing genes 10767 - 10856
Calculating significance of each gene.
Using projection method.
10767	OPTN	8.600441e-01
10768	OR10A2	1
10769	OR10A3	1.466648e-01
10770	OR10A4	1.121769e-04
10771	OR10A5	3.637992e-01
10772	OR10A6	6.835751e-01
10773	OR10A7	1
10774	OR10AD1	2.066769e-01
10775	OR10AG1	5.042282e-01
10776	OR10C1	5.238651e-02
10777	OR10G2	1.171558e-01
10778	OR10G3	1.511242e-01
10779	OR10G4	2.392572e-03
10780	OR10G7	1
10781	OR10G8	1.037655e-05
10782	OR10G9	1.220757e-02
10783	OR10H1	1
10784	OR10H2	3.862440e-01
10785	OR10H3	1.598740e-01
10786	OR10H4	6.373554e-01
10787	OR10H5	2.840088e-01
10788	OR10J1	1.539901e-01
10789	OR10J3	1.413835e-02
10790	OR10J5	1.909543e-02
10791	OR10K1	5.144467e-02
10792	OR10K2	1.860586e-01
10793	OR10P1	1.779646e-01
10794	OR10Q1	1.042192e-03
10795	OR10R2	4.382173e-04
10796	OR10S1	5.262927e-01
10797	OR10T2	1
10798	OR10V1	2.666248e-02
10799	OR10W1	5.326029e-01
10800	OR10X1	1.885531e-01
10801	OR10Z1	5.019058e-02
10802	OR11A1	4.170824e-02
10803	OR11G2	9.754202e-02
10804	OR11H1	6.439745e-01
10805	OR11H12	1
10806	OR11H4	8.505758e-02
10807	OR11H6	6.142141e-01
10808	OR11L1	7.970149e-04
10809	OR12D2	1.157749e-01
10810	OR12D3	2.346661e-02
10811	OR13A1	1
10812	OR13C2	2.279991e-01
10813	OR13C3	1
10814	OR13C4	2.618548e-02
10815	OR13C5	5.446013e-01
10816	OR13C8	1.666015e-01
10817	OR13C9	7.694133e-02
10818	OR13D1	1.762659e-01
10819	OR13F1	2.968083e-01
10820	OR13G1	4.709362e-01
10821	OR13H1	6.467742e-01
10822	OR13J1	7.385037e-01
10823	OR14A16	4.232210e-04
10824	OR14C36	3.191626e-03
10825	OR14I1	1.029456e-01
10826	OR14J1	1.908470e-02
10827	OR1A1	1
10828	OR1A2	4.401059e-01
10829	OR1B1	1.891777e-01
10830	OR1C1	8.297892e-03
10831	OR1D2	1
10832	OR1E1	2.565708e-01
10833	OR1E2	6.237018e-01
10834	OR1F1	1
10835	OR1G1	2.681364e-01
10836	OR1I1	1
10837	OR1J1	2.116624e-01
10838	OR1J2	7.523807e-01
10839	OR1J4	4.896950e-02
10840	OR1K1	1
10841	OR1L1	5.065408e-01
10842	OR1L3	2.526872e-01
10843	OR1L4	1
10844	OR1L6	6.802422e-01
10845	OR1L8	4.093205e-01
10846	OR1M1	4.865811e-01
10847	OR1N1	1
10848	OR1N2	2.196956e-01
10849	OR1Q1	4.000199e-01
10850	OR1S1	4.811476e-01
10851	OR1S2	1
10852	OR2A1	1
10853	OR2A12	1
10854	OR2A14	1
10855	OR2A2	1
10856	OR2A25	1
Done

Running MutSig 2:
Scatter job 120: processing genes 10767 - 10856
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
OR11L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.140181e-01	ci left: 9.964203e-02	ci right 1.117887e-01	k: 1056	n:10000
Cons ci ratio: 8.928483e-02	ci left: 1.543368e-01	ci right 1.688609e-01	k: 1615	n:10000
KS ci ratio: 8.178706e-02	ci left: 1.791047e-01	ci right 1.944782e-01	k: 1867	n:10000
OR11L1   10000 perm   2 sec   (6419 perm/sec)   p_kst 1.867000e-01   p_cons 1.615000e-01   p_joint 1.056000e-01

Joint ci ratio: 6.490417e-02	ci left: 1.492205e-01	ci right 1.592803e-01	k: 3084	n:20000
Cons ci ratio: 6.325163e-02	ci left: 1.559803e-01	ci right 1.662185e-01	k: 3221	n:20000
KS ci ratio: 5.804321e-02	ci left: 1.802823e-01	ci right 1.911093e-01	k: 3713	n:20000
OR11L1   20000 perm   5 sec   (3736 perm/sec)   p_kst 1.856500e-01   p_cons 1.610500e-01   p_joint 1.542000e-01

Outputting figure to mutsig2_images.part000000000120/OR11L1.13_973_20000_0.18565_0.16105_0.1542.png
                gene_name: OR11L1
               theta_stop: 0.065 
                    nperm: 20000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 1 percent done.
OR10G8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.555495e-02	ci left: 1.660256e-01	ci right 1.809651e-01	k: 1734	n:10000
Cons ci ratio: 2.985179e-02	ci left: 6.233651e-01	ci right 6.423575e-01	k: 6329	n:10000
KS ci ratio: 1.840292e-01	ci left: 3.939440e-02	ci right 4.747430e-02	k: 433	n:10000
OR10G8   10000 perm   2 sec   (6620 perm/sec)   p_kst 4.330000e-02   p_cons 6.329000e-01   p_joint 1.734000e-01

Joint ci ratio: 6.485446e-02	ci left: 1.494178e-01	ci right 1.594829e-01	k: 3088	n:20000
Cons ci ratio: 2.094615e-02	ci left: 6.297892e-01	ci right 6.431711e-01	k: 12730	n:20000
KS ci ratio: 1.298188e-01	ci left: 4.076302e-02	ci right 4.647062e-02	k: 871	n:20000
OR10G8   20000 perm   3 sec   (5968 perm/sec)   p_kst 4.355000e-02   p_cons 6.365000e-01   p_joint 1.544000e-01

Joint ci ratio: 6.536993e-02	ci left: 1.035236e-01	ci right 1.105527e-01	k: 3210	n:30000
Cons ci ratio: 1.714586e-02	ci left: 6.298570e-01	ci right 6.407834e-01	k: 19060	n:30000
KS ci ratio: 1.045841e-01	ci left: 4.238916e-02	ci right 4.709951e-02	k: 1341	n:30000
OR10G8   30000 perm   5 sec   (5705 perm/sec)   p_kst 4.470000e-02   p_cons 6.353333e-01   p_joint 1.070000e-01

Joint ci ratio: 4.761794e-02	ci left: 1.414143e-01	ci right 1.483373e-01	k: 5794	n:40000
Cons ci ratio: 1.453659e-02	ci left: 6.404131e-01	ci right 6.498158e-01	k: 25805	n:40000
KS ci ratio: 8.989991e-02	ci left: 4.333151e-02	ci right 4.743481e-02	k: 1814	n:40000
OR10G8   40000 perm   7 sec   (5465 perm/sec)   p_kst 4.535000e-02   p_cons 6.451250e-01   p_joint 1.448500e-01

Outputting figure to mutsig2_images.part000000000120/OR10G8.10_940_40000_0.04535_0.64512_0.14485.png
                gene_name: OR10G8
               theta_stop: 0.090 
                    nperm: 40000 
                     p_ks: 0.045 
        ci_ks_bounds_left: 0.043 
       ci_ks_bounds_right: 0.047 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 3 percent done.
OR10AG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.045670e-02	ci left: 3.667920e-01	ci right 3.858801e-01	k: 3763	n:10000
Cons ci ratio: 5.815626e-02	ci left: 3.032226e-01	ci right 3.214868e-01	k: 3123	n:10000
KS ci ratio: 5.106395e-02	ci left: 3.612223e-01	ci right 3.802530e-01	k: 3707	n:10000
OR10AG1   10000 perm   2 sec   (6271 perm/sec)   p_kst 3.707000e-01   p_cons 3.123000e-01   p_joint 3.763000e-01

Outputting figure to mutsig2_images.part000000000120/OR10AG1.9_909_10000_0.3707_0.3123_0.3763.png
                gene_name: OR10AG1
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 4 percent done.
OR10G9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.485854e-02	ci left: 4.231596e-01	ci right 4.426795e-01	k: 4329	n:10000
Cons ci ratio: 3.546746e-02	ci left: 5.399856e-01	ci right 5.595854e-01	k: 5498	n:10000
KS ci ratio: 6.523286e-02	ci left: 2.565673e-01	ci right 2.739696e-01	k: 2652	n:10000
OR10G9   10000 perm   2 sec   (6313 perm/sec)   p_kst 2.652000e-01   p_cons 5.498000e-01   p_joint 4.329000e-01

Outputting figure to mutsig2_images.part000000000120/OR10G9.9_938_10000_0.2652_0.5498_0.4329.png
                gene_name: OR10G9
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 6 percent done.
OR14A16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.618013e-02	ci left: 4.090055e-01	ci right 4.284419e-01	k: 4187	n:10000
Cons ci ratio: 4.243091e-02	ci left: 4.505937e-01	ci right 4.702294e-01	k: 4604	n:10000
KS ci ratio: 6.829591e-02	ci left: 2.392637e-01	ci right 2.562834e-01	k: 2477	n:10000
OR14A16   10000 perm   2 sec   (6640 perm/sec)   p_kst 2.477000e-01   p_cons 4.604000e-01   p_joint 4.187000e-01

Outputting figure to mutsig2_images.part000000000120/OR14A16.9_934_10000_0.2477_0.4604_0.4187.png
                gene_name: OR14A16
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 7 percent done.
OR1C1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.123944e-02	ci left: 9.187348e-01	ci right 9.292167e-01	k: 9241	n:10000
Cons ci ratio: 4.773191e-02	ci left: 3.930670e-01	ci right 4.123897e-01	k: 4027	n:10000
KS ci ratio: 1.823653e-02	ci left: 8.144611e-01	ci right 8.295509e-01	k: 8221	n:10000
OR1C1   10000 perm   2 sec   (6249 perm/sec)   p_kst 8.221000e-01   p_cons 4.027000e-01   p_joint 9.241000e-01

Outputting figure to mutsig2_images.part000000000120/OR1C1.9_947_10000_0.8221_0.4027_0.9241.png
                gene_name: OR1C1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 9 percent done.
OR10A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.269452e-02	ci left: 1.446231e-01	ci right 1.587804e-01	k: 1516	n:10000
Cons ci ratio: 9.995174e-02	ci left: 1.265977e-01	ci right 1.400167e-01	k: 1332	n:10000
KS ci ratio: 9.825754e-02	ci left: 1.305129e-01	ci right 1.440991e-01	k: 1372	n:10000
OR10A4   10000 perm   1 sec   (6717 perm/sec)   p_kst 1.372000e-01   p_cons 1.332000e-01   p_joint 1.516000e-01

Outputting figure to mutsig2_images.part000000000120/OR10A4.8_952_10000_0.1372_0.1332_0.1516.png
                gene_name: OR10A4
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.16 

Current progress: 10 percent done.
OR10Q1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.552514e-02	ci left: 1.661239e-01	ci right 1.810667e-01	k: 1735	n:10000
Cons ci ratio: 1.449229e-02	ci left: 8.732655e-01	ci right 8.861124e-01	k: 8798	n:10000
KS ci ratio: 1.876749e-01	ci left: 3.786599e-02	ci right 4.580373e-02	k: 417	n:10000
OR10Q1   10000 perm   2 sec   (6335 perm/sec)   p_kst 4.170000e-02   p_cons 8.798000e-01   p_joint 1.735000e-01

Joint ci ratio: 7.947324e-02	ci left: 1.041236e-01	ci right 1.127906e-01	k: 2168	n:20000
Cons ci ratio: 1.036242e-02	ci left: 8.727746e-01	ci right 8.819154e-01	k: 17548	n:20000
KS ci ratio: 1.332927e-01	ci left: 3.868094e-02	ci right 4.425337e-02	k: 828	n:20000
OR10Q1   20000 perm   3 sec   (5716 perm/sec)   p_kst 4.140000e-02   p_cons 8.774000e-01   p_joint 1.084000e-01

Joint ci ratio: 6.755823e-02	ci left: 9.748097e-02	ci right 1.043299e-01	k: 3026	n:30000
Cons ci ratio: 8.427799e-03	ci left: 8.744795e-01	ci right 8.819137e-01	k: 26347	n:30000
KS ci ratio: 1.082224e-01	ci left: 3.962807e-02	ci right 4.419451e-02	k: 1256	n:30000
OR10Q1   30000 perm   6 sec   (5293 perm/sec)   p_kst 4.186667e-02   p_cons 8.782333e-01   p_joint 1.008667e-01

Joint ci ratio: 6.182458e-02	ci left: 8.849455e-02	ci right 9.416494e-02	k: 3652	n:40000
Cons ci ratio: 7.305670e-03	ci left: 8.747780e-01	ci right 8.812170e-01	k: 35121	n:40000
KS ci ratio: 9.297355e-02	ci left: 4.056833e-02	ci right 4.454842e-02	k: 1701	n:40000
OR10Q1   40000 perm   8 sec   (5180 perm/sec)   p_kst 4.252500e-02   p_cons 8.780250e-01   p_joint 9.130000e-02

Outputting figure to mutsig2_images.part000000000120/OR10Q1.8_964_40000_0.042525_0.87803_0.0913.png
                gene_name: OR10Q1
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.043 
        ci_ks_bounds_left: 0.041 
       ci_ks_bounds_right: 0.045 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.091 
     ci_joint_bounds_left: 0.088 
    ci_joint_bounds_right: 0.094 

Current progress: 12 percent done.
OR10R2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.554127e-02	ci left: 3.231670e-01	ci right 3.417307e-01	k: 3324	n:10000
Cons ci ratio: 6.342511e-02	ci left: 2.675518e-01	ci right 2.851786e-01	k: 2763	n:10000
KS ci ratio: 6.721419e-02	ci left: 2.451943e-01	ci right 2.623493e-01	k: 2537	n:10000
OR10R2   10000 perm   2 sec   (6172 perm/sec)   p_kst 2.537000e-01   p_cons 2.763000e-01   p_joint 3.324000e-01

Outputting figure to mutsig2_images.part000000000120/OR10R2.7_1011_10000_0.2537_0.2763_0.3324.png
                gene_name: OR10R2
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 13 percent done.
OR14C36
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.706525e-02	ci left: 5.180585e-01	ci right 5.377252e-01	k: 5279	n:10000
Cons ci ratio: 5.037083e-02	ci left: 3.675878e-01	ci right 3.866839e-01	k: 3771	n:10000
KS ci ratio: 2.507590e-02	ci left: 7.005927e-01	ci right 7.184851e-01	k: 7096	n:10000
OR14C36   10000 perm   2 sec   (6656 perm/sec)   p_kst 7.096000e-01   p_cons 3.771000e-01   p_joint 5.279000e-01

Outputting figure to mutsig2_images.part000000000120/OR14C36.7_941_10000_0.7096_0.3771_0.5279.png
                gene_name: OR14C36
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 14 percent done.
OR10G4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.786111e-02	ci left: 3.917725e-01	ci right 4.110850e-01	k: 4014	n:10000
Cons ci ratio: 7.273648e-03	ci left: 9.630998e-01	ci right 9.702249e-01	k: 9668	n:10000
KS ci ratio: 8.412142e-02	ci left: 1.708424e-01	ci right 1.859454e-01	k: 1783	n:10000
OR10G4   10000 perm   2 sec   (6481 perm/sec)   p_kst 1.783000e-01   p_cons 9.668000e-01   p_joint 4.014000e-01

Outputting figure to mutsig2_images.part000000000120/OR10G4.6_938_10000_0.1783_0.9668_0.4014.png
                gene_name: OR10G4
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 16 percent done.
OR14J1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.171070e-02	ci left: 5.947369e-01	ci right 6.140022e-01	k: 6044	n:10000
Cons ci ratio: 5.726153e-02	ci left: 3.098686e-01	ci right 3.282369e-01	k: 3190	n:10000
KS ci ratio: 1.776107e-02	ci left: 8.221868e-01	ci right 8.370206e-01	k: 8297	n:10000
OR14J1   10000 perm   1 sec   (7170 perm/sec)   p_kst 8.297000e-01   p_cons 3.190000e-01   p_joint 6.044000e-01

Outputting figure to mutsig2_images.part000000000120/OR14J1.6_969_10000_0.8297_0.319_0.6044.png
                gene_name: OR14J1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 17 percent done.
OR10J3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.704001e-02	ci left: 8.337856e-01	ci right 8.482152e-01	k: 8411	n:10000
Cons ci ratio: 7.788970e-03	ci left: 9.581703e-01	ci right 9.657575e-01	k: 9621	n:10000
KS ci ratio: 4.435067e-02	ci left: 4.287437e-01	ci right 4.482921e-01	k: 4385	n:10000
OR10J3   10000 perm   1 sec   (6907 perm/sec)   p_kst 4.385000e-01   p_cons 9.621000e-01   p_joint 8.411000e-01

Outputting figure to mutsig2_images.part000000000120/OR10J3.5_992_10000_0.4385_0.9621_0.8411.png
                gene_name: OR10J3
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 19 percent done.
OR10W1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.716131e-02	ci left: 3.988435e-01	ci right 4.182098e-01	k: 4085	n:10000
Cons ci ratio: 2.338006e-02	ci left: 7.288590e-01	ci right 7.462025e-01	k: 7376	n:10000
KS ci ratio: 6.577260e-02	ci left: 2.534019e-01	ci right 2.707369e-01	k: 2620	n:10000
OR10W1   10000 perm   1 sec   (6873 perm/sec)   p_kst 2.620000e-01   p_cons 7.376000e-01   p_joint 4.085000e-01

Outputting figure to mutsig2_images.part000000000120/OR10W1.5_922_10000_0.262_0.7376_0.4085.png
                gene_name: OR10W1
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 20 percent done.
OR12D2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.503491e-02	ci left: 8.650892e-01	ci right 8.782934e-01	k: 8718	n:10000
Cons ci ratio: 3.555350e-02	ci left: 5.387836e-01	ci right 5.583881e-01	k: 5486	n:10000
KS ci ratio: 2.385736e-02	ci left: 7.208794e-01	ci right 7.383866e-01	k: 7297	n:10000
OR12D2   10000 perm   1 sec   (6940 perm/sec)   p_kst 7.297000e-01   p_cons 5.486000e-01   p_joint 8.718000e-01

Outputting figure to mutsig2_images.part000000000120/OR12D2.5_928_10000_0.7297_0.5486_0.8718.png
                gene_name: OR12D2
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 22 percent done.
OR14I1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.821285e-02	ci left: 1.575769e-01	ci right 1.722188e-01	k: 1648	n:10000
Cons ci ratio: 3.654068e-02	ci left: 5.251652e-01	ci right 5.448144e-01	k: 5350	n:10000
KS ci ratio: 1.400983e-01	ci left: 6.749259e-02	ci right 7.775805e-02	k: 725	n:10000
OR14I1   10000 perm   1 sec   (6882 perm/sec)   p_kst 7.250000e-02   p_cons 5.350000e-01   p_joint 1.648000e-01

Joint ci ratio: 6.151890e-02	ci left: 1.635334e-01	ci right 1.739631e-01	k: 3374	n:20000
Cons ci ratio: 2.567420e-02	ci left: 5.312606e-01	ci right 5.451283e-01	k: 10764	n:20000
KS ci ratio: 9.880999e-02	ci left: 6.933431e-02	ci right 7.659043e-02	k: 1458	n:20000
OR14I1   20000 perm   3 sec   (6152 perm/sec)   p_kst 7.290000e-02   p_cons 5.382000e-01   p_joint 1.687000e-01

Outputting figure to mutsig2_images.part000000000120/OR14I1.5_940_20000_0.0729_0.5382_0.1687.png
                gene_name: OR14I1
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.073 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.077 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 23 percent done.
OR10C1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.550381e-02	ci left: 4.161812e-01	ci right 4.356620e-01	k: 4259	n:10000
Cons ci ratio: 3.697613e-02	ci left: 5.192595e-01	ci right 5.389235e-01	k: 5291	n:10000
KS ci ratio: 5.546629e-02	ci left: 3.237627e-01	ci right 3.423347e-01	k: 3330	n:10000
OR10C1   10000 perm   1 sec   (6776 perm/sec)   p_kst 3.330000e-01   p_cons 5.291000e-01   p_joint 4.259000e-01

Outputting figure to mutsig2_images.part000000000120/OR10C1.4_942_10000_0.333_0.5291_0.4259.png
                gene_name: OR10C1
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 25 percent done.
OR10G7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.895237e-02	ci left: 6.375415e-01	ci right 6.563728e-01	k: 6470	n:10000
Cons ci ratio: 5.342080e-02	ci left: 3.405470e-01	ci right 3.593405e-01	k: 3499	n:10000
KS ci ratio: 2.877516e-02	ci left: 6.403578e-01	ci right 6.591549e-01	k: 6498	n:10000
OR10G7   10000 perm   1 sec   (7227 perm/sec)   p_kst 6.498000e-01   p_cons 3.499000e-01   p_joint 6.470000e-01

Outputting figure to mutsig2_images.part000000000120/OR10G7.4_940_10000_0.6498_0.3499_0.647.png
                gene_name: OR10G7
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 26 percent done.
OR10H2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.465171e-02	ci left: 1.394271e-01	ci right 1.533796e-01	k: 1463	n:10000
Cons ci ratio: 4.284305e-02	ci left: 4.458030e-01	ci right 4.654229e-01	k: 4556	n:10000
KS ci ratio: 9.747717e-02	ci left: 1.323733e-01	ci right 1.460376e-01	k: 1391	n:10000
OR10H2   10000 perm   1 sec   (7383 perm/sec)   p_kst 1.391000e-01   p_cons 4.556000e-01   p_joint 1.463000e-01

Outputting figure to mutsig2_images.part000000000120/OR10H2.4_952_10000_0.1391_0.4556_0.1463.png
                gene_name: OR10H2
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 28 percent done.
OR10J5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.820443e-02	ci left: 2.397579e-01	ci right 2.567890e-01	k: 2482	n:10000
Cons ci ratio: 7.931618e-02	ci left: 1.884559e-01	ci right 2.041214e-01	k: 1962	n:10000
KS ci ratio: 5.370375e-02	ci left: 3.381626e-01	ci right 3.569262e-01	k: 3475	n:10000
OR10J5   10000 perm   1 sec   (6931 perm/sec)   p_kst 3.475000e-01   p_cons 1.962000e-01   p_joint 2.482000e-01

Outputting figure to mutsig2_images.part000000000120/OR10J5.4_932_10000_0.3475_0.1962_0.2482.png
                gene_name: OR10J5
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 29 percent done.
OR10K1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.890004e-02	ci left: 8.035925e-01	ci right 8.190257e-01	k: 8114	n:10000
Cons ci ratio: 3.576213e-02	ci left: 5.358791e-01	ci right 5.554943e-01	k: 5457	n:10000
KS ci ratio: 1.338745e-02	ci left: 8.894412e-01	ci right 9.015273e-01	k: 8956	n:10000
OR10K1   10000 perm   1 sec   (7302 perm/sec)   p_kst 8.956000e-01   p_cons 5.457000e-01   p_joint 8.114000e-01

Outputting figure to mutsig2_images.part000000000120/OR10K1.4_944_10000_0.8956_0.5457_0.8114.png
                gene_name: OR10K1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 30 percent done.
OR10K2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.872880e-02	ci left: 1.560058e-01	ci right 1.705909e-01	k: 1632	n:10000
Cons ci ratio: 2.070530e-01	ci left: 3.100901e-02	ci right 3.826537e-02	k: 345	n:10000
KS ci ratio: 6.301137e-03	ci left: 9.716422e-01	ci right 9.778770e-01	k: 9749	n:10000
OR10K2   10000 perm   1 sec   (6772 perm/sec)   p_kst 9.749000e-01   p_cons 3.450000e-02   p_joint 1.632000e-01

Joint ci ratio: 7.146855e-02	ci left: 1.260574e-01	ci right 1.354502e-01	k: 2614	n:20000
Cons ci ratio: 1.428166e-01	ci left: 3.370219e-02	ci right 3.893373e-02	k: 725	n:20000
KS ci ratio: 4.442515e-03	ci left: 9.727410e-01	ci right 9.771195e-01	k: 19500	n:20000
OR10K2   20000 perm   3 sec   (6122 perm/sec)   p_kst 9.750000e-01   p_cons 3.625000e-02   p_joint 1.307000e-01

Joint ci ratio: 6.653608e-02	ci left: 1.002391e-01	ci right 1.071712e-01	k: 3110	n:30000
Cons ci ratio: 1.188361e-01	ci left: 3.291646e-02	ci right 3.710754e-02	k: 1049	n:30000
KS ci ratio: 3.621258e-03	ci left: 9.732389e-01	ci right 9.768016e-01	k: 29252	n:30000
OR10K2   30000 perm   5 sec   (5830 perm/sec)   p_kst 9.750667e-01   p_cons 3.496667e-02   p_joint 1.036667e-01

Joint ci ratio: 6.007592e-02	ci left: 9.330259e-02	ci right 9.910618e-02	k: 3847	n:40000
Cons ci ratio: 1.114969e-01	ci left: 2.830132e-02	ci right 3.166737e-02	k: 1198	n:40000
KS ci ratio: 3.139923e-03	ci left: 9.734226e-01	ci right 9.765079e-01	k: 39000	n:40000
OR10K2   40000 perm   7 sec   (5631 perm/sec)   p_kst 9.750000e-01   p_cons 2.995000e-02   p_joint 9.617500e-02

Joint ci ratio: 5.076137e-02	ci left: 1.038486e-01	ci right 1.092772e-01	k: 5327	n:50000
Cons ci ratio: 9.954651e-02	ci left: 2.858065e-02	ci right 3.159424e-02	k: 1503	n:50000
KS ci ratio: 2.816228e-03	ci left: 9.734499e-01	ci right 9.762146e-01	k: 48743	n:50000
OR10K2   50000 perm   9 sec   (5498 perm/sec)   p_kst 9.748600e-01   p_cons 3.006000e-02   p_joint 1.065400e-01

Outputting figure to mutsig2_images.part000000000120/OR10K2.4_941_50000_0.97486_0.03006_0.10654.png
                gene_name: OR10K2
               theta_stop: 0.100 
                    nperm: 50000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.030 
      ci_cons_bounds_left: 0.029 
     ci_cons_bounds_right: 0.032 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 32 percent done.
OR10V1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.832224e-02	ci left: 3.871924e-01	ci right 4.064677e-01	k: 3968	n:10000
Cons ci ratio: 8.321448e-02	ci left: 1.739892e-01	ci right 1.891967e-01	k: 1815	n:10000
KS ci ratio: 4.215023e-02	ci left: 4.538878e-01	ci right 4.735333e-01	k: 4637	n:10000
OR10V1   10000 perm   1 sec   (6848 perm/sec)   p_kst 4.637000e-01   p_cons 1.815000e-01   p_joint 3.968000e-01

Outputting figure to mutsig2_images.part000000000120/OR10V1.4_934_10000_0.4637_0.1815_0.3968.png
                gene_name: OR10V1
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 33 percent done.
OR10X1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.855665e-02	ci left: 4.983503e-01	ci right 5.180449e-01	k: 5082	n:10000
KS ci ratio: 1.819289e-02	ci left: 8.151724e-01	ci right 8.302391e-01	k: 8228	n:10000
OR10X1   10000 perm   1 sec   (7239 perm/sec)   p_kst 8.228000e-01   p_cons 5.082000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000120/OR10X1.4_976_10000_0.8228_0.5082_1.png
                gene_name: OR10X1
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 35 percent done.
OR10Z1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.871829e-02	ci left: 6.412631e-01	ci right 6.600491e-01	k: 6507	n:10000
Cons ci ratio: 1.291031e-02	ci left: 8.962104e-01	ci right 9.079542e-01	k: 9022	n:10000
KS ci ratio: 4.834243e-02	ci left: 3.869933e-01	ci right 4.062670e-01	k: 3966	n:10000
OR10Z1   10000 perm   1 sec   (6861 perm/sec)   p_kst 3.966000e-01   p_cons 9.022000e-01   p_joint 6.507000e-01

Outputting figure to mutsig2_images.part000000000120/OR10Z1.4_945_10000_0.3966_0.9022_0.6507.png
                gene_name: OR10Z1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 36 percent done.
OR11A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.554104e-02	ci left: 4.157825e-01	ci right 4.352610e-01	k: 4255	n:10000
Cons ci ratio: 3.441262e-02	ci left: 5.549149e-01	ci right 5.744474e-01	k: 5647	n:10000
KS ci ratio: 6.396856e-02	ci left: 2.641865e-01	ci right 2.817460e-01	k: 2729	n:10000
OR11A1   10000 perm   1 sec   (7381 perm/sec)   p_kst 2.729000e-01   p_cons 5.647000e-01   p_joint 4.255000e-01

Outputting figure to mutsig2_images.part000000000120/OR11A1.4_952_10000_0.2729_0.5647_0.4255.png
                gene_name: OR11A1
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 38 percent done.
OR12D3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.984213e-02	ci left: 4.819551e-01	ci right 5.016497e-01	k: 4918	n:10000
Cons ci ratio: 2.911097e-02	ci left: 6.350273e-01	ci right 6.538884e-01	k: 6445	n:10000
KS ci ratio: 6.881274e-02	ci left: 2.364969e-01	ci right 2.534520e-01	k: 2449	n:10000
OR12D3   10000 perm   1 sec   (7346 perm/sec)   p_kst 2.449000e-01   p_cons 6.445000e-01   p_joint 4.918000e-01

Outputting figure to mutsig2_images.part000000000120/OR12D3.4_955_10000_0.2449_0.6445_0.4918.png
                gene_name: OR12D3
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 39 percent done.
OR13C4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.265292e-02	ci left: 8.998033e-01	ci right 9.113592e-01	k: 9057	n:10000
Cons ci ratio: 3.689460e-02	ci left: 5.203605e-01	ci right 5.400219e-01	k: 5302	n:10000
KS ci ratio: 2.790793e-02	ci left: 6.542430e-01	ci right 6.728616e-01	k: 6636	n:10000
OR13C4   10000 perm   1 sec   (7381 perm/sec)   p_kst 6.636000e-01   p_cons 5.302000e-01   p_joint 9.057000e-01

Outputting figure to mutsig2_images.part000000000120/OR13C4.4_959_10000_0.6636_0.5302_0.9057.png
                gene_name: OR13C4
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 41 percent done.
OR13F1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.724115e-02	ci left: 1.968288e-01	ci right 2.127436e-01	k: 2047	n:10000
Cons ci ratio: 6.772759e-03	ci left: 9.676262e-01	ci right 9.742956e-01	k: 9711	n:10000
KS ci ratio: 1.719499e-01	ci left: 4.513859e-02	ci right 5.372632e-02	k: 493	n:10000
OR13F1   10000 perm   1 sec   (7147 perm/sec)   p_kst 4.930000e-02   p_cons 9.711000e-01   p_joint 2.047000e-01

Joint ci ratio: 6.075172e-02	ci left: 1.670398e-01	ci right 1.775557e-01	k: 3445	n:20000
Cons ci ratio: 4.451602e-03	ci left: 9.726368e-01	ci right 9.770237e-01	k: 19498	n:20000
KS ci ratio: 1.141271e-01	ci left: 5.251267e-02	ci right 5.891727e-02	k: 1113	n:20000
OR13F1   20000 perm   3 sec   (6450 perm/sec)   p_kst 5.565000e-02   p_cons 9.749000e-01   p_joint 1.722500e-01

Joint ci ratio: 5.914157e-02	ci left: 1.239428e-01	ci right 1.315295e-01	k: 3831	n:30000
Cons ci ratio: 3.598882e-03	ci left: 9.735493e-01	ci right 9.770912e-01	k: 29261	n:30000
KS ci ratio: 9.309663e-02	ci left: 5.319646e-02	ci right 5.842331e-02	k: 1673	n:30000
OR13F1   30000 perm   5 sec   (6113 perm/sec)   p_kst 5.576667e-02   p_cons 9.753667e-01   p_joint 1.277000e-01

Outputting figure to mutsig2_images.part000000000120/OR13F1.4_962_30000_0.055767_0.97537_0.1277.png
                gene_name: OR13F1
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.056 
        ci_ks_bounds_left: 0.053 
       ci_ks_bounds_right: 0.058 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 42 percent done.
OR1J4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.868797e-02	ci left: 4.966503e-01	ci right 5.163459e-01	k: 5065	n:10000
Cons ci ratio: 6.567074e-02	ci left: 2.539954e-01	ci right 2.713431e-01	k: 2626	n:10000
KS ci ratio: 2.399645e-02	ci left: 7.185570e-01	ci right 7.361104e-01	k: 7274	n:10000
OR1J4   10000 perm   1 sec   (6919 perm/sec)   p_kst 7.274000e-01   p_cons 2.626000e-01   p_joint 5.065000e-01

Outputting figure to mutsig2_images.part000000000120/OR1J4.4_945_10000_0.7274_0.2626_0.5065.png
                gene_name: OR1J4
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 43 percent done.
OR2A25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.176252e-02	ci left: 4.584803e-01	ci right 4.781381e-01	k: 4683	n:10000
Cons ci ratio: 6.518270e-02	ci left: 2.568641e-01	ci right 2.742727e-01	k: 2655	n:10000
KS ci ratio: 4.271375e-02	ci left: 4.473000e-01	ci right 4.669250e-01	k: 4571	n:10000
OR2A25   10000 perm   1 sec   (7385 perm/sec)   p_kst 4.571000e-01   p_cons 2.655000e-01   p_joint 4.683000e-01

Outputting figure to mutsig2_images.part000000000120/OR2A25.4_936_10000_0.4571_0.2655_0.4683.png
                gene_name: OR2A25
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 45 percent done.
OR10A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.168413e-02	ci left: 7.572717e-01	ci right 7.739733e-01	k: 7657	n:10000
KS ci ratio: 1.609972e-02	ci left: 8.486593e-01	ci right 8.625329e-01	k: 8557	n:10000
OR10A3   10000 perm   1 sec   (7458 perm/sec)   p_kst 8.557000e-01   p_cons 7.657000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000120/OR10A3.3_948_10000_0.8557_0.7657_1.png
                gene_name: OR10A3
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 46 percent done.
OR10G2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.769670e-02	ci left: 2.425253e-01	ci right 2.596199e-01	k: 2510	n:10000
Cons ci ratio: 1.487901e-01	ci left: 6.005239e-02	ci right 6.980294e-02	k: 648	n:10000
KS ci ratio: 1.022202e-02	ci left: 9.314385e-01	ci right 9.411054e-01	k: 9364	n:10000
OR10G2   10000 perm   1 sec   (6997 perm/sec)   p_kst 9.364000e-01   p_cons 6.480000e-02   p_joint 2.510000e-01

Joint ci ratio: 5.452635e-02	ci left: 1.997202e-01	ci right 2.109656e-01	k: 4106	n:20000
Cons ci ratio: 1.071230e-01	ci left: 5.937901e-02	ci right 6.614879e-02	k: 1254	n:20000
KS ci ratio: 7.023781e-03	ci left: 9.363115e-01	ci right 9.429599e-01	k: 18794	n:20000
OR10G2   20000 perm   3 sec   (6329 perm/sec)   p_kst 9.397000e-01   p_cons 6.270000e-02   p_joint 2.053000e-01

Joint ci ratio: 4.062665e-02	ci left: 2.319984e-01	ci right 2.416526e-01	k: 7104	n:30000
Cons ci ratio: 8.701088e-02	ci left: 6.060294e-02	ci right 6.614865e-02	k: 1900	n:30000
KS ci ratio: 5.756179e-03	ci left: 9.365045e-01	ci right 9.419434e-01	k: 28178	n:30000
OR10G2   30000 perm   5 sec   (6036 perm/sec)   p_kst 9.392667e-01   p_cons 6.333333e-02   p_joint 2.368000e-01

Outputting figure to mutsig2_images.part000000000120/OR10G2.3_936_30000_0.93927_0.063333_0.2368.png
                gene_name: OR10G2
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.063 
      ci_cons_bounds_left: 0.061 
     ci_cons_bounds_right: 0.066 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 48 percent done.
OR10G3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.273839e-01	ci left: 8.096444e-02	ci right 9.207781e-02	k: 864	n:10000
Cons ci ratio: 2.121886e-01	ci left: 2.949052e-02	ci right 3.658492e-02	k: 329	n:10000
KS ci ratio: 9.495584e-02	ci left: 1.386431e-01	ci right 1.525641e-01	k: 1455	n:10000
OR10G3   10000 perm   1 sec   (7331 perm/sec)   p_kst 1.455000e-01   p_cons 3.290000e-02   p_joint 8.640000e-02

Joint ci ratio: 1.452206e-01	ci left: 3.259226e-02	ci right 3.774403e-02	k: 702	n:20000
Cons ci ratio: 1.467418e-01	ci left: 3.191701e-02	ci right 3.701950e-02	k: 688	n:20000
KS ci ratio: 6.802228e-02	ci left: 1.375348e-01	ci right 1.472694e-01	k: 2847	n:20000
OR10G3   20000 perm   3 sec   (6514 perm/sec)   p_kst 1.423500e-01   p_cons 3.440000e-02   p_joint 3.510000e-02

Joint ci ratio: 1.236785e-01	ci left: 3.039280e-02	ci right 3.443175e-02	k: 971	n:30000
Cons ci ratio: 1.195458e-01	ci left: 3.252800e-02	ci right 3.669609e-02	k: 1037	n:30000
KS ci ratio: 5.560859e-02	ci left: 1.381342e-01	ci right 1.460686e-01	k: 4262	n:30000
OR10G3   30000 perm   5 sec   (6192 perm/sec)   p_kst 1.420667e-01   p_cons 3.456667e-02   p_joint 3.236667e-02

Joint ci ratio: 1.214693e-01	ci left: 2.383164e-02	ci right 2.693778e-02	k: 1014	n:40000
Cons ci ratio: 1.047915e-01	ci left: 3.202608e-02	ci right 3.559202e-02	k: 1351	n:40000
KS ci ratio: 4.801100e-02	ci left: 1.394096e-01	ci right 1.462923e-01	k: 5713	n:40000
OR10G3   40000 perm   7 sec   (5982 perm/sec)   p_kst 1.428250e-01   p_cons 3.377500e-02   p_joint 2.535000e-02

Joint ci ratio: 1.023150e-01	ci left: 2.705892e-02	ci right 2.999616e-02	k: 1425	n:50000
Cons ci ratio: 9.315959e-02	ci left: 3.260453e-02	ci right 3.580985e-02	k: 1709	n:50000
KS ci ratio: 4.292664e-02	ci left: 1.398630e-01	ci right 1.460185e-01	k: 7146	n:50000
OR10G3   50000 perm   9 sec   (5806 perm/sec)   p_kst 1.429200e-01   p_cons 3.418000e-02   p_joint 2.850000e-02

Joint ci ratio: 1.083050e-01	ci left: 2.020826e-02	ci right 2.253836e-02	k: 1281	n:60000
Cons ci ratio: 8.517183e-02	ci left: 3.264575e-02	ci right 3.556621e-02	k: 2045	n:60000
KS ci ratio: 3.940497e-02	ci left: 1.387863e-01	ci right 1.443817e-01	k: 8494	n:60000
OR10G3   60000 perm   11 sec   (5661 perm/sec)   p_kst 1.415667e-01   p_cons 3.408333e-02   p_joint 2.135000e-02

Joint ci ratio: 7.575409e-02	ci left: 3.544543e-02	ci right 3.825027e-02	k: 2578	n:70000
Cons ci ratio: 7.895667e-02	ci left: 3.266966e-02	ci right 3.536914e-02	k: 2380	n:70000
KS ci ratio: 3.570459e-02	ci left: 1.442709e-01	ci right 1.495298e-01	k: 10282	n:70000
OR10G3   70000 perm   13 sec   (5532 perm/sec)   p_kst 1.468857e-01   p_cons 3.400000e-02   p_joint 3.682857e-02

Outputting figure to mutsig2_images.part000000000120/OR10G3.3_945_70000_0.14689_0.034_0.036829.png
                gene_name: OR10G3
               theta_stop: 0.079 
                    nperm: 70000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.034 
      ci_cons_bounds_left: 0.033 
     ci_cons_bounds_right: 0.035 
                  p_joint: 0.037 
     ci_joint_bounds_left: 0.035 
    ci_joint_bounds_right: 0.038 

Current progress: 49 percent done.
OR10H3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.343503e-02	ci left: 4.390178e-01	ci right 4.586120e-01	k: 4488	n:10000
Cons ci ratio: 7.584265e-03	ci left: 9.601611e-01	ci right 9.675655e-01	k: 9640	n:10000
KS ci ratio: 5.409676e-02	ci left: 3.348846e-01	ci right 3.536063e-01	k: 3442	n:10000
OR10H3   10000 perm   1 sec   (7183 perm/sec)   p_kst 3.442000e-01   p_cons 9.640000e-01   p_joint 4.488000e-01

Outputting figure to mutsig2_images.part000000000120/OR10H3.3_953_10000_0.3442_0.964_0.4488.png
                gene_name: OR10H3
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 51 percent done.
OR10J1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.157110e-02	ci left: 3.566483e-01	ci right 3.756298e-01	k: 3661	n:10000
Cons ci ratio: 8.990802e-03	ci left: 9.456495e-01	ci right 9.542860e-01	k: 9501	n:10000
KS ci ratio: 8.036185e-02	ci left: 1.844192e-01	ci right 1.999605e-01	k: 1921	n:10000
OR10J1   10000 perm   1 sec   (7061 perm/sec)   p_kst 1.921000e-01   p_cons 9.501000e-01   p_joint 3.661000e-01

Outputting figure to mutsig2_images.part000000000120/OR10J1.3_967_10000_0.1921_0.9501_0.3661.png
                gene_name: OR10J1
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 52 percent done.
OR10P1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.164260e-02	ci left: 9.134796e-01	ci right 9.242749e-01	k: 9190	n:10000
Cons ci ratio: 2.065500e-02	ci left: 7.744852e-01	ci right 7.907498e-01	k: 7827	n:10000
KS ci ratio: 2.116412e-02	ci left: 7.659773e-01	ci right 7.824627e-01	k: 7743	n:10000
OR10P1   10000 perm   1 sec   (7218 perm/sec)   p_kst 7.743000e-01   p_cons 7.827000e-01   p_joint 9.190000e-01

Outputting figure to mutsig2_images.part000000000120/OR10P1.3_945_10000_0.7743_0.7827_0.919.png
                gene_name: OR10P1
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 54 percent done.
OR10S1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.822979e-03	ci left: 9.754639e-01	ci right 9.812528e-01	k: 9785	n:10000
Cons ci ratio: 5.184518e-03	ci left: 9.801637e-01	ci right 9.853496e-01	k: 9829	n:10000
KS ci ratio: 4.231157e-02	ci left: 4.519911e-01	ci right 4.716311e-01	k: 4618	n:10000
OR10S1   10000 perm   1 sec   (7325 perm/sec)   p_kst 4.618000e-01   p_cons 9.829000e-01   p_joint 9.785000e-01

Outputting figure to mutsig2_images.part000000000120/OR10S1.3_1000_10000_0.4618_0.9829_0.9785.png
                gene_name: OR10S1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 55 percent done.
OR11G2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.097639e-02	ci left: 7.691165e-01	ci right 7.855216e-01	k: 7774	n:10000
Cons ci ratio: 3.213668e-02	ci left: 5.883129e-01	ci right 6.076300e-01	k: 5980	n:10000
KS ci ratio: 4.060676e-02	ci left: 4.724627e-01	ci right 4.921476e-01	k: 4823	n:10000
OR11G2   10000 perm   1 sec   (7208 perm/sec)   p_kst 4.823000e-01   p_cons 5.980000e-01   p_joint 7.774000e-01

Outputting figure to mutsig2_images.part000000000120/OR11G2.3_1040_10000_0.4823_0.598_0.7774.png
                gene_name: OR11G2
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 57 percent done.
OR11H4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.898176e-01	ci left: 3.700694e-02	ci right 4.486335e-02	k: 408	n:10000
Cons ci ratio: 2.786829e-01	ci left: 1.669424e-02	ci right 2.219075e-02	k: 193	n:10000
KS ci ratio: 8.846994e-02	ci left: 1.567914e-01	ci right 1.714049e-01	k: 1640	n:10000
OR11H4   10000 perm   1 sec   (7303 perm/sec)   p_kst 1.640000e-01   p_cons 1.930000e-02   p_joint 4.080000e-02

Joint ci ratio: 1.313219e-01	ci left: 3.984279e-02	ci right 4.549114e-02	k: 852	n:20000
Cons ci ratio: 2.032964e-01	ci left: 1.639270e-02	ci right 2.014922e-02	k: 364	n:20000
KS ci ratio: 6.283369e-02	ci left: 1.577571e-01	ci right 1.680411e-01	k: 3257	n:20000
OR11H4   20000 perm   3 sec   (6467 perm/sec)   p_kst 1.628500e-01   p_cons 1.820000e-02   p_joint 4.260000e-02

Joint ci ratio: 1.393472e-01	ci left: 2.390657e-02	ci right 2.751941e-02	k: 770	n:30000
Cons ci ratio: 1.627664e-01	ci left: 1.742115e-02	ci right 2.053966e-02	k: 568	n:30000
KS ci ratio: 5.163864e-02	ci left: 1.569563e-01	ci right 1.653094e-01	k: 4833	n:30000
OR11H4   30000 perm   5 sec   (6151 perm/sec)   p_kst 1.611000e-01   p_cons 1.893333e-02   p_joint 2.566667e-02

Joint ci ratio: 1.399917e-01	ci left: 1.787769e-02	ci right 2.059275e-02	k: 768	n:40000
Cons ci ratio: 1.413089e-01	ci left: 1.753979e-02	ci right 2.023070e-02	k: 754	n:40000
KS ci ratio: 4.494652e-02	ci left: 1.561719e-01	ci right 1.633776e-01	k: 6390	n:40000
OR11H4   40000 perm   7 sec   (5942 perm/sec)   p_kst 1.597500e-01   p_cons 1.885000e-02   p_joint 1.920000e-02

Joint ci ratio: 1.252958e-01	ci left: 1.799576e-02	ci right 2.042051e-02	k: 959	n:50000
Cons ci ratio: 1.276898e-01	ci left: 1.731752e-02	ci right 1.969884e-02	k: 924	n:50000
KS ci ratio: 3.999533e-02	ci left: 1.579271e-01	ci right 1.643923e-01	k: 8057	n:50000
OR11H4   50000 perm   9 sec   (5778 perm/sec)   p_kst 1.611400e-01   p_cons 1.848000e-02   p_joint 1.918000e-02

Joint ci ratio: 1.232366e-01	ci left: 1.556045e-02	ci right 1.762003e-02	k: 994	n:60000
Cons ci ratio: 1.175392e-01	ci left: 1.712924e-02	ci right 1.928439e-02	k: 1091	n:60000
KS ci ratio: 3.670447e-02	ci left: 1.567935e-01	ci right 1.626727e-01	k: 9583	n:60000
OR11H4   60000 perm   11 sec   (5639 perm/sec)   p_kst 1.597167e-01   p_cons 1.818333e-02   p_joint 1.656667e-02

Joint ci ratio: 1.013025e-01	ci left: 1.988091e-02	ci right 2.201621e-02	k: 1465	n:70000
Cons ci ratio: 1.086900e-01	ci left: 1.725042e-02	ci right 1.924694e-02	k: 1276	n:70000
KS ci ratio: 3.419186e-02	ci left: 1.553760e-01	ci right 1.607952e-01	k: 11065	n:70000
OR11H4   70000 perm   13 sec   (5508 perm/sec)   p_kst 1.580714e-01   p_cons 1.822857e-02   p_joint 2.092857e-02

Joint ci ratio: 8.835720e-02	ci left: 2.295048e-02	ci right 2.508423e-02	k: 1920	n:80000
Cons ci ratio: 1.018278e-01	ci left: 1.726058e-02	ci right 1.912459e-02	k: 1454	n:80000
KS ci ratio: 3.200440e-02	ci left: 1.553794e-01	ci right 1.604455e-01	k: 12632	n:80000
OR11H4   80000 perm   15 sec   (5348 perm/sec)   p_kst 1.579000e-01   p_cons 1.817500e-02   p_joint 2.400000e-02

Joint ci ratio: 8.836051e-02	ci left: 2.045358e-02	ci right 2.235522e-02	k: 1925	n:90000
Cons ci ratio: 9.591100e-02	ci left: 1.734753e-02	ci right 1.910594e-02	k: 1639	n:90000
KS ci ratio: 3.012012e-02	ci left: 1.559980e-01	ci right 1.607796e-01	k: 14254	n:90000
OR11H4   90000 perm   17 sec   (5244 perm/sec)   p_kst 1.583778e-01   p_cons 1.821111e-02   p_joint 2.138889e-02

Outputting figure to mutsig2_images.part000000000120/OR11H4.3_978_90000_0.15838_0.018211_0.021389.png
                gene_name: OR11H4
               theta_stop: 0.096 
                    nperm: 90000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.018 
      ci_cons_bounds_left: 0.017 
     ci_cons_bounds_right: 0.019 
                  p_joint: 0.021 
     ci_joint_bounds_left: 0.020 
    ci_joint_bounds_right: 0.022 

Current progress: 58 percent done.
OR11H6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.436868e-02	ci left: 4.285442e-01	ci right 4.480917e-01	k: 4383	n:10000
Cons ci ratio: 3.185675e-02	ci left: 5.925284e-01	ci right 6.118120e-01	k: 6022	n:10000
KS ci ratio: 6.950796e-02	ci left: 2.328414e-01	ci right 2.497096e-01	k: 2412	n:10000
OR11H6   10000 perm   1 sec   (7307 perm/sec)   p_kst 2.412000e-01   p_cons 6.022000e-01   p_joint 4.383000e-01

Outputting figure to mutsig2_images.part000000000120/OR11H6.3_996_10000_0.2412_0.6022_0.4383.png
                gene_name: OR11H6
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 59 percent done.
OR13C8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.721712e-02	ci left: 6.654179e-01	ci right 6.838802e-01	k: 6747	n:10000
Cons ci ratio: 4.266216e-02	ci left: 4.478988e-01	ci right 4.675258e-01	k: 4577	n:10000
KS ci ratio: 5.061829e-02	ci left: 3.653000e-01	ci right 3.843730e-01	k: 3748	n:10000
OR13C8   10000 perm   1 sec   (7369 perm/sec)   p_kst 3.748000e-01   p_cons 4.577000e-01   p_joint 6.747000e-01

Outputting figure to mutsig2_images.part000000000120/OR13C8.3_966_10000_0.3748_0.4577_0.6747.png
                gene_name: OR13C8
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.68 

Current progress: 61 percent done.
OR13C9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.518041e-02	ci left: 3.260462e-01	ci right 3.446498e-01	k: 3353	n:10000
Cons ci ratio: 5.252887e-02	ci left: 3.481986e-01	ci right 3.670844e-01	k: 3576	n:10000
KS ci ratio: 9.487959e-02	ci left: 1.388391e-01	ci right 1.527680e-01	k: 1457	n:10000
OR13C9   10000 perm   1 sec   (7110 perm/sec)   p_kst 1.457000e-01   p_cons 3.576000e-01   p_joint 3.353000e-01

Outputting figure to mutsig2_images.part000000000120/OR13C9.3_960_10000_0.1457_0.3576_0.3353.png
                gene_name: OR13C9
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 62 percent done.
OR13D1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.143997e-02	ci left: 2.803261e-01	ci right 2.981968e-01	k: 2892	n:10000
Cons ci ratio: 5.431310e-02	ci left: 3.330967e-01	ci right 3.517951e-01	k: 3424	n:10000
KS ci ratio: 8.876129e-02	ci left: 1.559077e-01	ci right 1.704891e-01	k: 1631	n:10000
OR13D1   10000 perm   1 sec   (7119 perm/sec)   p_kst 1.631000e-01   p_cons 3.424000e-01   p_joint 2.892000e-01

Outputting figure to mutsig2_images.part000000000120/OR13D1.3_1044_10000_0.1631_0.3424_0.2892.png
                gene_name: OR13D1
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 64 percent done.
OR13G1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.208445e-01	ci left: 8.941891e-02	ci right 1.010181e-01	k: 951	n:10000
Cons ci ratio: 7.054868e-02	ci left: 2.275079e-01	ci right 2.442463e-01	k: 2358	n:10000
KS ci ratio: 1.275454e-01	ci left: 8.077027e-02	ci right 9.187210e-02	k: 862	n:10000
OR13G1   10000 perm   1 sec   (7167 perm/sec)   p_kst 8.620000e-02   p_cons 2.358000e-01   p_joint 9.510000e-02

Joint ci ratio: 8.022195e-02	ci left: 1.023554e-01	ci right 1.109593e-01	k: 2132	n:20000
Cons ci ratio: 4.955608e-02	ci left: 2.323592e-01	ci right 2.442169e-01	k: 4765	n:20000
KS ci ratio: 8.962294e-02	ci left: 8.337417e-02	ci right 9.124630e-02	k: 1745	n:20000
OR13G1   20000 perm   3 sec   (6390 perm/sec)   p_kst 8.725000e-02   p_cons 2.382500e-01   p_joint 1.066000e-01

Outputting figure to mutsig2_images.part000000000120/OR13G1.3_928_20000_0.08725_0.23825_0.1066.png
                gene_name: OR13G1
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.087 
        ci_ks_bounds_left: 0.083 
       ci_ks_bounds_right: 0.091 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 65 percent done.
OR1B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.085144e-02	ci left: 4.694658e-01	ci right 4.891463e-01	k: 4793	n:10000
KS ci ratio: 4.277403e-02	ci left: 4.466014e-01	ci right 4.662240e-01	k: 4564	n:10000
OR1B1   10000 perm   1 sec   (7209 perm/sec)   p_kst 4.564000e-01   p_cons 4.793000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000120/OR1B1.3_960_10000_0.4564_0.4793_1.png
                gene_name: OR1B1
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
OR1D2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.550197e-02	ci left: 8.579419e-01	ci right 8.714449e-01	k: 8648	n:10000
Cons ci ratio: 1.769192e-02	ci left: 8.233055e-01	ci right 8.381013e-01	k: 8308	n:10000
KS ci ratio: 3.506812e-02	ci left: 5.455956e-01	ci right 5.651722e-01	k: 5554	n:10000
OR1D2   10000 perm   1 sec   (7241 perm/sec)   p_kst 5.554000e-01   p_cons 8.308000e-01   p_joint 8.648000e-01

Outputting figure to mutsig2_images.part000000000120/OR1D2.3_942_10000_0.5554_0.8308_0.8648.png
                gene_name: OR1D2
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 68 percent done.
OR1L4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.767943e-02	ci left: 5.098532e-01	ci right 5.295353e-01	k: 5197	n:10000
Cons ci ratio: 7.825135e-02	ci left: 1.926909e-01	ci right 2.084839e-01	k: 2005	n:10000
KS ci ratio: 2.396621e-02	ci left: 7.190618e-01	ci right 7.366053e-01	k: 7279	n:10000
OR1L4   10000 perm   1 sec   (7156 perm/sec)   p_kst 7.279000e-01   p_cons 2.005000e-01   p_joint 5.197000e-01

Outputting figure to mutsig2_images.part000000000120/OR1L4.3_940_10000_0.7279_0.2005_0.5197.png
                gene_name: OR1L4
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 70 percent done.
OR1M1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.312848e-02	ci left: 5.735640e-01	ci right 5.929874e-01	k: 5833	n:10000
Cons ci ratio: 3.573329e-02	ci left: 5.362797e-01	ci right 5.558935e-01	k: 5461	n:10000
KS ci ratio: 5.425286e-02	ci left: 3.335933e-01	ci right 3.522982e-01	k: 3429	n:10000
OR1M1   10000 perm   1 sec   (7386 perm/sec)   p_kst 3.429000e-01   p_cons 5.461000e-01   p_joint 5.833000e-01

Outputting figure to mutsig2_images.part000000000120/OR1M1.3_945_10000_0.3429_0.5461_0.5833.png
                gene_name: OR1M1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 71 percent done.
OR1S1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.178706e-02	ci left: 1.791047e-01	ci right 1.944782e-01	k: 1867	n:10000
Cons ci ratio: 8.260373e-02	ci left: 1.761532e-01	ci right 1.914315e-01	k: 1837	n:10000
KS ci ratio: 7.844707e-02	ci left: 1.919029e-01	ci right 2.076724e-01	k: 1997	n:10000
OR1S1   10000 perm   1 sec   (7091 perm/sec)   p_kst 1.997000e-01   p_cons 1.837000e-01   p_joint 1.867000e-01

Outputting figure to mutsig2_images.part000000000120/OR1S1.3_981_10000_0.1997_0.1837_0.1867.png
                gene_name: OR1S1
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 72 percent done.
OR10A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.555229e-02	ci left: 2.546878e-01	ci right 2.720503e-01	k: 2633	n:10000
Cons ci ratio: 9.001671e-02	ci left: 1.521774e-01	ci right 1.666216e-01	k: 1593	n:10000
KS ci ratio: 3.400154e-02	ci left: 5.608290e-01	ci right 5.803299e-01	k: 5706	n:10000
OR10A5   10000 perm   1 sec   (7833 perm/sec)   p_kst 5.706000e-01   p_cons 1.593000e-01   p_joint 2.633000e-01

Outputting figure to mutsig2_images.part000000000120/OR10A5.2_958_10000_0.5706_0.1593_0.2633.png
                gene_name: OR10A5
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 74 percent done.
OR10A7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.445463e-02	ci left: 5.543135e-01	ci right 5.738491e-01	k: 5641	n:10000
Cons ci ratio: 3.632827e-02	ci left: 5.280685e-01	ci right 5.477094e-01	k: 5379	n:10000
KS ci ratio: 5.046744e-02	ci left: 3.666925e-01	ci right 3.857796e-01	k: 3762	n:10000
OR10A7   10000 perm   1 sec   (7609 perm/sec)   p_kst 3.762000e-01   p_cons 5.379000e-01   p_joint 5.641000e-01

Outputting figure to mutsig2_images.part000000000120/OR10A7.2_954_10000_0.3762_0.5379_0.5641.png
                gene_name: OR10A7
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 75 percent done.
OR10AD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.878481e-02	ci left: 2.986610e-01	ci right 3.168511e-01	k: 3077	n:10000
Cons ci ratio: 7.406857e-02	ci left: 2.106310e-01	ci right 2.269331e-01	k: 2187	n:10000
KS ci ratio: 4.835253e-02	ci left: 3.868937e-01	ci right 4.061666e-01	k: 3965	n:10000
OR10AD1   10000 perm   1 sec   (7602 perm/sec)   p_kst 3.965000e-01   p_cons 2.187000e-01   p_joint 3.077000e-01

Outputting figure to mutsig2_images.part000000000120/OR10AD1.2_958_10000_0.3965_0.2187_0.3077.png
                gene_name: OR10AD1
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 77 percent done.
OR10H1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.615064e-02	ci left: 6.828465e-01	ci right 7.010415e-01	k: 6920	n:10000
Cons ci ratio: 3.126828e-02	ci left: 6.014639e-01	ci right 6.206713e-01	k: 6111	n:10000
KS ci ratio: 5.091111e-02	ci left: 3.626146e-01	ci right 3.816599e-01	k: 3721	n:10000
OR10H1   10000 perm   1 sec   (7919 perm/sec)   p_kst 3.721000e-01   p_cons 6.111000e-01   p_joint 6.920000e-01

Outputting figure to mutsig2_images.part000000000120/OR10H1.2_961_10000_0.3721_0.6111_0.692.png
                gene_name: OR10H1
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 78 percent done.
OR10H5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.365594e-02	ci left: 5.658420e-01	ci right 5.853140e-01	k: 5756	n:10000
Cons ci ratio: 4.038788e-02	ci left: 4.751602e-01	ci right 4.948486e-01	k: 4850	n:10000
KS ci ratio: 3.375935e-02	ci left: 5.643380e-01	ci right 5.838188e-01	k: 5741	n:10000
OR10H5   10000 perm   1 sec   (7615 perm/sec)   p_kst 5.741000e-01   p_cons 4.850000e-01   p_joint 5.756000e-01

Outputting figure to mutsig2_images.part000000000120/OR10H5.2_951_10000_0.5741_0.485_0.5756.png
                gene_name: OR10H5
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 80 percent done.
OR10T2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.231794e-02	ci left: 2.745815e-01	ci right 2.923448e-01	k: 2834	n:10000
Cons ci ratio: 3.030947e-02	ci left: 6.162299e-01	ci right 6.352968e-01	k: 6258	n:10000
KS ci ratio: 8.268642e-02	ci left: 1.758581e-01	ci right 1.911268e-01	k: 1834	n:10000
OR10T2   10000 perm   1 sec   (7615 perm/sec)   p_kst 1.834000e-01   p_cons 6.258000e-01   p_joint 2.834000e-01

Outputting figure to mutsig2_images.part000000000120/OR10T2.2_947_10000_0.1834_0.6258_0.2834.png
                gene_name: OR10T2
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 81 percent done.
OR11H12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.038799e-02	ci left: 1.510978e-01	ci right 1.655018e-01	k: 1582	n:10000
Cons ci ratio: 1.765078e-01	ci left: 4.283864e-02	ci right 5.122777e-02	k: 469	n:10000
KS ci ratio: 3.319667e-02	ci left: 5.725610e-01	ci right 5.919910e-01	k: 5823	n:10000
OR11H12   10000 perm   1 sec   (7620 perm/sec)   p_kst 5.823000e-01   p_cons 4.690000e-02   p_joint 1.582000e-01

Joint ci ratio: 9.305140e-02	ci left: 7.769525e-02	ci right 8.532694e-02	k: 1629	n:20000
Cons ci ratio: 1.246042e-01	ci left: 4.420494e-02	ci right 5.012760e-02	k: 942	n:20000
KS ci ratio: 2.318662e-02	ci left: 5.814420e-01	ci right 5.951324e-01	k: 11766	n:20000
OR11H12   20000 perm   3 sec   (6731 perm/sec)   p_kst 5.883000e-01   p_cons 4.710000e-02   p_joint 8.145000e-02

Joint ci ratio: 7.802759e-02	ci left: 7.456415e-02	ci right 8.065128e-02	k: 2327	n:30000
Cons ci ratio: 1.024063e-01	ci left: 4.417714e-02	ci right 4.897783e-02	k: 1396	n:30000
KS ci ratio: 1.892304e-02	ci left: 5.829398e-01	ci right 5.941097e-01	k: 17656	n:30000
OR11H12   30000 perm   5 sec   (6391 perm/sec)   p_kst 5.885333e-01   p_cons 4.653333e-02   p_joint 7.756667e-02

Joint ci ratio: 7.534861e-02	ci left: 6.098211e-02	ci right 6.578152e-02	k: 2534	n:40000
Cons ci ratio: 8.852901e-02	ci left: 4.465275e-02	ci right 4.881337e-02	k: 1868	n:40000
KS ci ratio: 1.645094e-02	ci left: 5.818306e-01	ci right 5.915068e-01	k: 23467	n:40000
OR11H12   40000 perm   6 sec   (6170 perm/sec)   p_kst 5.866750e-01   p_cons 4.670000e-02   p_joint 6.335000e-02

Outputting figure to mutsig2_images.part000000000120/OR11H12.2_983_40000_0.58667_0.0467_0.06335.png
                gene_name: OR11H12
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.047 
      ci_cons_bounds_left: 0.045 
     ci_cons_bounds_right: 0.049 
                  p_joint: 0.063 
     ci_joint_bounds_left: 0.061 
    ci_joint_bounds_right: 0.066 

Current progress: 83 percent done.
OR13C2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.743559e-02	ci left: 3.960547e-01	ci right 4.154003e-01	k: 4057	n:10000
Cons ci ratio: 5.287355e-02	ci left: 3.452172e-01	ci right 3.640676e-01	k: 3546	n:10000
KS ci ratio: 4.353171e-02	ci left: 4.379204e-01	ci right 4.575101e-01	k: 4477	n:10000
OR13C2   10000 perm   1 sec   (7602 perm/sec)   p_kst 4.477000e-01   p_cons 3.546000e-01   p_joint 4.057000e-01

Outputting figure to mutsig2_images.part000000000120/OR13C2.2_960_10000_0.4477_0.3546_0.4057.png
                gene_name: OR13C2
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 84 percent done.
OR13C5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.181399e-02	ci left: 1.790063e-01	ci right 1.943767e-01	k: 1866	n:10000
Cons ci ratio: 1.132409e-01	ci left: 1.009091e-01	ci right 1.131209e-01	k: 1069	n:10000
KS ci ratio: 3.724407e-02	ci left: 5.156567e-01	ci right 5.353284e-01	k: 5255	n:10000
OR13C5   10000 perm   1 sec   (7640 perm/sec)   p_kst 5.255000e-01   p_cons 1.069000e-01   p_joint 1.866000e-01

Joint ci ratio: 5.177713e-02	ci left: 2.169495e-01	ci right 2.285313e-01	k: 4454	n:20000
Cons ci ratio: 7.982455e-02	ci left: 1.032886e-01	ci right 1.119259e-01	k: 2151	n:20000
KS ci ratio: 2.645908e-02	ci left: 5.162500e-01	ci right 5.301433e-01	k: 10464	n:20000
OR13C5   20000 perm   3 sec   (6755 perm/sec)   p_kst 5.232000e-01   p_cons 1.075500e-01   p_joint 2.227000e-01

Outputting figure to mutsig2_images.part000000000120/OR13C5.2_959_20000_0.5232_0.10755_0.2227.png
                gene_name: OR13C5
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 86 percent done.
OR1E1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.030745e-02	ci left: 9.304039e-01	ci right 9.401406e-01	k: 9354	n:10000
KS ci ratio: 1.524926e-02	ci left: 8.618211e-01	ci right 8.751635e-01	k: 8686	n:10000
OR1E1   10000 perm   1 sec   (7630 perm/sec)   p_kst 8.686000e-01   p_cons 9.354000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000120/OR1E1.2_949_10000_0.8686_0.9354_1.png
                gene_name: OR1E1
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
OR1G1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.234719e-02	ci left: 9.040153e-01	ci right 9.153447e-01	k: 9098	n:10000
KS ci ratio: 1.726249e-02	ci left: 8.302232e-01	ci right 8.447796e-01	k: 8376	n:10000
OR1G1   10000 perm   1 sec   (7538 perm/sec)   p_kst 8.376000e-01   p_cons 9.098000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000120/OR1G1.2_946_10000_0.8376_0.9098_1.png
                gene_name: OR1G1
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
OR1J1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.796083e-02	ci left: 3.907768e-01	ci right 4.100813e-01	k: 4004	n:10000
Cons ci ratio: 7.635134e-02	ci left: 2.005737e-01	ci right 2.165964e-01	k: 2085	n:10000
KS ci ratio: 3.478503e-02	ci left: 5.496035e-01	ci right 5.691619e-01	k: 5594	n:10000
OR1J1   10000 perm   1 sec   (7435 perm/sec)   p_kst 5.594000e-01   p_cons 2.085000e-01   p_joint 4.004000e-01

Outputting figure to mutsig2_images.part000000000120/OR1J1.2_972_10000_0.5594_0.2085_0.4004.png
                gene_name: OR1J1
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 90 percent done.
OR1L3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.612086e-02	ci left: 2.015594e-01	ci right 2.176102e-01	k: 2095	n:10000
Cons ci ratio: 1.030047e-01	ci left: 1.199465e-01	ci right 1.330719e-01	k: 1264	n:10000
KS ci ratio: 3.198321e-02	ci left: 5.906213e-01	ci right 6.099202e-01	k: 6003	n:10000
OR1L3   10000 perm   1 sec   (7450 perm/sec)   p_kst 6.003000e-01   p_cons 1.264000e-01   p_joint 2.095000e-01

Joint ci ratio: 5.305844e-02	ci left: 2.086795e-01	ci right 2.201037e-01	k: 4287	n:20000
Cons ci ratio: 7.288606e-02	ci left: 1.217258e-01	ci right 1.309832e-01	k: 2526	n:20000
KS ci ratio: 2.275368e-02	ci left: 5.905645e-01	ci right 6.042072e-01	k: 11948	n:20000
OR1L3   20000 perm   3 sec   (6623 perm/sec)   p_kst 5.974000e-01   p_cons 1.263000e-01   p_joint 2.143500e-01

Outputting figure to mutsig2_images.part000000000120/OR1L3.2_978_20000_0.5974_0.1263_0.21435.png
                gene_name: OR1L3
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 91 percent done.
OR1L8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.962739e-02	ci left: 6.268832e-01	ci right 6.458373e-01	k: 6364	n:10000
Cons ci ratio: 1.125544e-02	ci left: 9.185285e-01	ci right 9.290230e-01	k: 9239	n:10000
KS ci ratio: 8.748333e-02	ci left: 1.598358e-01	ci right 1.745586e-01	k: 1671	n:10000
OR1L8   10000 perm   1 sec   (7950 perm/sec)   p_kst 1.671000e-01   p_cons 9.239000e-01   p_joint 6.364000e-01

Outputting figure to mutsig2_images.part000000000120/OR1L8.2_934_10000_0.1671_0.9239_0.6364.png
                gene_name: OR1L8
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 93 percent done.
OR1N2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.191967e-02	ci left: 7.533254e-01	ci right 7.701219e-01	k: 7618	n:10000
Cons ci ratio: 3.808135e-02	ci left: 5.045512e-01	ci right 5.242404e-01	k: 5144	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
OR1N2   10000 perm   2 sec   (6450 perm/sec)   p_kst 1   p_cons 5.144000e-01   p_joint 7.618000e-01

Outputting figure to mutsig2_images.part000000000120/OR1N2.2_996_10000_1_0.5144_0.7618.png
                gene_name: OR1N2
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 94 percent done.
OR1Q1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.250506e-02	ci left: 7.435143e-01	ci right 7.605386e-01	k: 7521	n:10000
Cons ci ratio: 2.666705e-02	ci left: 6.743823e-01	ci right 6.927107e-01	k: 6836	n:10000
KS ci ratio: 2.907287e-02	ci left: 6.356307e-01	ci right 6.544847e-01	k: 6451	n:10000
OR1Q1   10000 perm   1 sec   (7890 perm/sec)   p_kst 6.451000e-01   p_cons 6.836000e-01   p_joint 7.521000e-01

Outputting figure to mutsig2_images.part000000000120/OR1Q1.2_947_10000_0.6451_0.6836_0.7521.png
                gene_name: OR1Q1
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 96 percent done.
OR1S2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.200419e-02	ci left: 7.519090e-01	ci right 7.687391e-01	k: 7604	n:10000
KS ci ratio: 3.962757e-02	ci left: 4.846536e-01	ci right 5.043496e-01	k: 4945	n:10000
OR1S2   10000 perm   1 sec   (7456 perm/sec)   p_kst 4.945000e-01   p_cons 7.604000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000120/OR1S2.2_981_10000_0.4945_0.7604_1.png
                gene_name: OR1S2
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
OR2A12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.305957e-02	ci left: 4.433082e-01	ci right 4.629191e-01	k: 4531	n:10000
Cons ci ratio: 8.435169e-02	ci left: 1.700559e-01	ci right 1.851324e-01	k: 1775	n:10000
KS ci ratio: 4.863654e-02	ci left: 3.841063e-01	ci right 4.033556e-01	k: 3937	n:10000
OR2A12   10000 perm   1 sec   (7916 perm/sec)   p_kst 3.937000e-01   p_cons 1.775000e-01   p_joint 4.531000e-01

Outputting figure to mutsig2_images.part000000000120/OR2A12.2_936_10000_0.3937_0.1775_0.4531.png
                gene_name: OR2A12
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 99 percent done.
OR2A14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.901795e-02	ci left: 2.354100e-01	ci right 2.523395e-01	k: 2438	n:10000
Cons ci ratio: 7.357380e-02	ci left: 2.128999e-01	ci right 2.292629e-01	k: 2210	n:10000
KS ci ratio: 3.740117e-02	ci left: 5.135553e-01	ci right 5.332311e-01	k: 5234	n:10000
OR2A14   10000 perm   1 sec   (7603 perm/sec)   p_kst 5.234000e-01   p_cons 2.210000e-01   p_joint 2.438000e-01

Outputting figure to mutsig2_images.part000000000120/OR2A14.2_936_10000_0.5234_0.221_0.2438.png
                gene_name: OR2A14
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000120
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 120 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1650>
Subject: Job 8004337: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1650>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000121> was used as the working directory.
Started at Sun Nov 11 15:10:42 2012
Results reported at Sun Nov 11 16:43:57 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000121.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000121.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 121  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000121.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   5740.60 sec.
    Max Memory :      4667 MB
    Max Swap   :      7079 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
121
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 121
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 121: processing genes 10857 - 10947
Calculating significance of each gene.
Using projection method.
10857	OR2A4	1
10858	OR2A42	1
10859	OR2A5	1.662505e-05
10860	OR2A7	3.098573e-01
10861	OR2AE1	1
10862	OR2AG1	1
10863	OR2AG2	2.026784e-02
10864	OR2AK2	6.142048e-05
10865	OR2AT4	3.863613e-01
10866	OR2B11	2.279950e-01
10867	OR2B2	1
10868	OR2B3	7.079713e-01
10869	OR2B6	1
10870	OR2C1	1
10871	OR2C3	1
10872	OR2D2	4.291284e-02
10873	OR2D3	1.603387e-01
10874	OR2F1	3.153500e-02
10875	OR2F2	1.210331e-02
10876	OR2G2	5.628518e-01
10877	OR2G3	5.439987e-02
10878	OR2G6	3.562611e-07
10879	OR2H1	3.950768e-01
10880	OR2H2	1
10881	OR2J2	4.161417e-02
10882	OR2J3	1.204432e-03
10883	OR2K2	5.605554e-01
10884	OR2L13	1.430921e-04
10885	OR2L2	1
10886	OR2L3	7.081277e-01
10887	OR2L8	8.346031e-03
10888	OR2M2	1
10889	OR2M3	1.815925e-03
10890	OR2M4	2.183463e-02
10891	OR2M5	1
10892	OR2M7	1.099776e-04
10893	OR2S2	7.797167e-01
10894	OR2T1	2.615085e-01
10895	OR2T10	8.714965e-03
10896	OR2T11	2.177624e-01
10897	OR2T12	1.189326e-04
10898	OR2T2	3.874391e-04
10899	OR2T27	6.638798e-01
10900	OR2T29	4.803797e-03
10901	OR2T3	3.465692e-03
10902	OR2T33	1.355208e-06
10903	OR2T34	7.533430e-01
10904	OR2T4	5.901742e-01
10905	OR2T5	5.761821e-02
10906	OR2T6	2.188810e-01
10907	OR2T8	3.528881e-05
10908	OR2V2	7.873181e-01
10909	OR2W1	5.352903e-02
10910	OR2W3	2.237979e-01
10911	OR2W5	2.879531e-01
10912	OR2Y1	1
10913	OR2Z1	1.190346e-01
10914	OR3A1	1
10915	OR3A2	5.232657e-01
10916	OR3A3	1
10917	OR4A15	2.248242e-01
10918	OR4A16	1.020907e-01
10919	OR4A47	4.675778e-01
10920	OR4A5	5.478983e-01
10921	OR4B1	1.998592e-01
10922	OR4C11	2.285262e-04
10923	OR4C12	4.962196e-02
10924	OR4C13	5.196874e-03
10925	OR4C15	2.230145e-01
10926	OR4C16	1.306732e-02
10927	OR4C3	3.416954e-01
10928	OR4C46	1
10929	OR4C6	4.663352e-01
10930	OR4D1	3.340280e-01
10931	OR4D10	1.352748e-01
10932	OR4D11	3.771207e-03
10933	OR4D2	2.207502e-02
10934	OR4D5	1.774162e-02
10935	OR4D6	4.437450e-01
10936	OR4D9	1.731169e-02
10937	OR4E2	1
10938	OR4F15	2.269482e-02
10939	OR4F17	2.467086e-01
10940	OR4F4	1
10941	OR4F5	1
10942	OR4F6	1
10943	OR4K1	3.374384e-03
10944	OR4K13	8.071455e-02
10945	OR4K14	1
10946	OR4K15	5.648256e-01
10947	OR4K17	3.150028e-01
Done

Running MutSig 2:
Scatter job 121: processing genes 10857 - 10947
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
OR2G6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.331998e-01	ci left: 7.436791e-02	ci right 8.507844e-02	k: 796	n:10000
Cons ci ratio: 5.466463e-02	ci left: 3.302166e-01	ci right 3.488769e-01	k: 3395	n:10000
KS ci ratio: 1.822799e-01	ci left: 4.015916e-02	ci right 4.830902e-02	k: 441	n:10000
OR2G6   10000 perm   2 sec   (5452 perm/sec)   p_kst 4.410000e-02   p_cons 3.395000e-01   p_joint 7.960000e-02

Joint ci ratio: 8.794992e-02	ci left: 8.636261e-02	ci right 9.435695e-02	k: 1806	n:20000
Cons ci ratio: 3.864078e-02	ci left: 3.331349e-01	ci right 3.463117e-01	k: 6794	n:20000
KS ci ratio: 1.301312e-01	ci left: 4.056926e-02	ci right 4.626445e-02	k: 867	n:20000
OR2G6   20000 perm   6 sec   (3337 perm/sec)   p_kst 4.335000e-02   p_cons 3.397000e-01   p_joint 9.030000e-02

Joint ci ratio: 8.001987e-02	ci left: 7.109524e-02	ci right 7.705422e-02	k: 2221	n:30000
Cons ci ratio: 3.184413e-02	ci left: 3.302229e-01	ci right 3.409423e-01	k: 10067	n:30000
KS ci ratio: 1.072466e-01	ci left: 4.034245e-02	ci right 4.494666e-02	k: 1278	n:30000
OR2G6   30000 perm   8 sec   (3656 perm/sec)   p_kst 4.260000e-02   p_cons 3.355667e-01   p_joint 7.403333e-02

Joint ci ratio: 7.284906e-02	ci left: 6.503575e-02	ci right 6.997726e-02	k: 2699	n:40000
Cons ci ratio: 2.757164e-02	ci left: 3.310468e-01	ci right 3.403270e-01	k: 13427	n:40000
KS ci ratio: 9.311649e-02	ci left: 4.044612e-02	ci right 4.442065e-02	k: 1696	n:40000
OR2G6   40000 perm   10 sec   (3828 perm/sec)   p_kst 4.240000e-02   p_cons 3.356750e-01   p_joint 6.747500e-02

Outputting figure to mutsig2_images.part000000000121/OR2G6.15_955_40000_0.0424_0.33568_0.067475.png
                gene_name: OR2G6
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.042 
        ci_ks_bounds_left: 0.040 
       ci_ks_bounds_right: 0.044 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.067 
     ci_joint_bounds_left: 0.065 
    ci_joint_bounds_right: 0.070 

Current progress: 1 percent done.
OR4A15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.044595e-02	ci left: 3.668915e-01	ci right 3.859806e-01	k: 3764	n:10000
Cons ci ratio: 9.453827e-02	ci left: 1.397211e-01	ci right 1.536854e-01	k: 1466	n:10000
KS ci ratio: 1.973534e-02	ci left: 7.897918e-01	ci right 8.056344e-01	k: 7978	n:10000
OR4A15   10000 perm   2 sec   (5425 perm/sec)   p_kst 7.978000e-01   p_cons 1.466000e-01   p_joint 3.764000e-01

Outputting figure to mutsig2_images.part000000000121/OR4A15.15_1038_10000_0.7978_0.1466_0.3764.png
                gene_name: OR4A15
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 3 percent done.
OR4C6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.155892e-02	ci left: 1.477618e-01	ci right 1.620398e-01	k: 1548	n:10000
Cons ci ratio: 9.316556e-02	ci left: 1.433484e-01	ci right 1.574560e-01	k: 1503	n:10000
KS ci ratio: 9.371625e-02	ci left: 1.418777e-01	ci right 1.559275e-01	k: 1488	n:10000
OR4C6   10000 perm   2 sec   (4636 perm/sec)   p_kst 1.488000e-01   p_cons 1.503000e-01   p_joint 1.548000e-01

Outputting figure to mutsig2_images.part000000000121/OR4C6.15_932_10000_0.1488_0.1503_0.1548.png
                gene_name: OR4C6
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 4 percent done.
OR2T33
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.948433e-02	ci left: 7.939508e-01	ci right 8.096730e-01	k: 8019	n:10000
Cons ci ratio: 3.804326e-02	ci left: 5.050514e-01	ci right 5.247399e-01	k: 5149	n:10000
KS ci ratio: 1.394590e-02	ci left: 8.813485e-01	ci right 8.938247e-01	k: 8877	n:10000
OR2T33   10000 perm   2 sec   (5211 perm/sec)   p_kst 8.877000e-01   p_cons 5.149000e-01   p_joint 8.019000e-01

Outputting figure to mutsig2_images.part000000000121/OR2T33.14_966_10000_0.8877_0.5149_0.8019.png
                gene_name: OR2T33
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 5 percent done.
OR2T4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.098835e-02	ci left: 1.820569e-01	ci right 1.975242e-01	k: 1897	n:10000
Cons ci ratio: 1.278700e-01	ci left: 8.038196e-02	ci right 9.146065e-02	k: 858	n:10000
KS ci ratio: 4.586852e-02	ci left: 4.122941e-01	ci right 4.317514e-01	k: 4220	n:10000
OR2T4   10000 perm   2 sec   (5135 perm/sec)   p_kst 4.220000e-01   p_cons 8.580000e-02   p_joint 1.897000e-01

Joint ci ratio: 5.594393e-02	ci left: 1.915566e-01	ci right 2.026316e-01	k: 3941	n:20000
Cons ci ratio: 9.156119e-02	ci left: 8.009344e-02	ci right 8.782802e-02	k: 1678	n:20000
KS ci ratio: 3.176461e-02	ci left: 4.253697e-01	ci right 4.391500e-01	k: 8645	n:20000
OR2T4   20000 perm   4 sec   (4651 perm/sec)   p_kst 4.322500e-01   p_cons 8.390000e-02   p_joint 1.970500e-01

Outputting figure to mutsig2_images.part000000000121/OR2T4.14_1051_20000_0.43225_0.0839_0.19705.png
                gene_name: OR2T4
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.084 
      ci_cons_bounds_left: 0.080 
     ci_cons_bounds_right: 0.088 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 7 percent done.
OR2L13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.168413e-02	ci left: 7.572717e-01	ci right 7.739733e-01	k: 7657	n:10000
Cons ci ratio: 5.073728e-02	ci left: 3.642059e-01	ci right 3.832677e-01	k: 3737	n:10000
KS ci ratio: 7.021289e-03	ci left: 9.654135e-01	ci right 9.723098e-01	k: 9690	n:10000
OR2L13   10000 perm   2 sec   (5697 perm/sec)   p_kst 9.690000e-01   p_cons 3.737000e-01   p_joint 7.657000e-01

Outputting figure to mutsig2_images.part000000000121/OR2L13.11_943_10000_0.969_0.3737_0.7657.png
                gene_name: OR2L13
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 8 percent done.
OR2M2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.541838e-01	ci left: 9.958933e-03	ci right 1.433217e-02	k: 120	n:10000
Cons ci ratio: 4.506925e-02	ci left: 4.208664e-01	ci right 4.403740e-01	k: 4306	n:10000
KS ci ratio: 6.264461e-01	ci left: 2.690467e-03	ci right 5.212103e-03	k: 38	n:10000
OR2M2   10000 perm   2 sec   (6182 perm/sec)   p_kst 3.800000e-03   p_cons 4.306000e-01   p_joint 1.200000e-02

Joint ci ratio: 2.139961e-01	ci left: 1.473272e-02	ci right 1.830984e-02	k: 329	n:20000
Cons ci ratio: 3.219870e-02	ci left: 4.187339e-01	ci right 4.324878e-01	k: 8512	n:20000
KS ci ratio: 4.193426e-01	ci left: 3.440841e-03	ci right 5.307780e-03	k: 86	n:20000
OR2M2   20000 perm   4 sec   (5531 perm/sec)   p_kst 4.300000e-03   p_cons 4.256000e-01   p_joint 1.645000e-02

Joint ci ratio: 1.539028e-01	ci left: 1.953562e-02	ci right 2.282469e-02	k: 634	n:30000
Cons ci ratio: 2.633757e-02	ci left: 4.191307e-01	ci right 4.303505e-01	k: 12742	n:30000
KS ci ratio: 3.391472e-01	ci left: 3.682707e-03	ci right 5.215703e-03	k: 132	n:30000
OR2M2   30000 perm   6 sec   (5308 perm/sec)   p_kst 4.400000e-03   p_cons 4.247333e-01   p_joint 2.113333e-02

Joint ci ratio: 1.173801e-01	ci left: 2.553066e-02	ci right 2.873849e-02	k: 1084	n:40000
Cons ci ratio: 2.274916e-02	ci left: 4.211720e-01	ci right 4.308887e-01	k: 17041	n:40000
KS ci ratio: 2.923346e-01	ci left: 3.821418e-03	ci right 5.152096e-03	k: 178	n:40000
OR2M2   40000 perm   8 sec   (5132 perm/sec)   p_kst 4.450000e-03   p_cons 4.260250e-01   p_joint 2.710000e-02

Joint ci ratio: 1.086348e-01	ci left: 2.399958e-02	ci right 2.677590e-02	k: 1268	n:50000
Cons ci ratio: 2.032126e-02	ci left: 4.223192e-01	ci right 4.310094e-01	k: 21333	n:50000
KS ci ratio: 2.745683e-01	ci left: 3.502960e-03	ci right 4.635813e-03	k: 202	n:50000
OR2M2   50000 perm   10 sec   (4992 perm/sec)   p_kst 4.040000e-03   p_cons 4.266600e-01   p_joint 2.536000e-02

Joint ci ratio: 1.426252e-01	ci left: 1.154592e-02	ci right 1.333504e-02	k: 745	n:60000
Cons ci ratio: 1.828569e-02	ci left: 4.297462e-01	ci right 4.376936e-01	k: 26023	n:60000
KS ci ratio: 2.519997e-01	ci left: 3.510737e-03	ci right 4.538152e-03	k: 240	n:60000
OR2M2   60000 perm   12 sec   (4873 perm/sec)   p_kst 4.000000e-03   p_cons 4.337167e-01   p_joint 1.241667e-02

Joint ci ratio: 1.546067e-01	ci left: 8.396074e-03	ci right 9.816494e-03	k: 636	n:70000
Cons ci ratio: 1.660162e-02	ci left: 4.396580e-01	ci right 4.470324e-01	k: 31034	n:70000
KS ci ratio: 2.325467e-01	ci left: 3.572844e-03	ci right 4.526133e-03	k: 282	n:70000
OR2M2   70000 perm   15 sec   (4771 perm/sec)   p_kst 4.028571e-03   p_cons 4.433429e-01   p_joint 9.085714e-03

Joint ci ratio: 1.207606e-01	ci left: 1.221439e-02	ci right 1.379622e-02	k: 1039	n:80000
Cons ci ratio: 1.555086e-02	ci left: 4.392165e-01	ci right 4.461127e-01	k: 35413	n:80000
KS ci ratio: 2.156704e-01	ci left: 3.669020e-03	ci right 4.567529e-03	k: 328	n:80000
OR2M2   80000 perm   17 sec   (4669 perm/sec)   p_kst 4.100000e-03   p_cons 4.426625e-01   p_joint 1.298750e-02

Joint ci ratio: 1.212626e-01	ci left: 1.078132e-02	ci right 1.218376e-02	k: 1032	n:90000
Cons ci ratio: 1.468189e-02	ci left: 4.387296e-01	ci right 4.452297e-01	k: 39778	n:90000
KS ci ratio: 2.050468e-01	ci left: 3.629755e-03	ci right 4.469374e-03	k: 363	n:90000
OR2M2   90000 perm   20 sec   (4567 perm/sec)   p_kst 4.033333e-03   p_cons 4.419778e-01   p_joint 1.146667e-02

Joint ci ratio: 1.251859e-01	ci left: 9.101794e-03	ci right 1.032690e-02	k: 970	n:100000
Cons ci ratio: 1.393069e-02	ci left: 4.388187e-01	ci right 4.449846e-01	k: 44190	n:100000
KS ci ratio: 1.943906e-01	ci left: 3.656293e-03	ci right 4.452897e-03	k: 404	n:100000
OR2M2   100000 perm   22 sec   (4482 perm/sec)   p_kst 4.040000e-03   p_cons 4.419000e-01   p_joint 9.700000e-03

Joint ci ratio: 1.040595e-01	ci left: 1.207317e-02	ci right 1.340725e-02	k: 1400	n:110000
Cons ci ratio: 1.329613e-02	ci left: 4.384536e-01	ci right 4.443314e-01	k: 48553	n:110000
KS ci ratio: 1.835938e-01	ci left: 3.748311e-03	ci right 4.514561e-03	k: 453	n:110000
OR2M2   110000 perm   25 sec   (4400 perm/sec)   p_kst 4.118182e-03   p_cons 4.413909e-01   p_joint 1.272727e-02

Joint ci ratio: 1.025349e-01	ci left: 1.141595e-02	ci right 1.265780e-02	k: 1443	n:120000
Cons ci ratio: 1.274191e-02	ci left: 4.381215e-01	ci right 4.437481e-01	k: 52912	n:120000
KS ci ratio: 1.758264e-01	ci left: 3.762256e-03	ci right 4.495360e-03	k: 494	n:120000
OR2M2   120000 perm   28 sec   (4323 perm/sec)   p_kst 4.116667e-03   p_cons 4.409333e-01   p_joint 1.202500e-02

Joint ci ratio: 9.510393e-02	ci left: 1.228611e-02	ci right 1.352037e-02	k: 1676	n:130000
Cons ci ratio: 1.223791e-02	ci left: 4.383984e-01	ci right 4.438042e-01	k: 57343	n:130000
KS ci ratio: 1.684953e-01	ci left: 3.796739e-03	ci right 4.502584e-03	k: 538	n:130000
OR2M2   130000 perm   31 sec   (4243 perm/sec)   p_kst 4.138462e-03   p_cons 4.411000e-01   p_joint 1.289231e-02

Joint ci ratio: 9.325309e-02	ci left: 1.188269e-02	ci right 1.305192e-02	k: 1744	n:140000
Cons ci ratio: 1.180694e-02	ci left: 4.379043e-01	ci right 4.431124e-01	k: 61671	n:140000
KS ci ratio: 1.634243e-01	ci left: 3.758309e-03	ci right 4.433914e-03	k: 572	n:140000
OR2M2   140000 perm   34 sec   (4171 perm/sec)   p_kst 4.085714e-03   p_cons 4.405071e-01   p_joint 1.245714e-02

Joint ci ratio: 9.753725e-02	ci left: 1.013343e-02	ci right 1.117895e-02	k: 1597	n:150000
Cons ci ratio: 1.139952e-02	ci left: 4.382987e-01	ci right 4.433303e-01	k: 66122	n:150000
KS ci ratio: 1.562217e-01	ci left: 3.853376e-03	ci right 4.512683e-03	k: 626	n:150000
OR2M2   150000 perm   37 sec   (4097 perm/sec)   p_kst 4.173333e-03   p_cons 4.408133e-01   p_joint 1.064667e-02

Joint ci ratio: 9.747771e-02	ci left: 9.518235e-03	ci right 1.049964e-02	k: 1600	n:160000
Cons ci ratio: 1.103448e-02	ci left: 4.385152e-01	ci right 4.433870e-01	k: 70552	n:160000
KS ci ratio: 1.512383e-01	ci left: 3.864946e-03	ci right 4.503227e-03	k: 668	n:160000
OR2M2   160000 perm   40 sec   (4031 perm/sec)   p_kst 4.175000e-03   p_cons 4.409500e-01   p_joint 1.000000e-02

Joint ci ratio: 9.825286e-02	ci left: 8.820461e-03	ci right 9.737567e-03	k: 1576	n:170000
Cons ci ratio: 1.031800e-02	ci left: 4.568054e-01	ci right 4.615490e-01	k: 78060	n:170000
KS ci ratio: 1.469109e-01	ci left: 3.864114e-03	ci right 4.482395e-03	k: 708	n:170000
OR2M2   170000 perm   43 sec   (3969 perm/sec)   p_kst 4.164706e-03   p_cons 4.591765e-01   p_joint 9.270588e-03

Joint ci ratio: 9.805911e-02	ci left: 8.368274e-03	ci right 9.236546e-03	k: 1583	n:180000
Cons ci ratio: 1.003310e-02	ci left: 4.565848e-01	ci right 4.611943e-01	k: 82600	n:180000
KS ci ratio: 1.429350e-01	ci left: 3.863606e-03	ci right 4.463648e-03	k: 748	n:180000
OR2M2   180000 perm   46 sec   (3906 perm/sec)   p_kst 4.155556e-03   p_cons 4.588889e-01   p_joint 8.794444e-03

Joint ci ratio: 9.951753e-02	ci left: 7.696715e-03	ci right 8.507875e-03	k: 1538	n:190000
Cons ci ratio: 9.769950e-03	ci left: 4.564206e-01	ci right 4.609069e-01	k: 87146	n:190000
KS ci ratio: 1.394429e-01	ci left: 3.853192e-03	ci right 4.435781e-03	k: 786	n:190000
OR2M2   190000 perm   49 sec   (3844 perm/sec)   p_kst 4.136842e-03   p_cons 4.586632e-01   p_joint 8.094737e-03

Joint ci ratio: 9.066598e-02	ci left: 8.839960e-03	ci right 9.684355e-03	k: 1851	n:200000
Cons ci ratio: 9.520812e-03	ci left: 4.565693e-01	ci right 4.609419e-01	k: 91751	n:200000
KS ci ratio: 1.356182e-01	ci left: 3.877794e-03	ci right 4.446725e-03	k: 831	n:200000
OR2M2   200000 perm   53 sec   (3786 perm/sec)   p_kst 4.155000e-03   p_cons 4.587550e-01   p_joint 9.255000e-03

Joint ci ratio: 7.442495e-02	ci left: 1.255260e-02	ci right 1.352758e-02	k: 2737	n:210000
Cons ci ratio: 9.288296e-03	ci left: 4.567860e-01	ci right 4.610532e-01	k: 96373	n:210000
KS ci ratio: 1.324717e-01	ci left: 3.877226e-03	ci right 4.431836e-03	k: 871	n:210000
OR2M2   210000 perm   56 sec   (3731 perm/sec)   p_kst 4.147619e-03   p_cons 4.589190e-01   p_joint 1.303333e-02

Joint ci ratio: 7.338263e-02	ci left: 1.233443e-02	ci right 1.327847e-02	k: 2816	n:220000
Cons ci ratio: 9.078086e-03	ci left: 4.566524e-01	ci right 4.608214e-01	k: 100922	n:220000
KS ci ratio: 1.299645e-01	ci left: 3.850457e-03	ci right 4.390009e-03	k: 905	n:220000
OR2M2   220000 perm   60 sec   (3677 perm/sec)   p_kst 4.113636e-03   p_cons 4.587364e-01   p_joint 1.280000e-02

Joint ci ratio: 6.976953e-02	ci left: 1.306652e-02	ci right 1.401536e-02	k: 3113	n:230000
Cons ci ratio: 8.881140e-03	ci left: 4.565533e-01	ci right 4.606304e-01	k: 105476	n:230000
KS ci ratio: 1.270528e-01	ci left: 3.859786e-03	ci right 4.387614e-03	k: 947	n:230000
OR2M2   230000 perm   64 sec   (3621 perm/sec)   p_kst 4.117391e-03   p_cons 4.585913e-01   p_joint 1.353478e-02

Joint ci ratio: 6.739577e-02	ci left: 1.343130e-02	ci right 1.437216e-02	k: 3335	n:240000
Cons ci ratio: 8.695676e-03	ci left: 4.565091e-01	ci right 4.605002e-01	k: 110041	n:240000
KS ci ratio: 1.239517e-01	ci left: 3.892687e-03	ci right 4.411067e-03	k: 995	n:240000
OR2M2   240000 perm   67 sec   (3567 perm/sec)   p_kst 4.145833e-03   p_cons 4.585042e-01   p_joint 1.389583e-02

Joint ci ratio: 6.696857e-02	ci left: 1.306701e-02	ci right 1.397632e-02	k: 3379	n:250000
Cons ci ratio: 8.518209e-03	ci left: 4.566533e-01	ci right 4.605637e-01	k: 114652	n:250000
KS ci ratio: 1.214768e-01	ci left: 3.895945e-03	ci right 4.403656e-03	k: 1036	n:250000
OR2M2   250000 perm   71 sec   (3517 perm/sec)   p_kst 4.144000e-03   p_cons 4.586080e-01   p_joint 1.351600e-02

Joint ci ratio: 6.324260e-02	ci left: 1.410080e-02	ci right 1.502545e-02	k: 3785	n:260000
Cons ci ratio: 8.354221e-03	ci left: 4.566063e-01	ci right 4.604407e-01	k: 119216	n:260000
KS ci ratio: 1.188679e-01	ci left: 3.917709e-03	ci right 4.416521e-03	k: 1082	n:260000
OR2M2   260000 perm   75 sec   (3467 perm/sec)   p_kst 4.161538e-03   p_cons 4.585231e-01   p_joint 1.455769e-02

Joint ci ratio: 6.233135e-02	ci left: 1.398682e-02	ci right 1.489031e-02	k: 3897	n:270000
Cons ci ratio: 8.200272e-03	ci left: 4.565081e-01	ci right 4.602706e-01	k: 123765	n:270000
KS ci ratio: 1.170465e-01	ci left: 3.894816e-03	ci right 4.382589e-03	k: 1116	n:270000
OR2M2   270000 perm   79 sec   (3418 perm/sec)   p_kst 4.133333e-03   p_cons 4.583889e-01   p_joint 1.443333e-02

Joint ci ratio: 6.336936e-02	ci left: 1.305471e-02	ci right 1.391254e-02	k: 3774	n:280000
Cons ci ratio: 8.047813e-03	ci left: 4.568316e-01	ci right 4.605264e-01	k: 128430	n:280000
KS ci ratio: 1.150557e-01	ci left: 3.890958e-03	ci right 4.369396e-03	k: 1155	n:280000
OR2M2   280000 perm   83 sec   (3372 perm/sec)   p_kst 4.125000e-03   p_cons 4.586786e-01   p_joint 1.347857e-02

Joint ci ratio: 6.231424e-02	ci left: 1.304238e-02	ci right 1.388462e-02	k: 3903	n:290000
Cons ci ratio: 7.908324e-03	ci left: 4.568334e-01	ci right 4.604640e-01	k: 133008	n:290000
KS ci ratio: 1.132106e-01	ci left: 3.884079e-03	ci right 4.353502e-03	k: 1193	n:290000
OR2M2   290000 perm   87 sec   (3327 perm/sec)   p_kst 4.113793e-03   p_cons 4.586483e-01   p_joint 1.345862e-02

Joint ci ratio: 6.195167e-02	ci left: 1.276181e-02	ci right 1.358096e-02	k: 3950	n:300000
Cons ci ratio: 7.779396e-03	ci left: 4.566091e-01	ci right 4.601784e-01	k: 137518	n:300000
KS ci ratio: 1.113609e-01	ci left: 3.884199e-03	ci right 4.345462e-03	k: 1233	n:300000
OR2M2   300000 perm   91 sec   (3283 perm/sec)   p_kst 4.110000e-03   p_cons 4.583933e-01   p_joint 1.316667e-02

Joint ci ratio: 6.107857e-02	ci left: 1.271222e-02	ci right 1.351628e-02	k: 4064	n:310000
Cons ci ratio: 7.654483e-03	ci left: 4.565351e-01	ci right 4.600463e-01	k: 142070	n:310000
KS ci ratio: 1.097721e-01	ci left: 3.871818e-03	ci right 4.324627e-03	k: 1269	n:310000
OR2M2   310000 perm   96 sec   (3239 perm/sec)   p_kst 4.093548e-03   p_cons 4.582903e-01   p_joint 1.310968e-02

Joint ci ratio: 6.046901e-02	ci left: 1.257037e-02	ci right 1.335724e-02	k: 4147	n:320000
Cons ci ratio: 7.539052e-03	ci left: 4.562257e-01	ci right 4.596813e-01	k: 146545	n:320000
KS ci ratio: 1.077125e-01	ci left: 3.899787e-03	ci right 4.346767e-03	k: 1318	n:320000
OR2M2   320000 perm   100 sec   (3198 perm/sec)   p_kst 4.118750e-03   p_cons 4.579531e-01   p_joint 1.295938e-02

Joint ci ratio: 5.962791e-02	ci left: 1.254165e-02	ci right 1.331543e-02	k: 4265	n:330000
Cons ci ratio: 7.427234e-03	ci left: 4.560324e-01	ci right 4.594350e-01	k: 151052	n:330000
KS ci ratio: 1.061549e-01	ci left: 3.896632e-03	ci right 4.336388e-03	k: 1357	n:330000
OR2M2   330000 perm   104 sec   (3158 perm/sec)   p_kst 4.112121e-03   p_cons 4.577333e-01   p_joint 1.292424e-02

Joint ci ratio: 6.103843e-02	ci left: 1.161931e-02	ci right 1.235374e-02	k: 4074	n:340000
Cons ci ratio: 7.315606e-03	ci left: 4.561654e-01	ci right 4.595177e-01	k: 155666	n:340000
KS ci ratio: 1.045503e-01	ci left: 3.902300e-03	ci right 4.335630e-03	k: 1399	n:340000
OR2M2   340000 perm   109 sec   (3118 perm/sec)   p_kst 4.114706e-03   p_cons 4.578412e-01   p_joint 1.198235e-02

Joint ci ratio: 6.054737e-02	ci left: 1.147583e-02	ci right 1.219515e-02	k: 4141	n:350000
Cons ci ratio: 7.208201e-03	ci left: 4.563369e-01	ci right 4.596410e-01	k: 160296	n:350000
KS ci ratio: 1.027306e-01	ci left: 3.929963e-03	ci right 4.358311e-03	k: 1449	n:350000
OR2M2   350000 perm   114 sec   (3080 perm/sec)   p_kst 4.140000e-03   p_cons 4.579886e-01   p_joint 1.183143e-02

Joint ci ratio: 6.008954e-02	ci left: 1.133213e-02	ci right 1.203688e-02	k: 4205	n:360000
Cons ci ratio: 7.105112e-03	ci left: 4.565186e-01	ci right 4.597765e-01	k: 164933	n:360000
KS ci ratio: 1.013767e-01	ci left: 3.926365e-03	ci right 4.348345e-03	k: 1488	n:360000
OR2M2   360000 perm   118 sec   (3044 perm/sec)   p_kst 4.133333e-03   p_cons 4.581472e-01   p_joint 1.168056e-02

Joint ci ratio: 5.617057e-02	ci left: 1.262682e-02	ci right 1.335922e-02	k: 4806	n:370000
Cons ci ratio: 7.011091e-03	ci left: 4.563531e-01	ci right 4.595665e-01	k: 169445	n:370000
KS ci ratio: 1.000420e-01	ci left: 3.925632e-03	ci right 4.341652e-03	k: 1528	n:370000
OR2M2   370000 perm   123 sec   (3006 perm/sec)   p_kst 4.129730e-03   p_cons 4.579595e-01   p_joint 1.298919e-02

Joint ci ratio: 5.589831e-02	ci left: 1.241904e-02	ci right 1.313578e-02	k: 4854	n:380000
Cons ci ratio: 6.914618e-03	ci left: 4.566332e-01	ci right 4.598042e-01	k: 174123	n:380000
KS ci ratio: 9.844423e-02	ci left: 3.950642e-03	ci right 4.362239e-03	k: 1578	n:380000
OR2M2   380000 perm   128 sec   (2971 perm/sec)   p_kst 4.152632e-03   p_cons 4.582184e-01   p_joint 1.277368e-02

Outputting figure to mutsig2_images.part000000000121/OR2M2.11_1046_380000_0.0041526_0.45822_0.012774.png
                gene_name: OR2M2
               theta_stop: 0.098 
                    nperm: 380000 
                     p_ks: 0.0042 
        ci_ks_bounds_left: 0.0040 
       ci_ks_bounds_right: 0.0044 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.013 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.013 

Current progress: 9 percent done.
OR2G3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.269208e-02	ci left: 7.403801e-01	ci right 7.574747e-01	k: 7490	n:10000
Cons ci ratio: 4.831215e-02	ci left: 3.872920e-01	ci right 4.065681e-01	k: 3969	n:10000
KS ci ratio: 1.319350e-02	ci left: 8.922095e-01	ci right 9.041574e-01	k: 8983	n:10000
OR2G3   10000 perm   2 sec   (5580 perm/sec)   p_kst 8.983000e-01   p_cons 3.969000e-01   p_joint 7.490000e-01

Outputting figure to mutsig2_images.part000000000121/OR2G3.10_933_10000_0.8983_0.3969_0.749.png
                gene_name: OR2G3
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 11 percent done.
OR4K1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.763285e-02	ci left: 3.940629e-01	ci right 4.133932e-01	k: 4037	n:10000
Cons ci ratio: 9.663204e-02	ci left: 1.344301e-01	ci right 1.481796e-01	k: 1412	n:10000
KS ci ratio: 2.206455e-02	ci left: 7.508973e-01	ci right 7.677513e-01	k: 7594	n:10000
OR4K1   10000 perm   2 sec   (5512 perm/sec)   p_kst 7.594000e-01   p_cons 1.412000e-01   p_joint 4.037000e-01

Outputting figure to mutsig2_images.part000000000121/OR4K1.9_940_10000_0.7594_0.1412_0.4037.png
                gene_name: OR4K1
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 12 percent done.
OR2A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.568101e-02	ci left: 4.142874e-01	ci right 4.337569e-01	k: 4240	n:10000
Cons ci ratio: 6.540060e-02	ci left: 2.555781e-01	ci right 2.729595e-01	k: 2642	n:10000
KS ci ratio: 7.277146e-02	ci left: 2.166492e-01	ci right 2.331114e-01	k: 2248	n:10000
OR2A5   10000 perm   2 sec   (5580 perm/sec)   p_kst 2.248000e-01   p_cons 2.642000e-01   p_joint 4.240000e-01

Outputting figure to mutsig2_images.part000000000121/OR2A5.8_939_10000_0.2248_0.2642_0.424.png
                gene_name: OR2A5
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 13 percent done.
OR2AK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.156145e-02	ci left: 2.224724e-01	ci right 2.390847e-01	k: 2307	n:10000
Cons ci ratio: 7.052912e-02	ci left: 2.276066e-01	ci right 2.443474e-01	k: 2359	n:10000
KS ci ratio: 6.572163e-02	ci left: 2.536986e-01	ci right 2.710400e-01	k: 2623	n:10000
OR2AK2   10000 perm   2 sec   (5506 perm/sec)   p_kst 2.623000e-01   p_cons 2.359000e-01   p_joint 2.307000e-01

Outputting figure to mutsig2_images.part000000000121/OR2AK2.8_1011_10000_0.2623_0.2359_0.2307.png
                gene_name: OR2AK2
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 15 percent done.
OR2M3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.748407e-02	ci left: 6.610882e-01	ci right 6.796124e-01	k: 6704	n:10000
Cons ci ratio: 1.492043e-02	ci left: 8.668259e-01	ci right 8.799557e-01	k: 8735	n:10000
KS ci ratio: 4.700555e-02	ci left: 4.004372e-01	ci right 4.198151e-01	k: 4101	n:10000
OR2M3   10000 perm   2 sec   (5615 perm/sec)   p_kst 4.101000e-01   p_cons 8.735000e-01   p_joint 6.704000e-01

Outputting figure to mutsig2_images.part000000000121/OR2M3.8_942_10000_0.4101_0.8735_0.6704.png
                gene_name: OR2M3
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 16 percent done.
OR2M7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.575280e-02	ci left: 8.540644e-01	ci right 8.677246e-01	k: 8610	n:10000
Cons ci ratio: 1.189849e-02	ci left: 9.100826e-01	ci right 9.210739e-01	k: 9157	n:10000
KS ci ratio: 3.520321e-02	ci left: 5.436920e-01	ci right 5.632768e-01	k: 5535	n:10000
OR2M7   10000 perm   2 sec   (5733 perm/sec)   p_kst 5.535000e-01   p_cons 9.157000e-01   p_joint 8.610000e-01

Outputting figure to mutsig2_images.part000000000121/OR2M7.8_942_10000_0.5535_0.9157_0.861.png
                gene_name: OR2M7
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 17 percent done.
OR2T1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.450408e-02	ci left: 4.270484e-01	ci right 4.465885e-01	k: 4368	n:10000
Cons ci ratio: 1.905420e-02	ci left: 8.010545e-01	ci right 8.165651e-01	k: 8089	n:10000
KS ci ratio: 6.285915e-02	ci left: 2.711159e-01	ci right 2.888125e-01	k: 2799	n:10000
OR2T1   10000 perm   2 sec   (5206 perm/sec)   p_kst 2.799000e-01   p_cons 8.089000e-01   p_joint 4.368000e-01

Outputting figure to mutsig2_images.part000000000121/OR2T1.8_1113_10000_0.2799_0.8089_0.4368.png
                gene_name: OR2T1
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 19 percent done.
OR2T12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.303352e-02	ci left: 4.436076e-01	ci right 4.632196e-01	k: 4534	n:10000
Cons ci ratio: 7.849617e-02	ci left: 1.917059e-01	ci right 2.074695e-01	k: 1995	n:10000
KS ci ratio: 3.622611e-02	ci left: 5.294702e-01	ci right 5.491069e-01	k: 5393	n:10000
OR2T12   10000 perm   2 sec   (5311 perm/sec)   p_kst 5.393000e-01   p_cons 1.995000e-01   p_joint 4.534000e-01

Outputting figure to mutsig2_images.part000000000121/OR2T12.8_966_10000_0.5393_0.1995_0.4534.png
                gene_name: OR2T12
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 20 percent done.
OR2T8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.388648e-01	ci left: 6.865367e-02	ci right 7.899624e-02	k: 737	n:10000
Cons ci ratio: 1.621688e-01	ci left: 5.070795e-02	ci right 5.975335e-02	k: 551	n:10000
KS ci ratio: 9.926549e-02	ci left: 1.281636e-01	ci right 1.416499e-01	k: 1348	n:10000
OR2T8   10000 perm   2 sec   (5979 perm/sec)   p_kst 1.348000e-01   p_cons 5.510000e-02   p_joint 7.370000e-02

Joint ci ratio: 1.357013e-01	ci left: 3.732625e-02	ci right 4.280850e-02	k: 800	n:20000
Cons ci ratio: 1.086552e-01	ci left: 5.777083e-02	ci right 6.445747e-02	k: 1221	n:20000
KS ci ratio: 6.800836e-02	ci left: 1.375841e-01	ci right 1.473201e-01	k: 2848	n:20000
OR2T8   20000 perm   4 sec   (5364 perm/sec)   p_kst 1.424000e-01   p_cons 6.105000e-02   p_joint 4.000000e-02

Joint ci ratio: 1.015327e-01	ci left: 4.492514e-02	ci right 4.976301e-02	k: 1419	n:30000
Cons ci ratio: 9.306719e-02	ci left: 5.322906e-02	ci right 5.845737e-02	k: 1674	n:30000
KS ci ratio: 5.523160e-02	ci left: 1.397815e-01	ci right 1.477543e-01	k: 4312	n:30000
OR2T8   30000 perm   6 sec   (5085 perm/sec)   p_kst 1.437333e-01   p_cons 5.580000e-02   p_joint 4.730000e-02

Joint ci ratio: 7.633393e-02	ci left: 5.948421e-02	ci right 6.422964e-02	k: 2473	n:40000
Cons ci ratio: 8.068178e-02	ci left: 5.347231e-02	ci right 5.799246e-02	k: 2228	n:40000
KS ci ratio: 4.724671e-02	ci left: 1.433450e-01	ci right 1.503063e-01	k: 5872	n:40000
OR2T8   40000 perm   8 sec   (4924 perm/sec)   p_kst 1.468000e-01   p_cons 5.570000e-02   p_joint 6.182500e-02

Outputting figure to mutsig2_images.part000000000121/OR2T8.8_941_40000_0.1468_0.0557_0.061825.png
                gene_name: OR2T8
               theta_stop: 0.081 
                    nperm: 40000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.056 
      ci_cons_bounds_left: 0.053 
     ci_cons_bounds_right: 0.058 
                  p_joint: 0.062 
     ci_joint_bounds_left: 0.059 
    ci_joint_bounds_right: 0.064 

Current progress: 21 percent done.
OR4A16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.294291e-02	ci left: 3.446209e-01	ci right 3.634642e-01	k: 3540	n:10000
Cons ci ratio: 9.561004e-02	ci left: 1.369772e-01	ci right 1.508309e-01	k: 1438	n:10000
KS ci ratio: 3.838735e-02	ci left: 5.005505e-01	ci right 5.202435e-01	k: 5104	n:10000
OR4A16   10000 perm   2 sec   (5590 perm/sec)   p_kst 5.104000e-01   p_cons 1.438000e-01   p_joint 3.540000e-01

Outputting figure to mutsig2_images.part000000000121/OR4A16.8_989_10000_0.5104_0.1438_0.354.png
                gene_name: OR4A16
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 23 percent done.
OR4C11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.032798e-02	ci left: 3.679857e-01	ci right 3.870857e-01	k: 3775	n:10000
Cons ci ratio: 1.666254e-02	ci left: 8.397935e-01	ci right 8.540038e-01	k: 8470	n:10000
KS ci ratio: 8.176015e-02	ci left: 1.792031e-01	ci right 1.945798e-01	k: 1868	n:10000
OR4C11   10000 perm   2 sec   (5971 perm/sec)   p_kst 1.868000e-01   p_cons 8.470000e-01   p_joint 3.775000e-01

Outputting figure to mutsig2_images.part000000000121/OR4C11.8_935_10000_0.1868_0.847_0.3775.png
                gene_name: OR4C11
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 24 percent done.
OR4C12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.341748e-02	ci left: 4.392173e-01	ci right 4.588124e-01	k: 4490	n:10000
Cons ci ratio: 7.921578e-02	ci left: 1.888498e-01	ci right 2.045273e-01	k: 1966	n:10000
KS ci ratio: 3.566848e-02	ci left: 5.371811e-01	ci right 5.567915e-01	k: 5470	n:10000
OR4C12   10000 perm   2 sec   (5405 perm/sec)   p_kst 5.470000e-01   p_cons 1.966000e-01   p_joint 4.490000e-01

Outputting figure to mutsig2_images.part000000000121/OR4C12.8_934_10000_0.547_0.1966_0.449.png
                gene_name: OR4C12
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 25 percent done.
OR4D5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.512569e-01	ci left: 1.014137e-02	ci right 1.454954e-02	k: 122	n:10000
Cons ci ratio: 6.145491e-02	ci left: 2.802271e-01	ci right 2.980959e-01	k: 2891	n:10000
KS ci ratio: 8.756181e-01	ci left: 1.144300e-03	ci right 2.965502e-03	k: 19	n:10000
OR4D5   10000 perm   2 sec   (5299 perm/sec)   p_kst 1.900000e-03   p_cons 2.891000e-01   p_joint 1.220000e-02

Joint ci ratio: 1.883388e-01	ci left: 1.920075e-02	ci right 2.324013e-02	k: 423	n:20000
Cons ci ratio: 4.419073e-02	ci left: 2.760688e-01	ci right 2.885945e-01	k: 5646	n:20000
KS ci ratio: 6.191709e-01	ci left: 1.386997e-03	ci right 2.664760e-03	k: 39	n:20000
OR4D5   20000 perm   4 sec   (4779 perm/sec)   p_kst 1.950000e-03   p_cons 2.823000e-01   p_joint 2.115000e-02

Joint ci ratio: 1.939500e-01	ci left: 1.212952e-02	ci right 1.476595e-02	k: 402	n:30000
Cons ci ratio: 3.528376e-02	ci left: 2.863280e-01	ci right 2.966457e-01	k: 8744	n:30000
KS ci ratio: 5.055551e-01	ci left: 1.497445e-03	ci right 2.536133e-03	k: 59	n:30000
OR4D5   30000 perm   7 sec   (4578 perm/sec)   p_kst 1.966667e-03   p_cons 2.914667e-01   p_joint 1.340000e-02

Joint ci ratio: 1.821157e-01	ci left: 1.040661e-02	ci right 1.251521e-02	k: 457	n:40000
Cons ci ratio: 3.049573e-02	ci left: 2.878456e-01	ci right 2.967846e-01	k: 11692	n:40000
KS ci ratio: 4.351089e-01	ci left: 1.586184e-03	ci right 2.488564e-03	k: 80	n:40000
OR4D5   40000 perm   9 sec   (4450 perm/sec)   p_kst 2.000000e-03   p_cons 2.923000e-01   p_joint 1.142500e-02

Joint ci ratio: 1.756737e-01	ci left: 8.993356e-03	ci right 1.074425e-02	k: 492	n:50000
Cons ci ratio: 2.732807e-02	ci left: 2.875387e-01	ci right 2.955255e-01	k: 14576	n:50000
KS ci ratio: 3.716530e-01	ci left: 1.808469e-03	ci right 2.650996e-03	k: 110	n:50000
OR4D5   50000 perm   12 sec   (4337 perm/sec)   p_kst 2.200000e-03   p_cons 2.915200e-01   p_joint 9.840000e-03

Joint ci ratio: 1.899223e-01	ci left: 6.380249e-03	ci right 7.734757e-03	k: 422	n:60000
Cons ci ratio: 2.499783e-02	ci left: 2.870519e-01	ci right 2.943350e-01	k: 17441	n:60000
KS ci ratio: 3.395274e-01	ci left: 1.841037e-03	ci right 2.608386e-03	k: 132	n:60000
OR4D5   60000 perm   14 sec   (4250 perm/sec)   p_kst 2.200000e-03   p_cons 2.906833e-01   p_joint 7.033333e-03

Joint ci ratio: 1.375371e-01	ci left: 1.068192e-02	ci right 1.227325e-02	k: 802	n:70000
Cons ci ratio: 2.403619e-02	ci left: 2.720218e-01	ci right 2.786540e-01	k: 19273	n:70000
KS ci ratio: 3.176063e-01	ci left: 1.827092e-03	ci right 2.529483e-03	k: 151	n:70000
OR4D5   70000 perm   17 sec   (4166 perm/sec)   p_kst 2.157143e-03   p_cons 2.753286e-01   p_joint 1.145714e-02

Joint ci ratio: 1.980113e-01	ci left: 4.392248e-03	ci right 5.369190e-03	k: 389	n:80000
Cons ci ratio: 2.248833e-02	ci left: 2.721569e-01	ci right 2.783594e-01	k: 22020	n:80000
KS ci ratio: 3.021150e-01	ci left: 1.783157e-03	ci right 2.428804e-03	k: 167	n:80000
OR4D5   80000 perm   20 sec   (4091 perm/sec)   p_kst 2.087500e-03   p_cons 2.752500e-01   p_joint 4.862500e-03

Joint ci ratio: 1.945880e-01	ci left: 4.052060e-03	ci right 4.935901e-03	k: 403	n:90000
Cons ci ratio: 2.118134e-02	ci left: 2.727269e-01	ci right 2.785765e-01	k: 24808	n:90000
KS ci ratio: 2.863592e-01	ci left: 1.780568e-03	ci right 2.385578e-03	k: 186	n:90000
OR4D5   90000 perm   22 sec   (4021 perm/sec)   p_kst 2.066667e-03   p_cons 2.756444e-01   p_joint 4.477778e-03

Joint ci ratio: 1.600895e-01	ci left: 5.482713e-03	ci right 6.446281e-03	k: 595	n:100000
Cons ci ratio: 2.011280e-02	ci left: 2.725132e-01	ci right 2.780598e-01	k: 27528	n:100000
KS ci ratio: 2.735025e-01	ci left: 1.769880e-03	ci right 2.339621e-03	k: 204	n:100000
OR4D5   100000 perm   25 sec   (3951 perm/sec)   p_kst 2.040000e-03   p_cons 2.752800e-01   p_joint 5.950000e-03

Joint ci ratio: 1.546210e-01	ci left: 5.359776e-03	ci right 6.266578e-03	k: 638	n:110000
Cons ci ratio: 1.917195e-02	ci left: 2.727434e-01	ci right 2.780321e-01	k: 30292	n:110000
KS ci ratio: 2.616480e-01	ci left: 1.770128e-03	ci right 2.311212e-03	k: 223	n:110000
OR4D5   110000 perm   28 sec   (3886 perm/sec)   p_kst 2.027273e-03   p_cons 2.753818e-01   p_joint 5.800000e-03

Joint ci ratio: 1.522810e-01	ci left: 5.073337e-03	ci right 5.917498e-03	k: 658	n:120000
Cons ci ratio: 1.835035e-02	ci left: 2.729735e-01	ci right 2.780373e-01	k: 33060	n:120000
KS ci ratio: 2.517319e-01	ci left: 1.762969e-03	ci right 2.278240e-03	k: 241	n:120000
OR4D5   120000 perm   31 sec   (3826 perm/sec)   p_kst 2.008333e-03   p_cons 2.755000e-01   p_joint 5.483333e-03

Joint ci ratio: 1.502645e-01	ci left: 4.816252e-03	ci right 5.606066e-03	k: 676	n:130000
Cons ci ratio: 1.765803e-02	ci left: 2.724512e-01	ci right 2.773127e-01	k: 35734	n:130000
KS ci ratio: 2.405572e-01	ci left: 1.793374e-03	ci right 2.290796e-03	k: 264	n:130000
OR4D5   130000 perm   35 sec   (3767 perm/sec)   p_kst 2.030769e-03   p_cons 2.748769e-01   p_joint 5.200000e-03

Joint ci ratio: 1.223520e-01	ci left: 6.833036e-03	ci right 7.730410e-03	k: 1018	n:140000
Cons ci ratio: 1.700256e-02	ci left: 2.728474e-01	ci right 2.775334e-01	k: 38526	n:140000
KS ci ratio: 2.348716e-01	ci left: 1.752599e-03	ci right 2.225551e-03	k: 277	n:140000
OR4D5   140000 perm   38 sec   (3709 perm/sec)   p_kst 1.978571e-03   p_cons 2.751857e-01   p_joint 7.271429e-03

Joint ci ratio: 1.271826e-01	ci left: 5.892916e-03	ci right 6.699680e-03	k: 943	n:150000
Cons ci ratio: 1.643096e-02	ci left: 2.728079e-01	ci right 2.773341e-01	k: 41260	n:150000
KS ci ratio: 2.268531e-01	ci left: 1.761383e-03	ci right 2.218210e-03	k: 297	n:150000
OR4D5   150000 perm   41 sec   (3654 perm/sec)   p_kst 1.980000e-03   p_cons 2.750667e-01   p_joint 6.286667e-03

Joint ci ratio: 1.052976e-01	ci left: 8.135095e-03	ci right 9.045346e-03	k: 1373	n:160000
Cons ci ratio: 1.591089e-02	ci left: 2.728380e-01	ci right 2.772201e-01	k: 44004	n:160000
KS ci ratio: 2.185728e-01	ci left: 1.787033e-03	ci right 2.231323e-03	k: 320	n:160000
OR4D5   160000 perm   44 sec   (3604 perm/sec)   p_kst 2.000000e-03   p_cons 2.750250e-01   p_joint 8.581250e-03

Joint ci ratio: 1.046736e-01	ci left: 7.753854e-03	ci right 8.615986e-03	k: 1390	n:170000
Cons ci ratio: 1.543044e-02	ci left: 2.730427e-01	ci right 2.772944e-01	k: 46778	n:170000
KS ci ratio: 2.120663e-01	ci left: 1.793218e-03	ci right 2.224049e-03	k: 340	n:170000
OR4D5   170000 perm   48 sec   (3559 perm/sec)   p_kst 2.000000e-03   p_cons 2.751647e-01   p_joint 8.176471e-03

Joint ci ratio: 1.035411e-01	ci left: 7.490769e-03	ci right 8.314087e-03	k: 1421	n:180000
Cons ci ratio: 1.499083e-02	ci left: 2.732319e-01	ci right 2.773643e-01	k: 49553	n:180000
KS ci ratio: 2.058228e-01	ci left: 1.804159e-03	ci right 2.223251e-03	k: 361	n:180000
OR4D5   180000 perm   51 sec   (3515 perm/sec)   p_kst 2.005556e-03   p_cons 2.752944e-01   p_joint 7.894444e-03

Joint ci ratio: 1.099347e-01	ci left: 6.281778e-03	ci right 7.017606e-03	k: 1262	n:190000
Cons ci ratio: 1.458734e-02	ci left: 2.733869e-01	ci right 2.774094e-01	k: 52325	n:190000
KS ci ratio: 1.988040e-01	ci left: 1.839118e-03	ci right 2.249997e-03	k: 387	n:190000
OR4D5   190000 perm   55 sec   (3475 perm/sec)   p_kst 2.036842e-03   p_cons 2.753947e-01   p_joint 6.642105e-03

Joint ci ratio: 1.072516e-01	ci left: 6.278997e-03	ci right 6.995415e-03	k: 1326	n:200000
Cons ci ratio: 1.421745e-02	ci left: 2.734530e-01	ci right 2.773735e-01	k: 55082	n:200000
KS ci ratio: 1.929250e-01	ci left: 1.861280e-03	ci right 2.263371e-03	k: 411	n:200000
OR4D5   200000 perm   58 sec   (3432 perm/sec)   p_kst 2.055000e-03   p_cons 2.754100e-01   p_joint 6.630000e-03

Joint ci ratio: 1.084259e-01	ci left: 5.850190e-03	ci right 6.525455e-03	k: 1298	n:210000
Cons ci ratio: 1.386822e-02	ci left: 2.736897e-01	ci right 2.775165e-01	k: 57876	n:210000
KS ci ratio: 1.886254e-01	ci left: 1.858803e-03	ci right 2.250384e-03	k: 430	n:210000
OR4D5   210000 perm   62 sec   (3387 perm/sec)   p_kst 2.047619e-03   p_cons 2.756000e-01   p_joint 6.180952e-03

Joint ci ratio: 1.060844e-01	ci left: 5.840835e-03	ci right 6.499551e-03	k: 1356	n:220000
Cons ci ratio: 1.354505e-02	ci left: 2.738606e-01	ci right 2.775999e-01	k: 60660	n:220000
KS ci ratio: 1.839875e-01	ci left: 1.869649e-03	ci right 2.252751e-03	k: 452	n:220000
OR4D5   220000 perm   66 sec   (3341 perm/sec)   p_kst 2.054545e-03   p_cons 2.757273e-01   p_joint 6.163636e-03

Joint ci ratio: 1.085393e-01	ci left: 5.332941e-03	ci right 5.949183e-03	k: 1296	n:230000
Cons ci ratio: 1.324377e-02	ci left: 2.740089e-01	ci right 2.776663e-01	k: 63442	n:230000
KS ci ratio: 1.792979e-01	ci left: 1.887965e-03	ci right 2.263890e-03	k: 476	n:230000
OR4D5   230000 perm   70 sec   (3299 perm/sec)   p_kst 2.069565e-03   p_cons 2.758348e-01   p_joint 5.634783e-03

Joint ci ratio: 1.089754e-01	ci left: 5.070164e-03	ci right 5.658545e-03	k: 1286	n:240000
Cons ci ratio: 1.297675e-02	ci left: 2.736841e-01	ci right 2.772630e-01	k: 66113	n:240000
KS ci ratio: 1.753004e-01	ci left: 1.896900e-03	ci right 2.265291e-03	k: 498	n:240000
OR4D5   240000 perm   74 sec   (3258 perm/sec)   p_kst 2.075000e-03   p_cons 2.754708e-01   p_joint 5.358333e-03

Joint ci ratio: 1.060847e-01	ci left: 5.143730e-03	ci right 5.723826e-03	k: 1357	n:250000
Cons ci ratio: 1.270855e-02	ci left: 2.739090e-01	ci right 2.774162e-01	k: 68915	n:250000
KS ci ratio: 1.704155e-01	ci left: 1.932009e-03	ci right 2.295689e-03	k: 527	n:250000
OR4D5   250000 perm   78 sec   (3219 perm/sec)   p_kst 2.108000e-03   p_cons 2.756600e-01   p_joint 5.428000e-03

Joint ci ratio: 1.047474e-01	ci left: 5.076951e-03	ci right 5.641854e-03	k: 1392	n:260000
Cons ci ratio: 1.246387e-02	ci left: 2.738754e-01	ci right 2.773142e-01	k: 71654	n:260000
KS ci ratio: 1.662167e-01	ci left: 1.957175e-03	ci right 2.315606e-03	k: 554	n:260000
OR4D5   260000 perm   82 sec   (3179 perm/sec)   p_kst 2.130769e-03   p_cons 2.755923e-01   p_joint 5.353846e-03

Joint ci ratio: 1.042699e-01	ci left: 4.935787e-03	ci right 5.482324e-03	k: 1405	n:270000
Cons ci ratio: 1.222872e-02	ci left: 2.739780e-01	ci right 2.773527e-01	k: 74429	n:270000
KS ci ratio: 1.631587e-01	ci left: 1.959260e-03	ci right 2.310824e-03	k: 575	n:270000
OR4D5   270000 perm   86 sec   (3140 perm/sec)   p_kst 2.129630e-03   p_cons 2.756630e-01   p_joint 5.203704e-03

Joint ci ratio: 9.968070e-02	ci left: 5.218956e-03	ci right 5.769927e-03	k: 1537	n:280000
Cons ci ratio: 1.177959e-02	ci left: 2.817420e-01	ci right 2.850840e-01	k: 79355	n:280000
KS ci ratio: 1.594625e-01	ci left: 1.981824e-03	ci right 2.328610e-03	k: 602	n:280000
OR4D5   280000 perm   90 sec   (3098 perm/sec)   p_kst 2.150000e-03   p_cons 2.834107e-01   p_joint 5.489286e-03

Joint ci ratio: 8.750527e-02	ci left: 6.571571e-03	ci right 7.176278e-03	k: 1992	n:290000
Cons ci ratio: 1.113707e-02	ci left: 2.976576e-01	ci right 3.009946e-01	k: 86804	n:290000
KS ci ratio: 1.562553e-01	ci left: 1.996288e-03	ci right 2.337921e-03	k: 627	n:290000
OR4D5   290000 perm   95 sec   (3050 perm/sec)   p_kst 2.162069e-03   p_cons 2.993241e-01   p_joint 6.868966e-03

Joint ci ratio: 7.578277e-02	ci left: 8.504860e-03	ci right 9.178013e-03	k: 2651	n:300000
Cons ci ratio: 1.095522e-02	ci left: 2.974818e-01	ci right 3.007620e-01	k: 89736	n:300000
KS ci ratio: 1.537067e-01	ci left: 1.997031e-03	ci right 2.332703e-03	k: 648	n:300000
OR4D5   300000 perm   100 sec   (3008 perm/sec)   p_kst 2.160000e-03   p_cons 2.991200e-01   p_joint 8.836667e-03

Joint ci ratio: 7.970619e-02	ci left: 7.433234e-03	ci right 8.053441e-03	k: 2399	n:310000
Cons ci ratio: 1.077983e-02	ci left: 2.974015e-01	ci right 3.006280e-01	k: 92694	n:310000
KS ci ratio: 1.518477e-01	ci left: 1.982249e-03	ci right 2.311040e-03	k: 664	n:310000
OR4D5   310000 perm   104 sec   (2968 perm/sec)   p_kst 2.141935e-03   p_cons 2.990129e-01   p_joint 7.738710e-03

Joint ci ratio: 7.863375e-02	ci left: 7.403108e-03	ci right 8.012108e-03	k: 2465	n:320000
Cons ci ratio: 1.060778e-02	ci left: 2.975170e-01	ci right 3.006929e-01	k: 95713	n:320000
KS ci ratio: 1.493965e-01	ci left: 1.986463e-03	ci right 2.310159e-03	k: 686	n:320000
OR4D5   320000 perm   110 sec   (2901 perm/sec)   p_kst 2.143750e-03   p_cons 2.991031e-01   p_joint 7.703125e-03

Joint ci ratio: 7.882032e-02	ci left: 7.146057e-03	ci right 7.735370e-03	k: 2454	n:330000
Cons ci ratio: 1.043790e-02	ci left: 2.978588e-01	ci right 3.009871e-01	k: 98809	n:330000
KS ci ratio: 1.466463e-01	ci left: 2.002138e-03	ci right 2.321857e-03	k: 712	n:330000
OR4D5   330000 perm   115 sec   (2866 perm/sec)   p_kst 2.157576e-03   p_cons 2.994212e-01   p_joint 7.436364e-03

Joint ci ratio: 7.950045e-02	ci left: 6.817632e-03	ci right 7.384936e-03	k: 2413	n:340000
Cons ci ratio: 1.027772e-02	ci left: 2.981075e-01	ci right 3.011901e-01	k: 101880	n:340000
KS ci ratio: 1.442383e-01	ci left: 2.011272e-03	ci right 2.326721e-03	k: 736	n:340000
OR4D5   340000 perm   121 sec   (2805 perm/sec)   p_kst 2.164706e-03   p_cons 2.996471e-01   p_joint 7.097059e-03

Joint ci ratio: 8.215447e-02	ci left: 6.197251e-03	ci right 6.730970e-03	k: 2261	n:350000
Cons ci ratio: 1.013221e-02	ci left: 2.980313e-01	ci right 3.010692e-01	k: 104842	n:350000
KS ci ratio: 1.428891e-01	ci left: 1.992369e-03	ci right 2.301681e-03	k: 750	n:350000
OR4D5   350000 perm   127 sec   (2764 perm/sec)   p_kst 2.142857e-03   p_cons 2.995486e-01   p_joint 6.460000e-03

Joint ci ratio: 8.178074e-02	ci left: 6.082228e-03	ci right 6.603544e-03	k: 2282	n:360000
Cons ci ratio: 9.989210e-03	ci left: 2.981066e-01	ci right 3.011022e-01	k: 107857	n:360000
KS ci ratio: 1.412076e-01	ci left: 1.985248e-03	ci right 2.289522e-03	k: 768	n:360000
OR4D5   360000 perm   132 sec   (2736 perm/sec)   p_kst 2.133333e-03   p_cons 2.996028e-01   p_joint 6.338889e-03

Joint ci ratio: 8.102354e-02	ci left: 6.031687e-03	ci right 6.543659e-03	k: 2325	n:370000
Cons ci ratio: 9.851396e-03	ci left: 2.982079e-01	ci right 3.011628e-01	k: 110883	n:370000
KS ci ratio: 1.390538e-01	ci left: 1.994184e-03	ci right 2.294780e-03	k: 792	n:370000
OR4D5   370000 perm   136 sec   (2711 perm/sec)   p_kst 2.140541e-03   p_cons 2.996838e-01   p_joint 6.283784e-03

Joint ci ratio: 8.040658e-02	ci left: 5.965775e-03	ci right 6.468115e-03	k: 2361	n:380000
Cons ci ratio: 9.721510e-03	ci left: 2.982016e-01	ci right 3.011173e-01	k: 113870	n:380000
KS ci ratio: 1.369958e-01	ci left: 2.002683e-03	ci right 2.299727e-03	k: 816	n:380000
OR4D5   380000 perm   142 sec   (2685 perm/sec)   p_kst 2.147368e-03   p_cons 2.996579e-01   p_joint 6.213158e-03

Joint ci ratio: 8.000511e-02	ci left: 5.873099e-03	ci right 6.365051e-03	k: 2385	n:390000
Cons ci ratio: 9.598153e-03	ci left: 2.981293e-01	ci right 3.010071e-01	k: 116831	n:390000
KS ci ratio: 1.355117e-01	ci left: 1.995912e-03	ci right 2.288487e-03	k: 834	n:390000
OR4D5   390000 perm   147 sec   (2660 perm/sec)   p_kst 2.138462e-03   p_cons 2.995667e-01   p_joint 6.115385e-03

Joint ci ratio: 8.109539e-02	ci left: 5.571909e-03	ci right 6.045293e-03	k: 2322	n:400000
Cons ci ratio: 9.477456e-03	ci left: 2.981457e-01	ci right 3.009872e-01	k: 119826	n:400000
KS ci ratio: 1.339177e-01	ci left: 1.994329e-03	ci right 2.282959e-03	k: 854	n:400000
OR4D5   400000 perm   152 sec   (2635 perm/sec)   p_kst 2.135000e-03   p_cons 2.995650e-01   p_joint 5.805000e-03

Joint ci ratio: 7.993293e-02	ci left: 5.598526e-03	ci right 6.067036e-03	k: 2390	n:410000
Cons ci ratio: 9.363432e-03	ci left: 2.980616e-01	ci right 3.008680e-01	k: 122780	n:410000
KS ci ratio: 1.314781e-01	ci left: 2.021146e-03	ci right 2.307913e-03	k: 886	n:410000
OR4D5   410000 perm   157 sec   (2611 perm/sec)   p_kst 2.160976e-03   p_cons 2.994634e-01   p_joint 5.829268e-03

Joint ci ratio: 7.914345e-02	ci left: 5.577238e-03	ci right 6.039144e-03	k: 2438	n:420000
Cons ci ratio: 9.252796e-03	ci left: 2.980103e-01	ci right 3.007829e-01	k: 125746	n:420000
KS ci ratio: 1.302367e-01	ci left: 2.012174e-03	ci right 2.294764e-03	k: 903	n:420000
OR4D5   420000 perm   162 sec   (2587 perm/sec)   p_kst 2.150000e-03   p_cons 2.993952e-01   p_joint 5.804762e-03

Joint ci ratio: 7.859973e-02	ci left: 5.525039e-03	ci right 5.979334e-03	k: 2472	n:430000
Cons ci ratio: 9.147512e-03	ci left: 2.978919e-01	ci right 3.006317e-01	k: 128682	n:430000
KS ci ratio: 1.289597e-01	ci left: 2.005883e-03	ci right 2.284615e-03	k: 921	n:430000
OR4D5   430000 perm   168 sec   (2564 perm/sec)   p_kst 2.141860e-03   p_cons 2.992605e-01   p_joint 5.748837e-03

Joint ci ratio: 7.783319e-02	ci left: 5.508654e-03	ci right 5.956984e-03	k: 2521	n:440000
Cons ci ratio: 9.038686e-03	ci left: 2.981059e-01	ci right 3.008149e-01	k: 131762	n:440000
KS ci ratio: 1.277195e-01	ci left: 1.999890e-03	ci right 2.274914e-03	k: 939	n:440000
OR4D5   440000 perm   173 sec   (2541 perm/sec)   p_kst 2.134091e-03   p_cons 2.994591e-01   p_joint 5.729545e-03

Joint ci ratio: 7.727021e-02	ci left: 5.466862e-03	ci right 5.908428e-03	k: 2558	n:450000
Cons ci ratio: 8.932753e-03	ci left: 2.983528e-01	ci right 3.010320e-01	k: 134861	n:450000
KS ci ratio: 1.262506e-01	ci left: 2.002784e-03	ci right 2.274801e-03	k: 961	n:450000
OR4D5   450000 perm   179 sec   (2518 perm/sec)   p_kst 2.135556e-03   p_cons 2.996911e-01   p_joint 5.684444e-03

Joint ci ratio: 7.715383e-02	ci left: 5.365062e-03	ci right 5.797723e-03	k: 2566	n:460000
Cons ci ratio: 8.830548e-03	ci left: 2.985847e-01	ci right 3.012352e-01	k: 137958	n:460000
KS ci ratio: 1.248312e-01	ci left: 2.005569e-03	ci right 2.274676e-03	k: 983	n:460000
OR4D5   460000 perm   184 sec   (2495 perm/sec)   p_kst 2.136957e-03   p_cons 2.999087e-01   p_joint 5.578261e-03

Joint ci ratio: 7.755434e-02	ci left: 5.196646e-03	ci right 5.617998e-03	k: 2540	n:470000
Cons ci ratio: 8.735574e-03	ci left: 2.986242e-01	ci right 3.012464e-01	k: 140969	n:470000
KS ci ratio: 1.237672e-01	ci left: 1.997943e-03	ci right 2.263574e-03	k: 1000	n:470000
OR4D5   470000 perm   190 sec   (2473 perm/sec)   p_kst 2.127660e-03   p_cons 2.999340e-01   p_joint 5.404255e-03

Joint ci ratio: 7.886419e-02	ci left: 4.918819e-03	ci right 5.324690e-03	k: 2457	n:480000
Cons ci ratio: 8.644244e-03	ci left: 2.986309e-01	ci right 3.012256e-01	k: 143965	n:480000
KS ci ratio: 1.226696e-01	ci left: 1.992663e-03	ci right 2.255072e-03	k: 1018	n:480000
OR4D5   480000 perm   196 sec   (2450 perm/sec)   p_kst 2.120833e-03   p_cons 2.999271e-01   p_joint 5.118750e-03

Joint ci ratio: 7.824687e-02	ci left: 4.896461e-03	ci right 5.297180e-03	k: 2496	n:490000
Cons ci ratio: 8.554057e-03	ci left: 2.987191e-01	ci right 3.012873e-01	k: 147001	n:490000
KS ci ratio: 1.213664e-01	ci left: 1.995524e-03	ci right 2.255317e-03	k: 1040	n:490000
OR4D5   490000 perm   202 sec   (2427 perm/sec)   p_kst 2.122449e-03   p_cons 3.000020e-01   p_joint 5.093878e-03

Joint ci ratio: 8.084610e-02	ci left: 4.490738e-03	ci right 4.871036e-03	k: 2339	n:500000
Cons ci ratio: 8.467078e-03	ci left: 2.987819e-01	ci right 3.013244e-01	k: 150026	n:500000
KS ci ratio: 1.201605e-01	ci left: 1.996345e-03	ci right 2.253479e-03	k: 1061	n:500000
OR4D5   500000 perm   208 sec   (2406 perm/sec)   p_kst 2.122000e-03   p_cons 3.000520e-01   p_joint 4.678000e-03

Joint ci ratio: 8.045357e-02	ci left: 4.446869e-03	ci right 4.821538e-03	k: 2362	n:510000
Cons ci ratio: 8.383286e-03	ci left: 2.988130e-01	ci right 3.013305e-01	k: 153036	n:510000
KS ci ratio: 1.189348e-01	ci left: 1.999048e-03	ci right 2.253720e-03	k: 1083	n:510000
OR4D5   510000 perm   214 sec   (2384 perm/sec)   p_kst 2.123529e-03   p_cons 3.000706e-01   p_joint 4.631373e-03

Joint ci ratio: 8.010040e-02	ci left: 4.400922e-03	ci right 4.770016e-03	k: 2383	n:520000
Cons ci ratio: 8.304101e-03	ci left: 2.987335e-01	ci right 3.012264e-01	k: 155989	n:520000
KS ci ratio: 1.174801e-01	ci left: 2.010993e-03	ci right 2.263836e-03	k: 1110	n:520000
OR4D5   520000 perm   220 sec   (2364 perm/sec)   p_kst 2.134615e-03   p_cons 2.999788e-01   p_joint 4.582692e-03

Joint ci ratio: 7.938786e-02	ci left: 4.397400e-03	ci right 4.762765e-03	k: 2426	n:530000
Cons ci ratio: 8.226267e-03	ci left: 2.987005e-01	ci right 3.011696e-01	k: 158965	n:530000
KS ci ratio: 1.165919e-01	ci left: 2.004186e-03	ci right 2.254136e-03	k: 1127	n:530000
OR4D5   530000 perm   226 sec   (2344 perm/sec)   p_kst 2.126415e-03   p_cons 2.999340e-01   p_joint 4.577358e-03

Joint ci ratio: 7.195105e-02	ci left: 5.269916e-03	ci right 5.665048e-03	k: 2951	n:540000
Cons ci ratio: 8.147312e-03	ci left: 2.988371e-01	ci right 3.012836e-01	k: 162032	n:540000
KS ci ratio: 1.156730e-01	ci left: 1.999436e-03	ci right 2.246695e-03	k: 1145	n:540000
OR4D5   540000 perm   232 sec   (2323 perm/sec)   p_kst 2.120370e-03   p_cons 3.000593e-01   p_joint 5.464815e-03

Joint ci ratio: 7.142145e-02	ci left: 5.252664e-03	ci right 5.643483e-03	k: 2995	n:550000
Cons ci ratio: 8.071844e-03	ci left: 2.989035e-01	ci right 3.013277e-01	k: 165063	n:550000
KS ci ratio: 1.149736e-01	ci left: 1.987802e-03	ci right 2.232035e-03	k: 1159	n:550000
OR4D5   550000 perm   239 sec   (2303 perm/sec)   p_kst 2.107273e-03   p_cons 3.001145e-01   p_joint 5.445455e-03

Joint ci ratio: 7.169006e-02	ci left: 5.120271e-03	ci right 5.502731e-03	k: 2973	n:560000
Cons ci ratio: 7.999489e-03	ci left: 2.989123e-01	ci right 3.013148e-01	k: 168063	n:560000
KS ci ratio: 1.141407e-01	ci left: 1.981793e-03	ci right 2.223404e-03	k: 1176	n:560000
OR4D5   560000 perm   245 sec   (2283 perm/sec)   p_kst 2.100000e-03   p_cons 3.001125e-01   p_joint 5.308929e-03

Joint ci ratio: 7.102430e-02	ci left: 5.126935e-03	ci right 5.506190e-03	k: 3029	n:570000
Cons ci ratio: 7.928582e-03	ci left: 2.989454e-01	ci right 3.013268e-01	k: 171077	n:570000
KS ci ratio: 1.134209e-01	ci left: 1.972591e-03	ci right 2.211462e-03	k: 1191	n:570000
OR4D5   570000 perm   252 sec   (2264 perm/sec)   p_kst 2.089474e-03   p_cons 3.001351e-01   p_joint 5.314035e-03

Joint ci ratio: 7.112202e-02	ci left: 5.024982e-03	ci right 5.397228e-03	k: 3021	n:580000
Cons ci ratio: 7.858431e-03	ci left: 2.990361e-01	ci right 3.013970e-01	k: 174125	n:580000
KS ci ratio: 1.126210e-01	ci left: 1.967062e-03	ci right 2.203473e-03	k: 1208	n:580000
OR4D5   580000 perm   258 sec   (2244 perm/sec)   p_kst 2.082759e-03   p_cons 3.002155e-01   p_joint 5.208621e-03

Joint ci ratio: 7.047184e-02	ci left: 5.033049e-03	ci right 5.402344e-03	k: 3077	n:590000
Cons ci ratio: 7.788947e-03	ci left: 2.991864e-01	ci right 3.015275e-01	k: 177210	n:590000
KS ci ratio: 1.116555e-01	ci left: 1.968317e-03	ci right 2.202717e-03	k: 1229	n:590000
OR4D5   590000 perm   265 sec   (2225 perm/sec)   p_kst 2.083051e-03   p_cons 3.003559e-01   p_joint 5.215254e-03

Joint ci ratio: 7.068296e-02	ci left: 4.919684e-03	ci right 5.281787e-03	k: 3059	n:600000
Cons ci ratio: 7.723569e-03	ci left: 2.992069e-01	ci right 3.015284e-01	k: 180220	n:600000
KS ci ratio: 1.107587e-01	ci left: 1.967918e-03	ci right 2.200265e-03	k: 1249	n:600000
OR4D5   600000 perm   272 sec   (2206 perm/sec)   p_kst 2.081667e-03   p_cons 3.003667e-01   p_joint 5.098333e-03

Joint ci ratio: 7.013519e-02	ci left: 4.916336e-03	ci right 5.275274e-03	k: 3107	n:610000
Cons ci ratio: 7.660050e-03	ci left: 2.992137e-01	ci right 3.015161e-01	k: 183222	n:610000
KS ci ratio: 1.098832e-01	ci left: 1.967539e-03	ci right 2.197886e-03	k: 1269	n:610000
OR4D5   610000 perm   279 sec   (2188 perm/sec)   p_kst 2.080328e-03   p_cons 3.003639e-01   p_joint 5.093443e-03

Joint ci ratio: 7.094556e-02	ci left: 4.726112e-03	ci right 5.075313e-03	k: 3037	n:620000
Cons ci ratio: 7.595653e-03	ci left: 2.993541e-01	ci right 3.016381e-01	k: 186307	n:620000
KS ci ratio: 1.086490e-01	ci left: 1.981301e-03	ci right 2.210488e-03	k: 1298	n:620000
OR4D5   620000 perm   286 sec   (2170 perm/sec)   p_kst 2.093548e-03   p_cons 3.004952e-01   p_joint 4.898387e-03

Joint ci ratio: 7.064520e-02	ci left: 4.691631e-03	ci right 5.036756e-03	k: 3063	n:630000
Cons ci ratio: 7.534957e-03	ci left: 2.993728e-01	ci right 3.016386e-01	k: 189318	n:630000
KS ci ratio: 1.077813e-01	ci left: 1.982283e-03	ci right 2.209636e-03	k: 1319	n:630000
OR4D5   630000 perm   293 sec   (2151 perm/sec)   p_kst 2.093651e-03   p_cons 3.005048e-01   p_joint 4.861905e-03

Joint ci ratio: 7.158111e-02	ci left: 4.497065e-03	ci right 4.832442e-03	k: 2984	n:640000
Cons ci ratio: 7.476917e-03	ci left: 2.993223e-01	ci right 3.015702e-01	k: 192285	n:640000
KS ci ratio: 1.069340e-01	ci left: 1.983242e-03	ci right 2.208803e-03	k: 1340	n:640000
OR4D5   640000 perm   300 sec   (2132 perm/sec)   p_kst 2.093750e-03   p_cons 3.004453e-01   p_joint 4.662500e-03

Joint ci ratio: 7.095362e-02	ci left: 4.507966e-03	ci right 4.841088e-03	k: 3037	n:650000
Cons ci ratio: 7.418540e-03	ci left: 2.993671e-01	ci right 3.015977e-01	k: 195313	n:650000
KS ci ratio: 1.059895e-01	ci left: 1.988670e-03	ci right 2.212727e-03	k: 1364	n:650000
OR4D5   650000 perm   307 sec   (2115 perm/sec)   p_kst 2.098462e-03   p_cons 3.004815e-01   p_joint 4.672308e-03

Joint ci ratio: 7.119195e-02	ci left: 4.409891e-03	ci right 4.736905e-03	k: 3017	n:660000
Cons ci ratio: 7.363261e-03	ci left: 2.993108e-01	ci right 3.015243e-01	k: 198275	n:660000
KS ci ratio: 1.050696e-01	ci left: 1.993943e-03	ci right 2.216524e-03	k: 1388	n:660000
OR4D5   660000 perm   315 sec   (2098 perm/sec)   p_kst 2.103030e-03   p_cons 3.004167e-01   p_joint 4.571212e-03

Joint ci ratio: 7.084157e-02	ci left: 4.388051e-03	ci right 4.711778e-03	k: 3047	n:670000
Cons ci ratio: 7.307227e-03	ci left: 2.993695e-01	ci right 3.015665e-01	k: 201313	n:670000
KS ci ratio: 1.045446e-01	ci left: 1.984530e-03	ci right 2.204885e-03	k: 1402	n:670000
OR4D5   670000 perm   322 sec   (2081 perm/sec)   p_kst 2.092537e-03   p_cons 3.004672e-01   p_joint 4.547761e-03

Joint ci ratio: 7.031295e-02	ci left: 4.389974e-03	ci right 4.711328e-03	k: 3093	n:680000
Cons ci ratio: 7.255448e-03	ci left: 2.992532e-01	ci right 3.014338e-01	k: 204233	n:680000
KS ci ratio: 1.037344e-01	ci left: 1.986856e-03	ci right 2.205656e-03	k: 1424	n:680000
OR4D5   680000 perm   329 sec   (2064 perm/sec)   p_kst 2.094118e-03   p_cons 3.003426e-01   p_joint 4.548529e-03

Joint ci ratio: 6.478383e-02	ci left: 5.107220e-03	ci right 5.450577e-03	k: 3641	n:690000
Cons ci ratio: 7.201077e-03	ci left: 2.993546e-01	ci right 3.015195e-01	k: 207301	n:690000
KS ci ratio: 1.028359e-01	ci left: 1.993357e-03	ci right 2.210857e-03	k: 1449	n:690000
OR4D5   690000 perm   337 sec   (2048 perm/sec)   p_kst 2.100000e-03   p_cons 3.004362e-01   p_joint 5.276812e-03

Joint ci ratio: 6.441398e-02	ci left: 5.093289e-03	ci right 5.433682e-03	k: 3683	n:700000
Cons ci ratio: 7.149951e-03	ci left: 2.993333e-01	ci right 3.014826e-01	k: 210285	n:700000
KS ci ratio: 1.023436e-01	ci left: 1.984367e-03	ci right 2.199787e-03	k: 1463	n:700000
OR4D5   700000 perm   345 sec   (2032 perm/sec)   p_kst 2.090000e-03   p_cons 3.004071e-01   p_joint 5.261429e-03

Joint ci ratio: 6.614403e-02	ci left: 4.759673e-03	ci right 5.086640e-03	k: 3494	n:710000
Cons ci ratio: 7.384666e-03	ci left: 2.830652e-01	ci right 2.851647e-01	k: 201721	n:710000
KS ci ratio: 1.015831e-01	ci left: 1.986614e-03	ci right 2.200579e-03	k: 1485	n:710000
OR4D5   710000 perm   352 sec   (2016 perm/sec)   p_kst 2.091549e-03   p_cons 2.841141e-01   p_joint 4.921127e-03

Joint ci ratio: 6.579722e-02	ci left: 4.744106e-03	ci right 5.068230e-03	k: 3531	n:720000
Cons ci ratio: 7.333959e-03	ci left: 2.830307e-01	ci right 2.851155e-01	k: 204532	n:720000
KS ci ratio: 1.008393e-01	ci left: 1.988805e-03	ci right 2.201344e-03	k: 1507	n:720000
OR4D5   720000 perm   360 sec   (2001 perm/sec)   p_kst 2.093056e-03   p_cons 2.840722e-01   p_joint 4.904167e-03

Joint ci ratio: 6.537304e-02	ci left: 4.741099e-03	ci right 5.062850e-03	k: 3577	n:730000
Cons ci ratio: 7.281928e-03	ci left: 2.831286e-01	ci right 2.851992e-01	k: 207439	n:730000
KS ci ratio: 1.001772e-01	ci left: 1.988269e-03	ci right 2.199275e-03	k: 1527	n:730000
OR4D5   730000 perm   368 sec   (1986 perm/sec)   p_kst 2.091781e-03   p_cons 2.841630e-01   p_joint 4.900000e-03

Joint ci ratio: 6.622686e-02	ci left: 4.556066e-03	ci right 4.869452e-03	k: 3486	n:740000
Cons ci ratio: 7.232767e-03	ci left: 2.831239e-01	ci right 2.851805e-01	k: 210272	n:740000
KS ci ratio: 9.933534e-02	ci left: 1.995660e-03	ci right 2.205566e-03	k: 1553	n:740000
OR4D5   740000 perm   376 sec   (1971 perm/sec)   p_kst 2.098649e-03   p_cons 2.841514e-01   p_joint 4.710811e-03

Outputting figure to mutsig2_images.part000000000121/OR4D5.8_961_740000_0.0020986_0.28415_0.0047108.png
                gene_name: OR4D5
               theta_stop: 0.099 
                    nperm: 740000 
                     p_ks: 0.0021 
        ci_ks_bounds_left: 0.0020 
       ci_ks_bounds_right: 0.0022 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.0047 
     ci_joint_bounds_left: 0.0046 
    ci_joint_bounds_right: 0.0049 

Current progress: 27 percent done.
OR2L8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.857837e-02	ci left: 8.088732e-01	ci right 8.241419e-01	k: 8166	n:10000
Cons ci ratio: 2.356124e-02	ci left: 7.258284e-01	ci right 7.432348e-01	k: 7346	n:10000
KS ci ratio: 2.790168e-02	ci left: 6.543436e-01	ci right 6.729609e-01	k: 6637	n:10000
OR2L8   10000 perm   2 sec   (5934 perm/sec)   p_kst 6.637000e-01   p_cons 7.346000e-01   p_joint 8.166000e-01

Outputting figure to mutsig2_images.part000000000121/OR2L8.7_943_10000_0.6637_0.7346_0.8166.png
                gene_name: OR2L8
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 28 percent done.
OR2T2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.903033e-01	ci left: 3.681611e-02	ci right 4.465430e-02	k: 406	n:10000
Cons ci ratio: 4.646584e-02	ci left: 4.060162e-01	ci right 4.254329e-01	k: 4157	n:10000
KS ci ratio: 7.991661e-01	ci left: 1.458544e-03	ci right 3.449143e-03	k: 23	n:10000
OR2T2   10000 perm   2 sec   (6035 perm/sec)   p_kst 2.300000e-03   p_cons 4.157000e-01   p_joint 4.060000e-02

Joint ci ratio: 1.968048e-01	ci left: 1.753359e-02	ci right 2.140790e-02	k: 388	n:20000
Cons ci ratio: 3.308697e-02	ci left: 4.055159e-01	ci right 4.192096e-01	k: 8247	n:20000
KS ci ratio: 6.191709e-01	ci left: 1.386997e-03	ci right 2.664760e-03	k: 39	n:20000
OR2T2   20000 perm   4 sec   (5426 perm/sec)   p_kst 1.950000e-03   p_cons 4.123500e-01   p_joint 1.940000e-02

Joint ci ratio: 1.790047e-01	ci left: 1.432368e-02	ci right 1.717122e-02	k: 471	n:30000
Cons ci ratio: 2.566440e-02	ci left: 4.318095e-01	ci right 4.430693e-01	k: 13123	n:30000
KS ci ratio: 4.894689e-01	ci left: 1.614063e-03	ci right 2.686024e-03	k: 63	n:30000
OR2T2   30000 perm   6 sec   (5158 perm/sec)   p_kst 2.100000e-03   p_cons 4.374333e-01   p_joint 1.570000e-02

Joint ci ratio: 2.217739e-01	ci left: 6.890396e-03	ci right 8.632207e-03	k: 309	n:40000
Cons ci ratio: 2.218725e-02	ci left: 4.334297e-01	ci right 4.431793e-01	k: 17532	n:40000
KS ci ratio: 4.351089e-01	ci left: 1.586184e-03	ci right 2.488564e-03	k: 80	n:40000
OR2T2   40000 perm   8 sec   (4986 perm/sec)   p_kst 2.000000e-03   p_cons 4.383000e-01   p_joint 7.725000e-03

Joint ci ratio: 2.237707e-01	ci left: 5.417421e-03	ci right 6.800864e-03	k: 304	n:50000
Cons ci ratio: 1.980883e-02	ci left: 4.348435e-01	ci right 4.435635e-01	k: 21960	n:50000
KS ci ratio: 4.017973e-01	ci left: 1.519490e-03	ci right 2.300160e-03	k: 94	n:50000
OR2T2   50000 perm   10 sec   (4856 perm/sec)   p_kst 1.880000e-03   p_cons 4.392000e-01   p_joint 6.080000e-03

Joint ci ratio: 2.257529e-01	ci left: 4.435614e-03	ci right 5.579739e-03	k: 299	n:60000
Cons ci ratio: 1.857838e-02	ci left: 4.219720e-01	ci right 4.299018e-01	k: 25556	n:60000
KS ci ratio: 3.700562e-01	ci left: 1.522126e-03	ci right 2.227456e-03	k: 111	n:60000
OR2T2   60000 perm   13 sec   (4745 perm/sec)   p_kst 1.850000e-03   p_cons 4.259333e-01   p_joint 4.983333e-03

Joint ci ratio: 1.907004e-01	ci left: 5.427709e-03	ci right 6.585244e-03	k: 419	n:70000
Cons ci ratio: 1.816774e-02	ci left: 3.957831e-01	ci right 4.030538e-01	k: 27959	n:70000
KS ci ratio: 3.383097e-01	ci left: 1.591065e-03	ci right 2.251319e-03	k: 133	n:70000
OR2T2   70000 perm   15 sec   (4643 perm/sec)   p_kst 1.900000e-03   p_cons 3.994143e-01   p_joint 5.985714e-03

Joint ci ratio: 2.342732e-01	ci left: 3.079068e-03	ci right 3.907583e-03	k: 278	n:80000
Cons ci ratio: 1.699138e-02	ci left: 3.961034e-01	ci right 4.029039e-01	k: 31960	n:80000
KS ci ratio: 3.208377e-01	ci left: 1.564174e-03	ci right 2.172862e-03	k: 148	n:80000
OR2T2   80000 perm   18 sec   (4538 perm/sec)   p_kst 1.850000e-03   p_cons 3.995000e-01   p_joint 3.475000e-03

Joint ci ratio: 2.382042e-01	ci left: 2.642794e-03	ci right 3.367604e-03	k: 269	n:90000
Cons ci ratio: 1.599522e-02	ci left: 3.970301e-01	ci right 4.034430e-01	k: 36021	n:90000
KS ci ratio: 3.030555e-01	ci left: 1.574734e-03	ci right 2.147028e-03	k: 166	n:90000
OR2T2   90000 perm   20 sec   (4455 perm/sec)   p_kst 1.844444e-03   p_cons 4.002333e-01   p_joint 2.988889e-03

Joint ci ratio: 1.519648e-01	ci left: 6.107494e-03	ci right 7.121442e-03	k: 660	n:100000
Cons ci ratio: 1.515842e-02	ci left: 3.977006e-01	ci right 4.037851e-01	k: 40074	n:100000
KS ci ratio: 2.887188e-01	ci left: 1.574649e-03	ci right 2.114902e-03	k: 183	n:100000
OR2T2   100000 perm   23 sec   (4372 perm/sec)   p_kst 1.830000e-03   p_cons 4.007400e-01   p_joint 6.600000e-03

Joint ci ratio: 1.163244e-01	ci left: 9.623445e-03	ci right 1.082077e-02	k: 1123	n:110000
Cons ci ratio: 1.445531e-02	ci left: 3.977659e-01	ci right 4.035666e-01	k: 44073	n:110000
KS ci ratio: 2.879604e-01	ci left: 1.439918e-03	ci right 1.932408e-03	k: 184	n:110000
OR2T2   110000 perm   26 sec   (4291 perm/sec)   p_kst 1.672727e-03   p_cons 4.006636e-01   p_joint 1.020909e-02

Joint ci ratio: 1.466785e-01	ci left: 5.482528e-03	ci right 6.358275e-03	k: 709	n:120000
Cons ci ratio: 1.381682e-02	ci left: 3.986914e-01	ci right 4.042467e-01	k: 48176	n:120000
KS ci ratio: 2.628486e-01	ci left: 1.607027e-03	ci right 2.100878e-03	k: 221	n:120000
OR2T2   120000 perm   28 sec   (4212 perm/sec)   p_kst 1.841667e-03   p_cons 4.014667e-01   p_joint 5.908333e-03

Joint ci ratio: 1.440830e-01	ci left: 5.253474e-03	ci right 6.076504e-03	k: 735	n:130000
Cons ci ratio: 1.325540e-02	ci left: 3.995021e-01	ci right 4.048407e-01	k: 52282	n:130000
KS ci ratio: 2.538622e-01	ci left: 1.598518e-03	ci right 2.070302e-03	k: 237	n:130000
OR2T2   130000 perm   31 sec   (4135 perm/sec)   p_kst 1.823077e-03   p_cons 4.021692e-01   p_joint 5.653846e-03

Joint ci ratio: 1.122504e-01	ci left: 8.150723e-03	ci right 9.126935e-03	k: 1208	n:140000
Cons ci ratio: 1.223173e-02	ci left: 4.205743e-01	ci right 4.257574e-01	k: 59243	n:140000
KS ci ratio: 2.419508e-01	ci left: 1.645127e-03	ci right 2.104469e-03	k: 261	n:140000
OR2T2   140000 perm   34 sec   (4062 perm/sec)   p_kst 1.864286e-03   p_cons 4.231643e-01   p_joint 8.628571e-03

Joint ci ratio: 1.106344e-01	ci left: 7.840581e-03	ci right 8.765243e-03	k: 1244	n:150000
Cons ci ratio: 1.180596e-02	ci left: 4.211176e-01	ci right 4.261254e-01	k: 63543	n:150000
KS ci ratio: 2.353116e-01	ci left: 1.629472e-03	ci right 2.070141e-03	k: 276	n:150000
OR2T2   150000 perm   38 sec   (3992 perm/sec)   p_kst 1.840000e-03   p_cons 4.236200e-01   p_joint 8.293333e-03

Joint ci ratio: 9.717163e-02	ci left: 9.579228e-03	ci right 1.056365e-02	k: 1610	n:160000
Cons ci ratio: 1.143433e-02	ci left: 4.210584e-01	ci right 4.259068e-01	k: 67757	n:160000
KS ci ratio: 2.272496e-01	ci left: 1.645391e-03	ci right 2.072983e-03	k: 296	n:160000
OR2T2   160000 perm   41 sec   (3925 perm/sec)   p_kst 1.850000e-03   p_cons 4.234812e-01   p_joint 1.006250e-02

Joint ci ratio: 1.016936e-01	ci left: 8.223860e-03	ci right 9.110665e-03	k: 1472	n:170000
Cons ci ratio: 1.110027e-02	ci left: 4.208086e-01	ci right 4.255116e-01	k: 71937	n:170000
KS ci ratio: 2.206616e-01	ci left: 1.648547e-03	ci right 2.062855e-03	k: 314	n:170000
OR2T2   170000 perm   44 sec   (3865 perm/sec)   p_kst 1.847059e-03   p_cons 4.231588e-01   p_joint 8.658824e-03

Joint ci ratio: 1.023862e-01	ci left: 7.664003e-03	ci right 8.496401e-03	k: 1453	n:180000
Cons ci ratio: 1.079030e-02	ci left: 4.207495e-01	ci right 4.253196e-01	k: 76146	n:180000
KS ci ratio: 2.172455e-01	ci left: 1.609466e-03	ci right 2.006854e-03	k: 324	n:180000
OR2T2   180000 perm   47 sec   (3803 perm/sec)   p_kst 1.800000e-03   p_cons 4.230333e-01   p_joint 8.072222e-03

Joint ci ratio: 1.021959e-01	ci left: 7.291334e-03	ci right 8.081693e-03	k: 1459	n:190000
Cons ci ratio: 1.049678e-02	ci left: 4.210769e-01	ci right 4.255254e-01	k: 80427	n:190000
KS ci ratio: 2.127146e-01	ci left: 1.594474e-03	ci right 1.978878e-03	k: 338	n:190000
OR2T2   190000 perm   51 sec   (3744 perm/sec)   p_kst 1.778947e-03   p_cons 4.233000e-01   p_joint 7.678947e-03

Joint ci ratio: 1.014830e-01	ci left: 7.029044e-03	ci right 7.785338e-03	k: 1480	n:200000
Cons ci ratio: 1.023089e-02	ci left: 4.211383e-01	ci right 4.254740e-01	k: 84661	n:200000
KS ci ratio: 2.093489e-01	ci left: 1.566841e-03	ci right 1.937840e-03	k: 349	n:200000
OR2T2   200000 perm   54 sec   (3687 perm/sec)   p_kst 1.745000e-03   p_cons 4.233050e-01   p_joint 7.400000e-03

Joint ci ratio: 9.701657e-02	ci left: 7.339864e-03	ci right 8.092867e-03	k: 1619	n:210000
Cons ci ratio: 9.988234e-03	ci left: 4.209999e-01	ci right 4.252308e-01	k: 88854	n:210000
KS ci ratio: 2.152923e-01	ci left: 1.406550e-03	ci right 1.750300e-03	k: 330	n:210000
OR2T2   210000 perm   58 sec   (3631 perm/sec)   p_kst 1.571429e-03   p_cons 4.231143e-01   p_joint 7.709524e-03

Joint ci ratio: 1.000652e-01	ci left: 6.580492e-03	ci right 7.278048e-03	k: 1523	n:220000
Cons ci ratio: 9.756062e-03	ci left: 4.211751e-01	ci right 4.253087e-01	k: 93113	n:220000
KS ci ratio: 2.096658e-01	ci left: 1.420082e-03	ci right 1.756905e-03	k: 348	n:220000
OR2T2   220000 perm   61 sec   (3578 perm/sec)   p_kst 1.581818e-03   p_cons 4.232409e-01   p_joint 6.922727e-03

Joint ci ratio: 9.695900e-02	ci left: 6.714237e-03	ci right 7.402621e-03	k: 1622	n:230000
Cons ci ratio: 9.718316e-03	ci left: 4.122944e-01	ci right 4.163251e-01	k: 95291	n:230000
KS ci ratio: 2.028048e-01	ci left: 1.457303e-03	ci right 1.790242e-03	k: 372	n:230000
OR2T2   230000 perm   65 sec   (3529 perm/sec)   p_kst 1.617391e-03   p_cons 4.143087e-01   p_joint 7.052174e-03

Joint ci ratio: 1.017191e-01	ci left: 5.837050e-03	ci right 6.466633e-03	k: 1475	n:240000
Cons ci ratio: 9.509216e-03	ci left: 4.125655e-01	ci right 4.165115e-01	k: 99489	n:240000
KS ci ratio: 1.915660e-01	ci left: 1.574841e-03	ci right 1.912375e-03	k: 417	n:240000
OR2T2   240000 perm   69 sec   (3481 perm/sec)   p_kst 1.737500e-03   p_cons 4.145375e-01   p_joint 6.145833e-03

Joint ci ratio: 9.523057e-02	ci left: 6.411283e-03	ci right 7.056233e-03	k: 1682	n:250000
Cons ci ratio: 9.322192e-03	ci left: 4.123401e-01	ci right 4.162059e-01	k: 103568	n:250000
KS ci ratio: 1.911153e-01	ci left: 1.519460e-03	ci right 1.844268e-03	k: 419	n:250000
OR2T2   250000 perm   73 sec   (3436 perm/sec)   p_kst 1.676000e-03   p_cons 4.142720e-01   p_joint 6.728000e-03

Joint ci ratio: 9.555781e-02	ci left: 6.123353e-03	ci right 6.741573e-03	k: 1671	n:260000
Cons ci ratio: 9.142520e-03	ci left: 4.123056e-01	ci right 4.160963e-01	k: 107692	n:260000
KS ci ratio: 1.867201e-01	ci left: 1.534305e-03	ci right 1.853890e-03	k: 439	n:260000
OR2T2   260000 perm   77 sec   (3390 perm/sec)   p_kst 1.688462e-03   p_cons 4.142000e-01   p_joint 6.426923e-03

Joint ci ratio: 9.505577e-02	ci left: 5.961616e-03	ci right 6.560167e-03	k: 1689	n:270000
Cons ci ratio: 8.971825e-03	ci left: 4.123300e-01	ci right 4.160496e-01	k: 111831	n:270000
KS ci ratio: 1.834154e-01	ci left: 1.533993e-03	ci right 1.847229e-03	k: 455	n:270000
OR2T2   270000 perm   81 sec   (3346 perm/sec)   p_kst 1.685185e-03   p_cons 4.141889e-01   p_joint 6.255556e-03

Joint ci ratio: 9.762742e-02	ci left: 5.445402e-03	ci right 6.007760e-03	k: 1602	n:280000
Cons ci ratio: 8.811190e-03	ci left: 4.123068e-01	ci right 4.159593e-01	k: 115957	n:280000
KS ci ratio: 1.789558e-01	ci left: 1.557627e-03	ci right 1.867119e-03	k: 478	n:280000
OR2T2   280000 perm   85 sec   (3303 perm/sec)   p_kst 1.707143e-03   p_cons 4.141321e-01   p_joint 5.721429e-03

Joint ci ratio: 9.593669e-02	ci left: 5.449424e-03	ci right 6.001904e-03	k: 1659	n:290000
Cons ci ratio: 8.661346e-03	ci left: 4.121479e-01	ci right 4.157366e-01	k: 120043	n:290000
KS ci ratio: 1.758623e-01	ci left: 1.559934e-03	ci right 1.863956e-03	k: 495	n:290000
OR2T2   290000 perm   89 sec   (3261 perm/sec)   p_kst 1.706897e-03   p_cons 4.139414e-01   p_joint 5.720690e-03

Joint ci ratio: 9.554161e-02	ci left: 5.313308e-03	ci right 5.849645e-03	k: 1673	n:300000
Cons ci ratio: 8.515267e-03	ci left: 4.122067e-01	ci right 4.157350e-01	k: 124191	n:300000
KS ci ratio: 1.727553e-01	ci left: 1.565319e-03	ci right 1.864439e-03	k: 513	n:300000
OR2T2   300000 perm   93 sec   (3219 perm/sec)   p_kst 1.710000e-03   p_cons 4.139700e-01   p_joint 5.576667e-03

Joint ci ratio: 9.417431e-02	ci left: 5.296223e-03	ci right 5.822762e-03	k: 1722	n:310000
Cons ci ratio: 8.375056e-03	ci left: 4.123363e-01	ci right 4.158073e-01	k: 128362	n:310000
KS ci ratio: 1.701280e-01	ci left: 1.564223e-03	ci right 1.858121e-03	k: 529	n:310000
OR2T2   310000 perm   97 sec   (3180 perm/sec)   p_kst 1.706452e-03   p_cons 4.140710e-01   p_joint 5.554839e-03

Joint ci ratio: 9.482094e-02	ci left: 5.060511e-03	ci right 5.567261e-03	k: 1699	n:320000
Cons ci ratio: 8.240012e-03	ci left: 4.125488e-01	ci right 4.159653e-01	k: 132562	n:320000
KS ci ratio: 1.673104e-01	ci left: 1.569216e-03	ci right 1.858678e-03	k: 547	n:320000
OR2T2   320000 perm   102 sec   (3144 perm/sec)   p_kst 1.709375e-03   p_cons 4.142562e-01   p_joint 5.309375e-03

Joint ci ratio: 9.496910e-02	ci left: 4.892350e-03	ci right 5.383069e-03	k: 1694	n:330000
Cons ci ratio: 8.111751e-03	ci left: 4.127215e-01	ci right 4.160860e-01	k: 136753	n:330000
KS ci ratio: 1.655094e-01	ci left: 1.556512e-03	ci right 1.840232e-03	k: 559	n:330000
OR2T2   330000 perm   106 sec   (3107 perm/sec)   p_kst 1.693939e-03   p_cons 4.144030e-01   p_joint 5.133333e-03

Joint ci ratio: 9.710053e-02	ci left: 4.538867e-03	ci right 5.004929e-03	k: 1621	n:340000
Cons ci ratio: 7.991621e-03	ci left: 4.127434e-01	ci right 4.160580e-01	k: 140896	n:340000
KS ci ratio: 1.630530e-01	ci left: 1.558677e-03	ci right 1.838161e-03	k: 576	n:340000
OR2T2   340000 perm   111 sec   (3070 perm/sec)   p_kst 1.694118e-03   p_cons 4.144000e-01   p_joint 4.767647e-03

Joint ci ratio: 8.285789e-02	ci left: 6.090906e-03	ci right 6.620175e-03	k: 2223	n:350000
Cons ci ratio: 8.093382e-03	ci left: 3.996641e-01	ci right 4.029147e-01	k: 140451	n:350000
KS ci ratio: 1.537305e-01	ci left: 1.711721e-03	ci right 1.999484e-03	k: 648	n:350000
OR2T2   350000 perm   115 sec   (3034 perm/sec)   p_kst 1.851429e-03   p_cons 4.012886e-01   p_joint 6.351429e-03

Joint ci ratio: 8.887399e-02	ci left: 5.136038e-03	ci right 5.616421e-03	k: 1934	n:360000
Cons ci ratio: 7.979809e-03	ci left: 3.997093e-01	ci right 4.029145e-01	k: 144472	n:360000
KS ci ratio: 1.518704e-01	ci left: 1.706918e-03	ci right 1.990086e-03	k: 664	n:360000
OR2T2   360000 perm   120 sec   (2999 perm/sec)   p_kst 1.844444e-03   p_cons 4.013111e-01   p_joint 5.372222e-03

Joint ci ratio: 8.739456e-02	ci left: 5.171677e-03	ci right 5.646930e-03	k: 2000	n:370000
Cons ci ratio: 7.854796e-03	ci left: 4.007356e-01	ci right 4.038984e-01	k: 148857	n:370000
KS ci ratio: 1.496366e-01	ci left: 1.712800e-03	ci right 1.992391e-03	k: 684	n:370000
OR2T2   370000 perm   125 sec   (2964 perm/sec)   p_kst 1.848649e-03   p_cons 4.023162e-01   p_joint 5.405405e-03

Joint ci ratio: 8.722570e-02	ci left: 5.056160e-03	ci right 5.519854e-03	k: 2008	n:380000
Cons ci ratio: 7.754624e-03	ci left: 4.005168e-01	ci right 4.036373e-01	k: 152789	n:380000
KS ci ratio: 1.485578e-01	ci left: 1.693059e-03	ci right 1.967258e-03	k: 694	n:380000
OR2T2   380000 perm   130 sec   (2931 perm/sec)   p_kst 1.826316e-03   p_cons 4.020763e-01   p_joint 5.284211e-03

Joint ci ratio: 8.671254e-02	ci left: 4.986708e-03	ci right 5.441204e-03	k: 2032	n:390000
Cons ci ratio: 7.652796e-03	ci left: 4.006477e-01	ci right 4.037281e-01	k: 156853	n:390000
KS ci ratio: 1.473974e-01	ci left: 1.676807e-03	ci right 1.946065e-03	k: 705	n:390000
OR2T2   390000 perm   135 sec   (2899 perm/sec)   p_kst 1.807692e-03   p_cons 4.021872e-01   p_joint 5.210256e-03

Joint ci ratio: 7.944382e-02	ci left: 5.809570e-03	ci right 6.292628e-03	k: 2419	n:400000
Cons ci ratio: 7.559906e-03	ci left: 4.004525e-01	ci right 4.034939e-01	k: 160789	n:400000
KS ci ratio: 1.457554e-01	ci left: 1.673420e-03	ci right 1.938880e-03	k: 721	n:400000
OR2T2   400000 perm   139 sec   (2868 perm/sec)   p_kst 1.802500e-03   p_cons 4.019725e-01   p_joint 6.047500e-03

Joint ci ratio: 8.386905e-02	ci left: 5.077645e-03	ci right 5.524512e-03	k: 2172	n:410000
Cons ci ratio: 7.470354e-03	ci left: 4.002647e-01	ci right 4.032684e-01	k: 164724	n:410000
KS ci ratio: 1.465743e-01	ci left: 1.613803e-03	ci right 1.871370e-03	k: 713	n:410000
OR2T2   410000 perm   145 sec   (2837 perm/sec)   p_kst 1.739024e-03   p_cons 4.017659e-01   p_joint 5.297561e-03

Joint ci ratio: 8.337446e-02	ci left: 5.017352e-03	ci right 5.456182e-03	k: 2198	n:420000
Cons ci ratio: 7.379083e-03	ci left: 4.004001e-01	ci right 4.033679e-01	k: 168791	n:420000
KS ci ratio: 1.446619e-01	ci left: 1.618969e-03	ci right 1.873698e-03	k: 732	n:420000
OR2T2   420000 perm   150 sec   (2806 perm/sec)   p_kst 1.742857e-03   p_cons 4.018833e-01   p_joint 5.233333e-03

Joint ci ratio: 8.317073e-02	ci left: 4.925709e-03	ci right 5.355419e-03	k: 2209	n:430000
Cons ci ratio: 7.296158e-03	ci left: 4.001947e-01	ci right 4.031276e-01	k: 172714	n:430000
KS ci ratio: 1.436864e-01	ci left: 1.603735e-03	ci right 1.854219e-03	k: 742	n:430000
OR2T2   430000 perm   155 sec   (2775 perm/sec)   p_kst 1.725581e-03   p_cons 4.016605e-01   p_joint 5.137209e-03

Joint ci ratio: 8.230061e-02	ci left: 4.918368e-03	ci right 5.342734e-03	k: 2256	n:440000
Cons ci ratio: 7.213133e-03	ci left: 4.001874e-01	ci right 4.030867e-01	k: 176720	n:440000
KS ci ratio: 1.422580e-01	ci left: 1.600157e-03	ci right 1.847387e-03	k: 757	n:440000
OR2T2   440000 perm   160 sec   (2744 perm/sec)   p_kst 1.720455e-03   p_cons 4.016364e-01   p_joint 5.127273e-03

Joint ci ratio: 8.181494e-02	ci left: 4.867835e-03	ci right 5.285244e-03	k: 2283	n:450000
Cons ci ratio: 7.131230e-03	ci left: 4.002916e-01	ci right 4.031586e-01	k: 180776	n:450000
KS ci ratio: 1.405983e-01	ci left: 1.603183e-03	ci right 1.847749e-03	k: 775	n:450000
OR2T2   450000 perm   166 sec   (2715 perm/sec)   p_kst 1.722222e-03   p_cons 4.017244e-01   p_joint 5.073333e-03

Joint ci ratio: 8.339355e-02	ci left: 4.581018e-03	ci right 4.981780e-03	k: 2198	n:460000
Cons ci ratio: 7.052853e-03	ci left: 4.003371e-01	ci right 4.031728e-01	k: 184807	n:460000
KS ci ratio: 1.388203e-01	ci left: 1.610290e-03	ci right 1.852577e-03	k: 795	n:460000
OR2T2   460000 perm   171 sec   (2687 perm/sec)   p_kst 1.728261e-03   p_cons 4.017543e-01   p_joint 4.778261e-03

Joint ci ratio: 8.360817e-02	ci left: 4.460623e-03	ci right 4.851905e-03	k: 2187	n:470000
Cons ci ratio: 6.976356e-03	ci left: 4.004256e-01	ci right 4.032310e-01	k: 188859	n:470000
KS ci ratio: 1.375309e-01	ci left: 1.606840e-03	ci right 1.846178e-03	k: 810	n:470000
OR2T2   470000 perm   177 sec   (2660 perm/sec)   p_kst 1.723404e-03   p_cons 4.018277e-01   p_joint 4.653191e-03

Joint ci ratio: 8.462848e-02	ci left: 4.261620e-03	ci right 4.640233e-03	k: 2135	n:480000
Cons ci ratio: 6.902355e-03	ci left: 4.005063e-01	ci right 4.032824e-01	k: 192909	n:480000
KS ci ratio: 1.361117e-01	ci left: 1.607569e-03	ci right 1.844344e-03	k: 827	n:480000
OR2T2   480000 perm   182 sec   (2633 perm/sec)   p_kst 1.722917e-03   p_cons 4.018937e-01   p_joint 4.447917e-03

Joint ci ratio: 8.406111e-02	ci left: 4.232581e-03	ci right 4.605969e-03	k: 2164	n:490000
Cons ci ratio: 6.833647e-03	ci left: 4.003738e-01	ci right 4.031212e-01	k: 196856	n:490000
KS ci ratio: 1.352982e-01	ci left: 1.594476e-03	ci right 1.827806e-03	k: 837	n:490000
OR2T2   490000 perm   188 sec   (2607 perm/sec)   p_kst 1.708163e-03   p_cons 4.017469e-01   p_joint 4.416327e-03

Joint ci ratio: 8.301238e-02	ci left: 4.255633e-03	ci right 4.626145e-03	k: 2219	n:500000
Cons ci ratio: 6.763600e-03	ci left: 4.004846e-01	ci right 4.032045e-01	k: 200922	n:500000
KS ci ratio: 1.335558e-01	ci left: 1.605107e-03	ci right 1.836728e-03	k: 859	n:500000
OR2T2   500000 perm   194 sec   (2580 perm/sec)   p_kst 1.718000e-03   p_cons 4.018440e-01   p_joint 4.438000e-03

Joint ci ratio: 8.227484e-02	ci left: 4.248999e-03	ci right 4.615489e-03	k: 2259	n:510000
Cons ci ratio: 6.695581e-03	ci left: 4.005971e-01	ci right 4.032903e-01	k: 204991	n:510000
KS ci ratio: 1.318790e-01	ci left: 1.615340e-03	ci right 1.845282e-03	k: 881	n:510000
OR2T2   510000 perm   200 sec   (2555 perm/sec)   p_kst 1.727451e-03   p_cons 4.019431e-01   p_joint 4.429412e-03

Joint ci ratio: 8.137910e-02	ci left: 4.261475e-03	ci right 4.624849e-03	k: 2309	n:520000
Cons ci ratio: 6.632757e-03	ci left: 4.004748e-01	ci right 4.031417e-01	k: 208940	n:520000
KS ci ratio: 1.304808e-01	ci left: 1.619615e-03	ci right 1.847532e-03	k: 900	n:520000
OR2T2   520000 perm   206 sec   (2530 perm/sec)   p_kst 1.730769e-03   p_cons 4.018077e-01   p_joint 4.440385e-03

Joint ci ratio: 8.110091e-02	ci left: 4.210641e-03	ci right 4.568395e-03	k: 2325	n:530000
Cons ci ratio: 6.571126e-03	ci left: 4.003967e-01	ci right 4.030383e-01	k: 212910	n:530000
KS ci ratio: 1.292671e-01	ci left: 1.620090e-03	ci right 1.845790e-03	k: 917	n:530000
OR2T2   530000 perm   212 sec   (2505 perm/sec)   p_kst 1.730189e-03   p_cons 4.017170e-01   p_joint 4.386792e-03

Joint ci ratio: 8.084284e-02	ci left: 4.159877e-03	ci right 4.512140e-03	k: 2340	n:540000
Cons ci ratio: 6.511132e-03	ci left: 4.003254e-01	ci right 4.029423e-01	k: 216882	n:540000
KS ci ratio: 1.280180e-01	ci left: 1.622349e-03	ci right 1.846014e-03	k: 935	n:540000
OR2T2   540000 perm   218 sec   (2481 perm/sec)   p_kst 1.731481e-03   p_cons 4.016333e-01   p_joint 4.333333e-03

Joint ci ratio: 8.021191e-02	ci left: 4.150160e-03	ci right 4.498729e-03	k: 2377	n:550000
Cons ci ratio: 6.449651e-03	ci left: 4.004876e-01	ci right 4.030807e-01	k: 220981	n:550000
KS ci ratio: 1.270716e-01	ci left: 1.617494e-03	ci right 1.838717e-03	k: 949	n:550000
OR2T2   550000 perm   224 sec   (2457 perm/sec)   p_kst 1.725455e-03   p_cons 4.017836e-01   p_joint 4.321818e-03

Joint ci ratio: 7.989511e-02	ci left: 4.109296e-03	ci right 4.453006e-03	k: 2396	n:560000
Cons ci ratio: 6.392562e-03	ci left: 4.004424e-01	ci right 4.030122e-01	k: 224967	n:560000
KS ci ratio: 1.257544e-01	ci left: 1.623195e-03	ci right 1.842725e-03	k: 969	n:560000
OR2T2   560000 perm   230 sec   (2433 perm/sec)   p_kst 1.730357e-03   p_cons 4.017268e-01   p_joint 4.278571e-03

Joint ci ratio: 7.920428e-02	ci left: 4.109422e-03	ci right 4.450033e-03	k: 2438	n:570000
Cons ci ratio: 6.336500e-03	ci left: 4.004340e-01	ci right 4.029811e-01	k: 228973	n:570000
KS ci ratio: 1.247301e-01	ci left: 1.621909e-03	ci right 1.839346e-03	k: 985	n:570000
OR2T2   570000 perm   237 sec   (2410 perm/sec)   p_kst 1.728070e-03   p_cons 4.017070e-01   p_joint 4.277193e-03

Joint ci ratio: 7.504151e-02	ci left: 4.506985e-03	ci right 4.860060e-03	k: 2715	n:580000
Cons ci ratio: 6.282473e-03	ci left: 4.003811e-01	ci right 4.029061e-01	k: 232953	n:580000
KS ci ratio: 1.236069e-01	ci left: 1.624015e-03	ci right 1.839631e-03	k: 1003	n:580000
OR2T2   580000 perm   243 sec   (2386 perm/sec)   p_kst 1.729310e-03   p_cons 4.016431e-01   p_joint 4.681034e-03

Joint ci ratio: 7.434647e-02	ci left: 4.515422e-03	ci right 4.865740e-03	k: 2766	n:590000
Cons ci ratio: 6.228509e-03	ci left: 4.004301e-01	ci right 4.029336e-01	k: 236992	n:590000
KS ci ratio: 1.223337e-01	ci left: 1.630988e-03	ci right 1.845138e-03	k: 1024	n:590000
OR2T2   590000 perm   249 sec   (2365 perm/sec)   p_kst 1.735593e-03   p_cons 4.016814e-01   p_joint 4.688136e-03

Joint ci ratio: 7.485384e-02	ci left: 4.379637e-03	ci right 4.721840e-03	k: 2729	n:600000
Cons ci ratio: 6.175483e-03	ci left: 4.005108e-01	ci right 4.029935e-01	k: 241051	n:600000
KS ci ratio: 1.213317e-01	ci left: 1.631275e-03	ci right 1.843582e-03	k: 1041	n:600000
OR2T2   600000 perm   256 sec   (2344 perm/sec)   p_kst 1.735000e-03   p_cons 4.017517e-01   p_joint 4.548333e-03

Joint ci ratio: 7.403038e-02	ci left: 4.405981e-03	ci right 4.746292e-03	k: 2790	n:610000
Cons ci ratio: 6.122913e-03	ci left: 4.006578e-01	ci right 4.031202e-01	k: 245152	n:610000
KS ci ratio: 1.200139e-01	ci left: 1.641100e-03	ci right 1.852201e-03	k: 1064	n:610000
OR2T2   610000 perm   262 sec   (2324 perm/sec)   p_kst 1.744262e-03   p_cons 4.018885e-01   p_joint 4.573770e-03

Joint ci ratio: 7.428756e-02	ci left: 4.304831e-03	ci right 4.638535e-03	k: 2771	n:620000
Cons ci ratio: 6.073005e-03	ci left: 4.006938e-01	ci right 4.031362e-01	k: 249187	n:620000
KS ci ratio: 1.191225e-01	ci left: 1.639665e-03	ci right 1.848905e-03	k: 1080	n:620000
OR2T2   620000 perm   269 sec   (2304 perm/sec)   p_kst 1.741935e-03   p_cons 4.019145e-01   p_joint 4.469355e-03

Joint ci ratio: 7.077298e-02	ci left: 4.674478e-03	ci right 5.018989e-03	k: 3052	n:630000
Cons ci ratio: 6.024120e-03	ci left: 4.007429e-01	ci right 4.031659e-01	k: 253231	n:630000
KS ci ratio: 1.180354e-01	ci left: 1.644444e-03	ci right 1.852245e-03	k: 1100	n:630000
OR2T2   630000 perm   276 sec   (2284 perm/sec)   p_kst 1.746032e-03   p_cons 4.019540e-01   p_joint 4.844444e-03

Joint ci ratio: 7.641192e-02	ci left: 3.938784e-03	ci right 4.253231e-03	k: 2620	n:640000
Cons ci ratio: 5.976416e-03	ci left: 4.007891e-01	ci right 4.031931e-01	k: 257274	n:640000
KS ci ratio: 1.179833e-01	ci left: 1.620264e-03	ci right 1.824913e-03	k: 1101	n:640000
OR2T2   640000 perm   283 sec   (2264 perm/sec)   p_kst 1.720313e-03   p_cons 4.019906e-01   p_joint 4.093750e-03

Joint ci ratio: 7.569281e-02	ci left: 3.953649e-03	ci right 4.266181e-03	k: 2670	n:650000
Cons ci ratio: 5.931213e-03	ci left: 4.007216e-01	ci right 4.031070e-01	k: 261244	n:650000
KS ci ratio: 1.168747e-01	ci left: 1.626696e-03	ci right 1.830094e-03	k: 1122	n:650000
OR2T2   650000 perm   290 sec   (2244 perm/sec)   p_kst 1.726154e-03   p_cons 4.019138e-01   p_joint 4.107692e-03

Joint ci ratio: 7.517417e-02	ci left: 3.948748e-03	ci right 4.258660e-03	k: 2707	n:660000
Cons ci ratio: 5.886760e-03	ci left: 4.006775e-01	ci right 4.030446e-01	k: 265228	n:660000
KS ci ratio: 1.162044e-01	ci left: 1.621172e-03	ci right 1.822636e-03	k: 1135	n:660000
OR2T2   660000 perm   297 sec   (2225 perm/sec)   p_kst 1.719697e-03   p_cons 4.018606e-01   p_joint 4.101515e-03

Joint ci ratio: 7.316887e-02	ci left: 4.109552e-03	ci right 4.423116e-03	k: 2857	n:670000
Cons ci ratio: 5.842203e-03	ci left: 4.007242e-01	ci right 4.030736e-01	k: 269272	n:670000
KS ci ratio: 1.150451e-01	ci left: 1.630311e-03	ci right 1.830753e-03	k: 1158	n:670000
OR2T2   670000 perm   304 sec   (2205 perm/sec)   p_kst 1.728358e-03   p_cons 4.018985e-01   p_joint 4.264179e-03

Joint ci ratio: 7.273796e-02	ci left: 4.098205e-03	ci right 4.408983e-03	k: 2891	n:680000
Cons ci ratio: 5.800684e-03	ci left: 4.006006e-01	ci right 4.029326e-01	k: 273201	n:680000
KS ci ratio: 1.141619e-01	ci left: 1.632048e-03	ci right 1.831059e-03	k: 1176	n:680000
OR2T2   680000 perm   311 sec   (2187 perm/sec)   p_kst 1.729412e-03   p_cons 4.017662e-01   p_joint 4.251471e-03

Joint ci ratio: 7.214145e-02	ci left: 4.107116e-03	ci right 4.415909e-03	k: 2939	n:690000
Cons ci ratio: 5.758543e-03	ci left: 4.006052e-01	ci right 4.029202e-01	k: 277216	n:690000
KS ci ratio: 1.136327e-01	ci left: 1.623883e-03	ci right 1.820918e-03	k: 1187	n:690000
OR2T2   690000 perm   318 sec   (2168 perm/sec)   p_kst 1.720290e-03   p_cons 4.017623e-01   p_joint 4.259420e-03

Joint ci ratio: 7.236646e-02	ci left: 4.023187e-03	ci right 4.326653e-03	k: 2921	n:700000
Cons ci ratio: 5.717460e-03	ci left: 4.005969e-01	ci right 4.028953e-01	k: 281222	n:700000
KS ci ratio: 1.125946e-01	ci left: 1.631224e-03	ci right 1.827222e-03	k: 1209	n:700000
OR2T2   700000 perm   326 sec   (2150 perm/sec)   p_kst 1.727143e-03   p_cons 4.017457e-01   p_joint 4.172857e-03

Joint ci ratio: 7.190064e-02	ci left: 4.019078e-03	ci right 4.320201e-03	k: 2959	n:710000
Cons ci ratio: 5.677194e-03	ci left: 4.005932e-01	ci right 4.028752e-01	k: 285231	n:710000
KS ci ratio: 1.119949e-01	ci left: 1.626044e-03	ci right 1.820311e-03	k: 1222	n:710000
OR2T2   710000 perm   333 sec   (2133 perm/sec)   p_kst 1.721127e-03   p_cons 4.017338e-01   p_joint 4.167606e-03

Joint ci ratio: 7.175682e-02	ci left: 3.979622e-03	ci right 4.277167e-03	k: 2971	n:720000
Cons ci ratio: 5.637670e-03	ci left: 4.005979e-01	ci right 4.028640e-01	k: 289246	n:720000
KS ci ratio: 1.113145e-01	ci left: 1.623712e-03	ci right 1.816444e-03	k: 1237	n:720000
OR2T2   720000 perm   340 sec   (2116 perm/sec)   p_kst 1.718056e-03   p_cons 4.017306e-01   p_joint 4.126389e-03

Joint ci ratio: 7.138599e-02	ci left: 3.966811e-03	ci right 4.261803e-03	k: 3002	n:730000
Cons ci ratio: 5.598385e-03	ci left: 4.006518e-01	ci right 4.029024e-01	k: 293297	n:730000
KS ci ratio: 1.106464e-01	ci left: 1.621447e-03	ci right 1.812679e-03	k: 1252	n:730000
OR2T2   730000 perm   348 sec   (2099 perm/sec)   p_kst 1.715068e-03   p_cons 4.017767e-01   p_joint 4.112329e-03

Joint ci ratio: 7.088024e-02	ci left: 3.970280e-03	ci right 4.263352e-03	k: 3045	n:740000
Cons ci ratio: 5.560895e-03	ci left: 4.006192e-01	ci right 4.028545e-01	k: 297285	n:740000
KS ci ratio: 1.099033e-01	ci left: 1.621875e-03	ci right 1.811790e-03	k: 1269	n:740000
OR2T2   740000 perm   355 sec   (2082 perm/sec)   p_kst 1.714865e-03   p_cons 4.017365e-01   p_joint 4.114865e-03

Joint ci ratio: 7.048827e-02	ci left: 3.961875e-03	ci right 4.252643e-03	k: 3079	n:750000
Cons ci ratio: 5.524087e-03	ci left: 4.005929e-01	ci right 4.028132e-01	k: 301277	n:750000
KS ci ratio: 1.090479e-01	ci left: 1.626186e-03	ci right 1.815029e-03	k: 1289	n:750000
OR2T2   750000 perm   363 sec   (2065 perm/sec)   p_kst 1.718667e-03   p_cons 4.017027e-01   p_joint 4.105333e-03

Joint ci ratio: 6.996749e-02	ci left: 3.969209e-03	ci right 4.258275e-03	k: 3125	n:760000
Cons ci ratio: 5.485777e-03	ci left: 4.007619e-01	ci right 4.029678e-01	k: 305417	n:760000
KS ci ratio: 1.082949e-01	ci left: 1.627830e-03	ci right 1.815475e-03	k: 1307	n:760000
OR2T2   760000 perm   371 sec   (2048 perm/sec)   p_kst 1.719737e-03   p_cons 4.018645e-01   p_joint 4.111842e-03

Joint ci ratio: 6.980141e-02	ci left: 3.936798e-03	ci right 4.222796e-03	k: 3140	n:770000
Cons ci ratio: 5.451580e-03	ci left: 4.006333e-01	ci right 4.028246e-01	k: 309331	n:770000
KS ci ratio: 1.075573e-01	ci left: 1.629435e-03	ci right 1.815905e-03	k: 1325	n:770000
OR2T2   770000 perm   379 sec   (2031 perm/sec)   p_kst 1.720779e-03   p_cons 4.017286e-01   p_joint 4.077922e-03

Joint ci ratio: 6.878814e-02	ci left: 4.003496e-03	ci right 4.289949e-03	k: 3233	n:780000
Cons ci ratio: 5.415168e-03	ci left: 4.007604e-01	ci right 4.029377e-01	k: 313442	n:780000
KS ci ratio: 1.067153e-01	ci left: 1.634746e-03	ci right 1.820268e-03	k: 1346	n:780000
OR2T2   780000 perm   387 sec   (2015 perm/sec)   p_kst 1.725641e-03   p_cons 4.018487e-01   p_joint 4.144872e-03

Joint ci ratio: 6.825167e-02	ci left: 4.016271e-03	ci right 4.301308e-03	k: 3284	n:790000
Cons ci ratio: 5.381104e-03	ci left: 4.007389e-01	ci right 4.029023e-01	k: 317438	n:790000
KS ci ratio: 1.054689e-01	ci left: 1.653486e-03	ci right 1.838806e-03	k: 1378	n:790000
OR2T2   790000 perm   395 sec   (2000 perm/sec)   p_kst 1.744304e-03   p_cons 4.018203e-01   p_joint 4.156962e-03

Joint ci ratio: 6.838946e-02	ci left: 3.950090e-03	ci right 4.231019e-03	k: 3271	n:800000
Cons ci ratio: 5.346939e-03	ci left: 4.007841e-01	ci right 4.029341e-01	k: 321487	n:800000
KS ci ratio: 1.048624e-01	ci left: 1.652291e-03	ci right 1.836347e-03	k: 1394	n:800000
OR2T2   800000 perm   403 sec   (1984 perm/sec)   p_kst 1.742500e-03   p_cons 4.018587e-01   p_joint 4.088750e-03

Joint ci ratio: 6.944321e-02	ci left: 3.782410e-03	ci right 4.055725e-03	k: 3173	n:810000
Cons ci ratio: 5.313661e-03	ci left: 4.008061e-01	ci right 4.029427e-01	k: 325518	n:810000
KS ci ratio: 1.043775e-01	ci left: 1.647522e-03	ci right 1.830145e-03	k: 1407	n:810000
OR2T2   810000 perm   411 sec   (1969 perm/sec)   p_kst 1.737037e-03   p_cons 4.018741e-01   p_joint 3.917284e-03

Joint ci ratio: 6.898815e-02	ci left: 3.786616e-03	ci right 4.058370e-03	k: 3215	n:820000
Cons ci ratio: 5.281145e-03	ci left: 4.008142e-01	ci right 4.029377e-01	k: 329538	n:820000
KS ci ratio: 1.034625e-01	ci left: 1.657126e-03	ci right 1.839106e-03	k: 1432	n:820000
OR2T2   820000 perm   420 sec   (1954 perm/sec)   p_kst 1.746341e-03   p_cons 4.018756e-01   p_joint 3.920732e-03

Joint ci ratio: 6.882883e-02	ci left: 3.758753e-03	ci right 4.027860e-03	k: 3230	n:830000
Cons ci ratio: 5.249718e-03	ci left: 4.007763e-01	ci right 4.028870e-01	k: 333520	n:830000
KS ci ratio: 1.027124e-01	ci left: 1.661809e-03	ci right 1.842901e-03	k: 1453	n:830000
OR2T2   830000 perm   428 sec   (1939 perm/sec)   p_kst 1.750602e-03   p_cons 4.018313e-01   p_joint 3.891566e-03

Joint ci ratio: 6.837518e-02	ci left: 3.764319e-03	ci right 4.031977e-03	k: 3273	n:840000
Cons ci ratio: 5.217773e-03	ci left: 4.008382e-01	ci right 4.029363e-01	k: 337585	n:840000
KS ci ratio: 1.017368e-01	ci left: 1.674508e-03	ci right 1.855147e-03	k: 1481	n:840000
OR2T2   840000 perm   436 sec   (1925 perm/sec)   p_kst 1.763095e-03   p_cons 4.018869e-01   p_joint 3.896429e-03

Joint ci ratio: 6.817844e-02	ci left: 3.742003e-03	ci right 4.007278e-03	k: 3292	n:850000
Cons ci ratio: 5.186950e-03	ci left: 4.008481e-01	ci right 4.029338e-01	k: 341607	n:850000
KS ci ratio: 1.011922e-01	ci left: 1.673153e-03	ci right 1.852622e-03	k: 1497	n:850000
OR2T2   850000 perm   445 sec   (1911 perm/sec)   p_kst 1.761176e-03   p_cons 4.018906e-01   p_joint 3.872941e-03

Joint ci ratio: 6.778847e-02	ci left: 3.741926e-03	ci right 4.005619e-03	k: 3330	n:860000
Cons ci ratio: 5.156591e-03	ci left: 4.008647e-01	ci right 4.029383e-01	k: 345635	n:860000
KS ci ratio: 1.006561e-01	ci left: 1.671833e-03	ci right 1.850154e-03	k: 1513	n:860000
OR2T2   860000 perm   453 sec   (1897 perm/sec)   p_kst 1.759302e-03   p_cons 4.019012e-01   p_joint 3.872093e-03

Joint ci ratio: 6.723502e-02	ci left: 3.761068e-03	ci right 4.023862e-03	k: 3385	n:870000
Cons ci ratio: 5.126846e-03	ci left: 4.008730e-01	ci right 4.029346e-01	k: 349656	n:870000
KS ci ratio: 9.967275e-02	ci left: 1.686236e-03	ci right 1.864234e-03	k: 1543	n:870000
OR2T2   870000 perm   462 sec   (1883 perm/sec)   p_kst 1.773563e-03   p_cons 4.019034e-01   p_joint 3.890805e-03

Outputting figure to mutsig2_images.part000000000121/OR2T2.7_979_870000_0.0017736_0.4019_0.0038908.png
                gene_name: OR2T2
               theta_stop: 0.100 
                    nperm: 870000 
                     p_ks: 0.0018 
        ci_ks_bounds_left: 0.0017 
       ci_ks_bounds_right: 0.0019 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.0039 
     ci_joint_bounds_left: 0.0038 
    ci_joint_bounds_right: 0.0040 

Current progress: 29 percent done.
OR2T34
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.951351e-02	ci left: 3.756466e-01	ci right 3.948203e-01	k: 3852	n:10000
Cons ci ratio: 8.710826e-02	ci left: 1.610145e-01	ci right 1.757792e-01	k: 1683	n:10000
KS ci ratio: 3.579098e-02	ci left: 5.354785e-01	ci right 5.550951e-01	k: 5453	n:10000
OR2T34   10000 perm   2 sec   (5724 perm/sec)   p_kst 5.453000e-01   p_cons 1.683000e-01   p_joint 3.852000e-01

Outputting figure to mutsig2_images.part000000000121/OR2T34.7_961_10000_0.5453_0.1683_0.3852.png
                gene_name: OR2T34
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.39 

Current progress: 31 percent done.
OR2W5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.382332e-02	ci left: 4.346283e-01	ci right 4.542041e-01	k: 4444	n:10000
Cons ci ratio: 1.355138e-02	ci left: 8.870840e-01	ci right 8.992859e-01	k: 8933	n:10000
KS ci ratio: 7.130045e-02	ci left: 2.237558e-01	ci right 2.404006e-01	k: 2320	n:10000
OR2W5   10000 perm   2 sec   (5750 perm/sec)   p_kst 2.320000e-01   p_cons 8.933000e-01   p_joint 4.444000e-01

Outputting figure to mutsig2_images.part000000000121/OR2W5.7_967_10000_0.232_0.8933_0.4444.png
                gene_name: OR2W5
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 32 percent done.
OR4C13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.972318e-02	ci left: 3.736565e-01	ci right 3.928116e-01	k: 3832	n:10000
KS ci ratio: 1.612577e-02	ci left: 8.482515e-01	ci right 8.621409e-01	k: 8553	n:10000
OR4C13   10000 perm   2 sec   (5381 perm/sec)   p_kst 8.553000e-01   p_cons 3.832000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000121/OR4C13.7_934_10000_0.8553_0.3832_1.png
                gene_name: OR4C13
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 33 percent done.
OR4C15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.289058e-02	ci left: 5.770748e-01	ci right 5.964746e-01	k: 5868	n:10000
Cons ci ratio: 2.890802e-02	ci left: 6.382456e-01	ci right 6.570684e-01	k: 6477	n:10000
KS ci ratio: 3.920980e-02	ci left: 4.899514e-01	ci right 5.096487e-01	k: 4998	n:10000
OR4C15   10000 perm   2 sec   (5541 perm/sec)   p_kst 4.998000e-01   p_cons 6.477000e-01   p_joint 5.868000e-01

Outputting figure to mutsig2_images.part000000000121/OR4C15.7_1115_10000_0.4998_0.6477_0.5868.png
                gene_name: OR4C15
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 35 percent done.
OR4K15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.083700e-02	ci left: 7.714461e-01	ci right 7.877907e-01	k: 7797	n:10000
KS ci ratio: 1.464933e-02	ci left: 8.709139e-01	ci right 8.838654e-01	k: 8775	n:10000
OR4K15   10000 perm   2 sec   (5624 perm/sec)   p_kst 8.775000e-01   p_cons 7.797000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000121/OR4K15.7_1049_10000_0.8775_0.7797_1.png
                gene_name: OR4K15
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 36 percent done.
OR2B11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.183069e-02	ci left: 2.777507e-01	ci right 2.955737e-01	k: 2866	n:10000
Cons ci ratio: 8.227486e-02	ci left: 1.773337e-01	ci right 1.926503e-01	k: 1849	n:10000
KS ci ratio: 8.843771e-02	ci left: 1.568896e-01	ci right 1.715066e-01	k: 1641	n:10000
OR2B11   10000 perm   2 sec   (5673 perm/sec)   p_kst 1.641000e-01   p_cons 1.849000e-01   p_joint 2.866000e-01

Outputting figure to mutsig2_images.part000000000121/OR2B11.6_957_10000_0.1641_0.1849_0.2866.png
                gene_name: OR2B11
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 37 percent done.
OR2B3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.714896e-02	ci left: 6.665257e-01	ci right 6.849718e-01	k: 6758	n:10000
KS ci ratio: 1.510876e-02	ci left: 8.639656e-01	ci right 8.772177e-01	k: 8707	n:10000
OR2B3   10000 perm   2 sec   (6042 perm/sec)   p_kst 8.707000e-01   p_cons 6.758000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000121/OR2B3.6_946_10000_0.8707_0.6758_1.png
                gene_name: OR2B3
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 39 percent done.
OR2F1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.333861e-02	ci left: 4.401153e-01	ci right 4.597139e-01	k: 4499	n:10000
Cons ci ratio: 8.088317e-02	ci left: 1.824506e-01	ci right 1.979303e-01	k: 1901	n:10000
KS ci ratio: 9.408979e-03	ci left: 9.409733e-01	ci right 9.499650e-01	k: 9456	n:10000
OR2F1   10000 perm   2 sec   (6395 perm/sec)   p_kst 9.456000e-01   p_cons 1.901000e-01   p_joint 4.499000e-01

Outputting figure to mutsig2_images.part000000000121/OR2F1.6_958_10000_0.9456_0.1901_0.4499.png
                gene_name: OR2F1
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 40 percent done.
OR2J3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.169719e-02	ci left: 9.127588e-01	ci right 9.235961e-01	k: 9183	n:10000
KS ci ratio: 1.143038e-02	ci left: 9.162609e-01	ci right 9.268919e-01	k: 9217	n:10000
OR2J3   10000 perm   2 sec   (5980 perm/sec)   p_kst 9.217000e-01   p_cons 9.183000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000121/OR2J3.6_939_10000_0.9217_0.9183_1.png
                gene_name: OR2J3
               theta_stop: 0.012 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 41 percent done.
OR2L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.622758e-02	ci left: 4.085072e-01	ci right 4.279405e-01	k: 4182	n:10000
Cons ci ratio: 4.677321e-02	ci left: 4.028281e-01	ci right 4.222229e-01	k: 4125	n:10000
KS ci ratio: 6.112769e-02	ci left: 2.824065e-01	ci right 3.003152e-01	k: 2913	n:10000
OR2L2   10000 perm   2 sec   (5921 perm/sec)   p_kst 2.913000e-01   p_cons 4.125000e-01   p_joint 4.182000e-01

Outputting figure to mutsig2_images.part000000000121/OR2L2.6_943_10000_0.2913_0.4125_0.4182.png
                gene_name: OR2L2
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 43 percent done.
OR2T10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.878148e-02	ci left: 6.402572e-01	ci right 6.590556e-01	k: 6497	n:10000
Cons ci ratio: 5.302402e-02	ci left: 3.439253e-01	ci right 3.627602e-01	k: 3533	n:10000
KS ci ratio: 1.719903e-02	ci left: 8.312409e-01	ci right 8.457613e-01	k: 8386	n:10000
OR2T10   10000 perm   2 sec   (5528 perm/sec)   p_kst 8.386000e-01   p_cons 3.533000e-01   p_joint 6.497000e-01

Outputting figure to mutsig2_images.part000000000121/OR2T10.6_942_10000_0.8386_0.3533_0.6497.png
                gene_name: OR2T10
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 44 percent done.
OR2T11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.694434e-02	ci left: 8.353127e-01	ci right 8.496872e-01	k: 8426	n:10000
Cons ci ratio: 7.627750e-03	ci left: 9.597417e-01	ci right 9.671851e-01	k: 9636	n:10000
KS ci ratio: 2.500901e-02	ci left: 7.017023e-01	ci right 7.195748e-01	k: 7107	n:10000
OR2T11   10000 perm   2 sec   (5985 perm/sec)   p_kst 7.107000e-01   p_cons 9.636000e-01   p_joint 8.426000e-01

Outputting figure to mutsig2_images.part000000000121/OR2T11.6_955_10000_0.7107_0.9636_0.8426.png
                gene_name: OR2T11
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 45 percent done.
OR2T3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.801579e-01	ci left: 4.111563e-02	ci right 4.935192e-02	k: 451	n:10000
Cons ci ratio: 9.768106e-02	ci left: 1.318837e-01	ci right 1.455275e-01	k: 1386	n:10000
KS ci ratio: 2.571973e-01	ci left: 1.977670e-02	ci right 2.570584e-02	k: 226	n:10000
OR2T3   10000 perm   2 sec   (5736 perm/sec)   p_kst 2.260000e-02   p_cons 1.386000e-01   p_joint 4.510000e-02

Joint ci ratio: 1.839540e-01	ci left: 2.015504e-02	ci right 2.428549e-02	k: 443	n:20000
Cons ci ratio: 7.078503e-02	ci left: 1.282239e-01	ci right 1.376831e-01	k: 2658	n:20000
KS ci ratio: 1.810558e-01	ci left: 2.082370e-02	ci right 2.501659e-02	k: 457	n:20000
OR2T3   20000 perm   4 sec   (5183 perm/sec)   p_kst 2.285000e-02   p_cons 1.329000e-01   p_joint 2.215000e-02

Joint ci ratio: 1.331807e-01	ci left: 2.619459e-02	ci right 2.996421e-02	k: 841	n:30000
Cons ci ratio: 5.825597e-02	ci left: 1.273000e-01	ci right 1.349716e-01	k: 3933	n:30000
KS ci ratio: 1.479429e-01	ci left: 2.117272e-02	ci right 2.458721e-02	k: 685	n:30000
OR2T3   30000 perm   6 sec   (4948 perm/sec)   p_kst 2.283333e-02   p_cons 1.311000e-01   p_joint 2.803333e-02

Joint ci ratio: 1.167184e-01	ci left: 2.582210e-02	ci right 2.904700e-02	k: 1096	n:40000
Cons ci ratio: 5.024387e-02	ci left: 1.287466e-01	ci right 1.354069e-01	k: 5282	n:40000
KS ci ratio: 1.261376e-01	ci left: 2.208610e-02	ci right 2.508362e-02	k: 942	n:40000
OR2T3   40000 perm   8 sec   (4788 perm/sec)   p_kst 2.355000e-02   p_cons 1.320500e-01   p_joint 2.740000e-02

Joint ci ratio: 1.006207e-01	ci left: 2.797573e-02	ci right 3.095924e-02	k: 1472	n:50000
Cons ci ratio: 4.488769e-02	ci left: 1.293614e-01	ci right 1.353213e-01	k: 6616	n:50000
KS ci ratio: 1.134511e-01	ci left: 2.199546e-02	ci right 2.466028e-02	k: 1165	n:50000
OR2T3   50000 perm   11 sec   (4668 perm/sec)   p_kst 2.330000e-02   p_cons 1.323200e-01   p_joint 2.944000e-02

Joint ci ratio: 8.562783e-02	ci left: 3.230298e-02	ci right 3.520901e-02	k: 2024	n:60000
Cons ci ratio: 4.108232e-02	ci left: 1.290367e-01	ci right 1.344656e-01	k: 7904	n:60000
KS ci ratio: 1.029354e-01	ci left: 2.238388e-02	ci right 2.482917e-02	k: 1415	n:60000
OR2T3   60000 perm   13 sec   (4562 perm/sec)   p_kst 2.358333e-02   p_cons 1.317333e-01   p_joint 3.373333e-02

Joint ci ratio: 7.989943e-02	ci left: 3.191305e-02	ci right 3.458296e-02	k: 2326	n:70000
Cons ci ratio: 3.816725e-02	ci left: 1.284521e-01	ci right 1.334643e-01	k: 9166	n:70000
KS ci ratio: 9.550724e-02	ci left: 2.237649e-02	ci right 2.463467e-02	k: 1644	n:70000
OR2T3   70000 perm   16 sec   (4466 perm/sec)   p_kst 2.348571e-02   p_cons 1.309429e-01   p_joint 3.322857e-02

Outputting figure to mutsig2_images.part000000000121/OR2T3.6_961_70000_0.023486_0.13094_0.033229.png
                gene_name: OR2T3
               theta_stop: 0.096 
                    nperm: 70000 
                     p_ks: 0.023 
        ci_ks_bounds_left: 0.022 
       ci_ks_bounds_right: 0.025 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.033 
     ci_joint_bounds_left: 0.032 
    ci_joint_bounds_right: 0.035 

Current progress: 47 percent done.
OR2T6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.344429e-02	ci left: 3.403483e-01	ci right 3.591393e-01	k: 3497	n:10000
Cons ci ratio: 3.141976e-02	ci left: 5.991544e-01	ci right 6.183822e-01	k: 6088	n:10000
KS ci ratio: 6.941318e-02	ci left: 2.333353e-01	ci right 2.502154e-01	k: 2417	n:10000
OR2T6   10000 perm   2 sec   (5968 perm/sec)   p_kst 2.417000e-01   p_cons 6.088000e-01   p_joint 3.497000e-01

Outputting figure to mutsig2_images.part000000000121/OR2T6.6_931_10000_0.2417_0.6088_0.3497.png
                gene_name: OR2T6
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 48 percent done.
OR4C16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.047174e-01	ci left: 1.164278e-01	ci right 1.293928e-01	k: 1228	n:10000
Cons ci ratio: 1.647107e-01	ci left: 4.917009e-02	ci right 5.809220e-02	k: 535	n:10000
KS ci ratio: 1.083156e-01	ci left: 1.094933e-01	ci right 1.221314e-01	k: 1157	n:10000
OR4C16   10000 perm   2 sec   (6053 perm/sec)   p_kst 1.157000e-01   p_cons 5.350000e-02   p_joint 1.228000e-01

Joint ci ratio: 1.060895e-01	ci left: 6.050025e-02	ci right 6.732720e-02	k: 1277	n:20000
Cons ci ratio: 1.207563e-01	ci left: 4.702009e-02	ci right 5.311157e-02	k: 1000	n:20000
KS ci ratio: 7.437585e-02	ci left: 1.173959e-01	ci right 1.265143e-01	k: 2438	n:20000
OR4C16   20000 perm   4 sec   (5429 perm/sec)   p_kst 1.219000e-01   p_cons 5.000000e-02   p_joint 6.385000e-02

Joint ci ratio: 8.718238e-02	ci left: 6.037437e-02	ci right 6.591060e-02	k: 1893	n:30000
Cons ci ratio: 9.722523e-02	ci left: 4.889563e-02	ci right 5.392503e-02	k: 1541	n:30000
KS ci ratio: 5.981449e-02	ci left: 1.214748e-01	ci right 1.289979e-01	k: 3756	n:30000
OR4C16   30000 perm   6 sec   (5167 perm/sec)   p_kst 1.252000e-01   p_cons 5.136667e-02   p_joint 6.310000e-02

Outputting figure to mutsig2_images.part000000000121/OR4C16.6_935_30000_0.1252_0.051367_0.0631.png
                gene_name: OR4C16
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.051 
      ci_cons_bounds_left: 0.049 
     ci_cons_bounds_right: 0.054 
                  p_joint: 0.063 
     ci_joint_bounds_left: 0.060 
    ci_joint_bounds_right: 0.066 

Current progress: 49 percent done.
OR4C3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.769032e-01	ci left: 4.264711e-02	ci right 5.101943e-02	k: 467	n:10000
Cons ci ratio: 2.461427e-02	ci left: 7.082607e-01	ci right 7.260126e-01	k: 7172	n:10000
KS ci ratio: 3.155130e-01	ci left: 1.280183e-02	ci right 1.768651e-02	k: 151	n:10000
OR4C3   10000 perm   2 sec   (5982 perm/sec)   p_kst 1.510000e-02   p_cons 7.172000e-01   p_joint 4.670000e-02

Joint ci ratio: 1.350006e-01	ci left: 3.771321e-02	ci right 4.322141e-02	k: 808	n:20000
Cons ci ratio: 1.801607e-02	ci left: 6.966131e-01	ci right 7.093278e-01	k: 14060	n:20000
KS ci ratio: 2.123661e-01	ci left: 1.496956e-02	ci right 1.857290e-02	k: 334	n:20000
OR4C3   20000 perm   4 sec   (5366 perm/sec)   p_kst 1.670000e-02   p_cons 7.030000e-01   p_joint 4.040000e-02

Joint ci ratio: 9.342215e-02	ci left: 5.283788e-02	ci right 5.804864e-02	k: 1662	n:30000
Cons ci ratio: 1.502081e-02	ci left: 6.889510e-01	ci right 6.994114e-01	k: 20826	n:30000
KS ci ratio: 1.714134e-01	ci left: 1.566320e-02	ci right 1.863136e-02	k: 513	n:30000
OR4C3   30000 perm   6 sec   (5113 perm/sec)   p_kst 1.710000e-02   p_cons 6.942000e-01   p_joint 5.540000e-02

Joint ci ratio: 9.824692e-02	ci left: 3.639149e-02	ci right 4.017592e-02	k: 1530	n:40000
Cons ci ratio: 1.304908e-02	ci left: 6.883279e-01	ci right 6.973940e-01	k: 27715	n:40000
KS ci ratio: 1.477196e-01	ci left: 1.602077e-02	ci right 1.859998e-02	k: 691	n:40000
OR4C3   40000 perm   8 sec   (4950 perm/sec)   p_kst 1.727500e-02   p_cons 6.928750e-01   p_joint 3.825000e-02

Joint ci ratio: 6.944978e-02	ci left: 5.781592e-02	ci right 6.199536e-02	k: 2994	n:50000
Cons ci ratio: 1.111629e-02	ci left: 7.092336e-01	ci right 7.171817e-01	k: 35661	n:50000
KS ci ratio: 1.316609e-01	ci left: 1.627197e-02	ci right 1.858454e-02	k: 870	n:50000
OR4C3   50000 perm   10 sec   (4810 perm/sec)   p_kst 1.740000e-02   p_cons 7.132200e-01   p_joint 5.988000e-02

Joint ci ratio: 6.282435e-02	ci left: 5.901582e-02	ci right 6.286012e-02	k: 3655	n:60000
Cons ci ratio: 1.044247e-02	ci left: 6.976867e-01	ci right 7.050272e-01	k: 42082	n:60000
KS ci ratio: 1.193899e-01	ci left: 1.659526e-02	ci right 1.871843e-02	k: 1058	n:60000
OR4C3   60000 perm   13 sec   (4699 perm/sec)   p_kst 1.763333e-02   p_cons 7.013667e-01   p_joint 6.091667e-02

Joint ci ratio: 6.829967e-02	ci left: 4.340578e-02	ci right 4.648923e-02	k: 3145	n:70000
Cons ci ratio: 9.657529e-03	ci left: 6.984100e-01	ci right 7.052019e-01	k: 49127	n:70000
KS ci ratio: 1.097898e-01	ci left: 1.690287e-02	ci right 1.888024e-02	k: 1251	n:70000
OR4C3   70000 perm   15 sec   (4589 perm/sec)   p_kst 1.787143e-02   p_cons 7.018143e-01   p_joint 4.492857e-02

Joint ci ratio: 7.040924e-02	ci left: 3.598515e-02	ci right 3.862354e-02	k: 2983	n:80000
Cons ci ratio: 9.011182e-03	ci left: 6.996822e-01	ci right 7.060281e-01	k: 56229	n:80000
KS ci ratio: 1.029137e-01	ci left: 1.689502e-02	ci right 1.874019e-02	k: 1424	n:80000
OR4C3   80000 perm   18 sec   (4495 perm/sec)   p_kst 1.780000e-02   p_cons 7.028625e-01   p_joint 3.728750e-02

Joint ci ratio: 6.351838e-02	ci left: 3.930892e-02	ci right 4.189857e-02	k: 3653	n:90000
Cons ci ratio: 8.483995e-03	ci left: 7.004484e-01	ci right 7.064274e-01	k: 63310	n:90000
KS ci ratio: 9.672517e-02	ci left: 1.705463e-02	ci right 1.879886e-02	k: 1612	n:90000
OR4C3   90000 perm   20 sec   (4407 perm/sec)   p_kst 1.791111e-02   p_cons 7.034444e-01   p_joint 4.058889e-02

Outputting figure to mutsig2_images.part000000000121/OR4C3.6_992_90000_0.017911_0.70344_0.040589.png
                gene_name: OR4C3
               theta_stop: 0.097 
                    nperm: 90000 
                     p_ks: 0.018 
        ci_ks_bounds_left: 0.017 
       ci_ks_bounds_right: 0.019 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.041 
     ci_joint_bounds_left: 0.039 
    ci_joint_bounds_right: 0.042 

Current progress: 51 percent done.
OR4C46
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.598207e-02	ci left: 3.196927e-01	ci right 3.382070e-01	k: 3289	n:10000
Cons ci ratio: 1.487993e-02	ci left: 8.674390e-01	ci right 8.805423e-01	k: 8741	n:10000
KS ci ratio: 7.450460e-02	ci left: 2.086584e-01	ci right 2.249069e-01	k: 2167	n:10000
OR4C46   10000 perm   2 sec   (6070 perm/sec)   p_kst 2.167000e-01   p_cons 8.741000e-01   p_joint 3.289000e-01

Outputting figure to mutsig2_images.part000000000121/OR4C46.6_932_10000_0.2167_0.8741_0.3289.png
                gene_name: OR4C46
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 52 percent done.
OR4D11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.732877e-02	ci left: 6.636054e-01	ci right 6.820938e-01	k: 6729	n:10000
Cons ci ratio: 1.684207e-02	ci left: 8.369418e-01	ci right 8.512571e-01	k: 8442	n:10000
KS ci ratio: 4.920140e-02	ci left: 3.786320e-01	ci right 3.978331e-01	k: 3882	n:10000
OR4D11   10000 perm   2 sec   (5650 perm/sec)   p_kst 3.882000e-01   p_cons 8.442000e-01   p_joint 6.729000e-01

Outputting figure to mutsig2_images.part000000000121/OR4D11.6_940_10000_0.3882_0.8442_0.6729.png
                gene_name: OR4D11
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 53 percent done.
OR4D2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.992472e-02	ci left: 7.866480e-01	ci right 8.025800e-01	k: 7947	n:10000
Cons ci ratio: 4.680217e-02	ci left: 4.025292e-01	ci right 4.219220e-01	k: 4122	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
OR4D2   10000 perm   2 sec   (5277 perm/sec)   p_kst 1   p_cons 4.122000e-01   p_joint 7.947000e-01

Outputting figure to mutsig2_images.part000000000121/OR4D2.6_927_10000_1_0.4122_0.7947.png
                gene_name: OR4D2
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 55 percent done.
OR4F6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.881975e-02	ci left: 8.049125e-01	ci right 8.203049e-01	k: 8127	n:10000
Cons ci ratio: 2.118833e-02	ci left: 7.655723e-01	ci right 7.820679e-01	k: 7739	n:10000
KS ci ratio: 2.365186e-02	ci left: 7.243132e-01	ci right 7.417508e-01	k: 7331	n:10000
OR4F6   10000 perm   2 sec   (5670 perm/sec)   p_kst 7.331000e-01   p_cons 7.739000e-01   p_joint 8.127000e-01

Outputting figure to mutsig2_images.part000000000121/OR4F6.6_941_10000_0.7331_0.7739_0.8127.png
                gene_name: OR4F6
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 56 percent done.
OR4K14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.901168e-03	ci left: 9.352693e-01	ci right 9.446723e-01	k: 9401	n:10000
KS ci ratio: 3.074454e-02	ci left: 6.094987e-01	ci right 6.286319e-01	k: 6191	n:10000
OR4K14   10000 perm   2 sec   (5903 perm/sec)   p_kst 6.191000e-01   p_cons 9.401000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000121/OR4K14.6_936_10000_0.6191_0.9401_1.png
                gene_name: OR4K14
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 57 percent done.
OR2F2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.090273e-02	ci left: 2.257305e-01	ci right 2.424247e-01	k: 2340	n:10000
Cons ci ratio: 2.349480e-02	ci left: 7.269395e-01	ci right 7.443230e-01	k: 7357	n:10000
KS ci ratio: 1.044270e-01	ci left: 1.170141e-01	ci right 1.300061e-01	k: 1234	n:10000
OR2F2   10000 perm   2 sec   (6048 perm/sec)   p_kst 1.234000e-01   p_cons 7.357000e-01   p_joint 2.340000e-01

Joint ci ratio: 3.823943e-02	ci left: 3.378126e-01	ci right 3.510327e-01	k: 6888	n:20000
Cons ci ratio: 1.667338e-02	ci left: 7.281196e-01	ci right 7.404122e-01	k: 14686	n:20000
KS ci ratio: 7.283658e-02	ci left: 1.218734e-01	ci right 1.311355e-01	k: 2529	n:20000
OR2F2   20000 perm   4 sec   (5402 perm/sec)   p_kst 1.264500e-01   p_cons 7.343000e-01   p_joint 3.444000e-01

Outputting figure to mutsig2_images.part000000000121/OR2F2.5_957_20000_0.12645_0.7343_0.3444.png
                gene_name: OR2F2
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 59 percent done.
OR2G2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.007201e-02	ci left: 3.703732e-01	ci right 3.894968e-01	k: 3799	n:10000
Cons ci ratio: 7.861921e-02	ci left: 1.912134e-01	ci right 2.069623e-01	k: 1990	n:10000
KS ci ratio: 4.720036e-02	ci left: 3.984451e-01	ci right 4.178085e-01	k: 4081	n:10000
OR2G2   10000 perm   2 sec   (6006 perm/sec)   p_kst 4.081000e-01   p_cons 1.990000e-01   p_joint 3.799000e-01

Outputting figure to mutsig2_images.part000000000121/OR2G2.5_957_10000_0.4081_0.199_0.3799.png
                gene_name: OR2G2
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 60 percent done.
OR4A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.680355e-02	ci left: 3.133413e-01	ci right 3.317622e-01	k: 3225	n:10000
Cons ci ratio: 7.277146e-02	ci left: 2.166492e-01	ci right 2.331114e-01	k: 2248	n:10000
KS ci ratio: 5.975051e-02	ci left: 2.918206e-01	ci right 3.098956e-01	k: 3008	n:10000
OR4A5   10000 perm   2 sec   (6039 perm/sec)   p_kst 3.008000e-01   p_cons 2.248000e-01   p_joint 3.225000e-01

Outputting figure to mutsig2_images.part000000000121/OR4A5.5_952_10000_0.3008_0.2248_0.3225.png
                gene_name: OR4A5
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 61 percent done.
OR4D10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.208421e-03	ci left: 9.864298e-01	ci right 9.906784e-01	k: 9887	n:10000
KS ci ratio: 1.095686e-02	ci left: 9.223452e-01	ci right 9.326041e-01	k: 9276	n:10000
OR4D10   10000 perm   2 sec   (5938 perm/sec)   p_kst 9.276000e-01   p_cons 9.887000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000121/OR4D10.5_940_10000_0.9276_0.9887_1.png
                gene_name: OR4D10
               theta_stop: 0.011 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 63 percent done.
OR4D9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.078365e-02	ci left: 6.088960e-01	ci right 6.280350e-01	k: 6185	n:10000
Cons ci ratio: 2.517934e-02	ci left: 6.988779e-01	ci right 7.168009e-01	k: 7079	n:10000
KS ci ratio: 4.866711e-02	ci left: 3.838077e-01	ci right 4.030544e-01	k: 3934	n:10000
OR4D9   10000 perm   2 sec   (6115 perm/sec)   p_kst 3.934000e-01   p_cons 7.079000e-01   p_joint 6.185000e-01

Outputting figure to mutsig2_images.part000000000121/OR4D9.5_947_10000_0.3934_0.7079_0.6185.png
                gene_name: OR4D9
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 64 percent done.
OR2AG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.376352e-02	ci left: 8.840108e-01	ci right 8.963609e-01	k: 8903	n:10000
Cons ci ratio: 1.369301e-02	ci left: 8.850350e-01	ci right 8.973360e-01	k: 8913	n:10000
KS ci ratio: 2.742191e-02	ci left: 6.620951e-01	ci right 6.806050e-01	k: 6714	n:10000
OR2AG2   10000 perm   2 sec   (6348 perm/sec)   p_kst 6.714000e-01   p_cons 8.913000e-01   p_joint 8.903000e-01

Outputting figure to mutsig2_images.part000000000121/OR2AG2.4_955_10000_0.6714_0.8913_0.8903.png
                gene_name: OR2AG2
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.90 

Current progress: 65 percent done.
OR2B2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.836544e-02	ci left: 6.468968e-01	ci right 6.656121e-01	k: 6563	n:10000
Cons ci ratio: 6.687871e-02	ci left: 2.470728e-01	ci right 2.642697e-01	k: 2556	n:10000
KS ci ratio: 2.709323e-02	ci left: 6.674321e-01	ci right 6.858649e-01	k: 6767	n:10000
OR2B2   10000 perm   2 sec   (6051 perm/sec)   p_kst 6.767000e-01   p_cons 2.556000e-01   p_joint 6.563000e-01

Outputting figure to mutsig2_images.part000000000121/OR2B2.4_1078_10000_0.6767_0.2556_0.6563.png
                gene_name: OR2B2
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 67 percent done.
OR2C3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.822401e-02	ci left: 3.027268e-01	ci right 3.209830e-01	k: 3118	n:10000
Cons ci ratio: 3.251899e-02	ci left: 5.825929e-01	ci right 6.019533e-01	k: 5923	n:10000
KS ci ratio: 8.117314e-02	ci left: 1.813680e-01	ci right 1.968136e-01	k: 1890	n:10000
OR2C3   10000 perm   2 sec   (6476 perm/sec)   p_kst 1.890000e-01   p_cons 5.923000e-01   p_joint 3.118000e-01

Outputting figure to mutsig2_images.part000000000121/OR2C3.4_967_10000_0.189_0.5923_0.3118.png
                gene_name: OR2C3
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 68 percent done.
OR2D2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.866711e-02	ci left: 3.838077e-01	ci right 4.030544e-01	k: 3934	n:10000
Cons ci ratio: 7.164216e-02	ci left: 2.220775e-01	ci right 2.386798e-01	k: 2303	n:10000
KS ci ratio: 5.401300e-02	ci left: 3.355799e-01	ci right 3.543105e-01	k: 3449	n:10000
OR2D2   10000 perm   2 sec   (6461 perm/sec)   p_kst 3.449000e-01   p_cons 2.303000e-01   p_joint 3.934000e-01

Outputting figure to mutsig2_images.part000000000121/OR2D2.4_930_10000_0.3449_0.2303_0.3934.png
                gene_name: OR2D2
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 69 percent done.
OR2J2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.410874e-02	ci left: 3.347852e-01	ci right 3.535056e-01	k: 3441	n:10000
Cons ci ratio: 2.610159e-02	ci left: 6.836528e-01	ci right 7.018348e-01	k: 6928	n:10000
KS ci ratio: 7.546088e-02	ci left: 2.044183e-01	ci right 2.205496e-01	k: 2124	n:10000
OR2J2   10000 perm   2 sec   (6052 perm/sec)   p_kst 2.124000e-01   p_cons 6.928000e-01   p_joint 3.441000e-01

Outputting figure to mutsig2_images.part000000000121/OR2J2.4_942_10000_0.2124_0.6928_0.3441.png
                gene_name: OR2J2
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 71 percent done.
OR2L3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.666916e-01	ci left: 4.801742e-02	ci right 5.684561e-02	k: 523	n:10000
Cons ci ratio: 3.899868e-02	ci left: 4.926508e-01	ci right 5.123478e-01	k: 5025	n:10000
KS ci ratio: 4.136457e-01	ci left: 7.063669e-03	ci right 1.083076e-02	k: 88	n:10000
OR2L3   10000 perm   2 sec   (6504 perm/sec)   p_kst 8.800000e-03   p_cons 5.025000e-01   p_joint 5.230000e-02

Joint ci ratio: 1.270996e-01	ci left: 4.250762e-02	ci right 4.832547e-02	k: 907	n:20000
Cons ci ratio: 2.760035e-02	ci left: 4.951457e-01	ci right 5.090537e-01	k: 10042	n:20000
KS ci ratio: 2.958716e-01	ci left: 7.413449e-03	ci right 1.003239e-02	k: 173	n:20000
OR2L3   20000 perm   3 sec   (5771 perm/sec)   p_kst 8.650000e-03   p_cons 5.021000e-01   p_joint 4.535000e-02

Joint ci ratio: 1.040978e-01	ci left: 4.277918e-02	ci right 4.750942e-02	k: 1353	n:30000
Cons ci ratio: 2.162592e-02	ci left: 5.170293e-01	ci right 5.283663e-01	k: 15681	n:30000
KS ci ratio: 2.478852e-01	ci left: 7.241974e-03	ci right 9.321610e-03	k: 247	n:30000
OR2L3   30000 perm   5 sec   (5488 perm/sec)   p_kst 8.233333e-03   p_cons 5.227000e-01   p_joint 4.510000e-02

Joint ci ratio: 7.520618e-02	ci left: 6.120314e-02	ci right 6.601045e-02	k: 2543	n:40000
Cons ci ratio: 1.954349e-02	ci left: 4.965127e-01	ci right 5.063371e-01	k: 20057	n:40000
KS ci ratio: 2.155539e-01	ci left: 7.315922e-03	ci right 9.106577e-03	k: 327	n:40000
OR2L3   40000 perm   8 sec   (5299 perm/sec)   p_kst 8.175000e-03   p_cons 5.014250e-01   p_joint 6.357500e-02

Joint ci ratio: 7.294721e-02	ci left: 5.260481e-02	ci right 5.660710e-02	k: 2729	n:50000
Cons ci ratio: 1.739822e-02	ci left: 4.993874e-01	ci right 5.081722e-01	k: 25189	n:50000
KS ci ratio: 1.964540e-01	ci left: 7.123666e-03	ci right 8.694274e-03	k: 394	n:50000
OR2L3   50000 perm   10 sec   (5148 perm/sec)   p_kst 7.880000e-03   p_cons 5.037800e-01   p_joint 5.458000e-02

Joint ci ratio: 7.843345e-02	ci left: 3.839692e-02	ci right 4.154777e-02	k: 2397	n:60000
Cons ci ratio: 1.591463e-02	ci left: 4.987576e-01	ci right 5.067755e-01	k: 30166	n:60000
KS ci ratio: 1.783915e-01	ci left: 7.270879e-03	ci right 8.710656e-03	k: 478	n:60000
OR2L3   60000 perm   12 sec   (5022 perm/sec)   p_kst 7.966667e-03   p_cons 5.027667e-01   p_joint 3.995000e-02

Joint ci ratio: 9.122501e-02	ci left: 2.452635e-02	ci right 2.688461e-02	k: 1798	n:70000
Cons ci ratio: 1.471002e-02	ci left: 4.998746e-01	ci right 5.072965e-01	k: 35251	n:70000
KS ci ratio: 1.667962e-01	ci left: 7.175320e-03	ci right 8.494539e-03	k: 547	n:70000
OR2L3   70000 perm   14 sec   (4901 perm/sec)   p_kst 7.814286e-03   p_cons 5.035857e-01   p_joint 2.568571e-02

Joint ci ratio: 1.081724e-01	ci left: 1.527568e-02	ci right 1.703466e-02	k: 1291	n:80000
Cons ci ratio: 1.324384e-02	ci left: 5.192193e-01	ci right 5.261541e-01	k: 41815	n:80000
KS ci ratio: 1.553111e-01	ci left: 7.286159e-03	ci right 8.524927e-03	k: 631	n:80000
OR2L3   80000 perm   17 sec   (4791 perm/sec)   p_kst 7.887500e-03   p_cons 5.226875e-01   p_joint 1.613750e-02

Joint ci ratio: 9.113095e-02	ci left: 1.922564e-02	ci right 2.107214e-02	k: 1812	n:90000
Cons ci ratio: 1.248306e-02	ci left: 5.195528e-01	ci right 5.260902e-01	k: 47054	n:90000
KS ci ratio: 1.467412e-01	ci left: 7.289136e-03	ci right 8.454030e-03	k: 707	n:90000
OR2L3   90000 perm   19 sec   (4687 perm/sec)   p_kst 7.855556e-03   p_cons 5.228222e-01   p_joint 2.013333e-02

Joint ci ratio: 7.947540e-02	ci left: 2.280527e-02	ci right 2.470249e-02	k: 2374	n:100000
Cons ci ratio: 1.185228e-02	ci left: 5.193085e-01	ci right 5.255102e-01	k: 52241	n:100000
KS ci ratio: 1.381238e-01	ci left: 7.437854e-03	ci right 8.550968e-03	k: 798	n:100000
OR2L3   100000 perm   22 sec   (4591 perm/sec)   p_kst 7.980000e-03   p_cons 5.224100e-01   p_joint 2.374000e-02

Joint ci ratio: 6.591047e-02	ci left: 3.012674e-02	ci right 3.218899e-02	k: 3426	n:110000
Cons ci ratio: 1.130795e-02	ci left: 5.191339e-01	ci right 5.250467e-01	k: 57430	n:110000
KS ci ratio: 1.321438e-01	ci left: 7.411668e-03	ci right 8.469068e-03	k: 872	n:110000
OR2L3   110000 perm   24 sec   (4509 perm/sec)   p_kst 7.927273e-03   p_cons 5.220909e-01   p_joint 3.114545e-02

Joint ci ratio: 6.674423e-02	ci left: 2.700826e-02	ci right 2.888131e-02	k: 3352	n:120000
Cons ci ratio: 1.083756e-02	ci left: 5.187523e-01	ci right 5.244133e-01	k: 62590	n:120000
KS ci ratio: 1.259437e-01	ci left: 7.503719e-03	ci right 8.520273e-03	k: 960	n:120000
OR2L3   120000 perm   27 sec   (4433 perm/sec)   p_kst 8.000000e-03   p_cons 5.215833e-01   p_joint 2.793333e-02

Joint ci ratio: 5.447952e-02	ci left: 3.725560e-02	ci right 3.934967e-02	k: 4978	n:130000
Cons ci ratio: 1.040788e-02	ci left: 5.190803e-01	ci right 5.245187e-01	k: 67834	n:130000
KS ci ratio: 1.208907e-01	ci left: 7.537817e-03	ci right 8.515088e-03	k: 1042	n:130000
OR2L3   130000 perm   30 sec   (4356 perm/sec)   p_kst 8.015385e-03   p_cons 5.218000e-01   p_joint 3.829231e-02

Joint ci ratio: 5.351795e-02	ci left: 3.591854e-02	ci right 3.790070e-02	k: 5166	n:140000
Cons ci ratio: 1.003375e-02	ci left: 5.189579e-01	ci right 5.241983e-01	k: 73021	n:140000
KS ci ratio: 1.165577e-01	ci left: 7.546934e-03	ci right 8.487900e-03	k: 1121	n:140000
OR2L3   140000 perm   33 sec   (4277 perm/sec)   p_kst 8.007143e-03   p_cons 5.215786e-01   p_joint 3.690000e-02

Joint ci ratio: 5.275651e-02	ci left: 3.456266e-02	ci right 3.644202e-02	k: 5324	n:150000
Cons ci ratio: 9.695052e-03	ci left: 5.189683e-01	ci right 5.240309e-01	k: 78225	n:150000
KS ci ratio: 1.127541e-01	ci left: 7.542417e-03	ci right 8.450089e-03	k: 1198	n:150000
OR2L3   150000 perm   36 sec   (4201 perm/sec)   p_kst 7.986667e-03   p_cons 5.215000e-01   p_joint 3.549333e-02

Joint ci ratio: 5.320599e-02	ci left: 3.193878e-02	ci right 3.369070e-02	k: 5249	n:160000
Cons ci ratio: 9.387787e-03	ci left: 5.190176e-01	ci right 5.239192e-01	k: 83435	n:160000
KS ci ratio: 1.092570e-01	ci left: 7.544981e-03	ci right 8.422988e-03	k: 1276	n:160000
OR2L3   160000 perm   39 sec   (4132 perm/sec)   p_kst 7.975000e-03   p_cons 5.214688e-01   p_joint 3.280625e-02

Joint ci ratio: 5.469463e-02	ci left: 2.852663e-02	ci right 3.013653e-02	k: 4985	n:170000
Cons ci ratio: 9.102419e-03	ci left: 5.193692e-01	ci right 5.241242e-01	k: 88697	n:170000
KS ci ratio: 1.064232e-01	ci left: 7.496084e-03	ci right 8.344356e-03	k: 1345	n:170000
OR2L3   170000 perm   42 sec   (4066 perm/sec)   p_kst 7.911765e-03   p_cons 5.217471e-01   p_joint 2.932353e-02

Joint ci ratio: 5.318111e-02	ci left: 2.852024e-02	ci right 3.008386e-02	k: 5273	n:180000
Cons ci ratio: 8.840400e-03	ci left: 5.197504e-01	ci right 5.243711e-01	k: 93971	n:180000
KS ci ratio: 1.035778e-01	ci left: 7.485357e-03	ci right 8.308389e-03	k: 1420	n:180000
OR2L3   180000 perm   45 sec   (3999 perm/sec)   p_kst 7.888889e-03   p_cons 5.220611e-01   p_joint 2.929444e-02

Joint ci ratio: 5.307860e-02	ci left: 2.716407e-02	ci right 2.865038e-02	k: 5301	n:190000
Cons ci ratio: 8.604491e-03	ci left: 5.198194e-01	ci right 5.243167e-01	k: 99193	n:190000
KS ci ratio: 1.013941e-01	ci left: 7.409327e-03	ci right 8.205800e-03	k: 1482	n:190000
OR2L3   190000 perm   48 sec   (3936 perm/sec)   p_kst 7.800000e-03   p_cons 5.220684e-01   p_joint 2.790000e-02

Joint ci ratio: 5.446105e-02	ci left: 2.456189e-02	ci right 2.594191e-02	k: 5049	n:200000
Cons ci ratio: 8.725791e-03	ci left: 5.000662e-01	ci right 5.044537e-01	k: 100452	n:200000
KS ci ratio: 9.810265e-02	ci left: 7.531287e-03	ci right 8.313077e-03	k: 1583	n:200000
OR2L3   200000 perm   52 sec   (3875 perm/sec)   p_kst 7.915000e-03   p_cons 5.022600e-01   p_joint 2.524500e-02

Outputting figure to mutsig2_images.part000000000121/OR2L3.4_943_200000_0.007915_0.50226_0.025245.png
                gene_name: OR2L3
               theta_stop: 0.098 
                    nperm: 200000 
                     p_ks: 0.0079 
        ci_ks_bounds_left: 0.0075 
       ci_ks_bounds_right: 0.0083 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.025 
     ci_joint_bounds_left: 0.025 
    ci_joint_bounds_right: 0.026 

Current progress: 72 percent done.
OR2M4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.472956e-02	ci left: 7.063434e-01	ci right 7.241310e-01	k: 7153	n:10000
Cons ci ratio: 2.473563e-02	ci left: 7.062425e-01	ci right 7.240320e-01	k: 7152	n:10000
KS ci ratio: 3.459494e-02	ci left: 5.523091e-01	ci right 5.718547e-01	k: 5621	n:10000
OR2M4   10000 perm   2 sec   (5914 perm/sec)   p_kst 5.621000e-01   p_cons 7.152000e-01   p_joint 7.153000e-01

Outputting figure to mutsig2_images.part000000000121/OR2M4.4_939_10000_0.5621_0.7152_0.7153.png
                gene_name: OR2M4
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.72 

Current progress: 73 percent done.
OR4B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.430680e-02	ci left: 8.760270e-01	ci right 8.887493e-01	k: 8825	n:10000
Cons ci ratio: 3.073802e-02	ci left: 6.095991e-01	ci right 6.287314e-01	k: 6192	n:10000
KS ci ratio: 8.536721e-03	ci left: 9.505438e-01	ci right 9.587887e-01	k: 9548	n:10000
OR4B1   10000 perm   2 sec   (6254 perm/sec)   p_kst 9.548000e-01   p_cons 6.192000e-01   p_joint 8.825000e-01

Outputting figure to mutsig2_images.part000000000121/OR4B1.4_933_10000_0.9548_0.6192_0.8825.png
                gene_name: OR4B1
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 75 percent done.
OR4F15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.596451e-02	ci left: 5.330750e-01	ci right 5.527000e-01	k: 5429	n:10000
Cons ci ratio: 5.130555e-02	ci left: 3.590346e-01	ci right 3.780420e-01	k: 3685	n:10000
KS ci ratio: 2.668554e-02	ci left: 6.740801e-01	ci right 6.924131e-01	k: 6833	n:10000
OR4F15   10000 perm   2 sec   (6025 perm/sec)   p_kst 6.833000e-01   p_cons 3.685000e-01   p_joint 5.429000e-01

Outputting figure to mutsig2_images.part000000000121/OR4F15.4_941_10000_0.6833_0.3685_0.5429.png
                gene_name: OR4F15
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 76 percent done.
OR2D3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.481229e-02	ci left: 8.684609e-01	ci right 8.815198e-01	k: 8751	n:10000
KS ci ratio: 1.939234e-02	ci left: 7.954727e-01	ci right 8.111502e-01	k: 8034	n:10000
OR2D3   10000 perm   2 sec   (6508 perm/sec)   p_kst 8.034000e-01   p_cons 8.751000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000121/OR2D3.3_996_10000_0.8034_0.8751_1.png
                gene_name: OR2D3
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
OR2M5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.324725e-02	ci left: 7.310817e-01	ci right 7.483784e-01	k: 7398	n:10000
Cons ci ratio: 4.682149e-02	ci left: 4.023300e-01	ci right 4.217213e-01	k: 4120	n:10000
KS ci ratio: 2.697569e-02	ci left: 6.693457e-01	ci right 6.877502e-01	k: 6786	n:10000
OR2M5   10000 perm   2 sec   (6352 perm/sec)   p_kst 6.786000e-01   p_cons 4.120000e-01   p_joint 7.398000e-01

Outputting figure to mutsig2_images.part000000000121/OR2M5.3_942_10000_0.6786_0.412_0.7398.png
                gene_name: OR2M5
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 79 percent done.
OR2T27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.892703e-02	ci left: 6.379438e-01	ci right 6.567703e-01	k: 6474	n:10000
Cons ci ratio: 5.071561e-02	ci left: 3.644048e-01	ci right 3.834687e-01	k: 3739	n:10000
KS ci ratio: 9.706602e-03	ci left: 9.375495e-01	ci right 9.467908e-01	k: 9423	n:10000
OR2T27   10000 perm   1 sec   (7021 perm/sec)   p_kst 9.423000e-01   p_cons 3.739000e-01   p_joint 6.474000e-01

Outputting figure to mutsig2_images.part000000000121/OR2T27.3_957_10000_0.9423_0.3739_0.6474.png
                gene_name: OR2T27
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 80 percent done.
OR2T29
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.184154e-01	ci left: 6.884481e-03	ci right 1.061018e-02	k: 86	n:10000
Cons ci ratio: 4.578402e-02	ci left: 4.131910e-01	ci right 4.326539e-01	k: 4229	n:10000
KS ci ratio: 7.533478e-01	ci left: 1.699088e-03	ci right 3.807298e-03	k: 26	n:10000
OR2T29   10000 perm   2 sec   (6391 perm/sec)   p_kst 2.600000e-03   p_cons 4.229000e-01   p_joint 8.600000e-03

Joint ci ratio: 1.927994e-01	ci left: 1.829524e-02	ci right 2.224596e-02	k: 404	n:20000
Cons ci ratio: 3.254684e-02	ci left: 4.134960e-01	ci right 4.272272e-01	k: 8407	n:20000
KS ci ratio: 4.892032e-01	ci left: 2.421370e-03	ci right 4.028444e-03	k: 63	n:20000
OR2T29   20000 perm   4 sec   (5661 perm/sec)   p_kst 3.150000e-03   p_cons 4.203500e-01   p_joint 2.020000e-02

Joint ci ratio: 2.255632e-01	ci left: 8.842131e-03	ci right 1.112094e-02	k: 298	n:30000
Cons ci ratio: 2.653615e-02	ci left: 4.154709e-01	ci right 4.266777e-01	k: 12632	n:30000
KS ci ratio: 4.102971e-01	ci left: 2.413024e-03	ci right 3.686241e-03	k: 90	n:30000
OR2T29   30000 perm   6 sec   (5401 perm/sec)   p_kst 3.000000e-03   p_cons 4.210667e-01   p_joint 9.933333e-03

Joint ci ratio: 2.400017e-01	ci left: 5.829977e-03	ci right 7.442902e-03	k: 264	n:40000
Cons ci ratio: 2.286233e-02	ci left: 4.187508e-01	ci right 4.284603e-01	k: 16944	n:40000
KS ci ratio: 3.558198e-01	ci left: 2.487905e-03	ci right 3.586211e-03	k: 120	n:40000
OR2T29   40000 perm   8 sec   (5228 perm/sec)   p_kst 3.000000e-03   p_cons 4.236000e-01   p_joint 6.600000e-03

Joint ci ratio: 2.260184e-01	ci left: 5.304146e-03	ci right 6.674164e-03	k: 298	n:50000
Cons ci ratio: 2.045557e-02	ci left: 4.191036e-01	ci right 4.277853e-01	k: 21172	n:50000
KS ci ratio: 3.103785e-01	ci left: 2.687090e-03	ci right 3.691962e-03	k: 158	n:50000
OR2T29   50000 perm   10 sec   (5081 perm/sec)   p_kst 3.160000e-03   p_cons 4.234400e-01   p_joint 5.960000e-03

Joint ci ratio: 1.650228e-01	ci left: 8.547432e-03	ci right 1.010059e-02	k: 558	n:60000
Cons ci ratio: 1.866029e-02	ci left: 4.198248e-01	ci right 4.277493e-01	k: 25427	n:60000
KS ci ratio: 2.817113e-01	ci left: 2.763933e-03	ci right 3.685156e-03	k: 192	n:60000
OR2T29   60000 perm   12 sec   (4954 perm/sec)   p_kst 3.200000e-03   p_cons 4.237833e-01   p_joint 9.300000e-03

Joint ci ratio: 1.777485e-01	ci left: 6.286488e-03	ci right 7.526345e-03	k: 482	n:70000
Cons ci ratio: 1.728364e-02	ci left: 4.199071e-01	ci right 4.272421e-01	k: 29650	n:70000
KS ci ratio: 2.675539e-01	ci left: 2.648417e-03	ci right 3.479337e-03	k: 213	n:70000
OR2T29   70000 perm   14 sec   (4840 perm/sec)   p_kst 3.042857e-03   p_cons 4.235714e-01   p_joint 6.885714e-03

Joint ci ratio: 1.313381e-01	ci left: 1.028876e-02	ci right 1.174703e-02	k: 880	n:80000
Cons ci ratio: 1.617061e-02	ci left: 4.200476e-01	ci right 4.269079e-01	k: 33878	n:80000
KS ci ratio: 2.581037e-01	ci left: 2.504166e-03	ci right 3.257603e-03	k: 229	n:80000
OR2T29   80000 perm   17 sec   (4732 perm/sec)   p_kst 2.862500e-03   p_cons 4.234750e-01   p_joint 1.100000e-02

Joint ci ratio: 1.420630e-01	ci left: 7.792634e-03	ci right 8.994931e-03	k: 754	n:90000
Cons ci ratio: 1.527875e-02	ci left: 4.191922e-01	ci right 4.256573e-01	k: 38018	n:90000
KS ci ratio: 2.456140e-01	ci left: 2.475764e-03	ci right 3.179111e-03	k: 253	n:90000
OR2T29   90000 perm   19 sec   (4635 perm/sec)   p_kst 2.811111e-03   p_cons 4.224222e-01   p_joint 8.377778e-03

Joint ci ratio: 1.421231e-01	ci left: 7.013168e-03	ci right 8.095690e-03	k: 754	n:100000
Cons ci ratio: 1.448203e-02	ci left: 4.197854e-01	ci right 4.259191e-01	k: 42285	n:100000
KS ci ratio: 2.331021e-01	ci left: 2.491407e-03	ci right 3.157950e-03	k: 281	n:100000
OR2T29   100000 perm   22 sec   (4548 perm/sec)   p_kst 2.810000e-03   p_cons 4.228500e-01   p_joint 7.540000e-03

Joint ci ratio: 1.323733e-01	ci left: 7.385291e-03	ci right 8.440902e-03	k: 869	n:110000
Cons ci ratio: 1.382263e-02	ci left: 4.194150e-01	ci right 4.252618e-01	k: 46457	n:110000
KS ci ratio: 2.209014e-01	ci left: 2.539299e-03	ci right 3.178269e-03	k: 313	n:110000
OR2T29   110000 perm   25 sec   (4455 perm/sec)   p_kst 2.845455e-03   p_cons 4.223364e-01   p_joint 7.900000e-03

Joint ci ratio: 1.275593e-01	ci left: 7.310015e-03	ci right 8.313991e-03	k: 936	n:120000
Cons ci ratio: 1.323020e-02	ci left: 4.196863e-01	ci right 4.252841e-01	k: 50698	n:120000
KS ci ratio: 2.110482e-01	ci left: 2.564177e-03	ci right 3.176906e-03	k: 343	n:120000
OR2T29   120000 perm   27 sec   (4369 perm/sec)   p_kst 2.858333e-03   p_cons 4.224833e-01   p_joint 7.800000e-03

Joint ci ratio: 1.248106e-01	ci left: 7.060527e-03	ci right 8.007793e-03	k: 978	n:130000
Cons ci ratio: 1.270754e-02	ci left: 4.199357e-01	ci right 4.253139e-01	k: 54941	n:130000
KS ci ratio: 2.010624e-01	ci left: 2.622286e-03	ci right 3.215616e-03	k: 378	n:130000
OR2T29   130000 perm   30 sec   (4286 perm/sec)   p_kst 2.907692e-03   p_cons 4.226231e-01   p_joint 7.523077e-03

Joint ci ratio: 1.349268e-01	ci left: 5.588349e-03	ci right 6.403744e-03	k: 838	n:140000
Cons ci ratio: 1.224427e-02	ci left: 4.200747e-01	ci right 4.252570e-01	k: 59173	n:140000
KS ci ratio: 1.933106e-01	ci left: 2.645482e-03	ci right 3.218269e-03	k: 409	n:140000
OR2T29   140000 perm   33 sec   (4207 perm/sec)   p_kst 2.921429e-03   p_cons 4.226643e-01   p_joint 5.985714e-03

Joint ci ratio: 1.552303e-01	ci left: 3.904639e-03	ci right 4.568083e-03	k: 634	n:150000
Cons ci ratio: 1.183033e-02	ci left: 4.201117e-01	ci right 4.251180e-01	k: 63392	n:150000
KS ci ratio: 1.863914e-01	ci left: 2.665966e-03	ci right 3.220191e-03	k: 440	n:150000
OR2T29   150000 perm   36 sec   (4138 perm/sec)   p_kst 2.933333e-03   p_cons 4.226133e-01   p_joint 4.226667e-03

Joint ci ratio: 1.126879e-01	ci left: 7.083068e-03	ci right 7.934924e-03	k: 1200	n:160000
Cons ci ratio: 1.144707e-02	ci left: 4.205151e-01	ci right 4.253627e-01	k: 67670	n:160000
KS ci ratio: 1.792162e-01	ci left: 2.714056e-03	ci right 3.254203e-03	k: 476	n:160000
OR2T29   160000 perm   39 sec   (4071 perm/sec)   p_kst 2.975000e-03   p_cons 4.229375e-01   p_joint 7.500000e-03

Joint ci ratio: 1.094991e-01	ci left: 7.072457e-03	ci right 7.897414e-03	k: 1271	n:170000
Cons ci ratio: 1.110067e-02	ci left: 4.207910e-01	ci right 4.254940e-01	k: 71934	n:170000
KS ci ratio: 1.740052e-01	ci left: 2.717454e-03	ci right 3.240900e-03	k: 505	n:170000
OR2T29   170000 perm   42 sec   (4004 perm/sec)   p_kst 2.970588e-03   p_cons 4.231412e-01   p_joint 7.476471e-03

Joint ci ratio: 1.096088e-01	ci left: 6.668660e-03	ci right 7.447343e-03	k: 1269	n:180000
Cons ci ratio: 1.078208e-02	ci left: 4.211215e-01	ci right 4.256921e-01	k: 76213	n:180000
KS ci ratio: 1.687500e-01	ci left: 2.736640e-03	ci right 3.246242e-03	k: 537	n:180000
OR2T29   180000 perm   46 sec   (3940 perm/sec)   p_kst 2.983333e-03   p_cons 4.234056e-01   p_joint 7.050000e-03

Joint ci ratio: 9.984508e-02	ci left: 7.645385e-03	ci right 8.453943e-03	k: 1528	n:190000
Cons ci ratio: 1.049157e-02	ci left: 4.213189e-01	ci right 4.257677e-01	k: 80473	n:190000
KS ci ratio: 1.633699e-01	ci left: 2.774211e-03	ci right 3.272722e-03	k: 573	n:190000
OR2T29   190000 perm   49 sec   (3879 perm/sec)   p_kst 3.015789e-03   p_cons 4.235421e-01   p_joint 8.042105e-03

Joint ci ratio: 1.055437e-01	ci left: 6.488312e-03	ci right 7.216092e-03	k: 1369	n:200000
Cons ci ratio: 1.021864e-02	ci left: 4.217228e-01	ci right 4.260594e-01	k: 84778	n:200000
KS ci ratio: 1.595262e-01	ci left: 2.769844e-03	ci right 3.254738e-03	k: 601	n:200000
OR2T29   200000 perm   52 sec   (3819 perm/sec)   p_kst 3.005000e-03   p_cons 4.238900e-01   p_joint 6.845000e-03

Joint ci ratio: 1.061081e-01	ci left: 6.114380e-03	ci right 6.804111e-03	k: 1355	n:210000
Cons ci ratio: 9.971981e-03	ci left: 4.217946e-01	ci right 4.260265e-01	k: 89021	n:210000
KS ci ratio: 1.558177e-01	ci left: 2.770594e-03	ci right 3.243290e-03	k: 630	n:210000
OR2T29   210000 perm   56 sec   (3762 perm/sec)   p_kst 3.000000e-03   p_cons 4.239095e-01   p_joint 6.452381e-03

Joint ci ratio: 9.619970e-02	ci left: 7.130394e-03	ci right 7.855400e-03	k: 1647	n:220000
Cons ci ratio: 9.742087e-03	ci left: 4.218746e-01	ci right 4.260092e-01	k: 93267	n:220000
KS ci ratio: 1.525885e-01	ci left: 2.762649e-03	ci right 3.223328e-03	k: 657	n:220000
OR2T29   220000 perm   59 sec   (3706 perm/sec)   p_kst 2.986364e-03   p_cons 4.239409e-01   p_joint 7.486364e-03

Joint ci ratio: 9.369989e-02	ci left: 7.198157e-03	ci right 7.909990e-03	k: 1736	n:230000
Cons ci ratio: 9.527394e-03	ci left: 4.219487e-01	ci right 4.259923e-01	k: 97513	n:230000
KS ci ratio: 1.480422e-01	ci left: 2.814096e-03	ci right 3.268136e-03	k: 698	n:230000
OR2T29   230000 perm   63 sec   (3654 perm/sec)   p_kst 3.034783e-03   p_cons 4.239696e-01   p_joint 7.547826e-03

Joint ci ratio: 8.933743e-02	ci left: 7.602645e-03	ci right 8.317648e-03	k: 1909	n:240000
Cons ci ratio: 9.325500e-03	ci left: 4.220592e-01	ci right 4.260177e-01	k: 101769	n:240000
KS ci ratio: 1.443695e-01	ci left: 2.841358e-03	ci right 3.287444e-03	k: 734	n:240000
OR2T29   240000 perm   67 sec   (3604 perm/sec)   p_kst 3.058333e-03   p_cons 4.240375e-01   p_joint 7.954167e-03

Joint ci ratio: 8.754539e-02	ci left: 7.607551e-03	ci right 8.307929e-03	k: 1988	n:250000
Cons ci ratio: 9.133228e-03	ci left: 4.223056e-01	ci right 4.261842e-01	k: 106061	n:250000
KS ci ratio: 1.411410e-01	ci left: 2.858848e-03	ci right 3.296798e-03	k: 768	n:250000
OR2T29   250000 perm   70 sec   (3554 perm/sec)   p_kst 3.072000e-03   p_cons 4.242440e-01   p_joint 7.952000e-03

Joint ci ratio: 6.093198e-02	ci left: 1.519155e-02	ci right 1.615006e-02	k: 4073	n:260000
Cons ci ratio: 8.953222e-03	ci left: 4.224876e-01	ci right 4.262910e-01	k: 110341	n:260000
KS ci ratio: 1.383793e-01	ci left: 2.863955e-03	ci right 3.293395e-03	k: 799	n:260000
OR2T29   260000 perm   74 sec   (3505 perm/sec)   p_kst 3.073077e-03   p_cons 4.243885e-01   p_joint 1.566538e-02

Joint ci ratio: 6.103365e-02	ci left: 1.458864e-02	ci right 1.551070e-02	k: 4062	n:270000
Cons ci ratio: 8.785119e-03	ci left: 4.225643e-01	ci right 4.262966e-01	k: 114596	n:270000
KS ci ratio: 1.361852e-01	ci left: 2.850870e-03	ci right 3.271020e-03	k: 825	n:270000
OR2T29   270000 perm   78 sec   (3457 perm/sec)   p_kst 3.055556e-03   p_cons 4.244296e-01   p_joint 1.504444e-02

Joint ci ratio: 6.237200e-02	ci left: 1.347664e-02	ci right 1.434775e-02	k: 3894	n:280000
Cons ci ratio: 8.626080e-03	ci left: 4.226397e-01	ci right 4.263047e-01	k: 118852	n:280000
KS ci ratio: 1.329237e-01	ci left: 2.890557e-03	ci right 3.305548e-03	k: 866	n:280000
OR2T29   280000 perm   82 sec   (3409 perm/sec)   p_kst 3.092857e-03   p_cons 4.244714e-01   p_joint 1.390714e-02

Joint ci ratio: 6.135747e-02	ci left: 1.345326e-02	ci right 1.430822e-02	k: 4024	n:290000
Cons ci ratio: 8.480283e-03	ci left: 4.224279e-01	ci right 4.260288e-01	k: 123026	n:290000
KS ci ratio: 1.306822e-01	ci left: 2.890920e-03	ci right 3.298421e-03	k: 896	n:290000
OR2T29   290000 perm   86 sec   (3362 perm/sec)   p_kst 3.089655e-03   p_cons 4.242276e-01   p_joint 1.387586e-02

Joint ci ratio: 5.876289e-02	ci left: 1.418696e-02	ci right 1.504912e-02	k: 4384	n:300000
Cons ci ratio: 8.332930e-03	ci left: 4.227404e-01	ci right 4.262811e-01	k: 127353	n:300000
KS ci ratio: 1.287596e-01	ci left: 2.881634e-03	ci right 3.281394e-03	k: 923	n:300000
OR2T29   300000 perm   90 sec   (3316 perm/sec)   p_kst 3.076667e-03   p_cons 4.245100e-01   p_joint 1.461333e-02

Joint ci ratio: 5.930738e-02	ci left: 1.348445e-02	ci right 1.431177e-02	k: 4307	n:310000
Cons ci ratio: 8.197650e-03	ci left: 4.227560e-01	ci right 4.262390e-01	k: 131594	n:310000
KS ci ratio: 1.270535e-01	ci left: 2.866742e-03	ci right 3.258768e-03	k: 948	n:310000
OR2T29   310000 perm   95 sec   (3273 perm/sec)   p_kst 3.058065e-03   p_cons 4.244968e-01   p_joint 1.389355e-02

Joint ci ratio: 5.920215e-02	ci left: 1.311532e-02	ci right 1.391852e-02	k: 4324	n:320000
Cons ci ratio: 8.065449e-03	ci left: 4.229709e-01	ci right 4.263992e-01	k: 135899	n:320000
KS ci ratio: 1.247726e-01	ci left: 2.883087e-03	ci right 3.269748e-03	k: 983	n:320000
OR2T29   320000 perm   99 sec   (3231 perm/sec)   p_kst 3.071875e-03   p_cons 4.246844e-01   p_joint 1.351250e-02

Joint ci ratio: 6.298084e-02	ci left: 1.123745e-02	ci right 1.197117e-02	k: 3828	n:330000
Cons ci ratio: 7.943925e-03	ci left: 4.228976e-01	ci right 4.262734e-01	k: 140113	n:330000
KS ci ratio: 1.228524e-01	ci left: 2.886751e-03	ci right 3.267512e-03	k: 1014	n:330000
OR2T29   330000 perm   103 sec   (3191 perm/sec)   p_kst 3.072727e-03   p_cons 4.245848e-01   p_joint 1.160000e-02

Joint ci ratio: 5.475078e-02	ci left: 1.444611e-02	ci right 1.526219e-02	k: 5049	n:340000
Cons ci ratio: 7.824859e-03	ci left: 4.230083e-01	ci right 4.263342e-01	k: 144388	n:340000
KS ci ratio: 1.214850e-01	ci left: 2.867425e-03	ci right 3.241124e-03	k: 1037	n:340000
OR2T29   340000 perm   108 sec   (3152 perm/sec)   p_kst 3.050000e-03   p_cons 4.246706e-01   p_joint 1.485000e-02

Joint ci ratio: 5.079942e-02	ci left: 1.630343e-02	ci right 1.715602e-02	k: 5854	n:350000
Cons ci ratio: 7.711892e-03	ci left: 4.230559e-01	ci right 4.263339e-01	k: 148643	n:350000
KS ci ratio: 1.193750e-01	ci left: 2.888030e-03	ci right 3.257416e-03	k: 1074	n:350000
OR2T29   350000 perm   112 sec   (3113 perm/sec)   p_kst 3.068571e-03   p_cons 4.246943e-01   p_joint 1.672571e-02

Joint ci ratio: 5.018342e-02	ci left: 1.624824e-02	ci right 1.708734e-02	k: 5999	n:360000
Cons ci ratio: 7.606491e-03	ci left: 4.229207e-01	ci right 4.261527e-01	k: 152833	n:360000
KS ci ratio: 1.182274e-01	ci left: 2.864405e-03	ci right 3.227001e-03	k: 1095	n:360000
OR2T29   360000 perm   117 sec   (3076 perm/sec)   p_kst 3.041667e-03   p_cons 4.245361e-01   p_joint 1.666389e-02

Joint ci ratio: 4.874509e-02	ci left: 1.675947e-02	ci right 1.759947e-02	k: 6355	n:370000
Cons ci ratio: 7.501809e-03	ci left: 4.230201e-01	ci right 4.262081e-01	k: 157107	n:370000
KS ci ratio: 1.164863e-01	ci left: 2.873560e-03	ci right 3.231590e-03	k: 1128	n:370000
OR2T29   370000 perm   122 sec   (3039 perm/sec)   p_kst 3.048649e-03   p_cons 4.246135e-01   p_joint 1.717568e-02

Joint ci ratio: 4.911510e-02	ci left: 1.608175e-02	ci right 1.689407e-02	k: 6264	n:380000
Cons ci ratio: 7.405520e-03	ci left: 4.228383e-01	ci right 4.259839e-01	k: 161276	n:380000
KS ci ratio: 1.151185e-01	ci left: 2.866934e-03	ci right 3.219659e-03	k: 1155	n:380000
OR2T29   380000 perm   127 sec   (3003 perm/sec)   p_kst 3.039474e-03   p_cons 4.244105e-01   p_joint 1.648421e-02

Joint ci ratio: 4.918154e-02	ci left: 1.563385e-02	ci right 1.642465e-02	k: 6250	n:390000
Cons ci ratio: 7.305441e-03	ci left: 4.231608e-01	ci right 4.262660e-01	k: 165638	n:390000
KS ci ratio: 1.140397e-01	ci left: 2.848215e-03	ci right 3.195132e-03	k: 1177	n:390000
OR2T29   390000 perm   131 sec   (2968 perm/sec)   p_kst 3.017949e-03   p_cons 4.247128e-01   p_joint 1.602564e-02

Joint ci ratio: 4.988101e-02	ci left: 1.482558e-02	ci right 1.558646e-02	k: 6081	n:400000
Cons ci ratio: 7.446353e-03	ci left: 4.077456e-01	ci right 4.107957e-01	k: 163708	n:400000
KS ci ratio: 1.126615e-01	ci left: 2.847454e-03	ci right 3.189808e-03	k: 1206	n:400000
OR2T29   400000 perm   136 sec   (2935 perm/sec)   p_kst 3.015000e-03   p_cons 4.092700e-01   p_joint 1.520250e-02

Joint ci ratio: 4.999481e-02	ci left: 1.440369e-02	ci right 1.514465e-02	k: 6056	n:410000
Cons ci ratio: 7.354898e-03	ci left: 4.077700e-01	ci right 4.107825e-01	k: 167803	n:410000
KS ci ratio: 1.114226e-01	ci left: 2.842012e-03	ci right 3.179707e-03	k: 1233	n:410000
OR2T29   410000 perm   141 sec   (2901 perm/sec)   p_kst 3.007317e-03   p_cons 4.092756e-01   p_joint 1.477073e-02

Joint ci ratio: 5.244239e-02	ci left: 1.278415e-02	ci right 1.347497e-02	k: 5513	n:420000
Cons ci ratio: 7.268487e-03	ci left: 4.076767e-01	ci right 4.106531e-01	k: 171849	n:420000
KS ci ratio: 1.100488e-01	ci left: 2.846110e-03	ci right 3.179852e-03	k: 1264	n:420000
OR2T29   420000 perm   146 sec   (2868 perm/sec)   p_kst 3.009524e-03   p_cons 4.091643e-01   p_joint 1.312619e-02

Joint ci ratio: 5.260049e-02	ci left: 1.241564e-02	ci right 1.308863e-02	k: 5482	n:430000
Cons ci ratio: 7.181319e-03	ci left: 4.078391e-01	ci right 4.107807e-01	k: 176003	n:430000
KS ci ratio: 1.088510e-01	ci left: 2.843255e-03	ci right 3.172801e-03	k: 1292	n:430000
OR2T29   430000 perm   152 sec   (2837 perm/sec)   p_kst 3.004651e-03   p_cons 4.093093e-01   p_joint 1.274884e-02

Joint ci ratio: 5.191275e-02	ci left: 1.246095e-02	ci right 1.312730e-02	k: 5628	n:440000
Cons ci ratio: 7.099648e-03	ci left: 4.078284e-01	ci right 4.107364e-01	k: 180084	n:440000
KS ci ratio: 1.067632e-01	ci left: 2.891423e-03	ci right 3.219720e-03	k: 1343	n:440000
OR2T29   440000 perm   157 sec   (2805 perm/sec)   p_kst 3.052273e-03   p_cons 4.092818e-01   p_joint 1.279091e-02

Joint ci ratio: 4.978704e-02	ci left: 1.325045e-02	ci right 1.392917e-02	k: 6114	n:450000
Cons ci ratio: 7.020379e-03	ci left: 4.078406e-01	ci right 4.107161e-01	k: 184175	n:450000
KS ci ratio: 1.057846e-01	ci left: 2.881247e-03	ci right 3.205204e-03	k: 1368	n:450000
OR2T29   450000 perm   162 sec   (2773 perm/sec)   p_kst 3.040000e-03   p_cons 4.092778e-01   p_joint 1.358667e-02

Joint ci ratio: 4.976152e-02	ci left: 1.297952e-02	ci right 1.364402e-02	k: 6122	n:460000
Cons ci ratio: 6.944738e-03	ci left: 4.077808e-01	ci right 4.106247e-01	k: 188233	n:460000
KS ci ratio: 1.050593e-01	ci left: 2.858825e-03	ci right 3.177921e-03	k: 1387	n:460000
OR2T29   460000 perm   168 sec   (2742 perm/sec)   p_kst 3.015217e-03   p_cons 4.092022e-01   p_joint 1.330870e-02

Joint ci ratio: 4.955589e-02	ci left: 1.281260e-02	ci right 1.346576e-02	k: 6174	n:470000
Cons ci ratio: 6.870794e-03	ci left: 4.077726e-01	ci right 4.105860e-01	k: 192314	n:470000
KS ci ratio: 1.039421e-01	ci left: 2.860160e-03	ci right 3.175803e-03	k: 1417	n:470000
OR2T29   470000 perm   173 sec   (2713 perm/sec)   p_kst 3.014894e-03   p_cons 4.091787e-01   p_joint 1.313617e-02

Joint ci ratio: 4.944528e-02	ci left: 1.260531e-02	ci right 1.324642e-02	k: 6203	n:480000
Cons ci ratio: 6.799368e-03	ci left: 4.077502e-01	ci right 4.105342e-01	k: 196388	n:480000
KS ci ratio: 1.027885e-01	ci left: 2.865517e-03	ci right 3.178029e-03	k: 1449	n:480000
OR2T29   480000 perm   179 sec   (2685 perm/sec)   p_kst 3.018750e-03   p_cons 4.091417e-01   p_joint 1.292292e-02

Joint ci ratio: 4.908063e-02	ci left: 1.253550e-02	ci right 1.316823e-02	k: 6296	n:490000
Cons ci ratio: 6.727824e-03	ci left: 4.078942e-01	ci right 4.106497e-01	k: 200543	n:490000
KS ci ratio: 1.015352e-01	ci left: 2.878631e-03	ci right 3.188516e-03	k: 1485	n:490000
OR2T29   490000 perm   184 sec   (2658 perm/sec)   p_kst 3.030612e-03   p_cons 4.092714e-01   p_joint 1.284898e-02

Joint ci ratio: 4.881298e-02	ci left: 1.242306e-02	ci right 1.304660e-02	k: 6366	n:500000
Cons ci ratio: 6.659565e-03	ci left: 4.079546e-01	ci right 4.106824e-01	k: 204659	n:500000
KS ci ratio: 1.006255e-01	ci left: 2.873692e-03	ci right 3.180111e-03	k: 1512	n:500000
OR2T29   500000 perm   190 sec   (2631 perm/sec)   p_kst 3.024000e-03   p_cons 4.093180e-01   p_joint 1.273200e-02

Joint ci ratio: 4.841647e-02	ci left: 1.238285e-02	ci right 1.299918e-02	k: 6471	n:510000
Cons ci ratio: 6.594278e-03	ci left: 4.079442e-01	ci right 4.106451e-01	k: 208740	n:510000
KS ci ratio: 9.944877e-02	ci left: 2.886169e-03	ci right 3.190109e-03	k: 1548	n:510000
OR2T29   510000 perm   196 sec   (2603 perm/sec)   p_kst 3.035294e-03   p_cons 4.092941e-01   p_joint 1.268824e-02

Outputting figure to mutsig2_images.part000000000121/OR2T29.3_934_510000_0.0030353_0.40929_0.012688.png
                gene_name: OR2T29
               theta_stop: 0.099 
                    nperm: 510000 
                     p_ks: 0.0030 
        ci_ks_bounds_left: 0.0029 
       ci_ks_bounds_right: 0.0032 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.013 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.013 

Current progress: 81 percent done.
OR2W1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.363681e-02	ci left: 1.725141e-01	ci right 1.876728e-01	k: 1800	n:10000
Cons ci ratio: 3.993788e-02	ci left: 4.807559e-01	ci right 5.004496e-01	k: 4906	n:10000
KS ci ratio: 1.098776e-01	ci left: 1.066631e-01	ci right 1.191634e-01	k: 1128	n:10000
OR2W1   10000 perm   2 sec   (6144 perm/sec)   p_kst 1.128000e-01   p_cons 4.906000e-01   p_joint 1.800000e-01

Joint ci ratio: 4.880350e-02	ci left: 2.379115e-01	ci right 2.498631e-01	k: 4877	n:20000
Cons ci ratio: 2.812131e-02	ci left: 4.857977e-01	ci right 4.997044e-01	k: 9855	n:20000
KS ci ratio: 7.717746e-02	ci left: 1.098234e-01	ci right 1.186891e-01	k: 2284	n:20000
OR2W1   20000 perm   4 sec   (5498 perm/sec)   p_kst 1.142000e-01   p_cons 4.927500e-01   p_joint 2.438500e-01

Outputting figure to mutsig2_images.part000000000121/OR2W1.3_967_20000_0.1142_0.49275_0.24385.png
                gene_name: OR2W1
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 83 percent done.
OR2W3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.685760e-02	ci left: 5.208609e-01	ci right 5.405212e-01	k: 5307	n:10000
Cons ci ratio: 8.103232e-03	ci left: 9.550321e-01	ci right 9.628976e-01	k: 9591	n:10000
KS ci ratio: 5.731428e-02	ci left: 3.094718e-01	ci right 3.278340e-01	k: 3186	n:10000
OR2W3   10000 perm   2 sec   (6378 perm/sec)   p_kst 3.186000e-01   p_cons 9.591000e-01   p_joint 5.307000e-01

Outputting figure to mutsig2_images.part000000000121/OR2W3.3_947_10000_0.3186_0.9591_0.5307.png
                gene_name: OR2W3
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 84 percent done.
OR2Z1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.752138e-02	ci left: 6.604841e-01	ci right 6.790169e-01	k: 6698	n:10000
Cons ci ratio: 6.794962e-02	ci left: 2.411415e-01	ci right 2.582045e-01	k: 2496	n:10000
KS ci ratio: 1.850394e-02	ci left: 8.100922e-01	ci right 8.253223e-01	k: 8178	n:10000
OR2Z1   10000 perm   2 sec   (6479 perm/sec)   p_kst 8.178000e-01   p_cons 2.496000e-01   p_joint 6.698000e-01

Outputting figure to mutsig2_images.part000000000121/OR2Z1.3_948_10000_0.8178_0.2496_0.6698.png
                gene_name: OR2Z1
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 85 percent done.
OR4D6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.854796e-02	ci left: 6.439792e-01	ci right 6.627314e-01	k: 6534	n:10000
KS ci ratio: 8.693458e-03	ci left: 9.488764e-01	ci right 9.572571e-01	k: 9532	n:10000
OR4D6   10000 perm   2 sec   (6494 perm/sec)   p_kst 9.532000e-01   p_cons 6.534000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000121/OR4D6.3_948_10000_0.9532_0.6534_1.png
                gene_name: OR4D6
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
OR4K13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.365594e-02	ci left: 5.658420e-01	ci right 5.853140e-01	k: 5756	n:10000
Cons ci ratio: 6.413009e-02	ci left: 2.631968e-01	ci right 2.807362e-01	k: 2719	n:10000
KS ci ratio: 3.093384e-02	ci left: 6.065858e-01	ci right 6.257465e-01	k: 6162	n:10000
OR4K13   10000 perm   2 sec   (6539 perm/sec)   p_kst 6.162000e-01   p_cons 2.719000e-01   p_joint 5.756000e-01

Outputting figure to mutsig2_images.part000000000121/OR4K13.3_917_10000_0.6162_0.2719_0.5756.png
                gene_name: OR4K13
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 88 percent done.
OR2A7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.946119e-02	ci left: 6.294971e-01	ci right 6.484219e-01	k: 6390	n:10000
Cons ci ratio: 3.697613e-02	ci left: 5.192595e-01	ci right 5.389235e-01	k: 5291	n:10000
KS ci ratio: 1.302694e-02	ci left: 8.945686e-01	ci right 9.063969e-01	k: 9006	n:10000
OR2A7   10000 perm   1 sec   (6772 perm/sec)   p_kst 9.006000e-01   p_cons 5.291000e-01   p_joint 6.390000e-01

Outputting figure to mutsig2_images.part000000000121/OR2A7.2_936_10000_0.9006_0.5291_0.639.png
                gene_name: OR2A7
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 89 percent done.
OR2AT4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.894940e-02	ci left: 8.027803e-01	ci right 8.182384e-01	k: 8106	n:10000
KS ci ratio: 3.059483e-02	ci left: 6.118092e-01	ci right 6.309201e-01	k: 6214	n:10000
OR2AT4   10000 perm   1 sec   (6686 perm/sec)   p_kst 6.214000e-01   p_cons 8.106000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000121/OR2AT4.2_966_10000_0.6214_0.8106_1.png
                gene_name: OR2AT4
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
OR2H1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.019175e-03	ci left: 9.925085e-01	ci right 9.955930e-01	k: 9942	n:10000
Cons ci ratio: 6.590188e-03	ci left: 9.692095e-01	ci right 9.757113e-01	k: 9726	n:10000
KS ci ratio: 2.709942e-02	ci left: 6.673314e-01	ci right 6.857657e-01	k: 6766	n:10000
OR2H1   10000 perm   1 sec   (6690 perm/sec)   p_kst 6.766000e-01   p_cons 9.726000e-01   p_joint 9.942000e-01

Outputting figure to mutsig2_images.part000000000121/OR2H1.2_955_10000_0.6766_0.9726_0.9942.png
                gene_name: OR2H1
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 1.00 

Current progress: 92 percent done.
OR2S2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.726672e-02	ci left: 6.646124e-01	ci right 6.830863e-01	k: 6739	n:10000
Cons ci ratio: 3.427287e-02	ci left: 5.569195e-01	ci right 5.764416e-01	k: 5667	n:10000
KS ci ratio: 2.881942e-02	ci left: 6.396537e-01	ci right 6.584594e-01	k: 6491	n:10000
OR2S2   10000 perm   1 sec   (6918 perm/sec)   p_kst 6.491000e-01   p_cons 5.667000e-01   p_joint 6.739000e-01

Outputting figure to mutsig2_images.part000000000121/OR2S2.2_964_10000_0.6491_0.5667_0.6739.png
                gene_name: OR2S2
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 93 percent done.
OR2T5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.130871e+00	ci left: 5.492399e-04	ci right 1.967349e-03	k: 11	n:10000
Cons ci ratio: 2.290325e-02	ci left: 7.368421e-01	ci right 7.540147e-01	k: 7455	n:10000
KS ci ratio: 1.130871e+00	ci left: 5.492399e-04	ci right 1.967349e-03	k: 11	n:10000
OR2T5   10000 perm   2 sec   (6657 perm/sec)   p_kst 1.100000e-03   p_cons 7.455000e-01   p_joint 1.100000e-03

Joint ci ratio: 8.352662e-01	ci left: 6.500803e-04	ci right 1.604591e-03	k: 21	n:20000
Cons ci ratio: 1.751044e-02	ci left: 7.084363e-01	ci right 7.210012e-01	k: 14295	n:20000
KS ci ratio: 8.352662e-01	ci left: 6.500803e-04	ci right 1.604591e-03	k: 21	n:20000
OR2T5   20000 perm   3 sec   (5901 perm/sec)   p_kst 1.050000e-03   p_cons 7.147500e-01   p_joint 1.050000e-03

Joint ci ratio: 7.404523e-01	ci left: 5.931868e-04	ci right 1.309185e-03	k: 27	n:30000
Cons ci ratio: 1.429908e-02	ci left: 7.095530e-01	ci right 7.198054e-01	k: 21441	n:30000
KS ci ratio: 7.404523e-01	ci left: 5.931868e-04	ci right 1.309185e-03	k: 27	n:30000
OR2T5   30000 perm   5 sec   (5627 perm/sec)   p_kst 9.000000e-04   p_cons 7.147000e-01   p_joint 9.000000e-04

Joint ci ratio: 6.719803e-01	ci left: 5.679580e-04	ci right 1.158413e-03	k: 33	n:40000
Cons ci ratio: 1.245555e-02	ci left: 7.078610e-01	ci right 7.167581e-01	k: 28493	n:40000
KS ci ratio: 6.719803e-01	ci left: 5.679580e-04	ci right 1.158413e-03	k: 33	n:40000
OR2T5   40000 perm   7 sec   (5418 perm/sec)   p_kst 8.250000e-04   p_cons 7.123250e-01   p_joint 8.250000e-04

Joint ci ratio: 6.356599e-01	ci left: 5.210801e-04	ci right 1.019850e-03	k: 37	n:50000
Cons ci ratio: 1.117555e-02	ci left: 7.070447e-01	ci right 7.150108e-01	k: 35552	n:50000
KS ci ratio: 6.356599e-01	ci left: 5.210801e-04	ci right 1.019850e-03	k: 37	n:50000
OR2T5   50000 perm   10 sec   (5252 perm/sec)   p_kst 7.400000e-04   p_cons 7.110400e-01   p_joint 7.400000e-04

Joint ci ratio: 5.433661e-01	ci left: 6.329443e-04	ci right 1.117443e-03	k: 51	n:60000
Cons ci ratio: 1.023264e-02	ci left: 7.061501e-01	ci right 7.134296e-01	k: 42588	n:60000
KS ci ratio: 5.433661e-01	ci left: 6.329443e-04	ci right 1.117443e-03	k: 51	n:60000
OR2T5   60000 perm   12 sec   (5118 perm/sec)   p_kst 8.500000e-04   p_cons 7.098000e-01   p_joint 8.500000e-04

Joint ci ratio: 4.976164e-01	ci left: 6.666373e-04	ci right 1.119248e-03	k: 61	n:70000
Cons ci ratio: 9.451589e-03	ci left: 7.073825e-01	ci right 7.141143e-01	k: 49753	n:70000
KS ci ratio: 4.976164e-01	ci left: 6.666373e-04	ci right 1.119248e-03	k: 61	n:70000
OR2T5   70000 perm   14 sec   (4999 perm/sec)   p_kst 8.714286e-04   p_cons 7.107571e-01   p_joint 8.714286e-04

Joint ci ratio: 4.465076e-01	ci left: 7.485627e-04	ci right 1.188925e-03	k: 76	n:80000
Cons ci ratio: 8.866045e-03	ci left: 7.064406e-01	ci right 7.127442e-01	k: 56768	n:80000
KS ci ratio: 4.465076e-01	ci left: 7.485627e-04	ci right 1.188925e-03	k: 76	n:80000
OR2T5   80000 perm   16 sec   (4892 perm/sec)   p_kst 9.500000e-04   p_cons 7.096000e-01   p_joint 9.500000e-04

Joint ci ratio: 4.225001e-01	ci left: 7.544562e-04	ci right 1.167690e-03	k: 85	n:90000
Cons ci ratio: 8.362825e-03	ci left: 7.064325e-01	ci right 7.123762e-01	k: 63847	n:90000
KS ci ratio: 4.225001e-01	ci left: 7.544562e-04	ci right 1.167690e-03	k: 85	n:90000
OR2T5   90000 perm   19 sec   (4788 perm/sec)   p_kst 9.444444e-04   p_cons 7.094111e-01   p_joint 9.444444e-04

Joint ci ratio: 4.062940e-01	ci left: 7.417123e-04	ci right 1.128181e-03	k: 92	n:100000
Cons ci ratio: 7.938701e-03	ci left: 7.063241e-01	ci right 7.119637e-01	k: 70915	n:100000
KS ci ratio: 4.062940e-01	ci left: 7.417123e-04	ci right 1.128181e-03	k: 92	n:100000
OR2T5   100000 perm   21 sec   (4691 perm/sec)   p_kst 9.200000e-04   p_cons 7.091500e-01   p_joint 9.200000e-04

Joint ci ratio: 3.918200e-01	ci left: 7.315339e-04	ci right 1.095610e-03	k: 99	n:110000
Cons ci ratio: 7.568340e-03	ci left: 7.065063e-01	ci right 7.118827e-01	k: 78012	n:110000
KS ci ratio: 3.918200e-01	ci left: 7.315339e-04	ci right 1.095610e-03	k: 99	n:110000
OR2T5   110000 perm   24 sec   (4598 perm/sec)   p_kst 9.000000e-04   p_cons 7.092000e-01   p_joint 9.000000e-04

Joint ci ratio: 3.718963e-01	ci left: 7.534469e-04	ci right 1.104727e-03	k: 110	n:120000
Cons ci ratio: 7.245698e-03	ci left: 7.066464e-01	ci right 7.117935e-01	k: 85107	n:120000
KS ci ratio: 3.718963e-01	ci left: 7.534469e-04	ci right 1.104727e-03	k: 110	n:120000
OR2T5   120000 perm   27 sec   (4516 perm/sec)   p_kst 9.166667e-04   p_cons 7.092250e-01   p_joint 9.166667e-04

Joint ci ratio: 3.561964e-01	ci left: 7.653799e-04	ci right 1.103674e-03	k: 120	n:130000
Cons ci ratio: 6.963163e-03	ci left: 7.066458e-01	ci right 7.115911e-01	k: 92186	n:130000
KS ci ratio: 3.561964e-01	ci left: 7.653799e-04	ci right 1.103674e-03	k: 120	n:130000
OR2T5   130000 perm   29 sec   (4434 perm/sec)   p_kst 9.230769e-04   p_cons 7.091231e-01   p_joint 9.230769e-04

Joint ci ratio: 3.372160e-01	ci left: 8.020112e-04	ci right 1.133504e-03	k: 134	n:140000
Cons ci ratio: 6.713154e-03	ci left: 7.065340e-01	ci right 7.113002e-01	k: 99249	n:140000
KS ci ratio: 3.372160e-01	ci left: 8.020112e-04	ci right 1.133504e-03	k: 134	n:140000
OR2T5   140000 perm   32 sec   (4355 perm/sec)   p_kst 9.571429e-04   p_cons 7.089214e-01   p_joint 9.571429e-04

Joint ci ratio: 4.301554e-01	ci left: 4.348031e-04	ci right 6.785127e-04	k: 82	n:150000
Cons ci ratio: 6.494977e-03	ci left: 7.060124e-01	ci right 7.106195e-01	k: 106248	n:150000
KS ci ratio: 3.276495e-01	ci left: 7.974263e-04	ci right 1.115706e-03	k: 142	n:150000
OR2T5   150000 perm   35 sec   (4282 perm/sec)   p_kst 9.466667e-04   p_cons 7.083200e-01   p_joint 5.466667e-04

Joint ci ratio: 4.130868e-01	ci left: 4.467375e-04	ci right 6.844696e-04	k: 89	n:160000
Cons ci ratio: 6.287137e-03	ci left: 7.061912e-01	ci right 7.106513e-01	k: 113348	n:160000
KS ci ratio: 3.167607e-01	ci left: 8.050345e-04	ci right 1.113510e-03	k: 152	n:160000
OR2T5   160000 perm   38 sec   (4212 perm/sec)   p_kst 9.500000e-04   p_cons 7.084250e-01   p_joint 5.562500e-04

Joint ci ratio: 3.999692e-01	ci left: 4.521444e-04	ci right 6.830903e-04	k: 95	n:170000
Cons ci ratio: 6.092147e-03	ci left: 7.067518e-01	ci right 7.110764e-01	k: 120516	n:170000
KS ci ratio: 3.068900e-01	ci left: 8.119017e-04	ci right 1.111420e-03	k: 162	n:170000
OR2T5   170000 perm   41 sec   (4144 perm/sec)   p_kst 9.529412e-04   p_cons 7.089176e-01   p_joint 5.588235e-04

Joint ci ratio: 3.842755e-01	ci left: 4.670896e-04	ci right 6.939436e-04	k: 103	n:180000
Cons ci ratio: 5.919402e-03	ci left: 7.068899e-01	ci right 7.110922e-01	k: 127619	n:180000
KS ci ratio: 2.953358e-01	ci left: 8.335658e-04	ci right 1.127333e-03	k: 175	n:180000
OR2T5   180000 perm   44 sec   (4075 perm/sec)   p_kst 9.722222e-04   p_cons 7.089944e-01   p_joint 5.722222e-04

Joint ci ratio: 3.753592e-01	ci left: 4.663094e-04	ci right 6.862370e-04	k: 108	n:190000
Cons ci ratio: 5.766150e-03	ci left: 7.066143e-01	ci right 7.107057e-01	k: 134646	n:190000
KS ci ratio: 2.880630e-01	ci left: 8.335972e-04	ci right 1.118824e-03	k: 184	n:190000
OR2T5   190000 perm   47 sec   (4010 perm/sec)   p_kst 9.684211e-04   p_cons 7.086632e-01   p_joint 5.684211e-04

Joint ci ratio: 3.654359e-01	ci left: 4.702020e-04	ci right 6.847048e-04	k: 114	n:200000
Cons ci ratio: 5.624819e-03	ci left: 7.063224e-01	ci right 7.103115e-01	k: 141664	n:200000
KS ci ratio: 2.813024e-01	ci left: 8.337051e-04	ci right 1.111087e-03	k: 193	n:200000
OR2T5   200000 perm   51 sec   (3949 perm/sec)   p_kst 9.650000e-04   p_cons 7.083200e-01   p_joint 5.700000e-04

Joint ci ratio: 3.505103e-01	ci left: 4.911508e-04	ci right 7.039806e-04	k: 124	n:210000
Cons ci ratio: 5.489401e-03	ci left: 7.063602e-01	ci right 7.102531e-01	k: 148745	n:210000
KS ci ratio: 2.736504e-01	ci left: 8.427425e-04	ci right 1.114193e-03	k: 204	n:210000
OR2T5   210000 perm   54 sec   (3888 perm/sec)   p_kst 9.714286e-04   p_cons 7.083095e-01   p_joint 5.904762e-04

Joint ci ratio: 3.477425e-01	ci left: 4.771188e-04	ci right 6.818676e-04	k: 126	n:220000
Cons ci ratio: 5.362195e-03	ci left: 7.064821e-01	ci right 7.102851e-01	k: 155845	n:220000
KS ci ratio: 2.703760e-01	ci left: 8.256124e-04	ci right 1.087823e-03	k: 209	n:220000
OR2T5   220000 perm   57 sec   (3832 perm/sec)   p_kst 9.500000e-04   p_cons 7.083864e-01   p_joint 5.727273e-04

Joint ci ratio: 3.385370e-01	ci left: 4.841875e-04	ci right 6.852678e-04	k: 133	n:230000
Cons ci ratio: 5.241067e-03	ci left: 7.067817e-01	ci right 7.105000e-01	k: 162988	n:230000
KS ci ratio: 2.629656e-01	ci left: 8.384036e-04	ci right 1.096178e-03	k: 221	n:230000
OR2T5   230000 perm   61 sec   (3776 perm/sec)   p_kst 9.608696e-04   p_cons 7.086435e-01   p_joint 5.782609e-04

Joint ci ratio: 3.288611e-01	ci left: 4.945547e-04	ci right 6.928299e-04	k: 141	n:240000
Cons ci ratio: 5.136693e-03	ci left: 7.063391e-01	ci right 7.099808e-01	k: 169959	n:240000
KS ci ratio: 2.555868e-01	ci left: 8.541182e-04	ci right 1.108182e-03	k: 234	n:240000
OR2T5   240000 perm   65 sec   (3721 perm/sec)   p_kst 9.750000e-04   p_cons 7.081625e-01   p_joint 5.875000e-04

Joint ci ratio: 3.243261e-01	ci left: 4.894606e-04	ci right 6.824243e-04	k: 145	n:250000
Cons ci ratio: 5.035523e-03	ci left: 7.061612e-01	ci right 7.097300e-01	k: 176987	n:250000
KS ci ratio: 2.518646e-01	ci left: 8.461726e-04	ci right 1.093632e-03	k: 241	n:250000
OR2T5   250000 perm   68 sec   (3669 perm/sec)   p_kst 9.640000e-04   p_cons 7.079480e-01   p_joint 5.800000e-04

Joint ci ratio: 3.168193e-01	ci left: 4.953926e-04	ci right 6.852587e-04	k: 152	n:260000
Cons ci ratio: 4.940423e-03	ci left: 7.059706e-01	ci right 7.094709e-01	k: 184008	n:260000
KS ci ratio: 2.468166e-01	ci left: 8.496862e-04	ci right 1.092429e-03	k: 251	n:260000
OR2T5   260000 perm   72 sec   (3617 perm/sec)   p_kst 9.653846e-04   p_cons 7.077231e-01   p_joint 5.846154e-04

Joint ci ratio: 3.127585e-01	ci left: 4.906891e-04	ci right 6.758605e-04	k: 156	n:270000
Cons ci ratio: 4.852595e-03	ci left: 7.056168e-01	ci right 7.090528e-01	k: 190981	n:270000
KS ci ratio: 2.402318e-01	ci left: 8.669057e-04	ci right 1.106976e-03	k: 265	n:270000
OR2T5   270000 perm   76 sec   (3569 perm/sec)   p_kst 9.814815e-04   p_cons 7.073370e-01   p_joint 5.777778e-04

Joint ci ratio: 3.088499e-01	ci left: 4.863359e-04	ci right 6.671193e-04	k: 160	n:280000
Cons ci ratio: 4.764224e-03	ci left: 7.057288e-01	ci right 7.091026e-01	k: 198077	n:280000
KS ci ratio: 2.380074e-01	ci left: 8.527313e-04	ci right 1.086368e-03	k: 270	n:280000
OR2T5   280000 perm   80 sec   (3520 perm/sec)   p_kst 9.642857e-04   p_cons 7.074179e-01   p_joint 5.714286e-04

Joint ci ratio: 3.060135e-01	ci left: 4.791123e-04	ci right 6.552560e-04	k: 163	n:290000
Cons ci ratio: 4.680394e-03	ci left: 7.058440e-01	ci right 7.091588e-01	k: 205176	n:290000
KS ci ratio: 2.349929e-01	ci left: 8.460342e-04	ci right 1.074473e-03	k: 277	n:290000
OR2T5   290000 perm   84 sec   (3473 perm/sec)   p_kst 9.551724e-04   p_cons 7.075034e-01   p_joint 5.620690e-04

Joint ci ratio: 3.023494e-01	ci left: 4.754576e-04	ci right 6.477623e-04	k: 167	n:300000
Cons ci ratio: 4.601617e-03	ci left: 7.058818e-01	ci right 7.091408e-01	k: 212254	n:300000
KS ci ratio: 2.320901e-01	ci left: 8.398009e-04	ci right 1.063354e-03	k: 284	n:300000
OR2T5   300000 perm   88 sec   (3426 perm/sec)   p_kst 9.466667e-04   p_cons 7.075133e-01   p_joint 5.566667e-04

Joint ci ratio: 2.996867e-01	ci left: 4.690666e-04	ci right 6.372732e-04	k: 170	n:310000
Cons ci ratio: 4.526406e-03	ci left: 7.059435e-01	ci right 7.091494e-01	k: 219340	n:310000
KS ci ratio: 2.289002e-01	ci left: 8.370268e-04	ci right 1.056346e-03	k: 292	n:310000
OR2T5   310000 perm   92 sec   (3383 perm/sec)   p_kst 9.419355e-04   p_cons 7.075484e-01   p_joint 5.483871e-04

Joint ci ratio: 2.970932e-01	ci left: 4.630813e-04	ci right 6.274335e-04	k: 173	n:320000
Cons ci ratio: 4.452882e-03	ci left: 7.061771e-01	ci right 7.093317e-01	k: 226482	n:320000
KS ci ratio: 2.262148e-01	ci left: 8.314975e-04	ci right 1.046456e-03	k: 299	n:320000
OR2T5   320000 perm   96 sec   (3338 perm/sec)   p_kst 9.343750e-04   p_cons 7.077562e-01   p_joint 5.406250e-04

Joint ci ratio: 2.896939e-01	ci left: 4.743150e-04	ci right 6.376937e-04	k: 182	n:330000
Cons ci ratio: 4.386294e-03	ci left: 7.060690e-01	ci right 7.091758e-01	k: 233516	n:330000
KS ci ratio: 2.221777e-01	ci left: 8.377624e-04	ci right 1.049947e-03	k: 310	n:330000
OR2T5   330000 perm   100 sec   (3295 perm/sec)   p_kst 9.393939e-04   p_cons 7.076242e-01   p_joint 5.515152e-04

Joint ci ratio: 2.843068e-01	ci left: 4.794713e-04	ci right 6.410038e-04	k: 189	n:340000
Cons ci ratio: 4.319228e-03	ci left: 7.062917e-01	ci right 7.093518e-01	k: 240660	n:340000
KS ci ratio: 2.190312e-01	ci left: 8.381304e-04	ci right 1.046997e-03	k: 319	n:340000
OR2T5   340000 perm   105 sec   (3253 perm/sec)   p_kst 9.382353e-04   p_cons 7.078235e-01   p_joint 5.558824e-04

Joint ci ratio: 2.785031e-01	ci left: 4.870168e-04	ci right 6.471548e-04	k: 197	n:350000
Cons ci ratio: 4.255144e-03	ci left: 7.065020e-01	ci right 7.095174e-01	k: 247804	n:350000
KS ci ratio: 2.150356e-01	ci left: 8.466064e-04	ci right 1.053228e-03	k: 331	n:350000
OR2T5   350000 perm   109 sec   (3213 perm/sec)   p_kst 9.457143e-04   p_cons 7.080114e-01   p_joint 5.628571e-04

Joint ci ratio: 2.730408e-01	ci left: 4.941746e-04	ci right 6.529328e-04	k: 205	n:360000
Cons ci ratio: 4.195603e-03	ci left: 7.065256e-01	ci right 7.094988e-01	k: 254885	n:360000
KS ci ratio: 2.112509e-01	ci left: 8.546441e-04	ci right 1.059081e-03	k: 343	n:360000
OR2T5   360000 perm   113 sec   (3172 perm/sec)   p_kst 9.527778e-04   p_cons 7.080139e-01   p_joint 5.694444e-04

Joint ci ratio: 2.723822e-01	ci left: 4.833361e-04	ci right 6.381736e-04	k: 206	n:370000
Cons ci ratio: 4.139982e-03	ci left: 7.063993e-01	ci right 7.093325e-01	k: 261911	n:370000
KS ci ratio: 2.100349e-01	ci left: 8.417855e-04	ci right 1.041839e-03	k: 347	n:370000
OR2T5   370000 perm   118 sec   (3134 perm/sec)   p_kst 9.378378e-04   p_cons 7.078676e-01   p_joint 5.567568e-04

Joint ci ratio: 2.672658e-01	ci left: 4.902456e-04	ci right 6.438525e-04	k: 214	n:380000
Cons ci ratio: 4.085761e-03	ci left: 7.063564e-01	ci right 7.092509e-01	k: 268966	n:380000
KS ci ratio: 2.067917e-01	ci left: 8.470702e-04	ci right 1.044878e-03	k: 358	n:380000
OR2T5   380000 perm   123 sec   (3096 perm/sec)   p_kst 9.421053e-04   p_cons 7.078053e-01   p_joint 5.631579e-04

Joint ci ratio: 2.642115e-01	ci left: 4.896417e-04	ci right 6.410161e-04	k: 219	n:390000
Cons ci ratio: 4.033816e-03	ci left: 7.062954e-01	ci right 7.091528e-01	k: 276013	n:390000
KS ci ratio: 2.048053e-01	ci left: 8.423740e-04	ci right 1.036959e-03	k: 365	n:390000
OR2T5   390000 perm   127 sec   (3059 perm/sec)   p_kst 9.358974e-04   p_cons 7.077256e-01   p_joint 5.615385e-04

Joint ci ratio: 2.606805e-01	ci left: 4.914140e-04	ci right 6.409752e-04	k: 225	n:400000
Cons ci ratio: 3.981275e-03	ci left: 7.065006e-01	ci right 7.093214e-01	k: 283165	n:400000
KS ci ratio: 2.031477e-01	ci left: 8.355482e-04	ci right 1.026800e-03	k: 371	n:400000
OR2T5   400000 perm   132 sec   (3024 perm/sec)   p_kst 9.275000e-04   p_cons 7.079125e-01   p_joint 5.625000e-04

Joint ci ratio: 2.601072e-01	ci left: 4.817078e-04	ci right 6.279400e-04	k: 226	n:410000
Cons ci ratio: 3.931615e-03	ci left: 7.066031e-01	ci right 7.093891e-01	k: 290279	n:410000
KS ci ratio: 1.999477e-01	ci left: 8.429606e-04	ci right 1.032499e-03	k: 383	n:410000
OR2T5   410000 perm   137 sec   (2990 perm/sec)   p_kst 9.341463e-04   p_cons 7.079976e-01   p_joint 5.512195e-04

Joint ci ratio: 2.572892e-01	ci left: 4.813714e-04	ci right 6.256641e-04	k: 231	n:420000
Cons ci ratio: 3.886675e-03	ci left: 7.063910e-01	ci right 7.091442e-01	k: 297263	n:420000
KS ci ratio: 1.971436e-01	ci left: 8.477789e-04	ci right 1.035406e-03	k: 394	n:420000
OR2T5   420000 perm   142 sec   (2955 perm/sec)   p_kst 9.380952e-04   p_cons 7.077690e-01   p_joint 5.500000e-04

Joint ci ratio: 2.529640e-01	ci left: 4.875921e-04	ci right 6.309052e-04	k: 239	n:430000
Cons ci ratio: 3.840561e-03	ci left: 7.064777e-01	ci right 7.091985e-01	k: 304371	n:430000
KS ci ratio: 1.944542e-01	ci left: 8.523907e-04	ci right 1.038161e-03	k: 405	n:430000
OR2T5   430000 perm   147 sec   (2921 perm/sec)   p_kst 9.418605e-04   p_cons 7.078395e-01   p_joint 5.558140e-04

Joint ci ratio: 2.508824e-01	ci left: 4.850273e-04	ci right 6.262302e-04	k: 243	n:440000
Cons ci ratio: 3.794214e-03	ci left: 7.067610e-01	ci right 7.094499e-01	k: 311567	n:440000
KS ci ratio: 1.927998e-01	ci left: 8.481559e-04	ci right 1.031246e-03	k: 412	n:440000
OR2T5   440000 perm   152 sec   (2888 perm/sec)   p_kst 9.363636e-04   p_cons 7.081068e-01   p_joint 5.522727e-04

Joint ci ratio: 2.483509e-01	ci left: 4.846650e-04	ci right 6.241188e-04	k: 248	n:450000
Cons ci ratio: 3.751700e-03	ci left: 7.067892e-01	ci right 7.094481e-01	k: 318654	n:450000
KS ci ratio: 1.902821e-01	ci left: 8.525804e-04	ci right 1.033944e-03	k: 423	n:450000
OR2T5   450000 perm   158 sec   (2857 perm/sec)   p_kst 9.400000e-04   p_cons 7.081200e-01   p_joint 5.511111e-04

Joint ci ratio: 2.449316e-01	ci left: 4.884059e-04	ci right 6.267068e-04	k: 255	n:460000
Cons ci ratio: 3.711832e-03	ci left: 7.066771e-01	ci right 7.093072e-01	k: 325677	n:460000
KS ci ratio: 1.878605e-01	ci left: 8.568275e-04	ci right 1.036511e-03	k: 434	n:460000
OR2T5   460000 perm   163 sec   (2826 perm/sec)   p_kst 9.434783e-04   p_cons 7.079935e-01   p_joint 5.543478e-04

Joint ci ratio: 2.425743e-01	ci left: 4.880028e-04	ci right 6.246595e-04	k: 260	n:470000
Cons ci ratio: 3.674323e-03	ci left: 7.064442e-01	ci right 7.090468e-01	k: 332641	n:470000
KS ci ratio: 1.863675e-01	ci left: 8.527929e-04	ci right 1.030048e-03	k: 441	n:470000
OR2T5   470000 perm   168 sec   (2795 perm/sec)   p_kst 9.382979e-04   p_cons 7.077468e-01   p_joint 5.531915e-04

Joint ci ratio: 2.416511e-01	ci left: 4.817498e-04	ci right 6.160650e-04	k: 262	n:480000
Cons ci ratio: 3.636314e-03	ci left: 7.064048e-01	ci right 7.089802e-01	k: 339693	n:480000
KS ci ratio: 1.849095e-01	ci left: 8.489318e-04	ci right 1.023849e-03	k: 448	n:480000
OR2T5   480000 perm   174 sec   (2765 perm/sec)   p_kst 9.333333e-04   p_cons 7.076938e-01   p_joint 5.458333e-04

Joint ci ratio: 2.384976e-01	ci left: 4.853447e-04	ci right 6.186355e-04	k: 269	n:490000
Cons ci ratio: 3.598093e-03	ci left: 7.065244e-01	ci right 7.090731e-01	k: 346822	n:490000
KS ci ratio: 1.830838e-01	ci left: 8.491281e-04	ci right 1.022167e-03	k: 457	n:490000
OR2T5   490000 perm   179 sec   (2735 perm/sec)   p_kst 9.326531e-04   p_cons 7.078000e-01   p_joint 5.489796e-04

Joint ci ratio: 2.358909e-01	ci left: 4.869248e-04	ci right 6.189745e-04	k: 275	n:500000
Cons ci ratio: 3.561431e-03	ci left: 7.065953e-01	ci right 7.091183e-01	k: 353929	n:500000
KS ci ratio: 1.807309e-01	ci left: 8.550530e-04	ci right 1.026815e-03	k: 469	n:500000
OR2T5   500000 perm   185 sec   (2708 perm/sec)   p_kst 9.380000e-04   p_cons 7.078580e-01   p_joint 5.500000e-04

Joint ci ratio: 2.317292e-01	ci left: 4.958369e-04	ci right 6.275916e-04	k: 285	n:510000
Cons ci ratio: 3.527639e-03	ci left: 7.064555e-01	ci right 7.089539e-01	k: 360930	n:510000
KS ci ratio: 1.782815e-01	ci left: 8.626324e-04	ci right 1.033315e-03	k: 482	n:510000
OR2T5   510000 perm   190 sec   (2681 perm/sec)   p_kst 9.450980e-04   p_cons 7.077059e-01   p_joint 5.588235e-04

Joint ci ratio: 2.297299e-01	ci left: 4.953612e-04	ci right 6.256928e-04	k: 290	n:520000
Cons ci ratio: 3.494823e-03	ci left: 7.063173e-01	ci right 7.087919e-01	k: 367929	n:520000
KS ci ratio: 1.766435e-01	ci left: 8.625822e-04	ci right 1.031519e-03	k: 491	n:520000
OR2T5   520000 perm   196 sec   (2656 perm/sec)   p_kst 9.442308e-04   p_cons 7.075558e-01   p_joint 5.576923e-04

Joint ci ratio: 2.266353e-01	ci left: 5.002465e-04	ci right 6.298427e-04	k: 298	n:530000
Cons ci ratio: 3.461941e-03	ci left: 7.062997e-01	ci right 7.087509e-01	k: 374989	n:530000
KS ci ratio: 1.745275e-01	ci left: 8.679538e-04	ci right 1.035692e-03	k: 503	n:530000
OR2T5   530000 perm   202 sec   (2630 perm/sec)   p_kst 9.490566e-04   p_cons 7.075264e-01   p_joint 5.622642e-04

Joint ci ratio: 2.255074e-01	ci left: 4.962235e-04	ci right 6.240488e-04	k: 301	n:540000
Cons ci ratio: 3.429971e-03	ci left: 7.062828e-01	ci right 7.087113e-01	k: 382049	n:540000
KS ci ratio: 1.734984e-01	ci left: 8.625075e-04	ci right 1.028107e-03	k: 509	n:540000
OR2T5   540000 perm   207 sec   (2603 perm/sec)   p_kst 9.425926e-04   p_cons 7.074981e-01   p_joint 5.574074e-04

Joint ci ratio: 2.233000e-01	ci left: 4.974972e-04	ci right 6.242237e-04	k: 307	n:550000
Cons ci ratio: 3.400289e-03	ci left: 7.060937e-01	ci right 7.085005e-01	k: 389014	n:550000
KS ci ratio: 1.719875e-01	ci left: 8.624817e-04	ci right 1.026485e-03	k: 518	n:550000
OR2T5   550000 perm   213 sec   (2578 perm/sec)   p_kst 9.418182e-04   p_cons 7.072982e-01   p_joint 5.581818e-04

Joint ci ratio: 2.208047e-01	ci left: 5.004182e-04	ci right 6.262708e-04	k: 314	n:560000
Cons ci ratio: 3.370068e-03	ci left: 7.060706e-01	ci right 7.084558e-01	k: 396068	n:560000
KS ci ratio: 1.698727e-01	ci left: 8.693017e-04	ci right 1.032361e-03	k: 531	n:560000
OR2T5   560000 perm   219 sec   (2552 perm/sec)   p_kst 9.482143e-04   p_cons 7.072643e-01   p_joint 5.607143e-04

Joint ci ratio: 2.201077e-01	ci left: 4.949538e-04	ci right 6.189861e-04	k: 316	n:570000
Cons ci ratio: 3.340554e-03	ci left: 7.060589e-01	ci right 7.084232e-01	k: 403128	n:570000
KS ci ratio: 1.690806e-01	ci left: 8.624504e-04	ci right 1.023393e-03	k: 536	n:570000
OR2T5   570000 perm   226 sec   (2527 perm/sec)   p_kst 9.403509e-04   p_cons 7.072421e-01   p_joint 5.543860e-04

Joint ci ratio: 2.180537e-01	ci left: 4.961974e-04	ci right 6.192254e-04	k: 322	n:580000
Cons ci ratio: 3.312575e-03	ci left: 7.059511e-01	ci right 7.082951e-01	k: 410132	n:580000
KS ci ratio: 1.675279e-01	ci left: 8.640958e-04	ci right 1.023715e-03	k: 546	n:580000
OR2T5   580000 perm   232 sec   (2502 perm/sec)   p_kst 9.413793e-04   p_cons 7.071241e-01   p_joint 5.551724e-04

Joint ci ratio: 2.160561e-01	ci left: 4.974039e-04	ci right 6.194515e-04	k: 328	n:590000
Cons ci ratio: 3.285541e-03	ci left: 7.058147e-01	ci right 7.081392e-01	k: 417117	n:590000
KS ci ratio: 1.663163e-01	ci left: 8.624429e-04	ci right 1.020490e-03	k: 554	n:590000
OR2T5   590000 perm   238 sec   (2478 perm/sec)   p_kst 9.389831e-04   p_cons 7.069780e-01   p_joint 5.559322e-04

Joint ci ratio: 2.131596e-01	ci left: 5.033079e-04	ci right 6.249321e-04	k: 337	n:600000
Cons ci ratio: 3.257205e-03	ci left: 7.059316e-01	ci right 7.082364e-01	k: 424251	n:600000
KS ci ratio: 1.648378e-01	ci left: 8.640450e-04	ci right 1.020838e-03	k: 564	n:600000
OR2T5   600000 perm   244 sec   (2454 perm/sec)   p_kst 9.400000e-04   p_cons 7.070850e-01   p_joint 5.616667e-04

Joint ci ratio: 2.112925e-01	ci left: 5.043703e-04	ci right 6.250453e-04	k: 343	n:610000
Cons ci ratio: 3.230292e-03	ci left: 7.059545e-01	ci right 7.082402e-01	k: 431330	n:610000
KS ci ratio: 1.638264e-01	ci left: 8.608836e-04	ci right 1.016050e-03	k: 571	n:610000
OR2T5   610000 perm   251 sec   (2431 perm/sec)   p_kst 9.360656e-04   p_cons 7.070984e-01   p_joint 5.622951e-04

Joint ci ratio: 2.103776e-01	ci left: 5.008184e-04	ci right 6.200579e-04	k: 346	n:620000
Cons ci ratio: 3.204747e-03	ci left: 7.058847e-01	ci right 7.081521e-01	k: 438352	n:620000
KS ci ratio: 1.629744e-01	ci left: 8.562799e-04	ci right 1.009735e-03	k: 577	n:620000
OR2T5   620000 perm   258 sec   (2408 perm/sec)   p_kst 9.306452e-04   p_cons 7.070194e-01   p_joint 5.580645e-04

Joint ci ratio: 1.617202e-01	ci left: 8.563935e-04	ci right 1.008573e-03	k: 586	n:630000
Cons ci ratio: 3.179444e-03	ci left: 7.058632e-01	ci right 7.081126e-01	k: 445403	n:630000
KS ci ratio: 1.617202e-01	ci left: 8.563935e-04	ci right 1.008573e-03	k: 586	n:630000
OR2T5   630000 perm   264 sec   (2386 perm/sec)   p_kst 9.301587e-04   p_cons 7.069889e-01   p_joint 9.301587e-04

Joint ci ratio: 2.082879e-01	ci left: 4.955318e-04	ci right 6.121913e-04	k: 353	n:640000
Cons ci ratio: 3.153780e-03	ci left: 7.059677e-01	ci right 7.081992e-01	k: 452534	n:640000
KS ci ratio: 1.607648e-01	ci left: 8.535084e-04	ci right 1.004193e-03	k: 593	n:640000
OR2T5   640000 perm   271 sec   (2364 perm/sec)   p_kst 9.265625e-04   p_cons 7.070844e-01   p_joint 5.515625e-04

Joint ci ratio: 2.068324e-01	ci left: 4.952007e-04	ci right 6.108646e-04	k: 358	n:650000
Cons ci ratio: 3.129471e-03	ci left: 7.059704e-01	ci right 7.081847e-01	k: 459601	n:650000
KS ci ratio: 1.591647e-01	ci left: 8.581002e-04	ci right 1.007944e-03	k: 605	n:650000
OR2T5   650000 perm   278 sec   (2341 perm/sec)   p_kst 9.307692e-04   p_cons 7.070785e-01   p_joint 5.507692e-04

Joint ci ratio: 2.051253e-01	ci left: 4.963198e-04	ci right 6.111682e-04	k: 364	n:660000
Cons ci ratio: 3.106658e-03	ci left: 7.058472e-01	ci right 7.080449e-01	k: 466585	n:660000
KS ci ratio: 1.576116e-01	ci left: 8.625600e-04	ci right 1.011573e-03	k: 617	n:660000
OR2T5   660000 perm   285 sec   (2319 perm/sec)   p_kst 9.348485e-04   p_cons 7.069470e-01   p_joint 5.515152e-04

Joint ci ratio: 2.037347e-01	ci left: 4.959927e-04	ci right 6.098905e-04	k: 369	n:670000
Cons ci ratio: 3.082992e-03	ci left: 7.059085e-01	ci right 7.080897e-01	k: 473690	n:670000
KS ci ratio: 1.563516e-01	ci left: 8.640251e-04	ci right 1.011986e-03	k: 627	n:670000
OR2T5   670000 perm   292 sec   (2298 perm/sec)   p_kst 9.358209e-04   p_cons 7.070000e-01   p_joint 5.507463e-04

Joint ci ratio: 2.026425e-01	ci left: 4.942817e-04	ci right 6.071028e-04	k: 373	n:680000
Cons ci ratio: 3.060500e-03	ci left: 7.058813e-01	ci right 7.080464e-01	k: 480736	n:680000
KS ci ratio: 1.553653e-01	ci left: 8.626247e-04	ci right 1.009328e-03	k: 635	n:680000
OR2T5   680000 perm   299 sec   (2277 perm/sec)   p_kst 9.338235e-04   p_cons 7.069647e-01   p_joint 5.485294e-04

Joint ci ratio: 2.018350e-01	ci left: 4.912458e-04	ci right 6.028720e-04	k: 376	n:690000
Cons ci ratio: 3.038907e-03	ci left: 7.057983e-01	ci right 7.079478e-01	k: 487743	n:690000
KS ci ratio: 1.547586e-01	ci left: 8.570879e-04	ci right 1.002227e-03	k: 640	n:690000
OR2T5   690000 perm   306 sec   (2255 perm/sec)   p_kst 9.275362e-04   p_cons 7.068739e-01   p_joint 5.449275e-04

Joint ci ratio: 2.007729e-01	ci left: 4.896542e-04	ci right 6.002615e-04	k: 380	n:700000
Cons ci ratio: 3.016049e-03	ci left: 7.059537e-01	ci right 7.080875e-01	k: 494915	n:700000
KS ci ratio: 1.540398e-01	ci left: 8.530839e-04	ci right 9.968121e-04	k: 646	n:700000
OR2T5   700000 perm   313 sec   (2236 perm/sec)   p_kst 9.228571e-04   p_cons 7.070214e-01   p_joint 5.428571e-04

Joint ci ratio: 1.986973e-01	ci left: 4.934619e-04	ci right 6.036374e-04	k: 388	n:710000
Cons ci ratio: 2.994817e-03	ci left: 7.059496e-01	ci right 7.080684e-01	k: 501977	n:710000
KS ci ratio: 1.528629e-01	ci left: 8.546124e-04	ci right 9.973974e-04	k: 656	n:710000
OR2T5   710000 perm   320 sec   (2217 perm/sec)   p_kst 9.239437e-04   p_cons 7.070099e-01   p_joint 5.464789e-04

Joint ci ratio: 1.984430e-01	ci left: 4.879279e-04	ci right 5.967116e-04	k: 389	n:720000
Cons ci ratio: 2.973599e-03	ci left: 7.060056e-01	ci right 7.081094e-01	k: 509082	n:720000
KS ci ratio: 1.524002e-01	ci left: 8.480859e-04	ci right 9.893125e-04	k: 660	n:720000
OR2T5   720000 perm   328 sec   (2198 perm/sec)   p_kst 9.166667e-04   p_cons 7.070583e-01   p_joint 5.402778e-04

Joint ci ratio: 1.979366e-01	ci left: 4.838477e-04	ci right 5.914131e-04	k: 391	n:730000
Cons ci ratio: 2.953764e-03	ci left: 7.059284e-01	ci right 7.080179e-01	k: 516091	n:730000
KS ci ratio: 1.519417e-01	ci left: 8.417389e-04	ci right 9.814485e-04	k: 664	n:730000
OR2T5   730000 perm   335 sec   (2180 perm/sec)   p_kst 9.095890e-04   p_cons 7.069740e-01   p_joint 5.356164e-04

Joint ci ratio: 1.959469e-01	ci left: 4.875870e-04	ci right 5.947641e-04	k: 399	n:740000
Cons ci ratio: 2.934338e-03	ci left: 7.058506e-01	ci right 7.079262e-01	k: 523098	n:740000
KS ci ratio: 1.504776e-01	ci left: 8.472672e-04	ci right 9.864172e-04	k: 677	n:740000
OR2T5   740000 perm   342 sec   (2162 perm/sec)   p_kst 9.148649e-04   p_cons 7.068892e-01   p_joint 5.391892e-04

Joint ci ratio: 1.944935e-01	ci left: 4.886949e-04	ci right 5.952244e-04	k: 405	n:750000
Cons ci ratio: 2.915113e-03	ci left: 7.058003e-01	ci right 7.078621e-01	k: 530124	n:750000
KS ci ratio: 1.494887e-01	ci left: 8.475199e-04	ci right 9.857149e-04	k: 686	n:750000
OR2T5   750000 perm   350 sec   (2144 perm/sec)   p_kst 9.146667e-04   p_cons 7.068320e-01   p_joint 5.400000e-04

Joint ci ratio: 1.940167e-01	ci left: 4.847682e-04	ci right 5.901520e-04	k: 407	n:760000
Cons ci ratio: 2.895993e-03	ci left: 7.057896e-01	ci right 7.078378e-01	k: 537179	n:760000
KS ci ratio: 1.487331e-01	ci left: 8.452352e-04	ci right 9.822990e-04	k: 693	n:760000
OR2T5   760000 perm   357 sec   (2127 perm/sec)   p_kst 9.118421e-04   p_cons 7.068145e-01   p_joint 5.355263e-04

Joint ci ratio: 1.933076e-01	ci left: 4.821796e-04	ci right 5.865726e-04	k: 410	n:770000
Cons ci ratio: 2.877371e-03	ci left: 7.057610e-01	ci right 7.077959e-01	k: 544220	n:770000
KS ci ratio: 1.474634e-01	ci left: 8.492651e-04	ci right 9.857032e-04	k: 705	n:770000
OR2T5   770000 perm   365 sec   (2110 perm/sec)   p_kst 9.155844e-04   p_cons 7.067792e-01   p_joint 5.324675e-04

Joint ci ratio: 1.909974e-01	ci left: 4.882018e-04	ci right 5.924887e-04	k: 420	n:780000
Cons ci ratio: 2.858388e-03	ci left: 7.058371e-01	ci right 7.078588e-01	k: 551342	n:780000
KS ci ratio: 1.460222e-01	ci left: 8.556671e-04	ci right 9.916730e-04	k: 719	n:780000
OR2T5   780000 perm   373 sec   (2093 perm/sec)   p_kst 9.217949e-04   p_cons 7.068487e-01   p_joint 5.384615e-04

Joint ci ratio: 1.900967e-01	ci left: 4.868437e-04	ci right 5.902935e-04	k: 424	n:790000
Cons ci ratio: 2.840226e-03	ci left: 7.058455e-01	ci right 7.078543e-01	k: 558412	n:790000
KS ci ratio: 1.450186e-01	ci left: 8.570332e-04	ci right 9.922389e-04	k: 729	n:790000
OR2T5   790000 perm   381 sec   (2076 perm/sec)   p_kst 9.227848e-04   p_cons 7.068506e-01   p_joint 5.367089e-04

Joint ci ratio: 1.894295e-01	ci left: 4.843300e-04	ci right 5.868428e-04	k: 427	n:800000
Cons ci ratio: 2.822040e-03	ci left: 7.059074e-01	ci right 7.079036e-01	k: 565525	n:800000
KS ci ratio: 1.445249e-01	ci left: 8.523438e-04	ci right 9.863124e-04	k: 734	n:800000
OR2T5   800000 perm   388 sec   (2059 perm/sec)   p_kst 9.175000e-04   p_cons 7.069062e-01   p_joint 5.337500e-04

Joint ci ratio: 1.881155e-01	ci left: 4.854080e-04	ci right 5.873549e-04	k: 433	n:810000
Cons ci ratio: 2.804809e-03	ci left: 7.058777e-01	ci right 7.078615e-01	k: 572565	n:810000
KS ci ratio: 1.432631e-01	ci left: 8.572927e-04	ci right 9.907623e-04	k: 747	n:810000
OR2T5   810000 perm   396 sec   (2043 perm/sec)   p_kst 9.222222e-04   p_cons 7.068704e-01   p_joint 5.345679e-04

Joint ci ratio: 1.868284e-01	ci left: 4.864621e-04	ci right 5.878521e-04	k: 439	n:820000
Cons ci ratio: 2.787266e-03	ci left: 7.059415e-01	ci right 7.079131e-01	k: 579681	n:820000
KS ci ratio: 1.423149e-01	ci left: 8.585974e-04	ci right 9.913103e-04	k: 757	n:820000
OR2T5   820000 perm   405 sec   (2027 perm/sec)   p_kst 9.231707e-04   p_cons 7.069280e-01   p_joint 5.353659e-04

Joint ci ratio: 1.853596e-01	ci left: 4.886420e-04	ci right 5.895956e-04	k: 446	n:830000
Cons ci ratio: 2.770555e-03	ci left: 7.059279e-01	ci right 7.078876e-01	k: 586734	n:830000
KS ci ratio: 1.412932e-01	ci left: 8.610358e-04	ci right 9.930896e-04	k: 768	n:830000
OR2T5   830000 perm   413 sec   (2011 perm/sec)   p_kst 9.253012e-04   p_cons 7.069084e-01   p_joint 5.373494e-04

Joint ci ratio: 1.841279e-01	ci left: 4.896374e-04	ci right 5.900494e-04	k: 452	n:840000
Cons ci ratio: 2.753818e-03	ci left: 7.059634e-01	ci right 7.079113e-01	k: 593828	n:840000
KS ci ratio: 1.402033e-01	ci left: 8.645681e-04	ci right 9.960554e-04	k: 780	n:840000
OR2T5   840000 perm   421 sec   (1996 perm/sec)   p_kst 9.285714e-04   p_cons 7.069381e-01   p_joint 5.380952e-04

Joint ci ratio: 1.829204e-01	ci left: 4.906115e-04	ci right 5.904904e-04	k: 458	n:850000
Cons ci ratio: 2.737659e-03	ci left: 7.059558e-01	ci right 7.078922e-01	k: 600886	n:850000
KS ci ratio: 1.392261e-01	ci left: 8.668856e-04	ci right 9.977303e-04	k: 791	n:850000
OR2T5   850000 perm   429 sec   (1981 perm/sec)   p_kst 9.305882e-04   p_cons 7.069247e-01   p_joint 5.388235e-04

Joint ci ratio: 1.817364e-01	ci left: 4.915651e-04	ci right 5.909190e-04	k: 464	n:860000
Cons ci ratio: 2.721965e-03	ci left: 7.059204e-01	ci right 7.078456e-01	k: 607920	n:860000
KS ci ratio: 1.386151e-01	ci left: 8.646621e-04	ci right 9.945511e-04	k: 798	n:860000
OR2T5   860000 perm   438 sec   (1966 perm/sec)   p_kst 9.279070e-04   p_cons 7.068837e-01   p_joint 5.395349e-04

Joint ci ratio: 1.805751e-01	ci left: 4.924988e-04	ci right 5.913358e-04	k: 470	n:870000
Cons ci ratio: 2.706343e-03	ci left: 7.059158e-01	ci right 7.078300e-01	k: 614980	n:870000
KS ci ratio: 1.379264e-01	ci left: 8.636008e-04	ci right 9.926328e-04	k: 806	n:870000
OR2T5   870000 perm   446 sec   (1951 perm/sec)   p_kst 9.264368e-04   p_cons 7.068736e-01   p_joint 5.402299e-04

Joint ci ratio: 1.801932e-01	ci left: 4.890722e-04	ci right 5.869914e-04	k: 472	n:880000
Cons ci ratio: 2.690138e-03	ci left: 7.060421e-01	ci right 7.079451e-01	k: 622155	n:880000
KS ci ratio: 1.373323e-01	ci left: 8.614677e-04	ci right 9.895813e-04	k: 813	n:880000
OR2T5   880000 perm   454 sec   (1937 perm/sec)   p_kst 9.238636e-04   p_cons 7.069943e-01   p_joint 5.363636e-04

Joint ci ratio: 1.798138e-01	ci left: 4.857229e-04	ci right 5.827444e-04	k: 474	n:890000
Cons ci ratio: 2.675141e-03	ci left: 7.060228e-01	ci right 7.079152e-01	k: 629203	n:890000
KS ci ratio: 1.370804e-01	ci left: 8.550432e-04	ci right 9.819491e-04	k: 816	n:890000
OR2T5   890000 perm   463 sec   (1922 perm/sec)   p_kst 9.168539e-04   p_cons 7.069697e-01   p_joint 5.325843e-04

Joint ci ratio: 1.786887e-01	ci left: 4.866935e-04	ci right 5.832349e-04	k: 480	n:900000
Cons ci ratio: 2.660350e-03	ci left: 7.060106e-01	ci right 7.078925e-01	k: 636257	n:900000
KS ci ratio: 1.361667e-01	ci left: 8.573472e-04	ci right 9.836782e-04	k: 827	n:900000
OR2T5   900000 perm   472 sec   (1908 perm/sec)   p_kst 9.188889e-04   p_cons 7.069522e-01   p_joint 5.333333e-04

Joint ci ratio: 1.781343e-01	ci left: 4.844947e-04	ci right 5.802696e-04	k: 483	n:910000
Cons ci ratio: 2.645941e-03	ci left: 7.059768e-01	ci right 7.078483e-01	k: 643291	n:910000
KS ci ratio: 1.356762e-01	ci left: 8.542949e-04	ci right 9.796861e-04	k: 833	n:910000
OR2T5   910000 perm   481 sec   (1893 perm/sec)   p_kst 9.153846e-04   p_cons 7.069132e-01   p_joint 5.307692e-04

Joint ci ratio: 1.772213e-01	ci left: 4.844215e-04	ci right 5.796386e-04	k: 488	n:920000
Cons ci ratio: 2.631247e-03	ci left: 7.060253e-01	ci right 7.078865e-01	k: 650400	n:920000
KS ci ratio: 1.348700e-01	ci left: 8.555109e-04	ci right 9.802745e-04	k: 843	n:920000
OR2T5   920000 perm   489 sec   (1880 perm/sec)   p_kst 9.163043e-04   p_cons 7.069565e-01   p_joint 5.304348e-04

Joint ci ratio: 1.766804e-01	ci left: 4.822956e-04	ci right 5.767745e-04	k: 491	n:930000
Cons ci ratio: 2.617433e-03	ci left: 7.059716e-01	ci right 7.078229e-01	k: 657415	n:930000
KS ci ratio: 1.341566e-01	ci left: 8.556636e-04	ci right 9.797368e-04	k: 852	n:930000
OR2T5   930000 perm   498 sec   (1866 perm/sec)   p_kst 9.161290e-04   p_cons 7.068978e-01   p_joint 5.279570e-04

Joint ci ratio: 1.757894e-01	ci left: 4.822493e-04	ci right 5.761921e-04	k: 496	n:940000
Cons ci ratio: 2.603820e-03	ci left: 7.059212e-01	ci right 7.077627e-01	k: 664432	n:940000
KS ci ratio: 1.333770e-01	ci left: 8.568431e-04	ci right 9.803081e-04	k: 862	n:940000
OR2T5   940000 perm   507 sec   (1853 perm/sec)   p_kst 9.170213e-04   p_cons 7.068426e-01   p_joint 5.276596e-04

Joint ci ratio: 1.749118e-01	ci left: 4.822051e-04	ci right 5.756209e-04	k: 501	n:950000
Cons ci ratio: 2.589491e-03	ci left: 7.060204e-01	ci right 7.078520e-01	k: 671590	n:950000
KS ci ratio: 1.327632e-01	ci left: 8.559644e-04	ci right 9.786904e-04	k: 870	n:950000
OR2T5   950000 perm   516 sec   (1840 perm/sec)   p_kst 9.157895e-04   p_cons 7.069368e-01   p_joint 5.273684e-04

Joint ci ratio: 1.743917e-01	ci left: 4.801705e-04	ci right 5.728864e-04	k: 504	n:960000
Cons ci ratio: 2.576146e-03	ci left: 7.059967e-01	ci right 7.078188e-01	k: 678632	n:960000
KS ci ratio: 1.321577e-01	ci left: 8.551053e-04	ci right 9.771050e-04	k: 878	n:960000
OR2T5   960000 perm   525 sec   (1827 perm/sec)   p_kst 9.145833e-04   p_cons 7.069083e-01   p_joint 5.250000e-04

Joint ci ratio: 1.740477e-01	ci left: 4.771922e-04	ci right 5.691321e-04	k: 506	n:970000
Cons ci ratio: 2.562954e-03	ci left: 7.059817e-01	ci right 7.077944e-01	k: 685682	n:970000
KS ci ratio: 1.314863e-01	ci left: 8.552621e-04	ci right 9.766159e-04	k: 887	n:970000
OR2T5   970000 perm   534 sec   (1815 perm/sec)   p_kst 9.144330e-04   p_cons 7.068887e-01   p_joint 5.216495e-04

Joint ci ratio: 1.730268e-01	ci left: 4.781794e-04	ci right 5.697127e-04	k: 512	n:980000
Cons ci ratio: 2.549780e-03	ci left: 7.059967e-01	ci right 7.078001e-01	k: 692761	n:980000
KS ci ratio: 1.307521e-01	ci left: 8.564044e-04	ci right 9.771890e-04	k: 897	n:980000
OR2T5   980000 perm   544 sec   (1802 perm/sec)   p_kst 9.153061e-04   p_cons 7.068990e-01   p_joint 5.224490e-04

Joint ci ratio: 1.721898e-01	ci left: 4.781816e-04	ci right 5.692265e-04	k: 517	n:990000
Cons ci ratio: 2.536901e-03	ci left: 7.059962e-01	ci right 7.077905e-01	k: 699825	n:990000
KS ci ratio: 1.300300e-01	ci left: 8.575254e-04	ci right 9.777487e-04	k: 907	n:990000
OR2T5   990000 perm   553 sec   (1789 perm/sec)   p_kst 9.161616e-04   p_cons 7.068939e-01   p_joint 5.222222e-04

Joint ci ratio: 1.716935e-01	ci left: 4.762707e-04	ci right 5.666633e-04	k: 520	n:1000000
Cons ci ratio: 2.524550e-03	ci left: 7.059407e-01	ci right 7.077261e-01	k: 706834	n:1000000
KS ci ratio: 1.294610e-01	ci left: 8.566904e-04	ci right 9.762308e-04	k: 915	n:1000000
OR2T5   1000000 perm   563 sec   (1777 perm/sec)   p_kst 9.150000e-04   p_cons 7.068340e-01   p_joint 5.200000e-04

Joint ci ratio: 1.708755e-01	ci left: 4.762934e-04	ci right 5.662153e-04	k: 525	n:1010000
Cons ci ratio: 2.511747e-03	ci left: 7.059904e-01	ci right 7.077668e-01	k: 713948	n:1010000
KS ci ratio: 1.288995e-01	ci left: 8.558732e-04	ci right 9.747418e-04	k: 923	n:1010000
OR2T5   1010000 perm   572 sec   (1764 perm/sec)   p_kst 9.138614e-04   p_cons 7.068792e-01   p_joint 5.198020e-04

Joint ci ratio: 1.702296e-01	ci left: 4.753780e-04	ci right 5.647530e-04	k: 529	n:1020000
Cons ci ratio: 2.499793e-03	ci left: 7.059302e-01	ci right 7.076980e-01	k: 720951	n:1020000
KS ci ratio: 1.282763e-01	ci left: 8.560219e-04	ci right 9.742927e-04	k: 932	n:1020000
OR2T5   1020000 perm   582 sec   (1752 perm/sec)   p_kst 9.137255e-04   p_cons 7.068147e-01   p_joint 5.186275e-04

Joint ci ratio: 1.688021e-01	ci left: 4.791299e-04	ci right 5.683781e-04	k: 538	n:1030000
Cons ci ratio: 2.487367e-03	ci left: 7.059781e-01	ci right 7.077372e-01	k: 728064	n:1030000
KS ci ratio: 1.274590e-01	ci left: 8.589890e-04	ci right 9.768564e-04	k: 944	n:1030000
OR2T5   1030000 perm   592 sec   (1740 perm/sec)   p_kst 9.165049e-04   p_cons 7.068583e-01   p_joint 5.223301e-04

Joint ci ratio: 1.680246e-01	ci left: 4.791280e-04	ci right 5.679230e-04	k: 543	n:1040000
Cons ci ratio: 2.475533e-03	ci left: 7.059568e-01	ci right 7.077075e-01	k: 735106	n:1040000
KS ci ratio: 1.267899e-01	ci left: 8.600391e-04	ci right 9.773845e-04	k: 954	n:1040000
OR2T5   1040000 perm   602 sec   (1728 perm/sec)   p_kst 9.173077e-04   p_cons 7.068327e-01   p_joint 5.221154e-04

Joint ci ratio: 1.671055e-01	ci left: 4.800395e-04	ci right 5.684679e-04	k: 549	n:1050000
Cons ci ratio: 2.463373e-03	ci left: 7.060188e-01	ci right 7.077610e-01	k: 742235	n:1050000
KS ci ratio: 1.261312e-01	ci left: 8.610708e-04	ci right 9.779010e-04	k: 964	n:1050000
OR2T5   1050000 perm   612 sec   (1717 perm/sec)   p_kst 9.180952e-04   p_cons 7.068905e-01   p_joint 5.228571e-04

Joint ci ratio: 1.669541e-01	ci left: 4.764147e-04	ci right 5.640879e-04	k: 550	n:1060000
Cons ci ratio: 2.451451e-03	ci left: 7.060693e-01	ci right 7.078032e-01	k: 749353	n:1060000
KS ci ratio: 1.258060e-01	ci left: 8.575157e-04	ci right 9.735412e-04	k: 969	n:1060000
OR2T5   1060000 perm   622 sec   (1705 perm/sec)   p_kst 9.141509e-04   p_cons 7.069368e-01   p_joint 5.188679e-04

Joint ci ratio: 1.659035e-01	ci left: 4.782319e-04	ci right 5.656303e-04	k: 557	n:1070000
Cons ci ratio: 2.439883e-03	ci left: 7.060880e-01	ci right 7.078137e-01	k: 756438	n:1070000
KS ci ratio: 1.250348e-01	ci left: 8.603647e-04	ci right 9.760092e-04	k: 981	n:1070000
OR2T5   1070000 perm   632 sec   (1692 perm/sec)   p_kst 9.168224e-04   p_cons 7.069514e-01   p_joint 5.205607e-04

Joint ci ratio: 1.647266e-01	ci left: 4.809048e-04	ci right 5.681065e-04	k: 565	n:1080000
Cons ci ratio: 2.428982e-03	ci left: 7.060201e-01	ci right 7.077380e-01	k: 763430	n:1080000
KS ci ratio: 1.240280e-01	ci left: 8.667519e-04	ci right 9.822479e-04	k: 997	n:1080000
OR2T5   1080000 perm   642 sec   (1682 perm/sec)   p_kst 9.231481e-04   p_cons 7.068796e-01   p_joint 5.231481e-04

Joint ci ratio: 1.635745e-01	ci left: 4.835308e-04	ci right 5.705351e-04	k: 573	n:1090000
Cons ci ratio: 2.417604e-03	ci left: 7.060601e-01	ci right 7.077700e-01	k: 770538	n:1090000
KS ci ratio: 1.233500e-01	ci left: 8.685796e-04	ci right 9.836403e-04	k: 1008	n:1090000
OR2T5   1090000 perm   652 sec   (1671 perm/sec)   p_kst 9.247706e-04   p_cons 7.069156e-01   p_joint 5.256881e-04

Joint ci ratio: 1.632905e-01	ci left: 4.808789e-04	ci right 5.672410e-04	k: 575	n:1100000
Cons ci ratio: 2.406765e-03	ci left: 7.060338e-01	ci right 7.077360e-01	k: 777574	n:1100000
KS ci ratio: 1.229851e-01	ci left: 8.659698e-04	ci right 9.803207e-04	k: 1014	n:1100000
OR2T5   1100000 perm   663 sec   (1660 perm/sec)   p_kst 9.218182e-04   p_cons 7.068855e-01   p_joint 5.227273e-04

Joint ci ratio: 1.628671e-01	ci left: 4.791390e-04	ci right 5.649437e-04	k: 578	n:1110000
Cons ci ratio: 2.396039e-03	ci left: 7.060135e-01	ci right 7.077080e-01	k: 784616	n:1110000
KS ci ratio: 1.224434e-01	ci left: 8.660275e-04	ci right 9.798458e-04	k: 1023	n:1110000
OR2T5   1110000 perm   673 sec   (1649 perm/sec)   p_kst 9.216216e-04   p_cons 7.068613e-01   p_joint 5.207207e-04

Joint ci ratio: 1.620296e-01	ci left: 4.800003e-04	ci right 5.654743e-04	k: 584	n:1120000
Cons ci ratio: 2.385070e-03	ci left: 7.060605e-01	ci right 7.077474e-01	k: 791733	n:1120000
KS ci ratio: 1.216733e-01	ci left: 8.695480e-04	ci right 9.830585e-04	k: 1036	n:1120000
OR2T5   1120000 perm   683 sec   (1639 perm/sec)   p_kst 9.250000e-04   p_cons 7.069045e-01   p_joint 5.214286e-04

Joint ci ratio: 1.609328e-01	ci left: 4.825462e-04	ci right 5.678355e-04	k: 592	n:1130000
Cons ci ratio: 2.374209e-03	ci left: 7.061138e-01	ci right 7.077931e-01	k: 798858	n:1130000
KS ci ratio: 1.210908e-01	ci left: 8.704338e-04	ci right 9.834769e-04	k: 1046	n:1130000
OR2T5   1130000 perm   694 sec   (1629 perm/sec)   p_kst 9.256637e-04   p_cons 7.069540e-01   p_joint 5.238938e-04

Joint ci ratio: 1.602586e-01	ci left: 4.825230e-04	ci right 5.674166e-04	k: 597	n:1140000
Cons ci ratio: 2.364066e-03	ci left: 7.060661e-01	ci right 7.077381e-01	k: 805869	n:1140000
KS ci ratio: 1.207455e-01	ci left: 8.679023e-04	ci right 9.802723e-04	k: 1052	n:1140000
OR2T5   1140000 perm   704 sec   (1619 perm/sec)   p_kst 9.228070e-04   p_cons 7.069026e-01   p_joint 5.236842e-04

Joint ci ratio: 1.593287e-01	ci left: 4.841707e-04	ci right 5.688126e-04	k: 604	n:1150000
Cons ci ratio: 2.354076e-03	ci left: 7.060149e-01	ci right 7.076797e-01	k: 812875	n:1150000
KS ci ratio: 1.201197e-01	ci left: 8.696324e-04	ci right 9.816014e-04	k: 1063	n:1150000
OR2T5   1150000 perm   715 sec   (1609 perm/sec)   p_kst 9.243478e-04   p_cons 7.068478e-01   p_joint 5.252174e-04

Joint ci ratio: 1.581564e-01	ci left: 4.874473e-04	ci right 5.719756e-04	k: 613	n:1160000
Cons ci ratio: 2.344066e-03	ci left: 7.059905e-01	ci right 7.076481e-01	k: 819911	n:1160000
KS ci ratio: 1.192815e-01	ci left: 8.746796e-04	ci right 9.864572e-04	k: 1078	n:1160000
OR2T5   1160000 perm   726 sec   (1598 perm/sec)   p_kst 9.293103e-04   p_cons 7.068198e-01   p_joint 5.284483e-04

Joint ci ratio: 1.576438e-01	ci left: 4.865648e-04	ci right 5.706407e-04	k: 617	n:1170000
Cons ci ratio: 2.333874e-03	ci left: 7.060212e-01	ci right 7.076718e-01	k: 827011	n:1170000
KS ci ratio: 1.187325e-01	ci left: 8.754963e-04	ci right 9.868272e-04	k: 1088	n:1170000
OR2T5   1170000 perm   736 sec   (1589 perm/sec)   p_kst 9.299145e-04   p_cons 7.068470e-01   p_joint 5.273504e-04

Joint ci ratio: 1.570100e-01	ci left: 4.865119e-04	ci right 5.702087e-04	k: 622	n:1180000
Cons ci ratio: 2.324032e-03	ci left: 7.060125e-01	ci right 7.076560e-01	k: 834065	n:1180000
KS ci ratio: 1.181911e-01	ci left: 8.763003e-04	ci right 9.871898e-04	k: 1098	n:1180000
OR2T5   1180000 perm   747 sec   (1579 perm/sec)   p_kst 9.305085e-04   p_cons 7.068347e-01   p_joint 5.271186e-04

Joint ci ratio: 1.561351e-01	ci left: 4.880754e-04	ci right 5.715297e-04	k: 629	n:1190000
Cons ci ratio: 2.313972e-03	ci left: 7.060653e-01	ci right 7.077018e-01	k: 841192	n:1190000
KS ci ratio: 1.174452e-01	ci left: 8.803545e-04	ci right 9.910052e-04	k: 1112	n:1190000
OR2T5   1190000 perm   758 sec   (1569 perm/sec)   p_kst 9.344538e-04   p_cons 7.068840e-01   p_joint 5.285714e-04

Joint ci ratio: 1.551530e-01	ci left: 4.904152e-04	ci right 5.736930e-04	k: 637	n:1200000
Cons ci ratio: 2.304286e-03	ci left: 7.060730e-01	ci right 7.077027e-01	k: 848266	n:1200000
KS ci ratio: 1.167132e-01	ci left: 8.843434e-04	ci right 9.947549e-04	k: 1126	n:1200000
OR2T5   1200000 perm   769 sec   (1560 perm/sec)   p_kst 9.383333e-04   p_cons 7.068883e-01   p_joint 5.308333e-04

Joint ci ratio: 1.537137e-01	ci left: 4.958964e-04	ci right 5.792519e-04	k: 649	n:1210000
Cons ci ratio: 2.294529e-03	ci left: 7.061153e-01	ci right 7.077382e-01	k: 855382	n:1210000
KS ci ratio: 1.159439e-01	ci left: 8.890709e-04	ci right 9.992909e-04	k: 1141	n:1210000
OR2T5   1210000 perm   780 sec   (1550 perm/sec)   p_kst 9.429752e-04   p_cons 7.069273e-01   p_joint 5.363636e-04

Joint ci ratio: 1.534780e-01	ci left: 4.934080e-04	ci right 5.762063e-04	k: 651	n:1220000
Cons ci ratio: 2.285283e-03	ci left: 7.060865e-01	ci right 7.077027e-01	k: 862412	n:1220000
KS ci ratio: 1.157416e-01	ci left: 8.849670e-04	ci right 9.944737e-04	k: 1145	n:1220000
OR2T5   1220000 perm   792 sec   (1541 perm/sec)   p_kst 9.385246e-04   p_cons 7.068951e-01   p_joint 5.336066e-04

Joint ci ratio: 1.526605e-01	ci left: 4.948697e-04	ci right 5.774305e-04	k: 658	n:1230000
Cons ci ratio: 2.275800e-03	ci left: 7.061215e-01	ci right 7.077311e-01	k: 869520	n:1230000
KS ci ratio: 1.151900e-01	ci left: 8.864570e-04	ci right 9.955898e-04	k: 1156	n:1230000
OR2T5   1230000 perm   803 sec   (1532 perm/sec)   p_kst 9.398374e-04   p_cons 7.069268e-01   p_joint 5.349593e-04

Joint ci ratio: 1.519703e-01	ci left: 4.955331e-04	ci right 5.777968e-04	k: 664	n:1240000
Cons ci ratio: 2.266284e-03	ci left: 7.061835e-01	ci right 7.077865e-01	k: 876662	n:1240000
KS ci ratio: 1.147446e-01	ci left: 8.863575e-04	ci right 9.950276e-04	k: 1165	n:1240000
OR2T5   1240000 perm   814 sec   (1523 perm/sec)   p_kst 9.395161e-04   p_cons 7.069855e-01   p_joint 5.354839e-04

Joint ci ratio: 1.512892e-01	ci left: 4.961867e-04	ci right 5.781563e-04	k: 670	n:1250000
Cons ci ratio: 2.257100e-03	ci left: 7.062052e-01	ci right 7.078018e-01	k: 883755	n:1250000
KS ci ratio: 1.141101e-01	ci left: 8.893690e-04	ci right 9.977648e-04	k: 1178	n:1250000
OR2T5   1250000 perm   826 sec   (1514 perm/sec)   p_kst 9.424000e-04   p_cons 7.070040e-01   p_joint 5.360000e-04

Joint ci ratio: 1.507287e-01	ci left: 4.960670e-04	ci right 5.776859e-04	k: 675	n:1260000
Cons ci ratio: 2.248065e-03	ci left: 7.062195e-01	ci right 7.078097e-01	k: 890839	n:1260000
KS ci ratio: 1.135814e-01	ci left: 8.907921e-04	ci right 9.988246e-04	k: 1189	n:1260000
OR2T5   1260000 perm   837 sec   (1505 perm/sec)   p_kst 9.436508e-04   p_cons 7.070151e-01   p_joint 5.357143e-04

Joint ci ratio: 1.498445e-01	ci left: 4.982234e-04	ci right 5.796730e-04	k: 683	n:1270000
Cons ci ratio: 2.239240e-03	ci left: 7.062147e-01	ci right 7.077986e-01	k: 897899	n:1270000
KS ci ratio: 1.130600e-01	ci left: 8.921940e-04	ci right 9.998666e-04	k: 1200	n:1270000
OR2T5   1270000 perm   849 sec   (1497 perm/sec)   p_kst 9.448819e-04   p_cons 7.070071e-01   p_joint 5.377953e-04

Joint ci ratio: 1.496261e-01	ci left: 4.958349e-04	ci right 5.767654e-04	k: 685	n:1280000
Cons ci ratio: 2.230573e-03	ci left: 7.061997e-01	ci right 7.077775e-01	k: 904946	n:1280000
KS ci ratio: 1.126388e-01	ci left: 8.920565e-04	ci right 9.992848e-04	k: 1209	n:1280000
OR2T5   1280000 perm   860 sec   (1488 perm/sec)   p_kst 9.445312e-04   p_cons 7.069891e-01   p_joint 5.351563e-04

Joint ci ratio: 1.491919e-01	ci left: 4.949761e-04	ci right 5.755110e-04	k: 689	n:1290000
Cons ci ratio: 2.221831e-03	ci left: 7.062176e-01	ci right 7.077892e-01	k: 912035	n:1290000
KS ci ratio: 1.122222e-01	ci left: 8.919219e-04	ci right 9.987113e-04	k: 1218	n:1290000
OR2T5   1290000 perm   872 sec   (1479 perm/sec)   p_kst 9.441860e-04   p_cons 7.070039e-01   p_joint 5.341085e-04

Joint ci ratio: 1.484407e-01	ci left: 4.963527e-04	ci right 5.766689e-04	k: 696	n:1300000
Cons ci ratio: 2.213043e-03	ci left: 7.062630e-01	ci right 7.078284e-01	k: 919160	n:1300000
KS ci ratio: 1.118558e-01	ci left: 8.910423e-04	ci right 9.973551e-04	k: 1226	n:1300000
OR2T5   1300000 perm   884 sec   (1471 perm/sec)   p_kst 9.430769e-04   p_cons 7.070462e-01   p_joint 5.353846e-04

Joint ci ratio: 1.481224e-01	ci left: 4.947688e-04	ci right 5.746419e-04	k: 699	n:1310000
Cons ci ratio: 2.204607e-03	ci left: 7.062610e-01	ci right 7.078205e-01	k: 926224	n:1310000
KS ci ratio: 1.114027e-01	ci left: 8.916609e-04	ci right 9.975884e-04	k: 1236	n:1310000
OR2T5   1310000 perm   896 sec   (1462 perm/sec)   p_kst 9.435115e-04   p_cons 7.070412e-01   p_joint 5.335878e-04

Joint ci ratio: 1.474916e-01	ci left: 4.953980e-04	ci right 5.750020e-04	k: 705	n:1320000
Cons ci ratio: 2.196242e-03	ci left: 7.062637e-01	ci right 7.078172e-01	k: 933294	n:1320000
KS ci ratio: 1.110443e-01	ci left: 8.907979e-04	ci right 9.962600e-04	k: 1244	n:1320000
OR2T5   1320000 perm   908 sec   (1454 perm/sec)   p_kst 9.424242e-04   p_cons 7.070409e-01   p_joint 5.340909e-04

Joint ci ratio: 1.468688e-01	ci left: 4.960183e-04	ci right 5.753559e-04	k: 711	n:1330000
Cons ci ratio: 2.188122e-03	ci left: 7.062377e-01	ci right 7.077855e-01	k: 940326	n:1330000
KS ci ratio: 1.105569e-01	ci left: 8.921417e-04	ci right 9.972691e-04	k: 1255	n:1330000
OR2T5   1330000 perm   920 sec   (1446 perm/sec)   p_kst 9.436090e-04   p_cons 7.070120e-01   p_joint 5.345865e-04

Joint ci ratio: 1.462538e-01	ci left: 4.966301e-04	ci right 5.757039e-04	k: 717	n:1340000
Cons ci ratio: 2.179778e-03	ci left: 7.062719e-01	ci right 7.078138e-01	k: 947438	n:1340000
KS ci ratio: 1.101194e-01	ci left: 8.927406e-04	ci right 9.974954e-04	k: 1265	n:1340000
OR2T5   1340000 perm   932 sec   (1438 perm/sec)   p_kst 9.440299e-04   p_cons 7.070433e-01   p_joint 5.350746e-04

Joint ci ratio: 1.458482e-01	ci left: 4.958060e-04	ci right 5.745106e-04	k: 721	n:1350000
Cons ci ratio: 2.171548e-03	ci left: 7.063019e-01	ci right 7.078380e-01	k: 954545	n:1350000
KS ci ratio: 1.097301e-01	ci left: 8.926111e-04	ci right 9.969564e-04	k: 1274	n:1350000
OR2T5   1350000 perm   944 sec   (1430 perm/sec)   p_kst 9.437037e-04   p_cons 7.070704e-01   p_joint 5.340741e-04

Joint ci ratio: 1.452459e-01	ci left: 4.964115e-04	ci right 5.748586e-04	k: 727	n:1360000
Cons ci ratio: 2.163514e-03	ci left: 7.063115e-01	ci right 7.078420e-01	k: 961625	n:1360000
KS ci ratio: 1.092597e-01	ci left: 8.939146e-04	ci right 9.979355e-04	k: 1285	n:1360000
OR2T5   1360000 perm   957 sec   (1421 perm/sec)   p_kst 9.448529e-04   p_cons 7.070772e-01   p_joint 5.345588e-04

Joint ci ratio: 1.449477e-01	ci left: 4.948983e-04	ci right 5.729318e-04	k: 730	n:1370000
Cons ci ratio: 2.155515e-03	ci left: 7.063313e-01	ci right 7.078561e-01	k: 968719	n:1370000
KS ci ratio: 1.090481e-01	ci left: 8.909396e-04	ci right 9.944006e-04	k: 1290	n:1370000
OR2T5   1370000 perm   969 sec   (1414 perm/sec)   p_kst 9.416058e-04   p_cons 7.070942e-01   p_joint 5.328467e-04

Joint ci ratio: 1.444545e-01	ci left: 4.948041e-04	ci right 5.725344e-04	k: 735	n:1380000
Cons ci ratio: 2.147676e-03	ci left: 7.063370e-01	ci right 7.078563e-01	k: 975794	n:1380000
KS ci ratio: 1.085447e-01	ci left: 8.929426e-04	ci right 9.961269e-04	k: 1302	n:1380000
OR2T5   1380000 perm   982 sec   (1405 perm/sec)   p_kst 9.434783e-04   p_cons 7.070971e-01   p_joint 5.326087e-04

Joint ci ratio: 1.438693e-01	ci left: 4.954053e-04	ci right 5.728875e-04	k: 741	n:1390000
Cons ci ratio: 2.139973e-03	ci left: 7.063326e-01	ci right 7.078464e-01	k: 982855	n:1390000
KS ci ratio: 1.080482e-01	ci left: 8.949178e-04	ci right 9.978273e-04	k: 1314	n:1390000
OR2T5   1390000 perm   994 sec   (1398 perm/sec)   p_kst 9.453237e-04   p_cons 7.070899e-01   p_joint 5.330935e-04

Joint ci ratio: 1.435794e-01	ci left: 4.939324e-04	ci right 5.710154e-04	k: 744	n:1400000
Cons ci ratio: 2.132041e-03	ci left: 7.063890e-01	ci right 7.078973e-01	k: 990001	n:1400000
KS ci ratio: 1.076397e-01	ci left: 8.954758e-04	ci right 9.980354e-04	k: 1324	n:1400000
OR2T5   1400000 perm   1007 sec   (1391 perm/sec)   p_kst 9.457143e-04   p_cons 7.071436e-01   p_joint 5.314286e-04

Joint ci ratio: 1.429095e-01	ci left: 4.952160e-04	ci right 5.721079e-04	k: 751	n:1410000
Cons ci ratio: 2.124130e-03	ci left: 7.064574e-01	ci right 7.079602e-01	k: 997165	n:1410000
KS ci ratio: 1.071956e-01	ci left: 8.967167e-04	ci right 9.989680e-04	k: 1335	n:1410000
OR2T5   1410000 perm   1019 sec   (1384 perm/sec)   p_kst 9.468085e-04   p_cons 7.072092e-01   p_joint 5.326241e-04

Joint ci ratio: 1.424368e-01	ci left: 4.951240e-04	ci right 5.717258e-04	k: 756	n:1420000
Cons ci ratio: 2.116814e-03	ci left: 7.064254e-01	ci right 7.079230e-01	k: 1004188	n:1420000
KS ci ratio: 1.068363e-01	ci left: 8.965702e-04	ci right 9.984407e-04	k: 1344	n:1420000
OR2T5   1420000 perm   1031 sec   (1377 perm/sec)   p_kst 9.464789e-04   p_cons 7.071746e-01   p_joint 5.323944e-04

Joint ci ratio: 1.422492e-01	ci left: 4.930103e-04	ci right 5.691761e-04	k: 758	n:1430000
Cons ci ratio: 2.109317e-03	ci left: 7.064443e-01	ci right 7.079367e-01	k: 1011283	n:1430000
KS ci ratio: 1.066780e-01	ci left: 8.930229e-04	ci right 9.943305e-04	k: 1348	n:1430000
OR2T5   1430000 perm   1043 sec   (1370 perm/sec)   p_kst 9.426573e-04   p_cons 7.071909e-01   p_joint 5.300699e-04

Joint ci ratio: 1.419690e-01	ci left: 4.915959e-04	ci right 5.673809e-04	k: 761	n:1440000
Cons ci ratio: 2.102304e-03	ci left: 7.063830e-01	ci right 7.078703e-01	k: 1018263	n:1440000
KS ci ratio: 1.064024e-01	ci left: 8.915529e-04	ci right 9.924161e-04	k: 1355	n:1440000
OR2T5   1440000 perm   1056 sec   (1364 perm/sec)   p_kst 9.409722e-04   p_cons 7.071271e-01   p_joint 5.284722e-04

Joint ci ratio: 1.415979e-01	ci left: 4.908663e-04	ci right 5.663243e-04	k: 765	n:1450000
Cons ci ratio: 2.095096e-03	ci left: 7.063751e-01	ci right 7.078572e-01	k: 1025319	n:1450000
KS ci ratio: 1.061289e-01	ci left: 8.901035e-04	ci right 9.905277e-04	k: 1362	n:1450000
OR2T5   1450000 perm   1069 sec   (1357 perm/sec)   p_kst 9.393103e-04   p_cons 7.071166e-01   p_joint 5.275862e-04

Joint ci ratio: 1.413215e-01	ci left: 4.894863e-04	ci right 5.645729e-04	k: 768	n:1460000
Cons ci ratio: 2.088140e-03	ci left: 7.063316e-01	ci right 7.078087e-01	k: 1032323	n:1460000
KS ci ratio: 1.059737e-01	ci left: 8.866739e-04	ci right 9.865558e-04	k: 1366	n:1460000
OR2T5   1460000 perm   1082 sec   (1350 perm/sec)   p_kst 9.356164e-04   p_cons 7.070705e-01   p_joint 5.260274e-04

Joint ci ratio: 1.406826e-01	ci left: 4.907504e-04	ci right 5.656620e-04	k: 775	n:1470000
Cons ci ratio: 2.080895e-03	ci left: 7.063602e-01	ci right 7.078322e-01	k: 1039432	n:1470000
KS ci ratio: 1.055115e-01	ci left: 8.885895e-04	ci right 9.882235e-04	k: 1378	n:1470000
OR2T5   1470000 perm   1095 sec   (1343 perm/sec)   p_kst 9.374150e-04   p_cons 7.070966e-01   p_joint 5.272109e-04

Joint ci ratio: 1.400523e-01	ci left: 4.919982e-04	ci right 5.667357e-04	k: 782	n:1480000
Cons ci ratio: 2.073927e-03	ci left: 7.063478e-01	ci right 7.078149e-01	k: 1046481	n:1480000
KS ci ratio: 1.050932e-01	ci left: 8.898222e-04	ci right 9.891744e-04	k: 1389	n:1480000
OR2T5   1480000 perm   1108 sec   (1336 perm/sec)   p_kst 9.385135e-04   p_cons 7.070818e-01   p_joint 5.283784e-04

Joint ci ratio: 1.395187e-01	ci left: 4.925822e-04	ci right 5.670997e-04	k: 788	n:1490000
Cons ci ratio: 2.066972e-03	ci left: 7.063470e-01	ci right 7.078092e-01	k: 1053547	n:1490000
KS ci ratio: 1.048296e-01	ci left: 8.884249e-04	ci right 9.873570e-04	k: 1396	n:1490000
OR2T5   1490000 perm   1121 sec   (1329 perm/sec)   p_kst 9.369128e-04   p_cons 7.070785e-01   p_joint 5.288591e-04

Joint ci ratio: 1.392543e-01	ci left: 4.912285e-04	ci right 5.653887e-04	k: 791	n:1500000
Cons ci ratio: 2.060216e-03	ci left: 7.063203e-01	ci right 7.077776e-01	k: 1060574	n:1500000
KS ci ratio: 1.044936e-01	ci left: 8.883450e-04	ci right 9.869316e-04	k: 1405	n:1500000
OR2T5   1500000 perm   1135 sec   (1322 perm/sec)   p_kst 9.366667e-04   p_cons 7.070493e-01   p_joint 5.273333e-04

Joint ci ratio: 1.389040e-01	ci left: 4.905322e-04	ci right 5.643856e-04	k: 795	n:1510000
Cons ci ratio: 2.053292e-03	ci left: 7.063409e-01	ci right 7.077934e-01	k: 1067672	n:1510000
KS ci ratio: 1.042715e-01	ci left: 8.863316e-04	ci right 9.844729e-04	k: 1411	n:1510000
OR2T5   1510000 perm   1148 sec   (1315 perm/sec)   p_kst 9.344371e-04   p_cons 7.070675e-01   p_joint 5.264901e-04

Joint ci ratio: 1.379539e-01	ci left: 4.942913e-04	ci right 5.681597e-04	k: 806	n:1520000
Cons ci ratio: 2.046539e-03	ci left: 7.063409e-01	ci right 7.077886e-01	k: 1074739	n:1520000
KS ci ratio: 1.036854e-01	ci left: 8.907532e-04	ci right 9.887959e-04	k: 1427	n:1520000
OR2T5   1520000 perm   1161 sec   (1309 perm/sec)   p_kst 9.388158e-04   p_cons 7.070651e-01   p_joint 5.302632e-04

Joint ci ratio: 1.375285e-01	ci left: 4.942160e-04	ci right 5.678268e-04	k: 811	n:1530000
Cons ci ratio: 2.039990e-03	ci left: 7.063128e-01	ci right 7.077557e-01	k: 1081763	n:1530000
KS ci ratio: 1.032883e-01	ci left: 8.919348e-04	ci right 9.897087e-04	k: 1438	n:1530000
OR2T5   1530000 perm   1175 sec   (1302 perm/sec)   p_kst 9.398693e-04   p_cons 7.070346e-01   p_joint 5.300654e-04

Joint ci ratio: 1.371910e-01	ci left: 4.935149e-04	ci right 5.668262e-04	k: 815	n:1540000
Cons ci ratio: 2.033242e-03	ci left: 7.063383e-01	ci right 7.077765e-01	k: 1088869	n:1540000
KS ci ratio: 1.030024e-01	ci left: 8.912038e-04	ci right 9.886109e-04	k: 1446	n:1540000
OR2T5   1540000 perm   1189 sec   (1295 perm/sec)   p_kst 9.389610e-04   p_cons 7.070578e-01   p_joint 5.292208e-04

Joint ci ratio: 1.369396e-01	ci left: 4.922000e-04	ci right 5.651711e-04	k: 818	n:1550000
Cons ci ratio: 2.026488e-03	ci left: 7.063783e-01	ci right 7.078119e-01	k: 1095998	n:1550000
KS ci ratio: 1.027543e-01	ci left: 8.898540e-04	ci right 9.868651e-04	k: 1453	n:1550000
OR2T5   1550000 perm   1203 sec   (1289 perm/sec)   p_kst 9.374194e-04   p_cons 7.070955e-01   p_joint 5.277419e-04

Joint ci ratio: 1.365236e-01	ci left: 4.921404e-04	ci right 5.648629e-04	k: 823	n:1560000
Cons ci ratio: 2.020017e-03	ci left: 7.063736e-01	ci right 7.078025e-01	k: 1103058	n:1560000
KS ci ratio: 1.024027e-01	ci left: 8.903956e-04	ci right 9.871136e-04	k: 1463	n:1560000
OR2T5   1560000 perm   1216 sec   (1283 perm/sec)   p_kst 9.378205e-04   p_cons 7.070885e-01   p_joint 5.275641e-04

Joint ci ratio: 1.357839e-01	ci left: 4.945430e-04	ci right 5.671927e-04	k: 832	n:1570000
Cons ci ratio: 2.013700e-03	ci left: 7.063498e-01	ci right 7.077742e-01	k: 1110088	n:1570000
KS ci ratio: 1.018819e-01	ci left: 8.940344e-04	ci right 9.906243e-04	k: 1478	n:1570000
OR2T5   1570000 perm   1229 sec   (1277 perm/sec)   p_kst 9.414013e-04   p_cons 7.070624e-01   p_joint 5.299363e-04

Joint ci ratio: 1.350561e-01	ci left: 4.969163e-04	ci right 5.694919e-04	k: 841	n:1580000
Cons ci ratio: 2.007059e-03	ci left: 7.064055e-01	ci right 7.078254e-01	k: 1117243	n:1580000
KS ci ratio: 1.014370e-01	ci left: 8.963947e-04	ci right 9.927914e-04	k: 1491	n:1580000
OR2T5   1580000 perm   1243 sec   (1271 perm/sec)   p_kst 9.436709e-04   p_cons 7.071158e-01   p_joint 5.322785e-04

Joint ci ratio: 1.345774e-01	ci left: 4.974373e-04	ci right 5.698109e-04	k: 847	n:1590000
Cons ci ratio: 2.000847e-03	ci left: 7.063850e-01	ci right 7.078004e-01	k: 1124278	n:1590000
KS ci ratio: 1.011662e-01	ci left: 8.956609e-04	ci right 9.917064e-04	k: 1499	n:1590000
OR2T5   1590000 perm   1257 sec   (1265 perm/sec)   p_kst 9.427673e-04   p_cons 7.070931e-01   p_joint 5.327044e-04

Joint ci ratio: 1.341824e-01	ci left: 4.973483e-04	ci right 5.694796e-04	k: 852	n:1600000
Cons ci ratio: 1.994660e-03	ci left: 7.063716e-01	ci right 7.077826e-01	k: 1131324	n:1600000
KS ci ratio: 1.007972e-01	ci left: 8.967645e-04	ci right 9.925568e-04	k: 1510	n:1600000
OR2T5   1600000 perm   1270 sec   (1260 perm/sec)   p_kst 9.437500e-04   p_cons 7.070775e-01   p_joint 5.325000e-04

Joint ci ratio: 1.338690e-01	ci left: 4.966603e-04	ci right 5.685102e-04	k: 856	n:1610000
Cons ci ratio: 1.988613e-03	ci left: 7.063410e-01	ci right 7.077477e-01	k: 1138342	n:1610000
KS ci ratio: 1.004323e-01	ci left: 8.978549e-04	ci right 9.933959e-04	k: 1521	n:1610000
OR2T5   1610000 perm   1284 sec   (1254 perm/sec)   p_kst 9.447205e-04   p_cons 7.070447e-01   p_joint 5.316770e-04

Joint ci ratio: 1.336354e-01	ci left: 4.953844e-04	ci right 5.669147e-04	k: 859	n:1620000
Cons ci ratio: 1.982470e-03	ci left: 7.063423e-01	ci right 7.077446e-01	k: 1145411	n:1620000
KS ci ratio: 1.001694e-01	ci left: 8.971270e-04	ci right 9.923260e-04	k: 1529	n:1620000
OR2T5   1620000 perm   1299 sec   (1248 perm/sec)   p_kst 9.438272e-04   p_cons 7.070438e-01   p_joint 5.302469e-04

Joint ci ratio: 1.333257e-01	ci left: 4.947172e-04	ci right 5.659726e-04	k: 863	n:1630000
Cons ci ratio: 1.976442e-03	ci left: 7.063313e-01	ci right 7.077293e-01	k: 1152460	n:1630000
KS ci ratio: 9.984362e-02	ci left: 8.976046e-04	ci right 9.925265e-04	k: 1539	n:1630000
OR2T5   1630000 perm   1313 sec   (1242 perm/sec)   p_kst 9.441718e-04   p_cons 7.070307e-01   p_joint 5.294479e-04

Joint ci ratio: 1.326365e-01	ci left: 4.970059e-04	ci right 5.681918e-04	k: 872	n:1640000
Cons ci ratio: 1.970428e-03	ci left: 7.063290e-01	ci right 7.077227e-01	k: 1159523	n:1640000
KS ci ratio: 9.939272e-02	ci left: 9.004554e-04	ci right 9.952236e-04	k: 1553	n:1640000
OR2T5   1640000 perm   1327 sec   (1236 perm/sec)   p_kst 9.469512e-04   p_cons 7.070262e-01   p_joint 5.317073e-04

Joint ci ratio: 1.321079e-01	ci left: 4.980957e-04	ci right 5.691310e-04	k: 879	n:1650000
Cons ci ratio: 1.964383e-03	ci left: 7.063449e-01	ci right 7.077344e-01	k: 1166616	n:1650000
KS ci ratio: 9.888477e-02	ci left: 9.044547e-04	ci right 9.991291e-04	k: 1569	n:1650000
OR2T5   1650000 perm   1342 sec   (1230 perm/sec)   p_kst 9.509091e-04   p_cons 7.070400e-01   p_joint 5.327273e-04

Joint ci ratio: 1.318834e-01	ci left: 4.968427e-04	ci right 5.675694e-04	k: 882	n:1660000
Cons ci ratio: 1.958527e-03	ci left: 7.063323e-01	ci right 7.077176e-01	k: 1173662	n:1660000
KS ci ratio: 9.869646e-02	ci left: 9.025313e-04	ci right 9.968141e-04	k: 1575	n:1660000
OR2T5   1660000 perm   1356 sec   (1224 perm/sec)   p_kst 9.487952e-04   p_cons 7.070253e-01   p_joint 5.313253e-04

Joint ci ratio: 1.317344e-01	ci left: 4.950257e-04	ci right 5.654079e-04	k: 884	n:1670000
Cons ci ratio: 1.952773e-03	ci left: 7.063090e-01	ci right 7.076902e-01	k: 1180690	n:1670000
KS ci ratio: 9.832277e-02	ci left: 9.041356e-04	ci right 9.982077e-04	k: 1587	n:1670000
OR2T5   1670000 perm   1370 sec   (1219 perm/sec)   p_kst 9.502994e-04   p_cons 7.070000e-01   p_joint 5.293413e-04

Joint ci ratio: 1.312164e-01	ci left: 4.961087e-04	ci right 5.663460e-04	k: 891	n:1680000
Cons ci ratio: 1.946816e-03	ci left: 7.063403e-01	ci right 7.077173e-01	k: 1187809	n:1680000
KS ci ratio: 9.789207e-02	ci left: 9.068828e-04	ci right 1.000804e-03	k: 1601	n:1680000
OR2T5   1680000 perm   1384 sec   (1214 perm/sec)   p_kst 9.529762e-04   p_cons 7.070292e-01   p_joint 5.303571e-04

Joint ci ratio: 1.310697e-01	ci left: 4.943178e-04	ci right 5.642171e-04	k: 893	n:1690000
Cons ci ratio: 1.940990e-03	ci left: 7.063546e-01	ci right 7.077275e-01	k: 1194900	n:1690000
KS ci ratio: 9.773979e-02	ci left: 9.044027e-04	ci right 9.979127e-04	k: 1606	n:1690000
OR2T5   1690000 perm   1399 sec   (1208 perm/sec)   p_kst 9.502959e-04   p_cons 7.070414e-01   p_joint 5.284024e-04

Joint ci ratio: 1.307047e-01	ci left: 4.942549e-04	ci right 5.639356e-04	k: 898	n:1700000
Cons ci ratio: 1.935579e-03	ci left: 7.062910e-01	ci right 7.076600e-01	k: 1201859	n:1700000
KS ci ratio: 9.752768e-02	ci left: 9.030998e-04	ci right 9.962608e-04	k: 1613	n:1700000
OR2T5   1700000 perm   1413 sec   (1203 perm/sec)   p_kst 9.488235e-04   p_cons 7.069759e-01   p_joint 5.282353e-04

Joint ci ratio: 1.301269e-01	ci left: 4.958903e-04	ci right 5.654686e-04	k: 906	n:1710000
Cons ci ratio: 1.930057e-03	ci left: 7.062616e-01	ci right 7.076266e-01	k: 1208875	n:1710000
KS ci ratio: 9.722694e-02	ci left: 9.035241e-04	ci right 9.964251e-04	k: 1623	n:1710000
OR2T5   1710000 perm   1427 sec   (1198 perm/sec)   p_kst 9.491228e-04   p_cons 7.069444e-01   p_joint 5.298246e-04

Joint ci ratio: 1.301271e-01	ci left: 4.930071e-04	ci right 5.621810e-04	k: 906	n:1720000
Cons ci ratio: 1.924245e-03	ci left: 7.063052e-01	ci right 7.076662e-01	k: 1216016	n:1720000
KS ci ratio: 9.698839e-02	ci left: 9.028092e-04	ci right 9.953960e-04	k: 1631	n:1720000
OR2T5   1720000 perm   1442 sec   (1193 perm/sec)   p_kst 9.482558e-04   p_cons 7.069860e-01   p_joint 5.267442e-04

Joint ci ratio: 1.295569e-01	ci left: 4.946315e-04	ci right 5.637058e-04	k: 914	n:1730000
Cons ci ratio: 1.918676e-03	ci left: 7.063073e-01	ci right 7.076643e-01	k: 1223086	n:1730000
KS ci ratio: 9.663369e-02	ci left: 9.043592e-04	ci right 9.967465e-04	k: 1643	n:1730000
OR2T5   1730000 perm   1457 sec   (1187 perm/sec)   p_kst 9.497110e-04   p_cons 7.069861e-01   p_joint 5.283237e-04

Joint ci ratio: 1.290641e-01	ci left: 4.956816e-04	ci right 5.646191e-04	k: 921	n:1740000
Cons ci ratio: 1.913109e-03	ci left: 7.063191e-01	ci right 7.076722e-01	k: 1230173	n:1740000
KS ci ratio: 9.631198e-02	ci left: 9.053310e-04	ci right 9.974924e-04	k: 1654	n:1740000
OR2T5   1740000 perm   1472 sec   (1182 perm/sec)   p_kst 9.505747e-04   p_cons 7.069960e-01   p_joint 5.293103e-04

Joint ci ratio: 1.288547e-01	ci left: 4.945081e-04	ci right 5.631623e-04	k: 924	n:1750000
Cons ci ratio: 1.907853e-03	ci left: 7.062736e-01	ci right 7.076229e-01	k: 1237160	n:1750000
KS ci ratio: 9.616695e-02	ci left: 9.029460e-04	ci right 9.947184e-04	k: 1659	n:1750000
OR2T5   1750000 perm   1488 sec   (1176 perm/sec)   p_kst 9.480000e-04   p_cons 7.069486e-01   p_joint 5.280000e-04

Joint ci ratio: 1.285770e-01	ci left: 4.938980e-04	ci right 5.623084e-04	k: 928	n:1760000
Cons ci ratio: 1.902539e-03	ci left: 7.062508e-01	ci right 7.075963e-01	k: 1244186	n:1760000
KS ci ratio: 9.579249e-02	ci left: 9.050248e-04	ci right 9.966301e-04	k: 1672	n:1760000
OR2T5   1760000 perm   1503 sec   (1171 perm/sec)   p_kst 9.500000e-04   p_cons 7.069239e-01   p_joint 5.272727e-04

Joint ci ratio: 1.283700e-01	ci left: 4.927480e-04	ci right 5.608809e-04	k: 931	n:1770000
Cons ci ratio: 1.897103e-03	ci left: 7.062644e-01	ci right 7.076061e-01	k: 1251276	n:1770000
KS ci ratio: 9.564979e-02	ci left: 9.026688e-04	ci right 9.938920e-04	k: 1677	n:1770000
OR2T5   1770000 perm   1519 sec   (1166 perm/sec)   p_kst 9.474576e-04   p_cons 7.069356e-01   p_joint 5.259887e-04

Joint ci ratio: 1.278906e-01	ci left: 4.937863e-04	ci right 5.617884e-04	k: 938	n:1780000
Cons ci ratio: 1.891765e-03	ci left: 7.062667e-01	ci right 7.076046e-01	k: 1258346	n:1780000
KS ci ratio: 9.539432e-02	ci left: 9.025330e-04	ci right 9.934853e-04	k: 1686	n:1780000
OR2T5   1780000 perm   1534 sec   (1161 perm/sec)   p_kst 9.471910e-04   p_cons 7.069360e-01   p_joint 5.269663e-04

Joint ci ratio: 1.276869e-01	ci left: 4.926501e-04	ci right 5.603795e-04	k: 941	n:1790000
Cons ci ratio: 1.886568e-03	ci left: 7.062477e-01	ci right 7.075818e-01	k: 1265378	n:1790000
KS ci ratio: 9.522522e-02	ci left: 9.007630e-04	ci right 9.913669e-04	k: 1692	n:1790000
OR2T5   1790000 perm   1549 sec   (1155 perm/sec)   p_kst 9.452514e-04   p_cons 7.069151e-01   p_joint 5.256983e-04

Joint ci ratio: 1.272821e-01	ci left: 4.931402e-04	ci right 5.607059e-04	k: 947	n:1800000
Cons ci ratio: 1.881369e-03	ci left: 7.062389e-01	ci right 7.075694e-01	k: 1272428	n:1800000
KS ci ratio: 9.502903e-02	ci left: 8.995551e-04	ci right 9.898408e-04	k: 1699	n:1800000
OR2T5   1800000 perm   1564 sec   (1151 perm/sec)   p_kst 9.438889e-04   p_cons 7.069044e-01   p_joint 5.261111e-04

Joint ci ratio: 1.269478e-01	ci left: 4.930903e-04	ci right 5.604583e-04	k: 952	n:1810000
Cons ci ratio: 1.876022e-03	ci left: 7.062722e-01	ci right 7.075990e-01	k: 1279554	n:1810000
KS ci ratio: 9.475075e-02	ci left: 8.999789e-04	ci right 9.900279e-04	k: 1709	n:1810000
OR2T5   1810000 perm   1580 sec   (1146 perm/sec)   p_kst 9.441989e-04   p_cons 7.069359e-01   p_joint 5.259669e-04

Joint ci ratio: 1.266822e-01	ci left: 4.925090e-04	ci right 5.596463e-04	k: 956	n:1820000
Cons ci ratio: 1.870909e-03	ci left: 7.062634e-01	ci right 7.075865e-01	k: 1286604	n:1820000
KS ci ratio: 9.450240e-02	ci left: 8.998620e-04	ci right 9.896503e-04	k: 1718	n:1820000
OR2T5   1820000 perm   1596 sec   (1141 perm/sec)   p_kst 9.439560e-04   p_cons 7.069253e-01   p_joint 5.252747e-04

Joint ci ratio: 1.258302e-01	ci left: 4.966973e-04	ci right 5.639161e-04	k: 969	n:1830000
Cons ci ratio: 1.865702e-03	ci left: 7.062847e-01	ci right 7.076042e-01	k: 1293709	n:1830000
KS ci ratio: 9.406547e-02	ci left: 9.034818e-04	ci right 9.931915e-04	k: 1734	n:1830000
OR2T5   1830000 perm   1611 sec   (1136 perm/sec)   p_kst 9.475410e-04   p_cons 7.069448e-01   p_joint 5.295082e-04

Joint ci ratio: 1.257656e-01	ci left: 4.945242e-04	ci right 5.614120e-04	k: 970	n:1840000
Cons ci ratio: 1.860468e-03	ci left: 7.063216e-01	ci right 7.076375e-01	k: 1300843	n:1840000
KS ci ratio: 9.393034e-02	ci left: 9.012251e-04	ci right 9.905751e-04	k: 1739	n:1840000
OR2T5   1840000 perm   1627 sec   (1131 perm/sec)   p_kst 9.451087e-04   p_cons 7.069799e-01   p_joint 5.271739e-04

Joint ci ratio: 1.257010e-01	ci left: 4.923746e-04	ci right 5.589349e-04	k: 971	n:1850000
Cons ci ratio: 1.855478e-03	ci left: 7.063133e-01	ci right 7.076255e-01	k: 1307894	n:1850000
KS ci ratio: 9.379578e-02	ci left: 8.989928e-04	ci right 9.879868e-04	k: 1744	n:1850000
OR2T5   1850000 perm   1642 sec   (1127 perm/sec)   p_kst 9.427027e-04   p_cons 7.069697e-01   p_joint 5.248649e-04

Joint ci ratio: 1.253148e-01	ci left: 4.928519e-04	ci right 5.592569e-04	k: 977	n:1860000
Cons ci ratio: 1.850406e-03	ci left: 7.063324e-01	ci right 7.076411e-01	k: 1314996	n:1860000
KS ci ratio: 9.358155e-02	ci left: 8.983598e-04	ci right 9.870769e-04	k: 1752	n:1860000
OR2T5   1860000 perm   1658 sec   (1122 perm/sec)   p_kst 9.419355e-04   p_cons 7.069871e-01   p_joint 5.252688e-04

Joint ci ratio: 1.251231e-01	ci left: 4.917704e-04	ci right 5.579207e-04	k: 980	n:1870000
Cons ci ratio: 1.845597e-03	ci left: 7.063016e-01	ci right 7.076069e-01	k: 1322005	n:1870000
KS ci ratio: 9.334226e-02	ci left: 8.982561e-04	ci right 9.867237e-04	k: 1761	n:1870000
OR2T5   1870000 perm   1675 sec   (1117 perm/sec)   p_kst 9.417112e-04   p_cons 7.069545e-01   p_joint 5.240642e-04

Joint ci ratio: 1.248688e-01	ci left: 4.912157e-04	ci right 5.571472e-04	k: 984	n:1880000
Cons ci ratio: 1.840695e-03	ci left: 7.063004e-01	ci right 7.076022e-01	k: 1329069	n:1880000
KS ci ratio: 9.318382e-02	ci left: 8.965951e-04	ci right 9.847411e-04	k: 1767	n:1880000
OR2T5   1880000 perm   1691 sec   (1112 perm/sec)   p_kst 9.398936e-04   p_cons 7.069516e-01   p_joint 5.234043e-04

Joint ci ratio: 1.244902e-01	ci left: 4.916923e-04	ci right 5.574729e-04	k: 990	n:1890000
Cons ci ratio: 1.835771e-03	ci left: 7.063130e-01	ci right 7.076113e-01	k: 1336159	n:1890000
KS ci ratio: 9.294756e-02	ci left: 8.965023e-04	ci right 9.844035e-04	k: 1776	n:1890000
OR2T5   1890000 perm   1707 sec   (1107 perm/sec)   p_kst 9.396825e-04   p_cons 7.069624e-01   p_joint 5.238095e-04

Joint ci ratio: 1.242398e-01	ci left: 4.911442e-04	ci right 5.567096e-04	k: 994	n:1900000
Cons ci ratio: 1.830879e-03	ci left: 7.063270e-01	ci right 7.076219e-01	k: 1343252	n:1900000
KS ci ratio: 9.279112e-02	ci left: 8.948684e-04	ci right 9.824537e-04	k: 1782	n:1900000
OR2T5   1900000 perm   1723 sec   (1103 perm/sec)   p_kst 9.378947e-04   p_cons 7.069747e-01   p_joint 5.231579e-04

Joint ci ratio: 1.236816e-01	ci left: 4.931387e-04	ci right 5.586529e-04	k: 1003	n:1910000
Cons ci ratio: 1.826273e-03	ci left: 7.062848e-01	ci right 7.075764e-01	k: 1350238	n:1910000
KS ci ratio: 9.250617e-02	ci left: 8.958090e-04	ci right 9.832025e-04	k: 1793	n:1910000
OR2T5   1910000 perm   1740 sec   (1098 perm/sec)   p_kst 9.387435e-04   p_cons 7.069309e-01   p_joint 5.251309e-04

Joint ci ratio: 1.232526e-01	ci left: 4.941035e-04	ci right 5.595016e-04	k: 1010	n:1920000
Cons ci ratio: 1.821514e-03	ci left: 7.062858e-01	ci right 7.075740e-01	k: 1357306	n:1920000
KS ci ratio: 9.222382e-02	ci left: 8.967401e-04	ci right 9.839431e-04	k: 1804	n:1920000
OR2T5   1920000 perm   1756 sec   (1094 perm/sec)   p_kst 9.395833e-04   p_cons 7.069302e-01   p_joint 5.260417e-04

Joint ci ratio: 1.228280e-01	ci left: 4.950587e-04	ci right 5.603412e-04	k: 1017	n:1930000
Cons ci ratio: 1.816792e-03	ci left: 7.062868e-01	ci right 7.075716e-01	k: 1364374	n:1930000
KS ci ratio: 9.196940e-02	ci left: 8.971558e-04	ci right 9.841456e-04	k: 1814	n:1930000
OR2T5   1930000 perm   1772 sec   (1089 perm/sec)   p_kst 9.398964e-04   p_cons 7.069295e-01   p_joint 5.269430e-04

Joint ci ratio: 1.227077e-01	ci left: 4.935061e-04	ci right 5.585154e-04	k: 1019	n:1940000
Cons ci ratio: 1.812077e-03	ci left: 7.062945e-01	ci right 7.075760e-01	k: 1371455	n:1940000
KS ci ratio: 9.184308e-02	ci left: 8.950494e-04	ci right 9.817093e-04	k: 1819	n:1940000
OR2T5   1940000 perm   1788 sec   (1085 perm/sec)   p_kst 9.376289e-04   p_cons 7.069356e-01   p_joint 5.252577e-04

Joint ci ratio: 1.226477e-01	ci left: 4.914724e-04	ci right 5.561798e-04	k: 1020	n:1950000
Cons ci ratio: 1.807334e-03	ci left: 7.063170e-01	ci right 7.075952e-01	k: 1378565	n:1950000
KS ci ratio: 9.174245e-02	ci left: 8.924635e-04	ci right 9.787733e-04	k: 1823	n:1950000
OR2T5   1950000 perm   1804 sec   (1081 perm/sec)   p_kst 9.348718e-04   p_cons 7.069564e-01   p_joint 5.230769e-04

Joint ci ratio: 1.223485e-01	ci left: 4.914377e-04	ci right 5.559713e-04	k: 1025	n:1960000
Cons ci ratio: 1.802710e-03	ci left: 7.063204e-01	ci right 7.075953e-01	k: 1385638	n:1960000
KS ci ratio: 9.144208e-02	ci left: 8.938924e-04	ci right 9.800422e-04	k: 1835	n:1960000
OR2T5   1960000 perm   1821 sec   (1076 perm/sec)   p_kst 9.362245e-04   p_cons 7.069582e-01   p_joint 5.229592e-04

Joint ci ratio: 1.221107e-01	ci left: 4.909115e-04	ci right 5.552417e-04	k: 1029	n:1970000
Cons ci ratio: 1.798170e-03	ci left: 7.063126e-01	ci right 7.075843e-01	k: 1392689	n:1970000
KS ci ratio: 9.126832e-02	ci left: 8.928269e-04	ci right 9.787018e-04	k: 1842	n:1970000
OR2T5   1970000 perm   1837 sec   (1072 perm/sec)   p_kst 9.350254e-04   p_cons 7.069487e-01   p_joint 5.223350e-04

Joint ci ratio: 1.219333e-01	ci left: 4.899010e-04	ci right 5.539988e-04	k: 1032	n:1980000
Cons ci ratio: 1.793919e-03	ci left: 7.062457e-01	ci right 7.075143e-01	k: 1399623	n:1980000
KS ci ratio: 9.114487e-02	ci left: 8.907853e-04	ci right 9.763418e-04	k: 1847	n:1980000
OR2T5   1980000 perm   1854 sec   (1068 perm/sec)   p_kst 9.328283e-04   p_cons 7.068803e-01   p_joint 5.212121e-04

Joint ci ratio: 1.218156e-01	ci left: 4.884136e-04	ci right 5.522506e-04	k: 1034	n:1990000
Cons ci ratio: 1.789337e-03	ci left: 7.062635e-01	ci right 7.075289e-01	k: 1406724	n:1990000
KS ci ratio: 9.102191e-02	ci left: 8.887643e-04	ci right 9.740053e-04	k: 1852	n:1990000
OR2T5   1990000 perm   1871 sec   (1064 perm/sec)   p_kst 9.306533e-04   p_cons 7.068965e-01   p_joint 5.195980e-04

Joint ci ratio: 1.215809e-01	ci left: 4.879106e-04	ci right 5.515502e-04	k: 1038	n:2000000
Cons ci ratio: 1.784655e-03	ci left: 7.063121e-01	ci right 7.075743e-01	k: 1413887	n:2000000
KS ci ratio: 9.080168e-02	ci left: 8.887182e-04	ci right 9.737376e-04	k: 1861	n:2000000
OR2T5   2000000 perm   1888 sec   (1060 perm/sec)   p_kst 9.305000e-04   p_cons 7.069435e-01   p_joint 5.190000e-04

Joint ci ratio: 1.214058e-01	ci left: 4.869304e-04	ci right 5.503440e-04	k: 1041	n:2010000
Cons ci ratio: 1.780202e-03	ci left: 7.063155e-01	ci right 7.075745e-01	k: 1420960	n:2010000
KS ci ratio: 9.063153e-02	ci left: 8.877002e-04	ci right 9.724547e-04	k: 1868	n:2010000
OR2T5   2010000 perm   1904 sec   (1055 perm/sec)   p_kst 9.293532e-04   p_cons 7.069453e-01   p_joint 5.179104e-04

Joint ci ratio: 1.210578e-01	ci left: 4.874000e-04	ci right 5.506799e-04	k: 1047	n:2020000
Cons ci ratio: 1.775900e-03	ci left: 7.062916e-01	ci right 7.075475e-01	k: 1427978	n:2020000
KS ci ratio: 9.041411e-02	ci left: 8.876603e-04	ci right 9.721969e-04	k: 1877	n:2020000
OR2T5   2020000 perm   1921 sec   (1051 perm/sec)   p_kst 9.292079e-04   p_cons 7.069198e-01   p_joint 5.183168e-04

Joint ci ratio: 1.207127e-01	ci left: 4.878654e-04	ci right 5.510122e-04	k: 1053	n:2030000
Cons ci ratio: 1.771352e-03	ci left: 7.063324e-01	ci right 7.075852e-01	k: 1435127	n:2030000
KS ci ratio: 9.022217e-02	ci left: 8.871394e-04	ci right 9.714376e-04	k: 1885	n:2030000
OR2T5   2030000 perm   1939 sec   (1047 perm/sec)   p_kst 9.285714e-04   p_cons 7.069591e-01   p_joint 5.187192e-04

Joint ci ratio: 1.204843e-01	ci left: 4.873755e-04	ci right 5.503310e-04	k: 1057	n:2040000
Cons ci ratio: 1.767130e-03	ci left: 7.063048e-01	ci right 7.075545e-01	k: 1442137	n:2040000
KS ci ratio: 9.007907e-02	ci left: 8.856655e-04	ci right 9.696832e-04	k: 1891	n:2040000
OR2T5   2040000 perm   1956 sec   (1043 perm/sec)   p_kst 9.269608e-04   p_cons 7.069299e-01   p_joint 5.181373e-04

Joint ci ratio: 1.200313e-01	ci left: 4.887831e-04	ci right 5.516662e-04	k: 1065	n:2050000
Cons ci ratio: 1.762720e-03	ci left: 7.063286e-01	ci right 7.075752e-01	k: 1449252	n:2050000
KS ci ratio: 8.970044e-02	ci left: 8.889747e-04	ci right 9.729332e-04	k: 1907	n:2050000
OR2T5   2050000 perm   1973 sec   (1039 perm/sec)   p_kst 9.302439e-04   p_cons 7.069522e-01   p_joint 5.195122e-04

Joint ci ratio: 1.198067e-01	ci left: 4.882939e-04	ci right 5.509882e-04	k: 1069	n:2060000
Cons ci ratio: 1.758454e-03	ci left: 7.063260e-01	ci right 7.075696e-01	k: 1456313	n:2060000
KS ci ratio: 8.948964e-02	ci left: 8.889303e-04	ci right 9.726770e-04	k: 1916	n:2060000
OR2T5   2060000 perm   1990 sec   (1035 perm/sec)   p_kst 9.300971e-04   p_cons 7.069481e-01   p_joint 5.189320e-04

Joint ci ratio: 1.193613e-01	ci left: 4.896841e-04	ci right 5.523067e-04	k: 1077	n:2070000
Cons ci ratio: 1.754220e-03	ci left: 7.063229e-01	ci right 7.075635e-01	k: 1463373	n:2070000
KS ci ratio: 8.914144e-02	ci left: 8.917206e-04	ci right 9.753862e-04	k: 1931	n:2070000
OR2T5   2070000 perm   2008 sec   (1031 perm/sec)   p_kst 9.328502e-04   p_cons 7.069435e-01   p_joint 5.202899e-04

Joint ci ratio: 1.191405e-01	ci left: 4.891956e-04	ci right 5.516318e-04	k: 1081	n:2080000
Cons ci ratio: 1.750005e-03	ci left: 7.063227e-01	ci right 7.075603e-01	k: 1470439	n:2080000
KS ci ratio: 8.893454e-02	ci left: 8.916640e-04	ci right 9.751201e-04	k: 1940	n:2080000
OR2T5   2080000 perm   2025 sec   (1027 perm/sec)   p_kst 9.326923e-04   p_cons 7.069418e-01   p_joint 5.197115e-04

Joint ci ratio: 1.188115e-01	ci left: 4.896403e-04	ci right 5.519486e-04	k: 1087	n:2090000
Cons ci ratio: 1.745766e-03	ci left: 7.063355e-01	ci right 7.075701e-01	k: 1477532	n:2090000
KS ci ratio: 8.870631e-02	ci left: 8.920761e-04	ci right 9.753454e-04	k: 1950	n:2090000
OR2T5   2090000 perm   2043 sec   (1023 perm/sec)   p_kst 9.330144e-04   p_cons 7.069531e-01   p_joint 5.200957e-04

Joint ci ratio: 1.186481e-01	ci left: 4.886948e-04	ci right 5.507913e-04	k: 1090	n:2100000
Cons ci ratio: 1.741638e-03	ci left: 7.063291e-01	ci right 7.075608e-01	k: 1484585	n:2100000
KS ci ratio: 8.859295e-02	ci left: 8.901563e-04	ci right 9.731347e-04	k: 1955	n:2100000
OR2T5   2100000 perm   2061 sec   (1019 perm/sec)   p_kst 9.309524e-04   p_cons 7.069452e-01   p_joint 5.190476e-04

Joint ci ratio: 1.182692e-01	ci left: 4.895980e-04	ci right 5.515967e-04	k: 1097	n:2110000
Cons ci ratio: 1.737441e-03	ci left: 7.063460e-01	ci right 7.075748e-01	k: 1491687	n:2110000
KS ci ratio: 8.829993e-02	ci left: 8.919624e-04	ci right 9.748200e-04	k: 1968	n:2110000
OR2T5   2110000 perm   2079 sec   (1015 perm/sec)   p_kst 9.327014e-04   p_cons 7.069607e-01   p_joint 5.199052e-04

Joint ci ratio: 1.180544e-01	ci left: 4.891196e-04	ci right 5.509373e-04	k: 1101	n:2120000
Cons ci ratio: 1.733355e-03	ci left: 7.063434e-01	ci right 7.075692e-01	k: 1498748	n:2120000
KS ci ratio: 8.809883e-02	ci left: 8.919067e-04	ci right 9.745607e-04	k: 1977	n:2120000
OR2T5   2120000 perm   2097 sec   (1011 perm/sec)   p_kst 9.325472e-04   p_cons 7.069566e-01   p_joint 5.193396e-04

Joint ci ratio: 1.178941e-01	ci left: 4.881901e-04	ci right 5.498008e-04	k: 1104	n:2130000
Cons ci ratio: 1.729185e-03	ci left: 7.063681e-01	ci right 7.075910e-01	k: 1505867	n:2130000
KS ci ratio: 8.785484e-02	ci left: 8.927701e-04	ci right 9.752632e-04	k: 1988	n:2130000
OR2T5   2130000 perm   2115 sec   (1007 perm/sec)   p_kst 9.333333e-04   p_cons 7.069798e-01   p_joint 5.183099e-04

Joint ci ratio: 1.175224e-01	ci left: 4.890836e-04	ci right 5.505989e-04	k: 1111	n:2140000
Cons ci ratio: 1.725099e-03	ci left: 7.063794e-01	ci right 7.075995e-01	k: 1512958	n:2140000
KS ci ratio: 8.767872e-02	ci left: 8.922545e-04	ci right 9.745262e-04	k: 1996	n:2140000
OR2T5   2140000 perm   2133 sec   (1003 perm/sec)   p_kst 9.327103e-04   p_cons 7.069897e-01   p_joint 5.191589e-04

Joint ci ratio: 1.171542e-01	ci left: 4.899691e-04	ci right 5.513893e-04	k: 1118	n:2150000
Cons ci ratio: 1.720978e-03	ci left: 7.064060e-01	ci right 7.076232e-01	k: 1520082	n:2150000
KS ci ratio: 8.748182e-02	ci left: 8.921988e-04	ci right 9.742713e-04	k: 2005	n:2150000
OR2T5   2150000 perm   2151 sec   (1000 perm/sec)   p_kst 9.325581e-04   p_cons 7.070149e-01   p_joint 5.200000e-04

Joint ci ratio: 1.169975e-01	ci left: 4.890489e-04	ci right 5.502661e-04	k: 1121	n:2160000
Cons ci ratio: 1.716863e-03	ci left: 7.064379e-01	ci right 7.076523e-01	k: 1527218	n:2160000
KS ci ratio: 8.739484e-02	ci left: 8.898796e-04	ci right 9.716531e-04	k: 2009	n:2160000
OR2T5   2160000 perm   2169 sec   (996 perm/sec)   p_kst 9.300926e-04   p_cons 7.070454e-01   p_joint 5.189815e-04

Joint ci ratio: 1.166859e-01	ci left: 4.894794e-04	ci right 5.505761e-04	k: 1127	n:2170000
Cons ci ratio: 1.712831e-03	ci left: 7.064566e-01	ci right 7.076682e-01	k: 1534326	n:2170000
KS ci ratio: 8.719984e-02	ci left: 8.898357e-04	ci right 9.714134e-04	k: 2018	n:2170000
OR2T5   2170000 perm   2187 sec   (992 perm/sec)   p_kst 9.299539e-04   p_cons 7.070627e-01   p_joint 5.193548e-04

Joint ci ratio: 1.164282e-01	ci left: 4.894608e-04	ci right 5.504109e-04	k: 1132	n:2180000
Cons ci ratio: 1.708801e-03	ci left: 7.064816e-01	ci right 7.076903e-01	k: 1541448	n:2180000
KS ci ratio: 8.692038e-02	ci left: 8.915874e-04	ci right 9.730505e-04	k: 2031	n:2180000
OR2T5   2180000 perm   2206 sec   (988 perm/sec)   p_kst 9.316514e-04   p_cons 7.070862e-01   p_joint 5.192661e-04

Joint ci ratio: 1.162744e-01	ci left: 4.885558e-04	ci right 5.493074e-04	k: 1135	n:2190000
Cons ci ratio: 1.704904e-03	ci left: 7.064808e-01	ci right 7.076867e-01	k: 1548514	n:2190000
KS ci ratio: 8.679240e-02	ci left: 8.901964e-04	ci right 9.714066e-04	k: 2037	n:2190000
OR2T5   2190000 perm   2224 sec   (985 perm/sec)   p_kst 9.301370e-04   p_cons 7.070840e-01   p_joint 5.182648e-04

Joint ci ratio: 1.157659e-01	ci left: 4.907486e-04	ci right 5.514878e-04	k: 1145	n:2200000
Cons ci ratio: 1.701026e-03	ci left: 7.064818e-01	ci right 7.076850e-01	k: 1555584	n:2200000
KS ci ratio: 8.645357e-02	ci left: 8.932653e-04	ci right 9.744213e-04	k: 2053	n:2200000
OR2T5   2200000 perm   2243 sec   (981 perm/sec)   p_kst 9.331818e-04   p_cons 7.070836e-01   p_joint 5.204545e-04

Joint ci ratio: 1.156147e-01	ci left: 4.898462e-04	ci right 5.503891e-04	k: 1148	n:2210000
Cons ci ratio: 1.697171e-03	ci left: 7.064837e-01	ci right 7.076841e-01	k: 1562656	n:2210000
KS ci ratio: 8.634862e-02	ci left: 8.914369e-04	ci right 9.723235e-04	k: 2058	n:2210000
OR2T5   2210000 perm   2261 sec   (977 perm/sec)   p_kst 9.312217e-04   p_cons 7.070842e-01   p_joint 5.194570e-04

Joint ci ratio: 1.154140e-01	ci left: 4.893894e-04	ci right 5.497637e-04	k: 1152	n:2220000
Cons ci ratio: 1.693420e-03	ci left: 7.064666e-01	ci right 7.076644e-01	k: 1569686	n:2220000
KS ci ratio: 8.620226e-02	ci left: 8.905065e-04	ci right 9.711648e-04	k: 2065	n:2220000
OR2T5   2220000 perm   2280 sec   (974 perm/sec)   p_kst 9.301802e-04   p_cons 7.070658e-01   p_joint 5.189189e-04

Joint ci ratio: 1.150652e-01	ci left: 4.902434e-04	ci right 5.505278e-04	k: 1159	n:2230000
Cons ci ratio: 1.689764e-03	ci left: 7.064322e-01	ci right 7.076273e-01	k: 1576677	n:2230000
KS ci ratio: 8.595294e-02	ci left: 8.917786e-04	ci right 9.723068e-04	k: 2077	n:2230000
OR2T5   2230000 perm   2298 sec   (970 perm/sec)   p_kst 9.313901e-04   p_cons 7.070300e-01   p_joint 5.197309e-04

Joint ci ratio: 1.149662e-01	ci left: 4.889220e-04	ci right 5.489887e-04	k: 1161	n:2240000
Cons ci ratio: 1.686109e-03	ci left: 7.064039e-01	ci right 7.075964e-01	k: 1583681	n:2240000
KS ci ratio: 8.584981e-02	ci left: 8.899816e-04	ci right 9.702462e-04	k: 2082	n:2240000
OR2T5   2240000 perm   2317 sec   (967 perm/sec)   p_kst 9.294643e-04   p_cons 7.070004e-01   p_joint 5.183036e-04

Joint ci ratio: 1.146214e-01	ci left: 4.897708e-04	ci right 5.497491e-04	k: 1168	n:2250000
Cons ci ratio: 1.682390e-03	ci left: 7.063972e-01	ci right 7.075871e-01	k: 1590733	n:2250000
KS ci ratio: 8.556266e-02	ci left: 8.921150e-04	ci right 9.722895e-04	k: 2096	n:2250000
OR2T5   2250000 perm   2335 sec   (964 perm/sec)   p_kst 9.315556e-04   p_cons 7.069924e-01   p_joint 5.191111e-04

Joint ci ratio: 1.143284e-01	ci left: 4.901825e-04	ci right 5.500475e-04	k: 1174	n:2260000
Cons ci ratio: 1.678712e-03	ci left: 7.063866e-01	ci right 7.075739e-01	k: 1597776	n:2260000
KS ci ratio: 8.542025e-02	ci left: 8.911987e-04	ci right 9.711509e-04	k: 2103	n:2260000
OR2T5   2260000 perm   2355 sec   (960 perm/sec)   p_kst 9.305310e-04   p_cons 7.069805e-01   p_joint 5.194690e-04

Joint ci ratio: 1.138929e-01	ci left: 4.918748e-04	ci right 5.517022e-04	k: 1183	n:2270000
Cons ci ratio: 1.674962e-03	ci left: 7.063999e-01	ci right 7.075845e-01	k: 1604873	n:2270000
KS ci ratio: 8.513738e-02	ci left: 8.933086e-04	ci right 9.731716e-04	k: 2117	n:2270000
OR2T5   2270000 perm   2373 sec   (956 perm/sec)   p_kst 9.325991e-04   p_cons 7.069925e-01   p_joint 5.211454e-04

Joint ci ratio: 1.138450e-01	ci left: 4.901435e-04	ci right 5.497335e-04	k: 1184	n:2280000
Cons ci ratio: 1.671262e-03	ci left: 7.064070e-01	ci right 7.075890e-01	k: 1611956	n:2280000
KS ci ratio: 8.497707e-02	ci left: 8.928248e-04	ci right 9.724867e-04	k: 2125	n:2280000
OR2T5   2280000 perm   2392 sec   (953 perm/sec)   p_kst 9.320175e-04   p_cons 7.069982e-01   p_joint 5.192982e-04

Joint ci ratio: 1.137012e-01	ci left: 4.892759e-04	ci right 5.486803e-04	k: 1187	n:2290000
Cons ci ratio: 1.667635e-03	ci left: 7.064017e-01	ci right 7.075812e-01	k: 1619011	n:2290000
KS ci ratio: 8.489734e-02	ci left: 8.906355e-04	ci right 9.700239e-04	k: 2129	n:2290000
OR2T5   2290000 perm   2412 sec   (950 perm/sec)   p_kst 9.296943e-04   p_cons 7.069917e-01   p_joint 5.183406e-04

Joint ci ratio: 1.136057e-01	ci left: 4.879934e-04	ci right 5.471890e-04	k: 1189	n:2300000
Cons ci ratio: 1.664007e-03	ci left: 7.064026e-01	ci right 7.075795e-01	k: 1626080	n:2300000
KS ci ratio: 8.479795e-02	ci left: 8.888910e-04	ci right 9.680264e-04	k: 2134	n:2300000
OR2T5   2300000 perm   2430 sec   (946 perm/sec)   p_kst 9.278261e-04   p_cons 7.069913e-01   p_joint 5.169565e-04

Joint ci ratio: 1.134153e-01	ci left: 4.875633e-04	ci right 5.466010e-04	k: 1193	n:2310000
Cons ci ratio: 1.660410e-03	ci left: 7.064018e-01	ci right 7.075761e-01	k: 1633145	n:2310000
KS ci ratio: 8.463955e-02	ci left: 8.884328e-04	ci right 9.673724e-04	k: 2142	n:2310000
OR2T5   2310000 perm   2450 sec   (943 perm/sec)   p_kst 9.272727e-04   p_cons 7.069892e-01   p_joint 5.164502e-04

Joint ci ratio: 1.133205e-01	ci left: 4.862994e-04	ci right 5.451315e-04	k: 1195	n:2320000
Cons ci ratio: 1.656716e-03	ci left: 7.064311e-01	ci right 7.076029e-01	k: 1640280	n:2320000
KS ci ratio: 8.450169e-02	ci left: 8.875567e-04	ci right 9.662838e-04	k: 2149	n:2320000
OR2T5   2320000 perm   2469 sec   (940 perm/sec)   p_kst 9.262931e-04   p_cons 7.070172e-01   p_joint 5.150862e-04

Joint ci ratio: 1.130373e-01	ci left: 4.867145e-04	ci right 5.454398e-04	k: 1201	n:2330000
Cons ci ratio: 1.653053e-03	ci left: 7.064585e-01	ci right 7.076277e-01	k: 1647411	n:2330000
KS ci ratio: 8.430585e-02	ci left: 8.879488e-04	ci right 9.665190e-04	k: 2159	n:2330000
OR2T5   2330000 perm   2488 sec   (936 perm/sec)   p_kst 9.266094e-04   p_cons 7.070433e-01   p_joint 5.154506e-04

Joint ci ratio: 1.126164e-01	ci left: 4.883721e-04	ci right 5.470635e-04	k: 1210	n:2340000
Cons ci ratio: 1.649468e-03	ci left: 7.064720e-01	ci right 7.076386e-01	k: 1654510	n:2340000
KS ci ratio: 8.405322e-02	ci left: 8.895927e-04	ci right 9.680611e-04	k: 2172	n:2340000
OR2T5   2340000 perm   2508 sec   (933 perm/sec)   p_kst 9.282051e-04   p_cons 7.070556e-01   p_joint 5.170940e-04

Joint ci ratio: 1.123384e-01	ci left: 4.887753e-04	ci right 5.473606e-04	k: 1216	n:2350000
Cons ci ratio: 1.645863e-03	ci left: 7.064964e-01	ci right 7.076605e-01	k: 1661635	n:2350000
KS ci ratio: 8.386047e-02	ci left: 8.899732e-04	ci right 9.682863e-04	k: 2182	n:2350000
OR2T5   2350000 perm   2527 sec   (930 perm/sec)   p_kst 9.285106e-04   p_cons 7.070787e-01   p_joint 5.174468e-04

Joint ci ratio: 1.121083e-01	ci left: 4.887634e-04	ci right 5.472193e-04	k: 1221	n:2360000
Cons ci ratio: 1.642330e-03	ci left: 7.065083e-01	ci right 7.076700e-01	k: 1668731	n:2360000
KS ci ratio: 8.366904e-02	ci left: 8.903507e-04	ci right 9.685094e-04	k: 2192	n:2360000
OR2T5   2360000 perm   2546 sec   (927 perm/sec)   p_kst 9.288136e-04   p_cons 7.070894e-01   p_joint 5.173729e-04

Joint ci ratio: 1.119253e-01	ci left: 4.883416e-04	ci right 5.466454e-04	k: 1225	n:2370000
Cons ci ratio: 1.638844e-03	ci left: 7.065138e-01	ci right 7.076730e-01	k: 1675812	n:2370000
KS ci ratio: 8.342208e-02	ci left: 8.919646e-04	ci right 9.700226e-04	k: 2205	n:2370000
OR2T5   2370000 perm   2566 sec   (923 perm/sec)   p_kst 9.303797e-04   p_cons 7.070937e-01   p_joint 5.168776e-04

Joint ci ratio: 1.118342e-01	ci left: 4.871065e-04	ci right 5.452124e-04	k: 1227	n:2380000
Cons ci ratio: 1.635335e-03	ci left: 7.065310e-01	ci right 7.076878e-01	k: 1682921	n:2380000
KS ci ratio: 8.323363e-02	ci left: 8.923310e-04	ci right 9.702361e-04	k: 2215	n:2380000
OR2T5   2380000 perm   2587 sec   (920 perm/sec)   p_kst 9.306723e-04   p_cons 7.071097e-01   p_joint 5.155462e-04

Joint ci ratio: 1.116526e-01	ci left: 4.866953e-04	ci right 5.446516e-04	k: 1231	n:2390000
Cons ci ratio: 1.631869e-03	ci left: 7.065427e-01	ci right 7.076970e-01	k: 1690017	n:2390000
KS ci ratio: 8.308381e-02	ci left: 8.918750e-04	ci right 9.695934e-04	k: 2223	n:2390000
OR2T5   2390000 perm   2607 sec   (917 perm/sec)   p_kst 9.301255e-04   p_cons 7.071201e-01   p_joint 5.150628e-04

Joint ci ratio: 1.114267e-01	ci left: 4.866926e-04	ci right 5.445237e-04	k: 1236	n:2400000
Cons ci ratio: 1.628389e-03	ci left: 7.065634e-01	ci right 7.077153e-01	k: 1697135	n:2400000
KS ci ratio: 8.289764e-02	ci left: 8.922391e-04	ci right 9.698065e-04	k: 2233	n:2400000
OR2T5   2400000 perm   2627 sec   (914 perm/sec)   p_kst 9.304167e-04   p_cons 7.071396e-01   p_joint 5.150000e-04

Joint ci ratio: 1.112022e-01	ci left: 4.866901e-04	ci right 5.443967e-04	k: 1241	n:2410000
Cons ci ratio: 1.624890e-03	ci left: 7.065943e-01	ci right 7.077438e-01	k: 1704278	n:2410000
KS ci ratio: 8.273117e-02	ci left: 8.921940e-04	ci right 9.695942e-04	k: 2242	n:2410000
OR2T5   2410000 perm   2647 sec   (911 perm/sec)   p_kst 9.302905e-04   p_cons 7.071693e-01   p_joint 5.149378e-04

Joint ci ratio: 1.110682e-01	ci left: 4.858841e-04	ci right 5.434212e-04	k: 1244	n:2420000
Cons ci ratio: 1.621542e-03	ci left: 7.065923e-01	ci right 7.077394e-01	k: 1711342	n:2420000
KS ci ratio: 8.252902e-02	ci left: 8.929588e-04	ci right 9.702270e-04	k: 2253	n:2420000
OR2T5   2420000 perm   2667 sec   (908 perm/sec)   p_kst 9.309917e-04   p_cons 7.071661e-01   p_joint 5.140496e-04

Joint ci ratio: 1.108458e-01	ci left: 4.858851e-04	ci right 5.432996e-04	k: 1249	n:2430000
Cons ci ratio: 1.618186e-03	ci left: 7.065978e-01	ci right 7.077425e-01	k: 1718424	n:2430000
KS ci ratio: 8.227382e-02	ci left: 8.949267e-04	ci right 9.721142e-04	k: 2267	n:2430000
OR2T5   2430000 perm   2687 sec   (904 perm/sec)   p_kst 9.329218e-04   p_cons 7.071704e-01   p_joint 5.139918e-04

Joint ci ratio: 1.108016e-01	ci left: 4.842922e-04	ci right 5.414942e-04	k: 1250	n:2440000
Cons ci ratio: 1.614760e-03	ci left: 7.066261e-01	ci right 7.077685e-01	k: 1725562	n:2440000
KS ci ratio: 8.220146e-02	ci left: 8.928645e-04	ci right 9.698032e-04	k: 2271	n:2440000
OR2T5   2440000 perm   2707 sec   (901 perm/sec)   p_kst 9.307377e-04   p_cons 7.071975e-01   p_joint 5.122951e-04

Joint ci ratio: 1.105368e-01	ci left: 4.846967e-04	ci right 5.418008e-04	k: 1256	n:2450000
Cons ci ratio: 1.611506e-03	ci left: 7.066159e-01	ci right 7.077559e-01	k: 1732606	n:2450000
KS ci ratio: 8.205714e-02	ci left: 8.924184e-04	ci right 9.691772e-04	k: 2279	n:2450000
OR2T5   2450000 perm   2727 sec   (898 perm/sec)   p_kst 9.302041e-04   p_cons 7.071861e-01   p_joint 5.126531e-04

Joint ci ratio: 1.104052e-01	ci left: 4.839122e-04	ci right 5.408515e-04	k: 1259	n:2460000
Cons ci ratio: 1.608238e-03	ci left: 7.066142e-01	ci right 7.077519e-01	k: 1739671	n:2460000
KS ci ratio: 8.196739e-02	ci left: 8.907815e-04	ci right 9.673117e-04	k: 2284	n:2460000
OR2T5   2460000 perm   2747 sec   (895 perm/sec)   p_kst 9.284553e-04   p_cons 7.071833e-01   p_joint 5.117886e-04

Joint ci ratio: 1.102304e-01	ci left: 4.835278e-04	ci right 5.403259e-04	k: 1263	n:2470000
Cons ci ratio: 1.604922e-03	ci left: 7.066300e-01	ci right 7.077654e-01	k: 1746779	n:2470000
KS ci ratio: 8.175295e-02	ci left: 8.919340e-04	ci right 9.683532e-04	k: 2296	n:2470000
OR2T5   2470000 perm   2767 sec   (893 perm/sec)   p_kst 9.295547e-04   p_cons 7.071980e-01   p_joint 5.113360e-04

Joint ci ratio: 1.099697e-01	ci left: 4.839308e-04	ci right 5.406332e-04	k: 1269	n:2480000
Cons ci ratio: 1.601660e-03	ci left: 7.066372e-01	ci right 7.077703e-01	k: 1753866	n:2480000
KS ci ratio: 8.152253e-02	ci left: 8.934724e-04	ci right 9.697974e-04	k: 2309	n:2480000
OR2T5   2480000 perm   2788 sec   (890 perm/sec)   p_kst 9.310484e-04   p_cons 7.072040e-01   p_joint 5.116935e-04

Joint ci ratio: 1.098401e-01	ci left: 4.831590e-04	ci right 5.396999e-04	k: 1272	n:2490000
Cons ci ratio: 1.598436e-03	ci left: 7.066396e-01	ci right 7.077704e-01	k: 1760941	n:2490000
KS ci ratio: 8.134663e-02	ci left: 8.938185e-04	ci right 9.700005e-04	k: 2319	n:2490000
OR2T5   2490000 perm   2808 sec   (887 perm/sec)   p_kst 9.313253e-04   p_cons 7.072052e-01   p_joint 5.108434e-04

Joint ci ratio: 1.096250e-01	ci left: 4.831715e-04	ci right 5.395959e-04	k: 1277	n:2500000
Cons ci ratio: 1.595247e-03	ci left: 7.066379e-01	ci right 7.077664e-01	k: 1768006	n:2500000
KS ci ratio: 8.117187e-02	ci left: 8.941619e-04	ci right 9.702017e-04	k: 2329	n:2500000
OR2T5   2500000 perm   2829 sec   (884 perm/sec)   p_kst 9.316000e-04   p_cons 7.072024e-01   p_joint 5.108000e-04

Joint ci ratio: 1.092834e-01	ci left: 4.843465e-04	ci right 5.407206e-04	k: 1285	n:2510000
Cons ci ratio: 1.592112e-03	ci left: 7.066270e-01	ci right 7.077534e-01	k: 1775048	n:2510000
KS ci ratio: 8.098091e-02	ci left: 8.948932e-04	ci right 9.708077e-04	k: 2340	n:2510000
OR2T5   2510000 perm   2849 sec   (881 perm/sec)   p_kst 9.322709e-04   p_cons 7.071904e-01   p_joint 5.119522e-04

Joint ci ratio: 1.089450e-01	ci left: 4.855125e-04	ci right 5.418361e-04	k: 1293	n:2520000
Cons ci ratio: 1.588982e-03	ci left: 7.066199e-01	ci right 7.077439e-01	k: 1782099	n:2520000
KS ci ratio: 8.077411e-02	ci left: 8.960076e-04	ci right 9.718134e-04	k: 2352	n:2520000
OR2T5   2520000 perm   2870 sec   (878 perm/sec)   p_kst 9.333333e-04   p_cons 7.071821e-01   p_joint 5.130952e-04

Joint ci ratio: 1.088610e-01	ci left: 4.843625e-04	ci right 5.405065e-04	k: 1295	n:2530000
Cons ci ratio: 1.585806e-03	ci left: 7.066294e-01	ci right 7.077512e-01	k: 1789192	n:2530000
KS ci ratio: 8.067137e-02	ci left: 8.947897e-04	ci right 9.703917e-04	k: 2358	n:2530000
OR2T5   2530000 perm   2891 sec   (875 perm/sec)   p_kst 9.320158e-04   p_cons 7.071905e-01   p_joint 5.118577e-04

Joint ci ratio: 1.086516e-01	ci left: 4.843705e-04	ci right 5.404005e-04	k: 1300	n:2540000
Cons ci ratio: 1.582732e-03	ci left: 7.066171e-01	ci right 7.077368e-01	k: 1796230	n:2540000
KS ci ratio: 8.053495e-02	ci left: 8.943531e-04	ci right 9.697843e-04	k: 2366	n:2540000
OR2T5   2540000 perm   2912 sec   (872 perm/sec)   p_kst 9.314961e-04   p_cons 7.071772e-01   p_joint 5.118110e-04

Joint ci ratio: 1.084019e-01	ci left: 4.847601e-04	ci right 5.406981e-04	k: 1306	n:2550000
Cons ci ratio: 1.579612e-03	ci left: 7.066218e-01	ci right 7.077393e-01	k: 1803311	n:2550000
KS ci ratio: 8.031464e-02	ci left: 8.958413e-04	ci right 9.711818e-04	k: 2379	n:2550000
OR2T5   2550000 perm   2933 sec   (869 perm/sec)   p_kst 9.329412e-04   p_cons 7.071808e-01   p_joint 5.121569e-04

Joint ci ratio: 1.082364e-01	ci left: 4.843866e-04	ci right 5.401908e-04	k: 1310	n:2560000
Cons ci ratio: 1.576646e-03	ci left: 7.065909e-01	ci right 7.077062e-01	k: 1810301	n:2560000
KS ci ratio: 8.014644e-02	ci left: 8.961698e-04	ci right 9.713727e-04	k: 2389	n:2560000
OR2T5   2560000 perm   2954 sec   (867 perm/sec)   p_kst 9.332031e-04   p_cons 7.071488e-01   p_joint 5.117188e-04

Joint ci ratio: 1.078667e-01	ci left: 4.859092e-04	ci right 5.416854e-04	k: 1319	n:2570000
Cons ci ratio: 1.573441e-03	ci left: 7.066273e-01	ci right 7.077404e-01	k: 1817463	n:2570000
KS ci ratio: 7.996261e-02	ci left: 8.968773e-04	ci right 9.719588e-04	k: 2400	n:2570000
OR2T5   2570000 perm   2975 sec   (864 perm/sec)   p_kst 9.338521e-04   p_cons 7.071840e-01   p_joint 5.132296e-04

Joint ci ratio: 1.077852e-01	ci left: 4.847801e-04	ci right 5.403820e-04	k: 1321	n:2580000
Cons ci ratio: 1.570423e-03	ci left: 7.066195e-01	ci right 7.077304e-01	k: 1824512	n:2580000
KS ci ratio: 7.986293e-02	ci left: 8.956801e-04	ci right 9.705636e-04	k: 2406	n:2580000
OR2T5   2580000 perm   2996 sec   (861 perm/sec)   p_kst 9.325581e-04   p_cons 7.071752e-01   p_joint 5.120155e-04

Joint ci ratio: 1.075414e-01	ci left: 4.851626e-04	ci right 5.406745e-04	k: 1327	n:2590000
Cons ci ratio: 1.567363e-03	ci left: 7.066272e-01	ci right 7.077360e-01	k: 1831601	n:2590000
KS ci ratio: 7.973057e-02	ci left: 8.952490e-04	ci right 9.699667e-04	k: 2414	n:2590000
OR2T5   2590000 perm   3017 sec   (858 perm/sec)   p_kst 9.320463e-04   p_cons 7.071819e-01   p_joint 5.123552e-04

Joint ci ratio: 1.074202e-01	ci left: 4.844194e-04	ci right 5.397799e-04	k: 1330	n:2600000
Cons ci ratio: 1.564345e-03	ci left: 7.066284e-01	ci right 7.077350e-01	k: 1838673	n:2600000
KS ci ratio: 7.961530e-02	ci left: 8.944444e-04	ci right 9.689820e-04	k: 2421	n:2600000
OR2T5   2600000 perm   3039 sec   (856 perm/sec)   p_kst 9.311538e-04   p_cons 7.071819e-01   p_joint 5.115385e-04

Joint ci ratio: 1.072190e-01	ci left: 4.844277e-04	ci right 5.396789e-04	k: 1335	n:2610000
Cons ci ratio: 1.561373e-03	ci left: 7.066222e-01	ci right 7.077267e-01	k: 1845726	n:2610000
KS ci ratio: 7.948416e-02	ci left: 8.940216e-04	ci right 9.683956e-04	k: 2429	n:2610000
OR2T5   2610000 perm   3061 sec   (853 perm/sec)   p_kst 9.306513e-04   p_cons 7.071747e-01   p_joint 5.114943e-04

Joint ci ratio: 1.070588e-01	ci left: 4.840645e-04	ci right 5.391866e-04	k: 1339	n:2620000
Cons ci ratio: 1.558333e-03	ci left: 7.066386e-01	ci right 7.077410e-01	k: 1852838	n:2620000
KS ci ratio: 7.933738e-02	ci left: 8.939762e-04	ci right 9.682027e-04	k: 2438	n:2620000
OR2T5   2620000 perm   3083 sec   (850 perm/sec)   p_kst 9.305344e-04   p_cons 7.071901e-01   p_joint 5.110687e-04

Joint ci ratio: 1.068597e-01	ci left: 4.840742e-04	ci right 5.390885e-04	k: 1344	n:2630000
Cons ci ratio: 1.555361e-03	ci left: 7.066413e-01	ci right 7.077416e-01	k: 1859914	n:2630000
KS ci ratio: 7.917522e-02	ci left: 8.943040e-04	ci right 9.683989e-04	k: 2448	n:2630000
OR2T5   2630000 perm   3105 sec   (847 perm/sec)   p_kst 9.307985e-04   p_cons 7.071916e-01   p_joint 5.110266e-04

Joint ci ratio: 1.065826e-01	ci left: 4.848214e-04	ci right 5.397687e-04	k: 1351	n:2640000
Cons ci ratio: 1.552491e-03	ci left: 7.066215e-01	ci right 7.077197e-01	k: 1866931	n:2640000
KS ci ratio: 7.898192e-02	ci left: 8.953720e-04	ci right 9.693661e-04	k: 2460	n:2640000
OR2T5   2640000 perm   3127 sec   (844 perm/sec)   p_kst 9.318182e-04   p_cons 7.071708e-01   p_joint 5.117424e-04

Joint ci ratio: 1.064253e-01	ci left: 4.844611e-04	ci right 5.392815e-04	k: 1355	n:2650000
Cons ci ratio: 1.549515e-03	ci left: 7.066343e-01	ci right 7.077305e-01	k: 1874034	n:2650000
KS ci ratio: 7.885387e-02	ci left: 8.949526e-04	ci right 9.687865e-04	k: 2468	n:2650000
OR2T5   2650000 perm   3149 sec   (841 perm/sec)   p_kst 9.313208e-04   p_cons 7.071826e-01   p_joint 5.113208e-04

Joint ci ratio: 1.062687e-01	ci left: 4.841036e-04	ci right 5.387979e-04	k: 1359	n:2660000
Cons ci ratio: 1.546634e-03	ci left: 7.066260e-01	ci right 7.077201e-01	k: 1881081	n:2660000
KS ci ratio: 7.874236e-02	ci left: 8.941678e-04	ci right 9.678279e-04	k: 2475	n:2660000
OR2T5   2660000 perm   3172 sec   (839 perm/sec)   p_kst 9.304511e-04   p_cons 7.071733e-01   p_joint 5.109023e-04

Joint ci ratio: 1.060739e-01	ci left: 4.841134e-04	ci right 5.387023e-04	k: 1364	n:2670000
Cons ci ratio: 1.543782e-03	ci left: 7.066144e-01	ci right 7.077065e-01	k: 1888119	n:2670000
KS ci ratio: 7.859965e-02	ci left: 8.941233e-04	ci right 9.676402e-04	k: 2484	n:2670000
OR2T5   2670000 perm   3195 sec   (836 perm/sec)   p_kst 9.303371e-04   p_cons 7.071607e-01   p_joint 5.108614e-04

Joint ci ratio: 1.058802e-01	ci left: 4.841232e-04	ci right 5.386073e-04	k: 1369	n:2680000
Cons ci ratio: 1.540870e-03	ci left: 7.066234e-01	ci right 7.077134e-01	k: 1895212	n:2680000
KS ci ratio: 7.850498e-02	ci left: 8.929819e-04	ci right 9.663124e-04	k: 2490	n:2680000
OR2T5   2680000 perm   3218 sec   (833 perm/sec)   p_kst 9.291045e-04   p_cons 7.071687e-01   p_joint 5.108209e-04

Joint ci ratio: 1.054194e-01	ci left: 4.866666e-04	ci right 5.411838e-04	k: 1381	n:2690000
Cons ci ratio: 1.537995e-03	ci left: 7.066264e-01	ci right 7.077144e-01	k: 1902289	n:2690000
KS ci ratio: 7.828523e-02	ci left: 8.947647e-04	ci right 9.680265e-04	k: 2504	n:2690000
OR2T5   2690000 perm   3241 sec   (830 perm/sec)   p_kst 9.308550e-04   p_cons 7.071706e-01   p_joint 5.133829e-04

Joint ci ratio: 1.052292e-01	ci left: 4.866672e-04	ci right 5.410800e-04	k: 1386	n:2700000
Cons ci ratio: 1.535132e-03	ci left: 7.066309e-01	ci right 7.077168e-01	k: 1909370	n:2700000
KS ci ratio: 7.812943e-02	ci left: 8.950820e-04	ci right 9.682174e-04	k: 2514	n:2700000
OR2T5   2700000 perm   3264 sec   (827 perm/sec)   p_kst 9.311111e-04   p_cons 7.071741e-01   p_joint 5.133333e-04

Joint ci ratio: 1.051535e-01	ci left: 4.855900e-04	ci right 5.398409e-04	k: 1388	n:2710000
Cons ci ratio: 1.532286e-03	ci left: 7.066349e-01	ci right 7.077189e-01	k: 1916450	n:2710000
KS ci ratio: 7.797455e-02	ci left: 8.953972e-04	ci right 9.684067e-04	k: 2524	n:2710000
OR2T5   2710000 perm   3286 sec   (825 perm/sec)   p_kst 9.313653e-04   p_cons 7.071771e-01   p_joint 5.121771e-04

Joint ci ratio: 1.048144e-01	ci left: 4.870267e-04	ci right 5.412518e-04	k: 1397	n:2720000
Cons ci ratio: 1.529542e-03	ci left: 7.066154e-01	ci right 7.076974e-01	k: 1923466	n:2720000
KS ci ratio: 7.780523e-02	ci left: 8.960706e-04	ci right 9.689692e-04	k: 2535	n:2720000
OR2T5   2720000 perm   3310 sec   (822 perm/sec)   p_kst 9.319853e-04   p_cons 7.071566e-01   p_joint 5.136029e-04

Joint ci ratio: 1.044785e-01	ci left: 4.884531e-04	ci right 5.426521e-04	k: 1406	n:2730000
Cons ci ratio: 1.526667e-03	ci left: 7.066356e-01	ci right 7.077156e-01	k: 1930590	n:2730000
KS ci ratio: 7.757607e-02	ci left: 8.981761e-04	ci right 9.710210e-04	k: 2550	n:2730000
OR2T5   2730000 perm   3334 sec   (819 perm/sec)   p_kst 9.340659e-04   p_cons 7.071758e-01   p_joint 5.150183e-04

Joint ci ratio: 1.042934e-01	ci left: 4.884476e-04	ci right 5.425441e-04	k: 1411	n:2740000
Cons ci ratio: 1.523901e-03	ci left: 7.066305e-01	ci right 7.077085e-01	k: 1937645	n:2740000
KS ci ratio: 7.745473e-02	ci left: 8.977612e-04	ci right 9.704535e-04	k: 2558	n:2740000
OR2T5   2740000 perm   3357 sec   (816 perm/sec)   p_kst 9.335766e-04   p_cons 7.071697e-01   p_joint 5.149635e-04

Joint ci ratio: 1.040725e-01	ci left: 4.887964e-04	ci right 5.428098e-04	k: 1417	n:2750000
Cons ci ratio: 1.521058e-03	ci left: 7.066505e-01	ci right 7.077265e-01	k: 1944769	n:2750000
KS ci ratio: 7.725869e-02	ci left: 8.991325e-04	ci right 9.717432e-04	k: 2571	n:2750000
OR2T5   2750000 perm   3379 sec   (814 perm/sec)   p_kst 9.349091e-04   p_cons 7.071887e-01   p_joint 5.152727e-04

Joint ci ratio: 1.037801e-01	ci left: 4.898487e-04	ci right 5.438170e-04	k: 1425	n:2760000
Cons ci ratio: 1.518359e-03	ci left: 7.066356e-01	ci right 7.077097e-01	k: 1951797	n:2760000
KS ci ratio: 7.707905e-02	ci left: 9.001387e-04	ci right 9.726541e-04	k: 2583	n:2760000
OR2T5   2760000 perm   3403 sec   (811 perm/sec)   p_kst 9.358696e-04   p_cons 7.071728e-01   p_joint 5.163043e-04

Joint ci ratio: 1.034541e-01	ci left: 4.912452e-04	ci right 5.451870e-04	k: 1434	n:2770000
Cons ci ratio: 1.515611e-03	ci left: 7.066377e-01	ci right 7.077099e-01	k: 1958872	n:2770000
KS ci ratio: 7.691549e-02	ci left: 9.007838e-04	ci right 9.731903e-04	k: 2594	n:2770000
OR2T5   2770000 perm   3426 sec   (808 perm/sec)   p_kst 9.364621e-04   p_cons 7.071740e-01   p_joint 5.176895e-04

Joint ci ratio: 1.032026e-01	ci left: 4.919310e-04	ci right 5.458089e-04	k: 1441	n:2780000
Cons ci ratio: 1.512894e-03	ci left: 7.066355e-01	ci right 7.077058e-01	k: 1965935	n:2780000
KS ci ratio: 7.670878e-02	ci left: 9.024828e-04	ci right 9.748222e-04	k: 2608	n:2780000
OR2T5   2780000 perm   3450 sec   (806 perm/sec)   p_kst 9.381295e-04   p_cons 7.071709e-01   p_joint 5.183453e-04

Joint ci ratio: 1.028820e-01	ci left: 4.933105e-04	ci right 5.471615e-04	k: 1450	n:2790000
Cons ci ratio: 1.510171e-03	ci left: 7.066391e-01	ci right 7.077074e-01	k: 1973014	n:2790000
KS ci ratio: 7.647455e-02	ci left: 9.048731e-04	ci right 9.771728e-04	k: 2624	n:2790000
OR2T5   2790000 perm   3473 sec   (803 perm/sec)   p_kst 9.405018e-04   p_cons 7.071735e-01   p_joint 5.197133e-04

Joint ci ratio: 1.025995e-01	ci left: 4.943324e-04	ci right 5.481379e-04	k: 1458	n:2800000
Cons ci ratio: 1.507448e-03	ci left: 7.066466e-01	ci right 7.077130e-01	k: 1980104	n:2800000
KS ci ratio: 7.628584e-02	ci left: 9.061956e-04	ci right 9.784144e-04	k: 2637	n:2800000
OR2T5   2800000 perm   3497 sec   (801 perm/sec)   p_kst 9.417857e-04   p_cons 7.071800e-01   p_joint 5.207143e-04

Joint ci ratio: 1.024241e-01	ci left: 4.943070e-04	ci right 5.480122e-04	k: 1463	n:2810000
Cons ci ratio: 1.504843e-03	ci left: 7.066255e-01	ci right 7.076900e-01	k: 1987114	n:2810000
KS ci ratio: 7.619928e-02	ci left: 9.050652e-04	ci right 9.771084e-04	k: 2643	n:2810000
OR2T5   2810000 perm   3522 sec   (798 perm/sec)   p_kst 9.405694e-04   p_cons 7.071580e-01   p_joint 5.206406e-04

Joint ci ratio: 1.022497e-01	ci left: 4.942818e-04	ci right 5.478873e-04	k: 1468	n:2820000
Cons ci ratio: 1.502258e-03	ci left: 7.066029e-01	ci right 7.076655e-01	k: 1994119	n:2820000
KS ci ratio: 7.598397e-02	ci left: 9.070737e-04	ci right 9.790638e-04	k: 2658	n:2820000
OR2T5   2820000 perm   3545 sec   (795 perm/sec)   p_kst 9.425532e-04   p_cons 7.071344e-01   p_joint 5.205674e-04

Joint ci ratio: 1.020415e-01	ci left: 4.946012e-04	ci right 5.481256e-04	k: 1474	n:2830000
Cons ci ratio: 1.499518e-03	ci left: 7.066270e-01	ci right 7.076877e-01	k: 2001256	n:2830000
KS ci ratio: 7.584148e-02	ci left: 9.073350e-04	ci right 9.792048e-04	k: 2668	n:2830000
OR2T5   2830000 perm   3570 sec   (793 perm/sec)   p_kst 9.427562e-04   p_cons 7.071576e-01   p_joint 5.208481e-04

Joint ci ratio: 1.019034e-01	ci left: 4.942322e-04	ci right 5.476399e-04	k: 1478	n:2840000
Cons ci ratio: 1.496937e-03	ci left: 7.066108e-01	ci right 7.076697e-01	k: 2008279	n:2840000
KS ci ratio: 7.569979e-02	ci left: 9.075946e-04	ci right 9.793447e-04	k: 2678	n:2840000
OR2T5   2840000 perm   3593 sec   (790 perm/sec)   p_kst 9.429577e-04   p_cons 7.071405e-01   p_joint 5.204225e-04

Joint ci ratio: 1.017659e-01	ci left: 4.938658e-04	ci right 5.471576e-04	k: 1482	n:2850000
Cons ci ratio: 1.494389e-03	ci left: 7.065895e-01	ci right 7.076466e-01	k: 2015287	n:2850000
KS ci ratio: 7.560112e-02	ci left: 9.068197e-04	ci right 9.784110e-04	k: 2685	n:2850000
OR2T5   2850000 perm   3617 sec   (788 perm/sec)   p_kst 9.421053e-04   p_cons 7.071182e-01   p_joint 5.200000e-04

Joint ci ratio: 1.015266e-01	ci left: 4.945243e-04	ci right 5.477542e-04	k: 1489	n:2860000
Cons ci ratio: 1.491777e-03	ci left: 7.065897e-01	ci right 7.076449e-01	k: 2022356	n:2860000
KS ci ratio: 7.547479e-02	ci left: 9.067364e-04	ci right 9.781963e-04	k: 2694	n:2860000
OR2T5   2860000 perm   3641 sec   (786 perm/sec)   p_kst 9.419580e-04   p_cons 7.071175e-01   p_joint 5.206294e-04

Joint ci ratio: 1.012889e-01	ci left: 4.951784e-04	ci right 5.483465e-04	k: 1496	n:2870000
Cons ci ratio: 1.489210e-03	ci left: 7.065811e-01	ci right 7.076345e-01	k: 2029400	n:2870000
KS ci ratio: 7.533514e-02	ci left: 9.069957e-04	ci right 9.783380e-04	k: 2704	n:2870000
OR2T5   2870000 perm   3665 sec   (783 perm/sec)   p_kst 9.421603e-04   p_cons 7.071080e-01   p_joint 5.212544e-04

Joint ci ratio: 1.011876e-01	ci left: 4.944743e-04	ci right 5.475106e-04	k: 1499	n:2880000
Cons ci ratio: 1.486629e-03	ci left: 7.065803e-01	ci right 7.076318e-01	k: 2036466	n:2880000
KS ci ratio: 7.526567e-02	ci left: 9.055498e-04	ci right 9.767098e-04	k: 2709	n:2880000
OR2T5   2880000 perm   3689 sec   (781 perm/sec)   p_kst 9.406250e-04   p_cons 7.071063e-01   p_joint 5.204861e-04

Joint ci ratio: 1.011203e-01	ci left: 4.934379e-04	ci right 5.463256e-04	k: 1501	n:2890000
Cons ci ratio: 1.483944e-03	ci left: 7.066120e-01	ci right 7.076617e-01	k: 2043626	n:2890000
KS ci ratio: 7.515484e-02	ci left: 9.051325e-04	ci right 9.761504e-04	k: 2717	n:2890000
OR2T5   2890000 perm   3712 sec   (778 perm/sec)   p_kst 9.401384e-04   p_cons 7.071370e-01   p_joint 5.193772e-04

Joint ci ratio: 1.008520e-01	ci left: 4.944253e-04	ci right 5.472700e-04	k: 1509	n:2900000
Cons ci ratio: 1.481378e-03	ci left: 7.066145e-01	ci right 7.076623e-01	k: 2050702	n:2900000
KS ci ratio: 7.497570e-02	ci left: 9.064100e-04	ci right 9.773512e-04	k: 2730	n:2900000
OR2T5   2900000 perm   3736 sec   (776 perm/sec)   p_kst 9.413793e-04   p_cons 7.071386e-01   p_joint 5.203448e-04

Joint ci ratio: 1.006522e-01	ci left: 4.947362e-04	ci right 5.475031e-04	k: 1515	n:2910000
Cons ci ratio: 1.478818e-03	ci left: 7.066187e-01	ci right 7.076647e-01	k: 2057783	n:2910000
KS ci ratio: 7.479784e-02	ci left: 9.076789e-04	ci right 9.785436e-04	k: 2743	n:2910000
OR2T5   2910000 perm   3761 sec   (774 perm/sec)   p_kst 9.426117e-04   p_cons 7.071419e-01   p_joint 5.206186e-04

Joint ci ratio: 1.004536e-01	ci left: 4.950450e-04	ci right 5.477346e-04	k: 1521	n:2920000
Cons ci ratio: 1.476295e-03	ci left: 7.066164e-01	ci right 7.076606e-01	k: 2064845	n:2920000
KS ci ratio: 7.468907e-02	ci left: 9.072589e-04	ci right 9.779833e-04	k: 2751	n:2920000
OR2T5   2920000 perm   3785 sec   (772 perm/sec)   p_kst 9.421233e-04   p_cons 7.071387e-01   p_joint 5.208904e-04

Joint ci ratio: 1.002233e-01	ci left: 4.956845e-04	ci right 5.483142e-04	k: 1528	n:2930000
Cons ci ratio: 1.473891e-03	ci left: 7.065843e-01	ci right 7.076269e-01	k: 2071820	n:2930000
KS ci ratio: 7.454022e-02	ci left: 9.078467e-04	ci right 9.784698e-04	k: 2762	n:2930000
OR2T5   2930000 perm   3810 sec   (769 perm/sec)   p_kst 9.426621e-04   p_cons 7.071058e-01   p_joint 5.215017e-04

Joint ci ratio: 1.000925e-01	ci left: 4.953250e-04	ci right 5.478438e-04	k: 1532	n:2940000
Cons ci ratio: 1.471315e-03	ci left: 7.066043e-01	ci right 7.076450e-01	k: 2078947	n:2940000
KS ci ratio: 7.445946e-02	ci left: 9.067616e-04	ci right 9.772205e-04	k: 2768	n:2940000
OR2T5   2940000 perm   3834 sec   (767 perm/sec)   p_kst 9.414966e-04   p_cons 7.071248e-01   p_joint 5.210884e-04

Joint ci ratio: 9.976758e-02	ci left: 4.969511e-04	ci right 5.494612e-04	k: 1542	n:2950000
Cons ci ratio: 1.468829e-03	ci left: 7.066024e-01	ci right 7.076413e-01	k: 2086010	n:2950000
KS ci ratio: 7.428524e-02	ci left: 9.080127e-04	ci right 9.783966e-04	k: 2781	n:2950000
OR2T5   2950000 perm   3859 sec   (764 perm/sec)   p_kst 9.427119e-04   p_cons 7.071220e-01   p_joint 5.227119e-04

Outputting figure to mutsig2_images.part000000000121/OR2T5.2_952_2950000_0.00094271_0.70712_0.00052271.png
                gene_name: OR2T5
               theta_stop: 0.100 
                    nperm: 2950000 
                     p_ks: 0.00094 
        ci_ks_bounds_left: 0.00091 
       ci_ks_bounds_right: 0.00098 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.00052 
     ci_joint_bounds_left: 0.00050 
    ci_joint_bounds_right: 0.00055 

Current progress: 95 percent done.
OR3A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.573437e-02	ci left: 1.654360e-01	ci right 1.803551e-01	k: 1728	n:10000
Cons ci ratio: 9.982218e-02	ci left: 1.268913e-01	ci right 1.403229e-01	k: 1335	n:10000
KS ci ratio: 4.514284e-02	ci left: 4.200689e-01	ci right 4.395720e-01	k: 4298	n:10000
OR3A1   10000 perm   2 sec   (6477 perm/sec)   p_kst 4.298000e-01   p_cons 1.335000e-01   p_joint 1.728000e-01

Outputting figure to mutsig2_images.part000000000121/OR3A1.2_952_10000_0.4298_0.1335_0.1728.png
                gene_name: OR3A1
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 96 percent done.
OR4A47
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.760228e-02	ci left: 6.591754e-01	ci right 6.777264e-01	k: 6685	n:10000
Cons ci ratio: 2.368812e-02	ci left: 7.237072e-01	ci right 7.411572e-01	k: 7325	n:10000
KS ci ratio: 3.105166e-02	ci left: 6.047779e-01	ci right 6.239554e-01	k: 6144	n:10000
OR4A47   10000 perm   2 sec   (6600 perm/sec)   p_kst 6.144000e-01   p_cons 7.325000e-01   p_joint 6.685000e-01

Outputting figure to mutsig2_images.part000000000121/OR4A47.2_932_10000_0.6144_0.7325_0.6685.png
                gene_name: OR4A47
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 97 percent done.
OR4D1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.177263e-01	ci left: 9.389515e-02	ci right 1.057391e-01	k: 997	n:10000
Cons ci ratio: 2.750894e-01	ci left: 1.716007e-02	ci right 2.272454e-02	k: 198	n:10000
KS ci ratio: 6.234863e-02	ci left: 2.743835e-01	ci right 2.921429e-01	k: 2832	n:10000
OR4D1   10000 perm   2 sec   (6646 perm/sec)   p_kst 2.832000e-01   p_cons 1.980000e-02   p_joint 9.970000e-02

Joint ci ratio: 8.242343e-02	ci left: 9.739693e-02	ci right 1.058193e-01	k: 2031	n:20000
Cons ci ratio: 1.945223e-01	ci left: 1.796192e-02	ci right 2.187941e-02	k: 397	n:20000
KS ci ratio: 4.406567e-02	ci left: 2.772109e-01	ci right 2.897521e-01	k: 5669	n:20000
OR4D1   20000 perm   3 sec   (5908 perm/sec)   p_kst 2.834500e-01   p_cons 1.985000e-02   p_joint 1.015500e-01

Joint ci ratio: 6.455117e-02	ci left: 1.059220e-01	ci right 1.130205e-01	k: 3283	n:30000
Cons ci ratio: 1.640943e-01	ci left: 1.713322e-02	ci right 2.022766e-02	k: 559	n:30000
KS ci ratio: 3.592941e-02	ci left: 2.789349e-01	ci right 2.891737e-01	k: 8521	n:30000
OR4D1   30000 perm   5 sec   (5624 perm/sec)   p_kst 2.840333e-01   p_cons 1.863333e-02   p_joint 1.094333e-01

Joint ci ratio: 5.192750e-02	ci left: 1.214525e-01	ci right 1.279521e-01	k: 4987	n:40000
Cons ci ratio: 1.441568e-01	ci left: 1.684024e-02	ci right 1.948037e-02	k: 725	n:40000
KS ci ratio: 3.109606e-02	ci left: 2.798828e-01	ci right 2.887486e-01	k: 11372	n:40000
OR4D1   40000 perm   7 sec   (5432 perm/sec)   p_kst 2.843000e-01   p_cons 1.812500e-02   p_joint 1.246750e-01

Joint ci ratio: 4.627181e-02	ci left: 1.226080e-01	ci right 1.284355e-01	k: 6275	n:50000
Cons ci ratio: 1.293378e-01	ci left: 1.687206e-02	ci right 1.922437e-02	k: 901	n:50000
KS ci ratio: 2.774941e-02	ci left: 2.812848e-01	ci right 2.892201e-01	k: 14262	n:50000
OR4D1   50000 perm   9 sec   (5273 perm/sec)   p_kst 2.852400e-01   p_cons 1.802000e-02   p_joint 1.255000e-01

Joint ci ratio: 4.250591e-02	ci left: 1.215049e-01	ci right 1.267982e-01	k: 7448	n:60000
Cons ci ratio: 1.185382e-01	ci left: 1.683795e-02	ci right 1.897571e-02	k: 1073	n:60000
KS ci ratio: 2.536336e-02	ci left: 2.811245e-01	ci right 2.883630e-01	k: 17084	n:60000
OR4D1   60000 perm   12 sec   (5127 perm/sec)   p_kst 2.847333e-01   p_cons 1.788333e-02   p_joint 1.241333e-01

Joint ci ratio: 3.936967e-02	ci left: 1.216094e-01	ci right 1.265075e-01	k: 8683	n:70000
Cons ci ratio: 1.102389e-01	ci left: 1.676388e-02	ci right 1.873353e-02	k: 1241	n:70000
KS ci ratio: 2.347409e-02	ci left: 2.815296e-01	ci right 2.882311e-01	k: 19941	n:70000
OR4D1   70000 perm   14 sec   (5000 perm/sec)   p_kst 2.848714e-01   p_cons 1.772857e-02   p_joint 1.240429e-01

Joint ci ratio: 3.679223e-02	ci left: 1.219716e-01	ci right 1.265557e-01	k: 9940	n:80000
Cons ci ratio: 1.034322e-01	ci left: 1.672446e-02	ci right 1.856076e-02	k: 1410	n:80000
KS ci ratio: 2.197341e-02	ci left: 2.814624e-01	ci right 2.877282e-01	k: 22767	n:80000
OR4D1   80000 perm   17 sec   (4635 perm/sec)   p_kst 2.845875e-01   p_cons 1.762500e-02   p_joint 1.242500e-01

Joint ci ratio: 3.462203e-02	ci left: 1.225150e-01	ci right 1.268425e-01	k: 11220	n:90000
Cons ci ratio: 9.709358e-02	ci left: 1.692447e-02	ci right 1.866236e-02	k: 1600	n:90000
KS ci ratio: 2.072126e-02	ci left: 2.815538e-01	ci right 2.874601e-01	k: 25605	n:90000
OR4D1   90000 perm   20 sec   (4518 perm/sec)   p_kst 2.845000e-01   p_cons 1.777778e-02   p_joint 1.246667e-01

Outputting figure to mutsig2_images.part000000000121/OR4D1.2_935_90000_0.2845_0.017778_0.12467.png
                gene_name: OR4D1
               theta_stop: 0.097 
                    nperm: 90000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.018 
      ci_cons_bounds_left: 0.017 
     ci_cons_bounds_right: 0.019 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 99 percent done.
OR4K17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.472349e-02	ci left: 7.064443e-01	ci right 7.242301e-01	k: 7154	n:10000
Cons ci ratio: 2.103697e-02	ci left: 7.681038e-01	ci right 7.845349e-01	k: 7764	n:10000
KS ci ratio: 7.944208e-02	ci left: 1.879635e-01	ci right 2.036141e-01	k: 1957	n:10000
OR4K17   10000 perm   2 sec   (5958 perm/sec)   p_kst 1.957000e-01   p_cons 7.764000e-01   p_joint 7.154000e-01

Outputting figure to mutsig2_images.part000000000121/OR4K17.2_1036_10000_0.1957_0.7764_0.7154.png
                gene_name: OR4K17
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.72 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000121
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 121 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1712>
Subject: Job 8004342: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1712>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000122> was used as the working directory.
Started at Sun Nov 11 15:11:13 2012
Results reported at Sun Nov 11 15:24:21 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000122.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000122.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 122  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000122.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    841.92 sec.
    Max Memory :      4723 MB
    Max Swap   :      7045 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
122
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 122
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 122: processing genes 10948 - 11037
Calculating significance of each gene.
Using projection method.
10948	OR4K2	1.036357e-03
10949	OR4K5	4.211101e-01
10950	OR4L1	3.994526e-01
10951	OR4M1	1.281762e-05
10952	OR4M2	6.713784e-09
10953	OR4N2	1.851995e-04
10954	OR4N4	1.290938e-03
10955	OR4N5	1
10956	OR4P4	1
10957	OR4Q3	4.812626e-03
10958	OR4S1	1
10959	OR4S2	1.654699e-03
10960	OR4X1	1
10961	OR4X2	5.119147e-01
10962	OR51A2	1
10963	OR51A4	6.611317e-01
10964	OR51A7	9.793822e-02
10965	OR51B2	1.031839e-06
10966	OR51B4	1.608452e-01
10967	OR51B5	9.165629e-02
10968	OR51B6	1
10969	OR51D1	5.242886e-01
10970	OR51E1	7.244359e-01
10971	OR51E2	5.926097e-02
10972	OR51F1	8.383473e-02
10973	OR51F2	1.802781e-02
10974	OR51G1	1.366172e-01
10975	OR51G2	1
10976	OR51I1	2.153857e-02
10977	OR51I2	6.535822e-01
10978	OR51L1	1.978792e-02
10979	OR51M1	6.812988e-01
10980	OR51Q1	1.439464e-01
10981	OR51S1	1.673618e-02
10982	OR51T1	1
10983	OR51V1	7.381708e-03
10984	OR52A1	4.615686e-01
10985	OR52A4	4.057630e-01
10986	OR52A5	2.864863e-02
10987	OR52B2	1
10988	OR52B4	1.171190e-01
10989	OR52B6	2.647532e-01
10990	OR52D1	1.860633e-01
10991	OR52E2	2.632051e-03
10992	OR52E4	9.813255e-03
10993	OR52E6	4.336409e-02
10994	OR52E8	1.030276e-02
10995	OR52H1	1
10996	OR52I1	4.878203e-01
10997	OR52I2	1
10998	OR52J3	9.979261e-05
10999	OR52K1	1.712473e-01
11000/18094 11000	OR52K2	2.531422e-01
11001	OR52L1	1.710799e-01
11002	OR52M1	1.664932e-01
11003	OR52N1	2.054322e-02
11004	OR52N2	1
11005	OR52N4	7.409511e-02
11006	OR52N5	1
11007	OR52R1	3.264320e-01
11008	OR52W1	1.106429e-01
11009	OR56A1	9.679374e-03
11010	OR56A3	5.444424e-01
11011	OR56A4	2.079612e-02
11012	OR56A5	1
11013	OR56B1	5.516793e-01
11014	OR56B4	1.096490e-02
11015	OR5A1	2.049549e-01
11016	OR5A2	3.248922e-02
11017	OR5AC2	3.176231e-04
11018	OR5AK2	4.544603e-01
11019	OR5AN1	4.353543e-01
11020	OR5AP2	2.978429e-01
11021	OR5AR1	3.446465e-03
11022	OR5AS1	4.347175e-04
11023	OR5AU1	7.941794e-02
11024	OR5B12	9.549536e-02
11025	OR5B17	1.004092e-01
11026	OR5B2	1
11027	OR5B21	1.845306e-02
11028	OR5B3	4.244740e-02
11029	OR5C1	3.282825e-01
11030	OR5D13	4.773190e-01
11031	OR5D14	5.322250e-03
11032	OR5D16	3.843390e-02
11033	OR5D18	4.708567e-01
11034	OR5F1	5.427436e-01
11035	OR5H1	3.103483e-03
11036	OR5H14	1.089503e-02
11037	OR5H15	8.610918e-02
Done

Running MutSig 2:
Scatter job 122: processing genes 10948 - 11037
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
OR4M2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.930025e-02	ci left: 7.969948e-01	ci right 8.126273e-01	k: 8049	n:10000
KS ci ratio: 1.103001e-02	ci left: 9.214164e-01	ci right 9.317334e-01	k: 9267	n:10000
OR4M2   10000 perm   2 sec   (5141 perm/sec)   p_kst 9.267000e-01   p_cons 8.049000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000122/OR4M2.14_946_10000_0.9267_0.8049_1.png
                gene_name: OR4M2
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 1 percent done.
OR5D18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.864254e-02	ci left: 6.424702e-01	ci right 6.612413e-01	k: 6519	n:10000
Cons ci ratio: 6.344096e-02	ci left: 2.674529e-01	ci right 2.850777e-01	k: 2762	n:10000
KS ci ratio: 2.093398e-02	ci left: 7.698255e-01	ci right 7.862122e-01	k: 7781	n:10000
OR5D18   10000 perm   2 sec   (5466 perm/sec)   p_kst 7.781000e-01   p_cons 2.762000e-01   p_joint 6.519000e-01

Outputting figure to mutsig2_images.part000000000122/OR5D18.14_945_10000_0.7781_0.2762_0.6519.png
                gene_name: OR5D18
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 2 percent done.
OR4M1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.008422e-02	ci left: 9.330945e-01	ci right 9.426485e-01	k: 9380	n:10000
Cons ci ratio: 2.439601e-02	ci left: 7.118940e-01	ci right 7.295772e-01	k: 7208	n:10000
KS ci ratio: 1.974146e-02	ci left: 7.896903e-01	ci right 8.055359e-01	k: 7977	n:10000
OR4M1   10000 perm   2 sec   (5121 perm/sec)   p_kst 7.977000e-01   p_cons 7.208000e-01   p_joint 9.380000e-01

Outputting figure to mutsig2_images.part000000000122/OR4M1.13_945_10000_0.7977_0.7208_0.938.png
                gene_name: OR4M1
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 4 percent done.
OR4S2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.513206e-02	ci left: 5.446939e-01	ci right 5.642744e-01	k: 5545	n:10000
Cons ci ratio: 2.353104e-02	ci left: 7.263334e-01	ci right 7.437295e-01	k: 7351	n:10000
KS ci ratio: 4.441376e-02	ci left: 4.280456e-01	ci right 4.475906e-01	k: 4378	n:10000
OR4S2   10000 perm   2 sec   (5555 perm/sec)   p_kst 4.378000e-01   p_cons 7.351000e-01   p_joint 5.545000e-01

Outputting figure to mutsig2_images.part000000000122/OR4S2.12_940_10000_0.4378_0.7351_0.5545.png
                gene_name: OR4S2
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 5 percent done.
OR51B2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.161190e-02	ci left: 4.602776e-01	ci right 4.799398e-01	k: 4701	n:10000
Cons ci ratio: 5.214247e-02	ci left: 3.515781e-01	ci right 3.705029e-01	k: 3610	n:10000
KS ci ratio: 5.063989e-02	ci left: 3.651011e-01	ci right 3.841720e-01	k: 3746	n:10000
OR51B2   10000 perm   2 sec   (5344 perm/sec)   p_kst 3.746000e-01   p_cons 3.610000e-01   p_joint 4.701000e-01

Outputting figure to mutsig2_images.part000000000122/OR51B2.10_943_10000_0.3746_0.361_0.4701.png
                gene_name: OR51B2
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 6 percent done.
OR5B12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.091696e-02	ci left: 4.686667e-01	ci right 4.883458e-01	k: 4785	n:10000
KS ci ratio: 1.152503e-02	ci left: 9.150246e-01	ci right 9.257290e-01	k: 9205	n:10000
OR5B12   10000 perm   2 sec   (5566 perm/sec)   p_kst 9.205000e-01   p_cons 4.785000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000122/OR5B12.10_949_10000_0.9205_0.4785_1.png
                gene_name: OR5B12
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 7 percent done.
OR4N2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.873724e-02	ci left: 6.409613e-01	ci right 6.597510e-01	k: 6504	n:10000
Cons ci ratio: 2.964659e-02	ci left: 6.265817e-01	ci right 6.455390e-01	k: 6361	n:10000
KS ci ratio: 5.559135e-02	ci left: 3.227699e-01	ci right 3.413280e-01	k: 3320	n:10000
OR4N2   10000 perm   2 sec   (5621 perm/sec)   p_kst 3.320000e-01   p_cons 6.361000e-01   p_joint 6.504000e-01

Outputting figure to mutsig2_images.part000000000122/OR4N2.9_927_10000_0.332_0.6361_0.6504.png
                gene_name: OR4N2
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 9 percent done.
OR5F1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.851016e-02	ci left: 6.445828e-01	ci right 6.633275e-01	k: 6540	n:10000
Cons ci ratio: 6.450458e-02	ci left: 2.609207e-01	ci right 2.784136e-01	k: 2696	n:10000
KS ci ratio: 2.154515e-02	ci left: 7.595994e-01	ci right 7.762442e-01	k: 7680	n:10000
OR5F1   10000 perm   2 sec   (5954 perm/sec)   p_kst 7.680000e-01   p_cons 2.696000e-01   p_joint 6.540000e-01

Outputting figure to mutsig2_images.part000000000122/OR5F1.9_948_10000_0.768_0.2696_0.654.png
                gene_name: OR5F1
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 10 percent done.
OR4N4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.943197e-01	ci left: 3.529041e-02	ci right 4.298104e-02	k: 390	n:10000
Cons ci ratio: 1.228697e-02	ci left: 9.048375e-01	ci right 9.161220e-01	k: 9106	n:10000
KS ci ratio: 3.187220e-01	ci left: 1.252543e-02	ci right 1.736316e-02	k: 148	n:10000
OR4N4   10000 perm   2 sec   (5927 perm/sec)   p_kst 1.480000e-02   p_cons 9.106000e-01   p_joint 3.900000e-02

Joint ci ratio: 1.248127e-01	ci left: 4.405941e-02	ci right 4.997318e-02	k: 939	n:20000
Cons ci ratio: 8.576897e-03	ci left: 9.086517e-01	ci right 9.165279e-01	k: 18253	n:20000
KS ci ratio: 2.242329e-01	ci left: 1.336119e-02	ci right 1.678192e-02	k: 300	n:20000
OR4N4   20000 perm   4 sec   (5204 perm/sec)   p_kst 1.500000e-02   p_cons 9.126500e-01   p_joint 4.695000e-02

Joint ci ratio: 1.064664e-01	ci left: 4.092707e-02	ci right 4.556191e-02	k: 1296	n:30000
Cons ci ratio: 6.947557e-03	ci left: 9.106689e-01	ci right 9.170507e-01	k: 27417	n:30000
KS ci ratio: 1.790047e-01	ci left: 1.432368e-02	ci right 1.717122e-02	k: 471	n:30000
OR4N4   30000 perm   6 sec   (4965 perm/sec)   p_kst 1.570000e-02   p_cons 9.139000e-01   p_joint 4.320000e-02

Joint ci ratio: 9.221223e-02	ci left: 4.122835e-02	ci right 4.523830e-02	k: 1728	n:40000
Cons ci ratio: 6.298045e-03	ci left: 9.035289e-01	ci right 9.092620e-01	k: 36257	n:40000
KS ci ratio: 1.555683e-01	ci left: 1.440835e-02	ci right 1.686270e-02	k: 624	n:40000
OR4N4   40000 perm   8 sec   (4812 perm/sec)   p_kst 1.560000e-02   p_cons 9.064250e-01   p_joint 4.320000e-02

Joint ci ratio: 7.413228e-02	ci left: 5.099334e-02	ci right 5.493876e-02	k: 2647	n:50000
Cons ci ratio: 5.615271e-03	ci left: 9.043801e-01	ci right 9.094925e-01	k: 45348	n:50000
KS ci ratio: 1.362716e-01	ci left: 1.516958e-02	ci right 1.740709e-02	k: 813	n:50000
OR4N4   50000 perm   11 sec   (4692 perm/sec)   p_kst 1.626000e-02   p_cons 9.069600e-01   p_joint 5.294000e-02

Joint ci ratio: 6.639876e-02	ci left: 5.307420e-02	ci right 5.673567e-02	k: 3293	n:60000
Cons ci ratio: 5.113602e-03	ci left: 9.050188e-01	ci right 9.096750e-01	k: 54442	n:60000
KS ci ratio: 1.196779e-01	ci left: 1.651438e-02	ci right 1.863265e-02	k: 1053	n:60000
OR4N4   60000 perm   13 sec   (4587 perm/sec)   p_kst 1.755000e-02   p_cons 9.073667e-01   p_joint 5.488333e-02

Joint ci ratio: 6.252170e-02	ci left: 5.150659e-02	ci right 5.484485e-02	k: 3721	n:70000
Cons ci ratio: 4.719608e-03	ci left: 9.057193e-01	ci right 9.100182e-01	k: 63552	n:70000
KS ci ratio: 1.107392e-01	ci left: 1.661101e-02	ci right 1.857213e-02	k: 1230	n:70000
OR4N4   70000 perm   16 sec   (4494 perm/sec)   p_kst 1.757143e-02   p_cons 9.078857e-01   p_joint 5.315714e-02

Joint ci ratio: 6.012665e-02	ci left: 4.893108e-02	ci right 5.197663e-02	k: 4035	n:80000
Cons ci ratio: 4.423946e-03	ci left: 9.055091e-01	ci right 9.095363e-01	k: 72603	n:80000
KS ci ratio: 1.066310e-01	ci left: 1.572595e-02	ci right 1.750936e-02	k: 1328	n:80000
OR4N4   80000 perm   18 sec   (4407 perm/sec)   p_kst 1.660000e-02   p_cons 9.075375e-01   p_joint 5.043750e-02

Joint ci ratio: 5.717702e-02	ci left: 4.821243e-02	ci right 5.106113e-02	k: 4466	n:90000
Cons ci ratio: 4.190044e-03	ci left: 9.048484e-01	ci right 9.086587e-01	k: 81609	n:90000
KS ci ratio: 1.007084e-01	ci left: 1.572114e-02	ci right 1.739911e-02	k: 1489	n:90000
OR4N4   90000 perm   21 sec   (4334 perm/sec)   p_kst 1.654444e-02   p_cons 9.067667e-01   p_joint 4.962222e-02

Joint ci ratio: 5.082305e-02	ci left: 5.472117e-02	ci right 5.758464e-02	k: 5614	n:100000
Cons ci ratio: 3.967641e-03	ci left: 9.052638e-01	ci right 9.088726e-01	k: 90708	n:100000
KS ci ratio: 9.523538e-02	ci left: 1.586598e-02	ci right 1.746224e-02	k: 1665	n:100000
OR4N4   100000 perm   23 sec   (4257 perm/sec)   p_kst 1.665000e-02   p_cons 9.070800e-01   p_joint 5.614000e-02

Outputting figure to mutsig2_images.part000000000122/OR4N4.8_954_100000_0.01665_0.90708_0.05614.png
                gene_name: OR4N4
               theta_stop: 0.095 
                    nperm: 100000 
                     p_ks: 0.017 
        ci_ks_bounds_left: 0.016 
       ci_ks_bounds_right: 0.017 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.056 
     ci_joint_bounds_left: 0.055 
    ci_joint_bounds_right: 0.058 

Current progress: 11 percent done.
OR4P4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.296881e-01	ci left: 2.504340e-02	ci right 3.163520e-02	k: 282	n:10000
Cons ci ratio: 3.541838e-01	ci left: 9.958933e-03	ci right 1.433217e-02	k: 120	n:10000
KS ci ratio: 7.750296e-02	ci left: 1.957449e-01	ci right 2.116281e-01	k: 2036	n:10000
OR4P4   10000 perm   2 sec   (5468 perm/sec)   p_kst 2.036000e-01   p_cons 1.200000e-02   p_joint 2.820000e-02

Joint ci ratio: 1.418062e-01	ci left: 3.418499e-02	ci right 3.945078e-02	k: 735	n:20000
Cons ci ratio: 2.453702e-01	ci left: 1.105337e-02	ci right 1.419071e-02	k: 251	n:20000
KS ci ratio: 5.517796e-02	ci left: 1.959101e-01	ci right 2.070768e-01	k: 4029	n:20000
OR4P4   20000 perm   4 sec   (4920 perm/sec)   p_kst 2.014500e-01   p_cons 1.255000e-02   p_joint 3.675000e-02

Joint ci ratio: 1.363805e-01	ci left: 2.496955e-02	ci right 2.865619e-02	k: 803	n:30000
Cons ci ratio: 2.003455e-01	ci left: 1.133685e-02	ci right 1.389217e-02	k: 377	n:30000
KS ci ratio: 4.552008e-02	ci left: 1.936687e-01	ci right 2.027232e-01	k: 5945	n:30000
OR4P4   30000 perm   6 sec   (4676 perm/sec)   p_kst 1.981667e-01   p_cons 1.256667e-02   p_joint 2.676667e-02

Joint ci ratio: 1.345617e-01	ci left: 1.937545e-02	ci right 2.219473e-02	k: 830	n:40000
Cons ci ratio: 1.714496e-01	ci left: 1.179319e-02	ci right 1.402836e-02	k: 515	n:40000
KS ci ratio: 3.959925e-02	ci left: 1.928638e-01	ci right 2.006803e-01	k: 7870	n:40000
OR4P4   40000 perm   9 sec   (4533 perm/sec)   p_kst 1.967500e-01   p_cons 1.287500e-02   p_joint 2.075000e-02

Joint ci ratio: 1.090765e-01	ci left: 2.380489e-02	ci right 2.657061e-02	k: 1258	n:50000
Cons ci ratio: 1.535910e-01	ci left: 1.187154e-02	ci right 1.386561e-02	k: 642	n:50000
KS ci ratio: 3.537114e-02	ci left: 1.937002e-01	ci right 2.006950e-01	k: 9859	n:50000
OR4P4   50000 perm   11 sec   (4421 perm/sec)   p_kst 1.971800e-01   p_cons 1.284000e-02   p_joint 2.516000e-02

Joint ci ratio: 8.359826e-02	ci left: 3.387026e-02	ci right 3.684157e-02	k: 2120	n:60000
Cons ci ratio: 1.439002e-01	ci left: 1.133693e-02	ci right 1.311072e-02	k: 732	n:60000
KS ci ratio: 3.228931e-02	ci left: 1.940061e-01	ci right 2.003899e-01	k: 11831	n:60000
OR4P4   60000 perm   14 sec   (4310 perm/sec)   p_kst 1.971833e-01   p_cons 1.220000e-02   p_joint 3.533333e-02

Joint ci ratio: 7.387118e-02	ci left: 3.724107e-02	ci right 4.011162e-02	k: 2706	n:70000
Cons ci ratio: 1.336351e-01	ci left: 1.133082e-02	ci right 1.296713e-02	k: 849	n:70000
KS ci ratio: 2.981209e-02	ci left: 1.951102e-01	ci right 2.010291e-01	k: 13864	n:70000
OR4P4   70000 perm   17 sec   (4083 perm/sec)   p_kst 1.980571e-01   p_cons 1.212857e-02   p_joint 3.865714e-02

Joint ci ratio: 7.434144e-02	ci left: 3.233746e-02	ci right 3.484652e-02	k: 2686	n:80000
Cons ci ratio: 1.253594e-01	ci left: 1.131752e-02	ci right 1.284317e-02	k: 965	n:80000
KS ci ratio: 2.784801e-02	ci left: 1.957407e-01	ci right 2.012811e-01	k: 15880	n:80000
OR4P4   80000 perm   21 sec   (3898 perm/sec)   p_kst 1.985000e-01   p_cons 1.206250e-02   p_joint 3.357500e-02

Joint ci ratio: 8.110315e-02	ci left: 2.427293e-02	ci right 2.633560e-02	k: 2276	n:90000
Cons ci ratio: 1.180664e-01	ci left: 1.138512e-02	ci right 1.282436e-02	k: 1088	n:90000
KS ci ratio: 2.624815e-02	ci left: 1.959867e-01	ci right 2.012105e-01	k: 17873	n:90000
OR4P4   90000 perm   23 sec   (3869 perm/sec)   p_kst 1.985889e-01   p_cons 1.208889e-02   p_joint 2.528889e-02

Joint ci ratio: 7.431572e-02	ci left: 2.606307e-02	ci right 2.808449e-02	k: 2706	n:100000
Cons ci ratio: 1.117741e-01	ci left: 1.147044e-02	ci right 1.283808e-02	k: 1214	n:100000
KS ci ratio: 2.487384e-02	ci left: 1.964695e-01	ci right 2.014280e-01	k: 19894	n:100000
OR4P4   100000 perm   26 sec   (3835 perm/sec)   p_kst 1.989400e-01   p_cons 1.214000e-02   p_joint 2.706000e-02

Joint ci ratio: 7.215923e-02	ci left: 2.518366e-02	ci right 2.707780e-02	k: 2873	n:110000
Cons ci ratio: 1.058730e-01	ci left: 1.165698e-02	ci right 1.296892e-02	k: 1353	n:110000
KS ci ratio: 2.375660e-02	ci left: 1.960467e-01	ci right 2.007692e-01	k: 21824	n:110000
OR4P4   110000 perm   29 sec   (3797 perm/sec)   p_kst 1.984000e-01   p_cons 1.230000e-02   p_joint 2.611818e-02

Joint ci ratio: 7.896072e-02	ci left: 1.932974e-02	ci right 2.092690e-02	k: 2414	n:120000
Cons ci ratio: 1.014733e-01	ci left: 1.165964e-02	ci right 1.291409e-02	k: 1473	n:120000
KS ci ratio: 2.329598e-02	ci left: 1.886797e-01	ci right 1.931353e-01	k: 22908	n:120000
OR4P4   120000 perm   32 sec   (3757 perm/sec)   p_kst 1.909000e-01   p_cons 1.227500e-02   p_joint 2.011667e-02

Joint ci ratio: 7.703181e-02	ci left: 1.877787e-02	ci right 2.028982e-02	k: 2538	n:130000
Cons ci ratio: 9.823733e-02	ci left: 1.150522e-02	ci right 1.270130e-02	k: 1572	n:130000
KS ci ratio: 2.240665e-02	ci left: 1.884297e-01	ci right 1.927072e-01	k: 24773	n:130000
OR4P4   130000 perm   35 sec   (3718 perm/sec)   p_kst 1.905615e-01   p_cons 1.209231e-02   p_joint 1.952308e-02

Outputting figure to mutsig2_images.part000000000122/OR4P4.8_942_130000_0.19056_0.012092_0.019523.png
                gene_name: OR4P4
               theta_stop: 0.098 
                    nperm: 130000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.012 
      ci_cons_bounds_left: 0.012 
     ci_cons_bounds_right: 0.013 
                  p_joint: 0.020 
     ci_joint_bounds_left: 0.019 
    ci_joint_bounds_right: 0.020 

Current progress: 12 percent done.
OR52J3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.361654e-02	ci left: 2.127026e-01	ci right 2.290604e-01	k: 2208	n:10000
Cons ci ratio: 3.250553e-02	ci left: 5.827935e-01	ci right 6.021526e-01	k: 5925	n:10000
KS ci ratio: 1.077377e-01	ci left: 1.105672e-01	ci right 1.232569e-01	k: 1168	n:10000
OR52J3   10000 perm   2 sec   (5772 perm/sec)   p_kst 1.168000e-01   p_cons 5.925000e-01   p_joint 2.208000e-01

Joint ci ratio: 5.071637e-02	ci left: 2.241327e-01	ci right 2.358459e-01	k: 4599	n:20000
Cons ci ratio: 2.342914e-02	ci left: 5.763805e-01	ci right 5.900953e-01	k: 11665	n:20000
KS ci ratio: 7.455001e-02	ci left: 1.169040e-01	ci right 1.260064e-01	k: 2428	n:20000
OR52J3   20000 perm   4 sec   (5009 perm/sec)   p_kst 1.214000e-01   p_cons 5.832500e-01   p_joint 2.299500e-01

Outputting figure to mutsig2_images.part000000000122/OR52J3.8_931_20000_0.1214_0.58325_0.22995.png
                gene_name: OR52J3
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 14 percent done.
OR5D16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.225711e-02	ci left: 5.865064e-01	ci right 6.058375e-01	k: 5962	n:10000
Cons ci ratio: 3.239124e-02	ci left: 5.844994e-01	ci right 6.038457e-01	k: 5942	n:10000
KS ci ratio: 4.234563e-02	ci left: 4.515919e-01	ci right 4.712306e-01	k: 4614	n:10000
OR5D16   10000 perm   2 sec   (5359 perm/sec)   p_kst 4.614000e-01   p_cons 5.942000e-01   p_joint 5.962000e-01

Outputting figure to mutsig2_images.part000000000122/OR5D16.8_989_10000_0.4614_0.5942_0.5962.png
                gene_name: OR5D16
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 15 percent done.
OR5H14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.567934e-02	ci left: 6.906085e-01	ci right 7.086750e-01	k: 6997	n:10000
Cons ci ratio: 6.884996e-02	ci left: 2.362992e-01	ci right 2.532497e-01	k: 2447	n:10000
KS ci ratio: 1.101379e-02	ci left: 9.216228e-01	ci right 9.319269e-01	k: 9269	n:10000
OR5H14   10000 perm   2 sec   (6128 perm/sec)   p_kst 9.269000e-01   p_cons 2.447000e-01   p_joint 6.997000e-01

Outputting figure to mutsig2_images.part000000000122/OR5H14.8_937_10000_0.9269_0.2447_0.6997.png
                gene_name: OR5H14
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 16 percent done.
OR4K5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.251018e-01	ci left: 8.378084e-02	ci right 9.505967e-02	k: 893	n:10000
Cons ci ratio: 7.076461e-02	ci left: 2.264216e-01	ci right 2.431331e-01	k: 2347	n:10000
KS ci ratio: 1.714031e-01	ci left: 4.542628e-02	ci right 5.403844e-02	k: 496	n:10000
OR4K5   10000 perm   2 sec   (5601 perm/sec)   p_kst 4.960000e-02   p_cons 2.347000e-01   p_joint 8.930000e-02

Joint ci ratio: 9.569699e-02	ci left: 7.368425e-02	ci right 8.113917e-02	k: 1547	n:20000
Cons ci ratio: 5.038926e-02	ci left: 2.264120e-01	ci right 2.381659e-01	k: 4645	n:20000
KS ci ratio: 1.201260e-01	ci left: 4.750575e-02	ci right 5.362575e-02	k: 1010	n:20000
OR4K5   20000 perm   4 sec   (5010 perm/sec)   p_kst 5.050000e-02   p_cons 2.322500e-01   p_joint 7.735000e-02

Joint ci ratio: 8.425248e-02	ci left: 6.445757e-02	ci right 7.015990e-02	k: 2018	n:30000
Cons ci ratio: 4.128944e-02	ci left: 2.262402e-01	ci right 2.358119e-01	k: 6930	n:30000
KS ci ratio: 9.682870e-02	ci left: 4.928641e-02	ci right 5.433417e-02	k: 1553	n:30000
OR4K5   30000 perm   6 sec   (4789 perm/sec)   p_kst 5.176667e-02   p_cons 2.310000e-01   p_joint 6.726667e-02

Outputting figure to mutsig2_images.part000000000122/OR4K5.7_974_30000_0.051767_0.231_0.067267.png
                gene_name: OR4K5
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.052 
        ci_ks_bounds_left: 0.049 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.067 
     ci_joint_bounds_left: 0.064 
    ci_joint_bounds_right: 0.070 

Current progress: 17 percent done.
OR4Q3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.561814e-02	ci left: 5.378822e-01	ci right 5.574900e-01	k: 5477	n:10000
Cons ci ratio: 4.118018e-02	ci left: 4.654705e-01	ci right 4.851439e-01	k: 4753	n:10000
KS ci ratio: 5.987856e-02	ci left: 2.909285e-01	ci right 3.089882e-01	k: 2999	n:10000
OR4Q3   10000 perm   2 sec   (5454 perm/sec)   p_kst 2.999000e-01   p_cons 4.753000e-01   p_joint 5.477000e-01

Outputting figure to mutsig2_images.part000000000122/OR4Q3.7_944_10000_0.2999_0.4753_0.5477.png
                gene_name: OR4Q3
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 19 percent done.
OR52E2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.273525e-02	ci left: 3.464097e-01	ci right 3.652744e-01	k: 3558	n:10000
Cons ci ratio: 2.155724e-02	ci left: 7.593970e-01	ci right 7.760468e-01	k: 7678	n:10000
KS ci ratio: 8.083070e-02	ci left: 1.826474e-01	ci right 1.981334e-01	k: 1903	n:10000
OR52E2   10000 perm   2 sec   (5484 perm/sec)   p_kst 1.903000e-01   p_cons 7.678000e-01   p_joint 3.558000e-01

Outputting figure to mutsig2_images.part000000000122/OR52E2.7_981_10000_0.1903_0.7678_0.3558.png
                gene_name: OR52E2
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 20 percent done.
OR56A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.156329e-02	ci left: 7.592958e-01	ci right 7.759480e-01	k: 7677	n:10000
Cons ci ratio: 1.036694e-02	ci left: 9.296799e-01	ci right 9.394650e-01	k: 9347	n:10000
KS ci ratio: 3.098618e-02	ci left: 6.057823e-01	ci right 6.249505e-01	k: 6154	n:10000
OR56A1   10000 perm   2 sec   (6190 perm/sec)   p_kst 6.154000e-01   p_cons 9.347000e-01   p_joint 7.677000e-01

Outputting figure to mutsig2_images.part000000000122/OR56A1.7_961_10000_0.6154_0.9347_0.7677.png
                gene_name: OR56A1
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 21 percent done.
OR56A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.038774e-02	ci left: 1.843208e-01	ci right 1.998590e-01	k: 1920	n:10000
Cons ci ratio: 5.206347e-02	ci left: 3.522739e-01	ci right 3.712067e-01	k: 3617	n:10000
KS ci ratio: 7.767058e-02	ci left: 1.950552e-01	ci right 2.109182e-01	k: 2029	n:10000
OR56A4   10000 perm   2 sec   (5361 perm/sec)   p_kst 2.029000e-01   p_cons 3.617000e-01   p_joint 1.920000e-01

Outputting figure to mutsig2_images.part000000000122/OR56A4.7_1100_10000_0.2029_0.3617_0.192.png
                gene_name: OR56A4
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 22 percent done.
OR5AC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.478182e-01	ci left: 6.082454e-02	ci right 7.063030e-02	k: 656	n:10000
Cons ci ratio: 2.499682e-01	ci left: 2.099569e-02	ci right 2.708592e-02	k: 239	n:10000
KS ci ratio: 5.057512e-02	ci left: 3.656978e-01	ci right 3.847749e-01	k: 3752	n:10000
OR5AC2   10000 perm   2 sec   (5568 perm/sec)   p_kst 3.752000e-01   p_cons 2.390000e-02   p_joint 6.560000e-02

Joint ci ratio: 8.851651e-02	ci left: 8.533364e-02	ci right 9.328623e-02	k: 1785	n:20000
Cons ci ratio: 1.794582e-01	ci left: 2.120602e-02	ci right 2.543413e-02	k: 465	n:20000
KS ci ratio: 3.543989e-02	ci left: 3.727676e-01	ci right 3.862674e-01	k: 7590	n:20000
OR5AC2   20000 perm   4 sec   (4971 perm/sec)   p_kst 3.795000e-01   p_cons 2.325000e-02   p_joint 8.925000e-02

Joint ci ratio: 6.992033e-02	ci left: 9.150783e-02	ci right 9.817087e-02	k: 2844	n:30000
Cons ci ratio: 1.459945e-01	ci left: 2.175113e-02	ci right 2.520867e-02	k: 703	n:30000
KS ci ratio: 2.897442e-02	ci left: 3.734058e-01	ci right 3.844177e-01	k: 11367	n:30000
OR5AC2   30000 perm   6 sec   (4744 perm/sec)   p_kst 3.789000e-01   p_cons 2.343333e-02   p_joint 9.480000e-02

Joint ci ratio: 7.686520e-02	ci left: 5.869859e-02	ci right 6.341539e-02	k: 2441	n:40000
Cons ci ratio: 1.277422e-01	ci left: 2.152896e-02	ci right 2.449084e-02	k: 919	n:40000
KS ci ratio: 2.523621e-02	ci left: 3.714742e-01	ci right 3.809937e-01	k: 15049	n:40000
OR5AC2   40000 perm   9 sec   (4600 perm/sec)   p_kst 3.762250e-01   p_cons 2.297500e-02   p_joint 6.102500e-02

Joint ci ratio: 5.150565e-02	ci left: 1.011397e-01	ci right 1.065064e-01	k: 5190	n:50000
Cons ci ratio: 1.139524e-01	ci left: 2.180102e-02	ci right 2.445474e-02	k: 1155	n:50000
KS ci ratio: 2.254264e-02	ci left: 3.725897e-01	ci right 3.811046e-01	k: 18842	n:50000
OR5AC2   50000 perm   11 sec   (4484 perm/sec)   p_kst 3.768400e-01   p_cons 2.310000e-02   p_joint 1.038000e-01

Joint ci ratio: 5.080435e-02	ci left: 8.796877e-02	ci right 9.257095e-02	k: 5415	n:60000
Cons ci ratio: 1.037640e-01	ci left: 2.202648e-02	ci right 2.445327e-02	k: 1393	n:60000
KS ci ratio: 2.058406e-02	ci left: 3.728371e-01	ci right 3.806081e-01	k: 22603	n:60000
OR5AC2   60000 perm   14 sec   (4385 perm/sec)   p_kst 3.767167e-01   p_cons 2.321667e-02   p_joint 9.025000e-02

Joint ci ratio: 5.845164e-02	ci left: 5.860406e-02	ci right 6.214677e-02	k: 4225	n:70000
Cons ci ratio: 9.842643e-02	ci left: 2.106549e-02	ci right 2.326008e-02	k: 1550	n:70000
KS ci ratio: 1.902838e-02	ci left: 3.738356e-01	ci right 3.810317e-01	k: 26420	n:70000
OR5AC2   70000 perm   16 sec   (4299 perm/sec)   p_kst 3.774286e-01   p_cons 2.214286e-02   p_joint 6.035714e-02

Outputting figure to mutsig2_images.part000000000122/OR5AC2.7_932_70000_0.37743_0.022143_0.060357.png
                gene_name: OR5AC2
               theta_stop: 0.098 
                    nperm: 70000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.022 
      ci_cons_bounds_left: 0.021 
     ci_cons_bounds_right: 0.023 
                  p_joint: 0.060 
     ci_joint_bounds_left: 0.059 
    ci_joint_bounds_right: 0.062 

Current progress: 23 percent done.
OR5AS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.395808e-01	ci left: 6.797633e-02	ci right 7.827401e-02	k: 730	n:10000
Cons ci ratio: 1.814227e-01	ci left: 4.054168e-02	ci right 4.872625e-02	k: 445	n:10000
KS ci ratio: 6.392025e-02	ci left: 2.644834e-01	ci right 2.820489e-01	k: 2732	n:10000
OR5AS1   10000 perm   2 sec   (5228 perm/sec)   p_kst 2.732000e-01   p_cons 4.450000e-02   p_joint 7.300000e-02

Joint ci ratio: 9.519797e-02	ci left: 7.441774e-02	ci right 8.190544e-02	k: 1562	n:20000
Cons ci ratio: 1.302882e-01	ci left: 4.047238e-02	ci right 4.616135e-02	k: 865	n:20000
KS ci ratio: 4.522149e-02	ci left: 2.668838e-01	ci right 2.792823e-01	k: 5461	n:20000
OR5AS1   20000 perm   4 sec   (4706 perm/sec)   p_kst 2.730500e-01   p_cons 4.325000e-02   p_joint 7.810000e-02

Joint ci ratio: 5.938164e-02	ci left: 1.230543e-01	ci right 1.306182e-01	k: 3804	n:30000
Cons ci ratio: 9.729176e-02	ci left: 4.883050e-02	ci right 5.385684e-02	k: 1539	n:30000
KS ci ratio: 3.682433e-02	ci left: 2.690910e-01	ci right 2.792194e-01	k: 8224	n:30000
OR5AS1   30000 perm   7 sec   (4512 perm/sec)   p_kst 2.741333e-01   p_cons 5.130000e-02   p_joint 1.268000e-01

Outputting figure to mutsig2_images.part000000000122/OR5AS1.7_977_30000_0.27413_0.0513_0.1268.png
                gene_name: OR5AS1
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.051 
      ci_cons_bounds_left: 0.049 
     ci_cons_bounds_right: 0.054 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 25 percent done.
OR5B2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.095758e-01	ci left: 3.024949e-02	ci right 3.742541e-02	k: 337	n:10000
Cons ci ratio: 2.418322e-01	ci left: 2.249916e-02	ci right 2.878131e-02	k: 255	n:10000
KS ci ratio: 4.567166e-02	ci left: 4.143870e-01	ci right 4.338572e-01	k: 4241	n:10000
OR5B2   10000 perm   2 sec   (5568 perm/sec)   p_kst 4.241000e-01   p_cons 2.550000e-02   p_joint 3.370000e-02

Joint ci ratio: 8.786976e-02	ci left: 8.650961e-02	ci right 9.450990e-02	k: 1809	n:20000
Cons ci ratio: 1.639141e-01	ci left: 2.551743e-02	ci right 3.012122e-02	k: 555	n:20000
KS ci ratio: 3.237050e-02	ci left: 4.161398e-01	ci right 4.298826e-01	k: 8460	n:20000
OR5B2   20000 perm   4 sec   (5012 perm/sec)   p_kst 4.230000e-01   p_cons 2.775000e-02   p_joint 9.045000e-02

Joint ci ratio: 8.266141e-02	ci left: 6.684362e-02	ci right 7.264003e-02	k: 2091	n:30000
Cons ci ratio: 1.417235e-01	ci left: 2.310186e-02	ci right 2.665763e-02	k: 745	n:30000
KS ci ratio: 2.637533e-02	ci left: 4.184320e-01	ci right 4.296494e-01	k: 12721	n:30000
OR5B2   30000 perm   6 sec   (4788 perm/sec)   p_kst 4.240333e-01   p_cons 2.483333e-02   p_joint 6.970000e-02

Joint ci ratio: 7.311075e-02	ci left: 6.459340e-02	ci right 6.951968e-02	k: 2681	n:40000
Cons ci ratio: 1.225262e-01	ci left: 2.341930e-02	ci right 2.650019e-02	k: 997	n:40000
KS ci ratio: 2.284946e-02	ci left: 4.190254e-01	ci right 4.287357e-01	k: 16955	n:40000
OR5B2   40000 perm   9 sec   (4621 perm/sec)   p_kst 4.238750e-01   p_cons 2.492500e-02   p_joint 6.702500e-02

Joint ci ratio: 6.609781e-02	ci left: 6.354361e-02	ci right 6.790697e-02	k: 3285	n:50000
Cons ci ratio: 1.087227e-01	ci left: 2.396064e-02	ci right 2.673484e-02	k: 1266	n:50000
KS ci ratio: 2.044217e-02	ci left: 4.194232e-01	ci right 4.281057e-01	k: 21188	n:50000
OR5B2   50000 perm   11 sec   (4502 perm/sec)   p_kst 4.237600e-01   p_cons 2.532000e-02   p_joint 6.570000e-02

Joint ci ratio: 5.865455e-02	ci left: 6.724756e-02	ci right 7.132755e-02	k: 4156	n:60000
Cons ci ratio: 9.876448e-02	ci left: 2.431837e-02	ci right 2.686113e-02	k: 1534	n:60000
KS ci ratio: 1.861070e-02	ci left: 4.211231e-01	ci right 4.290508e-01	k: 25505	n:60000
OR5B2   60000 perm   14 sec   (4402 perm/sec)   p_kst 4.250833e-01   p_cons 2.556667e-02   p_joint 6.926667e-02

Outputting figure to mutsig2_images.part000000000122/OR5B2.7_934_60000_0.42508_0.025567_0.069267.png
                gene_name: OR5B2
               theta_stop: 0.099 
                    nperm: 60000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.026 
      ci_cons_bounds_left: 0.024 
     ci_cons_bounds_right: 0.027 
                  p_joint: 0.069 
     ci_joint_bounds_left: 0.067 
    ci_joint_bounds_right: 0.071 

Current progress: 26 percent done.
OR5D14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.416248e-02	ci left: 1.407013e-01	ci right 1.547046e-01	k: 1476	n:10000
Cons ci ratio: 2.028398e-01	ci left: 3.233938e-02	ci right 3.973408e-02	k: 359	n:10000
KS ci ratio: 1.600187e-02	ci left: 8.501887e-01	ci right 8.640026e-01	k: 8572	n:10000
OR5D14   10000 perm   2 sec   (5627 perm/sec)   p_kst 8.572000e-01   p_cons 3.590000e-02   p_joint 1.476000e-01

Joint ci ratio: 7.375725e-02	ci left: 1.191670e-01	ci right 1.283427e-01	k: 2474	n:20000
Cons ci ratio: 1.560097e-01	ci left: 2.820837e-02	ci right 3.302937e-02	k: 611	n:20000
KS ci ratio: 1.150528e-02	ci left: 8.480668e-01	ci right 8.579303e-01	k: 17061	n:20000
OR5D14   20000 perm   4 sec   (5045 perm/sec)   p_kst 8.530500e-01   p_cons 3.055000e-02   p_joint 1.237000e-01

Joint ci ratio: 6.707863e-02	ci left: 9.876144e-02	ci right 1.056492e-01	k: 3065	n:30000
Cons ci ratio: 1.286897e-01	ci left: 2.806632e-02	ci right 3.195873e-02	k: 899	n:30000
KS ci ratio: 9.642857e-03	ci left: 8.422360e-01	ci right 8.504301e-01	k: 25391	n:30000
OR5D14   30000 perm   6 sec   (4804 perm/sec)   p_kst 8.463667e-01   p_cons 2.996667e-02   p_joint 1.021667e-01

Joint ci ratio: 5.215472e-02	ci left: 1.205131e-01	ci right 1.269916e-01	k: 4949	n:40000
Cons ci ratio: 1.105500e-01	ci left: 2.878783e-02	ci right 3.218078e-02	k: 1218	n:40000
KS ci ratio: 8.328928e-03	ci left: 8.434850e-01	ci right 8.505646e-01	k: 33882	n:40000
OR5D14   40000 perm   9 sec   (4649 perm/sec)   p_kst 8.470500e-01   p_cons 3.045000e-02   p_joint 1.237250e-01

Joint ci ratio: 4.420113e-02	ci left: 1.329075e-01	ci right 1.389348e-01	k: 6795	n:50000
Cons ci ratio: 9.810975e-02	ci left: 2.942001e-02	ci right 3.247477e-02	k: 1546	n:50000
KS ci ratio: 7.603345e-03	ci left: 8.384505e-01	ci right 8.448698e-01	k: 42084	n:50000
OR5D14   50000 perm   11 sec   (4532 perm/sec)   p_kst 8.416800e-01   p_cons 3.092000e-02   p_joint 1.359000e-01

Outputting figure to mutsig2_images.part000000000122/OR5D14.7_948_50000_0.84168_0.03092_0.1359.png
                gene_name: OR5D14
               theta_stop: 0.098 
                    nperm: 50000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.031 
      ci_cons_bounds_left: 0.029 
     ci_cons_bounds_right: 0.032 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 27 percent done.
OR4K2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.048147e-01	ci left: 1.162323e-01	ci right 1.291883e-01	k: 1226	n:10000
Cons ci ratio: 1.269727e-02	ci left: 8.991872e-01	ci right 9.107756e-01	k: 9051	n:10000
KS ci ratio: 1.741871e-01	ci left: 4.398826e-02	ci right 5.247740e-02	k: 481	n:10000
OR4K2   10000 perm   2 sec   (6290 perm/sec)   p_kst 4.810000e-02   p_cons 9.051000e-01   p_joint 1.226000e-01

Joint ci ratio: 5.698118e-02	ci left: 1.858691e-01	ci right 1.968208e-01	k: 3826	n:20000
Cons ci ratio: 9.366105e-03	ci left: 8.932644e-01	ci right 9.017196e-01	k: 17951	n:20000
KS ci ratio: 1.260130e-01	ci left: 4.323490e-02	ci right 4.909795e-02	k: 922	n:20000
OR4K2   20000 perm   4 sec   (5536 perm/sec)   p_kst 4.610000e-02   p_cons 8.975500e-01   p_joint 1.913000e-01

Joint ci ratio: 5.368532e-02	ci left: 1.468338e-01	ci right 1.549673e-01	k: 4526	n:30000
Cons ci ratio: 7.626926e-03	ci left: 8.945538e-01	ci right 9.014356e-01	k: 26941	n:30000
KS ci ratio: 9.906753e-02	ci left: 4.713763e-02	ci right 5.208339e-02	k: 1487	n:30000
OR4K2   30000 perm   6 sec   (5250 perm/sec)   p_kst 4.956667e-02   p_cons 8.980333e-01   p_joint 1.508667e-01

Outputting figure to mutsig2_images.part000000000122/OR4K2.6_949_30000_0.049567_0.89803_0.15087.png
                gene_name: OR4K2
               theta_stop: 0.099 
                    nperm: 30000 
                     p_ks: 0.050 
        ci_ks_bounds_left: 0.047 
       ci_ks_bounds_right: 0.052 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.15 

Current progress: 28 percent done.
OR51I1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.861100e-02	ci left: 6.429732e-01	ci right 6.617380e-01	k: 6524	n:10000
Cons ci ratio: 6.665108e-02	ci left: 2.483582e-01	ci right 2.655836e-01	k: 2569	n:10000
KS ci ratio: 1.624928e-02	ci left: 8.463146e-01	ci right 8.602789e-01	k: 8534	n:10000
OR51I1   10000 perm   2 sec   (6056 perm/sec)   p_kst 8.534000e-01   p_cons 2.569000e-01   p_joint 6.524000e-01

Outputting figure to mutsig2_images.part000000000122/OR51I1.6_949_10000_0.8534_0.2569_0.6524.png
                gene_name: OR51I1
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 30 percent done.
OR51L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.081627e-02	ci left: 6.083937e-01	ci right 6.275375e-01	k: 6180	n:10000
KS ci ratio: 1.631413e-02	ci left: 8.452954e-01	ci right 8.592987e-01	k: 8524	n:10000
OR51L1   10000 perm   2 sec   (5916 perm/sec)   p_kst 8.524000e-01   p_cons 6.180000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000122/OR51L1.6_950_10000_0.8524_0.618_1.png
                gene_name: OR51L1
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 31 percent done.
OR51S1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.759937e-02	ci left: 1.320796e-01	ci right 1.457315e-01	k: 1388	n:10000
Cons ci ratio: 4.896405e-02	ci left: 3.809211e-01	ci right 4.001427e-01	k: 3905	n:10000
KS ci ratio: 1.888568e-01	ci left: 3.738868e-02	ci right 4.528136e-02	k: 412	n:10000
OR51S1   10000 perm   2 sec   (5887 perm/sec)   p_kst 4.120000e-02   p_cons 3.905000e-01   p_joint 1.388000e-01

Joint ci ratio: 9.399636e-02	ci left: 7.622747e-02	ci right 8.379517e-02	k: 1599	n:20000
Cons ci ratio: 3.590333e-02	ci left: 3.666901e-01	ci right 3.801467e-01	k: 7468	n:20000
KS ci ratio: 1.322969e-01	ci left: 3.926179e-02	ci right 4.487233e-02	k: 840	n:20000
OR51S1   20000 perm   4 sec   (5212 perm/sec)   p_kst 4.200000e-02   p_cons 3.734000e-01   p_joint 7.995000e-02

Joint ci ratio: 7.739859e-02	ci left: 7.570995e-02	ci right 8.183858e-02	k: 2362	n:30000
Cons ci ratio: 2.856629e-02	ci left: 3.800868e-01	ci right 3.911354e-01	k: 11568	n:30000
KS ci ratio: 1.086289e-01	ci left: 3.933588e-02	ci right 4.388676e-02	k: 1247	n:30000
OR51S1   30000 perm   6 sec   (4969 perm/sec)   p_kst 4.156667e-02   p_cons 3.856000e-01   p_joint 7.873333e-02

Joint ci ratio: 5.879126e-02	ci left: 9.707666e-02	ci right 1.029815e-01	k: 4000	n:40000
Cons ci ratio: 2.598797e-02	ci left: 3.578365e-01	ci right 3.672835e-01	k: 14502	n:40000
KS ci ratio: 9.455108e-02	ci left: 3.924870e-02	ci right 4.316826e-02	k: 1647	n:40000
OR51S1   40000 perm   8 sec   (4822 perm/sec)   p_kst 4.117500e-02   p_cons 3.625500e-01   p_joint 1.000000e-01

Outputting figure to mutsig2_images.part000000000122/OR51S1.6_975_40000_0.041175_0.36255_0.1.png
                gene_name: OR51S1
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.041 
        ci_ks_bounds_left: 0.039 
       ci_ks_bounds_right: 0.043 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.097 
    ci_joint_bounds_right: 0.10 

Current progress: 32 percent done.
OR52A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.438940e-02	ci left: 8.747995e-01	ci right 8.875775e-01	k: 8813	n:10000
Cons ci ratio: 1.955174e-02	ci left: 7.928348e-01	ci right 8.085896e-01	k: 8008	n:10000
KS ci ratio: 2.052749e-02	ci left: 7.766130e-01	ci right 7.928209e-01	k: 7848	n:10000
OR52A5   10000 perm   2 sec   (5833 perm/sec)   p_kst 7.848000e-01   p_cons 8.008000e-01   p_joint 8.813000e-01

Outputting figure to mutsig2_images.part000000000122/OR52A5.6_954_10000_0.7848_0.8008_0.8813.png
                gene_name: OR52A5
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.89 

Current progress: 33 percent done.
OR52E6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.087943e-01	ci left: 1.086148e-01	ci right 1.212105e-01	k: 1148	n:10000
Cons ci ratio: 2.094610e-02	ci left: 7.696229e-01	ci right 7.860149e-01	k: 7779	n:10000
KS ci ratio: 2.067437e-01	ci left: 3.110398e-02	ci right 3.837033e-02	k: 346	n:10000
OR52E6   10000 perm   2 sec   (5133 perm/sec)   p_kst 3.460000e-02   p_cons 7.779000e-01   p_joint 1.148000e-01

Joint ci ratio: 9.076681e-02	ci left: 8.141531e-02	ci right 8.920575e-02	k: 1705	n:20000
Cons ci ratio: 1.443548e-02	ci left: 7.809059e-01	ci right 7.923107e-01	k: 15733	n:20000
KS ci ratio: 1.458670e-01	ci left: 3.230283e-02	ci right 3.743355e-02	k: 696	n:20000
OR52E6   20000 perm   4 sec   (4868 perm/sec)   p_kst 3.480000e-02   p_cons 7.866500e-01   p_joint 8.525000e-02

Joint ci ratio: 7.483291e-02	ci left: 8.065549e-02	ci right 8.695871e-02	k: 2513	n:30000
Cons ci ratio: 1.183152e-02	ci left: 7.806766e-01	ci right 7.900015e-01	k: 23561	n:30000
KS ci ratio: 1.236128e-01	ci left: 3.042513e-02	ci right 3.446608e-02	k: 972	n:30000
OR52E6   30000 perm   6 sec   (4721 perm/sec)   p_kst 3.240000e-02   p_cons 7.853667e-01   p_joint 8.376667e-02

Joint ci ratio: 6.512603e-02	ci left: 8.033887e-02	ci right 8.577184e-02	k: 3321	n:40000
Cons ci ratio: 1.084661e-02	ci left: 7.613666e-01	ci right 7.696948e-01	k: 30622	n:40000
KS ci ratio: 1.073662e-01	ci left: 3.051591e-02	ci right 3.400243e-02	k: 1289	n:40000
OR52E6   40000 perm   9 sec   (4615 perm/sec)   p_kst 3.222500e-02   p_cons 7.655500e-01   p_joint 8.302500e-02

Joint ci ratio: 6.280537e-02	ci left: 7.000541e-02	ci right 7.456440e-02	k: 3613	n:50000
Cons ci ratio: 9.734744e-03	ci left: 7.605746e-01	ci right 7.680347e-01	k: 38216	n:50000
KS ci ratio: 9.695171e-02	ci left: 3.012298e-02	ci right 3.321171e-02	k: 1582	n:50000
OR52E6   50000 perm   11 sec   (4537 perm/sec)   p_kst 3.164000e-02   p_cons 7.643200e-01   p_joint 7.226000e-02

Outputting figure to mutsig2_images.part000000000122/OR52E6.6_944_50000_0.03164_0.76432_0.07226.png
                gene_name: OR52E6
               theta_stop: 0.097 
                    nperm: 50000 
                     p_ks: 0.032 
        ci_ks_bounds_left: 0.030 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.072 
     ci_joint_bounds_left: 0.070 
    ci_joint_bounds_right: 0.075 

Current progress: 35 percent done.
OR56A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.487684e-02	ci left: 5.483008e-01	ci right 5.678653e-01	k: 5581	n:10000
Cons ci ratio: 6.503433e-03	ci left: 9.699492e-01	ci right 9.763711e-01	k: 9733	n:10000
KS ci ratio: 5.547877e-02	ci left: 3.236634e-01	ci right 3.422340e-01	k: 3329	n:10000
OR56A3   10000 perm   2 sec   (5904 perm/sec)   p_kst 3.329000e-01   p_cons 9.733000e-01   p_joint 5.581000e-01

Outputting figure to mutsig2_images.part000000000122/OR56A3.6_950_10000_0.3329_0.9733_0.5581.png
                gene_name: OR56A3
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 36 percent done.
OR5AR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.030980e-01	ci left: 1.197510e-01	ci right 1.328675e-01	k: 1262	n:10000
Cons ci ratio: 7.820875e-03	ci left: 9.578562e-01	ci right 9.654718e-01	k: 9618	n:10000
KS ci ratio: 1.865137e-01	ci left: 3.834345e-02	ci right 4.632594e-02	k: 422	n:10000
OR5AR1   10000 perm   2 sec   (5900 perm/sec)   p_kst 4.220000e-02   p_cons 9.618000e-01   p_joint 1.262000e-01

Joint ci ratio: 9.308249e-02	ci left: 7.764631e-02	ci right 8.527589e-02	k: 1628	n:20000
Cons ci ratio: 5.770542e-03	ci left: 9.556435e-01	ci right 9.612223e-01	k: 19170	n:20000
KS ci ratio: 1.307624e-01	ci left: 4.018178e-02	ci right 4.585205e-02	k: 859	n:20000
OR5AR1   20000 perm   4 sec   (5236 perm/sec)   p_kst 4.295000e-02   p_cons 9.585000e-01   p_joint 8.140000e-02

Joint ci ratio: 7.005644e-02	ci left: 9.117975e-02	ci right 9.783235e-02	k: 2834	n:30000
Cons ci ratio: 4.765799e-03	ci left: 9.552243e-01	ci right 9.598199e-01	k: 28727	n:30000
KS ci ratio: 1.051596e-01	ci left: 4.193421e-02	ci right 4.662123e-02	k: 1327	n:30000
OR5AR1   30000 perm   6 sec   (4993 perm/sec)   p_kst 4.423333e-02   p_cons 9.575667e-01   p_joint 9.446667e-02

Joint ci ratio: 6.182458e-02	ci left: 8.849455e-02	ci right 9.416494e-02	k: 3652	n:40000
Cons ci ratio: 4.168247e-03	ci left: 9.547106e-01	ci right 9.587228e-01	k: 38270	n:40000
KS ci ratio: 9.135951e-02	ci left: 4.198632e-02	ci right 4.603022e-02	k: 1759	n:40000
OR5AR1   40000 perm   8 sec   (4850 perm/sec)   p_kst 4.397500e-02   p_cons 9.567500e-01   p_joint 9.130000e-02

Outputting figure to mutsig2_images.part000000000122/OR5AR1.6_935_40000_0.043975_0.95675_0.0913.png
                gene_name: OR5AR1
               theta_stop: 0.091 
                    nperm: 40000 
                     p_ks: 0.044 
        ci_ks_bounds_left: 0.042 
       ci_ks_bounds_right: 0.046 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.091 
     ci_joint_bounds_left: 0.088 
    ci_joint_bounds_right: 0.094 

Current progress: 37 percent done.
OR5B3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.537640e-02	ci left: 1.666153e-01	ci right 1.815750e-01	k: 1740	n:10000
Cons ci ratio: 1.282789e-01	ci left: 7.989663e-02	ci right 9.094628e-02	k: 853	n:10000
KS ci ratio: 3.626257e-02	ci left: 5.289696e-01	ci right 5.486078e-01	k: 5388	n:10000
OR5B3   10000 perm   2 sec   (6033 perm/sec)   p_kst 5.388000e-01   p_cons 8.530000e-02   p_joint 1.740000e-01

Joint ci ratio: 4.696378e-02	ci left: 2.522444e-01	ci right 2.644260e-01	k: 5166	n:20000
Cons ci ratio: 9.085417e-02	ci left: 8.126842e-02	ci right 8.905268e-02	k: 1702	n:20000
KS ci ratio: 2.577249e-02	ci left: 5.293589e-01	ci right 5.432305e-01	k: 10726	n:20000
OR5B3   20000 perm   4 sec   (5337 perm/sec)   p_kst 5.363000e-01   p_cons 8.510000e-02   p_joint 2.583000e-01

Outputting figure to mutsig2_images.part000000000122/OR5B3.6_947_20000_0.5363_0.0851_0.2583.png
                gene_name: OR5B3
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.085 
      ci_cons_bounds_left: 0.081 
     ci_cons_bounds_right: 0.089 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 38 percent done.
OR5H1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.596265e-02	ci left: 8.508006e-01	ci right 8.645904e-01	k: 8578	n:10000
Cons ci ratio: 4.255064e-02	ci left: 4.491963e-01	ci right 4.688276e-01	k: 4590	n:10000
KS ci ratio: 1.503491e-02	ci left: 8.650892e-01	ci right 8.782934e-01	k: 8718	n:10000
OR5H1   10000 perm   2 sec   (5432 perm/sec)   p_kst 8.718000e-01   p_cons 4.590000e-01   p_joint 8.578000e-01

Outputting figure to mutsig2_images.part000000000122/OR5H1.6_944_10000_0.8718_0.459_0.8578.png
                gene_name: OR5H1
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 40 percent done.
OR5H15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.119438e-02	ci left: 7.654710e-01	ci right 7.819693e-01	k: 7738	n:10000
Cons ci ratio: 5.373928e-02	ci left: 3.378646e-01	ci right 3.566244e-01	k: 3472	n:10000
KS ci ratio: 2.363978e-02	ci left: 7.245152e-01	ci right 7.419487e-01	k: 7333	n:10000
OR5H15   10000 perm   2 sec   (5964 perm/sec)   p_kst 7.333000e-01   p_cons 3.472000e-01   p_joint 7.738000e-01

Outputting figure to mutsig2_images.part000000000122/OR5H15.6_944_10000_0.7333_0.3472_0.7738.png
                gene_name: OR5H15
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 41 percent done.
OR4X2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.766072e-02	ci left: 2.427230e-01	ci right 2.598221e-01	k: 2512	n:10000
Cons ci ratio: 1.501555e-01	ci left: 5.899102e-02	ci right 6.866498e-02	k: 637	n:10000
KS ci ratio: 2.742813e-02	ci left: 6.619944e-01	ci right 6.805058e-01	k: 6713	n:10000
OR4X2   10000 perm   2 sec   (6293 perm/sec)   p_kst 6.713000e-01   p_cons 6.370000e-02   p_joint 2.512000e-01

Joint ci ratio: 5.330378e-02	ci left: 2.071447e-01	ci right 2.185389e-01	k: 4256	n:20000
Cons ci ratio: 1.079979e-01	ci left: 5.845301e-02	ci right 6.517508e-02	k: 1235	n:20000
KS ci ratio: 1.967280e-02	ci left: 6.584100e-01	ci right 6.715420e-01	k: 13300	n:20000
OR4X2   20000 perm   4 sec   (5568 perm/sec)   p_kst 6.650000e-01   p_cons 6.175000e-02   p_joint 2.128000e-01

Joint ci ratio: 4.224550e-02	ci left: 2.182669e-01	ci right 2.277201e-01	k: 6689	n:30000
Cons ci ratio: 8.838394e-02	ci left: 5.880731e-02	ci right 6.427798e-02	k: 1845	n:30000
KS ci ratio: 1.613032e-02	ci left: 6.577528e-01	ci right 6.684823e-01	k: 19894	n:30000
OR4X2   30000 perm   6 sec   (5286 perm/sec)   p_kst 6.631333e-01   p_cons 6.150000e-02   p_joint 2.229667e-01

Outputting figure to mutsig2_images.part000000000122/OR4X2.5_916_30000_0.66313_0.0615_0.22297.png
                gene_name: OR4X2
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.061 
      ci_cons_bounds_left: 0.059 
     ci_cons_bounds_right: 0.064 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 42 percent done.
OR51M1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.369703e-01	ci left: 7.049285e-02	ci right 8.095591e-02	k: 756	n:10000
Cons ci ratio: 2.601440e-01	ci left: 1.930852e-02	ci right 2.517438e-02	k: 221	n:10000
KS ci ratio: 2.747785e-02	ci left: 6.611889e-01	ci right 6.797117e-01	k: 6705	n:10000
OR51M1   10000 perm   2 sec   (6010 perm/sec)   p_kst 6.705000e-01   p_cons 2.210000e-02   p_joint 7.560000e-02

Joint ci ratio: 9.255771e-02	ci left: 7.847822e-02	ci right 8.614373e-02	k: 1645	n:20000
Cons ci ratio: 1.820756e-01	ci left: 2.058483e-02	ci right 2.475554e-02	k: 452	n:20000
KS ci ratio: 1.915628e-02	ci left: 6.702175e-01	ci right 6.832310e-01	k: 13535	n:20000
OR51M1   20000 perm   4 sec   (5384 perm/sec)   p_kst 6.767500e-01   p_cons 2.260000e-02   p_joint 8.225000e-02

Joint ci ratio: 6.495163e-02	ci left: 1.047392e-01	ci right 1.118036e-01	k: 3247	n:30000
Cons ci ratio: 1.454663e-01	ci left: 2.191185e-02	ci right 2.538125e-02	k: 708	n:30000
KS ci ratio: 1.505384e-02	ci left: 6.880133e-01	ci right 6.984826e-01	k: 20798	n:30000
OR51M1   30000 perm   6 sec   (5126 perm/sec)   p_kst 6.932667e-01   p_cons 2.360000e-02   p_joint 1.082333e-01

Joint ci ratio: 5.963114e-02	ci left: 9.458513e-02	ci right 1.004234e-01	k: 3899	n:40000
Cons ci ratio: 1.270373e-01	ci left: 2.177117e-02	ci right 2.474860e-02	k: 929	n:40000
KS ci ratio: 1.300234e-02	ci left: 6.898591e-01	ci right 6.989127e-01	k: 27776	n:40000
OR51M1   40000 perm   8 sec   (4970 perm/sec)   p_kst 6.944000e-01   p_cons 2.322500e-02   p_joint 9.747500e-02

Joint ci ratio: 5.777023e-02	ci left: 8.187888e-02	ci right 8.676951e-02	k: 4215	n:50000
Cons ci ratio: 1.144092e-01	ci left: 2.162605e-02	ci right 2.426974e-02	k: 1146	n:50000
KS ci ratio: 1.157929e-02	ci left: 6.921877e-01	ci right 7.002695e-01	k: 34812	n:50000
OR51M1   50000 perm   10 sec   (4837 perm/sec)   p_kst 6.962400e-01   p_cons 2.292000e-02   p_joint 8.430000e-02

Joint ci ratio: 5.428186e-02	ci left: 7.779188e-02	ci right 8.214885e-02	k: 4797	n:60000
Cons ci ratio: 1.044177e-01	ci left: 2.175036e-02	ci right 2.416275e-02	k: 1376	n:60000
KS ci ratio: 1.062142e-02	ci left: 6.904957e-01	ci right 6.978855e-01	k: 41652	n:60000
OR51M1   60000 perm   13 sec   (4723 perm/sec)   p_kst 6.942000e-01   p_cons 2.293333e-02   p_joint 7.995000e-02

Joint ci ratio: 4.549184e-02	ci left: 9.371419e-02	ci right 9.809080e-02	k: 6712	n:70000
Cons ci ratio: 9.354583e-02	ci left: 2.332548e-02	ci right 2.562845e-02	k: 1712	n:70000
KS ci ratio: 9.828907e-03	ci left: 6.909723e-01	ci right 6.978116e-01	k: 48608	n:70000
OR51M1   70000 perm   15 sec   (4623 perm/sec)   p_kst 6.944000e-01   p_cons 2.445714e-02   p_joint 9.588571e-02

Outputting figure to mutsig2_images.part000000000122/OR51M1.5_985_70000_0.6944_0.024457_0.095886.png
                gene_name: OR51M1
               theta_stop: 0.094 
                    nperm: 70000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.024 
      ci_cons_bounds_left: 0.023 
     ci_cons_bounds_right: 0.026 
                  p_joint: 0.096 
     ci_joint_bounds_left: 0.094 
    ci_joint_bounds_right: 0.098 

Current progress: 43 percent done.
OR51V1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.549380e-02	ci left: 1.372712e-01	ci right 1.511368e-01	k: 1441	n:10000
Cons ci ratio: 1.824899e-02	ci left: 8.142578e-01	ci right 8.293542e-01	k: 8219	n:10000
KS ci ratio: 1.429861e-01	ci left: 6.488166e-02	ci right 7.497062e-02	k: 698	n:10000
OR51V1   10000 perm   2 sec   (6323 perm/sec)   p_kst 6.980000e-02   p_cons 8.219000e-01   p_joint 1.441000e-01

Joint ci ratio: 5.580292e-02	ci left: 1.923481e-01	ci right 2.034399e-01	k: 3957	n:20000
Cons ci ratio: 1.281973e-02	ci left: 8.184479e-01	ci right 8.290578e-01	k: 16476	n:20000
KS ci ratio: 1.011086e-01	ci left: 6.635513e-02	ci right 7.347052e-02	k: 1397	n:20000
OR51V1   20000 perm   4 sec   (5589 perm/sec)   p_kst 6.985000e-02   p_cons 8.238000e-01   p_joint 1.978500e-01

Joint ci ratio: 5.257515e-02	ci left: 1.522075e-01	ci right 1.604591e-01	k: 4689	n:30000
Cons ci ratio: 1.082711e-02	ci left: 8.093145e-01	ci right 8.181580e-01	k: 24413	n:30000
KS ci ratio: 8.281044e-02	ci left: 6.661478e-02	ci right 7.240226e-02	k: 2084	n:30000
OR51V1   30000 perm   6 sec   (5341 perm/sec)   p_kst 6.946667e-02   p_cons 8.137667e-01   p_joint 1.563000e-01

Outputting figure to mutsig2_images.part000000000122/OR51V1.5_969_30000_0.069467_0.81377_0.1563.png
                gene_name: OR51V1
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.069 
        ci_ks_bounds_left: 0.067 
       ci_ks_bounds_right: 0.072 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 44 percent done.
OR52B4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.494759e-02	ci left: 5.472988e-01	ci right 5.668679e-01	k: 5571	n:10000
Cons ci ratio: 1.576595e-02	ci left: 8.538604e-01	ci right 8.675287e-01	k: 8608	n:10000
KS ci ratio: 5.199590e-02	ci left: 3.528704e-01	ci right 3.718099e-01	k: 3623	n:10000
OR52B4   10000 perm   2 sec   (5812 perm/sec)   p_kst 3.623000e-01   p_cons 8.608000e-01   p_joint 5.571000e-01

Outputting figure to mutsig2_images.part000000000122/OR52B4.5_949_10000_0.3623_0.8608_0.5571.png
                gene_name: OR52B4
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 46 percent done.
OR52E4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.313059e-02	ci left: 1.742843e-01	ci right 1.895015e-01	k: 1818	n:10000
Cons ci ratio: 3.755887e-02	ci left: 5.114541e-01	ci right 5.311335e-01	k: 5213	n:10000
KS ci ratio: 1.245670e-01	ci left: 8.446093e-02	ci right 9.577916e-02	k: 900	n:10000
OR52E4   10000 perm   2 sec   (6351 perm/sec)   p_kst 9.000000e-02   p_cons 5.213000e-01   p_joint 1.818000e-01

Joint ci ratio: 6.021413e-02	ci left: 1.695589e-01	ci right 1.801358e-01	k: 3496	n:20000
Cons ci ratio: 2.644053e-02	ci left: 5.166002e-01	ci right 5.304930e-01	k: 10471	n:20000
KS ci ratio: 8.713076e-02	ci left: 8.788185e-02	ci right 9.593725e-02	k: 1837	n:20000
OR52E4   20000 perm   4 sec   (5607 perm/sec)   p_kst 9.185000e-02   p_cons 5.235500e-01   p_joint 1.748000e-01

Outputting figure to mutsig2_images.part000000000122/OR52E4.5_941_20000_0.09185_0.52355_0.1748.png
                gene_name: OR52E4
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.092 
        ci_ks_bounds_left: 0.088 
       ci_ks_bounds_right: 0.096 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 47 percent done.
OR52E8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.784546e-02	ci left: 6.552495e-01	ci right 6.738545e-01	k: 6646	n:10000
Cons ci ratio: 7.562442e-03	ci left: 9.603708e-01	ci right 9.677557e-01	k: 9642	n:10000
KS ci ratio: 3.965135e-02	ci left: 4.843537e-01	ci right 5.040497e-01	k: 4942	n:10000
OR52E8   10000 perm   2 sec   (6030 perm/sec)   p_kst 4.942000e-01   p_cons 9.642000e-01   p_joint 6.646000e-01

Outputting figure to mutsig2_images.part000000000122/OR52E8.5_956_10000_0.4942_0.9642_0.6646.png
                gene_name: OR52E8
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.67 

Current progress: 48 percent done.
OR56B4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.160350e-02	ci left: 9.139945e-01	ci right 9.247597e-01	k: 9195	n:10000
KS ci ratio: 1.988199e-02	ci left: 7.873578e-01	ci right 8.032698e-01	k: 7954	n:10000
OR56B4   10000 perm   2 sec   (6320 perm/sec)   p_kst 7.954000e-01   p_cons 9.195000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000122/OR56B4.5_962_10000_0.7954_0.9195_1.png
                gene_name: OR56B4
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 49 percent done.
OR5D13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.006410e-02	ci left: 6.200485e-01	ci right 6.390760e-01	k: 6296	n:10000
Cons ci ratio: 3.616056e-02	ci left: 5.303714e-01	ci right 5.500052e-01	k: 5402	n:10000
KS ci ratio: 5.394138e-02	ci left: 3.361759e-01	ci right 3.549142e-01	k: 3455	n:10000
OR5D13   10000 perm   2 sec   (6390 perm/sec)   p_kst 3.455000e-01   p_cons 5.402000e-01   p_joint 6.296000e-01

Outputting figure to mutsig2_images.part000000000122/OR5D13.5_948_10000_0.3455_0.5402_0.6296.png
                gene_name: OR5D13
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 51 percent done.
OR51F2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.917845e-02	ci left: 4.903513e-01	ci right 5.100486e-01	k: 5002	n:10000
Cons ci ratio: 2.859839e-02	ci left: 6.431744e-01	ci right 6.619367e-01	k: 6526	n:10000
KS ci ratio: 7.921578e-02	ci left: 1.888498e-01	ci right 2.045273e-01	k: 1966	n:10000
OR51F2   10000 perm   2 sec   (6241 perm/sec)   p_kst 1.966000e-01   p_cons 6.526000e-01   p_joint 5.002000e-01

Outputting figure to mutsig2_images.part000000000122/OR51F2.4_1031_10000_0.1966_0.6526_0.5002.png
                gene_name: OR51F2
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 52 percent done.
OR52A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.135979e-01	ci left: 1.003243e-01	ci right 1.125061e-01	k: 1063	n:10000
Cons ci ratio: 2.118569e-01	ci left: 2.958536e-02	ci right 3.669001e-02	k: 330	n:10000
KS ci ratio: 6.285915e-02	ci left: 2.711159e-01	ci right 2.888125e-01	k: 2799	n:10000
OR52A4   10000 perm   2 sec   (5950 perm/sec)   p_kst 2.799000e-01   p_cons 3.300000e-02   p_joint 1.063000e-01

Joint ci ratio: 9.737753e-02	ci left: 7.128887e-02	ci right 7.863527e-02	k: 1498	n:20000
Cons ci ratio: 1.508729e-01	ci left: 3.018195e-02	ci right 3.515513e-02	k: 652	n:20000
KS ci ratio: 4.430002e-02	ci left: 2.750757e-01	ci right 2.875880e-01	k: 5626	n:20000
OR52A4   20000 perm   4 sec   (5299 perm/sec)   p_kst 2.813000e-01   p_cons 3.260000e-02   p_joint 7.490000e-02

Joint ci ratio: 9.157119e-02	ci left: 5.492461e-02	ci right 6.022814e-02	k: 1726	n:30000
Cons ci ratio: 1.246762e-01	ci left: 2.990786e-02	ci right 3.391679e-02	k: 956	n:30000
KS ci ratio: 3.614258e-02	ci left: 2.765482e-01	ci right 2.867608e-01	k: 8449	n:30000
OR52A4   30000 perm   6 sec   (5051 perm/sec)   p_kst 2.816333e-01   p_cons 3.186667e-02   p_joint 5.753333e-02

Joint ci ratio: 7.299413e-02	ci left: 6.479000e-02	ci right 6.972305e-02	k: 2689	n:40000
Cons ci ratio: 1.083244e-01	ci left: 2.998029e-02	ci right 3.343813e-02	k: 1267	n:40000
KS ci ratio: 3.139479e-02	ci left: 2.760264e-01	ci right 2.848555e-01	k: 11217	n:40000
OR52A4   40000 perm   8 sec   (4893 perm/sec)   p_kst 2.804250e-01   p_cons 3.167500e-02   p_joint 6.722500e-02

Joint ci ratio: 6.118710e-02	ci left: 7.353415e-02	ci right 7.819524e-02	k: 3792	n:50000
Cons ci ratio: 9.707845e-02	ci left: 3.004486e-02	ci right 3.312984e-02	k: 1578	n:50000
KS ci ratio: 2.758833e-02	ci left: 2.836548e-01	ci right 2.916099e-01	k: 14381	n:50000
OR52A4   50000 perm   10 sec   (4775 perm/sec)   p_kst 2.876200e-01   p_cons 3.156000e-02   p_joint 7.584000e-02

Outputting figure to mutsig2_images.part000000000122/OR52A4.4_919_50000_0.28762_0.03156_0.07584.png
                gene_name: OR52A4
               theta_stop: 0.097 
                    nperm: 50000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.032 
      ci_cons_bounds_left: 0.030 
     ci_cons_bounds_right: 0.033 
                  p_joint: 0.076 
     ci_joint_bounds_left: 0.074 
    ci_joint_bounds_right: 0.078 

Current progress: 53 percent done.
OR52B2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.758489e-02	ci left: 8.250345e-01	ci right 8.397713e-01	k: 8325	n:10000
Cons ci ratio: 2.872461e-02	ci left: 6.411625e-01	ci right 6.599498e-01	k: 6506	n:10000
KS ci ratio: 2.578324e-02	ci left: 6.888946e-01	ci right 7.069900e-01	k: 6980	n:10000
OR52B2   10000 perm   2 sec   (5839 perm/sec)   p_kst 6.980000e-01   p_cons 6.506000e-01   p_joint 8.325000e-01

Outputting figure to mutsig2_images.part000000000122/OR52B2.4_975_10000_0.698_0.6506_0.8325.png
                gene_name: OR52B2
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 54 percent done.
OR52N1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.320754e-02	ci left: 4.416119e-01	ci right 4.612164e-01	k: 4514	n:10000
KS ci ratio: 2.044241e-02	ci left: 7.780316e-01	ci right 7.942014e-01	k: 7862	n:10000
OR52N1   10000 perm   2 sec   (6046 perm/sec)   p_kst 7.862000e-01   p_cons 4.514000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000122/OR52N1.4_966_10000_0.7862_0.4514_1.png
                gene_name: OR52N1
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 56 percent done.
OR52N4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.026335e-01	ci left: 1.207287e-01	ci right 1.338892e-01	k: 1272	n:10000
Cons ci ratio: 2.019685e-01	ci left: 3.262466e-02	ci right 4.004861e-02	k: 362	n:10000
KS ci ratio: 3.439863e-02	ci left: 5.551154e-01	ci right 5.746468e-01	k: 5649	n:10000
OR52N4   10000 perm   2 sec   (6021 perm/sec)   p_kst 5.649000e-01   p_cons 3.620000e-02   p_joint 1.272000e-01

Joint ci ratio: 6.884178e-02	ci left: 1.346767e-01	ci right 1.443284e-01	k: 2789	n:20000
Cons ci ratio: 1.447942e-01	ci left: 3.278524e-02	ci right 3.795099e-02	k: 706	n:20000
KS ci ratio: 2.439187e-02	ci left: 5.566429e-01	ci right 5.704387e-01	k: 11271	n:20000
OR52N4   20000 perm   4 sec   (5396 perm/sec)   p_kst 5.635500e-01   p_cons 3.530000e-02   p_joint 1.394500e-01

Joint ci ratio: 6.078004e-02	ci left: 1.180534e-01	ci right 1.254867e-01	k: 3652	n:30000
Cons ci ratio: 1.153520e-01	ci left: 3.492467e-02	ci right 3.923224e-02	k: 1111	n:30000
KS ci ratio: 1.995343e-02	ci left: 5.569975e-01	ci right 5.682571e-01	k: 16879	n:30000
OR52N4   30000 perm   6 sec   (4938 perm/sec)   p_kst 5.626333e-01   p_cons 3.703333e-02   p_joint 1.217333e-01

Joint ci ratio: 4.831724e-02	ci left: 1.378753e-01	ci right 1.447269e-01	k: 5651	n:40000
Cons ci ratio: 1.014966e-01	ci left: 3.412248e-02	ci right 3.779529e-02	k: 1437	n:40000
KS ci ratio: 1.725959e-02	ci left: 5.583475e-01	ci right 5.680933e-01	k: 22529	n:40000
OR52N4   40000 perm   8 sec   (4840 perm/sec)   p_kst 5.632250e-01   p_cons 3.592500e-02   p_joint 1.412750e-01

Joint ci ratio: 4.521508e-02	ci left: 1.277174e-01	ci right 1.336456e-01	k: 6533	n:50000
Cons ci ratio: 9.022328e-02	ci left: 3.473625e-02	ci right 3.803786e-02	k: 1818	n:50000
KS ci ratio: 1.548293e-02	ci left: 5.574175e-01	ci right 5.661353e-01	k: 28089	n:50000
OR52N4   50000 perm   11 sec   (4751 perm/sec)   p_kst 5.617800e-01   p_cons 3.636000e-02   p_joint 1.306600e-01

Outputting figure to mutsig2_images.part000000000122/OR52N4.4_970_50000_0.56178_0.03636_0.13066.png
                gene_name: OR52N4
               theta_stop: 0.090 
                    nperm: 50000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.036 
      ci_cons_bounds_left: 0.035 
     ci_cons_bounds_right: 0.038 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 57 percent done.
OR52N5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.699424e-02	ci left: 6.690435e-01	ci right 6.874525e-01	k: 6783	n:10000
Cons ci ratio: 1.893089e-02	ci left: 8.030849e-01	ci right 8.185336e-01	k: 8109	n:10000
KS ci ratio: 3.851041e-02	ci left: 4.989503e-01	ci right 5.186445e-01	k: 5088	n:10000
OR52N5   10000 perm   2 sec   (6368 perm/sec)   p_kst 5.088000e-01   p_cons 8.109000e-01   p_joint 6.783000e-01

Outputting figure to mutsig2_images.part000000000122/OR52N5.4_979_10000_0.5088_0.8109_0.6783.png
                gene_name: OR52N5
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 58 percent done.
OR5A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.549010e-02	ci left: 6.937343e-01	ci right 7.117474e-01	k: 7028	n:10000
KS ci ratio: 1.655961e-02	ci left: 8.414233e-01	ci right 8.555730e-01	k: 8486	n:10000
OR5A1   10000 perm   2 sec   (5916 perm/sec)   p_kst 8.486000e-01   p_cons 7.028000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000122/OR5A1.4_952_10000_0.8486_0.7028_1.png
                gene_name: OR5A1
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 59 percent done.
OR5A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.539588e-02	ci left: 5.409873e-01	ci right 5.605831e-01	k: 5508	n:10000
Cons ci ratio: 2.946119e-02	ci left: 6.294971e-01	ci right 6.484219e-01	k: 6390	n:10000
KS ci ratio: 4.034749e-02	ci left: 4.756597e-01	ci right 4.953487e-01	k: 4855	n:10000
OR5A2   10000 perm   2 sec   (6011 perm/sec)   p_kst 4.855000e-01   p_cons 6.390000e-01   p_joint 5.508000e-01

Outputting figure to mutsig2_images.part000000000122/OR5A2.4_977_10000_0.4855_0.639_0.5508.png
                gene_name: OR5A2
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 60 percent done.
OR5AP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.698355e-02	ci left: 5.191594e-01	ci right 5.388237e-01	k: 5290	n:10000
Cons ci ratio: 5.663503e-02	ci left: 3.146312e-01	ci right 3.330715e-01	k: 3238	n:10000
KS ci ratio: 4.261923e-02	ci left: 4.483979e-01	ci right 4.680265e-01	k: 4582	n:10000
OR5AP2   10000 perm   2 sec   (6421 perm/sec)   p_kst 4.582000e-01   p_cons 3.238000e-01   p_joint 5.290000e-01

Outputting figure to mutsig2_images.part000000000122/OR5AP2.4_955_10000_0.4582_0.3238_0.529.png
                gene_name: OR5AP2
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 62 percent done.
OR5AU1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.224759e-02	ci left: 1.774321e-01	ci right 1.927518e-01	k: 1850	n:10000
Cons ci ratio: 7.376657e-02	ci left: 2.120120e-01	ci right 2.283513e-01	k: 2201	n:10000
KS ci ratio: 6.089172e-02	ci left: 2.839917e-01	ci right 3.019291e-01	k: 2929	n:10000
OR5AU1   10000 perm   2 sec   (6016 perm/sec)   p_kst 2.929000e-01   p_cons 2.201000e-01   p_joint 1.850000e-01

Outputting figure to mutsig2_images.part000000000122/OR5AU1.4_1092_10000_0.2929_0.2201_0.185.png
                gene_name: OR5AU1
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 63 percent done.
OR5B21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.145642e-01	ci left: 9.876499e-02	ci right 1.108663e-01	k: 1047	n:10000
Cons ci ratio: 1.182535e-01	ci left: 9.311639e-02	ci right 1.049184e-01	k: 989	n:10000
KS ci ratio: 1.272230e-01	ci left: 8.115862e-02	ci right 9.228352e-02	k: 866	n:10000
OR5B21   10000 perm   2 sec   (6009 perm/sec)   p_kst 8.660000e-02   p_cons 9.890000e-02   p_joint 1.047000e-01

Joint ci ratio: 1.086079e-01	ci left: 5.781956e-02	ci right 6.450873e-02	k: 1222	n:20000
Cons ci ratio: 8.577564e-02	ci left: 9.048006e-02	ci right 9.863825e-02	k: 1890	n:20000
KS ci ratio: 8.999049e-02	ci left: 8.273747e-02	ci right 9.058319e-02	k: 1732	n:20000
OR5B21   20000 perm   4 sec   (5369 perm/sec)   p_kst 8.660000e-02   p_cons 9.450000e-02   p_joint 6.110000e-02

Joint ci ratio: 9.315558e-02	ci left: 5.313126e-02	ci right 5.835519e-02	k: 1671	n:30000
Cons ci ratio: 7.073353e-02	ci left: 8.957236e-02	ci right 9.617340e-02	k: 2785	n:30000
KS ci ratio: 7.351613e-02	ci left: 8.337536e-02	ci right 8.977164e-02	k: 2596	n:30000
OR5B21   30000 perm   6 sec   (5128 perm/sec)   p_kst 8.653333e-02   p_cons 9.283333e-02   p_joint 5.570000e-02

Outputting figure to mutsig2_images.part000000000122/OR5B21.4_932_30000_0.086533_0.092833_0.0557.png
                gene_name: OR5B21
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.087 
        ci_ks_bounds_left: 0.083 
       ci_ks_bounds_right: 0.090 
                   p_cons: 0.093 
      ci_cons_bounds_left: 0.090 
     ci_cons_bounds_right: 0.096 
                  p_joint: 0.056 
     ci_joint_bounds_left: 0.053 
    ci_joint_bounds_right: 0.058 

Current progress: 64 percent done.
OR4L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.183862e-01	ci left: 9.292171e-02	ci right 1.047132e-01	k: 987	n:10000
Cons ci ratio: 4.783125e-02	ci left: 3.920712e-01	ci right 4.113861e-01	k: 4017	n:10000
KS ci ratio: 2.028398e-01	ci left: 3.233938e-02	ci right 3.973408e-02	k: 359	n:10000
OR4L1   10000 perm   2 sec   (6390 perm/sec)   p_kst 3.590000e-02   p_cons 4.017000e-01   p_joint 9.870000e-02

Joint ci ratio: 8.406786e-02	ci left: 9.391315e-02	ci right 1.022041e-01	k: 1960	n:20000
Cons ci ratio: 3.395909e-02	ci left: 3.930010e-01	ci right 4.066281e-01	k: 7996	n:20000
KS ci ratio: 1.401345e-01	ci left: 3.500605e-02	ci right 4.032945e-02	k: 752	n:20000
OR4L1   20000 perm   4 sec   (5638 perm/sec)   p_kst 3.760000e-02   p_cons 3.998000e-01   p_joint 9.800000e-02

Joint ci ratio: 6.424404e-02	ci left: 1.068421e-01	ci right 1.139669e-01	k: 3311	n:30000
Cons ci ratio: 2.765149e-02	ci left: 3.955802e-01	ci right 4.067056e-01	k: 12034	n:30000
KS ci ratio: 1.135611e-01	ci left: 3.602672e-02	ci right 4.039662e-02	k: 1145	n:30000
OR4L1   30000 perm   6 sec   (5328 perm/sec)   p_kst 3.816667e-02   p_cons 4.011333e-01   p_joint 1.103667e-01

Joint ci ratio: 6.045034e-02	ci left: 9.224216e-02	ci right 9.801677e-02	k: 3804	n:40000
Cons ci ratio: 2.393523e-02	ci left: 3.965662e-01	ci right 4.061982e-01	k: 16055	n:40000
KS ci ratio: 9.898880e-02	ci left: 3.585456e-02	ci right 3.961294e-02	k: 1508	n:40000
OR4L1   40000 perm   8 sec   (5149 perm/sec)   p_kst 3.770000e-02   p_cons 4.013750e-01   p_joint 9.510000e-02

Outputting figure to mutsig2_images.part000000000122/OR4L1.3_943_40000_0.0377_0.40137_0.0951.png
                gene_name: OR4L1
               theta_stop: 0.099 
                    nperm: 40000 
                     p_ks: 0.038 
        ci_ks_bounds_left: 0.036 
       ci_ks_bounds_right: 0.040 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.095 
     ci_joint_bounds_left: 0.092 
    ci_joint_bounds_right: 0.098 

Current progress: 65 percent done.
OR4N5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.048496e-02	ci left: 7.773223e-01	ci right 7.935111e-01	k: 7855	n:10000
Cons ci ratio: 3.269431e-02	ci left: 5.799842e-01	ci right 5.993635e-01	k: 5897	n:10000
KS ci ratio: 3.830297e-02	ci left: 5.016506e-01	ci right 5.213427e-01	k: 5115	n:10000
OR4N5   10000 perm   2 sec   (6424 perm/sec)   p_kst 5.115000e-01   p_cons 5.897000e-01   p_joint 7.855000e-01

Outputting figure to mutsig2_images.part000000000122/OR4N5.3_930_10000_0.5115_0.5897_0.7855.png
                gene_name: OR4N5
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.79 

Current progress: 67 percent done.
OR51A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.398082e-02	ci left: 8.808366e-01	ci right 8.933369e-01	k: 8872	n:10000
KS ci ratio: 4.099081e-02	ci left: 4.677677e-01	ci right 4.874453e-01	k: 4776	n:10000
OR51A4   10000 perm   2 sec   (6317 perm/sec)   p_kst 4.776000e-01   p_cons 8.872000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000122/OR51A4.3_944_10000_0.4776_0.8872_1.png
                gene_name: OR51A4
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
OR51A7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.244799e-02	ci left: 4.503941e-01	ci right 4.700291e-01	k: 4602	n:10000
Cons ci ratio: 6.712558e-02	ci left: 2.456887e-01	ci right 2.628547e-01	k: 2542	n:10000
KS ci ratio: 5.763252e-02	ci left: 3.070909e-01	ci right 3.254162e-01	k: 3162	n:10000
OR51A7   10000 perm   2 sec   (6497 perm/sec)   p_kst 3.162000e-01   p_cons 2.542000e-01   p_joint 4.602000e-01

Outputting figure to mutsig2_images.part000000000122/OR51A7.3_941_10000_0.3162_0.2542_0.4602.png
                gene_name: OR51A7
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 69 percent done.
OR51B4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.283085e-02	ci left: 7.380550e-01	ci right 7.552011e-01	k: 7467	n:10000
KS ci ratio: 2.025385e-02	ci left: 7.811735e-01	ci right 7.972577e-01	k: 7893	n:10000
OR51B4   10000 perm   2 sec   (6319 perm/sec)   p_kst 7.893000e-01   p_cons 7.467000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000122/OR51B4.3_936_10000_0.7893_0.7467_1.png
                gene_name: OR51B4
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
OR51B5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.482342e-02	ci left: 3.289257e-01	ci right 3.475686e-01	k: 3382	n:10000
Cons ci ratio: 4.575590e-02	ci left: 4.134900e-01	ci right 4.329547e-01	k: 4232	n:10000
KS ci ratio: 7.237715e-02	ci left: 2.185242e-01	ci right 2.350353e-01	k: 2267	n:10000
OR51B5   10000 perm   2 sec   (6389 perm/sec)   p_kst 2.267000e-01   p_cons 4.232000e-01   p_joint 3.382000e-01

Outputting figure to mutsig2_images.part000000000122/OR51B5.3_943_10000_0.2267_0.4232_0.3382.png
                gene_name: OR51B5
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 72 percent done.
OR51E2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.368164e-02	ci left: 4.362244e-01	ci right 4.558070e-01	k: 4460	n:10000
Cons ci ratio: 1.235153e-01	ci left: 8.582142e-02	ci right 9.721783e-02	k: 914	n:10000
KS ci ratio: 3.172396e-02	ci left: 5.945361e-01	ci right 6.138031e-01	k: 6042	n:10000
OR51E2   10000 perm   2 sec   (6216 perm/sec)   p_kst 6.042000e-01   p_cons 9.140000e-02   p_joint 4.460000e-01

Joint ci ratio: 4.675635e-02	ci left: 2.539312e-01	ci right 2.661387e-01	k: 5200	n:20000
Cons ci ratio: 8.622963e-02	ci left: 8.959754e-02	ci right 9.772104e-02	k: 1872	n:20000
KS ci ratio: 2.265212e-02	ci left: 5.927201e-01	ci right 6.063509e-01	k: 11991	n:20000
OR51E2   20000 perm   4 sec   (5507 perm/sec)   p_kst 5.995500e-01   p_cons 9.360000e-02   p_joint 2.600000e-01

Outputting figure to mutsig2_images.part000000000122/OR51E2.3_967_20000_0.59955_0.0936_0.26.png
                gene_name: OR51E2
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.094 
      ci_cons_bounds_left: 0.090 
     ci_cons_bounds_right: 0.098 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 73 percent done.
OR51F1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.372829e-02	ci left: 8.845229e-01	ci right 8.968485e-01	k: 8908	n:10000
KS ci ratio: 1.263811e-02	ci left: 9.000087e-01	ci right 9.115537e-01	k: 9059	n:10000
OR51F1   10000 perm   2 sec   (6430 perm/sec)   p_kst 9.059000e-01   p_cons 8.908000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000122/OR51F1.3_942_10000_0.9059_0.8908_1.png
                gene_name: OR51F1
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 74 percent done.
OR51G1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.038799e-02	ci left: 1.510978e-01	ci right 1.655018e-01	k: 1582	n:10000
Cons ci ratio: 1.691880e-02	ci left: 8.357199e-01	ci right 8.500797e-01	k: 8430	n:10000
KS ci ratio: 1.876749e-01	ci left: 3.786599e-02	ci right 4.580373e-02	k: 417	n:10000
OR51G1   10000 perm   2 sec   (6468 perm/sec)   p_kst 4.170000e-02   p_cons 8.430000e-01   p_joint 1.582000e-01

Joint ci ratio: 6.277616e-02	ci left: 1.580039e-01	ci right 1.682942e-01	k: 3262	n:20000
Cons ci ratio: 1.260951e-02	ci left: 8.232539e-01	ci right 8.337505e-01	k: 16571	n:20000
KS ci ratio: 1.369529e-01	ci left: 3.664924e-02	ci right 4.208573e-02	k: 786	n:20000
OR51G1   20000 perm   4 sec   (5711 perm/sec)   p_kst 3.930000e-02   p_cons 8.285500e-01   p_joint 1.631000e-01

Joint ci ratio: 6.106589e-02	ci left: 1.170666e-01	ci right 1.244737e-01	k: 3622	n:30000
Cons ci ratio: 1.024048e-02	ci left: 8.257682e-01	ci right 8.343012e-01	k: 24902	n:30000
KS ci ratio: 1.127453e-01	ci left: 3.654551e-02	ci right 4.094439e-02	k: 1161	n:30000
OR51G1   30000 perm   6 sec   (5387 perm/sec)   p_kst 3.870000e-02   p_cons 8.300667e-01   p_joint 1.207333e-01

Joint ci ratio: 5.222095e-02	ci left: 1.202412e-01	ci right 1.267135e-01	k: 4938	n:40000
Cons ci ratio: 8.850900e-03	ci left: 8.269128e-01	ci right 8.342891e-01	k: 33225	n:40000
KS ci ratio: 9.716320e-02	ci left: 3.719708e-02	ci right 4.102020e-02	k: 1563	n:40000
OR51G1   40000 perm   8 sec   (5207 perm/sec)   p_kst 3.907500e-02   p_cons 8.306250e-01   p_joint 1.234500e-01

Outputting figure to mutsig2_images.part000000000122/OR51G1.3_968_40000_0.039075_0.83062_0.12345.png
                gene_name: OR51G1
               theta_stop: 0.097 
                    nperm: 40000 
                     p_ks: 0.039 
        ci_ks_bounds_left: 0.037 
       ci_ks_bounds_right: 0.041 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 75 percent done.
OR51I2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.084238e-02	ci left: 6.079920e-01	ci right 6.271395e-01	k: 6176	n:10000
Cons ci ratio: 5.564151e-02	ci left: 3.223729e-01	ci right 3.409253e-01	k: 3316	n:10000
KS ci ratio: 1.973534e-02	ci left: 7.897918e-01	ci right 8.056344e-01	k: 7978	n:10000
OR51I2   10000 perm   2 sec   (6320 perm/sec)   p_kst 7.978000e-01   p_cons 3.316000e-01   p_joint 6.176000e-01

Outputting figure to mutsig2_images.part000000000122/OR51I2.3_943_10000_0.7978_0.3316_0.6176.png
                gene_name: OR51I2
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 77 percent done.
OR51Q1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.351152e-02	ci left: 5.679478e-01	ci right 5.874070e-01	k: 5777	n:10000
Cons ci ratio: 6.899925e-02	ci left: 2.355088e-01	ci right 2.524406e-01	k: 2439	n:10000
KS ci ratio: 3.179695e-02	ci left: 5.934319e-01	ci right 6.127080e-01	k: 6031	n:10000
OR51Q1   10000 perm   2 sec   (6474 perm/sec)   p_kst 6.031000e-01   p_cons 2.439000e-01   p_joint 5.777000e-01

Outputting figure to mutsig2_images.part000000000122/OR51Q1.3_958_10000_0.6031_0.2439_0.5777.png
                gene_name: OR51Q1
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 78 percent done.
OR51T1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.455362e-02	ci left: 7.092699e-01	ci right 7.270028e-01	k: 7182	n:10000
Cons ci ratio: 6.039576e-02	ci left: 2.873607e-01	ci right 3.053581e-01	k: 2963	n:10000
KS ci ratio: 2.314463e-02	ci left: 7.327995e-01	ci right 7.500596e-01	k: 7415	n:10000
OR51T1   10000 perm   2 sec   (5546 perm/sec)   p_kst 7.415000e-01   p_cons 2.963000e-01   p_joint 7.182000e-01

Outputting figure to mutsig2_images.part000000000122/OR51T1.3_1068_10000_0.7415_0.2963_0.7182.png
                gene_name: OR51T1
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 79 percent done.
OR52D1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.475682e-02	ci left: 5.500043e-01	ci right 5.695609e-01	k: 5598	n:10000
Cons ci ratio: 7.677004e-02	ci left: 1.987996e-01	ci right 2.147715e-01	k: 2067	n:10000
KS ci ratio: 1.186767e-02	ci left: 9.104942e-01	ci right 9.214620e-01	k: 9161	n:10000
OR52D1   10000 perm   2 sec   (6531 perm/sec)   p_kst 9.161000e-01   p_cons 2.067000e-01   p_joint 5.598000e-01

Outputting figure to mutsig2_images.part000000000122/OR52D1.3_961_10000_0.9161_0.2067_0.5598.png
                gene_name: OR52D1
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 80 percent done.
OR52K1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.469341e-02	ci left: 5.509062e-01	ci right 5.704585e-01	k: 5607	n:10000
Cons ci ratio: 3.247189e-02	ci left: 5.832952e-01	ci right 6.026506e-01	k: 5930	n:10000
KS ci ratio: 4.671537e-02	ci left: 4.034258e-01	ci right 4.228248e-01	k: 4131	n:10000
OR52K1   10000 perm   2 sec   (6490 perm/sec)   p_kst 4.131000e-01   p_cons 5.930000e-01   p_joint 5.607000e-01

Outputting figure to mutsig2_images.part000000000122/OR52K1.3_949_10000_0.4131_0.593_0.5607.png
                gene_name: OR52K1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 81 percent done.
OR52L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.209850e-01	ci left: 8.922438e-02	ci right 1.008128e-01	k: 949	n:10000
Cons ci ratio: 9.283885e-02	ci left: 1.442309e-01	ci right 1.583729e-01	k: 1512	n:10000
KS ci ratio: 1.035205e-01	ci left: 1.188712e-01	ci right 1.319479e-01	k: 1253	n:10000
OR52L1   10000 perm   2 sec   (6317 perm/sec)   p_kst 1.253000e-01   p_cons 1.512000e-01   p_joint 9.490000e-02

Joint ci ratio: 7.653606e-02	ci left: 1.114947e-01	ci right 1.204173e-01	k: 2318	n:20000
Cons ci ratio: 6.771760e-02	ci left: 1.386191e-01	ci right 1.483848e-01	k: 2869	n:20000
KS ci ratio: 7.255777e-02	ci left: 1.227101e-01	ci right 1.319986e-01	k: 2546	n:20000
OR52L1   20000 perm   4 sec   (5596 perm/sec)   p_kst 1.273000e-01   p_cons 1.434500e-01   p_joint 1.159000e-01

Outputting figure to mutsig2_images.part000000000122/OR52L1.3_994_20000_0.1273_0.14345_0.1159.png
                gene_name: OR52L1
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 83 percent done.
OR52M1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.573964e-02	ci left: 8.542685e-01	ci right 8.679204e-01	k: 8612	n:10000
Cons ci ratio: 4.889213e-02	ci left: 3.816178e-01	ci right 4.008456e-01	k: 3912	n:10000
KS ci ratio: 2.496038e-02	ci left: 7.025094e-01	ci right 7.203673e-01	k: 7115	n:10000
OR52M1   10000 perm   2 sec   (6508 perm/sec)   p_kst 7.115000e-01   p_cons 3.912000e-01   p_joint 8.612000e-01

Outputting figure to mutsig2_images.part000000000122/OR52M1.3_957_10000_0.7115_0.3912_0.8612.png
                gene_name: OR52M1
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 84 percent done.
OR52W1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.909827e-02	ci left: 6.352285e-01	ci right 6.540872e-01	k: 6447	n:10000
KS ci ratio: 2.127910e-02	ci left: 7.640535e-01	ci right 7.805875e-01	k: 7724	n:10000
OR52W1   10000 perm   2 sec   (6529 perm/sec)   p_kst 7.724000e-01   p_cons 6.447000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000122/OR52W1.3_965_10000_0.7724_0.6447_1.png
                gene_name: OR52W1
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 85 percent done.
OR5B17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.488470e-02	ci left: 3.284292e-01	ci right 3.470654e-01	k: 3377	n:10000
Cons ci ratio: 3.952468e-02	ci left: 4.859529e-01	ci right 5.056495e-01	k: 4958	n:10000
KS ci ratio: 8.576435e-02	ci left: 1.653377e-01	ci right 1.802534e-01	k: 1727	n:10000
OR5B17   10000 perm   2 sec   (6327 perm/sec)   p_kst 1.727000e-01   p_cons 4.958000e-01   p_joint 3.377000e-01

Outputting figure to mutsig2_images.part000000000122/OR5B17.3_947_10000_0.1727_0.4958_0.3377.png
                gene_name: OR5B17
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 86 percent done.
OR4S1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.696332e-02	ci left: 6.695471e-01	ci right 6.879487e-01	k: 6788	n:10000
KS ci ratio: 2.778304e-02	ci left: 6.562561e-01	ci right 6.748474e-01	k: 6656	n:10000
OR4S1   10000 perm   1 sec   (6716 perm/sec)   p_kst 6.656000e-01   p_cons 6.788000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000122/OR4S1.2_933_10000_0.6656_0.6788_1.png
                gene_name: OR4S1
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
OR4X1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.726672e-02	ci left: 6.646124e-01	ci right 6.830863e-01	k: 6739	n:10000
KS ci ratio: 3.743866e-02	ci left: 5.130550e-01	ci right 5.327317e-01	k: 5229	n:10000
OR4X1   10000 perm   2 sec   (6655 perm/sec)   p_kst 5.229000e-01   p_cons 6.739000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000122/OR4X1.2_921_10000_0.5229_0.6739_1.png
                gene_name: OR4X1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
OR51B6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.310703e-02	ci left: 2.150704e-01	ci right 2.314911e-01	k: 2232	n:10000
Cons ci ratio: 7.637447e-02	ci left: 2.004751e-01	ci right 2.164950e-01	k: 2084	n:10000
KS ci ratio: 7.196689e-02	ci left: 2.204982e-01	ci right 2.370601e-01	k: 2287	n:10000
OR51B6   10000 perm   2 sec   (6572 perm/sec)   p_kst 2.287000e-01   p_cons 2.084000e-01   p_joint 2.232000e-01

Outputting figure to mutsig2_images.part000000000122/OR51B6.2_942_10000_0.2287_0.2084_0.2232.png
                gene_name: OR51B6
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 90 percent done.
OR51G2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.134786e-01	ci left: 1.005192e-01	ci right 1.127110e-01	k: 1065	n:10000
Cons ci ratio: 1.245670e-01	ci left: 8.446093e-02	ci right 9.577916e-02	k: 900	n:10000
KS ci ratio: 6.538379e-02	ci left: 2.556770e-01	ci right 2.730605e-01	k: 2643	n:10000
OR51G2   10000 perm   2 sec   (6601 perm/sec)   p_kst 2.643000e-01   p_cons 9.000000e-02   p_joint 1.065000e-01

Joint ci ratio: 8.148920e-02	ci left: 9.945851e-02	ci right 1.079571e-01	k: 2073	n:20000
Cons ci ratio: 8.800347e-02	ci left: 8.626460e-02	ci right 9.425499e-02	k: 1804	n:20000
KS ci ratio: 4.625148e-02	ci left: 2.580991e-01	ci right 2.703695e-01	k: 5284	n:20000
OR51G2   20000 perm   3 sec   (5869 perm/sec)   p_kst 2.642000e-01   p_cons 9.020000e-02   p_joint 1.036500e-01

Outputting figure to mutsig2_images.part000000000122/OR51G2.2_949_20000_0.2642_0.0902_0.10365.png
                gene_name: OR51G2
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.090 
      ci_cons_bounds_left: 0.086 
     ci_cons_bounds_right: 0.094 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.099 
    ci_joint_bounds_right: 0.11 

Current progress: 91 percent done.
OR52B6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.541742e-02	ci left: 2.554791e-01	ci right 2.728584e-01	k: 2641	n:10000
Cons ci ratio: 8.141213e-02	ci left: 1.804823e-01	ci right 1.958998e-01	k: 1881	n:10000
KS ci ratio: 6.081832e-02	ci left: 2.844871e-01	ci right 3.024334e-01	k: 2934	n:10000
OR52B6   10000 perm   2 sec   (6563 perm/sec)   p_kst 2.934000e-01   p_cons 1.881000e-01   p_joint 2.641000e-01

Outputting figure to mutsig2_images.part000000000122/OR52B6.2_1010_10000_0.2934_0.1881_0.2641.png
                gene_name: OR52B6
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 93 percent done.
OR52I2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.171276e-02	ci left: 9.125529e-01	ci right 9.234021e-01	k: 9181	n:10000
KS ci ratio: 4.660958e-02	ci left: 4.045217e-01	ci right 4.239283e-01	k: 4142	n:10000
OR52I2   10000 perm   2 sec   (6476 perm/sec)   p_kst 4.142000e-01   p_cons 9.181000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000122/OR52I2.2_1057_10000_0.4142_0.9181_1.png
                gene_name: OR52I2
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
OR52K2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.894940e-02	ci left: 8.027803e-01	ci right 8.182384e-01	k: 8106	n:10000
Cons ci ratio: 3.187005e-02	ci left: 5.923277e-01	ci right 6.116129e-01	k: 6020	n:10000
KS ci ratio: 6.417870e-02	ci left: 2.628999e-01	ci right 2.804333e-01	k: 2716	n:10000
OR52K2   10000 perm   1 sec   (6680 perm/sec)   p_kst 2.716000e-01   p_cons 6.020000e-01   p_joint 8.106000e-01

Outputting figure to mutsig2_images.part000000000122/OR52K2.2_949_10000_0.2716_0.602_0.8106.png
                gene_name: OR52K2
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 95 percent done.
OR52N2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.096528e-02	ci left: 2.834963e-01	ci right 3.014247e-01	k: 2924	n:10000
Cons ci ratio: 6.465227e-02	ci left: 2.600302e-01	ci right 2.775047e-01	k: 2687	n:10000
KS ci ratio: 5.033869e-02	ci left: 3.678862e-01	ci right 3.869853e-01	k: 3774	n:10000
OR52N2   10000 perm   1 sec   (6708 perm/sec)   p_kst 3.774000e-01   p_cons 2.687000e-01   p_joint 2.924000e-01

Outputting figure to mutsig2_images.part000000000122/OR52N2.2_969_10000_0.3774_0.2687_0.2924.png
                gene_name: OR52N2
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 96 percent done.
OR52R1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.201483e-01	ci left: 9.039166e-02	ci right 1.020448e-01	k: 961	n:10000
Cons ci ratio: 2.863014e-01	ci left: 1.576399e-02	ci right 2.112177e-02	k: 183	n:10000
KS ci ratio: 2.098851e-02	ci left: 7.689140e-01	ci right 7.853243e-01	k: 7772	n:10000
OR52R1   10000 perm   1 sec   (6903 perm/sec)   p_kst 7.772000e-01   p_cons 1.830000e-02   p_joint 9.610000e-02

Joint ci ratio: 7.612818e-02	ci left: 1.125763e-01	ci right 1.215353e-01	k: 2340	n:20000
Cons ci ratio: 2.117242e-01	ci left: 1.506432e-02	ci right 1.867810e-02	k: 336	n:20000
KS ci ratio: 1.475533e-02	ci left: 7.733861e-01	ci right 7.849326e-01	k: 15584	n:20000
OR52R1   20000 perm   3 sec   (6091 perm/sec)   p_kst 7.792000e-01   p_cons 1.680000e-02   p_joint 1.170000e-01

Joint ci ratio: 1.012337e-01	ci left: 4.518536e-02	ci right 5.003607e-02	k: 1427	n:30000
Cons ci ratio: 1.745493e-01	ci left: 1.508879e-02	ci right 1.800592e-02	k: 495	n:30000
KS ci ratio: 1.197878e-02	ci left: 7.764443e-01	ci right 7.858345e-01	k: 23435	n:30000
OR52R1   30000 perm   5 sec   (5787 perm/sec)   p_kst 7.811667e-01   p_cons 1.650000e-02   p_joint 4.756667e-02

Joint ci ratio: 8.054793e-02	ci left: 5.364398e-02	ci right 5.817076e-02	k: 2235	n:40000
Cons ci ratio: 1.519060e-01	ci left: 1.512992e-02	ci right 1.764100e-02	k: 654	n:40000
KS ci ratio: 1.039414e-02	ci left: 7.764110e-01	ci right 7.845483e-01	k: 31220	n:40000
OR52R1   40000 perm   7 sec   (5589 perm/sec)   p_kst 7.805000e-01   p_cons 1.635000e-02   p_joint 5.587500e-02

Joint ci ratio: 7.182691e-02	ci left: 5.419711e-02	ci right 5.825460e-02	k: 2810	n:50000
Cons ci ratio: 1.373041e-01	ci left: 1.493767e-02	ci right 1.715903e-02	k: 801	n:50000
KS ci ratio: 9.265855e-03	ci left: 7.779925e-01	ci right 7.852548e-01	k: 39082	n:50000
OR52R1   50000 perm   9 sec   (5419 perm/sec)   p_kst 7.816400e-01   p_cons 1.602000e-02   p_joint 5.620000e-02

Joint ci ratio: 7.697388e-02	ci left: 3.983623e-02	ci right 4.304165e-02	k: 2485	n:60000
Cons ci ratio: 1.264404e-01	ci left: 1.476890e-02	ci right 1.677834e-02	k: 945	n:60000
KS ci ratio: 8.480987e-03	ci left: 7.774008e-01	ci right 7.840387e-01	k: 46844	n:60000
OR52R1   60000 perm   11 sec   (5275 perm/sec)   p_kst 7.807333e-01   p_cons 1.575000e-02   p_joint 4.141667e-02

Joint ci ratio: 5.546018e-02	ci left: 6.476384e-02	ci right 6.847219e-02	k: 4662	n:70000
Cons ci ratio: 1.169895e-01	ci left: 1.486144e-02	ci right 1.672187e-02	k: 1104	n:70000
KS ci ratio: 7.851975e-03	ci left: 7.776448e-01	ci right 7.837891e-01	k: 54651	n:70000
OR52R1   70000 perm   14 sec   (5153 perm/sec)   p_kst 7.807286e-01   p_cons 1.577143e-02   p_joint 6.660000e-02

Joint ci ratio: 5.179578e-02	ci left: 6.507935e-02	ci right 6.855214e-02	k: 5344	n:80000
Cons ci ratio: 1.089899e-01	ci left: 1.504453e-02	ci right 1.679083e-02	k: 1272	n:80000
KS ci ratio: 7.362887e-03	ci left: 7.770001e-01	ci right 7.827546e-01	k: 62391	n:80000
OR52R1   80000 perm   16 sec   (5037 perm/sec)   p_kst 7.798875e-01   p_cons 1.590000e-02   p_joint 6.680000e-02

Joint ci ratio: 8.705314e-02	ci left: 2.107331e-02	ci right 2.300211e-02	k: 1982	n:90000
Cons ci ratio: 1.036474e-01	ci left: 1.483296e-02	ci right 1.646514e-02	k: 1407	n:90000
KS ci ratio: 6.940644e-03	ci left: 7.772233e-01	ci right 7.826476e-01	k: 70195	n:90000
OR52R1   90000 perm   18 sec   (4932 perm/sec)   p_kst 7.799444e-01   p_cons 1.563333e-02   p_joint 2.202222e-02

Joint ci ratio: 5.106438e-02	ci left: 5.422718e-02	ci right 5.707866e-02	k: 5564	n:100000
Cons ci ratio: 9.796171e-02	ci left: 1.498738e-02	ci right 1.654089e-02	k: 1575	n:100000
KS ci ratio: 6.583023e-03	ci left: 7.774395e-01	ci right 7.825842e-01	k: 78002	n:100000
OR52R1   100000 perm   21 sec   (4835 perm/sec)   p_kst 7.800200e-01   p_cons 1.575000e-02   p_joint 5.564000e-02

Outputting figure to mutsig2_images.part000000000122/OR52R1.2_951_100000_0.78002_0.01575_0.05564.png
                gene_name: OR52R1
               theta_stop: 0.098 
                    nperm: 100000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.016 
      ci_cons_bounds_left: 0.015 
     ci_cons_bounds_right: 0.017 
                  p_joint: 0.056 
     ci_joint_bounds_left: 0.054 
    ci_joint_bounds_right: 0.057 

Current progress: 98 percent done.
OR5AN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.183877e-02	ci left: 3.542622e-01	ci right 3.732173e-01	k: 3637	n:10000
Cons ci ratio: 5.738033e-02	ci left: 3.089757e-01	ci right 3.273303e-01	k: 3181	n:10000
KS ci ratio: 3.204988e-02	ci left: 5.896176e-01	ci right 6.089245e-01	k: 5993	n:10000
OR5AN1   10000 perm   1 sec   (6861 perm/sec)   p_kst 5.993000e-01   p_cons 3.181000e-01   p_joint 3.637000e-01

Outputting figure to mutsig2_images.part000000000122/OR5AN1.2_939_10000_0.5993_0.3181_0.3637.png
                gene_name: OR5AN1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 99 percent done.
OR5C1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.374621e-01	ci left: 7.000876e-02	ci right 8.044030e-02	k: 751	n:10000
Cons ci ratio: 6.035677e-01	ci left: 2.943789e-03	ci right 5.558045e-03	k: 41	n:10000
KS ci ratio: 2.835916e-02	ci left: 6.469974e-01	ci right 6.657114e-01	k: 6564	n:10000
OR5C1   10000 perm   2 sec   (6633 perm/sec)   p_kst 6.564000e-01   p_cons 4.100000e-03   p_joint 7.510000e-02

Joint ci ratio: 8.976383e-02	ci left: 8.312927e-02	ci right 9.099126e-02	k: 1740	n:20000
Cons ci ratio: 3.991121e-01	ci left: 3.844683e-03	ci right 5.803559e-03	k: 95	n:20000
KS ci ratio: 1.991392e-02	ci left: 6.529349e-01	ci right 6.661187e-01	k: 13191	n:20000
OR5C1   20000 perm   3 sec   (5848 perm/sec)   p_kst 6.595500e-01   p_cons 4.750000e-03   p_joint 8.700000e-02

Joint ci ratio: 7.019323e-02	ci left: 9.085169e-02	ci right 9.749381e-02	k: 2824	n:30000
Cons ci ratio: 3.270193e-01	ci left: 3.988271e-03	ci right 5.576641e-03	k: 142	n:30000
KS ci ratio: 1.621825e-02	ci left: 6.553102e-01	ci right 6.660586e-01	k: 19821	n:30000
OR5C1   30000 perm   5 sec   (5528 perm/sec)   p_kst 6.607000e-01   p_cons 4.733333e-03   p_joint 9.413333e-02

Joint ci ratio: 6.768054e-02	ci left: 7.475027e-02	ci right 8.001128e-02	k: 3094	n:40000
Cons ci ratio: 2.852192e-01	ci left: 4.030184e-03	ci right 5.393254e-03	k: 187	n:40000
KS ci ratio: 1.411056e-02	ci left: 6.539543e-01	ci right 6.632726e-01	k: 26345	n:40000
OR5C1   40000 perm   7 sec   (5340 perm/sec)   p_kst 6.586250e-01   p_cons 4.675000e-03   p_joint 7.735000e-02

Joint ci ratio: 6.634668e-02	ci left: 6.309072e-02	ci right 6.743992e-02	k: 3262	n:50000
Cons ci ratio: 2.584444e-01	ci left: 3.988372e-03	ci right 5.190261e-03	k: 228	n:50000
KS ci ratio: 1.263565e-02	ci left: 6.539232e-01	ci right 6.622585e-01	k: 32905	n:50000
OR5C1   50000 perm   10 sec   (5190 perm/sec)   p_kst 6.581000e-01   p_cons 4.560000e-03   p_joint 6.524000e-02

Joint ci ratio: 6.582974e-02	ci left: 5.396015e-02	ci right 5.764963e-02	k: 3347	n:60000
Cons ci ratio: 2.341361e-01	ci left: 4.105687e-03	ci right 5.209734e-03	k: 278	n:60000
KS ci ratio: 1.152963e-02	ci left: 6.544891e-01	ci right 6.620956e-01	k: 39498	n:60000
OR5C1   60000 perm   12 sec   (4977 perm/sec)   p_kst 6.583000e-01   p_cons 4.633333e-03   p_joint 5.578333e-02

Joint ci ratio: 6.666314e-02	ci left: 4.550008e-02	ci right 4.865188e-02	k: 3294	n:70000
Cons ci ratio: 2.221459e-01	ci left: 3.936682e-03	ci right 4.933656e-03	k: 309	n:70000
KS ci ratio: 1.066930e-02	ci left: 6.549877e-01	ci right 6.620277e-01	k: 46096	n:70000
OR5C1   70000 perm   14 sec   (4872 perm/sec)   p_kst 6.585143e-01   p_cons 4.414286e-03   p_joint 4.705714e-02

Joint ci ratio: 5.792294e-02	ci left: 5.257937e-02	ci right 5.572806e-02	k: 4331	n:80000
Cons ci ratio: 2.067131e-01	ci left: 4.012426e-03	ci right 4.949068e-03	k: 357	n:80000
KS ci ratio: 9.978603e-03	ci left: 6.552897e-01	ci right 6.618738e-01	k: 52687	n:80000
OR5C1   80000 perm   17 sec   (4773 perm/sec)   p_kst 6.585875e-01   p_cons 4.462500e-03   p_joint 5.413750e-02

Joint ci ratio: 5.753023e-02	ci left: 4.764252e-02	ci right 5.047552e-02	k: 4414	n:90000
Cons ci ratio: 1.922128e-01	ci left: 4.157812e-03	ci right 5.052357e-03	k: 413	n:90000
KS ci ratio: 9.415337e-03	ci left: 6.551240e-01	ci right 6.613325e-01	k: 59241	n:90000
OR5C1   90000 perm   19 sec   (4679 perm/sec)   p_kst 6.582333e-01   p_cons 4.588889e-03   p_joint 4.904444e-02

Joint ci ratio: 5.721897e-02	ci left: 4.354581e-02	ci right 4.612068e-02	k: 4482	n:100000
Cons ci ratio: 1.839632e-01	ci left: 4.104133e-03	ci right 4.945004e-03	k: 451	n:100000
KS ci ratio: 8.938601e-03	ci left: 6.549601e-01	ci right 6.608508e-01	k: 65791	n:100000
OR5C1   100000 perm   22 sec   (4594 perm/sec)   p_kst 6.579100e-01   p_cons 4.510000e-03   p_joint 4.482000e-02

Joint ci ratio: 5.457529e-02	ci left: 4.357603e-02	ci right 4.602986e-02	k: 4927	n:110000
Cons ci ratio: 1.752605e-01	ci left: 4.130423e-03	ci right 4.932408e-03	k: 497	n:110000
KS ci ratio: 8.525571e-03	ci left: 6.549420e-01	ci right 6.605587e-01	k: 72353	n:110000
OR5C1   110000 perm   24 sec   (4511 perm/sec)   p_kst 6.577545e-01   p_cons 4.518182e-03   p_joint 4.479091e-02

Joint ci ratio: 5.841019e-02	ci left: 3.511736e-02	ci right 3.723847e-02	k: 4340	n:120000
Cons ci ratio: 1.667652e-01	ci left: 4.201028e-03	ci right 4.973214e-03	k: 549	n:120000
KS ci ratio: 8.160585e-03	ci left: 6.551745e-01	ci right 6.605512e-01	k: 78944	n:120000
OR5C1   120000 perm   27 sec   (4429 perm/sec)   p_kst 6.578667e-01   p_cons 4.575000e-03   p_joint 3.616667e-02

Joint ci ratio: 5.624135e-02	ci left: 3.500902e-02	ci right 3.704251e-02	k: 4682	n:130000
Cons ci ratio: 1.596630e-01	ci left: 4.246791e-03	ci right 4.990956e-03	k: 599	n:130000
KS ci ratio: 7.834502e-03	ci left: 6.556220e-01	ci right 6.607863e-01	k: 85567	n:130000
OR5C1   130000 perm   30 sec   (4351 perm/sec)   p_kst 6.582077e-01   p_cons 4.607692e-03   p_joint 3.601538e-02

Joint ci ratio: 5.410230e-02	ci left: 3.516416e-02	ci right 3.712654e-02	k: 5059	n:140000
Cons ci ratio: 1.536348e-01	ci left: 4.272873e-03	ci right 4.990738e-03	k: 647	n:140000
KS ci ratio: 7.544135e-03	ci left: 6.560378e-01	ci right 6.610128e-01	k: 92194	n:140000
OR5C1   140000 perm   33 sec   (4280 perm/sec)   p_kst 6.585286e-01   p_cons 4.621429e-03   p_joint 3.613571e-02

Joint ci ratio: 5.218013e-02	ci left: 3.531304e-02	ci right 3.721160e-02	k: 5438	n:150000
Cons ci ratio: 1.480281e-01	ci left: 4.308776e-03	ci right 5.003917e-03	k: 697	n:150000
KS ci ratio: 7.286524e-03	ci left: 6.562341e-01	ci right 6.610398e-01	k: 98796	n:150000
OR5C1   150000 perm   36 sec   (4210 perm/sec)   p_kst 6.586400e-01   p_cons 4.646667e-03   p_joint 3.625333e-02

Joint ci ratio: 5.064834e-02	ci left: 3.517274e-02	ci right 3.700662e-02	k: 5773	n:160000
Cons ci ratio: 1.432825e-01	ci left: 4.322526e-03	ci right 4.995617e-03	k: 744	n:160000
KS ci ratio: 7.059307e-03	ci left: 6.560452e-01	ci right 6.606990e-01	k: 105340	n:160000
OR5C1   160000 perm   39 sec   (4146 perm/sec)   p_kst 6.583750e-01   p_cons 4.650000e-03   p_joint 3.608125e-02

Joint ci ratio: 4.921471e-02	ci left: 3.509037e-02	ci right 3.686668e-02	k: 6115	n:170000
Cons ci ratio: 1.383529e-01	ci left: 4.374725e-03	ci right 5.030577e-03	k: 798	n:170000
KS ci ratio: 6.856127e-03	ci left: 6.556156e-01	ci right 6.601319e-01	k: 111839	n:170000
OR5C1   170000 perm   42 sec   (4084 perm/sec)   p_kst 6.578765e-01   p_cons 4.694118e-03   p_joint 3.597059e-02

Joint ci ratio: 4.826966e-02	ci left: 3.449065e-02	ci right 3.620214e-02	k: 6361	n:180000
Cons ci ratio: 1.348559e-01	ci left: 4.357042e-03	ci right 4.992407e-03	k: 840	n:180000
KS ci ratio: 6.664914e-03	ci left: 6.555473e-01	ci right 6.599365e-01	k: 118394	n:180000
OR5C1   180000 perm   45 sec   (4021 perm/sec)   p_kst 6.577444e-01   p_cons 4.666667e-03   p_joint 3.533889e-02

Joint ci ratio: 4.701289e-02	ci left: 3.446950e-02	ci right 3.613419e-02	k: 6706	n:190000
Cons ci ratio: 1.310163e-01	ci left: 4.382134e-03	ci right 5.001548e-03	k: 890	n:190000
KS ci ratio: 6.486731e-03	ci left: 6.556353e-01	ci right 6.599073e-01	k: 124977	n:190000
OR5C1   190000 perm   48 sec   (3959 perm/sec)   p_kst 6.577737e-01   p_cons 4.684211e-03   p_joint 3.529474e-02

Joint ci ratio: 4.586293e-02	ci left: 3.443121e-02	ci right 3.605230e-02	k: 7047	n:200000
Cons ci ratio: 1.271481e-01	ci left: 4.429155e-03	ci right 5.035337e-03	k: 945	n:200000
KS ci ratio: 6.320641e-03	ci left: 6.558211e-01	ci right 6.599844e-01	k: 131581	n:200000
OR5C1   200000 perm   51 sec   (3901 perm/sec)   p_kst 6.579050e-01   p_cons 4.725000e-03   p_joint 3.523500e-02

Joint ci ratio: 4.474949e-02	ci left: 3.446296e-02	ci right 3.604514e-02	k: 7402	n:210000
Cons ci ratio: 1.241027e-01	ci left: 4.435020e-03	ci right 5.026398e-03	k: 992	n:210000
KS ci ratio: 6.168775e-03	ci left: 6.558378e-01	ci right 6.599007e-01	k: 138153	n:210000
OR5C1   210000 perm   55 sec   (3845 perm/sec)   p_kst 6.578714e-01   p_cons 4.723810e-03   p_joint 3.524762e-02

Joint ci ratio: 4.404103e-02	ci left: 3.399305e-02	ci right 3.552833e-02	k: 7646	n:220000
Cons ci ratio: 1.210908e-01	ci left: 4.453734e-03	ci right 5.032161e-03	k: 1042	n:220000
KS ci ratio: 6.028694e-03	ci left: 6.557539e-01	ci right 6.597237e-01	k: 144703	n:220000
OR5C1   220000 perm   58 sec   (3788 perm/sec)   p_kst 6.577409e-01   p_cons 4.736364e-03   p_joint 3.475455e-02

Joint ci ratio: 4.308021e-02	ci left: 3.399876e-02	ci right 3.549995e-02	k: 7991	n:230000
Cons ci ratio: 1.184514e-01	ci left: 4.458319e-03	ci right 5.023838e-03	k: 1089	n:230000
KS ci ratio: 5.899449e-03	ci left: 6.555478e-01	ci right 6.594309e-01	k: 151223	n:230000
OR5C1   230000 perm   62 sec   (3734 perm/sec)   p_kst 6.574913e-01   p_cons 4.734783e-03   p_joint 3.474348e-02

Joint ci ratio: 4.212472e-02	ci left: 3.409093e-02	ci right 3.556200e-02	k: 8357	n:240000
Cons ci ratio: 1.156204e-01	ci left: 4.490974e-03	ci right 5.046090e-03	k: 1143	n:240000
KS ci ratio: 5.773683e-03	ci left: 6.557101e-01	ci right 6.595111e-01	k: 157827	n:240000
OR5C1   240000 perm   65 sec   (3681 perm/sec)   p_kst 6.576125e-01   p_cons 4.762500e-03   p_joint 3.482083e-02

Joint ci ratio: 4.122277e-02	ci left: 3.418795e-02	ci right 3.563086e-02	k: 8726	n:250000
Cons ci ratio: 1.127470e-01	ci left: 4.540601e-03	ci right 5.086976e-03	k: 1202	n:250000
KS ci ratio: 5.657842e-03	ci left: 6.556841e-01	ci right 6.594083e-01	k: 164387	n:250000
OR5C1   250000 perm   69 sec   (3629 perm/sec)   p_kst 6.575480e-01   p_cons 4.808000e-03   p_joint 3.490400e-02

Joint ci ratio: 4.042244e-02	ci left: 3.420163e-02	ci right 3.561645e-02	k: 9075	n:260000
Cons ci ratio: 1.099901e-01	ci left: 4.594050e-03	ci right 5.132463e-03	k: 1263	n:260000
KS ci ratio: 5.550173e-03	ci left: 6.555413e-01	ci right 6.591936e-01	k: 170916	n:260000
OR5C1   260000 perm   73 sec   (3578 perm/sec)   p_kst 6.573692e-01   p_cons 4.857692e-03   p_joint 3.490385e-02

Joint ci ratio: 3.963866e-02	ci left: 3.426225e-02	ci right 3.565146e-02	k: 9437	n:270000
Cons ci ratio: 1.072633e-01	ci left: 4.658109e-03	ci right 5.189641e-03	k: 1328	n:270000
KS ci ratio: 5.445201e-03	ci left: 6.556768e-01	ci right 6.592605e-01	k: 177517	n:270000
OR5C1   270000 perm   77 sec   (3525 perm/sec)   p_kst 6.574704e-01   p_cons 4.918519e-03   p_joint 3.495185e-02

Joint ci ratio: 3.897302e-02	ci left: 3.419141e-02	ci right 3.555395e-02	k: 9763	n:280000
Cons ci ratio: 1.055316e-01	ci left: 4.644707e-03	ci right 5.165622e-03	k: 1372	n:280000
KS ci ratio: 5.345627e-03	ci left: 6.558319e-01	ci right 6.593506e-01	k: 184126	n:280000
OR5C1   280000 perm   81 sec   (3449 perm/sec)   p_kst 6.575929e-01   p_cons 4.900000e-03   p_joint 3.486786e-02

Joint ci ratio: 3.829658e-02	ci left: 3.420081e-02	ci right 3.553954e-02	k: 10111	n:290000
Cons ci ratio: 1.040288e-01	ci left: 4.618858e-03	ci right 5.129046e-03	k: 1412	n:290000
KS ci ratio: 5.251806e-03	ci left: 6.559353e-01	ci right 6.593926e-01	k: 190723	n:290000
OR5C1   290000 perm   85 sec   (3405 perm/sec)   p_kst 6.576655e-01   p_cons 4.868966e-03   p_joint 3.486552e-02

Joint ci ratio: 3.766538e-02	ci left: 3.418995e-02	ci right 3.550572e-02	k: 10453	n:300000
Cons ci ratio: 1.022355e-01	ci left: 4.627264e-03	ci right 5.129040e-03	k: 1462	n:300000
KS ci ratio: 5.164133e-03	ci left: 6.559122e-01	ci right 6.593114e-01	k: 197284	n:300000
OR5C1   300000 perm   90 sec   (3333 perm/sec)   p_kst 6.576133e-01   p_cons 4.873333e-03   p_joint 3.484333e-02

Joint ci ratio: 3.709466e-02	ci left: 3.412561e-02	ci right 3.541859e-02	k: 10778	n:310000
Cons ci ratio: 1.005986e-01	ci left: 4.628909e-03	ci right 5.122352e-03	k: 1510	n:310000
KS ci ratio: 5.082565e-03	ci left: 6.557263e-01	ci right 6.590707e-01	k: 203794	n:310000
OR5C1   310000 perm   94 sec   (3293 perm/sec)   p_kst 6.574000e-01   p_cons 4.870968e-03   p_joint 3.476774e-02

Joint ci ratio: 3.649128e-02	ci left: 3.417075e-02	ci right 3.544394e-02	k: 11137	n:320000
Cons ci ratio: 9.916592e-02	ci left: 4.618319e-03	ci right 5.103214e-03	k: 1554	n:320000
KS ci ratio: 5.002763e-03	ci left: 6.557308e-01	ci right 6.590226e-01	k: 210361	n:320000
OR5C1   320000 perm   98 sec   (3255 perm/sec)   p_kst 6.573781e-01   p_cons 4.856250e-03   p_joint 3.480312e-02

Outputting figure to mutsig2_images.part000000000122/OR5C1.2_966_320000_0.65738_0.0048563_0.034803.png
                gene_name: OR5C1
               theta_stop: 0.099 
                    nperm: 320000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.0049 
      ci_cons_bounds_left: 0.0046 
     ci_cons_bounds_right: 0.0051 
                  p_joint: 0.035 
     ci_joint_bounds_left: 0.034 
    ci_joint_bounds_right: 0.035 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000122
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 122 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1730>
Subject: Job 8004347: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1730>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000123> was used as the working directory.
Started at Sun Nov 11 15:11:13 2012
Results reported at Sun Nov 11 18:05:52 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000123.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000123.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 123  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000123.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  10174.65 sec.
    Max Memory :      4824 MB
    Max Swap   :      7224 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
123
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 123
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 123: processing genes 11038 - 11128
Calculating significance of each gene.
Using projection method.
11038	OR5H2	4.152036e-03
11039	OR5H6	7.072379e-01
11040	OR5I1	4.112552e-01
11041	OR5J2	1.899216e-01
11042	OR5K1	4.367518e-04
11043	OR5K2	6.734846e-01
11044	OR5K3	1.094921e-02
11045	OR5K4	9.172653e-02
11046	OR5L1	6.428396e-02
11047	OR5L2	7.232197e-10
11048	OR5M1	1.902049e-01
11049	OR5M10	8.135137e-03
11050	OR5M11	2.894707e-03
11051	OR5M3	4.412543e-03
11052	OR5M8	2.000534e-02
11053	OR5M9	5.935477e-05
11054	OR5P2	5.452200e-01
11055	OR5P3	3.038226e-01
11056	OR5R1	6.205248e-01
11057	OR5T1	8.970388e-04
11058	OR5T2	6.635747e-01
11059	OR5T3	1.394073e-02
11060	OR5V1	6.252902e-01
11061	OR5W2	2.683936e-02
11062	OR6A2	3.092622e-01
11063	OR6B1	1
11064	OR6B2	7.592808e-02
11065	OR6B3	1
11066	OR6C1	1
11067	OR6C2	7.393481e-01
11068	OR6C3	1
11069	OR6C4	4.003057e-01
11070	OR6C6	6.786574e-02
11071	OR6C65	1.818556e-02
11072	OR6C68	4.770791e-01
11073	OR6C70	1.454207e-01
11074	OR6C74	5.165007e-01
11075	OR6C75	6.717693e-03
11076	OR6C76	4.088534e-01
11077	OR6F1	2.257333e-07
11078	OR6K2	5.502024e-04
11079	OR6K3	1.574544e-05
11080	OR6K6	4.687811e-02
11081	OR6M1	6.684428e-02
11082	OR6N1	1.376335e-02
11083	OR6N2	1.359046e-01
11084	OR6Q1	1
11085	OR6S1	1.070919e-02
11086	OR6T1	2.043009e-02
11087	OR6V1	5.366166e-02
11088	OR6X1	7.227363e-02
11089	OR6Y1	9.954878e-02
11090	OR7A10	4.263811e-01
11091	OR7A17	4.303323e-01
11092	OR7A5	1
11093	OR7C1	1
11094	OR7C2	1.970816e-01
11095	OR7D2	6.111607e-02
11096	OR7D4	6.868313e-02
11097	OR7E24	1.532277e-01
11098	OR7G1	1
11099	OR7G2	1
11100	OR7G3	5.614167e-01
11101	OR8A1	1
11102	OR8B12	6.915061e-01
11103	OR8B2	2.374873e-01
11104	OR8B3	3.062844e-02
11105	OR8B4	4.533823e-01
11106	OR8B8	2.268745e-02
11107	OR8D1	9.471498e-02
11108	OR8D2	1
11109	OR8D4	6.865918e-02
11110	OR8G1	1
11111	OR8G2	1.061488e-01
11112	OR8G5	1
11113	OR8H1	2.867130e-04
11114	OR8H2	2.006275e-04
11115	OR8H3	5.779032e-01
11116	OR8I2	1.873033e-01
11117	OR8J1	3.287004e-02
11118	OR8J3	1.262950e-01
11119	OR8K1	2.793565e-01
11120	OR8K3	3.103437e-04
11121	OR8K5	2.142505e-02
11122	OR8S1	1.599212e-01
11123	OR8U8	1
11124	OR9A2	1.150896e-02
11125	OR9A4	3.942170e-01
11126	OR9G1	1
11127	OR9G4	1
11128	OR9G9	4.119869e-02
Done

Running MutSig 2:
Scatter job 123: processing genes 11038 - 11128
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
OR5L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.031520e-02	ci left: 4.760594e-01	ci right 4.957488e-01	k: 4859	n:10000
Cons ci ratio: 4.853484e-02	ci left: 3.851018e-01	ci right 4.043596e-01	k: 3947	n:10000
KS ci ratio: 4.667687e-02	ci left: 4.038243e-01	ci right 4.232261e-01	k: 4135	n:10000
OR5L2   10000 perm   2 sec   (5976 perm/sec)   p_kst 4.135000e-01   p_cons 3.947000e-01   p_joint 4.859000e-01

Outputting figure to mutsig2_images.part000000000123/OR5L2.15_940_10000_0.4135_0.3947_0.4859.png
                gene_name: OR5L2
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 1 percent done.
OR6F1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.313059e-02	ci left: 1.742843e-01	ci right 1.895015e-01	k: 1818	n:10000
Cons ci ratio: 9.884244e-02	ci left: 1.291424e-01	ci right 1.426705e-01	k: 1358	n:10000
KS ci ratio: 5.688161e-02	ci left: 3.127459e-01	ci right 3.311579e-01	k: 3219	n:10000
OR6F1   10000 perm   2 sec   (6392 perm/sec)   p_kst 3.219000e-01   p_cons 1.358000e-01   p_joint 1.818000e-01

Outputting figure to mutsig2_images.part000000000123/OR6F1.13_931_10000_0.3219_0.1358_0.1818.png
                gene_name: OR6F1
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.19 

Current progress: 3 percent done.
OR8H2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.561004e-02	ci left: 1.369772e-01	ci right 1.508309e-01	k: 1438	n:10000
Cons ci ratio: 3.786852e-02	ci left: 5.073522e-01	ci right 5.270378e-01	k: 5172	n:10000
KS ci ratio: 1.264263e-01	ci left: 8.212963e-02	ci right 9.331191e-02	k: 876	n:10000
OR8H2   10000 perm   1 sec   (6755 perm/sec)   p_kst 8.760000e-02   p_cons 5.172000e-01   p_joint 1.438000e-01

Joint ci ratio: 6.362867e-02	ci left: 1.544010e-01	ci right 1.645982e-01	k: 3189	n:20000
Cons ci ratio: 2.619777e-02	ci left: 5.212028e-01	ci right 5.350890e-01	k: 10563	n:20000
KS ci ratio: 9.016148e-02	ci left: 8.244363e-02	ci right 9.027712e-02	k: 1726	n:20000
OR8H2   20000 perm   3 sec   (6012 perm/sec)   p_kst 8.630000e-02   p_cons 5.281500e-01   p_joint 1.594500e-01

Outputting figure to mutsig2_images.part000000000123/OR8H2.13_941_20000_0.0863_0.52815_0.15945.png
                gene_name: OR8H2
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.086 
        ci_ks_bounds_left: 0.082 
       ci_ks_bounds_right: 0.090 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 4 percent done.
OR5T1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.268928e-02	ci left: 3.468072e-01	ci right 3.656766e-01	k: 3562	n:10000
Cons ci ratio: 5.658335e-02	ci left: 3.150282e-01	ci right 3.334743e-01	k: 3242	n:10000
KS ci ratio: 5.810217e-02	ci left: 3.036194e-01	ci right 3.218898e-01	k: 3127	n:10000
OR5T1   10000 perm   2 sec   (6387 perm/sec)   p_kst 3.127000e-01   p_cons 3.242000e-01   p_joint 3.562000e-01

Outputting figure to mutsig2_images.part000000000123/OR5T1.11_985_10000_0.3127_0.3242_0.3562.png
                gene_name: OR5T1
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 5 percent done.
OR9G9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.266631e-02	ci left: 3.470060e-01	ci right 3.658777e-01	k: 3564	n:10000
Cons ci ratio: 1.024032e-01	ci left: 1.212176e-01	ci right 1.344000e-01	k: 1277	n:10000
KS ci ratio: 3.192327e-02	ci left: 5.915247e-01	ci right 6.108164e-01	k: 6012	n:10000
OR9G9   10000 perm   2 sec   (6369 perm/sec)   p_kst 6.012000e-01   p_cons 1.277000e-01   p_joint 3.564000e-01

Joint ci ratio: 3.973372e-02	ci left: 3.207974e-01	ci right 3.338528e-01	k: 6546	n:20000
Cons ci ratio: 7.449765e-02	ci left: 1.170516e-01	ci right 1.261587e-01	k: 2431	n:20000
KS ci ratio: 2.246392e-02	ci left: 5.967311e-01	ci right 6.103388e-01	k: 12071	n:20000
OR9G9   20000 perm   3 sec   (5742 perm/sec)   p_kst 6.035500e-01   p_cons 1.215500e-01   p_joint 3.273000e-01

Outputting figure to mutsig2_images.part000000000123/OR9G9.11_920_20000_0.60355_0.12155_0.3273.png
                gene_name: OR9G9
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 7 percent done.
OR5J2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.353717e-02	ci left: 8.872890e-01	ci right 8.994808e-01	k: 8935	n:10000
Cons ci ratio: 1.738284e-02	ci left: 8.282899e-01	ci right 8.429141e-01	k: 8357	n:10000
KS ci ratio: 2.233612e-02	ci left: 7.463458e-01	ci right 7.633055e-01	k: 7549	n:10000
OR5J2   10000 perm   1 sec   (6896 perm/sec)   p_kst 7.549000e-01   p_cons 8.357000e-01   p_joint 8.935000e-01

Outputting figure to mutsig2_images.part000000000123/OR5J2.10_941_10000_0.7549_0.8357_0.8935.png
                gene_name: OR5J2
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 8 percent done.
OR8J3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.988626e-01	ci left: 3.367125e-02	ci right 4.120130e-02	k: 373	n:10000
Cons ci ratio: 6.587477e-02	ci left: 2.528084e-01	ci right 2.701307e-01	k: 2614	n:10000
KS ci ratio: 3.289572e-01	ci left: 1.169777e-02	ci right 1.639161e-02	k: 139	n:10000
OR8J3   10000 perm   1 sec   (6724 perm/sec)   p_kst 1.390000e-02   p_cons 2.614000e-01   p_joint 3.730000e-02

Joint ci ratio: 1.034758e-01	ci left: 6.347548e-02	ci right 7.045106e-02	k: 1338	n:20000
Cons ci ratio: 4.935896e-02	ci left: 2.337967e-01	ci right 2.456790e-01	k: 4794	n:20000
KS ci ratio: 2.347484e-01	ci left: 1.213498e-02	ci right 1.540863e-02	k: 274	n:20000
OR8J3   20000 perm   3 sec   (6010 perm/sec)   p_kst 1.370000e-02   p_cons 2.397000e-01   p_joint 6.690000e-02

Joint ci ratio: 1.008634e-01	ci left: 4.551066e-02	ci right 5.037737e-02	k: 1437	n:30000
Cons ci ratio: 3.880313e-02	ci left: 2.488829e-01	ci right 2.587648e-01	k: 7614	n:30000
KS ci ratio: 1.959307e-01	ci left: 1.187572e-02	ci right 1.448649e-02	k: 394	n:30000
OR8J3   30000 perm   5 sec   (5731 perm/sec)   p_kst 1.313333e-02   p_cons 2.538000e-01   p_joint 4.790000e-02

Joint ci ratio: 8.935971e-02	ci left: 4.384527e-02	ci right 4.797098e-02	k: 1835	n:40000
Cons ci ratio: 3.355655e-02	ci left: 2.500877e-01	ci right 2.586480e-01	k: 10174	n:40000
KS ci ratio: 1.707803e-01	ci left: 1.188895e-02	ci right 1.413257e-02	k: 519	n:40000
OR8J3   40000 perm   7 sec   (5543 perm/sec)   p_kst 1.297500e-02   p_cons 2.543500e-01   p_joint 4.587500e-02

Joint ci ratio: 9.695171e-02	ci left: 3.012298e-02	ci right 3.321171e-02	k: 1582	n:50000
Cons ci ratio: 2.992045e-02	ci left: 2.517212e-01	ci right 2.593872e-01	k: 12777	n:50000
KS ci ratio: 1.532293e-01	ci left: 1.192926e-02	ci right 1.392788e-02	k: 645	n:50000
OR8J3   50000 perm   9 sec   (5404 perm/sec)   p_kst 1.290000e-02   p_cons 2.555400e-01   p_joint 3.164000e-02

Joint ci ratio: 1.120224e-01	ci left: 1.887851e-02	ci right 2.113492e-02	k: 1199	n:60000
Cons ci ratio: 2.735738e-02	ci left: 2.514497e-01	ci right 2.584407e-01	k: 15296	n:60000
KS ci ratio: 1.414774e-01	ci left: 1.173889e-02	ci right 1.354204e-02	k: 757	n:60000
OR8J3   60000 perm   11 sec   (5279 perm/sec)   p_kst 1.261667e-02   p_cons 2.549333e-01   p_joint 1.998333e-02

Joint ci ratio: 9.740374e-02	ci left: 2.151167e-02	ci right 2.372814e-02	k: 1582	n:70000
Cons ci ratio: 2.531137e-02	ci left: 2.519592e-01	ci right 2.584326e-01	k: 17863	n:70000
KS ci ratio: 1.300428e-01	ci left: 1.198036e-02	ci right 1.366038e-02	k: 896	n:70000
OR8J3   70000 perm   14 sec   (5163 perm/sec)   p_kst 1.280000e-02   p_cons 2.551857e-01   p_joint 2.260000e-02

Joint ci ratio: 9.437023e-02	ci left: 2.011525e-02	ci right 2.211969e-02	k: 1688	n:80000
Cons ci ratio: 2.367896e-02	ci left: 2.521318e-01	ci right 2.581860e-01	k: 20412	n:80000
KS ci ratio: 1.217127e-01	ci left: 1.202038e-02	ci right 1.359025e-02	k: 1023	n:80000
OR8J3   80000 perm   16 sec   (5064 perm/sec)   p_kst 1.278750e-02   p_cons 2.551500e-01   p_joint 2.110000e-02

Joint ci ratio: 9.391818e-02	ci left: 1.809632e-02	ci right 1.989043e-02	k: 1708	n:90000
Cons ci ratio: 2.231015e-02	ci left: 2.525533e-01	ci right 2.582625e-01	k: 22986	n:90000
KS ci ratio: 1.151577e-01	ci left: 1.197862e-02	ci right 1.345304e-02	k: 1143	n:90000
OR8J3   90000 perm   18 sec   (4971 perm/sec)   p_kst 1.270000e-02   p_cons 2.554000e-01   p_joint 1.897778e-02

Joint ci ratio: 9.127591e-02	ci left: 1.728273e-02	ci right 1.894539e-02	k: 1810	n:100000
Cons ci ratio: 2.118148e-02	ci left: 2.524103e-01	ci right 2.578239e-01	k: 25511	n:100000
KS ci ratio: 1.088633e-01	ci left: 1.210271e-02	ci right 1.350576e-02	k: 1279	n:100000
OR8J3   100000 perm   20 sec   (4883 perm/sec)   p_kst 1.279000e-02   p_cons 2.551100e-01   p_joint 1.810000e-02

Joint ci ratio: 1.047815e-01	ci left: 1.190490e-02	ci right 1.323007e-02	k: 1381	n:110000
Cons ci ratio: 2.018040e-02	ci left: 2.528249e-01	ci right 2.579880e-01	k: 28094	n:110000
KS ci ratio: 1.072858e-01	ci left: 1.134719e-02	ci right 1.264237e-02	k: 1318	n:110000
OR8J3   110000 perm   23 sec   (4799 perm/sec)   p_kst 1.198182e-02   p_cons 2.554000e-01   p_joint 1.255455e-02

Joint ci ratio: 9.128830e-02	ci left: 1.444202e-02	ci right 1.583156e-02	k: 1815	n:120000
Cons ci ratio: 1.927190e-02	ci left: 2.539063e-01	ci right 2.588555e-01	k: 30765	n:120000
KS ci ratio: 1.034083e-01	ci left: 1.122104e-02	ci right 1.245272e-02	k: 1419	n:120000
OR8J3   120000 perm   25 sec   (4721 perm/sec)   p_kst 1.182500e-02   p_cons 2.563750e-01   p_joint 1.512500e-02

Joint ci ratio: 9.083630e-02	ci left: 1.348113e-02	ci right 1.477144e-02	k: 1835	n:130000
Cons ci ratio: 1.853860e-02	ci left: 2.535372e-01	ci right 2.582891e-01	k: 33268	n:130000
KS ci ratio: 9.894007e-02	ci left: 1.134012e-02	ci right 1.252796e-02	k: 1550	n:130000
OR8J3   130000 perm   28 sec   (4644 perm/sec)   p_kst 1.192308e-02   p_cons 2.559077e-01   p_joint 1.411538e-02

Outputting figure to mutsig2_images.part000000000123/OR8J3.10_950_130000_0.011923_0.25591_0.014115.png
                gene_name: OR8J3
               theta_stop: 0.099 
                    nperm: 130000 
                     p_ks: 0.012 
        ci_ks_bounds_left: 0.011 
       ci_ks_bounds_right: 0.013 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.014 
     ci_joint_bounds_left: 0.013 
    ci_joint_bounds_right: 0.015 

Current progress: 9 percent done.
OR5M9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.011761e-02	ci left: 1.518829e-01	ci right 1.663162e-01	k: 1590	n:10000
Cons ci ratio: 4.972318e-02	ci left: 3.736565e-01	ci right 3.928116e-01	k: 3832	n:10000
KS ci ratio: 1.289403e-01	ci left: 7.912021e-02	ci right 9.012318e-02	k: 845	n:10000
OR5M9   10000 perm   2 sec   (6491 perm/sec)   p_kst 8.450000e-02   p_cons 3.832000e-01   p_joint 1.590000e-01

Joint ci ratio: 6.292600e-02	ci left: 1.573622e-01	ci right 1.676361e-01	k: 3249	n:20000
Cons ci ratio: 3.384615e-02	ci left: 3.945963e-01	ci right 4.082324e-01	k: 8028	n:20000
KS ci ratio: 9.082502e-02	ci left: 8.131738e-02	ci right 8.910371e-02	k: 1703	n:20000
OR5M9   20000 perm   3 sec   (5841 perm/sec)   p_kst 8.515000e-02   p_cons 4.014000e-01   p_joint 1.624500e-01

Outputting figure to mutsig2_images.part000000000123/OR5M9.9_935_20000_0.08515_0.4014_0.16245.png
                gene_name: OR5M9
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.085 
        ci_ks_bounds_left: 0.081 
       ci_ks_bounds_right: 0.089 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 11 percent done.
OR5W2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.151475e-02	ci left: 2.798308e-01	ci right 2.976924e-01	k: 2887	n:10000
Cons ci ratio: 4.940915e-02	ci left: 3.766417e-01	ci right 3.958246e-01	k: 3862	n:10000
KS ci ratio: 6.434124e-02	ci left: 2.619103e-01	ci right 2.794235e-01	k: 2706	n:10000
OR5W2   10000 perm   2 sec   (6459 perm/sec)   p_kst 2.706000e-01   p_cons 3.862000e-01   p_joint 2.887000e-01

Outputting figure to mutsig2_images.part000000000123/OR5W2.9_935_10000_0.2706_0.3862_0.2887.png
                gene_name: OR5W2
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 12 percent done.
OR5I1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.881310e-02	ci left: 6.397543e-01	ci right 6.585588e-01	k: 6492	n:10000
Cons ci ratio: 4.850438e-02	ci left: 3.854004e-01	ci right 4.046607e-01	k: 3950	n:10000
KS ci ratio: 2.027211e-02	ci left: 7.808694e-01	ci right 7.969620e-01	k: 7890	n:10000
OR5I1   10000 perm   2 sec   (6572 perm/sec)   p_kst 7.890000e-01   p_cons 3.950000e-01   p_joint 6.492000e-01

Outputting figure to mutsig2_images.part000000000123/OR5I1.8_948_10000_0.789_0.395_0.6492.png
                gene_name: OR5I1
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 14 percent done.
OR6K3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.322234e-02	ci left: 8.917993e-01	ci right 9.037679e-01	k: 8979	n:10000
Cons ci ratio: 2.824610e-02	ci left: 6.488086e-01	ci right 6.674992e-01	k: 6582	n:10000
KS ci ratio: 1.894323e-02	ci left: 8.028818e-01	ci right 8.183368e-01	k: 8107	n:10000
OR6K3   10000 perm   1 sec   (6883 perm/sec)   p_kst 8.107000e-01   p_cons 6.582000e-01   p_joint 8.979000e-01

Outputting figure to mutsig2_images.part000000000123/OR6K3.8_950_10000_0.8107_0.6582_0.8979.png
                gene_name: OR6K3
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 15 percent done.
OR8B2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.058215e-02	ci left: 7.757010e-01	ci right 7.919333e-01	k: 7839	n:10000
Cons ci ratio: 4.124628e-02	ci left: 4.646716e-01	ci right 4.843433e-01	k: 4745	n:10000
KS ci ratio: 3.318984e-02	ci left: 5.726613e-01	ci right 5.920907e-01	k: 5824	n:10000
OR8B2   10000 perm   2 sec   (6473 perm/sec)   p_kst 5.824000e-01   p_cons 4.745000e-01   p_joint 7.839000e-01

Outputting figure to mutsig2_images.part000000000123/OR8B2.8_945_10000_0.5824_0.4745_0.7839.png
                gene_name: OR8B2
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.79 

Current progress: 16 percent done.
OR8I2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.772199e-02	ci left: 3.931666e-01	ci right 4.124900e-01	k: 4028	n:10000
Cons ci ratio: 2.243869e-02	ci left: 7.446266e-01	ci right 7.616257e-01	k: 7532	n:10000
KS ci ratio: 9.596083e-02	ci left: 1.360954e-01	ci right 1.499133e-01	k: 1429	n:10000
OR8I2   10000 perm   2 sec   (6456 perm/sec)   p_kst 1.429000e-01   p_cons 7.532000e-01   p_joint 4.028000e-01

Outputting figure to mutsig2_images.part000000000123/OR8I2.8_936_10000_0.1429_0.7532_0.4028.png
                gene_name: OR8I2
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 18 percent done.
OR5K1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.710561e-02	ci left: 6.672307e-01	ci right 6.856665e-01	k: 6765	n:10000
Cons ci ratio: 4.794086e-02	ci left: 3.909759e-01	ci right 4.102820e-01	k: 4006	n:10000
KS ci ratio: 1.150929e-02	ci left: 9.152306e-01	ci right 9.259229e-01	k: 9207	n:10000
OR5K1   10000 perm   1 sec   (7428 perm/sec)   p_kst 9.207000e-01   p_cons 4.006000e-01   p_joint 6.765000e-01

Outputting figure to mutsig2_images.part000000000123/OR5K1.7_931_10000_0.9207_0.4006_0.6765.png
                gene_name: OR5K1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 19 percent done.
OR5L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.607595e-02	ci left: 4.101016e-01	ci right 4.295451e-01	k: 4198	n:10000
Cons ci ratio: 2.649463e-02	ci left: 6.772033e-01	ci right 6.954880e-01	k: 6864	n:10000
KS ci ratio: 7.116072e-02	ci left: 2.244469e-01	ci right 2.411090e-01	k: 2327	n:10000
OR5L1   10000 perm   2 sec   (6513 perm/sec)   p_kst 2.327000e-01   p_cons 6.864000e-01   p_joint 4.198000e-01

Outputting figure to mutsig2_images.part000000000123/OR5L1.7_940_10000_0.2327_0.6864_0.4198.png
                gene_name: OR5L1
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 20 percent done.
OR5M11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.411746e-02	ci left: 7.165376e-01	ci right 7.341309e-01	k: 7254	n:10000
Cons ci ratio: 4.267076e-02	ci left: 4.477990e-01	ci right 4.674257e-01	k: 4576	n:10000
KS ci ratio: 3.765680e-02	ci left: 5.101534e-01	ci right 5.298350e-01	k: 5200	n:10000
OR5M11   10000 perm   1 sec   (6929 perm/sec)   p_kst 5.200000e-01   p_cons 4.576000e-01   p_joint 7.254000e-01

Outputting figure to mutsig2_images.part000000000123/OR5M11.7_921_10000_0.52_0.4576_0.7254.png
                gene_name: OR5M11
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 22 percent done.
OR5T3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.922441e-02	ci left: 2.343232e-01	ci right 2.512269e-01	k: 2427	n:10000
Cons ci ratio: 5.851007e-02	ci left: 3.006442e-01	ci right 3.188667e-01	k: 3097	n:10000
KS ci ratio: 8.176015e-02	ci left: 1.792031e-01	ci right 1.945798e-01	k: 1868	n:10000
OR5T3   10000 perm   2 sec   (6493 perm/sec)   p_kst 1.868000e-01   p_cons 3.097000e-01   p_joint 2.427000e-01

Outputting figure to mutsig2_images.part000000000123/OR5T3.7_1026_10000_0.1868_0.3097_0.2427.png
                gene_name: OR5T3
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 23 percent done.
OR6K2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.972347e-02	ci left: 6.253754e-01	ci right 6.443460e-01	k: 6349	n:10000
Cons ci ratio: 3.208325e-02	ci left: 5.891158e-01	ci right 6.084267e-01	k: 5988	n:10000
KS ci ratio: 5.300083e-02	ci left: 3.441241e-01	ci right 3.629613e-01	k: 3535	n:10000
OR6K2   10000 perm   1 sec   (6995 perm/sec)   p_kst 3.535000e-01   p_cons 5.988000e-01   p_joint 6.349000e-01

Outputting figure to mutsig2_images.part000000000123/OR6K2.7_979_10000_0.3535_0.5988_0.6349.png
                gene_name: OR6K2
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.64 

Current progress: 24 percent done.
OR6N1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.410536e-02	ci left: 7.167396e-01	ci right 7.343289e-01	k: 7256	n:10000
Cons ci ratio: 1.766676e-02	ci left: 8.237123e-01	ci right 8.384943e-01	k: 8312	n:10000
KS ci ratio: 5.182757e-02	ci left: 3.543616e-01	ci right 3.733178e-01	k: 3638	n:10000
OR6N1   10000 perm   2 sec   (6511 perm/sec)   p_kst 3.638000e-01   p_cons 8.312000e-01   p_joint 7.256000e-01

Outputting figure to mutsig2_images.part000000000123/OR6N1.7_942_10000_0.3638_0.8312_0.7256.png
                gene_name: OR6N1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 26 percent done.
OR8B4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.191527e-01	ci left: 2.759554e-02	ci right 3.448123e-02	k: 309	n:10000
Cons ci ratio: 1.548769e-01	ci left: 5.552036e-02	ci right 6.493785e-02	k: 601	n:10000
KS ci ratio: 1.405162e-01	ci left: 6.710566e-02	ci right 7.734523e-02	k: 721	n:10000
OR8B4   10000 perm   2 sec   (6263 perm/sec)   p_kst 7.210000e-02   p_cons 6.010000e-02   p_joint 3.090000e-02

Joint ci ratio: 1.087026e-01	ci left: 5.772211e-02	ci right 6.440620e-02	k: 1220	n:20000
Cons ci ratio: 1.127405e-01	ci left: 5.377780e-02	ci right 6.025175e-02	k: 1139	n:20000
KS ci ratio: 9.716747e-02	ci left: 7.158212e-02	ci right 7.894193e-02	k: 1504	n:20000
OR8B4   20000 perm   4 sec   (5604 perm/sec)   p_kst 7.520000e-02   p_cons 5.695000e-02   p_joint 6.100000e-02

Joint ci ratio: 1.091317e-01	ci left: 3.897881e-02	ci right 4.351058e-02	k: 1236	n:30000
Cons ci ratio: 9.145886e-02	ci left: 5.505507e-02	ci right 6.036432e-02	k: 1730	n:30000
KS ci ratio: 7.891301e-02	ci left: 7.299309e-02	ci right 7.902266e-02	k: 2279	n:30000
OR8B4   30000 perm   6 sec   (5377 perm/sec)   p_kst 7.596667e-02   p_cons 5.766667e-02   p_joint 4.120000e-02

Joint ci ratio: 9.758604e-02	ci left: 3.687970e-02	ci right 4.068763e-02	k: 1550	n:40000
Cons ci ratio: 8.060522e-02	ci left: 5.357041e-02	ci right 5.809435e-02	k: 2232	n:40000
KS ci ratio: 6.898148e-02	ci left: 7.211740e-02	ci right 7.729454e-02	k: 2987	n:40000
OR8B4   40000 perm   8 sec   (5216 perm/sec)   p_kst 7.467500e-02   p_cons 5.580000e-02   p_joint 3.875000e-02

Outputting figure to mutsig2_images.part000000000123/OR8B4.7_932_40000_0.074675_0.0558_0.03875.png
                gene_name: OR8B4
               theta_stop: 0.098 
                    nperm: 40000 
                     p_ks: 0.075 
        ci_ks_bounds_left: 0.072 
       ci_ks_bounds_right: 0.077 
                   p_cons: 0.056 
      ci_cons_bounds_left: 0.054 
     ci_cons_bounds_right: 0.058 
                  p_joint: 0.039 
     ci_joint_bounds_left: 0.037 
    ci_joint_bounds_right: 0.041 

Current progress: 27 percent done.
OR8H1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.481118e-02	ci left: 3.290250e-01	ci right 3.476693e-01	k: 3383	n:10000
Cons ci ratio: 9.533935e-02	ci left: 1.376631e-01	ci right 1.515446e-01	k: 1445	n:10000
KS ci ratio: 2.969783e-02	ci left: 6.257775e-01	ci right 6.447437e-01	k: 6353	n:10000
OR8H1   10000 perm   2 sec   (6574 perm/sec)   p_kst 6.353000e-01   p_cons 1.445000e-01   p_joint 3.383000e-01

Outputting figure to mutsig2_images.part000000000123/OR8H1.7_938_10000_0.6353_0.1445_0.3383.png
                gene_name: OR8H1
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 28 percent done.
OR8H3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.472717e-03	ci left: 9.402467e-01	ci right 9.492921e-01	k: 9449	n:10000
Cons ci ratio: 3.621882e-02	ci left: 5.295704e-01	ci right 5.492067e-01	k: 5394	n:10000
KS ci ratio: 1.963746e-02	ci left: 7.914146e-01	ci right 8.072106e-01	k: 7994	n:10000
OR8H3   10000 perm   2 sec   (6242 perm/sec)   p_kst 7.994000e-01   p_cons 5.394000e-01   p_joint 9.449000e-01

Outputting figure to mutsig2_images.part000000000123/OR8H3.7_943_10000_0.7994_0.5394_0.9449.png
                gene_name: OR8H3
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 30 percent done.
OR8K3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.588454e-02	ci left: 1.649446e-01	ci right 1.798468e-01	k: 1723	n:10000
Cons ci ratio: 2.690152e-02	ci left: 6.705543e-01	ci right 6.889408e-01	k: 6798	n:10000
KS ci ratio: 1.164346e-01	ci left: 9.584256e-02	ci right 1.077905e-01	k: 1017	n:10000
OR8K3   10000 perm   2 sec   (6558 perm/sec)   p_kst 1.017000e-01   p_cons 6.798000e-01   p_joint 1.723000e-01

Joint ci ratio: 5.669738e-02	ci left: 1.874020e-01	ci right 1.983874e-01	k: 3857	n:20000
Cons ci ratio: 2.014719e-02	ci left: 6.476616e-01	ci right 6.608935e-01	k: 13086	n:20000
KS ci ratio: 8.210895e-02	ci left: 9.808407e-02	ci right 1.065320e-01	k: 2045	n:20000
OR8K3   20000 perm   3 sec   (5871 perm/sec)   p_kst 1.022500e-01   p_cons 6.543000e-01   p_joint 1.928500e-01

Outputting figure to mutsig2_images.part000000000123/OR8K3.7_941_20000_0.10225_0.6543_0.19285.png
                gene_name: OR8K3
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.098 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 31 percent done.
OR9A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.414772e-02	ci left: 7.160328e-01	ci right 7.336360e-01	k: 7249	n:10000
Cons ci ratio: 4.311172e-02	ci left: 4.427095e-01	ci right 4.623181e-01	k: 4525	n:10000
KS ci ratio: 9.150557e-03	ci left: 9.438819e-01	ci right 9.526547e-01	k: 9484	n:10000
OR9A2   10000 perm   2 sec   (6519 perm/sec)   p_kst 9.484000e-01   p_cons 4.525000e-01   p_joint 7.249000e-01

Outputting figure to mutsig2_images.part000000000123/OR9A2.7_937_10000_0.9484_0.4525_0.7249.png
                gene_name: OR9A2
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 32 percent done.
OR5H6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.054524e-01	ci left: 1.149621e-01	ci right 1.278593e-01	k: 1213	n:10000
Cons ci ratio: 1.689143e-01	ci left: 4.676942e-02	ci right 5.549443e-02	k: 510	n:10000
KS ci ratio: 2.220940e-02	ci left: 7.484697e-01	ci right 7.653804e-01	k: 7570	n:10000
OR5H6   10000 perm   2 sec   (6258 perm/sec)   p_kst 7.570000e-01   p_cons 5.100000e-02   p_joint 1.213000e-01

Joint ci ratio: 7.250885e-02	ci left: 1.228577e-01	ci right 1.321509e-01	k: 2549	n:20000
Cons ci ratio: 1.191363e-01	ci left: 4.828298e-02	ci right 5.444828e-02	k: 1026	n:20000
KS ci ratio: 1.620588e-02	ci left: 7.391510e-01	ci right 7.512777e-01	k: 14905	n:20000
OR5H6   20000 perm   4 sec   (5615 perm/sec)   p_kst 7.452500e-01   p_cons 5.130000e-02   p_joint 1.274500e-01

Joint ci ratio: 5.489755e-02	ci left: 1.412642e-01	ci right 1.492713e-01	k: 4357	n:30000
Cons ci ratio: 9.582486e-02	ci left: 5.029613e-02	ci right 5.539091e-02	k: 1584	n:30000
KS ci ratio: 1.313976e-02	ci left: 7.429459e-01	ci right 7.528060e-01	k: 22437	n:30000
OR5H6   30000 perm   6 sec   (5366 perm/sec)   p_kst 7.479000e-01   p_cons 5.280000e-02   p_joint 1.452333e-01

Outputting figure to mutsig2_images.part000000000123/OR5H6.6_982_30000_0.7479_0.0528_0.14523.png
                gene_name: OR5H6
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.053 
      ci_cons_bounds_left: 0.050 
     ci_cons_bounds_right: 0.055 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 34 percent done.
OR5M8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.893355e-01	ci left: 3.719780e-02	ci right 4.507236e-02	k: 410	n:10000
Cons ci ratio: 1.193694e-02	ci left: 9.095681e-01	ci right 9.205886e-01	k: 9152	n:10000
KS ci ratio: 4.420964e-01	ci left: 6.081359e-03	ci right 9.614411e-03	k: 77	n:10000
OR5M8   10000 perm   2 sec   (6575 perm/sec)   p_kst 7.700000e-03   p_cons 9.152000e-01   p_joint 4.100000e-02

Joint ci ratio: 1.420067e-01	ci left: 3.408842e-02	ci right 3.934738e-02	k: 733	n:20000
Cons ci ratio: 8.630554e-03	ci left: 9.076317e-01	ci right 9.155482e-01	k: 18233	n:20000
KS ci ratio: 3.029783e-01	ci left: 7.043292e-03	ci right 9.602748e-03	k: 165	n:20000
OR5M8   20000 perm   3 sec   (5881 perm/sec)   p_kst 8.250000e-03   p_cons 9.116500e-01   p_joint 3.665000e-02

Joint ci ratio: 1.350911e-01	ci left: 2.545300e-02	ci right 2.917264e-02	k: 818	n:30000
Cons ci ratio: 7.337731e-03	ci left: 9.015245e-01	ci right 9.081969e-01	k: 27147	n:30000
KS ci ratio: 2.449152e-01	ci left: 7.429710e-03	ci right 9.533810e-03	k: 253	n:30000
OR5M8   30000 perm   5 sec   (5524 perm/sec)   p_kst 8.433333e-03   p_cons 9.049000e-01   p_joint 2.726667e-02

Joint ci ratio: 1.071946e-01	ci left: 3.061330e-02	ci right 3.410502e-02	k: 1293	n:40000
Cons ci ratio: 6.360949e-03	ci left: 9.018059e-01	ci right 9.075852e-01	k: 36189	n:40000
KS ci ratio: 2.179107e-01	ci left: 7.150356e-03	ci right 8.922184e-03	k: 320	n:40000
OR5M8   40000 perm   7 sec   (5364 perm/sec)   p_kst 8.000000e-03   p_cons 9.047250e-01   p_joint 3.232500e-02

Joint ci ratio: 9.407484e-02	ci left: 3.197902e-02	ci right 3.515543e-02	k: 1677	n:50000
Cons ci ratio: 5.686840e-03	ci left: 9.021939e-01	ci right 9.073590e-01	k: 45240	n:50000
KS ci ratio: 1.927977e-01	ci left: 7.409151e-03	ci right 9.008737e-03	k: 409	n:50000
OR5M8   50000 perm   10 sec   (5237 perm/sec)   p_kst 8.180000e-03   p_cons 9.048000e-01   p_joint 3.354000e-02

Joint ci ratio: 9.567481e-02	ci left: 2.591300e-02	ci right 2.853300e-02	k: 1632	n:60000
Cons ci ratio: 4.954889e-03	ci left: 9.102444e-01	ci right 9.147822e-01	k: 54752	n:60000
KS ci ratio: 1.747506e-01	ci left: 7.589587e-03	ci right 9.058568e-03	k: 498	n:60000
OR5M8   60000 perm   12 sec   (5128 perm/sec)   p_kst 8.300000e-03   p_cons 9.125333e-01   p_joint 2.720000e-02

Joint ci ratio: 8.275657e-02	ci left: 2.977039e-02	ci right 3.235439e-02	k: 2173	n:70000
Cons ci ratio: 4.809357e-03	ci left: 9.024864e-01	ci right 9.068514e-01	k: 63328	n:70000
KS ci ratio: 1.622334e-01	ci left: 7.600078e-03	ci right 8.955443e-03	k: 578	n:70000
OR5M8   70000 perm   14 sec   (5029 perm/sec)   p_kst 8.257143e-03   p_cons 9.046857e-01   p_joint 3.104286e-02

Joint ci ratio: 7.428425e-02	ci left: 3.238656e-02	ci right 3.489741e-02	k: 2690	n:80000
Cons ci ratio: 4.516904e-03	ci left: 9.019251e-01	ci right 9.060206e-01	k: 72319	n:80000
KS ci ratio: 1.509200e-01	ci left: 7.731071e-03	ci right 9.004968e-03	k: 668	n:80000
OR5M8   80000 perm   16 sec   (4930 perm/sec)   p_kst 8.350000e-03   p_cons 9.039875e-01   p_joint 3.362500e-02

Joint ci ratio: 7.042652e-02	ci left: 3.210456e-02	ci right 3.445898e-02	k: 2994	n:90000
Cons ci ratio: 4.252254e-03	ci left: 9.023034e-01	ci right 9.061594e-01	k: 81382	n:90000
KS ci ratio: 1.431181e-01	ci left: 7.674739e-03	ci right 8.868392e-03	k: 743	n:90000
OR5M8   90000 perm   19 sec   (4845 perm/sec)   p_kst 8.255556e-03   p_cons 9.042444e-01   p_joint 3.326667e-02

Joint ci ratio: 8.331049e-02	ci left: 2.075686e-02	ci right 2.257104e-02	k: 2165	n:100000
Cons ci ratio: 4.037391e-03	ci left: 9.022583e-01	ci right 9.059183e-01	k: 90410	n:100000
KS ci ratio: 1.361619e-01	ci left: 7.660021e-03	ci right 8.788783e-03	k: 821	n:100000
OR5M8   100000 perm   21 sec   (4765 perm/sec)   p_kst 8.210000e-03   p_cons 9.041000e-01   p_joint 2.165000e-02

Joint ci ratio: 7.992517e-02	ci left: 2.054399e-02	ci right 2.226319e-02	k: 2353	n:110000
Cons ci ratio: 3.854533e-03	ci left: 9.021156e-01	ci right 9.056085e-01	k: 99426	n:110000
KS ci ratio: 1.291217e-01	ci left: 7.772307e-03	ci right 8.853858e-03	k: 913	n:110000
OR5M8   110000 perm   23 sec   (4686 perm/sec)   p_kst 8.300000e-03   p_cons 9.038727e-01   p_joint 2.139091e-02

Joint ci ratio: 7.406906e-02	ci left: 2.196285e-02	ci right 2.366032e-02	k: 2736	n:120000
Cons ci ratio: 3.686483e-03	ci left: 9.023781e-01	ci right 9.057190e-01	k: 108487	n:120000
KS ci ratio: 1.232569e-01	ci left: 7.842893e-03	ci right 8.881077e-03	k: 1002	n:120000
OR5M8   120000 perm   26 sec   (4611 perm/sec)   p_kst 8.350000e-03   p_cons 9.040583e-01   p_joint 2.280000e-02

Joint ci ratio: 6.791758e-02	ci left: 2.413538e-02	ci right 2.583975e-02	k: 3247	n:130000
Cons ci ratio: 3.235512e-03	ci left: 9.171469e-01	ci right 9.201267e-01	k: 119424	n:130000
KS ci ratio: 1.175831e-01	ci left: 7.978233e-03	ci right 8.982339e-03	k: 1101	n:130000
OR5M8   130000 perm   29 sec   (4534 perm/sec)   p_kst 8.469231e-03   p_cons 9.186462e-01   p_joint 2.497692e-02

Joint ci ratio: 6.312404e-02	ci left: 2.596027e-02	ci right 2.765940e-02	k: 3752	n:140000
Cons ci ratio: 3.124876e-03	ci left: 9.168602e-01	ci right 9.197368e-01	k: 128563	n:140000
KS ci ratio: 1.131507e-01	ci left: 8.018804e-03	ci right 8.987432e-03	k: 1189	n:140000
OR5M8   140000 perm   31 sec   (4459 perm/sec)   p_kst 8.492857e-03   p_cons 9.183071e-01   p_joint 2.680000e-02

Joint ci ratio: 6.176193e-02	ci left: 2.534497e-02	ci right 2.696674e-02	k: 3922	n:150000
Cons ci ratio: 3.017042e-03	ci left: 9.170032e-01	ci right 9.197806e-01	k: 137760	n:150000
KS ci ratio: 1.090555e-01	ci left: 8.074039e-03	ci right 9.011773e-03	k: 1280	n:150000
OR5M8   150000 perm   34 sec   (4389 perm/sec)   p_kst 8.533333e-03   p_cons 9.184000e-01   p_joint 2.614667e-02

Joint ci ratio: 6.139787e-02	ci left: 2.408042e-02	ci right 2.561186e-02	k: 3974	n:160000
Cons ci ratio: 2.923669e-03	ci left: 9.169220e-01	ci right 9.196128e-01	k: 146924	n:160000
KS ci ratio: 1.059215e-01	ci left: 8.037716e-03	ci right 8.942730e-03	k: 1357	n:160000
OR5M8   160000 perm   37 sec   (4306 perm/sec)   p_kst 8.481250e-03   p_cons 9.182750e-01   p_joint 2.483750e-02

Joint ci ratio: 5.804251e-02	ci left: 2.537046e-02	ci right 2.689281e-02	k: 4441	n:170000
Cons ci ratio: 2.833786e-03	ci left: 9.171004e-01	ci right 9.197088e-01	k: 156130	n:170000
KS ci ratio: 1.027904e-01	ci left: 8.046132e-03	ci right 8.923695e-03	k: 1441	n:170000
OR5M8   170000 perm   40 sec   (4242 perm/sec)   p_kst 8.476471e-03   p_cons 9.184118e-01   p_joint 2.612353e-02

Joint ci ratio: 5.265376e-02	ci left: 2.908511e-02	ci right 3.066341e-02	k: 5376	n:180000
Cons ci ratio: 2.758545e-03	ci left: 9.168852e-01	ci right 9.194235e-01	k: 165269	n:180000
KS ci ratio: 9.414959e-02	ci left: 9.089564e-03	ci right 9.993005e-03	k: 1716	n:180000
OR5M8   180000 perm   43 sec   (4182 perm/sec)   p_kst 9.533333e-03   p_cons 9.181611e-01   p_joint 2.986667e-02

Outputting figure to mutsig2_images.part000000000123/OR5M8.6_940_180000_0.0095333_0.91816_0.029867.png
                gene_name: OR5M8
               theta_stop: 0.094 
                    nperm: 180000 
                     p_ks: 0.0095 
        ci_ks_bounds_left: 0.0091 
       ci_ks_bounds_right: 0.0100 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.030 
     ci_joint_bounds_left: 0.029 
    ci_joint_bounds_right: 0.031 

Current progress: 35 percent done.
OR5T2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.616684e-02	ci left: 2.013622e-01	ci right 2.174074e-01	k: 2093	n:10000
Cons ci ratio: 1.060498e-01	ci left: 1.137899e-01	ci right 1.266323e-01	k: 1201	n:10000
KS ci ratio: 4.283441e-02	ci left: 4.459028e-01	ci right 4.655230e-01	k: 4557	n:10000
OR5T2   10000 perm   1 sec   (7299 perm/sec)   p_kst 4.557000e-01   p_cons 1.201000e-01   p_joint 2.093000e-01

Joint ci ratio: 5.096100e-02	ci left: 2.224481e-01	ci right 2.341310e-01	k: 4565	n:20000
Cons ci ratio: 7.273787e-02	ci left: 1.221687e-01	ci right 1.314401e-01	k: 2535	n:20000
KS ci ratio: 3.030021e-02	ci left: 4.486298e-01	ci right 4.624831e-01	k: 9111	n:20000
OR5T2   20000 perm   3 sec   (6423 perm/sec)   p_kst 4.555500e-01   p_cons 1.267500e-01   p_joint 2.282500e-01

Outputting figure to mutsig2_images.part000000000123/OR5T2.6_1079_20000_0.45555_0.12675_0.22825.png
                gene_name: OR5T2
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 36 percent done.
OR6Y1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.659211e-02	ci left: 5.244645e-01	ci right 5.441155e-01	k: 5343	n:10000
Cons ci ratio: 7.239779e-02	ci left: 2.184255e-01	ci right 2.349340e-01	k: 2266	n:10000
KS ci ratio: 1.139871e-02	ci left: 9.166731e-01	ci right 9.272795e-01	k: 9221	n:10000
OR6Y1   10000 perm   2 sec   (6440 perm/sec)   p_kst 9.221000e-01   p_cons 2.266000e-01   p_joint 5.343000e-01

Outputting figure to mutsig2_images.part000000000123/OR6Y1.6_980_10000_0.9221_0.2266_0.5343.png
                gene_name: OR6Y1
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 38 percent done.
OR8A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.696987e-02	ci left: 8.349054e-01	ci right 8.492947e-01	k: 8422	n:10000
Cons ci ratio: 3.883525e-02	ci left: 4.947505e-01	ci right 5.144469e-01	k: 5046	n:10000
KS ci ratio: 2.761474e-02	ci left: 6.589740e-01	ci right 6.775279e-01	k: 6683	n:10000
OR8A1   10000 perm   1 sec   (6921 perm/sec)   p_kst 6.683000e-01   p_cons 5.046000e-01   p_joint 8.422000e-01

Outputting figure to mutsig2_images.part000000000123/OR8A1.6_984_10000_0.6683_0.5046_0.8422.png
                gene_name: OR8A1
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 39 percent done.
OR8B8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.075815e-01	ci left: 1.108601e-01	ci right 1.235638e-01	k: 1171	n:10000
Cons ci ratio: 1.518144e-01	ci left: 5.773721e-02	ci right 6.731959e-02	k: 624	n:10000
KS ci ratio: 3.958796e-02	ci left: 4.851533e-01	ci right 5.048496e-01	k: 4950	n:10000
OR8B8   10000 perm   2 sec   (6564 perm/sec)   p_kst 4.950000e-01   p_cons 6.240000e-02   p_joint 1.171000e-01

Joint ci ratio: 5.312942e-02	ci left: 2.082339e-01	ci right 2.196494e-01	k: 4278	n:20000
Cons ci ratio: 1.097109e-01	ci left: 5.669910e-02	ci right 6.332954e-02	k: 1199	n:20000
KS ci ratio: 2.796986e-02	ci left: 4.884969e-01	ci right 5.024045e-01	k: 9909	n:20000
OR8B8   20000 perm   3 sec   (5850 perm/sec)   p_kst 4.954500e-01   p_cons 5.995000e-02   p_joint 2.139000e-01

Joint ci ratio: 5.081394e-02	ci left: 1.613105e-01	ci right 1.697543e-01	k: 4965	n:30000
Cons ci ratio: 8.995198e-02	ci left: 5.684923e-02	ci right 6.223646e-02	k: 1785	n:30000
KS ci ratio: 2.272170e-02	ci left: 4.923259e-01	ci right 5.036745e-01	k: 14940	n:30000
OR8B8   30000 perm   5 sec   (5573 perm/sec)   p_kst 4.980000e-01   p_cons 5.950000e-02   p_joint 1.655000e-01

Outputting figure to mutsig2_images.part000000000123/OR8B8.6_939_30000_0.498_0.0595_0.1655.png
                gene_name: OR8B8
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.059 
      ci_cons_bounds_left: 0.057 
     ci_cons_bounds_right: 0.062 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 41 percent done.
OR8D4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.375972e-02	ci left: 2.654732e-01	ci right 2.830585e-01	k: 2742	n:10000
Cons ci ratio: 2.575267e-02	ci left: 6.893987e-01	ci right 7.074856e-01	k: 6985	n:10000
KS ci ratio: 9.131491e-02	ci left: 1.484485e-01	ci right 1.627527e-01	k: 1555	n:10000
OR8D4   10000 perm   1 sec   (6937 perm/sec)   p_kst 1.555000e-01   p_cons 6.985000e-01   p_joint 2.742000e-01

Outputting figure to mutsig2_images.part000000000123/OR8D4.6_947_10000_0.1555_0.6985_0.2742.png
                gene_name: OR8D4
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 42 percent done.
OR8J1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.065741e-02	ci left: 2.855770e-01	ci right 3.035428e-01	k: 2945	n:10000
Cons ci ratio: 7.852074e-02	ci left: 1.916074e-01	ci right 2.073681e-01	k: 1994	n:10000
KS ci ratio: 6.151475e-02	ci left: 2.798308e-01	ci right 2.976924e-01	k: 2887	n:10000
OR8J1   10000 perm   1 sec   (7271 perm/sec)   p_kst 2.887000e-01   p_cons 1.994000e-01   p_joint 2.945000e-01

Outputting figure to mutsig2_images.part000000000123/OR8J1.6_953_10000_0.2887_0.1994_0.2945.png
                gene_name: OR8J1
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 43 percent done.
OR8K5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.277720e-01	ci left: 1.178961e-02	ci right 1.649967e-02	k: 140	n:10000
Cons ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
KS ci ratio: 3.818818e-02	ci left: 5.031509e-01	ci right 5.228415e-01	k: 5130	n:10000
OR8K5   10000 perm   2 sec   (6406 perm/sec)   p_kst 5.130000e-01   p_cons 1.000000e-04   p_joint 1.400000e-02

Joint ci ratio: 3.833774e-01	ci left: 4.205484e-03	ci right 6.242447e-03	k: 103	n:20000
Cons ci ratio: 1.959755e+00	ci left: 3.093467e-05	ci right 4.383005e-04	k: 3	n:20000
KS ci ratio: 2.671741e-02	ci left: 5.113979e-01	ci right 5.252968e-01	k: 10367	n:20000
OR8K5   20000 perm   4 sec   (5537 perm/sec)   p_kst 5.183500e-01   p_cons 1.500000e-04   p_joint 5.150000e-03

Joint ci ratio: 3.616908e-01	ci left: 3.196122e-03	ci right 4.635909e-03	k: 116	n:30000
Cons ci ratio: 1.752902e+00	ci left: 3.633000e-05	ci right 3.413508e-04	k: 4	n:30000
KS ci ratio: 2.229555e-02	ci left: 5.017922e-01	ci right 5.131397e-01	k: 15224	n:30000
OR8K5   30000 perm   6 sec   (5328 perm/sec)   p_kst 5.074667e-01   p_cons 1.333333e-04   p_joint 3.866667e-03

Joint ci ratio: 1.761795e-01	ci left: 1.114722e-02	ci right 1.332445e-02	k: 488	n:40000
Cons ci ratio: 1.306503e+00	ci left: 8.634963e-05	ci right 3.940415e-04	k: 8	n:40000
KS ci ratio: 1.930457e-02	ci left: 5.026628e-01	ci right 5.124861e-01	k: 20303	n:40000
OR8K5   40000 perm   8 sec   (5219 perm/sec)   p_kst 5.075750e-01   p_cons 2.000000e-04   p_joint 1.220000e-02

Joint ci ratio: 1.918563e-01	ci left: 7.485326e-03	ci right 9.092548e-03	k: 413	n:50000
Cons ci ratio: 1.087060e+00	ci left: 1.240175e-04	ci right 4.191941e-04	k: 12	n:50000
KS ci ratio: 1.640512e-02	ci left: 5.287352e-01	ci right 5.375010e-01	k: 26656	n:50000
OR8K5   50000 perm   10 sec   (5095 perm/sec)   p_kst 5.331200e-01   p_cons 2.400000e-04   p_joint 8.260000e-03

Joint ci ratio: 1.936454e-01	ci left: 6.126308e-03	ci right 7.455406e-03	k: 406	n:60000
Cons ci ratio: 9.798612e-01	ci left: 1.399296e-04	ci right 4.123035e-04	k: 15	n:60000
KS ci ratio: 1.496239e-02	ci left: 5.295651e-01	ci right 5.375650e-01	k: 32014	n:60000
OR8K5   60000 perm   12 sec   (5003 perm/sec)   p_kst 5.335667e-01   p_cons 2.500000e-04   p_joint 6.766667e-03

Joint ci ratio: 1.468894e-01	ci left: 9.331199e-03	ci right 1.082412e-02	k: 704	n:70000
Cons ci ratio: 8.764072e-01	ci left: 1.634254e-04	ci right 4.238370e-04	k: 19	n:70000
KS ci ratio: 1.390695e-02	ci left: 5.279093e-01	ci right 5.353166e-01	k: 37213	n:70000
OR8K5   70000 perm   14 sec   (4918 perm/sec)   p_kst 5.316143e-01   p_cons 2.714286e-04   p_joint 1.005714e-02

Joint ci ratio: 1.453282e-01	ci left: 8.357177e-03	ci right 9.678798e-03	k: 720	n:80000
Cons ci ratio: 8.000416e-01	ci left: 1.822588e-04	ci right 4.313601e-04	k: 23	n:80000
KS ci ratio: 1.300068e-02	ci left: 5.284600e-01	ci right 5.353877e-01	k: 42554	n:80000
OR8K5   80000 perm   17 sec   (4830 perm/sec)   p_kst 5.319250e-01   p_cons 2.875000e-04   p_joint 9.000000e-03

Joint ci ratio: 1.449968e-01	ci left: 7.471181e-03	ci right 8.649747e-03	k: 724	n:90000
Cons ci ratio: 7.542870e-01	ci left: 1.887202e-04	ci right 4.232607e-04	k: 26	n:90000
KS ci ratio: 1.225479e-02	ci left: 5.287558e-01	ci right 5.352866e-01	k: 47882	n:90000
OR8K5   90000 perm   19 sec   (4717 perm/sec)   p_kst 5.320222e-01   p_cons 2.888889e-04   p_joint 8.044444e-03

Joint ci ratio: 1.448546e-01	ci left: 6.743152e-03	ci right 7.805728e-03	k: 726	n:100000
Cons ci ratio: 7.278165e-01	ci left: 1.860658e-04	ci right 4.046527e-04	k: 28	n:100000
KS ci ratio: 1.163136e-02	ci left: 5.286914e-01	ci right 5.348867e-01	k: 53179	n:100000
OR8K5   100000 perm   22 sec   (4642 perm/sec)   p_kst 5.317900e-01   p_cons 2.800000e-04   p_joint 7.260000e-03

Joint ci ratio: 1.522427e-01	ci left: 5.534651e-03	ci right 6.455324e-03	k: 658	n:110000
Cons ci ratio: 7.155900e-01	ci left: 1.765683e-04	ci right 3.786040e-04	k: 29	n:110000
KS ci ratio: 1.107589e-02	ci left: 5.294734e-01	ci right 5.353795e-01	k: 58567	n:110000
OR8K5   110000 perm   24 sec   (4564 perm/sec)   p_kst 5.324273e-01   p_cons 2.636364e-04   p_joint 5.981818e-03

Joint ci ratio: 1.531008e-01	ci left: 5.017222e-03	ci right 5.856951e-03	k: 651	n:120000
Cons ci ratio: 6.721764e-01	ci left: 1.893047e-04	ci right 3.861808e-04	k: 33	n:120000
KS ci ratio: 1.061063e-02	ci left: 5.293053e-01	ci right 5.349598e-01	k: 63856	n:120000
OR8K5   120000 perm   27 sec   (4495 perm/sec)   p_kst 5.321333e-01   p_cons 2.750000e-04   p_joint 5.425000e-03

Joint ci ratio: 1.538461e-01	ci left: 4.586821e-03	ci right 5.358592e-03	k: 645	n:130000
Cons ci ratio: 6.358126e-01	ci left: 2.004032e-04	ci right 3.922837e-04	k: 37	n:130000
KS ci ratio: 1.019065e-02	ci left: 5.295985e-01	ci right 5.350308e-01	k: 69201	n:130000
OR8K5   130000 perm   29 sec   (4424 perm/sec)   p_kst 5.323154e-01   p_cons 2.846154e-04   p_joint 4.961538e-03

Joint ci ratio: 1.529251e-01	ci left: 4.314093e-03	ci right 5.035229e-03	k: 653	n:140000
Cons ci ratio: 6.197157e-01	ci left: 1.980988e-04	ci right 3.807968e-04	k: 39	n:140000
KS ci ratio: 9.816885e-03	ci left: 5.298536e-01	ci right 5.350879e-01	k: 74546	n:140000
OR8K5   140000 perm   32 sec   (4358 perm/sec)   p_kst 5.324714e-01   p_cons 2.785714e-04   p_joint 4.664286e-03

Joint ci ratio: 1.811128e-01	ci left: 2.831349e-03	ci right 3.401459e-03	k: 466	n:150000
Cons ci ratio: 5.977067e-01	ci left: 2.018066e-04	ci right 3.784600e-04	k: 42	n:150000
KS ci ratio: 9.638995e-03	ci left: 5.218623e-01	ci right 5.269235e-01	k: 78659	n:150000
OR8K5   150000 perm   35 sec   (4286 perm/sec)   p_kst 5.243933e-01   p_cons 2.800000e-04   p_joint 3.106667e-03

Joint ci ratio: 1.803575e-01	ci left: 2.678239e-03	ci right 3.215023e-03	k: 470	n:160000
Cons ci ratio: 5.977122e-01	ci left: 1.891933e-04	ci right 3.548074e-04	k: 42	n:160000
KS ci ratio: 9.326719e-03	ci left: 5.222745e-01	ci right 5.271746e-01	k: 83956	n:160000
OR8K5   160000 perm   38 sec   (4225 perm/sec)   p_kst 5.247250e-01   p_cons 2.625000e-04   p_joint 2.937500e-03

Joint ci ratio: 1.845453e-01	ci left: 2.402775e-03	ci right 2.896782e-03	k: 449	n:170000
Cons ci ratio: 6.197317e-01	ci left: 1.631391e-04	ci right 3.136002e-04	k: 39	n:170000
KS ci ratio: 9.051052e-03	ci left: 5.221933e-01	ci right 5.269470e-01	k: 89177	n:170000
OR8K5   170000 perm   41 sec   (4165 perm/sec)   p_kst 5.245706e-01   p_cons 2.294118e-04   p_joint 2.641176e-03

Joint ci ratio: 1.601682e-01	ci left: 3.050974e-03	ci right 3.587442e-03	k: 596	n:180000
Cons ci ratio: 6.121297e-01	ci left: 1.587634e-04	ci right 3.025914e-04	k: 40	n:180000
KS ci ratio: 8.788183e-03	ci left: 5.227066e-01	ci right 5.273260e-01	k: 94503	n:180000
OR8K5   180000 perm   44 sec   (4108 perm/sec)   p_kst 5.250167e-01   p_cons 2.222222e-04   p_joint 3.311111e-03

Joint ci ratio: 1.616834e-01	ci left: 2.834807e-03	ci right 3.338438e-03	k: 585	n:190000
Cons ci ratio: 6.121335e-01	ci left: 1.504072e-04	ci right 2.866662e-04	k: 40	n:190000
KS ci ratio: 8.554349e-03	ci left: 5.227358e-01	ci right 5.272319e-01	k: 99747	n:190000
OR8K5   190000 perm   47 sec   (4052 perm/sec)   p_kst 5.249842e-01   p_cons 2.105263e-04   p_joint 3.078947e-03

Joint ci ratio: 1.574413e-01	ci left: 2.846680e-03	ci right 3.337897e-03	k: 617	n:200000
Cons ci ratio: 6.121369e-01	ci left: 1.428867e-04	ci right 2.723334e-04	k: 40	n:200000
KS ci ratio: 8.343173e-03	ci left: 5.224685e-01	ci right 5.268508e-01	k: 104932	n:200000
OR8K5   200000 perm   50 sec   (3997 perm/sec)   p_kst 5.246600e-01   p_cons 2.000000e-04   p_joint 3.085000e-03

Joint ci ratio: 1.549580e-01	ci left: 2.802634e-03	ci right 3.277914e-03	k: 637	n:210000
Cons ci ratio: 5.842951e-01	ci left: 1.522443e-04	ci right 2.812658e-04	k: 44	n:210000
KS ci ratio: 8.143085e-03	ci left: 5.224614e-01	ci right 5.267379e-01	k: 110166	n:210000
OR8K5   210000 perm   53 sec   (3944 perm/sec)   p_kst 5.246000e-01   p_cons 2.095238e-04   p_joint 3.033333e-03

Joint ci ratio: 1.536460e-01	ci left: 2.723303e-03	ci right 3.180858e-03	k: 648	n:220000
Cons ci ratio: 5.842980e-01	ci left: 1.453239e-04	ci right 2.684815e-04	k: 44	n:220000
KS ci ratio: 7.952531e-03	ci left: 5.227197e-01	ci right 5.268978e-01	k: 115458	n:220000
OR8K5   220000 perm   57 sec   (3884 perm/sec)   p_kst 5.248091e-01   p_cons 2.000000e-04   p_joint 2.945455e-03

Joint ci ratio: 1.474090e-01	ci left: 2.839221e-03	ci right 3.295184e-03	k: 704	n:230000
Cons ci ratio: 5.383902e-01	ci left: 1.688570e-04	ci right 2.964725e-04	k: 52	n:230000
KS ci ratio: 7.783162e-03	ci left: 5.224174e-01	ci right 5.265037e-01	k: 120626	n:230000
OR8K5   230000 perm   60 sec   (3833 perm/sec)   p_kst 5.244609e-01   p_cons 2.260870e-04   p_joint 3.060870e-03

Joint ci ratio: 1.514578e-01	ci left: 2.572490e-03	ci right 2.997992e-03	k: 667	n:240000
Cons ci ratio: 5.191539e-01	ci left: 1.762622e-04	ci right 3.029922e-04	k: 56	n:240000
KS ci ratio: 7.613793e-03	ci left: 5.228205e-01	ci right 5.268205e-01	k: 125957	n:240000
OR8K5   240000 perm   63 sec   (3785 perm/sec)   p_kst 5.248208e-01   p_cons 2.333333e-04   p_joint 2.779167e-03

Joint ci ratio: 1.593094e-01	ci left: 2.223506e-03	ci right 2.612174e-03	k: 603	n:250000
Cons ci ratio: 5.102793e-01	ci left: 1.761719e-04	ci right 2.999036e-04	k: 58	n:250000
KS ci ratio: 7.467459e-03	ci left: 5.223601e-01	ci right 5.262794e-01	k: 131080	n:250000
OR8K5   250000 perm   67 sec   (3731 perm/sec)   p_kst 5.243200e-01   p_cons 2.320000e-04   p_joint 2.412000e-03

Joint ci ratio: 1.576256e-01	ci left: 2.186000e-03	ci right 2.563691e-03	k: 616	n:260000
Cons ci ratio: 5.102816e-01	ci left: 1.693959e-04	ci right 2.883692e-04	k: 58	n:260000
KS ci ratio: 7.319072e-03	ci left: 5.226282e-01	ci right 5.264712e-01	k: 136383	n:260000
OR8K5   260000 perm   71 sec   (3683 perm/sec)   p_kst 5.245500e-01   p_cons 2.230769e-04   p_joint 2.369231e-03

Joint ci ratio: 1.541651e-01	ci left: 2.204697e-03	ci right 2.576483e-03	k: 644	n:270000
Cons ci ratio: 4.899410e-01	ci left: 1.793043e-04	ci right 2.985250e-04	k: 63	n:270000
KS ci ratio: 7.185003e-03	ci left: 5.224734e-01	ci right 5.262446e-01	k: 141577	n:270000
OR8K5   270000 perm   74 sec   (3637 perm/sec)   p_kst 5.243593e-01   p_cons 2.333333e-04   p_joint 2.385185e-03

Joint ci ratio: 1.527540e-01	ci left: 2.167166e-03	ci right 2.528972e-03	k: 656	n:280000
Cons ci ratio: 4.824609e-01	ci left: 1.791674e-04	ci right 2.958757e-04	k: 65	n:280000
KS ci ratio: 7.056474e-03	ci left: 5.224410e-01	ci right 5.261442e-01	k: 146802	n:280000
OR8K5   280000 perm   78 sec   (3593 perm/sec)   p_kst 5.242929e-01   p_cons 2.321429e-04   p_joint 2.342857e-03

Joint ci ratio: 1.502593e-01	ci left: 2.165422e-03	ci right 2.520502e-03	k: 678	n:290000
Cons ci ratio: 4.753133e-01	ci left: 1.790529e-04	ci right 2.933965e-04	k: 67	n:290000
KS ci ratio: 6.933789e-03	ci left: 5.224701e-01	ci right 5.261088e-01	k: 152044	n:290000
OR8K5   290000 perm   82 sec   (3546 perm/sec)   p_kst 5.242897e-01   p_cons 2.310345e-04   p_joint 2.337931e-03

Joint ci ratio: 1.485215e-01	ci left: 2.144579e-03	ci right 2.491813e-03	k: 694	n:300000
Cons ci ratio: 4.651626e-01	ci left: 1.818992e-04	ci right 2.947936e-04	k: 70	n:300000
KS ci ratio: 6.819065e-03	ci left: 5.223677e-01	ci right 5.259452e-01	k: 157247	n:300000
OR8K5   300000 perm   86 sec   (3501 perm/sec)   p_kst 5.241567e-01   p_cons 2.333333e-04   p_joint 2.313333e-03

Joint ci ratio: 1.461234e-01	ci left: 2.146858e-03	ci right 2.488358e-03	k: 717	n:310000
Cons ci ratio: 4.619220e-01	ci left: 1.788803e-04	ci right 2.888844e-04	k: 71	n:310000
KS ci ratio: 6.712587e-03	ci left: 5.220691e-01	ci right 5.255885e-01	k: 162387	n:310000
OR8K5   310000 perm   90 sec   (3454 perm/sec)   p_kst 5.238290e-01   p_cons 2.290323e-04   p_joint 2.312903e-03

Joint ci ratio: 1.476829e-01	ci left: 2.034608e-03	ci right 2.362011e-03	k: 702	n:320000
Cons ci ratio: 4.587482e-01	ci left: 1.760527e-04	ci right 2.833420e-04	k: 72	n:320000
KS ci ratio: 6.610071e-03	ci left: 5.218553e-01	ci right 5.253193e-01	k: 167548	n:320000
OR8K5   320000 perm   94 sec   (3411 perm/sec)   p_kst 5.235875e-01   p_cons 2.250000e-04   p_joint 2.193750e-03

Joint ci ratio: 1.466463e-01	ci left: 2.002138e-03	ci right 2.321857e-03	k: 712	n:330000
Cons ci ratio: 4.409810e-01	ci left: 1.868400e-04	ci right 2.949839e-04	k: 78	n:330000
KS ci ratio: 6.510607e-03	ci left: 5.217700e-01	ci right 5.251811e-01	k: 172747	n:330000
OR8K5   330000 perm   98 sec   (3369 perm/sec)   p_kst 5.234758e-01   p_cons 2.363636e-04   p_joint 2.157576e-03

Joint ci ratio: 1.466509e-01	ci left: 1.943247e-03	ci right 2.253572e-03	k: 712	n:340000
Cons ci ratio: 4.409826e-01	ci left: 1.813446e-04	ci right 2.863081e-04	k: 78	n:340000
KS ci ratio: 6.413156e-03	ci left: 5.218725e-01	ci right 5.252330e-01	k: 178008	n:340000
OR8K5   340000 perm   102 sec   (3326 perm/sec)   p_kst 5.235529e-01   p_cons 2.294118e-04   p_joint 2.094118e-03

Joint ci ratio: 1.488684e-01	ci left: 1.829936e-03	ci right 2.126978e-03	k: 691	n:350000
Cons ci ratio: 4.328403e-01	ci left: 1.837918e-04	ci right 2.876365e-04	k: 81	n:350000
KS ci ratio: 6.321258e-03	ci left: 5.218666e-01	ci right 5.251787e-01	k: 183233	n:350000
OR8K5   350000 perm   107 sec   (3286 perm/sec)   p_kst 5.235229e-01   p_cons 2.314286e-04   p_joint 1.974286e-03

Joint ci ratio: 1.508511e-01	ci left: 1.730973e-03	ci right 2.016030e-03	k: 673	n:360000
Cons ci ratio: 4.302257e-01	ci left: 1.811624e-04	ci right 2.827245e-04	k: 82	n:360000
KS ci ratio: 6.234102e-03	ci left: 5.217891e-01	ci right 5.250549e-01	k: 188432	n:360000
OR8K5   360000 perm   111 sec   (3249 perm/sec)   p_kst 5.234222e-01   p_cons 2.277778e-04   p_joint 1.869444e-03

Joint ci ratio: 1.536197e-01	ci left: 1.621788e-03	ci right 1.894218e-03	k: 649	n:370000
Cons ci ratio: 4.276579e-01	ci left: 1.786769e-04	ci right 2.780763e-04	k: 83	n:370000
KS ci ratio: 6.149355e-03	ci left: 5.218054e-01	ci right 5.250267e-01	k: 193664	n:370000
OR8K5   370000 perm   115 sec   (3210 perm/sec)   p_kst 5.234162e-01   p_cons 2.243243e-04   p_joint 1.754054e-03

Joint ci ratio: 1.548209e-01	ci left: 1.553805e-03	ci right 1.817045e-03	k: 639	n:380000
Cons ci ratio: 4.226561e-01	ci left: 1.786748e-04	ci right 2.765817e-04	k: 85	n:380000
KS ci ratio: 6.065861e-03	ci left: 5.219947e-01	ci right 5.251733e-01	k: 198962	n:380000
OR8K5   380000 perm   120 sec   (3172 perm/sec)   p_kst 5.235842e-01   p_cons 2.236842e-04   p_joint 1.681579e-03

Joint ci ratio: 1.551890e-01	ci left: 1.506567e-03	ci right 1.762467e-03	k: 636	n:390000
Cons ci ratio: 4.131561e-01	ci left: 1.832713e-04	ci right 2.808187e-04	k: 89	n:390000
KS ci ratio: 5.987123e-03	ci left: 5.220541e-01	ci right 5.251917e-01	k: 204213	n:390000
OR8K5   390000 perm   124 sec   (3137 perm/sec)   p_kst 5.236231e-01   p_cons 2.282051e-04   p_joint 1.630769e-03

Joint ci ratio: 1.603150e-01	ci left: 1.372842e-03	ci right 1.614472e-03	k: 596	n:400000
Cons ci ratio: 4.131573e-01	ci left: 1.786895e-04	ci right 2.737984e-04	k: 89	n:400000
KS ci ratio: 5.911580e-03	ci left: 5.220933e-01	ci right 5.251913e-01	k: 209457	n:400000
OR8K5   400000 perm   129 sec   (3101 perm/sec)   p_kst 5.236425e-01   p_cons 2.225000e-04   p_joint 1.490000e-03

Joint ci ratio: 1.585979e-01	ci left: 1.369800e-03	ci right 1.608066e-03	k: 609	n:410000
Cons ci ratio: 4.042703e-01	ci left: 1.830843e-04	ci right 2.778741e-04	k: 93	n:410000
KS ci ratio: 5.840597e-03	ci left: 5.219796e-01	ci right 5.250396e-01	k: 214639	n:410000
OR8K5   410000 perm   134 sec   (3066 perm/sec)   p_kst 5.235098e-01   p_cons 2.268293e-04   p_joint 1.485366e-03

Joint ci ratio: 1.563079e-01	ci left: 1.378355e-03	ci right 1.614323e-03	k: 627	n:420000
Cons ci ratio: 4.000371e-01	ci left: 1.830053e-04	ci right 2.764992e-04	k: 95	n:420000
KS ci ratio: 5.768228e-03	ci left: 5.222073e-01	ci right 5.252305e-01	k: 219962	n:420000
OR8K5   420000 perm   138 sec   (3034 perm/sec)   p_kst 5.237190e-01   p_cons 2.261905e-04   p_joint 1.492857e-03

Joint ci ratio: 1.544739e-01	ci left: 1.379827e-03	ci right 1.613019e-03	k: 642	n:430000
Cons ci ratio: 4.000382e-01	ci left: 1.787493e-04	ci right 2.700691e-04	k: 95	n:430000
KS ci ratio: 5.700128e-03	ci left: 5.222803e-01	ci right 5.252682e-01	k: 225223	n:430000
OR8K5   430000 perm   143 sec   (3001 perm/sec)   p_kst 5.237744e-01   p_cons 2.209302e-04   p_joint 1.493023e-03

Joint ci ratio: 1.538785e-01	ci left: 1.359392e-03	ci right 1.588163e-03	k: 647	n:440000
Cons ci ratio: 3.979714e-01	ci left: 1.767314e-04	ci right 2.664309e-04	k: 96	n:440000
KS ci ratio: 5.635412e-03	ci left: 5.222594e-01	ci right 5.252131e-01	k: 230444	n:440000
OR8K5   440000 perm   148 sec   (2968 perm/sec)   p_kst 5.237364e-01   p_cons 2.181818e-04   p_joint 1.470455e-03

Joint ci ratio: 1.522429e-01	ci left: 1.359103e-03	ci right 1.585172e-03	k: 661	n:450000
Cons ci ratio: 3.959362e-01	ci left: 1.748044e-04	ci right 2.629533e-04	k: 97	n:450000
KS ci ratio: 5.573671e-03	ci left: 5.221662e-01	ci right 5.250869e-01	k: 235632	n:450000
OR8K5   450000 perm   153 sec   (2936 perm/sec)   p_kst 5.236267e-01   p_cons 2.155556e-04   p_joint 1.468889e-03

Joint ci ratio: 1.506582e-01	ci left: 1.358838e-03	ci right 1.582299e-03	k: 675	n:460000
Cons ci ratio: 3.639166e-01	ci left: 2.064049e-04	ci right 3.000796e-04	k: 115	n:460000
KS ci ratio: 5.512065e-03	ci left: 5.222446e-01	ci right 5.251333e-01	k: 240897	n:460000
OR8K5   460000 perm   158 sec   (2902 perm/sec)   p_kst 5.236891e-01   p_cons 2.500000e-04   p_joint 1.467391e-03

Joint ci ratio: 1.506606e-01	ci left: 1.329925e-03	ci right 1.548635e-03	k: 675	n:470000
Cons ci ratio: 3.623586e-01	ci left: 2.039468e-04	ci right 2.960160e-04	k: 116	n:470000
KS ci ratio: 5.451550e-03	ci left: 5.224029e-01	ci right 5.252607e-01	k: 246201	n:470000
OR8K5   470000 perm   164 sec   (2871 perm/sec)   p_kst 5.238319e-01   p_cons 2.468085e-04   p_joint 1.436170e-03

Joint ci ratio: 1.493413e-01	ci left: 1.326280e-03	ci right 1.542310e-03	k: 687	n:480000
Cons ci ratio: 3.593009e-01	ci left: 2.034868e-04	ci right 2.943919e-04	k: 118	n:480000
KS ci ratio: 5.394967e-03	ci left: 5.223714e-01	ci right 5.251992e-01	k: 251417	n:480000
OR8K5   480000 perm   169 sec   (2842 perm/sec)   p_kst 5.237854e-01   p_cons 2.458333e-04   p_joint 1.431250e-03

Joint ci ratio: 1.165818e-01	ci left: 2.167804e-03	ci right 2.438135e-03	k: 1127	n:490000
Cons ci ratio: 3.900140e-01	ci left: 1.660520e-04	ci right 2.482125e-04	k: 100	n:490000
KS ci ratio: 5.338363e-03	ci left: 5.225045e-01	ci right 5.253033e-01	k: 256713	n:490000
OR8K5   490000 perm   174 sec   (2811 perm/sec)   p_kst 5.239041e-01   p_cons 2.040816e-04   p_joint 2.300000e-03

Joint ci ratio: 1.174750e-01	ci left: 2.091438e-03	ci right 2.354383e-03	k: 1110	n:500000
Cons ci ratio: 3.900148e-01	ci left: 1.627309e-04	ci right 2.432483e-04	k: 100	n:500000
KS ci ratio: 5.284330e-03	ci left: 5.225546e-01	ci right 5.253252e-01	k: 261970	n:500000
OR8K5   500000 perm   180 sec   (2784 perm/sec)   p_kst 5.239400e-01   p_cons 2.000000e-04   p_joint 2.220000e-03

Joint ci ratio: 1.160725e-01	ci left: 2.101825e-03	ci right 2.362705e-03	k: 1137	n:510000
Cons ci ratio: 3.825131e-01	ci left: 1.666216e-04	ci right 2.470798e-04	k: 104	n:510000
KS ci ratio: 5.234393e-03	ci left: 5.223654e-01	ci right 5.251088e-01	k: 267106	n:510000
OR8K5   510000 perm   185 sec   (2760 perm/sec)   p_kst 5.237373e-01   p_cons 2.039216e-04   p_joint 2.229412e-03

Joint ci ratio: 1.151658e-01	ci left: 2.095019e-03	ci right 2.352885e-03	k: 1155	n:520000
Cons ci ratio: 3.825138e-01	ci left: 1.634173e-04	ci right 2.423283e-04	k: 104	n:520000
KS ci ratio: 5.183067e-03	ci left: 5.224511e-01	ci right 5.251679e-01	k: 272381	n:520000
OR8K5   520000 perm   190 sec   (2735 perm/sec)   p_kst 5.238096e-01   p_cons 2.000000e-04   p_joint 2.221154e-03

Joint ci ratio: 1.140368e-01	ci left: 2.097643e-03	ci right 2.353130e-03	k: 1178	n:530000
Cons ci ratio: 3.771634e-01	ci left: 1.654540e-04	ci right 2.439544e-04	k: 107	n:530000
KS ci ratio: 5.133920e-03	ci left: 5.224657e-01	ci right 5.251567e-01	k: 277620	n:530000
OR8K5   530000 perm   196 sec   (2710 perm/sec)   p_kst 5.238113e-01   p_cons 2.018868e-04   p_joint 2.222642e-03

Joint ci ratio: 1.159777e-01	ci left: 1.988646e-03	ci right 2.235263e-03	k: 1139	n:540000
Cons ci ratio: 3.754297e-01	ci left: 1.640667e-04	ci right 2.414630e-04	k: 108	n:540000
KS ci ratio: 5.085673e-03	ci left: 5.225261e-01	ci right 5.251921e-01	k: 282884	n:540000
OR8K5   540000 perm   201 sec   (2685 perm/sec)   p_kst 5.238593e-01   p_cons 2.000000e-04   p_joint 2.109259e-03

Joint ci ratio: 1.150233e-01	ci left: 1.986037e-03	ci right 2.230165e-03	k: 1158	n:550000
Cons ci ratio: 3.737196e-01	ci left: 1.627306e-04	ci right 2.390614e-04	k: 109	n:550000
KS ci ratio: 5.040285e-03	ci left: 5.224336e-01	ci right 5.250752e-01	k: 288065	n:550000
OR8K5   550000 perm   207 sec   (2660 perm/sec)   p_kst 5.237545e-01   p_cons 1.981818e-04   p_joint 2.105455e-03

Joint ci ratio: 1.244126e-01	ci left: 1.659524e-03	ci right 1.881396e-03	k: 990	n:560000
Cons ci ratio: 3.687250e-01	ci left: 1.646821e-04	ci right 2.406471e-04	k: 112	n:560000
KS ci ratio: 4.993714e-03	ci left: 5.225820e-01	ci right 5.251999e-01	k: 293379	n:560000
OR8K5   560000 perm   212 sec   (2638 perm/sec)   p_kst 5.238911e-01   p_cons 2.000000e-04   p_joint 1.767857e-03

Joint ci ratio: 1.264108e-01	ci left: 1.577725e-03	ci right 1.792303e-03	k: 959	n:570000
Cons ci ratio: 3.671046e-01	ci left: 1.633851e-04	ci right 2.383411e-04	k: 113	n:570000
KS ci ratio: 4.950079e-03	ci left: 5.225569e-01	ci right 5.251517e-01	k: 298597	n:570000
OR8K5   570000 perm   218 sec   (2613 perm/sec)   p_kst 5.238544e-01   p_cons 1.982456e-04   p_joint 1.682456e-03

Joint ci ratio: 1.286467e-01	ci left: 1.495437e-03	ci right 1.702695e-03	k: 926	n:580000
Cons ci ratio: 3.578081e-01	ci left: 1.699712e-04	ci right 2.455144e-04	k: 119	n:580000
KS ci ratio: 4.906976e-03	ci left: 5.225930e-01	ci right 5.251654e-01	k: 303850	n:580000
OR8K5   580000 perm   224 sec   (2590 perm/sec)   p_kst 5.238793e-01   p_cons 2.051724e-04   p_joint 1.596552e-03

Joint ci ratio: 1.276184e-01	ci left: 1.494700e-03	ci right 1.700074e-03	k: 941	n:590000
Cons ci ratio: 3.534174e-01	ci left: 1.717209e-04	ci right 2.468903e-04	k: 122	n:590000
KS ci ratio: 4.866649e-03	ci left: 5.224569e-01	ci right 5.250073e-01	k: 309002	n:590000
OR8K5   590000 perm   230 sec   (2567 perm/sec)   p_kst 5.237322e-01   p_cons 2.067797e-04   p_joint 1.594915e-03

Joint ci ratio: 1.275523e-01	ci left: 1.471400e-03	ci right 1.673461e-03	k: 942	n:600000
Cons ci ratio: 3.478066e-01	ci left: 1.749385e-04	ci right 2.500267e-04	k: 126	n:600000
KS ci ratio: 4.825493e-03	ci left: 5.225120e-01	ci right 5.250411e-01	k: 314266	n:600000
OR8K5   600000 perm   236 sec   (2545 perm/sec)   p_kst 5.237767e-01   p_cons 2.100000e-04   p_joint 1.570000e-03

Joint ci ratio: 1.290006e-01	ci left: 1.413955e-03	ci right 1.610500e-03	k: 921	n:610000
Cons ci ratio: 3.464457e-01	ci left: 1.735671e-04	ci right 2.477097e-04	k: 127	n:610000
KS ci ratio: 4.787000e-03	ci left: 5.223949e-01	ci right 5.249032e-01	k: 319426	n:610000
OR8K5   610000 perm   242 sec   (2524 perm/sec)   p_kst 5.236492e-01   p_cons 2.081967e-04   p_joint 1.509836e-03

Joint ci ratio: 1.283762e-01	ci left: 1.405198e-03	ci right 1.599508e-03	k: 930	n:620000
Cons ci ratio: 3.464463e-01	ci left: 1.707676e-04	ci right 2.437145e-04	k: 127	n:620000
KS ci ratio: 4.748031e-03	ci left: 5.224269e-01	ci right 5.249148e-01	k: 324676	n:620000
OR8K5   620000 perm   248 sec   (2502 perm/sec)   p_kst 5.236710e-01   p_cons 2.048387e-04   p_joint 1.500000e-03

Joint ci ratio: 1.270186e-01	ci left: 1.413625e-03	ci right 1.606878e-03	k: 950	n:630000
Cons ci ratio: 3.411562e-01	ci left: 1.738581e-04	ci right 2.467412e-04	k: 131	n:630000
KS ci ratio: 4.710388e-03	ci left: 5.224166e-01	ci right 5.248848e-01	k: 329900	n:630000
OR8K5   630000 perm   254 sec   (2481 perm/sec)   p_kst 5.236508e-01   p_cons 2.079365e-04   p_joint 1.507937e-03

Joint ci ratio: 1.261595e-01	ci left: 1.411206e-03	ci right 1.602726e-03	k: 963	n:640000
Cons ci ratio: 3.373440e-01	ci left: 1.754298e-04	ci right 2.479711e-04	k: 134	n:640000
KS ci ratio: 4.673407e-03	ci left: 5.224302e-01	ci right 5.248790e-01	k: 335139	n:640000
OR8K5   640000 perm   260 sec   (2460 perm/sec)   p_kst 5.236547e-01   p_cons 2.093750e-04   p_joint 1.504687e-03

Joint ci ratio: 1.251893e-01	ci left: 1.411847e-03	ci right 1.601871e-03	k: 978	n:650000
Cons ci ratio: 3.373446e-01	ci left: 1.727308e-04	ci right 2.441563e-04	k: 134	n:650000
KS ci ratio: 4.637841e-03	ci left: 5.223834e-01	ci right 5.248133e-01	k: 340339	n:650000
OR8K5   650000 perm   266 sec   (2440 perm/sec)   p_kst 5.235985e-01   p_cons 2.061538e-04   p_joint 1.504615e-03

Joint ci ratio: 1.246183e-01	ci left: 1.403665e-03	ci right 1.591663e-03	k: 987	n:660000
Cons ci ratio: 3.348732e-01	ci left: 1.728883e-04	ci right 2.437420e-04	k: 136	n:660000
KS ci ratio: 4.602068e-03	ci left: 5.224472e-01	ci right 5.248586e-01	k: 345611	n:660000
OR8K5   660000 perm   273 sec   (2420 perm/sec)   p_kst 5.236530e-01   p_cons 2.060606e-04   p_joint 1.495455e-03

Joint ci ratio: 1.237448e-01	ci left: 1.402961e-03	ci right 1.589451e-03	k: 1001	n:670000
Cons ci ratio: 3.324553e-01	ci left: 1.730429e-04	ci right 2.433383e-04	k: 138	n:670000
KS ci ratio: 4.567330e-03	ci left: 5.224853e-01	ci right 5.248786e-01	k: 350867	n:670000
OR8K5   670000 perm   279 sec   (2401 perm/sec)   p_kst 5.236821e-01   p_cons 2.059701e-04   p_joint 1.494030e-03

Joint ci ratio: 1.229500e-01	ci left: 1.400857e-03	ci right 1.585784e-03	k: 1014	n:680000
Cons ci ratio: 3.300891e-01	ci left: 1.731947e-04	ci right 2.429447e-04	k: 140	n:680000
KS ci ratio: 4.534395e-03	ci left: 5.224091e-01	ci right 5.247848e-01	k: 356046	n:680000
OR8K5   680000 perm   286 sec   (2382 perm/sec)   p_kst 5.235971e-01   p_cons 2.058824e-04   p_joint 1.491176e-03

Joint ci ratio: 1.232557e-01	ci left: 1.373531e-03	ci right 1.555334e-03	k: 1009	n:690000
Cons ci ratio: 3.266323e-01	ci left: 1.746741e-04	ci right 2.441287e-04	k: 143	n:690000
KS ci ratio: 4.501940e-03	ci left: 5.223599e-01	ci right 5.247182e-01	k: 361242	n:690000
OR8K5   690000 perm   292 sec   (2363 perm/sec)   p_kst 5.235391e-01   p_cons 2.072464e-04   p_joint 1.462319e-03

Joint ci ratio: 1.224702e-01	ci left: 1.371909e-03	ci right 1.552257e-03	k: 1022	n:700000
Cons ci ratio: 3.232820e-01	ci left: 1.761150e-04	ci right 2.452752e-04	k: 146	n:700000
KS ci ratio: 4.469468e-03	ci left: 5.223906e-01	ci right 5.247320e-01	k: 366493	n:700000
OR8K5   700000 perm   299 sec   (2344 perm/sec)   p_kst 5.235614e-01   p_cons 2.085714e-04   p_joint 1.460000e-03

Joint ci ratio: 1.220540e-01	ci left: 1.362144e-03	ci right 1.540555e-03	k: 1029	n:710000
Cons ci ratio: 3.232825e-01	ci left: 1.736344e-04	ci right 2.418207e-04	k: 146	n:710000
KS ci ratio: 4.438190e-03	ci left: 5.223642e-01	ci right 5.246891e-01	k: 371704	n:710000
OR8K5   710000 perm   305 sec   (2326 perm/sec)   p_kst 5.235268e-01   p_cons 2.056338e-04   p_joint 1.449296e-03

Joint ci ratio: 1.221740e-01	ci left: 1.340531e-03	ci right 1.516297e-03	k: 1027	n:720000
Cons ci ratio: 3.211055e-01	ci left: 1.737760e-04	ci right 2.414638e-04	k: 148	n:720000
KS ci ratio: 4.407154e-03	ci left: 5.223845e-01	ci right 5.246931e-01	k: 376948	n:720000
OR8K5   720000 perm   312 sec   (2307 perm/sec)   p_kst 5.235389e-01   p_cons 2.055556e-04   p_joint 1.426389e-03

Joint ci ratio: 1.217608e-01	ci left: 1.331464e-03	ci right 1.505408e-03	k: 1034	n:730000
Cons ci ratio: 3.200336e-01	ci left: 1.726551e-04	ci right 2.396358e-04	k: 149	n:730000
KS ci ratio: 4.378263e-03	ci left: 5.222329e-01	ci right 5.245258e-01	k: 382067	n:730000
OR8K5   730000 perm   319 sec   (2288 perm/sec)   p_kst 5.233795e-01   p_cons 2.041096e-04   p_joint 1.416438e-03

Joint ci ratio: 1.211772e-01	ci left: 1.326574e-03	ci right 1.498989e-03	k: 1044	n:740000
Cons ci ratio: 3.148288e-01	ci left: 1.765406e-04	ci right 2.436906e-04	k: 154	n:740000
KS ci ratio: 4.348236e-03	ci left: 5.222802e-01	ci right 5.245575e-01	k: 387330	n:740000
OR8K5   740000 perm   326 sec   (2269 perm/sec)   p_kst 5.234189e-01   p_cons 2.081081e-04   p_joint 1.410811e-03

Joint ci ratio: 1.204875e-01	ci left: 1.324403e-03	ci right 1.495485e-03	k: 1056	n:750000
Cons ci ratio: 3.128171e-01	ci left: 1.766433e-04	ci right 2.433174e-04	k: 156	n:750000
KS ci ratio: 4.319118e-03	ci left: 5.222916e-01	ci right 5.245536e-01	k: 392567	n:750000
OR8K5   750000 perm   333 sec   (2251 perm/sec)   p_kst 5.234227e-01   p_cons 2.080000e-04   p_joint 1.408000e-03

Joint ci ratio: 1.204316e-01	ci left: 1.308252e-03	ci right 1.477164e-03	k: 1057	n:760000
Cons ci ratio: 3.128175e-01	ci left: 1.743191e-04	ci right 2.401159e-04	k: 156	n:760000
KS ci ratio: 4.291539e-03	ci left: 5.221908e-01	ci right 5.244379e-01	k: 397719	n:760000
OR8K5   760000 perm   340 sec   (2233 perm/sec)   p_kst 5.233145e-01   p_cons 2.052632e-04   p_joint 1.390789e-03

Joint ci ratio: 1.196985e-01	ci left: 1.307638e-03	ci right 1.475370e-03	k: 1070	n:770000
Cons ci ratio: 3.089068e-01	ci left: 1.768448e-04	ci right 2.425962e-04	k: 160	n:770000
KS ci ratio: 4.264404e-03	ci left: 5.221019e-01	ci right 5.243343e-01	k: 402878	n:770000
OR8K5   770000 perm   348 sec   (2215 perm/sec)   p_kst 5.232182e-01   p_cons 2.077922e-04   p_joint 1.389610e-03

Joint ci ratio: 1.193098e-01	ci left: 1.299579e-03	ci right 1.465698e-03	k: 1077	n:780000
Cons ci ratio: 3.070058e-01	ci left: 1.769436e-04	ci right 2.422476e-04	k: 162	n:780000
KS ci ratio: 4.236721e-03	ci left: 5.221396e-01	ci right 5.243577e-01	k: 408134	n:780000
OR8K5   780000 perm   355 sec   (2198 perm/sec)   p_kst 5.232487e-01   p_cons 2.076923e-04   p_joint 1.380769e-03

Joint ci ratio: 1.190898e-01	ci left: 1.288040e-03	ci right 1.452360e-03	k: 1081	n:790000
Cons ci ratio: 3.070062e-01	ci left: 1.747038e-04	ci right 2.391813e-04	k: 162	n:790000
KS ci ratio: 4.210125e-03	ci left: 5.221106e-01	ci right 5.243146e-01	k: 413338	n:790000
OR8K5   790000 perm   362 sec   (2183 perm/sec)   p_kst 5.232127e-01   p_cons 2.050633e-04   p_joint 1.368354e-03

Joint ci ratio: 1.190908e-01	ci left: 1.271939e-03	ci right 1.434206e-03	k: 1081	n:800000
Cons ci ratio: 3.051399e-01	ci left: 1.748280e-04	ci right 2.388829e-04	k: 164	n:800000
KS ci ratio: 4.184401e-03	ci left: 5.220373e-01	ci right 5.242275e-01	k: 418506	n:800000
OR8K5   800000 perm   369 sec   (2167 perm/sec)   p_kst 5.231325e-01   p_cons 2.050000e-04   p_joint 1.351250e-03

Joint ci ratio: 1.204368e-01	ci left: 1.227492e-03	ci right 1.385985e-03	k: 1057	n:810000
Cons ci ratio: 3.042196e-01	ci left: 1.738098e-04	ci right 2.372624e-04	k: 165	n:810000
KS ci ratio: 4.158279e-03	ci left: 5.220696e-01	ci right 5.242463e-01	k: 423758	n:810000
OR8K5   810000 perm   377 sec   (2151 perm/sec)   p_kst 5.231580e-01   p_cons 2.037037e-04   p_joint 1.304938e-03

Joint ci ratio: 1.195361e-01	ci left: 1.231450e-03	ci right 1.389180e-03	k: 1073	n:820000
Cons ci ratio: 3.015072e-01	ci left: 1.750707e-04	ci right 2.383046e-04	k: 168	n:820000
KS ci ratio: 4.133114e-03	ci left: 5.220439e-01	ci right 5.242072e-01	k: 428963	n:820000
OR8K5   820000 perm   384 sec   (2133 perm/sec)   p_kst 5.231256e-01   p_cons 2.048780e-04   p_joint 1.308537e-03

Joint ci ratio: 1.185465e-01	ci left: 1.237654e-03	ci right 1.394775e-03	k: 1091	n:830000
Cons ci ratio: 2.988660e-01	ci left: 1.763038e-04	ci right 2.393193e-04	k: 171	n:830000
KS ci ratio: 4.108034e-03	ci left: 5.220634e-01	ci right 5.242136e-01	k: 434205	n:830000
OR8K5   830000 perm   392 sec   (2118 perm/sec)   p_kst 5.231386e-01   p_cons 2.060241e-04   p_joint 1.314458e-03

Joint ci ratio: 1.174751e-01	ci left: 1.246027e-03	ci right 1.402682e-03	k: 1111	n:840000
Cons ci ratio: 2.962931e-01	ci left: 1.775098e-04	ci right 2.403075e-04	k: 174	n:840000
KS ci ratio: 4.083639e-03	ci left: 5.220538e-01	ci right 5.241912e-01	k: 439423	n:840000
OR8K5   840000 perm   399 sec   (2104 perm/sec)   p_kst 5.231226e-01   p_cons 2.071429e-04   p_joint 1.322619e-03

Joint ci ratio: 1.172124e-01	ci left: 1.237077e-03	ci right 1.392235e-03	k: 1116	n:850000
Cons ci ratio: 2.954504e-01	ci left: 1.765106e-04	ci right 2.387439e-04	k: 175	n:850000
KS ci ratio: 4.059979e-03	ci left: 5.220069e-01	ci right 5.241317e-01	k: 444609	n:850000
OR8K5   850000 perm   407 sec   (2088 perm/sec)   p_kst 5.230694e-01   p_cons 2.058824e-04   p_joint 1.312941e-03

Joint ci ratio: 1.183865e-01	ci left: 1.197864e-03	ci right 1.349713e-03	k: 1094	n:860000
Cons ci ratio: 2.937858e-01	ci left: 1.766118e-04	ci right 2.384648e-04	k: 177	n:860000
KS ci ratio: 4.036961e-03	ci left: 5.219321e-01	ci right 5.240445e-01	k: 449770	n:860000
OR8K5   860000 perm   415 sec   (2074 perm/sec)   p_kst 5.229884e-01   p_cons 2.058140e-04   p_joint 1.272093e-03

Joint ci ratio: 1.202149e-01	ci left: 1.147294e-03	ci right 1.295139e-03	k: 1061	n:870000
Cons ci ratio: 2.921492e-01	ci left: 1.767118e-04	ci right 2.381911e-04	k: 179	n:870000
KS ci ratio: 4.014099e-03	ci left: 5.218877e-01	ci right 5.239880e-01	k: 454956	n:870000
OR8K5   870000 perm   422 sec   (2060 perm/sec)   p_kst 5.229379e-01   p_cons 2.057471e-04   p_joint 1.219540e-03

Joint ci ratio: 1.200461e-01	ci left: 1.137563e-03	ci right 1.283934e-03	k: 1064	n:880000
Cons ci ratio: 2.905395e-01	ci left: 1.768103e-04	ci right 2.379228e-04	k: 181	n:880000
KS ci ratio: 3.990830e-03	ci left: 5.219433e-01	ci right 5.240316e-01	k: 460229	n:880000
OR8K5   880000 perm   430 sec   (2046 perm/sec)   p_kst 5.229875e-01   p_cons 2.056818e-04   p_joint 1.209091e-03

Joint ci ratio: 1.209024e-01	ci left: 1.108434e-03	ci right 1.252147e-03	k: 1049	n:890000
Cons ci ratio: 2.905399e-01	ci left: 1.748237e-04	ci right 2.352495e-04	k: 181	n:890000
KS ci ratio: 3.968042e-03	ci left: 5.219875e-01	ci right 5.240640e-01	k: 465493	n:890000
OR8K5   890000 perm   438 sec   (2031 perm/sec)   p_kst 5.230258e-01   p_cons 2.033708e-04   p_joint 1.178652e-03

Joint ci ratio: 1.199913e-01	ci left: 1.113361e-03	ci right 1.256547e-03	k: 1065	n:900000
Cons ci ratio: 2.889565e-01	ci left: 1.749419e-04	ci right 2.350189e-04	k: 183	n:900000
KS ci ratio: 3.946140e-03	ci left: 5.219675e-01	ci right 5.240324e-01	k: 470700	n:900000
OR8K5   900000 perm   446 sec   (2018 perm/sec)   p_kst 5.230000e-01   p_cons 2.033333e-04   p_joint 1.183333e-03

Joint ci ratio: 1.191557e-01	ci left: 1.117117e-03	ci right 1.259715e-03	k: 1080	n:910000
Cons ci ratio: 2.866292e-01	ci left: 1.760783e-04	ci right 2.359703e-04	k: 186	n:910000
KS ci ratio: 3.924398e-03	ci left: 5.219732e-01	ci right 5.240267e-01	k: 475930	n:910000
OR8K5   910000 perm   454 sec   (2004 perm/sec)   p_kst 5.230000e-01   p_cons 2.043956e-04   p_joint 1.186813e-03

Joint ci ratio: 1.195446e-01	ci left: 1.097592e-03	ci right 1.238188e-03	k: 1073	n:920000
Cons ci ratio: 2.851086e-01	ci left: 1.761824e-04	ci right 2.357347e-04	k: 188	n:920000
KS ci ratio: 3.902212e-03	ci left: 5.220809e-01	ci right 5.241233e-01	k: 481254	n:920000
OR8K5   920000 perm   462 sec   (1990 perm/sec)   p_kst 5.231022e-01   p_cons 2.043478e-04   p_joint 1.166304e-03

Joint ci ratio: 1.198811e-01	ci left: 1.079531e-03	ci right 1.218230e-03	k: 1067	n:930000
Cons ci ratio: 2.828723e-01	ci left: 1.772841e-04	ci right 2.366549e-04	k: 191	n:930000
KS ci ratio: 3.881260e-03	ci left: 5.220757e-01	ci right 5.241070e-01	k: 486475	n:930000
OR8K5   930000 perm   471 sec   (1976 perm/sec)   p_kst 5.230914e-01   p_cons 2.053763e-04   p_joint 1.147312e-03

Joint ci ratio: 1.026876e-01	ci left: 1.468371e-03	ci right 1.628342e-03	k: 1454	n:940000
Cons ci ratio: 2.806878e-01	ci left: 1.783641e-04	ci right 2.375536e-04	k: 194	n:940000
KS ci ratio: 3.860197e-03	ci left: 5.221280e-01	ci right 5.241484e-01	k: 491750	n:940000
OR8K5   940000 perm   479 sec   (1963 perm/sec)   p_kst 5.231383e-01   p_cons 2.063830e-04   p_joint 1.546809e-03

Joint ci ratio: 1.020581e-01	ci left: 1.471377e-03	ci right 1.630634e-03	k: 1472	n:950000
Cons ci ratio: 2.785531e-01	ci left: 1.794231e-04	ci right 2.384318e-04	k: 197	n:950000
KS ci ratio: 3.839400e-03	ci left: 5.221887e-01	ci right 5.241985e-01	k: 497034	n:950000
OR8K5   950000 perm   488 sec   (1949 perm/sec)   p_kst 5.231937e-01   p_cons 2.073684e-04   p_joint 1.549474e-03

Joint ci ratio: 1.110693e-01	ci left: 1.223846e-03	ci right 1.368773e-03	k: 1243	n:960000
Cons ci ratio: 2.488880e-01	ci left: 2.262061e-04	ci right 2.914549e-04	k: 247	n:960000
KS ci ratio: 3.819789e-03	ci left: 5.221368e-01	ci right 5.241360e-01	k: 502211	n:960000
OR8K5   960000 perm   496 sec   (1936 perm/sec)   p_kst 5.231365e-01   p_cons 2.572917e-04   p_joint 1.294792e-03

Joint ci ratio: 1.107142e-01	ci left: 1.219248e-03	ci right 1.363138e-03	k: 1251	n:970000
Cons ci ratio: 2.488883e-01	ci left: 2.238740e-04	ci right 2.884503e-04	k: 247	n:970000
KS ci ratio: 3.800098e-03	ci left: 5.221354e-01	ci right 5.241243e-01	k: 507436	n:970000
OR8K5   970000 perm   504 sec   (1923 perm/sec)   p_kst 5.231299e-01   p_cons 2.546392e-04   p_joint 1.289691e-03

Joint ci ratio: 1.111155e-01	ci left: 1.197877e-03	ci right 1.339791e-03	k: 1242	n:980000
Cons ci ratio: 2.459307e-01	ci left: 2.273325e-04	ci right 2.920081e-04	k: 253	n:980000
KS ci ratio: 3.780910e-03	ci left: 5.221075e-01	ci right 5.240863e-01	k: 512635	n:980000
OR8K5   980000 perm   513 sec   (1911 perm/sec)   p_kst 5.230969e-01   p_cons 2.581633e-04   p_joint 1.267347e-03

Joint ci ratio: 1.105830e-01	ci left: 1.197562e-03	ci right 1.338715e-03	k: 1254	n:990000
Cons ci ratio: 2.449682e-01	ci left: 2.269322e-04	ci right 2.912028e-04	k: 255	n:990000
KS ci ratio: 3.761850e-03	ci left: 5.221014e-01	ci right 5.240702e-01	k: 517855	n:990000
OR8K5   990000 perm   522 sec   (1898 perm/sec)   p_kst 5.230859e-01   p_cons 2.575758e-04   p_joint 1.266667e-03

Joint ci ratio: 1.100147e-01	ci left: 1.198228e-03	ci right 1.338687e-03	k: 1267	n:1000000
Cons ci ratio: 2.444913e-01	ci left: 2.256015e-04	ci right 2.893520e-04	k: 256	n:1000000
KS ci ratio: 3.742497e-03	ci left: 5.221725e-01	ci right 5.241314e-01	k: 523152	n:1000000
OR8K5   1000000 perm   530 sec   (1885 perm/sec)   p_kst 5.231520e-01   p_cons 2.560000e-04   p_joint 1.267000e-03

Joint ci ratio: 1.093696e-01	ci left: 1.200808e-03	ci right 1.340691e-03	k: 1282	n:1010000
Cons ci ratio: 2.426104e-01	ci left: 2.270866e-04	ci right 2.906887e-04	k: 260	n:1010000
KS ci ratio: 3.724187e-03	ci left: 5.221422e-01	ci right 5.240913e-01	k: 528348	n:1010000
OR8K5   1010000 perm   539 sec   (1873 perm/sec)   p_kst 5.231168e-01   p_cons 2.574257e-04   p_joint 1.269307e-03

Joint ci ratio: 8.937707e-02	ci left: 1.798203e-03	ci right 1.967390e-03	k: 1919	n:1020000
Cons ci ratio: 2.403192e-01	ci left: 2.294657e-04	ci right 2.930367e-04	k: 265	n:1020000
KS ci ratio: 3.705654e-03	ci left: 5.221782e-01	ci right 5.241177e-01	k: 533611	n:1020000
OR8K5   1020000 perm   549 sec   (1859 perm/sec)   p_kst 5.231480e-01   p_cons 2.598039e-04   p_joint 1.881373e-03

Joint ci ratio: 8.947131e-02	ci left: 1.776948e-03	ci right 1.944320e-03	k: 1915	n:1030000
Cons ci ratio: 2.380916e-01	ci left: 2.318013e-04	ci right 2.953364e-04	k: 270	n:1030000
KS ci ratio: 3.687883e-03	ci left: 5.221475e-01	ci right 5.240776e-01	k: 538806	n:1030000
OR8K5   1030000 perm   558 sec   (1847 perm/sec)   p_kst 5.231126e-01   p_cons 2.621359e-04   p_joint 1.859223e-03

Joint ci ratio: 8.963630e-02	ci left: 1.753281e-03	ci right 1.918744e-03	k: 1908	n:1040000
Cons ci ratio: 2.376537e-01	ci left: 2.304767e-04	ci right 2.935154e-04	k: 271	n:1040000
KS ci ratio: 3.669991e-03	ci left: 5.221684e-01	ci right 5.240892e-01	k: 544054	n:1040000
OR8K5   1040000 perm   567 sec   (1835 perm/sec)   p_kst 5.231288e-01   p_cons 2.605769e-04   p_joint 1.834615e-03

Joint ci ratio: 8.919351e-02	ci left: 1.754273e-03	ci right 1.918970e-03	k: 1927	n:1050000
Cons ci ratio: 2.376540e-01	ci left: 2.282816e-04	ci right 2.907201e-04	k: 271	n:1050000
KS ci ratio: 3.653096e-03	ci left: 5.220879e-01	ci right 5.239996e-01	k: 549196	n:1050000
OR8K5   1050000 perm   576 sec   (1824 perm/sec)   p_kst 5.230438e-01   p_cons 2.580952e-04   p_joint 1.835238e-03

Joint ci ratio: 8.889454e-02	ci left: 1.749715e-03	ci right 1.913404e-03	k: 1940	n:1060000
Cons ci ratio: 2.372185e-01	ci left: 2.270153e-04	ci right 2.889769e-04	k: 272	n:1060000
KS ci ratio: 3.635730e-03	ci left: 5.221052e-01	ci right 5.240078e-01	k: 554440	n:1060000
OR8K5   1060000 perm   585 sec   (1812 perm/sec)   p_kst 5.230566e-01   p_cons 2.566038e-04   p_joint 1.830189e-03

Joint ci ratio: 8.844000e-02	ci left: 1.751639e-03	ci right 1.914628e-03	k: 1960	n:1070000
Cons ci ratio: 2.372188e-01	ci left: 2.248936e-04	ci right 2.862762e-04	k: 272	n:1070000
KS ci ratio: 3.618522e-03	ci left: 5.221344e-01	ci right 5.240281e-01	k: 559697	n:1070000
OR8K5   1070000 perm   594 sec   (1801 perm/sec)   p_kst 5.230813e-01   p_cons 2.542056e-04   p_joint 1.831776e-03

Joint ci ratio: 1.079513e-01	ci left: 1.153602e-03	ci right 1.286133e-03	k: 1316	n:1080000
Cons ci ratio: 2.642593e-01	ci left: 1.768111e-04	ci right 2.314839e-04	k: 219	n:1080000
KS ci ratio: 3.602230e-03	ci left: 5.220695e-01	ci right 5.239544e-01	k: 564853	n:1080000
OR8K5   1080000 perm   603 sec   (1790 perm/sec)   p_kst 5.230120e-01   p_cons 2.027778e-04   p_joint 1.218519e-03

Joint ci ratio: 1.075439e-01	ci left: 1.151946e-03	ci right 1.283755e-03	k: 1326	n:1090000
Cons ci ratio: 2.630663e-01	ci left: 1.769026e-04	ci right 2.313161e-04	k: 221	n:1090000
KS ci ratio: 3.585485e-03	ci left: 5.220994e-01	ci right 5.239757e-01	k: 570111	n:1090000
OR8K5   1090000 perm   613 sec   (1778 perm/sec)   p_kst 5.230376e-01   p_cons 2.027523e-04   p_joint 1.216514e-03

Joint ci ratio: 1.077072e-01	ci left: 1.137935e-03	ci right 1.268351e-03	k: 1322	n:1100000
Cons ci ratio: 2.624759e-01	ci left: 1.761436e-04	ci right 2.301820e-04	k: 222	n:1100000
KS ci ratio: 3.569341e-03	ci left: 5.220770e-01	ci right 5.239447e-01	k: 575312	n:1100000
OR8K5   1100000 perm   622 sec   (1767 perm/sec)   p_kst 5.230109e-01   p_cons 2.018182e-04   p_joint 1.201818e-03

Joint ci ratio: 1.071417e-01	ci left: 1.139957e-03	ci right 1.269875e-03	k: 1336	n:1110000
Cons ci ratio: 2.618895e-01	ci left: 1.753984e-04	ci right 2.290683e-04	k: 223	n:1110000
KS ci ratio: 3.552476e-03	ci left: 5.221865e-01	ci right 5.240458e-01	k: 580659	n:1110000
OR8K5   1110000 perm   632 sec   (1756 perm/sec)   p_kst 5.231162e-01   p_cons 2.009009e-04   p_joint 1.203604e-03

Joint ci ratio: 1.067830e-01	ci left: 1.137599e-03	ci right 1.266788e-03	k: 1345	n:1120000
Cons ci ratio: 2.607281e-01	ci left: 1.755011e-04	ci right 2.289255e-04	k: 225	n:1120000
KS ci ratio: 3.536633e-03	ci left: 5.221834e-01	ci right 5.240343e-01	k: 585882	n:1120000
OR8K5   1120000 perm   642 sec   (1745 perm/sec)   p_kst 5.231089e-01   p_cons 2.008929e-04   p_joint 1.200893e-03

Joint ci ratio: 1.074652e-01	ci left: 1.112890e-03	ci right 1.240131e-03	k: 1328	n:1130000
Cons ci ratio: 2.590145e-01	ci left: 1.764300e-04	ci right 2.297270e-04	k: 228	n:1130000
KS ci ratio: 3.521013e-03	ci left: 5.221786e-01	ci right 5.240213e-01	k: 591103	n:1130000
OR8K5   1130000 perm   652 sec   (1734 perm/sec)   p_kst 5.231000e-01   p_cons 2.017699e-04   p_joint 1.175221e-03

Joint ci ratio: 1.071434e-01	ci left: 1.109957e-03	ci right 1.236459e-03	k: 1336	n:1140000
Cons ci ratio: 2.584510e-01	ci left: 1.757026e-04	ci right 2.286458e-04	k: 229	n:1140000
KS ci ratio: 3.505351e-03	ci left: 5.222090e-01	ci right 5.240435e-01	k: 596364	n:1140000
OR8K5   1140000 perm   661 sec   (1724 perm/sec)   p_kst 5.231263e-01   p_cons 2.008772e-04   p_joint 1.171930e-03

Joint ci ratio: 1.064291e-01	ci left: 1.115540e-03	ci right 1.241777e-03	k: 1354	n:1150000
Cons ci ratio: 2.567816e-01	ci left: 1.766151e-04	ci right 2.294343e-04	k: 232	n:1150000
KS ci ratio: 3.490498e-03	ci left: 5.221527e-01	ci right 5.239793e-01	k: 601526	n:1150000
OR8K5   1150000 perm   671 sec   (1714 perm/sec)   p_kst 5.230661e-01   p_cons 2.017391e-04   p_joint 1.177391e-03

Joint ci ratio: 1.059221e-01	ci left: 1.116832e-03	ci right 1.242576e-03	k: 1367	n:1160000
Cons ci ratio: 2.562325e-01	ci left: 1.758992e-04	ci right 2.283739e-04	k: 233	n:1160000
KS ci ratio: 3.475533e-03	ci left: 5.221406e-01	ci right 5.239593e-01	k: 606738	n:1160000
OR8K5   1160000 perm   681 sec   (1704 perm/sec)   p_kst 5.230500e-01   p_cons 2.008621e-04   p_joint 1.178448e-03

Joint ci ratio: 1.054606e-01	ci left: 1.117272e-03	ci right 1.242483e-03	k: 1379	n:1170000
Cons ci ratio: 2.551444e-01	ci left: 1.759956e-04	ci right 2.282407e-04	k: 235	n:1170000
KS ci ratio: 3.461155e-03	ci left: 5.220714e-01	ci right 5.238823e-01	k: 611883	n:1170000
OR8K5   1170000 perm   691 sec   (1693 perm/sec)   p_kst 5.229769e-01   p_cons 2.008547e-04   p_joint 1.178632e-03

Joint ci ratio: 1.051943e-01	ci left: 1.113579e-03	ci right 1.238042e-03	k: 1386	n:1180000
Cons ci ratio: 2.551446e-01	ci left: 1.745041e-04	ci right 2.263064e-04	k: 235	n:1180000
KS ci ratio: 3.446901e-03	ci left: 5.220110e-01	ci right 5.238143e-01	k: 617037	n:1180000
OR8K5   1180000 perm   701 sec   (1683 perm/sec)   p_kst 5.229127e-01   p_cons 1.991525e-04   p_joint 1.174576e-03

Joint ci ratio: 1.050433e-01	ci left: 1.107494e-03	ci right 1.231089e-03	k: 1390	n:1190000
Cons ci ratio: 2.524837e-01	ci left: 1.769721e-04	ci right 2.288730e-04	k: 240	n:1190000
KS ci ratio: 3.432083e-03	ci left: 5.220593e-01	ci right 5.238549e-01	k: 622319	n:1190000
OR8K5   1190000 perm   711 sec   (1673 perm/sec)   p_kst 5.229571e-01   p_cons 2.016807e-04   p_joint 1.168067e-03

Joint ci ratio: 1.061575e-01	ci left: 1.074736e-03	ci right 1.196026e-03	k: 1361	n:1200000
Cons ci ratio: 2.519616e-01	ci left: 1.762780e-04	ci right 2.278517e-04	k: 241	n:1200000
KS ci ratio: 3.417499e-03	ci left: 5.221000e-01	ci right 5.238882e-01	k: 627593	n:1200000
OR8K5   1200000 perm   722 sec   (1663 perm/sec)   p_kst 5.229942e-01   p_cons 2.008333e-04   p_joint 1.134167e-03

Joint ci ratio: 1.056160e-01	ci left: 1.077118e-03	ci right 1.198018e-03	k: 1375	n:1210000
Cons ci ratio: 2.514428e-01	ci left: 1.755955e-04	ci right 2.268471e-04	k: 242	n:1210000
KS ci ratio: 3.403962e-03	ci left: 5.220137e-01	ci right 5.237944e-01	k: 632714	n:1210000
OR8K5   1210000 perm   732 sec   (1653 perm/sec)   p_kst 5.229041e-01   p_cons 2.000000e-04   p_joint 1.136364e-03

Joint ci ratio: 1.051584e-01	ci left: 1.077866e-03	ci right 1.198293e-03	k: 1387	n:1220000
Cons ci ratio: 2.504144e-01	ci left: 1.756924e-04	ci right 2.267299e-04	k: 244	n:1220000
KS ci ratio: 3.389632e-03	ci left: 5.220690e-01	ci right 5.238424e-01	k: 638006	n:1220000
OR8K5   1220000 perm   742 sec   (1644 perm/sec)   p_kst 5.229557e-01   p_cons 2.000000e-04   p_joint 1.136885e-03

Joint ci ratio: 1.072685e-01	ci left: 1.026365e-03	ci right 1.143485e-03	k: 1333	n:1230000
Cons ci ratio: 2.493985e-01	ci left: 1.757882e-04	ci right 2.266142e-04	k: 246	n:1230000
KS ci ratio: 3.376581e-03	ci left: 5.219607e-01	ci right 5.237270e-01	k: 643098	n:1230000
OR8K5   1230000 perm   755 sec   (1630 perm/sec)   p_kst 5.228439e-01   p_cons 2.000000e-04   p_joint 1.083740e-03

Joint ci ratio: 1.069884e-01	ci left: 1.023582e-03	ci right 1.140059e-03	k: 1340	n:1240000
Cons ci ratio: 2.488953e-01	ci left: 1.751267e-04	ci right 2.256434e-04	k: 247	n:1240000
KS ci ratio: 3.363072e-03	ci left: 5.219446e-01	ci right 5.237037e-01	k: 648302	n:1240000
OR8K5   1240000 perm   776 sec   (1597 perm/sec)   p_kst 5.228242e-01   p_cons 1.991935e-04   p_joint 1.080645e-03

Joint ci ratio: 1.065917e-01	ci left: 1.023179e-03	ci right 1.139152e-03	k: 1350	n:1250000
Cons ci ratio: 2.483951e-01	ci left: 1.744758e-04	ci right 2.246880e-04	k: 248	n:1250000
KS ci ratio: 3.349314e-03	ci left: 5.219895e-01	ci right 5.237416e-01	k: 653582	n:1250000
OR8K5   1250000 perm   798 sec   (1567 perm/sec)   p_kst 5.228656e-01   p_cons 1.984000e-04   p_joint 1.080000e-03

Joint ci ratio: 1.063168e-01	ci left: 1.020466e-03	ci right 1.135815e-03	k: 1357	n:1260000
Cons ci ratio: 2.483953e-01	ci left: 1.730911e-04	ci right 2.229048e-04	k: 248	n:1260000
KS ci ratio: 3.336175e-03	ci left: 5.219663e-01	ci right 5.237114e-01	k: 658777	n:1260000
OR8K5   1260000 perm   819 sec   (1538 perm/sec)   p_kst 5.228389e-01   p_cons 1.968254e-04   p_joint 1.076984e-03

Joint ci ratio: 1.057343e-01	ci left: 1.023929e-03	ci right 1.138996e-03	k: 1372	n:1270000
Cons ci ratio: 2.474037e-01	ci left: 1.732051e-04	ci right 2.228221e-04	k: 250	n:1270000
KS ci ratio: 3.322891e-03	ci left: 5.219884e-01	ci right 5.237265e-01	k: 664029	n:1270000
OR8K5   1270000 perm   840 sec   (1511 perm/sec)   p_kst 5.228575e-01   p_cons 1.968504e-04   p_joint 1.080315e-03

Joint ci ratio: 1.068706e-01	ci left: 9.938748e-04	ci right 1.106840e-03	k: 1343	n:1280000
Cons ci ratio: 2.454554e-01	ci left: 1.747840e-04	ci right 2.243988e-04	k: 254	n:1280000
KS ci ratio: 3.309858e-03	ci left: 5.219960e-01	ci right 5.237273e-01	k: 669263	n:1280000
OR8K5   1280000 perm   851 sec   (1503 perm/sec)   p_kst 5.228617e-01   p_cons 1.984375e-04   p_joint 1.049219e-03

Joint ci ratio: 1.065146e-01	ci left: 9.929609e-04	ci right 1.105423e-03	k: 1352	n:1290000
Cons ci ratio: 2.444984e-01	ci left: 1.748843e-04	ci right 2.243047e-04	k: 256	n:1290000
KS ci ratio: 3.297130e-03	ci left: 5.219803e-01	ci right 5.237049e-01	k: 674467	n:1290000
OR8K5   1290000 perm   862 sec   (1496 perm/sec)   p_kst 5.228426e-01   p_cons 1.984496e-04   p_joint 1.048062e-03

Joint ci ratio: 1.059288e-01	ci left: 9.965548e-04	ci right 1.108764e-03	k: 1367	n:1300000
Cons ci ratio: 2.440242e-01	ci left: 1.742612e-04	ci right 2.233955e-04	k: 257	n:1300000
KS ci ratio: 3.284502e-03	ci left: 5.219717e-01	ci right 5.236897e-01	k: 679680	n:1300000
OR8K5   1300000 perm   873 sec   (1489 perm/sec)   p_kst 5.228308e-01   p_cons 1.976923e-04   p_joint 1.051538e-03

Joint ci ratio: 1.062407e-01	ci left: 9.830023e-04	ci right 1.094032e-03	k: 1359	n:1310000
Cons ci ratio: 2.440244e-01	ci left: 1.729309e-04	ci right 2.216902e-04	k: 257	n:1310000
KS ci ratio: 3.272504e-03	ci left: 5.218893e-01	ci right 5.236007e-01	k: 684796	n:1310000
OR8K5   1310000 perm   884 sec   (1482 perm/sec)   p_kst 5.227450e-01   p_cons 1.961832e-04   p_joint 1.037405e-03

Joint ci ratio: 1.058910e-01	ci left: 9.821926e-04	ci right 1.092743e-03	k: 1368	n:1320000
Cons ci ratio: 2.430840e-01	ci left: 1.730436e-04	ci right 2.216182e-04	k: 259	n:1320000
KS ci ratio: 3.259944e-03	ci left: 5.219142e-01	ci right 5.236191e-01	k: 690052	n:1320000
OR8K5   1320000 perm   895 sec   (1474 perm/sec)   p_kst 5.227667e-01   p_cons 1.962121e-04   p_joint 1.036364e-03

Joint ci ratio: 1.056214e-01	ci left: 9.799316e-04	ci right 1.089929e-03	k: 1375	n:1330000
Cons ci ratio: 2.421545e-01	ci left: 1.731548e-04	ci right 2.215469e-04	k: 261	n:1330000
KS ci ratio: 3.247942e-03	ci left: 5.218748e-01	ci right 5.235733e-01	k: 695223	n:1330000
OR8K5   1330000 perm   914 sec   (1455 perm/sec)   p_kst 5.227241e-01   p_cons 1.962406e-04   p_joint 1.033835e-03

Joint ci ratio: 1.065956e-01	ci left: 9.544564e-04	ci right 1.062644e-03	k: 1350	n:1340000
Cons ci ratio: 2.407798e-01	ci left: 1.739660e-04	ci right 2.222675e-04	k: 264	n:1340000
KS ci ratio: 3.235913e-03	ci left: 5.218606e-01	ci right 5.235527e-01	k: 700427	n:1340000
OR8K5   1340000 perm   937 sec   (1430 perm/sec)   p_kst 5.227067e-01   p_cons 1.970149e-04   p_joint 1.007463e-03

Joint ci ratio: 1.069532e-01	ci left: 9.408974e-04	ci right 1.047929e-03	k: 1341	n:1350000
Cons ci ratio: 2.389827e-01	ci left: 1.754623e-04	ci right 2.237618e-04	k: 268	n:1350000
KS ci ratio: 3.223944e-03	ci left: 5.218578e-01	ci right 5.235436e-01	k: 705646	n:1350000
OR8K5   1350000 perm   961 sec   (1404 perm/sec)   p_kst 5.227007e-01   p_cons 1.985185e-04   p_joint 9.933333e-04

Joint ci ratio: 1.062427e-01	ci left: 9.468616e-04	ci right 1.053811e-03	k: 1359	n:1360000
Cons ci ratio: 2.363609e-01	ci left: 1.783212e-04	ci right 2.267904e-04	k: 274	n:1360000
KS ci ratio: 3.211800e-03	ci left: 5.219028e-01	ci right 5.235824e-01	k: 710930	n:1360000
OR8K5   1360000 perm   975 sec   (1394 perm/sec)   p_kst 5.227426e-01   p_cons 2.014706e-04   p_joint 9.992647e-04

Joint ci ratio: 1.058543e-01	ci left: 9.470558e-04	ci right 1.053612e-03	k: 1369	n:1370000
Cons ci ratio: 2.355061e-01	ci left: 1.783931e-04	ci right 2.266810e-04	k: 276	n:1370000
KS ci ratio: 3.199829e-03	ci left: 5.219413e-01	ci right 5.236148e-01	k: 716206	n:1370000
OR8K5   1370000 perm   987 sec   (1387 perm/sec)   p_kst 5.227781e-01   p_cons 2.014599e-04   p_joint 9.992701e-04

Joint ci ratio: 1.053936e-01	ci left: 9.486591e-04	ci right 1.054902e-03	k: 1381	n:1380000
Cons ci ratio: 2.350822e-01	ci left: 1.777824e-04	ci right 2.258057e-04	k: 277	n:1380000
KS ci ratio: 3.188357e-03	ci left: 5.219220e-01	ci right 5.235895e-01	k: 721403	n:1380000
OR8K5   1380000 perm   999 sec   (1381 perm/sec)   p_kst 5.227558e-01   p_cons 2.007246e-04   p_joint 1.000725e-03

Joint ci ratio: 1.050144e-01	ci left: 9.488392e-04	ci right 1.054697e-03	k: 1391	n:1390000
Cons ci ratio: 2.346606e-01	ci left: 1.771804e-04	ci right 2.249429e-04	k: 278	n:1390000
KS ci ratio: 3.176971e-03	ci left: 5.219088e-01	ci right 5.235702e-01	k: 726608	n:1390000
OR8K5   1390000 perm   1012 sec   (1374 perm/sec)   p_kst 5.227396e-01   p_cons 2.000000e-04   p_joint 1.000719e-03

Joint ci ratio: 1.049393e-01	ci left: 9.434527e-04	ci right 1.048629e-03	k: 1393	n:1400000
Cons ci ratio: 2.342413e-01	ci left: 1.765872e-04	ci right 2.240923e-04	k: 279	n:1400000
KS ci ratio: 3.165497e-03	ci left: 5.219286e-01	ci right 5.235841e-01	k: 731859	n:1400000
OR8K5   1400000 perm   1023 sec   (1368 perm/sec)   p_kst 5.227564e-01   p_cons 1.992857e-04   p_joint 9.950000e-04

Joint ci ratio: 1.046022e-01	ci left: 9.429772e-04	ci right 1.047742e-03	k: 1402	n:1410000
Cons ci ratio: 2.338242e-01	ci left: 1.760024e-04	ci right 2.232537e-04	k: 280	n:1410000
KS ci ratio: 3.154295e-03	ci left: 5.219248e-01	ci right 5.235744e-01	k: 737077	n:1410000
OR8K5   1410000 perm   1035 sec   (1362 perm/sec)   p_kst 5.227496e-01   p_cons 1.985816e-04   p_joint 9.943262e-04

Joint ci ratio: 1.041945e-01	ci left: 9.438808e-04	ci right 1.048313e-03	k: 1413	n:1420000
Cons ci ratio: 2.329965e-01	ci left: 1.760891e-04	ci right 2.231722e-04	k: 282	n:1420000
KS ci ratio: 3.143034e-03	ci left: 5.219492e-01	ci right 5.235930e-01	k: 742335	n:1420000
OR8K5   1420000 perm   1047 sec   (1357 perm/sec)   p_kst 5.227711e-01   p_cons 1.985915e-04   p_joint 9.950704e-04

Joint ci ratio: 1.047900e-01	ci left: 9.263834e-04	ci right 1.029501e-03	k: 1397	n:1430000
Cons ci ratio: 2.325860e-01	ci left: 1.755162e-04	ci right 2.223516e-04	k: 283	n:1430000
KS ci ratio: 3.131927e-03	ci left: 5.219677e-01	ci right 5.236057e-01	k: 747585	n:1430000
OR8K5   1430000 perm   1061 sec   (1347 perm/sec)   p_kst 5.227867e-01   p_cons 1.979021e-04   p_joint 9.769231e-04

Joint ci ratio: 1.045288e-01	ci left: 9.246840e-04	ci right 1.027340e-03	k: 1404	n:1440000
Cons ci ratio: 2.321777e-01	ci left: 1.749513e-04	ci right 2.215423e-04	k: 284	n:1440000
KS ci ratio: 3.121202e-03	ci left: 5.219435e-01	ci right 5.235758e-01	k: 752774	n:1440000
OR8K5   1440000 perm   1085 sec   (1327 perm/sec)   p_kst 5.227597e-01   p_cons 1.972222e-04   p_joint 9.750000e-04

Joint ci ratio: 1.041587e-01	ci left: 9.250234e-04	ci right 1.027331e-03	k: 1414	n:1450000
Cons ci ratio: 2.309652e-01	ci left: 1.756937e-04	ci right 2.222032e-04	k: 287	n:1450000
KS ci ratio: 3.110647e-03	ci left: 5.219101e-01	ci right 5.235367e-01	k: 757949	n:1450000
OR8K5   1450000 perm   1110 sec   (1307 perm/sec)   p_kst 5.227234e-01   p_cons 1.979310e-04   p_joint 9.751724e-04

Joint ci ratio: 1.036471e-01	ci left: 9.280276e-04	ci right 1.030133e-03	k: 1428	n:1460000
Cons ci ratio: 2.305653e-01	ci left: 1.751357e-04	ci right 2.214057e-04	k: 288	n:1460000
KS ci ratio: 3.099777e-03	ci left: 5.219449e-01	ci right 5.235660e-01	k: 763223	n:1460000
OR8K5   1460000 perm   1135 sec   (1286 perm/sec)   p_kst 5.227555e-01   p_cons 1.972603e-04   p_joint 9.780822e-04

Joint ci ratio: 1.050172e-01	ci left: 8.972004e-04	ci right 9.972996e-04	k: 1391	n:1470000
Cons ci ratio: 2.293778e-01	ci left: 1.758675e-04	ci right 2.220577e-04	k: 291	n:1470000
KS ci ratio: 3.089293e-03	ci left: 5.219350e-01	ci right 5.235506e-01	k: 768432	n:1470000
OR8K5   1470000 perm   1152 sec   (1276 perm/sec)   p_kst 5.227429e-01   p_cons 1.979592e-04   p_joint 9.462585e-04

Joint ci ratio: 1.049421e-01	ci left: 8.924540e-04	ci right 9.919480e-04	k: 1393	n:1480000
Cons ci ratio: 2.285963e-01	ci left: 1.759531e-04	ci right 2.219860e-04	k: 293	n:1480000
KS ci ratio: 3.078816e-03	ci left: 5.219415e-01	ci right 5.235516e-01	k: 773665	n:1480000
OR8K5   1480000 perm   1189 sec   (1245 perm/sec)   p_kst 5.227466e-01   p_cons 1.979730e-04   p_joint 9.412162e-04

Joint ci ratio: 1.044933e-01	ci left: 8.943072e-04	ci right 9.935551e-04	k: 1405	n:1490000
Cons ci ratio: 2.278227e-01	ci left: 1.760377e-04	ci right 2.219151e-04	k: 295	n:1490000
KS ci ratio: 3.068258e-03	ci left: 5.219782e-01	ci right 5.235828e-01	k: 778943	n:1490000
OR8K5   1490000 perm   1212 sec   (1230 perm/sec)   p_kst 5.227805e-01   p_cons 1.979866e-04   p_joint 9.429530e-04

Joint ci ratio: 1.040501e-01	ci left: 8.961365e-04	ci right 9.951399e-04	k: 1417	n:1500000
Cons ci ratio: 2.255479e-01	ci left: 1.786371e-04	ci right 2.246624e-04	k: 301	n:1500000
KS ci ratio: 3.058176e-03	ci left: 5.219543e-01	ci right 5.235536e-01	k: 784131	n:1500000
OR8K5   1500000 perm   1224 sec   (1226 perm/sec)   p_kst 5.227540e-01   p_cons 2.006667e-04   p_joint 9.446667e-04

Joint ci ratio: 1.040137e-01	ci left: 8.908468e-04	ci right 9.892292e-04	k: 1418	n:1510000
Cons ci ratio: 2.255480e-01	ci left: 1.774540e-04	ci right 2.231745e-04	k: 301	n:1510000
KS ci ratio: 3.048165e-03	ci left: 5.219354e-01	ci right 5.235294e-01	k: 789326	n:1510000
OR8K5   1510000 perm   1236 sec   (1222 perm/sec)   p_kst 5.227325e-01   p_cons 1.993377e-04   p_joint 9.390728e-04

Joint ci ratio: 1.036854e-01	ci left: 8.907532e-04	ci right 9.887959e-04	k: 1427	n:1520000
Cons ci ratio: 2.240689e-01	ci left: 1.787700e-04	ci right 2.244858e-04	k: 305	n:1520000
KS ci ratio: 3.037998e-03	ci left: 5.219582e-01	ci right 5.235470e-01	k: 794584	n:1520000
OR8K5   1520000 perm   1248 sec   (1218 perm/sec)   p_kst 5.227526e-01   p_cons 2.006579e-04   p_joint 9.388158e-04

Joint ci ratio: 1.033602e-01	ci left: 8.906613e-04	ci right 9.883678e-04	k: 1436	n:1530000
Cons ci ratio: 2.222601e-01	ci left: 1.806869e-04	ci right 2.264689e-04	k: 310	n:1530000
KS ci ratio: 3.028266e-03	ci left: 5.219258e-01	ci right 5.235094e-01	k: 799758	n:1530000
OR8K5   1530000 perm   1260 sec   (1214 perm/sec)   p_kst 5.227176e-01   p_cons 2.026144e-04   p_joint 9.385621e-04

Joint ci ratio: 1.034326e-01	ci left: 8.836125e-04	ci right 9.806178e-04	k: 1434	n:1540000
Cons ci ratio: 2.219037e-01	ci left: 1.801268e-04	ci right 2.256837e-04	k: 311	n:1540000
KS ci ratio: 3.018376e-03	ci left: 5.219354e-01	ci right 5.235138e-01	k: 804996	n:1540000
OR8K5   1540000 perm   1273 sec   (1210 perm/sec)   p_kst 5.227247e-01   p_cons 2.019481e-04   p_joint 9.311688e-04

Joint ci ratio: 1.037956e-01	ci left: 8.716271e-04	ci right 9.676728e-04	k: 1424	n:1550000
Cons ci ratio: 2.211959e-01	ci left: 1.801834e-04	ci right 2.255895e-04	k: 313	n:1550000
KS ci ratio: 3.008301e-03	ci left: 5.219914e-01	ci right 5.235647e-01	k: 810306	n:1550000
OR8K5   1550000 perm   1285 sec   (1206 perm/sec)   p_kst 5.227781e-01   p_cons 2.019355e-04   p_joint 9.187097e-04

Joint ci ratio: 1.034693e-01	ci left: 8.716594e-04	ci right 9.673885e-04	k: 1433	n:1560000
Cons ci ratio: 2.208446e-01	ci left: 1.796339e-04	ci right 2.248199e-04	k: 314	n:1560000
KS ci ratio: 2.998516e-03	ci left: 5.220152e-01	ci right 5.235834e-01	k: 815567	n:1560000
OR8K5   1560000 perm   1313 sec   (1188 perm/sec)   p_kst 5.227994e-01   p_cons 2.012821e-04   p_joint 9.185897e-04

Joint ci ratio: 1.043103e-01	ci left: 8.518380e-04	ci right 9.461971e-04	k: 1410	n:1570000
Cons ci ratio: 2.208448e-01	ci left: 1.784898e-04	ci right 2.233879e-04	k: 314	n:1570000
KS ci ratio: 2.988783e-03	ci left: 5.220457e-01	ci right 5.236090e-01	k: 820839	n:1570000
OR8K5   1570000 perm   1339 sec   (1172 perm/sec)   p_kst 5.228274e-01   p_cons 2.000000e-04   p_joint 8.980892e-04

Joint ci ratio: 1.038694e-01	ci left: 8.538439e-04	ci right 9.480010e-04	k: 1422	n:1580000
Cons ci ratio: 2.198005e-01	ci left: 1.791540e-04	ci right 2.239774e-04	k: 317	n:1580000
KS ci ratio: 2.979572e-03	ci left: 5.220044e-01	ci right 5.235626e-01	k: 825998	n:1580000
OR8K5   1580000 perm   1358 sec   (1164 perm/sec)   p_kst 5.227835e-01   p_cons 2.006329e-04   p_joint 9.000000e-04

Joint ci ratio: 1.034702e-01	ci left: 8.552127e-04	ci right 9.491363e-04	k: 1433	n:1590000
Cons ci ratio: 2.177555e-01	ci left: 1.815941e-04	ci right 2.265488e-04	k: 323	n:1590000
KS ci ratio: 2.969947e-03	ci left: 5.220472e-01	ci right 5.236005e-01	k: 831290	n:1590000
OR8K5   1590000 perm   1381 sec   (1152 perm/sec)   p_kst 5.228239e-01   p_cons 2.031447e-04   p_joint 9.012579e-04

Joint ci ratio: 1.035067e-01	ci left: 8.492586e-04	ci right 9.425632e-04	k: 1432	n:1600000
Cons ci ratio: 2.170865e-01	ci left: 1.816411e-04	ci right 2.264508e-04	k: 325	n:1600000
KS ci ratio: 2.960482e-03	ci left: 5.220782e-01	ci right 5.236267e-01	k: 836564	n:1600000
OR8K5   1600000 perm   1407 sec   (1137 perm/sec)   p_kst 5.228525e-01   p_cons 2.031250e-04   p_joint 8.950000e-04

Joint ci ratio: 1.033627e-01	ci left: 8.464039e-04	ci right 9.392575e-04	k: 1436	n:1610000
Cons ci ratio: 2.167544e-01	ci left: 1.811003e-04	ci right 2.256991e-04	k: 326	n:1610000
KS ci ratio: 2.951147e-03	ci left: 5.221020e-01	ci right 5.236457e-01	k: 841827	n:1610000
OR8K5   1610000 perm   1424 sec   (1131 perm/sec)   p_kst 5.228739e-01   p_cons 2.024845e-04   p_joint 8.919255e-04

Joint ci ratio: 1.040537e-01	ci left: 8.297546e-04	ci right 9.214276e-04	k: 1417	n:1620000
Cons ci ratio: 2.160946e-01	ci left: 1.811500e-04	ci right 2.256073e-04	k: 328	n:1620000
KS ci ratio: 2.941903e-03	ci left: 5.221250e-01	ci right 5.236639e-01	k: 847089	n:1620000
OR8K5   1620000 perm   1437 sec   (1127 perm/sec)   p_kst 5.228944e-01   p_cons 2.024691e-04   p_joint 8.746914e-04

Joint ci ratio: 1.066052e-01	ci left: 7.846415e-04	ci right 8.735892e-04	k: 1350	n:1630000
Cons ci ratio: 2.154407e-01	ci left: 1.811994e-04	ci right 2.255164e-04	k: 330	n:1630000
KS ci ratio: 2.932678e-03	ci left: 5.221593e-01	ci right 5.236934e-01	k: 852370	n:1630000
OR8K5   1630000 perm   1451 sec   (1123 perm/sec)   p_kst 5.229264e-01   p_cons 2.024540e-04   p_joint 8.282209e-04

Joint ci ratio: 1.062909e-01	ci left: 7.846052e-04	ci right 8.732703e-04	k: 1358	n:1640000
Cons ci ratio: 2.144709e-01	ci left: 1.818253e-04	ci right 2.260689e-04	k: 333	n:1640000
KS ci ratio: 2.923742e-03	ci left: 5.221584e-01	ci right 5.236879e-01	k: 857594	n:1640000
OR8K5   1640000 perm   1465 sec   (1120 perm/sec)   p_kst 5.229232e-01   p_cons 2.030488e-04   p_joint 8.280488e-04

Joint ci ratio: 1.061350e-01	ci left: 7.822099e-04	ci right 8.704665e-04	k: 1362	n:1650000
Cons ci ratio: 2.144711e-01	ci left: 1.807233e-04	ci right 2.246988e-04	k: 333	n:1650000
KS ci ratio: 2.915032e-03	ci left: 5.221327e-01	ci right 5.236575e-01	k: 862777	n:1650000
OR8K5   1650000 perm   1478 sec   (1117 perm/sec)   p_kst 5.228952e-01   p_cons 2.018182e-04   p_joint 8.254545e-04

Joint ci ratio: 1.059022e-01	ci left: 7.810163e-04	ci right 8.689330e-04	k: 1368	n:1660000
Cons ci ratio: 2.138318e-01	ci left: 1.807748e-04	ci right 2.246145e-04	k: 335	n:1660000
KS ci ratio: 2.906330e-03	ci left: 5.221194e-01	ci right 5.236396e-01	k: 867980	n:1660000
OR8K5   1660000 perm   1491 sec   (1113 perm/sec)   p_kst 5.228795e-01   p_cons 2.018072e-04   p_joint 8.240964e-04

Joint ci ratio: 1.056710e-01	ci left: 7.798373e-04	ci right 8.674177e-04	k: 1374	n:1670000
Cons ci ratio: 2.131982e-01	ci left: 1.808259e-04	ci right 2.245310e-04	k: 337	n:1670000
KS ci ratio: 2.897513e-03	ci left: 5.221391e-01	ci right 5.236548e-01	k: 873238	n:1670000
OR8K5   1670000 perm   1505 sec   (1110 perm/sec)   p_kst 5.228970e-01   p_cons 2.017964e-04   p_joint 8.227545e-04

Joint ci ratio: 1.053268e-01	ci left: 7.804112e-04	ci right 8.677529e-04	k: 1383	n:1680000
Cons ci ratio: 2.128836e-01	ci left: 1.803130e-04	ci right 2.238215e-04	k: 338	n:1680000
KS ci ratio: 2.888725e-03	ci left: 5.221676e-01	ci right 5.236787e-01	k: 878511	n:1680000
OR8K5   1680000 perm   1518 sec   (1107 perm/sec)   p_kst 5.229232e-01   p_cons 2.011905e-04   p_joint 8.232143e-04

Joint ci ratio: 1.050615e-01	ci left: 7.798264e-04	ci right 8.668692e-04	k: 1390	n:1690000
Cons ci ratio: 2.125704e-01	ci left: 1.798063e-04	ci right 2.231203e-04	k: 339	n:1690000
KS ci ratio: 2.880027e-03	ci left: 5.221940e-01	ci right 5.237006e-01	k: 883781	n:1690000
OR8K5   1690000 perm   1532 sec   (1103 perm/sec)   p_kst 5.229473e-01   p_cons 2.005917e-04   p_joint 8.224852e-04

Joint ci ratio: 1.047982e-01	ci left: 7.792488e-04	ci right 8.659957e-04	k: 1397	n:1700000
Cons ci ratio: 2.119479e-01	ci left: 1.798625e-04	ci right 2.230468e-04	k: 341	n:1700000
KS ci ratio: 2.871643e-03	ci left: 5.221788e-01	ci right 5.236811e-01	k: 888981	n:1700000
OR8K5   1700000 perm   1557 sec   (1092 perm/sec)   p_kst 5.229300e-01   p_cons 2.005882e-04   p_joint 8.217647e-04

Joint ci ratio: 1.044996e-01	ci left: 7.792477e-04	ci right 8.657321e-04	k: 1405	n:1710000
Cons ci ratio: 2.110244e-01	ci left: 1.804722e-04	ci right 2.235896e-04	k: 344	n:1710000
KS ci ratio: 2.863256e-03	ci left: 5.221774e-01	ci right 5.236752e-01	k: 894204	n:1710000
OR8K5   1710000 perm   1585 sec   (1079 perm/sec)   p_kst 5.229263e-01   p_cons 2.011696e-04   p_joint 8.216374e-04

Joint ci ratio: 1.043514e-01	ci left: 7.769820e-04	ci right 8.630852e-04	k: 1409	n:1720000
Cons ci ratio: 2.110245e-01	ci left: 1.794229e-04	ci right 2.222896e-04	k: 344	n:1720000
KS ci ratio: 2.854778e-03	ci left: 5.222044e-01	ci right 5.236979e-01	k: 899476	n:1720000
OR8K5   1720000 perm   1612 sec   (1067 perm/sec)   p_kst 5.229512e-01   p_cons 2.000000e-04   p_joint 8.191860e-04

Joint ci ratio: 1.040934e-01	ci left: 7.764315e-04	ci right 8.622479e-04	k: 1416	n:1730000
Cons ci ratio: 2.110246e-01	ci left: 1.783858e-04	ci right 2.210047e-04	k: 344	n:1730000
KS ci ratio: 2.846316e-03	ci left: 5.222415e-01	ci right 5.237307e-01	k: 904766	n:1730000
OR8K5   1730000 perm   1641 sec   (1054 perm/sec)   p_kst 5.229861e-01   p_cons 1.988439e-04   p_joint 8.184971e-04

Joint ci ratio: 1.037643e-01	ci left: 7.770073e-04	ci right 8.625993e-04	k: 1425	n:1740000
Cons ci ratio: 2.110247e-01	ci left: 1.773605e-04	ci right 2.197346e-04	k: 344	n:1740000
KS ci ratio: 2.837981e-03	ci left: 5.222690e-01	ci right 5.237539e-01	k: 910040	n:1740000
OR8K5   1740000 perm   1669 sec   (1042 perm/sec)   p_kst 5.230115e-01   p_cons 1.977011e-04   p_joint 8.189655e-04

Joint ci ratio: 1.035830e-01	ci left: 7.753502e-04	ci right 8.606014e-04	k: 1430	n:1750000
Cons ci ratio: 2.110248e-01	ci left: 1.763470e-04	ci right 2.184790e-04	k: 344	n:1750000
KS ci ratio: 2.829997e-03	ci left: 5.222471e-01	ci right 5.237277e-01	k: 915228	n:1750000
OR8K5   1750000 perm   1687 sec   (1037 perm/sec)   p_kst 5.229874e-01   p_cons 1.965714e-04   p_joint 8.171429e-04

Joint ci ratio: 1.033306e-01	ci left: 7.748192e-04	ci right 8.597918e-04	k: 1437	n:1760000
Cons ci ratio: 2.104158e-01	ci left: 1.764215e-04	ci right 2.184339e-04	k: 346	n:1760000
KS ci ratio: 2.822026e-03	ci left: 5.222351e-01	ci right 5.237115e-01	k: 920433	n:1760000
OR8K5   1760000 perm   1702 sec   (1034 perm/sec)   p_kst 5.229733e-01   p_cons 1.965909e-04   p_joint 8.164773e-04

Joint ci ratio: 1.030444e-01	ci left: 7.748448e-04	ci right 8.595706e-04	k: 1445	n:1770000
Cons ci ratio: 2.098120e-01	ci left: 1.764952e-04	ci right 2.183891e-04	k: 348	n:1770000
KS ci ratio: 2.813882e-03	ci left: 5.222656e-01	ci right 5.237378e-01	k: 925713	n:1770000
OR8K5   1770000 perm   1716 sec   (1032 perm/sec)   p_kst 5.230017e-01   p_cons 1.966102e-04   p_joint 8.163842e-04

Joint ci ratio: 1.029378e-01	ci left: 7.721337e-04	ci right 8.564704e-04	k: 1448	n:1780000
Cons ci ratio: 2.095122e-01	ci left: 1.760360e-04	ci right 2.177534e-04	k: 349	n:1780000
KS ci ratio: 2.806264e-03	ci left: 5.222148e-01	ci right 5.236829e-01	k: 930849	n:1780000
OR8K5   1780000 perm   1730 sec   (1029 perm/sec)   p_kst 5.229489e-01   p_cons 1.960674e-04   p_joint 8.134831e-04

Joint ci ratio: 1.026548e-01	ci left: 7.721745e-04	ci right 8.562698e-04	k: 1456	n:1790000
Cons ci ratio: 2.086199e-01	ci left: 1.766408e-04	ci right 2.183005e-04	k: 352	n:1790000
KS ci ratio: 2.798435e-03	ci left: 5.222132e-01	ci right 5.236772e-01	k: 936072	n:1790000
OR8K5   1790000 perm   1745 sec   (1026 perm/sec)   p_kst 5.229453e-01   p_cons 1.966480e-04   p_joint 8.134078e-04

Joint ci ratio: 1.041318e-01	ci left: 7.456953e-04	ci right 8.281468e-04	k: 1415	n:1800000
Cons ci ratio: 2.071578e-01	ci left: 1.782926e-04	ci right 2.200099e-04	k: 357	n:1800000
KS ci ratio: 2.790708e-03	ci left: 5.222050e-01	ci right 5.236649e-01	k: 941283	n:1800000
OR8K5   1800000 perm   1759 sec   (1023 perm/sec)   p_kst 5.229350e-01   p_cons 1.983333e-04   p_joint 7.861111e-04

Joint ci ratio: 1.043906e-01	ci left: 7.378087e-04	ci right 8.196033e-04	k: 1408	n:1810000
Cons ci ratio: 2.068691e-01	ci left: 1.778314e-04	ci right 2.193755e-04	k: 358	n:1810000
KS ci ratio: 2.783168e-03	ci left: 5.221748e-01	ci right 5.236307e-01	k: 946454	n:1810000
OR8K5   1810000 perm   1774 sec   (1020 perm/sec)   p_kst 5.229028e-01   p_cons 1.977901e-04   p_joint 7.779006e-04

Joint ci ratio: 1.039488e-01	ci left: 7.401765e-04	ci right 8.218651e-04	k: 1420	n:1820000
Cons ci ratio: 2.057261e-01	ci left: 1.789386e-04	ci right 2.204813e-04	k: 362	n:1820000
KS ci ratio: 2.775441e-03	ci left: 5.221894e-01	ci right 5.236413e-01	k: 951706	n:1820000
OR8K5   1820000 perm   1789 sec   (1018 perm/sec)   p_kst 5.229154e-01   p_cons 1.989011e-04   p_joint 7.802198e-04

Joint ci ratio: 1.035487e-01	ci left: 7.419868e-04	ci right 8.235408e-04	k: 1431	n:1830000
Cons ci ratio: 2.051617e-01	ci left: 1.789975e-04	ci right 2.204255e-04	k: 364	n:1830000
KS ci ratio: 2.767706e-03	ci left: 5.222170e-01	ci right 5.236649e-01	k: 956982	n:1830000
OR8K5   1830000 perm   1803 sec   (1015 perm/sec)   p_kst 5.229410e-01   p_cons 1.989071e-04   p_joint 7.819672e-04

Joint ci ratio: 1.032606e-01	ci left: 7.421896e-04	ci right 8.235253e-04	k: 1439	n:1840000
Cons ci ratio: 2.046019e-01	ci left: 1.790559e-04	ci right 2.203702e-04	k: 366	n:1840000
KS ci ratio: 2.760182e-03	ci left: 5.222177e-01	ci right 5.236616e-01	k: 962209	n:1840000
OR8K5   1840000 perm   1818 sec   (1012 perm/sec)   p_kst 5.229397e-01   p_cons 1.989130e-04   p_joint 7.820652e-04

Joint ci ratio: 1.031891e-01	ci left: 7.392309e-04	ci right 8.201829e-04	k: 1441	n:1850000
Cons ci ratio: 2.043237e-01	ci left: 1.786009e-04	ci right 2.197472e-04	k: 367	n:1850000
KS ci ratio: 2.752349e-03	ci left: 5.222854e-01	ci right 5.237254e-01	k: 967560	n:1850000
OR8K5   1850000 perm   1833 sec   (1009 perm/sec)   p_kst 5.230054e-01   p_cons 1.983784e-04   p_joint 7.789189e-04

Joint ci ratio: 1.028686e-01	ci left: 7.399706e-04	ci right 8.207366e-04	k: 1450	n:1860000
Cons ci ratio: 2.029495e-01	ci left: 1.801918e-04	ci right 2.213908e-04	k: 372	n:1860000
KS ci ratio: 2.745041e-03	ci left: 5.222690e-01	ci right 5.237051e-01	k: 972756	n:1860000
OR8K5   1860000 perm   1850 sec   (1005 perm/sec)   p_kst 5.229871e-01   p_cons 2.000000e-04   p_joint 7.795699e-04

Joint ci ratio: 1.024808e-01	ci left: 7.417449e-04	ci right 8.223810e-04	k: 1461	n:1870000
Cons ci ratio: 2.024076e-01	ci left: 1.802434e-04	ci right 2.213306e-04	k: 374	n:1870000
KS ci ratio: 2.737539e-03	ci left: 5.222988e-01	ci right 5.237311e-01	k: 978038	n:1870000
OR8K5   1870000 perm   1865 sec   (1002 perm/sec)   p_kst 5.230150e-01   p_cons 2.000000e-04   p_joint 7.812834e-04

Joint ci ratio: 9.281671e-02	ci left: 9.038689e-04	ci right 9.923609e-04	k: 1781	n:1880000
Cons ci ratio: 2.021383e-01	ci left: 1.797897e-04	ci right 2.207121e-04	k: 375	n:1880000
KS ci ratio: 2.730036e-03	ci left: 5.223395e-01	ci right 5.237679e-01	k: 983341	n:1880000
OR8K5   1880000 perm   1881 sec   (1000 perm/sec)   p_kst 5.230537e-01   p_cons 1.994681e-04   p_joint 9.473404e-04

Joint ci ratio: 9.253152e-02	ci left: 9.047717e-04	ci right 9.930652e-04	k: 1792	n:1890000
Cons ci ratio: 2.013366e-01	ci left: 1.803455e-04	ci right 2.212117e-04	k: 378	n:1890000
KS ci ratio: 2.722687e-03	ci left: 5.223628e-01	ci right 5.237874e-01	k: 988612	n:1890000
OR8K5   1890000 perm   1896 sec   (997 perm/sec)   p_kst 5.230751e-01   p_cons 2.000000e-04   p_joint 9.481481e-04

Joint ci ratio: 9.235149e-02	ci left: 9.036088e-04	ci right 9.916079e-04	k: 1799	n:1900000
Cons ci ratio: 2.010716e-01	ci left: 1.798961e-04	ci right 2.206002e-04	k: 379	n:1900000
KS ci ratio: 2.715318e-03	ci left: 5.224006e-01	ci right 5.238215e-01	k: 993911	n:1900000
OR8K5   1900000 perm   1911 sec   (994 perm/sec)   p_kst 5.231111e-01   p_cons 1.994737e-04   p_joint 9.468421e-04

Joint ci ratio: 9.214698e-02	ci left: 9.029697e-04	ci right 9.907014e-04	k: 1807	n:1910000
Cons ci ratio: 2.010717e-01	ci left: 1.789542e-04	ci right 2.194453e-04	k: 379	n:1910000
KS ci ratio: 2.708158e-03	ci left: 5.224102e-01	ci right 5.238274e-01	k: 999157	n:1910000
OR8K5   1910000 perm   1927 sec   (991 perm/sec)   p_kst 5.231188e-01   p_cons 1.984293e-04   p_joint 9.460733e-04

Joint ci ratio: 9.237763e-02	ci left: 8.936872e-04	ci right 9.807461e-04	k: 1798	n:1920000
Cons ci ratio: 2.005446e-01	ci left: 1.790115e-04	ci right 2.193963e-04	k: 381	n:1920000
KS ci ratio: 2.701105e-03	ci left: 5.224104e-01	ci right 5.238239e-01	k: 1004385	n:1920000
OR8K5   1920000 perm   1942 sec   (989 perm/sec)   p_kst 5.231172e-01   p_cons 1.984375e-04   p_joint 9.364583e-04

Joint ci ratio: 9.212193e-02	ci left: 8.941185e-04	ci right 9.809653e-04	k: 1808	n:1930000
Cons ci ratio: 2.005447e-01	ci left: 1.780840e-04	ci right 2.182596e-04	k: 381	n:1930000
KS ci ratio: 2.693903e-03	ci left: 5.224484e-01	ci right 5.238582e-01	k: 1009686	n:1930000
OR8K5   1930000 perm   1971 sec   (979 perm/sec)   p_kst 5.231534e-01   p_cons 1.974093e-04   p_joint 9.367876e-04

Joint ci ratio: 9.217317e-02	ci left: 8.885024e-04	ci right 9.748543e-04	k: 1806	n:1940000
Cons ci ratio: 2.002828e-01	ci left: 1.776556e-04	ci right 2.176758e-04	k: 382	n:1940000
KS ci ratio: 2.686905e-03	ci left: 5.224587e-01	ci right 5.238649e-01	k: 1014934	n:1940000
OR8K5   1940000 perm   1994 sec   (973 perm/sec)   p_kst 5.231619e-01   p_cons 1.969072e-04   p_joint 9.309278e-04

Joint ci ratio: 9.237830e-02	ci left: 8.799379e-04	ci right 9.656580e-04	k: 1798	n:1950000
Cons ci ratio: 1.997619e-01	ci left: 1.777188e-04	ci right 2.176365e-04	k: 384	n:1950000
KS ci ratio: 2.680017e-03	ci left: 5.224587e-01	ci right 5.238612e-01	k: 1020162	n:1950000
OR8K5   1950000 perm   2012 sec   (969 perm/sec)   p_kst 5.231600e-01   p_cons 1.969231e-04   p_joint 9.220513e-04

Joint ci ratio: 9.300152e-02	ci left: 8.634870e-04	ci right 9.482029e-04	k: 1774	n:1960000
Cons ci ratio: 1.984771e-01	ci left: 1.792359e-04	ci right 2.192041e-04	k: 389	n:1960000
KS ci ratio: 2.673239e-03	ci left: 5.224479e-01	ci right 5.238469e-01	k: 1025369	n:1960000
OR8K5   1960000 perm   2027 sec   (967 perm/sec)   p_kst 5.231474e-01   p_cons 1.984694e-04   p_joint 9.051020e-04

Joint ci ratio: 9.284480e-02	ci left: 8.620787e-04	ci right 9.465062e-04	k: 1780	n:1970000
Cons ci ratio: 1.979701e-01	ci left: 1.792910e-04	ci right 2.191569e-04	k: 391	n:1970000
KS ci ratio: 2.666468e-03	ci left: 5.224454e-01	ci right 5.238408e-01	k: 1030592	n:1970000
OR8K5   1970000 perm   2043 sec   (964 perm/sec)   p_kst 5.231431e-01   p_cons 1.984772e-04   p_joint 9.035533e-04

Joint ci ratio: 9.253352e-02	ci left: 8.636449e-04	ci right 9.479269e-04	k: 1792	n:1980000
Cons ci ratio: 1.977182e-01	ci left: 1.788655e-04	ci right 2.185801e-04	k: 392	n:1980000
KS ci ratio: 2.659533e-03	ci left: 5.224833e-01	ci right 5.238752e-01	k: 1035895	n:1980000
OR8K5   1980000 perm   2059 sec   (962 perm/sec)   p_kst 5.231793e-01   p_cons 1.979798e-04   p_joint 9.050505e-04

Joint ci ratio: 9.235347e-02	ci left: 8.627412e-04	ci right 9.467623e-04	k: 1799	n:1990000
Cons ci ratio: 1.972170e-01	ci left: 1.789220e-04	ci right 2.185364e-04	k: 394	n:1990000
KS ci ratio: 2.652695e-03	ci left: 5.225128e-01	ci right 5.239012e-01	k: 1041182	n:1990000
OR8K5   1990000 perm   2075 sec   (959 perm/sec)   p_kst 5.232070e-01   p_cons 1.979899e-04   p_joint 9.040201e-04

Joint ci ratio: 9.209797e-02	ci left: 8.633122e-04	ci right 9.471438e-04	k: 1809	n:2000000
Cons ci ratio: 1.962258e-01	ci left: 1.799289e-04	ci right 2.195421e-04	k: 398	n:2000000
KS ci ratio: 2.646188e-03	ci left: 5.224895e-01	ci right 5.238744e-01	k: 1046364	n:2000000
OR8K5   2000000 perm   2093 sec   (956 perm/sec)   p_kst 5.231820e-01   p_cons 1.990000e-04   p_joint 9.045000e-04

Joint ci ratio: 9.199649e-02	ci left: 8.609613e-04	ci right 9.444675e-04	k: 1813	n:2010000
Cons ci ratio: 1.959804e-01	ci left: 1.795068e-04	ci right 2.189717e-04	k: 399	n:2010000
KS ci ratio: 2.639702e-03	ci left: 5.224714e-01	ci right 5.238529e-01	k: 1051556	n:2010000
OR8K5   2010000 perm   2125 sec   (946 perm/sec)   p_kst 5.231622e-01   p_cons 1.985075e-04   p_joint 9.019900e-04

Joint ci ratio: 9.227715e-02	ci left: 8.513789e-04	ci right 9.342212e-04	k: 1802	n:2020000
Cons ci ratio: 1.954923e-01	ci left: 1.795597e-04	ci right 2.189263e-04	k: 401	n:2020000
KS ci ratio: 2.632827e-03	ci left: 5.225362e-01	ci right 5.239142e-01	k: 1056915	n:2020000
OR8K5   2020000 perm   2167 sec   (932 perm/sec)   p_kst 5.232252e-01   p_cons 1.985149e-04   p_joint 8.920792e-04

Joint ci ratio: 9.194618e-02	ci left: 8.534414e-04	ci right 9.361705e-04	k: 1815	n:2030000
Cons ci ratio: 1.950078e-01	ci left: 1.796123e-04	ci right 2.188811e-04	k: 403	n:2030000
KS ci ratio: 2.626312e-03	ci left: 5.225422e-01	ci right 5.239168e-01	k: 1062156	n:2030000
OR8K5   2030000 perm   2200 sec   (923 perm/sec)   p_kst 5.232296e-01   p_cons 1.985222e-04   p_joint 8.940887e-04

Joint ci ratio: 9.176953e-02	ci left: 8.526104e-04	ci right 9.350916e-04	k: 1822	n:2040000
Cons ci ratio: 1.942878e-01	ci left: 1.801307e-04	ci right 2.193503e-04	k: 406	n:2040000
KS ci ratio: 2.619898e-03	ci left: 5.225379e-01	ci right 5.239091e-01	k: 1067376	n:2040000
OR8K5   2040000 perm   2225 sec   (917 perm/sec)   p_kst 5.232235e-01   p_cons 1.990196e-04   p_joint 8.931373e-04

Joint ci ratio: 9.166912e-02	ci left: 8.503577e-04	ci right 9.325262e-04	k: 1826	n:2050000
Cons ci ratio: 1.940496e-01	ci left: 1.797161e-04	ci right 2.187918e-04	k: 407	n:2050000
KS ci ratio: 2.613391e-03	ci left: 5.225604e-01	ci right 5.239283e-01	k: 1072651	n:2050000
OR8K5   2050000 perm   2241 sec   (915 perm/sec)   p_kst 5.232444e-01   p_cons 1.985366e-04   p_joint 8.907317e-04

Joint ci ratio: 9.159409e-02	ci left: 8.476526e-04	ci right 9.294891e-04	k: 1829	n:2060000
Cons ci ratio: 1.935757e-01	ci left: 1.797675e-04	ci right 2.187477e-04	k: 409	n:2060000
KS ci ratio: 2.606978e-03	ci left: 5.225740e-01	ci right 5.239386e-01	k: 1077908	n:2060000
OR8K5   2060000 perm   2257 sec   (913 perm/sec)   p_kst 5.232563e-01   p_cons 1.985437e-04   p_joint 8.878641e-04

Joint ci ratio: 9.161934e-02	ci left: 8.430856e-04	ci right 9.245048e-04	k: 1828	n:2070000
Cons ci ratio: 1.933401e-01	ci left: 1.793588e-04	ci right 2.181974e-04	k: 410	n:2070000
KS ci ratio: 2.600531e-03	ci left: 5.226029e-01	ci right 5.239642e-01	k: 1083197	n:2070000
OR8K5   2070000 perm   2288 sec   (905 perm/sec)   p_kst 5.232836e-01   p_cons 1.980676e-04   p_joint 8.830918e-04

Joint ci ratio: 9.355952e-02	ci left: 8.038087e-04	ci right 8.831686e-04	k: 1753	n:2080000
Cons ci ratio: 1.926383e-01	ci left: 1.798691e-04	ci right 2.186603e-04	k: 413	n:2080000
KS ci ratio: 2.594332e-03	ci left: 5.225931e-01	ci right 5.239511e-01	k: 1088406	n:2080000
OR8K5   2080000 perm   2305 sec   (902 perm/sec)   p_kst 5.232721e-01   p_cons 1.985577e-04   p_joint 8.427885e-04

Joint ci ratio: 9.337342e-02	ci left: 8.032337e-04	ci right 8.823705e-04	k: 1760	n:2090000
Cons ci ratio: 1.924061e-01	ci left: 1.794639e-04	ci right 2.181155e-04	k: 414	n:2090000
KS ci ratio: 2.588180e-03	ci left: 5.225829e-01	ci right 5.239376e-01	k: 1093614	n:2090000
OR8K5   2090000 perm   2322 sec   (900 perm/sec)   p_kst 5.232603e-01   p_cons 1.980861e-04   p_joint 8.421053e-04

Joint ci ratio: 9.308309e-02	ci left: 8.045247e-04	ci right 8.835289e-04	k: 1771	n:2100000
Cons ci ratio: 1.924062e-01	ci left: 1.786093e-04	ci right 2.170769e-04	k: 414	n:2100000
KS ci ratio: 2.582117e-03	ci left: 5.225637e-01	ci right 5.239153e-01	k: 1098803	n:2100000
OR8K5   2100000 perm   2339 sec   (898 perm/sec)   p_kst 5.232395e-01   p_cons 1.971429e-04   p_joint 8.433333e-04

Joint ci ratio: 9.284759e-02	ci left: 8.048781e-04	ci right 8.837061e-04	k: 1780	n:2110000
Cons ci ratio: 1.919442e-01	ci left: 1.786650e-04	ci right 2.170415e-04	k: 416	n:2110000
KS ci ratio: 2.575897e-03	ci left: 5.225836e-01	ci right 5.239319e-01	k: 1104074	n:2110000
OR8K5   2110000 perm   2356 sec   (896 perm/sec)   p_kst 5.232578e-01   p_cons 1.971564e-04   p_joint 8.436019e-04

Joint ci ratio: 9.258799e-02	ci left: 8.056891e-04	ci right 8.843640e-04	k: 1790	n:2120000
Cons ci ratio: 1.912574e-01	ci left: 1.791695e-04	ci right 2.175006e-04	k: 419	n:2120000
KS ci ratio: 2.569833e-03	ci left: 5.225817e-01	ci right 5.239268e-01	k: 1109299	n:2120000
OR8K5   2120000 perm   2372 sec   (894 perm/sec)   p_kst 5.232542e-01   p_cons 1.976415e-04   p_joint 8.443396e-04

Joint ci ratio: 8.311651e-02	ci left: 9.998253e-04	ci right 1.086986e-03	k: 2221	n:2130000
Cons ci ratio: 1.896830e-01	ci left: 1.814580e-04	ci right 2.199224e-04	k: 426	n:2130000
KS ci ratio: 2.563802e-03	ci left: 5.225816e-01	ci right 5.239235e-01	k: 1114528	n:2130000
OR8K5   2130000 perm   2389 sec   (892 perm/sec)   p_kst 5.232526e-01   p_cons 2.000000e-04   p_joint 1.042723e-03

Joint ci ratio: 8.293012e-02	ci left: 9.997291e-04	ci right 1.086677e-03	k: 2231	n:2140000
Cons ci ratio: 1.896831e-01	ci left: 1.806101e-04	ci right 2.188947e-04	k: 426	n:2140000
KS ci ratio: 2.557875e-03	ci left: 5.225693e-01	ci right 5.239082e-01	k: 1119731	n:2140000
OR8K5   2140000 perm   2406 sec   (890 perm/sec)   p_kst 5.232388e-01   p_cons 1.990654e-04   p_joint 1.042523e-03

Joint ci ratio: 8.298616e-02	ci left: 9.937126e-04	ci right 1.080199e-03	k: 2228	n:2150000
Cons ci ratio: 1.894614e-01	ci left: 1.802131e-04	ci right 2.183638e-04	k: 427	n:2150000
KS ci ratio: 2.552159e-03	ci left: 5.225242e-01	ci right 5.238599e-01	k: 1124863	n:2150000
OR8K5   2150000 perm   2422 sec   (888 perm/sec)   p_kst 5.231921e-01   p_cons 1.986047e-04   p_joint 1.036279e-03

Joint ci ratio: 8.287478e-02	ci left: 9.918322e-04	ci right 1.078033e-03	k: 2234	n:2160000
Cons ci ratio: 1.890203e-01	ci left: 1.802608e-04	ci right 2.183226e-04	k: 429	n:2160000
KS ci ratio: 2.546329e-03	ci left: 5.225091e-01	ci right 5.238417e-01	k: 1130059	n:2160000
OR8K5   2160000 perm   2439 sec   (886 perm/sec)   p_kst 5.231755e-01   p_cons 1.986111e-04   p_joint 1.034259e-03

Joint ci ratio: 8.267158e-02	ci left: 9.922258e-04	ci right 1.078239e-03	k: 2245	n:2170000
Cons ci ratio: 1.890204e-01	ci left: 1.794301e-04	ci right 2.173165e-04	k: 429	n:2170000
KS ci ratio: 2.540588e-03	ci left: 5.224845e-01	ci right 5.238140e-01	k: 1135234	n:2170000
OR8K5   2170000 perm   2456 sec   (884 perm/sec)   p_kst 5.231493e-01   p_cons 1.976959e-04   p_joint 1.034562e-03

Joint ci ratio: 8.250646e-02	ci left: 9.917175e-04	ci right 1.077507e-03	k: 2254	n:2180000
Cons ci ratio: 1.885824e-01	ci left: 1.794811e-04	ci right 2.172804e-04	k: 431	n:2180000
KS ci ratio: 2.534630e-03	ci left: 5.225106e-01	ci right 5.238371e-01	k: 1140519	n:2180000
OR8K5   2180000 perm   2472 sec   (882 perm/sec)   p_kst 5.231739e-01   p_cons 1.977064e-04   p_joint 1.033945e-03

Joint ci ratio: 8.225146e-02	ci left: 9.934501e-04	ci right 1.079111e-03	k: 2268	n:2190000
Cons ci ratio: 1.877152e-01	ci left: 1.804020e-04	ci right 2.182006e-04	k: 435	n:2190000
KS ci ratio: 2.528850e-03	ci left: 5.225095e-01	ci right 5.238329e-01	k: 1145745	n:2190000
OR8K5   2190000 perm   2489 sec   (880 perm/sec)   p_kst 5.231712e-01   p_cons 1.986301e-04   p_joint 1.035616e-03

Joint ci ratio: 8.269059e-02	ci left: 9.782500e-04	ci right 1.063072e-03	k: 2244	n:2200000
Cons ci ratio: 1.875004e-01	ci left: 1.800152e-04	ci right 2.176847e-04	k: 436	n:2200000
KS ci ratio: 2.523247e-03	ci left: 5.224811e-01	ci right 5.238016e-01	k: 1150911	n:2200000
OR8K5   2200000 perm   2506 sec   (878 perm/sec)   p_kst 5.231414e-01   p_cons 1.981818e-04   p_joint 1.020000e-03

Joint ci ratio: 8.243389e-02	ci left: 9.800276e-04	ci right 1.064728e-03	k: 2258	n:2210000
Cons ci ratio: 1.868600e-01	ci left: 1.804945e-04	ci right 2.181207e-04	k: 439	n:2210000
KS ci ratio: 2.517635e-03	ci left: 5.224621e-01	ci right 5.237795e-01	k: 1156097	n:2210000
OR8K5   2210000 perm   2523 sec   (876 perm/sec)   p_kst 5.231208e-01   p_cons 1.986425e-04   p_joint 1.021719e-03

Joint ci ratio: 8.221577e-02	ci left: 9.809072e-04	ci right 1.065448e-03	k: 2270	n:2220000
Cons ci ratio: 1.868601e-01	ci left: 1.796815e-04	ci right 2.171381e-04	k: 439	n:2220000
KS ci ratio: 2.511970e-03	ci left: 5.224612e-01	ci right 5.237757e-01	k: 1161323	n:2220000
OR8K5   2220000 perm   2540 sec   (874 perm/sec)   p_kst 5.231185e-01   p_cons 1.977477e-04   p_joint 1.022523e-03

Joint ci ratio: 8.198141e-02	ci left: 9.822185e-04	ci right 1.066620e-03	k: 2283	n:2230000
Cons ci ratio: 1.862263e-01	ci left: 1.801582e-04	ci right 2.175725e-04	k: 442	n:2230000
KS ci ratio: 2.506531e-03	ci left: 5.224231e-01	ci right 5.237347e-01	k: 1166466	n:2230000
OR8K5   2230000 perm   2557 sec   (872 perm/sec)   p_kst 5.230789e-01   p_cons 1.982063e-04   p_joint 1.023767e-03

Joint ci ratio: 8.176686e-02	ci left: 9.830811e-04	ci right 1.067325e-03	k: 2295	n:2240000
Cons ci ratio: 1.855989e-01	ci left: 1.806309e-04	ci right 2.180027e-04	k: 445	n:2240000
KS ci ratio: 2.501023e-03	ci left: 5.224059e-01	ci right 5.237145e-01	k: 1171655	n:2240000
OR8K5   2240000 perm   2574 sec   (870 perm/sec)   p_kst 5.230603e-01   p_cons 1.986607e-04   p_joint 1.024554e-03

Joint ci ratio: 8.153631e-02	ci left: 9.843716e-04	ci right 1.068477e-03	k: 2308	n:2250000
Cons ci ratio: 1.845670e-01	ci left: 1.819474e-04	ci right 2.193589e-04	k: 450	n:2250000
KS ci ratio: 2.495449e-03	ci left: 5.224093e-01	ci right 5.237150e-01	k: 1176890	n:2250000
OR8K5   2250000 perm   2592 sec   (868 perm/sec)   p_kst 5.230622e-01   p_cons 2.000000e-04   p_joint 1.025778e-03

Joint ci ratio: 8.137789e-02	ci left: 9.839172e-04	ci right 1.067812e-03	k: 2317	n:2260000
Cons ci ratio: 1.841592e-01	ci left: 1.819864e-04	ci right 2.193140e-04	k: 452	n:2260000
KS ci ratio: 2.490074e-03	ci left: 5.223804e-01	ci right 5.236832e-01	k: 1182052	n:2260000
OR8K5   2260000 perm   2609 sec   (866 perm/sec)   p_kst 5.230319e-01   p_cons 2.000000e-04   p_joint 1.025221e-03

Joint ci ratio: 8.123786e-02	ci left: 9.830353e-04	ci right 1.066704e-03	k: 2325	n:2270000
Cons ci ratio: 1.837540e-01	ci left: 1.820252e-04	ci right 2.192694e-04	k: 454	n:2270000
KS ci ratio: 2.484472e-03	ci left: 5.224042e-01	ci right 5.237041e-01	k: 1187333	n:2270000
OR8K5   2270000 perm   2626 sec   (864 perm/sec)   p_kst 5.230542e-01   p_cons 2.000000e-04   p_joint 1.024229e-03

Joint ci ratio: 8.104644e-02	ci left: 9.834504e-04	ci right 1.066948e-03	k: 2336	n:2280000
Cons ci ratio: 1.829515e-01	ci left: 1.829007e-04	ci right 2.201425e-04	k: 458	n:2280000
KS ci ratio: 2.479127e-03	ci left: 5.223834e-01	ci right 5.236805e-01	k: 1192513	n:2280000
OR8K5   2280000 perm   2644 sec   (862 perm/sec)   p_kst 5.230320e-01   p_cons 2.008772e-04   p_joint 1.024561e-03

Joint ci ratio: 8.085636e-02	ci left: 9.838621e-04	ci right 1.067190e-03	k: 2347	n:2290000
Cons ci ratio: 1.823565e-01	ci left: 1.833522e-04	ci right 2.205511e-04	k: 461	n:2290000
KS ci ratio: 2.473592e-03	ci left: 5.224083e-01	ci right 5.237025e-01	k: 1197797	n:2290000
OR8K5   2290000 perm   2662 sec   (860 perm/sec)   p_kst 5.230555e-01   p_cons 2.013100e-04   p_joint 1.024891e-03

Joint ci ratio: 8.106416e-02	ci left: 9.744725e-04	ci right 1.057227e-03	k: 2335	n:2300000
Cons ci ratio: 1.823565e-01	ci left: 1.825550e-04	ci right 2.195922e-04	k: 461	n:2300000
KS ci ratio: 2.468167e-03	ci left: 5.224182e-01	ci right 5.237096e-01	k: 1203047	n:2300000
OR8K5   2300000 perm   2679 sec   (858 perm/sec)   p_kst 5.230639e-01   p_cons 2.004348e-04   p_joint 1.015217e-03

Joint ci ratio: 8.176814e-02	ci left: 9.532901e-04	ci right 1.034982e-03	k: 2295	n:2310000
Cons ci ratio: 1.817673e-01	ci left: 1.830042e-04	ci right 2.199994e-04	k: 464	n:2310000
KS ci ratio: 2.462803e-03	ci left: 5.224228e-01	ci right 5.237114e-01	k: 1208285	n:2310000
OR8K5   2310000 perm   2697 sec   (857 perm/sec)   p_kst 5.230671e-01   p_cons 2.008658e-04   p_joint 9.935065e-04

Joint ci ratio: 8.162609e-02	ci left: 9.525589e-04	ci right 1.034040e-03	k: 2303	n:2320000
Cons ci ratio: 1.813777e-01	ci left: 1.830383e-04	ci right 2.199523e-04	k: 466	n:2320000
KS ci ratio: 2.457496e-03	ci left: 5.224230e-01	ci right 5.237088e-01	k: 1213513	n:2320000
OR8K5   2320000 perm   2715 sec   (855 perm/sec)   p_kst 5.230659e-01   p_cons 2.008621e-04   p_joint 9.926724e-04

Joint ci ratio: 8.148478e-02	ci left: 9.518341e-04	ci right 1.033105e-03	k: 2311	n:2330000
Cons ci ratio: 1.809905e-01	ci left: 1.830722e-04	ci right 2.199056e-04	k: 468	n:2330000
KS ci ratio: 2.452121e-03	ci left: 5.224438e-01	ci right 5.237269e-01	k: 1218789	n:2330000
OR8K5   2330000 perm   2732 sec   (853 perm/sec)   p_kst 5.230854e-01   p_cons 2.008584e-04   p_joint 9.918455e-04

Joint ci ratio: 8.132666e-02	ci left: 9.515343e-04	ci right 1.032615e-03	k: 2320	n:2340000
Cons ci ratio: 1.809906e-01	ci left: 1.822898e-04	ci right 2.189658e-04	k: 468	n:2340000
KS ci ratio: 2.446965e-03	ci left: 5.224269e-01	ci right 5.237072e-01	k: 1223977	n:2340000
OR8K5   2340000 perm   2750 sec   (851 perm/sec)   p_kst 5.230671e-01   p_cons 2.000000e-04   p_joint 9.914530e-04

Joint ci ratio: 8.118689e-02	ci left: 9.508203e-04	ci right 1.031694e-03	k: 2328	n:2350000
Cons ci ratio: 1.806059e-01	ci left: 1.823266e-04	ci right 2.189236e-04	k: 470	n:2350000
KS ci ratio: 2.441942e-03	ci left: 5.223897e-01	ci right 5.236673e-01	k: 1229117	n:2350000
OR8K5   2350000 perm   2768 sec   (849 perm/sec)   p_kst 5.230285e-01   p_cons 2.000000e-04   p_joint 9.906383e-04

Joint ci ratio: 8.192989e-02	ci left: 9.293573e-04	ci right 1.009163e-03	k: 2286	n:2360000
Cons ci ratio: 1.804145e-01	ci left: 1.819587e-04	ci right 2.184388e-04	k: 471	n:2360000
KS ci ratio: 2.436764e-03	ci left: 5.223909e-01	ci right 5.236658e-01	k: 1234347	n:2360000
OR8K5   2360000 perm   2786 sec   (847 perm/sec)   p_kst 5.230284e-01   p_cons 1.995763e-04   p_joint 9.686441e-04

Joint ci ratio: 8.180484e-02	ci left: 9.283291e-04	ci right 1.007919e-03	k: 2293	n:2370000
Cons ci ratio: 1.800335e-01	ci left: 1.819967e-04	ci right 2.183990e-04	k: 473	n:2370000
KS ci ratio: 2.431563e-03	ci left: 5.224035e-01	ci right 5.236757e-01	k: 1239604	n:2370000
OR8K5   2370000 perm   2804 sec   (845 perm/sec)   p_kst 5.230397e-01   p_cons 1.995781e-04   p_joint 9.675105e-04

Joint ci ratio: 8.150327e-02	ci left: 9.314256e-04	ci right 1.010973e-03	k: 2310	n:2380000
Cons ci ratio: 1.800336e-01	ci left: 1.812320e-04	ci right 2.174814e-04	k: 473	n:2380000
KS ci ratio: 2.426489e-03	ci left: 5.223967e-01	ci right 5.236662e-01	k: 1244815	n:2380000
OR8K5   2380000 perm   2823 sec   (843 perm/sec)   p_kst 5.230315e-01   p_cons 1.987395e-04   p_joint 9.705882e-04

Joint ci ratio: 8.127494e-02	ci left: 9.328571e-04	ci right 1.012293e-03	k: 2323	n:2390000
Cons ci ratio: 1.796550e-01	ci left: 1.812729e-04	ci right 2.174459e-04	k: 475	n:2390000
KS ci ratio: 2.421310e-03	ci left: 5.224180e-01	ci right 5.236849e-01	k: 1250093	n:2390000
OR8K5   2390000 perm   2841 sec   (841 perm/sec)   p_kst 5.230515e-01   p_cons 1.987448e-04   p_joint 9.719665e-04

Joint ci ratio: 8.113544e-02	ci left: 9.322358e-04	ci right 1.011476e-03	k: 2331	n:2400000
Cons ci ratio: 1.792787e-01	ci left: 1.813135e-04	ci right 2.174106e-04	k: 477	n:2400000
KS ci ratio: 2.416235e-03	ci left: 5.224245e-01	ci right 5.236887e-01	k: 1255336	n:2400000
OR8K5   2400000 perm   2859 sec   (839 perm/sec)   p_kst 5.230567e-01   p_cons 1.987500e-04   p_joint 9.712500e-04

Joint ci ratio: 8.094474e-02	ci left: 9.328395e-04	ci right 1.011936e-03	k: 2342	n:2410000
Cons ci ratio: 1.789048e-01	ci left: 1.813538e-04	ci right 2.173755e-04	k: 479	n:2410000
KS ci ratio: 2.411236e-03	ci left: 5.224219e-01	ci right 5.236835e-01	k: 1260557	n:2410000
OR8K5   2410000 perm   2878 sec   (838 perm/sec)   p_kst 5.230527e-01   p_cons 1.987552e-04   p_joint 9.717842e-04

Joint ci ratio: 8.169878e-02	ci left: 9.115771e-04	ci right 9.896251e-04	k: 2299	n:2420000
Cons ci ratio: 1.779802e-01	ci left: 1.825783e-04	ci right 2.186355e-04	k: 484	n:2420000
KS ci ratio: 2.406236e-03	ci left: 5.224259e-01	ci right 5.236848e-01	k: 1265794	n:2420000
OR8K5   2420000 perm   2896 sec   (836 perm/sec)   p_kst 5.230554e-01   p_cons 2.000000e-04   p_joint 9.500000e-04

Joint ci ratio: 8.221941e-02	ci left: 8.961359e-04	ci right 9.733742e-04	k: 2270	n:2430000
Cons ci ratio: 1.777970e-01	ci left: 1.822201e-04	ci right 2.181656e-04	k: 485	n:2430000
KS ci ratio: 2.401261e-03	ci left: 5.224310e-01	ci right 5.236874e-01	k: 1271034	n:2430000
OR8K5   2430000 perm   2915 sec   (834 perm/sec)   p_kst 5.230593e-01   p_cons 1.995885e-04   p_joint 9.341564e-04

Joint ci ratio: 8.196707e-02	ci left: 8.980831e-04	ci right 9.752403e-04	k: 2284	n:2440000
Cons ci ratio: 1.776144e-01	ci left: 1.818649e-04	ci right 2.176996e-04	k: 486	n:2440000
KS ci ratio: 2.396402e-03	ci left: 5.224186e-01	ci right 5.236724e-01	k: 1276231	n:2440000
OR8K5   2440000 perm   2933 sec   (832 perm/sec)   p_kst 5.230455e-01   p_cons 1.991803e-04   p_joint 9.360656e-04

Joint ci ratio: 8.189551e-02	ci left: 8.960167e-04	ci right 9.729259e-04	k: 2288	n:2450000
Cons ci ratio: 1.770698e-01	ci left: 1.822927e-04	ci right 2.180898e-04	k: 489	n:2450000
KS ci ratio: 2.391511e-03	ci left: 5.224188e-01	ci right 5.236701e-01	k: 1281459	n:2450000
OR8K5   2450000 perm   2952 sec   (830 perm/sec)   p_kst 5.230445e-01   p_cons 1.995918e-04   p_joint 9.338776e-04

Joint ci ratio: 8.168164e-02	ci left: 8.971526e-04	ci right 9.739487e-04	k: 2300	n:2460000
Cons ci ratio: 1.767095e-01	ci left: 1.823287e-04	ci right 2.180522e-04	k: 491	n:2460000
KS ci ratio: 2.386601e-03	ci left: 5.224293e-01	ci right 5.236780e-01	k: 1286712	n:2460000
OR8K5   2460000 perm   2971 sec   (828 perm/sec)   p_kst 5.230537e-01   p_cons 1.995935e-04   p_joint 9.349593e-04

Joint ci ratio: 8.152237e-02	ci left: 8.970898e-04	ci right 9.737236e-04	k: 2309	n:2470000
Cons ci ratio: 1.758183e-01	ci left: 1.835255e-04	ci right 2.192829e-04	k: 496	n:2470000
KS ci ratio: 2.381718e-03	ci left: 5.224404e-01	ci right 5.236866e-01	k: 1291967	n:2470000
OR8K5   2470000 perm   2990 sec   (826 perm/sec)   p_kst 5.230636e-01   p_cons 2.008097e-04   p_joint 9.348178e-04

Joint ci ratio: 8.150487e-02	ci left: 8.938674e-04	ci right 9.702089e-04	k: 2310	n:2480000
Cons ci ratio: 1.754656e-01	ci left: 1.835565e-04	ci right 2.192406e-04	k: 498	n:2480000
KS ci ratio: 2.376824e-03	ci left: 5.224600e-01	ci right 5.237037e-01	k: 1297243	n:2480000
OR8K5   2480000 perm   3009 sec   (824 perm/sec)   p_kst 5.230819e-01   p_cons 2.008065e-04   p_joint 9.314516e-04

Joint ci ratio: 8.148738e-02	ci left: 8.906710e-04	ci right 9.667223e-04	k: 2311	n:2490000
Cons ci ratio: 1.751150e-01	ci left: 1.835873e-04	ci right 2.191985e-04	k: 500	n:2490000
KS ci ratio: 2.371966e-03	ci left: 5.224782e-01	ci right 5.237193e-01	k: 1302516	n:2490000
OR8K5   2490000 perm   3028 sec   (822 perm/sec)   p_kst 5.230988e-01   p_cons 2.008032e-04   p_joint 9.281124e-04

Joint ci ratio: 8.129419e-02	ci left: 8.914188e-04	ci right 9.673449e-04	k: 2322	n:2500000
Cons ci ratio: 1.745930e-01	ci left: 1.840005e-04	ci right 2.195742e-04	k: 503	n:2500000
KS ci ratio: 2.367183e-03	ci left: 5.224866e-01	ci right 5.237253e-01	k: 1307765	n:2500000
OR8K5   2500000 perm   3046 sec   (821 perm/sec)   p_kst 5.231060e-01   p_cons 2.012000e-04   p_joint 9.288000e-04

Joint ci ratio: 8.111976e-02	ci left: 8.917704e-04	ci right 9.675559e-04	k: 2332	n:2510000
Cons ci ratio: 1.744201e-01	ci left: 1.836484e-04	ci right 2.191152e-04	k: 504	n:2510000
KS ci ratio: 2.362444e-03	ci left: 5.224918e-01	ci right 5.237280e-01	k: 1313006	n:2510000
OR8K5   2510000 perm   3065 sec   (819 perm/sec)   p_kst 5.231100e-01   p_cons 2.007968e-04   p_joint 9.290837e-04

Joint ci ratio: 8.103305e-02	ci left: 8.901755e-04	ci right 9.657408e-04	k: 2337	n:2520000
Cons ci ratio: 1.742477e-01	ci left: 1.832991e-04	ci right 2.186598e-04	k: 505	n:2520000
KS ci ratio: 2.357794e-03	ci left: 5.224843e-01	ci right 5.237180e-01	k: 1318215	n:2520000
OR8K5   2520000 perm   3085 sec   (817 perm/sec)   p_kst 5.231012e-01   p_cons 2.003968e-04   p_joint 9.273810e-04

Joint ci ratio: 8.089479e-02	ci left: 8.897551e-04	ci right 9.651497e-04	k: 2345	n:2530000
Cons ci ratio: 1.740758e-01	ci left: 1.829527e-04	ci right 2.182080e-04	k: 506	n:2530000
KS ci ratio: 2.353100e-03	ci left: 5.224918e-01	ci right 5.237231e-01	k: 1323462	n:2530000
OR8K5   2530000 perm   3104 sec   (815 perm/sec)   p_kst 5.231075e-01   p_cons 2.000000e-04   p_joint 9.268775e-04

Joint ci ratio: 8.077440e-02	ci left: 8.889523e-04	ci right 9.641615e-04	k: 2352	n:2540000
Cons ci ratio: 1.737335e-01	ci left: 1.829855e-04	ci right 2.181705e-04	k: 508	n:2540000
KS ci ratio: 2.348498e-03	ci left: 5.224855e-01	ci right 5.237144e-01	k: 1328674	n:2540000
OR8K5   2540000 perm   3124 sec   (813 perm/sec)   p_kst 5.231000e-01   p_cons 2.000000e-04   p_joint 9.259843e-04

Joint ci ratio: 8.195078e-02	ci left: 8.597257e-04	ci right 9.335721e-04	k: 2285	n:2550000
Cons ci ratio: 1.735631e-01	ci left: 1.826430e-04	ci right 2.177242e-04	k: 509	n:2550000
KS ci ratio: 2.343898e-03	ci left: 5.224848e-01	ci right 5.237112e-01	k: 1333900	n:2550000
OR8K5   2550000 perm   3143 sec   (811 perm/sec)   p_kst 5.230980e-01   p_cons 1.996078e-04   p_joint 8.960784e-04

Joint ci ratio: 8.267810e-02	ci left: 8.410637e-04	ci right 9.139792e-04	k: 2245	n:2560000
Cons ci ratio: 1.727184e-01	ci left: 1.837981e-04	ci right 2.189113e-04	k: 514	n:2560000
KS ci ratio: 2.339374e-03	ci left: 5.224735e-01	ci right 5.236976e-01	k: 1339099	n:2560000
OR8K5   2560000 perm   3162 sec   (810 perm/sec)   p_kst 5.230855e-01   p_cons 2.007813e-04   p_joint 8.769531e-04

Joint ci ratio: 8.338728e-02	ci left: 8.233118e-04	ci right 8.953303e-04	k: 2207	n:2570000
Cons ci ratio: 1.720515e-01	ci left: 1.845722e-04	ci right 2.196830e-04	k: 518	n:2570000
KS ci ratio: 2.334744e-03	ci left: 5.224907e-01	ci right 5.237124e-01	k: 1344371	n:2570000
OR8K5   2570000 perm   3181 sec   (808 perm/sec)   p_kst 5.231016e-01   p_cons 2.015564e-04   p_joint 8.587549e-04

Joint ci ratio: 8.336853e-02	ci left: 8.205001e-04	ci right 8.922557e-04	k: 2208	n:2580000
Cons ci ratio: 1.712286e-01	ci left: 1.857115e-04	ci right 2.208527e-04	k: 523	n:2580000
KS ci ratio: 2.330224e-03	ci left: 5.224899e-01	ci right 5.237092e-01	k: 1349597	n:2580000
OR8K5   2580000 perm   3201 sec   (806 perm/sec)   p_kst 5.230996e-01   p_cons 2.027132e-04   p_joint 8.558140e-04

Joint ci ratio: 8.378729e-02	ci left: 8.090153e-04	ci right 8.801393e-04	k: 2186	n:2590000
Cons ci ratio: 1.707405e-01	ci left: 1.861032e-04	ci right 2.212078e-04	k: 526	n:2590000
KS ci ratio: 2.325663e-03	ci left: 5.225035e-01	ci right 5.237204e-01	k: 1354860	n:2590000
OR8K5   2590000 perm   3221 sec   (804 perm/sec)   p_kst 5.231120e-01   p_cons 2.030888e-04   p_joint 8.440154e-04

Joint ci ratio: 8.357733e-02	ci left: 8.100459e-04	ci right 8.810734e-04	k: 2197	n:2600000
Cons ci ratio: 1.702565e-01	ci left: 1.864921e-04	ci right 2.215600e-04	k: 529	n:2600000
KS ci ratio: 2.321319e-03	ci left: 5.224761e-01	ci right 5.236907e-01	k: 1360017	n:2600000
OR8K5   2600000 perm   3240 sec   (802 perm/sec)   p_kst 5.230835e-01   p_cons 2.034615e-04   p_joint 8.450000e-04

Joint ci ratio: 8.350146e-02	ci left: 8.084428e-04	ci right 8.792622e-04	k: 2201	n:2610000
Cons ci ratio: 1.700962e-01	ci left: 1.861443e-04	ci right 2.211106e-04	k: 530	n:2610000
KS ci ratio: 2.316841e-03	ci left: 5.224831e-01	ci right 5.236954e-01	k: 1365263	n:2610000
OR8K5   2610000 perm   3260 sec   (801 perm/sec)   p_kst 5.230893e-01   p_cons 2.030651e-04   p_joint 8.432950e-04

Joint ci ratio: 8.336907e-02	ci left: 8.079732e-04	ci right 8.786338e-04	k: 2208	n:2620000
Cons ci ratio: 1.700962e-01	ci left: 1.854339e-04	ci right 2.202667e-04	k: 530	n:2620000
KS ci ratio: 2.312427e-03	ci left: 5.224816e-01	ci right 5.236916e-01	k: 1370487	n:2620000
OR8K5   2620000 perm   3280 sec   (799 perm/sec)   p_kst 5.230866e-01   p_cons 2.022901e-04   p_joint 8.427481e-04

Joint ci ratio: 8.319975e-02	ci left: 8.082518e-04	ci right 8.787862e-04	k: 2217	n:2630000
Cons ci ratio: 1.697768e-01	ci left: 1.854569e-04	ci right 2.202219e-04	k: 532	n:2630000
KS ci ratio: 2.307891e-03	ci left: 5.225121e-01	ci right 5.237198e-01	k: 1375795	n:2630000
OR8K5   2630000 perm   3300 sec   (797 perm/sec)   p_kst 5.231160e-01   p_cons 2.022814e-04   p_joint 8.429658e-04

Joint ci ratio: 7.672159e-02	ci left: 9.499711e-04	ci right 1.026130e-03	k: 2607	n:2640000
Cons ci ratio: 1.691432e-01	ci left: 1.862053e-04	ci right 2.209671e-04	k: 536	n:2640000
KS ci ratio: 2.303452e-03	ci left: 5.225272e-01	ci right 5.237326e-01	k: 1381063	n:2640000
OR8K5   2640000 perm   3320 sec   (795 perm/sec)   p_kst 5.231299e-01   p_cons 2.030303e-04   p_joint 9.875000e-04

Joint ci ratio: 7.660421e-02	ci left: 9.493473e-04	ci right 1.025335e-03	k: 2615	n:2650000
Cons ci ratio: 1.685167e-01	ci left: 1.869483e-04	ci right 2.217064e-04	k: 540	n:2650000
KS ci ratio: 2.299245e-03	ci left: 5.224973e-01	ci right 5.237004e-01	k: 1386212	n:2650000
OR8K5   2650000 perm   3341 sec   (793 perm/sec)   p_kst 5.230989e-01   p_cons 2.037736e-04   p_joint 9.867925e-04

Joint ci ratio: 7.650197e-02	ci left: 9.483595e-04	ci right 1.024162e-03	k: 2622	n:2660000
Cons ci ratio: 1.680514e-01	ci left: 1.873258e-04	ci right 2.220482e-04	k: 543	n:2660000
KS ci ratio: 2.294943e-03	ci left: 5.224932e-01	ci right 5.236940e-01	k: 1391429	n:2660000
OR8K5   2660000 perm   3361 sec   (791 perm/sec)   p_kst 5.230936e-01   p_cons 2.041353e-04   p_joint 9.857143e-04

Joint ci ratio: 7.664850e-02	ci left: 9.411339e-04	ci right 1.016509e-03	k: 2612	n:2670000
Cons ci ratio: 1.675899e-01	ci left: 1.877006e-04	ci right 2.223873e-04	k: 546	n:2670000
KS ci ratio: 2.290608e-03	ci left: 5.225014e-01	ci right 5.237000e-01	k: 1396679	n:2670000
OR8K5   2670000 perm   3381 sec   (790 perm/sec)   p_kst 5.231007e-01   p_cons 2.044944e-04   p_joint 9.782772e-04

Joint ci ratio: 7.657534e-02	ci left: 9.394521e-04	ci right 1.014618e-03	k: 2617	n:2680000
Cons ci ratio: 1.672844e-01	ci left: 1.877153e-04	ci right 2.223350e-04	k: 548	n:2680000
KS ci ratio: 2.286440e-03	ci left: 5.224787e-01	ci right 5.236750e-01	k: 1401846	n:2680000
OR8K5   2680000 perm   3401 sec   (788 perm/sec)   p_kst 5.230769e-01   p_cons 2.044776e-04   p_joint 9.764925e-04

Joint ci ratio: 7.641496e-02	ci left: 9.399707e-04	ci right 1.015014e-03	k: 2628	n:2690000
Cons ci ratio: 1.671322e-01	ci left: 1.873736e-04	ci right 2.218958e-04	k: 549	n:2690000
KS ci ratio: 2.282225e-03	ci left: 5.224713e-01	ci right 5.236654e-01	k: 1407054	n:2690000
OR8K5   2690000 perm   3422 sec   (786 perm/sec)   p_kst 5.230684e-01   p_cons 2.040892e-04   p_joint 9.769517e-04

Joint ci ratio: 7.622668e-02	ci left: 9.412123e-04	ci right 1.016161e-03	k: 2641	n:2700000
Cons ci ratio: 1.668292e-01	ci left: 1.873894e-04	ci right 2.218456e-04	k: 551	n:2700000
KS ci ratio: 2.278006e-03	ci left: 5.224700e-01	ci right 5.236618e-01	k: 1412278	n:2700000
OR8K5   2700000 perm   3443 sec   (784 perm/sec)   p_kst 5.230659e-01   p_cons 2.040741e-04   p_joint 9.781481e-04

Joint ci ratio: 7.611156e-02	ci left: 9.406350e-04	ci right 1.015420e-03	k: 2649	n:2710000
Cons ci ratio: 1.666783e-01	ci left: 1.870516e-04	ci right 2.214114e-04	k: 552	n:2710000
KS ci ratio: 2.273848e-03	ci left: 5.224605e-01	ci right 5.236502e-01	k: 1417480	n:2710000
OR8K5   2710000 perm   3463 sec   (783 perm/sec)   p_kst 5.230554e-01   p_cons 2.036900e-04   p_joint 9.774908e-04

Joint ci ratio: 7.602559e-02	ci left: 9.393406e-04	ci right 1.013934e-03	k: 2655	n:2720000
Cons ci ratio: 1.663777e-01	ci left: 1.870685e-04	ci right 2.213633e-04	k: 554	n:2720000
KS ci ratio: 2.269733e-03	ci left: 5.224463e-01	ci right 5.236338e-01	k: 1422669	n:2720000
OR8K5   2720000 perm   3484 sec   (781 perm/sec)   p_kst 5.230401e-01   p_cons 2.036765e-04   p_joint 9.761029e-04

Joint ci ratio: 7.588287e-02	ci left: 9.394933e-04	ci right 1.013953e-03	k: 2665	n:2730000
Cons ci ratio: 1.657813e-01	ci left: 1.877876e-04	ci right 2.220785e-04	k: 558	n:2730000
KS ci ratio: 2.265628e-03	ci left: 5.224351e-01	ci right 5.236205e-01	k: 1427866	n:2730000
OR8K5   2730000 perm   3504 sec   (779 perm/sec)   p_kst 5.230278e-01   p_cons 2.043956e-04   p_joint 9.761905e-04

Joint ci ratio: 7.572679e-02	ci left: 9.400030e-04	ci right 1.014343e-03	k: 2676	n:2740000
Cons ci ratio: 1.654856e-01	ci left: 1.878019e-04	ci right 2.220281e-04	k: 560	n:2740000
KS ci ratio: 2.261499e-03	ci left: 5.224343e-01	ci right 5.236175e-01	k: 1433091	n:2740000
OR8K5   2740000 perm   3525 sec   (777 perm/sec)   p_kst 5.230259e-01   p_cons 2.043796e-04   p_joint 9.766423e-04

Joint ci ratio: 7.565623e-02	ci left: 9.383685e-04	ci right 1.012507e-03	k: 2681	n:2750000
Cons ci ratio: 1.654856e-01	ci left: 1.871190e-04	ci right 2.212207e-04	k: 560	n:2750000
KS ci ratio: 2.257264e-03	ci left: 5.224618e-01	ci right 5.236428e-01	k: 1438394	n:2750000
OR8K5   2750000 perm   3545 sec   (776 perm/sec)   p_kst 5.230524e-01   p_cons 2.036364e-04   p_joint 9.749091e-04

Joint ci ratio: 7.612661e-02	ci left: 9.232387e-04	ci right 9.966554e-04	k: 2648	n:2760000
Cons ci ratio: 1.651914e-01	ci left: 1.871357e-04	ci right 2.211738e-04	k: 562	n:2760000
KS ci ratio: 2.253036e-03	ci left: 5.224928e-01	ci right 5.236717e-01	k: 1443707	n:2760000
OR8K5   2760000 perm   3566 sec   (774 perm/sec)   p_kst 5.230822e-01   p_cons 2.036232e-04   p_joint 9.594203e-04

Joint ci ratio: 7.595473e-02	ci left: 9.241555e-04	ci right 9.974718e-04	k: 2660	n:2770000
Cons ci ratio: 1.648988e-01	ci left: 1.871523e-04	ci right 2.211272e-04	k: 564	n:2770000
KS ci ratio: 2.248997e-03	ci left: 5.224867e-01	ci right 5.236634e-01	k: 1448918	n:2770000
OR8K5   2770000 perm   3587 sec   (772 perm/sec)   p_kst 5.230751e-01   p_cons 2.036101e-04   p_joint 9.602888e-04

Joint ci ratio: 7.582662e-02	ci left: 9.240072e-04	ci right 9.971826e-04	k: 2669	n:2780000
Cons ci ratio: 1.648989e-01	ci left: 1.864791e-04	ci right 2.203318e-04	k: 564	n:2780000
KS ci ratio: 2.245041e-03	ci left: 5.224673e-01	ci right 5.236420e-01	k: 1454092	n:2780000
OR8K5   2780000 perm   3608 sec   (770 perm/sec)   p_kst 5.230547e-01   p_cons 2.028777e-04   p_joint 9.600719e-04

Joint ci ratio: 7.576996e-02	ci left: 9.221018e-04	ci right 9.950694e-04	k: 2673	n:2790000
Cons ci ratio: 1.646078e-01	ci left: 1.864980e-04	ci right 2.202884e-04	k: 566	n:2790000
KS ci ratio: 2.240982e-03	ci left: 5.224754e-01	ci right 5.236479e-01	k: 1459342	n:2790000
OR8K5   2790000 perm   3629 sec   (769 perm/sec)   p_kst 5.230616e-01   p_cons 2.028674e-04   p_joint 9.580645e-04

Joint ci ratio: 7.561458e-02	ci left: 9.226628e-04	ci right 9.955185e-04	k: 2684	n:2800000
Cons ci ratio: 1.644628e-01	ci left: 1.861744e-04	ci right 2.198735e-04	k: 567	n:2800000
KS ci ratio: 2.236925e-03	ci left: 5.224880e-01	ci right 5.236584e-01	k: 1464605	n:2800000
OR8K5   2800000 perm   3651 sec   (767 perm/sec)   p_kst 5.230732e-01   p_cons 2.025000e-04   p_joint 9.585714e-04

Joint ci ratio: 7.551624e-02	ci left: 9.218233e-04	ci right 9.945139e-04	k: 2691	n:2810000
Cons ci ratio: 1.640302e-01	ci left: 1.865356e-04	ci right 2.202025e-04	k: 570	n:2810000
KS ci ratio: 2.232942e-03	ci left: 5.224888e-01	ci right 5.236571e-01	k: 1469835	n:2810000
OR8K5   2810000 perm   3672 sec   (765 perm/sec)   p_kst 5.230730e-01   p_cons 2.028470e-04   p_joint 9.576512e-04

Joint ci ratio: 7.553041e-02	ci left: 9.182065e-04	ci right 9.906260e-04	k: 2690	n:2820000
Cons ci ratio: 1.636010e-01	ci left: 1.868943e-04	ci right 2.205290e-04	k: 573	n:2820000
KS ci ratio: 2.228903e-03	ci left: 5.225069e-01	ci right 5.236732e-01	k: 1475114	n:2820000
OR8K5   2820000 perm   3693 sec   (764 perm/sec)   p_kst 5.230901e-01   p_cons 2.031915e-04   p_joint 9.539007e-04

Joint ci ratio: 7.543240e-02	ci left: 9.173887e-04	ci right 9.896457e-04	k: 2697	n:2830000
Cons ci ratio: 1.634587e-01	ci left: 1.865728e-04	ci right 2.201176e-04	k: 574	n:2830000
KS ci ratio: 2.224976e-03	ci left: 5.225048e-01	ci right 5.236690e-01	k: 1480336	n:2830000
OR8K5   2830000 perm   3715 sec   (762 perm/sec)   p_kst 5.230869e-01   p_cons 2.028269e-04   p_joint 9.530035e-04

Joint ci ratio: 7.601284e-02	ci left: 8.999949e-04	ci right 9.714515e-04	k: 2656	n:2840000
Cons ci ratio: 1.631751e-01	ci left: 1.865913e-04	ci right 2.200755e-04	k: 576	n:2840000
KS ci ratio: 2.220895e-03	ci left: 5.225418e-01	ci right 5.237039e-01	k: 1485669	n:2840000
OR8K5   2840000 perm   3736 sec   (760 perm/sec)   p_kst 5.231229e-01   p_cons 2.028169e-04   p_joint 9.352113e-04

Joint ci ratio: 7.587019e-02	ci left: 9.002792e-04	ci right 9.716183e-04	k: 2666	n:2850000
Cons ci ratio: 1.628931e-01	ci left: 1.866097e-04	ci right 2.200337e-04	k: 578	n:2850000
KS ci ratio: 2.217008e-03	ci left: 5.225399e-01	ci right 5.237000e-01	k: 1490892	n:2850000
OR8K5   2850000 perm   3757 sec   (759 perm/sec)   p_kst 5.231200e-01   p_cons 2.028070e-04   p_joint 9.354386e-04

Joint ci ratio: 7.574251e-02	ci left: 9.002186e-04	ci right 9.714275e-04	k: 2675	n:2860000
Cons ci ratio: 1.626125e-01	ci left: 1.866280e-04	ci right 2.199921e-04	k: 580	n:2860000
KS ci ratio: 2.213027e-03	ci left: 5.225640e-01	ci right 5.237220e-01	k: 1496189	n:2860000
OR8K5   2860000 perm   3779 sec   (757 perm/sec)   p_kst 5.231430e-01   p_cons 2.027972e-04   p_joint 9.353147e-04

Joint ci ratio: 7.562956e-02	ci left: 8.998166e-04	ci right 9.708830e-04	k: 2683	n:2870000
Cons ci ratio: 1.624727e-01	ci left: 1.863120e-04	ci right 2.195882e-04	k: 581	n:2870000
KS ci ratio: 2.209027e-03	ci left: 5.225969e-01	ci right 5.237529e-01	k: 1501512	n:2870000
OR8K5   2870000 perm   3800 sec   (755 perm/sec)   p_kst 5.231749e-01   p_cons 2.024390e-04   p_joint 9.348432e-04

Joint ci ratio: 7.544702e-02	ci left: 9.011209e-04	ci right 9.721109e-04	k: 2696	n:2880000
Cons ci ratio: 1.617792e-01	ci left: 1.873308e-04	ci right 2.206322e-04	k: 586	n:2880000
KS ci ratio: 2.205114e-03	ci left: 5.226146e-01	ci right 5.237687e-01	k: 1506792	n:2880000
OR8K5   2880000 perm   3821 sec   (754 perm/sec)   p_kst 5.231917e-01   p_cons 2.034722e-04   p_joint 9.361111e-04

Joint ci ratio: 7.534933e-02	ci left: 9.003793e-04	ci right 9.712151e-04	k: 2703	n:2890000
Cons ci ratio: 1.616416e-01	ci left: 1.870146e-04	ci right 2.202288e-04	k: 587	n:2890000
KS ci ratio: 2.201288e-03	ci left: 5.226174e-01	ci right 5.237694e-01	k: 1512029	n:2890000
OR8K5   2890000 perm   3843 sec   (752 perm/sec)   p_kst 5.231934e-01   p_cons 2.031142e-04   p_joint 9.352941e-04

Joint ci ratio: 7.526591e-02	ci left: 8.993045e-04	ci right 9.699740e-04	k: 2709	n:2900000
Cons ci ratio: 1.609586e-01	ci left: 1.880243e-04	ci right 2.212630e-04	k: 592	n:2900000
KS ci ratio: 2.197464e-03	ci left: 5.226243e-01	ci right 5.237743e-01	k: 1517278	n:2900000
OR8K5   2900000 perm   3865 sec   (750 perm/sec)   p_kst 5.231993e-01   p_cons 2.041379e-04   p_joint 9.341379e-04

Joint ci ratio: 7.512742e-02	ci left: 8.995859e-04	ci right 9.701418e-04	k: 2719	n:2910000
Cons ci ratio: 1.609587e-01	ci left: 1.873781e-04	ci right 2.205027e-04	k: 592	n:2910000
KS ci ratio: 2.193642e-03	ci left: 5.226349e-01	ci right 5.237829e-01	k: 1522538	n:2910000
OR8K5   2910000 perm   3886 sec   (749 perm/sec)   p_kst 5.232089e-01   p_cons 2.034364e-04   p_joint 9.343643e-04

Joint ci ratio: 7.496221e-02	ci left: 9.005377e-04	ci right 9.710060e-04	k: 2731	n:2920000
Cons ci ratio: 1.605530e-01	ci left: 1.877225e-04	ci right 2.208162e-04	k: 595	n:2920000
KS ci ratio: 2.189889e-03	ci left: 5.226345e-01	ci right 5.237806e-01	k: 1527766	n:2920000
OR8K5   2920000 perm   3908 sec   (747 perm/sec)   p_kst 5.232075e-01   p_cons 2.037671e-04   p_joint 9.352740e-04

Joint ci ratio: 7.477082e-02	ci left: 9.021529e-04	ci right 9.725596e-04	k: 2745	n:2930000
Cons ci ratio: 1.597508e-01	ci left: 1.890475e-04	ci right 2.221923e-04	k: 601	n:2930000
KS ci ratio: 2.186245e-03	ci left: 5.226136e-01	ci right 5.237577e-01	k: 1532934	n:2930000
OR8K5   2930000 perm   3930 sec   (746 perm/sec)   p_kst 5.231857e-01   p_cons 2.051195e-04   p_joint 9.368601e-04

Joint ci ratio: 7.523861e-02	ci left: 8.877364e-04	ci right 9.574703e-04	k: 2711	n:2940000
Cons ci ratio: 1.594861e-01	ci left: 1.890576e-04	ci right 2.221440e-04	k: 603	n:2940000
KS ci ratio: 2.182602e-03	ci left: 5.225966e-01	ci right 5.237388e-01	k: 1538113	n:2940000
OR8K5   2940000 perm   3952 sec   (744 perm/sec)   p_kst 5.231677e-01   p_cons 2.051020e-04   p_joint 9.221088e-04

Joint ci ratio: 7.503132e-02	ci left: 8.897163e-04	ci right 9.594049e-04	k: 2726	n:2950000
Cons ci ratio: 1.594862e-01	ci left: 1.884167e-04	ci right 2.213910e-04	k: 603	n:2950000
KS ci ratio: 2.178895e-03	ci left: 5.225987e-01	ci right 5.237389e-01	k: 1543348	n:2950000
OR8K5   2950000 perm   3974 sec   (742 perm/sec)   p_kst 5.231688e-01   p_cons 2.044068e-04   p_joint 9.240678e-04

Joint ci ratio: 7.590000e-02	ci left: 8.661594e-04	ci right 9.348230e-04	k: 2664	n:2960000
Cons ci ratio: 1.594862e-01	ci left: 1.877802e-04	ci right 2.206430e-04	k: 603	n:2960000
KS ci ratio: 2.175224e-03	ci left: 5.225967e-01	ci right 5.237350e-01	k: 1548571	n:2960000
OR8K5   2960000 perm   3996 sec   (741 perm/sec)   p_kst 5.231659e-01   p_cons 2.037162e-04   p_joint 9.000000e-04

Joint ci ratio: 7.620121e-02	ci left: 8.563067e-04	ci right 9.244705e-04	k: 2643	n:2970000
Cons ci ratio: 1.592228e-01	ci left: 1.877945e-04	ci right 2.206004e-04	k: 605	n:2970000
KS ci ratio: 2.171554e-03	ci left: 5.225988e-01	ci right 5.237352e-01	k: 1553806	n:2970000
OR8K5   2970000 perm   4018 sec   (739 perm/sec)   p_kst 5.231670e-01   p_cons 2.037037e-04   p_joint 8.898990e-04

Joint ci ratio: 7.610056e-02	ci left: 8.557374e-04	ci right 9.237620e-04	k: 2650	n:2980000
Cons ci ratio: 1.590917e-01	ci left: 1.874865e-04	ci right 2.202090e-04	k: 606	n:2980000
KS ci ratio: 2.168002e-03	ci left: 5.225780e-01	ci right 5.237125e-01	k: 1558973	n:2980000
OR8K5   2980000 perm   4040 sec   (738 perm/sec)   p_kst 5.231453e-01   p_cons 2.033557e-04   p_joint 8.892617e-04

Joint ci ratio: 7.591460e-02	ci left: 8.571406e-04	ci right 9.251029e-04	k: 2663	n:2990000
Cons ci ratio: 1.588302e-01	ci left: 1.875018e-04	ci right 2.201680e-04	k: 608	n:2990000
KS ci ratio: 2.164401e-03	ci left: 5.225725e-01	ci right 5.237051e-01	k: 1564185	n:2990000
OR8K5   2990000 perm   4062 sec   (736 perm/sec)   p_kst 5.231388e-01   p_cons 2.033445e-04   p_joint 8.906355e-04

Joint ci ratio: 7.581509e-02	ci left: 8.565726e-04	ci right 9.243968e-04	k: 2670	n:3000000
Cons ci ratio: 1.587000e-01	ci left: 1.871968e-04	ci right 2.197807e-04	k: 609	n:3000000
KS ci ratio: 2.160777e-03	ci left: 5.225766e-01	ci right 5.237073e-01	k: 1569426	n:3000000
OR8K5   3000000 perm   4084 sec   (735 perm/sec)   p_kst 5.231420e-01   p_cons 2.030000e-04   p_joint 8.900000e-04

Joint ci ratio: 7.614404e-02	ci left: 8.462306e-04	ci right 9.135396e-04	k: 2647	n:3010000
Cons ci ratio: 1.584405e-01	ci left: 1.872130e-04	ci right 2.197413e-04	k: 611	n:3010000
KS ci ratio: 2.157119e-03	ci left: 5.225927e-01	ci right 5.237215e-01	k: 1574703	n:3010000
OR8K5   3010000 perm   4106 sec   (733 perm/sec)   p_kst 5.231571e-01   p_cons 2.029900e-04   p_joint 8.794020e-04

Joint ci ratio: 7.623064e-02	ci left: 8.414795e-04	ci right 9.084901e-04	k: 2641	n:3020000
Cons ci ratio: 1.581822e-01	ci left: 1.872291e-04	ci right 2.197022e-04	k: 613	n:3020000
KS ci ratio: 2.153490e-03	ci left: 5.226064e-01	ci right 5.237333e-01	k: 1579973	n:3020000
OR8K5   3020000 perm   4129 sec   (731 perm/sec)   p_kst 5.231699e-01   p_cons 2.029801e-04   p_joint 8.745033e-04

Joint ci ratio: 7.610112e-02	ci left: 8.416161e-04	ci right 9.085186e-04	k: 2650	n:3030000
Cons ci ratio: 1.579252e-01	ci left: 1.872452e-04	ci right 2.196632e-04	k: 615	n:3030000
KS ci ratio: 2.149805e-03	ci left: 5.226371e-01	ci right 5.237622e-01	k: 1585295	n:3030000
OR8K5   3030000 perm   4151 sec   (730 perm/sec)   p_kst 5.231997e-01   p_cons 2.029703e-04   p_joint 8.745875e-04

Joint ci ratio: 7.592942e-02	ci left: 8.427200e-04	ci right 9.095524e-04	k: 2662	n:3040000
Cons ci ratio: 1.576695e-01	ci left: 1.872611e-04	ci right 2.196245e-04	k: 617	n:3040000
KS ci ratio: 2.146208e-03	ci left: 5.226515e-01	ci right 5.237748e-01	k: 1590568	n:3040000
OR8K5   3040000 perm   4173 sec   (728 perm/sec)   p_kst 5.232132e-01   p_cons 2.029605e-04   p_joint 8.756579e-04

Joint ci ratio: 7.581564e-02	ci left: 8.425302e-04	ci right 9.092430e-04	k: 2670	n:3050000
Cons ci ratio: 1.575421e-01	ci left: 1.869621e-04	ci right 2.192452e-04	k: 618	n:3050000
KS ci ratio: 2.142693e-03	ci left: 5.226511e-01	ci right 5.237725e-01	k: 1595796	n:3050000
OR8K5   3050000 perm   4196 sec   (727 perm/sec)   p_kst 5.232118e-01   p_cons 2.026230e-04   p_joint 8.754098e-04

Joint ci ratio: 7.573066e-02	ci left: 8.417004e-04	ci right 9.082696e-04	k: 2676	n:3060000
Cons ci ratio: 1.574150e-01	ci left: 1.866650e-04	ci right 2.188684e-04	k: 619	n:3060000
KS ci ratio: 2.139112e-03	ci left: 5.226699e-01	ci right 5.237895e-01	k: 1601083	n:3060000
OR8K5   3060000 perm   4218 sec   (725 perm/sec)   p_kst 5.232297e-01   p_cons 2.022876e-04   p_joint 8.745098e-04

Joint ci ratio: 7.584428e-02	ci left: 8.364021e-04	ci right 9.026559e-04	k: 2668	n:3070000
Cons ci ratio: 1.572882e-01	ci left: 1.863699e-04	ci right 2.184940e-04	k: 620	n:3070000
KS ci ratio: 2.135668e-03	ci left: 5.226610e-01	ci right 5.237787e-01	k: 1606285	n:3070000
OR8K5   3070000 perm   4241 sec   (724 perm/sec)   p_kst 5.232199e-01   p_cons 2.019544e-04   p_joint 8.690554e-04

Joint ci ratio: 7.573088e-02	ci left: 8.362347e-04	ci right 9.023718e-04	k: 2676	n:3080000
Cons ci ratio: 1.567841e-01	ci left: 1.870125e-04	ci right 2.191343e-04	k: 624	n:3080000
KS ci ratio: 2.132123e-03	ci left: 5.226794e-01	ci right 5.237953e-01	k: 1611571	n:3080000
OR8K5   3080000 perm   4265 sec   (722 perm/sec)   p_kst 5.232373e-01   p_cons 2.025974e-04   p_joint 8.688312e-04

Joint ci ratio: 7.583028e-02	ci left: 8.313059e-04	ci right 8.971433e-04	k: 2669	n:3090000
Cons ci ratio: 1.565338e-01	ci left: 1.870291e-04	ci right 2.190977e-04	k: 626	n:3090000
KS ci ratio: 2.128616e-03	ci left: 5.226931e-01	ci right 5.238072e-01	k: 1616843	n:3090000
OR8K5   3090000 perm   4288 sec   (721 perm/sec)   p_kst 5.232502e-01   p_cons 2.025890e-04   p_joint 8.637540e-04

Joint ci ratio: 7.571694e-02	ci left: 8.311561e-04	ci right 8.968788e-04	k: 2677	n:3100000
Cons ci ratio: 1.560368e-01	ci left: 1.876657e-04	ci right 2.197317e-04	k: 630	n:3100000
KS ci ratio: 2.125176e-03	ci left: 5.226948e-01	ci right 5.238071e-01	k: 1622078	n:3100000
OR8K5   3100000 perm   4312 sec   (719 perm/sec)   p_kst 5.232510e-01   p_cons 2.032258e-04   p_joint 8.635484e-04

Joint ci ratio: 7.549167e-02	ci left: 8.335310e-04	ci right 8.992369e-04	k: 2693	n:3110000
Cons ci ratio: 1.553001e-01	ci left: 1.889164e-04	ci right 2.210295e-04	k: 636	n:3110000
KS ci ratio: 2.121793e-03	ci left: 5.226872e-01	ci right 5.237977e-01	k: 1627284	n:3110000
OR8K5   3110000 perm   4335 sec   (717 perm/sec)   p_kst 5.232424e-01   p_cons 2.045016e-04   p_joint 8.659164e-04

Joint ci ratio: 7.543574e-02	ci left: 8.321173e-04	ci right 8.976610e-04	k: 2697	n:3120000
Cons ci ratio: 1.553002e-01	ci left: 1.883109e-04	ci right 2.203211e-04	k: 636	n:3120000
KS ci ratio: 2.118381e-03	ci left: 5.226902e-01	ci right 5.237989e-01	k: 1632523	n:3120000
OR8K5   3120000 perm   4358 sec   (716 perm/sec)   p_kst 5.232446e-01   p_cons 2.038462e-04   p_joint 8.644231e-04

Joint ci ratio: 7.525460e-02	ci left: 8.335339e-04	ci right 8.990246e-04	k: 2710	n:3130000
Cons ci ratio: 1.550569e-01	ci left: 1.883234e-04	ci right 2.202810e-04	k: 638	n:3130000
KS ci ratio: 2.115018e-03	ci left: 5.226855e-01	ci right 5.237924e-01	k: 1637738	n:3130000
OR8K5   3130000 perm   4381 sec   (714 perm/sec)   p_kst 5.232390e-01   p_cons 2.038339e-04   p_joint 8.658147e-04

Joint ci ratio: 7.517150e-02	ci left: 8.327542e-04	ci right 8.981082e-04	k: 2716	n:3140000
Cons ci ratio: 1.548149e-01	ci left: 1.883359e-04	ci right 2.202411e-04	k: 640	n:3140000
KS ci ratio: 2.111691e-03	ci left: 5.226760e-01	ci right 5.237812e-01	k: 1642938	n:3140000
OR8K5   3140000 perm   4404 sec   (713 perm/sec)   p_kst 5.232287e-01   p_cons 2.038217e-04   p_joint 8.649682e-04

Joint ci ratio: 7.504730e-02	ci left: 8.329140e-04	ci right 8.981679e-04	k: 2725	n:3150000
Cons ci ratio: 1.546943e-01	ci left: 1.880432e-04	ci right 2.198716e-04	k: 641	n:3150000
KS ci ratio: 2.108441e-03	ci left: 5.226521e-01	ci right 5.237555e-01	k: 1648092	n:3150000
OR8K5   3150000 perm   4427 sec   (711 perm/sec)   p_kst 5.232038e-01   p_cons 2.034921e-04   p_joint 8.650794e-04

Joint ci ratio: 7.496488e-02	ci left: 8.321413e-04	ci right 8.972600e-04	k: 2731	n:3160000
Cons ci ratio: 1.545740e-01	ci left: 1.877523e-04	ci right 2.195045e-04	k: 642	n:3160000
KS ci ratio: 2.105023e-03	ci left: 5.226719e-01	ci right 5.237736e-01	k: 1653384	n:3160000
OR8K5   3160000 perm   4451 sec   (710 perm/sec)   p_kst 5.232228e-01   p_cons 2.031646e-04   p_joint 8.642405e-04

Joint ci ratio: 7.486904e-02	ci left: 8.316831e-04	ci right 8.966790e-04	k: 2738	n:3170000
Cons ci ratio: 1.545740e-01	ci left: 1.871600e-04	ci right 2.188121e-04	k: 642	n:3170000
KS ci ratio: 2.101793e-03	ci left: 5.226506e-01	ci right 5.237506e-01	k: 1658546	n:3170000
OR8K5   3170000 perm   4477 sec   (708 perm/sec)   p_kst 5.232006e-01   p_cons 2.025237e-04   p_joint 8.637224e-04

Joint ci ratio: 7.473273e-02	ci left: 8.321536e-04	ci right 8.970628e-04	k: 2748	n:3180000
Cons ci ratio: 1.544540e-01	ci left: 1.868738e-04	ci right 2.184506e-04	k: 643	n:3180000
KS ci ratio: 2.098519e-03	ci left: 5.226436e-01	ci right 5.237419e-01	k: 1663753	n:3180000
OR8K5   3180000 perm   4502 sec   (706 perm/sec)   p_kst 5.231928e-01   p_cons 2.022013e-04   p_joint 8.641509e-04

Joint ci ratio: 7.452959e-02	ci left: 8.341594e-04	ci right 8.990405e-04	k: 2763	n:3190000
Cons ci ratio: 1.539765e-01	ci left: 1.874935e-04	ci right 2.190681e-04	k: 647	n:3190000
KS ci ratio: 2.095218e-03	ci left: 5.226467e-01	ci right 5.237432e-01	k: 1668992	n:3190000
OR8K5   3190000 perm   4526 sec   (705 perm/sec)   p_kst 5.231950e-01   p_cons 2.028213e-04   p_joint 8.661442e-04

Joint ci ratio: 7.517211e-02	ci left: 8.171398e-04	ci right 8.812690e-04	k: 2716	n:3200000
Cons ci ratio: 1.535034e-01	ci left: 1.881095e-04	ci right 2.196815e-04	k: 651	n:3200000
KS ci ratio: 2.092015e-03	ci left: 5.226301e-01	ci right 5.237249e-01	k: 1674168	n:3200000
OR8K5   3200000 perm   4550 sec   (703 perm/sec)   p_kst 5.231775e-01   p_cons 2.034375e-04   p_joint 8.487500e-04

Joint ci ratio: 7.503413e-02	ci left: 8.176510e-04	ci right 8.816974e-04	k: 2726	n:3210000
Cons ci ratio: 1.532685e-01	ci left: 1.881226e-04	ci right 2.196441e-04	k: 653	n:3210000
KS ci ratio: 2.088785e-03	ci left: 5.226235e-01	ci right 5.237166e-01	k: 1679376	n:3210000
OR8K5   3210000 perm   4573 sec   (702 perm/sec)   p_kst 5.231701e-01   p_cons 2.034268e-04   p_joint 8.492212e-04

Joint ci ratio: 7.583160e-02	ci left: 7.977434e-04	ci right 8.609238e-04	k: 2669	n:3220000
Cons ci ratio: 1.529181e-01	ci left: 1.884344e-04	ci right 2.199293e-04	k: 656	n:3220000
KS ci ratio: 2.085459e-03	ci left: 5.226434e-01	ci right 5.237348e-01	k: 1684669	n:3220000
OR8K5   3220000 perm   4597 sec   (700 perm/sec)   p_kst 5.231891e-01   p_cons 2.037267e-04   p_joint 8.288820e-04

Joint ci ratio: 7.574657e-02	ci left: 7.970960e-04	ci right 8.601512e-04	k: 2675	n:3230000
Cons ci ratio: 1.526859e-01	ci left: 1.884465e-04	ci right 2.198913e-04	k: 658	n:3230000
KS ci ratio: 2.082277e-03	ci left: 5.226325e-01	ci right 5.237222e-01	k: 1689863	n:3230000
OR8K5   3230000 perm   4621 sec   (699 perm/sec)   p_kst 5.231774e-01   p_cons 2.037152e-04   p_joint 8.281734e-04

Joint ci ratio: 7.561950e-02	ci left: 7.973610e-04	ci right 8.603268e-04	k: 2684	n:3240000
Cons ci ratio: 1.522246e-01	ci left: 1.890524e-04	ci right 2.204942e-04	k: 662	n:3240000
KS ci ratio: 2.079055e-03	ci left: 5.226350e-01	ci right 5.237230e-01	k: 1695100	n:3240000
OR8K5   3240000 perm   4646 sec   (697 perm/sec)   p_kst 5.231790e-01   p_cons 2.043210e-04   p_joint 8.283951e-04

Joint ci ratio: 7.554923e-02	ci left: 7.964170e-04	ci right 8.592472e-04	k: 2689	n:3250000
Cons ci ratio: 1.519955e-01	ci left: 1.890626e-04	ci right 2.204546e-04	k: 664	n:3250000
KS ci ratio: 2.075887e-03	ci left: 5.226279e-01	ci right 5.237142e-01	k: 1700306	n:3250000
OR8K5   3250000 perm   4670 sec   (696 perm/sec)   p_kst 5.231711e-01   p_cons 2.043077e-04   p_joint 8.273846e-04

Joint ci ratio: 7.539520e-02	ci left: 7.972845e-04	ci right 8.600493e-04	k: 2700	n:3260000
Cons ci ratio: 1.518814e-01	ci left: 1.887778e-04	ci right 2.200967e-04	k: 665	n:3260000
KS ci ratio: 2.072667e-03	ci left: 5.226368e-01	ci right 5.237215e-01	k: 1705564	n:3260000
OR8K5   3260000 perm   4694 sec   (694 perm/sec)   p_kst 5.231791e-01   p_cons 2.039877e-04   p_joint 8.282209e-04

Joint ci ratio: 7.522823e-02	ci left: 7.984470e-04	ci right 8.611580e-04	k: 2712	n:3270000
Cons ci ratio: 1.514273e-01	ci left: 1.893773e-04	ci right 2.206933e-04	k: 669	n:3270000
KS ci ratio: 2.069438e-03	ci left: 5.226514e-01	ci right 5.237344e-01	k: 1710841	n:3270000
OR8K5   3270000 perm   4719 sec   (693 perm/sec)   p_kst 5.231930e-01   p_cons 2.045872e-04   p_joint 8.293578e-04

Joint ci ratio: 7.510376e-02	ci left: 7.987050e-04	ci right 8.613280e-04	k: 2721	n:3280000
Cons ci ratio: 1.510894e-01	ci left: 1.896800e-04	ci right 2.209697e-04	k: 672	n:3280000
KS ci ratio: 2.066420e-03	ci left: 5.226188e-01	ci right 5.237001e-01	k: 1715963	n:3280000
OR8K5   3280000 perm   4743 sec   (691 perm/sec)   p_kst 5.231595e-01   p_cons 2.048780e-04   p_joint 8.295732e-04

Joint ci ratio: 7.573298e-02	ci left: 7.828572e-04	ci right 8.447745e-04	k: 2676	n:3290000
Cons ci ratio: 1.508654e-01	ci left: 1.896884e-04	ci right 2.209289e-04	k: 674	n:3290000
KS ci ratio: 2.063257e-03	ci left: 5.226243e-01	ci right 5.237040e-01	k: 1721210	n:3290000
OR8K5   3290000 perm   4768 sec   (690 perm/sec)   p_kst 5.231641e-01   p_cons 2.048632e-04   p_joint 8.133739e-04

Joint ci ratio: 8.116362e-02	ci left: 6.776892e-04	ci right 7.353139e-04	k: 2330	n:3300000
Cons ci ratio: 1.605549e-01	ci left: 1.661058e-04	ci right 1.953891e-04	k: 595	n:3300000
KS ci ratio: 2.060153e-03	ci left: 5.226191e-01	ci right 5.236972e-01	k: 1726422	n:3300000
OR8K5   3300000 perm   4793 sec   (689 perm/sec)   p_kst 5.231582e-01   p_cons 1.803030e-04   p_joint 7.060606e-04

Joint ci ratio: 8.206707e-02	ci left: 6.605482e-04	ci right 7.173705e-04	k: 2279	n:3310000
Cons ci ratio: 1.598856e-01	ci left: 1.670540e-04	ci right 1.963699e-04	k: 600	n:3310000
KS ci ratio: 2.057102e-03	ci left: 5.226047e-01	ci right 5.236811e-01	k: 1731603	n:3310000
OR8K5   3310000 perm   4817 sec   (687 perm/sec)   p_kst 5.231429e-01   p_cons 1.812689e-04   p_joint 6.885196e-04

Joint ci ratio: 8.197726e-02	ci left: 6.600337e-04	ci right 7.167466e-04	k: 2284	n:3320000
Cons ci ratio: 1.597528e-01	ci left: 1.668400e-04	ci right 1.960916e-04	k: 601	n:3320000
KS ci ratio: 2.053897e-03	ci left: 5.226309e-01	ci right 5.237058e-01	k: 1736919	n:3320000
OR8K5   3320000 perm   4841 sec   (686 perm/sec)   p_kst 5.231684e-01   p_cons 1.810241e-04   p_joint 6.879518e-04

Joint ci ratio: 8.212133e-02	ci left: 6.556985e-04	ci right 7.121426e-04	k: 2276	n:3330000
Cons ci ratio: 1.596203e-01	ci left: 1.666273e-04	ci right 1.958151e-04	k: 602	n:3330000
KS ci ratio: 2.050784e-03	ci left: 5.226382e-01	ci right 5.237114e-01	k: 1742172	n:3330000
OR8K5   3330000 perm   4866 sec   (684 perm/sec)   p_kst 5.231748e-01   p_cons 1.807808e-04   p_joint 6.834835e-04

Joint ci ratio: 8.335778e-02	ci left: 6.340901e-04	ci right 6.895360e-04	k: 2209	n:3340000
Cons ci ratio: 1.593562e-01	ci left: 1.667033e-04	ci right 1.958515e-04	k: 604	n:3340000
KS ci ratio: 2.047742e-03	ci left: 5.226315e-01	ci right 5.237031e-01	k: 1747379	n:3340000
OR8K5   3340000 perm   4891 sec   (683 perm/sec)   p_kst 5.231674e-01   p_cons 1.808383e-04   p_joint 6.613772e-04

Joint ci ratio: 8.320730e-02	ci left: 6.345357e-04	ci right 6.899154e-04	k: 2217	n:3350000
Cons ci ratio: 1.593562e-01	ci left: 1.662057e-04	ci right 1.952668e-04	k: 604	n:3350000
KS ci ratio: 2.044678e-03	ci left: 5.226336e-01	ci right 5.237036e-01	k: 1752615	n:3350000
OR8K5   3350000 perm   4915 sec   (682 perm/sec)   p_kst 5.231687e-01   p_cons 1.802985e-04   p_joint 6.617910e-04

Joint ci ratio: 8.303896e-02	ci left: 6.352701e-04	ci right 6.905963e-04	k: 2226	n:3360000
Cons ci ratio: 1.589626e-01	ci left: 1.665683e-04	ci right 1.956141e-04	k: 607	n:3360000
KS ci ratio: 2.041650e-03	ci left: 5.226304e-01	ci right 5.236988e-01	k: 1757833	n:3360000
OR8K5   3360000 perm   4940 sec   (680 perm/sec)   p_kst 5.231646e-01   p_cons 1.806548e-04   p_joint 6.625000e-04

Joint ci ratio: 8.290876e-02	ci left: 6.354191e-04	ci right 6.906673e-04	k: 2233	n:3370000
Cons ci ratio: 1.587018e-01	ci left: 1.666439e-04	ci right 1.956507e-04	k: 609	n:3370000
KS ci ratio: 2.038571e-03	ci left: 5.226428e-01	ci right 5.237096e-01	k: 1763104	n:3370000
OR8K5   3370000 perm   4965 sec   (679 perm/sec)   p_kst 5.231763e-01   p_cons 1.807122e-04   p_joint 6.626113e-04

Joint ci ratio: 8.274223e-02	ci left: 6.361467e-04	ci right 6.913418e-04	k: 2242	n:3380000
Cons ci ratio: 1.584422e-01	ci left: 1.667191e-04	ci right 1.956870e-04	k: 611	n:3380000
KS ci ratio: 2.035658e-03	ci left: 5.226180e-01	ci right 5.236832e-01	k: 1768249	n:3380000
OR8K5   3380000 perm   4990 sec   (677 perm/sec)   p_kst 5.231506e-01   p_cons 1.807692e-04   p_joint 6.633136e-04

Joint ci ratio: 8.248512e-02	ci left: 6.383147e-04	ci right 6.935175e-04	k: 2256	n:3390000
Cons ci ratio: 1.576711e-01	ci left: 1.679273e-04	ci right 1.969496e-04	k: 617	n:3390000
KS ci ratio: 2.032601e-03	ci left: 5.226316e-01	ci right 5.236952e-01	k: 1773524	n:3390000
OR8K5   3390000 perm   5015 sec   (676 perm/sec)   p_kst 5.231634e-01   p_cons 1.820059e-04   p_joint 6.654867e-04

Joint ci ratio: 8.233930e-02	ci left: 6.387417e-04	ci right 6.938791e-04	k: 2264	n:3400000
Cons ci ratio: 1.574166e-01	ci left: 1.679984e-04	ci right 1.969817e-04	k: 619	n:3400000
KS ci ratio: 2.029576e-03	ci left: 5.226407e-01	ci right 5.237028e-01	k: 1778784	n:3400000
OR8K5   3400000 perm   5040 sec   (675 perm/sec)   p_kst 5.231718e-01   p_cons 1.820588e-04   p_joint 6.658824e-04

Joint ci ratio: 8.221236e-02	ci left: 6.388791e-04	ci right 6.939393e-04	k: 2271	n:3410000
Cons ci ratio: 1.571633e-01	ci left: 1.680692e-04	ci right 1.970136e-04	k: 621	n:3410000
KS ci ratio: 2.026553e-03	ci left: 5.226524e-01	ci right 5.237129e-01	k: 1784053	n:3410000
OR8K5   3410000 perm   5065 sec   (673 perm/sec)   p_kst 5.231827e-01   p_cons 1.821114e-04   p_joint 6.659824e-04

Joint ci ratio: 8.210403e-02	ci left: 6.387294e-04	ci right 6.937007e-04	k: 2277	n:3420000
Cons ci ratio: 1.571634e-01	ci left: 1.675777e-04	ci right 1.964376e-04	k: 621	n:3420000
KS ci ratio: 2.023682e-03	ci left: 5.226301e-01	ci right 5.236891e-01	k: 1789206	n:3420000
OR8K5   3420000 perm   5090 sec   (672 perm/sec)   p_kst 5.231596e-01   p_cons 1.815789e-04   p_joint 6.657895e-04

Joint ci ratio: 8.203207e-02	ci left: 6.380095e-04	ci right 6.928684e-04	k: 2281	n:3430000
Cons ci ratio: 1.569113e-01	ci left: 1.676493e-04	ci right 1.964709e-04	k: 623	n:3430000
KS ci ratio: 2.020778e-03	ci left: 5.226191e-01	ci right 5.236765e-01	k: 1794397	n:3430000
OR8K5   3430000 perm   5116 sec   (671 perm/sec)   p_kst 5.231478e-01   p_cons 1.816327e-04   p_joint 6.650146e-04

Joint ci ratio: 8.188864e-02	ci left: 6.384327e-04	ci right 6.932274e-04	k: 2289	n:3440000
Cons ci ratio: 1.569113e-01	ci left: 1.671620e-04	ci right 1.958997e-04	k: 623	n:3440000
KS ci ratio: 2.017854e-03	ci left: 5.226159e-01	ci right 5.236718e-01	k: 1799615	n:3440000
OR8K5   3440000 perm   5141 sec   (669 perm/sec)   p_kst 5.231439e-01   p_cons 1.811047e-04   p_joint 6.654070e-04

Joint ci ratio: 8.174596e-02	ci left: 6.388536e-04	ci right 6.935843e-04	k: 2297	n:3450000
Cons ci ratio: 1.566605e-01	ci left: 1.672344e-04	ci right 1.959343e-04	k: 625	n:3450000
KS ci ratio: 2.014878e-03	ci left: 5.226290e-01	ci right 5.236834e-01	k: 1804889	n:3450000
OR8K5   3450000 perm   5167 sec   (668 perm/sec)   p_kst 5.231562e-01   p_cons 1.811594e-04   p_joint 6.657971e-04

Joint ci ratio: 8.156864e-02	ci left: 6.398384e-04	ci right 6.945289e-04	k: 2307	n:3460000
Cons ci ratio: 1.565355e-01	ci left: 1.670288e-04	ci right 1.956684e-04	k: 626	n:3460000
KS ci ratio: 2.011889e-03	ci left: 5.226484e-01	ci right 5.237013e-01	k: 1810185	n:3460000
OR8K5   3460000 perm   5192 sec   (666 perm/sec)   p_kst 5.231749e-01   p_cons 1.809249e-04   p_joint 6.667630e-04

Joint ci ratio: 8.144522e-02	ci left: 6.399706e-04	ci right 6.945858e-04	k: 2314	n:3470000
Cons ci ratio: 1.562864e-01	ci left: 1.671012e-04	ci right 1.957034e-04	k: 628	n:3470000
KS ci ratio: 2.008925e-03	ci left: 5.226648e-01	ci right 5.237161e-01	k: 1815471	n:3470000
OR8K5   3470000 perm   5218 sec   (665 perm/sec)   p_kst 5.231905e-01   p_cons 1.809798e-04   p_joint 6.668588e-04

Joint ci ratio: 8.128733e-02	ci left: 6.406652e-04	ci right 6.952287e-04	k: 2323	n:3480000
Cons ci ratio: 1.561624e-01	ci left: 1.668972e-04	ci right 1.954396e-04	k: 629	n:3480000
KS ci ratio: 2.006086e-03	ci left: 5.226532e-01	ci right 5.237030e-01	k: 1820660	n:3480000
OR8K5   3480000 perm   5244 sec   (664 perm/sec)   p_kst 5.231782e-01   p_cons 1.807471e-04   p_joint 6.675287e-04

Joint ci ratio: 8.205053e-02	ci left: 6.267600e-04	ci right 6.806643e-04	k: 2280	n:3490000
Cons ci ratio: 1.557919e-01	ci left: 1.672450e-04	ci right 1.957727e-04	k: 632	n:3490000
KS ci ratio: 2.003198e-03	ci left: 5.226569e-01	ci right 5.237052e-01	k: 1825902	n:3490000
OR8K5   3490000 perm   5270 sec   (662 perm/sec)   p_kst 5.231811e-01   p_cons 1.810888e-04   p_joint 6.532951e-04

Joint ci ratio: 8.196077e-02	ci left: 6.263685e-04	ci right 6.801774e-04	k: 2285	n:3500000
Cons ci ratio: 1.554240e-01	ci left: 1.675909e-04	ci right 1.961039e-04	k: 635	n:3500000
KS ci ratio: 2.000248e-03	ci left: 5.226792e-01	ci right 5.237260e-01	k: 1831209	n:3500000
OR8K5   3500000 perm   5295 sec   (661 perm/sec)   p_kst 5.232026e-01   p_cons 1.814286e-04   p_joint 6.528571e-04

Joint ci ratio: 8.185343e-02	ci left: 6.262584e-04	ci right 6.799840e-04	k: 2291	n:3510000
Cons ci ratio: 1.554240e-01	ci left: 1.671135e-04	ci right 1.955452e-04	k: 635	n:3510000
KS ci ratio: 1.997430e-03	ci left: 5.226716e-01	ci right 5.237169e-01	k: 1836412	n:3510000
OR8K5   3510000 perm   5321 sec   (660 perm/sec)   p_kst 5.231943e-01   p_cons 1.809117e-04   p_joint 6.527066e-04

Joint ci ratio: 8.174650e-02	ci left: 6.261489e-04	ci right 6.797917e-04	k: 2297	n:3520000
Cons ci ratio: 1.551802e-01	ci left: 1.671848e-04	ci right 1.955799e-04	k: 637	n:3520000
KS ci ratio: 1.994592e-03	ci left: 5.226721e-01	ci right 5.237159e-01	k: 1841643	n:3520000
OR8K5   3520000 perm   5348 sec   (658 perm/sec)   p_kst 5.231940e-01   p_cons 1.809659e-04   p_joint 6.525568e-04

Joint ci ratio: 8.165773e-02	ci left: 6.257626e-04	ci right 6.793113e-04	k: 2302	n:3530000
Cons ci ratio: 1.549375e-01	ci left: 1.672558e-04	ci right 1.956144e-04	k: 639	n:3530000
KS ci ratio: 1.991847e-03	ci left: 5.226522e-01	ci right 5.236945e-01	k: 1846802	n:3530000
OR8K5   3530000 perm   5374 sec   (657 perm/sec)   p_kst 5.231734e-01   p_cons 1.810198e-04   p_joint 6.521246e-04

Joint ci ratio: 8.243148e-02	ci left: 6.120971e-04	ci right 6.649965e-04	k: 2259	n:3540000
Cons ci ratio: 1.548167e-01	ci left: 1.670549e-04	ci right 1.953552e-04	k: 640	n:3540000
KS ci ratio: 1.988942e-03	ci left: 5.226753e-01	ci right 5.237162e-01	k: 1852113	n:3540000
OR8K5   3540000 perm   5401 sec   (655 perm/sec)   p_kst 5.231958e-01   p_cons 1.807910e-04   p_joint 6.381356e-04

Joint ci ratio: 7.852971e-02	ci left: 6.738593e-04	ci right 7.292139e-04	k: 2489	n:3550000
Cons ci ratio: 1.544556e-01	ci left: 1.673967e-04	ci right 1.956827e-04	k: 643	n:3550000
KS ci ratio: 1.986127e-03	ci left: 5.226792e-01	ci right 5.237186e-01	k: 1857356	n:3550000
OR8K5   3550000 perm   5428 sec   (654 perm/sec)   p_kst 5.231989e-01   p_cons 1.811268e-04   p_joint 7.011268e-04

Joint ci ratio: 7.849824e-02	ci left: 6.725172e-04	ci right 7.277384e-04	k: 2491	n:3560000
Cons ci ratio: 1.543358e-01	ci left: 1.671965e-04	ci right 1.954248e-04	k: 644	n:3560000
KS ci ratio: 1.983230e-03	ci left: 5.227063e-01	ci right 5.237442e-01	k: 1862682	n:3560000
OR8K5   3560000 perm   5454 sec   (653 perm/sec)   p_kst 5.232253e-01   p_cons 1.808989e-04   p_joint 6.997191e-04

Joint ci ratio: 7.837253e-02	ci left: 6.728303e-04	ci right 7.279847e-04	k: 2499	n:3570000
Cons ci ratio: 1.538595e-01	ci left: 1.678054e-04	ci right 1.960410e-04	k: 648	n:3570000
KS ci ratio: 1.980415e-03	ci left: 5.227159e-01	ci right 5.237524e-01	k: 1867946	n:3570000
OR8K5   3570000 perm   5480 sec   (651 perm/sec)   p_kst 5.232342e-01   p_cons 1.815126e-04   p_joint 7.000000e-04

Joint ci ratio: 7.824743e-02	ci left: 6.731418e-04	ci right 7.282296e-04	k: 2507	n:3580000
Cons ci ratio: 1.536229e-01	ci left: 1.678738e-04	ci right 1.960735e-04	k: 650	n:3580000
KS ci ratio: 1.977614e-03	ci left: 5.227252e-01	ci right 5.237602e-01	k: 1873209	n:3580000
OR8K5   3580000 perm   5507 sec   (650 perm/sec)   p_kst 5.232427e-01   p_cons 1.815642e-04   p_joint 7.002793e-04

Joint ci ratio: 7.816957e-02	ci left: 6.726323e-04	ci right 7.276211e-04	k: 2512	n:3590000
Cons ci ratio: 1.533875e-01	ci left: 1.679419e-04	ci right 1.961058e-04	k: 652	n:3590000
KS ci ratio: 1.974776e-03	ci left: 5.227464e-01	ci right 5.237800e-01	k: 1878515	n:3590000
OR8K5   3590000 perm   5533 sec   (649 perm/sec)   p_kst 5.232632e-01   p_cons 1.816156e-04   p_joint 6.997214e-04

Joint ci ratio: 7.812299e-02	ci left: 6.715809e-04	ci right 7.264496e-04	k: 2515	n:3600000
Cons ci ratio: 1.533875e-01	ci left: 1.674754e-04	ci right 1.955611e-04	k: 652	n:3600000
KS ci ratio: 1.972009e-03	ci left: 5.227528e-01	ci right 5.237849e-01	k: 1883768	n:3600000
OR8K5   3600000 perm   5559 sec   (648 perm/sec)   p_kst 5.232689e-01   p_cons 1.811111e-04   p_joint 6.986111e-04

Joint ci ratio: 7.806100e-02	ci left: 6.708069e-04	ci right 7.255670e-04	k: 2519	n:3610000
Cons ci ratio: 1.530364e-01	ci left: 1.678107e-04	ci right 1.958822e-04	k: 655	n:3610000
KS ci ratio: 1.969238e-03	ci left: 5.227630e-01	ci right 5.237937e-01	k: 1889035	n:3610000
OR8K5   3610000 perm   5586 sec   (646 perm/sec)   p_kst 5.232784e-01   p_cons 1.814404e-04   p_joint 6.977839e-04

Joint ci ratio: 7.798369e-02	ci left: 6.703081e-04	ci right 7.249708e-04	k: 2524	n:3620000
Cons ci ratio: 1.529199e-01	ci left: 1.676128e-04	ci right 1.956279e-04	k: 656	n:3620000
KS ci ratio: 1.966568e-03	ci left: 5.227508e-01	ci right 5.237801e-01	k: 1894221	n:3620000
OR8K5   3620000 perm   5614 sec   (645 perm/sec)   p_kst 5.232655e-01   p_cons 1.812155e-04   p_joint 6.972376e-04

Joint ci ratio: 7.787582e-02	ci left: 6.703523e-04	ci right 7.249396e-04	k: 2531	n:3630000
Cons ci ratio: 1.528036e-01	ci left: 1.674160e-04	ci right 1.953750e-04	k: 657	n:3630000
KS ci ratio: 1.963962e-03	ci left: 5.227249e-01	ci right 5.237528e-01	k: 1899357	n:3630000
OR8K5   3630000 perm   5640 sec   (644 perm/sec)   p_kst 5.232388e-01   p_cons 1.809917e-04   p_joint 6.972452e-04

Joint ci ratio: 7.776840e-02	ci left: 6.703964e-04	ci right 7.249085e-04	k: 2538	n:3640000
Cons ci ratio: 1.525719e-01	ci left: 1.674845e-04	ci right 1.954087e-04	k: 659	n:3640000
KS ci ratio: 1.961245e-03	ci left: 5.227299e-01	ci right 5.237563e-01	k: 1904605	n:3640000
OR8K5   3640000 perm   5667 sec   (642 perm/sec)   p_kst 5.232431e-01   p_cons 1.810440e-04   p_joint 6.972527e-04

Joint ci ratio: 7.763091e-02	ci left: 6.709775e-04	ci right 7.254361e-04	k: 2547	n:3650000
Cons ci ratio: 1.521116e-01	ci left: 1.680798e-04	ci right 1.960110e-04	k: 663	n:3650000
KS ci ratio: 1.958488e-03	ci left: 5.227480e-01	ci right 5.237731e-01	k: 1909901	n:3650000
OR8K5   3650000 perm   5694 sec   (641 perm/sec)   p_kst 5.232605e-01   p_cons 1.816438e-04   p_joint 6.978082e-04

Joint ci ratio: 7.744869e-02	ci left: 6.723594e-04	ci right 7.267962e-04	k: 2559	n:3660000
Cons ci ratio: 1.517692e-01	ci left: 1.684090e-04	ci right 1.963262e-04	k: 666	n:3660000
KS ci ratio: 1.955830e-03	ci left: 5.227439e-01	ci right 5.237675e-01	k: 1915116	n:3660000
OR8K5   3660000 perm   5721 sec   (640 perm/sec)   p_kst 5.232557e-01   p_cons 1.819672e-04   p_joint 6.991803e-04

Joint ci ratio: 7.402631e-02	ci left: 7.352201e-04	ci right 7.920029e-04	k: 2801	n:3670000
Cons ci ratio: 1.514290e-01	ci left: 1.687366e-04	ci right 1.966397e-04	k: 669	n:3670000
KS ci ratio: 1.953185e-03	ci left: 5.227390e-01	ci right 5.237612e-01	k: 1920328	n:3670000
OR8K5   3670000 perm   5749 sec   (638 perm/sec)   p_kst 5.232501e-01   p_cons 1.822888e-04   p_joint 7.632153e-04

Joint ci ratio: 7.389454e-02	ci left: 7.358894e-04	ci right 7.926183e-04	k: 2811	n:3680000
Cons ci ratio: 1.508670e-01	ci left: 1.695854e-04	ci right 1.975154e-04	k: 674	n:3680000
KS ci ratio: 1.950577e-03	ci left: 5.227276e-01	ci right 5.237485e-01	k: 1925516	n:3680000
OR8K5   3680000 perm   5779 sec   (637 perm/sec)   p_kst 5.232380e-01   p_cons 1.831522e-04   p_joint 7.638587e-04

Joint ci ratio: 7.437258e-02	ci left: 7.243197e-04	ci right 7.805336e-04	k: 2775	n:3690000
Cons ci ratio: 1.508670e-01	ci left: 1.691258e-04	ci right 1.969801e-04	k: 674	n:3690000
KS ci ratio: 1.948011e-03	ci left: 5.227081e-01	ci right 5.237276e-01	k: 1930674	n:3690000
OR8K5   3690000 perm   5806 sec   (636 perm/sec)   p_kst 5.232179e-01   p_cons 1.826558e-04   p_joint 7.520325e-04

Joint ci ratio: 7.427899e-02	ci left: 7.242188e-04	ci right 7.803511e-04	k: 2782	n:3700000
Cons ci ratio: 1.507554e-01	ci left: 1.689288e-04	ci right 1.967282e-04	k: 675	n:3700000
KS ci ratio: 1.945336e-03	ci left: 5.227193e-01	ci right 5.237374e-01	k: 1935945	n:3700000
OR8K5   3700000 perm   5834 sec   (634 perm/sec)   p_kst 5.232284e-01   p_cons 1.824324e-04   p_joint 7.518919e-04

Joint ci ratio: 7.415916e-02	ci left: 7.246476e-04	ci right 7.807186e-04	k: 2791	n:3710000
Cons ci ratio: 1.503113e-01	ci left: 1.695110e-04	ci right 1.973167e-04	k: 679	n:3710000
KS ci ratio: 1.942632e-03	ci left: 5.227407e-01	ci right 5.237574e-01	k: 1941254	n:3710000
OR8K5   3710000 perm   5861 sec   (633 perm/sec)   p_kst 5.232491e-01   p_cons 1.830189e-04   p_joint 7.522911e-04

Joint ci ratio: 7.468307e-02	ci left: 7.124106e-04	ci right 7.679411e-04	k: 2752	n:3720000
Cons ci ratio: 1.503114e-01	ci left: 1.690553e-04	ci right 1.967862e-04	k: 679	n:3720000
KS ci ratio: 1.940037e-03	ci left: 5.227367e-01	ci right 5.237520e-01	k: 1946469	n:3720000
OR8K5   3720000 perm   5888 sec   (632 perm/sec)   p_kst 5.232444e-01   p_cons 1.825269e-04   p_joint 7.397849e-04

Joint ci ratio: 7.545508e-02	ci left: 6.957689e-04	ci right 7.505874e-04	k: 2696	n:3730000
Cons ci ratio: 1.503114e-01	ci left: 1.686021e-04	ci right 1.962587e-04	k: 679	n:3730000
KS ci ratio: 1.937378e-03	ci left: 5.227520e-01	ci right 5.237660e-01	k: 1951756	n:3730000
OR8K5   3730000 perm   5915 sec   (631 perm/sec)   p_kst 5.232590e-01   p_cons 1.820375e-04   p_joint 7.227882e-04

Joint ci ratio: 7.532948e-02	ci left: 6.962696e-04	ci right 7.510322e-04	k: 2705	n:3740000
Cons ci ratio: 1.502010e-01	ci left: 1.684086e-04	ci right 1.960113e-04	k: 680	n:3740000
KS ci ratio: 1.934772e-03	ci left: 5.227562e-01	ci right 5.237689e-01	k: 1957002	n:3740000
OR8K5   3740000 perm   5943 sec   (629 perm/sec)   p_kst 5.232626e-01   p_cons 1.818182e-04   p_joint 7.232620e-04

Joint ci ratio: 7.527389e-02	ci left: 6.954594e-04	ci right 7.501163e-04	k: 2709	n:3750000
Cons ci ratio: 1.502011e-01	ci left: 1.679595e-04	ci right 1.954887e-04	k: 680	n:3750000
KS ci ratio: 1.932215e-03	ci left: 5.227506e-01	ci right 5.237619e-01	k: 1962211	n:3750000
OR8K5   3750000 perm   5971 sec   (628 perm/sec)   p_kst 5.232563e-01   p_cons 1.813333e-04   p_joint 7.224000e-04

Joint ci ratio: 7.517687e-02	ci left: 6.954365e-04	ci right 7.500180e-04	k: 2716	n:3760000
Cons ci ratio: 1.500909e-01	ci left: 1.677688e-04	ci right 1.952447e-04	k: 681	n:3760000
KS ci ratio: 1.929640e-03	ci left: 5.227525e-01	ci right 5.237624e-01	k: 1967448	n:3760000
OR8K5   3760000 perm   5999 sec   (627 perm/sec)   p_kst 5.232574e-01   p_cons 1.811170e-04   p_joint 7.223404e-04

Joint ci ratio: 7.568035e-02	ci left: 6.842227e-04	ci right 7.382996e-04	k: 2680	n:3770000
Cons ci ratio: 1.497619e-01	ci left: 1.680897e-04	ci right 1.955524e-04	k: 684	n:3770000
KS ci ratio: 1.927078e-03	ci left: 5.227532e-01	ci right 5.237618e-01	k: 1972681	n:3770000
OR8K5   3770000 perm   6026 sec   (626 perm/sec)   p_kst 5.232576e-01   p_cons 1.814324e-04   p_joint 7.108753e-04

Joint ci ratio: 7.555362e-02	ci left: 6.847486e-04	ci right 7.387723e-04	k: 2689	n:3780000
Cons ci ratio: 1.493265e-01	ci left: 1.686636e-04	ci right 1.961328e-04	k: 688	n:3780000
KS ci ratio: 1.924597e-03	ci left: 5.227360e-01	ci right 5.237433e-01	k: 1977846	n:3780000
OR8K5   3780000 perm   6055 sec   (624 perm/sec)   p_kst 5.232397e-01   p_cons 1.820106e-04   p_joint 7.113757e-04

Joint ci ratio: 7.545551e-02	ci left: 6.847539e-04	ci right 7.387049e-04	k: 2696	n:3790000
Cons ci ratio: 1.488949e-01	ci left: 1.692346e-04	ci right 1.967101e-04	k: 692	n:3790000
KS ci ratio: 1.922015e-03	ci left: 5.227474e-01	ci right 5.237533e-01	k: 1983119	n:3790000
OR8K5   3790000 perm   6082 sec   (623 perm/sec)   p_kst 5.232504e-01   p_cons 1.825858e-04   p_joint 7.113456e-04

Joint ci ratio: 7.531598e-02	ci left: 6.855339e-04	ci right 7.394421e-04	k: 2706	n:3800000
Cons ci ratio: 1.487876e-01	ci left: 1.690426e-04	ci right 1.964653e-04	k: 693	n:3800000
KS ci ratio: 1.919496e-03	ci left: 5.227450e-01	ci right 5.237497e-01	k: 1988340	n:3800000
OR8K5   3800000 perm   6111 sec   (622 perm/sec)   p_kst 5.232474e-01   p_cons 1.823684e-04   p_joint 7.121053e-04

Joint ci ratio: 7.551171e-02	ci left: 6.801293e-04	ci right 7.337576e-04	k: 2692	n:3810000
Cons ci ratio: 1.484670e-01	ci left: 1.693571e-04	ci right 1.967664e-04	k: 696	n:3810000
KS ci ratio: 1.916892e-03	ci left: 5.227674e-01	ci right 5.237707e-01	k: 1993655	n:3810000
OR8K5   3810000 perm   6139 sec   (621 perm/sec)   p_kst 5.232690e-01   p_cons 1.826772e-04   p_joint 7.065617e-04

Joint ci ratio: 7.541376e-02	ci left: 6.801467e-04	ci right 7.337038e-04	k: 2699	n:3820000
Cons ci ratio: 1.482544e-01	ci left: 1.694178e-04	ci right 1.967942e-04	k: 698	n:3820000
KS ci ratio: 1.914372e-03	ci left: 5.227705e-01	ci right 5.237724e-01	k: 1998897	n:3820000
OR8K5   3820000 perm   6166 sec   (619 perm/sec)   p_kst 5.232715e-01   p_cons 1.827225e-04   p_joint 7.065445e-04

Joint ci ratio: 7.537194e-02	ci left: 6.791394e-04	ci right 7.325862e-04	k: 2702	n:3830000
Cons ci ratio: 1.480428e-01	ci left: 1.694783e-04	ci right 1.968219e-04	k: 700	n:3830000
KS ci ratio: 1.911931e-03	ci left: 5.227555e-01	ci right 5.237562e-01	k: 2004070	n:3830000
OR8K5   3830000 perm   6194 sec   (618 perm/sec)   p_kst 5.232559e-01   p_cons 1.827676e-04   p_joint 7.054830e-04

Joint ci ratio: 7.528843e-02	ci left: 6.789039e-04	ci right 7.322703e-04	k: 2708	n:3840000
Cons ci ratio: 1.478320e-01	ci left: 1.695385e-04	ci right 1.968495e-04	k: 702	n:3840000
KS ci ratio: 1.909512e-03	ci left: 5.227373e-01	ci right 5.237366e-01	k: 2009230	n:3840000
OR8K5   3840000 perm   6222 sec   (617 perm/sec)   p_kst 5.232370e-01   p_cons 1.828125e-04   p_joint 7.052083e-04

Joint ci ratio: 7.514983e-02	ci left: 6.796891e-04	ci right 7.330146e-04	k: 2718	n:3850000
Cons ci ratio: 1.475176e-01	ci left: 1.698486e-04	ci right 1.971462e-04	k: 705	n:3850000
KS ci ratio: 1.907034e-03	ci left: 5.227371e-01	ci right 5.237351e-01	k: 2014459	n:3850000
OR8K5   3850000 perm   6251 sec   (616 perm/sec)   p_kst 5.232361e-01   p_cons 1.831169e-04   p_joint 7.059740e-04

Joint ci ratio: 7.509464e-02	ci left: 6.789450e-04	ci right 7.321713e-04	k: 2722	n:3860000
Cons ci ratio: 1.475176e-01	ci left: 1.694086e-04	ci right 1.966354e-04	k: 705	n:3860000
KS ci ratio: 1.904488e-03	ci left: 5.227570e-01	ci right 5.237538e-01	k: 2019766	n:3860000
OR8K5   3860000 perm   6279 sec   (615 perm/sec)   p_kst 5.232554e-01   p_cons 1.826425e-04   p_joint 7.051813e-04

Joint ci ratio: 7.499831e-02	ci left: 6.789655e-04	ci right 7.321221e-04	k: 2729	n:3870000
Cons ci ratio: 1.473091e-01	ci left: 1.694686e-04	ci right 1.966632e-04	k: 707	n:3870000
KS ci ratio: 1.902041e-03	ci left: 5.227537e-01	ci right 5.237491e-01	k: 2024983	n:3870000
OR8K5   3870000 perm   6308 sec   (614 perm/sec)   p_kst 5.232514e-01   p_cons 1.826873e-04   p_joint 7.051680e-04

Joint ci ratio: 7.530262e-02	ci left: 6.716519e-04	ci right 7.244587e-04	k: 2707	n:3880000
Cons ci ratio: 1.471015e-01	ci left: 1.695283e-04	ci right 1.966908e-04	k: 709	n:3880000
KS ci ratio: 1.899574e-03	ci left: 5.227580e-01	ci right 5.237522e-01	k: 2030230	n:3880000
OR8K5   3880000 perm   6336 sec   (612 perm/sec)   p_kst 5.232552e-01   p_cons 1.827320e-04   p_joint 6.976804e-04

Joint ci ratio: 7.520548e-02	ci left: 6.716909e-04	ci right 7.244297e-04	k: 2714	n:3890000
Cons ci ratio: 1.469980e-01	ci left: 1.693401e-04	ci right 1.964516e-04	k: 710	n:3890000
KS ci ratio: 1.897083e-03	ci left: 5.227714e-01	ci right 5.237643e-01	k: 2035512	n:3890000
OR8K5   3890000 perm   6365 sec   (611 perm/sec)   p_kst 5.232679e-01   p_cons 1.825193e-04   p_joint 6.976864e-04

Joint ci ratio: 7.509491e-02	ci left: 6.719814e-04	ci right 7.246620e-04	k: 2722	n:3900000
Cons ci ratio: 1.467917e-01	ci left: 1.693998e-04	ci right 1.964796e-04	k: 712	n:3900000
KS ci ratio: 1.894648e-03	ci left: 5.227724e-01	ci right 5.237640e-01	k: 2040746	n:3900000
OR8K5   3900000 perm   6393 sec   (610 perm/sec)   p_kst 5.232682e-01   p_cons 1.825641e-04   p_joint 6.979487e-04

Joint ci ratio: 7.501233e-02	ci left: 6.717685e-04	ci right 7.243719e-04	k: 2728	n:3910000
Cons ci ratio: 1.466889e-01	ci left: 1.692130e-04	ci right 1.962422e-04	k: 713	n:3910000
KS ci ratio: 1.892263e-03	ci left: 5.227626e-01	ci right 5.237530e-01	k: 2045938	n:3910000
OR8K5   3910000 perm   6424 sec   (609 perm/sec)   p_kst 5.232578e-01   p_cons 1.823529e-04   p_joint 6.976982e-04

Joint ci ratio: 7.570964e-02	ci left: 6.575398e-04	ci right 7.095288e-04	k: 2678	n:3920000
Cons ci ratio: 1.464839e-01	ci left: 1.692728e-04	ci right 1.962705e-04	k: 715	n:3920000
KS ci ratio: 1.889870e-03	ci left: 5.227575e-01	ci right 5.237466e-01	k: 2051148	n:3920000
OR8K5   3920000 perm   6453 sec   (607 perm/sec)   p_kst 5.232520e-01   p_cons 1.823980e-04   p_joint 6.831633e-04

Joint ci ratio: 7.558277e-02	ci left: 6.581135e-04	ci right 7.100568e-04	k: 2687	n:3930000
Cons ci ratio: 1.461779e-01	ci left: 1.695775e-04	ci right 1.965624e-04	k: 718	n:3930000
KS ci ratio: 1.887444e-03	ci left: 5.227633e-01	ci right 5.237512e-01	k: 2056401	n:3930000
OR8K5   3930000 perm   6483 sec   (606 perm/sec)   p_kst 5.232573e-01   p_cons 1.826972e-04   p_joint 6.837150e-04

Joint ci ratio: 7.547054e-02	ci left: 6.584353e-04	ci right 7.103234e-04	k: 2695	n:3940000
Cons ci ratio: 1.459751e-01	ci left: 1.696361e-04	ci right 1.965896e-04	k: 720	n:3940000
KS ci ratio: 1.885056e-03	ci left: 5.227615e-01	ci right 5.237481e-01	k: 2061624	n:3940000
OR8K5   3940000 perm   6512 sec   (605 perm/sec)   p_kst 5.232548e-01   p_cons 1.827411e-04   p_joint 6.840102e-04

Joint ci ratio: 7.534486e-02	ci left: 6.590039e-04	ci right 7.108465e-04	k: 2704	n:3950000
Cons ci ratio: 1.458739e-01	ci left: 1.694506e-04	ci right 1.963543e-04	k: 721	n:3950000
KS ci ratio: 1.882684e-03	ci left: 5.227579e-01	ci right 5.237433e-01	k: 2066840	n:3950000
OR8K5   3950000 perm   6541 sec   (604 perm/sec)   p_kst 5.232506e-01   p_cons 1.825316e-04   p_joint 6.845570e-04

Joint ci ratio: 7.530315e-02	ci left: 6.580830e-04	ci right 7.098233e-04	k: 2707	n:3960000
Cons ci ratio: 1.457730e-01	ci left: 1.692660e-04	ci right 1.961202e-04	k: 722	n:3960000
KS ci ratio: 1.880306e-03	ci left: 5.227584e-01	ci right 5.237425e-01	k: 2072072	n:3960000
OR8K5   3960000 perm   6570 sec   (603 perm/sec)   p_kst 5.232505e-01   p_cons 1.823232e-04   p_joint 6.835859e-04

Joint ci ratio: 7.513681e-02	ci left: 6.593912e-04	ci right 7.111149e-04	k: 2719	n:3970000
Cons ci ratio: 1.454715e-01	ci left: 1.695678e-04	ci right 1.964094e-04	k: 725	n:3970000
KS ci ratio: 1.877863e-03	ci left: 5.227786e-01	ci right 5.237614e-01	k: 2077382	n:3970000
OR8K5   3970000 perm   6598 sec   (602 perm/sec)   p_kst 5.232700e-01   p_cons 1.826196e-04   p_joint 6.848866e-04

Joint ci ratio: 7.497156e-02	ci left: 6.606929e-04	ci right 7.123998e-04	k: 2731	n:3980000
Cons ci ratio: 1.449731e-01	ci left: 1.703524e-04	ci right 1.972178e-04	k: 730	n:3980000
KS ci ratio: 1.875569e-03	ci left: 5.227614e-01	ci right 5.237431e-01	k: 2082544	n:3980000
OR8K5   3980000 perm   6627 sec   (601 perm/sec)   p_kst 5.232523e-01   p_cons 1.834171e-04   p_joint 6.861809e-04

Joint ci ratio: 7.487570e-02	ci left: 6.607586e-04	ci right 7.124016e-04	k: 2738	n:3990000
Cons ci ratio: 1.447752e-01	ci left: 1.704085e-04	ci right 1.972429e-04	k: 732	n:3990000
KS ci ratio: 1.873212e-03	ci left: 5.227634e-01	ci right 5.237438e-01	k: 2087782	n:3990000
OR8K5   3990000 perm   6656 sec   (599 perm/sec)   p_kst 5.232536e-01   p_cons 1.834586e-04   p_joint 6.862155e-04

Joint ci ratio: 7.580933e-02	ci left: 6.426720e-04	ci right 6.935553e-04	k: 2671	n:4000000
Cons ci ratio: 1.443817e-01	ci left: 1.709463e-04	ci right 1.977860e-04	k: 736	n:4000000
KS ci ratio: 1.870852e-03	ci left: 5.227686e-01	ci right 5.237478e-01	k: 2093033	n:4000000
OR8K5   4000000 perm   6685 sec   (598 perm/sec)   p_kst 5.232583e-01   p_cons 1.840000e-04   p_joint 6.677500e-04

Joint ci ratio: 7.572437e-02	ci left: 6.425373e-04	ci right 6.933504e-04	k: 2677	n:4010000
Cons ci ratio: 1.442839e-01	ci left: 1.707604e-04	ci right 1.975511e-04	k: 737	n:4010000
KS ci ratio: 1.868486e-03	ci left: 5.227778e-01	ci right 5.237558e-01	k: 2098300	n:4010000
OR8K5   4010000 perm   6715 sec   (597 perm/sec)   p_kst 5.232668e-01   p_cons 1.837905e-04   p_joint 6.675810e-04

Joint ci ratio: 7.566790e-02	ci left: 6.419151e-04	ci right 6.926395e-04	k: 2681	n:4020000
Cons ci ratio: 1.440888e-01	ci left: 1.708152e-04	ci right 1.975751e-04	k: 739	n:4020000
KS ci ratio: 1.866149e-03	ci left: 5.227815e-01	ci right 5.237582e-01	k: 2103545	n:4020000
OR8K5   4020000 perm   6744 sec   (596 perm/sec)   p_kst 5.232699e-01   p_cons 1.838308e-04   p_joint 6.669154e-04

Joint ci ratio: 7.559749e-02	ci left: 6.415395e-04	ci right 6.921849e-04	k: 2686	n:4030000
Cons ci ratio: 1.440888e-01	ci left: 1.703913e-04	ci right 1.970849e-04	k: 739	n:4030000
KS ci ratio: 1.863808e-03	ci left: 5.227887e-01	ci right 5.237642e-01	k: 2108804	n:4030000
OR8K5   4030000 perm   6774 sec   (595 perm/sec)   p_kst 5.232764e-01   p_cons 1.833747e-04   p_joint 6.665012e-04

Joint ci ratio: 7.596622e-02	ci left: 6.336377e-04	ci right 6.839141e-04	k: 2660	n:4040000
Cons ci ratio: 1.437976e-01	ci left: 1.706854e-04	ci right 1.973663e-04	k: 742	n:4040000
KS ci ratio: 1.861555e-03	ci left: 5.227745e-01	ci right 5.237488e-01	k: 2113977	n:4040000
OR8K5   4040000 perm   6803 sec   (594 perm/sec)   p_kst 5.232616e-01   p_cons 1.836634e-04   p_joint 6.584158e-04

Joint ci ratio: 7.583805e-02	ci left: 6.342532e-04	ci right 6.844898e-04	k: 2669	n:4050000
Cons ci ratio: 1.434121e-01	ci left: 1.712161e-04	ci right 1.979021e-04	k: 746	n:4050000
KS ci ratio: 1.859285e-03	ci left: 5.227670e-01	ci right 5.237401e-01	k: 2119177	n:4050000
OR8K5   4050000 perm   6833 sec   (593 perm/sec)   p_kst 5.232536e-01   p_cons 1.841975e-04   p_joint 6.590123e-04

Joint ci ratio: 7.575299e-02	ci left: 6.341409e-04	ci right 6.843097e-04	k: 2675	n:4060000
Cons ci ratio: 1.433162e-01	ci left: 1.710319e-04	ci right 1.976698e-04	k: 747	n:4060000
KS ci ratio: 1.856859e-03	ci left: 5.228039e-01	ci right 5.237758e-01	k: 2124557	n:4060000
OR8K5   4060000 perm   6862 sec   (592 perm/sec)   p_kst 5.232899e-01   p_cons 1.839901e-04   p_joint 6.588670e-04

Joint ci ratio: 7.610964e-02	ci left: 6.265568e-04	ci right 6.763694e-04	k: 2650	n:4070000
Cons ci ratio: 1.431250e-01	ci left: 1.710854e-04	ci right 1.976931e-04	k: 749	n:4070000
KS ci ratio: 1.854525e-03	ci left: 5.228183e-01	ci right 5.237890e-01	k: 2129846	n:4070000
OR8K5   4070000 perm   6891 sec   (591 perm/sec)   p_kst 5.233037e-01   p_cons 1.840295e-04   p_joint 6.511057e-04

Joint ci ratio: 7.596646e-02	ci left: 6.274255e-04	ci right 6.772092e-04	k: 2660	n:4080000
Cons ci ratio: 1.426502e-01	ci left: 1.718478e-04	ci right 1.984779e-04	k: 754	n:4080000
KS ci ratio: 1.852219e-03	ci left: 5.228275e-01	ci right 5.237970e-01	k: 2135114	n:4080000
OR8K5   4080000 perm   6921 sec   (590 perm/sec)   p_kst 5.233123e-01   p_cons 1.848039e-04   p_joint 6.519608e-04

Joint ci ratio: 7.585251e-02	ci left: 6.278103e-04	ci right 6.775465e-04	k: 2668	n:4090000
Cons ci ratio: 1.423676e-01	ci left: 1.721350e-04	ci right 1.987522e-04	k: 757	n:4090000
KS ci ratio: 1.849939e-03	ci left: 5.228320e-01	ci right 5.238003e-01	k: 2140363	n:4090000
OR8K5   4090000 perm   6951 sec   (588 perm/sec)   p_kst 5.233161e-01   p_cons 1.850856e-04   p_joint 6.523227e-04

Joint ci ratio: 7.071042e-02	ci left: 7.225346e-04	ci right 7.757355e-04	k: 3070	n:4100000
Cons ci ratio: 1.419003e-01	ci left: 1.728913e-04	ci right 1.995303e-04	k: 762	n:4100000
KS ci ratio: 1.847706e-03	ci left: 5.228259e-01	ci right 5.237931e-01	k: 2145569	n:4100000
OR8K5   4100000 perm   6980 sec   (587 perm/sec)   p_kst 5.233095e-01   p_cons 1.858537e-04   p_joint 7.487805e-04

Joint ci ratio: 7.064145e-02	ci left: 7.222107e-04	ci right 7.753338e-04	k: 3076	n:4110000
Cons ci ratio: 1.418074e-01	ci left: 1.727053e-04	ci right 1.992968e-04	k: 763	n:4110000
KS ci ratio: 1.845447e-03	ci left: 5.228292e-01	ci right 5.237951e-01	k: 2150813	n:4110000
OR8K5   4110000 perm   7010 sec   (586 perm/sec)   p_kst 5.233122e-01   p_cons 1.856448e-04   p_joint 7.484185e-04

Joint ci ratio: 7.054980e-02	ci left: 7.223652e-04	ci right 7.754279e-04	k: 3084	n:4120000
Cons ci ratio: 1.418075e-01	ci left: 1.722861e-04	ci right 1.988130e-04	k: 763	n:4120000
KS ci ratio: 1.843232e-03	ci left: 5.228227e-01	ci right 5.237875e-01	k: 2156017	n:4120000
OR8K5   4120000 perm   7040 sec   (585 perm/sec)   p_kst 5.233051e-01   p_cons 1.851942e-04   p_joint 7.485437e-04

Joint ci ratio: 7.048130e-02	ci left: 7.220433e-04	ci right 7.750287e-04	k: 3090	n:4130000
Cons ci ratio: 1.416222e-01	ci left: 1.723360e-04	ci right 1.988331e-04	k: 765	n:4130000
KS ci ratio: 1.840991e-03	ci left: 5.228257e-01	ci right 5.237893e-01	k: 2161260	n:4130000
OR8K5   4130000 perm   7070 sec   (584 perm/sec)   p_kst 5.233075e-01   p_cons 1.852300e-04   p_joint 7.481840e-04

Joint ci ratio: 7.039027e-02	ci left: 7.221976e-04	ci right 7.751231e-04	k: 3098	n:4140000
Cons ci ratio: 1.414377e-01	ci left: 1.723858e-04	ci right 1.988530e-04	k: 767	n:4140000
KS ci ratio: 1.838797e-03	ci left: 5.228178e-01	ci right 5.237802e-01	k: 2166458	n:4140000
OR8K5   4140000 perm   7100 sec   (583 perm/sec)   p_kst 5.232990e-01   p_cons 1.852657e-04   p_joint 7.483092e-04

Joint ci ratio: 7.033357e-02	ci left: 7.216410e-04	ci right 7.744813e-04	k: 3103	n:4150000
Cons ci ratio: 1.413457e-01	ci left: 1.722028e-04	ci right 1.986233e-04	k: 768	n:4150000
KS ci ratio: 1.836553e-03	ci left: 5.228258e-01	ci right 5.237871e-01	k: 2171722	n:4150000
OR8K5   4150000 perm   7131 sec   (582 perm/sec)   p_kst 5.233065e-01   p_cons 1.850602e-04   p_joint 7.477108e-04

Joint ci ratio: 7.026571e-02	ci left: 7.213232e-04	ci right 7.740873e-04	k: 3109	n:4160000
Cons ci ratio: 1.412539e-01	ci left: 1.720207e-04	ci right 1.983947e-04	k: 769	n:4160000
KS ci ratio: 1.834324e-03	ci left: 5.228319e-01	ci right 5.237921e-01	k: 2176978	n:4160000
OR8K5   4160000 perm   7161 sec   (581 perm/sec)   p_kst 5.233120e-01   p_cons 1.848558e-04   p_joint 7.473558e-04

Joint ci ratio: 7.017550e-02	ci left: 7.214782e-04	ci right 7.741831e-04	k: 3117	n:4170000
Cons ci ratio: 1.408884e-01	ci left: 1.725336e-04	ci right 1.989120e-04	k: 773	n:4170000
KS ci ratio: 1.832169e-03	ci left: 5.228200e-01	ci right 5.237790e-01	k: 2182159	n:4170000
OR8K5   4170000 perm   7192 sec   (580 perm/sec)   p_kst 5.232995e-01   p_cons 1.853717e-04   p_joint 7.474820e-04

Joint ci ratio: 7.008565e-02	ci left: 7.216325e-04	ci right 7.742784e-04	k: 3125	n:4180000
Cons ci ratio: 1.407067e-01	ci left: 1.725825e-04	ci right 1.989315e-04	k: 775	n:4180000
KS ci ratio: 1.829887e-03	ci left: 5.228450e-01	ci right 5.238028e-01	k: 2187494	n:4180000
OR8K5   4180000 perm   7223 sec   (579 perm/sec)   p_kst 5.233239e-01   p_cons 1.854067e-04   p_joint 7.476077e-04

Joint ci ratio: 6.997379e-02	ci left: 7.222550e-04	ci right 7.748589e-04	k: 3135	n:4190000
Cons ci ratio: 1.403454e-01	ci left: 1.730917e-04	ci right 1.994449e-04	k: 779	n:4190000
KS ci ratio: 1.827742e-03	ci left: 5.228345e-01	ci right 5.237912e-01	k: 2192681	n:4190000
OR8K5   4190000 perm   7254 sec   (578 perm/sec)   p_kst 5.233129e-01   p_cons 1.859189e-04   p_joint 7.482100e-04

Joint ci ratio: 6.992924e-02	ci left: 7.214711e-04	ci right 7.739830e-04	k: 3139	n:4200000
Cons ci ratio: 1.401658e-01	ci left: 1.731390e-04	ci right 1.994629e-04	k: 781	n:4200000
KS ci ratio: 1.825544e-03	ci left: 5.228408e-01	ci right 5.237963e-01	k: 2197938	n:4200000
OR8K5   4200000 perm   7284 sec   (577 perm/sec)   p_kst 5.233186e-01   p_cons 1.859524e-04   p_joint 7.473810e-04

Joint ci ratio: 6.985142e-02	ci left: 7.213910e-04	ci right 7.738364e-04	k: 3146	n:4210000
Cons ci ratio: 1.401659e-01	ci left: 1.727278e-04	ci right 1.989891e-04	k: 781	n:4210000
KS ci ratio: 1.823442e-03	ci left: 5.228230e-01	ci right 5.237774e-01	k: 2203094	n:4210000
OR8K5   4210000 perm   7315 sec   (576 perm/sec)   p_kst 5.233002e-01   p_cons 1.855107e-04   p_joint 7.472684e-04

Joint ci ratio: 6.971859e-02	ci left: 7.224756e-04	ci right 7.748958e-04	k: 3158	n:4220000
Cons ci ratio: 1.399870e-01	ci left: 1.727758e-04	ci right 1.990081e-04	k: 783	n:4220000
KS ci ratio: 1.821219e-03	ci left: 5.228404e-01	ci right 5.237937e-01	k: 2208398	n:4220000
OR8K5   4220000 perm   7346 sec   (574 perm/sec)   p_kst 5.233171e-01   p_cons 1.855450e-04   p_joint 7.483412e-04

Joint ci ratio: 6.967452e-02	ci left: 7.216967e-04	ci right 7.740260e-04	k: 3162	n:4230000
Cons ci ratio: 1.398978e-01	ci left: 1.725955e-04	ci right 1.987823e-04	k: 784	n:4230000
KS ci ratio: 1.819076e-03	ci left: 5.228378e-01	ci right 5.237900e-01	k: 2213618	n:4230000
OR8K5   4230000 perm   7378 sec   (573 perm/sec)   p_kst 5.233139e-01   p_cons 1.853428e-04   p_joint 7.475177e-04

Joint ci ratio: 6.961954e-02	ci left: 7.211533e-04	ci right 7.734003e-04	k: 3167	n:4240000
Cons ci ratio: 1.397199e-01	ci left: 1.726436e-04	ci right 1.988017e-04	k: 786	n:4240000
KS ci ratio: 1.816914e-03	ci left: 5.228426e-01	ci right 5.237937e-01	k: 2218869	n:4240000
OR8K5   4240000 perm   7408 sec   (572 perm/sec)   p_kst 5.233182e-01   p_cons 1.853774e-04   p_joint 7.469340e-04

Joint ci ratio: 6.946616e-02	ci left: 7.226934e-04	ci right 7.749319e-04	k: 3181	n:4250000
Cons ci ratio: 1.395427e-01	ci left: 1.726915e-04	ci right 1.988209e-04	k: 788	n:4250000
KS ci ratio: 1.814875e-03	ci left: 5.228158e-01	ci right 5.237658e-01	k: 2223986	n:4250000
OR8K5   4250000 perm   7439 sec   (571 perm/sec)   p_kst 5.232908e-01   p_cons 1.854118e-04   p_joint 7.484706e-04

Joint ci ratio: 6.937900e-02	ci left: 7.228422e-04	ci right 7.750233e-04	k: 3189	n:4260000
Cons ci ratio: 1.395428e-01	ci left: 1.722861e-04	ci right 1.983542e-04	k: 788	n:4260000
KS ci ratio: 1.812687e-03	ci left: 5.228319e-01	ci right 5.237807e-01	k: 2229285	n:4260000
OR8K5   4260000 perm   7470 sec   (570 perm/sec)   p_kst 5.233063e-01   p_cons 1.849765e-04   p_joint 7.485915e-04

Joint ci ratio: 6.961972e-02	ci left: 7.160866e-04	ci right 7.679666e-04	k: 3167	n:4270000
Cons ci ratio: 1.394544e-01	ci left: 1.721087e-04	ci right 1.981321e-04	k: 789	n:4270000
KS ci ratio: 1.810536e-03	ci left: 5.228400e-01	ci right 5.237876e-01	k: 2234550	n:4270000
OR8K5   4270000 perm   7501 sec   (569 perm/sec)   p_kst 5.233138e-01   p_cons 1.847775e-04   p_joint 7.416862e-04

Joint ci ratio: 6.953198e-02	ci left: 7.162502e-04	ci right 7.680740e-04	k: 3175	n:4280000
Cons ci ratio: 1.393663e-01	ci left: 1.719320e-04	ci right 1.979109e-04	k: 790	n:4280000
KS ci ratio: 1.808405e-03	ci left: 5.228447e-01	ci right 5.237913e-01	k: 2239801	n:4280000
OR8K5   4280000 perm   7533 sec   (568 perm/sec)   p_kst 5.233180e-01   p_cons 1.845794e-04   p_joint 7.418224e-04

Joint ci ratio: 6.946640e-02	ci left: 7.159549e-04	ci right 7.677065e-04	k: 3181	n:4290000
Cons ci ratio: 1.392783e-01	ci left: 1.717562e-04	ci right 1.976908e-04	k: 791	n:4290000
KS ci ratio: 1.806353e-03	ci left: 5.228293e-01	ci right 5.237748e-01	k: 2244966	n:4290000
OR8K5   4290000 perm   7564 sec   (567 perm/sec)   p_kst 5.233021e-01   p_cons 1.843823e-04   p_joint 7.414918e-04

Joint ci ratio: 6.969700e-02	ci left: 7.094910e-04	ci right 7.609526e-04	k: 3160	n:4300000
Cons ci ratio: 1.390152e-01	ci left: 1.720302e-04	ci right 1.979530e-04	k: 794	n:4300000
KS ci ratio: 1.804178e-03	ci left: 5.228504e-01	ci right 5.237947e-01	k: 2250287	n:4300000
OR8K5   4300000 perm   7596 sec   (566 perm/sec)   p_kst 5.233226e-01   p_cons 1.846512e-04   p_joint 7.348837e-04

Joint ci ratio: 6.959798e-02	ci left: 7.098967e-04	ci right 7.613115e-04	k: 3169	n:4310000
Cons ci ratio: 1.386668e-01	ci left: 1.725269e-04	ci right 1.984540e-04	k: 798	n:4310000
KS ci ratio: 1.802080e-03	ci left: 5.228518e-01	ci right 5.237951e-01	k: 2255524	n:4310000
OR8K5   4310000 perm   7628 sec   (565 perm/sec)   p_kst 5.233234e-01   p_cons 1.851508e-04   p_joint 7.352668e-04

Joint ci ratio: 6.953222e-02	ci left: 7.096181e-04	ci right 7.609623e-04	k: 3175	n:4320000
Cons ci ratio: 1.386668e-01	ci left: 1.721275e-04	ci right 1.979946e-04	k: 798	n:4320000
KS ci ratio: 1.800042e-03	ci left: 5.228388e-01	ci right 5.237810e-01	k: 2260699	n:4320000
OR8K5   4320000 perm   7659 sec   (564 perm/sec)   p_kst 5.233100e-01   p_cons 1.847222e-04   p_joint 7.349537e-04

Joint ci ratio: 6.948850e-02	ci left: 7.088870e-04	ci right 7.601447e-04	k: 3179	n:4330000
Cons ci ratio: 1.384936e-01	ci left: 1.721759e-04	ci right 1.980153e-04	k: 800	n:4330000
KS ci ratio: 1.797928e-03	ci left: 5.228488e-01	ci right 5.237899e-01	k: 2265973	n:4330000
OR8K5   4330000 perm   7691 sec   (563 perm/sec)   p_kst 5.233194e-01   p_cons 1.847575e-04   p_joint 7.341801e-04

Joint ci ratio: 6.931427e-02	ci left: 7.108763e-04	ci right 7.621438e-04	k: 3195	n:4340000
Cons ci ratio: 1.382349e-01	ci left: 1.724465e-04	ci right 1.982742e-04	k: 803	n:4340000
KS ci ratio: 1.795801e-03	ci left: 5.228645e-01	ci right 5.238046e-01	k: 2271272	n:4340000
OR8K5   4340000 perm   7723 sec   (562 perm/sec)   p_kst 5.233346e-01   p_cons 1.850230e-04   p_joint 7.361751e-04

Joint ci ratio: 6.918447e-02	ci left: 7.119530e-04	ci right 7.631981e-04	k: 3207	n:4350000
Cons ci ratio: 1.380633e-01	ci left: 1.724939e-04	ci right 1.982940e-04	k: 805	n:4350000
KS ci ratio: 1.793660e-03	ci left: 5.228861e-01	ci right 5.238251e-01	k: 2276597	n:4350000
OR8K5   4350000 perm   7756 sec   (561 perm/sec)   p_kst 5.233556e-01   p_cons 1.850575e-04   p_joint 7.372414e-04

Joint ci ratio: 6.913064e-02	ci left: 7.114470e-04	ci right 7.626143e-04	k: 3212	n:4360000
Cons ci ratio: 1.379777e-01	ci left: 1.723197e-04	ci right 1.980765e-04	k: 806	n:4360000
KS ci ratio: 1.791585e-03	ci left: 5.228914e-01	ci right 5.238292e-01	k: 2281851	n:4360000
OR8K5   4360000 perm   7787 sec   (560 perm/sec)   p_kst 5.233603e-01   p_cons 1.848624e-04   p_joint 7.366972e-04

Joint ci ratio: 6.903401e-02	ci left: 7.118429e-04	ci right 7.629642e-04	k: 3221	n:4370000
Cons ci ratio: 1.378071e-01	ci left: 1.723673e-04	ci right 1.980967e-04	k: 808	n:4370000
KS ci ratio: 1.789465e-03	ci left: 5.229112e-01	ci right 5.238480e-01	k: 2287169	n:4370000
OR8K5   4370000 perm   7819 sec   (559 perm/sec)   p_kst 5.233796e-01   p_cons 1.848970e-04   p_joint 7.370709e-04

Joint ci ratio: 6.893778e-02	ci left: 7.122371e-04	ci right 7.633125e-04	k: 3230	n:4380000
Cons ci ratio: 1.377220e-01	ci left: 1.721942e-04	ci right 1.978806e-04	k: 809	n:4380000
KS ci ratio: 1.787470e-03	ci left: 5.228979e-01	ci right 5.238336e-01	k: 2292342	n:4380000
OR8K5   4380000 perm   7851 sec   (558 perm/sec)   p_kst 5.233658e-01   p_cons 1.847032e-04   p_joint 7.374429e-04

Joint ci ratio: 6.883133e-02	ci left: 7.128533e-04	ci right 7.638909e-04	k: 3240	n:4390000
Cons ci ratio: 1.377220e-01	ci left: 1.718020e-04	ci right 1.974298e-04	k: 809	n:4390000
KS ci ratio: 1.785435e-03	ci left: 5.228980e-01	ci right 5.238327e-01	k: 2297574	n:4390000
OR8K5   4390000 perm   7884 sec   (557 perm/sec)   p_kst 5.233654e-01   p_cons 1.842825e-04   p_joint 7.380410e-04

Joint ci ratio: 6.876771e-02	ci left: 7.125734e-04	ci right 7.635419e-04	k: 3246	n:4400000
Cons ci ratio: 1.375523e-01	ci left: 1.718504e-04	ci right 1.974513e-04	k: 811	n:4400000
KS ci ratio: 1.783405e-03	ci left: 5.228984e-01	ci right 5.238320e-01	k: 2302807	n:4400000
OR8K5   4400000 perm   7917 sec   (556 perm/sec)   p_kst 5.233652e-01   p_cons 1.843182e-04   p_joint 7.377273e-04

Joint ci ratio: 6.870427e-02	ci left: 7.122947e-04	ci right 7.631944e-04	k: 3252	n:4410000
Cons ci ratio: 1.375524e-01	ci left: 1.714607e-04	ci right 1.970036e-04	k: 811	n:4410000
KS ci ratio: 1.781322e-03	ci left: 5.229158e-01	ci right 5.238483e-01	k: 2308115	n:4410000
OR8K5   4410000 perm   7949 sec   (555 perm/sec)   p_kst 5.233821e-01   p_cons 1.839002e-04   p_joint 7.374150e-04

Joint ci ratio: 6.936906e-02	ci left: 6.968980e-04	ci right 7.471987e-04	k: 3190	n:4420000
Cons ci ratio: 1.375524e-01	ci left: 1.710728e-04	ci right 1.965579e-04	k: 811	n:4420000
KS ci ratio: 1.779335e-03	ci left: 5.229080e-01	ci right 5.238395e-01	k: 2313312	n:4420000
OR8K5   4420000 perm   7982 sec   (554 perm/sec)   p_kst 5.233738e-01   p_cons 1.834842e-04   p_joint 7.217195e-04

Joint ci ratio: 6.927142e-02	ci left: 6.973213e-04	ci right 7.475788e-04	k: 3199	n:4430000
Cons ci ratio: 1.374678e-01	ci left: 1.709046e-04	ci right 1.963477e-04	k: 812	n:4430000
KS ci ratio: 1.777305e-03	ci left: 5.229145e-01	ci right 5.238449e-01	k: 2318572	n:4430000
OR8K5   4430000 perm   8015 sec   (553 perm/sec)   p_kst 5.233797e-01   p_cons 1.832957e-04   p_joint 7.221219e-04

Joint ci ratio: 6.918499e-02	ci left: 6.975213e-04	ci right 7.477281e-04	k: 3207	n:4440000
Cons ci ratio: 1.371308e-01	ci left: 1.713896e-04	ci right 1.968373e-04	k: 816	n:4440000
KS ci ratio: 1.775270e-03	ci left: 5.229240e-01	ci right 5.238534e-01	k: 2323846	n:4440000
OR8K5   4440000 perm   8046 sec   (552 perm/sec)   p_kst 5.233887e-01   p_cons 1.837838e-04   p_joint 7.222973e-04

Joint ci ratio: 6.912039e-02	ci left: 6.972789e-04	ci right 7.474194e-04	k: 3213	n:4450000
Cons ci ratio: 1.369633e-01	ci left: 1.714385e-04	ci right 1.968598e-04	k: 818	n:4450000
KS ci ratio: 1.773229e-03	ci left: 5.229372e-01	ci right 5.238655e-01	k: 2329136	n:4450000
OR8K5   4450000 perm   8079 sec   (551 perm/sec)   p_kst 5.234013e-01   p_cons 1.838202e-04   p_joint 7.220225e-04

Joint ci ratio: 6.903452e-02	ci left: 6.974782e-04	ci right 7.475683e-04	k: 3221	n:4460000
Cons ci ratio: 1.367963e-01	ci left: 1.714872e-04	ci right 1.968822e-04	k: 820	n:4460000
KS ci ratio: 1.771267e-03	ci left: 5.229301e-01	ci right 5.238573e-01	k: 2334336	n:4460000
OR8K5   4460000 perm   8111 sec   (550 perm/sec)   p_kst 5.233937e-01   p_cons 1.838565e-04   p_joint 7.221973e-04

Joint ci ratio: 6.898104e-02	ci left: 6.970171e-04	ci right 7.470337e-04	k: 3226	n:4470000
Cons ci ratio: 1.365471e-01	ci left: 1.717518e-04	ci right 1.971358e-04	k: 823	n:4470000
KS ci ratio: 1.769289e-03	ci left: 5.229295e-01	ci right 5.238557e-01	k: 2339565	n:4470000
OR8K5   4470000 perm   8143 sec   (549 perm/sec)   p_kst 5.233926e-01   p_cons 1.841163e-04   p_joint 7.217002e-04

Joint ci ratio: 6.892768e-02	ci left: 6.965581e-04	ci right 7.465016e-04	k: 3231	n:4480000
Cons ci ratio: 1.364643e-01	ci left: 1.715840e-04	ci right 1.969266e-04	k: 824	n:4480000
KS ci ratio: 1.767323e-03	ci left: 5.229271e-01	ci right 5.238523e-01	k: 2344786	n:4480000
OR8K5   4480000 perm   8176 sec   (548 perm/sec)   p_kst 5.233897e-01   p_cons 1.839286e-04   p_joint 7.212054e-04

Joint ci ratio: 6.889574e-02	ci left: 6.956634e-04	ci right 7.455187e-04	k: 3234	n:4490000
Cons ci ratio: 1.362168e-01	ci left: 1.718472e-04	ci right 1.971789e-04	k: 827	n:4490000
KS ci ratio: 1.765364e-03	ci left: 5.229250e-01	ci right 5.238492e-01	k: 2350008	n:4490000
OR8K5   4490000 perm   8208 sec   (547 perm/sec)   p_kst 5.233871e-01   p_cons 1.841871e-04   p_joint 7.202673e-04

Joint ci ratio: 6.465442e-02	ci left: 7.898285e-04	ci right 8.428172e-04	k: 3672	n:4500000
Cons ci ratio: 1.358890e-01	ci left: 1.723239e-04	ci right 1.976599e-04	k: 831	n:4500000
KS ci ratio: 1.763390e-03	ci left: 5.229286e-01	ci right 5.238518e-01	k: 2355256	n:4500000
OR8K5   4500000 perm   8241 sec   (546 perm/sec)   p_kst 5.233902e-01   p_cons 1.846667e-04   p_joint 8.160000e-04

Joint ci ratio: 6.455781e-02	ci left: 7.904768e-04	ci right 8.434269e-04	k: 3683	n:4510000
Cons ci ratio: 1.358074e-01	ci left: 1.721560e-04	ci right 1.974508e-04	k: 832	n:4510000
KS ci ratio: 1.761472e-03	ci left: 5.229183e-01	ci right 5.238404e-01	k: 2360441	n:4510000
OR8K5   4510000 perm   8274 sec   (545 perm/sec)   p_kst 5.233794e-01   p_cons 1.844789e-04   p_joint 8.166297e-04

Joint ci ratio: 6.450531e-02	ci left: 7.900340e-04	ci right 8.429097e-04	k: 3689	n:4520000
Cons ci ratio: 1.357260e-01	ci left: 1.719889e-04	ci right 1.972428e-04	k: 833	n:4520000
KS ci ratio: 1.759479e-03	ci left: 5.229312e-01	ci right 5.238523e-01	k: 2365731	n:4520000
OR8K5   4520000 perm   8307 sec   (544 perm/sec)   p_kst 5.233918e-01   p_cons 1.842920e-04   p_joint 8.161504e-04

Joint ci ratio: 6.447914e-02	ci left: 7.889415e-04	ci right 8.417220e-04	k: 3692	n:4530000
Cons ci ratio: 1.354825e-01	ci left: 1.722490e-04	ci right 1.974920e-04	k: 836	n:4530000
KS ci ratio: 1.757576e-03	ci left: 5.229203e-01	ci right 5.238404e-01	k: 2370913	n:4530000
OR8K5   4530000 perm   8339 sec   (543 perm/sec)   p_kst 5.233804e-01   p_cons 1.845475e-04   p_joint 8.150110e-04

Joint ci ratio: 6.495624e-02	ci left: 7.755018e-04	ci right 8.277814e-04	k: 3638	n:4540000
Cons ci ratio: 1.352403e-01	ci left: 1.725080e-04	ci right 1.977402e-04	k: 839	n:4540000
KS ci ratio: 1.755657e-03	ci left: 5.229158e-01	ci right 5.238349e-01	k: 2376124	n:4540000
OR8K5   4540000 perm   8372 sec   (542 perm/sec)   p_kst 5.233753e-01   p_cons 1.848018e-04   p_joint 8.013216e-04

Joint ci ratio: 6.519881e-02	ci left: 7.679598e-04	ci right 8.199316e-04	k: 3611	n:4550000
Cons ci ratio: 1.349994e-01	ci left: 1.727659e-04	ci right 1.979872e-04	k: 842	n:4550000
KS ci ratio: 1.753703e-03	ci left: 5.229229e-01	ci right 5.238410e-01	k: 2381388	n:4550000
OR8K5   4550000 perm   8406 sec   (541 perm/sec)   p_kst 5.233820e-01   p_cons 1.850549e-04   p_joint 7.936264e-04

Joint ci ratio: 6.551732e-02	ci left: 7.587256e-04	ci right 8.103328e-04	k: 3576	n:4560000
Cons ci ratio: 1.347599e-01	ci left: 1.730228e-04	ci right 1.982331e-04	k: 845	n:4560000
KS ci ratio: 1.751818e-03	ci left: 5.229125e-01	ci right 5.238296e-01	k: 2386572	n:4560000
OR8K5   4560000 perm   8439 sec   (540 perm/sec)   p_kst 5.233711e-01   p_cons 1.853070e-04   p_joint 7.842105e-04

Joint ci ratio: 6.545332e-02	ci left: 7.585720e-04	ci right 8.101164e-04	k: 3583	n:4570000
Cons ci ratio: 1.345215e-01	ci left: 1.732785e-04	ci right 1.984779e-04	k: 848	n:4570000
KS ci ratio: 1.749891e-03	ci left: 5.229155e-01	ci right 5.238315e-01	k: 2391817	n:4570000
OR8K5   4570000 perm   8472 sec   (539 perm/sec)   p_kst 5.233735e-01   p_cons 1.855580e-04   p_joint 7.840263e-04

Joint ci ratio: 6.534399e-02	ci left: 7.594930e-04	ci right 8.110105e-04	k: 3595	n:4580000
Cons ci ratio: 1.342845e-01	ci left: 1.735332e-04	ci right 1.987216e-04	k: 851	n:4580000
KS ci ratio: 1.747944e-03	ci left: 5.229261e-01	ci right 5.238411e-01	k: 2397097	n:4580000
OR8K5   4580000 perm   8505 sec   (539 perm/sec)   p_kst 5.233836e-01   p_cons 1.858079e-04   p_joint 7.849345e-04

Joint ci ratio: 6.528048e-02	ci left: 7.593384e-04	ci right 8.107936e-04	k: 3602	n:4590000
Cons ci ratio: 1.342058e-01	ci left: 1.733656e-04	ci right 1.985138e-04	k: 852	n:4590000
KS ci ratio: 1.746012e-03	ci left: 5.229342e-01	ci right 5.238483e-01	k: 2402366	n:4590000
OR8K5   4590000 perm   8538 sec   (538 perm/sec)   p_kst 5.233913e-01   p_cons 1.856209e-04   p_joint 7.847495e-04

Joint ci ratio: 6.520813e-02	ci left: 7.593985e-04	ci right 8.107985e-04	k: 3610	n:4600000
Cons ci ratio: 1.342058e-01	ci left: 1.729888e-04	ci right 1.980823e-04	k: 852	n:4600000
KS ci ratio: 1.744097e-03	ci left: 5.229395e-01	ci right 5.238526e-01	k: 2407622	n:4600000
OR8K5   4600000 perm   8571 sec   (537 perm/sec)   p_kst 5.233961e-01   p_cons 1.852174e-04   p_joint 7.847826e-04

Joint ci ratio: 6.524436e-02	ci left: 7.568976e-04	ci right 8.081579e-04	k: 3606	n:4610000
Cons ci ratio: 1.341272e-01	ci left: 1.728231e-04	ci right 1.978768e-04	k: 853	n:4610000
KS ci ratio: 1.742218e-03	ci left: 5.229361e-01	ci right 5.238482e-01	k: 2412838	n:4610000
OR8K5   4610000 perm   8604 sec   (536 perm/sec)   p_kst 5.233922e-01   p_cons 1.850325e-04   p_joint 7.822126e-04

Joint ci ratio: 6.516311e-02	ci left: 7.571756e-04	ci right 8.083885e-04	k: 3615	n:4620000
Cons ci ratio: 1.338922e-01	ci left: 1.730767e-04	ci right 1.981196e-04	k: 856	n:4620000
KS ci ratio: 1.740379e-03	ci left: 5.229228e-01	ci right 5.238339e-01	k: 2418008	n:4620000
OR8K5   4620000 perm   8638 sec   (535 perm/sec)   p_kst 5.233784e-01   p_cons 1.852814e-04   p_joint 7.824675e-04

Joint ci ratio: 6.510013e-02	ci left: 7.570275e-04	ci right 8.081790e-04	k: 3622	n:4630000
Cons ci ratio: 1.337363e-01	ci left: 1.731203e-04	ci right 1.981381e-04	k: 858	n:4630000
KS ci ratio: 1.738443e-03	ci left: 5.229393e-01	ci right 5.238494e-01	k: 2423316	n:4630000
OR8K5   4630000 perm   8671 sec   (534 perm/sec)   p_kst 5.233944e-01   p_cons 1.853132e-04   p_joint 7.822894e-04

Joint ci ratio: 6.501942e-02	ci left: 7.573041e-04	ci right 8.084084e-04	k: 3631	n:4640000
Cons ci ratio: 1.335808e-01	ci left: 1.731639e-04	ci right 1.981565e-04	k: 860	n:4640000
KS ci ratio: 1.736573e-03	ci left: 5.229385e-01	ci right 5.238476e-01	k: 2428544	n:4640000
OR8K5   4640000 perm   8704 sec   (533 perm/sec)   p_kst 5.233931e-01   p_cons 1.853448e-04   p_joint 7.825431e-04

Joint ci ratio: 6.495686e-02	ci left: 7.571564e-04	ci right 8.081997e-04	k: 3638	n:4650000
Cons ci ratio: 1.334260e-01	ci left: 1.732072e-04	ci right 1.981748e-04	k: 862	n:4650000
KS ci ratio: 1.734694e-03	ci left: 5.229423e-01	ci right 5.238504e-01	k: 2433793	n:4650000
OR8K5   4650000 perm   8738 sec   (532 perm/sec)   p_kst 5.233963e-01   p_cons 1.853763e-04   p_joint 7.823656e-04

Joint ci ratio: 6.488557e-02	ci left: 7.572204e-04	ci right 8.082100e-04	k: 3646	n:4660000
Cons ci ratio: 1.331946e-01	ci left: 1.734578e-04	ci right 1.984148e-04	k: 865	n:4660000
KS ci ratio: 1.732811e-03	ci left: 5.229488e-01	ci right 5.238559e-01	k: 2439055	n:4660000
OR8K5   4660000 perm   8771 sec   (531 perm/sec)   p_kst 5.234024e-01   p_cons 1.856223e-04   p_joint 7.824034e-04

Joint ci ratio: 6.477906e-02	ci left: 7.581269e-04	ci right 8.090906e-04	k: 3658	n:4670000
Cons ci ratio: 1.329645e-01	ci left: 1.737074e-04	ci right 1.986537e-04	k: 868	n:4670000
KS ci ratio: 1.730932e-03	ci left: 5.229557e-01	ci right 5.238619e-01	k: 2444319	n:4670000
OR8K5   4670000 perm   8805 sec   (530 perm/sec)   p_kst 5.234088e-01   p_cons 1.858672e-04   p_joint 7.832976e-04

Joint ci ratio: 6.472602e-02	ci left: 7.577683e-04	ci right 8.086646e-04	k: 3664	n:4680000
Cons ci ratio: 1.328881e-01	ci left: 1.735428e-04	ci right 1.984500e-04	k: 869	n:4680000
KS ci ratio: 1.729045e-03	ci left: 5.229668e-01	ci right 5.238720e-01	k: 2449603	n:4680000
OR8K5   4680000 perm   8838 sec   (530 perm/sec)   p_kst 5.234194e-01   p_cons 1.856838e-04   p_joint 7.829060e-04

Joint ci ratio: 6.477916e-02	ci left: 7.548939e-04	ci right 8.056404e-04	k: 3658	n:4690000
Cons ci ratio: 1.328118e-01	ci left: 1.733789e-04	ci right 1.982472e-04	k: 870	n:4690000
KS ci ratio: 1.727181e-03	ci left: 5.229728e-01	ci right 5.238771e-01	k: 2454863	n:4690000
OR8K5   4690000 perm   8872 sec   (529 perm/sec)   p_kst 5.234249e-01   p_cons 1.855011e-04   p_joint 7.799574e-04

Joint ci ratio: 6.638744e-02	ci left: 7.166638e-04	ci right 7.660823e-04	k: 3483	n:4700000
Cons ci ratio: 1.326596e-01	ci left: 1.734214e-04	ci right 1.982650e-04	k: 872	n:4700000
KS ci ratio: 1.725282e-03	ci left: 5.229909e-01	ci right 5.238942e-01	k: 2460180	n:4700000
OR8K5   4700000 perm   8906 sec   (528 perm/sec)   p_kst 5.234426e-01   p_cons 1.855319e-04   p_joint 7.410638e-04

Joint ci ratio: 6.633036e-02	ci left: 7.163949e-04	ci right 7.657508e-04	k: 3489	n:4710000
Cons ci ratio: 1.326596e-01	ci left: 1.730532e-04	ci right 1.978441e-04	k: 872	n:4710000
KS ci ratio: 1.723424e-03	ci left: 5.229989e-01	ci right 5.239013e-01	k: 2465450	n:4710000
OR8K5   4710000 perm   8941 sec   (527 perm/sec)   p_kst 5.234501e-01   p_cons 1.851380e-04   p_joint 7.407643e-04

Joint ci ratio: 6.626394e-02	ci left: 7.163356e-04	ci right 7.656361e-04	k: 3496	n:4720000
Cons ci ratio: 1.326596e-01	ci left: 1.726866e-04	ci right 1.974249e-04	k: 872	n:4720000
KS ci ratio: 1.721591e-03	ci left: 5.230012e-01	ci right 5.239026e-01	k: 2470693	n:4720000
OR8K5   4720000 perm   8975 sec   (526 perm/sec)   p_kst 5.234519e-01   p_cons 1.847458e-04   p_joint 7.406780e-04

Joint ci ratio: 6.618827e-02	ci left: 7.164845e-04	ci right 7.657368e-04	k: 3504	n:4730000
Cons ci ratio: 1.325079e-01	ci left: 1.727303e-04	ci right 1.974444e-04	k: 874	n:4730000
KS ci ratio: 1.719785e-03	ci left: 5.229973e-01	ci right 5.238978e-01	k: 2475907	n:4730000
OR8K5   4730000 perm   9010 sec   (525 perm/sec)   p_kst 5.234476e-01   p_cons 1.847780e-04   p_joint 7.408034e-04

Joint ci ratio: 6.615999e-02	ci left: 7.155953e-04	ci right 7.647647e-04	k: 3507	n:4740000
Cons ci ratio: 1.324323e-01	ci left: 1.725699e-04	ci right 1.972458e-04	k: 875	n:4740000
KS ci ratio: 1.717951e-03	ci left: 5.230032e-01	ci right 5.239027e-01	k: 2481167	n:4740000
OR8K5   4740000 perm   9044 sec   (524 perm/sec)   p_kst 5.234530e-01   p_cons 1.845992e-04   p_joint 7.398734e-04

Joint ci ratio: 6.617893e-02	ci left: 7.136747e-04	ci right 7.627267e-04	k: 3505	n:4750000
Cons ci ratio: 1.322814e-01	ci left: 1.726137e-04	ci right 1.972655e-04	k: 877	n:4750000
KS ci ratio: 1.716097e-03	ci left: 5.230168e-01	ci right 5.239153e-01	k: 2486464	n:4750000
OR8K5   4750000 perm   9078 sec   (523 perm/sec)   p_kst 5.234661e-01   p_cons 1.846316e-04   p_joint 7.378947e-04

Joint ci ratio: 6.614123e-02	ci left: 7.130018e-04	ci right 7.619785e-04	k: 3509	n:4760000
Cons ci ratio: 1.322061e-01	ci left: 1.724542e-04	ci right 1.970681e-04	k: 878	n:4760000
KS ci ratio: 1.714273e-03	ci left: 5.230233e-01	ci right 5.239208e-01	k: 2491727	n:4760000
OR8K5   4760000 perm   9112 sec   (522 perm/sec)   p_kst 5.234721e-01   p_cons 1.844538e-04   p_joint 7.371849e-04

Joint ci ratio: 6.617903e-02	ci left: 7.106823e-04	ci right 7.595287e-04	k: 3505	n:4770000
Cons ci ratio: 1.321310e-01	ci left: 1.722954e-04	ci right 1.968715e-04	k: 879	n:4770000
KS ci ratio: 1.712515e-03	ci left: 5.230120e-01	ci right 5.239087e-01	k: 2496906	n:4770000
OR8K5   4770000 perm   9146 sec   (522 perm/sec)   p_kst 5.234604e-01   p_cons 1.842767e-04   p_joint 7.348008e-04

Joint ci ratio: 6.611307e-02	ci left: 7.106358e-04	ci right 7.594284e-04	k: 3512	n:4780000
Cons ci ratio: 1.319063e-01	ci left: 1.725418e-04	ci right 1.971080e-04	k: 882	n:4780000
KS ci ratio: 1.710768e-03	ci left: 5.229994e-01	ci right 5.238951e-01	k: 2502078	n:4780000
OR8K5   4780000 perm   9180 sec   (521 perm/sec)   p_kst 5.234473e-01   p_cons 1.845188e-04   p_joint 7.347280e-04

Joint ci ratio: 6.601915e-02	ci left: 7.112054e-04	ci right 7.599651e-04	k: 3522	n:4790000
Cons ci ratio: 1.316828e-01	ci left: 1.727872e-04	ci right 1.973435e-04	k: 885	n:4790000
KS ci ratio: 1.708984e-03	ci left: 5.229990e-01	ci right 5.238937e-01	k: 2507308	n:4790000
OR8K5   4790000 perm   9215 sec   (520 perm/sec)   p_kst 5.234463e-01   p_cons 1.847599e-04   p_joint 7.352818e-04

Joint ci ratio: 6.600046e-02	ci left: 7.101335e-04	ci right 7.588054e-04	k: 3524	n:4800000
Cons ci ratio: 1.316828e-01	ci left: 1.724273e-04	ci right 1.969323e-04	k: 885	n:4800000
KS ci ratio: 1.707225e-03	ci left: 5.229929e-01	ci right 5.238867e-01	k: 2512511	n:4800000
OR8K5   4800000 perm   9249 sec   (519 perm/sec)   p_kst 5.234398e-01   p_cons 1.843750e-04   p_joint 7.341667e-04

Joint ci ratio: 6.597242e-02	ci left: 7.092705e-04	ci right 7.578618e-04	k: 3527	n:4810000
Cons ci ratio: 1.314604e-01	ci left: 1.726720e-04	ci right 1.971671e-04	k: 888	n:4810000
KS ci ratio: 1.705477e-03	ci left: 5.229853e-01	ci right 5.238782e-01	k: 2517707	n:4810000
OR8K5   4810000 perm   9284 sec   (518 perm/sec)   p_kst 5.234318e-01   p_cons 1.846154e-04   p_joint 7.332640e-04

Joint ci ratio: 6.594442e-02	ci left: 7.084111e-04	ci right 7.569222e-04	k: 3530	n:4820000
Cons ci ratio: 1.314604e-01	ci left: 1.723137e-04	ci right 1.967581e-04	k: 888	n:4820000
KS ci ratio: 1.703660e-03	ci left: 5.229996e-01	ci right 5.238916e-01	k: 2523008	n:4820000
OR8K5   4820000 perm   9319 sec   (517 perm/sec)   p_kst 5.234456e-01   p_cons 1.842324e-04   p_joint 7.323651e-04

Joint ci ratio: 6.588847e-02	ci left: 7.081662e-04	ci right 7.566177e-04	k: 3536	n:4830000
Cons ci ratio: 1.313866e-01	ci left: 1.721572e-04	ci right 1.965645e-04	k: 889	n:4830000
KS ci ratio: 1.701905e-03	ci left: 5.229971e-01	ci right 5.238882e-01	k: 2528228	n:4830000
OR8K5   4830000 perm   9354 sec   (516 perm/sec)   p_kst 5.234427e-01   p_cons 1.840580e-04   p_joint 7.320911e-04

Joint ci ratio: 6.581408e-02	ci left: 7.083287e-04	ci right 7.567346e-04	k: 3544	n:4840000
Cons ci ratio: 1.313128e-01	ci left: 1.720013e-04	ci right 1.963718e-04	k: 890	n:4840000
KS ci ratio: 1.700128e-03	ci left: 5.230029e-01	ci right 5.238930e-01	k: 2533488	n:4840000
OR8K5   4840000 perm   9388 sec   (516 perm/sec)   p_kst 5.234479e-01   p_cons 1.838843e-04   p_joint 7.322314e-04

Joint ci ratio: 6.573068e-02	ci left: 7.086934e-04	ci right 7.570605e-04	k: 3553	n:4850000
Cons ci ratio: 1.312392e-01	ci left: 1.718461e-04	ci right 1.961799e-04	k: 891	n:4850000
KS ci ratio: 1.698426e-03	ci left: 5.229884e-01	ci right 5.238776e-01	k: 2538650	n:4850000
OR8K5   4850000 perm   9423 sec   (515 perm/sec)   p_kst 5.234330e-01   p_cons 1.837113e-04   p_joint 7.325773e-04

Joint ci ratio: 6.569374e-02	ci left: 7.080447e-04	ci right 7.563393e-04	k: 3557	n:4860000
Cons ci ratio: 1.311657e-01	ci left: 1.716915e-04	ci right 1.959887e-04	k: 892	n:4860000
KS ci ratio: 1.696690e-03	ci left: 5.229851e-01	ci right 5.238733e-01	k: 2543866	n:4860000
OR8K5   4860000 perm   9458 sec   (514 perm/sec)   p_kst 5.234292e-01   p_cons 1.835391e-04   p_joint 7.318930e-04

Joint ci ratio: 6.240175e-02	ci left: 7.843820e-04	ci right 8.351057e-04	k: 3942	n:4870000
Cons ci ratio: 1.310191e-01	ci left: 1.717362e-04	ci right 1.960104e-04	k: 894	n:4870000
KS ci ratio: 1.694901e-03	ci left: 5.229992e-01	ci right 5.238866e-01	k: 2549167	n:4870000
OR8K5   4870000 perm   9494 sec   (513 perm/sec)   p_kst 5.234429e-01   p_cons 1.835729e-04   p_joint 8.094456e-04

Joint ci ratio: 6.231487e-02	ci left: 7.849936e-04	ci right 8.356837e-04	k: 3953	n:4880000
Cons ci ratio: 1.309460e-01	ci left: 1.715824e-04	ci right 1.958204e-04	k: 895	n:4880000
KS ci ratio: 1.693145e-03	ci left: 5.230051e-01	ci right 5.238916e-01	k: 2554428	n:4880000
OR8K5   4880000 perm   9529 sec   (512 perm/sec)   p_kst 5.234484e-01   p_cons 1.834016e-04   p_joint 8.100410e-04

Joint ci ratio: 6.254489e-02	ci left: 7.775503e-04	ci right 8.279518e-04	k: 3924	n:4890000
Cons ci ratio: 1.307273e-01	ci left: 1.718250e-04	ci right 1.960535e-04	k: 898	n:4890000
KS ci ratio: 1.691438e-03	ci left: 5.229981e-01	ci right 5.238837e-01	k: 2559626	n:4890000
OR8K5   4890000 perm   9564 sec   (511 perm/sec)   p_kst 5.234409e-01   p_cons 1.836401e-04   p_joint 8.024540e-04

Joint ci ratio: 6.247330e-02	ci left: 7.777715e-04	ci right 8.281275e-04	k: 3933	n:4900000
Cons ci ratio: 1.304374e-01	ci left: 1.722640e-04	ci right 1.964964e-04	k: 902	n:4900000
KS ci ratio: 1.689720e-03	ci left: 5.229958e-01	ci right 5.238805e-01	k: 2564847	n:4900000
OR8K5   4900000 perm   9600 sec   (510 perm/sec)   p_kst 5.234382e-01   p_cons 1.840816e-04   p_joint 8.026531e-04

Joint ci ratio: 6.244159e-02	ci left: 7.769894e-04	ci right 8.272683e-04	k: 3937	n:4910000
Cons ci ratio: 1.303652e-01	ci left: 1.721102e-04	ci right 1.963065e-04	k: 903	n:4910000
KS ci ratio: 1.688034e-03	ci left: 5.229860e-01	ci right 5.238698e-01	k: 2570031	n:4910000
OR8K5   4910000 perm   9636 sec   (510 perm/sec)   p_kst 5.234279e-01   p_cons 1.839104e-04   p_joint 8.018330e-04

Joint ci ratio: 6.233085e-02	ci left: 7.782113e-04	ci right 8.284767e-04	k: 3951	n:4920000
Cons ci ratio: 1.301495e-01	ci left: 1.723502e-04	ci right 1.965371e-04	k: 906	n:4920000
KS ci ratio: 1.686312e-03	ci left: 5.229880e-01	ci right 5.238709e-01	k: 2575273	n:4920000
OR8K5   4920000 perm   9672 sec   (509 perm/sec)   p_kst 5.234295e-01   p_cons 1.841463e-04   p_joint 8.030488e-04

Joint ci ratio: 6.221285e-02	ci left: 7.796280e-04	ci right 8.298862e-04	k: 3966	n:4930000
Cons ci ratio: 1.297922e-01	ci left: 1.729819e-04	ci right 1.971856e-04	k: 911	n:4930000
KS ci ratio: 1.684543e-03	ci left: 5.230057e-01	ci right 5.238876e-01	k: 2580592	n:4930000
OR8K5   4930000 perm   9709 sec   (508 perm/sec)   p_kst 5.234467e-01   p_cons 1.847870e-04   p_joint 8.044625e-04

Joint ci ratio: 6.224432e-02	ci left: 7.772527e-04	ci right 8.273840e-04	k: 3962	n:4940000
Cons ci ratio: 1.296501e-01	ci left: 1.730234e-04	ci right 1.972044e-04	k: 913	n:4940000
KS ci ratio: 1.682839e-03	ci left: 5.230056e-01	ci right 5.238867e-01	k: 2585824	n:4940000
OR8K5   4940000 perm   9746 sec   (507 perm/sec)   p_kst 5.234462e-01   p_cons 1.848178e-04   p_joint 8.020243e-04

Joint ci ratio: 6.215809e-02	ci left: 7.778701e-04	ci right 8.279693e-04	k: 3973	n:4950000
Cons ci ratio: 1.294378e-01	ci left: 1.732603e-04	ci right 1.974317e-04	k: 916	n:4950000
KS ci ratio: 1.681132e-03	ci left: 5.230078e-01	ci right 5.238880e-01	k: 2591067	n:4950000
OR8K5   4950000 perm   9782 sec   (506 perm/sec)   p_kst 5.234479e-01   p_cons 1.850505e-04   p_joint 8.026263e-04

Joint ci ratio: 6.212686e-02	ci left: 7.770958e-04	ci right 8.271190e-04	k: 3977	n:4960000
Cons ci ratio: 1.293673e-01	ci left: 1.731061e-04	ci right 1.972418e-04	k: 917	n:4960000
KS ci ratio: 1.679482e-03	ci left: 5.229946e-01	ci right 5.238739e-01	k: 2596234	n:4960000
OR8K5   4960000 perm   9818 sec   (505 perm/sec)   p_kst 5.234343e-01   p_cons 1.848790e-04   p_joint 8.018145e-04

Joint ci ratio: 6.205669e-02	ci left: 7.773150e-04	ci right 8.272937e-04	k: 3986	n:4970000
Cons ci ratio: 1.292266e-01	ci left: 1.731472e-04	ci right 1.972604e-04	k: 919	n:4970000
KS ci ratio: 1.677807e-03	ci left: 5.229906e-01	ci right 5.238690e-01	k: 2601446	n:4970000
OR8K5   4970000 perm   9854 sec   (504 perm/sec)   p_kst 5.234298e-01   p_cons 1.849095e-04   p_joint 8.020121e-04

Joint ci ratio: 6.200230e-02	ci left: 7.771379e-04	ci right 8.270599e-04	k: 3993	n:4980000
Cons ci ratio: 1.292266e-01	ci left: 1.727995e-04	ci right 1.968643e-04	k: 919	n:4980000
KS ci ratio: 1.676096e-03	ci left: 5.229986e-01	ci right 5.238761e-01	k: 2606718	n:4980000
OR8K5   4980000 perm   9890 sec   (504 perm/sec)   p_kst 5.234373e-01   p_cons 1.845382e-04   p_joint 8.018072e-04

Joint ci ratio: 6.195579e-02	ci left: 7.767643e-04	ci right 8.266235e-04	k: 3999	n:4990000
Cons ci ratio: 1.290864e-01	ci left: 1.728410e-04	ci right 1.968835e-04	k: 921	n:4990000
KS ci ratio: 1.674416e-03	ci left: 5.229989e-01	ci right 5.238756e-01	k: 2611952	n:4990000
OR8K5   4990000 perm   9926 sec   (503 perm/sec)   p_kst 5.234373e-01   p_cons 1.845691e-04   p_joint 8.014028e-04

Joint ci ratio: 6.192486e-02	ci left: 7.759983e-04	ci right 8.257827e-04	k: 4003	n:5000000
Cons ci ratio: 1.290864e-01	ci left: 1.724954e-04	ci right 1.964897e-04	k: 921	n:5000000
KS ci ratio: 1.672711e-03	ci left: 5.230083e-01	ci right 5.238841e-01	k: 2617231	n:5000000
OR8K5   5000000 perm   9962 sec   (502 perm/sec)   p_kst 5.234462e-01   p_cons 1.842000e-04   p_joint 8.006000e-04

Outputting figure to mutsig2_images.part000000000123/OR8K5.6_927_5000000_0.52345_0.0001842_0.0008006.png
                gene_name: OR8K5
               theta_stop: 0.13 
                    nperm: 5000000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.00018 
      ci_cons_bounds_left: 0.00017 
     ci_cons_bounds_right: 0.00020 
                  p_joint: 0.00080 
     ci_joint_bounds_left: 0.00078 
    ci_joint_bounds_right: 0.00083 

Current progress: 45 percent done.
OR5H2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.467494e-02	ci left: 7.072516e-01	ci right 7.250223e-01	k: 7162	n:10000
Cons ci ratio: 4.361100e-02	ci left: 4.370225e-01	ci right 4.566085e-01	k: 4468	n:10000
KS ci ratio: 2.537425e-02	ci left: 6.956504e-01	ci right 7.136303e-01	k: 7047	n:10000
OR5H2   10000 perm   1 sec   (7151 perm/sec)   p_kst 7.047000e-01   p_cons 4.468000e-01   p_joint 7.162000e-01

Outputting figure to mutsig2_images.part000000000123/OR5H2.5_949_10000_0.7047_0.4468_0.7162.png
                gene_name: OR5H2
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 46 percent done.
OR5M1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.048496e-02	ci left: 7.773223e-01	ci right 7.935111e-01	k: 7855	n:10000
Cons ci ratio: 4.597208e-02	ci left: 4.111978e-01	ci right 4.306483e-01	k: 4209	n:10000
KS ci ratio: 1.931253e-02	ci left: 7.967918e-01	ci right 8.124303e-01	k: 8047	n:10000
OR5M1   10000 perm   1 sec   (6834 perm/sec)   p_kst 8.047000e-01   p_cons 4.209000e-01   p_joint 7.855000e-01

Outputting figure to mutsig2_images.part000000000123/OR5M1.5_952_10000_0.8047_0.4209_0.7855.png
                gene_name: OR5M1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.79 

Current progress: 47 percent done.
OR5M10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.211664e-02	ci left: 5.886139e-01	ci right 6.079288e-01	k: 5983	n:10000
Cons ci ratio: 3.086850e-02	ci left: 6.075902e-01	ci right 6.267415e-01	k: 6172	n:10000
KS ci ratio: 4.682149e-02	ci left: 4.023300e-01	ci right 4.217213e-01	k: 4120	n:10000
OR5M10   10000 perm   1 sec   (7218 perm/sec)   p_kst 4.120000e-01   p_cons 6.172000e-01   p_joint 5.983000e-01

Outputting figure to mutsig2_images.part000000000123/OR5M10.5_952_10000_0.412_0.6172_0.5983.png
                gene_name: OR5M10
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 49 percent done.
OR5M3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.143814e-01	ci left: 9.905732e-02	ci right 1.111738e-01	k: 1050	n:10000
Cons ci ratio: 2.385065e-01	ci left: 2.315796e-02	ci right 2.952203e-02	k: 262	n:10000
KS ci ratio: 4.544803e-02	ci left: 4.167792e-01	ci right 4.362636e-01	k: 4265	n:10000
OR5M3   10000 perm   2 sec   (6422 perm/sec)   p_kst 4.265000e-01   p_cons 2.620000e-02   p_joint 1.050000e-01

Joint ci ratio: 9.958521e-02	ci left: 6.830848e-02	ci right 7.551658e-02	k: 1437	n:20000
Cons ci ratio: 1.796557e-01	ci left: 2.115822e-02	ci right 2.538195e-02	k: 464	n:20000
KS ci ratio: 3.178403e-02	ci left: 4.250703e-01	ci right 4.388495e-01	k: 8639	n:20000
OR5M3   20000 perm   3 sec   (5940 perm/sec)   p_kst 4.319500e-01   p_cons 2.320000e-02   p_joint 7.185000e-02

Joint ci ratio: 9.154307e-02	ci left: 5.495723e-02	ci right 6.026218e-02	k: 1727	n:30000
Cons ci ratio: 1.453614e-01	ci left: 2.194399e-02	ci right 2.541576e-02	k: 709	n:30000
KS ci ratio: 2.609827e-02	ci left: 4.235895e-01	ci right 4.348242e-01	k: 12876	n:30000
OR5M3   30000 perm   5 sec   (5745 perm/sec)   p_kst 4.292000e-01   p_cons 2.363333e-02   p_joint 5.756667e-02

Joint ci ratio: 7.534861e-02	ci left: 6.098211e-02	ci right 6.578152e-02	k: 2534	n:40000
Cons ci ratio: 1.215923e-01	ci left: 2.378312e-02	ci right 2.688631e-02	k: 1012	n:40000
KS ci ratio: 2.258827e-02	ci left: 4.246418e-01	ci right 4.343684e-01	k: 17180	n:40000
OR5M3   40000 perm   7 sec   (5578 perm/sec)   p_kst 4.295000e-01   p_cons 2.530000e-02   p_joint 6.335000e-02

Joint ci ratio: 7.026443e-02	ci left: 5.653727e-02	ci right 6.067416e-02	k: 2929	n:50000
Cons ci ratio: 1.121290e-01	ci left: 2.252056e-02	ci right 2.521511e-02	k: 1192	n:50000
KS ci ratio: 2.020704e-02	ci left: 4.250755e-01	ci right 4.337727e-01	k: 21471	n:50000
OR5M3   50000 perm   9 sec   (5428 perm/sec)   p_kst 4.294200e-01   p_cons 2.384000e-02   p_joint 5.858000e-02

Joint ci ratio: 5.518065e-02	ci left: 7.543849e-02	ci right 7.973581e-02	k: 4654	n:60000
Cons ci ratio: 1.026020e-01	ci left: 2.253011e-02	ci right 2.498292e-02	k: 1424	n:60000
KS ci ratio: 1.860372e-02	ci left: 4.213062e-01	ci right 4.292344e-01	k: 25516	n:60000
OR5M3   60000 perm   11 sec   (5330 perm/sec)   p_kst 4.252667e-01   p_cons 2.373333e-02   p_joint 7.756667e-02

Joint ci ratio: 4.533886e-02	ci left: 9.429394e-02	ci right 9.868243e-02	k: 6753	n:70000
Cons ci ratio: 9.468524e-02	ci left: 2.276719e-02	ci right 2.504393e-02	k: 1672	n:70000
KS ci ratio: 1.723418e-02	ci left: 4.213054e-01	ci right 4.286437e-01	k: 29748	n:70000
OR5M3   70000 perm   13 sec   (5224 perm/sec)   p_kst 4.249714e-01   p_cons 2.388571e-02   p_joint 9.647143e-02

Outputting figure to mutsig2_images.part000000000123/OR5M3.5_926_70000_0.42497_0.023886_0.096471.png
                gene_name: OR5M3
               theta_stop: 0.095 
                    nperm: 70000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.024 
      ci_cons_bounds_left: 0.023 
     ci_cons_bounds_right: 0.025 
                  p_joint: 0.096 
     ci_joint_bounds_left: 0.094 
    ci_joint_bounds_right: 0.099 

Current progress: 50 percent done.
OR5R1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.671727e-02	ci left: 5.227627e-01	ci right 5.424183e-01	k: 5326	n:10000
Cons ci ratio: 1.508193e-02	ci left: 8.643742e-01	ci right 8.776089e-01	k: 8711	n:10000
KS ci ratio: 5.310533e-02	ci left: 3.432297e-01	ci right 3.620562e-01	k: 3526	n:10000
OR5R1   10000 perm   1 sec   (7136 perm/sec)   p_kst 3.526000e-01   p_cons 8.711000e-01   p_joint 5.326000e-01

Outputting figure to mutsig2_images.part000000000123/OR5R1.5_977_10000_0.3526_0.8711_0.5326.png
                gene_name: OR5R1
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 51 percent done.
OR6B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.719268e-02	ci left: 8.313427e-01	ci right 8.458595e-01	k: 8387	n:10000
Cons ci ratio: 1.791163e-02	ci left: 8.197466e-01	ci right 8.346623e-01	k: 8273	n:10000
KS ci ratio: 3.823406e-02	ci left: 5.025508e-01	ci right 5.222420e-01	k: 5124	n:10000
OR6B1   10000 perm   1 sec   (7181 perm/sec)   p_kst 5.124000e-01   p_cons 8.273000e-01   p_joint 8.387000e-01

Outputting figure to mutsig2_images.part000000000123/OR6B1.5_940_10000_0.5124_0.8273_0.8387.png
                gene_name: OR6B1
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 53 percent done.
OR6C75
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.182352e-02	ci left: 5.930304e-01	ci right 6.123098e-01	k: 6027	n:10000
Cons ci ratio: 7.190577e-02	ci left: 2.207943e-01	ci right 2.373638e-01	k: 2290	n:10000
KS ci ratio: 1.329427e-02	ci left: 8.907739e-01	ci right 9.027938e-01	k: 8969	n:10000
OR6C75   10000 perm   1 sec   (7090 perm/sec)   p_kst 8.969000e-01   p_cons 2.290000e-01   p_joint 6.027000e-01

Outputting figure to mutsig2_images.part000000000123/OR6C75.5_942_10000_0.8969_0.229_0.6027.png
                gene_name: OR6C75
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 54 percent done.
OR6M1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.422056e-02	ci left: 2.099406e-01	ci right 2.262240e-01	k: 2180	n:10000
Cons ci ratio: 4.976527e-02	ci left: 3.732585e-01	ci right 3.924098e-01	k: 3828	n:10000
KS ci ratio: 9.584355e-02	ci left: 1.363893e-01	ci right 1.502192e-01	k: 1432	n:10000
OR6M1   10000 perm   1 sec   (7105 perm/sec)   p_kst 1.432000e-01   p_cons 3.828000e-01   p_joint 2.180000e-01

Outputting figure to mutsig2_images.part000000000123/OR6M1.5_945_10000_0.1432_0.3828_0.218.png
                gene_name: OR6M1
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 55 percent done.
OR6S1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.546661e-02	ci left: 4.165799e-01	ci right 4.360631e-01	k: 4263	n:10000
Cons ci ratio: 4.246508e-02	ci left: 4.501944e-01	ci right 4.698289e-01	k: 4600	n:10000
KS ci ratio: 5.053201e-02	ci left: 3.660957e-01	ci right 3.851768e-01	k: 3756	n:10000
OR6S1   10000 perm   2 sec   (6498 perm/sec)   p_kst 3.756000e-01   p_cons 4.600000e-01   p_joint 4.263000e-01

Outputting figure to mutsig2_images.part000000000123/OR6S1.5_1000_10000_0.3756_0.46_0.4263.png
                gene_name: OR6S1
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 57 percent done.
OR6T1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.607094e-02	ci left: 3.189980e-01	ci right 3.375022e-01	k: 3282	n:10000
Cons ci ratio: 3.303999e-02	ci left: 5.748680e-01	ci right 5.942827e-01	k: 5846	n:10000
KS ci ratio: 7.783900e-02	ci left: 1.943656e-01	ci right 2.102082e-01	k: 2022	n:10000
OR6T1   10000 perm   1 sec   (7091 perm/sec)   p_kst 2.022000e-01   p_cons 5.846000e-01   p_joint 3.282000e-01

Outputting figure to mutsig2_images.part000000000123/OR6T1.5_975_10000_0.2022_0.5846_0.3282.png
                gene_name: OR6T1
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 58 percent done.
OR8B12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.356810e-02	ci left: 2.666610e-01	ci right 2.842700e-01	k: 2754	n:10000
Cons ci ratio: 1.415757e-01	ci left: 6.613851e-02	ci right 7.631298e-02	k: 711	n:10000
KS ci ratio: 3.035478e-02	ci left: 6.155265e-01	ci right 6.346006e-01	k: 6251	n:10000
OR8B12   10000 perm   1 sec   (7102 perm/sec)   p_kst 6.251000e-01   p_cons 7.110000e-02   p_joint 2.754000e-01

Joint ci ratio: 5.720308e-02	ci left: 1.846823e-01	ci right 1.956079e-01	k: 3802	n:20000
Cons ci ratio: 1.009921e-01	ci left: 6.650160e-02	ci right 7.362401e-02	k: 1400	n:20000
KS ci ratio: 2.145137e-02	ci left: 6.186491e-01	ci right 6.321144e-01	k: 12508	n:20000
OR8B12   20000 perm   3 sec   (6223 perm/sec)   p_kst 6.254000e-01   p_cons 7.000000e-02   p_joint 1.901000e-01

Joint ci ratio: 5.358777e-02	ci left: 1.472953e-01	ci right 1.554390e-01	k: 4540	n:30000
Cons ci ratio: 8.645384e-02	ci left: 6.135404e-02	ci right 6.693073e-02	k: 1923	n:30000
KS ci ratio: 1.759758e-02	ci left: 6.176881e-01	ci right 6.286880e-01	k: 18696	n:30000
OR8B12   30000 perm   5 sec   (5871 perm/sec)   p_kst 6.232000e-01   p_cons 6.410000e-02   p_joint 1.513333e-01

Outputting figure to mutsig2_images.part000000000123/OR8B12.5_935_30000_0.6232_0.0641_0.15133.png
                gene_name: OR8B12
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.064 
      ci_cons_bounds_left: 0.061 
     ci_cons_bounds_right: 0.067 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 59 percent done.
OR5K3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.176015e-02	ci left: 1.792031e-01	ci right 1.945798e-01	k: 1868	n:10000
Cons ci ratio: 1.366775e-01	ci left: 7.078334e-02	ci right 8.126524e-02	k: 759	n:10000
KS ci ratio: 7.947409e-03	ci left: 9.566005e-01	ci right 9.643283e-01	k: 9606	n:10000
OR5K3   10000 perm   1 sec   (7211 perm/sec)   p_kst 9.606000e-01   p_cons 7.590000e-02   p_joint 1.868000e-01

Joint ci ratio: 4.868470e-02	ci left: 2.388039e-01	ci right 2.507704e-01	k: 4895	n:20000
Cons ci ratio: 9.706290e-02	ci left: 7.172876e-02	ci right 7.909525e-02	k: 1507	n:20000
KS ci ratio: 5.575790e-03	ci left: 9.583790e-01	ci right 9.637859e-01	k: 19223	n:20000
OR5K3   20000 perm   3 sec   (6204 perm/sec)   p_kst 9.611500e-01   p_cons 7.535000e-02   p_joint 2.447500e-01

Outputting figure to mutsig2_images.part000000000123/OR5K3.4_969_20000_0.96115_0.07535_0.24475.png
                gene_name: OR5K3
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.075 
      ci_cons_bounds_left: 0.072 
     ci_cons_bounds_right: 0.079 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 61 percent done.
OR6C65
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.722332e-02	ci left: 6.653172e-01	ci right 6.837810e-01	k: 6746	n:10000
Cons ci ratio: 4.988129e-02	ci left: 3.721640e-01	ci right 3.913049e-01	k: 3817	n:10000
KS ci ratio: 4.591556e-02	ci left: 4.117958e-01	ci right 4.312500e-01	k: 4215	n:10000
OR6C65   10000 perm   1 sec   (7122 perm/sec)   p_kst 4.215000e-01   p_cons 3.817000e-01   p_joint 6.746000e-01

Outputting figure to mutsig2_images.part000000000123/OR6C65.4_941_10000_0.4215_0.3817_0.6746.png
                gene_name: OR6C65
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.68 

Current progress: 62 percent done.
OR6K6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.737018e-02	ci left: 8.284934e-01	ci right 8.431104e-01	k: 8359	n:10000
Cons ci ratio: 2.661160e-02	ci left: 6.752890e-01	ci right 6.936034e-01	k: 6845	n:10000
KS ci ratio: 3.278220e-02	ci left: 5.786800e-01	ci right 5.980685e-01	k: 5884	n:10000
OR6K6   10000 perm   1 sec   (7552 perm/sec)   p_kst 5.884000e-01   p_cons 6.845000e-01   p_joint 8.359000e-01

Outputting figure to mutsig2_images.part000000000123/OR6K6.4_1036_10000_0.5884_0.6845_0.8359.png
                gene_name: OR6K6
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 64 percent done.
OR6V1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.938381e-02	ci left: 1.540423e-01	ci right 1.685555e-01	k: 1612	n:10000
Cons ci ratio: 1.969557e-01	ci left: 3.433772e-02	ci right 4.193438e-02	k: 380	n:10000
KS ci ratio: 2.365186e-02	ci left: 7.243132e-01	ci right 7.417508e-01	k: 7331	n:10000
OR6V1   10000 perm   1 sec   (7196 perm/sec)   p_kst 7.331000e-01   p_cons 3.800000e-02   p_joint 1.612000e-01

Joint ci ratio: 7.153150e-02	ci left: 1.258605e-01	ci right 1.352472e-01	k: 2610	n:20000
Cons ci ratio: 1.472962e-01	ci left: 3.167591e-02	ci right 3.676068e-02	k: 683	n:20000
KS ci ratio: 1.672465e-02	ci left: 7.269110e-01	ci right 7.392212e-01	k: 14662	n:20000
OR6V1   20000 perm   3 sec   (6355 perm/sec)   p_kst 7.331000e-01   p_cons 3.415000e-02   p_joint 1.305000e-01

Joint ci ratio: 6.930307e-02	ci left: 9.301715e-02	ci right 9.972792e-02	k: 2890	n:30000
Cons ci ratio: 1.199654e-01	ci left: 3.230143e-02	ci right 3.645605e-02	k: 1030	n:30000
KS ci ratio: 1.365918e-02	ci left: 7.279549e-01	ci right 7.380000e-01	k: 21990	n:30000
OR6V1   30000 perm   5 sec   (6026 perm/sec)   p_kst 7.330000e-01   p_cons 3.433333e-02   p_joint 9.633333e-02

Joint ci ratio: 5.316471e-02	ci left: 1.164599e-01	ci right 1.228454e-01	k: 4785	n:40000
Cons ci ratio: 1.035689e-01	ci left: 3.278154e-02	ci right 3.638643e-02	k: 1382	n:40000
KS ci ratio: 1.189799e-02	ci left: 7.263488e-01	ci right 7.350677e-01	k: 29229	n:40000
OR6V1   40000 perm   7 sec   (5814 perm/sec)   p_kst 7.307250e-01   p_cons 3.455000e-02   p_joint 1.196250e-01

Joint ci ratio: 4.669822e-02	ci left: 1.206281e-01	ci right 1.264157e-01	k: 6175	n:50000
Cons ci ratio: 9.213248e-02	ci left: 3.332795e-02	ci right 3.656633e-02	k: 1746	n:50000
KS ci ratio: 1.064096e-02	ci left: 7.268487e-01	ci right 7.346445e-01	k: 36538	n:50000
OR6V1   50000 perm   9 sec   (5649 perm/sec)   p_kst 7.307600e-01   p_cons 3.492000e-02   p_joint 1.235000e-01

Outputting figure to mutsig2_images.part000000000123/OR6V1.4_945_50000_0.73076_0.03492_0.1235.png
                gene_name: OR6V1
               theta_stop: 0.092 
                    nperm: 50000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.035 
      ci_cons_bounds_left: 0.033 
     ci_cons_bounds_right: 0.037 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 65 percent done.
OR7D2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.931451e-02	ci left: 6.318096e-01	ci right 6.507081e-01	k: 6413	n:10000
Cons ci ratio: 1.157215e-02	ci left: 9.144065e-01	ci right 9.251474e-01	k: 9199	n:10000
KS ci ratio: 4.729818e-02	ci left: 3.974490e-01	ci right 4.168051e-01	k: 4071	n:10000
OR7D2   10000 perm   1 sec   (7553 perm/sec)   p_kst 4.071000e-01   p_cons 9.199000e-01   p_joint 6.413000e-01

Outputting figure to mutsig2_images.part000000000123/OR7D2.4_943_10000_0.4071_0.9199_0.6413.png
                gene_name: OR7D2
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 66 percent done.
OR7D4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.393222e-02	ci left: 5.618315e-01	ci right 5.813268e-01	k: 5716	n:10000
KS ci ratio: 2.468708e-02	ci left: 7.070498e-01	ci right 7.248243e-01	k: 7160	n:10000
OR7D4   10000 perm   1 sec   (8191 perm/sec)   p_kst 7.160000e-01   p_cons 5.716000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000123/OR7D4.4_943_10000_0.716_0.5716_1.png
                gene_name: OR7D4
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
OR8B3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.607595e-02	ci left: 4.101016e-01	ci right 4.295451e-01	k: 4198	n:10000
Cons ci ratio: 1.152409e-01	ci left: 9.769325e-02	ci right 1.097387e-01	k: 1036	n:10000
KS ci ratio: 2.046065e-02	ci left: 7.777276e-01	ci right 7.939056e-01	k: 7859	n:10000
OR8B3   10000 perm   1 sec   (7592 perm/sec)   p_kst 7.859000e-01   p_cons 1.036000e-01   p_joint 4.198000e-01

Joint ci ratio: 3.594557e-02	ci left: 3.661422e-01	ci right 3.795948e-01	k: 7457	n:20000
Cons ci ratio: 8.101066e-02	ci left: 1.005386e-01	ci right 1.090767e-01	k: 2095	n:20000
KS ci ratio: 1.469529e-02	ci left: 7.747990e-01	ci right 7.863193e-01	k: 15612	n:20000
OR8B3   20000 perm   3 sec   (6678 perm/sec)   p_kst 7.806000e-01   p_cons 1.047500e-01   p_joint 3.728500e-01

Outputting figure to mutsig2_images.part000000000123/OR8B3.4_944_20000_0.7806_0.10475_0.37285.png
                gene_name: OR8B3
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.38 

Current progress: 69 percent done.
OR8D2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.143814e-01	ci left: 9.905732e-02	ci right 1.111738e-01	k: 1050	n:10000
Cons ci ratio: 1.623245e-01	ci left: 5.061180e-02	ci right 5.964956e-02	k: 550	n:10000
KS ci ratio: 3.749872e-02	ci left: 5.122545e-01	ci right 5.319326e-01	k: 5221	n:10000
OR8D2   10000 perm   1 sec   (7602 perm/sec)   p_kst 5.221000e-01   p_cons 5.500000e-02   p_joint 1.050000e-01

Joint ci ratio: 5.764331e-02	ci left: 1.823586e-01	ci right 1.932324e-01	k: 3755	n:20000
Cons ci ratio: 1.081378e-01	ci left: 5.830682e-02	ci right 6.502132e-02	k: 1232	n:20000
KS ci ratio: 2.649888e-02	ci left: 5.154996e-01	ci right 5.293938e-01	k: 10449	n:20000
OR8D2   20000 perm   3 sec   (6670 perm/sec)   p_kst 5.224500e-01   p_cons 6.160000e-02   p_joint 1.877500e-01

Joint ci ratio: 4.717405e-02	ci left: 1.826677e-01	ci right 1.915263e-01	k: 5612	n:30000
Cons ci ratio: 8.830750e-02	ci left: 5.890524e-02	ci right 6.438003e-02	k: 1848	n:30000
KS ci ratio: 2.164904e-02	ci left: 5.164957e-01	ci right 5.278333e-01	k: 15665	n:30000
OR8D2   30000 perm   5 sec   (6329 perm/sec)   p_kst 5.221667e-01   p_cons 6.160000e-02   p_joint 1.870667e-01

Outputting figure to mutsig2_images.part000000000123/OR8D2.4_939_30000_0.52217_0.0616_0.18707.png
                gene_name: OR8D2
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.062 
      ci_cons_bounds_left: 0.059 
     ci_cons_bounds_right: 0.064 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 70 percent done.
OR8K1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.164895e-02	ci left: 3.559523e-01	ci right 3.749262e-01	k: 3654	n:10000
Cons ci ratio: 6.971741e-02	ci left: 2.317548e-01	ci right 2.485968e-01	k: 2401	n:10000
KS ci ratio: 5.384612e-02	ci left: 3.369706e-01	ci right 3.557190e-01	k: 3463	n:10000
OR8K1   10000 perm   1 sec   (7592 perm/sec)   p_kst 3.463000e-01   p_cons 2.401000e-01   p_joint 3.654000e-01

Outputting figure to mutsig2_images.part000000000123/OR8K1.4_962_10000_0.3463_0.2401_0.3654.png
                gene_name: OR8K1
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 72 percent done.
OR5K4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.127937e-02	ci left: 4.642721e-01	ci right 4.839430e-01	k: 4741	n:10000
Cons ci ratio: 4.647540e-02	ci left: 4.059166e-01	ci right 4.253326e-01	k: 4156	n:10000
KS ci ratio: 5.186117e-02	ci left: 3.540633e-01	ci right 3.730162e-01	k: 3635	n:10000
OR5K4   10000 perm   1 sec   (7658 perm/sec)   p_kst 3.635000e-01   p_cons 4.156000e-01   p_joint 4.741000e-01

Outputting figure to mutsig2_images.part000000000123/OR5K4.3_968_10000_0.3635_0.4156_0.4741.png
                gene_name: OR5K4
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 73 percent done.
OR5P2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.652540e-02	ci left: 6.766995e-01	ci right 6.949921e-01	k: 6859	n:10000
Cons ci ratio: 4.059863e-02	ci left: 4.725626e-01	ci right 4.922477e-01	k: 4824	n:10000
KS ci ratio: 1.689324e-02	ci left: 8.361272e-01	ci right 8.504722e-01	k: 8434	n:10000
OR5P2   10000 perm   1 sec   (7352 perm/sec)   p_kst 8.434000e-01   p_cons 4.824000e-01   p_joint 6.859000e-01

Outputting figure to mutsig2_images.part000000000123/OR5P2.3_973_10000_0.8434_0.4824_0.6859.png
                gene_name: OR5P2
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.69 

Current progress: 74 percent done.
OR5V1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.130045e-02	ci left: 2.237558e-01	ci right 2.404006e-01	k: 2320	n:10000
KS ci ratio: 2.030862e-02	ci left: 7.802612e-01	ci right 7.963705e-01	k: 7884	n:10000
OR5V1   10000 perm   1 sec   (7638 perm/sec)   p_kst 7.884000e-01   p_cons 2.320000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000123/OR5V1.3_969_10000_0.7884_0.232_1.png
                gene_name: OR5V1
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
OR6B2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.706448e-02	ci left: 3.113568e-01	ci right 3.297478e-01	k: 3205	n:10000
Cons ci ratio: 8.222034e-02	ci left: 1.775304e-01	ci right 1.928534e-01	k: 1851	n:10000
KS ci ratio: 4.226904e-02	ci left: 4.524903e-01	ci right 4.721317e-01	k: 4623	n:10000
OR6B2   10000 perm   1 sec   (7391 perm/sec)   p_kst 4.623000e-01   p_cons 1.851000e-01   p_joint 3.205000e-01

Outputting figure to mutsig2_images.part000000000123/OR6B2.3_941_10000_0.4623_0.1851_0.3205.png
                gene_name: OR6B2
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 77 percent done.
OR6C6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.357589e-01	ci left: 2.372311e-02	ci right 3.015646e-02	k: 268	n:10000
Cons ci ratio: 3.428867e-01	ci left: 1.068957e-02	ci right 1.520079e-02	k: 128	n:10000
KS ci ratio: 1.527287e-01	ci left: 5.706232e-02	ci right 6.659491e-02	k: 617	n:10000
OR6C6   10000 perm   1 sec   (7545 perm/sec)   p_kst 6.170000e-02   p_cons 1.280000e-02   p_joint 2.680000e-02

Joint ci ratio: 1.908840e-01	ci left: 1.867638e-02	ci right 2.266469e-02	k: 412	n:20000
Cons ci ratio: 2.387411e-01	ci left: 1.171137e-02	ci right 1.493242e-02	k: 265	n:20000
KS ci ratio: 1.115012e-01	ci left: 5.494603e-02	ci right 6.148315e-02	k: 1163	n:20000
OR6C6   20000 perm   3 sec   (6665 perm/sec)   p_kst 5.815000e-02   p_cons 1.325000e-02   p_joint 2.060000e-02

Joint ci ratio: 1.635002e-01	ci left: 1.726117e-02	ci right 2.036634e-02	k: 563	n:30000
Cons ci ratio: 1.920271e-01	ci left: 1.238345e-02	ci right 1.504528e-02	k: 410	n:30000
KS ci ratio: 8.815518e-02	ci left: 5.910110e-02	ci right 6.458413e-02	k: 1854	n:30000
OR6C6   30000 perm   5 sec   (6300 perm/sec)   p_kst 6.180000e-02   p_cons 1.366667e-02   p_joint 1.876667e-02

Joint ci ratio: 1.443594e-01	ci left: 1.679201e-02	ci right 1.942861e-02	k: 723	n:40000
Cons ci ratio: 1.678608e-01	ci left: 1.232011e-02	ci right 1.460133e-02	k: 537	n:40000
KS ci ratio: 7.625183e-02	ci left: 5.960697e-02	ci right 6.435686e-02	k: 2478	n:40000
OR6C6   40000 perm   7 sec   (6072 perm/sec)   p_kst 6.195000e-02   p_cons 1.342500e-02   p_joint 1.807500e-02

Joint ci ratio: 1.508804e-01	ci left: 1.231422e-02	ci right 1.434286e-02	k: 665	n:50000
Cons ci ratio: 1.509954e-01	ci left: 1.229497e-02	ci right 1.432212e-02	k: 664	n:50000
KS ci ratio: 6.874448e-02	ci left: 5.895710e-02	ci right 6.317404e-02	k: 3052	n:50000
OR6C6   50000 perm   8 sec   (5918 perm/sec)   p_kst 6.104000e-02   p_cons 1.328000e-02   p_joint 1.330000e-02

Joint ci ratio: 1.092226e-01	ci left: 1.986759e-02	ci right 2.217907e-02	k: 1260	n:60000
Cons ci ratio: 1.306431e-01	ci left: 1.381673e-02	ci right 1.576395e-02	k: 886	n:60000
KS ci ratio: 6.277865e-02	ci left: 5.909793e-02	ci right 6.294467e-02	k: 3660	n:60000
OR6C6   60000 perm   10 sec   (5761 perm/sec)   p_kst 6.100000e-02   p_cons 1.476667e-02   p_joint 2.100000e-02

Joint ci ratio: 9.684190e-02	ci left: 2.176271e-02	ci right 2.399137e-02	k: 1600	n:70000
Cons ci ratio: 1.203535e-01	ci left: 1.402937e-02	ci right 1.583973e-02	k: 1044	n:70000
KS ci ratio: 5.829034e-02	ci left: 5.891404e-02	ci right 6.246534e-02	k: 4247	n:70000
OR6C6   70000 perm   13 sec   (5591 perm/sec)   p_kst 6.067143e-02   p_cons 1.491429e-02   p_joint 2.285714e-02

Joint ci ratio: 9.729406e-02	ci left: 1.891903e-02	ci right 2.086600e-02	k: 1590	n:80000
Cons ci ratio: 1.127380e-01	ci left: 1.404754e-02	ci right 1.573791e-02	k: 1190	n:80000
KS ci ratio: 5.434035e-02	ci left: 5.941295e-02	ci right 6.274397e-02	k: 4885	n:80000
OR6C6   80000 perm   15 sec   (5463 perm/sec)   p_kst 6.106250e-02   p_cons 1.487500e-02   p_joint 1.987500e-02

Joint ci ratio: 9.603035e-02	ci left: 1.730413e-02	ci right 1.906045e-02	k: 1635	n:90000
Cons ci ratio: 1.063258e-01	ci left: 1.408613e-02	ci right 1.567869e-02	k: 1338	n:90000
KS ci ratio: 5.117685e-02	ci left: 5.963164e-02	ci right 6.277450e-02	k: 5507	n:90000
OR6C6   90000 perm   17 sec   (5345 perm/sec)   p_kst 6.118889e-02   p_cons 1.486667e-02   p_joint 1.816667e-02

Joint ci ratio: 8.342867e-02	ci left: 2.069808e-02	ci right 2.250981e-02	k: 2159	n:100000
Cons ci ratio: 1.012424e-01	ci left: 1.402168e-02	ci right 1.552665e-02	k: 1476	n:100000
KS ci ratio: 4.865659e-02	ci left: 5.946507e-02	ci right 6.244045e-02	k: 6094	n:100000
OR6C6   100000 perm   19 sec   (5239 perm/sec)   p_kst 6.094000e-02   p_cons 1.476000e-02   p_joint 2.159000e-02

Joint ci ratio: 8.043291e-02	ci left: 2.028553e-02	ci right 2.199439e-02	k: 2324	n:110000
Cons ci ratio: 9.694661e-02	ci left: 1.393495e-02	ci right 1.536353e-02	k: 1610	n:110000
KS ci ratio: 4.646796e-02	ci left: 5.934993e-02	ci right 6.218237e-02	k: 6683	n:110000
OR6C6   110000 perm   21 sec   (5138 perm/sec)   p_kst 6.075455e-02   p_cons 1.463636e-02   p_joint 2.112727e-02

Outputting figure to mutsig2_images.part000000000123/OR6C6.3_947_110000_0.060755_0.014636_0.021127.png
                gene_name: OR6C6
               theta_stop: 0.097 
                    nperm: 110000 
                     p_ks: 0.061 
        ci_ks_bounds_left: 0.059 
       ci_ks_bounds_right: 0.062 
                   p_cons: 0.015 
      ci_cons_bounds_left: 0.014 
     ci_cons_bounds_right: 0.015 
                  p_joint: 0.021 
     ci_joint_bounds_left: 0.020 
    ci_joint_bounds_right: 0.022 

Current progress: 78 percent done.
OR6C70
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.158161e-02	ci left: 2.223737e-01	ci right 2.389835e-01	k: 2306	n:10000
Cons ci ratio: 1.392727e-01	ci left: 6.826660e-02	ci right 7.858355e-02	k: 733	n:10000
KS ci ratio: 4.966014e-02	ci left: 3.742535e-01	ci right 3.934142e-01	k: 3838	n:10000
OR6C70   10000 perm   1 sec   (7716 perm/sec)   p_kst 3.838000e-01   p_cons 7.330000e-02   p_joint 2.306000e-01

Joint ci ratio: 5.933193e-02	ci left: 1.738079e-01	ci right 1.844856e-01	k: 3582	n:20000
Cons ci ratio: 9.906657e-02	ci left: 6.899234e-02	ci right 7.623250e-02	k: 1451	n:20000
KS ci ratio: 3.539479e-02	ci left: 3.733655e-01	ci right 3.868694e-01	k: 7602	n:20000
OR6C70   20000 perm   3 sec   (6704 perm/sec)   p_kst 3.801000e-01   p_cons 7.255000e-02   p_joint 1.791000e-01

Outputting figure to mutsig2_images.part000000000123/OR6C70.3_941_20000_0.3801_0.07255_0.1791.png
                gene_name: OR6C70
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.073 
      ci_cons_bounds_left: 0.069 
     ci_cons_bounds_right: 0.076 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 80 percent done.
OR6N2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.859839e-02	ci left: 6.431744e-01	ci right 6.619367e-01	k: 6526	n:10000
Cons ci ratio: 6.204299e-02	ci left: 2.763642e-01	ci right 2.941611e-01	k: 2852	n:10000
KS ci ratio: 1.026480e-02	ci left: 9.309212e-01	ci right 9.406231e-01	k: 9359	n:10000
OR6N2   10000 perm   1 sec   (7386 perm/sec)   p_kst 9.359000e-01   p_cons 2.852000e-01   p_joint 6.526000e-01

Outputting figure to mutsig2_images.part000000000123/OR6N2.3_957_10000_0.9359_0.2852_0.6526.png
                gene_name: OR6N2
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 81 percent done.
OR6X1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.242237e-02	ci left: 4.506935e-01	ci right 4.703295e-01	k: 4605	n:10000
Cons ci ratio: 1.718632e-02	ci left: 8.314445e-01	ci right 8.459577e-01	k: 8388	n:10000
KS ci ratio: 6.109811e-02	ci left: 2.826046e-01	ci right 3.005169e-01	k: 2915	n:10000
OR6X1   10000 perm   1 sec   (7446 perm/sec)   p_kst 2.915000e-01   p_cons 8.388000e-01   p_joint 4.605000e-01

Outputting figure to mutsig2_images.part000000000123/OR6X1.3_941_10000_0.2915_0.8388_0.4605.png
                gene_name: OR6X1
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 82 percent done.
OR7A10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.407139e-02	ci left: 8.795059e-01	ci right 8.920683e-01	k: 8859	n:10000
KS ci ratio: 1.672674e-02	ci left: 8.387749e-01	ci right 8.530230e-01	k: 8460	n:10000
OR7A10   10000 perm   1 sec   (7414 perm/sec)   p_kst 8.460000e-01   p_cons 8.859000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000123/OR7A10.3_934_10000_0.846_0.8859_1.png
                gene_name: OR7A10
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
OR7C2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.663683e-02	ci left: 8.402009e-01	ci right 8.543961e-01	k: 8474	n:10000
KS ci ratio: 1.485965e-02	ci left: 8.677455e-01	ci right 8.808356e-01	k: 8744	n:10000
OR7C2   10000 perm   1 sec   (7493 perm/sec)   p_kst 8.744000e-01   p_cons 8.474000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000123/OR7C2.3_963_10000_0.8744_0.8474_1.png
                gene_name: OR7C2
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 85 percent done.
OR7E24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.911566e-02	ci left: 1.892437e-01	ci right 2.049332e-01	k: 1970	n:10000
Cons ci ratio: 2.305278e-01	ci left: 2.485465e-02	ci right 3.142409e-02	k: 280	n:10000
KS ci ratio: 2.255332e-02	ci left: 7.427054e-01	ci right 7.597480e-01	k: 7513	n:10000
OR7E24   10000 perm   1 sec   (7625 perm/sec)   p_kst 7.513000e-01   p_cons 2.800000e-02   p_joint 1.970000e-01

Joint ci ratio: 5.938241e-02	ci left: 1.735608e-01	ci right 1.842327e-01	k: 3577	n:20000
Cons ci ratio: 1.596804e-01	ci left: 2.691024e-02	ci right 3.162794e-02	k: 584	n:20000
KS ci ratio: 1.618668e-02	ci left: 7.396044e-01	ci right 7.517241e-01	k: 14914	n:20000
OR7E24   20000 perm   3 sec   (6650 perm/sec)   p_kst 7.457000e-01   p_cons 2.920000e-02   p_joint 1.788500e-01

Joint ci ratio: 5.094307e-02	ci left: 1.606178e-01	ci right 1.690473e-01	k: 4944	n:30000
Cons ci ratio: 1.311124e-01	ci left: 2.703337e-02	ci right 3.085858e-02	k: 867	n:30000
KS ci ratio: 1.327333e-02	ci left: 7.390885e-01	ci right 7.489976e-01	k: 22322	n:30000
OR7E24   30000 perm   5 sec   (6294 perm/sec)   p_kst 7.440667e-01   p_cons 2.890000e-02   p_joint 1.648000e-01

Joint ci ratio: 5.930314e-02	ci left: 9.554714e-02	ci right 1.014113e-01	k: 3938	n:40000
Cons ci ratio: 1.203188e-01	ci left: 2.429262e-02	ci right 2.742673e-02	k: 1033	n:40000
KS ci ratio: 1.149254e-02	ci left: 7.398438e-01	ci right 7.484207e-01	k: 29766	n:40000
OR7E24   40000 perm   7 sec   (6066 perm/sec)   p_kst 7.441500e-01   p_cons 2.582500e-02   p_joint 9.845000e-02

Joint ci ratio: 5.758398e-02	ci left: 8.237230e-02	ci right 8.727602e-02	k: 4240	n:50000
Cons ci ratio: 1.066674e-01	ci left: 2.489541e-02	ci right 2.771995e-02	k: 1314	n:50000
KS ci ratio: 1.028222e-02	ci left: 7.401908e-01	ci right 7.478609e-01	k: 37202	n:50000
OR7E24   50000 perm   8 sec   (5898 perm/sec)   p_kst 7.440400e-01   p_cons 2.628000e-02   p_joint 8.480000e-02

Joint ci ratio: 4.303190e-02	ci left: 1.188793e-01	ci right 1.241240e-01	k: 7289	n:60000
Cons ci ratio: 9.276627e-02	ci left: 2.755774e-02	ci right 3.025475e-02	k: 1733	n:60000
KS ci ratio: 9.375015e-03	ci left: 7.409901e-01	ci right 7.479862e-01	k: 44670	n:60000
OR7E24   60000 perm   10 sec   (5759 perm/sec)   p_kst 7.445000e-01   p_cons 2.888333e-02   p_joint 1.214833e-01

Outputting figure to mutsig2_images.part000000000123/OR7E24.3_1024_60000_0.7445_0.028883_0.12148.png
                gene_name: OR7E24
               theta_stop: 0.093 
                    nperm: 60000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.029 
      ci_cons_bounds_left: 0.028 
     ci_cons_bounds_right: 0.030 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 86 percent done.
OR8D1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.969783e-02	ci left: 6.257775e-01	ci right 6.447437e-01	k: 6353	n:10000
Cons ci ratio: 2.549620e-02	ci left: 6.936335e-01	ci right 7.116483e-01	k: 7027	n:10000
KS ci ratio: 4.603814e-02	ci left: 4.105002e-01	ci right 4.299463e-01	k: 4202	n:10000
OR8D1   10000 perm   1 sec   (8292 perm/sec)   p_kst 4.202000e-01   p_cons 7.027000e-01   p_joint 6.353000e-01

Outputting figure to mutsig2_images.part000000000123/OR8D1.3_930_10000_0.4202_0.7027_0.6353.png
                gene_name: OR8D1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.64 

Current progress: 88 percent done.
OR8G2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.287024e-02	ci left: 5.773758e-01	ci right 5.967734e-01	k: 5871	n:10000
Cons ci ratio: 5.488470e-02	ci left: 3.284292e-01	ci right 3.470654e-01	k: 3377	n:10000
KS ci ratio: 3.713222e-02	ci left: 5.171578e-01	ci right 5.368265e-01	k: 5270	n:10000
OR8G2   10000 perm   1 sec   (7396 perm/sec)   p_kst 5.270000e-01   p_cons 3.377000e-01   p_joint 5.871000e-01

Outputting figure to mutsig2_images.part000000000123/OR8G2.3_917_10000_0.527_0.3377_0.5871.png
                gene_name: OR8G2
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 89 percent done.
OR8S1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.458116e-02	ci left: 8.719362e-01	ci right 8.848425e-01	k: 8785	n:10000
Cons ci ratio: 1.967418e-02	ci left: 7.908060e-01	ci right 8.066196e-01	k: 7988	n:10000
KS ci ratio: 1.968641e-02	ci left: 7.906032e-01	ci right 8.064225e-01	k: 7986	n:10000
OR8S1   10000 perm   1 sec   (7649 perm/sec)   p_kst 7.986000e-01   p_cons 7.988000e-01   p_joint 8.785000e-01

Outputting figure to mutsig2_images.part000000000123/OR8S1.3_1087_10000_0.7986_0.7988_0.8785.png
                gene_name: OR8S1
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 91 percent done.
OR9G4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.670107e-02	ci left: 8.391823e-01	ci right 8.534153e-01	k: 8464	n:10000
Cons ci ratio: 4.781136e-02	ci left: 3.922704e-01	ci right 4.115868e-01	k: 4019	n:10000
KS ci ratio: 1.990641e-02	ci left: 7.869522e-01	ci right 8.028756e-01	k: 7950	n:10000
OR9G4   10000 perm   1 sec   (7379 perm/sec)   p_kst 7.950000e-01   p_cons 4.019000e-01   p_joint 8.464000e-01

Outputting figure to mutsig2_images.part000000000123/OR9G4.3_987_10000_0.795_0.4019_0.8464.png
                gene_name: OR9G4
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 92 percent done.
OR5P3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.268989e-02	ci left: 8.992899e-01	ci right 9.108729e-01	k: 9052	n:10000
Cons ci ratio: 3.892077e-02	ci left: 4.936506e-01	ci right 5.133474e-01	k: 5035	n:10000
KS ci ratio: 5.823758e-02	ci left: 3.026276e-01	ci right 3.208822e-01	k: 3117	n:10000
OR5P3   10000 perm   1 sec   (8291 perm/sec)   p_kst 3.117000e-01   p_cons 5.035000e-01   p_joint 9.052000e-01

Outputting figure to mutsig2_images.part000000000123/OR5P3.2_939_10000_0.3117_0.5035_0.9052.png
                gene_name: OR5P3
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 93 percent done.
OR6A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.126343e-02	ci left: 9.184254e-01	ci right 9.289262e-01	k: 9238	n:10000
Cons ci ratio: 1.251928e-02	ci left: 9.016521e-01	ci right 9.131093e-01	k: 9075	n:10000
KS ci ratio: 2.774561e-02	ci left: 6.568600e-01	ci right 6.754431e-01	k: 6662	n:10000
OR6A2   10000 perm   1 sec   (7670 perm/sec)   p_kst 6.662000e-01   p_cons 9.075000e-01   p_joint 9.238000e-01

Outputting figure to mutsig2_images.part000000000123/OR6A2.2_988_10000_0.6662_0.9075_0.9238.png
                gene_name: OR6A2
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 95 percent done.
OR6C1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.762478e-02	ci left: 2.429207e-01	ci right 2.600243e-01	k: 2514	n:10000
Cons ci ratio: 8.043957e-02	ci left: 1.841239e-01	ci right 1.996560e-01	k: 1918	n:10000
KS ci ratio: 2.780176e-02	ci left: 6.559541e-01	ci right 6.745495e-01	k: 6653	n:10000
OR6C1   10000 perm   1 sec   (7974 perm/sec)   p_kst 6.653000e-01   p_cons 1.918000e-01   p_joint 2.514000e-01

Outputting figure to mutsig2_images.part000000000123/OR6C1.2_942_10000_0.6653_0.1918_0.2514.png
                gene_name: OR6C1
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 96 percent done.
OR6C4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.639181e-02	ci left: 8.440725e-01	ci right 8.581223e-01	k: 8512	n:10000
KS ci ratio: 3.092077e-02	ci left: 6.067866e-01	ci right 6.259455e-01	k: 6164	n:10000
OR6C4   10000 perm   1 sec   (7585 perm/sec)   p_kst 6.164000e-01   p_cons 8.512000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000123/OR6C4.2_932_10000_0.6164_0.8512_1.png
                gene_name: OR6C4
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
OR6Q1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.231530e-02	ci left: 2.188203e-01	ci right 2.353390e-01	k: 2270	n:10000
Cons ci ratio: 1.257205e-01	ci left: 8.300372e-02	ci right 9.423727e-02	k: 885	n:10000
KS ci ratio: 7.072525e-02	ci left: 2.266191e-01	ci right 2.433355e-01	k: 2349	n:10000
OR6Q1   10000 perm   1 sec   (8145 perm/sec)   p_kst 2.349000e-01   p_cons 8.850000e-02   p_joint 2.270000e-01

Joint ci ratio: 7.340230e-02	ci left: 1.202003e-01	ci right 1.294091e-01	k: 2495	n:20000
Cons ci ratio: 8.865284e-02	ci left: 8.508867e-02	ci right 9.303127e-02	k: 1780	n:20000
KS ci ratio: 5.010834e-02	ci left: 2.283942e-01	ci right 2.401831e-01	k: 4685	n:20000
OR6Q1   20000 perm   3 sec   (6889 perm/sec)   p_kst 2.342500e-01   p_cons 8.900000e-02   p_joint 1.247500e-01

Outputting figure to mutsig2_images.part000000000123/OR6Q1.2_957_20000_0.23425_0.089_0.12475.png
                gene_name: OR6Q1
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.089 
      ci_cons_bounds_left: 0.085 
     ci_cons_bounds_right: 0.093 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 99 percent done.
OR9A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.855426e-02	ci left: 6.438786e-01	ci right 6.626321e-01	k: 6533	n:10000
Cons ci ratio: 4.645628e-02	ci left: 4.061158e-01	ci right 4.255332e-01	k: 4158	n:10000
KS ci ratio: 2.321706e-02	ci left: 7.315870e-01	ci right 7.488729e-01	k: 7403	n:10000
OR9A4   10000 perm   1 sec   (7870 perm/sec)   p_kst 7.403000e-01   p_cons 4.158000e-01   p_joint 6.533000e-01

Outputting figure to mutsig2_images.part000000000123/OR9A4.2_949_10000_0.7403_0.4158_0.6533.png
                gene_name: OR9A4
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000123
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 123 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1724>
Subject: Job 8004350: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1724>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000124> was used as the working directory.
Started at Sun Nov 11 15:11:13 2012
Results reported at Sun Nov 11 15:22:47 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000124.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000124.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 124  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000124.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    681.37 sec.
    Max Memory :      4762 MB
    Max Swap   :      7099 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
124
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 124
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 124: processing genes 11129 - 11218
Calculating significance of each gene.
Using projection method.
11129	OR9I1	1.411243e-01
11130	OR9K2	4.487015e-01
11131	OR9Q1	1.789348e-01
11132	OR9Q2	5.021536e-01
11133	ORAI1	4.183547e-01
11134	ORAI2	1
11135	ORAI3	6.832455e-01
11136	ORAOV1	3.595458e-01
11137	ORC1L	7.458802e-01
11138	ORC2L	9.024156e-01
11139	ORC3L	7.064974e-01
11140	ORC4L	1
11141	ORC5L	1.886332e-01
11142	ORC6L	1
11143	ORM1	4.822135e-01
11144	ORM2	1
11145	ORMDL1	1
11146	ORMDL2	1.855997e-01
11147	ORMDL3	1
11148	OS9	2.524988e-01
11149	OSBP	8.201963e-01
11150	OSBP2	5.105636e-01
11151	OSBPL10	5.442296e-01
11152	OSBPL11	5.374638e-01
11153	OSBPL1A	1
11154	OSBPL2	4.909699e-01
11155	OSBPL3	8.742793e-01
11156	OSBPL5	7.503942e-01
11157	OSBPL6	9.505424e-01
11158	OSBPL7	6.336127e-01
11159	OSBPL8	5.213482e-01
11160	OSBPL9	9.592535e-01
11161	OSCAR	1
11162	OSCP1	7.657051e-01
11163	OSGEP	6.811103e-01
11164	OSGEPL1	1
11165	OSGIN1	3.878485e-01
11166	OSGIN2	5.513157e-01
11167	OSM	1
11168	OSMR	1
11169	OSR1	1
11170	OSR2	3.586861e-01
11171	OSTBETA	1
11172	OSTC	3.795940e-01
11173	OSTF1	1
11174	OSTM1	1.949308e-01
11175	OSTN	5.035316e-02
11176	OSTalpha	1
11177	OTC	2.673594e-01
11178	OTOA	1
11179	OTOF	2.845232e-01
11180	OTOL1	2.519159e-02
11181	OTOP1	2.738738e-01
11182	OTOP2	4.197613e-01
11183	OTOP3	1
11184	OTOR	1
11185	OTOS	1
11186	OTP	1
11187	OTUB1	3.341971e-01
11188	OTUB2	1
11189	OTUD3	1
11190	OTUD4	5.249867e-01
11191	OTUD5	6.260814e-01
11192	OTUD6A	1.631232e-01
11193	OTUD6B	2.468864e-01
11194	OTUD7A	5.170564e-01
11195	OTUD7B	5.711674e-01
11196	OTX1	1
11197	OTX2	6.154702e-01
11198	OVCA2	1
11199	OVCH1	9.160276e-01
11200	OVCH2	8.399400e-01
11201	OVGP1	2.395943e-01
11202	OVOL1	1
11203	OVOL2	1.705361e-01
11204	OXA1L	4.632338e-01
11205	OXCT1	2.939429e-01
11206	OXCT2	1
11207	OXER1	1
11208	OXGR1	2.364440e-01
11209	OXNAD1	3.085843e-01
11210	OXR1	6.899720e-01
11211	OXSM	7.824321e-01
11212	OXSR1	1.856342e-01
11213	OXT	1
11214	OXTR	7.617658e-01
11215	P2RX1	1
11216	P2RX2	1.795694e-01
11217	P2RX3	4.412215e-02
11218	P2RX4	7.022689e-01
Done

Running MutSig 2:
Scatter job 124: processing genes 11129 - 11218
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
OTOF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.505088e-02	ci left: 4.210658e-01	ci right 4.405745e-01	k: 4308	n:10000
Cons ci ratio: 1.763529e-02	ci left: 8.242208e-01	ci right 8.389855e-01	k: 8317	n:10000
KS ci ratio: 7.830018e-02	ci left: 1.924939e-01	ci right 2.082810e-01	k: 2003	n:10000
OTOF   10000 perm   3 sec   (3875 perm/sec)   p_kst 2.003000e-01   p_cons 8.317000e-01   p_joint 4.308000e-01

Outputting figure to mutsig2_images.part000000000124/OTOF.13_6507_10000_0.2003_0.8317_0.4308.png
                gene_name: OTOF
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 2 percent done.
OSBPL6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.890240e-02	ci left: 3.815183e-01	ci right 4.007452e-01	k: 3911	n:10000
Cons ci ratio: 7.150104e-02	ci left: 2.227686e-01	ci right 2.393884e-01	k: 2310	n:10000
KS ci ratio: 3.807373e-02	ci left: 5.046513e-01	ci right 5.243403e-01	k: 5145	n:10000
OSBPL6   10000 perm   2 sec   (5057 perm/sec)   p_kst 5.145000e-01   p_cons 2.310000e-01   p_joint 3.911000e-01

Outputting figure to mutsig2_images.part000000000124/OSBPL6.6_3019_10000_0.5145_0.231_0.3911.png
                gene_name: OSBPL6
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 4 percent done.
OSR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.975980e-02	ci left: 7.893861e-01	ci right 8.052403e-01	k: 7974	n:10000
KS ci ratio: 1.938620e-02	ci left: 7.955742e-01	ci right 8.112487e-01	k: 8035	n:10000
OSR2   10000 perm   2 sec   (6552 perm/sec)   p_kst 8.035000e-01   p_cons 7.974000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000124/OSR2.6_951_10000_0.8035_0.7974_1.png
                gene_name: OSR2
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 7 percent done.
OVCH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.972249e-01	ci left: 3.424249e-02	ci right 4.182967e-02	k: 379	n:10000
Cons ci ratio: 2.597904e-02	ci left: 6.856687e-01	ci right 7.038177e-01	k: 6948	n:10000
KS ci ratio: 5.644158e-01	ci left: 3.455366e-03	ci right 6.245157e-03	k: 47	n:10000
OVCH1   10000 perm   2 sec   (4979 perm/sec)   p_kst 4.700000e-03   p_cons 6.948000e-01   p_joint 3.790000e-02

Joint ci ratio: 2.126892e-01	ci left: 1.492218e-02	ci right 1.852030e-02	k: 333	n:20000
Cons ci ratio: 1.756842e-02	ci left: 7.070776e-01	ci right 7.196603e-01	k: 14268	n:20000
KS ci ratio: 4.055288e-01	ci left: 3.709812e-03	ci right 5.638552e-03	k: 92	n:20000
OVCH1   20000 perm   4 sec   (4582 perm/sec)   p_kst 4.600000e-03   p_cons 7.134000e-01   p_joint 1.665000e-02

Joint ci ratio: 1.959307e-01	ci left: 1.187572e-02	ci right 1.448649e-02	k: 394	n:30000
Cons ci ratio: 1.438209e-02	ci left: 7.071739e-01	ci right 7.174516e-01	k: 21370	n:30000
KS ci ratio: 3.281742e-01	ci left: 3.957669e-03	ci right 5.540593e-03	k: 141	n:30000
OVCH1   30000 perm   7 sec   (4415 perm/sec)   p_kst 4.700000e-03   p_cons 7.123333e-01   p_joint 1.313333e-02

Joint ci ratio: 1.950151e-01	ci left: 9.024339e-03	ci right 1.099777e-02	k: 399	n:40000
Cons ci ratio: 1.294111e-02	ci left: 6.918673e-01	ci right 7.009042e-01	k: 27856	n:40000
KS ci ratio: 2.982502e-01	ci left: 3.659335e-03	ci right 4.964242e-03	k: 171	n:40000
OVCH1   40000 perm   9 sec   (4292 perm/sec)   p_kst 4.275000e-03   p_cons 6.964000e-01   p_joint 9.975000e-03

Joint ci ratio: 1.576127e-01	ci left: 1.125617e-02	ci right 1.320107e-02	k: 610	n:50000
Cons ci ratio: 1.156779e-02	ci left: 6.926093e-01	ci right 7.006879e-01	k: 34833	n:50000
KS ci ratio: 2.649139e-01	ci left: 3.782748e-03	ci right 4.955943e-03	k: 217	n:50000
OVCH1   50000 perm   12 sec   (4196 perm/sec)   p_kst 4.340000e-03   p_cons 6.966600e-01   p_joint 1.220000e-02

Joint ci ratio: 1.167790e-01	ci left: 1.735585e-02	ci right 1.952442e-02	k: 1105	n:60000
Cons ci ratio: 1.054352e-02	ci left: 6.936228e-01	ci right 7.009914e-01	k: 41839	n:60000
KS ci ratio: 2.354110e-01	ci left: 4.058617e-03	ci right 5.156815e-03	k: 275	n:60000
OVCH1   60000 perm   15 sec   (4092 perm/sec)   p_kst 4.583333e-03   p_cons 6.973167e-01   p_joint 1.841667e-02

Joint ci ratio: 1.256460e-01	ci left: 1.285194e-02	ci right 1.458871e-02	k: 959	n:70000
Cons ci ratio: 9.787904e-03	ci left: 6.927492e-01	ci right 6.995774e-01	k: 48732	n:70000
KS ci ratio: 2.156066e-01	ci left: 4.193291e-03	ci right 5.219858e-03	k: 328	n:70000
OVCH1   70000 perm   17 sec   (4034 perm/sec)   p_kst 4.685714e-03   p_cons 6.961714e-01   p_joint 1.370000e-02

Joint ci ratio: 1.197727e-01	ci left: 1.242057e-02	ci right 1.401502e-02	k: 1056	n:80000
Cons ci ratio: 9.157572e-03	ci left: 6.928870e-01	ci right 6.992738e-01	k: 55687	n:80000
KS ci ratio: 2.030426e-01	ci left: 4.166622e-03	ci right 5.119849e-03	k: 370	n:80000
OVCH1   80000 perm   20 sec   (3982 perm/sec)   p_kst 4.625000e-03   p_cons 6.960875e-01   p_joint 1.320000e-02

Joint ci ratio: 1.123083e-01	ci left: 1.260495e-02	ci right 1.411554e-02	k: 1201	n:90000
Cons ci ratio: 8.645838e-03	ci left: 6.924816e-01	ci right 6.985058e-01	k: 62595	n:90000
KS ci ratio: 1.877108e-01	ci left: 4.369511e-03	ci right 5.285076e-03	k: 433	n:90000
OVCH1   90000 perm   23 sec   (3921 perm/sec)   p_kst 4.811111e-03   p_cons 6.955000e-01   p_joint 1.334444e-02

Joint ci ratio: 9.974501e-02	ci left: 1.445078e-02	ci right 1.597753e-02	k: 1520	n:100000
Cons ci ratio: 8.204879e-03	ci left: 6.924967e-01	ci right 6.982119e-01	k: 69536	n:100000
KS ci ratio: 1.770157e-01	ci left: 4.447941e-03	ci right 5.321157e-03	k: 487	n:100000
OVCH1   100000 perm   26 sec   (3866 perm/sec)   p_kst 4.870000e-03   p_cons 6.953600e-01   p_joint 1.520000e-02

Joint ci ratio: 9.160994e-02	ci left: 1.562213e-02	ci right 1.713080e-02	k: 1800	n:110000
Cons ci ratio: 7.823821e-03	ci left: 6.925885e-01	ci right 6.980375e-01	k: 76485	n:110000
KS ci ratio: 1.700237e-01	ci left: 4.400117e-03	ci right 5.226325e-03	k: 528	n:110000
OVCH1   110000 perm   29 sec   (3795 perm/sec)   p_kst 4.800000e-03   p_cons 6.953182e-01   p_joint 1.636364e-02

Joint ci ratio: 9.493734e-02	ci left: 1.334285e-02	ci right 1.468079e-02	k: 1680	n:120000
Cons ci ratio: 7.493273e-03	ci left: 6.925616e-01	ci right 6.977790e-01	k: 83421	n:120000
KS ci ratio: 1.636555e-01	ci left: 4.368823e-03	ci right 5.155404e-03	k: 570	n:120000
OVCH1   120000 perm   32 sec   (3749 perm/sec)   p_kst 4.750000e-03   p_cons 6.951750e-01   p_joint 1.400000e-02

Joint ci ratio: 9.296509e-02	ci left: 1.286467e-02	ci right 1.412640e-02	k: 1753	n:130000
Cons ci ratio: 7.195224e-03	ci left: 6.929054e-01	ci right 6.979166e-01	k: 90404	n:130000
KS ci ratio: 1.573097e-01	ci left: 4.379784e-03	ci right 5.134876e-03	k: 617	n:130000
OVCH1   130000 perm   35 sec   (3700 perm/sec)   p_kst 4.746154e-03   p_cons 6.954154e-01   p_joint 1.348462e-02

Joint ci ratio: 9.169592e-02	ci left: 1.229449e-02	ci right 1.348295e-02	k: 1803	n:140000
Cons ci ratio: 6.933044e-03	ci left: 6.930245e-01	ci right 6.978531e-01	k: 97362	n:140000
KS ci ratio: 1.504043e-01	ci left: 4.465298e-03	ci right 5.198299e-03	k: 675	n:140000
OVCH1   140000 perm   38 sec   (3656 perm/sec)   p_kst 4.821429e-03   p_cons 6.954429e-01   p_joint 1.287857e-02

Joint ci ratio: 8.010612e-02	ci left: 1.508348e-02	ci right 1.634867e-02	k: 2356	n:150000
Cons ci ratio: 6.420123e-03	ci left: 7.107902e-01	ci right 7.153749e-01	k: 106963	n:150000
KS ci ratio: 1.388344e-01	ci left: 4.919506e-03	ci right 5.659814e-03	k: 792	n:150000
OVCH1   150000 perm   42 sec   (3607 perm/sec)   p_kst 5.280000e-03   p_cons 7.130867e-01   p_joint 1.570667e-02

Joint ci ratio: 8.095161e-02	ci left: 1.385870e-02	ci right 1.503399e-02	k: 2310	n:160000
Cons ci ratio: 6.220138e-03	ci left: 7.106074e-01	ci right 7.150474e-01	k: 114053	n:160000
KS ci ratio: 1.357114e-01	ci left: 4.835331e-03	ci right 5.545281e-03	k: 829	n:160000
OVCH1   160000 perm   45 sec   (3557 perm/sec)   p_kst 5.181250e-03   p_cons 7.128313e-01   p_joint 1.443750e-02

Joint ci ratio: 7.630206e-02	ci left: 1.470455e-02	ci right 1.587677e-02	k: 2598	n:170000
Cons ci ratio: 6.033235e-03	ci left: 7.107547e-01	ci right 7.150616e-01	k: 121195	n:170000
KS ci ratio: 1.314255e-01	ci left: 4.863624e-03	ci right 5.553416e-03	k: 884	n:170000
OVCH1   170000 perm   48 sec   (3517 perm/sec)   p_kst 5.200000e-03   p_cons 7.129118e-01   p_joint 1.528235e-02

Joint ci ratio: 6.728860e-02	ci left: 1.788248e-02	ci right 1.913310e-02	k: 3330	n:180000
Cons ci ratio: 5.859123e-03	ci left: 7.111045e-01	ci right 7.152887e-01	k: 128376	n:180000
KS ci ratio: 1.277267e-01	ci left: 4.872949e-03	ci right 5.543139e-03	k: 936	n:180000
OVCH1   180000 perm   52 sec   (3465 perm/sec)   p_kst 5.200000e-03   p_cons 7.132000e-01   p_joint 1.850000e-02

Joint ci ratio: 6.879779e-02	ci left: 1.622168e-02	ci right 1.738260e-02	k: 3191	n:190000
Cons ci ratio: 5.707475e-03	ci left: 7.108282e-01	ci right 7.149021e-01	k: 135445	n:190000
KS ci ratio: 1.245771e-01	ci left: 4.861136e-03	ci right 5.511997e-03	k: 984	n:190000
OVCH1   190000 perm   55 sec   (3427 perm/sec)   p_kst 5.178947e-03   p_cons 7.128684e-01   p_joint 1.679474e-02

Joint ci ratio: 7.088632e-02	ci left: 1.452586e-02	ci right 1.559826e-02	k: 3011	n:200000
Cons ci ratio: 5.560016e-03	ci left: 7.110971e-01	ci right 7.150668e-01	k: 142617	n:200000
KS ci ratio: 1.213546e-01	ci left: 4.874930e-03	ci right 5.509542e-03	k: 1037	n:200000
OVCH1   200000 perm   59 sec   (3385 perm/sec)   p_kst 5.185000e-03   p_cons 7.130850e-01   p_joint 1.505500e-02

Joint ci ratio: 6.650214e-02	ci left: 1.573462e-02	ci right 1.682165e-02	k: 3417	n:210000
Cons ci ratio: 5.427400e-03	ci left: 7.110409e-01	ci right 7.149152e-01	k: 149726	n:210000
KS ci ratio: 1.183700e-01	ci left: 4.887606e-03	ci right 5.507125e-03	k: 1090	n:210000
OVCH1   210000 perm   63 sec   (3347 perm/sec)   p_kst 5.190476e-03   p_cons 7.129810e-01   p_joint 1.627143e-02

Joint ci ratio: 6.566407e-02	ci left: 1.541719e-02	ci right 1.646835e-02	k: 3506	n:220000
Cons ci ratio: 5.305020e-03	ci left: 7.108997e-01	ci right 7.146856e-01	k: 156815	n:220000
KS ci ratio: 1.155445e-01	ci left: 4.903719e-03	ci right 5.509430e-03	k: 1144	n:220000
OVCH1   220000 perm   66 sec   (3310 perm/sec)   p_kst 5.200000e-03   p_cons 7.127955e-01   p_joint 1.593636e-02

Joint ci ratio: 6.771577e-02	ci left: 1.387433e-02	ci right 1.485101e-02	k: 3302	n:230000
Cons ci ratio: 5.184608e-03	ci left: 7.112423e-01	ci right 7.149437e-01	k: 164012	n:230000
KS ci ratio: 1.129595e-01	ci left: 4.914365e-03	ci right 5.506906e-03	k: 1197	n:230000
OVCH1   230000 perm   70 sec   (3274 perm/sec)   p_kst 5.204348e-03   p_cons 7.130957e-01   p_joint 1.435652e-02

Joint ci ratio: 7.335644e-02	ci left: 1.132680e-02	ci right 1.219339e-02	k: 2821	n:240000
Cons ci ratio: 5.075341e-03	ci left: 7.112899e-01	ci right 7.149133e-01	k: 171145	n:240000
KS ci ratio: 1.135929e-01	ci left: 4.656932e-03	ci right 5.221792e-03	k: 1184	n:240000
OVCH1   240000 perm   74 sec   (3239 perm/sec)   p_kst 4.933333e-03   p_cons 7.131042e-01   p_joint 1.175417e-02

Joint ci ratio: 6.814306e-02	ci left: 1.261862e-02	ci right 1.351273e-02	k: 3265	n:250000
Cons ci ratio: 4.975378e-03	ci left: 7.111141e-01	ci right 7.146649e-01	k: 178223	n:250000
KS ci ratio: 1.112696e-01	ci left: 4.665032e-03	ci right 5.218541e-03	k: 1234	n:250000
OVCH1   250000 perm   78 sec   (3204 perm/sec)   p_kst 4.936000e-03   p_cons 7.128920e-01   p_joint 1.306000e-02

Joint ci ratio: 6.548140e-02	ci left: 1.315073e-02	ci right 1.404477e-02	k: 3534	n:260000
Cons ci ratio: 4.879397e-03	ci left: 7.110951e-01	ci right 7.145771e-01	k: 185338	n:260000
KS ci ratio: 1.082399e-01	ci left: 4.747459e-03	ci right 5.294434e-03	k: 1304	n:260000
OVCH1   260000 perm   82 sec   (3170 perm/sec)   p_kst 5.015385e-03   p_cons 7.128385e-01   p_joint 1.359231e-02

Joint ci ratio: 6.772659e-02	ci left: 1.184030e-02	ci right 1.267393e-02	k: 3308	n:270000
Cons ci ratio: 4.788982e-03	ci left: 7.110595e-01	ci right 7.144766e-01	k: 192448	n:270000
KS ci ratio: 1.061454e-01	ci left: 4.759058e-03	ci right 5.296096e-03	k: 1356	n:270000
OVCH1   270000 perm   86 sec   (3139 perm/sec)   p_kst 5.022222e-03   p_cons 7.127704e-01   p_joint 1.225185e-02

Joint ci ratio: 6.671866e-02	ci left: 1.177207e-02	ci right 1.258808e-02	k: 3409	n:280000
Cons ci ratio: 4.708501e-03	ci left: 7.105835e-01	ci right 7.139407e-01	k: 199434	n:280000
KS ci ratio: 1.043543e-01	ci left: 4.752529e-03	ci right 5.279225e-03	k: 1403	n:280000
OVCH1   280000 perm   90 sec   (3107 perm/sec)   p_kst 5.010714e-03   p_cons 7.122643e-01   p_joint 1.217500e-02

Joint ci ratio: 6.580186e-02	ci left: 1.169167e-02	ci right 1.249054e-02	k: 3505	n:290000
Cons ci ratio: 4.627372e-03	ci left: 7.105449e-01	ci right 7.138439e-01	k: 206537	n:290000
KS ci ratio: 1.024382e-01	ci left: 4.766683e-03	ci right 5.284664e-03	k: 1456	n:290000
OVCH1   290000 perm   94 sec   (3075 perm/sec)   p_kst 5.020690e-03   p_cons 7.121966e-01   p_joint 1.208621e-02

Joint ci ratio: 6.519715e-02	ci left: 1.151831e-02	ci right 1.229783e-02	k: 3571	n:300000
Cons ci ratio: 4.551999e-03	ci left: 7.103559e-01	ci right 7.136001e-01	k: 213594	n:300000
KS ci ratio: 1.008254e-01	ci left: 4.760477e-03	ci right 5.269158e-03	k: 1503	n:300000
OVCH1   300000 perm   99 sec   (3044 perm/sec)   p_kst 5.010000e-03   p_cons 7.119800e-01   p_joint 1.190333e-02

Joint ci ratio: 6.288220e-02	ci left: 1.199117e-02	ci right 1.277283e-02	k: 3837	n:310000
Cons ci ratio: 4.476985e-03	ci left: 7.104734e-01	ci right 7.136645e-01	k: 220742	n:310000
KS ci ratio: 9.951247e-02	ci left: 4.732709e-03	ci right 5.231453e-03	k: 1543	n:310000
OVCH1   310000 perm   103 sec   (3014 perm/sec)   p_kst 4.977419e-03   p_cons 7.120710e-01   p_joint 1.237742e-02

Outputting figure to mutsig2_images.part000000000124/OVCH1.6_3517_310000_0.0049774_0.71207_0.012377.png
                gene_name: OVCH1
               theta_stop: 0.100 
                    nperm: 310000 
                     p_ks: 0.0050 
        ci_ks_bounds_left: 0.0047 
       ci_ks_bounds_right: 0.0052 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.012 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.013 

Current progress: 9 percent done.
OR9I1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.690855e-02	ci left: 4.014334e-01	ci right 4.208184e-01	k: 4111	n:10000
Cons ci ratio: 5.431310e-02	ci left: 3.330967e-01	ci right 3.517951e-01	k: 3424	n:10000
KS ci ratio: 4.897433e-02	ci left: 3.808216e-01	ci right 4.000423e-01	k: 3904	n:10000
OR9I1   10000 perm   2 sec   (6102 perm/sec)   p_kst 3.904000e-01   p_cons 3.424000e-01   p_joint 4.111000e-01

Outputting figure to mutsig2_images.part000000000124/OR9I1.5_949_10000_0.3904_0.3424_0.4111.png
                gene_name: OR9I1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 11 percent done.
OR9Q2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.971741e-02	ci left: 2.317548e-01	ci right 2.485968e-01	k: 2401	n:10000
Cons ci ratio: 9.715510e-03	ci left: 9.374458e-01	ci right 9.466946e-01	k: 9422	n:10000
KS ci ratio: 1.217655e-01	ci left: 8.815461e-02	ci right 9.968320e-02	k: 938	n:10000
OR9Q2   10000 perm   1 sec   (6728 perm/sec)   p_kst 9.380000e-02   p_cons 9.422000e-01   p_joint 2.401000e-01

Joint ci ratio: 4.909636e-02	ci left: 2.357301e-01	ci right 2.476451e-01	k: 4833	n:20000
Cons ci ratio: 6.839238e-03	ci left: 9.393377e-01	ci right 9.458328e-01	k: 18853	n:20000
KS ci ratio: 8.736650e-02	ci left: 8.744074e-02	ci right 9.547849e-02	k: 1828	n:20000
OR9Q2   20000 perm   3 sec   (5940 perm/sec)   p_kst 9.140000e-02   p_cons 9.426500e-01   p_joint 2.416500e-01

Outputting figure to mutsig2_images.part000000000124/OR9Q2.5_949_20000_0.0914_0.94265_0.24165.png
                gene_name: OR9Q2
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.091 
        ci_ks_bounds_left: 0.087 
       ci_ks_bounds_right: 0.095 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 13 percent done.
OS9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.317267e-02	ci left: 4.420111e-01	ci right 4.616170e-01	k: 4518	n:10000
Cons ci ratio: 1.066050e-01	ci left: 1.127155e-01	ci right 1.255073e-01	k: 1190	n:10000
KS ci ratio: 3.640872e-02	ci left: 5.269672e-01	ci right 5.466113e-01	k: 5368	n:10000
OS9   10000 perm   2 sec   (5976 perm/sec)   p_kst 5.368000e-01   p_cons 1.190000e-01   p_joint 4.518000e-01

Joint ci ratio: 3.897471e-02	ci left: 3.293038e-01	ci right 3.424439e-01	k: 6717	n:20000
Cons ci ratio: 7.455001e-02	ci left: 1.169040e-01	ci right 1.260064e-01	k: 2428	n:20000
KS ci ratio: 2.601961e-02	ci left: 5.246051e-01	ci right 5.384857e-01	k: 10631	n:20000
OS9   20000 perm   4 sec   (5459 perm/sec)   p_kst 5.315500e-01   p_cons 1.214000e-01   p_joint 3.358500e-01

Outputting figure to mutsig2_images.part000000000124/OS9.5_2064_20000_0.53155_0.1214_0.33585.png
                gene_name: OS9
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 16 percent done.
OSMR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.075816e-02	ci left: 7.727630e-01	ci right 7.890731e-01	k: 7810	n:10000
Cons ci ratio: 3.531015e-02	ci left: 5.421894e-01	ci right 5.617803e-01	k: 5520	n:10000
KS ci ratio: 2.724192e-02	ci left: 6.650151e-01	ci right 6.834832e-01	k: 6743	n:10000
OSMR   10000 perm   2 sec   (5698 perm/sec)   p_kst 6.743000e-01   p_cons 5.520000e-01   p_joint 7.810000e-01

Outputting figure to mutsig2_images.part000000000124/OSMR.5_3046_10000_0.6743_0.552_0.781.png
                gene_name: OSMR
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 18 percent done.
OTOL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.390452e-02	ci left: 5.622325e-01	ci right 5.817255e-01	k: 5720	n:10000
Cons ci ratio: 7.422056e-02	ci left: 2.099406e-01	ci right 2.262240e-01	k: 2180	n:10000
KS ci ratio: 3.243155e-02	ci left: 5.838973e-01	ci right 6.032481e-01	k: 5936	n:10000
OTOL1   10000 perm   2 sec   (6186 perm/sec)   p_kst 5.936000e-01   p_cons 2.180000e-01   p_joint 5.720000e-01

Outputting figure to mutsig2_images.part000000000124/OTOL1.5_1448_10000_0.5936_0.218_0.572.png
                gene_name: OTOL1
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 20 percent done.
OVGP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.374555e-02	ci left: 5.645385e-01	ci right 5.840182e-01	k: 5743	n:10000
Cons ci ratio: 6.822271e-02	ci left: 2.396590e-01	ci right 2.566879e-01	k: 2481	n:10000
KS ci ratio: 4.089238e-02	ci left: 4.689664e-01	ci right 4.886460e-01	k: 4788	n:10000
OVGP1   10000 perm   2 sec   (5682 perm/sec)   p_kst 4.788000e-01   p_cons 2.481000e-01   p_joint 5.743000e-01

Outputting figure to mutsig2_images.part000000000124/OVGP1.5_2081_10000_0.4788_0.2481_0.5743.png
                gene_name: OVGP1
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 22 percent done.
P2RX3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.019010e-01	ci left: 1.222933e-01	ci right 1.355237e-01	k: 1288	n:10000
Cons ci ratio: 1.360970e-01	ci left: 7.136438e-02	ci right 8.188384e-02	k: 765	n:10000
KS ci ratio: 5.295449e-02	ci left: 3.445215e-01	ci right 3.633636e-01	k: 3539	n:10000
P2RX3   10000 perm   2 sec   (6234 perm/sec)   p_kst 3.539000e-01   p_cons 7.650000e-02   p_joint 1.288000e-01

Joint ci ratio: 6.817588e-02	ci left: 1.369927e-01	ci right 1.467117e-01	k: 2836	n:20000
Cons ci ratio: 9.573051e-02	ci left: 7.363535e-02	ci right 8.108808e-02	k: 1546	n:20000
KS ci ratio: 3.883536e-02	ci left: 3.308959e-01	ci right 3.440514e-01	k: 6749	n:20000
P2RX3   20000 perm   4 sec   (5288 perm/sec)   p_kst 3.374500e-01   p_cons 7.730000e-02   p_joint 1.418000e-01

Outputting figure to mutsig2_images.part000000000124/P2RX3.5_1242_20000_0.33745_0.0773_0.1418.png
                gene_name: P2RX3
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.077 
      ci_cons_bounds_left: 0.074 
     ci_cons_bounds_right: 0.081 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 24 percent done.
OSBP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.293816e-02	ci left: 4.447053e-01	ci right 4.643212e-01	k: 4545	n:10000
Cons ci ratio: 4.999771e-02	ci left: 3.710696e-01	ci right 3.902000e-01	k: 3806	n:10000
KS ci ratio: 4.145358e-02	ci left: 4.621749e-01	ci right 4.818414e-01	k: 4720	n:10000
OSBP2   10000 perm   2 sec   (5882 perm/sec)   p_kst 4.720000e-01   p_cons 3.806000e-01   p_joint 4.545000e-01

Outputting figure to mutsig2_images.part000000000124/OSBP2.4_2807_10000_0.472_0.3806_0.4545.png
                gene_name: OSBP2
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 27 percent done.
OSBPL8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.280068e-02	ci left: 7.385604e-01	ci right 7.556954e-01	k: 7472	n:10000
KS ci ratio: 2.736601e-02	ci left: 6.630012e-01	ci right 6.814983e-01	k: 6723	n:10000
OSBPL8   10000 perm   2 sec   (6245 perm/sec)   p_kst 6.723000e-01   p_cons 7.472000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000124/OSBPL8.4_2762_10000_0.6723_0.7472_1.png
                gene_name: OSBPL8
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 29 percent done.
OTOP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.463571e-02	ci left: 8.711183e-01	ci right 8.840608e-01	k: 8777	n:10000
Cons ci ratio: 4.392995e-02	ci left: 4.334314e-01	ci right 4.530017e-01	k: 4432	n:10000
KS ci ratio: 1.381978e-02	ci left: 8.831915e-01	ci right 8.955806e-01	k: 8895	n:10000
OTOP1   10000 perm   2 sec   (6442 perm/sec)   p_kst 8.895000e-01   p_cons 4.432000e-01   p_joint 8.777000e-01

Outputting figure to mutsig2_images.part000000000124/OTOP1.4_1863_10000_0.8895_0.4432_0.8777.png
                gene_name: OTOP1
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 31 percent done.
OTUD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.939328e-02	ci left: 1.278700e-01	ci right 1.413437e-01	k: 1345	n:10000
Cons ci ratio: 6.166482e-02	ci left: 2.788403e-01	ci right 2.966835e-01	k: 2877	n:10000
KS ci ratio: 1.032853e-01	ci left: 1.193599e-01	ci right 1.324588e-01	k: 1258	n:10000
OTUD4   10000 perm   2 sec   (5362 perm/sec)   p_kst 1.258000e-01   p_cons 2.877000e-01   p_joint 1.345000e-01

Joint ci ratio: 6.723964e-02	ci left: 1.403443e-01	ci right 1.501591e-01	k: 2904	n:20000
Cons ci ratio: 4.259406e-02	ci left: 2.911193e-01	ci right 3.038396e-01	k: 5949	n:20000
KS ci ratio: 7.247628e-02	ci left: 1.229562e-01	ci right 1.322524e-01	k: 2551	n:20000
OTUD4   20000 perm   4 sec   (4984 perm/sec)   p_kst 1.275500e-01   p_cons 2.974500e-01   p_joint 1.452000e-01

Outputting figure to mutsig2_images.part000000000124/OTUD4.4_3234_20000_0.12755_0.29745_0.1452.png
                gene_name: OTUD4
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 33 percent done.
OTUD7B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.254881e-02	ci left: 2.730962e-01	ci right 2.908310e-01	k: 2819	n:10000
Cons ci ratio: 2.019685e-01	ci left: 3.262466e-02	ci right 4.004861e-02	k: 362	n:10000
KS ci ratio: 1.839835e-02	ci left: 8.118192e-01	ci right 8.269942e-01	k: 8195	n:10000
OTUD7B   10000 perm   2 sec   (6114 perm/sec)   p_kst 8.195000e-01   p_cons 3.620000e-02   p_joint 2.819000e-01

Joint ci ratio: 4.844886e-02	ci left: 2.405889e-01	ci right 2.525849e-01	k: 4931	n:20000
Cons ci ratio: 1.463025e-01	ci left: 3.210991e-02	ci right 3.722654e-02	k: 692	n:20000
KS ci ratio: 1.303554e-02	ci left: 8.134916e-01	ci right 8.242155e-01	k: 16378	n:20000
OTUD7B   20000 perm   4 sec   (5510 perm/sec)   p_kst 8.189000e-01   p_cons 3.460000e-02   p_joint 2.465500e-01

Joint ci ratio: 3.953008e-02	ci left: 2.419623e-01	ci right 2.517534e-01	k: 7405	n:30000
Cons ci ratio: 1.175088e-01	ci left: 3.366123e-02	ci right 3.789596e-02	k: 1072	n:30000
KS ci ratio: 1.052357e-02	ci left: 8.178593e-01	ci right 8.265449e-01	k: 24667	n:30000
OTUD7B   30000 perm   6 sec   (5222 perm/sec)   p_kst 8.222333e-01   p_cons 3.573333e-02   p_joint 2.468333e-01

Joint ci ratio: 3.106934e-02	ci left: 2.802311e-01	ci right 2.891002e-01	k: 11386	n:40000
Cons ci ratio: 1.023112e-01	ci left: 3.358602e-02	ci right 3.723183e-02	k: 1415	n:40000
KS ci ratio: 9.120122e-03	ci left: 8.182408e-01	ci right 8.257624e-01	k: 32881	n:40000
OTUD7B   40000 perm   8 sec   (5032 perm/sec)   p_kst 8.220250e-01   p_cons 3.537500e-02   p_joint 2.846500e-01

Joint ci ratio: 3.306509e-02	ci left: 2.157790e-01	ci right 2.230536e-01	k: 10970	n:50000
Cons ci ratio: 9.159060e-02	ci left: 3.371907e-02	ci right 3.697516e-02	k: 1766	n:50000
KS ci ratio: 8.221439e-03	ci left: 8.163219e-01	ci right 8.230809e-01	k: 40986	n:50000
OTUD7B   50000 perm   10 sec   (4933 perm/sec)   p_kst 8.197200e-01   p_cons 3.532000e-02   p_joint 2.194000e-01

Outputting figure to mutsig2_images.part000000000124/OTUD7B.4_2576_50000_0.81972_0.03532_0.2194.png
                gene_name: OTUD7B
               theta_stop: 0.092 
                    nperm: 50000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.035 
      ci_cons_bounds_left: 0.034 
     ci_cons_bounds_right: 0.037 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.22 

Current progress: 36 percent done.
OXSR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.518244e-02	ci left: 8.628422e-01	ci right 8.761417e-01	k: 8696	n:10000
Cons ci ratio: 5.205220e-02	ci left: 3.523733e-01	ci right 3.713072e-01	k: 3618	n:10000
KS ci ratio: 5.184518e-03	ci left: 9.801637e-01	ci right 9.853496e-01	k: 9829	n:10000
OXSR1   10000 perm   2 sec   (5571 perm/sec)   p_kst 9.829000e-01   p_cons 3.618000e-01   p_joint 8.696000e-01

Outputting figure to mutsig2_images.part000000000124/OXSR1.4_1656_10000_0.9829_0.3618_0.8696.png
                gene_name: OXSR1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.88 

Current progress: 38 percent done.
P2RX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.208266e-02	ci left: 7.505939e-01	ci right 7.674550e-01	k: 7591	n:10000
Cons ci ratio: 7.079331e-03	ci left: 9.648873e-01	ci right 9.718363e-01	k: 9685	n:10000
KS ci ratio: 3.235097e-02	ci left: 5.851015e-01	ci right 6.044433e-01	k: 5948	n:10000
P2RX2   10000 perm   2 sec   (5907 perm/sec)   p_kst 5.948000e-01   p_cons 9.685000e-01   p_joint 7.591000e-01

Outputting figure to mutsig2_images.part000000000124/P2RX2.4_1534_10000_0.5948_0.9685_0.7591.png
                gene_name: P2RX2
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 40 percent done.
OR9Q1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.326580e-01	ci left: 7.494951e-02	ci right 8.569647e-02	k: 802	n:10000
Cons ci ratio: 5.882622e-02	ci left: 2.983636e-01	ci right 3.165487e-01	k: 3074	n:10000
KS ci ratio: 2.505034e-01	ci left: 2.090184e-02	ci right 2.697984e-02	k: 238	n:10000
OR9Q1   10000 perm   2 sec   (6055 perm/sec)   p_kst 2.380000e-02   p_cons 3.074000e-01   p_joint 8.020000e-02

Joint ci ratio: 1.264445e-01	ci left: 4.294396e-02	ci right 4.878899e-02	k: 916	n:20000
Cons ci ratio: 4.165032e-02	ci left: 3.005115e-01	ci right 3.133446e-01	k: 6138	n:20000
KS ci ratio: 1.863283e-01	ci left: 1.963004e-02	ci right 2.371068e-02	k: 432	n:20000
OR9Q1   20000 perm   4 sec   (5707 perm/sec)   p_kst 2.160000e-02   p_cons 3.069000e-01   p_joint 4.580000e-02

Joint ci ratio: 1.046249e-01	ci left: 4.235666e-02	ci right 4.706535e-02	k: 1340	n:30000
Cons ci ratio: 3.413166e-02	ci left: 3.001574e-01	ci right 3.106137e-01	k: 9161	n:30000
KS ci ratio: 1.461008e-01	ci left: 2.171899e-02	ci right 2.517415e-02	k: 702	n:30000
OR9Q1   30000 perm   6 sec   (5060 perm/sec)   p_kst 2.340000e-02   p_cons 3.053667e-01   p_joint 4.466667e-02

Joint ci ratio: 6.746813e-02	ci left: 7.519327e-02	ci right 8.046821e-02	k: 3112	n:40000
Cons ci ratio: 2.950847e-02	ci left: 3.015852e-01	ci right 3.106429e-01	k: 12244	n:40000
KS ci ratio: 1.266890e-01	ci left: 2.189228e-02	ci right 2.487746e-02	k: 934	n:40000
OR9Q1   40000 perm   8 sec   (5048 perm/sec)   p_kst 2.335000e-02   p_cons 3.061000e-01   p_joint 7.780000e-02

Joint ci ratio: 6.106524e-02	ci left: 7.381021e-02	ci right 7.847915e-02	k: 3806	n:50000
Cons ci ratio: 2.630924e-02	ci left: 3.034166e-01	ci right 3.115257e-01	k: 15373	n:50000
KS ci ratio: 1.133516e-01	ci left: 2.203435e-02	ci right 2.470139e-02	k: 1167	n:50000
OR9Q1   50000 perm   10 sec   (4881 perm/sec)   p_kst 2.334000e-02   p_cons 3.074600e-01   p_joint 7.612000e-02

Joint ci ratio: 5.605347e-02	ci left: 7.325020e-02	ci right 7.749098e-02	k: 4521	n:60000
Cons ci ratio: 2.409594e-02	ci left: 3.023802e-01	ci right 3.097719e-01	k: 18364	n:60000
KS ci ratio: 1.041856e-01	ci left: 2.184781e-02	ci right 2.426529e-02	k: 1382	n:60000
OR9Q1   60000 perm   12 sec   (4848 perm/sec)   p_kst 2.303333e-02   p_cons 3.060667e-01   p_joint 7.535000e-02

Joint ci ratio: 6.460137e-02	ci left: 4.835481e-02	ci right 5.159691e-02	k: 3497	n:70000
Cons ci ratio: 2.232339e-02	ci left: 3.023735e-01	ci right 3.092140e-01	k: 21405	n:70000
KS ci ratio: 9.631984e-02	ci left: 2.199982e-02	ci right 2.423995e-02	k: 1617	n:70000
OR9Q1   70000 perm   15 sec   (4796 perm/sec)   p_kst 2.310000e-02   p_cons 3.057857e-01   p_joint 4.995714e-02

Outputting figure to mutsig2_images.part000000000124/OR9Q1.3_937_70000_0.0231_0.30579_0.049957.png
                gene_name: OR9Q1
               theta_stop: 0.096 
                    nperm: 70000 
                     p_ks: 0.023 
        ci_ks_bounds_left: 0.022 
       ci_ks_bounds_right: 0.024 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.050 
     ci_joint_bounds_left: 0.048 
    ci_joint_bounds_right: 0.052 

Current progress: 42 percent done.
ORC1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.624798e-02	ci left: 5.291699e-01	ci right 5.488074e-01	k: 5390	n:10000
Cons ci ratio: 1.613229e-02	ci left: 8.481495e-01	ci right 8.620429e-01	k: 8552	n:10000
KS ci ratio: 4.721990e-02	ci left: 3.982459e-01	ci right 4.176078e-01	k: 4079	n:10000
ORC1L   10000 perm   2 sec   (5989 perm/sec)   p_kst 4.079000e-01   p_cons 8.552000e-01   p_joint 5.390000e-01

Outputting figure to mutsig2_images.part000000000124/ORC1L.3_2650_10000_0.4079_0.8552_0.539.png
                gene_name: ORC1L
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 44 percent done.
ORC5L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.838285e-02	ci left: 3.865951e-01	ci right 4.058654e-01	k: 3962	n:10000
Cons ci ratio: 1.473387e-01	ci left: 6.121070e-02	ci right 7.104390e-02	k: 660	n:10000
KS ci ratio: 2.819591e-02	ci left: 6.496136e-01	ci right 6.682937e-01	k: 6590	n:10000
ORC5L   10000 perm   2 sec   (6353 perm/sec)   p_kst 6.590000e-01   p_cons 6.600000e-02   p_joint 3.962000e-01

Joint ci ratio: 3.717172e-02	ci left: 3.506548e-01	ci right 3.639867e-01	k: 7146	n:20000
Cons ci ratio: 1.125835e-01	ci left: 5.392380e-02	ci right 6.040569e-02	k: 1142	n:20000
KS ci ratio: 1.976780e-02	ci left: 6.562500e-01	ci right 6.694026e-01	k: 13257	n:20000
ORC5L   20000 perm   4 sec   (5706 perm/sec)   p_kst 6.628500e-01   p_cons 5.710000e-02   p_joint 3.573000e-01

Joint ci ratio: 3.000672e-02	ci left: 3.571235e-01	ci right 3.680364e-01	k: 10877	n:30000
Cons ci ratio: 8.532216e-02	ci left: 6.292191e-02	ci right 6.856255e-02	k: 1971	n:30000
KS ci ratio: 1.610866e-02	ci left: 6.583550e-01	ci right 6.690799e-01	k: 19912	n:30000
ORC5L   30000 perm   6 sec   (5308 perm/sec)   p_kst 6.637333e-01   p_cons 6.570000e-02   p_joint 3.625667e-01

Outputting figure to mutsig2_images.part000000000124/ORC5L.3_1462_30000_0.66373_0.0657_0.36257.png
                gene_name: ORC5L
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.066 
      ci_cons_bounds_left: 0.063 
     ci_cons_bounds_right: 0.069 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 47 percent done.
OSBP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.116695e-01	ci left: 1.035416e-01	ci right 1.158868e-01	k: 1096	n:10000
Cons ci ratio: 2.359145e-02	ci left: 7.253233e-01	ci right 7.427402e-01	k: 7341	n:10000
KS ci ratio: 2.209987e-01	ci left: 2.712237e-02	ci right 3.395474e-02	k: 304	n:10000
OSBP   10000 perm   2 sec   (5897 perm/sec)   p_kst 3.040000e-02   p_cons 7.341000e-01   p_joint 1.096000e-01

Joint ci ratio: 1.256566e-01	ci left: 4.347738e-02	ci right 4.935540e-02	k: 927	n:20000
Cons ci ratio: 1.655378e-02	ci left: 7.309400e-01	ci right 7.431911e-01	k: 14742	n:20000
KS ci ratio: 1.524487e-01	ci left: 2.955589e-02	ci right 3.448140e-02	k: 639	n:20000
OSBP   20000 perm   4 sec   (4878 perm/sec)   p_kst 3.195000e-02   p_cons 7.371000e-01   p_joint 4.635000e-02

Joint ci ratio: 8.228152e-02	ci left: 6.743212e-02	ci right 7.325142e-02	k: 2109	n:30000
Cons ci ratio: 1.320944e-02	ci left: 7.409333e-01	ci right 7.508191e-01	k: 22377	n:30000
KS ci ratio: 1.265318e-01	ci left: 2.903531e-02	ci right 3.298954e-02	k: 929	n:30000
OSBP   30000 perm   6 sec   (4815 perm/sec)   p_kst 3.096667e-02   p_cons 7.459000e-01   p_joint 7.030000e-02

Joint ci ratio: 9.464096e-02	ci left: 3.917540e-02	ci right 4.309157e-02	k: 1644	n:40000
Cons ci ratio: 1.140428e-02	ci left: 7.427848e-01	ci right 7.513293e-01	k: 29883	n:40000
KS ci ratio: 1.112580e-01	ci left: 2.842294e-02	ci right 3.179574e-02	k: 1203	n:40000
OSBP   40000 perm   8 sec   (4762 perm/sec)   p_kst 3.007500e-02   p_cons 7.470750e-01   p_joint 4.110000e-02

Joint ci ratio: 8.706795e-02	ci left: 3.726116e-02	ci right 4.067263e-02	k: 1947	n:50000
Cons ci ratio: 1.018074e-02	ci left: 7.439692e-01	ci right 7.516021e-01	k: 37390	n:50000
KS ci ratio: 9.903846e-02	ci left: 2.887341e-02	ci right 3.190143e-02	k: 1518	n:50000
OSBP   50000 perm   11 sec   (4654 perm/sec)   p_kst 3.036000e-02   p_cons 7.478000e-01   p_joint 3.894000e-02

Outputting figure to mutsig2_images.part000000000124/OSBP.3_2480_50000_0.03036_0.7478_0.03894.png
                gene_name: OSBP
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.030 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.039 
     ci_joint_bounds_left: 0.037 
    ci_joint_bounds_right: 0.041 

Current progress: 49 percent done.
OSBPL10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.862839e-01	ci left: 3.843896e-02	ci right 4.643037e-02	k: 423	n:10000
Cons ci ratio: 3.802803e-02	ci left: 5.052515e-01	ci right 5.249398e-01	k: 5151	n:10000
KS ci ratio: 3.442409e-01	ci left: 1.059811e-02	ci right 1.509234e-02	k: 127	n:10000
OSBPL10   10000 perm   2 sec   (6247 perm/sec)   p_kst 1.270000e-02   p_cons 5.151000e-01   p_joint 4.230000e-02

Joint ci ratio: 2.405811e-01	ci left: 1.152325e-02	ci right 1.472062e-02	k: 261	n:20000
Cons ci ratio: 2.669602e-02	ci left: 5.117981e-01	ci right 5.256965e-01	k: 10375	n:20000
KS ci ratio: 2.478726e-01	ci left: 1.081866e-02	ci right 1.392552e-02	k: 246	n:20000
OSBPL10   20000 perm   4 sec   (5078 perm/sec)   p_kst 1.230000e-02   p_cons 5.187500e-01   p_joint 1.305000e-02

Joint ci ratio: 2.092127e-01	ci left: 1.035593e-02	ci right 1.280670e-02	k: 346	n:30000
Cons ci ratio: 2.192832e-02	ci left: 5.100936e-01	ci right 5.214367e-01	k: 15473	n:30000
KS ci ratio: 2.080031e-01	ci left: 1.048237e-02	ci right 1.294689e-02	k: 350	n:30000
OSBPL10   30000 perm   6 sec   (5037 perm/sec)   p_kst 1.166667e-02   p_cons 5.157667e-01   p_joint 1.153333e-02

Joint ci ratio: 1.439550e-01	ci left: 1.688847e-02	ci right 1.953214e-02	k: 727	n:40000
Cons ci ratio: 1.897329e-02	ci left: 5.113141e-01	ci right 5.211335e-01	k: 20649	n:40000
KS ci ratio: 1.799423e-01	ci left: 1.066927e-02	ci right 1.280250e-02	k: 468	n:40000
OSBPL10   40000 perm   8 sec   (4957 perm/sec)   p_kst 1.170000e-02   p_cons 5.162250e-01   p_joint 1.817500e-02

Joint ci ratio: 1.285419e-01	ci left: 1.708509e-02	ci right 1.945132e-02	k: 912	n:50000
Cons ci ratio: 1.696644e-02	ci left: 5.119489e-01	ci right 5.207292e-01	k: 25817	n:50000
KS ci ratio: 1.601528e-01	ci left: 1.089112e-02	ci right 1.280618e-02	k: 591	n:50000
OSBPL10   50000 perm   10 sec   (4903 perm/sec)   p_kst 1.182000e-02   p_cons 5.163400e-01   p_joint 1.824000e-02

Joint ci ratio: 1.106196e-01	ci left: 1.936485e-02	ci right 2.164853e-02	k: 1229	n:60000
Cons ci ratio: 1.549207e-02	ci left: 5.122090e-01	ci right 5.202228e-01	k: 30973	n:60000
KS ci ratio: 1.391712e-01	ci left: 1.214110e-02	ci right 1.397311e-02	k: 782	n:60000
OSBPL10   60000 perm   12 sec   (4827 perm/sec)   p_kst 1.303333e-02   p_cons 5.162167e-01   p_joint 2.048333e-02

Joint ci ratio: 1.253815e-01	ci left: 1.290731e-02	ci right 1.464762e-02	k: 963	n:70000
Cons ci ratio: 1.435735e-02	ci left: 5.120044e-01	ci right 5.194229e-01	k: 36100	n:70000
KS ci ratio: 1.276147e-01	ci left: 1.245061e-02	ci right 1.416151e-02	k: 930	n:70000
OSBPL10   70000 perm   15 sec   (4756 perm/sec)   p_kst 1.328571e-02   p_cons 5.157143e-01   p_joint 1.375714e-02

Joint ci ratio: 1.215325e-01	ci left: 1.205675e-02	ci right 1.362887e-02	k: 1026	n:80000
Cons ci ratio: 1.342848e-02	ci left: 5.123052e-01	ci right 5.192437e-01	k: 41262	n:80000
KS ci ratio: 1.200608e-01	ci left: 1.235992e-02	ci right 1.395067e-02	k: 1051	n:80000
OSBPL10   80000 perm   17 sec   (4690 perm/sec)   p_kst 1.313750e-02   p_cons 5.157750e-01   p_joint 1.282500e-02

Joint ci ratio: 1.067718e-01	ci left: 1.396712e-02	ci right 1.555327e-02	k: 1327	n:90000
Cons ci ratio: 1.266636e-02	ci left: 5.122734e-01	ci right 5.188145e-01	k: 46399	n:90000
KS ci ratio: 1.122137e-01	ci left: 1.262656e-02	ci right 1.413838e-02	k: 1203	n:90000
OSBPL10   90000 perm   20 sec   (4614 perm/sec)   p_kst 1.336667e-02   p_cons 5.155444e-01   p_joint 1.474444e-02

Joint ci ratio: 1.031003e-01	ci left: 1.351479e-02	ci right 1.499358e-02	k: 1424	n:100000
Cons ci ratio: 1.201865e-02	ci left: 5.123471e-01	ci right 5.185520e-01	k: 51545	n:100000
KS ci ratio: 1.068111e-01	ci left: 1.257966e-02	ci right 1.400878e-02	k: 1328	n:100000
OSBPL10   100000 perm   22 sec   (4526 perm/sec)   p_kst 1.328000e-02   p_cons 5.154500e-01   p_joint 1.424000e-02

Joint ci ratio: 8.390950e-02	ci left: 1.863758e-02	ci right 2.027880e-02	k: 2139	n:110000
Cons ci ratio: 1.147302e-02	ci left: 5.118962e-01	ci right 5.178121e-01	k: 56634	n:110000
KS ci ratio: 1.016608e-01	ci left: 1.265793e-02	ci right 1.402246e-02	k: 1466	n:110000
OSBPL10   110000 perm   25 sec   (4452 perm/sec)   p_kst 1.332727e-02   p_cons 5.148545e-01   p_joint 1.944545e-02

Joint ci ratio: 7.804226e-02	ci left: 1.978743e-02	ci right 2.140252e-02	k: 2470	n:120000
Cons ci ratio: 1.099111e-02	ci left: 5.117261e-01	ci right 5.173899e-01	k: 61747	n:120000
KS ci ratio: 9.682407e-02	ci left: 1.282213e-02	ci right 1.413487e-02	k: 1616	n:120000
OSBPL10   120000 perm   27 sec   (4382 perm/sec)   p_kst 1.346667e-02   p_cons 5.145583e-01   p_joint 2.058333e-02

Outputting figure to mutsig2_images.part000000000124/OSBPL10.3_2343_120000_0.013467_0.51456_0.020583.png
                gene_name: OSBPL10
               theta_stop: 0.097 
                    nperm: 120000 
                     p_ks: 0.013 
        ci_ks_bounds_left: 0.013 
       ci_ks_bounds_right: 0.014 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.021 
     ci_joint_bounds_left: 0.020 
    ci_joint_bounds_right: 0.021 

Current progress: 51 percent done.
OSBPL11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.618837e-03	ci left: 9.839328e-01	ci right 9.885776e-01	k: 9864	n:10000
KS ci ratio: 2.646388e-02	ci left: 6.777071e-01	ci right 6.959839e-01	k: 6869	n:10000
OSBPL11   10000 perm   2 sec   (6102 perm/sec)   p_kst 6.869000e-01   p_cons 9.864000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000124/OSBPL11.3_2296_10000_0.6869_0.9864_1.png
                gene_name: OSBPL11
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 53 percent done.
OSBPL7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.150350e-02	ci left: 4.615758e-01	ci right 4.812409e-01	k: 4714	n:10000
Cons ci ratio: 3.325811e-02	ci left: 5.716584e-01	ci right 5.910942e-01	k: 5814	n:10000
KS ci ratio: 8.783046e-02	ci left: 1.587554e-01	ci right 1.734397e-01	k: 1660	n:10000
OSBPL7   10000 perm   2 sec   (6142 perm/sec)   p_kst 1.660000e-01   p_cons 5.814000e-01   p_joint 4.714000e-01

Outputting figure to mutsig2_images.part000000000124/OSBPL7.3_2617_10000_0.166_0.5814_0.4714.png
                gene_name: OSBPL7
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 56 percent done.
OSGIN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.935064e-02	ci left: 1.279678e-01	ci right 1.414457e-01	k: 1346	n:10000
Cons ci ratio: 5.186117e-02	ci left: 3.540633e-01	ci right 3.730162e-01	k: 3635	n:10000
KS ci ratio: 1.726867e-01	ci left: 4.475507e-02	ci right 5.331009e-02	k: 489	n:10000
OSGIN1   10000 perm   2 sec   (6599 perm/sec)   p_kst 4.890000e-02   p_cons 3.635000e-01   p_joint 1.346000e-01

Joint ci ratio: 7.328493e-02	ci left: 1.205447e-01	ci right 1.297646e-01	k: 2502	n:20000
Cons ci ratio: 3.693819e-02	ci left: 3.535426e-01	ci right 3.668981e-01	k: 7204	n:20000
KS ci ratio: 1.216545e-01	ci left: 4.634031e-02	ci right 5.239157e-02	k: 986	n:20000
OSGIN1   20000 perm   3 sec   (5897 perm/sec)   p_kst 4.930000e-02   p_cons 3.602000e-01   p_joint 1.251000e-01

Joint ci ratio: 9.977507e-02	ci left: 4.648675e-02	ci right 5.140108e-02	k: 1467	n:30000
Cons ci ratio: 2.951323e-02	ci left: 3.647986e-01	ci right 3.757598e-01	k: 11108	n:30000
KS ci ratio: 9.966803e-02	ci left: 4.658437e-02	ci right 5.150343e-02	k: 1470	n:30000
OSGIN1   30000 perm   5 sec   (5616 perm/sec)   p_kst 4.900000e-02   p_cons 3.702667e-01   p_joint 4.890000e-02

Outputting figure to mutsig2_images.part000000000124/OSGIN1.3_1711_30000_0.049_0.37027_0.0489.png
                gene_name: OSGIN1
               theta_stop: 0.100 
                    nperm: 30000 
                     p_ks: 0.049 
        ci_ks_bounds_left: 0.047 
       ci_ks_bounds_right: 0.052 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.049 
     ci_joint_bounds_left: 0.046 
    ci_joint_bounds_right: 0.051 

Current progress: 58 percent done.
OTC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.088549e-02	ci left: 7.706358e-01	ci right 7.870015e-01	k: 7789	n:10000
Cons ci ratio: 1.681647e-02	ci left: 8.373491e-01	ci right 8.516496e-01	k: 8446	n:10000
KS ci ratio: 3.535299e-02	ci left: 5.415883e-01	ci right 5.611817e-01	k: 5514	n:10000
OTC   10000 perm   2 sec   (6513 perm/sec)   p_kst 5.514000e-01   p_cons 8.446000e-01   p_joint 7.789000e-01

Outputting figure to mutsig2_images.part000000000124/OTC.3_1105_10000_0.5514_0.8446_0.7789.png
                gene_name: OTC
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 60 percent done.
OTOP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.006293e-02	ci left: 2.299769e-01	ci right 2.467758e-01	k: 2383	n:10000
Cons ci ratio: 2.237232e-02	ci left: 7.457390e-01	ci right 7.627127e-01	k: 7543	n:10000
KS ci ratio: 1.974952e-01	ci left: 3.414726e-02	ci right 4.172496e-02	k: 378	n:10000
OTOP2   10000 perm   2 sec   (6567 perm/sec)   p_kst 3.780000e-02   p_cons 7.543000e-01   p_joint 2.383000e-01

Joint ci ratio: 7.265587e-02	ci left: 1.224148e-01	ci right 1.316940e-01	k: 2540	n:20000
Cons ci ratio: 1.660076e-02	ci left: 7.298319e-01	ci right 7.420994e-01	k: 14720	n:20000
KS ci ratio: 1.368624e-01	ci left: 3.669759e-02	ci right 4.213736e-02	k: 787	n:20000
OTOP2   20000 perm   3 sec   (5857 perm/sec)   p_kst 3.935000e-02   p_cons 7.360000e-01   p_joint 1.270000e-01

Joint ci ratio: 6.103716e-02	ci left: 1.171653e-01	ci right 1.245750e-01	k: 3625	n:30000
Cons ci ratio: 1.354058e-02	ci left: 7.313750e-01	ci right 7.413792e-01	k: 22092	n:30000
KS ci ratio: 1.140274e-01	ci left: 3.573495e-02	ci right 4.008846e-02	k: 1136	n:30000
OTOP2   30000 perm   5 sec   (5558 perm/sec)   p_kst 3.786667e-02   p_cons 7.364000e-01   p_joint 1.208333e-01

Joint ci ratio: 5.756021e-02	ci left: 1.009014e-01	ci right 1.069062e-01	k: 4155	n:40000
Cons ci ratio: 1.168876e-02	ci left: 7.333093e-01	ci right 7.419562e-01	k: 29506	n:40000
KS ci ratio: 9.936577e-02	ci left: 3.558613e-02	ci right 3.933140e-02	k: 1497	n:40000
OTOP2   40000 perm   7 sec   (5391 perm/sec)   p_kst 3.742500e-02   p_cons 7.376500e-01   p_joint 1.038750e-01

Outputting figure to mutsig2_images.part000000000124/OTOP2.3_1713_40000_0.037425_0.73765_0.10387.png
                gene_name: OTOP2
               theta_stop: 0.099 
                    nperm: 40000 
                     p_ks: 0.037 
        ci_ks_bounds_left: 0.036 
       ci_ks_bounds_right: 0.039 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 62 percent done.
OTUD7A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.686500e-02	ci left: 5.207608e-01	ci right 5.404213e-01	k: 5306	n:10000
Cons ci ratio: 8.343912e-02	ci left: 1.732025e-01	ci right 1.883840e-01	k: 1807	n:10000
KS ci ratio: 3.327177e-02	ci left: 5.714578e-01	ci right 5.908949e-01	k: 5812	n:10000
OTUD7A   10000 perm   2 sec   (6097 perm/sec)   p_kst 5.812000e-01   p_cons 1.807000e-01   p_joint 5.306000e-01

Outputting figure to mutsig2_images.part000000000124/OTUD7A.3_2825_10000_0.5812_0.1807_0.5306.png
                gene_name: OTUD7A
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 64 percent done.
OXCT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.744543e-02	ci left: 3.959551e-01	ci right 4.152999e-01	k: 4056	n:10000
Cons ci ratio: 1.198297e-02	ci left: 9.089508e-01	ci right 9.200063e-01	k: 9146	n:10000
KS ci ratio: 5.581766e-02	ci left: 3.209831e-01	ci right 3.395159e-01	k: 3302	n:10000
OXCT1   10000 perm   2 sec   (6488 perm/sec)   p_kst 3.302000e-01   p_cons 9.146000e-01   p_joint 4.056000e-01

Outputting figure to mutsig2_images.part000000000124/OXCT1.3_1631_10000_0.3302_0.9146_0.4056.png
                gene_name: OXCT1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 67 percent done.
ORC3L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.412956e-02	ci left: 7.163357e-01	ci right 7.339330e-01	k: 7252	n:10000
KS ci ratio: 4.819129e-02	ci left: 3.884867e-01	ci right 4.077727e-01	k: 3981	n:10000
ORC3L   10000 perm   2 sec   (6414 perm/sec)   p_kst 3.981000e-01   p_cons 7.252000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000124/ORC3L.2_2219_10000_0.3981_0.7252_1.png
                gene_name: ORC3L
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 69 percent done.
OSBPL1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.743342e-02	ci left: 8.274759e-01	ci right 8.421285e-01	k: 8349	n:10000
Cons ci ratio: 3.049091e-02	ci left: 6.134166e-01	ci right 6.325117e-01	k: 6230	n:10000
KS ci ratio: 3.411962e-02	ci left: 5.591248e-01	ci right 5.786351e-01	k: 5689	n:10000
OSBPL1A   10000 perm   2 sec   (6275 perm/sec)   p_kst 5.689000e-01   p_cons 6.230000e-01   p_joint 8.349000e-01

Outputting figure to mutsig2_images.part000000000124/OSBPL1A.2_2961_10000_0.5689_0.623_0.8349.png
                gene_name: OSBPL1A
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 71 percent done.
OSBPL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.277720e-01	ci left: 1.178961e-02	ci right 1.649967e-02	k: 140	n:10000
Cons ci ratio: 1.059408e-02	ci left: 9.268889e-01	ci right 9.368578e-01	k: 9320	n:10000
KS ci ratio: 6.264461e-01	ci left: 2.690467e-03	ci right 5.212103e-03	k: 38	n:10000
OSBPL2   10000 perm   1 sec   (6799 perm/sec)   p_kst 3.800000e-03   p_cons 9.320000e-01   p_joint 1.400000e-02

Joint ci ratio: 1.913577e-01	ci left: 1.858107e-02	ci right 2.256002e-02	k: 410	n:20000
Cons ci ratio: 7.545098e-03	ci left: 9.274505e-01	ci right 9.345236e-01	k: 18621	n:20000
KS ci ratio: 4.401516e-01	ci left: 3.083972e-03	ci right 4.865021e-03	k: 78	n:20000
OSBPL2   20000 perm   3 sec   (6100 perm/sec)   p_kst 3.900000e-03   p_cons 9.310500e-01   p_joint 2.050000e-02

Joint ci ratio: 1.132532e-01	ci left: 3.622126e-02	ci right 4.060205e-02	k: 1151	n:30000
Cons ci ratio: 6.111115e-03	ci left: 9.291605e-01	ci right 9.348888e-01	k: 27962	n:30000
KS ci ratio: 3.601489e-01	ci left: 3.226442e-03	ci right 4.672237e-03	k: 117	n:30000
OSBPL2   30000 perm   5 sec   (5800 perm/sec)   p_kst 3.900000e-03   p_cons 9.320667e-01   p_joint 3.836667e-02

Joint ci ratio: 8.366497e-02	ci left: 4.984426e-02	ci right 5.422106e-02	k: 2080	n:40000
Cons ci ratio: 5.263543e-03	ci left: 9.302515e-01	ci right 9.351854e-01	k: 37310	n:40000
KS ci ratio: 3.227175e-01	ci left: 3.082802e-03	ci right 4.291016e-03	k: 146	n:40000
OSBPL2   40000 perm   7 sec   (5596 perm/sec)   p_kst 3.650000e-03   p_cons 9.327500e-01   p_joint 5.200000e-02

Joint ci ratio: 7.541913e-02	ci left: 4.932348e-02	ci right 5.320883e-02	k: 2562	n:50000
Cons ci ratio: 4.700597e-03	ci left: 9.307123e-01	ci right 9.351172e-01	k: 46647	n:50000
KS ci ratio: 2.908406e-01	ci left: 3.094032e-03	ci right 4.164873e-03	k: 180	n:50000
OSBPL2   50000 perm   9 sec   (5427 perm/sec)   p_kst 3.600000e-03   p_cons 9.329400e-01   p_joint 5.124000e-02

Joint ci ratio: 6.871391e-02	ci left: 4.967935e-02	ci right 5.323086e-02	k: 3086	n:60000
Cons ci ratio: 4.272876e-03	ci left: 9.314432e-01	ci right 9.354481e-01	k: 56008	n:60000
KS ci ratio: 2.637992e-01	ci left: 3.183279e-03	ci right 4.165693e-03	k: 219	n:60000
OSBPL2   60000 perm   11 sec   (5300 perm/sec)   p_kst 3.650000e-03   p_cons 9.334667e-01   p_joint 5.143333e-02

Joint ci ratio: 6.347292e-02	ci left: 5.002898e-02	ci right 5.332260e-02	k: 3616	n:70000
Cons ci ratio: 3.964802e-03	ci left: 9.313108e-01	ci right 9.350246e-01	k: 65323	n:70000
KS ci ratio: 2.445499e-01	ci left: 3.210095e-03	ci right 4.117528e-03	k: 255	n:70000
OSBPL2   70000 perm   13 sec   (5191 perm/sec)   p_kst 3.642857e-03   p_cons 9.331857e-01   p_joint 5.165714e-02

Joint ci ratio: 5.910050e-02	ci left: 5.058240e-02	ci right 5.367518e-02	k: 4169	n:80000
Cons ci ratio: 3.714216e-03	ci left: 9.312455e-01	ci right 9.347231e-01	k: 74640	n:80000
KS ci ratio: 2.281972e-01	ci left: 3.255741e-03	ci right 4.105878e-03	k: 293	n:80000
OSBPL2   80000 perm   16 sec   (5090 perm/sec)   p_kst 3.662500e-03   p_cons 9.330000e-01   p_joint 5.211250e-02

Joint ci ratio: 5.566577e-02	ci left: 5.076668e-02	ci right 5.368449e-02	k: 4699	n:90000
Cons ci ratio: 3.509232e-03	ci left: 9.310773e-01	ci right 9.343614e-01	k: 83946	n:90000
KS ci ratio: 2.184013e-01	ci left: 3.177203e-03	ci right 3.966438e-03	k: 320	n:90000
OSBPL2   90000 perm   18 sec   (4990 perm/sec)   p_kst 3.555556e-03   p_cons 9.327333e-01   p_joint 5.221111e-02

Joint ci ratio: 5.283175e-02	ci left: 5.079977e-02	ci right 5.356628e-02	k: 5217	n:100000
Cons ci ratio: 3.327626e-03	ci left: 9.312205e-01	ci right 9.343343e-01	k: 93279	n:100000
KS ci ratio: 2.091648e-01	ci left: 3.133954e-03	ci right 3.875305e-03	k: 349	n:100000
OSBPL2   100000 perm   20 sec   (4908 perm/sec)   p_kst 3.490000e-03   p_cons 9.327900e-01   p_joint 5.217000e-02

Joint ci ratio: 5.030750e-02	ci left: 5.099163e-02	ci right 5.363204e-02	k: 5753	n:110000
Cons ci ratio: 3.175718e-03	ci left: 9.311759e-01	ci right 9.341467e-01	k: 102594	n:110000
KS ci ratio: 1.983993e-01	ci left: 3.185521e-03	ci right 3.895597e-03	k: 388	n:110000
OSBPL2   110000 perm   23 sec   (4814 perm/sec)   p_kst 3.527273e-03   p_cons 9.326727e-01   p_joint 5.230000e-02

Joint ci ratio: 4.628585e-02	ci left: 5.509308e-02	ci right 5.771174e-02	k: 6767	n:120000
Cons ci ratio: 3.046700e-03	ci left: 9.309817e-01	ci right 9.338307e-01	k: 111890	n:120000
KS ci ratio: 1.876079e-01	ci left: 3.284899e-03	ci right 3.972766e-03	k: 434	n:120000
OSBPL2   120000 perm   25 sec   (4731 perm/sec)   p_kst 3.616667e-03   p_cons 9.324167e-01   p_joint 5.639167e-02

Joint ci ratio: 4.457320e-02	ci left: 5.490084e-02	ci right 5.741131e-02	k: 7299	n:130000
Cons ci ratio: 2.925050e-03	ci left: 9.311304e-01	ci right 9.338656e-01	k: 121226	n:130000
KS ci ratio: 1.797223e-01	ci left: 3.318431e-03	ci right 3.980936e-03	k: 473	n:130000
OSBPL2   130000 perm   28 sec   (4643 perm/sec)   p_kst 3.638462e-03   p_cons 9.325077e-01   p_joint 5.614615e-02

Joint ci ratio: 4.063024e-02	ci left: 6.107480e-02	ci right 6.361479e-02	k: 8727	n:140000
Cons ci ratio: 2.819612e-03	ci left: 9.311372e-01	ci right 9.337734e-01	k: 130545	n:140000
KS ci ratio: 1.724172e-01	ci left: 3.361361e-03	ci right 4.002322e-03	k: 514	n:140000
OSBPL2   140000 perm   31 sec   (4560 perm/sec)   p_kst 3.671429e-03   p_cons 9.324643e-01   p_joint 6.233571e-02

Joint ci ratio: 3.938393e-02	ci left: 6.073191e-02	ci right 6.317839e-02	k: 9292	n:150000
Cons ci ratio: 2.726972e-03	ci left: 9.310438e-01	ci right 9.335928e-01	k: 139849	n:150000
KS ci ratio: 1.673007e-01	ci left: 3.341533e-03	ci right 3.957898e-03	k: 546	n:150000
OSBPL2   150000 perm   33 sec   (4488 perm/sec)   p_kst 3.640000e-03   p_cons 9.323267e-01   p_joint 6.194667e-02

Joint ci ratio: 4.036280e-02	ci left: 5.454404e-02	ci right 5.679710e-02	k: 8906	n:160000
Cons ci ratio: 2.644590e-03	ci left: 9.308815e-01	ci right 9.333528e-01	k: 149140	n:160000
KS ci ratio: 1.623330e-01	ci left: 3.336422e-03	ci right 3.931787e-03	k: 580	n:160000
OSBPL2   160000 perm   36 sec   (4423 perm/sec)   p_kst 3.625000e-03   p_cons 9.321250e-01   p_joint 5.566250e-02

Joint ci ratio: 3.915918e-02	ci left: 5.457365e-02	ci right 5.675919e-02	k: 9462	n:170000
Cons ci ratio: 2.563268e-03	ci left: 9.310361e-01	ci right 9.334315e-01	k: 158481	n:170000
KS ci ratio: 1.571432e-01	ci left: 3.360408e-03	ci right 3.939075e-03	k: 619	n:170000
OSBPL2   170000 perm   39 sec   (4356 perm/sec)   p_kst 3.641176e-03   p_cons 9.322412e-01   p_joint 5.565882e-02

Joint ci ratio: 3.814800e-02	ci left: 5.435310e-02	ci right 5.647236e-02	k: 9973	n:180000
Cons ci ratio: 2.492623e-03	ci left: 9.309897e-01	ci right 9.333186e-01	k: 167789	n:180000
KS ci ratio: 1.532403e-01	ci left: 3.344591e-03	ci right 3.904917e-03	k: 651	n:180000
OSBPL2   180000 perm   42 sec   (4291 perm/sec)   p_kst 3.616667e-03   p_cons 9.321611e-01   p_joint 5.540556e-02

Joint ci ratio: 3.713448e-02	ci left: 5.437033e-02	ci right 5.643273e-02	k: 10525	n:190000
Cons ci ratio: 2.423775e-03	ci left: 9.311452e-01	ci right 9.334100e-01	k: 177134	n:190000
KS ci ratio: 1.490687e-01	ci left: 3.355933e-03	ci right 3.901489e-03	k: 688	n:190000
OSBPL2   190000 perm   45 sec   (4230 perm/sec)   p_kst 3.621053e-03   p_cons 9.322842e-01   p_joint 5.539474e-02

Joint ci ratio: 3.620633e-02	ci left: 5.436173e-02	ci right 5.637118e-02	k: 11072	n:200000
Cons ci ratio: 2.363695e-03	ci left: 9.311045e-01	ci right 9.333129e-01	k: 186443	n:200000
KS ci ratio: 1.447209e-01	ci left: 3.390423e-03	ci right 3.924122e-03	k: 730	n:200000
OSBPL2   200000 perm   48 sec   (4170 perm/sec)   p_kst 3.650000e-03   p_cons 9.322150e-01   p_joint 5.536000e-02

Joint ci ratio: 3.527222e-02	ci left: 5.456703e-02	ci right 5.653098e-02	k: 11664	n:210000
Cons ci ratio: 2.309520e-03	ci left: 9.309773e-01	ci right 9.331346e-01	k: 195733	n:210000
KS ci ratio: 1.410994e-01	ci left: 3.403459e-03	ci right 3.924675e-03	k: 768	n:210000
OSBPL2   210000 perm   51 sec   (4111 perm/sec)   p_kst 3.657143e-03   p_cons 9.320619e-01   p_joint 5.554286e-02

Joint ci ratio: 3.442173e-02	ci left: 5.470918e-02	ci right 5.662982e-02	k: 12246	n:220000
Cons ci ratio: 2.260514e-03	ci left: 9.307707e-01	ci right 9.328816e-01	k: 205003	n:220000
KS ci ratio: 1.373956e-01	ci left: 3.433018e-03	ci right 3.943832e-03	k: 810	n:220000
OSBPL2   220000 perm   54 sec   (4053 perm/sec)   p_kst 3.681818e-03   p_cons 9.318318e-01   p_joint 5.566364e-02

Joint ci ratio: 3.364937e-02	ci left: 5.477909e-02	ci right 5.665821e-02	k: 12814	n:230000
Cons ci ratio: 2.208654e-03	ci left: 9.309198e-01	ci right 9.329824e-01	k: 214350	n:230000
KS ci ratio: 1.343647e-01	ci left: 3.439158e-03	ci right 3.938695e-03	k: 847	n:230000
OSBPL2   230000 perm   58 sec   (3997 perm/sec)   p_kst 3.682609e-03   p_cons 9.319565e-01   p_joint 5.571304e-02

Joint ci ratio: 3.290334e-02	ci left: 5.491805e-02	ci right 5.675937e-02	k: 13400	n:240000
Cons ci ratio: 2.160128e-03	ci left: 9.310610e-01	ci right 9.330785e-01	k: 223698	n:240000
KS ci ratio: 1.316753e-01	ci left: 3.436840e-03	ci right 3.925267e-03	k: 882	n:240000
OSBPL2   240000 perm   61 sec   (3943 perm/sec)   p_kst 3.675000e-03   p_cons 9.320750e-01   p_joint 5.583333e-02

Joint ci ratio: 3.227455e-02	ci left: 5.482003e-02	ci right 5.662229e-02	k: 13929	n:250000
Cons ci ratio: 2.117068e-03	ci left: 9.310464e-01	ci right 9.330235e-01	k: 233010	n:250000
KS ci ratio: 1.286499e-01	ci left: 3.461899e-03	ci right 3.941720e-03	k: 924	n:250000
OSBPL2   250000 perm   64 sec   (3890 perm/sec)   p_kst 3.696000e-03   p_cons 9.320400e-01   p_joint 5.571600e-02

Joint ci ratio: 3.261910e-02	ci left: 5.176408e-02	ci right 5.348437e-02	k: 13681	n:260000
Cons ci ratio: 2.078436e-03	ci left: 9.309133e-01	ci right 9.328540e-01	k: 242291	n:260000
KS ci ratio: 1.259546e-01	ci left: 3.477698e-03	ci right 3.948856e-03	k: 964	n:260000
OSBPL2   260000 perm   68 sec   (3838 perm/sec)   p_kst 3.707692e-03   p_cons 9.318885e-01   p_joint 5.261923e-02

Joint ci ratio: 3.156877e-02	ci left: 5.316879e-02	ci right 5.487783e-02	k: 14585	n:270000
Cons ci ratio: 2.039575e-03	ci left: 9.309321e-01	ci right 9.328364e-01	k: 251610	n:270000
KS ci ratio: 1.239804e-01	ci left: 3.460118e-03	ci right 3.921007e-03	k: 995	n:270000
OSBPL2   270000 perm   71 sec   (3786 perm/sec)   p_kst 3.685185e-03   p_cons 9.318889e-01   p_joint 5.401852e-02

Joint ci ratio: 3.096663e-02	ci left: 5.329330e-02	ci right 5.497309e-02	k: 15156	n:280000
Cons ci ratio: 2.003378e-03	ci left: 9.309139e-01	ci right 9.327843e-01	k: 260919	n:280000
KS ci ratio: 1.215627e-01	ci left: 3.475014e-03	ci right 3.928211e-03	k: 1035	n:280000
OSBPL2   280000 perm   75 sec   (3729 perm/sec)   p_kst 3.696429e-03   p_cons 9.318536e-01   p_joint 5.412857e-02

Joint ci ratio: 3.042735e-02	ci left: 5.331022e-02	ci right 5.496077e-02	k: 15698	n:290000
Cons ci ratio: 1.966904e-03	ci left: 9.310361e-01	ci right 9.328725e-01	k: 270268	n:290000
KS ci ratio: 1.197288e-01	ci left: 3.462199e-03	ci right 3.906431e-03	k: 1067	n:290000
OSBPL2   290000 perm   79 sec   (3682 perm/sec)   p_kst 3.679310e-03   p_cons 9.319586e-01   p_joint 5.413103e-02

Joint ci ratio: 2.991334e-02	ci left: 5.333288e-02	ci right 5.495575e-02	k: 16242	n:300000
Cons ci ratio: 1.935398e-03	ci left: 9.309491e-01	ci right 9.327559e-01	k: 279557	n:300000
KS ci ratio: 1.176004e-01	ci left: 3.472935e-03	ci right 3.910072e-03	k: 1106	n:300000
OSBPL2   300000 perm   83 sec   (3625 perm/sec)   p_kst 3.686667e-03   p_cons 9.318567e-01   p_joint 5.414000e-02

Joint ci ratio: 2.940140e-02	ci left: 5.343437e-02	ci right 5.503204e-02	k: 16811	n:310000
Cons ci ratio: 1.905016e-03	ci left: 9.308907e-01	ci right 9.326689e-01	k: 288853	n:310000
KS ci ratio: 1.153294e-01	ci left: 3.498708e-03	ci right 3.930006e-03	k: 1150	n:310000
OSBPL2   310000 perm   87 sec   (3563 perm/sec)   p_kst 3.709677e-03   p_cons 9.317839e-01   p_joint 5.422903e-02

Joint ci ratio: 2.894658e-02	ci left: 5.341801e-02	ci right 5.499007e-02	k: 17344	n:320000
Cons ci ratio: 1.877999e-03	ci left: 9.307010e-01	ci right 9.324536e-01	k: 298106	n:320000
KS ci ratio: 1.135672e-01	ci left: 3.498653e-03	ci right 3.922913e-03	k: 1186	n:320000
OSBPL2   320000 perm   91 sec   (3518 perm/sec)   p_kst 3.706250e-03   p_cons 9.315813e-01   p_joint 5.420000e-02

Joint ci ratio: 2.848445e-02	ci left: 5.350215e-02	ci right 5.505114e-02	k: 17910	n:330000
Cons ci ratio: 1.848921e-03	ci left: 9.307426e-01	ci right 9.324680e-01	k: 307431	n:330000
KS ci ratio: 1.116090e-01	ci left: 3.516323e-03	ci right 3.934890e-03	k: 1228	n:330000
OSBPL2   330000 perm   95 sec   (3477 perm/sec)   p_kst 3.721212e-03   p_cons 9.316091e-01   p_joint 5.427273e-02

Joint ci ratio: 2.842148e-02	ci left: 5.223177e-02	ci right 5.374057e-02	k: 18014	n:340000
Cons ci ratio: 1.822876e-03	ci left: 9.306606e-01	ci right 9.323615e-01	k: 316715	n:340000
KS ci ratio: 1.102285e-01	ci left: 3.501548e-03	ci right 3.912865e-03	k: 1259	n:340000
OSBPL2   340000 perm   99 sec   (3427 perm/sec)   p_kst 3.702941e-03   p_cons 9.315147e-01   p_joint 5.298235e-02

Joint ci ratio: 2.763290e-02	ci left: 5.361965e-02	ci right 5.512489e-02	k: 19029	n:350000
Cons ci ratio: 1.797054e-03	ci left: 9.306438e-01	ci right 9.323205e-01	k: 326020	n:350000
KS ci ratio: 1.087291e-01	ci left: 3.498765e-03	ci right 3.903806e-03	k: 1294	n:350000
OSBPL2   350000 perm   103 sec   (3388 perm/sec)   p_kst 3.697143e-03   p_cons 9.314857e-01   p_joint 5.436857e-02

Joint ci ratio: 2.762279e-02	ci left: 5.224555e-02	ci right 5.371166e-02	k: 19071	n:360000
Cons ci ratio: 1.768749e-03	ci left: 9.308851e-01	ci right 9.325358e-01	k: 335417	n:360000
KS ci ratio: 1.072892e-01	ci left: 3.496172e-03	ci right 3.895215e-03	k: 1329	n:360000
OSBPL2   360000 perm   107 sec   (3350 perm/sec)   p_kst 3.691667e-03   p_cons 9.317139e-01   p_joint 5.297500e-02

Joint ci ratio: 2.686046e-02	ci left: 5.369819e-02	ci right 5.516285e-02	k: 20138	n:370000
Cons ci ratio: 1.746539e-03	ci left: 9.307601e-01	ci right 9.323898e-01	k: 344684	n:370000
KS ci ratio: 1.052875e-01	ci left: 3.535859e-03	ci right 3.931436e-03	k: 1380	n:370000
OSBPL2   370000 perm   112 sec   (3312 perm/sec)   p_kst 3.729730e-03   p_cons 9.315784e-01   p_joint 5.442703e-02

Joint ci ratio: 2.605042e-02	ci left: 5.550381e-02	ci right 5.697138e-02	k: 21369	n:380000
Cons ci ratio: 1.723148e-03	ci left: 9.307901e-01	ci right 9.323980e-01	k: 354007	n:380000
KS ci ratio: 1.040892e-01	ci left: 3.524814e-03	ci right 3.914393e-03	k: 1412	n:380000
OSBPL2   380000 perm   116 sec   (3275 perm/sec)   p_kst 3.715789e-03   p_cons 9.315974e-01   p_joint 5.623421e-02

Joint ci ratio: 2.572694e-02	ci left: 5.546137e-02	ci right 5.690934e-02	k: 21911	n:390000
Cons ci ratio: 1.700911e-03	ci left: 9.308007e-01	ci right 9.323878e-01	k: 363323	n:390000
KS ci ratio: 1.029308e-01	ci left: 3.514360e-03	ci right 3.898200e-03	k: 1444	n:390000
OSBPL2   390000 perm   121 sec   (3236 perm/sec)   p_kst 3.702564e-03   p_cons 9.315974e-01   p_joint 5.618205e-02

Joint ci ratio: 2.541041e-02	ci left: 5.544103e-02	ci right 5.687040e-02	k: 22461	n:400000
Cons ci ratio: 1.680041e-03	ci left: 9.307706e-01	ci right 9.323381e-01	k: 372623	n:400000
KS ci ratio: 1.019490e-01	ci left: 3.494706e-03	ci right 3.872540e-03	k: 1472	n:400000
OSBPL2   400000 perm   125 sec   (3202 perm/sec)   p_kst 3.680000e-03   p_cons 9.315575e-01   p_joint 5.615250e-02

Joint ci ratio: 2.509143e-02	ci left: 5.547999e-02	ci right 5.689215e-02	k: 23035	n:410000
Cons ci ratio: 1.659920e-03	ci left: 9.307421e-01	ci right 9.322908e-01	k: 381923	n:410000
KS ci ratio: 1.006922e-01	ci left: 3.497427e-03	ci right 3.870617e-03	k: 1509	n:410000
OSBPL2   410000 perm   129 sec   (3168 perm/sec)   p_kst 3.680488e-03   p_cons 9.315195e-01   p_joint 5.618293e-02

Joint ci ratio: 2.524340e-02	ci left: 5.361182e-02	ci right 5.498481e-02	k: 22804	n:420000
Cons ci ratio: 1.639495e-03	ci left: 9.307941e-01	ci right 9.323237e-01	k: 391256	n:420000
KS ci ratio: 9.983765e-02	ci left: 3.474505e-03	ci right 3.841919e-03	k: 1535	n:420000
OSBPL2   420000 perm   134 sec   (3134 perm/sec)   p_kst 3.654762e-03   p_cons 9.315619e-01   p_joint 5.429524e-02

Outputting figure to mutsig2_images.part000000000124/OSBPL2.2_1495_420000_0.0036548_0.93156_0.054295.png
                gene_name: OSBPL2
               theta_stop: 0.100 
                    nperm: 420000 
                     p_ks: 0.0037 
        ci_ks_bounds_left: 0.0035 
       ci_ks_bounds_right: 0.0038 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.054 
     ci_joint_bounds_left: 0.054 
    ci_joint_bounds_right: 0.055 

Current progress: 73 percent done.
OSBPL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.101545e-02	ci left: 4.674681e-01	ci right 4.871451e-01	k: 4773	n:10000
Cons ci ratio: 4.031520e-02	ci left: 4.760594e-01	ci right 4.957488e-01	k: 4859	n:10000
KS ci ratio: 8.290783e-02	ci left: 1.750712e-01	ci right 1.903141e-01	k: 1826	n:10000
OSBPL3   10000 perm   2 sec   (6070 perm/sec)   p_kst 1.826000e-01   p_cons 4.859000e-01   p_joint 4.773000e-01

Outputting figure to mutsig2_images.part000000000124/OSBPL3.2_2752_10000_0.1826_0.4859_0.4773.png
                gene_name: OSBPL3
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 76 percent done.
OSBPL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.639762e-02	ci left: 2.003766e-01	ci right 2.163937e-01	k: 2083	n:10000
Cons ci ratio: 1.814227e-01	ci left: 4.054168e-02	ci right 4.872625e-02	k: 445	n:10000
KS ci ratio: 3.708012e-02	ci left: 5.178584e-01	ci right 5.375255e-01	k: 5277	n:10000
OSBPL5   10000 perm   2 sec   (5867 perm/sec)   p_kst 5.277000e-01   p_cons 4.450000e-02   p_joint 2.083000e-01

Joint ci ratio: 3.901843e-02	ci left: 3.288063e-01	ci right 3.419416e-01	k: 6707	n:20000
Cons ci ratio: 1.282881e-01	ci left: 4.173208e-02	ci right 4.750125e-02	k: 891	n:20000
KS ci ratio: 2.625564e-02	ci left: 5.201021e-01	ci right 5.339900e-01	k: 10541	n:20000
OSBPL5   20000 perm   4 sec   (5475 perm/sec)   p_kst 5.270500e-01   p_cons 4.455000e-02   p_joint 3.353500e-01

Joint ci ratio: 4.517450e-02	ci left: 1.960811e-01	ci right 2.051770e-01	k: 6018	n:30000
Cons ci ratio: 1.051596e-01	ci left: 4.193421e-02	ci right 4.662123e-02	k: 1327	n:30000
KS ci ratio: 2.162592e-02	ci left: 5.170293e-01	ci right 5.283663e-01	k: 15681	n:30000
OSBPL5   30000 perm   6 sec   (5257 perm/sec)   p_kst 5.227000e-01   p_cons 4.423333e-02   p_joint 2.006000e-01

Joint ci ratio: 4.038995e-02	ci left: 1.867361e-01	ci right 1.944588e-01	k: 7623	n:40000
Cons ci ratio: 9.074104e-02	ci left: 4.254879e-02	ci right 4.661766e-02	k: 1782	n:40000
KS ci ratio: 1.863986e-02	ci left: 5.201671e-01	ci right 5.299793e-01	k: 21003	n:40000
OSBPL5   40000 perm   8 sec   (5130 perm/sec)   p_kst 5.250750e-01   p_cons 4.455000e-02   p_joint 1.905750e-01

Outputting figure to mutsig2_images.part000000000124/OSBPL5.2_2724_40000_0.52507_0.04455_0.19057.png
                gene_name: OSBPL5
               theta_stop: 0.091 
                    nperm: 40000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.045 
      ci_cons_bounds_left: 0.043 
     ci_cons_bounds_right: 0.047 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.19 

Current progress: 78 percent done.
OSGIN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.875699e-02	ci left: 2.367933e-01	ci right 2.537553e-01	k: 2452	n:10000
KS ci ratio: 3.871893e-02	ci left: 4.962503e-01	ci right 5.159461e-01	k: 5061	n:10000
OSGIN2   10000 perm   1 sec   (6671 perm/sec)   p_kst 5.061000e-01   p_cons 2.452000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000124/OSGIN2.2_1674_10000_0.5061_0.2452_1.png
                gene_name: OSGIN2
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
OSTM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.335719e-03	ci left: 9.418039e-01	ci right 9.507338e-01	k: 9464	n:10000
Cons ci ratio: 9.345829e-02	ci left: 1.425640e-01	ci right 1.566408e-01	k: 1495	n:10000
KS ci ratio: 5.719572e-02	ci left: 3.103647e-01	ci right 3.287406e-01	k: 3195	n:10000
OSTM1   10000 perm   1 sec   (6744 perm/sec)   p_kst 3.195000e-01   p_cons 1.495000e-01   p_joint 9.464000e-01

Outputting figure to mutsig2_images.part000000000124/OSTM1.2_1029_10000_0.3195_0.1495_0.9464.png
                gene_name: OSTM1
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 82 percent done.
OSTN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.469974e-01	ci left: 1.041531e-02	ci right 1.487532e-02	k: 125	n:10000
Cons ci ratio: 4.809000e-01	ci left: 5.020040e-03	ci right 8.277383e-03	k: 65	n:10000
KS ci ratio: 6.129090e-02	ci left: 2.813167e-01	ci right 2.992056e-01	k: 2902	n:10000
OSTN   10000 perm   1 sec   (7450 perm/sec)   p_kst 2.902000e-01   p_cons 6.500000e-03   p_joint 1.250000e-02

Joint ci ratio: 2.515060e-01	ci left: 1.049034e-02	ci right 1.355399e-02	k: 239	n:20000
Cons ci ratio: 3.628969e-01	ci left: 4.749480e-03	ci right 6.898025e-03	k: 115	n:20000
KS ci ratio: 4.400068e-02	ci left: 2.778069e-01	ci right 2.903560e-01	k: 5681	n:20000
OSTN   20000 perm   3 sec   (6551 perm/sec)   p_kst 2.840500e-01   p_cons 5.750000e-03   p_joint 1.195000e-02

Joint ci ratio: 2.912969e-01	ci left: 5.126645e-03	ci right 6.904401e-03	k: 179	n:30000
Cons ci ratio: 3.071465e-01	ci left: 4.571451e-03	ci right 6.259842e-03	k: 161	n:30000
KS ci ratio: 3.623210e-02	ci left: 2.755538e-01	ci right 2.857554e-01	k: 8419	n:30000
OSTN   30000 perm   5 sec   (6240 perm/sec)   p_kst 2.806333e-01   p_cons 5.366667e-03   p_joint 5.966667e-03

Joint ci ratio: 2.334406e-01	ci left: 6.182866e-03	ci right 7.839918e-03	k: 279	n:40000
Cons ci ratio: 2.647682e-01	ci left: 4.728754e-03	ci right 6.194449e-03	k: 217	n:40000
KS ci ratio: 3.144153e-02	ci left: 2.754293e-01	ci right 2.842526e-01	k: 11193	n:40000
OSTN   40000 perm   7 sec   (6054 perm/sec)   p_kst 2.798250e-01   p_cons 5.425000e-03   p_joint 6.975000e-03

Joint ci ratio: 2.174068e-01	ci left: 5.757640e-03	ci right 7.180572e-03	k: 322	n:50000
Cons ci ratio: 2.331873e-01	ci left: 4.964747e-03	ci right 6.293640e-03	k: 280	n:50000
KS ci ratio: 2.817600e-02	ci left: 2.751314e-01	ci right 2.830143e-01	k: 13953	n:50000
OSTN   50000 perm   9 sec   (5873 perm/sec)   p_kst 2.790600e-01   p_cons 5.600000e-03   p_joint 6.440000e-03

Joint ci ratio: 1.993989e-01	ci left: 5.761726e-03	ci right 7.053383e-03	k: 383	n:60000
Cons ci ratio: 2.142160e-01	ci left: 4.955465e-03	ci right 6.159787e-03	k: 332	n:60000
KS ci ratio: 2.568573e-02	ci left: 2.760279e-01	ci right 2.832268e-01	k: 16777	n:60000
OSTN   60000 perm   10 sec   (5738 perm/sec)   p_kst 2.796167e-01   p_cons 5.533333e-03   p_joint 6.383333e-03

Joint ci ratio: 1.848154e-01	ci left: 5.795395e-03	ci right 6.988933e-03	k: 446	n:70000
Cons ci ratio: 1.979418e-01	ci left: 5.019877e-03	ci right 6.135994e-03	k: 389	n:70000
KS ci ratio: 2.382289e-02	ci left: 2.755799e-01	ci right 2.822384e-01	k: 19523	n:70000
OSTN   70000 perm   12 sec   (5627 perm/sec)   p_kst 2.789000e-01   p_cons 5.557143e-03   p_joint 6.371429e-03

Joint ci ratio: 1.703562e-01	ci left: 6.014694e-03	ci right 7.146536e-03	k: 525	n:80000
Cons ci ratio: 1.824432e-01	ci left: 5.213930e-03	ci right 6.272398e-03	k: 458	n:80000
KS ci ratio: 2.226224e-02	ci left: 2.761928e-01	ci right 2.824232e-01	k: 22344	n:80000
OSTN   80000 perm   15 sec   (5498 perm/sec)   p_kst 2.793000e-01   p_cons 5.725000e-03   p_joint 6.562500e-03

Joint ci ratio: 1.616827e-01	ci left: 5.964062e-03	ci right 7.023679e-03	k: 583	n:90000
Cons ci ratio: 1.734294e-01	ci left: 5.154796e-03	ci right 6.144143e-03	k: 507	n:90000
KS ci ratio: 2.101289e-02	ci left: 2.759164e-01	ci right 2.817868e-01	k: 25096	n:90000
OSTN   90000 perm   17 sec   (5399 perm/sec)   p_kst 2.788444e-01   p_cons 5.633333e-03   p_joint 6.477778e-03

Joint ci ratio: 1.530170e-01	ci left: 6.020908e-03	ci right 7.028036e-03	k: 651	n:100000
Cons ci ratio: 1.645948e-01	ci left: 5.175644e-03	ci right 6.113379e-03	k: 563	n:100000
KS ci ratio: 1.998852e-02	ci left: 2.749854e-01	ci right 2.805474e-01	k: 27776	n:100000
OSTN   100000 perm   19 sec   (5293 perm/sec)   p_kst 2.777600e-01   p_cons 5.630000e-03   p_joint 6.510000e-03

Joint ci ratio: 1.471612e-01	ci left: 5.937260e-03	ci right 6.889045e-03	k: 704	n:110000
Cons ci ratio: 1.582748e-01	ci left: 5.106407e-03	ci right 5.992696e-03	k: 609	n:110000
KS ci ratio: 1.907936e-02	ci left: 2.746740e-01	ci right 2.799741e-01	k: 30505	n:110000
OSTN   110000 perm   21 sec   (5160 perm/sec)   p_kst 2.773182e-01   p_cons 5.536364e-03   p_joint 6.400000e-03

Joint ci ratio: 1.396310e-01	ci left: 6.069208e-03	ci right 6.988218e-03	k: 782	n:120000
Cons ci ratio: 1.503433e-01	ci left: 5.209667e-03	ci right 6.064491e-03	k: 675	n:120000
KS ci ratio: 1.823157e-02	ci left: 2.755661e-01	ci right 2.806446e-01	k: 33372	n:120000
OSTN   120000 perm   24 sec   (5065 perm/sec)   p_kst 2.781000e-01   p_cons 5.625000e-03   p_joint 6.516667e-03

Joint ci ratio: 1.338557e-01	ci left: 6.114971e-03	ci right 6.999564e-03	k: 851	n:130000
Cons ci ratio: 1.443792e-01	ci left: 5.231226e-03	ci right 6.052600e-03	k: 732	n:130000
KS ci ratio: 1.753449e-02	ci left: 2.752512e-01	ci right 2.801279e-01	k: 36099	n:130000
OSTN   130000 perm   26 sec   (4952 perm/sec)   p_kst 2.776846e-01   p_cons 5.630769e-03   p_joint 6.546154e-03

Joint ci ratio: 1.299552e-01	ci left: 6.037344e-03	ci right 6.883293e-03	k: 903	n:140000
Cons ci ratio: 1.402379e-01	ci left: 5.160650e-03	ci right 5.945757e-03	k: 776	n:140000
KS ci ratio: 1.689303e-02	ci left: 2.754263e-01	ci right 2.801258e-01	k: 38888	n:140000
OSTN   140000 perm   29 sec   (4860 perm/sec)   p_kst 2.777714e-01   p_cons 5.542857e-03   p_joint 6.450000e-03

Joint ci ratio: 1.258479e-01	ci left: 6.022054e-03	ci right 6.837201e-03	k: 963	n:150000
Cons ci ratio: 1.357700e-01	ci left: 5.151303e-03	ci right 5.908003e-03	k: 828	n:150000
KS ci ratio: 1.631474e-02	ci left: 2.756407e-01	ci right 2.801813e-01	k: 41686	n:150000
OSTN   150000 perm   31 sec   (4770 perm/sec)   p_kst 2.779067e-01   p_cons 5.520000e-03   p_joint 6.420000e-03

Joint ci ratio: 1.226506e-01	ci left: 5.954506e-03	ci right 6.738544e-03	k: 1014	n:160000
Cons ci ratio: 1.320811e-01	ci left: 5.113249e-03	ci right 5.842347e-03	k: 875	n:160000
KS ci ratio: 1.581025e-02	ci left: 2.753693e-01	ci right 2.797638e-01	k: 44410	n:160000
OSTN   160000 perm   34 sec   (4693 perm/sec)   p_kst 2.775625e-01   p_cons 5.468750e-03   p_joint 6.337500e-03

Joint ci ratio: 1.190129e-01	ci left: 5.963630e-03	ci right 6.723941e-03	k: 1077	n:170000
Cons ci ratio: 1.280510e-01	ci left: 5.131167e-03	ci right 5.838800e-03	k: 931	n:170000
KS ci ratio: 1.533543e-02	ci left: 2.755073e-01	ci right 2.797708e-01	k: 47198	n:170000
OSTN   170000 perm   37 sec   (4615 perm/sec)   p_kst 2.776353e-01   p_cons 5.476471e-03   p_joint 6.335294e-03

Joint ci ratio: 1.153253e-01	ci left: 6.009818e-03	ci right 6.750660e-03	k: 1147	n:180000
Cons ci ratio: 1.243055e-01	ci left: 5.152777e-03	ci right 5.841074e-03	k: 988	n:180000
KS ci ratio: 1.490138e-02	ci left: 2.756207e-01	ci right 2.797642e-01	k: 49984	n:180000
OSTN   180000 perm   40 sec   (4528 perm/sec)   p_kst 2.776889e-01   p_cons 5.488889e-03   p_joint 6.372222e-03

Joint ci ratio: 1.126608e-01	ci left: 5.974725e-03	ci right 6.693093e-03	k: 1202	n:190000
Cons ci ratio: 1.214557e-01	ci left: 5.121338e-03	ci right 5.788624e-03	k: 1035	n:190000
KS ci ratio: 1.450335e-02	ci left: 2.756922e-01	ci right 2.797251e-01	k: 52764	n:190000
OSTN   190000 perm   43 sec   (4456 perm/sec)   p_kst 2.777053e-01   p_cons 5.447368e-03   p_joint 6.326316e-03

Joint ci ratio: 1.098220e-01	ci left: 5.982226e-03	ci right 6.682198e-03	k: 1265	n:200000
Cons ci ratio: 1.184091e-01	ci left: 5.127173e-03	ci right 5.777288e-03	k: 1089	n:200000
KS ci ratio: 1.415131e-02	ci left: 2.753138e-01	ci right 2.792426e-01	k: 55455	n:200000
OSTN   200000 perm   46 sec   (4376 perm/sec)   p_kst 2.772750e-01   p_cons 5.445000e-03   p_joint 6.325000e-03

Joint ci ratio: 1.073502e-01	ci left: 5.970678e-03	ci right 6.652581e-03	k: 1324	n:210000
Cons ci ratio: 1.156826e-01	ci left: 5.123390e-03	ci right 5.757045e-03	k: 1141	n:210000
KS ci ratio: 1.381663e-02	ci left: 2.751770e-01	ci right 2.790101e-01	k: 58189	n:210000
OSTN   210000 perm   49 sec   (4304 perm/sec)   p_kst 2.770905e-01   p_cons 5.433333e-03   p_joint 6.304762e-03

Joint ci ratio: 1.049237e-01	ci left: 5.973621e-03	ci right 6.639487e-03	k: 1386	n:220000
Cons ci ratio: 1.128514e-01	ci left: 5.146614e-03	ci right 5.766526e-03	k: 1199	n:220000
KS ci ratio: 1.349697e-02	ci left: 2.752803e-01	ci right 2.790255e-01	k: 60973	n:220000
OSTN   220000 perm   52 sec   (4239 perm/sec)   p_kst 2.771500e-01   p_cons 5.450000e-03   p_joint 6.300000e-03

Joint ci ratio: 1.022647e-01	ci left: 6.023074e-03	ci right 6.676417e-03	k: 1459	n:230000
Cons ci ratio: 1.100426e-01	ci left: 5.184905e-03	ci right 5.792877e-03	k: 1261	n:230000
KS ci ratio: 1.318421e-02	ci left: 2.758096e-01	ci right 2.794743e-01	k: 63857	n:230000
OSTN   230000 perm   55 sec   (4173 perm/sec)   p_kst 2.776391e-01   p_cons 5.482609e-03   p_joint 6.343478e-03

Joint ci ratio: 1.002268e-01	ci left: 6.015781e-03	ci right 6.654563e-03	k: 1519	n:240000
Cons ci ratio: 1.079265e-01	ci left: 5.171520e-03	ci right 5.765520e-03	k: 1311	n:240000
KS ci ratio: 1.290024e-02	ci left: 2.760460e-01	ci right 2.796343e-01	k: 66681	n:240000
OSTN   240000 perm   58 sec   (4109 perm/sec)   p_kst 2.778375e-01   p_cons 5.462500e-03   p_joint 6.329167e-03

Joint ci ratio: 9.855739e-02	ci left: 5.977973e-03	ci right 6.601556e-03	k: 1571	n:250000
Cons ci ratio: 1.061239e-01	ci left: 5.139836e-03	ci right 5.719721e-03	k: 1356	n:250000
KS ci ratio: 1.264848e-02	ci left: 2.758013e-01	ci right 2.793159e-01	k: 69389	n:250000
OSTN   250000 perm   62 sec   (4046 perm/sec)   p_kst 2.775560e-01   p_cons 5.424000e-03   p_joint 6.284000e-03

Joint ci ratio: 9.646196e-02	ci left: 6.006968e-03	ci right 6.619500e-03	k: 1640	n:260000
Cons ci ratio: 1.037413e-01	ci left: 5.178104e-03	ci right 5.748390e-03	k: 1419	n:260000
KS ci ratio: 1.240019e-02	ci left: 2.759215e-01	ci right 2.793681e-01	k: 72187	n:260000
OSTN   260000 perm   65 sec   (3985 perm/sec)   p_kst 2.776423e-01   p_cons 5.457692e-03   p_joint 6.307692e-03

Joint ci ratio: 9.438370e-02	ci left: 6.048412e-03	ci right 6.651147e-03	k: 1713	n:270000
Cons ci ratio: 1.015467e-01	ci left: 5.210061e-03	ci right 5.771005e-03	k: 1481	n:270000
KS ci ratio: 1.217384e-02	ci left: 2.757746e-01	ci right 2.791561e-01	k: 74915	n:270000
OSTN   270000 perm   69 sec   (3928 perm/sec)   p_kst 2.774630e-01   p_cons 5.485185e-03   p_joint 6.344444e-03

Joint ci ratio: 9.282711e-02	ci left: 6.034689e-03	ci right 6.625599e-03	k: 1771	n:280000
Cons ci ratio: 9.981130e-02	ci left: 5.205025e-03	ci right 5.755287e-03	k: 1533	n:280000
KS ci ratio: 1.196051e-02	ci left: 2.756032e-01	ci right 2.789229e-01	k: 77633	n:280000
OSTN   280000 perm   72 sec   (3873 perm/sec)   p_kst 2.772607e-01   p_cons 5.475000e-03   p_joint 6.325000e-03

Outputting figure to mutsig2_images.part000000000124/OSTN.2_412_280000_0.27726_0.005475_0.006325.png
                gene_name: OSTN
               theta_stop: 0.100 
                    nperm: 280000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.0055 
      ci_cons_bounds_left: 0.0052 
     ci_cons_bounds_right: 0.0058 
                  p_joint: 0.0063 
     ci_joint_bounds_left: 0.0060 
    ci_joint_bounds_right: 0.0066 

Current progress: 84 percent done.
OTUD6A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.099836e-02	ci left: 3.618190e-01	ci right 3.808560e-01	k: 3713	n:10000
Cons ci ratio: 6.686115e-02	ci left: 2.471717e-01	ci right 2.643708e-01	k: 2557	n:10000
KS ci ratio: 3.242483e-02	ci left: 5.839977e-01	ci right 6.033477e-01	k: 5937	n:10000
OTUD6A   10000 perm   1 sec   (7226 perm/sec)   p_kst 5.937000e-01   p_cons 2.557000e-01   p_joint 3.713000e-01

Outputting figure to mutsig2_images.part000000000124/OTUD6A.2_871_10000_0.5937_0.2557_0.3713.png
                gene_name: OTUD6A
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 87 percent done.
OTUD6B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.541488e-03	ci left: 9.900531e-01	ci right 9.936515e-01	k: 9920	n:10000
Cons ci ratio: 6.079590e-03	ci left: 9.734446e-01	ci right 9.794734e-01	k: 9766	n:10000
KS ci ratio: 1.206707e-02	ci left: 9.078193e-01	ci right 9.189385e-01	k: 9135	n:10000
OTUD6B   10000 perm   1 sec   (6993 perm/sec)   p_kst 9.135000e-01   p_cons 9.766000e-01   p_joint 9.920000e-01

Outputting figure to mutsig2_images.part000000000124/OTUD6B.2_1000_10000_0.9135_0.9766_0.992.png
                gene_name: OTUD6B
               theta_stop: 0.012 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 89 percent done.
OVOL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.013503e-02	ci left: 6.189430e-01	ci right 6.379821e-01	k: 6285	n:10000
Cons ci ratio: 4.468541e-02	ci left: 4.250540e-01	ci right 4.445840e-01	k: 4348	n:10000
KS ci ratio: 4.198116e-02	ci left: 4.558845e-01	ci right 4.755355e-01	k: 4657	n:10000
OVOL2   10000 perm   1 sec   (7076 perm/sec)   p_kst 4.657000e-01   p_cons 4.348000e-01   p_joint 6.285000e-01

Outputting figure to mutsig2_images.part000000000124/OVOL2.2_844_10000_0.4657_0.4348_0.6285.png
                gene_name: OVOL2
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 91 percent done.
OXA1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.454018e-02	ci left: 8.725497e-01	ci right 8.854286e-01	k: 8791	n:10000
KS ci ratio: 3.090770e-02	ci left: 6.069875e-01	ci right 6.261445e-01	k: 6166	n:10000
OXA1L   10000 perm   1 sec   (6789 perm/sec)   p_kst 6.166000e-01   p_cons 8.791000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000124/OXA1L.2_1528_10000_0.6166_0.8791_1.png
                gene_name: OXA1L
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
OXGR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.874991e-02	ci left: 4.958504e-01	ci right 5.155463e-01	k: 5057	n:10000
Cons ci ratio: 4.155349e-02	ci left: 4.609766e-01	ci right 4.806404e-01	k: 4708	n:10000
KS ci ratio: 3.159149e-02	ci left: 5.965440e-01	ci right 6.157941e-01	k: 6062	n:10000
OXGR1   10000 perm   1 sec   (6806 perm/sec)   p_kst 6.062000e-01   p_cons 4.708000e-01   p_joint 5.057000e-01

Outputting figure to mutsig2_images.part000000000124/OXGR1.2_1018_10000_0.6062_0.4708_0.5057.png
                gene_name: OXGR1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 96 percent done.
OXNAD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.010768e-02	ci left: 7.836063e-01	ci right 7.996234e-01	k: 7917	n:10000
Cons ci ratio: 2.436572e-02	ci left: 7.123987e-01	ci right 7.300722e-01	k: 7213	n:10000
KS ci ratio: 9.982218e-02	ci left: 1.268913e-01	ci right 1.403229e-01	k: 1335	n:10000
OXNAD1   10000 perm   1 sec   (7531 perm/sec)   p_kst 1.335000e-01   p_cons 7.213000e-01   p_joint 7.917000e-01

Outputting figure to mutsig2_images.part000000000124/OXNAD1.2_967_10000_0.1335_0.7213_0.7917.png
                gene_name: OXNAD1
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 98 percent done.
OXR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.414416e-02	ci left: 4.310375e-01	ci right 4.505970e-01	k: 4408	n:10000
Cons ci ratio: 8.290783e-02	ci left: 1.750712e-01	ci right 1.903141e-01	k: 1826	n:10000
KS ci ratio: 4.762296e-02	ci left: 3.941625e-01	ci right 4.134936e-01	k: 4038	n:10000
OXR1   10000 perm   2 sec   (6280 perm/sec)   p_kst 4.038000e-01   p_cons 1.826000e-01   p_joint 4.408000e-01

Outputting figure to mutsig2_images.part000000000124/OXR1.2_2804_10000_0.4038_0.1826_0.4408.png
                gene_name: OXR1
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000124
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 124 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1535>
Subject: Job 8004355: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1535>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000125> was used as the working directory.
Started at Sun Nov 11 15:11:14 2012
Results reported at Sun Nov 11 15:50:26 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000125.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000125.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 125  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000125.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   2667.92 sec.
    Max Memory :      4708 MB
    Max Swap   :      7060 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
125
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 125
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 125: processing genes 11219 - 11309
Calculating significance of each gene.
Using projection method.
11219	P2RX5	1
11220	P2RX6	1
11221	P2RX7	6.240173e-01
11222	P2RY1	1.652195e-01
11223	P2RY10	7.225462e-02
11224	P2RY11	1
11225	P2RY12	1
11226	P2RY13	4.503007e-01
11227	P2RY14	1.018787e-01
11228	P2RY2	1.852234e-01
11229	P2RY4	4.837115e-01
11230	P2RY6	4.320569e-01
11231	P2RY8	1
11232	P4HA1	7.217644e-01
11233	P4HA2	3.992761e-01
11234	P4HA3	2.828080e-01
11235	P4HB	1.468363e-01
11236	P4HTM	4.898351e-01
11237	PA2G4	5.674433e-01
11238	PAAF1	4.156850e-01
11239	PABPC1	2.480571e-01
11240	PABPC1L	4.504985e-01
11241	PABPC3	2.030757e-02
11242	PABPC4	7.578334e-01
11243	PABPC5	5.029087e-02
11244	PABPN1	1
11245	PABPN1L	1
11246	PACRG	3.031189e-01
11247	PACRGL	5.969527e-04
11248	PACS1	8.099496e-01
11249	PACS2	3.462785e-01
11250	PACSIN1	2.315670e-01
11251	PACSIN2	8.053184e-01
11252	PACSIN3	1
11253	PADI1	4.286243e-02
11254	PADI2	6.032631e-01
11255	PADI3	7.844200e-01
11256	PADI4	1
11257	PADI6	7.069221e-01
11258	PAEP	1
11259	PAF1	7.948771e-01
11260	PAFAH1B1	8.136664e-01
11261	PAFAH1B2	1
11262	PAFAH1B3	1
11263	PAFAH2	1
11264	PAG1	1
11265	PAGE1	1.334684e-01
11266	PAGE2	1
11267	PAGE2B	1.979163e-01
11268	PAGE4	1
11269	PAGE5	1.118560e-01
11270	PAH	2.426187e-01
11271	PAICS	1
11272	PAIP1	1
11273	PAIP2	1
11274	PAIP2B	1
11275	PAK1	5.352689e-01
11276	PAK1IP1	1
11277	PAK2	8.062018e-01
11278	PAK3	8.764323e-01
11279	PAK4	6.265377e-01
11280	PAK6	1
11281	PAK7	1
11282	PALB2	5.310812e-01
11283	PALLD	1
11284	PALM	1
11285	PALM2	1
11286	PALM2-AKAP2	9.712987e-01
11287	PALMD	5.987934e-01
11288	PAM	7.415347e-01
11289	PAMR1	1
11290	PAN2	9.835424e-01
11291	PAN3	3.630631e-01
11292	PANK1	7.913274e-01
11293	PANK2	7.372295e-01
11294	PANK3	6.245760e-01
11295	PANK4	9.110548e-01
11296	PANX1	1.736005e-01
11297	PANX2	1
11298	PANX3	8.500685e-02
11299	PAOX	7.222556e-02
11300	PAPD4	6.456353e-01
11301	PAPD5	5.203773e-01
11302	PAPD7	2.271115e-01
11303	PAPL	7.322943e-01
11304	PAPLN	9.131758e-01
11305	PAPOLA	8.633780e-01
11306	PAPOLB	4.161370e-02
11307	PAPOLG	6.198794e-01
11308	PAPPA	9.344272e-01
11309	PAPPA2	9.834895e-01
Done

Running MutSig 2:
Scatter job 125: processing genes 11219 - 11309
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
PAPPA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.470164e-02	ci left: 2.597333e-01	ci right 2.772017e-01	k: 2684	n:10000
Cons ci ratio: 6.679098e-02	ci left: 2.475672e-01	ci right 2.647751e-01	k: 2561	n:10000
KS ci ratio: 7.724115e-02	ci left: 1.968288e-01	ci right 2.127436e-01	k: 2047	n:10000
PAPPA2   10000 perm   4 sec   (2578 perm/sec)   p_kst 2.047000e-01   p_cons 2.561000e-01   p_joint 2.684000e-01

Outputting figure to mutsig2_images.part000000000125/PAPPA2.41_5517_10000_0.2047_0.2561_0.2684.png
                gene_name: PAPPA2
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 2 percent done.
PABPC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.942915e-02	ci left: 7.948639e-01	ci right 8.105594e-01	k: 8028	n:10000
Cons ci ratio: 4.795085e-02	ci left: 3.908763e-01	ci right 4.101817e-01	k: 4005	n:10000
KS ci ratio: 1.282242e-02	ci left: 8.974420e-01	ci right 9.091219e-01	k: 9034	n:10000
PABPC3   10000 perm   2 sec   (4937 perm/sec)   p_kst 9.034000e-01   p_cons 4.005000e-01   p_joint 8.028000e-01

Outputting figure to mutsig2_images.part000000000125/PABPC3.9_1900_10000_0.9034_0.4005_0.8028.png
                gene_name: PABPC3
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 4 percent done.
PAPPA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.377486e-02	ci left: 3.375666e-01	ci right 3.563226e-01	k: 3469	n:10000
Cons ci ratio: 4.745527e-02	ci left: 3.958555e-01	ci right 4.151996e-01	k: 4055	n:10000
KS ci ratio: 8.232947e-02	ci left: 1.771369e-01	ci right 1.924471e-01	k: 1847	n:10000
PAPPA   10000 perm   3 sec   (3994 perm/sec)   p_kst 1.847000e-01   p_cons 4.055000e-01   p_joint 3.469000e-01

Outputting figure to mutsig2_images.part000000000125/PAPPA.8_4972_10000_0.1847_0.4055_0.3469.png
                gene_name: PAPPA
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 6 percent done.
PADI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.029456e-02	ci left: 2.880544e-01	ci right 3.060640e-01	k: 2970	n:10000
Cons ci ratio: 1.325683e-01	ci left: 7.504646e-02	ci right 8.579947e-02	k: 803	n:10000
KS ci ratio: 1.839213e-02	ci left: 8.119208e-01	ci right 8.270926e-01	k: 8196	n:10000
PADI1   10000 perm   2 sec   (5380 perm/sec)   p_kst 8.196000e-01   p_cons 8.030000e-02   p_joint 2.970000e-01

Joint ci ratio: 4.622771e-02	ci left: 2.582976e-01	ci right 2.705710e-01	k: 5288	n:20000
Cons ci ratio: 9.467332e-02	ci left: 7.520025e-02	ci right 8.272270e-02	k: 1578	n:20000
KS ci ratio: 1.290133e-02	ci left: 8.165765e-01	ci right 8.272298e-01	k: 16439	n:20000
PADI1   20000 perm   4 sec   (4803 perm/sec)   p_kst 8.219500e-01   p_cons 7.890000e-02   p_joint 2.644000e-01

Outputting figure to mutsig2_images.part000000000125/PADI1.7_2056_20000_0.82195_0.0789_0.2644.png
                gene_name: PADI1
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.079 
      ci_cons_bounds_left: 0.075 
     ci_cons_bounds_right: 0.083 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 8 percent done.
PAK7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.898176e-01	ci left: 3.700694e-02	ci right 4.486335e-02	k: 408	n:10000
Cons ci ratio: 2.911757e-01	ci left: 1.520682e-02	ci right 2.047941e-02	k: 177	n:10000
KS ci ratio: 1.500300e-01	ci left: 5.908749e-02	ci right 6.876845e-02	k: 638	n:10000
PAK7   10000 perm   2 sec   (5639 perm/sec)   p_kst 6.380000e-02   p_cons 1.770000e-02   p_joint 4.080000e-02

Joint ci ratio: 1.376830e-01	ci left: 3.626248e-02	ci right 4.167261e-02	k: 778	n:20000
Cons ci ratio: 2.092125e-01	ci left: 1.544355e-02	ci right 1.909873e-02	k: 344	n:20000
KS ci ratio: 1.051694e-01	ci left: 6.152427e-02	ci right 6.840287e-02	k: 1298	n:20000
PAK7   20000 perm   4 sec   (5024 perm/sec)   p_kst 6.490000e-02   p_cons 1.720000e-02   p_joint 3.890000e-02

Joint ci ratio: 1.707387e-01	ci left: 1.579092e-02	ci right 1.877029e-02	k: 517	n:30000
Cons ci ratio: 1.715833e-01	ci left: 1.563128e-02	ci right 1.859663e-02	k: 512	n:30000
KS ci ratio: 8.520659e-02	ci left: 6.308525e-02	ci right 6.873250e-02	k: 1976	n:30000
PAK7   30000 perm   6 sec   (4783 perm/sec)   p_kst 6.586667e-02   p_cons 1.706667e-02   p_joint 1.723333e-02

Joint ci ratio: 1.532193e-01	ci left: 1.486526e-02	ci right 1.735571e-02	k: 643	n:40000
Cons ci ratio: 1.478284e-01	ci left: 1.599668e-02	ci right 1.857408e-02	k: 690	n:40000
KS ci ratio: 7.346369e-02	ci left: 6.400365e-02	ci right 6.890952e-02	k: 2657	n:40000
PAK7   40000 perm   9 sec   (4627 perm/sec)   p_kst 6.642500e-02   p_cons 1.725000e-02   p_joint 1.607500e-02

Joint ci ratio: 1.102500e-01	ci left: 2.329882e-02	ci right 2.603675e-02	k: 1232	n:50000
Cons ci ratio: 1.206976e-01	ci left: 1.941168e-02	ci right 2.192440e-02	k: 1032	n:50000
KS ci ratio: 6.556549e-02	ci left: 6.452826e-02	ci right 6.892220e-02	k: 3335	n:50000
PAK7   50000 perm   11 sec   (4503 perm/sec)   p_kst 6.670000e-02   p_cons 2.064000e-02   p_joint 2.464000e-02

Joint ci ratio: 9.125976e-02	ci left: 2.847020e-02	ci right 3.120886e-02	k: 1789	n:60000
Cons ci ratio: 1.108961e-01	ci left: 1.926757e-02	ci right 2.154582e-02	k: 1223	n:60000
KS ci ratio: 6.012047e-02	ci left: 6.417395e-02	ci right 6.816813e-02	k: 3969	n:60000
PAK7   60000 perm   14 sec   (4379 perm/sec)   p_kst 6.615000e-02   p_cons 2.038333e-02   p_joint 2.981667e-02

Joint ci ratio: 9.518185e-02	ci left: 2.252997e-02	ci right 2.479546e-02	k: 1655	n:70000
Cons ci ratio: 1.027802e-01	ci left: 1.930985e-02	ci right 2.141589e-02	k: 1424	n:70000
KS ci ratio: 5.529520e-02	ci left: 6.513047e-02	ci right 6.884837e-02	k: 4688	n:70000
PAK7   70000 perm   16 sec   (4285 perm/sec)   p_kst 6.697143e-02   p_cons 2.034286e-02   p_joint 2.364286e-02

Joint ci ratio: 8.420505e-02	ci left: 2.526327e-02	ci right 2.749626e-02	k: 2109	n:80000
Cons ci ratio: 9.609916e-02	ci left: 1.939497e-02	ci right 2.136503e-02	k: 1629	n:80000
KS ci ratio: 5.153793e-02	ci left: 6.569684e-02	ci right 6.918461e-02	k: 5394	n:80000
PAK7   80000 perm   19 sec   (4203 perm/sec)   p_kst 6.742500e-02   p_cons 2.036250e-02   p_joint 2.636250e-02

Outputting figure to mutsig2_images.part000000000125/PAK7.6_2192_80000_0.067425_0.020362_0.026363.png
                gene_name: PAK7
               theta_stop: 0.096 
                    nperm: 80000 
                     p_ks: 0.067 
        ci_ks_bounds_left: 0.066 
       ci_ks_bounds_right: 0.069 
                   p_cons: 0.020 
      ci_cons_bounds_left: 0.019 
     ci_cons_bounds_right: 0.021 
                  p_joint: 0.026 
     ci_joint_bounds_left: 0.025 
    ci_joint_bounds_right: 0.027 

Current progress: 10 percent done.
PAPOLB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.405090e-02	ci left: 7.176482e-01	ci right 7.352197e-01	k: 7265	n:10000
Cons ci ratio: 2.055786e-02	ci left: 7.761063e-01	ci right 7.923278e-01	k: 7843	n:10000
KS ci ratio: 3.597175e-02	ci left: 5.329749e-01	ci right 5.526002e-01	k: 5428	n:10000
PAPOLB   10000 perm   2 sec   (5461 perm/sec)   p_kst 5.428000e-01   p_cons 7.843000e-01   p_joint 7.265000e-01

Outputting figure to mutsig2_images.part000000000125/PAPOLB.6_1918_10000_0.5428_0.7843_0.7265.png
                gene_name: PAPOLB
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 12 percent done.
P2RY10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.573716e-02	ci left: 4.136894e-01	ci right 4.331553e-01	k: 4234	n:10000
Cons ci ratio: 1.282789e-01	ci left: 7.989663e-02	ci right 9.094628e-02	k: 853	n:10000
KS ci ratio: 1.281508e-02	ci left: 8.975446e-01	ci right 9.092192e-01	k: 9035	n:10000
P2RY10   10000 perm   2 sec   (5661 perm/sec)   p_kst 9.035000e-01   p_cons 8.530000e-02   p_joint 4.234000e-01

Joint ci ratio: 4.179761e-02	ci left: 2.990205e-01	ci right 3.118361e-01	k: 6108	n:20000
Cons ci ratio: 9.053494e-02	ci left: 8.180703e-02	ci right 8.961391e-02	k: 1713	n:20000
KS ci ratio: 9.153403e-03	ci left: 8.974903e-01	ci right 9.057925e-01	k: 18034	n:20000
P2RY10   20000 perm   4 sec   (5078 perm/sec)   p_kst 9.017000e-01   p_cons 8.565000e-02   p_joint 3.054000e-01

Outputting figure to mutsig2_images.part000000000125/P2RY10.5_1024_20000_0.9017_0.08565_0.3054.png
                gene_name: P2RY10
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.086 
      ci_cons_bounds_left: 0.082 
     ci_cons_bounds_right: 0.090 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 15 percent done.
PACRGL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.859839e-02	ci left: 6.431744e-01	ci right 6.619367e-01	k: 6526	n:10000
Cons ci ratio: 6.254881e-02	ci left: 2.730962e-01	ci right 2.908310e-01	k: 2819	n:10000
KS ci ratio: 3.386992e-02	ci left: 5.627338e-01	ci right 5.822240e-01	k: 5725	n:10000
PACRGL   10000 perm   2 sec   (5898 perm/sec)   p_kst 5.725000e-01   p_cons 2.819000e-01   p_joint 6.526000e-01

Outputting figure to mutsig2_images.part000000000125/PACRGL.5_694_10000_0.5725_0.2819_0.6526.png
                gene_name: PACRGL
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 17 percent done.
PALB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.639408e-02	ci left: 5.271675e-01	ci right 5.468110e-01	k: 5370	n:10000
Cons ci ratio: 3.123541e-02	ci left: 6.019660e-01	ci right 6.211689e-01	k: 6116	n:10000
KS ci ratio: 6.853489e-02	ci left: 2.379790e-01	ci right 2.549689e-01	k: 2464	n:10000
PALB2   10000 perm   2 sec   (4902 perm/sec)   p_kst 2.464000e-01   p_cons 6.116000e-01   p_joint 5.370000e-01

Outputting figure to mutsig2_images.part000000000125/PALB2.5_3613_10000_0.2464_0.6116_0.537.png
                gene_name: PALB2
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 19 percent done.
PAN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.312049e-02	ci left: 7.332037e-01	ci right 7.504552e-01	k: 7419	n:10000
KS ci ratio: 9.141221e-03	ci left: 9.439858e-01	ci right 9.527507e-01	k: 9485	n:10000
PAN2   10000 perm   2 sec   (4542 perm/sec)   p_kst 9.485000e-01   p_cons 7.419000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000125/PAN2.5_3709_10000_0.9485_0.7419_1.png
                gene_name: PAN2
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 21 percent done.
PAOX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.480061e-02	ci left: 2.591396e-01	ci right 2.765958e-01	k: 2678	n:10000
Cons ci ratio: 8.469983e-02	ci left: 1.688761e-01	ci right 1.839129e-01	k: 1763	n:10000
KS ci ratio: 5.925716e-02	ci left: 2.952901e-01	ci right 3.134240e-01	k: 3043	n:10000
PAOX   10000 perm   2 sec   (5666 perm/sec)   p_kst 3.043000e-01   p_cons 1.763000e-01   p_joint 2.678000e-01

Outputting figure to mutsig2_images.part000000000125/PAOX.5_1647_10000_0.3043_0.1763_0.2678.png
                gene_name: PAOX
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 23 percent done.
PAPLN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.358687e-02	ci left: 8.865717e-01	ci right 8.987985e-01	k: 8928	n:10000
KS ci ratio: 3.105821e-02	ci left: 6.046775e-01	ci right 6.238559e-01	k: 6143	n:10000
PAPLN   10000 perm   2 sec   (4482 perm/sec)   p_kst 6.143000e-01   p_cons 8.928000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000125/PAPLN.5_3856_10000_0.6143_0.8928_1.png
                gene_name: PAPLN
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 25 percent done.
P4HB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.899674e-02	ci left: 6.368375e-01	ci right 6.556772e-01	k: 6463	n:10000
Cons ci ratio: 1.055229e-02	ci left: 9.274055e-01	ci right 9.373408e-01	k: 9325	n:10000
KS ci ratio: 7.094230e-02	ci left: 2.255330e-01	ci right 2.422223e-01	k: 2338	n:10000
P4HB   10000 perm   2 sec   (6068 perm/sec)   p_kst 2.338000e-01   p_cons 9.325000e-01   p_joint 6.463000e-01

Outputting figure to mutsig2_images.part000000000125/P4HB.4_1571_10000_0.2338_0.9325_0.6463.png
                gene_name: P4HB
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 27 percent done.
P4HTM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.600800e-02	ci left: 5.324742e-01	ci right 5.521012e-01	k: 5423	n:10000
Cons ci ratio: 6.275020e-02	ci left: 2.718089e-01	ci right 2.895190e-01	k: 2806	n:10000
KS ci ratio: 5.076980e-02	ci left: 3.639075e-01	ci right 3.829663e-01	k: 3734	n:10000
P4HTM   10000 perm   2 sec   (5981 perm/sec)   p_kst 3.734000e-01   p_cons 2.806000e-01   p_joint 5.423000e-01

Outputting figure to mutsig2_images.part000000000125/P4HTM.4_1728_10000_0.3734_0.2806_0.5423.png
                gene_name: P4HTM
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 29 percent done.
PABPC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.208438e-02	ci left: 1.780224e-01	ci right 1.933612e-01	k: 1856	n:10000
Cons ci ratio: 7.231530e-02	ci left: 2.188203e-01	ci right 2.353390e-01	k: 2270	n:10000
KS ci ratio: 8.686029e-02	ci left: 1.618004e-01	ci right 1.765928e-01	k: 1691	n:10000
PABPC1   10000 perm   2 sec   (5286 perm/sec)   p_kst 1.691000e-01   p_cons 2.270000e-01   p_joint 1.856000e-01

Outputting figure to mutsig2_images.part000000000125/PABPC1.4_1967_10000_0.1691_0.227_0.1856.png
                gene_name: PABPC1
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 31 percent done.
PABPC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.740117e-02	ci left: 5.135553e-01	ci right 5.332311e-01	k: 5234	n:10000
Cons ci ratio: 4.321626e-02	ci left: 4.415122e-01	ci right 4.611162e-01	k: 4513	n:10000
KS ci ratio: 4.137052e-02	ci left: 4.631735e-01	ci right 4.828422e-01	k: 4730	n:10000
PABPC5   10000 perm   2 sec   (6367 perm/sec)   p_kst 4.730000e-01   p_cons 4.513000e-01   p_joint 5.234000e-01

Outputting figure to mutsig2_images.part000000000125/PABPC5.4_1153_10000_0.473_0.4513_0.5234.png
                gene_name: PABPC5
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 33 percent done.
PACS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.608005e-02	ci left: 2.516216e-01	ci right 2.689183e-01	k: 2602	n:10000
Cons ci ratio: 5.681654e-02	ci left: 3.132420e-01	ci right 3.316615e-01	k: 3224	n:10000
KS ci ratio: 8.795749e-02	ci left: 1.583626e-01	ci right 1.730327e-01	k: 1656	n:10000
PACS2   10000 perm   2 sec   (5096 perm/sec)   p_kst 1.656000e-01   p_cons 3.224000e-01   p_joint 2.602000e-01

Outputting figure to mutsig2_images.part000000000125/PACS2.4_2778_10000_0.1656_0.3224_0.2602.png
                gene_name: PACS2
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 35 percent done.
PALM2-AKAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.493380e-02	ci left: 3.280320e-01	ci right 3.466628e-01	k: 3373	n:10000
Cons ci ratio: 1.219088e-01	ci left: 8.796014e-02	ci right 9.947780e-02	k: 936	n:10000
KS ci ratio: 7.863244e-03	ci left: 9.574375e-01	ci right 9.650907e-01	k: 9614	n:10000
PALM2-AKAP2   10000 perm   2 sec   (4789 perm/sec)   p_kst 9.614000e-01   p_cons 9.360000e-02   p_joint 3.373000e-01

Joint ci ratio: 2.766114e-02	ci left: 4.940458e-01	ci right 5.079539e-01	k: 10020	n:20000
Cons ci ratio: 8.186402e-02	ci left: 9.862400e-02	ci right 1.070919e-01	k: 2056	n:20000
KS ci ratio: 5.792244e-03	ci left: 9.553340e-01	ci right 9.609318e-01	k: 19164	n:20000
PALM2-AKAP2   20000 perm   5 sec   (4297 perm/sec)   p_kst 9.582000e-01   p_cons 1.028000e-01   p_joint 5.010000e-01

Outputting figure to mutsig2_images.part000000000125/PALM2-AKAP2.4_3356_20000_0.9582_0.1028_0.501.png
                gene_name: PALM2-AKAP2
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.099 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 38 percent done.
PAN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.588080e-02	ci left: 3.204868e-01	ci right 3.390125e-01	k: 3297	n:10000
Cons ci ratio: 3.159149e-02	ci left: 5.965440e-01	ci right 6.157941e-01	k: 6062	n:10000
KS ci ratio: 8.582440e-02	ci left: 1.651411e-01	ci right 1.800501e-01	k: 1725	n:10000
PAN3   10000 perm   2 sec   (5128 perm/sec)   p_kst 1.725000e-01   p_cons 6.062000e-01   p_joint 3.297000e-01

Outputting figure to mutsig2_images.part000000000125/PAN3.4_2740_10000_0.1725_0.6062_0.3297.png
                gene_name: PAN3
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 40 percent done.
PANX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.375241e-02	ci left: 4.354264e-01	ci right 4.550056e-01	k: 4452	n:10000
Cons ci ratio: 4.446792e-02	ci left: 4.274473e-01	ci right 4.469893e-01	k: 4372	n:10000
KS ci ratio: 6.133555e-02	ci left: 2.810196e-01	ci right 2.989030e-01	k: 2899	n:10000
PANX1   10000 perm   2 sec   (5878 perm/sec)   p_kst 2.899000e-01   p_cons 4.372000e-01   p_joint 4.452000e-01

Outputting figure to mutsig2_images.part000000000125/PANX1.4_1301_10000_0.2899_0.4372_0.4452.png
                gene_name: PANX1
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 42 percent done.
PANX3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.903667e-02	ci left: 2.353112e-01	ci right 2.522383e-01	k: 2437	n:10000
Cons ci ratio: 4.731777e-02	ci left: 3.972498e-01	ci right 4.166044e-01	k: 4069	n:10000
KS ci ratio: 1.472195e-01	ci left: 6.130724e-02	ci right 7.114729e-02	k: 661	n:10000
PANX3   10000 perm   2 sec   (6005 perm/sec)   p_kst 6.610000e-02   p_cons 4.069000e-01   p_joint 2.437000e-01

Joint ci ratio: 8.173122e-02	ci left: 9.891852e-02	ci right 1.073972e-01	k: 2062	n:20000
Cons ci ratio: 3.348268e-02	ci left: 3.997814e-01	ci right 4.134457e-01	k: 8132	n:20000
KS ci ratio: 1.062673e-01	ci left: 6.030523e-02	ci right 6.712229e-02	k: 1273	n:20000
PANX3   20000 perm   4 sec   (5409 perm/sec)   p_kst 6.365000e-02   p_cons 4.066000e-01   p_joint 1.031000e-01

Joint ci ratio: 6.997469e-02	ci left: 9.137660e-02	ci right 9.803546e-02	k: 2840	n:30000
Cons ci ratio: 2.741693e-02	ci left: 3.996707e-01	ci right 4.108143e-01	k: 12157	n:30000
KS ci ratio: 8.740425e-02	ci left: 6.008051e-02	ci right 6.560452e-02	k: 1884	n:30000
PANX3   30000 perm   6 sec   (5165 perm/sec)   p_kst 6.280000e-02   p_cons 4.052333e-01   p_joint 9.466667e-02

Outputting figure to mutsig2_images.part000000000125/PANX3.4_1195_30000_0.0628_0.40523_0.094667.png
                gene_name: PANX3
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.063 
        ci_ks_bounds_left: 0.060 
       ci_ks_bounds_right: 0.066 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.095 
     ci_joint_bounds_left: 0.091 
    ci_joint_bounds_right: 0.098 

Current progress: 44 percent done.
PAPD7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.760380e-02	ci left: 8.247294e-01	ci right 8.394766e-01	k: 8322	n:10000
KS ci ratio: 8.664246e-03	ci left: 9.491889e-01	ci right 9.575444e-01	k: 9535	n:10000
PAPD7   10000 perm   2 sec   (5693 perm/sec)   p_kst 9.535000e-01   p_cons 8.322000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000125/PAPD7.4_1677_10000_0.9535_0.8322_1.png
                gene_name: PAPD7
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 46 percent done.
P2RY1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.401317e-02	ci left: 1.410934e-01	ci right 1.551123e-01	k: 1480	n:10000
Cons ci ratio: 5.549126e-02	ci left: 3.235641e-01	ci right 3.421333e-01	k: 3328	n:10000
KS ci ratio: 1.026335e-01	ci left: 1.207287e-01	ci right 1.338892e-01	k: 1272	n:10000
P2RY1   10000 perm   2 sec   (6453 perm/sec)   p_kst 1.272000e-01   p_cons 3.328000e-01   p_joint 1.480000e-01

Joint ci ratio: 5.049544e-02	ci left: 2.256687e-01	ci right 2.374094e-01	k: 4630	n:20000
Cons ci ratio: 3.798259e-02	ci left: 3.408484e-01	ci right 3.540959e-01	k: 6949	n:20000
KS ci ratio: 7.131177e-02	ci left: 1.265498e-01	ci right 1.359577e-01	k: 2624	n:20000
P2RY1   20000 perm   4 sec   (5550 perm/sec)   p_kst 1.312000e-01   p_cons 3.474500e-01   p_joint 2.315000e-01

Outputting figure to mutsig2_images.part000000000125/P2RY1.3_1126_20000_0.1312_0.34745_0.2315.png
                gene_name: P2RY1
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 48 percent done.
P2RY14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.159900e-03	ci left: 9.641510e-01	ci right 9.711731e-01	k: 9678	n:10000
Cons ci ratio: 2.858578e-02	ci left: 6.433756e-01	ci right 6.621354e-01	k: 6528	n:10000
KS ci ratio: 4.176252e-02	ci left: 4.584803e-01	ci right 4.781381e-01	k: 4683	n:10000
P2RY14   10000 perm   2 sec   (6233 perm/sec)   p_kst 4.683000e-01   p_cons 6.528000e-01   p_joint 9.678000e-01

Outputting figure to mutsig2_images.part000000000125/P2RY14.3_1021_10000_0.4683_0.6528_0.9678.png
                gene_name: P2RY14
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 50 percent done.
P2RY2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.823153e-02	ci left: 3.880884e-01	ci right 4.073712e-01	k: 3977	n:10000
Cons ci ratio: 1.400983e-01	ci left: 6.749259e-02	ci right 7.775805e-02	k: 725	n:10000
KS ci ratio: 2.691388e-02	ci left: 6.703529e-01	ci right 6.887424e-01	k: 6796	n:10000
P2RY2   10000 perm   2 sec   (6159 perm/sec)   p_kst 6.796000e-01   p_cons 7.250000e-02   p_joint 3.977000e-01

Joint ci ratio: 5.176965e-02	ci left: 2.169990e-01	ci right 2.285817e-01	k: 4455	n:20000
Cons ci ratio: 1.001870e-01	ci left: 6.752704e-02	ci right 7.469825e-02	k: 1421	n:20000
KS ci ratio: 1.937335e-02	ci left: 6.652428e-01	ci right 6.783073e-01	k: 13436	n:20000
P2RY2   20000 perm   4 sec   (5441 perm/sec)   p_kst 6.718000e-01   p_cons 7.105000e-02   p_joint 2.227500e-01

Joint ci ratio: 4.463704e-02	ci left: 1.999150e-01	ci right 2.090757e-01	k: 6134	n:30000
Cons ci ratio: 8.151533e-02	ci left: 6.864201e-02	ci right 7.450795e-02	k: 2146	n:30000
KS ci ratio: 1.584956e-02	ci left: 6.655833e-01	ci right 6.762503e-01	k: 20128	n:30000
P2RY2   30000 perm   6 sec   (5150 perm/sec)   p_kst 6.709333e-01   p_cons 7.153333e-02   p_joint 2.044667e-01

Outputting figure to mutsig2_images.part000000000125/P2RY2.3_1138_30000_0.67093_0.071533_0.20447.png
                gene_name: P2RY2
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.072 
      ci_cons_bounds_left: 0.069 
     ci_cons_bounds_right: 0.075 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 52 percent done.
P4HA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.943566e-02	ci left: 6.298992e-01	ci right 6.488195e-01	k: 6394	n:10000
KS ci ratio: 2.036945e-02	ci left: 7.792477e-01	ci right 7.953845e-01	k: 7874	n:10000
P4HA2   10000 perm   2 sec   (5811 perm/sec)   p_kst 7.874000e-01   p_cons 6.394000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000125/P4HA2.3_1728_10000_0.7874_0.6394_1.png
                gene_name: P4HA2
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 54 percent done.
P4HA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.154130e-02	ci left: 2.225711e-01	ci right 2.391859e-01	k: 2308	n:10000
Cons ci ratio: 1.460418e-01	ci left: 6.227288e-02	ci right 7.218104e-02	k: 671	n:10000
KS ci ratio: 4.059050e-02	ci left: 4.726625e-01	ci right 4.923477e-01	k: 4825	n:10000
P4HA3   10000 perm   2 sec   (5799 perm/sec)   p_kst 4.825000e-01   p_cons 6.710000e-02   p_joint 2.308000e-01

Joint ci ratio: 4.620989e-02	ci left: 2.584464e-01	ci right 2.707221e-01	k: 5291	n:20000
Cons ci ratio: 1.028597e-01	ci left: 6.420742e-02	ci right 7.121890e-02	k: 1353	n:20000
KS ci ratio: 2.872132e-02	ci left: 4.752529e-01	ci right 4.891523e-01	k: 9644	n:20000
P4HA3   20000 perm   4 sec   (5121 perm/sec)   p_kst 4.822000e-01   p_cons 6.765000e-02   p_joint 2.645500e-01

Joint ci ratio: 4.445040e-02	ci left: 2.012702e-01	ci right 2.104535e-01	k: 6175	n:30000
Cons ci ratio: 8.356670e-02	ci left: 6.547070e-02	ci right 7.121324e-02	k: 2049	n:30000
KS ci ratio: 2.370971e-02	ci left: 4.710673e-01	ci right 4.824038e-01	k: 14302	n:30000
P4HA3   30000 perm   6 sec   (4897 perm/sec)   p_kst 4.767333e-01   p_cons 6.830000e-02   p_joint 2.058333e-01

Outputting figure to mutsig2_images.part000000000125/P4HA3.3_1687_30000_0.47673_0.0683_0.20583.png
                gene_name: P4HA3
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.068 
      ci_cons_bounds_left: 0.065 
     ci_cons_bounds_right: 0.071 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 56 percent done.
PABPC1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.673202e-02	ci left: 5.225625e-01	ci right 5.422186e-01	k: 5324	n:10000
Cons ci ratio: 7.871795e-02	ci left: 1.908194e-01	ci right 2.065565e-01	k: 1986	n:10000
KS ci ratio: 2.455362e-02	ci left: 7.092699e-01	ci right 7.270028e-01	k: 7182	n:10000
PABPC1L   10000 perm   2 sec   (5795 perm/sec)   p_kst 7.182000e-01   p_cons 1.986000e-01   p_joint 5.324000e-01

Outputting figure to mutsig2_images.part000000000125/PABPC1L.3_1901_10000_0.7182_0.1986_0.5324.png
                gene_name: PABPC1L
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 58 percent done.
PACSIN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.019010e-01	ci left: 1.222933e-01	ci right 1.355237e-01	k: 1288	n:10000
Cons ci ratio: 2.669889e-01	ci left: 1.827990e-02	ci right 2.400381e-02	k: 210	n:10000
KS ci ratio: 7.747908e-02	ci left: 1.958434e-01	ci right 2.117295e-01	k: 2037	n:10000
PACSIN1   10000 perm   2 sec   (6274 perm/sec)   p_kst 2.037000e-01   p_cons 2.100000e-02   p_joint 1.288000e-01

Joint ci ratio: 1.125835e-01	ci left: 5.392380e-02	ci right 6.040569e-02	k: 1142	n:20000
Cons ci ratio: 2.038660e-01	ci left: 1.629772e-02	ci right 2.004424e-02	k: 362	n:20000
KS ci ratio: 5.376942e-02	ci left: 2.042736e-01	ci right 2.156109e-01	k: 4198	n:20000
PACSIN1   20000 perm   4 sec   (5529 perm/sec)   p_kst 2.099000e-01   p_cons 1.810000e-02   p_joint 5.710000e-02

Joint ci ratio: 8.664648e-02	ci left: 6.109278e-02	ci right 6.665872e-02	k: 1915	n:30000
Cons ci ratio: 1.668478e-01	ci left: 1.655765e-02	ci right 1.960336e-02	k: 541	n:30000
KS ci ratio: 4.390933e-02	ci left: 2.052703e-01	ci right 2.145193e-01	k: 6296	n:30000
PACSIN1   30000 perm   6 sec   (5229 perm/sec)   p_kst 2.098667e-01   p_cons 1.803333e-02   p_joint 6.383333e-02

Joint ci ratio: 9.592526e-02	ci left: 3.814944e-02	ci right 4.201769e-02	k: 1602	n:40000
Cons ci ratio: 1.438544e-01	ci left: 1.691258e-02	ci right 1.955802e-02	k: 728	n:40000
KS ci ratio: 3.845311e-02	ci left: 2.022442e-01	ci right 2.101985e-01	k: 8248	n:40000
PACSIN1   40000 perm   8 sec   (5046 perm/sec)   p_kst 2.062000e-01   p_cons 1.820000e-02   p_joint 4.005000e-02

Joint ci ratio: 9.061170e-02	ci left: 3.444280e-02	ci right 3.773135e-02	k: 1803	n:50000
Cons ci ratio: 1.279720e-01	ci left: 1.724004e-02	ci right 1.961634e-02	k: 920	n:50000
KS ci ratio: 3.463330e-02	ci left: 2.004155e-01	ci right 2.074989e-01	k: 10197	n:50000
PACSIN1   50000 perm   10 sec   (4895 perm/sec)   p_kst 2.039400e-01   p_cons 1.840000e-02   p_joint 3.606000e-02

Joint ci ratio: 9.351870e-02	ci left: 2.711794e-02	ci right 2.979460e-02	k: 1706	n:60000
Cons ci ratio: 1.159277e-01	ci left: 1.761489e-02	ci right 1.979868e-02	k: 1121	n:60000
KS ci ratio: 3.163297e-02	ci left: 2.005497e-01	ci right 2.070123e-01	k: 12226	n:60000
PACSIN1   60000 perm   13 sec   (4772 perm/sec)   p_kst 2.037667e-01   p_cons 1.868333e-02   p_joint 2.843333e-02

Joint ci ratio: 8.244398e-02	ci left: 2.999438e-02	ci right 3.258752e-02	k: 2189	n:70000
Cons ci ratio: 1.071200e-01	ci left: 1.776497e-02	ci right 1.978948e-02	k: 1313	n:70000
KS ci ratio: 2.919374e-02	ci left: 2.018156e-01	ci right 2.078089e-01	k: 14336	n:70000
PACSIN1   70000 perm   15 sec   (4657 perm/sec)   p_kst 2.048000e-01   p_cons 1.875714e-02   p_joint 3.127143e-02

Joint ci ratio: 7.239836e-02	ci left: 3.406872e-02	ci right 3.664012e-02	k: 2827	n:80000
Cons ci ratio: 1.002600e-01	ci left: 1.780911e-02	ci right 1.970101e-02	k: 1499	n:80000
KS ci ratio: 2.732623e-02	ci left: 2.017966e-01	ci right 2.073998e-01	k: 16367	n:80000
PACSIN1   80000 perm   18 sec   (4551 perm/sec)   p_kst 2.045875e-01   p_cons 1.873750e-02   p_joint 3.533750e-02

Joint ci ratio: 6.097924e-02	ci left: 4.255974e-02	ci right 4.524754e-02	k: 3950	n:90000
Cons ci ratio: 9.454036e-02	ci left: 1.785753e-02	ci right 1.964035e-02	k: 1686	n:90000
KS ci ratio: 2.572304e-02	ci left: 2.024660e-01	ci right 2.077530e-01	k: 18459	n:90000
PACSIN1   90000 perm   20 sec   (4459 perm/sec)   p_kst 2.051000e-01   p_cons 1.873333e-02   p_joint 4.388889e-02

Outputting figure to mutsig2_images.part000000000125/PACSIN1.3_1371_90000_0.2051_0.018733_0.043889.png
                gene_name: PACSIN1
               theta_stop: 0.095 
                    nperm: 90000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.019 
      ci_cons_bounds_left: 0.018 
     ci_cons_bounds_right: 0.020 
                  p_joint: 0.044 
     ci_joint_bounds_left: 0.043 
    ci_joint_bounds_right: 0.045 

Current progress: 60 percent done.
PAH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.425987e-02	ci left: 2.624051e-01	ci right 2.799284e-01	k: 2711	n:10000
Cons ci ratio: 1.381586e-01	ci left: 6.933115e-02	ci right 7.971834e-02	k: 744	n:10000
KS ci ratio: 6.775073e-02	ci left: 2.422288e-01	ci right 2.593166e-01	k: 2507	n:10000
PAH   10000 perm   2 sec   (6295 perm/sec)   p_kst 2.507000e-01   p_cons 7.440000e-02   p_joint 2.711000e-01

Joint ci ratio: 5.938241e-02	ci left: 1.735608e-01	ci right 1.842327e-01	k: 3577	n:20000
Cons ci ratio: 9.751825e-02	ci left: 7.109338e-02	ci right 7.843082e-02	k: 1494	n:20000
KS ci ratio: 4.836426e-02	ci left: 2.412335e-01	ci right 2.532401e-01	k: 4944	n:20000
PAH   20000 perm   4 sec   (5524 perm/sec)   p_kst 2.472000e-01   p_cons 7.470000e-02   p_joint 1.788500e-01

Outputting figure to mutsig2_images.part000000000125/PAH.3_1411_20000_0.2472_0.0747_0.17885.png
                gene_name: PAH
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.075 
      ci_cons_bounds_left: 0.071 
     ci_cons_bounds_right: 0.078 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 62 percent done.
PAM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.677188e-02	ci left: 6.726697e-01	ci right 6.910243e-01	k: 6819	n:10000
KS ci ratio: 2.402670e-02	ci left: 7.180521e-01	ci right 7.356156e-01	k: 7269	n:10000
PAM   10000 perm   2 sec   (5122 perm/sec)   p_kst 7.269000e-01   p_cons 6.819000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000125/PAM.3_3025_10000_0.7269_0.6819_1.png
                gene_name: PAM
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
PAPOLG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.877944e-02	ci left: 3.827127e-01	ci right 4.019500e-01	k: 3923	n:10000
Cons ci ratio: 6.223756e-03	ci left: 9.722779e-01	ci right 9.784409e-01	k: 9755	n:10000
KS ci ratio: 5.243755e-02	ci left: 3.489937e-01	ci right 3.678888e-01	k: 3584	n:10000
PAPOLG   10000 perm   2 sec   (5593 perm/sec)   p_kst 3.584000e-01   p_cons 9.755000e-01   p_joint 3.923000e-01

Outputting figure to mutsig2_images.part000000000125/PAPOLG.3_2299_10000_0.3584_0.9755_0.3923.png
                gene_name: PAPOLG
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 67 percent done.
P2RX7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.487530e-02	ci left: 7.039218e-01	ci right 7.217540e-01	k: 7129	n:10000
KS ci ratio: 2.341025e-02	ci left: 7.283538e-01	ci right 7.457079e-01	k: 7371	n:10000
P2RX7   10000 perm   2 sec   (6165 perm/sec)   p_kst 7.371000e-01   p_cons 7.129000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000125/P2RX7.2_1840_10000_0.7371_0.7129_1.png
                gene_name: P2RX7
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 69 percent done.
P2RY4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.099754e-02	ci left: 9.218292e-01	ci right 9.321204e-01	k: 9271	n:10000
Cons ci ratio: 1.056902e-02	ci left: 9.271989e-01	ci right 9.371476e-01	k: 9323	n:10000
KS ci ratio: 2.698187e-02	ci left: 6.692450e-01	ci right 6.876510e-01	k: 6785	n:10000
P2RY4   10000 perm   1 sec   (6716 perm/sec)   p_kst 6.785000e-01   p_cons 9.323000e-01   p_joint 9.271000e-01

Outputting figure to mutsig2_images.part000000000125/P2RY4.2_1102_10000_0.6785_0.9323_0.9271.png
                gene_name: P2RY4
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 71 percent done.
P2RY6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.937057e-01	ci left: 1.492852e-02	ci right 2.015795e-02	k: 174	n:10000
Cons ci ratio: 3.301551e-01	ci left: 1.160595e-02	ci right 1.628351e-02	k: 138	n:10000
KS ci ratio: 1.200103e-01	ci left: 9.058624e-02	ci right 1.022501e-01	k: 963	n:10000
P2RY6   10000 perm   2 sec   (6564 perm/sec)   p_kst 9.630000e-02   p_cons 1.380000e-02   p_joint 1.740000e-02

Joint ci ratio: 1.492271e-01	ci left: 3.085647e-02	ci right 3.588039e-02	k: 666	n:20000
Cons ci ratio: 2.458647e-01	ci left: 1.100641e-02	ci right 1.413769e-02	k: 250	n:20000
KS ci ratio: 8.402037e-02	ci left: 9.401126e-02	ci right 1.023060e-01	k: 1962	n:20000
P2RY6   20000 perm   3 sec   (5780 perm/sec)   p_kst 9.810000e-02   p_cons 1.250000e-02   p_joint 3.330000e-02

Joint ci ratio: 1.277417e-01	ci left: 2.848615e-02	ci right 3.240548e-02	k: 912	n:30000
Cons ci ratio: 2.039269e-01	ci left: 1.092521e-02	ci right 1.343725e-02	k: 364	n:30000
KS ci ratio: 6.893425e-02	ci left: 9.393599e-02	ci right 1.006756e-01	k: 2918	n:30000
P2RY6   30000 perm   5 sec   (5486 perm/sec)   p_kst 9.726667e-02   p_cons 1.213333e-02   p_joint 3.040000e-02

Joint ci ratio: 1.538273e-01	ci left: 1.474499e-02	ci right 1.722599e-02	k: 638	n:40000
Cons ci ratio: 1.770984e-01	ci left: 1.102769e-02	ci right 1.319401e-02	k: 483	n:40000
KS ci ratio: 5.980972e-02	ci left: 9.406717e-02	ci right 9.989149e-02	k: 3878	n:40000
P2RY6   40000 perm   8 sec   (5304 perm/sec)   p_kst 9.695000e-02   p_cons 1.207500e-02   p_joint 1.595000e-02

Joint ci ratio: 1.272699e-01	ci left: 1.743376e-02	ci right 1.982259e-02	k: 930	n:50000
Cons ci ratio: 1.605650e-01	ci left: 1.083350e-02	ci right 1.274381e-02	k: 588	n:50000
KS ci ratio: 5.365961e-02	ci left: 9.384628e-02	ci right 9.904068e-02	k: 4821	n:50000
P2RY6   50000 perm   10 sec   (5127 perm/sec)   p_kst 9.642000e-02   p_cons 1.176000e-02   p_joint 1.860000e-02

Joint ci ratio: 1.168329e-01	ci left: 1.733966e-02	ci right 1.950728e-02	k: 1104	n:60000
Cons ci ratio: 1.470816e-01	ci left: 1.083887e-02	ci right 1.257551e-02	k: 701	n:60000
KS ci ratio: 4.911788e-02	ci left: 9.360462e-02	ci right 9.833454e-02	k: 5757	n:60000
P2RY6   60000 perm   12 sec   (4991 perm/sec)   p_kst 9.595000e-02   p_cons 1.168333e-02   p_joint 1.840000e-02

Joint ci ratio: 9.431053e-02	ci left: 2.294862e-02	ci right 2.523392e-02	k: 1685	n:70000
Cons ci ratio: 1.361713e-01	ci left: 1.090275e-02	ci right 1.250954e-02	k: 818	n:70000
KS ci ratio: 4.548810e-02	ci left: 9.372833e-02	ci right 9.810523e-02	k: 6713	n:70000
P2RY6   70000 perm   14 sec   (4875 perm/sec)   p_kst 9.590000e-02   p_cons 1.168571e-02   p_joint 2.407143e-02

Joint ci ratio: 7.539301e-02	ci left: 3.145376e-02	ci right 3.393028e-02	k: 2614	n:80000
Cons ci ratio: 1.284925e-01	ci left: 1.076058e-02	ci right 1.225016e-02	k: 919	n:80000
KS ci ratio: 4.234346e-02	ci left: 9.470991e-02	ci right 9.881938e-02	k: 7740	n:80000
P2RY6   80000 perm   17 sec   (4752 perm/sec)   p_kst 9.675000e-02   p_cons 1.148750e-02   p_joint 3.267500e-02

Joint ci ratio: 6.341895e-02	ci left: 3.942928e-02	ci right 4.202265e-02	k: 3664	n:90000
Cons ci ratio: 1.212032e-01	ci left: 1.079210e-02	ci right 1.219521e-02	k: 1033	n:90000
KS ci ratio: 4.002782e-02	ci left: 9.436915e-02	ci right 9.823469e-02	k: 8666	n:90000
P2RY6   90000 perm   19 sec   (4644 perm/sec)   p_kst 9.628889e-02   p_cons 1.147778e-02   p_joint 4.071111e-02

Joint ci ratio: 9.250602e-02	ci left: 1.682335e-02	ci right 1.846480e-02	k: 1763	n:100000
Cons ci ratio: 1.149779e-01	ci left: 1.082894e-02	ci right 1.215962e-02	k: 1148	n:100000
KS ci ratio: 3.799557e-02	ci left: 9.436925e-02	ci right 9.803421e-02	k: 9619	n:100000
P2RY6   100000 perm   22 sec   (4542 perm/sec)   p_kst 9.619000e-02   p_cons 1.148000e-02   p_joint 1.763000e-02

Joint ci ratio: 1.031681e-01	ci left: 1.228577e-02	ci right 1.363100e-02	k: 1424	n:110000
Cons ci ratio: 1.089706e-01	ci left: 1.099328e-02	ci right 1.226903e-02	k: 1278	n:110000
KS ci ratio: 3.621033e-02	ci left: 9.453574e-02	ci right 9.803103e-02	k: 10590	n:110000
P2RY6   110000 perm   25 sec   (4451 perm/sec)   p_kst 9.627273e-02   p_cons 1.161818e-02   p_joint 1.294545e-02

Joint ci ratio: 1.163744e-01	ci left: 8.821277e-03	ci right 9.919297e-03	k: 1123	n:120000
Cons ci ratio: 1.049909e-01	ci left: 1.088006e-02	ci right 1.209372e-02	k: 1377	n:120000
KS ci ratio: 3.463696e-02	ci left: 9.476880e-02	ci right 9.811740e-02	k: 11572	n:120000
P2RY6   120000 perm   28 sec   (4356 perm/sec)   p_kst 9.643333e-02   p_cons 1.147500e-02   p_joint 9.358333e-03

Joint ci ratio: 1.117935e-01	ci left: 8.845170e-03	ci right 9.899966e-03	k: 1217	n:130000
Cons ci ratio: 1.008663e-01	ci left: 1.090499e-02	ci right 1.207080e-02	k: 1492	n:130000
KS ci ratio: 3.328020e-02	ci left: 9.482371e-02	ci right 9.804047e-02	k: 12535	n:130000
P2RY6   130000 perm   30 sec   (4277 perm/sec)   p_kst 9.642308e-02   p_cons 1.147692e-02   p_joint 9.361538e-03

Joint ci ratio: 1.072612e-01	ci left: 8.942854e-03	ci right 9.963333e-03	k: 1322	n:140000
Cons ci ratio: 9.746887e-02	ci left: 1.086441e-02	ci right 1.198453e-02	k: 1598	n:140000
KS ci ratio: 3.210556e-02	ci left: 9.468860e-02	ci right 9.778529e-02	k: 13472	n:140000
P2RY6   140000 perm   33 sec   (4198 perm/sec)   p_kst 9.622857e-02   p_cons 1.141429e-02   p_joint 9.442857e-03

Joint ci ratio: 8.632658e-02	ci left: 1.297427e-02	ci right 1.415131e-02	k: 2033	n:150000
Cons ci ratio: 9.442108e-02	ci left: 1.082331e-02	ci right 1.190237e-02	k: 1703	n:150000
KS ci ratio: 3.103043e-02	ci left: 9.466594e-02	ci right 9.765636e-02	k: 14423	n:150000
P2RY6   150000 perm   37 sec   (4102 perm/sec)   p_kst 9.615333e-02   p_cons 1.135333e-02   p_joint 1.355333e-02

Outputting figure to mutsig2_images.part000000000125/P2RY6.2_991_150000_0.096153_0.011353_0.013553.png
                gene_name: P2RY6
               theta_stop: 0.094 
                    nperm: 150000 
                     p_ks: 0.096 
        ci_ks_bounds_left: 0.095 
       ci_ks_bounds_right: 0.098 
                   p_cons: 0.011 
      ci_cons_bounds_left: 0.011 
     ci_cons_bounds_right: 0.012 
                  p_joint: 0.014 
     ci_joint_bounds_left: 0.013 
    ci_joint_bounds_right: 0.014 

Current progress: 73 percent done.
P2RY8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.320499e-02	ci left: 7.317890e-01	ci right 7.490707e-01	k: 7405	n:10000
Cons ci ratio: 4.090057e-02	ci left: 4.688665e-01	ci right 4.885459e-01	k: 4787	n:10000
KS ci ratio: 6.948898e-02	ci left: 2.329402e-01	ci right 2.498108e-01	k: 2413	n:10000
P2RY8   10000 perm   1 sec   (6983 perm/sec)   p_kst 2.413000e-01   p_cons 4.787000e-01   p_joint 7.405000e-01

Outputting figure to mutsig2_images.part000000000125/P2RY8.2_1084_10000_0.2413_0.4787_0.7405.png
                gene_name: P2RY8
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 75 percent done.
P4HA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.012743e-02	ci left: 9.325769e-01	ci right 9.421664e-01	k: 9375	n:10000
Cons ci ratio: 4.454932e-02	ci left: 4.265498e-01	ci right 4.460873e-01	k: 4363	n:10000
KS ci ratio: 1.740814e-02	ci left: 8.278829e-01	ci right 8.425213e-01	k: 8353	n:10000
P4HA1   10000 perm   2 sec   (6195 perm/sec)   p_kst 8.353000e-01   p_cons 4.363000e-01   p_joint 9.375000e-01

Outputting figure to mutsig2_images.part000000000125/P4HA1.2_1736_10000_0.8353_0.4363_0.9375.png
                gene_name: P4HA1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 77 percent done.
PAAF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.041202e-02	ci left: 7.785383e-01	ci right 7.946944e-01	k: 7867	n:10000
Cons ci ratio: 2.126095e-02	ci left: 7.643573e-01	ci right 7.808836e-01	k: 7727	n:10000
KS ci ratio: 2.481456e-02	ci left: 7.049308e-01	ci right 7.227445e-01	k: 7139	n:10000
PAAF1   10000 perm   1 sec   (6886 perm/sec)   p_kst 7.139000e-01   p_cons 7.727000e-01   p_joint 7.867000e-01

Outputting figure to mutsig2_images.part000000000125/PAAF1.2_1227_10000_0.7139_0.7727_0.7867.png
                gene_name: PAAF1
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.79 

Current progress: 79 percent done.
PABPC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.355961e-02	ci left: 5.672458e-01	ci right 5.867093e-01	k: 5770	n:10000
Cons ci ratio: 3.089463e-02	ci left: 6.071884e-01	ci right 6.263435e-01	k: 6168	n:10000
KS ci ratio: 4.714180e-02	ci left: 3.990427e-01	ci right 4.184105e-01	k: 4087	n:10000
PABPC4   10000 perm   2 sec   (5898 perm/sec)   p_kst 4.087000e-01   p_cons 6.168000e-01   p_joint 5.770000e-01

Outputting figure to mutsig2_images.part000000000125/PABPC4.2_2043_10000_0.4087_0.6168_0.577.png
                gene_name: PABPC4
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 81 percent done.
PACRG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.130871e+00	ci left: 5.492399e-04	ci right 1.967349e-03	k: 11	n:10000
Cons ci ratio: 5.146020e-02	ci left: 3.576425e-01	ci right 3.766349e-01	k: 3671	n:10000
KS ci ratio: 1.385306e+00	ci left: 2.814811e-04	ci right 1.441732e-03	k: 7	n:10000
PACRG   10000 perm   2 sec   (6665 perm/sec)   p_kst 7.000000e-04   p_cons 3.671000e-01   p_joint 1.100000e-03

Joint ci ratio: 5.651098e-01	ci left: 1.727187e-03	ci right 3.123791e-03	k: 47	n:20000
Cons ci ratio: 3.636423e-02	ci left: 3.607631e-01	ci right 3.741755e-01	k: 7349	n:20000
KS ci ratio: 8.988600e-01	ci left: 5.334815e-04	ci right 1.422016e-03	k: 18	n:20000
PACRG   20000 perm   3 sec   (5800 perm/sec)   p_kst 9.000000e-04   p_cons 3.674500e-01   p_joint 2.350000e-03

Joint ci ratio: 6.354945e-01	ci left: 8.685245e-04	ci right 1.699591e-03	k: 37	n:30000
Cons ci ratio: 2.998294e-02	ci left: 3.574890e-01	ci right 3.684042e-01	k: 10888	n:30000
KS ci ratio: 7.998332e-01	ci left: 4.860610e-04	ci right 1.150156e-03	k: 23	n:30000
PACRG   30000 perm   5 sec   (5507 perm/sec)   p_kst 7.666667e-04   p_cons 3.629333e-01   p_joint 1.233333e-03

Joint ci ratio: 5.485529e-01	ci left: 9.279120e-04	ci right 1.647641e-03	k: 50	n:40000
Cons ci ratio: 2.604852e-02	ci left: 3.567646e-01	ci right 3.662055e-01	k: 14459	n:40000
KS ci ratio: 6.719803e-01	ci left: 5.679580e-04	ci right 1.158413e-03	k: 33	n:40000
PACRG   40000 perm   8 sec   (5295 perm/sec)   p_kst 8.250000e-04   p_cons 3.614750e-01   p_joint 1.250000e-03

Joint ci ratio: 4.750417e-01	ci left: 1.038628e-03	ci right 1.701445e-03	k: 67	n:50000
Cons ci ratio: 2.326422e-02	ci left: 3.579453e-01	ci right 3.663907e-01	k: 18108	n:50000
KS ci ratio: 5.975313e-01	ci left: 6.054631e-04	ci right 1.135268e-03	k: 42	n:50000
PACRG   50000 perm   10 sec   (5141 perm/sec)   p_kst 8.400000e-04   p_cons 3.621600e-01   p_joint 1.340000e-03

Joint ci ratio: 3.684121e-01	ci left: 1.537248e-03	ci right 2.245659e-03	k: 112	n:60000
Cons ci ratio: 2.122023e-02	ci left: 3.586851e-01	ci right 3.663948e-01	k: 21752	n:60000
KS ci ratio: 5.433661e-01	ci left: 6.329443e-04	ci right 1.117443e-03	k: 51	n:60000
PACRG   60000 perm   12 sec   (5016 perm/sec)   p_kst 8.500000e-04   p_cons 3.625333e-01   p_joint 1.866667e-03

Joint ci ratio: 3.434849e-01	ci left: 1.538806e-03	ci right 2.189314e-03	k: 129	n:70000
Cons ci ratio: 1.967985e-02	ci left: 3.581819e-01	ci right 3.653152e-01	k: 25322	n:70000
KS ci ratio: 4.936478e-01	ci left: 6.791374e-04	ci right 1.135304e-03	k: 62	n:70000
PACRG   70000 perm   14 sec   (4891 perm/sec)   p_kst 8.857143e-04   p_cons 3.617429e-01   p_joint 1.842857e-03

Joint ci ratio: 3.197645e-01	ci left: 1.575671e-03	ci right 2.186361e-03	k: 149	n:80000
Cons ci ratio: 1.841159e-02	ci left: 3.583443e-01	ci right 3.650158e-01	k: 28934	n:80000
KS ci ratio: 4.524276e-01	ci left: 7.263916e-04	ci right 1.161116e-03	k: 74	n:80000
PACRG   80000 perm   17 sec   (4773 perm/sec)   p_kst 9.250000e-04   p_cons 3.616750e-01   p_joint 1.862500e-03

Joint ci ratio: 2.782741e-01	ci left: 1.894154e-03	ci right 2.516406e-03	k: 197	n:90000
Cons ci ratio: 1.735397e-02	ci left: 3.586596e-01	ci right 3.649493e-01	k: 32562	n:90000
KS ci ratio: 4.275051e-01	ci left: 7.346097e-04	ci right 1.143107e-03	k: 83	n:90000
PACRG   90000 perm   19 sec   (4666 perm/sec)   p_kst 9.222222e-04   p_cons 3.618000e-01   p_joint 2.188889e-03

Joint ci ratio: 2.856251e-01	ci left: 1.611773e-03	ci right 2.157768e-03	k: 187	n:100000
Cons ci ratio: 1.648130e-02	ci left: 3.583217e-01	ci right 3.642863e-01	k: 36130	n:100000
KS ci ratio: 4.062940e-01	ci left: 7.417123e-04	ci right 1.128181e-03	k: 92	n:100000
PACRG   100000 perm   22 sec   (4568 perm/sec)   p_kst 9.200000e-04   p_cons 3.613000e-01   p_joint 1.870000e-03

Joint ci ratio: 2.715448e-01	ci left: 1.634375e-03	ci right 2.156085e-03	k: 207	n:110000
Cons ci ratio: 1.570969e-02	ci left: 3.585965e-01	ci right 3.642836e-01	k: 39758	n:110000
KS ci ratio: 3.898737e-01	ci left: 7.397320e-04	ci right 1.105589e-03	k: 100	n:110000
PACRG   110000 perm   25 sec   (4474 perm/sec)   p_kst 9.090909e-04   p_cons 3.614364e-01   p_joint 1.881818e-03

Joint ci ratio: 2.622575e-01	ci left: 1.614813e-03	ci right 2.109758e-03	k: 222	n:120000
Cons ci ratio: 1.503503e-02	ci left: 3.588974e-01	ci right 3.643426e-01	k: 43394	n:120000
KS ci ratio: 3.805743e-01	ci left: 7.157174e-04	ci right 1.059143e-03	k: 105	n:120000
PACRG   120000 perm   27 sec   (4391 perm/sec)   p_kst 8.750000e-04   p_cons 3.616167e-01   p_joint 1.850000e-03

Joint ci ratio: 2.528003e-01	ci left: 1.612927e-03	ci right 2.086659e-03	k: 239	n:130000
Cons ci ratio: 1.445488e-02	ci left: 3.586956e-01	ci right 3.639259e-01	k: 46970	n:130000
KS ci ratio: 3.753090e-01	ci left: 6.815444e-04	ci right 1.002934e-03	k: 108	n:130000
PACRG   130000 perm   30 sec   (4311 perm/sec)   p_kst 8.307692e-04   p_cons 3.613077e-01   p_joint 1.838462e-03

Joint ci ratio: 2.414895e-01	ci left: 1.651838e-03	ci right 2.112042e-03	k: 262	n:140000
Cons ci ratio: 1.393644e-02	ci left: 3.585476e-01	ci right 3.635867e-01	k: 50549	n:140000
KS ci ratio: 3.504576e-01	ci left: 7.367436e-04	ci right 1.055941e-03	k: 124	n:140000
PACRG   140000 perm   33 sec   (4236 perm/sec)   p_kst 8.857143e-04   p_cons 3.610643e-01   p_joint 1.871429e-03

Joint ci ratio: 2.462395e-01	ci left: 1.479105e-03	ci right 1.900532e-03	k: 252	n:150000
Cons ci ratio: 1.347882e-02	ci left: 3.581228e-01	ci right 3.629892e-01	k: 54083	n:150000
KS ci ratio: 3.410409e-01	ci left: 7.302420e-04	ci right 1.036249e-03	k: 131	n:150000
PACRG   150000 perm   36 sec   (4156 perm/sec)   p_kst 8.733333e-04   p_cons 3.605533e-01   p_joint 1.680000e-03

Joint ci ratio: 2.392507e-01	ci left: 1.474709e-03	ci right 1.881190e-03	k: 267	n:160000
Cons ci ratio: 1.304861e-02	ci left: 3.582778e-01	ci right 3.629897e-01	k: 57701	n:160000
KS ci ratio: 3.265186e-01	ci left: 7.533210e-04	ci right 1.052741e-03	k: 143	n:160000
PACRG   160000 perm   39 sec   (4083 perm/sec)   p_kst 8.937500e-04   p_cons 3.606313e-01   p_joint 1.668750e-03

Joint ci ratio: 2.315987e-01	ci left: 1.487602e-03	ci right 1.882645e-03	k: 285	n:170000
Cons ci ratio: 1.264907e-02	ci left: 3.587105e-01	ci right 3.632825e-01	k: 61369	n:170000
KS ci ratio: 3.188624e-01	ci left: 7.468494e-04	ci right 1.035316e-03	k: 150	n:170000
PACRG   170000 perm   42 sec   (4013 perm/sec)   p_kst 8.823529e-04   p_cons 3.609941e-01   p_joint 1.676471e-03

Joint ci ratio: 2.257554e-01	ci left: 1.483517e-03	ci right 1.866153e-03	k: 300	n:180000
Cons ci ratio: 1.228292e-02	ci left: 3.591413e-01	ci right 3.635854e-01	k: 65045	n:180000
KS ci ratio: 3.117207e-01	ci left: 7.411696e-04	ci right 1.019755e-03	k: 157	n:180000
PACRG   180000 perm   46 sec   (3949 perm/sec)   p_kst 8.722222e-04   p_cons 3.613611e-01   p_joint 1.666667e-03

Joint ci ratio: 2.182673e-01	ci left: 1.509821e-03	ci right 1.884593e-03	k: 321	n:190000
Cons ci ratio: 1.194792e-02	ci left: 3.594864e-01	ci right 3.638125e-01	k: 68713	n:190000
KS ci ratio: 3.032046e-01	ci left: 7.458757e-04	ci right 1.017094e-03	k: 166	n:190000
PACRG   190000 perm   49 sec   (3886 perm/sec)   p_kst 8.736842e-04   p_cons 3.616474e-01   p_joint 1.689474e-03

Joint ci ratio: 2.152838e-01	ci left: 1.476884e-03	ci right 1.837807e-03	k: 330	n:200000
Cons ci ratio: 1.163663e-02	ci left: 3.598883e-01	ci right 3.641057e-01	k: 72399	n:200000
KS ci ratio: 2.945141e-01	ci left: 7.548346e-04	ci right 1.019976e-03	k: 176	n:200000
PACRG   200000 perm   52 sec   (3822 perm/sec)   p_kst 8.800000e-04   p_cons 3.619950e-01   p_joint 1.650000e-03

Joint ci ratio: 2.114867e-01	ci left: 1.460644e-03	ci right 1.810486e-03	k: 342	n:210000
Cons ci ratio: 1.135958e-02	ci left: 3.598014e-01	ci right 3.639167e-01	k: 75990	n:210000
KS ci ratio: 2.920536e-01	ci left: 7.321236e-04	ci right 9.867415e-04	k: 179	n:210000
PACRG   210000 perm   56 sec   (3762 perm/sec)   p_kst 8.523810e-04   p_cons 3.618571e-01   p_joint 1.628571e-03

Joint ci ratio: 2.078836e-01	ci left: 1.445931e-03	ci right 1.785599e-03	k: 354	n:220000
Cons ci ratio: 1.110197e-02	ci left: 3.597008e-01	ci right 3.637210e-01	k: 79576	n:220000
KS ci ratio: 2.827775e-01	ci left: 7.494609e-04	ci right 1.000354e-03	k: 191	n:220000
PACRG   220000 perm   59 sec   (3701 perm/sec)   p_kst 8.681818e-04   p_cons 3.617091e-01   p_joint 1.609091e-03

Joint ci ratio: 2.025331e-01	ci left: 1.461430e-03	ci right 1.794810e-03	k: 373	n:230000
Cons ci ratio: 1.084458e-02	ci left: 3.603135e-01	ci right 3.642465e-01	k: 83324	n:230000
KS ci ratio: 2.736620e-01	ci left: 7.694564e-04	ci right 1.017313e-03	k: 204	n:230000
PACRG   230000 perm   63 sec   (3643 perm/sec)   p_kst 8.869565e-04   p_cons 3.622783e-01   p_joint 1.621739e-03

Joint ci ratio: 1.873478e-01	ci left: 1.650259e-03	ci right 1.995284e-03	k: 436	n:240000
Cons ci ratio: 1.061355e-02	ci left: 3.604723e-01	ci right 3.643227e-01	k: 86975	n:240000
KS ci ratio: 2.703868e-01	ci left: 7.568076e-04	ci right 9.971767e-04	k: 209	n:240000
PACRG   240000 perm   67 sec   (3584 perm/sec)   p_kst 8.708333e-04   p_cons 3.623958e-01   p_joint 1.816667e-03

Joint ci ratio: 1.850362e-01	ci left: 1.626196e-03	ci right 1.961524e-03	k: 447	n:250000
Cons ci ratio: 1.040019e-02	ci left: 3.604634e-01	ci right 3.642358e-01	k: 90587	n:250000
KS ci ratio: 2.678504e-01	ci left: 7.414550e-04	ci right 9.743679e-04	k: 213	n:250000
PACRG   250000 perm   71 sec   (3531 perm/sec)   p_kst 8.520000e-04   p_cons 3.623480e-01   p_joint 1.788000e-03

Joint ci ratio: 1.820152e-01	ci left: 1.618691e-03	ci right 1.946421e-03	k: 462	n:260000
Cons ci ratio: 1.019963e-02	ci left: 3.604367e-01	ci right 3.641356e-01	k: 94194	n:260000
KS ci ratio: 2.618027e-01	ci left: 7.488464e-04	ci right 9.779005e-04	k: 223	n:260000
PACRG   260000 perm   75 sec   (3479 perm/sec)   p_kst 8.576923e-04   p_cons 3.622846e-01   p_joint 1.776923e-03

Joint ci ratio: 1.789501e-01	ci left: 1.615322e-03	ci right 1.936265e-03	k: 478	n:270000
Cons ci ratio: 1.001538e-02	ci left: 3.601758e-01	ci right 3.638049e-01	k: 97737	n:270000
KS ci ratio: 2.572495e-01	ci left: 7.488137e-04	ci right 9.732348e-04	k: 231	n:270000
PACRG   270000 perm   79 sec   (3425 perm/sec)   p_kst 8.555556e-04   p_cons 3.619889e-01   p_joint 1.770370e-03

Joint ci ratio: 1.760348e-01	ci left: 1.612235e-03	ci right 1.926792e-03	k: 494	n:280000
Cons ci ratio: 9.841138e-03	ci left: 3.599163e-01	ci right 3.634794e-01	k: 101275	n:280000
KS ci ratio: 2.513585e-01	ci left: 7.588531e-04	ci right 9.802598e-04	k: 242	n:280000
PACRG   280000 perm   83 sec   (3376 perm/sec)   p_kst 8.642857e-04   p_cons 3.616964e-01   p_joint 1.764286e-03

Joint ci ratio: 1.730879e-01	ci left: 1.612701e-03	ci right 1.921531e-03	k: 511	n:290000
Cons ci ratio: 9.673297e-03	ci left: 3.597890e-01	ci right 3.632896e-01	k: 104846	n:290000
KS ci ratio: 2.478153e-01	ci left: 7.553138e-04	ci right 9.721026e-04	k: 249	n:290000
PACRG   290000 perm   87 sec   (3330 perm/sec)   p_kst 8.586207e-04   p_cons 3.615379e-01   p_joint 1.762069e-03

Joint ci ratio: 1.712599e-01	ci left: 1.594029e-03	ci right 1.895727e-03	k: 522	n:300000
Cons ci ratio: 9.514584e-03	ci left: 3.596307e-01	ci right 3.630720e-01	k: 108405	n:300000
KS ci ratio: 2.434714e-01	ci left: 7.582903e-04	ci right 9.715419e-04	k: 258	n:300000
PACRG   300000 perm   91 sec   (3282 perm/sec)   p_kst 8.600000e-04   p_cons 3.613500e-01   p_joint 1.740000e-03

Joint ci ratio: 1.674589e-01	ci left: 1.616749e-03	ci right 1.915270e-03	k: 546	n:310000
Cons ci ratio: 9.359769e-03	ci left: 3.596634e-01	ci right 3.630488e-01	k: 112020	n:310000
KS ci ratio: 2.380186e-01	ci left: 7.702049e-04	ci right 9.812412e-04	k: 270	n:310000
PACRG   310000 perm   96 sec   (3237 perm/sec)   p_kst 8.709677e-04   p_cons 3.613548e-01   p_joint 1.761290e-03

Joint ci ratio: 1.658018e-01	ci left: 1.599165e-03	ci right 1.891226e-03	k: 557	n:320000
Cons ci ratio: 9.218015e-03	ci left: 3.594074e-01	ci right 3.627389e-01	k: 115543	n:320000
KS ci ratio: 2.358541e-01	ci left: 7.608330e-04	ci right 9.671289e-04	k: 275	n:320000
PACRG   320000 perm   100 sec   (3193 perm/sec)   p_kst 8.593750e-04   p_cons 3.610719e-01   p_joint 1.740625e-03

Joint ci ratio: 1.626258e-01	ci left: 1.614634e-03	ci right 1.903319e-03	k: 579	n:330000
Cons ci ratio: 9.077318e-03	ci left: 3.594307e-01	ci right 3.627112e-01	k: 119153	n:330000
KS ci ratio: 2.308870e-01	ci left: 7.720158e-04	ci right 9.763070e-04	k: 287	n:330000
PACRG   330000 perm   105 sec   (3148 perm/sec)   p_kst 8.696970e-04   p_cons 3.610697e-01   p_joint 1.754545e-03

Joint ci ratio: 1.605634e-01	ci left: 1.609478e-03	ci right 1.893240e-03	k: 594	n:340000
Cons ci ratio: 8.942360e-03	ci left: 3.594793e-01	ci right 3.627113e-01	k: 122772	n:340000
KS ci ratio: 2.285198e-01	ci left: 7.659408e-04	ci right 9.662532e-04	k: 293	n:340000
PACRG   340000 perm   109 sec   (3105 perm/sec)   p_kst 8.617647e-04   p_cons 3.610941e-01   p_joint 1.747059e-03

Joint ci ratio: 1.580593e-01	ci left: 1.615615e-03	ci right 1.895595e-03	k: 613	n:350000
Cons ci ratio: 8.808830e-03	ci left: 3.597568e-01	ci right 3.629427e-01	k: 126472	n:350000
KS ci ratio: 2.243604e-01	ci left: 7.737032e-04	ci right 9.718537e-04	k: 304	n:350000
PACRG   350000 perm   114 sec   (3064 perm/sec)   p_kst 8.685714e-04   p_cons 3.613486e-01   p_joint 1.751429e-03

Joint ci ratio: 1.562883e-01	ci left: 1.608095e-03	ci right 1.883357e-03	k: 627	n:360000
Cons ci ratio: 8.682044e-03	ci left: 3.599692e-01	ci right 3.631108e-01	k: 130154	n:360000
KS ci ratio: 2.221865e-01	ci left: 7.679457e-04	ci right 9.624554e-04	k: 310	n:360000
PACRG   360000 perm   119 sec   (3023 perm/sec)   p_kst 8.611111e-04   p_cons 3.615389e-01   p_joint 1.741667e-03

Joint ci ratio: 1.533835e-01	ci left: 1.626986e-03	ci right 1.899830e-03	k: 651	n:370000
Cons ci ratio: 8.562583e-03	ci left: 3.600624e-01	ci right 3.631614e-01	k: 133796	n:370000
KS ci ratio: 2.176821e-01	ci left: 7.803909e-04	ci right 9.735098e-04	k: 323	n:370000
PACRG   370000 perm   124 sec   (2982 perm/sec)   p_kst 8.729730e-04   p_cons 3.616108e-01   p_joint 1.759459e-03

Joint ci ratio: 1.517635e-01	ci left: 1.619606e-03	ci right 1.888083e-03	k: 665	n:380000
Cons ci ratio: 8.451774e-03	ci left: 3.599407e-01	ci right 3.629983e-01	k: 137358	n:380000
KS ci ratio: 2.150437e-01	ci left: 7.797661e-04	ci right 9.700829e-04	k: 331	n:380000
PACRG   380000 perm   129 sec   (2944 perm/sec)   p_kst 8.710526e-04   p_cons 3.614684e-01   p_joint 1.750000e-03

Joint ci ratio: 1.495344e-01	ci left: 1.627427e-03	ci right 1.892884e-03	k: 685	n:390000
Cons ci ratio: 8.344694e-03	ci left: 3.598510e-01	ci right 3.628690e-01	k: 140930	n:390000
KS ci ratio: 2.115667e-01	ci left: 7.864709e-04	ci right 9.749181e-04	k: 342	n:390000
PACRG   390000 perm   134 sec   (2910 perm/sec)   p_kst 8.769231e-04   p_cons 3.613590e-01   p_joint 1.756410e-03

Joint ci ratio: 1.475054e-01	ci left: 1.632477e-03	ci right 1.894825e-03	k: 704	n:400000
Cons ci ratio: 8.239083e-03	ci left: 3.599060e-01	ci right 3.628860e-01	k: 144558	n:400000
KS ci ratio: 2.094409e-01	ci left: 7.833865e-04	ci right 9.689666e-04	k: 349	n:400000
PACRG   400000 perm   139 sec   (2875 perm/sec)   p_kst 8.725000e-04   p_cons 3.613950e-01   p_joint 1.760000e-03

Joint ci ratio: 1.462668e-01	ci left: 1.620852e-03	ci right 1.878954e-03	k: 716	n:410000
Cons ci ratio: 8.139705e-03	ci left: 3.598269e-01	ci right 3.627702e-01	k: 148132	n:410000
KS ci ratio: 2.067988e-01	ci left: 7.850868e-04	ci right 9.684268e-04	k: 358	n:410000
PACRG   410000 perm   144 sec   (2841 perm/sec)   p_kst 8.731707e-04   p_cons 3.612976e-01   p_joint 1.746341e-03

Joint ci ratio: 1.440724e-01	ci left: 1.632740e-03	ci right 1.888498e-03	k: 738	n:420000
Cons ci ratio: 8.038695e-03	ci left: 3.600468e-01	ci right 3.629551e-01	k: 151830	n:420000
KS ci ratio: 2.042543e-01	ci left: 7.867201e-04	ci right 9.678988e-04	k: 367	n:420000
PACRG   420000 perm   150 sec   (2809 perm/sec)   p_kst 8.738095e-04   p_cons 3.615000e-01   p_joint 1.757143e-03

Joint ci ratio: 1.426326e-01	ci left: 1.628401e-03	ci right 1.880714e-03	k: 753	n:430000
Cons ci ratio: 7.943432e-03	ci left: 3.601358e-01	ci right 3.630102e-01	k: 155476	n:430000
KS ci ratio: 2.026100e-01	ci left: 7.816668e-04	ci right 9.600531e-04	k: 373	n:430000
PACRG   430000 perm   155 sec   (2777 perm/sec)   p_kst 8.674419e-04   p_cons 3.615721e-01   p_joint 1.751163e-03

Joint ci ratio: 1.408685e-01	ci left: 1.633043e-03	ci right 1.882683e-03	k: 772	n:440000
Cons ci ratio: 7.854841e-03	ci left: 3.600234e-01	ci right 3.628647e-01	k: 159035	n:440000
KS ci ratio: 1.996940e-01	ci left: 7.876428e-04	ci right 9.644909e-04	k: 384	n:440000
PACRG   440000 perm   160 sec   (2744 perm/sec)   p_kst 8.727273e-04   p_cons 3.614432e-01   p_joint 1.754545e-03

Joint ci ratio: 1.394331e-01	ci left: 1.631061e-03	ci right 1.877647e-03	k: 788	n:450000
Cons ci ratio: 7.766830e-03	ci left: 3.600539e-01	ci right 3.628634e-01	k: 162656	n:450000
KS ci ratio: 1.976513e-01	ci left: 7.870330e-04	ci right 9.617188e-04	k: 392	n:450000
PACRG   450000 perm   166 sec   (2712 perm/sec)   p_kst 8.711111e-04   p_cons 3.614578e-01   p_joint 1.751111e-03

Joint ci ratio: 1.374434e-01	ci left: 1.643873e-03	ci right 1.888558e-03	k: 811	n:460000
Cons ci ratio: 7.679326e-03	ci left: 3.602265e-01	ci right 3.630056e-01	k: 166343	n:460000
KS ci ratio: 1.951833e-01	ci left: 7.905938e-04	ci right 9.636185e-04	k: 402	n:460000
PACRG   460000 perm   172 sec   (2680 perm/sec)   p_kst 8.739130e-04   p_cons 3.616152e-01   p_joint 1.763043e-03

Joint ci ratio: 1.361916e-01	ci left: 1.639719e-03	ci right 1.881383e-03	k: 826	n:470000
Cons ci ratio: 7.594537e-03	ci left: 3.604026e-01	ci right 3.631523e-01	k: 170035	n:470000
KS ci ratio: 1.932746e-01	ci left: 7.899662e-04	ci right 9.609640e-04	k: 410	n:470000
PACRG   470000 perm   177 sec   (2648 perm/sec)   p_kst 8.723404e-04   p_cons 3.617766e-01   p_joint 1.757447e-03

Joint ci ratio: 1.349734e-01	ci left: 1.635748e-03	ci right 1.874497e-03	k: 841	n:480000
Cons ci ratio: 7.516157e-03	ci left: 3.603467e-01	ci right 3.630674e-01	k: 173619	n:480000
KS ci ratio: 1.918796e-01	ci left: 7.854058e-04	ci right 9.540461e-04	k: 416	n:480000
PACRG   480000 perm   183 sec   (2619 perm/sec)   p_kst 8.666667e-04   p_cons 3.617063e-01   p_joint 1.752083e-03

Joint ci ratio: 1.335534e-01	ci left: 1.637866e-03	ci right 1.874210e-03	k: 859	n:490000
Cons ci ratio: 7.441799e-03	ci left: 3.601913e-01	ci right 3.628838e-01	k: 177153	n:490000
KS ci ratio: 1.900653e-01	ci left: 7.849230e-04	ci right 9.516820e-04	k: 424	n:490000
PACRG   490000 perm   189 sec   (2589 perm/sec)   p_kst 8.653061e-04   p_cons 3.615367e-01   p_joint 1.753061e-03

Joint ci ratio: 1.326320e-01	ci left: 1.628309e-03	ci right 1.861525e-03	k: 871	n:500000
Cons ci ratio: 7.364464e-03	ci left: 3.603640e-01	ci right 3.630296e-01	k: 180848	n:500000
KS ci ratio: 1.887382e-01	ci left: 7.806554e-04	ci right 9.452169e-04	k: 430	n:500000
PACRG   500000 perm   195 sec   (2562 perm/sec)   p_kst 8.600000e-04   p_cons 3.616960e-01   p_joint 1.742000e-03

Joint ci ratio: 1.310628e-01	ci left: 1.636200e-03	ci right 1.867558e-03	k: 892	n:510000
Cons ci ratio: 7.290265e-03	ci left: 3.604810e-01	ci right 3.631206e-01	k: 184518	n:510000
KS ci ratio: 1.865858e-01	ci left: 7.840353e-04	ci right 9.472111e-04	k: 440	n:510000
PACRG   510000 perm   201 sec   (2534 perm/sec)   p_kst 8.627451e-04   p_cons 3.618000e-01   p_joint 1.749020e-03

Joint ci ratio: 1.302638e-01	ci left: 1.625197e-03	ci right 1.853489e-03	k: 903	n:520000
Cons ci ratio: 7.217903e-03	ci left: 3.606167e-01	ci right 3.632309e-01	k: 188200	n:520000
KS ci ratio: 1.851226e-01	ci left: 7.817928e-04	ci right 9.430827e-04	k: 447	n:520000
PACRG   520000 perm   208 sec   (2506 perm/sec)   p_kst 8.596154e-04   p_cons 3.619231e-01   p_joint 1.736538e-03

Joint ci ratio: 1.294792e-01	ci left: 1.614612e-03	ci right 1.839947e-03	k: 914	n:530000
Cons ci ratio: 7.149434e-03	ci left: 3.606325e-01	ci right 3.632219e-01	k: 191821	n:530000
KS ci ratio: 1.840988e-01	ci left: 7.760398e-04	ci right 9.351585e-04	k: 452	n:530000
PACRG   530000 perm   214 sec   (2479 perm/sec)   p_kst 8.528302e-04   p_cons 3.619264e-01   p_joint 1.724528e-03

Joint ci ratio: 1.282929e-01	ci left: 1.615179e-03	ci right 1.838370e-03	k: 931	n:540000
Cons ci ratio: 7.080521e-03	ci left: 3.608013e-01	ci right 3.633668e-01	k: 195525	n:540000
KS ci ratio: 1.828920e-01	ci left: 7.722693e-04	ci right 9.294618e-04	k: 458	n:540000
PACRG   540000 perm   220 sec   (2451 perm/sec)   p_kst 8.481481e-04   p_cons 3.620833e-01   p_joint 1.724074e-03

Joint ci ratio: 1.276110e-01	ci left: 1.603411e-03	ci right 1.823709e-03	k: 941	n:550000
Cons ci ratio: 7.015135e-03	ci left: 3.608605e-01	ci right 3.634027e-01	k: 199172	n:550000
KS ci ratio: 1.822981e-01	ci left: 7.634329e-04	ci right 9.182665e-04	k: 461	n:550000
PACRG   550000 perm   227 sec   (2426 perm/sec)   p_kst 8.381818e-04   p_cons 3.621309e-01   p_joint 1.710909e-03

Joint ci ratio: 1.266735e-01	ci left: 1.598983e-03	ci right 1.816938e-03	k: 955	n:560000
Cons ci ratio: 6.953678e-03	ci left: 3.607750e-01	ci right 3.632942e-01	k: 202739	n:560000
KS ci ratio: 1.805479e-01	ci left: 7.651419e-04	ci right 9.186694e-04	k: 470	n:560000
PACRG   560000 perm   233 sec   (2401 perm/sec)   p_kst 8.392857e-04   p_cons 3.620339e-01   p_joint 1.705357e-03

Joint ci ratio: 1.254329e-01	ci left: 1.603213e-03	ci right 1.819446e-03	k: 974	n:570000
Cons ci ratio: 6.892028e-03	ci left: 3.608118e-01	ci right 3.633089e-01	k: 206374	n:570000
KS ci ratio: 1.794092e-01	ci left: 7.617703e-04	ci right 9.135526e-04	k: 476	n:570000
PACRG   570000 perm   240 sec   (2377 perm/sec)   p_kst 8.350877e-04   p_cons 3.620596e-01   p_joint 1.708772e-03

Joint ci ratio: 1.243535e-01	ci left: 1.603966e-03	ci right 1.818301e-03	k: 991	n:580000
Cons ci ratio: 6.832575e-03	ci left: 3.608078e-01	ci right 3.632832e-01	k: 209986	n:580000
KS ci ratio: 1.775574e-01	ci left: 7.651076e-04	ci right 9.158123e-04	k: 486	n:580000
PACRG   580000 perm   246 sec   (2353 perm/sec)   p_kst 8.379310e-04   p_cons 3.620448e-01   p_joint 1.708621e-03

Joint ci ratio: 1.233015e-01	ci left: 1.604702e-03	ci right 1.817188e-03	k: 1008	n:590000
Cons ci ratio: 6.775207e-03	ci left: 3.607651e-01	ci right 3.632193e-01	k: 213575	n:590000
KS ci ratio: 1.762951e-01	ci left: 7.634786e-04	ci right 9.126795e-04	k: 493	n:590000
PACRG   590000 perm   253 sec   (2329 perm/sec)   p_kst 8.355932e-04   p_cons 3.619915e-01   p_joint 1.708475e-03

Joint ci ratio: 1.220377e-01	ci left: 1.611883e-03	ci right 1.822975e-03	k: 1029	n:600000
Cons ci ratio: 6.717780e-03	ci left: 3.608255e-01	ci right 3.632592e-01	k: 217225	n:600000
KS ci ratio: 1.741916e-01	ci left: 7.698769e-04	ci right 9.183442e-04	k: 505	n:600000
PACRG   600000 perm   260 sec   (2306 perm/sec)   p_kst 8.416667e-04   p_cons 3.620417e-01   p_joint 1.715000e-03

Joint ci ratio: 1.212752e-01	ci left: 1.606121e-03	ci right 1.815050e-03	k: 1042	n:610000
Cons ci ratio: 6.662972e-03	ci left: 3.608020e-01	ci right 3.632157e-01	k: 220825	n:610000
KS ci ratio: 1.731683e-01	ci left: 7.666644e-04	ci right 9.135528e-04	k: 511	n:610000
PACRG   610000 perm   267 sec   (2284 perm/sec)   p_kst 8.377049e-04   p_cons 3.620082e-01   p_joint 1.708197e-03

Joint ci ratio: 1.201853e-01	ci left: 1.609936e-03	ci right 1.817345e-03	k: 1061	n:620000
Cons ci ratio: 6.609069e-03	ci left: 3.608084e-01	ci right 3.632025e-01	k: 224443	n:620000
KS ci ratio: 1.716660e-01	ci left: 7.681886e-04	ci right 9.139599e-04	k: 520	n:620000
PACRG   620000 perm   274 sec   (2261 perm/sec)   p_kst 8.387097e-04   p_cons 3.620048e-01   p_joint 1.711290e-03

Joint ci ratio: 1.190690e-01	ci left: 1.615178e-03	ci right 1.821194e-03	k: 1081	n:630000
Cons ci ratio: 6.555686e-03	ci left: 3.608687e-01	ci right 3.632437e-01	k: 228095	n:630000
KS ci ratio: 1.697221e-01	ci left: 7.742292e-04	ci right 9.193130e-04	k: 532	n:630000
PACRG   630000 perm   281 sec   (2240 perm/sec)   p_kst 8.444444e-04   p_cons 3.620556e-01   p_joint 1.715873e-03

Joint ci ratio: 1.181984e-01	ci left: 1.614199e-03	ci right 1.818479e-03	k: 1097	n:640000
Cons ci ratio: 6.504435e-03	ci left: 3.608662e-01	ci right 3.632226e-01	k: 231708	n:640000
KS ci ratio: 1.681518e-01	ci left: 7.770964e-04	ci right 9.212336e-04	k: 542	n:640000
PACRG   640000 perm   289 sec   (2218 perm/sec)   p_kst 8.468750e-04   p_cons 3.620437e-01   p_joint 1.714063e-03

Joint ci ratio: 1.173466e-01	ci left: 1.613255e-03	ci right 1.815843e-03	k: 1113	n:650000
Cons ci ratio: 6.453550e-03	ci left: 3.609222e-01	ci right 3.632605e-01	k: 235359	n:650000
KS ci ratio: 1.672307e-01	ci left: 7.739843e-04	ci right 9.166787e-04	k: 548	n:650000
PACRG   650000 perm   296 sec   (2198 perm/sec)   p_kst 8.430769e-04   p_cons 3.620908e-01   p_joint 1.712308e-03

Joint ci ratio: 1.163070e-01	ci left: 1.618230e-03	ci right 1.819518e-03	k: 1133	n:660000
Cons ci ratio: 6.402540e-03	ci left: 3.610706e-01	ci right 3.633912e-01	k: 239072	n:660000
KS ci ratio: 1.657280e-01	ci left: 7.767776e-04	ci right 9.185718e-04	k: 558	n:660000
PACRG   660000 perm   303 sec   (2177 perm/sec)   p_kst 8.454545e-04   p_cons 3.622303e-01   p_joint 1.716667e-03

Joint ci ratio: 1.154952e-01	ci left: 1.617265e-03	ci right 1.816934e-03	k: 1149	n:670000
Cons ci ratio: 6.354935e-03	ci left: 3.610535e-01	ci right 3.633567e-01	k: 242677	n:670000
KS ci ratio: 1.645547e-01	ci left: 7.766307e-04	ci right 9.172951e-04	k: 566	n:670000
PACRG   670000 perm   310 sec   (2158 perm/sec)   p_kst 8.447761e-04   p_cons 3.622045e-01   p_joint 1.714925e-03

Joint ci ratio: 1.145526e-01	ci left: 1.620619e-03	ci right 1.818958e-03	k: 1168	n:680000
Cons ci ratio: 6.308558e-03	ci left: 3.610237e-01	ci right 3.633099e-01	k: 246273	n:680000
KS ci ratio: 1.635484e-01	ci left: 7.750811e-04	ci right 9.145219e-04	k: 573	n:680000
PACRG   680000 perm   318 sec   (2140 perm/sec)   p_kst 8.426471e-04   p_cons 3.621662e-01   p_joint 1.717647e-03

Joint ci ratio: 1.137286e-01	ci left: 1.621066e-03	ci right 1.817938e-03	k: 1185	n:690000
Cons ci ratio: 6.262965e-03	ci left: 3.610108e-01	ci right 3.632803e-01	k: 249880	n:690000
KS ci ratio: 1.622811e-01	ci left: 7.763598e-04	ci right 9.148427e-04	k: 582	n:690000
PACRG   690000 perm   325 sec   (2120 perm/sec)   p_kst 8.434783e-04   p_cons 3.621449e-01   p_joint 1.717391e-03

Joint ci ratio: 1.129222e-01	ci left: 1.621506e-03	ci right 1.816941e-03	k: 1202	n:700000
Cons ci ratio: 6.218328e-03	ci left: 3.609997e-01	ci right 3.632529e-01	k: 253488	n:700000
KS ci ratio: 1.609068e-01	ci left: 7.789771e-04	ci right 9.166364e-04	k: 592	n:700000
PACRG   700000 perm   333 sec   (2101 perm/sec)   p_kst 8.457143e-04   p_cons 3.621257e-01   p_joint 1.717143e-03

Joint ci ratio: 1.121327e-01	ci left: 1.621937e-03	ci right 1.815967e-03	k: 1219	n:710000
Cons ci ratio: 6.173540e-03	ci left: 3.610706e-01	ci right 3.633080e-01	k: 257154	n:710000
KS ci ratio: 1.599656e-01	ci left: 7.774688e-04	ci right 9.139807e-04	k: 599	n:710000
PACRG   710000 perm   341 sec   (2081 perm/sec)   p_kst 8.436620e-04   p_cons 3.621887e-01   p_joint 1.716901e-03

Joint ci ratio: 1.112245e-01	ci left: 1.626412e-03	ci right 1.819299e-03	k: 1239	n:720000
Cons ci ratio: 6.130387e-03	ci left: 3.610883e-01	ci right 3.633100e-01	k: 260783	n:720000
KS ci ratio: 1.583891e-01	ci left: 7.826736e-04	ci right 9.186163e-04	k: 611	n:720000
PACRG   720000 perm   349 sec   (2063 perm/sec)   p_kst 8.486111e-04   p_cons 3.621986e-01   p_joint 1.720833e-03

Joint ci ratio: 1.103820e-01	ci left: 1.629439e-03	ci right 1.821125e-03	k: 1258	n:730000
Cons ci ratio: 6.088271e-03	ci left: 3.610946e-01	ci right 3.633011e-01	k: 264404	n:730000
KS ci ratio: 1.567328e-01	ci left: 7.890583e-04	ci right 9.245421e-04	k: 624	n:730000
PACRG   730000 perm   357 sec   (2045 perm/sec)   p_kst 8.547945e-04   p_cons 3.621973e-01   p_joint 1.723288e-03

Joint ci ratio: 1.096012e-01	ci left: 1.631075e-03	ci right 1.821508e-03	k: 1276	n:740000
Cons ci ratio: 6.045509e-03	ci left: 3.612155e-01	ci right 3.634072e-01	k: 268110	n:740000
KS ci ratio: 1.556163e-01	ci left: 7.900823e-04	ci right 9.246853e-04	k: 633	n:740000
PACRG   740000 perm   365 sec   (2027 perm/sec)   p_kst 8.554054e-04   p_cons 3.623108e-01   p_joint 1.724324e-03

Joint ci ratio: 1.085851e-01	ci left: 1.640454e-03	ci right 1.830094e-03	k: 1300	n:750000
Cons ci ratio: 6.004206e-03	ci left: 3.612893e-01	ci right 3.634664e-01	k: 271783	n:750000
KS ci ratio: 1.539255e-01	ci left: 7.974918e-04	ci right 9.317449e-04	k: 647	n:750000
PACRG   750000 perm   373 sec   (2010 perm/sec)   p_kst 8.626667e-04   p_cons 3.623773e-01   p_joint 1.733333e-03

Joint ci ratio: 1.076374e-01	ci left: 1.648315e-03	ci right 1.837095e-03	k: 1323	n:760000
Cons ci ratio: 5.966201e-03	ci left: 3.611706e-01	ci right 3.633331e-01	k: 275311	n:760000
KS ci ratio: 1.531010e-01	ci left: 7.958552e-04	ci right 9.290492e-04	k: 654	n:760000
PACRG   760000 perm   381 sec   (1993 perm/sec)   p_kst 8.605263e-04   p_cons 3.622513e-01   p_joint 1.740789e-03

Joint ci ratio: 1.071131e-01	ci left: 1.643337e-03	ci right 1.830573e-03	k: 1336	n:770000
Cons ci ratio: 5.928008e-03	ci left: 3.611250e-01	ci right 3.632734e-01	k: 278893	n:770000
KS ci ratio: 1.525203e-01	ci left: 7.917645e-04	ci right 9.237254e-04	k: 659	n:770000
PACRG   770000 perm   390 sec   (1976 perm/sec)   p_kst 8.558442e-04   p_cons 3.621987e-01   p_joint 1.735065e-03

Joint ci ratio: 1.063599e-01	ci left: 1.645978e-03	ci right 1.832113e-03	k: 1355	n:780000
Cons ci ratio: 5.891553e-03	ci left: 3.610013e-01	ci right 3.631357e-01	k: 282413	n:780000
KS ci ratio: 1.512647e-01	ci left: 7.951804e-04	ci right 9.265208e-04	k: 670	n:780000
PACRG   780000 perm   398 sec   (1959 perm/sec)   p_kst 8.589744e-04   p_cons 3.620679e-01   p_joint 1.737179e-03

Joint ci ratio: 8.843381e-02	ci left: 2.371269e-03	ci right 2.591898e-03	k: 1959	n:790000
Cons ci ratio: 5.853756e-03	ci left: 3.610388e-01	ci right 3.631597e-01	k: 286058	n:790000
KS ci ratio: 1.502603e-01	ci left: 7.960775e-04	ci right 9.266145e-04	k: 679	n:790000
PACRG   790000 perm   407 sec   (1943 perm/sec)   p_kst 8.594937e-04   p_cons 3.620987e-01   p_joint 2.479747e-03

Joint ci ratio: 8.785297e-02	ci left: 2.373412e-03	ci right 2.592715e-03	k: 1985	n:800000
Cons ci ratio: 5.816110e-03	ci left: 3.611204e-01	ci right 3.632281e-01	k: 289739	n:800000
KS ci ratio: 1.490593e-01	ci left: 7.993617e-04	ci right 9.292963e-04	k: 690	n:800000
PACRG   800000 perm   415 sec   (1926 perm/sec)   p_kst 8.625000e-04   p_cons 3.621738e-01   p_joint 2.481250e-03

Joint ci ratio: 8.754553e-02	ci left: 2.361015e-03	ci right 2.578370e-03	k: 1999	n:810000
Cons ci ratio: 5.780464e-03	ci left: 3.610977e-01	ci right 3.631922e-01	k: 293337	n:810000
KS ci ratio: 1.484166e-01	ci left: 7.966247e-04	ci right 9.255065e-04	k: 696	n:810000
PACRG   810000 perm   424 sec   (1911 perm/sec)   p_kst 8.592593e-04   p_cons 3.621444e-01   p_joint 2.467901e-03

Joint ci ratio: 8.702497e-02	ci left: 2.360851e-03	ci right 2.576834e-03	k: 2023	n:820000
Cons ci ratio: 5.744995e-03	ci left: 3.611133e-01	ci right 3.631950e-01	k: 296966	n:820000
KS ci ratio: 1.478874e-01	ci left: 7.927812e-04	ci right 9.205434e-04	k: 701	n:820000
PACRG   820000 perm   432 sec   (1896 perm/sec)   p_kst 8.548780e-04   p_cons 3.621537e-01   p_joint 2.467073e-03

Joint ci ratio: 8.636576e-02	ci left: 2.368947e-03	ci right 2.583946e-03	k: 2054	n:830000
Cons ci ratio: 5.708577e-03	ci left: 3.612574e-01	ci right 3.633267e-01	k: 300702	n:830000
KS ci ratio: 1.471557e-01	ci left: 7.913520e-04	ci right 9.181974e-04	k: 708	n:830000
PACRG   830000 perm   441 sec   (1881 perm/sec)   p_kst 8.530120e-04   p_cons 3.622916e-01   p_joint 2.474699e-03

Joint ci ratio: 8.580381e-02	ci left: 2.372197e-03	ci right 2.586019e-03	k: 2081	n:840000
Cons ci ratio: 5.674597e-03	ci left: 3.612553e-01	ci right 3.633123e-01	k: 304318	n:840000
KS ci ratio: 1.457235e-01	ci left: 7.979873e-04	ci right 9.245431e-04	k: 722	n:840000
PACRG   840000 perm   450 sec   (1867 perm/sec)   p_kst 8.595238e-04   p_cons 3.622833e-01   p_joint 2.477381e-03

Joint ci ratio: 8.525269e-02	ci left: 2.375374e-03	ci right 2.588039e-03	k: 2108	n:850000
Cons ci ratio: 5.642021e-03	ci left: 3.611875e-01	ci right 3.632322e-01	k: 307878	n:850000
KS ci ratio: 1.448249e-01	ci left: 7.988026e-04	ci right 9.246389e-04	k: 731	n:850000
PACRG   850000 perm   459 sec   (1852 perm/sec)   p_kst 8.600000e-04   p_cons 3.622094e-01   p_joint 2.480000e-03

Joint ci ratio: 8.481162e-02	ci left: 2.372790e-03	ci right 2.584071e-03	k: 2130	n:860000
Cons ci ratio: 5.608997e-03	ci left: 3.612038e-01	ci right 3.632366e-01	k: 311509	n:860000
KS ci ratio: 1.438455e-01	ci left: 8.007223e-04	ci right 9.259348e-04	k: 741	n:860000
PACRG   860000 perm   468 sec   (1838 perm/sec)   p_kst 8.616279e-04   p_cons 3.622198e-01   p_joint 2.476744e-03

Joint ci ratio: 8.435769e-02	ci left: 2.371395e-03	ci right 2.581365e-03	k: 2153	n:870000
Cons ci ratio: 5.575132e-03	ci left: 3.613370e-01	ci right 3.633582e-01	k: 315242	n:870000
KS ci ratio: 1.431719e-01	ci left: 7.992756e-04	ci right 9.236266e-04	k: 748	n:870000
PACRG   870000 perm   477 sec   (1824 perm/sec)   p_kst 8.597701e-04   p_cons 3.623471e-01   p_joint 2.474713e-03

Joint ci ratio: 8.391097e-02	ci left: 2.370033e-03	ci right 2.578718e-03	k: 2176	n:880000
Cons ci ratio: 5.544448e-03	ci left: 3.612525e-01	ci right 3.632621e-01	k: 318786	n:880000
KS ci ratio: 1.424134e-01	ci left: 7.989591e-04	ci right 9.225463e-04	k: 756	n:880000
PACRG   880000 perm   486 sec   (1811 perm/sec)   p_kst 8.590909e-04   p_cons 3.622568e-01   p_joint 2.472727e-03

Joint ci ratio: 8.337635e-02	ci left: 2.374206e-03	ci right 2.581862e-03	k: 2204	n:890000
Cons ci ratio: 5.513447e-03	ci left: 3.612384e-01	ci right 3.632367e-01	k: 322391	n:890000
KS ci ratio: 1.416669e-01	ci left: 7.986513e-04	ci right 9.214886e-04	k: 764	n:890000
PACRG   890000 perm   495 sec   (1797 perm/sec)   p_kst 8.584270e-04   p_cons 3.622371e-01   p_joint 2.476404e-03

Joint ci ratio: 8.296363e-02	ci left: 2.371762e-03	ci right 2.578127e-03	k: 2226	n:900000
Cons ci ratio: 5.482183e-03	ci left: 3.612902e-01	ci right 3.632774e-01	k: 326055	n:900000
KS ci ratio: 1.409320e-01	ci left: 7.983520e-04	ci right 9.204528e-04	k: 772	n:900000
PACRG   900000 perm   505 sec   (1784 perm/sec)   p_kst 8.577778e-04   p_cons 3.622833e-01   p_joint 2.473333e-03

Joint ci ratio: 8.241017e-02	ci left: 2.377985e-03	ci right 2.583444e-03	k: 2256	n:910000
Cons ci ratio: 5.452157e-03	ci left: 3.612805e-01	ci right 3.632567e-01	k: 329664	n:910000
KS ci ratio: 1.398504e-01	ci left: 8.023027e-04	ci right 9.239875e-04	k: 784	n:910000
PACRG   910000 perm   514 sec   (1770 perm/sec)   p_kst 8.615385e-04   p_cons 3.622681e-01   p_joint 2.479121e-03

Joint ci ratio: 8.193951e-02	ci left: 2.379817e-03	ci right 2.584205e-03	k: 2282	n:920000
Cons ci ratio: 5.423168e-03	ci left: 3.612243e-01	ci right 3.631896e-01	k: 333230	n:920000
KS ci ratio: 1.393191e-01	ci left: 7.998759e-04	ci right 9.206936e-04	k: 790	n:920000
PACRG   920000 perm   524 sec   (1757 perm/sec)   p_kst 8.586957e-04   p_cons 3.622065e-01   p_joint 2.480435e-03

Joint ci ratio: 8.154766e-02	ci left: 2.377400e-03	ci right 2.580557e-03	k: 2304	n:930000
Cons ci ratio: 5.394021e-03	ci left: 3.612220e-01	ci right 3.631767e-01	k: 336845	n:930000
KS ci ratio: 1.387939e-01	ci left: 7.975022e-04	ci right 9.174697e-04	k: 796	n:930000
PACRG   930000 perm   533 sec   (1744 perm/sec)   p_kst 8.559140e-04   p_cons 3.621989e-01   p_joint 2.477419e-03

Joint ci ratio: 8.086580e-02	ci left: 2.392756e-03	ci right 2.595435e-03	k: 2343	n:940000
Cons ci ratio: 5.365068e-03	ci left: 3.612431e-01	ci right 3.631875e-01	k: 340482	n:940000
KS ci ratio: 1.378458e-01	ci left: 8.003154e-04	ci right 9.198161e-04	k: 807	n:940000
PACRG   940000 perm   543 sec   (1731 perm/sec)   p_kst 8.585106e-04   p_cons 3.622149e-01   p_joint 2.492553e-03

Joint ci ratio: 9.589726e-02	ci left: 1.671572e-03	ci right 1.840963e-03	k: 1667	n:950000
Cons ci ratio: 5.335919e-03	ci left: 3.613207e-01	ci right 3.632549e-01	k: 344173	n:950000
KS ci ratio: 1.371684e-01	ci left: 8.000224e-04	ci right 9.188444e-04	k: 815	n:950000
PACRG   950000 perm   553 sec   (1718 perm/sec)   p_kst 8.578947e-04   p_cons 3.622874e-01   p_joint 1.754737e-03

Joint ci ratio: 9.529906e-02	ci left: 1.675512e-03	ci right 1.844184e-03	k: 1688	n:960000
Cons ci ratio: 5.307874e-03	ci left: 3.613415e-01	ci right 3.632656e-01	k: 347811	n:960000
KS ci ratio: 1.364182e-01	ci left: 8.007430e-04	ci right 9.189687e-04	k: 824	n:960000
PACRG   960000 perm   563 sec   (1706 perm/sec)   p_kst 8.583333e-04   p_cons 3.623031e-01   p_joint 1.758333e-03

Joint ci ratio: 9.487881e-02	ci left: 1.673335e-03	ci right 1.841003e-03	k: 1703	n:970000
Cons ci ratio: 5.280785e-03	ci left: 3.613166e-01	ci right 3.632306e-01	k: 351405	n:970000
KS ci ratio: 1.357615e-01	ci left: 8.004545e-04	ci right 9.180229e-04	k: 832	n:970000
PACRG   970000 perm   573 sec   (1694 perm/sec)   p_kst 8.577320e-04   p_cons 3.622732e-01   p_joint 1.755670e-03

Joint ci ratio: 9.435417e-02	ci left: 1.675189e-03	ci right 1.842064e-03	k: 1722	n:980000
Cons ci ratio: 5.252633e-03	ci left: 3.614217e-01	ci right 3.633261e-01	k: 355126	n:980000
KS ci ratio: 1.350340e-01	ci left: 8.011592e-04	ci right 9.181499e-04	k: 841	n:980000
PACRG   980000 perm   583 sec   (1682 perm/sec)   p_kst 8.581633e-04   p_cons 3.623735e-01   p_joint 1.757143e-03

Joint ci ratio: 7.871231e-02	ci left: 2.400604e-03	ci right 2.598285e-03	k: 2473	n:990000
Cons ci ratio: 5.225612e-03	ci left: 3.614641e-01	ci right 3.633589e-01	k: 358787	n:990000
KS ci ratio: 1.341603e-01	ci left: 8.038037e-04	ci right 9.203606e-04	k: 852	n:990000
PACRG   990000 perm   593 sec   (1670 perm/sec)   p_kst 8.606061e-04   p_cons 3.624111e-01   p_joint 2.497980e-03

Joint ci ratio: 7.830190e-02	ci left: 2.402087e-03	ci right 2.598812e-03	k: 2499	n:1000000
Cons ci ratio: 5.199836e-03	ci left: 3.614318e-01	ci right 3.633170e-01	k: 362374	n:1000000
KS ci ratio: 1.333034e-01	ci left: 8.063978e-04	ci right 9.225247e-04	k: 863	n:1000000
PACRG   1000000 perm   603 sec   (1659 perm/sec)   p_kst 8.630000e-04   p_cons 3.623740e-01   p_joint 2.499000e-03

Joint ci ratio: 9.285709e-02	ci left: 1.679579e-03	ci right 1.844092e-03	k: 1778	n:1010000
Cons ci ratio: 5.174072e-03	ci left: 3.614327e-01	ci right 3.633086e-01	k: 365994	n:1010000
KS ci ratio: 1.326906e-01	ci left: 8.060709e-04	ci right 9.215750e-04	k: 871	n:1010000
PACRG   1010000 perm   613 sec   (1648 perm/sec)   p_kst 8.623762e-04   p_cons 3.623703e-01   p_joint 1.760396e-03

Joint ci ratio: 9.262348e-02	ci left: 1.671731e-03	ci right 1.835041e-03	k: 1787	n:1020000
Cons ci ratio: 5.148086e-03	ci left: 3.614876e-01	ci right 3.633543e-01	k: 369669	n:1020000
KS ci ratio: 1.323120e-01	ci left: 8.029076e-04	ci right 9.176044e-04	k: 876	n:1020000
PACRG   1020000 perm   623 sec   (1636 perm/sec)   p_kst 8.588235e-04   p_cons 3.624206e-01   p_joint 1.751961e-03

Joint ci ratio: 9.231447e-02	ci left: 1.666881e-03	ci right 1.829145e-03	k: 1799	n:1030000
Cons ci ratio: 5.123370e-03	ci left: 3.614619e-01	ci right 3.633195e-01	k: 373262	n:1030000
KS ci ratio: 1.317872e-01	ci left: 8.016840e-04	ci right 9.157162e-04	k: 883	n:1030000
PACRG   1030000 perm   634 sec   (1625 perm/sec)   p_kst 8.572816e-04   p_cons 3.623903e-01   p_joint 1.746602e-03

Joint ci ratio: 9.183101e-02	ci left: 1.668702e-03	ci right 1.830247e-03	k: 1818	n:1040000
Cons ci ratio: 5.099347e-03	ci left: 3.614059e-01	ci right 3.632545e-01	k: 376823	n:1040000
KS ci ratio: 1.311214e-01	ci left: 8.023447e-04	ci right 9.158494e-04	k: 892	n:1040000
PACRG   1040000 perm   645 sec   (1614 perm/sec)   p_kst 8.576923e-04   p_cons 3.623298e-01   p_joint 1.748077e-03

Joint ci ratio: 9.142985e-02	ci left: 1.667699e-03	ci right 1.828403e-03	k: 1834	n:1050000
Cons ci ratio: 5.076003e-03	ci left: 3.613196e-01	ci right 3.631593e-01	k: 380351	n:1050000
KS ci ratio: 1.303933e-01	ci left: 8.039157e-04	ci right 9.169622e-04	k: 902	n:1050000
PACRG   1050000 perm   655 sec   (1602 perm/sec)   p_kst 8.590476e-04   p_cons 3.622390e-01   p_joint 1.746667e-03

Joint ci ratio: 9.096009e-02	ci left: 1.669481e-03	ci right 1.829487e-03	k: 1853	n:1060000
Cons ci ratio: 5.052100e-03	ci left: 3.613151e-01	ci right 3.631460e-01	k: 383964	n:1060000
KS ci ratio: 1.297483e-01	ci left: 8.045459e-04	ci right 9.170783e-04	k: 911	n:1060000
PACRG   1060000 perm   666 sec   (1592 perm/sec)   p_kst 8.594340e-04   p_cons 3.622302e-01   p_joint 1.748113e-03

Joint ci ratio: 9.047330e-02	ci left: 1.672146e-03	ci right 1.831505e-03	k: 1873	n:1070000
Cons ci ratio: 5.028664e-03	ci left: 3.612986e-01	ci right 3.631209e-01	k: 387564	n:1070000
KS ci ratio: 1.289726e-01	ci left: 8.069745e-04	ci right 9.191202e-04	k: 922	n:1070000
PACRG   1070000 perm   677 sec   (1581 perm/sec)   p_kst 8.616822e-04   p_cons 3.622093e-01   p_joint 1.750467e-03

Joint ci ratio: 9.016130e-02	ci left: 1.668429e-03	ci right 1.826855e-03	k: 1886	n:1080000
Cons ci ratio: 5.005139e-03	ci left: 3.613203e-01	ci right 3.631342e-01	k: 391205	n:1080000
KS ci ratio: 1.286249e-01	ci left: 8.039829e-04	ci right 9.153887e-04	k: 927	n:1080000
PACRG   1080000 perm   688 sec   (1570 perm/sec)   p_kst 8.583333e-04   p_cons 3.622269e-01   p_joint 1.746296e-03

Joint ci ratio: 8.971073e-02	ci left: 1.670161e-03	ci right 1.827918e-03	k: 1905	n:1090000
Cons ci ratio: 4.981833e-03	ci left: 3.613517e-01	ci right 3.631573e-01	k: 394857	n:1090000
KS ci ratio: 1.281427e-01	ci left: 8.028227e-04	ci right 9.136188e-04	k: 934	n:1090000
PACRG   1090000 perm   699 sec   (1560 perm/sec)   p_kst 8.568807e-04   p_cons 3.622541e-01   p_joint 1.747706e-03

Joint ci ratio: 8.933660e-02	ci left: 1.669198e-03	ci right 1.826172e-03	k: 1921	n:1100000
Cons ci ratio: 4.958986e-03	ci left: 3.613699e-01	ci right 3.631672e-01	k: 398495	n:1100000
KS ci ratio: 1.273953e-01	ci left: 8.052047e-04	ci right 9.156326e-04	k: 945	n:1100000
PACRG   1100000 perm   710 sec   (1550 perm/sec)   p_kst 8.590909e-04   p_cons 3.622682e-01   p_joint 1.746364e-03

Joint ci ratio: 8.901314e-02	ci left: 1.666491e-03	ci right 1.822614e-03	k: 1935	n:1110000
Cons ci ratio: 4.936354e-03	ci left: 3.613967e-01	ci right 3.631860e-01	k: 402143	n:1110000
KS ci ratio: 1.270602e-01	ci left: 8.023117e-04	ci right 9.120315e-04	k: 950	n:1110000
PACRG   1110000 perm   721 sec   (1539 perm/sec)   p_kst 8.558559e-04   p_cons 3.622910e-01   p_joint 1.743243e-03

Joint ci ratio: 8.853413e-02	ci left: 1.669946e-03	ci right 1.825506e-03	k: 1956	n:1120000
Cons ci ratio: 4.914352e-03	ci left: 3.613928e-01	ci right 3.631740e-01	k: 405757	n:1120000
KS ci ratio: 1.266614e-01	ci left: 8.003353e-04	ci right 9.094155e-04	k: 956	n:1120000
PACRG   1120000 perm   732 sec   (1529 perm/sec)   p_kst 8.535714e-04   p_cons 3.622830e-01   p_joint 1.746429e-03

Joint ci ratio: 8.812974e-02	ci left: 1.670745e-03	ci right 1.825632e-03	k: 1974	n:1130000
Cons ci ratio: 4.892801e-03	ci left: 3.613739e-01	ci right 3.631472e-01	k: 409354	n:1130000
KS ci ratio: 1.261353e-01	ci left: 8.001084e-04	ci right 9.086710e-04	k: 964	n:1130000
PACRG   1130000 perm   744 sec   (1519 perm/sec)   p_kst 8.530973e-04   p_cons 3.622602e-01   p_joint 1.746903e-03

Joint ci ratio: 8.775289e-02	ci left: 1.670673e-03	ci right 1.824858e-03	k: 1991	n:1140000
Cons ci ratio: 4.871595e-03	ci left: 3.613492e-01	ci right 3.631147e-01	k: 412944	n:1140000
KS ci ratio: 1.256157e-01	ci left: 7.998865e-04	ci right 9.079386e-04	k: 972	n:1140000
PACRG   1140000 perm   755 sec   (1510 perm/sec)   p_kst 8.526316e-04   p_cons 3.622316e-01   p_joint 1.746491e-03

Joint ci ratio: 8.733731e-02	ci left: 1.672306e-03	ci right 1.825873e-03	k: 2010	n:1150000
Cons ci ratio: 4.850106e-03	ci left: 3.613780e-01	ci right 3.631358e-01	k: 416595	n:1150000
KS ci ratio: 1.249751e-01	ci left: 8.013541e-04	ci right 9.090115e-04	k: 982	n:1150000
PACRG   1150000 perm   767 sec   (1500 perm/sec)   p_kst 8.539130e-04   p_cons 3.622565e-01   p_joint 1.747826e-03

Joint ci ratio: 8.692757e-02	ci left: 1.673912e-03	ci right 1.826869e-03	k: 2029	n:1160000
Cons ci ratio: 4.828548e-03	ci left: 3.614399e-01	ci right 3.631901e-01	k: 420285	n:1160000
KS ci ratio: 1.244696e-01	ci left: 8.011273e-04	ci right 9.082868e-04	k: 990	n:1160000
PACRG   1160000 perm   778 sec   (1490 perm/sec)   p_kst 8.534483e-04   p_cons 3.623147e-01   p_joint 1.749138e-03

Joint ci ratio: 8.662949e-02	ci left: 1.671311e-03	ci right 1.823480e-03	k: 2043	n:1170000
Cons ci ratio: 4.807737e-03	ci left: 3.614563e-01	ci right 3.631991e-01	k: 423923	n:1170000
KS ci ratio: 1.239082e-01	ci left: 8.017334e-04	ci right 9.084548e-04	k: 999	n:1170000
PACRG   1170000 perm   790 sec   (1481 perm/sec)   p_kst 8.538462e-04   p_cons 3.623274e-01   p_joint 1.746154e-03

Joint ci ratio: 8.620866e-02	ci left: 1.673730e-03	ci right 1.825342e-03	k: 2063	n:1180000
Cons ci ratio: 4.787447e-03	ci left: 3.614479e-01	ci right 3.631833e-01	k: 427532	n:1180000
KS ci ratio: 1.232932e-01	ci left: 8.031516e-04	ci right 9.094924e-04	k: 1009	n:1180000
PACRG   1180000 perm   802 sec   (1472 perm/sec)   p_kst 8.550847e-04   p_cons 3.623153e-01   p_joint 1.748305e-03

Joint ci ratio: 8.595934e-02	ci left: 1.669532e-03	ci right 1.820305e-03	k: 2075	n:1190000
Cons ci ratio: 4.767195e-03	ci left: 3.614607e-01	ci right 3.631887e-01	k: 431166	n:1190000
KS ci ratio: 1.227475e-01	ci left: 8.037328e-04	ci right 9.096453e-04	k: 1018	n:1190000
PACRG   1190000 perm   814 sec   (1462 perm/sec)   p_kst 8.554622e-04   p_cons 3.623244e-01   p_joint 1.743697e-03

Joint ci ratio: 8.556860e-02	ci left: 1.671113e-03	ci right 1.821308e-03	k: 2094	n:1200000
Cons ci ratio: 4.747935e-03	ci left: 3.614016e-01	ci right 3.631224e-01	k: 434714	n:1200000
KS ci ratio: 1.220902e-01	ci left: 8.059210e-04	ci right 9.115121e-04	k: 1029	n:1200000
PACRG   1200000 perm   826 sec   (1453 perm/sec)   p_kst 8.575000e-04   p_cons 3.622617e-01   p_joint 1.745000e-03

Joint ci ratio: 8.508241e-02	ci left: 1.676714e-03	ci right 1.826514e-03	k: 2118	n:1210000
Cons ci ratio: 4.728474e-03	ci left: 3.613857e-01	ci right 3.630993e-01	k: 438313	n:1210000
KS ci ratio: 1.214433e-01	ci left: 8.080746e-04	ci right 9.133465e-04	k: 1040	n:1210000
PACRG   1210000 perm   838 sec   (1445 perm/sec)   p_kst 8.595041e-04   p_cons 3.622421e-01   p_joint 1.750413e-03

Joint ci ratio: 8.482278e-02	ci left: 1.673400e-03	ci right 1.822424e-03	k: 2131	n:1220000
Cons ci ratio: 4.709026e-03	ci left: 3.613921e-01	ci right 3.630987e-01	k: 441939	n:1220000
KS ci ratio: 1.209794e-01	ci left: 8.078096e-04	ci right 9.126162e-04	k: 1048	n:1220000
PACRG   1220000 perm   849 sec   (1436 perm/sec)   p_kst 8.590164e-04   p_cons 3.622451e-01   p_joint 1.746721e-03

Joint ci ratio: 8.444727e-02	ci left: 1.674915e-03	ci right 1.823382e-03	k: 2150	n:1230000
Cons ci ratio: 4.690434e-03	ci left: 3.613375e-01	ci right 3.630371e-01	k: 445490	n:1230000
KS ci ratio: 1.201798e-01	ci left: 8.122809e-04	ci right 9.169217e-04	k: 1062	n:1230000
PACRG   1230000 perm   861 sec   (1428 perm/sec)   p_kst 8.634146e-04   p_cons 3.621870e-01   p_joint 1.747967e-03

Joint ci ratio: 8.413499e-02	ci left: 1.674039e-03	ci right 1.821852e-03	k: 2166	n:1240000
Cons ci ratio: 4.670878e-03	ci left: 3.614007e-01	ci right 3.630935e-01	k: 449186	n:1240000
KS ci ratio: 1.198983e-01	ci left: 8.096414e-04	ci right 9.136805e-04	k: 1067	n:1240000
PACRG   1240000 perm   873 sec   (1420 perm/sec)   p_kst 8.604839e-04   p_cons 3.622468e-01   p_joint 1.746774e-03

Joint ci ratio: 8.376850e-02	ci left: 1.675528e-03	ci right 1.822796e-03	k: 2185	n:1250000
Cons ci ratio: 4.652145e-03	ci left: 3.614053e-01	ci right 3.630913e-01	k: 452810	n:1250000
KS ci ratio: 1.195631e-01	ci left: 8.078205e-04	ci right 9.113148e-04	k: 1073	n:1250000
PACRG   1250000 perm   886 sec   (1411 perm/sec)   p_kst 8.584000e-04   p_cons 3.622480e-01   p_joint 1.748000e-03

Joint ci ratio: 8.342571e-02	ci left: 1.676217e-03	ci right 1.822914e-03	k: 2203	n:1260000
Cons ci ratio: 4.633731e-03	ci left: 3.614004e-01	ci right 3.630796e-01	k: 456422	n:1260000
KS ci ratio: 1.191203e-01	ci left: 8.075689e-04	ci right 9.106208e-04	k: 1081	n:1260000
PACRG   1260000 perm   898 sec   (1403 perm/sec)   p_kst 8.579365e-04   p_cons 3.622397e-01   p_joint 1.748413e-03

Joint ci ratio: 8.304967e-02	ci left: 1.678439e-03	ci right 1.824636e-03	k: 2223	n:1270000
Cons ci ratio: 4.615400e-03	ci left: 3.614089e-01	ci right 3.630815e-01	k: 460051	n:1270000
KS ci ratio: 1.184109e-01	ci left: 8.111423e-04	ci right 9.139906e-04	k: 1094	n:1270000
PACRG   1270000 perm   911 sec   (1395 perm/sec)   p_kst 8.614173e-04   p_cons 3.622449e-01   p_joint 1.750394e-03

Joint ci ratio: 8.275258e-02	ci left: 1.677567e-03	ci right 1.823140e-03	k: 2239	n:1280000
Cons ci ratio: 4.596888e-03	ci left: 3.614571e-01	ci right 3.631232e-01	k: 463731	n:1280000
KS ci ratio: 1.180343e-01	ci left: 8.101122e-04	ci right 9.124805e-04	k: 1101	n:1280000
PACRG   1280000 perm   923 sec   (1387 perm/sec)   p_kst 8.601563e-04   p_cons 3.622898e-01   p_joint 1.749219e-03

Joint ci ratio: 8.236727e-02	ci left: 1.680505e-03	ci right 1.825622e-03	k: 2260	n:1290000
Cons ci ratio: 4.578736e-03	ci left: 3.614906e-01	ci right 3.631503e-01	k: 467393	n:1290000
KS ci ratio: 1.176082e-01	ci left: 8.098511e-04	ci right 9.117913e-04	k: 1109	n:1290000
PACRG   1290000 perm   936 sec   (1379 perm/sec)   p_kst 8.596899e-04   p_cons 3.623202e-01   p_joint 1.751938e-03

Joint ci ratio: 8.211356e-02	ci left: 1.678126e-03	ci right 1.822570e-03	k: 2274	n:1300000
Cons ci ratio: 4.560676e-03	ci left: 3.615359e-01	ci right 3.631893e-01	k: 471071	n:1300000
KS ci ratio: 1.172391e-01	ci left: 8.088479e-04	ci right 9.103202e-04	k: 1116	n:1300000
PACRG   1300000 perm   948 sec   (1371 perm/sec)   p_kst 8.584615e-04   p_cons 3.623623e-01   p_joint 1.749231e-03

Joint ci ratio: 8.180848e-02	ci left: 1.678027e-03	ci right 1.821900e-03	k: 2291	n:1310000
Cons ci ratio: 4.543210e-03	ci left: 3.615417e-01	ci right 3.631887e-01	k: 474698	n:1310000
KS ci ratio: 1.168216e-01	ci left: 8.086016e-04	ci right 9.096568e-04	k: 1124	n:1310000
PACRG   1310000 perm   961 sec   (1364 perm/sec)   p_kst 8.580153e-04   p_cons 3.623649e-01   p_joint 1.748855e-03

Joint ci ratio: 8.150678e-02	ci left: 1.677930e-03	ci right 1.821240e-03	k: 2308	n:1320000
Cons ci ratio: 4.526047e-03	ci left: 3.615367e-01	ci right 3.631775e-01	k: 478311	n:1320000
KS ci ratio: 1.164084e-01	ci left: 8.083596e-04	ci right 9.090027e-04	k: 1132	n:1320000
PACRG   1320000 perm   974 sec   (1356 perm/sec)   p_kst 8.575758e-04   p_cons 3.623568e-01   p_joint 1.748485e-03

Joint ci ratio: 8.129598e-02	ci left: 1.674153e-03	ci right 1.816752e-03	k: 2320	n:1330000
Cons ci ratio: 4.509694e-03	ci left: 3.614688e-01	ci right 3.631033e-01	k: 481840	n:1330000
KS ci ratio: 1.159997e-01	ci left: 8.081219e-04	ci right 9.083579e-04	k: 1140	n:1330000
PACRG   1330000 perm   987 sec   (1348 perm/sec)   p_kst 8.571429e-04   p_cons 3.622857e-01   p_joint 1.744361e-03

Joint ci ratio: 8.099989e-02	ci left: 1.674089e-03	ci right 1.816138e-03	k: 2337	n:1340000
Cons ci ratio: 4.492667e-03	ci left: 3.614891e-01	ci right 3.631175e-01	k: 485486	n:1340000
KS ci ratio: 1.155952e-01	ci left: 8.078884e-04	ci right 9.077222e-04	k: 1148	n:1340000
PACRG   1340000 perm   1000 sec   (1340 perm/sec)   p_kst 8.567164e-04   p_cons 3.623030e-01   p_joint 1.744030e-03

Joint ci ratio: 8.079298e-02	ci left: 1.670397e-03	ci right 1.811754e-03	k: 2349	n:1350000
Cons ci ratio: 4.476449e-03	ci left: 3.614454e-01	ci right 3.630678e-01	k: 489046	n:1350000
KS ci ratio: 1.154448e-01	ci left: 8.040619e-04	ci right 9.032848e-04	k: 1151	n:1350000
PACRG   1350000 perm   1013 sec   (1333 perm/sec)   p_kst 8.525926e-04   p_cons 3.622563e-01   p_joint 1.740000e-03

Joint ci ratio: 8.053643e-02	ci left: 1.668921e-03	ci right 1.809685e-03	k: 2364	n:1360000
Cons ci ratio: 4.459262e-03	ci left: 3.615208e-01	ci right 3.631372e-01	k: 492767	n:1360000
KS ci ratio: 1.150460e-01	ci left: 8.038625e-04	ci right 9.026949e-04	k: 1159	n:1360000
PACRG   1360000 perm   1026 sec   (1325 perm/sec)   p_kst 8.522059e-04   p_cons 3.623287e-01   p_joint 1.738235e-03

Joint ci ratio: 8.029921e-02	ci left: 1.666753e-03	ci right 1.806900e-03	k: 2378	n:1370000
Cons ci ratio: 4.443030e-03	ci left: 3.615162e-01	ci right 3.631267e-01	k: 496380	n:1370000
KS ci ratio: 1.147005e-01	ci left: 8.029575e-04	ci right 9.013621e-04	k: 1166	n:1370000
PACRG   1370000 perm   1039 sec   (1318 perm/sec)   p_kst 8.510949e-04   p_cons 3.623212e-01   p_joint 1.735766e-03

Joint ci ratio: 8.013119e-02	ci left: 1.661776e-03	ci right 1.801198e-03	k: 2388	n:1380000
Cons ci ratio: 4.427481e-03	ci left: 3.614589e-01	ci right 3.630635e-01	k: 499920	n:1380000
KS ci ratio: 1.145536e-01	ci left: 7.992505e-04	ci right 8.970668e-04	k: 1169	n:1380000
PACRG   1380000 perm   1053 sec   (1311 perm/sec)   p_kst 8.471014e-04   p_cons 3.622609e-01   p_joint 1.730435e-03

Joint ci ratio: 7.991418e-02	ci left: 1.658986e-03	ci right 1.797780e-03	k: 2401	n:1390000
Cons ci ratio: 4.411757e-03	ci left: 3.614376e-01	ci right 3.630364e-01	k: 503509	n:1390000
KS ci ratio: 1.142611e-01	ci left: 7.976935e-04	ci right 8.950532e-04	k: 1175	n:1390000
PACRG   1390000 perm   1066 sec   (1304 perm/sec)   p_kst 8.453237e-04   p_cons 3.622367e-01   p_joint 1.727338e-03

Joint ci ratio: 7.968240e-02	ci left: 1.656936e-03	ci right 1.795138e-03	k: 2415	n:1400000
Cons ci ratio: 4.396267e-03	ci left: 3.614095e-01	ci right 3.630025e-01	k: 507088	n:1400000
KS ci ratio: 1.140191e-01	ci left: 7.954651e-04	ci right 8.923333e-04	k: 1180	n:1400000
PACRG   1400000 perm   1080 sec   (1296 perm/sec)   p_kst 8.428571e-04   p_cons 3.622057e-01   p_joint 1.725000e-03

Joint ci ratio: 7.927309e-02	ci left: 1.662563e-03	ci right 1.800489e-03	k: 2440	n:1410000
Cons ci ratio: 4.380401e-03	ci left: 3.614385e-01	ci right 3.630259e-01	k: 510747	n:1410000
KS ci ratio: 1.132542e-01	ci left: 8.008486e-04	ci right 8.976745e-04	k: 1196	n:1410000
PACRG   1410000 perm   1094 sec   (1289 perm/sec)   p_kst 8.482270e-04   p_cons 3.622319e-01   p_joint 1.730496e-03

Joint ci ratio: 7.903070e-02	ci left: 1.661209e-03	ci right 1.798582e-03	k: 2455	n:1420000
Cons ci ratio: 4.364919e-03	ci left: 3.614446e-01	ci right 3.630264e-01	k: 514374	n:1420000
KS ci ratio: 1.130186e-01	ci left: 7.986303e-04	ci right 8.949736e-04	k: 1201	n:1420000
PACRG   1420000 perm   1107 sec   (1282 perm/sec)   p_kst 8.457746e-04   p_cons 3.622352e-01   p_joint 1.728873e-03

Joint ci ratio: 7.882249e-02	ci left: 1.658504e-03	ci right 1.795275e-03	k: 2468	n:1430000
Cons ci ratio: 4.350561e-03	ci left: 3.613486e-01	ci right 3.629247e-01	k: 517855	n:1430000
KS ci ratio: 1.127376e-01	ci left: 7.971227e-04	ci right 8.930293e-04	k: 1207	n:1430000
PACRG   1430000 perm   1122 sec   (1275 perm/sec)   p_kst 8.440559e-04   p_cons 3.621364e-01   p_joint 1.725874e-03

Joint ci ratio: 7.855253e-02	ci left: 1.658560e-03	ci right 1.794846e-03	k: 2485	n:1440000
Cons ci ratio: 4.335607e-03	ci left: 3.613323e-01	ci right 3.629030e-01	k: 521449	n:1440000
KS ci ratio: 1.123200e-01	ci left: 7.976613e-04	ci right 8.932536e-04	k: 1216	n:1440000
PACRG   1440000 perm   1136 sec   (1268 perm/sec)   p_kst 8.444444e-04   p_cons 3.621174e-01   p_joint 1.725694e-03

Joint ci ratio: 7.820711e-02	ci left: 1.661997e-03	ci right 1.797937e-03	k: 2507	n:1450000
Cons ci ratio: 4.320419e-03	ci left: 3.613576e-01	ci right 3.629229e-01	k: 525103	n:1450000
KS ci ratio: 1.118613e-01	ci left: 7.988634e-04	ci right 8.941830e-04	k: 1226	n:1450000
PACRG   1450000 perm   1149 sec   (1262 perm/sec)   p_kst 8.455172e-04   p_cons 3.621400e-01   p_joint 1.728966e-03

Joint ci ratio: 7.798983e-02	ci left: 1.660015e-03	ci right 1.795399e-03	k: 2521	n:1460000
Cons ci ratio: 4.305607e-03	ci left: 3.613594e-01	ci right 3.629193e-01	k: 528723	n:1460000
KS ci ratio: 1.115436e-01	ci left: 7.980523e-04	ci right 8.929869e-04	k: 1233	n:1460000
PACRG   1460000 perm   1163 sec   (1255 perm/sec)   p_kst 8.445205e-04   p_cons 3.621390e-01   p_joint 1.726712e-03

Joint ci ratio: 7.772830e-02	ci left: 1.660062e-03	ci right 1.794975e-03	k: 2538	n:1470000
Cons ci ratio: 4.290901e-03	ci left: 3.613658e-01	ci right 3.629204e-01	k: 532350	n:1470000
KS ci ratio: 1.112735e-01	ci left: 7.965912e-04	ci right 8.911075e-04	k: 1239	n:1470000
PACRG   1470000 perm   1177 sec   (1249 perm/sec)   p_kst 8.428571e-04   p_cons 3.621429e-01   p_joint 1.726531e-03

Joint ci ratio: 7.753019e-02	ci left: 1.657458e-03	ci right 1.791801e-03	k: 2551	n:1480000
Cons ci ratio: 4.276121e-03	ci left: 3.613965e-01	ci right 3.629459e-01	k: 536013	n:1480000
KS ci ratio: 1.109608e-01	ci left: 7.958071e-04	ci right 8.899477e-04	k: 1246	n:1480000
PACRG   1480000 perm   1191 sec   (1242 perm/sec)   p_kst 8.418919e-04   p_cons 3.621709e-01   p_joint 1.723649e-03

Joint ci ratio: 7.722809e-02	ci left: 1.659498e-03	ci right 1.793458e-03	k: 2571	n:1490000
Cons ci ratio: 4.261931e-03	ci left: 3.613792e-01	ci right 3.629233e-01	k: 539605	n:1490000
KS ci ratio: 1.106066e-01	ci left: 7.956865e-04	ci right 8.894927e-04	k: 1254	n:1490000
PACRG   1490000 perm   1206 sec   (1236 perm/sec)   p_kst 8.416107e-04   p_cons 3.621510e-01   p_joint 1.725503e-03

Joint ci ratio: 7.692949e-02	ci left: 1.661511e-03	ci right 1.795092e-03	k: 2591	n:1500000
Cons ci ratio: 4.247489e-03	ci left: 3.614048e-01	ci right 3.629438e-01	k: 543261	n:1500000
KS ci ratio: 1.102558e-01	ci left: 7.955679e-04	ci right 8.890433e-04	k: 1262	n:1500000
PACRG   1500000 perm   1220 sec   (1229 perm/sec)   p_kst 8.413333e-04   p_cons 3.621740e-01   p_joint 1.727333e-03

Joint ci ratio: 7.672266e-02	ci left: 1.659601e-03	ci right 1.792653e-03	k: 2605	n:1510000
Cons ci ratio: 4.233612e-03	ci left: 3.613843e-01	ci right 3.629182e-01	k: 546848	n:1510000
KS ci ratio: 1.098650e-01	ci left: 7.960954e-04	ci right 8.892799e-04	k: 1271	n:1510000
PACRG   1510000 perm   1235 sec   (1223 perm/sec)   p_kst 8.417219e-04   p_cons 3.621510e-01   p_joint 1.725166e-03

Joint ci ratio: 7.651748e-02	ci left: 1.657716e-03	ci right 1.790247e-03	k: 2619	n:1520000
Cons ci ratio: 4.219708e-03	ci left: 3.613819e-01	ci right 3.629107e-01	k: 550462	n:1520000
KS ci ratio: 1.096928e-01	ci left: 7.934172e-04	ci right 8.861333e-04	k: 1275	n:1520000
PACRG   1520000 perm   1250 sec   (1216 perm/sec)   p_kst 8.388158e-04   p_cons 3.621461e-01   p_joint 1.723026e-03

Joint ci ratio: 7.624149e-02	ci left: 1.659063e-03	ci right 1.791201e-03	k: 2638	n:1530000
Cons ci ratio: 4.205851e-03	ci left: 3.613894e-01	ci right 3.629131e-01	k: 554091	n:1530000
KS ci ratio: 1.093506e-01	ci left: 7.933170e-04	ci right 8.857135e-04	k: 1283	n:1530000
PACRG   1530000 perm   1264 sec   (1210 perm/sec)   p_kst 8.385621e-04   p_cons 3.621510e-01   p_joint 1.724183e-03

Joint ci ratio: 7.601144e-02	ci left: 1.658481e-03	ci right 1.790157e-03	k: 2654	n:1540000
Cons ci ratio: 4.192100e-03	ci left: 3.613999e-01	ci right 3.629188e-01	k: 557725	n:1540000
KS ci ratio: 1.090538e-01	ci left: 7.925869e-04	ci right 8.846317e-04	k: 1290	n:1540000
PACRG   1540000 perm   1279 sec   (1204 perm/sec)   p_kst 8.376623e-04   p_cons 3.621591e-01   p_joint 1.723377e-03

Joint ci ratio: 7.581190e-02	ci left: 1.656642e-03	ci right 1.787812e-03	k: 2668	n:1550000
Cons ci ratio: 4.178389e-03	ci left: 3.614207e-01	ci right 3.629346e-01	k: 561375	n:1550000
KS ci ratio: 1.087175e-01	ci left: 7.924942e-04	ci right 8.842262e-04	k: 1298	n:1550000
PACRG   1550000 perm   1294 sec   (1198 perm/sec)   p_kst 8.374194e-04   p_cons 3.621774e-01   p_joint 1.721290e-03

Joint ci ratio: 7.550126e-02	ci left: 1.659859e-03	ci right 1.790720e-03	k: 2690	n:1560000
Cons ci ratio: 4.164893e-03	ci left: 3.614323e-01	ci right 3.629413e-01	k: 565011	n:1560000
KS ci ratio: 1.082186e-01	ci left: 7.948978e-04	ci right 8.864589e-04	k: 1310	n:1560000
PACRG   1560000 perm   1308 sec   (1192 perm/sec)   p_kst 8.397436e-04   p_cons 3.621865e-01   p_joint 1.724359e-03

Joint ci ratio: 7.527783e-02	ci left: 1.659285e-03	ci right 1.789698e-03	k: 2706	n:1570000
Cons ci ratio: 4.151361e-03	ci left: 3.614621e-01	ci right 3.629664e-01	k: 568676	n:1570000
KS ci ratio: 1.079719e-01	ci left: 7.935530e-04	ci right 8.847376e-04	k: 1316	n:1570000
PACRG   1570000 perm   1323 sec   (1186 perm/sec)   p_kst 8.382166e-04   p_cons 3.622140e-01   p_joint 1.723567e-03

Joint ci ratio: 7.515320e-02	ci left: 1.654372e-03	ci right 1.784174e-03	k: 2715	n:1580000
Cons ci ratio: 4.137688e-03	ci left: 3.615220e-01	ci right 3.630216e-01	k: 572389	n:1580000
KS ci ratio: 1.078085e-01	ci left: 7.909938e-04	ci right 8.817380e-04	k: 1320	n:1580000
PACRG   1580000 perm   1338 sec   (1181 perm/sec)   p_kst 8.354430e-04   p_cons 3.622715e-01   p_joint 1.718354e-03

Joint ci ratio: 7.494657e-02	ci left: 1.653224e-03	ci right 1.782564e-03	k: 2730	n:1590000
Cons ci ratio: 4.124610e-03	ci left: 3.615296e-01	ci right 3.630244e-01	k: 576020	n:1590000
KS ci ratio: 1.075645e-01	ci left: 7.896909e-04	ci right 8.800677e-04	k: 1326	n:1590000
PACRG   1590000 perm   1353 sec   (1175 perm/sec)   p_kst 8.339623e-04   p_cons 3.622767e-01   p_joint 1.716981e-03

Joint ci ratio: 7.474165e-02	ci left: 1.652091e-03	ci right 1.780973e-03	k: 2745	n:1600000
Cons ci ratio: 4.111582e-03	ci left: 3.615452e-01	ci right 3.630353e-01	k: 579664	n:1600000
KS ci ratio: 1.072820e-01	ci left: 7.890128e-04	ci right 8.790598e-04	k: 1333	n:1600000
PACRG   1600000 perm   1368 sec   (1169 perm/sec)   p_kst 8.331250e-04   p_cons 3.622900e-01   p_joint 1.715625e-03

Joint ci ratio: 7.451136e-02	ci left: 1.652192e-03	ci right 1.780667e-03	k: 2762	n:1610000
Cons ci ratio: 4.098771e-03	ci left: 3.615500e-01	ci right 3.630356e-01	k: 583291	n:1610000
KS ci ratio: 1.068423e-01	ci left: 7.907615e-04	ci right 8.806150e-04	k: 1344	n:1610000
PACRG   1610000 perm   1384 sec   (1164 perm/sec)   p_kst 8.347826e-04   p_cons 3.622925e-01   p_joint 1.715528e-03

Joint ci ratio: 7.436363e-02	ci left: 1.648657e-03	ci right 1.776592e-03	k: 2773	n:1620000
Cons ci ratio: 4.086084e-03	ci left: 3.615542e-01	ci right 3.630352e-01	k: 586917	n:1620000
KS ci ratio: 1.067235e-01	ci left: 7.876826e-04	ci right 8.770804e-04	k: 1347	n:1620000
PACRG   1620000 perm   1399 sec   (1158 perm/sec)   p_kst 8.314815e-04   p_cons 3.622944e-01   p_joint 1.711728e-03

Joint ci ratio: 7.412351e-02	ci left: 1.649380e-03	ci right 1.776941e-03	k: 2791	n:1630000
Cons ci ratio: 4.073173e-03	ci left: 3.615970e-01	ci right 3.630734e-01	k: 590606	n:1630000
KS ci ratio: 1.064476e-01	ci left: 7.870301e-04	ci right 8.761085e-04	k: 1354	n:1630000
PACRG   1630000 perm   1415 sec   (1152 perm/sec)   p_kst 8.306748e-04   p_cons 3.623350e-01   p_joint 1.712270e-03

Joint ci ratio: 7.388570e-02	ci left: 1.650095e-03	ci right 1.777284e-03	k: 2809	n:1640000
Cons ci ratio: 4.060599e-03	ci left: 3.616149e-01	ci right 3.630868e-01	k: 594255	n:1640000
KS ci ratio: 1.062127e-01	ci left: 7.857924e-04	ci right 8.745222e-04	k: 1360	n:1640000
PACRG   1640000 perm   1430 sec   (1147 perm/sec)   p_kst 8.292683e-04   p_cons 3.623506e-01   p_joint 1.712805e-03

Joint ci ratio: 7.361107e-02	ci left: 1.652587e-03	ci right 1.779475e-03	k: 2830	n:1650000
Cons ci ratio: 4.048044e-03	ci left: 3.616435e-01	ci right 3.631110e-01	k: 597922	n:1650000
KS ci ratio: 1.059795e-01	ci left: 7.845698e-04	ci right 8.729549e-04	k: 1366	n:1650000
PACRG   1650000 perm   1445 sec   (1142 perm/sec)   p_kst 8.278788e-04   p_cons 3.623770e-01   p_joint 1.715152e-03

Joint ci ratio: 7.328801e-02	ci left: 1.657416e-03	ci right 1.784092e-03	k: 2855	n:1660000
Cons ci ratio: 4.036174e-03	ci left: 3.616067e-01	ci right 3.630697e-01	k: 601481	n:1660000
KS ci ratio: 1.055555e-01	ci left: 7.862948e-04	ci right 8.744979e-04	k: 1377	n:1660000
PACRG   1660000 perm   1461 sec   (1136 perm/sec)   p_kst 8.295181e-04   p_cons 3.623380e-01   p_joint 1.719880e-03

Joint ci ratio: 7.310911e-02	ci left: 1.655721e-03	ci right 1.781945e-03	k: 2869	n:1670000
Cons ci ratio: 4.024256e-03	ci left: 3.615877e-01	ci right 3.630463e-01	k: 605069	n:1670000
KS ci ratio: 1.052885e-01	ci left: 7.856675e-04	ci right 8.735635e-04	k: 1384	n:1670000
PACRG   1670000 perm   1477 sec   (1130 perm/sec)   p_kst 8.287425e-04   p_cons 3.623168e-01   p_joint 1.717964e-03

Joint ci ratio: 7.283040e-02	ci left: 1.658722e-03	ci right 1.784672e-03	k: 2891	n:1680000
Cons ci ratio: 4.012525e-03	ci left: 3.615594e-01	ci right 3.630137e-01	k: 608641	n:1680000
KS ci ratio: 1.048352e-01	ci left: 7.879461e-04	ci right 8.756941e-04	k: 1396	n:1680000
PACRG   1680000 perm   1493 sec   (1125 perm/sec)   p_kst 8.309524e-04   p_cons 3.622863e-01   p_joint 1.720833e-03

Joint ci ratio: 7.256732e-02	ci left: 1.661107e-03	ci right 1.786764e-03	k: 2912	n:1690000
Cons ci ratio: 4.000661e-03	ci left: 3.615587e-01	ci right 3.630086e-01	k: 612259	n:1690000
KS ci ratio: 1.045363e-01	ci left: 7.878935e-04	ci right 8.753701e-04	k: 1404	n:1690000
PACRG   1690000 perm   1509 sec   (1120 perm/sec)   p_kst 8.307692e-04   p_cons 3.622834e-01   p_joint 1.723077e-03

Joint ci ratio: 7.246808e-02	ci left: 1.655956e-03	ci right 1.781045e-03	k: 2920	n:1700000
Cons ci ratio: 3.988958e-03	ci left: 3.615515e-01	ci right 3.629972e-01	k: 615866	n:1700000
KS ci ratio: 1.044250e-01	ci left: 7.849774e-04	ci right 8.720317e-04	k: 1407	n:1700000
PACRG   1700000 perm   1524 sec   (1115 perm/sec)   p_kst 8.276471e-04   p_cons 3.622741e-01   p_joint 1.717647e-03

Joint ci ratio: 7.222119e-02	ci left: 1.657757e-03	ci right 1.782537e-03	k: 2940	n:1710000
Cons ci ratio: 3.977361e-03	ci left: 3.615439e-01	ci right 3.629853e-01	k: 619472	n:1710000
KS ci ratio: 1.039828e-01	ci left: 7.872216e-04	ci right 8.741325e-04	k: 1419	n:1710000
PACRG   1710000 perm   1541 sec   (1110 perm/sec)   p_kst 8.298246e-04   p_cons 3.622643e-01   p_joint 1.719298e-03

Joint ci ratio: 7.201336e-02	ci left: 1.657824e-03	ci right 1.782235e-03	k: 2957	n:1720000
Cons ci ratio: 3.965771e-03	ci left: 3.615473e-01	ci right 3.629845e-01	k: 623097	n:1720000
KS ci ratio: 1.036548e-01	ci left: 7.877414e-04	ci right 8.744187e-04	k: 1428	n:1720000
PACRG   1720000 perm   1557 sec   (1105 perm/sec)   p_kst 8.302326e-04   p_cons 3.622657e-01   p_joint 1.719186e-03

Joint ci ratio: 7.181941e-02	ci left: 1.657324e-03	ci right 1.781348e-03	k: 2973	n:1730000
Cons ci ratio: 3.953895e-03	ci left: 3.615958e-01	ci right 3.630289e-01	k: 626800	n:1730000
KS ci ratio: 1.034379e-01	ci left: 7.865663e-04	ci right 8.729222e-04	k: 1434	n:1730000
PACRG   1730000 perm   1573 sec   (1100 perm/sec)   p_kst 8.289017e-04   p_cons 3.623121e-01   p_joint 1.718497e-03

Joint ci ratio: 7.167506e-02	ci left: 1.654571e-03	ci right 1.778131e-03	k: 2985	n:1740000
Cons ci ratio: 3.942620e-03	ci left: 3.615857e-01	ci right 3.630147e-01	k: 630402	n:1740000
KS ci ratio: 1.031508e-01	ci left: 7.865248e-04	ci right 8.726219e-04	k: 1442	n:1740000
PACRG   1740000 perm   1590 sec   (1095 perm/sec)   p_kst 8.287356e-04   p_cons 3.623000e-01   p_joint 1.715517e-03

Joint ci ratio: 7.138860e-02	ci left: 1.658586e-03	ci right 1.781930e-03	k: 3009	n:1750000
Cons ci ratio: 3.931495e-03	ci left: 3.615695e-01	ci right 3.629944e-01	k: 633993	n:1750000
KS ci ratio: 1.026186e-01	ci left: 7.903813e-04	ci right 8.764273e-04	k: 1457	n:1750000
PACRG   1750000 perm   1606 sec   (1089 perm/sec)   p_kst 8.325714e-04   p_cons 3.622817e-01   p_joint 1.719429e-03

Joint ci ratio: 7.122322e-02	ci left: 1.656975e-03	ci right 1.779901e-03	k: 3023	n:1760000
Cons ci ratio: 3.920396e-03	ci left: 3.615614e-01	ci right 3.629822e-01	k: 637598	n:1760000
KS ci ratio: 1.023383e-01	ci left: 7.903194e-04	ci right 8.761095e-04	k: 1465	n:1760000
PACRG   1760000 perm   1623 sec   (1085 perm/sec)   p_kst 8.323864e-04   p_cons 3.622716e-01   p_joint 1.717614e-03

Joint ci ratio: 7.100049e-02	ci left: 1.658157e-03	ci right 1.780771e-03	k: 3042	n:1770000
Cons ci ratio: 3.909123e-03	ci left: 3.615851e-01	ci right 3.630018e-01	k: 641259	n:1770000
KS ci ratio: 1.020602e-01	ci left: 7.902586e-04	ci right 8.757950e-04	k: 1473	n:1770000
PACRG   1770000 perm   1639 sec   (1080 perm/sec)   p_kst 8.322034e-04   p_cons 3.622932e-01   p_joint 1.718644e-03

Joint ci ratio: 7.093082e-02	ci left: 1.652152e-03	ci right 1.774197e-03	k: 3048	n:1780000
Cons ci ratio: 3.897852e-03	ci left: 3.616197e-01	ci right 3.630325e-01	k: 644940	n:1780000
KS ci ratio: 1.018876e-01	ci left: 7.885563e-04	ci right 8.737554e-04	k: 1478	n:1780000
PACRG   1780000 perm   1656 sec   (1075 perm/sec)   p_kst 8.303371e-04   p_cons 3.623258e-01   p_joint 1.712360e-03

Joint ci ratio: 7.065315e-02	ci left: 1.656093e-03	ci right 1.777930e-03	k: 3072	n:1790000
Cons ci ratio: 3.886856e-03	ci left: 3.616327e-01	ci right 3.630415e-01	k: 648583	n:1790000
KS ci ratio: 1.014086e-01	ci left: 7.917734e-04	ci right 8.768940e-04	k: 1492	n:1790000
PACRG   1790000 perm   1673 sec   (1070 perm/sec)   p_kst 8.335196e-04   p_cons 3.623369e-01   p_joint 1.716201e-03

Joint ci ratio: 7.048139e-02	ci left: 1.655079e-03	ci right 1.776533e-03	k: 3087	n:1800000
Cons ci ratio: 3.876078e-03	ci left: 3.616305e-01	ci right 3.630355e-01	k: 652199	n:1800000
KS ci ratio: 1.012055e-01	ci left: 7.906235e-04	ci right 8.754402e-04	k: 1498	n:1800000
PACRG   1800000 perm   1690 sec   (1065 perm/sec)   p_kst 8.322222e-04   p_cons 3.623328e-01   p_joint 1.715000e-03

Joint ci ratio: 7.033358e-02	ci left: 1.652990e-03	ci right 1.774027e-03	k: 3100	n:1810000
Cons ci ratio: 3.865247e-03	ci left: 3.616455e-01	ci right 3.630466e-01	k: 655846	n:1810000
KS ci ratio: 1.009701e-01	ci left: 7.900250e-04	ci right 8.745687e-04	k: 1505	n:1810000
PACRG   1810000 perm   1707 sec   (1061 perm/sec)   p_kst 8.314917e-04   p_cons 3.623459e-01   p_joint 1.712707e-03

Joint ci ratio: 7.022059e-02	ci left: 1.649306e-03	ci right 1.769871e-03	k: 3110	n:1820000
Cons ci ratio: 3.854854e-03	ci left: 3.616187e-01	ci right 3.630159e-01	k: 659417	n:1820000
KS ci ratio: 1.008698e-01	ci left: 7.872909e-04	ci right 8.714534e-04	k: 1508	n:1820000
PACRG   1820000 perm   1724 sec   (1056 perm/sec)   p_kst 8.285714e-04   p_cons 3.623170e-01   p_joint 1.708791e-03

Joint ci ratio: 7.006317e-02	ci left: 1.647809e-03	ci right 1.767984e-03	k: 3124	n:1830000
Cons ci ratio: 3.844453e-03	ci left: 3.616030e-01	ci right 3.629964e-01	k: 663008	n:1830000
KS ci ratio: 1.006035e-01	ci left: 7.872502e-04	ci right 8.711730e-04	k: 1516	n:1830000
PACRG   1830000 perm   1741 sec   (1051 perm/sec)   p_kst 8.284153e-04   p_cons 3.622995e-01   p_joint 1.707104e-03

Joint ci ratio: 6.987338e-02	ci left: 1.647931e-03	ci right 1.767776e-03	k: 3141	n:1840000
Cons ci ratio: 3.833857e-03	ci left: 3.616212e-01	ci right 3.630108e-01	k: 666661	n:1840000
KS ci ratio: 1.003064e-01	ci left: 7.877401e-04	ci right 8.714525e-04	k: 1525	n:1840000
PACRG   1840000 perm   1758 sec   (1046 perm/sec)   p_kst 8.288043e-04   p_cons 3.623158e-01   p_joint 1.707065e-03

Joint ci ratio: 6.971828e-02	ci left: 1.646459e-03	ci right 1.765920e-03	k: 3155	n:1850000
Cons ci ratio: 3.823294e-03	ci left: 3.616457e-01	ci right 3.630315e-01	k: 670326	n:1850000
KS ci ratio: 1.001425e-01	ci left: 7.861170e-04	ci right 8.695124e-04	k: 1530	n:1850000
PACRG   1850000 perm   1775 sec   (1042 perm/sec)   p_kst 8.270270e-04   p_cons 3.623384e-01   p_joint 1.705405e-03

Joint ci ratio: 6.956422e-02	ci left: 1.645003e-03	ci right 1.764084e-03	k: 3169	n:1860000
Cons ci ratio: 3.812756e-03	ci left: 3.616774e-01	ci right 3.630596e-01	k: 674005	n:1860000
KS ci ratio: 9.981703e-02	ci left: 7.871325e-04	ci right 8.703483e-04	k: 1540	n:1860000
PACRG   1860000 perm   1793 sec   (1038 perm/sec)   p_kst 8.279570e-04   p_cons 3.623683e-01   p_joint 1.703763e-03

Outputting figure to mutsig2_images.part000000000125/PACRG.2_915_1860000_0.00082796_0.36237_0.0017038.png
                gene_name: PACRG
               theta_stop: 0.100 
                    nperm: 1860000 
                     p_ks: 0.00083 
        ci_ks_bounds_left: 0.00079 
       ci_ks_bounds_right: 0.00087 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.0017 
     ci_joint_bounds_left: 0.0016 
    ci_joint_bounds_right: 0.0018 

Current progress: 83 percent done.
PACS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.276191e-02	ci left: 5.789809e-01	ci right 5.983674e-01	k: 5887	n:10000
Cons ci ratio: 9.706602e-03	ci left: 9.375495e-01	ci right 9.467908e-01	k: 9423	n:10000
KS ci ratio: 1.148091e-01	ci left: 9.837525e-02	ci right 1.104563e-01	k: 1043	n:10000
PACS1   10000 perm   2 sec   (5521 perm/sec)   p_kst 1.043000e-01   p_cons 9.423000e-01   p_joint 5.887000e-01

Joint ci ratio: 1.393313e-02	ci left: 7.926706e-01	ci right 8.038425e-01	k: 15966	n:20000
Cons ci ratio: 6.933543e-03	ci left: 9.377987e-01	ci right 9.443723e-01	k: 18823	n:20000
KS ci ratio: 8.111878e-02	ci left: 1.002931e-01	ci right 1.088222e-01	k: 2090	n:20000
PACS1   20000 perm   4 sec   (4912 perm/sec)   p_kst 1.045000e-01   p_cons 9.411500e-01   p_joint 7.983000e-01

Outputting figure to mutsig2_images.part000000000125/PACS1.2_2988_20000_0.1045_0.94115_0.7983.png
                gene_name: PACS1
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 85 percent done.
PADI2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.117267e-01	ci left: 1.034441e-01	ci right 1.157844e-01	k: 1095	n:10000
Cons ci ratio: 3.192992e-02	ci left: 5.914243e-01	ci right 6.107168e-01	k: 6011	n:10000
KS ci ratio: 2.264156e-01	ci left: 2.579881e-02	ci right 3.247924e-02	k: 290	n:10000
PADI2   10000 perm   2 sec   (6028 perm/sec)   p_kst 2.900000e-02   p_cons 6.011000e-01   p_joint 1.095000e-01

Joint ci ratio: 3.196929e-02	ci left: 4.222262e-01	ci right 4.359944e-01	k: 8582	n:20000
Cons ci ratio: 2.244984e-02	ci left: 5.970319e-01	ci right 6.106379e-01	k: 12077	n:20000
KS ci ratio: 1.577464e-01	ci left: 2.758319e-02	ci right 3.235477e-02	k: 598	n:20000
PADI2   20000 perm   4 sec   (5327 perm/sec)   p_kst 2.990000e-02   p_cons 6.038500e-01   p_joint 4.291000e-01

Joint ci ratio: 1.026104e-02	ci left: 8.251959e-01	ci right 8.337402e-01	k: 24885	n:30000
Cons ci ratio: 1.828014e-02	ci left: 5.996087e-01	ci right 6.107043e-01	k: 18155	n:30000
KS ci ratio: 1.277417e-01	ci left: 2.848615e-02	ci right 3.240548e-02	k: 912	n:30000
PADI2   30000 perm   6 sec   (5049 perm/sec)   p_kst 3.040000e-02   p_cons 6.051667e-01   p_joint 8.295000e-01

Joint ci ratio: 6.809834e-03	ci left: 8.892210e-01	ci right 8.953219e-01	k: 35692	n:40000
Cons ci ratio: 1.577054e-02	ci left: 6.021935e-01	ci right 6.117910e-01	k: 24280	n:40000
KS ci ratio: 1.095346e-01	ci left: 2.932313e-02	ci right 3.274540e-02	k: 1240	n:40000
PADI2   40000 perm   8 sec   (4870 perm/sec)   p_kst 3.100000e-02   p_cons 6.070000e-01   p_joint 8.923000e-01

Joint ci ratio: 6.172260e-03	ci left: 8.869417e-01	ci right 8.924529e-01	k: 44486	n:50000
Cons ci ratio: 1.413644e-02	ci left: 6.016609e-01	ci right 6.102468e-01	k: 30298	n:50000
KS ci ratio: 9.837254e-02	ci left: 2.926383e-02	ci right 3.231097e-02	k: 1538	n:50000
PADI2   50000 perm   11 sec   (4732 perm/sec)   p_kst 3.076000e-02   p_cons 6.059600e-01   p_joint 8.897200e-01

Outputting figure to mutsig2_images.part000000000125/PADI2.2_2062_50000_0.03076_0.60596_0.88972.png
                gene_name: PADI2
               theta_stop: 0.098 
                    nperm: 50000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.89 

Current progress: 88 percent done.
PADI3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.528745e-02	ci left: 1.669102e-01	ci right 1.818800e-01	k: 1743	n:10000
Cons ci ratio: 5.234648e-02	ci left: 3.497889e-01	ci right 3.686932e-01	k: 3592	n:10000
KS ci ratio: 1.307207e-01	ci left: 7.708281e-02	ci right 8.796184e-02	k: 824	n:10000
PADI3   10000 perm   2 sec   (6046 perm/sec)   p_kst 8.240000e-02   p_cons 3.592000e-01   p_joint 1.743000e-01

Joint ci ratio: 3.957636e-02	ci left: 3.225383e-01	ci right 3.356114e-01	k: 6581	n:20000
Cons ci ratio: 3.575802e-02	ci left: 3.685830e-01	ci right 3.820533e-01	k: 7506	n:20000
KS ci ratio: 9.345775e-02	ci left: 7.705916e-02	ci right 8.466322e-02	k: 1616	n:20000
PADI3   20000 perm   4 sec   (5304 perm/sec)   p_kst 8.080000e-02   p_cons 3.753000e-01   p_joint 3.290500e-01

Outputting figure to mutsig2_images.part000000000125/PADI3.2_2059_20000_0.0808_0.3753_0.32905.png
                gene_name: PADI3
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.081 
        ci_ks_bounds_left: 0.077 
       ci_ks_bounds_right: 0.085 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 90 percent done.
PADI6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.224372e-02	ci left: 5.867071e-01	ci right 6.060367e-01	k: 5964	n:10000
Cons ci ratio: 3.306720e-02	ci left: 5.744668e-01	ci right 5.938842e-01	k: 5842	n:10000
KS ci ratio: 6.108332e-02	ci left: 2.827037e-01	ci right 3.006178e-01	k: 2916	n:10000
PADI6   10000 perm   2 sec   (6257 perm/sec)   p_kst 2.916000e-01   p_cons 5.842000e-01   p_joint 5.964000e-01

Outputting figure to mutsig2_images.part000000000125/PADI6.2_2150_10000_0.2916_0.5842_0.5964.png
                gene_name: PADI6
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 92 percent done.
PAIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.345856e-02	ci left: 7.275456e-01	ci right 7.449166e-01	k: 7363	n:10000
Cons ci ratio: 4.249072e-02	ci left: 4.498950e-01	ci right 4.695285e-01	k: 4597	n:10000
KS ci ratio: 5.697292e-02	ci left: 3.120513e-01	ci right 3.304529e-01	k: 3212	n:10000
PAIP1   10000 perm   2 sec   (6417 perm/sec)   p_kst 3.212000e-01   p_cons 4.597000e-01   p_joint 7.363000e-01

Outputting figure to mutsig2_images.part000000000125/PAIP1.2_1484_10000_0.3212_0.4597_0.7363.png
                gene_name: PAIP1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.74 

Current progress: 94 percent done.
PAK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.688723e-02	ci left: 1.983069e-01	ci right 2.142646e-01	k: 2062	n:10000
Cons ci ratio: 9.491770e-02	ci left: 1.387411e-01	ci right 1.526660e-01	k: 1456	n:10000
KS ci ratio: 1.317184e-02	ci left: 8.925171e-01	ci right 9.044496e-01	k: 8986	n:10000
PAK1   10000 perm   2 sec   (6122 perm/sec)   p_kst 8.986000e-01   p_cons 1.456000e-01   p_joint 2.062000e-01

Outputting figure to mutsig2_images.part000000000125/PAK1.2_1747_10000_0.8986_0.1456_0.2062.png
                gene_name: PAK1
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 96 percent done.
PALMD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.698187e-02	ci left: 6.692450e-01	ci right 6.876510e-01	k: 6785	n:10000
KS ci ratio: 5.487243e-02	ci left: 3.285285e-01	ci right 3.471661e-01	k: 3378	n:10000
PALMD   10000 perm   2 sec   (6226 perm/sec)   p_kst 3.378000e-01   p_cons 6.785000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000125/PALMD.2_1688_10000_0.3378_0.6785_1.png
                gene_name: PALMD
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
PAPD5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.208251e-02	ci left: 4.546864e-01	ci right 4.743342e-01	k: 4645	n:10000
Cons ci ratio: 1.585788e-02	ci left: 8.524324e-01	ci right 8.661576e-01	k: 8594	n:10000
KS ci ratio: 8.859915e-02	ci left: 1.563986e-01	ci right 1.709979e-01	k: 1636	n:10000
PAPD5   10000 perm   2 sec   (6305 perm/sec)   p_kst 1.636000e-01   p_cons 8.594000e-01   p_joint 4.645000e-01

Outputting figure to mutsig2_images.part000000000125/PAPD5.2_2149_10000_0.1636_0.8594_0.4645.png
                gene_name: PAPD5
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000125
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 125 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1708>
Subject: Job 8004360: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1708>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000126> was used as the working directory.
Started at Sun Nov 11 15:11:24 2012
Results reported at Sun Nov 11 15:24:02 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000126.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000126.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 126  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000126.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    810.11 sec.
    Max Memory :      4758 MB
    Max Swap   :      7140 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
126
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 126
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 126: processing genes 11310 - 11399
Calculating significance of each gene.
Using projection method.
11310	PAPSS1	1
11311	PAPSS2	9.140773e-01
11312	PAQR3	1
11313	PAQR4	4.322226e-01
11314	PAQR5	4.126248e-01
11315	PAQR6	1
11316	PAQR7	1
11317	PAQR8	4.530985e-01
11318	PAQR9	6.521592e-02
11319	PARD3	3.225852e-01
11320	PARD3B	9.749441e-03
11321	PARD6A	5.332650e-01
11322	PARD6B	1
11323	PARD6G	3.959082e-01
11324	PARK2	2.457602e-05
11325	PARK7	3.176979e-01
11326	PARL	2.508353e-01
11327	PARM1	4.312766e-01
11328	PARN	7.960165e-01
11329	PARP1	9.738966e-01
11330	PARP10	9.574700e-01
11331	PARP11	2.502773e-01
11332	PARP12	1
11333	PARP14	9.984840e-01
11334	PARP15	1
11335	PARP16	7.236034e-01
11336	PARP2	6.639587e-01
11337	PARP3	1
11338	PARP4	9.986007e-01
11339	PARP6	2.049993e-01
11340	PARP8	2.429793e-01
11341	PARP9	4.551816e-01
11342	PARS2	1.746345e-01
11343	PARVA	1
11344	PARVB	6.788012e-01
11345	PARVG	2.820662e-01
11346	PASD1	1
11347	PASK	6.014263e-01
11348	PATE1	4.733578e-02
11349	PATE2	1
11350	PATL1	1
11351	PATZ1	9.120157e-01
11352	PAWR	1
11353	PAX1	1
11354	PAX2	3.773058e-01
11355	PAX3	1
11356	PAX4	1
11357	PAX5	1.117329e-01
11358	PAX6	1
11359	PAX7	4.567824e-01
11360	PAX8	1.035327e-01
11361	PAX9	2.193268e-01
11362	PAXIP1	1
11363	PBK	1
11364	PBLD	2.789548e-01
11365	PBOV1	1
11366	PBRM1	5.246929e-01
11367	PBX1	3.804034e-03
11368	PBX2	4.990528e-02
11369	PBX3	6.069415e-01
11370	PBX4	1
11371	PBXIP1	9.366990e-01
11372	PC	9.871518e-01
11373	PCBD1	1
11374	PCBD2	1
11375	PCBP1	1
11376	PCBP2	5.964722e-01
11377	PCBP3	6.970580e-01
11378	PCBP4	1
11379	PCCA	5.187702e-01
11380	PCCB	1.371114e-02
11381	PCDH1	9.201895e-01
11382	PCDH10	1
11383	PCDH11X	1.281770e-03
11384	PCDH11Y	3.795516e-01
11385	PCDH12	1
11386	PCDH15	1
11387	PCDH17	2.497868e-01
11388	PCDH18	7.422755e-01
11389	PCDH19	1
11390	PCDH20	1.889899e-01
11391	PCDH7	4.997967e-03
11392	PCDH8	1.080223e-01
11393	PCDH9	1
11394	PCDHA1	9.807398e-01
11395	PCDHA10	1
11396	PCDHA11	5.338528e-01
11397	PCDHA12	6.386693e-01
11398	PCDHA13	3.084686e-01
11399	PCDHA2	8.449659e-01
Done

Running MutSig 2:
Scatter job 126: processing genes 11310 - 11399
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
PCDH15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.432516e-02	ci left: 3.329974e-01	ci right 3.516945e-01	k: 3423	n:10000
Cons ci ratio: 1.594303e-02	ci left: 8.511065e-01	ci right 8.648842e-01	k: 8581	n:10000
KS ci ratio: 8.069985e-02	ci left: 1.831396e-01	ci right 1.986409e-01	k: 1908	n:10000
PCDH15   10000 perm   3 sec   (3011 perm/sec)   p_kst 1.908000e-01   p_cons 8.581000e-01   p_joint 3.423000e-01

Outputting figure to mutsig2_images.part000000000126/PCDH15.39_7659_10000_0.1908_0.8581_0.3423.png
                gene_name: PCDH15
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 2 percent done.
PCDH11X
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.578935e-02	ci left: 6.887938e-01	ci right 7.068908e-01	k: 6979	n:10000
Cons ci ratio: 1.757229e-02	ci left: 8.252379e-01	ci right 8.399678e-01	k: 8327	n:10000
KS ci ratio: 3.518897e-02	ci left: 5.438924e-01	ci right 5.634763e-01	k: 5537	n:10000
PCDH11X   10000 perm   3 sec   (3967 perm/sec)   p_kst 5.537000e-01   p_cons 8.327000e-01   p_joint 6.979000e-01

Outputting figure to mutsig2_images.part000000000126/PCDH11X.33_4194_10000_0.5537_0.8327_0.6979.png
                gene_name: PCDH11X
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 4 percent done.
PCDH10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.793042e-02	ci left: 8.194416e-01	ci right 8.343675e-01	k: 8270	n:10000
Cons ci ratio: 2.916815e-02	ci left: 6.341223e-01	ci right 6.529940e-01	k: 6436	n:10000
KS ci ratio: 3.263356e-02	ci left: 5.808872e-01	ci right 6.002600e-01	k: 5906	n:10000
PCDH10   10000 perm   2 sec   (4712 perm/sec)   p_kst 5.906000e-01   p_cons 6.436000e-01   p_joint 8.270000e-01

Outputting figure to mutsig2_images.part000000000126/PCDH10.17_3203_10000_0.5906_0.6436_0.827.png
                gene_name: PCDH10
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 5 percent done.
PCDH17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.883601e-03	ci left: 9.354766e-01	ci right 9.448650e-01	k: 9403	n:10000
KS ci ratio: 1.840456e-02	ci left: 8.117176e-01	ci right 8.268959e-01	k: 8194	n:10000
PCDH17   10000 perm   2 sec   (4710 perm/sec)   p_kst 8.194000e-01   p_cons 9.403000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000126/PCDH17.15_3496_10000_0.8194_0.9403_1.png
                gene_name: PCDH17
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 7 percent done.
PCDH7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.784099e-02	ci left: 2.417346e-01	ci right 2.588111e-01	k: 2502	n:10000
Cons ci ratio: 1.368725e-01	ci left: 7.058968e-02	ci right 8.105902e-02	k: 757	n:10000
KS ci ratio: 4.980742e-02	ci left: 3.728605e-01	ci right 3.920080e-01	k: 3824	n:10000
PCDH7   10000 perm   2 sec   (4356 perm/sec)   p_kst 3.824000e-01   p_cons 7.570000e-02   p_joint 2.502000e-01

Joint ci ratio: 5.575025e-02	ci left: 1.926449e-01	ci right 2.037430e-01	k: 3963	n:20000
Cons ci ratio: 8.951065e-02	ci left: 8.357009e-02	ci right 9.145032e-02	k: 1749	n:20000
KS ci ratio: 3.511481e-02	ci left: 3.771023e-01	ci right 3.906314e-01	k: 7677	n:20000
PCDH7   20000 perm   5 sec   (3965 perm/sec)   p_kst 3.838500e-01   p_cons 8.745000e-02   p_joint 1.981500e-01

Outputting figure to mutsig2_images.part000000000126/PCDH7.12_3865_20000_0.38385_0.08745_0.19815.png
                gene_name: PCDH7
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.087 
      ci_cons_bounds_left: 0.084 
     ci_cons_bounds_right: 0.091 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 9 percent done.
PARD3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.648733e-01	ci left: 4.907401e-02	ci right 5.798834e-02	k: 534	n:10000
Cons ci ratio: 2.911757e-01	ci left: 1.520682e-02	ci right 2.047941e-02	k: 177	n:10000
KS ci ratio: 7.705195e-02	ci left: 1.976171e-01	ci right 2.135548e-01	k: 2055	n:10000
PARD3B   10000 perm   2 sec   (4539 perm/sec)   p_kst 2.055000e-01   p_cons 1.770000e-02   p_joint 5.340000e-02

Joint ci ratio: 9.606744e-02	ci left: 7.314641e-02	ci right 8.057716e-02	k: 1536	n:20000
Cons ci ratio: 2.130137e-01	ci left: 1.487481e-02	ci right 1.846769e-02	k: 332	n:20000
KS ci ratio: 5.527244e-02	ci left: 1.953658e-01	ci right 2.065212e-01	k: 4018	n:20000
PARD3B   20000 perm   5 sec   (4158 perm/sec)   p_kst 2.009000e-01   p_cons 1.660000e-02   p_joint 7.680000e-02

Joint ci ratio: 8.449954e-02	ci left: 6.409812e-02	ci right 6.978610e-02	k: 2007	n:30000
Cons ci ratio: 1.700718e-01	ci left: 1.591865e-02	ci right 1.890919e-02	k: 521	n:30000
KS ci ratio: 4.532527e-02	ci left: 1.950235e-01	ci right 2.041014e-01	k: 5986	n:30000
PARD3B   30000 perm   7 sec   (4014 perm/sec)   p_kst 1.995333e-01   p_cons 1.736667e-02   p_joint 6.690000e-02

Joint ci ratio: 8.951312e-02	ci left: 4.369847e-02	ci right 4.781779e-02	k: 1829	n:40000
Cons ci ratio: 1.503958e-01	ci left: 1.544281e-02	ci right 1.797805e-02	k: 667	n:40000
KS ci ratio: 3.862128e-02	ci left: 2.008294e-01	ci right 2.087635e-01	k: 8191	n:40000
PARD3B   40000 perm   10 sec   (3916 perm/sec)   p_kst 2.047750e-01   p_cons 1.667500e-02   p_joint 4.572500e-02

Joint ci ratio: 8.856898e-02	ci left: 3.602780e-02	ci right 3.938614e-02	k: 1884	n:50000
Cons ci ratio: 1.315840e-01	ci left: 1.629133e-02	ci right 1.860519e-02	k: 871	n:50000
KS ci ratio: 3.436469e-02	ci left: 2.029391e-01	ci right 2.100550e-01	k: 10324	n:50000
PARD3B   50000 perm   13 sec   (3844 perm/sec)   p_kst 2.064800e-01   p_cons 1.742000e-02   p_joint 3.768000e-02

Joint ci ratio: 9.357514e-02	ci left: 2.708536e-02	ci right 2.976051e-02	k: 1704	n:60000
Cons ci ratio: 1.263726e-01	ci left: 1.478505e-02	ci right 1.679552e-02	k: 946	n:60000
KS ci ratio: 3.136896e-02	ci left: 2.032670e-01	ci right 2.097615e-01	k: 12390	n:60000
PARD3B   60000 perm   16 sec   (3781 perm/sec)   p_kst 2.065000e-01   p_cons 1.576667e-02   p_joint 2.840000e-02

Joint ci ratio: 6.705919e-02	ci left: 4.497994e-02	ci right 4.811493e-02	k: 3257	n:70000
Cons ci ratio: 1.174221e-01	ci left: 1.475046e-02	ci right 1.660429e-02	k: 1096	n:70000
KS ci ratio: 2.893883e-02	ci left: 2.046715e-01	ci right 2.106956e-01	k: 14537	n:70000
PARD3B   70000 perm   19 sec   (3722 perm/sec)   p_kst 2.076714e-01   p_cons 1.565714e-02   p_joint 4.652857e-02

Joint ci ratio: 6.906207e-02	ci left: 3.737394e-02	ci right 4.005964e-02	k: 3096	n:80000
Cons ci ratio: 1.095156e-01	ci left: 1.489857e-02	ci right 1.663680e-02	k: 1260	n:80000
KS ci ratio: 2.707995e-02	ci left: 2.047441e-01	ci right 2.103771e-01	k: 16604	n:80000
PARD3B   80000 perm   22 sec   (3669 perm/sec)   p_kst 2.075500e-01   p_cons 1.575000e-02   p_joint 3.870000e-02

Joint ci ratio: 6.452820e-02	ci left: 3.811643e-02	ci right 4.066892e-02	k: 3544	n:90000
Cons ci ratio: 1.031278e-01	ci left: 1.498455e-02	ci right 1.662465e-02	k: 1421	n:90000
KS ci ratio: 2.553004e-02	ci left: 2.049209e-01	ci right 2.102313e-01	k: 18681	n:90000
PARD3B   90000 perm   25 sec   (3616 perm/sec)   p_kst 2.075667e-01   p_cons 1.578889e-02   p_joint 3.937778e-02

Joint ci ratio: 6.351748e-02	ci left: 3.552339e-02	ci right 3.786358e-02	k: 3668	n:100000
Cons ci ratio: 9.837475e-02	ci left: 1.486053e-02	ci right 1.640775e-02	k: 1562	n:100000
KS ci ratio: 2.427734e-02	ci left: 2.042833e-01	ci right 2.093137e-01	k: 20679	n:100000
PARD3B   100000 perm   28 sec   (3568 perm/sec)   p_kst 2.067900e-01   p_cons 1.562000e-02   p_joint 3.668000e-02

Outputting figure to mutsig2_images.part000000000126/PARD3B.11_3710_100000_0.20679_0.01562_0.03668.png
                gene_name: PARD3B
               theta_stop: 0.098 
                    nperm: 100000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.016 
      ci_cons_bounds_left: 0.015 
     ci_cons_bounds_right: 0.016 
                  p_joint: 0.037 
     ci_joint_bounds_left: 0.036 
    ci_joint_bounds_right: 0.038 

Current progress: 11 percent done.
PARK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.141010e-02	ci left: 2.805242e-01	ci right 2.983986e-01	k: 2894	n:10000
Cons ci ratio: 3.520321e-02	ci left: 5.436920e-01	ci right 5.632768e-01	k: 5535	n:10000
KS ci ratio: 1.286084e-01	ci left: 7.950840e-02	ci right 9.053475e-02	k: 849	n:10000
PARK2   10000 perm   2 sec   (5248 perm/sec)   p_kst 8.490000e-02   p_cons 5.535000e-01   p_joint 2.894000e-01

Joint ci ratio: 5.773796e-02	ci left: 1.818642e-01	ci right 1.927269e-01	k: 3745	n:20000
Cons ci ratio: 2.474581e-02	ci left: 5.495320e-01	ci right 5.633516e-01	k: 11129	n:20000
KS ci ratio: 8.953869e-02	ci left: 8.352110e-02	ci right 9.139931e-02	k: 1748	n:20000
PARK2   20000 perm   4 sec   (4766 perm/sec)   p_kst 8.740000e-02   p_cons 5.564500e-01   p_joint 1.872500e-01

Outputting figure to mutsig2_images.part000000000126/PARK2.10_1446_20000_0.0874_0.55645_0.18725.png
                gene_name: PARK2
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.087 
        ci_ks_bounds_left: 0.084 
       ci_ks_bounds_right: 0.091 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 12 percent done.
PCDH20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.307051e-02	ci left: 8.939531e-01	ci right 9.058128e-01	k: 9000	n:10000
Cons ci ratio: 1.737651e-02	ci left: 8.283916e-01	ci right 8.430123e-01	k: 8358	n:10000
KS ci ratio: 1.820536e-02	ci left: 8.149692e-01	ci right 8.300424e-01	k: 8226	n:10000
PCDH20   10000 perm   2 sec   (5212 perm/sec)   p_kst 8.226000e-01   p_cons 8.358000e-01   p_joint 9.000000e-01

Outputting figure to mutsig2_images.part000000000126/PCDH20.9_2864_10000_0.8226_0.8358_0.9.png
                gene_name: PCDH20
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.91 

Current progress: 14 percent done.
PCDHA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.814227e-01	ci left: 4.054168e-02	ci right 4.872625e-02	k: 445	n:10000
Cons ci ratio: 2.981969e-02	ci left: 6.238676e-01	ci right 6.428546e-01	k: 6334	n:10000
KS ci ratio: 4.635411e-01	ci left: 5.460790e-03	ci right 8.835916e-03	k: 70	n:10000
PCDHA1   10000 perm   2 sec   (4973 perm/sec)   p_kst 7.000000e-03   p_cons 6.334000e-01   p_joint 4.450000e-02

Joint ci ratio: 1.307624e-01	ci left: 4.018178e-02	ci right 4.585205e-02	k: 859	n:20000
Cons ci ratio: 2.116620e-02	ci left: 6.249212e-01	ci right 6.383405e-01	k: 12633	n:20000
KS ci ratio: 3.440134e-01	ci left: 5.342070e-03	ci right 7.605013e-03	k: 128	n:20000
PCDHA1   20000 perm   4 sec   (4541 perm/sec)   p_kst 6.400000e-03   p_cons 6.316500e-01   p_joint 4.295000e-02

Joint ci ratio: 1.191894e-01	ci left: 3.272222e-02	ci right 3.690183e-02	k: 1043	n:30000
Cons ci ratio: 1.733009e-02	ci left: 6.248754e-01	ci right 6.358327e-01	k: 18911	n:30000
KS ci ratio: 2.783654e-01	ci left: 5.653057e-03	ci right 7.511107e-03	k: 196	n:30000
PCDHA1   30000 perm   7 sec   (4363 perm/sec)   p_kst 6.533333e-03   p_cons 6.303667e-01   p_joint 3.476667e-02

Joint ci ratio: 1.307559e-01	ci left: 2.053641e-02	ci right 2.343356e-02	k: 878	n:40000
Cons ci ratio: 1.501298e-02	ci left: 6.254724e-01	ci right 6.349587e-01	k: 25209	n:40000
KS ci ratio: 2.381987e-01	ci left: 5.924020e-03	ci right 7.548834e-03	k: 268	n:40000
PCDHA1   40000 perm   9 sec   (4249 perm/sec)   p_kst 6.700000e-03   p_cons 6.302250e-01   p_joint 2.195000e-02

Joint ci ratio: 1.310497e-01	ci left: 1.642680e-02	ci right 1.874969e-02	k: 878	n:50000
Cons ci ratio: 1.343975e-02	ci left: 6.255702e-01	ci right 6.340547e-01	k: 31491	n:50000
KS ci ratio: 2.180875e-01	ci left: 5.719809e-03	ci right 7.138410e-03	k: 320	n:50000
PCDHA1   50000 perm   12 sec   (4156 perm/sec)   p_kst 6.400000e-03   p_cons 6.298200e-01   p_joint 1.756000e-02

Joint ci ratio: 1.032345e-01	ci left: 2.225391e-02	ci right 2.469249e-02	k: 1407	n:60000
Cons ci ratio: 1.191910e-02	ci left: 6.393516e-01	ci right 6.470345e-01	k: 38592	n:60000
KS ci ratio: 2.007183e-01	ci left: 5.682544e-03	ci right 6.965912e-03	k: 378	n:60000
PCDHA1   60000 perm   15 sec   (4068 perm/sec)   p_kst 6.300000e-03   p_cons 6.432000e-01   p_joint 2.345000e-02

Joint ci ratio: 9.070880e-02	ci left: 2.480573e-02	ci right 2.717664e-02	k: 1818	n:70000
Cons ci ratio: 1.101952e-02	ci left: 6.402824e-01	ci right 6.473914e-01	k: 45069	n:70000
KS ci ratio: 1.837837e-01	ci left: 5.863547e-03	ci right 7.063629e-03	k: 451	n:70000
PCDHA1   70000 perm   18 sec   (3990 perm/sec)   p_kst 6.442857e-03   p_cons 6.438429e-01   p_joint 2.597143e-02

Joint ci ratio: 1.023303e-01	ci left: 1.708997e-02	ci right 1.894522e-02	k: 1440	n:80000
Cons ci ratio: 1.044573e-02	ci left: 6.343831e-01	ci right 6.410569e-01	k: 51018	n:80000
KS ci ratio: 1.818464e-01	ci left: 5.249728e-03	ci right 6.311595e-03	k: 461	n:80000
PCDHA1   80000 perm   20 sec   (3921 perm/sec)   p_kst 5.762500e-03   p_cons 6.377250e-01   p_joint 1.800000e-02

Joint ci ratio: 1.174673e-01	ci left: 1.150379e-02	ci right 1.295013e-02	k: 1099	n:90000
Cons ci ratio: 9.716880e-03	ci left: 6.407726e-01	ci right 6.470404e-01	k: 57952	n:90000
KS ci ratio: 1.712396e-01	ci left: 5.293042e-03	ci right 6.294771e-03	k: 520	n:90000
PCDHA1   90000 perm   23 sec   (3856 perm/sec)   p_kst 5.777778e-03   p_cons 6.439111e-01   p_joint 1.221111e-02

Joint ci ratio: 9.708911e-02	ci left: 1.526066e-02	ci right 1.682760e-02	k: 1603	n:100000
Cons ci ratio: 9.212445e-03	ci left: 6.412236e-01	ci right 6.471681e-01	k: 64420	n:100000
KS ci ratio: 1.617356e-01	ci left: 5.367520e-03	ci right 6.321485e-03	k: 583	n:100000
PCDHA1   100000 perm   26 sec   (3780 perm/sec)   p_kst 5.830000e-03   p_cons 6.442000e-01   p_joint 1.603000e-02

Joint ci ratio: 9.971538e-02	ci left: 1.316323e-02	ci right 1.455349e-02	k: 1523	n:110000
Cons ci ratio: 8.780942e-03	ci left: 6.415082e-01	ci right 6.471751e-01	k: 70878	n:110000
KS ci ratio: 1.547429e-01	ci left: 5.351035e-03	ci right 6.257137e-03	k: 637	n:110000
PCDHA1   110000 perm   30 sec   (3716 perm/sec)   p_kst 5.790909e-03   p_cons 6.443455e-01   p_joint 1.384545e-02

Joint ci ratio: 9.625246e-02	ci left: 1.297669e-02	ci right 1.429697e-02	k: 1635	n:120000
Cons ci ratio: 8.406269e-03	ci left: 6.416756e-01	ci right 6.471008e-01	k: 77327	n:120000
KS ci ratio: 1.477287e-01	ci left: 5.402248e-03	ci right 6.271895e-03	k: 699	n:120000
PCDHA1   120000 perm   33 sec   (3654 perm/sec)   p_kst 5.825000e-03   p_cons 6.443917e-01   p_joint 1.362500e-02

Joint ci ratio: 8.833212e-02	ci left: 1.426346e-02	ci right 1.558908e-02	k: 1939	n:130000
Cons ci ratio: 8.073223e-03	ci left: 6.419680e-01	ci right 6.471794e-01	k: 83795	n:130000
KS ci ratio: 1.406638e-01	ci left: 5.520586e-03	ci right 6.363220e-03	k: 771	n:130000
PCDHA1   130000 perm   36 sec   (3587 perm/sec)   p_kst 5.930769e-03   p_cons 6.445769e-01   p_joint 1.491538e-02

Joint ci ratio: 8.780796e-02	ci left: 1.341902e-02	ci right 1.465837e-02	k: 1964	n:140000
Cons ci ratio: 7.768859e-03	ci left: 6.426944e-01	ci right 6.477139e-01	k: 90329	n:140000
KS ci ratio: 1.359081e-01	ci left: 5.505523e-03	ci right 6.315147e-03	k: 826	n:140000
PCDHA1   140000 perm   40 sec   (3543 perm/sec)   p_kst 5.900000e-03   p_cons 6.452071e-01   p_joint 1.402857e-02

Joint ci ratio: 8.201844e-02	ci left: 1.438439e-02	ci right 1.562112e-02	k: 2249	n:150000
Cons ci ratio: 7.864722e-03	ci left: 6.210624e-01	ci right 6.259728e-01	k: 93528	n:150000
KS ci ratio: 1.304195e-01	ci left: 5.596073e-03	ci right 6.383206e-03	k: 897	n:150000
PCDHA1   150000 perm   43 sec   (3500 perm/sec)   p_kst 5.980000e-03   p_cons 6.235200e-01   p_joint 1.499333e-02

Joint ci ratio: 7.958252e-02	ci left: 1.434268e-02	ci right 1.553749e-02	k: 2389	n:160000
Cons ci ratio: 7.146110e-03	ci left: 6.505177e-01	ci right 6.551892e-01	k: 104457	n:160000
KS ci ratio: 1.254161e-01	ci left: 5.687989e-03	ci right 6.455075e-03	k: 970	n:160000
PCDHA1   160000 perm   46 sec   (3459 perm/sec)   p_kst 6.062500e-03   p_cons 6.528563e-01   p_joint 1.493125e-02

Joint ci ratio: 7.196711e-02	ci left: 1.653525e-02	ci right 1.777541e-02	k: 2915	n:170000
Cons ci ratio: 6.936847e-03	ci left: 6.503193e-01	ci right 6.548520e-01	k: 110940	n:170000
KS ci ratio: 1.218313e-01	ci left: 5.684027e-03	ci right 6.427088e-03	k: 1028	n:170000
PCDHA1   170000 perm   50 sec   (3419 perm/sec)   p_kst 6.047059e-03   p_cons 6.525882e-01   p_joint 1.714706e-02

Joint ci ratio: 7.015396e-02	ci left: 1.645150e-02	ci right 1.765302e-02	k: 3068	n:180000
Cons ci ratio: 6.739249e-03	ci left: 6.505287e-01	ci right 6.549331e-01	k: 117492	n:180000
KS ci ratio: 1.181008e-01	ci left: 5.723919e-03	ci right 6.447683e-03	k: 1094	n:180000
PCDHA1   180000 perm   53 sec   (3380 perm/sec)   p_kst 6.077778e-03   p_cons 6.527333e-01   p_joint 1.704444e-02

Joint ci ratio: 7.149968e-02	ci left: 1.501653e-02	ci right 1.613516e-02	k: 2958	n:190000
Cons ci ratio: 6.558768e-03	ci left: 6.506386e-01	ci right 6.549252e-01	k: 124029	n:190000
KS ci ratio: 1.147928e-01	ci left: 5.749696e-03	ci right 6.454975e-03	k: 1158	n:190000
PCDHA1   190000 perm   57 sec   (3342 perm/sec)   p_kst 6.094737e-03   p_cons 6.527842e-01   p_joint 1.556842e-02

Joint ci ratio: 7.184903e-02	ci left: 1.413781e-02	ci right 1.519633e-02	k: 2932	n:200000
Cons ci ratio: 6.388880e-03	ci left: 6.509642e-01	ci right 6.551414e-01	k: 130611	n:200000
KS ci ratio: 1.122105e-01	ci left: 5.724541e-03	ci right 6.409894e-03	k: 1212	n:200000
PCDHA1   200000 perm   61 sec   (3304 perm/sec)   p_kst 6.060000e-03   p_cons 6.530550e-01   p_joint 1.466000e-02

Joint ci ratio: 7.094798e-02	ci left: 1.381994e-02	ci right 1.484115e-02	k: 3008	n:210000
Cons ci ratio: 6.241105e-03	ci left: 6.505638e-01	ci right 6.546415e-01	k: 137047	n:210000
KS ci ratio: 1.096645e-01	ci left: 5.715840e-03	ci right 6.383620e-03	k: 1269	n:210000
PCDHA1   210000 perm   64 sec   (3267 perm/sec)   p_kst 6.042857e-03   p_cons 6.526048e-01   p_joint 1.432381e-02

Joint ci ratio: 6.590318e-02	ci left: 1.530539e-02	ci right 1.635288e-02	k: 3481	n:220000
Cons ci ratio: 6.096150e-03	ci left: 6.507199e-01	ci right 6.547034e-01	k: 143597	n:220000
KS ci ratio: 1.066393e-01	ci left: 5.778882e-03	ci right 6.434234e-03	k: 1342	n:220000
PCDHA1   220000 perm   68 sec   (3232 perm/sec)   p_kst 6.100000e-03   p_cons 6.527136e-01   p_joint 1.582273e-02

Joint ci ratio: 6.716093e-02	ci left: 1.410521e-02	ci right 1.508969e-02	k: 3356	n:230000
Cons ci ratio: 5.964276e-03	ci left: 6.506021e-01	ci right 6.544984e-01	k: 150087	n:230000
KS ci ratio: 1.044093e-01	ci left: 5.773143e-03	ci right 6.413313e-03	k: 1400	n:230000
PCDHA1   230000 perm   72 sec   (3195 perm/sec)   p_kst 6.086957e-03   p_cons 6.525522e-01   p_joint 1.459130e-02

Joint ci ratio: 6.780922e-02	ci left: 1.326742e-02	ci right 1.420271e-02	k: 3295	n:240000
Cons ci ratio: 5.839801e-03	ci left: 6.505576e-01	ci right 6.543720e-01	k: 156592	n:240000
KS ci ratio: 1.025259e-01	ci left: 5.743651e-03	ci right 6.368369e-03	k: 1452	n:240000
PCDHA1   240000 perm   76 sec   (3159 perm/sec)   p_kst 6.050000e-03   p_cons 6.524667e-01   p_joint 1.372917e-02

Joint ci ratio: 6.750713e-02	ci left: 1.285853e-02	ci right 1.376081e-02	k: 3326	n:250000
Cons ci ratio: 5.722049e-03	ci left: 6.505776e-01	ci right 6.543149e-01	k: 163112	n:250000
KS ci ratio: 1.004058e-01	ci left: 5.755613e-03	ci right 6.367924e-03	k: 1514	n:250000
PCDHA1   250000 perm   80 sec   (3123 perm/sec)   p_kst 6.056000e-03   p_cons 6.524480e-01   p_joint 1.330400e-02

Joint ci ratio: 6.722846e-02	ci left: 1.247355e-02	ci right 1.334505e-02	k: 3355	n:260000
Cons ci ratio: 5.607338e-03	ci left: 6.509048e-01	ci right 6.545687e-01	k: 169712	n:260000
KS ci ratio: 9.875919e-02	ci left: 5.725507e-03	ci right 6.324046e-03	k: 1565	n:260000
PCDHA1   260000 perm   84 sec   (3088 perm/sec)   p_kst 6.019231e-03   p_cons 6.527385e-01   p_joint 1.290385e-02

Outputting figure to mutsig2_images.part000000000126/PCDHA1.9_2899_260000_0.0060192_0.65274_0.012904.png
                gene_name: PCDHA1
               theta_stop: 0.099 
                    nperm: 260000 
                     p_ks: 0.0060 
        ci_ks_bounds_left: 0.0057 
       ci_ks_bounds_right: 0.0063 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.013 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.013 

Current progress: 16 percent done.
PARD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.115659e-02	ci left: 6.031711e-01	ci right 6.223632e-01	k: 6128	n:10000
Cons ci ratio: 2.608933e-02	ci left: 6.838544e-01	ci right 7.020331e-01	k: 6930	n:10000
KS ci ratio: 4.382332e-02	ci left: 4.346283e-01	ci right 4.542041e-01	k: 4444	n:10000
PARD3   10000 perm   2 sec   (4688 perm/sec)   p_kst 4.444000e-01   p_cons 6.930000e-01   p_joint 6.128000e-01

Outputting figure to mutsig2_images.part000000000126/PARD3.8_4206_10000_0.4444_0.693_0.6128.png
                gene_name: PARD3
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 18 percent done.
PBRM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.820259e-02	ci left: 1.928879e-01	ci right 2.086868e-01	k: 2007	n:10000
Cons ci ratio: 3.051687e-02	ci left: 6.130147e-01	ci right 6.321138e-01	k: 6226	n:10000
KS ci ratio: 1.251787e-01	ci left: 8.368370e-02	ci right 9.495688e-02	k: 892	n:10000
PBRM1   10000 perm   2 sec   (4290 perm/sec)   p_kst 8.920000e-02   p_cons 6.226000e-01   p_joint 2.007000e-01

Joint ci ratio: 5.667008e-02	ci left: 1.875504e-01	ci right 1.985390e-01	k: 3860	n:20000
Cons ci ratio: 2.131198e-02	ci left: 6.217098e-01	ci right 6.351529e-01	k: 12569	n:20000
KS ci ratio: 8.765693e-02	ci left: 8.690165e-02	ci right 9.491774e-02	k: 1817	n:20000
PBRM1   20000 perm   5 sec   (3908 perm/sec)   p_kst 9.085000e-02   p_cons 6.284500e-01   p_joint 1.930000e-01

Outputting figure to mutsig2_images.part000000000126/PBRM1.8_5021_20000_0.09085_0.62845_0.193.png
                gene_name: PBRM1
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.091 
        ci_ks_bounds_left: 0.087 
       ci_ks_bounds_right: 0.095 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 19 percent done.
PCDHA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.903033e-01	ci left: 3.681611e-02	ci right 4.465430e-02	k: 406	n:10000
Cons ci ratio: 2.887637e-02	ci left: 6.387484e-01	ci right 6.575652e-01	k: 6482	n:10000
KS ci ratio: 4.160103e-01	ci left: 6.974044e-03	ci right 1.072050e-02	k: 87	n:10000
PCDHA2   10000 perm   2 sec   (4828 perm/sec)   p_kst 8.700000e-03   p_cons 6.482000e-01   p_joint 4.060000e-02

Joint ci ratio: 2.067861e-01	ci left: 1.582303e-02	ci right 1.951911e-02	k: 352	n:20000
Cons ci ratio: 1.982310e-02	ci left: 6.549943e-01	ci right 6.681587e-01	k: 13232	n:20000
KS ci ratio: 3.126171e-01	ci left: 6.581657e-03	ci right 9.064647e-03	k: 155	n:20000
PCDHA2   20000 perm   5 sec   (4368 perm/sec)   p_kst 7.750000e-03   p_cons 6.616000e-01   p_joint 1.760000e-02

Joint ci ratio: 1.298848e-01	ci left: 2.754976e-02	ci right 3.140874e-02	k: 883	n:30000
Cons ci ratio: 1.615319e-02	ci left: 6.571170e-01	ci right 6.678515e-01	k: 19875	n:30000
KS ci ratio: 2.563593e-01	ci left: 6.742109e-03	ci right 8.754981e-03	k: 231	n:30000
PCDHA2   30000 perm   7 sec   (4205 perm/sec)   p_kst 7.700000e-03   p_cons 6.625000e-01   p_joint 2.943333e-02

Joint ci ratio: 1.334185e-01	ci left: 1.971394e-02	ci right 2.255618e-02	k: 844	n:40000
Cons ci ratio: 1.460173e-02	ci left: 6.383572e-01	ci right 6.477720e-01	k: 25723	n:40000
KS ci ratio: 2.293515e-01	ci left: 6.418461e-03	ci right 8.104261e-03	k: 289	n:40000
PCDHA2   40000 perm   10 sec   (4090 perm/sec)   p_kst 7.225000e-03   p_cons 6.430750e-01   p_joint 2.110000e-02

Joint ci ratio: 1.038621e-01	ci left: 2.625950e-02	ci right 2.915568e-02	k: 1384	n:50000
Cons ci ratio: 1.303621e-02	ci left: 6.397046e-01	ci right 6.481187e-01	k: 32196	n:50000
KS ci ratio: 1.997951e-01	ci left: 6.876477e-03	ci right 8.421510e-03	k: 381	n:50000
PCDHA2   50000 perm   13 sec   (3991 perm/sec)   p_kst 7.620000e-03   p_cons 6.439200e-01   p_joint 2.768000e-02

Joint ci ratio: 1.038785e-01	ci left: 2.197775e-02	ci right 2.440201e-02	k: 1390	n:60000
Cons ci ratio: 1.190655e-02	ci left: 6.398361e-01	ci right 6.475167e-01	k: 38621	n:60000
KS ci ratio: 1.888018e-01	ci left: 6.459656e-03	ci right 7.822004e-03	k: 427	n:60000
PCDHA2   60000 perm   15 sec   (3900 perm/sec)   p_kst 7.116667e-03   p_cons 6.436833e-01   p_joint 2.316667e-02

Joint ci ratio: 9.521129e-02	ci left: 2.251602e-02	ci right 2.478085e-02	k: 1654	n:70000
Cons ci ratio: 1.104596e-02	ci left: 6.391800e-01	ci right 6.462939e-01	k: 44992	n:70000
KS ci ratio: 1.741538e-01	ci left: 6.559698e-03	ci right 7.824527e-03	k: 502	n:70000
PCDHA2   70000 perm   18 sec   (3828 perm/sec)   p_kst 7.171429e-03   p_cons 6.427429e-01   p_joint 2.362857e-02

Joint ci ratio: 8.201540e-02	ci left: 2.662269e-02	ci right 2.891173e-02	k: 2220	n:80000
Cons ci ratio: 9.983596e-03	ci left: 6.550642e-01	ci right 6.616493e-01	k: 52669	n:80000
KS ci ratio: 1.607867e-01	ci left: 6.781776e-03	ci right 7.979366e-03	k: 589	n:80000
PCDHA2   80000 perm   21 sec   (3759 perm/sec)   p_kst 7.362500e-03   p_cons 6.583625e-01   p_joint 2.775000e-02

Joint ci ratio: 7.547503e-02	ci left: 2.800059e-02	ci right 3.020768e-02	k: 2618	n:90000
Cons ci ratio: 9.421616e-03	ci left: 6.548234e-01	ci right 6.610331e-01	k: 59214	n:90000
KS ci ratio: 1.522570e-01	ci left: 6.754214e-03	ci right 7.877892e-03	k: 657	n:90000
PCDHA2   90000 perm   24 sec   (3697 perm/sec)   p_kst 7.300000e-03   p_cons 6.579333e-01   p_joint 2.908889e-02

Joint ci ratio: 7.533738e-02	ci left: 2.536601e-02	ci right 2.736159e-02	k: 2635	n:100000
Cons ci ratio: 8.947340e-03	ci left: 6.545192e-01	ci right 6.604117e-01	k: 65747	n:100000
KS ci ratio: 1.449551e-01	ci left: 6.733512e-03	ci right 7.795369e-03	k: 725	n:100000
PCDHA2   100000 perm   27 sec   (3639 perm/sec)   p_kst 7.250000e-03   p_cons 6.574700e-01   p_joint 2.635000e-02

Joint ci ratio: 7.057400e-02	ci left: 2.631814e-02	ci right 2.825235e-02	k: 3000	n:110000
Cons ci ratio: 8.671329e-03	ci left: 6.472548e-01	ci right 6.529009e-01	k: 71509	n:110000
KS ci ratio: 1.368860e-01	ci left: 6.893223e-03	ci right 7.914825e-03	k: 813	n:110000
PCDHA2   110000 perm   31 sec   (3584 perm/sec)   p_kst 7.390909e-03   p_cons 6.500818e-01   p_joint 2.727273e-02

Joint ci ratio: 6.772722e-02	ci left: 2.623774e-02	ci right 2.808520e-02	k: 3258	n:120000
Cons ci ratio: 8.297429e-03	ci left: 6.476358e-01	ci right 6.530402e-01	k: 78041	n:120000
KS ci ratio: 1.301024e-01	ci left: 7.019615e-03	ci right 8.004410e-03	k: 900	n:120000
PCDHA2   120000 perm   34 sec   (3533 perm/sec)   p_kst 7.500000e-03   p_cons 6.503417e-01   p_joint 2.715000e-02

Joint ci ratio: 7.116429e-02	ci left: 2.199541e-02	ci right 2.362597e-02	k: 2964	n:130000
Cons ci ratio: 7.957146e-03	ci left: 6.485867e-01	ci right 6.537758e-01	k: 84654	n:130000
KS ci ratio: 1.234209e-01	ci left: 7.224540e-03	ci right 8.182231e-03	k: 1000	n:130000
PCDHA2   130000 perm   37 sec   (3483 perm/sec)   p_kst 7.692308e-03   p_cons 6.511846e-01   p_joint 2.280000e-02

Joint ci ratio: 6.385329e-02	ci left: 2.537658e-02	ci right 2.705740e-02	k: 3669	n:140000
Cons ci ratio: 7.662379e-03	ci left: 6.489973e-01	ci right 6.539964e-01	k: 91210	n:140000
KS ci ratio: 1.189314e-01	ci left: 7.241837e-03	ci right 8.164443e-03	k: 1077	n:140000
PCDHA2   140000 perm   41 sec   (3438 perm/sec)   p_kst 7.692857e-03   p_cons 6.515000e-01   p_joint 2.620714e-02

Joint ci ratio: 6.101538e-02	ci left: 2.596227e-02	ci right 2.760276e-02	k: 4016	n:150000
Cons ci ratio: 7.398979e-03	ci left: 6.493028e-01	ci right 6.541314e-01	k: 97758	n:150000
KS ci ratio: 1.149991e-01	ci left: 7.244421e-03	ci right 8.134768e-03	k: 1152	n:150000
PCDHA2   150000 perm   44 sec   (3402 perm/sec)   p_kst 7.680000e-03   p_cons 6.517200e-01   p_joint 2.677333e-02

Joint ci ratio: 6.054422e-02	ci left: 2.475770e-02	ci right 2.630956e-02	k: 4084	n:160000
Cons ci ratio: 7.167110e-03	ci left: 6.491844e-01	ci right 6.538601e-01	k: 104244	n:160000
KS ci ratio: 1.110687e-01	ci left: 7.295740e-03	ci right 8.159741e-03	k: 1235	n:160000
PCDHA2   160000 perm   47 sec   (3369 perm/sec)   p_kst 7.718750e-03   p_cons 6.515250e-01   p_joint 2.552500e-02

Joint ci ratio: 6.041682e-02	ci left: 2.343413e-02	ci right 2.489981e-02	k: 4107	n:170000
Cons ci ratio: 6.960260e-03	ci left: 6.487876e-01	ci right 6.533249e-01	k: 110680	n:170000
KS ci ratio: 1.073516e-01	ci left: 7.364380e-03	ci right 8.205478e-03	k: 1322	n:170000
PCDHA2   170000 perm   51 sec   (3335 perm/sec)   p_kst 7.776471e-03   p_cons 6.510588e-01   p_joint 2.415882e-02

Joint ci ratio: 5.799881e-02	ci left: 2.403168e-02	ci right 2.547257e-02	k: 4454	n:180000
Cons ci ratio: 6.757179e-03	ci left: 6.493214e-01	ci right 6.537293e-01	k: 117275	n:180000
KS ci ratio: 1.040959e-01	ci left: 7.409584e-03	ci right 8.228609e-03	k: 1406	n:180000
PCDHA2   180000 perm   55 sec   (3302 perm/sec)   p_kst 7.811111e-03   p_cons 6.515278e-01   p_joint 2.474444e-02

Joint ci ratio: 5.903579e-02	ci left: 2.200899e-02	ci right 2.335299e-02	k: 4308	n:190000
Cons ci ratio: 6.573243e-03	ci left: 6.496371e-01	ci right 6.539267e-01	k: 123839	n:190000
KS ci ratio: 1.013597e-01	ci left: 7.414458e-03	ci right 8.211196e-03	k: 1483	n:190000
PCDHA2   190000 perm   58 sec   (3268 perm/sec)   p_kst 7.805263e-03   p_cons 6.517842e-01   p_joint 2.267368e-02

Joint ci ratio: 5.796599e-02	ci left: 2.170660e-02	ci right 2.300730e-02	k: 4470	n:200000
Cons ci ratio: 6.410536e-03	ci left: 6.494270e-01	ci right 6.536086e-01	k: 130304	n:200000
KS ci ratio: 9.879658e-02	ci left: 7.423975e-03	ci right 8.200393e-03	k: 1561	n:200000
PCDHA2   200000 perm   62 sec   (3234 perm/sec)   p_kst 7.805000e-03   p_cons 6.515200e-01   p_joint 2.235000e-02

Outputting figure to mutsig2_images.part000000000126/PCDHA2.8_2950_200000_0.007805_0.65152_0.02235.png
                gene_name: PCDHA2
               theta_stop: 0.099 
                    nperm: 200000 
                     p_ks: 0.0078 
        ci_ks_bounds_left: 0.0074 
       ci_ks_bounds_right: 0.0082 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.022 
     ci_joint_bounds_left: 0.022 
    ci_joint_bounds_right: 0.023 

Current progress: 21 percent done.
PCDH9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.035235e-02	ci left: 2.876580e-01	ci right 3.056606e-01	k: 2966	n:10000
KS ci ratio: 3.198987e-02	ci left: 5.905209e-01	ci right 6.098207e-01	k: 6002	n:10000
PCDH9   10000 perm   2 sec   (4937 perm/sec)   p_kst 6.002000e-01   p_cons 2.966000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000126/PCDH9.7_3730_10000_0.6002_0.2966_1.png
                gene_name: PCDH9
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 23 percent done.
PAQR9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.564690e-02	ci left: 5.374815e-01	ci right 5.570909e-01	k: 5473	n:10000
Cons ci ratio: 1.473093e-02	ci left: 8.696873e-01	ci right 8.826927e-01	k: 8763	n:10000
KS ci ratio: 5.232375e-02	ci left: 3.499877e-01	ci right 3.688943e-01	k: 3594	n:10000
PAQR9   10000 perm   2 sec   (5541 perm/sec)   p_kst 3.594000e-01   p_cons 8.763000e-01   p_joint 5.473000e-01

Outputting figure to mutsig2_images.part000000000126/PAQR9.6_1138_10000_0.3594_0.8763_0.5473.png
                gene_name: PAQR9
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 25 percent done.
PARP8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.755077e-02	ci left: 1.955478e-01	ci right 2.114253e-01	k: 2034	n:10000
Cons ci ratio: 2.581993e-02	ci left: 6.882897e-01	ci right 7.063952e-01	k: 6974	n:10000
KS ci ratio: 1.057501e-01	ci left: 1.143760e-01	ci right 1.272458e-01	k: 1207	n:10000
PARP8   10000 perm   2 sec   (4856 perm/sec)   p_kst 1.207000e-01   p_cons 6.974000e-01   p_joint 2.034000e-01

Joint ci ratio: 5.510092e-02	ci left: 1.963554e-01	ci right 2.075314e-01	k: 4038	n:20000
Cons ci ratio: 1.859819e-02	ci left: 6.830855e-01	ci right 6.959593e-01	k: 13791	n:20000
KS ci ratio: 7.581674e-02	ci left: 1.134122e-01	ci right 1.223992e-01	k: 2357	n:20000
PARP8   20000 perm   5 sec   (4411 perm/sec)   p_kst 1.178500e-01   p_cons 6.895500e-01   p_joint 2.019000e-01

Outputting figure to mutsig2_images.part000000000126/PARP8.6_2669_20000_0.11785_0.68955_0.2019.png
                gene_name: PARP8
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 26 percent done.
PASK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.877649e-02	ci left: 8.056233e-01	ci right 8.209937e-01	k: 8134	n:10000
KS ci ratio: 1.392492e-02	ci left: 8.816556e-01	ci right 8.941174e-01	k: 8880	n:10000
PASK   10000 perm   2 sec   (4941 perm/sec)   p_kst 8.880000e-01   p_cons 8.134000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000126/PASK.6_4040_10000_0.888_0.8134_1.png
                gene_name: PASK
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 28 percent done.
PBX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.069448e-02	ci left: 1.502147e-01	ci right 1.645855e-01	k: 1573	n:10000
Cons ci ratio: 1.115553e-01	ci left: 1.037366e-01	ci right 1.160916e-01	k: 1098	n:10000
KS ci ratio: 7.385259e-02	ci left: 2.116174e-01	ci right 2.279461e-01	k: 2197	n:10000
PBX1   10000 perm   2 sec   (5891 perm/sec)   p_kst 2.197000e-01   p_cons 1.098000e-01   p_joint 1.573000e-01

Joint ci ratio: 4.500607e-02	ci left: 2.687702e-01	ci right 2.811953e-01	k: 5499	n:20000
Cons ci ratio: 7.876228e-02	ci left: 1.058430e-01	ci right 1.145707e-01	k: 2203	n:20000
KS ci ratio: 4.940639e-02	ci left: 2.334498e-01	ci right 2.453261e-01	k: 4787	n:20000
PBX1   20000 perm   4 sec   (5230 perm/sec)   p_kst 2.393500e-01   p_cons 1.101500e-01   p_joint 2.749500e-01

Outputting figure to mutsig2_images.part000000000126/PBX1.6_1329_20000_0.23935_0.11015_0.27495.png
                gene_name: PBX1
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 30 percent done.
PCCB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.447923e-01	ci left: 2.193497e-02	ci right 2.814593e-02	k: 249	n:10000
Cons ci ratio: 1.247192e-01	ci left: 8.426661e-02	ci right 9.557360e-02	k: 898	n:10000
KS ci ratio: 3.350785e-01	ci left: 1.123901e-02	ci right 1.585081e-02	k: 134	n:10000
PCCB   10000 perm   2 sec   (5422 perm/sec)   p_kst 1.340000e-02   p_cons 8.980000e-02   p_joint 2.490000e-02

Joint ci ratio: 1.468522e-01	ci left: 3.186878e-02	ci right 3.696774e-02	k: 687	n:20000
Cons ci ratio: 8.728774e-02	ci left: 8.758778e-02	ci right 9.563141e-02	k: 1831	n:20000
KS ci ratio: 2.301256e-01	ci left: 1.265334e-02	ci right 1.599006e-02	k: 285	n:20000
PCCB   20000 perm   4 sec   (4850 perm/sec)   p_kst 1.425000e-02   p_cons 9.155000e-02   p_joint 3.435000e-02

Joint ci ratio: 1.574875e-01	ci left: 1.863797e-02	ci right 2.185589e-02	k: 606	n:30000
Cons ci ratio: 7.162986e-02	ci left: 8.750616e-02	ci right 9.404001e-02	k: 2722	n:30000
KS ci ratio: 1.917907e-01	ci left: 1.241520e-02	ci right 1.508019e-02	k: 411	n:30000
PCCB   30000 perm   6 sec   (4636 perm/sec)   p_kst 1.370000e-02   p_cons 9.073333e-02   p_joint 2.020000e-02

Joint ci ratio: 1.339866e-01	ci left: 1.954468e-02	ci right 2.237546e-02	k: 837	n:40000
Cons ci ratio: 6.215280e-02	ci left: 8.763182e-02	ci right 9.327780e-02	k: 3617	n:40000
KS ci ratio: 1.669198e-01	ci left: 1.246390e-02	ci right 1.475752e-02	k: 543	n:40000
PCCB   40000 perm   9 sec   (4489 perm/sec)   p_kst 1.357500e-02   p_cons 9.042500e-02   p_joint 2.092500e-02

Joint ci ratio: 1.569638e-01	ci left: 1.135228e-02	ci right 1.330495e-02	k: 615	n:50000
Cons ci ratio: 5.592843e-02	ci left: 8.695248e-02	ci right 9.197530e-02	k: 4472	n:50000
KS ci ratio: 1.543220e-01	ci left: 1.175611e-02	ci right 1.374106e-02	k: 636	n:50000
PCCB   50000 perm   11 sec   (4367 perm/sec)   p_kst 1.272000e-02   p_cons 8.944000e-02   p_joint 1.230000e-02

Joint ci ratio: 1.414774e-01	ci left: 1.173889e-02	ci right 1.354204e-02	k: 757	n:60000
Cons ci ratio: 5.091811e-02	ci left: 8.760632e-02	ci right 9.220010e-02	k: 5393	n:60000
KS ci ratio: 1.412888e-01	ci left: 1.177106e-02	ci right 1.357653e-02	k: 759	n:60000
PCCB   60000 perm   14 sec   (4295 perm/sec)   p_kst 1.265000e-02   p_cons 8.988333e-02   p_joint 1.261667e-02

Joint ci ratio: 1.533962e-01	ci left: 8.533471e-03	ci right 9.964795e-03	k: 646	n:70000
Cons ci ratio: 4.719051e-02	ci left: 8.760719e-02	ci right 9.185546e-02	k: 6280	n:70000
KS ci ratio: 1.314604e-01	ci left: 1.171771e-02	ci right 1.338020e-02	k: 877	n:70000
PCCB   70000 perm   17 sec   (4218 perm/sec)   p_kst 1.252857e-02   p_cons 8.971429e-02   p_joint 9.228571e-03

Joint ci ratio: 1.460453e-01	ci left: 8.272841e-03	ci right 9.588143e-03	k: 713	n:80000
Cons ci ratio: 4.416734e-02	ci left: 8.765428e-02	ci right 9.162554e-02	k: 7170	n:80000
KS ci ratio: 1.238117e-01	ci left: 1.160828e-02	ci right 1.315238e-02	k: 989	n:80000
PCCB   80000 perm   19 sec   (4148 perm/sec)   p_kst 1.236250e-02   p_cons 8.962500e-02   p_joint 8.912500e-03

Joint ci ratio: 1.382366e-01	ci left: 8.243068e-03	ci right 9.477789e-03	k: 796	n:90000
Cons ci ratio: 4.176198e-02	ci left: 8.730150e-02	ci right 9.103614e-02	k: 8024	n:90000
KS ci ratio: 1.180116e-01	ci left: 1.139591e-02	ci right 1.283579e-02	k: 1089	n:90000
PCCB   90000 perm   22 sec   (4080 perm/sec)   p_kst 1.210000e-02   p_cons 8.915556e-02   p_joint 8.844444e-03

Joint ci ratio: 1.410912e-01	ci left: 7.119297e-03	ci right 8.209551e-03	k: 765	n:100000
Cons ci ratio: 3.957669e-02	ci left: 8.756915e-02	ci right 9.111471e-02	k: 8933	n:100000
KS ci ratio: 1.121485e-01	ci left: 1.139265e-02	ci right 1.275587e-02	k: 1206	n:100000
PCCB   100000 perm   25 sec   (4014 perm/sec)   p_kst 1.206000e-02   p_cons 8.933000e-02   p_joint 7.650000e-03

Joint ci ratio: 1.344930e-01	ci left: 7.147972e-03	ci right 8.187330e-03	k: 842	n:110000
Cons ci ratio: 3.772100e-02	ci left: 8.771118e-02	ci right 9.109233e-02	k: 9833	n:110000
KS ci ratio: 1.075336e-01	ci left: 1.129409e-02	ci right 1.258638e-02	k: 1312	n:110000
PCCB   110000 perm   28 sec   (3948 perm/sec)   p_kst 1.192727e-02   p_cons 8.939091e-02   p_joint 7.654545e-03

Joint ci ratio: 1.366752e-01	ci left: 6.342808e-03	ci right 7.281264e-03	k: 816	n:120000
Cons ci ratio: 3.605058e-02	ci left: 8.807247e-02	ci right 9.131406e-02	k: 10762	n:120000
KS ci ratio: 1.030053e-01	ci left: 1.131037e-02	ci right 1.254672e-02	k: 1430	n:120000
PCCB   120000 perm   31 sec   (3889 perm/sec)   p_kst 1.191667e-02   p_cons 8.968333e-02   p_joint 6.800000e-03

Joint ci ratio: 1.652924e-01	ci left: 3.951556e-03	ci right 4.670831e-03	k: 559	n:130000
Cons ci ratio: 3.461169e-02	ci left: 8.825120e-02	ci right 9.136712e-02	k: 11674	n:130000
KS ci ratio: 9.929705e-02	ci left: 1.125758e-02	ci right 1.244127e-02	k: 1539	n:130000
PCCB   130000 perm   34 sec   (3827 perm/sec)   p_kst 1.183846e-02   p_cons 8.980000e-02   p_joint 4.300000e-03

Joint ci ratio: 1.641450e-01	ci left: 3.724053e-03	ci right 4.396743e-03	k: 567	n:140000
Cons ci ratio: 3.340389e-02	ci left: 8.805924e-02	ci right 9.105779e-02	k: 12537	n:140000
KS ci ratio: 9.546573e-02	ci left: 1.133157e-02	ci right 1.247450e-02	k: 1665	n:140000
PCCB   140000 perm   37 sec   (3767 perm/sec)   p_kst 1.189286e-02   p_cons 8.955000e-02   p_joint 4.050000e-03

Joint ci ratio: 1.091846e-01	ci left: 8.054581e-03	ci right 8.991232e-03	k: 1277	n:150000
Cons ci ratio: 3.227858e-02	ci left: 8.807323e-02	ci right 9.096933e-02	k: 13427	n:150000
KS ci ratio: 9.207220e-02	ci left: 1.138994e-02	ci right 1.249571e-02	k: 1790	n:150000
PCCB   150000 perm   40 sec   (3712 perm/sec)   p_kst 1.193333e-02   p_cons 8.951333e-02   p_joint 8.513333e-03

Joint ci ratio: 1.223477e-01	ci left: 5.984804e-03	ci right 6.770744e-03	k: 1019	n:160000
Cons ci ratio: 3.128504e-02	ci left: 8.795663e-02	ci right 9.075827e-02	k: 14296	n:160000
KS ci ratio: 8.866597e-02	ci left: 1.153333e-02	ci right 1.260946e-02	k: 1930	n:160000
PCCB   160000 perm   44 sec   (3663 perm/sec)   p_kst 1.206250e-02   p_cons 8.935000e-02   p_joint 6.368750e-03

Joint ci ratio: 1.016588e-01	ci left: 8.229594e-03	ci right 9.116696e-03	k: 1473	n:170000
Cons ci ratio: 3.035816e-02	ci left: 8.796014e-02	ci right 9.067742e-02	k: 15183	n:170000
KS ci ratio: 8.618222e-02	ci left: 1.150507e-02	ci right 1.254697e-02	k: 2043	n:170000
PCCB   170000 perm   47 sec   (3619 perm/sec)   p_kst 1.201765e-02   p_cons 8.931176e-02   p_joint 8.664706e-03

Joint ci ratio: 9.849921e-02	ci left: 8.292392e-03	ci right 9.156876e-03	k: 1569	n:180000
Cons ci ratio: 2.949898e-02	ci left: 8.801953e-02	ci right 9.066038e-02	k: 16080	n:180000
KS ci ratio: 8.344699e-02	ci left: 1.160545e-02	ci right 1.262146e-02	k: 2179	n:180000
PCCB   180000 perm   50 sec   (3578 perm/sec)   p_kst 1.210556e-02   p_cons 8.933333e-02   p_joint 8.716667e-03

Outputting figure to mutsig2_images.part000000000126/PCCB.6_1744_180000_0.012106_0.089333_0.0087167.png
                gene_name: PCCB
               theta_stop: 0.098 
                    nperm: 180000 
                     p_ks: 0.012 
        ci_ks_bounds_left: 0.012 
       ci_ks_bounds_right: 0.013 
                   p_cons: 0.089 
      ci_cons_bounds_left: 0.088 
     ci_cons_bounds_right: 0.091 
                  p_joint: 0.0087 
     ci_joint_bounds_left: 0.0083 
    ci_joint_bounds_right: 0.0092 

Current progress: 32 percent done.
PCDH11Y
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside exons of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.363748e-02	ci left: 4.367232e-01	ci right 4.563080e-01	k: 4465	n:10000
Cons ci ratio: 4.724923e-02	ci left: 3.979471e-01	ci right 4.173068e-01	k: 4076	n:10000
KS ci ratio: 5.794040e-02	ci left: 3.048095e-01	ci right 3.230990e-01	k: 3139	n:10000
PCDH11Y   10000 perm   2 sec   (4681 perm/sec)   p_kst 3.139000e-01   p_cons 4.076000e-01   p_joint 4.465000e-01

Outputting figure to mutsig2_images.part000000000126/PCDH11Y.5_4101_10000_0.3139_0.4076_0.4465.png
                gene_name: PCDH11Y
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 33 percent done.
PCDH8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.399229e-02	ci left: 4.327331e-01	ci right 4.523004e-01	k: 4425	n:10000
KS ci ratio: 1.119938e-02	ci left: 9.192503e-01	ci right 9.297008e-01	k: 9246	n:10000
PCDH8   10000 perm   2 sec   (5397 perm/sec)   p_kst 9.246000e-01   p_cons 4.425000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000126/PCDH8.6_3225_10000_0.9246_0.4425_1.png
                gene_name: PCDH8
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 35 percent done.
PCDHA13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.303999e-02	ci left: 5.748680e-01	ci right 5.942827e-01	k: 5846	n:10000
Cons ci ratio: 5.210859e-02	ci left: 3.518763e-01	ci right 3.708045e-01	k: 3613	n:10000
KS ci ratio: 3.924117e-02	ci left: 4.895516e-01	ci right 5.092488e-01	k: 4994	n:10000
PCDHA13   10000 perm   2 sec   (5234 perm/sec)   p_kst 4.994000e-01   p_cons 3.613000e-01   p_joint 5.846000e-01

Outputting figure to mutsig2_images.part000000000126/PCDHA13.6_2899_10000_0.4994_0.3613_0.5846.png
                gene_name: PCDHA13
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 37 percent done.
PARP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.321103e-02	ci left: 7.316880e-01	ci right 7.489718e-01	k: 7404	n:10000
Cons ci ratio: 3.795959e-02	ci left: 5.061517e-01	ci right 5.258389e-01	k: 5160	n:10000
KS ci ratio: 2.984537e-02	ci left: 6.234656e-01	ci right 6.424569e-01	k: 6330	n:10000
PARP4   10000 perm   2 sec   (4538 perm/sec)   p_kst 6.330000e-01   p_cons 5.160000e-01   p_joint 7.404000e-01

Outputting figure to mutsig2_images.part000000000126/PARP4.5_5307_10000_0.633_0.516_0.7404.png
                gene_name: PARP4
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 39 percent done.
PARP9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.457788e-02	ci left: 7.088662e-01	ci right 7.266068e-01	k: 7178	n:10000
Cons ci ratio: 5.808866e-02	ci left: 3.037185e-01	ci right 3.219906e-01	k: 3128	n:10000
KS ci ratio: 3.379388e-02	ci left: 5.638367e-01	ci right 5.833204e-01	k: 5736	n:10000
PARP9   10000 perm   2 sec   (5057 perm/sec)   p_kst 5.736000e-01   p_cons 3.128000e-01   p_joint 7.178000e-01

Outputting figure to mutsig2_images.part000000000126/PARP9.5_2658_10000_0.5736_0.3128_0.7178.png
                gene_name: PARP9
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 40 percent done.
PCDH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.253337e-02	ci left: 2.731952e-01	ci right 2.909319e-01	k: 2820	n:10000
Cons ci ratio: 3.702810e-02	ci left: 5.185589e-01	ci right 5.382245e-01	k: 5284	n:10000
KS ci ratio: 6.881274e-02	ci left: 2.364969e-01	ci right 2.534520e-01	k: 2449	n:10000
PCDH1   10000 perm   2 sec   (4931 perm/sec)   p_kst 2.449000e-01   p_cons 5.284000e-01   p_joint 2.820000e-01

Outputting figure to mutsig2_images.part000000000126/PCDH1.5_3818_10000_0.2449_0.5284_0.282.png
                gene_name: PCDH1
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 42 percent done.
PAQR8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.803670e-01	ci left: 4.101996e-02	ci right 4.924766e-02	k: 450	n:10000
Cons ci ratio: 4.539792e-01	ci left: 5.726273e-03	ci right 9.170022e-03	k: 73	n:10000
KS ci ratio: 4.679252e-02	ci left: 4.026288e-01	ci right 4.220223e-01	k: 4123	n:10000
PAQR8   10000 perm   2 sec   (6352 perm/sec)   p_kst 4.123000e-01   p_cons 7.300000e-03   p_joint 4.500000e-02

Joint ci ratio: 1.352622e-01	ci left: 3.756809e-02	ci right 4.306657e-02	k: 805	n:20000
Cons ci ratio: 3.221178e-01	ci left: 6.167283e-03	ci right 8.579269e-03	k: 146	n:20000
KS ci ratio: 3.304945e-02	ci left: 4.060645e-01	ci right 4.197608e-01	k: 8258	n:20000
PAQR8   20000 perm   4 sec   (5618 perm/sec)   p_kst 4.129000e-01   p_cons 7.300000e-03   p_joint 4.025000e-02

Joint ci ratio: 1.404733e-01	ci left: 2.352025e-02	ci right 2.710582e-02	k: 758	n:30000
Cons ci ratio: 2.689088e-01	ci left: 6.087891e-03	ci right 8.009438e-03	k: 210	n:30000
KS ci ratio: 2.709350e-02	ci left: 4.053913e-01	ci right 4.165592e-01	k: 12329	n:30000
PAQR8   30000 perm   6 sec   (5350 perm/sec)   p_kst 4.109667e-01   p_cons 7.000000e-03   p_joint 2.526667e-02

Joint ci ratio: 8.268459e-02	ci left: 5.099609e-02	ci right 5.541905e-02	k: 2127	n:40000
Cons ci ratio: 2.360005e-01	ci left: 6.041636e-03	ci right 7.681186e-03	k: 273	n:40000
KS ci ratio: 2.351458e-02	ci left: 4.050994e-01	ci right 4.147636e-01	k: 16397	n:40000
PAQR8   40000 perm   8 sec   (5178 perm/sec)   p_kst 4.099250e-01   p_cons 6.825000e-03   p_joint 5.317500e-02

Joint ci ratio: 1.012600e-01	ci left: 2.762456e-02	ci right 3.059045e-02	k: 1454	n:50000
Cons ci ratio: 2.079007e-01	ci left: 6.325885e-03	ci right 7.812210e-03	k: 352	n:50000
KS ci ratio: 2.102641e-02	ci left: 4.057442e-01	ci right 4.143862e-01	k: 20503	n:50000
PAQR8   50000 perm   10 sec   (5059 perm/sec)   p_kst 4.100600e-01   p_cons 7.040000e-03   p_joint 2.908000e-02

Joint ci ratio: 7.566557e-02	ci left: 4.119426e-02	ci right 4.445015e-02	k: 2568	n:60000
Cons ci ratio: 1.890243e-01	ci left: 6.443773e-03	ci right 7.804557e-03	k: 426	n:60000
KS ci ratio: 1.922337e-02	ci left: 4.053950e-01	ci right 4.132804e-01	k: 24560	n:60000
PAQR8   60000 perm   12 sec   (4948 perm/sec)   p_kst 4.093333e-01   p_cons 7.100000e-03   p_joint 4.280000e-02

Joint ci ratio: 6.860850e-02	ci left: 4.302637e-02	ci right 4.609724e-02	k: 3118	n:70000
Cons ci ratio: 1.741538e-01	ci left: 6.559698e-03	ci right 7.824527e-03	k: 502	n:70000
KS ci ratio: 1.780500e-02	ci left: 4.054830e-01	ci right 4.127817e-01	k: 28639	n:70000
PAQR8   70000 perm   14 sec   (4847 perm/sec)   p_kst 4.091286e-01   p_cons 7.171429e-03   p_joint 4.454286e-02

Joint ci ratio: 9.030277e-02	ci left: 2.197232e-02	ci right 2.406247e-02	k: 1840	n:80000
Cons ci ratio: 1.614774e-01	ci left: 6.721780e-03	ci right 7.914369e-03	k: 584	n:80000
KS ci ratio: 1.681691e-02	ci left: 4.010588e-01	ci right 4.078731e-01	k: 32357	n:80000
PAQR8   80000 perm   17 sec   (4745 perm/sec)   p_kst 4.044625e-01   p_cons 7.300000e-03   p_joint 2.300000e-02

Joint ci ratio: 8.052451e-02	ci left: 2.462148e-02	ci right 2.669814e-02	k: 2308	n:90000
Cons ci ratio: 1.523737e-01	ci left: 6.743524e-03	ci right 7.866362e-03	k: 656	n:90000
KS ci ratio: 1.584006e-02	ci left: 4.017128e-01	ci right 4.081378e-01	k: 36443	n:90000
PAQR8   90000 perm   19 sec   (4650 perm/sec)   p_kst 4.049222e-01   p_cons 7.288889e-03   p_joint 2.564444e-02

Joint ci ratio: 6.794840e-02	ci left: 3.111446e-02	ci right 3.331279e-02	k: 3220	n:100000
Cons ci ratio: 1.448546e-01	ci left: 6.743152e-03	ci right 7.805728e-03	k: 726	n:100000
KS ci ratio: 1.527136e-02	ci left: 3.941453e-01	ci right 4.002207e-01	k: 39718	n:100000
PAQR8   100000 perm   22 sec   (4562 perm/sec)   p_kst 3.971800e-01   p_cons 7.260000e-03   p_joint 3.220000e-02

Joint ci ratio: 6.082725e-02	ci left: 3.527406e-02	ci right 3.749592e-02	k: 4001	n:110000
Cons ci ratio: 1.383490e-01	ci left: 6.743963e-03	ci right 7.755005e-03	k: 796	n:110000
KS ci ratio: 1.454104e-02	ci left: 3.949330e-01	ci right 4.007269e-01	k: 43761	n:110000
PAQR8   110000 perm   25 sec   (4480 perm/sec)   p_kst 3.978273e-01   p_cons 7.236364e-03   p_joint 3.637273e-02

Joint ci ratio: 6.845396e-02	ci left: 2.568867e-02	ci right 2.751764e-02	k: 3191	n:120000
Cons ci ratio: 1.324173e-01	ci left: 6.769707e-03	ci right 7.737669e-03	k: 869	n:120000
KS ci ratio: 1.392159e-02	ci left: 3.950707e-01	ci right 4.006176e-01	k: 47741	n:120000
PAQR8   120000 perm   28 sec   (4359 perm/sec)   p_kst 3.978417e-01   p_cons 7.241667e-03   p_joint 2.659167e-02

Joint ci ratio: 6.627223e-02	ci left: 2.533845e-02	ci right 2.708277e-02	k: 3406	n:130000
Cons ci ratio: 1.272564e-01	ci left: 6.784824e-03	ci right 7.714283e-03	k: 941	n:130000
KS ci ratio: 1.336051e-02	ci left: 3.957141e-01	ci right 4.010443e-01	k: 51789	n:130000
PAQR8   130000 perm   30 sec   (4290 perm/sec)   p_kst 3.983769e-01   p_cons 7.238462e-03   p_joint 2.620000e-02

Joint ci ratio: 6.495210e-02	ci left: 2.453290e-02	ci right 2.618684e-02	k: 3549	n:140000
Cons ci ratio: 1.222312e-01	ci left: 6.846887e-03	ci right 7.745129e-03	k: 1020	n:140000
KS ci ratio: 1.292411e-02	ci left: 3.939719e-01	ci right 3.991038e-01	k: 55515	n:140000
PAQR8   140000 perm   33 sec   (4194 perm/sec)   p_kst 3.965357e-01   p_cons 7.285714e-03   p_joint 2.535000e-02

Joint ci ratio: 6.373278e-02	ci left: 2.381540e-02	ci right 2.538971e-02	k: 3689	n:150000
Cons ci ratio: 1.172755e-01	ci left: 6.959549e-03	ci right 7.832988e-03	k: 1108	n:150000
KS ci ratio: 1.247622e-02	ci left: 3.944294e-01	ci right 3.993879e-01	k: 59536	n:150000
PAQR8   150000 perm   36 sec   (4120 perm/sec)   p_kst 3.969067e-01   p_cons 7.386667e-03   p_joint 2.459333e-02

Joint ci ratio: 5.831871e-02	ci left: 2.666101e-02	ci right 2.826868e-02	k: 4393	n:160000
Cons ci ratio: 1.131635e-01	ci left: 7.022321e-03	ci right 7.870674e-03	k: 1190	n:160000
KS ci ratio: 1.209206e-02	ci left: 3.940332e-01	ci right 3.988331e-01	k: 63429	n:160000
PAQR8   160000 perm   40 sec   (4048 perm/sec)   p_kst 3.964313e-01   p_cons 7.437500e-03   p_joint 2.745625e-02

Joint ci ratio: 4.948391e-02	ci left: 3.471837e-02	ci right 3.648574e-02	k: 6051	n:170000
Cons ci ratio: 1.092398e-01	ci left: 7.106792e-03	ci right 7.933665e-03	k: 1277	n:170000
KS ci ratio: 1.173482e-02	ci left: 3.939502e-01	ci right 3.986063e-01	k: 67367	n:170000
PAQR8   170000 perm   43 sec   (3989 perm/sec)   p_kst 3.962765e-01   p_cons 7.511765e-03   p_joint 3.559412e-02

Joint ci ratio: 4.866353e-02	ci left: 3.394708e-02	ci right 3.564573e-02	k: 6262	n:180000
Cons ci ratio: 1.056977e-01	ci left: 7.182328e-03	ci right 7.989208e-03	k: 1364	n:180000
KS ci ratio: 1.140073e-02	ci left: 3.941614e-01	ci right 3.986864e-01	k: 71356	n:180000
PAQR8   180000 perm   46 sec   (3932 perm/sec)   p_kst 3.964222e-01   p_cons 7.577778e-03   p_joint 3.478889e-02

Joint ci ratio: 4.984000e-02	ci left: 3.074515e-02	ci right 3.232182e-02	k: 5990	n:190000
Cons ci ratio: 1.031978e-01	ci left: 7.147724e-03	ci right 7.930572e-03	k: 1431	n:190000
KS ci ratio: 1.109511e-02	ci left: 3.942889e-01	ci right 3.986932e-01	k: 75333	n:190000
PAQR8   190000 perm   49 sec   (3880 perm/sec)   p_kst 3.964895e-01   p_cons 7.531579e-03   p_joint 3.152632e-02

Joint ci ratio: 4.769609e-02	ci left: 3.189023e-02	ci right 3.345335e-02	k: 6533	n:200000
Cons ci ratio: 1.008334e-01	ci left: 7.121658e-03	ci right 7.882722e-03	k: 1499	n:200000
KS ci ratio: 1.081823e-02	ci left: 3.941653e-01	ci right 3.984577e-01	k: 79262	n:200000
PAQR8   200000 perm   52 sec   (3826 perm/sec)   p_kst 3.963100e-01   p_cons 7.495000e-03   p_joint 3.266500e-02

Joint ci ratio: 4.944767e-02	ci left: 2.833817e-02	ci right 2.977963e-02	k: 6101	n:210000
Cons ci ratio: 9.875143e-02	ci left: 7.079679e-03	ci right 7.819729e-03	k: 1563	n:210000
KS ci ratio: 1.055385e-02	ci left: 3.943831e-01	ci right 3.985721e-01	k: 83260	n:210000
PAQR8   210000 perm   56 sec   (3774 perm/sec)   p_kst 3.964762e-01   p_cons 7.442857e-03   p_joint 2.905238e-02

Outputting figure to mutsig2_images.part000000000126/PAQR8.4_1069_210000_0.39648_0.0074429_0.029052.png
                gene_name: PAQR8
               theta_stop: 0.099 
                    nperm: 210000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.0074 
      ci_cons_bounds_left: 0.0071 
     ci_cons_bounds_right: 0.0078 
                  p_joint: 0.029 
     ci_joint_bounds_left: 0.028 
    ci_joint_bounds_right: 0.030 

Current progress: 44 percent done.
PARP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.743342e-02	ci left: 8.274759e-01	ci right 8.421285e-01	k: 8349	n:10000
KS ci ratio: 2.662392e-02	ci left: 6.750875e-01	ci right 6.934051e-01	k: 6843	n:10000
PARP6   10000 perm   2 sec   (5969 perm/sec)   p_kst 6.843000e-01   p_cons 8.349000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000126/PARP6.4_1981_10000_0.6843_0.8349_1.png
                gene_name: PARP6
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 46 percent done.
PARS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.563971e-02	ci left: 5.375817e-01	ci right 5.571907e-01	k: 5474	n:10000
Cons ci ratio: 6.123146e-02	ci left: 2.817130e-01	ci right 2.996091e-01	k: 2906	n:10000
KS ci ratio: 4.243945e-02	ci left: 4.504939e-01	ci right 4.701293e-01	k: 4603	n:10000
PARS2   10000 perm   2 sec   (6274 perm/sec)   p_kst 4.603000e-01   p_cons 2.906000e-01   p_joint 5.474000e-01

Outputting figure to mutsig2_images.part000000000126/PARS2.4_1432_10000_0.4603_0.2906_0.5474.png
                gene_name: PARS2
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 47 percent done.
PAX3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.554127e-02	ci left: 3.231670e-01	ci right 3.417307e-01	k: 3324	n:10000
Cons ci ratio: 1.233669e-01	ci left: 8.601581e-02	ci right 9.742332e-02	k: 916	n:10000
KS ci ratio: 8.834118e-02	ci left: 1.571841e-01	ci right 1.718119e-01	k: 1644	n:10000
PAX3   10000 perm   2 sec   (6121 perm/sec)   p_kst 1.644000e-01   p_cons 9.160000e-02   p_joint 3.324000e-01

Joint ci ratio: 5.644373e-02	ci left: 1.887868e-01	ci right 1.998022e-01	k: 3885	n:20000
Cons ci ratio: 8.653582e-02	ci left: 8.900926e-02	ci right 9.710950e-02	k: 1860	n:20000
KS ci ratio: 6.480485e-02	ci left: 1.496151e-01	ci right 1.596855e-01	k: 3092	n:20000
PAX3   20000 perm   4 sec   (5507 perm/sec)   p_kst 1.546000e-01   p_cons 9.300000e-02   p_joint 1.942500e-01

Outputting figure to mutsig2_images.part000000000126/PAX3.4_1687_20000_0.1546_0.093_0.19425.png
                gene_name: PAX3
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.093 
      ci_cons_bounds_left: 0.089 
     ci_cons_bounds_right: 0.097 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 49 percent done.
PAX4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.070558e-02	ci left: 2.267179e-01	ci right 2.434367e-01	k: 2350	n:10000
Cons ci ratio: 6.437385e-02	ci left: 2.617124e-01	ci right 2.792215e-01	k: 2704	n:10000
KS ci ratio: 9.141929e-02	ci left: 1.481542e-01	ci right 1.624472e-01	k: 1552	n:10000
PAX4   10000 perm   2 sec   (6157 perm/sec)   p_kst 1.552000e-01   p_cons 2.704000e-01   p_joint 2.350000e-01

Outputting figure to mutsig2_images.part000000000126/PAX4.4_1068_10000_0.1552_0.2704_0.235.png
                gene_name: PAX4
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 51 percent done.
PAX8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.070558e-02	ci left: 2.267179e-01	ci right 2.434367e-01	k: 2350	n:10000
Cons ci ratio: 1.164346e-01	ci left: 9.584256e-02	ci right 1.077905e-01	k: 1017	n:10000
KS ci ratio: 6.550165e-02	ci left: 2.549845e-01	ci right 2.723533e-01	k: 2636	n:10000
PAX8   10000 perm   2 sec   (6014 perm/sec)   p_kst 2.636000e-01   p_cons 1.017000e-01   p_joint 2.350000e-01

Joint ci ratio: 5.574148e-02	ci left: 1.926944e-01	ci right 2.037935e-01	k: 3964	n:20000
Cons ci ratio: 8.253650e-02	ci left: 9.715154e-02	ci right 1.055648e-01	k: 2026	n:20000
KS ci ratio: 4.655071e-02	ci left: 2.556181e-01	ci right 2.678512e-01	k: 5234	n:20000
PAX8   20000 perm   4 sec   (5344 perm/sec)   p_kst 2.617000e-01   p_cons 1.013000e-01   p_joint 1.982000e-01

Outputting figure to mutsig2_images.part000000000126/PAX8.4_1272_20000_0.2617_0.1013_0.1982.png
                gene_name: PAX8
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.097 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 53 percent done.
PBX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.696112e-01	ci left: 1.790635e-02	ci right 2.357766e-02	k: 206	n:10000
Cons ci ratio: 5.535413e-02	ci left: 3.246562e-01	ci right 3.432406e-01	k: 3339	n:10000
KS ci ratio: 3.880608e-01	ci left: 8.143597e-03	ci right 1.214950e-02	k: 100	n:10000
PBX2   10000 perm   2 sec   (6366 perm/sec)   p_kst 1.000000e-02   p_cons 3.339000e-01   p_joint 2.060000e-02

Joint ci ratio: 1.863283e-01	ci left: 1.963004e-02	ci right 2.371068e-02	k: 432	n:20000
Cons ci ratio: 3.904032e-02	ci left: 3.285575e-01	ci right 3.416904e-01	k: 6702	n:20000
KS ci ratio: 2.658944e-01	ci left: 9.320579e-03	ci right 1.222429e-02	k: 214	n:20000
PBX2   20000 perm   4 sec   (5663 perm/sec)   p_kst 1.070000e-02   p_cons 3.351000e-01   p_joint 2.160000e-02

Joint ci ratio: 1.491714e-01	ci left: 2.081941e-02	ci right 2.420727e-02	k: 674	n:30000
Cons ci ratio: 3.197309e-02	ci left: 3.284302e-01	ci right 3.391353e-01	k: 10013	n:30000
KS ci ratio: 2.200541e-01	ci left: 9.314470e-03	ci right 1.164846e-02	k: 313	n:30000
PBX2   30000 perm   6 sec   (5396 perm/sec)   p_kst 1.043333e-02   p_cons 3.337667e-01   p_joint 2.246667e-02

Joint ci ratio: 1.057670e-01	ci left: 3.144137e-02	ci right 3.497682e-02	k: 1327	n:40000
Cons ci ratio: 2.770508e-02	ci left: 3.289044e-01	ci right 3.381698e-01	k: 13341	n:40000
KS ci ratio: 1.895841e-01	ci left: 9.571908e-03	ci right 1.160009e-02	k: 422	n:40000
PBX2   40000 perm   8 sec   (5206 perm/sec)   p_kst 1.055000e-02   p_cons 3.335250e-01   p_joint 3.317500e-02

Joint ci ratio: 1.307472e-01	ci left: 1.650422e-02	ci right 1.883226e-02	k: 882	n:50000
Cons ci ratio: 2.542547e-02	ci left: 3.181043e-01	ci right 3.263164e-01	k: 16110	n:50000
KS ci ratio: 1.677749e-01	ci left: 9.893343e-03	ci right 1.172412e-02	k: 539	n:50000
PBX2   50000 perm   10 sec   (5070 perm/sec)   p_kst 1.078000e-02   p_cons 3.222000e-01   p_joint 1.764000e-02

Joint ci ratio: 1.160859e-01	ci left: 1.756631e-02	ci right 1.974726e-02	k: 1118	n:60000
Cons ci ratio: 2.316438e-02	ci left: 3.193251e-01	ci right 3.268254e-01	k: 19384	n:60000
KS ci ratio: 1.536372e-01	ci left: 9.908188e-03	ci right 1.157298e-02	k: 643	n:60000
PBX2   60000 perm   12 sec   (4956 perm/sec)   p_kst 1.071667e-02   p_cons 3.230667e-01   p_joint 1.863333e-02

Joint ci ratio: 1.071200e-01	ci left: 1.776497e-02	ci right 1.978948e-02	k: 1313	n:70000
Cons ci ratio: 2.144243e-02	ci left: 3.196786e-01	ci right 3.266218e-01	k: 22620	n:70000
KS ci ratio: 1.417961e-01	ci left: 1.003371e-02	ci right 1.157867e-02	k: 755	n:70000
PBX2   70000 perm   14 sec   (4849 perm/sec)   p_kst 1.078571e-02   p_cons 3.231429e-01   p_joint 1.875714e-02

Joint ci ratio: 1.003282e-01	ci left: 1.778473e-02	ci right 1.967540e-02	k: 1497	n:80000
Cons ci ratio: 2.006304e-02	ci left: 3.197847e-01	ci right 3.262781e-01	k: 25842	n:80000
KS ci ratio: 1.328716e-01	ci left: 1.004694e-02	ci right 1.148887e-02	k: 860	n:80000
PBX2   80000 perm   17 sec   (4753 perm/sec)   p_kst 1.075000e-02   p_cons 3.230250e-01   p_joint 1.871250e-02

Joint ci ratio: 9.436948e-02	ci left: 1.792265e-02	ci right 1.970856e-02	k: 1692	n:90000
Cons ci ratio: 1.886976e-02	ci left: 3.210313e-01	ci right 3.271578e-01	k: 29168	n:90000
KS ci ratio: 1.259729e-01	ci left: 9.973486e-03	ci right 1.132500e-02	k: 957	n:90000
PBX2   90000 perm   19 sec   (4664 perm/sec)   p_kst 1.063333e-02   p_cons 3.240889e-01   p_joint 1.880000e-02

Joint ci ratio: 8.977301e-02	ci left: 1.786939e-02	ci right 1.955869e-02	k: 1870	n:100000
Cons ci ratio: 1.789448e-02	ci left: 3.213589e-01	ci right 3.271713e-01	k: 32426	n:100000
KS ci ratio: 1.197614e-01	ci left: 9.964795e-03	ci right 1.124383e-02	k: 1059	n:100000
PBX2   100000 perm   22 sec   (4577 perm/sec)   p_kst 1.059000e-02   p_cons 3.242600e-01   p_joint 1.870000e-02

Joint ci ratio: 9.734599e-02	ci left: 1.381960e-02	ci right 1.524253e-02	k: 1597	n:110000
Cons ci ratio: 1.706055e-02	ci left: 3.215247e-01	ci right 3.270664e-01	k: 35672	n:110000
KS ci ratio: 1.141386e-01	ci left: 1.000320e-02	ci right 1.122281e-02	k: 1166	n:110000
PBX2   110000 perm   25 sec   (4487 perm/sec)   p_kst 1.060000e-02   p_cons 3.242909e-01   p_joint 1.451818e-02

Joint ci ratio: 9.275121e-02	ci left: 1.398594e-02	ci right 1.535433e-02	k: 1759	n:120000
Cons ci ratio: 1.634729e-02	ci left: 3.212940e-01	ci right 3.265979e-01	k: 38873	n:120000
KS ci ratio: 1.085532e-01	ci left: 1.016611e-02	ci right 1.134105e-02	k: 1289	n:120000
PBX2   120000 perm   27 sec   (4393 perm/sec)   p_kst 1.074167e-02   p_cons 3.239417e-01   p_joint 1.465833e-02

Joint ci ratio: 8.919959e-02	ci left: 1.398507e-02	ci right 1.529825e-02	k: 1902	n:130000
Cons ci ratio: 1.570225e-02	ci left: 3.215021e-01	ci right 3.265980e-01	k: 42126	n:130000
KS ci ratio: 1.045026e-01	ci left: 1.014780e-02	ci right 1.127418e-02	k: 1391	n:130000
PBX2   130000 perm   30 sec   (4310 perm/sec)   p_kst 1.070000e-02   p_cons 3.240462e-01   p_joint 1.463077e-02

Joint ci ratio: 8.594180e-02	ci left: 1.401315e-02	ci right 1.527849e-02	k: 2049	n:140000
Cons ci ratio: 1.514156e-02	ci left: 3.212920e-01	ci right 3.262010e-01	k: 45324	n:140000
KS ci ratio: 1.010794e-01	ci left: 1.009103e-02	ci right 1.117224e-02	k: 1487	n:140000
PBX2   140000 perm   33 sec   (4232 perm/sec)   p_kst 1.062143e-02   p_cons 3.237429e-01   p_joint 1.463571e-02

Joint ci ratio: 8.299756e-02	ci left: 1.404478e-02	ci right 1.526742e-02	k: 2197	n:150000
Cons ci ratio: 1.463427e-02	ci left: 3.211926e-01	ci right 3.259343e-01	k: 48534	n:150000
KS ci ratio: 9.729139e-02	ci left: 1.018548e-02	ci right 1.123357e-02	k: 1605	n:150000
PBX2   150000 perm   36 sec   (4162 perm/sec)   p_kst 1.070000e-02   p_cons 3.235600e-01   p_joint 1.464667e-02

Outputting figure to mutsig2_images.part000000000126/PBX2.4_1329_150000_0.0107_0.32356_0.014647.png
                gene_name: PBX2
               theta_stop: 0.097 
                    nperm: 150000 
                     p_ks: 0.011 
        ci_ks_bounds_left: 0.010 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.015 
     ci_joint_bounds_left: 0.014 
    ci_joint_bounds_right: 0.015 

Current progress: 54 percent done.
PCDH18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.484493e-02	ci left: 7.044263e-01	ci right 7.222493e-01	k: 7134	n:10000
Cons ci ratio: 1.307777e-02	ci left: 8.938505e-01	ci right 9.057154e-01	k: 8999	n:10000
KS ci ratio: 3.847961e-02	ci left: 4.993504e-01	ci right 5.190443e-01	k: 5092	n:10000
PCDH18   10000 perm   2 sec   (5447 perm/sec)   p_kst 5.092000e-01   p_cons 8.999000e-01   p_joint 7.134000e-01

Outputting figure to mutsig2_images.part000000000126/PCDH18.4_3424_10000_0.5092_0.8999_0.7134.png
                gene_name: PCDH18
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 56 percent done.
PCDH19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.193658e-02	ci left: 5.913239e-01	ci right 6.106172e-01	k: 6010	n:10000
Cons ci ratio: 4.685049e-02	ci left: 4.020311e-01	ci right 4.214204e-01	k: 4117	n:10000
KS ci ratio: 4.021046e-02	ci left: 4.773583e-01	ci right 4.970491e-01	k: 4872	n:10000
PCDH19   10000 perm   2 sec   (5056 perm/sec)   p_kst 4.872000e-01   p_cons 4.117000e-01   p_joint 6.010000e-01

Outputting figure to mutsig2_images.part000000000126/PCDH19.4_3471_10000_0.4872_0.4117_0.601.png
                gene_name: PCDH19
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 58 percent done.
PCDHA10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.491338e-02	ci left: 4.225613e-01	ci right 4.420781e-01	k: 4323	n:10000
Cons ci ratio: 7.413363e-02	ci left: 2.103351e-01	ci right 2.266292e-01	k: 2184	n:10000
KS ci ratio: 4.701526e-02	ci left: 4.003376e-01	ci right 4.197148e-01	k: 4100	n:10000
PCDHA10   10000 perm   2 sec   (5862 perm/sec)   p_kst 4.100000e-01   p_cons 2.184000e-01   p_joint 4.323000e-01

Outputting figure to mutsig2_images.part000000000126/PCDHA10.4_3008_10000_0.41_0.2184_0.4323.png
                gene_name: PCDHA10
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 60 percent done.
PCDHA11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.299014e-02	ci left: 4.441065e-01	ci right 4.637203e-01	k: 4539	n:10000
Cons ci ratio: 1.315740e-02	ci left: 8.927222e-01	ci right 9.046444e-01	k: 8988	n:10000
KS ci ratio: 7.380955e-02	ci left: 2.118147e-01	ci right 2.281487e-01	k: 2199	n:10000
PCDHA11   10000 perm   2 sec   (5365 perm/sec)   p_kst 2.199000e-01   p_cons 8.988000e-01   p_joint 4.539000e-01

Outputting figure to mutsig2_images.part000000000126/PCDHA11.4_2907_10000_0.2199_0.8988_0.4539.png
                gene_name: PCDHA11
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 61 percent done.
PCDHA12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.779148e-02	ci left: 3.924695e-01	ci right 4.117875e-01	k: 4021	n:10000
Cons ci ratio: 7.586907e-02	ci left: 2.026437e-01	ci right 2.187252e-01	k: 2106	n:10000
KS ci ratio: 2.025994e-02	ci left: 7.810721e-01	ci right 7.971591e-01	k: 7892	n:10000
PCDHA12   10000 perm   2 sec   (5366 perm/sec)   p_kst 7.892000e-01   p_cons 2.106000e-01   p_joint 4.021000e-01

Outputting figure to mutsig2_images.part000000000126/PCDHA12.4_2852_10000_0.7892_0.2106_0.4021.png
                gene_name: PCDHA12
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 63 percent done.
PARP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.116072e-02	ci left: 2.244469e-01	ci right 2.411090e-01	k: 2327	n:10000
Cons ci ratio: 1.300512e-02	ci left: 8.948764e-01	ci right 9.066889e-01	k: 9009	n:10000
KS ci ratio: 1.093867e-01	ci left: 1.075413e-01	ci right 1.200846e-01	k: 1137	n:10000
PARP1   10000 perm   2 sec   (5587 perm/sec)   p_kst 1.137000e-01   p_cons 9.009000e-01   p_joint 2.327000e-01

Joint ci ratio: 4.902281e-02	ci left: 2.362754e-01	ci right 2.481996e-01	k: 4844	n:20000
Cons ci ratio: 9.353373e-03	ci left: 8.935189e-01	ci right 9.019650e-01	k: 17956	n:20000
KS ci ratio: 7.769665e-02	ci left: 1.084964e-01	ci right 1.173165e-01	k: 2257	n:20000
PARP1   20000 perm   4 sec   (4983 perm/sec)   p_kst 1.128500e-01   p_cons 8.978000e-01   p_joint 2.422000e-01

Outputting figure to mutsig2_images.part000000000126/PARP1.3_3137_20000_0.11285_0.8978_0.2422.png
                gene_name: PARP1
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 65 percent done.
PARP14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.324248e-02	ci left: 1.738909e-01	ci right 1.890951e-01	k: 1814	n:10000
Cons ci ratio: 4.940915e-02	ci left: 3.766417e-01	ci right 3.958246e-01	k: 3862	n:10000
KS ci ratio: 1.017199e-01	ci left: 1.226845e-01	ci right 1.359322e-01	k: 1292	n:10000
PARP14   10000 perm   2 sec   (4725 perm/sec)   p_kst 1.292000e-01   p_cons 3.862000e-01   p_joint 1.814000e-01

Joint ci ratio: 5.829392e-02	ci left: 1.789971e-01	ci right 1.897949e-01	k: 3687	n:20000
Cons ci ratio: 3.492259e-02	ci left: 3.796935e-01	ci right 3.932396e-01	k: 7729	n:20000
KS ci ratio: 7.343592e-02	ci left: 1.201019e-01	ci right 1.293076e-01	k: 2493	n:20000
PARP14   20000 perm   5 sec   (4259 perm/sec)   p_kst 1.246500e-01   p_cons 3.864500e-01   p_joint 1.843500e-01

Outputting figure to mutsig2_images.part000000000126/PARP14.3_5474_20000_0.12465_0.38645_0.18435.png
                gene_name: PARP14
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 67 percent done.
PASD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.646388e-02	ci left: 6.777071e-01	ci right 6.959839e-01	k: 6869	n:10000
Cons ci ratio: 3.087503e-02	ci left: 6.074897e-01	ci right 6.266420e-01	k: 6171	n:10000
KS ci ratio: 4.240530e-02	ci left: 4.508931e-01	ci right 4.705298e-01	k: 4607	n:10000
PASD1   10000 perm   2 sec   (5852 perm/sec)   p_kst 4.607000e-01   p_cons 6.171000e-01   p_joint 6.869000e-01

Outputting figure to mutsig2_images.part000000000126/PASD1.3_2382_10000_0.4607_0.6171_0.6869.png
                gene_name: PASD1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 68 percent done.
PATZ1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.583820e-02	ci left: 8.527383e-01	ci right 8.664514e-01	k: 8597	n:10000
Cons ci ratio: 3.299920e-02	ci left: 5.754698e-01	ci right 5.948805e-01	k: 5852	n:10000
KS ci ratio: 3.336753e-02	ci left: 5.700537e-01	ci right 5.894998e-01	k: 5798	n:10000
PATZ1   10000 perm   2 sec   (5892 perm/sec)   p_kst 5.798000e-01   p_cons 5.852000e-01   p_joint 8.597000e-01

Outputting figure to mutsig2_images.part000000000126/PATZ1.3_2367_10000_0.5798_0.5852_0.8597.png
                gene_name: PATZ1
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 70 percent done.
PAX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.101379e-02	ci left: 9.216228e-01	ci right 9.319269e-01	k: 9269	n:10000
KS ci ratio: 1.616482e-02	ci left: 8.476398e-01	ci right 8.615529e-01	k: 8547	n:10000
PAX2   10000 perm   2 sec   (6332 perm/sec)   p_kst 8.547000e-01   p_cons 9.269000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000126/PAX2.3_1449_10000_0.8547_0.9269_1.png
                gene_name: PAX2
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
PAX5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.690941e-02	ci left: 5.201603e-01	ci right 5.398222e-01	k: 5300	n:10000
Cons ci ratio: 2.803301e-02	ci left: 6.522301e-01	ci right 6.708757e-01	k: 6616	n:10000
KS ci ratio: 4.329487e-02	ci left: 4.406142e-01	ci right 4.602147e-01	k: 4504	n:10000
PAX5   10000 perm   1 sec   (6939 perm/sec)   p_kst 4.504000e-01   p_cons 6.616000e-01   p_joint 5.300000e-01

Outputting figure to mutsig2_images.part000000000126/PAX5.3_1216_10000_0.4504_0.6616_0.53.png
                gene_name: PAX5
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 74 percent done.
PAX7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.432174e-02	ci left: 5.562179e-01	ci right 5.757437e-01	k: 5660	n:10000
Cons ci ratio: 1.360814e-02	ci left: 8.862643e-01	ci right 8.985060e-01	k: 8925	n:10000
KS ci ratio: 4.459463e-02	ci left: 4.260512e-01	ci right 4.455862e-01	k: 4358	n:10000
PAX7   10000 perm   2 sec   (6556 perm/sec)   p_kst 4.358000e-01   p_cons 8.925000e-01   p_joint 5.660000e-01

Outputting figure to mutsig2_images.part000000000126/PAX7.3_1715_10000_0.4358_0.8925_0.566.png
                gene_name: PAX7
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 75 percent done.
PCCA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.934331e-02	ci left: 4.882520e-01	ci right 5.079491e-01	k: 4981	n:10000
KS ci ratio: 2.616291e-02	ci left: 6.826450e-01	ci right 7.008432e-01	k: 6918	n:10000
PCCA   10000 perm   2 sec   (5848 perm/sec)   p_kst 6.918000e-01   p_cons 4.981000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000126/PCCA.3_2283_10000_0.6918_0.4981_1.png
                gene_name: PCCA
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
PAQR5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.617518e-02	ci left: 6.824434e-01	ci right 7.006449e-01	k: 6916	n:10000
Cons ci ratio: 2.883840e-02	ci left: 6.393519e-01	ci right 6.581613e-01	k: 6488	n:10000
KS ci ratio: 7.092251e-02	ci left: 2.256317e-01	ci right 2.423235e-01	k: 2339	n:10000
PAQR5   10000 perm   1 sec   (6715 perm/sec)   p_kst 2.339000e-01   p_cons 6.488000e-01   p_joint 6.916000e-01

Outputting figure to mutsig2_images.part000000000126/PAQR5.2_1021_10000_0.2339_0.6488_0.6916.png
                gene_name: PAQR5
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 79 percent done.
PARL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.928182e-02	ci left: 7.972992e-01	ci right 8.129226e-01	k: 8052	n:10000
KS ci ratio: 1.454701e-02	ci left: 8.724474e-01	ci right 8.853309e-01	k: 8790	n:10000
PARL   10000 perm   1 sec   (6670 perm/sec)   p_kst 8.790000e-01   p_cons 8.052000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000126/PARL.2_1180_10000_0.879_0.8052_1.png
                gene_name: PARL
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
PARM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.028991e-03	ci left: 9.812374e-01	ci right 9.862751e-01	k: 9839	n:10000
Cons ci ratio: 3.054934e-02	ci left: 6.125124e-01	ci right 6.316164e-01	k: 6221	n:10000
KS ci ratio: 5.340906e-02	ci left: 3.406464e-01	ci right 3.594411e-01	k: 3500	n:10000
PARM1   10000 perm   1 sec   (6785 perm/sec)   p_kst 3.500000e-01   p_cons 6.221000e-01   p_joint 9.839000e-01

Outputting figure to mutsig2_images.part000000000126/PARM1.2_949_10000_0.35_0.6221_0.9839.png
                gene_name: PARM1
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 82 percent done.
PARP11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.404356e-02	ci left: 8.799154e-01	ci right 8.924587e-01	k: 8863	n:10000
Cons ci ratio: 5.241476e-02	ci left: 3.491925e-01	ci right 3.680899e-01	k: 3586	n:10000
KS ci ratio: 2.164788e-02	ci left: 7.578789e-01	ci right 7.745658e-01	k: 7663	n:10000
PARP11   10000 perm   1 sec   (6856 perm/sec)   p_kst 7.663000e-01   p_cons 3.586000e-01   p_joint 8.863000e-01

Outputting figure to mutsig2_images.part000000000126/PARP11.2_1049_10000_0.7663_0.3586_0.8863.png
                gene_name: PARP11
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 84 percent done.
PARP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.651176e-02	ci left: 2.491493e-01	ci right 2.663920e-01	k: 2577	n:10000
Cons ci ratio: 9.059204e-02	ci left: 1.505090e-01	ci right 1.648910e-01	k: 1576	n:10000
KS ci ratio: 6.621760e-02	ci left: 2.508304e-01	ci right 2.681099e-01	k: 2594	n:10000
PARP2   10000 perm   2 sec   (6614 perm/sec)   p_kst 2.594000e-01   p_cons 1.576000e-01   p_joint 2.577000e-01

Outputting figure to mutsig2_images.part000000000126/PARP2.2_1816_10000_0.2594_0.1576_0.2577.png
                gene_name: PARP2
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 86 percent done.
PARVG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.639408e-02	ci left: 5.271675e-01	ci right 5.468110e-01	k: 5370	n:10000
Cons ci ratio: 1.895557e-02	ci left: 8.026788e-01	ci right 8.181399e-01	k: 8105	n:10000
KS ci ratio: 6.342511e-02	ci left: 2.675518e-01	ci right 2.851786e-01	k: 2763	n:10000
PARVG   10000 perm   1 sec   (6793 perm/sec)   p_kst 2.763000e-01   p_cons 8.105000e-01   p_joint 5.370000e-01

Outputting figure to mutsig2_images.part000000000126/PARVG.2_1044_10000_0.2763_0.8105_0.537.png
                gene_name: PARVG
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 88 percent done.
PATE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.659824e-02	ci left: 8.408121e-01	ci right 8.549846e-01	k: 8480	n:10000
Cons ci ratio: 5.627496e-02	ci left: 3.174100e-01	ci right 3.358911e-01	k: 3266	n:10000
KS ci ratio: 3.985010e-02	ci left: 4.818551e-01	ci right 5.015497e-01	k: 4917	n:10000
PATE1   10000 perm   1 sec   (6990 perm/sec)   p_kst 4.917000e-01   p_cons 3.266000e-01   p_joint 8.480000e-01

Outputting figure to mutsig2_images.part000000000126/PATE1.2_401_10000_0.4917_0.3266_0.848.png
                gene_name: PATE1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 89 percent done.
PAX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.663749e-03	ci left: 9.685759e-01	ci right 9.751453e-01	k: 9720	n:10000
Cons ci ratio: 2.298773e-02	ci left: 7.354271e-01	ci right 7.526306e-01	k: 7441	n:10000
KS ci ratio: 3.919412e-02	ci left: 4.901514e-01	ci right 5.098486e-01	k: 5000	n:10000
PAX1   10000 perm   2 sec   (6435 perm/sec)   p_kst 5.000000e-01   p_cons 7.441000e-01   p_joint 9.720000e-01

Outputting figure to mutsig2_images.part000000000126/PAX1.2_1625_10000_0.5_0.7441_0.972.png
                gene_name: PAX1
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 91 percent done.
PAX9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.930639e-02	ci left: 7.968933e-01	ci right 8.125288e-01	k: 8048	n:10000
Cons ci ratio: 5.626217e-02	ci left: 3.175092e-01	ci right 3.359918e-01	k: 3267	n:10000
KS ci ratio: 3.401542e-02	ci left: 5.606285e-01	ci right 5.801305e-01	k: 5704	n:10000
PAX9   10000 perm   1 sec   (6669 perm/sec)   p_kst 5.704000e-01   p_cons 3.267000e-01   p_joint 8.048000e-01

Outputting figure to mutsig2_images.part000000000126/PAX9.2_1042_10000_0.5704_0.3267_0.8048.png
                gene_name: PAX9
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 93 percent done.
PBLD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.399478e-02	ci left: 8.806319e-01	ci right 8.931418e-01	k: 8870	n:10000
KS ci ratio: 2.777680e-02	ci left: 6.563567e-01	ci right 6.749467e-01	k: 6657	n:10000
PBLD   10000 perm   1 sec   (6809 perm/sec)   p_kst 6.657000e-01   p_cons 8.870000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000126/PBLD.2_992_10000_0.6657_0.887_1.png
                gene_name: PBLD
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
PBX3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.070558e-02	ci left: 2.267179e-01	ci right 2.434367e-01	k: 2350	n:10000
Cons ci ratio: 4.535527e-02	ci left: 4.177760e-01	ci right 4.372662e-01	k: 4275	n:10000
KS ci ratio: 8.624746e-02	ci left: 1.637654e-01	ci right 1.786266e-01	k: 1711	n:10000
PBX3   10000 perm   2 sec   (6626 perm/sec)   p_kst 1.711000e-01   p_cons 4.275000e-01   p_joint 2.350000e-01

Outputting figure to mutsig2_images.part000000000126/PBX3.2_1341_10000_0.1711_0.4275_0.235.png
                gene_name: PBX3
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 96 percent done.
PC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.159281e-01	ci left: 9.662172e-02	ci right 1.086109e-01	k: 1025	n:10000
Cons ci ratio: 5.826473e-02	ci left: 3.024292e-01	ci right 3.206807e-01	k: 3115	n:10000
KS ci ratio: 2.750894e-01	ci left: 1.716007e-02	ci right 2.272454e-02	k: 198	n:10000
PC   10000 perm   2 sec   (5560 perm/sec)   p_kst 1.980000e-02   p_cons 3.115000e-01   p_joint 1.025000e-01

Joint ci ratio: 4.265528e-02	ci left: 2.905231e-01	ci right 3.032360e-01	k: 5937	n:20000
Cons ci ratio: 4.181732e-02	ci left: 2.988217e-01	ci right 3.116350e-01	k: 6104	n:20000
KS ci ratio: 1.945223e-01	ci left: 1.796192e-02	ci right 2.187941e-02	k: 397	n:20000
PC   20000 perm   4 sec   (4988 perm/sec)   p_kst 1.985000e-02   p_cons 3.052000e-01   p_joint 2.968500e-01

Joint ci ratio: 6.426585e-02	ci left: 1.067763e-01	ci right 1.138993e-01	k: 3309	n:30000
Cons ci ratio: 3.331788e-02	ci left: 3.104418e-01	ci right 3.209939e-01	k: 9471	n:30000
KS ci ratio: 1.606216e-01	ci left: 1.790127e-02	ci right 2.105943e-02	k: 583	n:30000
PC   30000 perm   6 sec   (4771 perm/sec)   p_kst 1.943333e-02   p_cons 3.157000e-01   p_joint 1.103000e-01

Joint ci ratio: 3.024519e-02	ci left: 2.912551e-01	ci right 3.002245e-01	k: 11829	n:40000
Cons ci ratio: 2.899889e-02	ci left: 3.090047e-01	ci right 3.181224e-01	k: 12542	n:40000
KS ci ratio: 1.408343e-01	ci left: 1.766045e-02	ci right 2.036002e-02	k: 759	n:40000
PC   40000 perm   9 sec   (4631 perm/sec)   p_kst 1.897500e-02   p_cons 3.135500e-01   p_joint 2.957250e-01

Joint ci ratio: 3.281613e-02	ci left: 2.183635e-01	ci right 2.256688e-01	k: 11100	n:50000
Cons ci ratio: 2.602896e-02	ci left: 3.079798e-01	ci right 3.161220e-01	k: 15602	n:50000
KS ci ratio: 1.261017e-01	ci left: 1.776317e-02	ci right 2.017313e-02	k: 947	n:50000
PC   50000 perm   11 sec   (4514 perm/sec)   p_kst 1.894000e-02   p_cons 3.120400e-01   p_joint 2.220000e-01

Joint ci ratio: 2.423085e-02	ci left: 3.000217e-01	ci right 3.073973e-01	k: 18222	n:60000
Cons ci ratio: 2.380784e-02	ci left: 3.074963e-01	ci right 3.149220e-01	k: 18672	n:60000
KS ci ratio: 1.146840e-01	ci left: 1.800356e-02	ci right 2.020997e-02	k: 1145	n:60000
PC   60000 perm   14 sec   (4350 perm/sec)   p_kst 1.908333e-02   p_cons 3.112000e-01   p_joint 3.037000e-01

Joint ci ratio: 2.697327e-02	ci left: 2.286496e-01	ci right 2.349155e-01	k: 16224	n:70000
Cons ci ratio: 2.208089e-02	ci left: 3.070161e-01	ci right 3.138853e-01	k: 21731	n:70000
KS ci ratio: 1.056544e-01	ci left: 1.826582e-02	ci right 2.031716e-02	k: 1349	n:70000
PC   70000 perm   16 sec   (4283 perm/sec)   p_kst 1.927143e-02   p_cons 3.104429e-01   p_joint 2.317714e-01

Joint ci ratio: 2.518158e-02	ci left: 2.295514e-01	ci right 2.354180e-01	k: 18598	n:80000
Cons ci ratio: 2.061960e-02	ci left: 3.079675e-01	ci right 3.143962e-01	k: 24894	n:80000
KS ci ratio: 9.843644e-02	ci left: 1.847984e-02	ci right 2.040523e-02	k: 1554	n:80000
PC   80000 perm   19 sec   (4214 perm/sec)   p_kst 1.942500e-02   p_cons 3.111750e-01   p_joint 2.324750e-01

Outputting figure to mutsig2_images.part000000000126/PC.2_3617_80000_0.019425_0.31117_0.23247.png
                gene_name: PC
               theta_stop: 0.098 
                    nperm: 80000 
                     p_ks: 0.019 
        ci_ks_bounds_left: 0.018 
       ci_ks_bounds_right: 0.020 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 98 percent done.
PCDH12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.299120e-02	ci left: 1.747761e-01	ci right 1.900094e-01	k: 1823	n:10000
Cons ci ratio: 1.191234e-01	ci left: 9.185115e-02	ci right 1.035844e-01	k: 976	n:10000
KS ci ratio: 4.296414e-02	ci left: 4.444059e-01	ci right 4.640208e-01	k: 4542	n:10000
PCDH12   10000 perm   2 sec   (5499 perm/sec)   p_kst 4.542000e-01   p_cons 9.760000e-02   p_joint 1.823000e-01

Joint ci ratio: 6.521690e-02	ci left: 1.479873e-01	ci right 1.580138e-01	k: 3059	n:20000
Cons ci ratio: 8.329303e-02	ci left: 9.553217e-02	ci right 1.038846e-01	k: 1993	n:20000
KS ci ratio: 3.053952e-02	ci left: 4.447354e-01	ci right 4.585787e-01	k: 9033	n:20000
PCDH12   20000 perm   4 sec   (4930 perm/sec)   p_kst 4.516500e-01   p_cons 9.965000e-02   p_joint 1.529500e-01

Outputting figure to mutsig2_images.part000000000126/PCDH12.2_3571_20000_0.45165_0.09965_0.15295.png
                gene_name: PCDH12
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.100 
      ci_cons_bounds_left: 0.096 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000126
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 126 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1701>
Subject: Job 8004368: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1701>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000127> was used as the working directory.
Started at Sun Nov 11 15:12:07 2012
Results reported at Sun Nov 11 15:53:02 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000127.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000127.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 127  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000127.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   2537.46 sec.
    Max Memory :      4778 MB
    Max Swap   :      7289 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
127
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 127
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 127: processing genes 11400 - 11490
Calculating significance of each gene.
Using projection method.
11400	PCDHA3	9.842636e-01
11401	PCDHA4	7.407332e-01
11402	PCDHA5	9.638257e-01
11403	PCDHA6	9.490093e-01
11404	PCDHA7	1.007703e-01
11405	PCDHA8	1
11406	PCDHA9	6.589534e-01
11407	PCDHAC1	9.340239e-01
11408	PCDHAC2	8.766645e-01
11409	PCDHB1	4.809509e-01
11410	PCDHB10	3.663021e-04
11411	PCDHB11	1.343351e-01
11412	PCDHB12	5.562480e-01
11413	PCDHB13	1
11414	PCDHB14	4.884802e-01
11415	PCDHB15	5.460010e-01
11416	PCDHB16	9.131530e-01
11417	PCDHB2	5.231910e-02
11418	PCDHB3	3.331902e-01
11419	PCDHB4	4.295217e-01
11420	PCDHB5	1
11421	PCDHB6	3.008865e-01
11422	PCDHB7	1
11423	PCDHB8	3.276809e-02
11424	PCDHB9	6.545191e-01
11425	PCDHGA1	1.807118e-01
11426	PCDHGA10	1
11427	PCDHGA11	3.922006e-01
11428	PCDHGA12	9.344123e-01
11429	PCDHGA2	6.776576e-01
11430	PCDHGA3	9.436358e-01
11431	PCDHGA4	1
11432	PCDHGA5	1
11433	PCDHGA6	1
11434	PCDHGA7	7.586661e-01
11435	PCDHGA8	2.313185e-01
11436	PCDHGA9	9.486569e-01
11437	PCDHGB1	1
11438	PCDHGB2	1.355577e-02
11439	PCDHGB3	9.589859e-01
11440	PCDHGB4	9.213518e-01
11441	PCDHGB5	9.127988e-02
11442	PCDHGB6	9.502662e-01
11443	PCDHGB7	9.416304e-01
11444	PCDHGC3	1
11445	PCDHGC4	1
11446	PCDHGC5	9.374212e-01
11447	PCDP1	3.334649e-01
11448	PCF11	9.926475e-01
11449	PCGF1	1
11450	PCGF2	1
11451	PCGF3	1
11452	PCGF5	6.340787e-01
11453	PCGF6	2.952585e-01
11454	PCID2	5.394765e-01
11455	PCIF1	7.136393e-01
11456	PCK1	1
11457	PCK2	8.478311e-01
11458	PCLO	1
11459	PCM1	9.134632e-01
11460	PCMT1	1
11461	PCMTD1	2.916925e-01
11462	PCMTD2	4.096570e-01
11463	PCNA	1
11464	PCNP	1
11465	PCNT	9.999984e-01
11466	PCNX	9.967370e-01
11467	PCNXL2	7.129958e-01
11468	PCNXL3	9.958616e-01
11469	PCOLCE	4.858170e-01
11470	PCOLCE2	1.643372e-01
11471	PCOTH	1
11472	PCP2	1
11473	PCP4	2.446565e-01
11474	PCP4L1	1
11475	PCSK1	1.665291e-01
11476	PCSK2	9.110832e-01
11477	PCSK4	1
11478	PCSK5	1
11479	PCSK6	8.573670e-01
11480	PCSK7	9.384277e-01
11481	PCSK9	3.301891e-01
11482	PCTP	1
11483	PCYOX1	3.741013e-01
11484	PCYOX1L	1
11485	PCYT1A	1
11486	PCYT1B	4.633182e-01
11487	PCYT2	1
11488	PDAP1	1
11489	PDC	1
11490	PDCD1	2.712157e-01
Done

Running MutSig 2:
Scatter job 127: processing genes 11400 - 11490
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
PCLO
Processing conservation and coverage...
64% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.640474e-02	ci left: 8.438687e-01	ci right 8.579262e-01	k: 8510	n:10000
Cons ci ratio: 3.539588e-02	ci left: 5.409873e-01	ci right 5.605831e-01	k: 5508	n:10000
KS ci ratio: 1.757859e-02	ci left: 8.251362e-01	ci right 8.398695e-01	k: 8326	n:10000
PCLO   10000 perm   4 sec   (2586 perm/sec)   p_kst 8.326000e-01   p_cons 5.508000e-01   p_joint 8.510000e-01

Outputting figure to mutsig2_images.part000000000127/PCLO.40_15546_10000_0.8326_0.5508_0.851.png
                gene_name: PCLO
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 1 percent done.
PCDHB10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.300507e-03	ci left: 9.981617e-01	ci right 9.995204e-01	k: 9990	n:10000
KS ci ratio: 2.298170e-02	ci left: 7.355281e-01	ci right 7.527294e-01	k: 7442	n:10000
PCDHB10   10000 perm   2 sec   (5131 perm/sec)   p_kst 7.442000e-01   p_cons 9.990000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000127/PCDHB10.13_2407_10000_0.7442_0.999_1.png
                gene_name: PCDHB10
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 3 percent done.
PCNX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.926208e-02	ci left: 2.341256e-01	ci right 2.510246e-01	k: 2425	n:10000
Cons ci ratio: 7.221246e-02	ci left: 2.193138e-01	ci right 2.358452e-01	k: 2275	n:10000
KS ci ratio: 7.306490e-02	ci left: 2.152677e-01	ci right 2.316936e-01	k: 2234	n:10000
PCNX   10000 perm   3 sec   (3673 perm/sec)   p_kst 2.234000e-01   p_cons 2.275000e-01   p_joint 2.425000e-01

Outputting figure to mutsig2_images.part000000000127/PCNX.12_7170_10000_0.2234_0.2275_0.2425.png
                gene_name: PCNX
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 4 percent done.
PCDHA7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.251022e-03	ci left: 9.633100e-01	ci right 9.704146e-01	k: 9670	n:10000
KS ci ratio: 2.926357e-02	ci left: 6.326140e-01	ci right 6.515032e-01	k: 6421	n:10000
PCDHA7   10000 perm   2 sec   (4578 perm/sec)   p_kst 6.421000e-01   p_cons 9.670000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000127/PCDHA7.11_2843_10000_0.6421_0.967_1.png
                gene_name: PCDHA7
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 6 percent done.
PCDHB12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.019958e-02	ci left: 6.179381e-01	ci right 6.369876e-01	k: 6275	n:10000
Cons ci ratio: 3.795959e-02	ci left: 5.061517e-01	ci right 5.258389e-01	k: 5160	n:10000
KS ci ratio: 4.013812e-02	ci left: 4.782576e-01	ci right 4.979493e-01	k: 4881	n:10000
PCDHB12   10000 perm   2 sec   (4714 perm/sec)   p_kst 4.881000e-01   p_cons 5.160000e-01   p_joint 6.275000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHB12.11_2392_10000_0.4881_0.516_0.6275.png
                gene_name: PCDHB12
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 7 percent done.
PCDHB8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.209154e-01	ci left: 1.234131e-02	ci right 1.714746e-02	k: 146	n:10000
Cons ci ratio: 1.907924e-01	ci left: 3.662531e-02	ci right 4.444524e-02	k: 404	n:10000
KS ci ratio: 2.043162e-01	ci left: 3.186407e-02	ci right 3.920972e-02	k: 354	n:10000
PCDHB8   10000 perm   2 sec   (4900 perm/sec)   p_kst 3.540000e-02   p_cons 4.040000e-02   p_joint 1.460000e-02

Joint ci ratio: 1.883388e-01	ci left: 1.920075e-02	ci right 2.324013e-02	k: 423	n:20000
Cons ci ratio: 1.403283e-01	ci left: 3.490943e-02	ci right 4.022610e-02	k: 750	n:20000
KS ci ratio: 1.441613e-01	ci left: 3.307475e-02	ci right 3.826138e-02	k: 712	n:20000
PCDHB8   20000 perm   5 sec   (4421 perm/sec)   p_kst 3.560000e-02   p_cons 3.750000e-02   p_joint 2.115000e-02

Joint ci ratio: 1.350064e-01	ci left: 2.548523e-02	ci right 2.920706e-02	k: 819	n:30000
Cons ci ratio: 1.111140e-01	ci left: 3.761587e-02	ci right 4.207381e-02	k: 1194	n:30000
KS ci ratio: 1.175657e-01	ci left: 3.362884e-02	ci right 3.786168e-02	k: 1071	n:30000
PCDHB8   30000 perm   7 sec   (4236 perm/sec)   p_kst 3.570000e-02   p_cons 3.980000e-02   p_joint 2.730000e-02

Joint ci ratio: 1.461163e-01	ci left: 1.638221e-02	ci right 1.898849e-02	k: 706	n:40000
Cons ci ratio: 9.758604e-02	ci left: 3.687970e-02	ci right 4.068763e-02	k: 1550	n:40000
KS ci ratio: 1.010600e-01	ci left: 3.441514e-02	ci right 3.810258e-02	k: 1449	n:40000
PCDHB8   40000 perm   10 sec   (4121 perm/sec)   p_kst 3.622500e-02   p_cons 3.875000e-02   p_joint 1.765000e-02

Joint ci ratio: 1.453402e-01	ci left: 1.329691e-02	ci right 1.540003e-02	k: 716	n:50000
Cons ci ratio: 8.794063e-02	ci left: 3.653675e-02	ci right 3.991713e-02	k: 1910	n:50000
KS ci ratio: 9.092590e-02	ci left: 3.420806e-02	ci right 3.748612e-02	k: 1791	n:50000
PCDHB8   50000 perm   12 sec   (4032 perm/sec)   p_kst 3.582000e-02   p_cons 3.820000e-02   p_joint 1.432000e-02

Joint ci ratio: 1.486974e-01	ci left: 1.059802e-02	ci right 1.231639e-02	k: 686	n:60000
Cons ci ratio: 8.039163e-02	ci left: 3.658225e-02	ci right 3.966263e-02	k: 2286	n:60000
KS ci ratio: 8.273277e-02	ci left: 3.457254e-02	ci right 3.757255e-02	k: 2163	n:60000
PCDHB8   60000 perm   15 sec   (3938 perm/sec)   p_kst 3.605000e-02   p_cons 3.810000e-02   p_joint 1.143333e-02

Joint ci ratio: 1.126643e-01	ci left: 1.604139e-02	ci right 1.797037e-02	k: 1189	n:70000
Cons ci ratio: 7.479576e-02	ci left: 3.634314e-02	ci right 3.918106e-02	k: 2642	n:70000
KS ci ratio: 7.300582e-02	ci left: 3.811114e-02	ci right 4.101290e-02	k: 2768	n:70000
PCDHB8   70000 perm   19 sec   (3778 perm/sec)   p_kst 3.954286e-02   p_cons 3.774286e-02   p_joint 1.698571e-02

Joint ci ratio: 9.827543e-02	ci left: 1.854083e-02	ci right 2.046924e-02	k: 1559	n:80000
Cons ci ratio: 6.983989e-02	ci left: 3.656273e-02	ci right 3.922092e-02	k: 3030	n:80000
KS ci ratio: 6.826348e-02	ci left: 3.823450e-02	ci right 4.094902e-02	k: 3166	n:80000
PCDHB8   80000 perm   21 sec   (3730 perm/sec)   p_kst 3.957500e-02   p_cons 3.787500e-02   p_joint 1.948750e-02

Outputting figure to mutsig2_images.part000000000127/PCDHB8.11_2408_80000_0.039575_0.037875_0.019488.png
                gene_name: PCDHB8
               theta_stop: 0.098 
                    nperm: 80000 
                     p_ks: 0.040 
        ci_ks_bounds_left: 0.038 
       ci_ks_bounds_right: 0.041 
                   p_cons: 0.038 
      ci_cons_bounds_left: 0.037 
     ci_cons_bounds_right: 0.039 
                  p_joint: 0.019 
     ci_joint_bounds_left: 0.019 
    ci_joint_bounds_right: 0.020 

Current progress: 9 percent done.
PCNT
Processing conservation and coverage...
98% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.212332e-02	ci left: 5.885136e-01	ci right 6.078292e-01	k: 5982	n:10000
KS ci ratio: 1.194462e-02	ci left: 9.094652e-01	ci right 9.204916e-01	k: 9151	n:10000
PCNT   10000 perm   3 sec   (3302 perm/sec)   p_kst 9.151000e-01   p_cons 5.982000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000127/PCNT.11_10199_10000_0.9151_0.5982_1.png
                gene_name: PCNT
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 10 percent done.
PCDHB7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.446619e-01	ci left: 6.343206e-02	ci right 7.342113e-02	k: 683	n:10000
Cons ci ratio: 1.972249e-01	ci left: 3.424249e-02	ci right 4.182967e-02	k: 379	n:10000
KS ci ratio: 6.247168e-02	ci left: 2.735913e-01	ci right 2.913356e-01	k: 2824	n:10000
PCDHB7   10000 perm   2 sec   (4402 perm/sec)   p_kst 2.824000e-01   p_cons 3.790000e-02   p_joint 6.830000e-02

Joint ci ratio: 1.106956e-01	ci left: 5.572506e-02	ci right 6.230387e-02	k: 1179	n:20000
Cons ci ratio: 1.414078e-01	ci left: 3.437815e-02	ci right 3.965756e-02	k: 739	n:20000
KS ci ratio: 4.420709e-02	ci left: 2.759198e-01	ci right 2.884436e-01	k: 5643	n:20000
PCDHB7   20000 perm   4 sec   (4472 perm/sec)   p_kst 2.821500e-01   p_cons 3.695000e-02   p_joint 5.895000e-02

Joint ci ratio: 8.013678e-02	ci left: 7.089895e-02	ci right 7.685056e-02	k: 2215	n:30000
Cons ci ratio: 1.148701e-01	ci left: 3.521634e-02	ci right 3.954051e-02	k: 1120	n:30000
KS ci ratio: 3.618431e-02	ci left: 2.760841e-01	ci right 2.862916e-01	k: 8435	n:30000
PCDHB7   30000 perm   7 sec   (4413 perm/sec)   p_kst 2.811667e-01   p_cons 3.733333e-02   p_joint 7.383333e-02

Joint ci ratio: 4.640699e-02	ci left: 1.478507e-01	ci right 1.548999e-01	k: 6054	n:40000
Cons ci ratio: 9.858217e-02	ci left: 3.614741e-02	ci right 3.992003e-02	k: 1520	n:40000
KS ci ratio: 3.132493e-02	ci left: 2.769221e-01	ci right 2.857597e-01	k: 11253	n:40000
PCDHB7   40000 perm   9 sec   (4346 perm/sec)   p_kst 2.813250e-01   p_cons 3.800000e-02   p_joint 1.513500e-01

Outputting figure to mutsig2_images.part000000000127/PCDHB7.10_2386_40000_0.28132_0.038_0.15135.png
                gene_name: PCDHB7
               theta_stop: 0.099 
                    nperm: 40000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.038 
      ci_cons_bounds_left: 0.036 
     ci_cons_bounds_right: 0.040 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.15 

Current progress: 12 percent done.
PCDHGB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.525972e-01	ci left: 5.715872e-02	ci right 6.669845e-02	k: 618	n:10000
Cons ci ratio: 1.159911e-01	ci left: 9.652432e-02	ci right 1.085084e-01	k: 1024	n:10000
KS ci ratio: 1.540616e-01	ci left: 5.609849e-02	ci right 6.555935e-02	k: 607	n:10000
PCDHGB2   10000 perm   2 sec   (5216 perm/sec)   p_kst 6.070000e-02   p_cons 1.024000e-01   p_joint 6.180000e-02

Joint ci ratio: 1.417063e-01	ci left: 3.423328e-02	ci right 3.950247e-02	k: 736	n:20000
Cons ci ratio: 8.090291e-02	ci left: 1.007841e-01	ci right 1.093311e-01	k: 2100	n:20000
KS ci ratio: 1.083252e-01	ci left: 5.811191e-02	ci right 6.481629e-02	k: 1228	n:20000
PCDHGB2   20000 perm   4 sec   (4708 perm/sec)   p_kst 6.140000e-02   p_cons 1.050000e-01   p_joint 3.680000e-02

Joint ci ratio: 8.971188e-02	ci left: 5.714289e-02	ci right 6.254274e-02	k: 1794	n:30000
Cons ci ratio: 6.550709e-02	ci left: 1.031294e-01	ci right 1.101470e-01	k: 3198	n:30000
KS ci ratio: 8.708426e-02	ci left: 6.050498e-02	ci right 6.604663e-02	k: 1897	n:30000
PCDHGB2   30000 perm   7 sec   (4499 perm/sec)   p_kst 6.323333e-02   p_cons 1.066000e-01   p_joint 5.980000e-02

Outputting figure to mutsig2_images.part000000000127/PCDHGB2.10_2825_30000_0.063233_0.1066_0.0598.png
                gene_name: PCDHGB2
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.063 
        ci_ks_bounds_left: 0.061 
       ci_ks_bounds_right: 0.066 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.060 
     ci_joint_bounds_left: 0.057 
    ci_joint_bounds_right: 0.063 

Current progress: 13 percent done.
PCDHA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.434166e-02	ci left: 4.288434e-01	ci right 4.483924e-01	k: 4386	n:10000
Cons ci ratio: 8.358022e-02	ci left: 1.727107e-01	ci right 1.878760e-01	k: 1802	n:10000
KS ci ratio: 3.633558e-02	ci left: 5.279684e-01	ci right 5.476096e-01	k: 5378	n:10000
PCDHA3   10000 perm   2 sec   (4911 perm/sec)   p_kst 5.378000e-01   p_cons 1.802000e-01   p_joint 4.386000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHA3.9_2948_10000_0.5378_0.1802_0.4386.png
                gene_name: PCDHA3
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 14 percent done.
PCDHA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.039475e-01	ci left: 1.179914e-01	ci right 1.310282e-01	k: 1244	n:10000
Cons ci ratio: 1.667539e-02	ci left: 8.395897e-01	ci right 8.538077e-01	k: 8468	n:10000
KS ci ratio: 1.407264e-01	ci left: 6.691220e-02	ci right 7.713880e-02	k: 719	n:10000
PCDHA4   10000 perm   2 sec   (4736 perm/sec)   p_kst 7.190000e-02   p_cons 8.468000e-01   p_joint 1.244000e-01

Joint ci ratio: 6.354574e-02	ci left: 1.547465e-01	ci right 1.649526e-01	k: 3196	n:20000
Cons ci ratio: 1.191527e-02	ci left: 8.389469e-01	ci right 8.490529e-01	k: 16881	n:20000
KS ci ratio: 1.014994e-01	ci left: 6.586692e-02	ci right 7.295888e-02	k: 1387	n:20000
PCDHA4   20000 perm   5 sec   (4328 perm/sec)   p_kst 6.935000e-02   p_cons 8.440500e-01   p_joint 1.598000e-01

Joint ci ratio: 5.367834e-02	ci left: 1.468668e-01	ci right 1.550010e-01	k: 4527	n:30000
Cons ci ratio: 9.735369e-03	ci left: 8.397093e-01	ci right 8.479573e-01	k: 25316	n:30000
KS ci ratio: 8.308915e-02	ci left: 6.618981e-02	ci right 7.196065e-02	k: 2071	n:30000
PCDHA4   30000 perm   7 sec   (4162 perm/sec)   p_kst 6.903333e-02   p_cons 8.438667e-01   p_joint 1.509000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHA4.9_2870_30000_0.069033_0.84387_0.1509.png
                gene_name: PCDHA4
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.069 
        ci_ks_bounds_left: 0.066 
       ci_ks_bounds_right: 0.072 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 16 percent done.
PCDHA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.328272e-02	ci left: 2.684428e-01	ci right 2.860871e-01	k: 2772	n:10000
Cons ci ratio: 9.317333e-03	ci left: 9.420117e-01	ci right 9.509260e-01	k: 9466	n:10000
KS ci ratio: 9.518550e-02	ci left: 1.380551e-01	ci right 1.519524e-01	k: 1449	n:10000
PCDHA6   10000 perm   2 sec   (4676 perm/sec)   p_kst 1.449000e-01   p_cons 9.466000e-01   p_joint 2.772000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHA6.9_2885_10000_0.1449_0.9466_0.2772.png
                gene_name: PCDHA6
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 17 percent done.
PCDHB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.637301e-02	ci left: 2.499404e-01	ci right 2.672005e-01	k: 2585	n:10000
Cons ci ratio: 6.114250e-02	ci left: 2.823074e-01	ci right 3.002143e-01	k: 2912	n:10000
KS ci ratio: 7.783900e-02	ci left: 1.943656e-01	ci right 2.102082e-01	k: 2022	n:10000
PCDHB2   10000 perm   2 sec   (5045 perm/sec)   p_kst 2.022000e-01   p_cons 2.912000e-01   p_joint 2.585000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHB2.9_2401_10000_0.2022_0.2912_0.2585.png
                gene_name: PCDHB2
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 19 percent done.
PCDHGA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.395245e-02	ci left: 2.642855e-01	ci right 2.818469e-01	k: 2730	n:10000
Cons ci ratio: 6.102425e-02	ci left: 2.831000e-01	ci right 3.010213e-01	k: 2920	n:10000
KS ci ratio: 7.470260e-02	ci left: 2.077708e-01	ci right 2.239950e-01	k: 2158	n:10000
PCDHGA1   10000 perm   2 sec   (5245 perm/sec)   p_kst 2.158000e-01   p_cons 2.920000e-01   p_joint 2.730000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHGA1.8_2862_10000_0.2158_0.292_0.273.png
                gene_name: PCDHGA1
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 20 percent done.
PCDHGA8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.238882e-01	ci left: 8.533549e-02	ci right 9.670407e-02	k: 909	n:10000
Cons ci ratio: 4.159520e-02	ci left: 4.604773e-01	ci right 4.801400e-01	k: 4703	n:10000
KS ci ratio: 2.589536e-01	ci left: 1.949575e-02	ci right 2.538701e-02	k: 223	n:10000
PCDHGA8   10000 perm   2 sec   (4775 perm/sec)   p_kst 2.230000e-02   p_cons 4.703000e-01   p_joint 9.090000e-02

Joint ci ratio: 1.053865e-01	ci left: 6.128043e-02	ci right 6.814678e-02	k: 1293	n:20000
Cons ci ratio: 2.935861e-02	ci left: 4.643115e-01	ci right 4.781968e-01	k: 9425	n:20000
KS ci ratio: 1.930428e-01	ci left: 1.824762e-02	ci right 2.219360e-02	k: 403	n:20000
PCDHGA8   20000 perm   5 sec   (4337 perm/sec)   p_kst 2.015000e-02   p_cons 4.712500e-01   p_joint 6.465000e-02

Joint ci ratio: 1.015702e-01	ci left: 4.489262e-02	ci right 4.972887e-02	k: 1418	n:30000
Cons ci ratio: 2.392301e-02	ci left: 4.666037e-01	ci right 4.779350e-01	k: 14168	n:30000
KS ci ratio: 1.577530e-01	ci left: 1.857388e-02	ci right 2.178665e-02	k: 604	n:30000
PCDHGA8   30000 perm   7 sec   (4167 perm/sec)   p_kst 2.013333e-02   p_cons 4.722667e-01   p_joint 4.726667e-02

Joint ci ratio: 9.995650e-02	ci left: 3.517134e-02	ci right 3.889625e-02	k: 1480	n:40000
Cons ci ratio: 2.070540e-02	ci left: 4.676721e-01	ci right 4.774819e-01	k: 18903	n:40000
KS ci ratio: 1.392550e-01	ci left: 1.807082e-02	ci right 2.079957e-02	k: 776	n:40000
PCDHGA8   40000 perm   10 sec   (4060 perm/sec)   p_kst 1.940000e-02   p_cons 4.725750e-01   p_joint 3.700000e-02

Joint ci ratio: 6.604405e-02	ci left: 6.364207e-02	ci right 6.800850e-02	k: 3290	n:50000
Cons ci ratio: 1.856333e-02	ci left: 4.670163e-01	ci right 4.757870e-01	k: 23570	n:50000
KS ci ratio: 1.241794e-01	ci left: 1.832534e-02	ci right 2.077089e-02	k: 976	n:50000
PCDHGA8   50000 perm   13 sec   (3982 perm/sec)   p_kst 1.952000e-02   p_cons 4.714000e-01   p_joint 6.580000e-02

Joint ci ratio: 6.323984e-02	ci left: 5.827692e-02	ci right 6.209910e-02	k: 3610	n:60000
Cons ci ratio: 1.690131e-02	ci left: 4.687149e-01	ci right 4.767210e-01	k: 28363	n:60000
KS ci ratio: 1.142780e-01	ci left: 1.813314e-02	ci right 2.034704e-02	k: 1153	n:60000
PCDHGA8   60000 perm   15 sec   (3907 perm/sec)   p_kst 1.921667e-02   p_cons 4.727167e-01   p_joint 6.016667e-02

Joint ci ratio: 5.668779e-02	ci left: 6.212735e-02	ci right 6.576604e-02	k: 4475	n:70000
Cons ci ratio: 1.569937e-02	ci left: 4.673678e-01	ci right 4.747775e-01	k: 32975	n:70000
KS ci ratio: 1.050608e-01	ci left: 1.847456e-02	ci right 2.053697e-02	k: 1364	n:70000
PCDHGA8   70000 perm   18 sec   (3844 perm/sec)   p_kst 1.948571e-02   p_cons 4.710714e-01   p_joint 6.392857e-02

Joint ci ratio: 6.505693e-02	ci left: 4.199840e-02	ci right 4.483483e-02	k: 3472	n:80000
Cons ci ratio: 1.466216e-02	ci left: 4.683981e-01	ci right 4.753290e-01	k: 37749	n:80000
KS ci ratio: 9.352522e-02	ci left: 2.048162e-02	ci right 2.250329e-02	k: 1718	n:80000
PCDHGA8   80000 perm   21 sec   (3784 perm/sec)   p_kst 2.147500e-02   p_cons 4.718625e-01   p_joint 4.340000e-02

Outputting figure to mutsig2_images.part000000000127/PCDHGA8.8_2854_80000_0.021475_0.47186_0.0434.png
                gene_name: PCDHGA8
               theta_stop: 0.094 
                    nperm: 80000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.023 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.043 
     ci_joint_bounds_left: 0.042 
    ci_joint_bounds_right: 0.045 

Current progress: 22 percent done.
PCDHB13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.914966e-02	ci left: 3.791296e-01	ci right 3.983352e-01	k: 3887	n:10000
Cons ci ratio: 1.212673e-01	ci left: 8.883535e-02	ci right 1.004021e-01	k: 945	n:10000
KS ci ratio: 2.770196e-02	ci left: 6.575647e-01	ci right 6.761380e-01	k: 6669	n:10000
PCDHB13   10000 perm   2 sec   (5351 perm/sec)   p_kst 6.669000e-01   p_cons 9.450000e-02   p_joint 3.887000e-01

Joint ci ratio: 4.605013e-02	ci left: 2.597863e-01	ci right 2.720818e-01	k: 5318	n:20000
Cons ci ratio: 8.797668e-02	ci left: 8.631360e-02	ci right 9.430597e-02	k: 1805	n:20000
KS ci ratio: 1.950087e-02	ci left: 6.623286e-01	ci right 6.754223e-01	k: 13378	n:20000
PCDHB13   20000 perm   4 sec   (4856 perm/sec)   p_kst 6.689000e-01   p_cons 9.025000e-02   p_joint 2.659000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHB13.7_2401_20000_0.6689_0.09025_0.2659.png
                gene_name: PCDHB13
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.090 
      ci_cons_bounds_left: 0.086 
     ci_cons_bounds_right: 0.094 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 23 percent done.
PCDHB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.842512e-01	ci left: 3.929883e-02	ci right 4.736993e-02	k: 432	n:10000
Cons ci ratio: 3.287702e-02	ci left: 5.772755e-01	ci right 5.966738e-01	k: 5870	n:10000
KS ci ratio: 3.618281e-01	ci left: 9.503508e-03	ci right 1.378807e-02	k: 115	n:10000
PCDHB4   10000 perm   2 sec   (5377 perm/sec)   p_kst 1.150000e-02   p_cons 5.870000e-01   p_joint 4.320000e-02

Joint ci ratio: 9.556323e-02	ci left: 7.387984e-02	ci right 8.134352e-02	k: 1551	n:20000
Cons ci ratio: 2.261441e-02	ci left: 5.935223e-01	ci right 6.071485e-01	k: 12007	n:20000
KS ci ratio: 2.509773e-01	ci left: 1.053722e-02	ci right 1.360709e-02	k: 240	n:20000
PCDHB4   20000 perm   4 sec   (4832 perm/sec)   p_kst 1.200000e-02   p_cons 6.003500e-01   p_joint 7.755000e-02

Joint ci ratio: 1.144993e-01	ci left: 3.544322e-02	ci right 3.978025e-02	k: 1127	n:30000
Cons ci ratio: 1.836696e-02	ci left: 5.973368e-01	ci right 6.084433e-01	k: 18087	n:30000
KS ci ratio: 2.214841e-01	ci left: 9.188445e-03	ci right 1.150785e-02	k: 309	n:30000
PCDHB4   30000 perm   6 sec   (4617 perm/sec)   p_kst 1.030000e-02   p_cons 6.029000e-01   p_joint 3.756667e-02

Joint ci ratio: 1.099928e-01	ci left: 2.907980e-02	ci right 3.248877e-02	k: 1230	n:40000
Cons ci ratio: 1.591470e-02	ci left: 5.978347e-01	ci right 6.074504e-01	k: 24106	n:40000
KS ci ratio: 1.880181e-01	ci left: 9.738713e-03	ci right 1.178324e-02	k: 429	n:40000
PCDHB4   40000 perm   9 sec   (4482 perm/sec)   p_kst 1.072500e-02   p_cons 6.026500e-01   p_joint 3.075000e-02

Joint ci ratio: 9.349981e-02	ci left: 3.236994e-02	ci right 3.556446e-02	k: 1697	n:50000
Cons ci ratio: 1.405252e-02	ci left: 6.045062e-01	ci right 6.130812e-01	k: 30440	n:50000
KS ci ratio: 1.668404e-01	ci left: 1.000837e-02	ci right 1.184908e-02	k: 545	n:50000
PCDHB4   50000 perm   11 sec   (4366 perm/sec)   p_kst 1.090000e-02   p_cons 6.088000e-01   p_joint 3.394000e-02

Joint ci ratio: 9.334997e-02	ci left: 2.721566e-02	ci right 2.989686e-02	k: 1712	n:60000
Cons ci ratio: 1.281741e-02	ci left: 6.052823e-01	ci right 6.131072e-01	k: 36552	n:60000
KS ci ratio: 1.525632e-01	ci left: 1.005250e-02	ci right 1.172865e-02	k: 652	n:60000
PCDHB4   60000 perm   14 sec   (4268 perm/sec)   p_kst 1.086667e-02   p_cons 6.092000e-01   p_joint 2.853333e-02

Joint ci ratio: 9.631984e-02	ci left: 2.199982e-02	ci right 2.423995e-02	k: 1617	n:70000
Cons ci ratio: 1.207884e-02	ci left: 5.970893e-01	ci right 6.043595e-01	k: 42051	n:70000
KS ci ratio: 1.412306e-01	ci left: 1.011642e-02	ci right 1.166738e-02	k: 761	n:70000
PCDHB4   70000 perm   17 sec   (4186 perm/sec)   p_kst 1.087143e-02   p_cons 6.007286e-01   p_joint 2.310000e-02

Joint ci ratio: 8.430770e-02	ci left: 2.520205e-02	ci right 2.743248e-02	k: 2104	n:80000
Cons ci ratio: 1.132122e-02	ci left: 5.963701e-01	ci right 6.031727e-01	k: 47982	n:80000
KS ci ratio: 1.306650e-01	ci left: 1.039761e-02	ci right 1.186317e-02	k: 889	n:80000
PCDHB4   80000 perm   19 sec   (4109 perm/sec)   p_kst 1.111250e-02   p_cons 5.997750e-01   p_joint 2.630000e-02

Joint ci ratio: 7.812656e-02	ci left: 2.614697e-02	ci right 2.828365e-02	k: 2448	n:90000
Cons ci ratio: 1.068111e-02	ci left: 5.962344e-01	ci right 6.026481e-01	k: 53950	n:90000
KS ci ratio: 1.225900e-01	ci left: 1.054425e-02	ci right 1.193196e-02	k: 1010	n:90000
PCDHB4   90000 perm   22 sec   (4039 perm/sec)   p_kst 1.122222e-02   p_cons 5.994444e-01   p_joint 2.720000e-02

Joint ci ratio: 7.240022e-02	ci left: 2.744790e-02	ci right 2.951957e-02	k: 2847	n:100000
Cons ci ratio: 1.011686e-02	ci left: 5.971660e-01	ci right 6.032482e-01	k: 60021	n:100000
KS ci ratio: 1.151301e-01	ci left: 1.079980e-02	ci right 1.212877e-02	k: 1145	n:100000
PCDHB4   100000 perm   25 sec   (3970 perm/sec)   p_kst 1.145000e-02   p_cons 6.002100e-01   p_joint 2.847000e-02

Joint ci ratio: 6.956763e-02	ci left: 2.707769e-02	ci right 2.903821e-02	k: 3085	n:110000
Cons ci ratio: 9.652837e-03	ci left: 5.969704e-01	ci right 6.027698e-01	k: 65986	n:110000
KS ci ratio: 1.097546e-01	ci left: 1.083407e-02	ci right 1.210098e-02	k: 1260	n:110000
PCDHB4   110000 perm   28 sec   (3908 perm/sec)   p_kst 1.145455e-02   p_cons 5.998727e-01   p_joint 2.804545e-02

Joint ci ratio: 6.919237e-02	ci left: 2.514789e-02	ci right 2.695845e-02	k: 3125	n:120000
Cons ci ratio: 9.241851e-03	ci left: 5.970965e-01	ci right 6.026487e-01	k: 71985	n:120000
KS ci ratio: 1.054955e-01	ci left: 1.077455e-02	ci right 1.198257e-02	k: 1364	n:120000
PCDHB4   120000 perm   31 sec   (3847 perm/sec)   p_kst 1.136667e-02   p_cons 5.998750e-01   p_joint 2.604167e-02

Joint ci ratio: 6.854791e-02	ci left: 2.369665e-02	ci right 2.538619e-02	k: 3189	n:130000
Cons ci ratio: 8.875982e-03	ci left: 5.973848e-01	ci right 6.027184e-01	k: 78007	n:130000
KS ci ratio: 1.019424e-01	ci left: 1.067251e-02	ci right 1.182637e-02	k: 1461	n:130000
PCDHB4   130000 perm   34 sec   (3779 perm/sec)   p_kst 1.123846e-02   p_cons 6.000538e-01   p_joint 2.453077e-02

Joint ci ratio: 6.260319e-02	ci left: 2.638932e-02	ci right 2.810176e-02	k: 3813	n:140000
Cons ci ratio: 8.553439e-03	ci left: 5.974639e-01	ci right 6.026033e-01	k: 84005	n:140000
KS ci ratio: 9.765437e-02	ci left: 1.082259e-02	ci right 1.194064e-02	k: 1592	n:140000
PCDHB4   140000 perm   38 sec   (3715 perm/sec)   p_kst 1.137143e-02   p_cons 6.000357e-01   p_joint 2.723571e-02

Outputting figure to mutsig2_images.part000000000127/PCDHB4.7_2392_140000_0.011371_0.60004_0.027236.png
                gene_name: PCDHB4
               theta_stop: 0.098 
                    nperm: 140000 
                     p_ks: 0.011 
        ci_ks_bounds_left: 0.011 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.027 
     ci_joint_bounds_left: 0.026 
    ci_joint_bounds_right: 0.028 

Current progress: 25 percent done.
PCDHB6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.508193e-02	ci left: 8.643742e-01	ci right 8.776089e-01	k: 8711	n:10000
Cons ci ratio: 3.626257e-02	ci left: 5.289696e-01	ci right 5.486078e-01	k: 5388	n:10000
KS ci ratio: 2.866147e-02	ci left: 6.421684e-01	ci right 6.609432e-01	k: 6516	n:10000
PCDHB6   10000 perm   2 sec   (5050 perm/sec)   p_kst 6.516000e-01   p_cons 5.388000e-01   p_joint 8.711000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHB6.7_2389_10000_0.6516_0.5388_0.8711.png
                gene_name: PCDHB6
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.88 

Current progress: 26 percent done.
PCDHGA11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.631413e-02	ci left: 8.452954e-01	ci right 8.592987e-01	k: 8524	n:10000
Cons ci ratio: 1.335882e-02	ci left: 8.898512e-01	ci right 9.019170e-01	k: 8960	n:10000
KS ci ratio: 3.692423e-02	ci left: 5.199601e-01	ci right 5.396225e-01	k: 5298	n:10000
PCDHGA11   10000 perm   2 sec   (4725 perm/sec)   p_kst 5.298000e-01   p_cons 8.960000e-01   p_joint 8.524000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHGA11.7_2905_10000_0.5298_0.896_0.8524.png
                gene_name: PCDHGA11
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 28 percent done.
PCDHGA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.287598e-02	ci left: 2.161558e-01	ci right 2.326051e-01	k: 2243	n:10000
Cons ci ratio: 7.171345e-03	ci left: 9.640458e-01	ci right 9.710784e-01	k: 9677	n:10000
KS ci ratio: 1.121293e-01	ci left: 1.027615e-01	ci right 1.150674e-01	k: 1088	n:10000
PCDHGA3   10000 perm   2 sec   (5020 perm/sec)   p_kst 1.088000e-01   p_cons 9.677000e-01   p_joint 2.243000e-01

Joint ci ratio: 4.933866e-02	ci left: 2.339455e-01	ci right 2.458303e-01	k: 4797	n:20000
Cons ci ratio: 4.768366e-03	ci left: 9.688914e-01	ci right 9.735702e-01	k: 19426	n:20000
KS ci ratio: 7.884271e-02	ci left: 1.056464e-01	ci right 1.143673e-01	k: 2199	n:20000
PCDHGA3   20000 perm   4 sec   (4514 perm/sec)   p_kst 1.099500e-01   p_cons 9.713000e-01   p_joint 2.398500e-01

Outputting figure to mutsig2_images.part000000000127/PCDHGA3.7_2879_20000_0.10995_0.9713_0.23985.png
                gene_name: PCDHGA3
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 29 percent done.
PCF11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.401460e-02	ci left: 7.182540e-01	ci right 7.358135e-01	k: 7271	n:10000
Cons ci ratio: 5.697756e-03	ci left: 9.764223e-01	ci right 9.820937e-01	k: 9794	n:10000
KS ci ratio: 3.789127e-02	ci left: 5.070521e-01	ci right 5.267381e-01	k: 5169	n:10000
PCF11   10000 perm   2 sec   (4737 perm/sec)   p_kst 5.169000e-01   p_cons 9.794000e-01   p_joint 7.271000e-01

Outputting figure to mutsig2_images.part000000000127/PCF11.7_4732_10000_0.5169_0.9794_0.7271.png
                gene_name: PCF11
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 30 percent done.
PCMTD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.055584e-02	ci left: 6.124120e-01	ci right 6.315169e-01	k: 6220	n:10000
Cons ci ratio: 1.364354e-02	ci left: 8.857521e-01	ci right 8.980186e-01	k: 8920	n:10000
KS ci ratio: 5.034940e-02	ci left: 3.677867e-01	ci right 3.868848e-01	k: 3773	n:10000
PCMTD1   10000 perm   2 sec   (5370 perm/sec)   p_kst 3.773000e-01   p_cons 8.920000e-01   p_joint 6.220000e-01

Outputting figure to mutsig2_images.part000000000127/PCMTD1.7_1094_10000_0.3773_0.892_0.622.png
                gene_name: PCMTD1
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 32 percent done.
PCNXL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.691241e-02	ci left: 8.358217e-01	ci right 8.501778e-01	k: 8431	n:10000
Cons ci ratio: 2.257142e-02	ci left: 7.424021e-01	ci right 7.594515e-01	k: 7510	n:10000
KS ci ratio: 2.878780e-02	ci left: 6.401566e-01	ci right 6.589562e-01	k: 6496	n:10000
PCNXL2   10000 perm   2 sec   (4167 perm/sec)   p_kst 6.496000e-01   p_cons 7.510000e-01   p_joint 8.431000e-01

Outputting figure to mutsig2_images.part000000000127/PCNXL2.7_6550_10000_0.6496_0.751_0.8431.png
                gene_name: PCNXL2
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 33 percent done.
PCDHA8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.382384e-02	ci left: 2.650773e-01	ci right 2.826547e-01	k: 2738	n:10000
Cons ci ratio: 2.792668e-02	ci left: 6.539410e-01	ci right 6.725638e-01	k: 6633	n:10000
KS ci ratio: 9.507050e-02	ci left: 1.383491e-01	ci right 1.522583e-01	k: 1452	n:10000
PCDHA8   10000 perm   2 sec   (4930 perm/sec)   p_kst 1.452000e-01   p_cons 6.633000e-01   p_joint 2.738000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHA8.6_2920_10000_0.1452_0.6633_0.2738.png
                gene_name: PCDHA8
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 35 percent done.
PCDHA9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.591874e-02	ci left: 3.201890e-01	ci right 3.387104e-01	k: 3294	n:10000
Cons ci ratio: 5.169352e-02	ci left: 3.555546e-01	ci right 3.745241e-01	k: 3650	n:10000
KS ci ratio: 5.969375e-02	ci left: 2.922170e-01	ci right 3.102989e-01	k: 3012	n:10000
PCDHA9   10000 perm   2 sec   (5316 perm/sec)   p_kst 3.012000e-01   p_cons 3.650000e-01   p_joint 3.294000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHA9.6_3004_10000_0.3012_0.365_0.3294.png
                gene_name: PCDHA9
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 36 percent done.
PCDHB11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.844278e-02	ci left: 2.384731e-01	ci right 2.554745e-01	k: 2469	n:10000
Cons ci ratio: 7.231530e-02	ci left: 2.188203e-01	ci right 2.353390e-01	k: 2270	n:10000
KS ci ratio: 4.706387e-02	ci left: 3.998396e-01	ci right 4.192132e-01	k: 4095	n:10000
PCDHB11   10000 perm   2 sec   (5432 perm/sec)   p_kst 4.095000e-01   p_cons 2.270000e-01   p_joint 2.469000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHB11.6_2398_10000_0.4095_0.227_0.2469.png
                gene_name: PCDHB11
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 38 percent done.
PCDHB14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.014497e-01	ci left: 1.232714e-01	ci right 1.365450e-01	k: 1298	n:10000
Cons ci ratio: 1.511547e-02	ci left: 8.638635e-01	ci right 8.771198e-01	k: 8706	n:10000
KS ci ratio: 1.463924e-01	ci left: 6.198316e-02	ci right 7.187095e-02	k: 668	n:10000
PCDHB14   10000 perm   2 sec   (5073 perm/sec)   p_kst 6.680000e-02   p_cons 8.706000e-01   p_joint 1.298000e-01

Joint ci ratio: 6.781419e-02	ci left: 1.382740e-01	ci right 1.480299e-01	k: 2862	n:20000
Cons ci ratio: 1.084323e-02	ci left: 8.625199e-01	ci right 8.719730e-01	k: 17346	n:20000
KS ci ratio: 9.969730e-02	ci left: 6.816195e-02	ci right 7.536315e-02	k: 1434	n:20000
PCDHB14   20000 perm   4 sec   (4631 perm/sec)   p_kst 7.170000e-02   p_cons 8.673000e-01   p_joint 1.431000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHB14.6_2401_20000_0.0717_0.8673_0.1431.png
                gene_name: PCDHB14
               theta_stop: 0.100 
                    nperm: 20000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.075 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 39 percent done.
PCDHGB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.829530e-02	ci left: 5.017506e-01	ci right 5.214426e-01	k: 5116	n:10000
Cons ci ratio: 5.521756e-02	ci left: 3.257483e-01	ci right 3.443479e-01	k: 3350	n:10000
KS ci ratio: 4.533675e-02	ci left: 4.179754e-01	ci right 4.374667e-01	k: 4277	n:10000
PCDHGB3   10000 perm   2 sec   (4965 perm/sec)   p_kst 4.277000e-01   p_cons 3.350000e-01   p_joint 5.116000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHGB3.6_2834_10000_0.4277_0.335_0.5116.png
                gene_name: PCDHGB3
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 41 percent done.
PCDHGB5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.993563e-02	ci left: 2.905320e-01	ci right 3.085849e-01	k: 2995	n:10000
Cons ci ratio: 3.291093e-02	ci left: 5.767739e-01	ci right 5.961757e-01	k: 5865	n:10000
KS ci ratio: 1.151171e-01	ci left: 9.788810e-02	ci right 1.099437e-01	k: 1038	n:10000
PCDHGB5   10000 perm   2 sec   (4207 perm/sec)   p_kst 1.038000e-01   p_cons 5.865000e-01   p_joint 2.995000e-01

Joint ci ratio: 5.345536e-02	ci left: 2.062041e-01	ci right 2.175798e-01	k: 4237	n:20000
Cons ci ratio: 2.347736e-02	ci left: 5.753783e-01	ci right 5.890977e-01	k: 11645	n:20000
KS ci ratio: 8.148920e-02	ci left: 9.945851e-02	ci right 1.079571e-01	k: 2073	n:20000
PCDHGB5   20000 perm   5 sec   (4098 perm/sec)   p_kst 1.036500e-01   p_cons 5.822500e-01   p_joint 2.118500e-01

Outputting figure to mutsig2_images.part000000000127/PCDHGB5.6_2847_20000_0.10365_0.58225_0.21185.png
                gene_name: PCDHGB5
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.099 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 42 percent done.
PCDHB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.376300e-02	ci left: 3.376659e-01	ci right 3.564232e-01	k: 3470	n:10000
Cons ci ratio: 2.878780e-02	ci left: 6.401566e-01	ci right 6.589562e-01	k: 6496	n:10000
KS ci ratio: 7.854533e-02	ci left: 1.915089e-01	ci right 2.072666e-01	k: 1993	n:10000
PCDHB3   10000 perm   2 sec   (5530 perm/sec)   p_kst 1.993000e-01   p_cons 6.496000e-01   p_joint 3.470000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHB3.5_2395_10000_0.1993_0.6496_0.347.png
                gene_name: PCDHB3
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 43 percent done.
PCDHB5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.277403e-02	ci left: 4.466014e-01	ci right 4.662240e-01	k: 4564	n:10000
Cons ci ratio: 2.635322e-02	ci left: 6.795209e-01	ci right 6.977691e-01	k: 6887	n:10000
KS ci ratio: 7.411193e-02	ci left: 2.104338e-01	ci right 2.267305e-01	k: 2185	n:10000
PCDHB5   10000 perm   2 sec   (5291 perm/sec)   p_kst 2.185000e-01   p_cons 6.887000e-01   p_joint 4.564000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHB5.5_2392_10000_0.2185_0.6887_0.4564.png
                gene_name: PCDHB5
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 45 percent done.
PCDHGA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.143206e-01	ci left: 9.915477e-02	ci right 1.112763e-01	k: 1051	n:10000
Cons ci ratio: 5.310533e-02	ci left: 3.432297e-01	ci right 3.620562e-01	k: 3526	n:10000
KS ci ratio: 1.491591e-01	ci left: 5.976289e-02	ci right 6.949263e-02	k: 645	n:10000
PCDHGA2   10000 perm   2 sec   (5557 perm/sec)   p_kst 6.450000e-02   p_cons 3.526000e-01   p_joint 1.051000e-01

Joint ci ratio: 7.210431e-02	ci left: 1.240883e-01	ci right 1.334200e-01	k: 2574	n:20000
Cons ci ratio: 3.703454e-02	ci left: 3.523476e-01	ci right 3.656934e-01	k: 7180	n:20000
KS ci ratio: 1.036003e-01	ci left: 6.332911e-02	ci right 7.029747e-02	k: 1335	n:20000
PCDHGA2   20000 perm   4 sec   (4950 perm/sec)   p_kst 6.675000e-02   p_cons 3.590000e-01   p_joint 1.287000e-01

Joint ci ratio: 6.113308e-02	ci left: 1.168364e-01	ci right 1.242373e-01	k: 3615	n:30000
Cons ci ratio: 3.145069e-02	ci left: 3.357675e-01	ci right 3.465299e-01	k: 10234	n:30000
KS ci ratio: 8.468047e-02	ci left: 6.383672e-02	ci right 6.951422e-02	k: 1999	n:30000
PCDHGA2   30000 perm   6 sec   (4707 perm/sec)   p_kst 6.663333e-02   p_cons 3.411333e-01   p_joint 1.205000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHGA2.5_2861_30000_0.066633_0.34113_0.1205.png
                gene_name: PCDHGA2
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.067 
        ci_ks_bounds_left: 0.064 
       ci_ks_bounds_right: 0.070 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 46 percent done.
PCDHGA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.242904e-01	ci left: 1.206533e-02	ci right 1.682370e-02	k: 143	n:10000
Cons ci ratio: 1.620383e-02	ci left: 8.470282e-01	ci right 8.609649e-01	k: 8541	n:10000
KS ci ratio: 1.306013e+00	ci left: 3.454445e-04	ci right 1.575707e-03	k: 8	n:10000
PCDHGA4   10000 perm   2 sec   (5294 perm/sec)   p_kst 8.000000e-04   p_cons 8.541000e-01   p_joint 1.430000e-02

Joint ci ratio: 3.325311e-01	ci left: 5.754049e-03	ci right 8.092762e-03	k: 137	n:20000
Cons ci ratio: 1.123093e-02	ci left: 8.540996e-01	ci right 8.637958e-01	k: 17180	n:20000
KS ci ratio: 9.795835e-01	ci left: 4.198281e-04	ci right 1.236710e-03	k: 15	n:20000
PCDHGA4   20000 perm   4 sec   (4772 perm/sec)   p_kst 7.500000e-04   p_cons 8.590000e-01   p_joint 6.850000e-03

Joint ci ratio: 3.293414e-01	ci left: 3.927077e-03	ci right 5.504534e-03	k: 140	n:30000
Cons ci ratio: 9.866786e-03	ci left: 8.361051e-01	ci right 8.444289e-01	k: 25209	n:30000
KS ci ratio: 8.762318e-01	ci left: 3.813497e-04	ci right 9.888526e-04	k: 19	n:30000
PCDHGA4   30000 perm   7 sec   (4532 perm/sec)   p_kst 6.333333e-04   p_cons 8.403000e-01   p_joint 4.666667e-03

Joint ci ratio: 2.036790e-01	ci left: 8.240160e-03	ci right 1.013212e-02	k: 366	n:40000
Cons ci ratio: 8.572651e-03	ci left: 8.357900e-01	ci right 8.430107e-01	k: 33577	n:40000
KS ci ratio: 7.154134e-01	ci left: 4.855960e-04	ci right 1.041056e-03	k: 29	n:40000
PCDHGA4   40000 perm   9 sec   (4390 perm/sec)   p_kst 7.250000e-04   p_cons 8.394250e-01   p_joint 9.150000e-03

Joint ci ratio: 2.044299e-01	ci left: 6.553571e-03	ci right 8.064478e-03	k: 364	n:50000
Cons ci ratio: 7.680225e-03	ci left: 8.357287e-01	ci right 8.421919e-01	k: 41949	n:50000
KS ci ratio: 6.046090e-01	ci left: 5.885084e-04	ci right 1.112260e-03	k: 41	n:50000
PCDHGA4   50000 perm   12 sec   (4280 perm/sec)   p_kst 8.200000e-04   p_cons 8.389800e-01   p_joint 7.280000e-03

Joint ci ratio: 2.161832e-01	ci left: 4.860829e-03	ci right 6.054440e-03	k: 326	n:60000
Cons ci ratio: 6.968085e-03	ci left: 8.376798e-01	ci right 8.435538e-01	k: 50438	n:60000
KS ci ratio: 5.597666e-01	ci left: 5.899139e-04	ci right 1.060546e-03	k: 48	n:60000
PCDHGA4   60000 perm   14 sec   (4190 perm/sec)   p_kst 8.000000e-04   p_cons 8.406333e-01   p_joint 5.433333e-03

Joint ci ratio: 2.102175e-01	ci left: 4.423254e-03	ci right 5.475570e-03	k: 345	n:70000
Cons ci ratio: 6.451292e-03	ci left: 8.378958e-01	ci right 8.433330e-01	k: 58844	n:70000
KS ci ratio: 5.058493e-01	ci left: 6.416819e-04	ci right 1.087091e-03	k: 59	n:70000
PCDHGA4   70000 perm   17 sec   (4112 perm/sec)   p_kst 8.428571e-04   p_cons 8.406286e-01   p_joint 4.928571e-03

Joint ci ratio: 2.096752e-01	ci left: 3.893918e-03	ci right 4.817594e-03	k: 347	n:80000
Cons ci ratio: 6.040892e-03	ci left: 8.377933e-01	ci right 8.428820e-01	k: 67228	n:80000
KS ci ratio: 4.823166e-01	ci left: 6.271246e-04	ci right 1.035482e-03	k: 65	n:80000
PCDHGA4   80000 perm   20 sec   (4037 perm/sec)   p_kst 8.125000e-04   p_cons 8.403500e-01   p_joint 4.337500e-03

Joint ci ratio: 2.064755e-01	ci left: 3.577052e-03	ci right 4.410974e-03	k: 358	n:90000
Cons ci ratio: 5.690800e-03	ci left: 8.381585e-01	ci right 8.429529e-01	k: 75651	n:90000
KS ci ratio: 4.465318e-01	ci left: 6.653821e-04	ci right 1.056836e-03	k: 76	n:90000
PCDHGA4   90000 perm   23 sec   (3967 perm/sec)   p_kst 8.444444e-04   p_cons 8.405667e-01   p_joint 3.977778e-03

Joint ci ratio: 2.028631e-01	ci left: 3.342642e-03	ci right 4.106588e-03	k: 371	n:100000
Cons ci ratio: 5.388216e-03	ci left: 8.388092e-01	ci right 8.433510e-01	k: 84109	n:100000
KS ci ratio: 4.176874e-01	ci left: 6.968912e-04	ci right 1.073033e-03	k: 87	n:100000
PCDHGA4   100000 perm   26 sec   (3901 perm/sec)   p_kst 8.700000e-04   p_cons 8.410900e-01   p_joint 3.710000e-03

Joint ci ratio: 2.034471e-01	ci left: 3.021456e-03	ci right 3.714227e-03	k: 369	n:110000
Cons ci ratio: 5.135169e-03	ci left: 8.390357e-01	ci right 8.433644e-01	k: 92533	n:110000
KS ci ratio: 4.020080e-01	ci left: 6.906132e-04	ci right 1.045647e-03	k: 94	n:110000
PCDHGA4   110000 perm   29 sec   (3832 perm/sec)   p_kst 8.545455e-04   p_cons 8.412091e-01   p_joint 3.354545e-03

Joint ci ratio: 1.951833e-01	ci left: 3.023031e-03	ci right 3.684663e-03	k: 401	n:120000
Cons ci ratio: 4.918860e-03	ci left: 8.390024e-01	ci right 8.431478e-01	k: 100930	n:120000
KS ci ratio: 3.842194e-01	ci left: 7.006518e-04	ci right 1.040884e-03	k: 103	n:120000
PCDHGA4   120000 perm   32 sec   (3773 perm/sec)   p_kst 8.583333e-04   p_cons 8.410833e-01   p_joint 3.341667e-03

Joint ci ratio: 1.413097e-01	ci left: 5.468629e-03	ci right 6.307488e-03	k: 764	n:130000
Cons ci ratio: 4.724910e-03	ci left: 8.391399e-01	ci right 8.431218e-01	k: 109348	n:130000
KS ci ratio: 3.637990e-01	ci left: 7.303943e-04	ci right 1.061753e-03	k: 115	n:130000
PCDHGA4   130000 perm   35 sec   (3717 perm/sec)   p_kst 8.846154e-04   p_cons 8.411385e-01   p_joint 5.876923e-03

Joint ci ratio: 1.394282e-01	ci left: 5.222698e-03	ci right 6.012276e-03	k: 785	n:140000
Cons ci ratio: 4.550891e-03	ci left: 8.393394e-01	ci right 8.431750e-01	k: 117777	n:140000
KS ci ratio: 3.504576e-01	ci left: 7.367436e-04	ci right 1.055941e-03	k: 124	n:140000
PCDHGA4   140000 perm   38 sec   (3655 perm/sec)   p_kst 8.857143e-04   p_cons 8.412643e-01   p_joint 5.607143e-03

Joint ci ratio: 1.431636e-01	ci left: 4.617173e-03	ci right 5.335501e-03	k: 745	n:150000
Cons ci ratio: 4.405094e-03	ci left: 8.388850e-01	ci right 8.425951e-01	k: 126112	n:150000
KS ci ratio: 3.359837e-01	ci left: 7.546437e-04	ci right 1.065171e-03	k: 135	n:150000
PCDHGA4   150000 perm   42 sec   (3604 perm/sec)   p_kst 9.000000e-04   p_cons 8.407467e-01   p_joint 4.966667e-03

Joint ci ratio: 1.432825e-01	ci left: 4.322526e-03	ci right 4.995617e-03	k: 744	n:160000
Cons ci ratio: 4.264860e-03	ci left: 8.389666e-01	ci right 8.425585e-01	k: 134523	n:160000
KS ci ratio: 3.288121e-01	ci left: 7.418485e-04	ci right 1.039217e-03	k: 141	n:160000
PCDHGA4   160000 perm   45 sec   (3552 perm/sec)   p_kst 8.812500e-04   p_cons 8.407687e-01   p_joint 4.650000e-03

Joint ci ratio: 1.403979e-01	ci left: 4.244129e-03	ci right 4.890593e-03	k: 775	n:170000
Cons ci ratio: 4.140582e-03	ci left: 8.388217e-01	ci right 8.423079e-01	k: 142897	n:170000
KS ci ratio: 3.231754e-01	ci left: 7.252144e-04	ci right 1.009899e-03	k: 146	n:170000
PCDHGA4   170000 perm   49 sec   (3504 perm/sec)   p_kst 8.588235e-04   p_cons 8.405706e-01   p_joint 4.558824e-03

Joint ci ratio: 1.381109e-01	ci left: 4.147741e-03	ci right 4.768385e-03	k: 801	n:180000
Cons ci ratio: 4.029900e-03	ci left: 8.384711e-01	ci right 8.418624e-01	k: 151231	n:180000
KS ci ratio: 3.107380e-01	ci left: 7.462916e-04	ci right 1.025742e-03	k: 158	n:180000
PCDHGA4   180000 perm   52 sec   (3457 perm/sec)   p_kst 8.777778e-04   p_cons 8.401722e-01   p_joint 4.450000e-03

Joint ci ratio: 1.381272e-01	ci left: 3.929408e-03	ci right 4.517455e-03	k: 801	n:190000
Cons ci ratio: 3.920472e-03	ci left: 8.386503e-01	ci right 8.419499e-01	k: 159658	n:190000
KS ci ratio: 3.041173e-01	ci left: 7.410133e-04	ci right 1.011432e-03	k: 165	n:190000
PCDHGA4   190000 perm   56 sec   (3413 perm/sec)   p_kst 8.684211e-04   p_cons 8.403053e-01   p_joint 4.215789e-03

Joint ci ratio: 1.485424e-01	ci left: 3.212188e-03	ci right 3.732368e-03	k: 693	n:200000
Cons ci ratio: 3.823271e-03	ci left: 8.385465e-01	ci right 8.417636e-01	k: 168032	n:200000
KS ci ratio: 2.987679e-01	ci left: 7.316935e-04	ci right 9.931231e-04	k: 171	n:200000
PCDHGA4   200000 perm   59 sec   (3367 perm/sec)   p_kst 8.550000e-04   p_cons 8.401600e-01   p_joint 3.465000e-03

Joint ci ratio: 1.467621e-01	ci left: 3.137179e-03	ci right 3.638588e-03	k: 710	n:210000
Cons ci ratio: 3.731301e-03	ci left: 8.385732e-01	ci right 8.417127e-01	k: 176431	n:210000
KS ci ratio: 2.920536e-01	ci left: 7.321236e-04	ci right 9.867415e-04	k: 179	n:210000
PCDHGA4   210000 perm   63 sec   (3324 perm/sec)   p_kst 8.523810e-04   p_cons 8.401476e-01   p_joint 3.380952e-03

Joint ci ratio: 1.450440e-01	ci left: 3.069024e-03	ci right 3.553300e-03	k: 727	n:220000
Cons ci ratio: 3.642518e-03	ci left: 8.388309e-01	ci right 8.418965e-01	k: 184881	n:220000
KS ci ratio: 2.857726e-01	ci left: 7.325743e-04	ci right 9.808809e-04	k: 187	n:220000
PCDHGA4   220000 perm   67 sec   (3282 perm/sec)   p_kst 8.500000e-04   p_cons 8.403682e-01   p_joint 3.304545e-03

Joint ci ratio: 1.421457e-01	ci left: 3.061336e-03	ci right 3.533927e-03	k: 757	n:230000
Cons ci ratio: 3.558450e-03	ci left: 8.391674e-01	ci right 8.421631e-01	k: 193354	n:230000
KS ci ratio: 2.798801e-01	ci left: 7.330392e-04	ci right 9.754770e-04	k: 195	n:230000
PCDHGA4   230000 perm   71 sec   (3241 perm/sec)   p_kst 8.478261e-04   p_cons 8.406696e-01   p_joint 3.291304e-03

Joint ci ratio: 1.399501e-01	ci left: 3.030248e-03	ci right 3.490211e-03	k: 781	n:240000
Cons ci ratio: 3.483726e-03	ci left: 8.391837e-01	ci right 8.421164e-01	k: 201757	n:240000
KS ci ratio: 2.736672e-01	ci left: 7.373940e-04	ci right 9.749275e-04	k: 204	n:240000
PCDHGA4   240000 perm   75 sec   (3201 perm/sec)   p_kst 8.500000e-04   p_cons 8.406542e-01   p_joint 3.254167e-03

Joint ci ratio: 1.379390e-01	ci left: 2.997836e-03	ci right 3.445804e-03	k: 804	n:250000
Cons ci ratio: 3.414489e-03	ci left: 8.391230e-01	ci right 8.419971e-01	k: 210141	n:250000
KS ci ratio: 2.641695e-01	ci left: 7.638559e-04	ci right 9.999629e-04	k: 219	n:250000
PCDHGA4   250000 perm   79 sec   (3163 perm/sec)   p_kst 8.760000e-04   p_cons 8.405640e-01   p_joint 3.216000e-03

Joint ci ratio: 1.381197e-01	ci left: 2.875095e-03	ci right 3.305330e-03	k: 802	n:260000
Cons ci ratio: 3.185019e-03	ci left: 8.521388e-01	ci right 8.548610e-01	k: 221911	n:260000
KS ci ratio: 2.572453e-01	ci left: 7.776158e-04	ci right 1.010665e-03	k: 231	n:260000
PCDHGA4   260000 perm   83 sec   (3124 perm/sec)   p_kst 8.884615e-04   p_cons 8.535038e-01   p_joint 3.084615e-03

Joint ci ratio: 1.378696e-01	ci left: 2.779328e-03	ci right 3.194417e-03	k: 805	n:270000
Cons ci ratio: 3.125574e-03	ci left: 8.521568e-01	ci right 8.548282e-01	k: 230444	n:270000
KS ci ratio: 2.513545e-01	ci left: 7.869602e-04	ci right 1.016564e-03	k: 242	n:270000
PCDHGA4   270000 perm   87 sec   (3087 perm/sec)   p_kst 8.962963e-04   p_cons 8.534963e-01   p_joint 2.981481e-03

Joint ci ratio: 1.350496e-01	ci left: 2.797351e-03	ci right 3.205900e-03	k: 839	n:280000
Cons ci ratio: 3.071530e-03	ci left: 8.519948e-01	ci right 8.546193e-01	k: 238927	n:280000
KS ci ratio: 2.463365e-01	ci left: 7.923421e-04	ci right 1.018194e-03	k: 252	n:280000
PCDHGA4   280000 perm   92 sec   (3050 perm/sec)   p_kst 9.000000e-04   p_cons 8.533107e-01   p_joint 2.996429e-03

Joint ci ratio: 1.361170e-01	ci left: 2.657571e-03	ci right 3.049021e-03	k: 826	n:290000
Cons ci ratio: 3.019234e-03	ci left: 8.519240e-01	ci right 8.545034e-01	k: 247433	n:290000
KS ci ratio: 2.434677e-01	ci left: 7.844396e-04	ci right 1.005041e-03	k: 258	n:290000
PCDHGA4   290000 perm   96 sec   (3015 perm/sec)   p_kst 8.896552e-04   p_cons 8.532172e-01   p_joint 2.848276e-03

Joint ci ratio: 1.388435e-01	ci left: 2.465970e-03	ci right 2.837075e-03	k: 794	n:300000
Cons ci ratio: 2.966794e-03	ci left: 8.520891e-01	ci right 8.546241e-01	k: 256008	n:300000
KS ci ratio: 2.384558e-01	ci left: 7.927452e-04	ci right 1.010416e-03	k: 269	n:300000
PCDHGA4   300000 perm   101 sec   (2980 perm/sec)   p_kst 8.966667e-04   p_cons 8.533600e-01   p_joint 2.646667e-03

Joint ci ratio: 1.381543e-01	ci left: 2.411330e-03	ci right 2.772262e-03	k: 802	n:310000
Cons ci ratio: 2.919099e-03	ci left: 8.520626e-01	ci right 8.545566e-01	k: 264527	n:310000
KS ci ratio: 2.350002e-01	ci left: 7.914486e-04	ci right 1.005156e-03	k: 277	n:310000
PCDHGA4   310000 perm   105 sec   (2946 perm/sec)   p_kst 8.935484e-04   p_cons 8.533129e-01   p_joint 2.587097e-03

Joint ci ratio: 1.361353e-01	ci left: 2.408402e-03	ci right 2.763201e-03	k: 826	n:320000
Cons ci ratio: 2.870548e-03	ci left: 8.523077e-01	ci right 8.547609e-01	k: 273132	n:320000
KS ci ratio: 2.320970e-01	ci left: 7.873108e-04	ci right 9.968977e-04	k: 284	n:320000
PCDHGA4   320000 perm   110 sec   (2912 perm/sec)   p_kst 8.875000e-04   p_cons 8.535375e-01   p_joint 2.581250e-03

Joint ci ratio: 1.351611e-01	ci left: 2.370547e-03	ci right 2.717069e-03	k: 838	n:330000
Cons ci ratio: 2.826047e-03	ci left: 8.523862e-01	ci right 8.548015e-01	k: 281687	n:330000
KS ci ratio: 2.285168e-01	ci left: 7.891523e-04	ci right 9.955321e-04	k: 293	n:330000
PCDHGA4   330000 perm   115 sec   (2878 perm/sec)   p_kst 8.878788e-04   p_cons 8.535970e-01   p_joint 2.539394e-03

Joint ci ratio: 1.353279e-01	ci left: 2.295136e-03	ci right 2.631081e-03	k: 836	n:340000
Cons ci ratio: 2.783619e-03	ci left: 8.524545e-01	ci right 8.548336e-01	k: 290240	n:340000
KS ci ratio: 2.262211e-01	ci left: 7.825836e-04	ci right 9.849026e-04	k: 299	n:340000
PCDHGA4   340000 perm   119 sec   (2847 perm/sec)   p_kst 8.794118e-04   p_cons 8.536471e-01   p_joint 2.458824e-03

Joint ci ratio: 1.361504e-01	ci left: 2.201952e-03	ci right 2.526375e-03	k: 826	n:350000
Cons ci ratio: 2.743705e-03	ci left: 8.524589e-01	ci right 8.548038e-01	k: 298772	n:350000
KS ci ratio: 2.251003e-01	ci left: 7.683103e-04	ci right 9.658187e-04	k: 302	n:350000
PCDHGA4   350000 perm   124 sec   (2816 perm/sec)   p_kst 8.628571e-04   p_cons 8.536343e-01   p_joint 2.360000e-03

Joint ci ratio: 1.184988e-01	ci left: 2.850926e-03	ci right 3.212702e-03	k: 1090	n:360000
Cons ci ratio: 2.705610e-03	ci left: 8.524494e-01	ci right 8.547616e-01	k: 307299	n:360000
KS ci ratio: 2.207700e-01	ci left: 7.784410e-04	ci right 9.741813e-04	k: 314	n:360000
PCDHGA4   360000 perm   129 sec   (2787 perm/sec)   p_kst 8.722222e-04   p_cons 8.536083e-01   p_joint 3.027778e-03

Joint ci ratio: 1.236077e-01	ci left: 2.543210e-03	ci right 2.880870e-03	k: 1002	n:370000
Cons ci ratio: 2.668569e-03	ci left: 8.524866e-01	ci right 8.547673e-01	k: 315843	n:370000
KS ci ratio: 2.180191e-01	ci left: 7.778355e-04	ci right 9.706600e-04	k: 322	n:370000
PCDHGA4   370000 perm   134 sec   (2757 perm/sec)   p_kst 8.702703e-04   p_cons 8.536297e-01   p_joint 2.708108e-03

Joint ci ratio: 1.226956e-01	ci left: 2.514538e-03	ci right 2.845749e-03	k: 1017	n:380000
Cons ci ratio: 2.632093e-03	ci left: 8.526093e-01	ci right 8.548590e-01	k: 324420	n:380000
KS ci ratio: 2.143983e-01	ci left: 7.847464e-04	ci right 9.756283e-04	k: 333	n:380000
PCDHGA4   380000 perm   139 sec   (2728 perm/sec)   p_kst 8.763158e-04   p_cons 8.537368e-01   p_joint 2.676316e-03

Joint ci ratio: 1.213332e-01	ci left: 2.507237e-03	ci right 2.833556e-03	k: 1040	n:390000
Cons ci ratio: 2.598219e-03	ci left: 8.526152e-01	ci right 8.548359e-01	k: 332954	n:390000
KS ci ratio: 2.115667e-01	ci left: 7.864709e-04	ci right 9.749181e-04	k: 342	n:390000
PCDHGA4   390000 perm   144 sec   (2700 perm/sec)   p_kst 8.769231e-04   p_cons 8.537282e-01   p_joint 2.666667e-03

Joint ci ratio: 1.028999e-01	ci left: 3.428929e-03	ci right 3.803318e-03	k: 1445	n:400000
Cons ci ratio: 2.564978e-03	ci left: 8.526837e-01	ci right 8.548761e-01	k: 341513	n:400000
KS ci ratio: 2.082532e-01	ci left: 7.928639e-04	ci right 9.794883e-04	k: 353	n:400000
PCDHGA4   400000 perm   150 sec   (2673 perm/sec)   p_kst 8.825000e-04   p_cons 8.537825e-01   p_joint 3.612500e-03

Joint ci ratio: 1.019884e-01	ci left: 3.407085e-03	ci right 3.775595e-03	k: 1471	n:410000
Cons ci ratio: 2.533029e-03	ci left: 8.527442e-01	ci right 8.549093e-01	k: 350070	n:410000
KS ci ratio: 2.045305e-01	ci left: 8.035949e-04	ci right 9.889414e-04	k: 366	n:410000
PCDHGA4   410000 perm   155 sec   (2647 perm/sec)   p_kst 8.926829e-04   p_cons 8.538293e-01   p_joint 3.587805e-03

Joint ci ratio: 8.735708e-02	ci left: 4.562926e-03	ci right 4.982046e-03	k: 2003	n:420000
Cons ci ratio: 2.502962e-03	ci left: 8.527303e-01	ci right 8.548696e-01	k: 358597	n:420000
KS ci ratio: 2.017994e-01	ci left: 8.070602e-04	ci right 9.904141e-04	k: 376	n:420000
PCDHGA4   420000 perm   160 sec   (2621 perm/sec)   p_kst 8.952381e-04   p_cons 8.538024e-01   p_joint 4.769048e-03

Joint ci ratio: 9.419290e-02	ci left: 3.822613e-03	ci right 4.202723e-03	k: 1724	n:430000
Cons ci ratio: 2.474724e-03	ci left: 8.526378e-01	ci right 8.547528e-01	k: 367090	n:430000
KS ci ratio: 1.991749e-01	ci left: 8.103799e-04	ci right 9.918028e-04	k: 386	n:430000
PCDHGA4   430000 perm   166 sec   (2596 perm/sec)   p_kst 8.976744e-04   p_cons 8.536977e-01   p_joint 4.009302e-03

Joint ci ratio: 9.433456e-02	ci left: 3.724630e-03	ci right 4.095586e-03	k: 1719	n:440000
Cons ci ratio: 2.445505e-03	ci left: 8.527458e-01	ci right 8.548359e-01	k: 375669	n:440000
KS ci ratio: 1.971478e-01	ci left: 8.092419e-04	ci right 9.883446e-04	k: 394	n:440000
PCDHGA4   440000 perm   171 sec   (2572 perm/sec)   p_kst 8.954545e-04   p_cons 8.537932e-01   p_joint 3.906818e-03

Joint ci ratio: 9.330957e-02	ci left: 3.724324e-03	ci right 4.090998e-03	k: 1757	n:450000
Cons ci ratio: 2.417877e-03	ci left: 8.527889e-01	ci right 8.548555e-01	k: 384221	n:450000
KS ci ratio: 1.944583e-01	ci left: 8.145051e-04	ci right 9.920224e-04	k: 405	n:450000
PCDHGA4   450000 perm   177 sec   (2547 perm/sec)   p_kst 9.000000e-04   p_cons 8.538244e-01   p_joint 3.904444e-03

Joint ci ratio: 9.728171e-02	ci left: 3.346231e-03	ci right 3.690504e-03	k: 1617	n:460000
Cons ci ratio: 2.452538e-03	ci left: 8.463728e-01	ci right 8.484533e-01	k: 389811	n:460000
KS ci ratio: 1.914171e-01	ci left: 8.236947e-04	ci right 1.000080e-03	k: 418	n:460000
PCDHGA4   460000 perm   182 sec   (2523 perm/sec)   p_kst 9.086957e-04   p_cons 8.474152e-01   p_joint 3.515217e-03

Joint ci ratio: 9.713488e-02	ci left: 3.285409e-03	ci right 3.622886e-03	k: 1622	n:470000
Cons ci ratio: 2.426969e-03	ci left: 8.463133e-01	ci right 8.483718e-01	k: 398252	n:470000
KS ci ratio: 1.891728e-01	ci left: 8.264323e-04	ci right 1.001091e-03	k: 428	n:470000
PCDHGA4   470000 perm   188 sec   (2499 perm/sec)   p_kst 9.106383e-04   p_cons 8.473447e-01   p_joint 3.451064e-03

Joint ci ratio: 9.624986e-02	ci left: 3.277951e-03	ci right 3.611420e-03	k: 1652	n:480000
Cons ci ratio: 2.403400e-03	ci left: 8.461247e-01	ci right 8.481628e-01	k: 406630	n:480000
KS ci ratio: 1.876485e-01	ci left: 8.231104e-04	ci right 9.955056e-04	k: 435	n:480000
PCDHGA4   480000 perm   194 sec   (2475 perm/sec)   p_kst 9.062500e-04   p_cons 8.471458e-01   p_joint 3.441667e-03

Joint ci ratio: 9.744340e-02	ci left: 3.131387e-03	ci right 3.454122e-03	k: 1612	n:490000
Cons ci ratio: 2.378289e-03	ci left: 8.461854e-01	ci right 8.482023e-01	k: 415126	n:490000
KS ci ratio: 1.859505e-01	ci left: 8.218752e-04	ci right 9.922783e-04	k: 443	n:490000
PCDHGA4   490000 perm   200 sec   (2452 perm/sec)   p_kst 9.040816e-04   p_cons 8.471959e-01   p_joint 3.289796e-03

Joint ci ratio: 9.778169e-02	ci left: 3.047290e-03	ci right 3.362510e-03	k: 1601	n:500000
Cons ci ratio: 2.354258e-03	ci left: 8.462097e-01	ci right 8.482062e-01	k: 423605	n:500000
KS ci ratio: 1.842977e-01	ci left: 8.206962e-04	ci right 9.891735e-04	k: 451	n:500000
PCDHGA4   500000 perm   206 sec   (2429 perm/sec)   p_kst 9.020000e-04   p_cons 8.472100e-01   p_joint 3.202000e-03

Joint ci ratio: 9.690878e-02	ci left: 3.043017e-03	ci right 3.354826e-03	k: 1630	n:510000
Cons ci ratio: 2.330605e-03	ci left: 8.462705e-01	ci right 8.482471e-01	k: 432103	n:510000
KS ci ratio: 1.830871e-01	ci left: 8.158276e-04	ci right 9.820833e-04	k: 457	n:510000
PCDHGA4   510000 perm   212 sec   (2407 perm/sec)   p_kst 8.960784e-04   p_cons 8.472608e-01   p_joint 3.196078e-03

Joint ci ratio: 9.712106e-02	ci left: 2.971357e-03	ci right 3.276528e-03	k: 1623	n:520000
Cons ci ratio: 2.307600e-03	ci left: 8.463349e-01	ci right 8.482920e-01	k: 440604	n:520000
KS ci ratio: 1.817042e-01	ci left: 8.129855e-04	ci right 9.772727e-04	k: 464	n:520000
PCDHGA4   520000 perm   218 sec   (2380 perm/sec)   p_kst 8.923077e-04   p_cons 8.473154e-01   p_joint 3.121154e-03

Joint ci ratio: 9.782121e-02	ci left: 2.872949e-03	ci right 3.170261e-03	k: 1600	n:530000
Cons ci ratio: 2.285395e-03	ci left: 8.463817e-01	ci right 8.483201e-01	k: 449097	n:530000
KS ci ratio: 1.803521e-01	ci left: 8.102551e-04	ci right 9.726392e-04	k: 471	n:530000
PCDHGA4   530000 perm   225 sec   (2358 perm/sec)   p_kst 8.886792e-04   p_cons 8.473528e-01   p_joint 3.018868e-03

Joint ci ratio: 9.718674e-02	ci left: 2.857685e-03	ci right 3.151391e-03	k: 1621	n:540000
Cons ci ratio: 2.263658e-03	ci left: 8.464455e-01	ci right 8.483656e-01	k: 457600	n:540000
KS ci ratio: 1.788430e-01	ci left: 8.093991e-04	ci right 9.701075e-04	k: 479	n:540000
PCDHGA4   540000 perm   231 sec   (2336 perm/sec)   p_kst 8.870370e-04   p_cons 8.474074e-01   p_joint 3.001852e-03

Joint ci ratio: 9.764328e-02	ci left: 2.779114e-03	ci right 3.066162e-03	k: 1606	n:550000
Cons ci ratio: 2.244121e-03	ci left: 8.463230e-01	ci right 8.482261e-01	k: 466002	n:550000
KS ci ratio: 1.782877e-01	ci left: 7.998932e-04	ci right 9.581677e-04	k: 482	n:550000
PCDHGA4   550000 perm   238 sec   (2314 perm/sec)   p_kst 8.763636e-04   p_cons 8.472764e-01   p_joint 2.920000e-03

Joint ci ratio: 9.876147e-02	ci left: 2.666772e-03	ci right 2.945554e-03	k: 1570	n:560000
Cons ci ratio: 2.224957e-03	ci left: 8.462192e-01	ci right 8.481058e-01	k: 474412	n:560000
KS ci ratio: 1.761129e-01	ci left: 8.060878e-04	ci right 9.634353e-04	k: 494	n:560000
PCDHGA4   560000 perm   244 sec   (2293 perm/sec)   p_kst 8.821429e-04   p_cons 8.471643e-01   p_joint 2.803571e-03

Joint ci ratio: 9.882701e-02	ci left: 2.616561e-03	ci right 2.890286e-03	k: 1568	n:570000
Cons ci ratio: 2.205512e-03	ci left: 8.462088e-01	ci right 8.480789e-01	k: 482873	n:570000
KS ci ratio: 1.748809e-01	ci left: 8.036870e-04	ci right 9.593527e-04	k: 501	n:570000
PCDHGA4   570000 perm   251 sec   (2273 perm/sec)   p_kst 8.789474e-04   p_cons 8.471456e-01   p_joint 2.750877e-03

Joint ci ratio: 9.783400e-02	ci left: 2.625264e-03	ci right 2.896982e-03	k: 1600	n:580000
Cons ci ratio: 2.186583e-03	ci left: 8.461971e-01	ci right 8.480511e-01	k: 491333	n:580000
KS ci ratio: 1.731645e-01	ci left: 8.063209e-04	ci right 9.608036e-04	k: 511	n:580000
PCDHGA4   580000 perm   257 sec   (2253 perm/sec)   p_kst 8.810345e-04   p_cons 8.471259e-01   p_joint 2.758621e-03

Joint ci ratio: 9.870556e-02	ci left: 2.534471e-03	ci right 2.799263e-03	k: 1572	n:590000
Cons ci ratio: 2.167438e-03	ci left: 8.462692e-01	ci right 8.481071e-01	k: 499842	n:590000
KS ci ratio: 1.716623e-01	ci left: 8.072504e-04	ci right 9.604306e-04	k: 520	n:590000
PCDHGA4   590000 perm   264 sec   (2234 perm/sec)   p_kst 8.813559e-04   p_cons 8.471898e-01   p_joint 2.664407e-03

Joint ci ratio: 9.780789e-02	ci left: 2.539376e-03	ci right 2.802129e-03	k: 1601	n:600000
Cons ci ratio: 2.149894e-03	ci left: 8.462052e-01	ci right 8.480281e-01	k: 508271	n:600000
KS ci ratio: 1.698780e-01	ci left: 8.113462e-04	ci right 9.635394e-04	k: 531	n:600000
PCDHGA4   600000 perm   271 sec   (2214 perm/sec)   p_kst 8.850000e-04   p_cons 8.471183e-01   p_joint 2.668333e-03

Joint ci ratio: 9.720355e-02	ci left: 2.529733e-03	ci right 2.789780e-03	k: 1621	n:610000
Cons ci ratio: 2.132161e-03	ci left: 8.462174e-01	ci right 8.480252e-01	k: 516745	n:610000
KS ci ratio: 1.690859e-01	ci left: 8.058943e-04	ci right 9.562881e-04	k: 536	n:610000
PCDHGA4   610000 perm   278 sec   (2196 perm/sec)   p_kst 8.786885e-04   p_cons 8.471230e-01   p_joint 2.657377e-03

Joint ci ratio: 9.631664e-02	ci left: 2.536148e-03	ci right 2.794341e-03	k: 1651	n:620000
Cons ci ratio: 2.114464e-03	ci left: 8.462777e-01	ci right 8.480706e-01	k: 525249	n:620000
KS ci ratio: 1.678404e-01	ci left: 8.052552e-04	ci right 9.543108e-04	k: 544	n:620000
PCDHGA4   620000 perm   285 sec   (2176 perm/sec)   p_kst 8.774194e-04   p_cons 8.471758e-01   p_joint 2.662903e-03

Joint ci ratio: 9.545358e-02	ci left: 2.542369e-03	ci right 2.798746e-03	k: 1681	n:630000
Cons ci ratio: 2.097612e-03	ci left: 8.462853e-01	ci right 8.480639e-01	k: 533721	n:630000
KS ci ratio: 1.663213e-01	ci left: 8.076827e-04	ci right 9.556991e-04	k: 554	n:630000
PCDHGA4   630000 perm   292 sec   (2159 perm/sec)   p_kst 8.793651e-04   p_cons 8.471762e-01   p_joint 2.668254e-03

Joint ci ratio: 9.444750e-02	ci left: 2.557560e-03	ci right 2.812600e-03	k: 1717	n:640000
Cons ci ratio: 2.080542e-03	ci left: 8.463694e-01	ci right 8.481337e-01	k: 542242	n:640000
KS ci ratio: 1.639736e-01	ci left: 8.190298e-04	ci right 9.667981e-04	k: 570	n:640000
PCDHGA4   640000 perm   299 sec   (2141 perm/sec)   p_kst 8.906250e-04   p_cons 8.472531e-01   p_joint 2.682812e-03

Joint ci ratio: 9.398436e-02	ci left: 2.543749e-03	ci right 2.796100e-03	k: 1734	n:650000
Cons ci ratio: 2.064126e-03	ci left: 8.464202e-01	ci right 8.481706e-01	k: 550743	n:650000
KS ci ratio: 1.629779e-01	ci left: 8.167580e-04	ci right 9.631338e-04	k: 577	n:650000
PCDHGA4   650000 perm   306 sec   (2122 perm/sec)   p_kst 8.876923e-04   p_cons 8.472969e-01   p_joint 2.667692e-03

Joint ci ratio: 9.366207e-02	ci left: 2.522962e-03	ci right 2.772345e-03	k: 1746	n:660000
Cons ci ratio: 2.048381e-03	ci left: 8.464330e-01	ci right 8.481700e-01	k: 559220	n:660000
KS ci ratio: 1.617236e-01	ci left: 8.174652e-04	ci right 9.627308e-04	k: 586	n:660000
PCDHGA4   660000 perm   314 sec   (2105 perm/sec)   p_kst 8.878788e-04   p_cons 8.473030e-01   p_joint 2.645455e-03

Joint ci ratio: 9.415148e-02	ci left: 2.459067e-03	ci right 2.703474e-03	k: 1728	n:670000
Cons ci ratio: 2.033307e-03	ci left: 8.464050e-01	ci right 8.481293e-01	k: 567670	n:670000
KS ci ratio: 1.606328e-01	ci left: 8.167229e-04	ci right 9.607832e-04	k: 594	n:670000
PCDHGA4   670000 perm   321 sec   (2085 perm/sec)   p_kst 8.865672e-04   p_cons 8.472687e-01   p_joint 2.579104e-03

Joint ci ratio: 9.442743e-02	ci left: 2.408542e-03	ci right 2.648668e-03	k: 1718	n:680000
Cons ci ratio: 2.019329e-03	ci left: 8.462792e-01	ci right 8.479913e-01	k: 576053	n:680000
KS ci ratio: 1.592996e-01	ci left: 8.188295e-04	ci right 9.619480e-04	k: 604	n:680000
PCDHGA4   680000 perm   329 sec   (2069 perm/sec)   p_kst 8.882353e-04   p_cons 8.471368e-01   p_joint 2.526471e-03

Joint ci ratio: 8.370890e-02	ci left: 3.035464e-03	ci right 3.302067e-03	k: 2185	n:690000
Cons ci ratio: 2.004916e-03	ci left: 8.462501e-01	ci right 8.479499e-01	k: 584500	n:690000
KS ci ratio: 1.579991e-01	ci left: 8.208799e-04	ci right 9.630743e-04	k: 614	n:690000
PCDHGA4   690000 perm   336 sec   (2053 perm/sec)   p_kst 8.898551e-04   p_cons 8.471014e-01   p_joint 3.166667e-03

Joint ci ratio: 8.308405e-02	ci left: 3.038261e-03	ci right 3.303020e-03	k: 2218	n:700000
Cons ci ratio: 1.990489e-03	ci left: 8.462634e-01	ci right 8.479509e-01	k: 592976	n:700000
KS ci ratio: 1.566045e-01	ci left: 8.242489e-04	ci right 9.656483e-04	k: 625	n:700000
PCDHGA4   700000 perm   343 sec   (2038 perm/sec)   p_kst 8.928571e-04   p_cons 8.471086e-01   p_joint 3.168571e-03

Joint ci ratio: 8.335008e-02	ci left: 2.976156e-03	ci right 3.236375e-03	k: 2204	n:710000
Cons ci ratio: 1.976068e-03	ci left: 8.463158e-01	ci right 8.479912e-01	k: 601480	n:710000
KS ci ratio: 1.557364e-01	ci left: 8.221135e-04	ci right 9.622919e-04	k: 632	n:710000
PCDHGA4   710000 perm   351 sec   (2022 perm/sec)   p_kst 8.901408e-04   p_cons 8.471549e-01   p_joint 3.104225e-03

Joint ci ratio: 8.601421e-02	ci left: 2.752636e-03	ci right 3.001390e-03	k: 2070	n:720000
Cons ci ratio: 1.962598e-03	ci left: 8.462819e-01	ci right 8.479458e-01	k: 609923	n:720000
KS ci ratio: 1.542806e-01	ci left: 8.267156e-04	ci right 9.662392e-04	k: 644	n:720000
PCDHGA4   720000 perm   359 sec   (2007 perm/sec)   p_kst 8.944444e-04   p_cons 8.471153e-01   p_joint 2.875000e-03

Joint ci ratio: 8.539784e-02	ci left: 2.755144e-03	ci right 3.002252e-03	k: 2100	n:730000
Cons ci ratio: 1.948709e-03	ci left: 8.463410e-01	ci right 8.479932e-01	k: 618433	n:730000
KS ci ratio: 1.535683e-01	ci left: 8.232933e-04	ci right 9.615387e-04	k: 650	n:730000
PCDHGA4   730000 perm   367 sec   (1990 perm/sec)   p_kst 8.904110e-04   p_cons 8.471685e-01   p_joint 2.876712e-03

Joint ci ratio: 8.550159e-02	ci left: 2.711297e-03	ci right 2.954783e-03	k: 2095	n:740000
Cons ci ratio: 1.935221e-03	ci left: 8.463836e-01	ci right 8.480245e-01	k: 626932	n:740000
KS ci ratio: 1.528658e-01	ci left: 8.199648e-04	ci right 9.569638e-04	k: 656	n:740000
PCDHGA4   740000 perm   375 sec   (1975 perm/sec)   p_kst 8.864865e-04   p_cons 8.472054e-01   p_joint 2.831081e-03

Joint ci ratio: 8.527910e-02	ci left: 2.689499e-03	ci right 2.930367e-03	k: 2106	n:750000
Cons ci ratio: 1.922346e-03	ci left: 8.463797e-01	ci right 8.480096e-01	k: 635397	n:750000
KS ci ratio: 1.522878e-01	ci left: 8.154440e-04	ci right 9.511254e-04	k: 661	n:750000
PCDHGA4   750000 perm   383 sec   (1960 perm/sec)   p_kst 8.813333e-04   p_cons 8.471960e-01   p_joint 2.808000e-03

Joint ci ratio: 8.463858e-02	ci left: 2.695322e-03	ci right 2.934808e-03	k: 2138	n:760000
Cons ci ratio: 1.909453e-03	ci left: 8.464129e-01	ci right 8.480319e-01	k: 643890	n:760000
KS ci ratio: 1.517163e-01	ci left: 8.110430e-04	ci right 9.454398e-04	k: 666	n:760000
PCDHGA4   760000 perm   391 sec   (1944 perm/sec)   p_kst 8.763158e-04   p_cons 8.472237e-01   p_joint 2.813158e-03

Joint ci ratio: 8.450159e-02	ci left: 2.669215e-03	ci right 2.905979e-03	k: 2145	n:770000
Cons ci ratio: 1.897253e-03	ci left: 8.463853e-01	ci right 8.479939e-01	k: 652337	n:770000
KS ci ratio: 1.511512e-01	ci left: 8.067573e-04	ci right 9.399009e-04	k: 671	n:770000
PCDHGA4   770000 perm   399 sec   (1929 perm/sec)   p_kst 8.714286e-04   p_cons 8.471909e-01   p_joint 2.785714e-03

Joint ci ratio: 8.380118e-02	ci left: 2.680177e-03	ci right 2.915847e-03	k: 2181	n:780000
Cons ci ratio: 1.885163e-03	ci left: 8.463752e-01	ci right 8.479735e-01	k: 660797	n:780000
KS ci ratio: 1.499289e-01	ci left: 8.099857e-04	ci right 9.424842e-04	k: 682	n:780000
PCDHGA4   780000 perm   407 sec   (1915 perm/sec)   p_kst 8.743590e-04   p_cons 8.471756e-01   p_joint 2.796154e-03

Joint ci ratio: 8.361076e-02	ci left: 2.658643e-03	ci right 2.891862e-03	k: 2191	n:790000
Cons ci ratio: 1.872798e-03	ci left: 8.464351e-01	ci right 8.480231e-01	k: 669312	n:790000
KS ci ratio: 1.491666e-01	ci left: 8.082619e-04	ci right 9.397461e-04	k: 689	n:790000
PCDHGA4   790000 perm   416 sec   (1900 perm/sec)   p_kst 8.721519e-04   p_cons 8.472304e-01   p_joint 2.773418e-03

Joint ci ratio: 8.325119e-02	ci left: 2.648664e-03	ci right 2.879960e-03	k: 2210	n:800000
Cons ci ratio: 1.861248e-03	ci left: 8.464135e-01	ci right 8.479915e-01	k: 677763	n:800000
KS ci ratio: 1.487365e-01	ci left: 8.029721e-04	ci right 9.331857e-04	k: 693	n:800000
PCDHGA4   800000 perm   424 sec   (1887 perm/sec)   p_kst 8.662500e-04   p_cons 8.472038e-01   p_joint 2.762500e-03

Joint ci ratio: 8.382479e-02	ci left: 2.579697e-03	ci right 2.806599e-03	k: 2180	n:810000
Cons ci ratio: 1.849397e-03	ci left: 8.464641e-01	ci right 8.480322e-01	k: 686272	n:810000
KS ci ratio: 1.480979e-01	ci left: 8.001911e-04	ci right 9.293473e-04	k: 699	n:810000
PCDHGA4   810000 perm   433 sec   (1873 perm/sec)   p_kst 8.629630e-04   p_cons 8.472494e-01   p_joint 2.691358e-03

Joint ci ratio: 8.350051e-02	ci left: 2.568535e-03	ci right 2.793538e-03	k: 2197	n:820000
Cons ci ratio: 1.838730e-03	ci left: 8.463779e-01	ci right 8.479368e-01	k: 694670	n:820000
KS ci ratio: 1.469476e-01	ci left: 8.033523e-04	ci right 9.319231e-04	k: 710	n:820000
PCDHGA4   820000 perm   441 sec   (1859 perm/sec)   p_kst 8.658537e-04   p_cons 8.471585e-01   p_joint 2.679268e-03

Joint ci ratio: 8.295495e-02	ci left: 2.571801e-03	ci right 2.795547e-03	k: 2226	n:830000
Cons ci ratio: 1.827676e-03	ci left: 8.463746e-01	ci right 8.479241e-01	k: 703135	n:830000
KS ci ratio: 1.460263e-01	ci left: 8.041193e-04	ci right 9.319356e-04	k: 719	n:830000
PCDHGA4   830000 perm   450 sec   (1844 perm/sec)   p_kst 8.662651e-04   p_cons 8.471506e-01   p_joint 2.681928e-03

Joint ci ratio: 8.382884e-02	ci left: 2.487560e-03	ci right 2.706368e-03	k: 2180	n:840000
Cons ci ratio: 1.817144e-03	ci left: 8.463250e-01	ci right 8.478655e-01	k: 711561	n:840000
KS ci ratio: 1.454219e-01	ci left: 8.014288e-04	ci right 9.282444e-04	k: 725	n:840000
PCDHGA4   840000 perm   459 sec   (1831 perm/sec)   p_kst 8.630952e-04   p_cons 8.470964e-01   p_joint 2.595238e-03

Joint ci ratio: 8.425724e-02	ci left: 2.432954e-03	ci right 2.648106e-03	k: 2158	n:850000
Cons ci ratio: 1.806924e-03	ci left: 8.462577e-01	ci right 8.477894e-01	k: 719971	n:850000
KS ci ratio: 1.446273e-01	ci left: 8.010704e-04	ci right 9.270769e-04	k: 733	n:850000
PCDHGA4   850000 perm   468 sec   (1817 perm/sec)   p_kst 8.623529e-04   p_cons 8.470247e-01   p_joint 2.538824e-03

Joint ci ratio: 8.385065e-02	ci left: 2.428569e-03	ci right 2.642246e-03	k: 2179	n:860000
Cons ci ratio: 1.796712e-03	ci left: 8.462153e-01	ci right 8.477382e-01	k: 728401	n:860000
KS ci ratio: 1.442352e-01	ci left: 7.962386e-04	ci right 9.211163e-04	k: 737	n:860000
PCDHGA4   860000 perm   477 sec   (1804 perm/sec)   p_kst 8.569767e-04   p_cons 8.469779e-01   p_joint 2.533721e-03

Joint ci ratio: 8.337397e-02	ci left: 2.428789e-03	ci right 2.641212e-03	k: 2204	n:870000
Cons ci ratio: 1.786315e-03	ci left: 8.462257e-01	ci right 8.477398e-01	k: 736876	n:870000
KS ci ratio: 1.434598e-01	ci left: 7.959509e-04	ci right 9.200549e-04	k: 745	n:870000
PCDHGA4   870000 perm   486 sec   (1792 perm/sec)   p_kst 8.563218e-04   p_cons 8.469839e-01   p_joint 2.533333e-03

Joint ci ratio: 8.292397e-02	ci left: 2.427894e-03	ci right 2.639038e-03	k: 2228	n:880000
Cons ci ratio: 1.775894e-03	ci left: 8.462655e-01	ci right 8.477708e-01	k: 745377	n:880000
KS ci ratio: 1.426021e-01	ci left: 7.967673e-04	ci right 9.201927e-04	k: 754	n:880000
PCDHGA4   880000 perm   495 sec   (1778 perm/sec)   p_kst 8.568182e-04   p_cons 8.470193e-01   p_joint 2.531818e-03

Joint ci ratio: 8.375801e-02	ci left: 2.352203e-03	ci right 2.558922e-03	k: 2184	n:890000
Cons ci ratio: 1.765660e-03	ci left: 8.463033e-01	ci right 8.478000e-01	k: 753877	n:890000
KS ci ratio: 1.417597e-01	ci left: 7.975675e-04	ci right 9.203253e-04	k: 763	n:890000
PCDHGA4   890000 perm   504 sec   (1766 perm/sec)   p_kst 8.573034e-04   p_cons 8.470528e-01   p_joint 2.453933e-03

Joint ci ratio: 8.358676e-02	ci left: 2.335857e-03	ci right 2.540699e-03	k: 2193	n:900000
Cons ci ratio: 1.756249e-03	ci left: 8.462446e-01	ci right 8.477332e-01	k: 762291	n:900000
KS ci ratio: 1.412983e-01	ci left: 7.940644e-04	ci right 9.158517e-04	k: 768	n:900000
PCDHGA4   900000 perm   513 sec   (1753 perm/sec)   p_kst 8.533333e-04   p_cons 8.469900e-01   p_joint 2.436667e-03

Joint ci ratio: 7.656114e-02	ci left: 2.762525e-03	ci right 2.983515e-03	k: 2613	n:910000
Cons ci ratio: 1.746505e-03	ci left: 8.462587e-01	ci right 8.477391e-01	k: 770770	n:910000
KS ci ratio: 1.407505e-01	ci left: 7.916991e-04	ci right 9.126134e-04	k: 774	n:910000
PCDHGA4   910000 perm   523 sec   (1740 perm/sec)   p_kst 8.505495e-04   p_cons 8.470000e-01   p_joint 2.871429e-03

Joint ci ratio: 7.618331e-02	ci left: 2.760219e-03	ci right 2.979886e-03	k: 2639	n:920000
Cons ci ratio: 1.736565e-03	ci left: 8.463259e-01	ci right 8.477980e-01	k: 779298	n:920000
KS ci ratio: 1.401192e-01	ci left: 7.904350e-04	ci right 9.105696e-04	k: 781	n:920000
PCDHGA4   920000 perm   532 sec   (1729 perm/sec)   p_kst 8.489130e-04   p_cons 8.470630e-01   p_joint 2.868478e-03

Joint ci ratio: 7.569721e-02	ci left: 2.766404e-03	ci right 2.985098e-03	k: 2673	n:930000
Cons ci ratio: 1.727050e-03	ci left: 8.463529e-01	ci right 8.478169e-01	k: 787790	n:930000
KS ci ratio: 1.391438e-01	ci left: 7.933505e-04	ci right 9.130193e-04	k: 792	n:930000
PCDHGA4   930000 perm   541 sec   (1718 perm/sec)   p_kst 8.516129e-04   p_cons 8.470860e-01   p_joint 2.874194e-03

Joint ci ratio: 7.541606e-02	ci left: 2.757848e-03	ci right 2.975020e-03	k: 2693	n:940000
Cons ci ratio: 1.718092e-03	ci left: 8.463186e-01	ci right 8.477750e-01	k: 796225	n:940000
KS ci ratio: 1.387946e-01	ci left: 7.890179e-04	ci right 9.077097e-04	k: 796	n:940000
PCDHGA4   940000 perm   551 sec   (1707 perm/sec)   p_kst 8.468085e-04   p_cons 8.470479e-01   p_joint 2.864894e-03

Joint ci ratio: 7.523537e-02	ci left: 2.742244e-03	ci right 2.957647e-03	k: 2706	n:950000
Cons ci ratio: 1.708744e-03	ci left: 8.463652e-01	ci right 8.478137e-01	k: 804736	n:950000
KS ci ratio: 1.380175e-01	ci left: 7.898581e-04	ci right 9.079563e-04	k: 805	n:950000
PCDHGA4   950000 perm   560 sec   (1695 perm/sec)   p_kst 8.473684e-04   p_cons 8.470905e-01   p_joint 2.848421e-03

Joint ci ratio: 7.541831e-02	ci left: 2.700390e-03	ci right 2.913044e-03	k: 2693	n:960000
Cons ci ratio: 1.700169e-03	ci left: 8.463159e-01	ci right 8.477570e-01	k: 813156	n:960000
KS ci ratio: 1.373376e-01	ci left: 7.896767e-04	ci right 9.071187e-04	k: 813	n:960000
PCDHGA4   960000 perm   570 sec   (1684 perm/sec)   p_kst 8.468750e-04   p_cons 8.470375e-01   p_joint 2.805208e-03

Joint ci ratio: 7.588691e-02	ci left: 2.639171e-03	ci right 2.848352e-03	k: 2660	n:970000
Cons ci ratio: 1.691426e-03	ci left: 8.463130e-01	ci right 8.477467e-01	k: 821620	n:970000
KS ci ratio: 1.369180e-01	ci left: 7.865134e-04	ci right 9.030984e-04	k: 818	n:970000
PCDHGA4   970000 perm   580 sec   (1672 perm/sec)   p_kst 8.432990e-04   p_cons 8.470309e-01   p_joint 2.742268e-03

Joint ci ratio: 7.553302e-02	ci left: 2.637268e-03	ci right 2.845280e-03	k: 2685	n:980000
Cons ci ratio: 1.682749e-03	ci left: 8.463205e-01	ci right 8.477468e-01	k: 830094	n:980000
KS ci ratio: 1.362542e-01	ci left: 7.863721e-04	ci right 9.023252e-04	k: 826	n:980000
PCDHGA4   980000 perm   590 sec   (1661 perm/sec)   p_kst 8.428571e-04   p_cons 8.470347e-01   p_joint 2.739796e-03

Joint ci ratio: 7.007982e-02	ci left: 3.040072e-03	ci right 3.261841e-03	k: 3118	n:990000
Cons ci ratio: 1.674114e-03	ci left: 8.463420e-01	ci right 8.477610e-01	k: 838582	n:990000
KS ci ratio: 1.355187e-01	ci left: 7.872108e-04	ci right 9.026105e-04	k: 835	n:990000
PCDHGA4   990000 perm   600 sec   (1649 perm/sec)   p_kst 8.434343e-04   p_cons 8.470525e-01   p_joint 3.149495e-03

Joint ci ratio: 6.992368e-02	ci left: 3.023425e-03	ci right 3.243468e-03	k: 3132	n:1000000
Cons ci ratio: 1.665603e-03	ci left: 8.463641e-01	ci right 8.477759e-01	k: 847071	n:1000000
KS ci ratio: 1.349550e-01	ci left: 7.861018e-04	ci right 9.008211e-04	k: 842	n:1000000
PCDHGA4   1000000 perm   610 sec   (1639 perm/sec)   p_kst 8.420000e-04   p_cons 8.470710e-01   p_joint 3.132000e-03

Joint ci ratio: 6.961341e-02	ci left: 3.020729e-03	ci right 3.239561e-03	k: 3160	n:1010000
Cons ci ratio: 1.657373e-03	ci left: 8.463619e-01	ci right 8.477668e-01	k: 855536	n:1010000
KS ci ratio: 1.343192e-01	ci left: 7.859727e-04	ci right 9.000896e-04	k: 850	n:1010000
PCDHGA4   1010000 perm   621 sec   (1627 perm/sec)   p_kst 8.415842e-04   p_cons 8.470653e-01   p_joint 3.128713e-03

Joint ci ratio: 6.924193e-02	ci left: 3.023869e-03	ci right 3.241713e-03	k: 3194	n:1020000
Cons ci ratio: 1.649689e-03	ci left: 8.462930e-01	ci right 8.476913e-01	k: 863933	n:1020000
KS ci ratio: 1.337702e-01	ci left: 7.848996e-04	ci right 8.983579e-04	k: 857	n:1020000
PCDHGA4   1020000 perm   631 sec   (1617 perm/sec)   p_kst 8.401961e-04   p_cons 8.469931e-01   p_joint 3.131373e-03

Joint ci ratio: 6.917786e-02	ci left: 3.000234e-03	ci right 3.216167e-03	k: 3200	n:1030000
Cons ci ratio: 1.641753e-03	ci left: 8.462819e-01	ci right 8.476734e-01	k: 872388	n:1030000
KS ci ratio: 1.330741e-01	ci left: 7.857255e-04	ci right 8.986653e-04	k: 866	n:1030000
PCDHGA4   1030000 perm   641 sec   (1607 perm/sec)   p_kst 8.407767e-04   p_cons 8.469786e-01   p_joint 3.106796e-03

Joint ci ratio: 6.884530e-02	ci left: 3.000679e-03	ci right 3.215564e-03	k: 3231	n:1040000
Cons ci ratio: 1.634173e-03	ci left: 8.462325e-01	ci right 8.476175e-01	k: 880803	n:1040000
KS ci ratio: 1.325402e-01	ci left: 7.846775e-04	ci right 8.969786e-04	k: 873	n:1040000
PCDHGA4   1040000 perm   652 sec   (1596 perm/sec)   p_kst 8.394231e-04   p_cons 8.469260e-01   p_joint 3.106731e-03

Joint ci ratio: 6.950739e-02	ci left: 2.915007e-03	ci right 3.125845e-03	k: 3170	n:1050000
Cons ci ratio: 1.626398e-03	ci left: 8.462318e-01	ci right 8.476101e-01	k: 889268	n:1050000
KS ci ratio: 1.315651e-01	ci left: 7.891765e-04	ci right 9.012256e-04	k: 886	n:1050000
PCDHGA4   1050000 perm   662 sec   (1586 perm/sec)   p_kst 8.438095e-04   p_cons 8.469219e-01   p_joint 3.019048e-03

Joint ci ratio: 6.920260e-02	ci left: 2.913463e-03	ci right 3.123229e-03	k: 3198	n:1060000
Cons ci ratio: 1.618638e-03	ci left: 8.462462e-01	ci right 8.476180e-01	k: 897749	n:1060000
KS ci ratio: 1.311960e-01	ci left: 7.862933e-04	ci right 8.975955e-04	k: 891	n:1060000
PCDHGA4   1060000 perm   672 sec   (1577 perm/sec)   p_kst 8.405660e-04   p_cons 8.469330e-01   p_joint 3.016981e-03

Joint ci ratio: 7.058922e-02	ci left: 2.772365e-03	ci right 2.976135e-03	k: 3074	n:1070000
Cons ci ratio: 1.610931e-03	ci left: 8.462697e-01	ci right 8.476350e-01	k: 906240	n:1070000
KS ci ratio: 1.305391e-01	ci left: 7.870806e-04	ci right 8.978931e-04	k: 900	n:1070000
PCDHGA4   1070000 perm   683 sec   (1567 perm/sec)   p_kst 8.411215e-04   p_cons 8.469533e-01   p_joint 2.872897e-03

Joint ci ratio: 7.030413e-02	ci left: 2.769435e-03	ci right 2.972134e-03	k: 3099	n:1080000
Cons ci ratio: 1.603390e-03	ci left: 8.462835e-01	ci right 8.476424e-01	k: 914721	n:1080000
KS ci ratio: 1.300350e-01	ci left: 7.860630e-04	ci right 8.962719e-04	k: 907	n:1080000
PCDHGA4   1080000 perm   693 sec   (1558 perm/sec)   p_kst 8.398148e-04   p_cons 8.469639e-01   p_joint 2.869444e-03

Joint ci ratio: 7.068335e-02	ci left: 2.714283e-03	ci right 2.914061e-03	k: 3066	n:1090000
Cons ci ratio: 1.596315e-03	ci left: 8.462383e-01	ci right 8.475911e-01	k: 923138	n:1090000
KS ci ratio: 1.297498e-01	ci left: 7.824018e-04	ci right 8.918383e-04	k: 911	n:1090000
PCDHGA4   1090000 perm   704 sec   (1549 perm/sec)   p_kst 8.357798e-04   p_cons 8.469156e-01   p_joint 2.812844e-03

Joint ci ratio: 7.098662e-02	ci left: 2.666388e-03	ci right 2.863517e-03	k: 3040	n:1100000
Cons ci ratio: 1.588949e-03	ci left: 8.462567e-01	ci right 8.476033e-01	k: 931624	n:1100000
KS ci ratio: 1.295372e-01	ci left: 7.779278e-04	ci right 8.865465e-04	k: 914	n:1100000
PCDHGA4   1100000 perm   714 sec   (1540 perm/sec)   p_kst 8.309091e-04   p_cons 8.469309e-01   p_joint 2.763636e-03

Joint ci ratio: 6.759462e-02	ci left: 2.918593e-03	ci right 3.123654e-03	k: 3352	n:1110000
Cons ci ratio: 1.581794e-03	ci left: 8.462568e-01	ci right 8.475973e-01	k: 940090	n:1110000
KS ci ratio: 1.286959e-01	ci left: 7.813812e-04	ci right 8.897193e-04	k: 926	n:1110000
PCDHGA4   1110000 perm   725 sec   (1530 perm/sec)   p_kst 8.342342e-04   p_cons 8.469279e-01   p_joint 3.019820e-03

Joint ci ratio: 6.759554e-02	ci left: 2.892533e-03	ci right 3.095765e-03	k: 3352	n:1120000
Cons ci ratio: 1.574972e-03	ci left: 8.462175e-01	ci right 8.475522e-01	k: 948512	n:1120000
KS ci ratio: 1.280072e-01	ci left: 7.830465e-04	ci right 8.909904e-04	k: 936	n:1120000
PCDHGA4   1120000 perm   736 sec   (1522 perm/sec)   p_kst 8.357143e-04   p_cons 8.468857e-01   p_joint 2.992857e-03

Joint ci ratio: 6.734509e-02	ci left: 2.888685e-03	ci right 3.090867e-03	k: 3377	n:1130000
Cons ci ratio: 1.568207e-03	ci left: 8.461842e-01	ci right 8.475131e-01	k: 956940	n:1130000
KS ci ratio: 1.274642e-01	ci left: 7.829703e-04	ci right 8.904113e-04	k: 944	n:1130000
PCDHGA4   1130000 perm   747 sec   (1513 perm/sec)   p_kst 8.353982e-04   p_cons 8.468496e-01   p_joint 2.988496e-03

Joint ci ratio: 6.733598e-02	ci left: 2.864207e-03	ci right 3.064647e-03	k: 3378	n:1140000
Cons ci ratio: 1.561569e-03	ci left: 8.461445e-01	ci right 8.474677e-01	k: 965360	n:1140000
KS ci ratio: 1.269948e-01	ci left: 7.820470e-04	ci right 8.889364e-04	k: 951	n:1140000
PCDHGA4   1140000 perm   758 sec   (1504 perm/sec)   p_kst 8.342105e-04   p_cons 8.468070e-01   p_joint 2.963158e-03

Joint ci ratio: 6.471900e-02	ci left: 3.077061e-03	ci right 3.283714e-03	k: 3656	n:1150000
Cons ci ratio: 1.554677e-03	ci left: 8.461622e-01	ci right 8.474796e-01	k: 973845	n:1150000
KS ci ratio: 1.263329e-01	ci left: 7.836668e-04	ci right 8.901775e-04	k: 961	n:1150000
PCDHGA4   1150000 perm   769 sec   (1495 perm/sec)   p_kst 8.356522e-04   p_cons 8.468217e-01   p_joint 3.179130e-03

Joint ci ratio: 6.526823e-02	ci left: 2.998799e-03	ci right 3.201970e-03	k: 3595	n:1160000
Cons ci ratio: 1.547947e-03	ci left: 8.461674e-01	ci right 8.474791e-01	k: 982316	n:1160000
KS ci ratio: 1.259409e-01	ci left: 7.819202e-04	ci right 8.878391e-04	k: 967	n:1160000
PCDHGA4   1160000 perm   780 sec   (1486 perm/sec)   p_kst 8.336207e-04   p_cons 8.468241e-01   p_joint 3.099138e-03

Joint ci ratio: 6.497074e-02	ci left: 3.000915e-03	ci right 3.203267e-03	k: 3628	n:1170000
Cons ci ratio: 1.541314e-03	ci left: 8.461709e-01	ci right 8.474770e-01	k: 990785	n:1170000
KS ci ratio: 1.254237e-01	ci left: 7.818597e-04	ci right 8.873032e-04	k: 975	n:1170000
PCDHGA4   1170000 perm   792 sec   (1478 perm/sec)   p_kst 8.333333e-04   p_cons 8.468248e-01   p_joint 3.100855e-03

Joint ci ratio: 6.472162e-02	ci left: 2.998827e-03	ci right 3.200234e-03	k: 3656	n:1180000
Cons ci ratio: 1.534885e-03	ci left: 8.461539e-01	ci right 8.474545e-01	k: 999230	n:1180000
KS ci ratio: 1.250401e-01	ci left: 7.801592e-04	ci right 8.850277e-04	k: 981	n:1180000
PCDHGA4   1180000 perm   803 sec   (1469 perm/sec)   p_kst 8.313559e-04   p_cons 8.468051e-01   p_joint 3.098305e-03

Joint ci ratio: 6.498142e-02	ci left: 2.949650e-03	ci right 3.148579e-03	k: 3627	n:1190000
Cons ci ratio: 1.528616e-03	ci left: 8.461238e-01	ci right 8.474190e-01	k: 1007659	n:1190000
KS ci ratio: 1.247865e-01	ci left: 7.768595e-04	ci right 8.810569e-04	k: 985	n:1190000
PCDHGA4   1190000 perm   814 sec   (1461 perm/sec)   p_kst 8.277311e-04   p_cons 8.467723e-01   p_joint 3.047899e-03

Joint ci ratio: 6.472330e-02	ci left: 2.948844e-03	ci right 3.146900e-03	k: 3656	n:1200000
Cons ci ratio: 1.522340e-03	ci left: 8.461084e-01	ci right 8.473983e-01	k: 1016105	n:1200000
KS ci ratio: 1.242833e-01	ci left: 7.768447e-04	ci right 8.805890e-04	k: 993	n:1200000
PCDHGA4   1200000 perm   826 sec   (1453 perm/sec)   p_kst 8.275000e-04   p_cons 8.467542e-01   p_joint 3.046667e-03

Joint ci ratio: 6.448578e-02	ci left: 2.946427e-03	ci right 3.143567e-03	k: 3683	n:1210000
Cons ci ratio: 1.516058e-03	ci left: 8.461073e-01	ci right 8.473918e-01	k: 1024568	n:1210000
KS ci ratio: 1.239721e-01	ci left: 7.744283e-04	ci right 8.775720e-04	k: 998	n:1210000
PCDHGA4   1210000 perm   838 sec   (1445 perm/sec)   p_kst 8.247934e-04   p_cons 8.467504e-01   p_joint 3.043802e-03

Joint ci ratio: 6.430301e-02	ci left: 2.939212e-03	ci right 3.135291e-03	k: 3704	n:1220000
Cons ci ratio: 1.509643e-03	ci left: 8.461424e-01	ci right 8.474215e-01	k: 1033075	n:1220000
KS ci ratio: 1.232339e-01	ci left: 7.776126e-04	ci right 8.805187e-04	k: 1010	n:1220000
PCDHGA4   1220000 perm   849 sec   (1437 perm/sec)   p_kst 8.278689e-04   p_cons 8.467828e-01   p_joint 3.036066e-03

Joint ci ratio: 6.415635e-02	ci left: 2.928914e-03	ci right 3.123844e-03	k: 3721	n:1230000
Cons ci ratio: 1.503771e-03	ci left: 8.460971e-01	ci right 8.473712e-01	k: 1041484	n:1230000
KS ci ratio: 1.228700e-01	ci left: 7.760184e-04	ci right 8.783882e-04	k: 1016	n:1230000
PCDHGA4   1230000 perm   861 sec   (1429 perm/sec)   p_kst 8.260163e-04   p_cons 8.467350e-01   p_joint 3.025203e-03

Joint ci ratio: 6.424375e-02	ci left: 2.897357e-03	ci right 3.090459e-03	k: 3711	n:1240000
Cons ci ratio: 1.497757e-03	ci left: 8.460889e-01	ci right 8.473579e-01	k: 1049938	n:1240000
KS ci ratio: 1.222702e-01	ci left: 7.775775e-04	ci right 8.796160e-04	k: 1026	n:1240000
PCDHGA4   1240000 perm   873 sec   (1421 perm/sec)   p_kst 8.274194e-04   p_cons 8.467242e-01   p_joint 2.992742e-03

Joint ci ratio: 6.443632e-02	ci left: 2.856860e-03	ci right 3.047855e-03	k: 3689	n:1250000
Cons ci ratio: 1.491778e-03	ci left: 8.460872e-01	ci right 8.473511e-01	k: 1058400	n:1250000
KS ci ratio: 1.216792e-01	ci left: 7.791128e-04	ci right 8.808230e-04	k: 1036	n:1250000
PCDHGA4   1250000 perm   885 sec   (1413 perm/sec)   p_kst 8.288000e-04   p_cons 8.467200e-01   p_joint 2.951200e-03

Joint ci ratio: 6.421059e-02	ci left: 2.854489e-03	ci right 3.044632e-03	k: 3715	n:1260000
Cons ci ratio: 1.486039e-03	ci left: 8.460562e-01	ci right 8.473152e-01	k: 1066825	n:1260000
KS ci ratio: 1.211545e-01	ci left: 7.798553e-04	ci right 8.811921e-04	k: 1045	n:1260000
PCDHGA4   1260000 perm   897 sec   (1405 perm/sec)   p_kst 8.293651e-04   p_cons 8.466865e-01   p_joint 2.948413e-03

Joint ci ratio: 6.470214e-02	ci left: 2.788626e-03	ci right 2.975857e-03	k: 3659	n:1270000
Cons ci ratio: 1.480126e-03	ci left: 8.460675e-01	ci right 8.473215e-01	k: 1075303	n:1270000
KS ci ratio: 1.208087e-01	ci left: 7.782961e-04	ci right 8.791209e-04	k: 1051	n:1270000
PCDHGA4   1270000 perm   909 sec   (1398 perm/sec)   p_kst 8.275591e-04   p_cons 8.466953e-01   p_joint 2.881102e-03

Joint ci ratio: 6.449994e-02	ci left: 2.784518e-03	ci right 2.970867e-03	k: 3682	n:1280000
Cons ci ratio: 1.474604e-03	ci left: 8.460223e-01	ci right 8.472715e-01	k: 1083709	n:1280000
KS ci ratio: 1.202952e-01	ci left: 7.790349e-04	ci right 8.794959e-04	k: 1060	n:1280000
PCDHGA4   1280000 perm   921 sec   (1390 perm/sec)   p_kst 8.281250e-04   p_cons 8.466477e-01   p_joint 2.876563e-03

Joint ci ratio: 6.427354e-02	ci left: 2.782763e-03	ci right 2.968317e-03	k: 3708	n:1290000
Cons ci ratio: 1.469112e-03	ci left: 8.459832e-01	ci right 8.472277e-01	k: 1092122	n:1290000
KS ci ratio: 1.200129e-01	ci left: 7.767553e-04	ci right 8.766706e-04	k: 1065	n:1290000
PCDHGA4   1290000 perm   933 sec   (1382 perm/sec)   p_kst 8.255814e-04   p_cons 8.466062e-01   p_joint 2.874419e-03

Joint ci ratio: 6.409255e-02	ci left: 2.777252e-03	ci right 2.961897e-03	k: 3729	n:1300000
Cons ci ratio: 1.463316e-03	ci left: 8.460094e-01	ci right 8.472490e-01	k: 1100619	n:1300000
KS ci ratio: 1.198446e-01	ci left: 7.730186e-04	ci right 8.723040e-04	k: 1068	n:1300000
PCDHGA4   1300000 perm   946 sec   (1375 perm/sec)   p_kst 8.215385e-04   p_cons 8.466300e-01   p_joint 2.868462e-03

Joint ci ratio: 6.414501e-02	ci left: 2.751543e-03	ci right 2.934635e-03	k: 3723	n:1310000
Cons ci ratio: 1.457850e-03	ci left: 8.459886e-01	ci right 8.472236e-01	k: 1109055	n:1310000
KS ci ratio: 1.191222e-01	ci left: 7.767449e-04	ci right 8.758652e-04	k: 1081	n:1310000
PCDHGA4   1310000 perm   958 sec   (1367 perm/sec)   p_kst 8.251908e-04   p_cons 8.466069e-01   p_joint 2.841985e-03

Joint ci ratio: 6.388815e-02	ci left: 2.753062e-03	ci right 2.935494e-03	k: 3753	n:1320000
Cons ci ratio: 1.452330e-03	ci left: 8.459886e-01	ci right 8.472189e-01	k: 1117518	n:1320000
KS ci ratio: 1.186298e-01	ci left: 7.774759e-04	ci right 8.762506e-04	k: 1090	n:1320000
PCDHGA4   1320000 perm   970 sec   (1360 perm/sec)   p_kst 8.257576e-04   p_cons 8.466045e-01   p_joint 2.843182e-03

Joint ci ratio: 6.365967e-02	ci left: 2.752339e-03	ci right 2.934047e-03	k: 3780	n:1330000
Cons ci ratio: 1.446839e-03	ci left: 8.459947e-01	ci right 8.472203e-01	k: 1125989	n:1330000
KS ci ratio: 1.180898e-01	ci left: 7.789265e-04	ci right 8.774035e-04	k: 1100	n:1330000
PCDHGA4   1330000 perm   983 sec   (1354 perm/sec)   p_kst 8.270677e-04   p_cons 8.466083e-01   p_joint 2.842105e-03

Joint ci ratio: 6.341692e-02	ci left: 2.753097e-03	ci right 2.934137e-03	k: 3809	n:1340000
Cons ci ratio: 1.441481e-03	ci left: 8.459880e-01	ci right 8.472090e-01	k: 1134443	n:1340000
KS ci ratio: 1.176101e-01	ci left: 7.796320e-04	ci right 8.777701e-04	k: 1109	n:1340000
PCDHGA4   1340000 perm   995 sec   (1347 perm/sec)   p_kst 8.276119e-04   p_cons 8.465993e-01   p_joint 2.842537e-03

Joint ci ratio: 6.099291e-02	ci left: 2.957314e-03	ci right 3.144087e-03	k: 4117	n:1350000
Cons ci ratio: 1.436005e-03	ci left: 8.460132e-01	ci right 8.472297e-01	k: 1142940	n:1350000
KS ci ratio: 1.172410e-01	ci left: 7.788898e-04	ci right 8.766055e-04	k: 1116	n:1350000
PCDHGA4   1350000 perm   1008 sec   (1340 perm/sec)   p_kst 8.266667e-04   p_cons 8.466222e-01   p_joint 3.049630e-03

Joint ci ratio: 5.784468e-02	ci left: 3.268073e-03	ci right 3.463463e-03	k: 4576	n:1360000
Cons ci ratio: 1.430486e-03	ci left: 8.460573e-01	ci right 8.472692e-01	k: 1151463	n:1360000
KS ci ratio: 1.166678e-01	ci left: 7.810144e-04	ci right 8.784845e-04	k: 1127	n:1360000
PCDHGA4   1360000 perm   1020 sec   (1333 perm/sec)   p_kst 8.286765e-04   p_cons 8.466640e-01   p_joint 3.364706e-03

Joint ci ratio: 5.778209e-02	ci left: 3.251411e-03	ci right 3.445588e-03	k: 4586	n:1370000
Cons ci ratio: 1.425178e-03	ci left: 8.460737e-01	ci right 8.472811e-01	k: 1159949	n:1370000
KS ci ratio: 1.160520e-01	ci left: 7.838178e-04	ci right 8.810861e-04	k: 1139	n:1370000
PCDHGA4   1370000 perm   1033 sec   (1326 perm/sec)   p_kst 8.313869e-04   p_cons 8.466781e-01   p_joint 3.347445e-03

Joint ci ratio: 5.771970e-02	ci left: 3.234991e-03	ci right 3.427972e-03	k: 4596	n:1380000
Cons ci ratio: 1.419913e-03	ci left: 8.460927e-01	ci right 8.472957e-01	k: 1168439	n:1380000
KS ci ratio: 1.156470e-01	ci left: 7.837671e-04	ci right 8.806665e-04	k: 1147	n:1380000
PCDHGA4   1380000 perm   1045 sec   (1320 perm/sec)   p_kst 8.311594e-04   p_cons 8.466949e-01   p_joint 3.330435e-03

Joint ci ratio: 5.758232e-02	ci left: 3.227317e-03	ci right 3.419366e-03	k: 4618	n:1390000
Cons ci ratio: 1.414945e-03	ci left: 8.460676e-01	ci right 8.472662e-01	k: 1176868	n:1390000
KS ci ratio: 1.150967e-01	ci left: 7.858138e-04	ci right 8.824726e-04	k: 1158	n:1390000
PCDHGA4   1390000 perm   1058 sec   (1314 perm/sec)   p_kst 8.330935e-04   p_cons 8.466676e-01   p_joint 3.322302e-03

Joint ci ratio: 5.760177e-02	ci left: 3.202152e-03	ci right 3.392770e-03	k: 4615	n:1400000
Cons ci ratio: 1.409784e-03	ci left: 8.460878e-01	ci right 8.472822e-01	k: 1185360	n:1400000
KS ci ratio: 1.145053e-01	ci left: 7.885262e-04	ci right 8.849866e-04	k: 1170	n:1400000
PCDHGA4   1400000 perm   1072 sec   (1306 perm/sec)   p_kst 8.357143e-04   p_cons 8.466857e-01   p_joint 3.296429e-03

Joint ci ratio: 5.791165e-02	ci left: 3.145189e-03	ci right 3.333457e-03	k: 4566	n:1410000
Cons ci ratio: 1.404553e-03	ci left: 8.461313e-01	ci right 8.473212e-01	k: 1193885	n:1410000
KS ci ratio: 1.142618e-01	ci left: 7.863784e-04	ci right 8.823577e-04	k: 1175	n:1410000
PCDHGA4   1410000 perm   1085 sec   (1300 perm/sec)   p_kst 8.333333e-04   p_cons 8.467270e-01   p_joint 3.238298e-03

Joint ci ratio: 5.769095e-02	ci left: 3.147331e-03	ci right 3.334986e-03	k: 4601	n:1420000
Cons ci ratio: 1.399508e-03	ci left: 8.461501e-01	ci right 8.473358e-01	k: 1202376	n:1420000
KS ci ratio: 1.138751e-01	ci left: 7.863136e-04	ci right 8.819384e-04	k: 1183	n:1420000
PCDHGA4   1420000 perm   1098 sec   (1293 perm/sec)   p_kst 8.330986e-04   p_cons 8.467437e-01   p_joint 3.240141e-03

Joint ci ratio: 5.813687e-02	ci left: 3.077076e-03	ci right 3.262008e-03	k: 4531	n:1430000
Cons ci ratio: 1.394837e-03	ci left: 8.461092e-01	ci right 8.472908e-01	k: 1210782	n:1430000
KS ci ratio: 1.134924e-01	ci left: 7.862502e-04	ci right 8.815244e-04	k: 1191	n:1430000
PCDHGA4   1430000 perm   1111 sec   (1288 perm/sec)   p_kst 8.328671e-04   p_cons 8.467007e-01   p_joint 3.168531e-03

Joint ci ratio: 5.825368e-02	ci left: 3.043388e-03	ci right 3.226675e-03	k: 4513	n:1440000
Cons ci ratio: 1.389766e-03	ci left: 8.461522e-01	ci right 8.473297e-01	k: 1219308	n:1440000
KS ci ratio: 1.131135e-01	ci left: 7.861883e-04	ci right 8.811156e-04	k: 1199	n:1440000
PCDHGA4   1440000 perm   1123 sec   (1282 perm/sec)   p_kst 8.326389e-04   p_cons 8.467417e-01   p_joint 3.134028e-03

Joint ci ratio: 5.823490e-02	ci left: 3.024437e-03	ci right 3.206522e-03	k: 4516	n:1450000
Cons ci ratio: 1.385056e-03	ci left: 8.461374e-01	ci right 8.473108e-01	k: 1227751	n:1450000
KS ci ratio: 1.128787e-01	ci left: 7.841171e-04	ci right 8.785847e-04	k: 1204	n:1450000
PCDHGA4   1450000 perm   1137 sec   (1276 perm/sec)   p_kst 8.303448e-04   p_cons 8.467248e-01   p_joint 3.114483e-03

Joint ci ratio: 5.824846e-02	ci left: 3.002371e-03	ci right 3.183171e-03	k: 4514	n:1460000
Cons ci ratio: 1.380381e-03	ci left: 8.461249e-01	ci right 8.472943e-01	k: 1236197	n:1460000
KS ci ratio: 1.125523e-01	ci left: 7.834057e-04	ci right 8.774967e-04	k: 1211	n:1460000
PCDHGA4   1460000 perm   1150 sec   (1270 perm/sec)   p_kst 8.294521e-04   p_cons 8.467103e-01   p_joint 3.091781e-03

Joint ci ratio: 5.803672e-02	ci left: 3.004070e-03	ci right 3.184292e-03	k: 4547	n:1470000
Cons ci ratio: 1.375588e-03	ci left: 8.461438e-01	ci right 8.473092e-01	k: 1244689	n:1470000
KS ci ratio: 1.119990e-01	ci left: 7.860105e-04	ci right 8.799197e-04	k: 1223	n:1470000
PCDHGA4   1470000 perm   1163 sec   (1264 perm/sec)   p_kst 8.319728e-04   p_cons 8.467272e-01   p_joint 3.093197e-03

Joint ci ratio: 5.785260e-02	ci left: 3.003082e-03	ci right 3.182655e-03	k: 4576	n:1480000
Cons ci ratio: 1.370895e-03	ci left: 8.461531e-01	ci right 8.473145e-01	k: 1253167	n:1480000
KS ci ratio: 1.117256e-01	ci left: 7.846402e-04	ci right 8.781417e-04	k: 1229	n:1480000
PCDHGA4   1480000 perm   1176 sec   (1258 perm/sec)   p_kst 8.304054e-04   p_cons 8.467345e-01   p_joint 3.091892e-03

Joint ci ratio: 5.787858e-02	ci left: 2.980281e-03	ci right 3.158572e-03	k: 4572	n:1490000
Cons ci ratio: 1.366094e-03	ci left: 8.461918e-01	ci right 8.473492e-01	k: 1261689	n:1490000
KS ci ratio: 1.110950e-01	ci left: 7.885084e-04	ci right 8.819057e-04	k: 1243	n:1490000
PCDHGA4   1490000 perm   1190 sec   (1253 perm/sec)   p_kst 8.342282e-04   p_cons 8.467711e-01   p_joint 3.068456e-03

Joint ci ratio: 5.839374e-02	ci left: 2.907851e-03	ci right 3.083410e-03	k: 4492	n:1500000
Cons ci ratio: 1.361549e-03	ci left: 8.461906e-01	ci right 8.473441e-01	k: 1270152	n:1500000
KS ci ratio: 1.107395e-01	ci left: 7.884371e-04	ci right 8.815076e-04	k: 1251	n:1500000
PCDHGA4   1500000 perm   1204 sec   (1246 perm/sec)   p_kst 8.340000e-04   p_cons 8.467680e-01   p_joint 2.994667e-03

Joint ci ratio: 5.821913e-02	ci left: 2.906214e-03	ci right 3.081132e-03	k: 4519	n:1510000
Cons ci ratio: 1.356807e-03	ci left: 8.462358e-01	ci right 8.473854e-01	k: 1278685	n:1510000
KS ci ratio: 1.105191e-01	ci left: 7.864352e-04	ci right 8.790727e-04	k: 1256	n:1510000
PCDHGA4   1510000 perm   1217 sec   (1240 perm/sec)   p_kst 8.317881e-04   p_cons 8.468113e-01   p_joint 2.992715e-03

Joint ci ratio: 5.823910e-02	ci left: 2.885148e-03	ci right 3.058860e-03	k: 4516	n:1520000
Cons ci ratio: 1.352344e-03	ci left: 8.462363e-01	ci right 8.473821e-01	k: 1287151	n:1520000
KS ci ratio: 1.101691e-01	ci left: 7.863792e-04	ci right 8.786977e-04	k: 1264	n:1520000
PCDHGA4   1520000 perm   1232 sec   (1234 perm/sec)   p_kst 8.315789e-04   p_cons 8.468099e-01   p_joint 2.971053e-03

Joint ci ratio: 5.827850e-02	ci left: 2.862426e-03	ci right 3.034889e-03	k: 4510	n:1530000
Cons ci ratio: 1.348138e-03	ci left: 8.461956e-01	ci right 8.473378e-01	k: 1295554	n:1530000
KS ci ratio: 1.097793e-01	ci left: 7.869600e-04	ci right 8.789987e-04	k: 1273	n:1530000
PCDHGA4   1530000 perm   1245 sec   (1229 perm/sec)   p_kst 8.320261e-04   p_cons 8.467673e-01   p_joint 2.947712e-03

Joint ci ratio: 5.814348e-02	ci left: 2.857276e-03	ci right 3.029017e-03	k: 4531	n:1540000
Cons ci ratio: 1.343870e-03	ci left: 8.461749e-01	ci right 8.473134e-01	k: 1303987	n:1540000
KS ci ratio: 1.093509e-01	ci left: 7.881655e-04	ci right 8.799622e-04	k: 1283	n:1540000
PCDHGA4   1540000 perm   1259 sec   (1223 perm/sec)   p_kst 8.331169e-04   p_cons 8.467448e-01   p_joint 2.942208e-03

Joint ci ratio: 5.802857e-02	ci left: 2.850286e-03	ci right 3.021257e-03	k: 4549	n:1550000
Cons ci ratio: 1.339510e-03	ci left: 8.461803e-01	ci right 8.473152e-01	k: 1312460	n:1550000
KS ci ratio: 1.091811e-01	ci left: 7.855906e-04	ci right 8.769363e-04	k: 1287	n:1550000
PCDHGA4   1550000 perm   1273 sec   (1217 perm/sec)   p_kst 8.303226e-04   p_cons 8.467484e-01   p_joint 2.934839e-03

Joint ci ratio: 5.788892e-02	ci left: 2.845913e-03	ci right 3.016197e-03	k: 4571	n:1560000
Cons ci ratio: 1.335363e-03	ci left: 8.461523e-01	ci right 8.472836e-01	k: 1320881	n:1560000
KS ci ratio: 1.089699e-01	ci left: 7.836724e-04	ci right 8.746075e-04	k: 1292	n:1560000
PCDHGA4   1560000 perm   1287 sec   (1212 perm/sec)   p_kst 8.282051e-04   p_cons 8.467186e-01   p_joint 2.930128e-03

Joint ci ratio: 5.769363e-02	ci left: 2.847246e-03	ci right 3.017016e-03	k: 4602	n:1570000
Cons ci ratio: 1.330950e-03	ci left: 8.461840e-01	ci right 8.473116e-01	k: 1329395	n:1570000
KS ci ratio: 1.084260e-01	ci left: 7.867361e-04	ci right 8.775419e-04	k: 1305	n:1570000
PCDHGA4   1570000 perm   1301 sec   (1207 perm/sec)   p_kst 8.312102e-04   p_cons 8.467484e-01   p_joint 2.931210e-03

Joint ci ratio: 5.776974e-02	ci left: 2.821739e-03	ci right 2.990218e-03	k: 4590	n:1580000
Cons ci ratio: 1.326549e-03	ci left: 8.462216e-01	ci right 8.473455e-01	k: 1337919	n:1580000
KS ci ratio: 1.079312e-01	ci left: 7.891463e-04	ci right 8.797881e-04	k: 1317	n:1580000
PCDHGA4   1580000 perm   1315 sec   (1202 perm/sec)   p_kst 8.335443e-04   p_cons 8.467842e-01   p_joint 2.905063e-03

Joint ci ratio: 5.763195e-02	ci left: 2.817629e-03	ci right 2.985448e-03	k: 4612	n:1590000
Cons ci ratio: 1.322457e-03	ci left: 8.462065e-01	ci right 8.473269e-01	k: 1346360	n:1590000
KS ci ratio: 1.077272e-01	ci left: 7.872429e-04	ci right 8.774844e-04	k: 1322	n:1590000
PCDHGA4   1590000 perm   1329 sec   (1196 perm/sec)   p_kst 8.314465e-04   p_cons 8.467673e-01   p_joint 2.900629e-03

Joint ci ratio: 5.773927e-02	ci left: 2.789546e-03	ci right 2.956012e-03	k: 4595	n:1600000
Cons ci ratio: 1.318301e-03	ci left: 8.462115e-01	ci right 8.473284e-01	k: 1354833	n:1600000
KS ci ratio: 1.074029e-01	ci left: 7.871881e-04	ci right 8.771346e-04	k: 1330	n:1600000
PCDHGA4   1600000 perm   1343 sec   (1191 perm/sec)   p_kst 8.312500e-04   p_cons 8.467706e-01   p_joint 2.871875e-03

Joint ci ratio: 5.758918e-02	ci left: 2.786911e-03	ci right 2.952773e-03	k: 4619	n:1610000
Cons ci ratio: 1.314136e-03	ci left: 8.462259e-01	ci right 8.473393e-01	k: 1363321	n:1610000
KS ci ratio: 1.070816e-01	ci left: 7.871344e-04	ci right 8.767887e-04	k: 1338	n:1610000
PCDHGA4   1610000 perm   1359 sec   (1185 perm/sec)   p_kst 8.310559e-04   p_cons 8.467832e-01   p_joint 2.868944e-03

Joint ci ratio: 5.739690e-02	ci left: 2.788569e-03	ci right 2.953957e-03	k: 4650	n:1620000
Cons ci ratio: 1.309924e-03	ci left: 8.462574e-01	ci right 8.473673e-01	k: 1371837	n:1620000
KS ci ratio: 1.066049e-01	ci left: 7.894850e-04	ci right 8.789816e-04	k: 1350	n:1620000
PCDHGA4   1620000 perm   1373 sec   (1180 perm/sec)   p_kst 8.333333e-04   p_cons 8.468130e-01   p_joint 2.870370e-03

Joint ci ratio: 5.721879e-02	ci left: 2.788998e-03	ci right 2.953881e-03	k: 4679	n:1630000
Cons ci ratio: 1.305885e-03	ci left: 8.462621e-01	ci right 8.473686e-01	k: 1380310	n:1630000
KS ci ratio: 1.062515e-01	ci left: 7.900161e-04	ci right 8.792575e-04	k: 1359	n:1630000
PCDHGA4   1630000 perm   1387 sec   (1175 perm/sec)   p_kst 8.337423e-04   p_cons 8.468160e-01   p_joint 2.870552e-03

Joint ci ratio: 5.708489e-02	ci left: 2.785214e-03	ci right 2.949476e-03	k: 4701	n:1640000
Cons ci ratio: 1.301983e-03	ci left: 8.462466e-01	ci right 8.473497e-01	k: 1388750	n:1640000
KS ci ratio: 1.060569e-01	ci left: 7.881667e-04	ci right 8.770259e-04	k: 1364	n:1640000
PCDHGA4   1640000 perm   1401 sec   (1170 perm/sec)   p_kst 8.317073e-04   p_cons 8.467988e-01   p_joint 2.866463e-03

Joint ci ratio: 5.694588e-02	ci left: 2.782075e-03	ci right 2.945738e-03	k: 4724	n:1650000
Cons ci ratio: 1.298138e-03	ci left: 8.462271e-01	ci right 8.473269e-01	k: 1397183	n:1650000
KS ci ratio: 1.059020e-01	ci left: 7.857499e-04	ci right 8.741991e-04	k: 1368	n:1650000
PCDHGA4   1650000 perm   1415 sec   (1166 perm/sec)   p_kst 8.290909e-04   p_cons 8.467776e-01   p_joint 2.863030e-03

Joint ci ratio: 5.683790e-02	ci left: 2.776004e-03	ci right 2.938991e-03	k: 4742	n:1660000
Cons ci ratio: 1.294122e-03	ci left: 8.462488e-01	ci right 8.473452e-01	k: 1405684	n:1660000
KS ci ratio: 1.055172e-01	ci left: 7.868813e-04	ci right 8.751162e-04	k: 1378	n:1660000
PCDHGA4   1660000 perm   1431 sec   (1160 perm/sec)   p_kst 8.301205e-04   p_cons 8.467976e-01   p_joint 2.856627e-03

Joint ci ratio: 5.375981e-02	ci left: 3.088319e-03	ci right 3.259519e-03	k: 5299	n:1670000
Cons ci ratio: 1.290260e-03	ci left: 8.462468e-01	ci right 8.473400e-01	k: 1414146	n:1670000
KS ci ratio: 1.052505e-01	ci left: 7.862506e-04	ci right 8.741780e-04	k: 1385	n:1670000
PCDHGA4   1670000 perm   1445 sec   (1156 perm/sec)   p_kst 8.293413e-04   p_cons 8.467940e-01   p_joint 3.173054e-03

Joint ci ratio: 5.358817e-02	ci left: 3.089903e-03	ci right 3.260627e-03	k: 5333	n:1680000
Cons ci ratio: 1.286355e-03	ci left: 8.462604e-01	ci right 8.473503e-01	k: 1422634	n:1680000
KS ci ratio: 1.049480e-01	ci left: 7.862072e-04	ci right 8.738616e-04	k: 1393	n:1680000
PCDHGA4   1680000 perm   1460 sec   (1151 perm/sec)   p_kst 8.291667e-04   p_cons 8.468060e-01   p_joint 3.174405e-03

Joint ci ratio: 5.344813e-02	ci left: 3.087966e-03	ci right 3.258123e-03	k: 5361	n:1690000
Cons ci ratio: 1.282634e-03	ci left: 8.462436e-01	ci right 8.473303e-01	k: 1431071	n:1690000
KS ci ratio: 1.047230e-01	ci left: 7.850123e-04	ci right 8.723342e-04	k: 1399	n:1690000
PCDHGA4   1690000 perm   1474 sec   (1146 perm/sec)   p_kst 8.278107e-04   p_cons 8.467876e-01   p_joint 3.172189e-03

Joint ci ratio: 5.327944e-02	ci left: 3.089534e-03	ci right 3.259224e-03	k: 5395	n:1700000
Cons ci ratio: 1.278960e-03	ci left: 8.462241e-01	ci right 8.473077e-01	k: 1439503	n:1700000
KS ci ratio: 1.044250e-01	ci left: 7.849774e-04	ci right 8.720317e-04	k: 1407	n:1700000
PCDHGA4   1700000 perm   1489 sec   (1142 perm/sec)   p_kst 8.276471e-04   p_cons 8.467665e-01   p_joint 3.173529e-03

Joint ci ratio: 5.346913e-02	ci left: 3.049540e-03	ci right 3.217647e-03	k: 5357	n:1710000
Cons ci ratio: 1.275315e-03	ci left: 8.462054e-01	ci right 8.472858e-01	k: 1447936	n:1710000
KS ci ratio: 1.040929e-01	ci left: 7.855128e-04	ci right 8.723325e-04	k: 1416	n:1710000
PCDHGA4   1710000 perm   1504 sec   (1137 perm/sec)   p_kst 8.280702e-04   p_cons 8.467462e-01   p_joint 3.132749e-03

Joint ci ratio: 5.434655e-02	ci left: 2.933726e-03	ci right 3.098187e-03	k: 5186	n:1720000
Cons ci ratio: 1.271734e-03	ci left: 8.461799e-01	ci right 8.472573e-01	k: 1456357	n:1720000
KS ci ratio: 1.038368e-01	ci left: 7.849098e-04	ci right 8.714364e-04	k: 1423	n:1720000
PCDHGA4   1720000 perm   1519 sec   (1132 perm/sec)   p_kst 8.273256e-04   p_cons 8.467192e-01   p_joint 3.015116e-03

Joint ci ratio: 5.448416e-02	ci left: 2.901943e-03	ci right 3.065046e-03	k: 5160	n:1730000
Cons ci ratio: 1.268110e-03	ci left: 8.461698e-01	ci right 8.472441e-01	k: 1464804	n:1730000
KS ci ratio: 1.035101e-01	ci left: 7.854402e-04	ci right 8.717363e-04	k: 1432	n:1730000
PCDHGA4   1730000 perm   1534 sec   (1128 perm/sec)   p_kst 8.277457e-04   p_cons 8.467075e-01   p_joint 2.982659e-03

Joint ci ratio: 5.505460e-02	ci left: 2.825176e-03	ci right 2.985681e-03	k: 5054	n:1740000
Cons ci ratio: 1.264422e-03	ci left: 8.461794e-01	ci right 8.472505e-01	k: 1473285	n:1740000
KS ci ratio: 1.032224e-01	ci left: 7.854050e-04	ci right 8.714428e-04	k: 1440	n:1740000
PCDHGA4   1740000 perm   1550 sec   (1123 perm/sec)   p_kst 8.275862e-04   p_cons 8.467155e-01   p_joint 2.904598e-03

Joint ci ratio: 5.492445e-02	ci left: 2.822558e-03	ci right 2.982522e-03	k: 5078	n:1750000
Cons ci ratio: 1.260993e-03	ci left: 8.461419e-01	ci right 8.472101e-01	k: 1481684	n:1750000
KS ci ratio: 1.030796e-01	ci left: 7.831437e-04	ci right 8.688079e-04	k: 1444	n:1750000
PCDHGA4   1750000 perm   1565 sec   (1118 perm/sec)   p_kst 8.251429e-04   p_cons 8.466766e-01   p_joint 2.901714e-03

Joint ci ratio: 5.517605e-02	ci left: 2.780743e-03	ci right 2.939082e-03	k: 5032	n:1760000
Cons ci ratio: 1.257328e-03	ci left: 8.461595e-01	ci right 8.472246e-01	k: 1490179	n:1760000
KS ci ratio: 1.029018e-01	ci left: 7.814617e-04	ci right 8.667856e-04	k: 1449	n:1760000
PCDHGA4   1760000 perm   1580 sec   (1114 perm/sec)   p_kst 8.232955e-04   p_cons 8.466926e-01   p_joint 2.859091e-03

Joint ci ratio: 5.505050e-02	ci left: 2.777847e-03	ci right 2.935651e-03	k: 5055	n:1770000
Cons ci ratio: 1.253801e-03	ci left: 8.461548e-01	ci right 8.472169e-01	k: 1498635	n:1770000
KS ci ratio: 1.026191e-01	ci left: 7.814503e-04	ci right 8.665244e-04	k: 1457	n:1770000
PCDHGA4   1770000 perm   1595 sec   (1109 perm/sec)   p_kst 8.231638e-04   p_cons 8.466864e-01   p_joint 2.855932e-03

Joint ci ratio: 5.489329e-02	ci left: 2.778310e-03	ci right 2.935674e-03	k: 5084	n:1780000
Cons ci ratio: 1.250269e-03	ci left: 8.461575e-01	ci right 8.472166e-01	k: 1507104	n:1780000
KS ci ratio: 1.022689e-01	ci left: 7.825341e-04	ci right 8.674181e-04	k: 1467	n:1780000
PCDHGA4   1780000 perm   1611 sec   (1105 perm/sec)   p_kst 8.241573e-04   p_cons 8.466876e-01   p_joint 2.856180e-03

Joint ci ratio: 5.478041e-02	ci left: 2.774359e-03	ci right 2.931167e-03	k: 5105	n:1790000
Cons ci ratio: 1.246787e-03	ci left: 8.461557e-01	ci right 8.472119e-01	k: 1515565	n:1790000
KS ci ratio: 1.021300e-01	ci left: 7.803399e-04	ci right 8.648640e-04	k: 1471	n:1790000
PCDHGA4   1790000 perm   1627 sec   (1100 perm/sec)   p_kst 8.217877e-04   p_cons 8.466844e-01   p_joint 2.851955e-03

Joint ci ratio: 5.467891e-02	ci left: 2.769357e-03	ci right 2.925583e-03	k: 5124	n:1800000
Cons ci ratio: 1.243385e-03	ci left: 8.461434e-01	ci right 8.471966e-01	k: 1524007	n:1800000
KS ci ratio: 1.019226e-01	ci left: 7.792530e-04	ci right 8.634776e-04	k: 1477	n:1800000
PCDHGA4   1800000 perm   1644 sec   (1095 perm/sec)   p_kst 8.205556e-04   p_cons 8.466706e-01   p_joint 2.846667e-03

Joint ci ratio: 5.446131e-02	ci left: 2.776400e-03	ci right 2.932380e-03	k: 5165	n:1810000
Cons ci ratio: 1.239934e-03	ci left: 8.461472e-01	ci right 8.471975e-01	k: 1532478	n:1810000
KS ci ratio: 1.016136e-01	ci left: 7.797935e-04	ci right 8.638058e-04	k: 1486	n:1810000
PCDHGA4   1810000 perm   1659 sec   (1091 perm/sec)   p_kst 8.209945e-04   p_cons 8.466729e-01   p_joint 2.853591e-03

Joint ci ratio: 5.433531e-02	ci left: 2.774152e-03	ci right 2.929634e-03	k: 5189	n:1820000
Cons ci ratio: 1.236638e-03	ci left: 8.461246e-01	ci right 8.471721e-01	k: 1540901	n:1820000
KS ci ratio: 1.014093e-01	ci left: 7.787219e-04	ci right 8.624401e-04	k: 1492	n:1820000
PCDHGA4   1820000 perm   1678 sec   (1085 perm/sec)   p_kst 8.197802e-04   p_cons 8.466489e-01   p_joint 2.851099e-03

Joint ci ratio: 5.419976e-02	ci left: 2.773008e-03	ci right 2.928026e-03	k: 5215	n:1830000
Cons ci ratio: 1.233328e-03	ci left: 8.461104e-01	ci right 8.471551e-01	k: 1549339	n:1830000
KS ci ratio: 1.011387e-01	ci left: 7.787275e-04	ci right 8.622095e-04	k: 1500	n:1830000
PCDHGA4   1830000 perm   1695 sec   (1080 perm/sec)   p_kst 8.196721e-04   p_cons 8.466333e-01   p_joint 2.849727e-03

Joint ci ratio: 5.404454e-02	ci left: 2.774021e-03	ci right 2.928637e-03	k: 5245	n:1840000
Cons ci ratio: 1.229883e-03	ci left: 8.461307e-01	ci right 8.471725e-01	k: 1557840	n:1840000
KS ci ratio: 1.008703e-01	ci left: 7.787333e-04	ci right 8.619812e-04	k: 1508	n:1840000
PCDHGA4   1840000 perm   1711 sec   (1075 perm/sec)   p_kst 8.195652e-04   p_cons 8.466522e-01   p_joint 2.850543e-03

Joint ci ratio: 5.390089e-02	ci left: 2.773957e-03	ci right 2.928146e-03	k: 5273	n:1850000
Cons ci ratio: 1.226374e-03	ci left: 8.461703e-01	ci right 8.472092e-01	k: 1566377	n:1850000
KS ci ratio: 1.005045e-01	ci left: 7.803201e-04	ci right 8.634175e-04	k: 1519	n:1850000
PCDHGA4   1850000 perm   1728 sec   (1071 perm/sec)   p_kst 8.210811e-04   p_cons 8.466903e-01   p_joint 2.850270e-03

Joint ci ratio: 5.376856e-02	ci left: 2.772834e-03	ci right 2.926570e-03	k: 5299	n:1860000
Cons ci ratio: 1.223108e-03	ci left: 8.461642e-01	ci right 8.472003e-01	k: 1574830	n:1860000
KS ci ratio: 1.003397e-01	ci left: 7.787455e-04	ci right 8.615311e-04	k: 1524	n:1860000
PCDHGA4   1860000 perm   1744 sec   (1067 perm/sec)   p_kst 8.193548e-04   p_cons 8.466828e-01   p_joint 2.848925e-03

Joint ci ratio: 5.432689e-02	ci left: 2.701029e-03	ci right 2.852389e-03	k: 5191	n:1870000
Cons ci ratio: 1.219788e-03	ci left: 8.461753e-01	ci right 8.472086e-01	k: 1583315	n:1870000
KS ci ratio: 1.000449e-01	ci left: 7.792733e-04	ci right 8.618574e-04	k: 1533	n:1870000
PCDHGA4   1870000 perm   1761 sec   (1062 perm/sec)   p_kst 8.197861e-04   p_cons 8.466925e-01   p_joint 2.775936e-03

Joint ci ratio: 5.416538e-02	ci left: 2.702928e-03	ci right 2.853929e-03	k: 5222	n:1880000
Cons ci ratio: 1.216607e-03	ci left: 8.461624e-01	ci right 8.471930e-01	k: 1591755	n:1880000
KS ci ratio: 9.972037e-02	ci left: 7.803145e-04	ci right 8.627250e-04	k: 1543	n:1880000
PCDHGA4   1880000 perm   1777 sec   (1058 perm/sec)   p_kst 8.207447e-04   p_cons 8.466782e-01   p_joint 2.777660e-03

Outputting figure to mutsig2_images.part000000000127/PCDHGA4.5_2854_1880000_0.00082074_0.84668_0.0027777.png
                gene_name: PCDHGA4
               theta_stop: 0.100 
                    nperm: 1880000 
                     p_ks: 0.00082 
        ci_ks_bounds_left: 0.00078 
       ci_ks_bounds_right: 0.00086 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.0028 
     ci_joint_bounds_left: 0.0027 
    ci_joint_bounds_right: 0.0029 

Current progress: 48 percent done.
PCDHGA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.251787e-01	ci left: 8.368370e-02	ci right 9.495688e-02	k: 892	n:10000
Cons ci ratio: 2.221280e-01	ci left: 2.683859e-02	ci right 3.363872e-02	k: 301	n:10000
KS ci ratio: 4.302484e-02	ci left: 4.437074e-01	ci right 4.633197e-01	k: 4535	n:10000
PCDHGA5   10000 perm   2 sec   (5488 perm/sec)   p_kst 4.535000e-01   p_cons 3.010000e-02   p_joint 8.920000e-02

Joint ci ratio: 8.656147e-02	ci left: 8.896023e-02	ci right 9.705854e-02	k: 1859	n:20000
Cons ci ratio: 1.515943e-01	ci left: 2.989297e-02	ci right 3.484421e-02	k: 646	n:20000
KS ci ratio: 3.026359e-02	ci left: 4.492290e-01	ci right 4.630838e-01	k: 9123	n:20000
PCDHGA5   20000 perm   4 sec   (4933 perm/sec)   p_kst 4.561500e-01   p_cons 3.230000e-02   p_joint 9.295000e-02

Joint ci ratio: 6.591140e-02	ci left: 1.019798e-01	ci right 1.089635e-01	k: 3163	n:30000
Cons ci ratio: 1.230259e-01	ci left: 3.071616e-02	ci right 3.477499e-02	k: 981	n:30000
KS ci ratio: 2.500250e-02	ci left: 4.446918e-01	ci right 4.559845e-01	k: 13510	n:30000
PCDHGA5   30000 perm   6 sec   (4728 perm/sec)   p_kst 4.503333e-01   p_cons 3.270000e-02   p_joint 1.054333e-01

Joint ci ratio: 6.665880e-02	ci left: 7.691630e-02	ci right 8.224492e-02	k: 3182	n:40000
Cons ci ratio: 1.046314e-01	ci left: 3.212354e-02	ci right 3.569454e-02	k: 1355	n:40000
KS ci ratio: 2.164364e-02	ci left: 4.456654e-01	ci right 4.554418e-01	k: 18022	n:40000
PCDHGA5   40000 perm   9 sec   (4586 perm/sec)   p_kst 4.505500e-01   p_cons 3.387500e-02   p_joint 7.955000e-02

Joint ci ratio: 6.155666e-02	ci left: 7.270604e-02	ci right 7.734345e-02	k: 3750	n:50000
Cons ci ratio: 9.364263e-02	ci left: 3.227221e-02	ci right 3.546221e-02	k: 1692	n:50000
KS ci ratio: 1.963765e-02	ci left: 4.391189e-01	ci right 4.478477e-01	k: 22174	n:50000
PCDHGA5   50000 perm   11 sec   (4477 perm/sec)   p_kst 4.434800e-01   p_cons 3.384000e-02   p_joint 7.500000e-02

Outputting figure to mutsig2_images.part000000000127/PCDHGA5.5_2831_50000_0.44348_0.03384_0.075.png
                gene_name: PCDHGA5
               theta_stop: 0.094 
                    nperm: 50000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.034 
      ci_cons_bounds_left: 0.032 
     ci_cons_bounds_right: 0.035 
                  p_joint: 0.075 
     ci_joint_bounds_left: 0.073 
    ci_joint_bounds_right: 0.077 

Current progress: 49 percent done.
PCDHGA7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.278700e-01	ci left: 8.038196e-02	ci right 9.146065e-02	k: 858	n:10000
Cons ci ratio: 3.464415e-02	ci left: 5.516076e-01	ci right 5.711566e-01	k: 5614	n:10000
KS ci ratio: 1.564030e-01	ci left: 5.446081e-02	ci right 6.379808e-02	k: 590	n:10000
PCDHGA7   10000 perm   2 sec   (5707 perm/sec)   p_kst 5.900000e-02   p_cons 5.614000e-01   p_joint 8.580000e-02

Joint ci ratio: 7.576212e-02	ci left: 1.135597e-01	ci right 1.225517e-01	k: 2360	n:20000
Cons ci ratio: 2.467571e-02	ci left: 5.509340e-01	ci right 5.647492e-01	k: 11157	n:20000
KS ci ratio: 1.120129e-01	ci left: 5.445922e-02	ci right 6.097011e-02	k: 1153	n:20000
PCDHGA7   20000 perm   4 sec   (5129 perm/sec)   p_kst 5.765000e-02   p_cons 5.578500e-01   p_joint 1.180000e-01

Joint ci ratio: 5.724689e-02	ci left: 1.312836e-01	ci right 1.390538e-01	k: 4054	n:30000
Cons ci ratio: 2.076177e-02	ci left: 5.373424e-01	ci right 5.486492e-01	k: 16290	n:30000
KS ci ratio: 9.157119e-02	ci left: 5.492461e-02	ci right 6.022814e-02	k: 1726	n:30000
PCDHGA7   30000 perm   6 sec   (4902 perm/sec)   p_kst 5.753333e-02   p_cons 5.430000e-01   p_joint 1.351333e-01

Outputting figure to mutsig2_images.part000000000127/PCDHGA7.5_2845_30000_0.057533_0.543_0.13513.png
                gene_name: PCDHGA7
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.058 
        ci_ks_bounds_left: 0.055 
       ci_ks_bounds_right: 0.060 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 51 percent done.
PCDHGB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.465244e-02	ci left: 3.303159e-01	ci right 3.489775e-01	k: 3396	n:10000
Cons ci ratio: 1.480595e-01	ci left: 6.063148e-02	ci right 7.042348e-02	k: 654	n:10000
KS ci ratio: 2.206455e-02	ci left: 7.508973e-01	ci right 7.677513e-01	k: 7594	n:10000
PCDHGB4   10000 perm   2 sec   (5422 perm/sec)   p_kst 7.594000e-01   p_cons 6.540000e-02   p_joint 3.396000e-01

Joint ci ratio: 6.273022e-02	ci left: 1.582014e-01	ci right 1.684967e-01	k: 3266	n:20000
Cons ci ratio: 1.073971e-01	ci left: 5.908656e-02	ci right 6.584133e-02	k: 1248	n:20000
KS ci ratio: 1.578558e-02	ci left: 7.490784e-01	ci right 7.610474e-01	k: 15102	n:20000
PCDHGB4   20000 perm   4 sec   (4906 perm/sec)   p_kst 7.551000e-01   p_cons 6.240000e-02   p_joint 1.633000e-01

Joint ci ratio: 5.223890e-02	ci left: 1.538892e-01	ci right 1.621771e-01	k: 4740	n:30000
Cons ci ratio: 9.126319e-02	ci left: 5.528338e-02	ci right 6.060264e-02	k: 1737	n:30000
KS ci ratio: 1.293652e-02	ci left: 7.488170e-01	ci right 7.586005e-01	k: 22612	n:30000
PCDHGB4   30000 perm   6 sec   (4697 perm/sec)   p_kst 7.537333e-01   p_cons 5.790000e-02   p_joint 1.580000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHGB4.5_2801_30000_0.75373_0.0579_0.158.png
                gene_name: PCDHGB4
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.058 
      ci_cons_bounds_left: 0.055 
     ci_cons_bounds_right: 0.061 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 52 percent done.
PCM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.778304e-02	ci left: 6.562561e-01	ci right 6.748474e-01	k: 6656	n:10000
Cons ci ratio: 4.757356e-02	ci left: 3.946604e-01	ci right 4.139954e-01	k: 4043	n:10000
KS ci ratio: 3.861067e-02	ci left: 4.976503e-01	ci right 5.173453e-01	k: 5075	n:10000
PCM1   10000 perm   2 sec   (4461 perm/sec)   p_kst 5.075000e-01   p_cons 4.043000e-01   p_joint 6.656000e-01

Outputting figure to mutsig2_images.part000000000127/PCM1.5_6223_10000_0.5075_0.4043_0.6656.png
                gene_name: PCM1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.67 

Current progress: 54 percent done.
PCNXL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.902580e-02	ci left: 3.803239e-01	ci right 3.995402e-01	k: 3899	n:10000
Cons ci ratio: 9.230038e-02	ci left: 1.457019e-01	ci right 1.599010e-01	k: 1527	n:10000
KS ci ratio: 2.786419e-02	ci left: 6.549475e-01	ci right 6.735567e-01	k: 6643	n:10000
PCNXL3   10000 perm   2 sec   (4508 perm/sec)   p_kst 6.643000e-01   p_cons 1.527000e-01   p_joint 3.899000e-01

Outputting figure to mutsig2_images.part000000000127/PCNXL3.5_6245_10000_0.6643_0.1527_0.3899.png
                gene_name: PCNXL3
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 55 percent done.
PCSK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.618316e-02	ci left: 2.510282e-01	ci right 2.683120e-01	k: 2596	n:10000
Cons ci ratio: 1.034263e-01	ci left: 1.190667e-01	ci right 1.321523e-01	k: 1255	n:10000
KS ci ratio: 8.104105e-02	ci left: 1.818601e-01	ci right 1.973212e-01	k: 1895	n:10000
PCSK1   10000 perm   2 sec   (5344 perm/sec)   p_kst 1.895000e-01   p_cons 1.255000e-01   p_joint 2.596000e-01

Joint ci ratio: 6.013080e-02	ci left: 1.699541e-01	ci right 1.805404e-01	k: 3504	n:20000
Cons ci ratio: 7.306820e-02	ci left: 1.211844e-01	ci right 1.304247e-01	k: 2515	n:20000
KS ci ratio: 5.700881e-02	ci left: 1.857207e-01	ci right 1.966692e-01	k: 3823	n:20000
PCSK1   20000 perm   4 sec   (4819 perm/sec)   p_kst 1.911500e-01   p_cons 1.257500e-01   p_joint 1.752000e-01

Outputting figure to mutsig2_images.part000000000127/PCSK1.5_2361_20000_0.19115_0.12575_0.1752.png
                gene_name: PCSK1
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 57 percent done.
PCSK6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.335471e-02	ci left: 1.734975e-01	ci right 1.886888e-01	k: 1810	n:10000
Cons ci ratio: 8.925190e-02	ci left: 1.544350e-01	ci right 1.689626e-01	k: 1616	n:10000
KS ci ratio: 7.827576e-02	ci left: 1.925924e-01	ci right 2.083825e-01	k: 2004	n:10000
PCSK6   10000 perm   2 sec   (5532 perm/sec)   p_kst 2.004000e-01   p_cons 1.616000e-01   p_joint 1.810000e-01

Outputting figure to mutsig2_images.part000000000127/PCSK6.5_3475_10000_0.2004_0.1616_0.181.png
                gene_name: PCSK6
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.19 

Current progress: 58 percent done.
PCDHA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.049311e-02	ci left: 4.738613e-01	ci right 4.935482e-01	k: 4837	n:10000
Cons ci ratio: 1.771708e-02	ci left: 8.228987e-01	ci right 8.377084e-01	k: 8304	n:10000
KS ci ratio: 5.094380e-02	ci left: 3.623163e-01	ci right 3.813585e-01	k: 3718	n:10000
PCDHA5   10000 perm   2 sec   (5265 perm/sec)   p_kst 3.718000e-01   p_cons 8.304000e-01   p_joint 4.837000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHA5.4_2926_10000_0.3718_0.8304_0.4837.png
                gene_name: PCDHA5
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 59 percent done.
PCDHAC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.745367e-02	ci left: 5.128549e-01	ci right 5.325319e-01	k: 5227	n:10000
Cons ci ratio: 2.989034e-02	ci left: 6.227620e-01	ci right 6.417609e-01	k: 6323	n:10000
KS ci ratio: 6.035235e-02	ci left: 2.876580e-01	ci right 3.056606e-01	k: 2966	n:10000
PCDHAC1   10000 perm   2 sec   (5415 perm/sec)   p_kst 2.966000e-01   p_cons 6.323000e-01   p_joint 5.227000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHAC1.4_2932_10000_0.2966_0.6323_0.5227.png
                gene_name: PCDHAC1
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 61 percent done.
PCDHAC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.387659e-02	ci left: 4.340298e-01	ci right 4.536029e-01	k: 4438	n:10000
Cons ci ratio: 1.051569e-01	ci left: 1.155484e-01	ci right 1.284727e-01	k: 1219	n:10000
KS ci ratio: 1.146199e-02	ci left: 9.158488e-01	ci right 9.265043e-01	k: 9213	n:10000
PCDHAC2   10000 perm   2 sec   (5279 perm/sec)   p_kst 9.213000e-01   p_cons 1.219000e-01   p_joint 4.438000e-01

Joint ci ratio: 2.567162e-02	ci left: 5.313106e-01	ci right 5.451782e-01	k: 10765	n:20000
Cons ci ratio: 7.486609e-02	ci left: 1.160187e-01	ci right 1.250920e-01	k: 2410	n:20000
KS ci ratio: 7.128471e-03	ci left: 9.345687e-01	ci right 9.413033e-01	k: 18760	n:20000
PCDHAC2   20000 perm   4 sec   (4794 perm/sec)   p_kst 9.380000e-01   p_cons 1.205000e-01   p_joint 5.382500e-01

Outputting figure to mutsig2_images.part000000000127/PCDHAC2.4_3128_20000_0.938_0.1205_0.53825.png
                gene_name: PCDHAC2
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 62 percent done.
PCDHB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.119962e-02	ci left: 1.812696e-01	ci right 1.967120e-01	k: 1889	n:10000
Cons ci ratio: 1.139871e-02	ci left: 9.166731e-01	ci right 9.272795e-01	k: 9221	n:10000
KS ci ratio: 1.314164e-01	ci left: 7.630693e-02	ci right 8.713821e-02	k: 816	n:10000
PCDHB1   10000 perm   2 sec   (5548 perm/sec)   p_kst 8.160000e-02   p_cons 9.221000e-01   p_joint 1.889000e-01

Joint ci ratio: 6.087983e-02	ci left: 1.664471e-01	ci right 1.769485e-01	k: 3433	n:20000
Cons ci ratio: 8.208742e-03	ci left: 9.155410e-01	ci right 9.231365e-01	k: 18388	n:20000
KS ci ratio: 9.082502e-02	ci left: 8.131738e-02	ci right 8.910371e-02	k: 1703	n:20000
PCDHB1   20000 perm   4 sec   (4999 perm/sec)   p_kst 8.515000e-02   p_cons 9.194000e-01   p_joint 1.716500e-01

Outputting figure to mutsig2_images.part000000000127/PCDHB1.4_2461_20000_0.08515_0.9194_0.17165.png
                gene_name: PCDHB1
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.085 
        ci_ks_bounds_left: 0.081 
       ci_ks_bounds_right: 0.089 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 64 percent done.
PCDHGA12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.537790e-02	ci left: 1.375651e-01	ci right 1.514427e-01	k: 1444	n:10000
Cons ci ratio: 2.185407e-03	ci left: 9.957201e-01	ci right 9.979750e-01	k: 9970	n:10000
KS ci ratio: 1.900600e-01	ci left: 3.691153e-02	ci right 4.475883e-02	k: 407	n:10000
PCDHGA12   10000 perm   2 sec   (5422 perm/sec)   p_kst 4.070000e-02   p_cons 9.970000e-01   p_joint 1.444000e-01

Joint ci ratio: 9.473848e-02	ci left: 7.510243e-02	ci right 8.262055e-02	k: 1576	n:20000
Cons ci ratio: 1.428617e-03	ci left: 9.965918e-01	ci right 9.980576e-01	k: 19948	n:20000
KS ci ratio: 1.343100e-01	ci left: 3.810025e-02	ci right 4.363424e-02	k: 816	n:20000
PCDHGA12   20000 perm   4 sec   (4873 perm/sec)   p_kst 4.080000e-02   p_cons 9.974000e-01   p_joint 7.880000e-02

Joint ci ratio: 6.672768e-02	ci left: 9.971369e-02	ci right 1.066300e-01	k: 3094	n:30000
Cons ci ratio: 1.147974e-03	ci left: 9.968302e-01	ci right 9.980035e-01	k: 29924	n:30000
KS ci ratio: 1.072904e-01	ci left: 4.030997e-02	ci right 4.491247e-02	k: 1277	n:30000
PCDHGA12   30000 perm   6 sec   (4665 perm/sec)   p_kst 4.256667e-02   p_cons 9.974667e-01   p_joint 1.031333e-01

Joint ci ratio: 5.785582e-02	ci left: 9.996362e-02	ci right 1.059442e-01	k: 4117	n:40000
Cons ci ratio: 1.000647e-03	ci left: 9.968779e-01	ci right 9.978977e-01	k: 39897	n:40000
KS ci ratio: 9.320256e-02	ci left: 4.037279e-02	ci right 4.434399e-02	k: 1693	n:40000
PCDHGA12   40000 perm   9 sec   (4524 perm/sec)   p_kst 4.232500e-02   p_cons 9.974250e-01   p_joint 1.029250e-01

Outputting figure to mutsig2_images.part000000000127/PCDHGA12.4_2852_40000_0.042325_0.99743_0.10293.png
                gene_name: PCDHGA12
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.042 
        ci_ks_bounds_left: 0.040 
       ci_ks_bounds_right: 0.044 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.100 
    ci_joint_bounds_right: 0.11 

Current progress: 65 percent done.
PCDHGA9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.412956e-02	ci left: 7.163357e-01	ci right 7.339330e-01	k: 7252	n:10000
Cons ci ratio: 8.407617e-03	ci left: 9.518996e-01	ci right 9.600321e-01	k: 9561	n:10000
KS ci ratio: 4.747495e-02	ci left: 3.956563e-01	ci right 4.149989e-01	k: 4053	n:10000
PCDHGA9   10000 perm   2 sec   (5368 perm/sec)   p_kst 4.053000e-01   p_cons 9.561000e-01   p_joint 7.252000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHGA9.4_2877_10000_0.4053_0.9561_0.7252.png
                gene_name: PCDHGA9
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 67 percent done.
PCDHGB7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.075338e-02	ci left: 4.706645e-01	ci right 4.903468e-01	k: 4805	n:10000
KS ci ratio: 1.618433e-02	ci left: 8.473340e-01	ci right 8.612589e-01	k: 8544	n:10000
PCDHGB7   10000 perm   2 sec   (5348 perm/sec)   p_kst 8.544000e-01   p_cons 4.805000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000127/PCDHGB7.4_2818_10000_0.8544_0.4805_1.png
                gene_name: PCDHGB7
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
PCSK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.320867e-03	ci left: 9.791993e-01	ci right 9.845147e-01	k: 9820	n:10000
Cons ci ratio: 1.937393e-02	ci left: 7.957771e-01	ci right 8.114456e-01	k: 8037	n:10000
KS ci ratio: 2.578324e-02	ci left: 6.888946e-01	ci right 7.069900e-01	k: 6980	n:10000
PCSK2   10000 perm   2 sec   (5792 perm/sec)   p_kst 6.980000e-01   p_cons 8.037000e-01   p_joint 9.820000e-01

Outputting figure to mutsig2_images.part000000000127/PCSK2.4_1965_10000_0.698_0.8037_0.982.png
                gene_name: PCSK2
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 70 percent done.
PCDHB15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.344290e-02	ci left: 5.689506e-01	ci right 5.884036e-01	k: 5787	n:10000
Cons ci ratio: 8.075213e-02	ci left: 1.829427e-01	ci right 1.984379e-01	k: 1906	n:10000
KS ci ratio: 2.370625e-02	ci left: 7.234042e-01	ci right 7.408604e-01	k: 7322	n:10000
PCDHB15   10000 perm   2 sec   (5982 perm/sec)   p_kst 7.322000e-01   p_cons 1.906000e-01   p_joint 5.787000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHB15.3_2368_10000_0.7322_0.1906_0.5787.png
                gene_name: PCDHB15
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 71 percent done.
PCDHB16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.775808e-02	ci left: 6.566587e-01	ci right 6.752445e-01	k: 6660	n:10000
Cons ci ratio: 5.702521e-02	ci left: 3.116545e-01	ci right 3.300500e-01	k: 3208	n:10000
KS ci ratio: 4.056613e-02	ci left: 4.729622e-01	ci right 4.926478e-01	k: 4828	n:10000
PCDHB16   10000 perm   2 sec   (5868 perm/sec)   p_kst 4.828000e-01   p_cons 3.208000e-01   p_joint 6.660000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHB16.3_2335_10000_0.4828_0.3208_0.666.png
                gene_name: PCDHB16
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 72 percent done.
PCDHB9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.574050e-02	ci left: 5.361795e-01	ci right 5.557937e-01	k: 5460	n:10000
Cons ci ratio: 7.241845e-02	ci left: 2.183268e-01	ci right 2.348328e-01	k: 2265	n:10000
KS ci ratio: 2.443843e-02	ci left: 7.111875e-01	ci right 7.288841e-01	k: 7201	n:10000
PCDHB9   10000 perm   2 sec   (5971 perm/sec)   p_kst 7.201000e-01   p_cons 2.265000e-01   p_joint 5.460000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHB9.3_2397_10000_0.7201_0.2265_0.546.png
                gene_name: PCDHB9
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 74 percent done.
PCDHGA10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.050197e-02	ci left: 9.280257e-01	ci right 9.379203e-01	k: 9331	n:10000
KS ci ratio: 2.347064e-02	ci left: 7.273436e-01	ci right 7.447187e-01	k: 7361	n:10000
PCDHGA10   10000 perm   2 sec   (5676 perm/sec)   p_kst 7.361000e-01   p_cons 9.331000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000127/PCDHGA10.3_2943_10000_0.7361_0.9331_1.png
                gene_name: PCDHGA10
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
PCDHGA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.314463e-02	ci left: 7.327995e-01	ci right 7.500596e-01	k: 7415	n:10000
KS ci ratio: 3.365594e-02	ci left: 5.658420e-01	ci right 5.853140e-01	k: 5756	n:10000
PCDHGA6   10000 perm   2 sec   (5368 perm/sec)   p_kst 5.756000e-01   p_cons 7.415000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000127/PCDHGA6.3_2846_10000_0.5756_0.7415_1.png
                gene_name: PCDHGA6
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
PCDP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.010768e-02	ci left: 7.836063e-01	ci right 7.996234e-01	k: 7917	n:10000
KS ci ratio: 3.254592e-02	ci left: 5.821915e-01	ci right 6.015549e-01	k: 5919	n:10000
PCDP1   10000 perm   2 sec   (6171 perm/sec)   p_kst 5.919000e-01   p_cons 7.917000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000127/PCDP1.3_1729_10000_0.5919_0.7917_1.png
                gene_name: PCDP1
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
PCOLCE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.374355e-02	ci left: 4.355261e-01	ci right 4.551058e-01	k: 4453	n:10000
Cons ci ratio: 2.227578e-02	ci left: 7.473571e-01	ci right 7.642936e-01	k: 7559	n:10000
KS ci ratio: 5.105301e-02	ci left: 3.613218e-01	ci right 3.803535e-01	k: 3708	n:10000
PCOLCE2   10000 perm   2 sec   (6159 perm/sec)   p_kst 3.708000e-01   p_cons 7.559000e-01   p_joint 4.453000e-01

Outputting figure to mutsig2_images.part000000000127/PCOLCE2.3_1284_10000_0.3708_0.7559_0.4453.png
                gene_name: PCOLCE2
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 80 percent done.
PCSK5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.570989e-02	ci left: 6.901044e-01	ci right 7.081794e-01	k: 6992	n:10000
Cons ci ratio: 1.177263e-01	ci left: 9.389515e-02	ci right 1.057391e-01	k: 997	n:10000
KS ci ratio: 1.858457e-02	ci left: 8.087717e-01	ci right 8.240436e-01	k: 8165	n:10000
PCSK5   10000 perm   2 sec   (5568 perm/sec)   p_kst 8.165000e-01   p_cons 9.970000e-02   p_joint 6.992000e-01

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 8.383109e-02	ci left: 9.440373e-02	ci right 1.027134e-01	k: 1970	n:20000
KS ci ratio: 1.323286e-02	ci left: 8.089413e-01	ci right 8.197672e-01	k: 16288	n:20000
PCSK5   20000 perm   4 sec   (4972 perm/sec)   p_kst 8.144000e-01   p_cons 9.850000e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000127/PCSK5.3_2826_20000_0.8144_0.0985_1.png
                gene_name: PCSK5
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.099 
      ci_cons_bounds_left: 0.094 
     ci_cons_bounds_right: 0.10 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
PCSK9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.571990e-02	ci left: 8.545745e-01	ci right 8.682142e-01	k: 8615	n:10000
KS ci ratio: 7.113958e-03	ci left: 9.645717e-01	ci right 9.715522e-01	k: 9682	n:10000
PCSK9   10000 perm   2 sec   (5881 perm/sec)   p_kst 9.682000e-01   p_cons 8.615000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000127/PCSK9.3_2127_10000_0.9682_0.8615_1.png
                gene_name: PCSK9
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
PCYOX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.111580e-01	ci left: 1.044194e-01	ci right 1.168085e-01	k: 1105	n:10000
Cons ci ratio: 2.478600e-01	ci left: 2.137124e-02	ci right 2.751008e-02	k: 243	n:10000
KS ci ratio: 6.083299e-02	ci left: 2.843880e-01	ci right 3.023325e-01	k: 2933	n:10000
PCYOX1   10000 perm   2 sec   (5599 perm/sec)   p_kst 2.933000e-01   p_cons 2.430000e-02   p_joint 1.105000e-01

Joint ci ratio: 9.833821e-02	ci left: 6.996946e-02	ci right 7.725509e-02	k: 1471	n:20000
Cons ci ratio: 1.732762e-01	ci left: 2.278476e-02	ci right 2.715484e-02	k: 498	n:20000
KS ci ratio: 4.358788e-02	ci left: 2.816310e-01	ci right 2.942307e-01	k: 5758	n:20000
PCYOX1   20000 perm   4 sec   (5320 perm/sec)   p_kst 2.879000e-01   p_cons 2.490000e-02   p_joint 7.355000e-02

Joint ci ratio: 6.158907e-02	ci left: 1.152906e-01	ci right 1.226500e-01	k: 3568	n:30000
Cons ci ratio: 1.385197e-01	ci left: 2.419639e-02	ci right 2.782952e-02	k: 779	n:30000
KS ci ratio: 3.572440e-02	ci left: 2.812554e-01	ci right 2.915193e-01	k: 8591	n:30000
PCYOX1   30000 perm   6 sec   (5166 perm/sec)   p_kst 2.863667e-01   p_cons 2.596667e-02   p_joint 1.189333e-01

Joint ci ratio: 6.747988e-02	ci left: 7.516866e-02	ci right 8.044283e-02	k: 3111	n:40000
Cons ci ratio: 1.194325e-01	ci left: 2.465665e-02	ci right 2.781264e-02	k: 1048	n:40000
KS ci ratio: 3.124187e-02	ci left: 2.779919e-01	ci right 2.868397e-01	k: 11296	n:40000
PCYOX1   40000 perm   8 sec   (5054 perm/sec)   p_kst 2.824000e-01   p_cons 2.620000e-02   p_joint 7.777500e-02

Joint ci ratio: 7.149068e-02	ci left: 5.468866e-02	ci right 5.876300e-02	k: 2835	n:50000
Cons ci ratio: 1.066674e-01	ci left: 2.489541e-02	ci right 2.771995e-02	k: 1314	n:50000
KS ci ratio: 2.794945e-02	ci left: 2.783773e-01	ci right 2.862880e-01	k: 14116	n:50000
PCYOX1   50000 perm   10 sec   (4949 perm/sec)   p_kst 2.823200e-01   p_cons 2.628000e-02   p_joint 5.670000e-02

Joint ci ratio: 6.352107e-02	ci left: 5.778436e-02	ci right 6.159170e-02	k: 3580	n:60000
Cons ci ratio: 9.388732e-02	ci left: 2.690621e-02	ci right 2.957302e-02	k: 1693	n:60000
KS ci ratio: 2.552412e-02	ci left: 2.785678e-01	ci right 2.857866e-01	k: 16930	n:60000
PCYOX1   60000 perm   12 sec   (4850 perm/sec)   p_kst 2.821667e-01   p_cons 2.821667e-02   p_joint 5.966667e-02

Outputting figure to mutsig2_images.part000000000127/PCYOX1.3_1542_60000_0.28217_0.028217_0.059667.png
                gene_name: PCYOX1
               theta_stop: 0.094 
                    nperm: 60000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.028 
      ci_cons_bounds_left: 0.027 
     ci_cons_bounds_right: 0.030 
                  p_joint: 0.060 
     ci_joint_bounds_left: 0.058 
    ci_joint_bounds_right: 0.062 

Current progress: 84 percent done.
PCDHGB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.596919e-02	ci left: 8.506986e-01	ci right 8.644924e-01	k: 8577	n:10000
KS ci ratio: 1.318628e-02	ci left: 8.923120e-01	ci right 9.042548e-01	k: 8984	n:10000
PCDHGB1   10000 perm   2 sec   (6094 perm/sec)   p_kst 8.984000e-01   p_cons 8.577000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000127/PCDHGB1.2_2822_10000_0.8984_0.8577_1.png
                gene_name: PCDHGB1
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
PCDHGB6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.038022e-03	ci left: 9.451295e-01	ci right 9.538063e-01	k: 9496	n:10000
KS ci ratio: 2.739707e-02	ci left: 6.624978e-01	ci right 6.810020e-01	k: 6718	n:10000
PCDHGB6   10000 perm   2 sec   (5905 perm/sec)   p_kst 6.718000e-01   p_cons 9.496000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000127/PCDHGB6.2_2854_10000_0.6718_0.9496_1.png
                gene_name: PCDHGB6
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
PCDHGC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.076116e-03	ci left: 9.809150e-01	ci right 9.859977e-01	k: 9836	n:10000
Cons ci ratio: 6.749929e-02	ci left: 2.436126e-01	ci right 2.607320e-01	k: 2521	n:10000
KS ci ratio: 2.533159e-02	ci left: 6.963564e-01	ci right 7.143239e-01	k: 7054	n:10000
PCDHGC5   10000 perm   2 sec   (5998 perm/sec)   p_kst 7.054000e-01   p_cons 2.521000e-01   p_joint 9.836000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHGC5.2_3026_10000_0.7054_0.2521_0.9836.png
                gene_name: PCDHGC5
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 88 percent done.
PCGF6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.285046e-02	ci left: 3.454159e-01	ci right 3.642687e-01	k: 3548	n:10000
Cons ci ratio: 8.469983e-02	ci left: 1.688761e-01	ci right 1.839129e-01	k: 1763	n:10000
KS ci ratio: 7.352362e-03	ci left: 9.623645e-01	ci right 9.695607e-01	k: 9661	n:10000
PCGF6   10000 perm   1 sec   (6945 perm/sec)   p_kst 9.661000e-01   p_cons 1.763000e-01   p_joint 3.548000e-01

Outputting figure to mutsig2_images.part000000000127/PCGF6.2_1093_10000_0.9661_0.1763_0.3548.png
                gene_name: PCGF6
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 90 percent done.
PCID2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.095822e-02	ci left: 7.694204e-01	ci right 7.858176e-01	k: 7777	n:10000
Cons ci ratio: 1.170498e-02	ci left: 9.126559e-01	ci right 9.234991e-01	k: 9182	n:10000
KS ci ratio: 2.375804e-01	ci left: 2.334629e-02	ci right 2.973355e-02	k: 264	n:10000
PCID2   10000 perm   1 sec   (6992 perm/sec)   p_kst 2.640000e-02   p_cons 9.182000e-01   p_joint 7.777000e-01

Joint ci ratio: 5.048126e-02	ci left: 2.257678e-01	ci right 2.375103e-01	k: 4632	n:20000
Cons ci ratio: 8.047126e-03	ci left: 9.185032e-01	ci right 9.259735e-01	k: 18446	n:20000
KS ci ratio: 1.681617e-01	ci left: 2.422215e-02	ci right 2.871694e-02	k: 528	n:20000
PCID2   20000 perm   3 sec   (6125 perm/sec)   p_kst 2.640000e-02   p_cons 9.223000e-01   p_joint 2.316000e-01

Joint ci ratio: 5.304515e-02	ci left: 1.498996e-01	ci right 1.581009e-01	k: 4619	n:30000
Cons ci ratio: 6.543970e-03	ci left: 9.197898e-01	ci right 9.258614e-01	k: 27686	n:30000
KS ci ratio: 1.354315e-01	ci left: 2.532406e-02	ci right 2.903493e-02	k: 814	n:30000
PCID2   30000 perm   5 sec   (5799 perm/sec)   p_kst 2.713333e-02   p_cons 9.228667e-01   p_joint 1.539667e-01

Joint ci ratio: 4.621826e-02	ci left: 1.488907e-01	ci right 1.559599e-01	k: 6096	n:40000
Cons ci ratio: 5.633805e-03	ci left: 9.210550e-01	ci right 9.262833e-01	k: 36948	n:40000
KS ci ratio: 1.171031e-01	ci left: 2.565209e-02	ci right 2.886704e-02	k: 1089	n:40000
PCID2   40000 perm   7 sec   (5596 perm/sec)   p_kst 2.722500e-02   p_cons 9.237000e-01   p_joint 1.524000e-01

Joint ci ratio: 1.690337e-02	ci left: 5.138093e-01	ci right 5.225885e-01	k: 25910	n:50000
Cons ci ratio: 5.075989e-03	ci left: 9.202839e-01	ci right 9.249869e-01	k: 46133	n:50000
KS ci ratio: 1.045630e-01	ci left: 2.590864e-02	ci right 2.878659e-02	k: 1366	n:50000
PCID2   50000 perm   9 sec   (5444 perm/sec)   p_kst 2.732000e-02   p_cons 9.226600e-01   p_joint 5.182000e-01

Joint ci ratio: 1.543016e-02	ci left: 5.142094e-01	ci right 5.222221e-01	k: 31093	n:60000
Cons ci ratio: 4.612305e-03	ci left: 9.211587e-01	ci right 9.254336e-01	k: 55399	n:60000
KS ci ratio: 9.564471e-02	ci left: 2.592928e-02	ci right 2.855005e-02	k: 1633	n:60000
PCID2   60000 perm   11 sec   (5317 perm/sec)   p_kst 2.721667e-02   p_cons 9.233167e-01   p_joint 5.182167e-01

Outputting figure to mutsig2_images.part000000000127/PCID2.2_1256_60000_0.027217_0.92332_0.51822.png
                gene_name: PCID2
               theta_stop: 0.096 
                    nperm: 60000 
                     p_ks: 0.027 
        ci_ks_bounds_left: 0.026 
       ci_ks_bounds_right: 0.029 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.52 

Current progress: 91 percent done.
PCIF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.595771e-03	ci left: 9.499184e-01	ci right 9.582145e-01	k: 9542	n:10000
KS ci ratio: 1.084238e-02	ci left: 9.237903e-01	ci right 9.339582e-01	k: 9290	n:10000
PCIF1   10000 perm   2 sec   (6253 perm/sec)   p_kst 9.290000e-01   p_cons 9.542000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000127/PCIF1.2_2175_10000_0.929_0.9542_1.png
                gene_name: PCIF1
               theta_stop: 0.011 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
PCK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.366646e-01	ci left: 2.353468e-02	ci right 2.994503e-02	k: 266	n:10000
Cons ci ratio: 1.161173e-01	ci left: 9.632952e-02	ci right 1.083033e-01	k: 1022	n:10000
KS ci ratio: 9.727431e-02	ci left: 1.328630e-01	ci right 1.465476e-01	k: 1396	n:10000
PCK1   10000 perm   2 sec   (6322 perm/sec)   p_kst 1.396000e-01   p_cons 1.022000e-01   p_joint 2.660000e-02

Joint ci ratio: 1.852381e-01	ci left: 1.986864e-02	ci right 2.397200e-02	k: 437	n:20000
Cons ci ratio: 8.320037e-02	ci left: 9.572844e-02	ci right 1.040883e-01	k: 1997	n:20000
KS ci ratio: 6.912998e-02	ci left: 1.336913e-01	ci right 1.433141e-01	k: 2769	n:20000
PCK1   20000 perm   4 sec   (5641 perm/sec)   p_kst 1.384500e-01   p_cons 9.985000e-02   p_joint 2.185000e-02

Joint ci ratio: 1.636481e-01	ci left: 1.722918e-02	ci right 2.033167e-02	k: 562	n:30000
Cons ci ratio: 6.788294e-02	ci left: 9.662742e-02	ci right 1.034503e-01	k: 3000	n:30000
KS ci ratio: 5.674628e-02	ci left: 1.333253e-01	ci right 1.411451e-01	k: 4116	n:30000
PCK1   30000 perm   6 sec   (5386 perm/sec)   p_kst 1.372000e-01   p_cons 1.000000e-01   p_joint 1.873333e-02

Joint ci ratio: 1.339866e-01	ci left: 1.954468e-02	ci right 2.237546e-02	k: 837	n:40000
Cons ci ratio: 5.912018e-02	ci left: 9.608985e-02	ci right 1.019685e-01	k: 3960	n:40000
KS ci ratio: 4.870934e-02	ci left: 1.359452e-01	ci right 1.427572e-01	k: 5573	n:40000
PCK1   40000 perm   8 sec   (5198 perm/sec)   p_kst 1.393250e-01   p_cons 9.900000e-02   p_joint 2.092500e-02

Joint ci ratio: 1.180413e-01	ci left: 2.030476e-02	ci right 2.287121e-02	k: 1078	n:50000
Cons ci ratio: 5.267388e-02	ci left: 9.708723e-02	ci right 1.023593e-01	k: 4985	n:50000
KS ci ratio: 4.331991e-02	ci left: 1.376631e-01	ci right 1.437786e-01	k: 7035	n:50000
PCK1   50000 perm   10 sec   (5046 perm/sec)   p_kst 1.407000e-01   p_cons 9.970000e-02   p_joint 2.156000e-02

Joint ci ratio: 1.041856e-01	ci left: 2.184781e-02	ci right 2.426529e-02	k: 1382	n:60000
Cons ci ratio: 4.817939e-02	ci left: 9.696758e-02	ci right 1.017713e-01	k: 5961	n:60000
KS ci ratio: 3.966095e-02	ci left: 1.372327e-01	ci right 1.428022e-01	k: 8400	n:60000
PCK1   60000 perm   12 sec   (4925 perm/sec)   p_kst 1.400000e-01   p_cons 9.935000e-02   p_joint 2.303333e-02

Joint ci ratio: 9.671832e-02	ci left: 2.181850e-02	ci right 2.404986e-02	k: 1604	n:70000
Cons ci ratio: 4.462211e-02	ci left: 9.707989e-02	ci right 1.015248e-01	k: 6950	n:70000
KS ci ratio: 3.662809e-02	ci left: 1.380327e-01	ci right 1.431971e-01	k: 9842	n:70000
PCK1   70000 perm   15 sec   (4817 perm/sec)   p_kst 1.406000e-01   p_cons 9.928571e-02   p_joint 2.291429e-02

Outputting figure to mutsig2_images.part000000000127/PCK1.2_1905_70000_0.1406_0.099286_0.022914.png
                gene_name: PCK1
               theta_stop: 0.097 
                    nperm: 70000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.099 
      ci_cons_bounds_left: 0.097 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.023 
     ci_joint_bounds_left: 0.022 
    ci_joint_bounds_right: 0.024 

Current progress: 94 percent done.
PCMTD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.198086e-02	ci left: 1.465847e-01	ci right 1.608177e-01	k: 1536	n:10000
Cons ci ratio: 9.103792e-02	ci left: 1.492334e-01	ci right 1.635673e-01	k: 1563	n:10000
KS ci ratio: 1.956251e-01	ci left: 3.481398e-02	ci right 4.245779e-02	k: 385	n:10000
PCMTD2   10000 perm   1 sec   (6734 perm/sec)   p_kst 3.850000e-02   p_cons 1.563000e-01   p_joint 1.536000e-01

Joint ci ratio: 6.480485e-02	ci left: 1.496151e-01	ci right 1.596855e-01	k: 3092	n:20000
Cons ci ratio: 6.375951e-02	ci left: 1.538582e-01	ci right 1.640411e-01	k: 3178	n:20000
KS ci ratio: 1.374995e-01	ci left: 3.635916e-02	ci right 4.177590e-02	k: 780	n:20000
PCMTD2   20000 perm   3 sec   (5962 perm/sec)   p_kst 3.900000e-02   p_cons 1.589000e-01   p_joint 1.546000e-01

Joint ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
Cons ci ratio: 5.221928e-02	ci left: 1.539882e-01	ci right 1.622782e-01	k: 4743	n:30000
KS ci ratio: 1.126445e-01	ci left: 3.661037e-02	ci right 4.101285e-02	k: 1163	n:30000
PCMTD2   30000 perm   5 sec   (5670 perm/sec)   p_kst 3.876667e-02   p_cons 1.581000e-01   p_joint 1

Joint ci ratio: 9.799510e-05	ci left: 9.999078e-01	ci right 1	k: 40000	n:40000
Cons ci ratio: 4.525450e-02	ci left: 1.543637e-01	ci right 1.615360e-01	k: 6317	n:40000
KS ci ratio: 9.735771e-02	ci left: 3.705059e-02	ci right 4.086671e-02	k: 1557	n:40000
PCMTD2   40000 perm   7 sec   (5480 perm/sec)   p_kst 3.892500e-02   p_cons 1.579250e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000127/PCMTD2.2_1106_40000_0.038925_0.15793_1.png
                gene_name: PCMTD2
               theta_stop: 0.097 
                    nperm: 40000 
                     p_ks: 0.039 
        ci_ks_bounds_left: 0.037 
       ci_ks_bounds_right: 0.041 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
PCOLCE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.136378e-02	ci left: 7.626362e-01	ci right 7.792057e-01	k: 7710	n:10000
Cons ci ratio: 9.661964e-03	ci left: 9.380680e-01	ci right 9.472720e-01	k: 9428	n:10000
KS ci ratio: 3.257961e-02	ci left: 5.816898e-01	ci right 6.010569e-01	k: 5914	n:10000
PCOLCE   10000 perm   2 sec   (6554 perm/sec)   p_kst 5.914000e-01   p_cons 9.428000e-01   p_joint 7.710000e-01

Outputting figure to mutsig2_images.part000000000127/PCOLCE.2_1386_10000_0.5914_0.9428_0.771.png
                gene_name: PCOLCE
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 97 percent done.
PCYT1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.847161e-02	ci left: 1.918044e-01	ci right 2.075710e-01	k: 1996	n:10000
KS ci ratio: 2.281878e-02	ci left: 7.382572e-01	ci right 7.553988e-01	k: 7469	n:10000
PCYT1B   10000 perm   2 sec   (6654 perm/sec)   p_kst 7.469000e-01   p_cons 1.996000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000127/PCYT1B.2_1246_10000_0.7469_0.1996_1.png
                gene_name: PCYT1B
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 99 percent done.
PDCD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.223415e-01	ci left: 8.737675e-02	ci right 9.886154e-02	k: 930	n:10000
Cons ci ratio: 7.448267e-02	ci left: 2.087570e-01	ci right 2.250082e-01	k: 2168	n:10000
KS ci ratio: 1.003866e-01	ci left: 1.256193e-01	ci right 1.389957e-01	k: 1322	n:10000
PDCD1   10000 perm   1 sec   (6991 perm/sec)   p_kst 1.322000e-01   p_cons 2.168000e-01   p_joint 9.300000e-02

Joint ci ratio: 8.776318e-02	ci left: 8.670563e-02	ci right 9.471382e-02	k: 1813	n:20000
Cons ci ratio: 5.243632e-02	ci left: 2.126407e-01	ci right 2.241413e-01	k: 4367	n:20000
KS ci ratio: 7.075435e-02	ci left: 1.283224e-01	ci right 1.377845e-01	k: 2660	n:20000
PDCD1   20000 perm   3 sec   (6151 perm/sec)   p_kst 1.330000e-01   p_cons 2.183500e-01   p_joint 9.065000e-02

Outputting figure to mutsig2_images.part000000000127/PDCD1.2_887_20000_0.133_0.21835_0.09065.png
                gene_name: PDCD1
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.091 
     ci_joint_bounds_left: 0.087 
    ci_joint_bounds_right: 0.095 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000127
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 127 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1726>
Subject: Job 8004376: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1726>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000128> was used as the working directory.
Started at Sun Nov 11 15:12:07 2012
Results reported at Sun Nov 11 16:25:05 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000128.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000128.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 128  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000128.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   4400.30 sec.
    Max Memory :      4811 MB
    Max Swap   :      7263 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
128
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 128
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 128: processing genes 11491 - 11580
Calculating significance of each gene.
Using projection method.
11491	PDCD10	2.810481e-02
11492	PDCD11	9.132297e-01
11493	PDCD1LG2	1
11494	PDCD2	5.102969e-01
11495	PDCD2L	4.853347e-01
11496	PDCD4	1
11497	PDCD5	1
11498	PDCD6	1
11499	PDCD6IP	8.574429e-01
11500	PDCD7	6.014991e-01
11501	PDCL	3.744980e-01
11502	PDCL2	2.816451e-02
11503	PDCL3	6.569991e-02
11504	PDDC1	1.845113e-01
11505	PDE10A	9.610893e-01
11506	PDE11A	2.347940e-02
11507	PDE12	6.728901e-01
11508	PDE1A	1
11509	PDE1B	3.969268e-01
11510	PDE1C	4.679036e-03
11511	PDE2A	7.995430e-01
11512	PDE3A	8.479092e-01
11513	PDE3B	4.037411e-01
11514	PDE4A	1
11515	PDE4B	6.320717e-01
11516	PDE4C	1.946586e-01
11517	PDE4D	9.445562e-01
11518	PDE4DIP	9.964523e-01
11519	PDE5A	4.692734e-01
11520	PDE6A	6.605509e-01
11521	PDE6B	5.904180e-01
11522	PDE6C	1
11523	PDE6D	1
11524	PDE6G	1
11525	PDE6H	5.217900e-02
11526	PDE7A	8.751188e-01
11527	PDE7B	7.976387e-01
11528	PDE8A	1.709880e-01
11529	PDE8B	9.102722e-01
11530	PDE9A	1
11531	PDGFA	1
11532	PDGFB	3.853014e-01
11533	PDGFC	3.165526e-01
11534	PDGFD	6.956007e-01
11535	PDGFRA	6.776220e-01
11536	PDGFRB	4.893054e-01
11537	PDGFRL	8.369453e-01
11538	PDHA1	1
11539	PDHA2	1.841246e-02
11540	PDHB	1
11541	PDHX	1
11542	PDIA2	3.329661e-01
11543	PDIA3	7.338788e-01
11544	PDIA4	3.531103e-01
11545	PDIA5	8.132537e-01
11546	PDIA6	1
11547	PDIK1L	5.995006e-01
11548	PDILT	4.668498e-03
11549	PDK1	6.349323e-01
11550	PDK2	4.571100e-01
11551	PDK3	1.684907e-01
11552	PDK4	1.653079e-01
11553	PDLIM1	1
11554	PDLIM2	1
11555	PDLIM3	1
11556	PDLIM4	1
11557	PDLIM5	5.012205e-01
11558	PDLIM7	7.749571e-01
11559	PDP1	2.613106e-01
11560	PDP2	1.426336e-01
11561	PDPK1	4.208465e-01
11562	PDPN	1
11563	PDPR	1.585749e-01
11564	PDRG1	1
11565	PDS5A	2.308439e-01
11566	PDS5B	6.498833e-01
11567	PDSS1	5.931268e-01
11568	PDSS2	5.421191e-01
11569	PDX1	1
11570	PDXDC1	8.998714e-01
11571	PDXK	1
11572	PDXP	5.622616e-01
11573	PDYN	1.897629e-05
11574	PDZD11	2.356346e-01
11575	PDZD2	9.112620e-01
11576	PDZD3	4.554068e-01
11577	PDZD4	2.072447e-01
11578	PDZD7	1.512784e-01
11579	PDZD8	1
11580	PDZD9	4.083102e-01
Done

Running MutSig 2:
Scatter job 128: processing genes 11491 - 11580
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
PDE4DIP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.608005e-02	ci left: 2.516216e-01	ci right 2.689183e-01	k: 2602	n:10000
Cons ci ratio: 2.998038e-02	ci left: 6.213549e-01	ci right 6.403688e-01	k: 6309	n:10000
KS ci ratio: 1.129456e-01	ci left: 1.013965e-01	ci right 1.136332e-01	k: 1074	n:10000
PDE4DIP   10000 perm   3 sec   (3487 perm/sec)   p_kst 1.074000e-01   p_cons 6.309000e-01   p_joint 2.602000e-01

Joint ci ratio: 4.990669e-02	ci left: 2.298315e-01	ci right 2.416454e-01	k: 4714	n:20000
Cons ci ratio: 1.985188e-02	ci left: 6.543413e-01	ci right 6.675119e-01	k: 13219	n:20000
KS ci ratio: 8.020090e-02	ci left: 1.024046e-01	ci right 1.110102e-01	k: 2133	n:20000
PDE4DIP   20000 perm   8 sec   (2430 perm/sec)   p_kst 1.066500e-01   p_cons 6.609500e-01   p_joint 2.357000e-01

Outputting figure to mutsig2_images.part000000000128/PDE4DIP.26_8813_20000_0.10665_0.66095_0.2357.png
                gene_name: PDE4DIP
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 2 percent done.
PDZD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.573248e-02	ci left: 2.032352e-01	ci right 2.193333e-01	k: 2112	n:10000
Cons ci ratio: 1.876749e-01	ci left: 3.786599e-02	ci right 4.580373e-02	k: 417	n:10000
KS ci ratio: 2.679656e-02	ci left: 6.722668e-01	ci right 6.906274e-01	k: 6815	n:10000
PDZD2   10000 perm   3 sec   (3989 perm/sec)   p_kst 6.815000e-01   p_cons 4.170000e-02   p_joint 2.112000e-01

Joint ci ratio: 5.801444e-02	ci left: 1.804306e-01	ci right 1.912609e-01	k: 3716	n:20000
Cons ci ratio: 1.331252e-01	ci left: 3.877774e-02	ci right 4.435654e-02	k: 830	n:20000
KS ci ratio: 1.751259e-02	ci left: 7.083860e-01	ci right 7.209516e-01	k: 14294	n:20000
PDZD2   20000 perm   5 sec   (3638 perm/sec)   p_kst 7.147000e-01   p_cons 4.150000e-02   p_joint 1.858000e-01

Joint ci ratio: 5.703564e-02	ci left: 1.321398e-01	ci right 1.399309e-01	k: 4080	n:30000
Cons ci ratio: 1.107765e-01	ci left: 3.784298e-02	ci right 4.231332e-02	k: 1201	n:30000
KS ci ratio: 1.424300e-02	ci left: 7.111614e-01	ci right 7.213966e-01	k: 21489	n:30000
PDZD2   30000 perm   9 sec   (3524 perm/sec)   p_kst 7.163000e-01   p_cons 4.003333e-02   p_joint 1.360000e-01

Joint ci ratio: 4.647484e-02	ci left: 1.474794e-01	ci right 1.545214e-01	k: 6039	n:40000
Cons ci ratio: 9.649102e-02	ci left: 3.770985e-02	ci right 4.155735e-02	k: 1584	n:40000
KS ci ratio: 1.227265e-02	ci left: 7.139138e-01	ci right 7.227545e-01	k: 28734	n:40000
PDZD2   40000 perm   12 sec   (3436 perm/sec)   p_kst 7.183500e-01   p_cons 3.960000e-02   p_joint 1.509750e-01

Outputting figure to mutsig2_images.part000000000128/PDZD2.18_8616_40000_0.71835_0.0396_0.15097.png
                gene_name: PDZD2
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.040 
      ci_cons_bounds_left: 0.038 
     ci_cons_bounds_right: 0.042 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.15 

Current progress: 4 percent done.
PDE1C
Processing conservation and coverage...
Processing mutations... 
Skipping 2 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.435667e-02	ci left: 5.557167e-01	ci right 5.752451e-01	k: 5655	n:10000
Cons ci ratio: 1.086698e-02	ci left: 9.234805e-01	ci right 9.336681e-01	k: 9287	n:10000
KS ci ratio: 4.779148e-02	ci left: 3.924695e-01	ci right 4.117875e-01	k: 4021	n:10000
PDE1C   10000 perm   2 sec   (5596 perm/sec)   p_kst 4.021000e-01   p_cons 9.287000e-01   p_joint 5.655000e-01

Outputting figure to mutsig2_images.part000000000128/PDE1C.10_1973_10000_0.4021_0.9287_0.5655.png
                gene_name: PDE1C
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 6 percent done.
PDE11A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.975980e-02	ci left: 7.893861e-01	ci right 8.052403e-01	k: 7974	n:10000
Cons ci ratio: 3.411962e-02	ci left: 5.591248e-01	ci right 5.786351e-01	k: 5689	n:10000
KS ci ratio: 5.129453e-02	ci left: 3.591340e-01	ci right 3.781425e-01	k: 3686	n:10000
PDE11A   10000 perm   2 sec   (5291 perm/sec)   p_kst 3.686000e-01   p_cons 5.689000e-01   p_joint 7.974000e-01

Outputting figure to mutsig2_images.part000000000128/PDE11A.10_3048_10000_0.3686_0.5689_0.7974.png
                gene_name: PDE11A
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 8 percent done.
PDGFRA
Processing conservation and coverage...
Processing mutations... 
Skipping 3 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.451312e-02	ci left: 4.269487e-01	ci right 4.464882e-01	k: 4367	n:10000
Cons ci ratio: 2.757116e-02	ci left: 6.596787e-01	ci right 6.782228e-01	k: 6690	n:10000
KS ci ratio: 5.853744e-02	ci left: 3.004459e-01	ci right 3.186652e-01	k: 3095	n:10000
PDGFRA   10000 perm   2 sec   (5708 perm/sec)   p_kst 3.095000e-01   p_cons 6.690000e-01   p_joint 4.367000e-01

Outputting figure to mutsig2_images.part000000000128/PDGFRA.7_3358_10000_0.3095_0.669_0.4367.png
                gene_name: PDGFRA
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 10 percent done.
PDILT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.451070e-02	ci left: 5.535118e-01	ci right 5.730513e-01	k: 5633	n:10000
KS ci ratio: 2.331365e-02	ci left: 7.299703e-01	ci right 7.472905e-01	k: 7387	n:10000
PDILT   10000 perm   2 sec   (5946 perm/sec)   p_kst 7.387000e-01   p_cons 5.633000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000128/PDILT.10_1799_10000_0.7387_0.5633_1.png
                gene_name: PDILT
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 12 percent done.
PDE10A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.784492e-02	ci left: 1.314920e-01	ci right 1.451194e-01	k: 1382	n:10000
Cons ci ratio: 7.904075e-02	ci left: 1.895391e-01	ci right 2.052376e-01	k: 1973	n:10000
KS ci ratio: 1.107643e-01	ci left: 1.051021e-01	ci right 1.175253e-01	k: 1112	n:10000
PDE10A   10000 perm   2 sec   (5562 perm/sec)   p_kst 1.112000e-01   p_cons 1.973000e-01   p_joint 1.382000e-01

Joint ci ratio: 7.451510e-02	ci left: 1.170024e-01	ci right 1.261079e-01	k: 2430	n:20000
Cons ci ratio: 5.673382e-02	ci left: 1.872042e-01	ci right 1.981853e-01	k: 3853	n:20000
KS ci ratio: 8.049680e-02	ci left: 1.017171e-01	ci right 1.102979e-01	k: 2119	n:20000
PDE10A   20000 perm   4 sec   (5180 perm/sec)   p_kst 1.059500e-01   p_cons 1.926500e-01   p_joint 1.215000e-01

Outputting figure to mutsig2_images.part000000000128/PDE10A.9_2499_20000_0.10595_0.19265_0.1215.png
                gene_name: PDE10A
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 14 percent done.
PDHA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.625577e-02	ci left: 8.462127e-01	ci right 8.601809e-01	k: 8533	n:10000
KS ci ratio: 3.151217e-02	ci left: 5.977488e-01	ci right 6.169886e-01	k: 6074	n:10000
PDHA2   10000 perm   2 sec   (6121 perm/sec)   p_kst 6.074000e-01   p_cons 8.533000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000128/PDHA2.8_1171_10000_0.6074_0.8533_1.png
                gene_name: PDHA2
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 16 percent done.
PDYN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.666552e-01	ci left: 9.230735e-03	ci right 1.346114e-02	k: 112	n:10000
Cons ci ratio: 5.631335e-02	ci left: 3.171122e-01	ci right 3.355890e-01	k: 3263	n:10000
KS ci ratio: 1.752551e+00	ci left: 1.089969e-04	ci right 1.023839e-03	k: 4	n:10000
PDYN   10000 perm   2 sec   (5401 perm/sec)   p_kst 4.000000e-04   p_cons 3.263000e-01   p_joint 1.120000e-02

Joint ci ratio: 3.254805e-01	ci left: 6.029406e-03	ci right 8.417230e-03	k: 143	n:20000
Cons ci ratio: 3.980148e-02	ci left: 3.200514e-01	ci right 3.330991e-01	k: 6531	n:20000
KS ci ratio: 1.131239e+00	ci left: 2.745890e-04	ci right 9.838883e-04	k: 11	n:20000
PDYN   20000 perm   4 sec   (5308 perm/sec)   p_kst 5.500000e-04   p_cons 3.265500e-01   p_joint 7.150000e-03

Joint ci ratio: 3.329187e-01	ci left: 3.835360e-03	ci right 5.396299e-03	k: 137	n:30000
Cons ci ratio: 3.375987e-02	ci left: 3.048016e-01	ci right 3.153019e-01	k: 9301	n:30000
KS ci ratio: 1.011870e+00	ci left: 2.551537e-04	ci right 7.828635e-04	k: 14	n:30000
PDYN   30000 perm   6 sec   (5188 perm/sec)   p_kst 4.666667e-04   p_cons 3.100333e-01   p_joint 4.566667e-03

Joint ci ratio: 2.982502e-01	ci left: 3.659335e-03	ci right 4.964242e-03	k: 171	n:40000
Cons ci ratio: 2.933916e-02	ci left: 3.040250e-01	ci right 3.131028e-01	k: 12342	n:40000
KS ci ratio: 9.237334e-01	ci left: 2.475970e-04	ci right 6.803793e-04	k: 17	n:40000
PDYN   40000 perm   8 sec   (5059 perm/sec)   p_kst 4.250000e-04   p_cons 3.085500e-01   p_joint 4.275000e-03

Joint ci ratio: 3.487776e-01	ci left: 2.081393e-03	ci right 2.977924e-03	k: 125	n:50000
Cons ci ratio: 2.677866e-02	ci left: 2.959650e-01	ci right 3.040182e-01	k: 14999	n:50000
KS ci ratio: 7.685677e-01	ci left: 3.235989e-04	ci right 7.380108e-04	k: 25	n:50000
PDYN   50000 perm   10 sec   (4956 perm/sec)   p_kst 5.000000e-04   p_cons 2.999800e-01   p_joint 2.500000e-03

Joint ci ratio: 3.421151e-01	ci left: 1.810552e-03	ci right 2.572218e-03	k: 130	n:60000
Cons ci ratio: 2.447071e-02	ci left: 2.958862e-01	ci right 3.032331e-01	k: 17973	n:60000
KS ci ratio: 6.821911e-01	ci left: 3.648273e-04	ci right 7.528249e-04	k: 32	n:60000
PDYN   60000 perm   12 sec   (4855 perm/sec)   p_kst 5.333333e-04   p_cons 2.995500e-01   p_joint 2.166667e-03

Joint ci ratio: 3.155327e-01	ci left: 1.853398e-03	ci right 2.560311e-03	k: 153	n:70000
Cons ci ratio: 2.266602e-02	ci left: 2.959657e-01	ci right 3.027652e-01	k: 20955	n:70000
KS ci ratio: 6.120175e-01	ci left: 4.082673e-04	ci right 7.780431e-04	k: 40	n:70000
PDYN   70000 perm   15 sec   (4748 perm/sec)   p_kst 5.714286e-04   p_cons 2.993571e-01   p_joint 2.185714e-03

Joint ci ratio: 3.435251e-01	ci left: 1.346431e-03	ci right 1.915692e-03	k: 129	n:80000
Cons ci ratio: 2.122788e-02	ci left: 2.956791e-01	ci right 3.020355e-01	k: 23908	n:80000
KS ci ratio: 5.778027e-01	ci left: 4.103200e-04	ci right 7.525977e-04	k: 45	n:80000
PDYN   80000 perm   17 sec   (4641 perm/sec)   p_kst 5.625000e-04   p_cons 2.988500e-01   p_joint 1.612500e-03

Joint ci ratio: 3.298630e-01	ci left: 1.308716e-03	ci right 1.835359e-03	k: 140	n:90000
Cons ci ratio: 2.002319e-02	ci left: 2.956665e-01	ci right 3.016576e-01	k: 26879	n:90000
KS ci ratio: 5.542146e-01	ci left: 4.028093e-04	ci right 7.197213e-04	k: 49	n:90000
PDYN   90000 perm   20 sec   (4551 perm/sec)   p_kst 5.444444e-04   p_cons 2.986556e-01   p_joint 1.555556e-03

Joint ci ratio: 3.177107e-01	ci left: 1.278904e-03	ci right 1.770737e-03	k: 151	n:100000
Cons ci ratio: 1.899643e-02	ci left: 2.958043e-01	ci right 3.014874e-01	k: 29864	n:100000
KS ci ratio: 5.332977e-01	ci left: 3.970308e-04	ci right 6.931965e-04	k: 53	n:100000
PDYN   100000 perm   22 sec   (4483 perm/sec)   p_kst 5.300000e-04   p_cons 2.986400e-01   p_joint 1.510000e-03

Joint ci ratio: 3.187846e-01	ci left: 1.154263e-03	ci right 1.599967e-03	k: 150	n:110000
Cons ci ratio: 1.814565e-02	ci left: 2.951710e-01	ci right 3.005851e-01	k: 32766	n:110000
KS ci ratio: 5.059295e-01	ci left: 4.083291e-04	ci right 6.918162e-04	k: 59	n:110000
PDYN   110000 perm   25 sec   (4406 perm/sec)   p_kst 5.363636e-04   p_cons 2.978727e-01   p_joint 1.363636e-03

Joint ci ratio: 3.220219e-01	ci left: 1.035074e-03	ci right 1.439650e-03	k: 147	n:120000
Cons ci ratio: 1.736097e-02	ci left: 2.955792e-01	ci right 3.007639e-01	k: 35780	n:120000
KS ci ratio: 4.977098e-01	ci left: 3.888563e-04	ci right 6.529282e-04	k: 61	n:120000
PDYN   120000 perm   28 sec   (4341 perm/sec)   p_kst 5.083333e-04   p_cons 2.981667e-01   p_joint 1.225000e-03

Joint ci ratio: 3.384606e-01	ci left: 8.566690e-04	ci right 1.212347e-03	k: 133	n:130000
Cons ci ratio: 1.665837e-02	ci left: 2.962204e-01	ci right 3.012040e-01	k: 38832	n:130000
KS ci ratio: 4.860927e-01	ci left: 3.791569e-04	ci right 6.286231e-04	k: 64	n:130000
PDYN   130000 perm   30 sec   (4268 perm/sec)   p_kst 4.923077e-04   p_cons 2.987077e-01   p_joint 1.023077e-03

Joint ci ratio: 2.374531e-01	ci left: 1.712273e-03	ci right 2.180169e-03	k: 271	n:140000
Cons ci ratio: 1.606286e-02	ci left: 2.960395e-01	ci right 3.008403e-01	k: 41781	n:140000
KS ci ratio: 4.650988e-01	ci left: 3.897946e-04	ci right 6.316783e-04	k: 70	n:140000
PDYN   140000 perm   33 sec   (4212 perm/sec)   p_kst 5.000000e-04   p_cons 2.984357e-01   p_joint 1.935714e-03

Joint ci ratio: 2.295707e-01	ci left: 1.717380e-03	ci right 2.168886e-03	k: 290	n:150000
Cons ci ratio: 1.552893e-02	ci left: 2.958323e-01	ci right 3.004688e-01	k: 44722	n:150000
KS ci ratio: 4.495394e-01	ci left: 3.933014e-04	ci right 6.267146e-04	k: 75	n:150000
PDYN   150000 perm   36 sec   (4161 perm/sec)   p_kst 5.000000e-04   p_cons 2.981467e-01   p_joint 1.933333e-03

Joint ci ratio: 2.220660e-01	ci left: 1.727976e-03	ci right 2.165387e-03	k: 310	n:160000
Cons ci ratio: 1.501195e-02	ci left: 2.965702e-01	ci right 3.010621e-01	k: 47810	n:160000
KS ci ratio: 4.301629e-01	ci left: 4.076266e-04	ci right 6.361083e-04	k: 82	n:160000
PDYN   160000 perm   39 sec   (4109 perm/sec)   p_kst 5.125000e-04   p_cons 2.988125e-01   p_joint 1.937500e-03

Joint ci ratio: 2.133236e-01	ci left: 1.770939e-03	ci right 2.199271e-03	k: 336	n:170000
Cons ci ratio: 1.457891e-02	ci left: 2.962020e-01	ci right 3.005578e-01	k: 50724	n:170000
KS ci ratio: 4.108165e-01	ci left: 4.257304e-04	ci right 6.506975e-04	k: 90	n:170000
PDYN   170000 perm   42 sec   (4055 perm/sec)   p_kst 5.294118e-04   p_cons 2.983765e-01   p_joint 1.976471e-03

Joint ci ratio: 2.069717e-01	ci left: 1.783083e-03	ci right 2.199884e-03	k: 357	n:180000
Cons ci ratio: 1.417715e-02	ci left: 2.959984e-01	ci right 3.002303e-01	k: 53660	n:180000
KS ci ratio: 3.979073e-01	ci left: 4.320224e-04	ci right 6.512529e-04	k: 96	n:180000
PDYN   180000 perm   45 sec   (4004 perm/sec)   p_kst 5.333333e-04   p_cons 2.981111e-01   p_joint 1.983333e-03

Joint ci ratio: 1.825491e-01	ci left: 2.200044e-03	ci right 2.646933e-03	k: 459	n:190000
Cons ci ratio: 1.295220e-02	ci left: 3.231672e-01	ci right 3.273855e-01	k: 61802	n:190000
KS ci ratio: 3.880326e-01	ci left: 4.330000e-04	ci right 6.458797e-04	k: 101	n:190000
PDYN   190000 perm   48 sec   (3955 perm/sec)   p_kst 5.315789e-04   p_cons 3.252737e-01   p_joint 2.415789e-03

Joint ci ratio: 1.854098e-01	ci left: 2.023248e-03	ci right 2.441389e-03	k: 445	n:200000
Cons ci ratio: 1.263111e-02	ci left: 3.229823e-01	ci right 3.270928e-01	k: 65007	n:200000
KS ci ratio: 3.824514e-01	ci left: 4.248968e-04	ci right 6.300324e-04	k: 104	n:200000
PDYN   200000 perm   51 sec   (3907 perm/sec)   p_kst 5.200000e-04   p_cons 3.250350e-01   p_joint 2.225000e-03

Joint ci ratio: 1.936422e-01	ci left: 1.759044e-03	ci right 2.140628e-03	k: 408	n:210000
Cons ci ratio: 1.232515e-02	ci left: 3.230871e-01	ci right 3.270986e-01	k: 68269	n:210000
KS ci ratio: 3.719707e-01	ci left: 4.305268e-04	ci right 6.312982e-04	k: 110	n:210000
PDYN   210000 perm   54 sec   (3853 perm/sec)   p_kst 5.238095e-04   p_cons 3.250905e-01   p_joint 1.942857e-03

Joint ci ratio: 1.934141e-01	ci left: 1.683406e-03	ci right 2.048100e-03	k: 409	n:220000
Cons ci ratio: 1.204489e-02	ci left: 3.230202e-01	ci right 3.269390e-01	k: 71495	n:220000
KS ci ratio: 3.703100e-01	ci left: 4.150782e-04	ci right 6.075716e-04	k: 111	n:220000
PDYN   220000 perm   58 sec   (3805 perm/sec)   p_kst 5.045455e-04   p_cons 3.249773e-01   p_joint 1.859091e-03

Joint ci ratio: 1.911013e-01	ci left: 1.651598e-03	ci right 2.004625e-03	k: 419	n:230000
Cons ci ratio: 1.178280e-02	ci left: 3.229643e-01	ci right 3.267966e-01	k: 74722	n:230000
KS ci ratio: 3.623112e-01	ci left: 4.167697e-04	ci right 6.048868e-04	k: 116	n:230000
PDYN   230000 perm   61 sec   (3754 perm/sec)   p_kst 5.043478e-04   p_cons 3.248783e-01   p_joint 1.821739e-03

Joint ci ratio: 1.927242e-01	ci left: 1.555008e-03	ci right 1.890543e-03	k: 412	n:240000
Cons ci ratio: 1.152211e-02	ci left: 3.234840e-01	ci right 3.272369e-01	k: 78086	n:240000
KS ci ratio: 3.562731e-01	ci left: 4.145665e-04	ci right 5.978482e-04	k: 120	n:240000
PDYN   240000 perm   65 sec   (3705 perm/sec)   p_kst 5.000000e-04   p_cons 3.253583e-01   p_joint 1.716667e-03

Joint ci ratio: 1.902101e-01	ci left: 1.534697e-03	ci right 1.861030e-03	k: 423	n:250000
Cons ci ratio: 1.129318e-02	ci left: 3.233717e-01	ci right 3.270483e-01	k: 81302	n:250000
KS ci ratio: 3.505271e-01	ci left: 4.125635e-04	ci right 5.913491e-04	k: 124	n:250000
PDYN   250000 perm   68 sec   (3659 perm/sec)   p_kst 4.960000e-04   p_cons 3.252080e-01   p_joint 1.692000e-03

Joint ci ratio: 1.880085e-01	ci left: 1.512309e-03	ci right 1.829734e-03	k: 433	n:260000
Cons ci ratio: 1.108108e-02	ci left: 3.231229e-01	ci right 3.267272e-01	k: 84480	n:260000
KS ci ratio: 3.336034e-01	ci left: 4.424045e-04	ci right 6.228794e-04	k: 137	n:260000
PDYN   260000 perm   72 sec   (3615 perm/sec)   p_kst 5.269231e-04   p_cons 3.249231e-01   p_joint 1.665385e-03

Joint ci ratio: 1.850485e-01	ci left: 1.505728e-03	ci right 1.816237e-03	k: 447	n:270000
Cons ci ratio: 1.088002e-02	ci left: 3.229116e-01	ci right 3.264477e-01	k: 87663	n:270000
KS ci ratio: 3.288720e-01	ci left: 4.396020e-04	ci right 6.158524e-04	k: 141	n:270000
PDYN   270000 perm   76 sec   (3570 perm/sec)   p_kst 5.222222e-04   p_cons 3.246778e-01   p_joint 1.655556e-03

Joint ci ratio: 1.865193e-01	ci left: 1.428109e-03	ci right 1.725217e-03	k: 440	n:280000
Cons ci ratio: 1.068822e-02	ci left: 3.227694e-01	ci right 3.262413e-01	k: 90861	n:280000
KS ci ratio: 3.243363e-01	ci left: 4.370164e-04	ci right 6.093107e-04	k: 145	n:280000
PDYN   280000 perm   80 sec   (3521 perm/sec)   p_kst 5.178571e-04   p_cons 3.245036e-01   p_joint 1.571429e-03

Joint ci ratio: 2.017587e-01	ci left: 1.168868e-03	ci right 1.434362e-03	k: 376	n:290000
Cons ci ratio: 1.050241e-02	ci left: 3.227960e-01	ci right 3.262075e-01	k: 94105	n:290000
KS ci ratio: 3.199833e-01	ci left: 4.346246e-04	ci right 6.032049e-04	k: 149	n:290000
PDYN   290000 perm   83 sec   (3478 perm/sec)   p_kst 5.137931e-04   p_cons 3.245000e-01   p_joint 1.296552e-03

Joint ci ratio: 1.978602e-01	ci left: 1.177405e-03	ci right 1.439048e-03	k: 391	n:300000
Cons ci ratio: 1.032832e-02	ci left: 3.227215e-01	ci right 3.260752e-01	k: 97319	n:300000
KS ci ratio: 3.158010e-01	ci left: 4.324066e-04	ci right 5.974918e-04	k: 153	n:300000
PDYN   300000 perm   87 sec   (3433 perm/sec)   p_kst 5.100000e-04   p_cons 3.243967e-01   p_joint 1.303333e-03

Joint ci ratio: 1.934666e-01	ci left: 1.194646e-03	ci right 1.453531e-03	k: 409	n:310000
Cons ci ratio: 1.016696e-02	ci left: 3.224653e-01	ci right 3.257638e-01	k: 100475	n:310000
KS ci ratio: 3.107960e-01	ci left: 4.333191e-04	ci right 5.956109e-04	k: 158	n:310000
PDYN   310000 perm   91 sec   (3391 perm/sec)   p_kst 5.096774e-04   p_cons 3.241129e-01   p_joint 1.319355e-03

Joint ci ratio: 1.939449e-01	ci left: 1.151364e-03	ci right 1.401558e-03	k: 407	n:320000
Cons ci ratio: 1.000371e-02	ci left: 3.226282e-01	ci right 3.258750e-01	k: 103760	n:320000
KS ci ratio: 3.032591e-01	ci left: 4.428527e-04	ci right 6.039173e-04	k: 166	n:320000
PDYN   320000 perm   95 sec   (3351 perm/sec)   p_kst 5.187500e-04   p_cons 3.242500e-01   p_joint 1.271875e-03

Joint ci ratio: 1.907003e-01	ci left: 1.156856e-03	ci right 1.403551e-03	k: 421	n:330000
Cons ci ratio: 9.853391e-03	ci left: 3.225455e-01	ci right 3.257424e-01	k: 106967	n:330000
KS ci ratio: 2.996918e-01	ci left: 4.406373e-04	ci right 5.986522e-04	k: 170	n:330000
PDYN   330000 perm   100 sec   (3313 perm/sec)   p_kst 5.151515e-04   p_cons 3.241424e-01   p_joint 1.275758e-03

Joint ci ratio: 1.867574e-01	ci left: 1.173272e-03	ci right 1.417708e-03	k: 439	n:340000
Cons ci ratio: 9.707176e-03	ci left: 3.225797e-01	ci right 3.257292e-01	k: 110212	n:340000
KS ci ratio: 2.979558e-01	ci left: 4.331186e-04	ci right 5.873672e-04	k: 172	n:340000
PDYN   340000 perm   104 sec   (3276 perm/sec)   p_kst 5.058824e-04   p_cons 3.241529e-01   p_joint 1.291176e-03

Joint ci ratio: 1.836527e-01	ci left: 1.180620e-03	ci right 1.422044e-03	k: 454	n:350000
Cons ci ratio: 9.563603e-03	ci left: 3.227806e-01	ci right 3.258852e-01	k: 113516	n:350000
KS ci ratio: 2.921040e-01	ci left: 4.392640e-04	ci right 5.920608e-04	k: 179	n:350000
PDYN   350000 perm   108 sec   (3239 perm/sec)   p_kst 5.114286e-04   p_cons 3.243314e-01   p_joint 1.297143e-03

Joint ci ratio: 1.874049e-01	ci left: 1.100143e-03	ci right 1.330229e-03	k: 436	n:360000
Cons ci ratio: 9.429442e-03	ci left: 3.228208e-01	ci right 3.258820e-01	k: 116766	n:360000
KS ci ratio: 2.858203e-01	ci left: 4.476745e-04	ci right 5.994425e-04	k: 187	n:360000
PDYN   360000 perm   112 sec   (3202 perm/sec)   p_kst 5.194444e-04   p_cons 3.243500e-01   p_joint 1.211111e-03

Joint ci ratio: 1.861330e-01	ci left: 1.085867e-03	ci right 1.311251e-03	k: 442	n:370000
Cons ci ratio: 9.299167e-03	ci left: 3.229348e-01	ci right 3.259545e-01	k: 120044	n:370000
KS ci ratio: 2.828278e-01	ci left: 4.456151e-04	ci right 5.948211e-04	k: 191	n:370000
PDYN   370000 perm   117 sec   (3166 perm/sec)   p_kst 5.162162e-04   p_cons 3.244432e-01   p_joint 1.194595e-03

Joint ci ratio: 1.882756e-01	ci left: 1.032206e-03	ci right 1.249201e-03	k: 432	n:380000
Cons ci ratio: 9.176185e-03	ci left: 3.229457e-01	ci right 3.259254e-01	k: 123285	n:380000
KS ci ratio: 2.778083e-01	ci left: 4.510149e-04	ci right 5.988802e-04	k: 198	n:380000
PDYN   380000 perm   121 sec   (3130 perm/sec)   p_kst 5.210526e-04   p_cons 3.244342e-01   p_joint 1.136842e-03

Joint ci ratio: 1.878445e-01	ci left: 1.010625e-03	ci right 1.222541e-03	k: 434	n:390000
Cons ci ratio: 9.060500e-03	ci left: 3.228334e-01	ci right 3.257743e-01	k: 126478	n:390000
KS ci ratio: 2.757384e-01	ci left: 4.466088e-04	ci right 5.917493e-04	k: 201	n:390000
PDYN   390000 perm   126 sec   (3096 perm/sec)   p_kst 5.153846e-04   p_cons 3.243026e-01   p_joint 1.112821e-03

Joint ci ratio: 1.859315e-01	ci left: 1.006806e-03	ci right 1.215529e-03	k: 443	n:400000
Cons ci ratio: 8.946121e-03	ci left: 3.228718e-01	ci right 3.257757e-01	k: 129729	n:400000
KS ci ratio: 2.723880e-01	ci left: 4.470847e-04	ci right 5.903124e-04	k: 206	n:400000
PDYN   400000 perm   131 sec   (3062 perm/sec)   p_kst 5.150000e-04   p_cons 3.243225e-01   p_joint 1.107500e-03

Joint ci ratio: 1.876339e-01	ci left: 9.636481e-04	ci right 1.165461e-03	k: 435	n:410000
Cons ci ratio: 8.834640e-03	ci left: 3.229743e-01	ci right 3.258428e-01	k: 133007	n:410000
KS ci ratio: 2.691568e-01	ci left: 4.475475e-04	ci right 5.889355e-04	k: 211	n:410000
PDYN   410000 perm   135 sec   (3029 perm/sec)   p_kst 5.146341e-04   p_cons 3.244073e-01   p_joint 1.060976e-03

Joint ci ratio: 1.861464e-01	ci left: 9.565906e-04	ci right 1.155158e-03	k: 442	n:420000
Cons ci ratio: 8.728600e-03	ci left: 3.230032e-01	ci right 3.258373e-01	k: 136256	n:420000
KS ci ratio: 2.666533e-01	ci left: 4.457757e-04	ci right 5.850753e-04	k: 215	n:420000
PDYN   420000 perm   140 sec   (2999 perm/sec)   p_kst 5.119048e-04   p_cons 3.244190e-01   p_joint 1.052381e-03

Joint ci ratio: 1.851059e-01	ci left: 9.454314e-04	ci right 1.140462e-03	k: 447	n:430000
Cons ci ratio: 8.626837e-03	ci left: 3.230031e-01	ci right 3.258039e-01	k: 139493	n:430000
KS ci ratio: 2.624342e-01	ci left: 4.506086e-04	ci right 5.888248e-04	k: 222	n:430000
PDYN   430000 perm   145 sec   (2967 perm/sec)   p_kst 5.162791e-04   p_cons 3.244023e-01   p_joint 1.039535e-03

Joint ci ratio: 1.891669e-01	ci left: 8.827825e-04	ci right 1.069344e-03	k: 428	n:440000
Cons ci ratio: 8.529703e-03	ci left: 3.229441e-01	ci right 3.257128e-01	k: 142704	n:440000
KS ci ratio: 2.612662e-01	ci left: 4.446145e-04	ci right 5.802858e-04	k: 224	n:440000
PDYN   440000 perm   150 sec   (2937 perm/sec)   p_kst 5.090909e-04   p_cons 3.243273e-01   p_joint 9.727273e-04

Joint ci ratio: 1.867871e-01	ci left: 8.864594e-04	ci right 1.071174e-03	k: 439	n:450000
Cons ci ratio: 8.434024e-03	ci left: 3.229789e-01	ci right 3.257167e-01	k: 145956	n:450000
KS ci ratio: 2.584108e-01	ci left: 4.451216e-04	ci right 5.792237e-04	k: 229	n:450000
PDYN   450000 perm   155 sec   (2908 perm/sec)   p_kst 5.088889e-04   p_cons 3.243467e-01   p_joint 9.755556e-04

Joint ci ratio: 1.855272e-01	ci left: 8.796239e-04	ci right 1.061539e-03	k: 445	n:460000
Cons ci ratio: 8.343729e-03	ci left: 3.228951e-01	ci right 3.256027e-01	k: 149154	n:460000
KS ci ratio: 2.561930e-01	ci left: 4.435799e-04	ci right 5.758872e-04	k: 233	n:460000
PDYN   460000 perm   160 sec   (2880 perm/sec)   p_kst 5.065217e-04   p_cons 3.242478e-01   p_joint 9.673913e-04

Joint ci ratio: 1.844968e-01	ci left: 8.710537e-04	ci right 1.050084e-03	k: 450	n:470000
Cons ci ratio: 8.253947e-03	ci left: 3.229384e-01	ci right 3.256170e-01	k: 152410	n:470000
KS ci ratio: 2.540312e-01	ci left: 4.421085e-04	ci right 5.726880e-04	k: 237	n:470000
PDYN   470000 perm   165 sec   (2852 perm/sec)   p_kst 5.042553e-04   p_cons 3.242766e-01   p_joint 9.574468e-04

Joint ci ratio: 1.844987e-01	ci left: 8.529060e-04	ci right 1.028208e-03	k: 450	n:480000
Cons ci ratio: 8.169760e-03	ci left: 3.228322e-01	ci right 3.254825e-01	k: 155595	n:480000
KS ci ratio: 2.524457e-01	ci left: 4.387512e-04	ci right 5.674030e-04	k: 240	n:480000
PDYN   480000 perm   170 sec   (2826 perm/sec)   p_kst 5.000000e-04   p_cons 3.241562e-01   p_joint 9.375000e-04

Joint ci ratio: 1.820916e-01	ci left: 8.588662e-04	ci right 1.032836e-03	k: 462	n:490000
Cons ci ratio: 8.088625e-03	ci left: 3.227019e-01	ci right 3.253247e-01	k: 158766	n:490000
KS ci ratio: 2.514055e-01	ci left: 4.336209e-04	ci right 5.601624e-04	k: 242	n:490000
PDYN   490000 perm   175 sec   (2800 perm/sec)   p_kst 4.938776e-04   p_cons 3.240122e-01   p_joint 9.428571e-04

Joint ci ratio: 1.801563e-01	ci left: 8.607822e-04	ci right 1.033085e-03	k: 472	n:500000
Cons ci ratio: 8.008249e-03	ci left: 3.226649e-01	ci right 3.252612e-01	k: 161981	n:500000
KS ci ratio: 2.483578e-01	ci left: 4.361971e-04	ci right 5.617089e-04	k: 248	n:500000
PDYN   500000 perm   180 sec   (2774 perm/sec)   p_kst 4.960000e-04   p_cons 3.239620e-01   p_joint 9.440000e-04

Joint ci ratio: 1.794003e-01	ci left: 8.513939e-04	ci right 1.021025e-03	k: 476	n:510000
Cons ci ratio: 7.927419e-03	ci left: 3.227842e-01	ci right 3.253551e-01	k: 165275	n:510000
KS ci ratio: 2.468755e-01	ci left: 4.331615e-04	ci right 5.569418e-04	k: 251	n:510000
PDYN   510000 perm   186 sec   (2748 perm/sec)   p_kst 4.921569e-04   p_cons 3.240686e-01   p_joint 9.333333e-04

Joint ci ratio: 1.775488e-01	ci left: 8.533927e-04	ci right 1.021478e-03	k: 486	n:520000
Cons ci ratio: 7.850263e-03	ci left: 3.228279e-01	ci right 3.253741e-01	k: 168532	n:520000
KS ci ratio: 2.449394e-01	ci left: 4.320497e-04	ci right 5.543968e-04	k: 255	n:520000
PDYN   520000 perm   191 sec   (2723 perm/sec)   p_kst 4.903846e-04   p_cons 3.241000e-01   p_joint 9.346154e-04

Joint ci ratio: 1.801612e-01	ci left: 8.120568e-04	ci right 9.746109e-04	k: 472	n:530000
Cons ci ratio: 7.774244e-03	ci left: 3.229304e-01	ci right 3.254526e-01	k: 171821	n:530000
KS ci ratio: 2.425819e-01	ci left: 4.327556e-04	ci right 5.539455e-04	k: 260	n:530000
PDYN   530000 perm   196 sec   (2699 perm/sec)   p_kst 4.905660e-04   p_cons 3.241906e-01   p_joint 8.905660e-04

Joint ci ratio: 1.784712e-01	ci left: 8.129373e-04	ci right 9.739765e-04	k: 481	n:540000
Cons ci ratio: 7.697822e-03	ci left: 3.231754e-01	ci right 3.256746e-01	k: 175189	n:540000
KS ci ratio: 2.402912e-01	ci left: 4.334408e-04	ci right 5.535056e-04	k: 265	n:540000
PDYN   540000 perm   202 sec   (2674 perm/sec)   p_kst 4.907407e-04   p_cons 3.244241e-01   p_joint 8.907407e-04

Joint ci ratio: 1.771895e-01	ci left: 8.103173e-04	ci right 9.695612e-04	k: 488	n:550000
Cons ci ratio: 7.626106e-03	ci left: 3.232681e-01	ci right 3.257446e-01	k: 178478	n:550000
KS ci ratio: 2.380642e-01	ci left: 4.341062e-04	ci right 5.530765e-04	k: 270	n:550000
PDYN   550000 perm   208 sec   (2649 perm/sec)   p_kst 4.909091e-04   p_cons 3.245055e-01   p_joint 8.872727e-04

Joint ci ratio: 1.759351e-01	ci left: 8.077949e-04	ci right 9.652996e-04	k: 495	n:560000
Cons ci ratio: 7.559867e-03	ci left: 3.231543e-01	ci right 3.256083e-01	k: 181653	n:560000
KS ci ratio: 2.363266e-01	ci left: 4.330727e-04	ci right 5.507668e-04	k: 274	n:560000
PDYN   560000 perm   213 sec   (2626 perm/sec)   p_kst 4.892857e-04   p_cons 3.243804e-01   p_joint 8.839286e-04

Joint ci ratio: 1.738442e-01	ci left: 8.137543e-04	ci right 9.703375e-04	k: 507	n:570000
Cons ci ratio: 7.493973e-03	ci left: 3.231233e-01	ci right 3.255556e-01	k: 184873	n:570000
KS ci ratio: 2.333746e-01	ci left: 4.370332e-04	ci right 5.541060e-04	k: 281	n:570000
PDYN   570000 perm   219 sec   (2601 perm/sec)   p_kst 4.929825e-04   p_cons 3.243386e-01   p_joint 8.894737e-04

Joint ci ratio: 1.724914e-01	ci left: 8.129193e-04	ci right 9.679979e-04	k: 515	n:580000
Cons ci ratio: 7.428867e-03	ci left: 3.231470e-01	ci right 3.255582e-01	k: 188124	n:580000
KS ci ratio: 2.305306e-01	ci left: 4.408660e-04	ci right 5.573213e-04	k: 288	n:580000
PDYN   580000 perm   225 sec   (2577 perm/sec)   p_kst 4.965517e-04   p_cons 3.243517e-01   p_joint 8.879310e-04

Joint ci ratio: 1.735053e-01	ci left: 7.894111e-04	ci right 9.409829e-04	k: 509	n:590000
Cons ci ratio: 7.365514e-03	ci left: 3.231648e-01	ci right 3.255555e-01	k: 191372	n:590000
KS ci ratio: 2.281740e-01	ci left: 4.429789e-04	ci right 5.586279e-04	k: 294	n:590000
PDYN   590000 perm   231 sec   (2555 perm/sec)   p_kst 4.983051e-04   p_cons 3.243593e-01   p_joint 8.627119e-04

Joint ci ratio: 1.723270e-01	ci left: 7.874159e-04	ci right 9.374710e-04	k: 516	n:600000
Cons ci ratio: 7.305977e-03	ci left: 3.230489e-01	ci right 3.254194e-01	k: 194540	n:600000
KS ci ratio: 2.277890e-01	ci left: 4.371673e-04	ci right 5.510793e-04	k: 295	n:600000
PDYN   600000 perm   237 sec   (2532 perm/sec)   p_kst 4.916667e-04   p_cons 3.242333e-01   p_joint 8.600000e-04

Joint ci ratio: 1.713360e-01	ci left: 7.839203e-04	ci right 9.323615e-04	k: 522	n:610000
Cons ci ratio: 7.246315e-03	ci left: 3.230303e-01	ci right 3.253812e-01	k: 197765	n:610000
KS ci ratio: 2.255146e-01	ci left: 4.392783e-04	ci right 5.524387e-04	k: 301	n:610000
PDYN   610000 perm   243 sec   (2507 perm/sec)   p_kst 4.934426e-04   p_cons 3.242049e-01   p_joint 8.557377e-04

Joint ci ratio: 1.797929e-01	ci left: 6.972543e-04	ci right 8.365111e-04	k: 474	n:620000
Cons ci ratio: 7.186557e-03	ci left: 3.231058e-01	ci right 3.254378e-01	k: 201048	n:620000
KS ci ratio: 2.244031e-01	ci left: 4.367592e-04	ci right 5.486395e-04	k: 304	n:620000
PDYN   620000 perm   249 sec   (2485 perm/sec)   p_kst 4.903226e-04   p_cons 3.242710e-01   p_joint 7.645161e-04

Joint ci ratio: 1.807485e-01	ci left: 6.786078e-04	ci right 8.149396e-04	k: 469	n:630000
Cons ci ratio: 7.129905e-03	ci left: 3.230775e-01	ci right 3.253908e-01	k: 204267	n:630000
KS ci ratio: 2.233079e-01	ci left: 4.343213e-04	ci right 5.449595e-04	k: 307	n:630000
PDYN   630000 perm   256 sec   (2464 perm/sec)   p_kst 4.873016e-04   p_cons 3.242333e-01   p_joint 7.444444e-04

Joint ci ratio: 1.797950e-01	ci left: 6.754644e-04	ci right 8.103710e-04	k: 474	n:640000
Cons ci ratio: 7.075178e-03	ci left: 3.230127e-01	ci right 3.253077e-01	k: 207462	n:640000
KS ci ratio: 2.229470e-01	ci left: 4.290101e-04	ci right 5.380944e-04	k: 308	n:640000
PDYN   640000 perm   262 sec   (2444 perm/sec)   p_kst 4.812500e-04   p_cons 3.241594e-01   p_joint 7.406250e-04

Joint ci ratio: 1.807506e-01	ci left: 6.577269e-04	ci right 7.898654e-04	k: 469	n:650000
Cons ci ratio: 7.018463e-03	ci left: 3.231513e-01	ci right 3.254288e-01	k: 210788	n:650000
KS ci ratio: 2.218729e-01	ci left: 4.267681e-04	ci right 5.346881e-04	k: 311	n:650000
PDYN   650000 perm   268 sec   (2423 perm/sec)   p_kst 4.784615e-04   p_cons 3.242892e-01   p_joint 7.215385e-04

Joint ci ratio: 1.794195e-01	ci left: 6.578893e-04	ci right 7.889814e-04	k: 476	n:660000
Cons ci ratio: 6.963908e-03	ci left: 3.232342e-01	ci right 3.254946e-01	k: 214080	n:660000
KS ci ratio: 2.204643e-01	ci left: 4.260268e-04	ci right 5.329827e-04	k: 315	n:660000
PDYN   660000 perm   275 sec   (2402 perm/sec)   p_kst 4.772727e-04   p_cons 3.243636e-01   p_joint 7.212121e-04

Joint ci ratio: 1.827081e-01	ci left: 6.238458e-04	ci right 7.506851e-04	k: 459	n:670000
Cons ci ratio: 6.911641e-03	ci left: 3.232492e-01	ci right 3.254926e-01	k: 217328	n:670000
KS ci ratio: 2.197703e-01	ci left: 4.224886e-04	ci right 5.281772e-04	k: 317	n:670000
PDYN   670000 perm   281 sec   (2382 perm/sec)   p_kst 4.731343e-04   p_cons 3.243701e-01   p_joint 6.850746e-04

Joint ci ratio: 1.819192e-01	ci left: 6.202854e-04	ci right 7.457963e-04	k: 463	n:680000
Cons ci ratio: 6.861270e-03	ci left: 3.232168e-01	ci right 3.254435e-01	k: 220544	n:680000
KS ci ratio: 2.184012e-01	ci left: 4.218351e-04	ci right 5.266145e-04	k: 321	n:680000
PDYN   680000 perm   288 sec   (2363 perm/sec)   p_kst 4.720588e-04   p_cons 3.243294e-01   p_joint 6.808824e-04

Joint ci ratio: 1.801799e-01	ci left: 6.237482e-04	ci right 7.486215e-04	k: 472	n:690000
Cons ci ratio: 6.810723e-03	ci left: 3.232664e-01	ci right 3.254771e-01	k: 223816	n:690000
KS ci ratio: 2.154108e-01	ci left: 4.280567e-04	ci right 5.327332e-04	k: 330	n:690000
PDYN   690000 perm   294 sec   (2344 perm/sec)   p_kst 4.782609e-04   p_cons 3.243710e-01   p_joint 6.840580e-04

Joint ci ratio: 1.790480e-01	ci left: 6.230236e-04	ci right 7.468833e-04	k: 478	n:700000
Cons ci ratio: 6.762334e-03	ci left: 3.232462e-01	ci right 3.254409e-01	k: 227040	n:700000
KS ci ratio: 2.147634e-01	ci left: 4.246447e-04	ci right 5.281337e-04	k: 332	n:700000
PDYN   700000 perm   301 sec   (2325 perm/sec)   p_kst 4.742857e-04   p_cons 3.243429e-01   p_joint 6.828571e-04

Joint ci ratio: 1.770263e-01	ci left: 6.290513e-04	ci right 7.525463e-04	k: 489	n:710000
Cons ci ratio: 6.714920e-03	ci left: 3.232295e-01	ci right 3.254086e-01	k: 230266	n:710000
KS ci ratio: 2.134852e-01	ci left: 4.239955e-04	ci right 5.266306e-04	k: 336	n:710000
PDYN   710000 perm   308 sec   (2306 perm/sec)   p_kst 4.732394e-04   p_cons 3.243183e-01   p_joint 6.887324e-04

Joint ci ratio: 1.761302e-01	ci left: 6.269520e-04	ci right 7.493454e-04	k: 494	n:720000
Cons ci ratio: 6.668277e-03	ci left: 3.232271e-01	ci right 3.253910e-01	k: 233502	n:720000
KS ci ratio: 2.119188e-01	ci left: 4.246812e-04	ci right 5.266301e-04	k: 341	n:720000
PDYN   720000 perm   315 sec   (2288 perm/sec)   p_kst 4.736111e-04   p_cons 3.243083e-01   p_joint 6.861111e-04

Joint ci ratio: 1.781226e-01	ci left: 6.039625e-04	ci right 7.233454e-04	k: 483	n:730000
Cons ci ratio: 6.622118e-03	ci left: 3.232563e-01	ci right 3.254054e-01	k: 236761	n:730000
KS ci ratio: 2.082950e-01	ci left: 4.344374e-04	ci right 5.367177e-04	k: 353	n:730000
PDYN   730000 perm   322 sec   (2270 perm/sec)   p_kst 4.835616e-04   p_cons 3.243301e-01   p_joint 6.616438e-04

Joint ci ratio: 1.763101e-01	ci left: 6.087151e-04	ci right 7.276826e-04	k: 493	n:740000
Cons ci ratio: 6.577126e-03	ci left: 3.232699e-01	ci right 3.254044e-01	k: 240009	n:740000
KS ci ratio: 2.068394e-01	ci left: 4.349722e-04	ci right 5.365722e-04	k: 358	n:740000
PDYN   740000 perm   329 sec   (2253 perm/sec)   p_kst 4.837838e-04   p_cons 3.243365e-01   p_joint 6.662162e-04

Joint ci ratio: 1.772106e-01	ci left: 5.942267e-04	ci right 7.110193e-04	k: 488	n:750000
Cons ci ratio: 6.533577e-03	ci left: 3.232473e-01	ci right 3.253674e-01	k: 243230	n:750000
KS ci ratio: 2.056967e-01	ci left: 4.342304e-04	ci right 5.350264e-04	k: 362	n:750000
PDYN   750000 perm   336 sec   (2235 perm/sec)   p_kst 4.826667e-04   p_cons 3.243067e-01   p_joint 6.506667e-04

Joint ci ratio: 1.763117e-01	ci left: 5.926958e-04	ci right 7.085336e-04	k: 493	n:760000
Cons ci ratio: 6.491835e-03	ci left: 3.231608e-01	ci right 3.252668e-01	k: 246402	n:760000
KS ci ratio: 2.045728e-01	ci left: 4.335097e-04	ci right 5.335197e-04	k: 366	n:760000
PDYN   760000 perm   343 sec   (2218 perm/sec)   p_kst 4.815789e-04   p_cons 3.242132e-01   p_joint 6.486842e-04

Joint ci ratio: 1.752507e-01	ci left: 5.924478e-04	ci right 7.074666e-04	k: 499	n:770000
Cons ci ratio: 6.449565e-03	ci left: 3.231662e-01	ci right 3.252585e-01	k: 249643	n:770000
KS ci ratio: 2.031933e-01	ci left: 4.340417e-04	ci right 5.334154e-04	k: 371	n:770000
PDYN   770000 perm   350 sec   (2200 perm/sec)   p_kst 4.818182e-04   p_cons 3.242117e-01   p_joint 6.480519e-04

Joint ci ratio: 1.775766e-01	ci left: 5.689210e-04	ci right 6.809955e-04	k: 486	n:780000
Cons ci ratio: 6.406985e-03	ci left: 3.232484e-01	ci right 3.253273e-01	k: 252944	n:780000
KS ci ratio: 2.021097e-01	ci left: 4.333450e-04	ci right 5.319649e-04	k: 375	n:780000
PDYN   780000 perm   357 sec   (2183 perm/sec)   p_kst 4.807692e-04   p_cons 3.242872e-01   p_joint 6.230769e-04

Joint ci ratio: 1.781271e-01	ci left: 5.580907e-04	ci right 6.684093e-04	k: 483	n:790000
Cons ci ratio: 6.366211e-03	ci left: 3.232614e-01	ci right 3.253272e-01	k: 256192	n:790000
KS ci ratio: 2.010433e-01	ci left: 4.326674e-04	ci right 5.305497e-04	k: 379	n:790000
PDYN   790000 perm   365 sec   (2167 perm/sec)   p_kst 4.797468e-04   p_cons 3.242937e-01   p_joint 6.113924e-04

Joint ci ratio: 1.979413e-01	ci left: 4.415100e-04	ci right 5.396658e-04	k: 391	n:800000
Cons ci ratio: 6.327072e-03	ci left: 3.232143e-01	ci right 3.252670e-01	k: 259392	n:800000
KS ci ratio: 1.997335e-01	ci left: 4.331954e-04	ci right 5.304810e-04	k: 384	n:800000
PDYN   800000 perm   372 sec   (2151 perm/sec)   p_kst 4.800000e-04   p_cons 3.242400e-01   p_joint 4.887500e-04

Joint ci ratio: 2.010445e-01	ci left: 4.219840e-04	ci right 5.174500e-04	k: 379	n:810000
Cons ci ratio: 6.288238e-03	ci left: 3.231967e-01	ci right 3.252367e-01	k: 262615	n:810000
KS ci ratio: 1.987040e-01	ci left: 4.325393e-04	ci right 5.291161e-04	k: 388	n:810000
PDYN   810000 perm   379 sec   (2136 perm/sec)   p_kst 4.790123e-04   p_cons 3.242160e-01   p_joint 4.679012e-04

Joint ci ratio: 2.015764e-01	ci left: 4.145216e-04	ci right 5.085781e-04	k: 377	n:820000
Cons ci ratio: 6.248911e-03	ci left: 3.232637e-01	ci right 3.252912e-01	k: 265907	n:820000
KS ci ratio: 1.964440e-01	ci left: 4.376972e-04	ci right 5.341812e-04	k: 397	n:820000
PDYN   820000 perm   387 sec   (2119 perm/sec)   p_kst 4.841463e-04   p_cons 3.242768e-01   p_joint 4.597561e-04

Joint ci ratio: 2.010456e-01	ci left: 4.118155e-04	ci right 5.049816e-04	k: 379	n:830000
Cons ci ratio: 6.211594e-03	ci left: 3.232388e-01	ci right 3.252540e-01	k: 269124	n:830000
KS ci ratio: 1.964446e-01	ci left: 4.324236e-04	ci right 5.277454e-04	k: 397	n:830000
PDYN   830000 perm   395 sec   (2104 perm/sec)   p_kst 4.783133e-04   p_cons 3.242458e-01   p_joint 4.566265e-04

Joint ci ratio: 1.987057e-01	ci left: 4.170911e-04	ci right 5.102196e-04	k: 388	n:840000
Cons ci ratio: 6.174349e-03	ci left: 3.232561e-01	ci right 3.252594e-01	k: 272376	n:840000
KS ci ratio: 1.947393e-01	ci left: 4.352011e-04	ci right 5.302036e-04	k: 404	n:840000
PDYN   840000 perm   402 sec   (2088 perm/sec)   p_kst 4.809524e-04   p_cons 3.242571e-01   p_joint 4.619048e-04

Joint ci ratio: 2.002574e-01	ci left: 4.054776e-04	ci right 4.968064e-04	k: 382	n:850000
Cons ci ratio: 6.138064e-03	ci left: 3.232520e-01	ci right 3.252434e-01	k: 275610	n:850000
KS ci ratio: 1.942605e-01	ci left: 4.323194e-04	ci right 5.264333e-04	k: 406	n:850000
PDYN   850000 perm   410 sec   (2073 perm/sec)   p_kst 4.776471e-04   p_cons 3.242471e-01   p_joint 4.494118e-04

Joint ci ratio: 1.976925e-01	ci left: 4.118116e-04	ci right 5.032358e-04	k: 392	n:860000
Cons ci ratio: 6.101941e-03	ci left: 3.232816e-01	ci right 3.252614e-01	k: 278873	n:860000
KS ci ratio: 1.921472e-01	ci left: 4.372514e-04	ci right 5.312826e-04	k: 415	n:860000
PDYN   860000 perm   418 sec   (2058 perm/sec)   p_kst 4.825581e-04   p_cons 3.242709e-01   p_joint 4.558140e-04

Joint ci ratio: 1.962003e-01	ci left: 4.136346e-04	ci right 5.046877e-04	k: 398	n:870000
Cons ci ratio: 6.066289e-03	ci left: 3.233221e-01	ci right 3.252906e-01	k: 282146	n:870000
KS ci ratio: 1.914583e-01	ci left: 4.355082e-04	ci right 5.287896e-04	k: 418	n:870000
PDYN   870000 perm   426 sec   (2044 perm/sec)   p_kst 4.804598e-04   p_cons 3.243057e-01   p_joint 4.574713e-04

Joint ci ratio: 1.952243e-01	ci left: 4.132570e-04	ci right 5.037205e-04	k: 402	n:880000
Cons ci ratio: 6.032162e-03	ci left: 3.232959e-01	ci right 3.252530e-01	k: 285361	n:880000
KS ci ratio: 1.910033e-01	ci left: 4.327231e-04	ci right 5.251621e-04	k: 420	n:880000
PDYN   880000 perm   433 sec   (2030 perm/sec)   p_kst 4.772727e-04   p_cons 3.242739e-01   p_joint 4.568182e-04

Joint ci ratio: 1.933146e-01	ci left: 4.171653e-04	ci right 5.074860e-04	k: 410	n:890000
Cons ci ratio: 5.998404e-03	ci left: 3.232848e-01	ci right 3.252309e-01	k: 288589	n:890000
KS ci ratio: 1.887739e-01	ci left: 4.385630e-04	ci right 5.310307e-04	k: 430	n:890000
PDYN   890000 perm   441 sec   (2017 perm/sec)   p_kst 4.831461e-04   p_cons 3.242573e-01   p_joint 4.606742e-04

Joint ci ratio: 1.916888e-01	ci left: 4.199331e-04	ci right 5.099994e-04	k: 417	n:900000
Cons ci ratio: 5.965979e-03	ci left: 3.232174e-01	ci right 3.251526e-01	k: 291766	n:900000
KS ci ratio: 1.874734e-01	ci left: 4.400428e-04	ci right 5.321106e-04	k: 436	n:900000
PDYN   900000 perm   449 sec   (2003 perm/sec)   p_kst 4.844444e-04   p_cons 3.241844e-01   p_joint 4.633333e-04

Joint ci ratio: 1.907783e-01	ci left: 4.195036e-04	ci right 5.090008e-04	k: 421	n:910000
Cons ci ratio: 5.934475e-03	ci left: 3.231219e-01	ci right 3.250462e-01	k: 294916	n:910000
KS ci ratio: 1.866213e-01	ci left: 4.393970e-04	ci right 5.308644e-04	k: 440	n:910000
PDYN   910000 perm   457 sec   (1990 perm/sec)   p_kst 4.835165e-04   p_cons 3.240835e-01   p_joint 4.626374e-04

Joint ci ratio: 1.894362e-01	ci left: 4.211552e-04	ci right 5.102999e-04	k: 427	n:920000
Cons ci ratio: 5.902674e-03	ci left: 3.230871e-01	ci right 3.250009e-01	k: 298120	n:920000
KS ci ratio: 1.849510e-01	ci left: 4.429122e-04	ci right 5.341937e-04	k: 448	n:920000
PDYN   920000 perm   466 sec   (1976 perm/sec)   p_kst 4.869565e-04   p_cons 3.240435e-01   p_joint 4.641304e-04

Joint ci ratio: 1.898810e-01	ci left: 4.145781e-04	ci right 5.025604e-04	k: 425	n:930000
Cons ci ratio: 5.872013e-03	ci left: 3.230059e-01	ci right 3.249092e-01	k: 301280	n:930000
KS ci ratio: 1.835257e-01	ci left: 4.453295e-04	ci right 5.363232e-04	k: 455	n:930000
PDYN   930000 perm   474 sec   (1963 perm/sec)   p_kst 4.892473e-04   p_cons 3.239570e-01   p_joint 4.569892e-04

Joint ci ratio: 1.887764e-01	ci left: 4.152347e-04	ci right 5.027850e-04	k: 430	n:940000
Cons ci ratio: 5.839058e-03	ci left: 3.231337e-01	ci right 3.250270e-01	k: 304635	n:940000
KS ci ratio: 1.827261e-01	ci left: 4.446522e-04	ci right 5.350678e-04	k: 459	n:940000
PDYN   940000 perm   482 sec   (1950 perm/sec)   p_kst 4.882979e-04   p_cons 3.240798e-01   p_joint 4.574468e-04

Joint ci ratio: 1.876908e-01	ci left: 4.158790e-04	ci right 5.030034e-04	k: 435	n:950000
Cons ci ratio: 5.808270e-03	ci left: 3.231368e-01	ci right 3.250201e-01	k: 307874	n:950000
KS ci ratio: 1.811573e-01	ci left: 4.480093e-04	ci right 5.382396e-04	k: 467	n:950000
PDYN   950000 perm   490 sec   (1937 perm/sec)   p_kst 4.915789e-04   p_cons 3.240779e-01   p_joint 4.578947e-04

Joint ci ratio: 1.864124e-01	ci left: 4.175043e-04	ci right 5.043061e-04	k: 441	n:960000
Cons ci ratio: 5.778074e-03	ci left: 3.231315e-01	ci right 3.250050e-01	k: 311105	n:960000
KS ci ratio: 1.807718e-01	ci left: 4.453314e-04	ci right 5.348106e-04	k: 469	n:960000
PDYN   960000 perm   499 sec   (1924 perm/sec)   p_kst 4.885417e-04   p_cons 3.240677e-01   p_joint 4.593750e-04

Joint ci ratio: 1.414870e-01	ci left: 7.347703e-04	ci right 8.476266e-04	k: 766	n:970000
Cons ci ratio: 5.747884e-03	ci left: 3.231614e-01	ci right 3.250252e-01	k: 314370	n:970000
KS ci ratio: 1.798178e-01	ci left: 4.456624e-04	ci right 5.346841e-04	k: 474	n:970000
PDYN   970000 perm   508 sec   (1911 perm/sec)   p_kst 4.886598e-04   p_cons 3.240928e-01   p_joint 7.896907e-04

Joint ci ratio: 1.410282e-01	ci left: 7.321943e-04	ci right 8.442596e-04	k: 771	n:980000
Cons ci ratio: 5.717990e-03	ci left: 3.232039e-01	ci right 3.250583e-01	k: 317648	n:980000
KS ci ratio: 1.792528e-01	ci left: 4.440385e-04	ci right 5.324269e-04	k: 477	n:980000
PDYN   980000 perm   516 sec   (1899 perm/sec)   p_kst 4.867347e-04   p_cons 3.241306e-01   p_joint 7.867347e-04

Joint ci ratio: 1.410288e-01	ci left: 7.247982e-04	ci right 8.357320e-04	k: 771	n:990000
Cons ci ratio: 5.689042e-03	ci left: 3.232083e-01	ci right 3.250533e-01	k: 320889	n:990000
KS ci ratio: 1.781382e-01	ci left: 4.453428e-04	ci right 5.333802e-04	k: 483	n:990000
PDYN   990000 perm   525 sec   (1886 perm/sec)   p_kst 4.878788e-04   p_cons 3.241303e-01   p_joint 7.787879e-04

Joint ci ratio: 1.435641e-01	ci left: 6.915105e-04	ci right 7.994152e-04	k: 744	n:1000000
Cons ci ratio: 5.661692e-03	ci left: 3.231227e-01	ci right 3.249583e-01	k: 324040	n:1000000
KS ci ratio: 1.772251e-01	ci left: 4.456670e-04	ci right 5.332685e-04	k: 488	n:1000000
PDYN   1000000 perm   534 sec   (1873 perm/sec)   p_kst 4.880000e-04   p_cons 3.240400e-01   p_joint 7.440000e-04

Joint ci ratio: 1.433722e-01	ci left: 6.865728e-04	ci right 7.935516e-04	k: 746	n:1010000
Cons ci ratio: 5.633536e-03	ci left: 3.231318e-01	ci right 3.249583e-01	k: 327285	n:1010000
KS ci ratio: 1.759699e-01	ci left: 4.478788e-04	ci right 5.352253e-04	k: 495	n:1010000
PDYN   1010000 perm   543 sec   (1861 perm/sec)   p_kst 4.900990e-04   p_cons 3.240446e-01   p_joint 7.386139e-04

Joint ci ratio: 1.427051e-01	ci left: 6.864589e-04	ci right 7.928799e-04	k: 753	n:1020000
Cons ci ratio: 5.605733e-03	ci left: 3.231457e-01	ci right 3.249632e-01	k: 330535	n:1020000
KS ci ratio: 1.754403e-01	ci left: 4.462997e-04	ci right 5.330484e-04	k: 498	n:1020000
PDYN   1020000 perm   552 sec   (1849 perm/sec)   p_kst 4.882353e-04   p_cons 3.240539e-01   p_joint 7.382353e-04

Joint ci ratio: 1.417679e-01	ci left: 6.891575e-04	ci right 7.952359e-04	k: 763	n:1030000
Cons ci ratio: 5.578288e-03	ci left: 3.231631e-01	ci right 3.249718e-01	k: 333789	n:1030000
KS ci ratio: 1.750900e-01	ci left: 4.438232e-04	ci right 5.299001e-04	k: 500	n:1030000
PDYN   1030000 perm   561 sec   (1838 perm/sec)   p_kst 4.854369e-04   p_cons 3.240670e-01   p_joint 7.407767e-04

Joint ci ratio: 1.421413e-01	ci left: 6.788212e-04	ci right 7.836071e-04	k: 759	n:1040000
Cons ci ratio: 5.551400e-03	ci left: 3.231678e-01	ci right 3.249678e-01	k: 337030	n:1040000
KS ci ratio: 1.740508e-01	ci left: 4.450728e-04	ci right 5.308260e-04	k: 506	n:1040000
PDYN   1040000 perm   570 sec   (1826 perm/sec)   p_kst 4.865385e-04   p_cons 3.240673e-01   p_joint 7.298077e-04

Joint ci ratio: 1.426120e-01	ci left: 6.677637e-04	ci right 7.712131e-04	k: 754	n:1050000
Cons ci ratio: 5.524874e-03	ci left: 3.231743e-01	ci right 3.249657e-01	k: 340273	n:1050000
KS ci ratio: 1.731988e-01	ci left: 4.453890e-04	ci right 5.307391e-04	k: 511	n:1050000
PDYN   1050000 perm   579 sec   (1815 perm/sec)   p_kst 4.866667e-04   p_cons 3.240695e-01   p_joint 7.180952e-04

Joint ci ratio: 1.421423e-01	ci left: 6.660129e-04	ci right 7.688224e-04	k: 759	n:1060000
Cons ci ratio: 5.498038e-03	ci left: 3.232354e-01	ci right 3.250184e-01	k: 343574	n:1060000
KS ci ratio: 1.726938e-01	ci left: 4.438949e-04	ci right 5.286848e-04	k: 514	n:1060000
PDYN   1060000 perm   588 sec   (1803 perm/sec)   p_kst 4.849057e-04   p_cons 3.241264e-01   p_joint 7.160377e-04

Joint ci ratio: 1.415846e-01	ci left: 6.651970e-04	ci right 7.674436e-04	k: 765	n:1070000
Cons ci ratio: 5.472312e-03	ci left: 3.232375e-01	ci right 3.250121e-01	k: 346813	n:1070000
KS ci ratio: 1.720271e-01	ci left: 4.433234e-04	ci right 5.276432e-04	k: 518	n:1070000
PDYN   1070000 perm   597 sec   (1791 perm/sec)   p_kst 4.841121e-04   p_cons 3.241243e-01   p_joint 7.149533e-04

Joint ci ratio: 1.413084e-01	ci left: 6.617171e-04	ci right 7.632137e-04	k: 768	n:1080000
Cons ci ratio: 5.445886e-03	ci left: 3.233246e-01	ci right 3.250911e-01	k: 350144	n:1080000
KS ci ratio: 1.718619e-01	ci left: 4.401045e-04	ci right 5.237235e-04	k: 519	n:1080000
PDYN   1080000 perm   607 sec   (1780 perm/sec)   p_kst 4.805556e-04   p_cons 3.242074e-01   p_joint 7.111111e-04

Joint ci ratio: 1.404886e-01	ci left: 6.636122e-04	ci right 7.647595e-04	k: 777	n:1090000
Cons ci ratio: 5.420848e-03	ci left: 3.233286e-01	ci right 3.250870e-01	k: 353386	n:1090000
KS ci ratio: 1.705547e-01	ci left: 4.430919e-04	ci right 5.265722e-04	k: 527	n:1090000
PDYN   1090000 perm   616 sec   (1769 perm/sec)   p_kst 4.834862e-04   p_cons 3.242073e-01   p_joint 7.128440e-04

Joint ci ratio: 1.400394e-01	ci left: 6.619652e-04	ci right 7.625120e-04	k: 782	n:1100000
Cons ci ratio: 5.396219e-03	ci left: 3.233271e-01	ci right 3.250775e-01	k: 356622	n:1100000
KS ci ratio: 1.697528e-01	ci left: 4.434157e-04	ci right 5.265240e-04	k: 532	n:1100000
PDYN   1100000 perm   626 sec   (1759 perm/sec)   p_kst 4.836364e-04   p_cons 3.242018e-01   p_joint 7.109091e-04

Joint ci ratio: 1.396833e-01	ci left: 6.594790e-04	ci right 7.593723e-04	k: 786	n:1110000
Cons ci ratio: 5.371029e-03	ci left: 3.233986e-01	ci right 3.251411e-01	k: 359939	n:1110000
KS ci ratio: 1.691195e-01	ci left: 4.428717e-04	ci right 5.255369e-04	k: 536	n:1110000
PDYN   1110000 perm   635 sec   (1748 perm/sec)   p_kst 4.828829e-04   p_cons 3.242694e-01   p_joint 7.081081e-04

Joint ci ratio: 1.388040e-01	ci left: 6.622084e-04	ci right 7.618315e-04	k: 796	n:1120000
Cons ci ratio: 5.347136e-03	ci left: 3.233911e-01	ci right 3.251258e-01	k: 363169	n:1120000
KS ci ratio: 1.683376e-01	ci left: 4.431933e-04	ci right 5.254972e-04	k: 541	n:1120000
PDYN   1120000 perm   645 sec   (1737 perm/sec)   p_kst 4.830357e-04   p_cons 3.242580e-01   p_joint 7.107143e-04

Joint ci ratio: 1.424270e-01	ci left: 6.221941e-04	ci right 7.184482e-04	k: 756	n:1130000
Cons ci ratio: 5.322463e-03	ci left: 3.234741e-01	ci right 3.252012e-01	k: 366501	n:1130000
KS ci ratio: 1.668054e-01	ci left: 4.477498e-04	ci right 5.300670e-04	k: 551	n:1130000
PDYN   1130000 perm   654 sec   (1727 perm/sec)   p_kst 4.876106e-04   p_cons 3.243372e-01   p_joint 6.690265e-04

Joint ci ratio: 1.427107e-01	ci left: 6.141984e-04	ci right 7.094209e-04	k: 753	n:1140000
Cons ci ratio: 5.298392e-03	ci left: 3.235336e-01	ci right 3.252532e-01	k: 369808	n:1140000
KS ci ratio: 1.656095e-01	ci left: 4.505478e-04	ci right 5.327264e-04	k: 559	n:1140000
PDYN   1140000 perm   664 sec   (1716 perm/sec)   p_kst 4.903509e-04   p_cons 3.243930e-01   p_joint 6.605263e-04

Joint ci ratio: 1.420528e-01	ci left: 6.147277e-04	ci right 7.095556e-04	k: 760	n:1150000
Cons ci ratio: 5.275514e-03	ci left: 3.235201e-01	ci right 3.252321e-01	k: 373032	n:1150000
KS ci ratio: 1.647293e-01	ci left: 4.516318e-04	ci right 5.335268e-04	k: 565	n:1150000
PDYN   1150000 perm   674 sec   (1706 perm/sec)   p_kst 4.913043e-04   p_cons 3.243757e-01   p_joint 6.608696e-04

Joint ci ratio: 1.417739e-01	ci left: 6.119226e-04	ci right 7.061168e-04	k: 763	n:1160000
Cons ci ratio: 5.252692e-03	ci left: 3.235265e-01	ci right 3.252312e-01	k: 376279	n:1160000
KS ci ratio: 1.645842e-01	ci left: 4.485649e-04	ci right 5.298251e-04	k: 566	n:1160000
PDYN   1160000 perm   684 sec   (1696 perm/sec)   p_kst 4.879310e-04   p_cons 3.243784e-01   p_joint 6.577586e-04

Joint ci ratio: 1.412204e-01	ci left: 6.116392e-04	ci right 7.053913e-04	k: 769	n:1170000
Cons ci ratio: 5.231041e-03	ci left: 3.234595e-01	ci right 3.251568e-01	k: 379440	n:1170000
KS ci ratio: 1.632931e-01	ci left: 4.521078e-04	ci right 5.333042e-04	k: 575	n:1170000
PDYN   1170000 perm   694 sec   (1686 perm/sec)   p_kst 4.914530e-04   p_cons 3.243077e-01   p_joint 6.572650e-04

Joint ci ratio: 1.448424e-01	ci left: 5.754038e-04	ci right 6.660595e-04	k: 731	n:1180000
Cons ci ratio: 5.209263e-03	ci left: 3.234266e-01	ci right 3.251166e-01	k: 382640	n:1180000
KS ci ratio: 1.625889e-01	ci left: 4.523409e-04	ci right 5.331946e-04	k: 580	n:1180000
PDYN   1180000 perm   704 sec   (1676 perm/sec)   p_kst 4.915254e-04   p_cons 3.242712e-01   p_joint 6.194915e-04

Joint ci ratio: 1.441547e-01	ci left: 5.762382e-04	ci right 6.665572e-04	k: 738	n:1190000
Cons ci ratio: 5.187455e-03	ci left: 3.234195e-01	ci right 3.251024e-01	k: 385870	n:1190000
KS ci ratio: 1.623100e-01	ci left: 4.501520e-04	ci right 5.304630e-04	k: 582	n:1190000
PDYN   1190000 perm   714 sec   (1666 perm/sec)   p_kst 4.890756e-04   p_cons 3.242605e-01   p_joint 6.201681e-04

Joint ci ratio: 1.436696e-01	ci left: 5.754529e-04	ci right 6.653192e-04	k: 743	n:1200000
Cons ci ratio: 5.165910e-03	ci left: 3.234133e-01	ci right 3.250892e-01	k: 389101	n:1200000
KS ci ratio: 1.620325e-01	ci left: 4.479997e-04	ci right 5.277768e-04	k: 584	n:1200000
PDYN   1200000 perm   724 sec   (1657 perm/sec)   p_kst 4.866667e-04   p_cons 3.242508e-01   p_joint 6.191667e-04

Joint ci ratio: 1.429984e-01	ci left: 5.762747e-04	ci right 6.658131e-04	k: 750	n:1210000
Cons ci ratio: 5.144466e-03	ci left: 3.234213e-01	ci right 3.250903e-01	k: 392349	n:1210000
KS ci ratio: 1.612078e-01	ci left: 4.490554e-04	ci right 5.285740e-04	k: 590	n:1210000
PDYN   1210000 perm   734 sec   (1648 perm/sec)   p_kst 4.876033e-04   p_cons 3.242554e-01   p_joint 6.198347e-04

Joint ci ratio: 1.452415e-01	ci left: 5.533780e-04	ci right 6.408245e-04	k: 727	n:1220000
Cons ci ratio: 5.122817e-03	ci left: 3.234694e-01	ci right 3.251315e-01	k: 395646	n:1220000
KS ci ratio: 1.602614e-01	ci left: 4.508815e-04	ci right 5.302097e-04	k: 597	n:1220000
PDYN   1220000 perm   745 sec   (1639 perm/sec)   p_kst 4.893443e-04   p_cons 3.243000e-01   p_joint 5.959016e-04

Joint ci ratio: 1.446466e-01	ci left: 5.535801e-04	ci right 6.406693e-04	k: 733	n:1230000
Cons ci ratio: 5.101477e-03	ci left: 3.235134e-01	ci right 3.251688e-01	k: 398939	n:1230000
KS ci ratio: 1.599942e-01	ci left: 4.487767e-04	ci right 5.275902e-04	k: 599	n:1230000
PDYN   1230000 perm   755 sec   (1629 perm/sec)   p_kst 4.869919e-04   p_cons 3.243407e-01   p_joint 5.959350e-04

Joint ci ratio: 1.441565e-01	ci left: 5.530023e-04	ci right 6.396805e-04	k: 738	n:1240000
Cons ci ratio: 5.080420e-03	ci left: 3.235551e-01	ci right 3.252038e-01	k: 402230	n:1240000
KS ci ratio: 1.585471e-01	ci left: 4.536750e-04	ci right 5.325596e-04	k: 610	n:1240000
PDYN   1240000 perm   765 sec   (1620 perm/sec)   p_kst 4.919355e-04   p_cons 3.243790e-01   p_joint 5.951613e-04

Joint ci ratio: 1.438650e-01	ci left: 5.508918e-04	ci right 6.370495e-04	k: 741	n:1250000
Cons ci ratio: 5.059741e-03	ci left: 3.235857e-01	ci right 3.252279e-01	k: 405508	n:1250000
KS ci ratio: 1.580307e-01	ci left: 4.531188e-04	ci right 5.316258e-04	k: 614	n:1250000
PDYN   1250000 perm   776 sec   (1611 perm/sec)   p_kst 4.912000e-04   p_cons 3.244064e-01   p_joint 5.928000e-04

Joint ci ratio: 1.434788e-01	ci left: 5.495801e-04	ci right 6.352823e-04	k: 745	n:1260000
Cons ci ratio: 5.039177e-03	ci left: 3.236278e-01	ci right 3.252635e-01	k: 408801	n:1260000
KS ci ratio: 1.576468e-01	ci left: 4.518095e-04	ci right 5.298815e-04	k: 617	n:1260000
PDYN   1260000 perm   786 sec   (1602 perm/sec)   p_kst 4.896825e-04   p_cons 3.244452e-01   p_joint 5.912698e-04

Joint ci ratio: 1.430958e-01	ci left: 5.482894e-04	ci right 6.335425e-04	k: 749	n:1270000
Cons ci ratio: 5.019690e-03	ci left: 3.235968e-01	ci right 3.252260e-01	k: 412002	n:1270000
KS ci ratio: 1.571391e-01	ci left: 4.512775e-04	ci right 5.289827e-04	k: 621	n:1270000
PDYN   1270000 perm   797 sec   (1594 perm/sec)   p_kst 4.889764e-04   p_cons 3.244110e-01   p_joint 5.897638e-04

Joint ci ratio: 1.159977e-01	ci left: 8.396900e-04	ci right 9.438397e-04	k: 1140	n:1280000
Cons ci ratio: 4.999376e-03	ci left: 3.236585e-01	ci right 3.252814e-01	k: 415321	n:1280000
KS ci ratio: 1.563866e-01	ci left: 4.522556e-04	ci right 5.297213e-04	k: 627	n:1280000
PDYN   1280000 perm   807 sec   (1585 perm/sec)   p_kst 4.898438e-04   p_cons 3.244695e-01   p_joint 8.906250e-04

Joint ci ratio: 1.157951e-01	ci left: 8.361915e-04	ci right 9.397139e-04	k: 1144	n:1290000
Cons ci ratio: 4.980681e-03	ci left: 3.235983e-01	ci right 3.252149e-01	k: 418484	n:1290000
KS ci ratio: 1.556448e-01	ci left: 4.532193e-04	ci right 5.304475e-04	k: 633	n:1290000
PDYN   1290000 perm   818 sec   (1576 perm/sec)   p_kst 4.906977e-04   p_cons 3.244062e-01   p_joint 8.868217e-04

Joint ci ratio: 1.153928e-01	ci left: 8.357352e-04	ci right 9.388170e-04	k: 1152	n:1300000
Cons ci ratio: 4.961601e-03	ci left: 3.235914e-01	ci right 3.252017e-01	k: 421715	n:1300000
KS ci ratio: 1.551561e-01	ci left: 4.526903e-04	ci right 5.295636e-04	k: 637	n:1300000
PDYN   1300000 perm   829 sec   (1568 perm/sec)   p_kst 4.900000e-04   p_cons 3.243962e-01   p_joint 8.861538e-04

Joint ci ratio: 1.149450e-01	ci left: 8.360279e-04	ci right 9.387185e-04	k: 1161	n:1310000
Cons ci ratio: 4.942808e-03	ci left: 3.235785e-01	ci right 3.251826e-01	k: 424938	n:1310000
KS ci ratio: 1.545517e-01	ci left: 4.529035e-04	ci right 5.294857e-04	k: 642	n:1310000
PDYN   1310000 perm   841 sec   (1559 perm/sec)   p_kst 4.900763e-04   p_cons 3.243802e-01   p_joint 8.862595e-04

Joint ci ratio: 1.150942e-01	ci left: 8.274868e-04	ci right 9.292692e-04	k: 1158	n:1320000
Cons ci ratio: 4.923052e-03	ci left: 3.236703e-01	ci right 3.252684e-01	k: 428299	n:1320000
KS ci ratio: 1.543121e-01	ci left: 4.509290e-04	ci right 5.270482e-04	k: 644	n:1320000
PDYN   1320000 perm   851 sec   (1550 perm/sec)   p_kst 4.878788e-04   p_cons 3.244689e-01   p_joint 8.772727e-04

Joint ci ratio: 1.145028e-01	ci left: 8.300286e-04	ci right 9.315636e-04	k: 1170	n:1330000
Cons ci ratio: 4.904372e-03	ci left: 3.236855e-01	ci right 3.252776e-01	k: 431560	n:1330000
KS ci ratio: 1.537174e-01	ci left: 4.511531e-04	ci right 5.269895e-04	k: 649	n:1330000
PDYN   1330000 perm   862 sec   (1542 perm/sec)   p_kst 4.879699e-04   p_cons 3.244812e-01   p_joint 8.796992e-04

Joint ci ratio: 1.144055e-01	ci left: 8.252841e-04	ci right 9.261471e-04	k: 1172	n:1340000
Cons ci ratio: 4.885430e-03	ci left: 3.237431e-01	ci right 3.253293e-01	k: 434878	n:1340000
KS ci ratio: 1.533640e-01	ci left: 4.499390e-04	ci right 5.253816e-04	k: 652	n:1340000
PDYN   1340000 perm   874 sec   (1534 perm/sec)   p_kst 4.865672e-04   p_cons 3.245358e-01   p_joint 8.746269e-04

Joint ci ratio: 1.141141e-01	ci left: 8.234882e-04	ci right 9.238582e-04	k: 1178	n:1350000
Cons ci ratio: 4.867724e-03	ci left: 3.237080e-01	ci right 3.252883e-01	k: 438072	n:1350000
KS ci ratio: 1.530130e-01	ci left: 4.487432e-04	ci right 5.237972e-04	k: 655	n:1350000
PDYN   1350000 perm   885 sec   (1526 perm/sec)   p_kst 4.851852e-04   p_cons 3.244978e-01   p_joint 8.725926e-04

Joint ci ratio: 1.135854e-01	ci left: 8.252911e-04	ci right 9.253835e-04	k: 1189	n:1360000
Cons ci ratio: 4.849885e-03	ci left: 3.237029e-01	ci right 3.252773e-01	k: 441306	n:1360000
KS ci ratio: 1.519739e-01	ci left: 4.518088e-04	ci right 5.268157e-04	k: 664	n:1360000
PDYN   1360000 perm   896 sec   (1518 perm/sec)   p_kst 4.882353e-04   p_cons 3.244897e-01   p_joint 8.742647e-04

Joint ci ratio: 1.162052e-01	ci left: 7.816916e-04	ci right 8.788328e-04	k: 1136	n:1370000
Cons ci ratio: 4.831781e-03	ci left: 3.237394e-01	ci right 3.253081e-01	k: 444597	n:1370000
KS ci ratio: 1.515189e-01	ci left: 4.513198e-04	ci right 5.260008e-04	k: 668	n:1370000
PDYN   1370000 perm   908 sec   (1509 perm/sec)   p_kst 4.875912e-04   p_cons 3.245234e-01   p_joint 8.291971e-04

Joint ci ratio: 1.159506e-01	ci left: 7.795451e-04	ci right 8.761929e-04	k: 1141	n:1380000
Cons ci ratio: 4.813759e-03	ci left: 3.237862e-01	ci right 3.253493e-01	k: 447903	n:1380000
KS ci ratio: 1.509558e-01	ci left: 4.515354e-04	ci right 5.259494e-04	k: 673	n:1380000
PDYN   1380000 perm   919 sec   (1501 perm/sec)   p_kst 4.876812e-04   p_cons 3.245674e-01   p_joint 8.268116e-04

Joint ci ratio: 1.154462e-01	ci left: 7.809229e-04	ci right 8.772916e-04	k: 1151	n:1390000
Cons ci ratio: 4.796315e-03	ci left: 3.237979e-01	ci right 3.253554e-01	k: 451161	n:1390000
KS ci ratio: 1.503990e-01	ci left: 4.517485e-04	ci right 5.258982e-04	k: 678	n:1390000
PDYN   1390000 perm   931 sec   (1493 perm/sec)   p_kst 4.877698e-04   p_cons 3.245763e-01   p_joint 8.280576e-04

Joint ci ratio: 1.153464e-01	ci left: 7.767321e-04	ci right 8.724952e-04	k: 1153	n:1400000
Cons ci ratio: 4.779644e-03	ci left: 3.237559e-01	ci right 3.253077e-01	k: 454344	n:1400000
KS ci ratio: 1.499580e-01	ci left: 4.512715e-04	ci right 5.251062e-04	k: 682	n:1400000
PDYN   1400000 perm   942 sec   (1486 perm/sec)   p_kst 4.871429e-04   p_cons 3.245314e-01   p_joint 8.235714e-04

Joint ci ratio: 1.170336e-01	ci left: 7.484987e-04	ci right 8.422239e-04	k: 1120	n:1410000
Cons ci ratio: 4.763091e-03	ci left: 3.237194e-01	ci right 3.252657e-01	k: 457534	n:1410000
KS ci ratio: 1.491953e-01	ci left: 4.528497e-04	ci right 5.265323e-04	k: 689	n:1410000
PDYN   1410000 perm   954 sec   (1478 perm/sec)   p_kst 4.886525e-04   p_cons 3.244922e-01   p_joint 7.943262e-04

Joint ci ratio: 1.166182e-01	ci left: 7.486967e-04	ci right 8.420911e-04	k: 1128	n:1420000
Cons ci ratio: 4.746411e-03	ci left: 3.237109e-01	ci right 3.252517e-01	k: 460763	n:1420000
KS ci ratio: 1.485507e-01	ci left: 4.537286e-04	ci right 5.272069e-04	k: 695	n:1420000
PDYN   1420000 perm   965 sec   (1471 perm/sec)   p_kst 4.894366e-04   p_cons 3.244810e-01   p_joint 7.943662e-04

Joint ci ratio: 1.170865e-01	ci left: 7.373511e-04	ci right 8.297251e-04	k: 1119	n:1430000
Cons ci ratio: 4.729181e-03	ci left: 3.237697e-01	ci right 3.253052e-01	k: 464088	n:1430000
KS ci ratio: 1.478092e-01	ci left: 4.552693e-04	ci right 5.285966e-04	k: 702	n:1430000
PDYN   1430000 perm   977 sec   (1464 perm/sec)   p_kst 4.909091e-04   p_cons 3.245371e-01   p_joint 7.825175e-04

Joint ci ratio: 1.179329e-01	ci left: 7.214457e-04	ci right 8.125260e-04	k: 1103	n:1440000
Cons ci ratio: 4.713339e-03	ci left: 3.237159e-01	ci right 3.252459e-01	k: 467252	n:1440000
KS ci ratio: 1.470787e-01	ci left: 4.567895e-04	ci right 5.299660e-04	k: 709	n:1440000
PDYN   1440000 perm   989 sec   (1456 perm/sec)   p_kst 4.923611e-04   p_cons 3.244806e-01   p_joint 7.659722e-04

Joint ci ratio: 1.174550e-01	ci left: 7.224944e-04	ci right 8.133119e-04	k: 1112	n:1450000
Cons ci ratio: 4.696858e-03	ci left: 3.237373e-01	ci right 3.252621e-01	k: 470524	n:1450000
KS ci ratio: 1.464611e-01	ci left: 4.576252e-04	ci right 5.306009e-04	k: 715	n:1450000
PDYN   1450000 perm   1001 sec   (1449 perm/sec)   p_kst 4.931034e-04   p_cons 3.244993e-01   p_joint 7.668966e-04

Joint ci ratio: 1.185802e-01	ci left: 7.035864e-04	ci right 7.929337e-04	k: 1091	n:1460000
Cons ci ratio: 4.680672e-03	ci left: 3.237467e-01	ci right 3.252663e-01	k: 473779	n:1460000
KS ci ratio: 1.457502e-01	ci left: 4.591101e-04	ci right 5.319363e-04	k: 722	n:1460000
PDYN   1460000 perm   1012 sec   (1442 perm/sec)   p_kst 4.945205e-04   p_cons 3.245062e-01   p_joint 7.472603e-04

Joint ci ratio: 1.184178e-01	ci left: 7.007804e-04	ci right 7.896410e-04	k: 1094	n:1470000
Cons ci ratio: 4.665311e-03	ci left: 3.236942e-01	ci right 3.252085e-01	k: 476943	n:1470000
KS ci ratio: 1.450496e-01	ci left: 4.605756e-04	ci right 5.332526e-04	k: 729	n:1470000
PDYN   1470000 perm   1024 sec   (1435 perm/sec)   p_kst 4.959184e-04   p_cons 3.244510e-01   p_joint 7.442177e-04

Joint ci ratio: 1.179341e-01	ci left: 7.019468e-04	ci right 7.905663e-04	k: 1103	n:1480000
Cons ci ratio: 4.649240e-03	ci left: 3.237234e-01	ci right 3.252327e-01	k: 480227	n:1480000
KS ci ratio: 1.445554e-01	ci left: 4.607196e-04	ci right 5.331503e-04	k: 734	n:1480000
PDYN   1480000 perm   1036 sec   (1428 perm/sec)   p_kst 4.959459e-04   p_cons 3.244777e-01   p_joint 7.452703e-04

Joint ci ratio: 1.181488e-01	ci left: 6.946303e-04	ci right 7.824969e-04	k: 1099	n:1490000
Cons ci ratio: 4.633164e-03	ci left: 3.237684e-01	ci right 3.252726e-01	k: 483535	n:1490000
KS ci ratio: 1.443593e-01	ci left: 4.589212e-04	ci right 5.309629e-04	k: 736	n:1490000
PDYN   1490000 perm   1048 sec   (1421 perm/sec)   p_kst 4.939597e-04   p_cons 3.245201e-01   p_joint 7.375839e-04

Joint ci ratio: 1.175094e-01	ci left: 6.977637e-04	ci right 7.855158e-04	k: 1111	n:1500000
Cons ci ratio: 4.617604e-03	ci left: 3.237794e-01	ci right 3.252786e-01	k: 486793	n:1500000
KS ci ratio: 1.436785e-01	ci left: 4.603603e-04	ci right 5.322578e-04	k: 743	n:1500000
PDYN   1500000 perm   1061 sec   (1414 perm/sec)   p_kst 4.953333e-04   p_cons 3.245287e-01   p_joint 7.406667e-04

Joint ci ratio: 1.172987e-01	ci left: 6.957139e-04	ci right 7.830406e-04	k: 1115	n:1510000
Cons ci ratio: 4.601901e-03	ci left: 3.238188e-01	ci right 3.253130e-01	k: 490094	n:1510000
KS ci ratio: 1.435822e-01	ci left: 4.579500e-04	ci right 5.294190e-04	k: 744	n:1510000
PDYN   1510000 perm   1073 sec   (1407 perm/sec)   p_kst 4.927152e-04   p_cons 3.245656e-01   p_joint 7.384106e-04

Joint ci ratio: 1.168285e-01	ci left: 6.968845e-04	ci right 7.839833e-04	k: 1124	n:1520000
Cons ci ratio: 4.586454e-03	ci left: 3.238484e-01	ci right 3.253378e-01	k: 493381	n:1520000
KS ci ratio: 1.431983e-01	ci left: 4.574743e-04	ci right 5.286619e-04	k: 748	n:1520000
PDYN   1520000 perm   1085 sec   (1401 perm/sec)   p_kst 4.921053e-04   p_cons 3.245928e-01   p_joint 7.394737e-04

Joint ci ratio: 1.165183e-01	ci left: 6.961368e-04	ci right 7.828952e-04	k: 1130	n:1530000
Cons ci ratio: 4.571509e-03	ci left: 3.238444e-01	ci right 3.253288e-01	k: 496617	n:1530000
KS ci ratio: 1.427228e-01	ci left: 4.576354e-04	ci right 5.285914e-04	k: 753	n:1530000
PDYN   1530000 perm   1098 sec   (1394 perm/sec)   p_kst 4.921569e-04   p_cons 3.245863e-01   p_joint 7.385621e-04

Joint ci ratio: 1.160065e-01	ci left: 6.979212e-04	ci right 7.844937e-04	k: 1140	n:1540000
Cons ci ratio: 4.556324e-03	ci left: 3.238774e-01	ci right 3.253571e-01	k: 499910	n:1540000
KS ci ratio: 1.420647e-01	ci left: 4.590473e-04	ci right 5.298662e-04	k: 760	n:1540000
PDYN   1540000 perm   1110 sec   (1387 perm/sec)   p_kst 4.935065e-04   p_cons 3.246169e-01   p_joint 7.402597e-04

Joint ci ratio: 1.157532e-01	ci left: 6.965507e-04	ci right 7.827517e-04	k: 1145	n:1550000
Cons ci ratio: 4.541203e-03	ci left: 3.239183e-01	ci right 3.253933e-01	k: 503216	n:1550000
KS ci ratio: 1.418785e-01	ci left: 4.573301e-04	ci right 5.277839e-04	k: 762	n:1550000
PDYN   1550000 perm   1123 sec   (1381 perm/sec)   p_kst 4.916129e-04   p_cons 3.246555e-01   p_joint 7.387097e-04

Joint ci ratio: 1.152015e-01	ci left: 6.989333e-04	ci right 7.849889e-04	k: 1156	n:1560000
Cons ci ratio: 4.526840e-03	ci left: 3.238998e-01	ci right 3.253700e-01	k: 506430	n:1560000
KS ci ratio: 1.410489e-01	ci left: 4.599636e-04	ci right 5.303739e-04	k: 771	n:1560000
PDYN   1560000 perm   1135 sec   (1375 perm/sec)   p_kst 4.942308e-04   p_cons 3.246346e-01   p_joint 7.410256e-04

Joint ci ratio: 1.152516e-01	ci left: 6.938628e-04	ci right 7.793338e-04	k: 1155	n:1570000
Cons ci ratio: 4.511891e-03	ci left: 3.239516e-01	ci right 3.254172e-01	k: 509754	n:1570000
KS ci ratio: 1.406850e-01	ci left: 4.594919e-04	ci right 5.296332e-04	k: 775	n:1570000
PDYN   1570000 perm   1148 sec   (1367 perm/sec)   p_kst 4.936306e-04   p_cons 3.246841e-01   p_joint 7.356688e-04

Joint ci ratio: 1.147562e-01	ci left: 6.956184e-04	ci right 7.809124e-04	k: 1165	n:1580000
Cons ci ratio: 4.497758e-03	ci left: 3.239376e-01	ci right 3.253985e-01	k: 512975	n:1580000
KS ci ratio: 1.401442e-01	ci left: 4.602478e-04	ci right 5.302119e-04	k: 781	n:1580000
PDYN   1580000 perm   1161 sec   (1361 perm/sec)   p_kst 4.943038e-04   p_cons 3.246677e-01   p_joint 7.373418e-04

Joint ci ratio: 1.144133e-01	ci left: 6.955198e-04	ci right 7.805296e-04	k: 1172	n:1590000
Cons ci ratio: 4.482960e-03	ci left: 3.240017e-01	ci right 3.254581e-01	k: 516320	n:1590000
KS ci ratio: 1.396983e-01	ci left: 4.603877e-04	ci right 5.301319e-04	k: 786	n:1590000
PDYN   1590000 perm   1174 sec   (1355 perm/sec)   p_kst 4.943396e-04   p_cons 3.247296e-01   p_joint 7.371069e-04

Joint ci ratio: 1.139769e-01	ci left: 6.966371e-04	ci right 7.814369e-04	k: 1181	n:1600000
Cons ci ratio: 4.468561e-03	ci left: 3.240400e-01	ci right 3.254919e-01	k: 519625	n:1600000
KS ci ratio: 1.390810e-01	ci left: 4.617327e-04	ci right 5.313460e-04	k: 793	n:1600000
PDYN   1600000 perm   1187 sec   (1348 perm/sec)   p_kst 4.956250e-04   p_cons 3.247656e-01   p_joint 7.381250e-04

Joint ci ratio: 1.136409e-01	ci left: 6.965342e-04	ci right 7.810548e-04	k: 1188	n:1610000
Cons ci ratio: 4.455076e-03	ci left: 3.240015e-01	ci right 3.254488e-01	k: 522807	n:1610000
KS ci ratio: 1.387321e-01	ci left: 4.612630e-04	ci right 5.306165e-04	k: 797	n:1610000
PDYN   1610000 perm   1200 sec   (1342 perm/sec)   p_kst 4.950311e-04   p_cons 3.247248e-01   p_joint 7.378882e-04

Joint ci ratio: 1.137369e-01	ci left: 6.910351e-04	ci right 7.749639e-04	k: 1186	n:1620000
Cons ci ratio: 4.441244e-03	ci left: 3.240098e-01	ci right 3.254526e-01	k: 526064	n:1620000
KS ci ratio: 1.383857e-01	ci left: 4.607992e-04	ci right 5.298958e-04	k: 801	n:1620000
PDYN   1620000 perm   1213 sec   (1336 perm/sec)   p_kst 4.944444e-04   p_cons 3.247309e-01   p_joint 7.320988e-04

Joint ci ratio: 1.134506e-01	ci left: 6.903720e-04	ci right 7.739951e-04	k: 1192	n:1630000
Cons ci ratio: 4.427552e-03	ci left: 3.240167e-01	ci right 3.254551e-01	k: 529319	n:1630000
KS ci ratio: 1.380419e-01	ci left: 4.603413e-04	ci right 5.291837e-04	k: 805	n:1630000
PDYN   1630000 perm   1226 sec   (1330 perm/sec)   p_kst 4.938650e-04   p_cons 3.247356e-01   p_joint 7.312883e-04

Joint ci ratio: 1.131664e-01	ci left: 6.897172e-04	ci right 7.730378e-04	k: 1198	n:1640000
Cons ci ratio: 4.413642e-03	ci left: 3.240577e-01	ci right 3.254917e-01	k: 532630	n:1640000
KS ci ratio: 1.376157e-01	ci left: 4.604780e-04	ci right 5.291108e-04	k: 810	n:1640000
PDYN   1640000 perm   1239 sec   (1323 perm/sec)   p_kst 4.939024e-04   p_cons 3.247744e-01   p_joint 7.304878e-04

Joint ci ratio: 1.128375e-01	ci left: 6.896596e-04	ci right 7.727150e-04	k: 1205	n:1650000
Cons ci ratio: 4.400799e-03	ci left: 3.240049e-01	ci right 3.254345e-01	k: 535787	n:1650000
KS ci ratio: 1.371094e-01	ci left: 4.611987e-04	ci right 5.296653e-04	k: 816	n:1650000
PDYN   1650000 perm   1253 sec   (1317 perm/sec)   p_kst 4.945455e-04   p_cons 3.247194e-01   p_joint 7.303030e-04

Joint ci ratio: 1.134513e-01	ci left: 6.778951e-04	ci right 7.600075e-04	k: 1192	n:1660000
Cons ci ratio: 4.387729e-03	ci left: 3.239865e-01	ci right 3.254117e-01	k: 539000	n:1660000
KS ci ratio: 1.367751e-01	ci left: 4.607474e-04	ci right 5.289667e-04	k: 820	n:1660000
PDYN   1660000 perm   1266 sec   (1311 perm/sec)   p_kst 4.939759e-04   p_cons 3.246988e-01   p_joint 7.180723e-04

Joint ci ratio: 1.131200e-01	ci left: 6.779087e-04	ci right 7.597669e-04	k: 1199	n:1670000
Cons ci ratio: 4.375081e-03	ci left: 3.239377e-01	ci right 3.253587e-01	k: 542162	n:1670000
KS ci ratio: 1.360313e-01	ci left: 4.631938e-04	ci right 5.313722e-04	k: 829	n:1670000
PDYN   1670000 perm   1280 sec   (1305 perm/sec)   p_kst 4.964072e-04   p_cons 3.246479e-01   p_joint 7.179641e-04

Joint ci ratio: 1.142695e-01	ci left: 6.599937e-04	ci right 7.405531e-04	k: 1175	n:1680000
Cons ci ratio: 4.362286e-03	ci left: 3.239152e-01	ci right 3.253319e-01	k: 545367	n:1680000
KS ci ratio: 1.356234e-01	ci left: 4.633118e-04	ci right 5.312865e-04	k: 834	n:1680000
PDYN   1680000 perm   1294 sec   (1299 perm/sec)   p_kst 4.964286e-04   p_cons 3.246232e-01   p_joint 6.994048e-04

Joint ci ratio: 1.139791e-01	ci left: 6.595374e-04	ci right 7.398228e-04	k: 1181	n:1690000
Cons ci ratio: 4.349321e-03	ci left: 3.239213e-01	ci right 3.253338e-01	k: 548620	n:1690000
KS ci ratio: 1.354614e-01	ci left: 4.617136e-04	ci right 5.293664e-04	k: 836	n:1690000
PDYN   1690000 perm   1307 sec   (1293 perm/sec)   p_kst 4.946746e-04   p_cons 3.246272e-01   p_joint 6.988166e-04

Joint ci ratio: 1.143186e-01	ci left: 6.516575e-04	ci right 7.312359e-04	k: 1174	n:1700000
Cons ci ratio: 4.336546e-03	ci left: 3.239197e-01	ci right 3.253280e-01	k: 551860	n:1700000
KS ci ratio: 1.348185e-01	ci left: 4.635444e-04	ci right 5.311173e-04	k: 844	n:1700000
PDYN   1700000 perm   1321 sec   (1287 perm/sec)   p_kst 4.964706e-04   p_cons 3.246235e-01   p_joint 6.905882e-04

Joint ci ratio: 1.139314e-01	ci left: 6.523915e-04	ci right 7.317715e-04	k: 1182	n:1710000
Cons ci ratio: 4.323722e-03	ci left: 3.239345e-01	ci right 3.253387e-01	k: 555128	n:1710000
KS ci ratio: 1.345799e-01	ci left: 4.625289e-04	ci right 5.298249e-04	k: 847	n:1710000
PDYN   1710000 perm   1335 sec   (1281 perm/sec)   p_kst 4.953216e-04   p_cons 3.246363e-01   p_joint 6.912281e-04

Joint ci ratio: 1.136914e-01	ci left: 6.514227e-04	ci right 7.305067e-04	k: 1187	n:1720000
Cons ci ratio: 4.310908e-03	ci left: 3.239595e-01	ci right 3.253597e-01	k: 558414	n:1720000
KS ci ratio: 1.343426e-01	ci left: 4.615252e-04	ci right 5.285473e-04	k: 850	n:1720000
PDYN   1720000 perm   1348 sec   (1276 perm/sec)   p_kst 4.941860e-04   p_cons 3.246593e-01   p_joint 6.901163e-04

Joint ci ratio: 1.134530e-01	ci left: 6.504653e-04	ci right 7.292564e-04	k: 1192	n:1730000
Cons ci ratio: 4.298655e-03	ci left: 3.239387e-01	ci right 3.253347e-01	k: 561621	n:1730000
KS ci ratio: 1.340280e-01	ci left: 4.610920e-04	ci right 5.278819e-04	k: 854	n:1730000
PDYN   1730000 perm   1362 sec   (1270 perm/sec)   p_kst 4.936416e-04   p_cons 3.246364e-01   p_joint 6.890173e-04

Joint ci ratio: 1.147109e-01	ci left: 6.322105e-04	ci right 7.096969e-04	k: 1166	n:1740000
Cons ci ratio: 4.286439e-03	ci left: 3.239250e-01	ci right 3.253170e-01	k: 564840	n:1740000
KS ci ratio: 1.336378e-01	ci left: 4.612194e-04	ci right 5.278178e-04	k: 859	n:1740000
PDYN   1740000 perm   1376 sec   (1265 perm/sec)   p_kst 4.936782e-04   p_cons 3.246207e-01   p_joint 6.701149e-04

Joint ci ratio: 1.143684e-01	ci left: 6.324833e-04	ci right 7.097561e-04	k: 1173	n:1750000
Cons ci ratio: 4.274092e-03	ci left: 3.239354e-01	ci right 3.253235e-01	k: 568101	n:1750000
KS ci ratio: 1.333281e-01	ci left: 4.607932e-04	ci right 5.271637e-04	k: 863	n:1750000
PDYN   1750000 perm   1390 sec   (1259 perm/sec)   p_kst 4.931429e-04   p_cons 3.246291e-01   p_joint 6.702857e-04

Joint ci ratio: 1.138843e-01	ci left: 6.344093e-04	ci right 7.115673e-04	k: 1183	n:1760000
Cons ci ratio: 4.261559e-03	ci left: 3.239758e-01	ci right 3.253600e-01	k: 571415	n:1760000
KS ci ratio: 1.330973e-01	ci left: 4.598228e-04	ci right 5.259298e-04	k: 866	n:1760000
PDYN   1760000 perm   1404 sec   (1254 perm/sec)   p_kst 4.920455e-04   p_cons 3.246676e-01   p_joint 6.721591e-04

Joint ci ratio: 1.135492e-01	ci left: 6.346674e-04	ci right 7.116144e-04	k: 1190	n:1770000
Cons ci ratio: 4.249315e-03	ci left: 3.239972e-01	ci right 3.253774e-01	k: 574696	n:1770000
KS ci ratio: 1.325632e-01	ci left: 4.610483e-04	ci right 5.270446e-04	k: 873	n:1770000
PDYN   1770000 perm   1418 sec   (1249 perm/sec)   p_kst 4.932203e-04   p_cons 3.246870e-01   p_joint 6.723164e-04

Joint ci ratio: 1.136449e-01	ci left: 6.300101e-04	ci right 7.064611e-04	k: 1188	n:1780000
Cons ci ratio: 4.237329e-03	ci left: 3.240026e-01	ci right 3.253789e-01	k: 577949	n:1780000
KS ci ratio: 1.322609e-01	ci left: 4.606309e-04	ci right 5.264052e-04	k: 877	n:1780000
PDYN   1780000 perm   1432 sec   (1243 perm/sec)   p_kst 4.926966e-04   p_cons 3.246904e-01   p_joint 6.674157e-04

Joint ci ratio: 1.133593e-01	ci left: 6.297473e-04	ci right 7.059615e-04	k: 1194	n:1790000
Cons ci ratio: 4.225567e-03	ci left: 3.239950e-01	ci right 3.253675e-01	k: 581179	n:1790000
KS ci ratio: 1.317367e-01	ci left: 4.618391e-04	ci right 5.275041e-04	k: 884	n:1790000
PDYN   1790000 perm   1446 sec   (1238 perm/sec)   p_kst 4.938547e-04   p_cons 3.246810e-01   p_joint 6.670391e-04

Joint ci ratio: 1.128878e-01	ci left: 6.316471e-04	ci right 7.077521e-04	k: 1204	n:1800000
Cons ci ratio: 4.214085e-03	ci left: 3.239687e-01	ci right 3.253374e-01	k: 584375	n:1800000
KS ci ratio: 1.312924e-01	ci left: 4.624970e-04	ci right 5.280164e-04	k: 890	n:1800000
PDYN   1800000 perm   1460 sec   (1233 perm/sec)   p_kst 4.944444e-04   p_cons 3.246528e-01   p_joint 6.688889e-04

Joint ci ratio: 1.126078e-01	ci left: 6.313787e-04	ci right 7.072503e-04	k: 1210	n:1810000
Cons ci ratio: 4.202414e-03	ci left: 3.239720e-01	ci right 3.253369e-01	k: 587624	n:1810000
KS ci ratio: 1.308525e-01	ci left: 4.631480e-04	ci right 5.285227e-04	k: 896	n:1810000
PDYN   1810000 perm   1474 sec   (1228 perm/sec)   p_kst 4.950276e-04   p_cons 3.246541e-01   p_joint 6.685083e-04

Joint ci ratio: 1.120080e-01	ci left: 6.348519e-04	ci right 7.107076e-04	k: 1223	n:1820000
Cons ci ratio: 4.190788e-03	ci left: 3.239807e-01	ci right 3.253418e-01	k: 590883	n:1820000
KS ci ratio: 1.303448e-01	ci left: 4.643237e-04	ci right 5.295905e-04	k: 903	n:1820000
PDYN   1820000 perm   1489 sec   (1222 perm/sec)   p_kst 4.961538e-04   p_cons 3.246610e-01   p_joint 6.719780e-04

Joint ci ratio: 1.117800e-01	ci left: 6.340385e-04	ci right 7.096327e-04	k: 1228	n:1830000
Cons ci ratio: 4.178997e-03	ci left: 3.240166e-01	ci right 3.253741e-01	k: 594192	n:1830000
KS ci ratio: 1.299859e-01	ci left: 4.644297e-04	ci right 5.295177e-04	k: 908	n:1830000
PDYN   1830000 perm   1503 sec   (1217 perm/sec)   p_kst 4.961749e-04   p_cons 3.246951e-01   p_joint 6.710383e-04

Joint ci ratio: 1.117802e-01	ci left: 6.305926e-04	ci right 7.057760e-04	k: 1228	n:1840000
Cons ci ratio: 4.167605e-03	ci left: 3.240207e-01	ci right 3.253744e-01	k: 597443	n:1840000
KS ci ratio: 1.295589e-01	ci left: 4.650607e-04	ci right 5.300066e-04	k: 914	n:1840000
PDYN   1840000 perm   1518 sec   (1212 perm/sec)   p_kst 4.967391e-04   p_cons 3.246973e-01   p_joint 6.673913e-04

Joint ci ratio: 1.114632e-01	ci left: 6.308621e-04	ci right 7.058504e-04	k: 1235	n:1850000
Cons ci ratio: 4.155778e-03	ci left: 3.240803e-01	ci right 3.254305e-01	k: 600797	n:1850000
KS ci ratio: 1.292767e-01	ci left: 4.646390e-04	ci right 5.293738e-04	k: 918	n:1850000
PDYN   1850000 perm   1533 sec   (1207 perm/sec)   p_kst 4.962162e-04   p_cons 3.247551e-01   p_joint 6.675676e-04

Joint ci ratio: 1.112385e-01	ci left: 6.300837e-04	ci right 7.048185e-04	k: 1240	n:1860000
Cons ci ratio: 4.144132e-03	ci left: 3.241308e-01	ci right 3.254773e-01	k: 604135	n:1860000
KS ci ratio: 1.288567e-01	ci left: 4.652626e-04	ci right 5.298576e-04	k: 924	n:1860000
PDYN   1860000 perm   1547 sec   (1202 perm/sec)   p_kst 4.967742e-04   p_cons 3.248038e-01   p_joint 6.666667e-04

Joint ci ratio: 1.127956e-01	ci left: 6.090415e-04	ci right 6.823589e-04	k: 1206	n:1870000
Cons ci ratio: 4.133172e-03	ci left: 3.241181e-01	ci right 3.254610e-01	k: 607356	n:1870000
KS ci ratio: 1.284408e-01	ci left: 4.658798e-04	ci right 5.303359e-04	k: 930	n:1870000
PDYN   1870000 perm   1562 sec   (1197 perm/sec)   p_kst 4.973262e-04   p_cons 3.247893e-01   p_joint 6.449198e-04

Joint ci ratio: 1.125163e-01	ci left: 6.089034e-04	ci right 6.820107e-04	k: 1212	n:1880000
Cons ci ratio: 4.121930e-03	ci left: 3.241449e-01	ci right 3.254843e-01	k: 610651	n:1880000
KS ci ratio: 1.280289e-01	ci left: 4.664909e-04	ci right 5.308087e-04	k: 936	n:1880000
PDYN   1880000 perm   1577 sec   (1192 perm/sec)   p_kst 4.978723e-04   p_cons 3.248144e-01   p_joint 6.446809e-04

Joint ci ratio: 1.124701e-01	ci left: 6.061959e-04	ci right 6.789462e-04	k: 1213	n:1890000
Cons ci ratio: 4.110898e-03	ci left: 3.241588e-01	ci right 3.254946e-01	k: 613922	n:1890000
KS ci ratio: 1.277565e-01	ci left: 4.660714e-04	ci right 5.301843e-04	k: 940	n:1890000
PDYN   1890000 perm   1592 sec   (1187 perm/sec)   p_kst 4.973545e-04   p_cons 3.248265e-01   p_joint 6.417989e-04

Joint ci ratio: 1.123777e-01	ci left: 6.040284e-04	ci right 6.764551e-04	k: 1215	n:1900000
Cons ci ratio: 4.100184e-03	ci left: 3.241478e-01	ci right 3.254801e-01	k: 617146	n:1900000
KS ci ratio: 1.276210e-01	ci left: 4.646373e-04	ci right 5.284801e-04	k: 942	n:1900000
PDYN   1900000 perm   1607 sec   (1183 perm/sec)   p_kst 4.957895e-04   p_cons 3.248137e-01   p_joint 6.394737e-04

Joint ci ratio: 1.121934e-01	ci left: 6.029013e-04	ci right 6.750665e-04	k: 1219	n:1910000
Cons ci ratio: 4.089238e-03	ci left: 3.241709e-01	ci right 3.254998e-01	k: 620435	n:1910000
KS ci ratio: 1.274860e-01	ci left: 4.632184e-04	ci right 5.267938e-04	k: 944	n:1910000
PDYN   1910000 perm   1622 sec   (1178 perm/sec)   p_kst 4.942408e-04   p_cons 3.248351e-01   p_joint 6.382199e-04

Joint ci ratio: 1.119185e-01	ci left: 6.027986e-04	ci right 6.747631e-04	k: 1225	n:1920000
Cons ci ratio: 4.078799e-03	ci left: 3.241485e-01	ci right 3.254739e-01	k: 623637	n:1920000
KS ci ratio: 1.272171e-01	ci left: 4.628227e-04	ci right 5.261997e-04	k: 948	n:1920000
PDYN   1920000 perm   1636 sec   (1173 perm/sec)   p_kst 4.937500e-04   p_cons 3.248109e-01   p_joint 6.380208e-04

Joint ci ratio: 1.125637e-01	ci left: 5.926249e-04	ci right 6.638097e-04	k: 1211	n:1930000
Cons ci ratio: 4.067907e-03	ci left: 3.241839e-01	ci right 3.255058e-01	k: 626950	n:1930000
KS ci ratio: 1.270166e-01	ci left: 4.619297e-04	ci right 5.250771e-04	k: 951	n:1930000
PDYN   1930000 perm   1651 sec   (1169 perm/sec)   p_kst 4.927461e-04   p_cons 3.248446e-01   p_joint 6.274611e-04

Joint ci ratio: 1.123784e-01	ci left: 5.915740e-04	ci right 6.625078e-04	k: 1215	n:1940000
Cons ci ratio: 4.057058e-03	ci left: 3.242235e-01	ci right 3.255420e-01	k: 630272	n:1940000
KS ci ratio: 1.267506e-01	ci left: 4.615450e-04	ci right 5.244978e-04	k: 955	n:1940000
PDYN   1940000 perm   1666 sec   (1164 perm/sec)   p_kst 4.922680e-04   p_cons 3.248825e-01   p_joint 6.262887e-04

Joint ci ratio: 1.118734e-01	ci left: 5.940231e-04	ci right 6.649095e-04	k: 1226	n:1950000
Cons ci ratio: 4.046944e-03	ci left: 3.241924e-01	ci right 3.255076e-01	k: 633457	n:1950000
KS ci ratio: 1.264863e-01	ci left: 4.611644e-04	ci right 5.239243e-04	k: 959	n:1950000
PDYN   1950000 perm   1682 sec   (1160 perm/sec)   p_kst 4.917949e-04   p_cons 3.248497e-01   p_joint 6.287179e-04

Joint ci ratio: 1.117370e-01	ci left: 5.924802e-04	ci right 6.630905e-04	k: 1229	n:1960000
Cons ci ratio: 4.036694e-03	ci left: 3.241847e-01	ci right 3.254964e-01	k: 636687	n:1960000
KS ci ratio: 1.263548e-01	ci left: 4.597996e-04	ci right 5.223039e-04	k: 961	n:1960000
PDYN   1960000 perm   1697 sec   (1155 perm/sec)   p_kst 4.903061e-04   p_cons 3.248403e-01   p_joint 6.270408e-04

Joint ci ratio: 1.116464e-01	ci left: 5.904595e-04	ci right 6.607682e-04	k: 1231	n:1970000
Cons ci ratio: 4.026111e-03	ci left: 3.242217e-01	ci right 3.255301e-01	k: 640005	n:1970000
KS ci ratio: 1.260930e-01	ci left: 4.594320e-04	ci right 5.217472e-04	k: 965	n:1970000
PDYN   1970000 perm   1712 sec   (1150 perm/sec)   p_kst 4.898477e-04   p_cons 3.248756e-01   p_joint 6.248731e-04

Joint ci ratio: 1.120569e-01	ci left: 5.830590e-04	ci right 6.527585e-04	k: 1222	n:1980000
Cons ci ratio: 4.016152e-03	ci left: 3.241992e-01	ci right 3.255043e-01	k: 643206	n:1980000
KS ci ratio: 1.260931e-01	ci left: 4.571116e-04	ci right 5.191121e-04	k: 965	n:1980000
PDYN   1980000 perm   1728 sec   (1146 perm/sec)   p_kst 4.873737e-04   p_cons 3.248515e-01   p_joint 6.171717e-04

Joint ci ratio: 1.118286e-01	ci left: 5.825712e-04	ci right 6.520612e-04	k: 1227	n:1990000
Cons ci ratio: 4.005849e-03	ci left: 3.242227e-01	ci right 3.255246e-01	k: 646498	n:1990000
KS ci ratio: 1.256387e-01	ci left: 4.582214e-04	ci right 5.201318e-04	k: 972	n:1990000
PDYN   1990000 perm   1743 sec   (1141 perm/sec)   p_kst 4.884422e-04   p_cons 3.248734e-01   p_joint 6.165829e-04

Joint ci ratio: 1.040257e-01	ci left: 6.725854e-04	ci right 7.468727e-04	k: 1418	n:2000000
Cons ci ratio: 3.996080e-03	ci left: 3.241960e-01	ci right 3.254945e-01	k: 649690	n:2000000
KS ci ratio: 1.251891e-01	ci left: 4.593205e-04	ci right 5.211408e-04	k: 979	n:2000000
PDYN   2000000 perm   1759 sec   (1137 perm/sec)   p_kst 4.895000e-04   p_cons 3.248450e-01   p_joint 7.090000e-04

Joint ci ratio: 1.037701e-01	ci left: 6.726313e-04	ci right 7.467299e-04	k: 1425	n:2010000
Cons ci ratio: 3.986030e-03	ci left: 3.242083e-01	ci right 3.255037e-01	k: 652960	n:2010000
KS ci ratio: 1.247443e-01	ci left: 4.604090e-04	ci right 5.221395e-04	k: 986	n:2010000
PDYN   2010000 perm   1775 sec   (1133 perm/sec)   p_kst 4.905473e-04   p_cons 3.248557e-01   p_joint 7.089552e-04

Joint ci ratio: 1.040628e-01	ci left: 6.654438e-04	ci right 7.389701e-04	k: 1417	n:2020000
Cons ci ratio: 3.975764e-03	ci left: 3.242527e-01	ci right 3.255449e-01	k: 656295	n:2020000
KS ci ratio: 1.244923e-01	ci left: 4.600482e-04	ci right 5.215965e-04	k: 990	n:2020000
PDYN   2020000 perm   1791 sec   (1128 perm/sec)   p_kst 4.900990e-04   p_cons 3.248985e-01   p_joint 7.014851e-04

Joint ci ratio: 1.043950e-01	ci left: 6.578477e-04	ci right 7.307810e-04	k: 1408	n:2030000
Cons ci ratio: 3.965901e-03	ci left: 3.242607e-01	ci right 3.255497e-01	k: 659557	n:2030000
KS ci ratio: 1.241794e-01	ci left: 4.601684e-04	ci right 5.215667e-04	k: 995	n:2030000
PDYN   2030000 perm   1806 sec   (1124 perm/sec)   p_kst 4.901478e-04   p_cons 3.249049e-01   p_joint 6.935961e-04

Joint ci ratio: 1.040264e-01	ci left: 6.593972e-04	ci right 7.322284e-04	k: 1418	n:2040000
Cons ci ratio: 3.955851e-03	ci left: 3.242975e-01	ci right 3.255834e-01	k: 662878	n:2040000
KS ci ratio: 1.238689e-01	ci left: 4.602877e-04	ci right 5.215370e-04	k: 1000	n:2040000
PDYN   2040000 perm   1822 sec   (1119 perm/sec)   p_kst 4.901961e-04   p_cons 3.249402e-01   p_joint 6.950980e-04

Joint ci ratio: 1.038437e-01	ci left: 6.585562e-04	ci right 7.311590e-04	k: 1423	n:2050000
Cons ci ratio: 3.946324e-03	ci left: 3.242843e-01	ci right 3.255670e-01	k: 666097	n:2050000
KS ci ratio: 1.236222e-01	ci left: 4.599332e-04	ci right 5.210045e-04	k: 1004	n:2050000
PDYN   2050000 perm   1838 sec   (1115 perm/sec)   p_kst 4.897561e-04   p_cons 3.249254e-01   p_joint 6.941463e-04

Joint ci ratio: 1.035532e-01	ci left: 6.591422e-04	ci right 7.315938e-04	k: 1431	n:2060000
Cons ci ratio: 3.936352e-03	ci left: 3.243284e-01	ci right 3.256080e-01	k: 669434	n:2060000
KS ci ratio: 1.232548e-01	ci left: 4.605232e-04	ci right 5.214779e-04	k: 1010	n:2060000
PDYN   2060000 perm   1854 sec   (1111 perm/sec)   p_kst 4.902913e-04   p_cons 3.249680e-01   p_joint 6.946602e-04

Joint ci ratio: 1.033010e-01	ci left: 6.592521e-04	ci right 7.315286e-04	k: 1438	n:2070000
Cons ci ratio: 3.926567e-03	ci left: 3.243595e-01	ci right 3.256361e-01	k: 672745	n:2070000
KS ci ratio: 1.228906e-01	ci left: 4.611078e-04	ci right 5.219464e-04	k: 1016	n:2070000
PDYN   2070000 perm   1871 sec   (1107 perm/sec)   p_kst 4.908213e-04   p_cons 3.249976e-01   p_joint 6.946860e-04

Joint ci ratio: 1.031578e-01	ci left: 6.579560e-04	ci right 7.299844e-04	k: 1442	n:2080000
Cons ci ratio: 3.916945e-03	ci left: 3.243803e-01	ci right 3.256538e-01	k: 676035	n:2080000
KS ci ratio: 1.227701e-01	ci left: 4.598229e-04	ci right 5.204281e-04	k: 1018	n:2080000
PDYN   2080000 perm   1887 sec   (1102 perm/sec)   p_kst 4.894231e-04   p_cons 3.250168e-01   p_joint 6.932692e-04

Joint ci ratio: 1.035175e-01	ci left: 6.501467e-04	ci right 7.215835e-04	k: 1432	n:2090000
Cons ci ratio: 3.907768e-03	ci left: 3.243588e-01	ci right 3.256293e-01	k: 679237	n:2090000
KS ci ratio: 1.222909e-01	ci left: 4.613332e-04	ci right 5.218830e-04	k: 1026	n:2090000
PDYN   2090000 perm   1903 sec   (1098 perm/sec)   p_kst 4.909091e-04   p_cons 3.249938e-01   p_joint 6.851675e-04

Joint ci ratio: 1.032656e-01	ci left: 6.502979e-04	ci right 7.215669e-04	k: 1439	n:2100000
Cons ci ratio: 3.898080e-03	ci left: 3.244022e-01	ci right 3.256697e-01	k: 682575	n:2100000
KS ci ratio: 1.218762e-01	ci left: 4.623679e-04	ci right 5.228329e-04	k: 1033	n:2100000
PDYN   2100000 perm   1919 sec   (1094 perm/sec)   p_kst 4.919048e-04   p_cons 3.250357e-01   p_joint 6.852381e-04

Joint ci ratio: 1.028733e-01	ci left: 6.522948e-04	ci right 7.234947e-04	k: 1450	n:2110000
Cons ci ratio: 3.888956e-03	ci left: 3.243898e-01	ci right 3.256543e-01	k: 685796	n:2110000
KS ci ratio: 1.213491e-01	ci left: 4.643123e-04	ci right 5.247501e-04	k: 1042	n:2110000
PDYN   2110000 perm   1936 sec   (1090 perm/sec)   p_kst 4.938389e-04   p_cons 3.250218e-01   p_joint 6.872038e-04

Joint ci ratio: 1.025909e-01	ci left: 6.528946e-04	ci right 7.239525e-04	k: 1458	n:2120000
Cons ci ratio: 3.879511e-03	ci left: 3.244209e-01	ci right 3.256824e-01	k: 689109	n:2120000
KS ci ratio: 1.209438e-01	ci left: 4.653240e-04	ci right 5.256767e-04	k: 1049	n:2120000
PDYN   2120000 perm   1953 sec   (1086 perm/sec)   p_kst 4.948113e-04   p_cons 3.250514e-01   p_joint 6.877358e-04

Joint ci ratio: 1.024156e-01	ci left: 6.521166e-04	ci right 7.229612e-04	k: 1463	n:2130000
Cons ci ratio: 3.870458e-03	ci left: 3.244151e-01	ci right 3.256736e-01	k: 692344	n:2130000
KS ci ratio: 1.208864e-01	ci left: 4.635946e-04	ci right 5.236925e-04	k: 1050	n:2130000
PDYN   2130000 perm   1969 sec   (1082 perm/sec)   p_kst 4.929577e-04   p_cons 3.250441e-01   p_joint 6.868545e-04

Joint ci ratio: 1.036996e-01	ci left: 6.326802e-04	ci right 7.023274e-04	k: 1427	n:2140000
Cons ci ratio: 3.861455e-03	ci left: 3.244108e-01	ci right 3.256663e-01	k: 695582	n:2140000
KS ci ratio: 1.208290e-01	ci left: 4.618814e-04	ci right 5.217267e-04	k: 1051	n:2140000
PDYN   2140000 perm   1986 sec   (1078 perm/sec)   p_kst 4.911215e-04   p_cons 3.250383e-01   p_joint 6.668224e-04

Joint ci ratio: 1.034463e-01	ci left: 6.329089e-04	ci right 7.024009e-04	k: 1434	n:2150000
Cons ci ratio: 3.852421e-03	ci left: 3.244172e-01	ci right 3.256698e-01	k: 698843	n:2150000
KS ci ratio: 1.205429e-01	ci left: 4.619885e-04	ci right 5.216959e-04	k: 1056	n:2150000
PDYN   2150000 perm   2003 sec   (1074 perm/sec)   p_kst 4.911628e-04   p_cons 3.250433e-01   p_joint 6.669767e-04

Joint ci ratio: 8.977324e-02	ci left: 8.423442e-04	ci right 9.219667e-04	k: 1904	n:2160000
Cons ci ratio: 3.843483e-03	ci left: 3.244198e-01	ci right 3.256696e-01	k: 702096	n:2160000
KS ci ratio: 1.203723e-01	ci left: 4.611967e-04	ci right 5.207113e-04	k: 1059	n:2160000
PDYN   2160000 perm   2019 sec   (1070 perm/sec)   p_kst 4.902778e-04   p_cons 3.250444e-01   p_joint 8.814815e-04

Joint ci ratio: 8.958534e-02	ci left: 8.420664e-04	ci right 9.214873e-04	k: 1912	n:2170000
Cons ci ratio: 3.834699e-03	ci left: 3.244118e-01	ci right 3.256587e-01	k: 705326	n:2170000
KS ci ratio: 1.200894e-01	ci left: 4.613063e-04	ci right 5.206852e-04	k: 1064	n:2170000
PDYN   2170000 perm   2036 sec   (1066 perm/sec)   p_kst 4.903226e-04   p_cons 3.250350e-01   p_joint 8.811060e-04

Joint ci ratio: 8.939863e-02	ci left: 8.417913e-04	ci right 9.210121e-04	k: 1920	n:2180000
Cons ci ratio: 3.825599e-03	ci left: 3.244470e-01	ci right 3.256910e-01	k: 708650	n:2180000
KS ci ratio: 1.197525e-01	ci left: 4.618599e-04	ci right 5.211315e-04	k: 1070	n:2180000
PDYN   2180000 perm   2053 sec   (1062 perm/sec)   p_kst 4.908257e-04   p_cons 3.250688e-01   p_joint 8.807339e-04

Joint ci ratio: 8.905150e-02	ci left: 8.446441e-04	ci right 9.238086e-04	k: 1935	n:2190000
Cons ci ratio: 3.817017e-03	ci left: 3.244299e-01	ci right 3.256710e-01	k: 711860	n:2190000
KS ci ratio: 1.194184e-01	ci left: 4.624087e-04	ci right 5.215735e-04	k: 1076	n:2190000
PDYN   2190000 perm   2070 sec   (1058 perm/sec)   p_kst 4.913242e-04   p_cons 3.250502e-01   p_joint 8.835616e-04

Joint ci ratio: 8.884523e-02	ci left: 8.448047e-04	ci right 9.237914e-04	k: 1944	n:2200000
Cons ci ratio: 3.808274e-03	ci left: 3.244379e-01	ci right 3.256762e-01	k: 715125	n:2200000
KS ci ratio: 1.191422e-01	ci left: 4.625118e-04	ci right 5.215432e-04	k: 1081	n:2200000
PDYN   2200000 perm   2086 sec   (1054 perm/sec)   p_kst 4.913636e-04   p_cons 3.250568e-01   p_joint 8.836364e-04

Joint ci ratio: 8.850448e-02	ci left: 8.476189e-04	ci right 9.265491e-04	k: 1959	n:2210000
Cons ci ratio: 3.799522e-03	ci left: 3.244539e-01	ci right 3.256895e-01	k: 718408	n:2210000
KS ci ratio: 1.185410e-01	ci left: 4.652484e-04	ci right 5.243085e-04	k: 1092	n:2210000
PDYN   2210000 perm   2104 sec   (1051 perm/sec)   p_kst 4.941176e-04   p_cons 3.250715e-01   p_joint 8.864253e-04

Joint ci ratio: 8.984514e-02	ci left: 8.182567e-04	ci right 8.956675e-04	k: 1901	n:2220000
Cons ci ratio: 3.790844e-03	ci left: 3.244681e-01	ci right 3.257008e-01	k: 721687	n:2220000
KS ci ratio: 1.182708e-01	ci left: 4.653383e-04	ci right 5.242657e-04	k: 1097	n:2220000
PDYN   2220000 perm   2121 sec   (1047 perm/sec)   p_kst 4.941441e-04   p_cons 3.250842e-01   p_joint 8.563063e-04

Joint ci ratio: 8.965680e-02	ci left: 8.180943e-04	ci right 8.953190e-04	k: 1909	n:2230000
Cons ci ratio: 3.782149e-03	ci left: 3.244910e-01	ci right 3.257211e-01	k: 724986	n:2230000
KS ci ratio: 1.180024e-01	ci left: 4.654275e-04	ci right 5.242231e-04	k: 1102	n:2230000
PDYN   2230000 perm   2138 sec   (1043 perm/sec)   p_kst 4.941704e-04   p_cons 3.251058e-01   p_joint 8.560538e-04

Joint ci ratio: 8.991648e-02	ci left: 8.096415e-04	ci right 8.863013e-04	k: 1898	n:2240000
Cons ci ratio: 3.773671e-03	ci left: 3.244955e-01	ci right 3.257228e-01	k: 728244	n:2240000
KS ci ratio: 1.177358e-01	ci left: 4.655160e-04	ci right 5.241808e-04	k: 1107	n:2240000
PDYN   2240000 perm   2156 sec   (1039 perm/sec)   p_kst 4.941964e-04   p_cons 3.251089e-01   p_joint 8.473214e-04

Joint ci ratio: 8.986930e-02	ci left: 8.069120e-04	ci right 8.832711e-04	k: 1900	n:2250000
Cons ci ratio: 3.765097e-03	ci left: 3.245177e-01	ci right 3.257423e-01	k: 731542	n:2250000
KS ci ratio: 1.174711e-01	ci left: 4.656039e-04	ci right 5.241386e-04	k: 1112	n:2250000
PDYN   2250000 perm   2173 sec   (1035 perm/sec)   p_kst 4.942222e-04   p_cons 3.251298e-01   p_joint 8.444444e-04

Joint ci ratio: 8.970432e-02	ci left: 8.063693e-04	ci right 8.825297e-04	k: 1907	n:2260000
Cons ci ratio: 3.756850e-03	ci left: 3.245083e-01	ci right 3.257302e-01	k: 734769	n:2260000
KS ci ratio: 1.173131e-01	ci left: 4.648321e-04	ci right 5.231858e-04	k: 1115	n:2260000
PDYN   2260000 perm   2191 sec   (1032 perm/sec)   p_kst 4.933628e-04   p_cons 3.251190e-01   p_joint 8.438053e-04

Joint ci ratio: 8.963399e-02	ci left: 8.041090e-04	ci right 8.799931e-04	k: 1910	n:2270000
Cons ci ratio: 3.748566e-03	ci left: 3.245096e-01	ci right 3.257287e-01	k: 738020	n:2270000
KS ci ratio: 1.169469e-01	ci left: 4.657778e-04	ci right 5.240551e-04	k: 1122	n:2270000
PDYN   2270000 perm   2208 sec   (1028 perm/sec)   p_kst 4.942731e-04   p_cons 3.251189e-01   p_joint 8.414097e-04

Joint ci ratio: 9.034671e-02	ci left: 7.877201e-04	ci right 8.626799e-04	k: 1880	n:2280000
Cons ci ratio: 3.740565e-03	ci left: 3.244841e-01	ci right 3.257005e-01	k: 741210	n:2280000
KS ci ratio: 1.166874e-01	ci left: 4.658638e-04	ci right 5.240136e-04	k: 1127	n:2280000
PDYN   2280000 perm   2225 sec   (1025 perm/sec)   p_kst 4.942982e-04   p_cons 3.250921e-01   p_joint 8.245614e-04

Joint ci ratio: 9.015520e-02	ci left: 7.876949e-04	ci right 8.624850e-04	k: 1888	n:2290000
Cons ci ratio: 3.732211e-03	ci left: 3.245064e-01	ci right 3.257202e-01	k: 744509	n:2290000
KS ci ratio: 1.165326e-01	ci left: 4.651013e-04	ci right 5.230736e-04	k: 1130	n:2290000
PDYN   2290000 perm   2243 sec   (1021 perm/sec)   p_kst 4.934498e-04   p_cons 3.251131e-01   p_joint 8.244541e-04

Joint ci ratio: 9.001241e-02	ci left: 7.868200e-04	ci right 8.614026e-04	k: 1894	n:2300000
Cons ci ratio: 3.723864e-03	ci left: 3.245342e-01	ci right 3.257454e-01	k: 747821	n:2300000
KS ci ratio: 1.163784e-01	ci left: 4.643455e-04	ci right 5.221417e-04	k: 1133	n:2300000
PDYN   2300000 perm   2261 sec   (1017 perm/sec)   p_kst 4.926087e-04   p_cons 3.251396e-01   p_joint 8.234783e-04

Joint ci ratio: 8.982301e-02	ci left: 7.867992e-04	ci right 8.612146e-04	k: 1902	n:2310000
Cons ci ratio: 3.715345e-03	ci left: 3.245886e-01	ci right 3.257972e-01	k: 751195	n:2310000
KS ci ratio: 1.162760e-01	ci left: 4.631759e-04	ci right 5.207723e-04	k: 1135	n:2310000
PDYN   2310000 perm   2279 sec   (1014 perm/sec)   p_kst 4.913420e-04   p_cons 3.251926e-01   p_joint 8.233766e-04

Joint ci ratio: 8.963481e-02	ci left: 7.867787e-04	ci right 8.610281e-04	k: 1910	n:2320000
Cons ci ratio: 3.707500e-03	ci left: 3.245696e-01	ci right 3.257756e-01	k: 754400	n:2320000
KS ci ratio: 1.159701e-01	ci left: 4.636905e-04	ci right 5.211889e-04	k: 1141	n:2320000
PDYN   2320000 perm   2297 sec   (1010 perm/sec)   p_kst 4.918103e-04   p_cons 3.251724e-01   p_joint 8.232759e-04

Joint ci ratio: 9.092994e-02	ci left: 7.607488e-04	ci right 8.336342e-04	k: 1856	n:2330000
Cons ci ratio: 3.699539e-03	ci left: 3.245706e-01	ci right 3.257740e-01	k: 757651	n:2330000
KS ci ratio: 1.157675e-01	ci left: 4.633674e-04	ci right 5.207185e-04	k: 1145	n:2330000
PDYN   2330000 perm   2315 sec   (1007 perm/sec)   p_kst 4.914163e-04   p_cons 3.251721e-01   p_joint 7.965665e-04

Joint ci ratio: 9.073470e-02	ci left: 7.608389e-04	ci right 8.335681e-04	k: 1864	n:2340000
Cons ci ratio: 3.691412e-03	ci left: 3.245972e-01	ci right 3.257981e-01	k: 760962	n:2340000
KS ci ratio: 1.153655e-01	ci left: 4.647072e-04	ci right 5.220108e-04	k: 1153	n:2340000
PDYN   2340000 perm   2333 sec   (1003 perm/sec)   p_kst 4.927350e-04   p_cons 3.251974e-01   p_joint 7.965812e-04

Joint ci ratio: 9.056492e-02	ci left: 7.605124e-04	ci right 8.330672e-04	k: 1871	n:2350000
Cons ci ratio: 3.683632e-03	ci left: 3.245887e-01	ci right 3.257870e-01	k: 764191	n:2350000
KS ci ratio: 1.151661e-01	ci left: 4.643828e-04	ci right 5.215407e-04	k: 1157	n:2350000
PDYN   2350000 perm   2351 sec   (1000 perm/sec)   p_kst 4.923404e-04   p_cons 3.251877e-01   p_joint 7.961702e-04

Joint ci ratio: 9.046839e-02	ci left: 7.589465e-04	ci right 8.312706e-04	k: 1875	n:2360000
Cons ci ratio: 3.676046e-03	ci left: 3.245630e-01	ci right 3.257587e-01	k: 767379	n:2360000
KS ci ratio: 1.151165e-01	ci left: 4.628266e-04	ci right 5.197667e-04	k: 1158	n:2360000
PDYN   2360000 perm   2369 sec   (996 perm/sec)   p_kst 4.906780e-04   p_cons 3.251606e-01   p_joint 7.944915e-04

Joint ci ratio: 9.039624e-02	ci left: 7.569813e-04	ci right 8.290576e-04	k: 1878	n:2370000
Cons ci ratio: 3.668083e-03	ci left: 3.245880e-01	ci right 3.257812e-01	k: 770687	n:2370000
KS ci ratio: 1.149679e-01	ci left: 4.621031e-04	ci right 5.188758e-04	k: 1161	n:2370000
PDYN   2370000 perm   2387 sec   (993 perm/sec)   p_kst 4.898734e-04   p_cons 3.251844e-01   p_joint 7.924051e-04

Joint ci ratio: 9.025229e-02	ci left: 7.562648e-04	ci right 8.281521e-04	k: 1884	n:2380000
Cons ci ratio: 3.660228e-03	ci left: 3.246061e-01	ci right 3.257968e-01	k: 773979	n:2380000
KS ci ratio: 1.147213e-01	ci left: 4.622020e-04	ci right 5.188568e-04	k: 1166	n:2380000
PDYN   2380000 perm   2405 sec   (989 perm/sec)   p_kst 4.899160e-04   p_cons 3.252013e-01   p_joint 7.915966e-04

Joint ci ratio: 9.003759e-02	ci left: 7.567813e-04	ci right 8.285376e-04	k: 1893	n:2390000
Cons ci ratio: 3.652500e-03	ci left: 3.246149e-01	ci right 3.258031e-01	k: 777249	n:2390000
KS ci ratio: 1.142814e-01	ci left: 4.639260e-04	ci right 5.205593e-04	k: 1175	n:2390000
PDYN   2390000 perm   2424 sec   (986 perm/sec)   p_kst 4.916318e-04   p_cons 3.252088e-01   p_joint 7.920502e-04

Joint ci ratio: 8.968302e-02	ci left: 7.597376e-04	ci right 8.314757e-04	k: 1908	n:2400000
Cons ci ratio: 3.644852e-03	ci left: 3.246198e-01	ci right 3.258056e-01	k: 780510	n:2400000
KS ci ratio: 1.138946e-01	ci left: 4.652312e-04	ci right 5.218187e-04	k: 1183	n:2400000
PDYN   2400000 perm   2442 sec   (983 perm/sec)   p_kst 4.929167e-04   p_cons 3.252125e-01   p_joint 7.950000e-04

Joint ci ratio: 9.008550e-02	ci left: 7.496896e-04	ci right 8.208133e-04	k: 1891	n:2410000
Cons ci ratio: 3.637410e-03	ci left: 3.246057e-01	ci right 3.257889e-01	k: 783725	n:2410000
KS ci ratio: 1.137986e-01	ci left: 4.641070e-04	ci right 5.205070e-04	k: 1185	n:2410000
PDYN   2410000 perm   2461 sec   (979 perm/sec)   p_kst 4.917012e-04   p_cons 3.251971e-01   p_joint 7.846473e-04

Joint ci ratio: 8.999049e-02	ci left: 7.482074e-04	ci right 8.191117e-04	k: 1895	n:2420000
Cons ci ratio: 3.629819e-03	ci left: 3.246152e-01	ci right 3.257960e-01	k: 786997	n:2420000
KS ci ratio: 1.134166e-01	ci left: 4.654011e-04	ci right 5.217558e-04	k: 1193	n:2420000
PDYN   2420000 perm   2479 sec   (976 perm/sec)   p_kst 4.929752e-04   p_cons 3.252054e-01   p_joint 7.830579e-04

Joint ci ratio: 8.977764e-02	ci left: 7.487488e-04	ci right 8.195278e-04	k: 1904	n:2430000
Cons ci ratio: 3.622145e-03	ci left: 3.246402e-01	ci right 3.258186e-01	k: 790307	n:2430000
KS ci ratio: 1.132271e-01	ci left: 4.650853e-04	ci right 5.213014e-04	k: 1197	n:2430000
PDYN   2430000 perm   2498 sec   (973 perm/sec)   p_kst 4.925926e-04   p_cons 3.252292e-01   p_joint 7.835391e-04

Joint ci ratio: 8.968360e-02	ci left: 7.472827e-04	ci right 8.178452e-04	k: 1908	n:2440000
Cons ci ratio: 3.614787e-03	ci left: 3.246327e-01	ci right 3.258087e-01	k: 793538	n:2440000
KS ci ratio: 1.128977e-01	ci left: 4.659669e-04	ci right 5.221149e-04	k: 1204	n:2440000
PDYN   2440000 perm   2517 sec   (970 perm/sec)   p_kst 4.934426e-04   p_cons 3.252205e-01   p_joint 7.819672e-04

Joint ci ratio: 9.083386e-02	ci left: 7.250826e-04	ci right 7.944736e-04	k: 1860	n:2450000
Cons ci ratio: 3.607702e-03	ci left: 3.245975e-01	ci right 3.257711e-01	k: 796701	n:2450000
KS ci ratio: 1.125712e-01	ci left: 4.668416e-04	ci right 5.229215e-04	k: 1211	n:2450000
PDYN   2450000 perm   2535 sec   (966 perm/sec)   p_kst 4.942857e-04   p_cons 3.251841e-01   p_joint 7.591837e-04

Joint ci ratio: 9.078520e-02	ci left: 7.229296e-04	ci right 7.920755e-04	k: 1862	n:2460000
Cons ci ratio: 3.600404e-03	ci left: 3.245935e-01	ci right 3.257646e-01	k: 799940	n:2460000
KS ci ratio: 1.124785e-01	ci left: 4.657340e-04	ci right 5.216317e-04	k: 1213	n:2460000
PDYN   2460000 perm   2554 sec   (963 perm/sec)   p_kst 4.930894e-04   p_cons 3.251789e-01   p_joint 7.569106e-04

Joint ci ratio: 9.049414e-02	ci left: 7.247509e-04	ci right 7.938371e-04	k: 1874	n:2470000
Cons ci ratio: 3.593121e-03	ci left: 3.245931e-01	ci right 3.257619e-01	k: 803188	n:2470000
KS ci ratio: 1.122476e-01	ci left: 4.658158e-04	ci right 5.216010e-04	k: 1218	n:2470000
PDYN   2470000 perm   2573 sec   (960 perm/sec)   p_kst 4.931174e-04   p_cons 3.251773e-01   p_joint 7.587045e-04

Joint ci ratio: 9.032570e-02	ci left: 7.245873e-04	ci right 7.935225e-04	k: 1881	n:2480000
Cons ci ratio: 3.586199e-03	ci left: 3.245541e-01	ci right 3.257205e-01	k: 806340	n:2480000
KS ci ratio: 1.120181e-01	ci left: 4.658971e-04	ci right 5.215704e-04	k: 1223	n:2480000
PDYN   2480000 perm   2591 sec   (957 perm/sec)   p_kst 4.931452e-04   p_cons 3.251371e-01   p_joint 7.584677e-04

Joint ci ratio: 9.013432e-02	ci left: 7.248177e-04	ci right 7.936210e-04	k: 1889	n:2490000
Cons ci ratio: 3.578946e-03	ci left: 3.245607e-01	ci right 3.257248e-01	k: 809605	n:2490000
KS ci ratio: 1.118355e-01	ci left: 4.655875e-04	ci right 5.211271e-04	k: 1227	n:2490000
PDYN   2490000 perm   2611 sec   (954 perm/sec)   p_kst 4.927711e-04   p_cons 3.251426e-01   p_joint 7.586345e-04

Joint ci ratio: 9.003916e-02	ci left: 7.234824e-04	ci right 7.920826e-04	k: 1893	n:2500000
Cons ci ratio: 3.571645e-03	ci left: 3.245785e-01	ci right 3.257403e-01	k: 812898	n:2500000
KS ci ratio: 1.117901e-01	ci left: 4.641139e-04	ci right 5.194538e-04	k: 1228	n:2500000
PDYN   2500000 perm   2630 sec   (951 perm/sec)   p_kst 4.912000e-04   p_cons 3.251592e-01   p_joint 7.572000e-04

Joint ci ratio: 8.982596e-02	ci left: 7.241050e-04	ci right 7.925931e-04	k: 1902	n:2510000
Cons ci ratio: 3.564545e-03	ci left: 3.245771e-01	ci right 3.257365e-01	k: 816143	n:2510000
KS ci ratio: 1.114730e-01	ci left: 4.649759e-04	ci right 5.202509e-04	k: 1235	n:2510000
PDYN   2510000 perm   2649 sec   (947 perm/sec)   p_kst 4.920319e-04   p_cons 3.251566e-01   p_joint 7.577689e-04

Joint ci ratio: 8.966122e-02	ci left: 7.239470e-04	ci right 7.922880e-04	k: 1909	n:2520000
Cons ci ratio: 3.557374e-03	ci left: 3.245895e-01	ci right 3.257466e-01	k: 819423	n:2520000
KS ci ratio: 1.113380e-01	ci left: 4.642880e-04	ci right 5.194101e-04	k: 1238	n:2520000
PDYN   2520000 perm   2668 sec   (944 perm/sec)   p_kst 4.912698e-04   p_cons 3.251679e-01   p_joint 7.575397e-04

Joint ci ratio: 8.947403e-02	ci left: 7.241768e-04	ci right 7.923893e-04	k: 1917	n:2530000
Cons ci ratio: 3.550223e-03	ci left: 3.246046e-01	ci right 3.257594e-01	k: 822710	n:2530000
KS ci ratio: 1.110694e-01	ci left: 4.647585e-04	ci right 5.197945e-04	k: 1244	n:2530000
PDYN   2530000 perm   2688 sec   (941 perm/sec)   p_kst 4.916996e-04   p_cons 3.251818e-01   p_joint 7.577075e-04

Joint ci ratio: 8.926482e-02	ci left: 7.247898e-04	ci right 7.928921e-04	k: 1926	n:2540000
Cons ci ratio: 3.543097e-03	ci left: 3.246219e-01	ci right 3.257745e-01	k: 826003	n:2540000
KS ci ratio: 1.107584e-01	ci left: 4.656082e-04	ci right 5.205804e-04	k: 1251	n:2540000
PDYN   2540000 perm   2707 sec   (938 perm/sec)   p_kst 4.925197e-04   p_cons 3.251980e-01   p_joint 7.582677e-04

Joint ci ratio: 8.975573e-02	ci left: 7.138964e-04	ci right 7.813634e-04	k: 1905	n:2550000
Cons ci ratio: 3.536023e-03	ci left: 3.246380e-01	ci right 3.257883e-01	k: 829293	n:2550000
KS ci ratio: 1.105819e-01	ci left: 4.653075e-04	ci right 5.201510e-04	k: 1255	n:2550000
PDYN   2550000 perm   2726 sec   (935 perm/sec)   p_kst 4.921569e-04   p_cons 3.252129e-01   p_joint 7.470588e-04

Joint ci ratio: 8.963827e-02	ci left: 7.130170e-04	ci right 7.803081e-04	k: 1910	n:2560000
Cons ci ratio: 3.529170e-03	ci left: 3.246316e-01	ci right 3.257797e-01	k: 832526	n:2560000
KS ci ratio: 1.104063e-01	ci left: 4.650092e-04	ci right 5.197248e-04	k: 1259	n:2560000
PDYN   2560000 perm   2746 sec   (932 perm/sec)   p_kst 4.917969e-04   p_cons 3.252055e-01   p_joint 7.460938e-04

Joint ci ratio: 8.938133e-02	ci left: 7.144270e-04	ci right 7.816478e-04	k: 1921	n:2570000
Cons ci ratio: 3.522244e-03	ci left: 3.246393e-01	ci right 3.257852e-01	k: 835795	n:2570000
KS ci ratio: 1.101443e-01	ci left: 4.654700e-04	ci right 5.201015e-04	k: 1265	n:2570000
PDYN   2570000 perm   2766 sec   (929 perm/sec)   p_kst 4.922179e-04   p_cons 3.252121e-01   p_joint 7.474708e-04

Joint ci ratio: 8.924217e-02	ci left: 7.139315e-04	ci right 7.809957e-04	k: 1927	n:2580000
Cons ci ratio: 3.515536e-03	ci left: 3.246249e-01	ci right 3.257685e-01	k: 839007	n:2580000
KS ci ratio: 1.099275e-01	ci left: 4.655505e-04	ci right 5.200769e-04	k: 1270	n:2580000
PDYN   2580000 perm   2785 sec   (926 perm/sec)   p_kst 4.922481e-04   p_cons 3.251965e-01   p_joint 7.468992e-04

Joint ci ratio: 8.942817e-02	ci left: 7.081551e-04	ci right 7.748226e-04	k: 1919	n:2590000
Cons ci ratio: 3.508804e-03	ci left: 3.246183e-01	ci right 3.257597e-01	k: 842239	n:2590000
KS ci ratio: 1.097549e-01	ci left: 4.652550e-04	ci right 5.196557e-04	k: 1274	n:2590000
PDYN   2590000 perm   2805 sec   (923 perm/sec)   p_kst 4.918919e-04   p_cons 3.251888e-01   p_joint 7.409266e-04

Joint ci ratio: 8.935846e-02	ci left: 7.065595e-04	ci right 7.730222e-04	k: 1922	n:2600000
Cons ci ratio: 3.501976e-03	ci left: 3.246287e-01	ci right 3.257679e-01	k: 845515	n:2600000
KS ci ratio: 1.096690e-01	ci left: 4.642137e-04	ci right 5.184474e-04	k: 1276	n:2600000
PDYN   2600000 perm   2825 sec   (920 perm/sec)   p_kst 4.907692e-04   p_cons 3.251981e-01   p_joint 7.392308e-04

Joint ci ratio: 8.924256e-02	ci left: 7.057253e-04	ci right 7.720189e-04	k: 1927	n:2610000
Cons ci ratio: 3.495069e-03	ci left: 3.246539e-01	ci right 3.257909e-01	k: 848830	n:2610000
KS ci ratio: 1.094122e-01	ci left: 4.646710e-04	ci right 5.188228e-04	k: 1282	n:2610000
PDYN   2610000 perm   2845 sec   (918 perm/sec)   p_kst 4.911877e-04   p_cons 3.252222e-01   p_joint 7.383142e-04

Joint ci ratio: 8.908100e-02	ci left: 7.056439e-04	ci right 7.718036e-04	k: 1934	n:2620000
Cons ci ratio: 3.488390e-03	ci left: 3.246553e-01	ci right 3.257901e-01	k: 852083	n:2620000
KS ci ratio: 1.090726e-01	ci left: 4.658674e-04	ci right 5.199794e-04	k: 1290	n:2620000
PDYN   2620000 perm   2864 sec   (915 perm/sec)   p_kst 4.923664e-04   p_cons 3.252225e-01   p_joint 7.381679e-04

Joint ci ratio: 8.889741e-02	ci left: 7.059349e-04	ci right 7.719784e-04	k: 1942	n:2630000
Cons ci ratio: 3.481864e-03	ci left: 3.246422e-01	ci right 3.257749e-01	k: 855298	n:2630000
KS ci ratio: 1.088200e-01	ci left: 4.663153e-04	ci right 5.203458e-04	k: 1296	n:2630000
PDYN   2630000 perm   2884 sec   (912 perm/sec)   p_kst 4.927757e-04   p_cons 3.252084e-01   p_joint 7.384030e-04

Joint ci ratio: 8.880610e-02	ci left: 7.047424e-04	ci right 7.706031e-04	k: 1946	n:2640000
Cons ci ratio: 3.475159e-03	ci left: 3.246565e-01	ci right 3.257871e-01	k: 858585	n:2640000
KS ci ratio: 1.086944e-01	ci left: 4.656544e-04	ci right 5.195420e-04	k: 1299	n:2640000
PDYN   2640000 perm   2904 sec   (909 perm/sec)   p_kst 4.920455e-04   p_cons 3.252216e-01   p_joint 7.371212e-04

Joint ci ratio: 8.917365e-02	ci left: 6.961795e-04	ci right 7.615233e-04	k: 1930	n:2650000
Cons ci ratio: 3.468712e-03	ci left: 3.246428e-01	ci right 3.257712e-01	k: 861798	n:2650000
KS ci ratio: 1.083201e-01	ci left: 4.672013e-04	ci right 5.210698e-04	k: 1308	n:2650000
PDYN   2650000 perm   2924 sec   (906 perm/sec)   p_kst 4.935849e-04   p_cons 3.252068e-01   p_joint 7.283019e-04

Joint ci ratio: 8.896654e-02	ci left: 6.968704e-04	ci right 7.621192e-04	k: 1939	n:2660000
Cons ci ratio: 3.462293e-03	ci left: 3.246303e-01	ci right 3.257566e-01	k: 865014	n:2660000
KS ci ratio: 1.081138e-01	ci left: 4.672737e-04	ci right 5.210415e-04	k: 1313	n:2660000
PDYN   2660000 perm   2944 sec   (904 perm/sec)   p_kst 4.936090e-04   p_cons 3.251932e-01   p_joint 7.289474e-04

Joint ci ratio: 8.873808e-02	ci left: 6.979225e-04	ci right 7.630933e-04	k: 1949	n:2670000
Cons ci ratio: 3.455721e-03	ci left: 3.246419e-01	ci right 3.257660e-01	k: 868294	n:2670000
KS ci ratio: 1.079496e-01	ci left: 4.669812e-04	ci right 5.206286e-04	k: 1317	n:2670000
PDYN   2670000 perm   2964 sec   (901 perm/sec)   p_kst 4.932584e-04   p_cons 3.252037e-01   p_joint 7.299625e-04

Joint ci ratio: 8.855660e-02	ci left: 6.982372e-04	ci right 7.632972e-04	k: 1957	n:2680000
Cons ci ratio: 3.449270e-03	ci left: 3.246425e-01	ci right 3.257646e-01	k: 871545	n:2680000
KS ci ratio: 1.078270e-01	ci left: 4.663280e-04	ci right 5.198356e-04	k: 1320	n:2680000
PDYN   2680000 perm   2984 sec   (898 perm/sec)   p_kst 4.925373e-04   p_cons 3.252034e-01   p_joint 7.302239e-04

Joint ci ratio: 8.835375e-02	ci left: 6.989133e-04	ci right 7.638793e-04	k: 1966	n:2690000
Cons ci ratio: 3.442556e-03	ci left: 3.246814e-01	ci right 3.258015e-01	k: 874899	n:2690000
KS ci ratio: 1.075019e-01	ci left: 4.674883e-04	ci right 5.209571e-04	k: 1328	n:2690000
PDYN   2690000 perm   3005 sec   (895 perm/sec)   p_kst 4.936803e-04   p_cons 3.252413e-01   p_joint 7.308550e-04

Joint ci ratio: 8.819696e-02	ci left: 6.988601e-04	ci right 7.637000e-04	k: 1973	n:2700000
Cons ci ratio: 3.436266e-03	ci left: 3.246709e-01	ci right 3.257888e-01	k: 878120	n:2700000
KS ci ratio: 1.072600e-01	ci left: 4.679194e-04	ci right 5.213095e-04	k: 1334	n:2700000
PDYN   2700000 perm   3025 sec   (892 perm/sec)   p_kst 4.940741e-04   p_cons 3.252296e-01   p_joint 7.307407e-04

Joint ci ratio: 8.801877e-02	ci left: 6.991682e-04	ci right 7.638989e-04	k: 1981	n:2710000
Cons ci ratio: 3.429973e-03	ci left: 3.246651e-01	ci right 3.257810e-01	k: 881354	n:2710000
KS ci ratio: 1.069799e-01	ci left: 4.687066e-04	ci right 5.220381e-04	k: 1341	n:2710000
PDYN   2710000 perm   3046 sec   (890 perm/sec)   p_kst 4.948339e-04   p_cons 3.252229e-01   p_joint 7.309963e-04

Joint ci ratio: 8.775344e-02	ci left: 7.009126e-04	ci right 7.655992e-04	k: 1993	n:2720000
Cons ci ratio: 3.423605e-03	ci left: 3.246734e-01	ci right 3.257872e-01	k: 884626	n:2720000
KS ci ratio: 1.066624e-01	ci left: 4.698460e-04	ci right 5.231385e-04	k: 1349	n:2720000
PDYN   2720000 perm   3067 sec   (887 perm/sec)   p_kst 4.959559e-04   p_cons 3.252301e-01   p_joint 7.327206e-04

Joint ci ratio: 8.757793e-02	ci left: 7.012113e-04	ci right 7.657894e-04	k: 2001	n:2730000
Cons ci ratio: 3.417299e-03	ci left: 3.246784e-01	ci right 3.257901e-01	k: 887889	n:2730000
KS ci ratio: 1.063869e-01	ci left: 4.706208e-04	ci right 5.238546e-04	k: 1356	n:2730000
PDYN   2730000 perm   3088 sec   (884 perm/sec)   p_kst 4.967033e-04   p_cons 3.252341e-01   p_joint 7.329670e-04

Joint ci ratio: 8.742522e-02	ci left: 7.011510e-04	ci right 7.656052e-04	k: 2008	n:2740000
Cons ci ratio: 3.411067e-03	ci left: 3.246782e-01	ci right 3.257879e-01	k: 891138	n:2740000
KS ci ratio: 1.063086e-01	ci left: 4.696137e-04	ci right 5.226921e-04	k: 1358	n:2740000
PDYN   2740000 perm   3108 sec   (881 perm/sec)   p_kst 4.956204e-04   p_cons 3.252328e-01   p_joint 7.328467e-04

Joint ci ratio: 8.723003e-02	ci left: 7.018026e-04	ci right 7.661653e-04	k: 2017	n:2750000
Cons ci ratio: 3.404840e-03	ci left: 3.246816e-01	ci right 3.257893e-01	k: 894397	n:2750000
KS ci ratio: 1.060747e-01	ci left: 4.700299e-04	ci right 5.230311e-04	k: 1364	n:2750000
PDYN   2750000 perm   3129 sec   (879 perm/sec)   p_kst 4.960000e-04   p_cons 3.252353e-01   p_joint 7.334545e-04

Joint ci ratio: 8.808609e-02	ci left: 6.854389e-04	ci right 7.489495e-04	k: 1978	n:2760000
Cons ci ratio: 3.398737e-03	ci left: 3.246734e-01	ci right 3.257791e-01	k: 897624	n:2760000
KS ci ratio: 1.059971e-01	ci left: 4.690323e-04	ci right 5.218800e-04	k: 1366	n:2760000
PDYN   2760000 perm   3150 sec   (876 perm/sec)   p_kst 4.949275e-04   p_cons 3.252261e-01   p_joint 7.166667e-04

Joint ci ratio: 8.795288e-02	ci left: 6.850828e-04	ci right 7.484595e-04	k: 1984	n:2770000
Cons ci ratio: 3.392760e-03	ci left: 3.246534e-01	ci right 3.257571e-01	k: 900818	n:2770000
KS ci ratio: 1.057268e-01	ci left: 4.697992e-04	ci right 5.225899e-04	k: 1373	n:2770000
PDYN   2770000 perm   3171 sec   (874 perm/sec)   p_kst 4.956679e-04   p_cons 3.252051e-01   p_joint 7.162455e-04

Joint ci ratio: 8.786445e-02	ci left: 6.840256e-04	ci right 7.472377e-04	k: 1988	n:2780000
Cons ci ratio: 3.386963e-03	ci left: 3.246141e-01	ci right 3.257158e-01	k: 903958	n:2780000
KS ci ratio: 1.056116e-01	ci left: 4.691599e-04	ci right 5.218177e-04	k: 1376	n:2780000
PDYN   2780000 perm   3192 sec   (871 perm/sec)   p_kst 4.949640e-04   p_cons 3.251647e-01   p_joint 7.151079e-04

Joint ci ratio: 8.777628e-02	ci left: 6.829761e-04	ci right 7.460246e-04	k: 1992	n:2790000
Cons ci ratio: 3.380790e-03	ci left: 3.246278e-01	ci right 3.257274e-01	k: 907245	n:2790000
KS ci ratio: 1.054967e-01	ci left: 4.685252e-04	ci right 5.210510e-04	k: 1379	n:2790000
PDYN   2790000 perm   3213 sec   (868 perm/sec)   p_kst 4.942652e-04   p_cons 3.251774e-01   p_joint 7.139785e-04

Joint ci ratio: 8.762254e-02	ci left: 6.829821e-04	ci right 7.459150e-04	k: 1999	n:2800000
Cons ci ratio: 3.375044e-03	ci left: 3.245903e-01	ci right 3.256880e-01	k: 910389	n:2800000
KS ci ratio: 1.052301e-01	ci left: 4.692860e-04	ci right 5.217560e-04	k: 1386	n:2800000
PDYN   2800000 perm   3234 sec   (866 perm/sec)   p_kst 4.950000e-04   p_cons 3.251389e-01   p_joint 7.139286e-04

Joint ci ratio: 8.742602e-02	ci left: 6.836843e-04	ci right 7.465335e-04	k: 2008	n:2810000
Cons ci ratio: 3.368840e-03	ci left: 3.246164e-01	ci right 3.257121e-01	k: 913711	n:2810000
KS ci ratio: 1.050788e-01	ci left: 4.690020e-04	ci right 5.213601e-04	k: 1390	n:2810000
PDYN   2810000 perm   3255 sec   (863 perm/sec)   p_kst 4.946619e-04   p_cons 3.251641e-01   p_joint 7.145907e-04

Joint ci ratio: 8.731746e-02	ci left: 6.829942e-04	ci right 7.456980e-04	k: 2013	n:2820000
Cons ci ratio: 3.363032e-03	ci left: 3.245951e-01	ci right 3.256889e-01	k: 916900	n:2820000
KS ci ratio: 1.049280e-01	ci left: 4.687201e-04	ci right 5.209670e-04	k: 1394	n:2820000
PDYN   2820000 perm   3277 sec   (861 perm/sec)   p_kst 4.943262e-04   p_cons 3.251418e-01   p_joint 7.138298e-04

Joint ci ratio: 8.710145e-02	ci left: 6.840373e-04	ci right 7.466736e-04	k: 2023	n:2830000
Cons ci ratio: 3.356813e-03	ci left: 3.246316e-01	ci right 3.257235e-01	k: 920252	n:2830000
KS ci ratio: 1.047031e-01	ci left: 4.691284e-04	ci right 5.213018e-04	k: 1400	n:2830000
PDYN   2830000 perm   3298 sec   (858 perm/sec)   p_kst 4.946996e-04   p_cons 3.251774e-01   p_joint 7.148410e-04

Joint ci ratio: 8.799803e-02	ci left: 6.675079e-04	ci right 7.292921e-04	k: 1982	n:2840000
Cons ci ratio: 3.350776e-03	ci left: 3.246485e-01	ci right 3.257385e-01	k: 923549	n:2840000
KS ci ratio: 1.045912e-01	ci left: 4.685052e-04	ci right 5.205503e-04	k: 1403	n:2840000
PDYN   2840000 perm   3320 sec   (856 perm/sec)   p_kst 4.940141e-04   p_cons 3.251933e-01   p_joint 6.978873e-04

Joint ci ratio: 8.771090e-02	ci left: 6.696270e-04	ci right 7.313948e-04	k: 1995	n:2850000
Cons ci ratio: 3.344839e-03	ci left: 3.246565e-01	ci right 3.257446e-01	k: 926821	n:2850000
KS ci ratio: 1.042575e-01	ci left: 4.699368e-04	ci right 5.219641e-04	k: 1412	n:2850000
PDYN   2850000 perm   3341 sec   (853 perm/sec)   p_kst 4.954386e-04   p_cons 3.252004e-01   p_joint 7.000000e-04

Joint ci ratio: 8.751380e-02	ci left: 6.703636e-04	ci right 7.320532e-04	k: 2004	n:2860000
Cons ci ratio: 3.338986e-03	ci left: 3.246574e-01	ci right 3.257436e-01	k: 930073	n:2860000
KS ci ratio: 1.040368e-01	ci left: 4.703369e-04	ci right 5.222916e-04	k: 1418	n:2860000
PDYN   2860000 perm   3363 sec   (850 perm/sec)   p_kst 4.958042e-04   p_cons 3.252003e-01   p_joint 7.006993e-04

Joint ci ratio: 8.738316e-02	ci left: 6.700727e-04	ci right 7.316388e-04	k: 2010	n:2870000
Cons ci ratio: 3.333143e-03	ci left: 3.246612e-01	ci right 3.257455e-01	k: 933333	n:2870000
KS ci ratio: 1.039270e-01	ci left: 4.697162e-04	ci right 5.215442e-04	k: 1421	n:2870000
PDYN   2870000 perm   3385 sec   (848 perm/sec)   p_kst 4.951220e-04   p_cons 3.252031e-01   p_joint 7.003484e-04

Joint ci ratio: 8.731812e-02	ci left: 6.687649e-04	ci right 7.301628e-04	k: 2013	n:2880000
Cons ci ratio: 3.327364e-03	ci left: 3.246604e-01	ci right 3.257428e-01	k: 936580	n:2880000
KS ci ratio: 1.038176e-01	ci left: 4.690998e-04	ci right 5.208020e-04	k: 1424	n:2880000
PDYN   2880000 perm   3407 sec   (845 perm/sec)   p_kst 4.944444e-04   p_cons 3.252014e-01   p_joint 6.989583e-04

Joint ci ratio: 8.718835e-02	ci left: 6.684817e-04	ci right 7.297577e-04	k: 2019	n:2890000
Cons ci ratio: 3.321605e-03	ci left: 3.246610e-01	ci right 3.257415e-01	k: 939831	n:2890000
KS ci ratio: 1.036722e-01	ci left: 4.688248e-04	ci right 5.204199e-04	k: 1428	n:2890000
PDYN   2890000 perm   3429 sec   (843 perm/sec)   p_kst 4.941176e-04   p_cons 3.252010e-01   p_joint 6.986159e-04

Joint ci ratio: 8.727497e-02	ci left: 6.648273e-04	ci right 7.258320e-04	k: 2015	n:2900000
Cons ci ratio: 3.315715e-03	ci left: 3.246829e-01	ci right 3.257616e-01	k: 943144	n:2900000
KS ci ratio: 1.034553e-01	ci left: 4.692236e-04	ci right 5.207479e-04	k: 1434	n:2900000
PDYN   2900000 perm   3451 sec   (840 perm/sec)   p_kst 4.944828e-04   p_cons 3.252221e-01   p_joint 6.948276e-04

Joint ci ratio: 8.718856e-02	ci left: 6.638873e-04	ci right 7.247423e-04	k: 2019	n:2910000
Cons ci ratio: 3.310088e-03	ci left: 3.246738e-01	ci right 3.257506e-01	k: 946367	n:2910000
KS ci ratio: 1.033473e-01	ci left: 4.686154e-04	ci right 5.200160e-04	k: 1437	n:2910000
PDYN   2910000 perm   3473 sec   (838 perm/sec)   p_kst 4.938144e-04   p_cons 3.252120e-01   p_joint 6.938144e-04

Joint ci ratio: 8.705938e-02	ci left: 6.636237e-04	ci right 7.243599e-04	k: 2025	n:2920000
Cons ci ratio: 3.304674e-03	ci left: 3.246404e-01	ci right 3.257154e-01	k: 949519	n:2920000
KS ci ratio: 1.031681e-01	ci left: 4.686786e-04	ci right 5.199916e-04	k: 1442	n:2920000
PDYN   2920000 perm   3495 sec   (836 perm/sec)   p_kst 4.938356e-04   p_cons 3.251777e-01   p_joint 6.934932e-04

Joint ci ratio: 8.690937e-02	ci left: 6.636959e-04	ci right 7.243287e-04	k: 2032	n:2930000
Cons ci ratio: 3.298914e-03	ci left: 3.246568e-01	ci right 3.257299e-01	k: 952816	n:2930000
KS ci ratio: 1.028124e-01	ci left: 4.704041e-04	ci right 5.217177e-04	k: 1452	n:2930000
PDYN   2930000 perm   3517 sec   (833 perm/sec)   p_kst 4.955631e-04   p_cons 3.251932e-01   p_joint 6.935154e-04

Joint ci ratio: 8.686672e-02	ci left: 6.621039e-04	ci right 7.225600e-04	k: 2034	n:2940000
Cons ci ratio: 3.293334e-03	ci left: 3.246530e-01	ci right 3.257242e-01	k: 956054	n:2940000
KS ci ratio: 1.025656e-01	ci left: 4.711239e-04	ci right 5.223853e-04	k: 1459	n:2940000
PDYN   2940000 perm   3539 sec   (831 perm/sec)   p_kst 4.962585e-04   p_cons 3.251884e-01   p_joint 6.918367e-04

Joint ci ratio: 8.665403e-02	ci left: 6.631758e-04	ci right 7.235740e-04	k: 2044	n:2950000
Cons ci ratio: 3.287653e-03	ci left: 3.246665e-01	ci right 3.257359e-01	k: 959343	n:2950000
KS ci ratio: 1.022509e-01	ci left: 4.724996e-04	ci right 5.237434e-04	k: 1468	n:2950000
PDYN   2950000 perm   3561 sec   (828 perm/sec)   p_kst 4.976271e-04   p_cons 3.252010e-01   p_joint 6.928814e-04

Joint ci ratio: 8.648501e-02	ci left: 6.635795e-04	ci right 7.238907e-04	k: 2052	n:2960000
Cons ci ratio: 3.282408e-03	ci left: 3.246255e-01	ci right 3.256931e-01	k: 962471	n:2960000
KS ci ratio: 1.020427e-01	ci left: 4.728786e-04	ci right 5.240528e-04	k: 1474	n:2960000
PDYN   2960000 perm   3583 sec   (826 perm/sec)   p_kst 4.979730e-04   p_cons 3.251591e-01   p_joint 6.932432e-04

Joint ci ratio: 8.623329e-02	ci left: 6.652984e-04	ci right 7.255810e-04	k: 2064	n:2970000
Cons ci ratio: 3.277022e-03	ci left: 3.246070e-01	ci right 3.256728e-01	k: 965665	n:2970000
KS ci ratio: 1.018357e-01	ci left: 4.732551e-04	ci right 5.243600e-04	k: 1480	n:2970000
PDYN   2970000 perm   3606 sec   (824 perm/sec)   p_kst 4.983165e-04   p_cons 3.251397e-01   p_joint 6.949495e-04

Joint ci ratio: 8.714611e-02	ci left: 6.489489e-04	ci right 7.084042e-04	k: 2021	n:2980000
Cons ci ratio: 3.271611e-03	ci left: 3.245957e-01	ci right 3.256597e-01	k: 968880	n:2980000
KS ci ratio: 1.015959e-01	ci left: 4.739562e-04	ci right 5.250091e-04	k: 1487	n:2980000
PDYN   2980000 perm   3628 sec   (821 perm/sec)   p_kst 4.989933e-04   p_cons 3.251275e-01   p_joint 6.781879e-04

Joint ci ratio: 8.701712e-02	ci left: 6.487415e-04	ci right 7.080853e-04	k: 2027	n:2990000
Cons ci ratio: 3.266210e-03	ci left: 3.245865e-01	ci right 3.256487e-01	k: 972101	n:2990000
KS ci ratio: 1.014596e-01	ci left: 4.736749e-04	ci right 5.246250e-04	k: 1491	n:2990000
PDYN   2990000 perm   3651 sec   (819 perm/sec)   p_kst 4.986622e-04   p_cons 3.251174e-01   p_joint 6.779264e-04

Joint ci ratio: 8.691007e-02	ci left: 6.482094e-04	ci right 7.074279e-04	k: 2032	n:3000000
Cons ci ratio: 3.260775e-03	ci left: 3.245856e-01	ci right 3.256461e-01	k: 975347	n:3000000
KS ci ratio: 1.012224e-01	ci left: 4.743702e-04	ci right 5.252687e-04	k: 1498	n:3000000
PDYN   3000000 perm   3674 sec   (817 perm/sec)   p_kst 4.993333e-04   p_cons 3.251157e-01   p_joint 6.773333e-04

Joint ci ratio: 8.959638e-02	ci left: 6.070679e-04	ci right 6.643318e-04	k: 1912	n:3010000
Cons ci ratio: 3.255441e-03	ci left: 3.245748e-01	ci right 3.256335e-01	k: 978563	n:3010000
KS ci ratio: 1.010876e-01	ci left: 4.740895e-04	ci right 5.248861e-04	k: 1502	n:3010000
PDYN   3010000 perm   3696 sec   (814 perm/sec)   p_kst 4.990033e-04   p_cons 3.251040e-01   p_joint 6.352159e-04

Joint ci ratio: 8.947954e-02	ci left: 6.066763e-04	ci right 6.638247e-04	k: 1917	n:3020000
Cons ci ratio: 3.249772e-03	ci left: 3.246128e-01	ci right 3.256697e-01	k: 981926	n:3020000
KS ci ratio: 1.009869e-01	ci left: 4.734879e-04	ci right 5.241665e-04	k: 1505	n:3020000
PDYN   3020000 perm   3719 sec   (812 perm/sec)   p_kst 4.983444e-04   p_cons 3.251411e-01   p_joint 6.347682e-04

Joint ci ratio: 8.936316e-02	ci left: 6.062873e-04	ci right 6.633209e-04	k: 1922	n:3030000
Cons ci ratio: 3.244415e-03	ci left: 3.246122e-01	ci right 3.256674e-01	k: 985173	n:3030000
KS ci ratio: 1.007197e-01	ci left: 4.744990e-04	ci right 5.251434e-04	k: 1513	n:3030000
PDYN   3030000 perm   3742 sec   (810 perm/sec)   p_kst 4.993399e-04   p_cons 3.251396e-01   p_joint 6.343234e-04

Joint ci ratio: 8.929358e-02	ci left: 6.052577e-04	ci right 6.621479e-04	k: 1925	n:3040000
Cons ci ratio: 3.239204e-03	ci left: 3.245955e-01	ci right 3.256489e-01	k: 988371	n:3040000
KS ci ratio: 1.006533e-01	ci left: 4.735794e-04	ci right 5.240905e-04	k: 1515	n:3040000
PDYN   3040000 perm   3765 sec   (807 perm/sec)   p_kst 4.983553e-04   p_cons 3.251220e-01   p_joint 6.332237e-04

Joint ci ratio: 8.915482e-02	ci left: 6.051966e-04	ci right 6.619880e-04	k: 1931	n:3050000
Cons ci ratio: 3.233907e-03	ci left: 3.245940e-01	ci right 3.256457e-01	k: 991615	n:3050000
KS ci ratio: 1.005539e-01	ci left: 4.729856e-04	ci right 5.233805e-04	k: 1518	n:3050000
PDYN   3050000 perm   3788 sec   (805 perm/sec)   p_kst 4.977049e-04   p_cons 3.251197e-01   p_joint 6.331148e-04

Joint ci ratio: 8.897078e-02	ci left: 6.057750e-04	ci right 6.624972e-04	k: 1939	n:3060000
Cons ci ratio: 3.228605e-03	ci left: 3.245967e-01	ci right 3.256467e-01	k: 994872	n:3060000
KS ci ratio: 1.003230e-01	ci left: 4.736700e-04	ci right 5.240151e-04	k: 1525	n:3060000
PDYN   3060000 perm   3811 sec   (803 perm/sec)   p_kst 4.983660e-04   p_cons 3.251216e-01   p_joint 6.336601e-04

Joint ci ratio: 8.890212e-02	ci left: 6.047572e-04	ci right 6.613382e-04	k: 1942	n:3070000
Cons ci ratio: 3.223537e-03	ci left: 3.245711e-01	ci right 3.256194e-01	k: 998042	n:3070000
KS ci ratio: 1.001918e-01	ci left: 4.733973e-04	ci right 5.236438e-04	k: 1529	n:3070000
PDYN   3070000 perm   3834 sec   (801 perm/sec)   p_kst 4.980456e-04   p_cons 3.250951e-01   p_joint 6.325733e-04

Joint ci ratio: 8.876518e-02	ci left: 6.046985e-04	ci right 6.611823e-04	k: 1948	n:3080000
Cons ci ratio: 3.218397e-03	ci left: 3.245587e-01	ci right 3.256053e-01	k: 1001252	n:3080000
KS ci ratio: 1.000937e-01	ci left: 4.728100e-04	ci right 5.229421e-04	k: 1532	n:3080000
PDYN   3080000 perm   3856 sec   (799 perm/sec)   p_kst 4.974026e-04   p_cons 3.250818e-01   p_joint 6.324675e-04

Joint ci ratio: 8.862886e-02	ci left: 6.046402e-04	ci right 6.610273e-04	k: 1954	n:3090000
Cons ci ratio: 3.213348e-03	ci left: 3.245373e-01	ci right 3.255821e-01	k: 1004434	n:3090000
KS ci ratio: 9.996340e-02	ci left: 4.725419e-04	ci right 5.225766e-04	k: 1536	n:3090000
PDYN   3090000 perm   3879 sec   (797 perm/sec)   p_kst 4.970874e-04   p_cons 3.250595e-01   p_joint 6.323625e-04

Outputting figure to mutsig2_images.part000000000128/PDYN.8_773_3090000_0.00049709_0.32506_0.00063236.png
                gene_name: PDYN
               theta_stop: 0.100 
                    nperm: 3090000 
                     p_ks: 0.00050 
        ci_ks_bounds_left: 0.00047 
       ci_ks_bounds_right: 0.00052 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.00063 
     ci_joint_bounds_left: 0.00060 
    ci_joint_bounds_right: 0.00066 

Current progress: 18 percent done.
PDCD11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.426541e-02	ci left: 8.766408e-01	ci right 8.893352e-01	k: 8831	n:10000
Cons ci ratio: 3.274162e-02	ci left: 5.792819e-01	ci right 5.986662e-01	k: 5890	n:10000
KS ci ratio: 2.047888e-02	ci left: 7.774236e-01	ci right 7.936097e-01	k: 7856	n:10000
PDCD11   10000 perm   2 sec   (5153 perm/sec)   p_kst 7.856000e-01   p_cons 5.890000e-01   p_joint 8.831000e-01

Outputting figure to mutsig2_images.part000000000128/PDCD11.7_5756_10000_0.7856_0.589_0.8831.png
                gene_name: PDCD11
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 20 percent done.
PDE3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.999762e-01	ci left: 3.329057e-02	ci right 4.078224e-02	k: 369	n:10000
Cons ci ratio: 2.276270e-01	ci left: 2.551545e-02	ci right 3.216281e-02	k: 287	n:10000
KS ci ratio: 1.537925e-01	ci left: 5.629122e-02	ci right 6.576649e-02	k: 609	n:10000
PDE3A   10000 perm   2 sec   (5570 perm/sec)   p_kst 6.090000e-02   p_cons 2.870000e-02   p_joint 3.690000e-02

Joint ci ratio: 1.820756e-01	ci left: 2.058483e-02	ci right 2.475554e-02	k: 452	n:20000
Cons ci ratio: 1.634610e-01	ci left: 2.566144e-02	ci right 3.027716e-02	k: 558	n:20000
KS ci ratio: 1.091316e-01	ci left: 5.728364e-02	ci right 6.394481e-02	k: 1211	n:20000
PDE3A   20000 perm   4 sec   (5042 perm/sec)   p_kst 6.055000e-02   p_cons 2.790000e-02   p_joint 2.260000e-02

Joint ci ratio: 1.511299e-01	ci left: 2.027360e-02	ci right 2.361987e-02	k: 657	n:30000
Cons ci ratio: 1.324542e-01	ci left: 2.648489e-02	ci right 3.027385e-02	k: 850	n:30000
KS ci ratio: 8.851174e-02	ci left: 5.864411e-02	ci right 6.410788e-02	k: 1840	n:30000
PDE3A   30000 perm   6 sec   (4847 perm/sec)   p_kst 6.133333e-02   p_cons 2.833333e-02   p_joint 2.190000e-02

Joint ci ratio: 1.151626e-01	ci left: 2.652662e-02	ci right 2.979236e-02	k: 1125	n:40000
Cons ci ratio: 1.158525e-01	ci left: 2.621077e-02	ci right 2.945827e-02	k: 1112	n:40000
KS ci ratio: 7.661490e-02	ci left: 5.906683e-02	ci right 6.379708e-02	k: 2456	n:40000
PDE3A   40000 perm   9 sec   (4666 perm/sec)   p_kst 6.140000e-02   p_cons 2.780000e-02   p_joint 2.812500e-02

Joint ci ratio: 1.023150e-01	ci left: 2.705892e-02	ci right 2.999616e-02	k: 1425	n:50000
Cons ci ratio: 1.037466e-01	ci left: 2.631798e-02	ci right 2.921719e-02	k: 1387	n:50000
KS ci ratio: 6.845835e-02	ci left: 5.942938e-02	ci right 6.366170e-02	k: 3076	n:50000
PDE3A   50000 perm   11 sec   (4575 perm/sec)   p_kst 6.152000e-02   p_cons 2.774000e-02   p_joint 2.850000e-02

Joint ci ratio: 1.005954e-01	ci left: 2.344027e-02	ci right 2.593933e-02	k: 1480	n:60000
Cons ci ratio: 9.437575e-02	ci left: 2.662937e-02	ci right 2.928322e-02	k: 1676	n:60000
KS ci ratio: 6.225513e-02	ci left: 6.005043e-02	ci right 6.392541e-02	k: 3718	n:60000
PDE3A   60000 perm   13 sec   (4493 perm/sec)   p_kst 6.196667e-02   p_cons 2.793333e-02   p_joint 2.466667e-02

Joint ci ratio: 7.993497e-02	ci left: 3.188503e-02	ci right 3.455384e-02	k: 2324	n:70000
Cons ci ratio: 8.720327e-02	ci left: 2.683229e-02	ci right 2.929276e-02	k: 1963	n:70000
KS ci ratio: 5.571664e-02	ci left: 6.419981e-02	ci right 6.789341e-02	k: 4622	n:70000
PDE3A   70000 perm   16 sec   (4421 perm/sec)   p_kst 6.602857e-02   p_cons 2.804286e-02   p_joint 3.320000e-02

Outputting figure to mutsig2_images.part000000000128/PDE3A.7_3490_70000_0.066029_0.028043_0.0332.png
                gene_name: PDE3A
               theta_stop: 0.087 
                    nperm: 70000 
                     p_ks: 0.066 
        ci_ks_bounds_left: 0.064 
       ci_ks_bounds_right: 0.068 
                   p_cons: 0.028 
      ci_cons_bounds_left: 0.027 
     ci_cons_bounds_right: 0.029 
                  p_joint: 0.033 
     ci_joint_bounds_left: 0.032 
    ci_joint_bounds_right: 0.035 

Current progress: 22 percent done.
PDS5A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.033410e-02	ci left: 2.285942e-01	ci right 2.453593e-01	k: 2369	n:10000
Cons ci ratio: 9.052390e-02	ci left: 1.507053e-01	ci right 1.650946e-01	k: 1578	n:10000
KS ci ratio: 6.666854e-02	ci left: 2.482593e-01	ci right 2.654825e-01	k: 2568	n:10000
PDS5A   10000 perm   2 sec   (5208 perm/sec)   p_kst 2.568000e-01   p_cons 1.578000e-01   p_joint 2.369000e-01

Outputting figure to mutsig2_images.part000000000128/PDS5A.7_4175_10000_0.2568_0.1578_0.2369.png
                gene_name: PDS5A
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 24 percent done.
PDGFRB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.067940e-02	ci left: 6.105032e-01	ci right 6.296268e-01	k: 6201	n:10000
Cons ci ratio: 2.185325e-02	ci left: 7.544383e-01	ci right 7.712083e-01	k: 7629	n:10000
KS ci ratio: 4.193059e-02	ci left: 4.564835e-01	ci right 4.761362e-01	k: 4663	n:10000
PDGFRB   10000 perm   2 sec   (6215 perm/sec)   p_kst 4.663000e-01   p_cons 7.629000e-01   p_joint 6.201000e-01

Outputting figure to mutsig2_images.part000000000128/PDGFRB.6_3409_10000_0.4663_0.7629_0.6201.png
                gene_name: PDGFRB
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 25 percent done.
PDPR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.795385e-02	ci left: 3.047104e-01	ci right 3.229982e-01	k: 3138	n:10000
Cons ci ratio: 1.708459e-02	ci left: 8.330730e-01	ci right 8.475282e-01	k: 8404	n:10000
KS ci ratio: 7.206900e-02	ci left: 2.200047e-01	ci right 2.365539e-01	k: 2282	n:10000
PDPR   10000 perm   2 sec   (5914 perm/sec)   p_kst 2.282000e-01   p_cons 8.404000e-01   p_joint 3.138000e-01

Outputting figure to mutsig2_images.part000000000128/PDPR.6_2708_10000_0.2282_0.8404_0.3138.png
                gene_name: PDPR
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 27 percent done.
PDE3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.016747e-01	ci left: 1.227823e-01	ci right 1.360344e-01	k: 1293	n:10000
Cons ci ratio: 1.969557e-01	ci left: 3.433772e-02	ci right 4.193438e-02	k: 380	n:10000
KS ci ratio: 3.043253e-02	ci left: 6.143208e-01	ci right 6.334069e-01	k: 6239	n:10000
PDE3B   10000 perm   2 sec   (5727 perm/sec)   p_kst 6.239000e-01   p_cons 3.800000e-02   p_joint 1.293000e-01

Joint ci ratio: 7.054046e-02	ci left: 1.290118e-01	ci right 1.384949e-01	k: 2674	n:20000
Cons ci ratio: 1.365920e-01	ci left: 3.684265e-02	ci right 4.229226e-02	k: 790	n:20000
KS ci ratio: 2.172462e-02	ci left: 6.126792e-01	ci right 6.261861e-01	k: 12389	n:20000
PDE3B   20000 perm   4 sec   (5201 perm/sec)   p_kst 6.194500e-01   p_cons 3.950000e-02   p_joint 1.337000e-01

Joint ci ratio: 6.066663e-02	ci left: 1.184481e-01	ci right 1.258919e-01	k: 3664	n:30000
Cons ci ratio: 1.117486e-01	ci left: 3.719416e-02	ci right 4.162894e-02	k: 1181	n:30000
KS ci ratio: 1.776284e-02	ci left: 6.132761e-01	ci right 6.243008e-01	k: 18564	n:30000
PDE3B   30000 perm   6 sec   (4980 perm/sec)   p_kst 6.188000e-01   p_cons 3.936667e-02   p_joint 1.221333e-01

Joint ci ratio: 4.417963e-02	ci left: 1.608045e-01	ci right 1.680942e-01	k: 6577	n:40000
Cons ci ratio: 1.002380e-01	ci left: 3.497617e-02	ci right 3.869146e-02	k: 1472	n:40000
KS ci ratio: 1.484032e-02	ci left: 6.308615e-01	ci right 6.403188e-01	k: 25424	n:40000
PDE3B   40000 perm   8 sec   (4843 perm/sec)   p_kst 6.356000e-01   p_cons 3.680000e-02   p_joint 1.644250e-01

Joint ci ratio: 3.751619e-02	ci left: 1.758471e-01	ci right 1.825902e-01	k: 8960	n:50000
Cons ci ratio: 8.662929e-02	ci left: 3.763322e-02	ci right 4.106052e-02	k: 1966	n:50000
KS ci ratio: 1.347320e-02	ci left: 6.244076e-01	ci right 6.328975e-01	k: 31433	n:50000
PDE3B   50000 perm   11 sec   (4736 perm/sec)   p_kst 6.286600e-01   p_cons 3.932000e-02   p_joint 1.792000e-01

Outputting figure to mutsig2_images.part000000000128/PDE3B.5_3403_50000_0.62866_0.03932_0.1792.png
                gene_name: PDE3B
               theta_stop: 0.087 
                    nperm: 50000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.039 
      ci_cons_bounds_left: 0.038 
     ci_cons_bounds_right: 0.041 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.18 

Current progress: 29 percent done.
PDE8A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.316938e-02	ci left: 5.729622e-01	ci right 5.923896e-01	k: 5827	n:10000
Cons ci ratio: 4.247362e-02	ci left: 4.500946e-01	ci right 4.697287e-01	k: 4599	n:10000
KS ci ratio: 5.952407e-02	ci left: 2.934065e-01	ci right 3.115087e-01	k: 3024	n:10000
PDE8A   10000 perm   2 sec   (6254 perm/sec)   p_kst 3.024000e-01   p_cons 4.599000e-01   p_joint 5.827000e-01

Outputting figure to mutsig2_images.part000000000128/PDE8A.5_2578_10000_0.3024_0.4599_0.5827.png
                gene_name: PDE8A
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 31 percent done.
PDS5B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.881310e-02	ci left: 6.397543e-01	ci right 6.585588e-01	k: 6492	n:10000
KS ci ratio: 2.667938e-02	ci left: 6.741808e-01	ci right 6.925123e-01	k: 6834	n:10000
PDS5B   10000 perm   2 sec   (5572 perm/sec)   p_kst 6.834000e-01   p_cons 6.492000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000128/PDS5B.5_4480_10000_0.6834_0.6492_1.png
                gene_name: PDS5B
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 33 percent done.
PDZD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.969303e-02	ci left: 1.271849e-01	ci right 1.406292e-01	k: 1338	n:10000
Cons ci ratio: 3.181024e-02	ci left: 5.932311e-01	ci right 6.125089e-01	k: 6029	n:10000
KS ci ratio: 3.176417e-01	ci left: 1.261754e-02	ci right 1.747097e-02	k: 149	n:10000
PDZD4   10000 perm   2 sec   (6322 perm/sec)   p_kst 1.490000e-02   p_cons 6.029000e-01   p_joint 1.338000e-01

Joint ci ratio: 1.027377e-01	ci left: 6.435382e-02	ci right 7.137245e-02	k: 1356	n:20000
Cons ci ratio: 2.256732e-02	ci left: 5.945250e-01	ci right 6.081455e-01	k: 12027	n:20000
KS ci ratio: 2.114054e-01	ci left: 1.511171e-02	ci right 1.873069e-02	k: 337	n:20000
PDZD4   20000 perm   4 sec   (5691 perm/sec)   p_kst 1.685000e-02   p_cons 6.013500e-01   p_joint 6.780000e-02

Joint ci ratio: 1.102994e-01	ci left: 3.816745e-02	ci right 4.265545e-02	k: 1211	n:30000
Cons ci ratio: 1.842455e-02	ci left: 5.958334e-01	ci right 6.069470e-01	k: 18042	n:30000
KS ci ratio: 1.829841e-01	ci left: 1.368681e-02	ci right 1.647492e-02	k: 451	n:30000
PDZD4   30000 perm   6 sec   (5447 perm/sec)   p_kst 1.503333e-02   p_cons 6.014000e-01   p_joint 4.036667e-02

Joint ci ratio: 7.940699e-02	ci left: 5.514020e-02	ci right 5.972431e-02	k: 2296	n:40000
Cons ci ratio: 1.596043e-02	ci left: 5.964569e-01	ci right 6.060783e-01	k: 24051	n:40000
KS ci ratio: 1.550650e-01	ci left: 1.450452e-02	ci right 1.696651e-02	k: 628	n:40000
PDZD4   40000 perm   8 sec   (5276 perm/sec)   p_kst 1.570000e-02   p_cons 6.012750e-01   p_joint 5.740000e-02

Joint ci ratio: 7.706536e-02	ci left: 4.730079e-02	ci right 5.111176e-02	k: 2459	n:50000
Cons ci ratio: 1.452437e-02	ci left: 5.886385e-01	ci right 5.972707e-01	k: 29648	n:50000
KS ci ratio: 1.338677e-01	ci left: 1.573028e-02	ci right 1.800631e-02	k: 842	n:50000
PDZD4   50000 perm   10 sec   (5142 perm/sec)   p_kst 1.684000e-02   p_cons 5.929600e-01   p_joint 4.918000e-02

Joint ci ratio: 7.102397e-02	ci left: 4.659803e-02	ci right 5.004583e-02	k: 2898	n:60000
Cons ci ratio: 1.323129e-02	ci left: 5.900244e-01	ci right 5.978998e-01	k: 35638	n:60000
KS ci ratio: 1.210888e-01	ci left: 1.612623e-02	ci right 1.822084e-02	k: 1029	n:60000
PDZD4   60000 perm   12 sec   (5028 perm/sec)   p_kst 1.715000e-02   p_cons 5.939667e-01   p_joint 4.830000e-02

Joint ci ratio: 5.831958e-02	ci left: 5.885768e-02	ci right 6.240742e-02	k: 4243	n:70000
Cons ci ratio: 1.197158e-02	ci left: 6.013672e-01	ci right 6.086241e-01	k: 42350	n:70000
KS ci ratio: 1.123287e-01	ci left: 1.613862e-02	ci right 1.807313e-02	k: 1196	n:70000
PDZD4   70000 perm   14 sec   (4922 perm/sec)   p_kst 1.708571e-02   p_cons 6.050000e-01   p_joint 6.061429e-02

Joint ci ratio: 5.874466e-02	ci left: 5.117403e-02	ci right 5.428351e-02	k: 4217	n:80000
Cons ci ratio: 1.118904e-02	ci left: 6.020031e-01	ci right 6.087893e-01	k: 48432	n:80000
KS ci ratio: 1.055459e-01	ci left: 1.605463e-02	ci right 1.785564e-02	k: 1355	n:80000
PDZD4   80000 perm   17 sec   (4828 perm/sec)   p_kst 1.693750e-02   p_cons 6.054000e-01   p_joint 5.271250e-02

Joint ci ratio: 5.758512e-02	ci left: 4.755485e-02	ci right 5.038542e-02	k: 4406	n:90000
Cons ci ratio: 1.053639e-02	ci left: 6.027765e-01	ci right 6.091723e-01	k: 54538	n:90000
KS ci ratio: 9.959275e-02	ci left: 1.607877e-02	ci right 1.777479e-02	k: 1522	n:90000
PDZD4   90000 perm   19 sec   (4739 perm/sec)   p_kst 1.691111e-02   p_cons 6.059778e-01   p_joint 4.895556e-02

Outputting figure to mutsig2_images.part000000000128/PDZD4.5_2342_90000_0.016911_0.60598_0.048956.png
                gene_name: PDZD4
               theta_stop: 0.100 
                    nperm: 90000 
                     p_ks: 0.017 
        ci_ks_bounds_left: 0.016 
       ci_ks_bounds_right: 0.018 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.049 
     ci_joint_bounds_left: 0.048 
    ci_joint_bounds_right: 0.050 

Current progress: 35 percent done.
PDE2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.065070e-02	ci left: 3.650016e-01	ci right 3.840715e-01	k: 3745	n:10000
KS ci ratio: 1.353006e-02	ci left: 8.873914e-01	ci right 8.995783e-01	k: 8936	n:10000
PDE2A   10000 perm   2 sec   (6100 perm/sec)   p_kst 8.936000e-01   p_cons 3.745000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000128/PDE2A.4_3048_10000_0.8936_0.3745_1.png
                gene_name: PDE2A
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.38 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 37 percent done.
PDE4C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.518543e-02	ci left: 6.987770e-01	ci right 7.167018e-01	k: 7078	n:10000
Cons ci ratio: 5.747302e-02	ci left: 3.082813e-01	ci right 3.266251e-01	k: 3174	n:10000
KS ci ratio: 2.021124e-02	ci left: 7.818830e-01	ci right 7.979478e-01	k: 7900	n:10000
PDE4C   10000 perm   1 sec   (6675 perm/sec)   p_kst 7.900000e-01   p_cons 3.174000e-01   p_joint 7.078000e-01

Outputting figure to mutsig2_images.part000000000128/PDE4C.4_2349_10000_0.79_0.3174_0.7078.png
                gene_name: PDE4C
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 39 percent done.
PDE5A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.393222e-02	ci left: 5.618315e-01	ci right 5.813268e-01	k: 5716	n:10000
Cons ci ratio: 9.507050e-02	ci left: 1.383491e-01	ci right 1.522583e-01	k: 1452	n:10000
KS ci ratio: 8.487256e-03	ci left: 9.510652e-01	ci right 9.592670e-01	k: 9553	n:10000
PDE5A   10000 perm   2 sec   (6218 perm/sec)   p_kst 9.553000e-01   p_cons 1.452000e-01   p_joint 5.716000e-01

Outputting figure to mutsig2_images.part000000000128/PDE5A.4_2742_10000_0.9553_0.1452_0.5716.png
                gene_name: PDE5A
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 41 percent done.
PDIA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.822271e-02	ci left: 2.396590e-01	ci right 2.566879e-01	k: 2481	n:10000
Cons ci ratio: 6.180047e-02	ci left: 2.779488e-01	ci right 2.957755e-01	k: 2868	n:10000
KS ci ratio: 7.461446e-02	ci left: 2.081653e-01	ci right 2.244003e-01	k: 2162	n:10000
PDIA4   10000 perm   2 sec   (6294 perm/sec)   p_kst 2.162000e-01   p_cons 2.868000e-01   p_joint 2.481000e-01

Outputting figure to mutsig2_images.part000000000128/PDIA4.4_1978_10000_0.2162_0.2868_0.2481.png
                gene_name: PDIA4
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 43 percent done.
PDP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.696349e-02	ci left: 8.350072e-01	ci right 8.493928e-01	k: 8423	n:10000
KS ci ratio: 2.955702e-02	ci left: 6.279891e-01	ci right 6.469308e-01	k: 6375	n:10000
PDP1   10000 perm   2 sec   (6440 perm/sec)   p_kst 6.375000e-01   p_cons 8.423000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000128/PDP1.4_1799_10000_0.6375_0.8423_1.png
                gene_name: PDP1
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 45 percent done.
PDP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.002437e-02	ci left: 2.301744e-01	ci right 2.469782e-01	k: 2385	n:10000
Cons ci ratio: 2.242059e-02	ci left: 7.449300e-01	ci right 7.619221e-01	k: 7535	n:10000
KS ci ratio: 1.886187e-01	ci left: 3.748413e-02	ci right 4.538584e-02	k: 413	n:10000
PDP2   10000 perm   1 sec   (7070 perm/sec)   p_kst 4.130000e-02   p_cons 7.535000e-01   p_joint 2.385000e-01

Joint ci ratio: 6.051847e-02	ci left: 1.681264e-01	ci right 1.786687e-01	k: 3467	n:20000
Cons ci ratio: 1.584959e-02	ci left: 7.475663e-01	ci right 7.595599e-01	k: 15072	n:20000
KS ci ratio: 1.342244e-01	ci left: 3.814864e-02	ci right 4.368584e-02	k: 817	n:20000
PDP2   20000 perm   3 sec   (6271 perm/sec)   p_kst 4.085000e-02   p_cons 7.536000e-01   p_joint 1.733500e-01

Joint ci ratio: 6.279339e-02	ci left: 1.113450e-01	ci right 1.185964e-01	k: 3448	n:30000
Cons ci ratio: 1.296439e-02	ci left: 7.480117e-01	ci right 7.578059e-01	k: 22588	n:30000
KS ci ratio: 1.116012e-01	ci left: 3.729147e-02	ci right 4.173161e-02	k: 1184	n:30000
PDP2   30000 perm   5 sec   (5939 perm/sec)   p_kst 3.946667e-02   p_cons 7.529333e-01   p_joint 1.149333e-01

Joint ci ratio: 5.472882e-02	ci left: 1.105553e-01	ci right 1.168009e-01	k: 4546	n:40000
Cons ci ratio: 1.122851e-02	ci left: 7.486423e-01	ci right 7.571209e-01	k: 30116	n:40000
KS ci ratio: 9.642769e-02	ci left: 3.775869e-02	ci right 4.160850e-02	k: 1586	n:40000
PDP2   40000 perm   7 sec   (5755 perm/sec)   p_kst 3.965000e-02   p_cons 7.529000e-01   p_joint 1.136500e-01

Outputting figure to mutsig2_images.part000000000128/PDP2.4_1594_40000_0.03965_0.7529_0.11365.png
                gene_name: PDP2
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.040 
        ci_ks_bounds_left: 0.038 
       ci_ks_bounds_right: 0.042 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 47 percent done.
PDZD8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.667188e-02	ci left: 1.343321e-01	ci right 1.480776e-01	k: 1411	n:10000
Cons ci ratio: 7.861921e-02	ci left: 1.912134e-01	ci right 2.069623e-01	k: 1990	n:10000
KS ci ratio: 8.054346e-02	ci left: 1.837302e-01	ci right 1.992500e-01	k: 1914	n:10000
PDZD8   10000 perm   2 sec   (6264 perm/sec)   p_kst 1.914000e-01   p_cons 1.990000e-01   p_joint 1.411000e-01

Outputting figure to mutsig2_images.part000000000128/PDZD8.4_3485_10000_0.1914_0.199_0.1411.png
                gene_name: PDZD8
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.15 

Current progress: 49 percent done.
PDCD10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.957877e-03	ci left: 9.564959e-01	ci right 9.642330e-01	k: 9605	n:10000
Cons ci ratio: 1.009590e-01	ci left: 1.243474e-01	ci right 1.376684e-01	k: 1309	n:10000
KS ci ratio: 1.160350e-02	ci left: 9.139945e-01	ci right 9.247597e-01	k: 9195	n:10000
PDCD10   10000 perm   1 sec   (7352 perm/sec)   p_kst 9.195000e-01   p_cons 1.309000e-01   p_joint 9.605000e-01

Joint ci ratio: 5.493247e-03	ci left: 9.595155e-01	ci right 9.648490e-01	k: 19245	n:20000
Cons ci ratio: 7.249256e-02	ci left: 1.229069e-01	ci right 1.322016e-01	k: 2550	n:20000
KS ci ratio: 7.956997e-03	ci left: 9.201382e-01	ci right 9.275380e-01	k: 18478	n:20000
PDCD10   20000 perm   3 sec   (6586 perm/sec)   p_kst 9.239000e-01   p_cons 1.275000e-01   p_joint 9.622500e-01

Outputting figure to mutsig2_images.part000000000128/PDCD10.3_667_20000_0.9239_0.1275_0.96225.png
                gene_name: PDCD10
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.96 

Current progress: 51 percent done.
PDCL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.166009e-02	ci left: 3.558529e-01	ci right 3.748256e-01	k: 3653	n:10000
Cons ci ratio: 4.969165e-02	ci left: 3.739550e-01	ci right 3.931129e-01	k: 3835	n:10000
KS ci ratio: 5.468901e-02	ci left: 3.300180e-01	ci right 3.486756e-01	k: 3393	n:10000
PDCL3   10000 perm   1 sec   (7587 perm/sec)   p_kst 3.393000e-01   p_cons 3.835000e-01   p_joint 3.653000e-01

Outputting figure to mutsig2_images.part000000000128/PDCL3.3_744_10000_0.3393_0.3835_0.3653.png
                gene_name: PDCL3
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 53 percent done.
PDE1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.455778e-01	ci left: 6.265923e-02	ci right 7.259445e-02	k: 675	n:10000
Cons ci ratio: 2.169949e-01	ci left: 2.816365e-02	ci right 3.511272e-02	k: 315	n:10000
KS ci ratio: 2.595468e-01	ci left: 1.940213e-02	ci right 2.528070e-02	k: 222	n:10000
PDE1B   10000 perm   1 sec   (7508 perm/sec)   p_kst 2.220000e-02   p_cons 3.150000e-02   p_joint 6.750000e-02

Joint ci ratio: 2.249930e-01	ci left: 1.326674e-02	ci right 1.667640e-02	k: 298	n:20000
Cons ci ratio: 1.507536e-01	ci left: 3.023012e-02	ci right 3.520695e-02	k: 653	n:20000
KS ci ratio: 1.920746e-01	ci left: 1.843815e-02	ci right 2.240301e-02	k: 407	n:20000
PDE1B   20000 perm   3 sec   (6682 perm/sec)   p_kst 2.035000e-02   p_cons 3.265000e-02   p_joint 1.490000e-02

Joint ci ratio: 8.869151e-02	ci left: 5.841563e-02	ci right 6.386974e-02	k: 1833	n:30000
Cons ci ratio: 1.254227e-01	ci left: 2.955233e-02	ci right 3.353907e-02	k: 945	n:30000
KS ci ratio: 1.454663e-01	ci left: 2.191185e-02	ci right 2.538125e-02	k: 708	n:30000
PDE1B   30000 perm   5 sec   (6358 perm/sec)   p_kst 2.360000e-02   p_cons 3.150000e-02   p_joint 6.110000e-02

Joint ci ratio: 7.309614e-02	ci left: 6.461797e-02	ci right 6.954510e-02	k: 2682	n:40000
Cons ci ratio: 1.070664e-01	ci left: 3.068636e-02	ci right 3.418195e-02	k: 1296	n:40000
KS ci ratio: 1.278845e-01	ci left: 2.148053e-02	ci right 2.443929e-02	k: 917	n:40000
PDE1B   40000 perm   7 sec   (6037 perm/sec)   p_kst 2.292500e-02   p_cons 3.240000e-02   p_joint 6.705000e-02

Joint ci ratio: 1.085032e-01	ci left: 2.405798e-02	ci right 2.683748e-02	k: 1271	n:50000
Cons ci ratio: 9.355686e-02	ci left: 3.233085e-02	ci right 3.552356e-02	k: 1695	n:50000
KS ci ratio: 1.138517e-01	ci left: 2.183991e-02	ci right 2.449585e-02	k: 1157	n:50000
PDE1B   50000 perm   9 sec   (5859 perm/sec)   p_kst 2.314000e-02   p_cons 3.390000e-02   p_joint 2.542000e-02

Joint ci ratio: 1.238711e-01	ci left: 1.539885e-02	ci right 1.744831e-02	k: 984	n:60000
Cons ci ratio: 8.580339e-02	ci left: 3.217241e-02	ci right 3.507293e-02	k: 2016	n:60000
KS ci ratio: 1.034605e-01	ci left: 2.215643e-02	ci right 2.458997e-02	k: 1401	n:60000
PDE1B   60000 perm   11 sec   (5655 perm/sec)   p_kst 2.335000e-02   p_cons 3.360000e-02   p_joint 1.640000e-02

Joint ci ratio: 7.398497e-02	ci left: 3.712882e-02	ci right 3.999531e-02	k: 2698	n:70000
Cons ci ratio: 7.925002e-02	ci left: 3.243145e-02	ci right 3.512166e-02	k: 2363	n:70000
KS ci ratio: 9.503500e-02	ci left: 2.259974e-02	ci right 2.486855e-02	k: 1660	n:70000
PDE1B   70000 perm   13 sec   (5536 perm/sec)   p_kst 2.371429e-02   p_cons 3.375714e-02   p_joint 3.854286e-02

Outputting figure to mutsig2_images.part000000000128/PDE1B.3_1724_70000_0.023714_0.033757_0.038543.png
                gene_name: PDE1B
               theta_stop: 0.095 
                    nperm: 70000 
                     p_ks: 0.024 
        ci_ks_bounds_left: 0.023 
       ci_ks_bounds_right: 0.025 
                   p_cons: 0.034 
      ci_cons_bounds_left: 0.032 
     ci_cons_bounds_right: 0.035 
                  p_joint: 0.039 
     ci_joint_bounds_left: 0.037 
    ci_joint_bounds_right: 0.040 

Current progress: 55 percent done.
PDE4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.249378e-02	ci left: 1.765467e-01	ci right 1.918378e-01	k: 1841	n:10000
Cons ci ratio: 5.376300e-02	ci left: 3.376659e-01	ci right 3.564232e-01	k: 3470	n:10000
KS ci ratio: 9.584355e-02	ci left: 1.363893e-01	ci right 1.502192e-01	k: 1432	n:10000
PDE4B   10000 perm   2 sec   (6341 perm/sec)   p_kst 1.432000e-01   p_cons 3.470000e-01   p_joint 1.841000e-01

Outputting figure to mutsig2_images.part000000000128/PDE4B.3_2633_10000_0.1432_0.347_0.1841.png
                gene_name: PDE4B
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 57 percent done.
PDE6A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.069749e-02	ci left: 7.737760e-01	ci right 7.900594e-01	k: 7820	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
PDE6A   10000 perm   2 sec   (6640 perm/sec)   p_kst 1   p_cons 7.820000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000128/PDE6A.3_2671_10000_1_0.782_1.png
                gene_name: PDE6A
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 59 percent done.
PDE6B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.537586e-02	ci left: 8.598813e-01	ci right 8.733044e-01	k: 8667	n:10000
KS ci ratio: 1.566719e-02	ci left: 8.553907e-01	ci right 8.689975e-01	k: 8623	n:10000
PDE6B   10000 perm   2 sec   (6381 perm/sec)   p_kst 8.623000e-01   p_cons 8.667000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000128/PDE6B.3_2653_10000_0.8623_0.8667_1.png
                gene_name: PDE6B
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 61 percent done.
PDE8B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.090626e-01	ci left: 1.081269e-01	ci right 1.206987e-01	k: 1143	n:10000
Cons ci ratio: 1.639045e-01	ci left: 4.965055e-02	ci right 5.861142e-02	k: 540	n:10000
KS ci ratio: 9.076292e-02	ci left: 1.500184e-01	ci right 1.643819e-01	k: 1571	n:10000
PDE8B   10000 perm   2 sec   (6619 perm/sec)   p_kst 1.571000e-01   p_cons 5.400000e-02   p_joint 1.143000e-01

Joint ci ratio: 5.836184e-02	ci left: 1.786511e-01	ci right 1.894410e-01	k: 3680	n:20000
Cons ci ratio: 1.128981e-01	ci left: 5.363180e-02	ci right 6.009779e-02	k: 1136	n:20000
KS ci ratio: 6.252446e-02	ci left: 1.590899e-01	ci right 1.694079e-01	k: 3284	n:20000
PDE8B   20000 perm   3 sec   (5922 perm/sec)   p_kst 1.642000e-01   p_cons 5.680000e-02   p_joint 1.840000e-01

Joint ci ratio: 4.990739e-02	ci left: 1.662928e-01	ci right 1.748377e-01	k: 5116	n:30000
Cons ci ratio: 9.225331e-02	ci left: 5.414196e-02	ci right 5.941095e-02	k: 1702	n:30000
KS ci ratio: 5.134141e-02	ci left: 1.585066e-01	ci right 1.668922e-01	k: 4880	n:30000
PDE8B   30000 perm   5 sec   (5652 perm/sec)   p_kst 1.626667e-01   p_cons 5.673333e-02   p_joint 1.705333e-01

Outputting figure to mutsig2_images.part000000000128/PDE8B.3_2746_30000_0.16267_0.056733_0.17053.png
                gene_name: PDE8B
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.057 
      ci_cons_bounds_left: 0.054 
     ci_cons_bounds_right: 0.059 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.17 

Current progress: 63 percent done.
PDHA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.920119e-01	ci left: 1.511403e-02	ci right 2.037228e-02	k: 176	n:10000
Cons ci ratio: 1.032384e-01	ci left: 1.194577e-01	ci right 1.325610e-01	k: 1259	n:10000
KS ci ratio: 3.960612e-01	ci left: 7.782754e-03	ci right 1.171078e-02	k: 96	n:10000
PDHA1   10000 perm   1 sec   (7274 perm/sec)   p_kst 9.600000e-03   p_cons 1.259000e-01   p_joint 1.760000e-02

Joint ci ratio: 1.808539e-01	ci left: 2.087148e-02	ci right 2.506879e-02	k: 458	n:20000
Cons ci ratio: 7.444539e-02	ci left: 1.171992e-01	ci right 1.263111e-01	k: 2434	n:20000
KS ci ratio: 2.684301e-01	ci left: 9.133859e-03	ci right 1.201110e-02	k: 210	n:20000
PDHA1   20000 perm   3 sec   (6458 perm/sec)   p_kst 1.050000e-02   p_cons 1.217000e-01   p_joint 2.290000e-02

Joint ci ratio: 1.486093e-01	ci left: 2.097999e-02	ci right 2.437998e-02	k: 679	n:30000
Cons ci ratio: 5.961513e-02	ci left: 1.221987e-01	ci right 1.297406e-01	k: 3778	n:30000
KS ci ratio: 2.165951e-01	ci left: 9.629741e-03	ci right 1.199976e-02	k: 323	n:30000
PDHA1   30000 perm   5 sec   (6151 perm/sec)   p_kst 1.076667e-02   p_cons 1.259333e-01   p_joint 2.263333e-02

Joint ci ratio: 1.408343e-01	ci left: 1.766045e-02	ci right 2.036002e-02	k: 759	n:40000
Cons ci ratio: 5.166748e-02	ci left: 1.225402e-01	ci right 1.290643e-01	k: 5031	n:40000
KS ci ratio: 1.907267e-01	ci left: 9.452805e-03	ci right 1.146921e-02	k: 417	n:40000
PDHA1   40000 perm   7 sec   (5945 perm/sec)   p_kst 1.042500e-02   p_cons 1.257750e-01   p_joint 1.897500e-02

Joint ci ratio: 1.362716e-01	ci left: 1.516958e-02	ci right 1.740709e-02	k: 813	n:50000
Cons ci ratio: 4.639446e-02	ci left: 1.220338e-01	ci right 1.278498e-01	k: 6246	n:50000
KS ci ratio: 1.706741e-01	ci left: 9.548446e-03	ci right 1.134907e-02	k: 521	n:50000
PDHA1   50000 perm   9 sec   (5787 perm/sec)   p_kst 1.042000e-02   p_cons 1.249200e-01   p_joint 1.626000e-02

Joint ci ratio: 1.404489e-01	ci left: 1.191583e-02	ci right 1.373174e-02	k: 768	n:60000
Cons ci ratio: 4.231802e-02	ci left: 1.224627e-01	ci right 1.277736e-01	k: 7506	n:60000
KS ci ratio: 1.553532e-01	ci left: 9.683790e-03	ci right 1.133074e-02	k: 629	n:60000
PDHA1   60000 perm   11 sec   (5643 perm/sec)   p_kst 1.048333e-02   p_cons 1.251000e-01   p_joint 1.280000e-02

Joint ci ratio: 1.152531e-01	ci left: 1.531938e-02	ci right 1.720674e-02	k: 1137	n:70000
Cons ci ratio: 3.916400e-02	ci left: 1.227426e-01	ci right 1.276599e-01	k: 8763	n:70000
KS ci ratio: 1.457451e-01	ci left: 9.482641e-03	ci right 1.098694e-02	k: 715	n:70000
PDHA1   70000 perm   13 sec   (5508 perm/sec)   p_kst 1.021429e-02   p_cons 1.251857e-01   p_joint 1.624286e-02

Joint ci ratio: 1.127380e-01	ci left: 1.404754e-02	ci right 1.573791e-02	k: 1190	n:80000
Cons ci ratio: 3.670794e-02	ci left: 1.224676e-01	ci right 1.270596e-01	k: 9980	n:80000
KS ci ratio: 1.387762e-01	ci left: 9.189300e-03	ci right 1.057159e-02	k: 789	n:80000
PDHA1   80000 perm   15 sec   (5390 perm/sec)   p_kst 9.862500e-03   p_cons 1.247500e-01   p_joint 1.487500e-02

Joint ci ratio: 9.709358e-02	ci left: 1.692447e-02	ci right 1.866236e-02	k: 1600	n:90000
Cons ci ratio: 3.461851e-02	ci left: 1.225371e-01	ci right 1.268649e-01	k: 11222	n:90000
KS ci ratio: 1.303773e-01	ci left: 9.295713e-03	ci right 1.060283e-02	k: 894	n:90000
PDHA1   90000 perm   17 sec   (5280 perm/sec)   p_kst 9.933333e-03   p_cons 1.246889e-01   p_joint 1.777778e-02

Joint ci ratio: 9.237285e-02	ci left: 1.687221e-02	ci right 1.851593e-02	k: 1768	n:100000
Cons ci ratio: 3.288873e-02	ci left: 1.223405e-01	ci right 1.264413e-01	k: 12438	n:100000
KS ci ratio: 1.240936e-01	ci left: 9.266542e-03	ci right 1.050214e-02	k: 987	n:100000
PDHA1   100000 perm   19 sec   (5178 perm/sec)   p_kst 9.870000e-03   p_cons 1.243800e-01   p_joint 1.768000e-02

Joint ci ratio: 8.802575e-02	ci left: 1.692897e-02	ci right 1.849661e-02	k: 1947	n:110000
Cons ci ratio: 3.131755e-02	ci left: 1.227169e-01	ci right 1.266302e-01	k: 13713	n:110000
KS ci ratio: 1.185281e-01	ci left: 9.261563e-03	ci right 1.043722e-02	k: 1082	n:110000
PDHA1   110000 perm   22 sec   (5082 perm/sec)   p_kst 9.836364e-03   p_cons 1.246636e-01   p_joint 1.770000e-02

Joint ci ratio: 8.397887e-02	ci left: 1.708387e-02	ci right 1.858956e-02	k: 2139	n:120000
Cons ci ratio: 3.002755e-02	ci left: 1.224879e-01	ci right 1.262303e-01	k: 14922	n:120000
KS ci ratio: 1.127354e-01	ci left: 9.412339e-03	ci right 1.054486e-02	k: 1196	n:120000
PDHA1   120000 perm   24 sec   (4989 perm/sec)   p_kst 9.966667e-03   p_cons 1.243500e-01   p_joint 1.782500e-02

Joint ci ratio: 8.083236e-02	ci left: 1.705046e-02	ci right 1.849424e-02	k: 2309	n:130000
Cons ci ratio: 2.885625e-02	ci left: 1.225111e-01	ci right 1.261057e-01	k: 16159	n:130000
KS ci ratio: 1.085136e-01	ci left: 9.398861e-03	ci right 1.048470e-02	k: 1291	n:130000
PDHA1   130000 perm   27 sec   (4900 perm/sec)   p_kst 9.930769e-03   p_cons 1.243000e-01   p_joint 1.776154e-02

Joint ci ratio: 8.245936e-02	ci left: 1.523023e-02	ci right 1.654707e-02	k: 2223	n:140000
Cons ci ratio: 2.775750e-02	ci left: 1.229594e-01	ci right 1.264276e-01	k: 17456	n:140000
KS ci ratio: 1.051166e-01	ci left: 9.318417e-03	ci right 1.035918e-02	k: 1376	n:140000
PDHA1   140000 perm   29 sec   (4821 perm/sec)   p_kst 9.828571e-03   p_cons 1.246857e-01   p_joint 1.587857e-02

Joint ci ratio: 8.916936e-02	ci left: 1.215247e-02	ci right 1.329315e-02	k: 1907	n:150000
Cons ci ratio: 2.679660e-02	ci left: 1.231778e-01	ci right 1.265300e-01	k: 18727	n:150000
KS ci ratio: 1.026240e-01	ci left: 9.138701e-03	ci right 1.013372e-02	k: 1444	n:150000
PDHA1   150000 perm   32 sec   (4744 perm/sec)   p_kst 9.626667e-03   p_cons 1.248467e-01   p_joint 1.271333e-02

Joint ci ratio: 8.660117e-02	ci left: 1.209588e-02	ci right 1.319689e-02	k: 2022	n:160000
Cons ci ratio: 2.592979e-02	ci left: 1.233645e-01	ci right 1.266116e-01	k: 19997	n:160000
KS ci ratio: 9.963756e-02	ci left: 9.103613e-03	ci right 1.006428e-02	k: 1532	n:160000
PDHA1   160000 perm   34 sec   (4665 perm/sec)   p_kst 9.575000e-03   p_cons 1.249813e-01   p_joint 1.263750e-02

Outputting figure to mutsig2_images.part000000000128/PDHA1.3_1356_160000_0.009575_0.12498_0.012637.png
                gene_name: PDHA1
               theta_stop: 0.100 
                    nperm: 160000 
                     p_ks: 0.0096 
        ci_ks_bounds_left: 0.0091 
       ci_ks_bounds_right: 0.010 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.013 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.013 

Current progress: 65 percent done.
PDIA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.409676e-02	ci left: 3.348846e-01	ci right 3.536063e-01	k: 3442	n:10000
Cons ci ratio: 8.195533e-03	ci left: 9.540918e-01	ci right 9.620385e-01	k: 9582	n:10000
KS ci ratio: 1.265846e-01	ci left: 8.193541e-02	ci right 9.310624e-02	k: 874	n:10000
PDIA2   10000 perm   1 sec   (6921 perm/sec)   p_kst 8.740000e-02   p_cons 9.582000e-01   p_joint 3.442000e-01

Joint ci ratio: 4.747159e-02	ci left: 2.481767e-01	ci right 2.602948e-01	k: 5084	n:20000
Cons ci ratio: 5.378960e-03	ci left: 9.610663e-01	ci right 9.662978e-01	k: 19275	n:20000
KS ci ratio: 8.923154e-02	ci left: 8.405991e-02	ci right 9.196034e-02	k: 1759	n:20000
PDIA2   20000 perm   3 sec   (6187 perm/sec)   p_kst 8.795000e-02   p_cons 9.637500e-01   p_joint 2.542000e-01

Outputting figure to mutsig2_images.part000000000128/PDIA2.3_1622_20000_0.08795_0.96375_0.2542.png
                gene_name: PDIA2
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.088 
        ci_ks_bounds_left: 0.084 
       ci_ks_bounds_right: 0.092 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 67 percent done.
PDK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.358024e-02	ci left: 5.669450e-01	ci right 5.864103e-01	k: 5767	n:10000
Cons ci ratio: 2.956342e-02	ci left: 6.278885e-01	ci right 6.468314e-01	k: 6374	n:10000
KS ci ratio: 3.965928e-02	ci left: 4.842538e-01	ci right 5.039497e-01	k: 4941	n:10000
PDK3   10000 perm   1 sec   (7023 perm/sec)   p_kst 4.941000e-01   p_cons 6.374000e-01   p_joint 5.767000e-01

Outputting figure to mutsig2_images.part000000000128/PDK3.3_1300_10000_0.4941_0.6374_0.5767.png
                gene_name: PDK3
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 69 percent done.
PDK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.556333e-02	ci left: 6.925243e-01	ci right 7.105582e-01	k: 7016	n:10000
KS ci ratio: 2.693860e-02	ci left: 6.699500e-01	ci right 6.883455e-01	k: 6792	n:10000
PDK4   10000 perm   1 sec   (6907 perm/sec)   p_kst 6.792000e-01   p_cons 7.016000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000128/PDK4.3_1280_10000_0.6792_0.7016_1.png
                gene_name: PDK4
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
PDLIM5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.264030e-02	ci left: 5.807868e-01	ci right 6.001604e-01	k: 5905	n:10000
Cons ci ratio: 6.367975e-02	ci left: 2.659681e-01	ci right 2.835633e-01	k: 2747	n:10000
KS ci ratio: 5.305878e-03	ci left: 9.793064e-01	ci right 9.846075e-01	k: 9821	n:10000
PDLIM5   10000 perm   1 sec   (6896 perm/sec)   p_kst 9.821000e-01   p_cons 2.747000e-01   p_joint 5.905000e-01

Outputting figure to mutsig2_images.part000000000128/PDLIM5.3_1999_10000_0.9821_0.2747_0.5905.png
                gene_name: PDLIM5
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 73 percent done.
PDZD7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.876742e-02	ci left: 1.906225e-01	ci right 2.063536e-01	k: 1984	n:10000
Cons ci ratio: 7.881696e-02	ci left: 1.904255e-01	ci right 2.061507e-01	k: 1982	n:10000
KS ci ratio: 1.175301e-01	ci left: 9.418721e-02	ci right 1.060469e-01	k: 1000	n:10000
PDZD7   10000 perm   1 sec   (7138 perm/sec)   p_kst 1.000000e-01   p_cons 1.982000e-01   p_joint 1.984000e-01

Joint ci ratio: 8.587598e-02	ci left: 9.028394e-02	ci right 9.843443e-02	k: 1886	n:20000
Cons ci ratio: 5.515225e-02	ci left: 1.960585e-01	ci right 2.072284e-01	k: 4032	n:20000
KS ci ratio: 8.425854e-02	ci left: 9.352072e-02	ci right 1.017967e-01	k: 1952	n:20000
PDZD7   20000 perm   3 sec   (6373 perm/sec)   p_kst 9.760000e-02   p_cons 2.016000e-01   p_joint 9.430000e-02

Outputting figure to mutsig2_images.part000000000128/PDZD7.3_1590_20000_0.0976_0.2016_0.0943.png
                gene_name: PDZD7
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.098 
        ci_ks_bounds_left: 0.094 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.094 
     ci_joint_bounds_left: 0.090 
    ci_joint_bounds_right: 0.098 

Current progress: 75 percent done.
PDCD6IP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.572947e-02	ci left: 3.216780e-01	ci right 3.402206e-01	k: 3309	n:10000
KS ci ratio: 1.842321e-02	ci left: 8.114128e-01	ci right 8.266008e-01	k: 8191	n:10000
PDCD6IP   10000 perm   1 sec   (6795 perm/sec)   p_kst 8.191000e-01   p_cons 3.309000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000128/PDCD6IP.2_2694_10000_0.8191_0.3309_1.png
                gene_name: PDCD6IP
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
PDCL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.477448e-02	ci left: 3.293229e-01	ci right 3.479712e-01	k: 3386	n:10000
Cons ci ratio: 5.711691e-02	ci left: 3.109600e-01	ci right 3.293449e-01	k: 3201	n:10000
KS ci ratio: 3.319667e-02	ci left: 5.725610e-01	ci right 5.919910e-01	k: 5823	n:10000
PDCL   10000 perm   1 sec   (7794 perm/sec)   p_kst 5.823000e-01   p_cons 3.201000e-01   p_joint 3.386000e-01

Outputting figure to mutsig2_images.part000000000128/PDCL.2_918_10000_0.5823_0.3201_0.3386.png
                gene_name: PDCL
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 78 percent done.
PDCL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.852468e-02	ci left: 3.852013e-01	ci right 4.044600e-01	k: 3948	n:10000
Cons ci ratio: 1.017199e-01	ci left: 1.226845e-01	ci right 1.359322e-01	k: 1292	n:10000
KS ci ratio: 7.198729e-02	ci left: 2.203995e-01	ci right 2.369589e-01	k: 2286	n:10000
PDCL2   10000 perm   1 sec   (7876 perm/sec)   p_kst 2.286000e-01   p_cons 1.292000e-01   p_joint 3.948000e-01

Joint ci ratio: 6.069853e-02	ci left: 1.672867e-01	ci right 1.778086e-01	k: 3450	n:20000
Cons ci ratio: 7.439322e-02	ci left: 1.173467e-01	ci right 1.264635e-01	k: 2437	n:20000
KS ci ratio: 5.080961e-02	ci left: 2.234886e-01	ci right 2.351902e-01	k: 4586	n:20000
PDCL2   20000 perm   3 sec   (6963 perm/sec)   p_kst 2.293000e-01   p_cons 1.218500e-01   p_joint 1.725000e-01

Outputting figure to mutsig2_images.part000000000128/PDCL2.2_750_20000_0.2293_0.12185_0.1725.png
                gene_name: PDCL2
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 80 percent done.
PDDC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.389364e-02	ci left: 7.202736e-01	ci right 7.377928e-01	k: 7291	n:10000
Cons ci ratio: 4.453122e-02	ci left: 4.267492e-01	ci right 4.462878e-01	k: 4365	n:10000
KS ci ratio: 2.913003e-02	ci left: 6.347256e-01	ci right 6.535903e-01	k: 6442	n:10000
PDDC1   10000 perm   1 sec   (8011 perm/sec)   p_kst 6.442000e-01   p_cons 4.365000e-01   p_joint 7.291000e-01

Outputting figure to mutsig2_images.part000000000128/PDDC1.2_695_10000_0.6442_0.4365_0.7291.png
                gene_name: PDDC1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 82 percent done.
PDE12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.931451e-02	ci left: 6.318096e-01	ci right 6.507081e-01	k: 6413	n:10000
KS ci ratio: 2.023559e-02	ci left: 7.814775e-01	ci right 7.975535e-01	k: 7896	n:10000
PDE12   10000 perm   1 sec   (7484 perm/sec)   p_kst 7.896000e-01   p_cons 6.413000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000128/PDE12.2_1842_10000_0.7896_0.6413_1.png
                gene_name: PDE12
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
PDE1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.021345e-02	ci left: 9.315420e-01	ci right 9.412019e-01	k: 9365	n:10000
KS ci ratio: 1.881975e-02	ci left: 8.049125e-01	ci right 8.203049e-01	k: 8127	n:10000
PDE1A   10000 perm   1 sec   (7350 perm/sec)   p_kst 8.127000e-01   p_cons 9.365000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000128/PDE1A.2_1742_10000_0.8127_0.9365_1.png
                gene_name: PDE1A
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
PDE4D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.667687e-02	ci left: 4.038243e-01	ci right 4.232261e-01	k: 4135	n:10000
Cons ci ratio: 3.103201e-02	ci left: 6.050792e-01	ci right 6.242539e-01	k: 6147	n:10000
KS ci ratio: 6.811321e-02	ci left: 2.402520e-01	ci right 2.572946e-01	k: 2487	n:10000
PDE4D   10000 perm   2 sec   (6653 perm/sec)   p_kst 2.487000e-01   p_cons 6.147000e-01   p_joint 4.135000e-01

Outputting figure to mutsig2_images.part000000000128/PDE4D.2_2821_10000_0.2487_0.6147_0.4135.png
                gene_name: PDE4D
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 88 percent done.
PDE6H
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.088077e-01	ci left: 4.407042e-03	ci right 7.491475e-03	k: 58	n:10000
Cons ci ratio: 5.088077e-01	ci left: 4.407042e-03	ci right 7.491475e-03	k: 58	n:10000
KS ci ratio: 2.849127e-02	ci left: 6.448846e-01	ci right 6.636255e-01	k: 6543	n:10000
PDE6H   10000 perm   1 sec   (8583 perm/sec)   p_kst 6.543000e-01   p_cons 5.800000e-03   p_joint 5.800000e-03

Joint ci ratio: 3.467290e-01	ci left: 5.250702e-03	ci right 7.496443e-03	k: 126	n:20000
Cons ci ratio: 3.467290e-01	ci left: 5.250702e-03	ci right 7.496443e-03	k: 126	n:20000
KS ci ratio: 2.016724e-02	ci left: 6.472097e-01	ci right 6.604456e-01	k: 13077	n:20000
PDE6H   20000 perm   3 sec   (7521 perm/sec)   p_kst 6.538500e-01   p_cons 6.300000e-03   p_joint 6.300000e-03

Joint ci ratio: 2.873094e-01	ci left: 5.281277e-03	ci right 7.083037e-03	k: 184	n:30000
Cons ci ratio: 2.873094e-01	ci left: 5.281277e-03	ci right 7.083037e-03	k: 184	n:30000
KS ci ratio: 1.648550e-02	ci left: 6.479167e-01	ci right 6.587203e-01	k: 19600	n:30000
PDE6H   30000 perm   4 sec   (7121 perm/sec)   p_kst 6.533333e-01   p_cons 6.133333e-03   p_joint 6.133333e-03

Joint ci ratio: 2.544133e-01	ci left: 5.149620e-03	ci right 6.673453e-03	k: 235	n:40000
Cons ci ratio: 2.544133e-01	ci left: 5.149620e-03	ci right 6.673453e-03	k: 235	n:40000
KS ci ratio: 1.432453e-02	ci left: 6.471331e-01	ci right 6.564949e-01	k: 26073	n:40000
PDE6H   40000 perm   6 sec   (6848 perm/sec)   p_kst 6.518250e-01   p_cons 5.875000e-03   p_joint 5.875000e-03

Joint ci ratio: 2.299186e-01	ci left: 5.115511e-03	ci right 6.462842e-03	k: 288	n:50000
Cons ci ratio: 2.299186e-01	ci left: 5.115511e-03	ci right 6.462842e-03	k: 288	n:50000
KS ci ratio: 1.280059e-02	ci left: 6.480467e-01	ci right 6.564156e-01	k: 32612	n:50000
PDE6H   50000 perm   8 sec   (6644 perm/sec)   p_kst 6.522400e-01   p_cons 5.760000e-03   p_joint 5.760000e-03

Joint ci ratio: 2.086195e-01	ci left: 5.239661e-03	ci right 6.475539e-03	k: 350	n:60000
Cons ci ratio: 2.086195e-01	ci left: 5.239661e-03	ci right 6.475539e-03	k: 350	n:60000
KS ci ratio: 1.167819e-02	ci left: 6.486909e-01	ci right 6.563276e-01	k: 39151	n:60000
PDE6H   60000 perm   9 sec   (6457 perm/sec)   p_kst 6.525167e-01   p_cons 5.833333e-03   p_joint 5.833333e-03

Joint ci ratio: 1.949482e-01	ci left: 5.182916e-03	ci right 6.315788e-03	k: 401	n:70000
Cons ci ratio: 1.949482e-01	ci left: 5.182916e-03	ci right 6.315788e-03	k: 401	n:70000
KS ci ratio: 1.080994e-02	ci left: 6.490593e-01	ci right 6.561280e-01	k: 45682	n:70000
PDE6H   70000 perm   11 sec   (6298 perm/sec)   p_kst 6.526000e-01   p_cons 5.728571e-03   p_joint 5.728571e-03

Joint ci ratio: 1.836543e-01	ci left: 5.142349e-03	ci right 6.193988e-03	k: 452	n:80000
Cons ci ratio: 1.836543e-01	ci left: 5.142349e-03	ci right 6.193988e-03	k: 452	n:80000
KS ci ratio: 1.012768e-02	ci left: 6.485748e-01	ci right 6.551892e-01	k: 52151	n:80000
PDE6H   80000 perm   13 sec   (6142 perm/sec)   p_kst 6.518875e-01   p_cons 5.650000e-03   p_joint 5.650000e-03

Joint ci ratio: 1.741201e-01	ci left: 5.112275e-03	ci right 6.097780e-03	k: 503	n:90000
Cons ci ratio: 1.741201e-01	ci left: 5.112275e-03	ci right 6.097780e-03	k: 503	n:90000
KS ci ratio: 9.537468e-03	ci left: 6.492895e-01	ci right 6.555229e-01	k: 58717	n:90000
PDE6H   90000 perm   15 sec   (6001 perm/sec)   p_kst 6.524111e-01   p_cons 5.588889e-03   p_joint 5.588889e-03

Joint ci ratio: 1.662330e-01	ci left: 5.070176e-03	ci right 5.998859e-03	k: 552	n:100000
Cons ci ratio: 1.662330e-01	ci left: 5.070176e-03	ci right 5.998859e-03	k: 552	n:100000
KS ci ratio: 9.041086e-03	ci left: 6.497998e-01	ci right 6.557113e-01	k: 65276	n:100000
PDE6H   100000 perm   17 sec   (5866 perm/sec)   p_kst 6.527600e-01   p_cons 5.520000e-03   p_joint 5.520000e-03

Joint ci ratio: 1.593288e-01	ci left: 5.036556e-03	ci right 5.917099e-03	k: 601	n:110000
Cons ci ratio: 1.593288e-01	ci left: 5.036556e-03	ci right 5.917099e-03	k: 601	n:110000
KS ci ratio: 8.609041e-03	ci left: 6.505336e-01	ci right 6.561674e-01	k: 71869	n:110000
PDE6H   110000 perm   19 sec   (5743 perm/sec)   p_kst 6.533545e-01   p_cons 5.463636e-03   p_joint 5.463636e-03

Joint ci ratio: 1.522810e-01	ci left: 5.073337e-03	ci right 5.917498e-03	k: 658	n:120000
Cons ci ratio: 1.522810e-01	ci left: 5.073337e-03	ci right 5.917498e-03	k: 658	n:120000
KS ci ratio: 8.236856e-03	ci left: 6.509668e-01	ci right 6.563591e-01	k: 78440	n:120000
PDE6H   120000 perm   21 sec   (5623 perm/sec)   p_kst 6.536667e-01   p_cons 5.483333e-03   p_joint 5.483333e-03

Joint ci ratio: 1.479748e-01	ci left: 4.971792e-03	ci right 5.773591e-03	k: 697	n:130000
Cons ci ratio: 1.479748e-01	ci left: 4.971792e-03	ci right 5.773591e-03	k: 697	n:130000
KS ci ratio: 7.918918e-03	ci left: 6.507750e-01	ci right 6.559566e-01	k: 84938	n:130000
PDE6H   130000 perm   24 sec   (5513 perm/sec)   p_kst 6.533692e-01   p_cons 5.361538e-03   p_joint 5.361538e-03

Joint ci ratio: 1.426582e-01	ci left: 4.981475e-03	ci right 5.753515e-03	k: 750	n:140000
Cons ci ratio: 1.426582e-01	ci left: 4.981475e-03	ci right 5.753515e-03	k: 750	n:140000
KS ci ratio: 7.635159e-03	ci left: 6.506143e-01	ci right 6.556080e-01	k: 91436	n:140000
PDE6H   140000 perm   26 sec   (5405 perm/sec)   p_kst 6.531143e-01   p_cons 5.357143e-03   p_joint 5.357143e-03

Joint ci ratio: 1.376184e-01	ci left: 5.009628e-03	ci right 5.756354e-03	k: 806	n:150000
Cons ci ratio: 1.376184e-01	ci left: 5.009628e-03	ci right 5.756354e-03	k: 806	n:150000
KS ci ratio: 7.386162e-03	ci left: 6.500907e-01	ci right 6.549168e-01	k: 97876	n:150000
PDE6H   150000 perm   28 sec   (5307 perm/sec)   p_kst 6.525067e-01   p_cons 5.373333e-03   p_joint 5.373333e-03

Joint ci ratio: 1.326917e-01	ci left: 5.064896e-03	ci right 5.790702e-03	k: 867	n:160000
Cons ci ratio: 1.326917e-01	ci left: 5.064896e-03	ci right 5.790702e-03	k: 867	n:160000
KS ci ratio: 7.151235e-03	ci left: 6.501922e-01	ci right 6.548648e-01	k: 104405	n:160000
PDE6H   160000 perm   31 sec   (5208 perm/sec)   p_kst 6.525313e-01   p_cons 5.418750e-03   p_joint 5.418750e-03

Joint ci ratio: 1.290291e-01	ci left: 5.051449e-03	ci right 5.753816e-03	k: 917	n:170000
Cons ci ratio: 1.290291e-01	ci left: 5.051449e-03	ci right 5.753816e-03	k: 917	n:170000
KS ci ratio: 6.937477e-03	ci left: 6.502780e-01	ci right 6.548109e-01	k: 110933	n:170000
PDE6H   170000 perm   33 sec   (5113 perm/sec)   p_kst 6.525471e-01   p_cons 5.394118e-03   p_joint 5.394118e-03

Joint ci ratio: 1.255237e-01	ci left: 5.050504e-03	ci right 5.732242e-03	k: 969	n:180000
Cons ci ratio: 1.255237e-01	ci left: 5.050504e-03	ci right 5.732242e-03	k: 969	n:180000
KS ci ratio: 6.741809e-03	ci left: 6.503562e-01	ci right 6.547611e-01	k: 117461	n:180000
PDE6H   180000 perm   36 sec   (5023 perm/sec)   p_kst 6.525611e-01   p_cons 5.383333e-03   p_joint 5.383333e-03

Joint ci ratio: 1.227733e-01	ci left: 5.009068e-03	ci right 5.669320e-03	k: 1013	n:190000
Cons ci ratio: 1.227733e-01	ci left: 5.009068e-03	ci right 5.669320e-03	k: 1013	n:190000
KS ci ratio: 6.562805e-03	ci left: 6.503592e-01	ci right 6.546467e-01	k: 123976	n:190000
PDE6H   190000 perm   38 sec   (4936 perm/sec)   p_kst 6.525053e-01   p_cons 5.331579e-03   p_joint 5.331579e-03

Joint ci ratio: 1.190144e-01	ci left: 5.073798e-03	ci right 5.720665e-03	k: 1078	n:200000
Cons ci ratio: 1.190144e-01	ci left: 5.073798e-03	ci right 5.720665e-03	k: 1078	n:200000
KS ci ratio: 6.401080e-03	ci left: 6.500980e-01	ci right 6.542776e-01	k: 130438	n:200000
PDE6H   200000 perm   41 sec   (4850 perm/sec)   p_kst 6.521900e-01   p_cons 5.390000e-03   p_joint 5.390000e-03

Joint ci ratio: 1.158356e-01	ci left: 5.109516e-03	ci right 5.742349e-03	k: 1138	n:210000
Cons ci ratio: 1.158356e-01	ci left: 5.109516e-03	ci right 5.742349e-03	k: 1138	n:210000
KS ci ratio: 6.243596e-03	ci left: 6.503826e-01	ci right 6.544608e-01	k: 137009	n:210000
PDE6H   210000 perm   44 sec   (4770 perm/sec)   p_kst 6.524238e-01   p_cons 5.419048e-03   p_joint 5.419048e-03

Joint ci ratio: 1.136155e-01	ci left: 5.075936e-03	ci right 5.691752e-03	k: 1183	n:220000
Cons ci ratio: 1.136155e-01	ci left: 5.075936e-03	ci right 5.691752e-03	k: 1183	n:220000
KS ci ratio: 6.094499e-03	ci left: 6.508428e-01	ci right 6.548259e-01	k: 143624	n:220000
PDE6H   220000 perm   47 sec   (4695 perm/sec)   p_kst 6.528364e-01   p_cons 5.377273e-03   p_joint 5.377273e-03

Joint ci ratio: 1.109299e-01	ci left: 5.100339e-03	ci right 5.703533e-03	k: 1241	n:230000
Cons ci ratio: 1.109299e-01	ci left: 5.100339e-03	ci right 5.703533e-03	k: 1241	n:230000
KS ci ratio: 5.962161e-03	ci left: 6.507632e-01	ci right 6.546590e-01	k: 150124	n:230000
PDE6H   230000 perm   50 sec   (4620 perm/sec)   p_kst 6.527130e-01   p_cons 5.395652e-03   p_joint 5.395652e-03

Joint ci ratio: 1.082588e-01	ci left: 5.139083e-03	ci right 5.731291e-03	k: 1303	n:240000
Cons ci ratio: 1.082588e-01	ci left: 5.139083e-03	ci right 5.731291e-03	k: 1303	n:240000
KS ci ratio: 5.834275e-03	ci left: 6.509874e-01	ci right 6.548006e-01	k: 156695	n:240000
PDE6H   240000 perm   53 sec   (4549 perm/sec)   p_kst 6.528958e-01   p_cons 5.429167e-03   p_joint 5.429167e-03

Joint ci ratio: 1.062027e-01	ci left: 5.132047e-03	ci right 5.711510e-03	k: 1354	n:250000
Cons ci ratio: 1.062027e-01	ci left: 5.132047e-03	ci right 5.711510e-03	k: 1354	n:250000
KS ci ratio: 5.714481e-03	ci left: 6.511783e-01	ci right 6.549141e-01	k: 163262	n:250000
PDE6H   250000 perm   56 sec   (4479 perm/sec)   p_kst 6.530480e-01   p_cons 5.416000e-03   p_joint 5.416000e-03

Joint ci ratio: 1.041849e-01	ci left: 5.133144e-03	ci right 5.701044e-03	k: 1407	n:260000
Cons ci ratio: 1.041849e-01	ci left: 5.133144e-03	ci right 5.701044e-03	k: 1407	n:260000
KS ci ratio: 5.606910e-03	ci left: 6.509395e-01	ci right 6.546033e-01	k: 169721	n:260000
PDE6H   260000 perm   59 sec   (4404 perm/sec)   p_kst 6.527731e-01   p_cons 5.411538e-03   p_joint 5.411538e-03

Joint ci ratio: 1.024190e-01	ci left: 5.119818e-03	ci right 5.676065e-03	k: 1456	n:270000
Cons ci ratio: 1.024190e-01	ci left: 5.119818e-03	ci right 5.676065e-03	k: 1456	n:270000
KS ci ratio: 5.501593e-03	ci left: 6.510156e-01	ci right 6.546108e-01	k: 176260	n:270000
PDE6H   270000 perm   62 sec   (4334 perm/sec)   p_kst 6.528148e-01   p_cons 5.392593e-03   p_joint 5.392593e-03

Joint ci ratio: 1.007063e-01	ci left: 5.111002e-03	ci right 5.656456e-03	k: 1506	n:280000
Cons ci ratio: 1.007063e-01	ci left: 5.111002e-03	ci right 5.656456e-03	k: 1506	n:280000
KS ci ratio: 5.401613e-03	ci left: 6.511191e-01	ci right 6.546492e-01	k: 182808	n:280000
PDE6H   280000 perm   66 sec   (4270 perm/sec)   p_kst 6.528857e-01   p_cons 5.378571e-03   p_joint 5.378571e-03

Joint ci ratio: 9.917292e-02	ci left: 5.092776e-03	ci right 5.627527e-03	k: 1553	n:290000
Cons ci ratio: 9.917292e-02	ci left: 5.092776e-03	ci right 5.627527e-03	k: 1553	n:290000
KS ci ratio: 5.305640e-03	ci left: 6.513230e-01	ci right 6.547912e-01	k: 189387	n:290000
PDE6H   290000 perm   69 sec   (4208 perm/sec)   p_kst 6.530586e-01   p_cons 5.355172e-03   p_joint 5.355172e-03

Outputting figure to mutsig2_images.part000000000128/PDE6H.2_264_290000_0.65306_0.0053552_0.0053552.png
                gene_name: PDE6H
               theta_stop: 0.099 
                    nperm: 290000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.0054 
      ci_cons_bounds_left: 0.0051 
     ci_cons_bounds_right: 0.0056 
                  p_joint: 0.0054 
     ci_joint_bounds_left: 0.0051 
    ci_joint_bounds_right: 0.0056 

Current progress: 90 percent done.
PDE9A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.224168e-02	ci left: 9.054543e-01	ci right 9.167049e-01	k: 9112	n:10000
Cons ci ratio: 3.755887e-02	ci left: 5.114541e-01	ci right 5.311335e-01	k: 5213	n:10000
KS ci ratio: 6.135045e-02	ci left: 2.809205e-01	ci right 2.988021e-01	k: 2898	n:10000
PDE9A   10000 perm   1 sec   (7378 perm/sec)   p_kst 2.898000e-01   p_cons 5.213000e-01   p_joint 9.112000e-01

Outputting figure to mutsig2_images.part000000000128/PDE9A.2_1942_10000_0.2898_0.5213_0.9112.png
                gene_name: PDE9A
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 92 percent done.
PDGFC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.503941e-02	ci left: 7.011979e-01	ci right 7.190795e-01	k: 7102	n:10000
Cons ci ratio: 4.354932e-02	ci left: 4.377208e-01	ci right 4.573098e-01	k: 4475	n:10000
KS ci ratio: 4.890240e-02	ci left: 3.815183e-01	ci right 4.007452e-01	k: 3911	n:10000
PDGFC   10000 perm   1 sec   (7563 perm/sec)   p_kst 3.911000e-01   p_cons 4.475000e-01   p_joint 7.102000e-01

Outputting figure to mutsig2_images.part000000000128/PDGFC.2_1062_10000_0.3911_0.4475_0.7102.png
                gene_name: PDGFC
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 94 percent done.
PDK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.772759e-03	ci left: 9.676262e-01	ci right 9.742956e-01	k: 9711	n:10000
Cons ci ratio: 4.858565e-02	ci left: 3.846041e-01	ci right 4.038576e-01	k: 3942	n:10000
KS ci ratio: 1.407835e-02	ci left: 8.794036e-01	ci right 8.919707e-01	k: 8858	n:10000
PDK2   10000 perm   1 sec   (7575 perm/sec)   p_kst 8.858000e-01   p_cons 3.942000e-01   p_joint 9.711000e-01

Outputting figure to mutsig2_images.part000000000128/PDK2.2_1268_10000_0.8858_0.3942_0.9711.png
                gene_name: PDK2
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.97 

Current progress: 96 percent done.
PDSS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.299784e-02	ci left: 8.949790e-01	ci right 9.067863e-01	k: 9010	n:10000
Cons ci ratio: 5.033869e-02	ci left: 3.678862e-01	ci right 3.869853e-01	k: 3774	n:10000
KS ci ratio: 2.840317e-02	ci left: 6.462931e-01	ci right 6.650161e-01	k: 6557	n:10000
PDSS2   10000 perm   1 sec   (7578 perm/sec)   p_kst 6.557000e-01   p_cons 3.774000e-01   p_joint 9.010000e-01

Outputting figure to mutsig2_images.part000000000128/PDSS2.2_1232_10000_0.6557_0.3774_0.901.png
                gene_name: PDSS2
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.91 

Current progress: 98 percent done.
PDZD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.834130e-02	ci left: 5.011505e-01	ci right 5.208430e-01	k: 5110	n:10000
Cons ci ratio: 4.843343e-02	ci left: 3.860973e-01	ci right 4.053635e-01	k: 3957	n:10000
KS ci ratio: 1.532262e-02	ci left: 8.606980e-01	ci right 8.740872e-01	k: 8675	n:10000
PDZD3   10000 perm   1 sec   (7368 perm/sec)   p_kst 8.675000e-01   p_cons 3.957000e-01   p_joint 5.110000e-01

Outputting figure to mutsig2_images.part000000000128/PDZD3.2_1562_10000_0.8675_0.3957_0.511.png
                gene_name: PDZD3
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000128
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 128 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1723>
Subject: Job 8004384: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1723>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000129> was used as the working directory.
Started at Sun Nov 11 15:12:14 2012
Results reported at Sun Nov 11 15:18:02 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000129.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000129.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 129  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000129.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    348.96 sec.
    Max Memory :      4771 MB
    Max Swap   :      7077 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
129
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 129
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 129: processing genes 11581 - 11671
Calculating significance of each gene.
Using projection method.
11581	PDZK1	1
11582	PDZK1IP1	1
11583	PDZRN3	5.852144e-01
11584	PDZRN4	1.751416e-03
11585	PEA15	2.948440e-01
11586	PEAR1	3.723343e-01
11587	PEBP1	3.169035e-01
11588	PEBP4	1
11589	PECAM1	1
11590	PECI	7.709334e-01
11591	PECR	5.075193e-01
11592	PEF1	1
11593	PEG10	1.541225e-01
11594	PEG3	9.688267e-01
11595	PELI1	2.741629e-01
11596	PELI2	2.190105e-01
11597	PELI3	4.015079e-01
11598	PELO	1
11599	PELP1	1
11600	PEMT	1
11601	PENK	4.695900e-01
11602	PEPD	5.233977e-01
11603	PER1	9.849275e-01
11604	PER2	1
11605	PER3	1
11606	PERP	1
11607	PES1	5.980633e-01
11608	PET112L	1
11609	PEX1	9.807668e-01
11610	PEX10	6.321416e-01
11611	PEX11A	1
11612	PEX11B	3.852984e-01
11613	PEX11G	1
11614	PEX12	4.792557e-02
11615	PEX13	4.570075e-01
11616	PEX14	1
11617	PEX16	6.669916e-01
11618	PEX19	1
11619	PEX2	2.051069e-01
11620	PEX26	3.008867e-01
11621	PEX3	1
11622	PEX5	7.891258e-01
11623	PEX5L	5.148832e-01
11624	PEX6	8.166462e-01
11625	PEX7	1.748420e-01
11626	PF4	1.620958e-01
11627	PF4V1	1
11628	PFAS	7.284169e-01
11629	PFDN1	1
11630	PFDN2	1
11631	PFDN4	1
11632	PFDN5	4.859315e-01
11633	PFDN6	1
11634	PFKFB1	1.432231e-01
11635	PFKFB2	1
11636	PFKFB3	1
11637	PFKFB4	1
11638	PFKL	7.751351e-01
11639	PFKM	6.419052e-01
11640	PFKP	7.218541e-01
11641	PFN1	1
11642	PFN2	3.299475e-01
11643	PFN3	1.187318e-01
11644	PFN4	1
11645	PGA3	2.383176e-01
11646	PGA5	1
11647	PGAM1	1
11648	PGAM2	1
11649	PGAM4	4.265950e-01
11650	PGAM5	1
11651	PGAP1	4.585042e-01
11652	PGAP2	4.935225e-01
11653	PGAP3	1
11654	PGBD1	1
11655	PGBD2	1
11656	PGBD3	7.598487e-01
11657	PGBD4	5.881381e-01
11658	PGBD5	1
11659	PGC	2.534527e-01
11660	PGCP	1
11661	PGD	6.952954e-01
11662	PGF	1
11663	PGGT1B	1
11664	PGK1	3.447653e-01
11665	PGK2	6.224398e-01
11666	PGLS	1
11667	PGLYRP1	1
11668	PGLYRP2	6.590033e-01
11669	PGLYRP3	1
11670	PGLYRP4	4.847292e-01
11671	PGM1	8.483958e-01
Done

Running MutSig 2:
Scatter job 129: processing genes 11581 - 11671
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
PEG3
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.505128e-02	ci left: 1.676965e-01	ci right 1.826932e-01	k: 1751	n:10000
Cons ci ratio: 4.350532e-02	ci left: 4.382197e-01	ci right 4.578106e-01	k: 4480	n:10000
KS ci ratio: 1.343944e-01	ci left: 7.310807e-02	ci right 8.373906e-02	k: 783	n:10000
PEG3   10000 perm   2 sec   (4395 perm/sec)   p_kst 7.830000e-02   p_cons 4.480000e-01   p_joint 1.751000e-01

Joint ci ratio: 6.274169e-02	ci left: 1.581520e-01	ci right 1.684461e-01	k: 3265	n:20000
Cons ci ratio: 3.095908e-02	ci left: 4.379961e-01	ci right 4.518199e-01	k: 8898	n:20000
KS ci ratio: 9.386888e-02	ci left: 7.642315e-02	ci right 8.399943e-02	k: 1603	n:20000
PEG3   20000 perm   7 sec   (2925 perm/sec)   p_kst 8.015000e-02   p_cons 4.449000e-01   p_joint 1.632500e-01

Outputting figure to mutsig2_images.part000000000129/PEG3.24_4403_20000_0.08015_0.4449_0.16325.png
                gene_name: PEG3
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.080 
        ci_ks_bounds_left: 0.076 
       ci_ks_bounds_right: 0.084 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 3 percent done.
PDZRN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.899090e-02	ci left: 1.897361e-01	ci right 2.054405e-01	k: 1975	n:10000
Cons ci ratio: 5.490924e-02	ci left: 3.282306e-01	ci right 3.468641e-01	k: 3375	n:10000
KS ci ratio: 8.624746e-02	ci left: 1.637654e-01	ci right 1.786266e-01	k: 1711	n:10000
PDZRN4   10000 perm   2 sec   (5374 perm/sec)   p_kst 1.711000e-01   p_cons 3.375000e-01   p_joint 1.975000e-01

Outputting figure to mutsig2_images.part000000000129/PDZRN4.11_3224_10000_0.1711_0.3375_0.1975.png
                gene_name: PDZRN4
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 5 percent done.
PEX5L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.037097e-01	ci left: 1.184802e-01	ci right 1.315391e-01	k: 1249	n:10000
Cons ci ratio: 8.127917e-02	ci left: 1.809743e-01	ci right 1.964075e-01	k: 1886	n:10000
KS ci ratio: 1.024491e-01	ci left: 1.211198e-01	ci right 1.342979e-01	k: 1276	n:10000
PEX5L   10000 perm   2 sec   (5855 perm/sec)   p_kst 1.276000e-01   p_cons 1.886000e-01   p_joint 1.249000e-01

Joint ci ratio: 8.773658e-02	ci left: 8.675464e-02	ci right 9.476480e-02	k: 1814	n:20000
Cons ci ratio: 5.781394e-02	ci left: 1.814687e-01	ci right 1.923225e-01	k: 3737	n:20000
KS ci ratio: 7.285306e-02	ci left: 1.218242e-01	ci right 1.310847e-01	k: 2528	n:20000
PEX5L   20000 perm   4 sec   (5213 perm/sec)   p_kst 1.264000e-01   p_cons 1.868500e-01   p_joint 9.070000e-02

Outputting figure to mutsig2_images.part000000000129/PEX5L.10_1941_20000_0.1264_0.18685_0.0907.png
                gene_name: PEX5L
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.091 
     ci_joint_bounds_left: 0.087 
    ci_joint_bounds_right: 0.095 

Current progress: 8 percent done.
PDZRN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.154471e-02	ci left: 2.796327e-01	ci right 2.974906e-01	k: 2885	n:10000
Cons ci ratio: 3.607020e-03	ci left: 9.897211e-01	ci right 9.933838e-01	k: 9917	n:10000
KS ci ratio: 9.255073e-02	ci left: 1.450154e-01	ci right 1.591879e-01	k: 1520	n:10000
PDZRN3   10000 perm   2 sec   (5198 perm/sec)   p_kst 1.520000e-01   p_cons 9.917000e-01   p_joint 2.885000e-01

Outputting figure to mutsig2_images.part000000000129/PDZRN3.9_3241_10000_0.152_0.9917_0.2885.png
                gene_name: PDZRN3
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 11 percent done.
PEAR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.873724e-02	ci left: 6.409613e-01	ci right 6.597510e-01	k: 6504	n:10000
Cons ci ratio: 2.942928e-02	ci left: 6.299998e-01	ci right 6.489189e-01	k: 6395	n:10000
KS ci ratio: 4.130420e-02	ci left: 4.639725e-01	ci right 4.836428e-01	k: 4738	n:10000
PEAR1   10000 perm   2 sec   (5397 perm/sec)   p_kst 4.738000e-01   p_cons 6.395000e-01   p_joint 6.504000e-01

Outputting figure to mutsig2_images.part000000000129/PEAR1.6_3202_10000_0.4738_0.6395_0.6504.png
                gene_name: PEAR1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 14 percent done.
PEX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.557882e-02	ci left: 3.228692e-01	ci right 3.414287e-01	k: 3321	n:10000
Cons ci ratio: 1.212673e-01	ci left: 8.883535e-02	ci right 1.004021e-01	k: 945	n:10000
KS ci ratio: 2.463247e-02	ci left: 7.079580e-01	ci right 7.257155e-01	k: 7169	n:10000
PEX1   10000 perm   2 sec   (4971 perm/sec)   p_kst 7.169000e-01   p_cons 9.450000e-02   p_joint 3.321000e-01

Joint ci ratio: 4.311957e-02	ci left: 2.860519e-01	ci right 2.987085e-01	k: 5847	n:20000
Cons ci ratio: 8.873490e-02	ci left: 8.494170e-02	ci right 9.287829e-02	k: 1777	n:20000
KS ci ratio: 1.765007e-02	ci left: 7.051655e-01	ci right 7.177729e-01	k: 14230	n:20000
PEX1   20000 perm   4 sec   (4521 perm/sec)   p_kst 7.115000e-01   p_cons 8.885000e-02   p_joint 2.923500e-01

Outputting figure to mutsig2_images.part000000000129/PEX1.6_3948_20000_0.7115_0.08885_0.29235.png
                gene_name: PEX1
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.089 
      ci_cons_bounds_left: 0.085 
     ci_cons_bounds_right: 0.093 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 16 percent done.
PFAS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.907576e-02	ci left: 2.965789e-01	ci right 3.147345e-01	k: 3056	n:10000
Cons ci ratio: 4.431467e-02	ci left: 4.291426e-01	ci right 4.486930e-01	k: 4389	n:10000
KS ci ratio: 1.333818e-01	ci left: 7.417406e-02	ci right 8.487241e-02	k: 794	n:10000
PFAS   10000 perm   2 sec   (5507 perm/sec)   p_kst 7.940000e-02   p_cons 4.389000e-01   p_joint 3.056000e-01

Joint ci ratio: 5.545381e-02	ci left: 1.943269e-01	ci right 2.054605e-01	k: 3997	n:20000
Cons ci ratio: 3.120469e-02	ci left: 4.341029e-01	ci right 4.479143e-01	k: 8820	n:20000
KS ci ratio: 9.308249e-02	ci left: 7.764631e-02	ci right 8.527589e-02	k: 1628	n:20000
PFAS   20000 perm   4 sec   (4993 perm/sec)   p_kst 8.140000e-02   p_cons 4.410000e-01   p_joint 1.998500e-01

Outputting figure to mutsig2_images.part000000000129/PFAS.6_4125_20000_0.0814_0.441_0.19985.png
                gene_name: PFAS
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.081 
        ci_ks_bounds_left: 0.078 
       ci_ks_bounds_right: 0.085 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 19 percent done.
PER1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.298328e-02	ci left: 8.951842e-01	ci right 9.069810e-01	k: 9012	n:10000
Cons ci ratio: 4.499582e-02	ci left: 4.216640e-01	ci right 4.411760e-01	k: 4314	n:10000
KS ci ratio: 6.748669e-03	ci left: 9.678372e-01	ci right 9.744845e-01	k: 9713	n:10000
PER1   10000 perm   2 sec   (5578 perm/sec)   p_kst 9.713000e-01   p_cons 4.314000e-01   p_joint 9.012000e-01

Outputting figure to mutsig2_images.part000000000129/PER1.5_3961_10000_0.9713_0.4314_0.9012.png
                gene_name: PER1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 22 percent done.
PFKM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.947173e-02	ci left: 3.760446e-01	ci right 3.952221e-01	k: 3856	n:10000
Cons ci ratio: 1.037097e-01	ci left: 1.184802e-01	ci right 1.315391e-01	k: 1249	n:10000
KS ci ratio: 3.728889e-02	ci left: 5.150563e-01	ci right 5.347292e-01	k: 5249	n:10000
PFKM   10000 perm   2 sec   (5883 perm/sec)   p_kst 5.249000e-01   p_cons 1.249000e-01   p_joint 3.856000e-01

Joint ci ratio: 3.338574e-02	ci left: 4.011776e-01	ci right 4.148492e-01	k: 8160	n:20000
Cons ci ratio: 7.646149e-02	ci left: 1.116914e-01	ci right 1.206206e-01	k: 2322	n:20000
KS ci ratio: 2.619514e-02	ci left: 5.212528e-01	ci right 5.351390e-01	k: 10564	n:20000
PFKM   20000 perm   4 sec   (5323 perm/sec)   p_kst 5.282000e-01   p_cons 1.161000e-01   p_joint 4.080000e-01

Outputting figure to mutsig2_images.part000000000129/PFKM.5_2652_20000_0.5282_0.1161_0.408.png
                gene_name: PFKM
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.41 

Current progress: 24 percent done.
PGBD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.052552e-01	ci left: 1.153530e-01	ci right 1.282683e-01	k: 1217	n:10000
Cons ci ratio: 7.546088e-02	ci left: 2.044183e-01	ci right 2.205496e-01	k: 2124	n:10000
KS ci ratio: 1.463924e-01	ci left: 6.198316e-02	ci right 7.187095e-02	k: 668	n:10000
PGBD3   10000 perm   1 sec   (6844 perm/sec)   p_kst 6.680000e-02   p_cons 2.124000e-01   p_joint 1.217000e-01

Joint ci ratio: 9.783690e-02	ci left: 7.065356e-02	ci right 7.797078e-02	k: 1485	n:20000
Cons ci ratio: 5.025542e-02	ci left: 2.273536e-01	ci right 2.391241e-01	k: 4664	n:20000
KS ci ratio: 1.052995e-01	ci left: 6.137797e-02	ci right 6.824922e-02	k: 1295	n:20000
PGBD3   20000 perm   3 sec   (6068 perm/sec)   p_kst 6.475000e-02   p_cons 2.332000e-01   p_joint 7.425000e-02

Joint ci ratio: 8.965876e-02	ci left: 5.720815e-02	ci right 6.261080e-02	k: 1796	n:30000
Cons ci ratio: 4.128557e-02	ci left: 2.262733e-01	ci right 2.358455e-01	k: 6931	n:30000
KS ci ratio: 8.669482e-02	ci left: 6.102746e-02	ci right 6.659071e-02	k: 1913	n:30000
PGBD3   30000 perm   5 sec   (5794 perm/sec)   p_kst 6.376667e-02   p_cons 2.310333e-01   p_joint 5.986667e-02

Outputting figure to mutsig2_images.part000000000129/PGBD3.5_1786_30000_0.063767_0.23103_0.059867.png
                gene_name: PGBD3
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.064 
        ci_ks_bounds_left: 0.061 
       ci_ks_bounds_right: 0.067 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.060 
     ci_joint_bounds_left: 0.057 
    ci_joint_bounds_right: 0.063 

Current progress: 27 percent done.
PEG10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.383106e-02	ci left: 2.117161e-01	ci right 2.280474e-01	k: 2198	n:10000
Cons ci ratio: 2.555112e-02	ci left: 6.927260e-01	ci right 7.107564e-01	k: 7018	n:10000
KS ci ratio: 1.478182e-01	ci left: 6.082454e-02	ci right 7.063030e-02	k: 656	n:10000
PEG10   10000 perm   2 sec   (6418 perm/sec)   p_kst 6.560000e-02   p_cons 7.018000e-01   p_joint 2.198000e-01

Joint ci ratio: 7.029796e-02	ci left: 1.297998e-01	ci right 1.393067e-01	k: 2690	n:20000
Cons ci ratio: 1.746322e-02	ci left: 7.095434e-01	ci right 7.220938e-01	k: 14317	n:20000
KS ci ratio: 1.057364e-01	ci left: 6.089032e-02	ci right 6.773701e-02	k: 1285	n:20000
PEG10   20000 perm   3 sec   (5741 perm/sec)   p_kst 6.425000e-02   p_cons 7.158500e-01   p_joint 1.345000e-01

Joint ci ratio: 5.402304e-02	ci left: 1.452517e-01	ci right 1.533497e-01	k: 4478	n:30000
Cons ci ratio: 1.420562e-02	ci left: 7.122338e-01	ci right 7.224574e-01	k: 21521	n:30000
KS ci ratio: 8.539170e-02	ci left: 6.282390e-02	ci right 6.846057e-02	k: 1968	n:30000
PEG10   30000 perm   6 sec   (5363 perm/sec)   p_kst 6.560000e-02   p_cons 7.173667e-01   p_joint 1.492667e-01

Outputting figure to mutsig2_images.part000000000129/PEG10.4_2362_30000_0.0656_0.71737_0.14927.png
                gene_name: PEG10
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.066 
        ci_ks_bounds_left: 0.063 
       ci_ks_bounds_right: 0.068 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.15 

Current progress: 30 percent done.
PEX12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.680366e-02	ci left: 8.375528e-01	ci right 8.518458e-01	k: 8448	n:10000
KS ci ratio: 2.627951e-02	ci left: 6.807302e-01	ci right 6.989591e-01	k: 6899	n:10000
PEX12   10000 perm   1 sec   (7022 perm/sec)   p_kst 6.899000e-01   p_cons 8.448000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000129/PEX12.4_1092_10000_0.6899_0.8448_1.png
                gene_name: PEX12
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 32 percent done.
PFKFB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.789393e-02	ci left: 1.585590e-01	ci right 1.732362e-01	k: 1658	n:10000
Cons ci ratio: 7.402527e-02	ci left: 2.108283e-01	ci right 2.271357e-01	k: 2189	n:10000
KS ci ratio: 1.036150e-01	ci left: 1.186757e-01	ci right 1.317435e-01	k: 1251	n:10000
PFKFB1   10000 perm   2 sec   (6580 perm/sec)   p_kst 1.251000e-01   p_cons 2.189000e-01   p_joint 1.658000e-01

Joint ci ratio: 8.103225e-02	ci left: 1.004895e-01	ci right 1.090258e-01	k: 2094	n:20000
Cons ci ratio: 5.213105e-02	ci left: 2.146216e-01	ci right 2.261598e-01	k: 4407	n:20000
KS ci ratio: 7.493679e-02	ci left: 1.158219e-01	ci right 1.248888e-01	k: 2406	n:20000
PFKFB1   20000 perm   3 sec   (5879 perm/sec)   p_kst 1.203000e-01   p_cons 2.203500e-01   p_joint 1.047000e-01

Outputting figure to mutsig2_images.part000000000129/PFKFB1.4_1472_20000_0.1203_0.22035_0.1047.png
                gene_name: PFKFB1
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 35 percent done.
PGAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.222691e-01	ci left: 8.747398e-02	ci right 9.896426e-02	k: 931	n:10000
Cons ci ratio: 3.176417e-01	ci left: 1.261754e-02	ci right 1.747097e-02	k: 149	n:10000
KS ci ratio: 2.937187e-02	ci left: 6.309046e-01	ci right 6.498135e-01	k: 6404	n:10000
PGAP1   10000 perm   2 sec   (6226 perm/sec)   p_kst 6.404000e-01   p_cons 1.490000e-02   p_joint 9.310000e-02

Joint ci ratio: 9.371018e-02	ci left: 7.666776e-02	ci right 8.425474e-02	k: 1608	n:20000
Cons ci ratio: 2.219971e-01	ci left: 1.364464e-02	ci right 1.709835e-02	k: 306	n:20000
KS ci ratio: 2.029882e-02	ci left: 6.442470e-01	ci right 6.575091e-01	k: 13018	n:20000
PGAP1   20000 perm   4 sec   (5644 perm/sec)   p_kst 6.509000e-01   p_cons 1.530000e-02   p_joint 8.040000e-02

Joint ci ratio: 6.295851e-02	ci left: 1.108190e-01	ci right 1.180559e-01	k: 3432	n:30000
Cons ci ratio: 1.815619e-01	ci left: 1.390964e-02	ci right 1.671870e-02	k: 458	n:30000
KS ci ratio: 1.651220e-02	ci left: 6.471808e-01	ci right 6.579897e-01	k: 19578	n:30000
PGAP1   30000 perm   6 sec   (5404 perm/sec)   p_kst 6.526000e-01   p_cons 1.526667e-02   p_joint 1.144000e-01

Joint ci ratio: 8.097071e-02	ci left: 5.310447e-02	ci right 5.761035e-02	k: 2213	n:40000
Cons ci ratio: 1.678608e-01	ci left: 1.232011e-02	ci right 1.460133e-02	k: 537	n:40000
KS ci ratio: 1.431270e-02	ci left: 6.475092e-01	ci right 6.568687e-01	k: 26088	n:40000
PGAP1   40000 perm   8 sec   (5247 perm/sec)   p_kst 6.522000e-01   p_cons 1.342500e-02   p_joint 5.532500e-02

Joint ci ratio: 7.256841e-02	ci left: 5.313552e-02	ci right 5.715632e-02	k: 2756	n:50000
Cons ci ratio: 1.492980e-01	ci left: 1.258383e-02	ci right 1.463321e-02	k: 679	n:50000
KS ci ratio: 1.276844e-02	ci left: 6.491899e-01	ci right 6.575523e-01	k: 32669	n:50000
PGAP1   50000 perm   10 sec   (5111 perm/sec)   p_kst 6.533800e-01   p_cons 1.358000e-02   p_joint 5.512000e-02

Joint ci ratio: 7.345272e-02	ci left: 4.364969e-02	ci right 4.699447e-02	k: 2718	n:60000
Cons ci ratio: 1.364596e-01	ci left: 1.264017e-02	ci right 1.450732e-02	k: 813	n:60000
KS ci ratio: 1.170181e-02	ci left: 6.477720e-01	ci right 6.554134e-01	k: 39096	n:60000
PGAP1   60000 perm   12 sec   (5005 perm/sec)   p_kst 6.516000e-01   p_cons 1.355000e-02   p_joint 4.530000e-02

Joint ci ratio: 6.606567e-02	ci left: 4.630150e-02	ci right 4.947897e-02	k: 3351	n:70000
Cons ci ratio: 1.271312e-01	ci left: 1.254747e-02	ci right 1.426465e-02	k: 937	n:70000
KS ci ratio: 1.082459e-02	ci left: 6.484436e-01	ci right 6.555152e-01	k: 45639	n:70000
PGAP1   70000 perm   14 sec   (4902 perm/sec)   p_kst 6.519857e-01   p_cons 1.338571e-02   p_joint 4.787143e-02

Joint ci ratio: 6.162043e-02	ci left: 4.666435e-02	ci right 4.964353e-02	k: 3851	n:80000
Cons ci ratio: 1.190895e-01	ci left: 1.256615e-02	ci right 1.416943e-02	k: 1068	n:80000
KS ci ratio: 1.011904e-02	ci left: 6.489631e-01	ci right 6.555759e-01	k: 52182	n:80000
PGAP1   80000 perm   17 sec   (4808 perm/sec)   p_kst 6.522750e-01   p_cons 1.335000e-02   p_joint 4.813750e-02

Joint ci ratio: 5.859164e-02	ci left: 4.598792e-02	ci right 4.877468e-02	k: 4263	n:90000
Cons ci ratio: 1.123557e-01	ci left: 1.259415e-02	ci right 1.410412e-02	k: 1200	n:90000
KS ci ratio: 9.563884e-03	ci left: 6.480314e-01	ci right 6.542700e-01	k: 58604	n:90000
PGAP1   90000 perm   20 sec   (4610 perm/sec)   p_kst 6.511556e-01   p_cons 1.333333e-02   p_joint 4.736667e-02

Joint ci ratio: 5.915136e-02	ci left: 4.082421e-02	ci right 4.332244e-02	k: 4206	n:100000
Cons ci ratio: 1.064464e-01	ci left: 1.266729e-02	ci right 1.410114e-02	k: 1337	n:100000
KS ci ratio: 9.064431e-03	ci left: 6.486275e-01	ci right 6.545437e-01	k: 65159	n:100000
PGAP1   100000 perm   22 sec   (4529 perm/sec)   p_kst 6.515900e-01   p_cons 1.337000e-02   p_joint 4.206000e-02

Joint ci ratio: 5.343858e-02	ci left: 4.538874e-02	ci right 4.788978e-02	k: 5129	n:110000
Cons ci ratio: 1.007939e-01	ci left: 1.287952e-02	ci right 1.425540e-02	k: 1491	n:110000
KS ci ratio: 8.632897e-03	ci left: 6.492767e-01	ci right 6.549152e-01	k: 71731	n:110000
PGAP1   110000 perm   25 sec   (4455 perm/sec)   p_kst 6.521000e-01   p_cons 1.355455e-02   p_joint 4.662727e-02

Joint ci ratio: 5.120851e-02	ci left: 4.536483e-02	ci right 4.775714e-02	k: 5586	n:120000
Cons ci ratio: 9.652198e-02	ci left: 1.290348e-02	ci right 1.422018e-02	k: 1626	n:120000
KS ci ratio: 8.271751e-03	ci left: 6.490467e-01	ci right 6.544460e-01	k: 78210	n:120000
PGAP1   120000 perm   27 sec   (4385 perm/sec)   p_kst 6.517500e-01   p_cons 1.355000e-02   p_joint 4.655000e-02

Outputting figure to mutsig2_images.part000000000129/PGAP1.4_2877_120000_0.65175_0.01355_0.04655.png
                gene_name: PGAP1
               theta_stop: 0.097 
                    nperm: 120000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.014 
      ci_cons_bounds_left: 0.013 
     ci_cons_bounds_right: 0.014 
                  p_joint: 0.047 
     ci_joint_bounds_left: 0.045 
    ci_joint_bounds_right: 0.048 

Current progress: 38 percent done.
PGK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.124631e-02	ci left: 2.816139e-01	ci right 2.995082e-01	k: 2905	n:10000
Cons ci ratio: 4.739627e-02	ci left: 3.964531e-01	ci right 4.158017e-01	k: 4061	n:10000
KS ci ratio: 6.353627e-02	ci left: 2.668589e-01	ci right 2.844719e-01	k: 2756	n:10000
PGK2   10000 perm   2 sec   (6441 perm/sec)   p_kst 2.756000e-01   p_cons 4.061000e-01   p_joint 2.905000e-01

Outputting figure to mutsig2_images.part000000000129/PGK2.4_1258_10000_0.2756_0.4061_0.2905.png
                gene_name: PGK2
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 41 percent done.
PELI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.683115e-02	ci left: 4.022303e-01	ci right 4.216210e-01	k: 4119	n:10000
KS ci ratio: 2.185325e-02	ci left: 7.544383e-01	ci right 7.712083e-01	k: 7629	n:10000
PELI1   10000 perm   1 sec   (6975 perm/sec)   p_kst 7.629000e-01   p_cons 4.119000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000129/PELI1.3_1281_10000_0.7629_0.4119_1.png
                gene_name: PELI1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 43 percent done.
PELI2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.021250e-02	ci left: 6.177371e-01	ci right 6.367887e-01	k: 6273	n:10000
KS ci ratio: 2.642698e-02	ci left: 6.783117e-01	ci right 6.965790e-01	k: 6875	n:10000
PELI2   10000 perm   2 sec   (6624 perm/sec)   p_kst 6.875000e-01   p_cons 6.273000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000129/PELI2.3_1287_10000_0.6875_0.6273_1.png
                gene_name: PELI2
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 46 percent done.
PGC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.049003e-02	ci left: 2.278041e-01	ci right 2.445498e-01	k: 2361	n:10000
Cons ci ratio: 4.358455e-02	ci left: 4.373218e-01	ci right 4.569090e-01	k: 4471	n:10000
KS ci ratio: 1.023114e-01	ci left: 1.214132e-01	ci right 1.346043e-01	k: 1279	n:10000
PGC   10000 perm   1 sec   (6970 perm/sec)   p_kst 1.279000e-01   p_cons 4.471000e-01   p_joint 2.361000e-01

Joint ci ratio: 5.241330e-02	ci left: 2.127893e-01	ci right 2.242927e-01	k: 4370	n:20000
Cons ci ratio: 2.981616e-02	ci left: 4.566196e-01	ci right 4.704910e-01	k: 9271	n:20000
KS ci ratio: 7.303500e-02	ci left: 1.212829e-01	ci right 1.305262e-01	k: 2517	n:20000
PGC   20000 perm   3 sec   (6182 perm/sec)   p_kst 1.258500e-01   p_cons 4.635500e-01   p_joint 2.185000e-01

Outputting figure to mutsig2_images.part000000000129/PGC.3_1512_20000_0.12585_0.46355_0.2185.png
                gene_name: PGC
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 49 percent done.
PELI3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.032345e-02	ci left: 2.878562e-01	ci right 3.058623e-01	k: 2968	n:10000
KS ci ratio: 1.891855e-02	ci left: 8.032880e-01	ci right 8.187304e-01	k: 8111	n:10000
PELI3   10000 perm   1 sec   (7199 perm/sec)   p_kst 8.111000e-01   p_cons 2.968000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000129/PELI3.2_1438_10000_0.8111_0.2968_1.png
                gene_name: PELI3
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 51 percent done.
PEPD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.038389e-02	ci left: 9.294731e-01	ci right 9.392720e-01	k: 9345	n:10000
Cons ci ratio: 1.716091e-02	ci left: 8.318516e-01	ci right 8.463503e-01	k: 8392	n:10000
KS ci ratio: 1.605409e-02	ci left: 8.493730e-01	ci right 8.632188e-01	k: 8564	n:10000
PEPD   10000 perm   1 sec   (7130 perm/sec)   p_kst 8.564000e-01   p_cons 8.392000e-01   p_joint 9.345000e-01

Outputting figure to mutsig2_images.part000000000129/PEPD.2_1542_10000_0.8564_0.8392_0.9345.png
                gene_name: PEPD
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 54 percent done.
PER2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.630636e-02	ci left: 5.283689e-01	ci right 5.480089e-01	k: 5382	n:10000
Cons ci ratio: 3.582708e-02	ci left: 5.349777e-01	ci right 5.545962e-01	k: 5448	n:10000
KS ci ratio: 4.702498e-02	ci left: 4.002380e-01	ci right 4.196145e-01	k: 4099	n:10000
PER2   10000 perm   2 sec   (6023 perm/sec)   p_kst 4.099000e-01   p_cons 5.448000e-01   p_joint 5.382000e-01

Outputting figure to mutsig2_images.part000000000129/PER2.2_3856_10000_0.4099_0.5448_0.5382.png
                gene_name: PER2
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 57 percent done.
PER3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.147127e-02	ci left: 3.575431e-01	ci right 3.765344e-01	k: 3670	n:10000
Cons ci ratio: 3.624069e-02	ci left: 5.292700e-01	ci right 5.489072e-01	k: 5391	n:10000
KS ci ratio: 9.703224e-02	ci left: 1.334506e-01	ci right 1.471597e-01	k: 1402	n:10000
PER3   10000 perm   2 sec   (6336 perm/sec)   p_kst 1.402000e-01   p_cons 5.391000e-01   p_joint 3.670000e-01

Outputting figure to mutsig2_images.part000000000129/PER3.2_3690_10000_0.1402_0.5391_0.367.png
                gene_name: PER3
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 59 percent done.
PES1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.273648e-03	ci left: 9.630998e-01	ci right 9.702249e-01	k: 9668	n:10000
Cons ci ratio: 1.781042e-01	ci left: 4.207265e-02	ci right 5.039427e-02	k: 461	n:10000
KS ci ratio: 3.184346e-02	ci left: 5.927292e-01	ci right 6.120111e-01	k: 6024	n:10000
PES1   10000 perm   1 sec   (6892 perm/sec)   p_kst 6.024000e-01   p_cons 4.610000e-02   p_joint 9.668000e-01

Joint ci ratio: 1.236693e-02	ci left: 8.287699e-01	ci right 8.391329e-01	k: 16680	n:20000
Cons ci ratio: 1.273200e-01	ci left: 4.236218e-02	ci right 4.817095e-02	k: 904	n:20000
KS ci ratio: 2.258144e-02	ci left: 5.942242e-01	ci right 6.078464e-01	k: 12021	n:20000
PES1   20000 perm   3 sec   (6051 perm/sec)   p_kst 6.010500e-01   p_cons 4.520000e-02   p_joint 8.340000e-01

Joint ci ratio: 2.697077e-02	ci left: 4.075867e-01	ci right 4.187635e-01	k: 12395	n:30000
Cons ci ratio: 1.039772e-01	ci left: 4.287669e-02	ci right 4.761189e-02	k: 1356	n:30000
KS ci ratio: 1.845530e-02	ci left: 5.950316e-01	ci right 6.061489e-01	k: 18018	n:30000
PES1   30000 perm   5 sec   (5673 perm/sec)   p_kst 6.006000e-01   p_cons 4.520000e-02   p_joint 4.131667e-01

Joint ci ratio: 2.171042e-02	ci left: 4.441420e-01	ci right 4.539154e-01	k: 17961	n:40000
Cons ci ratio: 9.026519e-02	ci left: 4.298905e-02	ci right 4.707733e-02	k: 1800	n:40000
KS ci ratio: 1.601874e-02	ci left: 5.947036e-01	ci right 6.043320e-01	k: 23981	n:40000
PES1   40000 perm   7 sec   (5503 perm/sec)   p_kst 5.995250e-01   p_cons 4.500000e-02   p_joint 4.490250e-01

Outputting figure to mutsig2_images.part000000000129/PES1.2_1827_40000_0.59952_0.045_0.44903.png
                gene_name: PES1
               theta_stop: 0.090 
                    nperm: 40000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.045 
      ci_cons_bounds_left: 0.043 
     ci_cons_bounds_right: 0.047 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.45 

Current progress: 62 percent done.
PEX13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.980742e-02	ci left: 3.728605e-01	ci right 3.920080e-01	k: 3824	n:10000
KS ci ratio: 8.605580e-03	ci left: 9.498142e-01	ci right 9.581188e-01	k: 9541	n:10000
PEX13   10000 perm   1 sec   (7213 perm/sec)   p_kst 9.541000e-01   p_cons 3.824000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000129/PEX13.2_1228_10000_0.9541_0.3824_1.png
                gene_name: PEX13
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
PEX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.182535e-01	ci left: 9.311639e-02	ci right 1.049184e-01	k: 989	n:10000
Cons ci ratio: 1.153651e-01	ci left: 9.749841e-02	ci right 1.095337e-01	k: 1034	n:10000
KS ci ratio: 9.588261e-02	ci left: 1.362914e-01	ci right 1.501172e-01	k: 1431	n:10000
PEX2   10000 perm   1 sec   (7357 perm/sec)   p_kst 1.431000e-01   p_cons 1.034000e-01   p_joint 9.890000e-02

Joint ci ratio: 7.026779e-02	ci left: 1.298983e-01	ci right 1.394082e-01	k: 2692	n:20000
Cons ci ratio: 8.131434e-02	ci left: 9.985126e-02	ci right 1.083642e-01	k: 2081	n:20000
KS ci ratio: 6.814789e-02	ci left: 1.370912e-01	ci right 1.468131e-01	k: 2838	n:20000
PEX2   20000 perm   3 sec   (6189 perm/sec)   p_kst 1.419000e-01   p_cons 1.040500e-01   p_joint 1.346000e-01

Outputting figure to mutsig2_images.part000000000129/PEX2.2_922_20000_0.1419_0.10405_0.1346.png
                gene_name: PEX2
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.100 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 68 percent done.
PEX26
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.439016e-02	ci left: 2.616134e-01	ci right 2.791206e-01	k: 2703	n:10000
Cons ci ratio: 6.728524e-02	ci left: 2.447989e-01	ci right 2.619450e-01	k: 2533	n:10000
KS ci ratio: 2.631022e-02	ci left: 6.802263e-01	ci right 6.984633e-01	k: 6894	n:10000
PEX26   10000 perm   1 sec   (7290 perm/sec)   p_kst 6.894000e-01   p_cons 2.533000e-01   p_joint 2.703000e-01

Outputting figure to mutsig2_images.part000000000129/PEX26.2_938_10000_0.6894_0.2533_0.2703.png
                gene_name: PEX26
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 70 percent done.
PEX5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.428590e-02	ci left: 2.096447e-01	ci right 2.259200e-01	k: 2177	n:10000
KS ci ratio: 2.326536e-02	ci left: 7.307786e-01	ci right 7.480817e-01	k: 7395	n:10000
PEX5   10000 perm   1 sec   (6831 perm/sec)   p_kst 7.395000e-01   p_cons 2.177000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000129/PEX5.2_2025_10000_0.7395_0.2177_1.png
                gene_name: PEX5
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
PEX6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.102190e-02	ci left: 9.215196e-01	ci right 9.318302e-01	k: 9268	n:10000
Cons ci ratio: 1.116726e-02	ci left: 9.196628e-01	ci right 9.300880e-01	k: 9250	n:10000
KS ci ratio: 1.842942e-02	ci left: 8.113112e-01	ci right 8.265025e-01	k: 8190	n:10000
PEX6   10000 perm   2 sec   (6269 perm/sec)   p_kst 8.190000e-01   p_cons 9.250000e-01   p_joint 9.268000e-01

Outputting figure to mutsig2_images.part000000000129/PEX6.2_3011_10000_0.819_0.925_0.9268.png
                gene_name: PEX6
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 76 percent done.
PEX7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.033941e-02	ci left: 4.757596e-01	ci right 4.954488e-01	k: 4856	n:10000
Cons ci ratio: 1.118333e-02	ci left: 9.194566e-01	ci right 9.298944e-01	k: 9248	n:10000
KS ci ratio: 5.160444e-02	ci left: 3.563500e-01	ci right 3.753282e-01	k: 3658	n:10000
PEX7   10000 perm   1 sec   (7323 perm/sec)   p_kst 3.658000e-01   p_cons 9.248000e-01   p_joint 4.856000e-01

Outputting figure to mutsig2_images.part000000000129/PEX7.2_1012_10000_0.3658_0.9248_0.4856.png
                gene_name: PEX7
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 78 percent done.
PFKL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.910019e-02	ci left: 4.913511e-01	ci right 5.110482e-01	k: 5012	n:10000
Cons ci ratio: 2.118569e-01	ci left: 2.958536e-02	ci right 3.669001e-02	k: 330	n:10000
KS ci ratio: 5.048895e-02	ci left: 3.664936e-01	ci right 3.855787e-01	k: 3760	n:10000
PFKL   10000 perm   1 sec   (6673 perm/sec)   p_kst 3.760000e-01   p_cons 3.300000e-02   p_joint 5.012000e-01

Joint ci ratio: 8.032737e-02	ci left: 1.021099e-01	ci right 1.107049e-01	k: 2127	n:20000
Cons ci ratio: 1.470737e-01	ci left: 3.177235e-02	ci right 3.686421e-02	k: 685	n:20000
KS ci ratio: 3.581910e-02	ci left: 3.677860e-01	ci right 3.812505e-01	k: 7490	n:20000
PFKL   20000 perm   3 sec   (5952 perm/sec)   p_kst 3.745000e-01   p_cons 3.425000e-02   p_joint 1.063500e-01

Joint ci ratio: 5.248895e-02	ci left: 1.526362e-01	ci right 1.608971e-01	k: 4702	n:30000
Cons ci ratio: 1.188361e-01	ci left: 3.291646e-02	ci right 3.710754e-02	k: 1049	n:30000
KS ci ratio: 2.908141e-02	ci left: 3.716776e-01	ci right 3.826796e-01	k: 11315	n:30000
PFKL   30000 perm   5 sec   (5645 perm/sec)   p_kst 3.771667e-01   p_cons 3.496667e-02   p_joint 1.567333e-01

Joint ci ratio: 4.440605e-02	ci left: 1.594171e-01	ci right 1.666819e-01	k: 6521	n:40000
Cons ci ratio: 1.017537e-01	ci left: 3.395177e-02	ci right 3.761602e-02	k: 1430	n:40000
KS ci ratio: 2.510767e-02	ci left: 3.738681e-01	ci right 3.833995e-01	k: 15145	n:40000
PFKL   40000 perm   7 sec   (5432 perm/sec)   p_kst 3.786250e-01   p_cons 3.575000e-02   p_joint 1.630250e-01

Joint ci ratio: 3.961214e-02	ci left: 1.605259e-01	ci right 1.670331e-01	k: 8188	n:50000
Cons ci ratio: 9.082082e-02	ci left: 3.428630e-02	ci right 3.756786e-02	k: 1795	n:50000
KS ci ratio: 2.245840e-02	ci left: 3.743457e-01	ci right 3.828684e-01	k: 18930	n:50000
PFKL   50000 perm   9 sec   (5280 perm/sec)   p_kst 3.786000e-01   p_cons 3.590000e-02   p_joint 1.637600e-01

Outputting figure to mutsig2_images.part000000000129/PFKL.2_2431_50000_0.3786_0.0359_0.16376.png
                gene_name: PFKL
               theta_stop: 0.091 
                    nperm: 50000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.036 
      ci_cons_bounds_left: 0.034 
     ci_cons_bounds_right: 0.038 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 81 percent done.
PFKP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.288838e-02	ci left: 8.965182e-01	ci right 9.082462e-01	k: 9025	n:10000
KS ci ratio: 1.787402e-02	ci left: 8.203566e-01	ci right 8.352519e-01	k: 8279	n:10000
PFKP   10000 perm   1 sec   (6680 perm/sec)   p_kst 8.279000e-01   p_cons 9.025000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000129/PFKP.2_2443_10000_0.8279_0.9025_1.png
                gene_name: PFKP
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
PGBD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.167093e-02	ci left: 5.953393e-01	ci right 6.145996e-01	k: 6050	n:10000
Cons ci ratio: 2.611998e-02	ci left: 6.833505e-01	ci right 7.015373e-01	k: 6925	n:10000
KS ci ratio: 3.320349e-02	ci left: 5.724607e-01	ci right 5.918914e-01	k: 5822	n:10000
PGBD1   10000 perm   1 sec   (6727 perm/sec)   p_kst 5.822000e-01   p_cons 6.925000e-01   p_joint 6.050000e-01

Outputting figure to mutsig2_images.part000000000129/PGBD1.2_2454_10000_0.5822_0.6925_0.605.png
                gene_name: PGBD1
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.61 

Current progress: 86 percent done.
PGBD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.204869e-02	ci left: 4.550858e-01	ci right 4.747347e-01	k: 4649	n:10000
KS ci ratio: 3.958604e-03	ci left: 9.878505e-01	ci right 9.918564e-01	k: 9900	n:10000
PGBD2   10000 perm   2 sec   (6354 perm/sec)   p_kst 9.900000e-01   p_cons 4.649000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000129/PGBD2.2_1787_10000_0.99_0.4649_1.png
                gene_name: PGBD2
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.47 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
PGBD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.466872e-02	ci left: 2.599312e-01	ci right 2.774037e-01	k: 2686	n:10000
Cons ci ratio: 4.156183e-02	ci left: 4.608768e-01	ci right 4.805403e-01	k: 4707	n:10000
KS ci ratio: 2.903464e-01	ci left: 1.529963e-02	ci right 2.058652e-02	k: 178	n:10000
PGBD4   10000 perm   1 sec   (7039 perm/sec)   p_kst 1.780000e-02   p_cons 4.707000e-01   p_joint 2.686000e-01

Joint ci ratio: 6.378337e-02	ci left: 1.537595e-01	ci right 1.639399e-01	k: 3176	n:20000
Cons ci ratio: 2.925866e-02	ci left: 4.660100e-01	ci right 4.798979e-01	k: 9459	n:20000
KS ci ratio: 1.999736e-01	ci left: 1.696289e-02	ci right 2.077881e-02	k: 376	n:20000
PGBD4   20000 perm   3 sec   (6077 perm/sec)   p_kst 1.880000e-02   p_cons 4.729500e-01   p_joint 1.588000e-01

Joint ci ratio: 4.189107e-02	ci left: 2.211781e-01	ci right 2.306751e-01	k: 6777	n:30000
Cons ci ratio: 2.396624e-02	ci left: 4.657044e-01	ci right 4.770345e-01	k: 14141	n:30000
KS ci ratio: 1.614696e-01	ci left: 1.770919e-02	ci right 2.085155e-02	k: 577	n:30000
PGBD4   30000 perm   5 sec   (5762 perm/sec)   p_kst 1.923333e-02   p_cons 4.713667e-01   p_joint 2.259000e-01

Joint ci ratio: 3.950866e-02	ci left: 1.935833e-01	ci right 2.014106e-01	k: 7899	n:40000
Cons ci ratio: 2.079178e-02	ci left: 4.655984e-01	ci right 4.754059e-01	k: 18820	n:40000
KS ci ratio: 1.379036e-01	ci left: 1.843305e-02	ci right 2.118728e-02	k: 791	n:40000
PGBD4   40000 perm   7 sec   (5598 perm/sec)   p_kst 1.977500e-02   p_cons 4.705000e-01   p_joint 1.974750e-01

Joint ci ratio: 3.230963e-02	ci left: 2.237518e-01	ci right 2.311199e-01	k: 11371	n:50000
Cons ci ratio: 1.723818e-02	ci left: 5.040076e-01	ci right 5.127914e-01	k: 25420	n:50000
KS ci ratio: 1.227769e-01	ci left: 1.875200e-02	ci right 2.122417e-02	k: 998	n:50000
PGBD4   50000 perm   9 sec   (5459 perm/sec)   p_kst 1.996000e-02   p_cons 5.084000e-01   p_joint 2.274200e-01

Joint ci ratio: 2.974347e-02	ci left: 2.211498e-01	ci right 2.278435e-01	k: 13469	n:60000
Cons ci ratio: 1.576467e-02	ci left: 5.034911e-01	ci right 5.115082e-01	k: 30450	n:60000
KS ci ratio: 1.114082e-01	ci left: 1.908923e-02	ci right 2.135751e-02	k: 1212	n:60000
PGBD4   60000 perm   11 sec   (5331 perm/sec)   p_kst 2.020000e-02   p_cons 5.075000e-01   p_joint 2.244833e-01

Joint ci ratio: 2.268534e-02	ci left: 2.956097e-01	ci right 3.024069e-01	k: 20930	n:70000
Cons ci ratio: 1.462578e-02	ci left: 5.027461e-01	ci right 5.101676e-01	k: 35452	n:70000
KS ci ratio: 1.024505e-01	ci left: 1.943518e-02	ci right 2.154768e-02	k: 1433	n:70000
PGBD4   70000 perm   13 sec   (5219 perm/sec)   p_kst 2.047143e-02   p_cons 5.064571e-01   p_joint 2.990000e-01

Joint ci ratio: 1.856763e-02	ci left: 3.544648e-01	ci right 3.611205e-01	k: 28623	n:80000
Cons ci ratio: 1.366191e-02	ci left: 5.036916e-01	ci right 5.106328e-01	k: 40573	n:80000
KS ci ratio: 9.618956e-02	ci left: 1.935835e-02	ci right 2.132665e-02	k: 1626	n:80000
PGBD4   80000 perm   16 sec   (5115 perm/sec)   p_kst 2.032500e-02   p_cons 5.071625e-01   p_joint 3.577875e-01

Outputting figure to mutsig2_images.part000000000129/PGBD4.2_1762_80000_0.020325_0.50716_0.35779.png
                gene_name: PGBD4
               theta_stop: 0.096 
                    nperm: 80000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.021 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 92 percent done.
PGK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.318628e-02	ci left: 8.923120e-01	ci right 9.042548e-01	k: 8984	n:10000
Cons ci ratio: 2.623040e-02	ci left: 6.815364e-01	ci right 6.997525e-01	k: 6907	n:10000
KS ci ratio: 2.874988e-02	ci left: 6.407601e-01	ci right 6.595523e-01	k: 6502	n:10000
PGK1   10000 perm   1 sec   (7191 perm/sec)   p_kst 6.502000e-01   p_cons 6.907000e-01   p_joint 8.984000e-01

Outputting figure to mutsig2_images.part000000000129/PGK1.2_1298_10000_0.6502_0.6907_0.8984.png
                gene_name: PGK1
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 95 percent done.
PGLYRP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.162458e-02	ci left: 5.960420e-01	ci right 6.152964e-01	k: 6057	n:10000
Cons ci ratio: 4.354932e-02	ci left: 4.377208e-01	ci right 4.573098e-01	k: 4475	n:10000
KS ci ratio: 1.184452e-02	ci left: 9.108030e-01	ci right 9.217531e-01	k: 9164	n:10000
PGLYRP2   10000 perm   1 sec   (7033 perm/sec)   p_kst 9.164000e-01   p_cons 4.475000e-01   p_joint 6.057000e-01

Outputting figure to mutsig2_images.part000000000129/PGLYRP2.2_1751_10000_0.9164_0.4475_0.6057.png
                gene_name: PGLYRP2
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 97 percent done.
PGLYRP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.255939e-02	ci left: 5.819908e-01	ci right 6.013557e-01	k: 5917	n:10000
Cons ci ratio: 1.340890e-02	ci left: 8.891337e-01	ci right 9.012350e-01	k: 8953	n:10000
KS ci ratio: 7.702838e-02	ci left: 1.977156e-01	ci right 2.136562e-01	k: 2056	n:10000
PGLYRP4   10000 perm   1 sec   (7364 perm/sec)   p_kst 2.056000e-01   p_cons 8.953000e-01   p_joint 5.917000e-01

Outputting figure to mutsig2_images.part000000000129/PGLYRP4.2_1154_10000_0.2056_0.8953_0.5917.png
                gene_name: PGLYRP4
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000129
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 129 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1714>
Subject: Job 8004392: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1714>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000130> was used as the working directory.
Started at Sun Nov 11 15:12:23 2012
Results reported at Sun Nov 11 15:20:38 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000130.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000130.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 130  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000130.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    537.21 sec.
    Max Memory :      4758 MB
    Max Swap   :      7065 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
130
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 130
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 130: processing genes 11672 - 11761
Calculating significance of each gene.
Using projection method.
11672	PGM2	3.683214e-01
11673	PGM2L1	8.067264e-01
11674	PGM3	1
11675	PGM5	1.164978e-01
11676	PGP	1
11677	PGPEP1	6.074690e-01
11678	PGPEP1L	1
11679	PGR	9.448238e-01
11680	PGRMC1	1.081012e-01
11681	PGRMC2	1
11682	PGS1	6.094111e-01
11683	PHACTR1	2.830821e-02
11684	PHACTR2	5.130458e-01
11685	PHACTR3	1.160317e-01
11686	PHACTR4	8.208909e-01
11687	PHAX	5.138732e-01
11688	PHB	3.013657e-01
11689	PHB2	1
11690	PHC1	1
11691	PHC2	8.001190e-01
11692	PHC3	3.510242e-02
11693	PHEX	5.411475e-02
11694	PHF1	7.800575e-01
11695	PHF10	1
11696	PHF11	4.448732e-01
11697	PHF12	9.557078e-01
11698	PHF13	6.694186e-01
11699	PHF14	5.965815e-01
11700	PHF15	9.307161e-01
11701	PHF16	2.589541e-01
11702	PHF17	8.747279e-01
11703	PHF19	5.035173e-01
11704	PHF2	5.164612e-01
11705	PHF20	1
11706	PHF20L1	1.558831e-01
11707	PHF21A	7.568587e-01
11708	PHF21B	5.459256e-01
11709	PHF23	6.090589e-01
11710	PHF3	5.777575e-01
11711	PHF5A	1
11712	PHF6	4.484820e-01
11713	PHF7	1
11714	PHF8	7.620234e-01
11715	PHGDH	5.402487e-01
11716	PHIP	4.663278e-01
11717	PHKA1	3.507935e-01
11718	PHKA2	7.117672e-01
11719	PHKB	9.008884e-01
11720	PHKG1	3.645395e-01
11721	PHKG2	6.775086e-01
11722	PHLDA1	1
11723	PHLDA2	1
11724	PHLDA3	1
11725	PHLDB1	1
11726	PHLDB2	9.764314e-01
11727	PHLDB3	2.362382e-01
11728	PHLPP1	5.555556e-01
11729	PHLPP2	9.462012e-01
11730	PHOSPHO1	1
11731	PHOSPHO2	3.719301e-01
11732	PHOX2B	4.977157e-01
11733	PHPT1	1
11734	PHRF1	8.320604e-01
11735	PHTF1	3.353931e-01
11736	PHTF2	5.866045e-01
11737	PHYH	4.363316e-02
11738	PHYHD1	1
11739	PHYHIP	6.354995e-01
11740	PHYHIPL	1
11741	PI15	1
11742	PI16	1.316248e-02
11743	PI3	3.900185e-01
11744	PI4K2A	6.780791e-01
11745	PI4K2B	5.630318e-01
11746	PI4KA	9.950883e-01
11747	PI4KB	9.645854e-01
11748	PIAS1	1.129081e-01
11749	PIAS2	5.811351e-01
11750	PIAS3	6.703268e-01
11751	PIAS4	4.063900e-01
11752	PIBF1	1
11753	PICALM	6.088032e-01
11754	PICK1	6.706221e-01
11755	PID1	1
11756	PIF1	7.123853e-01
11757	PIGA	1
11758	PIGB	6.648817e-01
11759	PIGC	1
11760	PIGF	3.184260e-01
11761	PIGG	9.490755e-01
Done

Running MutSig 2:
Scatter job 130: processing genes 11672 - 11761
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
PHACTR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.967221e-02	ci left: 6.261796e-01	ci right 6.451413e-01	k: 6357	n:10000
Cons ci ratio: 1.942301e-02	ci left: 7.949654e-01	ci right 8.106578e-01	k: 8029	n:10000
KS ci ratio: 4.171224e-02	ci left: 4.590794e-01	ci right 4.787387e-01	k: 4689	n:10000
PHACTR3   10000 perm   2 sec   (5248 perm/sec)   p_kst 4.689000e-01   p_cons 8.029000e-01   p_joint 6.357000e-01

Outputting figure to mutsig2_images.part000000000130/PHACTR3.10_1732_10000_0.4689_0.8029_0.6357.png
                gene_name: PHACTR3
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 2 percent done.
PHF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.051078e-01	ci left: 1.156461e-01	ci right 1.285750e-01	k: 1220	n:10000
Cons ci ratio: 1.381978e-02	ci left: 8.831915e-01	ci right 8.955806e-01	k: 8895	n:10000
KS ci ratio: 1.579714e-01	ci left: 5.340171e-02	ci right 6.265786e-02	k: 579	n:10000
PHF3   10000 perm   2 sec   (4379 perm/sec)   p_kst 5.790000e-02   p_cons 8.895000e-01   p_joint 1.220000e-01

Joint ci ratio: 7.115585e-02	ci left: 1.270421e-01	ci right 1.364652e-01	k: 2634	n:20000
Cons ci ratio: 9.931601e-03	ci left: 8.817684e-01	ci right 8.906190e-01	k: 17725	n:20000
KS ci ratio: 1.120129e-01	ci left: 5.445922e-02	ci right 6.097011e-02	k: 1153	n:20000
PHF3   20000 perm   5 sec   (3993 perm/sec)   p_kst 5.765000e-02   p_cons 8.862500e-01   p_joint 1.317000e-01

Joint ci ratio: 6.421136e-02	ci left: 1.069407e-01	ci right 1.140683e-01	k: 3314	n:30000
Cons ci ratio: 8.034232e-03	ci left: 8.844784e-01	ci right 8.916462e-01	k: 26643	n:30000
KS ci ratio: 9.222460e-02	ci left: 5.417457e-02	ci right 5.944500e-02	k: 1703	n:30000
PHF3   30000 perm   8 sec   (3857 perm/sec)   p_kst 5.676667e-02   p_cons 8.881000e-01   p_joint 1.104667e-01

Outputting figure to mutsig2_images.part000000000130/PHF3.10_6180_30000_0.056767_0.8881_0.11047.png
                gene_name: PHF3
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.057 
        ci_ks_bounds_left: 0.054 
       ci_ks_bounds_right: 0.059 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 4 percent done.
PHIP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.018666e-02	ci left: 6.181391e-01	ci right 6.371865e-01	k: 6277	n:10000
KS ci ratio: 1.554170e-02	ci left: 8.573295e-01	ci right 8.708576e-01	k: 8642	n:10000
PHIP   10000 perm   2 sec   (4538 perm/sec)   p_kst 8.642000e-01   p_cons 6.277000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000130/PHIP.9_5626_10000_0.8642_0.6277_1.png
                gene_name: PHIP
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 6 percent done.
PHC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.860295e-02	ci left: 4.977503e-01	ci right 5.174453e-01	k: 5076	n:10000
Cons ci ratio: 6.728524e-02	ci left: 2.447989e-01	ci right 2.619450e-01	k: 2533	n:10000
KS ci ratio: 2.565491e-02	ci left: 6.910118e-01	ci right 7.090715e-01	k: 7001	n:10000
PHC3   10000 perm   2 sec   (4360 perm/sec)   p_kst 7.001000e-01   p_cons 2.533000e-01   p_joint 5.076000e-01

Outputting figure to mutsig2_images.part000000000130/PHC3.8_3048_10000_0.7001_0.2533_0.5076.png
                gene_name: PHC3
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 8 percent done.
PHEX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.751552e-02	ci left: 8.261534e-01	ci right 8.408517e-01	k: 8336	n:10000
Cons ci ratio: 4.579340e-02	ci left: 4.130914e-01	ci right 4.325536e-01	k: 4228	n:10000
KS ci ratio: 2.665473e-02	ci left: 6.745838e-01	ci right 6.929091e-01	k: 6838	n:10000
PHEX   10000 perm   2 sec   (5432 perm/sec)   p_kst 6.838000e-01   p_cons 4.228000e-01   p_joint 8.336000e-01

Outputting figure to mutsig2_images.part000000000130/PHEX.7_2338_10000_0.6838_0.4228_0.8336.png
                gene_name: PHEX
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 9 percent done.
PHF20L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.989034e-02	ci left: 6.227620e-01	ci right 6.417609e-01	k: 6323	n:10000
KS ci ratio: 2.015643e-02	ci left: 7.827953e-01	ci right 7.988349e-01	k: 7909	n:10000
PHF20L1   10000 perm   2 sec   (4774 perm/sec)   p_kst 7.909000e-01   p_cons 6.323000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000130/PHF20L1.7_3230_10000_0.7909_0.6323_1.png
                gene_name: PHF20L1
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 11 percent done.
PHLDB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.373633e-01	ci left: 7.010558e-02	ci right 8.054343e-02	k: 752	n:10000
Cons ci ratio: 5.752610e-02	ci left: 3.078845e-01	ci right 3.262222e-01	k: 3170	n:10000
KS ci ratio: 2.019685e-01	ci left: 3.262466e-02	ci right 4.004861e-02	k: 362	n:10000
PHLDB2   10000 perm   2 sec   (4585 perm/sec)   p_kst 3.620000e-02   p_cons 3.170000e-01   p_joint 7.520000e-02

Joint ci ratio: 1.020536e-01	ci left: 6.518352e-02	ci right 7.224249e-02	k: 1373	n:20000
Cons ci ratio: 4.070066e-02	ci left: 3.103544e-01	ci right 3.232989e-01	k: 6336	n:20000
KS ci ratio: 1.469628e-01	ci left: 3.182056e-02	ci right 3.691598e-02	k: 686	n:20000
PHLDB2   20000 perm   5 sec   (4182 perm/sec)   p_kst 3.430000e-02   p_cons 3.168000e-01   p_joint 6.865000e-02

Joint ci ratio: 9.411313e-02	ci left: 5.208821e-02	ci right 5.726512e-02	k: 1639	n:30000
Cons ci ratio: 3.325117e-02	ci left: 3.113045e-01	ci right 3.218643e-01	k: 9497	n:30000
KS ci ratio: 1.194267e-01	ci left: 3.259274e-02	ci right 3.676467e-02	k: 1039	n:30000
PHLDB2   30000 perm   7 sec   (4027 perm/sec)   p_kst 3.463333e-02   p_cons 3.165667e-01   p_joint 5.463333e-02

Joint ci ratio: 8.336955e-02	ci left: 5.018733e-02	ci right 5.457794e-02	k: 2094	n:40000
Cons ci ratio: 2.943742e-02	ci left: 3.026060e-01	ci right 3.116721e-01	k: 12285	n:40000
KS ci ratio: 1.033369e-01	ci left: 3.292779e-02	ci right 3.654016e-02	k: 1388	n:40000
PHLDB2   40000 perm   10 sec   (3919 perm/sec)   p_kst 3.470000e-02   p_cons 3.071250e-01   p_joint 5.235000e-02

Joint ci ratio: 7.466977e-02	ci left: 5.028604e-02	ci right 5.420615e-02	k: 2611	n:50000
Cons ci ratio: 2.625375e-02	ci left: 3.043133e-01	ci right 3.124290e-01	k: 15418	n:50000
KS ci ratio: 9.221455e-02	ci left: 3.326929e-02	ci right 3.650500e-02	k: 1743	n:50000
PHLDB2   50000 perm   13 sec   (3841 perm/sec)   p_kst 3.486000e-02   p_cons 3.083600e-01   p_joint 5.222000e-02

Outputting figure to mutsig2_images.part000000000130/PHLDB2.7_3915_50000_0.03486_0.30836_0.05222.png
                gene_name: PHLDB2
               theta_stop: 0.092 
                    nperm: 50000 
                     p_ks: 0.035 
        ci_ks_bounds_left: 0.033 
       ci_ks_bounds_right: 0.037 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.052 
     ci_joint_bounds_left: 0.050 
    ci_joint_bounds_right: 0.054 

Current progress: 13 percent done.
PI4KA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.466463e-02	ci left: 3.302166e-01	ci right 3.488769e-01	k: 3395	n:10000
Cons ci ratio: 3.241139e-02	ci left: 5.841983e-01	ci right 6.035469e-01	k: 5939	n:10000
KS ci ratio: 7.717009e-02	ci left: 1.971244e-01	ci right 2.130478e-01	k: 2050	n:10000
PI4KA   10000 perm   2 sec   (4373 perm/sec)   p_kst 2.050000e-01   p_cons 5.939000e-01   p_joint 3.395000e-01

Outputting figure to mutsig2_images.part000000000130/PI4KA.7_6351_10000_0.205_0.5939_0.3395.png
                gene_name: PI4KA
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 15 percent done.
PHACTR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.445463e-02	ci left: 5.543135e-01	ci right 5.738491e-01	k: 5641	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
PHACTR1   10000 perm   2 sec   (5823 perm/sec)   p_kst 1   p_cons 5.641000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000130/PHACTR1.6_1795_10000_1_0.5641_1.png
                gene_name: PHACTR1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 17 percent done.
PHF16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.658335e-02	ci left: 3.150282e-01	ci right 3.334743e-01	k: 3242	n:10000
Cons ci ratio: 7.483523e-02	ci left: 2.071791e-01	ci right 2.233870e-01	k: 2152	n:10000
KS ci ratio: 5.857854e-02	ci left: 3.001484e-01	ci right 3.183629e-01	k: 3092	n:10000
PHF16   10000 perm   2 sec   (5866 perm/sec)   p_kst 3.092000e-01   p_cons 2.152000e-01   p_joint 3.242000e-01

Outputting figure to mutsig2_images.part000000000130/PHF16.6_2512_10000_0.3092_0.2152_0.3242.png
                gene_name: PHF16
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 19 percent done.
PHKA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.202230e-02	ci left: 7.516055e-01	ci right 7.684428e-01	k: 7601	n:10000
KS ci ratio: 6.590188e-03	ci left: 9.692095e-01	ci right 9.757113e-01	k: 9726	n:10000
PHKA1   10000 perm   2 sec   (4956 perm/sec)   p_kst 9.726000e-01   p_cons 7.601000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000130/PHKA1.6_3800_10000_0.9726_0.7601_1.png
                gene_name: PHKA1
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 21 percent done.
PHKB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.070444e-02	ci left: 4.712639e-01	ci right 4.909471e-01	k: 4811	n:10000
Cons ci ratio: 1.966194e-02	ci left: 7.910089e-01	ci right 8.068166e-01	k: 7990	n:10000
KS ci ratio: 6.721419e-02	ci left: 2.451943e-01	ci right 2.623493e-01	k: 2537	n:10000
PHKB   10000 perm   2 sec   (4941 perm/sec)   p_kst 2.537000e-01   p_cons 7.990000e-01   p_joint 4.811000e-01

Outputting figure to mutsig2_images.part000000000130/PHKB.6_3560_10000_0.2537_0.799_0.4811.png
                gene_name: PHKB
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 23 percent done.
PI16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.689486e-01	ci left: 1.799971e-02	ci right 2.368423e-02	k: 207	n:10000
Cons ci ratio: 1.879096e-01	ci left: 3.777051e-02	ci right 4.569926e-02	k: 416	n:10000
KS ci ratio: 1.232929e-01	ci left: 8.611301e-02	ci right 9.752607e-02	k: 917	n:10000
PI16   10000 perm   2 sec   (5916 perm/sec)   p_kst 9.170000e-02   p_cons 4.160000e-02   p_joint 2.070000e-02

Joint ci ratio: 1.355252e-01	ci left: 3.742298e-02	ci right 4.291173e-02	k: 802	n:20000
Cons ci ratio: 1.295086e-01	ci left: 4.095680e-02	ci right 4.667678e-02	k: 875	n:20000
KS ci ratio: 8.854373e-02	ci left: 8.528465e-02	ci right 9.323524e-02	k: 1784	n:20000
PI16   20000 perm   4 sec   (5302 perm/sec)   p_kst 8.920000e-02   p_cons 4.375000e-02   p_joint 4.010000e-02

Joint ci ratio: 1.424101e-01	ci left: 2.287663e-02	ci right 2.641625e-02	k: 738	n:30000
Cons ci ratio: 1.045026e-01	ci left: 4.245416e-02	ci right 4.716783e-02	k: 1343	n:30000
KS ci ratio: 7.105733e-02	ci left: 8.881797e-02	ci right 9.539460e-02	k: 2762	n:30000
PI16   30000 perm   6 sec   (5061 perm/sec)   p_kst 9.206667e-02   p_cons 4.476667e-02   p_joint 2.460000e-02

Joint ci ratio: 1.601873e-01	ci left: 1.356744e-02	ci right 1.595376e-02	k: 589	n:40000
Cons ci ratio: 9.157743e-02	ci left: 4.179070e-02	ci right 4.582587e-02	k: 1751	n:40000
KS ci ratio: 6.132702e-02	ci left: 8.982577e-02	ci right 9.553352e-02	k: 3706	n:40000
PI16   40000 perm   8 sec   (4899 perm/sec)   p_kst 9.265000e-02   p_cons 4.377500e-02   p_joint 1.472500e-02

Joint ci ratio: 1.361866e-01	ci left: 1.518891e-02	ci right 1.742776e-02	k: 814	n:50000
Cons ci ratio: 8.502225e-02	ci left: 3.904353e-02	ci right 4.253005e-02	k: 2038	n:50000
KS ci ratio: 5.483799e-02	ci left: 9.017168e-02	ci right 9.527572e-02	k: 4635	n:50000
PI16   50000 perm   11 sec   (4757 perm/sec)   p_kst 9.270000e-02   p_cons 4.076000e-02   p_joint 1.628000e-02

Joint ci ratio: 1.063301e-01	ci left: 2.097100e-02	ci right 2.334220e-02	k: 1328	n:60000
Cons ci ratio: 7.769394e-02	ci left: 3.911651e-02	ci right 4.229478e-02	k: 2441	n:60000
KS ci ratio: 5.001154e-02	ci left: 9.055566e-02	ci right 9.521714e-02	k: 5572	n:60000
PI16   60000 perm   13 sec   (4643 perm/sec)   p_kst 9.286667e-02   p_cons 4.068333e-02   p_joint 2.213333e-02

Joint ci ratio: 8.391895e-02	ci left: 2.895858e-02	ci right 3.150913e-02	k: 2115	n:70000
Cons ci ratio: 7.197020e-02	ci left: 3.919199e-02	ci right 4.213195e-02	k: 2845	n:70000
KS ci ratio: 4.685122e-02	ci left: 8.878030e-02	ci right 9.305368e-02	k: 6363	n:70000
PI16   70000 perm   15 sec   (4540 perm/sec)   p_kst 9.090000e-02   p_cons 4.064286e-02   p_joint 3.021429e-02

Outputting figure to mutsig2_images.part000000000130/PI16.6_1416_70000_0.0909_0.040643_0.030214.png
                gene_name: PI16
               theta_stop: 0.084 
                    nperm: 70000 
                     p_ks: 0.091 
        ci_ks_bounds_left: 0.089 
       ci_ks_bounds_right: 0.093 
                   p_cons: 0.041 
      ci_cons_bounds_left: 0.039 
     ci_cons_bounds_right: 0.042 
                  p_joint: 0.030 
     ci_joint_bounds_left: 0.029 
    ci_joint_bounds_right: 0.032 

Current progress: 25 percent done.
PHLPP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.056825e-02	ci left: 2.274091e-01	ci right 2.441451e-01	k: 2357	n:10000
Cons ci ratio: 7.966982e-02	ci left: 1.870774e-01	ci right 2.027008e-01	k: 1948	n:10000
KS ci ratio: 9.166397e-02	ci left: 1.474675e-01	ci right 1.617343e-01	k: 1545	n:10000
PHLPP1   10000 perm   2 sec   (4490 perm/sec)   p_kst 1.545000e-01   p_cons 1.948000e-01   p_joint 2.357000e-01

Outputting figure to mutsig2_images.part000000000130/PHLPP1.5_5222_10000_0.1545_0.1948_0.2357.png
                gene_name: PHLPP1
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 26 percent done.
PHRF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.231453e-01	ci left: 8.630741e-02	ci right 9.773155e-02	k: 919	n:10000
Cons ci ratio: 1.775008e-01	ci left: 4.235985e-02	ci right 5.070688e-02	k: 464	n:10000
KS ci ratio: 4.642761e-02	ci left: 4.064147e-01	ci right 4.258341e-01	k: 4161	n:10000
PHRF1   10000 perm   2 sec   (4594 perm/sec)   p_kst 4.161000e-01   p_cons 4.640000e-02   p_joint 9.190000e-02

Joint ci ratio: 8.953869e-02	ci left: 8.352110e-02	ci right 9.139931e-02	k: 1748	n:20000
Cons ci ratio: 1.233734e-01	ci left: 4.507829e-02	ci right 5.105398e-02	k: 960	n:20000
KS ci ratio: 3.248348e-02	ci left: 4.144437e-01	ci right 4.281792e-01	k: 8426	n:20000
PHRF1   20000 perm   5 sec   (4189 perm/sec)   p_kst 4.213000e-01   p_cons 4.800000e-02   p_joint 8.740000e-02

Joint ci ratio: 8.414083e-02	ci left: 6.462097e-02	ci right 7.032981e-02	k: 2023	n:30000
Cons ci ratio: 1.009741e-01	ci left: 4.541306e-02	ci right 5.027498e-02	k: 1434	n:30000
KS ci ratio: 2.653615e-02	ci left: 4.154709e-01	ci right 4.266777e-01	k: 12632	n:30000
PHRF1   30000 perm   7 sec   (4056 perm/sec)   p_kst 4.210667e-01   p_cons 4.780000e-02   p_joint 6.743333e-02

Joint ci ratio: 6.289138e-02	ci left: 8.573409e-02	ci right 9.132581e-02	k: 3540	n:40000
Cons ci ratio: 9.076769e-02	ci left: 4.252433e-02	ci right 4.659212e-02	k: 1781	n:40000
KS ci ratio: 2.291859e-02	ci left: 4.175527e-01	ci right 4.272585e-01	k: 16896	n:40000
PHRF1   40000 perm   10 sec   (3966 perm/sec)   p_kst 4.224000e-01   p_cons 4.452500e-02   p_joint 8.850000e-02

Outputting figure to mutsig2_images.part000000000130/PHRF1.5_5015_40000_0.4224_0.044525_0.0885.png
                gene_name: PHRF1
               theta_stop: 0.091 
                    nperm: 40000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.045 
      ci_cons_bounds_left: 0.043 
     ci_cons_bounds_right: 0.047 
                  p_joint: 0.088 
     ci_joint_bounds_left: 0.086 
    ci_joint_bounds_right: 0.091 

Current progress: 28 percent done.
PIAS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.906036e-02	ci left: 8.009530e-01	ci right 8.164667e-01	k: 8088	n:10000
KS ci ratio: 2.392992e-02	ci left: 7.196677e-01	ci right 7.371991e-01	k: 7285	n:10000
PIAS1   10000 perm   2 sec   (5659 perm/sec)   p_kst 7.285000e-01   p_cons 8.088000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000130/PIAS1.5_2012_10000_0.7285_0.8088_1.png
                gene_name: PIAS1
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 30 percent done.
PGM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.538035e-02	ci left: 6.955495e-01	ci right 7.135312e-01	k: 7046	n:10000
KS ci ratio: 1.561441e-02	ci left: 8.562070e-01	ci right 8.697808e-01	k: 8631	n:10000
PGM2   10000 perm   2 sec   (5683 perm/sec)   p_kst 8.631000e-01   p_cons 7.046000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000130/PGM2.4_1895_10000_0.8631_0.7046_1.png
                gene_name: PGM2
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 32 percent done.
PGM5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.062909e-02	ci left: 3.652005e-01	ci right 3.842725e-01	k: 3747	n:10000
Cons ci ratio: 3.602976e-02	ci left: 5.321738e-01	ci right 5.518018e-01	k: 5420	n:10000
KS ci ratio: 7.270890e-02	ci left: 2.169452e-01	ci right 2.334152e-01	k: 2251	n:10000
PGM5   10000 perm   2 sec   (6180 perm/sec)   p_kst 2.251000e-01   p_cons 5.420000e-01   p_joint 3.747000e-01

Outputting figure to mutsig2_images.part000000000130/PGM5.4_1748_10000_0.2251_0.542_0.3747.png
                gene_name: PGM5
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.38 

Current progress: 34 percent done.
PGR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.598329e-02	ci left: 2.021508e-01	ci right 2.182184e-01	k: 2101	n:10000
Cons ci ratio: 1.712220e-01	ci left: 4.552219e-02	ci right 5.414247e-02	k: 497	n:10000
KS ci ratio: 2.270415e-02	ci left: 7.401779e-01	ci right 7.572770e-01	k: 7488	n:10000
PGR   10000 perm   2 sec   (5711 perm/sec)   p_kst 7.488000e-01   p_cons 4.970000e-02   p_joint 2.101000e-01

Joint ci ratio: 5.608573e-02	ci left: 1.907652e-01	ci right 2.018232e-01	k: 3925	n:20000
Cons ci ratio: 1.168165e-01	ci left: 5.017833e-02	ci right 5.645233e-02	k: 1065	n:20000
KS ci ratio: 1.602453e-02	ci left: 7.434339e-01	ci right 7.554935e-01	k: 14990	n:20000
PGR   20000 perm   4 sec   (5143 perm/sec)   p_kst 7.495000e-01   p_cons 5.325000e-02   p_joint 1.962500e-01

Joint ci ratio: 4.445946e-02	ci left: 2.012041e-01	ci right 2.103863e-01	k: 6173	n:30000
Cons ci ratio: 9.475660e-02	ci left: 5.140387e-02	ci right 5.654961e-02	k: 1618	n:30000
KS ci ratio: 1.316066e-02	ci left: 7.423421e-01	ci right 7.522100e-01	k: 22419	n:30000
PGR   30000 perm   6 sec   (4912 perm/sec)   p_kst 7.473000e-01   p_cons 5.393333e-02   p_joint 2.057667e-01

Outputting figure to mutsig2_images.part000000000130/PGR.4_2834_30000_0.7473_0.053933_0.20577.png
                gene_name: PGR
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.054 
      ci_cons_bounds_left: 0.051 
     ci_cons_bounds_right: 0.057 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 36 percent done.
PHF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.862839e-01	ci left: 3.843896e-02	ci right 4.643037e-02	k: 423	n:10000
Cons ci ratio: 9.829904e-02	ci left: 1.304150e-01	ci right 1.439971e-01	k: 1371	n:10000
KS ci ratio: 1.777013e-01	ci left: 4.226411e-02	ci right 5.060268e-02	k: 463	n:10000
PHF2   10000 perm   2 sec   (5281 perm/sec)   p_kst 4.630000e-02   p_cons 1.371000e-01   p_joint 4.230000e-02

Joint ci ratio: 2.201831e-01	ci left: 1.388097e-02	ci right 1.736192e-02	k: 311	n:20000
Cons ci ratio: 6.939191e-02	ci left: 1.328045e-01	ci right 1.424011e-01	k: 2751	n:20000
KS ci ratio: 1.258701e-01	ci left: 4.333189e-02	ci right 4.920094e-02	k: 924	n:20000
PHF2   20000 perm   4 sec   (4752 perm/sec)   p_kst 4.620000e-02   p_cons 1.375500e-01   p_joint 1.555000e-02

Joint ci ratio: 1.398132e-01	ci left: 2.374559e-02	ci right 2.734709e-02	k: 765	n:30000
Cons ci ratio: 5.718168e-02	ci left: 1.315470e-01	ci right 1.393237e-01	k: 4062	n:30000
KS ci ratio: 1.035781e-01	ci left: 4.320175e-02	ci right 4.795342e-02	k: 1366	n:30000
PHF2   30000 perm   7 sec   (4548 perm/sec)   p_kst 4.553333e-02   p_cons 1.354000e-01   p_joint 2.550000e-02

Joint ci ratio: 9.010813e-02	ci left: 4.313582e-02	ci right 4.723054e-02	k: 1806	n:40000
Cons ci ratio: 5.100863e-02	ci left: 1.253587e-01	ci right 1.319453e-01	k: 5145	n:40000
KS ci ratio: 8.946190e-02	ci left: 4.374741e-02	ci right 4.786886e-02	k: 1831	n:40000
PHF2   40000 perm   9 sec   (4417 perm/sec)   p_kst 4.577500e-02   p_cons 1.286250e-01   p_joint 4.515000e-02

Outputting figure to mutsig2_images.part000000000130/PHF2.4_3379_40000_0.045775_0.12862_0.04515.png
                gene_name: PHF2
               theta_stop: 0.090 
                    nperm: 40000 
                     p_ks: 0.046 
        ci_ks_bounds_left: 0.044 
       ci_ks_bounds_right: 0.048 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.045 
     ci_joint_bounds_left: 0.043 
    ci_joint_bounds_right: 0.047 

Current progress: 38 percent done.
PHKA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.906185e-02	ci left: 2.966780e-01	ci right 3.148353e-01	k: 3057	n:10000
KS ci ratio: 3.064686e-02	ci left: 6.110055e-01	ci right 6.301242e-01	k: 6206	n:10000
PHKA2   10000 perm   2 sec   (5064 perm/sec)   p_kst 6.206000e-01   p_cons 3.057000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000130/PHKA2.4_3840_10000_0.6206_0.3057_1.png
                gene_name: PHKA2
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 40 percent done.
PHTF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.367889e-02	ci left: 8.852399e-01	ci right 8.975311e-01	k: 8915	n:10000
Cons ci ratio: 3.866476e-02	ci left: 4.969503e-01	ci right 5.166457e-01	k: 5068	n:10000
KS ci ratio: 1.526261e-02	ci left: 8.616169e-01	ci right 8.749678e-01	k: 8684	n:10000
PHTF1   10000 perm   2 sec   (5476 perm/sec)   p_kst 8.684000e-01   p_cons 5.068000e-01   p_joint 8.915000e-01

Outputting figure to mutsig2_images.part000000000130/PHTF1.4_2361_10000_0.8684_0.5068_0.8915.png
                gene_name: PHTF1
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 42 percent done.
PHYH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.711277e-02	ci left: 1.332547e-01	ci right 1.469557e-01	k: 1400	n:10000
Cons ci ratio: 1.024770e-02	ci left: 9.311281e-01	ci right 9.408160e-01	k: 9361	n:10000
KS ci ratio: 1.685670e-01	ci left: 4.696137e-02	ci right 5.570235e-02	k: 512	n:10000
PHYH   10000 perm   2 sec   (6379 perm/sec)   p_kst 5.120000e-02   p_cons 9.361000e-01   p_joint 1.400000e-01

Joint ci ratio: 7.640568e-02	ci left: 1.118388e-01	ci right 1.207730e-01	k: 2325	n:20000
Cons ci ratio: 7.244127e-03	ci left: 9.326216e-01	ci right 9.394510e-01	k: 18722	n:20000
KS ci ratio: 1.170486e-01	ci left: 4.998388e-02	ci right 5.624684e-02	k: 1061	n:20000
PHYH   20000 perm   4 sec   (5680 perm/sec)   p_kst 5.305000e-02   p_cons 9.361000e-01   p_joint 1.162500e-01

Joint ci ratio: 7.843007e-02	ci left: 7.384403e-02	ci right 7.990488e-02	k: 2305	n:30000
Cons ci ratio: 5.853057e-03	ci left: 9.345315e-01	ci right 9.400501e-01	k: 28120	n:30000
KS ci ratio: 9.624228e-02	ci left: 4.987266e-02	ci right 5.494779e-02	k: 1571	n:30000
PHYH   30000 perm   6 sec   (5405 perm/sec)   p_kst 5.236667e-02   p_cons 9.373333e-01   p_joint 7.683333e-02

Outputting figure to mutsig2_images.part000000000130/PHYH.4_1053_30000_0.052367_0.93733_0.076833.png
                gene_name: PHYH
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.052 
        ci_ks_bounds_left: 0.050 
       ci_ks_bounds_right: 0.055 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.077 
     ci_joint_bounds_left: 0.074 
    ci_joint_bounds_right: 0.080 

Current progress: 43 percent done.
PIBF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.405475e-02	ci left: 4.320349e-01	ci right 4.515990e-01	k: 4418	n:10000
Cons ci ratio: 1.790536e-02	ci left: 8.198482e-01	ci right 8.347606e-01	k: 8274	n:10000
KS ci ratio: 6.594306e-02	ci left: 2.524128e-01	ci right 2.697266e-01	k: 2610	n:10000
PIBF1   10000 perm   2 sec   (5790 perm/sec)   p_kst 2.610000e-01   p_cons 8.274000e-01   p_joint 4.418000e-01

Outputting figure to mutsig2_images.part000000000130/PIBF1.4_2342_10000_0.261_0.8274_0.4418.png
                gene_name: PIBF1
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 45 percent done.
PICALM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.328380e-01	ci left: 7.475563e-02	ci right 8.549047e-02	k: 800	n:10000
Cons ci ratio: 3.044550e-02	ci left: 6.141199e-01	ci right 6.332080e-01	k: 6237	n:10000
KS ci ratio: 1.950999e-01	ci left: 3.500453e-02	ci right 4.266711e-02	k: 387	n:10000
PICALM   10000 perm   2 sec   (5566 perm/sec)   p_kst 3.870000e-02   p_cons 6.237000e-01   p_joint 8.000000e-02

Joint ci ratio: 1.089881e-01	ci left: 5.742979e-02	ci right 6.409861e-02	k: 1214	n:20000
Cons ci ratio: 2.170850e-02	ci left: 6.130303e-01	ci right 6.265349e-01	k: 12396	n:20000
KS ci ratio: 1.355252e-01	ci left: 3.742298e-02	ci right 4.291173e-02	k: 802	n:20000
PICALM   20000 perm   4 sec   (5023 perm/sec)   p_kst 4.010000e-02   p_cons 6.198000e-01   p_joint 6.070000e-02

Joint ci ratio: 9.254171e-02	ci left: 5.381590e-02	ci right 5.907041e-02	k: 1692	n:30000
Cons ci ratio: 1.773022e-02	ci left: 6.141451e-01	ci right 6.251650e-01	k: 18590	n:30000
KS ci ratio: 1.102994e-01	ci left: 3.816745e-02	ci right 4.265545e-02	k: 1211	n:30000
PICALM   30000 perm   6 sec   (4828 perm/sec)   p_kst 4.036667e-02   p_cons 6.196667e-01   p_joint 5.640000e-02

Joint ci ratio: 7.250410e-02	ci left: 6.562559e-02	ci right 7.058733e-02	k: 2723	n:40000
Cons ci ratio: 1.533026e-02	ci left: 6.156482e-01	ci right 6.251843e-01	k: 24817	n:40000
KS ci ratio: 9.614415e-02	ci left: 3.797848e-02	ci right 4.183868e-02	k: 1595	n:40000
PICALM   40000 perm   9 sec   (4690 perm/sec)   p_kst 3.987500e-02   p_cons 6.204250e-01   p_joint 6.807500e-02

Outputting figure to mutsig2_images.part000000000130/PICALM.4_2067_40000_0.039875_0.62043_0.068075.png
                gene_name: PICALM
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.040 
        ci_ks_bounds_left: 0.038 
       ci_ks_bounds_right: 0.042 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.068 
     ci_joint_bounds_left: 0.066 
    ci_joint_bounds_right: 0.071 

Current progress: 47 percent done.
PIGG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.221033e-02	ci left: 3.509817e-01	ci right 3.698997e-01	k: 3604	n:10000
KS ci ratio: 2.299376e-02	ci left: 7.353260e-01	ci right 7.525317e-01	k: 7440	n:10000
PIGG   10000 perm   2 sec   (5393 perm/sec)   p_kst 7.440000e-01   p_cons 3.604000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000130/PIGG.4_3004_10000_0.744_0.3604_1.png
                gene_name: PIGG
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 49 percent done.
PGM2L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.902339e-02	ci left: 8.015621e-01	ci right 8.170573e-01	k: 8094	n:10000
Cons ci ratio: 3.282282e-02	ci left: 5.780780e-01	ci right 5.974708e-01	k: 5878	n:10000
KS ci ratio: 3.662888e-02	ci left: 5.239639e-01	ci right 5.436164e-01	k: 5338	n:10000
PGM2L1   10000 perm   2 sec   (5425 perm/sec)   p_kst 5.338000e-01   p_cons 5.878000e-01   p_joint 8.094000e-01

Outputting figure to mutsig2_images.part000000000130/PGM2L1.3_1925_10000_0.5338_0.5878_0.8094.png
                gene_name: PGM2L1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 51 percent done.
PHACTR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.267260e-02	ci left: 2.723040e-01	ci right 2.900236e-01	k: 2811	n:10000
Cons ci ratio: 8.197598e-02	ci left: 1.784159e-01	ci right 1.937674e-01	k: 1860	n:10000
KS ci ratio: 1.891238e-02	ci left: 8.033895e-01	ci right 8.188289e-01	k: 8112	n:10000
PHACTR2   10000 perm   2 sec   (5901 perm/sec)   p_kst 8.112000e-01   p_cons 1.860000e-01   p_joint 2.811000e-01

Outputting figure to mutsig2_images.part000000000130/PHACTR2.3_2007_10000_0.8112_0.186_0.2811.png
                gene_name: PHACTR2
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 53 percent done.
PHF14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.457181e-02	ci left: 7.089672e-01	ci right 7.267058e-01	k: 7179	n:10000
KS ci ratio: 1.741446e-02	ci left: 8.277812e-01	ci right 8.424231e-01	k: 8352	n:10000
PHF14   10000 perm   2 sec   (5568 perm/sec)   p_kst 8.352000e-01   p_cons 7.179000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000130/PHF14.3_2735_10000_0.8352_0.7179_1.png
                gene_name: PHF14
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 55 percent done.
PHF19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.750623e-02	ci left: 5.121545e-01	ci right 5.318327e-01	k: 5220	n:10000
Cons ci ratio: 4.363748e-02	ci left: 4.367232e-01	ci right 4.563080e-01	k: 4465	n:10000
KS ci ratio: 4.844356e-02	ci left: 3.859978e-01	ci right 4.052631e-01	k: 3956	n:10000
PHF19   10000 perm   2 sec   (6039 perm/sec)   p_kst 3.956000e-01   p_cons 4.465000e-01   p_joint 5.220000e-01

Outputting figure to mutsig2_images.part000000000130/PHF19.3_1958_10000_0.3956_0.4465_0.522.png
                gene_name: PHF19
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 57 percent done.
PHF8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.443389e-02	ci left: 3.321036e-01	ci right 3.507889e-01	k: 3414	n:10000
KS ci ratio: 2.610772e-02	ci left: 6.835521e-01	ci right 7.017356e-01	k: 6927	n:10000
PHF8   10000 perm   2 sec   (5408 perm/sec)   p_kst 6.927000e-01   p_cons 3.414000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000130/PHF8.3_3441_10000_0.6927_0.3414_1.png
                gene_name: PHF8
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 58 percent done.
PHLDB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.547790e-02	ci left: 6.939360e-01	ci right 7.119456e-01	k: 7030	n:10000
Cons ci ratio: 4.653285e-02	ci left: 4.053188e-01	ci right 4.247308e-01	k: 4150	n:10000
KS ci ratio: 3.811184e-02	ci left: 5.041511e-01	ci right 5.238407e-01	k: 5140	n:10000
PHLDB3   10000 perm   2 sec   (6015 perm/sec)   p_kst 5.140000e-01   p_cons 4.150000e-01   p_joint 7.030000e-01

Outputting figure to mutsig2_images.part000000000130/PHLDB3.3_1983_10000_0.514_0.415_0.703.png
                gene_name: PHLDB3
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 60 percent done.
PHLPP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.291219e-02	ci left: 4.450047e-01	ci right 4.646217e-01	k: 4548	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
PHLPP2   10000 perm   2 sec   (5298 perm/sec)   p_kst 1   p_cons 4.548000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000130/PHLPP2.3_4044_10000_1_0.4548_1.png
                gene_name: PHLPP2
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.46 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
PHTF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.180047e-02	ci left: 2.779488e-01	ci right 2.957755e-01	k: 2868	n:10000
Cons ci ratio: 2.195183e-01	ci left: 2.750089e-02	ci right 3.437595e-02	k: 308	n:10000
KS ci ratio: 5.682955e-02	ci left: 3.131428e-01	ci right 3.315608e-01	k: 3223	n:10000
PHTF2   10000 perm   2 sec   (6003 perm/sec)   p_kst 3.223000e-01   p_cons 3.080000e-02   p_joint 2.868000e-01

Joint ci ratio: 4.091315e-02	ci left: 3.081171e-01	ci right 3.210369e-01	k: 6291	n:20000
Cons ci ratio: 1.615388e-01	ci left: 2.628568e-02	ci right 3.095271e-02	k: 571	n:20000
KS ci ratio: 4.064432e-02	ci left: 3.109510e-01	ci right 3.239021e-01	k: 6348	n:20000
PHTF2   20000 perm   4 sec   (5356 perm/sec)   p_kst 3.174000e-01   p_cons 2.855000e-02   p_joint 3.145500e-01

Joint ci ratio: 3.762717e-02	ci left: 2.606417e-01	ci right 2.706704e-01	k: 7969	n:30000
Cons ci ratio: 1.341676e-01	ci left: 2.580763e-02	ci right 2.955126e-02	k: 829	n:30000
KS ci ratio: 3.319491e-02	ci left: 3.120345e-01	ci right 3.226009e-01	k: 9519	n:30000
PHTF2   30000 perm   6 sec   (4782 perm/sec)   p_kst 3.173000e-01   p_cons 2.763333e-02   p_joint 2.656333e-01

Joint ci ratio: 4.670734e-02	ci left: 1.462167e-01	ci right 1.532343e-01	k: 5988	n:40000
Cons ci ratio: 1.162831e-01	ci left: 2.601642e-02	ci right 2.925264e-02	k: 1104	n:40000
KS ci ratio: 2.786946e-02	ci left: 3.262887e-01	ci right 3.355358e-01	k: 13236	n:40000
PHTF2   40000 perm   9 sec   (4698 perm/sec)   p_kst 3.309000e-01   p_cons 2.760000e-02   p_joint 1.497000e-01

Joint ci ratio: 3.961214e-02	ci left: 1.605259e-01	ci right 1.670331e-01	k: 8188	n:50000
Cons ci ratio: 1.048393e-01	ci left: 2.577221e-02	ci right 2.864304e-02	k: 1359	n:50000
KS ci ratio: 2.488814e-02	ci left: 3.274733e-01	ci right 3.357462e-01	k: 16580	n:50000
PHTF2   50000 perm   11 sec   (4605 perm/sec)   p_kst 3.316000e-01   p_cons 2.718000e-02   p_joint 1.637600e-01

Joint ci ratio: 3.225536e-02	ci left: 1.943374e-01	ci right 2.007252e-01	k: 11851	n:60000
Cons ci ratio: 9.588628e-02	ci left: 2.579906e-02	ci right 2.841362e-02	k: 1625	n:60000
KS ci ratio: 2.271897e-02	ci left: 3.278495e-01	ci right 3.354001e-01	k: 19897	n:60000
PHTF2   60000 perm   13 sec   (4526 perm/sec)   p_kst 3.316167e-01   p_cons 2.708333e-02   p_joint 1.975167e-01

Outputting figure to mutsig2_images.part000000000130/PHTF2.3_2382_60000_0.33162_0.027083_0.19752.png
                gene_name: PHTF2
               theta_stop: 0.096 
                    nperm: 60000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.027 
      ci_cons_bounds_left: 0.026 
     ci_cons_bounds_right: 0.028 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 64 percent done.
PI15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.898462e-02	ci left: 3.807221e-01	ci right 3.999419e-01	k: 3903	n:10000
Cons ci ratio: 1.503491e-02	ci left: 8.650892e-01	ci right 8.782934e-01	k: 8718	n:10000
KS ci ratio: 6.039576e-02	ci left: 2.873607e-01	ci right 3.053581e-01	k: 2963	n:10000
PI15   10000 perm   1 sec   (6730 perm/sec)   p_kst 2.963000e-01   p_cons 8.718000e-01   p_joint 3.903000e-01

Outputting figure to mutsig2_images.part000000000130/PI15.3_797_10000_0.2963_0.8718_0.3903.png
                gene_name: PI15
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 66 percent done.
PIAS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.822696e-02	ci left: 1.927894e-01	ci right 2.085854e-01	k: 2006	n:10000
Cons ci ratio: 6.257972e-02	ci left: 2.728981e-01	ci right 2.906292e-01	k: 2817	n:10000
KS ci ratio: 1.035205e-01	ci left: 1.188712e-01	ci right 1.319479e-01	k: 1253	n:10000
PIAS3   10000 perm   2 sec   (6073 perm/sec)   p_kst 1.253000e-01   p_cons 2.817000e-01   p_joint 2.006000e-01

Joint ci ratio: 6.535564e-02	ci left: 1.474447e-01	ci right 1.574565e-01	k: 3048	n:20000
Cons ci ratio: 4.449251e-02	ci left: 2.733378e-01	ci right 2.858264e-01	k: 5591	n:20000
KS ci ratio: 7.418545e-02	ci left: 1.179371e-01	ci right 1.270730e-01	k: 2449	n:20000
PIAS3   20000 perm   4 sec   (5440 perm/sec)   p_kst 1.224500e-01   p_cons 2.795500e-01   p_joint 1.524000e-01

Outputting figure to mutsig2_images.part000000000130/PIAS3.3_1943_20000_0.12245_0.27955_0.1524.png
                gene_name: PIAS3
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 68 percent done.
PGRMC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.183513e-02	ci left: 7.547419e-01	ci right 7.715046e-01	k: 7632	n:10000
KS ci ratio: 2.067928e-02	ci left: 7.740800e-01	ci right 7.903553e-01	k: 7823	n:10000
PGRMC1   10000 perm   1 sec   (7153 perm/sec)   p_kst 7.823000e-01   p_cons 7.632000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000130/PGRMC1.2_600_10000_0.7823_0.7632_1.png
                gene_name: PGRMC1
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
PGS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.573329e-02	ci left: 5.362797e-01	ci right 5.558935e-01	k: 5461	n:10000
Cons ci ratio: 4.860600e-02	ci left: 3.844050e-01	ci right 4.036568e-01	k: 3940	n:10000
KS ci ratio: 1.756598e-02	ci left: 8.253397e-01	ci right 8.400660e-01	k: 8328	n:10000
PGS1   10000 perm   2 sec   (6525 perm/sec)   p_kst 8.328000e-01   p_cons 3.940000e-01   p_joint 5.461000e-01

Outputting figure to mutsig2_images.part000000000130/PGS1.2_1707_10000_0.8328_0.394_0.5461.png
                gene_name: PGS1
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 72 percent done.
PHACTR4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.091580e-02	ci left: 7.701294e-01	ci right 7.865082e-01	k: 7784	n:10000
Cons ci ratio: 2.874356e-02	ci left: 6.408607e-01	ci right 6.596517e-01	k: 6503	n:10000
KS ci ratio: 3.998584e-02	ci left: 4.801563e-01	ci right 4.998496e-01	k: 4900	n:10000
PHACTR4   10000 perm   2 sec   (6459 perm/sec)   p_kst 4.900000e-01   p_cons 6.503000e-01   p_joint 7.784000e-01

Outputting figure to mutsig2_images.part000000000130/PHACTR4.2_2211_10000_0.49_0.6503_0.7784.png
                gene_name: PHACTR4
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 74 percent done.
PHAX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.550376e-02	ci left: 3.234649e-01	ci right 3.420327e-01	k: 3327	n:10000
Cons ci ratio: 5.743326e-02	ci left: 3.085789e-01	ci right 3.269274e-01	k: 3177	n:10000
KS ci ratio: 5.011454e-02	ci left: 3.699753e-01	ci right 3.890950e-01	k: 3795	n:10000
PHAX   10000 perm   1 sec   (6794 perm/sec)   p_kst 3.795000e-01   p_cons 3.177000e-01   p_joint 3.327000e-01

Outputting figure to mutsig2_images.part000000000130/PHAX.2_1205_10000_0.3795_0.3177_0.3327.png
                gene_name: PHAX
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 75 percent done.
PHB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.854737e-02	ci left: 8.093811e-01	ci right 8.246338e-01	k: 8171	n:10000
Cons ci ratio: 6.143997e-02	ci left: 2.803261e-01	ci right 2.981968e-01	k: 2892	n:10000
KS ci ratio: 4.352291e-02	ci left: 4.380201e-01	ci right 4.576103e-01	k: 4478	n:10000
PHB   10000 perm   1 sec   (6723 perm/sec)   p_kst 4.478000e-01   p_cons 2.892000e-01   p_joint 8.171000e-01

Outputting figure to mutsig2_images.part000000000130/PHB.2_843_10000_0.4478_0.2892_0.8171.png
                gene_name: PHB
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 77 percent done.
PHC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.184646e-02	ci left: 4.574819e-01	ci right 4.771372e-01	k: 4673	n:10000
Cons ci ratio: 5.324517e-02	ci left: 3.420374e-01	ci right 3.608492e-01	k: 3514	n:10000
KS ci ratio: 2.807057e-02	ci left: 6.516263e-01	ci right 6.702799e-01	k: 6610	n:10000
PHC2   10000 perm   2 sec   (5922 perm/sec)   p_kst 6.610000e-01   p_cons 3.514000e-01   p_joint 4.673000e-01

Outputting figure to mutsig2_images.part000000000130/PHC2.2_2633_10000_0.661_0.3514_0.4673.png
                gene_name: PHC2
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 79 percent done.
PHF12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.657045e-02	ci left: 3.151274e-01	ci right 3.335750e-01	k: 3243	n:10000
KS ci ratio: 1.401569e-02	ci left: 8.803248e-01	ci right 8.928490e-01	k: 8867	n:10000
PHF12   10000 perm   2 sec   (5762 perm/sec)   p_kst 8.867000e-01   p_cons 3.243000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000130/PHF12.2_3101_10000_0.8867_0.3243_1.png
                gene_name: PHF12
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
PHF17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.847868e-02	ci left: 6.450858e-01	ci right 6.638241e-01	k: 6545	n:10000
Cons ci ratio: 1.369703e-01	ci left: 7.049285e-02	ci right 8.095591e-02	k: 756	n:10000
KS ci ratio: 3.981027e-02	ci left: 4.823548e-01	ci right 5.020497e-01	k: 4922	n:10000
PHF17   10000 perm   2 sec   (5312 perm/sec)   p_kst 4.922000e-01   p_cons 7.560000e-02   p_joint 6.545000e-01

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 9.393256e-02	ci left: 7.632531e-02	ci right 8.389730e-02	k: 1601	n:20000
KS ci ratio: 2.840686e-02	ci left: 4.807498e-01	ci right 4.946538e-01	k: 9754	n:20000
PHF17   20000 perm   4 sec   (5016 perm/sec)   p_kst 4.877000e-01   p_cons 8.005000e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000130/PHF17.2_2596_20000_0.4877_0.08005_1.png
                gene_name: PHF17
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.080 
      ci_cons_bounds_left: 0.076 
     ci_cons_bounds_right: 0.084 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
PHF20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.553891e-02	ci left: 6.929276e-01	ci right 7.109546e-01	k: 7020	n:10000
Cons ci ratio: 3.830297e-02	ci left: 5.016506e-01	ci right 5.213427e-01	k: 5115	n:10000
KS ci ratio: 3.531729e-02	ci left: 5.420892e-01	ci right 5.616806e-01	k: 5519	n:10000
PHF20   10000 perm   2 sec   (5708 perm/sec)   p_kst 5.519000e-01   p_cons 5.115000e-01   p_joint 7.020000e-01

Outputting figure to mutsig2_images.part000000000130/PHF20.2_3107_10000_0.5519_0.5115_0.702.png
                gene_name: PHF20
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 85 percent done.
PHF21A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.814923e-02	ci left: 8.158839e-01	ci right 8.309272e-01	k: 8235	n:10000
Cons ci ratio: 2.314463e-02	ci left: 7.327995e-01	ci right 7.500596e-01	k: 7415	n:10000
KS ci ratio: 2.578935e-02	ci left: 6.887938e-01	ci right 7.068908e-01	k: 6979	n:10000
PHF21A   10000 perm   2 sec   (5841 perm/sec)   p_kst 6.979000e-01   p_cons 7.415000e-01   p_joint 8.235000e-01

Outputting figure to mutsig2_images.part000000000130/PHF21A.2_2137_10000_0.6979_0.7415_0.8235.png
                gene_name: PHF21A
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 87 percent done.
PHF21B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.366646e-01	ci left: 2.353468e-02	ci right 2.994503e-02	k: 266	n:10000
Cons ci ratio: 7.881696e-02	ci left: 1.904255e-01	ci right 2.061507e-01	k: 1982	n:10000
KS ci ratio: 2.669889e-01	ci left: 1.827990e-02	ci right 2.400381e-02	k: 210	n:10000
PHF21B   10000 perm   1 sec   (6691 perm/sec)   p_kst 2.100000e-02   p_cons 1.982000e-01   p_joint 2.660000e-02

Joint ci ratio: 2.089046e-01	ci left: 1.549097e-02	ci right 1.915129e-02	k: 345	n:20000
Cons ci ratio: 5.544514e-02	ci left: 1.943763e-01	ci right 2.055110e-01	k: 3998	n:20000
KS ci ratio: 1.925569e-01	ci left: 1.834288e-02	ci right 2.229831e-02	k: 405	n:20000
PHF21B   20000 perm   3 sec   (5914 perm/sec)   p_kst 2.025000e-02   p_cons 1.999000e-01   p_joint 1.725000e-02

Joint ci ratio: 1.034197e-01	ci left: 4.333178e-02	ci right 4.809003e-02	k: 1370	n:30000
Cons ci ratio: 4.567341e-02	ci left: 1.926113e-01	ci right 2.016474e-01	k: 5913	n:30000
KS ci ratio: 1.586925e-01	ci left: 1.834962e-02	ci right 2.154430e-02	k: 597	n:30000
PHF21B   30000 perm   5 sec   (5617 perm/sec)   p_kst 1.990000e-02   p_cons 1.971000e-01   p_joint 4.566667e-02

Joint ci ratio: 1.580264e-01	ci left: 1.395173e-02	ci right 1.636941e-02	k: 605	n:40000
Cons ci ratio: 3.981031e-02	ci left: 1.912015e-01	ci right 1.989928e-01	k: 7803	n:40000
KS ci ratio: 1.377263e-01	ci left: 1.848136e-02	ci right 2.123896e-02	k: 793	n:40000
PHF21B   40000 perm   7 sec   (5438 perm/sec)   p_kst 1.982500e-02   p_cons 1.950750e-01   p_joint 1.512500e-02

Joint ci ratio: 1.409190e-01	ci left: 1.416512e-02	ci right 1.633170e-02	k: 761	n:50000
Cons ci ratio: 3.566426e-02	ci left: 1.911179e-01	ci right 1.980776e-01	k: 9729	n:50000
KS ci ratio: 1.205190e-01	ci left: 1.946991e-02	ci right 2.198617e-02	k: 1035	n:50000
PHF21B   50000 perm   9 sec   (5292 perm/sec)   p_kst 2.070000e-02   p_cons 1.945800e-01   p_joint 1.522000e-02

Joint ci ratio: 1.294630e-01	ci left: 1.407484e-02	ci right 1.603914e-02	k: 902	n:60000
Cons ci ratio: 3.262456e-02	ci left: 1.907762e-01	ci right 1.971201e-01	k: 11636	n:60000
KS ci ratio: 1.102541e-01	ci left: 1.949457e-02	ci right 2.178546e-02	k: 1237	n:60000
PHF21B   60000 perm   12 sec   (5157 perm/sec)   p_kst 2.061667e-02   p_cons 1.939333e-01   p_joint 1.503333e-02

Joint ci ratio: 1.181352e-01	ci left: 1.457013e-02	ci right 1.641320e-02	k: 1083	n:70000
Cons ci ratio: 3.018312e-02	ci left: 1.912325e-01	ci right 1.971072e-01	k: 13591	n:70000
KS ci ratio: 1.019795e-01	ci left: 1.961624e-02	ci right 2.173804e-02	k: 1446	n:70000
PHF21B   70000 perm   14 sec   (5047 perm/sec)   p_kst 2.065714e-02   p_cons 1.941571e-01   p_joint 1.547143e-02

Joint ci ratio: 4.117286e-02	ci left: 9.967568e-02	ci right 1.038783e-01	k: 8141	n:80000
Cons ci ratio: 2.825034e-02	ci left: 1.912399e-01	ci right 1.967323e-01	k: 15518	n:80000
KS ci ratio: 9.465689e-02	ci left: 1.999315e-02	ci right 2.199180e-02	k: 1678	n:80000
PHF21B   80000 perm   16 sec   (4939 perm/sec)   p_kst 2.097500e-02   p_cons 1.939750e-01   p_joint 1.017625e-01

Outputting figure to mutsig2_images.part000000000130/PHF21B.2_1648_80000_0.020975_0.19398_0.10176.png
                gene_name: PHF21B
               theta_stop: 0.095 
                    nperm: 80000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.022 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.100 
    ci_joint_bounds_right: 0.10 

Current progress: 89 percent done.
PHF6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.336085e-02	ci left: 2.138864e-01	ci right 2.302758e-01	k: 2220	n:10000
KS ci ratio: 2.304807e-02	ci left: 7.344164e-01	ci right 7.516418e-01	k: 7431	n:10000
PHF6   10000 perm   2 sec   (6140 perm/sec)   p_kst 7.431000e-01   p_cons 2.220000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000130/PHF6.2_1239_10000_0.7431_0.222_1.png
                gene_name: PHF6
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
PHGDH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.243755e-02	ci left: 3.489937e-01	ci right 3.678888e-01	k: 3584	n:10000
Cons ci ratio: 2.318040e-01	ci left: 2.457161e-02	ci right 3.110733e-02	k: 277	n:10000
KS ci ratio: 2.507590e-02	ci left: 7.005927e-01	ci right 7.184851e-01	k: 7096	n:10000
PHGDH   10000 perm   2 sec   (6478 perm/sec)   p_kst 7.096000e-01   p_cons 2.770000e-02   p_joint 3.584000e-01

Joint ci ratio: 6.774517e-02	ci left: 1.385205e-01	ci right 1.482834e-01	k: 2867	n:20000
Cons ci ratio: 1.662350e-01	ci left: 2.479765e-02	ci right 2.934125e-02	k: 540	n:20000
KS ci ratio: 1.808296e-02	ci left: 6.950538e-01	ci right 7.077876e-01	k: 14029	n:20000
PHGDH   20000 perm   3 sec   (5745 perm/sec)   p_kst 7.014500e-01   p_cons 2.700000e-02   p_joint 1.433500e-01

Joint ci ratio: 4.683054e-02	ci left: 1.848806e-01	ci right 1.937796e-01	k: 5679	n:30000
Cons ci ratio: 1.363805e-01	ci left: 2.496955e-02	ci right 2.865619e-02	k: 803	n:30000
KS ci ratio: 1.486651e-02	ci left: 6.933383e-01	ci right 7.037565e-01	k: 20957	n:30000
PHGDH   30000 perm   5 sec   (5479 perm/sec)   p_kst 6.985667e-01   p_cons 2.676667e-02   p_joint 1.893000e-01

Joint ci ratio: 4.916116e-02	ci left: 1.337680e-01	ci right 1.405348e-01	k: 5485	n:40000
Cons ci ratio: 1.187369e-01	ci left: 2.494793e-02	ci right 2.812131e-02	k: 1060	n:40000
KS ci ratio: 1.288834e-02	ci left: 6.935994e-01	ci right 7.026218e-01	k: 27925	n:40000
PHGDH   40000 perm   8 sec   (5304 perm/sec)   p_kst 6.981250e-01   p_cons 2.650000e-02   p_joint 1.371250e-01

Joint ci ratio: 4.171169e-02	ci left: 1.469797e-01	ci right 1.532610e-01	k: 7505	n:50000
Cons ci ratio: 1.060478e-01	ci left: 2.518763e-02	ci right 2.802769e-02	k: 1329	n:50000
KS ci ratio: 1.146662e-02	ci left: 6.963231e-01	ci right 7.043736e-01	k: 35018	n:50000
PHGDH   50000 perm   10 sec   (5162 perm/sec)   p_kst 7.003600e-01   p_cons 2.658000e-02   p_joint 1.501000e-01

Joint ci ratio: 3.252404e-02	ci left: 1.917369e-01	ci right 1.980926e-01	k: 11694	n:60000
Cons ci ratio: 9.668374e-02	ci left: 2.537589e-02	ci right 2.797017e-02	k: 1599	n:60000
KS ci ratio: 1.050607e-02	ci left: 6.951279e-01	ci right 7.024862e-01	k: 41929	n:60000
PHGDH   60000 perm   12 sec   (5039 perm/sec)   p_kst 6.988167e-01   p_cons 2.665000e-02   p_joint 1.949000e-01

Outputting figure to mutsig2_images.part000000000130/PHGDH.2_1650_60000_0.69882_0.02665_0.1949.png
                gene_name: PHGDH
               theta_stop: 0.097 
                    nperm: 60000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.027 
      ci_cons_bounds_left: 0.025 
     ci_cons_bounds_right: 0.028 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 92 percent done.
PHKG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.114064e-02	ci left: 3.605262e-01	ci right 3.795496e-01	k: 3700	n:10000
Cons ci ratio: 9.302001e-02	ci left: 1.437406e-01	ci right 1.578635e-01	k: 1507	n:10000
KS ci ratio: 6.039576e-02	ci left: 2.873607e-01	ci right 3.053581e-01	k: 2963	n:10000
PHKG1   10000 perm   1 sec   (6738 perm/sec)   p_kst 2.963000e-01   p_cons 1.507000e-01   p_joint 3.700000e-01

Outputting figure to mutsig2_images.part000000000130/PHKG1.2_1200_10000_0.2963_0.1507_0.37.png
                gene_name: PHKG1
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 94 percent done.
PIAS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.782306e-02	ci left: 5.079524e-01	ci right 5.276372e-01	k: 5178	n:10000
Cons ci ratio: 8.440949e-02	ci left: 1.698592e-01	ci right 1.849292e-01	k: 1773	n:10000
KS ci ratio: 3.563971e-02	ci left: 5.375817e-01	ci right 5.571907e-01	k: 5474	n:10000
PIAS2   10000 perm   2 sec   (5471 perm/sec)   p_kst 5.474000e-01   p_cons 1.773000e-01   p_joint 5.178000e-01

Outputting figure to mutsig2_images.part000000000130/PIAS2.2_1997_10000_0.5474_0.1773_0.5178.png
                gene_name: PIAS2
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 96 percent done.
PIAS4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.892670e-02	ci left: 1.289466e-01	ci right 1.424664e-01	k: 1356	n:10000
Cons ci ratio: 8.274164e-02	ci left: 1.756613e-01	ci right 1.909236e-01	k: 1832	n:10000
KS ci ratio: 1.571106e-01	ci left: 5.397934e-02	ci right 6.327985e-02	k: 585	n:10000
PIAS4   10000 perm   2 sec   (6438 perm/sec)   p_kst 5.850000e-02   p_cons 1.832000e-01   p_joint 1.356000e-01

Joint ci ratio: 2.646704e-02	ci left: 5.160999e-01	ci right 5.299934e-01	k: 10461	n:20000
Cons ci ratio: 5.870414e-02	ci left: 1.769212e-01	ci right 1.876713e-01	k: 3645	n:20000
KS ci ratio: 1.099059e-01	ci left: 5.650427e-02	ci right 6.312442e-02	k: 1195	n:20000
PIAS4   20000 perm   3 sec   (5743 perm/sec)   p_kst 5.975000e-02   p_cons 1.822500e-01   p_joint 5.230500e-01

Joint ci ratio: 4.266846e-02	ci left: 2.148600e-01	ci right 2.242610e-01	k: 6586	n:30000
Cons ci ratio: 4.780905e-02	ci left: 1.786717e-01	ci right 1.874564e-01	k: 5491	n:30000
KS ci ratio: 9.095804e-02	ci left: 5.564217e-02	ci right 6.097710e-02	k: 1748	n:30000
PIAS4   30000 perm   5 sec   (5478 perm/sec)   p_kst 5.826667e-02   p_cons 1.830333e-01   p_joint 2.195333e-01

Outputting figure to mutsig2_images.part000000000130/PIAS4.2_1577_30000_0.058267_0.18303_0.21953.png
                gene_name: PIAS4
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.058 
        ci_ks_bounds_left: 0.056 
       ci_ks_bounds_right: 0.061 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 98 percent done.
PIF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.036773e-02	ci left: 6.153256e-01	ci right 6.344016e-01	k: 6249	n:10000
Cons ci ratio: 1.922651e-02	ci left: 7.982126e-01	ci right 8.138088e-01	k: 8061	n:10000
KS ci ratio: 5.450658e-02	ci left: 3.315077e-01	ci right 3.501851e-01	k: 3408	n:10000
PIF1   10000 perm   2 sec   (6315 perm/sec)   p_kst 3.408000e-01   p_cons 8.061000e-01   p_joint 6.249000e-01

Outputting figure to mutsig2_images.part000000000130/PIF1.2_1974_10000_0.3408_0.8061_0.6249.png
                gene_name: PIF1
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.63 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000130
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 130 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1655>
Subject: Job 8004398: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1655>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000131> was used as the working directory.
Started at Sun Nov 11 15:12:23 2012
Results reported at Sun Nov 11 18:17:10 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000131.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000131.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 131  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000131.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  11267.54 sec.
    Max Memory :      4661 MB
    Max Swap   :      7186 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
131
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 131
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 131: processing genes 11762 - 11852
Calculating significance of each gene.
Using projection method.
11762	PIGH	1.126428e-01
11763	PIGK	6.576293e-01
11764	PIGL	1.193723e-01
11765	PIGM	1
11766	PIGN	8.895246e-01
11767	PIGO	9.588918e-01
11768	PIGP	1
11769	PIGQ	8.676754e-01
11770	PIGR	9.251262e-01
11771	PIGS	1
11772	PIGT	8.771516e-01
11773	PIGU	1
11774	PIGV	1
11775	PIGW	5.816210e-01
11776	PIGX	5.540104e-01
11777	PIGY	1
11778	PIGZ	1
11779	PIH1D1	6.391343e-01
11780	PIH1D2	7.458241e-01
11781	PIK3AP1	3.664343e-02
11782	PIK3C2A	7.222728e-01
11783	PIK3C2B	6.851828e-01
11784	PIK3C2G	8.007412e-01
11785	PIK3C3	2.035465e-01
11786	PIK3CA	1.236455e-12
11787	PIK3CB	6.628801e-01
11788	PIK3CD	8.232595e-01
11789	PIK3CG	1.105777e-01
11790	PIK3IP1	1
11791	PIK3R1	8.261833e-01
11792	PIK3R2	5.306613e-01
11793	PIK3R3	4.843145e-01
11794	PIK3R4	2.897175e-01
11795	PIK3R5	1
11796	PIK3R6	5.013941e-01
11797	PIKFYVE	9.465225e-01
11798	PILRA	8.697642e-02
11799	PILRB	6.369057e-01
11800	PIM1	8.003321e-01
11801	PIM2	2.980063e-01
11802	PIM3	2.215263e-01
11803	PIN1	1
11804	PIN4	3.081424e-01
11805	PINK1	1
11806	PINX1	1
11807	PION	1
11808	PIP	1
11809	PIP4K2A	2.831193e-01
11810	PIP4K2B	3.627936e-01
11811	PIP4K2C	1.575515e-01
11812	PIP5K1A	3.746477e-01
11813	PIP5K1B	1
11814	PIP5K1C	7.206017e-01
11815	PIP5KL1	2.818053e-01
11816	PIPOX	8.593359e-01
11817	PIR	1
11818	PIRT	1
11819	PISD	6.737333e-01
11820	PITPNA	4.831404e-01
11821	PITPNB	3.747290e-01
11822	PITPNC1	6.788558e-01
11823	PITPNM1	1
11824	PITPNM2	9.276743e-01
11825	PITPNM3	1
11826	PITRM1	1
11827	PITX1	7.528171e-01
11828	PITX2	1.412578e-01
11829	PITX3	1.404424e-01
11830	PIWIL1	7.735939e-01
11831	PIWIL2	9.738354e-01
11832	PIWIL3	4.792523e-01
11833	PIWIL4	1
11834	PJA1	1
11835	PJA2	6.571872e-01
11836	PKD1	1
11837	PKD1L1	1
11838	PKD1L2	1
11839	PKD2	1.232085e-01
11840	PKD2L1	4.277445e-01
11841	PKD2L2	2.389365e-01
11842	PKDCC	1.040374e-01
11843	PKDREJ	8.414104e-01
11844	PKHD1	9.335409e-01
11845	PKHD1L1	1
11846	PKIA	1
11847	PKIB	2.798211e-01
11848	PKIG	1
11849	PKLR	8.131956e-01
11850	PKM2	4.149527e-01
11851	PKMYT1	5.955904e-01
11852	PKN1	1
Done

Running MutSig 2:
Scatter job 131: processing genes 11762 - 11852
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
PKHD1L1
Processing conservation and coverage...
76% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.538379e-02	ci left: 2.556770e-01	ci right 2.730605e-01	k: 2643	n:10000
Cons ci ratio: 4.881014e-02	ci left: 3.824141e-01	ci right 4.016488e-01	k: 3920	n:10000
KS ci ratio: 6.556918e-02	ci left: 2.545889e-01	ci right 2.719492e-01	k: 2632	n:10000
PKHD1L1   10000 perm   4 sec   (2558 perm/sec)   p_kst 2.632000e-01   p_cons 3.920000e-01   p_joint 2.643000e-01

Outputting figure to mutsig2_images.part000000000131/PKHD1L1.42_13044_10000_0.2632_0.392_0.2643.png
                gene_name: PKHD1L1
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 2 percent done.
PKHD1
Processing conservation and coverage...
79% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.851811e-02	ci left: 4.988503e-01	ci right 5.185446e-01	k: 5087	n:10000
KS ci ratio: 8.457464e-03	ci left: 9.513780e-01	ci right 9.595540e-01	k: 9556	n:10000
PKHD1   10000 perm   4 sec   (2703 perm/sec)   p_kst 9.556000e-01   p_cons 5.087000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000131/PKHD1.41_12528_10000_0.9556_0.5087_1.png
                gene_name: PKHD1
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 4 percent done.
PIK3CA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 1.238931e+00	ci left: 4.116173e-04	ci right 1.707790e-03	k: 9	n:10000
KS ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
PIK3CA   10000 perm   2 sec   (4772 perm/sec)   p_kst 1.000000e-04   p_cons 9.000000e-04   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 1.181570e+00	ci left: 2.397946e-04	ci right 9.193249e-04	k: 10	n:20000
KS ci ratio: 2.771651e+00	ci left: 1.265890e-06	ci right 2.785503e-04	k: 1	n:20000
PIK3CA   20000 perm   5 sec   (4342 perm/sec)   p_kst 5.000000e-05   p_cons 5.000000e-04   p_joint 0

Joint ci ratio: 3.919869e+00	ci left: 0	ci right 1.229551e-04	k: 0	n:30000
Cons ci ratio: 1.011870e+00	ci left: 2.551537e-04	ci right 7.828635e-04	k: 14	n:30000
KS ci ratio: 1.959837e+00	ci left: 2.062288e-05	ci right 2.922143e-04	k: 3	n:30000
PIK3CA   30000 perm   7 sec   (4174 perm/sec)   p_kst 1.000000e-04   p_cons 4.666667e-04   p_joint 0

Joint ci ratio: 3.919902e+00	ci left: 0	ci right 9.221773e-05	k: 0	n:40000
Cons ci ratio: 8.990848e-01	ci left: 2.667196e-04	ci right 7.111011e-04	k: 18	n:40000
KS ci ratio: 1.959878e+00	ci left: 1.546707e-05	ci right 2.191660e-04	k: 3	n:40000
PIK3CA   40000 perm   10 sec   (4064 perm/sec)   p_kst 7.500000e-05   p_cons 4.500000e-04   p_joint 0

Joint ci ratio: 3.919922e+00	ci left: 0	ci right 7.377487e-05	k: 0	n:50000
Cons ci ratio: 7.837961e-01	ci left: 3.075685e-04	ci right 7.141183e-04	k: 24	n:50000
KS ci ratio: 1.959902e+00	ci left: 1.237361e-05	ci right 1.753353e-04	k: 3	n:50000
PIK3CA   50000 perm   13 sec   (3975 perm/sec)   p_kst 6.000000e-05   p_cons 4.800000e-04   p_joint 0

Joint ci ratio: 3.919935e+00	ci left: 0	ci right 6.147943e-05	k: 0	n:60000
Cons ci ratio: 7.406313e-01	ci left: 2.965731e-04	ci right 6.546594e-04	k: 27	n:60000
KS ci ratio: 1.959918e+00	ci left: 1.031132e-05	ci right 1.461142e-04	k: 3	n:60000
PIK3CA   60000 perm   15 sec   (3900 perm/sec)   p_kst 5.000000e-05   p_cons 4.500000e-04   p_joint 0

Joint ci ratio: 3.919944e+00	ci left: 0	ci right 5.269689e-05	k: 0	n:70000
Cons ci ratio: 6.624305e-01	ci left: 3.363940e-04	ci right 6.786715e-04	k: 34	n:70000
KS ci ratio: 1.959930e+00	ci left: 8.838260e-06	ci right 1.252416e-04	k: 3	n:70000
PIK3CA   70000 perm   18 sec   (3829 perm/sec)   p_kst 4.285714e-05   p_cons 4.857143e-04   p_joint 0

Joint ci ratio: 3.919951e+00	ci left: 0	ci right 4.610993e-05	k: 0	n:80000
Cons ci ratio: 6.196476e-01	ci left: 3.466824e-04	ci right 6.663689e-04	k: 39	n:80000
KS ci ratio: 1.753012e+00	ci left: 1.362348e-05	ci right 1.280149e-04	k: 4	n:80000
PIK3CA   80000 perm   21 sec   (3767 perm/sec)   p_kst 5.000000e-05   p_cons 4.875000e-04   p_joint 0

Joint ci ratio: 3.919956e+00	ci left: 0	ci right 4.098671e-05	k: 0	n:90000
Cons ci ratio: 6.047246e-01	ci left: 3.269337e-04	ci right 6.179623e-04	k: 41	n:90000
KS ci ratio: 1.753019e+00	ci left: 1.210974e-05	ci right 1.137915e-04	k: 4	n:90000
PIK3CA   90000 perm   24 sec   (3708 perm/sec)   p_kst 4.444444e-05   p_cons 4.555556e-04   p_joint 0

Joint ci ratio: 3.919961e+00	ci left: 0	ci right 3.688811e-05	k: 0	n:100000
Cons ci ratio: 5.778366e-01	ci left: 3.282514e-04	ci right 6.020896e-04	k: 45	n:100000
KS ci ratio: 1.481561e+00	ci left: 2.201925e-05	ci right 1.305901e-04	k: 6	n:100000
PIK3CA   100000 perm   27 sec   (3651 perm/sec)   p_kst 6.000000e-05   p_cons 4.500000e-04   p_joint 0

Joint ci ratio: 3.919964e+00	ci left: 0	ci right 3.353471e-05	k: 0	n:110000
Cons ci ratio: 5.383212e-01	ci left: 3.530749e-04	ci right 6.198733e-04	k: 52	n:110000
KS ci ratio: 1.306607e+00	ci left: 3.139898e-05	ci right 1.432967e-04	k: 8	n:110000
PIK3CA   110000 perm   31 sec   (3596 perm/sec)   p_kst 7.272727e-05   p_cons 4.727273e-04   p_joint 0

Joint ci ratio: 3.919967e+00	ci left: 0	ci right 3.074019e-05	k: 0	n:120000
Cons ci ratio: 5.237076e-01	ci left: 3.452975e-04	ci right 5.965426e-04	k: 55	n:120000
KS ci ratio: 1.306612e+00	ci left: 2.878236e-05	ci right 1.313557e-04	k: 8	n:120000
PIK3CA   120000 perm   34 sec   (3544 perm/sec)   p_kst 6.666667e-05   p_cons 4.583333e-04   p_joint 0

Joint ci ratio: 3.919970e+00	ci left: 0	ci right 2.837559e-05	k: 0	n:130000
Cons ci ratio: 4.752437e-01	ci left: 3.994376e-04	ci right 6.544747e-04	k: 67	n:130000
KS ci ratio: 1.306616e+00	ci left: 2.656830e-05	ci right 1.212517e-04	k: 8	n:130000
PIK3CA   130000 perm   37 sec   (3491 perm/sec)   p_kst 6.153846e-05   p_cons 5.153846e-04   p_joint 0

Joint ci ratio: 3.919972e+00	ci left: 0	ci right 2.634879e-05	k: 0	n:140000
Cons ci ratio: 4.495312e-01	ci left: 4.213959e-04	ci right 6.714769e-04	k: 75	n:140000
KS ci ratio: 1.306620e+00	ci left: 2.467054e-05	ci right 1.125911e-04	k: 8	n:140000
PIK3CA   140000 perm   41 sec   (3446 perm/sec)   p_kst 5.714286e-05   p_cons 5.357143e-04   p_joint 0

Joint ci ratio: 3.919974e+00	ci left: 0	ci right 2.459223e-05	k: 0	n:150000
Cons ci ratio: 4.275859e-01	ci left: 4.407503e-04	ci right 6.858944e-04	k: 83	n:150000
KS ci ratio: 1.306623e+00	ci left: 2.302582e-05	ci right 1.050852e-04	k: 8	n:150000
PIK3CA   150000 perm   44 sec   (3403 perm/sec)   p_kst 5.333333e-05   p_cons 5.533333e-04   p_joint 0

Joint ci ratio: 3.919976e+00	ci left: 0	ci right 2.305523e-05	k: 0	n:160000
Cons ci ratio: 3.702744e-01	ci left: 5.707416e-04	ci right 8.353948e-04	k: 111	n:160000
KS ci ratio: 1.181880e+00	ci left: 2.997157e-05	ci right 1.149367e-04	k: 10	n:160000
PIK3CA   160000 perm   48 sec   (3362 perm/sec)   p_kst 6.250000e-05   p_cons 6.937500e-04   p_joint 0

Joint ci ratio: 3.919977e+00	ci left: 0	ci right 2.169906e-05	k: 0	n:170000
Cons ci ratio: 3.562357e-01	ci left: 5.852802e-04	ci right 8.440039e-04	k: 120	n:170000
KS ci ratio: 1.181883e+00	ci left: 2.820852e-05	ci right 1.081759e-04	k: 10	n:170000
PIK3CA   170000 perm   51 sec   (3323 perm/sec)   p_kst 5.882353e-05   p_cons 7.058824e-04   p_joint 0

Joint ci ratio: 3.919978e+00	ci left: 0	ci right 2.049356e-05	k: 0	n:180000
Cons ci ratio: 3.463581e-01	ci left: 5.882228e-04	ci right 8.394210e-04	k: 127	n:180000
KS ci ratio: 1.131566e+00	ci left: 3.050683e-05	ci right 1.093420e-04	k: 11	n:180000
PIK3CA   180000 perm   55 sec   (3285 perm/sec)   p_kst 6.111111e-05   p_cons 7.055556e-04   p_joint 0

Joint ci ratio: 3.919979e+00	ci left: 0	ci right 1.941497e-05	k: 0	n:190000
Cons ci ratio: 3.385161e-01	ci left: 5.861272e-04	ci right 8.295254e-04	k: 133	n:190000
KS ci ratio: 1.087172e+00	ci left: 3.263502e-05	ci right 1.103215e-04	k: 12	n:190000
PIK3CA   190000 perm   59 sec   (3246 perm/sec)   p_kst 6.315789e-05   p_cons 7.000000e-04   p_joint 0

Joint ci ratio: 3.919980e+00	ci left: 0	ci right 1.844423e-05	k: 0	n:200000
Cons ci ratio: 3.311837e-01	ci left: 5.842989e-04	ci right 8.205622e-04	k: 139	n:200000
KS ci ratio: 1.087174e+00	ci left: 3.100325e-05	ci right 1.048056e-04	k: 12	n:200000
PIK3CA   200000 perm   62 sec   (3210 perm/sec)   p_kst 6.000000e-05   p_cons 6.950000e-04   p_joint 0

Joint ci ratio: 3.919981e+00	ci left: 0	ci right 1.756594e-05	k: 0	n:210000
Cons ci ratio: 3.243079e-01	ci left: 5.826960e-04	ci right 8.124019e-04	k: 145	n:210000
KS ci ratio: 1.087176e+00	ci left: 2.952689e-05	ci right 9.981494e-05	k: 12	n:210000
PIK3CA   210000 perm   66 sec   (3174 perm/sec)   p_kst 5.714286e-05   p_cons 6.904762e-04   p_joint 0

Joint ci ratio: 3.919982e+00	ci left: 0	ci right 1.676749e-05	k: 0	n:220000
Cons ci ratio: 3.147503e-01	ci left: 5.938394e-04	ci right 8.196522e-04	k: 154	n:220000
KS ci ratio: 1.047628e+00	ci left: 3.146378e-05	ci right 1.010451e-04	k: 13	n:220000
PIK3CA   220000 perm   70 sec   (3139 perm/sec)   p_kst 5.909091e-05   p_cons 7.000000e-04   p_joint 0

Joint ci ratio: 3.919983e+00	ci left: 0	ci right 1.603848e-05	k: 0	n:230000
Cons ci ratio: 3.088305e-01	ci left: 5.920664e-04	ci right 8.121368e-04	k: 160	n:230000
KS ci ratio: 1.012104e+00	ci left: 3.327834e-05	ci right 1.021267e-04	k: 14	n:230000
PIK3CA   230000 perm   74 sec   (3105 perm/sec)   p_kst 6.086957e-05   p_cons 6.956522e-04   p_joint 0

Joint ci ratio: 3.919984e+00	ci left: 0	ci right 1.537021e-05	k: 0	n:240000
Cons ci ratio: 3.005432e-01	ci left: 6.020313e-04	ci right 8.186547e-04	k: 169	n:240000
KS ci ratio: 9.799653e-01	ci left: 3.498118e-05	ci right 1.030822e-04	k: 15	n:240000
PIK3CA   240000 perm   78 sec   (3069 perm/sec)   p_kst 6.250000e-05   p_cons 7.041667e-04   p_joint 0

Joint ci ratio: 3.919984e+00	ci left: 0	ci right 1.475541e-05	k: 0	n:250000
Cons ci ratio: 2.928891e-01	ci left: 6.112714e-04	ci right 8.245794e-04	k: 178	n:250000
KS ci ratio: 9.799667e-01	ci left: 3.358192e-05	ci right 9.895895e-05	k: 15	n:250000
PIK3CA   250000 perm   82 sec   (3035 perm/sec)   p_kst 6.000000e-05   p_cons 7.120000e-04   p_joint 0

Joint ci ratio: 3.919985e+00	ci left: 0	ci right 1.418790e-05	k: 0	n:260000
Cons ci ratio: 2.865551e-01	ci left: 6.162949e-04	ci right 8.258633e-04	k: 186	n:260000
KS ci ratio: 9.799680e-01	ci left: 3.229029e-05	ci right 9.515291e-05	k: 15	n:260000
PIK3CA   260000 perm   87 sec   (3003 perm/sec)   p_kst 5.769231e-05   p_cons 7.153846e-04   p_joint 0

Joint ci ratio: 3.919985e+00	ci left: 0	ci right 1.366242e-05	k: 0	n:270000
Cons ci ratio: 2.835404e-01	ci left: 6.072245e-04	ci right 8.111475e-04	k: 190	n:270000
KS ci ratio: 9.239204e-01	ci left: 3.667866e-05	ci right 1.008079e-04	k: 17	n:270000
PIK3CA   270000 perm   91 sec   (2971 perm/sec)   p_kst 6.296296e-05   p_cons 7.037037e-04   p_joint 0

Joint ci ratio: 3.919986e+00	ci left: 0	ci right 1.317448e-05	k: 0	n:280000
Cons ci ratio: 2.784833e-01	ci left: 6.087765e-04	ci right 8.089350e-04	k: 197	n:280000
KS ci ratio: 8.992776e-01	ci left: 3.810022e-05	ci right 1.015972e-04	k: 18	n:280000
PIK3CA   280000 perm   95 sec   (2939 perm/sec)   p_kst 6.428571e-05   p_cons 7.035714e-04   p_joint 0

Joint ci ratio: 3.919986e+00	ci left: 0	ci right 1.272019e-05	k: 0	n:290000
Cons ci ratio: 2.743579e-01	ci left: 6.070399e-04	ci right 8.031609e-04	k: 203	n:290000
KS ci ratio: 8.992787e-01	ci left: 3.678640e-05	ci right 9.809396e-05	k: 18	n:290000
PIK3CA   290000 perm   100 sec   (2909 perm/sec)   p_kst 6.206897e-05   p_cons 7.000000e-04   p_joint 0

Joint ci ratio: 3.919987e+00	ci left: 0	ci right 1.229619e-05	k: 0	n:300000
Cons ci ratio: 2.710572e-01	ci left: 6.023322e-04	ci right 7.941926e-04	k: 208	n:300000
KS ci ratio: 8.992797e-01	ci left: 3.556018e-05	ci right 9.482422e-05	k: 18	n:300000
PIK3CA   300000 perm   104 sec   (2878 perm/sec)   p_kst 6.000000e-05   p_cons 6.933333e-04   p_joint 0

Joint ci ratio: 3.919987e+00	ci left: 0	ci right 1.189954e-05	k: 0	n:310000
Cons ci ratio: 2.678727e-01	ci left: 5.979414e-04	ci right 7.857899e-04	k: 213	n:310000
KS ci ratio: 8.553838e-01	ci left: 3.940856e-05	ci right 9.963818e-05	k: 20	n:310000
PIK3CA   310000 perm   109 sec   (2847 perm/sec)   p_kst 6.451613e-05   p_cons 6.870968e-04   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.152768e-05	k: 0	n:320000
Cons ci ratio: 2.595154e-01	ci left: 6.201155e-04	ci right 8.078673e-04	k: 227	n:320000
KS ci ratio: 8.173459e-01	ci left: 4.308574e-05	ci right 1.040865e-04	k: 22	n:320000
PIK3CA   320000 perm   114 sec   (2817 perm/sec)   p_kst 6.875000e-05   p_cons 7.093750e-04   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.117836e-05	k: 0	n:330000
Cons ci ratio: 2.545395e-01	ci left: 6.268404e-04	ci right 8.124119e-04	k: 236	n:330000
KS ci ratio: 8.001363e-01	ci left: 4.418240e-05	ci right 1.045779e-04	k: 23	n:330000
PIK3CA   330000 perm   118 sec   (2789 perm/sec)   p_kst 6.969697e-05   p_cons 7.151515e-04   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.084959e-05	k: 0	n:340000
Cons ci ratio: 2.498393e-01	ci left: 6.332019e-04	ci right 8.166571e-04	k: 245	n:340000
KS ci ratio: 8.001372e-01	ci left: 4.288290e-05	ci right 1.015021e-04	k: 23	n:340000
PIK3CA   340000 perm   123 sec   (2758 perm/sec)   p_kst 6.764706e-05   p_cons 7.205882e-04   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 1.053960e-05	k: 0	n:350000
Cons ci ratio: 2.449100e-01	ci left: 6.419113e-04	ci right 8.236624e-04	k: 255	n:350000
KS ci ratio: 7.839709e-01	ci left: 4.393549e-05	ci right 1.020271e-04	k: 24	n:350000
PIK3CA   350000 perm   128 sec   (2727 perm/sec)   p_kst 6.857143e-05   p_cons 7.285714e-04   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 1.024683e-05	k: 0	n:360000
Cons ci ratio: 2.420899e-01	ci left: 6.397301e-04	ci right 8.184647e-04	k: 261	n:360000
KS ci ratio: 7.839717e-01	ci left: 4.271504e-05	ci right 9.919310e-05	k: 24	n:360000
PIK3CA   360000 perm   133 sec   (2697 perm/sec)   p_kst 6.666667e-05   p_cons 7.250000e-04   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 9.969895e-06	k: 0	n:370000
Cons ci ratio: 2.375972e-01	ci left: 6.478435e-04	ci right 8.249916e-04	k: 271	n:370000
KS ci ratio: 7.543758e-01	ci left: 4.590337e-05	ci right 1.029605e-04	k: 26	n:370000
PIK3CA   370000 perm   139 sec   (2669 perm/sec)   p_kst 7.027027e-05   p_cons 7.324324e-04   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.707530e-06	k: 0	n:380000
Cons ci ratio: 2.337608e-01	ci left: 6.530810e-04	ci right 8.283611e-04	k: 280	n:380000
KS ci ratio: 7.278970e-01	ci left: 4.896316e-05	ci right 1.064925e-04	k: 28	n:380000
PIK3CA   380000 perm   144 sec   (2642 perm/sec)   p_kst 7.368421e-05   p_cons 7.368421e-04   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.458621e-06	k: 0	n:390000
Cons ci ratio: 2.317092e-01	ci left: 6.484082e-04	ci right 8.206881e-04	k: 285	n:390000
KS ci ratio: 7.278977e-01	ci left: 4.770768e-05	ci right 1.037619e-04	k: 28	n:390000
PIK3CA   390000 perm   149 sec   (2610 perm/sec)   p_kst 7.179487e-05   p_cons 7.307692e-04   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.222156e-06	k: 0	n:400000
Cons ci ratio: 2.293166e-01	ci left: 6.463317e-04	ci right 8.160357e-04	k: 291	n:400000
KS ci ratio: 7.278984e-01	ci left: 4.651498e-05	ci right 1.011679e-04	k: 28	n:400000
PIK3CA   400000 perm   155 sec   (2576 perm/sec)   p_kst 7.000000e-05   p_cons 7.275000e-04   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 8.997226e-06	k: 0	n:410000
Cons ci ratio: 2.254873e-01	ci left: 6.535688e-04	ci right 8.219092e-04	k: 301	n:410000
KS ci ratio: 7.156638e-01	ci left: 4.737063e-05	ci right 1.015810e-04	k: 29	n:410000
PIK3CA   410000 perm   161 sec   (2550 perm/sec)   p_kst 7.073171e-05   p_cons 7.341463e-04   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.783008e-06	k: 0	n:420000
Cons ci ratio: 2.229187e-01	ci left: 6.537383e-04	ci right 8.199411e-04	k: 308	n:420000
KS ci ratio: 7.156644e-01	ci left: 4.624275e-05	ci right 9.916241e-05	k: 29	n:420000
PIK3CA   420000 perm   167 sec   (2521 perm/sec)   p_kst 6.904762e-05   p_cons 7.333333e-04   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.578753e-06	k: 0	n:430000
Cons ci ratio: 2.211374e-01	ci left: 6.495162e-04	ci right 8.131465e-04	k: 313	n:430000
KS ci ratio: 7.040266e-01	ci left: 4.707228e-05	ci right 9.959588e-05	k: 30	n:430000
PIK3CA   430000 perm   172 sec   (2496 perm/sec)   p_kst 6.976744e-05   p_cons 7.279070e-04   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.383782e-06	k: 0	n:440000
Cons ci ratio: 2.166957e-01	ci left: 6.626806e-04	ci right 8.258280e-04	k: 326	n:440000
KS ci ratio: 7.040272e-01	ci left: 4.600244e-05	ci right 9.733237e-05	k: 30	n:440000
PIK3CA   440000 perm   178 sec   (2474 perm/sec)   p_kst 6.818182e-05   p_cons 7.409091e-04   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.197476e-06	k: 0	n:450000
Cons ci ratio: 2.137734e-01	ci left: 6.668765e-04	ci right 8.285525e-04	k: 335	n:450000
KS ci ratio: 7.040278e-01	ci left: 4.498016e-05	ci right 9.516946e-05	k: 30	n:450000
PIK3CA   450000 perm   183 sec   (2453 perm/sec)   p_kst 6.666667e-05   p_cons 7.444444e-04   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.019271e-06	k: 0	n:460000
Cons ci ratio: 2.131413e-01	ci left: 6.564942e-04	ci right 8.151209e-04	k: 337	n:460000
KS ci ratio: 7.040283e-01	ci left: 4.400232e-05	ci right 9.310058e-05	k: 30	n:460000
PIK3CA   460000 perm   189 sec   (2431 perm/sec)   p_kst 6.521739e-05   p_cons 7.326087e-04   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.848649e-06	k: 0	n:470000
Cons ci ratio: 2.103587e-01	ci left: 6.606599e-04	ci right 8.179406e-04	k: 346	n:470000
KS ci ratio: 6.929403e-01	ci left: 4.481531e-05	ci right 9.362004e-05	k: 31	n:470000
PIK3CA   470000 perm   195 sec   (2410 perm/sec)   p_kst 6.595745e-05   p_cons 7.361702e-04   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.685136e-06	k: 0	n:480000
Cons ci ratio: 2.071009e-01	ci left: 6.686153e-04	ci right 8.250126e-04	k: 357	n:480000
KS ci ratio: 6.929408e-01	ci left: 4.388165e-05	ci right 9.166964e-05	k: 31	n:480000
PIK3CA   480000 perm   201 sec   (2388 perm/sec)   p_kst 6.458333e-05   p_cons 7.437500e-04   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.528297e-06	k: 0	n:490000
Cons ci ratio: 2.056702e-01	ci left: 6.646467e-04	ci right 8.189065e-04	k: 362	n:490000
KS ci ratio: 6.823607e-01	ci left: 4.466975e-05	ci right 9.219152e-05	k: 32	n:490000
PIK3CA   490000 perm   207 sec   (2366 perm/sec)   p_kst 6.530612e-05   p_cons 7.387755e-04   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.377732e-06	k: 0	n:500000
Cons ci ratio: 2.039915e-01	ci left: 6.627382e-04	ci right 8.151431e-04	k: 368	n:500000
KS ci ratio: 6.823612e-01	ci left: 4.377635e-05	ci right 9.034771e-05	k: 32	n:500000
PIK3CA   500000 perm   213 sec   (2343 perm/sec)   p_kst 6.400000e-05   p_cons 7.360000e-04   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.233071e-06	k: 0	n:510000
Cons ci ratio: 2.004893e-01	ci left: 6.739432e-04	ci right 8.259386e-04	k: 381	n:510000
KS ci ratio: 6.722514e-01	ci left: 4.454096e-05	ci right 9.086993e-05	k: 33	n:510000
PIK3CA   510000 perm   220 sec   (2321 perm/sec)   p_kst 6.470588e-05   p_cons 7.470588e-04   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.093974e-06	k: 0	n:520000
Cons ci ratio: 1.986773e-01	ci left: 6.737716e-04	ci right 8.241886e-04	k: 388	n:520000
KS ci ratio: 6.722518e-01	ci left: 4.368439e-05	ci right 8.912245e-05	k: 33	n:520000
PIK3CA   520000 perm   226 sec   (2300 perm/sec)   p_kst 6.346154e-05   p_cons 7.461538e-04   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.960126e-06	k: 0	n:530000
Cons ci ratio: 1.974131e-01	ci left: 6.700250e-04	ci right 8.185392e-04	k: 393	n:530000
KS ci ratio: 6.533105e-01	ci left: 4.599812e-05	ci right 9.184132e-05	k: 35	n:530000
PIK3CA   530000 perm   233 sec   (2274 perm/sec)   p_kst 6.603774e-05   p_cons 7.415094e-04   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.831235e-06	k: 0	n:540000
Cons ci ratio: 1.959272e-01	ci left: 6.681810e-04	ci right 8.150387e-04	k: 399	n:540000
KS ci ratio: 6.444214e-01	ci left: 4.669294e-05	ci right 9.229358e-05	k: 36	n:540000
PIK3CA   540000 perm   240 sec   (2254 perm/sec)   p_kst 6.666667e-05   p_cons 7.388889e-04   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.707031e-06	k: 0	n:550000
Cons ci ratio: 1.944743e-01	ci left: 6.664082e-04	ci right 8.116615e-04	k: 405	n:550000
KS ci ratio: 6.444218e-01	ci left: 4.584397e-05	ci right 9.061554e-05	k: 36	n:550000
PIK3CA   550000 perm   246 sec   (2234 perm/sec)   p_kst 6.545455e-05   p_cons 7.363636e-04   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.587263e-06	k: 0	n:560000
Cons ci ratio: 1.935239e-01	ci left: 6.613038e-04	ci right 8.046571e-04	k: 409	n:560000
KS ci ratio: 6.444222e-01	ci left: 4.502532e-05	ci right 8.899743e-05	k: 36	n:560000
PIK3CA   560000 perm   253 sec   (2215 perm/sec)   p_kst 6.428571e-05   p_cons 7.303571e-04   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.471697e-06	k: 0	n:570000
Cons ci ratio: 1.907518e-01	ci left: 6.697423e-04	ci right 8.126040e-04	k: 421	n:570000
KS ci ratio: 6.358862e-01	ci left: 4.570463e-05	ci right 8.947193e-05	k: 37	n:570000
PIK3CA   570000 perm   259 sec   (2197 perm/sec)   p_kst 6.491228e-05   p_cons 7.385965e-04   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.360117e-06	k: 0	n:580000
Cons ci ratio: 1.885307e-01	ci left: 6.746180e-04	ci right 8.166524e-04	k: 431	n:580000
KS ci ratio: 6.276807e-01	ci left: 4.636430e-05	ci right 8.992644e-05	k: 38	n:580000
PIK3CA   580000 perm   266 sec   (2180 perm/sec)   p_kst 6.551724e-05   p_cons 7.431034e-04   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.252319e-06	k: 0	n:590000
Cons ci ratio: 1.870216e-01	ci left: 6.744905e-04	ci right 8.152323e-04	k: 438	n:590000
KS ci ratio: 6.121794e-01	ci left: 4.843532e-05	ci right 9.231861e-05	k: 40	n:590000
PIK3CA   590000 perm   273 sec   (2163 perm/sec)   p_kst 6.779661e-05   p_cons 7.423729e-04   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.148114e-06	k: 0	n:600000
Cons ci ratio: 1.853404e-01	ci left: 6.759609e-04	ci right 8.155991e-04	k: 446	n:600000
KS ci ratio: 5.977725e-01	ci left: 5.045029e-05	ci right 9.461850e-05	k: 42	n:600000
PIK3CA   600000 perm   280 sec   (2144 perm/sec)   p_kst 7.000000e-05   p_cons 7.433333e-04   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 6.047325e-06	k: 0	n:610000
Cons ci ratio: 1.845172e-01	ci left: 6.711333e-04	ci right 8.090895e-04	k: 450	n:610000
KS ci ratio: 5.909404e-01	ci left: 5.101572e-05	ci right 9.495084e-05	k: 43	n:610000
PIK3CA   610000 perm   287 sec   (2124 perm/sec)   p_kst 7.049180e-05   p_cons 7.377049e-04   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.949788e-06	k: 0	n:620000
Cons ci ratio: 1.833021e-01	ci left: 6.695404e-04	ci right 8.061622e-04	k: 456	n:620000
KS ci ratio: 5.909408e-01	ci left: 5.019288e-05	ci right 9.341939e-05	k: 43	n:620000
PIK3CA   620000 perm   294 sec   (2109 perm/sec)   p_kst 6.935484e-05   p_cons 7.354839e-04   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.855347e-06	k: 0	n:630000
Cons ci ratio: 1.815232e-01	ci left: 6.725463e-04	ci right 8.083031e-04	k: 465	n:630000
KS ci ratio: 5.909411e-01	ci left: 4.939616e-05	ci right 9.193656e-05	k: 43	n:630000
PIK3CA   630000 perm   301 sec   (2094 perm/sec)   p_kst 6.825397e-05   p_cons 7.380952e-04   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.763858e-06	k: 0	n:640000
Cons ci ratio: 1.792295e-01	ci left: 6.799414e-04	ci right 8.152687e-04	k: 477	n:640000
KS ci ratio: 5.843381e-01	ci left: 4.995429e-05	ci right 9.229258e-05	k: 44	n:640000
PIK3CA   640000 perm   308 sec   (2079 perm/sec)   p_kst 6.875000e-05   p_cons 7.453125e-04   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.675183e-06	k: 0	n:650000
Cons ci ratio: 1.779315e-01	ci left: 6.797686e-04	ci right 8.139763e-04	k: 484	n:650000
KS ci ratio: 5.843384e-01	ci left: 4.918575e-05	ci right 9.087271e-05	k: 44	n:650000
PIK3CA   650000 perm   315 sec   (2064 perm/sec)   p_kst 6.769231e-05   p_cons 7.446154e-04   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.589196e-06	k: 0	n:660000
Cons ci ratio: 1.772027e-01	ci left: 6.752602e-04	ci right 8.079732e-04	k: 488	n:660000
KS ci ratio: 5.779519e-01	ci left: 4.973271e-05	ci right 9.123159e-05	k: 45	n:660000
PIK3CA   660000 perm   322 sec   (2048 perm/sec)   p_kst 6.818182e-05   p_cons 7.393939e-04   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.505775e-06	k: 0	n:670000
Cons ci ratio: 1.761257e-01	ci left: 6.737409e-04	ci right 8.052648e-04	k: 494	n:670000
KS ci ratio: 5.779522e-01	ci left: 4.899042e-05	ci right 8.986994e-05	k: 45	n:670000
PIK3CA   670000 perm   330 sec   (2032 perm/sec)   p_kst 6.716418e-05   p_cons 7.373134e-04   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.424808e-06	k: 0	n:680000
Cons ci ratio: 1.745458e-01	ci left: 6.764875e-04	ci right 8.072381e-04	k: 503	n:680000
KS ci ratio: 5.779525e-01	ci left: 4.826997e-05	ci right 8.854833e-05	k: 45	n:680000
PIK3CA   680000 perm   337 sec   (2015 perm/sec)   p_kst 6.617647e-05   p_cons 7.397059e-04   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.346188e-06	k: 0	n:690000
Cons ci ratio: 1.726712e-01	ci left: 6.819328e-04	ci right 8.121728e-04	k: 514	n:690000
KS ci ratio: 5.779528e-01	ci left: 4.757040e-05	ci right 8.726504e-05	k: 45	n:690000
PIK3CA   690000 perm   345 sec   (1999 perm/sec)   p_kst 6.521739e-05   p_cons 7.449275e-04   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.269814e-06	k: 0	n:700000
Cons ci ratio: 1.713455e-01	ci left: 6.831275e-04	ci right 8.124904e-04	k: 522	n:700000
KS ci ratio: 5.779531e-01	ci left: 4.689082e-05	ci right 8.601841e-05	k: 45	n:700000
PIK3CA   700000 perm   353 sec   (1983 perm/sec)   p_kst 6.428571e-05   p_cons 7.457143e-04   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.195591e-06	k: 0	n:710000
Cons ci ratio: 1.698897e-01	ci left: 6.856408e-04	ci right 8.142636e-04	k: 531	n:710000
KS ci ratio: 5.779533e-01	ci left: 4.623038e-05	ci right 8.480689e-05	k: 45	n:710000
PIK3CA   710000 perm   362 sec   (1963 perm/sec)   p_kst 6.338028e-05   p_cons 7.478873e-04   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 5.123431e-06	k: 0	n:720000
Cons ci ratio: 1.697311e-01	ci left: 6.774477e-04	ci right 8.044026e-04	k: 532	n:720000
KS ci ratio: 5.779536e-01	ci left: 4.558828e-05	ci right 8.362903e-05	k: 45	n:720000
PIK3CA   720000 perm   370 sec   (1946 perm/sec)   p_kst 6.250000e-05   p_cons 7.388889e-04   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 5.053247e-06	k: 0	n:730000
Cons ci ratio: 1.676976e-01	ci left: 6.852241e-04	ci right 8.119426e-04	k: 545	n:730000
KS ci ratio: 5.717720e-01	ci left: 4.613430e-05	ci right 8.405056e-05	k: 46	n:730000
PIK3CA   730000 perm   378 sec   (1932 perm/sec)   p_kst 6.301370e-05   p_cons 7.465753e-04   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.984960e-06	k: 0	n:740000
Cons ci ratio: 1.663322e-01	ci left: 6.876182e-04	ci right 8.136403e-04	k: 554	n:740000
KS ci ratio: 5.717722e-01	ci left: 4.551086e-05	ci right 8.291475e-05	k: 46	n:740000
PIK3CA   740000 perm   386 sec   (1918 perm/sec)   p_kst 6.216216e-05   p_cons 7.486486e-04   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.918494e-06	k: 0	n:750000
Cons ci ratio: 1.651462e-01	ci left: 6.886742e-04	ci right 8.139005e-04	k: 562	n:750000
KS ci ratio: 5.657848e-01	ci left: 4.604546e-05	ci right 8.333252e-05	k: 47	n:750000
PIK3CA   750000 perm   394 sec   (1904 perm/sec)   p_kst 6.266667e-05   p_cons 7.493333e-04   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.853777e-06	k: 0	n:760000
Cons ci ratio: 1.644180e-01	ci left: 6.859203e-04	ci right 8.100414e-04	k: 567	n:760000
KS ci ratio: 5.599816e-01	ci left: 4.656800e-05	ci right 8.373734e-05	k: 48	n:760000
PIK3CA   760000 perm   402 sec   (1891 perm/sec)   p_kst 6.315789e-05   p_cons 7.460526e-04   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.790741e-06	k: 0	n:770000
Cons ci ratio: 1.627077e-01	ci left: 6.919589e-04	ci right 8.157429e-04	k: 579	n:770000
KS ci ratio: 5.599818e-01	ci left: 4.596322e-05	ci right 8.264986e-05	k: 48	n:770000
PIK3CA   770000 perm   410 sec   (1878 perm/sec)   p_kst 6.233766e-05   p_cons 7.519481e-04   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.729321e-06	k: 0	n:780000
Cons ci ratio: 1.607782e-01	ci left: 7.003101e-04	ci right 8.239589e-04	k: 593	n:780000
KS ci ratio: 5.543536e-01	ci left: 4.647531e-05	ci right 8.305121e-05	k: 49	n:780000
PIK3CA   780000 perm   418 sec   (1865 perm/sec)   p_kst 6.282051e-05   p_cons 7.602564e-04   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.669457e-06	k: 0	n:790000
Cons ci ratio: 1.601060e-01	ci left: 6.975203e-04	ci right 8.201122e-04	k: 598	n:790000
KS ci ratio: 5.384350e-01	ci left: 4.915998e-05	ci right 8.631694e-05	k: 52	n:790000
PIK3CA   790000 perm   426 sec   (1853 perm/sec)   p_kst 6.582278e-05   p_cons 7.569620e-04   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.611089e-06	k: 0	n:800000
Cons ci ratio: 1.593103e-01	ci left: 6.960015e-04	ci right 8.176604e-04	k: 604	n:800000
KS ci ratio: 5.285542e-01	ci left: 5.070847e-05	ci right 8.807195e-05	k: 54	n:800000
PIK3CA   800000 perm   435 sec   (1841 perm/sec)   p_kst 6.750000e-05   p_cons 7.550000e-04   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.554162e-06	k: 0	n:810000
Cons ci ratio: 1.587866e-01	ci left: 6.921506e-04	ci right 8.127006e-04	k: 608	n:810000
KS ci ratio: 5.285544e-01	ci left: 5.008244e-05	ci right 8.698466e-05	k: 54	n:810000
PIK3CA   810000 perm   443 sec   (1828 perm/sec)   p_kst 6.666667e-05   p_cons 7.506173e-04   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.498623e-06	k: 0	n:820000
Cons ci ratio: 1.578819e-01	ci left: 6.919080e-04	ci right 8.116642e-04	k: 615	n:820000
KS ci ratio: 5.238138e-01	ci left: 5.052908e-05	ci right 8.730407e-05	k: 55	n:820000
PIK3CA   820000 perm   452 sec   (1816 perm/sec)   p_kst 6.707317e-05   p_cons 7.500000e-04   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.444423e-06	k: 0	n:830000
Cons ci ratio: 1.569924e-01	ci left: 6.916733e-04	ci right 8.106508e-04	k: 622	n:830000
KS ci ratio: 5.238140e-01	ci left: 4.992029e-05	ci right 8.625222e-05	k: 55	n:830000
PIK3CA   830000 perm   460 sec   (1803 perm/sec)   p_kst 6.626506e-05   p_cons 7.493976e-04   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.391514e-06	k: 0	n:840000
Cons ci ratio: 1.564912e-01	ci left: 6.880141e-04	ci right 8.059489e-04	k: 626	n:840000
KS ci ratio: 5.103223e-01	ci left: 5.243116e-05	ci right 8.925916e-05	k: 58	n:840000
PIK3CA   840000 perm   469 sec   (1792 perm/sec)   p_kst 6.904762e-05   p_cons 7.452381e-04   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.339849e-06	k: 0	n:850000
Cons ci ratio: 1.559947e-01	ci left: 6.844416e-04	ci right 8.013570e-04	k: 630	n:850000
KS ci ratio: 5.060517e-01	ci left: 5.283986e-05	ci right 8.953522e-05	k: 59	n:850000
PIK3CA   850000 perm   477 sec   (1781 perm/sec)   p_kst 6.941176e-05   p_cons 7.411765e-04   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.289386e-06	k: 0	n:860000
Cons ci ratio: 1.546522e-01	ci left: 6.887767e-04	ci right 8.053262e-04	k: 641	n:860000
KS ci ratio: 5.018865e-01	ci left: 5.324032e-05	ci right 8.980363e-05	k: 60	n:860000
PIK3CA   860000 perm   486 sec   (1769 perm/sec)   p_kst 6.976744e-05   p_cons 7.453488e-04   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.240082e-06	k: 0	n:870000
Cons ci ratio: 1.536975e-01	ci left: 6.897004e-04	ci right 8.056194e-04	k: 649	n:870000
KS ci ratio: 4.978225e-01	ci left: 5.363279e-05	ci right 9.006468e-05	k: 61	n:870000
PIK3CA   870000 perm   495 sec   (1759 perm/sec)   p_kst 7.011494e-05   p_cons 7.459770e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.191900e-06	k: 0	n:880000
Cons ci ratio: 1.531100e-01	ci left: 6.873265e-04	ci right 8.023645e-04	k: 654	n:880000
KS ci ratio: 4.978227e-01	ci left: 5.302332e-05	ci right 8.904123e-05	k: 61	n:880000
PIK3CA   880000 perm   503 sec   (1748 perm/sec)   p_kst 6.931818e-05   p_cons 7.431818e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.144800e-06	k: 0	n:890000
Cons ci ratio: 1.521834e-01	ci left: 6.882492e-04	ci right 8.026809e-04	k: 662	n:890000
KS ci ratio: 4.978229e-01	ci left: 5.242755e-05	ci right 8.804077e-05	k: 61	n:890000
PIK3CA   890000 perm   513 sec   (1737 perm/sec)   p_kst 6.853933e-05   p_cons 7.438202e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.098747e-06	k: 0	n:900000
Cons ci ratio: 1.511607e-01	ci left: 6.902225e-04	ci right 8.041414e-04	k: 671	n:900000
KS ci ratio: 4.978231e-01	ci left: 5.184501e-05	ci right 8.706255e-05	k: 61	n:900000
PIK3CA   900000 perm   522 sec   (1725 perm/sec)   p_kst 6.777778e-05   p_cons 7.455556e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.053705e-06	k: 0	n:910000
Cons ci ratio: 1.503796e-01	ci left: 6.900398e-04	ci right 8.032870e-04	k: 678	n:910000
KS ci ratio: 4.899825e-01	ci left: 5.319922e-05	ci right 8.857537e-05	k: 63	n:910000
PIK3CA   910000 perm   531 sec   (1714 perm/sec)   p_kst 6.923077e-05   p_cons 7.450549e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.009644e-06	k: 0	n:920000
Cons ci ratio: 1.497197e-01	ci left: 6.888162e-04	ci right 8.013221e-04	k: 684	n:920000
KS ci ratio: 4.899827e-01	ci left: 5.262096e-05	ci right 8.761260e-05	k: 63	n:920000
PIK3CA   920000 perm   540 sec   (1703 perm/sec)   p_kst 6.847826e-05   p_cons 7.434783e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.966529e-06	k: 0	n:930000
Cons ci ratio: 1.483184e-01	ci left: 6.948670e-04	ci right 8.072048e-04	k: 697	n:930000
KS ci ratio: 4.825013e-01	ci left: 5.394194e-05	ci right 8.908284e-05	k: 65	n:930000
PIK3CA   930000 perm   550 sec   (1692 perm/sec)   p_kst 6.989247e-05   p_cons 7.494624e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.924332e-06	k: 0	n:940000
Cons ci ratio: 1.472671e-01	ci left: 6.977198e-04	ci right 8.096489e-04	k: 707	n:940000
KS ci ratio: 4.825014e-01	ci left: 5.336808e-05	ci right 8.813516e-05	k: 65	n:940000
PIK3CA   940000 perm   559 sec   (1680 perm/sec)   p_kst 6.914894e-05   p_cons 7.521277e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.883023e-06	k: 0	n:950000
Cons ci ratio: 1.460343e-01	ci left: 7.025436e-04	ci right 8.142208e-04	k: 719	n:950000
KS ci ratio: 4.825016e-01	ci left: 5.280631e-05	ci right 8.720743e-05	k: 65	n:950000
PIK3CA   950000 perm   569 sec   (1668 perm/sec)   p_kst 6.842105e-05   p_cons 7.568421e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.842575e-06	k: 0	n:960000
Cons ci ratio: 1.449312e-01	ci left: 7.062668e-04	ci right 8.176144e-04	k: 730	n:960000
KS ci ratio: 4.753527e-01	ci left: 5.408798e-05	ci right 8.863211e-05	k: 67	n:960000
PIK3CA   960000 perm   579 sec   (1658 perm/sec)   p_kst 6.979167e-05   p_cons 7.604167e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.802961e-06	k: 0	n:970000
Cons ci ratio: 1.445365e-01	ci left: 7.029600e-04	ci right 8.134584e-04	k: 734	n:970000
KS ci ratio: 4.718955e-01	ci left: 5.443819e-05	ci right 8.887154e-05	k: 68	n:970000
PIK3CA   970000 perm   590 sec   (1645 perm/sec)   p_kst 7.010309e-05   p_cons 7.567010e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.764156e-06	k: 0	n:980000
Cons ci ratio: 1.442428e-01	ci left: 6.987375e-04	ci right 8.083297e-04	k: 737	n:980000
KS ci ratio: 4.718957e-01	ci left: 5.388270e-05	ci right 8.796470e-05	k: 68	n:980000
PIK3CA   980000 perm   599 sec   (1635 perm/sec)   p_kst 6.938776e-05   p_cons 7.520408e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.726134e-06	k: 0	n:990000
Cons ci ratio: 1.438537e-01	ci left: 6.955742e-04	ci right 8.043508e-04	k: 741	n:990000
KS ci ratio: 4.685128e-01	ci left: 5.422879e-05	ci right 8.820516e-05	k: 69	n:990000
PIK3CA   990000 perm   609 sec   (1625 perm/sec)   p_kst 6.969697e-05   p_cons 7.484848e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.688873e-06	k: 0	n:1000000
Cons ci ratio: 1.532339e-01	ci left: 6.038837e-04	ci right 7.050450e-04	k: 653	n:1000000
KS ci ratio: 4.652017e-01	ci left: 5.456883e-05	ci right 8.843997e-05	k: 70	n:1000000
PIK3CA   1000000 perm   619 sec   (1615 perm/sec)   p_kst 7.000000e-05   p_cons 6.530000e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.652349e-06	k: 0	n:1010000
Cons ci ratio: 1.523051e-01	ci left: 6.055227e-04	ci right 7.062876e-04	k: 661	n:1010000
KS ci ratio: 4.619597e-01	ci left: 5.490296e-05	ci right 8.866932e-05	k: 71	n:1010000
PIK3CA   1010000 perm   629 sec   (1605 perm/sec)   p_kst 7.029703e-05   p_cons 6.544554e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.616542e-06	k: 0	n:1020000
Cons ci ratio: 1.521906e-01	ci left: 6.005291e-04	ci right 7.003811e-04	k: 662	n:1020000
KS ci ratio: 4.587847e-01	ci left: 5.523134e-05	ci right 8.889339e-05	k: 72	n:1020000
PIK3CA   1020000 perm   640 sec   (1595 perm/sec)   p_kst 7.058824e-05   p_cons 6.490196e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.581430e-06	k: 0	n:1030000
Cons ci ratio: 1.513935e-01	ci left: 6.012367e-04	ci right 7.006353e-04	k: 669	n:1030000
KS ci ratio: 4.556742e-01	ci left: 5.555413e-05	ci right 8.911233e-05	k: 73	n:1030000
PIK3CA   1030000 perm   650 sec   (1586 perm/sec)   p_kst 7.087379e-05   p_cons 6.495146e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.546993e-06	k: 0	n:1040000
Cons ci ratio: 1.510559e-01	ci left: 5.982310e-04	ci right 6.968922e-04	k: 672	n:1040000
KS ci ratio: 4.556743e-01	ci left: 5.501996e-05	ci right 8.825549e-05	k: 73	n:1040000
PIK3CA   1040000 perm   660 sec   (1577 perm/sec)   p_kst 7.019231e-05   p_cons 6.461538e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.513212e-06	k: 0	n:1050000
Cons ci ratio: 1.502764e-01	ci left: 5.989489e-04	ci right 6.971729e-04	k: 679	n:1050000
KS ci ratio: 4.467089e-01	ci left: 5.702837e-05	ci right 9.059473e-05	k: 76	n:1050000
PIK3CA   1050000 perm   670 sec   (1568 perm/sec)   p_kst 7.238095e-05   p_cons 6.466667e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.480069e-06	k: 0	n:1060000
Cons ci ratio: 1.498365e-01	ci left: 5.969303e-04	ci right 6.945110e-04	k: 683	n:1060000
KS ci ratio: 4.467090e-01	ci left: 5.649036e-05	ci right 8.974007e-05	k: 76	n:1060000
PIK3CA   1060000 perm   680 sec   (1559 perm/sec)   p_kst 7.169811e-05   p_cons 6.443396e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.447545e-06	k: 0	n:1070000
Cons ci ratio: 1.488602e-01	ci left: 5.994485e-04	ci right 6.967455e-04	k: 692	n:1070000
KS ci ratio: 4.467092e-01	ci left: 5.596241e-05	ci right 8.890139e-05	k: 76	n:1070000
PIK3CA   1070000 perm   690 sec   (1550 perm/sec)   p_kst 7.102804e-05   p_cons 6.467290e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.415623e-06	k: 0	n:1080000
Cons ci ratio: 1.477974e-01	ci left: 6.028137e-04	ci right 6.998967e-04	k: 702	n:1080000
KS ci ratio: 4.438364e-01	ci left: 5.626632e-05	ci right 8.910734e-05	k: 77	n:1080000
PIK3CA   1080000 perm   701 sec   (1540 perm/sec)   p_kst 7.129630e-05   p_cons 6.500000e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.384287e-06	k: 0	n:1090000
Cons ci ratio: 1.467571e-01	ci left: 6.061196e-04	ci right 7.029877e-04	k: 712	n:1090000
KS ci ratio: 4.438365e-01	ci left: 5.575011e-05	ci right 8.828985e-05	k: 77	n:1090000
PIK3CA   1090000 perm   712 sec   (1532 perm/sec)   p_kst 7.064220e-05   p_cons 6.532110e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.353521e-06	k: 0	n:1100000
Cons ci ratio: 1.463473e-01	ci left: 6.041124e-04	ci right 7.003666e-04	k: 716	n:1100000
KS ci ratio: 4.382532e-01	ci left: 5.685953e-05	ci right 8.950609e-05	k: 79	n:1100000
PIK3CA   1100000 perm   722 sec   (1523 perm/sec)   p_kst 7.181818e-05   p_cons 6.509091e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.323309e-06	k: 0	n:1110000
Cons ci ratio: 1.453371e-01	ci left: 6.073503e-04	ci right 7.033944e-04	k: 726	n:1110000
KS ci ratio: 4.382533e-01	ci left: 5.634728e-05	ci right 8.869974e-05	k: 79	n:1110000
PIK3CA   1110000 perm   733 sec   (1514 perm/sec)   p_kst 7.117117e-05   p_cons 6.540541e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.293637e-06	k: 0	n:1120000
Cons ci ratio: 1.441519e-01	ci left: 6.122539e-04	ci right 7.082160e-04	k: 738	n:1120000
KS ci ratio: 4.355396e-01	ci left: 5.663881e-05	ci right 8.889826e-05	k: 80	n:1120000
PIK3CA   1120000 perm   744 sec   (1505 perm/sec)   p_kst 7.142857e-05   p_cons 6.589286e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.264490e-06	k: 0	n:1130000
Cons ci ratio: 1.437635e-01	ci left: 6.102480e-04	ci right 7.056159e-04	k: 742	n:1130000
KS ci ratio: 4.355398e-01	ci left: 5.613758e-05	ci right 8.811156e-05	k: 80	n:1130000
PIK3CA   1130000 perm   755 sec   (1497 perm/sec)   p_kst 7.079646e-05   p_cons 6.566372e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.235854e-06	k: 0	n:1140000
Cons ci ratio: 1.428055e-01	ci left: 6.133525e-04	ci right 7.085124e-04	k: 752	n:1140000
KS ci ratio: 4.328758e-01	ci left: 5.642643e-05	ci right 8.831117e-05	k: 81	n:1140000
PIK3CA   1140000 perm   766 sec   (1488 perm/sec)   p_kst 7.105263e-05   p_cons 6.596491e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.207716e-06	k: 0	n:1150000
Cons ci ratio: 1.425221e-01	ci left: 6.105345e-04	ci right 7.050532e-04	k: 755	n:1150000
KS ci ratio: 4.328760e-01	ci left: 5.593577e-05	ci right 8.754325e-05	k: 81	n:1150000
PIK3CA   1150000 perm   777 sec   (1479 perm/sec)   p_kst 7.043478e-05   p_cons 6.565217e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.180063e-06	k: 0	n:1160000
Cons ci ratio: 1.424283e-01	ci left: 6.061025e-04	ci right 6.998681e-04	k: 756	n:1160000
KS ci ratio: 4.328761e-01	ci left: 5.545356e-05	ci right 8.678858e-05	k: 81	n:1160000
PIK3CA   1160000 perm   789 sec   (1471 perm/sec)   p_kst 6.982759e-05   p_cons 6.517241e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.152883e-06	k: 0	n:1170000
Cons ci ratio: 1.418672e-01	ci left: 6.058680e-04	ci right 6.991968e-04	k: 762	n:1170000
KS ci ratio: 4.302605e-01	ci left: 5.574143e-05	ci right 8.699381e-05	k: 82	n:1170000
PIK3CA   1170000 perm   800 sec   (1463 perm/sec)   p_kst 7.008547e-05   p_cons 6.512821e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.126164e-06	k: 0	n:1180000
Cons ci ratio: 1.411292e-01	ci left: 6.072732e-04	ci right 7.002909e-04	k: 770	n:1180000
KS ci ratio: 4.302606e-01	ci left: 5.526904e-05	ci right 8.625658e-05	k: 82	n:1180000
PIK3CA   1180000 perm   811 sec   (1455 perm/sec)   p_kst 6.949153e-05   p_cons 6.525424e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.099894e-06	k: 0	n:1190000
Cons ci ratio: 1.399538e-01	ci left: 6.127104e-04	ci right 7.057142e-04	k: 783	n:1190000
KS ci ratio: 4.302607e-01	ci left: 5.480459e-05	ci right 8.553174e-05	k: 82	n:1190000
PIK3CA   1190000 perm   823 sec   (1447 perm/sec)   p_kst 6.890756e-05   p_cons 6.579832e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.074061e-06	k: 0	n:1200000
Cons ci ratio: 1.391572e-01	ci left: 6.148427e-04	ci right 7.075949e-04	k: 792	n:1200000
KS ci ratio: 4.276919e-01	ci left: 5.509123e-05	ci right 8.574178e-05	k: 83	n:1200000
PIK3CA   1200000 perm   834 sec   (1439 perm/sec)   p_kst 6.916667e-05   p_cons 6.600000e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.048656e-06	k: 0	n:1210000
Cons ci ratio: 1.384605e-01	ci left: 6.161434e-04	ci right 7.085880e-04	k: 800	n:1210000
KS ci ratio: 4.226893e-01	ci left: 5.611193e-05	ci right 8.686194e-05	k: 85	n:1210000
PIK3CA   1210000 perm   846 sec   (1431 perm/sec)   p_kst 7.024793e-05   p_cons 6.611570e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.023667e-06	k: 0	n:1220000
Cons ci ratio: 1.378594e-01	ci left: 6.166324e-04	ci right 7.087158e-04	k: 807	n:1220000
KS ci ratio: 4.226894e-01	ci left: 5.565199e-05	ci right 8.614996e-05	k: 85	n:1220000
PIK3CA   1220000 perm   857 sec   (1423 perm/sec)   p_kst 6.967213e-05   p_cons 6.614754e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.999084e-06	k: 0	n:1230000
Cons ci ratio: 1.374349e-01	ci left: 6.155442e-04	ci right 7.071588e-04	k: 812	n:1230000
KS ci ratio: 4.226895e-01	ci left: 5.519953e-05	ci right 8.544956e-05	k: 85	n:1230000
PIK3CA   1230000 perm   869 sec   (1416 perm/sec)   p_kst 6.910569e-05   p_cons 6.601626e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.974898e-06	k: 0	n:1240000
Cons ci ratio: 1.368470e-01	ci left: 6.160316e-04	ci right 7.072946e-04	k: 819	n:1240000
KS ci ratio: 4.178584e-01	ci left: 5.619669e-05	ci right 8.654298e-05	k: 87	n:1240000
PIK3CA   1240000 perm   880 sec   (1409 perm/sec)   p_kst 7.016129e-05   p_cons 6.604839e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.951099e-06	k: 0	n:1250000
Cons ci ratio: 1.364318e-01	ci left: 6.149666e-04	ci right 7.057730e-04	k: 824	n:1250000
KS ci ratio: 4.178585e-01	ci left: 5.574711e-05	ci right 8.585065e-05	k: 87	n:1250000
PIK3CA   1250000 perm   892 sec   (1401 perm/sec)   p_kst 6.960000e-05   p_cons 6.592000e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.927678e-06	k: 0	n:1260000
Cons ci ratio: 1.355310e-01	ci left: 6.185191e-04	ci right 7.091985e-04	k: 835	n:1260000
KS ci ratio: 4.155043e-01	ci left: 5.601511e-05	ci right 8.604570e-05	k: 88	n:1260000
PIK3CA   1260000 perm   904 sec   (1393 perm/sec)   p_kst 6.984127e-05   p_cons 6.626984e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.904625e-06	k: 0	n:1270000
Cons ci ratio: 1.351276e-01	ci left: 6.174526e-04	ci right 7.076845e-04	k: 840	n:1270000
KS ci ratio: 4.226900e-01	ci left: 5.346095e-05	ci right 8.275826e-05	k: 85	n:1270000
PIK3CA   1270000 perm   917 sec   (1385 perm/sec)   p_kst 6.692913e-05   p_cons 6.614173e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.881933e-06	k: 0	n:1280000
Cons ci ratio: 1.347278e-01	ci left: 6.164031e-04	ci right 7.061938e-04	k: 845	n:1280000
KS ci ratio: 4.202537e-01	ci left: 5.374167e-05	ci right 8.297536e-05	k: 86	n:1280000
PIK3CA   1280000 perm   929 sec   (1378 perm/sec)   p_kst 6.718750e-05   p_cons 6.601563e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.859592e-06	k: 0	n:1290000
Cons ci ratio: 1.344105e-01	ci left: 6.146211e-04	ci right 7.039245e-04	k: 849	n:1290000
KS ci ratio: 4.202538e-01	ci left: 5.332506e-05	ci right 8.233215e-05	k: 86	n:1290000
PIK3CA   1290000 perm   941 sec   (1371 perm/sec)   p_kst 6.666667e-05   p_cons 6.581395e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.837596e-06	k: 0	n:1300000
Cons ci ratio: 1.334714e-01	ci left: 6.188148e-04	ci right 7.080495e-04	k: 861	n:1300000
KS ci ratio: 4.178591e-01	ci left: 5.360298e-05	ci right 8.254872e-05	k: 87	n:1300000
PIK3CA   1300000 perm   953 sec   (1364 perm/sec)   p_kst 6.692308e-05   p_cons 6.623077e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.815935e-06	k: 0	n:1310000
Cons ci ratio: 1.330861e-01	ci left: 6.177806e-04	ci right 7.065886e-04	k: 866	n:1310000
KS ci ratio: 4.155049e-01	ci left: 5.387711e-05	ci right 8.276154e-05	k: 88	n:1310000
PIK3CA   1310000 perm   965 sec   (1358 perm/sec)   p_kst 6.717557e-05   p_cons 6.610687e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.794602e-06	k: 0	n:1320000
Cons ci ratio: 1.326280e-01	ci left: 6.174948e-04	ci right 7.059321e-04	k: 872	n:1320000
KS ci ratio: 4.155050e-01	ci left: 5.346895e-05	ci right 8.213456e-05	k: 88	n:1320000
PIK3CA   1320000 perm   977 sec   (1351 perm/sec)   p_kst 6.666667e-05   p_cons 6.606061e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.773590e-06	k: 0	n:1330000
Cons ci ratio: 1.321746e-01	ci left: 6.172138e-04	ci right 7.052849e-04	k: 878	n:1330000
KS ci ratio: 4.131901e-01	ci left: 5.374042e-05	ci right 8.234685e-05	k: 89	n:1330000
PIK3CA   1330000 perm   989 sec   (1345 perm/sec)   p_kst 6.691729e-05   p_cons 6.601504e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.752891e-06	k: 0	n:1340000
Cons ci ratio: 1.318003e-01	ci left: 6.162159e-04	ci right 7.038761e-04	k: 883	n:1340000
KS ci ratio: 4.131903e-01	ci left: 5.333936e-05	ci right 8.173233e-05	k: 89	n:1340000
PIK3CA   1340000 perm   1001 sec   (1338 perm/sec)   p_kst 6.641791e-05   p_cons 6.589552e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.732500e-06	k: 0	n:1350000
Cons ci ratio: 1.315774e-01	ci left: 6.138003e-04	ci right 7.009577e-04	k: 886	n:1350000
KS ci ratio: 4.086742e-01	ci left: 5.427258e-05	ci right 8.276072e-05	k: 91	n:1350000
PIK3CA   1350000 perm   1013 sec   (1332 perm/sec)   p_kst 6.740741e-05   p_cons 6.562963e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.712408e-06	k: 0	n:1360000
Cons ci ratio: 1.312082e-01	ci left: 6.128426e-04	ci right 6.996009e-04	k: 891	n:1360000
KS ci ratio: 4.043030e-01	ci left: 5.519373e-05	ci right 8.377236e-05	k: 93	n:1360000
PIK3CA   1360000 perm   1026 sec   (1326 perm/sec)   p_kst 6.838235e-05   p_cons 6.551471e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.692609e-06	k: 0	n:1370000
Cons ci ratio: 1.306964e-01	ci left: 6.133114e-04	ci right 6.997711e-04	k: 898	n:1370000
KS ci ratio: 4.043031e-01	ci left: 5.479085e-05	ci right 8.316089e-05	k: 93	n:1370000
PIK3CA   1370000 perm   1039 sec   (1319 perm/sec)   p_kst 6.788321e-05   p_cons 6.554745e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.673097e-06	k: 0	n:1380000
Cons ci ratio: 1.303345e-01	ci left: 6.123720e-04	ci right 6.984417e-04	k: 903	n:1380000
KS ci ratio: 4.021695e-01	ci left: 5.504495e-05	ci right 8.335603e-05	k: 94	n:1380000
PIK3CA   1380000 perm   1052 sec   (1312 perm/sec)   p_kst 6.811594e-05   p_cons 6.543478e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.653867e-06	k: 0	n:1390000
Cons ci ratio: 1.297615e-01	ci left: 6.135347e-04	ci right 6.993594e-04	k: 911	n:1390000
KS ci ratio: 3.980017e-01	ci left: 5.594301e-05	ci right 8.433923e-05	k: 96	n:1390000
PIK3CA   1390000 perm   1065 sec   (1306 perm/sec)   p_kst 6.906475e-05   p_cons 6.553957e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.634910e-06	k: 0	n:1400000
Cons ci ratio: 1.296907e-01	ci left: 6.098433e-04	ci right 6.951016e-04	k: 912	n:1400000
KS ci ratio: 3.980018e-01	ci left: 5.554342e-05	ci right 8.373682e-05	k: 96	n:1400000
PIK3CA   1400000 perm   1077 sec   (1299 perm/sec)   p_kst 6.857143e-05   p_cons 6.514286e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.616223e-06	k: 0	n:1410000
Cons ci ratio: 1.290561e-01	ci left: 6.116946e-04	ci right 6.967612e-04	k: 921	n:1410000
KS ci ratio: 3.939609e-01	ci left: 5.642669e-05	ci right 8.470192e-05	k: 98	n:1410000
PIK3CA   1410000 perm   1091 sec   (1293 perm/sec)   p_kst 6.950355e-05   p_cons 6.531915e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.597799e-06	k: 0	n:1420000
Cons ci ratio: 1.286382e-01	ci left: 6.114760e-04	ci right 6.962159e-04	k: 927	n:1420000
KS ci ratio: 3.939610e-01	ci left: 5.602931e-05	ci right 8.410543e-05	k: 98	n:1420000
PIK3CA   1420000 perm   1104 sec   (1287 perm/sec)   p_kst 6.901408e-05   p_cons 6.528169e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.579633e-06	k: 0	n:1430000
Cons ci ratio: 1.284309e-01	ci left: 6.092304e-04	ci right 6.935126e-04	k: 930	n:1430000
KS ci ratio: 3.919862e-01	ci left: 5.626770e-05	ci right 8.428534e-05	k: 99	n:1430000
PIK3CA   1430000 perm   1117 sec   (1280 perm/sec)   p_kst 6.923077e-05   p_cons 6.503497e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.561719e-06	k: 0	n:1440000
Cons ci ratio: 1.279508e-01	ci left: 6.097049e-04	ci right 6.937134e-04	k: 937	n:1440000
KS ci ratio: 3.900408e-01	ci left: 5.650312e-05	ci right 8.446242e-05	k: 100	n:1440000
PIK3CA   1440000 perm   1130 sec   (1274 perm/sec)   p_kst 6.944444e-05   p_cons 6.506944e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.544052e-06	k: 0	n:1450000
Cons ci ratio: 1.275436e-01	ci left: 6.095057e-04	ci right 6.931993e-04	k: 943	n:1450000
KS ci ratio: 3.900409e-01	ci left: 5.611344e-05	ci right 8.387992e-05	k: 100	n:1450000
PIK3CA   1450000 perm   1143 sec   (1268 perm/sec)   p_kst 6.896552e-05   p_cons 6.503448e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.526627e-06	k: 0	n:1460000
Cons ci ratio: 1.269398e-01	ci left: 6.112992e-04	ci right 6.948118e-04	k: 952	n:1460000
KS ci ratio: 3.881241e-01	ci left: 5.634703e-05	ci right 8.405702e-05	k: 101	n:1460000
PIK3CA   1460000 perm   1157 sec   (1262 perm/sec)   p_kst 6.917808e-05   p_cons 6.520548e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.509439e-06	k: 0	n:1470000
Cons ci ratio: 1.262788e-01	ci left: 6.137280e-04	ci right 6.971032e-04	k: 962	n:1470000
KS ci ratio: 3.862354e-01	ci left: 5.657777e-05	ci right 8.423138e-05	k: 102	n:1470000
PIK3CA   1470000 perm   1170 sec   (1256 perm/sec)   p_kst 6.938776e-05   p_cons 6.544218e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.492483e-06	k: 0	n:1480000
Cons ci ratio: 1.261481e-01	ci left: 6.108898e-04	ci right 6.937871e-04	k: 964	n:1480000
KS ci ratio: 3.825391e-01	ci left: 5.741625e-05	ci right 8.514356e-05	k: 104	n:1480000
PIK3CA   1480000 perm   1184 sec   (1250 perm/sec)   p_kst 7.027027e-05   p_cons 6.513514e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.475755e-06	k: 0	n:1490000
Cons ci ratio: 1.255638e-01	ci left: 6.126400e-04	ci right 6.953611e-04	k: 973	n:1490000
KS ci ratio: 3.825392e-01	ci left: 5.703091e-05	ci right 8.457213e-05	k: 104	n:1490000
PIK3CA   1490000 perm   1198 sec   (1244 perm/sec)   p_kst 6.979866e-05   p_cons 6.530201e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.459250e-06	k: 0	n:1500000
Cons ci ratio: 1.251789e-01	ci left: 6.124303e-04	ci right 6.948508e-04	k: 979	n:1500000
KS ci ratio: 3.807305e-01	ci left: 5.725341e-05	ci right 8.473864e-05	k: 105	n:1500000
PIK3CA   1500000 perm   1212 sec   (1238 perm/sec)   p_kst 7.000000e-05   p_cons 6.526667e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.442964e-06	k: 0	n:1510000
Cons ci ratio: 1.249878e-01	ci left: 6.102990e-04	ci right 6.922981e-04	k: 982	n:1510000
KS ci ratio: 3.789472e-01	ci left: 5.747327e-05	ci right 8.490265e-05	k: 106	n:1510000
PIK3CA   1510000 perm   1225 sec   (1232 perm/sec)   p_kst 7.019868e-05   p_cons 6.503311e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.426891e-06	k: 0	n:1520000
Cons ci ratio: 1.244823e-01	ci left: 6.113829e-04	ci right 6.931707e-04	k: 990	n:1520000
KS ci ratio: 3.771887e-01	ci left: 5.769053e-05	ci right 8.506421e-05	k: 107	n:1520000
PIK3CA   1520000 perm   1239 sec   (1227 perm/sec)   p_kst 7.039474e-05   p_cons 6.513158e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.411029e-06	k: 0	n:1530000
Cons ci ratio: 1.242944e-01	ci left: 6.092866e-04	ci right 6.906620e-04	k: 993	n:1530000
KS ci ratio: 3.720563e-01	ci left: 5.908965e-05	ci right 8.665279e-05	k: 110	n:1530000
PIK3CA   1530000 perm   1253 sec   (1221 perm/sec)   p_kst 7.189542e-05   p_cons 6.490196e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.395373e-06	k: 0	n:1540000
Cons ci ratio: 1.239830e-01	ci left: 6.084762e-04	ci right 6.895248e-04	k: 998	n:1540000
KS ci ratio: 3.720564e-01	ci left: 5.870595e-05	ci right 8.609011e-05	k: 110	n:1540000
PIK3CA   1540000 perm   1268 sec   (1215 perm/sec)   p_kst 7.142857e-05   p_cons 6.480519e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.379919e-06	k: 0	n:1550000
Cons ci ratio: 1.237974e-01	ci left: 6.064260e-04	ci right 6.870717e-04	k: 1001	n:1550000
KS ci ratio: 3.720565e-01	ci left: 5.832720e-05	ci right 8.553470e-05	k: 110	n:1550000
PIK3CA   1550000 perm   1282 sec   (1209 perm/sec)   p_kst 7.096774e-05   p_cons 6.458065e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.364664e-06	k: 0	n:1560000
Cons ci ratio: 1.235512e-01	ci left: 6.050234e-04	ci right 6.853108e-04	k: 1005	n:1560000
KS ci ratio: 3.720566e-01	ci left: 5.795331e-05	ci right 8.498640e-05	k: 110	n:1560000
PIK3CA   1560000 perm   1296 sec   (1204 perm/sec)   p_kst 7.051282e-05   p_cons 6.442308e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.349602e-06	k: 0	n:1570000
Cons ci ratio: 1.229415e-01	ci left: 6.073428e-04	ci right 6.875114e-04	k: 1015	n:1570000
KS ci ratio: 3.703919e-01	ci left: 5.816170e-05	ci right 8.514119e-05	k: 111	n:1570000
PIK3CA   1570000 perm   1310 sec   (1198 perm/sec)   p_kst 7.070064e-05   p_cons 6.464968e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.334731e-06	k: 0	n:1580000
Cons ci ratio: 1.225201e-01	ci left: 6.077933e-04	ci right 6.877264e-04	k: 1022	n:1580000
KS ci ratio: 3.687493e-01	ci left: 5.836772e-05	ci right 8.529375e-05	k: 112	n:1580000
PIK3CA   1580000 perm   1325 sec   (1193 perm/sec)   p_kst 7.088608e-05   p_cons 6.468354e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.320047e-06	k: 0	n:1590000
Cons ci ratio: 1.220438e-01	ci left: 6.088482e-04	ci right 6.885863e-04	k: 1030	n:1590000
KS ci ratio: 3.687494e-01	ci left: 5.800063e-05	ci right 8.475732e-05	k: 112	n:1590000
PIK3CA   1590000 perm   1339 sec   (1187 perm/sec)   p_kst 7.044025e-05   p_cons 6.477987e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.305547e-06	k: 0	n:1600000
Cons ci ratio: 1.217490e-01	ci left: 6.080726e-04	ci right 6.875029e-04	k: 1035	n:1600000
KS ci ratio: 3.671284e-01	ci left: 5.820534e-05	ci right 8.491012e-05	k: 113	n:1600000
PIK3CA   1600000 perm   1354 sec   (1182 perm/sec)   p_kst 7.062500e-05   p_cons 6.468750e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.291227e-06	k: 0	n:1610000
Cons ci ratio: 1.213397e-01	ci left: 6.085114e-04	ci right 6.877126e-04	k: 1042	n:1610000
KS ci ratio: 3.671285e-01	ci left: 5.784381e-05	ci right 8.438273e-05	k: 113	n:1610000
PIK3CA   1610000 perm   1369 sec   (1176 perm/sec)   p_kst 7.018634e-05   p_cons 6.472050e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.277083e-06	k: 0	n:1620000
Cons ci ratio: 1.208195e-01	ci left: 6.101425e-04	ci right 6.891912e-04	k: 1051	n:1620000
KS ci ratio: 3.639497e-01	ci left: 5.860793e-05	ci right 8.520932e-05	k: 115	n:1620000
PIK3CA   1620000 perm   1384 sec   (1171 perm/sec)   p_kst 7.098765e-05   p_cons 6.487654e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.263114e-06	k: 0	n:1630000
Cons ci ratio: 1.204195e-01	ci left: 6.105642e-04	ci right 6.893870e-04	k: 1058	n:1630000
KS ci ratio: 3.623910e-01	ci left: 5.880589e-05	ci right 8.535581e-05	k: 116	n:1630000
PIK3CA   1630000 perm   1398 sec   (1166 perm/sec)   p_kst 7.116564e-05   p_cons 6.490798e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.249314e-06	k: 0	n:1640000
Cons ci ratio: 1.198548e-01	ci left: 6.127556e-04	ci right 6.914641e-04	k: 1068	n:1640000
KS ci ratio: 3.608522e-01	ci left: 5.900168e-05	ci right 8.550027e-05	k: 117	n:1640000
PIK3CA   1640000 perm   1413 sec   (1161 perm/sec)   p_kst 7.134146e-05   p_cons 6.512195e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.235682e-06	k: 0	n:1650000
Cons ci ratio: 1.194643e-01	ci left: 6.131574e-04	ci right 6.916428e-04	k: 1075	n:1650000
KS ci ratio: 3.608522e-01	ci left: 5.864409e-05	ci right 8.498209e-05	k: 117	n:1650000
PIK3CA   1650000 perm   1427 sec   (1156 perm/sec)   p_kst 7.090909e-05   p_cons 6.515152e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.222214e-06	k: 0	n:1660000
Cons ci ratio: 1.189677e-01	ci left: 6.147237e-04	ci right 6.930595e-04	k: 1084	n:1660000
KS ci ratio: 3.593328e-01	ci left: 5.883873e-05	ci right 8.512683e-05	k: 118	n:1660000
PIK3CA   1660000 perm   1442 sec   (1151 perm/sec)   p_kst 7.108434e-05   p_cons 6.530120e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.208907e-06	k: 0	n:1670000
Cons ci ratio: 1.185315e-01	ci left: 6.156909e-04	ci right 6.938420e-04	k: 1092	n:1670000
KS ci ratio: 3.578324e-01	ci left: 5.903126e-05	ci right 8.526961e-05	k: 119	n:1670000
PIK3CA   1670000 perm   1457 sec   (1146 perm/sec)   p_kst 7.125749e-05   p_cons 6.538922e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.195759e-06	k: 0	n:1680000
Cons ci ratio: 1.183693e-01	ci left: 6.137588e-04	ci right 6.915507e-04	k: 1095	n:1680000
KS ci ratio: 3.578325e-01	ci left: 5.867988e-05	ci right 8.476205e-05	k: 119	n:1680000
PIK3CA   1680000 perm   1471 sec   (1142 perm/sec)   p_kst 7.083333e-05   p_cons 6.517857e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.182767e-06	k: 0	n:1690000
Cons ci ratio: 1.181002e-01	ci left: 6.129982e-04	ci right 6.905047e-04	k: 1100	n:1690000
KS ci ratio: 3.578326e-01	ci left: 5.833266e-05	ci right 8.426051e-05	k: 119	n:1690000
PIK3CA   1690000 perm   1486 sec   (1137 perm/sec)   p_kst 7.041420e-05   p_cons 6.508876e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.169927e-06	k: 0	n:1700000
Cons ci ratio: 1.177266e-01	ci left: 6.133885e-04	ci right 6.906820e-04	k: 1107	n:1700000
KS ci ratio: 3.578327e-01	ci left: 5.798953e-05	ci right 8.376486e-05	k: 119	n:1700000
PIK3CA   1700000 perm   1501 sec   (1133 perm/sec)   p_kst 7.000000e-05   p_cons 6.511765e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.157237e-06	k: 0	n:1710000
Cons ci ratio: 1.174619e-01	ci left: 6.126394e-04	ci right 6.896528e-04	k: 1112	n:1710000
KS ci ratio: 3.563509e-01	ci left: 5.818274e-05	ci right 8.391205e-05	k: 120	n:1710000
PIK3CA   1710000 perm   1516 sec   (1128 perm/sec)   p_kst 7.017544e-05   p_cons 6.502924e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.144695e-06	k: 0	n:1720000
Cons ci ratio: 1.171990e-01	ci left: 6.118992e-04	ci right 6.886355e-04	k: 1117	n:1720000
KS ci ratio: 3.548874e-01	ci left: 5.837393e-05	ci right 8.405731e-05	k: 121	n:1720000
PIK3CA   1720000 perm   1531 sec   (1124 perm/sec)   p_kst 7.034884e-05   p_cons 6.494186e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.132298e-06	k: 0	n:1730000
Cons ci ratio: 1.167819e-01	ci left: 6.128512e-04	ci right 6.894145e-04	k: 1125	n:1730000
KS ci ratio: 3.534418e-01	ci left: 5.856312e-05	ci right 8.420068e-05	k: 122	n:1730000
PIK3CA   1730000 perm   1546 sec   (1119 perm/sec)   p_kst 7.052023e-05   p_cons 6.502890e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.120043e-06	k: 0	n:1740000
Cons ci ratio: 1.164205e-01	ci left: 6.132347e-04	ci right 6.895926e-04	k: 1132	n:1740000
KS ci ratio: 3.520137e-01	ci left: 5.875035e-05	ci right 8.434219e-05	k: 123	n:1740000
PIK3CA   1740000 perm   1561 sec   (1115 perm/sec)   p_kst 7.068966e-05   p_cons 6.505747e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.107929e-06	k: 0	n:1750000
Cons ci ratio: 1.161135e-01	ci left: 6.130594e-04	ci right 6.891803e-04	k: 1138	n:1750000
KS ci ratio: 3.506028e-01	ci left: 5.893564e-05	ci right 8.448189e-05	k: 124	n:1750000
PIK3CA   1750000 perm   1577 sec   (1110 perm/sec)   p_kst 7.085714e-05   p_cons 6.502857e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.095952e-06	k: 0	n:1760000
Cons ci ratio: 1.157078e-01	ci left: 6.139898e-04	ci right 6.899417e-04	k: 1146	n:1760000
KS ci ratio: 3.492088e-01	ci left: 5.911903e-05	ci right 8.461980e-05	k: 125	n:1760000
PIK3CA   1760000 perm   1593 sec   (1105 perm/sec)   p_kst 7.102273e-05   p_cons 6.511364e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.084111e-06	k: 0	n:1770000
Cons ci ratio: 1.152564e-01	ci left: 6.154588e-04	ci right 6.912752e-04	k: 1155	n:1770000
KS ci ratio: 3.492088e-01	ci left: 5.878502e-05	ci right 8.414172e-05	k: 125	n:1770000
PIK3CA   1770000 perm   1608 sec   (1101 perm/sec)   p_kst 7.062147e-05   p_cons 6.525424e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.072402e-06	k: 0	n:1780000
Cons ci ratio: 1.148103e-01	ci left: 6.169119e-04	ci right 6.925932e-04	k: 1164	n:1780000
KS ci ratio: 3.492089e-01	ci left: 5.845477e-05	ci right 8.366902e-05	k: 125	n:1780000
PIK3CA   1780000 perm   1624 sec   (1096 perm/sec)   p_kst 7.022472e-05   p_cons 6.539326e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.060824e-06	k: 0	n:1790000
Cons ci ratio: 1.146629e-01	ci left: 6.150933e-04	ci right 6.904481e-04	k: 1167	n:1790000
KS ci ratio: 3.492090e-01	ci left: 5.812820e-05	ci right 8.320160e-05	k: 125	n:1790000
PIK3CA   1790000 perm   1640 sec   (1092 perm/sec)   p_kst 6.983240e-05   p_cons 6.519553e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.049375e-06	k: 0	n:1800000
Cons ci ratio: 1.144671e-01	ci left: 6.138347e-04	ci right 6.888981e-04	k: 1171	n:1800000
KS ci ratio: 3.492090e-01	ci left: 5.780526e-05	ci right 8.273937e-05	k: 125	n:1800000
PIK3CA   1800000 perm   1656 sec   (1087 perm/sec)   p_kst 6.944444e-05   p_cons 6.505556e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.038053e-06	k: 0	n:1810000
Cons ci ratio: 1.141268e-01	ci left: 6.142002e-04	ci right 6.890700e-04	k: 1178	n:1810000
KS ci ratio: 3.492091e-01	ci left: 5.748590e-05	ci right 8.228225e-05	k: 125	n:1810000
PIK3CA   1810000 perm   1672 sec   (1083 perm/sec)   p_kst 6.906077e-05   p_cons 6.508287e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.026855e-06	k: 0	n:1820000
Cons ci ratio: 1.136457e-01	ci left: 6.161635e-04	ci right 6.909348e-04	k: 1188	n:1820000
KS ci ratio: 3.464700e-01	ci left: 5.817295e-05	ci right 8.302467e-05	k: 127	n:1820000
PIK3CA   1820000 perm   1688 sec   (1078 perm/sec)   p_kst 6.978022e-05   p_cons 6.527473e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.015779e-06	k: 0	n:1830000
Cons ci ratio: 1.130764e-01	ci left: 6.191679e-04	ci right 6.939024e-04	k: 1200	n:1830000
KS ci ratio: 3.437944e-01	ci left: 5.885324e-05	ci right 8.375824e-05	k: 129	n:1830000
PIK3CA   1830000 perm   1705 sec   (1074 perm/sec)   p_kst 7.049180e-05   p_cons 6.557377e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.004824e-06	k: 0	n:1840000
Cons ci ratio: 1.127016e-01	ci left: 6.200280e-04	ci right 6.946017e-04	k: 1208	n:1840000
KS ci ratio: 3.437945e-01	ci left: 5.853338e-05	ci right 8.330304e-05	k: 129	n:1840000
PIK3CA   1840000 perm   1721 sec   (1069 perm/sec)   p_kst 7.010870e-05   p_cons 6.565217e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.993987e-06	k: 0	n:1850000
Cons ci ratio: 1.126552e-01	ci left: 6.172017e-04	ci right 6.914029e-04	k: 1209	n:1850000
KS ci ratio: 3.437946e-01	ci left: 5.821698e-05	ci right 8.285275e-05	k: 129	n:1850000
PIK3CA   1850000 perm   1738 sec   (1065 perm/sec)   p_kst 6.972973e-05   p_cons 6.535135e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.983267e-06	k: 0	n:1860000
Cons ci ratio: 1.123307e-01	ci left: 6.175410e-04	ci right 6.915550e-04	k: 1216	n:1860000
KS ci ratio: 3.411800e-01	ci left: 5.888679e-05	ci right 8.357470e-05	k: 131	n:1860000
PIK3CA   1860000 perm   1754 sec   (1060 perm/sec)   p_kst 7.043011e-05   p_cons 6.537634e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.972661e-06	k: 0	n:1870000
Cons ci ratio: 1.121007e-01	ci left: 6.168374e-04	ci right 6.906056e-04	k: 1221	n:1870000
KS ci ratio: 3.411801e-01	ci left: 5.857188e-05	ci right 8.312778e-05	k: 131	n:1870000
PIK3CA   1870000 perm   1771 sec   (1056 perm/sec)   p_kst 7.005348e-05   p_cons 6.529412e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.962168e-06	k: 0	n:1880000
Cons ci ratio: 1.117810e-01	ci left: 6.171755e-04	ci right 6.907598e-04	k: 1228	n:1880000
KS ci ratio: 3.411801e-01	ci left: 5.826033e-05	ci right 8.268561e-05	k: 131	n:1880000
PIK3CA   1880000 perm   1788 sec   (1052 perm/sec)   p_kst 6.968085e-05   p_cons 6.531915e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.951786e-06	k: 0	n:1890000
Cons ci ratio: 1.113289e-01	ci left: 6.190534e-04	ci right 6.925435e-04	k: 1238	n:1890000
KS ci ratio: 3.386243e-01	ci left: 5.891996e-05	ci right 8.339630e-05	k: 133	n:1890000
PIK3CA   1890000 perm   1804 sec   (1048 perm/sec)   p_kst 7.037037e-05   p_cons 6.550265e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.941514e-06	k: 0	n:1900000
Cons ci ratio: 1.110157e-01	ci left: 6.193770e-04	ci right 6.926852e-04	k: 1245	n:1900000
KS ci ratio: 3.386244e-01	ci left: 5.860986e-05	ci right 8.295738e-05	k: 133	n:1900000
PIK3CA   1900000 perm   1821 sec   (1043 perm/sec)   p_kst 7.000000e-05   p_cons 6.552632e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.931349e-06	k: 0	n:1910000
Cons ci ratio: 1.107494e-01	ci left: 6.191884e-04	ci right 6.922870e-04	k: 1251	n:1910000
KS ci ratio: 3.386245e-01	ci left: 5.830300e-05	ci right 8.252305e-05	k: 133	n:1910000
PIK3CA   1910000 perm   1838 sec   (1039 perm/sec)   p_kst 6.963351e-05   p_cons 6.549738e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.921290e-06	k: 0	n:1920000
Cons ci ratio: 1.104411e-01	ci left: 6.195085e-04	ci right 6.924280e-04	k: 1258	n:1920000
KS ci ratio: 3.373679e-01	ci left: 5.847597e-05	ci right 8.265811e-05	k: 134	n:1920000
PIK3CA   1920000 perm   1855 sec   (1035 perm/sec)   p_kst 6.979167e-05   p_cons 6.552083e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.911335e-06	k: 0	n:1930000
Cons ci ratio: 1.101353e-01	ci left: 6.198255e-04	ci right 6.925672e-04	k: 1265	n:1930000
KS ci ratio: 3.373680e-01	ci left: 5.817298e-05	ci right 8.222983e-05	k: 134	n:1930000
PIK3CA   1930000 perm   1872 sec   (1031 perm/sec)   p_kst 6.943005e-05   p_cons 6.554404e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.901482e-06	k: 0	n:1940000
Cons ci ratio: 1.098753e-01	ci left: 6.196382e-04	ci right 6.921751e-04	k: 1271	n:1940000
KS ci ratio: 3.361254e-01	ci left: 5.834500e-05	ci right 8.236485e-05	k: 135	n:1940000
PIK3CA   1940000 perm   1889 sec   (1027 perm/sec)   p_kst 6.958763e-05   p_cons 6.551546e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.891731e-06	k: 0	n:1950000
Cons ci ratio: 1.098323e-01	ci left: 6.169593e-04	ci right 6.891525e-04	k: 1272	n:1950000
KS ci ratio: 3.348964e-01	ci left: 5.851542e-05	ci right 8.249833e-05	k: 136	n:1950000
PIK3CA   1950000 perm   1907 sec   (1023 perm/sec)   p_kst 6.974359e-05   p_cons 6.523077e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.882080e-06	k: 0	n:1960000
Cons ci ratio: 1.096172e-01	ci left: 6.162925e-04	ci right 6.882574e-04	k: 1277	n:1960000
KS ci ratio: 3.336807e-01	ci left: 5.868426e-05	ci right 8.263029e-05	k: 137	n:1960000
PIK3CA   1960000 perm   1924 sec   (1019 perm/sec)   p_kst 6.989796e-05   p_cons 6.515306e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.872526e-06	k: 0	n:1970000
Cons ci ratio: 1.094462e-01	ci left: 6.151389e-04	ci right 6.868498e-04	k: 1281	n:1970000
KS ci ratio: 3.324782e-01	ci left: 5.885154e-05	ci right 8.276076e-05	k: 138	n:1970000
PIK3CA   1970000 perm   1941 sec   (1015 perm/sec)   p_kst 7.005076e-05   p_cons 6.502538e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.863069e-06	k: 0	n:1980000
Cons ci ratio: 1.093184e-01	ci left: 6.135058e-04	ci right 6.849375e-04	k: 1284	n:1980000
KS ci ratio: 3.301117e-01	ci left: 5.948041e-05	ci right 8.343659e-05	k: 140	n:1980000
PIK3CA   1980000 perm   1959 sec   (1011 perm/sec)   p_kst 7.070707e-05   p_cons 6.484848e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.853707e-06	k: 0	n:1990000
Cons ci ratio: 1.090641e-01	ci left: 6.133556e-04	ci right 6.845930e-04	k: 1290	n:1990000
KS ci ratio: 3.277950e-01	ci left: 6.010355e-05	ci right 8.410503e-05	k: 142	n:1990000
PIK3CA   1990000 perm   1976 sec   (1007 perm/sec)   p_kst 7.135678e-05   p_cons 6.482412e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.844438e-06	k: 0	n:2000000
Cons ci ratio: 1.088116e-01	ci left: 6.132071e-04	ci right 6.842517e-04	k: 1296	n:2000000
KS ci ratio: 3.266548e-01	ci left: 6.026196e-05	ci right 8.422543e-05	k: 143	n:2000000
PIK3CA   2000000 perm   1994 sec   (1003 perm/sec)   p_kst 7.150000e-05   p_cons 6.480000e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.835262e-06	k: 0	n:2010000
Cons ci ratio: 1.086025e-01	ci left: 6.125762e-04	ci right 6.834027e-04	k: 1301	n:2010000
KS ci ratio: 3.266549e-01	ci left: 5.996215e-05	ci right 8.380640e-05	k: 143	n:2010000
PIK3CA   2010000 perm   2011 sec   (999 perm/sec)   p_kst 7.114428e-05   p_cons 6.472637e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.826176e-06	k: 0	n:2020000
Cons ci ratio: 1.082703e-01	ci left: 6.133967e-04	ci right 6.840872e-04	k: 1309	n:2020000
KS ci ratio: 3.266549e-01	ci left: 5.966530e-05	ci right 8.339152e-05	k: 143	n:2020000
PIK3CA   2020000 perm   2028 sec   (996 perm/sec)   p_kst 7.079208e-05   p_cons 6.480198e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.817180e-06	k: 0	n:2030000
Cons ci ratio: 1.080643e-01	ci left: 6.127714e-04	ci right 6.832470e-04	k: 1314	n:2030000
KS ci ratio: 3.266550e-01	ci left: 5.937139e-05	ci right 8.298073e-05	k: 143	n:2030000
PIK3CA   2030000 perm   2046 sec   (992 perm/sec)   p_kst 7.044335e-05   p_cons 6.472906e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.808273e-06	k: 0	n:2040000
Cons ci ratio: 1.079414e-01	ci left: 6.111985e-04	ci right 6.814081e-04	k: 1317	n:2040000
KS ci ratio: 3.266551e-01	ci left: 5.908035e-05	ci right 8.257396e-05	k: 143	n:2040000
PIK3CA   2040000 perm   2063 sec   (989 perm/sec)   p_kst 7.009804e-05   p_cons 6.455882e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.799452e-06	k: 0	n:2050000
Cons ci ratio: 1.077780e-01	ci left: 6.101156e-04	ci right 6.800880e-04	k: 1321	n:2050000
KS ci ratio: 3.266551e-01	ci left: 5.879215e-05	ci right 8.217117e-05	k: 143	n:2050000
PIK3CA   2050000 perm   2081 sec   (985 perm/sec)   p_kst 6.975610e-05   p_cons 6.443902e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.790717e-06	k: 0	n:2060000
Cons ci ratio: 1.075748e-01	ci left: 6.095157e-04	ci right 6.792792e-04	k: 1326	n:2060000
KS ci ratio: 3.266552e-01	ci left: 5.850675e-05	ci right 8.177228e-05	k: 143	n:2060000
PIK3CA   2060000 perm   2099 sec   (982 perm/sec)   p_kst 6.941748e-05   p_cons 6.436893e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.782066e-06	k: 0	n:2070000
Cons ci ratio: 1.074535e-01	ci left: 6.079814e-04	ci right 6.774859e-04	k: 1329	n:2070000
KS ci ratio: 3.255268e-01	ci left: 5.866766e-05	ci right 8.189974e-05	k: 144	n:2070000
PIK3CA   2070000 perm   2117 sec   (978 perm/sec)   p_kst 6.956522e-05   p_cons 6.420290e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.773498e-06	k: 0	n:2080000
Cons ci ratio: 1.072521e-01	ci left: 6.073977e-04	ci right 6.766971e-04	k: 1334	n:2080000
KS ci ratio: 3.255269e-01	ci left: 5.838560e-05	ci right 8.150600e-05	k: 144	n:2080000
PIK3CA   2080000 perm   2135 sec   (974 perm/sec)   p_kst 6.923077e-05   p_cons 6.413462e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.765013e-06	k: 0	n:2090000
Cons ci ratio: 1.068526e-01	ci left: 6.091481e-04	ci right 6.783720e-04	k: 1344	n:2090000
KS ci ratio: 3.244101e-01	ci left: 5.854569e-05	ci right 8.163338e-05	k: 145	n:2090000
PIK3CA   2090000 perm   2153 sec   (971 perm/sec)   p_kst 6.937799e-05   p_cons 6.430622e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.756608e-06	k: 0	n:2100000
Cons ci ratio: 1.066546e-01	ci left: 6.085648e-04	ci right 6.775862e-04	k: 1349	n:2100000
KS ci ratio: 3.244102e-01	ci left: 5.826690e-05	ci right 8.124465e-05	k: 145	n:2100000
PIK3CA   2100000 perm   2171 sec   (967 perm/sec)   p_kst 6.904762e-05   p_cons 6.423810e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.748283e-06	k: 0	n:2110000
Cons ci ratio: 1.064576e-01	ci left: 6.079871e-04	ci right 6.768077e-04	k: 1354	n:2110000
KS ci ratio: 3.233048e-01	ci left: 5.842616e-05	ci right 8.137193e-05	k: 146	n:2110000
PIK3CA   2110000 perm   2189 sec   (964 perm/sec)   p_kst 6.919431e-05   p_cons 6.417062e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.740036e-06	k: 0	n:2120000
Cons ci ratio: 1.061058e-01	ci left: 6.092517e-04	ci right 6.779733e-04	k: 1363	n:2120000
KS ci ratio: 3.233049e-01	ci left: 5.815056e-05	ci right 8.098811e-05	k: 146	n:2120000
PIK3CA   2120000 perm   2207 sec   (961 perm/sec)   p_kst 6.886792e-05   p_cons 6.429245e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.731867e-06	k: 0	n:2130000
Cons ci ratio: 1.059119e-01	ci left: 6.086765e-04	ci right 6.772000e-04	k: 1368	n:2130000
KS ci ratio: 3.233049e-01	ci left: 5.787755e-05	ci right 8.060788e-05	k: 146	n:2130000
PIK3CA   2130000 perm   2225 sec   (957 perm/sec)   p_kst 6.854460e-05   p_cons 6.422535e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.723774e-06	k: 0	n:2140000
Cons ci ratio: 1.055654e-01	ci left: 6.099267e-04	ci right 6.783522e-04	k: 1377	n:2140000
KS ci ratio: 3.211277e-01	ci left: 5.846610e-05	ci right 8.124111e-05	k: 148	n:2140000
PIK3CA   2140000 perm   2243 sec   (954 perm/sec)   p_kst 6.915888e-05   p_cons 6.434579e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.715756e-06	k: 0	n:2150000
Cons ci ratio: 1.050708e-01	ci left: 6.129771e-04	ci right 6.814028e-04	k: 1390	n:2150000
KS ci ratio: 3.211277e-01	ci left: 5.819416e-05	ci right 8.086325e-05	k: 148	n:2150000
PIK3CA   2150000 perm   2262 sec   (951 perm/sec)   p_kst 6.883721e-05   p_cons 6.465116e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.707813e-06	k: 0	n:2160000
Cons ci ratio: 1.046950e-01	ci left: 6.146475e-04	ci right 6.829991e-04	k: 1400	n:2160000
KS ci ratio: 3.211278e-01	ci left: 5.792475e-05	ci right 8.048889e-05	k: 148	n:2160000
PIK3CA   2160000 perm   2281 sec   (947 perm/sec)   p_kst 6.851852e-05   p_cons 6.481481e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.699943e-06	k: 0	n:2170000
Cons ci ratio: 1.044716e-01	ci left: 6.145076e-04	ci right 6.826889e-04	k: 1406	n:2170000
KS ci ratio: 3.200555e-01	ci left: 5.808156e-05	ci right 8.061576e-05	k: 149	n:2170000
PIK3CA   2170000 perm   2300 sec   (944 perm/sec)   p_kst 6.866359e-05   p_cons 6.479263e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.692145e-06	k: 0	n:2180000
Cons ci ratio: 1.042865e-01	ci left: 6.139225e-04	ci right 6.819108e-04	k: 1411	n:2180000
KS ci ratio: 3.200556e-01	ci left: 5.781513e-05	ci right 8.024596e-05	k: 149	n:2180000
PIK3CA   2180000 perm   2318 sec   (940 perm/sec)   p_kst 6.834862e-05   p_cons 6.472477e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.684418e-06	k: 0	n:2190000
Cons ci ratio: 1.040289e-01	ci left: 6.142323e-04	ci right 6.820766e-04	k: 1418	n:2190000
KS ci ratio: 3.189940e-01	ci left: 5.797114e-05	ci right 8.037266e-05	k: 150	n:2190000
PIK3CA   2190000 perm   2337 sec   (937 perm/sec)   p_kst 6.849315e-05   p_cons 6.474886e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.676762e-06	k: 0	n:2200000
Cons ci ratio: 1.037732e-01	ci left: 6.145394e-04	ci right 6.822407e-04	k: 1425	n:2200000
KS ci ratio: 3.189941e-01	ci left: 5.770764e-05	ci right 8.000733e-05	k: 150	n:2200000
PIK3CA   2200000 perm   2355 sec   (934 perm/sec)   p_kst 6.818182e-05   p_cons 6.477273e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.669175e-06	k: 0	n:2210000
Cons ci ratio: 1.035195e-01	ci left: 6.148440e-04	ci right 6.824032e-04	k: 1432	n:2210000
KS ci ratio: 3.189941e-01	ci left: 5.744651e-05	ci right 7.964531e-05	k: 150	n:2210000
PIK3CA   2210000 perm   2374 sec   (931 perm/sec)   p_kst 6.787330e-05   p_cons 6.479638e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.661656e-06	k: 0	n:2220000
Cons ci ratio: 1.033034e-01	ci left: 6.147073e-04	ci right 6.821019e-04	k: 1438	n:2220000
KS ci ratio: 3.179430e-01	ci left: 5.760219e-05	ci right 7.977288e-05	k: 151	n:2220000
PIK3CA   2220000 perm   2392 sec   (928 perm/sec)   p_kst 6.801802e-05   p_cons 6.477477e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.654205e-06	k: 0	n:2230000
Cons ci ratio: 1.030174e-01	ci left: 6.154456e-04	ci right 6.827231e-04	k: 1446	n:2230000
KS ci ratio: 3.179431e-01	ci left: 5.734389e-05	ci right 7.941516e-05	k: 151	n:2230000
PIK3CA   2230000 perm   2411 sec   (925 perm/sec)   p_kst 6.771300e-05   p_cons 6.484305e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.646820e-06	k: 0	n:2240000
Cons ci ratio: 1.028045e-01	ci left: 6.153077e-04	ci right 6.824227e-04	k: 1452	n:2240000
KS ci ratio: 3.179431e-01	ci left: 5.708789e-05	ci right 7.906063e-05	k: 151	n:2240000
PIK3CA   2240000 perm   2430 sec   (922 perm/sec)   p_kst 6.741071e-05   p_cons 6.482143e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.639501e-06	k: 0	n:2250000
Cons ci ratio: 1.025226e-01	ci left: 6.160373e-04	ci right 6.830365e-04	k: 1460	n:2250000
KS ci ratio: 3.158717e-01	ci left: 5.765236e-05	ci right 7.966859e-05	k: 153	n:2250000
PIK3CA   2250000 perm   2449 sec   (919 perm/sec)   p_kst 6.800000e-05   p_cons 6.488889e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.632246e-06	k: 0	n:2260000
Cons ci ratio: 1.024526e-01	ci left: 6.141737e-04	ci right 6.809219e-04	k: 1462	n:2260000
KS ci ratio: 3.158718e-01	ci left: 5.739726e-05	ci right 7.931608e-05	k: 153	n:2260000
PIK3CA   2260000 perm   2468 sec   (916 perm/sec)   p_kst 6.769912e-05   p_cons 6.469027e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.625056e-06	k: 0	n:2270000
Cons ci ratio: 1.023129e-01	ci left: 6.131851e-04	ci right 6.797295e-04	k: 1466	n:2270000
KS ci ratio: 3.158718e-01	ci left: 5.714441e-05	ci right 7.896667e-05	k: 153	n:2270000
PIK3CA   2270000 perm   2488 sec   (913 perm/sec)   p_kst 6.740088e-05   p_cons 6.458150e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.617928e-06	k: 0	n:2280000
Cons ci ratio: 1.020697e-01	ci left: 6.134874e-04	ci right 6.798968e-04	k: 1473	n:2280000
KS ci ratio: 3.158719e-01	ci left: 5.689378e-05	ci right 7.862033e-05	k: 153	n:2280000
PIK3CA   2280000 perm   2507 sec   (910 perm/sec)   p_kst 6.710526e-05   p_cons 6.460526e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.610863e-06	k: 0	n:2290000
Cons ci ratio: 1.019315e-01	ci left: 6.125106e-04	ci right 6.787191e-04	k: 1477	n:2290000
KS ci ratio: 3.118476e-01	ci left: 5.825450e-05	ci right 8.016086e-05	k: 157	n:2290000
PIK3CA   2290000 perm   2526 sec   (906 perm/sec)   p_kst 6.855895e-05   p_cons 6.449782e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.603859e-06	k: 0	n:2300000
Cons ci ratio: 1.016225e-01	ci left: 6.136609e-04	ci right 6.797807e-04	k: 1486	n:2300000
KS ci ratio: 3.118477e-01	ci left: 5.800122e-05	ci right 7.981233e-05	k: 157	n:2300000
PIK3CA   2300000 perm   2546 sec   (903 perm/sec)   p_kst 6.826087e-05   p_cons 6.460870e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.596916e-06	k: 0	n:2310000
Cons ci ratio: 1.014862e-01	ci left: 6.126920e-04	ci right 6.786136e-04	k: 1490	n:2310000
KS ci ratio: 3.108655e-01	ci left: 5.814921e-05	ci right 7.993344e-05	k: 158	n:2310000
PIK3CA   2310000 perm   2565 sec   (900 perm/sec)   p_kst 6.839827e-05   p_cons 6.450216e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.590033e-06	k: 0	n:2320000
Cons ci ratio: 1.011475e-01	ci left: 6.142522e-04	ci right 6.801080e-04	k: 1500	n:2320000
KS ci ratio: 3.108655e-01	ci left: 5.789857e-05	ci right 7.958890e-05	k: 158	n:2320000
PIK3CA   2320000 perm   2585 sec   (897 perm/sec)   p_kst 6.810345e-05   p_cons 6.465517e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.583209e-06	k: 0	n:2330000
Cons ci ratio: 1.009459e-01	ci left: 6.141260e-04	ci right 6.798292e-04	k: 1506	n:2330000
KS ci ratio: 3.108655e-01	ci left: 5.765007e-05	ci right 7.924732e-05	k: 158	n:2330000
PIK3CA   2330000 perm   2605 sec   (894 perm/sec)   p_kst 6.781116e-05   p_cons 6.463519e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.576443e-06	k: 0	n:2340000
Cons ci ratio: 1.008123e-01	ci left: 6.131678e-04	ci right 6.786765e-04	k: 1510	n:2340000
KS ci ratio: 3.098925e-01	ci left: 5.779778e-05	ci right 7.936918e-05	k: 159	n:2340000
PIK3CA   2340000 perm   2625 sec   (891 perm/sec)   p_kst 6.794872e-05   p_cons 6.452991e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.569735e-06	k: 0	n:2350000
Cons ci ratio: 1.006127e-01	ci left: 6.130474e-04	ci right 6.784060e-04	k: 1516	n:2350000
KS ci ratio: 3.098926e-01	ci left: 5.755183e-05	ci right 7.903144e-05	k: 159	n:2350000
PIK3CA   2350000 perm   2645 sec   (889 perm/sec)   p_kst 6.765957e-05   p_cons 6.451064e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.563083e-06	k: 0	n:2360000
Cons ci ratio: 1.002827e-01	ci left: 6.145806e-04	ci right 6.798751e-04	k: 1526	n:2360000
KS ci ratio: 3.079737e-01	ci left: 5.808974e-05	ci right 7.960951e-05	k: 161	n:2360000
PIK3CA   2360000 perm   2664 sec   (886 perm/sec)   p_kst 6.822034e-05   p_cons 6.466102e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.556488e-06	k: 0	n:2370000
Cons ci ratio: 1.000862e-01	ci left: 6.144557e-04	ci right 6.796015e-04	k: 1532	n:2370000
KS ci ratio: 3.079737e-01	ci left: 5.784463e-05	ci right 7.927360e-05	k: 161	n:2370000
PIK3CA   2370000 perm   2684 sec   (883 perm/sec)   p_kst 6.793249e-05   p_cons 6.464135e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.549948e-06	k: 0	n:2380000
Cons ci ratio: 9.969669e-02	ci left: 6.167900e-04	ci right 6.819139e-04	k: 1544	n:2380000
KS ci ratio: 3.079737e-01	ci left: 5.760158e-05	ci right 7.894052e-05	k: 161	n:2380000
PIK3CA   2380000 perm   2704 sec   (880 perm/sec)   p_kst 6.764706e-05   p_cons 6.487395e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.543463e-06	k: 0	n:2390000
Cons ci ratio: 9.953579e-02	ci left: 6.162492e-04	ci right 6.812049e-04	k: 1549	n:2390000
KS ci ratio: 3.070276e-01	ci left: 5.774670e-05	ci right 7.906082e-05	k: 162	n:2390000
PIK3CA   2390000 perm   2724 sec   (877 perm/sec)   p_kst 6.778243e-05   p_cons 6.481172e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.537032e-06	k: 0	n:2400000
Cons ci ratio: 9.937566e-02	ci left: 6.157130e-04	ci right 6.805017e-04	k: 1554	n:2400000
KS ci ratio: 3.051610e-01	ci left: 5.827543e-05	ci right 7.962853e-05	k: 164	n:2400000
PIK3CA   2400000 perm   2744 sec   (875 perm/sec)   p_kst 6.833333e-05   p_cons 6.475000e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.530654e-06	k: 0	n:2410000
Cons ci ratio: 9.912099e-02	ci left: 6.163953e-04	ci right 6.810799e-04	k: 1562	n:2410000
KS ci ratio: 3.051611e-01	ci left: 5.803362e-05	ci right 7.929813e-05	k: 164	n:2410000
PIK3CA   2410000 perm   2764 sec   (872 perm/sec)   p_kst 6.804979e-05   p_cons 6.481328e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.524329e-06	k: 0	n:2420000
Cons ci ratio: 9.893129e-02	ci left: 6.162662e-04	ci right 6.808062e-04	k: 1568	n:2420000
KS ci ratio: 3.042405e-01	ci left: 5.817545e-05	ci right 7.941517e-05	k: 165	n:2420000
PIK3CA   2420000 perm   2785 sec   (869 perm/sec)   p_kst 6.818182e-05   p_cons 6.479339e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.518056e-06	k: 0	n:2430000
Cons ci ratio: 9.883692e-02	ci left: 6.149341e-04	ci right 6.792697e-04	k: 1571	n:2430000
KS ci ratio: 3.042406e-01	ci left: 5.793605e-05	ci right 7.908836e-05	k: 165	n:2430000
PIK3CA   2430000 perm   2805 sec   (866 perm/sec)   p_kst 6.790123e-05   p_cons 6.465021e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.511835e-06	k: 0	n:2440000
Cons ci ratio: 9.868014e-02	ci left: 6.144125e-04	ci right 6.785855e-04	k: 1576	n:2440000
KS ci ratio: 3.042406e-01	ci left: 5.769860e-05	ci right 7.876423e-05	k: 165	n:2440000
PIK3CA   2440000 perm   2825 sec   (864 perm/sec)   p_kst 6.762295e-05   p_cons 6.459016e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.505664e-06	k: 0	n:2450000
Cons ci ratio: 9.849296e-02	ci left: 6.142932e-04	ci right 6.783252e-04	k: 1582	n:2450000
KS ci ratio: 3.033283e-01	ci left: 5.784015e-05	ci right 7.888192e-05	k: 166	n:2450000
PIK3CA   2450000 perm   2846 sec   (861 perm/sec)   p_kst 6.775510e-05   p_cons 6.457143e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.499543e-06	k: 0	n:2460000
Cons ci ratio: 9.830684e-02	ci left: 6.141751e-04	ci right 6.780668e-04	k: 1588	n:2460000
KS ci ratio: 3.024242e-01	ci left: 5.798065e-05	ci right 7.899856e-05	k: 167	n:2460000
PIK3CA   2460000 perm   2866 sec   (858 perm/sec)   p_kst 6.788618e-05   p_cons 6.455285e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.493472e-06	k: 0	n:2470000
Cons ci ratio: 9.806027e-02	ci left: 6.148479e-04	ci right 6.786399e-04	k: 1596	n:2470000
KS ci ratio: 3.024242e-01	ci left: 5.774591e-05	ci right 7.867873e-05	k: 167	n:2470000
PIK3CA   2470000 perm   2887 sec   (856 perm/sec)   p_kst 6.761134e-05   p_cons 6.461538e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.487450e-06	k: 0	n:2480000
Cons ci ratio: 9.778507e-02	ci left: 6.159089e-04	ci right 6.796213e-04	k: 1605	n:2480000
KS ci ratio: 3.006399e-01	ci left: 5.825851e-05	ci right 7.922875e-05	k: 169	n:2480000
PIK3CA   2480000 perm   2908 sec   (853 perm/sec)   p_kst 6.814516e-05   p_cons 6.471774e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.481477e-06	k: 0	n:2490000
Cons ci ratio: 9.748198e-02	ci left: 6.173534e-04	ci right 6.810060e-04	k: 1615	n:2490000
KS ci ratio: 3.006400e-01	ci left: 5.802454e-05	ci right 7.891056e-05	k: 169	n:2490000
PIK3CA   2490000 perm   2928 sec   (850 perm/sec)   p_kst 6.787149e-05   p_cons 6.485944e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.475551e-06	k: 0	n:2500000
Cons ci ratio: 9.736160e-02	ci left: 6.164450e-04	ci right 6.799210e-04	k: 1619	n:2500000
KS ci ratio: 3.006400e-01	ci left: 5.779244e-05	ci right 7.859492e-05	k: 169	n:2500000
PIK3CA   2500000 perm   2949 sec   (848 perm/sec)   p_kst 6.760000e-05   p_cons 6.476000e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.469672e-06	k: 0	n:2510000
Cons ci ratio: 9.718181e-02	ci left: 6.163213e-04	ci right 6.796607e-04	k: 1625	n:2510000
KS ci ratio: 3.006400e-01	ci left: 5.756219e-05	ci right 7.828180e-05	k: 169	n:2510000
PIK3CA   2510000 perm   2971 sec   (845 perm/sec)   p_kst 6.733068e-05   p_cons 6.474104e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.463840e-06	k: 0	n:2520000
Cons ci ratio: 9.697329e-02	ci left: 6.165859e-04	ci right 6.798088e-04	k: 1632	n:2520000
KS ci ratio: 2.988869e-01	ci left: 5.806775e-05	ci right 7.882431e-05	k: 171	n:2520000
PIK3CA   2520000 perm   2992 sec   (842 perm/sec)   p_kst 6.785714e-05   p_cons 6.476190e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.458054e-06	k: 0	n:2530000
Cons ci ratio: 9.679564e-02	ci left: 6.164629e-04	ci right 6.795508e-04	k: 1638	n:2530000
KS ci ratio: 2.971642e-01	ci left: 5.856965e-05	ci right 7.936219e-05	k: 173	n:2530000
PIK3CA   2530000 perm   3013 sec   (840 perm/sec)   p_kst 6.837945e-05   p_cons 6.474308e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.452314e-06	k: 0	n:2540000
Cons ci ratio: 9.658959e-02	ci left: 6.167251e-04	ci right 6.796979e-04	k: 1645	n:2540000
KS ci ratio: 2.954708e-01	ci left: 5.906794e-05	ci right 7.989550e-05	k: 175	n:2540000
PIK3CA   2540000 perm   3034 sec   (837 perm/sec)   p_kst 6.889764e-05   p_cons 6.476378e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.446618e-06	k: 0	n:2550000
Cons ci ratio: 9.638484e-02	ci left: 6.169855e-04	ci right 6.798438e-04	k: 1652	n:2550000
KS ci ratio: 2.954709e-01	ci left: 5.883630e-05	ci right 7.958218e-05	k: 175	n:2550000
PIK3CA   2550000 perm   3055 sec   (835 perm/sec)   p_kst 6.862745e-05   p_cons 6.478431e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.440968e-06	k: 0	n:2560000
Cons ci ratio: 9.623943e-02	ci left: 6.164815e-04	ci right 6.791883e-04	k: 1657	n:2560000
KS ci ratio: 2.954709e-01	ci left: 5.860647e-05	ci right 7.927132e-05	k: 175	n:2560000
PIK3CA   2560000 perm   3076 sec   (832 perm/sec)   p_kst 6.835938e-05   p_cons 6.472656e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.435361e-06	k: 0	n:2570000
Cons ci ratio: 9.606577e-02	ci left: 6.163612e-04	ci right 6.789363e-04	k: 1663	n:2570000
KS ci ratio: 2.938062e-01	ci left: 5.909913e-05	ci right 7.979843e-05	k: 177	n:2570000
PIK3CA   2570000 perm   3098 sec   (830 perm/sec)   p_kst 6.887160e-05   p_cons 6.470817e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.429797e-06	k: 0	n:2580000
Cons ci ratio: 9.580698e-02	ci left: 6.173769e-04	ci right 6.798768e-04	k: 1672	n:2580000
KS ci ratio: 2.929843e-01	ci left: 5.922914e-05	ci right 7.990517e-05	k: 178	n:2580000
PIK3CA   2580000 perm   3119 sec   (827 perm/sec)   p_kst 6.899225e-05   p_cons 6.480620e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.424277e-06	k: 0	n:2590000
Cons ci ratio: 9.557871e-02	ci left: 6.180081e-04	ci right 6.804145e-04	k: 1680	n:2590000
KS ci ratio: 2.905595e-01	ci left: 6.007400e-05	ci right 8.083948e-05	k: 181	n:2590000
PIK3CA   2590000 perm   3141 sec   (825 perm/sec)   p_kst 6.988417e-05   p_cons 6.486486e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.418799e-06	k: 0	n:2600000
Cons ci ratio: 9.532382e-02	ci left: 6.190100e-04	ci right 6.813416e-04	k: 1689	n:2600000
KS ci ratio: 2.881938e-01	ci left: 6.091306e-05	ci right 8.176591e-05	k: 184	n:2600000
PIK3CA   2600000 perm   3163 sec   (822 perm/sec)   p_kst 7.076923e-05   p_cons 6.496154e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.413363e-06	k: 0	n:2610000
Cons ci ratio: 9.523939e-02	ci left: 6.177604e-04	ci right 6.799079e-04	k: 1692	n:2610000
KS ci ratio: 2.881939e-01	ci left: 6.067967e-05	ci right 8.145264e-05	k: 184	n:2610000
PIK3CA   2610000 perm   3185 sec   (820 perm/sec)   p_kst 7.049808e-05   p_cons 6.482759e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.407968e-06	k: 0	n:2620000
Cons ci ratio: 9.504310e-02	ci left: 6.180107e-04	ci right 6.800482e-04	k: 1699	n:2620000
KS ci ratio: 2.881939e-01	ci left: 6.044807e-05	ci right 8.114175e-05	k: 184	n:2620000
PIK3CA   2620000 perm   3207 sec   (817 perm/sec)   p_kst 7.022901e-05   p_cons 6.484733e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.402615e-06	k: 0	n:2630000
Cons ci ratio: 9.484801e-02	ci left: 6.182593e-04	ci right 6.801872e-04	k: 1706	n:2630000
KS ci ratio: 2.881939e-01	ci left: 6.021823e-05	ci right 8.083323e-05	k: 184	n:2630000
PIK3CA   2630000 perm   3228 sec   (815 perm/sec)   p_kst 6.996198e-05   p_cons 6.486692e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.397302e-06	k: 0	n:2640000
Cons ci ratio: 9.468177e-02	ci left: 6.181362e-04	ci right 6.799373e-04	k: 1712	n:2640000
KS ci ratio: 2.866486e-01	ci left: 6.069310e-05	ci right 8.133908e-05	k: 186	n:2640000
PIK3CA   2640000 perm   3250 sec   (812 perm/sec)   p_kst 7.045455e-05   p_cons 6.484848e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.392029e-06	k: 0	n:2650000
Cons ci ratio: 9.462662e-02	ci left: 6.165405e-04	ci right 6.781441e-04	k: 1714	n:2650000
KS ci ratio: 2.866486e-01	ci left: 6.046407e-05	ci right 8.103214e-05	k: 186	n:2650000
PIK3CA   2650000 perm   3272 sec   (810 perm/sec)   p_kst 7.018868e-05   p_cons 6.467925e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.386796e-06	k: 0	n:2660000
Cons ci ratio: 9.432453e-02	ci left: 6.182603e-04	ci right 6.798277e-04	k: 1725	n:2660000
KS ci ratio: 2.866487e-01	ci left: 6.023676e-05	ci right 8.072751e-05	k: 186	n:2660000
PIK3CA   2660000 perm   3295 sec   (807 perm/sec)   p_kst 6.992481e-05   p_cons 6.484962e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.381602e-06	k: 0	n:2670000
Cons ci ratio: 9.410666e-02	ci left: 6.188704e-04	ci right 6.803483e-04	k: 1733	n:2670000
KS ci ratio: 2.866487e-01	ci left: 6.001115e-05	ci right 8.042516e-05	k: 186	n:2670000
PIK3CA   2670000 perm   3317 sec   (805 perm/sec)   p_kst 6.966292e-05   p_cons 6.490637e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.376447e-06	k: 0	n:2680000
Cons ci ratio: 9.386334e-02	ci left: 6.198405e-04	ci right 6.812468e-04	k: 1742	n:2680000
KS ci ratio: 2.866487e-01	ci left: 5.978723e-05	ci right 8.012507e-05	k: 186	n:2680000
PIK3CA   2680000 perm   3339 sec   (803 perm/sec)   p_kst 6.940299e-05   p_cons 6.500000e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.371330e-06	k: 0	n:2690000
Cons ci ratio: 9.367542e-02	ci left: 6.200774e-04	ci right 6.813775e-04	k: 1749	n:2690000
KS ci ratio: 2.866488e-01	ci left: 5.956497e-05	ci right 7.982721e-05	k: 186	n:2690000
PIK3CA   2690000 perm   3361 sec   (800 perm/sec)   p_kst 6.914498e-05   p_cons 6.501859e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.366251e-06	k: 0	n:2700000
Cons ci ratio: 9.351525e-02	ci left: 6.199511e-04	ci right 6.811281e-04	k: 1755	n:2700000
KS ci ratio: 2.866488e-01	ci left: 5.934436e-05	ci right 7.953155e-05	k: 186	n:2700000
PIK3CA   2700000 perm   3384 sec   (798 perm/sec)   p_kst 6.888889e-05   p_cons 6.500000e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.361209e-06	k: 0	n:2710000
Cons ci ratio: 9.332941e-02	ci left: 6.201861e-04	ci right 6.812581e-04	k: 1762	n:2710000
KS ci ratio: 2.858854e-01	ci left: 5.946789e-05	ci right 7.963350e-05	k: 187	n:2710000
PIK3CA   2710000 perm   3406 sec   (796 perm/sec)   p_kst 6.900369e-05   p_cons 6.501845e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.356205e-06	k: 0	n:2720000
Cons ci ratio: 9.317101e-02	ci left: 6.200604e-04	ci right 6.810108e-04	k: 1768	n:2720000
KS ci ratio: 2.851281e-01	ci left: 5.959058e-05	ci right 7.973463e-05	k: 188	n:2720000
PIK3CA   2720000 perm   3428 sec   (793 perm/sec)   p_kst 6.911765e-05   p_cons 6.500000e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.351237e-06	k: 0	n:2730000
Cons ci ratio: 9.296102e-02	ci left: 6.206514e-04	ci right 6.815148e-04	k: 1776	n:2730000
KS ci ratio: 2.843767e-01	ci left: 5.971245e-05	ci right 7.983495e-05	k: 189	n:2730000
PIK3CA   2730000 perm   3451 sec   (791 perm/sec)   p_kst 6.923077e-05   p_cons 6.505495e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.346305e-06	k: 0	n:2740000
Cons ci ratio: 9.280449e-02	ci left: 6.205251e-04	ci right 6.812682e-04	k: 1782	n:2740000
KS ci ratio: 2.828917e-01	ci left: 6.017253e-05	ci right 8.032529e-05	k: 191	n:2740000
PIK3CA   2740000 perm   3473 sec   (789 perm/sec)   p_kst 6.970803e-05   p_cons 6.503650e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.341410e-06	k: 0	n:2750000
Cons ci ratio: 9.270060e-02	ci left: 6.196895e-04	ci right 6.802791e-04	k: 1786	n:2750000
KS ci ratio: 2.828917e-01	ci left: 5.995372e-05	ci right 8.003320e-05	k: 191	n:2750000
PIK3CA   2750000 perm   3496 sec   (787 perm/sec)   p_kst 6.945455e-05   p_cons 6.494545e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.336550e-06	k: 0	n:2760000
Cons ci ratio: 9.241653e-02	ci left: 6.213375e-04	ci right 6.818921e-04	k: 1797	n:2760000
KS ci ratio: 2.654854e-01	ci left: 6.850991e-05	ci right 8.980882e-05	k: 217	n:2760000
PIK3CA   2760000 perm   3518 sec   (784 perm/sec)   p_kst 7.862319e-05   p_cons 6.510870e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.331725e-06	k: 0	n:2770000
Cons ci ratio: 9.236524e-02	ci left: 6.197997e-04	ci right 6.801691e-04	k: 1799	n:2770000
KS ci ratio: 2.648785e-01	ci left: 6.859960e-05	ci right 8.986955e-05	k: 218	n:2770000
PIK3CA   2770000 perm   3541 sec   (782 perm/sec)   p_kst 7.870036e-05   p_cons 6.494585e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.326934e-06	k: 0	n:2780000
Cons ci ratio: 9.223725e-02	ci left: 6.193273e-04	ci right 6.795625e-04	k: 1804	n:2780000
KS ci ratio: 2.648786e-01	ci left: 6.835283e-05	ci right 8.954628e-05	k: 218	n:2780000
PIK3CA   2780000 perm   3564 sec   (780 perm/sec)   p_kst 7.841727e-05   p_cons 6.489209e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.322178e-06	k: 0	n:2790000
Cons ci ratio: 9.205891e-02	ci left: 6.195586e-04	ci right 6.796936e-04	k: 1811	n:2790000
KS ci ratio: 2.648786e-01	ci left: 6.810784e-05	ci right 8.922533e-05	k: 218	n:2790000
PIK3CA   2790000 perm   3587 sec   (778 perm/sec)   p_kst 7.813620e-05   p_cons 6.491039e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.317456e-06	k: 0	n:2800000
Cons ci ratio: 9.193218e-02	ci left: 6.190905e-04	ci right 6.790929e-04	k: 1816	n:2800000
KS ci ratio: 2.648786e-01	ci left: 6.786460e-05	ci right 8.890667e-05	k: 218	n:2800000
PIK3CA   2800000 perm   3610 sec   (776 perm/sec)   p_kst 7.785714e-05   p_cons 6.485714e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.312768e-06	k: 0	n:2810000
Cons ci ratio: 9.173044e-02	ci left: 6.196689e-04	ci right 6.795885e-04	k: 1824	n:2810000
KS ci ratio: 2.642760e-01	ci left: 6.795536e-05	ci right 8.896970e-05	k: 219	n:2810000
PIK3CA   2810000 perm   3634 sec   (773 perm/sec)   p_kst 7.793594e-05   p_cons 6.491103e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.308112e-06	k: 0	n:2820000
Cons ci ratio: 9.160506e-02	ci left: 6.192039e-04	ci right 6.789923e-04	k: 1829	n:2820000
KS ci ratio: 2.642760e-01	ci left: 6.771438e-05	ci right 8.865420e-05	k: 219	n:2820000
PIK3CA   2820000 perm   3657 sec   (771 perm/sec)   p_kst 7.765957e-05   p_cons 6.485816e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.303490e-06	k: 0	n:2830000
Cons ci ratio: 9.143036e-02	ci left: 6.194328e-04	ci right 6.791231e-04	k: 1836	n:2830000
KS ci ratio: 2.636774e-01	ci left: 6.780508e-05	ci right 8.871762e-05	k: 220	n:2830000
PIK3CA   2830000 perm   3680 sec   (769 perm/sec)   p_kst 7.773852e-05   p_cons 6.487633e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.298900e-06	k: 0	n:2840000
Cons ci ratio: 9.118245e-02	ci left: 6.206925e-04	ci right 6.803333e-04	k: 1846	n:2840000
KS ci ratio: 2.636774e-01	ci left: 6.756633e-05	ci right 8.840524e-05	k: 220	n:2840000
PIK3CA   2840000 perm   3703 sec   (767 perm/sec)   p_kst 7.746479e-05   p_cons 6.500000e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.294343e-06	k: 0	n:2850000
Cons ci ratio: 9.108392e-02	ci left: 6.198861e-04	ci right 6.793817e-04	k: 1850	n:2850000
KS ci ratio: 2.630829e-01	ci left: 6.765697e-05	ci right 8.846903e-05	k: 221	n:2850000
PIK3CA   2850000 perm   3726 sec   (765 perm/sec)   p_kst 7.754386e-05   p_cons 6.491228e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.289817e-06	k: 0	n:2860000
Cons ci ratio: 9.098570e-02	ci left: 6.190854e-04	ci right 6.784367e-04	k: 1854	n:2860000
KS ci ratio: 2.624923e-01	ci left: 6.774703e-05	ci right 8.853233e-05	k: 222	n:2860000
PIK3CA   2860000 perm   3749 sec   (763 perm/sec)   p_kst 7.762238e-05   p_cons 6.482517e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.285323e-06	k: 0	n:2870000
Cons ci ratio: 9.076574e-02	ci left: 6.199930e-04	ci right 6.792799e-04	k: 1863	n:2870000
KS ci ratio: 2.619058e-01	ci left: 6.783651e-05	ci right 8.859514e-05	k: 223	n:2870000
PIK3CA   2870000 perm   3773 sec   (761 perm/sec)   p_kst 7.770035e-05   p_cons 6.491289e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.280860e-06	k: 0	n:2880000
Cons ci ratio: 9.062002e-02	ci left: 6.198763e-04	ci right 6.790519e-04	k: 1869	n:2880000
KS ci ratio: 2.613231e-01	ci left: 6.792542e-05	ci right 8.865745e-05	k: 224	n:2880000
PIK3CA   2880000 perm   3796 sec   (759 perm/sec)   p_kst 7.777778e-05   p_cons 6.489583e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.276428e-06	k: 0	n:2890000
Cons ci ratio: 9.052329e-02	ci left: 6.190841e-04	ci right 6.781176e-04	k: 1873	n:2890000
KS ci ratio: 2.613231e-01	ci left: 6.769038e-05	ci right 8.835068e-05	k: 224	n:2890000
PIK3CA   2890000 perm   3819 sec   (757 perm/sec)   p_kst 7.750865e-05   p_cons 6.480969e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.272027e-06	k: 0	n:2900000
Cons ci ratio: 9.042688e-02	ci left: 6.182974e-04	ci right 6.771898e-04	k: 1877	n:2900000
KS ci ratio: 2.607443e-01	ci left: 6.777923e-05	ci right 8.841336e-05	k: 225	n:2900000
PIK3CA   2900000 perm   3843 sec   (755 perm/sec)   p_kst 7.758621e-05   p_cons 6.472414e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.267655e-06	k: 0	n:2910000
Cons ci ratio: 9.023486e-02	ci left: 6.188597e-04	ci right 6.776739e-04	k: 1885	n:2910000
KS ci ratio: 2.607444e-01	ci left: 6.754631e-05	ci right 8.810954e-05	k: 225	n:2910000
PIK3CA   2910000 perm   3866 sec   (753 perm/sec)   p_kst 7.731959e-05   p_cons 6.477663e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.263314e-06	k: 0	n:2920000
Cons ci ratio: 9.004407e-02	ci left: 6.194183e-04	ci right 6.781546e-04	k: 1893	n:2920000
KS ci ratio: 2.607444e-01	ci left: 6.731499e-05	ci right 8.780780e-05	k: 225	n:2920000
PIK3CA   2920000 perm   3890 sec   (751 perm/sec)   p_kst 7.705479e-05   p_cons 6.482877e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.259002e-06	k: 0	n:2930000
Cons ci ratio: 8.990179e-02	ci left: 6.193060e-04	ci right 6.779339e-04	k: 1899	n:2930000
KS ci ratio: 2.601694e-01	ci left: 6.740426e-05	ci right 8.787164e-05	k: 226	n:2930000
PIK3CA   2930000 perm   3914 sec   (749 perm/sec)   p_kst 7.713311e-05   p_cons 6.481229e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.254720e-06	k: 0	n:2940000
Cons ci ratio: 8.973663e-02	ci left: 6.195270e-04	ci right 6.780624e-04	k: 1906	n:2940000
KS ci ratio: 2.601694e-01	ci left: 6.717499e-05	ci right 8.757276e-05	k: 226	n:2940000
PIK3CA   2940000 perm   3939 sec   (746 perm/sec)   p_kst 7.687075e-05   p_cons 6.482993e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.250467e-06	k: 0	n:2950000
Cons ci ratio: 8.952558e-02	ci left: 6.204094e-04	ci right 6.788831e-04	k: 1915	n:2950000
KS ci ratio: 2.601695e-01	ci left: 6.694728e-05	ci right 8.727590e-05	k: 226	n:2950000
PIK3CA   2950000 perm   3964 sec   (744 perm/sec)   p_kst 7.661017e-05   p_cons 6.491525e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.246242e-06	k: 0	n:2960000
Cons ci ratio: 8.938574e-02	ci left: 6.202951e-04	ci right 6.786620e-04	k: 1921	n:2960000
KS ci ratio: 2.601695e-01	ci left: 6.672111e-05	ci right 8.698105e-05	k: 226	n:2960000
PIK3CA   2960000 perm   3988 sec   (742 perm/sec)   p_kst 7.635135e-05   p_cons 6.489865e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.242046e-06	k: 0	n:2970000
Cons ci ratio: 8.931612e-02	ci left: 6.191940e-04	ci right 6.774096e-04	k: 1924	n:2970000
KS ci ratio: 2.595983e-01	ci left: 6.681123e-05	ci right 8.704677e-05	k: 227	n:2970000
PIK3CA   2970000 perm   4012 sec   (740 perm/sec)   p_kst 7.643098e-05   p_cons 6.478114e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.237878e-06	k: 0	n:2980000
Cons ci ratio: 8.917726e-02	ci left: 6.190847e-04	ci right 6.771948e-04	k: 1930	n:2980000
KS ci ratio: 2.595984e-01	ci left: 6.658703e-05	ci right 8.675467e-05	k: 227	n:2980000
PIK3CA   2980000 perm   4036 sec   (738 perm/sec)   p_kst 7.617450e-05   p_cons 6.476510e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.233738e-06	k: 0	n:2990000
Cons ci ratio: 8.903904e-02	ci left: 6.189762e-04	ci right 6.769813e-04	k: 1936	n:2990000
KS ci ratio: 2.595984e-01	ci left: 6.636433e-05	ci right 8.646452e-05	k: 227	n:2990000
PIK3CA   2990000 perm   4061 sec   (736 perm/sec)   p_kst 7.591973e-05   p_cons 6.474916e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.229626e-06	k: 0	n:3000000
Cons ci ratio: 8.885571e-02	ci left: 6.195203e-04	ci right 6.774506e-04	k: 1944	n:3000000
KS ci ratio: 2.590310e-01	ci left: 6.645478e-05	ci right 8.653126e-05	k: 228	n:3000000
PIK3CA   3000000 perm   4085 sec   (734 perm/sec)   p_kst 7.600000e-05   p_cons 6.480000e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.225541e-06	k: 0	n:3010000
Cons ci ratio: 8.865081e-02	ci left: 6.203857e-04	ci right 6.782563e-04	k: 1953	n:3010000
KS ci ratio: 2.584672e-01	ci left: 6.654468e-05	ci right 8.659750e-05	k: 229	n:3010000
PIK3CA   3010000 perm   4109 sec   (733 perm/sec)   p_kst 7.607973e-05   p_cons 6.488372e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.221483e-06	k: 0	n:3020000
Cons ci ratio: 8.846987e-02	ci left: 6.209218e-04	ci right 6.787181e-04	k: 1961	n:3020000
KS ci ratio: 2.579072e-01	ci left: 6.663403e-05	ci right 8.666326e-05	k: 230	n:3020000
PIK3CA   3020000 perm   4133 sec   (731 perm/sec)   p_kst 7.615894e-05   p_cons 6.493377e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.217451e-06	k: 0	n:3030000
Cons ci ratio: 8.826761e-02	ci left: 6.217772e-04	ci right 6.795140e-04	k: 1970	n:3030000
KS ci ratio: 2.579072e-01	ci left: 6.641412e-05	ci right 8.637725e-05	k: 230	n:3030000
PIK3CA   3030000 perm   4158 sec   (729 perm/sec)   p_kst 7.590759e-05   p_cons 6.501650e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.213446e-06	k: 0	n:3040000
Cons ci ratio: 8.811128e-02	ci left: 6.219838e-04	ci right 6.796322e-04	k: 1977	n:3040000
KS ci ratio: 2.579072e-01	ci left: 6.619565e-05	ci right 8.609311e-05	k: 230	n:3040000
PIK3CA   3040000 perm   4183 sec   (727 perm/sec)   p_kst 7.565789e-05   p_cons 6.503289e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.209468e-06	k: 0	n:3050000
Cons ci ratio: 8.795578e-02	ci left: 6.221890e-04	ci right 6.797495e-04	k: 1984	n:3050000
KS ci ratio: 2.579073e-01	ci left: 6.597862e-05	ci right 8.581084e-05	k: 230	n:3050000
PIK3CA   3050000 perm   4208 sec   (725 perm/sec)   p_kst 7.540984e-05   p_cons 6.504918e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.205515e-06	k: 0	n:3060000
Cons ci ratio: 8.784523e-02	ci left: 6.217538e-04	ci right 6.791980e-04	k: 1989	n:3060000
KS ci ratio: 2.579073e-01	ci left: 6.576300e-05	ci right 8.553042e-05	k: 230	n:3060000
PIK3CA   3060000 perm   4233 sec   (723 perm/sec)   p_kst 7.516340e-05   p_cons 6.500000e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.201589e-06	k: 0	n:3070000
Cons ci ratio: 8.780119e-02	ci left: 6.203657e-04	ci right 6.776514e-04	k: 1991	n:3070000
KS ci ratio: 2.567980e-01	ci left: 6.615823e-05	ci right 8.594521e-05	k: 232	n:3070000
PIK3CA   3070000 perm   4258 sec   (721 perm/sec)   p_kst 7.557003e-05   p_cons 6.485342e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.197687e-06	k: 0	n:3080000
Cons ci ratio: 8.758158e-02	ci left: 6.215271e-04	ci right 6.787691e-04	k: 2001	n:3080000
KS ci ratio: 2.562486e-01	ci left: 6.624724e-05	ci right 8.601167e-05	k: 233	n:3080000
PIK3CA   3080000 perm   4284 sec   (719 perm/sec)   p_kst 7.564935e-05   p_cons 6.496753e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.193811e-06	k: 0	n:3090000
Cons ci ratio: 8.742886e-02	ci left: 6.217315e-04	ci right 6.788874e-04	k: 2008	n:3090000
KS ci ratio: 2.562487e-01	ci left: 6.603284e-05	ci right 8.573332e-05	k: 233	n:3090000
PIK3CA   3090000 perm   4311 sec   (717 perm/sec)   p_kst 7.540453e-05   p_cons 6.498382e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.189960e-06	k: 0	n:3100000
Cons ci ratio: 8.734199e-02	ci left: 6.209880e-04	ci right 6.780160e-04	k: 2012	n:3100000
KS ci ratio: 2.557029e-01	ci left: 6.612172e-05	ci right 8.579999e-05	k: 234	n:3100000
PIK3CA   3100000 perm   4336 sec   (715 perm/sec)   p_kst 7.548387e-05   p_cons 6.490323e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.186134e-06	k: 0	n:3110000
Cons ci ratio: 8.727702e-02	ci left: 6.199348e-04	ci right 6.768215e-04	k: 2015	n:3110000
KS ci ratio: 2.551605e-01	ci left: 6.621007e-05	ci right 8.586619e-05	k: 235	n:3110000
PIK3CA   3110000 perm   4361 sec   (713 perm/sec)   p_kst 7.556270e-05   p_cons 6.479100e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.182332e-06	k: 0	n:3120000
Cons ci ratio: 8.712589e-02	ci left: 6.201425e-04	ci right 6.769447e-04	k: 2022	n:3120000
KS ci ratio: 2.546217e-01	ci left: 6.629790e-05	ci right 8.593192e-05	k: 236	n:3120000
PIK3CA   3120000 perm   4387 sec   (711 perm/sec)   p_kst 7.564103e-05   p_cons 6.480769e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.178555e-06	k: 0	n:3130000
Cons ci ratio: 8.691129e-02	ci left: 6.212866e-04	ci right 6.780464e-04	k: 2032	n:3130000
KS ci ratio: 2.546217e-01	ci left: 6.608608e-05	ci right 8.565738e-05	k: 236	n:3130000
PIK3CA   3130000 perm   4412 sec   (709 perm/sec)   p_kst 7.539936e-05   p_cons 6.492013e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.174802e-06	k: 0	n:3140000
Cons ci ratio: 8.671952e-02	ci left: 6.221120e-04	ci right 6.788154e-04	k: 2041	n:3140000
KS ci ratio: 2.540862e-01	ci left: 6.617379e-05	ci right 8.572331e-05	k: 237	n:3140000
PIK3CA   3140000 perm   4438 sec   (708 perm/sec)   p_kst 7.547771e-05   p_cons 6.500000e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.171072e-06	k: 0	n:3150000
Cons ci ratio: 8.655013e-02	ci left: 6.226217e-04	ci right 6.792551e-04	k: 2049	n:3150000
KS ci ratio: 2.535541e-01	ci left: 6.626098e-05	ci right 8.578879e-05	k: 238	n:3150000
PIK3CA   3150000 perm   4464 sec   (706 perm/sec)   p_kst 7.555556e-05   p_cons 6.504762e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.167366e-06	k: 0	n:3160000
Cons ci ratio: 8.638172e-02	ci left: 6.231283e-04	ci right 6.796920e-04	k: 2057	n:3160000
KS ci ratio: 2.524997e-01	ci left: 6.664407e-05	ci right 8.619026e-05	k: 240	n:3160000
PIK3CA   3160000 perm   4490 sec   (704 perm/sec)   p_kst 7.594937e-05   p_cons 6.509494e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.163684e-06	k: 0	n:3170000
Cons ci ratio: 8.623518e-02	ci left: 6.233232e-04	ci right 6.798037e-04	k: 2064	n:3170000
KS ci ratio: 2.519775e-01	ci left: 6.672936e-05	ci right 8.625373e-05	k: 241	n:3170000
PIK3CA   3170000 perm   4516 sec   (702 perm/sec)   p_kst 7.602524e-05   p_cons 6.511041e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.160024e-06	k: 0	n:3180000
Cons ci ratio: 8.613099e-02	ci left: 6.229015e-04	ci right 6.792721e-04	k: 2069	n:3180000
KS ci ratio: 2.519775e-01	ci left: 6.651952e-05	ci right 8.598249e-05	k: 241	n:3180000
PIK3CA   3180000 perm   4542 sec   (700 perm/sec)   p_kst 7.578616e-05   p_cons 6.506289e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.156388e-06	k: 0	n:3190000
Cons ci ratio: 8.600644e-02	ci left: 6.227892e-04	ci right 6.790641e-04	k: 2075	n:3190000
KS ci ratio: 2.514585e-01	ci left: 6.660470e-05	ci right 8.604617e-05	k: 242	n:3190000
PIK3CA   3190000 perm   4569 sec   (698 perm/sec)   p_kst 7.586207e-05   p_cons 6.504702e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.152774e-06	k: 0	n:3200000
Cons ci ratio: 8.575886e-02	ci left: 6.245125e-04	ci right 6.807725e-04	k: 2087	n:3200000
KS ci ratio: 2.514585e-01	ci left: 6.639656e-05	ci right 8.577727e-05	k: 242	n:3200000
PIK3CA   3200000 perm   4595 sec   (696 perm/sec)   p_kst 7.562500e-05   p_cons 6.521875e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.149183e-06	k: 0	n:3210000
Cons ci ratio: 8.557460e-02	ci left: 6.253106e-04	ci right 6.815155e-04	k: 2096	n:3210000
KS ci ratio: 2.509427e-01	ci left: 6.648163e-05	ci right 8.584115e-05	k: 243	n:3210000
PIK3CA   3210000 perm   4622 sec   (694 perm/sec)   p_kst 7.570093e-05   p_cons 6.529595e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.145614e-06	k: 0	n:3220000
Cons ci ratio: 8.547278e-02	ci left: 6.248882e-04	ci right 6.809850e-04	k: 2101	n:3220000
KS ci ratio: 2.494140e-01	ci left: 6.714844e-05	ci right 8.656453e-05	k: 246	n:3220000
PIK3CA   3220000 perm   4651 sec   (692 perm/sec)   p_kst 7.639752e-05   p_cons 6.524845e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.142067e-06	k: 0	n:3230000
Cons ci ratio: 8.533081e-02	ci left: 6.250745e-04	ci right 6.810901e-04	k: 2108	n:3230000
KS ci ratio: 2.494141e-01	ci left: 6.694054e-05	ci right 8.629653e-05	k: 246	n:3230000
PIK3CA   3230000 perm   4679 sec   (690 perm/sec)   p_kst 7.616099e-05   p_cons 6.526316e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.138542e-06	k: 0	n:3240000
Cons ci ratio: 8.522986e-02	ci left: 6.246556e-04	ci right 6.805641e-04	k: 2113	n:3240000
KS ci ratio: 2.489107e-01	ci left: 6.702331e-05	ci right 8.635805e-05	k: 247	n:3240000
PIK3CA   3240000 perm   4705 sec   (689 perm/sec)   p_kst 7.623457e-05   p_cons 6.521605e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.135039e-06	k: 0	n:3250000
Cons ci ratio: 8.516950e-02	ci left: 6.236369e-04	ci right 6.794128e-04	k: 2116	n:3250000
KS ci ratio: 2.479130e-01	ci left: 6.739416e-05	ci right 8.674595e-05	k: 249	n:3250000
PIK3CA   3250000 perm   4733 sec   (687 perm/sec)   p_kst 7.661538e-05   p_cons 6.510769e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.131557e-06	k: 0	n:3260000
Cons ci ratio: 8.500901e-02	ci left: 6.241257e-04	ci right 6.798349e-04	k: 2124	n:3260000
KS ci ratio: 2.474186e-01	ci left: 6.747515e-05	ci right 8.680561e-05	k: 250	n:3260000
PIK3CA   3260000 perm   4760 sec   (685 perm/sec)   p_kst 7.668712e-05   p_cons 6.515337e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.128097e-06	k: 0	n:3270000
Cons ci ratio: 8.494911e-02	ci left: 6.231150e-04	ci right 6.786929e-04	k: 2127	n:3270000
KS ci ratio: 2.469272e-01	ci left: 6.755567e-05	ci right 8.686486e-05	k: 251	n:3270000
PIK3CA   3270000 perm   4787 sec   (683 perm/sec)   p_kst 7.675841e-05   p_cons 6.504587e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.124658e-06	k: 0	n:3280000
Cons ci ratio: 8.480973e-02	ci left: 6.233041e-04	ci right 6.788031e-04	k: 2134	n:3280000
KS ci ratio: 2.464387e-01	ci left: 6.763574e-05	ci right 8.692371e-05	k: 252	n:3280000
PIK3CA   3280000 perm   4815 sec   (681 perm/sec)   p_kst 7.682927e-05   p_cons 6.506098e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.121239e-06	k: 0	n:3290000
Cons ci ratio: 8.471061e-02	ci left: 6.228971e-04	ci right 6.782919e-04	k: 2139	n:3290000
KS ci ratio: 2.459531e-01	ci left: 6.771536e-05	ci right 8.698217e-05	k: 253	n:3290000
PIK3CA   3290000 perm   4842 sec   (679 perm/sec)   p_kst 7.689970e-05   p_cons 6.501520e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.117842e-06	k: 0	n:3300000
Cons ci ratio: 8.465134e-02	ci left: 6.218994e-04	ci right 6.771648e-04	k: 2142	n:3300000
KS ci ratio: 2.454704e-01	ci left: 6.779454e-05	ci right 8.704024e-05	k: 254	n:3300000
PIK3CA   3300000 perm   4869 sec   (678 perm/sec)   p_kst 7.696970e-05   p_cons 6.490909e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.114464e-06	k: 0	n:3310000
Cons ci ratio: 8.459220e-02	ci left: 6.209077e-04	ci right 6.760445e-04	k: 2145	n:3310000
KS ci ratio: 2.454704e-01	ci left: 6.758972e-05	ci right 8.677728e-05	k: 254	n:3310000
PIK3CA   3310000 perm   4897 sec   (676 perm/sec)   p_kst 7.673716e-05   p_cons 6.480363e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.111108e-06	k: 0	n:3320000
Cons ci ratio: 8.445456e-02	ci left: 6.211013e-04	ci right 6.761612e-04	k: 2152	n:3320000
KS ci ratio: 2.454705e-01	ci left: 6.738613e-05	ci right 8.651590e-05	k: 254	n:3320000
PIK3CA   3320000 perm   4926 sec   (674 perm/sec)   p_kst 7.650602e-05   p_cons 6.481928e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.107771e-06	k: 0	n:3330000
Cons ci ratio: 8.429807e-02	ci left: 6.215879e-04	ci right 6.765838e-04	k: 2160	n:3330000
KS ci ratio: 2.445134e-01	ci left: 6.774751e-05	ci right 8.689349e-05	k: 256	n:3330000
PIK3CA   3330000 perm   4954 sec   (672 perm/sec)   p_kst 7.687688e-05   p_cons 6.486486e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.104454e-06	k: 0	n:3340000
Cons ci ratio: 8.427865e-02	ci left: 6.200199e-04	ci right 6.748638e-04	k: 2161	n:3340000
KS ci ratio: 2.435675e-01	ci left: 6.810686e-05	ci right 8.726868e-05	k: 258	n:3340000
PIK3CA   3340000 perm   4984 sec   (670 perm/sec)   p_kst 7.724551e-05   p_cons 6.470060e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.101157e-06	k: 0	n:3350000
Cons ci ratio: 8.410374e-02	ci left: 6.207991e-04	ci right 6.755924e-04	k: 2170	n:3350000
KS ci ratio: 2.430986e-01	ci left: 6.818386e-05	ci right 8.732485e-05	k: 259	n:3350000
PIK3CA   3350000 perm   5013 sec   (668 perm/sec)   p_kst 7.731343e-05   p_cons 6.477612e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.097880e-06	k: 0	n:3360000
Cons ci ratio: 8.394919e-02	ci left: 6.212824e-04	ci right 6.760126e-04	k: 2178	n:3360000
KS ci ratio: 2.417081e-01	ci left: 6.881957e-05	ci right 8.801193e-05	k: 262	n:3360000
PIK3CA   3360000 perm   5042 sec   (666 perm/sec)   p_kst 7.797619e-05   p_cons 6.482143e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.094622e-06	k: 0	n:3370000
Cons ci ratio: 8.385306e-02	ci left: 6.208914e-04	ci right 6.755215e-04	k: 2183	n:3370000
KS ci ratio: 2.407942e-01	ci left: 6.917296e-05	ci right 8.838004e-05	k: 264	n:3370000
PIK3CA   3370000 perm   5070 sec   (665 perm/sec)   p_kst 7.833828e-05   p_cons 6.477745e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.091384e-06	k: 0	n:3380000
Cons ci ratio: 8.375726e-02	ci left: 6.205027e-04	ci right 6.750332e-04	k: 2188	n:3380000
KS ci ratio: 2.407942e-01	ci left: 6.896830e-05	ci right 8.811857e-05	k: 264	n:3380000
PIK3CA   3380000 perm   5098 sec   (663 perm/sec)   p_kst 7.810651e-05   p_cons 6.473373e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.088164e-06	k: 0	n:3390000
Cons ci ratio: 8.364271e-02	ci left: 6.204052e-04	ci right 6.748489e-04	k: 2194	n:3390000
KS ci ratio: 2.407942e-01	ci left: 6.876485e-05	ci right 8.785863e-05	k: 264	n:3390000
PIK3CA   3390000 perm   5126 sec   (661 perm/sec)   p_kst 7.787611e-05   p_cons 6.471976e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.084964e-06	k: 0	n:3400000
Cons ci ratio: 8.347173e-02	ci left: 6.211722e-04	ci right 6.755664e-04	k: 2203	n:3400000
KS ci ratio: 2.407943e-01	ci left: 6.856260e-05	ci right 8.760022e-05	k: 264	n:3400000
PIK3CA   3400000 perm   5154 sec   (660 perm/sec)   p_kst 7.764706e-05   p_cons 6.479412e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.081782e-06	k: 0	n:3410000
Cons ci ratio: 8.341502e-02	ci left: 6.202120e-04	ci right 6.744834e-04	k: 2206	n:3410000
KS ci ratio: 2.407943e-01	ci left: 6.836154e-05	ci right 8.734333e-05	k: 264	n:3410000
PIK3CA   3410000 perm   5186 sec   (658 perm/sec)   p_kst 7.741935e-05   p_cons 6.469208e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.078619e-06	k: 0	n:3420000
Cons ci ratio: 8.333956e-02	ci left: 6.195437e-04	ci right 6.737052e-04	k: 2210	n:3420000
KS ci ratio: 2.403412e-01	ci left: 6.843643e-05	ci right 8.739793e-05	k: 265	n:3420000
PIK3CA   3420000 perm   5216 sec   (656 perm/sec)   p_kst 7.748538e-05   p_cons 6.461988e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.075474e-06	k: 0	n:3430000
Cons ci ratio: 8.326431e-02	ci left: 6.188794e-04	ci right 6.729315e-04	k: 2214	n:3430000
KS ci ratio: 2.398907e-01	ci left: 6.851091e-05	ci right 8.745218e-05	k: 266	n:3430000
PIK3CA   3430000 perm   5244 sec   (654 perm/sec)   p_kst 7.755102e-05   p_cons 6.454810e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.072348e-06	k: 0	n:3440000
Cons ci ratio: 8.315177e-02	ci left: 6.187882e-04	ci right 6.727558e-04	k: 2220	n:3440000
KS ci ratio: 2.398908e-01	ci left: 6.831175e-05	ci right 8.719796e-05	k: 266	n:3440000
PIK3CA   3440000 perm   5274 sec   (652 perm/sec)   p_kst 7.732558e-05   p_cons 6.453488e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.069240e-06	k: 0	n:3450000
Cons ci ratio: 8.307702e-02	ci left: 6.181299e-04	ci right 6.719893e-04	k: 2224	n:3450000
KS ci ratio: 2.398908e-01	ci left: 6.811374e-05	ci right 8.694521e-05	k: 266	n:3450000
PIK3CA   3450000 perm   5302 sec   (651 perm/sec)   p_kst 7.710145e-05   p_cons 6.446377e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.066150e-06	k: 0	n:3460000
Cons ci ratio: 8.298385e-02	ci left: 6.177585e-04	ci right 6.715222e-04	k: 2229	n:3460000
KS ci ratio: 2.389973e-01	ci left: 6.846024e-05	ci right 8.730657e-05	k: 268	n:3460000
PIK3CA   3460000 perm   5331 sec   (649 perm/sec)   p_kst 7.745665e-05   p_cons 6.442197e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.063077e-06	k: 0	n:3470000
Cons ci ratio: 8.290955e-02	ci left: 6.171070e-04	ci right 6.707637e-04	k: 2233	n:3470000
KS ci ratio: 2.389973e-01	ci left: 6.826295e-05	ci right 8.705497e-05	k: 268	n:3470000
PIK3CA   3470000 perm   5361 sec   (647 perm/sec)   p_kst 7.723343e-05   p_cons 6.435159e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.060022e-06	k: 0	n:3480000
Cons ci ratio: 8.274302e-02	ci left: 6.178664e-04	ci right 6.714759e-04	k: 2242	n:3480000
KS ci ratio: 2.381137e-01	ci left: 6.860716e-05	ci right 8.741381e-05	k: 270	n:3480000
PIK3CA   3480000 perm   5389 sec   (646 perm/sec)   p_kst 7.758621e-05   p_cons 6.442529e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.056985e-06	k: 0	n:3490000
Cons ci ratio: 8.257748e-02	ci left: 6.186215e-04	ci right 6.721840e-04	k: 2251	n:3490000
KS ci ratio: 2.376756e-01	ci left: 6.868003e-05	ci right 8.746692e-05	k: 271	n:3490000
PIK3CA   3490000 perm   5417 sec   (644 perm/sec)   p_kst 7.765043e-05   p_cons 6.449857e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.053965e-06	k: 0	n:3500000
Cons ci ratio: 8.241294e-02	ci left: 6.193724e-04	ci right 6.728879e-04	k: 2260	n:3500000
KS ci ratio: 2.376756e-01	ci left: 6.848380e-05	ci right 8.721701e-05	k: 271	n:3500000
PIK3CA   3500000 perm   5446 sec   (643 perm/sec)   p_kst 7.742857e-05   p_cons 6.457143e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.050962e-06	k: 0	n:3510000
Cons ci ratio: 8.230381e-02	ci left: 6.192820e-04	ci right 6.727155e-04	k: 2266	n:3510000
KS ci ratio: 2.372399e-01	ci left: 6.855664e-05	ci right 8.727035e-05	k: 272	n:3510000
PIK3CA   3510000 perm   5474 sec   (641 perm/sec)   p_kst 7.749288e-05   p_cons 6.455840e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.047977e-06	k: 0	n:3520000
Cons ci ratio: 8.219512e-02	ci left: 6.191922e-04	ci right 6.725439e-04	k: 2272	n:3520000
KS ci ratio: 2.363756e-01	ci left: 6.889635e-05	ci right 8.762425e-05	k: 274	n:3520000
PIK3CA   3520000 perm   5503 sec   (640 perm/sec)   p_kst 7.784091e-05   p_cons 6.454545e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.045008e-06	k: 0	n:3530000
Cons ci ratio: 8.208685e-02	ci left: 6.191029e-04	ci right 6.723733e-04	k: 2278	n:3530000
KS ci ratio: 2.359470e-01	ci left: 6.896770e-05	ci right 8.767604e-05	k: 275	n:3530000
PIK3CA   3530000 perm   5531 sec   (638 perm/sec)   p_kst 7.790368e-05   p_cons 6.453258e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.042056e-06	k: 0	n:3540000
Cons ci ratio: 8.192522e-02	ci left: 6.198442e-04	ci right 6.730685e-04	k: 2287	n:3540000
KS ci ratio: 2.359470e-01	ci left: 6.877288e-05	ci right 8.742837e-05	k: 275	n:3540000
PIK3CA   3540000 perm   5560 sec   (637 perm/sec)   p_kst 7.768362e-05   p_cons 6.460452e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.039120e-06	k: 0	n:3550000
Cons ci ratio: 8.187160e-02	ci left: 6.189260e-04	ci right 6.720349e-04	k: 2290	n:3550000
KS ci ratio: 2.350967e-01	ci left: 6.910929e-05	ci right 8.777865e-05	k: 277	n:3550000
PIK3CA   3550000 perm   5588 sec   (635 perm/sec)   p_kst 7.802817e-05   p_cons 6.450704e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.036202e-06	k: 0	n:3560000
Cons ci ratio: 8.181809e-02	ci left: 6.180128e-04	ci right 6.710071e-04	k: 2293	n:3560000
KS ci ratio: 2.350968e-01	ci left: 6.891516e-05	ci right 8.753208e-05	k: 277	n:3560000
PIK3CA   3560000 perm   5617 sec   (634 perm/sec)   p_kst 7.780899e-05   p_cons 6.441011e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.033299e-06	k: 0	n:3570000
Cons ci ratio: 8.174688e-02	ci left: 6.173792e-04	ci right 6.702709e-04	k: 2297	n:3570000
KS ci ratio: 2.350968e-01	ci left: 6.872212e-05	ci right 8.728690e-05	k: 277	n:3570000
PIK3CA   3570000 perm   5646 sec   (632 perm/sec)   p_kst 7.759104e-05   p_cons 6.434174e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.030413e-06	k: 0	n:3580000
Cons ci ratio: 8.153421e-02	ci left: 6.189383e-04	ci right 6.718190e-04	k: 2309	n:3580000
KS ci ratio: 2.346751e-01	ci left: 6.879306e-05	ci right 8.733882e-05	k: 278	n:3580000
PIK3CA   3580000 perm   5676 sec   (631 perm/sec)   p_kst 7.765363e-05   p_cons 6.449721e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.027542e-06	k: 0	n:3590000
Cons ci ratio: 8.137581e-02	ci left: 6.196701e-04	ci right 6.725056e-04	k: 2318	n:3590000
KS ci ratio: 2.342556e-01	ci left: 6.886362e-05	ci right 8.739042e-05	k: 279	n:3590000
PIK3CA   3590000 perm   5705 sec   (629 perm/sec)   p_kst 7.771588e-05   p_cons 6.456825e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.024688e-06	k: 0	n:3600000
Cons ci ratio: 8.125326e-02	ci left: 6.198537e-04	ci right 6.726215e-04	k: 2325	n:3600000
KS ci ratio: 2.342557e-01	ci left: 6.867233e-05	ci right 8.714767e-05	k: 279	n:3600000
PIK3CA   3600000 perm   5733 sec   (628 perm/sec)   p_kst 7.750000e-05   p_cons 6.458333e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.021850e-06	k: 0	n:3610000
Cons ci ratio: 8.118351e-02	ci left: 6.192222e-04	ci right 6.718888e-04	k: 2329	n:3610000
KS ci ratio: 2.342557e-01	ci left: 6.848210e-05	ci right 8.690626e-05	k: 279	n:3610000
PIK3CA   3610000 perm   5763 sec   (626 perm/sec)   p_kst 7.728532e-05   p_cons 6.451524e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.019027e-06	k: 0	n:3620000
Cons ci ratio: 8.113134e-02	ci left: 6.183235e-04	ci right 6.708784e-04	k: 2332	n:3620000
KS ci ratio: 2.342557e-01	ci left: 6.829293e-05	ci right 8.666619e-05	k: 279	n:3620000
PIK3CA   3620000 perm   5791 sec   (625 perm/sec)   p_kst 7.707182e-05   p_cons 6.441989e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.016220e-06	k: 0	n:3630000
Cons ci ratio: 8.109664e-02	ci left: 6.171599e-04	ci right 6.695924e-04	k: 2334	n:3630000
KS ci ratio: 2.389977e-01	ci left: 6.525410e-05	ci right 8.321785e-05	k: 268	n:3630000
PIK3CA   3630000 perm   5821 sec   (624 perm/sec)   p_kst 7.382920e-05   p_cons 6.429752e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.013428e-06	k: 0	n:3640000
Cons ci ratio: 8.102729e-02	ci left: 6.165410e-04	ci right 6.688740e-04	k: 2338	n:3640000
KS ci ratio: 2.389978e-01	ci left: 6.507483e-05	ci right 8.298923e-05	k: 268	n:3640000
PIK3CA   3640000 perm   5850 sec   (622 perm/sec)   p_kst 7.362637e-05   p_cons 6.423077e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.010651e-06	k: 0	n:3650000
Cons ci ratio: 8.090631e-02	ci left: 6.167309e-04	ci right 6.689981e-04	k: 2345	n:3650000
KS ci ratio: 2.389978e-01	ci left: 6.489654e-05	ci right 8.276187e-05	k: 268	n:3650000
PIK3CA   3650000 perm   5879 sec   (621 perm/sec)   p_kst 7.342466e-05   p_cons 6.424658e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.007890e-06	k: 0	n:3660000
Cons ci ratio: 8.082025e-02	ci left: 6.163843e-04	ci right 6.685640e-04	k: 2350	n:3660000
KS ci ratio: 2.389978e-01	ci left: 6.471923e-05	ci right 8.253574e-05	k: 268	n:3660000
PIK3CA   3660000 perm   5908 sec   (619 perm/sec)   p_kst 7.322404e-05   p_cons 6.420765e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.005144e-06	k: 0	n:3670000
Cons ci ratio: 8.071732e-02	ci left: 6.163066e-04	ci right 6.684102e-04	k: 2356	n:3670000
KS ci ratio: 2.385548e-01	ci left: 6.479906e-05	ci right 8.259960e-05	k: 269	n:3670000
PIK3CA   3670000 perm   5938 sec   (618 perm/sec)   p_kst 7.329700e-05   p_cons 6.419619e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.002412e-06	k: 0	n:3680000
Cons ci ratio: 8.056362e-02	ci left: 6.170282e-04	ci right 6.690888e-04	k: 2365	n:3680000
KS ci ratio: 2.381142e-01	ci left: 6.487849e-05	ci right 8.266308e-05	k: 270	n:3680000
PIK3CA   3680000 perm   5967 sec   (617 perm/sec)   p_kst 7.336957e-05   p_cons 6.426630e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.996958e-07	k: 0	n:3690000
Cons ci ratio: 8.051263e-02	ci left: 6.161527e-04	ci right 6.681049e-04	k: 2368	n:3690000
KS ci ratio: 2.381143e-01	ci left: 6.470267e-05	ci right 8.243906e-05	k: 270	n:3690000
PIK3CA   3690000 perm   5997 sec   (615 perm/sec)   p_kst 7.317073e-05   p_cons 6.417344e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.969940e-07	k: 0	n:3700000
Cons ci ratio: 8.041087e-02	ci left: 6.160764e-04	ci right 6.679535e-04	k: 2374	n:3700000
KS ci ratio: 2.381143e-01	ci left: 6.452779e-05	ci right 8.221625e-05	k: 270	n:3700000
PIK3CA   3700000 perm   6027 sec   (614 perm/sec)   p_kst 7.297297e-05   p_cons 6.416216e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.943066e-07	k: 0	n:3710000
Cons ci ratio: 8.034327e-02	ci left: 6.154723e-04	ci right 6.672529e-04	k: 2378	n:3710000
KS ci ratio: 2.376762e-01	ci left: 6.460734e-05	ci right 8.228022e-05	k: 271	n:3710000
PIK3CA   3710000 perm   6057 sec   (613 perm/sec)   p_kst 7.304582e-05   p_cons 6.409704e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.916338e-07	k: 0	n:3720000
Cons ci ratio: 8.020850e-02	ci left: 6.159252e-04	ci right 6.676529e-04	k: 2386	n:3720000
KS ci ratio: 2.376762e-01	ci left: 6.443367e-05	ci right 8.205904e-05	k: 271	n:3720000
PIK3CA   3720000 perm   6087 sec   (611 perm/sec)   p_kst 7.284946e-05   p_cons 6.413978e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.889752e-07	k: 0	n:3730000
Cons ci ratio: 8.004098e-02	ci left: 6.169012e-04	ci right 6.685976e-04	k: 2396	n:3730000
KS ci ratio: 2.376762e-01	ci left: 6.426092e-05	ci right 8.183904e-05	k: 271	n:3730000
PIK3CA   3730000 perm   6117 sec   (610 perm/sec)   p_kst 7.265416e-05   p_cons 6.423592e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.863309e-07	k: 0	n:3740000
Cons ci ratio: 7.999098e-02	ci left: 6.160378e-04	ci right 6.676281e-04	k: 2399	n:3740000
KS ci ratio: 2.372405e-01	ci left: 6.434057e-05	ci right 8.190348e-05	k: 272	n:3740000
PIK3CA   3740000 perm   6147 sec   (608 perm/sec)   p_kst 7.272727e-05   p_cons 6.414439e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.837007e-07	k: 0	n:3750000
Cons ci ratio: 7.990780e-02	ci left: 6.157017e-04	ci right 6.672078e-04	k: 2404	n:3750000
KS ci ratio: 2.372405e-01	ci left: 6.416900e-05	ci right 8.168507e-05	k: 272	n:3750000
PIK3CA   3750000 perm   6176 sec   (607 perm/sec)   p_kst 7.253333e-05   p_cons 6.410667e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.810845e-07	k: 0	n:3760000
Cons ci ratio: 7.984145e-02	ci left: 6.151068e-04	ci right 6.665184e-04	k: 2408	n:3760000
KS ci ratio: 2.363762e-01	ci left: 6.449869e-05	ci right 8.203124e-05	k: 274	n:3760000
PIK3CA   3760000 perm   6206 sec   (606 perm/sec)   p_kst 7.287234e-05   p_cons 6.404255e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.784821e-07	k: 0	n:3770000
Cons ci ratio: 7.975874e-02	ci left: 6.147750e-04	ci right 6.661031e-04	k: 2413	n:3770000
KS ci ratio: 2.359476e-01	ci left: 6.457717e-05	ci right 8.209457e-05	k: 275	n:3770000
PIK3CA   3770000 perm   6236 sec   (605 perm/sec)   p_kst 7.294430e-05   p_cons 6.400531e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.758936e-07	k: 0	n:3780000
Cons ci ratio: 7.967628e-02	ci left: 6.144450e-04	ci right 6.656901e-04	k: 2418	n:3780000
KS ci ratio: 2.350973e-01	ci left: 6.490421e-05	ci right 8.243765e-05	k: 277	n:3780000
PIK3CA   3780000 perm   6266 sec   (603 perm/sec)   p_kst 7.328042e-05   p_cons 6.396825e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.733186e-07	k: 0	n:3790000
Cons ci ratio: 7.957766e-02	ci left: 6.143753e-04	ci right 6.655483e-04	k: 2424	n:3790000
KS ci ratio: 2.350973e-01	ci left: 6.473296e-05	ci right 8.222013e-05	k: 277	n:3790000
PIK3CA   3790000 perm   6296 sec   (602 perm/sec)   p_kst 7.308707e-05   p_cons 6.395778e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.707573e-07	k: 0	n:3800000
Cons ci ratio: 7.947940e-02	ci left: 6.143061e-04	ci right 6.654072e-04	k: 2430	n:3800000
KS ci ratio: 2.350973e-01	ci left: 6.456261e-05	ci right 8.200377e-05	k: 277	n:3800000
PIK3CA   3800000 perm   6327 sec   (601 perm/sec)   p_kst 7.289474e-05   p_cons 6.394737e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.682094e-07	k: 0	n:3810000
Cons ci ratio: 7.943044e-02	ci left: 6.134655e-04	ci right 6.644637e-04	k: 2433	n:3810000
KS ci ratio: 2.350974e-01	ci left: 6.439315e-05	ci right 8.178853e-05	k: 277	n:3810000
PIK3CA   3810000 perm   6358 sec   (599 perm/sec)   p_kst 7.270341e-05   p_cons 6.385827e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.656748e-07	k: 0	n:3820000
Cons ci ratio: 7.930021e-02	ci left: 6.139123e-04	ci right 6.648601e-04	k: 2441	n:3820000
KS ci ratio: 2.346757e-01	ci left: 6.447096e-05	ci right 8.185158e-05	k: 278	n:3820000
PIK3CA   3820000 perm   6388 sec   (598 perm/sec)   p_kst 7.277487e-05   p_cons 6.390052e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.631534e-07	k: 0	n:3830000
Cons ci ratio: 7.915445e-02	ci left: 6.146127e-04	ci right 6.655206e-04	k: 2450	n:3830000
KS ci ratio: 2.346757e-01	ci left: 6.430263e-05	ci right 8.163787e-05	k: 278	n:3830000
PIK3CA   3830000 perm   6419 sec   (597 perm/sec)   p_kst 7.258486e-05   p_cons 6.396867e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.606452e-07	k: 0	n:3840000
Cons ci ratio: 7.907385e-02	ci left: 6.142884e-04	ci right 6.651153e-04	k: 2455	n:3840000
KS ci ratio: 2.346757e-01	ci left: 6.413517e-05	ci right 8.142528e-05	k: 278	n:3840000
PIK3CA   3840000 perm   6450 sec   (595 perm/sec)   p_kst 7.239583e-05   p_cons 6.393229e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.581500e-07	k: 0	n:3850000
Cons ci ratio: 7.897745e-02	ci left: 6.142205e-04	ci right 6.649769e-04	k: 2461	n:3850000
KS ci ratio: 2.346757e-01	ci left: 6.396859e-05	ci right 8.121378e-05	k: 278	n:3850000
PIK3CA   3850000 perm   6480 sec   (594 perm/sec)   p_kst 7.220779e-05   p_cons 6.392208e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.556678e-07	k: 0	n:3860000
Cons ci ratio: 7.891339e-02	ci left: 6.136451e-04	ci right 6.643109e-04	k: 2465	n:3860000
KS ci ratio: 2.342563e-01	ci left: 6.404672e-05	ci right 8.127764e-05	k: 279	n:3860000
PIK3CA   3860000 perm   6511 sec   (593 perm/sec)   p_kst 7.227979e-05   p_cons 6.386010e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.531984e-07	k: 0	n:3870000
Cons ci ratio: 7.881757e-02	ci left: 6.135793e-04	ci right 6.641753e-04	k: 2471	n:3870000
KS ci ratio: 2.342563e-01	ci left: 6.388122e-05	ci right 8.106762e-05	k: 279	n:3870000
PIK3CA   3870000 perm   6542 sec   (592 perm/sec)   p_kst 7.209302e-05   p_cons 6.385013e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.507417e-07	k: 0	n:3880000
Cons ci ratio: 7.869032e-02	ci left: 6.140191e-04	ci right 6.645660e-04	k: 2479	n:3880000
KS ci ratio: 2.342563e-01	ci left: 6.371658e-05	ci right 8.085869e-05	k: 279	n:3880000
PIK3CA   3880000 perm   6573 sec   (590 perm/sec)   p_kst 7.190722e-05   p_cons 6.389175e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.482976e-07	k: 0	n:3890000
Cons ci ratio: 7.864281e-02	ci left: 6.131967e-04	ci right 6.636440e-04	k: 2482	n:3890000
KS ci ratio: 2.334241e-01	ci left: 6.403680e-05	ci right 8.119503e-05	k: 281	n:3890000
PIK3CA   3890000 perm   6604 sec   (589 perm/sec)   p_kst 7.223650e-05   p_cons 6.380463e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.458661e-07	k: 0	n:3900000
Cons ci ratio: 7.851641e-02	ci left: 6.136354e-04	ci right 6.640339e-04	k: 2490	n:3900000
KS ci ratio: 2.330113e-01	ci left: 6.411404e-05	ci right 8.125820e-05	k: 282	n:3900000
PIK3CA   3900000 perm   6635 sec   (588 perm/sec)   p_kst 7.230769e-05   p_cons 6.384615e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.434470e-07	k: 0	n:3910000
Cons ci ratio: 7.842202e-02	ci left: 6.135704e-04	ci right 6.639002e-04	k: 2496	n:3910000
KS ci ratio: 2.326007e-01	ci left: 6.419090e-05	ci right 8.132102e-05	k: 283	n:3910000
PIK3CA   3910000 perm   6667 sec   (587 perm/sec)   p_kst 7.237852e-05   p_cons 6.383632e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.410402e-07	k: 0	n:3920000
Cons ci ratio: 7.831232e-02	ci left: 6.137559e-04	ci right 6.640273e-04	k: 2503	n:3920000
KS ci ratio: 2.321923e-01	ci left: 6.426740e-05	ci right 8.138350e-05	k: 284	n:3920000
PIK3CA   3920000 perm   6699 sec   (585 perm/sec)   p_kst 7.244898e-05   p_cons 6.385204e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.386457e-07	k: 0	n:3930000
Cons ci ratio: 7.821867e-02	ci left: 6.136910e-04	ci right 6.638943e-04	k: 2509	n:3930000
KS ci ratio: 2.321923e-01	ci left: 6.410387e-05	ci right 8.117642e-05	k: 284	n:3930000
PIK3CA   3930000 perm   6731 sec   (584 perm/sec)   p_kst 7.226463e-05   p_cons 6.384224e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.362634e-07	k: 0	n:3940000
Cons ci ratio: 7.806328e-02	ci left: 6.146219e-04	ci right 6.647969e-04	k: 2519	n:3940000
KS ci ratio: 2.317860e-01	ci left: 6.418023e-05	ci right 8.123892e-05	k: 285	n:3940000
PIK3CA   3940000 perm   6763 sec   (583 perm/sec)   p_kst 7.233503e-05   p_cons 6.393401e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.338931e-07	k: 0	n:3950000
Cons ci ratio: 7.798597e-02	ci left: 6.143070e-04	ci right 6.644044e-04	k: 2524	n:3950000
KS ci ratio: 2.317860e-01	ci left: 6.401774e-05	ci right 8.103325e-05	k: 285	n:3950000
PIK3CA   3950000 perm   6794 sec   (581 perm/sec)   p_kst 7.215190e-05   p_cons 6.389873e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.315348e-07	k: 0	n:3960000
Cons ci ratio: 7.790888e-02	ci left: 6.139938e-04	ci right 6.640138e-04	k: 2529	n:3960000
KS ci ratio: 2.313819e-01	ci left: 6.409396e-05	ci right 8.109577e-05	k: 286	n:3960000
PIK3CA   3960000 perm   6825 sec   (580 perm/sec)   p_kst 7.222222e-05   p_cons 6.386364e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.291883e-07	k: 0	n:3970000
Cons ci ratio: 7.774002e-02	ci left: 6.151640e-04	ci right 6.651659e-04	k: 2540	n:3970000
KS ci ratio: 2.309798e-01	ci left: 6.416982e-05	ci right 8.115795e-05	k: 287	n:3970000
PIK3CA   3970000 perm   6857 sec   (579 perm/sec)   p_kst 7.229219e-05   p_cons 6.397985e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.268537e-07	k: 0	n:3980000
Cons ci ratio: 7.760269e-02	ci left: 6.158358e-04	ci right 6.657999e-04	k: 2549	n:3980000
KS ci ratio: 2.301819e-01	ci left: 6.448207e-05	ci right 8.148552e-05	k: 289	n:3980000
PIK3CA   3980000 perm   6888 sec   (578 perm/sec)   p_kst 7.261307e-05   p_cons 6.404523e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.245308e-07	k: 0	n:3990000
Cons ci ratio: 7.755711e-02	ci left: 6.150296e-04	ci right 6.648977e-04	k: 2552	n:3990000
KS ci ratio: 2.301819e-01	ci left: 6.432046e-05	ci right 8.128130e-05	k: 289	n:3990000
PIK3CA   3990000 perm   6920 sec   (577 perm/sec)   p_kst 7.243108e-05   p_cons 6.395990e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.222194e-07	k: 0	n:4000000
Cons ci ratio: 7.746614e-02	ci left: 6.149630e-04	ci right 6.647645e-04	k: 2558	n:4000000
KS ci ratio: 2.297861e-01	ci left: 6.439526e-05	ci right 8.134247e-05	k: 290	n:4000000
PIK3CA   4000000 perm   6951 sec   (575 perm/sec)   p_kst 7.250000e-05   p_cons 6.395000e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.199196e-07	k: 0	n:4010000
Cons ci ratio: 7.739058e-02	ci left: 6.146522e-04	ci right 6.643777e-04	k: 2563	n:4010000
KS ci ratio: 2.297861e-01	ci left: 6.423467e-05	ci right 8.113962e-05	k: 290	n:4010000
PIK3CA   4010000 perm   6984 sec   (574 perm/sec)   p_kst 7.231920e-05   p_cons 6.391521e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.176313e-07	k: 0	n:4020000
Cons ci ratio: 7.734538e-02	ci left: 6.138550e-04	ci right 6.634858e-04	k: 2566	n:4020000
KS ci ratio: 2.293923e-01	ci left: 6.430933e-05	ci right 8.120082e-05	k: 291	n:4020000
PIK3CA   4020000 perm   7017 sec   (573 perm/sec)   p_kst 7.238806e-05   p_cons 6.383085e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.153543e-07	k: 0	n:4030000
Cons ci ratio: 7.725515e-02	ci left: 6.137918e-04	ci right 6.633570e-04	k: 2572	n:4030000
KS ci ratio: 2.290005e-01	ci left: 6.438365e-05	ci right 8.126169e-05	k: 292	n:4030000
PIK3CA   4030000 perm   7049 sec   (572 perm/sec)   p_kst 7.245658e-05   p_cons 6.382134e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.130886e-07	k: 0	n:4040000
Cons ci ratio: 7.716523e-02	ci left: 6.137290e-04	ci right 6.632289e-04	k: 2578	n:4040000
KS ci ratio: 2.286107e-01	ci left: 6.445762e-05	ci right 8.132224e-05	k: 293	n:4040000
PIK3CA   4040000 perm   7081 sec   (571 perm/sec)   p_kst 7.252475e-05   p_cons 6.381188e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.108340e-07	k: 0	n:4050000
Cons ci ratio: 7.707563e-02	ci left: 6.136665e-04	ci right 6.631013e-04	k: 2584	n:4050000
KS ci ratio: 2.286107e-01	ci left: 6.429847e-05	ci right 8.112144e-05	k: 293	n:4050000
PIK3CA   4050000 perm   7114 sec   (569 perm/sec)   p_kst 7.234568e-05   p_cons 6.380247e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.085906e-07	k: 0	n:4060000
Cons ci ratio: 7.701609e-02	ci left: 6.131213e-04	ci right 6.624723e-04	k: 2588	n:4060000
KS ci ratio: 2.286107e-01	ci left: 6.414010e-05	ci right 8.092164e-05	k: 293	n:4060000
PIK3CA   4060000 perm   7146 sec   (568 perm/sec)   p_kst 7.216749e-05   p_cons 6.374384e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.063582e-07	k: 0	n:4070000
Cons ci ratio: 7.695669e-02	ci left: 6.125787e-04	ci right 6.618463e-04	k: 2592	n:4070000
KS ci ratio: 2.286108e-01	ci left: 6.398250e-05	ci right 8.072281e-05	k: 293	n:4070000
PIK3CA   4070000 perm   7178 sec   (567 perm/sec)   p_kst 7.199017e-05   p_cons 6.368550e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.041367e-07	k: 0	n:4080000
Cons ci ratio: 7.683823e-02	ci left: 6.130004e-04	ci right 6.622226e-04	k: 2600	n:4080000
KS ci ratio: 2.286108e-01	ci left: 6.382568e-05	ci right 8.052496e-05	k: 293	n:4080000
PIK3CA   4080000 perm   7210 sec   (566 perm/sec)   p_kst 7.181373e-05   p_cons 6.372549e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.019261e-07	k: 0	n:4090000
Cons ci ratio: 7.670561e-02	ci left: 6.136599e-04	ci right 6.628462e-04	k: 2609	n:4090000
KS ci ratio: 2.282230e-01	ci left: 6.390014e-05	ci right 8.058654e-05	k: 294	n:4090000
PIK3CA   4090000 perm   7243 sec   (565 perm/sec)   p_kst 7.188264e-05   p_cons 6.378973e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.997263e-07	k: 0	n:4100000
Cons ci ratio: 7.655905e-02	ci left: 6.145554e-04	ci right 6.637152e-04	k: 2619	n:4100000
KS ci ratio: 2.278371e-01	ci left: 6.397426e-05	ci right 8.064780e-05	k: 295	n:4100000
PIK3CA   4100000 perm   7275 sec   (564 perm/sec)   p_kst 7.195122e-05   p_cons 6.387805e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.975372e-07	k: 0	n:4110000
Cons ci ratio: 7.641333e-02	ci left: 6.154467e-04	ci right 6.645799e-04	k: 2629	n:4110000
KS ci ratio: 2.274532e-01	ci left: 6.404804e-05	ci right 8.070874e-05	k: 296	n:4110000
PIK3CA   4110000 perm   7308 sec   (562 perm/sec)   p_kst 7.201946e-05   p_cons 6.396594e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.953587e-07	k: 0	n:4120000
Cons ci ratio: 7.632632e-02	ci left: 6.153814e-04	ci right 6.644510e-04	k: 2635	n:4120000
KS ci ratio: 2.274532e-01	ci left: 6.389258e-05	ci right 8.051285e-05	k: 296	n:4120000
PIK3CA   4120000 perm   7340 sec   (561 perm/sec)   p_kst 7.184466e-05   p_cons 6.395631e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.931908e-07	k: 0	n:4130000
Cons ci ratio: 7.623961e-02	ci left: 6.153165e-04	ci right 6.643227e-04	k: 2641	n:4130000
KS ci ratio: 2.270713e-01	ci left: 6.396622e-05	ci right 8.057379e-05	k: 297	n:4130000
PIK3CA   4130000 perm   7374 sec   (560 perm/sec)   p_kst 7.191283e-05   p_cons 6.394673e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.910333e-07	k: 0	n:4140000
Cons ci ratio: 7.603834e-02	ci left: 6.171475e-04	ci right 6.661640e-04	k: 2655	n:4140000
KS ci ratio: 2.270713e-01	ci left: 6.381172e-05	ci right 8.037917e-05	k: 297	n:4140000
PIK3CA   4140000 perm   7406 sec   (559 perm/sec)   p_kst 7.173913e-05   p_cons 6.413043e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.888862e-07	k: 0	n:4150000
Cons ci ratio: 7.590981e-02	ci left: 6.177879e-04	ci right 6.667686e-04	k: 2664	n:4150000
KS ci ratio: 2.270713e-01	ci left: 6.365795e-05	ci right 8.018548e-05	k: 297	n:4150000
PIK3CA   4150000 perm   7439 sec   (558 perm/sec)   p_kst 7.156627e-05   p_cons 6.419277e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.867495e-07	k: 0	n:4160000
Cons ci ratio: 7.582451e-02	ci left: 6.177177e-04	ci right 6.666355e-04	k: 2670	n:4160000
KS ci ratio: 2.270713e-01	ci left: 6.350493e-05	ci right 7.999273e-05	k: 297	n:4160000
PIK3CA   4160000 perm   7472 sec   (557 perm/sec)   p_kst 7.139423e-05   p_cons 6.418269e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.846230e-07	k: 0	n:4170000
Cons ci ratio: 7.572534e-02	ci left: 6.178833e-04	ci right 6.667473e-04	k: 2677	n:4170000
KS ci ratio: 2.263131e-01	ci left: 6.380502e-05	ci right 8.030771e-05	k: 299	n:4170000
PIK3CA   4170000 perm   7505 sec   (556 perm/sec)   p_kst 7.170264e-05   p_cons 6.419664e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.825067e-07	k: 0	n:4180000
Cons ci ratio: 7.564066e-02	ci left: 6.178133e-04	ci right 6.666148e-04	k: 2683	n:4180000
KS ci ratio: 2.263132e-01	ci left: 6.365238e-05	ci right 8.011558e-05	k: 299	n:4180000
PIK3CA   4180000 perm   7538 sec   (555 perm/sec)   p_kst 7.153110e-05   p_cons 6.418660e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.804004e-07	k: 0	n:4190000
Cons ci ratio: 7.558438e-02	ci left: 6.172754e-04	ci right 6.659965e-04	k: 2687	n:4190000
KS ci ratio: 2.263132e-01	ci left: 6.350046e-05	ci right 7.992438e-05	k: 299	n:4190000
PIK3CA   4190000 perm   7571 sec   (553 perm/sec)   p_kst 7.136038e-05   p_cons 6.412888e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.783042e-07	k: 0	n:4200000
Cons ci ratio: 7.547214e-02	ci left: 6.176745e-04	ci right 6.663515e-04	k: 2695	n:4200000
KS ci ratio: 2.263132e-01	ci left: 6.334927e-05	ci right 7.973408e-05	k: 299	n:4200000
PIK3CA   4200000 perm   7604 sec   (552 perm/sec)   p_kst 7.119048e-05   p_cons 6.416667e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.762180e-07	k: 0	n:4210000
Cons ci ratio: 7.543021e-02	ci left: 6.169065e-04	ci right 6.654948e-04	k: 2698	n:4210000
KS ci ratio: 2.259369e-01	ci left: 6.342287e-05	ci right 7.979565e-05	k: 300	n:4210000
PIK3CA   4210000 perm   7638 sec   (551 perm/sec)   p_kst 7.125891e-05   p_cons 6.408551e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.741417e-07	k: 0	n:4220000
Cons ci ratio: 7.537440e-02	ci left: 6.163746e-04	ci right 6.648835e-04	k: 2702	n:4220000
KS ci ratio: 2.259370e-01	ci left: 6.327258e-05	ci right 7.960656e-05	k: 300	n:4220000
PIK3CA   4220000 perm   7671 sec   (550 perm/sec)   p_kst 7.109005e-05   p_cons 6.402844e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.720751e-07	k: 0	n:4230000
Cons ci ratio: 7.519374e-02	ci left: 6.179329e-04	ci right 6.664428e-04	k: 2715	n:4230000
KS ci ratio: 2.259370e-01	ci left: 6.312300e-05	ci right 7.941837e-05	k: 300	n:4230000
PIK3CA   4230000 perm   7706 sec   (549 perm/sec)   p_kst 7.092199e-05   p_cons 6.418440e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.700184e-07	k: 0	n:4240000
Cons ci ratio: 7.513845e-02	ci left: 6.174012e-04	ci right 6.658322e-04	k: 2719	n:4240000
KS ci ratio: 2.255626e-01	ci left: 6.319664e-05	ci right 7.948022e-05	k: 301	n:4240000
PIK3CA   4240000 perm   7739 sec   (548 perm/sec)   p_kst 7.099057e-05   p_cons 6.412736e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.679713e-07	k: 0	n:4250000
Cons ci ratio: 7.506949e-02	ci left: 6.171028e-04	ci right 6.654641e-04	k: 2724	n:4250000
KS ci ratio: 2.255626e-01	ci left: 6.304794e-05	ci right 7.929321e-05	k: 301	n:4250000
PIK3CA   4250000 perm   7773 sec   (547 perm/sec)   p_kst 7.082353e-05   p_cons 6.409412e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.659338e-07	k: 0	n:4260000
Cons ci ratio: 7.495953e-02	ci left: 6.174969e-04	ci right 6.658151e-04	k: 2732	n:4260000
KS ci ratio: 2.251901e-01	ci left: 6.312143e-05	ci right 7.935505e-05	k: 302	n:4260000
PIK3CA   4260000 perm   7808 sec   (546 perm/sec)   p_kst 7.089202e-05   p_cons 6.413146e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.639058e-07	k: 0	n:4270000
Cons ci ratio: 7.491845e-02	ci left: 6.167402e-04	ci right 6.649716e-04	k: 2735	n:4270000
KS ci ratio: 2.251901e-01	ci left: 6.297360e-05	ci right 7.916921e-05	k: 302	n:4270000
PIK3CA   4270000 perm   7842 sec   (545 perm/sec)   p_kst 7.072600e-05   p_cons 6.405152e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.618874e-07	k: 0	n:4280000
Cons ci ratio: 7.485010e-02	ci left: 6.164456e-04	ci right 6.646080e-04	k: 2740	n:4280000
KS ci ratio: 2.251901e-01	ci left: 6.282647e-05	ci right 7.898423e-05	k: 302	n:4280000
PIK3CA   4280000 perm   7875 sec   (543 perm/sec)   p_kst 7.056075e-05   p_cons 6.401869e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.598783e-07	k: 0	n:4290000
Cons ci ratio: 7.478194e-02	ci left: 6.161523e-04	ci right 6.642461e-04	k: 2745	n:4290000
KS ci ratio: 2.244505e-01	ci left: 6.311997e-05	ci right 7.929253e-05	k: 304	n:4290000
PIK3CA   4290000 perm   7909 sec   (542 perm/sec)   p_kst 7.086247e-05   p_cons 6.398601e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.578786e-07	k: 0	n:4300000
Cons ci ratio: 7.471396e-02	ci left: 6.158605e-04	ci right 6.638858e-04	k: 2750	n:4300000
KS ci ratio: 2.244506e-01	ci left: 6.297318e-05	ci right 7.910813e-05	k: 304	n:4300000
PIK3CA   4300000 perm   7943 sec   (541 perm/sec)   p_kst 7.069767e-05   p_cons 6.395349e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.558881e-07	k: 0	n:4310000
Cons ci ratio: 7.453799e-02	ci left: 6.173915e-04	ci right 6.654180e-04	k: 2763	n:4310000
KS ci ratio: 2.237182e-01	ci left: 6.326506e-05	ci right 7.941462e-05	k: 306	n:4310000
PIK3CA   4310000 perm   7978 sec   (540 perm/sec)   p_kst 7.099768e-05   p_cons 6.410673e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.539069e-07	k: 0	n:4320000
Cons ci ratio: 7.443034e-02	ci left: 6.177798e-04	ci right 6.657640e-04	k: 2771	n:4320000
KS ci ratio: 2.233547e-01	ci left: 6.333713e-05	ci right 7.947521e-05	k: 307	n:4320000
PIK3CA   4320000 perm   8012 sec   (539 perm/sec)   p_kst 7.106481e-05   p_cons 6.414352e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.519348e-07	k: 0	n:4330000
Cons ci ratio: 7.432316e-02	ci left: 6.181662e-04	ci right 6.661084e-04	k: 2779	n:4330000
KS ci ratio: 2.226330e-01	ci left: 6.362696e-05	ci right 7.977932e-05	k: 309	n:4330000
PIK3CA   4330000 perm   8047 sec   (538 perm/sec)   p_kst 7.136259e-05   p_cons 6.418014e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.499719e-07	k: 0	n:4340000
Cons ci ratio: 7.422976e-02	ci left: 6.183248e-04	ci right 6.662164e-04	k: 2786	n:4340000
KS ci ratio: 2.222748e-01	ci left: 6.369793e-05	ci right 7.983873e-05	k: 310	n:4340000
PIK3CA   4340000 perm   8082 sec   (537 perm/sec)   p_kst 7.142857e-05   p_cons 6.419355e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.480179e-07	k: 0	n:4350000
Cons ci ratio: 7.416327e-02	ci left: 6.180315e-04	ci right 6.658556e-04	k: 2791	n:4350000
KS ci ratio: 2.215635e-01	ci left: 6.398571e-05	ci right 8.014047e-05	k: 312	n:4350000
PIK3CA   4350000 perm   8116 sec   (536 perm/sec)   p_kst 7.172414e-05   p_cons 6.416092e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.460729e-07	k: 0	n:4360000
Cons ci ratio: 7.409697e-02	ci left: 6.177395e-04	ci right 6.654965e-04	k: 2796	n:4360000
KS ci ratio: 2.208590e-01	ci left: 6.427226e-05	ci right 8.044075e-05	k: 314	n:4360000
PIK3CA   4360000 perm   8150 sec   (535 perm/sec)   p_kst 7.201835e-05   p_cons 6.412844e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.441368e-07	k: 0	n:4370000
Cons ci ratio: 7.399121e-02	ci left: 6.181227e-04	ci right 6.658382e-04	k: 2804	n:4370000
KS ci ratio: 2.208590e-01	ci left: 6.412518e-05	ci right 8.025668e-05	k: 314	n:4370000
PIK3CA   4370000 perm   8185 sec   (534 perm/sec)   p_kst 7.185355e-05   p_cons 6.416476e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.422096e-07	k: 0	n:4380000
Cons ci ratio: 7.389906e-02	ci left: 6.182801e-04	ci right 6.659457e-04	k: 2811	n:4380000
KS ci ratio: 2.201611e-01	ci left: 6.441018e-05	ci right 8.055524e-05	k: 316	n:4380000
PIK3CA   4380000 perm   8220 sec   (533 perm/sec)   p_kst 7.214612e-05   p_cons 6.417808e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.402911e-07	k: 0	n:4390000
Cons ci ratio: 7.383346e-02	ci left: 6.179896e-04	ci right 6.655887e-04	k: 2816	n:4390000
KS ci ratio: 2.198147e-01	ci left: 6.447870e-05	ci right 8.061207e-05	k: 317	n:4390000
PIK3CA   4390000 perm   8256 sec   (532 perm/sec)   p_kst 7.220957e-05   p_cons 6.414579e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.383813e-07	k: 0	n:4400000
Cons ci ratio: 7.379420e-02	ci left: 6.172543e-04	ci right 6.647704e-04	k: 2819	n:4400000
KS ci ratio: 2.194699e-01	ci left: 6.454693e-05	ci right 8.066861e-05	k: 318	n:4400000
PIK3CA   4400000 perm   8291 sec   (531 perm/sec)   p_kst 7.227273e-05   p_cons 6.406818e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.364803e-07	k: 0	n:4410000
Cons ci ratio: 7.367671e-02	ci left: 6.178579e-04	ci right 6.653415e-04	k: 2828	n:4410000
KS ci ratio: 2.194699e-01	ci left: 6.440056e-05	ci right 8.048569e-05	k: 318	n:4410000
PIK3CA   4410000 perm   8326 sec   (530 perm/sec)   p_kst 7.210884e-05   p_cons 6.412698e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.345878e-07	k: 0	n:4420000
Cons ci ratio: 7.355977e-02	ci left: 6.184587e-04	ci right 6.659098e-04	k: 2837	n:4420000
KS ci ratio: 2.191267e-01	ci left: 6.446868e-05	ci right 8.054225e-05	k: 319	n:4420000
PIK3CA   4420000 perm   8362 sec   (529 perm/sec)   p_kst 7.217195e-05   p_cons 6.418552e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.327038e-07	k: 0	n:4430000
Cons ci ratio: 7.348214e-02	ci left: 6.183921e-04	ci right 6.657859e-04	k: 2843	n:4430000
KS ci ratio: 2.191267e-01	ci left: 6.432315e-05	ci right 8.036044e-05	k: 319	n:4430000
PIK3CA   4430000 perm   8397 sec   (528 perm/sec)   p_kst 7.200903e-05   p_cons 6.417607e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.308284e-07	k: 0	n:4440000
Cons ci ratio: 7.339187e-02	ci left: 6.185470e-04	ci right 6.658919e-04	k: 2850	n:4440000
KS ci ratio: 2.191267e-01	ci left: 6.417828e-05	ci right 8.017945e-05	k: 319	n:4440000
PIK3CA   4440000 perm   8432 sec   (527 perm/sec)   p_kst 7.184685e-05   p_cons 6.418919e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.289613e-07	k: 0	n:4450000
Cons ci ratio: 7.330193e-02	ci left: 6.187012e-04	ci right 6.659974e-04	k: 2857	n:4450000
KS ci ratio: 2.191268e-01	ci left: 6.403405e-05	ci right 7.999927e-05	k: 319	n:4450000
PIK3CA   4450000 perm   8468 sec   (525 perm/sec)   p_kst 7.168539e-05   p_cons 6.420225e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.271027e-07	k: 0	n:4460000
Cons ci ratio: 7.319954e-02	ci left: 6.190748e-04	ci right 6.663307e-04	k: 2865	n:4460000
KS ci ratio: 2.191268e-01	ci left: 6.389048e-05	ci right 7.981990e-05	k: 319	n:4460000
PIK3CA   4460000 perm   8504 sec   (524 perm/sec)   p_kst 7.152466e-05   p_cons 6.423767e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.252523e-07	k: 0	n:4470000
Cons ci ratio: 7.309758e-02	ci left: 6.194469e-04	ci right 6.666625e-04	k: 2873	n:4470000
KS ci ratio: 2.191268e-01	ci left: 6.374755e-05	ci right 7.964133e-05	k: 319	n:4470000
PIK3CA   4470000 perm   8539 sec   (523 perm/sec)   p_kst 7.136465e-05   p_cons 6.427293e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.234103e-07	k: 0	n:4480000
Cons ci ratio: 7.302140e-02	ci left: 6.193790e-04	ci right 6.665382e-04	k: 2879	n:4480000
KS ci ratio: 2.187852e-01	ci left: 6.381623e-05	ci right 7.969900e-05	k: 320	n:4480000
PIK3CA   4480000 perm   8575 sec   (522 perm/sec)   p_kst 7.142857e-05   p_cons 6.426339e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.215764e-07	k: 0	n:4490000
Cons ci ratio: 7.293281e-02	ci left: 6.195301e-04	ci right 6.666411e-04	k: 2886	n:4490000
KS ci ratio: 2.181068e-01	ci left: 6.409516e-05	ci right 7.999126e-05	k: 322	n:4490000
PIK3CA   4490000 perm   8610 sec   (521 perm/sec)   p_kst 7.171492e-05   p_cons 6.427617e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.197507e-07	k: 0	n:4500000
Cons ci ratio: 7.288236e-02	ci left: 6.190260e-04	ci right 6.660648e-04	k: 2890	n:4500000
KS ci ratio: 2.174346e-01	ci left: 6.437294e-05	ci right 8.028215e-05	k: 324	n:4500000
PIK3CA   4500000 perm   8645 sec   (521 perm/sec)   p_kst 7.200000e-05   p_cons 6.422222e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.179330e-07	k: 0	n:4510000
Cons ci ratio: 7.279428e-02	ci left: 6.191773e-04	ci right 6.661683e-04	k: 2897	n:4510000
KS ci ratio: 2.164379e-01	ci left: 6.485925e-05	ci right 8.080541e-05	k: 327	n:4510000
PIK3CA   4510000 perm   8681 sec   (520 perm/sec)   p_kst 7.250554e-05   p_cons 6.423503e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.161234e-07	k: 0	n:4520000
Cons ci ratio: 7.269400e-02	ci left: 6.195452e-04	ci right 6.664966e-04	k: 2905	n:4520000
KS ci ratio: 2.161087e-01	ci left: 6.492501e-05	ci right 8.085984e-05	k: 328	n:4520000
PIK3CA   4520000 perm   8718 sec   (518 perm/sec)   p_kst 7.256637e-05   p_cons 6.426991e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.143218e-07	k: 0	n:4530000
Cons ci ratio: 7.264404e-02	ci left: 6.190445e-04	ci right 6.659243e-04	k: 2909	n:4530000
KS ci ratio: 2.161087e-01	ci left: 6.478169e-05	ci right 8.068134e-05	k: 328	n:4530000
PIK3CA   4530000 perm   8753 sec   (518 perm/sec)   p_kst 7.240618e-05   p_cons 6.421634e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.125282e-07	k: 0	n:4540000
Cons ci ratio: 7.258172e-02	ci left: 6.187623e-04	ci right 6.655789e-04	k: 2914	n:4540000
KS ci ratio: 2.161087e-01	ci left: 6.463900e-05	ci right 8.050363e-05	k: 328	n:4540000
PIK3CA   4540000 perm   8789 sec   (517 perm/sec)   p_kst 7.224670e-05   p_cons 6.418502e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.107424e-07	k: 0	n:4550000
Cons ci ratio: 7.246991e-02	ci left: 6.193445e-04	ci right 6.661299e-04	k: 2923	n:4550000
KS ci ratio: 2.161088e-01	ci left: 6.449694e-05	ci right 8.032670e-05	k: 328	n:4550000
PIK3CA   4550000 perm   8824 sec   (516 perm/sec)   p_kst 7.208791e-05   p_cons 6.424176e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.089645e-07	k: 0	n:4560000
Cons ci ratio: 7.235862e-02	ci left: 6.199242e-04	ci right 6.666785e-04	k: 2932	n:4560000
KS ci ratio: 2.161088e-01	ci left: 6.435549e-05	ci right 8.015055e-05	k: 328	n:4560000
PIK3CA   4560000 perm   8860 sec   (515 perm/sec)   p_kst 7.192982e-05   p_cons 6.429825e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.071943e-07	k: 0	n:4570000
Cons ci ratio: 7.229703e-02	ci left: 6.196420e-04	ci right 6.663336e-04	k: 2937	n:4570000
KS ci ratio: 2.157811e-01	ci left: 6.442166e-05	ci right 8.020580e-05	k: 329	n:4570000
PIK3CA   4570000 perm   8896 sec   (514 perm/sec)   p_kst 7.199125e-05   p_cons 6.426696e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.054319e-07	k: 0	n:4580000
Cons ci ratio: 7.216203e-02	ci left: 6.206475e-04	ci right 6.673238e-04	k: 2948	n:4580000
KS ci ratio: 2.154549e-01	ci left: 6.448755e-05	ci right 8.026079e-05	k: 330	n:4580000
PIK3CA   4580000 perm   8932 sec   (513 perm/sec)   p_kst 7.205240e-05   p_cons 6.436681e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.036771e-07	k: 0	n:4590000
Cons ci ratio: 7.206434e-02	ci left: 6.210068e-04	ci right 6.676443e-04	k: 2956	n:4590000
KS ci ratio: 2.148069e-01	ci left: 6.475931e-05	ci right 8.054510e-05	k: 332	n:4590000
PIK3CA   4590000 perm   8968 sec   (512 perm/sec)   p_kst 7.233115e-05   p_cons 6.440087e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.019300e-07	k: 0	n:4600000
Cons ci ratio: 7.197919e-02	ci left: 6.211511e-04	ci right 6.677420e-04	k: 2963	n:4600000
KS ci ratio: 2.144850e-01	ci left: 6.482423e-05	ci right 8.059906e-05	k: 333	n:4600000
PIK3CA   4600000 perm   9004 sec   (511 perm/sec)   p_kst 7.239130e-05   p_cons 6.441304e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.001904e-07	k: 0	n:4610000
Cons ci ratio: 7.189434e-02	ci left: 6.212949e-04	ci right 6.678393e-04	k: 2970	n:4610000
KS ci ratio: 2.144851e-01	ci left: 6.468362e-05	ci right 8.042422e-05	k: 333	n:4610000
PIK3CA   4610000 perm   9041 sec   (510 perm/sec)   p_kst 7.223427e-05   p_cons 6.442516e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.984584e-07	k: 0	n:4620000
Cons ci ratio: 7.180979e-02	ci left: 6.214380e-04	ci right 6.679361e-04	k: 2977	n:4620000
KS ci ratio: 2.144851e-01	ci left: 6.454361e-05	ci right 8.025015e-05	k: 333	n:4620000
PIK3CA   4620000 perm   9078 sec   (509 perm/sec)   p_kst 7.207792e-05   p_cons 6.443723e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.967339e-07	k: 0	n:4630000
Cons ci ratio: 7.172554e-02	ci left: 6.215806e-04	ci right 6.680325e-04	k: 2984	n:4630000
KS ci ratio: 2.141647e-01	ci left: 6.460860e-05	ci right 8.030438e-05	k: 334	n:4630000
PIK3CA   4630000 perm   9115 sec   (508 perm/sec)   p_kst 7.213823e-05   p_cons 6.444924e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.950168e-07	k: 0	n:4640000
Cons ci ratio: 7.161763e-02	ci left: 6.221458e-04	ci right 6.685672e-04	k: 2993	n:4640000
KS ci ratio: 2.141647e-01	ci left: 6.446935e-05	ci right 8.013131e-05	k: 334	n:4640000
PIK3CA   4640000 perm   9152 sec   (507 perm/sec)   p_kst 7.198276e-05   p_cons 6.450431e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.933071e-07	k: 0	n:4650000
Cons ci ratio: 7.156986e-02	ci left: 6.216527e-04	ci right 6.680050e-04	k: 2997	n:4650000
KS ci ratio: 2.141647e-01	ci left: 6.433071e-05	ci right 7.995898e-05	k: 334	n:4650000
PIK3CA   4650000 perm   9188 sec   (506 perm/sec)   p_kst 7.182796e-05   p_cons 6.445161e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.916047e-07	k: 0	n:4660000
Cons ci ratio: 7.149835e-02	ci left: 6.215832e-04	ci right 6.678821e-04	k: 3003	n:4660000
KS ci ratio: 2.141648e-01	ci left: 6.419266e-05	ci right 7.978740e-05	k: 334	n:4660000
PIK3CA   4660000 perm   9225 sec   (505 perm/sec)   p_kst 7.167382e-05   p_cons 6.444206e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.899096e-07	k: 0	n:4670000
Cons ci ratio: 7.141519e-02	ci left: 6.217243e-04	ci right 6.679777e-04	k: 3010	n:4670000
KS ci ratio: 2.138458e-01	ci left: 6.425786e-05	ci right 7.984214e-05	k: 335	n:4670000
PIK3CA   4670000 perm   9262 sec   (504 perm/sec)   p_kst 7.173448e-05   p_cons 6.445396e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.882218e-07	k: 0	n:4680000
Cons ci ratio: 7.137966e-02	ci left: 6.210254e-04	ci right 6.672028e-04	k: 3013	n:4680000
KS ci ratio: 2.138458e-01	ci left: 6.412055e-05	ci right 7.967154e-05	k: 335	n:4680000
PIK3CA   4680000 perm   9299 sec   (503 perm/sec)   p_kst 7.158120e-05   p_cons 6.438034e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.865412e-07	k: 0	n:4690000
Cons ci ratio: 7.130873e-02	ci left: 6.209578e-04	ci right 6.670824e-04	k: 3019	n:4690000
KS ci ratio: 2.138458e-01	ci left: 6.398384e-05	ci right 7.950166e-05	k: 335	n:4690000
PIK3CA   4690000 perm   9336 sec   (502 perm/sec)   p_kst 7.142857e-05   p_cons 6.437100e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.848677e-07	k: 0	n:4700000
Cons ci ratio: 7.129696e-02	ci left: 6.198456e-04	ci right 6.658796e-04	k: 3020	n:4700000
KS ci ratio: 2.132122e-01	ci left: 6.425048e-05	ci right 7.978076e-05	k: 337	n:4700000
PIK3CA   4700000 perm   9374 sec   (501 perm/sec)   p_kst 7.170213e-05   p_cons 6.425532e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.832013e-07	k: 0	n:4710000
Cons ci ratio: 7.124983e-02	ci left: 6.193637e-04	ci right 6.653303e-04	k: 3024	n:4710000
KS ci ratio: 2.132122e-01	ci left: 6.411407e-05	ci right 7.961138e-05	k: 337	n:4710000
PIK3CA   4710000 perm   9411 sec   (500 perm/sec)   p_kst 7.154989e-05   p_cons 6.420382e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.815419e-07	k: 0	n:4720000
Cons ci ratio: 7.116753e-02	ci left: 6.195081e-04	ci right 6.654301e-04	k: 3031	n:4720000
KS ci ratio: 2.125842e-01	ci left: 6.437937e-05	ci right 7.988900e-05	k: 339	n:4720000
PIK3CA   4720000 perm   9449 sec   (500 perm/sec)   p_kst 7.182203e-05   p_cons 6.421610e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.798896e-07	k: 0	n:4730000
Cons ci ratio: 7.103875e-02	ci left: 6.204826e-04	ci right 6.663902e-04	k: 3042	n:4730000
KS ci ratio: 2.125842e-01	ci left: 6.424326e-05	ci right 7.972010e-05	k: 339	n:4730000
PIK3CA   4730000 perm   9486 sec   (499 perm/sec)   p_kst 7.167019e-05   p_cons 6.431290e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.782443e-07	k: 0	n:4740000
Cons ci ratio: 7.095718e-02	ci left: 6.206241e-04	ci right 6.664873e-04	k: 3049	n:4740000
KS ci ratio: 2.125842e-01	ci left: 6.410772e-05	ci right 7.955191e-05	k: 339	n:4740000
PIK3CA   4740000 perm   9524 sec   (498 perm/sec)   p_kst 7.151899e-05   p_cons 6.432489e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.766059e-07	k: 0	n:4750000
Cons ci ratio: 7.084111e-02	ci left: 6.213855e-04	ci right 6.672267e-04	k: 3059	n:4750000
KS ci ratio: 2.122723e-01	ci left: 6.417209e-05	ci right 7.960614e-05	k: 340	n:4750000
PIK3CA   4750000 perm   9561 sec   (497 perm/sec)   p_kst 7.157895e-05   p_cons 6.440000e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.749744e-07	k: 0	n:4760000
Cons ci ratio: 7.076022e-02	ci left: 6.215246e-04	ci right 6.673216e-04	k: 3066	n:4760000
KS ci ratio: 2.122723e-01	ci left: 6.403727e-05	ci right 7.943891e-05	k: 340	n:4760000
PIK3CA   4760000 perm   9599 sec   (496 perm/sec)   p_kst 7.142857e-05   p_cons 6.441176e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.733497e-07	k: 0	n:4770000
Cons ci ratio: 7.072566e-02	ci left: 6.208394e-04	ci right 6.665627e-04	k: 3069	n:4770000
KS ci ratio: 2.116525e-01	ci left: 6.430005e-05	ci right 7.971388e-05	k: 342	n:4770000
PIK3CA   4770000 perm   9636 sec   (495 perm/sec)   p_kst 7.169811e-05   p_cons 6.433962e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.717318e-07	k: 0	n:4780000
Cons ci ratio: 7.064517e-02	ci left: 6.209792e-04	ci right 6.666585e-04	k: 3076	n:4780000
KS ci ratio: 2.116525e-01	ci left: 6.416554e-05	ci right 7.954711e-05	k: 342	n:4780000
PIK3CA   4780000 perm   9675 sec   (494 perm/sec)   p_kst 7.154812e-05   p_cons 6.435146e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.701207e-07	k: 0	n:4790000
Cons ci ratio: 7.051919e-02	ci left: 6.219387e-04	ci right 6.676037e-04	k: 3087	n:4790000
KS ci ratio: 2.113446e-01	ci left: 6.422929e-05	ci right 7.960085e-05	k: 343	n:4790000
PIK3CA   4790000 perm   9714 sec   (493 perm/sec)   p_kst 7.160752e-05   p_cons 6.444676e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.685163e-07	k: 0	n:4800000
Cons ci ratio: 7.047358e-02	ci left: 6.214616e-04	ci right 6.670609e-04	k: 3091	n:4800000
KS ci ratio: 2.113446e-01	ci left: 6.409548e-05	ci right 7.943502e-05	k: 343	n:4800000
PIK3CA   4800000 perm   9752 sec   (492 perm/sec)   p_kst 7.145833e-05   p_cons 6.439583e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.669185e-07	k: 0	n:4810000
Cons ci ratio: 7.039394e-02	ci left: 6.215993e-04	ci right 6.671550e-04	k: 3098	n:4810000
KS ci ratio: 2.110381e-01	ci left: 6.415913e-05	ci right 7.948875e-05	k: 344	n:4810000
PIK3CA   4810000 perm   9790 sec   (491 perm/sec)   p_kst 7.151767e-05   p_cons 6.440748e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.653274e-07	k: 0	n:4820000
Cons ci ratio: 7.032590e-02	ci left: 6.215326e-04	ci right 6.670376e-04	k: 3104	n:4820000
KS ci ratio: 2.107329e-01	ci left: 6.422253e-05	ci right 7.954225e-05	k: 345	n:4820000
PIK3CA   4820000 perm   9828 sec   (490 perm/sec)   p_kst 7.157676e-05   p_cons 6.439834e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.637429e-07	k: 0	n:4830000
Cons ci ratio: 7.023547e-02	ci left: 6.218730e-04	ci right 6.673420e-04	k: 3112	n:4830000
KS ci ratio: 2.101265e-01	ci left: 6.448182e-05	ci right 7.981343e-05	k: 347	n:4830000
PIK3CA   4830000 perm   9866 sec   (490 perm/sec)   p_kst 7.184265e-05   p_cons 6.443064e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.621649e-07	k: 0	n:4840000
Cons ci ratio: 7.019040e-02	ci left: 6.214000e-04	ci right 6.668041e-04	k: 3116	n:4840000
KS ci ratio: 2.101265e-01	ci left: 6.434860e-05	ci right 7.964853e-05	k: 347	n:4840000
PIK3CA   4840000 perm   9903 sec   (489 perm/sec)   p_kst 7.169421e-05   p_cons 6.438017e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.605934e-07	k: 0	n:4850000
Cons ci ratio: 7.011172e-02	ci left: 6.215368e-04	ci right 6.668979e-04	k: 3123	n:4850000
KS ci ratio: 2.095252e-01	ci left: 6.460662e-05	ci right 7.991831e-05	k: 349	n:4850000
PIK3CA   4850000 perm   9941 sec   (488 perm/sec)   p_kst 7.195876e-05   p_cons 6.439175e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.590284e-07	k: 0	n:4860000
Cons ci ratio: 7.006689e-02	ci left: 6.210665e-04	ci right 6.663631e-04	k: 3127	n:4860000
KS ci ratio: 2.095252e-01	ci left: 6.447369e-05	ci right 7.975387e-05	k: 349	n:4860000
PIK3CA   4860000 perm   9979 sec   (487 perm/sec)   p_kst 7.181070e-05   p_cons 6.434156e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.574698e-07	k: 0	n:4870000
Cons ci ratio: 6.998862e-02	ci left: 6.212034e-04	ci right 6.664574e-04	k: 3134	n:4870000
KS ci ratio: 2.092266e-01	ci left: 6.453587e-05	ci right 7.980619e-05	k: 350	n:4870000
PIK3CA   4870000 perm   10017 sec   (486 perm/sec)   p_kst 7.186858e-05   p_cons 6.435318e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.559176e-07	k: 0	n:4880000
Cons ci ratio: 6.993288e-02	ci left: 6.209371e-04	ci right 6.661342e-04	k: 3139	n:4880000
KS ci ratio: 2.089291e-01	ci left: 6.459782e-05	ci right 7.985829e-05	k: 351	n:4880000
PIK3CA   4880000 perm   10056 sec   (485 perm/sec)   p_kst 7.192623e-05   p_cons 6.432377e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.543718e-07	k: 0	n:4890000
Cons ci ratio: 6.983286e-02	ci left: 6.214757e-04	ci right 6.666446e-04	k: 3148	n:4890000
KS ci ratio: 2.089292e-01	ci left: 6.446571e-05	ci right 7.969498e-05	k: 351	n:4890000
PIK3CA   4890000 perm   10094 sec   (484 perm/sec)   p_kst 7.177914e-05   p_cons 6.437628e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.528323e-07	k: 0	n:4900000
Cons ci ratio: 6.975537e-02	ci left: 6.216110e-04	ci right 6.667376e-04	k: 3155	n:4900000
KS ci ratio: 2.089292e-01	ci left: 6.433415e-05	ci right 7.953234e-05	k: 351	n:4900000
PIK3CA   4900000 perm   10133 sec   (484 perm/sec)   p_kst 7.163265e-05   p_cons 6.438776e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.512990e-07	k: 0	n:4910000
Cons ci ratio: 6.966711e-02	ci left: 6.219459e-04	ci right 6.670374e-04	k: 3163	n:4910000
KS ci ratio: 2.089292e-01	ci left: 6.420312e-05	ci right 7.937036e-05	k: 351	n:4910000
PIK3CA   4910000 perm   10172 sec   (483 perm/sec)   p_kst 7.148676e-05   p_cons 6.441955e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.497720e-07	k: 0	n:4920000
Cons ci ratio: 6.959017e-02	ci left: 6.220798e-04	ci right 6.671291e-04	k: 3170	n:4920000
KS ci ratio: 2.089292e-01	ci left: 6.407263e-05	ci right 7.920903e-05	k: 351	n:4920000
PIK3CA   4920000 perm   10212 sec   (482 perm/sec)   p_kst 7.134146e-05   p_cons 6.443089e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.482511e-07	k: 0	n:4930000
Cons ci ratio: 6.948068e-02	ci left: 6.228111e-04	ci right 6.678396e-04	k: 3180	n:4930000
KS ci ratio: 2.089292e-01	ci left: 6.394266e-05	ci right 7.904837e-05	k: 351	n:4930000
PIK3CA   4930000 perm   10251 sec   (481 perm/sec)   p_kst 7.119675e-05   p_cons 6.450304e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.467365e-07	k: 0	n:4940000
Cons ci ratio: 6.941524e-02	ci left: 6.227438e-04	ci right 6.677234e-04	k: 3186	n:4940000
KS ci ratio: 2.086331e-01	ci left: 6.400507e-05	ci right 7.910135e-05	k: 352	n:4940000
PIK3CA   4940000 perm   10290 sec   (480 perm/sec)   p_kst 7.125506e-05   p_cons 6.449393e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.452279e-07	k: 0	n:4950000
Cons ci ratio: 6.935000e-02	ci left: 6.226769e-04	ci right 6.676076e-04	k: 3192	n:4950000
KS ci ratio: 2.083382e-01	ci left: 6.406724e-05	ci right 7.915410e-05	k: 353	n:4950000
PIK3CA   4950000 perm   10329 sec   (479 perm/sec)   p_kst 7.131313e-05   p_cons 6.448485e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.437254e-07	k: 0	n:4960000
Cons ci ratio: 6.929577e-02	ci left: 6.224120e-04	ci right 6.672871e-04	k: 3197	n:4960000
KS ci ratio: 2.077521e-01	ci left: 6.432029e-05	ci right 7.941872e-05	k: 355	n:4960000
PIK3CA   4960000 perm   10369 sec   (478 perm/sec)   p_kst 7.157258e-05   p_cons 6.445565e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.422290e-07	k: 0	n:4970000
Cons ci ratio: 6.926332e-02	ci left: 6.217529e-04	ci right 6.665586e-04	k: 3200	n:4970000
KS ci ratio: 2.077521e-01	ci left: 6.419088e-05	ci right 7.925892e-05	k: 355	n:4970000
PIK3CA   4970000 perm   10409 sec   (477 perm/sec)   p_kst 7.142857e-05   p_cons 6.438632e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.407386e-07	k: 0	n:4980000
Cons ci ratio: 6.922010e-02	ci left: 6.212937e-04	ci right 6.660372e-04	k: 3204	n:4980000
KS ci ratio: 2.077521e-01	ci left: 6.406198e-05	ci right 7.909977e-05	k: 355	n:4980000
PIK3CA   4980000 perm   10447 sec   (477 perm/sec)   p_kst 7.128514e-05   p_cons 6.433735e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.392541e-07	k: 0	n:4990000
Cons ci ratio: 6.916618e-02	ci left: 6.210333e-04	ci right 6.657218e-04	k: 3209	n:4990000
KS ci ratio: 2.077522e-01	ci left: 6.393360e-05	ci right 7.894125e-05	k: 355	n:4990000
PIK3CA   4990000 perm   10487 sec   (476 perm/sec)   p_kst 7.114228e-05   p_cons 6.430862e-04   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.377756e-07	k: 0	n:5000000
Cons ci ratio: 6.404061e-02	ci left: 7.248164e-04	ci right 7.729648e-04	k: 3743	n:5000000
KS ci ratio: 2.077522e-01	ci left: 6.380573e-05	ci right 7.878337e-05	k: 355	n:5000000
PIK3CA   5000000 perm   10526 sec   (475 perm/sec)   p_kst 7.100000e-05   p_cons 7.486000e-04   p_joint 0

Outputting figure to mutsig2_images.part000000000131/PIK3CA.29_3287_5000000_7.1e-05_0.0007486_0.png
                gene_name: PIK3CA
               theta_stop: 3.9 
                    nperm: 5000000 
                     p_ks: 7.10e-05 
        ci_ks_bounds_left: 6.38e-05 
       ci_ks_bounds_right: 7.88e-05 
                   p_cons: 0.00075 
      ci_cons_bounds_left: 0.00072 
     ci_cons_bounds_right: 0.00077 
                  p_joint: 0 
     ci_joint_bounds_left: 0 
    ci_joint_bounds_right: 7.38e-07 

Current progress: 6 percent done.
PIK3CG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.531683e-02	ci left: 3.249540e-01	ci right 3.435426e-01	k: 3342	n:10000
Cons ci ratio: 1.456751e-02	ci left: 8.721407e-01	ci right 8.850379e-01	k: 8787	n:10000
KS ci ratio: 6.716099e-02	ci left: 2.454909e-01	ci right 2.626525e-01	k: 2540	n:10000
PIK3CG   10000 perm   2 sec   (4583 perm/sec)   p_kst 2.540000e-01   p_cons 8.787000e-01   p_joint 3.342000e-01

Outputting figure to mutsig2_images.part000000000131/PIK3CG.17_3349_10000_0.254_0.8787_0.3342.png
                gene_name: PIK3CG
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 8 percent done.
PIKFYVE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.999762e-01	ci left: 3.329057e-02	ci right 4.078224e-02	k: 369	n:10000
Cons ci ratio: 2.515839e-01	ci left: 2.071417e-02	ci right 2.676765e-02	k: 236	n:10000
KS ci ratio: 7.519138e-02	ci left: 2.056014e-01	ci right 2.217657e-01	k: 2136	n:10000
PIKFYVE   10000 perm   3 sec   (3954 perm/sec)   p_kst 2.136000e-01   p_cons 2.360000e-02   p_joint 3.690000e-02

Joint ci ratio: 1.671903e-01	ci left: 2.450986e-02	ci right 2.902913e-02	k: 534	n:20000
Cons ci ratio: 1.876616e-01	ci left: 1.934382e-02	ci right 2.339700e-02	k: 426	n:20000
KS ci ratio: 5.389942e-02	ci left: 2.034816e-01	ci right 2.148031e-01	k: 4182	n:20000
PIKFYVE   20000 perm   5 sec   (3648 perm/sec)   p_kst 2.091000e-01   p_cons 2.130000e-02   p_joint 2.670000e-02

Joint ci ratio: 1.392546e-01	ci left: 2.393877e-02	ci right 2.755387e-02	k: 771	n:30000
Cons ci ratio: 1.551556e-01	ci left: 1.921493e-02	ci right 2.247879e-02	k: 624	n:30000
KS ci ratio: 4.320253e-02	ci left: 2.106599e-01	ci right 2.199953e-01	k: 6459	n:30000
PIKFYVE   30000 perm   9 sec   (3528 perm/sec)   p_kst 2.153000e-01   p_cons 2.080000e-02   p_joint 2.570000e-02

Joint ci ratio: 1.206787e-01	ci left: 2.414703e-02	ci right 2.727234e-02	k: 1027	n:40000
Cons ci ratio: 1.430569e-01	ci left: 1.710552e-02	ci right 1.976504e-02	k: 736	n:40000
KS ci ratio: 3.748204e-02	ci left: 2.106844e-01	ci right 2.187571e-01	k: 8588	n:40000
PIKFYVE   40000 perm   12 sec   (3450 perm/sec)   p_kst 2.147000e-01   p_cons 1.840000e-02   p_joint 2.567500e-02

Joint ci ratio: 8.524039e-02	ci left: 3.884762e-02	ci right 4.232598e-02	k: 2028	n:50000
Cons ci ratio: 1.208769e-01	ci left: 1.935346e-02	ci right 2.186263e-02	k: 1029	n:50000
KS ci ratio: 3.361322e-02	ci left: 2.102329e-01	ci right 2.174403e-01	k: 10691	n:50000
PIKFYVE   50000 perm   15 sec   (3386 perm/sec)   p_kst 2.138200e-01   p_cons 2.058000e-02   p_joint 4.056000e-02

Joint ci ratio: 8.055656e-02	ci left: 3.643516e-02	ci right 3.950974e-02	k: 2277	n:60000
Cons ci ratio: 1.112679e-01	ci left: 1.913787e-02	ci right 2.140887e-02	k: 1215	n:60000
KS ci ratio: 3.073697e-02	ci left: 2.099781e-01	ci right 2.165496e-01	k: 12795	n:60000
PIKFYVE   60000 perm   18 sec   (3331 perm/sec)   p_kst 2.132500e-01   p_cons 2.025000e-02   p_joint 3.795000e-02

Joint ci ratio: 8.031089e-02	ci left: 3.159085e-02	ci right 3.424805e-02	k: 2303	n:70000
Cons ci ratio: 1.034491e-01	ci left: 1.905921e-02	ci right 2.115226e-02	k: 1406	n:70000
KS ci ratio: 2.836357e-02	ci left: 2.113218e-01	ci right 2.174161e-01	k: 15005	n:70000
PIKFYVE   70000 perm   21 sec   (3281 perm/sec)   p_kst 2.143571e-01   p_cons 2.008571e-02   p_joint 3.290000e-02

Joint ci ratio: 7.581363e-02	ci left: 3.111017e-02	ci right 3.357390e-02	k: 2586	n:80000
Cons ci ratio: 9.716951e-02	ci left: 1.896784e-02	ci right 2.091719e-02	k: 1594	n:80000
KS ci ratio: 2.677903e-02	ci left: 2.084257e-01	ci right 2.140953e-01	k: 16900	n:80000
PIKFYVE   80000 perm   25 sec   (3231 perm/sec)   p_kst 2.112500e-01   p_cons 1.992500e-02   p_joint 3.232500e-02

Outputting figure to mutsig2_images.part000000000131/PIKFYVE.13_6472_80000_0.21125_0.019925_0.032325.png
                gene_name: PIKFYVE
               theta_stop: 0.097 
                    nperm: 80000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.020 
      ci_cons_bounds_left: 0.019 
     ci_cons_bounds_right: 0.021 
                  p_joint: 0.032 
     ci_joint_bounds_left: 0.031 
    ci_joint_bounds_right: 0.034 

Current progress: 10 percent done.
PKD1
Processing conservation and coverage...
76% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.086194e-01	ci left: 3.053425e-02	ci right 3.774046e-02	k: 340	n:10000
Cons ci ratio: 6.950796e-02	ci left: 2.328414e-01	ci right 2.497096e-01	k: 2412	n:10000
KS ci ratio: 2.743868e-01	ci left: 1.725330e-02	ci right 2.283124e-02	k: 199	n:10000
PKD1   10000 perm   3 sec   (3189 perm/sec)   p_kst 1.990000e-02   p_cons 2.412000e-01   p_joint 3.400000e-02

Joint ci ratio: 1.453278e-01	ci left: 3.254402e-02	ci right 3.769229e-02	k: 701	n:20000
Cons ci ratio: 4.973419e-02	ci left: 2.310705e-01	ci right 2.429060e-01	k: 4739	n:20000
KS ci ratio: 1.887942e-01	ci left: 1.910538e-02	ci right 2.313553e-02	k: 421	n:20000
PKD1   20000 perm   7 sec   (2943 perm/sec)   p_kst 2.105000e-02   p_cons 2.369500e-01   p_joint 3.505000e-02

Joint ci ratio: 1.308797e-01	ci left: 2.713018e-02	ci right 3.096175e-02	k: 870	n:30000
Cons ci ratio: 3.815501e-02	ci left: 2.552751e-01	ci right 2.652380e-01	k: 7807	n:30000
KS ci ratio: 1.510126e-01	ci left: 2.030570e-02	ci right 2.365443e-02	k: 658	n:30000
PKD1   30000 perm   11 sec   (2848 perm/sec)   p_kst 2.193333e-02   p_cons 2.602333e-01   p_joint 2.900000e-02

Joint ci ratio: 1.181661e-01	ci left: 2.519071e-02	ci right 2.837849e-02	k: 1070	n:40000
Cons ci ratio: 3.311563e-02	ci left: 2.551098e-01	ci right 2.637252e-01	k: 10376	n:40000
KS ci ratio: 1.338236e-01	ci left: 1.959304e-02	ci right 2.242710e-02	k: 839	n:40000
PKD1   40000 perm   14 sec   (2787 perm/sec)   p_kst 2.097500e-02   p_cons 2.594000e-01   p_joint 2.675000e-02

Joint ci ratio: 9.552763e-02	ci left: 3.102152e-02	ci right 3.415306e-02	k: 1628	n:50000
Cons ci ratio: 3.116708e-02	ci left: 2.365800e-01	ci right 2.440902e-01	k: 12016	n:50000
KS ci ratio: 1.203412e-01	ci left: 1.952814e-02	ci right 2.204793e-02	k: 1038	n:50000
PKD1   50000 perm   18 sec   (2741 perm/sec)   p_kst 2.076000e-02   p_cons 2.403200e-01   p_joint 3.256000e-02

Joint ci ratio: 1.063301e-01	ci left: 2.097100e-02	ci right 2.334220e-02	k: 1328	n:60000
Cons ci ratio: 2.741752e-02	ci left: 2.506201e-01	ci right 2.576037e-01	k: 15246	n:60000
KS ci ratio: 1.101180e-01	ci left: 1.954322e-02	ci right 2.183680e-02	k: 1240	n:60000
PKD1   60000 perm   22 sec   (2703 perm/sec)   p_kst 2.066667e-02   p_cons 2.541000e-01   p_joint 2.213333e-02

Joint ci ratio: 7.937172e-02	ci left: 3.233337e-02	ci right 3.501975e-02	k: 2356	n:70000
Cons ci ratio: 2.535138e-02	ci left: 2.513617e-01	ci right 2.578301e-01	k: 17821	n:70000
KS ci ratio: 1.014085e-01	ci left: 1.983911e-02	ci right 2.197229e-02	k: 1462	n:70000
PKD1   70000 perm   26 sec   (2672 perm/sec)   p_kst 2.088571e-02   p_cons 2.545857e-01   p_joint 3.365714e-02

Joint ci ratio: 7.352426e-02	ci left: 3.304950e-02	ci right 3.558442e-02	k: 2744	n:80000
Cons ci ratio: 2.376570e-02	ci left: 2.507497e-01	ci right 2.567931e-01	k: 20301	n:80000
KS ci ratio: 9.485907e-02	ci left: 1.990768e-02	ci right 2.190228e-02	k: 1671	n:80000
PKD1   80000 perm   30 sec   (2645 perm/sec)   p_kst 2.088750e-02   p_cons 2.537625e-01   p_joint 3.430000e-02

Outputting figure to mutsig2_images.part000000000131/PKD1.10_13096_80000_0.020887_0.25376_0.0343.png
                gene_name: PKD1
               theta_stop: 0.095 
                    nperm: 80000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.022 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.034 
     ci_joint_bounds_left: 0.033 
    ci_joint_bounds_right: 0.036 

Current progress: 12 percent done.
PIK3C2G
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.328380e-01	ci left: 7.475563e-02	ci right 8.549047e-02	k: 800	n:10000
Cons ci ratio: 9.731480e-02	ci left: 1.327651e-01	ci right 1.464456e-01	k: 1395	n:10000
KS ci ratio: 1.795348e-01	ci left: 4.140268e-02	ci right 4.966468e-02	k: 454	n:10000
PIK3C2G   10000 perm   2 sec   (4715 perm/sec)   p_kst 4.540000e-02   p_cons 1.395000e-01   p_joint 8.000000e-02

Joint ci ratio: 1.129508e-01	ci left: 5.358313e-02	ci right 6.004647e-02	k: 1135	n:20000
Cons ci ratio: 6.651798e-02	ci left: 1.430065e-01	ci right 1.528961e-01	k: 2958	n:20000
KS ci ratio: 1.293542e-01	ci left: 4.105370e-02	ci right 4.677985e-02	k: 877	n:20000
PIK3C2G   20000 perm   5 sec   (4276 perm/sec)   p_kst 4.385000e-02   p_cons 1.479000e-01   p_joint 5.675000e-02

Joint ci ratio: 9.803211e-02	ci left: 4.811419e-02	ci right 5.310663e-02	k: 1517	n:30000
Cons ci ratio: 5.392402e-02	ci left: 1.457131e-01	ci right 1.538215e-01	k: 4492	n:30000
KS ci ratio: 1.065523e-01	ci left: 4.086211e-02	ci right 4.549355e-02	k: 1294	n:30000
PIK3C2G   30000 perm   7 sec   (4108 perm/sec)   p_kst 4.313333e-02   p_cons 1.497333e-01   p_joint 5.056667e-02

Joint ci ratio: 7.150908e-02	ci left: 6.737087e-02	ci right 7.239178e-02	k: 2794	n:40000
Cons ci ratio: 4.596062e-02	ci left: 1.503269e-01	ci right 1.574234e-01	k: 6154	n:40000
KS ci ratio: 9.187949e-02	ci left: 4.152174e-02	ci right 4.554487e-02	k: 1740	n:40000
PIK3C2G   40000 perm   10 sec   (4003 perm/sec)   p_kst 4.350000e-02   p_cons 1.538500e-01   p_joint 6.985000e-02

Outputting figure to mutsig2_images.part000000000131/PIK3C2G.8_4462_40000_0.0435_0.15385_0.06985.png
                gene_name: PIK3C2G
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.043 
        ci_ks_bounds_left: 0.042 
       ci_ks_bounds_right: 0.046 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.070 
     ci_joint_bounds_left: 0.067 
    ci_joint_bounds_right: 0.072 

Current progress: 14 percent done.
PIWIL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.993563e-02	ci left: 2.905320e-01	ci right 3.085849e-01	k: 2995	n:10000
Cons ci ratio: 1.026480e-02	ci left: 9.309212e-01	ci right 9.406231e-01	k: 9359	n:10000
KS ci ratio: 7.820259e-02	ci left: 1.928879e-01	ci right 2.086868e-01	k: 2007	n:10000
PIWIL1   10000 perm   2 sec   (5055 perm/sec)   p_kst 2.007000e-01   p_cons 9.359000e-01   p_joint 2.995000e-01

Outputting figure to mutsig2_images.part000000000131/PIWIL1.8_2666_10000_0.2007_0.9359_0.2995.png
                gene_name: PIWIL1
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 16 percent done.
PKD1L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.114346e-02	ci left: 6.033719e-01	ci right 6.225622e-01	k: 6130	n:10000
KS ci ratio: 1.702727e-02	ci left: 8.339892e-01	ci right 8.484115e-01	k: 8413	n:10000
PKD1L1   10000 perm   3 sec   (3941 perm/sec)   p_kst 8.413000e-01   p_cons 6.130000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000131/PKD1L1.8_8778_10000_0.8413_0.613_1.png
                gene_name: PKD1L1
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 18 percent done.
PIK3AP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.544741e-02	ci left: 6.944402e-01	ci right 7.124411e-01	k: 7035	n:10000
KS ci ratio: 2.381504e-02	ci left: 7.215864e-01	ci right 7.390793e-01	k: 7304	n:10000
PIK3AP1   10000 perm   2 sec   (5494 perm/sec)   p_kst 7.304000e-01   p_cons 7.035000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000131/PIK3AP1.7_2486_10000_0.7304_0.7035_1.png
                gene_name: PIK3AP1
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 20 percent done.
PIK3R4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.533935e-02	ci left: 1.376631e-01	ci right 1.515446e-01	k: 1445	n:10000
Cons ci ratio: 1.120139e-01	ci left: 1.029565e-01	ci right 1.152723e-01	k: 1090	n:10000
KS ci ratio: 6.003574e-02	ci left: 2.898383e-01	ci right 3.078790e-01	k: 2988	n:10000
PIK3R4   10000 perm   2 sec   (4735 perm/sec)   p_kst 2.988000e-01   p_cons 1.090000e-01   p_joint 1.445000e-01

Joint ci ratio: 3.630564e-02	ci left: 3.615101e-01	ci right 3.749282e-01	k: 7364	n:20000
Cons ci ratio: 7.974153e-02	ci left: 1.034850e-01	ci right 1.121294e-01	k: 2155	n:20000
KS ci ratio: 4.233061e-02	ci left: 2.937031e-01	ci right 3.064550e-01	k: 6001	n:20000
PIK3R4   20000 perm   5 sec   (4369 perm/sec)   p_kst 3.000500e-01   p_cons 1.077500e-01   p_joint 3.682000e-01

Outputting figure to mutsig2_images.part000000000131/PIK3R4.7_4153_20000_0.30005_0.10775_0.3682.png
                gene_name: PIK3R4
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 22 percent done.
PKD1L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.939234e-02	ci left: 7.954727e-01	ci right 8.111502e-01	k: 8034	n:10000
Cons ci ratio: 7.125468e-03	ci left: 9.644665e-01	ci right 9.714574e-01	k: 9681	n:10000
KS ci ratio: 3.033536e-02	ci left: 6.158280e-01	ci right 6.348989e-01	k: 6254	n:10000
PKD1L2   10000 perm   2 sec   (4007 perm/sec)   p_kst 6.254000e-01   p_cons 9.681000e-01   p_joint 8.034000e-01

Outputting figure to mutsig2_images.part000000000131/PKD1L2.7_7621_10000_0.6254_0.9681_0.8034.png
                gene_name: PKD1L2
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 24 percent done.
PKDREJ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.498298e-02	ci left: 3.276348e-01	ci right 3.462602e-01	k: 3369	n:10000
Cons ci ratio: 2.457788e-02	ci left: 7.088662e-01	ci right 7.266068e-01	k: 7178	n:10000
KS ci ratio: 7.577795e-02	ci left: 2.030380e-01	ci right 2.191306e-01	k: 2110	n:10000
PKDREJ   10000 perm   2 sec   (4369 perm/sec)   p_kst 2.110000e-01   p_cons 7.178000e-01   p_joint 3.369000e-01

Outputting figure to mutsig2_images.part000000000131/PKDREJ.7_6766_10000_0.211_0.7178_0.3369.png
                gene_name: PKDREJ
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 25 percent done.
PIK3C2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.805179e-02	ci left: 6.519282e-01	ci right 6.705778e-01	k: 6613	n:10000
Cons ci ratio: 7.350978e-02	ci left: 2.131958e-01	ci right 2.295668e-01	k: 2213	n:10000
KS ci ratio: 1.477842e-02	ci left: 8.689718e-01	ci right 8.820086e-01	k: 8756	n:10000
PIK3C2A   10000 perm   2 sec   (4594 perm/sec)   p_kst 8.756000e-01   p_cons 2.213000e-01   p_joint 6.613000e-01

Outputting figure to mutsig2_images.part000000000131/PIK3C2A.6_5189_10000_0.8756_0.2213_0.6613.png
                gene_name: PIK3C2A
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 27 percent done.
PIK3C2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.894895e-03	ci left: 9.571236e-01	ci right 9.648049e-01	k: 9611	n:10000
KS ci ratio: 1.176713e-02	ci left: 9.118323e-01	ci right 9.227232e-01	k: 9174	n:10000
PIK3C2B   10000 perm   2 sec   (4600 perm/sec)   p_kst 9.174000e-01   p_cons 9.611000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000131/PIK3C2B.6_5033_10000_0.9174_0.9611_1.png
                gene_name: PIK3C2B
               theta_stop: 0.012 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 29 percent done.
PKD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.002490e-01	ci left: 7.602648e-03	ci right 1.149110e-02	k: 94	n:10000
Cons ci ratio: 1.940616e-01	ci left: 3.538572e-02	ci right 4.308567e-02	k: 391	n:10000
KS ci ratio: 2.638133e-01	ci left: 1.874721e-02	ci right 2.453613e-02	k: 215	n:10000
PKD2   10000 perm   2 sec   (5400 perm/sec)   p_kst 2.150000e-02   p_cons 3.910000e-02   p_joint 9.400000e-03

Joint ci ratio: 2.198255e-01	ci left: 1.392826e-02	ci right 1.741462e-02	k: 312	n:20000
Cons ci ratio: 1.354374e-01	ci left: 3.747135e-02	ci right 4.296335e-02	k: 803	n:20000
KS ci ratio: 1.911204e-01	ci left: 1.862872e-02	ci right 2.261236e-02	k: 411	n:20000
PKD2   20000 perm   4 sec   (4861 perm/sec)   p_kst 2.055000e-02   p_cons 4.015000e-02   p_joint 1.560000e-02

Joint ci ratio: 2.159224e-01	ci left: 9.692830e-03	ci right 1.206999e-02	k: 325	n:30000
Cons ci ratio: 1.140274e-01	ci left: 3.573495e-02	ci right 4.008846e-02	k: 1136	n:30000
KS ci ratio: 1.626208e-01	ci left: 1.745315e-02	ci right 2.057432e-02	k: 569	n:30000
PKD2   30000 perm   6 sec   (4662 perm/sec)   p_kst 1.896667e-02   p_cons 3.786667e-02   p_joint 1.083333e-02

Joint ci ratio: 1.604635e-01	ci left: 1.351942e-02	ci right 1.590179e-02	k: 587	n:40000
Cons ci ratio: 9.735771e-02	ci left: 3.705059e-02	ci right 4.086671e-02	k: 1557	n:40000
KS ci ratio: 1.385295e-01	ci left: 1.826400e-02	ci right 2.100637e-02	k: 784	n:40000
PKD2   40000 perm   9 sec   (4532 perm/sec)   p_kst 1.960000e-02   p_cons 3.892500e-02   p_joint 1.467500e-02

Joint ci ratio: 1.598797e-01	ci left: 1.092953e-02	ci right 1.284776e-02	k: 593	n:50000
Cons ci ratio: 8.725455e-02	ci left: 3.710452e-02	ci right 4.050929e-02	k: 1939	n:50000
KS ci ratio: 1.236000e-01	ci left: 1.849986e-02	ci right 2.095634e-02	k: 985	n:50000
PKD2   50000 perm   11 sec   (4384 perm/sec)   p_kst 1.970000e-02   p_cons 3.878000e-02   p_joint 1.186000e-02

Joint ci ratio: 1.114082e-01	ci left: 1.908923e-02	ci right 2.135751e-02	k: 1212	n:60000
Cons ci ratio: 7.936894e-02	ci left: 3.751399e-02	ci right 4.063080e-02	k: 2343	n:60000
KS ci ratio: 1.125983e-01	ci left: 1.868402e-02	ci right 2.092943e-02	k: 1187	n:60000
PKD2   60000 perm   14 sec   (4199 perm/sec)   p_kst 1.978333e-02   p_cons 3.905000e-02   p_joint 2.020000e-02

Joint ci ratio: 1.268573e-01	ci left: 1.260282e-02	ci right 1.432358e-02	k: 941	n:70000
Cons ci ratio: 7.349076e-02	ci left: 3.761995e-02	ci right 4.050414e-02	k: 2733	n:70000
KS ci ratio: 1.043997e-01	ci left: 1.871118e-02	ci right 2.078605e-02	k: 1381	n:70000
PKD2   70000 perm   17 sec   (4148 perm/sec)   p_kst 1.972857e-02   p_cons 3.904286e-02   p_joint 1.344286e-02

Joint ci ratio: 9.982007e-02	ci left: 1.796762e-02	ci right 1.986749e-02	k: 1512	n:80000
Cons ci ratio: 6.881971e-02	ci left: 3.763209e-02	ci right 4.032647e-02	k: 3117	n:80000
KS ci ratio: 9.732527e-02	ci left: 1.890683e-02	ci right 2.085321e-02	k: 1589	n:80000
PKD2   80000 perm   20 sec   (4081 perm/sec)   p_kst 1.986250e-02   p_cons 3.896250e-02   p_joint 1.890000e-02

Outputting figure to mutsig2_images.part000000000131/PKD2.6_2967_80000_0.019863_0.038962_0.0189.png
                gene_name: PKD2
               theta_stop: 0.100 
                    nperm: 80000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.021 
                   p_cons: 0.039 
      ci_cons_bounds_left: 0.038 
     ci_cons_bounds_right: 0.040 
                  p_joint: 0.019 
     ci_joint_bounds_left: 0.018 
    ci_joint_bounds_right: 0.020 

Current progress: 31 percent done.
PIK3C3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.248709e-02	ci left: 2.734923e-01	ci right 2.912347e-01	k: 2823	n:10000
Cons ci ratio: 1.573964e-02	ci left: 8.542685e-01	ci right 8.679204e-01	k: 8612	n:10000
KS ci ratio: 9.549380e-02	ci left: 1.372712e-01	ci right 1.511368e-01	k: 1441	n:10000
PIK3C3   10000 perm   2 sec   (5340 perm/sec)   p_kst 1.441000e-01   p_cons 8.612000e-01   p_joint 2.823000e-01

Outputting figure to mutsig2_images.part000000000131/PIK3C3.5_2764_10000_0.1441_0.8612_0.2823.png
                gene_name: PIK3C3
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 33 percent done.
PIK3CB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.146253e-01	ci left: 9.866755e-02	ci right 1.107638e-01	k: 1046	n:10000
Cons ci ratio: 8.043957e-02	ci left: 1.841239e-01	ci right 1.996560e-01	k: 1918	n:10000
KS ci ratio: 1.219088e-01	ci left: 8.796014e-02	ci right 9.947780e-02	k: 936	n:10000
PIK3CB   10000 perm   2 sec   (5689 perm/sec)   p_kst 9.360000e-02   p_cons 1.918000e-01   p_joint 1.046000e-01

Joint ci ratio: 7.507870e-02	ci left: 1.154284e-01	ci right 1.244824e-01	k: 2398	n:20000
Cons ci ratio: 5.723096e-02	ci left: 1.845340e-01	ci right 1.954563e-01	k: 3799	n:20000
KS ci ratio: 8.442632e-02	ci left: 9.317735e-02	ci right 1.014401e-01	k: 1945	n:20000
PIK3CB   20000 perm   4 sec   (5123 perm/sec)   p_kst 9.725000e-02   p_cons 1.899500e-01   p_joint 1.199000e-01

Outputting figure to mutsig2_images.part000000000131/PIK3CB.4_3299_20000_0.09725_0.18995_0.1199.png
                gene_name: PIK3CB
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.097 
        ci_ks_bounds_left: 0.093 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 35 percent done.
PIK3CD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.185224e-02	ci left: 9.107001e-01	ci right 9.216561e-01	k: 9163	n:10000
KS ci ratio: 8.154618e-03	ci left: 9.545097e-01	ci right 9.624204e-01	k: 9586	n:10000
PIK3CD   10000 perm   2 sec   (6101 perm/sec)   p_kst 9.586000e-01   p_cons 9.163000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000131/PIK3CD.4_3223_10000_0.9586_0.9163_1.png
                gene_name: PIK3CD
               theta_stop: 0.012 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 37 percent done.
PIK3R2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.476226e-02	ci left: 3.294222e-01	ci right 3.480718e-01	k: 3387	n:10000
Cons ci ratio: 8.618673e-02	ci left: 1.639619e-01	ci right 1.788300e-01	k: 1713	n:10000
KS ci ratio: 3.027713e-02	ci left: 6.167323e-01	ci right 6.357941e-01	k: 6263	n:10000
PIK3R2   10000 perm   2 sec   (6142 perm/sec)   p_kst 6.263000e-01   p_cons 1.713000e-01   p_joint 3.387000e-01

Outputting figure to mutsig2_images.part000000000131/PIK3R2.4_2247_10000_0.6263_0.1713_0.3387.png
                gene_name: PIK3R2
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 39 percent done.
PIP5K1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.563421e-02	ci left: 8.559009e-01	ci right 8.694871e-01	k: 8628	n:10000
KS ci ratio: 1.185996e-02	ci left: 9.105972e-01	ci right 9.215590e-01	k: 9162	n:10000
PIP5K1A   10000 perm   2 sec   (6275 perm/sec)   p_kst 9.162000e-01   p_cons 8.628000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000131/PIP5K1A.4_1753_10000_0.9162_0.8628_1.png
                gene_name: PIP5K1A
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 41 percent done.
PIWIL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.514713e-02	ci left: 1.381531e-01	ci right 1.520544e-01	k: 1450	n:10000
Cons ci ratio: 1.174650e-01	ci left: 9.428457e-02	ci right 1.061495e-01	k: 1001	n:10000
KS ci ratio: 5.822401e-02	ci left: 3.027268e-01	ci right 3.209830e-01	k: 3118	n:10000
PIWIL2   10000 perm   2 sec   (5779 perm/sec)   p_kst 3.118000e-01   p_cons 1.001000e-01   p_joint 1.450000e-01

Joint ci ratio: 5.987208e-02	ci left: 1.711892e-01	ci right 1.818050e-01	k: 3529	n:20000
Cons ci ratio: 8.755103e-02	ci left: 8.709768e-02	ci right 9.512166e-02	k: 1821	n:20000
KS ci ratio: 4.133914e-02	ci left: 3.036927e-01	ci right 3.165625e-01	k: 6202	n:20000
PIWIL2   20000 perm   4 sec   (5067 perm/sec)   p_kst 3.101000e-01   p_cons 9.105000e-02   p_joint 1.764500e-01

Outputting figure to mutsig2_images.part000000000131/PIWIL2.4_3010_20000_0.3101_0.09105_0.17645.png
                gene_name: PIWIL2
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.091 
      ci_cons_bounds_left: 0.087 
     ci_cons_bounds_right: 0.095 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 43 percent done.
PIWIL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.744543e-02	ci left: 3.959551e-01	ci right 4.152999e-01	k: 4056	n:10000
Cons ci ratio: 9.871639e-02	ci left: 1.294361e-01	ci right 1.429766e-01	k: 1361	n:10000
KS ci ratio: 2.435966e-02	ci left: 7.124997e-01	ci right 7.301712e-01	k: 7214	n:10000
PIWIL3   10000 perm   2 sec   (5841 perm/sec)   p_kst 7.214000e-01   p_cons 1.361000e-01   p_joint 4.056000e-01

Outputting figure to mutsig2_images.part000000000131/PIWIL3.4_2729_10000_0.7214_0.1361_0.4056.png
                gene_name: PIWIL3
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 45 percent done.
PKD2L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.664360e-02	ci left: 5.237637e-01	ci right 5.434167e-01	k: 5336	n:10000
Cons ci ratio: 5.673863e-02	ci left: 3.138374e-01	ci right 3.322658e-01	k: 3230	n:10000
KS ci ratio: 4.009799e-02	ci left: 4.787572e-01	ci right 4.984494e-01	k: 4886	n:10000
PKD2L1   10000 perm   2 sec   (5059 perm/sec)   p_kst 4.886000e-01   p_cons 3.230000e-01   p_joint 5.336000e-01

Outputting figure to mutsig2_images.part000000000131/PKD2L1.4_2482_10000_0.4886_0.323_0.5336.png
                gene_name: PKD2L1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 47 percent done.
PKLR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.648733e-01	ci left: 4.907401e-02	ci right 5.798834e-02	k: 534	n:10000
Cons ci ratio: 7.441696e-02	ci left: 2.090529e-01	ci right 2.253122e-01	k: 2171	n:10000
KS ci ratio: 1.515559e-01	ci left: 5.793006e-02	ci right 6.752661e-02	k: 626	n:10000
PKLR   10000 perm   2 sec   (5928 perm/sec)   p_kst 6.260000e-02   p_cons 2.171000e-01   p_joint 5.340000e-02

Joint ci ratio: 8.816463e-02	ci left: 8.597060e-02	ci right 9.394908e-02	k: 1798	n:20000
Cons ci ratio: 5.509237e-02	ci left: 1.964048e-01	ci right 2.075819e-01	k: 4039	n:20000
KS ci ratio: 1.055611e-01	ci left: 6.108537e-02	ci right 6.794190e-02	k: 1289	n:20000
PKLR   20000 perm   4 sec   (5358 perm/sec)   p_kst 6.445000e-02   p_cons 2.019500e-01   p_joint 8.990000e-02

Joint ci ratio: 6.557595e-02	ci left: 1.029323e-01	ci right 1.099441e-01	k: 3192	n:30000
Cons ci ratio: 4.455489e-02	ci left: 2.005099e-01	ci right 2.096806e-01	k: 6152	n:30000
KS ci ratio: 8.710876e-02	ci left: 6.047233e-02	ci right 6.601262e-02	k: 1896	n:30000
PKLR   30000 perm   6 sec   (5125 perm/sec)   p_kst 6.320000e-02   p_cons 2.050667e-01   p_joint 1.064000e-01

Outputting figure to mutsig2_images.part000000000131/PKLR.4_1780_30000_0.0632_0.20507_0.1064.png
                gene_name: PKLR
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.063 
        ci_ks_bounds_left: 0.060 
       ci_ks_bounds_right: 0.066 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 49 percent done.
PIGR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.420475e-02	ci left: 3.339906e-01	ci right 3.527007e-01	k: 3433	n:10000
Cons ci ratio: 3.209660e-02	ci left: 5.889150e-01	ci right 6.082275e-01	k: 5986	n:10000
KS ci ratio: 6.339341e-02	ci left: 2.677498e-01	ci right 2.853805e-01	k: 2765	n:10000
PIGR   10000 perm   2 sec   (5869 perm/sec)   p_kst 2.765000e-01   p_cons 5.986000e-01   p_joint 3.433000e-01

Outputting figure to mutsig2_images.part000000000131/PIGR.3_2335_10000_0.2765_0.5986_0.3433.png
                gene_name: PIGR
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 51 percent done.
PIK3R6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.666896e-02	ci left: 8.396916e-01	ci right 8.539057e-01	k: 8469	n:10000
Cons ci ratio: 1.571990e-02	ci left: 8.545745e-01	ci right 8.682142e-01	k: 8615	n:10000
KS ci ratio: 4.265357e-02	ci left: 4.479986e-01	ci right 4.676260e-01	k: 4578	n:10000
PIK3R6   10000 perm   2 sec   (5850 perm/sec)   p_kst 4.578000e-01   p_cons 8.615000e-01   p_joint 8.469000e-01

Outputting figure to mutsig2_images.part000000000131/PIK3R6.3_2340_10000_0.4578_0.8615_0.8469.png
                gene_name: PIK3R6
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 53 percent done.
PILRA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.099457e-02	ci left: 7.688127e-01	ci right 7.852256e-01	k: 7771	n:10000
KS ci ratio: 1.738916e-02	ci left: 8.281881e-01	ci right 8.428159e-01	k: 8356	n:10000
PILRA   10000 perm   1 sec   (6710 perm/sec)   p_kst 8.356000e-01   p_cons 7.771000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000131/PILRA.3_940_10000_0.8356_0.7771_1.png
                gene_name: PILRA
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 55 percent done.
PIP4K2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.062743e-02	ci left: 9.264756e-01	ci right 9.364713e-01	k: 9316	n:10000
KS ci ratio: 1.005822e-02	ci left: 9.334051e-01	ci right 9.429377e-01	k: 9383	n:10000
PIP4K2A   10000 perm   2 sec   (6357 perm/sec)   p_kst 9.383000e-01   p_cons 9.316000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000131/PIP4K2A.3_1261_10000_0.9383_0.9316_1.png
                gene_name: PIP4K2A
               theta_stop: 0.011 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 57 percent done.
PIP4K2C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.379586e-01	ci left: 6.952474e-02	ci right 7.992463e-02	k: 746	n:10000
Cons ci ratio: 2.046152e-01	ci left: 3.176903e-02	ci right 3.910482e-02	k: 353	n:10000
KS ci ratio: 5.282739e-02	ci left: 3.456147e-01	ci right 3.644699e-01	k: 3550	n:10000
PIP4K2C   10000 perm   2 sec   (6403 perm/sec)   p_kst 3.550000e-01   p_cons 3.530000e-02   p_joint 7.460000e-02

Joint ci ratio: 7.078503e-02	ci left: 1.282239e-01	ci right 1.376831e-01	k: 2658	n:20000
Cons ci ratio: 1.522032e-01	ci left: 2.965219e-02	ci right 3.458507e-02	k: 641	n:20000
KS ci ratio: 3.740349e-02	ci left: 3.478171e-01	ci right 3.611252e-01	k: 7089	n:20000
PIP4K2C   20000 perm   4 sec   (5677 perm/sec)   p_kst 3.544500e-01   p_cons 3.205000e-02   p_joint 1.329000e-01

Joint ci ratio: 7.786454e-02	ci left: 7.485877e-02	ci right 8.095661e-02	k: 2336	n:30000
Cons ci ratio: 1.162782e-01	ci left: 3.437385e-02	ci right 3.864985e-02	k: 1094	n:30000
KS ci ratio: 3.047984e-02	ci left: 3.499482e-01	ci right 3.608132e-01	k: 10661	n:30000
PIP4K2C   30000 perm   6 sec   (5241 perm/sec)   p_kst 3.553667e-01   p_cons 3.646667e-02   p_joint 7.786667e-02

Joint ci ratio: 7.160553e-02	ci left: 6.719878e-02	ci right 7.221390e-02	k: 2787	n:40000
Cons ci ratio: 1.064740e-01	ci left: 3.102730e-02	ci right 3.454096e-02	k: 1310	n:40000
KS ci ratio: 2.637327e-02	ci left: 3.510815e-01	ci right 3.604895e-01	k: 14231	n:40000
PIP4K2C   40000 perm   8 sec   (5118 perm/sec)   p_kst 3.557750e-01   p_cons 3.275000e-02   p_joint 6.967500e-02

Joint ci ratio: 5.918429e-02	ci left: 7.826779e-02	ci right 8.306103e-02	k: 4032	n:50000
Cons ci ratio: 9.558830e-02	ci left: 3.098244e-02	ci right 3.411214e-02	k: 1626	n:50000
KS ci ratio: 2.367152e-02	ci left: 3.499865e-01	ci right 3.583905e-01	k: 17709	n:50000
PIP4K2C   50000 perm   10 sec   (5007 perm/sec)   p_kst 3.541800e-01   p_cons 3.252000e-02   p_joint 8.064000e-02

Outputting figure to mutsig2_images.part000000000131/PIP4K2C.3_1306_50000_0.35418_0.03252_0.08064.png
                gene_name: PIP4K2C
               theta_stop: 0.096 
                    nperm: 50000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.033 
      ci_cons_bounds_left: 0.031 
     ci_cons_bounds_right: 0.034 
                  p_joint: 0.081 
     ci_joint_bounds_left: 0.078 
    ci_joint_bounds_right: 0.083 

Current progress: 59 percent done.
PITX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.555350e-02	ci left: 5.387836e-01	ci right 5.583881e-01	k: 5486	n:10000
Cons ci ratio: 8.561466e-02	ci left: 1.658291e-01	ci right 1.807618e-01	k: 1732	n:10000
KS ci ratio: 1.518244e-02	ci left: 8.628422e-01	ci right 8.761417e-01	k: 8696	n:10000
PITX2   10000 perm   2 sec   (6542 perm/sec)   p_kst 8.696000e-01   p_cons 1.732000e-01   p_joint 5.486000e-01

Outputting figure to mutsig2_images.part000000000131/PITX2.3_1179_10000_0.8696_0.1732_0.5486.png
                gene_name: PITX2
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 61 percent done.
PKD2L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.656605e-02	ci left: 8.413215e-01	ci right 8.554749e-01	k: 8485	n:10000
Cons ci ratio: 1.755968e-02	ci left: 8.254414e-01	ci right 8.401642e-01	k: 8329	n:10000
KS ci ratio: 4.221808e-02	ci left: 4.530892e-01	ci right 4.727324e-01	k: 4629	n:10000
PKD2L2   10000 perm   2 sec   (6065 perm/sec)   p_kst 4.629000e-01   p_cons 8.329000e-01   p_joint 8.485000e-01

Outputting figure to mutsig2_images.part000000000131/PKD2L2.3_1898_10000_0.4629_0.8329_0.8485.png
                gene_name: PKD2L2
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 63 percent done.
PKDCC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.985807e-02	ci left: 4.817552e-01	ci right 5.014497e-01	k: 4916	n:10000
KS ci ratio: 4.310302e-02	ci left: 4.428093e-01	ci right 4.624183e-01	k: 4526	n:10000
PKDCC   10000 perm   2 sec   (6491 perm/sec)   p_kst 4.526000e-01   p_cons 4.916000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000131/PKDCC.3_1510_10000_0.4526_0.4916_1.png
                gene_name: PKDCC
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
PKM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.862636e-02	ci left: 3.842059e-01	ci right 4.034560e-01	k: 3938	n:10000
KS ci ratio: 1.319350e-02	ci left: 8.922095e-01	ci right 9.041574e-01	k: 8983	n:10000
PKM2   10000 perm   2 sec   (6362 perm/sec)   p_kst 8.983000e-01   p_cons 3.938000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000131/PKM2.3_1807_10000_0.8983_0.3938_1.png
                gene_name: PKM2
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
PKN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.968641e-02	ci left: 7.906032e-01	ci right 8.064225e-01	k: 7986	n:10000
Cons ci ratio: 1.050197e-02	ci left: 9.280257e-01	ci right 9.379203e-01	k: 9331	n:10000
KS ci ratio: 4.625609e-02	ci left: 4.082083e-01	ci right 4.276396e-01	k: 4179	n:10000
PKN1   10000 perm   2 sec   (6191 perm/sec)   p_kst 4.179000e-01   p_cons 9.331000e-01   p_joint 7.986000e-01

Outputting figure to mutsig2_images.part000000000131/PKN1.3_2960_10000_0.4179_0.9331_0.7986.png
                gene_name: PKN1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 69 percent done.
PIGL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.195093e-02	ci left: 3.532680e-01	ci right 3.722120e-01	k: 3627	n:10000
Cons ci ratio: 1.014049e-01	ci left: 1.233692e-01	ci right 1.366472e-01	k: 1299	n:10000
KS ci ratio: 7.532587e-02	ci left: 2.050098e-01	ci right 2.211576e-01	k: 2130	n:10000
PIGL   10000 perm   1 sec   (7167 perm/sec)   p_kst 2.130000e-01   p_cons 1.299000e-01   p_joint 3.627000e-01

Joint ci ratio: 3.690216e-02	ci left: 3.539907e-01	ci right 3.673498e-01	k: 7213	n:20000
Cons ci ratio: 8.047557e-02	ci left: 1.017662e-01	ci right 1.103488e-01	k: 2120	n:20000
KS ci ratio: 5.289361e-02	ci left: 2.097192e-01	ci right 2.211636e-01	k: 4308	n:20000
PIGL   20000 perm   3 sec   (6283 perm/sec)   p_kst 2.154000e-01   p_cons 1.060000e-01   p_joint 3.606500e-01

Outputting figure to mutsig2_images.part000000000131/PIGL.2_787_20000_0.2154_0.106_0.36065.png
                gene_name: PIGL
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 71 percent done.
PIGO
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.583216e-02	ci left: 6.880881e-01	ci right 7.061970e-01	k: 6972	n:10000
KS ci ratio: 1.764788e-02	ci left: 8.240174e-01	ci right 8.387890e-01	k: 8315	n:10000
PIGO   10000 perm   2 sec   (5878 perm/sec)   p_kst 8.315000e-01   p_cons 6.972000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000131/PIGO.2_3310_10000_0.8315_0.6972_1.png
                gene_name: PIGO
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
PIGW
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.411732e-02	ci left: 4.313368e-01	ci right 4.508976e-01	k: 4411	n:10000
KS ci ratio: 2.924448e-02	ci left: 6.329156e-01	ci right 6.518014e-01	k: 6424	n:10000
PIGW   10000 perm   1 sec   (6967 perm/sec)   p_kst 6.424000e-01   p_cons 4.411000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000131/PIGW.2_1519_10000_0.6424_0.4411_1.png
                gene_name: PIGW
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
PIGZ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.697756e-03	ci left: 9.764223e-01	ci right 9.820937e-01	k: 9794	n:10000
Cons ci ratio: 8.041364e-02	ci left: 1.842223e-01	ci right 1.997575e-01	k: 1919	n:10000
KS ci ratio: 3.999384e-02	ci left: 4.800563e-01	ci right 4.997496e-01	k: 4899	n:10000
PIGZ   10000 perm   2 sec   (6586 perm/sec)   p_kst 4.899000e-01   p_cons 1.919000e-01   p_joint 9.794000e-01

Outputting figure to mutsig2_images.part000000000131/PIGZ.2_1748_10000_0.4899_0.1919_0.9794.png
                gene_name: PIGZ
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 76 percent done.
PIK3R1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.335816e-03	ci left: 9.790923e-01	ci right 9.844218e-01	k: 9819	n:10000
KS ci ratio: 1.027334e-02	ci left: 9.308177e-01	ci right 9.405266e-01	k: 9358	n:10000
PIK3R1   10000 perm   2 sec   (6515 perm/sec)   p_kst 9.358000e-01   p_cons 9.819000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000131/PIK3R1.2_2365_10000_0.9358_0.9819_1.png
                gene_name: PIK3R1
               theta_stop: 0.010 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
PIK3R3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.479894e-02	ci left: 3.291243e-01	ci right 3.477699e-01	k: 3384	n:10000
Cons ci ratio: 2.330761e-02	ci left: 7.300714e-01	ci right 7.473894e-01	k: 7388	n:10000
KS ci ratio: 7.027581e-02	ci left: 2.288905e-01	ci right 2.456629e-01	k: 2372	n:10000
PIK3R3   10000 perm   1 sec   (6782 perm/sec)   p_kst 2.372000e-01   p_cons 7.388000e-01   p_joint 3.384000e-01

Outputting figure to mutsig2_images.part000000000131/PIK3R3.2_1426_10000_0.2372_0.7388_0.3384.png
                gene_name: PIK3R3
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 80 percent done.
PIK3R5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.042826e-01	ci left: 1.173073e-01	ci right 1.303127e-01	k: 1237	n:10000
Cons ci ratio: 3.992190e-02	ci left: 4.809557e-01	ci right 5.006496e-01	k: 4908	n:10000
KS ci ratio: 2.676375e-01	ci left: 1.818649e-02	ci right 2.389730e-02	k: 209	n:10000
PIK3R5   10000 perm   2 sec   (6129 perm/sec)   p_kst 2.090000e-02   p_cons 4.908000e-01   p_joint 1.237000e-01

Joint ci ratio: 5.599701e-02	ci left: 1.912598e-01	ci right 2.023285e-01	k: 3935	n:20000
Cons ci ratio: 2.811006e-02	ci left: 4.859976e-01	ci right 4.999044e-01	k: 9859	n:20000
KS ci ratio: 1.904138e-01	ci left: 1.877169e-02	ci right 2.276934e-02	k: 414	n:20000
PIK3R5   20000 perm   4 sec   (5478 perm/sec)   p_kst 2.070000e-02   p_cons 4.929500e-01   p_joint 1.967500e-01

Joint ci ratio: 2.707672e-02	ci left: 4.056907e-01	ci right 4.168598e-01	k: 12338	n:30000
Cons ci ratio: 2.285691e-02	ci left: 4.893597e-01	ci right 5.007079e-01	k: 14851	n:30000
KS ci ratio: 1.536558e-01	ci left: 1.959977e-02	ci right 2.289386e-02	k: 636	n:30000
PIK3R5   30000 perm   6 sec   (5230 perm/sec)   p_kst 2.120000e-02   p_cons 4.950333e-01   p_joint 4.112667e-01

Joint ci ratio: 2.006537e-02	ci left: 4.833399e-01	ci right 4.931618e-01	k: 19530	n:40000
Cons ci ratio: 1.982298e-02	ci left: 4.894135e-01	ci right 4.992374e-01	k: 19773	n:40000
KS ci ratio: 1.347274e-01	ci left: 1.932710e-02	ci right 2.214308e-02	k: 828	n:40000
PIK3R5   40000 perm   8 sec   (5063 perm/sec)   p_kst 2.070000e-02   p_cons 4.943250e-01   p_joint 4.882500e-01

Joint ci ratio: 1.972781e-02	ci left: 4.368613e-01	ci right 4.455855e-01	k: 22061	n:50000
Cons ci ratio: 1.766257e-02	ci left: 4.918478e-01	ci right 5.006326e-01	k: 24812	n:50000
KS ci ratio: 1.202821e-01	ci left: 1.954755e-02	ci right 2.206852e-02	k: 1039	n:50000
PIK3R5   50000 perm   10 sec   (4933 perm/sec)   p_kst 2.078000e-02   p_cons 4.962400e-01   p_joint 4.412200e-01

Joint ci ratio: 2.437677e-02	ci left: 2.974972e-01	ci right 3.048554e-01	k: 18070	n:60000
Cons ci ratio: 1.608583e-02	ci left: 4.934078e-01	ci right 5.014258e-01	k: 29845	n:60000
KS ci ratio: 1.101180e-01	ci left: 1.954322e-02	ci right 2.183680e-02	k: 1240	n:60000
PIK3R5   60000 perm   12 sec   (4813 perm/sec)   p_kst 2.066667e-02   p_cons 4.974167e-01   p_joint 3.011667e-01

Joint ci ratio: 1.926658e-02	ci left: 3.680185e-01	ci right 3.751922e-01	k: 26012	n:70000
Cons ci ratio: 1.488377e-02	ci left: 4.940034e-01	ci right 5.014254e-01	k: 34840	n:70000
KS ci ratio: 1.024869e-01	ci left: 1.942126e-02	ci right 2.153304e-02	k: 1432	n:70000
PIK3R5   70000 perm   15 sec   (4704 perm/sec)   p_kst 2.045714e-02   p_cons 4.977143e-01   p_joint 3.716000e-01

Joint ci ratio: 2.655309e-02	ci left: 2.112493e-01	ci right 2.169465e-01	k: 17127	n:80000
Cons ci ratio: 1.346717e-02	ci left: 5.108674e-01	ci right 5.178065e-01	k: 41147	n:80000
KS ci ratio: 9.612927e-02	ci left: 1.938276e-02	ci right 2.135224e-02	k: 1628	n:80000
PIK3R5   80000 perm   17 sec   (4607 perm/sec)   p_kst 2.035000e-02   p_cons 5.143375e-01   p_joint 2.140875e-01

Outputting figure to mutsig2_images.part000000000131/PIK3R5.2_2715_80000_0.02035_0.51434_0.21409.png
                gene_name: PIK3R5
               theta_stop: 0.096 
                    nperm: 80000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.021 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 82 percent done.
PIM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.624069e-02	ci left: 5.292700e-01	ci right 5.489072e-01	k: 5391	n:10000
KS ci ratio: 2.529504e-02	ci left: 6.969615e-01	ci right 7.149184e-01	k: 7060	n:10000
PIM1   10000 perm   1 sec   (6913 perm/sec)   p_kst 7.060000e-01   p_cons 5.391000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000131/PIM1.2_966_10000_0.706_0.5391_1.png
                gene_name: PIM1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
PIM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.698263e-02	ci left: 8.347018e-01	ci right 8.490984e-01	k: 8420	n:10000
Cons ci ratio: 3.132093e-02	ci left: 6.006606e-01	ci right 6.198751e-01	k: 6103	n:10000
KS ci ratio: 1.151790e-01	ci left: 9.779067e-02	ci right 1.098412e-01	k: 1037	n:10000
PIM2   10000 perm   1 sec   (7022 perm/sec)   p_kst 1.037000e-01   p_cons 6.103000e-01   p_joint 8.420000e-01

Joint ci ratio: 3.608431e-02	ci left: 3.643490e-01	ci right 3.777885e-01	k: 7421	n:20000
Cons ci ratio: 2.277260e-02	ci left: 5.901634e-01	ci right 6.038084e-01	k: 11940	n:20000
KS ci ratio: 8.175332e-02	ci left: 9.886943e-02	ci right 1.073463e-01	k: 2061	n:20000
PIM2   20000 perm   3 sec   (6234 perm/sec)   p_kst 1.030500e-01   p_cons 5.970000e-01   p_joint 3.710500e-01

Outputting figure to mutsig2_images.part000000000131/PIM2.2_960_20000_0.10305_0.597_0.37105.png
                gene_name: PIM2
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.099 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 86 percent done.
PIP4K2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.737843e-02	ci left: 6.627999e-01	ci right 6.812998e-01	k: 6721	n:10000
Cons ci ratio: 3.501136e-02	ci left: 5.463971e-01	ci right 5.659702e-01	k: 5562	n:10000
KS ci ratio: 1.178575e-01	ci left: 9.370045e-02	ci right 1.055340e-01	k: 995	n:10000
PIP4K2B   10000 perm   1 sec   (7092 perm/sec)   p_kst 9.950000e-02   p_cons 5.562000e-01   p_joint 6.721000e-01

Joint ci ratio: 2.172232e-02	ci left: 6.127293e-01	ci right 6.262359e-01	k: 12390	n:20000
Cons ci ratio: 2.463822e-02	ci left: 5.516851e-01	ci right 5.654978e-01	k: 11172	n:20000
KS ci ratio: 8.469174e-02	ci left: 9.263781e-02	ci right 1.008798e-01	k: 1934	n:20000
PIP4K2B   20000 perm   3 sec   (6269 perm/sec)   p_kst 9.670000e-02   p_cons 5.586000e-01   p_joint 6.195000e-01

Outputting figure to mutsig2_images.part000000000131/PIP4K2B.2_1291_20000_0.0967_0.5586_0.6195.png
                gene_name: PIP4K2B
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.097 
        ci_ks_bounds_left: 0.093 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 88 percent done.
PIP5K1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.799080e-02	ci left: 3.904780e-01	ci right 4.097802e-01	k: 4001	n:10000
Cons ci ratio: 9.792711e-02	ci left: 1.312962e-01	ci right 1.449153e-01	k: 1380	n:10000
KS ci ratio: 7.198729e-02	ci left: 2.203995e-01	ci right 2.369589e-01	k: 2286	n:10000
PIP5K1B   10000 perm   2 sec   (6628 perm/sec)   p_kst 2.286000e-01   p_cons 1.380000e-01   p_joint 4.001000e-01

Outputting figure to mutsig2_images.part000000000131/PIP5K1B.2_1675_10000_0.2286_0.138_0.4001.png
                gene_name: PIP5K1B
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 90 percent done.
PIP5K1C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.011880e-02	ci left: 9.326804e-01	ci right 9.422628e-01	k: 9376	n:10000
KS ci ratio: 6.979389e-02	ci left: 2.313597e-01	ci right 2.481922e-01	k: 2397	n:10000
PIP5K1C   10000 perm   2 sec   (6425 perm/sec)   p_kst 2.397000e-01   p_cons 9.376000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000131/PIP5K1C.2_2079_10000_0.2397_0.9376_1.png
                gene_name: PIP5K1C
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
PITPNM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.928552e-01	ci left: 1.502126e-02	ci right 2.026513e-02	k: 175	n:10000
Cons ci ratio: 4.516126e-02	ci left: 4.198695e-01	ci right 4.393715e-01	k: 4296	n:10000
KS ci ratio: 4.208622e-01	ci left: 6.794980e-03	ci right 1.049980e-02	k: 85	n:10000
PITPNM2   10000 perm   2 sec   (5578 perm/sec)   p_kst 8.500000e-03   p_cons 4.296000e-01   p_joint 1.750000e-02

Joint ci ratio: 9.123533e-02	ci left: 8.063194e-02	ci right 8.838936e-02	k: 1689	n:20000
Cons ci ratio: 3.235393e-02	ci left: 4.163892e-01	ci right 4.301331e-01	k: 8465	n:20000
KS ci ratio: 2.793383e-01	ci left: 8.388326e-03	ci right 1.115700e-02	k: 194	n:20000
PITPNM2   20000 perm   4 sec   (5008 perm/sec)   p_kst 9.700000e-03   p_cons 4.232500e-01   p_joint 8.445000e-02

Joint ci ratio: 1.116503e-01	ci left: 3.725903e-02	ci right 4.169739e-02	k: 1183	n:30000
Cons ci ratio: 2.658883e-02	ci left: 4.145061e-01	ci right 4.257094e-01	k: 12603	n:30000
KS ci ratio: 2.344363e-01	ci left: 8.150696e-03	ci right 1.034592e-02	k: 276	n:30000
PITPNM2   30000 perm   6 sec   (4787 perm/sec)   p_kst 9.200000e-03   p_cons 4.201000e-01   p_joint 3.943333e-02

Joint ci ratio: 9.824692e-02	ci left: 3.639149e-02	ci right 4.017592e-02	k: 1530	n:40000
Cons ci ratio: 2.305888e-02	ci left: 4.145826e-01	ci right 4.242791e-01	k: 16777	n:40000
KS ci ratio: 1.993389e-01	ci left: 8.620141e-03	ci right 1.055206e-02	k: 382	n:40000
PITPNM2   40000 perm   9 sec   (4641 perm/sec)   p_kst 9.550000e-03   p_cons 4.194250e-01   p_joint 3.825000e-02

Joint ci ratio: 7.197625e-02	ci left: 5.398085e-02	ci right 5.803090e-02	k: 2799	n:50000
Cons ci ratio: 2.065965e-02	ci left: 4.142707e-01	ci right 4.229388e-01	k: 20930	n:50000
KS ci ratio: 1.749582e-01	ci left: 9.069876e-03	ci right 1.082772e-02	k: 496	n:50000
PITPNM2   50000 perm   11 sec   (4520 perm/sec)   p_kst 9.920000e-03   p_cons 4.186000e-01   p_joint 5.598000e-02

Joint ci ratio: 7.365155e-02	ci left: 4.342045e-02	ci right 4.675706e-02	k: 2704	n:60000
Cons ci ratio: 1.879914e-02	ci left: 4.162128e-01	ci right 4.241282e-01	k: 25210	n:60000
KS ci ratio: 1.592299e-01	ci left: 9.203287e-03	ci right 1.081131e-02	k: 599	n:60000
PITPNM2   60000 perm   14 sec   (4426 perm/sec)   p_kst 9.983333e-03   p_cons 4.201667e-01   p_joint 4.506667e-02

Joint ci ratio: 7.764950e-02	ci left: 3.376287e-02	ci right 3.650441e-02	k: 2458	n:70000
Cons ci ratio: 1.738668e-02	ci left: 4.170106e-01	ci right 4.243389e-01	k: 29447	n:70000
KS ci ratio: 1.471003e-01	ci left: 9.303668e-03	ci right 1.079451e-02	k: 702	n:70000
PITPNM2   70000 perm   16 sec   (4339 perm/sec)   p_kst 1.002857e-02   p_cons 4.206714e-01   p_joint 3.511429e-02

Joint ci ratio: 7.402843e-02	ci left: 3.260752e-02	ci right 3.512643e-02	k: 2708	n:80000
Cons ci ratio: 1.624326e-02	ci left: 4.178626e-01	ci right 4.247181e-01	k: 33703	n:80000
KS ci ratio: 1.393115e-01	ci left: 9.116886e-03	ci right 1.049401e-02	k: 783	n:80000
PITPNM2   80000 perm   19 sec   (4261 perm/sec)   p_kst 9.787500e-03   p_cons 4.212875e-01   p_joint 3.385000e-02

Joint ci ratio: 6.184373e-02	ci left: 4.141021e-02	ci right 4.406381e-02	k: 3845	n:90000
Cons ci ratio: 1.532581e-02	ci left: 4.176938e-01	ci right 4.241558e-01	k: 37883	n:90000
KS ci ratio: 1.292874e-01	ci left: 9.457016e-03	ci right 1.077485e-02	k: 909	n:90000
PITPNM2   90000 perm   22 sec   (4183 perm/sec)   p_kst 1.010000e-02   p_cons 4.209222e-01   p_joint 4.272222e-02

Joint ci ratio: 5.301962e-02	ci left: 5.045416e-02	ci right 5.321191e-02	k: 5182	n:100000
Cons ci ratio: 1.454123e-02	ci left: 4.177974e-01	ci right 4.239272e-01	k: 42086	n:100000
KS ci ratio: 1.219910e-01	ci left: 9.596174e-03	ci right 1.085248e-02	k: 1021	n:100000
PITPNM2   100000 perm   24 sec   (4113 perm/sec)   p_kst 1.021000e-02   p_cons 4.208600e-01   p_joint 5.182000e-02

Joint ci ratio: 5.072278e-02	ci left: 5.019222e-02	ci right 5.281331e-02	k: 5664	n:110000
Cons ci ratio: 1.387918e-02	ci left: 4.174260e-01	ci right 4.232691e-01	k: 46238	n:110000
KS ci ratio: 1.167448e-01	ci left: 9.552817e-03	ci right 1.074595e-02	k: 1115	n:110000
PITPNM2   110000 perm   27 sec   (4045 perm/sec)   p_kst 1.013636e-02   p_cons 4.203455e-01   p_joint 5.149091e-02

Joint ci ratio: 4.576853e-02	ci left: 5.628832e-02	ci right 5.893311e-02	k: 6912	n:120000
Cons ci ratio: 1.327617e-02	ci left: 4.179962e-01	ci right 4.235910e-01	k: 50495	n:120000
KS ci ratio: 1.124511e-01	ci left: 9.460944e-03	ci right 1.059626e-02	k: 1202	n:120000
PITPNM2   120000 perm   30 sec   (3981 perm/sec)   p_kst 1.001667e-02   p_cons 4.207917e-01   p_joint 5.760000e-02

Joint ci ratio: 4.287239e-02	ci left: 5.912621e-02	ci right 6.172421e-02	k: 7854	n:130000
Cons ci ratio: 1.277911e-02	ci left: 4.171997e-01	ci right 4.225731e-01	k: 54585	n:130000
KS ci ratio: 1.073449e-01	ci left: 9.608486e-03	ci right 1.070584e-02	k: 1319	n:130000
PITPNM2   130000 perm   33 sec   (3919 perm/sec)   p_kst 1.014615e-02   p_cons 4.198846e-01   p_joint 6.041538e-02

Joint ci ratio: 4.241019e-02	ci left: 5.629324e-02	ci right 5.873941e-02	k: 8051	n:140000
Cons ci ratio: 1.231298e-02	ci left: 4.173485e-01	ci right 4.225262e-01	k: 58791	n:140000
KS ci ratio: 1.032765e-01	ci left: 9.659382e-03	ci right 1.071820e-02	k: 1425	n:140000
PITPNM2   140000 perm   36 sec   (3862 perm/sec)   p_kst 1.017857e-02   p_cons 4.199357e-01   p_joint 5.750714e-02

Joint ci ratio: 4.044051e-02	ci left: 5.775337e-02	ci right 6.014372e-02	k: 8841	n:150000
Cons ci ratio: 1.189553e-02	ci left: 4.174339e-01	ci right 4.224358e-01	k: 62990	n:150000
KS ci ratio: 1.001014e-01	ci left: 9.613146e-03	ci right 1.063259e-02	k: 1517	n:150000
PITPNM2   150000 perm   39 sec   (3805 perm/sec)   p_kst 1.011333e-02   p_cons 4.199333e-01   p_joint 5.894000e-02

Joint ci ratio: 3.889296e-02	ci left: 5.853773e-02	ci right 6.086576e-02	k: 9551	n:160000
Cons ci ratio: 1.151357e-02	ci left: 4.176924e-01	ci right 4.225355e-01	k: 67218	n:160000
KS ci ratio: 9.708036e-02	ci left: 9.597527e-03	ci right 1.058285e-02	k: 1613	n:160000
PITPNM2   160000 perm   43 sec   (3751 perm/sec)   p_kst 1.008125e-02   p_cons 4.201125e-01   p_joint 5.969375e-02

Outputting figure to mutsig2_images.part000000000131/PITPNM2.2_4146_160000_0.010081_0.42011_0.059694.png
                gene_name: PITPNM2
               theta_stop: 0.097 
                    nperm: 160000 
                     p_ks: 0.010 
        ci_ks_bounds_left: 0.0096 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.060 
     ci_joint_bounds_left: 0.059 
    ci_joint_bounds_right: 0.061 

Current progress: 94 percent done.
PITPNM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.618013e-02	ci left: 4.090055e-01	ci right 4.284419e-01	k: 4187	n:10000
KS ci ratio: 4.269655e-02	ci left: 4.474996e-01	ci right 4.671253e-01	k: 4573	n:10000
PITPNM3   10000 perm   2 sec   (5956 perm/sec)   p_kst 4.573000e-01   p_cons 4.187000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000131/PITPNM3.2_3005_10000_0.4573_0.4187_1.png
                gene_name: PITPNM3
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
PITX3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.227052e-03	ci left: 9.863209e-01	ci right 9.905875e-01	k: 9886	n:10000
Cons ci ratio: 3.083585e-02	ci left: 6.080924e-01	ci right 6.272390e-01	k: 6177	n:10000
KS ci ratio: 2.765834e-02	ci left: 6.582693e-01	ci right 6.768330e-01	k: 6676	n:10000
PITX3   10000 perm   1 sec   (6957 perm/sec)   p_kst 6.676000e-01   p_cons 6.177000e-01   p_joint 9.886000e-01

Outputting figure to mutsig2_images.part000000000131/PITX3.2_921_10000_0.6676_0.6177_0.9886.png
                gene_name: PITX3
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 98 percent done.
PJA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.135904e-02	ci left: 9.171884e-01	ci right 9.277639e-01	k: 9226	n:10000
Cons ci ratio: 3.821111e-02	ci left: 5.028508e-01	ci right 5.225418e-01	k: 5127	n:10000
KS ci ratio: 5.395331e-02	ci left: 3.360765e-01	ci right 3.548136e-01	k: 3454	n:10000
PJA2   10000 perm   2 sec   (6367 perm/sec)   p_kst 3.454000e-01   p_cons 5.127000e-01   p_joint 9.226000e-01

Outputting figure to mutsig2_images.part000000000131/PJA2.2_2163_10000_0.3454_0.5127_0.9226.png
                gene_name: PJA2
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000131
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 131 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1422>
Subject: Job 8004404: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1422>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000132> was used as the working directory.
Started at Sun Nov 11 15:12:39 2012
Results reported at Sun Nov 11 16:44:09 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000132.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000132.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 132  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000132.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   6121.80 sec.
    Max Memory :      4834 MB
    Max Swap   :      7167 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
132
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 132
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 132: processing genes 11853 - 11942
Calculating significance of each gene.
Using projection method.
11853	PKN2	7.598957e-01
11854	PKN3	9.495001e-01
11855	PKNOX1	4.215732e-01
11856	PKNOX2	3.668874e-01
11857	PKP1	1
11858	PKP2	7.182828e-01
11859	PKP3	1
11860	PKP4	9.828182e-01
11861	PLA1A	6.594518e-02
11862	PLA2G10	1
11863	PLA2G12A	1
11864	PLA2G12B	1
11865	PLA2G15	6.029056e-01
11866	PLA2G16	1
11867	PLA2G1B	1
11868	PLA2G2A	2.757716e-01
11869	PLA2G2C	1
11870	PLA2G2D	1
11871	PLA2G2E	4.754691e-02
11872	PLA2G2F	1.239802e-01
11873	PLA2G3	4.986968e-01
11874	PLA2G4A	5.201318e-01
11875	PLA2G4B	1
11876	PLA2G4C	4.945952e-01
11877	PLA2G4D	1
11878	PLA2G4E	7.579673e-01
11879	PLA2G4F	9.393762e-01
11880	PLA2G5	8.015326e-03
11881	PLA2G6	2.334587e-01
11882	PLA2G7	8.137705e-01
11883	PLA2R1	9.527089e-01
11884	PLAA	8.847281e-01
11885	PLAC1	1
11886	PLAC1L	3.089839e-01
11887	PLAC4	1.361180e-01
11888	PLAC8	2.607769e-01
11889	PLAC8L1	1
11890	PLAC9	1
11891	PLAG1	8.198897e-01
11892	PLAGL1	1
11893	PLAGL2	3.838202e-01
11894	PLAT	8.607859e-01
11895	PLAU	5.887810e-01
11896	PLAUR	3.272424e-01
11897	PLB1	5.999919e-01
11898	PLBD1	7.560862e-01
11899	PLBD2	2.161457e-01
11900	PLCB1	1
11901	PLCB2	5.329744e-01
11902	PLCB3	7.961042e-01
11903	PLCB4	9.276282e-01
11904	PLCD1	9.172854e-01
11905	PLCD3	7.980726e-01
11906	PLCD4	1
11907	PLCE1	9.454472e-01
11908	PLCG1	1
11909	PLCG2	7.392231e-01
11910	PLCH1	9.965238e-01
11911	PLCH2	9.491263e-01
11912	PLCL1	6.471084e-01
11913	PLCL2	6.708500e-01
11914	PLCXD1	4.690936e-01
11915	PLCXD2	3.680042e-01
11916	PLCXD3	1
11917	PLCZ1	9.520866e-02
11918	PLD1	8.702490e-01
11919	PLD2	9.509792e-01
11920	PLD3	6.653216e-01
11921	PLD4	5.655248e-02
11922	PLD5	6.804937e-01
11923	PLD6	1
11924	PLDN	1
11925	PLEC	1
11926	PLEK	4.237666e-01
11927	PLEK2	3.609799e-01
11928	PLEKHA1	3.220715e-01
11929	PLEKHA2	7.970151e-01
11930	PLEKHA3	1.738903e-01
11931	PLEKHA4	1
11932	PLEKHA5	9.345566e-01
11933	PLEKHA6	1
11934	PLEKHA7	9.543660e-01
11935	PLEKHA8	3.967516e-01
11936	PLEKHA9	7.732351e-01
11937	PLEKHB1	1
11938	PLEKHB2	1
11939	PLEKHF1	4.130147e-01
11940	PLEKHF2	1
11941	PLEKHG1	9.252030e-01
11942	PLEKHG2	1
Done

Running MutSig 2:
Scatter job 132: processing genes 11853 - 11942
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
PLCH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.461276e-02	ci left: 4.258518e-01	ci right 4.453858e-01	k: 4356	n:10000
Cons ci ratio: 4.128764e-02	ci left: 4.641722e-01	ci right 4.838429e-01	k: 4740	n:10000
KS ci ratio: 5.830549e-02	ci left: 3.021317e-01	ci right 3.203783e-01	k: 3112	n:10000
PLCH1   10000 perm   3 sec   (3558 perm/sec)   p_kst 3.112000e-01   p_cons 4.740000e-01   p_joint 4.356000e-01

Outputting figure to mutsig2_images.part000000000132/PLCH1.17_5189_10000_0.3112_0.474_0.4356.png
                gene_name: PLCH1
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 2 percent done.
PLEC
Processing conservation and coverage...
67% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.458093e-01	ci left: 6.246605e-02	ci right 7.238775e-02	k: 673	n:10000
Cons ci ratio: 1.505339e-01	ci left: 5.870163e-02	ci right 6.835455e-02	k: 634	n:10000
KS ci ratio: 8.561466e-02	ci left: 1.658291e-01	ci right 1.807618e-01	k: 1732	n:10000
PLEC   10000 perm   5 sec   (2078 perm/sec)   p_kst 1.732000e-01   p_cons 6.340000e-02   p_joint 6.730000e-02

Joint ci ratio: 1.024142e-01	ci left: 6.474425e-02	ci right 7.178190e-02	k: 1364	n:20000
Cons ci ratio: 1.064906e-01	ci left: 6.006147e-02	ci right 6.686612e-02	k: 1268	n:20000
KS ci ratio: 5.953444e-02	ci left: 1.728196e-01	ci right 1.834741e-01	k: 3562	n:20000
PLEC   20000 perm   10 sec   (1947 perm/sec)   p_kst 1.781000e-01   p_cons 6.340000e-02   p_joint 6.820000e-02

Joint ci ratio: 8.650189e-02	ci left: 6.128872e-02	ci right 6.686273e-02	k: 1921	n:30000
Cons ci ratio: 7.976814e-02	ci left: 7.152057e-02	ci right 7.749548e-02	k: 2234	n:30000
KS ci ratio: 4.886877e-02	ci left: 1.722667e-01	ci right 1.809293e-01	k: 5297	n:30000
PLEC   30000 perm   16 sec   (1836 perm/sec)   p_kst 1.765667e-01   p_cons 7.446667e-02   p_joint 6.403333e-02

Outputting figure to mutsig2_images.part000000000132/PLEC.14_14884_30000_0.17657_0.074467_0.064033.png
                gene_name: PLEC
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.074 
      ci_cons_bounds_left: 0.072 
     ci_cons_bounds_right: 0.077 
                  p_joint: 0.064 
     ci_joint_bounds_left: 0.061 
    ci_joint_bounds_right: 0.067 

Current progress: 4 percent done.
PLCE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.814967e-02	ci left: 2.400544e-01	ci right 2.570923e-01	k: 2485	n:10000
Cons ci ratio: 4.366397e-02	ci left: 4.364239e-01	ci right 4.560074e-01	k: 4462	n:10000
KS ci ratio: 8.618673e-02	ci left: 1.639619e-01	ci right 1.788300e-01	k: 1713	n:10000
PLCE1   10000 perm   3 sec   (3170 perm/sec)   p_kst 1.713000e-01   p_cons 4.462000e-01   p_joint 2.485000e-01

Outputting figure to mutsig2_images.part000000000132/PLCE1.13_7319_10000_0.1713_0.4462_0.2485.png
                gene_name: PLCE1
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 6 percent done.
PLCL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.823649e-01	ci left: 8.414755e-03	ci right 1.247803e-02	k: 103	n:10000
Cons ci ratio: 1.130871e+00	ci left: 5.492399e-04	ci right 1.967349e-03	k: 11	n:10000
KS ci ratio: 1.318562e-01	ci left: 7.582209e-02	ci right 8.662335e-02	k: 811	n:10000
PLCL1   10000 perm   3 sec   (3778 perm/sec)   p_kst 8.110000e-02   p_cons 1.100000e-03   p_joint 1.030000e-02

Joint ci ratio: 3.677103e-01	ci left: 4.613191e-03	ci right 6.734416e-03	k: 112	n:20000
Cons ci ratio: 9.235139e-01	ci left: 4.952318e-04	ci right 1.360585e-03	k: 17	n:20000
KS ci ratio: 9.390070e-02	ci left: 7.637423e-02	ci right 8.394836e-02	k: 1602	n:20000
PLCL1   20000 perm   6 sec   (3537 perm/sec)   p_kst 8.010000e-02   p_cons 8.500000e-04   p_joint 5.600000e-03

Joint ci ratio: 4.036765e-01	ci left: 2.502807e-03	ci right 3.796384e-03	k: 93	n:30000
Cons ci ratio: 7.540522e-01	ci left: 5.662111e-04	ci right 1.269611e-03	k: 26	n:30000
KS ci ratio: 7.618039e-02	ci left: 7.800215e-02	ci right 8.421259e-02	k: 2432	n:30000
PLCL1   30000 perm   9 sec   (3408 perm/sec)   p_kst 8.106667e-02   p_cons 8.666667e-04   p_joint 3.100000e-03

Joint ci ratio: 4.714995e-01	ci left: 1.320351e-03	ci right 2.154664e-03	k: 68	n:40000
Cons ci ratio: 6.926788e-01	ci left: 5.266337e-04	ci right 1.099872e-03	k: 31	n:40000
KS ci ratio: 6.564461e-02	ci left: 7.915681e-02	ci right 8.455407e-02	k: 3273	n:40000
PLCL1   40000 perm   12 sec   (3317 perm/sec)   p_kst 8.182500e-02   p_cons 7.750000e-04   p_joint 1.700000e-03

Joint ci ratio: 2.392563e-01	ci left: 4.701240e-03	ci right 5.997209e-03	k: 266	n:50000
Cons ci ratio: 5.381626e-01	ci left: 7.768163e-04	ci right 1.363601e-03	k: 52	n:50000
KS ci ratio: 5.827740e-02	ci left: 8.055662e-02	ci right 8.541192e-02	k: 4148	n:50000
PLCL1   50000 perm   15 sec   (3253 perm/sec)   p_kst 8.296000e-02   p_cons 1.040000e-03   p_joint 5.320000e-03

Joint ci ratio: 2.444748e-01	ci left: 3.745242e-03	ci right 4.803592e-03	k: 255	n:60000
Cons ci ratio: 5.016452e-01	ci left: 7.631894e-04	ci right 1.287013e-03	k: 60	n:60000
KS ci ratio: 5.329794e-02	ci left: 8.049158e-02	ci right 8.491555e-02	k: 4961	n:60000
PLCL1   60000 perm   19 sec   (3204 perm/sec)   p_kst 8.268333e-02   p_cons 1.000000e-03   p_joint 4.250000e-03

Joint ci ratio: 2.350618e-01	ci left: 3.492134e-03	ci right 4.435431e-03	k: 276	n:70000
Cons ci ratio: 4.617355e-01	ci left: 7.922479e-04	ci right 1.279214e-03	k: 71	n:70000
KS ci ratio: 4.933506e-02	ci left: 8.068394e-02	ci right 8.477929e-02	k: 5790	n:70000
PLCL1   70000 perm   22 sec   (3156 perm/sec)   p_kst 8.271429e-02   p_cons 1.014286e-03   p_joint 3.942857e-03

Joint ci ratio: 2.334351e-01	ci left: 3.102607e-03	ci right 3.934039e-03	k: 280	n:80000
Cons ci ratio: 4.465076e-01	ci left: 7.485627e-04	ci right 1.188925e-03	k: 76	n:80000
KS ci ratio: 4.602863e-02	ci left: 8.120848e-02	ci right 8.504681e-02	k: 6649	n:80000
PLCL1   80000 perm   26 sec   (3111 perm/sec)   p_kst 8.311250e-02   p_cons 9.500000e-04   p_joint 3.500000e-03

Joint ci ratio: 2.240767e-01	ci left: 3.009246e-03	ci right 3.778867e-03	k: 304	n:90000
Cons ci ratio: 4.353571e-01	ci left: 7.048946e-04	ci right 1.106179e-03	k: 80	n:90000
KS ci ratio: 4.346677e-02	ci left: 8.107349e-02	ci right 8.468678e-02	k: 7458	n:90000
PLCL1   90000 perm   29 sec   (3068 perm/sec)   p_kst 8.286667e-02   p_cons 8.888889e-04   p_joint 3.377778e-03

Joint ci ratio: 2.331021e-01	ci left: 2.491407e-03	ci right 3.157950e-03	k: 281	n:100000
Cons ci ratio: 4.107386e-01	ci left: 7.237665e-04	ci right 1.106139e-03	k: 90	n:100000
KS ci ratio: 4.116525e-02	ci left: 8.142599e-02	ci right 8.485824e-02	k: 8313	n:100000
PLCL1   100000 perm   33 sec   (3018 perm/sec)   p_kst 8.313000e-02   p_cons 9.000000e-04   p_joint 2.810000e-03

Joint ci ratio: 2.216103e-01	ci left: 2.522123e-03	ci right 3.159084e-03	k: 311	n:110000
Cons ci ratio: 3.978384e-01	ci left: 7.069673e-04	ci right 1.065647e-03	k: 96	n:110000
KS ci ratio: 3.916646e-02	ci left: 8.182661e-02	ci right 8.510448e-02	k: 9180	n:110000
PLCL1   110000 perm   37 sec   (2975 perm/sec)   p_kst 8.345455e-02   p_cons 8.727273e-04   p_joint 2.827273e-03

Joint ci ratio: 2.181589e-01	ci left: 2.390671e-03	ci right 2.983769e-03	k: 321	n:120000
Cons ci ratio: 3.842194e-01	ci left: 7.006518e-04	ci right 1.040884e-03	k: 103	n:120000
KS ci ratio: 3.751465e-02	ci left: 8.183331e-02	ci right 8.497019e-02	k: 10007	n:120000
PLCL1   120000 perm   41 sec   (2932 perm/sec)   p_kst 8.339167e-02   p_cons 8.583333e-04   p_joint 2.675000e-03

Joint ci ratio: 1.834499e-01	ci left: 3.178899e-03	ci right 3.828174e-03	k: 454	n:130000
Cons ci ratio: 3.669792e-01	ci left: 7.164212e-04	ci right 1.044963e-03	k: 113	n:130000
KS ci ratio: 3.598321e-02	ci left: 8.214662e-02	ci right 8.516428e-02	k: 10874	n:130000
PLCL1   130000 perm   45 sec   (2893 perm/sec)   p_kst 8.364615e-02   p_cons 8.692308e-04   p_joint 3.492308e-03

Joint ci ratio: 1.857391e-01	ci left: 2.876852e-03	ci right 3.472591e-03	k: 443	n:140000
Cons ci ratio: 3.562083e-01	ci left: 7.107061e-04	ci right 1.024847e-03	k: 120	n:140000
KS ci ratio: 3.475619e-02	ci left: 8.184339e-02	ci right 8.474532e-02	k: 11660	n:140000
PLCL1   140000 perm   49 sec   (2856 perm/sec)   p_kst 8.328571e-02   p_cons 8.571429e-04   p_joint 3.164286e-03

Joint ci ratio: 1.799568e-01	ci left: 2.869546e-03	ci right 3.443258e-03	k: 472	n:150000
Cons ci ratio: 3.449872e-01	ci left: 7.119635e-04	ci right 1.014534e-03	k: 128	n:150000
KS ci ratio: 3.362310e-02	ci left: 8.168799e-02	ci right 8.448815e-02	k: 12462	n:150000
PLCL1   150000 perm   53 sec   (2821 perm/sec)   p_kst 8.308000e-02   p_cons 8.533333e-04   p_joint 3.146667e-03

Joint ci ratio: 1.773611e-01	ci left: 2.773774e-03	ci right 3.319480e-03	k: 486	n:160000
Cons ci ratio: 3.347637e-01	ci left: 7.131995e-04	ci right 1.005377e-03	k: 136	n:160000
KS ci ratio: 3.259538e-02	ci left: 8.154718e-02	ci right 8.425546e-02	k: 13263	n:160000
PLCL1   160000 perm   57 sec   (2785 perm/sec)   p_kst 8.289375e-02   p_cons 8.500000e-04   p_joint 3.037500e-03

Joint ci ratio: 1.853732e-01	ci left: 2.380333e-03	ci right 2.872168e-03	k: 445	n:170000
Cons ci ratio: 3.265273e-01	ci left: 7.090052e-04	ci right 9.908196e-04	k: 143	n:170000
KS ci ratio: 3.160628e-02	ci left: 8.166354e-02	ci right 8.429188e-02	k: 14105	n:170000
PLCL1   170000 perm   62 sec   (2748 perm/sec)   p_kst 8.297059e-02   p_cons 8.411765e-04   p_joint 2.617647e-03

Joint ci ratio: 1.525375e-01	ci left: 3.376653e-03	ci right 3.939519e-03	k: 657	n:180000
Cons ci ratio: 3.137143e-01	ci left: 7.309298e-04	ci right 1.007776e-03	k: 155	n:180000
KS ci ratio: 3.075258e-02	ci left: 8.151983e-02	ci right 8.407141e-02	k: 14902	n:180000
PLCL1   180000 perm   66 sec   (2714 perm/sec)   p_kst 8.278889e-02   p_cons 8.611111e-04   p_joint 3.650000e-03

Joint ci ratio: 1.486363e-01	ci left: 3.376204e-03	ci right 3.923322e-03	k: 692	n:190000
Cons ci ratio: 3.107453e-01	ci left: 7.070107e-04	ci right 9.717598e-04	k: 158	n:190000
KS ci ratio: 2.996555e-02	ci left: 8.138688e-02	ci right 8.386798e-02	k: 15698	n:190000
PLCL1   190000 perm   71 sec   (2682 perm/sec)   p_kst 8.262105e-02   p_cons 8.315789e-04   p_joint 3.642105e-03

Joint ci ratio: 1.458262e-01	ci left: 3.337416e-03	ci right 3.867132e-03	k: 719	n:200000
Cons ci ratio: 3.050449e-01	ci left: 6.993423e-04	ci right 9.554830e-04	k: 164	n:200000
KS ci ratio: 2.921959e-02	ci left: 8.135242e-02	ci right 8.376969e-02	k: 16511	n:200000
PLCL1   200000 perm   76 sec   (2649 perm/sec)   p_kst 8.255500e-02   p_cons 8.200000e-04   p_joint 3.595000e-03

Joint ci ratio: 1.504144e-01	ci left: 2.981275e-03	ci right 3.470692e-03	k: 676	n:210000
Cons ci ratio: 2.987741e-01	ci left: 6.968490e-04	ci right 9.458346e-04	k: 171	n:210000
KS ci ratio: 2.849535e-02	ci left: 8.148753e-02	ci right 8.384781e-02	k: 17359	n:210000
PLCL1   210000 perm   80 sec   (2618 perm/sec)   p_kst 8.266190e-02   p_cons 8.142857e-04   p_joint 3.219048e-03

Joint ci ratio: 1.469809e-01	ci left: 2.985806e-03	ci right 3.463795e-03	k: 708	n:220000
Cons ci ratio: 2.896535e-01	ci left: 7.114857e-04	ci right 9.565199e-04	k: 182	n:220000
KS ci ratio: 2.781991e-02	ci left: 8.162458e-02	ci right 8.393189e-02	k: 18210	n:220000
PLCL1   220000 perm   85 sec   (2588 perm/sec)   p_kst 8.277273e-02   p_cons 8.272727e-04   p_joint 3.218182e-03

Joint ci ratio: 1.440652e-01	ci left: 2.977483e-03	ci right 3.443871e-03	k: 737	n:230000
Cons ci ratio: 2.805974e-01	ci left: 7.289967e-04	ci right 9.708247e-04	k: 194	n:230000
KS ci ratio: 2.718800e-02	ci left: 8.176326e-02	ci right 8.402117e-02	k: 19064	n:230000
PLCL1   230000 perm   90 sec   (2559 perm/sec)   p_kst 8.288696e-02   p_cons 8.434783e-04   p_joint 3.204348e-03

Joint ci ratio: 1.415944e-01	ci left: 2.957881e-03	ci right 3.412581e-03	k: 763	n:240000
Cons ci ratio: 2.784668e-01	ci left: 7.102446e-04	ci right 9.437492e-04	k: 197	n:240000
KS ci ratio: 2.659582e-02	ci left: 8.189922e-02	ci right 8.411086e-02	k: 19920	n:240000
PLCL1   240000 perm   95 sec   (2530 perm/sec)   p_kst 8.300000e-02   p_cons 8.208333e-04   p_joint 3.179167e-03

Joint ci ratio: 1.396015e-01	ci left: 2.924467e-03	ci right 3.367176e-03	k: 785	n:250000
Cons ci ratio: 2.750178e-01	ci left: 7.004466e-04	ci right 9.273844e-04	k: 202	n:250000
KS ci ratio: 2.602229e-02	ci left: 8.213214e-02	ci right 8.430153e-02	k: 20803	n:250000
PLCL1   250000 perm   100 sec   (2501 perm/sec)   p_kst 8.321200e-02   p_cons 8.080000e-04   p_joint 3.140000e-03

Joint ci ratio: 1.372650e-01	ci left: 2.912236e-03	ci right 3.345112e-03	k: 812	n:260000
Cons ci ratio: 2.691164e-01	ci left: 7.057611e-04	ci right 9.286861e-04	k: 211	n:260000
KS ci ratio: 2.550934e-02	ci left: 8.219849e-02	ci right 8.432620e-02	k: 21647	n:260000
PLCL1   260000 perm   105 sec   (2474 perm/sec)   p_kst 8.325769e-02   p_cons 8.115385e-04   p_joint 3.123077e-03

Joint ci ratio: 1.378696e-01	ci left: 2.779328e-03	ci right 3.194417e-03	k: 805	n:270000
Cons ci ratio: 2.458465e-01	ci left: 8.251652e-04	ci right 1.059834e-03	k: 253	n:270000
KS ci ratio: 2.505658e-02	ci left: 8.207249e-02	ci right 8.415869e-02	k: 22440	n:270000
PLCL1   270000 perm   110 sec   (2448 perm/sec)   p_kst 8.311111e-02   p_cons 9.370370e-04   p_joint 2.981481e-03

Joint ci ratio: 1.366915e-01	ci left: 2.728344e-03	ci right 3.132053e-03	k: 819	n:280000
Cons ci ratio: 2.420646e-01	ci left: 8.225199e-04	ci right 1.052298e-03	k: 261	n:280000
KS ci ratio: 2.459191e-02	ci left: 8.217245e-02	ci right 8.422190e-02	k: 23294	n:280000
PLCL1   280000 perm   116 sec   (2422 perm/sec)   p_kst 8.319286e-02   p_cons 9.321429e-04   p_joint 2.925000e-03

Joint ci ratio: 1.479829e-01	ci left: 2.235140e-03	ci right 2.595609e-03	k: 699	n:290000
Cons ci ratio: 2.411491e-01	ci left: 8.006350e-04	ci right 1.023326e-03	k: 263	n:290000
KS ci ratio: 2.411732e-02	ci left: 8.248532e-02	ci right 8.450233e-02	k: 24212	n:290000
PLCL1   290000 perm   121 sec   (2396 perm/sec)   p_kst 8.348966e-02   p_cons 9.068966e-04   p_joint 2.410345e-03

Joint ci ratio: 1.500439e-01	ci left: 2.099652e-03	ci right 2.443409e-03	k: 680	n:300000
Cons ci ratio: 2.358473e-01	ci left: 8.115578e-04	ci right 1.031600e-03	k: 275	n:300000
KS ci ratio: 2.371347e-02	ci left: 8.249255e-02	ci right 8.447550e-02	k: 25044	n:300000
PLCL1   300000 perm   127 sec   (2370 perm/sec)   p_kst 8.348000e-02   p_cons 9.166667e-04   p_joint 2.266667e-03

Joint ci ratio: 1.477830e-01	ci left: 2.097139e-03	ci right 2.434854e-03	k: 701	n:310000
Cons ci ratio: 2.341586e-01	ci left: 7.975214e-04	ci right 1.011986e-03	k: 279	n:310000
KS ci ratio: 2.331157e-02	ci left: 8.261510e-02	ci right 8.456688e-02	k: 25912	n:310000
PLCL1   310000 perm   132 sec   (2346 perm/sec)   p_kst 8.358710e-02   p_cons 9.000000e-04   p_joint 2.261290e-03

Joint ci ratio: 1.470553e-01	ci left: 2.052668e-03	ci right 2.381451e-03	k: 708	n:320000
Cons ci ratio: 2.285136e-01	ci left: 8.138145e-04	ci right 1.026641e-03	k: 293	n:320000
KS ci ratio: 2.294158e-02	ci left: 8.264943e-02	ci right 8.457062e-02	k: 26754	n:320000
PLCL1   320000 perm   138 sec   (2322 perm/sec)   p_kst 8.360625e-02   p_cons 9.156250e-04   p_joint 2.212500e-03

Joint ci ratio: 1.450245e-01	ci left: 2.048857e-03	ci right 2.372105e-03	k: 728	n:330000
Cons ci ratio: 2.250944e-01	ci left: 8.148768e-04	ci right 1.024350e-03	k: 302	n:330000
KS ci ratio: 2.259671e-02	ci left: 8.262764e-02	ci right 8.451908e-02	k: 27578	n:330000
PLCL1   330000 perm   144 sec   (2299 perm/sec)   p_kst 8.356970e-02   p_cons 9.151515e-04   p_joint 2.206061e-03

Joint ci ratio: 1.474824e-01	ci left: 1.920582e-03	ci right 2.229179e-03	k: 704	n:340000
Cons ci ratio: 2.218241e-01	ci left: 8.158989e-04	ci right 1.022172e-03	k: 311	n:340000
KS ci ratio: 2.226438e-02	ci left: 8.262489e-02	ci right 8.448809e-02	k: 28408	n:340000
PLCL1   340000 perm   149 sec   (2276 perm/sec)   p_kst 8.355294e-02   p_cons 9.147059e-04   p_joint 2.070588e-03

Joint ci ratio: 1.462448e-01	ci left: 1.898733e-03	ci right 2.201035e-03	k: 716	n:350000
Cons ci ratio: 2.197225e-01	ci left: 8.087821e-04	ci right 1.011057e-03	k: 317	n:350000
KS ci ratio: 2.193728e-02	ci left: 8.268504e-02	ci right 8.452186e-02	k: 29260	n:350000
PLCL1   350000 perm   155 sec   (2252 perm/sec)   p_kst 8.360000e-02   p_cons 9.057143e-04   p_joint 2.045714e-03

Joint ci ratio: 1.434688e-01	ci left: 1.920950e-03	ci right 2.220488e-03	k: 744	n:360000
Cons ci ratio: 2.153633e-01	ci left: 8.204603e-04	ci right 1.021046e-03	k: 330	n:360000
KS ci ratio: 2.159564e-02	ci left: 8.294382e-02	ci right 8.475733e-02	k: 30185	n:360000
PLCL1   360000 perm   161 sec   (2230 perm/sec)   p_kst 8.384722e-02   p_cons 9.166667e-04   p_joint 2.066667e-03

Joint ci ratio: 1.420470e-01	ci left: 1.908124e-03	ci right 2.202464e-03	k: 759	n:370000
Cons ci ratio: 2.121818e-01	ci left: 8.238660e-04	ci right 1.021922e-03	k: 340	n:370000
KS ci ratio: 2.131550e-02	ci left: 8.285799e-02	ci right 8.464584e-02	k: 30987	n:370000
PLCL1   370000 perm   168 sec   (2208 perm/sec)   p_kst 8.374865e-02   p_cons 9.189189e-04   p_joint 2.051351e-03

Joint ci ratio: 1.405759e-01	ci left: 1.898527e-03	ci right 2.188098e-03	k: 775	n:380000
Cons ci ratio: 2.097361e-01	ci left: 8.221256e-04	ci right 1.017193e-03	k: 348	n:380000
KS ci ratio: 2.103840e-02	ci left: 8.283182e-02	ci right 8.459559e-02	k: 31810	n:380000
PLCL1   380000 perm   174 sec   (2186 perm/sec)   p_kst 8.371053e-02   p_cons 9.157895e-04   p_joint 2.039474e-03

Joint ci ratio: 1.385373e-01	ci left: 1.906762e-03	ci right 2.193025e-03	k: 798	n:390000
Cons ci ratio: 2.073732e-01	ci left: 8.204870e-04	ci right 1.012694e-03	k: 356	n:390000
KS ci ratio: 2.077009e-02	ci left: 8.281990e-02	ci right 8.456065e-02	k: 32638	n:390000
PLCL1   390000 perm   180 sec   (2164 perm/sec)   p_kst 8.368718e-02   p_cons 9.128205e-04   p_joint 2.046154e-03

Joint ci ratio: 1.370031e-01	ci left: 1.902542e-03	ci right 2.184749e-03	k: 816	n:400000
Cons ci ratio: 2.056530e-01	ci left: 8.141988e-04	ci right 1.003151e-03	k: 362	n:400000
KS ci ratio: 2.050979e-02	ci left: 8.282364e-02	ci right 8.454240e-02	k: 33472	n:400000
PLCL1   400000 perm   187 sec   (2144 perm/sec)   p_kst 8.368000e-02   p_cons 9.050000e-04   p_joint 2.040000e-03

Joint ci ratio: 1.360916e-01	ci left: 1.882050e-03	ci right 2.159210e-03	k: 827	n:410000
Cons ci ratio: 2.031501e-01	ci left: 8.151681e-04	ci right 1.001757e-03	k: 371	n:410000
KS ci ratio: 2.026775e-02	ci left: 8.276178e-02	ci right 8.445875e-02	k: 34279	n:410000
PLCL1   410000 perm   193 sec   (2124 perm/sec)   p_kst 8.360732e-02   p_cons 9.048780e-04   p_joint 2.017073e-03

Joint ci ratio: 1.155368e-01	ci left: 2.575372e-03	ci right 2.893454e-03	k: 1147	n:420000
Cons ci ratio: 2.015321e-01	ci left: 8.093210e-04	ci right 9.929150e-04	k: 377	n:420000
KS ci ratio: 2.002504e-02	ci left: 8.277171e-02	ci right 8.444833e-02	k: 35115	n:420000
PLCL1   420000 perm   200 sec   (2104 perm/sec)   p_kst 8.360714e-02   p_cons 8.976190e-04   p_joint 2.730952e-03

Joint ci ratio: 1.067196e-01	ci left: 2.960935e-03	ci right 3.296979e-03	k: 1344	n:430000
Cons ci ratio: 1.991749e-01	ci left: 8.103799e-04	ci right 9.918028e-04	k: 386	n:430000
KS ci ratio: 1.978275e-02	ci left: 8.284380e-02	ci right 8.450135e-02	k: 35978	n:430000
PLCL1   430000 perm   206 sec   (2085 perm/sec)   p_kst 8.366977e-02   p_cons 8.976744e-04   p_joint 3.125581e-03

Joint ci ratio: 1.085185e-01	ci left: 2.796319e-03	ci right 3.119372e-03	k: 1300	n:440000
Cons ci ratio: 1.973981e-01	ci left: 8.070813e-04	ci right 9.859599e-04	k: 393	n:440000
KS ci ratio: 1.955135e-02	ci left: 8.289464e-02	ci right 8.453358e-02	k: 36833	n:440000
PLCL1   440000 perm   213 sec   (2065 perm/sec)   p_kst 8.371136e-02   p_cons 8.931818e-04   p_joint 2.954545e-03

Joint ci ratio: 1.073695e-01	ci left: 2.794721e-03	ci right 3.113954e-03	k: 1328	n:450000
Cons ci ratio: 1.954243e-01	ci left: 8.060497e-04	ci right 9.827007e-04	k: 401	n:450000
KS ci ratio: 1.933462e-02	ci left: 8.289022e-02	ci right 8.451070e-02	k: 37664	n:450000
PLCL1   450000 perm   220 sec   (2046 perm/sec)   p_kst 8.369778e-02   p_cons 8.911111e-04   p_joint 2.951111e-03

Joint ci ratio: 1.067703e-01	ci left: 2.765699e-03	ci right 3.079744e-03	k: 1343	n:460000
Cons ci ratio: 1.937451e-01	ci left: 8.030028e-04	ci right 9.772956e-04	k: 408	n:460000
KS ci ratio: 1.910868e-02	ci left: 8.301596e-02	ci right 8.461972e-02	k: 38555	n:460000
PLCL1   460000 perm   227 sec   (2028 perm/sec)   p_kst 8.381522e-02   p_cons 8.869565e-04   p_joint 2.919565e-03

Joint ci ratio: 1.058690e-01	ci left: 2.754489e-03	ci right 3.064455e-03	k: 1366	n:470000
Cons ci ratio: 1.921085e-01	ci left: 8.000917e-04	ci right 9.721144e-04	k: 415	n:470000
KS ci ratio: 1.891667e-02	ci left: 8.292460e-02	ci right 8.451033e-02	k: 39346	n:470000
PLCL1   470000 perm   234 sec   (2009 perm/sec)   p_kst 8.371489e-02   p_cons 8.829787e-04   p_joint 2.906383e-03

Joint ci ratio: 1.058722e-01	ci left: 2.697099e-03	ci right 3.000618e-03	k: 1366	n:480000
Cons ci ratio: 1.893957e-01	ci left: 8.072296e-04	ci right 9.780541e-04	k: 427	n:480000
KS ci ratio: 1.871024e-02	ci left: 8.300101e-02	ci right 8.457069e-02	k: 40216	n:480000
PLCL1   480000 perm   241 sec   (1991 perm/sec)   p_kst 8.378333e-02   p_cons 8.895833e-04   p_joint 2.845833e-03

Joint ci ratio: 1.050311e-01	ci left: 2.685769e-03	ci right 2.985463e-03	k: 1388	n:490000
Cons ci ratio: 1.876502e-01	ci left: 8.063115e-04	ci right 9.751900e-04	k: 435	n:490000
KS ci ratio: 1.852200e-02	ci left: 8.297887e-02	ci right 8.453218e-02	k: 41039	n:490000
PLCL1   490000 perm   248 sec   (1974 perm/sec)   p_kst 8.375306e-02   p_cons 8.877551e-04   p_joint 2.832653e-03

Joint ci ratio: 1.037317e-01	ci left: 2.700228e-03	ci right 2.997580e-03	k: 1423	n:500000
Cons ci ratio: 1.855344e-01	ci left: 8.092512e-04	ci right 9.766192e-04	k: 445	n:500000
KS ci ratio: 1.833550e-02	ci left: 8.298956e-02	ci right 8.452726e-02	k: 41878	n:500000
PLCL1   500000 perm   256 sec   (1957 perm/sec)   p_kst 8.375600e-02   p_cons 8.900000e-04   p_joint 2.846000e-03

Joint ci ratio: 1.053034e-01	ci left: 2.567072e-03	ci right 2.854309e-03	k: 1381	n:510000
Cons ci ratio: 1.838926e-01	ci left: 8.083445e-04	ci right 9.738807e-04	k: 453	n:510000
KS ci ratio: 1.815382e-02	ci left: 8.300577e-02	ci right 8.452837e-02	k: 42720	n:510000
PLCL1   510000 perm   263 sec   (1940 perm/sec)   p_kst 8.376471e-02   p_cons 8.882353e-04   p_joint 2.707843e-03

Joint ci ratio: 1.041045e-01	ci left: 2.577633e-03	ci right 2.862567e-03	k: 1413	n:520000
Cons ci ratio: 1.817042e-01	ci left: 8.129855e-04	ci right 9.772727e-04	k: 464	n:520000
KS ci ratio: 1.796979e-02	ci left: 8.308654e-02	ci right 8.459502e-02	k: 43596	n:520000
PLCL1   520000 perm   270 sec   (1924 perm/sec)   p_kst 8.383846e-02   p_cons 8.923077e-04   p_joint 2.717308e-03

Joint ci ratio: 1.035943e-01	ci left: 2.554726e-03	ci right 2.835660e-03	k: 1427	n:530000
Cons ci ratio: 1.811219e-01	ci left: 8.030491e-04	ci right 9.647513e-04	k: 467	n:530000
KS ci ratio: 1.779692e-02	ci left: 8.311549e-02	ci right 8.460982e-02	k: 44446	n:530000
PLCL1   530000 perm   278 sec   (1907 perm/sec)   p_kst 8.386038e-02   p_cons 8.811321e-04   p_joint 2.692453e-03

Joint ci ratio: 1.035969e-01	ci left: 2.507413e-03	ci right 2.783151e-03	k: 1427	n:540000
Cons ci ratio: 1.799724e-01	ci left: 7.987866e-04	ci right 9.584985e-04	k: 473	n:540000
KS ci ratio: 1.763511e-02	ci left: 8.308993e-02	ci right 8.457009e-02	k: 45267	n:540000
PLCL1   540000 perm   286 sec   (1891 perm/sec)   p_kst 8.382778e-02   p_cons 8.759259e-04   p_joint 2.642593e-03

Joint ci ratio: 1.056207e-01	ci left: 2.366202e-03	ci right 2.631809e-03	k: 1373	n:550000
Cons ci ratio: 1.781032e-01	ci left: 8.016303e-04	ci right 9.600669e-04	k: 483	n:550000
KS ci ratio: 1.746544e-02	ci left: 8.317222e-02	ci right 8.463944e-02	k: 46147	n:550000
PLCL1   550000 perm   293 sec   (1875 perm/sec)   p_kst 8.390364e-02   p_cons 8.781818e-04   p_joint 2.496364e-03

Joint ci ratio: 1.078490e-01	ci left: 2.226609e-03	ci right 2.482155e-03	k: 1317	n:560000
Cons ci ratio: 1.770099e-01	ci left: 7.975535e-04	ci right 9.541130e-04	k: 489	n:560000
KS ci ratio: 1.731061e-02	ci left: 8.316269e-02	ci right 8.461662e-02	k: 46977	n:560000
PLCL1   560000 perm   301 sec   (1859 perm/sec)   p_kst 8.388750e-02   p_cons 8.732143e-04   p_joint 2.351786e-03

Joint ci ratio: 1.085135e-01	ci left: 2.160231e-03	ci right 2.409783e-03	k: 1301	n:570000
Cons ci ratio: 1.747069e-01	ci left: 8.053647e-04	ci right 9.611837e-04	k: 502	n:570000
KS ci ratio: 1.715768e-02	ci left: 8.317278e-02	ci right 8.461391e-02	k: 47818	n:570000
PLCL1   570000 perm   309 sec   (1844 perm/sec)   p_kst 8.389123e-02   p_cons 8.807018e-04   p_joint 2.282456e-03

Joint ci ratio: 1.078124e-01	ci left: 2.151502e-03	ci right 2.398339e-03	k: 1318	n:580000
Cons ci ratio: 1.716610e-01	ci left: 8.211691e-04	ci right 9.769891e-04	k: 520	n:580000
KS ci ratio: 1.701179e-02	ci left: 8.315510e-02	ci right 8.458354e-02	k: 48643	n:580000
PLCL1   580000 perm   317 sec   (1829 perm/sec)   p_kst 8.386724e-02   p_cons 8.965517e-04   p_joint 2.272414e-03

Joint ci ratio: 1.081024e-01	ci left: 2.103489e-03	ci right 2.345508e-03	k: 1311	n:590000
Cons ci ratio: 1.701973e-01	ci left: 8.218526e-04	ci right 9.763362e-04	k: 529	n:590000
KS ci ratio: 1.686248e-02	ci left: 8.320222e-02	ci right 8.461881e-02	k: 49506	n:590000
PLCL1   590000 perm   325 sec   (1814 perm/sec)   p_kst 8.390847e-02   p_cons 8.966102e-04   p_joint 2.222034e-03

Joint ci ratio: 1.087711e-01	ci left: 2.042484e-03	ci right 2.279031e-03	k: 1295	n:600000
Cons ci ratio: 1.692424e-01	ci left: 8.177302e-04	ci right 9.704885e-04	k: 535	n:600000
KS ci ratio: 1.672665e-02	ci left: 8.315983e-02	ci right 8.456419e-02	k: 50316	n:600000
PLCL1   600000 perm   333 sec   (1799 perm/sec)   p_kst 8.386000e-02   p_cons 8.916667e-04   p_joint 2.158333e-03

Joint ci ratio: 1.090686e-01	ci left: 1.997835e-03	ci right 2.229884e-03	k: 1288	n:610000
Cons ci ratio: 1.667706e-01	ci left: 8.294519e-04	ci right 9.819096e-04	k: 551	n:610000
KS ci ratio: 1.658113e-02	ci left: 8.323810e-02	ci right 8.463143e-02	k: 51199	n:610000
PLCL1   610000 perm   342 sec   (1785 perm/sec)   p_kst 8.393279e-02   p_cons 9.032787e-04   p_joint 2.111475e-03

Joint ci ratio: 1.106737e-01	ci left: 1.907570e-03	ci right 2.132608e-03	k: 1251	n:620000
Cons ci ratio: 1.652801e-01	ci left: 8.315325e-04	ci right 9.828709e-04	k: 561	n:620000
KS ci ratio: 1.643710e-02	ci left: 8.333478e-02	ci right 8.471750e-02	k: 52095	n:620000
PLCL1   620000 perm   350 sec   (1772 perm/sec)   p_kst 8.402419e-02   p_cons 9.048387e-04   p_joint 2.017742e-03

Joint ci ratio: 1.102353e-01	ci left: 1.892725e-03	ci right 2.115069e-03	k: 1261	n:630000
Cons ci ratio: 1.638289e-01	ci left: 8.335530e-04	ci right 9.837958e-04	k: 571	n:630000
KS ci ratio: 1.630617e-02	ci left: 8.333988e-02	ci right 8.471157e-02	k: 52935	n:630000
PLCL1   630000 perm   359 sec   (1757 perm/sec)   p_kst 8.402381e-02   p_cons 9.063492e-04   p_joint 2.001587e-03

Joint ci ratio: 1.093720e-01	ci left: 1.893543e-03	ci right 2.114129e-03	k: 1281	n:640000
Cons ci ratio: 1.626952e-01	ci left: 8.325180e-04	ci right 9.814343e-04	k: 579	n:640000
KS ci ratio: 1.617750e-02	ci left: 8.335265e-02	ci right 8.471362e-02	k: 53780	n:640000
PLCL1   640000 perm   367 sec   (1744 perm/sec)   p_kst 8.403125e-02   p_cons 9.046875e-04   p_joint 2.001562e-03

Joint ci ratio: 1.092457e-01	ci left: 1.868899e-03	ci right 2.086347e-03	k: 1284	n:650000
Cons ci ratio: 1.615848e-01	ci left: 8.315183e-04	ci right 9.791420e-04	k: 587	n:650000
KS ci ratio: 1.605872e-02	ci left: 8.329915e-02	ci right 8.464917e-02	k: 54582	n:650000
PLCL1   650000 perm   376 sec   (1730 perm/sec)   p_kst 8.397231e-02   p_cons 9.030769e-04   p_joint 1.975385e-03

Joint ci ratio: 1.086559e-01	ci left: 1.861216e-03	ci right 2.076526e-03	k: 1298	n:660000
Cons ci ratio: 1.604968e-01	ci left: 8.305522e-04	ci right 9.769159e-04	k: 595	n:660000
KS ci ratio: 1.592559e-02	ci left: 8.341036e-02	ci right 8.475087e-02	k: 55492	n:660000
PLCL1   660000 perm   384 sec   (1717 perm/sec)   p_kst 8.407879e-02   p_cons 9.015152e-04   p_joint 1.966667e-03

Joint ci ratio: 1.077471e-01	ci left: 1.865384e-03	ci right 2.079257e-03	k: 1320	n:670000
Cons ci ratio: 1.596954e-01	ci left: 8.267522e-04	ci right 9.716489e-04	k: 601	n:670000
KS ci ratio: 1.580626e-02	ci left: 8.341567e-02	ci right 8.474613e-02	k: 56333	n:670000
PLCL1   670000 perm   393 sec   (1705 perm/sec)   p_kst 8.407910e-02   p_cons 8.970149e-04   p_joint 1.970149e-03

Joint ci ratio: 1.105952e-01	ci left: 1.742106e-03	ci right 1.947469e-03	k: 1253	n:680000
Cons ci ratio: 1.587752e-01	ci left: 8.244780e-04	ci right 9.680641e-04	k: 608	n:680000
KS ci ratio: 1.568763e-02	ci left: 8.343992e-02	ci right 8.476069e-02	k: 57187	n:680000
PLCL1   680000 perm   402 sec   (1692 perm/sec)   p_kst 8.409853e-02   p_cons 8.941176e-04   p_joint 1.842647e-03

Joint ci ratio: 1.095514e-01	ci left: 1.750684e-03	ci right 1.954984e-03	k: 1277	n:690000
Cons ci ratio: 1.567289e-01	ci left: 8.348024e-04	ci right 9.781367e-04	k: 624	n:690000
KS ci ratio: 1.558146e-02	ci left: 8.336674e-02	ci right 8.467734e-02	k: 57974	n:690000
PLCL1   690000 perm   411 sec   (1680 perm/sec)   p_kst 8.402029e-02   p_cons 9.043478e-04   p_joint 1.850725e-03

Joint ci ratio: 1.087880e-01	ci left: 1.750686e-03	ci right 1.953472e-03	k: 1295	n:700000
Cons ci ratio: 1.562303e-01	ci left: 8.283670e-04	ci right 9.701015e-04	k: 628	n:700000
KS ci ratio: 1.547453e-02	ci left: 8.332415e-02	ci right 8.462501e-02	k: 58781	n:700000
PLCL1   700000 perm   420 sec   (1667 perm/sec)   p_kst 8.397286e-02   p_cons 8.971429e-04   p_joint 1.850000e-03

Joint ci ratio: 1.082883e-01	ci left: 1.742471e-03	ci right 1.943319e-03	k: 1307	n:710000
Cons ci ratio: 1.553684e-01	ci left: 8.261745e-04	ci right 9.666814e-04	k: 635	n:710000
KS ci ratio: 1.537217e-02	ci left: 8.325893e-02	ci right 8.455010e-02	k: 59571	n:710000
PLCL1   710000 perm   429 sec   (1655 perm/sec)   p_kst 8.390282e-02   p_cons 8.943662e-04   p_joint 1.840845e-03

Joint ci ratio: 1.078364e-01	ci left: 1.733134e-03	ci right 1.932019e-03	k: 1318	n:720000
Cons ci ratio: 1.545206e-01	ci left: 8.240451e-04	ci right 9.633543e-04	k: 642	n:720000
KS ci ratio: 1.527278e-02	ci left: 8.318587e-02	ci right 8.446748e-02	k: 60354	n:720000
PLCL1   720000 perm   438 sec   (1643 perm/sec)   p_kst 8.382500e-02   p_cons 8.916667e-04   p_joint 1.830556e-03

Joint ci ratio: 1.067884e-01	ci left: 1.744054e-03	ci right 1.942125e-03	k: 1344	n:730000
Cons ci ratio: 1.532153e-01	ci left: 8.272453e-04	ci right 9.658057e-04	k: 653	n:730000
KS ci ratio: 1.516501e-02	ci left: 8.321858e-02	ci right 8.449158e-02	k: 61213	n:730000
PLCL1   730000 perm   447 sec   (1631 perm/sec)   p_kst 8.385342e-02   p_cons 8.945205e-04   p_joint 1.841096e-03

Joint ci ratio: 1.075535e-01	ci left: 1.695496e-03	ci right 1.889519e-03	k: 1325	n:740000
Cons ci ratio: 1.517145e-01	ci left: 8.329638e-04	ci right 9.709913e-04	k: 666	n:740000
KS ci ratio: 1.506770e-02	ci left: 8.316694e-02	ci right 8.443091e-02	k: 62010	n:740000
PLCL1   740000 perm   457 sec   (1620 perm/sec)   p_kst 8.379730e-02   p_cons 9.000000e-04   p_joint 1.790541e-03

Joint ci ratio: 9.639745e-02	ci left: 2.093924e-03	ci right 2.307284e-03	k: 1649	n:750000
Cons ci ratio: 1.503676e-01	ci left: 8.372531e-04	ci right 9.746488e-04	k: 678	n:750000
KS ci ratio: 1.496756e-02	ci left: 8.316454e-02	ci right 8.442001e-02	k: 62843	n:750000
PLCL1   750000 perm   466 sec   (1608 perm/sec)   p_kst 8.379067e-02   p_cons 9.040000e-04   p_joint 2.198667e-03

Joint ci ratio: 9.651617e-02	ci left: 2.061234e-03	ci right 2.271537e-03	k: 1645	n:760000
Cons ci ratio: 1.494896e-01	ci left: 8.363680e-04	ci right 9.727455e-04	k: 686	n:760000
KS ci ratio: 1.487245e-02	ci left: 8.313076e-02	ci right 8.437767e-02	k: 63652	n:760000
PLCL1   760000 perm   476 sec   (1597 perm/sec)   p_kst 8.375263e-02   p_cons 9.026316e-04   p_joint 2.164474e-03

Joint ci ratio: 9.599295e-02	ci left: 2.057279e-03	ci right 2.265976e-03	k: 1663	n:770000
Cons ci ratio: 1.490568e-01	ci left: 8.305067e-04	ci right 9.655013e-04	k: 690	n:770000
KS ci ratio: 1.477738e-02	ci left: 8.311601e-02	ci right 8.435466e-02	k: 64475	n:770000
PLCL1   770000 perm   485 sec   (1586 perm/sec)   p_kst 8.373377e-02   p_cons 8.961039e-04   p_joint 2.159740e-03

Joint ci ratio: 9.536459e-02	ci left: 2.058433e-03	ci right 2.265804e-03	k: 1685	n:780000
Cons ci ratio: 1.480955e-01	ci left: 8.309687e-04	ci right 9.650902e-04	k: 699	n:780000
KS ci ratio: 1.468165e-02	ci left: 8.312721e-02	ci right 8.435794e-02	k: 65318	n:780000
PLCL1   780000 perm   495 sec   (1575 perm/sec)   p_kst 8.374103e-02   p_cons 8.961538e-04   p_joint 2.160256e-03

Joint ci ratio: 1.115036e-01	ci left: 1.474910e-03	ci right 1.650296e-03	k: 1233	n:790000
Cons ci ratio: 1.725119e-01	ci left: 5.968210e-04	ci right 7.106896e-04	k: 515	n:790000
KS ci ratio: 1.458031e-02	ci left: 8.321637e-02	ci right 8.443984e-02	k: 66223	n:790000
PLCL1   790000 perm   505 sec   (1565 perm/sec)   p_kst 8.382658e-02   p_cons 6.518987e-04   p_joint 1.560759e-03

Joint ci ratio: 1.109210e-01	ci left: 1.472272e-03	ci right 1.646370e-03	k: 1246	n:800000
Cons ci ratio: 1.713535e-01	ci left: 5.977343e-04	ci right 7.109321e-04	k: 522	n:800000
KS ci ratio: 1.448751e-02	ci left: 8.323481e-02	ci right 8.445070e-02	k: 67073	n:800000
PLCL1   800000 perm   515 sec   (1554 perm/sec)   p_kst 8.384125e-02   p_cons 6.525000e-04   p_joint 1.557500e-03

Joint ci ratio: 1.101289e-01	ci left: 1.475703e-03	ci right 1.648880e-03	k: 1264	n:810000
Cons ci ratio: 1.702181e-01	ci left: 5.986275e-04	ci right 7.111661e-04	k: 529	n:810000
KS ci ratio: 1.439959e-02	ci left: 8.321960e-02	ci right 8.442783e-02	k: 67896	n:810000
PLCL1   810000 perm   525 sec   (1544 perm/sec)   p_kst 8.382222e-02   p_cons 6.530864e-04   p_joint 1.560494e-03

Joint ci ratio: 1.101299e-01	ci left: 1.457706e-03	ci right 1.628773e-03	k: 1264	n:820000
Cons ci ratio: 1.691050e-01	ci left: 5.995012e-04	ci right 7.113921e-04	k: 536	n:820000
KS ci ratio: 1.430927e-02	ci left: 8.324732e-02	ci right 8.444831e-02	k: 68754	n:820000
PLCL1   820000 perm   535 sec   (1534 perm/sec)   p_kst 8.384634e-02   p_cons 6.536585e-04   p_joint 1.541463e-03

Joint ci ratio: 1.100438e-01	ci left: 1.442486e-03	ci right 1.611626e-03	k: 1266	n:830000
Cons ci ratio: 1.684789e-01	ci left: 5.968940e-04	ci right 7.078439e-04	k: 540	n:830000
KS ci ratio: 1.422599e-02	ci left: 8.321675e-02	ci right 8.441025e-02	k: 69564	n:830000
PLCL1   830000 perm   545 sec   (1524 perm/sec)   p_kst 8.381205e-02   p_cons 6.506024e-04   p_joint 1.525301e-03

Joint ci ratio: 1.164828e-01	ci left: 1.267985e-03	ci right 1.425962e-03	k: 1130	n:840000
Cons ci ratio: 1.677059e-01	ci left: 5.954900e-04	ci right 7.056198e-04	k: 545	n:840000
KS ci ratio: 1.414546e-02	ci left: 8.317269e-02	ci right 8.435875e-02	k: 70362	n:840000
PLCL1   840000 perm   555 sec   (1513 perm/sec)   p_kst 8.376429e-02   p_cons 6.488095e-04   p_joint 1.345238e-03

Joint ci ratio: 1.160224e-01	ci left: 1.263348e-03	ci right 1.420082e-03	k: 1139	n:850000
Cons ci ratio: 1.666410e-01	ci left: 5.963750e-04	ci right 7.058979e-04	k: 552	n:850000
KS ci ratio: 1.406315e-02	ci left: 8.316369e-02	ci right 8.434267e-02	k: 71189	n:850000
PLCL1   850000 perm   565 sec   (1503 perm/sec)   p_kst 8.375176e-02   p_cons 6.494118e-04   p_joint 1.340000e-03

Joint ci ratio: 1.164847e-01	ci left: 1.238496e-03	ci right 1.392801e-03	k: 1130	n:860000
Cons ci ratio: 1.653011e-01	ci left: 5.994709e-04	ci right 7.085891e-04	k: 561	n:860000
KS ci ratio: 1.397941e-02	ci left: 8.318622e-02	ci right 8.435844e-02	k: 72043	n:860000
PLCL1   860000 perm   576 sec   (1493 perm/sec)   p_kst 8.377093e-02   p_cons 6.523256e-04   p_joint 1.313953e-03

Joint ci ratio: 1.214229e-01	ci left: 1.123885e-03	ci right 1.270273e-03	k: 1040	n:870000
Cons ci ratio: 1.645708e-01	ci left: 5.980903e-04	ci right 7.064285e-04	k: 566	n:870000
KS ci ratio: 1.390172e-02	ci left: 8.315784e-02	ci right 8.432309e-02	k: 72853	n:870000
PLCL1   870000 perm   586 sec   (1484 perm/sec)   p_kst 8.373908e-02   p_cons 6.505747e-04   p_joint 1.195402e-03

Joint ci ratio: 1.206717e-01	ci left: 1.125439e-03	ci right 1.271058e-03	k: 1053	n:880000
Cons ci ratio: 1.638501e-01	ci left: 5.967422e-04	ci right 7.043161e-04	k: 571	n:880000
KS ci ratio: 1.382756e-02	ci left: 8.310520e-02	ci right 8.426345e-02	k: 73641	n:880000
PLCL1   880000 perm   597 sec   (1474 perm/sec)   p_kst 8.368295e-02   p_cons 6.488636e-04   p_joint 1.196591e-03

Joint ci ratio: 1.207873e-01	ci left: 1.110614e-03	ci right 1.254462e-03	k: 1051	n:890000
Cons ci ratio: 1.627160e-01	ci left: 5.986587e-04	ci right 7.057581e-04	k: 579	n:890000
KS ci ratio: 1.375086e-02	ci left: 8.309520e-02	ci right 8.424684e-02	k: 74466	n:890000
PLCL1   890000 perm   608 sec   (1464 perm/sec)   p_kst 8.366966e-02   p_cons 6.505618e-04   p_joint 1.180899e-03

Joint ci ratio: 1.201042e-01	ci left: 1.111205e-03	ci right 1.254258e-03	k: 1063	n:900000
Cons ci ratio: 1.618809e-01	ci left: 5.984028e-04	ci right 7.048536e-04	k: 585	n:900000
KS ci ratio: 1.367739e-02	ci left: 8.306329e-02	ci right 8.420829e-02	k: 75271	n:900000
PLCL1   900000 perm   618 sec   (1455 perm/sec)   p_kst 8.363444e-02   p_cons 6.500000e-04   p_joint 1.181111e-03

Joint ci ratio: 1.195996e-01	ci left: 1.108588e-03	ci right 1.250662e-03	k: 1072	n:910000
Cons ci ratio: 1.617434e-01	ci left: 5.928812e-04	ci right 6.982515e-04	k: 586	n:910000
KS ci ratio: 1.360724e-02	ci left: 8.300799e-02	ci right 8.414631e-02	k: 76054	n:910000
PLCL1   910000 perm   629 sec   (1446 perm/sec)   p_kst 8.357582e-02   p_cons 6.439560e-04   p_joint 1.178022e-03

Joint ci ratio: 1.185541e-01	ci left: 1.116575e-03	ci right 1.258335e-03	k: 1091	n:920000
Cons ci ratio: 1.609231e-01	ci left: 5.926953e-04	ci right 6.974466e-04	k: 592	n:920000
KS ci ratio: 1.353124e-02	ci left: 8.303193e-02	ci right 8.416417e-02	k: 76909	n:920000
PLCL1   920000 perm   640 sec   (1437 perm/sec)   p_kst 8.359674e-02   p_cons 6.434783e-04   p_joint 1.185870e-03

Joint ci ratio: 1.205611e-01	ci left: 1.067015e-03	ci right 1.204939e-03	k: 1055	n:930000
Cons ci ratio: 1.603833e-01	ci left: 5.904503e-04	ci right 6.944211e-04	k: 596	n:930000
KS ci ratio: 1.345980e-02	ci left: 8.301785e-02	ci right 8.414388e-02	k: 77729	n:930000
PLCL1   930000 perm   651 sec   (1428 perm/sec)   p_kst 8.357957e-02   p_cons 6.408602e-04   p_joint 1.134409e-03

Joint ci ratio: 1.200507e-01	ci left: 1.064950e-03	ci right 1.201983e-03	k: 1064	n:940000
Cons ci ratio: 1.601157e-01	ci left: 5.862112e-04	ci right 6.892467e-04	k: 598	n:940000
KS ci ratio: 1.338949e-02	ci left: 8.300409e-02	ci right 8.412401e-02	k: 78549	n:940000
PLCL1   940000 perm   662 sec   (1419 perm/sec)   p_kst 8.356277e-02   p_cons 6.361702e-04   p_joint 1.131915e-03

Joint ci ratio: 1.194912e-01	ci left: 1.063951e-03	ci right 1.200172e-03	k: 1074	n:950000
Cons ci ratio: 1.594517e-01	ci left: 5.850932e-04	ci right 6.874649e-04	k: 603	n:950000
KS ci ratio: 1.332008e-02	ci left: 8.299274e-02	ci right 8.410665e-02	k: 79371	n:950000
PLCL1   950000 perm   674 sec   (1410 perm/sec)   p_kst 8.354842e-02   p_cons 6.347368e-04   p_joint 1.130526e-03

Joint ci ratio: 1.198271e-01	ci left: 1.046805e-03	ci right 1.181234e-03	k: 1068	n:960000
Cons ci ratio: 1.580189e-01	ci left: 5.900018e-04	ci right 6.922168e-04	k: 614	n:960000
KS ci ratio: 1.325300e-02	ci left: 8.296709e-02	ci right 8.407501e-02	k: 80179	n:960000
PLCL1   960000 perm   685 sec   (1401 perm/sec)   p_kst 8.351979e-02   p_cons 6.395833e-04   p_joint 1.112500e-03

Joint ci ratio: 1.191601e-01	ci left: 1.048015e-03	ci right 1.181797e-03	k: 1080	n:970000
Cons ci ratio: 1.576352e-01	ci left: 5.868899e-04	ci right 6.882955e-04	k: 617	n:970000
KS ci ratio: 1.318692e-02	ci left: 8.294199e-02	ci right 8.404401e-02	k: 80987	n:970000
PLCL1   970000 perm   696 sec   (1393 perm/sec)   p_kst 8.349175e-02   p_cons 6.360825e-04   p_joint 1.113402e-03

Joint ci ratio: 1.184499e-01	ci left: 1.050192e-03	ci right 1.183397e-03	k: 1093	n:980000
Cons ci ratio: 1.566246e-01	ci left: 5.887435e-04	ci right 6.897560e-04	k: 625	n:980000
KS ci ratio: 1.311929e-02	ci left: 8.294691e-02	ci right 8.404330e-02	k: 81824	n:980000
PLCL1   980000 perm   708 sec   (1384 perm/sec)   p_kst 8.349388e-02   p_cons 6.377551e-04   p_joint 1.115306e-03

Joint ci ratio: 1.176459e-01	ci left: 1.054288e-03	ci right 1.187042e-03	k: 1108	n:990000
Cons ci ratio: 1.558794e-01	ci left: 5.886203e-04	ci right 6.890862e-04	k: 631	n:990000
KS ci ratio: 1.305605e-02	ci left: 8.291248e-02	ci right 8.400309e-02	k: 82622	n:990000
PLCL1   990000 perm   719 sec   (1376 perm/sec)   p_kst 8.345657e-02   p_cons 6.373737e-04   p_joint 1.119192e-03

Joint ci ratio: 1.170667e-01	ci left: 1.054422e-03	ci right 1.186495e-03	k: 1119	n:1000000
Cons ci ratio: 1.549019e-01	ci left: 5.904230e-04	ci right 6.905061e-04	k: 639	n:1000000
KS ci ratio: 1.299159e-02	ci left: 8.290367e-02	ci right 8.398874e-02	k: 83445	n:1000000
PLCL1   1000000 perm   731 sec   (1368 perm/sec)   p_kst 8.344500e-02   p_cons 6.390000e-04   p_joint 1.119000e-03

Joint ci ratio: 1.165993e-01	ci left: 1.052633e-03	ci right 1.183919e-03	k: 1128	n:1010000
Cons ci ratio: 1.544203e-01	ci left: 5.883844e-04	ci right 6.877830e-04	k: 643	n:1010000
KS ci ratio: 1.292874e-02	ci left: 8.288715e-02	ci right 8.396672e-02	k: 84260	n:1010000
PLCL1   1010000 perm   743 sec   (1360 perm/sec)   p_kst 8.342574e-02   p_cons 6.366337e-04   p_joint 1.116832e-03

Joint ci ratio: 1.159337e-01	ci left: 1.054687e-03	ci right 1.185427e-03	k: 1141	n:1020000
Cons ci ratio: 1.534699e-01	ci left: 5.901569e-04	ci right 6.891850e-04	k: 651	n:1020000
KS ci ratio: 1.286234e-02	ci left: 8.292376e-02	ci right 8.399822e-02	k: 85129	n:1020000
PLCL1   1020000 perm   754 sec   (1352 perm/sec)   p_kst 8.345980e-02   p_cons 6.382353e-04   p_joint 1.118627e-03

Joint ci ratio: 1.152293e-01	ci left: 1.057647e-03	ci right 1.187903e-03	k: 1155	n:1030000
Cons ci ratio: 1.528849e-01	ci left: 5.890955e-04	ci right 6.875342e-04	k: 656	n:1030000
KS ci ratio: 1.280013e-02	ci left: 8.292191e-02	ci right 8.399111e-02	k: 85959	n:1030000
PLCL1   1030000 perm   766 sec   (1345 perm/sec)   p_kst 8.345534e-02   p_cons 6.368932e-04   p_joint 1.121359e-03

Joint ci ratio: 1.148823e-01	ci left: 1.054014e-03	ci right 1.183405e-03	k: 1162	n:1040000
Cons ci ratio: 1.525373e-01	ci left: 5.862055e-04	ci right 6.839181e-04	k: 659	n:1040000
KS ci ratio: 1.273392e-02	ci left: 8.297860e-02	ci right 8.404295e-02	k: 86850	n:1040000
PLCL1   1040000 perm   778 sec   (1336 perm/sec)   p_kst 8.350962e-02   p_cons 6.336538e-04   p_joint 1.117308e-03

Joint ci ratio: 1.143428e-01	ci left: 1.054152e-03	ci right 1.182911e-03	k: 1173	n:1050000
Cons ci ratio: 1.519629e-01	ci left: 5.852030e-04	ci right 6.823478e-04	k: 664	n:1050000
KS ci ratio: 1.267141e-02	ci left: 8.300193e-02	ci right 8.406132e-02	k: 87707	n:1050000
PLCL1   1050000 perm   790 sec   (1329 perm/sec)   p_kst 8.353048e-02   p_cons 6.323810e-04   p_joint 1.117143e-03

Joint ci ratio: 1.136669e-01	ci left: 1.057038e-03	ci right 1.185336e-03	k: 1187	n:1060000
Cons ci ratio: 1.511693e-01	ci left: 5.860356e-04	ci right 6.827646e-04	k: 671	n:1060000
KS ci ratio: 1.261075e-02	ci left: 8.301355e-02	ci right 8.406798e-02	k: 88552	n:1060000
PLCL1   1060000 perm   802 sec   (1321 perm/sec)   p_kst 8.353962e-02   p_cons 6.330189e-04   p_joint 1.119811e-03

Joint ci ratio: 1.142953e-01	ci left: 1.035355e-03	ci right 1.161763e-03	k: 1174	n:1070000
Cons ci ratio: 1.502773e-01	ci left: 5.877533e-04	ci right 6.841420e-04	k: 679	n:1070000
KS ci ratio: 1.254980e-02	ci left: 8.303894e-02	ci right 8.408855e-02	k: 89412	n:1070000
PLCL1   1070000 perm   815 sec   (1314 perm/sec)   p_kst 8.356262e-02   p_cons 6.345794e-04   p_joint 1.097196e-03

Joint ci ratio: 1.138121e-01	ci left: 1.034764e-03	ci right 1.160529e-03	k: 1184	n:1080000
Cons ci ratio: 1.499471e-01	ci left: 5.849846e-04	ci right 6.806894e-04	k: 682	n:1080000
KS ci ratio: 1.249191e-02	ci left: 8.303709e-02	ci right 8.408181e-02	k: 90243	n:1080000
PLCL1   1080000 perm   827 sec   (1306 perm/sec)   p_kst 8.355833e-02   p_cons 6.314815e-04   p_joint 1.096296e-03

Joint ci ratio: 1.003766e-01	ci left: 1.327098e-03	ci right 1.468233e-03	k: 1522	n:1090000
Cons ci ratio: 1.488611e-01	ci left: 5.884492e-04	ci right 6.839615e-04	k: 692	n:1090000
KS ci ratio: 1.243281e-02	ci left: 8.305999e-02	ci right 8.410002e-02	k: 91101	n:1090000
PLCL1   1090000 perm   839 sec   (1299 perm/sec)   p_kst 8.357890e-02   p_cons 6.348624e-04   p_joint 1.396330e-03

Joint ci ratio: 1.003113e-01	ci left: 1.316806e-03	ci right 1.456750e-03	k: 1524	n:1100000
Cons ci ratio: 1.485401e-01	ci left: 5.857254e-04	ci right 6.805724e-04	k: 695	n:1100000
KS ci ratio: 1.237703e-02	ci left: 8.305167e-02	ci right 8.408689e-02	k: 91925	n:1100000
PLCL1   1100000 perm   852 sec   (1291 perm/sec)   p_kst 8.356818e-02   p_cons 6.318182e-04   p_joint 1.385455e-03

Joint ci ratio: 9.988646e-02	ci left: 1.316361e-03	ci right 1.455631e-03	k: 1537	n:1110000
Cons ci ratio: 1.481153e-01	ci left: 5.839184e-04	ci right 6.781785e-04	k: 699	n:1110000
KS ci ratio: 1.232316e-02	ci left: 8.302913e-02	ci right 8.405953e-02	k: 92733	n:1110000
PLCL1   1110000 perm   865 sec   (1284 perm/sec)   p_kst 8.354324e-02   p_cons 6.297297e-04   p_joint 1.384685e-03

Joint ci ratio: 9.946701e-02	ci left: 1.315926e-03	ci right 1.454530e-03	k: 1550	n:1120000
Cons ci ratio: 1.476941e-01	ci left: 5.821440e-04	ci right 6.758268e-04	k: 703	n:1120000
KS ci ratio: 1.226470e-02	ci left: 8.307289e-02	ci right 8.409891e-02	k: 93615	n:1120000
PLCL1   1120000 perm   877 sec   (1277 perm/sec)   p_kst 8.358482e-02   p_cons 6.276786e-04   p_joint 1.383929e-03

Joint ci ratio: 1.003790e-01	ci left: 1.280120e-03	ci right 1.416262e-03	k: 1522	n:1130000
Cons ci ratio: 1.469652e-01	ci left: 5.829587e-04	ci right 6.762689e-04	k: 710	n:1130000
KS ci ratio: 1.220719e-02	ci left: 8.311412e-02	ci right 8.413580e-02	k: 94495	n:1130000
PLCL1   1130000 perm   890 sec   (1270 perm/sec)   p_kst 8.362389e-02   p_cons 6.283186e-04   p_joint 1.346903e-03

Joint ci ratio: 9.985578e-02	ci left: 1.282575e-03	ci right 1.418225e-03	k: 1538	n:1140000
Cons ci ratio: 1.459422e-01	ci left: 5.862956e-04	ci right 6.794298e-04	k: 720	n:1140000
KS ci ratio: 1.215209e-02	ci left: 8.313452e-02	ci right 8.415181e-02	k: 95352	n:1140000
PLCL1   1140000 perm   903 sec   (1263 perm/sec)   p_kst 8.364211e-02   p_cons 6.315789e-04   p_joint 1.349123e-03

Joint ci ratio: 9.950093e-02	ci left: 1.280748e-03	ci right 1.415696e-03	k: 1549	n:1150000
Cons ci ratio: 1.456397e-01	ci left: 5.837108e-04	ci right 6.762256e-04	k: 723	n:1150000
KS ci ratio: 1.209938e-02	ci left: 8.313376e-02	ci right 8.414660e-02	k: 96185	n:1150000
PLCL1   1150000 perm   916 sec   (1256 perm/sec)   p_kst 8.363913e-02   p_cons 6.286957e-04   p_joint 1.346957e-03

Joint ci ratio: 9.914984e-02	ci left: 1.278955e-03	ci right 1.413210e-03	k: 1560	n:1160000
Cons ci ratio: 1.451395e-01	ci left: 5.828324e-04	ci right 6.748631e-04	k: 728	n:1160000
KS ci ratio: 1.204768e-02	ci left: 8.312873e-02	ci right 8.413715e-02	k: 97013	n:1160000
PLCL1   1160000 perm   929 sec   (1249 perm/sec)   p_kst 8.363190e-02   p_cons 6.275862e-04   p_joint 1.344828e-03

Joint ci ratio: 1.038896e-01	ci left: 1.152231e-03	ci right 1.279319e-03	k: 1421	n:1170000
Cons ci ratio: 1.446444e-01	ci left: 5.819695e-04	ci right 6.735234e-04	k: 733	n:1170000
KS ci ratio: 1.199718e-02	ci left: 8.311697e-02	ci right 8.412099e-02	k: 97833	n:1170000
PLCL1   1170000 perm   942 sec   (1242 perm/sec)   p_kst 8.361795e-02   p_cons 6.264957e-04   p_joint 1.214530e-03

Joint ci ratio: 1.034540e-01	ci left: 1.152372e-03	ci right 1.278910e-03	k: 1433	n:1180000
Cons ci ratio: 1.440568e-01	ci left: 5.819386e-04	ci right 6.730838e-04	k: 739	n:1180000
KS ci ratio: 1.195120e-02	ci left: 8.305556e-02	ci right 8.405496e-02	k: 98594	n:1180000
PLCL1   1180000 perm   955 sec   (1236 perm/sec)   p_kst 8.355424e-02   p_cons 6.262712e-04   p_joint 1.214407e-03

Joint ci ratio: 1.030238e-01	ci left: 1.152512e-03	ci right 1.278507e-03	k: 1445	n:1190000
Cons ci ratio: 1.435727e-01	ci left: 5.810989e-04	ci right 6.717805e-04	k: 744	n:1190000
KS ci ratio: 1.190125e-02	ci left: 8.305301e-02	ci right 8.404818e-02	k: 99424	n:1190000
PLCL1   1190000 perm   968 sec   (1229 perm/sec)   p_kst 8.354958e-02   p_cons 6.252101e-04   p_joint 1.214286e-03

Joint ci ratio: 1.025638e-01	ci left: 1.153462e-03	ci right 1.278965e-03	k: 1458	n:1200000
Cons ci ratio: 1.428079e-01	ci left: 5.826842e-04	ci right 6.730876e-04	k: 752	n:1200000
KS ci ratio: 1.185294e-02	ci left: 8.303721e-02	ci right 8.402813e-02	k: 100238	n:1200000
PLCL1   1200000 perm   981 sec   (1223 perm/sec)   p_kst 8.353167e-02   p_cons 6.266667e-04   p_joint 1.215000e-03

Joint ci ratio: 1.020405e-01	ci left: 1.156009e-03	ci right 1.281109e-03	k: 1473	n:1210000
Cons ci ratio: 1.418687e-01	ci left: 5.858389e-04	ci right 6.760834e-04	k: 762	n:1210000
KS ci ratio: 1.180337e-02	ci left: 8.304559e-02	ci right 8.403244e-02	k: 101081	n:1210000
PLCL1   1210000 perm   995 sec   (1216 perm/sec)   p_kst 8.353802e-02   p_cons 6.297521e-04   p_joint 1.217355e-03

Joint ci ratio: 1.018337e-01	ci left: 1.151326e-03	ci right 1.275651e-03	k: 1479	n:1220000
Cons ci ratio: 1.407658e-01	ci left: 5.905253e-04	ci right 6.807252e-04	k: 774	n:1220000
KS ci ratio: 1.175480e-02	ci left: 8.304894e-02	ci right 8.403173e-02	k: 101918	n:1220000
PLCL1   1220000 perm   1008 sec   (1210 perm/sec)   p_kst 8.353934e-02   p_cons 6.344262e-04   p_joint 1.212295e-03

Joint ci ratio: 1.018342e-01	ci left: 1.141966e-03	ci right 1.265280e-03	k: 1479	n:1230000
Cons ci ratio: 1.396881e-01	ci left: 5.951382e-04	ci right 6.852889e-04	k: 786	n:1230000
KS ci ratio: 1.170862e-02	ci left: 8.302872e-02	ci right 8.400739e-02	k: 102726	n:1230000
PLCL1   1230000 perm   1022 sec   (1204 perm/sec)   p_kst 8.351707e-02   p_cons 6.390244e-04   p_joint 1.202439e-03

Joint ci ratio: 1.013898e-01	ci left: 1.142974e-03	ci right 1.265827e-03	k: 1492	n:1240000
Cons ci ratio: 1.391587e-01	ci left: 5.950087e-04	ci right 6.847697e-04	k: 792	n:1240000
KS ci ratio: 1.166046e-02	ci left: 8.304181e-02	ci right 8.401658e-02	k: 103575	n:1240000
PLCL1   1240000 perm   1036 sec   (1197 perm/sec)   p_kst 8.352823e-02   p_cons 6.387097e-04   p_joint 1.203226e-03

Joint ci ratio: 1.017663e-01	ci left: 1.125253e-03	ci right 1.246677e-03	k: 1481	n:1250000
Cons ci ratio: 1.384619e-01	ci left: 5.964264e-04	ci right 6.859137e-04	k: 800	n:1250000
KS ci ratio: 1.161380e-02	ci left: 8.304274e-02	ci right 8.401359e-02	k: 104409	n:1250000
PLCL1   1250000 perm   1049 sec   (1191 perm/sec)   p_kst 8.352720e-02   p_cons 6.400000e-04   p_joint 1.184800e-03

Joint ci ratio: 1.037117e-01	ci left: 1.073792e-03	ci right 1.192013e-03	k: 1426	n:1260000
Cons ci ratio: 1.377756e-01	ci left: 5.978227e-04	ci right 6.870383e-04	k: 808	n:1260000
KS ci ratio: 1.156734e-02	ci left: 8.304840e-02	ci right 8.401542e-02	k: 105249	n:1260000
PLCL1   1260000 perm   1063 sec   (1185 perm/sec)   p_kst 8.353095e-02   p_cons 6.412698e-04   p_joint 1.131746e-03

Joint ci ratio: 1.035308e-01	ci left: 1.069171e-03	ci right 1.186666e-03	k: 1431	n:1270000
Cons ci ratio: 1.375210e-01	ci left: 5.953962e-04	ci right 6.840722e-04	k: 811	n:1270000
KS ci ratio: 1.152286e-02	ci left: 8.303514e-02	ci right 8.399826e-02	k: 106065	n:1270000
PLCL1   1270000 perm   1077 sec   (1179 perm/sec)   p_kst 8.351575e-02   p_cons 6.385827e-04   p_joint 1.126772e-03

Joint ci ratio: 1.030282e-01	ci left: 1.071474e-03	ci right 1.188615e-03	k: 1445	n:1280000
Cons ci ratio: 1.372678e-01	ci left: 5.930078e-04	ci right 6.811522e-04	k: 814	n:1280000
KS ci ratio: 1.147777e-02	ci left: 8.303690e-02	ci right 8.399624e-02	k: 106900	n:1280000
PLCL1   1280000 perm   1091 sec   (1173 perm/sec)   p_kst 8.351562e-02   p_cons 6.359375e-04   p_joint 1.128906e-03

Joint ci ratio: 1.027092e-01	ci left: 1.069965e-03	ci right 1.186557e-03	k: 1454	n:1290000
Cons ci ratio: 1.367653e-01	ci left: 5.929026e-04	ci right 6.806824e-04	k: 820	n:1290000
KS ci ratio: 1.143424e-02	ci left: 8.302472e-02	ci right 8.398026e-02	k: 107717	n:1290000
PLCL1   1290000 perm   1106 sec   (1167 perm/sec)   p_kst 8.350155e-02   p_cons 6.356589e-04   p_joint 1.127132e-03

Joint ci ratio: 1.027804e-01	ci left: 1.060235e-03	ci right 1.175852e-03	k: 1452	n:1300000
Cons ci ratio: 1.365163e-01	ci left: 5.905705e-04	ci right 6.778330e-04	k: 823	n:1300000
KS ci ratio: 1.139035e-02	ci left: 8.302424e-02	ci right 8.397608e-02	k: 108549	n:1300000
PLCL1   1300000 perm   1120 sec   (1161 perm/sec)   p_kst 8.349923e-02   p_cons 6.330769e-04   p_joint 1.116923e-03

Joint ci ratio: 8.918664e-02	ci left: 1.406832e-03	ci right 1.538899e-03	k: 1928	n:1310000
Cons ci ratio: 1.357767e-01	ci left: 5.926986e-04	ci right 6.797627e-04	k: 832	n:1310000
KS ci ratio: 1.134708e-02	ci left: 8.302225e-02	ci right 8.397043e-02	k: 109379	n:1310000
PLCL1   1310000 perm   1134 sec   (1155 perm/sec)   p_kst 8.349542e-02   p_cons 6.351145e-04   p_joint 1.471756e-03

Joint ci ratio: 8.888768e-02	ci left: 1.405804e-03	ci right 1.537309e-03	k: 1941	n:1320000
Cons ci ratio: 1.349688e-01	ci left: 5.955277e-04	ci right 6.824451e-04	k: 842	n:1320000
KS ci ratio: 1.130681e-02	ci left: 8.298630e-02	ci right 8.393068e-02	k: 110164	n:1320000
PLCL1   1320000 perm   1148 sec   (1150 perm/sec)   p_kst 8.345758e-02   p_cons 6.378788e-04   p_joint 1.470455e-03

Joint ci ratio: 8.843330e-02	ci left: 1.409938e-03	ci right 1.541121e-03	k: 1961	n:1330000
Cons ci ratio: 1.344911e-01	ci left: 5.954093e-04	ci right 6.819772e-04	k: 848	n:1330000
KS ci ratio: 1.126354e-02	ci left: 8.299739e-02	ci right 8.393826e-02	k: 111011	n:1330000
PLCL1   1330000 perm   1163 sec   (1144 perm/sec)   p_kst 8.346692e-02   p_cons 6.375940e-04   p_joint 1.474436e-03

Joint ci ratio: 8.825378e-02	ci left: 1.405254e-03	ci right 1.535722e-03	k: 1969	n:1340000
Cons ci ratio: 1.342542e-01	ci left: 5.931295e-04	ci right 6.792019e-04	k: 851	n:1340000
KS ci ratio: 1.121961e-02	ci left: 8.302395e-02	ci right 8.396143e-02	k: 111879	n:1340000
PLCL1   1340000 perm   1177 sec   (1138 perm/sec)   p_kst 8.349179e-02   p_cons 6.350746e-04   p_joint 1.469403e-03

Joint ci ratio: 8.823184e-02	ci left: 1.395569e-03	ci right 1.525104e-03	k: 1970	n:1350000
Cons ci ratio: 1.340972e-01	ci left: 5.901676e-04	ci right 6.757020e-04	k: 853	n:1350000
KS ci ratio: 1.117716e-02	ci left: 8.303683e-02	ci right 8.397088e-02	k: 112729	n:1350000
PLCL1   1350000 perm   1192 sec   (1133 perm/sec)   p_kst 8.350296e-02   p_cons 6.318519e-04   p_joint 1.459259e-03

Joint ci ratio: 8.925859e-02	ci left: 1.352952e-03	ci right 1.480069e-03	k: 1925	n:1360000
Cons ci ratio: 1.337843e-01	ci left: 5.886707e-04	ci right 6.737734e-04	k: 857	n:1360000
KS ci ratio: 1.113498e-02	ci left: 8.305246e-02	ci right 8.398314e-02	k: 113583	n:1360000
PLCL1   1360000 perm   1207 sec   (1127 perm/sec)   p_kst 8.351691e-02   p_cons 6.301471e-04   p_joint 1.415441e-03

Joint ci ratio: 8.916638e-02	ci left: 1.345931e-03	ci right 1.472250e-03	k: 1929	n:1370000
Cons ci ratio: 1.330113e-01	ci left: 5.914296e-04	ci right 6.763980e-04	k: 867	n:1370000
KS ci ratio: 1.109480e-02	ci left: 8.304675e-02	ci right 8.397399e-02	k: 114408	n:1370000
PLCL1   1370000 perm   1221 sec   (1122 perm/sec)   p_kst 8.350949e-02   p_cons 6.328467e-04   p_joint 1.408029e-03

Joint ci ratio: 9.120050e-02	ci left: 1.275970e-03	ci right 1.398602e-03	k: 1844	n:1380000
Cons ci ratio: 1.324781e-01	ci left: 5.920479e-04	ci right 6.767373e-04	k: 874	n:1380000
KS ci ratio: 1.105731e-02	ci left: 8.301005e-02	ci right 8.393373e-02	k: 115190	n:1380000
PLCL1   1380000 perm   1236 sec   (1116 perm/sec)   p_kst 8.347101e-02   p_cons 6.333333e-04   p_joint 1.336232e-03

Joint ci ratio: 9.083196e-02	ci left: 1.277337e-03	ci right 1.399577e-03	k: 1859	n:1390000
Cons ci ratio: 1.319513e-01	ci left: 5.926580e-04	ci right 6.770711e-04	k: 881	n:1390000
KS ci ratio: 1.101585e-02	ci left: 8.303416e-02	ci right 8.395462e-02	k: 116056	n:1390000
PLCL1   1390000 perm   1251 sec   (1111 perm/sec)   p_kst 8.349353e-02   p_cons 6.338129e-04   p_joint 1.337410e-03

Joint ci ratio: 9.044370e-02	ci left: 1.279382e-03	ci right 1.401267e-03	k: 1875	n:1400000
Cons ci ratio: 1.312094e-01	ci left: 5.953325e-04	ci right 6.796127e-04	k: 891	n:1400000
KS ci ratio: 1.097787e-02	ci left: 8.301590e-02	ci right 8.393297e-02	k: 116863	n:1400000
PLCL1   1400000 perm   1267 sec   (1105 perm/sec)   p_kst 8.347357e-02   p_cons 6.364286e-04   p_joint 1.339286e-03

Joint ci ratio: 9.609799e-02	ci left: 1.122068e-03	ci right 1.236025e-03	k: 1661	n:1410000
Cons ci ratio: 1.302633e-01	ci left: 6.000287e-04	ci right 6.843139e-04	k: 904	n:1410000
KS ci ratio: 1.093880e-02	ci left: 8.301842e-02	ci right 8.393223e-02	k: 117699	n:1410000
PLCL1   1410000 perm   1282 sec   (1100 perm/sec)   p_kst 8.347447e-02   p_cons 6.411348e-04   p_joint 1.178014e-03

Joint ci ratio: 9.581024e-02	ci left: 1.121039e-03	ci right 1.234532e-03	k: 1671	n:1420000
Cons ci ratio: 1.300481e-01	ci left: 5.978470e-04	ci right 6.816762e-04	k: 907	n:1420000
KS ci ratio: 1.090026e-02	ci left: 8.301950e-02	ci right 8.393008e-02	k: 118533	n:1420000
PLCL1   1420000 perm   1297 sec   (1095 perm/sec)   p_kst 8.347394e-02   p_cons 6.387324e-04   p_joint 1.176761e-03

Joint ci ratio: 9.555351e-02	ci left: 1.119343e-03	ci right 1.232343e-03	k: 1680	n:1430000
Cons ci ratio: 1.296916e-01	ci left: 5.970491e-04	ci right 6.805193e-04	k: 912	n:1430000
KS ci ratio: 1.086251e-02	ci left: 8.301500e-02	ci right 8.392235e-02	k: 119359	n:1430000
PLCL1   1430000 perm   1313 sec   (1090 perm/sec)   p_kst 8.346783e-02   p_cons 6.377622e-04   p_joint 1.174825e-03

Joint ci ratio: 9.507380e-02	ci left: 1.123094e-03	ci right 1.235872e-03	k: 1697	n:1440000
Cons ci ratio: 1.291270e-01	ci left: 5.982787e-04	ci right 6.815288e-04	k: 920	n:1440000
KS ci ratio: 1.082250e-02	ci left: 8.304797e-02	ci right 8.395232e-02	k: 120239	n:1440000
PLCL1   1440000 perm   1328 sec   (1085 perm/sec)   p_kst 8.349931e-02   p_cons 6.388889e-04   p_joint 1.178472e-03

Joint ci ratio: 9.507419e-02	ci left: 1.115348e-03	ci right 1.227349e-03	k: 1697	n:1450000
Cons ci ratio: 1.284315e-01	ci left: 6.008270e-04	ci right 6.839471e-04	k: 930	n:1450000
KS ci ratio: 1.078560e-02	ci left: 8.304265e-02	ci right 8.394384e-02	k: 121064	n:1450000
PLCL1   1450000 perm   1343 sec   (1079 perm/sec)   p_kst 8.349241e-02   p_cons 6.413793e-04   p_joint 1.170345e-03

Joint ci ratio: 9.457403e-02	ci left: 1.119746e-03	ci right 1.231563e-03	k: 1715	n:1460000
Cons ci ratio: 1.276792e-01	ci left: 6.040048e-04	ci right 6.870379e-04	k: 941	n:1460000
KS ci ratio: 1.074735e-02	ci left: 8.306201e-02	ci right 8.396019e-02	k: 121925	n:1460000
PLCL1   1460000 perm   1359 sec   (1074 perm/sec)   p_kst 8.351027e-02   p_cons 6.445205e-04   p_joint 1.174658e-03

Joint ci ratio: 7.077854e-02	ci left: 2.008597e-03	ci right 2.156641e-03	k: 3060	n:1470000
Cons ci ratio: 1.139731e-01	ci left: 7.582459e-04	ci right 8.505419e-04	k: 1181	n:1470000
KS ci ratio: 1.070964e-02	ci left: 8.307907e-02	ci right 8.397427e-02	k: 122783	n:1470000
PLCL1   1470000 perm   1375 sec   (1069 perm/sec)   p_kst 8.352585e-02   p_cons 8.034014e-04   p_joint 2.081633e-03

Joint ci ratio: 6.897352e-02	ci left: 2.102576e-03	ci right 2.253437e-03	k: 3222	n:1480000
Cons ci ratio: 1.133039e-01	ci left: 7.623132e-04	ci right 8.545231e-04	k: 1195	n:1480000
KS ci ratio: 1.067365e-02	ci left: 8.307704e-02	ci right 8.396919e-02	k: 123613	n:1480000
PLCL1   1480000 perm   1391 sec   (1064 perm/sec)   p_kst 8.352230e-02   p_cons 8.074324e-04   p_joint 2.177027e-03

Joint ci ratio: 6.904921e-02	ci left: 2.083847e-03	ci right 2.233535e-03	k: 3215	n:1490000
Cons ci ratio: 1.131150e-01	ci left: 7.598055e-04	ci right 8.515487e-04	k: 1199	n:1490000
KS ci ratio: 1.063867e-02	ci left: 8.306566e-02	ci right 8.395475e-02	k: 124429	n:1490000
PLCL1   1490000 perm   1407 sec   (1059 perm/sec)   p_kst 8.350940e-02   p_cons 8.046980e-04   p_joint 2.157718e-03

Joint ci ratio: 6.871859e-02	ci left: 2.090266e-03	ci right 2.239667e-03	k: 3246	n:1500000
Cons ci ratio: 1.126466e-01	ci left: 7.612186e-04	ci right 8.527265e-04	k: 1209	n:1500000
KS ci ratio: 1.060144e-02	ci left: 8.309169e-02	ci right 8.397792e-02	k: 125301	n:1500000
PLCL1   1500000 perm   1422 sec   (1055 perm/sec)   p_kst 8.353400e-02   p_cons 8.060000e-04   p_joint 2.164000e-03

Joint ci ratio: 6.688604e-02	ci left: 2.193611e-03	ci right 2.346056e-03	k: 3426	n:1510000
Cons ci ratio: 1.123684e-01	ci left: 7.600391e-04	ci right 8.511646e-04	k: 1215	n:1510000
KS ci ratio: 1.056881e-02	ci left: 8.305659e-02	ci right 8.393971e-02	k: 126081	n:1510000
PLCL1   1510000 perm   1438 sec   (1050 perm/sec)   p_kst 8.349735e-02   p_cons 8.046358e-04   p_joint 2.268874e-03

Joint ci ratio: 6.672088e-02	ci left: 2.190177e-03	ci right 2.341993e-03	k: 3443	n:1520000
Cons ci ratio: 1.122302e-01	ci left: 7.569571e-04	ci right 8.475940e-04	k: 1218	n:1520000
KS ci ratio: 1.053430e-02	ci left: 8.305347e-02	ci right 8.393365e-02	k: 126909	n:1520000
PLCL1   1520000 perm   1454 sec   (1045 perm/sec)   p_kst 8.349276e-02   p_cons 8.013158e-04   p_joint 2.265132e-03

Joint ci ratio: 6.692619e-02	ci left: 2.162365e-03	ci right 2.312732e-03	k: 3422	n:1530000
Cons ci ratio: 1.118182e-01	ci left: 7.577272e-04	ci right 8.481013e-04	k: 1227	n:1530000
KS ci ratio: 1.050045e-02	ci left: 8.304582e-02	ci right 8.392308e-02	k: 127730	n:1530000
PLCL1   1530000 perm   1471 sec   (1040 perm/sec)   p_kst 8.348366e-02   p_cons 8.019608e-04   p_joint 2.236601e-03

Joint ci ratio: 6.679967e-02	ci left: 2.156624e-03	ci right 2.306297e-03	k: 3435	n:1540000
Cons ci ratio: 1.116820e-01	ci left: 7.547004e-04	ci right 8.445967e-04	k: 1230	n:1540000
KS ci ratio: 1.046793e-02	ci left: 8.302338e-02	ci right 8.389767e-02	k: 128528	n:1540000
PLCL1   1540000 perm   1487 sec   (1036 perm/sec)   p_kst 8.345974e-02   p_cons 7.987013e-04   p_joint 2.230519e-03

Joint ci ratio: 6.657720e-02	ci left: 2.157301e-03	ci right 2.306504e-03	k: 3458	n:1550000
Cons ci ratio: 1.110968e-01	ci left: 7.579849e-04	ci right 8.477682e-04	k: 1243	n:1550000
KS ci ratio: 1.043405e-02	ci left: 8.302569e-02	ci right 8.389716e-02	k: 129364	n:1550000
PLCL1   1550000 perm   1503 sec   (1031 perm/sec)   p_kst 8.346065e-02   p_cons 8.019355e-04   p_joint 2.230968e-03

Joint ci ratio: 6.644305e-02	ci left: 2.152297e-03	ci right 2.300842e-03	k: 3472	n:1560000
Cons ci ratio: 1.108743e-01	ci left: 7.562421e-04	ci right 8.456279e-04	k: 1248	n:1560000
KS ci ratio: 1.040206e-02	ci left: 8.300495e-02	ci right 8.387352e-02	k: 130164	n:1560000
PLCL1   1560000 perm   1520 sec   (1026 perm/sec)   p_kst 8.343846e-02   p_cons 8.000000e-04   p_joint 2.225641e-03

Joint ci ratio: 6.662643e-02	ci left: 2.126687e-03	ci right 2.273885e-03	k: 3453	n:1570000
Cons ci ratio: 1.105649e-01	ci left: 7.557604e-04	ci right 8.448238e-04	k: 1255	n:1570000
KS ci ratio: 1.036907e-02	ci left: 8.300355e-02	ci right 8.386933e-02	k: 130994	n:1570000
PLCL1   1570000 perm   1536 sec   (1022 perm/sec)   p_kst 8.343567e-02   p_cons 7.993631e-04   p_joint 2.199363e-03

Joint ci ratio: 6.642482e-02	ci left: 2.126297e-03	ci right 2.273006e-03	k: 3474	n:1580000
Cons ci ratio: 1.103456e-01	ci left: 7.540542e-04	ci right 8.427288e-04	k: 1260	n:1580000
KS ci ratio: 1.033699e-02	ci left: 8.299333e-02	ci right 8.385630e-02	k: 131810	n:1580000
PLCL1   1580000 perm   1553 sec   (1017 perm/sec)   p_kst 8.342405e-02   p_cons 7.974684e-04   p_joint 2.198734e-03

Joint ci ratio: 6.617763e-02	ci left: 2.129005e-03	ci right 2.275333e-03	k: 3500	n:1590000
Cons ci ratio: 1.100406e-01	ci left: 7.535929e-04	ci right 8.419525e-04	k: 1267	n:1590000
KS ci ratio: 1.030373e-02	ci left: 8.300520e-02	ci right 8.386550e-02	k: 132661	n:1590000
PLCL1   1590000 perm   1570 sec   (1013 perm/sec)   p_kst 8.343459e-02   p_cons 7.968553e-04   p_joint 2.201258e-03

Joint ci ratio: 6.598006e-02	ci left: 2.128607e-03	ci right 2.274454e-03	k: 3521	n:1600000
Cons ci ratio: 1.094807e-01	ci left: 7.567849e-04	ci right 8.450381e-04	k: 1280	n:1600000
KS ci ratio: 1.027061e-02	ci left: 8.301942e-02	ci right 8.387709e-02	k: 133516	n:1600000
PLCL1   1600000 perm   1587 sec   (1008 perm/sec)   p_kst 8.344750e-02   p_cons 8.000000e-04   p_joint 2.200625e-03

Joint ci ratio: 6.580287e-02	ci left: 2.126993e-03	ci right 2.272323e-03	k: 3540	n:1610000
Cons ci ratio: 1.092252e-01	ci left: 7.557092e-04	ci right 8.436181e-04	k: 1286	n:1610000
KS ci ratio: 1.023802e-02	ci left: 8.303037e-02	ci right 8.388541e-02	k: 134366	n:1610000
PLCL1   1610000 perm   1604 sec   (1004 perm/sec)   p_kst 8.345714e-02   p_cons 7.987578e-04   p_joint 2.198758e-03

Joint ci ratio: 6.582195e-02	ci left: 2.112648e-03	ci right 2.257042e-03	k: 3538	n:1620000
Cons ci ratio: 1.090138e-01	ci left: 7.540464e-04	ci right 8.415812e-04	k: 1291	n:1620000
KS ci ratio: 1.020668e-02	ci left: 8.302702e-02	ci right 8.387940e-02	k: 135193	n:1620000
PLCL1   1620000 perm   1621 sec   (999 perm/sec)   p_kst 8.345247e-02   p_cons 7.969136e-04   p_joint 2.183951e-03

Joint ci ratio: 6.585037e-02	ci left: 2.097877e-03	ci right 2.241325e-03	k: 3535	n:1630000
Cons ci ratio: 1.085943e-01	ci left: 7.553884e-04	ci right 8.427200e-04	k: 1301	n:1630000
KS ci ratio: 1.017669e-02	ci left: 8.300781e-02	ci right 8.385747e-02	k: 135994	n:1630000
PLCL1   1630000 perm   1638 sec   (995 perm/sec)   p_kst 8.343190e-02   p_cons 7.981595e-04   p_joint 2.168712e-03

Joint ci ratio: 6.565571e-02	ci left: 2.097679e-03	ci right 2.240673e-03	k: 3556	n:1640000
Cons ci ratio: 1.081383e-01	ci left: 7.573080e-04	ci right 8.444704e-04	k: 1312	n:1640000
KS ci ratio: 1.014555e-02	ci left: 8.301013e-02	ci right 8.385720e-02	k: 136830	n:1640000
PLCL1   1640000 perm   1656 sec   (991 perm/sec)   p_kst 8.343293e-02   p_cons 8.000000e-04   p_joint 2.168293e-03

Joint ci ratio: 6.555464e-02	ci left: 2.091523e-03	ci right 2.233870e-03	k: 3567	n:1650000
Cons ci ratio: 1.079331e-01	ci left: 7.556666e-04	ci right 8.424646e-04	k: 1317	n:1650000
KS ci ratio: 1.011469e-02	ci left: 8.301242e-02	ci right 8.385692e-02	k: 137666	n:1650000
PLCL1   1650000 perm   1673 sec   (986 perm/sec)   p_kst 8.343394e-02   p_cons 7.981818e-04   p_joint 2.161818e-03

Joint ci ratio: 6.531700e-02	ci left: 2.094330e-03	ci right 2.236332e-03	k: 3593	n:1660000
Cons ci ratio: 1.074854e-01	ci left: 7.575624e-04	ci right 8.441944e-04	k: 1328	n:1660000
KS ci ratio: 1.008432e-02	ci left: 8.301168e-02	ci right 8.385363e-02	k: 138497	n:1660000
PLCL1   1660000 perm   1691 sec   (982 perm/sec)   p_kst 8.343193e-02   p_cons 8.000000e-04   p_joint 2.164458e-03

Joint ci ratio: 6.509996e-02	ci left: 2.095926e-03	ci right 2.237546e-03	k: 3617	n:1670000
Cons ci ratio: 1.071634e-01	ci left: 7.576880e-04	ci right 8.440583e-04	k: 1336	n:1670000
KS ci ratio: 1.005496e-02	ci left: 8.299961e-02	ci right 8.383896e-02	k: 139309	n:1670000
PLCL1   1670000 perm   1708 sec   (978 perm/sec)   p_kst 8.341856e-02   p_cons 8.000000e-04   p_joint 2.165868e-03

Joint ci ratio: 6.495660e-02	ci left: 2.092819e-03	ci right 2.233906e-03	k: 3633	n:1680000
Cons ci ratio: 1.069238e-01	ci left: 7.566537e-04	ci right 8.427012e-04	k: 1342	n:1680000
KS ci ratio: 1.002464e-02	ci left: 8.300609e-02	ci right 8.384297e-02	k: 140152	n:1680000
PLCL1   1680000 perm   1726 sec   (974 perm/sec)   p_kst 8.342381e-02   p_cons 7.988095e-04   p_joint 2.162500e-03

Joint ci ratio: 6.517304e-02	ci left: 2.066464e-03	ci right 2.206256e-03	k: 3609	n:1690000
Cons ci ratio: 1.068047e-01	ci left: 7.539041e-04	ci right 8.395375e-04	k: 1345	n:1690000
KS ci ratio: 9.801178e-03	ci left: 8.604354e-02	ci right 8.689160e-02	k: 146129	n:1690000
PLCL1   1690000 perm   1743 sec   (970 perm/sec)   p_kst 8.646686e-02   p_cons 7.958580e-04   p_joint 2.135503e-03

Joint ci ratio: 6.501123e-02	ci left: 2.064725e-03	ci right 2.204039e-03	k: 3627	n:1700000
Cons ci ratio: 1.063708e-01	ci left: 7.557675e-04	ci right 8.412420e-04	k: 1356	n:1700000
KS ci ratio: 9.772115e-03	ci left: 8.604792e-02	ci right 8.689349e-02	k: 146999	n:1700000
PLCL1   1700000 perm   1761 sec   (966 perm/sec)   p_kst 8.647000e-02   p_cons 7.976471e-04   p_joint 2.133529e-03

Joint ci ratio: 6.361242e-02	ci left: 2.145291e-03	ci right 2.286813e-03	k: 3788	n:1710000
Cons ci ratio: 1.061365e-01	ci left: 7.547633e-04	ci right 8.399245e-04	k: 1362	n:1710000
KS ci ratio: 9.743525e-03	ci left: 8.604875e-02	ci right 8.689184e-02	k: 147863	n:1710000
PLCL1   1710000 perm   1779 sec   (961 perm/sec)   p_kst 8.646959e-02   p_cons 7.964912e-04   p_joint 2.215205e-03

Joint ci ratio: 6.340355e-02	ci left: 2.147123e-03	ci right 2.288283e-03	k: 3813	n:1720000
Cons ci ratio: 1.059037e-01	ci left: 7.537710e-04	ci right 8.386220e-04	k: 1368	n:1720000
KS ci ratio: 9.718225e-03	ci left: 8.600026e-02	ci right 8.684067e-02	k: 148642	n:1720000
PLCL1   1720000 perm   1796 sec   (958 perm/sec)   p_kst 8.641977e-02   p_cons 7.953488e-04   p_joint 2.216860e-03

Joint ci ratio: 6.322973e-02	ci left: 2.146658e-03	ci right 2.287387e-03	k: 3834	n:1730000
Cons ci ratio: 1.055957e-01	ci left: 7.539159e-04	ci right 8.385210e-04	k: 1376	n:1730000
KS ci ratio: 9.690849e-03	ci left: 8.598924e-02	ci right 8.682717e-02	k: 149485	n:1730000
PLCL1   1730000 perm   1814 sec   (954 perm/sec)   p_kst 8.640751e-02   p_cons 7.953757e-04   p_joint 2.216185e-03

Joint ci ratio: 6.347946e-02	ci left: 2.117352e-03	ci right 2.256727e-03	k: 3804	n:1740000
Cons ci ratio: 1.054046e-01	ci left: 7.523808e-04	ci right 8.366514e-04	k: 1381	n:1740000
KS ci ratio: 9.662156e-03	ci left: 8.600359e-02	ci right 8.683916e-02	k: 150372	n:1740000
PLCL1   1740000 perm   1832 sec   (950 perm/sec)   p_kst 8.642069e-02   p_cons 7.936782e-04   p_joint 2.186207e-03

Joint ci ratio: 6.337978e-02	ci left: 2.112001e-03	ci right 2.250798e-03	k: 3816	n:1750000
Cons ci ratio: 1.051765e-01	ci left: 7.514197e-04	ci right 8.353893e-04	k: 1387	n:1750000
KS ci ratio: 9.635145e-03	ci left: 8.599440e-02	ci right 8.682754e-02	k: 151218	n:1750000
PLCL1   1750000 perm   1850 sec   (946 perm/sec)   p_kst 8.641029e-02   p_cons 7.925714e-04   p_joint 2.180571e-03

Joint ci ratio: 6.343015e-02	ci left: 2.096645e-03	ci right 2.234547e-03	k: 3810	n:1760000
Cons ci ratio: 1.048747e-01	ci left: 7.515764e-04	ci right 8.353076e-04	k: 1395	n:1760000
KS ci ratio: 9.609847e-03	ci left: 8.596094e-02	ci right 8.679156e-02	k: 152021	n:1760000
PLCL1   1760000 perm   1869 sec   (942 perm/sec)   p_kst 8.637557e-02   p_cons 7.926136e-04   p_joint 2.164773e-03

Joint ci ratio: 6.328923e-02	ci left: 2.094252e-03	ci right 2.231679e-03	k: 3827	n:1770000
Cons ci ratio: 1.045755e-01	ci left: 7.517316e-04	ci right 8.352265e-04	k: 1403	n:1770000
KS ci ratio: 9.582551e-03	ci left: 8.596394e-02	ci right 8.679221e-02	k: 152888	n:1770000
PLCL1   1770000 perm   1887 sec   (938 perm/sec)   p_kst 8.637740e-02   p_cons 7.926554e-04   p_joint 2.162147e-03

Joint ci ratio: 6.313280e-02	ci left: 2.092992e-03	ci right 2.229984e-03	k: 3846	n:1780000
Cons ci ratio: 1.043158e-01	ci left: 7.513382e-04	ci right 8.345695e-04	k: 1410	n:1780000
KS ci ratio: 9.555350e-03	ci left: 8.596916e-02	ci right 8.679511e-02	k: 153759	n:1780000
PLCL1   1780000 perm   1906 sec   (934 perm/sec)   p_kst 8.638146e-02   p_cons 7.921348e-04   p_joint 2.160674e-03

Joint ci ratio: 6.340630e-02	ci left: 2.063154e-03	ci right 2.198800e-03	k: 3813	n:1790000
Cons ci ratio: 1.039481e-01	ci left: 7.525819e-04	ci right 8.356391e-04	k: 1420	n:1790000
KS ci ratio: 9.529391e-03	ci left: 8.595759e-02	ci right 8.678118e-02	k: 154600	n:1790000
PLCL1   1790000 perm   1924 sec   (930 perm/sec)   p_kst 8.636872e-02   p_cons 7.932961e-04   p_joint 2.130168e-03

Joint ci ratio: 6.258970e-02	ci left: 2.106374e-03	ci right 2.243013e-03	k: 3913	n:1800000
Cons ci ratio: 1.036204e-01	ci left: 7.532711e-04	ci right 8.361264e-04	k: 1429	n:1800000
KS ci ratio: 9.500734e-03	ci left: 8.599439e-02	ci right 8.681583e-02	k: 155528	n:1800000
PLCL1   1800000 perm   1943 sec   (927 perm/sec)   p_kst 8.640444e-02   p_cons 7.938889e-04   p_joint 2.173889e-03

Joint ci ratio: 6.244633e-02	ci left: 2.104526e-03	ci right 2.240721e-03	k: 3931	n:1810000
Cons ci ratio: 1.035482e-01	ci left: 7.501857e-04	ci right 8.326405e-04	k: 1431	n:1810000
KS ci ratio: 9.473260e-03	ci left: 8.601534e-02	ci right 8.683460e-02	k: 156428	n:1810000
PLCL1   1810000 perm   1961 sec   (923 perm/sec)   p_kst 8.642431e-02   p_cons 7.906077e-04   p_joint 2.171823e-03

Joint ci ratio: 6.223294e-02	ci left: 2.107567e-03	ci right 2.243476e-03	k: 3958	n:1820000
Cons ci ratio: 1.031885e-01	ci left: 7.514163e-04	ci right 8.337021e-04	k: 1441	n:1820000
KS ci ratio: 9.448983e-03	ci left: 8.598672e-02	ci right 8.680360e-02	k: 157238	n:1820000
PLCL1   1820000 perm   1980 sec   (919 perm/sec)   p_kst 8.639451e-02   p_cons 7.917582e-04   p_joint 2.174725e-03

Joint ci ratio: 6.230432e-02	ci left: 2.091208e-03	ci right 2.226222e-03	k: 3949	n:1830000
Cons ci ratio: 1.029745e-01	ci left: 7.505043e-04	ci right 8.325095e-04	k: 1447	n:1830000
KS ci ratio: 9.423422e-03	ci left: 8.598296e-02	ci right 8.679758e-02	k: 158093	n:1830000
PLCL1   1830000 perm   1999 sec   (915 perm/sec)   p_kst 8.638962e-02   p_cons 7.907104e-04   p_joint 2.157923e-03

Joint ci ratio: 6.215506e-02	ci left: 2.090008e-03	ci right 2.224610e-03	k: 3968	n:1840000
Cons ci ratio: 1.028327e-01	ci left: 7.485434e-04	ci right 8.302149e-04	k: 1451	n:1840000
KS ci ratio: 9.398878e-03	ci left: 8.596568e-02	ci right 8.677801e-02	k: 158923	n:1840000
PLCL1   1840000 perm   2018 sec   (912 perm/sec)   p_kst 8.637120e-02   p_cons 7.885870e-04   p_joint 2.156522e-03

Joint ci ratio: 6.201466e-02	ci left: 2.088289e-03	ci right 2.222466e-03	k: 3986	n:1850000
Cons ci ratio: 1.026915e-01	ci left: 7.466038e-04	ci right 8.279450e-04	k: 1455	n:1850000
KS ci ratio: 9.373046e-03	ci left: 8.597341e-02	ci right 8.678356e-02	k: 159799	n:1850000
PLCL1   1850000 perm   2037 sec   (908 perm/sec)   p_kst 8.637784e-02   p_cons 7.864865e-04   p_joint 2.154595e-03

Joint ci ratio: 6.188294e-02	ci left: 2.086060e-03	ci right 2.219799e-03	k: 4003	n:1860000
Cons ci ratio: 1.025508e-01	ci left: 7.446851e-04	ci right 8.256995e-04	k: 1459	n:1860000
KS ci ratio: 9.348574e-03	ci left: 8.596174e-02	ci right 8.676966e-02	k: 160639	n:1860000
PLCL1   1860000 perm   2056 sec   (905 perm/sec)   p_kst 8.636505e-02   p_cons 7.844086e-04   p_joint 2.152151e-03

Joint ci ratio: 6.171362e-02	ci left: 2.086488e-03	ci right 2.219875e-03	k: 4025	n:1870000
Cons ci ratio: 1.023757e-01	ci left: 7.433081e-04	ci right 8.240263e-04	k: 1464	n:1870000
KS ci ratio: 9.322522e-03	ci left: 8.598008e-02	ci right 8.678591e-02	k: 161535	n:1870000
PLCL1   1870000 perm   2076 sec   (901 perm/sec)   p_kst 8.638235e-02   p_cons 7.828877e-04   p_joint 2.152406e-03

Joint ci ratio: 6.153046e-02	ci left: 2.087959e-03	ci right 2.221029e-03	k: 4049	n:1880000
Cons ci ratio: 1.020627e-01	ci left: 7.440192e-04	ci right 8.245527e-04	k: 1473	n:1880000
KS ci ratio: 9.298787e-03	ci left: 8.596267e-02	ci right 8.676627e-02	k: 162364	n:1880000
PLCL1   1880000 perm   2095 sec   (897 perm/sec)   p_kst 8.636383e-02   p_cons 7.835106e-04   p_joint 2.153723e-03

Joint ci ratio: 6.135646e-02	ci left: 2.088894e-03	ci right 2.221634e-03	k: 4072	n:1890000
Cons ci ratio: 1.017868e-01	ci left: 7.442075e-04	ci right 8.245307e-04	k: 1481	n:1890000
KS ci ratio: 9.273024e-03	ci left: 8.598293e-02	ci right 8.678448e-02	k: 163264	n:1890000
PLCL1   1890000 perm   2115 sec   (894 perm/sec)   p_kst 8.638307e-02   p_cons 7.835979e-04   p_joint 2.154497e-03

Joint ci ratio: 6.116148e-02	ci left: 2.091374e-03	ci right 2.223835e-03	k: 4098	n:1900000
Cons ci ratio: 1.013771e-01	ci left: 7.464460e-04	ci right 8.266672e-04	k: 1493	n:1900000
KS ci ratio: 9.247535e-03	ci left: 8.600193e-02	ci right 8.680144e-02	k: 164162	n:1900000
PLCL1   1900000 perm   2134 sec   (890 perm/sec)   p_kst 8.640105e-02   p_cons 7.857895e-04   p_joint 2.156842e-03

Joint ci ratio: 5.881412e-02	ci left: 2.252161e-03	ci right 2.389145e-03	k: 4431	n:1910000
Cons ci ratio: 1.011405e-01	ci left: 7.461100e-04	ci right 8.260968e-04	k: 1500	n:1910000
KS ci ratio: 9.222103e-03	ci left: 8.602334e-02	ci right 8.682084e-02	k: 165065	n:1910000
PLCL1   1910000 perm   2154 sec   (887 perm/sec)   p_kst 8.642147e-02   p_cons 7.853403e-04   p_joint 2.319895e-03

Joint ci ratio: 5.866871e-02	ci left: 2.251721e-03	ci right 2.388328e-03	k: 4453	n:1920000
Cons ci ratio: 1.009055e-01	ci left: 7.457777e-04	ci right 8.255321e-04	k: 1507	n:1920000
KS ci ratio: 9.198032e-03	ci left: 8.602479e-02	ci right 8.682021e-02	k: 165930	n:1920000
PLCL1   1920000 perm   2174 sec   (883 perm/sec)   p_kst 8.642187e-02   p_cons 7.848958e-04   p_joint 2.319271e-03

Joint ci ratio: 5.845895e-02	ci left: 2.256392e-03	ci right 2.392777e-03	k: 4485	n:1930000
Cons ci ratio: 1.005725e-01	ci left: 7.469644e-04	ci right 8.265666e-04	k: 1517	n:1930000
KS ci ratio: 9.173035e-03	ci left: 8.604535e-02	ci right 8.683879e-02	k: 166832	n:1930000
PLCL1   1930000 perm   2193 sec   (880 perm/sec)   p_kst 8.644145e-02   p_cons 7.860104e-04   p_joint 2.323834e-03

Joint ci ratio: 5.872891e-02	ci left: 2.223936e-03	ci right 2.359000e-03	k: 4444	n:1940000
Cons ci ratio: 1.003414e-01	ci left: 7.466317e-04	ci right 8.260048e-04	k: 1524	n:1940000
KS ci ratio: 9.149346e-03	ci left: 8.604668e-02	ci right 8.683806e-02	k: 167697	n:1940000
PLCL1   1940000 perm   2213 sec   (876 perm/sec)   p_kst 8.644175e-02   p_cons 7.855670e-04   p_joint 2.290722e-03

Joint ci ratio: 5.861044e-02	ci left: 2.221626e-03	ci right 2.356269e-03	k: 4462	n:1950000
Cons ci ratio: 1.001447e-01	ci left: 7.458025e-04	ci right 8.249229e-04	k: 1530	n:1950000
KS ci ratio: 9.126579e-03	ci left: 8.603519e-02	ci right 8.682450e-02	k: 168537	n:1950000
PLCL1   1950000 perm   2233 sec   (873 perm/sec)   p_kst 8.642923e-02   p_cons 7.846154e-04   p_joint 2.288205e-03

Joint ci ratio: 6.009316e-02	ci left: 2.101216e-03	ci right 2.231895e-03	k: 4245	n:1960000
Cons ci ratio: 9.975438e-02	ci left: 7.479669e-04	ci right 8.269895e-04	k: 1542	n:1960000
KS ci ratio: 9.102482e-03	ci left: 8.604980e-02	ci right 8.683714e-02	k: 169428	n:1960000
PLCL1   1960000 perm   2254 sec   (870 perm/sec)   p_kst 8.644286e-02   p_cons 7.867347e-04   p_joint 2.165816e-03

Outputting figure to mutsig2_images.part000000000132/PLCL1.13_3312_1960000_0.086443_0.00078673_0.0021658.png
                gene_name: PLCL1
               theta_stop: 0.100 
                    nperm: 1960000 
                     p_ks: 0.086 
        ci_ks_bounds_left: 0.086 
       ci_ks_bounds_right: 0.087 
                   p_cons: 0.00079 
      ci_cons_bounds_left: 0.00075 
     ci_cons_bounds_right: 0.00083 
                  p_joint: 0.0022 
     ci_joint_bounds_left: 0.0021 
    ci_joint_bounds_right: 0.0022 

Current progress: 8 percent done.
PKP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.273486e-02	ci left: 5.793822e-01	ci right 5.987658e-01	k: 5891	n:10000
Cons ci ratio: 5.045670e-02	ci left: 3.667920e-01	ci right 3.858801e-01	k: 3763	n:10000
KS ci ratio: 3.622611e-02	ci left: 5.294702e-01	ci right 5.491069e-01	k: 5393	n:10000
PKP4   10000 perm   2 sec   (4209 perm/sec)   p_kst 5.393000e-01   p_cons 3.763000e-01   p_joint 5.891000e-01

Outputting figure to mutsig2_images.part000000000132/PKP4.11_3663_10000_0.5393_0.3763_0.5891.png
                gene_name: PKP4
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 9 percent done.
PLCB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.975368e-02	ci left: 7.894875e-01	ci right 8.053389e-01	k: 7975	n:10000
Cons ci ratio: 3.140657e-02	ci left: 5.993553e-01	ci right 6.185812e-01	k: 6090	n:10000
KS ci ratio: 2.889536e-02	ci left: 6.384467e-01	ci right 6.572671e-01	k: 6479	n:10000
PLCB1   10000 perm   2 sec   (4580 perm/sec)   p_kst 6.479000e-01   p_cons 6.090000e-01   p_joint 7.975000e-01

Outputting figure to mutsig2_images.part000000000132/PLCB1.8_3882_10000_0.6479_0.609_0.7975.png
                gene_name: PLCB1
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 11 percent done.
PLA2G4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.973370e-02	ci left: 3.735570e-01	ci right 3.927111e-01	k: 3831	n:10000
Cons ci ratio: 1.089155e-02	ci left: 9.231709e-01	ci right 9.333780e-01	k: 9284	n:10000
KS ci ratio: 7.989902e-02	ci left: 1.861912e-01	ci right 2.017874e-01	k: 1939	n:10000
PLA2G4A   10000 perm   2 sec   (5088 perm/sec)   p_kst 1.939000e-01   p_cons 9.284000e-01   p_joint 3.831000e-01

Outputting figure to mutsig2_images.part000000000132/PLA2G4A.7_2318_10000_0.1939_0.9284_0.3831.png
                gene_name: PLA2G4A
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 13 percent done.
PLB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.888455e-02	ci left: 1.290445e-01	ci right 1.425684e-01	k: 1357	n:10000
Cons ci ratio: 5.375114e-02	ci left: 3.377653e-01	ci right 3.565238e-01	k: 3471	n:10000
KS ci ratio: 1.116695e-01	ci left: 1.035416e-01	ci right 1.158868e-01	k: 1096	n:10000
PLB1   10000 perm   2 sec   (4337 perm/sec)   p_kst 1.096000e-01   p_cons 3.471000e-01   p_joint 1.357000e-01

Joint ci ratio: 5.322437e-02	ci left: 2.076398e-01	ci right 2.190437e-01	k: 4266	n:20000
Cons ci ratio: 3.735859e-02	ci left: 3.483647e-01	ci right 3.616774e-01	k: 7100	n:20000
KS ci ratio: 7.916654e-02	ci left: 1.048604e-01	ci right 1.135536e-01	k: 2183	n:20000
PLB1   20000 perm   5 sec   (3900 perm/sec)   p_kst 1.091500e-01   p_cons 3.550000e-01   p_joint 2.133000e-01

Outputting figure to mutsig2_images.part000000000132/PLB1.7_4642_20000_0.10915_0.355_0.2133.png
                gene_name: PLB1
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 15 percent done.
PLCB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.560300e-02	ci left: 2.543910e-01	ci right 2.717472e-01	k: 2630	n:10000
Cons ci ratio: 4.427063e-03	ci left: 9.851247e-01	ci right 9.895847e-01	k: 9875	n:10000
KS ci ratio: 8.802117e-02	ci left: 1.581661e-01	ci right 1.728293e-01	k: 1654	n:10000
PLCB4   10000 perm   2 sec   (4250 perm/sec)   p_kst 1.654000e-01   p_cons 9.875000e-01   p_joint 2.630000e-01

Outputting figure to mutsig2_images.part000000000132/PLCB4.7_3769_10000_0.1654_0.9875_0.263.png
                gene_name: PLCB4
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 17 percent done.
PLCXD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.815202e-02	ci left: 6.503180e-01	ci right 6.689889e-01	k: 6597	n:10000
Cons ci ratio: 1.665611e-02	ci left: 8.398953e-01	ci right 8.541019e-01	k: 8471	n:10000
KS ci ratio: 4.646584e-02	ci left: 4.060162e-01	ci right 4.254329e-01	k: 4157	n:10000
PLCXD3   10000 perm   2 sec   (5878 perm/sec)   p_kst 4.157000e-01   p_cons 8.471000e-01   p_joint 6.597000e-01

Outputting figure to mutsig2_images.part000000000132/PLCXD3.7_978_10000_0.4157_0.8471_0.6597.png
                gene_name: PLCXD3
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 19 percent done.
PLD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.730385e-02	ci left: 5.148561e-01	ci right 5.345295e-01	k: 5247	n:10000
KS ci ratio: 2.782048e-02	ci left: 6.556521e-01	ci right 6.742517e-01	k: 6650	n:10000
PLD1   10000 perm   2 sec   (4385 perm/sec)   p_kst 6.650000e-01   p_cons 5.247000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000132/PLD1.7_3329_10000_0.665_0.5247_1.png
                gene_name: PLD1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 21 percent done.
PLEKHA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.900308e-02	ci left: 6.367370e-01	ci right 6.555778e-01	k: 6462	n:10000
Cons ci ratio: 4.167877e-02	ci left: 4.594788e-01	ci right 4.791391e-01	k: 4693	n:10000
KS ci ratio: 4.241384e-02	ci left: 4.507933e-01	ci right 4.704296e-01	k: 4606	n:10000
PLEKHA5   10000 perm   2 sec   (4707 perm/sec)   p_kst 4.606000e-01   p_cons 4.693000e-01   p_joint 6.462000e-01

Outputting figure to mutsig2_images.part000000000132/PLEKHA5.7_3769_10000_0.4606_0.4693_0.6462.png
                gene_name: PLEKHA5
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 23 percent done.
PLEKHG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.939100e-02	ci left: 6.306030e-01	ci right 6.495153e-01	k: 6401	n:10000
Cons ci ratio: 4.134564e-02	ci left: 4.634731e-01	ci right 4.831424e-01	k: 4733	n:10000
KS ci ratio: 4.430567e-02	ci left: 4.292423e-01	ci right 4.487932e-01	k: 4390	n:10000
PLEKHG1   10000 perm   2 sec   (4108 perm/sec)   p_kst 4.390000e-01   p_cons 4.733000e-01   p_joint 6.401000e-01

Outputting figure to mutsig2_images.part000000000132/PLEKHG1.6_4218_10000_0.439_0.4733_0.6401.png
                gene_name: PLEKHG1
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 25 percent done.
PKP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.409225e-02	ci left: 8.791989e-01	ci right 8.917756e-01	k: 8856	n:10000
Cons ci ratio: 4.170919e-03	ci left: 9.866479e-01	ci right 9.908601e-01	k: 9889	n:10000
KS ci ratio: 1.836726e-02	ci left: 8.123272e-01	ci right 8.274859e-01	k: 8200	n:10000
PKP2   10000 perm   2 sec   (5200 perm/sec)   p_kst 8.200000e-01   p_cons 9.889000e-01   p_joint 8.856000e-01

Outputting figure to mutsig2_images.part000000000132/PKP2.5_2702_10000_0.82_0.9889_0.8856.png
                gene_name: PKP2
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 26 percent done.
PLA1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.388375e-02	ci left: 5.625333e-01	ci right 5.820246e-01	k: 5723	n:10000
Cons ci ratio: 5.856484e-02	ci left: 3.002475e-01	ci right 3.184636e-01	k: 3093	n:10000
KS ci ratio: 2.631022e-02	ci left: 6.802263e-01	ci right 6.984633e-01	k: 6894	n:10000
PLA1A   10000 perm   2 sec   (5815 perm/sec)   p_kst 6.894000e-01   p_cons 3.093000e-01   p_joint 5.723000e-01

Outputting figure to mutsig2_images.part000000000132/PLA1A.5_1415_10000_0.6894_0.3093_0.5723.png
                gene_name: PLA1A
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 28 percent done.
PLA2G6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.456728e-02	ci left: 3.310111e-01	ci right 3.496820e-01	k: 3403	n:10000
Cons ci ratio: 2.805805e-02	ci left: 6.518275e-01	ci right 6.704785e-01	k: 6612	n:10000
KS ci ratio: 8.469983e-02	ci left: 1.688761e-01	ci right 1.839129e-01	k: 1763	n:10000
PLA2G6   10000 perm   2 sec   (5561 perm/sec)   p_kst 1.763000e-01   p_cons 6.612000e-01   p_joint 3.403000e-01

Outputting figure to mutsig2_images.part000000000132/PLA2G6.5_2485_10000_0.1763_0.6612_0.3403.png
                gene_name: PLA2G6
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 30 percent done.
PLCB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.321220e-01	ci left: 7.553121e-02	ci right 8.631442e-02	k: 808	n:10000
Cons ci ratio: 2.954286e-01	ci left: 1.474309e-02	ci right 1.994354e-02	k: 172	n:10000
KS ci ratio: 6.639033e-02	ci left: 2.498415e-01	ci right 2.670994e-01	k: 2584	n:10000
PLCB2   10000 perm   2 sec   (4734 perm/sec)   p_kst 2.584000e-01   p_cons 1.720000e-02   p_joint 8.080000e-02

Joint ci ratio: 1.118587e-01	ci left: 5.460525e-02	ci right 6.112403e-02	k: 1156	n:20000
Cons ci ratio: 2.146584e-01	ci left: 1.463801e-02	ci right 1.820458e-02	k: 327	n:20000
KS ci ratio: 4.599124e-02	ci left: 2.602826e-01	ci right 2.725854e-01	k: 5328	n:20000
PLCB2   20000 perm   5 sec   (4266 perm/sec)   p_kst 2.664000e-01   p_cons 1.635000e-02   p_joint 5.780000e-02

Joint ci ratio: 8.285315e-02	ci left: 6.654940e-02	ci right 7.233432e-02	k: 2082	n:30000
Cons ci ratio: 1.790047e-01	ci left: 1.432368e-02	ci right 1.717122e-02	k: 471	n:30000
KS ci ratio: 3.762074e-02	ci left: 2.607079e-01	ci right 2.707375e-01	k: 7971	n:30000
PLCB2   30000 perm   7 sec   (4088 perm/sec)   p_kst 2.657000e-01   p_cons 1.570000e-02   p_joint 6.940000e-02

Joint ci ratio: 7.447418e-02	ci left: 6.235758e-02	ci right 6.720584e-02	k: 2590	n:40000
Cons ci ratio: 1.563324e-01	ci left: 1.426412e-02	ci right 1.670696e-02	k: 618	n:40000
KS ci ratio: 3.205523e-02	ci left: 2.677428e-01	ci right 2.764903e-01	k: 10884	n:40000
PLCB2   40000 perm   10 sec   (3971 perm/sec)   p_kst 2.721000e-01   p_cons 1.545000e-02   p_joint 6.475000e-02

Joint ci ratio: 6.734579e-02	ci left: 6.131884e-02	ci right 6.561201e-02	k: 3172	n:50000
Cons ci ratio: 1.414857e-01	ci left: 1.404930e-02	ci right 1.620753e-02	k: 755	n:50000
KS ci ratio: 2.868738e-02	ci left: 2.679834e-01	ci right 2.758031e-01	k: 13594	n:50000
PLCB2   50000 perm   13 sec   (3875 perm/sec)   p_kst 2.718800e-01   p_cons 1.510000e-02   p_joint 6.344000e-02

Joint ci ratio: 5.892918e-02	ci left: 6.665575e-02	ci right 7.071942e-02	k: 4120	n:60000
Cons ci ratio: 1.253676e-01	ci left: 1.502729e-02	ci right 1.705325e-02	k: 961	n:60000
KS ci ratio: 2.620885e-02	ci left: 2.680106e-01	ci right 2.751448e-01	k: 16294	n:60000
PLCB2   60000 perm   16 sec   (3791 perm/sec)   p_kst 2.715667e-01   p_cons 1.601667e-02   p_joint 6.866667e-02

Joint ci ratio: 6.168595e-02	ci left: 5.285788e-02	ci right 5.623630e-02	k: 3817	n:70000
Cons ci ratio: 1.161381e-01	ci left: 1.508344e-02	ci right 1.695699e-02	k: 1120	n:70000
KS ci ratio: 2.430754e-02	ci left: 2.675817e-01	ci right 2.741802e-01	k: 18961	n:70000
PLCB2   70000 perm   19 sec   (3716 perm/sec)   p_kst 2.708714e-01   p_cons 1.600000e-02   p_joint 5.452857e-02

Joint ci ratio: 5.334161e-02	ci left: 6.154819e-02	ci right 6.493357e-02	k: 5058	n:80000
Cons ci ratio: 1.079603e-01	ci left: 1.533652e-02	ci right 1.709882e-02	k: 1296	n:80000
KS ci ratio: 2.275120e-02	ci left: 2.675609e-01	ci right 2.737307e-01	k: 21651	n:80000
PLCB2   80000 perm   22 sec   (3632 perm/sec)   p_kst 2.706375e-01   p_cons 1.620000e-02   p_joint 6.322500e-02

Joint ci ratio: 5.013308e-02	ci left: 6.201417e-02	ci right 6.521403e-02	k: 5724	n:90000
Cons ci ratio: 1.013675e-01	ci left: 1.551528e-02	ci right 1.718277e-02	k: 1470	n:90000
KS ci ratio: 2.147875e-02	ci left: 2.672121e-01	ci right 2.730249e-01	k: 24310	n:90000
PLCB2   90000 perm   25 sec   (3568 perm/sec)   p_kst 2.701111e-01   p_cons 1.633333e-02   p_joint 6.360000e-02

Joint ci ratio: 4.438052e-02	ci left: 7.076164e-02	ci right 7.398322e-02	k: 7236	n:100000
Cons ci ratio: 9.570380e-02	ci left: 1.570974e-02	ci right 1.729849e-02	k: 1649	n:100000
KS ci ratio: 2.032356e-02	ci left: 2.683864e-01	ci right 2.739069e-01	k: 27114	n:100000
PLCB2   100000 perm   28 sec   (3511 perm/sec)   p_kst 2.711400e-01   p_cons 1.649000e-02   p_joint 7.236000e-02

Outputting figure to mutsig2_images.part000000000132/PLCB2.5_3686_100000_0.27114_0.01649_0.07236.png
                gene_name: PLCB2
               theta_stop: 0.096 
                    nperm: 100000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.016 
      ci_cons_bounds_left: 0.016 
     ci_cons_bounds_right: 0.017 
                  p_joint: 0.072 
     ci_joint_bounds_left: 0.071 
    ci_joint_bounds_right: 0.074 

Current progress: 32 percent done.
PLCZ1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.389664e-01	ci left: 6.855690e-02	ci right 7.889307e-02	k: 736	n:10000
Cons ci ratio: 1.755337e-02	ci left: 8.255431e-01	ci right 8.402624e-01	k: 8330	n:10000
KS ci ratio: 2.339773e-01	ci left: 2.410011e-02	ci right 3.057918e-02	k: 272	n:10000
PLCZ1   10000 perm   2 sec   (5297 perm/sec)   p_kst 2.720000e-02   p_cons 8.330000e-01   p_joint 7.360000e-02

Joint ci ratio: 8.043316e-02	ci left: 1.018644e-01	ci right 1.104505e-01	k: 2122	n:20000
Cons ci ratio: 1.233119e-02	ci left: 8.295797e-01	ci right 8.399228e-01	k: 16696	n:20000
KS ci ratio: 1.688184e-01	ci left: 2.403039e-02	ci right 2.850878e-02	k: 524	n:20000
PLCZ1   20000 perm   4 sec   (4721 perm/sec)   p_kst 2.620000e-02   p_cons 8.348000e-01   p_joint 1.061000e-01

Joint ci ratio: 7.157206e-02	ci left: 8.763733e-02	ci right 9.417548e-02	k: 2726	n:30000
Cons ci ratio: 1.006457e-02	ci left: 8.306497e-01	ci right 8.390853e-01	k: 25047	n:30000
KS ci ratio: 1.361198e-01	ci left: 2.506623e-02	ci right 2.875949e-02	k: 806	n:30000
PLCZ1   30000 perm   7 sec   (4505 perm/sec)   p_kst 2.686667e-02   p_cons 8.349000e-01   p_joint 9.086667e-02

Joint ci ratio: 7.880816e-02	ci left: 5.594982e-02	ci right 6.056457e-02	k: 2329	n:40000
Cons ci ratio: 8.876051e-03	ci left: 8.261060e-01	ci right 8.334961e-01	k: 33193	n:40000
KS ci ratio: 1.184505e-01	ci left: 2.506931e-02	ci right 2.824990e-02	k: 1065	n:40000
PLCZ1   40000 perm   9 sec   (4366 perm/sec)   p_kst 2.662500e-02   p_cons 8.298250e-01   p_joint 5.822500e-02

Joint ci ratio: 7.814037e-02	ci left: 4.604444e-02	ci right 4.980827e-02	k: 2395	n:50000
Cons ci ratio: 7.907589e-03	ci left: 8.276256e-01	ci right 8.342160e-01	k: 41547	n:50000
KS ci ratio: 1.058029e-01	ci left: 2.530453e-02	ci right 2.815078e-02	k: 1335	n:50000
PLCZ1   50000 perm   12 sec   (4253 perm/sec)   p_kst 2.670000e-02   p_cons 8.309400e-01   p_joint 4.790000e-02

Joint ci ratio: 6.997765e-02	ci left: 4.795817e-02	ci right 5.145222e-02	k: 2981	n:60000
Cons ci ratio: 7.218759e-03	ci left: 8.279100e-01	ci right 8.339247e-01	k: 49856	n:60000
KS ci ratio: 9.721565e-02	ci left: 2.509925e-02	ci right 2.768017e-02	k: 1582	n:60000
PLCZ1   60000 perm   14 sec   (4155 perm/sec)   p_kst 2.636667e-02   p_cons 8.309333e-01   p_joint 4.968333e-02

Outputting figure to mutsig2_images.part000000000132/PLCZ1.5_1883_60000_0.026367_0.83093_0.049683.png
                gene_name: PLCZ1
               theta_stop: 0.097 
                    nperm: 60000 
                     p_ks: 0.026 
        ci_ks_bounds_left: 0.025 
       ci_ks_bounds_right: 0.028 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.050 
     ci_joint_bounds_left: 0.048 
    ci_joint_bounds_right: 0.051 

Current progress: 34 percent done.
PLA2R1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.950796e-02	ci left: 2.328414e-01	ci right 2.497096e-01	k: 2412	n:10000
Cons ci ratio: 6.545109e-02	ci left: 2.552813e-01	ci right 2.726564e-01	k: 2639	n:10000
KS ci ratio: 8.633875e-02	ci left: 1.634706e-01	ci right 1.783216e-01	k: 1708	n:10000
PLA2R1   10000 perm   2 sec   (4614 perm/sec)   p_kst 1.708000e-01   p_cons 2.639000e-01   p_joint 2.412000e-01

Outputting figure to mutsig2_images.part000000000132/PLA2R1.4_4520_10000_0.1708_0.2639_0.2412.png
                gene_name: PLA2R1
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 36 percent done.
PLCB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.476226e-02	ci left: 3.294222e-01	ci right 3.480718e-01	k: 3387	n:10000
Cons ci ratio: 4.171224e-02	ci left: 4.590794e-01	ci right 4.787387e-01	k: 4689	n:10000
KS ci ratio: 7.856994e-02	ci left: 1.914104e-01	ci right 2.071652e-01	k: 1992	n:10000
PLCB3   10000 perm   2 sec   (4802 perm/sec)   p_kst 1.992000e-01   p_cons 4.689000e-01   p_joint 3.387000e-01

Outputting figure to mutsig2_images.part000000000132/PLCB3.4_3829_10000_0.1992_0.4689_0.3387.png
                gene_name: PLCB3
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 38 percent done.
PLCG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.527287e-01	ci left: 5.706232e-02	ci right 6.659491e-02	k: 617	n:10000
Cons ci ratio: 2.963012e-01	ci left: 1.465041e-02	ci right 1.983629e-02	k: 171	n:10000
KS ci ratio: 4.868751e-02	ci left: 3.836086e-01	ci right 4.028536e-01	k: 3932	n:10000
PLCG2   10000 perm   2 sec   (4597 perm/sec)   p_kst 3.932000e-01   p_cons 1.710000e-02   p_joint 6.170000e-02

Joint ci ratio: 1.014994e-01	ci left: 6.586692e-02	ci right 7.295888e-02	k: 1387	n:20000
Cons ci ratio: 2.041526e-01	ci left: 1.625023e-02	ci right 1.999174e-02	k: 361	n:20000
KS ci ratio: 3.401576e-02	ci left: 3.922034e-01	ci right 4.058260e-01	k: 7980	n:20000
PLCG2   20000 perm   5 sec   (4136 perm/sec)   p_kst 3.990000e-01   p_cons 1.805000e-02   p_joint 6.935000e-02

Joint ci ratio: 9.188209e-02	ci left: 5.456588e-02	ci right 5.985361e-02	k: 1715	n:30000
Cons ci ratio: 1.674783e-01	ci left: 1.642981e-02	ci right 1.946457e-02	k: 537	n:30000
KS ci ratio: 2.773607e-02	ci left: 3.941171e-01	ci right 4.052357e-01	k: 11990	n:30000
PLCG2   30000 perm   8 sec   (3962 perm/sec)   p_kst 3.996667e-01   p_cons 1.790000e-02   p_joint 5.716667e-02

Joint ci ratio: 7.568386e-02	ci left: 6.046639e-02	ci right 6.524731e-02	k: 2513	n:40000
Cons ci ratio: 1.438544e-01	ci left: 1.691258e-02	ci right 1.955802e-02	k: 728	n:40000
KS ci ratio: 2.414948e-02	ci left: 3.923001e-01	ci right 4.019149e-01	k: 15884	n:40000
PLCG2   40000 perm   10 sec   (3828 perm/sec)   p_kst 3.971000e-01   p_cons 1.820000e-02   p_joint 6.282500e-02

Joint ci ratio: 7.397019e-02	ci left: 5.120949e-02	ci right 5.516259e-02	k: 2658	n:50000
Cons ci ratio: 1.271308e-01	ci left: 1.747251e-02	ci right 1.986384e-02	k: 932	n:50000
KS ci ratio: 2.156412e-02	ci left: 3.936058e-01	ci right 4.022061e-01	k: 19895	n:50000
PLCG2   50000 perm   13 sec   (3737 perm/sec)   p_kst 3.979000e-01   p_cons 1.864000e-02   p_joint 5.316000e-02

Joint ci ratio: 7.329755e-02	ci left: 4.382981e-02	ci right 4.718100e-02	k: 2729	n:60000
Cons ci ratio: 1.162979e-01	ci left: 1.750155e-02	ci right 1.967870e-02	k: 1114	n:60000
KS ci ratio: 1.899858e-02	ci left: 4.110866e-01	ci right 4.189883e-01	k: 24902	n:60000
PLCG2   60000 perm   16 sec   (3666 perm/sec)   p_kst 4.150333e-01   p_cons 1.856667e-02   p_joint 4.548333e-02

Joint ci ratio: 7.239550e-02	ci left: 3.874277e-02	ci right 4.166693e-02	k: 2813	n:70000
Cons ci ratio: 1.077484e-01	ci left: 1.755635e-02	ci right 1.956956e-02	k: 1298	n:70000
KS ci ratio: 1.757555e-02	ci left: 4.117601e-01	ci right 4.190755e-01	k: 29079	n:70000
PLCG2   70000 perm   19 sec   (3598 perm/sec)   p_kst 4.154143e-01   p_cons 1.854286e-02   p_joint 4.018571e-02

Joint ci ratio: 6.476506e-02	ci left: 4.236758e-02	ci right 4.521563e-02	k: 3502	n:80000
Cons ci ratio: 1.009828e-01	ci left: 1.755310e-02	ci right 1.943205e-02	k: 1478	n:80000
KS ci ratio: 1.644096e-02	ci left: 4.119821e-01	ci right 4.188241e-01	k: 33232	n:80000
PLCG2   80000 perm   23 sec   (3534 perm/sec)   p_kst 4.154000e-01   p_cons 1.847500e-02   p_joint 4.377500e-02

Joint ci ratio: 6.792109e-02	ci left: 3.447539e-02	ci right 3.691021e-02	k: 3211	n:90000
Cons ci ratio: 9.505849e-02	ci left: 1.766219e-02	ci right 1.943570e-02	k: 1668	n:90000
KS ci ratio: 1.545931e-02	ci left: 4.134762e-01	ci right 4.199292e-01	k: 37503	n:90000
PLCG2   90000 perm   26 sec   (3474 perm/sec)   p_kst 4.167000e-01   p_cons 1.853333e-02   p_joint 3.567778e-02

Outputting figure to mutsig2_images.part000000000132/PLCG2.4_3926_90000_0.4167_0.018533_0.035678.png
                gene_name: PLCG2
               theta_stop: 0.095 
                    nperm: 90000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.019 
      ci_cons_bounds_left: 0.018 
     ci_cons_bounds_right: 0.019 
                  p_joint: 0.036 
     ci_joint_bounds_left: 0.034 
    ci_joint_bounds_right: 0.037 

Current progress: 40 percent done.
PLD5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.014019e-02	ci left: 2.295818e-01	ci right 2.463711e-01	k: 2379	n:10000
Cons ci ratio: 4.657119e-02	ci left: 4.049202e-01	ci right 4.243295e-01	k: 4146	n:10000
KS ci ratio: 1.158652e-01	ci left: 9.671912e-02	ci right 1.087134e-01	k: 1026	n:10000
PLD5   10000 perm   2 sec   (5912 perm/sec)   p_kst 1.026000e-01   p_cons 4.146000e-01   p_joint 2.379000e-01

Joint ci ratio: 6.155181e-02	ci left: 1.633853e-01	ci right 1.738113e-01	k: 3371	n:20000
Cons ci ratio: 3.307332e-02	ci left: 4.057154e-01	ci right 4.194100e-01	k: 8251	n:20000
KS ci ratio: 8.635687e-02	ci left: 8.935242e-02	ci right 9.746624e-02	k: 1867	n:20000
PLD5   20000 perm   4 sec   (5216 perm/sec)   p_kst 9.335000e-02   p_cons 4.125500e-01   p_joint 1.685500e-01

Outputting figure to mutsig2_images.part000000000132/PLD5.4_1371_20000_0.09335_0.41255_0.16855.png
                gene_name: PLD5
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.093 
        ci_ks_bounds_left: 0.089 
       ci_ks_bounds_right: 0.097 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 42 percent done.
PLEKHA9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.643706e-02	ci left: 8.433592e-01	ci right 8.574360e-01	k: 8505	n:10000
Cons ci ratio: 3.617512e-02	ci left: 5.301711e-01	ci right 5.498056e-01	k: 5400	n:10000
KS ci ratio: 2.707466e-02	ci left: 6.677342e-01	ci right 6.861626e-01	k: 6770	n:10000
PLEKHA9   10000 perm   2 sec   (6354 perm/sec)   p_kst 6.770000e-01   p_cons 5.400000e-01   p_joint 8.505000e-01

Outputting figure to mutsig2_images.part000000000132/PLEKHA9.4_1180_10000_0.677_0.54_0.8505.png
                gene_name: PLEKHA9
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 43 percent done.
PKN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.118065e-02	ci left: 2.243482e-01	ci right 2.410078e-01	k: 2326	n:10000
Cons ci ratio: 4.383219e-02	ci left: 4.345286e-01	ci right 4.541039e-01	k: 4443	n:10000
KS ci ratio: 8.522827e-02	ci left: 1.671068e-01	ci right 1.820833e-01	k: 1745	n:10000
PKN2   10000 perm   2 sec   (5341 perm/sec)   p_kst 1.745000e-01   p_cons 4.443000e-01   p_joint 2.326000e-01

Outputting figure to mutsig2_images.part000000000132/PKN2.3_3043_10000_0.1745_0.4443_0.2326.png
                gene_name: PKN2
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 45 percent done.
PKNOX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.396016e-02	ci left: 7.191628e-01	ci right 7.367042e-01	k: 7280	n:10000
Cons ci ratio: 4.900521e-02	ci left: 3.805230e-01	ci right 3.997410e-01	k: 3901	n:10000
KS ci ratio: 9.786555e-03	ci left: 9.366165e-01	ci right 9.459244e-01	k: 9414	n:10000
PKNOX1   10000 perm   2 sec   (6376 perm/sec)   p_kst 9.414000e-01   p_cons 3.901000e-01   p_joint 7.280000e-01

Outputting figure to mutsig2_images.part000000000132/PKNOX1.3_1351_10000_0.9414_0.3901_0.728.png
                gene_name: PKNOX1
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 47 percent done.
PKNOX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.036364e-02	ci left: 4.754599e-01	ci right 4.951487e-01	k: 4853	n:10000
Cons ci ratio: 6.411390e-02	ci left: 2.632958e-01	ci right 2.808372e-01	k: 2720	n:10000
KS ci ratio: 3.512495e-02	ci left: 5.447941e-01	ci right 5.643741e-01	k: 5546	n:10000
PKNOX2   10000 perm   2 sec   (6239 perm/sec)   p_kst 5.546000e-01   p_cons 2.720000e-01   p_joint 4.853000e-01

Outputting figure to mutsig2_images.part000000000132/PKNOX2.3_1459_10000_0.5546_0.272_0.4853.png
                gene_name: PKNOX2
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 49 percent done.
PLA2G4C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.687980e-02	ci left: 5.205606e-01	ci right 5.402216e-01	k: 5304	n:10000
Cons ci ratio: 9.457605e-02	ci left: 1.396231e-01	ci right 1.535834e-01	k: 1465	n:10000
KS ci ratio: 3.708756e-02	ci left: 5.177583e-01	ci right 5.374256e-01	k: 5276	n:10000
PLA2G4C   10000 perm   2 sec   (6006 perm/sec)   p_kst 5.276000e-01   p_cons 1.465000e-01   p_joint 5.304000e-01

Outputting figure to mutsig2_images.part000000000132/PLA2G4C.3_1759_10000_0.5276_0.1465_0.5304.png
                gene_name: PLA2G4C
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 51 percent done.
PLA2G4F
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.380079e-02	ci left: 5.637364e-01	ci right 5.832208e-01	k: 5735	n:10000
Cons ci ratio: 1.723711e-02	ci left: 8.306303e-01	ci right 8.451723e-01	k: 8380	n:10000
KS ci ratio: 5.520517e-02	ci left: 3.258476e-01	ci right 3.444485e-01	k: 3351	n:10000
PLA2G4F   10000 perm   2 sec   (5559 perm/sec)   p_kst 3.351000e-01   p_cons 8.380000e-01   p_joint 5.735000e-01

Outputting figure to mutsig2_images.part000000000132/PLA2G4F.3_2630_10000_0.3351_0.838_0.5735.png
                gene_name: PLA2G4F
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 53 percent done.
PLA2G5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.689486e-01	ci left: 1.799971e-02	ci right 2.368423e-02	k: 207	n:10000
Cons ci ratio: 5.567918e-02	ci left: 3.220751e-01	ci right 3.406233e-01	k: 3313	n:10000
KS ci ratio: 3.512569e-01	ci left: 1.014137e-02	ci right 1.454954e-02	k: 122	n:10000
PLA2G5   10000 perm   1 sec   (6899 perm/sec)   p_kst 1.220000e-02   p_cons 3.313000e-01   p_joint 2.070000e-02

Joint ci ratio: 1.890231e-01	ci left: 1.905770e-02	ci right 2.308322e-02	k: 420	n:20000
Cons ci ratio: 4.054138e-02	ci left: 3.120449e-01	ci right 3.250079e-01	k: 6370	n:20000
KS ci ratio: 2.343168e-01	ci left: 1.218208e-02	ci right 1.546151e-02	k: 275	n:20000
PLA2G5   20000 perm   3 sec   (6057 perm/sec)   p_kst 1.375000e-02   p_cons 3.185000e-01   p_joint 2.100000e-02

Joint ci ratio: 1.525583e-01	ci left: 1.988850e-02	ci right 2.320506e-02	k: 645	n:30000
Cons ci ratio: 3.332816e-02	ci left: 3.103091e-01	ci right 3.208599e-01	k: 9467	n:30000
KS ci ratio: 1.939500e-01	ci left: 1.212952e-02	ci right 1.476595e-02	k: 402	n:30000
PLA2G5   30000 perm   5 sec   (5716 perm/sec)   p_kst 1.340000e-02   p_cons 3.155667e-01   p_joint 2.150000e-02

Joint ci ratio: 1.424672e-01	ci left: 1.725026e-02	ci right 1.992028e-02	k: 742	n:40000
Cons ci ratio: 2.897197e-02	ci left: 3.094031e-01	ci right 3.185239e-01	k: 12558	n:40000
KS ci ratio: 1.707803e-01	ci left: 1.188895e-02	ci right 1.413257e-02	k: 519	n:40000
PLA2G5   40000 perm   7 sec   (5499 perm/sec)   p_kst 1.297500e-02   p_cons 3.139500e-01   p_joint 1.855000e-02

Joint ci ratio: 1.337870e-01	ci left: 1.574962e-02	ci right 1.802697e-02	k: 843	n:50000
Cons ci ratio: 2.592265e-02	ci left: 3.097335e-01	ci right 3.178881e-01	k: 15690	n:50000
KS ci ratio: 1.529895e-01	ci left: 1.196775e-02	ci right 1.396939e-02	k: 647	n:50000
PLA2G5   50000 perm   9 sec   (5310 perm/sec)   p_kst 1.294000e-02   p_cons 3.138000e-01   p_joint 1.686000e-02

Joint ci ratio: 1.149912e-01	ci left: 1.790638e-02	ci right 2.010716e-02	k: 1139	n:60000
Cons ci ratio: 2.349495e-02	ci left: 3.131777e-01	ci right 3.206400e-01	k: 19014	n:60000
KS ci ratio: 1.407272e-01	ci left: 1.186757e-02	ci right 1.368001e-02	k: 765	n:60000
PLA2G5   60000 perm   12 sec   (5165 perm/sec)   p_kst 1.275000e-02   p_cons 3.169000e-01   p_joint 1.898333e-02

Joint ci ratio: 1.082591e-01	ci left: 1.738947e-02	ci right 1.939359e-02	k: 1286	n:70000
Cons ci ratio: 2.170279e-02	ci left: 3.144366e-01	ci right 3.213499e-01	k: 22252	n:70000
KS ci ratio: 1.305598e-01	ci left: 1.188359e-02	ci right 1.355717e-02	k: 889	n:70000
PLA2G5   70000 perm   14 sec   (5028 perm/sec)   p_kst 1.270000e-02   p_cons 3.178857e-01   p_joint 1.837143e-02

Joint ci ratio: 1.002259e-01	ci left: 1.782131e-02	ci right 1.971382e-02	k: 1500	n:80000
Cons ci ratio: 2.030930e-02	ci left: 3.144866e-01	ci right 3.209516e-01	k: 25417	n:80000
KS ci ratio: 1.225028e-01	ci left: 1.186279e-02	ci right 1.342286e-02	k: 1010	n:80000
PLA2G5   80000 perm   16 sec   (4905 perm/sec)   p_kst 1.262500e-02   p_cons 3.177125e-01   p_joint 1.875000e-02

Joint ci ratio: 9.497156e-02	ci left: 1.769474e-02	ci right 1.946981e-02	k: 1671	n:90000
Cons ci ratio: 1.916658e-02	ci left: 3.142486e-01	ci right 3.203410e-01	k: 28556	n:90000
KS ci ratio: 1.160862e-01	ci left: 1.178433e-02	ci right 1.324734e-02	k: 1125	n:90000
PLA2G5   90000 perm   19 sec   (4791 perm/sec)   p_kst 1.250000e-02   p_cons 3.172889e-01   p_joint 1.856667e-02

Joint ci ratio: 9.034052e-02	ci left: 1.764447e-02	ci right 1.932362e-02	k: 1847	n:100000
Cons ci ratio: 1.821243e-02	ci left: 3.137074e-01	ci right 3.194832e-01	k: 31659	n:100000
KS ci ratio: 1.102680e-01	ci left: 1.179138e-02	ci right 1.317711e-02	k: 1247	n:100000
PLA2G5   100000 perm   21 sec   (4685 perm/sec)   p_kst 1.247000e-02   p_cons 3.165900e-01   p_joint 1.847000e-02

Joint ci ratio: 8.248601e-02	ci left: 1.928768e-02	ci right 2.095594e-02	k: 2212	n:110000
Cons ci ratio: 1.736524e-02	ci left: 3.138334e-01	ci right 3.193399e-01	k: 34824	n:110000
KS ci ratio: 1.051287e-01	ci left: 1.182521e-02	ci right 1.314614e-02	k: 1372	n:110000
PLA2G5   110000 perm   24 sec   (4584 perm/sec)   p_kst 1.247273e-02   p_cons 3.165818e-01   p_joint 2.010909e-02

Joint ci ratio: 7.835038e-02	ci left: 1.963213e-02	ci right 2.124116e-02	k: 2451	n:120000
Cons ci ratio: 1.660385e-02	ci left: 3.145256e-01	ci right 3.197999e-01	k: 38059	n:120000
KS ci ratio: 1.000067e-01	ci left: 1.200905e-02	ci right 1.328133e-02	k: 1516	n:120000
PLA2G5   120000 perm   27 sec   (4486 perm/sec)   p_kst 1.263333e-02   p_cons 3.171583e-01   p_joint 2.042500e-02

Joint ci ratio: 7.626938e-02	ci left: 1.915526e-02	ci right 2.068165e-02	k: 2588	n:130000
Cons ci ratio: 1.593426e-02	ci left: 3.151233e-01	ci right 3.201925e-01	k: 41295	n:130000
KS ci ratio: 9.618463e-02	ci left: 1.200822e-02	ci right 1.322904e-02	k: 1639	n:130000
PLA2G5   130000 perm   30 sec   (4394 perm/sec)   p_kst 1.260769e-02   p_cons 3.176538e-01   p_joint 1.990769e-02

Outputting figure to mutsig2_images.part000000000132/PLA2G5.3_433_130000_0.012608_0.31765_0.019908.png
                gene_name: PLA2G5
               theta_stop: 0.096 
                    nperm: 130000 
                     p_ks: 0.013 
        ci_ks_bounds_left: 0.012 
       ci_ks_bounds_right: 0.013 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.020 
     ci_joint_bounds_left: 0.019 
    ci_joint_bounds_right: 0.021 

Current progress: 55 percent done.
PLAGL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.044550e-02	ci left: 6.141199e-01	ci right 6.332080e-01	k: 6237	n:10000
Cons ci ratio: 5.004015e-02	ci left: 3.706717e-01	ci right 3.897981e-01	k: 3802	n:10000
KS ci ratio: 4.668649e-02	ci left: 4.037247e-01	ci right 4.231258e-01	k: 4134	n:10000
PLAGL2   10000 perm   2 sec   (5914 perm/sec)   p_kst 4.134000e-01   p_cons 3.802000e-01   p_joint 6.237000e-01

Outputting figure to mutsig2_images.part000000000132/PLAGL2.3_1499_10000_0.4134_0.3802_0.6237.png
                gene_name: PLAGL2
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 57 percent done.
PLBD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.743772e-01	ci left: 4.389243e-02	ci right 5.237330e-02	k: 480	n:10000
Cons ci ratio: 7.064666e-02	ci left: 2.270141e-01	ci right 2.437403e-01	k: 2353	n:10000
KS ci ratio: 2.980694e-01	ci left: 1.446512e-02	ci right 1.962175e-02	k: 169	n:10000
PLBD2   10000 perm   2 sec   (5792 perm/sec)   p_kst 1.690000e-02   p_cons 2.353000e-01   p_joint 4.800000e-02

Joint ci ratio: 1.480826e-01	ci left: 3.133844e-02	ci right 3.639826e-02	k: 676	n:20000
Cons ci ratio: 4.952880e-02	ci left: 2.325575e-01	ci right 2.444186e-01	k: 4769	n:20000
KS ci ratio: 2.018924e-01	ci left: 1.663022e-02	ci right 2.041161e-02	k: 369	n:20000
PLBD2   20000 perm   4 sec   (5124 perm/sec)   p_kst 1.845000e-02   p_cons 2.384500e-01   p_joint 3.380000e-02

Joint ci ratio: 1.462073e-01	ci left: 2.168684e-02	ci right 2.513964e-02	k: 701	n:30000
Cons ci ratio: 4.053321e-02	ci left: 2.328258e-01	ci right 2.424917e-01	k: 7129	n:30000
KS ci ratio: 1.610439e-01	ci left: 1.780522e-02	ci right 2.095549e-02	k: 580	n:30000
PLBD2   30000 perm   6 sec   (4870 perm/sec)   p_kst 1.933333e-02   p_cons 2.376333e-01   p_joint 2.336667e-02

Joint ci ratio: 1.228422e-01	ci left: 2.329805e-02	ci right 2.637146e-02	k: 992	n:40000
Cons ci ratio: 3.505126e-02	ci left: 2.340072e-01	ci right 2.423808e-01	k: 9527	n:40000
KS ci ratio: 1.396219e-01	ci left: 1.797425e-02	ci right 2.069616e-02	k: 772	n:40000
PLBD2   40000 perm   8 sec   (4710 perm/sec)   p_kst 1.930000e-02   p_cons 2.381750e-01   p_joint 2.480000e-02

Joint ci ratio: 1.204596e-01	ci left: 1.948932e-02	ci right 2.200675e-02	k: 1036	n:50000
Cons ci ratio: 3.135601e-02	ci left: 2.343919e-01	ci right 2.418785e-01	k: 11906	n:50000
KS ci ratio: 1.270614e-01	ci left: 1.749189e-02	ci right 1.988446e-02	k: 933	n:50000
PLBD2   50000 perm   11 sec   (4579 perm/sec)   p_kst 1.866000e-02   p_cons 2.381200e-01   p_joint 2.072000e-02

Joint ci ratio: 9.284901e-02	ci left: 2.750887e-02	ci right 3.020363e-02	k: 1730	n:60000
Cons ci ratio: 2.866140e-02	ci left: 2.342486e-01	ci right 2.410768e-01	k: 14259	n:60000
KS ci ratio: 1.165110e-01	ci left: 1.743679e-02	ci right 1.961013e-02	k: 1110	n:60000
PLBD2   60000 perm   13 sec   (4464 perm/sec)   p_kst 1.850000e-02   p_cons 2.376500e-01   p_joint 2.883333e-02

Joint ci ratio: 9.580587e-02	ci left: 2.223698e-02	ci right 2.448849e-02	k: 1634	n:70000
Cons ci ratio: 2.652869e-02	ci left: 2.345931e-01	ci right 2.409144e-01	k: 16642	n:70000
KS ci ratio: 1.080454e-01	ci left: 1.745900e-02	ci right 1.946692e-02	k: 1291	n:70000
PLBD2   70000 perm   16 sec   (4365 perm/sec)   p_kst 1.844286e-02   p_cons 2.377429e-01   p_joint 2.334286e-02

Joint ci ratio: 8.900014e-02	ci left: 2.262030e-02	ci right 2.473944e-02	k: 1893	n:80000
Cons ci ratio: 2.383335e-02	ci left: 2.496790e-01	ci right 2.557139e-01	k: 20215	n:80000
KS ci ratio: 1.006023e-01	ci left: 1.768720e-02	ci right 1.957294e-02	k: 1489	n:80000
PLBD2   80000 perm   19 sec   (4267 perm/sec)   p_kst 1.861250e-02   p_cons 2.526875e-01   p_joint 2.366250e-02

Joint ci ratio: 7.487353e-02	ci left: 2.844782e-02	ci right 3.067152e-02	k: 2659	n:90000
Cons ci ratio: 2.245511e-02	ci left: 2.501069e-01	ci right 2.557979e-01	k: 22765	n:90000
KS ci ratio: 9.771683e-02	ci left: 1.670757e-02	ci right 1.843483e-02	k: 1580	n:90000
PLBD2   90000 perm   22 sec   (4180 perm/sec)   p_kst 1.755556e-02   p_cons 2.529444e-01   p_joint 2.954444e-02

Outputting figure to mutsig2_images.part000000000132/PLBD2.3_1818_90000_0.017556_0.25294_0.029544.png
                gene_name: PLBD2
               theta_stop: 0.098 
                    nperm: 90000 
                     p_ks: 0.018 
        ci_ks_bounds_left: 0.017 
       ci_ks_bounds_right: 0.018 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.030 
     ci_joint_bounds_left: 0.028 
    ci_joint_bounds_right: 0.031 

Current progress: 58 percent done.
PLCG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.947729e-02	ci left: 4.865527e-01	ci right 5.062494e-01	k: 4964	n:10000
Cons ci ratio: 1.162697e-02	ci left: 9.136856e-01	ci right 9.244688e-01	k: 9192	n:10000
KS ci ratio: 6.307811e-02	ci left: 2.697298e-01	ci right 2.873994e-01	k: 2785	n:10000
PLCG1   10000 perm   2 sec   (4937 perm/sec)   p_kst 2.785000e-01   p_cons 9.192000e-01   p_joint 4.964000e-01

Outputting figure to mutsig2_images.part000000000132/PLCG1.3_4004_10000_0.2785_0.9192_0.4964.png
                gene_name: PLCG1
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 60 percent done.
PLCL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.375648e-02	ci left: 8.841132e-01	ci right 8.964584e-01	k: 8904	n:10000
Cons ci ratio: 2.192571e-02	ci left: 7.532242e-01	ci right 7.700231e-01	k: 7617	n:10000
KS ci ratio: 2.054571e-02	ci left: 7.763090e-01	ci right 7.925250e-01	k: 7845	n:10000
PLCL2   10000 perm   2 sec   (5075 perm/sec)   p_kst 7.845000e-01   p_cons 7.617000e-01   p_joint 8.904000e-01

Outputting figure to mutsig2_images.part000000000132/PLCL2.3_3402_10000_0.7845_0.7617_0.8904.png
                gene_name: PLCL2
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.90 

Current progress: 62 percent done.
PLD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.645486e-01	ci left: 4.926618e-02	ci right 5.819605e-02	k: 536	n:10000
Cons ci ratio: 2.166412e-01	ci left: 2.825837e-02	ci right 3.521793e-02	k: 316	n:10000
KS ci ratio: 7.977151e-02	ci left: 1.866835e-01	ci right 2.022949e-01	k: 1944	n:10000
PLD4   10000 perm   2 sec   (5959 perm/sec)   p_kst 1.944000e-01   p_cons 3.160000e-02   p_joint 5.360000e-02

Joint ci ratio: 1.337986e-01	ci left: 3.839058e-02	ci right 4.394383e-02	k: 822	n:20000
Cons ci ratio: 1.633108e-01	ci left: 2.570945e-02	ci right 3.032914e-02	k: 559	n:20000
KS ci ratio: 5.692600e-02	ci left: 1.861658e-01	ci right 1.971240e-01	k: 3832	n:20000
PLD4   20000 perm   4 sec   (5289 perm/sec)   p_kst 1.916000e-01   p_cons 2.795000e-02   p_joint 4.110000e-02

Joint ci ratio: 1.287635e-01	ci left: 2.803403e-02	ci right 3.192436e-02	k: 898	n:30000
Cons ci ratio: 1.331807e-01	ci left: 2.619459e-02	ci right 2.996421e-02	k: 841	n:30000
KS ci ratio: 4.643763e-02	ci left: 1.874572e-01	ci right 1.964025e-01	k: 5757	n:30000
PLD4   30000 perm   6 sec   (5010 perm/sec)   p_kst 1.919000e-01   p_cons 2.803333e-02   p_joint 2.993333e-02

Joint ci ratio: 1.116410e-01	ci left: 2.822835e-02	ci right 3.159035e-02	k: 1195	n:40000
Cons ci ratio: 1.156390e-01	ci left: 2.630795e-02	ci right 2.956107e-02	k: 1116	n:40000
KS ci ratio: 4.029855e-02	ci left: 1.874307e-01	ci right 1.951642e-01	k: 7651	n:40000
PLD4   40000 perm   8 sec   (4840 perm/sec)   p_kst 1.912750e-01   p_cons 2.790000e-02   p_joint 2.987500e-02

Joint ci ratio: 9.279499e-02	ci left: 3.285868e-02	ci right 3.607566e-02	k: 1722	n:50000
Cons ci ratio: 1.030990e-01	ci left: 2.664942e-02	ci right 2.956571e-02	k: 1404	n:50000
KS ci ratio: 3.595819e-02	ci left: 1.885754e-01	ci right 1.955004e-01	k: 9601	n:50000
PLD4   50000 perm   11 sec   (4699 perm/sec)   p_kst 1.920200e-01   p_cons 2.808000e-02   p_joint 3.444000e-02

Joint ci ratio: 7.594394e-02	ci left: 4.089971e-02	ci right 4.414473e-02	k: 2550	n:60000
Cons ci ratio: 9.007367e-02	ci left: 2.921999e-02	ci right 3.199232e-02	k: 1835	n:60000
KS ci ratio: 3.315936e-02	ci left: 1.857747e-01	ci right 1.920554e-01	k: 11334	n:60000
PLD4   60000 perm   13 sec   (4572 perm/sec)   p_kst 1.889000e-01   p_cons 3.058333e-02   p_joint 4.250000e-02

Outputting figure to mutsig2_images.part000000000132/PLD4.3_1561_60000_0.1889_0.030583_0.0425.png
                gene_name: PLD4
               theta_stop: 0.090 
                    nperm: 60000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.031 
      ci_cons_bounds_left: 0.029 
     ci_cons_bounds_right: 0.032 
                  p_joint: 0.043 
     ci_joint_bounds_left: 0.041 
    ci_joint_bounds_right: 0.044 

Current progress: 64 percent done.
PLEK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.441419e-02	ci left: 7.115912e-01	ci right 7.292802e-01	k: 7205	n:10000
Cons ci ratio: 5.278129e-02	ci left: 3.460122e-01	ci right 3.648721e-01	k: 3554	n:10000
KS ci ratio: 3.525308e-02	ci left: 5.429908e-01	ci right 5.625785e-01	k: 5528	n:10000
PLEK   10000 perm   2 sec   (6497 perm/sec)   p_kst 5.528000e-01   p_cons 3.554000e-01   p_joint 7.205000e-01

Outputting figure to mutsig2_images.part000000000132/PLEK.3_1089_10000_0.5528_0.3554_0.7205.png
                gene_name: PLEK
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 66 percent done.
PLEKHA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.944755e-02	ci left: 7.945595e-01	ci right 8.102639e-01	k: 8025	n:10000
KS ci ratio: 1.412697e-02	ci left: 8.786872e-01	ci right 8.912875e-01	k: 8851	n:10000
PLEKHA6   10000 perm   2 sec   (5597 perm/sec)   p_kst 8.851000e-01   p_cons 8.025000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000132/PLEKHA6.3_3227_10000_0.8851_0.8025_1.png
                gene_name: PLEKHA6
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
PLA2G2E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.157396e-01	ci left: 9.691393e-02	ci right 1.089185e-01	k: 1028	n:10000
Cons ci ratio: 6.425987e-02	ci left: 2.624051e-01	ci right 2.799284e-01	k: 2711	n:10000
KS ci ratio: 2.064358e-01	ci left: 3.119896e-02	ci right 3.847528e-02	k: 347	n:10000
PLA2G2E   10000 perm   1 sec   (7225 perm/sec)   p_kst 3.470000e-02   p_cons 2.711000e-01   p_joint 1.028000e-01

Joint ci ratio: 8.105386e-02	ci left: 1.004404e-01	ci right 1.089749e-01	k: 2093	n:20000
Cons ci ratio: 4.549066e-02	ci left: 2.645508e-01	ci right 2.769159e-01	k: 5414	n:20000
KS ci ratio: 1.431237e-01	ci left: 3.355738e-02	ci right 3.877859e-02	k: 722	n:20000
PLA2G2E   20000 perm   3 sec   (6256 perm/sec)   p_kst 3.610000e-02   p_cons 2.707000e-01   p_joint 1.046500e-01

Joint ci ratio: 6.594636e-02	ci left: 1.018812e-01	ci right 1.088621e-01	k: 3160	n:30000
Cons ci ratio: 3.735584e-02	ci left: 2.634579e-01	ci right 2.735203e-01	k: 8054	n:30000
KS ci ratio: 1.150301e-01	ci left: 3.511911e-02	ci right 3.943776e-02	k: 1117	n:30000
PLA2G2E   30000 perm   5 sec   (5885 perm/sec)   p_kst 3.723333e-02   p_cons 2.684667e-01   p_joint 1.053333e-01

Joint ci ratio: 5.701820e-02	ci left: 1.026538e-01	ci right 1.087035e-01	k: 4226	n:40000
Cons ci ratio: 3.224647e-02	ci left: 2.654049e-01	ci right 2.741286e-01	k: 10790	n:40000
KS ci ratio: 1.011324e-01	ci left: 3.436636e-02	ci right 3.805137e-02	k: 1447	n:40000
PLA2G2E   40000 perm   7 sec   (5644 perm/sec)   p_kst 3.617500e-02   p_cons 2.697500e-01   p_joint 1.056500e-01

Joint ci ratio: 5.090586e-02	ci left: 1.033147e-01	ci right 1.087312e-01	k: 5300	n:50000
Cons ci ratio: 2.882129e-02	ci left: 2.661519e-01	ci right 2.739549e-01	k: 13502	n:50000
KS ci ratio: 9.017185e-02	ci left: 3.477538e-02	ci right 3.807872e-02	k: 1820	n:50000
PLA2G2E   50000 perm   9 sec   (5455 perm/sec)   p_kst 3.640000e-02   p_cons 2.700400e-01   p_joint 1.060000e-01

Outputting figure to mutsig2_images.part000000000132/PLA2G2E.2_445_50000_0.0364_0.27004_0.106.png
                gene_name: PLA2G2E
               theta_stop: 0.090 
                    nperm: 50000 
                     p_ks: 0.036 
        ci_ks_bounds_left: 0.035 
       ci_ks_bounds_right: 0.038 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 70 percent done.
PLA2G2F
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.939234e-02	ci left: 7.954727e-01	ci right 8.111502e-01	k: 8034	n:10000
Cons ci ratio: 8.978231e-02	ci left: 1.528644e-01	ci right 1.673342e-01	k: 1600	n:10000
KS ci ratio: 5.740679e-02	ci left: 3.087773e-01	ci right 3.271288e-01	k: 3179	n:10000
PLA2G2F   10000 perm   1 sec   (7092 perm/sec)   p_kst 3.179000e-01   p_cons 1.600000e-01   p_joint 8.034000e-01

Outputting figure to mutsig2_images.part000000000132/PLA2G2F.2_656_10000_0.3179_0.16_0.8034.png
                gene_name: PLA2G2F
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 72 percent done.
PLA2G3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.130935e-02	ci left: 7.635473e-01	ci right 7.800941e-01	k: 7719	n:10000
KS ci ratio: 4.115543e-02	ci left: 4.657702e-01	ci right 4.854441e-01	k: 4756	n:10000
PLA2G3   10000 perm   2 sec   (6338 perm/sec)   p_kst 4.756000e-01   p_cons 7.719000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000132/PLA2G3.2_1558_10000_0.4756_0.7719_1.png
                gene_name: PLA2G3
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 74 percent done.
PLA2G4E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.529986e-02	ci left: 2.561716e-01	ci right 2.735656e-01	k: 2648	n:10000
Cons ci ratio: 7.125468e-03	ci left: 9.644665e-01	ci right 9.714574e-01	k: 9681	n:10000
KS ci ratio: 2.305278e-01	ci left: 2.485465e-02	ci right 3.142409e-02	k: 280	n:10000
PLA2G4E   10000 perm   2 sec   (5684 perm/sec)   p_kst 2.800000e-02   p_cons 9.681000e-01   p_joint 2.648000e-01

Joint ci ratio: 5.266004e-02	ci left: 2.112047e-01	ci right 2.226777e-01	k: 4338	n:20000
Cons ci ratio: 5.035036e-03	ci left: 9.655704e-01	ci right 9.704923e-01	k: 19362	n:20000
KS ci ratio: 1.578823e-01	ci left: 2.753511e-02	ci right 3.230286e-02	k: 597	n:20000
PLA2G4E   20000 perm   4 sec   (5042 perm/sec)   p_kst 2.985000e-02   p_cons 9.681000e-01   p_joint 2.169000e-01

Joint ci ratio: 4.269753e-02	ci left: 2.146285e-01	ci right 2.240259e-01	k: 6579	n:30000
Cons ci ratio: 4.136672e-03	ci left: 9.656369e-01	ci right 9.696719e-01	k: 29031	n:30000
KS ci ratio: 1.263217e-01	ci left: 2.913224e-02	ci right 3.309259e-02	k: 932	n:30000
PLA2G4E   30000 perm   6 sec   (4801 perm/sec)   p_kst 3.106667e-02   p_cons 9.677000e-01   p_joint 2.193000e-01

Joint ci ratio: 3.542718e-02	ci left: 2.301809e-01	ci right 2.385077e-01	k: 9373	n:40000
Cons ci ratio: 3.583493e-03	ci left: 9.658950e-01	ci right 9.693867e-01	k: 38707	n:40000
KS ci ratio: 1.108788e-01	ci left: 2.861754e-02	ci right 3.200110e-02	k: 1211	n:40000
PLA2G4E   40000 perm   9 sec   (4637 perm/sec)   p_kst 3.027500e-02   p_cons 9.676750e-01   p_joint 2.343250e-01

Joint ci ratio: 2.879645e-02	ci left: 2.664903e-01	ci right 2.742964e-01	k: 13519	n:50000
Cons ci ratio: 3.204702e-03	ci left: 9.660925e-01	ci right 9.692129e-01	k: 48384	n:50000
KS ci ratio: 9.934239e-02	ci left: 2.869775e-02	ci right 3.171712e-02	k: 1509	n:50000
PLA2G4E   50000 perm   11 sec   (4510 perm/sec)   p_kst 3.018000e-02   p_cons 9.676800e-01   p_joint 2.703800e-01

Outputting figure to mutsig2_images.part000000000132/PLA2G4E.2_2596_50000_0.03018_0.96768_0.27038.png
                gene_name: PLA2G4E
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.030 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.27 

Current progress: 75 percent done.
PLAG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.553197e-02	ci left: 5.390841e-01	ci right 5.586874e-01	k: 5489	n:10000
Cons ci ratio: 1.769821e-02	ci left: 8.232038e-01	ci right 8.380031e-01	k: 8307	n:10000
KS ci ratio: 3.632097e-02	ci left: 5.281686e-01	ci right 5.478092e-01	k: 5380	n:10000
PLAG1   10000 perm   2 sec   (6417 perm/sec)   p_kst 5.380000e-01   p_cons 8.307000e-01   p_joint 5.489000e-01

Outputting figure to mutsig2_images.part000000000132/PLAG1.2_1511_10000_0.538_0.8307_0.5489.png
                gene_name: PLAG1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 77 percent done.
PLAU
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.581216e-02	ci left: 4.128920e-01	ci right 4.323531e-01	k: 4226	n:10000
Cons ci ratio: 4.542018e-02	ci left: 4.170783e-01	ci right 4.365644e-01	k: 4268	n:10000
KS ci ratio: 5.835992e-02	ci left: 3.017350e-01	ci right 3.199753e-01	k: 3108	n:10000
PLAU   10000 perm   1 sec   (6795 perm/sec)   p_kst 3.108000e-01   p_cons 4.268000e-01   p_joint 4.226000e-01

Outputting figure to mutsig2_images.part000000000132/PLAU.2_1374_10000_0.3108_0.4268_0.4226.png
                gene_name: PLAU
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 79 percent done.
PLAUR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.865703e-02	ci left: 4.970503e-01	ci right 5.167457e-01	k: 5069	n:10000
Cons ci ratio: 5.734068e-02	ci left: 3.092734e-01	ci right 3.276325e-01	k: 3184	n:10000
KS ci ratio: 4.567166e-02	ci left: 4.143870e-01	ci right 4.338572e-01	k: 4241	n:10000
PLAUR   10000 perm   1 sec   (6693 perm/sec)   p_kst 4.241000e-01   p_cons 3.184000e-01   p_joint 5.069000e-01

Outputting figure to mutsig2_images.part000000000132/PLAUR.2_1132_10000_0.4241_0.3184_0.5069.png
                gene_name: PLAUR
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 81 percent done.
PLCH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.752551e+00	ci left: 1.089969e-04	ci right 1.023839e-03	k: 4	n:10000
Cons ci ratio: 1.599773e+00	ci left: 1.623679e-04	ci right 1.166444e-03	k: 5	n:10000
KS ci ratio: 4.668649e-02	ci left: 4.037247e-01	ci right 4.231258e-01	k: 4134	n:10000
PLCH2   10000 perm   2 sec   (4659 perm/sec)   p_kst 4.134000e-01   p_cons 5.000000e-04   p_joint 4.000000e-04

Joint ci ratio: 1.131239e+00	ci left: 2.745890e-04	ci right 9.838883e-04	k: 11	n:20000
Cons ci ratio: 1.011735e+00	ci left: 3.827477e-04	ci right 1.174202e-03	k: 14	n:20000
KS ci ratio: 3.303583e-02	ci left: 4.062640e-01	ci right 4.199613e-01	k: 8262	n:20000
PLCH2   20000 perm   5 sec   (4268 perm/sec)   p_kst 4.131000e-01   p_cons 7.000000e-04   p_joint 5.500000e-04

Joint ci ratio: 8.170495e-01	ci left: 4.596314e-04	ci right 1.110066e-03	k: 22	n:30000
Cons ci ratio: 7.998332e-01	ci left: 4.860610e-04	ci right 1.150156e-03	k: 23	n:30000
KS ci ratio: 2.703576e-02	ci left: 4.064225e-01	ci right 4.175946e-01	k: 12360	n:30000
PLCH2   30000 perm   7 sec   (4103 perm/sec)   p_kst 4.120000e-01   p_cons 7.666667e-04   p_joint 7.333333e-04

Joint ci ratio: 6.530311e-01	ci left: 6.095429e-04	ci right 1.216705e-03	k: 35	n:40000
Cons ci ratio: 7.037711e-01	ci left: 5.060773e-04	ci right 1.070500e-03	k: 30	n:40000
KS ci ratio: 2.339228e-02	ci left: 4.076198e-01	ci right 4.172929e-01	k: 16498	n:40000
PLCH2   40000 perm   10 sec   (4003 perm/sec)   p_kst 4.124500e-01   p_cons 7.500000e-04   p_joint 8.750000e-04

Joint ci ratio: 5.540889e-01	ci left: 7.250946e-04	ci right 1.295407e-03	k: 49	n:50000
Cons ci ratio: 6.046090e-01	ci left: 5.885084e-04	ci right 1.112260e-03	k: 41	n:50000
KS ci ratio: 2.094319e-02	ci left: 4.076610e-01	ci right 4.163092e-01	k: 20599	n:50000
PLCH2   50000 perm   13 sec   (3904 perm/sec)   p_kst 4.119800e-01   p_cons 8.200000e-04   p_joint 9.800000e-04

Joint ci ratio: 4.936101e-01	ci left: 7.923397e-04	ci right 1.324494e-03	k: 62	n:60000
Cons ci ratio: 5.382111e-01	ci left: 6.473338e-04	ci right 1.136365e-03	k: 52	n:60000
KS ci ratio: 1.912105e-02	ci left: 4.079745e-01	ci right 4.158674e-01	k: 24715	n:60000
PLCH2   60000 perm   16 sec   (3831 perm/sec)   p_kst 4.119167e-01   p_cons 8.666667e-04   p_joint 1.033333e-03

Joint ci ratio: 5.190015e-01	ci left: 6.043662e-04	ci right 1.038742e-03	k: 56	n:70000
Cons ci ratio: 5.236187e-01	ci left: 5.919607e-04	ci right 1.022594e-03	k: 55	n:70000
KS ci ratio: 1.772685e-02	ci left: 4.076086e-01	ci right 4.149131e-01	k: 28788	n:70000
PLCH2   70000 perm   19 sec   (3752 perm/sec)   p_kst 4.112571e-01   p_cons 7.857143e-04   p_joint 8.000000e-04

Joint ci ratio: 4.860156e-01	ci left: 6.161503e-04	ci right 1.021469e-03	k: 64	n:80000
Cons ci ratio: 4.898009e-01	ci left: 6.051880e-04	ci right 1.007444e-03	k: 63	n:80000
KS ci ratio: 1.651608e-02	ci left: 4.097723e-01	ci right 4.166090e-01	k: 33055	n:80000
PLCH2   80000 perm   22 sec   (3687 perm/sec)   p_kst 4.131875e-01   p_cons 7.875000e-04   p_joint 8.000000e-04

Joint ci ratio: 4.717290e-01	ci left: 5.867647e-04	ci right 9.577498e-04	k: 68	n:90000
Cons ci ratio: 4.717290e-01	ci left: 5.867647e-04	ci right 9.577498e-04	k: 68	n:90000
KS ci ratio: 1.558865e-02	ci left: 4.094365e-01	ci right 4.158803e-01	k: 37139	n:90000
PLCH2   90000 perm   25 sec   (3621 perm/sec)   p_kst 4.126556e-01   p_cons 7.555556e-04   p_joint 7.555556e-04

Joint ci ratio: 4.327119e-01	ci left: 6.433073e-04	ci right 1.006657e-03	k: 81	n:100000
Cons ci ratio: 4.327119e-01	ci left: 6.433073e-04	ci right 1.006657e-03	k: 81	n:100000
KS ci ratio: 1.478370e-02	ci left: 4.097661e-01	ci right 4.158790e-01	k: 41282	n:100000
PLCH2   100000 perm   28 sec   (3568 perm/sec)   p_kst 4.128200e-01   p_cons 8.100000e-04   p_joint 8.100000e-04

Joint ci ratio: 4.107558e-01	ci left: 6.579645e-04	ci right 1.005590e-03	k: 90	n:110000
Cons ci ratio: 4.107558e-01	ci left: 6.579645e-04	ci right 1.005590e-03	k: 90	n:110000
KS ci ratio: 1.408231e-02	ci left: 4.103696e-01	ci right 4.161986e-01	k: 45461	n:110000
PLCH2   110000 perm   31 sec   (3507 perm/sec)   p_kst 4.132818e-01   p_cons 8.181818e-04   p_joint 8.181818e-04

Joint ci ratio: 3.958164e-01	ci left: 6.555513e-04	ci right 9.860105e-04	k: 97	n:120000
Cons ci ratio: 3.918350e-01	ci left: 6.705683e-04	ci right 1.004318e-03	k: 99	n:120000
KS ci ratio: 1.345385e-02	ci left: 4.115358e-01	ci right 4.171183e-01	k: 49719	n:120000
PLCH2   120000 perm   35 sec   (3452 perm/sec)   p_kst 4.143250e-01   p_cons 8.250000e-04   p_joint 8.083333e-04

Joint ci ratio: 3.805873e-01	ci left: 6.606583e-04	ci right 9.776776e-04	k: 105	n:130000
Cons ci ratio: 3.735977e-01	ci left: 6.885132e-04	ci right 1.011347e-03	k: 109	n:130000
KS ci ratio: 1.292692e-02	ci left: 4.116126e-01	ci right 4.169758e-01	k: 53858	n:130000
PLCH2   130000 perm   38 sec   (3392 perm/sec)   p_kst 4.142923e-01   p_cons 8.384615e-04   p_joint 8.076923e-04

Joint ci ratio: 3.719211e-01	ci left: 6.458045e-04	ci right 9.469218e-04	k: 110	n:140000
Cons ci ratio: 3.622514e-01	ci left: 6.847114e-04	ci right 9.937104e-04	k: 116	n:140000
KS ci ratio: 1.246495e-02	ci left: 4.113896e-01	ci right 4.165568e-01	k: 57956	n:140000
PLCH2   140000 perm   42 sec   (3343 perm/sec)   p_kst 4.139714e-01   p_cons 8.285714e-04   p_joint 7.857143e-04

Joint ci ratio: 3.654005e-01	ci left: 6.269459e-04	ci right 9.129223e-04	k: 114	n:150000
Cons ci ratio: 3.562187e-01	ci left: 6.633226e-04	ci right 9.565290e-04	k: 120	n:150000
KS ci ratio: 1.203795e-02	ci left: 4.116523e-01	ci right 4.166444e-01	k: 62122	n:150000
PLCH2   150000 perm   46 sec   (3293 perm/sec)   p_kst 4.141467e-01   p_cons 8.000000e-04   p_joint 7.600000e-04

Joint ci ratio: 3.577101e-01	ci left: 6.161726e-04	ci right 8.899427e-04	k: 119	n:160000
Cons ci ratio: 3.490827e-01	ci left: 6.503462e-04	ci right 9.307545e-04	k: 125	n:160000
KS ci ratio: 1.164977e-02	ci left: 4.119784e-01	ci right 4.168122e-01	k: 66303	n:160000
PLCH2   160000 perm   49 sec   (3245 perm/sec)   p_kst 4.143938e-01   p_cons 7.812500e-04   p_joint 7.437500e-04

Joint ci ratio: 3.477128e-01	ci left: 6.174562e-04	ci right 8.824027e-04	k: 126	n:170000
Cons ci ratio: 3.410587e-01	ci left: 6.443260e-04	ci right 9.143458e-04	k: 131	n:170000
KS ci ratio: 1.130481e-02	ci left: 4.119275e-01	ci right 4.166166e-01	k: 70426	n:170000
PLCH2   170000 perm   53 sec   (3199 perm/sec)   p_kst 4.142706e-01   p_cons 7.705882e-04   p_joint 7.411765e-04

Joint ci ratio: 3.372524e-01	ci left: 6.237762e-04	ci right 8.816317e-04	k: 134	n:180000
Cons ci ratio: 3.311707e-01	ci left: 6.492248e-04	ci right 9.117295e-04	k: 139	n:180000
KS ci ratio: 1.098766e-02	ci left: 4.119341e-01	ci right 4.164908e-01	k: 74558	n:180000
PLCH2   180000 perm   57 sec   (3151 perm/sec)   p_kst 4.142111e-01   p_cons 7.722222e-04   p_joint 7.444444e-04

Joint ci ratio: 3.059676e-01	ci left: 7.312920e-04	ci right 1.000103e-03	k: 163	n:190000
Cons ci ratio: 3.220956e-01	ci left: 6.537088e-04	ci right 9.092887e-04	k: 147	n:190000
KS ci ratio: 1.068430e-02	ci left: 4.124624e-01	ci right 4.168981e-01	k: 78789	n:190000
PLCH2   190000 perm   61 sec   (3107 perm/sec)   p_kst 4.146789e-01   p_cons 7.736842e-04   p_joint 8.578947e-04

Joint ci ratio: 2.970444e-01	ci left: 7.409467e-04	ci right 1.003867e-03	k: 173	n:200000
Cons ci ratio: 3.117345e-01	ci left: 6.670484e-04	ci right 9.177861e-04	k: 157	n:200000
KS ci ratio: 1.041032e-02	ci left: 4.126795e-01	ci right 4.170030e-01	k: 82968	n:200000
PLCH2   200000 perm   65 sec   (3063 perm/sec)   p_kst 4.148400e-01   p_cons 7.850000e-04   p_joint 8.650000e-04

Joint ci ratio: 2.896478e-01	ci left: 7.453680e-04	ci right 1.002065e-03	k: 182	n:210000
Cons ci ratio: 3.041300e-01	ci left: 6.704367e-04	ci right 9.151111e-04	k: 165	n:210000
KS ci ratio: 1.014743e-02	ci left: 4.133054e-01	ci right 4.175255e-01	k: 87237	n:210000
PLCH2   210000 perm   70 sec   (3021 perm/sec)   p_kst 4.154143e-01   p_cons 7.857143e-04   p_joint 8.666667e-04

Joint ci ratio: 2.813148e-01	ci left: 7.579093e-04	ci right 1.010086e-03	k: 193	n:220000
Cons ci ratio: 2.953622e-01	ci left: 6.820002e-04	ci right 9.223763e-04	k: 175	n:220000
KS ci ratio: 9.909780e-03	ci left: 4.135668e-01	ci right 4.176900e-01	k: 91438	n:220000
PLCH2   220000 perm   74 sec   (2983 perm/sec)   p_kst 4.156273e-01   p_cons 7.954545e-04   p_joint 8.772727e-04

Joint ci ratio: 2.750080e-01	ci left: 7.613584e-04	ci right 1.008021e-03	k: 202	n:230000
Cons ci ratio: 2.888700e-01	ci left: 6.845825e-04	ci right 9.195967e-04	k: 183	n:230000
KS ci ratio: 9.691810e-03	ci left: 4.136196e-01	ci right 4.176521e-01	k: 95596	n:230000
PLCH2   230000 perm   78 sec   (2943 perm/sec)   p_kst 4.156348e-01   p_cons 7.956522e-04   p_joint 8.782609e-04

Joint ci ratio: 2.703868e-01	ci left: 7.568076e-04	ci right 9.971767e-04	k: 209	n:240000
Cons ci ratio: 2.835278e-01	ci left: 6.831316e-04	ci right 9.125348e-04	k: 190	n:240000
KS ci ratio: 9.492095e-03	ci left: 4.134399e-01	ci right 4.173871e-01	k: 99699	n:240000
PLCH2   240000 perm   83 sec   (2906 perm/sec)   p_kst 4.154125e-01   p_cons 7.916667e-04   p_joint 8.708333e-04

Joint ci ratio: 2.659909e-01	ci left: 7.526526e-04	ci right 9.871682e-04	k: 216	n:250000
Cons ci ratio: 2.791778e-01	ci left: 6.781129e-04	ci right 9.017228e-04	k: 196	n:250000
KS ci ratio: 9.301171e-03	ci left: 4.134353e-01	ci right 4.173027e-01	k: 103842	n:250000
PLCH2   250000 perm   87 sec   (2869 perm/sec)   p_kst 4.153680e-01   p_cons 7.840000e-04   p_joint 8.640000e-04

Joint ci ratio: 2.600654e-01	ci left: 7.596308e-04	ci right 9.901912e-04	k: 226	n:260000
Cons ci ratio: 2.736762e-01	ci left: 6.806686e-04	ci right 8.999374e-04	k: 204	n:260000
KS ci ratio: 9.114897e-03	ci left: 4.137739e-01	ci right 4.175665e-01	k: 108074	n:260000
PLCH2   260000 perm   92 sec   (2832 perm/sec)   p_kst 4.156692e-01   p_cons 7.846154e-04   p_joint 8.692308e-04

Joint ci ratio: 2.572495e-01	ci left: 7.488137e-04	ci right 9.732348e-04	k: 231	n:270000
Cons ci ratio: 2.710466e-01	ci left: 6.692613e-04	ci right 8.824313e-04	k: 208	n:270000
KS ci ratio: 8.939447e-03	ci left: 4.140844e-01	ci right 4.178063e-01	k: 112305	n:270000
PLCH2   270000 perm   97 sec   (2798 perm/sec)   p_kst 4.159444e-01   p_cons 7.703704e-04   p_joint 8.555556e-04

Joint ci ratio: 2.723576e-01	ci left: 6.387013e-04	ci right 8.432898e-04	k: 206	n:280000
Cons ci ratio: 2.672386e-01	ci left: 6.653417e-04	ci right 8.737872e-04	k: 214	n:280000
KS ci ratio: 8.776393e-03	ci left: 4.142270e-01	ci right 4.178819e-01	k: 116495	n:280000
PLCH2   280000 perm   101 sec   (2763 perm/sec)   p_kst 4.160536e-01   p_cons 7.642857e-04   p_joint 7.357143e-04

Joint ci ratio: 2.678663e-01	ci left: 6.391807e-04	ci right 8.399794e-04	k: 213	n:290000
Cons ci ratio: 2.635868e-01	ci left: 6.617118e-04	ci right 8.657200e-04	k: 220	n:290000
KS ci ratio: 8.621580e-03	ci left: 4.143810e-01	ci right 4.179724e-01	k: 120691	n:290000
PLCH2   290000 perm   106 sec   (2731 perm/sec)   p_kst 4.161759e-01   p_cons 7.586207e-04   p_joint 7.344828e-04

Joint ci ratio: 2.453752e-01	ci left: 7.457730e-04	ci right 9.573944e-04	k: 254	n:300000
Cons ci ratio: 2.595092e-01	ci left: 6.614585e-04	ci right 8.617223e-04	k: 227	n:300000
KS ci ratio: 8.473983e-03	ci left: 4.145652e-01	ci right 4.180964e-01	k: 124899	n:300000
PLCH2   300000 perm   111 sec   (2699 perm/sec)   p_kst 4.163300e-01   p_cons 7.566667e-04   p_joint 8.466667e-04

Joint ci ratio: 2.397964e-01	ci left: 7.580734e-04	ci right 9.675678e-04	k: 266	n:310000
Cons ci ratio: 2.534655e-01	ci left: 6.733248e-04	ci right 8.716839e-04	k: 238	n:310000
KS ci ratio: 8.338086e-03	ci left: 4.144833e-01	ci right 4.179570e-01	k: 129028	n:310000
PLCH2   310000 perm   116 sec   (2666 perm/sec)   p_kst 4.162194e-01   p_cons 7.677419e-04   p_joint 8.580645e-04

Joint ci ratio: 2.350035e-01	ci left: 7.667146e-04	ci right 9.737465e-04	k: 277	n:320000
Cons ci ratio: 2.488234e-01	ci left: 6.786386e-04	ci right 8.743349e-04	k: 247	n:320000
KS ci ratio: 8.204934e-03	ci left: 4.146194e-01	ci right 4.180384e-01	k: 133225	n:320000
PLCH2   320000 perm   121 sec   (2637 perm/sec)   p_kst 4.163281e-01   p_cons 7.718750e-04   p_joint 8.656250e-04

Joint ci ratio: 2.316936e-01	ci left: 7.663061e-04	ci right 9.698962e-04	k: 285	n:330000
Cons ci ratio: 2.449046e-01	ci left: 6.808167e-04	ci right 8.735789e-04	k: 255	n:330000
KS ci ratio: 8.080482e-03	ci left: 4.145962e-01	ci right 4.179629e-01	k: 137372	n:330000
PLCH2   330000 perm   127 sec   (2606 perm/sec)   p_kst 4.162788e-01   p_cons 7.727273e-04   p_joint 8.636364e-04

Joint ci ratio: 2.304899e-01	ci left: 7.520798e-04	ci right 9.507042e-04	k: 288	n:340000
Cons ci ratio: 2.439556e-01	ci left: 6.663141e-04	ci right 8.541282e-04	k: 257	n:340000
KS ci ratio: 7.963165e-03	ci left: 4.144748e-01	ci right 4.177914e-01	k: 141485	n:340000
PLCH2   340000 perm   132 sec   (2577 perm/sec)   p_kst 4.161324e-01   p_cons 7.558824e-04   p_joint 8.470588e-04

Joint ci ratio: 2.281347e-01	ci left: 7.467497e-04	ci right 9.416675e-04	k: 294	n:350000
Cons ci ratio: 2.416264e-01	ci left: 6.606930e-04	ci right 8.448781e-04	k: 262	n:350000
KS ci ratio: 7.848597e-03	ci left: 4.144977e-01	ci right 4.177665e-01	k: 145646	n:350000
PLCH2   350000 perm   137 sec   (2549 perm/sec)   p_kst 4.161314e-01   p_cons 7.485714e-04   p_joint 8.400000e-04

Joint ci ratio: 2.420899e-01	ci left: 6.397301e-04	ci right 8.184647e-04	k: 261	n:360000
Cons ci ratio: 2.389170e-01	ci left: 6.580037e-04	ci right 8.390776e-04	k: 268	n:360000
KS ci ratio: 7.741314e-03	ci left: 4.143642e-01	ci right 4.175871e-01	k: 149751	n:360000
PLCH2   360000 perm   143 sec   (2520 perm/sec)   p_kst 4.159750e-01   p_cons 7.444444e-04   p_joint 7.250000e-04

Joint ci ratio: 2.232694e-01	ci left: 7.395334e-04	ci right 9.278852e-04	k: 307	n:370000
Cons ci ratio: 2.367278e-01	ci left: 6.529279e-04	ci right 8.307173e-04	k: 273	n:370000
KS ci ratio: 7.635126e-03	ci left: 4.144408e-01	ci right 4.176199e-01	k: 153931	n:370000
PLCH2   370000 perm   148 sec   (2493 perm/sec)   p_kst 4.160297e-01   p_cons 7.378378e-04   p_joint 8.297297e-04

Joint ci ratio: 2.211267e-01	ci left: 7.349826e-04	ci right 9.201342e-04	k: 313	n:380000
Cons ci ratio: 2.341782e-01	ci left: 6.506036e-04	ci right 8.255757e-04	k: 279	n:380000
KS ci ratio: 7.531641e-03	ci left: 4.146137e-01	ci right 4.177508e-01	k: 158149	n:380000
PLCH2   380000 perm   154 sec   (2466 perm/sec)   p_kst 4.161816e-01   p_cons 7.342105e-04   p_joint 8.236842e-04

Joint ci ratio: 2.183626e-01	ci left: 7.355207e-04	ci right 9.181811e-04	k: 321	n:390000
Cons ci ratio: 2.317092e-01	ci left: 6.484082e-04	ci right 8.206881e-04	k: 285	n:390000
KS ci ratio: 7.440257e-03	ci left: 4.142551e-01	ci right 4.173513e-01	k: 162163	n:390000
PLCH2   390000 perm   160 sec   (2438 perm/sec)   p_kst 4.158026e-01   p_cons 7.307692e-04   p_joint 8.230769e-04

Joint ci ratio: 2.160274e-01	ci left: 7.336807e-04	ci right 9.136772e-04	k: 328	n:400000
Cons ci ratio: 2.301066e-01	ci left: 6.416193e-04	ci right 8.107487e-04	k: 289	n:400000
KS ci ratio: 7.347726e-03	ci left: 4.142045e-01	ci right 4.172617e-01	k: 166293	n:400000
PLCH2   400000 perm   166 sec   (2412 perm/sec)   p_kst 4.157325e-01   p_cons 7.225000e-04   p_joint 8.200000e-04

Joint ci ratio: 2.140847e-01	ci left: 7.296319e-04	ci right 9.068138e-04	k: 334	n:410000
Cons ci ratio: 2.277628e-01	ci left: 6.397648e-04	ci right 8.064465e-04	k: 295	n:410000
KS ci ratio: 7.261880e-03	ci left: 4.139349e-01	ci right 4.169541e-01	k: 170332	n:410000
PLCH2   410000 perm   172 sec   (2386 perm/sec)   p_kst 4.154439e-01   p_cons 7.195122e-04   p_joint 8.146341e-04

Joint ci ratio: 2.128190e-01	ci left: 7.212740e-04	ci right 8.952556e-04	k: 338	n:420000
Cons ci ratio: 2.262402e-01	ci left: 6.335144e-04	ci right 7.973102e-04	k: 299	n:420000
KS ci ratio: 7.178162e-03	ci left: 4.137330e-01	ci right 4.167158e-01	k: 174394	n:420000
PLCH2   420000 perm   178 sec   (2362 perm/sec)   p_kst 4.152238e-01   p_cons 7.119048e-04   p_joint 8.047619e-04

Joint ci ratio: 2.100488e-01	ci left: 7.243224e-04	ci right 8.964724e-04	k: 347	n:430000
Cons ci ratio: 2.232825e-01	ci left: 6.363388e-04	ci right 7.984183e-04	k: 307	n:430000
KS ci ratio: 7.095198e-03	ci left: 4.136824e-01	ci right 4.166303e-01	k: 178517	n:430000
PLCH2   430000 perm   184 sec   (2337 perm/sec)   p_kst 4.151558e-01   p_cons 7.139535e-04   p_joint 8.069767e-04

Joint ci ratio: 2.082616e-01	ci left: 7.207825e-04	ci right 8.904478e-04	k: 353	n:440000
Cons ci ratio: 2.214924e-01	ci left: 6.326071e-04	ci right 7.922682e-04	k: 312	n:440000
KS ci ratio: 7.014454e-03	ci left: 4.136753e-01	ci right 4.165895e-01	k: 182658	n:440000
PLCH2   440000 perm   190 sec   (2313 perm/sec)   p_kst 4.151318e-01   p_cons 7.090909e-04   p_joint 8.022727e-04

Joint ci ratio: 2.062328e-01	ci left: 7.195133e-04	ci right 8.870219e-04	k: 360	n:450000
Cons ci ratio: 2.193998e-01	ci left: 6.311463e-04	ci right 7.887307e-04	k: 318	n:450000
KS ci ratio: 6.933614e-03	ci left: 4.138641e-01	ci right 4.167459e-01	k: 186887	n:450000
PLCH2   450000 perm   196 sec   (2291 perm/sec)   p_kst 4.153044e-01   p_cons 7.066667e-04   p_joint 8.000000e-04

Joint ci ratio: 2.042622e-01	ci left: 7.183070e-04	ci right 8.837373e-04	k: 367	n:460000
Cons ci ratio: 2.180378e-01	ci left: 6.256448e-04	ci right 7.807559e-04	k: 322	n:460000
KS ci ratio: 6.856977e-03	ci left: 4.139406e-01	ci right 4.167909e-01	k: 191068	n:460000
PLCH2   460000 perm   203 sec   (2267 perm/sec)   p_kst 4.153652e-01   p_cons 7.000000e-04   p_joint 7.978261e-04

Joint ci ratio: 2.023469e-01	ci left: 7.171593e-04	ci right 8.805852e-04	k: 374	n:470000
Cons ci ratio: 2.157129e-01	ci left: 6.264179e-04	ci right 7.798454e-04	k: 329	n:470000
KS ci ratio: 6.782499e-03	ci left: 4.140374e-01	ci right 4.168573e-01	k: 195260	n:470000
PLCH2   470000 perm   209 sec   (2245 perm/sec)   p_kst 4.154468e-01   p_cons 7.000000e-04   p_joint 7.957447e-04

Joint ci ratio: 2.010119e-01	ci left: 7.121089e-04	ci right 8.731820e-04	k: 379	n:480000
Cons ci ratio: 2.144180e-01	ci left: 6.212518e-04	ci right 7.723804e-04	k: 333	n:480000
KS ci ratio: 6.711346e-03	ci left: 4.140616e-01	ci right 4.168519e-01	k: 199419	n:480000
PLCH2   480000 perm   216 sec   (2223 perm/sec)   p_kst 4.154563e-01   p_cons 6.937500e-04   p_joint 7.895833e-04

Joint ci ratio: 1.989288e-01	ci left: 7.130852e-04	ci right 8.725048e-04	k: 387	n:490000
Cons ci ratio: 2.122058e-01	ci left: 6.220958e-04	ci right 7.716653e-04	k: 340	n:490000
KS ci ratio: 6.643419e-03	ci left: 4.140095e-01	ci right 4.167711e-01	k: 203541	n:490000
PLCH2   490000 perm   223 sec   (2202 perm/sec)   p_kst 4.153898e-01   p_cons 6.938776e-04   p_joint 7.897959e-04

Joint ci ratio: 1.971585e-01	ci left: 7.121292e-04	ci right 8.697481e-04	k: 394	n:500000
Cons ci ratio: 2.100607e-01	ci left: 6.229137e-04	ci right 7.709711e-04	k: 347	n:500000
KS ci ratio: 6.578002e-03	ci left: 4.139236e-01	ci right 4.166574e-01	k: 207645	n:500000
PLCH2   500000 perm   229 sec   (2180 perm/sec)   p_kst 4.152900e-01   p_cons 6.940000e-04   p_joint 7.880000e-04

Joint ci ratio: 1.947088e-01	ci left: 7.168121e-04	ci right 8.732625e-04	k: 404	n:510000
Cons ci ratio: 2.076869e-01	ci left: 6.255656e-04	ci right 7.723595e-04	k: 355	n:510000
KS ci ratio: 6.514505e-03	ci left: 4.138393e-01	ci right 4.165460e-01	k: 211748	n:510000
PLCH2   510000 perm   236 sec   (2159 perm/sec)   p_kst 4.151922e-01   p_cons 6.960784e-04   p_joint 7.921569e-04

Joint ci ratio: 1.937551e-01	ci left: 7.103453e-04	ci right 8.645353e-04	k: 408	n:520000
Cons ci ratio: 2.065304e-01	ci left: 6.208287e-04	ci right 7.655974e-04	k: 359	n:520000
KS ci ratio: 6.451841e-03	ci left: 4.138314e-01	ci right 4.165119e-01	k: 215889	n:520000
PLCH2   520000 perm   243 sec   (2139 perm/sec)   p_kst 4.151712e-01   p_cons 6.903846e-04   p_joint 7.846154e-04

Joint ci ratio: 1.916577e-01	ci left: 7.131045e-04	ci right 8.660225e-04	k: 417	n:530000
Cons ci ratio: 2.042730e-01	ci left: 6.234331e-04	ci right 7.670216e-04	k: 367	n:530000
KS ci ratio: 6.390678e-03	ci left: 4.138446e-01	ci right 4.164997e-01	k: 220041	n:530000
PLCH2   530000 perm   250 sec   (2119 perm/sec)   p_kst 4.151717e-01   p_cons 6.924528e-04   p_joint 7.867925e-04

Joint ci ratio: 1.885255e-01	ci left: 7.245915e-04	ci right 8.771428e-04	k: 431	n:540000
Cons ci ratio: 2.010208e-01	ci left: 6.329830e-04	ci right 7.761654e-04	k: 379	n:540000
KS ci ratio: 6.332816e-03	ci left: 4.137353e-01	ci right 4.163656e-01	k: 224127	n:540000
PLCH2   540000 perm   257 sec   (2099 perm/sec)   p_kst 4.150500e-01   p_cons 7.018519e-04   p_joint 7.981481e-04

Joint ci ratio: 1.868037e-01	ci left: 7.252792e-04	ci right 8.764227e-04	k: 439	n:550000
Cons ci ratio: 1.994525e-01	ci left: 6.318364e-04	ci right 7.735087e-04	k: 385	n:550000
KS ci ratio: 6.273630e-03	ci left: 4.138518e-01	ci right 4.164581e-01	k: 228335	n:550000
PLCH2   550000 perm   264 sec   (2080 perm/sec)   p_kst 4.151545e-01   p_cons 7.000000e-04   p_joint 7.981818e-04

Joint ci ratio: 1.843067e-01	ci left: 7.327613e-04	ci right 8.831948e-04	k: 451	n:560000
Cons ci ratio: 1.966692e-01	ci left: 6.392226e-04	ci right 7.803114e-04	k: 396	n:560000
KS ci ratio: 6.215456e-03	ci left: 4.140125e-01	ci right 4.165955e-01	k: 232570	n:560000
PLCH2   560000 perm   272 sec   (2061 perm/sec)   p_kst 4.153036e-01   p_cons 7.071429e-04   p_joint 8.053571e-04

Joint ci ratio: 1.826970e-01	ci left: 7.332963e-04	ci right 8.823792e-04	k: 459	n:570000
Cons ci ratio: 1.949580e-01	ci left: 6.396868e-04	ci right 7.795037e-04	k: 403	n:570000
KS ci ratio: 6.161006e-03	ci left: 4.139993e-01	ci right 4.165595e-01	k: 236709	n:570000
PLCH2   570000 perm   279 sec   (2042 perm/sec)   p_kst 4.152789e-01   p_cons 7.070175e-04   p_joint 8.052632e-04

Joint ci ratio: 1.811288e-01	ci left: 7.338183e-04	ci right 8.815862e-04	k: 467	n:580000
Cons ci ratio: 1.932907e-01	ci left: 6.401402e-04	ci right 7.787188e-04	k: 410	n:580000
KS ci ratio: 6.106770e-03	ci left: 4.140814e-01	ci right 4.166195e-01	k: 240903	n:580000
PLCH2   580000 perm   287 sec   (2024 perm/sec)   p_kst 4.153500e-01   p_cons 7.068966e-04   p_joint 8.051724e-04

Joint ci ratio: 1.796003e-01	ci left: 7.343279e-04	ci right 8.808149e-04	k: 475	n:590000
Cons ci ratio: 1.916654e-01	ci left: 6.405831e-04	ci right 7.779556e-04	k: 417	n:590000
KS ci ratio: 6.053434e-03	ci left: 4.142014e-01	ci right 4.167180e-01	k: 245121	n:590000
PLCH2   590000 perm   294 sec   (2006 perm/sec)   p_kst 4.154593e-01   p_cons 7.067797e-04   p_joint 8.050847e-04

Joint ci ratio: 1.779259e-01	ci left: 7.364180e-04	ci right 8.818051e-04	k: 484	n:600000
Cons ci ratio: 1.898570e-01	ci left: 6.426033e-04	ci right 7.789589e-04	k: 425	n:600000
KS ci ratio: 6.003325e-03	ci left: 4.141677e-01	ci right 4.166632e-01	k: 249249	n:600000
PLCH2   600000 perm   302 sec   (1989 perm/sec)   p_kst 4.154150e-01   p_cons 7.083333e-04   p_joint 8.066667e-04

Joint ci ratio: 1.766558e-01	ci left: 7.353117e-04	ci right 8.793334e-04	k: 491	n:610000
Cons ci ratio: 1.885341e-01	ci left: 6.414390e-04	ci right 7.764906e-04	k: 431	n:610000
KS ci ratio: 5.954721e-03	ci left: 4.141121e-01	ci right 4.165870e-01	k: 253363	n:610000
PLCH2   610000 perm   309 sec   (1971 perm/sec)   p_kst 4.153492e-01   p_cons 7.065574e-04   p_joint 8.049180e-04

Joint ci ratio: 1.750618e-01	ci left: 7.373291e-04	ci right 8.803050e-04	k: 500	n:620000
Cons ci ratio: 1.868122e-01	ci left: 6.433903e-04	ci right 7.774752e-04	k: 439	n:620000
KS ci ratio: 5.906337e-03	ci left: 4.141359e-01	ci right 4.165907e-01	k: 257525	n:620000
PLCH2   620000 perm   317 sec   (1954 perm/sec)   p_kst 4.153629e-01   p_cons 7.080645e-04   p_joint 8.064516e-04

Joint ci ratio: 1.735101e-01	ci left: 7.392880e-04	ci right 8.812401e-04	k: 509	n:630000
Cons ci ratio: 1.851366e-01	ci left: 6.452850e-04	ci right 7.784232e-04	k: 447	n:630000
KS ci ratio: 5.858884e-03	ci left: 4.141780e-01	ci right 4.166133e-01	k: 261699	n:630000
PLCH2   630000 perm   325 sec   (1937 perm/sec)   p_kst 4.153952e-01   p_cons 7.095238e-04   p_joint 8.079365e-04

Joint ci ratio: 1.719990e-01	ci left: 7.411912e-04	ci right 8.821406e-04	k: 518	n:640000
Cons ci ratio: 1.833042e-01	ci left: 6.486166e-04	ci right 7.809704e-04	k: 456	n:640000
KS ci ratio: 5.812950e-03	ci left: 4.141860e-01	ci right 4.166022e-01	k: 265852	n:640000
PLCH2   640000 perm   333 sec   (1921 perm/sec)   p_kst 4.153938e-01   p_cons 7.125000e-04   p_joint 8.093750e-04

Joint ci ratio: 1.713405e-01	ci left: 7.356775e-04	ci right 8.749874e-04	k: 522	n:650000
Cons ci ratio: 1.825077e-01	ci left: 6.445098e-04	ci right 7.753910e-04	k: 460	n:650000
KS ci ratio: 5.769797e-03	ci left: 4.140494e-01	ci right 4.164468e-01	k: 269911	n:650000
PLCH2   650000 perm   341 sec   (1904 perm/sec)   p_kst 4.152477e-01   p_cons 7.076923e-04   p_joint 8.030769e-04

Joint ci ratio: 1.710146e-01	ci left: 7.274311e-04	ci right 8.648904e-04	k: 524	n:660000
Cons ci ratio: 1.821138e-01	ci left: 6.376363e-04	ci right 7.668114e-04	k: 462	n:660000
KS ci ratio: 5.726911e-03	ci left: 4.139745e-01	ci right 4.163535e-01	k: 274008	n:660000
PLCH2   660000 perm   350 sec   (1888 perm/sec)   p_kst 4.151636e-01   p_cons 7.000000e-04   p_joint 7.939394e-04

Joint ci ratio: 1.697264e-01	ci left: 7.280051e-04	ci right 8.644305e-04	k: 532	n:670000
Cons ci ratio: 1.807526e-01	ci left: 6.380927e-04	ci right 7.662881e-04	k: 469	n:670000
KS ci ratio: 5.684565e-03	ci left: 4.139362e-01	ci right 4.162974e-01	k: 278128	n:670000
PLCH2   670000 perm   358 sec   (1873 perm/sec)   p_kst 4.151164e-01   p_cons 7.000000e-04   p_joint 7.940299e-04

Joint ci ratio: 1.683112e-01	ci left: 7.299746e-04	ci right 8.655129e-04	k: 541	n:680000
Cons ci ratio: 1.790461e-01	ci left: 6.413484e-04	ci right 7.688497e-04	k: 478	n:680000
KS ci ratio: 5.643247e-03	ci left: 4.138903e-01	ci right 4.162340e-01	k: 282242	n:680000
PLCH2   680000 perm   366 sec   (1857 perm/sec)   p_kst 4.150618e-01   p_cons 7.029412e-04   p_joint 7.955882e-04

Joint ci ratio: 1.675405e-01	ci left: 7.263370e-04	ci right 8.605200e-04	k: 546	n:690000
Cons ci ratio: 1.781192e-01	ci left: 6.389758e-04	ci right 7.652770e-04	k: 483	n:690000
KS ci ratio: 5.601246e-03	ci left: 4.139819e-01	ci right 4.163087e-01	k: 286450	n:690000
PLCH2   690000 perm   375 sec   (1842 perm/sec)   p_kst 4.151449e-01   p_cons 7.000000e-04   p_joint 7.913043e-04

Joint ci ratio: 1.666294e-01	ci left: 7.241737e-04	ci right 8.571565e-04	k: 552	n:700000
Cons ci ratio: 1.772065e-01	ci left: 6.366728e-04	ci right 7.618048e-04	k: 488	n:700000
KS ci ratio: 5.560790e-03	ci left: 4.140167e-01	ci right 4.163268e-01	k: 290620	n:700000
PLCH2   700000 perm   383 sec   (1828 perm/sec)   p_kst 4.151714e-01   p_cons 6.971429e-04   p_joint 7.885714e-04

Joint ci ratio: 1.645587e-01	ci left: 7.328755e-04	ci right 8.656183e-04	k: 566	n:710000
Cons ci ratio: 1.750708e-01	ci left: 6.438621e-04	ci right 7.687206e-04	k: 500	n:710000
KS ci ratio: 5.521518e-03	ci left: 4.140225e-01	ci right 4.163162e-01	k: 294770	n:710000
PLCH2   710000 perm   392 sec   (1813 perm/sec)   p_kst 4.151690e-01   p_cons 7.042254e-04   p_joint 7.971831e-04

Joint ci ratio: 1.636951e-01	ci left: 7.306877e-04	ci right 8.622712e-04	k: 572	n:720000
Cons ci ratio: 1.742039e-01	ci left: 6.415604e-04	ci right 7.652918e-04	k: 505	n:720000
KS ci ratio: 5.483600e-03	ci left: 4.139809e-01	ci right 4.162586e-01	k: 298886	n:720000
PLCH2   720000 perm   400 sec   (1798 perm/sec)   p_kst 4.151194e-01   p_cons 7.013889e-04   p_joint 7.944444e-04

Joint ci ratio: 1.628449e-01	ci left: 7.285615e-04	ci right 8.590141e-04	k: 578	n:730000
Cons ci ratio: 1.735198e-01	ci left: 6.380128e-04	ci right 7.605261e-04	k: 509	n:730000
KS ci ratio: 5.446253e-03	ci left: 4.139584e-01	ci right 4.162204e-01	k: 303015	n:730000
PLCH2   730000 perm   409 sec   (1784 perm/sec)   p_kst 4.150890e-01   p_cons 6.972603e-04   p_joint 7.917808e-04

Joint ci ratio: 1.614564e-01	ci left: 7.316814e-04	ci right 8.614671e-04	k: 588	n:740000
Cons ci ratio: 1.721745e-01	ci left: 6.397341e-04	ci right 7.615267e-04	k: 517	n:740000
KS ci ratio: 5.410140e-03	ci left: 4.138932e-01	ci right 4.161399e-01	k: 307112	n:740000
PLCH2   740000 perm   418 sec   (1769 perm/sec)   p_kst 4.150162e-01   p_cons 6.986486e-04   p_joint 7.945946e-04

Joint ci ratio: 1.607757e-01	ci left: 7.283234e-04	ci right 8.569162e-04	k: 593	n:750000
Cons ci ratio: 1.718437e-01	ci left: 6.337561e-04	ci right 7.541546e-04	k: 519	n:750000
KS ci ratio: 5.372287e-03	ci left: 4.140511e-01	ci right 4.162828e-01	k: 311375	n:750000
PLCH2   750000 perm   427 sec   (1755 perm/sec)   p_kst 4.151667e-01   p_cons 6.920000e-04   p_joint 7.906667e-04

Joint ci ratio: 1.595713e-01	ci left: 7.301077e-04	ci right 8.579573e-04	k: 602	n:760000
Cons ci ratio: 1.705367e-01	ci left: 6.354925e-04	ci right 7.552083e-04	k: 527	n:760000
KS ci ratio: 5.336460e-03	ci left: 4.140918e-01	ci right 4.163088e-01	k: 315552	n:760000
PLCH2   760000 perm   436 sec   (1742 perm/sec)   p_kst 4.152000e-01   p_cons 6.934211e-04   p_joint 7.921053e-04

Joint ci ratio: 1.580064e-01	ci left: 7.355911e-04	ci right 8.630179e-04	k: 614	n:770000
Cons ci ratio: 1.686307e-01	ci left: 6.421625e-04	ci right 7.616454e-04	k: 539	n:770000
KS ci ratio: 5.301680e-03	ci left: 4.141004e-01	ci right 4.163029e-01	k: 319705	n:770000
PLCH2   770000 perm   445 sec   (1729 perm/sec)   p_kst 4.152013e-01   p_cons 7.000000e-04   p_joint 7.974026e-04

Joint ci ratio: 1.573683e-01	ci left: 7.323176e-04	ci right 8.586167e-04	k: 619	n:780000
Cons ci ratio: 1.680099e-01	ci left: 6.388418e-04	ci right 7.572249e-04	k: 543	n:780000
KS ci ratio: 5.268211e-03	ci left: 4.140498e-01	ci right 4.162381e-01	k: 323812	n:780000
PLCH2   780000 perm   455 sec   (1716 perm/sec)   p_kst 4.151436e-01   p_cons 6.961538e-04   p_joint 7.935897e-04

Joint ci ratio: 1.566125e-01	ci left: 7.303443e-04	ci right 8.556413e-04	k: 625	n:790000
Cons ci ratio: 1.673959e-01	ci left: 6.356059e-04	ci right 7.529155e-04	k: 547	n:790000
KS ci ratio: 5.234973e-03	ci left: 4.140372e-01	ci right 4.162116e-01	k: 327948	n:790000
PLCH2   790000 perm   464 sec   (1703 perm/sec)   p_kst 4.151241e-01   p_cons 6.924051e-04   p_joint 7.911392e-04

Joint ci ratio: 1.558675e-01	ci left: 7.284217e-04	ci right 8.527389e-04	k: 631	n:800000
Cons ci ratio: 1.666376e-01	ci left: 6.336495e-04	ci right 7.500152e-04	k: 552	n:800000
KS ci ratio: 5.202369e-03	ci left: 4.140237e-01	ci right 4.161844e-01	k: 332083	n:800000
PLCH2   800000 perm   473 sec   (1690 perm/sec)   p_kst 4.151037e-01   p_cons 6.900000e-04   p_joint 7.887500e-04

Joint ci ratio: 1.551331e-01	ci left: 7.265480e-04	ci right 8.499067e-04	k: 637	n:810000
Cons ci ratio: 1.657410e-01	ci left: 6.329260e-04	ci right 7.484710e-04	k: 558	n:810000
KS ci ratio: 5.170577e-03	ci left: 4.139908e-01	ci right 4.161382e-01	k: 336202	n:810000
PLCH2   810000 perm   483 sec   (1678 perm/sec)   p_kst 4.150642e-01   p_cons 6.888889e-04   p_joint 7.864198e-04

Joint ci ratio: 1.542890e-01	ci left: 7.258937e-04	ci right 8.484088e-04	k: 644	n:820000
Cons ci ratio: 1.648587e-01	ci left: 6.322217e-04	ci right 7.469628e-04	k: 564	n:820000
KS ci ratio: 5.138626e-03	ci left: 4.140283e-01	ci right 4.161625e-01	k: 340378	n:820000
PLCH2   820000 perm   493 sec   (1665 perm/sec)   p_kst 4.150951e-01   p_cons 6.878049e-04   p_joint 7.853659e-04

Joint ci ratio: 1.534586e-01	ci left: 7.252570e-04	ci right 8.469453e-04	k: 651	n:830000
Cons ci ratio: 1.639904e-01	ci left: 6.315360e-04	ci right 7.454894e-04	k: 570	n:830000
KS ci ratio: 5.107500e-03	ci left: 4.140421e-01	ci right 4.161634e-01	k: 344535	n:830000
PLCH2   830000 perm   502 sec   (1652 perm/sec)   p_kst 4.151024e-01   p_cons 6.867470e-04   p_joint 7.843373e-04

Joint ci ratio: 1.529904e-01	ci left: 7.212022e-04	ci right 8.418071e-04	k: 655	n:840000
Cons ci ratio: 1.635616e-01	ci left: 6.274427e-04	ci right 7.403323e-04	k: 573	n:840000
KS ci ratio: 5.076148e-03	ci left: 4.141305e-01	ci right 4.162392e-01	k: 348755	n:840000
PLCH2   840000 perm   512 sec   (1640 perm/sec)   p_kst 4.151845e-01   p_cons 6.821429e-04   p_joint 7.797619e-04

Joint ci ratio: 1.518373e-01	ci left: 7.240336e-04	ci right 8.441164e-04	k: 665	n:850000
Cons ci ratio: 1.622940e-01	ci left: 6.302176e-04	ci right 7.426420e-04	k: 582	n:850000
KS ci ratio: 5.046614e-03	ci left: 4.140969e-01	ci right 4.161931e-01	k: 352873	n:850000
PLCH2   850000 perm   522 sec   (1628 perm/sec)   p_kst 4.151447e-01   p_cons 6.847059e-04   p_joint 7.823529e-04

Joint ci ratio: 1.503763e-01	ci left: 7.301595e-04	ci right 8.499883e-04	k: 678	n:860000
Cons ci ratio: 1.606486e-01	ci left: 6.362793e-04	ci right 7.485233e-04	k: 594	n:860000
KS ci ratio: 5.017205e-03	ci left: 4.141013e-01	ci right 4.161853e-01	k: 357023	n:860000
PLCH2   860000 perm   532 sec   (1617 perm/sec)   p_kst 4.151430e-01   p_cons 6.906977e-04   p_joint 7.883721e-04

Joint ci ratio: 1.494982e-01	ci left: 7.306173e-04	ci right 8.497584e-04	k: 686	n:870000
Cons ci ratio: 1.598448e-01	ci left: 6.355857e-04	ci right 7.470925e-04	k: 600	n:870000
KS ci ratio: 4.989261e-03	ci left: 4.140126e-01	ci right 4.160845e-01	k: 361092	n:870000
PLCH2   870000 perm   542 sec   (1605 perm/sec)   p_kst 4.150483e-01   p_cons 6.896552e-04   p_joint 7.885057e-04

Joint ci ratio: 1.489574e-01	ci left: 7.277844e-04	ci right 8.459960e-04	k: 691	n:880000
Cons ci ratio: 1.591842e-01	ci left: 6.338181e-04	ci right 7.445113e-04	k: 605	n:880000
KS ci ratio: 4.959874e-03	ci left: 4.141122e-01	ci right 4.161724e-01	k: 365325	n:880000
PLCH2   880000 perm   552 sec   (1594 perm/sec)   p_kst 4.151420e-01   p_cons 6.875000e-04   p_joint 7.852273e-04

Joint ci ratio: 1.481037e-01	ci left: 7.282618e-04	ci right 8.458130e-04	k: 699	n:890000
Cons ci ratio: 1.584020e-01	ci left: 6.331702e-04	ci right 7.431553e-04	k: 611	n:890000
KS ci ratio: 4.931867e-03	ci left: 4.141243e-01	ci right 4.161729e-01	k: 369482	n:890000
PLCH2   890000 perm   562 sec   (1583 perm/sec)   p_kst 4.151483e-01   p_cons 6.865169e-04   p_joint 7.853933e-04

Joint ci ratio: 1.476827e-01	ci left: 7.244499e-04	ci right 8.410240e-04	k: 703	n:900000
Cons ci ratio: 1.578872e-01	ci left: 6.304035e-04	ci right 7.395183e-04	k: 615	n:900000
KS ci ratio: 4.904263e-03	ci left: 4.141428e-01	ci right 4.161800e-01	k: 373645	n:900000
PLCH2   900000 perm   573 sec   (1572 perm/sec)   p_kst 4.151611e-01   p_cons 6.833333e-04   p_joint 7.811111e-04

Joint ci ratio: 1.469540e-01	ci left: 7.238976e-04	ci right 8.397577e-04	k: 710	n:910000
Cons ci ratio: 1.571239e-01	ci left: 6.298095e-04	ci right 7.382448e-04	k: 621	n:910000
KS ci ratio: 4.877535e-03	ci left: 4.141192e-01	ci right 4.161451e-01	k: 377770	n:910000
PLCH2   910000 perm   583 sec   (1561 perm/sec)   p_kst 4.151319e-01   p_cons 6.824176e-04   p_joint 7.802198e-04

Joint ci ratio: 1.459311e-01	ci left: 7.265006e-04	ci right 8.418973e-04	k: 720	n:920000
Cons ci ratio: 1.562471e-01	ci left: 6.302741e-04	ci right 7.381271e-04	k: 628	n:920000
KS ci ratio: 4.850719e-03	ci left: 4.141483e-01	ci right 4.161631e-01	k: 381943	n:920000
PLCH2   920000 perm   593 sec   (1551 perm/sec)   p_kst 4.151554e-01   p_cons 6.826087e-04   p_joint 7.826087e-04

Joint ci ratio: 1.454280e-01	ci left: 7.238690e-04	ci right 8.384169e-04	k: 725	n:930000
Cons ci ratio: 1.557529e-01	ci left: 6.276301e-04	ci right 7.346592e-04	k: 632	n:930000
KS ci ratio: 4.824319e-03	ci left: 4.141789e-01	ci right 4.161829e-01	k: 386118	n:930000
PLCH2   930000 perm   604 sec   (1541 perm/sec)   p_kst 4.151806e-01   p_cons 6.795699e-04   p_joint 7.795699e-04

Joint ci ratio: 1.440453e-01	ci left: 7.305228e-04	ci right 8.449300e-04	k: 739	n:940000
Cons ci ratio: 1.542968e-01	ci left: 6.332241e-04	ci right 7.401043e-04	k: 644	n:940000
KS ci ratio: 4.798619e-03	ci left: 4.141813e-01	ci right 4.161746e-01	k: 390267	n:940000
PLCH2   940000 perm   614 sec   (1531 perm/sec)   p_kst 4.151777e-01   p_cons 6.851064e-04   p_joint 7.861702e-04

Joint ci ratio: 1.432729e-01	ci left: 7.309514e-04	ci right 8.447595e-04	k: 747	n:950000
Cons ci ratio: 1.533486e-01	ci left: 6.346555e-04	ci right 7.410586e-04	k: 652	n:950000
KS ci ratio: 4.772560e-03	ci left: 4.142615e-01	ci right 4.162443e-01	k: 394490	n:950000
PLCH2   950000 perm   625 sec   (1520 perm/sec)   p_kst 4.152526e-01   p_cons 6.863158e-04   p_joint 7.863158e-04

Joint ci ratio: 1.427018e-01	ci left: 7.293637e-04	ci right 8.424334e-04	k: 753	n:960000
Cons ci ratio: 1.526490e-01	ci left: 6.340552e-04	ci right 7.398284e-04	k: 658	n:960000
KS ci ratio: 4.747653e-03	ci left: 4.142651e-01	ci right 4.162375e-01	k: 398641	n:960000
PLCH2   960000 perm   636 sec   (1510 perm/sec)   p_kst 4.152510e-01   p_cons 6.854167e-04   p_joint 7.843750e-04

Joint ci ratio: 1.422312e-01	ci left: 7.268153e-04	ci right 8.390869e-04	k: 758	n:970000
Cons ci ratio: 1.521881e-01	ci left: 6.314850e-04	ci right 7.364822e-04	k: 662	n:970000
KS ci ratio: 4.723143e-03	ci left: 4.142676e-01	ci right 4.162298e-01	k: 402791	n:970000
PLCH2   970000 perm   646 sec   (1500 perm/sec)   p_kst 4.152485e-01   p_cons 6.824742e-04   p_joint 7.814433e-04

Joint ci ratio: 1.418582e-01	ci left: 7.233353e-04	ci right 8.347515e-04	k: 762	n:980000
Cons ci ratio: 1.518452e-01	ci left: 6.279859e-04	ci right 7.321448e-04	k: 665	n:980000
KS ci ratio: 4.699284e-03	ci left: 4.142415e-01	ci right 4.161937e-01	k: 406913	n:980000
PLCH2   980000 perm   657 sec   (1491 perm/sec)   p_kst 4.152173e-01   p_cons 6.785714e-04   p_joint 7.775510e-04

Joint ci ratio: 1.409375e-01	ci left: 7.257727e-04	ci right 8.367777e-04	k: 772	n:990000
Cons ci ratio: 1.511659e-01	ci left: 6.274735e-04	ci right 7.310396e-04	k: 671	n:990000
KS ci ratio: 4.675171e-03	ci left: 4.142796e-01	ci right 4.162219e-01	k: 411098	n:990000
PLCH2   990000 perm   669 sec   (1481 perm/sec)   p_kst 4.152505e-01   p_cons 6.777778e-04   p_joint 7.797980e-04

Joint ci ratio: 1.403938e-01	ci left: 7.243037e-04	ci right 8.346210e-04	k: 778	n:1000000
Cons ci ratio: 1.507182e-01	ci left: 6.250476e-04	ci right 7.278802e-04	k: 675	n:1000000
KS ci ratio: 4.651234e-03	ci left: 4.143369e-01	ci right 4.162696e-01	k: 415303	n:1000000
PLCH2   1000000 perm   680 sec   (1471 perm/sec)   p_kst 4.153030e-01   p_cons 6.750000e-04   p_joint 7.780000e-04

Joint ci ratio: 1.399456e-01	ci left: 7.219092e-04	ci right 8.314815e-04	k: 783	n:1010000
Cons ci ratio: 1.502745e-01	ci left: 6.226702e-04	ci right 7.247830e-04	k: 679	n:1010000
KS ci ratio: 4.628849e-03	ci left: 4.142685e-01	ci right 4.161914e-01	k: 419382	n:1010000
PLCH2   1010000 perm   691 sec   (1461 perm/sec)   p_kst 4.152297e-01   p_cons 6.722772e-04   p_joint 7.752475e-04

Joint ci ratio: 1.393250e-01	ci left: 7.214547e-04	ci right 8.304321e-04	k: 790	n:1020000
Cons ci ratio: 1.497251e-01	ci left: 6.212836e-04	ci right 7.227631e-04	k: 684	n:1020000
KS ci ratio: 4.606543e-03	ci left: 4.142268e-01	ci right 4.161403e-01	k: 423487	n:1020000
PLCH2   1020000 perm   702 sec   (1452 perm/sec)   p_kst 4.151833e-01   p_cons 6.705882e-04   p_joint 7.745098e-04

Joint ci ratio: 1.386258e-01	ci left: 7.219472e-04	ci right 8.304065e-04	k: 798	n:1030000
Cons ci ratio: 1.490737e-01	ci left: 6.208592e-04	ci right 7.217889e-04	k: 690	n:1030000
KS ci ratio: 4.583978e-03	ci left: 4.142472e-01	ci right 4.161514e-01	k: 427655	n:1030000
PLCH2   1030000 perm   714 sec   (1443 perm/sec)   p_kst 4.151990e-01   p_cons 6.699029e-04   p_joint 7.747573e-04

Joint ci ratio: 1.378515e-01	ci left: 7.233600e-04	ci right 8.313747e-04	k: 807	n:1040000
Cons ci ratio: 1.483243e-01	ci left: 6.213697e-04	ci right 7.218296e-04	k: 697	n:1040000
KS ci ratio: 4.562546e-03	ci left: 4.141816e-01	ci right 4.160766e-01	k: 431734	n:1040000
PLCH2   1040000 perm   726 sec   (1433 perm/sec)   p_kst 4.151288e-01   p_cons 6.701923e-04   p_joint 7.759615e-04

Joint ci ratio: 1.370061e-01	ci left: 7.256673e-04	ci right 8.333078e-04	k: 817	n:1050000
Cons ci ratio: 1.473771e-01	ci left: 6.237063e-04	ci right 7.238433e-04	k: 706	n:1050000
KS ci ratio: 4.540788e-03	ci left: 4.141839e-01	ci right 4.160699e-01	k: 435883	n:1050000
PLCH2   1050000 perm   737 sec   (1424 perm/sec)   p_kst 4.151267e-01   p_cons 6.723810e-04   p_joint 7.780952e-04

Joint ci ratio: 1.362585e-01	ci left: 7.270217e-04	ci right 8.342270e-04	k: 826	n:1060000
Cons ci ratio: 1.466528e-01	ci left: 6.241832e-04	ci right 7.238611e-04	k: 713	n:1060000
KS ci ratio: 4.519031e-03	ci left: 4.142193e-01	ci right 4.160963e-01	k: 440067	n:1060000
PLCH2   1060000 perm   749 sec   (1415 perm/sec)   p_kst 4.151575e-01   p_cons 6.726415e-04   p_joint 7.792453e-04

Joint ci ratio: 1.354420e-01	ci left: 7.292554e-04	ci right 8.360937e-04	k: 836	n:1070000
Cons ci ratio: 1.457370e-01	ci left: 6.264533e-04	ci right 7.258146e-04	k: 722	n:1070000
KS ci ratio: 4.498086e-03	ci left: 4.141998e-01	ci right 4.160680e-01	k: 444193	n:1070000
PLCH2   1070000 perm   761 sec   (1407 perm/sec)   p_kst 4.151336e-01   p_cons 6.747664e-04   p_joint 7.813084e-04

Joint ci ratio: 1.342439e-01	ci left: 7.359235e-04	ci right 8.427090e-04	k: 851	n:1080000
Cons ci ratio: 1.443457e-01	ci left: 6.331455e-04	ci right 7.325270e-04	k: 736	n:1080000
KS ci ratio: 4.476226e-03	ci left: 4.143112e-01	ci right 4.161708e-01	k: 448460	n:1080000
PLCH2   1080000 perm   773 sec   (1398 perm/sec)   p_kst 4.152407e-01   p_cons 6.814815e-04   p_joint 7.879630e-04

Joint ci ratio: 1.336181e-01	ci left: 7.362655e-04	ci right 8.425629e-04	k: 859	n:1090000
Cons ci ratio: 1.435685e-01	ci left: 6.344119e-04	ci right 7.334101e-04	k: 744	n:1090000
KS ci ratio: 4.454866e-03	ci left: 4.144004e-01	ci right 4.162515e-01	k: 452705	n:1090000
PLCH2   1090000 perm   784 sec   (1390 perm/sec)   p_kst 4.153257e-01   p_cons 6.825688e-04   p_joint 7.880734e-04

Joint ci ratio: 1.325432e-01	ci left: 7.418758e-04	ci right 8.480539e-04	k: 873	n:1100000
Cons ci ratio: 1.426144e-01	ci left: 6.374101e-04	ci right 7.361588e-04	k: 754	n:1100000
KS ci ratio: 4.435129e-03	ci left: 4.143435e-01	ci right 4.161861e-01	k: 456791	n:1100000
PLCH2   1100000 perm   796 sec   (1381 perm/sec)   p_kst 4.152645e-01   p_cons 6.854545e-04   p_joint 7.936364e-04

Joint ci ratio: 1.318660e-01	ci left: 7.430323e-04	ci right 8.487898e-04	k: 882	n:1110000
Cons ci ratio: 1.418647e-01	ci left: 6.386184e-04	ci right 7.369903e-04	k: 762	n:1110000
KS ci ratio: 4.415734e-03	ci left: 4.142786e-01	ci right 4.161128e-01	k: 460867	n:1110000
PLCH2   1110000 perm   809 sec   (1373 perm/sec)   p_kst 4.151955e-01   p_cons 6.864865e-04   p_joint 7.945946e-04

Joint ci ratio: 1.311254e-01	ci left: 7.450330e-04	ci right 8.504334e-04	k: 892	n:1120000
Cons ci ratio: 1.410352e-01	ci left: 6.406678e-04	ci right 7.387298e-04	k: 771	n:1120000
KS ci ratio: 4.395976e-03	ci left: 4.142827e-01	ci right 4.161088e-01	k: 465019	n:1120000
PLCH2   1120000 perm   821 sec   (1364 perm/sec)   p_kst 4.151955e-01   p_cons 6.883929e-04   p_joint 7.964286e-04

Joint ci ratio: 1.303250e-01	ci left: 7.478560e-04	ci right 8.529600e-04	k: 903	n:1130000
Cons ci ratio: 1.401303e-01	ci left: 6.435366e-04	ci right 7.413529e-04	k: 781	n:1130000
KS ci ratio: 4.376442e-03	ci left: 4.142912e-01	ci right 4.161092e-01	k: 469176	n:1130000
PLCH2   1130000 perm   833 sec   (1356 perm/sec)   p_kst 4.152000e-01   p_cons 6.911504e-04   p_joint 7.991150e-04

Joint ci ratio: 1.296810e-01	ci left: 7.489339e-04	ci right 8.536292e-04	k: 912	n:1140000
Cons ci ratio: 1.395073e-01	ci left: 6.438171e-04	ci right 7.412049e-04	k: 788	n:1140000
KS ci ratio: 4.357181e-03	ci left: 4.142979e-01	ci right 4.161078e-01	k: 473331	n:1140000
PLCH2   1140000 perm   846 sec   (1348 perm/sec)   p_kst 4.152026e-01   p_cons 6.912281e-04   p_joint 8.000000e-04

Joint ci ratio: 1.288369e-01	ci left: 7.525188e-04	ci right 8.569783e-04	k: 924	n:1150000
Cons ci ratio: 1.388053e-01	ci left: 6.449330e-04	ci right 7.419581e-04	k: 796	n:1150000
KS ci ratio: 4.337745e-03	ci left: 4.143522e-01	ci right 4.161543e-01	k: 477541	n:1150000
PLCH2   1150000 perm   858 sec   (1340 perm/sec)   p_kst 4.152530e-01   p_cons 6.921739e-04   p_joint 8.034783e-04

Joint ci ratio: 1.284903e-01	ci left: 7.502032e-04	ci right 8.540396e-04	k: 929	n:1160000
Cons ci ratio: 1.384585e-01	ci left: 6.427019e-04	ci right 7.391298e-04	k: 800	n:1160000
KS ci ratio: 4.318789e-03	ci left: 4.143806e-01	ci right 4.161750e-01	k: 481722	n:1160000
PLCH2   1160000 perm   871 sec   (1332 perm/sec)   p_kst 4.152776e-01   p_cons 6.896552e-04   p_joint 8.008621e-04

Joint ci ratio: 1.279412e-01	ci left: 7.504095e-04	ci right 8.537969e-04	k: 937	n:1170000
Cons ci ratio: 1.379429e-01	ci left: 6.421596e-04	ci right 7.381179e-04	k: 806	n:1170000
KS ci ratio: 4.300307e-03	ci left: 4.143830e-01	ci right 4.161696e-01	k: 485873	n:1170000
PLCH2   1170000 perm   883 sec   (1324 perm/sec)   p_kst 4.152761e-01   p_cons 6.888889e-04   p_joint 8.008547e-04

Joint ci ratio: 1.269299e-01	ci left: 7.563569e-04	ci right 8.596781e-04	k: 952	n:1180000
Cons ci ratio: 1.369283e-01	ci left: 6.465375e-04	ci right 7.423815e-04	k: 818	n:1180000
KS ci ratio: 4.281708e-03	ci left: 4.144251e-01	ci right 4.162042e-01	k: 490071	n:1180000
PLCH2   1180000 perm   896 sec   (1317 perm/sec)   p_kst 4.153144e-01   p_cons 6.932203e-04   p_joint 8.067797e-04

Joint ci ratio: 1.261380e-01	ci left: 7.597658e-04	ci right 8.628568e-04	k: 964	n:1190000
Cons ci ratio: 1.360997e-01	ci left: 6.492208e-04	ci right 7.448331e-04	k: 828	n:1190000
KS ci ratio: 4.263526e-03	ci left: 4.144463e-01	ci right 4.162179e-01	k: 494245	n:1190000
PLCH2   1190000 perm   909 sec   (1309 perm/sec)   p_kst 4.153319e-01   p_cons 6.957983e-04   p_joint 8.100840e-04

Joint ci ratio: 1.256831e-01	ci left: 7.590840e-04	ci right 8.616834e-04	k: 971	n:1200000
Cons ci ratio: 1.358544e-01	ci left: 6.462255e-04	ci right 7.412112e-04	k: 831	n:1200000
KS ci ratio: 4.245843e-03	ci left: 4.144364e-01	ci right 4.162006e-01	k: 498382	n:1200000
PLCH2   1200000 perm   922 sec   (1301 perm/sec)   p_kst 4.153183e-01   p_cons 6.925000e-04   p_joint 8.091667e-04

Joint ci ratio: 1.252971e-01	ci left: 7.576136e-04	ci right 8.596763e-04	k: 977	n:1210000
Cons ci ratio: 1.354481e-01	ci left: 6.448768e-04	ci right 7.393579e-04	k: 836	n:1210000
KS ci ratio: 4.228796e-03	ci left: 4.143788e-01	ci right 4.161356e-01	k: 502461	n:1210000
PLCH2   1210000 perm   935 sec   (1294 perm/sec)   p_kst 4.152570e-01   p_cons 6.909091e-04   p_joint 8.074380e-04

Joint ci ratio: 1.245352e-01	ci left: 7.609325e-04	ci right 8.627730e-04	k: 989	n:1220000
Cons ci ratio: 1.346460e-01	ci left: 6.475108e-04	ci right 7.417710e-04	k: 846	n:1220000
KS ci ratio: 4.211490e-03	ci left: 4.143754e-01	ci right 4.161250e-01	k: 506605	n:1220000
PLCH2   1220000 perm   948 sec   (1286 perm/sec)   p_kst 4.152500e-01   p_cons 6.934426e-04   p_joint 8.106557e-04

Joint ci ratio: 1.239729e-01	ci left: 7.618357e-04	ci right 8.633029e-04	k: 998	n:1230000
Cons ci ratio: 1.340145e-01	ci left: 6.485320e-04	ci right 7.424628e-04	k: 854	n:1230000
KS ci ratio: 4.194093e-03	ci left: 4.144070e-01	ci right 4.161495e-01	k: 510792	n:1230000
PLCH2   1230000 perm   962 sec   (1278 perm/sec)   p_kst 4.152780e-01   p_cons 6.943089e-04   p_joint 8.113821e-04

Joint ci ratio: 1.232348e-01	ci left: 7.650701e-04	ci right 8.663172e-04	k: 1010	n:1240000
Cons ci ratio: 1.332374e-01	ci left: 6.510969e-04	ci right 7.448091e-04	k: 864	n:1240000
KS ci ratio: 4.176799e-03	ci left: 4.144510e-01	ci right 4.161865e-01	k: 514995	n:1240000
PLCH2   1240000 perm   976 sec   (1271 perm/sec)   p_kst 4.153185e-01   p_cons 6.967742e-04   p_joint 8.145161e-04

Joint ci ratio: 1.226297e-01	ci left: 7.667036e-04	ci right 8.676325e-04	k: 1020	n:1250000
Cons ci ratio: 1.327016e-01	ci left: 6.513018e-04	ci right 7.446368e-04	k: 871	n:1250000
KS ci ratio: 4.160169e-03	ci left: 4.144415e-01	ci right 4.161701e-01	k: 519132	n:1250000
PLCH2   1250000 perm   989 sec   (1264 perm/sec)   p_kst 4.153056e-01   p_cons 6.968000e-04   p_joint 8.160000e-04

Joint ci ratio: 1.220927e-01	ci left: 7.675429e-04	ci right 8.681079e-04	k: 1029	n:1260000
Cons ci ratio: 1.320219e-01	ci left: 6.530391e-04	ci right 7.461062e-04	k: 880	n:1260000
KS ci ratio: 4.143696e-03	ci left: 4.144370e-01	ci right 4.161586e-01	k: 523275	n:1260000
PLCH2   1260000 perm   1003 sec   (1257 perm/sec)   p_kst 4.152976e-01   p_cons 6.984127e-04   p_joint 8.166667e-04

Joint ci ratio: 1.216213e-01	ci left: 7.676065e-04	ci right 8.677635e-04	k: 1037	n:1270000
Cons ci ratio: 1.315005e-01	ci left: 6.532272e-04	ci right 7.459247e-04	k: 887	n:1270000
KS ci ratio: 4.127169e-03	ci left: 4.144617e-01	ci right 4.161765e-01	k: 527455	n:1270000
PLCH2   1270000 perm   1016 sec   (1250 perm/sec)   p_kst 4.153189e-01   p_cons 6.984252e-04   p_joint 8.165354e-04

Joint ci ratio: 1.211553e-01	ci left: 7.676698e-04	ci right 8.674238e-04	k: 1045	n:1280000
Cons ci ratio: 1.309121e-01	ci left: 6.541688e-04	ci right 7.465522e-04	k: 895	n:1280000
KS ci ratio: 4.111758e-03	ci left: 4.143774e-01	ci right 4.160855e-01	k: 531496	n:1280000
PLCH2   1280000 perm   1030 sec   (1243 perm/sec)   p_kst 4.152312e-01   p_cons 6.992187e-04   p_joint 8.164062e-04

Joint ci ratio: 1.208094e-01	ci left: 7.662292e-04	ci right 8.654915e-04	k: 1051	n:1290000
Cons ci ratio: 1.304760e-01	ci left: 6.535968e-04	ci right 7.455681e-04	k: 901	n:1290000
KS ci ratio: 4.096478e-03	ci left: 4.142991e-01	ci right 4.160005e-01	k: 535543	n:1290000
PLCH2   1290000 perm   1044 sec   (1236 perm/sec)   p_kst 4.151496e-01   p_cons 6.984496e-04   p_joint 8.147287e-04

Joint ci ratio: 1.202392e-01	ci left: 7.677956e-04	ci right 8.667579e-04	k: 1061	n:1300000
Cons ci ratio: 1.297586e-01	ci left: 6.560111e-04	ci right 7.477755e-04	k: 911	n:1300000
KS ci ratio: 4.080961e-03	ci left: 4.142705e-01	ci right 4.159653e-01	k: 539653	n:1300000
PLCH2   1300000 perm   1057 sec   (1229 perm/sec)   p_kst 4.151177e-01   p_cons 7.007692e-04   p_joint 8.161538e-04

Joint ci ratio: 1.199011e-01	ci left: 7.663771e-04	ci right 8.648591e-04	k: 1067	n:1310000
Cons ci ratio: 1.293339e-01	ci left: 6.554351e-04	ci right 7.467958e-04	k: 917	n:1310000
KS ci ratio: 4.065381e-03	ci left: 4.142705e-01	ci right 4.159589e-01	k: 543800	n:1310000
PLCH2   1310000 perm   1071 sec   (1223 perm/sec)   p_kst 4.151145e-01   p_cons 7.000000e-04   p_joint 8.145038e-04

Joint ci ratio: 1.193436e-01	ci left: 7.679203e-04	ci right 8.661094e-04	k: 1077	n:1320000
Cons ci ratio: 1.287044e-01	ci left: 6.570678e-04	ci right 7.481763e-04	k: 926	n:1320000
KS ci ratio: 4.050150e-03	ci left: 4.142501e-01	ci right 4.159320e-01	k: 547920	n:1320000
PLCH2   1320000 perm   1085 sec   (1217 perm/sec)   p_kst 4.150909e-01   p_cons 7.015152e-04   p_joint 8.159091e-04

Joint ci ratio: 1.187392e-01	ci left: 7.701709e-04	ci right 8.681141e-04	k: 1088	n:1330000
Cons ci ratio: 1.280841e-01	ci left: 6.586770e-04	ci right 7.495351e-04	k: 935	n:1330000
KS ci ratio: 4.034619e-03	ci left: 4.142865e-01	ci right 4.159620e-01	k: 552115	n:1330000
PLCH2   1330000 perm   1099 sec   (1210 perm/sec)   p_kst 4.151241e-01   p_cons 7.030075e-04   p_joint 8.180451e-04

Joint ci ratio: 1.184135e-01	ci left: 7.687682e-04	ci right 8.662460e-04	k: 1094	n:1340000
Cons ci ratio: 1.276756e-01	ci left: 6.580959e-04	ci right 7.485623e-04	k: 941	n:1340000
KS ci ratio: 4.019347e-03	ci left: 4.143125e-01	ci right 4.159819e-01	k: 556297	n:1340000
PLCH2   1340000 perm   1113 sec   (1204 perm/sec)   p_kst 4.151470e-01   p_cons 7.022388e-04   p_joint 8.164179e-04

Joint ci ratio: 1.182519e-01	ci left: 7.652299e-04	ci right 8.621175e-04	k: 1097	n:1350000
Cons ci ratio: 1.274729e-01	ci left: 6.553724e-04	ci right 7.453106e-04	k: 944	n:1350000
KS ci ratio: 4.004503e-03	ci left: 4.143071e-01	ci right 4.159703e-01	k: 560437	n:1350000
PLCH2   1350000 perm   1128 sec   (1197 perm/sec)   p_kst 4.151385e-01   p_cons 6.992593e-04   p_joint 8.125926e-04

Joint ci ratio: 1.176638e-01	ci left: 7.674529e-04	ci right 8.641051e-04	k: 1108	n:1360000
Cons ci ratio: 1.267372e-01	ci left: 6.583846e-04	ci right 7.481755e-04	k: 955	n:1360000
KS ci ratio: 3.989441e-03	ci left: 4.143481e-01	ci right 4.160052e-01	k: 564640	n:1360000
PLCH2   1360000 perm   1142 sec   (1191 perm/sec)   p_kst 4.151765e-01   p_cons 7.022059e-04   p_joint 8.147059e-04

Joint ci ratio: 1.173996e-01	ci left: 7.653933e-04	ci right 8.615547e-04	k: 1113	n:1370000
Cons ci ratio: 1.264072e-01	ci left: 6.571129e-04	ci right 7.464796e-04	k: 960	n:1370000
KS ci ratio: 3.974925e-03	ci left: 4.143426e-01	ci right 4.159935e-01	k: 568780	n:1370000
PLCH2   1370000 perm   1156 sec   (1185 perm/sec)   p_kst 4.151679e-01   p_cons 7.007299e-04   p_joint 8.124088e-04

Joint ci ratio: 1.168761e-01	ci left: 7.668811e-04	ci right 8.627701e-04	k: 1123	n:1380000
Cons ci ratio: 1.259493e-01	ci left: 6.572636e-04	ci right 7.463028e-04	k: 967	n:1380000
KS ci ratio: 3.960140e-03	ci left: 4.143893e-01	ci right 4.160343e-01	k: 572992	n:1380000
PLCH2   1380000 perm   1171 sec   (1179 perm/sec)   p_kst 4.152116e-01   p_cons 7.007246e-04   p_joint 8.137681e-04

Joint ci ratio: 1.164624e-01	ci left: 7.669514e-04	ci right 8.624864e-04	k: 1131	n:1390000
Cons ci ratio: 1.255608e-01	ci left: 6.567158e-04	ci right 7.453860e-04	k: 973	n:1390000
KS ci ratio: 3.945958e-03	ci left: 4.143814e-01	ci right 4.160204e-01	k: 577129	n:1390000
PLCH2   1390000 perm   1185 sec   (1173 perm/sec)   p_kst 4.152007e-01   p_cons 7.000000e-04   p_joint 8.136691e-04

Joint ci ratio: 1.156477e-01	ci left: 7.725701e-04	ci right 8.680858e-04	k: 1147	n:1400000
Cons ci ratio: 1.245417e-01	ci left: 6.630962e-04	ci right 7.518475e-04	k: 989	n:1400000
KS ci ratio: 3.932181e-03	ci left: 4.143422e-01	ci right 4.159753e-01	k: 581222	n:1400000
PLCH2   1400000 perm   1200 sec   (1167 perm/sec)   p_kst 4.151586e-01   p_cons 7.064286e-04   p_joint 8.192857e-04

Joint ci ratio: 1.152967e-01	ci left: 7.719121e-04	ci right 8.670371e-04	k: 1154	n:1410000
Cons ci ratio: 1.242285e-01	ci left: 6.618291e-04	ci right 7.501717e-04	k: 994	n:1410000
KS ci ratio: 3.918164e-03	ci left: 4.143510e-01	ci right 4.159784e-01	k: 585382	n:1410000
PLCH2   1410000 perm   1215 sec   (1161 perm/sec)   p_kst 4.151645e-01   p_cons 7.049645e-04   p_joint 8.184397e-04

Joint ci ratio: 1.148008e-01	ci left: 7.733157e-04	ci right 8.681759e-04	k: 1164	n:1420000
Cons ci ratio: 1.237320e-01	ci left: 6.626274e-04	ci right 7.506972e-04	k: 1002	n:1420000
KS ci ratio: 3.903838e-03	ci left: 4.144168e-01	ci right 4.160385e-01	k: 589623	n:1420000
PLCH2   1420000 perm   1229 sec   (1155 perm/sec)   p_kst 4.152275e-01   p_cons 7.056338e-04   p_joint 8.197183e-04

Joint ci ratio: 1.143598e-01	ci left: 7.740212e-04	ci right 8.685788e-04	k: 1173	n:1430000
Cons ci ratio: 1.231805e-01	ci left: 6.640931e-04	ci right 7.519355e-04	k: 1011	n:1430000
KS ci ratio: 3.889981e-03	ci left: 4.144425e-01	ci right 4.160585e-01	k: 593808	n:1430000
PLCH2   1430000 perm   1245 sec   (1149 perm/sec)   p_kst 4.152503e-01   p_cons 7.069930e-04   p_joint 8.202797e-04

Joint ci ratio: 1.140205e-01	ci left: 7.733683e-04	ci right 8.675469e-04	k: 1180	n:1440000
Cons ci ratio: 1.228170e-01	ci left: 6.635198e-04	ci right 7.510086e-04	k: 1017	n:1440000
KS ci ratio: 3.876470e-03	ci left: 4.144429e-01	ci right 4.160533e-01	k: 597957	n:1440000
PLCH2   1440000 perm   1260 sec   (1143 perm/sec)   p_kst 4.152479e-01   p_cons 7.062500e-04   p_joint 8.194444e-04

Joint ci ratio: 1.137320e-01	ci left: 7.720548e-04	ci right 8.658196e-04	k: 1186	n:1450000
Cons ci ratio: 1.225166e-01	ci left: 6.622862e-04	ci right 7.493832e-04	k: 1022	n:1450000
KS ci ratio: 3.862962e-03	ci left: 4.144605e-01	ci right 4.160653e-01	k: 602131	n:1450000
PLCH2   1450000 perm   1275 sec   (1137 perm/sec)   p_kst 4.152628e-01   p_cons 7.048276e-04   p_joint 8.179310e-04

Joint ci ratio: 1.134934e-01	ci left: 7.700941e-04	ci right 8.634113e-04	k: 1191	n:1460000
Cons ci ratio: 1.223375e-01	ci left: 6.597418e-04	ci right 7.463682e-04	k: 1025	n:1460000
KS ci ratio: 3.849881e-03	ci left: 4.144416e-01	ci right 4.160409e-01	k: 606252	n:1460000
PLCH2   1460000 perm   1290 sec   (1131 perm/sec)   p_kst 4.152411e-01   p_cons 7.020548e-04   p_joint 8.157534e-04

Joint ci ratio: 1.131144e-01	ci left: 7.701433e-04	ci right 8.631341e-04	k: 1199	n:1470000
Cons ci ratio: 1.219814e-01	ci left: 6.592107e-04	ci right 7.454972e-04	k: 1031	n:1470000
KS ci ratio: 3.836793e-03	ci left: 4.144407e-01	ci right 4.160345e-01	k: 610399	n:1470000
PLCH2   1470000 perm   1306 sec   (1126 perm/sec)   p_kst 4.152374e-01   p_cons 7.013605e-04   p_joint 8.156463e-04

Joint ci ratio: 1.127860e-01	ci left: 7.695357e-04	ci right 8.621654e-04	k: 1206	n:1480000
Cons ci ratio: 1.215698e-01	ci left: 6.593422e-04	ci right 7.453338e-04	k: 1038	n:1480000
KS ci ratio: 3.824120e-03	ci left: 4.144039e-01	ci right 4.159923e-01	k: 614493	n:1480000
PLCH2   1480000 perm   1321 sec   (1120 perm/sec)   p_kst 4.151980e-01   p_cons 7.013514e-04   p_joint 8.148649e-04

Joint ci ratio: 1.122754e-01	ci left: 7.715458e-04	ci right 8.639693e-04	k: 1217	n:1490000
Cons ci ratio: 1.209888e-01	ci left: 6.614249e-04	ci right 7.472464e-04	k: 1048	n:1490000
KS ci ratio: 3.811086e-03	ci left: 4.144294e-01	ci right 4.160125e-01	k: 618679	n:1490000
PLCH2   1490000 perm   1336 sec   (1115 perm/sec)   p_kst 4.152208e-01   p_cons 7.033557e-04   p_joint 8.167785e-04

Joint ci ratio: 1.117263e-01	ci left: 7.741781e-04	ci right 8.664334e-04	k: 1229	n:1500000
Cons ci ratio: 1.203593e-01	ci left: 6.641275e-04	ci right 7.498193e-04	k: 1059	n:1500000
KS ci ratio: 3.798326e-03	ci left: 4.144366e-01	ci right 4.160144e-01	k: 622838	n:1500000
PLCH2   1500000 perm   1352 sec   (1110 perm/sec)   p_kst 4.152253e-01   p_cons 7.060000e-04   p_joint 8.193333e-04

Joint ci ratio: 1.114097e-01	ci left: 7.735575e-04	ci right 8.654606e-04	k: 1236	n:1510000
Cons ci ratio: 1.201895e-01	ci left: 6.616562e-04	ci right 7.469002e-04	k: 1062	n:1510000
KS ci ratio: 3.785884e-03	ci left: 4.144192e-01	ci right 4.159917e-01	k: 626960	n:1510000
PLCH2   1510000 perm   1367 sec   (1104 perm/sec)   p_kst 4.152053e-01   p_cons 7.033113e-04   p_joint 8.185430e-04

Joint ci ratio: 1.110066e-01	ci left: 7.742247e-04	ci right 8.658524e-04	k: 1245	n:1520000
Cons ci ratio: 1.197397e-01	ci left: 6.624084e-04	ci right 7.474074e-04	k: 1070	n:1520000
KS ci ratio: 3.773298e-03	ci left: 4.144362e-01	ci right 4.160036e-01	k: 631134	n:1520000
PLCH2   1520000 perm   1383 sec   (1099 perm/sec)   p_kst 4.152197e-01   p_cons 7.039474e-04   p_joint 8.190789e-04

Joint ci ratio: 1.105638e-01	ci left: 7.755193e-04	ci right 8.669102e-04	k: 1255	n:1530000
Cons ci ratio: 1.191845e-01	ci left: 6.644197e-04	ci right 7.492535e-04	k: 1080	n:1530000
KS ci ratio: 3.761054e-03	ci left: 4.144249e-01	ci right 4.159872e-01	k: 635265	n:1530000
PLCH2   1530000 perm   1399 sec   (1094 perm/sec)   p_kst 4.152059e-01   p_cons 7.058824e-04   p_joint 8.202614e-04

Joint ci ratio: 1.102133e-01	ci left: 7.755348e-04	ci right 8.666191e-04	k: 1263	n:1540000
Cons ci ratio: 1.187458e-01	ci left: 6.651455e-04	ci right 7.497375e-04	k: 1088	n:1540000
KS ci ratio: 3.748352e-03	ci left: 4.144884e-01	ci right 4.160456e-01	k: 639511	n:1540000
PLCH2   1540000 perm   1415 sec   (1088 perm/sec)   p_kst 4.152669e-01   p_cons 7.064935e-04   p_joint 8.201299e-04

Joint ci ratio: 1.096937e-01	ci left: 7.780604e-04	ci right 8.689827e-04	k: 1275	n:1550000
Cons ci ratio: 1.183120e-01	ci left: 6.658625e-04	ci right 7.502147e-04	k: 1096	n:1550000
KS ci ratio: 3.736473e-03	ci left: 4.144609e-01	ci right 4.160130e-01	k: 643617	n:1550000
PLCH2   1550000 perm   1431 sec   (1083 perm/sec)   p_kst 4.152368e-01   p_cons 7.070968e-04   p_joint 8.225806e-04

Joint ci ratio: 1.093089e-01	ci left: 7.786841e-04	ci right 8.693394e-04	k: 1284	n:1560000
Cons ci ratio: 1.178829e-01	ci left: 6.665709e-04	ci right 7.506852e-04	k: 1104	n:1560000
KS ci ratio: 3.724519e-03	ci left: 4.144580e-01	ci right 4.160051e-01	k: 647761	n:1560000
PLCH2   1560000 perm   1447 sec   (1078 perm/sec)   p_kst 4.152314e-01   p_cons 7.076923e-04   p_joint 8.230769e-04

Joint ci ratio: 1.090969e-01	ci left: 7.768220e-04	ci right 8.670740e-04	k: 1289	n:1570000
Cons ci ratio: 1.176172e-01	ci left: 6.654161e-04	ci right 7.491823e-04	k: 1109	n:1570000
KS ci ratio: 3.712752e-03	ci left: 4.144456e-01	ci right 4.159878e-01	k: 651890	n:1570000
PLCH2   1570000 perm   1463 sec   (1073 perm/sec)   p_kst 4.152166e-01   p_cons 7.063694e-04   p_joint 8.210191e-04

Joint ci ratio: 1.088442e-01	ci left: 7.755994e-04	ci right 8.654871e-04	k: 1295	n:1580000
Cons ci ratio: 1.173006e-01	ci left: 6.648905e-04	ci right 7.483496e-04	k: 1115	n:1580000
KS ci ratio: 3.701294e-03	ci left: 4.144075e-01	ci right 4.159448e-01	k: 655978	n:1580000
PLCH2   1580000 perm   1479 sec   (1068 perm/sec)   p_kst 4.151759e-01   p_cons 7.056962e-04   p_joint 8.196203e-04

Joint ci ratio: 1.083436e-01	ci left: 7.780636e-04	ci right 8.677958e-04	k: 1307	n:1590000
Cons ci ratio: 1.167785e-01	ci left: 6.668140e-04	ci right 7.501163e-04	k: 1125	n:1590000
KS ci ratio: 3.689754e-03	ci left: 4.143943e-01	ci right 4.159268e-01	k: 660105	n:1590000
PLCH2   1590000 perm   1495 sec   (1063 perm/sec)   p_kst 4.151604e-01   p_cons 7.075472e-04   p_joint 8.220126e-04

Joint ci ratio: 1.079728e-01	ci left: 7.786736e-04	ci right 8.681492e-04	k: 1316	n:1600000
Cons ci ratio: 1.163658e-01	ci left: 6.675007e-04	ci right 7.505738e-04	k: 1133	n:1600000
KS ci ratio: 3.678166e-03	ci left: 4.144020e-01	ci right 4.159296e-01	k: 664265	n:1600000
PLCH2   1600000 perm   1512 sec   (1058 perm/sec)   p_kst 4.151656e-01   p_cons 7.081250e-04   p_joint 8.225000e-04

Joint ci ratio: 1.074841e-01	ci left: 7.810897e-04	ci right 8.704111e-04	k: 1328	n:1610000
Cons ci ratio: 1.158054e-01	ci left: 6.699887e-04	ci right 7.529424e-04	k: 1144	n:1610000
KS ci ratio: 3.666888e-03	ci left: 4.143828e-01	ci right 4.159057e-01	k: 668382	n:1610000
PLCH2   1610000 perm   1528 sec   (1053 perm/sec)   p_kst 4.151441e-01   p_cons 7.105590e-04   p_joint 8.248447e-04

Joint ci ratio: 1.071219e-01	ci left: 7.816747e-04	ci right 8.707427e-04	k: 1337	n:1620000
Cons ci ratio: 1.154530e-01	ci left: 6.700489e-04	ci right 7.527405e-04	k: 1151	n:1620000
KS ci ratio: 3.655564e-03	ci left: 4.143837e-01	ci right 4.159018e-01	k: 672531	n:1620000
PLCH2   1620000 perm   1545 sec   (1048 perm/sec)   p_kst 4.151426e-01   p_cons 7.104938e-04   p_joint 8.253086e-04

Joint ci ratio: 1.066842e-01	ci left: 7.834472e-04	ci right 8.723296e-04	k: 1348	n:1630000
Cons ci ratio: 1.149550e-01	ci left: 6.718964e-04	ci right 7.544341e-04	k: 1161	n:1630000
KS ci ratio: 3.644497e-03	ci left: 4.143643e-01	ci right 4.158778e-01	k: 676647	n:1630000
PLCH2   1630000 perm   1562 sec   (1044 perm/sec)   p_kst 4.151209e-01   p_cons 7.122699e-04   p_joint 8.269939e-04

Joint ci ratio: 1.064478e-01	ci left: 7.822311e-04	ci right 8.707665e-04	k: 1354	n:1640000
Cons ci ratio: 1.146594e-01	ci left: 6.713530e-04	ci right 7.535975e-04	k: 1167	n:1640000
KS ci ratio: 3.633333e-03	ci left: 4.143713e-01	ci right 4.158802e-01	k: 680806	n:1640000
PLCH2   1640000 perm   1579 sec   (1039 perm/sec)   p_kst 4.151256e-01   p_cons 7.115854e-04   p_joint 8.256098e-04

Joint ci ratio: 1.062130e-01	ci left: 7.810299e-04	ci right 8.692222e-04	k: 1360	n:1650000
Cons ci ratio: 1.143661e-01	ci left: 6.708164e-04	ci right 7.527707e-04	k: 1173	n:1650000
KS ci ratio: 3.622312e-03	ci left: 4.143729e-01	ci right 4.158771e-01	k: 684956	n:1650000
PLCH2   1650000 perm   1595 sec   (1034 perm/sec)   p_kst 4.151248e-01   p_cons 7.109091e-04   p_joint 8.242424e-04

Joint ci ratio: 1.057477e-01	ci left: 7.833623e-04	ci right 8.714063e-04	k: 1372	n:1660000
Cons ci ratio: 1.139784e-01	ci left: 6.714570e-04	ci right 7.531928e-04	k: 1181	n:1660000
KS ci ratio: 3.611292e-03	ci left: 4.143876e-01	ci right 4.158874e-01	k: 689128	n:1660000
PLCH2   1660000 perm   1612 sec   (1030 perm/sec)   p_kst 4.151373e-01   p_cons 7.114458e-04   p_joint 8.265060e-04

Joint ci ratio: 1.054792e-01	ci left: 7.827523e-04	ci right 8.704906e-04	k: 1379	n:1670000
Cons ci ratio: 1.136424e-01	ci left: 6.715086e-04	ci right 7.529935e-04	k: 1188	n:1670000
KS ci ratio: 3.600572e-03	ci left: 4.143753e-01	ci right 4.158705e-01	k: 693255	n:1670000
PLCH2   1670000 perm   1629 sec   (1025 perm/sec)   p_kst 4.151228e-01   p_cons 7.113772e-04   p_joint 8.257485e-04

Joint ci ratio: 1.052127e-01	ci left: 7.821500e-04	ci right 8.695856e-04	k: 1386	n:1680000
Cons ci ratio: 1.133568e-01	ci left: 6.709815e-04	ci right 7.521842e-04	k: 1194	n:1680000
KS ci ratio: 3.590043e-03	ci left: 4.143500e-01	ci right 4.158408e-01	k: 697360	n:1680000
PLCH2   1680000 perm   1647 sec   (1020 perm/sec)   p_kst 4.150952e-01   p_cons 7.107143e-04   p_joint 8.250000e-04

Joint ci ratio: 1.049106e-01	ci left: 7.821312e-04	ci right 8.692982e-04	k: 1394	n:1690000
Cons ci ratio: 1.130733e-01	ci left: 6.704610e-04	ci right 7.513842e-04	k: 1200	n:1690000
KS ci ratio: 3.579859e-03	ci left: 4.142907e-01	ci right 4.157770e-01	k: 701407	n:1690000
PLCH2   1690000 perm   1664 sec   (1016 perm/sec)   p_kst 4.150337e-01   p_cons 7.100592e-04   p_joint 8.248521e-04

Joint ci ratio: 1.044994e-01	ci left: 7.838316e-04	ci right 8.708246e-04	k: 1405	n:1700000
Cons ci ratio: 1.125589e-01	ci left: 6.728051e-04	ci right 7.536173e-04	k: 1211	n:1700000
KS ci ratio: 3.569256e-03	ci left: 4.143009e-01	ci right 4.157829e-01	k: 705571	n:1700000
PLCH2   1700000 perm   1681 sec   (1011 perm/sec)   p_kst 4.150418e-01   p_cons 7.123529e-04   p_joint 8.264706e-04

Joint ci ratio: 1.043882e-01	ci left: 7.809563e-04	ci right 8.675323e-04	k: 1408	n:1710000
Cons ci ratio: 1.124200e-01	ci left: 6.705756e-04	ci right 7.510140e-04	k: 1214	n:1710000
KS ci ratio: 3.558459e-03	ci left: 4.143502e-01	ci right 4.158279e-01	k: 709802	n:1710000
PLCH2   1710000 perm   1699 sec   (1007 perm/sec)   p_kst 4.150889e-01   p_cons 7.099415e-04   p_joint 8.233918e-04

Joint ci ratio: 1.040197e-01	ci left: 7.820783e-04	ci right 8.684539e-04	k: 1418	n:1720000
Cons ci ratio: 1.119601e-01	ci left: 6.723277e-04	ci right 7.526246e-04	k: 1224	n:1720000
KS ci ratio: 3.548558e-03	ci left: 4.142897e-01	ci right 4.157630e-01	k: 713845	n:1720000
PLCH2   1720000 perm   1716 sec   (1002 perm/sec)   p_kst 4.150262e-01   p_cons 7.116279e-04   p_joint 8.244186e-04

Joint ci ratio: 1.036913e-01	ci left: 7.826248e-04	ci right 8.687713e-04	k: 1427	n:1730000
Cons ci ratio: 1.115962e-01	ci left: 6.729364e-04	ci right 7.530277e-04	k: 1232	n:1730000
KS ci ratio: 3.538237e-03	ci left: 4.142986e-01	ci right 4.157676e-01	k: 718007	n:1730000
PLCH2   1730000 perm   1734 sec   (998 perm/sec)   p_kst 4.150329e-01   p_cons 7.121387e-04   p_joint 8.248555e-04

Joint ci ratio: 1.034743e-01	ci left: 7.814859e-04	ci right 8.673160e-04	k: 1433	n:1740000
Cons ci ratio: 1.113257e-01	ci left: 6.724211e-04	ci right 7.522443e-04	k: 1238	n:1740000
KS ci ratio: 3.528144e-03	ci left: 4.142884e-01	ci right 4.157532e-01	k: 722136	n:1740000
PLCH2   1740000 perm   1751 sec   (993 perm/sec)   p_kst 4.150207e-01   p_cons 7.114943e-04   p_joint 8.235632e-04

Joint ci ratio: 1.030439e-01	ci left: 7.837004e-04	ci right 8.693940e-04	k: 1445	n:1750000
Cons ci ratio: 1.107904e-01	ci left: 6.752454e-04	ci right 7.549933e-04	k: 1250	n:1750000
KS ci ratio: 3.518005e-03	ci left: 4.142967e-01	ci right 4.157573e-01	k: 726297	n:1750000
PLCH2   1750000 perm   1769 sec   (989 perm/sec)   p_kst 4.150269e-01   p_cons 7.142857e-04   p_joint 8.257143e-04

Joint ci ratio: 1.027600e-01	ci left: 7.836760e-04	ci right 8.691167e-04	k: 1453	n:1760000
Cons ci ratio: 1.104817e-01	ci left: 6.752760e-04	ci right 7.547908e-04	k: 1257	n:1760000
KS ci ratio: 3.507489e-03	ci left: 4.143691e-01	ci right 4.158255e-01	k: 730571	n:1760000
PLCH2   1760000 perm   1787 sec   (985 perm/sec)   p_kst 4.150972e-01   p_cons 7.142045e-04   p_joint 8.255682e-04

Joint ci ratio: 1.024435e-01	ci left: 7.842027e-04	ci right 8.694216e-04	k: 1462	n:1770000
Cons ci ratio: 1.101320e-01	ci left: 6.758560e-04	ci right 7.551709e-04	k: 1265	n:1770000
KS ci ratio: 3.497424e-03	ci left: 4.143909e-01	ci right 4.158433e-01	k: 734757	n:1770000
PLCH2   1770000 perm   1805 sec   (980 perm/sec)   p_kst 4.151169e-01   p_cons 7.146893e-04   p_joint 8.259887e-04

Joint ci ratio: 1.021993e-01	ci left: 7.836290e-04	ci right 8.685704e-04	k: 1469	n:1780000
Cons ci ratio: 1.099153e-01	ci left: 6.747907e-04	ci right 7.538146e-04	k: 1270	n:1780000
KS ci ratio: 3.487514e-03	ci left: 4.144030e-01	ci right 4.158513e-01	k: 738926	n:1780000
PLCH2   1780000 perm   1824 sec   (976 perm/sec)   p_kst 4.151270e-01   p_cons 7.134831e-04   p_joint 8.252809e-04

Joint ci ratio: 1.018878e-01	ci left: 7.841508e-04	ci right 8.688742e-04	k: 1478	n:1790000
Cons ci ratio: 1.095710e-01	ci left: 6.753676e-04	ci right 7.541953e-04	k: 1278	n:1790000
KS ci ratio: 3.477612e-03	ci left: 4.144255e-01	ci right 4.158698e-01	k: 743114	n:1790000
PLCH2   1790000 perm   1842 sec   (972 perm/sec)   p_kst 4.151475e-01   p_cons 7.139665e-04   p_joint 8.256983e-04

Joint ci ratio: 1.016819e-01	ci left: 7.830429e-04	ci right 8.674653e-04	k: 1484	n:1800000
Cons ci ratio: 1.093149e-01	ci left: 6.748576e-04	ci right 7.534298e-04	k: 1284	n:1800000
KS ci ratio: 3.468178e-03	ci left: 4.143939e-01	ci right 4.158341e-01	k: 747205	n:1800000
PLCH2   1800000 perm   1860 sec   (968 perm/sec)   p_kst 4.151139e-01   p_cons 7.133333e-04   p_joint 8.244444e-04

Joint ci ratio: 1.015112e-01	ci left: 7.814089e-04	ci right 8.655054e-04	k: 1489	n:1810000
Cons ci ratio: 1.091452e-01	ci left: 6.732786e-04	ci right 7.515376e-04	k: 1288	n:1810000
KS ci ratio: 3.458270e-03	ci left: 4.144400e-01	ci right 4.158763e-01	k: 751436	n:1810000
PLCH2   1810000 perm   1879 sec   (964 perm/sec)   p_kst 4.151580e-01   p_cons 7.116022e-04   p_joint 8.226519e-04

Joint ci ratio: 1.012398e-01	ci left: 7.813996e-04	ci right 8.652568e-04	k: 1497	n:1820000
Cons ci ratio: 1.088081e-01	ci left: 6.738551e-04	ci right 7.519236e-04	k: 1296	n:1820000
KS ci ratio: 3.448852e-03	ci left: 4.144285e-01	ci right 4.158608e-01	k: 755563	n:1820000
PLCH2   1820000 perm   1897 sec   (959 perm/sec)   p_kst 4.151445e-01   p_cons 7.120879e-04   p_joint 8.225275e-04

Joint ci ratio: 1.008700e-01	ci left: 7.829887e-04	ci right 8.666914e-04	k: 1508	n:1830000
Cons ci ratio: 1.083909e-01	ci left: 6.754889e-04	ci right 7.534276e-04	k: 1306	n:1830000
KS ci ratio: 3.439449e-03	ci left: 4.144258e-01	ci right 4.158542e-01	k: 759706	n:1830000
PLCH2   1830000 perm   1916 sec   (955 perm/sec)   p_kst 4.151399e-01   p_cons 7.136612e-04   p_joint 8.240437e-04

Joint ci ratio: 1.008368e-01	ci left: 7.792630e-04	ci right 8.625384e-04	k: 1509	n:1840000
Cons ci ratio: 1.083497e-01	ci left: 6.723465e-04	ci right 7.498911e-04	k: 1307	n:1840000
KS ci ratio: 3.430034e-03	ci left: 4.144357e-01	ci right 4.158602e-01	k: 763872	n:1840000
PLCH2   1840000 perm   1935 sec   (951 perm/sec)   p_kst 4.151478e-01   p_cons 7.103261e-04   p_joint 8.201087e-04

Joint ci ratio: 1.007703e-01	ci left: 7.761046e-04	ci right 8.589844e-04	k: 1511	n:1850000
Cons ci ratio: 1.082671e-01	ci left: 6.697639e-04	ci right 7.469481e-04	k: 1309	n:1850000
KS ci ratio: 3.420543e-03	ci left: 4.144671e-01	ci right 4.158878e-01	k: 768078	n:1850000
PLCH2   1850000 perm   1954 sec   (947 perm/sec)   p_kst 4.151773e-01   p_cons 7.075676e-04   p_joint 8.167568e-04

Joint ci ratio: 1.004056e-01	ci left: 7.776972e-04	ci right 8.604289e-04	k: 1522	n:1860000
Cons ci ratio: 1.078561e-01	ci left: 6.713941e-04	ci right 7.484538e-04	k: 1319	n:1860000
KS ci ratio: 3.411191e-03	ci left: 4.144896e-01	ci right 4.159064e-01	k: 772268	n:1860000
PLCH2   1860000 perm   1974 sec   (942 perm/sec)   p_kst 4.151978e-01   p_cons 7.091398e-04   p_joint 8.182796e-04

Joint ci ratio: 1.002085e-01	ci left: 7.766664e-04	ci right 8.591167e-04	k: 1528	n:1870000
Cons ci ratio: 1.076525e-01	ci left: 6.704055e-04	ci right 7.471972e-04	k: 1324	n:1870000
KS ci ratio: 3.401845e-03	ci left: 4.145219e-01	ci right 4.159350e-01	k: 776477	n:1870000
PLCH2   1870000 perm   1992 sec   (939 perm/sec)   p_kst 4.152283e-01   p_cons 7.080214e-04   p_joint 8.171123e-04

Joint ci ratio: 9.984990e-02	ci left: 7.782399e-04	ci right 8.605443e-04	k: 1539	n:1880000
Cons ci ratio: 1.072485e-01	ci left: 6.720157e-04	ci right 7.486848e-04	k: 1334	n:1880000
KS ci ratio: 3.392972e-03	ci left: 4.144971e-01	ci right 4.159064e-01	k: 780579	n:1880000
PLCH2   1880000 perm   2012 sec   (935 perm/sec)   p_kst 4.152016e-01   p_cons 7.095745e-04   p_joint 8.186170e-04

Joint ci ratio: 9.972059e-02	ci left: 7.761858e-04	ci right 8.581604e-04	k: 1543	n:1890000
Cons ci ratio: 1.070882e-01	ci left: 6.705197e-04	ci right 7.468966e-04	k: 1338	n:1890000
KS ci ratio: 3.384065e-03	ci left: 4.144873e-01	ci right 4.158928e-01	k: 784709	n:1890000
PLCH2   1890000 perm   2031 sec   (931 perm/sec)   p_kst 4.151899e-01   p_cons 7.079365e-04   p_joint 8.164021e-04

Joint ci ratio: 9.943120e-02	ci left: 7.767195e-04	ci right 8.584986e-04	k: 1552	n:1900000
Cons ci ratio: 1.067301e-01	ci left: 6.716009e-04	ci right 7.478290e-04	k: 1347	n:1900000
KS ci ratio: 3.374877e-03	ci left: 4.145282e-01	ci right 4.159300e-01	k: 788935	n:1900000
PLCH2   1900000 perm   2050 sec   (927 perm/sec)   p_kst 4.152289e-01   p_cons 7.089474e-04   p_joint 8.168421e-04

Joint ci ratio: 9.914431e-02	ci left: 7.772480e-04	ci right 8.588328e-04	k: 1561	n:1910000
Cons ci ratio: 1.064541e-01	ci left: 6.716519e-04	ci right 7.476763e-04	k: 1354	n:1910000
KS ci ratio: 3.365847e-03	ci left: 4.145565e-01	ci right 4.159547e-01	k: 793138	n:1910000
PLCH2   1910000 perm   2070 sec   (923 perm/sec)   p_kst 4.152555e-01   p_cons 7.089005e-04   p_joint 8.172775e-04

Joint ci ratio: 9.882841e-02	ci left: 7.782792e-04	ci right 8.596969e-04	k: 1571	n:1920000
Cons ci ratio: 1.061022e-01	ci left: 6.727166e-04	ci right 7.485941e-04	k: 1363	n:1920000
KS ci ratio: 3.357123e-03	ci left: 4.145508e-01	ci right 4.159453e-01	k: 797276	n:1920000
PLCH2   1920000 perm   2089 sec   (919 perm/sec)   p_kst 4.152479e-01   p_cons 7.098958e-04   p_joint 8.182292e-04

Joint ci ratio: 9.848437e-02	ci left: 7.798056e-04	ci right 8.610826e-04	k: 1582	n:1930000
Cons ci ratio: 1.057538e-01	ci left: 6.737707e-04	ci right 7.495021e-04	k: 1372	n:1930000
KS ci ratio: 3.348066e-03	ci left: 4.146031e-01	ci right 4.159940e-01	k: 801526	n:1930000
PLCH2   1930000 perm   2109 sec   (915 perm/sec)   p_kst 4.152984e-01   p_cons 7.108808e-04   p_joint 8.196891e-04

Joint ci ratio: 9.817472e-02	ci left: 7.808139e-04	ci right 8.619253e-04	k: 1592	n:1940000
Cons ci ratio: 1.054089e-01	ci left: 6.748144e-04	ci right 7.504003e-04	k: 1381	n:1940000
KS ci ratio: 3.339525e-03	ci left: 4.145905e-01	ci right 4.159778e-01	k: 805651	n:1940000
PLCH2   1940000 perm   2128 sec   (912 perm/sec)   p_kst 4.152840e-01   p_cons 7.118557e-04   p_joint 8.206186e-04

Joint ci ratio: 9.786798e-02	ci left: 7.818122e-04	ci right 8.627590e-04	k: 1602	n:1950000
Cons ci ratio: 1.051051e-01	ci left: 6.753483e-04	ci right 7.507626e-04	k: 1389	n:1950000
KS ci ratio: 3.330760e-03	ci left: 4.146200e-01	ci right 4.160038e-01	k: 809858	n:1950000
PLCH2   1950000 perm   2148 sec   (908 perm/sec)   p_kst 4.153118e-01   p_cons 7.123077e-04   p_joint 8.215385e-04

Joint ci ratio: 9.768539e-02	ci left: 7.808097e-04	ci right 8.614933e-04	k: 1608	n:1960000
Cons ci ratio: 1.049166e-01	ci left: 6.743867e-04	ci right 7.495502e-04	k: 1394	n:1960000
KS ci ratio: 3.322508e-03	ci left: 4.145845e-01	ci right 4.159647e-01	k: 813938	n:1960000
PLCH2   1960000 perm   2168 sec   (904 perm/sec)   p_kst 4.152745e-01   p_cons 7.112245e-04   p_joint 8.204082e-04

Joint ci ratio: 9.732305e-02	ci left: 7.827891e-04	ci right 8.633601e-04	k: 1620	n:1970000
Cons ci ratio: 1.045425e-01	ci left: 6.759066e-04	ci right 7.509544e-04	k: 1404	n:1970000
KS ci ratio: 3.314167e-03	ci left: 4.145712e-01	ci right 4.159479e-01	k: 818061	n:1970000
PLCH2   1970000 perm   2188 sec   (900 perm/sec)   p_kst 4.152594e-01   p_cons 7.126904e-04   p_joint 8.223350e-04

Joint ci ratio: 9.714348e-02	ci left: 7.817922e-04	ci right 8.621036e-04	k: 1626	n:1980000
Cons ci ratio: 1.043200e-01	ci left: 6.754441e-04	ci right 7.502711e-04	k: 1410	n:1980000
KS ci ratio: 3.305608e-03	ci left: 4.145994e-01	ci right 4.159726e-01	k: 822266	n:1980000
PLCH2   1980000 perm   2207 sec   (897 perm/sec)   p_kst 4.152859e-01   p_cons 7.121212e-04   p_joint 8.212121e-04

Joint ci ratio: 9.696491e-02	ci left: 7.808055e-04	ci right 8.608597e-04	k: 1632	n:1990000
Cons ci ratio: 1.040990e-01	ci left: 6.749864e-04	ci right 7.495946e-04	k: 1416	n:1990000
KS ci ratio: 3.297151e-03	ci left: 4.146218e-01	ci right 4.159916e-01	k: 826460	n:1990000
PLCH2   1990000 perm   2227 sec   (893 perm/sec)   p_kst 4.153065e-01   p_cons 7.115578e-04   p_joint 8.201005e-04

Joint ci ratio: 9.669879e-02	ci left: 7.812925e-04	ci right 8.611644e-04	k: 1641	n:2000000
Cons ci ratio: 1.038428e-01	ci left: 6.750204e-04	ci right 7.494376e-04	k: 1423	n:2000000
KS ci ratio: 3.288736e-03	ci left: 4.146474e-01	ci right 4.160138e-01	k: 830661	n:2000000
PLCH2   2000000 perm   2248 sec   (890 perm/sec)   p_kst 4.153305e-01   p_cons 7.115000e-04   p_joint 8.205000e-04

Joint ci ratio: 9.649336e-02	ci left: 7.808039e-04	ci right 8.604467e-04	k: 1648	n:2010000
Cons ci ratio: 1.036973e-01	ci left: 6.736005e-04	ci right 7.477507e-04	k: 1427	n:2010000
KS ci ratio: 3.280411e-03	ci left: 4.146689e-01	ci right 4.160319e-01	k: 834854	n:2010000
PLCH2   2010000 perm   2268 sec   (886 perm/sec)   p_kst 4.153502e-01   p_cons 7.099502e-04   p_joint 8.199005e-04

Joint ci ratio: 9.626014e-02	ci left: 7.808035e-04	ci right 8.602428e-04	k: 1656	n:2020000
Cons ci ratio: 1.034441e-01	ci left: 6.736414e-04	ci right 7.476041e-04	k: 1434	n:2020000
KS ci ratio: 3.272246e-03	ci left: 4.146758e-01	ci right 4.160354e-01	k: 839018	n:2020000
PLCH2   2020000 perm   2287 sec   (883 perm/sec)   p_kst 4.153554e-01   p_cons 7.099010e-04   p_joint 8.198020e-04

Joint ci ratio: 9.591338e-02	ci left: 7.827265e-04	ci right 8.620585e-04	k: 1668	n:2030000
Cons ci ratio: 1.031212e-01	ci left: 6.746420e-04	ci right 7.484693e-04	k: 1443	n:2030000
KS ci ratio: 3.264417e-03	ci left: 4.146417e-01	ci right 4.159979e-01	k: 843099	n:2030000
PLCH2   2030000 perm   2308 sec   (880 perm/sec)   p_kst 4.153197e-01   p_cons 7.108374e-04   p_joint 8.216749e-04

Joint ci ratio: 9.568434e-02	ci left: 7.827172e-04	ci right 8.618482e-04	k: 1676	n:2040000
Cons ci ratio: 1.029432e-01	ci left: 6.737227e-04	ci right 7.473144e-04	k: 1448	n:2040000
KS ci ratio: 3.256364e-03	ci left: 4.146496e-01	ci right 4.160026e-01	k: 847265	n:2040000
PLCH2   2040000 perm   2328 sec   (876 perm/sec)   p_kst 4.153260e-01   p_cons 7.098039e-04   p_joint 8.215686e-04

Joint ci ratio: 9.531550e-02	ci left: 7.850891e-04	ci right 8.641369e-04	k: 1689	n:2050000
Cons ci ratio: 1.025897e-01	ci left: 6.751890e-04	ci right 7.486723e-04	k: 1458	n:2050000
KS ci ratio: 3.248279e-03	ci left: 4.146712e-01	ci right 4.160208e-01	k: 851459	n:2050000
PLCH2   2050000 perm   2348 sec   (873 perm/sec)   p_kst 4.153459e-01   p_cons 7.112195e-04   p_joint 8.239024e-04

Joint ci ratio: 9.514680e-02	ci left: 7.841212e-04	ci right 8.629240e-04	k: 1695	n:2060000
Cons ci ratio: 1.023794e-01	ci left: 6.747493e-04	ci right 7.480253e-04	k: 1464	n:2060000
KS ci ratio: 3.240296e-03	ci left: 4.146862e-01	ci right 4.160325e-01	k: 855640	n:2060000
PLCH2   2060000 perm   2368 sec   (870 perm/sec)   p_kst 4.153592e-01   p_cons 7.106796e-04   p_joint 8.228155e-04

Joint ci ratio: 9.486749e-02	ci left: 7.850493e-04	ci right 8.637010e-04	k: 1705	n:2070000
Cons ci ratio: 1.021010e-01	ci left: 6.752556e-04	ci right 7.483751e-04	k: 1472	n:2070000
KS ci ratio: 3.232388e-03	ci left: 4.146986e-01	ci right 4.160417e-01	k: 859816	n:2070000
PLCH2   2070000 perm   2388 sec   (867 perm/sec)   p_kst 4.153700e-01   p_cons 7.111111e-04   p_joint 8.236715e-04

Joint ci ratio: 9.456305e-02	ci left: 7.864383e-04	ci right 8.649622e-04	k: 1716	n:2080000
Cons ci ratio: 1.017218e-01	ci left: 6.771629e-04	ci right 7.502004e-04	k: 1483	n:2080000
KS ci ratio: 3.224646e-03	ci left: 4.146946e-01	ci right 4.160345e-01	k: 863958	n:2080000
PLCH2   2080000 perm   2409 sec   (864 perm/sec)   p_kst 4.153644e-01   p_cons 7.129808e-04   p_joint 8.250000e-04

Joint ci ratio: 9.426153e-02	ci left: 7.878143e-04	ci right 8.662110e-04	k: 1727	n:2090000
Cons ci ratio: 1.014147e-01	ci left: 6.781197e-04	ci right 7.510264e-04	k: 1492	n:2090000
KS ci ratio: 3.216886e-03	ci left: 4.147016e-01	ci right 4.160383e-01	k: 868123	n:2090000
PLCH2   2090000 perm   2429 sec   (860 perm/sec)   p_kst 4.153699e-01   p_cons 7.138756e-04   p_joint 8.263158e-04

Joint ci ratio: 9.409836e-02	ci left: 7.868527e-04	ci right 8.650106e-04	k: 1733	n:2100000
Cons ci ratio: 1.012116e-01	ci left: 6.776753e-04	ci right 7.503796e-04	k: 1498	n:2100000
KS ci ratio: 3.209317e-03	ci left: 4.146881e-01	ci right 4.160216e-01	k: 872245	n:2100000
PLCH2   2100000 perm   2450 sec   (857 perm/sec)   p_kst 4.153548e-01   p_cons 7.133333e-04   p_joint 8.252381e-04

Joint ci ratio: 9.388204e-02	ci left: 7.868259e-04	ci right 8.647916e-04	k: 1741	n:2110000
Cons ci ratio: 1.009425e-01	ci left: 6.781592e-04	ci right 7.507106e-04	k: 1506	n:2110000
KS ci ratio: 3.201617e-03	ci left: 4.147027e-01	ci right 4.160330e-01	k: 876426	n:2110000
PLCH2   2110000 perm   2471 sec   (854 perm/sec)   p_kst 4.153678e-01   p_cons 7.137441e-04   p_joint 8.251185e-04

Joint ci ratio: 9.369401e-02	ci left: 7.863389e-04	ci right 8.640917e-04	k: 1748	n:2120000
Cons ci ratio: 1.007755e-01	ci left: 6.772593e-04	ci right 7.495875e-04	k: 1511	n:2120000
KS ci ratio: 3.193883e-03	ci left: 4.147309e-01	ci right 4.160580e-01	k: 880636	n:2120000
PLCH2   2120000 perm   2492 sec   (851 perm/sec)   p_kst 4.153943e-01   p_cons 7.127358e-04   p_joint 8.245283e-04

Joint ci ratio: 9.348047e-02	ci left: 7.863151e-04	ci right 8.638787e-04	k: 1756	n:2130000
Cons ci ratio: 1.006426e-01	ci left: 6.759103e-04	ci right 7.479936e-04	k: 1515	n:2130000
KS ci ratio: 3.186358e-03	ci left: 4.147353e-01	ci right 4.160593e-01	k: 884796	n:2130000
PLCH2   2130000 perm   2513 sec   (847 perm/sec)   p_kst 4.153972e-01   p_cons 7.112676e-04   p_joint 8.244131e-04

Joint ci ratio: 9.324195e-02	ci left: 7.867481e-04	ci right 8.641457e-04	k: 1765	n:2140000
Cons ci ratio: 1.003781e-01	ci left: 6.763962e-04	ci right 7.483305e-04	k: 1523	n:2140000
KS ci ratio: 3.179109e-03	ci left: 4.147055e-01	ci right 4.160265e-01	k: 888883	n:2140000
PLCH2   2140000 perm   2535 sec   (844 perm/sec)   p_kst 4.153659e-01   p_cons 7.116822e-04   p_joint 8.247664e-04

Joint ci ratio: 9.305773e-02	ci left: 7.862688e-04	ci right 8.634580e-04	k: 1772	n:2150000
Cons ci ratio: 1.001483e-01	ci left: 6.764244e-04	ci right 7.481873e-04	k: 1530	n:2150000
KS ci ratio: 3.171791e-03	ci left: 4.146942e-01	ci right 4.160121e-01	k: 893009	n:2150000
PLCH2   2150000 perm   2556 sec   (841 perm/sec)   p_kst 4.153530e-01   p_cons 7.116279e-04   p_joint 8.241860e-04

Joint ci ratio: 9.277033e-02	ci left: 7.876030e-04	ci right 8.646714e-04	k: 1783	n:2160000
Cons ci ratio: 9.979039e-02	ci left: 6.782581e-04	ci right 7.499433e-04	k: 1541	n:2160000
KS ci ratio: 3.164421e-03	ci left: 4.146987e-01	ci right 4.160135e-01	k: 897169	n:2160000
PLCH2   2160000 perm   2578 sec   (838 perm/sec)   p_kst 4.153560e-01   p_cons 7.134259e-04   p_joint 8.254630e-04

Outputting figure to mutsig2_images.part000000000132/PLCH2.2_4339_2160000_0.41536_0.00071343_0.00082546.png
                gene_name: PLCH2
               theta_stop: 0.100 
                    nperm: 2160000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.00071 
      ci_cons_bounds_left: 0.00068 
     ci_cons_bounds_right: 0.00075 
                  p_joint: 0.00083 
     ci_joint_bounds_left: 0.00079 
    ci_joint_bounds_right: 0.00086 

Current progress: 83 percent done.
PLCXD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.347477e-03	ci left: 9.525257e-01	ci right 9.606056e-01	k: 9567	n:10000
Cons ci ratio: 7.094230e-02	ci left: 2.255330e-01	ci right 2.422223e-01	k: 2338	n:10000
KS ci ratio: 1.734486e-02	ci left: 8.289004e-01	ci right 8.435032e-01	k: 8363	n:10000
PLCXD1   10000 perm   2 sec   (6510 perm/sec)   p_kst 8.363000e-01   p_cons 2.338000e-01   p_joint 9.567000e-01

Outputting figure to mutsig2_images.part000000000132/PLCXD1.2_996_10000_0.8363_0.2338_0.9567.png
                gene_name: PLCXD1
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 85 percent done.
PLCXD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.691387e-02	ci left: 2.468751e-01	ci right 2.640676e-01	k: 2554	n:10000
KS ci ratio: 5.228968e-02	ci left: 3.502859e-01	ci right 3.691959e-01	k: 3597	n:10000
PLCXD2   10000 perm   2 sec   (6530 perm/sec)   p_kst 3.597000e-01   p_cons 2.554000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000132/PLCXD2.2_1151_10000_0.3597_0.2554_1.png
                gene_name: PLCXD2
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
PLD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.491369e-02	ci left: 8.669281e-01	ci right 8.800535e-01	k: 8736	n:10000
KS ci ratio: 1.439627e-02	ci left: 8.746972e-01	ci right 8.874798e-01	k: 8812	n:10000
PLD2   10000 perm   2 sec   (5241 perm/sec)   p_kst 8.812000e-01   p_cons 8.736000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000132/PLD2.2_2898_10000_0.8812_0.8736_1.png
                gene_name: PLD2
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
PLEK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.159900e-03	ci left: 9.641510e-01	ci right 9.711731e-01	k: 9678	n:10000
Cons ci ratio: 3.145295e-03	ci left: 9.919467e-01	ci right 9.951556e-01	k: 9937	n:10000
KS ci ratio: 1.627524e-02	ci left: 8.459069e-01	ci right 8.598868e-01	k: 8530	n:10000
PLEK2   10000 perm   2 sec   (6629 perm/sec)   p_kst 8.530000e-01   p_cons 9.937000e-01   p_joint 9.678000e-01

Outputting figure to mutsig2_images.part000000000132/PLEK2.2_1098_10000_0.853_0.9937_0.9678.png
                gene_name: PLEK2
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 91 percent done.
PLEKHA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.173326e-02	ci left: 1.793015e-01	ci right 1.946813e-01	k: 1869	n:10000
Cons ci ratio: 8.181399e-02	ci left: 1.790063e-01	ci right 1.943767e-01	k: 1866	n:10000
KS ci ratio: 2.187888e-01	ci left: 2.769020e-02	ci right 3.458650e-02	k: 310	n:10000
PLEKHA1   10000 perm   2 sec   (6187 perm/sec)   p_kst 3.100000e-02   p_cons 1.866000e-01   p_joint 1.869000e-01

Joint ci ratio: 1.115012e-01	ci left: 5.494603e-02	ci right 6.148315e-02	k: 1163	n:20000
Cons ci ratio: 5.728680e-02	ci left: 1.842373e-01	ci right 1.951530e-01	k: 3793	n:20000
KS ci ratio: 1.540727e-01	ci left: 2.893010e-02	ci right 3.380740e-02	k: 626	n:20000
PLEKHA1   20000 perm   4 sec   (5491 perm/sec)   p_kst 3.130000e-02   p_cons 1.896500e-01   p_joint 5.815000e-02

Joint ci ratio: 9.134691e-02	ci left: 5.518553e-02	ci right 6.050050e-02	k: 1734	n:30000
Cons ci ratio: 4.664324e-02	ci left: 1.861028e-01	ci right 1.950239e-01	k: 5716	n:30000
KS ci ratio: 1.252860e-01	ci left: 2.961697e-02	ci right 3.360776e-02	k: 947	n:30000
PLEKHA1   30000 perm   6 sec   (5202 perm/sec)   p_kst 3.156667e-02   p_cons 1.905333e-01   p_joint 5.780000e-02

Joint ci ratio: 7.911508e-02	ci left: 5.553273e-02	ci right 6.013172e-02	k: 2312	n:40000
Cons ci ratio: 4.027252e-02	ci left: 1.876291e-01	ci right 1.953657e-01	k: 7659	n:40000
KS ci ratio: 1.086345e-01	ci left: 2.980990e-02	ci right 3.325856e-02	k: 1260	n:40000
PLEKHA1   40000 perm   8 sec   (5003 perm/sec)   p_kst 3.150000e-02   p_cons 1.914750e-01   p_joint 5.780000e-02

Joint ci ratio: 7.080508e-02	ci left: 5.571122e-02	ci right 5.982031e-02	k: 2887	n:50000
Cons ci ratio: 3.592578e-02	ci left: 1.888535e-01	ci right 1.957823e-01	k: 9615	n:50000
KS ci ratio: 9.755797e-02	ci left: 2.975194e-02	ci right 3.282279e-02	k: 1563	n:50000
PLEKHA1   50000 perm   10 sec   (4868 perm/sec)   p_kst 3.126000e-02   p_cons 1.923000e-01   p_joint 5.774000e-02

Outputting figure to mutsig2_images.part000000000132/PLEKHA1.2_1259_50000_0.03126_0.1923_0.05774.png
                gene_name: PLEKHA1
               theta_stop: 0.098 
                    nperm: 50000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.030 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.058 
     ci_joint_bounds_left: 0.056 
    ci_joint_bounds_right: 0.060 

Current progress: 92 percent done.
PLEKHA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.159954e-02	ci left: 7.586885e-01	ci right 7.753556e-01	k: 7671	n:10000
KS ci ratio: 7.559642e-02	ci left: 2.038267e-01	ci right 2.199415e-01	k: 2118	n:10000
PLEKHA3   10000 perm   2 sec   (6609 perm/sec)   p_kst 2.118000e-01   p_cons 7.671000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000132/PLEKHA3.2_935_10000_0.2118_0.7671_1.png
                gene_name: PLEKHA3
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
PLEKHA7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.714180e-02	ci left: 3.990427e-01	ci right 4.184105e-01	k: 4087	n:10000
KS ci ratio: 1.468336e-02	ci left: 8.704028e-01	ci right 8.833768e-01	k: 8770	n:10000
PLEKHA7   10000 perm   2 sec   (5274 perm/sec)   p_kst 8.770000e-01   p_cons 4.087000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000132/PLEKHA7.2_3458_10000_0.877_0.4087_1.png
                gene_name: PLEKHA7
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
PLEKHA8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.168161e-02	ci left: 9.129648e-01	ci right 9.237900e-01	k: 9185	n:10000
Cons ci ratio: 3.181024e-02	ci left: 5.932311e-01	ci right 6.125089e-01	k: 6029	n:10000
KS ci ratio: 2.790168e-02	ci left: 6.543436e-01	ci right 6.729609e-01	k: 6637	n:10000
PLEKHA8   10000 perm   1 sec   (6694 perm/sec)   p_kst 6.637000e-01   p_cons 6.029000e-01   p_joint 9.185000e-01

Outputting figure to mutsig2_images.part000000000132/PLEKHA8.2_1375_10000_0.6637_0.6029_0.9185.png
                gene_name: PLEKHA8
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 98 percent done.
PLEKHG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.854123e-02	ci left: 4.985503e-01	ci right 5.182448e-01	k: 5084	n:10000
Cons ci ratio: 3.944572e-02	ci left: 4.869525e-01	ci right 5.066494e-01	k: 4968	n:10000
KS ci ratio: 3.340178e-02	ci left: 5.695523e-01	ci right 5.890015e-01	k: 5793	n:10000
PLEKHG2   10000 perm   2 sec   (4441 perm/sec)   p_kst 5.793000e-01   p_cons 4.968000e-01   p_joint 5.084000e-01

Outputting figure to mutsig2_images.part000000000132/PLEKHG2.2_4233_10000_0.5793_0.4968_0.5084.png
                gene_name: PLEKHG2
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000132
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 132 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1726>
Subject: Job 8004413: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1726>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000133> was used as the working directory.
Started at Sun Nov 11 15:13:10 2012
Results reported at Sun Nov 11 15:23:44 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000133.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000133.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 133  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000133.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    619.03 sec.
    Max Memory :      4822 MB
    Max Swap   :      7095 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
133
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 133
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 133: processing genes 11943 - 12033
Calculating significance of each gene.
Using projection method.
11943	PLEKHG3	9.747504e-01
11944	PLEKHG4	9.855709e-01
11945	PLEKHG4B	8.985437e-01
11946	PLEKHG5	1
11947	PLEKHG6	1
11948	PLEKHG7	6.686722e-01
11949	PLEKHH1	4.672216e-01
11950	PLEKHH2	8.046697e-01
11951	PLEKHH3	4.721358e-01
11952	PLEKHJ1	1
11953	PLEKHM1	9.006270e-01
11954	PLEKHM2	1
11955	PLEKHM3	3.819552e-01
11956	PLEKHN1	8.214931e-01
11957	PLEKHO1	1.778783e-01
11958	PLEKHO2	7.706094e-02
11959	PLG	1
11960	PLIN1	4.378844e-01
11961	PLIN2	1
11962	PLIN3	6.942989e-01
11963	PLIN4	7.431005e-01
11964	PLIN5	6.784322e-01
11965	PLK1	6.423139e-01
11966	PLK1S1	1.068085e-01
11967	PLK2	8.304682e-01
11968	PLK3	5.002801e-01
11969	PLK4	9.316776e-01
11970	PLLP	1
11971	PLN	1.924230e-01
11972	PLOD1	7.423427e-01
11973	PLOD2	9.133990e-02
11974	PLOD3	2.652613e-01
11975	PLP1	2.524526e-01
11976	PLP2	1.104349e-01
11977	PLRG1	5.977046e-02
11978	PLS1	1
11979	PLS3	7.234151e-01
11980	PLSCR1	4.036984e-01
11981	PLSCR2	1.729896e-02
11982	PLSCR3	1
11983	PLSCR4	3.277462e-01
11984	PLSCR5	6.841398e-02
11985	PLTP	6.187335e-01
11986	PLUNC	3.549196e-02
11987	PLVAP	6.660171e-01
11988	PLXDC1	1
11989	PLXDC2	1
11990	PLXNA1	7.497561e-01
11991	PLXNA2	1
11992	PLXNA3	9.610537e-01
11993	PLXNA4	7.983125e-01
11994	PLXNB1	9.880211e-01
11995	PLXNB2	9.978952e-01
11996	PLXNB3	8.610039e-01
11997	PLXNC1	8.696837e-01
11998	PLXND1	1
11999	PM20D1	2.335576e-01
12000/18094 12000	PM20D2	1
12001	PMAIP1	1
12002	PMCH	1.045592e-02
12003	PMEPA1	1
12004	PMF1	5.260475e-01
12005	PMFBP1	1
12006	PML	1
12007	PMM1	4.506466e-01
12008	PMM2	1
12009	PMP2	1
12010	PMP22	1
12011	PMPCA	1
12012	PMPCB	2.533876e-01
12013	PMS1	7.897715e-02
12014	PMS2	3.446606e-01
12015	PMVK	1
12016	PNCK	2.038218e-01
12017	PNKD	1
12018	PNKP	1
12019	PNLDC1	4.917584e-01
12020	PNLIP	2.256807e-04
12021	PNLIPRP1	1
12022	PNLIPRP2	1
12023	PNLIPRP3	2.803740e-06
12024	PNMA1	1
12025	PNMA2	1.836580e-01
12026	PNMA3	5.629914e-01
12027	PNMA5	3.405839e-02
12028	PNMAL1	5.325730e-01
12029	PNMAL2	7.386357e-01
12030	PNMT	2.324804e-01
12031	PNN	8.019570e-01
12032	PNO1	1
12033	PNOC	3.357274e-01
Done

Running MutSig 2:
Scatter job 133: processing genes 11943 - 12033
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
PLXNA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.339773e-01	ci left: 2.410011e-02	ci right 3.057918e-02	k: 272	n:10000
Cons ci ratio: 3.872667e-02	ci left: 4.961503e-01	ci right 5.158462e-01	k: 5060	n:10000
KS ci ratio: 3.415481e-01	ci left: 1.078106e-02	ci right 1.530921e-02	k: 129	n:10000
PLXNA4   10000 perm   3 sec   (3999 perm/sec)   p_kst 1.290000e-02   p_cons 5.060000e-01   p_joint 2.720000e-02

Joint ci ratio: 1.747179e-01	ci left: 2.240180e-02	ci right 2.673793e-02	k: 490	n:20000
Cons ci ratio: 2.730933e-02	ci left: 5.004456e-01	ci right 5.143523e-01	k: 10148	n:20000
KS ci ratio: 2.391972e-01	ci left: 1.166433e-02	ci right 1.487948e-02	k: 264	n:20000
PLXNA4   20000 perm   8 sec   (2629 perm/sec)   p_kst 1.320000e-02   p_cons 5.074000e-01   p_joint 2.450000e-02

Joint ci ratio: 1.220021e-01	ci left: 3.123366e-02	ci right 3.532405e-02	k: 997	n:30000
Cons ci ratio: 2.216510e-02	ci left: 5.047259e-01	ci right 5.160721e-01	k: 15312	n:30000
KS ci ratio: 1.944396e-01	ci left: 1.206606e-02	ci right 1.469610e-02	k: 400	n:30000
PLXNA4   30000 perm   10 sec   (2877 perm/sec)   p_kst 1.333333e-02   p_cons 5.104000e-01   p_joint 3.323333e-02

Joint ci ratio: 1.183365e-01	ci left: 2.511787e-02	ci right 2.830134e-02	k: 1067	n:40000
Cons ci ratio: 1.915836e-02	ci left: 5.064632e-01	ci right 5.162852e-01	k: 20455	n:40000
KS ci ratio: 1.696272e-01	ci left: 1.205658e-02	ci right 1.431491e-02	k: 526	n:40000
PLXNA4   40000 perm   13 sec   (2996 perm/sec)   p_kst 1.315000e-02   p_cons 5.113750e-01   p_joint 2.667500e-02

Joint ci ratio: 1.080249e-01	ci left: 2.427217e-02	ci right 2.706327e-02	k: 1282	n:50000
Cons ci ratio: 1.717759e-02	ci left: 5.057678e-01	ci right 5.145510e-01	k: 25508	n:50000
KS ci ratio: 1.527509e-01	ci left: 1.200623e-02	ci right 1.401090e-02	k: 649	n:50000
PLXNA4   50000 perm   16 sec   (3065 perm/sec)   p_kst 1.298000e-02   p_cons 5.101600e-01   p_joint 2.564000e-02

Joint ci ratio: 1.049257e-01	ci left: 2.153924e-02	ci right 2.394056e-02	k: 1363	n:60000
Cons ci ratio: 1.569073e-02	ci left: 5.058413e-01	ci right 5.138578e-01	k: 30591	n:60000
KS ci ratio: 1.375776e-01	ci left: 1.243084e-02	ci right 1.428334e-02	k: 800	n:60000
PLXNA4   60000 perm   19 sec   (3101 perm/sec)   p_kst 1.333333e-02   p_cons 5.098500e-01   p_joint 2.271667e-02

Joint ci ratio: 9.921429e-02	ci left: 2.073093e-02	ci right 2.290896e-02	k: 1526	n:70000
Cons ci ratio: 1.449139e-02	ci left: 5.073608e-01	ci right 5.147811e-01	k: 35775	n:70000
KS ci ratio: 1.273378e-01	ci left: 1.250596e-02	ci right 1.422045e-02	k: 934	n:70000
PLXNA4   70000 perm   22 sec   (3114 perm/sec)   p_kst 1.334286e-02   p_cons 5.110714e-01   p_joint 2.180000e-02

Joint ci ratio: 8.873657e-02	ci left: 2.275481e-02	ci right 2.487992e-02	k: 1904	n:80000
Cons ci ratio: 1.345808e-02	ci left: 5.112050e-01	ci right 5.181439e-01	k: 41174	n:80000
KS ci ratio: 1.187522e-01	ci left: 1.263894e-02	ci right 1.424663e-02	k: 1074	n:80000
PLXNA4   80000 perm   26 sec   (3110 perm/sec)   p_kst 1.342500e-02   p_cons 5.146750e-01   p_joint 2.380000e-02

Joint ci ratio: 8.210756e-02	ci left: 2.368488e-02	ci right 2.572369e-02	k: 2222	n:90000
Cons ci ratio: 1.267904e-02	ci left: 5.117733e-01	ci right 5.183146e-01	k: 46354	n:90000
KS ci ratio: 1.123557e-01	ci left: 1.259415e-02	ci right 1.410412e-02	k: 1200	n:90000
PLXNA4   90000 perm   29 sec   (3095 perm/sec)   p_kst 1.333333e-02   p_cons 5.150444e-01   p_joint 2.468889e-02

Joint ci ratio: 7.655408e-02	ci left: 2.457100e-02	ci right 2.653665e-02	k: 2554	n:100000
Cons ci ratio: 1.202178e-02	ci left: 5.122171e-01	ci right 5.184220e-01	k: 51532	n:100000
KS ci ratio: 1.064464e-01	ci left: 1.266729e-02	ci right 1.410114e-02	k: 1337	n:100000
PLXNA4   100000 perm   32 sec   (3085 perm/sec)   p_kst 1.337000e-02   p_cons 5.153200e-01   p_joint 2.554000e-02

Joint ci ratio: 7.513853e-02	ci left: 2.323743e-02	ci right 2.506050e-02	k: 2655	n:110000
Cons ci ratio: 1.143404e-02	ci left: 5.135965e-01	ci right 5.195118e-01	k: 56821	n:110000
KS ci ratio: 1.018722e-01	ci left: 1.260475e-02	ci right 1.396654e-02	k: 1460	n:110000
PLXNA4   110000 perm   36 sec   (3066 perm/sec)   p_kst 1.327273e-02   p_cons 5.165545e-01   p_joint 2.413636e-02

Joint ci ratio: 6.744060e-02	ci left: 2.645904e-02	ci right 2.831389e-02	k: 3285	n:120000
Cons ci ratio: 1.095687e-02	ci left: 5.132846e-01	ci right 5.189479e-01	k: 61934	n:120000
KS ci ratio: 9.771614e-02	ci left: 1.258627e-02	ci right 1.388741e-02	k: 1587	n:120000
PLXNA4   120000 perm   39 sec   (3042 perm/sec)   p_kst 1.322500e-02   p_cons 5.161167e-01   p_joint 2.737500e-02

Outputting figure to mutsig2_images.part000000000133/PLXNA4.21_6123_120000_0.013225_0.51612_0.027375.png
                gene_name: PLXNA4
               theta_stop: 0.098 
                    nperm: 120000 
                     p_ks: 0.013 
        ci_ks_bounds_left: 0.013 
       ci_ks_bounds_right: 0.014 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.027 
     ci_joint_bounds_left: 0.026 
    ci_joint_bounds_right: 0.028 

Current progress: 2 percent done.
PLXNA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.536921e-02	ci left: 8.599833e-01	ci right 8.734023e-01	k: 8668	n:10000
KS ci ratio: 3.216342e-02	ci left: 5.879114e-01	ci right 6.072317e-01	k: 5976	n:10000
PLXNA1   10000 perm   2 sec   (4550 perm/sec)   p_kst 5.976000e-01   p_cons 8.668000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000133/PLXNA1.11_5815_10000_0.5976_0.8668_1.png
                gene_name: PLXNA1
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 3 percent done.
PNLIP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.350873e-02	ci left: 8.876989e-01	ci right 8.998707e-01	k: 8939	n:10000
Cons ci ratio: 2.874356e-02	ci left: 6.408607e-01	ci right 6.596517e-01	k: 6503	n:10000
KS ci ratio: 1.221143e-02	ci left: 9.058655e-01	ci right 9.170934e-01	k: 9116	n:10000
PNLIP   10000 perm   2 sec   (5957 perm/sec)   p_kst 9.116000e-01   p_cons 6.503000e-01   p_joint 8.939000e-01

Outputting figure to mutsig2_images.part000000000133/PNLIP.11_1446_10000_0.9116_0.6503_0.8939.png
                gene_name: PNLIP
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 5 percent done.
PNLIPRP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.449635e-02	ci left: 1.695643e-01	ci right 1.846243e-01	k: 1770	n:10000
Cons ci ratio: 7.507969e-02	ci left: 2.060944e-01	ci right 2.222724e-01	k: 2141	n:10000
KS ci ratio: 1.021741e-01	ci left: 1.217066e-01	ci right 1.349108e-01	k: 1282	n:10000
PNLIPRP3   10000 perm   2 sec   (5511 perm/sec)   p_kst 1.282000e-01   p_cons 2.141000e-01   p_joint 1.770000e-01

Joint ci ratio: 6.593066e-02	ci left: 1.452254e-01	ci right 1.551765e-01	k: 3003	n:20000
Cons ci ratio: 5.256722e-02	ci left: 2.117989e-01	ci right 2.232833e-01	k: 4350	n:20000
KS ci ratio: 7.184833e-02	ci left: 1.248759e-01	ci right 1.342321e-01	k: 2590	n:20000
PNLIPRP3   20000 perm   4 sec   (4968 perm/sec)   p_kst 1.295000e-01   p_cons 2.175000e-01   p_joint 1.501500e-01

Outputting figure to mutsig2_images.part000000000133/PNLIPRP3.11_1452_20000_0.1295_0.2175_0.15015.png
                gene_name: PNLIPRP3
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 7 percent done.
PLEKHH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.057999e-01	ci left: 1.142783e-01	ci right 1.271436e-01	k: 1206	n:10000
Cons ci ratio: 2.098973e-01	ci left: 3.015459e-02	ci right 3.732038e-02	k: 336	n:10000
KS ci ratio: 3.558222e-02	ci left: 5.383830e-01	ci right 5.579889e-01	k: 5482	n:10000
PLEKHH2   10000 perm   2 sec   (4269 perm/sec)   p_kst 5.482000e-01   p_cons 3.360000e-02   p_joint 1.206000e-01

Joint ci ratio: 7.752260e-02	ci left: 1.089387e-01	ci right 1.177741e-01	k: 2266	n:20000
Cons ci ratio: 1.499261e-01	ci left: 3.056735e-02	ci right 3.556960e-02	k: 660	n:20000
KS ci ratio: 2.491166e-02	ci left: 5.462274e-01	ci right 5.600571e-01	k: 11063	n:20000
PLEKHH2   20000 perm   5 sec   (4059 perm/sec)   p_kst 5.531500e-01   p_cons 3.300000e-02   p_joint 1.133000e-01

Joint ci ratio: 6.622773e-02	ci left: 1.010930e-01	ci right 1.080505e-01	k: 3136	n:30000
Cons ci ratio: 1.213123e-01	ci left: 3.158952e-02	ci right 3.570144e-02	k: 1008	n:30000
KS ci ratio: 2.040457e-02	ci left: 5.459508e-01	ci right 5.572392e-01	k: 16548	n:30000
PLEKHH2   30000 perm   7 sec   (4052 perm/sec)   p_kst 5.516000e-01   p_cons 3.360000e-02   p_joint 1.045333e-01

Joint ci ratio: 4.884688e-02	ci left: 1.352772e-01	ci right 1.420754e-01	k: 5546	n:40000
Cons ci ratio: 1.052354e-01	ci left: 3.175807e-02	ci right 3.531007e-02	k: 1340	n:40000
KS ci ratio: 1.767732e-02	ci left: 5.465350e-01	ci right 5.563075e-01	k: 22057	n:40000
PLEKHH2   40000 perm   10 sec   (3998 perm/sec)   p_kst 5.514250e-01   p_cons 3.350000e-02   p_joint 1.386500e-01

Joint ci ratio: 4.851749e-02	ci left: 1.126712e-01	ci right 1.182935e-01	k: 5773	n:50000
Cons ci ratio: 9.361401e-02	ci left: 3.229175e-02	ci right 3.548266e-02	k: 1693	n:50000
KS ci ratio: 1.583244e-02	ci left: 5.463872e-01	ci right 5.551269e-01	k: 27538	n:50000
PLEKHH2   50000 perm   13 sec   (3946 perm/sec)   p_kst 5.507600e-01   p_cons 3.386000e-02   p_joint 1.154600e-01

Outputting figure to mutsig2_images.part000000000133/PLEKHH2.9_4598_50000_0.55076_0.03386_0.11546.png
                gene_name: PLEKHH2
               theta_stop: 0.094 
                    nperm: 50000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.034 
      ci_cons_bounds_left: 0.032 
     ci_cons_bounds_right: 0.035 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 8 percent done.
PLXNC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.648848e-02	ci left: 6.773041e-01	ci right 6.955872e-01	k: 6865	n:10000
Cons ci ratio: 3.781548e-02	ci left: 5.080524e-01	ci right 5.277371e-01	k: 5179	n:10000
KS ci ratio: 4.049311e-02	ci left: 4.738613e-01	ci right 4.935482e-01	k: 4837	n:10000
PLXNC1   10000 perm   2 sec   (4617 perm/sec)   p_kst 4.837000e-01   p_cons 5.179000e-01   p_joint 6.865000e-01

Outputting figure to mutsig2_images.part000000000133/PLXNC1.9_4831_10000_0.4837_0.5179_0.6865.png
                gene_name: PLXNC1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 10 percent done.
PLEKHG4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.978425e-02	ci left: 7.889804e-01	ci right 8.048463e-01	k: 7970	n:10000
Cons ci ratio: 4.360219e-02	ci left: 4.371223e-01	ci right 4.567087e-01	k: 4469	n:10000
KS ci ratio: 2.768326e-02	ci left: 6.578667e-01	ci right 6.764359e-01	k: 6672	n:10000
PLEKHG4B   10000 perm   2 sec   (5114 perm/sec)   p_kst 6.672000e-01   p_cons 4.469000e-01   p_joint 7.970000e-01

Outputting figure to mutsig2_images.part000000000133/PLEKHG4B.7_3888_10000_0.6672_0.4469_0.797.png
                gene_name: PLEKHG4B
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 12 percent done.
PMFBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.391754e-02	ci left: 3.363745e-01	ci right 3.551154e-01	k: 3457	n:10000
Cons ci ratio: 4.306825e-02	ci left: 4.432085e-01	ci right 4.628189e-01	k: 4530	n:10000
KS ci ratio: 6.967923e-02	ci left: 2.319523e-01	ci right 2.487992e-01	k: 2403	n:10000
PMFBP1   10000 perm   2 sec   (5661 perm/sec)   p_kst 2.403000e-01   p_cons 4.530000e-01   p_joint 3.457000e-01

Outputting figure to mutsig2_images.part000000000133/PMFBP1.7_3164_10000_0.2403_0.453_0.3457.png
                gene_name: PMFBP1
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 13 percent done.
PMS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.993416e-02	ci left: 3.716666e-01	ci right 3.908027e-01	k: 3812	n:10000
Cons ci ratio: 1.337314e-02	ci left: 8.896462e-01	ci right 9.017222e-01	k: 8958	n:10000
KS ci ratio: 7.582348e-02	ci left: 2.028409e-01	ci right 2.189279e-01	k: 2108	n:10000
PMS1   10000 perm   2 sec   (5349 perm/sec)   p_kst 2.108000e-01   p_cons 8.958000e-01   p_joint 3.812000e-01

Outputting figure to mutsig2_images.part000000000133/PMS1.7_2847_10000_0.2108_0.8958_0.3812.png
                gene_name: PMS1
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 15 percent done.
PLEKHH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.289058e-02	ci left: 5.770748e-01	ci right 5.964746e-01	k: 5868	n:10000
Cons ci ratio: 3.084238e-02	ci left: 6.079920e-01	ci right 6.271395e-01	k: 6176	n:10000
KS ci ratio: 4.475820e-02	ci left: 4.242563e-01	ci right 4.437821e-01	k: 4340	n:10000
PLEKHH1   10000 perm   2 sec   (5145 perm/sec)   p_kst 4.340000e-01   p_cons 6.176000e-01   p_joint 5.868000e-01

Outputting figure to mutsig2_images.part000000000133/PLEKHH1.5_4207_10000_0.434_0.6176_0.5868.png
                gene_name: PLEKHH1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 17 percent done.
PLEKHM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.203014e-02	ci left: 1.782191e-01	ci right 1.935643e-01	k: 1858	n:10000
Cons ci ratio: 1.276264e-01	ci left: 8.067319e-02	ci right 9.176924e-02	k: 861	n:10000
KS ci ratio: 7.479096e-02	ci left: 2.073764e-01	ci right 2.235897e-01	k: 2154	n:10000
PLEKHM1   10000 perm   2 sec   (5411 perm/sec)   p_kst 2.154000e-01   p_cons 8.610000e-02   p_joint 1.858000e-01

Joint ci ratio: 5.422742e-02	ci left: 2.015018e-01	ci right 2.127835e-01	k: 4142	n:20000
Cons ci ratio: 8.942667e-02	ci left: 8.371703e-02	ci right 9.160333e-02	k: 1752	n:20000
KS ci ratio: 5.252865e-02	ci left: 2.120465e-01	ci right 2.235357e-01	k: 4355	n:20000
PLEKHM1   20000 perm   4 sec   (4983 perm/sec)   p_kst 2.177500e-01   p_cons 8.760000e-02   p_joint 2.071000e-01

Outputting figure to mutsig2_images.part000000000133/PLEKHM1.5_3215_20000_0.21775_0.0876_0.2071.png
                gene_name: PLEKHM1
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.088 
      ci_cons_bounds_left: 0.084 
     ci_cons_bounds_right: 0.092 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 18 percent done.
PLEKHO2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.333861e-02	ci left: 4.401153e-01	ci right 4.597139e-01	k: 4499	n:10000
Cons ci ratio: 7.281323e-02	ci left: 2.164518e-01	ci right 2.329089e-01	k: 2246	n:10000
KS ci ratio: 5.885386e-02	ci left: 2.981652e-01	ci right 3.163472e-01	k: 3072	n:10000
PLEKHO2   10000 perm   2 sec   (5860 perm/sec)   p_kst 3.072000e-01   p_cons 2.246000e-01   p_joint 4.499000e-01

Outputting figure to mutsig2_images.part000000000133/PLEKHO2.5_1497_10000_0.3072_0.2246_0.4499.png
                gene_name: PLEKHO2
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 20 percent done.
PLIN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.813331e-02	ci left: 1.308067e-01	ci right 1.444052e-01	k: 1375	n:10000
Cons ci ratio: 3.384917e-02	ci left: 5.630346e-01	ci right 5.825230e-01	k: 5728	n:10000
KS ci ratio: 1.491591e-01	ci left: 5.976289e-02	ci right 6.949263e-02	k: 645	n:10000
PLIN4   10000 perm   2 sec   (5159 perm/sec)   p_kst 6.450000e-02   p_cons 5.728000e-01   p_joint 1.375000e-01

Joint ci ratio: 6.156279e-02	ci left: 1.633359e-01	ci right 1.737607e-01	k: 3370	n:20000
Cons ci ratio: 2.357159e-02	ci left: 5.734242e-01	ci right 5.871525e-01	k: 11606	n:20000
KS ci ratio: 1.015387e-01	ci left: 6.581811e-02	ci right 7.290771e-02	k: 1386	n:20000
PLIN4   20000 perm   4 sec   (4828 perm/sec)   p_kst 6.930000e-02   p_cons 5.803000e-01   p_joint 1.685000e-01

Joint ci ratio: 4.731930e-02	ci left: 1.817429e-01	ci right 1.905846e-01	k: 5584	n:30000
Cons ci ratio: 1.981326e-02	ci left: 5.604689e-01	ci right 5.717183e-01	k: 16983	n:30000
KS ci ratio: 8.358858e-02	ci left: 6.543802e-02	ci right 7.117926e-02	k: 2048	n:30000
PLIN4   30000 perm   6 sec   (4645 perm/sec)   p_kst 6.826667e-02   p_cons 5.661000e-01   p_joint 1.861333e-01

Outputting figure to mutsig2_images.part000000000133/PLIN4.5_4098_30000_0.068267_0.5661_0.18613.png
                gene_name: PLIN4
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.068 
        ci_ks_bounds_left: 0.065 
       ci_ks_bounds_right: 0.071 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 22 percent done.
PLOD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.312653e-02	ci left: 7.331027e-01	ci right 7.503563e-01	k: 7418	n:10000
Cons ci ratio: 1.432059e-02	ci left: 8.758224e-01	ci right 8.885540e-01	k: 8823	n:10000
KS ci ratio: 4.056613e-02	ci left: 4.729622e-01	ci right 4.926478e-01	k: 4828	n:10000
PLOD2   10000 perm   2 sec   (6055 perm/sec)   p_kst 4.828000e-01   p_cons 8.823000e-01   p_joint 7.418000e-01

Outputting figure to mutsig2_images.part000000000133/PLOD2.5_2357_10000_0.4828_0.8823_0.7418.png
                gene_name: PLOD2
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 23 percent done.
PLOD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.374621e-01	ci left: 7.000876e-02	ci right 8.044030e-02	k: 751	n:10000
Cons ci ratio: 9.719346e-02	ci left: 1.330589e-01	ci right 1.467516e-01	k: 1398	n:10000
KS ci ratio: 1.126523e-01	ci left: 1.018840e-01	ci right 1.141454e-01	k: 1079	n:10000
PLOD3   10000 perm   2 sec   (5629 perm/sec)   p_kst 1.079000e-01   p_cons 1.398000e-01   p_joint 7.510000e-02

Joint ci ratio: 6.882744e-02	ci left: 1.347259e-01	ci right 1.443791e-01	k: 2790	n:20000
Cons ci ratio: 6.901435e-02	ci left: 1.340854e-01	ci right 1.437198e-01	k: 2777	n:20000
KS ci ratio: 8.041197e-02	ci left: 1.019135e-01	ci right 1.105014e-01	k: 2123	n:20000
PLOD3   20000 perm   4 sec   (5137 perm/sec)   p_kst 1.061500e-01   p_cons 1.388500e-01   p_joint 1.395000e-01

Outputting figure to mutsig2_images.part000000000133/PLOD3.5_2293_20000_0.10615_0.13885_0.1395.png
                gene_name: PLOD3
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 25 percent done.
PLRG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.027066e-02	ci left: 6.168328e-01	ci right 6.358936e-01	k: 6264	n:10000
Cons ci ratio: 3.648931e-02	ci left: 5.258660e-01	ci right 5.455132e-01	k: 5357	n:10000
KS ci ratio: 3.971484e-02	ci left: 4.835542e-01	ci right 5.032497e-01	k: 4934	n:10000
PLRG1   10000 perm   2 sec   (6255 perm/sec)   p_kst 4.934000e-01   p_cons 5.357000e-01   p_joint 6.264000e-01

Outputting figure to mutsig2_images.part000000000133/PLRG1.5_1605_10000_0.4934_0.5357_0.6264.png
                gene_name: PLRG1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 27 percent done.
PLVAP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.042192e-02	ci left: 1.509997e-01	ci right 1.654000e-01	k: 1581	n:10000
Cons ci ratio: 6.736596e-03	ci left: 9.679427e-01	ci right 9.745790e-01	k: 9714	n:10000
KS ci ratio: 1.360009e-01	ci left: 7.146123e-02	ci right 8.198693e-02	k: 766	n:10000
PLVAP   10000 perm   2 sec   (6621 perm/sec)   p_kst 7.660000e-02   p_cons 9.714000e-01   p_joint 1.581000e-01

Joint ci ratio: 6.444783e-02	ci left: 1.510458e-01	ci right 1.611544e-01	k: 3121	n:20000
Cons ci ratio: 4.911619e-03	ci left: 9.671263e-01	ci right 9.719359e-01	k: 19392	n:20000
KS ci ratio: 9.762416e-02	ci left: 7.094677e-02	ci right 7.827748e-02	k: 1491	n:20000
PLVAP   20000 perm   3 sec   (5835 perm/sec)   p_kst 7.455000e-02   p_cons 9.696000e-01   p_joint 1.560500e-01

Outputting figure to mutsig2_images.part000000000133/PLVAP.5_1353_20000_0.07455_0.9696_0.15605.png
                gene_name: PLVAP
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.075 
        ci_ks_bounds_left: 0.071 
       ci_ks_bounds_right: 0.078 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 28 percent done.
PLXNA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.395987e-02	ci left: 8.811437e-01	ci right 8.936296e-01	k: 8875	n:10000
Cons ci ratio: 6.184739e-03	ci left: 9.725959e-01	ci right 9.787227e-01	k: 9758	n:10000
KS ci ratio: 3.233755e-02	ci left: 5.853022e-01	ci right 6.046425e-01	k: 5950	n:10000
PLXNA3   10000 perm   2 sec   (4815 perm/sec)   p_kst 5.950000e-01   p_cons 9.758000e-01   p_joint 8.875000e-01

Outputting figure to mutsig2_images.part000000000133/PLXNA3.5_5744_10000_0.595_0.9758_0.8875.png
                gene_name: PLXNA3
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 30 percent done.
PLXND1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.178368e-02	ci left: 5.936327e-01	ci right 6.129071e-01	k: 6033	n:10000
Cons ci ratio: 2.568545e-02	ci left: 6.905077e-01	ci right 7.085759e-01	k: 6996	n:10000
KS ci ratio: 4.409943e-02	ci left: 4.315362e-01	ci right 4.510980e-01	k: 4413	n:10000
PLXND1   10000 perm   2 sec   (4789 perm/sec)   p_kst 4.413000e-01   p_cons 6.996000e-01   p_joint 6.033000e-01

Outputting figure to mutsig2_images.part000000000133/PLXND1.5_5922_10000_0.4413_0.6996_0.6033.png
                gene_name: PLXND1
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 32 percent done.
PMS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.506850e-02	ci left: 8.645785e-01	ci right 8.778045e-01	k: 8713	n:10000
KS ci ratio: 3.325128e-02	ci left: 5.717587e-01	ci right 5.911938e-01	k: 5815	n:10000
PMS2   10000 perm   2 sec   (5311 perm/sec)   p_kst 5.815000e-01   p_cons 8.713000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000133/PMS2.5_2649_10000_0.5815_0.8713_1.png
                gene_name: PMS2
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 33 percent done.
PNMA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.670614e-02	ci left: 1.622916e-01	ci right 1.771013e-01	k: 1696	n:10000
Cons ci ratio: 1.040908e-01	ci left: 1.176982e-01	ci right 1.307216e-01	k: 1241	n:10000
KS ci ratio: 7.644396e-02	ci left: 2.001794e-01	ci right 2.161909e-01	k: 2081	n:10000
PNMA5   10000 perm   2 sec   (6333 perm/sec)   p_kst 2.081000e-01   p_cons 1.241000e-01   p_joint 1.696000e-01

Joint ci ratio: 5.723096e-02	ci left: 1.845340e-01	ci right 1.954563e-01	k: 3799	n:20000
Cons ci ratio: 7.375725e-02	ci left: 1.191670e-01	ci right 1.283427e-01	k: 2474	n:20000
KS ci ratio: 5.398102e-02	ci left: 2.029866e-01	ci right 2.142982e-01	k: 4172	n:20000
PNMA5   20000 perm   4 sec   (5384 perm/sec)   p_kst 2.086000e-01   p_cons 1.237000e-01   p_joint 1.899500e-01

Outputting figure to mutsig2_images.part000000000133/PNMA5.5_1351_20000_0.2086_0.1237_0.18995.png
                gene_name: PNMA5
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 35 percent done.
PLEKHG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.788599e-02	ci left: 1.313941e-01	ci right 1.450174e-01	k: 1381	n:10000
Cons ci ratio: 2.352500e-02	ci left: 7.264344e-01	ci right 7.438284e-01	k: 7352	n:10000
KS ci ratio: 1.492827e-01	ci left: 5.966639e-02	ci right 6.938918e-02	k: 644	n:10000
PLEKHG3   10000 perm   2 sec   (5285 perm/sec)   p_kst 6.440000e-02   p_cons 7.352000e-01   p_joint 1.381000e-01

Joint ci ratio: 6.924610e-02	ci left: 1.332972e-01	ci right 1.429083e-01	k: 2761	n:20000
Cons ci ratio: 1.721237e-02	ci left: 7.154320e-01	ci right 7.279035e-01	k: 14434	n:20000
KS ci ratio: 1.067153e-01	ci left: 5.981772e-02	ci right 6.660995e-02	k: 1263	n:20000
PLEKHG3   20000 perm   4 sec   (4866 perm/sec)   p_kst 6.315000e-02   p_cons 7.217000e-01   p_joint 1.380500e-01

Joint ci ratio: 5.327707e-02	ci left: 1.487787e-01	ci right 1.569553e-01	k: 4585	n:30000
Cons ci ratio: 1.364406e-02	ci left: 7.283908e-01	ci right 7.384307e-01	k: 22003	n:30000
KS ci ratio: 8.936817e-02	ci left: 5.756710e-02	ci right 6.298511e-02	k: 1807	n:30000
PLEKHG3   30000 perm   6 sec   (4799 perm/sec)   p_kst 6.023333e-02   p_cons 7.334333e-01   p_joint 1.528333e-01

Outputting figure to mutsig2_images.part000000000133/PLEKHG3.4_3548_30000_0.060233_0.73343_0.15283.png
                gene_name: PLEKHG3
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.060 
        ci_ks_bounds_left: 0.058 
       ci_ks_bounds_right: 0.063 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 37 percent done.
PLEKHM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.947729e-02	ci left: 4.865527e-01	ci right 5.062494e-01	k: 4964	n:10000
Cons ci ratio: 6.592598e-02	ci left: 2.525117e-01	ci right 2.698276e-01	k: 2611	n:10000
KS ci ratio: 3.051038e-02	ci left: 6.131152e-01	ci right 6.322133e-01	k: 6227	n:10000
PLEKHM3   10000 perm   2 sec   (5964 perm/sec)   p_kst 6.227000e-01   p_cons 2.611000e-01   p_joint 4.964000e-01

Outputting figure to mutsig2_images.part000000000133/PLEKHM3.4_2314_10000_0.6227_0.2611_0.4964.png
                gene_name: PLEKHM3
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 38 percent done.
PLK1S1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.477206e-02	ci left: 7.056371e-01	ci right 7.234378e-01	k: 7146	n:10000
Cons ci ratio: 2.231802e-02	ci left: 7.466492e-01	ci right 7.636020e-01	k: 7552	n:10000
KS ci ratio: 3.563252e-02	ci left: 5.376819e-01	ci right 5.572905e-01	k: 5475	n:10000
PLK1S1   10000 perm   2 sec   (6055 perm/sec)   p_kst 5.475000e-01   p_cons 7.552000e-01   p_joint 7.146000e-01

Outputting figure to mutsig2_images.part000000000133/PLK1S1.4_2073_10000_0.5475_0.7552_0.7146.png
                gene_name: PLK1S1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.72 

Current progress: 40 percent done.
PLOD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.461939e-02	ci left: 2.602281e-01	ci right 2.777067e-01	k: 2689	n:10000
Cons ci ratio: 1.500300e-01	ci left: 5.908749e-02	ci right 6.876845e-02	k: 638	n:10000
KS ci ratio: 5.191724e-02	ci left: 3.535663e-01	ci right 3.725136e-01	k: 3630	n:10000
PLOD1   10000 perm   2 sec   (5997 perm/sec)   p_kst 3.630000e-01   p_cons 6.380000e-02   p_joint 2.689000e-01

Joint ci ratio: 6.249033e-02	ci left: 1.592380e-01	ci right 1.695598e-01	k: 3287	n:20000
Cons ci ratio: 1.036418e-01	ci left: 6.328032e-02	ci right 7.024628e-02	k: 1334	n:20000
KS ci ratio: 3.653300e-02	ci left: 3.586217e-01	ci right 3.720175e-01	k: 7306	n:20000
PLOD1   20000 perm   4 sec   (5178 perm/sec)   p_kst 3.653000e-01   p_cons 6.670000e-02   p_joint 1.643500e-01

Joint ci ratio: 5.453933e-02	ci left: 1.428788e-01	ci right 1.509230e-01	k: 4406	n:30000
Cons ci ratio: 8.652594e-02	ci left: 6.125606e-02	ci right 6.682873e-02	k: 1920	n:30000
KS ci ratio: 2.932639e-02	ci left: 3.677561e-01	ci right 3.787351e-01	k: 11197	n:30000
PLOD1   30000 perm   6 sec   (4923 perm/sec)   p_kst 3.732333e-01   p_cons 6.400000e-02   p_joint 1.468667e-01

Outputting figure to mutsig2_images.part000000000133/PLOD1.4_2260_30000_0.37323_0.064_0.14687.png
                gene_name: PLOD1
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.064 
      ci_cons_bounds_left: 0.061 
     ci_cons_bounds_right: 0.067 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 42 percent done.
PLSCR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.935644e-02	ci left: 2.336317e-01	ci right 2.505188e-01	k: 2420	n:10000
Cons ci ratio: 1.325683e-01	ci left: 7.504646e-02	ci right 8.579947e-02	k: 803	n:10000
KS ci ratio: 3.477092e-02	ci left: 5.498039e-01	ci right 5.693614e-01	k: 5596	n:10000
PLSCR2   10000 perm   1 sec   (7113 perm/sec)   p_kst 5.596000e-01   p_cons 8.030000e-02   p_joint 2.420000e-01

Joint ci ratio: 4.963128e-02	ci left: 2.318140e-01	ci right 2.436623e-01	k: 4754	n:20000
Cons ci ratio: 9.409227e-02	ci left: 7.608071e-02	ci right 8.364197e-02	k: 1596	n:20000
KS ci ratio: 2.480351e-02	ci left: 5.483804e-01	ci right 5.622035e-01	k: 11106	n:20000
PLSCR2   20000 perm   3 sec   (6276 perm/sec)   p_kst 5.553000e-01   p_cons 7.980000e-02   p_joint 2.377000e-01

Outputting figure to mutsig2_images.part000000000133/PLSCR2.4_699_20000_0.5553_0.0798_0.2377.png
                gene_name: PLSCR2
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.080 
      ci_cons_bounds_left: 0.076 
     ci_cons_bounds_right: 0.084 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 43 percent done.
PLUNC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.129120e-02	ci left: 7.638510e-01	ci right 7.803902e-01	k: 7722	n:10000
Cons ci ratio: 5.152669e-02	ci left: 3.570460e-01	ci right 3.760318e-01	k: 3665	n:10000
KS ci ratio: 2.777056e-02	ci left: 6.564574e-01	ci right 6.750460e-01	k: 6658	n:10000
PLUNC   10000 perm   2 sec   (6469 perm/sec)   p_kst 6.658000e-01   p_cons 3.665000e-01   p_joint 7.722000e-01

Outputting figure to mutsig2_images.part000000000133/PLUNC.4_799_10000_0.6658_0.3665_0.7722.png
                gene_name: PLUNC
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 45 percent done.
PLXNB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.962739e-02	ci left: 6.268832e-01	ci right 6.458373e-01	k: 6364	n:10000
Cons ci ratio: 8.519871e-02	ci left: 1.672051e-01	ci right 1.821849e-01	k: 1746	n:10000
KS ci ratio: 1.771708e-02	ci left: 8.228987e-01	ci right 8.377084e-01	k: 8304	n:10000
PLXNB2   10000 perm   2 sec   (4690 perm/sec)   p_kst 8.304000e-01   p_cons 1.746000e-01   p_joint 6.364000e-01

Outputting figure to mutsig2_images.part000000000133/PLXNB2.4_5657_10000_0.8304_0.1746_0.6364.png
                gene_name: PLXNB2
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 47 percent done.
PLXNB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.293342e-02	ci left: 7.363367e-01	ci right 7.535204e-01	k: 7450	n:10000
Cons ci ratio: 5.166009e-02	ci left: 3.558529e-01	ci right 3.748256e-01	k: 3653	n:10000
KS ci ratio: 3.710988e-02	ci left: 5.174580e-01	ci right 5.371261e-01	k: 5273	n:10000
PLXNB3   10000 perm   2 sec   (4827 perm/sec)   p_kst 5.273000e-01   p_cons 3.653000e-01   p_joint 7.450000e-01

Outputting figure to mutsig2_images.part000000000133/PLXNB3.4_5988_10000_0.5273_0.3653_0.745.png
                gene_name: PLXNB3
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.75 

Current progress: 48 percent done.
PM20D1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.599475e-02	ci left: 3.195935e-01	ci right 3.381063e-01	k: 3288	n:10000
Cons ci ratio: 2.266192e-02	ci left: 7.408856e-01	ci right 7.579689e-01	k: 7495	n:10000
KS ci ratio: 1.224140e-01	ci left: 8.727953e-02	ci right 9.875882e-02	k: 929	n:10000
PM20D1   10000 perm   2 sec   (6170 perm/sec)   p_kst 9.290000e-02   p_cons 7.495000e-01   p_joint 3.288000e-01

Joint ci ratio: 6.247896e-02	ci left: 1.592874e-01	ci right 1.696104e-01	k: 3288	n:20000
Cons ci ratio: 1.566395e-02	ci left: 7.519516e-01	ci right 7.638733e-01	k: 15159	n:20000
KS ci ratio: 8.731397e-02	ci left: 8.753876e-02	ci right 9.558044e-02	k: 1830	n:20000
PM20D1   20000 perm   4 sec   (5654 perm/sec)   p_kst 9.150000e-02   p_cons 7.579500e-01   p_joint 1.644000e-01

Outputting figure to mutsig2_images.part000000000133/PM20D1.4_1561_20000_0.0915_0.75795_0.1644.png
                gene_name: PM20D1
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.091 
        ci_ks_bounds_left: 0.088 
       ci_ks_bounds_right: 0.096 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 50 percent done.
PNLIPRP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.529198e-02	ci left: 3.251526e-01	ci right 3.437439e-01	k: 3344	n:10000
Cons ci ratio: 9.148904e-02	ci left: 1.479580e-01	ci right 1.622435e-01	k: 1550	n:10000
KS ci ratio: 3.489098e-02	ci left: 5.481004e-01	ci right 5.676658e-01	k: 5579	n:10000
PNLIPRP2   10000 perm   2 sec   (5310 perm/sec)   p_kst 5.579000e-01   p_cons 1.550000e-01   p_joint 3.344000e-01

Outputting figure to mutsig2_images.part000000000133/PNLIPRP2.4_1464_10000_0.5579_0.155_0.3344.png
                gene_name: PNLIPRP2
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 52 percent done.
PLEKHG4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.982611e-02	ci left: 6.237671e-01	ci right 6.427552e-01	k: 6333	n:10000
Cons ci ratio: 1.516236e-02	ci left: 8.631486e-01	ci right 8.764352e-01	k: 8699	n:10000
KS ci ratio: 4.807086e-02	ci left: 3.896815e-01	ci right 4.089772e-01	k: 3993	n:10000
PLEKHG4   10000 perm   2 sec   (5659 perm/sec)   p_kst 3.993000e-01   p_cons 8.699000e-01   p_joint 6.333000e-01

Outputting figure to mutsig2_images.part000000000133/PLEKHG4.3_3660_10000_0.3993_0.8699_0.6333.png
                gene_name: PLEKHG4
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 53 percent done.
PLEKHH3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.627716e-02	ci left: 5.287694e-01	ci right 5.484081e-01	k: 5386	n:10000
Cons ci ratio: 6.506595e-02	ci left: 2.575566e-01	ci right 2.749797e-01	k: 2662	n:10000
KS ci ratio: 3.967515e-02	ci left: 4.840539e-01	ci right 5.037497e-01	k: 4939	n:10000
PLEKHH3   10000 perm   2 sec   (5335 perm/sec)   p_kst 4.939000e-01   p_cons 2.662000e-01   p_joint 5.386000e-01

Outputting figure to mutsig2_images.part000000000133/PLEKHH3.3_2434_10000_0.4939_0.2662_0.5386.png
                gene_name: PLEKHH3
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 55 percent done.
PLEKHO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.426490e-02	ci left: 3.334940e-01	ci right 3.521976e-01	k: 3428	n:10000
Cons ci ratio: 7.262343e-03	ci left: 9.632049e-01	ci right 9.703198e-01	k: 9669	n:10000
KS ci ratio: 9.603921e-02	ci left: 1.358995e-01	ci right 1.497093e-01	k: 1427	n:10000
PLEKHO1   10000 perm   1 sec   (6748 perm/sec)   p_kst 1.427000e-01   p_cons 9.669000e-01   p_joint 3.428000e-01

Outputting figure to mutsig2_images.part000000000133/PLEKHO1.3_1254_10000_0.1427_0.9669_0.3428.png
                gene_name: PLEKHO1
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 57 percent done.
PLK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.400872e-02	ci left: 8.804271e-01	ci right 8.929466e-01	k: 8868	n:10000
Cons ci ratio: 3.317620e-02	ci left: 5.728619e-01	ci right 5.922899e-01	k: 5826	n:10000
KS ci ratio: 2.867409e-02	ci left: 6.419672e-01	ci right 6.607446e-01	k: 6514	n:10000
PLK3   10000 perm   2 sec   (6350 perm/sec)   p_kst 6.514000e-01   p_cons 5.826000e-01   p_joint 8.868000e-01

Outputting figure to mutsig2_images.part000000000133/PLK3.3_2001_10000_0.6514_0.5826_0.8868.png
                gene_name: PLK3
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 58 percent done.
PLS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.152427e-01	ci left: 2.863733e-02	ci right 3.563870e-02	k: 320	n:10000
Cons ci ratio: 1.361933e-01	ci left: 7.126753e-02	ci right 8.178074e-02	k: 764	n:10000
KS ci ratio: 2.086194e-01	ci left: 3.053425e-02	ci right 3.774046e-02	k: 340	n:10000
PLS1   10000 perm   2 sec   (6155 perm/sec)   p_kst 3.400000e-02   p_cons 7.640000e-02   p_joint 3.200000e-02

Joint ci ratio: 1.272464e-01	ci left: 4.241066e-02	ci right 4.822246e-02	k: 905	n:20000
Cons ci ratio: 9.549654e-02	ci left: 7.397763e-02	ci right 8.144569e-02	k: 1553	n:20000
KS ci ratio: 1.524487e-01	ci left: 2.955589e-02	ci right 3.448140e-02	k: 639	n:20000
PLS1   20000 perm   4 sec   (5593 perm/sec)   p_kst 3.195000e-02   p_cons 7.765000e-02   p_joint 4.525000e-02

Joint ci ratio: 1.242743e-01	ci left: 3.010182e-02	ci right 3.412279e-02	k: 962	n:30000
Cons ci ratio: 7.752330e-02	ci left: 7.548078e-02	ci right 8.160114e-02	k: 2355	n:30000
KS ci ratio: 1.237443e-01	ci left: 3.036047e-02	ci right 3.439743e-02	k: 970	n:30000
PLS1   30000 perm   6 sec   (5440 perm/sec)   p_kst 3.233333e-02   p_cons 7.850000e-02   p_joint 3.206667e-02

Joint ci ratio: 1.537051e-01	ci left: 1.476904e-02	ci right 1.725194e-02	k: 639	n:40000
Cons ci ratio: 6.718768e-02	ci left: 7.578398e-02	ci right 8.107741e-02	k: 3136	n:40000
KS ci ratio: 1.074523e-01	ci left: 3.046721e-02	ci right 3.395114e-02	k: 1287	n:40000
PLS1   40000 perm   8 sec   (5266 perm/sec)   p_kst 3.217500e-02   p_cons 7.840000e-02   p_joint 1.597500e-02

Joint ci ratio: 2.016654e-01	ci left: 6.743468e-03	ci right 8.274545e-03	k: 374	n:50000
Cons ci ratio: 6.064382e-02	ci left: 7.477647e-02	ci right 7.947276e-02	k: 3855	n:50000
KS ci ratio: 9.522592e-02	ci left: 3.121690e-02	ci right 3.435765e-02	k: 1638	n:50000
PLS1   50000 perm   10 sec   (5180 perm/sec)   p_kst 3.276000e-02   p_cons 7.710000e-02   p_joint 7.480000e-03

Joint ci ratio: 1.576451e-01	ci left: 9.395429e-03	ci right 1.101914e-02	k: 611	n:60000
Cons ci ratio: 5.514213e-02	ci left: 7.553722e-02	ci right 7.983707e-02	k: 4660	n:60000
KS ci ratio: 8.823150e-02	ci left: 3.044296e-02	ci right 3.326922e-02	k: 1910	n:60000
PLS1   60000 perm   12 sec   (5066 perm/sec)   p_kst 3.183333e-02   p_cons 7.766667e-02   p_joint 1.018333e-02

Joint ci ratio: 7.299210e-02	ci left: 3.812518e-02	ci right 4.102743e-02	k: 2769	n:70000
Cons ci ratio: 4.783759e-02	ci left: 8.543087e-02	ci right 8.963196e-02	k: 6126	n:70000
KS ci ratio: 8.158271e-02	ci left: 3.062446e-02	ci right 3.324310e-02	k: 2234	n:70000
PLS1   70000 perm   14 sec   (4965 perm/sec)   p_kst 3.191429e-02   p_cons 8.751429e-02   p_joint 3.955714e-02

Outputting figure to mutsig2_images.part000000000133/PLS1.3_1950_70000_0.031914_0.087514_0.039557.png
                gene_name: PLS1
               theta_stop: 0.082 
                    nperm: 70000 
                     p_ks: 0.032 
        ci_ks_bounds_left: 0.031 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.088 
      ci_cons_bounds_left: 0.085 
     ci_cons_bounds_right: 0.090 
                  p_joint: 0.040 
     ci_joint_bounds_left: 0.038 
    ci_joint_bounds_right: 0.041 

Current progress: 60 percent done.
PLS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.876921e-02	ci left: 3.828123e-01	ci right 4.020504e-01	k: 3924	n:10000
Cons ci ratio: 1.123610e-01	ci left: 1.023714e-01	ci right 1.146577e-01	k: 1084	n:10000
KS ci ratio: 6.010744e-02	ci left: 2.893427e-01	ci right 3.073749e-01	k: 2983	n:10000
PLS3   10000 perm   2 sec   (6633 perm/sec)   p_kst 2.983000e-01   p_cons 1.084000e-01   p_joint 3.924000e-01

Joint ci ratio: 3.549639e-02	ci left: 3.720203e-01	ci right 3.855149e-01	k: 7575	n:20000
Cons ci ratio: 7.840294e-02	ci left: 1.067273e-01	ci right 1.154861e-01	k: 2221	n:20000
KS ci ratio: 4.315085e-02	ci left: 2.857538e-01	ci right 2.984067e-01	k: 5841	n:20000
PLS3   20000 perm   3 sec   (5918 perm/sec)   p_kst 2.920500e-01   p_cons 1.110500e-01   p_joint 3.787500e-01

Outputting figure to mutsig2_images.part000000000133/PLS3.3_1953_20000_0.29205_0.11105_0.37875.png
                gene_name: PLS3
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 62 percent done.
PLSCR5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.571839e-01	ci left: 9.776646e-03	ci right 1.411465e-02	k: 118	n:10000
Cons ci ratio: 6.109146e-01	ci left: 2.859150e-03	ci right 5.442922e-03	k: 40	n:10000
KS ci ratio: 5.107490e-02	ci left: 3.611229e-01	ci right 3.801525e-01	k: 3706	n:10000
PLSCR5   10000 perm   2 sec   (6410 perm/sec)   p_kst 3.706000e-01   p_cons 4.000000e-03   p_joint 1.180000e-02

Joint ci ratio: 1.449005e-01	ci left: 3.273699e-02	ci right 3.789925e-02	k: 705	n:20000
Cons ci ratio: 3.710268e-01	ci left: 4.522436e-03	ci right 6.625242e-03	k: 110	n:20000
KS ci ratio: 3.593020e-02	ci left: 3.663414e-01	ci right 3.797955e-01	k: 7461	n:20000
PLSCR5   20000 perm   3 sec   (5900 perm/sec)   p_kst 3.730500e-01   p_cons 5.500000e-03   p_joint 3.525000e-02

Joint ci ratio: 1.694124e-01	ci left: 1.604641e-02	ci right 1.904807e-02	k: 525	n:30000
Cons ci ratio: 3.110310e-01	ci left: 4.448416e-03	ci right 6.116268e-03	k: 157	n:30000
KS ci ratio: 2.917654e-02	ci left: 3.701488e-01	ci right 3.811419e-01	k: 11269	n:30000
PLSCR5   30000 perm   5 sec   (5662 perm/sec)   p_kst 3.756333e-01   p_cons 5.233333e-03   p_joint 1.750000e-02

Joint ci ratio: 1.278133e-01	ci left: 2.150474e-02	ci right 2.446507e-02	k: 918	n:40000
Cons ci ratio: 2.764886e-01	ci left: 4.309143e-03	ci right 5.714198e-03	k: 199	n:40000
KS ci ratio: 2.533597e-02	ci left: 3.696290e-01	ci right 3.791392e-01	k: 14975	n:40000
PLSCR5   40000 perm   7 sec   (5501 perm/sec)   p_kst 3.743750e-01   p_cons 4.975000e-03   p_joint 2.295000e-02

Joint ci ratio: 1.118890e-01	ci left: 2.261782e-02	ci right 2.531784e-02	k: 1197	n:50000
Cons ci ratio: 2.463113e-01	ci left: 4.419408e-03	ci right 5.679111e-03	k: 251	n:50000
KS ci ratio: 2.275142e-02	ci left: 3.682797e-01	ci right 3.767751e-01	k: 18626	n:50000
PLSCR5   50000 perm   9 sec   (5372 perm/sec)   p_kst 3.725200e-01   p_cons 5.020000e-03   p_joint 2.394000e-02

Joint ci ratio: 7.303169e-02	ci left: 4.414094e-02	ci right 4.750316e-02	k: 2748	n:60000
Cons ci ratio: 2.261320e-01	ci left: 4.419886e-03	ci right 5.562136e-03	k: 298	n:60000
KS ci ratio: 2.083173e-02	ci left: 3.672491e-01	ci right 3.749967e-01	k: 22267	n:60000
PLSCR5   60000 perm   11 sec   (5248 perm/sec)   p_kst 3.711167e-01   p_cons 4.966667e-03   p_joint 4.580000e-02

Joint ci ratio: 7.583045e-02	ci left: 3.537531e-02	ci right 3.817754e-02	k: 2573	n:70000
Cons ci ratio: 2.090068e-01	ci left: 4.477410e-03	ci right 5.535691e-03	k: 349	n:70000
KS ci ratio: 1.933335e-02	ci left: 3.664075e-01	ci right 3.735748e-01	k: 25899	n:70000
PLSCR5   70000 perm   14 sec   (5135 perm/sec)   p_kst 3.699857e-01   p_cons 4.985714e-03   p_joint 3.675714e-02

Joint ci ratio: 7.984161e-02	ci left: 2.808092e-02	ci right 3.042838e-02	k: 2339	n:80000
Cons ci ratio: 1.938111e-01	ci left: 4.594371e-03	ci right 5.592039e-03	k: 406	n:80000
KS ci ratio: 1.804547e-02	ci left: 3.676510e-01	ci right 3.743583e-01	k: 29680	n:80000
PLSCR5   80000 perm   16 sec   (5043 perm/sec)   p_kst 3.710000e-01   p_cons 5.075000e-03   p_joint 2.923750e-02

Joint ci ratio: 7.653499e-02	ci left: 2.723718e-02	ci right 2.941559e-02	k: 2548	n:90000
Cons ci ratio: 1.870622e-01	ci left: 4.401287e-03	ci right 5.319963e-03	k: 436	n:90000
KS ci ratio: 1.702361e-02	ci left: 3.675653e-01	ci right 3.738874e-01	k: 33365	n:90000
PLSCR5   90000 perm   18 sec   (4928 perm/sec)   p_kst 3.707222e-01   p_cons 4.844444e-03   p_joint 2.831111e-02

Joint ci ratio: 8.047010e-02	ci left: 2.224641e-02	ci right 2.412139e-02	k: 2317	n:100000
Cons ci ratio: 1.781194e-01	ci left: 4.390597e-03	ci right 5.258508e-03	k: 481	n:100000
KS ci ratio: 1.614702e-02	ci left: 3.678150e-01	ci right 3.738125e-01	k: 37081	n:100000
PLSCR5   100000 perm   21 sec   (4845 perm/sec)   p_kst 3.708100e-01   p_cons 4.810000e-03   p_joint 2.317000e-02

Joint ci ratio: 7.711003e-02	ci left: 2.206867e-02	ci right 2.384751e-02	k: 2524	n:110000
Cons ci ratio: 1.693814e-01	ci left: 4.434943e-03	ci right 5.264223e-03	k: 532	n:110000
KS ci ratio: 1.539444e-02	ci left: 3.679899e-01	ci right 3.737079e-01	k: 40793	n:110000
PLSCR5   110000 perm   23 sec   (4765 perm/sec)   p_kst 3.708455e-01   p_cons 4.836364e-03   p_joint 2.294545e-02

Joint ci ratio: 7.931336e-02	ci left: 1.915814e-02	ci right 2.074851e-02	k: 2393	n:120000
Cons ci ratio: 1.643802e-01	ci left: 4.328860e-03	ci right 5.112038e-03	k: 565	n:120000
KS ci ratio: 1.473683e-02	ci left: 3.681826e-01	ci right 3.736570e-01	k: 44510	n:120000
PLSCR5   120000 perm   26 sec   (4675 perm/sec)   p_kst 3.709167e-01   p_cons 4.708333e-03   p_joint 1.994167e-02

Joint ci ratio: 7.172325e-02	ci left: 2.165530e-02	ci right 2.327379e-02	k: 2919	n:130000
Cons ci ratio: 1.564220e-01	ci left: 4.431526e-03	ci right 5.190822e-03	k: 624	n:130000
KS ci ratio: 1.416925e-02	ci left: 3.679430e-01	ci right 3.732013e-01	k: 48174	n:130000
PLSCR5   130000 perm   28 sec   (4593 perm/sec)   p_kst 3.705692e-01   p_cons 4.800000e-03   p_joint 2.245385e-02

Joint ci ratio: 6.445090e-02	ci left: 2.491253e-02	ci right 2.657862e-02	k: 3603	n:140000
Cons ci ratio: 1.511929e-01	ci left: 4.417177e-03	ci right 5.146424e-03	k: 668	n:140000
KS ci ratio: 1.365817e-02	ci left: 3.678909e-01	ci right 3.729573e-01	k: 51859	n:140000
PLSCR5   140000 perm   31 sec   (4517 perm/sec)   p_kst 3.704214e-01   p_cons 4.771429e-03   p_joint 2.573571e-02

Joint ci ratio: 4.539057e-02	ci left: 4.629051e-02	ci right 4.844703e-02	k: 7104	n:150000
Cons ci ratio: 1.468699e-01	ci left: 4.379415e-03	ci right 5.079940e-03	k: 708	n:150000
KS ci ratio: 1.319378e-02	ci left: 3.680219e-01	ci right 3.729164e-01	k: 55570	n:150000
PLSCR5   150000 perm   34 sec   (4448 perm/sec)   p_kst 3.704667e-01   p_cons 4.720000e-03   p_joint 4.736000e-02

Joint ci ratio: 4.365875e-02	ci left: 4.692053e-02	ci right 4.902089e-02	k: 7674	n:160000
Cons ci ratio: 1.419487e-01	ci left: 4.406917e-03	ci right 5.086221e-03	k: 758	n:160000
KS ci ratio: 1.279071e-02	ci left: 3.675212e-01	ci right 3.722585e-01	k: 59182	n:160000
PLSCR5   160000 perm   37 sec   (4366 perm/sec)   p_kst 3.698875e-01   p_cons 4.737500e-03   p_joint 4.796250e-02

Joint ci ratio: 4.256586e-02	ci left: 4.650531e-02	ci right 4.853369e-02	k: 8077	n:170000
Cons ci ratio: 1.380063e-01	ci left: 4.397445e-03	ci right 5.054915e-03	k: 802	n:170000
KS ci ratio: 1.242024e-02	ci left: 3.671638e-01	ci right 3.717583e-01	k: 62808	n:170000
PLSCR5   170000 perm   40 sec   (4291 perm/sec)   p_kst 3.694588e-01   p_cons 4.717647e-03   p_joint 4.751176e-02

Joint ci ratio: 4.188901e-02	ci left: 4.542178e-02	ci right 4.737064e-02	k: 8350	n:180000
Cons ci ratio: 1.338207e-01	ci left: 4.426847e-03	ci right 5.067042e-03	k: 853	n:180000
KS ci ratio: 1.206579e-02	ci left: 3.674027e-01	ci right 3.718681e-01	k: 66534	n:180000
PLSCR5   180000 perm   43 sec   (4220 perm/sec)   p_kst 3.696333e-01   p_cons 4.738889e-03   p_joint 4.638889e-02

Joint ci ratio: 4.584246e-02	ci left: 3.620773e-02	ci right 3.791170e-02	k: 7040	n:190000
Cons ci ratio: 1.306485e-01	ci left: 4.407592e-03	ci right 5.028720e-03	k: 895	n:190000
KS ci ratio: 1.174788e-02	ci left: 3.673080e-01	ci right 3.716538e-01	k: 70201	n:190000
PLSCR5   190000 perm   46 sec   (4133 perm/sec)   p_kst 3.694789e-01   p_cons 4.710526e-03   p_joint 3.705263e-02

Joint ci ratio: 5.173964e-02	ci left: 2.717765e-02	ci right 2.862607e-02	k: 5579	n:200000
Cons ci ratio: 1.275552e-01	ci left: 4.400106e-03	ci right 5.004387e-03	k: 939	n:200000
KS ci ratio: 1.144855e-02	ci left: 3.674390e-01	ci right 3.716748e-01	k: 73911	n:200000
PLSCR5   200000 perm   49 sec   (4076 perm/sec)   p_kst 3.695550e-01   p_cons 4.695000e-03   p_joint 2.789500e-02

Joint ci ratio: 5.110617e-02	ci left: 2.655546e-02	ci right 2.795287e-02	k: 5722	n:210000
Cons ci ratio: 1.242915e-01	ci left: 4.421176e-03	ci right 5.011671e-03	k: 989	n:210000
KS ci ratio: 1.117089e-02	ci left: 3.675635e-01	ci right 3.716973e-01	k: 77622	n:210000
PLSCR5   210000 perm   52 sec   (4018 perm/sec)   p_kst 3.696286e-01   p_cons 4.709524e-03   p_joint 2.724762e-02

Joint ci ratio: 5.262567e-02	ci left: 2.395222e-02	ci right 2.525125e-02	k: 5411	n:220000
Cons ci ratio: 1.216782e-01	ci left: 4.409653e-03	ci right 4.985334e-03	k: 1032	n:220000
KS ci ratio: 1.091579e-02	ci left: 3.675370e-01	ci right 3.715755e-01	k: 81302	n:220000
PLSCR5   220000 perm   55 sec   (3965 perm/sec)   p_kst 3.695545e-01   p_cons 4.690909e-03   p_joint 2.459545e-02

Joint ci ratio: 5.095876e-02	ci left: 2.444305e-02	ci right 2.572548e-02	k: 5768	n:230000
Cons ci ratio: 1.191120e-01	ci left: 4.407689e-03	ci right 4.970123e-03	k: 1077	n:230000
KS ci ratio: 1.067611e-02	ci left: 3.675703e-01	ci right 3.715199e-01	k: 84995	n:230000
PLSCR5   230000 perm   59 sec   (3912 perm/sec)   p_kst 3.695435e-01   p_cons 4.682609e-03   p_joint 2.507826e-02

Joint ci ratio: 5.010320e-02	ci left: 2.424733e-02	ci right 2.549751e-02	k: 5968	n:240000
Cons ci ratio: 1.164415e-01	ci left: 4.426234e-03	ci right 4.977500e-03	k: 1127	n:240000
KS ci ratio: 1.045455e-02	ci left: 3.674686e-01	ci right 3.713346e-01	k: 88656	n:240000
PLSCR5   240000 perm   62 sec   (3861 perm/sec)   p_kst 3.694000e-01   p_cons 4.695833e-03   p_joint 2.486667e-02

Joint ci ratio: 5.142327e-02	ci left: 2.213153e-02	ci right 2.330357e-02	k: 5678	n:250000
Cons ci ratio: 1.139914e-01	ci left: 4.439537e-03	ci right 4.980044e-03	k: 1176	n:250000
KS ci ratio: 1.023919e-02	ci left: 3.676954e-01	ci right 3.714836e-01	k: 92397	n:250000
PLSCR5   250000 perm   66 sec   (3808 perm/sec)   p_kst 3.695880e-01   p_cons 4.704000e-03   p_joint 2.271200e-02

Joint ci ratio: 4.815448e-02	ci left: 2.425502e-02	ci right 2.545560e-02	k: 6461	n:260000
Cons ci ratio: 1.117356e-01	ci left: 4.448191e-03	ci right 4.978327e-03	k: 1224	n:260000
KS ci ratio: 1.004648e-02	ci left: 3.674483e-01	ci right 3.711623e-01	k: 96019	n:260000
PLSCR5   260000 perm   69 sec   (3760 perm/sec)   p_kst 3.693038e-01   p_cons 4.707692e-03   p_joint 2.485000e-02

Joint ci ratio: 4.967852e-02	ci left: 2.198047e-02	ci right 2.310388e-02	k: 6085	n:270000
Cons ci ratio: 1.095222e-01	ci left: 4.463506e-03	ci right 4.984250e-03	k: 1274	n:270000
KS ci ratio: 9.848429e-03	ci left: 3.679675e-01	ci right 3.716130e-01	k: 99843	n:270000
PLSCR5   270000 perm   73 sec   (3711 perm/sec)   p_kst 3.697889e-01   p_cons 4.718519e-03   p_joint 2.253704e-02

Joint ci ratio: 4.043780e-02	ci left: 3.181442e-02	ci right 3.313099e-02	k: 9091	n:280000
Cons ci ratio: 1.073540e-01	ci left: 4.484775e-03	ci right 4.996988e-03	k: 1326	n:280000
KS ci ratio: 9.675779e-03	ci left: 3.677689e-01	ci right 3.713481e-01	k: 103476	n:280000
PLSCR5   280000 perm   76 sec   (3663 perm/sec)   p_kst 3.695571e-01   p_cons 4.735714e-03   p_joint 3.246786e-02

Joint ci ratio: 3.934897e-02	ci left: 3.243817e-02	ci right 3.374359e-02	k: 9595	n:290000
Cons ci ratio: 1.056566e-01	ci left: 4.474452e-03	ci right 4.976904e-03	k: 1369	n:290000
KS ci ratio: 9.511123e-03	ci left: 3.676223e-01	ci right 3.711389e-01	k: 107120	n:290000
PLSCR5   290000 perm   80 sec   (3616 perm/sec)   p_kst 3.693793e-01   p_cons 4.720690e-03   p_joint 3.308621e-02

Joint ci ratio: 3.877432e-02	ci left: 3.230748e-02	ci right 3.358823e-02	k: 9883	n:300000
Cons ci ratio: 1.044092e-01	ci left: 4.432409e-03	ci right 4.923901e-03	k: 1402	n:300000
KS ci ratio: 9.353123e-03	ci left: 3.675593e-01	ci right 3.710166e-01	k: 110786	n:300000
PLSCR5   300000 perm   84 sec   (3569 perm/sec)   p_kst 3.692867e-01   p_cons 4.673333e-03   p_joint 3.294333e-02

Joint ci ratio: 3.820083e-02	ci left: 3.222370e-02	ci right 3.348182e-02	k: 10183	n:310000
Cons ci ratio: 1.025965e-01	ci left: 4.446545e-03	ci right 4.930528e-03	k: 1452	n:310000
KS ci ratio: 9.200959e-03	ci left: 3.675910e-01	ci right 3.709920e-01	k: 114480	n:310000
PLSCR5   310000 perm   88 sec   (3524 perm/sec)   p_kst 3.692903e-01   p_cons 4.683871e-03   p_joint 3.284839e-02

Joint ci ratio: 3.759276e-02	ci left: 3.224439e-02	ci right 3.348284e-02	k: 10515	n:320000
Cons ci ratio: 1.007068e-01	ci left: 4.475099e-03	ci right 4.952689e-03	k: 1507	n:320000
KS ci ratio: 9.052223e-03	ci left: 3.678148e-01	ci right 3.711626e-01	k: 118236	n:320000
PLSCR5   320000 perm   92 sec   (3481 perm/sec)   p_kst 3.694875e-01   p_cons 4.709375e-03   p_joint 3.285938e-02

Joint ci ratio: 3.698465e-02	ci left: 3.231202e-02	ci right 3.353257e-02	k: 10863	n:330000
Cons ci ratio: 9.923740e-02	ci left: 4.472443e-03	ci right 4.942380e-03	k: 1552	n:330000
KS ci ratio: 8.918009e-03	ci left: 3.676318e-01	ci right 3.709280e-01	k: 121862	n:330000
PLSCR5   330000 perm   96 sec   (3435 perm/sec)   p_kst 3.692788e-01   p_cons 4.703030e-03   p_joint 3.291818e-02

Outputting figure to mutsig2_images.part000000000133/PLSCR5.3_844_330000_0.36928_0.004703_0.032918.png
                gene_name: PLSCR5
               theta_stop: 0.099 
                    nperm: 330000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.0047 
      ci_cons_bounds_left: 0.0045 
     ci_cons_bounds_right: 0.0049 
                  p_joint: 0.033 
     ci_joint_bounds_left: 0.032 
    ci_joint_bounds_right: 0.034 

Current progress: 63 percent done.
PLXNB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.724115e-02	ci left: 1.968288e-01	ci right 2.127436e-01	k: 2047	n:10000
Cons ci ratio: 2.102203e-01	ci left: 3.005970e-02	ci right 3.721534e-02	k: 335	n:10000
KS ci ratio: 4.868751e-02	ci left: 3.836086e-01	ci right 4.028536e-01	k: 3932	n:10000
PLXNB1   10000 perm   2 sec   (4968 perm/sec)   p_kst 3.932000e-01   p_cons 3.350000e-02   p_joint 2.047000e-01

Joint ci ratio: 8.848931e-02	ci left: 8.538264e-02	ci right 9.333722e-02	k: 1786	n:20000
Cons ci ratio: 1.539460e-01	ci left: 2.897822e-02	ci right 3.385926e-02	k: 627	n:20000
KS ci ratio: 3.447033e-02	ci left: 3.858731e-01	ci right 3.994581e-01	k: 7853	n:20000
PLXNB1   20000 perm   4 sec   (4648 perm/sec)   p_kst 3.926500e-01   p_cons 3.135000e-02   p_joint 8.930000e-02

Joint ci ratio: 7.872631e-02	ci left: 7.332036e-02	ci right 7.936199e-02	k: 2289	n:30000
Cons ci ratio: 1.261822e-01	ci left: 2.919686e-02	ci right 3.316128e-02	k: 934	n:30000
KS ci ratio: 2.821577e-02	ci left: 3.859377e-01	ci right 3.970167e-01	k: 11744	n:30000
PLXNB1   30000 perm   7 sec   (4471 perm/sec)   p_kst 3.914667e-01   p_cons 3.113333e-02   p_joint 7.630000e-02

Joint ci ratio: 6.382525e-02	ci left: 8.341792e-02	ci right 8.894232e-02	k: 3446	n:40000
Cons ci ratio: 1.108316e-01	ci left: 2.864186e-02	ci right 3.202677e-02	k: 1212	n:40000
KS ci ratio: 2.430909e-02	ci left: 3.891569e-01	ci right 3.987585e-01	k: 15758	n:40000
PLXNB1   40000 perm   9 sec   (4379 perm/sec)   p_kst 3.939500e-01   p_cons 3.030000e-02   p_joint 8.615000e-02

Joint ci ratio: 6.599040e-02	ci left: 6.374053e-02	ci right 6.811003e-02	k: 3295	n:50000
Cons ci ratio: 9.870388e-02	ci left: 2.906861e-02	ci right 3.210621e-02	k: 1528	n:50000
KS ci ratio: 2.182647e-02	ci left: 3.878370e-01	ci right 3.964155e-01	k: 19606	n:50000
PLXNB1   50000 perm   12 sec   (4298 perm/sec)   p_kst 3.921200e-01   p_cons 3.056000e-02   p_joint 6.590000e-02

Outputting figure to mutsig2_images.part000000000133/PLXNB1.3_6552_50000_0.39212_0.03056_0.0659.png
                gene_name: PLXNB1
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.031 
      ci_cons_bounds_left: 0.029 
     ci_cons_bounds_right: 0.032 
                  p_joint: 0.066 
     ci_joint_bounds_left: 0.064 
    ci_joint_bounds_right: 0.068 

Current progress: 65 percent done.
PMCH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.483886e-02	ci left: 7.045272e-01	ci right 7.223483e-01	k: 7135	n:10000
KS ci ratio: 2.368812e-02	ci left: 7.237072e-01	ci right 7.411572e-01	k: 7325	n:10000
PMCH   10000 perm   1 sec   (6793 perm/sec)   p_kst 7.325000e-01   p_cons 7.135000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000133/PMCH.3_510_10000_0.7325_0.7135_1.png
                gene_name: PMCH
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
PMPCB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.612609e-02	ci left: 1.641585e-01	ci right 1.790334e-01	k: 1715	n:10000
Cons ci ratio: 7.476885e-02	ci left: 2.074750e-01	ci right 2.236910e-01	k: 2155	n:10000
KS ci ratio: 8.612609e-02	ci left: 1.641585e-01	ci right 1.790334e-01	k: 1715	n:10000
PMPCB   10000 perm   1 sec   (6748 perm/sec)   p_kst 1.715000e-01   p_cons 2.155000e-01   p_joint 1.715000e-01

Outputting figure to mutsig2_images.part000000000133/PMPCB.3_1522_10000_0.1715_0.2155_0.1715.png
                gene_name: PMPCB
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.18 

Current progress: 68 percent done.
PNCK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.209987e-01	ci left: 2.712237e-02	ci right 3.395474e-02	k: 304	n:10000
Cons ci ratio: 1.317679e-01	ci left: 7.591905e-02	ci right 8.672633e-02	k: 812	n:10000
KS ci ratio: 3.861344e-01	ci left: 8.233934e-03	ci right 1.225906e-02	k: 101	n:10000
PNCK   10000 perm   1 sec   (7093 perm/sec)   p_kst 1.010000e-02   p_cons 8.120000e-02   p_joint 3.040000e-02

Joint ci ratio: 1.279880e-01	ci left: 4.192594e-02	ci right 4.770733e-02	k: 895	n:20000
Cons ci ratio: 9.526410e-02	ci left: 7.431994e-02	ci right 8.180328e-02	k: 1560	n:20000
KS ci ratio: 2.646529e-01	ci left: 9.413987e-03	ci right 1.233084e-02	k: 216	n:20000
PNCK   20000 perm   3 sec   (6310 perm/sec)   p_kst 1.080000e-02   p_cons 7.800000e-02   p_joint 4.475000e-02

Joint ci ratio: 1.681158e-01	ci left: 1.630199e-02	ci right 1.932576e-02	k: 533	n:30000
Cons ci ratio: 8.078814e-02	ci left: 6.981943e-02	ci right 7.573029e-02	k: 2182	n:30000
KS ci ratio: 2.183043e-01	ci left: 9.472069e-03	ci right 1.182415e-02	k: 318	n:30000
PNCK   30000 perm   5 sec   (5987 perm/sec)   p_kst 1.060000e-02   p_cons 7.273333e-02   p_joint 1.776667e-02

Joint ci ratio: 1.447673e-01	ci left: 1.669557e-02	ci right 1.932507e-02	k: 719	n:40000
Cons ci ratio: 7.002539e-02	ci left: 7.010034e-02	ci right 7.521191e-02	k: 2905	n:40000
KS ci ratio: 1.867057e-01	ci left: 9.881744e-03	ci right 1.194018e-02	k: 435	n:40000
PNCK   40000 perm   7 sec   (5804 perm/sec)   p_kst 1.087500e-02   p_cons 7.262500e-02   p_joint 1.797500e-02

Joint ci ratio: 1.029860e-01	ci left: 2.670792e-02	ci right 2.962721e-02	k: 1407	n:50000
Cons ci ratio: 6.012998e-02	ci left: 7.597954e-02	ci right 8.070956e-02	k: 3916	n:50000
KS ci ratio: 1.690453e-01	ci left: 9.740023e-03	ci right 1.155746e-02	k: 531	n:50000
PNCK   50000 perm   9 sec   (5673 perm/sec)   p_kst 1.062000e-02   p_cons 7.832000e-02   p_joint 2.814000e-02

Joint ci ratio: 1.116905e-01	ci left: 1.899197e-02	ci right 2.125478e-02	k: 1206	n:60000
Cons ci ratio: 5.485554e-02	ci left: 7.627774e-02	ci right 8.059647e-02	k: 4705	n:60000
KS ci ratio: 1.537579e-01	ci left: 9.892156e-03	ci right 1.155568e-02	k: 642	n:60000
PNCK   60000 perm   11 sec   (5536 perm/sec)   p_kst 1.070000e-02   p_cons 7.841667e-02   p_joint 2.010000e-02

Joint ci ratio: 1.094343e-01	ci left: 1.701408e-02	ci right 1.899759e-02	k: 1259	n:70000
Cons ci ratio: 5.076300e-02	ci left: 7.650381e-02	ci right 8.050264e-02	k: 5494	n:70000
KS ci ratio: 1.435335e-01	ci left: 9.785660e-03	ci right 1.131246e-02	k: 737	n:70000
PNCK   70000 perm   13 sec   (5437 perm/sec)   p_kst 1.052857e-02   p_cons 7.848571e-02   p_joint 1.798571e-02

Joint ci ratio: 1.038073e-01	ci left: 1.660265e-02	ci right 1.843258e-02	k: 1400	n:80000
Cons ci ratio: 4.739445e-02	ci left: 7.690496e-02	ci right 8.065065e-02	k: 6301	n:80000
KS ci ratio: 1.338972e-01	ci left: 9.889809e-03	ci right 1.132101e-02	k: 847	n:80000
PNCK   80000 perm   15 sec   (5296 perm/sec)   p_kst 1.058750e-02   p_cons 7.876250e-02   p_joint 1.750000e-02

Joint ci ratio: 1.063258e-01	ci left: 1.408613e-02	ci right 1.567869e-02	k: 1338	n:90000
Cons ci ratio: 4.458418e-02	ci left: 7.733375e-02	ci right 8.087121e-02	k: 7118	n:90000
KS ci ratio: 1.267102e-01	ci left: 9.855089e-03	ci right 1.119896e-02	k: 946	n:90000
PNCK   90000 perm   17 sec   (5197 perm/sec)   p_kst 1.051111e-02   p_cons 7.908889e-02   p_joint 1.486667e-02

Joint ci ratio: 1.033581e-01	ci left: 1.344657e-02	ci right 1.492180e-02	k: 1417	n:100000
Cons ci ratio: 4.210010e-02	ci left: 7.809795e-02	ci right 8.146647e-02	k: 7977	n:100000
KS ci ratio: 1.202208e-01	ci left: 9.887173e-03	ci right 1.116146e-02	k: 1051	n:100000
PNCK   100000 perm   20 sec   (5105 perm/sec)   p_kst 1.051000e-02   p_cons 7.977000e-02   p_joint 1.417000e-02

Joint ci ratio: 1.055578e-01	ci left: 1.172781e-02	ci right 1.304354e-02	k: 1361	n:110000
Cons ci ratio: 4.017024e-02	ci left: 7.807006e-02	ci right 8.127942e-02	k: 8763	n:110000
KS ci ratio: 1.141386e-01	ci left: 1.000320e-02	ci right 1.122281e-02	k: 1166	n:110000
PNCK   110000 perm   22 sec   (5017 perm/sec)   p_kst 1.060000e-02   p_cons 7.966364e-02   p_joint 1.237273e-02

Joint ci ratio: 1.065667e-01	ci left: 1.055546e-02	ci right 1.175168e-02	k: 1337	n:120000
Cons ci ratio: 3.846386e-02	ci left: 7.812412e-02	ci right 8.119623e-02	k: 9558	n:120000
KS ci ratio: 1.095010e-01	ci left: 9.987722e-03	ci right 1.115278e-02	k: 1267	n:120000
PNCK   120000 perm   24 sec   (4939 perm/sec)   p_kst 1.055833e-02   p_cons 7.965000e-02   p_joint 1.114167e-02

Joint ci ratio: 1.093285e-01	ci left: 9.256653e-03	ci right 1.033461e-02	k: 1272	n:130000
Cons ci ratio: 3.697348e-02	ci left: 7.811129e-02	ci right 8.106134e-02	k: 10345	n:130000
KS ci ratio: 1.051150e-01	ci left: 1.002792e-02	ci right 1.114792e-02	k: 1375	n:130000
PNCK   130000 perm   27 sec   (4852 perm/sec)   p_kst 1.057692e-02   p_cons 7.957692e-02   p_joint 9.784615e-03

Joint ci ratio: 7.953010e-02	ci left: 1.637832e-02	ci right 1.774179e-02	k: 2387	n:140000
Cons ci ratio: 3.681349e-02	ci left: 7.354055e-02	ci right 7.630566e-02	k: 10488	n:140000
KS ci ratio: 1.015634e-01	ci left: 9.993542e-03	ci right 1.106973e-02	k: 1473	n:140000
PNCK   140000 perm   29 sec   (4756 perm/sec)   p_kst 1.052143e-02   p_cons 7.491429e-02   p_joint 1.705000e-02

Joint ci ratio: 7.780700e-02	ci left: 1.599214e-02	ci right 1.729331e-02	k: 2495	n:150000
Cons ci ratio: 3.563935e-02	ci left: 7.330170e-02	ci right 7.596811e-02	k: 11194	n:150000
KS ci ratio: 9.766087e-02	ci left: 1.010741e-02	ci right 1.115164e-02	k: 1593	n:150000
PNCK   150000 perm   32 sec   (4678 perm/sec)   p_kst 1.062000e-02   p_cons 7.462667e-02   p_joint 1.663333e-02

Outputting figure to mutsig2_images.part000000000133/PNCK.3_1378_150000_0.01062_0.074627_0.016633.png
                gene_name: PNCK
               theta_stop: 0.098 
                    nperm: 150000 
                     p_ks: 0.011 
        ci_ks_bounds_left: 0.010 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.075 
      ci_cons_bounds_left: 0.073 
     ci_cons_bounds_right: 0.076 
                  p_joint: 0.017 
     ci_joint_bounds_left: 0.016 
    ci_joint_bounds_right: 0.017 

Current progress: 70 percent done.
PNLIPRP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.157396e-01	ci left: 9.691393e-02	ci right 1.089185e-01	k: 1028	n:10000
Cons ci ratio: 2.494214e-02	ci left: 7.028121e-01	ci right 7.206644e-01	k: 7118	n:10000
KS ci ratio: 2.135306e-01	ci left: 2.911124e-02	ci right 3.616447e-02	k: 325	n:10000
PNLIPRP1   10000 perm   1 sec   (7361 perm/sec)   p_kst 3.250000e-02   p_cons 7.118000e-01   p_joint 1.028000e-01

Joint ci ratio: 7.017748e-02	ci left: 1.301938e-01	ci right 1.397126e-01	k: 2698	n:20000
Cons ci ratio: 1.713527e-02	ci left: 7.172441e-01	ci right 7.296908e-01	k: 14470	n:20000
KS ci ratio: 1.489962e-01	ci left: 3.095285e-02	ci right 3.598398e-02	k: 668	n:20000
PNLIPRP1   20000 perm   3 sec   (6488 perm/sec)   p_kst 3.340000e-02   p_cons 7.235000e-01   p_joint 1.349000e-01

Joint ci ratio: 9.497382e-02	ci left: 5.117578e-02	ci right 5.631108e-02	k: 1611	n:30000
Cons ci ratio: 1.397933e-02	ci left: 7.187358e-01	ci right 7.288875e-01	k: 21715	n:30000
KS ci ratio: 1.242077e-01	ci left: 3.013415e-02	ci right 3.415712e-02	k: 963	n:30000
PNLIPRP1   30000 perm   5 sec   (6062 perm/sec)   p_kst 3.210000e-02   p_cons 7.238333e-01   p_joint 5.370000e-02

Joint ci ratio: 5.931150e-02	ci left: 9.552247e-02	ci right 1.013860e-01	k: 3937	n:40000
Cons ci ratio: 1.245479e-02	ci left: 7.078861e-01	ci right 7.167830e-01	k: 28494	n:40000
KS ci ratio: 1.062646e-01	ci left: 3.114908e-02	ci right 3.466916e-02	k: 1315	n:40000
PNLIPRP1   40000 perm   7 sec   (5877 perm/sec)   p_kst 3.287500e-02   p_cons 7.123500e-01   p_joint 9.842500e-02

Joint ci ratio: 4.150370e-02	ci left: 1.482487e-01	ci right 1.545518e-01	k: 7569	n:50000
Cons ci ratio: 1.108314e-02	ci left: 7.104585e-01	ci right 7.183965e-01	k: 35722	n:50000
KS ci ratio: 9.657435e-02	ci left: 3.035735e-02	ci right 3.345731e-02	k: 1594	n:50000
PNLIPRP1   50000 perm   9 sec   (5738 perm/sec)   p_kst 3.188000e-02   p_cons 7.144400e-01   p_joint 1.513800e-01

Outputting figure to mutsig2_images.part000000000133/PNLIPRP1.3_1452_50000_0.03188_0.71444_0.15138.png
                gene_name: PNLIPRP1
               theta_stop: 0.097 
                    nperm: 50000 
                     p_ks: 0.032 
        ci_ks_bounds_left: 0.030 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.15 

Current progress: 72 percent done.
PNMA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.679164e-02	ci left: 1.340383e-01	ci right 1.477716e-01	k: 1408	n:10000
Cons ci ratio: 4.853484e-02	ci left: 3.851018e-01	ci right 4.043596e-01	k: 3947	n:10000
KS ci ratio: 1.246431e-01	ci left: 8.436377e-02	ci right 9.567638e-02	k: 899	n:10000
PNMA2   10000 perm   2 sec   (5819 perm/sec)   p_kst 8.990000e-02   p_cons 3.947000e-01   p_joint 1.408000e-01

Joint ci ratio: 7.134306e-02	ci left: 1.264513e-01	ci right 1.358562e-01	k: 2622	n:20000
Cons ci ratio: 3.537602e-02	ci left: 3.736146e-01	ci right 3.871202e-01	k: 7607	n:20000
KS ci ratio: 8.620424e-02	ci left: 8.964657e-02	ci right 9.777200e-02	k: 1873	n:20000
PNMA2   20000 perm   4 sec   (5696 perm/sec)   p_kst 9.365000e-02   p_cons 3.803500e-01   p_joint 1.311000e-01

Outputting figure to mutsig2_images.part000000000133/PNMA2.3_1099_20000_0.09365_0.38035_0.1311.png
                gene_name: PNMA2
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.094 
        ci_ks_bounds_left: 0.090 
       ci_ks_bounds_right: 0.098 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 73 percent done.
PLG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.254102e-01	ci left: 8.339227e-02	ci right 9.464849e-02	k: 889	n:10000
Cons ci ratio: 2.096428e-02	ci left: 7.693191e-01	ci right 7.857189e-01	k: 7776	n:10000
KS ci ratio: 2.217497e-01	ci left: 2.693317e-02	ci right 3.374407e-02	k: 302	n:10000
PLG   10000 perm   2 sec   (6650 perm/sec)   p_kst 3.020000e-02   p_cons 7.776000e-01   p_joint 8.890000e-02

Joint ci ratio: 5.033986e-02	ci left: 2.267589e-01	ci right 2.385189e-01	k: 4652	n:20000
Cons ci ratio: 1.506795e-02	ci left: 7.660204e-01	ci right 7.777005e-01	k: 15438	n:20000
KS ci ratio: 1.568044e-01	ci left: 2.791979e-02	ci right 3.271805e-02	k: 605	n:20000
PLG   20000 perm   4 sec   (5700 perm/sec)   p_kst 3.025000e-02   p_cons 7.719000e-01   p_joint 2.326000e-01

Joint ci ratio: 3.465907e-02	ci left: 2.937229e-01	ci right 3.041161e-01	k: 8967	n:30000
Cons ci ratio: 1.232155e-02	ci left: 7.665717e-01	ci right 7.761090e-01	k: 23141	n:30000
KS ci ratio: 1.270970e-01	ci left: 2.877686e-02	ci right 3.271471e-02	k: 921	n:30000
PLG   30000 perm   5 sec   (5478 perm/sec)   p_kst 3.070000e-02   p_cons 7.713667e-01   p_joint 2.989000e-01

Joint ci ratio: 2.987896e-02	ci left: 2.963327e-01	ci right 3.053462e-01	k: 12033	n:40000
Cons ci ratio: 1.066069e-02	ci left: 7.675545e-01	ci right 7.758060e-01	k: 30868	n:40000
KS ci ratio: 1.088575e-01	ci left: 2.968819e-02	ci right 3.313028e-02	k: 1255	n:40000
PLG   40000 perm   8 sec   (5316 perm/sec)   p_kst 3.137500e-02   p_cons 7.717000e-01   p_joint 3.008250e-01

Joint ci ratio: 6.708996e-03	ci left: 8.693025e-01	ci right 8.751742e-01	k: 43613	n:50000
Cons ci ratio: 9.506521e-03	ci left: 7.690612e-01	ci right 7.764271e-01	k: 38638	n:50000
KS ci ratio: 9.726944e-02	ci left: 2.992769e-02	ci right 3.300703e-02	k: 1572	n:50000
PLG   50000 perm   10 sec   (5197 perm/sec)   p_kst 3.144000e-02   p_cons 7.727600e-01   p_joint 8.722600e-01

Outputting figure to mutsig2_images.part000000000133/PLG.2_2513_50000_0.03144_0.77276_0.87226.png
                gene_name: PLG
               theta_stop: 0.097 
                    nperm: 50000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.030 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 75 percent done.
PLIN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.090336e-01	ci left: 7.243098e-03	ci right 1.105110e-02	k: 90	n:10000
Cons ci ratio: 3.007806e-01	ci left: 1.418736e-02	ci right 1.929975e-02	k: 166	n:10000
KS ci ratio: 1.927855e-01	ci left: 3.586235e-02	ci right 4.360871e-02	k: 396	n:10000
PLIN1   10000 perm   1 sec   (7301 perm/sec)   p_kst 3.960000e-02   p_cons 1.660000e-02   p_joint 9.000000e-03

Joint ci ratio: 5.592997e-01	ci left: 1.770085e-03	ci right 3.180807e-03	k: 48	n:20000
Cons ci ratio: 2.107720e-01	ci left: 1.520650e-02	ci right 1.883587e-02	k: 339	n:20000
KS ci ratio: 1.343958e-01	ci left: 3.805187e-02	ci right 4.358264e-02	k: 815	n:20000
PLIN1   20000 perm   3 sec   (6454 perm/sec)   p_kst 4.075000e-02   p_cons 1.695000e-02   p_joint 2.400000e-03

Joint ci ratio: 4.748229e-01	ci left: 1.731209e-03	ci right 2.835399e-03	k: 67	n:30000
Cons ci ratio: 1.778596e-01	ci left: 1.451487e-02	ci right 1.737998e-02	k: 477	n:30000
KS ci ratio: 1.090398e-01	ci left: 3.904373e-02	ci right 4.357898e-02	k: 1238	n:30000
PLIN1   30000 perm   5 sec   (6118 perm/sec)   p_kst 4.126667e-02   p_cons 1.590000e-02   p_joint 2.233333e-03

Joint ci ratio: 4.552634e-01	ci left: 1.430773e-03	ci right 2.294124e-03	k: 73	n:40000
Cons ci ratio: 1.343144e-01	ci left: 1.944797e-02	ci right 2.227219e-02	k: 833	n:40000
KS ci ratio: 9.458102e-02	ci left: 3.922427e-02	ci right 4.314270e-02	k: 1646	n:40000
PLIN1   40000 perm   7 sec   (5906 perm/sec)   p_kst 4.115000e-02   p_cons 2.082500e-02   p_joint 1.825000e-03

Joint ci ratio: 3.839838e-01	ci left: 1.681740e-03	ci right 2.497801e-03	k: 103	n:50000
Cons ci ratio: 1.196957e-01	ci left: 1.974166e-02	ci right 2.227438e-02	k: 1049	n:50000
KS ci ratio: 8.424984e-02	ci left: 3.974890e-02	ci right 4.326458e-02	k: 2074	n:50000
PLIN1   50000 perm   9 sec   (5743 perm/sec)   p_kst 4.148000e-02   p_cons 2.098000e-02   p_joint 2.060000e-03

Joint ci ratio: 9.625197e-02	ci left: 2.560374e-02	ci right 2.820896e-02	k: 1613	n:60000
Cons ci ratio: 1.094890e-01	ci left: 1.977027e-02	ci right 2.207640e-02	k: 1254	n:60000
KS ci ratio: 7.668471e-02	ci left: 4.013070e-02	ci right 4.334715e-02	k: 2503	n:60000
PLIN1   60000 perm   11 sec   (5603 perm/sec)   p_kst 4.171667e-02   p_cons 2.090000e-02   p_joint 2.688333e-02

Joint ci ratio: 9.112108e-02	ci left: 2.458223e-02	ci right 2.694302e-02	k: 1802	n:70000
Cons ci ratio: 1.013731e-01	ci left: 1.985304e-02	ci right 2.198693e-02	k: 1463	n:70000
KS ci ratio: 7.077330e-02	ci left: 4.049782e-02	ci right 4.348315e-02	k: 2938	n:70000
PLIN1   70000 perm   13 sec   (5465 perm/sec)   p_kst 4.197143e-02   p_cons 2.090000e-02   p_joint 2.574286e-02

Joint ci ratio: 1.002941e-01	ci left: 1.779692e-02	ci right 1.968821e-02	k: 1498	n:80000
Cons ci ratio: 9.480118e-02	ci left: 1.993210e-02	ci right 2.192786e-02	k: 1673	n:80000
KS ci ratio: 6.611880e-02	ci left: 4.069421e-02	ci right 4.348913e-02	k: 3366	n:80000
PLIN1   80000 perm   15 sec   (5355 perm/sec)   p_kst 4.207500e-02   p_cons 2.091250e-02   p_joint 1.872500e-02

Joint ci ratio: 7.976546e-02	ci left: 2.508992e-02	ci right 2.718522e-02	k: 2351	n:90000
Cons ci ratio: 8.928871e-02	ci left: 2.002968e-02	ci right 2.191249e-02	k: 1886	n:90000
KS ci ratio: 6.216524e-02	ci left: 4.099426e-02	ci right 4.363535e-02	k: 3807	n:90000
PLIN1   90000 perm   17 sec   (5250 perm/sec)   p_kst 4.230000e-02   p_cons 2.095556e-02   p_joint 2.612222e-02

Outputting figure to mutsig2_images.part000000000133/PLIN1.2_1601_90000_0.0423_0.020956_0.026122.png
                gene_name: PLIN1
               theta_stop: 0.089 
                    nperm: 90000 
                     p_ks: 0.042 
        ci_ks_bounds_left: 0.041 
       ci_ks_bounds_right: 0.044 
                   p_cons: 0.021 
      ci_cons_bounds_left: 0.020 
     ci_cons_bounds_right: 0.022 
                  p_joint: 0.026 
     ci_joint_bounds_left: 0.025 
    ci_joint_bounds_right: 0.027 

Current progress: 77 percent done.
PLK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.267935e-02	ci left: 4.476992e-01	ci right 4.673255e-01	k: 4575	n:10000
KS ci ratio: 2.179890e-02	ci left: 7.553490e-01	ci right 7.720971e-01	k: 7638	n:10000
PLK1   10000 perm   2 sec   (6357 perm/sec)   p_kst 7.638000e-01   p_cons 4.575000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000133/PLK1.2_1852_10000_0.7638_0.4575_1.png
                gene_name: PLK1
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
PLP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.137588e-02	ci left: 7.624337e-01	ci right 7.790083e-01	k: 7708	n:10000
Cons ci ratio: 5.913147e-02	ci left: 2.961823e-01	ci right 3.143313e-01	k: 3052	n:10000
KS ci ratio: 5.264337e-02	ci left: 3.472048e-01	ci right 3.660788e-01	k: 3566	n:10000
PLP1   10000 perm   1 sec   (7177 perm/sec)   p_kst 3.566000e-01   p_cons 3.052000e-01   p_joint 7.708000e-01

Outputting figure to mutsig2_images.part000000000133/PLP1.2_862_10000_0.3566_0.3052_0.7708.png
                gene_name: PLP1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 80 percent done.
PLP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.798050e-02	ci left: 8.186283e-01	ci right 8.335812e-01	k: 8262	n:10000
Cons ci ratio: 7.873806e-03	ci left: 9.573329e-01	ci right 9.649955e-01	k: 9613	n:10000
KS ci ratio: 4.320754e-02	ci left: 4.416119e-01	ci right 4.612164e-01	k: 4514	n:10000
PLP2   10000 perm   1 sec   (7159 perm/sec)   p_kst 4.514000e-01   p_cons 9.613000e-01   p_joint 8.262000e-01

Outputting figure to mutsig2_images.part000000000133/PLP2.2_479_10000_0.4514_0.9613_0.8262.png
                gene_name: PLP2
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 82 percent done.
PLSCR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.965508e-03	ci left: 9.816675e-01	ci right 9.866446e-01	k: 9843	n:10000
Cons ci ratio: 3.410571e-02	ci left: 5.593253e-01	ci right 5.788345e-01	k: 5691	n:10000
KS ci ratio: 1.158783e-02	ci left: 9.142005e-01	ci right 9.249535e-01	k: 9197	n:10000
PLSCR1   10000 perm   1 sec   (7026 perm/sec)   p_kst 9.197000e-01   p_cons 5.691000e-01   p_joint 9.843000e-01

Outputting figure to mutsig2_images.part000000000133/PLSCR1.2_989_10000_0.9197_0.5691_0.9843.png
                gene_name: PLSCR1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 83 percent done.
PLSCR4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.115807e-02	ci left: 7.660785e-01	ci right 7.825614e-01	k: 7744	n:10000
Cons ci ratio: 4.262781e-02	ci left: 4.482980e-01	ci right 4.679264e-01	k: 4581	n:10000
KS ci ratio: 2.088549e-02	ci left: 7.706358e-01	ci right 7.870015e-01	k: 7789	n:10000
PLSCR4   10000 perm   1 sec   (7125 perm/sec)   p_kst 7.789000e-01   p_cons 4.581000e-01   p_joint 7.744000e-01

Outputting figure to mutsig2_images.part000000000133/PLSCR4.2_1022_10000_0.7789_0.4581_0.7744.png
                gene_name: PLSCR4
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 85 percent done.
PLTP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.745238e-02	ci left: 8.271707e-01	ci right 8.418339e-01	k: 8346	n:10000
KS ci ratio: 4.046880e-02	ci left: 4.741611e-01	ci right 4.938483e-01	k: 4840	n:10000
PLTP   10000 perm   2 sec   (5473 perm/sec)   p_kst 4.840000e-01   p_cons 8.346000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000133/PLTP.2_1542_10000_0.484_0.8346_1.png
                gene_name: PLTP
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
PLXNA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.279304e-02	ci left: 8.978526e-01	ci right 9.095111e-01	k: 9038	n:10000
Cons ci ratio: 3.995386e-02	ci left: 4.805560e-01	ci right 5.002496e-01	k: 4904	n:10000
KS ci ratio: 4.315524e-02	ci left: 4.422106e-01	ci right 4.618174e-01	k: 4520	n:10000
PLXNA2   10000 perm   2 sec   (5218 perm/sec)   p_kst 4.520000e-01   p_cons 4.904000e-01   p_joint 9.038000e-01

Outputting figure to mutsig2_images.part000000000133/PLXNA2.2_5809_10000_0.452_0.4904_0.9038.png
                gene_name: PLXNA2
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 88 percent done.
PMPCA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.357525e-03	ci left: 9.524213e-01	ci right 9.605100e-01	k: 9566	n:10000
Cons ci ratio: 5.322182e-02	ci left: 3.422361e-01	ci right 3.610504e-01	k: 3516	n:10000
KS ci ratio: 1.235153e-01	ci left: 8.582142e-02	ci right 9.721783e-02	k: 914	n:10000
PMPCA   10000 perm   1 sec   (6796 perm/sec)   p_kst 9.140000e-02   p_cons 3.516000e-01   p_joint 9.566000e-01

Joint ci ratio: 5.472764e-02	ci left: 1.985325e-01	ci right 2.097536e-01	k: 4082	n:20000
Cons ci ratio: 3.689016e-02	ci left: 3.541401e-01	ci right 3.675004e-01	k: 7216	n:20000
KS ci ratio: 8.723533e-02	ci left: 8.768580e-02	ci right 9.573336e-02	k: 1833	n:20000
PMPCA   20000 perm   3 sec   (6187 perm/sec)   p_kst 9.165000e-02   p_cons 3.608000e-01   p_joint 2.041000e-01

Outputting figure to mutsig2_images.part000000000133/PMPCA.2_1630_20000_0.09165_0.3608_0.2041.png
                gene_name: PMPCA
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.092 
        ci_ks_bounds_left: 0.088 
       ci_ks_bounds_right: 0.096 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 90 percent done.
PNLDC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.473563e-02	ci left: 7.062425e-01	ci right 7.240320e-01	k: 7152	n:10000
KS ci ratio: 6.262613e-02	ci left: 2.726011e-01	ci right 2.903264e-01	k: 2814	n:10000
PNLDC1   10000 perm   1 sec   (7175 perm/sec)   p_kst 2.814000e-01   p_cons 7.152000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000133/PNLDC1.2_1635_10000_0.2814_0.7152_1.png
                gene_name: PNLDC1
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
PNMA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.834058e-02	ci left: 1.303171e-01	ci right 1.438950e-01	k: 1370	n:10000
Cons ci ratio: 1.006938e-01	ci left: 1.249344e-01	ci right 1.382810e-01	k: 1315	n:10000
KS ci ratio: 4.974422e-02	ci left: 3.734575e-01	ci right 3.926107e-01	k: 3830	n:10000
PNMA3   10000 perm   1 sec   (6787 perm/sec)   p_kst 3.830000e-01   p_cons 1.315000e-01   p_joint 1.370000e-01

Joint ci ratio: 6.029774e-02	ci left: 1.691638e-01	ci right 1.797311e-01	k: 3488	n:20000
Cons ci ratio: 5.273765e-02	ci left: 2.107095e-01	ci right 2.221730e-01	k: 4328	n:20000
KS ci ratio: 3.487477e-02	ci left: 3.803413e-01	ci right 3.938916e-01	k: 7742	n:20000
PNMA3   20000 perm   3 sec   (6126 perm/sec)   p_kst 3.871000e-01   p_cons 2.164000e-01   p_joint 1.744000e-01

Outputting figure to mutsig2_images.part000000000133/PNMA3.2_1396_20000_0.3871_0.2164_0.1744.png
                gene_name: PNMA3
               theta_stop: 0.060 
                    nperm: 20000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 93 percent done.
PNMAL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.015439e-02	ci left: 6.186415e-01	ci right 6.376837e-01	k: 6282	n:10000
KS ci ratio: 1.215838e-02	ci left: 9.065853e-01	ci right 9.177733e-01	k: 9123	n:10000
PNMAL1   10000 perm   2 sec   (6560 perm/sec)   p_kst 9.123000e-01   p_cons 6.282000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000133/PNMAL1.2_1350_10000_0.9123_0.6282_1.png
                gene_name: PNMAL1
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
PNMAL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.526754e-03	ci left: 9.777025e-01	ci right 9.832126e-01	k: 9806	n:10000
Cons ci ratio: 3.003189e-02	ci left: 6.205509e-01	ci right 6.395732e-01	k: 6301	n:10000
KS ci ratio: 1.029893e-02	ci left: 9.305074e-01	ci right 9.402371e-01	k: 9355	n:10000
PNMAL2   10000 perm   1 sec   (6837 perm/sec)   p_kst 9.355000e-01   p_cons 6.301000e-01   p_joint 9.806000e-01

Outputting figure to mutsig2_images.part000000000133/PNMAL2.2_1912_10000_0.9355_0.6301_0.9806.png
                gene_name: PNMAL2
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 97 percent done.
PNMT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.368207e-02	ci left: 7.238082e-01	ci right 7.412561e-01	k: 7326	n:10000
KS ci ratio: 6.390347e-03	ci left: 9.709012e-01	ci right 9.772186e-01	k: 9742	n:10000
PNMT   10000 perm   1 sec   (7437 perm/sec)   p_kst 9.742000e-01   p_cons 7.326000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000133/PNMT.2_861_10000_0.9742_0.7326_1.png
                gene_name: PNMT
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
PNN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.777161e-02	ci left: 3.926687e-01	ci right 4.119882e-01	k: 4023	n:10000
Cons ci ratio: 5.378673e-02	ci left: 3.374673e-01	ci right 3.562220e-01	k: 3468	n:10000
KS ci ratio: 4.995533e-02	ci left: 3.714676e-01	ci right 3.906018e-01	k: 3810	n:10000
PNN   10000 perm   2 sec   (6460 perm/sec)   p_kst 3.810000e-01   p_cons 3.468000e-01   p_joint 4.023000e-01

Outputting figure to mutsig2_images.part000000000133/PNN.2_2190_10000_0.381_0.3468_0.4023.png
                gene_name: PNN
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000133
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 133 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1723>
Subject: Job 8004422: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1723>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000134> was used as the working directory.
Started at Sun Nov 11 15:13:17 2012
Results reported at Sun Nov 11 15:26:51 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000134.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000134.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 134  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000134.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    818.84 sec.
    Max Memory :      4749 MB
    Max Swap   :      7132 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
134
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 134
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 134: processing genes 12034 - 12123
Calculating significance of each gene.
Using projection method.
12034	PNP	1
12035	PNPLA1	5.798784e-01
12036	PNPLA2	1
12037	PNPLA3	7.954255e-01
12038	PNPLA4	6.180740e-01
12039	PNPLA5	1
12040	PNPLA6	1
12041	PNPLA7	8.994104e-01
12042	PNPLA8	4.255314e-01
12043	PNPO	1
12044	PNPT1	8.898658e-01
12045	PNRC1	3.934819e-01
12046	POC1A	1
12047	POC1B	5.942828e-01
12048	POC5	6.899005e-01
12049	PODN	1
12050	PODNL1	6.276231e-01
12051	PODXL	8.717878e-01
12052	PODXL2	1.336800e-02
12053	POF1B	5.780228e-01
12054	POFUT1	6.180671e-01
12055	POFUT2	8.108152e-01
12056	POGK	8.297129e-01
12057	POGZ	9.916132e-01
12058	POLA1	9.548648e-01
12059	POLA2	1
12060	POLB	7.943651e-01
12061	POLD1	7.904144e-01
12062	POLD2	8.480376e-01
12063	POLD3	8.680416e-01
12064	POLD4	1
12065	POLDIP2	5.760690e-02
12066	POLDIP3	1
12067	POLE	9.990863e-01
12068	POLE2	3.951320e-01
12069	POLE3	1
12070	POLE4	8.342966e-02
12071	POLG	9.751559e-01
12072	POLG2	5.093856e-01
12073	POLH	1
12074	POLI	4.398581e-01
12075	POLK	6.824004e-01
12076	POLL	7.062043e-01
12077	POLM	1
12078	POLN	5.622177e-01
12079	POLQ	9.344938e-01
12080	POLR1A	1
12081	POLR1B	9.906592e-01
12082	POLR1C	1
12083	POLR1D	4.729865e-01
12084	POLR1E	6.081698e-01
12085	POLR2A	9.966048e-01
12086	POLR2B	3.505210e-01
12087	POLR2C	1
12088	POLR2D	1.898582e-01
12089	POLR2E	1.306065e-01
12090	POLR2F	1
12091	POLR2G	1
12092	POLR2H	1
12093	POLR2I	1
12094	POLR2J	1
12095	POLR2J2	1
12096	POLR2K	1
12097	POLR2L	1
12098	POLR3A	1
12099	POLR3B	1
12100	POLR3C	1
12101	POLR3D	4.578968e-01
12102	POLR3E	3.142126e-01
12103	POLR3F	1
12104	POLR3G	5.805016e-01
12105	POLR3GL	1
12106	POLR3H	1.973263e-01
12107	POLR3K	1
12108	POLRMT	9.035378e-01
12109	POM121	7.605668e-01
12110	POM121C	1
12111	POM121L12	5.741913e-01
12112	POMC	5.999738e-01
12113	POMGNT1	8.714336e-01
12114	POMP	1
12115	POMT1	1
12116	POMT2	1
12117	POMZP3	1
12118	PON1	7.007528e-03
12119	PON2	5.736239e-01
12120	PON3	5.970475e-01
12121	POP1	9.334427e-01
12122	POP4	4.259515e-01
12123	POP5	5.214515e-01
Done

Running MutSig 2:
Scatter job 134: processing genes 12034 - 12123
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
POLQ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.092556e-01	ci left: 3.034440e-02	ci right 3.753044e-02	k: 338	n:10000
Cons ci ratio: 4.656160e-02	ci left: 4.050199e-01	ci right 4.244298e-01	k: 4147	n:10000
KS ci ratio: 2.202549e-01	ci left: 2.731161e-02	ci right 3.416536e-02	k: 306	n:10000
POLQ   10000 perm   2 sec   (4061 perm/sec)   p_kst 3.060000e-02   p_cons 4.147000e-01   p_joint 3.380000e-02

Joint ci ratio: 1.240530e-01	ci left: 4.459306e-02	ci right 5.053936e-02	k: 950	n:20000
Cons ci ratio: 3.308697e-02	ci left: 4.055159e-01	ci right 4.192096e-01	k: 8247	n:20000
KS ci ratio: 1.573407e-01	ci left: 2.772743e-02	ci right 3.251047e-02	k: 601	n:20000
POLQ   20000 perm   8 sec   (2591 perm/sec)   p_kst 3.005000e-02   p_cons 4.123500e-01   p_joint 4.750000e-02

Joint ci ratio: 1.142889e-01	ci left: 3.557287e-02	ci right 3.991724e-02	k: 1131	n:30000
Cons ci ratio: 2.715140e-02	ci left: 4.043602e-01	ci right 4.155239e-01	k: 12298	n:30000
KS ci ratio: 1.276696e-01	ci left: 2.851845e-02	ci right 3.243985e-02	k: 913	n:30000
POLQ   30000 perm   11 sec   (2832 perm/sec)   p_kst 3.043333e-02   p_cons 4.099333e-01   p_joint 3.770000e-02

Joint ci ratio: 1.121251e-01	ci left: 2.798515e-02	ci right 3.133359e-02	k: 1185	n:40000
Cons ci ratio: 2.355350e-02	ci left: 4.043009e-01	ci right 4.139623e-01	k: 16365	n:40000
KS ci ratio: 1.118339e-01	ci left: 2.813107e-02	ci right 3.148765e-02	k: 1191	n:40000
POLQ   40000 perm   13 sec   (2969 perm/sec)   p_kst 2.977500e-02   p_cons 4.091250e-01   p_joint 2.962500e-02

Joint ci ratio: 1.071706e-01	ci left: 2.466167e-02	ci right 2.747372e-02	k: 1302	n:50000
Cons ci ratio: 2.105685e-02	ci left: 4.050454e-01	ci right 4.136852e-01	k: 20468	n:50000
KS ci ratio: 9.988940e-02	ci left: 2.838549e-02	ci right 3.138942e-02	k: 1493	n:50000
POLQ   50000 perm   16 sec   (3047 perm/sec)   p_kst 2.986000e-02   p_cons 4.093600e-01   p_joint 2.604000e-02

Joint ci ratio: 9.002310e-02	ci left: 2.925260e-02	ci right 3.202638e-02	k: 1837	n:60000
Cons ci ratio: 1.924525e-02	ci left: 4.048459e-01	ci right 4.127296e-01	k: 24527	n:60000
KS ci ratio: 9.149713e-02	ci left: 2.832353e-02	ci right 3.105554e-02	k: 1780	n:60000
POLQ   60000 perm   19 sec   (3089 perm/sec)   p_kst 2.966667e-02   p_cons 4.087833e-01   p_joint 3.061667e-02

Outputting figure to mutsig2_images.part000000000134/POLQ.18_7893_60000_0.029667_0.40878_0.030617.png
                gene_name: POLQ
               theta_stop: 0.091 
                    nperm: 60000 
                     p_ks: 0.030 
        ci_ks_bounds_left: 0.028 
       ci_ks_bounds_right: 0.031 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.031 
     ci_joint_bounds_left: 0.029 
    ci_joint_bounds_right: 0.032 

Current progress: 3 percent done.
PODXL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.876749e-01	ci left: 3.786599e-02	ci right 4.580373e-02	k: 417	n:10000
Cons ci ratio: 6.490955e-03	ci left: 9.700550e-01	ci right 9.764653e-01	k: 9734	n:10000
KS ci ratio: 8.163954e-01	ci left: 1.379226e-03	ci right 3.328943e-03	k: 22	n:10000
PODXL2   10000 perm   2 sec   (6241 perm/sec)   p_kst 2.200000e-03   p_cons 9.734000e-01   p_joint 4.170000e-02

Joint ci ratio: 1.732762e-01	ci left: 2.278476e-02	ci right 2.715484e-02	k: 498	n:20000
Cons ci ratio: 4.699620e-03	ci left: 9.697228e-01	ci right 9.743386e-01	k: 19442	n:20000
KS ci ratio: 5.902971e-01	ci left: 1.556389e-03	ci right 2.894955e-03	k: 43	n:20000
PODXL2   20000 perm   4 sec   (5697 perm/sec)   p_kst 2.150000e-03   p_cons 9.721000e-01   p_joint 2.490000e-02

Joint ci ratio: 1.813614e-01	ci left: 1.394148e-02	ci right 1.675352e-02	k: 459	n:30000
Cons ci ratio: 3.838562e-03	ci left: 9.701390e-01	ci right 9.739022e-01	k: 29162	n:30000
KS ci ratio: 4.819796e-01	ci left: 1.672573e-03	ci right 2.760773e-03	k: 65	n:30000
PODXL2   30000 perm   5 sec   (5507 perm/sec)   p_kst 2.166667e-03   p_cons 9.720667e-01   p_joint 1.530000e-02

Joint ci ratio: 1.759974e-01	ci left: 1.117113e-02	ci right 1.335053e-02	k: 489	n:40000
Cons ci ratio: 3.298798e-03	ci left: 9.708245e-01	ci right 9.740565e-01	k: 38899	n:40000
KS ci ratio: 4.462897e-01	ci left: 1.497267e-03	ci right 2.377565e-03	k: 76	n:40000
PODXL2   40000 perm   7 sec   (5364 perm/sec)   p_kst 1.900000e-03   p_cons 9.724750e-01   p_joint 1.222500e-02

Joint ci ratio: 1.300740e-01	ci left: 1.667845e-02	ci right 1.901801e-02	k: 891	n:50000
Cons ci ratio: 2.914584e-03	ci left: 9.716646e-01	ci right 9.745201e-01	k: 48656	n:50000
KS ci ratio: 3.896565e-01	ci left: 1.627567e-03	ci right 2.432010e-03	k: 100	n:50000
PODXL2   50000 perm   10 sec   (5247 perm/sec)   p_kst 2.000000e-03   p_cons 9.731200e-01   p_joint 1.782000e-02

Joint ci ratio: 1.398057e-01	ci left: 1.202846e-02	ci right 1.385244e-02	k: 775	n:60000
Cons ci ratio: 2.641115e-03	ci left: 9.721834e-01	ci right 9.747706e-01	k: 58410	n:60000
KS ci ratio: 3.574844e-01	ci left: 1.643293e-03	ci right 2.372891e-03	k: 119	n:60000
PODXL2   60000 perm   12 sec   (5136 perm/sec)   p_kst 1.983333e-03   p_cons 9.735000e-01   p_joint 1.291667e-02

Joint ci ratio: 1.461581e-01	ci left: 9.427566e-03	ci right 1.092774e-02	k: 711	n:70000
Cons ci ratio: 2.456578e-03	ci left: 9.720351e-01	ci right 9.744398e-01	k: 68128	n:70000
KS ci ratio: 3.421689e-01	ci left: 1.551864e-03	ci right 2.204822e-03	k: 130	n:70000
PODXL2   70000 perm   14 sec   (5037 perm/sec)   p_kst 1.857143e-03   p_cons 9.732571e-01   p_joint 1.015714e-02

Joint ci ratio: 1.441228e-01	ci left: 8.501790e-03	ci right 9.834170e-03	k: 732	n:80000
Cons ci ratio: 2.295407e-03	ci left: 9.721721e-01	ci right 9.744184e-01	k: 77865	n:80000
KS ci ratio: 3.135431e-01	ci left: 1.644720e-03	ci right 2.267287e-03	k: 155	n:80000
PODXL2   80000 perm   16 sec   (4942 perm/sec)   p_kst 1.937500e-03   p_cons 9.733125e-01   p_joint 9.150000e-03

Joint ci ratio: 1.414971e-01	ci left: 7.856954e-03	ci right 9.063938e-03	k: 760	n:90000
Cons ci ratio: 2.156260e-03	ci left: 9.724297e-01	ci right 9.745396e-01	k: 87615	n:90000
KS ci ratio: 3.021505e-01	ci left: 1.585003e-03	ci right 2.158978e-03	k: 167	n:90000
PODXL2   90000 perm   19 sec   (4859 perm/sec)   p_kst 1.855556e-03   p_cons 9.735000e-01   p_joint 8.444444e-03

Joint ci ratio: 1.363293e-01	ci left: 7.640697e-03	ci right 8.768108e-03	k: 819	n:100000
Cons ci ratio: 2.050716e-03	ci left: 9.723533e-01	ci right 9.743591e-01	k: 97337	n:100000
KS ci ratio: 2.841150e-01	ci left: 1.630346e-03	ci right 2.179190e-03	k: 189	n:100000
PODXL2   100000 perm   21 sec   (4767 perm/sec)   p_kst 1.890000e-03   p_cons 9.733700e-01   p_joint 8.190000e-03

Joint ci ratio: 1.380006e-01	ci left: 6.779078e-03	ci right 7.792615e-03	k: 800	n:110000
Cons ci ratio: 1.958915e-03	ci left: 9.723025e-01	ci right 9.742179e-01	k: 107060	n:110000
KS ci ratio: 2.735282e-01	ci left: 1.608963e-03	ci right 2.126957e-03	k: 204	n:110000
PODXL2   110000 perm   23 sec   (4692 perm/sec)   p_kst 1.854545e-03   p_cons 9.732727e-01   p_joint 7.272727e-03

Joint ci ratio: 1.340567e-01	ci left: 6.600502e-03	ci right 7.556886e-03	k: 848	n:120000
Cons ci ratio: 1.845771e-03	ci left: 9.731771e-01	ci right 9.749832e-01	k: 116891	n:120000
KS ci ratio: 2.622575e-01	ci left: 1.614813e-03	ci right 2.109758e-03	k: 222	n:120000
PODXL2   120000 perm   26 sec   (4609 perm/sec)   p_kst 1.850000e-03   p_cons 9.740917e-01   p_joint 7.066667e-03

Joint ci ratio: 1.321490e-01	ci left: 6.278605e-03	ci right 7.174380e-03	k: 873	n:130000
Cons ci ratio: 1.777635e-03	ci left: 9.730892e-01	ci right 9.748280e-01	k: 126616	n:130000
KS ci ratio: 2.522743e-01	ci left: 1.620133e-03	ci right 2.094836e-03	k: 240	n:130000
PODXL2   130000 perm   29 sec   (4536 perm/sec)   p_kst 1.846154e-03   p_cons 9.739692e-01   p_joint 6.715385e-03

Joint ci ratio: 1.325631e-01	ci left: 5.795505e-03	ci right 6.625146e-03	k: 868	n:140000
Cons ci ratio: 1.712158e-03	ci left: 9.731457e-01	ci right 9.748203e-01	k: 136359	n:140000
KS ci ratio: 2.396704e-01	ci left: 1.678690e-03	ci right 2.142329e-03	k: 266	n:140000
PODXL2   140000 perm   31 sec   (4468 perm/sec)   p_kst 1.900000e-03   p_cons 9.739929e-01   p_joint 6.200000e-03

Joint ci ratio: 1.371917e-01	ci left: 5.041821e-03	ci right 5.790826e-03	k: 811	n:150000
Cons ci ratio: 1.653202e-03	ci left: 9.732024e-01	ci right 9.748192e-01	k: 146103	n:150000
KS ci ratio: 2.303652e-01	ci left: 1.704814e-03	ci right 2.154788e-03	k: 288	n:150000
PODXL2   150000 perm   34 sec   (4397 perm/sec)   p_kst 1.920000e-03   p_cons 9.740200e-01   p_joint 5.406667e-03

Joint ci ratio: 1.327686e-01	ci left: 5.058853e-03	ci right 5.784246e-03	k: 866	n:160000
Cons ci ratio: 1.600141e-03	ci left: 9.732465e-01	ci right 9.748112e-01	k: 155846	n:160000
KS ci ratio: 2.182325e-01	ci left: 1.792941e-03	ci right 2.237913e-03	k: 321	n:160000
PODXL2   160000 perm   37 sec   (4332 perm/sec)   p_kst 2.006250e-03   p_cons 9.740375e-01   p_joint 5.412500e-03

Joint ci ratio: 1.374058e-01	ci left: 4.437209e-03	ci right 5.097502e-03	k: 809	n:170000
Cons ci ratio: 1.547542e-03	ci left: 9.734293e-01	ci right 9.749427e-01	k: 165613	n:170000
KS ci ratio: 2.123785e-01	ci left: 1.787647e-03	ci right 2.217855e-03	k: 339	n:170000
PODXL2   170000 perm   40 sec   (4269 perm/sec)   p_kst 1.994118e-03   p_cons 9.741941e-01   p_joint 4.758824e-03

Joint ci ratio: 9.147104e-02	ci left: 9.637774e-03	ci right 1.056699e-02	k: 1817	n:180000
Cons ci ratio: 1.504919e-03	ci left: 9.734177e-01	ci right 9.748892e-01	k: 175349	n:180000
KS ci ratio: 2.061082e-01	ci left: 1.798889e-03	ci right 2.217410e-03	k: 360	n:180000
PODXL2   180000 perm   43 sec   (4209 perm/sec)   p_kst 2.000000e-03   p_cons 9.741611e-01   p_joint 1.009444e-02

Joint ci ratio: 9.205967e-02	ci left: 9.017258e-03	ci right 9.892544e-03	k: 1795	n:190000
Cons ci ratio: 1.467773e-03	ci left: 9.733332e-01	ci right 9.747681e-01	k: 185071	n:190000
KS ci ratio: 2.001001e-01	ci left: 1.814114e-03	ci right 2.222372e-03	k: 382	n:190000
PODXL2   190000 perm   46 sec   (4142 perm/sec)   p_kst 2.010526e-03   p_cons 9.740579e-01   p_joint 9.447368e-03

Joint ci ratio: 9.081458e-02	ci left: 8.810635e-03	ci right 9.653682e-03	k: 1845	n:200000
Cons ci ratio: 1.430259e-03	ci left: 9.733641e-01	ci right 9.747621e-01	k: 194814	n:200000
KS ci ratio: 1.950718e-01	ci left: 1.818462e-03	ci right 2.216193e-03	k: 402	n:200000
PODXL2   200000 perm   49 sec   (4086 perm/sec)   p_kst 2.010000e-03   p_cons 9.740700e-01   p_joint 9.225000e-03

Joint ci ratio: 8.949924e-02	ci left: 8.647047e-03	ci right 9.461829e-03	k: 1900	n:210000
Cons ci ratio: 1.395482e-03	ci left: 9.733924e-01	ci right 9.747564e-01	k: 204557	n:210000
KS ci ratio: 1.904044e-01	ci left: 1.822512e-03	ci right 2.210488e-03	k: 422	n:210000
PODXL2   210000 perm   52 sec   (4027 perm/sec)   p_kst 2.009524e-03   p_cons 9.740810e-01   p_joint 9.047619e-03

Joint ci ratio: 8.812559e-02	ci left: 8.520645e-03	ci right 9.310557e-03	k: 1960	n:220000
Cons ci ratio: 1.361896e-03	ci left: 9.734645e-01	ci right 9.747957e-01	k: 214310	n:220000
KS ci ratio: 1.846011e-01	ci left: 1.856641e-03	ci right 2.238488e-03	k: 449	n:220000
PODXL2   220000 perm   56 sec   (3949 perm/sec)   p_kst 2.040909e-03   p_cons 9.741364e-01   p_joint 8.909091e-03

Joint ci ratio: 8.784961e-02	ci left: 8.205401e-03	ci right 8.963583e-03	k: 1973	n:230000
Cons ci ratio: 1.383616e-03	ci left: 9.714672e-01	ci right 9.728165e-01	k: 223594	n:230000
KS ci ratio: 1.821913e-01	ci left: 1.825693e-03	ci right 2.195732e-03	k: 461	n:230000
PODXL2   230000 perm   59 sec   (3898 perm/sec)   p_kst 2.004348e-03   p_cons 9.721478e-01   p_joint 8.578261e-03

Joint ci ratio: 8.921979e-02	ci left: 7.623017e-03	ci right 8.338942e-03	k: 1914	n:240000
Cons ci ratio: 1.353071e-03	ci left: 9.715387e-01	ci right 9.728582e-01	k: 233329	n:240000
KS ci ratio: 1.794943e-01	ci left: 1.805314e-03	ci right 2.165217e-03	k: 475	n:240000
PODXL2   240000 perm   62 sec   (3848 perm/sec)   p_kst 1.979167e-03   p_cons 9.722042e-01   p_joint 7.975000e-03

Joint ci ratio: 8.851501e-02	ci left: 7.439309e-03	ci right 8.132176e-03	k: 1945	n:250000
Cons ci ratio: 1.326420e-03	ci left: 9.715238e-01	ci right 9.728172e-01	k: 243044	n:250000
KS ci ratio: 1.770947e-01	ci left: 1.782779e-03	ci right 2.132929e-03	k: 488	n:250000
PODXL2   250000 perm   66 sec   (3800 perm/sec)   p_kst 1.952000e-03   p_cons 9.721760e-01   p_joint 7.780000e-03

Joint ci ratio: 8.934145e-02	ci left: 7.021493e-03	ci right 7.681868e-03	k: 1910	n:260000
Cons ci ratio: 1.300452e-03	ci left: 9.715453e-01	ci right 9.728134e-01	k: 252768	n:260000
KS ci ratio: 1.727325e-01	ci left: 1.806157e-03	ci right 2.151250e-03	k: 513	n:260000
PODXL2   260000 perm   69 sec   (3748 perm/sec)   p_kst 1.973077e-03   p_cons 9.721846e-01   p_joint 7.346154e-03

Joint ci ratio: 9.250140e-02	ci left: 6.301650e-03	ci right 6.916420e-03	k: 1783	n:270000
Cons ci ratio: 1.274727e-03	ci left: 9.716179e-01	ci right 9.728608e-01	k: 262506	n:270000
KS ci ratio: 1.697857e-01	ci left: 1.803071e-03	ci right 2.141096e-03	k: 531	n:270000
PODXL2   270000 perm   73 sec   (3700 perm/sec)   p_kst 1.966667e-03   p_cons 9.722444e-01   p_joint 6.603704e-03

Joint ci ratio: 9.248631e-02	ci left: 6.080048e-03	ci right 6.673096e-03	k: 1784	n:280000
Cons ci ratio: 1.252619e-03	ci left: 9.715916e-01	ci right 9.728129e-01	k: 272218	n:280000
KS ci ratio: 1.672899e-01	ci left: 1.793407e-03	ci right 2.124180e-03	k: 547	n:280000
PODXL2   280000 perm   77 sec   (3653 perm/sec)   p_kst 1.953571e-03   p_cons 9.722071e-01   p_joint 6.371429e-03

Joint ci ratio: 9.142052e-02	ci left: 6.011879e-03	ci right 6.591158e-03	k: 1826	n:290000
Cons ci ratio: 1.229815e-03	ci left: 9.716475e-01	ci right 9.728465e-01	k: 281953	n:290000
KS ci ratio: 1.647546e-01	ci left: 1.787750e-03	ci right 2.111987e-03	k: 564	n:290000
PODXL2   290000 perm   80 sec   (3608 perm/sec)   p_kst 1.944828e-03   p_cons 9.722517e-01   p_joint 6.296552e-03

Joint ci ratio: 8.955077e-02	ci left: 6.062348e-03	ci right 6.633918e-03	k: 1903	n:300000
Cons ci ratio: 1.208732e-03	ci left: 9.716762e-01	ci right 9.728547e-01	k: 291681	n:300000
KS ci ratio: 1.616371e-01	ci left: 1.798498e-03	ci right 2.117912e-03	k: 586	n:300000
PODXL2   300000 perm   84 sec   (3565 perm/sec)   p_kst 1.953333e-03   p_cons 9.722700e-01   p_joint 6.343333e-03

Joint ci ratio: 8.188328e-02	ci left: 7.038095e-03	ci right 7.642137e-03	k: 2274	n:310000
Cons ci ratio: 1.189196e-03	ci left: 9.716804e-01	ci right 9.728398e-01	k: 301402	n:310000
KS ci ratio: 1.615044e-01	ci left: 1.743573e-03	ci right 2.052954e-03	k: 587	n:310000
PODXL2   310000 perm   88 sec   (3524 perm/sec)   p_kst 1.893548e-03   p_cons 9.722645e-01   p_joint 7.335484e-03

Joint ci ratio: 8.073907e-02	ci left: 7.017146e-03	ci right 7.610578e-03	k: 2339	n:320000
Cons ci ratio: 1.170509e-03	ci left: 9.716877e-01	ci right 9.728288e-01	k: 311124	n:320000
KS ci ratio: 1.590880e-01	ci left: 1.743080e-03	ci right 2.047304e-03	k: 605	n:320000
PODXL2   320000 perm   92 sec   (3481 perm/sec)   p_kst 1.890625e-03   p_cons 9.722625e-01   p_joint 7.309375e-03

Joint ci ratio: 7.841904e-02	ci left: 7.220336e-03	ci right 7.812604e-03	k: 2479	n:330000
Cons ci ratio: 1.108338e-03	ci left: 9.737544e-01	ci right 9.748372e-01	k: 321519	n:330000
KS ci ratio: 1.576654e-01	ci left: 1.722270e-03	ci right 2.019920e-03	k: 616	n:330000
PODXL2   330000 perm   96 sec   (3439 perm/sec)   p_kst 1.866667e-03   p_cons 9.743000e-01   p_joint 7.512121e-03

Joint ci ratio: 7.722907e-02	ci left: 7.230037e-03	ci right 7.813698e-03	k: 2556	n:340000
Cons ci ratio: 1.093069e-03	ci left: 9.737091e-01	ci right 9.747769e-01	k: 331244	n:340000
KS ci ratio: 1.550484e-01	ci left: 1.730964e-03	ci right 2.024689e-03	k: 637	n:340000
PODXL2   340000 perm   100 sec   (3399 perm/sec)   p_kst 1.873529e-03   p_cons 9.742471e-01   p_joint 7.517647e-03

Joint ci ratio: 7.597552e-02	ci left: 7.261674e-03	ci right 7.837953e-03	k: 2641	n:350000
Cons ci ratio: 1.076571e-03	ci left: 9.737531e-01	ci right 9.748048e-01	k: 340999	n:350000
KS ci ratio: 1.520957e-01	ci left: 1.750193e-03	ci right 2.041010e-03	k: 662	n:350000
PODXL2   350000 perm   104 sec   (3362 perm/sec)   p_kst 1.891429e-03   p_cons 9.742829e-01   p_joint 7.545714e-03

Joint ci ratio: 7.676304e-02	ci left: 6.915503e-03	ci right 7.470252e-03	k: 2588	n:360000
Cons ci ratio: 1.061266e-03	ci left: 9.737723e-01	ci right 9.748090e-01	k: 350746	n:360000
KS ci ratio: 1.501829e-01	ci left: 1.747013e-03	ci right 2.033323e-03	k: 679	n:360000
PODXL2   360000 perm   108 sec   (3324 perm/sec)   p_kst 1.886111e-03   p_cons 9.742944e-01   p_joint 7.188889e-03

Joint ci ratio: 7.626784e-02	ci left: 6.818718e-03	ci right 7.362017e-03	k: 2622	n:370000
Cons ci ratio: 1.046426e-03	ci left: 9.737987e-01	ci right 9.748209e-01	k: 360496	n:370000
KS ci ratio: 1.481277e-01	ci left: 1.749231e-03	ci right 2.031634e-03	k: 698	n:370000
PODXL2   370000 perm   113 sec   (3287 perm/sec)   p_kst 1.886486e-03   p_cons 9.743135e-01   p_joint 7.086486e-03

Joint ci ratio: 7.575330e-02	ci left: 6.732203e-03	ci right 7.264830e-03	k: 2658	n:380000
Cons ci ratio: 1.033223e-03	ci left: 9.737733e-01	ci right 9.747826e-01	k: 370227	n:380000
KS ci ratio: 1.451454e-01	ci left: 1.776717e-03	ci right 2.057282e-03	k: 727	n:380000
PODXL2   380000 perm   117 sec   (3250 perm/sec)   p_kst 1.913158e-03   p_cons 9.742816e-01   p_joint 6.994737e-03

Joint ci ratio: 7.665043e-02	ci left: 6.406111e-03	ci right 6.919208e-03	k: 2597	n:390000
Cons ci ratio: 1.019932e-03	ci left: 9.737778e-01	ci right 9.747741e-01	k: 379969	n:390000
KS ci ratio: 1.444549e-01	ci left: 1.748456e-03	ci right 2.023132e-03	k: 734	n:390000
PODXL2   390000 perm   121 sec   (3216 perm/sec)   p_kst 1.882051e-03   p_cons 9.742795e-01   p_joint 6.658974e-03

Joint ci ratio: 7.573798e-02	ci left: 6.400457e-03	ci right 6.906730e-03	k: 2660	n:400000
Cons ci ratio: 1.006437e-03	ci left: 9.738175e-01	ci right 9.748006e-01	k: 389725	n:400000
KS ci ratio: 1.423398e-01	ci left: 1.757772e-03	ci right 2.029525e-03	k: 756	n:400000
PODXL2   400000 perm   126 sec   (3180 perm/sec)   p_kst 1.890000e-03   p_cons 9.743125e-01   p_joint 6.650000e-03

Joint ci ratio: 7.141467e-02	ci left: 7.034508e-03	ci right 7.557857e-03	k: 2990	n:410000
Cons ci ratio: 9.945289e-04	ci left: 9.738012e-01	ci right 9.747726e-01	k: 399459	n:410000
KS ci ratio: 1.408595e-01	ci left: 1.752541e-03	ci right 2.020430e-03	k: 772	n:410000
PODXL2   410000 perm   130 sec   (3146 perm/sec)   p_kst 1.882927e-03   p_cons 9.742902e-01   p_joint 7.292683e-03

Joint ci ratio: 7.143294e-02	ci left: 6.864660e-03	ci right 7.375508e-03	k: 2989	n:420000
Cons ci ratio: 9.822855e-04	ci left: 9.738242e-01	ci right 9.747836e-01	k: 409209	n:420000
KS ci ratio: 1.394244e-01	ci left: 1.747573e-03	ci right 2.011755e-03	k: 788	n:420000
PODXL2   420000 perm   135 sec   (3114 perm/sec)   p_kst 1.876190e-03   p_cons 9.743071e-01   p_joint 7.116667e-03

Joint ci ratio: 7.137883e-02	ci left: 6.716419e-03	ci right 7.215841e-03	k: 2994	n:430000
Cons ci ratio: 9.714748e-04	ci left: 9.737945e-01	ci right 9.747433e-01	k: 418937	n:430000
KS ci ratio: 1.379465e-01	ci left: 1.745095e-03	ci right 2.005876e-03	k: 805	n:430000
PODXL2   430000 perm   140 sec   (3080 perm/sec)   p_kst 1.872093e-03   p_cons 9.742721e-01   p_joint 6.962791e-03

Joint ci ratio: 7.111012e-02	ci left: 6.615102e-03	ci right 7.105062e-03	k: 3017	n:440000
Cons ci ratio: 9.597491e-04	ci left: 9.738328e-01	ci right 9.747701e-01	k: 428694	n:440000
KS ci ratio: 1.369320e-01	ci left: 1.731768e-03	ci right 1.988499e-03	k: 817	n:440000
PODXL2   440000 perm   144 sec   (3050 perm/sec)   p_kst 1.856818e-03   p_cons 9.743045e-01   p_joint 6.856818e-03

Joint ci ratio: 7.145002e-02	ci left: 6.406963e-03	ci right 6.883867e-03	k: 2989	n:450000
Cons ci ratio: 9.481838e-04	ci left: 9.738828e-01	ci right 9.748088e-01	k: 438457	n:450000
KS ci ratio: 1.355311e-01	ci left: 1.729774e-03	ci right 1.983375e-03	k: 834	n:450000
PODXL2   450000 perm   149 sec   (3017 perm/sec)   p_kst 1.853333e-03   p_cons 9.743489e-01   p_joint 6.642222e-03

Joint ci ratio: 7.187989e-02	ci left: 6.192933e-03	ci right 6.656795e-03	k: 2954	n:460000
Cons ci ratio: 9.375952e-04	ci left: 9.739000e-01	ci right 9.748157e-01	k: 448206	n:460000
KS ci ratio: 1.344097e-01	ci left: 1.721577e-03	ci right 1.971721e-03	k: 848	n:460000
PODXL2   460000 perm   154 sec   (2983 perm/sec)   p_kst 1.843478e-03   p_cons 9.743609e-01   p_joint 6.421739e-03

Joint ci ratio: 7.159285e-02	ci left: 6.111307e-03	ci right 6.567151e-03	k: 2978	n:470000
Cons ci ratio: 9.277879e-04	ci left: 9.738930e-01	ci right 9.747990e-01	k: 457944	n:470000
KS ci ratio: 1.330072e-01	ci left: 1.721965e-03	ci right 1.969348e-03	k: 866	n:470000
PODXL2   470000 perm   159 sec   (2951 perm/sec)   p_kst 1.842553e-03   p_cons 9.743489e-01   p_joint 6.336170e-03

Joint ci ratio: 7.083594e-02	ci left: 6.114948e-03	ci right 6.566042e-03	k: 3042	n:480000
Cons ci ratio: 9.178228e-04	ci left: 9.739115e-01	ci right 9.748078e-01	k: 467694	n:480000
KS ci ratio: 1.315732e-01	ci left: 1.724364e-03	ci right 1.969212e-03	k: 885	n:480000
PODXL2   480000 perm   164 sec   (2919 perm/sec)   p_kst 1.843750e-03   p_cons 9.743625e-01   p_joint 6.337500e-03

Joint ci ratio: 7.057267e-02	ci left: 6.036253e-03	ci right 6.479820e-03	k: 3065	n:490000
Cons ci ratio: 9.091362e-04	ci left: 9.738757e-01	ci right 9.747635e-01	k: 477418	n:490000
KS ci ratio: 1.304014e-01	ci left: 1.720755e-03	ci right 1.962747e-03	k: 901	n:490000
PODXL2   490000 perm   170 sec   (2888 perm/sec)   p_kst 1.838776e-03   p_cons 9.743224e-01   p_joint 6.255102e-03

Joint ci ratio: 6.707792e-02	ci left: 6.556371e-03	ci right 7.013373e-03	k: 3391	n:500000
Cons ci ratio: 9.006177e-04	ci left: 9.738455e-01	ci right 9.747250e-01	k: 487144	n:500000
KS ci ratio: 1.287694e-01	ci left: 1.730850e-03	ci right 1.970981e-03	k: 924	n:500000
PODXL2   500000 perm   175 sec   (2858 perm/sec)   p_kst 1.848000e-03   p_cons 9.742880e-01   p_joint 6.782000e-03

Joint ci ratio: 6.753486e-02	ci left: 6.341040e-03	ci right 6.786162e-03	k: 3346	n:510000
Cons ci ratio: 8.914953e-04	ci left: 9.738640e-01	ci right 9.747345e-01	k: 496894	n:510000
KS ci ratio: 1.274669e-01	ci left: 1.732973e-03	ci right 1.970783e-03	k: 943	n:510000
PODXL2   510000 perm   180 sec   (2828 perm/sec)   p_kst 1.849020e-03   p_cons 9.743020e-01   p_joint 6.560784e-03

Joint ci ratio: 6.746818e-02	ci left: 6.232320e-03	ci right 6.669360e-03	k: 3353	n:520000
Cons ci ratio: 8.815925e-04	ci left: 9.739419e-01	ci right 9.748028e-01	k: 506675	n:520000
KS ci ratio: 1.265326e-01	ci left: 1.725713e-03	ci right 1.960662e-03	k: 957	n:520000
PODXL2   520000 perm   186 sec   (2801 perm/sec)   p_kst 1.840385e-03   p_cons 9.743750e-01   p_joint 6.448077e-03

Joint ci ratio: 6.752298e-02	ci left: 6.105441e-03	ci right 6.533945e-03	k: 3348	n:530000
Cons ci ratio: 8.726992e-04	ci left: 9.739770e-01	ci right 9.748292e-01	k: 516435	n:530000
KS ci ratio: 1.256186e-01	ci left: 1.718734e-03	ci right 1.950916e-03	k: 971	n:530000
PODXL2   530000 perm   191 sec   (2772 perm/sec)   p_kst 1.832075e-03   p_cons 9.744057e-01   p_joint 6.316981e-03

Joint ci ratio: 6.394534e-02	ci left: 6.690049e-03	ci right 7.133785e-03	k: 3731	n:540000
Cons ci ratio: 8.646463e-04	ci left: 9.739771e-01	ci right 9.748215e-01	k: 526177	n:540000
KS ci ratio: 1.247241e-01	ci left: 1.712020e-03	ci right 1.941526e-03	k: 985	n:540000
PODXL2   540000 perm   197 sec   (2745 perm/sec)   p_kst 1.824074e-03   p_cons 9.744019e-01   p_joint 6.909259e-03

Joint ci ratio: 6.401851e-02	ci left: 6.554084e-03	ci right 6.989318e-03	k: 3723	n:550000
Cons ci ratio: 8.565001e-04	ci left: 9.739957e-01	ci right 9.748320e-01	k: 535929	n:550000
KS ci ratio: 1.235394e-01	ci left: 1.714365e-03	ci right 1.941843e-03	k: 1004	n:550000
PODXL2   550000 perm   202 sec   (2719 perm/sec)   p_kst 1.825455e-03   p_cons 9.744164e-01   p_joint 6.769091e-03

Joint ci ratio: 6.441537e-02	ci left: 6.357959e-03	ci right 6.782884e-03	k: 3678	n:560000
Cons ci ratio: 8.493091e-04	ci left: 9.739704e-01	ci right 9.747997e-01	k: 545657	n:560000
KS ci ratio: 1.217345e-01	ci left: 1.735681e-03	ci right 1.962380e-03	k: 1034	n:560000
PODXL2   560000 perm   208 sec   (2692 perm/sec)   p_kst 1.846429e-03   p_cons 9.743875e-01   p_joint 6.567857e-03

Joint ci ratio: 6.431362e-02	ci left: 6.267121e-03	ci right 6.685288e-03	k: 3690	n:570000
Cons ci ratio: 8.413188e-04	ci left: 9.740044e-01	ci right 9.748259e-01	k: 555418	n:570000
KS ci ratio: 1.204036e-01	ci left: 1.744359e-03	ci right 1.969524e-03	k: 1057	n:570000
PODXL2   570000 perm   214 sec   (2665 perm/sec)   p_kst 1.854386e-03   p_cons 9.744175e-01   p_joint 6.473684e-03

Joint ci ratio: 6.373761e-02	ci left: 6.272735e-03	ci right 6.687390e-03	k: 3757	n:580000
Cons ci ratio: 8.334621e-04	ci left: 9.740424e-01	ci right 9.748563e-01	k: 565182	n:580000
KS ci ratio: 1.193923e-01	ci left: 1.744388e-03	ci right 1.967531e-03	k: 1075	n:580000
PODXL2   580000 perm   220 sec   (2641 perm/sec)   p_kst 1.853448e-03   p_cons 9.744517e-01   p_joint 6.477586e-03

Joint ci ratio: 6.376675e-02	ci left: 6.161403e-03	ci right 6.568891e-03	k: 3754	n:590000
Cons ci ratio: 8.259326e-04	ci left: 9.740724e-01	ci right 9.748789e-01	k: 574942	n:590000
KS ci ratio: 1.185691e-01	ci left: 1.739489e-03	ci right 1.960364e-03	k: 1090	n:590000
PODXL2   590000 perm   226 sec   (2615 perm/sec)   p_kst 1.847458e-03   p_cons 9.744780e-01   p_joint 6.362712e-03

Joint ci ratio: 6.329692e-02	ci left: 6.150562e-03	ci right 6.554226e-03	k: 3810	n:600000
Cons ci ratio: 8.184655e-04	ci left: 9.741098e-01	ci right 9.749090e-01	k: 584707	n:600000
KS ci ratio: 1.174968e-01	ci left: 1.742847e-03	ci right 1.962008e-03	k: 1110	n:600000
PODXL2   600000 perm   232 sec   (2590 perm/sec)   p_kst 1.850000e-03   p_cons 9.745117e-01   p_joint 6.350000e-03

Joint ci ratio: 6.278016e-02	ci left: 6.151384e-03	ci right 6.551686e-03	k: 3873	n:610000
Cons ci ratio: 8.118657e-04	ci left: 9.741046e-01	ci right 9.748974e-01	k: 594447	n:610000
KS ci ratio: 1.164017e-01	ci left: 1.747695e-03	ci right 1.965276e-03	k: 1131	n:610000
PODXL2   610000 perm   238 sec   (2567 perm/sec)   p_kst 1.854098e-03   p_cons 9.745033e-01   p_joint 6.349180e-03

Joint ci ratio: 6.231570e-02	ci left: 6.144253e-03	ci right 6.541026e-03	k: 3931	n:620000
Cons ci ratio: 8.052661e-04	ci left: 9.741095e-01	ci right 9.748958e-01	k: 604193	n:620000
KS ci ratio: 1.156889e-01	ci left: 1.741431e-03	ci right 1.956815e-03	k: 1145	n:620000
PODXL2   620000 perm   244 sec   (2544 perm/sec)   p_kst 1.846774e-03   p_cons 9.745048e-01   p_joint 6.340323e-03

Joint ci ratio: 6.545796e-02	ci left: 5.474985e-03	ci right 5.847043e-03	k: 3565	n:630000
Cons ci ratio: 8.315268e-04	ci left: 9.720277e-01	ci right 9.728378e-01	k: 612634	n:630000
KS ci ratio: 1.146923e-01	ci left: 1.744621e-03	ci right 1.958414e-03	k: 1165	n:630000
PODXL2   630000 perm   250 sec   (2521 perm/sec)   p_kst 1.849206e-03   p_cons 9.724349e-01   p_joint 5.658730e-03

Joint ci ratio: 6.531368e-02	ci left: 5.414024e-03	ci right 5.781098e-03	k: 3581	n:640000
Cons ci ratio: 8.256860e-04	ci left: 9.719863e-01	ci right 9.727907e-01	k: 622330	n:640000
KS ci ratio: 1.140587e-01	ci left: 1.737092e-03	ci right 1.948708e-03	k: 1178	n:640000
PODXL2   640000 perm   256 sec   (2499 perm/sec)   p_kst 1.840625e-03   p_cons 9.723906e-01   p_joint 5.595312e-03

Joint ci ratio: 6.484490e-02	ci left: 5.409429e-03	ci right 5.773460e-03	k: 3633	n:650000
Cons ci ratio: 8.196360e-04	ci left: 9.719679e-01	ci right 9.727664e-01	k: 632040	n:650000
KS ci ratio: 1.133403e-01	ci left: 1.732788e-03	ci right 1.942461e-03	k: 1193	n:650000
PODXL2   650000 perm   262 sec   (2477 perm/sec)   p_kst 1.835385e-03   p_cons 9.723692e-01   p_joint 5.589231e-03

Joint ci ratio: 6.466897e-02	ci left: 5.357276e-03	ci right 5.716782e-03	k: 3653	n:660000
Cons ci ratio: 8.133497e-04	ci left: 9.719745e-01	ci right 9.727668e-01	k: 641766	n:660000
KS ci ratio: 1.120794e-01	ci left: 1.746290e-03	ci right 1.955091e-03	k: 1220	n:660000
PODXL2   660000 perm   269 sec   (2456 perm/sec)   p_kst 1.848485e-03   p_cons 9.723727e-01   p_joint 5.534848e-03

Joint ci ratio: 6.417032e-02	ci left: 5.361021e-03	ci right 5.717901e-03	k: 3710	n:670000
Cons ci ratio: 8.065777e-04	ci left: 9.720230e-01	ci right 9.728088e-01	k: 651520	n:670000
KS ci ratio: 1.110381e-01	ci left: 1.753597e-03	ci right 1.961196e-03	k: 1243	n:670000
PODXL2   670000 perm   275 sec   (2435 perm/sec)   p_kst 1.855224e-03   p_cons 9.724179e-01   p_joint 5.537313e-03

Joint ci ratio: 6.370854e-02	ci left: 5.360325e-03	ci right 5.714496e-03	k: 3764	n:680000
Cons ci ratio: 8.008262e-04	ci left: 9.720123e-01	ci right 9.727925e-01	k: 661235	n:680000
KS ci ratio: 1.102434e-01	ci left: 1.753547e-03	ci right 1.959558e-03	k: 1261	n:680000
PODXL2   680000 perm   282 sec   (2414 perm/sec)   p_kst 1.854412e-03   p_cons 9.724044e-01   p_joint 5.535294e-03

Joint ci ratio: 6.313203e-02	ci left: 5.381055e-03	ci right 5.733261e-03	k: 3833	n:690000
Cons ci ratio: 7.947664e-04	ci left: 9.720312e-01	ci right 9.728054e-01	k: 670970	n:690000
KS ci ratio: 1.093373e-01	ci left: 1.757732e-03	ci right 1.962428e-03	k: 1282	n:690000
PODXL2   690000 perm   288 sec   (2393 perm/sec)   p_kst 1.857971e-03   p_cons 9.724203e-01   p_joint 5.555072e-03

Joint ci ratio: 6.375618e-02	ci left: 5.200130e-03	ci right 5.543983e-03	k: 3759	n:700000
Cons ci ratio: 7.891992e-04	ci left: 9.720251e-01	ci right 9.727939e-01	k: 680688	n:700000
KS ci ratio: 1.084531e-01	ci left: 1.761805e-03	ci right 1.965210e-03	k: 1303	n:700000
PODXL2   700000 perm   295 sec   (2373 perm/sec)   p_kst 1.861429e-03   p_cons 9.724114e-01   p_joint 5.370000e-03

Joint ci ratio: 6.406768e-02	ci left: 5.076985e-03	ci right 5.414396e-03	k: 3723	n:710000
Cons ci ratio: 7.836032e-04	ci left: 9.720291e-01	ci right 9.727924e-01	k: 690413	n:710000
KS ci ratio: 1.080403e-01	ci left: 1.750693e-03	ci right 1.951997e-03	k: 1313	n:710000
PODXL2   710000 perm   302 sec   (2354 perm/sec)   p_kst 1.849296e-03   p_cons 9.724127e-01   p_joint 5.243662e-03

Joint ci ratio: 6.350678e-02	ci left: 5.096677e-03	ci right 5.432322e-03	k: 3789	n:720000
Cons ci ratio: 7.783261e-04	ci left: 9.720190e-01	ci right 9.727772e-01	k: 700128	n:720000
KS ci ratio: 1.071870e-01	ci left: 1.754760e-03	ci right 1.954837e-03	k: 1334	n:720000
PODXL2   720000 perm   308 sec   (2335 perm/sec)   p_kst 1.852778e-03   p_cons 9.724000e-01   p_joint 5.262500e-03

Joint ci ratio: 5.590366e-02	ci left: 6.503329e-03	ci right 6.878684e-03	k: 4883	n:730000
Cons ci ratio: 7.420658e-04	ci left: 9.741441e-01	ci right 9.748686e-01	k: 711391	n:730000
KS ci ratio: 1.064323e-01	ci left: 1.756054e-03	ci right 1.954781e-03	k: 1353	n:730000
PODXL2   730000 perm   315 sec   (2316 perm/sec)   p_kst 1.853425e-03   p_cons 9.745082e-01   p_joint 6.689041e-03

Joint ci ratio: 5.552976e-02	ci left: 6.503393e-03	ci right 6.876161e-03	k: 4949	n:740000
Cons ci ratio: 7.371765e-04	ci left: 9.741369e-01	ci right 9.748566e-01	k: 721129	n:740000
KS ci ratio: 1.056547e-01	ci left: 1.758634e-03	ci right 1.956109e-03	k: 1373	n:740000
PODXL2   740000 perm   322 sec   (2296 perm/sec)   p_kst 1.855405e-03   p_cons 9.744986e-01   p_joint 6.687838e-03

Joint ci ratio: 5.616390e-02	ci left: 6.272041e-03	ci right 6.635787e-03	k: 4839	n:750000
Cons ci ratio: 7.319307e-04	ci left: 9.741609e-01	ci right 9.748755e-01	k: 730890	n:750000
KS ci ratio: 1.049694e-01	ci left: 1.758554e-03	ci right 1.954659e-03	k: 1391	n:750000
PODXL2   750000 perm   330 sec   (2276 perm/sec)   p_kst 1.854667e-03   p_cons 9.745200e-01   p_joint 6.452000e-03

Joint ci ratio: 5.576762e-02	ci left: 6.279034e-03	ci right 6.640533e-03	k: 4908	n:760000
Cons ci ratio: 7.276230e-04	ci left: 9.741272e-01	ci right 9.748376e-01	k: 740608	n:760000
KS ci ratio: 1.042602e-01	ci left: 1.759761e-03	ci right 1.954594e-03	k: 1410	n:760000
PODXL2   760000 perm   337 sec   (2257 perm/sec)   p_kst 1.855263e-03   p_cons 9.744842e-01   p_joint 6.457895e-03

Joint ci ratio: 5.306310e-02	ci left: 6.850871e-03	ci right 7.225579e-03	k: 5418	n:770000
Cons ci ratio: 7.227474e-04	ci left: 9.741389e-01	ci right 9.748445e-01	k: 750360	n:770000
KS ci ratio: 1.038202e-01	ci left: 1.752085e-03	ci right 1.945200e-03	k: 1422	n:770000
PODXL2   770000 perm   344 sec   (2238 perm/sec)   p_kst 1.846753e-03   p_cons 9.744935e-01   p_joint 7.036364e-03

Joint ci ratio: 5.340899e-02	ci left: 6.675739e-03	ci right 7.043322e-03	k: 5349	n:780000
Cons ci ratio: 7.186534e-04	ci left: 9.741026e-01	ci right 9.748041e-01	k: 760075	n:780000
KS ci ratio: 1.032775e-01	ci left: 1.748355e-03	ci right 1.939990e-03	k: 1437	n:780000
PODXL2   780000 perm   351 sec   (2220 perm/sec)   p_kst 1.842308e-03   p_cons 9.744551e-01   p_joint 6.857692e-03

Joint ci ratio: 5.308759e-02	ci left: 6.672419e-03	ci right 7.037540e-03	k: 5414	n:790000
Cons ci ratio: 7.141366e-04	ci left: 9.741016e-01	ci right 9.747987e-01	k: 769817	n:790000
KS ci ratio: 1.023208e-01	ci left: 1.759523e-03	ci right 1.950488e-03	k: 1464	n:790000
PODXL2   790000 perm   359 sec   (2202 perm/sec)   p_kst 1.853165e-03   p_cons 9.744519e-01   p_joint 6.853165e-03

Joint ci ratio: 5.283020e-02	ci left: 6.654385e-03	ci right 7.016700e-03	k: 5467	n:800000
Cons ci ratio: 7.095614e-04	ci left: 9.741107e-01	ci right 9.748034e-01	k: 779567	n:800000
KS ci ratio: 1.020086e-01	ci left: 1.748491e-03	ci right 1.937645e-03	k: 1473	n:800000
PODXL2   800000 perm   366 sec   (2185 perm/sec)   p_kst 1.841250e-03   p_cons 9.744588e-01   p_joint 6.833750e-03

Joint ci ratio: 5.291044e-02	ci left: 6.552731e-03	ci right 6.910070e-03	k: 5451	n:810000
Cons ci ratio: 7.048280e-04	ci left: 9.741370e-01	ci right 9.748250e-01	k: 789331	n:810000
KS ci ratio: 1.014595e-01	ci left: 1.746155e-03	ci right 1.933979e-03	k: 1489	n:810000
PODXL2   810000 perm   374 sec   (2167 perm/sec)   p_kst 1.838272e-03   p_cons 9.744827e-01   p_joint 6.729630e-03

Joint ci ratio: 5.361504e-02	ci left: 6.303137e-03	ci right 6.651583e-03	k: 5310	n:820000
Cons ci ratio: 7.008402e-04	ci left: 9.741160e-01	ci right 9.748001e-01	k: 799057	n:820000
KS ci ratio: 1.010201e-01	ci left: 1.740313e-03	ci right 1.926649e-03	k: 1502	n:820000
PODXL2   820000 perm   381 sec   (2150 perm/sec)   p_kst 1.831707e-03   p_cons 9.744598e-01   p_joint 6.475610e-03

Joint ci ratio: 5.322519e-02	ci left: 6.319917e-03	ci right 6.666673e-03	k: 5388	n:830000
Cons ci ratio: 6.964973e-04	ci left: 9.741259e-01	ci right 9.748058e-01	k: 808808	n:830000
KS ci ratio: 1.003216e-01	ci left: 1.744009e-03	ci right 1.929375e-03	k: 1523	n:830000
PODXL2   830000 perm   389 sec   (2133 perm/sec)   p_kst 1.834940e-03   p_cons 9.744675e-01   p_joint 6.491566e-03

Joint ci ratio: 5.327205e-02	ci left: 6.234101e-03	ci right 6.576459e-03	k: 5379	n:840000
Cons ci ratio: 6.926151e-04	ci left: 9.741079e-01	ci right 9.747840e-01	k: 818536	n:840000
KS ci ratio: 9.983166e-02	ci left: 1.740657e-03	ci right 1.924710e-03	k: 1538	n:840000
PODXL2   840000 perm   397 sec   (2117 perm/sec)   p_kst 1.830952e-03   p_cons 9.744476e-01   p_joint 6.403571e-03

Outputting figure to mutsig2_images.part000000000134/PODXL2.7_1850_840000_0.001831_0.97445_0.0064036.png
                gene_name: PODXL2
               theta_stop: 0.100 
                    nperm: 840000 
                     p_ks: 0.0018 
        ci_ks_bounds_left: 0.0017 
       ci_ks_bounds_right: 0.0019 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.0064 
     ci_joint_bounds_left: 0.0062 
    ci_joint_bounds_right: 0.0066 

Current progress: 5 percent done.
POLE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.141455e-02	ci left: 9.164670e-01	ci right 9.270857e-01	k: 9219	n:10000
Cons ci ratio: 2.967861e-02	ci left: 6.260790e-01	ci right 6.450419e-01	k: 6356	n:10000
KS ci ratio: 2.489961e-02	ci left: 7.035183e-01	ci right 7.213578e-01	k: 7125	n:10000
POLE   10000 perm   2 sec   (4468 perm/sec)   p_kst 7.125000e-01   p_cons 6.356000e-01   p_joint 9.219000e-01

Outputting figure to mutsig2_images.part000000000134/POLE.7_7057_10000_0.7125_0.6356_0.9219.png
                gene_name: POLE
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 8 percent done.
POLA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.096209e-02	ci left: 2.254342e-01	ci right 2.421211e-01	k: 2337	n:10000
Cons ci ratio: 9.913811e-02	ci left: 1.284572e-01	ci right 1.419561e-01	k: 1351	n:10000
KS ci ratio: 5.413272e-02	ci left: 3.345866e-01	ci right 3.533044e-01	k: 3439	n:10000
POLA1   10000 perm   2 sec   (5021 perm/sec)   p_kst 3.439000e-01   p_cons 1.351000e-01   p_joint 2.337000e-01

Outputting figure to mutsig2_images.part000000000134/POLA1.6_4537_10000_0.3439_0.1351_0.2337.png
                gene_name: POLA1
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 11 percent done.
POLR2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.917035e-02	ci left: 3.789306e-01	ci right 3.981344e-01	k: 3885	n:10000
Cons ci ratio: 6.326741e-03	ci left: 9.714304e-01	ci right 9.776890e-01	k: 9747	n:10000
KS ci ratio: 6.317239e-02	ci left: 2.691358e-01	ci right 2.867938e-01	k: 2779	n:10000
POLR2B   10000 perm   2 sec   (5375 perm/sec)   p_kst 2.779000e-01   p_cons 9.747000e-01   p_joint 3.885000e-01

Outputting figure to mutsig2_images.part000000000134/POLR2B.6_3625_10000_0.2779_0.9747_0.3885.png
                gene_name: POLR2B
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 14 percent done.
POM121L12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.441001e-02	ci left: 8.744927e-01	ci right 8.872845e-01	k: 8810	n:10000
KS ci ratio: 1.301967e-02	ci left: 8.946712e-01	ci right 9.064942e-01	k: 9007	n:10000
POM121L12   10000 perm   2 sec   (6308 perm/sec)   p_kst 9.007000e-01   p_cons 8.810000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000134/POM121L12.6_895_10000_0.9007_0.881_1.png
                gene_name: POM121L12
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 16 percent done.
PON1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.811184e-02	ci left: 5.041511e-01	ci right 5.238407e-01	k: 5140	n:10000
Cons ci ratio: 4.462184e-02	ci left: 4.257520e-01	ci right 4.452856e-01	k: 4355	n:10000
KS ci ratio: 5.177165e-02	ci left: 3.548587e-01	ci right 3.738204e-01	k: 3643	n:10000
PON1   10000 perm   1 sec   (6767 perm/sec)   p_kst 3.643000e-01   p_cons 4.355000e-01   p_joint 5.140000e-01

Outputting figure to mutsig2_images.part000000000134/PON1.5_1104_10000_0.3643_0.4355_0.514.png
                gene_name: PON1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 19 percent done.
POLN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.895237e-02	ci left: 6.375415e-01	ci right 6.563728e-01	k: 6470	n:10000
Cons ci ratio: 3.906111e-02	ci left: 4.918509e-01	ci right 5.115481e-01	k: 5017	n:10000
KS ci ratio: 4.458556e-02	ci left: 4.261509e-01	ci right 4.456865e-01	k: 4359	n:10000
POLN   10000 perm   2 sec   (6000 perm/sec)   p_kst 4.359000e-01   p_cons 5.017000e-01   p_joint 6.470000e-01

Outputting figure to mutsig2_images.part000000000134/POLN.5_2799_10000_0.4359_0.5017_0.647.png
                gene_name: POLN
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 22 percent done.
POM121
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.302694e-02	ci left: 8.945686e-01	ci right 9.063969e-01	k: 9006	n:10000
Cons ci ratio: 1.539580e-02	ci left: 8.595750e-01	ci right 8.730108e-01	k: 8664	n:10000
KS ci ratio: 2.295756e-02	ci left: 7.359324e-01	ci right 7.531249e-01	k: 7446	n:10000
POM121   10000 perm   2 sec   (4850 perm/sec)   p_kst 7.446000e-01   p_cons 8.664000e-01   p_joint 9.006000e-01

Outputting figure to mutsig2_images.part000000000134/POM121.5_3003_10000_0.7446_0.8664_0.9006.png
                gene_name: POM121
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.91 

Current progress: 24 percent done.
POP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.992891e-02	ci left: 6.221590e-01	ci right 6.411643e-01	k: 6317	n:10000
Cons ci ratio: 4.819129e-02	ci left: 3.884867e-01	ci right 4.077727e-01	k: 3981	n:10000
KS ci ratio: 4.540162e-02	ci left: 4.172776e-01	ci right 4.367649e-01	k: 4270	n:10000
POP1   10000 perm   2 sec   (6166 perm/sec)   p_kst 4.270000e-01   p_cons 3.981000e-01   p_joint 6.317000e-01

Outputting figure to mutsig2_images.part000000000134/POP1.5_3135_10000_0.427_0.3981_0.6317.png
                gene_name: POP1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 27 percent done.
PNPLA8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.115161e-02	ci left: 3.604268e-01	ci right 3.794491e-01	k: 3699	n:10000
Cons ci ratio: 8.798932e-02	ci left: 1.582644e-01	ci right 1.729310e-01	k: 1655	n:10000
KS ci ratio: 4.424278e-02	ci left: 4.299405e-01	ci right 4.494947e-01	k: 4397	n:10000
PNPLA8   10000 perm   2 sec   (5992 perm/sec)   p_kst 4.397000e-01   p_cons 1.655000e-01   p_joint 3.699000e-01

Outputting figure to mutsig2_images.part000000000134/PNPLA8.4_2385_10000_0.4397_0.1655_0.3699.png
                gene_name: PNPLA8
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 30 percent done.
POLR3E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.613456e-02	ci left: 3.185017e-01	ci right 3.369988e-01	k: 3277	n:10000
Cons ci ratio: 3.660682e-02	ci left: 5.242643e-01	ci right 5.439159e-01	k: 5341	n:10000
KS ci ratio: 8.335471e-02	ci left: 1.734975e-01	ci right 1.886888e-01	k: 1810	n:10000
POLR3E   10000 perm   2 sec   (6314 perm/sec)   p_kst 1.810000e-01   p_cons 5.341000e-01   p_joint 3.277000e-01

Outputting figure to mutsig2_images.part000000000134/POLR3E.4_2207_10000_0.181_0.5341_0.3277.png
                gene_name: POLR3E
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 32 percent done.
PNPLA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.410837e-02	ci left: 4.314365e-01	ci right 4.509978e-01	k: 4412	n:10000
Cons ci ratio: 1.208232e-02	ci left: 9.076136e-01	ci right 9.187443e-01	k: 9133	n:10000
KS ci ratio: 5.956641e-02	ci left: 2.931092e-01	ci right 3.112062e-01	k: 3021	n:10000
PNPLA6   10000 perm   2 sec   (5864 perm/sec)   p_kst 3.021000e-01   p_cons 9.133000e-01   p_joint 4.412000e-01

Outputting figure to mutsig2_images.part000000000134/PNPLA6.3_4260_10000_0.3021_0.9133_0.4412.png
                gene_name: PNPLA6
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 35 percent done.
PNPLA7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.691072e-02	ci left: 1.982083e-01	ci right 2.141632e-01	k: 2061	n:10000
Cons ci ratio: 1.232929e-01	ci left: 8.611301e-02	ci right 9.752607e-02	k: 917	n:10000
KS ci ratio: 2.423247e-02	ci left: 7.146195e-01	ci right 7.322502e-01	k: 7235	n:10000
PNPLA7   10000 perm   2 sec   (6111 perm/sec)   p_kst 7.235000e-01   p_cons 9.170000e-02   p_joint 2.061000e-01

Joint ci ratio: 4.224512e-02	ci left: 2.945479e-01	ci right 3.073100e-01	k: 6018	n:20000
Cons ci ratio: 9.117641e-02	ci left: 8.072986e-02	ci right 8.849141e-02	k: 1691	n:20000
KS ci ratio: 1.711386e-02	ci left: 7.177475e-01	ci right 7.301873e-01	k: 14480	n:20000
PNPLA7   20000 perm   4 sec   (5458 perm/sec)   p_kst 7.240000e-01   p_cons 8.455000e-02   p_joint 3.009000e-01

Outputting figure to mutsig2_images.part000000000134/PNPLA7.3_4169_20000_0.724_0.08455_0.3009.png
                gene_name: PNPLA7
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.085 
      ci_cons_bounds_left: 0.081 
     ci_cons_bounds_right: 0.088 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 38 percent done.
POLDIP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.980736e-02	ci left: 2.914241e-01	ci right 3.094923e-01	k: 3004	n:10000
Cons ci ratio: 4.819809e-03	ci left: 9.826368e-01	ci right 9.874746e-01	k: 9852	n:10000
KS ci ratio: 8.176015e-02	ci left: 1.792031e-01	ci right 1.945798e-01	k: 1868	n:10000
POLDIP2   10000 perm   1 sec   (7167 perm/sec)   p_kst 1.868000e-01   p_cons 9.852000e-01   p_joint 3.004000e-01

Outputting figure to mutsig2_images.part000000000134/POLDIP2.3_1150_10000_0.1868_0.9852_0.3004.png
                gene_name: POLDIP2
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 41 percent done.
POLI
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.626217e-02	ci left: 3.175092e-01	ci right 3.359918e-01	k: 3267	n:10000
Cons ci ratio: 5.189480e-02	ci left: 3.537651e-01	ci right 3.727147e-01	k: 3632	n:10000
KS ci ratio: 5.853744e-02	ci left: 3.004459e-01	ci right 3.186652e-01	k: 3095	n:10000
POLI   10000 perm   2 sec   (6290 perm/sec)   p_kst 3.095000e-01   p_cons 3.632000e-01   p_joint 3.267000e-01

Outputting figure to mutsig2_images.part000000000134/POLI.3_2263_10000_0.3095_0.3632_0.3267.png
                gene_name: POLI
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 43 percent done.
POLK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.326853e-02	ci left: 3.418387e-01	ci right 3.606481e-01	k: 3512	n:10000
Cons ci ratio: 6.242548e-02	ci left: 2.738884e-01	ci right 2.916384e-01	k: 2827	n:10000
KS ci ratio: 8.798932e-02	ci left: 1.582644e-01	ci right 1.729310e-01	k: 1655	n:10000
POLK   10000 perm   2 sec   (6407 perm/sec)   p_kst 1.655000e-01   p_cons 2.827000e-01   p_joint 3.512000e-01

Outputting figure to mutsig2_images.part000000000134/POLK.3_2669_10000_0.1655_0.2827_0.3512.png
                gene_name: POLK
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 46 percent done.
POLR1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.149680e-02	ci left: 7.604092e-01	ci right 7.770340e-01	k: 7688	n:10000
Cons ci ratio: 2.538035e-02	ci left: 6.955495e-01	ci right 7.135312e-01	k: 7046	n:10000
KS ci ratio: 4.236267e-02	ci left: 4.513922e-01	ci right 4.710304e-01	k: 4612	n:10000
POLR1A   10000 perm   2 sec   (5488 perm/sec)   p_kst 4.612000e-01   p_cons 7.046000e-01   p_joint 7.688000e-01

Outputting figure to mutsig2_images.part000000000134/POLR1A.3_5299_10000_0.4612_0.7046_0.7688.png
                gene_name: POLR1A
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 49 percent done.
PNPLA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.211965e-01	ci left: 8.893260e-02	ci right 1.005047e-01	k: 946	n:10000
Cons ci ratio: 9.018502e-02	ci left: 1.516867e-01	ci right 1.661126e-01	k: 1588	n:10000
KS ci ratio: 2.786829e-01	ci left: 1.669424e-02	ci right 2.219075e-02	k: 193	n:10000
PNPLA1   10000 perm   1 sec   (6901 perm/sec)   p_kst 1.930000e-02   p_cons 1.588000e-01   p_joint 9.460000e-02

Joint ci ratio: 5.130325e-02	ci left: 2.201197e-01	ci right 2.317601e-01	k: 4518	n:20000
Cons ci ratio: 6.334539e-02	ci left: 1.555854e-01	ci right 1.658134e-01	k: 3213	n:20000
KS ci ratio: 1.927994e-01	ci left: 1.829524e-02	ci right 2.224596e-02	k: 404	n:20000
PNPLA1   20000 perm   3 sec   (6112 perm/sec)   p_kst 2.020000e-02   p_cons 1.606500e-01   p_joint 2.259000e-01

Joint ci ratio: 5.863393e-02	ci left: 1.258517e-01	ci right 1.334869e-01	k: 3889	n:30000
Cons ci ratio: 5.145476e-02	ci left: 1.579128e-01	ci right 1.662860e-01	k: 4862	n:30000
KS ci ratio: 1.586925e-01	ci left: 1.834962e-02	ci right 2.154430e-02	k: 597	n:30000
PNPLA1   30000 perm   5 sec   (5829 perm/sec)   p_kst 1.990000e-02   p_cons 1.620667e-01   p_joint 1.296333e-01

Joint ci ratio: 8.262309e-02	ci left: 5.106962e-02	ci right 5.549551e-02	k: 2130	n:40000
Cons ci ratio: 4.433703e-02	ci left: 1.598383e-01	ci right 1.671106e-01	k: 6538	n:40000
KS ci ratio: 1.380816e-01	ci left: 1.838475e-02	ci right 2.113559e-02	k: 789	n:40000
PNPLA1   40000 perm   7 sec   (5613 perm/sec)   p_kst 1.972500e-02   p_cons 1.634500e-01   p_joint 5.325000e-02

Joint ci ratio: 7.718092e-02	ci left: 4.716336e-02	ci right 5.096921e-02	k: 2452	n:50000
Cons ci ratio: 3.967879e-02	ci left: 1.600696e-01	ci right 1.665695e-01	k: 8165	n:50000
KS ci ratio: 1.220311e-01	ci left: 1.898479e-02	ci right 2.147135e-02	k: 1010	n:50000
PNPLA1   50000 perm   9 sec   (5475 perm/sec)   p_kst 2.020000e-02   p_cons 1.633000e-01   p_joint 4.904000e-02

Joint ci ratio: 4.902376e-02	ci left: 9.393428e-02	ci right 9.867152e-02	k: 5777	n:60000
Cons ci ratio: 3.630404e-02	ci left: 1.597382e-01	ci right 1.656611e-01	k: 9761	n:60000
KS ci ratio: 1.112212e-01	ci left: 1.915408e-02	ci right 2.142599e-02	k: 1216	n:60000
PNPLA1   60000 perm   11 sec   (5349 perm/sec)   p_kst 2.026667e-02   p_cons 1.626833e-01   p_joint 9.628333e-02

Joint ci ratio: 4.327955e-02	ci left: 1.026251e-01	ci right 1.071791e-01	k: 7342	n:70000
Cons ci ratio: 3.348995e-02	ci left: 1.609375e-01	ci right 1.664333e-01	k: 11457	n:70000
KS ci ratio: 1.033742e-01	ci left: 1.908706e-02	ci right 2.118156e-02	k: 1408	n:70000
PNPLA1   70000 perm   13 sec   (5203 perm/sec)   p_kst 2.011429e-02   p_cons 1.636714e-01   p_joint 1.048857e-01

Joint ci ratio: 3.572689e-02	ci left: 1.284583e-01	ci right 1.331436e-01	k: 10463	n:80000
Cons ci ratio: 3.131393e-02	ci left: 1.612290e-01	ci right 1.663704e-01	k: 13103	n:80000
KS ci ratio: 9.726288e-02	ci left: 1.893123e-02	ci right 2.087880e-02	k: 1591	n:80000
PNPLA1   80000 perm   16 sec   (5112 perm/sec)   p_kst 1.988750e-02   p_cons 1.637875e-01   p_joint 1.307875e-01

Outputting figure to mutsig2_images.part000000000134/PNPLA1.2_1658_80000_0.019887_0.16379_0.13079.png
                gene_name: PNPLA1
               theta_stop: 0.097 
                    nperm: 80000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.021 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 51 percent done.
PNPLA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.307811e-02	ci left: 2.697298e-01	ci right 2.873994e-01	k: 2785	n:10000
Cons ci ratio: 2.825866e-02	ci left: 6.486074e-01	ci right 6.673005e-01	k: 6580	n:10000
KS ci ratio: 1.833676e-01	ci left: 3.968114e-02	ci right 4.778736e-02	k: 436	n:10000
PNPLA5   10000 perm   1 sec   (7265 perm/sec)   p_kst 4.360000e-02   p_cons 6.580000e-01   p_joint 2.785000e-01

Joint ci ratio: 4.090366e-02	ci left: 3.082165e-01	ci right 3.211374e-01	k: 6293	n:20000
Cons ci ratio: 2.015387e-02	ci left: 6.475110e-01	ci right 6.607442e-01	k: 13083	n:20000
KS ci ratio: 1.316446e-01	ci left: 3.964911e-02	ci right 4.528489e-02	k: 848	n:20000
PNPLA5   20000 perm   3 sec   (6403 perm/sec)   p_kst 4.240000e-02   p_cons 6.541500e-01   p_joint 3.146500e-01

Joint ci ratio: 3.504606e-02	ci left: 2.891133e-01	ci right 2.994599e-01	k: 8828	n:30000
Cons ci ratio: 1.643701e-02	ci left: 6.492548e-01	ci right 6.600486e-01	k: 19640	n:30000
KS ci ratio: 1.090398e-01	ci left: 3.904373e-02	ci right 4.357898e-02	k: 1238	n:30000
PNPLA5   30000 perm   5 sec   (6079 perm/sec)   p_kst 4.126667e-02   p_cons 6.546667e-01   p_joint 2.942667e-01

Joint ci ratio: 2.459398e-02	ci left: 3.836194e-01	ci right 3.931968e-01	k: 15536	n:40000
Cons ci ratio: 1.427722e-02	ci left: 6.486377e-01	ci right 6.579901e-01	k: 26133	n:40000
KS ci ratio: 9.497260e-02	ci left: 3.890666e-02	ci right 4.281035e-02	k: 1633	n:40000
PNPLA5   40000 perm   7 sec   (5856 perm/sec)   p_kst 4.082500e-02   p_cons 6.533250e-01   p_joint 3.884000e-01

Outputting figure to mutsig2_images.part000000000134/PNPLA5.2_1326_40000_0.040825_0.65333_0.3884.png
                gene_name: PNPLA5
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.041 
        ci_ks_bounds_left: 0.039 
       ci_ks_bounds_right: 0.043 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.39 

Current progress: 54 percent done.
PNPT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.143695e-02	ci left: 4.623746e-01	ci right 4.820416e-01	k: 4722	n:10000
KS ci ratio: 6.440827e-03	ci left: 9.704780e-01	ci right 9.768420e-01	k: 9738	n:10000
PNPT1   10000 perm   2 sec   (6663 perm/sec)   p_kst 9.738000e-01   p_cons 4.722000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000134/PNPT1.2_2464_10000_0.9738_0.4722_1.png
                gene_name: PNPT1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 57 percent done.
POC1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.677804e-02	ci left: 8.379602e-01	ci right 8.522382e-01	k: 8452	n:10000
Cons ci ratio: 1.071875e-02	ci left: 9.253392e-01	ci right 9.354083e-01	k: 9305	n:10000
KS ci ratio: 3.789885e-02	ci left: 5.069520e-01	ci right 5.266382e-01	k: 5168	n:10000
POC1B   10000 perm   1 sec   (7200 perm/sec)   p_kst 5.168000e-01   p_cons 9.305000e-01   p_joint 8.452000e-01

Outputting figure to mutsig2_images.part000000000134/POC1B.2_1485_10000_0.5168_0.9305_0.8452.png
                gene_name: POC1B
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 59 percent done.
POC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.176235e-03	ci left: 9.984243e-01	ci right 9.996546e-01	k: 9992	n:10000
KS ci ratio: 2.218526e-02	ci left: 7.488743e-01	ci right 7.657756e-01	k: 7574	n:10000
POC5   10000 perm   1 sec   (7255 perm/sec)   p_kst 7.574000e-01   p_cons 9.992000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000134/POC5.2_1785_10000_0.7574_0.9992_1.png
                gene_name: POC5
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
POF1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.296881e-01	ci left: 2.504340e-02	ci right 3.163520e-02	k: 282	n:10000
Cons ci ratio: 4.509198e-01	ci left: 5.814929e-03	ci right 9.281233e-03	k: 74	n:10000
KS ci ratio: 4.917035e-02	ci left: 3.789306e-01	ci right 3.981344e-01	k: 3885	n:10000
POF1B   10000 perm   1 sec   (6946 perm/sec)   p_kst 3.885000e-01   p_cons 7.400000e-03   p_joint 2.820000e-02

Joint ci ratio: 1.754520e-01	ci left: 2.221037e-02	ci right 2.652943e-02	k: 486	n:20000
Cons ci ratio: 3.086535e-01	ci left: 6.766163e-03	ci right 9.280034e-03	k: 159	n:20000
KS ci ratio: 3.503700e-02	ci left: 3.781487e-01	ci right 3.916848e-01	k: 7698	n:20000
POF1B   20000 perm   3 sec   (6032 perm/sec)   p_kst 3.849000e-01   p_cons 7.950000e-03   p_joint 2.430000e-02

Joint ci ratio: 1.292833e-01	ci left: 2.780802e-02	ci right 3.168376e-02	k: 891	n:30000
Cons ci ratio: 2.488992e-01	ci left: 7.179429e-03	ci right 9.250843e-03	k: 245	n:30000
KS ci ratio: 2.854420e-02	ci left: 3.804524e-01	ci right 3.915030e-01	k: 11579	n:30000
POF1B   30000 perm   5 sec   (5714 perm/sec)   p_kst 3.859667e-01   p_cons 8.166667e-03   p_joint 2.970000e-02

Joint ci ratio: 1.093982e-01	ci left: 2.939614e-02	ci right 3.282238e-02	k: 1243	n:40000
Cons ci ratio: 2.152233e-01	ci left: 7.339583e-03	ci right 9.132911e-03	k: 328	n:40000
KS ci ratio: 2.472649e-02	ci left: 3.810754e-01	ci right 3.906412e-01	k: 15434	n:40000
POF1B   40000 perm   7 sec   (5507 perm/sec)   p_kst 3.858500e-01   p_cons 8.200000e-03   p_joint 3.107500e-02

Joint ci ratio: 9.717381e-02	ci left: 2.998627e-02	ci right 3.306843e-02	k: 1575	n:50000
Cons ci ratio: 1.925611e-01	ci left: 7.428193e-03	ci right 9.029691e-03	k: 410	n:50000
KS ci ratio: 2.212514e-02	ci left: 3.813903e-01	ci right 3.899430e-01	k: 19283	n:50000
POF1B   50000 perm   9 sec   (5354 perm/sec)   p_kst 3.856600e-01   p_cons 8.200000e-03   p_joint 3.150000e-02

Joint ci ratio: 1.027498e-01	ci left: 2.246512e-02	ci right 2.491459e-02	k: 1420	n:60000
Cons ci ratio: 1.783915e-01	ci left: 7.270879e-03	ci right 8.710656e-03	k: 478	n:60000
KS ci ratio: 2.018730e-02	ci left: 3.820021e-01	ci right 3.898090e-01	k: 23154	n:60000
POF1B   60000 perm   12 sec   (5141 perm/sec)   p_kst 3.859000e-01   p_cons 7.966667e-03   p_joint 2.366667e-02

Joint ci ratio: 9.329490e-02	ci left: 2.345112e-02	ci right 2.575994e-02	k: 1721	n:70000
Cons ci ratio: 1.651338e-01	ci left: 7.325982e-03	ci right 8.658144e-03	k: 558	n:70000
KS ci ratio: 1.867188e-02	ci left: 3.827477e-01	ci right 3.899760e-01	k: 27045	n:70000
POF1B   70000 perm   14 sec   (5038 perm/sec)   p_kst 3.863571e-01   p_cons 7.971429e-03   p_joint 2.458571e-02

Joint ci ratio: 8.936326e-02	ci left: 2.243688e-02	ci right 2.454787e-02	k: 1878	n:80000
Cons ci ratio: 1.556840e-01	ci left: 7.250108e-03	ci right 8.485982e-03	k: 628	n:80000
KS ci ratio: 1.749532e-02	ci left: 3.821877e-01	ci right 3.889456e-01	k: 30845	n:80000
POF1B   80000 perm   16 sec   (4920 perm/sec)   p_kst 3.855625e-01   p_cons 7.850000e-03   p_joint 2.347500e-02

Joint ci ratio: 8.227850e-02	ci left: 2.358689e-02	ci right 2.562169e-02	k: 2213	n:90000
Cons ci ratio: 1.453002e-01	ci left: 7.439049e-03	ci right 8.615214e-03	k: 721	n:90000
KS ci ratio: 1.652679e-02	ci left: 3.814642e-01	ci right 3.878322e-01	k: 34618	n:90000
POF1B   90000 perm   19 sec   (4832 perm/sec)   p_kst 3.846444e-01   p_cons 8.011111e-03   p_joint 2.458889e-02

Joint ci ratio: 5.149695e-02	ci left: 5.335783e-02	ci right 5.618807e-02	k: 5476	n:100000
Cons ci ratio: 1.377766e-01	ci left: 7.476483e-03	ci right 8.592335e-03	k: 802	n:100000
KS ci ratio: 1.568185e-02	ci left: 3.815332e-01	ci right 3.875735e-01	k: 38455	n:100000
POF1B   100000 perm   21 sec   (4754 perm/sec)   p_kst 3.845500e-01   p_cons 8.020000e-03   p_joint 5.476000e-02

Joint ci ratio: 4.932037e-02	ci left: 5.296807e-02	ci right 5.565549e-02	k: 5973	n:110000
Cons ci ratio: 1.322201e-01	ci left: 7.402876e-03	ci right 8.459680e-03	k: 871	n:110000
KS ci ratio: 1.492843e-02	ci left: 3.824225e-01	ci right 3.881835e-01	k: 42383	n:110000
POF1B   110000 perm   24 sec   (4672 perm/sec)   p_kst 3.853000e-01   p_cons 7.918182e-03   p_joint 5.430000e-02

Joint ci ratio: 7.131731e-02	ci left: 2.368178e-02	ci right 2.544130e-02	k: 2946	n:120000
Cons ci ratio: 1.260099e-01	ci left: 7.495647e-03	ci right 8.511679e-03	k: 959	n:120000
KS ci ratio: 1.428938e-02	ci left: 3.826616e-01	ci right 3.881773e-01	k: 46250	n:120000
POF1B   120000 perm   26 sec   (4599 perm/sec)   p_kst 3.854167e-01   p_cons 7.991667e-03   p_joint 2.455000e-02

Joint ci ratio: 6.052936e-02	ci left: 3.030701e-02	ci right 3.220628e-02	k: 4062	n:130000
Cons ci ratio: 1.210078e-01	ci left: 7.522895e-03	ci right 8.499242e-03	k: 1040	n:130000
KS ci ratio: 1.372751e-02	ci left: 3.828146e-01	ci right 3.881136e-01	k: 50110	n:130000
POF1B   130000 perm   29 sec   (4532 perm/sec)   p_kst 3.854615e-01   p_cons 8.000000e-03   p_joint 3.124615e-02

Joint ci ratio: 5.832439e-02	ci left: 3.034473e-02	ci right 3.217475e-02	k: 4375	n:140000
Cons ci ratio: 1.150679e-01	ci left: 7.748121e-03	ci right 8.700987e-03	k: 1150	n:140000
KS ci ratio: 1.322411e-02	ci left: 3.830563e-01	ci right 3.881627e-01	k: 53985	n:140000
POF1B   140000 perm   31 sec   (4465 perm/sec)   p_kst 3.856071e-01   p_cons 8.214286e-03   p_joint 3.125000e-02

Joint ci ratio: 6.349503e-02	ci left: 2.399261e-02	ci right 2.557250e-02	k: 3716	n:150000
Cons ci ratio: 1.114039e-01	ci left: 7.730371e-03	ci right 8.648792e-03	k: 1227	n:150000
KS ci ratio: 1.276926e-02	ci left: 3.833821e-01	ci right 3.883157e-01	k: 57877	n:150000
POF1B   150000 perm   34 sec   (4405 perm/sec)   p_kst 3.858467e-01   p_cons 8.180000e-03   p_joint 2.477333e-02

Joint ci ratio: 6.156484e-02	ci left: 2.395114e-02	ci right 2.547865e-02	k: 3953	n:160000
Cons ci ratio: 1.077779e-01	ci left: 7.757839e-03	ci right 8.647620e-03	k: 1311	n:160000
KS ci ratio: 1.237627e-02	ci left: 3.829830e-01	ci right 3.877586e-01	k: 61659	n:160000
POF1B   160000 perm   37 sec   (4342 perm/sec)   p_kst 3.853687e-01   p_cons 8.193750e-03   p_joint 2.470625e-02

Joint ci ratio: 5.969846e-02	ci left: 2.399635e-02	ci right 2.547874e-02	k: 4204	n:170000
Cons ci ratio: 1.047116e-01	ci left: 7.748125e-03	ci right 8.609951e-03	k: 1389	n:170000
KS ci ratio: 1.201252e-02	ci left: 3.828270e-01	ci right 3.874593e-01	k: 65474	n:170000
POF1B   170000 perm   40 sec   (4275 perm/sec)   p_kst 3.851412e-01   p_cons 8.170588e-03   p_joint 2.472941e-02

Joint ci ratio: 5.809247e-02	ci left: 2.395501e-02	ci right 2.539369e-02	k: 4440	n:180000
Cons ci ratio: 1.016835e-01	ci left: 7.772301e-03	ci right 8.610322e-03	k: 1473	n:180000
KS ci ratio: 1.167428e-02	ci left: 3.828844e-01	ci right 3.873860e-01	k: 69324	n:180000
POF1B   180000 perm   43 sec   (4201 perm/sec)   p_kst 3.851333e-01   p_cons 8.183333e-03   p_joint 2.466667e-02

Joint ci ratio: 5.655990e-02	ci left: 2.396002e-02	ci right 2.535980e-02	k: 4684	n:190000
Cons ci ratio: 9.912864e-02	ci left: 7.758316e-03	ci right 8.572587e-03	k: 1550	n:190000
KS ci ratio: 1.135690e-02	ci left: 3.831950e-01	ci right 3.875769e-01	k: 73223	n:190000
POF1B   190000 perm   46 sec   (4145 perm/sec)   p_kst 3.853842e-01   p_cons 8.157895e-03   p_joint 2.465263e-02

Outputting figure to mutsig2_images.part000000000134/POF1B.2_1834_190000_0.38538_0.0081579_0.024653.png
                gene_name: POF1B
               theta_stop: 0.099 
                    nperm: 190000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.0082 
      ci_cons_bounds_left: 0.0078 
     ci_cons_bounds_right: 0.0086 
                  p_joint: 0.025 
     ci_joint_bounds_left: 0.024 
    ci_joint_bounds_right: 0.025 

Current progress: 65 percent done.
POLD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.915327e-02	ci left: 1.547295e-01	ci right 1.692679e-01	k: 1619	n:10000
KS ci ratio: 5.247176e-02	ci left: 3.486956e-01	ci right 3.675871e-01	k: 3581	n:10000
POLD1   10000 perm   2 sec   (6444 perm/sec)   p_kst 3.581000e-01   p_cons 1.619000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000134/POLD1.2_3428_10000_0.3581_0.1619_1.png
                gene_name: POLD1
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
POLE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.578567e-02	ci left: 8.535544e-01	ci right 8.672349e-01	k: 8605	n:10000
Cons ci ratio: 1.155646e-02	ci left: 9.146125e-01	ci right 9.253413e-01	k: 9201	n:10000
KS ci ratio: 3.115002e-02	ci left: 6.032715e-01	ci right 6.224627e-01	k: 6129	n:10000
POLE2   10000 perm   1 sec   (7027 perm/sec)   p_kst 6.129000e-01   p_cons 9.201000e-01   p_joint 8.605000e-01

Outputting figure to mutsig2_images.part000000000134/POLE2.2_1660_10000_0.6129_0.9201_0.8605.png
                gene_name: POLE2
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 70 percent done.
POLG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.283636e-02	ci left: 5.778774e-01	ci right 5.972716e-01	k: 5876	n:10000
Cons ci ratio: 5.612182e-02	ci left: 3.186009e-01	ci right 3.370994e-01	k: 3278	n:10000
KS ci ratio: 8.606556e-02	ci left: 1.643550e-01	ci right 1.792367e-01	k: 1717	n:10000
POLG   10000 perm   2 sec   (6079 perm/sec)   p_kst 1.717000e-01   p_cons 3.278000e-01   p_joint 5.876000e-01

Outputting figure to mutsig2_images.part000000000134/POLG.2_3808_10000_0.1717_0.3278_0.5876.png
                gene_name: POLG
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 73 percent done.
POLG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.842321e-02	ci left: 8.114128e-01	ci right 8.266008e-01	k: 8191	n:10000
KS ci ratio: 2.136378e-02	ci left: 7.626362e-01	ci right 7.792057e-01	k: 7710	n:10000
POLG2   10000 perm   1 sec   (7139 perm/sec)   p_kst 7.710000e-01   p_cons 8.191000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000134/POLG2.2_1490_10000_0.771_0.8191_1.png
                gene_name: POLG2
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
POLL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.205586e-03	ci left: 9.637304e-01	ci right 9.707940e-01	k: 9674	n:10000
Cons ci ratio: 4.575590e-02	ci left: 4.134900e-01	ci right 4.329547e-01	k: 4232	n:10000
KS ci ratio: 2.182909e-02	ci left: 7.548431e-01	ci right 7.716033e-01	k: 7633	n:10000
POLL   10000 perm   1 sec   (7033 perm/sec)   p_kst 7.633000e-01   p_cons 4.232000e-01   p_joint 9.674000e-01

Outputting figure to mutsig2_images.part000000000134/POLL.2_1760_10000_0.7633_0.4232_0.9674.png
                gene_name: POLL
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 78 percent done.
POLR1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.582155e-02	ci left: 4.127924e-01	ci right 4.322528e-01	k: 4225	n:10000
Cons ci ratio: 3.514628e-02	ci left: 5.444935e-01	ci right 5.640749e-01	k: 5543	n:10000
KS ci ratio: 6.677346e-02	ci left: 2.476661e-01	ci right 2.648761e-01	k: 2562	n:10000
POLR1B   10000 perm   2 sec   (6218 perm/sec)   p_kst 2.562000e-01   p_cons 5.543000e-01   p_joint 4.225000e-01

Outputting figure to mutsig2_images.part000000000134/POLR1B.2_3468_10000_0.2562_0.5543_0.4225.png
                gene_name: POLR1B
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 81 percent done.
POLR2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.154273e-01	ci left: 9.740099e-02	ci right 1.094311e-01	k: 1033	n:10000
Cons ci ratio: 1.725017e-01	ci left: 4.485094e-02	ci right 5.341415e-02	k: 490	n:10000
KS ci ratio: 3.630636e-02	ci left: 5.283689e-01	ci right 5.480089e-01	k: 5382	n:10000
POLR2A   10000 perm   2 sec   (5309 perm/sec)   p_kst 5.382000e-01   p_cons 4.900000e-02   p_joint 1.033000e-01

Joint ci ratio: 9.386888e-02	ci left: 7.642315e-02	ci right 8.399943e-02	k: 1603	n:20000
Cons ci ratio: 1.202513e-01	ci left: 4.740861e-02	ci right 5.352292e-02	k: 1008	n:20000
KS ci ratio: 2.560456e-02	ci left: 5.326119e-01	ci right 5.464766e-01	k: 10791	n:20000
POLR2A   20000 perm   4 sec   (4719 perm/sec)   p_kst 5.395500e-01   p_cons 5.040000e-02   p_joint 8.015000e-02

Joint ci ratio: 1.691716e-02	ci left: 6.360766e-01	ci right 6.469626e-01	k: 19246	n:30000
Cons ci ratio: 7.439771e-02	ci left: 8.154016e-02	ci right 8.787387e-02	k: 2540	n:30000
KS ci ratio: 2.098728e-02	ci left: 5.319714e-01	ci right 5.432880e-01	k: 16129	n:30000
POLR2A   30000 perm   7 sec   (4525 perm/sec)   p_kst 5.376333e-01   p_cons 8.466667e-02   p_joint 6.415333e-01

Outputting figure to mutsig2_images.part000000000134/POLR2A.2_6029_30000_0.53763_0.084667_0.64153.png
                gene_name: POLR2A
               theta_stop: 0.074 
                    nperm: 30000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.085 
      ci_cons_bounds_left: 0.082 
     ci_cons_bounds_right: 0.088 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.65 

Current progress: 84 percent done.
POLR2E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.406768e-03	ci left: 9.907188e-01	ci right 9.941851e-01	k: 9926	n:10000
Cons ci ratio: 1.243716e-02	ci left: 9.027822e-01	ci right 9.141786e-01	k: 9086	n:10000
KS ci ratio: 2.400250e-02	ci left: 7.184560e-01	ci right 7.360115e-01	k: 7273	n:10000
POLR2E   10000 perm   1 sec   (7590 perm/sec)   p_kst 7.273000e-01   p_cons 9.086000e-01   p_joint 9.926000e-01

Outputting figure to mutsig2_images.part000000000134/POLR2E.2_661_10000_0.7273_0.9086_0.9926.png
                gene_name: POLR2E
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 86 percent done.
POLR3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.756954e-03	ci left: 9.584845e-01	ci right 9.660432e-01	k: 9624	n:10000
Cons ci ratio: 2.037554e-02	ci left: 7.791464e-01	ci right 7.952860e-01	k: 7873	n:10000
KS ci ratio: 5.621107e-02	ci left: 3.179062e-01	ci right 3.363946e-01	k: 3271	n:10000
POLR3B   10000 perm   2 sec   (6158 perm/sec)   p_kst 3.271000e-01   p_cons 7.873000e-01   p_joint 9.624000e-01

Outputting figure to mutsig2_images.part000000000134/POLR3B.2_3514_10000_0.3271_0.7873_0.9624.png
                gene_name: POLR3B
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 89 percent done.
POLR3D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.076154e-02	ci left: 4.705646e-01	ci right 4.902468e-01	k: 4804	n:10000
KS ci ratio: 2.039986e-02	ci left: 7.787410e-01	ci right 7.948916e-01	k: 7869	n:10000
POLR3D   10000 perm   1 sec   (7340 perm/sec)   p_kst 7.869000e-01   p_cons 4.804000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000134/POLR3D.2_1229_10000_0.7869_0.4804_1.png
                gene_name: POLR3D
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
POLR3H
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.219686e-02	ci left: 5.874096e-01	ci right 6.067338e-01	k: 5971	n:10000
Cons ci ratio: 6.087703e-02	ci left: 2.840908e-01	ci right 3.020299e-01	k: 2930	n:10000
KS ci ratio: 3.950888e-02	ci left: 4.861529e-01	ci right 5.058495e-01	k: 4960	n:10000
POLR3H   10000 perm   1 sec   (7371 perm/sec)   p_kst 4.960000e-01   p_cons 2.930000e-01   p_joint 5.971000e-01

Outputting figure to mutsig2_images.part000000000134/POLR3H.2_639_10000_0.496_0.293_0.5971.png
                gene_name: POLR3H
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 95 percent done.
POLRMT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.853727e-01	ci left: 3.882106e-02	ci right 4.684801e-02	k: 427	n:10000
Cons ci ratio: 4.420964e-01	ci left: 6.081359e-03	ci right 9.614411e-03	k: 77	n:10000
KS ci ratio: 5.406084e-02	ci left: 3.351826e-01	ci right 3.539081e-01	k: 3445	n:10000
POLRMT   10000 perm   2 sec   (5925 perm/sec)   p_kst 3.445000e-01   p_cons 7.700000e-03   p_joint 4.270000e-02

Joint ci ratio: 1.970633e-01	ci left: 1.748601e-02	ci right 2.135550e-02	k: 387	n:20000
Cons ci ratio: 3.116120e-01	ci left: 6.627764e-03	ci right 9.118513e-03	k: 156	n:20000
KS ci ratio: 3.788231e-02	ci left: 3.420430e-01	ci right 3.553011e-01	k: 6973	n:20000
POLRMT   20000 perm   4 sec   (5359 perm/sec)   p_kst 3.486500e-01   p_cons 7.800000e-03   p_joint 1.935000e-02

Joint ci ratio: 1.285426e-01	ci left: 2.813091e-02	ci right 3.202747e-02	k: 901	n:30000
Cons ci ratio: 2.597662e-01	ci left: 6.554965e-03	ci right 8.542192e-03	k: 225	n:30000
KS ci ratio: 3.115679e-02	ci left: 3.399846e-01	ci right 3.507787e-01	k: 10361	n:30000
POLRMT   30000 perm   6 sec   (5112 perm/sec)   p_kst 3.453667e-01   p_cons 7.500000e-03   p_joint 3.003333e-02

Joint ci ratio: 1.098548e-01	ci left: 2.915279e-02	ci right 3.256576e-02	k: 1233	n:40000
Cons ci ratio: 2.207002e-01	ci left: 6.961267e-03	ci right 8.711318e-03	k: 312	n:40000
KS ci ratio: 2.689182e-02	ci left: 3.422342e-01	ci right 3.515880e-01	k: 13876	n:40000
POLRMT   40000 perm   8 sec   (4922 perm/sec)   p_kst 3.469000e-01   p_cons 7.800000e-03   p_joint 3.082500e-02

Joint ci ratio: 1.025372e-01	ci left: 2.694191e-02	ci right 2.987318e-02	k: 1419	n:50000
Cons ci ratio: 1.962039e-01	ci left: 7.142690e-03	ci right 8.715247e-03	k: 395	n:50000
KS ci ratio: 2.401381e-02	ci left: 3.434648e-01	ci right 3.518329e-01	k: 17382	n:50000
POLRMT   50000 perm   10 sec   (4815 perm/sec)   p_kst 3.476400e-01   p_cons 7.900000e-03   p_joint 2.838000e-02

Joint ci ratio: 9.411626e-02	ci left: 2.677593e-02	ci right 2.943665e-02	k: 1685	n:60000
Cons ci ratio: 1.814721e-01	ci left: 7.016139e-03	ci right 8.432101e-03	k: 462	n:60000
KS ci ratio: 2.182087e-02	ci left: 3.459165e-01	ci right 3.535647e-01	k: 20984	n:60000
POLRMT   60000 perm   13 sec   (4741 perm/sec)   p_kst 3.497333e-01   p_cons 7.700000e-03   p_joint 2.808333e-02

Joint ci ratio: 8.780305e-02	ci left: 2.646877e-02	ci right 2.891345e-02	k: 1937	n:70000
Cons ci ratio: 1.697884e-01	ci left: 6.915246e-03	ci right 8.211790e-03	k: 528	n:70000
KS ci ratio: 2.011336e-02	ci left: 3.482045e-01	ci right 3.552935e-01	k: 24622	n:70000
POLRMT   70000 perm   15 sec   (4651 perm/sec)   p_kst 3.517429e-01   p_cons 7.542857e-03   p_joint 2.767143e-02

Joint ci ratio: 8.214865e-02	ci left: 2.653694e-02	ci right 2.882249e-02	k: 2213	n:80000
Cons ci ratio: 1.588983e-01	ci left: 6.949822e-03	ci right 8.161301e-03	k: 603	n:80000
KS ci ratio: 1.885647e-02	ci left: 3.474175e-01	ci right 3.540434e-01	k: 28058	n:80000
POLRMT   80000 perm   17 sec   (4573 perm/sec)   p_kst 3.507250e-01   p_cons 7.537500e-03   p_joint 2.766250e-02

Joint ci ratio: 7.747854e-02	ci left: 2.658300e-02	ci right 2.873648e-02	k: 2488	n:90000
Cons ci ratio: 1.496445e-01	ci left: 7.000182e-03	ci right 8.143012e-03	k: 680	n:90000
KS ci ratio: 1.780774e-02	ci left: 3.468499e-01	ci right 3.530931e-01	k: 31497	n:90000
POLRMT   90000 perm   20 sec   (4493 perm/sec)   p_kst 3.499667e-01   p_cons 7.555556e-03   p_joint 2.764444e-02

Joint ci ratio: 7.372991e-02	ci left: 2.647550e-02	ci right 2.851203e-02	k: 2748	n:100000
Cons ci ratio: 1.409059e-01	ci left: 7.138596e-03	ci right 8.230250e-03	k: 767	n:100000
KS ci ratio: 1.687231e-02	ci left: 3.475921e-01	ci right 3.535166e-01	k: 35055	n:100000
POLRMT   100000 perm   23 sec   (4421 perm/sec)   p_kst 3.505500e-01   p_cons 7.670000e-03   p_joint 2.748000e-02

Joint ci ratio: 7.129779e-02	ci left: 2.579104e-02	ci right 2.770675e-02	k: 2941	n:110000
Cons ci ratio: 1.331467e-01	ci left: 7.297380e-03	ci right 8.347001e-03	k: 859	n:110000
KS ci ratio: 1.608827e-02	ci left: 3.476980e-01	ci right 3.533463e-01	k: 38557	n:110000
POLRMT   110000 perm   25 sec   (4345 perm/sec)   p_kst 3.505182e-01   p_cons 7.809091e-03   p_joint 2.673636e-02

Joint ci ratio: 6.808236e-02	ci left: 2.596729e-02	ci right 2.780567e-02	k: 3225	n:120000
Cons ci ratio: 1.278346e-01	ci left: 7.277739e-03	ci right 8.279602e-03	k: 932	n:120000
KS ci ratio: 1.544750e-02	ci left: 3.465189e-01	ci right 3.519217e-01	k: 41906	n:120000
POLRMT   120000 perm   28 sec   (4280 perm/sec)   p_kst 3.492167e-01   p_cons 7.766667e-03   p_joint 2.687500e-02

Joint ci ratio: 6.508523e-02	ci left: 2.626190e-02	ci right 2.803620e-02	k: 3528	n:130000
Cons ci ratio: 1.225602e-01	ci left: 7.328943e-03	ci right 8.293206e-03	k: 1014	n:130000
KS ci ratio: 1.484758e-02	ci left: 3.464392e-01	ci right 3.516291e-01	k: 45374	n:130000
POLRMT   130000 perm   31 sec   (4214 perm/sec)   p_kst 3.490308e-01   p_cons 7.800000e-03   p_joint 2.713846e-02

Joint ci ratio: 6.260319e-02	ci left: 2.638932e-02	ci right 2.810176e-02	k: 3813	n:140000
Cons ci ratio: 1.177268e-01	ci left: 7.394362e-03	ci right 8.326195e-03	k: 1099	n:140000
KS ci ratio: 1.430150e-02	ci left: 3.467238e-01	ci right 3.517253e-01	k: 48891	n:140000
POLRMT   140000 perm   34 sec   (4153 perm/sec)   p_kst 3.492214e-01   p_cons 7.850000e-03   p_joint 2.723571e-02

Joint ci ratio: 6.049893e-02	ci left: 2.640233e-02	ci right 2.805601e-02	k: 4083	n:150000
Cons ci ratio: 1.136655e-01	ci left: 7.419310e-03	ci right 8.319869e-03	k: 1179	n:150000
KS ci ratio: 1.381925e-02	ci left: 3.467206e-01	ci right 3.515519e-01	k: 52370	n:150000
POLRMT   150000 perm   37 sec   (4085 perm/sec)   p_kst 3.491333e-01   p_cons 7.860000e-03   p_joint 2.722000e-02

Joint ci ratio: 5.705604e-02	ci left: 2.783802e-02	ci right 2.947912e-02	k: 4584	n:160000
Cons ci ratio: 1.098657e-01	ci left: 7.459861e-03	ci right 8.333112e-03	k: 1262	n:160000
KS ci ratio: 1.337058e-02	ci left: 3.471321e-01	ci right 3.518109e-01	k: 55915	n:160000
POLRMT   160000 perm   40 sec   (4030 perm/sec)   p_kst 3.494687e-01   p_cons 7.887500e-03   p_joint 2.865000e-02

Joint ci ratio: 5.377920e-02	ci left: 2.949025e-02	ci right 3.112582e-02	k: 5151	n:170000
Cons ci ratio: 1.072291e-01	ci left: 7.381557e-03	ci right 8.223594e-03	k: 1325	n:170000
KS ci ratio: 1.295724e-02	ci left: 3.476971e-01	ci right 3.522375e-01	k: 59494	n:170000
POLRMT   170000 perm   43 sec   (3975 perm/sec)   p_kst 3.499647e-01   p_cons 7.794118e-03   p_joint 3.030000e-02

Joint ci ratio: 5.325397e-02	ci left: 2.844346e-02	ci right 3.000508e-02	k: 5259	n:180000
Cons ci ratio: 1.041332e-01	ci left: 7.404172e-03	ci right 8.222910e-03	k: 1405	n:180000
KS ci ratio: 1.259105e-02	ci left: 3.478018e-01	ci right 3.522142e-01	k: 63001	n:180000
POLRMT   180000 perm   46 sec   (3920 perm/sec)   p_kst 3.500056e-01   p_cons 7.805556e-03   p_joint 2.921667e-02

Joint ci ratio: 5.183949e-02	ci left: 2.845790e-02	ci right 2.997757e-02	k: 5550	n:190000
Cons ci ratio: 1.013941e-01	ci left: 7.409327e-03	ci right 8.205800e-03	k: 1482	n:190000
KS ci ratio: 1.225156e-02	ci left: 3.479969e-01	ci right 3.522919e-01	k: 66527	n:190000
POLRMT   190000 perm   49 sec   (3864 perm/sec)   p_kst 3.501421e-01   p_cons 7.800000e-03   p_joint 2.921053e-02

Joint ci ratio: 5.211555e-02	ci left: 2.679258e-02	ci right 2.823116e-02	k: 5501	n:200000
Cons ci ratio: 9.844780e-02	ci left: 7.477628e-03	ci right 8.256737e-03	k: 1572	n:200000
KS ci ratio: 1.194324e-02	ci left: 3.479792e-01	ci right 3.521651e-01	k: 70014	n:200000
POLRMT   200000 perm   53 sec   (3808 perm/sec)   p_kst 3.500700e-01   p_cons 7.860000e-03   p_joint 2.750500e-02

Outputting figure to mutsig2_images.part000000000134/POLRMT.2_3777_200000_0.35007_0.00786_0.027505.png
                gene_name: POLRMT
               theta_stop: 0.098 
                    nperm: 200000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.0079 
      ci_cons_bounds_left: 0.0075 
     ci_cons_bounds_right: 0.0083 
                  p_joint: 0.028 
     ci_joint_bounds_left: 0.027 
    ci_joint_bounds_right: 0.028 

Current progress: 97 percent done.
POMT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.951228e-02	ci left: 6.286928e-01	ci right 6.476267e-01	k: 6382	n:10000
Cons ci ratio: 1.342088e-01	ci left: 7.330186e-02	ci right 8.394515e-02	k: 785	n:10000
KS ci ratio: 5.258607e-02	ci left: 3.477017e-01	ci right 3.665816e-01	k: 3571	n:10000
POMT1   10000 perm   2 sec   (6665 perm/sec)   p_kst 3.571000e-01   p_cons 7.850000e-02   p_joint 6.382000e-01

Joint ci ratio: 8.036964e-02	ci left: 1.020117e-01	ci right 1.106031e-01	k: 2125	n:20000
Cons ci ratio: 9.240486e-02	ci left: 7.872292e-02	ci right 8.639896e-02	k: 1650	n:20000
KS ci ratio: 3.715554e-02	ci left: 3.508540e-01	ci right 3.641875e-01	k: 7150	n:20000
POMT1   20000 perm   3 sec   (5913 perm/sec)   p_kst 3.575000e-01   p_cons 8.250000e-02   p_joint 1.062500e-01

Outputting figure to mutsig2_images.part000000000134/POMT1.2_2320_20000_0.3575_0.0825_0.10625.png
                gene_name: POMT1
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.083 
      ci_cons_bounds_left: 0.079 
     ci_cons_bounds_right: 0.086 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000134
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 134 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1640>
Subject: Job 8004429: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1640>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000135> was used as the working directory.
Started at Sun Nov 11 15:13:24 2012
Results reported at Sun Nov 11 15:21:55 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000135.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000135.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 135  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000135.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    547.29 sec.
    Max Memory :      4767 MB
    Max Swap   :      7156 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
135
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 135
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 135: processing genes 12124 - 12213
Calculating significance of each gene.
Using projection method.
12124	POP7	1
12125	POPDC2	1.511425e-01
12126	POPDC3	4.977762e-01
12127	POR	4.738766e-01
12128	PORCN	3.657879e-01
12129	POSTN	2.299761e-02
12130	POT1	2.334417e-01
12131	POTEA	4.750686e-03
12132	POTEC	7.299711e-01
12133	POTEE	9.240018e-01
12134	POTEF	3.541467e-03
12135	POTEG	2.075068e-05
12136	POTEH	2.880184e-01
12137	POTEM	1
12138	POU1F1	4.852856e-01
12139	POU2AF1	5.042516e-01
12140	POU2F1	1
12141	POU2F2	1
12142	POU2F3	6.781003e-01
12143	POU3F1	1
12144	POU3F2	3.687214e-02
12145	POU3F3	3.946110e-01
12146	POU3F4	2.000672e-01
12147	POU4F1	3.653526e-02
12148	POU4F2	2.617578e-01
12149	POU4F3	4.433348e-01
12150	POU5F1	1
12151	POU5F1B	1
12152	POU5F2	1.097652e-01
12153	POU6F1	2.721522e-01
12154	POU6F2	4.950559e-01
12155	PPA1	1
12156	PPA2	5.791084e-01
12157	PPAN	1
12158	PPAN-P2RY11	1
12159	PPAP2A	1
12160	PPAP2B	4.540490e-01
12161	PPAP2C	1
12162	PPAPDC1A	1.149797e-01
12163	PPAPDC1B	1
12164	PPAPDC2	4.833256e-01
12165	PPAPDC3	3.950736e-01
12166	PPARA	8.308887e-01
12167	PPARD	1
12168	PPARG	1
12169	PPARGC1A	1.520232e-01
12170	PPARGC1B	3.933014e-01
12171	PPAT	6.166625e-01
12172	PPBP	1
12173	PPCDC	1
12174	PPCS	6.198313e-01
12175	PPDPF	2.317970e-01
12176	PPEF1	4.464266e-02
12177	PPEF2	1.022724e-01
12178	PPFIA1	1.235791e-02
12179	PPFIA2	9.186507e-01
12180	PPFIA3	8.903575e-01
12181	PPFIA4	4.061942e-01
12182	PPFIBP1	9.559452e-01
12183	PPFIBP2	1
12184	PPHLN1	4.222347e-01
12185	PPIA	1
12186	PPIAL4E	1
12187	PPIAL4G	2.360301e-02
12188	PPIB	1.028479e-01
12189	PPIC	1
12190	PPID	1
12191	PPIE	1
12192	PPIF	1
12193	PPIG	1.706965e-01
12194	PPIH	1
12195	PPIL1	4.216341e-01
12196	PPIL2	1
12197	PPIL3	2.248198e-01
12198	PPIL4	7.054073e-01
12199	PPIL5	4.211062e-01
12200	PPIL6	5.907289e-01
12201	PPIP5K1	2.410171e-01
12202	PPIP5K2	4.337665e-01
12203	PPL	1
12204	PPM1A	4.673892e-01
12205	PPM1B	3.149614e-01
12206	PPM1D	8.818766e-01
12207	PPM1E	8.110322e-01
12208	PPM1F	6.255697e-01
12209	PPM1G	1
12210	PPM1H	1
12211	PPM1J	6.277499e-01
12212	PPM1K	2.880336e-01
12213	PPM1L	4.828662e-01
Done

Running MutSig 2:
Scatter job 135: processing genes 12124 - 12213
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
PPFIA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.572211e-02	ci left: 6.899028e-01	ci right 7.079812e-01	k: 6990	n:10000
Cons ci ratio: 9.150557e-03	ci left: 9.438819e-01	ci right 9.526547e-01	k: 9484	n:10000
KS ci ratio: 3.733377e-02	ci left: 5.144559e-01	ci right 5.341300e-01	k: 5243	n:10000
PPFIA2   10000 perm   2 sec   (4061 perm/sec)   p_kst 5.243000e-01   p_cons 9.484000e-01   p_joint 6.990000e-01

Outputting figure to mutsig2_images.part000000000135/PPFIA2.15_3894_10000_0.5243_0.9484_0.699.png
                gene_name: PPFIA2
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 2 percent done.
PPFIA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.537082e-02	ci left: 2.048126e-01	ci right 2.209550e-01	k: 2128	n:10000
Cons ci ratio: 3.585597e-02	ci left: 5.345771e-01	ci right 5.541970e-01	k: 5444	n:10000
KS ci ratio: 9.679164e-02	ci left: 1.340383e-01	ci right 1.477716e-01	k: 1408	n:10000
PPFIA1   10000 perm   2 sec   (4163 perm/sec)   p_kst 1.408000e-01   p_cons 5.444000e-01   p_joint 2.128000e-01

Outputting figure to mutsig2_images.part000000000135/PPFIA1.13_3721_10000_0.1408_0.5444_0.2128.png
                gene_name: PPFIA1
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 4 percent done.
POTEA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.820218e-02	ci left: 6.495130e-01	ci right 6.681944e-01	k: 6589	n:10000
Cons ci ratio: 5.790008e-02	ci left: 3.051071e-01	ci right 3.234012e-01	k: 3142	n:10000
KS ci ratio: 1.015329e-02	ci left: 9.322664e-01	ci right 9.418771e-01	k: 9372	n:10000
POTEA   10000 perm   2 sec   (4979 perm/sec)   p_kst 9.372000e-01   p_cons 3.142000e-01   p_joint 6.589000e-01

Outputting figure to mutsig2_images.part000000000135/POTEA.12_1545_10000_0.9372_0.3142_0.6589.png
                gene_name: POTEA
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 7 percent done.
POTEE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.376227e-01	ci left: 1.105573e-02	ci right 1.563427e-02	k: 132	n:10000
Cons ci ratio: 2.863014e-01	ci left: 1.576399e-02	ci right 2.112177e-02	k: 183	n:10000
KS ci ratio: 2.225082e-01	ci left: 2.674401e-02	ci right 3.353336e-02	k: 300	n:10000
POTEE   10000 perm   2 sec   (4456 perm/sec)   p_kst 3.000000e-02   p_cons 1.830000e-02   p_joint 1.320000e-02

Joint ci ratio: 3.277811e-01	ci left: 5.937561e-03	ci right 8.309133e-03	k: 141	n:20000
Cons ci ratio: 2.107720e-01	ci left: 1.520650e-02	ci right 1.883587e-02	k: 339	n:20000
KS ci ratio: 1.656068e-01	ci left: 2.498955e-02	ci right 2.954929e-02	k: 544	n:20000
POTEE   20000 perm   5 sec   (4057 perm/sec)   p_kst 2.720000e-02   p_cons 1.695000e-02   p_joint 7.050000e-03

Joint ci ratio: 1.717537e-01	ci left: 1.559936e-02	ci right 1.856189e-02	k: 511	n:30000
Cons ci ratio: 1.717537e-01	ci left: 1.559936e-02	ci right 1.856189e-02	k: 511	n:30000
KS ci ratio: 1.359467e-01	ci left: 2.513068e-02	ci right 2.882836e-02	k: 808	n:30000
POTEE   30000 perm   8 sec   (3916 perm/sec)   p_kst 2.693333e-02   p_cons 1.703333e-02   p_joint 1.703333e-02

Joint ci ratio: 1.675454e-01	ci left: 1.236803e-02	ci right 1.465340e-02	k: 539	n:40000
Cons ci ratio: 1.488176e-01	ci left: 1.577991e-02	ci right 1.834090e-02	k: 681	n:40000
KS ci ratio: 1.169928e-01	ci left: 2.570066e-02	ci right 2.891846e-02	k: 1091	n:40000
POTEE   40000 perm   11 sec   (3808 perm/sec)   p_kst 2.727500e-02   p_cons 1.702500e-02   p_joint 1.347500e-02

Joint ci ratio: 1.432269e-01	ci left: 1.370194e-02	ci right 1.583494e-02	k: 737	n:50000
Cons ci ratio: 1.295574e-01	ci left: 1.681397e-02	ci right 1.916246e-02	k: 898	n:50000
KS ci ratio: 1.046418e-01	ci left: 2.586966e-02	ci right 2.874558e-02	k: 1364	n:50000
POTEE   50000 perm   13 sec   (3732 perm/sec)   p_kst 2.728000e-02   p_cons 1.796000e-02   p_joint 1.474000e-02

Joint ci ratio: 1.330226e-01	ci left: 1.331688e-02	ci right 1.523053e-02	k: 855	n:60000
Cons ci ratio: 1.182582e-01	ci left: 1.691885e-02	ci right 1.906147e-02	k: 1078	n:60000
KS ci ratio: 9.334997e-02	ci left: 2.721566e-02	ci right 2.989686e-02	k: 1712	n:60000
POTEE   60000 perm   16 sec   (3699 perm/sec)   p_kst 2.853333e-02   p_cons 1.796667e-02   p_joint 1.425000e-02

Joint ci ratio: 1.279634e-01	ci left: 1.238144e-02	ci right 1.408783e-02	k: 925	n:70000
Cons ci ratio: 1.092578e-01	ci left: 1.706968e-02	ci right 1.905627e-02	k: 1263	n:70000
KS ci ratio: 8.634758e-02	ci left: 2.736369e-02	ci right 2.984702e-02	k: 2001	n:70000
POTEE   70000 perm   19 sec   (3661 perm/sec)   p_kst 2.858571e-02   p_cons 1.804286e-02   p_joint 1.321429e-02

Joint ci ratio: 1.233083e-01	ci left: 1.170522e-02	ci right 1.325543e-02	k: 997	n:80000
Cons ci ratio: 1.031720e-01	ci left: 1.680974e-02	ci right 1.865048e-02	k: 1417	n:80000
KS ci ratio: 8.058971e-02	ci left: 2.756615e-02	ci right 2.989319e-02	k: 2297	n:80000
POTEE   80000 perm   22 sec   (3619 perm/sec)   p_kst 2.871250e-02   p_cons 1.771250e-02   p_joint 1.246250e-02

Joint ci ratio: 1.219209e-01	ci left: 1.066278e-02	ci right 1.205787e-02	k: 1021	n:90000
Cons ci ratio: 9.800114e-02	ci left: 1.660998e-02	ci right 1.833243e-02	k: 1571	n:90000
KS ci ratio: 7.596941e-02	ci left: 2.764067e-02	ci right 2.983429e-02	k: 2585	n:90000
POTEE   90000 perm   25 sec   (3578 perm/sec)   p_kst 2.872222e-02   p_cons 1.745556e-02   p_joint 1.134444e-02

Joint ci ratio: 1.069743e-01	ci left: 1.254071e-02	ci right 1.396773e-02	k: 1324	n:100000
Cons ci ratio: 9.293600e-02	ci left: 1.666700e-02	ci right 1.830116e-02	k: 1747	n:100000
KS ci ratio: 7.310337e-02	ci left: 2.692728e-02	ci right 2.898022e-02	k: 2794	n:100000
POTEE   100000 perm   28 sec   (3532 perm/sec)   p_kst 2.794000e-02   p_cons 1.747000e-02   p_joint 1.324000e-02

Joint ci ratio: 1.023704e-01	ci left: 1.248069e-02	ci right 1.383607e-02	k: 1446	n:110000
Cons ci ratio: 8.811790e-02	ci left: 1.689339e-02	ci right 1.845946e-02	k: 1943	n:110000
KS ci ratio: 6.984757e-02	ci left: 2.686321e-02	ci right 2.881634e-02	k: 3061	n:110000
POTEE   110000 perm   32 sec   (3488 perm/sec)   p_kst 2.782727e-02   p_cons 1.766364e-02   p_joint 1.314545e-02

Joint ci ratio: 1.023200e-01	ci left: 1.146468e-02	ci right 1.270906e-02	k: 1449	n:120000
Cons ci ratio: 8.456414e-02	ci left: 1.684721e-02	ci right 1.834290e-02	k: 2110	n:120000
KS ci ratio: 6.700163e-02	ci left: 2.680332e-02	ci right 2.866960e-02	k: 3327	n:120000
POTEE   120000 perm   35 sec   (3445 perm/sec)   p_kst 2.772500e-02   p_cons 1.758333e-02   p_joint 1.207500e-02

Joint ci ratio: 9.845933e-02	ci left: 1.145269e-02	ci right 1.264615e-02	k: 1565	n:130000
Cons ci ratio: 8.093944e-02	ci left: 1.700523e-02	ci right 1.844717e-02	k: 2303	n:130000
KS ci ratio: 6.210919e-02	ci left: 2.880658e-02	ci right 3.066063e-02	k: 3864	n:130000
POTEE   130000 perm   38 sec   (3403 perm/sec)   p_kst 2.972308e-02   p_cons 1.771538e-02   p_joint 1.203846e-02

Outputting figure to mutsig2_images.part000000000135/POTEE.12_3288_130000_0.029723_0.017715_0.012038.png
                gene_name: POTEE
               theta_stop: 0.098 
                    nperm: 130000 
                     p_ks: 0.030 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.031 
                   p_cons: 0.018 
      ci_cons_bounds_left: 0.017 
     ci_cons_bounds_right: 0.018 
                  p_joint: 0.012 
     ci_joint_bounds_left: 0.011 
    ci_joint_bounds_right: 0.013 

Current progress: 9 percent done.
POTEF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.210554e-01	ci left: 8.912712e-02	ci right 1.007101e-01	k: 948	n:10000
Cons ci ratio: 5.667384e-02	ci left: 3.143335e-01	ci right 3.327693e-01	k: 3235	n:10000
KS ci ratio: 1.434278e-01	ci left: 6.449503e-02	ci right 7.455749e-02	k: 694	n:10000
POTEF   10000 perm   2 sec   (4645 perm/sec)   p_kst 6.940000e-02   p_cons 3.235000e-01   p_joint 9.480000e-02

Joint ci ratio: 1.128455e-01	ci left: 5.368046e-02	ci right 6.014911e-02	k: 1137	n:20000
Cons ci ratio: 4.165032e-02	ci left: 3.005115e-01	ci right 3.133446e-01	k: 6138	n:20000
KS ci ratio: 9.797943e-02	ci left: 7.045809e-02	ci right 7.776631e-02	k: 1481	n:20000
POTEF   20000 perm   5 sec   (4229 perm/sec)   p_kst 7.405000e-02   p_cons 3.069000e-01   p_joint 5.685000e-02

Joint ci ratio: 8.567143e-02	ci left: 6.243190e-02	ci right 6.805266e-02	k: 1956	n:30000
Cons ci ratio: 3.412362e-02	ci left: 3.002569e-01	ci right 3.107141e-01	k: 9164	n:30000
KS ci ratio: 8.084807e-02	ci left: 6.972131e-02	ci right 7.562844e-02	k: 2179	n:30000
POTEF   30000 perm   7 sec   (4072 perm/sec)   p_kst 7.263333e-02   p_cons 3.054667e-01   p_joint 6.520000e-02

Outputting figure to mutsig2_images.part000000000135/POTEF.12_3288_30000_0.072633_0.30547_0.0652.png
                gene_name: POTEF
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.073 
        ci_ks_bounds_left: 0.070 
       ci_ks_bounds_right: 0.076 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.065 
     ci_joint_bounds_left: 0.062 
    ci_joint_bounds_right: 0.068 

Current progress: 11 percent done.
POTEG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.430079e-02	ci left: 5.565186e-01	ci right 5.760428e-01	k: 5663	n:10000
Cons ci ratio: 8.809519e-03	ci left: 9.476267e-01	ci right 9.561076e-01	k: 9520	n:10000
KS ci ratio: 5.333872e-02	ci left: 3.412425e-01	ci right 3.600446e-01	k: 3506	n:10000
POTEG   10000 perm   2 sec   (5402 perm/sec)   p_kst 3.506000e-01   p_cons 9.520000e-01   p_joint 5.663000e-01

Outputting figure to mutsig2_images.part000000000135/POTEG.11_1567_10000_0.3506_0.952_0.5663.png
                gene_name: POTEG
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 13 percent done.
POSTN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.584875e-02	ci left: 5.346773e-01	ci right 5.542968e-01	k: 5445	n:10000
Cons ci ratio: 2.942928e-02	ci left: 6.299998e-01	ci right 6.489189e-01	k: 6395	n:10000
KS ci ratio: 4.701526e-02	ci left: 4.003376e-01	ci right 4.197148e-01	k: 4100	n:10000
POSTN   10000 perm   2 sec   (5156 perm/sec)   p_kst 4.100000e-01   p_cons 6.395000e-01   p_joint 5.445000e-01

Outputting figure to mutsig2_images.part000000000135/POSTN.8_2603_10000_0.41_0.6395_0.5445.png
                gene_name: POSTN
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 16 percent done.
PPARGC1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.806165e-02	ci left: 3.039169e-01	ci right 3.221921e-01	k: 3130	n:10000
Cons ci ratio: 1.283610e-01	ci left: 7.979957e-02	ci right 9.084340e-02	k: 852	n:10000
KS ci ratio: 3.215674e-02	ci left: 5.880118e-01	ci right 6.073313e-01	k: 5977	n:10000
PPARGC1A   10000 perm   2 sec   (5451 perm/sec)   p_kst 5.977000e-01   p_cons 8.520000e-02   p_joint 3.130000e-01

Joint ci ratio: 5.029760e-02	ci left: 2.270562e-01	ci right 2.388215e-01	k: 4658	n:20000
Cons ci ratio: 9.102956e-02	ci left: 8.097465e-02	ci right 8.874654e-02	k: 1696	n:20000
KS ci ratio: 2.259321e-02	ci left: 5.939735e-01	ci right 6.075972e-01	k: 12016	n:20000
PPARGC1A   20000 perm   4 sec   (4648 perm/sec)   p_kst 6.008000e-01   p_cons 8.480000e-02   p_joint 2.329000e-01

Outputting figure to mutsig2_images.part000000000135/PPARGC1A.6_2449_20000_0.6008_0.0848_0.2329.png
                gene_name: PPARGC1A
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.085 
      ci_cons_bounds_left: 0.081 
     ci_cons_bounds_right: 0.089 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 18 percent done.
PPEF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.065070e-02	ci left: 3.650016e-01	ci right 3.840715e-01	k: 3745	n:10000
Cons ci ratio: 9.495584e-02	ci left: 1.386431e-01	ci right 1.525641e-01	k: 1455	n:10000
KS ci ratio: 6.784775e-03	ci left: 9.675208e-01	ci right 9.742012e-01	k: 9710	n:10000
PPEF1   10000 perm   2 sec   (5142 perm/sec)   p_kst 9.710000e-01   p_cons 1.455000e-01   p_joint 3.745000e-01

Outputting figure to mutsig2_images.part000000000135/PPEF1.6_2026_10000_0.971_0.1455_0.3745.png
                gene_name: PPEF1
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.38 

Current progress: 20 percent done.
PPEF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.536584e-01	ci left: 5.638760e-02	ci right 6.587006e-02	k: 610	n:10000
Cons ci ratio: 3.751414e-01	ci left: 8.776964e-03	ci right 1.291541e-02	k: 107	n:10000
KS ci ratio: 3.791403e-02	ci left: 5.067519e-01	ci right 5.264384e-01	k: 5166	n:10000
PPEF2   10000 perm   2 sec   (5463 perm/sec)   p_kst 5.166000e-01   p_cons 1.070000e-02   p_joint 6.100000e-02

Joint ci ratio: 1.107954e-01	ci left: 5.562767e-02	ci right 6.220129e-02	k: 1177	n:20000
Cons ci ratio: 2.665217e-01	ci left: 9.273887e-03	ci right 1.217100e-02	k: 213	n:20000
KS ci ratio: 2.732026e-02	ci left: 5.002456e-01	ci right 5.141523e-01	k: 10144	n:20000
PPEF2   20000 perm   4 sec   (4911 perm/sec)   p_kst 5.072000e-01   p_cons 1.065000e-02   p_joint 5.885000e-02

Joint ci ratio: 1.164992e-01	ci left: 3.424427e-02	ci right 3.851279e-02	k: 1090	n:30000
Cons ci ratio: 2.172740e-01	ci left: 9.566664e-03	ci right 1.192952e-02	k: 321	n:30000
KS ci ratio: 2.278389e-02	ci left: 4.909594e-01	ci right 5.023079e-01	k: 14899	n:30000
PPEF2   30000 perm   6 sec   (4691 perm/sec)   p_kst 4.966333e-01   p_cons 1.070000e-02   p_joint 3.633333e-02

Joint ci ratio: 1.202591e-01	ci left: 2.431688e-02	ci right 2.745246e-02	k: 1034	n:40000
Cons ci ratio: 1.923610e-01	ci left: 9.286121e-03	ci right 1.128593e-02	k: 410	n:40000
KS ci ratio: 1.971228e-02	ci left: 4.922130e-01	ci right 5.020374e-01	k: 19885	n:40000
PPEF2   40000 perm   9 sec   (4554 perm/sec)   p_kst 4.971250e-01   p_cons 1.025000e-02   p_joint 2.585000e-02

Joint ci ratio: 9.720566e-02	ci left: 2.996674e-02	ci right 3.304796e-02	k: 1574	n:50000
Cons ci ratio: 1.718423e-01	ci left: 9.414392e-03	ci right 1.120315e-02	k: 514	n:50000
KS ci ratio: 1.765056e-02	ci left: 4.921878e-01	ci right 5.009726e-01	k: 24829	n:50000
PPEF2   50000 perm   11 sec   (4422 perm/sec)   p_kst 4.965800e-01   p_cons 1.028000e-02   p_joint 3.148000e-02

Joint ci ratio: 8.361870e-02	ci left: 3.385393e-02	ci right 3.682457e-02	k: 2119	n:60000
Cons ci ratio: 1.552287e-01	ci left: 9.699815e-03	ci right 1.134805e-02	k: 630	n:60000
KS ci ratio: 1.562390e-02	ci left: 5.079749e-01	ci right 5.159906e-01	k: 30719	n:60000
PPEF2   60000 perm   14 sec   (4332 perm/sec)   p_kst 5.119833e-01   p_cons 1.050000e-02   p_joint 3.531667e-02

Joint ci ratio: 6.981180e-02	ci left: 4.159335e-02	ci right 4.461610e-02	k: 3016	n:70000
Cons ci ratio: 1.415125e-01	ci left: 1.007507e-02	ci right 1.162302e-02	k: 758	n:70000
KS ci ratio: 1.452041e-02	ci left: 5.063607e-01	ci right 5.137813e-01	k: 35705	n:70000
PPEF2   70000 perm   17 sec   (4241 perm/sec)   p_kst 5.100714e-01   p_cons 1.082857e-02   p_joint 4.308571e-02

Joint ci ratio: 7.294832e-02	ci left: 3.356521e-02	ci right 3.611867e-02	k: 2786	n:80000
Cons ci ratio: 1.332633e-01	ci left: 9.986500e-03	ci right 1.142432e-02	k: 855	n:80000
KS ci ratio: 1.363529e-02	ci left: 5.046667e-01	ci right 5.116077e-01	k: 40651	n:80000
PPEF2   80000 perm   19 sec   (4168 perm/sec)   p_kst 5.081375e-01   p_cons 1.068750e-02   p_joint 3.482500e-02

Joint ci ratio: 6.401301e-02	ci left: 3.871811e-02	ci right 4.128943e-02	k: 3599	n:90000
Cons ci ratio: 1.255102e-01	ci left: 1.004884e-02	ci right 1.140519e-02	k: 964	n:90000
KS ci ratio: 1.282849e-02	ci left: 5.059170e-01	ci right 5.124602e-01	k: 45827	n:90000
PPEF2   90000 perm   22 sec   (4100 perm/sec)   p_kst 5.091889e-01   p_cons 1.071111e-02   p_joint 3.998889e-02

Joint ci ratio: 6.241328e-02	ci left: 3.676429e-02	ci right 3.914260e-02	k: 3794	n:100000
Cons ci ratio: 1.189139e-01	ci left: 1.011036e-02	ci right 1.139825e-02	k: 1074	n:100000
KS ci ratio: 1.216603e-02	ci left: 5.062563e-01	ci right 5.124631e-01	k: 50936	n:100000
PPEF2   100000 perm   25 sec   (4035 perm/sec)   p_kst 5.093600e-01   p_cons 1.074000e-02   p_joint 3.794000e-02

Joint ci ratio: 5.729432e-02	ci left: 3.964748e-02	ci right 4.199499e-02	k: 4489	n:110000
Cons ci ratio: 1.132108e-01	ci left: 1.017106e-02	ci right 1.140039e-02	k: 1185	n:110000
KS ci ratio: 1.159683e-02	ci left: 5.065319e-01	ci right 5.124494e-01	k: 56044	n:110000
PPEF2   110000 perm   28 sec   (3970 perm/sec)   p_kst 5.094909e-01   p_cons 1.077273e-02   p_joint 4.080909e-02

Joint ci ratio: 5.285688e-02	ci left: 4.266543e-02	ci right 4.499001e-02	k: 5258	n:120000
Cons ci ratio: 1.084682e-01	ci left: 1.018232e-02	ci right 1.135816e-02	k: 1291	n:120000
KS ci ratio: 1.109960e-02	ci left: 5.068172e-01	ci right 5.124823e-01	k: 61158	n:120000
PPEF2   120000 perm   31 sec   (3908 perm/sec)   p_kst 5.096500e-01   p_cons 1.075833e-02   p_joint 4.381667e-02

Joint ci ratio: 4.936051e-02	ci left: 4.512599e-02	ci right 4.741738e-02	k: 6014	n:130000
Cons ci ratio: 1.040502e-01	ci left: 1.023773e-02	ci right 1.136887e-02	k: 1403	n:130000
KS ci ratio: 1.066375e-02	ci left: 5.069477e-01	ci right 5.123903e-01	k: 66257	n:130000
PPEF2   130000 perm   34 sec   (3851 perm/sec)   p_kst 5.096692e-01   p_cons 1.079231e-02   p_joint 4.626154e-02

Joint ci ratio: 4.304337e-02	ci left: 5.472348e-02	ci right 5.713781e-02	k: 7829	n:140000
Cons ci ratio: 9.208453e-02	ci left: 1.218978e-02	ci right 1.337338e-02	k: 1788	n:140000
KS ci ratio: 1.028889e-02	ci left: 5.064133e-01	ci right 5.116578e-01	k: 71265	n:140000
PPEF2   140000 perm   37 sec   (3795 perm/sec)   p_kst 5.090357e-01   p_cons 1.277143e-02   p_joint 5.592143e-02

Outputting figure to mutsig2_images.part000000000135/PPEF2.6_2326_140000_0.50904_0.012771_0.055921.png
                gene_name: PPEF2
               theta_stop: 0.092 
                    nperm: 140000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.013 
      ci_cons_bounds_left: 0.012 
     ci_cons_bounds_right: 0.013 
                  p_joint: 0.056 
     ci_joint_bounds_left: 0.055 
    ci_joint_bounds_right: 0.057 

Current progress: 22 percent done.
PPFIA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.710561e-02	ci left: 6.672307e-01	ci right 6.856665e-01	k: 6765	n:10000
Cons ci ratio: 5.935524e-02	ci left: 2.945961e-01	ci right 3.127184e-01	k: 3036	n:10000
KS ci ratio: 2.782048e-02	ci left: 6.556521e-01	ci right 6.742517e-01	k: 6650	n:10000
PPFIA3   10000 perm   2 sec   (5163 perm/sec)   p_kst 6.650000e-01   p_cons 3.036000e-01   p_joint 6.765000e-01

Outputting figure to mutsig2_images.part000000000135/PPFIA3.6_3697_10000_0.665_0.3036_0.6765.png
                gene_name: PPFIA3
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 24 percent done.
PPIP5K2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.255939e-02	ci left: 5.819908e-01	ci right 6.013557e-01	k: 5917	n:10000
KS ci ratio: 2.147867e-02	ci left: 7.607128e-01	ci right 7.773302e-01	k: 7691	n:10000
PPIP5K2   10000 perm   2 sec   (4754 perm/sec)   p_kst 7.691000e-01   p_cons 5.917000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000135/PPIP5K2.6_3785_10000_0.7691_0.5917_1.png
                gene_name: PPIP5K2
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 27 percent done.
PPARGC1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.626559e-02	ci left: 4.081086e-01	ci right 4.275393e-01	k: 4178	n:10000
Cons ci ratio: 6.628658e-02	ci left: 2.504348e-01	ci right 2.677057e-01	k: 2590	n:10000
KS ci ratio: 2.708085e-02	ci left: 6.676335e-01	ci right 6.860634e-01	k: 6769	n:10000
PPARGC1B   10000 perm   2 sec   (5202 perm/sec)   p_kst 6.769000e-01   p_cons 2.590000e-01   p_joint 4.178000e-01

Outputting figure to mutsig2_images.part000000000135/PPARGC1B.5_3127_10000_0.6769_0.259_0.4178.png
                gene_name: PPARGC1B
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 29 percent done.
PPFIA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.086341e-01	ci left: 1.089077e-01	ci right 1.215175e-01	k: 1151	n:10000
Cons ci ratio: 1.315918e-01	ci left: 7.611299e-02	ci right 8.693227e-02	k: 814	n:10000
KS ci ratio: 9.875836e-02	ci left: 1.293382e-01	ci right 1.428746e-01	k: 1360	n:10000
PPFIA4   10000 perm   2 sec   (5525 perm/sec)   p_kst 1.360000e-01   p_cons 8.140000e-02   p_joint 1.151000e-01

Joint ci ratio: 8.702652e-02	ci left: 8.807791e-02	ci right 9.614113e-02	k: 1841	n:20000
Cons ci ratio: 9.231348e-02	ci left: 7.886975e-02	ci right 8.655209e-02	k: 1653	n:20000
KS ci ratio: 7.016245e-02	ci left: 1.302431e-01	ci right 1.397633e-01	k: 2699	n:20000
PPFIA4   20000 perm   4 sec   (4951 perm/sec)   p_kst 1.349500e-01   p_cons 8.265000e-02   p_joint 9.205000e-02

Outputting figure to mutsig2_images.part000000000135/PPFIA4.5_2174_20000_0.13495_0.08265_0.09205.png
                gene_name: PPFIA4
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.083 
      ci_cons_bounds_left: 0.079 
     ci_cons_bounds_right: 0.087 
                  p_joint: 0.092 
     ci_joint_bounds_left: 0.088 
    ci_joint_bounds_right: 0.096 

Current progress: 31 percent done.
PPIG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.303765e-01	ci left: 7.747081e-02	ci right 8.837361e-02	k: 828	n:10000
Cons ci ratio: 1.156144e-01	ci left: 9.710875e-02	ci right 1.091236e-01	k: 1030	n:10000
KS ci ratio: 8.369350e-02	ci left: 1.723174e-01	ci right 1.874696e-01	k: 1798	n:10000
PPIG   10000 perm   2 sec   (5491 perm/sec)   p_kst 1.798000e-01   p_cons 1.030000e-01   p_joint 8.280000e-02

Joint ci ratio: 8.447442e-02	ci left: 9.307925e-02	ci right 1.013383e-01	k: 1943	n:20000
Cons ci ratio: 8.572558e-02	ci left: 9.057813e-02	ci right 9.874015e-02	k: 1892	n:20000
KS ci ratio: 5.955478e-02	ci left: 1.727208e-01	ci right 1.833729e-01	k: 3560	n:20000
PPIG   20000 perm   4 sec   (4923 perm/sec)   p_kst 1.780000e-01   p_cons 9.460000e-02   p_joint 9.715000e-02

Outputting figure to mutsig2_images.part000000000135/PPIG.5_2313_20000_0.178_0.0946_0.09715.png
                gene_name: PPIG
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.095 
      ci_cons_bounds_left: 0.091 
     ci_cons_bounds_right: 0.099 
                  p_joint: 0.097 
     ci_joint_bounds_left: 0.093 
    ci_joint_bounds_right: 0.10 

Current progress: 33 percent done.
POPDC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.076154e-02	ci left: 4.705646e-01	ci right 4.902468e-01	k: 4804	n:10000
KS ci ratio: 2.214905e-02	ci left: 7.494812e-01	ci right 7.663683e-01	k: 7580	n:10000
POPDC3   10000 perm   2 sec   (6192 perm/sec)   p_kst 7.580000e-01   p_cons 4.804000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000135/POPDC3.4_888_10000_0.758_0.4804_1.png
                gene_name: POPDC3
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 36 percent done.
POT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.751436e-01	ci left: 4.350916e-02	ci right 5.195681e-02	k: 476	n:10000
Cons ci ratio: 6.163475e-02	ci left: 2.790384e-01	ci right 2.968853e-01	k: 2879	n:10000
KS ci ratio: 4.045706e-01	ci left: 7.422760e-03	ci right 1.127121e-02	k: 92	n:10000
POT1   10000 perm   2 sec   (5669 perm/sec)   p_kst 9.200000e-03   p_cons 2.879000e-01   p_joint 4.760000e-02

Joint ci ratio: 1.743543e-01	ci left: 2.249752e-02	ci right 2.684217e-02	k: 492	n:20000
Cons ci ratio: 4.545038e-02	ci left: 2.648983e-01	ci right 2.772684e-01	k: 5421	n:20000
KS ci ratio: 2.764887e-01	ci left: 8.574499e-03	ci right 1.137073e-02	k: 198	n:20000
POT1   20000 perm   4 sec   (5071 perm/sec)   p_kst 9.900000e-03   p_cons 2.710500e-01   p_joint 2.460000e-02

Joint ci ratio: 1.507789e-01	ci left: 2.036990e-02	ci right 2.372355e-02	k: 660	n:30000
Cons ci ratio: 3.720743e-02	ci left: 2.650151e-01	ci right 2.750961e-01	k: 8101	n:30000
KS ci ratio: 2.271026e-01	ci left: 8.716294e-03	ci right 1.098015e-02	k: 294	n:30000
POT1   30000 perm   6 sec   (4851 perm/sec)   p_kst 9.800000e-03   p_cons 2.700333e-01   p_joint 2.200000e-02

Joint ci ratio: 1.466451e-01	ci left: 1.626171e-02	ci right 1.885900e-02	k: 701	n:40000
Cons ci ratio: 3.137147e-02	ci left: 2.763250e-01	ci right 2.851569e-01	k: 11229	n:40000
KS ci ratio: 1.977807e-01	ci left: 8.762746e-03	ci right 1.070942e-02	k: 388	n:40000
POT1   40000 perm   9 sec   (4701 perm/sec)   p_kst 9.700000e-03   p_cons 2.807250e-01   p_joint 1.752500e-02

Joint ci ratio: 1.188886e-01	ci left: 2.001347e-02	ci right 2.256253e-02	k: 1063	n:50000
Cons ci ratio: 2.818160e-02	ci left: 2.750517e-01	ci right 2.829339e-01	k: 13949	n:50000
KS ci ratio: 1.773156e-01	ci left: 8.821240e-03	ci right 1.055640e-02	k: 483	n:50000
POT1   50000 perm   11 sec   (4581 perm/sec)   p_kst 9.660000e-03   p_cons 2.789800e-01   p_joint 2.126000e-02

Joint ci ratio: 1.093112e-01	ci left: 1.983515e-02	ci right 2.214484e-02	k: 1258	n:60000
Cons ci ratio: 2.567617e-02	ci left: 2.761773e-01	ci right 2.833774e-01	k: 16786	n:60000
KS ci ratio: 1.621204e-01	ci left: 8.867236e-03	ci right 1.044740e-02	k: 578	n:60000
POT1   60000 perm   13 sec   (4481 perm/sec)   p_kst 9.633333e-03   p_cons 2.797667e-01   p_joint 2.096667e-02

Joint ci ratio: 8.553727e-02	ci left: 2.788121e-02	ci right 3.038659e-02	k: 2038	n:70000
Cons ci ratio: 2.381105e-02	ci left: 2.757792e-01	ci right 2.824391e-01	k: 19537	n:70000
KS ci ratio: 1.502630e-01	ci left: 8.904657e-03	ci right 1.036499e-02	k: 673	n:70000
POT1   70000 perm   16 sec   (4391 perm/sec)   p_kst 9.614286e-03   p_cons 2.791000e-01   p_joint 2.911429e-02

Joint ci ratio: 8.447270e-02	ci left: 2.510411e-02	ci right 2.733043e-02	k: 2096	n:80000
Cons ci ratio: 2.224083e-02	ci left: 2.765790e-01	ci right 2.828120e-01	k: 22375	n:80000
KS ci ratio: 1.404926e-01	ci left: 8.960024e-03	ci right 1.032589e-02	k: 770	n:80000
POT1   80000 perm   19 sec   (4311 perm/sec)   p_kst 9.625000e-03   p_cons 2.796875e-01   p_joint 2.620000e-02

Joint ci ratio: 9.451182e-02	ci left: 1.786838e-02	ci right 1.965171e-02	k: 1687	n:90000
Cons ci ratio: 2.096365e-02	ci left: 2.768577e-01	ci right 2.827342e-01	k: 25181	n:90000
KS ci ratio: 1.320262e-01	ci left: 9.059220e-03	ci right 1.035046e-02	k: 872	n:90000
POT1   90000 perm   21 sec   (4235 perm/sec)   p_kst 9.688889e-03   p_cons 2.797889e-01   p_joint 1.874444e-02

Joint ci ratio: 9.179348e-02	ci left: 1.708723e-02	ci right 1.874090e-02	k: 1790	n:100000
Cons ci ratio: 1.984503e-02	ci left: 2.778765e-01	ci right 2.834562e-01	k: 28066	n:100000
KS ci ratio: 1.245400e-01	ci left: 9.198699e-03	ci right 1.042998e-02	k: 980	n:100000
POT1   100000 perm   24 sec   (4168 perm/sec)   p_kst 9.800000e-03   p_cons 2.806600e-01   p_joint 1.790000e-02

Joint ci ratio: 9.386049e-02	ci left: 1.487593e-02	ci right 1.634977e-02	k: 1716	n:110000
Cons ci ratio: 1.891200e-02	ci left: 2.782090e-01	ci right 2.835298e-01	k: 30895	n:110000
KS ci ratio: 1.196489e-01	ci left: 9.085112e-03	ci right 1.025005e-02	k: 1062	n:110000
POT1   110000 perm   27 sec   (4103 perm/sec)   p_kst 9.654545e-03   p_cons 2.808636e-01   p_joint 1.560000e-02

Joint ci ratio: 9.749860e-02	ci left: 1.264320e-02	ci right 1.394715e-02	k: 1594	n:120000
Cons ci ratio: 1.811872e-02	ci left: 2.780591e-01	ci right 2.831515e-01	k: 33672	n:120000
KS ci ratio: 1.142886e-01	ci left: 9.153175e-03	ci right 1.027071e-02	k: 1164	n:120000
POT1   120000 perm   30 sec   (4039 perm/sec)   p_kst 9.700000e-03   p_cons 2.806000e-01   p_joint 1.328333e-02

Joint ci ratio: 9.527675e-02	ci left: 1.224105e-02	ci right 1.347313e-02	k: 1670	n:130000
Cons ci ratio: 1.741025e-02	ci left: 2.781050e-01	ci right 2.829971e-01	k: 36471	n:130000
KS ci ratio: 1.097209e-01	ci left: 9.189301e-03	ci right 1.026351e-02	k: 1263	n:130000
POT1   130000 perm   33 sec   (3978 perm/sec)   p_kst 9.715385e-03   p_cons 2.805462e-01   p_joint 1.284615e-02

Joint ci ratio: 1.001649e-01	ci left: 1.027909e-02	ci right 1.136989e-02	k: 1514	n:140000
Cons ci ratio: 1.679909e-02	ci left: 2.776633e-01	ci right 2.823744e-01	k: 39202	n:140000
KS ci ratio: 1.056213e-01	ci left: 9.227984e-03	ci right 1.026390e-02	k: 1363	n:140000
POT1   140000 perm   36 sec   (3916 perm/sec)   p_kst 9.735714e-03   p_cons 2.800143e-01   p_joint 1.081429e-02

Joint ci ratio: 8.290192e-02	ci left: 1.407743e-02	ci right 1.530143e-02	k: 2202	n:150000
Cons ci ratio: 1.622067e-02	ci left: 2.779615e-01	ci right 2.825137e-01	k: 42035	n:150000
KS ci ratio: 1.034219e-01	ci left: 8.995780e-03	ci right 9.983320e-03	k: 1422	n:150000
POT1   150000 perm   39 sec   (3856 perm/sec)   p_kst 9.480000e-03   p_cons 2.802333e-01   p_joint 1.468000e-02

Joint ci ratio: 6.870942e-02	ci left: 1.925200e-02	ci right 2.062797e-02	k: 3189	n:160000
Cons ci ratio: 1.568601e-02	ci left: 2.785365e-01	ci right 2.829464e-01	k: 44918	n:160000
KS ci ratio: 1.003003e-01	ci left: 8.981711e-03	ci right 9.936192e-03	k: 1512	n:160000
POT1   160000 perm   42 sec   (3799 perm/sec)   p_kst 9.450000e-03   p_cons 2.807375e-01   p_joint 1.993125e-02

Joint ci ratio: 7.985558e-02	ci left: 1.341802e-02	ci right 1.453982e-02	k: 2375	n:170000
Cons ci ratio: 1.571053e-02	ci left: 2.659425e-01	ci right 2.701595e-01	k: 45568	n:170000
KS ci ratio: 9.720071e-02	ci left: 9.015616e-03	ci right 9.942404e-03	k: 1610	n:170000
POT1   170000 perm   45 sec   (3743 perm/sec)   p_kst 9.470588e-03   p_cons 2.680471e-01   p_joint 1.397059e-02

Outputting figure to mutsig2_images.part000000000135/POT1.4_1965_170000_0.0094706_0.26805_0.013971.png
                gene_name: POT1
               theta_stop: 0.097 
                    nperm: 170000 
                     p_ks: 0.0095 
        ci_ks_bounds_left: 0.0090 
       ci_ks_bounds_right: 0.0099 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.014 
     ci_joint_bounds_left: 0.013 
    ci_joint_bounds_right: 0.015 

Current progress: 38 percent done.
POU3F2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.447174e-02	ci left: 8.735722e-01	ci right 8.864055e-01	k: 8801	n:10000
Cons ci ratio: 2.806431e-02	ci left: 6.517269e-01	ci right 6.703792e-01	k: 6611	n:10000
KS ci ratio: 2.425669e-02	ci left: 7.142157e-01	ci right 7.318542e-01	k: 7231	n:10000
POU3F2   10000 perm   2 sec   (5934 perm/sec)   p_kst 7.231000e-01   p_cons 6.611000e-01   p_joint 8.801000e-01

Outputting figure to mutsig2_images.part000000000135/POU3F2.4_1336_10000_0.7231_0.6611_0.8801.png
                gene_name: POU3F2
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.89 

Current progress: 40 percent done.
POPDC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.957627e-02	ci left: 3.750495e-01	ci right 3.942177e-01	k: 3846	n:10000
Cons ci ratio: 4.611379e-02	ci left: 4.097030e-01	ci right 4.291440e-01	k: 4194	n:10000
KS ci ratio: 7.270890e-02	ci left: 2.169452e-01	ci right 2.334152e-01	k: 2251	n:10000
POPDC2   10000 perm   2 sec   (6232 perm/sec)   p_kst 2.251000e-01   p_cons 4.194000e-01   p_joint 3.846000e-01

Outputting figure to mutsig2_images.part000000000135/POPDC2.3_1111_10000_0.2251_0.4194_0.3846.png
                gene_name: POPDC2
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.39 

Current progress: 42 percent done.
POR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.494051e-02	ci left: 5.473990e-01	ci right 5.669676e-01	k: 5572	n:10000
KS ci ratio: 2.598517e-02	ci left: 6.855679e-01	ci right 7.037185e-01	k: 6947	n:10000
POR   10000 perm   2 sec   (6004 perm/sec)   p_kst 6.947000e-01   p_cons 5.572000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000135/POR.3_2103_10000_0.6947_0.5572_1.png
                gene_name: POR
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 44 percent done.
POTEH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.868280e-02	ci left: 2.371885e-01	ci right 2.541599e-01	k: 2456	n:10000
Cons ci ratio: 3.816527e-02	ci left: 5.034510e-01	ci right 5.231413e-01	k: 5133	n:10000
KS ci ratio: 2.166412e-01	ci left: 2.825837e-02	ci right 3.521793e-02	k: 316	n:10000
POTEH   10000 perm   2 sec   (6168 perm/sec)   p_kst 3.160000e-02   p_cons 5.133000e-01   p_joint 2.456000e-01

Joint ci ratio: 6.927520e-02	ci left: 1.331986e-01	ci right 1.428069e-01	k: 2759	n:20000
Cons ci ratio: 2.864886e-02	ci left: 4.765261e-01	ci right 4.904271e-01	k: 9669	n:19999
KS ci ratio: 1.461933e-01	ci left: 3.215814e-02	ci right 3.727829e-02	k: 693	n:20000
POTEH   20000 perm   4 sec   (5451 perm/sec)   p_kst 3.465000e-02   p_cons 4.834742e-01   p_joint 1.379500e-01

Joint ci ratio: 6.011669e-02	ci left: 1.203891e-01	ci right 1.278839e-01	k: 3723	n:30000
Cons ci ratio: 2.335116e-02	ci left: 4.786793e-01	ci right 4.900227e-01	k: 14530	n:29999
KS ci ratio: 1.214993e-01	ci left: 3.149246e-02	ci right 3.559852e-02	k: 1005	n:30000
POTEH   30000 perm   6 sec   (5199 perm/sec)   p_kst 3.350000e-02   p_cons 4.843495e-01   p_joint 1.241000e-01

Joint ci ratio: 6.093827e-02	ci left: 9.088595e-02	ci right 9.662318e-02	k: 3749	n:40000
Cons ci ratio: 2.028420e-02	ci left: 4.779289e-01	ci right 4.877478e-01	k: 19313	n:39999
KS ci ratio: 1.047514e-01	ci left: 3.205045e-02	ci right 3.561765e-02	k: 1352	n:40000
POTEH   40000 perm   8 sec   (5032 perm/sec)   p_kst 3.380000e-02   p_cons 4.828371e-01   p_joint 9.372500e-02

Joint ci ratio: 5.422775e-02	ci left: 9.204834e-02	ci right 9.719883e-02	k: 4730	n:50000
Cons ci ratio: 1.818132e-02	ci left: 4.774002e-01	ci right 4.861797e-01	k: 24088	n:49997
KS ci ratio: 9.315959e-02	ci left: 3.260453e-02	ci right 3.580985e-02	k: 1709	n:50000
POTEH   50000 perm   10 sec   (4902 perm/sec)   p_kst 3.418000e-02   p_cons 4.817889e-01   p_joint 9.460000e-02

Outputting figure to mutsig2_images.part000000000135/POTEH.3_1678_50000_0.03418_0.48179_0.0946.png
                gene_name: POTEH
               theta_stop: 0.093 
                    nperm: 50000 
                     p_ks: 0.034 
        ci_ks_bounds_left: 0.033 
       ci_ks_bounds_right: 0.036 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.095 
     ci_joint_bounds_left: 0.092 
    ci_joint_bounds_right: 0.097 

Current progress: 47 percent done.
POU2F1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.143295e-02	ci left: 5.989536e-01	ci right 6.181831e-01	k: 6086	n:10000
Cons ci ratio: 6.733862e-02	ci left: 2.445023e-01	ci right 2.616417e-01	k: 2530	n:10000
KS ci ratio: 8.585952e-03	ci left: 9.500226e-01	ci right 9.583102e-01	k: 9543	n:10000
POU2F1   10000 perm   2 sec   (5890 perm/sec)   p_kst 9.543000e-01   p_cons 2.530000e-01   p_joint 6.086000e-01

Outputting figure to mutsig2_images.part000000000135/POU2F1.3_2292_10000_0.9543_0.253_0.6086.png
                gene_name: POU2F1
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 49 percent done.
POU4F1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.992814e-02	ci left: 2.306682e-01	ci right 2.474840e-01	k: 2390	n:10000
Cons ci ratio: 1.149936e-01	ci left: 9.808295e-02	ci right 1.101488e-01	k: 1040	n:10000
KS ci ratio: 3.578376e-02	ci left: 5.355786e-01	ci right 5.551949e-01	k: 5454	n:10000
POU4F1   10000 perm   2 sec   (6276 perm/sec)   p_kst 5.454000e-01   p_cons 1.040000e-01   p_joint 2.390000e-01

Joint ci ratio: 3.730156e-02	ci left: 3.490617e-01	ci right 3.623803e-01	k: 7114	n:20000
Cons ci ratio: 8.122727e-02	ci left: 1.000476e-01	ci right 1.085678e-01	k: 2085	n:20000
KS ci ratio: 2.565097e-02	ci left: 5.317110e-01	ci right 5.455777e-01	k: 10773	n:20000
POU4F1   20000 perm   4 sec   (5583 perm/sec)   p_kst 5.386500e-01   p_cons 1.042500e-01   p_joint 3.557000e-01

Outputting figure to mutsig2_images.part000000000135/POU4F1.3_1268_20000_0.53865_0.10425_0.3557.png
                gene_name: POU4F1
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 51 percent done.
POU4F2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.274890e-02	ci left: 8.984685e-01	ci right 9.100947e-01	k: 9044	n:10000
Cons ci ratio: 3.778521e-02	ci left: 5.084526e-01	ci right 5.281367e-01	k: 5183	n:10000
KS ci ratio: 2.478420e-02	ci left: 7.054353e-01	ci right 7.232397e-01	k: 7144	n:10000
POU4F2   10000 perm   1 sec   (6908 perm/sec)   p_kst 7.144000e-01   p_cons 5.183000e-01   p_joint 9.044000e-01

Outputting figure to mutsig2_images.part000000000135/POU4F2.3_1238_10000_0.7144_0.5183_0.9044.png
                gene_name: POU4F2
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 53 percent done.
POU5F2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.019010e-01	ci left: 1.222933e-01	ci right 1.355237e-01	k: 1288	n:10000
Cons ci ratio: 1.093240e-02	ci left: 9.226548e-01	ci right 9.328943e-01	k: 9279	n:10000
KS ci ratio: 1.795348e-01	ci left: 4.140268e-02	ci right 4.966468e-02	k: 454	n:10000
POU5F2   10000 perm   2 sec   (6438 perm/sec)   p_kst 4.540000e-02   p_cons 9.279000e-01   p_joint 1.288000e-01

Joint ci ratio: 6.780037e-02	ci left: 1.383233e-01	ci right 1.480806e-01	k: 2863	n:20000
Cons ci ratio: 7.280364e-03	ci left: 9.320069e-01	ci right 9.388659e-01	k: 18710	n:20000
KS ci ratio: 1.289706e-01	ci left: 4.129596e-02	ci right 4.703752e-02	k: 882	n:20000
POU5F2   20000 perm   3 sec   (5718 perm/sec)   p_kst 4.410000e-02   p_cons 9.355000e-01   p_joint 1.431500e-01

Joint ci ratio: 6.227432e-02	ci left: 1.130217e-01	ci right 1.203194e-01	k: 3499	n:30000
Cons ci ratio: 5.971675e-03	ci left: 9.320833e-01	ci right 9.376988e-01	k: 28048	n:30000
KS ci ratio: 1.070718e-01	ci left: 4.047235e-02	ci right 4.508339e-02	k: 1282	n:30000
POU5F2   30000 perm   6 sec   (5447 perm/sec)   p_kst 4.273333e-02   p_cons 9.349333e-01   p_joint 1.166333e-01

Joint ci ratio: 5.197513e-02	ci left: 1.212547e-01	ci right 1.277499e-01	k: 4979	n:40000
Cons ci ratio: 5.171733e-03	ci left: 9.324636e-01	ci right 9.373231e-01	k: 37397	n:40000
KS ci ratio: 9.266124e-02	ci left: 4.083721e-02	ci right 4.482950e-02	k: 1712	n:40000
POU5F2   40000 perm   8 sec   (5271 perm/sec)   p_kst 4.280000e-02   p_cons 9.349250e-01   p_joint 1.244750e-01

Outputting figure to mutsig2_images.part000000000135/POU5F2.3_991_40000_0.0428_0.93493_0.12448.png
                gene_name: POU5F2
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.043 
        ci_ks_bounds_left: 0.041 
       ci_ks_bounds_right: 0.045 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 56 percent done.
POU6F2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.032889e-02	ci left: 6.159285e-01	ci right 6.349984e-01	k: 6255	n:10000
Cons ci ratio: 1.128281e-01	ci left: 1.015915e-01	ci right 1.138381e-01	k: 1076	n:10000
KS ci ratio: 4.775176e-02	ci left: 3.928679e-01	ci right 4.121890e-01	k: 4025	n:10000
POU6F2   10000 perm   2 sec   (5877 perm/sec)   p_kst 4.025000e-01   p_cons 1.076000e-01   p_joint 6.255000e-01

Joint ci ratio: 2.709710e-02	ci left: 5.043460e-01	ci right 5.182507e-01	k: 10226	n:20000
Cons ci ratio: 7.978301e-02	ci left: 1.033868e-01	ci right 1.120276e-01	k: 2153	n:20000
KS ci ratio: 3.377232e-02	ci left: 3.956432e-01	ci right 4.092851e-01	k: 8049	n:20000
POU6F2   20000 perm   4 sec   (5251 perm/sec)   p_kst 4.024500e-01   p_cons 1.076500e-01   p_joint 5.113000e-01

Outputting figure to mutsig2_images.part000000000135/POU6F2.3_2116_20000_0.40245_0.10765_0.5113.png
                gene_name: POU6F2
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 58 percent done.
PPAPDC1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.712477e-02	ci left: 5.172579e-01	ci right 5.369263e-01	k: 5271	n:10000
Cons ci ratio: 1.229451e-02	ci left: 9.047348e-01	ci right 9.160249e-01	k: 9105	n:10000
KS ci ratio: 4.137882e-02	ci left: 4.630737e-01	ci right 4.827421e-01	k: 4729	n:10000
PPAPDC1A   10000 perm   2 sec   (6544 perm/sec)   p_kst 4.729000e-01   p_cons 9.105000e-01   p_joint 5.271000e-01

Outputting figure to mutsig2_images.part000000000135/PPAPDC1A.3_844_10000_0.4729_0.9105_0.5271.png
                gene_name: PPAPDC1A
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 60 percent done.
PPIAL4G
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.838341e-03	ci left: 9.473144e-01	ci right 9.558201e-01	k: 9517	n:10000
KS ci ratio: 3.030300e-02	ci left: 6.163304e-01	ci right 6.353963e-01	k: 6259	n:10000
PPIAL4G   10000 perm   2 sec   (6570 perm/sec)   p_kst 6.259000e-01   p_cons 9.517000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000135/PPIAL4G.3_499_10000_0.6259_0.9517_1.png
                gene_name: PPIAL4G
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
PPIP5K1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.251487e-02	ci left: 1.451135e-01	ci right 1.592898e-01	k: 1521	n:10000
Cons ci ratio: 1.398082e-02	ci left: 8.808366e-01	ci right 8.933369e-01	k: 8872	n:10000
KS ci ratio: 1.666916e-01	ci left: 4.801742e-02	ci right 5.684561e-02	k: 523	n:10000
PPIP5K1   10000 perm   2 sec   (5055 perm/sec)   p_kst 5.230000e-02   p_cons 8.872000e-01   p_joint 1.521000e-01

Joint ci ratio: 1.052128e-01	ci left: 6.147550e-02	ci right 6.835165e-02	k: 1297	n:20000
Cons ci ratio: 9.822949e-03	ci left: 8.840054e-01	ci right 8.927813e-01	k: 17769	n:20000
KS ci ratio: 1.229707e-01	ci left: 4.536948e-02	ci right 5.136270e-02	k: 966	n:20000
PPIP5K1   20000 perm   4 sec   (4559 perm/sec)   p_kst 4.830000e-02   p_cons 8.884500e-01   p_joint 6.485000e-02

Joint ci ratio: 6.956968e-02	ci left: 9.236089e-02	ci right 9.905097e-02	k: 2870	n:30000
Cons ci ratio: 8.012663e-03	ci left: 8.850192e-01	ci right 8.921721e-01	k: 26659	n:30000
KS ci ratio: 9.776107e-02	ci left: 4.837465e-02	ci right 5.337945e-02	k: 1525	n:30000
PPIP5K1   30000 perm   7 sec   (4367 perm/sec)   p_kst 5.083333e-02   p_cons 8.886333e-01   p_joint 9.566667e-02

Outputting figure to mutsig2_images.part000000000135/PPIP5K1.3_4542_30000_0.050833_0.88863_0.095667.png
                gene_name: PPIP5K1
               theta_stop: 0.098 
                    nperm: 30000 
                     p_ks: 0.051 
        ci_ks_bounds_left: 0.048 
       ci_ks_bounds_right: 0.053 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.096 
     ci_joint_bounds_left: 0.092 
    ci_joint_bounds_right: 0.099 

Current progress: 64 percent done.
PPM1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.101528e-01	ci left: 1.061753e-01	ci right 1.186515e-01	k: 1123	n:10000
Cons ci ratio: 6.521613e-02	ci left: 2.566662e-01	ci right 2.740706e-01	k: 2653	n:10000
KS ci ratio: 1.373633e-01	ci left: 7.010558e-02	ci right 8.054343e-02	k: 752	n:10000
PPM1B   10000 perm   2 sec   (5458 perm/sec)   p_kst 7.520000e-02   p_cons 2.653000e-01   p_joint 1.123000e-01

Joint ci ratio: 7.771605e-02	ci left: 1.084472e-01	ci right 1.172657e-01	k: 2256	n:20000
Cons ci ratio: 4.644855e-02	ci left: 2.564616e-01	ci right 2.687075e-01	k: 5251	n:20000
KS ci ratio: 9.755352e-02	ci left: 7.104451e-02	ci right 7.837971e-02	k: 1493	n:20000
PPM1B   20000 perm   4 sec   (5111 perm/sec)   p_kst 7.465000e-02   p_cons 2.625500e-01   p_joint 1.128000e-01

Outputting figure to mutsig2_images.part000000000135/PPM1B.3_1527_20000_0.07465_0.26255_0.1128.png
                gene_name: PPM1B
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.075 
        ci_ks_bounds_left: 0.071 
       ci_ks_bounds_right: 0.078 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 67 percent done.
PORCN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.292156e-02	ci left: 2.707198e-01	ci right 2.884088e-01	k: 2795	n:10000
KS ci ratio: 6.915738e-03	ci left: 9.663613e-01	ci right 9.731614e-01	k: 9699	n:10000
PORCN   10000 perm   2 sec   (6147 perm/sec)   p_kst 9.699000e-01   p_cons 2.795000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000135/PORCN.2_1442_10000_0.9699_0.2795_1.png
                gene_name: PORCN
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 69 percent done.
POU3F4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.386189e-02	ci left: 8.825771e-01	ci right 8.949954e-01	k: 8889	n:10000
Cons ci ratio: 2.752138e-02	ci left: 6.604841e-01	ci right 6.790169e-01	k: 6698	n:10000
KS ci ratio: 5.490924e-02	ci left: 3.282306e-01	ci right 3.468641e-01	k: 3375	n:10000
POU3F4   10000 perm   1 sec   (6721 perm/sec)   p_kst 3.375000e-01   p_cons 6.698000e-01   p_joint 8.889000e-01

Outputting figure to mutsig2_images.part000000000135/POU3F4.2_1090_10000_0.3375_0.6698_0.8889.png
                gene_name: POU3F4
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 71 percent done.
POU4F3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.314893e-02	ci left: 5.732631e-01	ci right 5.926885e-01	k: 5830	n:10000
KS ci ratio: 8.526847e-03	ci left: 9.506481e-01	ci right 9.588844e-01	k: 9549	n:10000
POU4F3   10000 perm   2 sec   (6500 perm/sec)   p_kst 9.549000e-01   p_cons 5.830000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000135/POU4F3.2_1025_10000_0.9549_0.583_1.png
                gene_name: POU4F3
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
POU6F1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.609721e-02	ci left: 2.515227e-01	ci right 2.688172e-01	k: 2601	n:10000
KS ci ratio: 1.097680e-01	ci left: 1.068582e-01	ci right 1.193681e-01	k: 1130	n:10000
POU6F1   10000 perm   2 sec   (6612 perm/sec)   p_kst 1.130000e-01   p_cons 2.601000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 5.755843e-02	ci left: 1.828035e-01	ci right 1.936873e-01	k: 3764	n:20000
KS ci ratio: 7.731122e-02	ci left: 1.094793e-01	ci right 1.183333e-01	k: 2277	n:20000
POU6F1   20000 perm   3 sec   (5842 perm/sec)   p_kst 1.138500e-01   p_cons 1.882000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000135/POU6F1.2_926_20000_0.11385_0.1882_1.png
                gene_name: POU6F1
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
PPAP2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.353708e-02	ci left: 7.262324e-01	ci right 7.436305e-01	k: 7350	n:10000
KS ci ratio: 7.032931e-03	ci left: 9.653082e-01	ci right 9.722151e-01	k: 9689	n:10000
PPAP2B   10000 perm   1 sec   (7057 perm/sec)   p_kst 9.689000e-01   p_cons 7.350000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000135/PPAP2B.2_960_10000_0.9689_0.735_1.png
                gene_name: PPAP2B
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
PPAPDC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.375648e-02	ci left: 8.841132e-01	ci right 8.964584e-01	k: 8904	n:10000
Cons ci ratio: 2.747163e-02	ci left: 6.612896e-01	ci right 6.798110e-01	k: 6706	n:10000
KS ci ratio: 3.084891e-02	ci left: 6.078915e-01	ci right 6.270400e-01	k: 6175	n:10000
PPAPDC3   10000 perm   1 sec   (6894 perm/sec)   p_kst 6.175000e-01   p_cons 6.706000e-01   p_joint 8.904000e-01

Outputting figure to mutsig2_images.part000000000135/PPAPDC3.2_824_10000_0.6175_0.6706_0.8904.png
                gene_name: PPAPDC3
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.90 

Current progress: 80 percent done.
PPARD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.326741e-03	ci left: 9.714304e-01	ci right 9.776890e-01	k: 9747	n:10000
Cons ci ratio: 3.942995e-02	ci left: 4.871524e-01	ci right 5.068493e-01	k: 4970	n:10000
KS ci ratio: 3.752127e-02	ci left: 5.119543e-01	ci right 5.316330e-01	k: 5218	n:10000
PPARD   10000 perm   2 sec   (6481 perm/sec)   p_kst 5.218000e-01   p_cons 4.970000e-01   p_joint 9.747000e-01

Outputting figure to mutsig2_images.part000000000135/PPARD.2_1375_10000_0.5218_0.497_0.9747.png
                gene_name: PPARD
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 82 percent done.
PPAT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.852906e-02	ci left: 6.442810e-01	ci right 6.630294e-01	k: 6537	n:10000
Cons ci ratio: 1.078481e-02	ci left: 9.245130e-01	ci right 9.346350e-01	k: 9297	n:10000
KS ci ratio: 3.129460e-02	ci left: 6.010623e-01	ci right 6.202732e-01	k: 6107	n:10000
PPAT   10000 perm   2 sec   (6622 perm/sec)   p_kst 6.107000e-01   p_cons 9.297000e-01   p_joint 6.537000e-01

Outputting figure to mutsig2_images.part000000000135/PPAT.2_1598_10000_0.6107_0.9297_0.6537.png
                gene_name: PPAT
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 84 percent done.
PPHLN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.624069e-02	ci left: 5.292700e-01	ci right 5.489072e-01	k: 5391	n:10000
Cons ci ratio: 2.721712e-02	ci left: 6.654179e-01	ci right 6.838802e-01	k: 6747	n:10000
KS ci ratio: 5.438552e-02	ci left: 3.325008e-01	ci right 3.511914e-01	k: 3418	n:10000
PPHLN1   10000 perm   2 sec   (6417 perm/sec)   p_kst 3.418000e-01   p_cons 6.747000e-01   p_joint 5.391000e-01

Outputting figure to mutsig2_images.part000000000135/PPHLN1.2_1635_10000_0.3418_0.6747_0.5391.png
                gene_name: PPHLN1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 87 percent done.
PPIB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.456068e-02	ci left: 8.722429e-01	ci right 8.851355e-01	k: 8788	n:10000
Cons ci ratio: 1.299497e-01	ci left: 7.795586e-02	ci right 8.888826e-02	k: 833	n:10000
KS ci ratio: 2.306014e-02	ci left: 7.342143e-01	ci right 7.514440e-01	k: 7429	n:10000
PPIB   10000 perm   1 sec   (6982 perm/sec)   p_kst 7.429000e-01   p_cons 8.330000e-02   p_joint 8.788000e-01

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 9.255771e-02	ci left: 7.847822e-02	ci right 8.614373e-02	k: 1645	n:20000
KS ci ratio: 1.640007e-02	ci left: 7.345666e-01	ci right 7.467634e-01	k: 14814	n:20000
PPIB   20000 perm   3 sec   (6135 perm/sec)   p_kst 7.407000e-01   p_cons 8.225000e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000135/PPIB.2_671_20000_0.7407_0.08225_1.png
                gene_name: PPIB
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.082 
      ci_cons_bounds_left: 0.078 
     ci_cons_bounds_right: 0.086 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
PPIL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.738916e-02	ci left: 8.281881e-01	ci right 8.428159e-01	k: 8356	n:10000
KS ci ratio: 1.705275e-02	ci left: 8.335820e-01	ci right 8.480189e-01	k: 8409	n:10000
PPIL5   10000 perm   2 sec   (6633 perm/sec)   p_kst 8.409000e-01   p_cons 8.356000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000135/PPIL5.2_1261_10000_0.8409_0.8356_1.png
                gene_name: PPIL5
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
PPM1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.764585e-02	ci left: 3.069917e-01	ci right 3.253155e-01	k: 3161	n:10000
KS ci ratio: 3.265380e-02	ci left: 5.805862e-01	ci right 5.999612e-01	k: 5903	n:10000
PPM1A   10000 perm   2 sec   (6652 perm/sec)   p_kst 5.903000e-01   p_cons 3.161000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000135/PPM1A.2_1415_10000_0.5903_0.3161_1.png
                gene_name: PPM1A
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
PPM1E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.647003e-02	ci left: 6.776064e-01	ci right 6.958847e-01	k: 6868	n:10000
Cons ci ratio: 4.567166e-02	ci left: 4.143870e-01	ci right 4.338572e-01	k: 4241	n:10000
KS ci ratio: 3.075105e-02	ci left: 6.093982e-01	ci right 6.285324e-01	k: 6190	n:10000
PPM1E   10000 perm   2 sec   (6098 perm/sec)   p_kst 6.190000e-01   p_cons 4.241000e-01   p_joint 6.868000e-01

Outputting figure to mutsig2_images.part000000000135/PPM1E.2_2296_10000_0.619_0.4241_0.6868.png
                gene_name: PPM1E
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 96 percent done.
PPM1K
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.692637e-01	ci left: 4.657748e-02	ci right 5.528648e-02	k: 508	n:10000
Cons ci ratio: 1.162440e-01	ci left: 9.613473e-02	ci right 1.080982e-01	k: 1020	n:10000
KS ci ratio: 1.072707e-01	ci left: 1.114460e-01	ci right 1.241776e-01	k: 1177	n:10000
PPM1K   10000 perm   1 sec   (6724 perm/sec)   p_kst 1.177000e-01   p_cons 1.020000e-01   p_joint 5.080000e-02

Joint ci ratio: 6.223004e-02	ci left: 1.603734e-01	ci right 1.707240e-01	k: 3310	n:20000
Cons ci ratio: 8.301585e-02	ci left: 9.612099e-02	ci right 1.044956e-01	k: 2005	n:20000
KS ci ratio: 7.634997e-02	ci left: 1.119863e-01	ci right 1.209255e-01	k: 2328	n:20000
PPM1K   20000 perm   3 sec   (5927 perm/sec)   p_kst 1.164000e-01   p_cons 1.002500e-01   p_joint 1.655000e-01

Outputting figure to mutsig2_images.part000000000135/PPM1K.2_1143_20000_0.1164_0.10025_0.1655.png
                gene_name: PPM1K
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.096 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 98 percent done.
PPM1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.854117e-02	ci left: 8.094827e-01	ci right 8.247321e-01	k: 8172	n:10000
Cons ci ratio: 1.036624e-01	ci left: 1.185779e-01	ci right 1.316413e-01	k: 1250	n:10000
KS ci ratio: 3.199653e-02	ci left: 5.904206e-01	ci right 6.097211e-01	k: 6001	n:10000
PPM1L   10000 perm   2 sec   (5834 perm/sec)   p_kst 6.001000e-01   p_cons 1.250000e-01   p_joint 8.172000e-01

Joint ci ratio: 1.302236e-02	ci left: 8.137950e-01	ci right 8.245120e-01	k: 16384	n:20000
Cons ci ratio: 7.207218e-02	ci left: 1.241867e-01	ci right 1.335215e-01	k: 2576	n:20000
KS ci ratio: 2.270877e-02	ci left: 5.915170e-01	ci right 6.051544e-01	k: 11967	n:20000
PPM1L   20000 perm   4 sec   (5519 perm/sec)   p_kst 5.983500e-01   p_cons 1.288000e-01   p_joint 8.192000e-01

Outputting figure to mutsig2_images.part000000000135/PPM1L.2_1099_20000_0.59835_0.1288_0.8192.png
                gene_name: PPM1L
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000135
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 135 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1532>
Subject: Job 8004433: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1532>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000136> was used as the working directory.
Started at Sun Nov 11 15:13:54 2012
Results reported at Sun Nov 11 15:22:33 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000136.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000136.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 136  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000136.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    647.26 sec.
    Max Memory :      4752 MB
    Max Swap   :      7054 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
136
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 136
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 136: processing genes 12214 - 12304
Calculating significance of each gene.
Using projection method.
12214	PPM1M	1
12215	PPM1N	1
12216	PPME1	1
12217	PPOX	8.677294e-01
12218	PPP1CA	1
12219	PPP1CB	1
12220	PPP1CC	1
12221	PPP1R10	1
12222	PPP1R11	1
12223	PPP1R12A	1
12224	PPP1R12B	6.707295e-01
12225	PPP1R12C	3.560743e-01
12226	PPP1R13B	8.998606e-01
12227	PPP1R13L	8.207432e-01
12228	PPP1R14A	1.682827e-01
12229	PPP1R14B	1
12230	PPP1R14C	1
12231	PPP1R14D	1
12232	PPP1R15A	4.161561e-01
12233	PPP1R15B	1
12234	PPP1R16A	4.184051e-01
12235	PPP1R16B	4.881009e-03
12236	PPP1R1A	1
12237	PPP1R1B	4.368740e-01
12238	PPP1R1C	1
12239	PPP1R2	1
12240	PPP1R3A	2.817624e-02
12241	PPP1R3B	1
12242	PPP1R3C	1.958302e-01
12243	PPP1R3D	1.984222e-01
12244	PPP1R3F	1
12245	PPP1R7	1
12246	PPP1R8	1
12247	PPP1R9A	7.918211e-01
12248	PPP1R9B	4.660621e-01
12249	PPP2CA	1
12250	PPP2CB	1
12251	PPP2R1A	4.803988e-02
12252	PPP2R1B	8.165248e-01
12253	PPP2R2A	7.385145e-01
12254	PPP2R2B	8.413635e-01
12255	PPP2R2C	6.106619e-01
12256	PPP2R2D	8.399038e-01
12257	PPP2R3A	8.396398e-01
12258	PPP2R3B	1
12259	PPP2R3C	8.516064e-01
12260	PPP2R4	5.238736e-01
12261	PPP2R5A	5.569218e-01
12262	PPP2R5B	9.675071e-02
12263	PPP2R5C	1.408508e-01
12264	PPP2R5D	8.592282e-01
12265	PPP2R5E	1
12266	PPP3CA	1.034652e-01
12267	PPP3CB	1.793720e-01
12268	PPP3CC	4.760554e-01
12269	PPP3R1	3.547684e-01
12270	PPP3R2	1
12271	PPP4C	1
12272	PPP4R1	3.974208e-01
12273	PPP4R2	3.116752e-01
12274	PPP4R4	1
12275	PPP5C	1
12276	PPP6C	7.874376e-01
12277	PPPDE1	1
12278	PPPDE2	4.568370e-01
12279	PPRC1	9.749903e-01
12280	PPT1	6.261383e-01
12281	PPT2	6.887376e-01
12282	PPTC7	1
12283	PPWD1	9.204572e-01
12284	PPY	1
12285	PPYR1	2.381951e-01
12286	PQBP1	1
12287	PQLC1	6.317348e-01
12288	PQLC2	5.563098e-01
12289	PQLC3	4.072721e-01
12290	PRAC	6.725497e-03
12291	PRAF2	1
12292	PRAM1	1
12293	PRAME	5.702961e-01
12294	PRAMEF1	1.374466e-01
12295	PRAMEF10	1.332618e-01
12296	PRAMEF11	1
12297	PRAMEF12	1
12298	PRAMEF13	1
12299	PRAMEF14	1
12300	PRAMEF16	1
12301	PRAMEF17	1
12302	PRAMEF18	1
12303	PRAMEF19	1
12304	PRAMEF2	1
Done

Running MutSig 2:
Scatter job 136: processing genes 12214 - 12304
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
PPP1R3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.713548e-02	ci left: 8.322587e-01	ci right 8.467429e-01	k: 8396	n:10000
KS ci ratio: 6.326741e-03	ci left: 9.714304e-01	ci right 9.776890e-01	k: 9747	n:10000
PPP1R3A   10000 perm   2 sec   (4046 perm/sec)   p_kst 9.747000e-01   p_cons 8.396000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000136/PPP1R3A.16_3385_10000_0.9747_0.8396_1.png
                gene_name: PPP1R3A
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 3 percent done.
PPP1R16B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.315524e-02	ci left: 4.422106e-01	ci right 4.618174e-01	k: 4520	n:10000
Cons ci ratio: 2.181098e-02	ci left: 7.551466e-01	ci right 7.718996e-01	k: 7636	n:10000
KS ci ratio: 6.190635e-02	ci left: 2.772555e-01	ci right 2.950692e-01	k: 2861	n:10000
PPP1R16B   10000 perm   2 sec   (5289 perm/sec)   p_kst 2.861000e-01   p_cons 7.636000e-01   p_joint 4.520000e-01

Outputting figure to mutsig2_images.part000000000136/PPP1R16B.8_1744_10000_0.2861_0.7636_0.452.png
                gene_name: PPP1R16B
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 6 percent done.
PPP2R1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.250601e-02	ci left: 3.483974e-01	ci right 3.672855e-01	k: 3578	n:10000
Cons ci ratio: 6.295281e-02	ci left: 2.705218e-01	ci right 2.882069e-01	k: 2793	n:10000
KS ci ratio: 5.514330e-02	ci left: 3.263440e-01	ci right 3.449518e-01	k: 3356	n:10000
PPP2R1A   10000 perm   2 sec   (5243 perm/sec)   p_kst 3.356000e-01   p_cons 2.793000e-01   p_joint 3.578000e-01

Outputting figure to mutsig2_images.part000000000136/PPP2R1A.8_1830_10000_0.3356_0.2793_0.3578.png
                gene_name: PPP2R1A
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 9 percent done.
PPP1R13L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.818335e-02	ci left: 3.030243e-01	ci right 3.212853e-01	k: 3121	n:10000
Cons ci ratio: 3.126171e-02	ci left: 6.015643e-01	ci right 6.207708e-01	k: 6112	n:10000
KS ci ratio: 7.869324e-02	ci left: 1.909179e-01	ci right 2.066579e-01	k: 1987	n:10000
PPP1R13L   10000 perm   2 sec   (4438 perm/sec)   p_kst 1.987000e-01   p_cons 6.112000e-01   p_joint 3.121000e-01

Outputting figure to mutsig2_images.part000000000136/PPP1R13L.6_2535_10000_0.1987_0.6112_0.3121.png
                gene_name: PPP1R13L
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 11 percent done.
PPP2R5C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.011368e-01	ci left: 1.239561e-01	ci right 1.372599e-01	k: 1305	n:10000
Cons ci ratio: 1.098228e-01	ci left: 1.067607e-01	ci right 1.192658e-01	k: 1129	n:10000
KS ci ratio: 1.259546e-01	ci left: 8.271234e-02	ci right 9.392883e-02	k: 882	n:10000
PPP2R5C   10000 perm   2 sec   (5694 perm/sec)   p_kst 8.820000e-02   p_cons 1.129000e-01   p_joint 1.305000e-01

Joint ci ratio: 9.902981e-02	ci left: 6.904119e-02	ci right 7.628364e-02	k: 1452	n:20000
Cons ci ratio: 7.868207e-02	ci left: 1.060395e-01	ci right 1.147742e-01	k: 2207	n:20000
KS ci ratio: 9.076681e-02	ci left: 8.141531e-02	ci right 8.920575e-02	k: 1705	n:20000
PPP2R5C   20000 perm   4 sec   (4995 perm/sec)   p_kst 8.525000e-02   p_cons 1.103500e-01   p_joint 7.260000e-02

Outputting figure to mutsig2_images.part000000000136/PPP2R5C.6_2024_20000_0.08525_0.11035_0.0726.png
                gene_name: PPP2R5C
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.085 
        ci_ks_bounds_left: 0.081 
       ci_ks_bounds_right: 0.089 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.073 
     ci_joint_bounds_left: 0.069 
    ci_joint_bounds_right: 0.076 

Current progress: 14 percent done.
PPRC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.251712e-02	ci left: 7.433121e-01	ci right 7.603410e-01	k: 7519	n:10000
Cons ci ratio: 4.081055e-02	ci left: 4.699653e-01	ci right 4.896465e-01	k: 4798	n:10000
KS ci ratio: 1.330145e-02	ci left: 8.906714e-01	ci right 9.026964e-01	k: 8968	n:10000
PPRC1   10000 perm   2 sec   (4097 perm/sec)   p_kst 8.968000e-01   p_cons 4.798000e-01   p_joint 7.519000e-01

Outputting figure to mutsig2_images.part000000000136/PPRC1.6_5051_10000_0.8968_0.4798_0.7519.png
                gene_name: PPRC1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 17 percent done.
PPP1R12B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.701452e-02	ci left: 8.341928e-01	ci right 8.486078e-01	k: 8415	n:10000
Cons ci ratio: 4.636081e-02	ci left: 4.071122e-01	ci right 4.265363e-01	k: 4168	n:10000
KS ci ratio: 2.417193e-02	ci left: 7.156290e-01	ci right 7.332401e-01	k: 7245	n:10000
PPP1R12B   10000 perm   2 sec   (4393 perm/sec)   p_kst 7.245000e-01   p_cons 4.168000e-01   p_joint 8.415000e-01

Outputting figure to mutsig2_images.part000000000136/PPP1R12B.5_3274_10000_0.7245_0.4168_0.8415.png
                gene_name: PPP1R12B
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 20 percent done.
PPP1R13B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.561466e-02	ci left: 1.658291e-01	ci right 1.807618e-01	k: 1732	n:10000
Cons ci ratio: 4.443180e-02	ci left: 4.278462e-01	ci right 4.473902e-01	k: 4376	n:10000
KS ci ratio: 8.461249e-02	ci left: 1.691711e-01	ci right 1.842178e-01	k: 1766	n:10000
PPP1R13B   10000 perm   2 sec   (4546 perm/sec)   p_kst 1.766000e-01   p_cons 4.376000e-01   p_joint 1.732000e-01

Outputting figure to mutsig2_images.part000000000136/PPP1R13B.5_3341_10000_0.1766_0.4376_0.1732.png
                gene_name: PPP1R13B
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 23 percent done.
PPP4R1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.785097e-01	ci left: 4.188120e-02	ci right 5.018585e-02	k: 459	n:10000
Cons ci ratio: 1.872080e-01	ci left: 3.805695e-02	ci right 4.601263e-02	k: 419	n:10000
KS ci ratio: 1.174650e-01	ci left: 9.428457e-02	ci right 1.061495e-01	k: 1001	n:10000
PPP4R1   10000 perm   2 sec   (4704 perm/sec)   p_kst 1.001000e-01   p_cons 4.190000e-02   p_joint 4.590000e-02

Joint ci ratio: 1.628626e-01	ci left: 2.585348e-02	ci right 3.048506e-02	k: 562	n:20000
Cons ci ratio: 1.363231e-01	ci left: 3.698772e-02	ci right 4.244714e-02	k: 793	n:20000
KS ci ratio: 8.315414e-02	ci left: 9.582658e-02	ci right 1.041901e-01	k: 1999	n:20000
PPP4R1   20000 perm   5 sec   (4152 perm/sec)   p_kst 9.995000e-02   p_cons 3.965000e-02   p_joint 2.810000e-02

Joint ci ratio: 1.320554e-01	ci left: 2.664618e-02	ci right 3.044585e-02	k: 855	n:30000
Cons ci ratio: 1.111140e-01	ci left: 3.761587e-02	ci right 4.207381e-02	k: 1194	n:30000
KS ci ratio: 6.726204e-02	ci left: 9.826893e-02	ci right 1.051418e-01	k: 3050	n:30000
PPP4R1   30000 perm   7 sec   (4002 perm/sec)   p_kst 1.016667e-01   p_cons 3.980000e-02   p_joint 2.850000e-02

Joint ci ratio: 1.441568e-01	ci left: 1.684024e-02	ci right 1.948037e-02	k: 725	n:40000
Cons ci ratio: 9.589410e-02	ci left: 3.817386e-02	ci right 4.204327e-02	k: 1603	n:40000
KS ci ratio: 5.836269e-02	ci left: 9.838433e-02	ci right 1.043237e-01	k: 4053	n:40000
PPP4R1   40000 perm   10 sec   (3897 perm/sec)   p_kst 1.013250e-01   p_cons 4.007500e-02   p_joint 1.812500e-02

Joint ci ratio: 1.080681e-01	ci left: 2.425270e-02	ci right 2.704274e-02	k: 1281	n:50000
Cons ci ratio: 8.943538e-02	ci left: 3.534282e-02	ci right 3.867121e-02	k: 1849	n:50000
KS ci ratio: 5.233065e-02	ci left: 9.825340e-02	ci right 1.035530e-01	k: 5044	n:50000
PPP4R1   50000 perm   13 sec   (3811 perm/sec)   p_kst 1.008800e-01   p_cons 3.698000e-02   p_joint 2.562000e-02

Joint ci ratio: 9.612963e-02	ci left: 2.566884e-02	ci right 2.827718e-02	k: 1617	n:60000
Cons ci ratio: 8.179625e-02	ci left: 3.535667e-02	ci right 3.838834e-02	k: 2211	n:60000
KS ci ratio: 4.782832e-02	ci left: 9.827014e-02	ci right 1.031019e-01	k: 6040	n:60000
PPP4R1   60000 perm   16 sec   (3737 perm/sec)   p_kst 1.006667e-01   p_cons 3.685000e-02   p_joint 2.695000e-02

Outputting figure to mutsig2_images.part000000000136/PPP4R1.5_2933_60000_0.10067_0.03685_0.02695.png
                gene_name: PPP4R1
               theta_stop: 0.096 
                    nperm: 60000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.098 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.037 
      ci_cons_bounds_left: 0.035 
     ci_cons_bounds_right: 0.038 
                  p_joint: 0.027 
     ci_joint_bounds_left: 0.026 
    ci_joint_bounds_right: 0.028 

Current progress: 26 percent done.
PPP1R9A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.462208e-02	ci left: 8.713228e-01	ci right 8.842562e-01	k: 8779	n:10000
Cons ci ratio: 3.017375e-02	ci left: 6.183401e-01	ci right 6.373854e-01	k: 6279	n:10000
KS ci ratio: 1.571990e-02	ci left: 8.545745e-01	ci right 8.682142e-01	k: 8615	n:10000
PPP1R9A   10000 perm   2 sec   (4616 perm/sec)   p_kst 8.615000e-01   p_cons 6.279000e-01   p_joint 8.779000e-01

Outputting figure to mutsig2_images.part000000000136/PPP1R9A.4_4229_10000_0.8615_0.6279_0.8779.png
                gene_name: PPP1R9A
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 29 percent done.
PPP2R5B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.031327e-01	ci left: 3.224430e-02	ci right 3.962922e-02	k: 358	n:10000
Cons ci ratio: 6.717872e-02	ci left: 2.453921e-01	ci right 2.625515e-01	k: 2539	n:10000
KS ci ratio: 2.371212e-01	ci left: 2.344048e-02	ci right 2.983930e-02	k: 265	n:10000
PPP2R5B   10000 perm   2 sec   (5679 perm/sec)   p_kst 2.650000e-02   p_cons 2.539000e-01   p_joint 3.580000e-02

Joint ci ratio: 8.179755e-02	ci left: 9.877126e-02	ci right 1.072446e-01	k: 2059	n:20000
Cons ci ratio: 4.776125e-02	ci left: 2.458951e-01	ci right 2.579771e-01	k: 5038	n:20000
KS ci ratio: 1.662350e-01	ci left: 2.479765e-02	ci right 2.934125e-02	k: 540	n:20000
PPP2R5B   20000 perm   4 sec   (5012 perm/sec)   p_kst 2.700000e-02   p_cons 2.519000e-01   p_joint 1.029500e-01

Joint ci ratio: 1.319761e-01	ci left: 2.667845e-02	ci right 3.048025e-02	k: 856	n:30000
Cons ci ratio: 3.878265e-02	ci left: 2.490816e-01	ci right 2.589661e-01	k: 7620	n:30000
KS ci ratio: 1.341676e-01	ci left: 2.580763e-02	ci right 2.955126e-02	k: 829	n:30000
PPP2R5B   30000 perm   6 sec   (4781 perm/sec)   p_kst 2.763333e-02   p_cons 2.540000e-01   p_joint 2.853333e-02

Joint ci ratio: 1.102240e-01	ci left: 2.895814e-02	ci right 3.236045e-02	k: 1225	n:40000
Cons ci ratio: 3.373217e-02	ci left: 2.481238e-01	ci right 2.566622e-01	k: 10095	n:40000
KS ci ratio: 1.167184e-01	ci left: 2.582210e-02	ci right 2.904700e-02	k: 1096	n:40000
PPP2R5B   40000 perm   9 sec   (4606 perm/sec)   p_kst 2.740000e-02   p_cons 2.523750e-01   p_joint 3.062500e-02

Joint ci ratio: 8.646925e-02	ci left: 3.777031e-02	ci right 4.120342e-02	k: 1973	n:50000
Cons ci ratio: 2.921531e-02	ci left: 2.608567e-01	ci right 2.686107e-01	k: 13236	n:50000
KS ci ratio: 1.037466e-01	ci left: 2.631798e-02	ci right 2.921719e-02	k: 1387	n:50000
PPP2R5B   50000 perm   11 sec   (4473 perm/sec)   p_kst 2.774000e-02   p_cons 2.647200e-01   p_joint 3.946000e-02

Joint ci ratio: 7.728248e-02	ci left: 3.952542e-02	ci right 4.271916e-02	k: 2466	n:60000
Cons ci ratio: 2.661444e-02	ci left: 2.620028e-01	ci right 2.690866e-01	k: 15932	n:60000
KS ci ratio: 9.374505e-02	ci left: 2.698764e-02	ci right 2.965825e-02	k: 1698	n:60000
PPP2R5B   60000 perm   14 sec   (4367 perm/sec)   p_kst 2.830000e-02   p_cons 2.655333e-01   p_joint 4.110000e-02

Outputting figure to mutsig2_images.part000000000136/PPP2R5B.4_1546_60000_0.0283_0.26553_0.0411.png
                gene_name: PPP2R5B
               theta_stop: 0.094 
                    nperm: 60000 
                     p_ks: 0.028 
        ci_ks_bounds_left: 0.027 
       ci_ks_bounds_right: 0.030 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.041 
     ci_joint_bounds_left: 0.040 
    ci_joint_bounds_right: 0.043 

Current progress: 31 percent done.
PPP3CA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.312913e-02	ci left: 4.425100e-01	ci right 4.621178e-01	k: 4523	n:10000
Cons ci ratio: 6.975563e-02	ci left: 2.315572e-01	ci right 2.483945e-01	k: 2399	n:10000
KS ci ratio: 5.664796e-02	ci left: 3.145320e-01	ci right 3.329708e-01	k: 3237	n:10000
PPP3CA   10000 perm   2 sec   (5515 perm/sec)   p_kst 3.237000e-01   p_cons 2.399000e-01   p_joint 4.523000e-01

Outputting figure to mutsig2_images.part000000000136/PPP3CA.4_1622_10000_0.3237_0.2399_0.4523.png
                gene_name: PPP3CA
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 34 percent done.
PPP3CB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.226371e-02	ci left: 7.475594e-01	ci right 7.644912e-01	k: 7561	n:10000
Cons ci ratio: 6.380780e-02	ci left: 2.651762e-01	ci right 2.827556e-01	k: 2739	n:10000
KS ci ratio: 2.987749e-02	ci left: 6.229630e-01	ci right 6.419597e-01	k: 6325	n:10000
PPP3CB   10000 perm   2 sec   (5519 perm/sec)   p_kst 6.325000e-01   p_cons 2.739000e-01   p_joint 7.561000e-01

Outputting figure to mutsig2_images.part000000000136/PPP3CB.4_1634_10000_0.6325_0.2739_0.7561.png
                gene_name: PPP3CB
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.76 

Current progress: 37 percent done.
PPP3R2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.013601e-01	ci left: 1.234670e-01	ci right 1.367493e-01	k: 1300	n:10000
Cons ci ratio: 9.537790e-02	ci left: 1.375651e-01	ci right 1.514427e-01	k: 1444	n:10000
KS ci ratio: 9.487959e-02	ci left: 1.388391e-01	ci right 1.527680e-01	k: 1457	n:10000
PPP3R2   10000 perm   2 sec   (6273 perm/sec)   p_kst 1.457000e-01   p_cons 1.444000e-01   p_joint 1.300000e-01

Joint ci ratio: 7.368931e-02	ci left: 1.193638e-01	ci right 1.285458e-01	k: 2478	n:20000
Cons ci ratio: 6.418008e-02	ci left: 1.521312e-01	ci right 1.622687e-01	k: 3143	n:20000
KS ci ratio: 6.612505e-02	ci left: 1.444857e-01	ci right 1.544164e-01	k: 2988	n:20000
PPP3R2   20000 perm   4 sec   (5522 perm/sec)   p_kst 1.494000e-01   p_cons 1.571500e-01   p_joint 1.239000e-01

Outputting figure to mutsig2_images.part000000000136/PPP3R2.4_526_20000_0.1494_0.15715_0.1239.png
                gene_name: PPP3R2
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 40 percent done.
PPYR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.793088e-02	ci left: 3.910755e-01	ci right 4.103824e-01	k: 4007	n:10000
Cons ci ratio: 3.787610e-02	ci left: 5.072521e-01	ci right 5.269379e-01	k: 5171	n:10000
KS ci ratio: 9.707249e-02	ci left: 1.333527e-01	ci right 1.470577e-01	k: 1401	n:10000
PPYR1   10000 perm   2 sec   (5612 perm/sec)   p_kst 1.401000e-01   p_cons 5.171000e-01   p_joint 4.007000e-01

Outputting figure to mutsig2_images.part000000000136/PPYR1.4_1132_10000_0.1401_0.5171_0.4007.png
                gene_name: PPYR1
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 43 percent done.
PRAME
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.592830e-02	ci left: 5.335757e-01	ci right 5.531990e-01	k: 5434	n:10000
Cons ci ratio: 2.052141e-02	ci left: 7.767143e-01	ci right 7.929195e-01	k: 7849	n:10000
KS ci ratio: 6.886859e-02	ci left: 2.362004e-01	ci right 2.531486e-01	k: 2446	n:10000
PRAME   10000 perm   2 sec   (5436 perm/sec)   p_kst 2.446000e-01   p_cons 7.849000e-01   p_joint 5.434000e-01

Outputting figure to mutsig2_images.part000000000136/PRAME.4_1546_10000_0.2446_0.7849_0.5434.png
                gene_name: PRAME
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 46 percent done.
PRAMEF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.303765e-01	ci left: 7.747081e-02	ci right 8.837361e-02	k: 828	n:10000
Cons ci ratio: 6.334593e-02	ci left: 2.680468e-01	ci right 2.856834e-01	k: 2768	n:10000
KS ci ratio: 1.460418e-01	ci left: 6.227288e-02	ci right 7.218104e-02	k: 671	n:10000
PRAMEF1   10000 perm   2 sec   (5629 perm/sec)   p_kst 6.710000e-02   p_cons 2.768000e-01   p_joint 8.280000e-02

Joint ci ratio: 9.493467e-02	ci left: 7.480898e-02	ci right 8.231408e-02	k: 1570	n:20000
Cons ci ratio: 4.752171e-02	ci left: 2.477799e-01	ci right 2.598918e-01	k: 5076	n:20000
KS ci ratio: 1.033106e-01	ci left: 6.367065e-02	ci right 7.065583e-02	k: 1342	n:20000
PRAMEF1   20000 perm   4 sec   (5022 perm/sec)   p_kst 6.710000e-02   p_cons 2.538000e-01   p_joint 7.850000e-02

Joint ci ratio: 7.904440e-02	ci left: 7.276401e-02	ci right 7.878512e-02	k: 2272	n:30000
Cons ci ratio: 3.901253e-02	ci left: 2.468628e-01	ci right 2.567186e-01	k: 7553	n:30000
KS ci ratio: 8.356670e-02	ci left: 6.547070e-02	ci right 7.121324e-02	k: 2049	n:30000
PRAMEF1   30000 perm   6 sec   (4775 perm/sec)   p_kst 6.830000e-02   p_cons 2.517667e-01   p_joint 7.573333e-02

Outputting figure to mutsig2_images.part000000000136/PRAMEF1.4_1437_30000_0.0683_0.25177_0.075733.png
                gene_name: PRAMEF1
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.068 
        ci_ks_bounds_left: 0.065 
       ci_ks_bounds_right: 0.071 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.076 
     ci_joint_bounds_left: 0.073 
    ci_joint_bounds_right: 0.079 

Current progress: 49 percent done.
PRAMEF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.821285e-02	ci left: 1.575769e-01	ci right 1.722188e-01	k: 1648	n:10000
Cons ci ratio: 3.733977e-01	ci left: 8.867630e-03	ci right 1.302464e-02	k: 108	n:10000
KS ci ratio: 2.825866e-02	ci left: 6.486074e-01	ci right 6.673005e-01	k: 6580	n:10000
PRAMEF2   10000 perm   2 sec   (5968 perm/sec)   p_kst 6.580000e-01   p_cons 1.080000e-02   p_joint 1.648000e-01

Joint ci ratio: 6.160676e-02	ci left: 1.631384e-01	ci right 1.735582e-01	k: 3366	n:20000
Cons ci ratio: 2.443899e-01	ci left: 1.114729e-02	ci right 1.429674e-02	k: 253	n:20000
KS ci ratio: 2.039493e-02	ci left: 6.420880e-01	ci right 6.553687e-01	k: 12975	n:20000
PRAMEF2   20000 perm   4 sec   (5248 perm/sec)   p_kst 6.487500e-01   p_cons 1.265000e-02   p_joint 1.683000e-01

Joint ci ratio: 5.536660e-02	ci left: 1.391884e-01	ci right 1.471475e-01	k: 4294	n:30000
Cons ci ratio: 1.998109e-01	ci left: 1.140021e-02	ci right 1.396212e-02	k: 379	n:30000
KS ci ratio: 1.623995e-02	ci left: 6.547080e-01	ci right 6.654610e-01	k: 19803	n:30000
PRAMEF2   30000 perm   6 sec   (5001 perm/sec)   p_kst 6.601000e-01   p_cons 1.263333e-02   p_joint 1.431333e-01

Joint ci ratio: 4.841204e-02	ci left: 1.374051e-01	ci right 1.442471e-01	k: 5632	n:40000
Cons ci ratio: 1.717872e-01	ci left: 1.174531e-02	ci right 1.397624e-02	k: 513	n:40000
KS ci ratio: 1.408468e-02	ci left: 6.547820e-01	ci right 6.640949e-01	k: 26378	n:40000
PRAMEF2   40000 perm   8 sec   (4816 perm/sec)   p_kst 6.594500e-01   p_cons 1.282500e-02   p_joint 1.408000e-01

Joint ci ratio: 4.374409e-02	ci left: 1.353446e-01	ci right 1.414174e-01	k: 6918	n:50000
Cons ci ratio: 1.554381e-01	ci left: 1.158300e-02	ci right 1.355419e-02	k: 627	n:50000
KS ci ratio: 1.261488e-02	ci left: 6.546653e-01	ci right 6.629963e-01	k: 32942	n:50000
PRAMEF2   50000 perm   11 sec   (4675 perm/sec)   p_kst 6.588400e-01   p_cons 1.254000e-02   p_joint 1.383600e-01

Joint ci ratio: 4.003016e-02	ci left: 1.350347e-01	ci right 1.405671e-01	k: 8267	n:60000
Cons ci ratio: 1.434059e-01	ci left: 1.141730e-02	ci right 1.319700e-02	k: 737	n:60000
KS ci ratio: 1.149505e-02	ci left: 6.558427e-01	ci right 6.634419e-01	k: 39579	n:60000
PRAMEF2   60000 perm   13 sec   (4565 perm/sec)   p_kst 6.596500e-01   p_cons 1.228333e-02   p_joint 1.377833e-01

Joint ci ratio: 3.699185e-02	ci left: 1.356797e-01	ci right 1.408075e-01	k: 9676	n:70000
Cons ci ratio: 1.319176e-01	ci left: 1.163479e-02	ci right 1.329171e-02	k: 871	n:70000
KS ci ratio: 1.061073e-02	ci left: 6.574652e-01	ci right 6.644929e-01	k: 46269	n:70000
PRAMEF2   70000 perm   16 sec   (4462 perm/sec)   p_kst 6.609857e-01   p_cons 1.244286e-02   p_joint 1.382286e-01

Joint ci ratio: 3.449139e-02	ci left: 1.366096e-01	ci right 1.414166e-01	k: 11120	n:80000
Cons ci ratio: 1.236853e-01	ci left: 1.163251e-02	ci right 1.317815e-02	k: 991	n:80000
KS ci ratio: 9.929831e-03	ci left: 6.574947e-01	ci right 6.640686e-01	k: 52863	n:80000
PRAMEF2   80000 perm   18 sec   (4368 perm/sec)   p_kst 6.607875e-01   p_cons 1.238750e-02   p_joint 1.390000e-01

Joint ci ratio: 3.253108e-02	ci left: 1.366577e-01	ci right 1.411878e-01	k: 12502	n:90000
Cons ci ratio: 1.159819e-01	ci left: 1.180592e-02	ci right 1.327020e-02	k: 1127	n:90000
KS ci ratio: 9.379556e-03	ci left: 6.568388e-01	ci right 6.630398e-01	k: 59395	n:90000
PRAMEF2   90000 perm   21 sec   (4284 perm/sec)   p_kst 6.599444e-01   p_cons 1.252222e-02   p_joint 1.389111e-01

Joint ci ratio: 3.086070e-02	ci left: 1.367819e-01	ci right 1.410791e-01	k: 13892	n:100000
Cons ci ratio: 1.102233e-01	ci left: 1.180110e-02	ci right 1.318739e-02	k: 1248	n:100000
KS ci ratio: 8.902091e-03	ci left: 6.568039e-01	ci right 6.626869e-01	k: 65975	n:100000
PRAMEF2   100000 perm   24 sec   (4203 perm/sec)   p_kst 6.597500e-01   p_cons 1.248000e-02   p_joint 1.389200e-01

Joint ci ratio: 2.963692e-02	ci left: 1.351809e-01	ci right 1.392565e-01	k: 15093	n:110000
Cons ci ratio: 1.059126e-01	ci left: 1.164813e-02	ci right 1.295959e-02	k: 1352	n:110000
KS ci ratio: 8.477421e-03	ci left: 6.574925e-01	ci right 6.630991e-01	k: 72633	n:110000
PRAMEF2   110000 perm   27 sec   (4127 perm/sec)   p_kst 6.603000e-01   p_cons 1.229091e-02   p_joint 1.372091e-01

Joint ci ratio: 2.842442e-02	ci left: 1.348604e-01	ci right 1.387572e-01	k: 16416	n:120000
Cons ci ratio: 1.013342e-01	ci left: 1.169214e-02	ci right 1.294826e-02	k: 1477	n:120000
KS ci ratio: 8.123152e-03	ci left: 6.572450e-01	ci right 6.626139e-01	k: 79192	n:120000
PRAMEF2   120000 perm   30 sec   (4053 perm/sec)   p_kst 6.599333e-01   p_cons 1.230833e-02   p_joint 1.368000e-01

Joint ci ratio: 2.689473e-02	ci left: 1.385693e-01	ci right 1.423545e-01	k: 18259	n:130000
Cons ci ratio: 9.681435e-02	ci left: 1.185054e-02	ci right 1.306366e-02	k: 1618	n:130000
KS ci ratio: 7.795695e-03	ci left: 6.578568e-01	ci right 6.630130e-01	k: 85857	n:130000
PRAMEF2   130000 perm   33 sec   (3984 perm/sec)   p_kst 6.604385e-01   p_cons 1.244615e-02   p_joint 1.404538e-01

Outputting figure to mutsig2_images.part000000000136/PRAMEF2.4_1437_130000_0.66044_0.012446_0.14045.png
                gene_name: PRAMEF2
               theta_stop: 0.097 
                    nperm: 130000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.012 
      ci_cons_bounds_left: 0.012 
     ci_cons_bounds_right: 0.013 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.14 

Current progress: 51 percent done.
PPP1R12C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.955702e-02	ci left: 6.279891e-01	ci right 6.469308e-01	k: 6375	n:10000
KS ci ratio: 7.947409e-03	ci left: 9.566005e-01	ci right 9.643283e-01	k: 9606	n:10000
PPP1R12C   10000 perm   2 sec   (5151 perm/sec)   p_kst 9.606000e-01   p_cons 6.375000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000136/PPP1R12C.3_2437_10000_0.9606_0.6375_1.png
                gene_name: PPP1R12C
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 54 percent done.
PPP1R15A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.890004e-02	ci left: 8.035925e-01	ci right 8.190257e-01	k: 8114	n:10000
Cons ci ratio: 3.009633e-02	ci left: 6.195460e-01	ci right 6.385788e-01	k: 6291	n:10000
KS ci ratio: 1.468336e-02	ci left: 8.704028e-01	ci right 8.833768e-01	k: 8770	n:10000
PPP1R15A   10000 perm   2 sec   (5470 perm/sec)   p_kst 8.770000e-01   p_cons 6.291000e-01   p_joint 8.114000e-01

Outputting figure to mutsig2_images.part000000000136/PPP1R15A.3_2033_10000_0.877_0.6291_0.8114.png
                gene_name: PPP1R15A
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 57 percent done.
PPP1R15B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.457014e-02	ci left: 2.605249e-01	ci right 2.780097e-01	k: 2692	n:10000
Cons ci ratio: 1.192588e-01	ci left: 9.165653e-02	ci right 1.033791e-01	k: 974	n:10000
KS ci ratio: 2.315671e-02	ci left: 7.325974e-01	ci right 7.498618e-01	k: 7413	n:10000
PPP1R15B   10000 perm   2 sec   (5469 perm/sec)   p_kst 7.413000e-01   p_cons 9.740000e-02   p_joint 2.692000e-01

Joint ci ratio: 4.380142e-02	ci left: 2.796444e-01	ci right 2.922179e-01	k: 5718	n:20000
Cons ci ratio: 8.195287e-02	ci left: 9.842765e-02	ci right 1.068883e-01	k: 2052	n:20000
KS ci ratio: 1.647478e-02	ci left: 7.328036e-01	ci right 7.450269e-01	k: 14779	n:20000
PPP1R15B   20000 perm   4 sec   (4774 perm/sec)   p_kst 7.389500e-01   p_cons 1.026000e-01   p_joint 2.859000e-01

Outputting figure to mutsig2_images.part000000000136/PPP1R15B.3_2150_20000_0.73895_0.1026_0.2859.png
                gene_name: PPP1R15B
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.098 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 60 percent done.
PPP2R3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.554831e-02	ci left: 8.572275e-01	ci right 8.707597e-01	k: 8641	n:10000
Cons ci ratio: 6.169492e-02	ci left: 2.786422e-01	ci right 2.964817e-01	k: 2875	n:10000
KS ci ratio: 4.564363e-02	ci left: 4.146860e-01	ci right 4.341580e-01	k: 4244	n:10000
PPP2R3A   10000 perm   2 sec   (4864 perm/sec)   p_kst 4.244000e-01   p_cons 2.875000e-01   p_joint 8.641000e-01

Outputting figure to mutsig2_images.part000000000136/PPP2R3A.3_3641_10000_0.4244_0.2875_0.8641.png
                gene_name: PPP2R3A
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 63 percent done.
PRAMEF10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.824171e-01	ci left: 1.622887e-02	ci right 2.165650e-02	k: 188	n:10000
Cons ci ratio: 1.092784e-01	ci left: 1.077365e-01	ci right 1.202894e-01	k: 1139	n:10000
KS ci ratio: 2.855121e-01	ci left: 1.585693e-02	ci right 2.122875e-02	k: 184	n:10000
PRAMEF10   10000 perm   2 sec   (5826 perm/sec)   p_kst 1.840000e-02   p_cons 1.139000e-01   p_joint 1.880000e-02

Joint ci ratio: 1.723925e-01	ci left: 2.302419e-02	ci right 2.741533e-02	k: 503	n:20000
Cons ci ratio: 7.683620e-02	ci left: 1.107082e-01	ci right 1.196041e-01	k: 2302	n:20000
KS ci ratio: 1.927994e-01	ci left: 1.829524e-02	ci right 2.224596e-02	k: 404	n:20000
PRAMEF10   20000 perm   4 sec   (5151 perm/sec)   p_kst 2.020000e-02   p_cons 1.151000e-01   p_joint 2.515000e-02

Joint ci ratio: 1.295079e-01	ci left: 2.771117e-02	ci right 3.158063e-02	k: 888	n:30000
Cons ci ratio: 6.294816e-02	ci left: 1.108519e-01	ci right 1.180896e-01	k: 3433	n:30000
KS ci ratio: 1.540268e-01	ci left: 1.950355e-02	ci right 2.279010e-02	k: 633	n:30000
PRAMEF10   30000 perm   6 sec   (4894 perm/sec)   p_kst 2.110000e-02   p_cons 1.144333e-01   p_joint 2.960000e-02

Joint ci ratio: 1.185648e-01	ci left: 2.502076e-02	ci right 2.819847e-02	k: 1063	n:40000
Cons ci ratio: 5.474240e-02	ci left: 1.105059e-01	ci right 1.167503e-01	k: 4544	n:40000
KS ci ratio: 1.324608e-01	ci left: 2.000416e-02	ci right 2.286591e-02	k: 856	n:40000
PRAMEF10   40000 perm   8 sec   (4722 perm/sec)   p_kst 2.140000e-02   p_cons 1.136000e-01   p_joint 2.657500e-02

Joint ci ratio: 1.131040e-01	ci left: 2.213158e-02	ci right 2.480414e-02	k: 1172	n:50000
Cons ci ratio: 4.924847e-02	ci left: 1.096836e-01	ci right 1.152415e-01	k: 5622	n:50000
KS ci ratio: 1.190030e-01	ci left: 1.997464e-02	ci right 2.252137e-02	k: 1061	n:50000
PRAMEF10   50000 perm   11 sec   (4596 perm/sec)   p_kst 2.122000e-02   p_cons 1.124400e-01   p_joint 2.344000e-02

Joint ci ratio: 1.180911e-01	ci left: 1.696740e-02	ci right 1.911291e-02	k: 1081	n:60000
Cons ci ratio: 4.851438e-02	ci left: 9.574758e-02	ci right 1.005247e-01	k: 5887	n:60000
KS ci ratio: 1.090021e-01	ci left: 1.994869e-02	ci right 2.226462e-02	k: 1265	n:60000
PRAMEF10   60000 perm   13 sec   (4484 perm/sec)   p_kst 2.108333e-02   p_cons 9.811667e-02   p_joint 1.801667e-02

Joint ci ratio: 1.131977e-01	ci left: 1.588862e-02	ci right 1.780888e-02	k: 1178	n:70000
Cons ci ratio: 4.496767e-02	ci left: 9.572220e-02	ci right 1.001398e-01	k: 6854	n:70000
KS ci ratio: 1.015860e-01	ci left: 1.976946e-02	ci right 2.189909e-02	k: 1457	n:70000
PRAMEF10   70000 perm   16 sec   (4385 perm/sec)   p_kst 2.081429e-02   p_cons 9.791429e-02   p_joint 1.682857e-02

Joint ci ratio: 1.026208e-01	ci left: 1.699249e-02	ci right 1.884270e-02	k: 1432	n:80000
Cons ci ratio: 4.207321e-02	ci left: 9.582428e-02	ci right 9.995493e-02	k: 7830	n:80000
KS ci ratio: 9.541425e-02	ci left: 1.967572e-02	ci right 2.165926e-02	k: 1652	n:80000
PRAMEF10   80000 perm   19 sec   (4296 perm/sec)   p_kst 2.065000e-02   p_cons 9.787500e-02   p_joint 1.790000e-02

Joint ci ratio: 9.391818e-02	ci left: 1.809632e-02	ci right 1.989043e-02	k: 1708	n:90000
Cons ci ratio: 3.961440e-02	ci left: 9.617513e-02	ci right 1.000730e-01	k: 8830	n:90000
KS ci ratio: 9.012153e-02	ci left: 1.966020e-02	ci right 2.152643e-02	k: 1852	n:90000
PRAMEF10   90000 perm   21 sec   (4203 perm/sec)   p_kst 2.057778e-02   p_cons 9.811111e-02   p_joint 1.897778e-02

Outputting figure to mutsig2_images.part000000000136/PRAMEF10.3_1437_90000_0.020578_0.098111_0.018978.png
                gene_name: PRAMEF10
               theta_stop: 0.094 
                    nperm: 90000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.022 
                   p_cons: 0.098 
      ci_cons_bounds_left: 0.096 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.019 
     ci_joint_bounds_left: 0.018 
    ci_joint_bounds_right: 0.020 

Current progress: 66 percent done.
PPP1R16A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.703224e-02	ci left: 1.334506e-01	ci right 1.471597e-01	k: 1402	n:10000
Cons ci ratio: 8.809519e-03	ci left: 9.476267e-01	ci right 9.561076e-01	k: 9520	n:10000
KS ci ratio: 1.343015e-01	ci left: 7.320496e-02	ci right 8.384211e-02	k: 784	n:10000
PPP1R16A   10000 perm   2 sec   (6125 perm/sec)   p_kst 7.840000e-02   p_cons 9.520000e-01   p_joint 1.402000e-01

Joint ci ratio: 6.697016e-02	ci left: 1.413302e-01	ci right 1.511729e-01	k: 2924	n:20000
Cons ci ratio: 6.195973e-03	ci left: 9.494092e-01	ci right 9.553584e-01	k: 19049	n:20000
KS ci ratio: 9.500031e-02	ci left: 7.471117e-02	ci right 8.221193e-02	k: 1568	n:20000
PPP1R16A   20000 perm   4 sec   (5381 perm/sec)   p_kst 7.840000e-02   p_cons 9.524500e-01   p_joint 1.462000e-01

Outputting figure to mutsig2_images.part000000000136/PPP1R16A.2_1627_20000_0.0784_0.95245_0.1462.png
                gene_name: PPP1R16A
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.078 
        ci_ks_bounds_left: 0.075 
       ci_ks_bounds_right: 0.082 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 69 percent done.
PPP1R3C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.265852e-02	ci left: 1.447212e-01	ci right 1.588823e-01	k: 1517	n:10000
Cons ci ratio: 2.379086e-02	ci left: 7.219903e-01	ci right 7.394751e-01	k: 7308	n:10000
KS ci ratio: 1.336559e-01	ci left: 7.388330e-02	ci right 8.456334e-02	k: 791	n:10000
PPP1R3C   10000 perm   2 sec   (6658 perm/sec)   p_kst 7.910000e-02   p_cons 7.308000e-01   p_joint 1.517000e-01

Joint ci ratio: 4.338678e-02	ci left: 2.835185e-01	ci right 2.961427e-01	k: 5796	n:20000
Cons ci ratio: 1.667551e-02	ci left: 7.280693e-01	ci right 7.403626e-01	k: 14685	n:20000
KS ci ratio: 9.412430e-02	ci left: 7.603179e-02	ci right 8.359090e-02	k: 1595	n:20000
PPP1R3C   20000 perm   3 sec   (5759 perm/sec)   p_kst 7.975000e-02   p_cons 7.342500e-01   p_joint 2.898000e-01

Outputting figure to mutsig2_images.part000000000136/PPP1R3C.2_962_20000_0.07975_0.73425_0.2898.png
                gene_name: PPP1R3C
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.080 
        ci_ks_bounds_left: 0.076 
       ci_ks_bounds_right: 0.084 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 71 percent done.
PPP1R3D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.905474e-01	ci left: 3.672071e-02	ci right 4.454977e-02	k: 405	n:10000
Cons ci ratio: 1.485455e-01	ci left: 6.024541e-02	ci right 7.000980e-02	k: 650	n:10000
KS ci ratio: 1.048147e-01	ci left: 1.162323e-01	ci right 1.291883e-01	k: 1226	n:10000
PPP1R3D   10000 perm   1 sec   (6905 perm/sec)   p_kst 1.226000e-01   p_cons 6.500000e-02   p_joint 4.050000e-02

Joint ci ratio: 1.419064e-01	ci left: 3.413670e-02	ci right 3.939908e-02	k: 734	n:20000
Cons ci ratio: 1.031460e-01	ci left: 6.386583e-02	ci right 7.086059e-02	k: 1346	n:20000
KS ci ratio: 7.320138e-02	ci left: 1.207908e-01	ci right 1.300185e-01	k: 2507	n:20000
PPP1R3D   20000 perm   3 sec   (5994 perm/sec)   p_kst 1.253500e-01   p_cons 6.730000e-02   p_joint 3.670000e-02

Joint ci ratio: 1.388857e-01	ci left: 2.406758e-02	ci right 2.769170e-02	k: 775	n:30000
Cons ci ratio: 8.445447e-02	ci left: 6.416347e-02	ci right 6.985406e-02	k: 2009	n:30000
KS ci ratio: 6.007985e-02	ci left: 1.205207e-01	ci right 1.280189e-01	k: 3727	n:30000
PPP1R3D   30000 perm   5 sec   (5660 perm/sec)   p_kst 1.242333e-01   p_cons 6.696667e-02   p_joint 2.583333e-02

Joint ci ratio: 8.759885e-02	ci left: 4.558280e-02	ci right 4.978318e-02	k: 1906	n:40000
Cons ci ratio: 7.217765e-02	ci left: 6.619091e-02	ci right 7.117192e-02	k: 2746	n:40000
KS ci ratio: 5.187998e-02	ci left: 1.216502e-01	ci right 1.281543e-01	k: 4995	n:40000
PPP1R3D   40000 perm   7 sec   (5448 perm/sec)   p_kst 1.248750e-01   p_cons 6.865000e-02   p_joint 4.765000e-02

Outputting figure to mutsig2_images.part000000000136/PPP1R3D.2_904_40000_0.12487_0.06865_0.04765.png
                gene_name: PPP1R3D
               theta_stop: 0.088 
                    nperm: 40000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.069 
      ci_cons_bounds_left: 0.066 
     ci_cons_bounds_right: 0.071 
                  p_joint: 0.048 
     ci_joint_bounds_left: 0.046 
    ci_joint_bounds_right: 0.050 

Current progress: 74 percent done.
PPP1R9B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.604104e-02	ci left: 8.495769e-01	ci right 8.634147e-01	k: 8566	n:10000
Cons ci ratio: 5.973631e-02	ci left: 2.919197e-01	ci right 3.099964e-01	k: 3009	n:10000
KS ci ratio: 4.377012e-02	ci left: 4.352269e-01	ci right 4.548052e-01	k: 4450	n:10000
PPP1R9B   10000 perm   2 sec   (5645 perm/sec)   p_kst 4.450000e-01   p_cons 3.009000e-01   p_joint 8.566000e-01

Outputting figure to mutsig2_images.part000000000136/PPP1R9B.2_2490_10000_0.445_0.3009_0.8566.png
                gene_name: PPP1R9B
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 77 percent done.
PPP2R1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.692647e-03	ci left: 9.892795e-01	ci right 9.930260e-01	k: 9913	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
PPP2R1B   10000 perm   2 sec   (5554 perm/sec)   p_kst 1   p_cons 9.913000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000136/PPP2R1B.2_2089_10000_1_0.9913_1.png
                gene_name: PPP2R1B
               theta_stop: 0.0037 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
PPP2R2C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.108542e-02	ci left: 7.672937e-01	ci right 7.837455e-01	k: 7756	n:10000
Cons ci ratio: 6.929979e-02	ci left: 2.339280e-01	ci right 2.508223e-01	k: 2423	n:10000
KS ci ratio: 3.270107e-02	ci left: 5.798839e-01	ci right 5.992639e-01	k: 5896	n:10000
PPP2R2C   10000 perm   2 sec   (6381 perm/sec)   p_kst 5.896000e-01   p_cons 2.423000e-01   p_joint 7.756000e-01

Outputting figure to mutsig2_images.part000000000136/PPP2R2C.2_1454_10000_0.5896_0.2423_0.7756.png
                gene_name: PPP2R2C
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 83 percent done.
PPP2R3C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.842512e-01	ci left: 3.929883e-02	ci right 4.736993e-02	k: 432	n:10000
Cons ci ratio: 7.064666e-02	ci left: 2.270141e-01	ci right 2.437403e-01	k: 2353	n:10000
KS ci ratio: 1.842512e-01	ci left: 3.929883e-02	ci right 4.736993e-02	k: 432	n:10000
PPP2R3C   10000 perm   2 sec   (6571 perm/sec)   p_kst 4.320000e-02   p_cons 2.353000e-01   p_joint 4.320000e-02

Joint ci ratio: 1.282881e-01	ci left: 4.173208e-02	ci right 4.750125e-02	k: 891	n:20000
Cons ci ratio: 4.961075e-02	ci left: 2.319627e-01	ci right 2.438136e-01	k: 4757	n:20000
KS ci ratio: 1.282881e-01	ci left: 4.173208e-02	ci right 4.750125e-02	k: 891	n:20000
PPP2R3C   20000 perm   4 sec   (5711 perm/sec)   p_kst 4.455000e-02   p_cons 2.378500e-01   p_joint 4.455000e-02

Joint ci ratio: 1.058706e-01	ci left: 4.138187e-02	ci right 4.604035e-02	k: 1310	n:30000
Cons ci ratio: 4.063789e-02	ci left: 2.318991e-01	ci right 2.415519e-01	k: 7101	n:30000
KS ci ratio: 1.058706e-01	ci left: 4.138187e-02	ci right 4.604035e-02	k: 1310	n:30000
PPP2R3C   30000 perm   6 sec   (5381 perm/sec)   p_kst 4.366667e-02   p_cons 2.367000e-01   p_joint 4.366667e-02

Joint ci ratio: 9.144106e-02	ci left: 4.191296e-02	ci right 4.595359e-02	k: 1756	n:40000
Cons ci ratio: 3.511415e-02	ci left: 2.333612e-01	ci right 2.417269e-01	k: 9501	n:40000
KS ci ratio: 9.144106e-02	ci left: 4.191296e-02	ci right 4.595359e-02	k: 1756	n:40000
PPP2R3C   40000 perm   8 sec   (5161 perm/sec)   p_kst 4.390000e-02   p_cons 2.375250e-01   p_joint 4.390000e-02

Outputting figure to mutsig2_images.part000000000136/PPP2R3C.2_1414_40000_0.0439_0.23752_0.0439.png
                gene_name: PPP2R3C
               theta_stop: 0.091 
                    nperm: 40000 
                     p_ks: 0.044 
        ci_ks_bounds_left: 0.042 
       ci_ks_bounds_right: 0.046 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.044 
     ci_joint_bounds_left: 0.042 
    ci_joint_bounds_right: 0.046 

Current progress: 86 percent done.
PPP2R5A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.418105e-03	ci left: 9.408695e-01	ci right 9.498689e-01	k: 9455	n:10000
KS ci ratio: 8.170639e-02	ci left: 1.793999e-01	ci right 1.947829e-01	k: 1870	n:10000
PPP2R5A   10000 perm   2 sec   (6136 perm/sec)   p_kst 1.870000e-01   p_cons 9.455000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000136/PPP2R5A.2_1513_10000_0.187_0.9455_1.png
                gene_name: PPP2R5A
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
PPP3CC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.638534e-02	ci left: 8.441744e-01	ci right 8.582204e-01	k: 8513	n:10000
KS ci ratio: 2.911097e-02	ci left: 6.350273e-01	ci right 6.538884e-01	k: 6445	n:10000
PPP3CC   10000 perm   2 sec   (6113 perm/sec)   p_kst 6.445000e-01   p_cons 8.513000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000136/PPP3CC.2_1595_10000_0.6445_0.8513_1.png
                gene_name: PPP3CC
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
PPP4R2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.273958e-02	ci left: 4.470006e-01	ci right 4.666246e-01	k: 4568	n:10000
Cons ci ratio: 1.627940e-01	ci left: 5.032338e-02	ci right 5.933816e-02	k: 547	n:10000
KS ci ratio: 3.258635e-02	ci left: 5.815895e-01	ci right 6.009573e-01	k: 5913	n:10000
PPP4R2   10000 perm   2 sec   (6319 perm/sec)   p_kst 5.913000e-01   p_cons 5.470000e-02   p_joint 4.568000e-01

Joint ci ratio: 2.358127e-02	ci left: 5.732237e-01	ci right 5.869530e-01	k: 11602	n:20000
Cons ci ratio: 1.158440e-01	ci left: 5.100488e-02	ci right 5.732553e-02	k: 1082	n:20000
KS ci ratio: 2.331127e-02	ci left: 5.788360e-01	ci right 5.925391e-01	k: 11714	n:20000
PPP4R2   20000 perm   4 sec   (5504 perm/sec)   p_kst 5.857000e-01   p_cons 5.410000e-02   p_joint 5.801000e-01

Joint ci ratio: 9.655212e-03	ci left: 8.418991e-01	ci right 8.501004e-01	k: 25381	n:30000
Cons ci ratio: 9.550719e-02	ci left: 5.062190e-02	ci right 5.573174e-02	k: 1594	n:30000
KS ci ratio: 1.906271e-02	ci left: 5.793664e-01	ci right 5.905505e-01	k: 17549	n:30000
PPP4R2   30000 perm   6 sec   (5201 perm/sec)   p_kst 5.849667e-01   p_cons 5.313333e-02   p_joint 8.460333e-01

Outputting figure to mutsig2_images.part000000000136/PPP4R2.2_1290_30000_0.58497_0.053133_0.84603.png
                gene_name: PPP4R2
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.053 
      ci_cons_bounds_left: 0.051 
     ci_cons_bounds_right: 0.056 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 94 percent done.
PPP4R4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.972311e-02	ci left: 7.899946e-01	ci right 8.058315e-01	k: 7980	n:10000
KS ci ratio: 3.489805e-02	ci left: 5.480002e-01	ci right 5.675661e-01	k: 5578	n:10000
PPP4R4   10000 perm   2 sec   (5109 perm/sec)   p_kst 5.578000e-01   p_cons 7.980000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000136/PPP4R4.2_2795_10000_0.5578_0.798_1.png
                gene_name: PPP4R4
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
PRAC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.176417e-01	ci left: 1.261754e-02	ci right 1.747097e-02	k: 149	n:10000
Cons ci ratio: 1.516850e-01	ci left: 5.783363e-02	ci right 6.742310e-02	k: 625	n:10000
KS ci ratio: 1.276264e-01	ci left: 8.067319e-02	ci right 9.176924e-02	k: 861	n:10000
PRAC   10000 perm   1 sec   (7230 perm/sec)   p_kst 8.610000e-02   p_cons 6.250000e-02   p_joint 1.490000e-02

Joint ci ratio: 1.441613e-01	ci left: 3.307475e-02	ci right 3.826138e-02	k: 712	n:20000
Cons ci ratio: 1.046962e-01	ci left: 6.206076e-02	ci right 6.896621e-02	k: 1309	n:20000
KS ci ratio: 9.129435e-02	ci left: 8.053403e-02	ci right 8.828730e-02	k: 1687	n:20000
PRAC   20000 perm   3 sec   (6205 perm/sec)   p_kst 8.435000e-02   p_cons 6.545000e-02   p_joint 3.560000e-02

Joint ci ratio: 1.046249e-01	ci left: 4.235666e-02	ci right 4.706535e-02	k: 1340	n:30000
Cons ci ratio: 8.576524e-02	ci left: 6.230123e-02	ci right 6.791668e-02	k: 1952	n:30000
KS ci ratio: 7.496317e-02	ci left: 8.039339e-02	ci right 8.668754e-02	k: 2505	n:30000
PRAC   30000 perm   5 sec   (5831 perm/sec)   p_kst 8.350000e-02   p_cons 6.506667e-02   p_joint 4.466667e-02

Joint ci ratio: 1.200213e-01	ci left: 2.441395e-02	ci right 2.755538e-02	k: 1038	n:40000
Cons ci ratio: 7.453572e-02	ci left: 6.225932e-02	ci right 6.710411e-02	k: 2586	n:40000
KS ci ratio: 6.494498e-02	ci left: 8.075756e-02	ci right 8.620309e-02	k: 3338	n:40000
PRAC   40000 perm   7 sec   (5592 perm/sec)   p_kst 8.345000e-02   p_cons 6.465000e-02   p_joint 2.595000e-02

Joint ci ratio: 1.075100e-01	ci left: 2.450586e-02	ci right 2.730955e-02	k: 1294	n:50000
Cons ci ratio: 6.670828e-02	ci left: 6.244098e-02	ci right 6.676974e-02	k: 3229	n:50000
KS ci ratio: 5.793546e-02	ci left: 8.144468e-02	ci right 8.632376e-02	k: 4193	n:50000
PRAC   50000 perm   9 sec   (5404 perm/sec)   p_kst 8.386000e-02   p_cons 6.458000e-02   p_joint 2.588000e-02

Joint ci ratio: 9.856697e-02	ci left: 2.441597e-02	ci right 2.696353e-02	k: 1540	n:60000
Cons ci ratio: 6.078723e-02	ci left: 6.284300e-02	ci right 6.679923e-02	k: 3888	n:60000
KS ci ratio: 5.291522e-02	ci left: 8.157825e-02	ci right 8.602877e-02	k: 5027	n:60000
PRAC   60000 perm   11 sec   (5248 perm/sec)   p_kst 8.378333e-02   p_cons 6.480000e-02   p_joint 2.566667e-02

Outputting figure to mutsig2_images.part000000000136/PRAC.2_182_60000_0.083783_0.0648_0.025667.png
                gene_name: PRAC
               theta_stop: 0.099 
                    nperm: 60000 
                     p_ks: 0.084 
        ci_ks_bounds_left: 0.082 
       ci_ks_bounds_right: 0.086 
                   p_cons: 0.065 
      ci_cons_bounds_left: 0.063 
     ci_cons_bounds_right: 0.067 
                  p_joint: 0.026 
     ci_joint_bounds_left: 0.024 
    ci_joint_bounds_right: 0.027 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000136
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 136 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1710>
Subject: Job 8004439: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1710>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000137> was used as the working directory.
Started at Sun Nov 11 15:14:01 2012
Results reported at Sun Nov 11 16:06:11 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000137.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000137.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 137  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000137.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   3219.55 sec.
    Max Memory :      4649 MB
    Max Swap   :      7149 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
137
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 137
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 137: processing genes 12305 - 12394
Calculating significance of each gene.
Using projection method.
12305	PRAMEF4	5.529483e-01
12306	PRAP1	1
12307	PRB1	2.195971e-01
12308	PRB2	1.000003e-03
12309	PRB3	5.797496e-02
12310	PRB4	1.270257e-01
12311	PRC1	8.672509e-01
12312	PRCC	1
12313	PRCD	1
12314	PRCP	2.662187e-01
12315	PRDM1	3.010908e-01
12316	PRDM10	5.217115e-01
12317	PRDM11	1.022635e-01
12318	PRDM12	1.639004e-01
12319	PRDM13	2.353600e-02
12320	PRDM14	1
12321	PRDM15	8.670241e-01
12322	PRDM16	9.107377e-01
12323	PRDM2	9.960118e-01
12324	PRDM4	1
12325	PRDM5	8.426764e-01
12326	PRDM7	7.303484e-01
12327	PRDM8	1
12328	PRDM9	6.076810e-01
12329	PRDX1	2.454584e-01
12330	PRDX2	1
12331	PRDX3	6.860077e-01
12332	PRDX4	3.766652e-01
12333	PRDX5	1
12334	PRDX6	1.131184e-01
12335	PREB	6.204736e-01
12336	PRELID1	4.322096e-01
12337	PRELID2	1
12338	PRELP	7.359020e-01
12339	PREP	8.540945e-01
12340	PREPL	3.806753e-01
12341	PREX1	1
12342	PREX2	2.068974e-01
12343	PRF1	1
12344	PRG2	1.783222e-01
12345	PRG3	3.409854e-01
12346	PRG4	1
12347	PRH1	4.835605e-01
12348	PRH2	3.052768e-02
12349	PRHOXNB	1
12350	PRIC285	9.152512e-01
12351	PRICKLE1	8.421936e-02
12352	PRICKLE2	9.449769e-01
12353	PRICKLE3	5.373139e-01
12354	PRICKLE4	1
12355	PRIM1	1.076233e-01
12356	PRIM2	4.783237e-03
12357	PRIMA1	8.503680e-02
12358	PRKAA1	1
12359	PRKAA2	3.597891e-02
12360	PRKAB1	1
12361	PRKAB2	3.353707e-01
12362	PRKACA	1
12363	PRKACB	2.738055e-01
12364	PRKACG	6.137506e-01
12365	PRKAG1	1
12366	PRKAG2	4.308286e-01
12367	PRKAG3	2.956930e-01
12368	PRKAR1A	3.189515e-01
12369	PRKAR1B	4.977226e-01
12370	PRKAR2A	1
12371	PRKAR2B	5.087656e-01
12372	PRKCA	1.186087e-01
12373	PRKCB	8.071572e-02
12374	PRKCD	7.816666e-01
12375	PRKCDBP	7.833118e-02
12376	PRKCE	5.732669e-01
12377	PRKCG	5.188106e-02
12378	PRKCH	1
12379	PRKCI	1.256412e-01
12380	PRKCQ	4.602977e-01
12381	PRKCSH	1
12382	PRKCZ	1
12383	PRKD1	4.606796e-01
12384	PRKD2	1
12385	PRKD3	9.167404e-01
12386	PRKDC	9.533260e-01
12387	PRKG1	4.811033e-01
12388	PRKG2	4.320784e-01
12389	PRKRA	6.966185e-01
12390	PRKRIP1	1
12391	PRKRIR	6.190566e-02
12392	PRKX	6.794852e-01
12393	PRL	5.560742e-01
12394	PRLH	1
Done

Running MutSig 2:
Scatter job 137: processing genes 12305 - 12394
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
PREX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.891266e-02	ci left: 3.814188e-01	ci right 4.006447e-01	k: 3910	n:10000
Cons ci ratio: 8.186790e-02	ci left: 1.788095e-01	ci right 1.941736e-01	k: 1864	n:10000
KS ci ratio: 3.853352e-02	ci left: 4.986503e-01	ci right 5.183447e-01	k: 5085	n:10000
PREX2   10000 perm   3 sec   (3656 perm/sec)   p_kst 5.085000e-01   p_cons 1.864000e-01   p_joint 3.910000e-01

Outputting figure to mutsig2_images.part000000000137/PREX2.21_5210_10000_0.5085_0.1864_0.391.png
                gene_name: PREX2
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 2 percent done.
PRIM2
Processing conservation and coverage...
Processing mutations... 
Skipping 2 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.045244e-01	ci left: 4.494298e-03	ci right 7.604055e-03	k: 59	n:10000
Cons ci ratio: 6.775073e-02	ci left: 2.422288e-01	ci right 2.593166e-01	k: 2507	n:10000
KS ci ratio: 1.385306e+00	ci left: 2.814811e-04	ci right 1.441732e-03	k: 7	n:10000
PRIM2   10000 perm   2 sec   (4589 perm/sec)   p_kst 7.000000e-04   p_cons 2.507000e-01   p_joint 5.900000e-03

Joint ci ratio: 4.077371e-01	ci left: 3.664911e-03	ci right 5.583495e-03	k: 91	n:20000
Cons ci ratio: 4.726593e-02	ci left: 2.498136e-01	ci right 2.619574e-01	k: 5117	n:20000
KS ci ratio: 9.795835e-01	ci left: 4.198281e-04	ci right 1.236710e-03	k: 15	n:20000
PRIM2   20000 perm   5 sec   (4187 perm/sec)   p_kst 7.500000e-04   p_cons 2.558500e-01   p_joint 4.550000e-03

Joint ci ratio: 3.913396e-01	ci left: 2.682862e-03	ci right 4.016189e-03	k: 99	n:30000
Cons ci ratio: 3.869417e-02	ci left: 2.499426e-01	ci right 2.598382e-01	k: 7646	n:30000
KS ci ratio: 8.170495e-01	ci left: 4.596314e-04	ci right 1.110066e-03	k: 22	n:30000
PRIM2   30000 perm   7 sec   (4039 perm/sec)   p_kst 7.333333e-04   p_cons 2.548667e-01   p_joint 3.300000e-03

Joint ci ratio: 4.017006e-01	ci left: 1.899444e-03	ci right 2.875048e-03	k: 94	n:40000
Cons ci ratio: 3.353445e-02	ci left: 2.503363e-01	ci right 2.588994e-01	k: 10184	n:40000
KS ci ratio: 7.276527e-01	ci left: 4.651937e-04	ci right 1.011537e-03	k: 28	n:40000
PRIM2   40000 perm   10 sec   (3941 perm/sec)   p_kst 7.000000e-04   p_cons 2.546000e-01   p_joint 2.350000e-03

Joint ci ratio: 3.839838e-01	ci left: 1.681740e-03	ci right 2.497801e-03	k: 103	n:50000
Cons ci ratio: 2.995666e-02	ci left: 2.512635e-01	ci right 2.589250e-01	k: 12754	n:50000
KS ci ratio: 6.441991e-01	ci left: 5.043285e-04	ci right 9.966455e-04	k: 36	n:50000
PRIM2   50000 perm   13 sec   (3851 perm/sec)   p_kst 7.200000e-04   p_cons 2.550800e-01   p_joint 2.060000e-03

Joint ci ratio: 2.474035e-01	ci left: 3.651383e-03	ci right 4.697472e-03	k: 249	n:60000
Cons ci ratio: 2.897736e-02	ci left: 2.303185e-01	ci right 2.371073e-01	k: 14022	n:60000
KS ci ratio: 5.975752e-01	ci left: 5.045436e-04	ci right 9.460802e-04	k: 42	n:60000
PRIM2   60000 perm   16 sec   (3754 perm/sec)   p_kst 7.000000e-04   p_cons 2.337000e-01   p_joint 4.150000e-03

Joint ci ratio: 2.445499e-01	ci left: 3.210095e-03	ci right 4.117528e-03	k: 255	n:70000
Cons ci ratio: 2.676717e-02	ci left: 2.313795e-01	ci right 2.376711e-01	k: 16416	n:70000
KS ci ratio: 5.434004e-01	ci left: 5.425159e-04	ci right 9.578270e-04	k: 51	n:70000
PRIM2   70000 perm   19 sec   (3605 perm/sec)   p_kst 7.285714e-04   p_cons 2.345143e-01   p_joint 3.642857e-03

Joint ci ratio: 2.413184e-01	ci left: 2.890947e-03	ci right 3.695740e-03	k: 262	n:80000
Cons ci ratio: 2.503081e-02	ci left: 2.316919e-01	ci right 2.375773e-01	k: 18770	n:80000
KS ci ratio: 5.145314e-01	ci left: 5.396838e-04	ci right 9.230292e-04	k: 57	n:80000
PRIM2   80000 perm   23 sec   (3479 perm/sec)   p_kst 7.125000e-04   p_cons 2.346250e-01   p_joint 3.275000e-03

Joint ci ratio: 2.559236e-01	ci left: 2.267470e-03	ci right 2.943003e-03	k: 233	n:90000
Cons ci ratio: 2.359809e-02	ci left: 2.318789e-01	ci right 2.374271e-01	k: 21118	n:90000
KS ci ratio: 4.898230e-01	ci left: 5.379398e-04	ci right 8.955165e-04	k: 63	n:90000
PRIM2   90000 perm   26 sec   (3430 perm/sec)   p_kst 7.000000e-04   p_cons 2.346444e-01   p_joint 2.588889e-03

Joint ci ratio: 2.522037e-01	ci left: 2.106243e-03	ci right 2.723185e-03	k: 240	n:100000
Cons ci ratio: 2.240119e-02	ci left: 2.317971e-01	ci right 2.370584e-01	k: 23442	n:100000
KS ci ratio: 4.787414e-01	ci left: 5.104796e-04	ci right 8.396064e-04	k: 66	n:100000
PRIM2   100000 perm   30 sec   (3355 perm/sec)   p_kst 6.600000e-04   p_cons 2.344200e-01   p_joint 2.400000e-03

Joint ci ratio: 2.405124e-01	ci left: 2.119487e-03	ci right 2.707240e-03	k: 264	n:110000
Cons ci ratio: 2.139951e-02	ci left: 2.312379e-01	ci right 2.362489e-01	k: 25711	n:110000
KS ci ratio: 4.683784e-01	ci left: 4.880874e-04	ci right 7.937877e-04	k: 69	n:110000
PRIM2   110000 perm   33 sec   (3310 perm/sec)   p_kst 6.272727e-04   p_cons 2.337364e-01   p_joint 2.400000e-03

Joint ci ratio: 2.291204e-01	ci left: 2.154637e-03	ci right 2.719838e-03	k: 291	n:120000
Cons ci ratio: 2.050444e-02	ci left: 2.310671e-01	ci right 2.358624e-01	k: 28015	n:120000
KS ci ratio: 4.524993e-01	ci left: 4.842460e-04	ci right 7.741076e-04	k: 74	n:120000
PRIM2   120000 perm   38 sec   (3171 perm/sec)   p_kst 6.166667e-04   p_cons 2.334583e-01   p_joint 2.425000e-03

Joint ci ratio: 2.241942e-01	ci left: 2.083209e-03	ci right 2.616300e-03	k: 304	n:130000
Cons ci ratio: 1.970073e-02	ci left: 2.311487e-01	ci right 2.357555e-01	k: 30348	n:130000
KS ci ratio: 4.408987e-01	ci left: 4.743031e-04	ci right 7.487714e-04	k: 78	n:130000
PRIM2   130000 perm   41 sec   (3152 perm/sec)   p_kst 6.000000e-04   p_cons 2.334462e-01   p_joint 2.338462e-03

Joint ci ratio: 2.171892e-01	ci left: 2.069369e-03	ci right 2.580165e-03	k: 324	n:140000
Cons ci ratio: 1.898999e-02	ci left: 2.311222e-01	ci right 2.355603e-01	k: 32667	n:140000
KS ci ratio: 4.275772e-01	ci left: 4.722342e-04	ci right 7.348834e-04	k: 83	n:140000
PRIM2   140000 perm   45 sec   (3091 perm/sec)   p_kst 5.928571e-04   p_cons 2.333357e-01   p_joint 2.314286e-03

Joint ci ratio: 2.086907e-01	ci left: 2.101818e-03	ci right 2.597731e-03	k: 351	n:150000
Cons ci ratio: 1.834862e-02	ci left: 2.311483e-01	ci right 2.354354e-01	k: 34993	n:150000
KS ci ratio: 4.177494e-01	ci left: 4.645815e-04	ci right 7.153794e-04	k: 87	n:150000
PRIM2   150000 perm   49 sec   (3039 perm/sec)   p_kst 5.800000e-04   p_cons 2.332867e-01   p_joint 2.340000e-03

Joint ci ratio: 2.038310e-01	ci left: 2.071214e-03	ci right 2.547108e-03	k: 368	n:160000
Cons ci ratio: 1.777309e-02	ci left: 2.310736e-01	ci right 2.352235e-01	k: 37303	n:160000
KS ci ratio: 4.063656e-01	ci left: 4.635555e-04	ci right 7.051405e-04	k: 92	n:160000
PRIM2   160000 perm   53 sec   (2998 perm/sec)   p_kst 5.750000e-04   p_cons 2.331438e-01   p_joint 2.300000e-03

Joint ci ratio: 2.126922e-01	ci left: 1.782078e-03	ci right 2.211661e-03	k: 338	n:170000
Cons ci ratio: 1.724854e-02	ci left: 2.310097e-01	ci right 2.350347e-01	k: 39613	n:170000
KS ci ratio: 3.938589e-01	ci left: 4.680307e-04	ci right 7.024887e-04	k: 98	n:170000
PRIM2   170000 perm   57 sec   (2978 perm/sec)   p_kst 5.764706e-04   p_cons 2.330176e-01   p_joint 1.988235e-03

Joint ci ratio: 2.090294e-01	ci left: 1.746216e-03	ci right 2.158977e-03	k: 350	n:180000
Cons ci ratio: 1.676862e-02	ci left: 2.309378e-01	ci right 2.348486e-01	k: 41920	n:180000
KS ci ratio: 3.788470e-01	ci left: 4.821584e-04	ci right 7.122002e-04	k: 106	n:180000
PRIM2   180000 perm   61 sec   (2953 perm/sec)   p_kst 5.888889e-04   p_cons 2.328889e-01   p_joint 1.944444e-03

Joint ci ratio: 2.078570e-01	ci left: 1.674257e-03	ci right 2.067506e-03	k: 354	n:190000
Cons ci ratio: 1.631416e-02	ci left: 2.311478e-01	ci right 2.349550e-01	k: 44279	n:190000
KS ci ratio: 3.702950e-01	ci left: 4.806201e-04	ci right 7.034982e-04	k: 111	n:190000
PRIM2   190000 perm   65 sec   (2931 perm/sec)   p_kst 5.842105e-04   p_cons 2.330474e-01   p_joint 1.863158e-03

Joint ci ratio: 2.049944e-01	ci left: 1.637956e-03	ci right 2.016716e-03	k: 364	n:200000
Cons ci ratio: 1.589341e-02	ci left: 2.313681e-01	ci right 2.350797e-01	k: 46644	n:200000
KS ci ratio: 3.592380e-01	ci left: 4.883822e-04	ci right 7.065164e-04	k: 118	n:200000
PRIM2   200000 perm   69 sec   (2910 perm/sec)   p_kst 5.900000e-04   p_cons 2.332200e-01   p_joint 1.820000e-03

Joint ci ratio: 2.061379e-01	ci left: 1.541883e-03	ci right 1.900667e-03	k: 360	n:210000
Cons ci ratio: 1.550919e-02	ci left: 2.314402e-01	ci right 2.350624e-01	k: 48982	n:210000
KS ci ratio: 3.519216e-01	ci left: 4.868088e-04	ci right 6.988006e-04	k: 123	n:210000
PRIM2   210000 perm   73 sec   (2889 perm/sec)   p_kst 5.857143e-04   p_cons 2.332476e-01   p_joint 1.714286e-03

Joint ci ratio: 2.090667e-01	ci left: 1.428697e-03	ci right 1.766471e-03	k: 350	n:220000
Cons ci ratio: 1.516119e-02	ci left: 2.312801e-01	ci right 2.348179e-01	k: 51270	n:220000
KS ci ratio: 3.437044e-01	ci left: 4.895718e-04	ci right 6.966824e-04	k: 129	n:220000
PRIM2   220000 perm   77 sec   (2867 perm/sec)   p_kst 5.863636e-04   p_cons 2.330455e-01   p_joint 1.590909e-03

Joint ci ratio: 2.058680e-01	ci left: 1.411920e-03	ci right 1.739977e-03	k: 361	n:230000
Cons ci ratio: 1.481577e-02	ci left: 2.316118e-01	ci right 2.350732e-01	k: 53668	n:230000
KS ci ratio: 3.277042e-01	ci left: 5.200477e-04	ci right 7.276558e-04	k: 142	n:230000
PRIM2   230000 perm   81 sec   (2844 perm/sec)   p_kst 6.173913e-04   p_cons 2.333391e-01   p_joint 1.569565e-03

Joint ci ratio: 2.009321e-01	ci left: 1.424272e-03	ci right 1.746291e-03	k: 379	n:240000
Cons ci ratio: 1.450796e-02	ci left: 2.315468e-01	ci right 2.349347e-01	k: 55977	n:240000
KS ci ratio: 3.199660e-01	ci left: 5.251755e-04	ci right 7.288658e-04	k: 149	n:240000
PRIM2   240000 perm   85 sec   (2819 perm/sec)   p_kst 6.208333e-04   p_cons 2.332375e-01   p_joint 1.579167e-03

Joint ci ratio: 2.099873e-01	ci left: 1.245871e-03	ci right 1.541883e-03	k: 347	n:250000
Cons ci ratio: 1.421443e-02	ci left: 2.315914e-01	ci right 2.349108e-01	k: 58312	n:250000
KS ci ratio: 3.088392e-01	ci left: 5.446989e-04	ci right 7.471693e-04	k: 160	n:250000
PRIM2   250000 perm   89 sec   (2795 perm/sec)   p_kst 6.400000e-04   p_cons 2.332480e-01   p_joint 1.388000e-03

Joint ci ratio: 1.630102e-01	ci left: 2.038312e-03	ci right 2.403696e-03	k: 576	n:260000
Cons ci ratio: 1.395408e-02	ci left: 2.312226e-01	ci right 2.344756e-01	k: 60540	n:260000
KS ci ratio: 3.005514e-01	ci left: 5.557191e-04	ci right 7.556846e-04	k: 169	n:260000
PRIM2   260000 perm   94 sec   (2771 perm/sec)   p_kst 6.500000e-04   p_cons 2.328462e-01   p_joint 2.215385e-03

Joint ci ratio: 1.634433e-01	ci left: 1.952154e-03	ci right 2.303115e-03	k: 573	n:270000
Cons ci ratio: 1.369415e-02	ci left: 2.312291e-01	ci right 2.344211e-01	k: 62862	n:270000
KS ci ratio: 2.962276e-01	ci left: 5.522692e-04	ci right 7.475972e-04	k: 174	n:270000
PRIM2   270000 perm   98 sec   (2747 perm/sec)   p_kst 6.444444e-04   p_cons 2.328222e-01   p_joint 2.122222e-03

Joint ci ratio: 1.666814e-01	ci left: 1.807097e-03	ci right 2.139061e-03	k: 551	n:280000
Cons ci ratio: 1.344192e-02	ci left: 2.314031e-01	ci right 2.345382e-01	k: 65231	n:280000
KS ci ratio: 2.857989e-01	ci left: 5.755871e-04	ci right 7.707030e-04	k: 187	n:280000
PRIM2   280000 perm   103 sec   (2722 perm/sec)   p_kst 6.678571e-04   p_cons 2.329679e-01   p_joint 1.967857e-03

Joint ci ratio: 1.685325e-01	ci left: 1.705132e-03	ci right 2.022197e-03	k: 539	n:290000
Cons ci ratio: 1.320631e-02	ci left: 2.314796e-01	ci right 2.345603e-01	k: 67575	n:290000
KS ci ratio: 2.820734e-01	ci left: 5.717529e-04	ci right 7.625931e-04	k: 192	n:290000
PRIM2   290000 perm   107 sec   (2699 perm/sec)   p_kst 6.620690e-04   p_cons 2.330172e-01   p_joint 1.858621e-03

Joint ci ratio: 1.662405e-01	ci left: 1.696199e-03	ci right 2.006884e-03	k: 554	n:300000
Cons ci ratio: 1.298521e-02	ci left: 2.314815e-01	ci right 2.345103e-01	k: 69898	n:300000
KS ci ratio: 2.784899e-01	ci left: 5.681897e-04	ci right 7.550086e-04	k: 197	n:300000
PRIM2   300000 perm   112 sec   (2675 perm/sec)   p_kst 6.566667e-04   p_cons 2.329933e-01   p_joint 1.846667e-03

Joint ci ratio: 1.649113e-01	ci left: 1.669310e-03	ci right 1.972382e-03	k: 563	n:310000
Cons ci ratio: 1.277716e-02	ci left: 2.314194e-01	ci right 2.343985e-01	k: 72201	n:310000
KS ci ratio: 2.757199e-01	ci left: 5.618674e-04	ci right 7.444515e-04	k: 201	n:310000
PRIM2   310000 perm   117 sec   (2652 perm/sec)   p_kst 6.483871e-04   p_cons 2.329065e-01   p_joint 1.816129e-03

Joint ci ratio: 1.617851e-01	ci left: 1.683085e-03	ci right 1.982302e-03	k: 585	n:320000
Cons ci ratio: 1.257562e-02	ci left: 2.314520e-01	ci right 2.343841e-01	k: 74533	n:320000
KS ci ratio: 2.697745e-01	ci left: 5.705114e-04	ci right 7.512303e-04	k: 210	n:320000
PRIM2   320000 perm   122 sec   (2629 perm/sec)   p_kst 6.562500e-04   p_cons 2.329156e-01   p_joint 1.828125e-03

Joint ci ratio: 1.588302e-01	ci left: 1.696076e-03	ci right 1.991570e-03	k: 607	n:330000
Cons ci ratio: 1.239162e-02	ci left: 2.312440e-01	ci right 2.341304e-01	k: 76786	n:330000
KS ci ratio: 2.654078e-01	ci left: 5.730125e-04	ci right 7.510974e-04	k: 217	n:330000
PRIM2   330000 perm   127 sec   (2605 perm/sec)   p_kst 6.575758e-04   p_cons 2.326848e-01   p_joint 1.839394e-03

Joint ci ratio: 1.594929e-01	ci left: 1.632067e-03	ci right 1.917709e-03	k: 602	n:340000
Cons ci ratio: 1.220611e-02	ci left: 2.313216e-01	ci right 2.341653e-01	k: 79132	n:340000
KS ci ratio: 2.561698e-01	ci left: 6.001440e-04	ci right 7.791320e-04	k: 233	n:340000
PRIM2   340000 perm   132 sec   (2581 perm/sec)   p_kst 6.852941e-04   p_cons 2.327412e-01   p_joint 1.770588e-03

Joint ci ratio: 1.622143e-01	ci left: 1.530587e-03	ci right 1.803484e-03	k: 582	n:350000
Cons ci ratio: 1.202888e-02	ci left: 2.313893e-01	ci right 2.341923e-01	k: 81476	n:350000
KS ci ratio: 2.545448e-01	ci left: 5.910195e-04	ci right 7.659905e-04	k: 236	n:350000
PRIM2   350000 perm   137 sec   (2558 perm/sec)   p_kst 6.742857e-04   p_cons 2.327886e-01   p_joint 1.662857e-03

Joint ci ratio: 1.329696e-01	ci left: 2.248161e-03	ci right 2.571043e-03	k: 866	n:360000
Cons ci ratio: 1.186164e-02	ci left: 2.313787e-01	ci right 2.341423e-01	k: 83793	n:360000
KS ci ratio: 2.498443e-01	ci left: 5.980226e-04	ci right 7.712893e-04	k: 245	n:360000
PRIM2   360000 perm   142 sec   (2536 perm/sec)   p_kst 6.805556e-04   p_cons 2.327583e-01   p_joint 2.405556e-03

Joint ci ratio: 1.357485e-01	ci left: 2.095974e-03	ci right 2.403797e-03	k: 831	n:370000
Cons ci ratio: 1.169959e-02	ci left: 2.314174e-01	ci right 2.341435e-01	k: 86128	n:370000
KS ci ratio: 2.478385e-01	ci left: 5.919963e-04	ci right 7.619276e-04	k: 249	n:370000
PRIM2   370000 perm   147 sec   (2515 perm/sec)   p_kst 6.729730e-04   p_cons 2.327784e-01   p_joint 2.245946e-03

Joint ci ratio: 1.337534e-01	ci left: 2.104389e-03	ci right 2.408544e-03	k: 856	n:380000
Cons ci ratio: 1.154606e-02	ci left: 2.313914e-01	ci right 2.340811e-01	k: 88439	n:380000
KS ci ratio: 2.425582e-01	ci left: 6.035869e-04	ci right 7.725986e-04	k: 260	n:380000
PRIM2   380000 perm   152 sec   (2493 perm/sec)   p_kst 6.842105e-04   p_cons 2.327342e-01   p_joint 2.252632e-03

Joint ci ratio: 1.352684e-01	ci left: 2.003344e-03	ci right 2.296439e-03	k: 837	n:390000
Cons ci ratio: 1.139293e-02	ci left: 2.315383e-01	ci right 2.341939e-01	k: 90817	n:390000
KS ci ratio: 2.398177e-01	ci left: 6.025652e-04	ci right 7.691010e-04	k: 266	n:390000
PRIM2   390000 perm   158 sec   (2472 perm/sec)   p_kst 6.820513e-04   p_cons 2.328641e-01   p_joint 2.146154e-03

Joint ci ratio: 1.373404e-01	ci left: 1.892884e-03	ci right 2.174407e-03	k: 812	n:400000
Cons ci ratio: 1.125479e-02	ci left: 2.313912e-01	ci right 2.340127e-01	k: 93080	n:400000
KS ci ratio: 2.376038e-01	ci left: 5.992534e-04	ci right 7.631199e-04	k: 271	n:400000
PRIM2   400000 perm   163 sec   (2450 perm/sec)   p_kst 6.775000e-04   p_cons 2.327000e-01   p_joint 2.030000e-03

Joint ci ratio: 1.486750e-01	ci left: 1.566821e-03	ci right 1.820792e-03	k: 693	n:410000
Cons ci ratio: 1.111373e-02	ci left: 2.315022e-01	ci right 2.340918e-01	k: 95446	n:410000
KS ci ratio: 2.354501e-01	ci left: 5.961098e-04	ci right 7.574239e-04	k: 276	n:410000
PRIM2   410000 perm   169 sec   (2428 perm/sec)   p_kst 6.731707e-04   p_cons 2.327951e-01   p_joint 1.690244e-03

Joint ci ratio: 1.473025e-01	ci left: 1.559322e-03	ci right 1.809538e-03	k: 706	n:420000
Cons ci ratio: 1.097974e-02	ci left: 2.315463e-01	ci right 2.341050e-01	k: 97786	n:420000
KS ci ratio: 2.341864e-01	ci left: 5.886391e-04	ci right 7.469527e-04	k: 279	n:420000
PRIM2   420000 perm   174 sec   (2407 perm/sec)   p_kst 6.642857e-04   p_cons 2.328238e-01   p_joint 1.680952e-03

Joint ci ratio: 1.465803e-01	ci left: 1.538738e-03	ci right 1.784335e-03	k: 713	n:430000
Cons ci ratio: 1.085226e-02	ci left: 2.315305e-01	ci right 2.340591e-01	k: 100101	n:430000
KS ci ratio: 2.317171e-01	ci left: 5.880889e-04	ci right 7.443481e-04	k: 285	n:430000
PRIM2   430000 perm   180 sec   (2386 perm/sec)   p_kst 6.627907e-04   p_cons 2.327930e-01   p_joint 1.658140e-03

Joint ci ratio: 1.449651e-01	ci left: 1.538804e-03	ci right 1.781471e-03	k: 729	n:440000
Cons ci ratio: 1.072843e-02	ci left: 2.315383e-01	ci right 2.340380e-01	k: 102426	n:440000
KS ci ratio: 2.289323e-01	ci left: 5.897145e-04	ci right 7.442565e-04	k: 292	n:440000
PRIM2   440000 perm   186 sec   (2365 perm/sec)   p_kst 6.636364e-04   p_cons 2.327864e-01   p_joint 1.656818e-03

Joint ci ratio: 1.431143e-01	ci left: 1.545309e-03	ci right 1.785625e-03	k: 748	n:450000
Cons ci ratio: 1.060881e-02	ci left: 2.315437e-01	ci right 2.340153e-01	k: 104750	n:450000
KS ci ratio: 2.247512e-01	ci left: 5.996657e-04	ci right 7.535480e-04	k: 303	n:450000
PRIM2   450000 perm   192 sec   (2344 perm/sec)   p_kst 6.733333e-04   p_cons 2.327778e-01   p_joint 1.662222e-03

Joint ci ratio: 1.423574e-01	ci left: 1.528485e-03	ci right 1.764820e-03	k: 756	n:460000
Cons ci ratio: 1.049017e-02	ci left: 2.316488e-01	ci right 2.340937e-01	k: 107120	n:460000
KS ci ratio: 2.211426e-01	ci left: 6.071550e-04	ci right 7.601173e-04	k: 313	n:460000
PRIM2   460000 perm   198 sec   (2324 perm/sec)   p_kst 6.804348e-04   p_cons 2.328696e-01   p_joint 1.643478e-03

Joint ci ratio: 1.404223e-01	ci left: 1.539065e-03	ci right 1.773530e-03	k: 777	n:470000
Cons ci ratio: 1.037752e-02	ci left: 2.316773e-01	ci right 2.340962e-01	k: 109456	n:470000
KS ci ratio: 2.180394e-01	ci left: 6.123328e-04	ci right 7.641448e-04	k: 322	n:470000
PRIM2   470000 perm   204 sec   (2305 perm/sec)   p_kst 6.851064e-04   p_cons 2.328851e-01   p_joint 1.653191e-03

Joint ci ratio: 1.128306e-01	ci left: 2.366771e-03	ci right 2.651787e-03	k: 1203	n:480000
Cons ci ratio: 1.027226e-02	ci left: 2.315717e-01	ci right 2.339648e-01	k: 111728	n:480000
KS ci ratio: 2.160423e-01	ci left: 6.113963e-04	ci right 7.614036e-04	k: 328	n:480000
PRIM2   480000 perm   210 sec   (2285 perm/sec)   p_kst 6.833333e-04   p_cons 2.327667e-01   p_joint 2.506250e-03

Joint ci ratio: 1.127397e-01	ci left: 2.322433e-03	ci right 2.601869e-03	k: 1205	n:490000
Cons ci ratio: 1.016491e-02	ci left: 2.316539e-01	ci right 2.340227e-01	k: 114090	n:490000
KS ci ratio: 2.134623e-01	ci left: 6.143674e-04	ci right 7.630679e-04	k: 336	n:490000
PRIM2   490000 perm   216 sec   (2267 perm/sec)   p_kst 6.857143e-04   p_cons 2.328367e-01   p_joint 2.459184e-03

Joint ci ratio: 1.135475e-01	ci left: 2.242942e-03	ci right 2.514876e-03	k: 1188	n:500000
Cons ci ratio: 1.006164e-02	ci left: 2.317050e-01	ci right 2.340501e-01	k: 116438	n:500000
KS ci ratio: 2.112793e-01	ci left: 6.153355e-04	ci right 7.625500e-04	k: 343	n:500000
PRIM2   500000 perm   222 sec   (2249 perm/sec)   p_kst 6.860000e-04   p_cons 2.328760e-01   p_joint 2.376000e-03

Joint ci ratio: 1.139350e-01	ci left: 2.183719e-03	ci right 2.449437e-03	k: 1180	n:510000
Cons ci ratio: 9.961296e-03	ci left: 2.317601e-01	ci right 2.340822e-01	k: 118789	n:510000
KS ci ratio: 2.094607e-01	ci left: 6.144150e-04	ci right 7.599817e-04	k: 349	n:510000
PRIM2   510000 perm   229 sec   (2230 perm/sec)   p_kst 6.843137e-04   p_cons 2.329196e-01   p_joint 2.313725e-03

Joint ci ratio: 1.135049e-01	ci left: 2.158538e-03	ci right 2.420134e-03	k: 1189	n:520000
Cons ci ratio: 9.868300e-03	ci left: 2.316538e-01	ci right 2.339530e-01	k: 121057	n:520000
KS ci ratio: 2.076883e-01	ci left: 6.135351e-04	ci right 7.575070e-04	k: 355	n:520000
PRIM2   520000 perm   235 sec   (2210 perm/sec)   p_kst 6.826923e-04   p_cons 2.328019e-01   p_joint 2.286538e-03

Joint ci ratio: 1.121460e-01	ci left: 2.170984e-03	ci right 2.430730e-03	k: 1218	n:530000
Cons ci ratio: 9.773988e-03	ci left: 2.316929e-01	ci right 2.339704e-01	k: 123400	n:530000
KS ci ratio: 2.065318e-01	ci left: 6.091146e-04	ci right 7.511527e-04	k: 359	n:530000
PRIM2   530000 perm   242 sec   (2192 perm/sec)   p_kst 6.773585e-04   p_cons 2.328302e-01   p_joint 2.298113e-03

Joint ci ratio: 1.122407e-01	ci left: 2.127179e-03	ci right 2.381913e-03	k: 1216	n:540000
Cons ci ratio: 9.683432e-03	ci left: 2.316900e-01	ci right 2.339462e-01	k: 125721	n:540000
KS ci ratio: 2.048320e-01	ci left: 6.083735e-04	ci right 7.489251e-04	k: 365	n:540000
PRIM2   540000 perm   248 sec   (2174 perm/sec)   p_kst 6.759259e-04   p_cons 2.328167e-01   p_joint 2.251852e-03

Joint ci ratio: 1.111949e-01	ci left: 2.129152e-03	ci right 2.381591e-03	k: 1239	n:550000
Cons ci ratio: 9.590955e-03	ci left: 2.318506e-01	ci right 2.340868e-01	k: 128132	n:550000
KS ci ratio: 2.029009e-01	ci left: 6.093898e-04	ci right 7.486843e-04	k: 372	n:550000
PRIM2   550000 perm   255 sec   (2156 perm/sec)   p_kst 6.763636e-04   p_cons 2.329673e-01   p_joint 2.252727e-03

Joint ci ratio: 1.120608e-01	ci left: 2.058146e-03	ci right 2.304192e-03	k: 1220	n:560000
Cons ci ratio: 9.500744e-03	ci left: 2.320181e-01	ci right 2.342347e-01	k: 130550	n:560000
KS ci ratio: 1.999729e-01	ci left: 6.171603e-04	ci right 7.559469e-04	k: 383	n:560000
PRIM2   560000 perm   262 sec   (2138 perm/sec)   p_kst 6.839286e-04   p_cons 2.331250e-01   p_joint 2.178571e-03

Joint ci ratio: 1.129000e-01	ci left: 1.991344e-03	ci right 2.231305e-03	k: 1202	n:570000
Cons ci ratio: 9.415246e-03	ci left: 2.320957e-01	ci right 2.342930e-01	k: 132920	n:570000
KS ci ratio: 1.981747e-01	ci left: 6.180015e-04	ci right 7.555766e-04	k: 390	n:570000
PRIM2   570000 perm   269 sec   (2120 perm/sec)   p_kst 6.842105e-04   p_cons 2.331930e-01   p_joint 2.108772e-03

Joint ci ratio: 1.120191e-01	ci left: 1.988848e-03	ci right 2.226514e-03	k: 1221	n:580000
Cons ci ratio: 9.332555e-03	ci left: 2.321501e-01	ci right 2.343285e-01	k: 135278	n:580000
KS ci ratio: 1.969200e-01	ci left: 6.155405e-04	ci right 7.515961e-04	k: 395	n:580000
PRIM2   580000 perm   276 sec   (2102 perm/sec)   p_kst 6.810345e-04   p_cons 2.332379e-01   p_joint 2.105172e-03

Joint ci ratio: 1.121131e-01	ci left: 1.951841e-03	ci right 2.185295e-03	k: 1219	n:590000
Cons ci ratio: 9.256215e-03	ci left: 2.320402e-01	ci right 2.341997e-01	k: 137540	n:590000
KS ci ratio: 1.952022e-01	ci left: 6.163897e-04	ci right 7.513032e-04	k: 402	n:590000
PRIM2   590000 perm   283 sec   (2086 perm/sec)   p_kst 6.813559e-04   p_cons 2.331186e-01   p_joint 2.066102e-03

Joint ci ratio: 1.128590e-01	ci left: 1.893391e-03	ci right 2.121460e-03	k: 1203	n:600000
Cons ci ratio: 9.178594e-03	ci left: 2.320556e-01	ci right 2.341970e-01	k: 139875	n:600000
KS ci ratio: 1.930581e-01	ci left: 6.203876e-04	ci right 7.545095e-04	k: 411	n:600000
PRIM2   600000 perm   290 sec   (2070 perm/sec)   p_kst 6.850000e-04   p_cons 2.331250e-01   p_joint 2.005000e-03

Joint ci ratio: 1.120249e-01	ci left: 1.891030e-03	ci right 2.117020e-03	k: 1221	n:610000
Cons ci ratio: 9.099805e-03	ci left: 2.321916e-01	ci right 2.343158e-01	k: 142284	n:610000
KS ci ratio: 1.916676e-01	ci left: 6.195797e-04	ci right 7.524497e-04	k: 417	n:610000
PRIM2   610000 perm   297 sec   (2055 perm/sec)   p_kst 6.836066e-04   p_cons 2.332525e-01   p_joint 2.001639e-03

Joint ci ratio: 1.109404e-01	ci left: 1.898160e-03	ci right 2.122663e-03	k: 1245	n:620000
Cons ci ratio: 9.026754e-03	ci left: 2.321752e-01	ci right 2.342821e-01	k: 144601	n:620000
KS ci ratio: 1.898592e-01	ci left: 6.218735e-04	ci right 7.538321e-04	k: 425	n:620000
PRIM2   620000 perm   304 sec   (2040 perm/sec)   p_kst 6.854839e-04   p_cons 2.332274e-01   p_joint 2.008065e-03

Joint ci ratio: 1.102353e-01	ci left: 1.892725e-03	ci right 2.115069e-03	k: 1261	n:630000
Cons ci ratio: 8.956627e-03	ci left: 2.321119e-01	ci right 2.342017e-01	k: 146888	n:630000
KS ci ratio: 1.885363e-01	ci left: 6.210752e-04	ci right 7.518409e-04	k: 431	n:630000
PRIM2   630000 perm   311 sec   (2025 perm/sec)   p_kst 6.841270e-04   p_cons 2.331556e-01   p_joint 2.001587e-03

Joint ci ratio: 1.094148e-01	ci left: 1.892023e-03	ci right 2.112524e-03	k: 1280	n:640000
Cons ci ratio: 8.885818e-03	ci left: 2.321426e-01	ci right 2.342161e-01	k: 149234	n:640000
KS ci ratio: 1.866022e-01	ci left: 6.247732e-04	ci right 7.548153e-04	k: 440	n:640000
PRIM2   640000 perm   318 sec   (2010 perm/sec)   p_kst 6.875000e-04   p_cons 2.331781e-01   p_joint 2.000000e-03

Joint ci ratio: 1.119860e-01	ci left: 1.776148e-03	ci right 1.988330e-03	k: 1222	n:650000
Cons ci ratio: 8.814197e-03	ci left: 2.322723e-01	ci right 2.343301e-01	k: 151645	n:650000
KS ci ratio: 1.853457e-01	ci left: 6.239624e-04	ci right 7.528628e-04	k: 446	n:650000
PRIM2   650000 perm   326 sec   (1993 perm/sec)   p_kst 6.861538e-04   p_cons 2.333000e-01   p_joint 1.880000e-03

Joint ci ratio: 1.169806e-01	ci left: 1.599106e-03	ci right 1.799248e-03	k: 1120	n:660000
Cons ci ratio: 8.746576e-03	ci left: 2.323043e-01	ci right 2.343465e-01	k: 153994	n:660000
KS ci ratio: 1.847274e-01	ci left: 6.188431e-04	ci right 7.462118e-04	k: 449	n:660000
PRIM2   660000 perm   334 sec   (1978 perm/sec)   p_kst 6.803030e-04   p_cons 2.333242e-01   p_joint 1.696970e-03

Joint ci ratio: 1.158489e-01	ci left: 1.607119e-03	ci right 1.806184e-03	k: 1142	n:670000
Cons ci ratio: 8.683820e-03	ci left: 2.321983e-01	ci right 2.342249e-01	k: 156251	n:670000
KS ci ratio: 1.821148e-01	ci left: 6.281191e-04	ci right 7.553668e-04	k: 462	n:670000
PRIM2   670000 perm   341 sec   (1963 perm/sec)   p_kst 6.895522e-04   p_cons 2.332104e-01   p_joint 1.704478e-03

Joint ci ratio: 1.149969e-01	ci left: 1.607763e-03	ci right 1.805344e-03	k: 1159	n:680000
Cons ci ratio: 8.620729e-03	ci left: 2.321645e-01	ci right 2.341760e-01	k: 158555	n:680000
KS ci ratio: 1.809462e-01	ci left: 6.273046e-04	ci right 7.534825e-04	k: 468	n:680000
PRIM2   680000 perm   349 sec   (1948 perm/sec)   p_kst 6.882353e-04   p_cons 2.331691e-01   p_joint 1.704412e-03

Joint ci ratio: 1.146031e-01	ci left: 1.595723e-03	ci right 1.791107e-03	k: 1167	n:690000
Cons ci ratio: 8.557120e-03	ci left: 2.322099e-01	ci right 2.342069e-01	k: 160913	n:690000
KS ci ratio: 1.805623e-01	ci left: 6.209805e-04	ci right 7.455923e-04	k: 470	n:690000
PRIM2   690000 perm   357 sec   (1934 perm/sec)   p_kst 6.811594e-04   p_cons 2.332072e-01   p_joint 1.691304e-03

Joint ci ratio: 1.140677e-01	ci left: 1.588192e-03	ci right 1.781684e-03	k: 1178	n:700000
Cons ci ratio: 8.496460e-03	ci left: 2.321884e-01	ci right 2.341710e-01	k: 163225	n:700000
KS ci ratio: 1.796117e-01	ci left: 6.189301e-04	ci right 7.424056e-04	k: 475	n:700000
PRIM2   700000 perm   365 sec   (1920 perm/sec)   p_kst 6.785714e-04   p_cons 2.331786e-01   p_joint 1.682857e-03

Joint ci ratio: 1.133967e-01	ci left: 1.584980e-03	ci right 1.776869e-03	k: 1192	n:710000
Cons ci ratio: 8.437370e-03	ci left: 2.321549e-01	ci right 2.341233e-01	k: 165528	n:710000
KS ci ratio: 1.784904e-01	ci left: 6.182847e-04	ci right 7.407782e-04	k: 481	n:710000
PRIM2   710000 perm   372 sec   (1906 perm/sec)   p_kst 6.774648e-04   p_cons 2.331380e-01   p_joint 1.678873e-03

Joint ci ratio: 1.131135e-01	ci left: 1.571063e-03	ci right 1.760760e-03	k: 1198	n:720000
Cons ci ratio: 8.380897e-03	ci left: 2.320627e-01	ci right 2.340172e-01	k: 167788	n:720000
KS ci ratio: 1.770272e-01	ci left: 6.203143e-04	ci right 7.420946e-04	k: 489	n:720000
PRIM2   720000 perm   380 sec   (1893 perm/sec)   p_kst 6.791667e-04   p_cons 2.330389e-01   p_joint 1.663889e-03

Joint ci ratio: 1.132094e-01	ci left: 1.546878e-03	ci right 1.733824e-03	k: 1196	n:730000
Cons ci ratio: 8.323531e-03	ci left: 2.320593e-01	ci right 2.340003e-01	k: 170111	n:730000
KS ci ratio: 1.752476e-01	ci left: 6.249116e-04	ci right 7.462307e-04	k: 499	n:730000
PRIM2   730000 perm   389 sec   (1878 perm/sec)   p_kst 6.835616e-04   p_cons 2.330288e-01   p_joint 1.638356e-03

Joint ci ratio: 1.122750e-01	ci left: 1.552240e-03	ci right 1.738183e-03	k: 1216	n:740000
Cons ci ratio: 8.268547e-03	ci left: 2.320035e-01	ci right 2.339311e-01	k: 172395	n:740000
KS ci ratio: 1.745511e-01	ci left: 6.216356e-04	ci right 7.417884e-04	k: 503	n:740000
PRIM2   740000 perm   397 sec   (1865 perm/sec)   p_kst 6.797297e-04   p_cons 2.329662e-01   p_joint 1.643243e-03

Joint ci ratio: 1.114989e-01	ci left: 1.553575e-03	ci right 1.738308e-03	k: 1233	n:750000
Cons ci ratio: 8.213137e-03	ci left: 2.320143e-01	ci right 2.339291e-01	k: 174728	n:750000
KS ci ratio: 1.738628e-01	ci left: 6.184478e-04	ci right 7.374636e-04	k: 507	n:750000
PRIM2   750000 perm   405 sec   (1853 perm/sec)   p_kst 6.760000e-04   p_cons 2.329707e-01   p_joint 1.644000e-03

Joint ci ratio: 1.037094e-01	ci left: 1.778985e-03	ci right 1.974843e-03	k: 1425	n:760000
Cons ci ratio: 8.161139e-03	ci left: 2.319238e-01	ci right 2.338256e-01	k: 176984	n:760000
KS ci ratio: 1.730137e-01	ci left: 6.166036e-04	ci right 7.346245e-04	k: 512	n:760000
PRIM2   760000 perm   413 sec   (1840 perm/sec)   p_kst 6.736842e-04   p_cons 2.328737e-01   p_joint 1.875000e-03

Joint ci ratio: 1.036016e-01	ci left: 1.759676e-03	ci right 1.953194e-03	k: 1428	n:770000
Cons ci ratio: 8.107729e-03	ci left: 2.319407e-01	ci right 2.338301e-01	k: 179321	n:770000
KS ci ratio: 1.720108e-01	ci left: 6.160515e-04	ci right 7.332123e-04	k: 518	n:770000
PRIM2   770000 perm   421 sec   (1827 perm/sec)   p_kst 6.727273e-04   p_cons 2.328844e-01   p_joint 1.854545e-03

Joint ci ratio: 1.031697e-01	ci left: 1.752102e-03	ci right 1.943935e-03	k: 1440	n:780000
Cons ci ratio: 8.056133e-03	ci left: 2.319226e-01	ci right 2.337999e-01	k: 181631	n:780000
KS ci ratio: 1.703769e-01	ci left: 6.204248e-04	ci right 7.371813e-04	k: 528	n:780000
PRIM2   780000 perm   430 sec   (1815 perm/sec)   p_kst 6.769231e-04   p_cons 2.328603e-01   p_joint 1.846154e-03

Joint ci ratio: 1.022858e-01	ci left: 1.760757e-03	ci right 1.951786e-03	k: 1465	n:790000
Cons ci ratio: 8.004887e-03	ci left: 2.319329e-01	ci right 2.337982e-01	k: 183963	n:790000
KS ci ratio: 1.691029e-01	ci left: 6.222677e-04	ci right 7.384062e-04	k: 536	n:790000
PRIM2   790000 perm   438 sec   (1803 perm/sec)   p_kst 6.784810e-04   p_cons 2.328646e-01   p_joint 1.854430e-03

Joint ci ratio: 1.019393e-01	ci left: 1.750927e-03	ci right 1.940209e-03	k: 1475	n:800000
Cons ci ratio: 7.954717e-03	ci left: 2.319379e-01	ci right 2.337915e-01	k: 186291	n:800000
KS ci ratio: 1.681661e-01	ci left: 6.216728e-04	ci right 7.369924e-04	k: 542	n:800000
PRIM2   800000 perm   447 sec   (1791 perm/sec)   p_kst 6.775000e-04   p_cons 2.328638e-01   p_joint 1.843750e-03

Joint ci ratio: 1.012894e-01	ci left: 1.752172e-03	ci right 1.940308e-03	k: 1494	n:810000
Cons ci ratio: 7.904879e-03	ci left: 2.319700e-01	ci right 2.338122e-01	k: 188641	n:810000
KS ci ratio: 1.672447e-01	ci left: 6.210944e-04	ci right 7.356117e-04	k: 548	n:810000
PRIM2   810000 perm   455 sec   (1779 perm/sec)   p_kst 6.765432e-04   p_cons 2.328901e-01   p_joint 1.844444e-03

Joint ci ratio: 1.006518e-01	ci left: 1.753389e-03	ci right 1.940402e-03	k: 1513	n:820000
Cons ci ratio: 7.857493e-03	ci left: 2.319319e-01	ci right 2.337627e-01	k: 190934	n:820000
KS ci ratio: 1.660392e-01	ci left: 6.228693e-04	ci right 7.368034e-04	k: 556	n:820000
PRIM2   820000 perm   464 sec   (1767 perm/sec)   p_kst 6.780488e-04   p_cons 2.328463e-01   p_joint 1.845122e-03

Joint ci ratio: 1.008198e-01	ci left: 1.726391e-03	ci right 1.910849e-03	k: 1508	n:830000
Cons ci ratio: 7.810397e-03	ci left: 2.319200e-01	ci right 2.337397e-01	k: 193248	n:830000
KS ci ratio: 1.654465e-01	ci left: 6.199842e-04	ci right 7.329454e-04	k: 560	n:830000
PRIM2   830000 perm   473 sec   (1756 perm/sec)   p_kst 6.746988e-04   p_cons 2.328289e-01   p_joint 1.816867e-03

Joint ci ratio: 1.003887e-01	ci left: 1.720925e-03	ci right 1.903966e-03	k: 1521	n:840000
Cons ci ratio: 7.762249e-03	ci left: 2.319952e-01	ci right 2.338042e-01	k: 195635	n:840000
KS ci ratio: 1.645689e-01	ci left: 6.194513e-04	ci right 7.316574e-04	k: 566	n:840000
PRIM2   840000 perm   482 sec   (1744 perm/sec)   p_kst 6.738095e-04   p_cons 2.328988e-01   p_joint 1.810714e-03

Joint ci ratio: 9.983274e-02	ci left: 1.720178e-03	ci right 1.902067e-03	k: 1538	n:850000
Cons ci ratio: 7.716962e-03	ci left: 2.319771e-01	ci right 2.337753e-01	k: 197944	n:850000
KS ci ratio: 1.635623e-01	ci left: 6.200608e-04	ci right 7.316228e-04	k: 573	n:850000
PRIM2   850000 perm   491 sec   (1733 perm/sec)   p_kst 6.741176e-04   p_cons 2.328753e-01   p_joint 1.809412e-03

Joint ci ratio: 9.934993e-02	ci left: 1.717183e-03	ci right 1.897827e-03	k: 1553	n:860000
Cons ci ratio: 7.672958e-03	ci left: 2.319362e-01	ci right 2.337238e-01	k: 200233	n:860000
KS ci ratio: 1.628547e-01	ci left: 6.184272e-04	ci right 7.291668e-04	k: 578	n:860000
PRIM2   860000 perm   499 sec   (1722 perm/sec)   p_kst 6.720930e-04   p_cons 2.328291e-01   p_joint 1.805814e-03

Joint ci ratio: 9.877950e-02	ci left: 1.717623e-03	ci right 1.897215e-03	k: 1571	n:870000
Cons ci ratio: 7.627170e-03	ci left: 2.320144e-01	ci right 2.337919e-01	k: 202625	n:870000
KS ci ratio: 1.618791e-01	ci left: 6.190379e-04	ci right 7.291582e-04	k: 585	n:870000
PRIM2   870000 perm   508 sec   (1711 perm/sec)   p_kst 6.724138e-04   p_cons 2.329023e-01   p_joint 1.805747e-03

Joint ci ratio: 9.846726e-02	ci left: 1.709187e-03	ci right 1.887300e-03	k: 1581	n:880000
Cons ci ratio: 7.582915e-03	ci left: 2.320569e-01	ci right 2.338244e-01	k: 204987	n:880000
KS ci ratio: 1.610567e-01	ci left: 6.185461e-04	ci right 7.279658e-04	k: 591	n:880000
PRIM2   880000 perm   518 sec   (1700 perm/sec)   p_kst 6.715909e-04   p_cons 2.329398e-01   p_joint 1.796591e-03

Joint ci ratio: 9.754604e-02	ci left: 1.722865e-03	ci right 1.900627e-03	k: 1611	n:890000
Cons ci ratio: 7.539777e-03	ci left: 2.320816e-01	ci right 2.338392e-01	k: 207334	n:890000
KS ci ratio: 1.593164e-01	ci left: 6.256175e-04	ci right 7.349779e-04	k: 604	n:890000
PRIM2   890000 perm   527 sec   (1689 perm/sec)   p_kst 6.786517e-04   p_cons 2.329596e-01   p_joint 1.810112e-03

Joint ci ratio: 9.712542e-02	ci left: 1.718899e-03	ci right 1.895443e-03	k: 1625	n:900000
Cons ci ratio: 7.498742e-03	ci left: 2.320404e-01	ci right 2.337880e-01	k: 209622	n:900000
KS ci ratio: 1.585323e-01	ci left: 6.250678e-04	ci right 7.337431e-04	k: 610	n:900000
PRIM2   900000 perm   536 sec   (1679 perm/sec)   p_kst 6.777778e-04   p_cons 2.329133e-01   p_joint 1.805556e-03

Joint ci ratio: 9.676931e-02	ci left: 1.712877e-03	ci right 1.888121e-03	k: 1637	n:910000
Cons ci ratio: 7.456971e-03	ci left: 2.320670e-01	ci right 2.338050e-01	k: 211971	n:910000
KS ci ratio: 1.577597e-01	ci left: 6.245313e-04	ci right 7.325341e-04	k: 616	n:910000
PRIM2   910000 perm   546 sec   (1668 perm/sec)   p_kst 6.769231e-04   p_cons 2.329352e-01   p_joint 1.798901e-03

Joint ci ratio: 9.730734e-02	ci left: 1.675166e-03	ci right 1.847560e-03	k: 1619	n:920000
Cons ci ratio: 7.412892e-03	ci left: 2.322374e-01	ci right 2.339664e-01	k: 214453	n:920000
KS ci ratio: 1.568723e-01	ci left: 6.250521e-04	ci right 7.324798e-04	k: 623	n:920000
PRIM2   920000 perm   555 sec   (1658 perm/sec)   p_kst 6.771739e-04   p_cons 2.331011e-01   p_joint 1.759783e-03

Joint ci ratio: 9.683043e-02	ci left: 1.673941e-03	ci right 1.845316e-03	k: 1635	n:930000
Cons ci ratio: 7.371578e-03	ci left: 2.323076e-01	ci right 2.340274e-01	k: 216845	n:930000
KS ci ratio: 1.559997e-01	ci left: 6.255634e-04	ci right 7.324249e-04	k: 630	n:930000
PRIM2   930000 perm   565 sec   (1647 perm/sec)   p_kst 6.774194e-04   p_cons 2.331667e-01   p_joint 1.758065e-03

Joint ci ratio: 9.650687e-02	ci left: 1.667552e-03	ci right 1.837670e-03	k: 1646	n:940000
Cons ci ratio: 7.331797e-03	ci left: 2.323348e-01	ci right 2.340456e-01	k: 219198	n:940000
KS ci ratio: 1.553854e-01	ci left: 6.240204e-04	ci right 7.301595e-04	k: 635	n:940000
PRIM2   940000 perm   574 sec   (1637 perm/sec)   p_kst 6.755319e-04   p_cons 2.331894e-01   p_joint 1.751064e-03

Joint ci ratio: 9.607051e-02	ci left: 1.665408e-03	ci right 1.834496e-03	k: 1661	n:950000
Cons ci ratio: 7.293105e-03	ci left: 2.323394e-01	ci right 2.340411e-01	k: 221530	n:950000
KS ci ratio: 1.550206e-01	ci left: 6.204869e-04	ci right 7.257541e-04	k: 638	n:950000
PRIM2   950000 perm   584 sec   (1627 perm/sec)   p_kst 6.715789e-04   p_cons 2.331895e-01   p_joint 1.748421e-03

Joint ci ratio: 9.692215e-02	ci left: 1.618578e-03	ci right 1.784451e-03	k: 1632	n:960000
Cons ci ratio: 7.254110e-03	ci left: 2.323887e-01	ci right 2.340816e-01	k: 223905	n:960000
KS ci ratio: 1.545378e-01	ci left: 6.180287e-04	ci right 7.225222e-04	k: 642	n:960000
PRIM2   960000 perm   594 sec   (1617 perm/sec)   p_kst 6.687500e-04   p_cons 2.332344e-01   p_joint 1.700000e-03

Joint ci ratio: 9.648016e-02	ci left: 1.616982e-03	ci right 1.781893e-03	k: 1647	n:970000
Cons ci ratio: 7.217814e-03	ci left: 2.323340e-01	ci right 2.340181e-01	k: 226180	n:970000
KS ci ratio: 1.538219e-01	ci left: 6.176042e-04	ci right 7.214975e-04	k: 648	n:970000
PRIM2   970000 perm   603 sec   (1607 perm/sec)   p_kst 6.680412e-04   p_cons 2.331753e-01   p_joint 1.697938e-03

Joint ci ratio: 9.592866e-02	ci left: 1.619403e-03	ci right 1.783564e-03	k: 1666	n:980000
Cons ci ratio: 7.180992e-03	ci left: 2.323335e-01	ci right 2.340089e-01	k: 228507	n:980000
KS ci ratio: 1.521886e-01	ci left: 6.250411e-04	ci right 7.289673e-04	k: 662	n:980000
PRIM2   980000 perm   613 sec   (1598 perm/sec)   p_kst 6.755102e-04   p_cons 2.331704e-01   p_joint 1.700000e-03

Joint ci ratio: 9.578570e-02	ci left: 1.607975e-03	ci right 1.770721e-03	k: 1671	n:990000
Cons ci ratio: 7.143940e-03	ci left: 2.323723e-01	ci right 2.340393e-01	k: 230873	n:990000
KS ci ratio: 1.521891e-01	ci left: 6.187274e-04	ci right 7.216042e-04	k: 662	n:990000
PRIM2   990000 perm   623 sec   (1588 perm/sec)   p_kst 6.686869e-04   p_cons 2.332051e-01   p_joint 1.687879e-03

Joint ci ratio: 9.513331e-02	ci left: 1.614346e-03	ci right 1.776562e-03	k: 1694	n:1000000
Cons ci ratio: 7.107436e-03	ci left: 2.324114e-01	ci right 2.340701e-01	k: 233240	n:1000000
KS ci ratio: 1.509418e-01	ci left: 6.231231e-04	ci right 7.258049e-04	k: 673	n:1000000
PRIM2   1000000 perm   633 sec   (1579 perm/sec)   p_kst 6.730000e-04   p_cons 2.332400e-01   p_joint 1.694000e-03

Joint ci ratio: 9.468751e-02	ci left: 1.613828e-03	ci right 1.775190e-03	k: 1710	n:1010000
Cons ci ratio: 7.072250e-03	ci left: 2.324112e-01	ci right 2.340616e-01	k: 235568	n:1010000
KS ci ratio: 1.503851e-01	ci left: 6.217173e-04	ci right 7.237557e-04	k: 678	n:1010000
PRIM2   1010000 perm   644 sec   (1569 perm/sec)   p_kst 6.712871e-04   p_cons 2.332356e-01   p_joint 1.693069e-03

Joint ci ratio: 9.502266e-02	ci left: 1.586520e-03	ci right 1.745743e-03	k: 1698	n:1020000
Cons ci ratio: 7.037832e-03	ci left: 2.323982e-01	ci right 2.340405e-01	k: 237883	n:1020000
KS ci ratio: 1.498346e-01	ci left: 6.203399e-04	ci right 7.217461e-04	k: 683	n:1020000
PRIM2   1020000 perm   654 sec   (1560 perm/sec)   p_kst 6.696078e-04   p_cons 2.332186e-01   p_joint 1.664706e-03

Joint ci ratio: 9.455079e-02	ci left: 1.587230e-03	ci right 1.745690e-03	k: 1715	n:1030000
Cons ci ratio: 7.003930e-03	ci left: 2.323846e-01	ci right 2.340189e-01	k: 240197	n:1030000
KS ci ratio: 1.490737e-01	ci left: 6.208592e-04	ci right 7.217889e-04	k: 690	n:1030000
PRIM2   1030000 perm   664 sec   (1551 perm/sec)   p_kst 6.699029e-04   p_cons 2.332010e-01   p_joint 1.665049e-03

Joint ci ratio: 1.035903e-01	ci left: 1.303758e-03	ci right 1.447119e-03	k: 1429	n:1040000
Cons ci ratio: 6.970757e-03	ci left: 2.323587e-01	ci right 2.339851e-01	k: 242498	n:1040000
KS ci ratio: 1.480064e-01	ci left: 6.241475e-04	ci right 7.248210e-04	k: 700	n:1040000
PRIM2   1040000 perm   674 sec   (1542 perm/sec)   p_kst 6.730769e-04   p_cons 2.331712e-01   p_joint 1.374038e-03

Joint ci ratio: 1.054917e-01	ci left: 1.244037e-03	ci right 1.383499e-03	k: 1378	n:1050000
Cons ci ratio: 6.937608e-03	ci left: 2.323562e-01	ci right 2.339748e-01	k: 244823	n:1050000
KS ci ratio: 1.470652e-01	ci left: 6.264583e-04	ci right 7.268055e-04	k: 709	n:1050000
PRIM2   1050000 perm   685 sec   (1533 perm/sec)   p_kst 6.752381e-04   p_cons 2.331648e-01   p_joint 1.312381e-03

Joint ci ratio: 1.067397e-01	ci left: 1.202912e-03	ci right 1.339459e-03	k: 1346	n:1060000
Cons ci ratio: 6.905692e-03	ci left: 2.323142e-01	ci right 2.339250e-01	k: 247106	n:1060000
KS ci ratio: 1.463455e-01	ci left: 6.269097e-04	ci right 7.267948e-04	k: 716	n:1060000
PRIM2   1060000 perm   695 sec   (1524 perm/sec)   p_kst 6.754717e-04   p_cons 2.331189e-01   p_joint 1.269811e-03

Joint ci ratio: 1.064244e-01	ci left: 1.198947e-03	ci right 1.334617e-03	k: 1354	n:1070000
Cons ci ratio: 6.873476e-03	ci left: 2.323113e-01	ci right 2.339145e-01	k: 249430	n:1070000
KS ci ratio: 1.459392e-01	ci left: 6.246523e-04	ci right 7.238773e-04	k: 720	n:1070000
PRIM2   1070000 perm   706 sec   (1515 perm/sec)   p_kst 6.728972e-04   p_cons 2.331121e-01   p_joint 1.265421e-03

Joint ci ratio: 1.059175e-01	ci left: 1.199563e-03	ci right 1.334616e-03	k: 1367	n:1080000
Cons ci ratio: 6.842292e-03	ci left: 2.322779e-01	ci right 2.338735e-01	k: 251721	n:1080000
KS ci ratio: 1.447393e-01	ci left: 6.295756e-04	ci right 7.286895e-04	k: 732	n:1080000
PRIM2   1080000 perm   717 sec   (1506 perm/sec)   p_kst 6.777778e-04   p_cons 2.330750e-01   p_joint 1.265741e-03

Joint ci ratio: 1.055326e-01	ci left: 1.197490e-03	ci right 1.331788e-03	k: 1377	n:1090000
Cons ci ratio: 6.810357e-03	ci left: 2.323065e-01	ci right 2.338949e-01	k: 254079	n:1090000
KS ci ratio: 1.442483e-01	ci left: 6.282210e-04	ci right 7.267572e-04	k: 737	n:1090000
PRIM2   1090000 perm   728 sec   (1498 perm/sec)   p_kst 6.761468e-04   p_cons 2.331000e-01   p_joint 1.263303e-03

Joint ci ratio: 1.050761e-01	ci left: 1.197225e-03	ci right 1.330878e-03	k: 1389	n:1100000
Cons ci ratio: 6.779537e-03	ci left: 2.322992e-01	ci right 2.338804e-01	k: 256398	n:1100000
KS ci ratio: 1.440535e-01	ci left: 6.242624e-04	ci right 7.220342e-04	k: 739	n:1100000
PRIM2   1100000 perm   739 sec   (1489 perm/sec)   p_kst 6.718182e-04   p_cons 2.330891e-01   p_joint 1.262727e-03

Joint ci ratio: 1.045508e-01	ci left: 1.198722e-03	ci right 1.331831e-03	k: 1403	n:1110000
Cons ci ratio: 6.749030e-03	ci left: 2.322975e-01	ci right 2.338715e-01	k: 258723	n:1110000
KS ci ratio: 1.434731e-01	ci left: 6.238494e-04	ci right 7.211291e-04	k: 745	n:1110000
PRIM2   1110000 perm   749 sec   (1481 perm/sec)   p_kst 6.711712e-04   p_cons 2.330838e-01   p_joint 1.263964e-03

Joint ci ratio: 1.039600e-01	ci left: 1.201932e-03	ci right 1.334597e-03	k: 1419	n:1120000
Cons ci ratio: 6.718159e-03	ci left: 2.323368e-01	ci right 2.339038e-01	k: 261094	n:1120000
KS ci ratio: 1.428046e-01	ci left: 6.243055e-04	ci right 7.211641e-04	k: 752	n:1120000
PRIM2   1120000 perm   760 sec   (1473 perm/sec)   p_kst 6.714286e-04   p_cons 2.331196e-01   p_joint 1.266964e-03

Joint ci ratio: 1.034873e-01	ci left: 1.202501e-03	ci right 1.334590e-03	k: 1432	n:1130000
Cons ci ratio: 6.688287e-03	ci left: 2.323445e-01	ci right 2.339046e-01	k: 263430	n:1130000
KS ci ratio: 1.425213e-01	ci left: 6.213407e-04	ci right 7.175317e-04	k: 755	n:1130000
PRIM2   1130000 perm   772 sec   (1465 perm/sec)   p_kst 6.681416e-04   p_cons 2.331239e-01   p_joint 1.267257e-03

Joint ci ratio: 1.031283e-01	ci left: 1.200498e-03	ci right 1.331881e-03	k: 1442	n:1140000
Cons ci ratio: 6.658843e-03	ci left: 2.323504e-01	ci right 2.339036e-01	k: 265764	n:1140000
KS ci ratio: 1.418660e-01	ci left: 6.218123e-04	ci right 7.175963e-04	k: 762	n:1140000
PRIM2   1140000 perm   783 sec   (1456 perm/sec)   p_kst 6.684211e-04   p_cons 2.331263e-01   p_joint 1.264912e-03

Joint ci ratio: 1.028438e-01	ci left: 1.196836e-03	ci right 1.327435e-03	k: 1450	n:1150000
Cons ci ratio: 6.630074e-03	ci left: 2.323405e-01	ci right 2.338869e-01	k: 268080	n:1150000
KS ci ratio: 1.414035e-01	ci left: 6.205989e-04	ci right 7.158581e-04	k: 767	n:1150000
PRIM2   1150000 perm   794 sec   (1449 perm/sec)   p_kst 6.669565e-04   p_cons 2.331130e-01   p_joint 1.260870e-03

Joint ci ratio: 1.024212e-01	ci left: 1.196598e-03	ci right 1.326602e-03	k: 1462	n:1160000
Cons ci ratio: 6.601469e-03	ci left: 2.323420e-01	ci right 2.338817e-01	k: 270409	n:1160000
KS ci ratio: 1.405820e-01	ci left: 6.227339e-04	ci right 7.177190e-04	k: 776	n:1160000
PRIM2   1160000 perm   805 sec   (1441 perm/sec)   p_kst 6.689655e-04   p_cons 2.331112e-01   p_joint 1.260345e-03

Joint ci ratio: 1.024217e-01	ci left: 1.186371e-03	ci right 1.315264e-03	k: 1462	n:1170000
Cons ci ratio: 6.573324e-03	ci left: 2.323384e-01	ci right 2.338715e-01	k: 272732	n:1170000
KS ci ratio: 1.399530e-01	ci left: 6.231844e-04	ci right 7.177774e-04	k: 783	n:1170000
PRIM2   1170000 perm   816 sec   (1433 perm/sec)   p_kst 6.692308e-04   p_cons 2.331043e-01   p_joint 1.249573e-03

Joint ci ratio: 1.033818e-01	ci left: 1.154023e-03	ci right 1.280649e-03	k: 1435	n:1180000
Cons ci ratio: 6.543598e-03	ci left: 2.324406e-01	ci right 2.339675e-01	k: 275180	n:1180000
KS ci ratio: 1.394206e-01	ci left: 6.228102e-04	ci right 7.169569e-04	k: 789	n:1180000
PRIM2   1180000 perm   828 sec   (1426 perm/sec)   p_kst 6.686441e-04   p_cons 2.332034e-01   p_joint 1.216102e-03

Joint ci ratio: 1.030595e-01	ci left: 1.151693e-03	ci right 1.277646e-03	k: 1444	n:1190000
Cons ci ratio: 6.514853e-03	ci left: 2.325093e-01	ci right 2.340298e-01	k: 277590	n:1190000
KS ci ratio: 1.389816e-01	ci left: 6.216318e-04	ci right 7.152800e-04	k: 794	n:1190000
PRIM2   1190000 perm   839 sec   (1418 perm/sec)   p_kst 6.672269e-04   p_cons 2.332689e-01   p_joint 1.213445e-03

Joint ci ratio: 1.024584e-01	ci left: 1.155898e-03	ci right 1.281529e-03	k: 1461	n:1200000
Cons ci ratio: 6.487782e-03	ci left: 2.325052e-01	ci right 2.340194e-01	k: 279914	n:1200000
KS ci ratio: 1.383737e-01	ci left: 6.220825e-04	ci right 7.153549e-04	k: 801	n:1200000
PRIM2   1200000 perm   851 sec   (1410 perm/sec)   p_kst 6.675000e-04   p_cons 2.332617e-01   p_joint 1.217500e-03

Joint ci ratio: 1.020405e-01	ci left: 1.156009e-03	ci right 1.281109e-03	k: 1473	n:1210000
Cons ci ratio: 6.460613e-03	ci left: 2.325252e-01	ci right 2.340331e-01	k: 282267	n:1210000
KS ci ratio: 1.379445e-01	ci left: 6.209307e-04	ci right 7.137179e-04	k: 806	n:1210000
PRIM2   1210000 perm   863 sec   (1403 perm/sec)   p_kst 6.661157e-04   p_cons 2.332785e-01   p_joint 1.217355e-03

Joint ci ratio: 1.015592e-01	ci left: 1.157717e-03	ci right 1.282375e-03	k: 1487	n:1220000
Cons ci ratio: 6.433400e-03	ci left: 2.325661e-01	ci right 2.340679e-01	k: 284646	n:1220000
KS ci ratio: 1.374345e-01	ci left: 6.205897e-04	ci right 7.129551e-04	k: 812	n:1220000
PRIM2   1220000 perm   874 sec   (1395 perm/sec)   p_kst 6.655738e-04   p_cons 2.333164e-01   p_joint 1.218852e-03

Joint ci ratio: 1.042973e-01	ci left: 1.087312e-03	ci right 1.207739e-03	k: 1410	n:1230000
Cons ci ratio: 6.408027e-03	ci left: 2.325228e-01	ci right 2.340183e-01	k: 286922	n:1230000
KS ci ratio: 1.368466e-01	ci left: 6.210401e-04	ci right 7.130449e-04	k: 819	n:1230000
PRIM2   1230000 perm   886 sec   (1388 perm/sec)   p_kst 6.658537e-04   p_cons 2.332699e-01   p_joint 1.146341e-03

Joint ci ratio: 1.037836e-01	ci left: 1.089540e-03	ci right 1.209584e-03	k: 1424	n:1240000
Cons ci ratio: 6.383254e-03	ci left: 2.324632e-01	ci right 2.339526e-01	k: 289177	n:1240000
KS ci ratio: 1.362662e-01	ci left: 6.214840e-04	ci right 7.131324e-04	k: 826	n:1240000
PRIM2   1240000 perm   898 sec   (1381 perm/sec)   p_kst 6.661290e-04   p_cons 2.332073e-01   p_joint 1.148387e-03

Joint ci ratio: 1.034575e-01	ci left: 1.087837e-03	ci right 1.207293e-03	k: 1433	n:1250000
Cons ci ratio: 6.357145e-03	ci left: 2.324957e-01	ci right 2.339792e-01	k: 291546	n:1250000
KS ci ratio: 1.359380e-01	ci left: 6.196031e-04	ci right 7.107363e-04	k: 830	n:1250000
PRIM2   1250000 perm   910 sec   (1374 perm/sec)   p_kst 6.640000e-04   p_cons 2.332368e-01   p_joint 1.146400e-03

Joint ci ratio: 1.028140e-01	ci left: 1.093121e-03	ci right 1.212366e-03	k: 1451	n:1260000
Cons ci ratio: 6.332899e-03	ci left: 2.324405e-01	ci right 2.339179e-01	k: 293805	n:1260000
KS ci ratio: 1.350469e-01	ci left: 6.231200e-04	ci right 7.141213e-04	k: 841	n:1260000
PRIM2   1260000 perm   922 sec   (1367 perm/sec)   p_kst 6.674603e-04   p_cons 2.331786e-01   p_joint 1.151587e-03

Joint ci ratio: 1.027790e-01	ci left: 1.085281e-03	ci right 1.203627e-03	k: 1452	n:1270000
Cons ci ratio: 6.308136e-03	ci left: 2.324309e-01	ci right 2.339026e-01	k: 296121	n:1270000
KS ci ratio: 1.344890e-01	ci left: 6.235395e-04	ci right 7.141959e-04	k: 848	n:1270000
PRIM2   1270000 perm   934 sec   (1360 perm/sec)   p_kst 6.677165e-04   p_cons 2.331661e-01   p_joint 1.143307e-03

Joint ci ratio: 1.022873e-01	ci left: 1.087459e-03	ci right 1.205442e-03	k: 1466	n:1280000
Cons ci ratio: 6.283690e-03	ci left: 2.324200e-01	ci right 2.338859e-01	k: 298435	n:1280000
KS ci ratio: 1.333933e-01	ci left: 6.292392e-04	ci right 7.199198e-04	k: 862	n:1280000
PRIM2   1280000 perm   946 sec   (1353 perm/sec)   p_kst 6.734375e-04   p_cons 2.331523e-01   p_joint 1.145313e-03

Joint ci ratio: 1.018026e-01	ci left: 1.089605e-03	ci right 1.207227e-03	k: 1480	n:1290000
Cons ci ratio: 6.259552e-03	ci left: 2.324078e-01	ci right 2.338679e-01	k: 300747	n:1290000
KS ci ratio: 1.330086e-01	ci left: 6.281082e-04	ci right 7.183441e-04	k: 867	n:1290000
PRIM2   1290000 perm   959 sec   (1345 perm/sec)   p_kst 6.720930e-04   p_cons 2.331372e-01   p_joint 1.147287e-03

Joint ci ratio: 1.014267e-01	ci left: 1.089470e-03	ci right 1.206617e-03	k: 1491	n:1300000
Cons ci ratio: 6.235851e-03	ci left: 2.323865e-01	ci right 2.338409e-01	k: 303047	n:1300000
KS ci ratio: 1.327034e-01	ci left: 6.262512e-04	ci right 7.159976e-04	k: 871	n:1300000
PRIM2   1300000 perm   971 sec   (1339 perm/sec)   p_kst 6.700000e-04   p_cons 2.331131e-01   p_joint 1.146923e-03

Joint ci ratio: 1.008535e-01	ci left: 1.093802e-03	ci right 1.210711e-03	k: 1508	n:1310000
Cons ci ratio: 6.212524e-03	ci left: 2.323594e-01	ci right 2.338082e-01	k: 305339	n:1310000
KS ci ratio: 1.322492e-01	ci left: 6.258990e-04	ci right 7.152638e-04	k: 877	n:1310000
PRIM2   1310000 perm   984 sec   (1332 perm/sec)   p_kst 6.694656e-04   p_cons 2.330832e-01   p_joint 1.151145e-03

Joint ci ratio: 1.005542e-01	ci left: 1.092162e-03	ci right 1.208529e-03	k: 1517	n:1320000
Cons ci ratio: 6.188695e-03	ci left: 2.323767e-01	ci right 2.338200e-01	k: 307689	n:1320000
KS ci ratio: 1.317251e-01	ci left: 6.262853e-04	ci right 7.153232e-04	k: 884	n:1320000
PRIM2   1320000 perm   996 sec   (1325 perm/sec)   p_kst 6.696970e-04   p_cons 2.330977e-01   p_joint 1.149242e-03

Joint ci ratio: 1.013260e-01	ci left: 1.067093e-03	ci right 1.181714e-03	k: 1494	n:1330000
Cons ci ratio: 6.165852e-03	ci left: 2.323524e-01	ci right 2.337902e-01	k: 309984	n:1330000
KS ci ratio: 1.310603e-01	ci left: 6.281209e-04	ci right 7.169340e-04	k: 893	n:1330000
PRIM2   1330000 perm   1008 sec   (1319 perm/sec)   p_kst 6.714286e-04   p_cons 2.330707e-01   p_joint 1.123308e-03

Joint ci ratio: 1.008883e-01	ci left: 1.068586e-03	ci right 1.182842e-03	k: 1507	n:1340000
Cons ci ratio: 6.144145e-03	ci left: 2.322770e-01	ci right 2.337092e-01	k: 312210	n:1340000
KS ci ratio: 1.306954e-01	ci left: 6.270426e-04	ci right 7.154372e-04	k: 898	n:1340000
PRIM2   1340000 perm   1021 sec   (1312 perm/sec)   p_kst 6.701493e-04   p_cons 2.329925e-01   p_joint 1.124627e-03

Joint ci ratio: 1.005555e-01	ci left: 1.067891e-03	ci right 1.181674e-03	k: 1517	n:1350000
Cons ci ratio: 6.122577e-03	ci left: 2.322079e-01	ci right 2.336347e-01	k: 314443	n:1350000
KS ci ratio: 1.301895e-01	ci left: 6.274138e-04	ci right 7.154920e-04	k: 905	n:1350000
PRIM2   1350000 perm   1034 sec   (1306 perm/sec)   p_kst 6.703704e-04   p_cons 2.329207e-01   p_joint 1.123704e-03

Joint ci ratio: 1.002259e-01	ci left: 1.067207e-03	ci right 1.180523e-03	k: 1527	n:1360000
Cons ci ratio: 6.099301e-03	ci left: 2.322530e-01	ci right 2.336746e-01	k: 316830	n:1360000
KS ci ratio: 1.299747e-01	ci left: 6.249345e-04	ci right 7.125087e-04	k: 908	n:1360000
PRIM2   1360000 perm   1047 sec   (1299 perm/sec)   p_kst 6.676471e-04   p_cons 2.329632e-01   p_joint 1.122794e-03

Joint ci ratio: 1.020131e-01	ci left: 1.021709e-03	ci right 1.132243e-03	k: 1474	n:1370000
Cons ci ratio: 6.076685e-03	ci left: 2.322741e-01	ci right 2.336905e-01	k: 319185	n:1370000
KS ci ratio: 1.294064e-01	ci left: 6.260230e-04	ci right 7.133366e-04	k: 916	n:1370000
PRIM2   1370000 perm   1060 sec   (1293 perm/sec)   p_kst 6.686131e-04   p_cons 2.329818e-01   p_joint 1.075912e-03

Joint ci ratio: 9.293138e-02	ci left: 1.227828e-03	ci right 1.348194e-03	k: 1776	n:1380000
Cons ci ratio: 6.054565e-03	ci left: 2.322804e-01	ci right 2.336917e-01	k: 321520	n:1380000
KS ci ratio: 1.288456e-01	ci left: 6.270964e-04	ci right 7.141518e-04	k: 924	n:1380000
PRIM2   1380000 perm   1073 sec   (1287 perm/sec)   p_kst 6.695652e-04   p_cons 2.329855e-01   p_joint 1.286957e-03

Joint ci ratio: 9.248989e-02	ci left: 1.230942e-03	ci right 1.351008e-03	k: 1793	n:1390000
Cons ci ratio: 6.031980e-03	ci left: 2.323283e-01	ci right 2.337347e-01	k: 323913	n:1390000
KS ci ratio: 1.280176e-01	ci left: 6.309407e-04	ci right 7.179242e-04	k: 936	n:1390000
PRIM2   1390000 perm   1086 sec   (1280 perm/sec)   p_kst 6.733813e-04   p_cons 2.330309e-01   p_joint 1.289928e-03

Joint ci ratio: 9.218213e-02	ci left: 1.230523e-03	ci right 1.350127e-03	k: 1805	n:1400000
Cons ci ratio: 6.010594e-03	ci left: 2.323192e-01	ci right 2.337205e-01	k: 326227	n:1400000
KS ci ratio: 1.275421e-01	ci left: 6.312742e-04	ci right 7.179559e-04	k: 943	n:1400000
PRIM2   1400000 perm   1099 sec   (1274 perm/sec)   p_kst 6.735714e-04   p_cons 2.330193e-01   p_joint 1.289286e-03

Joint ci ratio: 9.180161e-02	ci left: 1.232189e-03	ci right 1.351435e-03	k: 1820	n:1410000
Cons ci ratio: 5.989482e-03	ci left: 2.323074e-01	ci right 2.337036e-01	k: 328537	n:1410000
KS ci ratio: 1.268717e-01	ci left: 6.336637e-04	ci right 7.201817e-04	k: 953	n:1410000
PRIM2   1410000 perm   1112 sec   (1268 perm/sec)   p_kst 6.758865e-04   p_cons 2.330050e-01   p_joint 1.290780e-03

Joint ci ratio: 9.145071e-02	ci left: 1.233145e-03	ci right 1.352003e-03	k: 1834	n:1420000
Cons ci ratio: 5.967944e-03	ci left: 2.323344e-01	ci right 2.337258e-01	k: 330902	n:1420000
KS ci ratio: 1.263430e-01	ci left: 6.346566e-04	ci right 7.209221e-04	k: 961	n:1420000
PRIM2   1420000 perm   1125 sec   (1262 perm/sec)   p_kst 6.767606e-04   p_cons 2.330296e-01   p_joint 1.291549e-03

Joint ci ratio: 9.155109e-02	ci left: 1.221788e-03	ci right 1.339687e-03	k: 1830	n:1430000
Cons ci ratio: 5.947405e-03	ci left: 2.323150e-01	ci right 2.337015e-01	k: 333201	n:1430000
KS ci ratio: 1.258858e-01	ci left: 6.349591e-04	ci right 7.209302e-04	k: 968	n:1430000
PRIM2   1430000 perm   1139 sec   (1256 perm/sec)   p_kst 6.769231e-04   p_cons 2.330077e-01   p_joint 1.279720e-03

Joint ci ratio: 9.147649e-02	ci left: 1.215339e-03	ci right 1.332515e-03	k: 1833	n:1440000
Cons ci ratio: 5.927053e-03	ci left: 2.322972e-01	ci right 2.336788e-01	k: 335502	n:1440000
KS ci ratio: 1.257563e-01	ci left: 6.318948e-04	ci right 7.173564e-04	k: 970	n:1440000
PRIM2   1440000 perm   1152 sec   (1250 perm/sec)   p_kst 6.736111e-04   p_cons 2.329875e-01   p_joint 1.272917e-03

Joint ci ratio: 9.125298e-02	ci left: 1.213022e-03	ci right 1.329674e-03	k: 1842	n:1450000
Cons ci ratio: 5.906168e-03	ci left: 2.323245e-01	ci right 2.337014e-01	k: 337868	n:1450000
KS ci ratio: 1.254339e-01	ci left: 6.308768e-04	ci right 7.159657e-04	k: 975	n:1450000
PRIM2   1450000 perm   1166 sec   (1244 perm/sec)   p_kst 6.724138e-04   p_cons 2.330124e-01   p_joint 1.270345e-03

Joint ci ratio: 9.085934e-02	ci left: 1.215423e-03	ci right 1.331775e-03	k: 1858	n:1460000
Cons ci ratio: 5.885468e-03	ci left: 2.323535e-01	ci right 2.337257e-01	k: 340237	n:1460000
KS ci ratio: 1.246696e-01	ci left: 6.345179e-04	ci right 7.195378e-04	k: 987	n:1460000
PRIM2   1460000 perm   1179 sec   (1238 perm/sec)   p_kst 6.760274e-04   p_cons 2.330390e-01   p_joint 1.272603e-03

Joint ci ratio: 9.054329e-02	ci left: 1.215798e-03	ci right 1.331759e-03	k: 1871	n:1470000
Cons ci ratio: 5.864773e-03	ci left: 2.323950e-01	ci right 2.337626e-01	k: 342625	n:1470000
KS ci ratio: 1.242302e-01	ci left: 6.348151e-04	ci right 7.195531e-04	k: 994	n:1470000
PRIM2   1470000 perm   1193 sec   (1233 perm/sec)   p_kst 6.761905e-04   p_cons 2.330782e-01   p_joint 1.272789e-03

Joint ci ratio: 9.288312e-02	ci left: 1.146184e-03	ci right 1.258485e-03	k: 1778	n:1480000
Cons ci ratio: 5.844703e-03	ci left: 2.324109e-01	ci right 2.337739e-01	k: 344976	n:1480000
KS ci ratio: 1.237338e-01	ci left: 6.357636e-04	ci right 7.202642e-04	k: 1002	n:1480000
PRIM2   1480000 perm   1206 sec   (1227 perm/sec)   p_kst 6.770270e-04   p_cons 2.330919e-01   p_joint 1.201351e-03

Joint ci ratio: 9.530071e-02	ci left: 1.080164e-03	ci right 1.188904e-03	k: 1689	n:1490000
Cons ci ratio: 5.825165e-03	ci left: 2.324065e-01	ci right 2.337650e-01	k: 347297	n:1490000
KS ci ratio: 1.231214e-01	ci left: 6.380010e-04	ci right 7.223487e-04	k: 1012	n:1490000
PRIM2   1490000 perm   1219 sec   (1222 perm/sec)   p_kst 6.791946e-04   p_cons 2.330852e-01   p_joint 1.133557e-03

Joint ci ratio: 9.502004e-02	ci left: 1.079471e-03	ci right 1.187803e-03	k: 1699	n:1500000
Cons ci ratio: 5.805995e-03	ci left: 2.323916e-01	ci right 2.337454e-01	k: 349602	n:1500000
KS ci ratio: 1.227584e-01	ci left: 6.376246e-04	ci right 7.216560e-04	k: 1018	n:1500000
PRIM2   1500000 perm   1232 sec   (1217 perm/sec)   p_kst 6.786667e-04   p_cons 2.330680e-01   p_joint 1.132667e-03

Joint ci ratio: 9.474184e-02	ci left: 1.078787e-03	ci right 1.186717e-03	k: 1709	n:1510000
Cons ci ratio: 5.787089e-03	ci left: 2.323722e-01	ci right 2.337215e-01	k: 351900	n:1510000
KS ci ratio: 1.223389e-01	ci left: 6.378956e-04	ci right 7.216546e-04	k: 1025	n:1510000
PRIM2   1510000 perm   1246 sec   (1212 perm/sec)   p_kst 6.788079e-04   p_cons 2.330464e-01   p_joint 1.131788e-03

Joint ci ratio: 9.441113e-02	ci left: 1.079398e-03	ci right 1.186991e-03	k: 1721	n:1520000
Cons ci ratio: 5.768089e-03	ci left: 2.323702e-01	ci right 2.337150e-01	k: 354224	n:1520000
KS ci ratio: 1.218647e-01	ci left: 6.388014e-04	ci right 7.223307e-04	k: 1033	n:1520000
PRIM2   1520000 perm   1259 sec   (1207 perm/sec)   p_kst 6.796053e-04   p_cons 2.330421e-01   p_joint 1.132237e-03

Joint ci ratio: 9.405671e-02	ci left: 1.080640e-03	ci right 1.187930e-03	k: 1734	n:1530000
Cons ci ratio: 5.748814e-03	ci left: 2.323969e-01	ci right 2.337374e-01	k: 356592	n:1530000
KS ci ratio: 1.214543e-01	ci left: 6.390621e-04	ci right 7.223239e-04	k: 1040	n:1530000
PRIM2   1530000 perm   1273 sec   (1202 perm/sec)   p_kst 6.797386e-04   p_cons 2.330667e-01   p_joint 1.133333e-03

Joint ci ratio: 9.375997e-02	ci left: 1.080598e-03	ci right 1.187526e-03	k: 1745	n:1540000
Cons ci ratio: 5.730552e-03	ci left: 2.323721e-01	ci right 2.337081e-01	k: 358881	n:1540000
KS ci ratio: 1.210480e-01	ci left: 6.393200e-04	ci right 7.223167e-04	k: 1047	n:1540000
PRIM2   1540000 perm   1287 sec   (1197 perm/sec)   p_kst 6.798701e-04   p_cons 2.330396e-01   p_joint 1.133117e-03

Joint ci ratio: 9.357272e-02	ci left: 1.078036e-03	ci right 1.184487e-03	k: 1752	n:1550000
Cons ci ratio: 5.711639e-03	ci left: 2.323991e-01	ci right 2.337309e-01	k: 361250	n:1550000
KS ci ratio: 1.208752e-01	ci left: 6.370722e-04	ci right 7.196507e-04	k: 1050	n:1550000
PRIM2   1550000 perm   1301 sec   (1192 perm/sec)   p_kst 6.774194e-04   p_cons 2.330645e-01   p_joint 1.130323e-03

Joint ci ratio: 9.333350e-02	ci left: 1.076760e-03	ci right 1.182798e-03	k: 1761	n:1560000
Cons ci ratio: 5.693289e-03	ci left: 2.324021e-01	ci right 2.337296e-01	k: 363582	n:1560000
KS ci ratio: 1.205317e-01	ci left: 6.367184e-04	ci right 7.189998e-04	k: 1056	n:1560000
PRIM2   1560000 perm   1315 sec   (1186 perm/sec)   p_kst 6.769231e-04   p_cons 2.330654e-01   p_joint 1.128846e-03

Joint ci ratio: 9.584434e-02	ci left: 1.013309e-03	ci right 1.115934e-03	k: 1670	n:1570000
Cons ci ratio: 5.674609e-03	ci left: 2.324369e-01	ci right 2.337603e-01	k: 365964	n:1570000
KS ci ratio: 1.201345e-01	ci left: 6.369873e-04	ci right 7.190129e-04	k: 1063	n:1570000
PRIM2   1570000 perm   1329 sec   (1182 perm/sec)   p_kst 6.770701e-04   p_cons 2.330981e-01   p_joint 1.063694e-03

Joint ci ratio: 9.553041e-02	ci left: 1.013691e-03	ci right 1.116000e-03	k: 1681	n:1580000
Cons ci ratio: 5.657124e-03	ci left: 2.324074e-01	ci right 2.337265e-01	k: 368245	n:1580000
KS ci ratio: 1.197413e-01	ci left: 6.372532e-04	ci right 7.190254e-04	k: 1070	n:1580000
PRIM2   1580000 perm   1343 sec   (1177 perm/sec)   p_kst 6.772152e-04   p_cons 2.330665e-01   p_joint 1.063924e-03

Joint ci ratio: 9.536062e-02	ci left: 1.011000e-03	ci right 1.112844e-03	k: 1687	n:1590000
Cons ci ratio: 5.639571e-03	ci left: 2.323927e-01	ci right 2.337076e-01	k: 370549	n:1590000
KS ci ratio: 1.194073e-01	ci left: 6.369060e-04	ci right 7.183896e-04	k: 1076	n:1590000
PRIM2   1590000 perm   1357 sec   (1171 perm/sec)   p_kst 6.767296e-04   p_cons 2.330497e-01   p_joint 1.061006e-03

Joint ci ratio: 9.513552e-02	ci left: 1.009562e-03	ci right 1.111008e-03	k: 1695	n:1600000
Cons ci ratio: 5.621236e-03	ci left: 2.324382e-01	ci right 2.337490e-01	k: 372949	n:1600000
KS ci ratio: 1.190761e-01	ci left: 6.365635e-04	ci right 7.177615e-04	k: 1082	n:1600000
PRIM2   1600000 perm   1372 sec   (1166 perm/sec)   p_kst 6.762500e-04   p_cons 2.330931e-01   p_joint 1.059375e-03

Joint ci ratio: 9.496782e-02	ci left: 1.006929e-03	ci right 1.107923e-03	k: 1701	n:1610000
Cons ci ratio: 5.604267e-03	ci left: 2.324074e-01	ci right 2.337141e-01	k: 375227	n:1610000
KS ci ratio: 1.187477e-01	ci left: 6.362256e-04	ci right 7.171409e-04	k: 1088	n:1610000
PRIM2   1610000 perm   1386 sec   (1161 perm/sec)   p_kst 6.757764e-04   p_cons 2.330602e-01   p_joint 1.056522e-03

Joint ci ratio: 8.665055e-02	ci left: 1.207046e-03	ci right 1.316972e-03	k: 2043	n:1620000
Cons ci ratio: 5.505599e-03	ci left: 2.376885e-01	ci right 2.390013e-01	k: 386118	n:1620000
KS ci ratio: 1.181523e-01	ci left: 6.388872e-04	ci right 7.197052e-04	k: 1099	n:1620000
PRIM2   1620000 perm   1400 sec   (1157 perm/sec)   p_kst 6.783951e-04   p_cons 2.383444e-01   p_joint 1.261111e-03

Joint ci ratio: 8.697100e-02	ci left: 1.190637e-03	ci right 1.299491e-03	k: 2028	n:1630000
Cons ci ratio: 5.489292e-03	ci left: 2.376504e-01	ci right 2.389591e-01	k: 388436	n:1630000
KS ci ratio: 1.180452e-01	ci left: 6.361584e-04	ci right 7.165531e-04	k: 1101	n:1630000
PRIM2   1630000 perm   1415 sec   (1152 perm/sec)   p_kst 6.754601e-04   p_cons 2.383043e-01   p_joint 1.244172e-03

Joint ci ratio: 8.692844e-02	ci left: 1.184570e-03	ci right 1.292813e-03	k: 2030	n:1640000
Cons ci ratio: 5.473441e-03	ci left: 2.375921e-01	ci right 2.388967e-01	k: 390720	n:1640000
KS ci ratio: 1.178316e-01	ci left: 6.346464e-04	ci right 7.146949e-04	k: 1105	n:1640000
PRIM2   1640000 perm   1429 sec   (1148 perm/sec)   p_kst 6.737805e-04   p_cons 2.382439e-01   p_joint 1.237805e-03

Joint ci ratio: 8.716542e-02	ci left: 1.170869e-03	ci right 1.278167e-03	k: 2019	n:1650000
Cons ci ratio: 5.456615e-03	ci left: 2.376083e-01	ci right 2.389090e-01	k: 393126	n:1650000
KS ci ratio: 1.177254e-01	ci left: 6.319764e-04	ci right 7.116113e-04	k: 1107	n:1650000
PRIM2   1650000 perm   1444 sec   (1143 perm/sec)   p_kst 6.709091e-04   p_cons 2.382582e-01   p_joint 1.223636e-03

Joint ci ratio: 8.697198e-02	ci left: 1.169119e-03	ci right 1.276007e-03	k: 2028	n:1660000
Cons ci ratio: 5.440088e-03	ci left: 2.376147e-01	ci right 2.389115e-01	k: 395516	n:1660000
KS ci ratio: 1.175665e-01	ci left: 6.299233e-04	ci right 7.091849e-04	k: 1110	n:1660000
PRIM2   1660000 perm   1458 sec   (1139 perm/sec)   p_kst 6.686747e-04   p_cons 2.382627e-01   p_joint 1.221687e-03

Joint ci ratio: 8.677981e-02	ci left: 1.167390e-03	ci right 1.273872e-03	k: 2037	n:1670000
Cons ci ratio: 5.423486e-03	ci left: 2.376360e-01	ci right 2.389289e-01	k: 397931	n:1670000
KS ci ratio: 1.173555e-01	ci left: 6.284762e-04	ci right 7.074039e-04	k: 1114	n:1670000
PRIM2   1670000 perm   1473 sec   (1134 perm/sec)   p_kst 6.670659e-04   p_cons 2.382820e-01   p_joint 1.219760e-03

Joint ci ratio: 8.658891e-02	ci left: 1.165683e-03	ci right 1.271763e-03	k: 2046	n:1680000
Cons ci ratio: 5.407496e-03	ci left: 2.376262e-01	ci right 2.389152e-01	k: 400294	n:1680000
KS ci ratio: 1.171457e-01	ci left: 6.270463e-04	ci right 7.056439e-04	k: 1118	n:1680000
PRIM2   1680000 perm   1487 sec   (1130 perm/sec)   p_kst 6.654762e-04   p_cons 2.382702e-01   p_joint 1.217857e-03

Joint ci ratio: 8.629427e-02	ci left: 1.166890e-03	ci right 1.272701e-03	k: 2060	n:1690000
Cons ci ratio: 5.391401e-03	ci left: 2.376330e-01	ci right 2.389182e-01	k: 402685	n:1690000
KS ci ratio: 1.168329e-01	ci left: 6.267824e-04	ci right 7.051227e-04	k: 1124	n:1690000
PRIM2   1690000 perm   1502 sec   (1125 perm/sec)   p_kst 6.650888e-04   p_cons 2.382751e-01   p_joint 1.218935e-03

Joint ci ratio: 8.682341e-02	ci left: 1.145638e-03	ci right 1.250191e-03	k: 2035	n:1700000
Cons ci ratio: 5.375954e-03	ci left: 2.376056e-01	ci right 2.388870e-01	k: 405018	n:1700000
KS ci ratio: 1.167812e-01	ci left: 6.236664e-04	ci right 7.015804e-04	k: 1125	n:1700000
PRIM2   1700000 perm   1518 sec   (1120 perm/sec)   p_kst 6.617647e-04   p_cons 2.382459e-01   p_joint 1.197059e-03

Joint ci ratio: 8.658984e-02	ci left: 1.145232e-03	ci right 1.249452e-03	k: 2046	n:1710000
Cons ci ratio: 5.359991e-03	ci left: 2.376224e-01	ci right 2.389001e-01	k: 407426	n:1710000
KS ci ratio: 1.163685e-01	ci left: 6.245612e-04	ci right 7.022923e-04	k: 1133	n:1710000
PRIM2   1710000 perm   1533 sec   (1115 perm/sec)   p_kst 6.625731e-04   p_cons 2.382608e-01   p_joint 1.196491e-03

Joint ci ratio: 8.612799e-02	ci left: 1.151088e-03	ci right 1.255254e-03	k: 2068	n:1720000
Cons ci ratio: 5.344495e-03	ci left: 2.376170e-01	ci right 2.388909e-01	k: 409796	n:1720000
KS ci ratio: 1.156061e-01	ci left: 6.293981e-04	ci right 7.071829e-04	k: 1148	n:1720000
PRIM2   1720000 perm   1548 sec   (1111 perm/sec)   p_kst 6.674419e-04   p_cons 2.382535e-01   p_joint 1.202326e-03

Joint ci ratio: 8.637945e-02	ci left: 1.137647e-03	ci right 1.240913e-03	k: 2056	n:1730000
Cons ci ratio: 5.329303e-03	ci left: 2.376000e-01	ci right 2.388702e-01	k: 412146	n:1730000
KS ci ratio: 1.150069e-01	ci left: 6.324963e-04	ci right 7.102314e-04	k: 1160	n:1730000
PRIM2   1730000 perm   1563 sec   (1107 perm/sec)   p_kst 6.705202e-04   p_cons 2.382347e-01   p_joint 1.188439e-03

Joint ci ratio: 8.614944e-02	ci left: 1.137294e-03	ci right 1.240240e-03	k: 2067	n:1740000
Cons ci ratio: 5.314045e-03	ci left: 2.375965e-01	ci right 2.388630e-01	k: 414519	n:1740000
KS ci ratio: 1.147601e-01	ci left: 6.316523e-04	ci right 7.091058e-04	k: 1165	n:1740000
PRIM2   1740000 perm   1578 sec   (1103 perm/sec)   p_kst 6.695402e-04   p_cons 2.382293e-01   p_joint 1.187931e-03

Joint ci ratio: 8.583861e-02	ci left: 1.139183e-03	ci right 1.241908e-03	k: 2082	n:1750000
Cons ci ratio: 5.298993e-03	ci left: 2.375879e-01	ci right 2.388507e-01	k: 416883	n:1750000
KS ci ratio: 1.143197e-01	ci left: 6.330384e-04	ci right 7.103438e-04	k: 1174	n:1750000
PRIM2   1750000 perm   1593 sec   (1099 perm/sec)   p_kst 6.708571e-04   p_cons 2.382189e-01   p_joint 1.189714e-03

Joint ci ratio: 8.551073e-02	ci left: 1.141606e-03	ci right 1.244137e-03	k: 2098	n:1760000
Cons ci ratio: 5.283837e-03	ci left: 2.375952e-01	ci right 2.388545e-01	k: 419275	n:1760000
KS ci ratio: 1.138843e-01	ci left: 6.344093e-04	ci right 7.115673e-04	k: 1183	n:1760000
PRIM2   1760000 perm   1608 sec   (1094 perm/sec)   p_kst 6.721591e-04   p_cons 2.382244e-01   p_joint 1.192045e-03

Joint ci ratio: 8.623384e-02	ci left: 1.115806e-03	ci right 1.216911e-03	k: 2063	n:1770000
Cons ci ratio: 5.269638e-03	ci left: 2.375455e-01	ci right 2.388011e-01	k: 421566	n:1770000
KS ci ratio: 1.135492e-01	ci left: 6.346674e-04	ci right 7.116144e-04	k: 1190	n:1770000
PRIM2   1770000 perm   1624 sec   (1090 perm/sec)   p_kst 6.723164e-04   p_cons 2.381729e-01   p_joint 1.165537e-03

Joint ci ratio: 8.604651e-02	ci left: 1.114485e-03	ci right 1.215239e-03	k: 2072	n:1780000
Cons ci ratio: 5.254845e-03	ci left: 2.375452e-01	ci right 2.387973e-01	k: 423944	n:1780000
KS ci ratio: 1.133116e-01	ci left: 6.338311e-04	ci right 7.105052e-04	k: 1195	n:1780000
PRIM2   1780000 perm   1639 sec   (1086 perm/sec)   p_kst 6.713483e-04   p_cons 2.381708e-01   p_joint 1.164045e-03

Joint ci ratio: 8.771469e-02	ci left: 1.065629e-03	ci right 1.163929e-03	k: 1994	n:1790000
Cons ci ratio: 5.240579e-03	ci left: 2.375169e-01	ci right 2.387655e-01	k: 426272	n:1790000
KS ci ratio: 1.130285e-01	ci left: 6.335472e-04	ci right 7.099827e-04	k: 1201	n:1790000
PRIM2   1790000 perm   1655 sec   (1082 perm/sec)   p_kst 6.709497e-04   p_cons 2.381408e-01   p_joint 1.113966e-03

Joint ci ratio: 8.747387e-02	ci left: 1.065686e-03	ci right 1.163708e-03	k: 2005	n:1800000
Cons ci ratio: 5.225821e-03	ci left: 2.375312e-01	ci right 2.387763e-01	k: 428676	n:1800000
KS ci ratio: 1.126542e-01	ci left: 6.343465e-04	ci right 7.106082e-04	k: 1209	n:1800000
PRIM2   1800000 perm   1671 sec   (1077 perm/sec)   p_kst 6.716667e-04   p_cons 2.381533e-01   p_joint 1.113889e-03

Joint ci ratio: 8.727835e-02	ci left: 1.064662e-03	ci right 1.162360e-03	k: 2014	n:1810000
Cons ci ratio: 5.211568e-03	ci left: 2.375188e-01	ci right 2.387605e-01	k: 431032	n:1810000
KS ci ratio: 1.124685e-01	ci left: 6.329896e-04	ci right 7.089543e-04	k: 1213	n:1810000
PRIM2   1810000 perm   1686 sec   (1073 perm/sec)   p_kst 6.701657e-04   p_cons 2.381392e-01   p_joint 1.112707e-03

Joint ci ratio: 8.699812e-02	ci left: 1.065799e-03	ci right 1.163272e-03	k: 2027	n:1820000
Cons ci ratio: 5.197021e-03	ci left: 2.375352e-01	ci right 2.387734e-01	k: 433440	n:1820000
KS ci ratio: 1.120997e-01	ci left: 6.337838e-04	ci right 7.095779e-04	k: 1221	n:1820000
PRIM2   1820000 perm   1702 sec   (1069 perm/sec)   p_kst 6.708791e-04   p_cons 2.381538e-01   p_joint 1.113736e-03

Joint ci ratio: 8.678445e-02	ci left: 1.065321e-03	ci right 1.162498e-03	k: 2037	n:1830000
Cons ci ratio: 5.182588e-03	ci left: 2.375518e-01	ci right 2.387867e-01	k: 435849	n:1830000
KS ci ratio: 1.117800e-01	ci left: 6.340385e-04	ci right 7.096327e-04	k: 1228	n:1830000
PRIM2   1830000 perm   1718 sec   (1065 perm/sec)   p_kst 6.710383e-04   p_cons 2.381689e-01   p_joint 1.113115e-03

Joint ci ratio: 8.782627e-02	ci left: 1.034013e-03	ci right 1.129525e-03	k: 1989	n:1840000
Cons ci ratio: 5.168592e-03	ci left: 2.375461e-01	ci right 2.387776e-01	k: 438217	n:1840000
KS ci ratio: 1.113279e-01	ci left: 6.358758e-04	ci right 7.113623e-04	k: 1238	n:1840000
PRIM2   1840000 perm   1733 sec   (1061 perm/sec)   p_kst 6.728261e-04   p_cons 2.381614e-01   p_joint 1.080978e-03

Joint ci ratio: 8.756263e-02	ci left: 1.034768e-03	ci right 1.130048e-03	k: 2001	n:1850000
Cons ci ratio: 5.154770e-03	ci left: 2.375361e-01	ci right 2.387642e-01	k: 440577	n:1850000
KS ci ratio: 1.109257e-01	ci left: 6.371683e-04	ci right 7.125171e-04	k: 1247	n:1850000
PRIM2   1850000 perm   1749 sec   (1058 perm/sec)   p_kst 6.740541e-04   p_cons 2.381497e-01   p_joint 1.081622e-03

Joint ci ratio: 8.725799e-02	ci left: 1.036567e-03	ci right 1.131664e-03	k: 2015	n:1860000
Cons ci ratio: 5.140593e-03	ci left: 2.375589e-01	ci right 2.387838e-01	k: 442998	n:1860000
KS ci ratio: 1.103960e-01	ci left: 6.400158e-04	ci right 7.153164e-04	k: 1259	n:1860000
PRIM2   1860000 perm   1765 sec   (1054 perm/sec)   p_kst 6.768817e-04   p_cons 2.381710e-01   p_joint 1.083333e-03

Joint ci ratio: 8.699942e-02	ci left: 1.037301e-03	ci right 1.132169e-03	k: 2027	n:1870000
Cons ci ratio: 5.127062e-03	ci left: 2.375442e-01	ci right 2.387657e-01	k: 445349	n:1870000
KS ci ratio: 1.101777e-01	ci left: 6.391933e-04	ci right 7.142387e-04	k: 1264	n:1870000
PRIM2   1870000 perm   1782 sec   (1050 perm/sec)   p_kst 6.759358e-04   p_cons 2.381545e-01   p_joint 1.083957e-03

Joint ci ratio: 8.682839e-02	ci left: 1.035947e-03	ci right 1.130495e-03	k: 2035	n:1880000
Cons ci ratio: 5.112768e-03	ci left: 2.375912e-01	ci right 2.388096e-01	k: 447816	n:1880000
KS ci ratio: 1.099174e-01	ci left: 6.388969e-04	ci right 7.137189e-04	k: 1270	n:1880000
PRIM2   1880000 perm   1798 sec   (1046 perm/sec)   p_kst 6.755319e-04   p_cons 2.382000e-01   p_joint 1.082447e-03

Joint ci ratio: 8.665837e-02	ci left: 1.034606e-03	ci right 1.128838e-03	k: 2043	n:1890000
Cons ci ratio: 5.099544e-03	ci left: 2.375701e-01	ci right 2.387852e-01	k: 450155	n:1890000
KS ci ratio: 1.096159e-01	ci left: 6.391186e-04	ci right 7.137479e-04	k: 1277	n:1890000
PRIM2   1890000 perm   1814 sec   (1042 perm/sec)   p_kst 6.756614e-04   p_cons 2.381772e-01   p_joint 1.080952e-03

Joint ci ratio: 8.883902e-02	ci left: 9.781979e-04	ci right 1.069650e-03	k: 1944	n:1900000
Cons ci ratio: 5.085942e-03	ci left: 2.375834e-01	ci right 2.387953e-01	k: 452559	n:1900000
KS ci ratio: 1.094022e-01	ci left: 6.383143e-04	ci right 7.126950e-04	k: 1282	n:1900000
PRIM2   1900000 perm   1830 sec   (1038 perm/sec)   p_kst 6.747368e-04   p_cons 2.381889e-01   p_joint 1.023158e-03

Joint ci ratio: 8.865693e-02	ci left: 9.771719e-04	ci right 1.068331e-03	k: 1952	n:1910000
Cons ci ratio: 5.072727e-03	ci left: 2.375767e-01	ci right 2.387854e-01	k: 454925	n:1910000
KS ci ratio: 1.091049e-01	ci left: 6.385371e-04	ci right 7.127286e-04	k: 1289	n:1910000
PRIM2   1910000 perm   1846 sec   (1035 perm/sec)   p_kst 6.748691e-04   p_cons 2.381806e-01   p_joint 1.021990e-03

Joint ci ratio: 8.927706e-02	ci left: 9.583324e-04	ci right 1.048392e-03	k: 1925	n:1920000
Cons ci ratio: 5.059397e-03	ci left: 2.375856e-01	ci right 2.387912e-01	k: 457321	n:1920000
KS ci ratio: 1.087682e-01	ci left: 6.392645e-04	ci right 7.132967e-04	k: 1297	n:1920000
PRIM2   1920000 perm   1863 sec   (1031 perm/sec)   p_kst 6.755208e-04   p_cons 2.381880e-01   p_joint 1.002604e-03

Joint ci ratio: 8.974494e-02	ci left: 9.432359e-04	ci right 1.032366e-03	k: 1905	n:1930000
Cons ci ratio: 5.046084e-03	ci left: 2.376007e-01	ci right 2.388032e-01	k: 459729	n:1930000
KS ci ratio: 1.085593e-01	ci left: 6.384725e-04	ci right 7.122619e-04	k: 1302	n:1930000
PRIM2   1930000 perm   1879 sec   (1027 perm/sec)   p_kst 6.746114e-04   p_cons 2.382016e-01   p_joint 9.870466e-04

Joint ci ratio: 9.026815e-02	ci left: 9.272886e-04	ci right 1.015449e-03	k: 1883	n:1940000
Cons ci ratio: 5.032612e-03	ci left: 2.376347e-01	ci right 2.388341e-01	k: 462174	n:1940000
KS ci ratio: 1.082275e-01	ci left: 6.391934e-04	ci right 7.128259e-04	k: 1310	n:1940000
PRIM2   1940000 perm   1896 sec   (1023 perm/sec)   p_kst 6.752577e-04   p_cons 2.382340e-01   p_joint 9.706186e-04

Joint ci ratio: 9.129267e-02	ci left: 9.014832e-04	ci right 9.882150e-04	k: 1841	n:1950000
Cons ci ratio: 5.019140e-03	ci left: 2.376760e-01	ci right 2.388724e-01	k: 464634	n:1950000
KS ci ratio: 1.080629e-01	ci left: 6.379112e-04	ci right 7.112771e-04	k: 1314	n:1950000
PRIM2   1950000 perm   1912 sec   (1020 perm/sec)   p_kst 6.738462e-04   p_cons 2.382738e-01   p_joint 9.441026e-04

Joint ci ratio: 9.114443e-02	ci left: 8.998751e-04	ci right 9.863042e-04	k: 1847	n:1960000
Cons ci ratio: 5.006072e-03	ci left: 2.376955e-01	ci right 2.388889e-01	k: 467052	n:1960000
KS ci ratio: 1.078172e-01	ci left: 6.376351e-04	ci right 7.107920e-04	k: 1320	n:1960000
PRIM2   1960000 perm   1929 sec   (1016 perm/sec)   p_kst 6.734694e-04   p_cons 2.382918e-01   p_joint 9.423469e-04

Joint ci ratio: 9.094782e-02	ci left: 8.992757e-04	ci right 9.854510e-04	k: 1855	n:1970000
Cons ci ratio: 4.992631e-03	ci left: 2.377493e-01	ci right 2.389398e-01	k: 469538	n:1970000
KS ci ratio: 1.076138e-01	ci left: 6.368681e-04	ci right 7.097904e-04	k: 1325	n:1970000
PRIM2   1970000 perm   1946 sec   (1013 perm/sec)   p_kst 6.725888e-04   p_cons 2.383442e-01   p_joint 9.416244e-04

Joint ci ratio: 8.303843e-02	ci left: 1.077550e-03	ci right 1.171394e-03	k: 2225	n:1980000
Cons ci ratio: 4.980093e-03	ci left: 2.377445e-01	ci right 2.389320e-01	k: 471909	n:1980000
KS ci ratio: 1.074115e-01	ci left: 6.361089e-04	ci right 7.087987e-04	k: 1330	n:1980000
PRIM2   1980000 perm   1963 sec   (1009 perm/sec)   p_kst 6.717172e-04   p_cons 2.383379e-01   p_joint 1.123737e-03

Joint ci ratio: 8.281549e-02	ci left: 1.078040e-03	ci right 1.171663e-03	k: 2237	n:1990000
Cons ci ratio: 4.967719e-03	ci left: 2.377348e-01	ci right 2.389192e-01	k: 474270	n:1990000
KS ci ratio: 1.070502e-01	ci left: 6.373137e-04	ci right 7.098808e-04	k: 1339	n:1990000
PRIM2   1990000 perm   1980 sec   (1005 perm/sec)   p_kst 6.728643e-04   p_cons 2.383266e-01   p_joint 1.124121e-03

Joint ci ratio: 8.316991e-02	ci left: 1.063347e-03	ci right 1.156108e-03	k: 2218	n:2000000
Cons ci ratio: 4.955470e-03	ci left: 2.377227e-01	ci right 2.389041e-01	k: 476626	n:2000000
KS ci ratio: 1.067716e-01	ci left: 6.375336e-04	ci right 7.099249e-04	k: 1346	n:2000000
PRIM2   2000000 perm   1997 sec   (1002 perm/sec)   p_kst 6.730000e-04   p_cons 2.383130e-01   p_joint 1.109000e-03

Joint ci ratio: 8.300180e-02	ci left: 1.062441e-03	ci right 1.154927e-03	k: 2227	n:2010000
Cons ci ratio: 4.943074e-03	ci left: 2.377280e-01	ci right 2.389065e-01	k: 479017	n:2010000
KS ci ratio: 1.066135e-01	ci left: 6.362987e-04	ci right 7.084361e-04	k: 1350	n:2010000
PRIM2   2010000 perm   2014 sec   (998 perm/sec)   p_kst 6.716418e-04   p_cons 2.383169e-01   p_joint 1.107960e-03

Joint ci ratio: 8.290895e-02	ci left: 1.059605e-03	ci right 1.151736e-03	k: 2232	n:2020000
Cons ci ratio: 4.930670e-03	ci left: 2.377408e-01	ci right 2.389164e-01	k: 481423	n:2020000
KS ci ratio: 1.064954e-01	ci left: 6.345943e-04	ci right 7.064537e-04	k: 1353	n:2020000
PRIM2   2020000 perm   2031 sec   (994 perm/sec)   p_kst 6.698020e-04   p_cons 2.383282e-01   p_joint 1.104950e-03

Joint ci ratio: 8.298362e-02	ci left: 1.052456e-03	ci right 1.144051e-03	k: 2228	n:2030000
Cons ci ratio: 4.918126e-03	ci left: 2.377707e-01	ci right 2.389434e-01	k: 483864	n:2030000
KS ci ratio: 1.062994e-01	ci left: 6.338657e-04	ci right 7.055023e-04	k: 1358	n:2030000
PRIM2   2030000 perm   2049 sec   (991 perm/sec)   p_kst 6.689655e-04   p_cons 2.383567e-01   p_joint 1.097537e-03

Joint ci ratio: 8.279812e-02	ci left: 1.052097e-03	ci right 1.143447e-03	k: 2238	n:2040000
Cons ci ratio: 4.906266e-03	ci left: 2.377566e-01	ci right 2.389265e-01	k: 486216	n:2040000
KS ci ratio: 1.059879e-01	ci left: 6.345760e-04	ci right 7.060695e-04	k: 1366	n:2040000
PRIM2   2040000 perm   2066 sec   (987 perm/sec)   p_kst 6.696078e-04   p_cons 2.383412e-01   p_joint 1.097059e-03

Joint ci ratio: 8.455560e-02	ci left: 1.003024e-03	ci right 1.092053e-03	k: 2146	n:2050000
Cons ci ratio: 4.894609e-03	ci left: 2.377340e-01	ci right 2.389009e-01	k: 488550	n:2050000
KS ci ratio: 1.056406e-01	ci left: 6.357545e-04	ci right 7.071317e-04	k: 1375	n:2050000
PRIM2   2050000 perm   2083 sec   (984 perm/sec)   p_kst 6.707317e-04   p_cons 2.383171e-01   p_joint 1.046829e-03

Joint ci ratio: 8.447708e-02	ci left: 1.000056e-03	ci right 1.088735e-03	k: 2150	n:2060000
Cons ci ratio: 4.883016e-03	ci left: 2.377130e-01	ci right 2.388771e-01	k: 490887	n:2060000
KS ci ratio: 1.055257e-01	ci left: 6.340862e-04	ci right 7.051938e-04	k: 1378	n:2060000
PRIM2   2060000 perm   2102 sec   (980 perm/sec)   p_kst 6.689320e-04   p_cons 2.382947e-01   p_joint 1.043689e-03

Joint ci ratio: 8.507325e-02	ci left: 9.810390e-04	ci right 1.068676e-03	k: 2120	n:2070000
Cons ci ratio: 4.871317e-03	ci left: 2.377062e-01	ci right 2.388675e-01	k: 493253	n:2070000
KS ci ratio: 1.053350e-01	ci left: 6.333747e-04	ci right 7.042662e-04	k: 1383	n:2070000
PRIM2   2070000 perm   2119 sec   (977 perm/sec)   p_kst 6.681159e-04   p_cons 2.382865e-01   p_joint 1.024155e-03

Joint ci ratio: 8.582611e-02	ci left: 9.589136e-04	ci right 1.045370e-03	k: 2083	n:2080000
Cons ci ratio: 4.859702e-03	ci left: 2.376995e-01	ci right 2.388579e-01	k: 495619	n:2080000
KS ci ratio: 1.050696e-01	ci left: 6.336065e-04	ci right 7.043342e-04	k: 1390	n:2080000
PRIM2   2080000 perm   2137 sec   (973 perm/sec)   p_kst 6.682692e-04   p_cons 2.382784e-01   p_joint 1.001442e-03

Joint ci ratio: 8.558003e-02	ci left: 9.599441e-04	ci right 1.046233e-03	k: 2095	n:2090000
Cons ci ratio: 4.848060e-03	ci left: 2.377010e-01	ci right 2.388567e-01	k: 498002	n:2090000
KS ci ratio: 1.048062e-01	ci left: 6.338363e-04	ci right 7.044013e-04	k: 1397	n:2090000
PRIM2   2090000 perm   2155 sec   (970 perm/sec)   p_kst 6.684211e-04   p_cons 2.382785e-01   p_joint 1.002392e-03

Joint ci ratio: 8.543755e-02	ci left: 9.586350e-04	ci right 1.044655e-03	k: 2102	n:2100000
Cons ci ratio: 4.836718e-03	ci left: 2.376863e-01	ci right 2.388392e-01	k: 500351	n:2100000
KS ci ratio: 1.046940e-01	ci left: 6.322091e-04	ci right 7.025130e-04	k: 1400	n:2100000
PRIM2   2100000 perm   2173 sec   (966 perm/sec)   p_kst 6.666667e-04   p_cons 2.382624e-01   p_joint 1.000952e-03

Joint ci ratio: 8.517463e-02	ci left: 9.601214e-04	ci right 1.045997e-03	k: 2115	n:2110000
Cons ci ratio: 4.825694e-03	ci left: 2.376538e-01	ci right 2.388038e-01	k: 502662	n:2110000
KS ci ratio: 1.043223e-01	ci left: 6.338283e-04	ci right 7.040467e-04	k: 1410	n:2110000
PRIM2   2110000 perm   2191 sec   (963 perm/sec)   p_kst 6.682464e-04   p_cons 2.382284e-01   p_joint 1.002370e-03

Joint ci ratio: 8.507428e-02	ci left: 9.579008e-04	ci right 1.043472e-03	k: 2120	n:2120000
Cons ci ratio: 4.814620e-03	ci left: 2.376309e-01	ci right 2.387783e-01	k: 504993	n:2120000
KS ci ratio: 1.041380e-01	ci left: 6.331356e-04	ci right 7.031457e-04	k: 1415	n:2120000
PRIM2   2120000 perm   2209 sec   (960 perm/sec)   p_kst 6.674528e-04   p_cons 2.382042e-01   p_joint 1.000000e-03

Joint ci ratio: 8.489437e-02	ci left: 9.575391e-04	ci right 1.042888e-03	k: 2129	n:2130000
Cons ci ratio: 4.803672e-03	ci left: 2.376046e-01	ci right 2.387492e-01	k: 507316	n:2130000
KS ci ratio: 1.039181e-01	ci left: 6.329067e-04	ci right 7.027347e-04	k: 1421	n:2130000
PRIM2   2130000 perm   2228 sec   (956 perm/sec)   p_kst 6.671362e-04   p_cons 2.381765e-01   p_joint 9.995305e-04

Joint ci ratio: 8.473543e-02	ci left: 9.567237e-04	ci right 1.041832e-03	k: 2137	n:2140000
Cons ci ratio: 4.792545e-03	ci left: 2.375976e-01	ci right 2.387395e-01	k: 509680	n:2140000
KS ci ratio: 1.036996e-01	ci left: 6.326802e-04	ci right 7.023274e-04	k: 1427	n:2140000
PRIM2   2140000 perm   2247 sec   (953 perm/sec)   p_kst 6.668224e-04   p_cons 2.381682e-01   p_joint 9.985981e-04

Joint ci ratio: 8.465640e-02	ci left: 9.540948e-04	ci right 1.038886e-03	k: 2141	n:2150000
Cons ci ratio: 4.781740e-03	ci left: 2.375722e-01	ci right 2.387113e-01	k: 512004	n:2150000
KS ci ratio: 1.035185e-01	ci left: 6.320028e-04	ci right 7.014466e-04	k: 1432	n:2150000
PRIM2   2150000 perm   2265 sec   (949 perm/sec)   p_kst 6.660465e-04   p_cons 2.381414e-01   p_joint 9.958140e-04

Joint ci ratio: 8.442022e-02	ci left: 9.551158e-04	ci right 1.039750e-03	k: 2153	n:2160000
Cons ci ratio: 4.770661e-03	ci left: 2.375733e-01	ci right 2.387098e-01	k: 514385	n:2160000
KS ci ratio: 1.032307e-01	ci left: 6.326848e-04	ci right 7.019986e-04	k: 1440	n:2160000
PRIM2   2160000 perm   2283 sec   (946 perm/sec)   p_kst 6.666667e-04   p_cons 2.381412e-01   p_joint 9.967593e-04

Joint ci ratio: 8.416656e-02	ci left: 9.565789e-04	ci right 1.041075e-03	k: 2166	n:2170000
Cons ci ratio: 4.759671e-03	ci left: 2.375735e-01	ci right 2.387074e-01	k: 516764	n:2170000
KS ci ratio: 1.029453e-01	ci left: 6.333608e-04	ci right 7.025452e-04	k: 1448	n:2170000
PRIM2   2170000 perm   2301 sec   (943 perm/sec)   p_kst 6.672811e-04   p_cons 2.381401e-01   p_joint 9.981567e-04

Joint ci ratio: 8.403100e-02	ci left: 9.553344e-04	ci right 1.039578e-03	k: 2173	n:2180000
Cons ci ratio: 4.748546e-03	ci left: 2.375897e-01	ci right 2.387211e-01	k: 519178	n:2180000
KS ci ratio: 1.028390e-01	ci left: 6.317962e-04	ci right 7.007341e-04	k: 1451	n:2180000
PRIM2   2180000 perm   2320 sec   (940 perm/sec)   p_kst 6.655963e-04   p_cons 2.381550e-01   p_joint 9.967890e-04

Joint ci ratio: 8.381920e-02	ci left: 9.558895e-04	ci right 1.039960e-03	k: 2184	n:2190000
Cons ci ratio: 4.737999e-03	ci left: 2.375675e-01	ci right 2.386962e-01	k: 521508	n:2190000
KS ci ratio: 1.026272e-01	ci left: 6.315806e-04	ci right 7.003445e-04	k: 1457	n:2190000
PRIM2   2190000 perm   2339 sec   (936 perm/sec)   p_kst 6.652968e-04   p_cons 2.381315e-01   p_joint 9.972603e-04

Joint ci ratio: 8.366621e-02	ci left: 9.551048e-04	ci right 1.038945e-03	k: 2192	n:2200000
Cons ci ratio: 4.727369e-03	ci left: 2.375573e-01	ci right 2.386834e-01	k: 523864	n:2200000
KS ci ratio: 1.023119e-01	ci left: 6.326959e-04	ci right 7.013568e-04	k: 1466	n:2200000
PRIM2   2200000 perm   2358 sec   (933 perm/sec)   p_kst 6.663636e-04   p_cons 2.381200e-01   p_joint 9.963636e-04

Joint ci ratio: 8.360917e-02	ci left: 9.521121e-04	ci right 1.035630e-03	k: 2195	n:2210000
Cons ci ratio: 4.716998e-03	ci left: 2.375327e-01	ci right 2.386562e-01	k: 526188	n:2210000
KS ci ratio: 1.022075e-01	ci left: 6.311557e-04	ci right 6.995755e-04	k: 1469	n:2210000
PRIM2   2210000 perm   2376 sec   (930 perm/sec)   p_kst 6.647059e-04   p_cons 2.380941e-01   p_joint 9.932127e-04

Joint ci ratio: 7.486887e-02	ci left: 1.187150e-03	ci right 1.279925e-03	k: 2737	n:2220000
Cons ci ratio: 4.706303e-03	ci left: 2.375385e-01	ci right 2.386595e-01	k: 528579	n:2220000
KS ci ratio: 1.018616e-01	ci left: 6.327022e-04	ci right 7.010436e-04	k: 1479	n:2220000
PRIM2   2220000 perm   2396 sec   (927 perm/sec)   p_kst 6.662162e-04   p_cons 2.380986e-01   p_joint 1.232883e-03

Joint ci ratio: 7.491018e-02	ci left: 1.180506e-03	ci right 1.272815e-03	k: 2734	n:2230000
Cons ci ratio: 4.695815e-03	ci left: 2.375339e-01	ci right 2.386524e-01	k: 530947	n:2230000
KS ci ratio: 1.014850e-01	ci left: 6.346723e-04	ci right 7.029580e-04	k: 1490	n:2230000
PRIM2   2230000 perm   2415 sec   (923 perm/sec)   p_kst 6.681614e-04   p_cons 2.380928e-01   p_joint 1.226009e-03

Joint ci ratio: 7.466479e-02	ci left: 1.183121e-03	ci right 1.275319e-03	k: 2752	n:2240000
Cons ci ratio: 4.685523e-03	ci left: 2.375196e-01	ci right 2.386355e-01	k: 533293	n:2240000
KS ci ratio: 1.011126e-01	ci left: 6.366253e-04	ci right 7.048549e-04	k: 1501	n:2240000
PRIM2   2240000 perm   2434 sec   (920 perm/sec)   p_kst 6.700893e-04   p_cons 2.380772e-01   p_joint 1.228571e-03

Joint ci ratio: 7.452959e-02	ci left: 1.182224e-03	ci right 1.274178e-03	k: 2762	n:2250000
Cons ci ratio: 4.675636e-03	ci left: 2.374792e-01	ci right 2.385926e-01	k: 535580	n:2250000
KS ci ratio: 1.008778e-01	ci left: 6.368284e-04	ci right 7.049118e-04	k: 1508	n:2250000
PRIM2   2250000 perm   2453 sec   (917 perm/sec)   p_kst 6.702222e-04   p_cons 2.380356e-01   p_joint 1.227556e-03

Joint ci ratio: 7.621941e-02	ci left: 1.124461e-03	ci right 1.213993e-03	k: 2641	n:2260000
Cons ci ratio: 4.665532e-03	ci left: 2.374608e-01	ci right 2.385717e-01	k: 537916	n:2260000
KS ci ratio: 1.007111e-01	ci left: 6.361672e-04	ci right 7.040609e-04	k: 1513	n:2260000
PRIM2   2260000 perm   2472 sec   (914 perm/sec)   p_kst 6.694690e-04   p_cons 2.380159e-01   p_joint 1.168584e-03

Joint ci ratio: 7.611871e-02	ci left: 1.122532e-03	ci right 1.211788e-03	k: 2648	n:2270000
Cons ci ratio: 4.655443e-03	ci left: 2.374466e-01	ci right 2.385550e-01	k: 540261	n:2270000
KS ci ratio: 1.006780e-01	ci left: 6.337941e-04	ci right 7.014110e-04	k: 1514	n:2270000
PRIM2   2270000 perm   2492 sec   (911 perm/sec)   p_kst 6.669604e-04   p_cons 2.380004e-01   p_joint 1.166520e-03

Joint ci ratio: 7.652489e-02	ci left: 1.105562e-03	ci right 1.193958e-03	k: 2620	n:2280000
Cons ci ratio: 4.645425e-03	ci left: 2.374320e-01	ci right 2.385380e-01	k: 542605	n:2280000
KS ci ratio: 1.004793e-01	ci left: 6.335797e-04	ci right 7.010324e-04	k: 1520	n:2280000
PRIM2   2280000 perm   2511 sec   (908 perm/sec)   p_kst 6.666667e-04   p_cons 2.379846e-01   p_joint 1.149123e-03

Joint ci ratio: 7.640842e-02	ci left: 1.104161e-03	ci right 1.192305e-03	k: 2628	n:2290000
Cons ci ratio: 4.635527e-03	ci left: 2.374132e-01	ci right 2.385167e-01	k: 544939	n:2290000
KS ci ratio: 1.003475e-01	ci left: 6.325158e-04	ci right 6.997617e-04	k: 1524	n:2290000
PRIM2   2290000 perm   2531 sec   (905 perm/sec)   p_kst 6.655022e-04   p_cons 2.379646e-01   p_joint 1.147598e-03

Joint ci ratio: 7.723658e-02	ci left: 1.075480e-03	ci right 1.162306e-03	k: 2572	n:2300000
Cons ci ratio: 4.558577e-03	ci left: 2.427312e-01	ci right 2.438407e-01	k: 559557	n:2300000
KS ci ratio: 1.001179e-01	ci left: 6.327329e-04	ci right 6.998390e-04	k: 1531	n:2300000
PRIM2   2300000 perm   2550 sec   (902 perm/sec)   p_kst 6.656522e-04   p_cons 2.432857e-01   p_joint 1.118261e-03

Joint ci ratio: 7.704217e-02	ci left: 1.076343e-03	ci right 1.163010e-03	k: 2585	n:2310000
Cons ci ratio: 4.548560e-03	ci left: 2.427438e-01	ci right 2.438508e-01	k: 562016	n:2310000
KS ci ratio: 9.985753e-02	ci left: 6.333704e-04	ci right 7.003592e-04	k: 1539	n:2310000
PRIM2   2310000 perm   2570 sec   (899 perm/sec)   p_kst 6.662338e-04   p_cons 2.432970e-01   p_joint 1.119048e-03

Outputting figure to mutsig2_images.part000000000137/PRIM2.13_1582_2310000_0.00066623_0.2433_0.001119.png
                gene_name: PRIM2
               theta_stop: 0.100 
                    nperm: 2310000 
                     p_ks: 0.00067 
        ci_ks_bounds_left: 0.00063 
       ci_ks_bounds_right: 0.00070 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.0011 
     ci_joint_bounds_left: 0.0011 
    ci_joint_bounds_right: 0.0012 

Current progress: 4 percent done.
PRDM9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.783012e-02	ci left: 8.210683e-01	ci right 8.359398e-01	k: 8286	n:10000
Cons ci ratio: 1.425160e-02	ci left: 8.768454e-01	ci right 8.895304e-01	k: 8833	n:10000
KS ci ratio: 2.607094e-02	ci left: 6.841568e-01	ci right 7.023305e-01	k: 6933	n:10000
PRDM9   10000 perm   2 sec   (4810 perm/sec)   p_kst 6.933000e-01   p_cons 8.833000e-01   p_joint 8.286000e-01

Outputting figure to mutsig2_images.part000000000137/PRDM9.14_2725_10000_0.6933_0.8833_0.8286.png
                gene_name: PRDM9
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 5 percent done.
PREX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.411746e-02	ci left: 7.165376e-01	ci right 7.341309e-01	k: 7254	n:10000
Cons ci ratio: 1.217355e-02	ci left: 9.063796e-01	ci right 9.175790e-01	k: 9121	n:10000
KS ci ratio: 3.790644e-02	ci left: 5.068520e-01	ci right 5.265383e-01	k: 5167	n:10000
PREX1   10000 perm   2 sec   (4619 perm/sec)   p_kst 5.167000e-01   p_cons 9.121000e-01   p_joint 7.254000e-01

Outputting figure to mutsig2_images.part000000000137/PREX1.14_5140_10000_0.5167_0.9121_0.7254.png
                gene_name: PREX1
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 7 percent done.
PRG4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.602909e-02	ci left: 2.019537e-01	ci right 2.180156e-01	k: 2099	n:10000
Cons ci ratio: 1.066901e-02	ci left: 9.259590e-01	ci right 9.359882e-01	k: 9311	n:10000
KS ci ratio: 1.712220e-01	ci left: 4.552219e-02	ci right 5.414247e-02	k: 497	n:10000
PRG4   10000 perm   2 sec   (4490 perm/sec)   p_kst 4.970000e-02   p_cons 9.311000e-01   p_joint 2.099000e-01

Joint ci ratio: 7.563504e-02	ci left: 1.139039e-01	ci right 1.229073e-01	k: 2367	n:20000
Cons ci ratio: 7.295424e-03	ci left: 9.317508e-01	ci right 9.386220e-01	k: 18705	n:20000
KS ci ratio: 1.212672e-01	ci left: 4.663162e-02	ci right 5.270016e-02	k: 992	n:20000
PRG4   20000 perm   5 sec   (4161 perm/sec)   p_kst 4.960000e-02   p_cons 9.352500e-01   p_joint 1.183500e-01

Joint ci ratio: 5.893896e-02	ci left: 1.246997e-01	ci right 1.323057e-01	k: 3854	n:30000
Cons ci ratio: 5.994537e-03	ci left: 9.316074e-01	ci right 9.372414e-01	k: 28034	n:30000
KS ci ratio: 9.924309e-02	ci left: 4.697490e-02	ci right 5.191282e-02	k: 1482	n:30000
PRG4   30000 perm   7 sec   (4029 perm/sec)   p_kst 4.940000e-02   p_cons 9.344667e-01   p_joint 1.284667e-01

Outputting figure to mutsig2_images.part000000000137/PRG4.13_4263_30000_0.0494_0.93447_0.12847.png
                gene_name: PRG4
               theta_stop: 0.099 
                    nperm: 30000 
                     p_ks: 0.049 
        ci_ks_bounds_left: 0.047 
       ci_ks_bounds_right: 0.052 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 9 percent done.
PRKDC
Processing conservation and coverage...
78% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.647003e-02	ci left: 6.776064e-01	ci right 6.958847e-01	k: 6868	n:10000
Cons ci ratio: 2.709323e-02	ci left: 6.674321e-01	ci right 6.858649e-01	k: 6767	n:10000
KS ci ratio: 4.960770e-02	ci left: 3.747510e-01	ci right 3.939164e-01	k: 3843	n:10000
PRKDC   10000 perm   3 sec   (3188 perm/sec)   p_kst 3.843000e-01   p_cons 6.767000e-01   p_joint 6.868000e-01

Outputting figure to mutsig2_images.part000000000137/PRKDC.12_12730_10000_0.3843_0.6767_0.6868.png
                gene_name: PRKDC
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 11 percent done.
PRKD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.767052e-01	ci left: 4.274287e-02	ci right 5.112360e-02	k: 468	n:10000
Cons ci ratio: 3.920006e-01	ci left: 7.963073e-03	ci right 1.193024e-02	k: 98	n:10000
KS ci ratio: 4.852468e-02	ci left: 3.852013e-01	ci right 4.044600e-01	k: 3948	n:10000
PRKD1   10000 perm   2 sec   (5286 perm/sec)   p_kst 3.948000e-01   p_cons 9.800000e-03   p_joint 4.680000e-02

Joint ci ratio: 1.519588e-01	ci left: 2.974850e-02	ci right 3.468873e-02	k: 643	n:20000
Cons ci ratio: 2.876468e-01	ci left: 7.877125e-03	ci right 1.056846e-02	k: 183	n:20000
KS ci ratio: 3.472459e-02	ci left: 3.823844e-01	ci right 3.959478e-01	k: 7783	n:20000
PRKD1   20000 perm   4 sec   (4805 perm/sec)   p_kst 3.891500e-01   p_cons 9.150000e-03   p_joint 3.215000e-02

Joint ci ratio: 7.863341e-02	ci left: 7.348400e-02	ci right 7.953165e-02	k: 2294	n:30000
Cons ci ratio: 2.315018e-01	ci left: 8.370517e-03	ci right 1.059270e-02	k: 283	n:30000
KS ci ratio: 2.948372e-02	ci left: 3.652638e-01	ci right 3.762279e-01	k: 11122	n:30000
PRKD1   30000 perm   7 sec   (4613 perm/sec)   p_kst 3.707333e-01   p_cons 9.433333e-03   p_joint 7.646667e-02

Joint ci ratio: 1.025743e-01	ci left: 3.341535e-02	ci right 3.705253e-02	k: 1408	n:40000
Cons ci ratio: 2.142406e-01	ci left: 7.410577e-03	ci right 9.211899e-03	k: 331	n:40000
KS ci ratio: 2.554002e-02	ci left: 3.658890e-01	ci right 3.753798e-01	k: 14825	n:40000
PRKD1   40000 perm   9 sec   (4488 perm/sec)   p_kst 3.706250e-01   p_cons 8.275000e-03   p_joint 3.520000e-02

Joint ci ratio: 9.108417e-02	ci left: 3.409069e-02	ci right 3.736350e-02	k: 1785	n:50000
Cons ci ratio: 1.918563e-01	ci left: 7.485326e-03	ci right 9.092548e-03	k: 413	n:50000
KS ci ratio: 2.293453e-02	ci left: 3.645487e-01	ci right 3.730265e-01	k: 18439	n:50000
PRKD1   50000 perm   11 sec   (4390 perm/sec)   p_kst 3.687800e-01   p_cons 8.260000e-03   p_joint 3.570000e-02

Joint ci ratio: 8.081505e-02	ci left: 3.620636e-02	ci right 3.927190e-02	k: 2263	n:60000
Cons ci ratio: 1.724990e-01	ci left: 7.796908e-03	ci right 9.284550e-03	k: 511	n:60000
KS ci ratio: 2.095276e-02	ci left: 3.645550e-01	ci right 3.722910e-01	k: 22105	n:60000
PRKD1   60000 perm   14 sec   (4309 perm/sec)   p_kst 3.684167e-01   p_cons 8.516667e-03   p_joint 3.771667e-02

Joint ci ratio: 9.829688e-02	ci left: 2.112125e-02	ci right 2.331860e-02	k: 1554	n:70000
Cons ci ratio: 1.596134e-01	ci left: 7.860658e-03	ci right 9.237688e-03	k: 597	n:70000
KS ci ratio: 1.849923e-02	ci left: 3.871544e-01	ci right 3.943976e-01	k: 27354	n:70000
PRKD1   70000 perm   17 sec   (4228 perm/sec)   p_kst 3.907714e-01   p_cons 8.528571e-03   p_joint 2.220000e-02

Joint ci ratio: 9.101372e-02	ci left: 2.163008e-02	ci right 2.370474e-02	k: 1812	n:80000
Cons ci ratio: 1.505799e-01	ci left: 7.767168e-03	ci right 9.043868e-03	k: 671	n:80000
KS ci ratio: 1.732574e-02	ci left: 3.868051e-01	ci right 3.935778e-01	k: 31215	n:80000
PRKD1   80000 perm   19 sec   (4152 perm/sec)   p_kst 3.901875e-01   p_cons 8.387500e-03   p_joint 2.265000e-02

Joint ci ratio: 7.875692e-02	ci left: 2.573282e-02	ci right 2.785339e-02	k: 2410	n:90000
Cons ci ratio: 1.399293e-01	ci left: 8.039244e-03	ci right 9.259409e-03	k: 777	n:90000
KS ci ratio: 1.633944e-02	ci left: 3.868669e-01	ci right 3.932513e-01	k: 35105	n:90000
PRKD1   90000 perm   22 sec   (4042 perm/sec)   p_kst 3.900556e-01   p_cons 8.633333e-03   p_joint 2.677778e-02

Joint ci ratio: 6.804669e-02	ci left: 3.102594e-02	ci right 3.322131e-02	k: 3211	n:100000
Cons ci ratio: 1.325512e-01	ci left: 8.095014e-03	ci right 9.253755e-03	k: 866	n:100000
KS ci ratio: 1.548457e-02	ci left: 3.875344e-01	ci right 3.935920e-01	k: 39056	n:100000
PRKD1   100000 perm   25 sec   (3976 perm/sec)   p_kst 3.905600e-01   p_cons 8.660000e-03   p_joint 3.211000e-02

Joint ci ratio: 6.333332e-02	ci left: 3.258765e-02	ci right 3.472794e-02	k: 3701	n:110000
Cons ci ratio: 1.261626e-01	ci left: 8.150832e-03	ci right 9.257123e-03	k: 956	n:110000
KS ci ratio: 1.475401e-02	ci left: 3.879966e-01	ci right 3.937727e-01	k: 42997	n:110000
PRKD1   110000 perm   28 sec   (3913 perm/sec)   p_kst 3.908818e-01   p_cons 8.690909e-03   p_joint 3.364545e-02

Joint ci ratio: 6.277205e-02	ci left: 3.048610e-02	ci right 3.246996e-02	k: 3776	n:120000
Cons ci ratio: 1.217959e-01	ci left: 8.036811e-03	ci right 9.087146e-03	k: 1026	n:120000
KS ci ratio: 1.416376e-02	ci left: 3.868477e-01	ci right 3.923743e-01	k: 46753	n:120000
PRKD1   120000 perm   31 sec   (3822 perm/sec)   p_kst 3.896083e-01   p_cons 8.550000e-03   p_joint 3.146667e-02

Joint ci ratio: 6.705445e-02	ci left: 2.475577e-02	ci right 2.648087e-02	k: 3329	n:130000
Cons ci ratio: 1.175831e-01	ci left: 7.978233e-03	ci right 8.982339e-03	k: 1101	n:130000
KS ci ratio: 1.358747e-02	ci left: 3.876776e-01	ci right 3.929888e-01	k: 50743	n:130000
PRKD1   130000 perm   35 sec   (3744 perm/sec)   p_kst 3.903308e-01   p_cons 8.469231e-03   p_joint 2.560769e-02

Joint ci ratio: 5.977824e-02	ci left: 2.890846e-02	ci right 3.069680e-02	k: 4171	n:140000
Cons ci ratio: 1.130072e-01	ci left: 8.039631e-03	ci right 9.009461e-03	k: 1192	n:140000
KS ci ratio: 1.310056e-02	ci left: 3.875080e-01	ci right 3.926251e-01	k: 54609	n:140000
PRKD1   140000 perm   38 sec   (3691 perm/sec)   p_kst 3.900643e-01   p_cons 8.514286e-03   p_joint 2.979286e-02

Joint ci ratio: 5.807344e-02	ci left: 2.862321e-02	ci right 3.034171e-02	k: 4421	n:150000
Cons ci ratio: 1.090985e-01	ci left: 8.067553e-03	ci right 9.004926e-03	k: 1279	n:150000
KS ci ratio: 1.264655e-02	ci left: 3.879633e-01	ci right 3.929076e-01	k: 58565	n:150000
PRKD1   150000 perm   41 sec   (3641 perm/sec)   p_kst 3.904333e-01   p_cons 8.526667e-03   p_joint 2.947333e-02

Joint ci ratio: 5.245146e-02	ci left: 3.284580e-02	ci right 3.462115e-02	k: 5396	n:160000
Cons ci ratio: 1.056472e-01	ci left: 8.080318e-03	ci right 8.987626e-03	k: 1364	n:160000
KS ci ratio: 1.224792e-02	ci left: 3.879273e-01	ci right 3.927141e-01	k: 62451	n:160000
PRKD1   160000 perm   45 sec   (3593 perm/sec)   p_kst 3.903187e-01   p_cons 8.525000e-03   p_joint 3.372500e-02

Joint ci ratio: 5.132382e-02	ci left: 3.232433e-02	ci right 3.403281e-02	k: 5639	n:170000
Cons ci ratio: 1.017982e-01	ci left: 8.206658e-03	ci right 9.092574e-03	k: 1469	n:170000
KS ci ratio: 1.189197e-02	ci left: 3.876099e-01	ci right 3.922527e-01	k: 66288	n:170000
PRKD1   170000 perm   48 sec   (3545 perm/sec)   p_kst 3.899294e-01   p_cons 8.641176e-03   p_joint 3.317059e-02

Joint ci ratio: 4.960252e-02	ci left: 3.270093e-02	ci right 3.436969e-02	k: 6035	n:180000
Cons ci ratio: 9.868962e-02	ci left: 8.259874e-03	ci right 9.122728e-03	k: 1563	n:180000
KS ci ratio: 1.155669e-02	ci left: 3.876847e-01	ci right 3.921966e-01	k: 70189	n:180000
PRKD1   180000 perm   51 sec   (3498 perm/sec)   p_kst 3.899389e-01   p_cons 8.683333e-03   p_joint 3.352778e-02

Outputting figure to mutsig2_images.part000000000137/PRKD1.11_2811_180000_0.38994_0.0086833_0.033528.png
                gene_name: PRKD1
               theta_stop: 0.099 
                    nperm: 180000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.0087 
      ci_cons_bounds_left: 0.0083 
     ci_cons_bounds_right: 0.0091 
                  p_joint: 0.034 
     ci_joint_bounds_left: 0.033 
    ci_joint_bounds_right: 0.034 

Current progress: 13 percent done.
PRKCG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.118228e-02	ci left: 7.656735e-01	ci right 7.821666e-01	k: 7740	n:10000
Cons ci ratio: 2.503333e-02	ci left: 7.012988e-01	ci right 7.191786e-01	k: 7103	n:10000
KS ci ratio: 3.685020e-02	ci left: 5.209610e-01	ci right 5.406210e-01	k: 5308	n:10000
PRKCG   10000 perm   2 sec   (5426 perm/sec)   p_kst 5.308000e-01   p_cons 7.103000e-01   p_joint 7.740000e-01

Outputting figure to mutsig2_images.part000000000137/PRKCG.9_2166_10000_0.5308_0.7103_0.774.png
                gene_name: PRKCG
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 15 percent done.
PRIC285
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.964342e-02	ci left: 4.844537e-01	ci right 5.041496e-01	k: 4943	n:10000
Cons ci ratio: 8.423637e-02	ci left: 1.704491e-01	ci right 1.855389e-01	k: 1779	n:10000
KS ci ratio: 1.579224e-02	ci left: 8.534524e-01	ci right 8.671370e-01	k: 8604	n:10000
PRIC285   10000 perm   2 sec   (4106 perm/sec)   p_kst 8.604000e-01   p_cons 1.779000e-01   p_joint 4.943000e-01

Outputting figure to mutsig2_images.part000000000137/PRIC285.8_8049_10000_0.8604_0.1779_0.4943.png
                gene_name: PRIC285
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 16 percent done.
PRB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.460418e-01	ci left: 6.227288e-02	ci right 7.218104e-02	k: 671	n:10000
Cons ci ratio: 7.691072e-02	ci left: 1.982083e-01	ci right 2.141632e-01	k: 2061	n:10000
KS ci ratio: 2.162892e-01	ci left: 2.835310e-02	ci right 3.532314e-02	k: 317	n:10000
PRB2   10000 perm   2 sec   (5436 perm/sec)   p_kst 3.170000e-02   p_cons 2.061000e-01   p_joint 6.710000e-02

Joint ci ratio: 1.619766e-01	ci left: 2.614160e-02	ci right 3.079684e-02	k: 568	n:20000
Cons ci ratio: 5.472764e-02	ci left: 1.985325e-01	ci right 2.097536e-01	k: 4082	n:20000
KS ci ratio: 1.625657e-01	ci left: 2.594951e-02	ci right 3.058899e-02	k: 564	n:20000
PRB2   20000 perm   4 sec   (4926 perm/sec)   p_kst 2.820000e-02   p_cons 2.041000e-01   p_joint 2.840000e-02

Joint ci ratio: 1.054507e-01	ci left: 4.170676e-02	ci right 4.638206e-02	k: 1320	n:30000
Cons ci ratio: 4.484848e-02	ci left: 1.983945e-01	ci right 2.075297e-01	k: 6088	n:30000
KS ci ratio: 1.328564e-01	ci left: 2.632361e-02	ci right 3.010183e-02	k: 845	n:30000
PRB2   30000 perm   6 sec   (4706 perm/sec)   p_kst 2.816667e-02   p_cons 2.029333e-01   p_joint 4.400000e-02

Joint ci ratio: 1.142265e-01	ci left: 2.696406e-02	ci right 3.025485e-02	k: 1143	n:40000
Cons ci ratio: 3.723374e-02	ci left: 2.129190e-01	ci right 2.210221e-01	k: 8678	n:40000
KS ci ratio: 1.155858e-01	ci left: 2.633224e-02	ci right 2.958677e-02	k: 1117	n:40000
PRB2   40000 perm   9 sec   (4561 perm/sec)   p_kst 2.792500e-02   p_cons 2.169500e-01   p_joint 2.857500e-02

Joint ci ratio: 8.881407e-02	ci left: 3.583208e-02	ci right 3.918189e-02	k: 1874	n:50000
Cons ci ratio: 3.327891e-02	ci left: 2.135922e-01	ci right 2.208406e-01	k: 10860	n:50000
KS ci ratio: 1.042109e-01	ci left: 2.608406e-02	ci right 2.897115e-02	k: 1375	n:50000
PRB2   50000 perm   11 sec   (4454 perm/sec)   p_kst 2.750000e-02   p_cons 2.172000e-01   p_joint 3.748000e-02

Joint ci ratio: 8.690170e-02	ci left: 3.137281e-02	ci right 3.423928e-02	k: 1967	n:60000
Cons ci ratio: 3.046329e-02	ci left: 2.129779e-01	ci right 2.195829e-01	k: 12976	n:60000
KS ci ratio: 9.585599e-02	ci left: 2.581533e-02	ci right 2.843068e-02	k: 1626	n:60000
PRB2   60000 perm   14 sec   (4363 perm/sec)   p_kst 2.710000e-02   p_cons 2.162667e-01   p_joint 3.278333e-02

Outputting figure to mutsig2_images.part000000000137/PRB2.7_1263_60000_0.0271_0.21627_0.032783.png
                gene_name: PRB2
               theta_stop: 0.096 
                    nperm: 60000 
                     p_ks: 0.027 
        ci_ks_bounds_left: 0.026 
       ci_ks_bounds_right: 0.028 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.033 
     ci_joint_bounds_left: 0.031 
    ci_joint_bounds_right: 0.034 

Current progress: 18 percent done.
PRICKLE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.257135e-02	ci left: 9.009330e-01	ci right 9.124288e-01	k: 9068	n:10000
Cons ci ratio: 3.441262e-02	ci left: 5.549149e-01	ci right 5.744474e-01	k: 5647	n:10000
KS ci ratio: 9.830757e-03	ci left: 9.360983e-01	ci right 9.454429e-01	k: 9409	n:10000
PRICKLE1   10000 perm   2 sec   (5272 perm/sec)   p_kst 9.409000e-01   p_cons 5.647000e-01   p_joint 9.068000e-01

Outputting figure to mutsig2_images.part000000000137/PRICKLE1.7_2524_10000_0.9409_0.5647_0.9068.png
                gene_name: PRICKLE1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 20 percent done.
PRKCB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.560300e-02	ci left: 2.543910e-01	ci right 2.717472e-01	k: 2630	n:10000
Cons ci ratio: 1.032384e-01	ci left: 1.194577e-01	ci right 1.325610e-01	k: 1259	n:10000
KS ci ratio: 4.282578e-02	ci left: 4.460026e-01	ci right 4.656231e-01	k: 4558	n:10000
PRKCB   10000 perm   2 sec   (5310 perm/sec)   p_kst 4.558000e-01   p_cons 1.259000e-01   p_joint 2.630000e-01

Joint ci ratio: 3.687417e-02	ci left: 3.543392e-01	ci right 3.677012e-01	k: 7220	n:20000
Cons ci ratio: 7.064720e-02	ci left: 1.286671e-01	ci right 1.381397e-01	k: 2667	n:20000
KS ci ratio: 2.864379e-02	ci left: 4.766020e-01	ci right 4.905027e-01	k: 9671	n:20000
PRKCB   20000 perm   4 sec   (4780 perm/sec)   p_kst 4.835500e-01   p_cons 1.333500e-01   p_joint 3.610000e-01

Outputting figure to mutsig2_images.part000000000137/PRKCB.7_2247_20000_0.48355_0.13335_0.361.png
                gene_name: PRKCB
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 22 percent done.
PRKRIR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.358687e-02	ci left: 8.865717e-01	ci right 8.987985e-01	k: 8928	n:10000
Cons ci ratio: 3.565409e-02	ci left: 5.373814e-01	ci right 5.569911e-01	k: 5472	n:10000
KS ci ratio: 3.103201e-02	ci left: 6.050792e-01	ci right 6.242539e-01	k: 6147	n:10000
PRKRIR   10000 perm   2 sec   (5361 perm/sec)   p_kst 6.147000e-01   p_cons 5.472000e-01   p_joint 8.928000e-01

Outputting figure to mutsig2_images.part000000000137/PRKRIR.7_2306_10000_0.6147_0.5472_0.8928.png
                gene_name: PRKRIR
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 24 percent done.
PRDM10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.076980e-02	ci left: 3.639075e-01	ci right 3.829663e-01	k: 3734	n:10000
Cons ci ratio: 1.050099e-01	ci left: 1.158415e-01	ci right 1.287794e-01	k: 1222	n:10000
KS ci ratio: 2.803927e-02	ci left: 6.521295e-01	ci right 6.707764e-01	k: 6615	n:10000
PRDM10   10000 perm   2 sec   (4952 perm/sec)   p_kst 6.615000e-01   p_cons 1.222000e-01   p_joint 3.734000e-01

Joint ci ratio: 4.089892e-02	ci left: 3.082662e-01	ci right 3.211877e-01	k: 6294	n:20000
Cons ci ratio: 7.702532e-02	ci left: 1.102166e-01	ci right 1.190958e-01	k: 2292	n:20000
KS ci ratio: 2.030775e-02	ci left: 6.440462e-01	ci right 6.573100e-01	k: 13014	n:20000
PRDM10   20000 perm   4 sec   (4526 perm/sec)   p_kst 6.507000e-01   p_cons 1.146000e-01   p_joint 3.147000e-01

Outputting figure to mutsig2_images.part000000000137/PRDM10.6_3603_20000_0.6507_0.1146_0.3147.png
                gene_name: PRDM10
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 25 percent done.
PRDM13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.160471e-02	ci left: 2.792365e-01	ci right 2.970871e-01	k: 2881	n:10000
Cons ci ratio: 4.070444e-02	ci left: 4.712639e-01	ci right 4.909471e-01	k: 4811	n:10000
KS ci ratio: 7.336085e-02	ci left: 2.138864e-01	ci right 2.302758e-01	k: 2220	n:10000
PRDM13   10000 perm   2 sec   (5236 perm/sec)   p_kst 2.220000e-01   p_cons 4.811000e-01   p_joint 2.881000e-01

Outputting figure to mutsig2_images.part000000000137/PRDM13.6_2140_10000_0.222_0.4811_0.2881.png
                gene_name: PRDM13
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 27 percent done.
PRDM16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.639027e-02	ci left: 3.165168e-01	ci right 3.349849e-01	k: 3257	n:10000
Cons ci ratio: 8.366514e-02	ci left: 1.724157e-01	ci right 1.875712e-01	k: 1799	n:10000
KS ci ratio: 3.787610e-02	ci left: 5.072521e-01	ci right 5.269379e-01	k: 5171	n:10000
PRDM16   10000 perm   2 sec   (4931 perm/sec)   p_kst 5.171000e-01   p_cons 1.799000e-01   p_joint 3.257000e-01

Outputting figure to mutsig2_images.part000000000137/PRDM16.6_3899_10000_0.5171_0.1799_0.3257.png
                gene_name: PRDM16
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 29 percent done.
PRDM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.556815e-02	ci left: 8.569213e-01	ci right 8.704660e-01	k: 8638	n:10000
KS ci ratio: 1.691241e-02	ci left: 8.358217e-01	ci right 8.501778e-01	k: 8431	n:10000
PRDM2   10000 perm   2 sec   (4757 perm/sec)   p_kst 8.431000e-01   p_cons 8.638000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000137/PRDM2.6_5259_10000_0.8431_0.8638_1.png
                gene_name: PRDM2
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 31 percent done.
PRKG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.004187e-02	ci left: 4.794567e-01	ci right 4.991495e-01	k: 4893	n:10000
Cons ci ratio: 2.045457e-02	ci left: 7.778289e-01	ci right 7.940042e-01	k: 7860	n:10000
KS ci ratio: 6.329851e-02	ci left: 2.683438e-01	ci right 2.859862e-01	k: 2771	n:10000
PRKG1   10000 perm   2 sec   (5036 perm/sec)   p_kst 2.771000e-01   p_cons 7.860000e-01   p_joint 4.893000e-01

Outputting figure to mutsig2_images.part000000000137/PRKG1.6_2403_10000_0.2771_0.786_0.4893.png
                gene_name: PRKG1
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 33 percent done.
PRDM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.261065e-02	ci left: 4.484977e-01	ci right 4.681266e-01	k: 4583	n:10000
Cons ci ratio: 8.618673e-02	ci left: 1.639619e-01	ci right 1.788300e-01	k: 1713	n:10000
KS ci ratio: 1.037541e-02	ci left: 9.295765e-01	ci right 9.393685e-01	k: 9346	n:10000
PRDM1   10000 perm   2 sec   (5386 perm/sec)   p_kst 9.346000e-01   p_cons 1.713000e-01   p_joint 4.583000e-01

Outputting figure to mutsig2_images.part000000000137/PRDM1.5_2519_10000_0.9346_0.1713_0.4583.png
                gene_name: PRDM1
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 35 percent done.
PRDM5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.393891e-02	ci left: 8.814508e-01	ci right 8.939223e-01	k: 8878	n:10000
Cons ci ratio: 3.184346e-02	ci left: 5.927292e-01	ci right 6.120111e-01	k: 6024	n:10000
KS ci ratio: 3.833363e-02	ci left: 5.012506e-01	ci right 5.209430e-01	k: 5111	n:10000
PRDM5   10000 perm   2 sec   (5841 perm/sec)   p_kst 5.111000e-01   p_cons 6.024000e-01   p_joint 8.878000e-01

Outputting figure to mutsig2_images.part000000000137/PRDM5.5_1957_10000_0.5111_0.6024_0.8878.png
                gene_name: PRDM5
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 36 percent done.
PRKAA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.347016e-02	ci left: 4.386187e-01	ci right 4.582113e-01	k: 4484	n:10000
Cons ci ratio: 1.085277e-01	ci left: 1.091029e-01	ci right 1.217221e-01	k: 1153	n:10000
KS ci ratio: 1.980869e-02	ci left: 7.885747e-01	ci right 8.044522e-01	k: 7966	n:10000
PRKAA2   10000 perm   2 sec   (5686 perm/sec)   p_kst 7.966000e-01   p_cons 1.153000e-01   p_joint 4.484000e-01

Joint ci ratio: 2.841539e-02	ci left: 4.805999e-01	ci right 4.945038e-01	k: 9751	n:20000
Cons ci ratio: 7.781324e-02	ci left: 1.082015e-01	ci right 1.170115e-01	k: 2251	n:20000
KS ci ratio: 1.501446e-02	ci left: 7.672814e-01	ci right 7.789391e-01	k: 15463	n:20000
PRKAA2   20000 perm   4 sec   (5131 perm/sec)   p_kst 7.731500e-01   p_cons 1.125500e-01   p_joint 4.875500e-01

Outputting figure to mutsig2_images.part000000000137/PRKAA2.5_1695_20000_0.77315_0.11255_0.48755.png
                gene_name: PRKAA2
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.49 

Current progress: 38 percent done.
PRKCA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.374251e-02	ci left: 7.227983e-01	ci right 7.402667e-01	k: 7316	n:10000
Cons ci ratio: 9.971200e-03	ci left: 9.344406e-01	ci right 9.439015e-01	k: 9393	n:10000
KS ci ratio: 3.077061e-02	ci left: 6.090969e-01	ci right 6.282339e-01	k: 6187	n:10000
PRKCA   10000 perm   2 sec   (5345 perm/sec)   p_kst 6.187000e-01   p_cons 9.393000e-01   p_joint 7.316000e-01

Outputting figure to mutsig2_images.part000000000137/PRKCA.5_2087_10000_0.6187_0.9393_0.7316.png
                gene_name: PRKCA
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 40 percent done.
PRKCI
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.759865e-02	ci left: 1.953508e-01	ci right 2.112224e-01	k: 2032	n:10000
Cons ci ratio: 7.712279e-02	ci left: 1.973215e-01	ci right 2.132506e-01	k: 2052	n:10000
KS ci ratio: 6.601149e-02	ci left: 2.520172e-01	ci right 2.693224e-01	k: 2606	n:10000
PRKCI   10000 perm   2 sec   (5658 perm/sec)   p_kst 2.606000e-01   p_cons 2.052000e-01   p_joint 2.032000e-01

Outputting figure to mutsig2_images.part000000000137/PRKCI.5_1863_10000_0.2606_0.2052_0.2032.png
                gene_name: PRKCI
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 42 percent done.
PRB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.655618e-02	ci left: 6.761958e-01	ci right 6.944962e-01	k: 6854	n:10000
Cons ci ratio: 5.980736e-02	ci left: 2.914241e-01	ci right 3.094923e-01	k: 3004	n:10000
KS ci ratio: 2.550841e-02	ci left: 6.934318e-01	ci right 7.114501e-01	k: 7025	n:10000
PRB1   10000 perm   1 sec   (6699 perm/sec)   p_kst 7.025000e-01   p_cons 3.004000e-01   p_joint 6.854000e-01

Outputting figure to mutsig2_images.part000000000137/PRB1.4_1008_10000_0.7025_0.3004_0.6854.png
                gene_name: PRB1
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.69 

Current progress: 44 percent done.
PRB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.177929e-02	ci left: 4.582806e-01	ci right 4.779380e-01	k: 4681	n:10000
Cons ci ratio: 5.545381e-02	ci left: 3.238620e-01	ci right 3.424353e-01	k: 3331	n:10000
KS ci ratio: 3.489098e-02	ci left: 5.481004e-01	ci right 5.676658e-01	k: 5579	n:10000
PRB3   10000 perm   1 sec   (6709 perm/sec)   p_kst 5.579000e-01   p_cons 3.331000e-01   p_joint 4.681000e-01

Outputting figure to mutsig2_images.part000000000137/PRB3.4_946_10000_0.5579_0.3331_0.4681.png
                gene_name: PRB3
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 45 percent done.
PRB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.718438e-02	ci left: 5.164573e-01	ci right 5.361274e-01	k: 5263	n:10000
Cons ci ratio: 4.157851e-02	ci left: 4.606770e-01	ci right 4.803401e-01	k: 4705	n:10000
KS ci ratio: 4.574653e-02	ci left: 4.135897e-01	ci right 4.330550e-01	k: 4233	n:10000
PRB4   10000 perm   1 sec   (6828 perm/sec)   p_kst 4.233000e-01   p_cons 4.705000e-01   p_joint 5.263000e-01

Outputting figure to mutsig2_images.part000000000137/PRB4.4_756_10000_0.4233_0.4705_0.5263.png
                gene_name: PRB4
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 47 percent done.
PRDM11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.691388e-02	ci left: 6.703529e-01	ci right 6.887424e-01	k: 6796	n:10000
Cons ci ratio: 3.973073e-02	ci left: 4.833543e-01	ci right 5.030497e-01	k: 4932	n:10000
KS ci ratio: 3.262006e-02	ci left: 5.810878e-01	ci right 6.004593e-01	k: 5908	n:10000
PRDM11   10000 perm   2 sec   (6037 perm/sec)   p_kst 5.908000e-01   p_cons 4.932000e-01   p_joint 6.796000e-01

Outputting figure to mutsig2_images.part000000000137/PRDM11.4_1564_10000_0.5908_0.4932_0.6796.png
                gene_name: PRDM11
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 49 percent done.
PRDM15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.005397e-01	ci left: 3.310027e-02	ci right 4.057267e-02	k: 367	n:10000
Cons ci ratio: 1.938045e-01	ci left: 3.548103e-02	ci right 4.319029e-02	k: 392	n:10000
KS ci ratio: 8.327051e-02	ci left: 1.737925e-01	ci right 1.889935e-01	k: 1813	n:10000
PRDM15   10000 perm   2 sec   (5184 perm/sec)   p_kst 1.813000e-01   p_cons 3.920000e-02   p_joint 3.670000e-02

Joint ci ratio: 9.947345e-02	ci left: 6.845501e-02	ci right 7.567000e-02	k: 1440	n:20000
Cons ci ratio: 1.340536e-01	ci left: 3.824541e-02	ci right 4.378904e-02	k: 819	n:20000
KS ci ratio: 5.799528e-02	ci left: 1.805294e-01	ci right 1.913620e-01	k: 3718	n:20000
PRDM15   20000 perm   4 sec   (4669 perm/sec)   p_kst 1.859000e-01   p_cons 4.095000e-02   p_joint 7.200000e-02

Joint ci ratio: 6.369411e-02	ci left: 1.085181e-01	ci right 1.156905e-01	k: 3362	n:30000
Cons ci ratio: 1.093162e-01	ci left: 3.884897e-02	ci right 4.337378e-02	k: 1232	n:30000
KS ci ratio: 4.709151e-02	ci left: 1.831961e-01	ci right 1.920645e-01	k: 5628	n:30000
PRDM15   30000 perm   7 sec   (4474 perm/sec)   p_kst 1.876000e-01   p_cons 4.106667e-02   p_joint 1.120667e-01

Joint ci ratio: 6.526540e-02	ci left: 8.001871e-02	ci right 8.544204e-02	k: 3308	n:40000
Cons ci ratio: 9.389929e-02	ci left: 3.978626e-02	ci right 4.373062e-02	k: 1669	n:40000
KS ci ratio: 4.107019e-02	ci left: 1.816764e-01	ci right 1.893193e-01	k: 7419	n:40000
PRDM15   40000 perm   9 sec   (4348 perm/sec)   p_kst 1.854750e-01   p_cons 4.172500e-02   p_joint 8.270000e-02

Outputting figure to mutsig2_images.part000000000137/PRDM15.4_4648_40000_0.18548_0.041725_0.0827.png
                gene_name: PRDM15
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.042 
      ci_cons_bounds_left: 0.040 
     ci_cons_bounds_right: 0.044 
                  p_joint: 0.083 
     ci_joint_bounds_left: 0.080 
    ci_joint_bounds_right: 0.085 

Current progress: 51 percent done.
PREPL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.379388e-02	ci left: 5.638367e-01	ci right 5.833204e-01	k: 5736	n:10000
KS ci ratio: 1.003217e-02	ci left: 9.337157e-01	ci right 9.432269e-01	k: 9386	n:10000
PREPL   10000 perm   2 sec   (5758 perm/sec)   p_kst 9.386000e-01   p_cons 5.736000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000137/PREPL.4_2240_10000_0.9386_0.5736_1.png
                gene_name: PREPL
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 53 percent done.
PRKAG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.569156e-02	ci left: 6.904069e-01	ci right 7.084768e-01	k: 6995	n:10000
Cons ci ratio: 2.619972e-02	ci left: 6.820403e-01	ci right 7.002483e-01	k: 6912	n:10000
KS ci ratio: 3.721421e-02	ci left: 5.160570e-01	ci right 5.357279e-01	k: 5259	n:10000
PRKAG2   10000 perm   2 sec   (6267 perm/sec)   p_kst 5.259000e-01   p_cons 6.912000e-01   p_joint 6.995000e-01

Outputting figure to mutsig2_images.part000000000137/PRKAG2.4_1774_10000_0.5259_0.6912_0.6995.png
                gene_name: PRKAG2
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 55 percent done.
PRKCQ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.664465e-02	ci left: 1.624881e-01	ci right 1.773047e-01	k: 1698	n:10000
Cons ci ratio: 1.829303e-01	ci left: 3.987233e-02	ci right 4.799604e-02	k: 438	n:10000
KS ci ratio: 4.268795e-02	ci left: 4.475994e-01	ci right 4.672254e-01	k: 4574	n:10000
PRKCQ   10000 perm   2 sec   (6098 perm/sec)   p_kst 4.574000e-01   p_cons 4.380000e-02   p_joint 1.698000e-01

Joint ci ratio: 5.915100e-02	ci left: 1.746973e-01	ci right 1.853959e-01	k: 3600	n:20000
Cons ci ratio: 1.306830e-01	ci left: 4.023021e-02	ci right 4.590360e-02	k: 860	n:20000
KS ci ratio: 2.989721e-02	ci left: 4.552712e-01	ci right 4.691398e-01	k: 9244	n:20000
PRKCQ   20000 perm   4 sec   (5440 perm/sec)   p_kst 4.622000e-01   p_cons 4.300000e-02   p_joint 1.800000e-01

Joint ci ratio: 5.288962e-02	ci left: 1.506579e-01	ci right 1.588758e-01	k: 4642	n:30000
Cons ci ratio: 1.069847e-01	ci left: 4.053731e-02	ci right 4.515175e-02	k: 1284	n:30000
KS ci ratio: 2.433812e-02	ci left: 4.580441e-01	ci right 4.693630e-01	k: 13911	n:30000
PRKCQ   30000 perm   6 sec   (5146 perm/sec)   p_kst 4.637000e-01   p_cons 4.280000e-02   p_joint 1.547333e-01

Joint ci ratio: 4.073688e-02	ci left: 1.841317e-01	ci right 1.918136e-01	k: 7518	n:40000
Cons ci ratio: 9.263300e-02	ci left: 4.086166e-02	ci right 4.485505e-02	k: 1713	n:40000
KS ci ratio: 2.105760e-02	ci left: 4.592779e-01	ci right 4.690773e-01	k: 18567	n:40000
PRKCQ   40000 perm   8 sec   (5005 perm/sec)   p_kst 4.641750e-01   p_cons 4.282500e-02   p_joint 1.879500e-01

Outputting figure to mutsig2_images.part000000000137/PRKCQ.4_2189_40000_0.46418_0.042825_0.18795.png
                gene_name: PRKCQ
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.043 
      ci_cons_bounds_left: 0.041 
     ci_cons_bounds_right: 0.045 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 56 percent done.
PRKG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.734719e-02	ci left: 3.969510e-01	ci right 4.163034e-01	k: 4066	n:10000
Cons ci ratio: 3.986605e-02	ci left: 4.816553e-01	ci right 5.013497e-01	k: 4915	n:10000
KS ci ratio: 6.329851e-02	ci left: 2.683438e-01	ci right 2.859862e-01	k: 2771	n:10000
PRKG2   10000 perm   2 sec   (5451 perm/sec)   p_kst 2.771000e-01   p_cons 4.915000e-01   p_joint 4.066000e-01

Outputting figure to mutsig2_images.part000000000137/PRKG2.4_2361_10000_0.2771_0.4915_0.4066.png
                gene_name: PRKG2
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 58 percent done.
PRC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.248048e-02	ci left: 2.180307e-01	ci right 2.345290e-01	k: 2262	n:10000
Cons ci ratio: 4.460369e-02	ci left: 4.259515e-01	ci right 4.454860e-01	k: 4357	n:10000
KS ci ratio: 7.415534e-02	ci left: 2.102365e-01	ci right 2.265279e-01	k: 2183	n:10000
PRC1   10000 perm   2 sec   (5996 perm/sec)   p_kst 2.183000e-01   p_cons 4.357000e-01   p_joint 2.262000e-01

Outputting figure to mutsig2_images.part000000000137/PRC1.3_1923_10000_0.2183_0.4357_0.2262.png
                gene_name: PRC1
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 60 percent done.
PRCP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.849218e-01	ci left: 3.901215e-02	ci right 4.705680e-02	k: 429	n:10000
Cons ci ratio: 5.922919e-02	ci left: 2.954883e-01	ci right 3.136257e-01	k: 3045	n:10000
KS ci ratio: 2.301068e-01	ci left: 2.494902e-02	ci right 3.152965e-02	k: 281	n:10000
PRCP   10000 perm   2 sec   (6030 perm/sec)   p_kst 2.810000e-02   p_cons 3.045000e-01   p_joint 4.290000e-02

Joint ci ratio: 8.435431e-02	ci left: 9.332451e-02	ci right 1.015929e-01	k: 1948	n:20000
Cons ci ratio: 4.238105e-02	ci left: 2.932062e-01	ci right 3.059521e-01	k: 5991	n:20000
KS ci ratio: 1.573407e-01	ci left: 2.772743e-02	ci right 3.251047e-02	k: 601	n:20000
PRCP   20000 perm   4 sec   (5328 perm/sec)   p_kst 3.005000e-02   p_cons 2.995500e-01   p_joint 9.740000e-02

Joint ci ratio: 6.978492e-02	ci left: 9.183592e-02	ci right 9.850938e-02	k: 2854	n:30000
Cons ci ratio: 3.405138e-02	ci left: 3.011525e-01	ci right 3.116183e-01	k: 9191	n:30000
KS ci ratio: 1.291342e-01	ci left: 2.787259e-02	ci right 3.175251e-02	k: 893	n:30000
PRCP   30000 perm   6 sec   (5045 perm/sec)   p_kst 2.976667e-02   p_cons 3.063667e-01   p_joint 9.513333e-02

Joint ci ratio: 6.929527e-02	ci left: 7.150238e-02	ci right 7.665965e-02	k: 2962	n:40000
Cons ci ratio: 2.940288e-02	ci left: 3.031039e-01	ci right 3.121741e-01	k: 12305	n:40000
KS ci ratio: 1.130618e-01	ci left: 2.752316e-02	ci right 3.084566e-02	k: 1166	n:40000
PRCP   40000 perm   8 sec   (4923 perm/sec)   p_kst 2.915000e-02   p_cons 3.076250e-01   p_joint 7.405000e-02

Joint ci ratio: 6.135354e-02	ci left: 7.315952e-02	ci right 7.780991e-02	k: 3773	n:50000
Cons ci ratio: 2.638977e-02	ci left: 3.021215e-01	ci right 3.102210e-01	k: 15308	n:50000
KS ci ratio: 1.010456e-01	ci left: 2.774161e-02	ci right 3.071338e-02	k: 1460	n:50000
PRCP   50000 perm   10 sec   (4823 perm/sec)   p_kst 2.920000e-02   p_cons 3.061600e-01   p_joint 7.546000e-02

Joint ci ratio: 6.411340e-02	ci left: 5.676653e-02	ci right 6.054297e-02	k: 3518	n:60000
Cons ci ratio: 2.416893e-02	ci left: 3.011013e-01	ci right 3.084843e-01	k: 18287	n:60000
KS ci ratio: 8.832703e-02	ci left: 3.037772e-02	ci right 3.320114e-02	k: 1906	n:60000
PRCP   60000 perm   13 sec   (4741 perm/sec)   p_kst 3.176667e-02   p_cons 3.047833e-01   p_joint 5.863333e-02

Outputting figure to mutsig2_images.part000000000137/PRCP.3_1594_60000_0.031767_0.30478_0.058633.png
                gene_name: PRCP
               theta_stop: 0.088 
                    nperm: 60000 
                     p_ks: 0.032 
        ci_ks_bounds_left: 0.030 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.059 
     ci_joint_bounds_left: 0.057 
    ci_joint_bounds_right: 0.061 

Current progress: 62 percent done.
PRELP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.856597e-02	ci left: 8.090764e-01	ci right 8.243387e-01	k: 8168	n:10000
Cons ci ratio: 2.907922e-02	ci left: 6.355301e-01	ci right 6.543853e-01	k: 6450	n:10000
KS ci ratio: 2.366395e-02	ci left: 7.241112e-01	ci right 7.415529e-01	k: 7329	n:10000
PRELP   10000 perm   1 sec   (7068 perm/sec)   p_kst 7.329000e-01   p_cons 6.450000e-01   p_joint 8.168000e-01

Outputting figure to mutsig2_images.part000000000137/PRELP.3_1157_10000_0.7329_0.645_0.8168.png
                gene_name: PRELP
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 64 percent done.
PRH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.029581e-01	ci left: 1.200443e-01	ci right 1.331741e-01	k: 1265	n:10000
Cons ci ratio: 4.626559e-02	ci left: 4.081086e-01	ci right 4.275393e-01	k: 4178	n:10000
KS ci ratio: 1.910384e-01	ci left: 3.652992e-02	ci right 4.434069e-02	k: 403	n:10000
PRH2   10000 perm   1 sec   (6697 perm/sec)   p_kst 4.030000e-02   p_cons 4.178000e-01   p_joint 1.265000e-01

Joint ci ratio: 8.752461e-02	ci left: 8.714669e-02	ci right 9.517263e-02	k: 1822	n:20000
Cons ci ratio: 3.282893e-02	ci left: 4.093062e-01	ci right 4.230182e-01	k: 8323	n:20000
KS ci ratio: 1.362337e-01	ci left: 3.703607e-02	ci right 4.249877e-02	k: 794	n:20000
PRH2   20000 perm   3 sec   (6006 perm/sec)   p_kst 3.970000e-02   p_cons 4.161500e-01   p_joint 9.110000e-02

Joint ci ratio: 6.554150e-02	ci left: 1.030309e-01	ci right 1.100455e-01	k: 3195	n:30000
Cons ci ratio: 2.668912e-02	ci left: 4.126763e-01	ci right 4.238728e-01	k: 12548	n:30000
KS ci ratio: 1.119954e-01	ci left: 3.703198e-02	ci right 4.145782e-02	k: 1176	n:30000
PRH2   30000 perm   5 sec   (5713 perm/sec)   p_kst 3.920000e-02   p_cons 4.182667e-01   p_joint 1.065000e-01

Joint ci ratio: 5.184441e-02	ci left: 1.217985e-01	ci right 1.283060e-01	k: 5001	n:40000
Cons ci ratio: 2.319076e-02	ci left: 4.118123e-01	ci right 4.214998e-01	k: 16666	n:40000
KS ci ratio: 9.788187e-02	ci left: 3.665999e-02	ci right 4.045737e-02	k: 1541	n:40000
PRH2   40000 perm   7 sec   (5532 perm/sec)   p_kst 3.852500e-02   p_cons 4.166500e-01   p_joint 1.250250e-01

Outputting figure to mutsig2_images.part000000000137/PRH2.3_513_40000_0.038525_0.41665_0.12502.png
                gene_name: PRH2
               theta_stop: 0.098 
                    nperm: 40000 
                     p_ks: 0.039 
        ci_ks_bounds_left: 0.037 
       ci_ks_bounds_right: 0.040 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 65 percent done.
PRICKLE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.080238e-02	ci left: 4.700652e-01	ci right 4.897466e-01	k: 4799	n:10000
Cons ci ratio: 7.164216e-02	ci left: 2.220775e-01	ci right 2.386798e-01	k: 2303	n:10000
KS ci ratio: 5.182757e-02	ci left: 3.543616e-01	ci right 3.733178e-01	k: 3638	n:10000
PRICKLE2   10000 perm   2 sec   (5790 perm/sec)   p_kst 3.638000e-01   p_cons 2.303000e-01   p_joint 4.799000e-01

Outputting figure to mutsig2_images.part000000000137/PRICKLE2.3_2563_10000_0.3638_0.2303_0.4799.png
                gene_name: PRICKLE2
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 67 percent done.
PRIM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.409876e-02	ci left: 5.594255e-01	ci right 5.789342e-01	k: 5692	n:10000
KS ci ratio: 3.271458e-02	ci left: 5.796832e-01	ci right 5.990647e-01	k: 5894	n:10000
PRIM1   10000 perm   2 sec   (6408 perm/sec)   p_kst 5.894000e-01   p_cons 5.692000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000137/PRIM1.3_1315_10000_0.5894_0.5692_1.png
                gene_name: PRIM1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 69 percent done.
PRKACB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.120495e-02	ci left: 4.651709e-01	ci right 4.848436e-01	k: 4750	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
PRKACB   10000 perm   2 sec   (6594 perm/sec)   p_kst 1   p_cons 4.750000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000137/PRKACB.3_1300_10000_1_0.475_1.png
                gene_name: PRKACB
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.48 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
PRKAG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.111066e-02	ci left: 6.038741e-01	ci right 6.230598e-01	k: 6135	n:10000
Cons ci ratio: 5.621107e-02	ci left: 3.179062e-01	ci right 3.363946e-01	k: 3271	n:10000
KS ci ratio: 1.225679e-02	ci left: 9.052487e-01	ci right 9.165106e-01	k: 9110	n:10000
PRKAG3   10000 perm   2 sec   (6317 perm/sec)   p_kst 9.110000e-01   p_cons 3.271000e-01   p_joint 6.135000e-01

Outputting figure to mutsig2_images.part000000000137/PRKAG3.3_1522_10000_0.911_0.3271_0.6135.png
                gene_name: PRKAG3
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 73 percent done.
PRKCE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.929614e-02	ci left: 4.888518e-01	ci right 5.085490e-01	k: 4987	n:10000
KS ci ratio: 3.313530e-02	ci left: 5.734637e-01	ci right 5.928878e-01	k: 5832	n:10000
PRKCE   10000 perm   2 sec   (6090 perm/sec)   p_kst 5.832000e-01   p_cons 4.987000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000137/PRKCE.3_2274_10000_0.5832_0.4987_1.png
                gene_name: PRKCE
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
PRKD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.624928e-02	ci left: 8.463146e-01	ci right 8.602789e-01	k: 8534	n:10000
Cons ci ratio: 2.813948e-02	ci left: 6.505193e-01	ci right 6.691875e-01	k: 6599	n:10000
KS ci ratio: 3.393915e-02	ci left: 5.617312e-01	ci right 5.812271e-01	k: 5715	n:10000
PRKD2   10000 perm   2 sec   (5832 perm/sec)   p_kst 5.715000e-01   p_cons 6.599000e-01   p_joint 8.534000e-01

Outputting figure to mutsig2_images.part000000000137/PRKD2.3_2709_10000_0.5715_0.6599_0.8534.png
                gene_name: PRKD2
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 76 percent done.
PRAMEF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.890004e-02	ci left: 8.035925e-01	ci right 8.190257e-01	k: 8114	n:10000
KS ci ratio: 4.332111e-02	ci left: 4.403148e-01	ci right 4.599142e-01	k: 4501	n:10000
PRAMEF4   10000 perm   1 sec   (6667 perm/sec)   p_kst 4.501000e-01   p_cons 8.114000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000137/PRAMEF4.2_1449_10000_0.4501_0.8114_1.png
                gene_name: PRAMEF4
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
PRDM12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.097680e-01	ci left: 1.068582e-01	ci right 1.193681e-01	k: 1130	n:10000
Cons ci ratio: 1.451179e-01	ci left: 6.304562e-02	ci right 7.300781e-02	k: 679	n:10000
KS ci ratio: 1.619083e-02	ci left: 8.472320e-01	ci right 8.611609e-01	k: 8543	n:10000
PRDM12   10000 perm   1 sec   (7140 perm/sec)   p_kst 8.543000e-01   p_cons 6.790000e-02   p_joint 1.130000e-01

Joint ci ratio: 7.818539e-02	ci left: 1.072678e-01	ci right 1.160454e-01	k: 2232	n:20000
Cons ci ratio: 1.040180e-01	ci left: 6.284124e-02	ci right 6.978550e-02	k: 1325	n:20000
KS ci ratio: 1.151904e-02	ci left: 8.477627e-01	ci right 8.576345e-01	k: 17055	n:20000
PRDM12   20000 perm   3 sec   (6316 perm/sec)   p_kst 8.527500e-01   p_cons 6.625000e-02   p_joint 1.116000e-01

Joint ci ratio: 6.421136e-02	ci left: 1.069407e-01	ci right 1.140683e-01	k: 3314	n:30000
Cons ci ratio: 8.557791e-02	ci left: 6.256256e-02	ci right 6.818863e-02	k: 1960	n:30000
KS ci ratio: 9.360701e-03	ci left: 8.498860e-01	ci right 8.579120e-01	k: 25618	n:30000
PRDM12   30000 perm   5 sec   (5950 perm/sec)   p_kst 8.539333e-01   p_cons 6.533333e-02   p_joint 1.104667e-01

Outputting figure to mutsig2_images.part000000000137/PRDM12.2_1124_30000_0.85393_0.065333_0.11047.png
                gene_name: PRDM12
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.065 
      ci_cons_bounds_left: 0.063 
     ci_cons_bounds_right: 0.068 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 80 percent done.
PRDX6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.824899e-02	ci left: 8.142578e-01	ci right 8.293542e-01	k: 8219	n:10000
KS ci ratio: 8.609581e-02	ci left: 1.642567e-01	ci right 1.791350e-01	k: 1716	n:10000
PRDX6   10000 perm   1 sec   (7100 perm/sec)   p_kst 1.716000e-01   p_cons 8.219000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000137/PRDX6.2_695_10000_0.1716_0.8219_1.png
                gene_name: PRDX6
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
PRF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.557831e-02	ci left: 4.153838e-01	ci right 4.348599e-01	k: 4251	n:10000
KS ci ratio: 1.583820e-02	ci left: 8.527383e-01	ci right 8.664514e-01	k: 8597	n:10000
PRF1   10000 perm   2 sec   (6533 perm/sec)   p_kst 8.597000e-01   p_cons 4.251000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000137/PRF1.2_1676_10000_0.8597_0.4251_1.png
                gene_name: PRF1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.43 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
PRG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.273432e-02	ci left: 7.396724e-01	ci right 7.567828e-01	k: 7483	n:10000
KS ci ratio: 5.825115e-02	ci left: 3.025284e-01	ci right 3.207814e-01	k: 3116	n:10000
PRG2   10000 perm   1 sec   (7463 perm/sec)   p_kst 3.116000e-01   p_cons 7.483000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000137/PRG2.2_689_10000_0.3116_0.7483_1.png
                gene_name: PRG2
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 85 percent done.
PRICKLE3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.427985e-02	ci left: 5.568193e-01	ci right 5.763419e-01	k: 5666	n:10000
Cons ci ratio: 8.061926e-03	ci left: 9.554502e-01	ci right 9.632793e-01	k: 9595	n:10000
KS ci ratio: 8.487514e-02	ci left: 1.682863e-01	ci right 1.833030e-01	k: 1757	n:10000
PRICKLE3   10000 perm   2 sec   (6428 perm/sec)   p_kst 1.757000e-01   p_cons 9.595000e-01   p_joint 5.666000e-01

Outputting figure to mutsig2_images.part000000000137/PRICKLE3.2_1884_10000_0.1757_0.9595_0.5666.png
                gene_name: PRICKLE3
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 87 percent done.
PRIMA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.086875e-01	ci left: 1.088101e-01	ci right 1.214151e-01	k: 1150	n:10000
Cons ci ratio: 2.704991e-02	ci left: 6.681371e-01	ci right 6.865595e-01	k: 6774	n:10000
KS ci ratio: 3.618281e-01	ci left: 9.503508e-03	ci right 1.378807e-02	k: 115	n:10000
PRIMA1   10000 perm   1 sec   (7352 perm/sec)   p_kst 1.150000e-02   p_cons 6.774000e-01   p_joint 1.150000e-01

Joint ci ratio: 8.390194e-02	ci left: 9.425655e-02	ci right 1.025606e-01	k: 1967	n:20000
Cons ci ratio: 1.888976e-02	ci left: 6.763492e-01	ci right 6.892976e-01	k: 13657	n:20000
KS ci ratio: 2.483822e-01	ci left: 1.077173e-02	ci right 1.387247e-02	k: 245	n:20000
PRIMA1   20000 perm   3 sec   (6426 perm/sec)   p_kst 1.225000e-02   p_cons 6.828500e-01   p_joint 9.835000e-02

Joint ci ratio: 8.266141e-02	ci left: 6.684362e-02	ci right 7.264003e-02	k: 2091	n:30000
Cons ci ratio: 1.550733e-02	ci left: 6.751897e-01	ci right 6.857754e-01	k: 20415	n:30000
KS ci ratio: 2.056447e-01	ci left: 1.073536e-02	ci right 1.322716e-02	k: 358	n:30000
PRIMA1   30000 perm   5 sec   (6064 perm/sec)   p_kst 1.193333e-02   p_cons 6.805000e-01   p_joint 6.970000e-02

Joint ci ratio: 7.108616e-02	ci left: 6.813305e-02	ci right 7.317950e-02	k: 2825	n:40000
Cons ci ratio: 1.340743e-02	ci left: 6.766327e-01	ci right 6.857909e-01	k: 27249	n:40000
KS ci ratio: 1.759974e-01	ci left: 1.117113e-02	ci right 1.335053e-02	k: 489	n:40000
PRIMA1   40000 perm   7 sec   (5825 perm/sec)   p_kst 1.222500e-02   p_cons 6.812250e-01   p_joint 7.062500e-02

Joint ci ratio: 5.354907e-02	ci left: 9.420195e-02	ci right 9.940497e-02	k: 4839	n:50000
Cons ci ratio: 1.195462e-02	ci left: 6.784795e-01	ci right 6.866593e-01	k: 34129	n:50000
KS ci ratio: 1.574823e-01	ci left: 1.127539e-02	ci right 1.322185e-02	k: 611	n:50000
PRIMA1   50000 perm   9 sec   (5647 perm/sec)   p_kst 1.222000e-02   p_cons 6.825800e-01   p_joint 9.678000e-02

Joint ci ratio: 4.852809e-02	ci left: 9.569812e-02	ci right 1.004742e-01	k: 5884	n:60000
Cons ci ratio: 1.089114e-02	ci left: 6.797111e-01	ci right 6.871711e-01	k: 41007	n:60000
KS ci ratio: 1.443996e-01	ci left: 1.125657e-02	ci right 1.302442e-02	k: 727	n:60000
PRIMA1   60000 perm   11 sec   (5503 perm/sec)   p_kst 1.211667e-02   p_cons 6.834500e-01   p_joint 9.806667e-02

Joint ci ratio: 4.356175e-02	ci left: 1.014225e-01	ci right 1.059532e-01	k: 7257	n:70000
Cons ci ratio: 1.011706e-02	ci left: 6.785355e-01	ci right 6.854494e-01	k: 47740	n:70000
KS ci ratio: 1.323796e-01	ci left: 1.155188e-02	ci right 1.320320e-02	k: 865	n:70000
PRIMA1   70000 perm   13 sec   (5373 perm/sec)   p_kst 1.235714e-02   p_cons 6.820000e-01   p_joint 1.036714e-01

Joint ci ratio: 4.080558e-02	ci left: 1.013106e-01	ci right 1.055432e-01	k: 8273	n:80000
Cons ci ratio: 9.486843e-03	ci left: 6.776948e-01	ci right 6.841671e-01	k: 54475	n:80000
KS ci ratio: 1.245785e-01	ci left: 1.146289e-02	ci right 1.299779e-02	k: 977	n:80000
PRIMA1   80000 perm   15 sec   (5253 perm/sec)   p_kst 1.221250e-02   p_cons 6.809375e-01   p_joint 1.034125e-01

Joint ci ratio: 3.851401e-02	ci left: 1.012307e-01	ci right 1.052171e-01	k: 9289	n:90000
Cons ci ratio: 8.959702e-03	ci left: 6.771305e-01	ci right 6.832357e-01	k: 61217	n:90000
KS ci ratio: 1.180116e-01	ci left: 1.139591e-02	ci right 1.283579e-02	k: 1089	n:90000
PRIMA1   90000 perm   18 sec   (5143 perm/sec)   p_kst 1.210000e-02   p_cons 6.801889e-01   p_joint 1.032111e-01

Joint ci ratio: 3.667689e-02	ci left: 1.006366e-01	ci right 1.044065e-01	k: 10251	n:100000
Cons ci ratio: 8.514170e-03	ci left: 6.765573e-01	ci right 6.823522e-01	k: 67946	n:100000
KS ci ratio: 1.128126e-01	ci left: 1.125655e-02	ci right 1.261198e-02	k: 1192	n:100000
PRIMA1   100000 perm   20 sec   (5042 perm/sec)   p_kst 1.192000e-02   p_cons 6.794600e-01   p_joint 1.025100e-01

Joint ci ratio: 3.493072e-02	ci left: 1.009301e-01	ci right 1.045273e-01	k: 11299	n:110000
Cons ci ratio: 8.115846e-03	ci left: 6.768059e-01	ci right 6.823301e-01	k: 74753	n:110000
KS ci ratio: 1.076998e-01	ci left: 1.125869e-02	ci right 1.254905e-02	k: 1308	n:110000
PRIMA1   110000 perm   22 sec   (4944 perm/sec)   p_kst 1.189091e-02   p_cons 6.795727e-01   p_joint 1.027182e-01

Joint ci ratio: 3.343346e-02	ci left: 1.010623e-01	ci right 1.045069e-01	k: 12333	n:120000
Cons ci ratio: 7.780258e-03	ci left: 6.763668e-01	ci right 6.816579e-01	k: 81482	n:120000
KS ci ratio: 1.030782e-01	ci left: 1.129413e-02	ci right 1.252963e-02	k: 1428	n:120000
PRIMA1   120000 perm   25 sec   (4851 perm/sec)   p_kst 1.190000e-02   p_cons 6.790167e-01   p_joint 1.027750e-01

Joint ci ratio: 3.216322e-02	ci left: 1.008945e-01	ci right 1.042002e-01	k: 13330	n:130000
Cons ci ratio: 7.476638e-03	ci left: 6.763773e-01	ci right 6.814609e-01	k: 88260	n:130000
KS ci ratio: 9.926444e-02	ci left: 1.126508e-02	ci right 1.244915e-02	k: 1540	n:130000
PRIMA1   130000 perm   27 sec   (4762 perm/sec)   p_kst 1.184615e-02   p_cons 6.789231e-01   p_joint 1.025385e-01

Outputting figure to mutsig2_images.part000000000137/PRIMA1.2_478_130000_0.011846_0.67892_0.10254.png
                gene_name: PRIMA1
               theta_stop: 0.099 
                    nperm: 130000 
                     p_ks: 0.012 
        ci_ks_bounds_left: 0.011 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.10 

Current progress: 89 percent done.
PRKAR1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.483822e-01	ci left: 2.127733e-02	ci right 2.740406e-02	k: 242	n:10000
Cons ci ratio: 1.439852e-01	ci left: 6.401182e-02	ci right 7.404101e-02	k: 689	n:10000
KS ci ratio: 8.360851e-02	ci left: 1.726124e-01	ci right 1.877744e-01	k: 1801	n:10000
PRKAR1A   10000 perm   1 sec   (6753 perm/sec)   p_kst 1.801000e-01   p_cons 6.890000e-02   p_joint 2.420000e-02

Joint ci ratio: 1.670300e-01	ci left: 2.455782e-02	ci right 2.908116e-02	k: 535	n:20000
Cons ci ratio: 9.969730e-02	ci left: 6.816195e-02	ci right 7.536315e-02	k: 1434	n:20000
KS ci ratio: 5.909097e-02	ci left: 1.749938e-01	ci right 1.856993e-01	k: 3606	n:20000
PRKAR1A   20000 perm   3 sec   (6015 perm/sec)   p_kst 1.803000e-01   p_cons 7.170000e-02   p_joint 2.675000e-02

Joint ci ratio: 1.364677e-01	ci left: 2.493733e-02	ci right 2.862175e-02	k: 802	n:30000
Cons ci ratio: 8.143365e-02	ci left: 6.877282e-02	ci right 7.464378e-02	k: 2150	n:30000
KS ci ratio: 4.851879e-02	ci left: 1.743465e-01	ci right 1.830492e-01	k: 5360	n:30000
PRKAR1A   30000 perm   5 sec   (5727 perm/sec)   p_kst 1.786667e-01   p_cons 7.166667e-02   p_joint 2.673333e-02

Joint ci ratio: 1.198438e-01	ci left: 2.448676e-02	ci right 2.763256e-02	k: 1041	n:40000
Cons ci ratio: 7.109969e-02	ci left: 6.810846e-02	ci right 7.315409e-02	k: 2824	n:40000
KS ci ratio: 4.215871e-02	ci left: 1.739649e-01	ci right 1.814819e-01	k: 7108	n:40000
PRKAR1A   40000 perm   7 sec   (5539 perm/sec)   p_kst 1.777000e-01   p_cons 7.060000e-02   p_joint 2.602500e-02

Joint ci ratio: 1.058029e-01	ci left: 2.530453e-02	ci right 2.815078e-02	k: 1335	n:50000
Cons ci ratio: 6.312603e-02	ci left: 6.933532e-02	ci right 7.387457e-02	k: 3579	n:50000
KS ci ratio: 3.755449e-02	ci left: 1.755493e-01	ci right 1.822880e-01	k: 8945	n:50000
PRKAR1A   50000 perm   9 sec   (5388 perm/sec)   p_kst 1.789000e-01   p_cons 7.158000e-02   p_joint 2.670000e-02

Joint ci ratio: 9.772408e-02	ci left: 2.483892e-02	ci right 2.740719e-02	k: 1566	n:60000
Cons ci ratio: 5.766215e-02	ci left: 6.945077e-02	ci right 7.359079e-02	k: 4290	n:60000
KS ci ratio: 3.436082e-02	ci left: 1.751784e-01	ci right 1.813195e-01	k: 10694	n:60000
PRKAR1A   60000 perm   11 sec   (5258 perm/sec)   p_kst 1.782333e-01   p_cons 7.150000e-02   p_joint 2.610000e-02

Outputting figure to mutsig2_images.part000000000137/PRKAR1A.2_1186_60000_0.17823_0.0715_0.0261.png
                gene_name: PRKAR1A
               theta_stop: 0.098 
                    nperm: 60000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.071 
      ci_cons_bounds_left: 0.069 
     ci_cons_bounds_right: 0.074 
                  p_joint: 0.026 
     ci_joint_bounds_left: 0.025 
    ci_joint_bounds_right: 0.027 

Current progress: 91 percent done.
PRKAR1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.446737e-02	ci left: 1.696626e-01	ci right 1.847259e-01	k: 1771	n:10000
KS ci ratio: 8.585952e-03	ci left: 9.500226e-01	ci right 9.583102e-01	k: 9543	n:10000
PRKAR1B   10000 perm   1 sec   (6975 perm/sec)   p_kst 9.543000e-01   p_cons 1.771000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000137/PRKAR1B.2_1186_10000_0.9543_0.1771_1.png
                gene_name: PRKAR1B
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
PRKAR2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.976835e-02	ci left: 6.246718e-01	ci right 6.436500e-01	k: 6342	n:10000
KS ci ratio: 3.363528e-02	ci left: 5.661428e-01	ci right 5.856130e-01	k: 5759	n:10000
PRKAR2B   10000 perm   1 sec   (6828 perm/sec)   p_kst 5.759000e-01   p_cons 6.342000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000137/PRKAR2B.2_1301_10000_0.5759_0.6342_1.png
                gene_name: PRKAR2B
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
PRKCD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.974146e-02	ci left: 7.896903e-01	ci right 8.055359e-01	k: 7977	n:10000
KS ci ratio: 7.562442e-03	ci left: 9.603708e-01	ci right 9.677557e-01	k: 9642	n:10000
PRKCD   10000 perm   2 sec   (6293 perm/sec)   p_kst 9.642000e-01   p_cons 7.977000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000137/PRKCD.2_2099_10000_0.9642_0.7977_1.png
                gene_name: PRKCD
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
PRKCDBP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.093456e-02	ci left: 1.495278e-01	ci right 1.638728e-01	k: 1566	n:10000
Cons ci ratio: 4.737048e-03	ci left: 9.831763e-01	ci right 9.879347e-01	k: 9857	n:10000
KS ci ratio: 2.371212e-01	ci left: 2.344048e-02	ci right 2.983930e-02	k: 265	n:10000
PRKCDBP   10000 perm   1 sec   (6997 perm/sec)   p_kst 2.650000e-02   p_cons 9.857000e-01   p_joint 1.566000e-01

Joint ci ratio: 7.291909e-02	ci left: 1.216273e-01	ci right 1.308816e-01	k: 2524	n:20000
Cons ci ratio: 3.367679e-03	ci left: 9.837459e-01	ci right 9.871108e-01	k: 19710	n:20000
KS ci ratio: 1.656068e-01	ci left: 2.498955e-02	ci right 2.954929e-02	k: 544	n:20000
PRKCDBP   20000 perm   3 sec   (6226 perm/sec)   p_kst 2.720000e-02   p_cons 9.855000e-01   p_joint 1.262000e-01

Joint ci ratio: 5.922132e-02	ci left: 1.236466e-01	ci right 1.312257e-01	k: 3822	n:30000
Cons ci ratio: 2.706339e-03	ci left: 9.845360e-01	ci right 9.872354e-01	k: 29578	n:30000
KS ci ratio: 1.323742e-01	ci left: 2.651715e-02	ci right 3.030825e-02	k: 851	n:30000
PRKCDBP   30000 perm   5 sec   (5920 perm/sec)   p_kst 2.836667e-02   p_cons 9.859333e-01   p_joint 1.274000e-01

Joint ci ratio: 5.113415e-02	ci left: 1.248147e-01	ci right 1.313894e-01	k: 5123	n:40000
Cons ci ratio: 2.341699e-03	ci left: 9.847481e-01	ci right 9.870805e-01	k: 39438	n:40000
KS ci ratio: 1.153736e-01	ci left: 2.642943e-02	ci right 2.968957e-02	k: 1121	n:40000
PRKCDBP   40000 perm   7 sec   (5717 perm/sec)   p_kst 2.802500e-02   p_cons 9.859500e-01   p_joint 1.280750e-01

Joint ci ratio: 4.446270e-02	ci left: 1.315405e-01	ci right 1.375420e-01	k: 6726	n:50000
Cons ci ratio: 2.117405e-03	ci left: 9.845585e-01	ci right 9.866645e-01	k: 49282	n:50000
KS ci ratio: 1.033263e-01	ci left: 2.653244e-02	ci right 2.944271e-02	k: 1398	n:50000
PRKCDBP   50000 perm   9 sec   (5560 perm/sec)   p_kst 2.796000e-02   p_cons 9.856400e-01   p_joint 1.345200e-01

Joint ci ratio: 3.715532e-02	ci left: 1.535681e-01	ci right 1.593985e-01	k: 9388	n:60000
Cons ci ratio: 1.953515e-03	ci left: 9.843393e-01	ci right 9.862800e-01	k: 59120	n:60000
KS ci ratio: 9.437575e-02	ci left: 2.662937e-02	ci right 2.928322e-02	k: 1676	n:60000
PRKCDBP   60000 perm   11 sec   (5423 perm/sec)   p_kst 2.793333e-02   p_cons 9.853333e-01   p_joint 1.564667e-01

Outputting figure to mutsig2_images.part000000000137/PRKCDBP.2_794_60000_0.027933_0.98533_0.15647.png
                gene_name: PRKCDBP
               theta_stop: 0.094 
                    nperm: 60000 
                     p_ks: 0.028 
        ci_ks_bounds_left: 0.027 
       ci_ks_bounds_right: 0.029 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 98 percent done.
PRKD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.184266e-01	ci left: 2.778487e-02	ci right 3.469176e-02	k: 311	n:10000
Cons ci ratio: 2.097034e-02	ci left: 7.692178e-01	ci right 7.856203e-01	k: 7775	n:10000
KS ci ratio: 2.184266e-01	ci left: 2.778487e-02	ci right 3.469176e-02	k: 311	n:10000
PRKD3   10000 perm   2 sec   (6235 perm/sec)   p_kst 3.110000e-02   p_cons 7.775000e-01   p_joint 3.110000e-02

Joint ci ratio: 1.548392e-01	ci left: 2.864136e-02	ci right 3.349624e-02	k: 620	n:20000
Cons ci ratio: 1.542699e-02	ci left: 7.575478e-01	ci right 7.693755e-01	k: 15270	n:20000
KS ci ratio: 1.548392e-01	ci left: 2.864136e-02	ci right 3.349624e-02	k: 620	n:20000
PRKD3   20000 perm   4 sec   (5580 perm/sec)   p_kst 3.100000e-02   p_cons 7.635000e-01   p_joint 3.100000e-02

Joint ci ratio: 3.574772e-02	ci left: 2.809902e-01	ci right 2.912513e-01	k: 8583	n:30000
Cons ci ratio: 1.267165e-02	ci left: 7.564679e-01	ci right 7.661481e-01	k: 22840	n:30000
KS ci ratio: 1.247435e-01	ci left: 2.987554e-02	ci right 3.388246e-02	k: 955	n:30000
PRKD3   30000 perm   6 sec   (5298 perm/sec)   p_kst 3.183333e-02   p_cons 7.613333e-01   p_joint 2.861000e-01

Joint ci ratio: 1.084570e-01	ci left: 2.990726e-02	ci right 3.336117e-02	k: 1264	n:40000
Cons ci ratio: 1.096290e-02	ci left: 7.574934e-01	ci right 7.658685e-01	k: 30468	n:40000
KS ci ratio: 1.084570e-01	ci left: 2.990726e-02	ci right 3.336117e-02	k: 1264	n:40000
PRKD3   40000 perm   8 sec   (4972 perm/sec)   p_kst 3.160000e-02   p_cons 7.617000e-01   p_joint 3.160000e-02

Joint ci ratio: 9.561868e-02	ci left: 3.096291e-02	ci right 3.409168e-02	k: 1625	n:50000
Cons ci ratio: 9.820644e-03	ci left: 7.573775e-01	ci right 7.648721e-01	k: 38057	n:50000
KS ci ratio: 9.561868e-02	ci left: 3.096291e-02	ci right 3.409168e-02	k: 1625	n:50000
PRKD3   50000 perm   10 sec   (4870 perm/sec)   p_kst 3.250000e-02   p_cons 7.611400e-01   p_joint 3.250000e-02

Outputting figure to mutsig2_images.part000000000137/PRKD3.2_2745_50000_0.0325_0.76114_0.0325.png
                gene_name: PRKD3
               theta_stop: 0.096 
                    nperm: 50000 
                     p_ks: 0.033 
        ci_ks_bounds_left: 0.031 
       ci_ks_bounds_right: 0.034 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.033 
     ci_joint_bounds_left: 0.031 
    ci_joint_bounds_right: 0.034 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000137
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 137 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1726>
Subject: Job 8004448: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1726>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000138> was used as the working directory.
Started at Sun Nov 11 15:14:16 2012
Results reported at Sun Nov 11 15:20:15 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000138.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000138.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 138  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000138.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    346.31 sec.
    Max Memory :      4794 MB
    Max Swap   :      7031 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
138
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 138
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 138: processing genes 12395 - 12485
Calculating significance of each gene.
Using projection method.
12395	PRLHR	2.991944e-01
12396	PRLR	5.583838e-01
12397	PRM1	1
12398	PRM2	1
12399	PRM3	1
12400	PRMT1	1
12401	PRMT10	4.582529e-01
12402	PRMT2	4.128397e-01
12403	PRMT3	5.952103e-01
12404	PRMT5	7.420534e-01
12405	PRMT6	4.695899e-01
12406	PRMT7	1.581188e-01
12407	PRMT8	1.595116e-01
12408	PRND	2.613307e-01
12409	PRNP	4.499403e-01
12410	PROC	1
12411	PROCA1	1
12412	PROCR	1
12413	PRODH	6.162198e-01
12414	PRODH2	3.990166e-01
12415	PROK1	6.670646e-02
12416	PROK2	1
12417	PROKR1	3.791148e-01
12418	PROKR2	1
12419	PROL1	1
12420	PROM1	2.681499e-01
12421	PROM2	1
12422	PROP1	1
12423	PROS1	1.336395e-01
12424	PROSC	5.282305e-01
12425	PROX1	7.118536e-01
12426	PROX2	8.527958e-01
12427	PROZ	7.773169e-02
12428	PRPF18	1
12429	PRPF19	2.353897e-01
12430	PRPF3	9.078274e-01
12431	PRPF31	7.268923e-01
12432	PRPF38A	1
12433	PRPF38B	7.620942e-01
12434	PRPF39	1
12435	PRPF4	5.247785e-01
12436	PRPF40A	1.617261e-01
12437	PRPF40B	9.210186e-01
12438	PRPF4B	4.086793e-01
12439	PRPF6	9.329400e-01
12440	PRPF8	9.317702e-01
12441	PRPH	1
12442	PRPH2	1
12443	PRPS1	3.258752e-01
12444	PRPS1L1	1.497024e-01
12445	PRPS2	5.012468e-01
12446	PRPSAP1	6.324345e-01
12447	PRPSAP2	8.195036e-01
12448	PRR11	1.219754e-01
12449	PRR12	8.829939e-01
12450	PRR13	1
12451	PRR14	1
12452	PRR15	1
12453	PRR15L	1
12454	PRR16	3.576260e-01
12455	PRR18	1.425553e-01
12456	PRR19	6.383663e-01
12457	PRR21	3.224738e-01
12458	PRR22	1
12459	PRR23A	1
12460	PRR23B	1.311524e-04
12461	PRR23C	1
12462	PRR25	3.798109e-01
12463	PRR3	1
12464	PRR4	3.670185e-01
12465	PRR5	6.903249e-01
12466	PRR5-ARHGAP8	2.323840e-01
12467	PRR5L	1
12468	PRR7	1
12469	PRRC1	6.244731e-01
12470	PRRG1	8.467021e-02
12471	PRRG2	1
12472	PRRG3	1.272896e-01
12473	PRRG4	6.200477e-01
12474	PRRT1	1
12475	PRRT2	3.305065e-01
12476	PRRT3	1
12477	PRRX1	3.153063e-01
12478	PRRX2	1
12479	PRSS1	2.005222e-01
12480	PRSS12	2.757591e-01
12481	PRSS16	4.515024e-01
12482	PRSS2	1
12483	PRSS21	1
12484	PRSS22	3.702858e-01
12485	PRSS23	2.637355e-02
Done

Running MutSig 2:
Scatter job 138: processing genes 12395 - 12485
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
PRR23B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.624746e-02	ci left: 1.637654e-01	ci right 1.786266e-01	k: 1711	n:10000
Cons ci ratio: 4.731777e-02	ci left: 3.972498e-01	ci right 4.166044e-01	k: 4069	n:10000
KS ci ratio: 1.315040e-01	ci left: 7.620996e-02	ci right 8.703524e-02	k: 815	n:10000
PRR23B   10000 perm   2 sec   (6284 perm/sec)   p_kst 8.150000e-02   p_cons 4.069000e-01   p_joint 1.711000e-01

Joint ci ratio: 7.273787e-02	ci left: 1.221687e-01	ci right 1.314401e-01	k: 2535	n:20000
Cons ci ratio: 3.315191e-02	ci left: 4.045684e-01	ci right 4.182573e-01	k: 8228	n:20000
KS ci ratio: 9.129435e-02	ci left: 8.053403e-02	ci right 8.828730e-02	k: 1687	n:20000
PRR23B   20000 perm   6 sec   (3515 perm/sec)   p_kst 8.435000e-02   p_cons 4.114000e-01   p_joint 1.267500e-01

Outputting figure to mutsig2_images.part000000000138/PRR23B.9_802_20000_0.08435_0.4114_0.12675.png
                gene_name: PRR23B
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.084 
        ci_ks_bounds_left: 0.081 
       ci_ks_bounds_right: 0.088 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 2 percent done.
PRPF8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.233604e-02	ci left: 1.456039e-01	ci right 1.597991e-01	k: 1526	n:10000
Cons ci ratio: 1.772336e-02	ci left: 8.227970e-01	ci right 8.376101e-01	k: 8303	n:10000
KS ci ratio: 1.000817e-01	ci left: 1.263042e-01	ci right 1.397104e-01	k: 1329	n:10000
PRPF8   10000 perm   2 sec   (4292 perm/sec)   p_kst 1.329000e-01   p_cons 8.303000e-01   p_joint 1.526000e-01

Joint ci ratio: 6.584042e-02	ci left: 1.455706e-01	ci right 1.555312e-01	k: 3010	n:20000
Cons ci ratio: 1.250510e-02	ci left: 8.256321e-01	ci right 8.360716e-01	k: 16618	n:20000
KS ci ratio: 7.146855e-02	ci left: 1.260574e-01	ci right 1.354502e-01	k: 2614	n:20000
PRPF8   20000 perm   5 sec   (3991 perm/sec)   p_kst 1.307000e-01   p_cons 8.309000e-01   p_joint 1.505000e-01

Outputting figure to mutsig2_images.part000000000138/PRPF8.7_7176_20000_0.1307_0.8309_0.1505.png
                gene_name: PRPF8
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 5 percent done.
PRLR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.027334e-02	ci left: 9.308177e-01	ci right 9.405266e-01	k: 9358	n:10000
Cons ci ratio: 6.880239e-03	ci left: 9.666774e-01	ci right 9.734451e-01	k: 9702	n:10000
KS ci ratio: 2.628565e-02	ci left: 6.806294e-01	ci right 6.988600e-01	k: 6898	n:10000
PRLR   10000 perm   2 sec   (5561 perm/sec)   p_kst 6.898000e-01   p_cons 9.702000e-01   p_joint 9.358000e-01

Outputting figure to mutsig2_images.part000000000138/PRLR.6_1901_10000_0.6898_0.9702_0.9358.png
                gene_name: PRLR
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 7 percent done.
PRMT7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.725901e-02	ci left: 5.154566e-01	ci right 5.351287e-01	k: 5253	n:10000
Cons ci ratio: 8.257621e-02	ci left: 1.762516e-01	ci right 1.915330e-01	k: 1838	n:10000
KS ci ratio: 3.092077e-02	ci left: 6.067866e-01	ci right 6.259455e-01	k: 6164	n:10000
PRMT7   10000 perm   2 sec   (5800 perm/sec)   p_kst 6.164000e-01   p_cons 1.838000e-01   p_joint 5.253000e-01

Outputting figure to mutsig2_images.part000000000138/PRMT7.6_2147_10000_0.6164_0.1838_0.5253.png
                gene_name: PRMT7
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 9 percent done.
PRPF40A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.330158e-02	ci left: 7.301724e-01	ci right 7.474883e-01	k: 7389	n:10000
Cons ci ratio: 2.013815e-02	ci left: 7.830994e-01	ci right 7.991306e-01	k: 7912	n:10000
KS ci ratio: 3.600800e-02	ci left: 5.324742e-01	ci right 5.521012e-01	k: 5423	n:10000
PRPF40A   10000 perm   2 sec   (5429 perm/sec)   p_kst 5.423000e-01   p_cons 7.912000e-01   p_joint 7.389000e-01

Outputting figure to mutsig2_images.part000000000138/PRPF40A.6_2897_10000_0.5423_0.7912_0.7389.png
                gene_name: PRPF40A
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 12 percent done.
PRPF4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.261065e-02	ci left: 4.484977e-01	ci right 4.681266e-01	k: 4583	n:10000
Cons ci ratio: 2.389364e-02	ci left: 7.202736e-01	ci right 7.377928e-01	k: 7291	n:10000
KS ci ratio: 6.120178e-02	ci left: 2.819111e-01	ci right 2.998108e-01	k: 2908	n:10000
PRPF4B   10000 perm   2 sec   (5807 perm/sec)   p_kst 2.908000e-01   p_cons 7.291000e-01   p_joint 4.583000e-01

Outputting figure to mutsig2_images.part000000000138/PRPF4B.6_3084_10000_0.2908_0.7291_0.4583.png
                gene_name: PRPF4B
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 14 percent done.
PROS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.095497e-01	ci left: 1.072486e-01	ci right 1.197776e-01	k: 1134	n:10000
Cons ci ratio: 4.224355e-02	ci left: 4.527897e-01	ci right 4.724321e-01	k: 4626	n:10000
KS ci ratio: 1.775008e-01	ci left: 4.235985e-02	ci right 5.070688e-02	k: 464	n:10000
PROS1   10000 perm   2 sec   (5206 perm/sec)   p_kst 4.640000e-02   p_cons 4.626000e-01   p_joint 1.134000e-01

Joint ci ratio: 7.696846e-02	ci left: 1.103641e-01	ci right 1.192483e-01	k: 2295	n:20000
Cons ci ratio: 2.934094e-02	ci left: 4.646113e-01	ci right 4.784970e-01	k: 9431	n:20000
KS ci ratio: 1.257277e-01	ci left: 4.342888e-02	ci right 4.930391e-02	k: 926	n:20000
PROS1   20000 perm   4 sec   (4905 perm/sec)   p_kst 4.630000e-02   p_cons 4.715500e-01   p_joint 1.147500e-01

Joint ci ratio: 5.810308e-02	ci left: 1.278925e-01	ci right 1.355790e-01	k: 3951	n:30000
Cons ci ratio: 2.461722e-02	ci left: 4.523830e-01	ci right 4.636918e-01	k: 13741	n:30000
KS ci ratio: 1.027539e-01	ci left: 4.388449e-02	ci right 4.867054e-02	k: 1387	n:30000
PROS1   30000 perm   6 sec   (4816 perm/sec)   p_kst 4.623333e-02   p_cons 4.580333e-01   p_joint 1.317000e-01

Joint ci ratio: 5.834667e-02	ci left: 9.843368e-02	ci right 1.043743e-01	k: 4055	n:40000
Cons ci ratio: 2.123091e-02	ci left: 4.552063e-01	ci right 4.649995e-01	k: 18404	n:40000
KS ci ratio: 8.882856e-02	ci left: 4.435910e-02	ci right 4.850707e-02	k: 1856	n:40000
PROS1   40000 perm   8 sec   (4755 perm/sec)   p_kst 4.640000e-02   p_cons 4.601000e-01   p_joint 1.013750e-01

Outputting figure to mutsig2_images.part000000000138/PROS1.5_2091_40000_0.0464_0.4601_0.10138.png
                gene_name: PROS1
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.046 
        ci_ks_bounds_left: 0.044 
       ci_ks_bounds_right: 0.049 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.098 
    ci_joint_bounds_right: 0.10 

Current progress: 16 percent done.
PROX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.140007e-02	ci left: 7.620288e-01	ci right 7.786135e-01	k: 7704	n:10000
Cons ci ratio: 2.994177e-02	ci left: 6.219580e-01	ci right 6.409654e-01	k: 6315	n:10000
KS ci ratio: 3.489098e-02	ci left: 5.481004e-01	ci right 5.676658e-01	k: 5579	n:10000
PROX1   10000 perm   2 sec   (6264 perm/sec)   p_kst 5.579000e-01   p_cons 6.315000e-01   p_joint 7.704000e-01

Outputting figure to mutsig2_images.part000000000138/PROX1.5_2230_10000_0.5579_0.6315_0.7704.png
                gene_name: PROX1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 19 percent done.
PRR12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.875836e-02	ci left: 1.293382e-01	ci right 1.428746e-01	k: 1360	n:10000
Cons ci ratio: 1.589065e-02	ci left: 8.519224e-01	ci right 8.656679e-01	k: 8589	n:10000
KS ci ratio: 1.851468e-01	ci left: 3.891660e-02	ci right 4.695241e-02	k: 428	n:10000
PRR12   10000 perm   2 sec   (4814 perm/sec)   p_kst 4.280000e-02   p_cons 8.589000e-01   p_joint 1.360000e-01

Joint ci ratio: 7.461996e-02	ci left: 1.167073e-01	ci right 1.258032e-01	k: 2424	n:20000
Cons ci ratio: 1.117525e-02	ci left: 8.553166e-01	ci right 8.649784e-01	k: 17204	n:20000
KS ci ratio: 1.316446e-01	ci left: 3.964911e-02	ci right 4.528489e-02	k: 848	n:20000
PRR12   20000 perm   5 sec   (4379 perm/sec)   p_kst 4.240000e-02   p_cons 8.602000e-01   p_joint 1.212000e-01

Joint ci ratio: 6.508654e-02	ci left: 1.043449e-01	ci right 1.113979e-01	k: 3235	n:30000
Cons ci ratio: 8.851927e-03	ci left: 8.634426e-01	ci right 8.711528e-01	k: 26020	n:30000
KS ci ratio: 1.071591e-01	ci left: 4.040740e-02	ci right 4.501502e-02	k: 1280	n:30000
PRR12   30000 perm   7 sec   (4215 perm/sec)   p_kst 4.266667e-02   p_cons 8.673333e-01   p_joint 1.078333e-01

Joint ci ratio: 5.864479e-02	ci left: 9.752076e-02	ci right 1.034374e-01	k: 4018	n:40000
Cons ci ratio: 7.678648e-03	ci left: 8.635826e-01	ci right 8.702641e-01	k: 34678	n:40000
KS ci ratio: 9.384066e-02	ci left: 3.983513e-02	ci right 4.378174e-02	k: 1671	n:40000
PRR12   40000 perm   10 sec   (4123 perm/sec)   p_kst 4.177500e-02   p_cons 8.669500e-01   p_joint 1.004500e-01

Outputting figure to mutsig2_images.part000000000138/PRR12.5_6167_40000_0.041775_0.86695_0.10045.png
                gene_name: PRR12
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.042 
        ci_ks_bounds_left: 0.040 
       ci_ks_bounds_right: 0.044 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.098 
    ci_joint_bounds_right: 0.10 

Current progress: 21 percent done.
PRSS12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.569767e-02	ci left: 6.903061e-01	ci right 7.083777e-01	k: 6994	n:10000
KS ci ratio: 1.146199e-02	ci left: 9.158488e-01	ci right 9.265043e-01	k: 9213	n:10000
PRSS12   10000 perm   2 sec   (5635 perm/sec)   p_kst 9.213000e-01   p_cons 6.994000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000138/PRSS12.5_2680_10000_0.9213_0.6994_1.png
                gene_name: PRSS12
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 23 percent done.
PRSS23
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.023926e-01	ci left: 7.512676e-03	ci right 1.138119e-02	k: 93	n:10000
Cons ci ratio: 1.692637e-01	ci left: 4.657748e-02	ci right 5.528648e-02	k: 508	n:10000
KS ci ratio: 2.689486e-01	ci left: 1.799971e-02	ci right 2.368423e-02	k: 207	n:10000
PRSS23   10000 perm   2 sec   (6337 perm/sec)   p_kst 2.070000e-02   p_cons 5.080000e-02   p_joint 9.300000e-03

Joint ci ratio: 2.690752e-01	ci left: 9.087199e-03	ci right 1.195778e-02	k: 209	n:20000
Cons ci ratio: 1.200634e-01	ci left: 4.755432e-02	ci right 5.367717e-02	k: 1011	n:20000
KS ci ratio: 1.863283e-01	ci left: 1.963004e-02	ci right 2.371068e-02	k: 432	n:20000
PRSS23   20000 perm   3 sec   (5796 perm/sec)   p_kst 2.160000e-02   p_cons 5.055000e-02   p_joint 1.045000e-02

Joint ci ratio: 2.028049e-01	ci left: 1.105183e-02	ci right 1.357727e-02	k: 368	n:30000
Cons ci ratio: 9.765997e-02	ci left: 4.847233e-02	ci right 5.348175e-02	k: 1528	n:30000
KS ci ratio: 1.554097e-01	ci left: 1.915081e-02	ci right 2.240959e-02	k: 622	n:30000
PRSS23   30000 perm   5 sec   (5587 perm/sec)   p_kst 2.073333e-02   p_cons 5.093333e-02   p_joint 1.226667e-02

Joint ci ratio: 1.807237e-01	ci left: 1.057374e-02	ci right 1.269805e-02	k: 464	n:40000
Cons ci ratio: 8.554608e-02	ci left: 4.773746e-02	ci right 5.202819e-02	k: 1994	n:40000
KS ci ratio: 1.332575e-01	ci left: 1.976230e-02	ci right 2.260780e-02	k: 846	n:40000
PRSS23   40000 perm   7 sec   (5428 perm/sec)   p_kst 2.115000e-02   p_cons 4.985000e-02   p_joint 1.160000e-02

Joint ci ratio: 1.287575e-01	ci left: 1.702698e-02	ci right 1.938942e-02	k: 909	n:50000
Cons ci ratio: 7.609432e-02	ci left: 4.847895e-02	ci right 5.233346e-02	k: 2519	n:50000
KS ci ratio: 1.184345e-01	ci left: 2.016881e-02	ci right 2.272717e-02	k: 1071	n:50000
PRSS23   50000 perm   9 sec   (5309 perm/sec)   p_kst 2.142000e-02   p_cons 5.038000e-02   p_joint 1.818000e-02

Joint ci ratio: 1.849247e-01	ci left: 6.745713e-03	ci right 8.135903e-03	k: 445	n:60000
Cons ci ratio: 6.951283e-02	ci left: 4.858100e-02	ci right 5.209599e-02	k: 3019	n:60000
KS ci ratio: 1.102087e-01	ci left: 1.951079e-02	ci right 2.180257e-02	k: 1238	n:60000
PRSS23   60000 perm   12 sec   (5174 perm/sec)   p_kst 2.063333e-02   p_cons 5.031667e-02   p_joint 7.416667e-03

Joint ci ratio: 1.873634e-01	ci left: 5.631909e-03	ci right 6.809586e-03	k: 434	n:70000
Cons ci ratio: 6.402545e-02	ci left: 4.919886e-02	ci right 5.246707e-02	k: 3557	n:70000
KS ci ratio: 1.025235e-01	ci left: 1.940733e-02	ci right 2.151840e-02	k: 1431	n:70000
PRSS23   70000 perm   14 sec   (5076 perm/sec)   p_kst 2.044286e-02   p_cons 5.081429e-02   p_joint 6.200000e-03

Joint ci ratio: 1.690668e-01	ci left: 6.110471e-03	ci right 7.250747e-03	k: 533	n:80000
Cons ci ratio: 5.998591e-02	ci left: 4.915287e-02	ci right 5.220482e-02	k: 4053	n:80000
KS ci ratio: 9.588919e-02	ci left: 1.948041e-02	ci right 2.145458e-02	k: 1636	n:80000
PRSS23   80000 perm   16 sec   (4976 perm/sec)   p_kst 2.045000e-02   p_cons 5.066250e-02   p_joint 6.662500e-03

Joint ci ratio: 1.386761e-01	ci left: 8.189421e-03	ci right 9.420330e-03	k: 791	n:90000
Cons ci ratio: 5.654713e-02	ci left: 4.925373e-02	ci right 5.213087e-02	k: 4561	n:90000
KS ci ratio: 9.074856e-02	ci left: 1.938859e-02	ci right 2.124251e-02	k: 1827	n:90000
PRSS23   90000 perm   18 sec   (4874 perm/sec)   p_kst 2.030000e-02   p_cons 5.067778e-02   p_joint 8.788889e-03

Joint ci ratio: 1.325512e-01	ci left: 8.095014e-03	ci right 9.253755e-03	k: 866	n:100000
Cons ci ratio: 5.366145e-02	ci left: 4.929895e-02	ci right 5.202719e-02	k: 5065	n:100000
KS ci ratio: 8.683896e-02	ci left: 1.910208e-02	ci right 2.084592e-02	k: 1996	n:100000
PRSS23   100000 perm   21 sec   (4791 perm/sec)   p_kst 1.996000e-02   p_cons 5.065000e-02   p_joint 8.660000e-03

Joint ci ratio: 1.277200e-01	ci left: 7.948329e-03	ci right 9.041459e-03	k: 933	n:110000
Cons ci ratio: 5.112363e-02	ci left: 4.943780e-02	ci right 5.204050e-02	k: 5580	n:110000
KS ci ratio: 8.265771e-02	ci left: 1.920752e-02	ci right 2.087247e-02	k: 2203	n:110000
PRSS23   110000 perm   23 sec   (4710 perm/sec)   p_kst 2.002727e-02   p_cons 5.072727e-02   p_joint 8.481818e-03

Joint ci ratio: 1.220358e-01	ci left: 8.004486e-03	ci right 9.052806e-03	k: 1022	n:120000
Cons ci ratio: 4.883895e-02	ci left: 4.970431e-02	ci right 5.220079e-02	k: 6113	n:120000
KS ci ratio: 7.904427e-02	ci left: 1.928888e-02	ci right 2.088443e-02	k: 2409	n:120000
PRSS23   120000 perm   26 sec   (4644 perm/sec)   p_kst 2.007500e-02   p_cons 5.094167e-02   p_joint 8.516667e-03

Joint ci ratio: 9.568362e-02	ci left: 1.213589e-02	ci right 1.336291e-02	k: 1656	n:130000
Cons ci ratio: 4.689871e-02	ci left: 4.980267e-02	ci right 5.220202e-02	k: 6629	n:130000
KS ci ratio: 7.619435e-02	ci left: 1.919300e-02	ci right 2.072083e-02	k: 2593	n:130000
PRSS23   130000 perm   28 sec   (4564 perm/sec)   p_kst 1.994615e-02   p_cons 5.099231e-02   p_joint 1.273846e-02

Outputting figure to mutsig2_images.part000000000138/PRSS23.5_1156_130000_0.019946_0.050992_0.012738.png
                gene_name: PRSS23
               theta_stop: 0.096 
                    nperm: 130000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.021 
                   p_cons: 0.051 
      ci_cons_bounds_left: 0.050 
     ci_cons_bounds_right: 0.052 
                  p_joint: 0.013 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.013 

Current progress: 26 percent done.
PRMT10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.497861e-02	ci left: 7.022067e-01	ci right 7.200701e-01	k: 7112	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
PRMT10   10000 perm   1 sec   (6841 perm/sec)   p_kst 1   p_cons 7.112000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000138/PRMT10.4_2586_10000_1_0.7112_1.png
                gene_name: PRMT10
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 28 percent done.
PROKR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.255064e-02	ci left: 4.491963e-01	ci right 4.688276e-01	k: 4590	n:10000
Cons ci ratio: 4.057425e-02	ci left: 4.728623e-01	ci right 4.925478e-01	k: 4827	n:10000
KS ci ratio: 5.863342e-02	ci left: 2.997517e-01	ci right 3.179597e-01	k: 3088	n:10000
PROKR2   10000 perm   1 sec   (6701 perm/sec)   p_kst 3.088000e-01   p_cons 4.827000e-01   p_joint 4.590000e-01

Outputting figure to mutsig2_images.part000000000138/PROKR2.4_1162_10000_0.3088_0.4827_0.459.png
                gene_name: PROKR2
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 30 percent done.
PROM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.566287e-03	ci left: 9.502311e-01	ci right 9.585016e-01	k: 9545	n:10000
Cons ci ratio: 3.080322e-02	ci left: 6.085946e-01	ci right 6.277365e-01	k: 6182	n:10000
KS ci ratio: 1.447860e-02	ci left: 8.734700e-01	ci right 8.863078e-01	k: 8800	n:10000
PROM1   10000 perm   2 sec   (5347 perm/sec)   p_kst 8.800000e-01   p_cons 6.182000e-01   p_joint 9.545000e-01

Outputting figure to mutsig2_images.part000000000138/PROM1.4_2702_10000_0.88_0.6182_0.9545.png
                gene_name: PROM1
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 33 percent done.
PROX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.619696e-02	ci left: 5.298707e-01	ci right 5.495061e-01	k: 5397	n:10000
Cons ci ratio: 4.874877e-02	ci left: 3.830114e-01	ci right 4.022512e-01	k: 3926	n:10000
KS ci ratio: 3.455982e-02	ci left: 5.528102e-01	ci right 5.723533e-01	k: 5626	n:10000
PROX2   10000 perm   2 sec   (5909 perm/sec)   p_kst 5.626000e-01   p_cons 3.926000e-01   p_joint 5.397000e-01

Outputting figure to mutsig2_images.part000000000138/PROX2.4_1795_10000_0.5626_0.3926_0.5397.png
                gene_name: PROX2
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 35 percent done.
PROZ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.857514e-03	ci left: 9.471062e-01	ci right 9.556284e-01	k: 9515	n:10000
KS ci ratio: 9.901168e-03	ci left: 9.352693e-01	ci right 9.446723e-01	k: 9401	n:10000
PROZ   10000 perm   1 sec   (6716 perm/sec)   p_kst 9.401000e-01   p_cons 9.515000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000138/PROZ.4_1235_10000_0.9401_0.9515_1.png
                gene_name: PROZ
               theta_stop: 0.0099 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 37 percent done.
PRR16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.688161e-02	ci left: 3.127459e-01	ci right 3.311579e-01	k: 3219	n:10000
Cons ci ratio: 1.706816e-01	ci left: 4.580994e-02	ci right 5.445453e-02	k: 500	n:10000
KS ci ratio: 2.749029e-02	ci left: 6.609875e-01	ci right 6.795132e-01	k: 6703	n:10000
PRR16   10000 perm   2 sec   (6639 perm/sec)   p_kst 6.703000e-01   p_cons 5.000000e-02   p_joint 3.219000e-01

Joint ci ratio: 2.642199e-02	ci left: 5.169503e-01	ci right 5.308427e-01	k: 10478	n:20000
Cons ci ratio: 1.205662e-01	ci left: 4.716578e-02	ci right 5.326583e-02	k: 1003	n:20000
KS ci ratio: 2.024525e-02	ci left: 6.454521e-01	ci right 6.587036e-01	k: 13042	n:20000
PRR16   20000 perm   3 sec   (6023 perm/sec)   p_kst 6.521000e-01   p_cons 5.015000e-02   p_joint 5.239000e-01

Joint ci ratio: 2.270050e-02	ci left: 4.927925e-01	ci right 5.041412e-01	k: 14954	n:30000
Cons ci ratio: 9.875369e-02	ci left: 4.743057e-02	ci right 5.239039e-02	k: 1496	n:30000
KS ci ratio: 1.649642e-02	ci left: 6.476156e-01	ci right 6.584214e-01	k: 19591	n:30000
PRR16   30000 perm   5 sec   (5714 perm/sec)   p_kst 6.530333e-01   p_cons 4.986667e-02   p_joint 4.984667e-01

Outputting figure to mutsig2_images.part000000000138/PRR16.4_854_30000_0.65303_0.049867_0.49847.png
                gene_name: PRR16
               theta_stop: 0.099 
                    nperm: 30000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.050 
      ci_cons_bounds_left: 0.047 
     ci_cons_bounds_right: 0.052 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.50 

Current progress: 40 percent done.
PRR5-ARHGAP8
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside exons of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.918723e-02	ci left: 6.338206e-01	ci right 6.526959e-01	k: 6433	n:10000
KS ci ratio: 2.363374e-02	ci left: 7.246163e-01	ci right 7.420476e-01	k: 7334	n:10000
PRR5-ARHGAP8   10000 perm   1 sec   (6806 perm/sec)   p_kst 7.334000e-01   p_cons 6.433000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000138/PRR5-ARHGAP8.3_1728_10000_0.7334_0.6433_1.png
                gene_name: PRR5-ARHGAP8
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 42 percent done.
PRSS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.279696e-02	ci left: 1.754646e-01	ci right 1.907205e-01	k: 1830	n:10000
Cons ci ratio: 3.375245e-02	ci left: 5.644382e-01	ci right 5.839185e-01	k: 5742	n:10000
KS ci ratio: 8.467069e-02	ci left: 1.689744e-01	ci right 1.840145e-01	k: 1764	n:10000
PRSS1   10000 perm   1 sec   (6936 perm/sec)   p_kst 1.764000e-01   p_cons 5.742000e-01   p_joint 1.830000e-01

Outputting figure to mutsig2_images.part000000000138/PRSS1.4_764_10000_0.1764_0.5742_0.183.png
                gene_name: PRSS1
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 44 percent done.
PRMT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.455778e-01	ci left: 6.265923e-02	ci right 7.259445e-02	k: 675	n:10000
Cons ci ratio: 1.153651e-01	ci left: 9.749841e-02	ci right 1.095337e-01	k: 1034	n:10000
KS ci ratio: 1.029581e-01	ci left: 1.200443e-01	ci right 1.331741e-01	k: 1265	n:10000
PRMT3   10000 perm   2 sec   (6064 perm/sec)   p_kst 1.265000e-01   p_cons 1.034000e-01   p_joint 6.750000e-02

Joint ci ratio: 7.346958e-02	ci left: 1.200034e-01	ci right 1.292060e-01	k: 2491	n:20000
Cons ci ratio: 7.725382e-02	ci left: 1.096268e-01	ci right 1.184858e-01	k: 2280	n:20000
KS ci ratio: 7.296871e-02	ci left: 1.214797e-01	ci right 1.307293e-01	k: 2521	n:20000
PRMT3   20000 perm   4 sec   (5557 perm/sec)   p_kst 1.260500e-01   p_cons 1.140000e-01   p_joint 1.245500e-01

Outputting figure to mutsig2_images.part000000000138/PRMT3.3_1660_20000_0.12605_0.114_0.12455.png
                gene_name: PRMT3
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 47 percent done.
PRMT8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.654028e-02	ci left: 8.417290e-01	ci right 8.558672e-01	k: 8489	n:10000
KS ci ratio: 2.026603e-02	ci left: 7.809707e-01	ci right 7.970605e-01	k: 7891	n:10000
PRMT8   10000 perm   1 sec   (7121 perm/sec)   p_kst 7.891000e-01   p_cons 8.489000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000138/PRMT8.3_1225_10000_0.7891_0.8489_1.png
                gene_name: PRMT8
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 49 percent done.
PRODH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.938381e-02	ci left: 1.540423e-01	ci right 1.685555e-01	k: 1612	n:10000
Cons ci ratio: 2.996107e-02	ci left: 6.216565e-01	ci right 6.406671e-01	k: 6312	n:10000
KS ci ratio: 1.383594e-01	ci left: 6.913757e-02	ci right 7.951204e-02	k: 742	n:10000
PRODH2   10000 perm   1 sec   (7179 perm/sec)   p_kst 7.420000e-02   p_cons 6.312000e-01   p_joint 1.612000e-01

Joint ci ratio: 5.629096e-02	ci left: 1.896276e-01	ci right 2.006612e-01	k: 3902	n:20000
Cons ci ratio: 2.120943e-02	ci left: 6.239678e-01	ci right 6.373942e-01	k: 12614	n:20000
KS ci ratio: 1.005299e-01	ci left: 6.708754e-02	ci right 7.423789e-02	k: 1412	n:20000
PRODH2   20000 perm   4 sec   (5597 perm/sec)   p_kst 7.060000e-02   p_cons 6.307000e-01   p_joint 1.951000e-01

Joint ci ratio: 4.882960e-02	ci left: 1.724978e-01	ci right 1.811649e-01	k: 5304	n:30000
Cons ci ratio: 1.781559e-02	ci left: 6.118724e-01	ci right 6.229048e-01	k: 18522	n:30000
KS ci ratio: 8.127097e-02	ci left: 6.903446e-02	ci right 7.491542e-02	k: 2158	n:30000
PRODH2   30000 perm   5 sec   (5552 perm/sec)   p_kst 7.193333e-02   p_cons 6.174000e-01   p_joint 1.768000e-01

Outputting figure to mutsig2_images.part000000000138/PRODH2.3_1655_30000_0.071933_0.6174_0.1768.png
                gene_name: PRODH2
               theta_stop: 0.081 
                    nperm: 30000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.075 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 51 percent done.
PRPF19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.305957e-02	ci left: 4.433082e-01	ci right 4.629191e-01	k: 4531	n:10000
KS ci ratio: 9.759959e-03	ci left: 9.369275e-01	ci right 9.462132e-01	k: 9417	n:10000
PRPF19   10000 perm   2 sec   (6318 perm/sec)   p_kst 9.417000e-01   p_cons 4.531000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000138/PRPF19.3_1579_10000_0.9417_0.4531_1.png
                gene_name: PRPF19
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 53 percent done.
PRPH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.131249e-02	ci left: 4.638726e-01	ci right 4.835427e-01	k: 4737	n:10000
Cons ci ratio: 1.805555e-02	ci left: 8.174085e-01	ci right 8.324018e-01	k: 8250	n:10000
KS ci ratio: 6.000711e-02	ci left: 2.900365e-01	ci right 3.080807e-01	k: 2990	n:10000
PRPH   10000 perm   2 sec   (6257 perm/sec)   p_kst 2.990000e-01   p_cons 8.250000e-01   p_joint 4.737000e-01

Outputting figure to mutsig2_images.part000000000138/PRPH.3_1449_10000_0.299_0.825_0.4737.png
                gene_name: PRPH
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 56 percent done.
PRPS1L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.744677e-02	ci left: 6.616923e-01	ci right 6.802080e-01	k: 6710	n:10000
KS ci ratio: 2.330761e-02	ci left: 7.300714e-01	ci right 7.473894e-01	k: 7388	n:10000
PRPS1L1   10000 perm   1 sec   (6926 perm/sec)   p_kst 7.388000e-01   p_cons 6.710000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000138/PRPS1L1.3_961_10000_0.7388_0.671_1.png
                gene_name: PRPS1L1
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 58 percent done.
PRR11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.777008e-02	ci left: 5.086527e-01	ci right 5.283365e-01	k: 5185	n:10000
Cons ci ratio: 7.056825e-02	ci left: 2.274091e-01	ci right 2.441451e-01	k: 2357	n:10000
KS ci ratio: 1.988809e-02	ci left: 7.872564e-01	ci right 8.031712e-01	k: 7953	n:10000
PRR11   10000 perm   1 sec   (6975 perm/sec)   p_kst 7.953000e-01   p_cons 2.357000e-01   p_joint 5.185000e-01

Outputting figure to mutsig2_images.part000000000138/PRR11.3_1119_10000_0.7953_0.2357_0.5185.png
                gene_name: PRR11
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 60 percent done.
PRSS16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.229247e-01	ci left: 8.659902e-02	ci right 9.803975e-02	k: 922	n:10000
Cons ci ratio: 1.623630e-02	ci left: 8.465185e-01	ci right 8.604749e-01	k: 8536	n:10000
KS ci ratio: 1.773010e-01	ci left: 4.245560e-02	ci right 5.081107e-02	k: 465	n:10000
PRSS16   10000 perm   1 sec   (6709 perm/sec)   p_kst 4.650000e-02   p_cons 8.536000e-01   p_joint 9.220000e-02

Joint ci ratio: 8.525382e-02	ci left: 9.150982e-02	ci right 9.970819e-02	k: 1911	n:20000
Cons ci ratio: 1.099344e-02	ci left: 8.592728e-01	ci right 8.688211e-01	k: 17282	n:20000
KS ci ratio: 1.251624e-01	ci left: 4.381688e-02	ci right 4.971579e-02	k: 934	n:20000
PRSS16   20000 perm   3 sec   (6024 perm/sec)   p_kst 4.670000e-02   p_cons 8.641000e-01   p_joint 9.555000e-02

Joint ci ratio: 5.761710e-02	ci left: 1.298020e-01	ci right 1.375358e-01	k: 4009	n:30000
Cons ci ratio: 8.993688e-03	ci left: 8.596981e-01	ci right 8.674980e-01	k: 25909	n:30000
KS ci ratio: 1.003877e-01	ci left: 4.593359e-02	ci right 5.082101e-02	k: 1450	n:30000
PRSS16   30000 perm   5 sec   (5734 perm/sec)   p_kst 4.833333e-02   p_cons 8.636333e-01   p_joint 1.336333e-01

Joint ci ratio: 6.538395e-02	ci left: 7.974782e-02	ci right 8.516298e-02	k: 3297	n:40000
Cons ci ratio: 7.799677e-03	ci left: 8.598946e-01	ci right 8.666526e-01	k: 34532	n:40000
KS ci ratio: 8.683652e-02	ci left: 4.636617e-02	ci right 5.059968e-02	k: 1938	n:40000
PRSS16   40000 perm   7 sec   (5542 perm/sec)   p_kst 4.845000e-02   p_cons 8.633000e-01   p_joint 8.242500e-02

Outputting figure to mutsig2_images.part000000000138/PRSS16.3_1593_40000_0.04845_0.8633_0.082425.png
                gene_name: PRSS16
               theta_stop: 0.087 
                    nperm: 40000 
                     p_ks: 0.048 
        ci_ks_bounds_left: 0.046 
       ci_ks_bounds_right: 0.051 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.082 
     ci_joint_bounds_left: 0.080 
    ci_joint_bounds_right: 0.085 

Current progress: 63 percent done.
PRLHR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.847932e-03	ci left: 9.472103e-01	ci right 9.557242e-01	k: 9516	n:10000
Cons ci ratio: 2.165393e-02	ci left: 7.577777e-01	ci right 7.744670e-01	k: 7662	n:10000
KS ci ratio: 1.199064e-02	ci left: 9.088480e-01	ci right 9.199092e-01	k: 9145	n:10000
PRLHR   10000 perm   1 sec   (7423 perm/sec)   p_kst 9.145000e-01   p_cons 7.662000e-01   p_joint 9.516000e-01

Outputting figure to mutsig2_images.part000000000138/PRLHR.2_1117_10000_0.9145_0.7662_0.9516.png
                gene_name: PRLHR
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 65 percent done.
PRMT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.689464e-02	ci left: 3.126467e-01	ci right 3.310572e-01	k: 3218	n:10000
Cons ci ratio: 3.211664e-02	ci left: 5.886139e-01	ci right 6.079288e-01	k: 5983	n:10000
KS ci ratio: 8.038774e-02	ci left: 1.843208e-01	ci right 1.998590e-01	k: 1920	n:10000
PRMT2   10000 perm   1 sec   (7082 perm/sec)   p_kst 1.920000e-01   p_cons 5.983000e-01   p_joint 3.218000e-01

Outputting figure to mutsig2_images.part000000000138/PRMT2.2_1342_10000_0.192_0.5983_0.3218.png
                gene_name: PRMT2
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 67 percent done.
PRMT5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.140007e-02	ci left: 7.620288e-01	ci right 7.786135e-01	k: 7704	n:10000
KS ci ratio: 3.067940e-02	ci left: 6.105032e-01	ci right 6.296268e-01	k: 6201	n:10000
PRMT5   10000 perm   1 sec   (6752 perm/sec)   p_kst 6.201000e-01   p_cons 7.704000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000138/PRMT5.2_2045_10000_0.6201_0.7704_1.png
                gene_name: PRMT5
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
PRMT6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.591382e-02	ci left: 5.337760e-01	ci right 5.533986e-01	k: 5436	n:10000
KS ci ratio: 5.917331e-02	ci left: 2.958849e-01	ci right 3.140289e-01	k: 3049	n:10000
PRMT6   10000 perm   1 sec   (7145 perm/sec)   p_kst 3.049000e-01   p_cons 5.436000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000138/PRMT6.2_1132_10000_0.3049_0.5436_1.png
                gene_name: PRMT6
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
PROK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.167040e-02	ci left: 4.595787e-01	ci right 4.792392e-01	k: 4694	n:10000
KS ci ratio: 2.653156e-02	ci left: 6.765988e-01	ci right 6.948929e-01	k: 6858	n:10000
PROK1   10000 perm   1 sec   (7813 perm/sec)   p_kst 6.858000e-01   p_cons 4.694000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000138/PROK1.2_330_10000_0.6858_0.4694_1.png
                gene_name: PROK1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 74 percent done.
PROKR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.598329e-02	ci left: 2.021508e-01	ci right 2.182184e-01	k: 2101	n:10000
KS ci ratio: 1.654673e-02	ci left: 8.416271e-01	ci right 8.557691e-01	k: 8488	n:10000
PROKR1   10000 perm   1 sec   (6954 perm/sec)   p_kst 8.488000e-01   p_cons 2.101000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000138/PROKR1.2_1188_10000_0.8488_0.2101_1.png
                gene_name: PROKR1
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
PROM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.160559e-02	ci left: 7.585873e-01	ci right 7.752569e-01	k: 7670	n:10000
Cons ci ratio: 2.683977e-02	ci left: 6.715616e-01	ci right 6.899330e-01	k: 6808	n:10000
KS ci ratio: 3.268081e-02	ci left: 5.801849e-01	ci right 5.995628e-01	k: 5899	n:10000
PROM2   10000 perm   1 sec   (6667 perm/sec)   p_kst 5.899000e-01   p_cons 6.808000e-01   p_joint 7.670000e-01

Outputting figure to mutsig2_images.part000000000138/PROM2.2_2597_10000_0.5899_0.6808_0.767.png
                gene_name: PROM2
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 79 percent done.
PRPF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.963746e-02	ci left: 7.914146e-01	ci right 8.072106e-01	k: 7994	n:10000
Cons ci ratio: 5.583028e-02	ci left: 3.208839e-01	ci right 3.394152e-01	k: 3301	n:10000
KS ci ratio: 4.285168e-02	ci left: 4.457032e-01	ci right 4.653227e-01	k: 4555	n:10000
PRPF4   10000 perm   1 sec   (6911 perm/sec)   p_kst 4.555000e-01   p_cons 3.301000e-01   p_joint 7.994000e-01

Outputting figure to mutsig2_images.part000000000138/PRPF4.2_1625_10000_0.4555_0.3301_0.7994.png
                gene_name: PRPF4
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 81 percent done.
PRPF40B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.138375e-01	ci left: 9.993440e-02	ci right 1.120962e-01	k: 1059	n:10000
KS ci ratio: 8.751644e-03	ci left: 9.482515e-01	ci right 9.566824e-01	k: 9526	n:10000
PRPF40B   10000 perm   2 sec   (6060 perm/sec)   p_kst 9.526000e-01   p_cons 1.059000e-01   p_joint 1

Joint ci ratio: 2.533524e-02	ci left: 5.378673e-01	ci right 5.517197e-01	k: 10896	n:20000
Cons ci ratio: 7.928886e-02	ci left: 1.045657e-01	ci right 1.132484e-01	k: 2177	n:20000
KS ci ratio: 6.182293e-03	ci left: 9.496150e-01	ci right 9.555525e-01	k: 19053	n:20000
PRPF40B   20000 perm   4 sec   (5593 perm/sec)   p_kst 9.526500e-01   p_cons 1.088500e-01   p_joint 5.448000e-01

Outputting figure to mutsig2_images.part000000000138/PRPF40B.2_2716_20000_0.95265_0.10885_0.5448.png
                gene_name: PRPF40B
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.55 

Current progress: 84 percent done.
PRPF6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.267398e-02	ci left: 7.406834e-01	ci right 7.577712e-01	k: 7493	n:10000
KS ci ratio: 3.928043e-02	ci left: 4.890517e-01	ci right 5.087489e-01	k: 4989	n:10000
PRPF6   10000 perm   2 sec   (6372 perm/sec)   p_kst 4.989000e-01   p_cons 7.493000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000138/PRPF6.2_2910_10000_0.4989_0.7493_1.png
                gene_name: PRPF6
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
PRPS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.236713e-03	ci left: 9.721719e-01	ci right 9.783470e-01	k: 9754	n:10000
KS ci ratio: 3.767188e-02	ci left: 5.099533e-01	ci right 5.296352e-01	k: 5198	n:10000
PRPS1   10000 perm   1 sec   (7774 perm/sec)   p_kst 5.198000e-01   p_cons 9.754000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000138/PRPS1.2_985_10000_0.5198_0.9754_1.png
                gene_name: PRPS1
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
PRRG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.494822e-02	ci left: 7.027112e-01	ci right 7.205654e-01	k: 7117	n:10000
Cons ci ratio: 8.449635e-02	ci left: 1.695643e-01	ci right 1.846243e-01	k: 1770	n:10000
KS ci ratio: 6.342511e-02	ci left: 2.675518e-01	ci right 2.851786e-01	k: 2763	n:10000
PRRG1   10000 perm   1 sec   (7615 perm/sec)   p_kst 2.763000e-01   p_cons 1.770000e-01   p_joint 7.117000e-01

Outputting figure to mutsig2_images.part000000000138/PRRG1.2_751_10000_0.2763_0.177_0.7117.png
                gene_name: PRRG1
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 91 percent done.
PRRG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.055356e-02	ci left: 3.658968e-01	ci right 3.849758e-01	k: 3754	n:10000
Cons ci ratio: 8.843771e-02	ci left: 1.568896e-01	ci right 1.715066e-01	k: 1641	n:10000
KS ci ratio: 1.952724e-02	ci left: 7.932406e-01	ci right 8.089836e-01	k: 8012	n:10000
PRRG3   10000 perm   1 sec   (7235 perm/sec)   p_kst 8.012000e-01   p_cons 1.641000e-01   p_joint 3.754000e-01

Outputting figure to mutsig2_images.part000000000138/PRRG3.2_708_10000_0.8012_0.1641_0.3754.png
                gene_name: PRRG3
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.38 

Current progress: 93 percent done.
PRRT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.193266e-01	ci left: 9.155922e-02	ci right 1.032765e-01	k: 973	n:10000
Cons ci ratio: 1.304623e-01	ci left: 7.737381e-02	ci right 8.827067e-02	k: 827	n:10000
KS ci ratio: 8.754621e-02	ci left: 1.596393e-01	ci right 1.743552e-01	k: 1669	n:10000
PRRT2   10000 perm   1 sec   (7077 perm/sec)   p_kst 1.669000e-01   p_cons 8.270000e-02   p_joint 9.730000e-02

Joint ci ratio: 6.257005e-02	ci left: 1.588924e-01	ci right 1.692054e-01	k: 3280	n:20000
Cons ci ratio: 9.056383e-02	ci left: 8.175806e-02	ci right 8.956289e-02	k: 1712	n:20000
KS ci ratio: 6.206165e-02	ci left: 1.611140e-01	ci right 1.714832e-01	k: 3325	n:20000
PRRT2   20000 perm   3 sec   (6355 perm/sec)   p_kst 1.662500e-01   p_cons 8.560000e-02   p_joint 1.640000e-01

Outputting figure to mutsig2_images.part000000000138/PRRT2.2_1035_20000_0.16625_0.0856_0.164.png
                gene_name: PRRT2
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.086 
      ci_cons_bounds_left: 0.082 
     ci_cons_bounds_right: 0.090 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 95 percent done.
PRRX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.475385e-02	ci left: 7.059398e-01	ci right 7.237349e-01	k: 7149	n:10000
Cons ci ratio: 2.561827e-02	ci left: 6.916168e-01	ci right 7.096662e-01	k: 7007	n:10000
KS ci ratio: 5.902015e-02	ci left: 2.969755e-01	ci right 3.151376e-01	k: 3060	n:10000
PRRX1   10000 perm   1 sec   (6845 perm/sec)   p_kst 3.060000e-01   p_cons 7.007000e-01   p_joint 7.149000e-01

Outputting figure to mutsig2_images.part000000000138/PRRX1.2_813_10000_0.306_0.7007_0.7149.png
                gene_name: PRRX1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.72 

Current progress: 98 percent done.
PRSS22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.548344e-02	ci left: 2.043197e-01	ci right 2.204482e-01	k: 2123	n:10000
Cons ci ratio: 9.484152e-02	ci left: 1.389371e-01	ci right 1.528699e-01	k: 1458	n:10000
KS ci ratio: 2.476599e-02	ci left: 7.057380e-01	ci right 7.235368e-01	k: 7147	n:10000
PRSS22   10000 perm   1 sec   (7804 perm/sec)   p_kst 7.147000e-01   p_cons 1.458000e-01   p_joint 2.123000e-01

Outputting figure to mutsig2_images.part000000000138/PRSS22.2_978_10000_0.7147_0.1458_0.2123.png
                gene_name: PRSS22
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000138
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 138 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1704>
Subject: Job 8004455: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1704>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000139> was used as the working directory.
Started at Sun Nov 11 15:14:31 2012
Results reported at Sun Nov 11 15:29:54 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000139.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000139.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 139  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000139.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    981.00 sec.
    Max Memory :      4567 MB
    Max Swap   :      7057 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
139
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 139
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 139: processing genes 12486 - 12575
Calculating significance of each gene.
Using projection method.
12486	PRSS27	1
12487	PRSS3	2.359875e-01
12488	PRSS33	1
12489	PRSS35	3.908267e-01
12490	PRSS36	5.639763e-01
12491	PRSS37	1.137027e-01
12492	PRSS38	7.839306e-01
12493	PRSS42	1.062396e-01
12494	PRSS45	1
12495	PRSS48	1
12496	PRSS50	1
12497	PRSS53	1
12498	PRSS54	6.950018e-01
12499	PRSS55	1
12500	PRSS8	1
12501	PRSSL1	2.212898e-01
12502	PRTFDC1	6.202602e-01
12503	PRTG	4.793831e-01
12504	PRTN3	1
12505	PRUNE	1
12506	PRUNE2	9.999055e-01
12507	PRX	1
12508	PSAP	1
12509	PSAT1	2.155924e-01
12510	PSCA	1
12511	PSD	9.620963e-01
12512	PSD2	4.262350e-01
12513	PSD3	1
12514	PSD4	1
12515	PSEN1	2.209875e-01
12516	PSEN2	3.006319e-01
12517	PSENEN	3.083012e-01
12518	PSG1	1.469183e-01
12519	PSG11	1.643553e-01
12520	PSG2	1.844980e-03
12521	PSG3	4.034474e-01
12522	PSG4	5.887771e-01
12523	PSG5	6.449258e-02
12524	PSG6	6.597719e-05
12525	PSG7	2.759448e-02
12526	PSG8	3.805835e-02
12527	PSG9	1.056647e-01
12528	PSIP1	5.508529e-01
12529	PSKH1	1
12530	PSKH2	5.700914e-01
12531	PSMA1	1
12532	PSMA2	1
12533	PSMA3	1
12534	PSMA4	5.937507e-01
12535	PSMA5	6.611567e-01
12536	PSMA6	1
12537	PSMA7	1
12538	PSMA8	5.348670e-01
12539	PSMB1	1
12540	PSMB10	1
12541	PSMB11	4.618529e-01
12542	PSMB2	1
12543	PSMB3	5.974508e-01
12544	PSMB4	2.394930e-01
12545	PSMB5	1
12546	PSMB6	1
12547	PSMB7	1
12548	PSMB8	2.935222e-01
12549	PSMB9	1
12550	PSMC1	1
12551	PSMC2	1.428338e-01
12552	PSMC3	5.622030e-01
12553	PSMC3IP	1
12554	PSMC4	5.434850e-01
12555	PSMC5	1.193624e-01
12556	PSMC6	3.689330e-01
12557	PSMD1	4.440784e-01
12558	PSMD10	1
12559	PSMD11	8.236378e-01
12560	PSMD12	7.547591e-01
12561	PSMD13	7.189649e-01
12562	PSMD14	7.614359e-02
12563	PSMD2	1
12564	PSMD3	3.766218e-01
12565	PSMD4	4.978016e-01
12566	PSMD5	1
12567	PSMD6	1
12568	PSMD7	1.580068e-01
12569	PSMD8	1
12570	PSMD9	1
12571	PSME1	1
12572	PSME2	4.732588e-01
12573	PSME3	5.007660e-01
12574	PSME4	1
12575	PSMF1	4.042934e-01
Done

Running MutSig 2:
Scatter job 139: processing genes 12486 - 12575
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
PRUNE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.920980e-02	ci left: 4.899514e-01	ci right 5.096487e-01	k: 4998	n:10000
Cons ci ratio: 5.028991e-03	ci left: 9.812374e-01	ci right 9.862751e-01	k: 9839	n:10000
KS ci ratio: 6.120178e-02	ci left: 2.819111e-01	ci right 2.998108e-01	k: 2908	n:10000
PRUNE2   10000 perm   3 sec   (3235 perm/sec)   p_kst 2.908000e-01   p_cons 9.839000e-01   p_joint 4.998000e-01

Outputting figure to mutsig2_images.part000000000139/PRUNE2.17_9343_10000_0.2908_0.9839_0.4998.png
                gene_name: PRUNE2
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 2 percent done.
PSG6
Processing conservation and coverage...
Processing mutations... 
Skipping 5 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.842359e-01	ci left: 8.324320e-03	ci right 1.236857e-02	k: 102	n:10000
Cons ci ratio: 1.092784e-01	ci left: 1.077365e-01	ci right 1.202894e-01	k: 1139	n:10000
KS ci ratio: 2.437940e-01	ci left: 2.212298e-02	ci right 2.835777e-02	k: 251	n:10000
PSG6   10000 perm   2 sec   (5397 perm/sec)   p_kst 2.510000e-02   p_cons 1.139000e-01   p_joint 1.020000e-02

Joint ci ratio: 1.474078e-01	ci left: 3.162770e-02	ci right 3.670891e-02	k: 682	n:20000
Cons ci ratio: 8.051804e-02	ci left: 1.016679e-01	ci right 1.102470e-01	k: 2118	n:20000
KS ci ratio: 1.718684e-01	ci left: 2.316787e-02	ci right 2.757159e-02	k: 506	n:20000
PSG6   20000 perm   4 sec   (4895 perm/sec)   p_kst 2.530000e-02   p_cons 1.059000e-01   p_joint 3.410000e-02

Joint ci ratio: 1.143939e-01	ci left: 3.550805e-02	ci right 3.984874e-02	k: 1129	n:30000
Cons ci ratio: 6.572578e-02	ci left: 1.025053e-01	ci right 1.095045e-01	k: 3179	n:30000
KS ci ratio: 1.383377e-01	ci left: 2.426080e-02	ci right 2.789843e-02	k: 781	n:30000
PSG6   30000 perm   6 sec   (4718 perm/sec)   p_kst 2.603333e-02   p_cons 1.059667e-01   p_joint 3.763333e-02

Joint ci ratio: 1.115929e-01	ci left: 2.825267e-02	ci right 3.161603e-02	k: 1196	n:40000
Cons ci ratio: 5.360458e-02	ci left: 1.147550e-01	ci right 1.211006e-01	k: 4716	n:40000
KS ci ratio: 1.191412e-01	ci left: 2.477801e-02	ci right 2.794126e-02	k: 1053	n:40000
PSG6   40000 perm   9 sec   (4564 perm/sec)   p_kst 2.632500e-02   p_cons 1.179000e-01   p_joint 2.990000e-02

Joint ci ratio: 1.106648e-01	ci left: 2.312368e-02	ci right 2.585191e-02	k: 1223	n:50000
Cons ci ratio: 4.804832e-02	ci left: 1.146501e-01	ci right 1.203143e-01	k: 5873	n:50000
KS ci ratio: 1.067926e-01	ci left: 2.483697e-02	ci right 2.765839e-02	k: 1311	n:50000
PSG6   50000 perm   11 sec   (4451 perm/sec)   p_kst 2.622000e-02   p_cons 1.174600e-01   p_joint 2.446000e-02

Joint ci ratio: 7.746276e-02	ci left: 3.934549e-02	ci right 4.253244e-02	k: 2455	n:60000
Cons ci ratio: 4.368938e-02	ci left: 1.157095e-01	ci right 1.208942e-01	k: 7097	n:60000
KS ci ratio: 9.537504e-02	ci left: 2.607579e-02	ci right 2.870353e-02	k: 1642	n:60000
PSG6   60000 perm   14 sec   (4356 perm/sec)   p_kst 2.736667e-02   p_cons 1.182833e-01   p_joint 4.091667e-02

Outputting figure to mutsig2_images.part000000000139/PSG6.5_1371_60000_0.027367_0.11828_0.040917.png
                gene_name: PSG6
               theta_stop: 0.095 
                    nperm: 60000 
                     p_ks: 0.027 
        ci_ks_bounds_left: 0.026 
       ci_ks_bounds_right: 0.029 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.041 
     ci_joint_bounds_left: 0.039 
    ci_joint_bounds_right: 0.043 

Current progress: 5 percent done.
PSG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.064358e-01	ci left: 3.119896e-02	ci right 3.847528e-02	k: 347	n:10000
Cons ci ratio: 5.230103e-02	ci left: 3.501865e-01	ci right 3.690954e-01	k: 3596	n:10000
KS ci ratio: 7.829804e-01	ci left: 1.538312e-03	ci right 3.568919e-03	k: 24	n:10000
PSG2   10000 perm   2 sec   (5542 perm/sec)   p_kst 2.400000e-03   p_cons 3.596000e-01   p_joint 3.470000e-02

Joint ci ratio: 3.188563e-01	ci left: 6.305286e-03	ci right 8.741182e-03	k: 149	n:20000
Cons ci ratio: 3.891800e-02	ci left: 3.299506e-01	ci right 3.430970e-01	k: 6730	n:20000
KS ci ratio: 5.377261e-01	ci left: 1.942395e-03	ci right 3.408173e-03	k: 52	n:20000
PSG2   20000 perm   4 sec   (4984 perm/sec)   p_kst 2.600000e-03   p_cons 3.365000e-01   p_joint 7.450000e-03

Joint ci ratio: 1.998109e-01	ci left: 1.140021e-02	ci right 1.396212e-02	k: 379	n:30000
Cons ci ratio: 3.161227e-02	ci left: 3.334765e-01	ci right 3.442214e-01	k: 10165	n:30000
KS ci ratio: 4.125772e-01	ci left: 2.383134e-03	ci right 3.649489e-03	k: 89	n:30000
PSG2   30000 perm   6 sec   (4776 perm/sec)   p_kst 2.966667e-03   p_cons 3.388333e-01   p_joint 1.263333e-02

Joint ci ratio: 2.104389e-01	ci left: 7.694740e-03	ci right 9.527670e-03	k: 343	n:40000
Cons ci ratio: 2.619445e-02	ci left: 3.541971e-01	ci right 3.636234e-01	k: 14356	n:40000
KS ci ratio: 3.368059e-01	ci left: 2.807559e-03	ci right 3.966389e-03	k: 134	n:40000
PSG2   40000 perm   9 sec   (4634 perm/sec)   p_kst 3.350000e-03   p_cons 3.589000e-01   p_joint 8.575000e-03

Joint ci ratio: 2.180875e-01	ci left: 5.719809e-03	ci right 7.138410e-03	k: 320	n:50000
Cons ci ratio: 2.339368e-02	ci left: 3.553920e-01	ci right 3.638243e-01	k: 17980	n:50000
KS ci ratio: 3.055951e-01	ci left: 2.779382e-03	ci right 3.799634e-03	k: 163	n:50000
PSG2   50000 perm   11 sec   (4520 perm/sec)   p_kst 3.260000e-03   p_cons 3.596000e-01   p_joint 6.400000e-03

Joint ci ratio: 2.089191e-01	ci left: 5.223861e-03	ci right 6.458008e-03	k: 349	n:60000
Cons ci ratio: 2.140588e-02	ci left: 3.546780e-01	ci right 3.623690e-01	k: 21511	n:60000
KS ci ratio: 2.781199e-01	ci left: 2.841433e-03	ci right 3.774300e-03	k: 197	n:60000
PSG2   60000 perm   14 sec   (4419 perm/sec)   p_kst 3.283333e-03   p_cons 3.585167e-01   p_joint 5.816667e-03

Joint ci ratio: 1.604272e-01	ci left: 7.778350e-03	ci right 9.148578e-03	k: 591	n:70000
Cons ci ratio: 1.976844e-02	ci left: 3.561150e-01	ci right 3.632394e-01	k: 25177	n:70000
KS ci ratio: 2.620823e-01	ci left: 2.768476e-03	ci right 3.616391e-03	k: 222	n:70000
PSG2   70000 perm   16 sec   (4333 perm/sec)   p_kst 3.171429e-03   p_cons 3.596714e-01   p_joint 8.442857e-03

Joint ci ratio: 1.546955e-01	ci left: 7.346252e-03	ci right 8.589828e-03	k: 636	n:80000
Cons ci ratio: 1.849763e-02	ci left: 3.561987e-01	ci right 3.628615e-01	k: 28762	n:80000
KS ci ratio: 2.475333e-01	ci left: 2.738372e-03	ci right 3.523346e-03	k: 249	n:80000
PSG2   80000 perm   19 sec   (4254 perm/sec)   p_kst 3.112500e-03   p_cons 3.595250e-01   p_joint 7.950000e-03

Joint ci ratio: 1.537949e-01	ci left: 6.615265e-03	ci right 7.727966e-03	k: 644	n:90000
Cons ci ratio: 1.821385e-02	ci left: 3.366831e-01	ci right 3.428828e-01	k: 30580	n:90000
KS ci ratio: 2.302164e-01	ci left: 2.841554e-03	ci right 3.591032e-03	k: 288	n:90000
PSG2   90000 perm   22 sec   (4170 perm/sec)   p_kst 3.200000e-03   p_cons 3.397778e-01   p_joint 7.155556e-03

Joint ci ratio: 1.581002e-01	ci left: 5.626773e-03	ci right 6.602207e-03	k: 610	n:100000
Cons ci ratio: 1.725682e-02	ci left: 3.374229e-01	ci right 3.433064e-01	k: 34036	n:100000
KS ci ratio: 2.212234e-01	ci left: 2.783823e-03	ci right 3.485487e-03	k: 312	n:100000
PSG2   100000 perm   24 sec   (4103 perm/sec)   p_kst 3.120000e-03   p_cons 3.403600e-01   p_joint 6.100000e-03

Joint ci ratio: 1.531809e-01	ci left: 5.464688e-03	ci right 6.379839e-03	k: 650	n:110000
Cons ci ratio: 1.645163e-02	ci left: 3.376177e-01	ci right 3.432271e-01	k: 37446	n:110000
KS ci ratio: 2.101035e-01	ci left: 2.823159e-03	ci right 3.494369e-03	k: 346	n:110000
PSG2   110000 perm   27 sec   (4036 perm/sec)   p_kst 3.145455e-03   p_cons 3.404182e-01   p_joint 5.909091e-03

Joint ci ratio: 1.560145e-01	ci left: 4.824919e-03	ci right 5.649269e-03	k: 627	n:120000
Cons ci ratio: 1.574898e-02	ci left: 3.378019e-01	ci right 3.431725e-01	k: 40858	n:120000
KS ci ratio: 2.018408e-01	ci left: 2.817100e-03	ci right 3.457284e-03	k: 375	n:120000
PSG2   120000 perm   30 sec   (3971 perm/sec)   p_kst 3.125000e-03   p_cons 3.404833e-01   p_joint 5.225000e-03

Joint ci ratio: 1.521974e-01	ci left: 4.690408e-03	ci right 5.470381e-03	k: 659	n:130000
Cons ci ratio: 1.513759e-02	ci left: 3.377164e-01	ci right 3.428753e-01	k: 44238	n:130000
KS ci ratio: 1.942416e-01	ci left: 2.819730e-03	ci right 3.433534e-03	k: 405	n:130000
PSG2   130000 perm   33 sec   (3909 perm/sec)   p_kst 3.115385e-03   p_cons 3.402923e-01   p_joint 5.069231e-03

Joint ci ratio: 1.277685e-01	ci left: 6.251678e-03	ci right 7.111803e-03	k: 934	n:140000
Cons ci ratio: 1.457975e-02	ci left: 3.380317e-01	ci right 3.430034e-01	k: 47672	n:140000
KS ci ratio: 1.870110e-01	ci left: 2.835989e-03	ci right 3.427744e-03	k: 437	n:140000
PSG2   140000 perm   36 sec   (3851 perm/sec)   p_kst 3.121429e-03   p_cons 3.405143e-01   p_joint 6.671429e-03

Joint ci ratio: 1.155559e-01	ci left: 7.173187e-03	ci right 8.059338e-03	k: 1141	n:150000
Cons ci ratio: 1.409086e-02	ci left: 3.379419e-01	ci right 3.427442e-01	k: 51051	n:150000
KS ci ratio: 1.784492e-01	ci left: 2.920494e-03	ci right 3.498973e-03	k: 480	n:150000
PSG2   150000 perm   40 sec   (3792 perm/sec)   p_kst 3.200000e-03   p_cons 3.403400e-01   p_joint 7.606667e-03

Joint ci ratio: 1.087431e-01	ci left: 7.617952e-03	ci right 8.500014e-03	k: 1288	n:160000
Cons ci ratio: 1.364541e-02	ci left: 3.379532e-01	ci right 3.426026e-01	k: 54444	n:160000
KS ci ratio: 1.736450e-01	ci left: 2.899275e-03	ci right 3.456469e-03	k: 507	n:160000
PSG2   160000 perm   43 sec   (3736 perm/sec)   p_kst 3.168750e-03   p_cons 3.402750e-01   p_joint 8.050000e-03

Joint ci ratio: 1.059875e-01	ci left: 7.559083e-03	ci right 8.410765e-03	k: 1356	n:170000
Cons ci ratio: 1.324924e-02	ci left: 3.376423e-01	ci right 3.421514e-01	k: 57782	n:170000
KS ci ratio: 1.698471e-01	ci left: 2.858203e-03	ci right 3.394258e-03	k: 530	n:170000
PSG2   170000 perm   46 sec   (3684 perm/sec)   p_kst 3.117647e-03   p_cons 3.398941e-01   p_joint 7.976471e-03

Joint ci ratio: 8.959792e-02	ci left: 1.005053e-02	ci right 1.099867e-02	k: 1893	n:180000
Cons ci ratio: 1.287132e-02	ci left: 3.378669e-01	ci right 3.422494e-01	k: 61210	n:180000
KS ci ratio: 1.658381e-01	ci left: 2.837788e-03	ci right 3.356198e-03	k: 556	n:180000
PSG2   180000 perm   50 sec   (3635 perm/sec)   p_kst 3.088889e-03   p_cons 3.400556e-01   p_joint 1.051667e-02

Joint ci ratio: 8.903138e-02	ci left: 9.650106e-03	ci right 1.055441e-02	k: 1918	n:190000
Cons ci ratio: 1.252386e-02	ci left: 3.380748e-01	ci right 3.423406e-01	k: 64639	n:190000
KS ci ratio: 1.604521e-01	ci left: 2.880272e-03	ci right 3.387707e-03	k: 594	n:190000
PSG2   190000 perm   53 sec   (3588 perm/sec)   p_kst 3.126316e-03   p_cons 3.402053e-01   p_joint 1.009474e-02

Joint ci ratio: 9.236749e-02	ci left: 8.512561e-03	ci right 9.341767e-03	k: 1784	n:200000
Cons ci ratio: 1.220282e-02	ci left: 3.382732e-01	ci right 3.424314e-01	k: 68070	n:200000
KS ci ratio: 1.542204e-01	ci left: 2.971626e-03	ci right 3.472944e-03	k: 643	n:200000
PSG2   200000 perm   56 sec   (3543 perm/sec)   p_kst 3.215000e-03   p_cons 3.403500e-01   p_joint 8.920000e-03

Joint ci ratio: 9.307341e-02	ci left: 7.986161e-03	ci right 8.770357e-03	k: 1758	n:210000
Cons ci ratio: 1.191689e-02	ci left: 3.380166e-01	ci right 3.420735e-01	k: 71409	n:210000
KS ci ratio: 1.508622e-01	ci left: 2.962943e-03	ci right 3.450929e-03	k: 672	n:210000
PSG2   210000 perm   60 sec   (3495 perm/sec)   p_kst 3.200000e-03   p_cons 3.400429e-01   p_joint 8.371429e-03

Joint ci ratio: 9.188774e-02	ci left: 7.827379e-03	ci right 8.585664e-03	k: 1804	n:220000
Cons ci ratio: 1.164213e-02	ci left: 3.380930e-01	ci right 3.420567e-01	k: 74816	n:220000
KS ci ratio: 1.479258e-01	ci left: 2.946402e-03	ci right 3.421383e-03	k: 699	n:220000
PSG2   220000 perm   64 sec   (3450 perm/sec)   p_kst 3.177273e-03   p_cons 3.400727e-01   p_joint 8.200000e-03

Joint ci ratio: 9.028001e-02	ci left: 7.763218e-03	ci right 8.501433e-03	k: 1869	n:230000
Cons ci ratio: 1.138720e-02	ci left: 3.380986e-01	ci right 3.419750e-01	k: 78208	n:230000
KS ci ratio: 1.439674e-01	ci left: 2.981675e-03	ci right 3.448375e-03	k: 738	n:230000
PSG2   230000 perm   68 sec   (3407 perm/sec)   p_kst 3.208696e-03   p_cons 3.400348e-01   p_joint 8.126087e-03

Joint ci ratio: 9.039292e-02	ci left: 7.423401e-03	ci right 8.130231e-03	k: 1865	n:240000
Cons ci ratio: 1.114407e-02	ci left: 3.382753e-01	ci right 3.420703e-01	k: 81641	n:240000
KS ci ratio: 1.419677e-01	ci left: 2.941804e-03	ci right 3.395326e-03	k: 759	n:240000
PSG2   240000 perm   71 sec   (3363 perm/sec)   p_kst 3.162500e-03   p_cons 3.401708e-01   p_joint 7.770833e-03

Joint ci ratio: 8.858385e-02	ci left: 7.427573e-03	ci right 8.119912e-03	k: 1942	n:250000
Cons ci ratio: 1.092882e-02	ci left: 3.379073e-01	ci right 3.416244e-01	k: 84941	n:250000
KS ci ratio: 1.392465e-01	ci left: 2.939910e-03	ci right 3.383732e-03	k: 789	n:250000
PSG2   250000 perm   75 sec   (3324 perm/sec)   p_kst 3.156000e-03   p_cons 3.397640e-01   p_joint 7.768000e-03

Joint ci ratio: 8.855129e-02	ci left: 7.149373e-03	ci right 7.815522e-03	k: 1944	n:260000
Cons ci ratio: 1.071775e-02	ci left: 3.378948e-01	ci right 3.415396e-01	k: 88326	n:260000
KS ci ratio: 1.359297e-01	ci left: 2.971677e-03	ci right 3.408744e-03	k: 828	n:260000
PSG2   260000 perm   79 sec   (3285 perm/sec)   p_kst 3.184615e-03   p_cons 3.397154e-01   p_joint 7.476923e-03

Joint ci ratio: 8.697863e-02	ci left: 7.141772e-03	ci right 7.794793e-03	k: 2015	n:270000
Cons ci ratio: 1.051464e-02	ci left: 3.380466e-01	ci right 3.416235e-01	k: 91755	n:270000
KS ci ratio: 1.329930e-01	ci left: 2.994045e-03	ci right 3.424136e-03	k: 865	n:270000
PSG2   270000 perm   83 sec   (3247 perm/sec)   p_kst 3.203704e-03   p_cons 3.398333e-01   p_joint 7.462963e-03

Joint ci ratio: 8.604947e-02	ci left: 7.040435e-03	ci right 7.676968e-03	k: 2059	n:280000
Cons ci ratio: 1.032857e-02	ci left: 3.379314e-01	ci right 3.414434e-01	k: 95112	n:280000
KS ci ratio: 1.311156e-01	ci left: 2.973449e-03	ci right 3.394082e-03	k: 890	n:280000
PSG2   280000 perm   87 sec   (3206 perm/sec)   p_kst 3.178571e-03   p_cons 3.396857e-01   p_joint 7.353571e-03

Joint ci ratio: 8.614475e-02	ci left: 6.784127e-03	ci right 7.398199e-03	k: 2055	n:290000
Cons ci ratio: 1.014690e-02	ci left: 3.380519e-01	ci right 3.415030e-01	k: 98535	n:290000
KS ci ratio: 1.291036e-01	ci left: 2.964324e-03	ci right 3.376738e-03	k: 918	n:290000
PSG2   290000 perm   92 sec   (3166 perm/sec)   p_kst 3.165517e-03   p_cons 3.397759e-01   p_joint 7.086207e-03

Joint ci ratio: 8.621836e-02	ci left: 6.548171e-03	ci right 7.141416e-03	k: 2052	n:300000
Cons ci ratio: 9.984491e-03	ci left: 3.377155e-01	ci right 3.411076e-01	k: 101823	n:300000
KS ci ratio: 1.266460e-01	ci left: 2.981676e-03	ci right 3.388015e-03	k: 954	n:300000
PSG2   300000 perm   96 sec   (3128 perm/sec)   p_kst 3.180000e-03   p_cons 3.394100e-01   p_joint 6.840000e-03

Joint ci ratio: 8.518980e-02	ci left: 6.494765e-03	ci right 7.075803e-03	k: 2102	n:310000
Cons ci ratio: 9.822210e-03	ci left: 3.377395e-01	ci right 3.410764e-01	k: 105216	n:310000
KS ci ratio: 1.249576e-01	ci left: 2.966723e-03	ci right 3.365235e-03	k: 980	n:310000
PSG2   310000 perm   100 sec   (3090 perm/sec)   p_kst 3.161290e-03   p_cons 3.394065e-01   p_joint 6.780645e-03

Joint ci ratio: 8.404011e-02	ci left: 6.469215e-03	ci right 7.039773e-03	k: 2160	n:320000
Cons ci ratio: 9.668066e-03	ci left: 3.377406e-01	ci right 3.410248e-01	k: 108602	n:320000
KS ci ratio: 1.229680e-01	ci left: 2.970913e-03	ci right 3.363170e-03	k: 1012	n:320000
PSG2   320000 perm   105 sec   (3055 perm/sec)   p_kst 3.162500e-03   p_cons 3.393813e-01   p_joint 6.750000e-03

Joint ci ratio: 7.633757e-02	ci left: 7.624543e-03	ci right 8.232631e-03	k: 2615	n:330000
Cons ci ratio: 9.522760e-03	ci left: 3.376572e-01	ci right 3.408910e-01	k: 111960	n:330000
KS ci ratio: 1.209545e-01	ci left: 2.980773e-03	ci right 3.367427e-03	k: 1046	n:330000
PSG2   330000 perm   109 sec   (3019 perm/sec)   p_kst 3.169697e-03   p_cons 3.392727e-01   p_joint 7.924242e-03

Joint ci ratio: 7.518230e-02	ci left: 7.634015e-03	ci right 8.233241e-03	k: 2696	n:340000
Cons ci ratio: 9.378767e-03	ci left: 3.378201e-01	ci right 3.410062e-01	k: 115400	n:340000
KS ci ratio: 1.191474e-01	ci left: 2.984395e-03	ci right 3.365327e-03	k: 1078	n:340000
PSG2   340000 perm   114 sec   (2984 perm/sec)   p_kst 3.170588e-03   p_cons 3.394118e-01   p_joint 7.929412e-03

Joint ci ratio: 7.426681e-02	ci left: 7.603747e-03	ci right 8.193016e-03	k: 2763	n:350000
Cons ci ratio: 9.239937e-03	ci left: 3.380310e-01	ci right 3.411717e-01	k: 118860	n:350000
KS ci ratio: 1.174189e-01	ci left: 2.987850e-03	ci right 3.363307e-03	k: 1110	n:350000
PSG2   350000 perm   119 sec   (2950 perm/sec)   p_kst 3.171429e-03   p_cons 3.396000e-01   p_joint 7.894286e-03

Joint ci ratio: 7.407275e-02	ci left: 7.433401e-03	ci right 8.007898e-03	k: 2778	n:360000
Cons ci ratio: 9.113298e-03	ci left: 3.379253e-01	ci right 3.410217e-01	k: 122210	n:360000
KS ci ratio: 1.153090e-01	ci left: 3.015431e-03	ci right 3.387082e-03	k: 1151	n:360000
PSG2   360000 perm   123 sec   (2915 perm/sec)   p_kst 3.197222e-03   p_cons 3.394722e-01   p_joint 7.716667e-03

Joint ci ratio: 7.313196e-02	ci left: 7.423510e-03	ci right 7.989646e-03	k: 2850	n:370000
Cons ci ratio: 8.988746e-03	ci left: 3.379741e-01	ci right 3.410284e-01	k: 125615	n:370000
KS ci ratio: 1.136439e-01	ci left: 3.023194e-03	ci right 3.390060e-03	k: 1185	n:370000
PSG2   370000 perm   128 sec   (2883 perm/sec)   p_kst 3.202703e-03   p_cons 3.395000e-01   p_joint 7.702703e-03

Joint ci ratio: 7.379423e-02	ci left: 7.098949e-03	ci right 7.645445e-03	k: 2800	n:380000
Cons ci ratio: 8.870103e-03	ci left: 3.379733e-01	ci right 3.409871e-01	k: 129002	n:380000
KS ci ratio: 1.121411e-01	ci left: 3.025469e-03	ci right 3.387435e-03	k: 1217	n:380000
PSG2   380000 perm   133 sec   (2848 perm/sec)   p_kst 3.202632e-03   p_cons 3.394789e-01   p_joint 7.368421e-03

Joint ci ratio: 7.647283e-02	ci left: 6.436295e-03	ci right 6.950562e-03	k: 2609	n:390000
Cons ci ratio: 8.373839e-03	ci left: 3.582448e-01	ci right 3.612598e-01	k: 140303	n:390000
KS ci ratio: 1.102548e-01	ci left: 3.052592e-03	ci right 3.411262e-03	k: 1259	n:390000
PSG2   390000 perm   138 sec   (2817 perm/sec)   p_kst 3.228205e-03   p_cons 3.597513e-01   p_joint 6.689744e-03

Joint ci ratio: 7.127617e-02	ci left: 7.237407e-03	ci right 7.774764e-03	k: 3001	n:400000
Cons ci ratio: 8.268124e-03	ci left: 3.582850e-01	ci right 3.612621e-01	k: 143909	n:400000
KS ci ratio: 1.087543e-01	ci left: 3.061382e-03	ci right 3.415875e-03	k: 1294	n:400000
PSG2   400000 perm   144 sec   (2787 perm/sec)   p_kst 3.235000e-03   p_cons 3.597725e-01   p_joint 7.502500e-03

Joint ci ratio: 6.743980e-02	ci left: 7.897439e-03	ci right 8.451009e-03	k: 3350	n:410000
Cons ci ratio: 8.164628e-03	ci left: 3.584184e-01	ci right 3.613592e-01	k: 147554	n:410000
KS ci ratio: 1.069510e-01	ci left: 3.091138e-03	ci right 3.442769e-03	k: 1338	n:410000
PSG2   410000 perm   149 sec   (2759 perm/sec)   p_kst 3.263415e-03   p_cons 3.598878e-01   p_joint 8.170732e-03

Joint ci ratio: 6.689522e-02	ci left: 7.838150e-03	ci right 8.382955e-03	k: 3405	n:420000
Cons ci ratio: 8.067340e-03	ci left: 3.584078e-01	ci right 3.613132e-01	k: 151141	n:420000
KS ci ratio: 1.057343e-01	ci left: 3.089386e-03	ci right 3.436570e-03	k: 1369	n:420000
PSG2   420000 perm   154 sec   (2731 perm/sec)   p_kst 3.259524e-03   p_cons 3.598595e-01   p_joint 8.107143e-03

Joint ci ratio: 6.914699e-02	ci left: 7.161997e-03	ci right 7.677232e-03	k: 3189	n:430000
Cons ci ratio: 7.971800e-03	ci left: 3.584931e-01	ci right 3.613646e-01	k: 154769	n:430000
KS ci ratio: 1.045207e-01	ci left: 3.090002e-03	ci right 3.433025e-03	k: 1401	n:430000
PSG2   430000 perm   159 sec   (2702 perm/sec)   p_kst 3.258140e-03   p_cons 3.599279e-01   p_joint 7.416279e-03

Joint ci ratio: 6.845382e-02	ci left: 7.144408e-03	ci right 7.653021e-03	k: 3254	n:440000
Cons ci ratio: 7.878954e-03	ci left: 3.586110e-01	ci right 3.614499e-01	k: 158413	n:440000
KS ci ratio: 1.036020e-01	ci left: 3.075113e-03	ci right 3.413299e-03	k: 1426	n:440000
PSG2   440000 perm   165 sec   (2674 perm/sec)   p_kst 3.240909e-03   p_cons 3.600295e-01   p_joint 7.395455e-03

Joint ci ratio: 6.844890e-02	ci left: 6.987808e-03	ci right 7.485235e-03	k: 3255	n:450000
Cons ci ratio: 7.792470e-03	ci left: 3.585352e-01	ci right 3.613422e-01	k: 161972	n:450000
KS ci ratio: 1.020047e-01	ci left: 3.104208e-03	ci right 3.440016e-03	k: 1471	n:450000
PSG2   450000 perm   170 sec   (2648 perm/sec)   p_kst 3.268889e-03   p_cons 3.599378e-01   p_joint 7.233333e-03

Joint ci ratio: 6.779685e-02	ci left: 6.970521e-03	ci right 7.461804e-03	k: 3318	n:460000
Cons ci ratio: 7.704956e-03	ci left: 3.586909e-01	ci right 3.614674e-01	k: 165636	n:460000
KS ci ratio: 1.010149e-01	ci left: 3.098168e-03	ci right 3.429877e-03	k: 1500	n:460000
PSG2   460000 perm   176 sec   (2620 perm/sec)   p_kst 3.260870e-03   p_cons 3.600783e-01   p_joint 7.213043e-03

Joint ci ratio: 6.779181e-02	ci left: 6.824286e-03	ci right 7.305225e-03	k: 3319	n:470000
Cons ci ratio: 7.622013e-03	ci left: 3.587381e-01	ci right 3.614849e-01	k: 169252	n:470000
KS ci ratio: 9.560992e-02	ci left: 3.393390e-03	ci right 3.736179e-03	k: 1674	n:470000
PSG2   470000 perm   181 sec   (2594 perm/sec)   p_kst 3.561702e-03   p_cons 3.601106e-01   p_joint 7.061702e-03

Outputting figure to mutsig2_images.part000000000139/PSG2.7_1028_470000_0.0035617_0.36011_0.0070617.png
                gene_name: PSG2
               theta_stop: 0.096 
                    nperm: 470000 
                     p_ks: 0.0036 
        ci_ks_bounds_left: 0.0034 
       ci_ks_bounds_right: 0.0037 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.0071 
     ci_joint_bounds_left: 0.0068 
    ci_joint_bounds_right: 0.0073 

Current progress: 7 percent done.
PSME4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.179233e-01	ci left: 9.360310e-02	ci right 1.054314e-01	k: 994	n:10000
Cons ci ratio: 9.602481e-04	ci left: 9.988336e-01	ci right 9.998376e-01	k: 9995	n:10000
KS ci ratio: 2.322340e-01	ci left: 2.447729e-02	ci right 3.100172e-02	k: 276	n:10000
PSME4   10000 perm   2 sec   (4315 perm/sec)   p_kst 2.760000e-02   p_cons 9.995000e-01   p_joint 9.940000e-02

Joint ci ratio: 1.059567e-01	ci left: 6.064653e-02	ci right 6.748089e-02	k: 1280	n:20000
Cons ci ratio: 5.544133e-04	ci left: 9.992790e-01	ci right 9.998593e-01	k: 19993	n:20000
KS ci ratio: 1.654508e-01	ci left: 2.503753e-02	ci right 2.960129e-02	k: 545	n:20000
PSME4   20000 perm   5 sec   (3912 perm/sec)   p_kst 2.725000e-02   p_cons 9.996500e-01   p_joint 6.400000e-02

Joint ci ratio: 9.810019e-02	ci left: 4.804908e-02	ci right 5.303842e-02	k: 1515	n:30000
Cons ci ratio: 5.388603e-04	ci left: 9.991340e-01	ci right 9.996951e-01	k: 29984	n:30000
KS ci ratio: 1.351760e-01	ci left: 2.542076e-02	ci right 2.913821e-02	k: 817	n:30000
PSME4   30000 perm   8 sec   (3759 perm/sec)   p_kst 2.723333e-02   p_cons 9.994667e-01   p_joint 5.050000e-02

Joint ci ratio: 8.422143e-02	ci left: 4.920721e-02	ci right 5.355821e-02	k: 2054	n:40000
Cons ci ratio: 4.700973e-04	ci left: 9.991674e-01	ci right 9.996553e-01	k: 39978	n:40000
KS ci ratio: 1.117856e-01	ci left: 2.815539e-02	ci right 3.151333e-02	k: 1192	n:40000
PSME4   40000 perm   11 sec   (3646 perm/sec)   p_kst 2.980000e-02   p_cons 9.994500e-01   p_joint 5.135000e-02

Joint ci ratio: 7.367800e-02	ci left: 5.160250e-02	ci right 5.556953e-02	k: 2678	n:50000
Cons ci ratio: 3.920784e-04	ci left: 9.992859e-01	ci right 9.996924e-01	k: 49976	n:50000
KS ci ratio: 9.897129e-02	ci left: 2.891245e-02	ci right 3.194239e-02	k: 1520	n:50000
PSME4   50000 perm   14 sec   (3575 perm/sec)   p_kst 3.040000e-02   p_cons 9.995200e-01   p_joint 5.356000e-02

Outputting figure to mutsig2_images.part000000000139/PSME4.7_5716_50000_0.0304_0.99952_0.05356.png
                gene_name: PSME4
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.030 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.054 
     ci_joint_bounds_left: 0.052 
    ci_joint_bounds_right: 0.056 

Current progress: 10 percent done.
PRTG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.015439e-02	ci left: 6.186415e-01	ci right 6.376837e-01	k: 6282	n:10000
Cons ci ratio: 7.746257e-03	ci left: 9.585892e-01	ci right 9.661384e-01	k: 9625	n:10000
KS ci ratio: 4.864673e-02	ci left: 3.840068e-01	ci right 4.032552e-01	k: 3936	n:10000
PRTG   10000 perm   2 sec   (5281 perm/sec)   p_kst 3.936000e-01   p_cons 9.625000e-01   p_joint 6.282000e-01

Outputting figure to mutsig2_images.part000000000139/PRTG.5_3533_10000_0.3936_0.9625_0.6282.png
                gene_name: PRTG
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 12 percent done.
PSG7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.166900e-01	ci left: 9.545302e-02	ci right 1.073803e-01	k: 1013	n:10000
Cons ci ratio: 3.618281e-01	ci left: 9.503508e-03	ci right 1.378807e-02	k: 115	n:10000
KS ci ratio: 4.027488e-02	ci left: 4.765590e-01	ci right 4.962490e-01	k: 4864	n:10000
PSG7   10000 perm   2 sec   (5608 perm/sec)   p_kst 4.864000e-01   p_cons 1.150000e-02   p_joint 1.013000e-01

Joint ci ratio: 8.070988e-02	ci left: 1.012260e-01	ci right 1.097891e-01	k: 2109	n:20000
Cons ci ratio: 2.504519e-01	ci left: 1.058411e-02	ci right 1.366018e-02	k: 241	n:20000
KS ci ratio: 2.848941e-02	ci left: 4.793005e-01	ci right 4.932035e-01	k: 9725	n:20000
PSG7   20000 perm   4 sec   (5038 perm/sec)   p_kst 4.862500e-01   p_cons 1.205000e-02   p_joint 1.054500e-01

Joint ci ratio: 7.389054e-02	ci left: 8.258879e-02	ci right 8.895836e-02	k: 2572	n:30000
Cons ci ratio: 2.044948e-01	ci left: 1.086192e-02	ci right 1.336723e-02	k: 362	n:30000
KS ci ratio: 2.365908e-02	ci left: 4.721334e-01	ci right 4.834709e-01	k: 14334	n:30000
PSG7   30000 perm   6 sec   (4844 perm/sec)   p_kst 4.778000e-01   p_cons 1.206667e-02   p_joint 8.573333e-02

Joint ci ratio: 7.547585e-02	ci left: 6.078564e-02	ci right 6.557801e-02	k: 2526	n:40000
Cons ci ratio: 1.801367e-01	ci left: 1.064539e-02	ci right 1.277639e-02	k: 467	n:40000
KS ci ratio: 2.051634e-02	ci left: 4.722445e-01	ci right 4.820588e-01	k: 19086	n:40000
PSG7   40000 perm   9 sec   (4704 perm/sec)   p_kst 4.771500e-01   p_cons 1.167500e-02   p_joint 6.315000e-02

Joint ci ratio: 7.620585e-02	ci left: 4.834148e-02	ci right 5.219095e-02	k: 2512	n:50000
Cons ci ratio: 1.609804e-01	ci left: 1.077589e-02	ci right 1.268143e-02	k: 585	n:50000
KS ci ratio: 1.831782e-02	ci left: 4.736530e-01	ci right 4.824296e-01	k: 23902	n:50000
PSG7   50000 perm   11 sec   (4598 perm/sec)   p_kst 4.780400e-01   p_cons 1.170000e-02   p_joint 5.024000e-02

Joint ci ratio: 7.368008e-02	ci left: 4.338771e-02	ci right 4.672314e-02	k: 2702	n:60000
Cons ci ratio: 1.453116e-01	ci left: 1.111195e-02	ci right 1.286906e-02	k: 718	n:60000
KS ci ratio: 1.671653e-02	ci left: 4.741958e-01	ci right 4.822063e-01	k: 28692	n:60000
PSG7   60000 perm   13 sec   (4502 perm/sec)   p_kst 4.782000e-01   p_cons 1.196667e-02   p_joint 4.503333e-02

Joint ci ratio: 6.643074e-02	ci left: 4.580938e-02	ci right 4.897113e-02	k: 3316	n:70000
Cons ci ratio: 1.337148e-01	ci left: 1.131701e-02	ci right 1.295237e-02	k: 848	n:70000
KS ci ratio: 1.549252e-02	ci left: 4.739793e-01	ci right 4.813940e-01	k: 33438	n:70000
PSG7   70000 perm   16 sec   (4418 perm/sec)   p_kst 4.776857e-01   p_cons 1.211429e-02   p_joint 4.737143e-02

Joint ci ratio: 6.566205e-02	ci left: 4.124783e-02	ci right 4.406046e-02	k: 3411	n:80000
Cons ci ratio: 1.266259e-01	ci left: 1.108743e-02	ci right 1.259829e-02	k: 946	n:80000
KS ci ratio: 1.450680e-02	ci left: 4.737085e-01	ci right 4.806432e-01	k: 38174	n:80000
PSG7   80000 perm   18 sec   (4339 perm/sec)   p_kst 4.771750e-01   p_cons 1.182500e-02   p_joint 4.263750e-02

Joint ci ratio: 6.240519e-02	ci left: 4.068779e-02	ci right 4.331961e-02	k: 3779	n:90000
Cons ci ratio: 1.193487e-01	ci left: 1.113707e-02	ci right 1.256132e-02	k: 1065	n:90000
KS ci ratio: 1.368472e-02	ci left: 4.736321e-01	ci right 4.801694e-01	k: 42921	n:90000
PSG7   90000 perm   21 sec   (4261 perm/sec)   p_kst 4.769000e-01   p_cons 1.183333e-02   p_joint 4.198889e-02

Joint ci ratio: 5.463398e-02	ci left: 4.762081e-02	ci right 5.030543e-02	k: 4895	n:100000
Cons ci ratio: 1.132457e-01	ci left: 1.116906e-02	ci right 1.251947e-02	k: 1183	n:100000
KS ci ratio: 1.298613e-02	ci left: 4.736601e-01	ci right 4.798613e-01	k: 47676	n:100000
PSG7   100000 perm   24 sec   (4191 perm/sec)   p_kst 4.767600e-01   p_cons 1.183000e-02   p_joint 4.895000e-02

Joint ci ratio: 4.963302e-02	ci left: 5.233016e-02	ci right 5.500252e-02	k: 5902	n:110000
Cons ci ratio: 1.079924e-01	ci left: 1.119676e-02	ci right 1.248372e-02	k: 1301	n:110000
KS ci ratio: 1.238894e-02	ci left: 4.735174e-01	ci right 4.794293e-01	k: 52412	n:110000
PSG7   110000 perm   27 sec   (4124 perm/sec)   p_kst 4.764727e-01   p_cons 1.182727e-02   p_joint 5.365455e-02

Joint ci ratio: 5.085626e-02	ci left: 4.597400e-02	ci right 4.838128e-02	k: 5660	n:120000
Cons ci ratio: 1.027151e-01	ci left: 1.137534e-02	ci right 1.261508e-02	k: 1438	n:120000
KS ci ratio: 1.185275e-02	ci left: 4.740122e-01	ci right 4.796723e-01	k: 57221	n:120000
PSG7   120000 perm   30 sec   (4058 perm/sec)   p_kst 4.768417e-01   p_cons 1.198333e-02   p_joint 4.716667e-02

Joint ci ratio: 4.625174e-02	ci left: 5.114919e-02	ci right 5.357852e-02	k: 6806	n:130000
Cons ci ratio: 9.833230e-02	ci left: 1.148271e-02	ci right 1.267767e-02	k: 1569	n:130000
KS ci ratio: 1.138205e-02	ci left: 4.743739e-01	ci right 4.798118e-01	k: 62022	n:130000
PSG7   130000 perm   33 sec   (3997 perm/sec)   p_kst 4.770923e-01   p_cons 1.206923e-02   p_joint 5.235385e-02

Outputting figure to mutsig2_images.part000000000139/PSG7.5_1284_130000_0.47709_0.012069_0.052354.png
                gene_name: PSG7
               theta_stop: 0.098 
                    nperm: 130000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.012 
      ci_cons_bounds_left: 0.011 
     ci_cons_bounds_right: 0.013 
                  p_joint: 0.052 
     ci_joint_bounds_left: 0.051 
    ci_joint_bounds_right: 0.054 

Current progress: 14 percent done.
PSG8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.607332e-02	ci left: 5.315730e-01	ci right 5.512029e-01	k: 5414	n:10000
Cons ci ratio: 5.450658e-02	ci left: 3.315077e-01	ci right 3.501851e-01	k: 3408	n:10000
KS ci ratio: 4.438670e-02	ci left: 4.283448e-01	ci right 4.478913e-01	k: 4381	n:10000
PSG8   10000 perm   2 sec   (5554 perm/sec)   p_kst 4.381000e-01   p_cons 3.408000e-01   p_joint 5.414000e-01

Outputting figure to mutsig2_images.part000000000139/PSG8.5_1322_10000_0.4381_0.3408_0.5414.png
                gene_name: PSG8
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 17 percent done.
PRSS35
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.317906e-02	ci left: 8.924146e-01	ci right 9.043522e-01	k: 8985	n:10000
Cons ci ratio: 3.548895e-02	ci left: 5.396851e-01	ci right 5.592861e-01	k: 5495	n:10000
KS ci ratio: 1.762899e-02	ci left: 8.243225e-01	ci right 8.390837e-01	k: 8318	n:10000
PRSS35   10000 perm   2 sec   (5656 perm/sec)   p_kst 8.318000e-01   p_cons 5.495000e-01   p_joint 8.985000e-01

Outputting figure to mutsig2_images.part000000000139/PRSS35.4_1246_10000_0.8318_0.5495_0.8985.png
                gene_name: PRSS35
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 19 percent done.
PSD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.045670e-02	ci left: 3.667920e-01	ci right 3.858801e-01	k: 3763	n:10000
Cons ci ratio: 3.434269e-02	ci left: 5.559172e-01	ci right 5.754445e-01	k: 5657	n:10000
KS ci ratio: 7.039249e-02	ci left: 2.282979e-01	ci right 2.450558e-01	k: 2366	n:10000
PSD2   10000 perm   2 sec   (5465 perm/sec)   p_kst 2.366000e-01   p_cons 5.657000e-01   p_joint 3.763000e-01

Outputting figure to mutsig2_images.part000000000139/PSD2.4_2372_10000_0.2366_0.5657_0.3763.png
                gene_name: PSD2
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 21 percent done.
PSG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.149354e-02	ci left: 9.154367e-01	ci right 9.261167e-01	k: 9209	n:10000
Cons ci ratio: 6.951078e-03	ci left: 9.660453e-01	ci right 9.728776e-01	k: 9696	n:10000
KS ci ratio: 1.675881e-02	ci left: 8.382657e-01	ci right 8.525325e-01	k: 8455	n:10000
PSG1   10000 perm   2 sec   (5804 perm/sec)   p_kst 8.455000e-01   p_cons 9.696000e-01   p_joint 9.209000e-01

Outputting figure to mutsig2_images.part000000000139/PSG1.4_1337_10000_0.8455_0.9696_0.9209.png
                gene_name: PSG1
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 24 percent done.
PSG5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.248945e-02	ci left: 9.020630e-01	ci right 9.134982e-01	k: 9079	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
PSG5   10000 perm   2 sec   (6072 perm/sec)   p_kst 1   p_cons 9.079000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000139/PSG5.4_1028_10000_1_0.9079_1.png
                gene_name: PSG5
               theta_stop: 0.012 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 26 percent done.
PSG9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.931618e-02	ci left: 1.884559e-01	ci right 2.041214e-01	k: 1962	n:10000
Cons ci ratio: 1.009590e-01	ci left: 1.243474e-01	ci right 1.376684e-01	k: 1309	n:10000
KS ci ratio: 3.986605e-02	ci left: 4.816553e-01	ci right 5.013497e-01	k: 4915	n:10000
PSG9   10000 perm   2 sec   (6204 perm/sec)   p_kst 4.915000e-01   p_cons 1.309000e-01   p_joint 1.962000e-01

Joint ci ratio: 3.864078e-02	ci left: 3.331349e-01	ci right 3.463117e-01	k: 6794	n:20000
Cons ci ratio: 7.081575e-02	ci left: 1.281254e-01	ci right 1.375816e-01	k: 2656	n:20000
KS ci ratio: 2.813819e-02	ci left: 4.854978e-01	ci right 4.994044e-01	k: 9849	n:20000
PSG9   20000 perm   4 sec   (5537 perm/sec)   p_kst 4.924500e-01   p_cons 1.328000e-01   p_joint 3.397000e-01

Outputting figure to mutsig2_images.part000000000139/PSG9.4_1305_20000_0.49245_0.1328_0.3397.png
                gene_name: PSG9
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 29 percent done.
PSKH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.846669e-02	ci left: 8.107017e-01	ci right 8.259124e-01	k: 8184	n:10000
KS ci ratio: 2.614451e-02	ci left: 6.829473e-01	ci right 7.011407e-01	k: 6921	n:10000
PSKH2   10000 perm   2 sec   (5952 perm/sec)   p_kst 6.921000e-01   p_cons 8.184000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000139/PSKH2.4_1168_10000_0.6921_0.8184_1.png
                gene_name: PSKH2
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 31 percent done.
PSMC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.570431e-02	ci left: 3.218765e-01	ci right 3.404219e-01	k: 3311	n:10000
Cons ci ratio: 8.406407e-02	ci left: 1.710391e-01	ci right 1.861486e-01	k: 1785	n:10000
KS ci ratio: 5.838717e-02	ci left: 3.015367e-01	ci right 3.197737e-01	k: 3106	n:10000
PSMC2   10000 perm   2 sec   (6133 perm/sec)   p_kst 3.106000e-01   p_cons 1.785000e-01   p_joint 3.311000e-01

Outputting figure to mutsig2_images.part000000000139/PSMC2.4_1350_10000_0.3106_0.1785_0.3311.png
                gene_name: PSMC2
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 33 percent done.
PSMD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.954840e-02	ci left: 4.856531e-01	ci right 5.053495e-01	k: 4955	n:10000
Cons ci ratio: 1.874557e-02	ci left: 8.061311e-01	ci right 8.214857e-01	k: 8139	n:10000
KS ci ratio: 4.136222e-02	ci left: 4.632734e-01	ci right 4.829423e-01	k: 4731	n:10000
PSMD1   10000 perm   2 sec   (5623 perm/sec)   p_kst 4.731000e-01   p_cons 8.139000e-01   p_joint 4.955000e-01

Outputting figure to mutsig2_images.part000000000139/PSMD1.4_2958_10000_0.4731_0.8139_0.4955.png
                gene_name: PSMD1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 36 percent done.
PRSS36
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.034513e-02	ci left: 7.796531e-01	ci right 7.957789e-01	k: 7878	n:10000
Cons ci ratio: 3.268081e-02	ci left: 5.801849e-01	ci right 5.995628e-01	k: 5899	n:10000
KS ci ratio: 1.847290e-02	ci left: 8.106001e-01	ci right 8.258141e-01	k: 8183	n:10000
PRSS36   10000 perm   2 sec   (5701 perm/sec)   p_kst 8.183000e-01   p_cons 5.899000e-01   p_joint 7.878000e-01

Outputting figure to mutsig2_images.part000000000139/PRSS36.3_2628_10000_0.8183_0.5899_0.7878.png
                gene_name: PRSS36
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 38 percent done.
PRX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.825929e-02	ci left: 2.394614e-01	ci right 2.564857e-01	k: 2479	n:10000
Cons ci ratio: 1.628821e-02	ci left: 8.457031e-01	ci right 8.596908e-01	k: 8528	n:10000
KS ci ratio: 1.027723e-01	ci left: 1.204354e-01	ci right 1.335827e-01	k: 1269	n:10000
PRX   10000 perm   2 sec   (5331 perm/sec)   p_kst 1.269000e-01   p_cons 8.528000e-01   p_joint 2.479000e-01

Joint ci ratio: 4.399527e-02	ci left: 2.778565e-01	ci right 2.904063e-01	k: 5682	n:20000
Cons ci ratio: 1.206424e-02	ci left: 8.356044e-01	ci right 8.457963e-01	k: 16815	n:20000
KS ci ratio: 7.202407e-02	ci left: 1.243344e-01	ci right 1.336738e-01	k: 2579	n:20000
PRX   20000 perm   4 sec   (4774 perm/sec)   p_kst 1.289500e-01   p_cons 8.407500e-01   p_joint 2.841000e-01

Outputting figure to mutsig2_images.part000000000139/PRX.3_4465_20000_0.12895_0.84075_0.2841.png
                gene_name: PRX
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 40 percent done.
PSAT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.501991e-02	ci left: 3.273369e-01	ci right 3.459583e-01	k: 3366	n:10000
Cons ci ratio: 2.852906e-02	ci left: 6.442810e-01	ci right 6.630294e-01	k: 6537	n:10000
KS ci ratio: 6.489987e-02	ci left: 2.585460e-01	ci right 2.759898e-01	k: 2672	n:10000
PSAT1   10000 perm   2 sec   (6304 perm/sec)   p_kst 2.672000e-01   p_cons 6.537000e-01   p_joint 3.366000e-01

Outputting figure to mutsig2_images.part000000000139/PSAT1.3_1149_10000_0.2672_0.6537_0.3366.png
                gene_name: PSAT1
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 43 percent done.
PSD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.052749e-02	ci left: 7.766130e-01	ci right 7.928209e-01	k: 7848	n:10000
Cons ci ratio: 4.258492e-02	ci left: 4.487971e-01	ci right 4.684270e-01	k: 4586	n:10000
KS ci ratio: 2.845350e-02	ci left: 6.454882e-01	ci right 6.642215e-01	k: 6549	n:10000
PSD   10000 perm   2 sec   (5454 perm/sec)   p_kst 6.549000e-01   p_cons 4.586000e-01   p_joint 7.848000e-01

Outputting figure to mutsig2_images.part000000000139/PSD.3_3139_10000_0.6549_0.4586_0.7848.png
                gene_name: PSD
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.79 

Current progress: 45 percent done.
PSD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.293807e-02	ci left: 5.763726e-01	ci right 5.957772e-01	k: 5861	n:10000
Cons ci ratio: 5.058591e-02	ci left: 3.655984e-01	ci right 3.846744e-01	k: 3751	n:10000
KS ci ratio: 3.889743e-02	ci left: 4.939506e-01	ci right 5.136472e-01	k: 5038	n:10000
PSD3   10000 perm   2 sec   (5282 perm/sec)   p_kst 5.038000e-01   p_cons 3.751000e-01   p_joint 5.861000e-01

Outputting figure to mutsig2_images.part000000000139/PSD3.3_3244_10000_0.5038_0.3751_0.5861.png
                gene_name: PSD3
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 48 percent done.
PSEN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.156770e-01	ci left: 9.701134e-02	ci right 1.090210e-01	k: 1029	n:10000
Cons ci ratio: 2.560455e-01	ci left: 1.996408e-02	ci right 2.591832e-02	k: 228	n:10000
KS ci ratio: 1.123029e-01	ci left: 1.024689e-01	ci right 1.147601e-01	k: 1085	n:10000
PSEN1   10000 perm   2 sec   (6248 perm/sec)   p_kst 1.085000e-01   p_cons 2.280000e-02   p_joint 1.029000e-01

Joint ci ratio: 5.904105e-02	ci left: 1.752409e-01	ci right 1.859521e-01	k: 3611	n:20000
Cons ci ratio: 1.906485e-01	ci left: 1.872403e-02	ci right 2.271702e-02	k: 413	n:20000
KS ci ratio: 7.906498e-02	ci left: 1.051060e-01	ci right 1.138079e-01	k: 2188	n:20000
PSEN1   20000 perm   4 sec   (5514 perm/sec)   p_kst 1.094000e-01   p_cons 2.065000e-02   p_joint 1.805500e-01

Joint ci ratio: 5.703564e-02	ci left: 1.321398e-01	ci right 1.399309e-01	k: 4080	n:30000
Cons ci ratio: 1.602024e-01	ci left: 1.799732e-02	ci right 2.116335e-02	k: 586	n:30000
KS ci ratio: 6.551855e-02	ci left: 1.030966e-01	ci right 1.101131e-01	k: 3197	n:30000
PSEN1   30000 perm   6 sec   (5249 perm/sec)   p_kst 1.065667e-01   p_cons 1.953333e-02   p_joint 1.360000e-01

Joint ci ratio: 5.559470e-02	ci left: 1.074682e-01	ci right 1.136385e-01	k: 4421	n:40000
Cons ci ratio: 1.395299e-01	ci left: 1.799839e-02	ci right 2.072202e-02	k: 773	n:40000
KS ci ratio: 5.671114e-02	ci left: 1.036659e-01	ci right 1.097413e-01	k: 4267	n:40000
PSEN1   40000 perm   8 sec   (5066 perm/sec)   p_kst 1.066750e-01   p_cons 1.932500e-02   p_joint 1.105250e-01

Joint ci ratio: 5.647085e-02	ci left: 8.541236e-02	ci right 9.039560e-02	k: 4394	n:50000
Cons ci ratio: 1.243092e-01	ci left: 1.828656e-02	ci right 2.072967e-02	k: 974	n:50000
KS ci ratio: 5.085222e-02	ci left: 1.035124e-01	ci right 1.089334e-01	k: 5310	n:50000
PSEN1   50000 perm   10 sec   (4933 perm/sec)   p_kst 1.062000e-01   p_cons 1.948000e-02   p_joint 8.788000e-02

Joint ci ratio: 6.266026e-02	ci left: 5.931141e-02	ci right 6.316450e-02	k: 3673	n:60000
Cons ci ratio: 1.137764e-01	ci left: 1.829514e-02	ci right 2.051836e-02	k: 1163	n:60000
KS ci ratio: 4.631270e-02	ci left: 1.041909e-01	ci right 1.091472e-01	k: 6399	n:60000
PSEN1   60000 perm   12 sec   (4818 perm/sec)   p_kst 1.066500e-01   p_cons 1.938333e-02   p_joint 6.121667e-02

Joint ci ratio: 5.913979e-02	ci left: 5.730792e-02	ci right 6.081445e-02	k: 4133	n:70000
Cons ci ratio: 1.053366e-01	ci left: 1.837715e-02	ci right 2.043439e-02	k: 1357	n:70000
KS ci ratio: 4.290837e-02	ci left: 1.042382e-01	ci right 1.088231e-01	k: 7456	n:70000
PSEN1   70000 perm   15 sec   (4715 perm/sec)   p_kst 1.065143e-01   p_cons 1.938571e-02   p_joint 5.904286e-02

Joint ci ratio: 5.580242e-02	ci left: 5.647642e-02	ci right 5.973072e-02	k: 4647	n:80000
Cons ci ratio: 9.882603e-02	ci left: 1.833347e-02	ci right 2.025161e-02	k: 1542	n:80000
KS ci ratio: 4.035018e-02	ci left: 1.033917e-01	ci right 1.076619e-01	k: 8441	n:80000
PSEN1   80000 perm   17 sec   (4617 perm/sec)   p_kst 1.055125e-01   p_cons 1.927500e-02   p_joint 5.808750e-02

Outputting figure to mutsig2_images.part000000000139/PSEN1.3_1444_80000_0.10551_0.019275_0.058088.png
                gene_name: PSEN1
               theta_stop: 0.099 
                    nperm: 80000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.019 
      ci_cons_bounds_left: 0.018 
     ci_cons_bounds_right: 0.020 
                  p_joint: 0.058 
     ci_joint_bounds_left: 0.056 
    ci_joint_bounds_right: 0.060 

Current progress: 50 percent done.
PSEN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.880045e-02	ci left: 6.399554e-01	ci right 6.587575e-01	k: 6494	n:10000
Cons ci ratio: 3.368349e-02	ci left: 5.654409e-01	ci right 5.849153e-01	k: 5752	n:10000
KS ci ratio: 3.651866e-02	ci left: 5.254655e-01	ci right 5.451139e-01	k: 5353	n:10000
PSEN2   10000 perm   2 sec   (6053 perm/sec)   p_kst 5.353000e-01   p_cons 5.752000e-01   p_joint 6.494000e-01

Outputting figure to mutsig2_images.part000000000139/PSEN2.3_1387_10000_0.5353_0.5752_0.6494.png
                gene_name: PSEN2
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 52 percent done.
PSG11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.725017e-01	ci left: 4.485094e-02	ci right 5.341415e-02	k: 490	n:10000
Cons ci ratio: 9.953727e-03	ci left: 9.346478e-01	ci right 9.440942e-01	k: 9395	n:10000
KS ci ratio: 7.268333e-01	ci left: 1.861361e-03	ci right 4.044256e-03	k: 28	n:10000
PSG11   10000 perm   2 sec   (6375 perm/sec)   p_kst 2.800000e-03   p_cons 9.395000e-01   p_joint 4.900000e-02

Joint ci ratio: 1.494591e-01	ci left: 3.076009e-02	ci right 3.577680e-02	k: 664	n:20000
Cons ci ratio: 7.002080e-03	ci left: 9.366705e-01	ci right 9.433009e-01	k: 18801	n:20000
KS ci ratio: 5.481959e-01	ci left: 1.856100e-03	ci right 3.294626e-03	k: 50	n:20000
PSG11   20000 perm   4 sec   (5655 perm/sec)   p_kst 2.500000e-03   p_cons 9.400500e-01   p_joint 3.320000e-02

Joint ci ratio: 2.444304e-01	ci left: 7.461014e-03	ci right 9.569162e-03	k: 254	n:30000
Cons ci ratio: 5.725862e-03	ci left: 9.371170e-01	ci right 9.425308e-01	k: 28196	n:30000
KS ci ratio: 3.973651e-01	ci left: 2.592756e-03	ci right 3.906364e-03	k: 96	n:30000
PSG11   30000 perm   6 sec   (5386 perm/sec)   p_kst 3.200000e-03   p_cons 9.398667e-01   p_joint 8.466667e-03

Joint ci ratio: 2.334406e-01	ci left: 6.182866e-03	ci right 7.839918e-03	k: 279	n:40000
Cons ci ratio: 4.967976e-03	ci left: 9.372717e-01	ci right 9.419642e-01	k: 37586	n:40000
KS ci ratio: 3.419265e-01	ci left: 2.716059e-03	ci right 3.857935e-03	k: 130	n:40000
PSG11   40000 perm   8 sec   (5212 perm/sec)   p_kst 3.250000e-03   p_cons 9.396500e-01   p_joint 6.975000e-03

Joint ci ratio: 2.327711e-01	ci left: 4.983585e-03	ci right 6.314797e-03	k: 281	n:50000
Cons ci ratio: 4.457828e-03	ci left: 9.371511e-01	ci right 9.413577e-01	k: 46964	n:50000
KS ci ratio: 3.261927e-01	ci left: 2.410984e-03	ci right 3.368181e-03	k: 143	n:50000
PSG11   50000 perm   10 sec   (5075 perm/sec)   p_kst 2.860000e-03   p_cons 9.392800e-01   p_joint 5.620000e-03

Joint ci ratio: 2.165163e-01	ci left: 4.845061e-03	ci right 6.036878e-03	k: 325	n:60000
Cons ci ratio: 4.144193e-03	ci left: 9.351954e-01	ci right 9.390955e-01	k: 56230	n:60000
KS ci ratio: 2.984660e-01	ci left: 2.439315e-03	ci right 3.309876e-03	k: 171	n:60000
PSG11   60000 perm   12 sec   (4944 perm/sec)   p_kst 2.850000e-03   p_cons 9.371667e-01   p_joint 5.416667e-03

Joint ci ratio: 2.072291e-01	ci left: 4.558676e-03	ci right 5.625839e-03	k: 355	n:70000
Cons ci ratio: 4.066931e-03	ci left: 9.280270e-01	ci right 9.318230e-01	k: 65096	n:70000
KS ci ratio: 2.740527e-01	ci left: 2.515234e-03	ci right 3.326841e-03	k: 203	n:70000
PSG11   70000 perm   14 sec   (4834 perm/sec)   p_kst 2.900000e-03   p_cons 9.299429e-01   p_joint 5.071429e-03

Joint ci ratio: 1.649202e-01	ci left: 6.433953e-03	ci right 7.602228e-03	k: 560	n:80000
Cons ci ratio: 3.812773e-03	ci left: 9.278560e-01	ci right 9.314128e-01	k: 74372	n:80000
KS ci ratio: 2.480315e-01	ci left: 2.726646e-03	ci right 3.510075e-03	k: 248	n:80000
PSG11   80000 perm   17 sec   (4735 perm/sec)   p_kst 3.100000e-03   p_cons 9.296500e-01   p_joint 7.000000e-03

Joint ci ratio: 1.563798e-01	ci left: 6.390929e-03	ci right 7.485658e-03	k: 623	n:90000
Cons ci ratio: 3.589345e-03	ci left: 9.281564e-01	ci right 9.315048e-01	k: 83686	n:90000
KS ci ratio: 2.302164e-01	ci left: 2.841554e-03	ci right 3.591032e-03	k: 288	n:90000
PSG11   90000 perm   19 sec   (4641 perm/sec)   p_kst 3.200000e-03   p_cons 9.298444e-01   p_joint 6.922222e-03

Joint ci ratio: 1.640109e-01	ci left: 5.214008e-03	ci right 6.155012e-03	k: 567	n:100000
Cons ci ratio: 3.387994e-03	ci left: 9.289063e-01	ci right 9.320687e-01	k: 93050	n:100000
KS ci ratio: 2.201674e-01	ci left: 2.812169e-03	ci right 3.517136e-03	k: 315	n:100000
PSG11   100000 perm   22 sec   (4554 perm/sec)   p_kst 3.150000e-03   p_cons 9.305000e-01   p_joint 5.670000e-03

Joint ci ratio: 1.543782e-01	ci left: 5.377259e-03	ci right 6.285457e-03	k: 640	n:110000
Cons ci ratio: 3.226677e-03	ci left: 9.291282e-01	ci right 9.321400e-01	k: 102371	n:110000
KS ci ratio: 2.062629e-01	ci left: 2.935197e-03	ci right 3.618680e-03	k: 359	n:110000
PSG11   110000 perm   25 sec   (4476 perm/sec)   p_kst 3.263636e-03   p_cons 9.306455e-01   p_joint 5.818182e-03

Joint ci ratio: 1.510188e-01	ci left: 5.161543e-03	ci right 6.012619e-03	k: 669	n:120000
Cons ci ratio: 3.095364e-03	ci left: 9.289372e-01	ci right 9.318253e-01	k: 111647	n:120000
KS ci ratio: 1.956723e-01	ci left: 3.007178e-03	ci right 3.667185e-03	k: 399	n:120000
PSG11   120000 perm   27 sec   (4396 perm/sec)   p_kst 3.325000e-03   p_cons 9.303917e-01   p_joint 5.575000e-03

Joint ci ratio: 1.453799e-01	ci left: 5.157077e-03	ci right 5.972908e-03	k: 722	n:130000
Cons ci ratio: 2.969665e-03	ci left: 9.291818e-01	ci right 9.319528e-01	k: 120975	n:130000
KS ci ratio: 1.902859e-01	ci left: 2.944223e-03	ci right 3.570567e-03	k: 422	n:130000
PSG11   130000 perm   30 sec   (4327 perm/sec)   p_kst 3.246154e-03   p_cons 9.305769e-01   p_joint 5.553846e-03

Joint ci ratio: 1.417127e-01	ci left: 5.050375e-03	ci right 5.827467e-03	k: 760	n:140000
Cons ci ratio: 2.864758e-03	ci left: 9.290905e-01	ci right 9.317630e-01	k: 130261	n:140000
KS ci ratio: 1.859493e-01	ci left: 2.870040e-03	ci right 3.465117e-03	k: 442	n:140000
PSG11   140000 perm   33 sec   (4260 perm/sec)   p_kst 3.157143e-03   p_cons 9.304357e-01   p_joint 5.428571e-03

Joint ci ratio: 1.337568e-01	ci left: 5.312380e-03	ci right 6.080250e-03	k: 853	n:150000
Cons ci ratio: 2.763671e-03	ci left: 9.293224e-01	ci right 9.319009e-01	k: 139593	n:150000
KS ci ratio: 1.790101e-01	ci left: 2.901386e-03	ci right 3.478082e-03	k: 477	n:150000
PSG11   150000 perm   36 sec   (4194 perm/sec)   p_kst 3.180000e-03   p_cons 9.306200e-01   p_joint 5.686667e-03

Joint ci ratio: 1.303711e-01	ci left: 5.252304e-03	ci right 5.990784e-03	k: 898	n:160000
Cons ci ratio: 2.677616e-03	ci left: 9.292808e-01	ci right 9.317786e-01	k: 148886	n:160000
KS ci ratio: 1.741617e-01	ci left: 2.881339e-03	ci right 3.436906e-03	k: 504	n:160000
PSG11   160000 perm   39 sec   (4132 perm/sec)   p_kst 3.150000e-03   p_cons 9.305375e-01   p_joint 5.612500e-03

Joint ci ratio: 1.283282e-01	ci left: 5.108388e-03	ci right 5.814521e-03	k: 927	n:170000
Cons ci ratio: 2.601017e-03	ci left: 9.291504e-01	ci right 9.315761e-01	k: 158163	n:170000
KS ci ratio: 1.687351e-01	ci left: 2.897639e-03	ci right 3.437171e-03	k: 537	n:170000
PSG11   170000 perm   42 sec   (4073 perm/sec)   p_kst 3.158824e-03   p_cons 9.303706e-01   p_joint 5.452941e-03

Joint ci ratio: 1.228769e-01	ci left: 5.276625e-03	ci right 5.972776e-03	k: 1011	n:180000
Cons ci ratio: 2.528565e-03	ci left: 9.291419e-01	ci right 9.314998e-01	k: 167459	n:180000
KS ci ratio: 1.629295e-01	ci left: 2.944342e-03	ci right 3.471859e-03	k: 576	n:180000
PSG11   180000 perm   45 sec   (4015 perm/sec)   p_kst 3.200000e-03   p_cons 9.303278e-01   p_joint 5.616667e-03

Joint ci ratio: 1.044170e-01	ci left: 6.978517e-03	ci right 7.752417e-03	k: 1398	n:190000
Cons ci ratio: 2.458749e-03	ci left: 9.292996e-01	ci right 9.315925e-01	k: 176786	n:190000
KS ci ratio: 1.574285e-01	ci left: 2.996524e-03	ci right 3.513553e-03	k: 617	n:190000
PSG11   190000 perm   48 sec   (3956 perm/sec)   p_kst 3.247368e-03   p_cons 9.304526e-01   p_joint 7.357895e-03

Joint ci ratio: 9.996421e-02	ci left: 7.248416e-03	ci right 8.015958e-03	k: 1525	n:200000
Cons ci ratio: 2.400979e-03	ci left: 9.290846e-01	ci right 9.313229e-01	k: 186042	n:200000
KS ci ratio: 1.544612e-01	ci left: 2.962011e-03	ci right 3.462559e-03	k: 641	n:200000
PSG11   200000 perm   51 sec   (3899 perm/sec)   p_kst 3.205000e-03   p_cons 9.302100e-01   p_joint 7.625000e-03

Joint ci ratio: 9.728929e-02	ci left: 7.298041e-03	ci right 8.048978e-03	k: 1610	n:210000
Cons ci ratio: 2.339080e-03	ci left: 9.293369e-01	ci right 9.315179e-01	k: 195391	n:210000
KS ci ratio: 1.504144e-01	ci left: 2.981275e-03	ci right 3.470692e-03	k: 676	n:210000
PSG11   210000 perm   55 sec   (3843 perm/sec)   p_kst 3.219048e-03   p_cons 9.304333e-01   p_joint 7.666667e-03

Joint ci ratio: 7.336944e-02	ci left: 1.233889e-02	ci right 1.328310e-02	k: 2817	n:220000
Cons ci ratio: 2.284924e-03	ci left: 9.293836e-01	ci right 9.315141e-01	k: 204700	n:220000
KS ci ratio: 1.470850e-01	ci left: 2.981427e-03	ci right 3.459083e-03	k: 707	n:220000
PSG11   220000 perm   58 sec   (3791 perm/sec)   p_kst 3.213636e-03   p_cons 9.304545e-01   p_joint 1.280455e-02

Joint ci ratio: 9.276279e-02	ci left: 7.346808e-03	ci right 8.065681e-03	k: 1771	n:230000
Cons ci ratio: 2.235188e-03	ci left: 9.293787e-01	ci right 9.314626e-01	k: 213998	n:230000
KS ci ratio: 1.436751e-01	ci left: 2.994250e-03	ci right 3.461886e-03	k: 741	n:230000
PSG11   230000 perm   62 sec   (3740 perm/sec)   p_kst 3.221739e-03   p_cons 9.304261e-01   p_joint 7.700000e-03

Joint ci ratio: 6.815600e-02	ci left: 1.313222e-02	ci right 1.406291e-02	k: 3262	n:240000
Cons ci ratio: 2.184409e-03	ci left: 9.296221e-01	ci right 9.316591e-01	k: 223355	n:240000
KS ci ratio: 1.402202e-01	ci left: 3.018184e-03	ci right 3.477275e-03	k: 778	n:240000
PSG11   240000 perm   65 sec   (3690 perm/sec)   p_kst 3.241667e-03   p_cons 9.306458e-01   p_joint 1.359167e-02

Joint ci ratio: 8.837780e-02	ci left: 7.462782e-03	ci right 8.156702e-03	k: 1951	n:250000
Cons ci ratio: 2.142491e-03	ci left: 9.295082e-01	ci right 9.315058e-01	k: 232628	n:250000
KS ci ratio: 1.407742e-01	ci left: 2.874286e-03	ci right 3.313360e-03	k: 772	n:250000
PSG11   250000 perm   69 sec   (3641 perm/sec)   p_kst 3.088000e-03   p_cons 9.305120e-01   p_joint 7.804000e-03

Joint ci ratio: 9.005631e-02	ci left: 6.908678e-03	ci right 7.563917e-03	k: 1880	n:260000
Cons ci ratio: 2.101266e-03	ci left: 9.295042e-01	ci right 9.314631e-01	k: 241927	n:260000
KS ci ratio: 1.382926e-01	ci left: 2.867668e-03	ci right 3.297373e-03	k: 800	n:260000
PSG11   260000 perm   72 sec   (3593 perm/sec)   p_kst 3.076923e-03   p_cons 9.304885e-01   p_joint 7.230769e-03

Joint ci ratio: 9.394343e-02	ci left: 6.106284e-03	ci right 6.711792e-03	k: 1729	n:270000
Cons ci ratio: 2.061919e-03	ci left: 9.295268e-01	ci right 9.314491e-01	k: 251233	n:270000
KS ci ratio: 1.357736e-01	ci left: 2.868760e-03	ci right 3.290166e-03	k: 830	n:270000
PSG11   270000 perm   76 sec   (3548 perm/sec)   p_kst 3.074074e-03   p_cons 9.304926e-01   p_joint 6.403704e-03

Joint ci ratio: 9.212342e-02	ci left: 6.128901e-03	ci right 6.724242e-03	k: 1798	n:280000
Cons ci ratio: 2.026100e-03	ci left: 9.294584e-01	ci right 9.313470e-01	k: 260514	n:280000
KS ci ratio: 1.330006e-01	ci left: 2.887104e-03	ci right 3.301858e-03	k: 865	n:280000
PSG11   280000 perm   80 sec   (3503 perm/sec)   p_kst 3.089286e-03   p_cons 9.304071e-01   p_joint 6.421429e-03

Joint ci ratio: 9.072352e-02	ci left: 6.106244e-03	ci right 6.689893e-03	k: 1854	n:290000
Cons ci ratio: 1.992241e-03	ci left: 9.293845e-01	ci right 9.312413e-01	k: 269792	n:290000
KS ci ratio: 1.311228e-01	ci left: 2.870906e-03	ci right 3.277056e-03	k: 890	n:290000
PSG11   290000 perm   84 sec   (3459 perm/sec)   p_kst 3.068966e-03   p_cons 9.303172e-01   p_joint 6.393103e-03

Joint ci ratio: 8.936203e-02	ci left: 6.088422e-03	ci right 6.661177e-03	k: 1911	n:300000
Cons ci ratio: 1.960022e-03	ci left: 9.293159e-01	ci right 9.311424e-01	k: 279070	n:300000
KS ci ratio: 1.296778e-01	ci left: 2.839698e-03	ci right 3.236665e-03	k: 910	n:300000
PSG11   300000 perm   88 sec   (3415 perm/sec)   p_kst 3.033333e-03   p_cons 9.302333e-01   p_joint 6.370000e-03

Joint ci ratio: 8.963108e-02	ci left: 5.857300e-03	ci right 6.410058e-03	k: 1900	n:310000
Cons ci ratio: 1.929410e-03	ci left: 9.292455e-01	ci right 9.310433e-01	k: 288346	n:310000
KS ci ratio: 1.280040e-01	ci left: 2.823017e-03	ci right 3.212172e-03	k: 934	n:310000
PSG11   310000 perm   92 sec   (3372 perm/sec)   p_kst 3.012903e-03   p_cons 9.301484e-01   p_joint 6.129032e-03

Joint ci ratio: 7.619599e-02	ci left: 7.890439e-03	ci right 8.518516e-03	k: 2624	n:320000
Cons ci ratio: 1.900597e-03	ci left: 9.291514e-01	ci right 9.309221e-01	k: 297613	n:320000
KS ci ratio: 1.254780e-01	ci left: 2.849785e-03	ci right 3.234302e-03	k: 972	n:320000
PSG11   320000 perm   96 sec   (3331 perm/sec)   p_kst 3.037500e-03   p_cons 9.300406e-01   p_joint 8.200000e-03

Joint ci ratio: 7.389918e-02	ci left: 8.141991e-03	ci right 8.769717e-03	k: 2789	n:330000
Cons ci ratio: 1.872249e-03	ci left: 9.291181e-01	ci right 9.308622e-01	k: 306898	n:330000
KS ci ratio: 1.226102e-01	ci left: 2.898502e-03	ci right 3.280004e-03	k: 1018	n:330000
PSG11   330000 perm   100 sec   (3290 perm/sec)   p_kst 3.084848e-03   p_cons 9.299939e-01   p_joint 8.451515e-03

Joint ci ratio: 7.286244e-02	ci left: 8.133496e-03	ci right 8.751397e-03	k: 2869	n:340000
Cons ci ratio: 1.845632e-03	ci left: 9.290515e-01	ci right 9.307706e-01	k: 316171	n:340000
KS ci ratio: 1.210762e-01	ci left: 2.887390e-03	ci right 3.262335e-03	k: 1044	n:340000
PSG11   340000 perm   105 sec   (3247 perm/sec)   p_kst 3.070588e-03   p_cons 9.299147e-01   p_joint 8.438235e-03

Joint ci ratio: 7.181906e-02	ci left: 8.136769e-03	ci right 8.745697e-03	k: 2953	n:350000
Cons ci ratio: 1.817723e-03	ci left: 9.291612e-01	ci right 9.308545e-01	k: 325504	n:350000
KS ci ratio: 1.192082e-01	ci left: 2.896346e-03	ci right 3.266242e-03	k: 1077	n:350000
PSG11   350000 perm   109 sec   (3208 perm/sec)   p_kst 3.077143e-03   p_cons 9.300114e-01   p_joint 8.437143e-03

Joint ci ratio: 7.071369e-02	ci left: 8.164481e-03	ci right 8.765693e-03	k: 3046	n:360000
Cons ci ratio: 1.791500e-03	ci left: 9.292315e-01	ci right 9.309005e-01	k: 334825	n:360000
KS ci ratio: 1.171599e-01	ci left: 2.918329e-03	ci right 3.284186e-03	k: 1115	n:360000
PSG11   360000 perm   114 sec   (3171 perm/sec)   p_kst 3.097222e-03   p_cons 9.300694e-01   p_joint 8.461111e-03

Joint ci ratio: 7.008683e-02	ci left: 8.089840e-03	ci right 8.680060e-03	k: 3101	n:370000
Cons ci ratio: 1.766525e-03	ci left: 9.292873e-01	ci right 9.309330e-01	k: 344142	n:370000
KS ci ratio: 1.153643e-01	ci left: 2.931300e-03	ci right 3.292767e-03	k: 1150	n:370000
PSG11   370000 perm   118 sec   (3135 perm/sec)   p_kst 3.108108e-03   p_cons 9.301135e-01   p_joint 8.381081e-03

Joint ci ratio: 6.929943e-02	ci left: 8.060531e-03	ci right 8.641740e-03	k: 3172	n:380000
Cons ci ratio: 1.744013e-03	ci left: 9.292318e-01	ci right 9.308564e-01	k: 353418	n:380000
KS ci ratio: 1.139381e-01	ci left: 2.928288e-03	ci right 3.284619e-03	k: 1179	n:380000
PSG11   380000 perm   123 sec   (3099 perm/sec)   p_kst 3.102632e-03   p_cons 9.300474e-01   p_joint 8.347368e-03

Joint ci ratio: 6.842110e-02	ci left: 8.060487e-03	ci right 8.634033e-03	k: 3254	n:390000
Cons ci ratio: 1.721320e-03	ci left: 9.292566e-01	ci right 9.308601e-01	k: 362724	n:390000
KS ci ratio: 1.127040e-01	ci left: 2.917980e-03	ci right 3.268955e-03	k: 1205	n:390000
PSG11   390000 perm   127 sec   (3064 perm/sec)   p_kst 3.089744e-03   p_cons 9.300615e-01   p_joint 8.343590e-03

Joint ci ratio: 6.749381e-02	ci left: 8.080154e-03	ci right 8.647003e-03	k: 3344	n:400000
Cons ci ratio: 1.701515e-03	ci left: 9.291245e-01	ci right 9.307092e-01	k: 371968	n:400000
KS ci ratio: 1.109683e-01	ci left: 2.937374e-03	ci right 3.284885e-03	k: 1243	n:400000
PSG11   400000 perm   132 sec   (3029 perm/sec)   p_kst 3.107500e-03   p_cons 9.299200e-01   p_joint 8.360000e-03

Joint ci ratio: 6.641823e-02	ci left: 8.144488e-03	ci right 8.706394e-03	k: 3453	n:410000
Cons ci ratio: 1.679133e-03	ci left: 9.292515e-01	ci right 9.308156e-01	k: 381315	n:410000
KS ci ratio: 1.099576e-01	ci left: 2.920277e-03	ci right 3.262415e-03	k: 1266	n:410000
PSG11   410000 perm   137 sec   (2994 perm/sec)   p_kst 3.087805e-03   p_cons 9.300366e-01   p_joint 8.421951e-03

Joint ci ratio: 6.561571e-02	ci left: 8.149613e-03	ci right 8.704820e-03	k: 3538	n:420000
Cons ci ratio: 1.658790e-03	ci left: 9.292792e-01	ci right 9.308243e-01	k: 390623	n:420000
KS ci ratio: 1.087627e-01	ci left: 2.915590e-03	ci right 3.253228e-03	k: 1294	n:420000
PSG11   420000 perm   142 sec   (2959 perm/sec)   p_kst 3.080952e-03   p_cons 9.300548e-01   p_joint 8.423810e-03

Joint ci ratio: 6.159842e-02	ci left: 9.042731e-03	ci right 9.619724e-03	k: 4011	n:430000
Cons ci ratio: 1.639609e-03	ci left: 9.292707e-01	ci right 9.307979e-01	k: 399916	n:430000
KS ci ratio: 1.070394e-01	ci left: 2.942826e-03	ci right 3.277879e-03	k: 1336	n:430000
PSG11   430000 perm   147 sec   (2924 perm/sec)   p_kst 3.106977e-03   p_cons 9.300372e-01   p_joint 9.327907e-03

Joint ci ratio: 5.907860e-02	ci left: 9.614038e-03	ci right 1.020153e-02	k: 4358	n:440000
Cons ci ratio: 1.620116e-03	ci left: 9.293403e-01	ci right 9.308494e-01	k: 409243	n:440000
KS ci ratio: 1.059752e-01	ci left: 2.935672e-03	ci right 3.266380e-03	k: 1363	n:440000
PSG11   440000 perm   152 sec   (2889 perm/sec)   p_kst 3.097727e-03   p_cons 9.300977e-01   p_joint 9.904545e-03

Joint ci ratio: 6.576553e-02	ci left: 7.575632e-03	ci right 8.092958e-03	k: 3524	n:450000
Cons ci ratio: 1.601575e-03	ci left: 9.293846e-01	ci right 9.308765e-01	k: 418560	n:450000
KS ci ratio: 9.411921e-02	ci left: 3.659214e-03	ci right 4.022776e-03	k: 1727	n:450000
PSG11   450000 perm   158 sec   (2857 perm/sec)   p_kst 3.837778e-03   p_cons 9.301333e-01   p_joint 7.831111e-03

Outputting figure to mutsig2_images.part000000000139/PSG11.3_1028_450000_0.0038378_0.93013_0.0078311.png
                gene_name: PSG11
               theta_stop: 0.094 
                    nperm: 450000 
                     p_ks: 0.0038 
        ci_ks_bounds_left: 0.0037 
       ci_ks_bounds_right: 0.0040 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.0078 
     ci_joint_bounds_left: 0.0076 
    ci_joint_bounds_right: 0.0081 

Current progress: 55 percent done.
PSMC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.014148e-02	ci left: 6.188425e-01	ci right 6.378826e-01	k: 6284	n:10000
KS ci ratio: 3.286347e-02	ci left: 5.774761e-01	ci right 5.968731e-01	k: 5872	n:10000
PSMC5   10000 perm   2 sec   (6052 perm/sec)   p_kst 5.872000e-01   p_cons 6.284000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000139/PSMC5.3_1269_10000_0.5872_0.6284_1.png
                gene_name: PSMC5
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 57 percent done.
PSMD14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.541190e-03	ci left: 9.775957e-01	ci right 9.831195e-01	k: 9805	n:10000
Cons ci ratio: 2.648848e-02	ci left: 6.773041e-01	ci right 6.955872e-01	k: 6865	n:10000
KS ci ratio: 2.333176e-02	ci left: 7.296672e-01	ci right 7.469937e-01	k: 7384	n:10000
PSMD14   10000 perm   2 sec   (6339 perm/sec)   p_kst 7.384000e-01   p_cons 6.865000e-01   p_joint 9.805000e-01

Outputting figure to mutsig2_images.part000000000139/PSMD14.3_973_10000_0.7384_0.6865_0.9805.png
                gene_name: PSMD14
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 60 percent done.
PSMD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.291219e-02	ci left: 4.450047e-01	ci right 4.646217e-01	k: 4548	n:10000
Cons ci ratio: 4.594381e-02	ci left: 4.114968e-01	ci right 4.309491e-01	k: 4212	n:10000
KS ci ratio: 4.450408e-02	ci left: 4.270484e-01	ci right 4.465885e-01	k: 4368	n:10000
PSMD3   10000 perm   2 sec   (6167 perm/sec)   p_kst 4.368000e-01   p_cons 4.212000e-01   p_joint 4.548000e-01

Outputting figure to mutsig2_images.part000000000139/PSMD3.3_1653_10000_0.4368_0.4212_0.4548.png
                gene_name: PSMD3
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.46 

Current progress: 62 percent done.
PSMD7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.091704e-01	ci left: 1.079317e-01	ci right 1.204941e-01	k: 1141	n:10000
Cons ci ratio: 8.375026e-02	ci left: 1.721207e-01	ci right 1.872663e-01	k: 1796	n:10000
KS ci ratio: 1.447756e-01	ci left: 6.333545e-02	ci right 7.331780e-02	k: 682	n:10000
PSMD7   10000 perm   2 sec   (6245 perm/sec)   p_kst 6.820000e-02   p_cons 1.796000e-01   p_joint 1.141000e-01

Joint ci ratio: 8.409164e-02	ci left: 9.386410e-02	ci right 1.021532e-01	k: 1959	n:20000
Cons ci ratio: 5.995459e-02	ci left: 1.707940e-01	ci right 1.814004e-01	k: 3521	n:20000
KS ci ratio: 1.020536e-01	ci left: 6.518352e-02	ci right 7.224249e-02	k: 1373	n:20000
PSMD7   20000 perm   4 sec   (5532 perm/sec)   p_kst 6.865000e-02   p_cons 1.760500e-01   p_joint 9.795000e-02

Joint ci ratio: 6.809746e-02	ci left: 9.606938e-02	ci right 1.028751e-01	k: 2983	n:30000
Cons ci ratio: 4.859054e-02	ci left: 1.739173e-01	ci right 1.826118e-01	k: 5347	n:30000
KS ci ratio: 8.268265e-02	ci left: 6.681093e-02	ci right 7.260607e-02	k: 2090	n:30000
PSMD7   30000 perm   6 sec   (5241 perm/sec)   p_kst 6.966667e-02   p_cons 1.782333e-01   p_joint 9.943333e-02

Outputting figure to mutsig2_images.part000000000139/PSMD7.3_1003_30000_0.069667_0.17823_0.099433.png
                gene_name: PSMD7
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.070 
        ci_ks_bounds_left: 0.067 
       ci_ks_bounds_right: 0.073 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.099 
     ci_joint_bounds_left: 0.096 
    ci_joint_bounds_right: 0.10 

Current progress: 64 percent done.
PRSS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.705039e-02	ci left: 5.182587e-01	ci right 5.379249e-01	k: 5281	n:10000
Cons ci ratio: 1.024770e-02	ci left: 9.311281e-01	ci right 9.408160e-01	k: 9361	n:10000
KS ci ratio: 5.516803e-02	ci left: 3.261455e-01	ci right 3.447505e-01	k: 3354	n:10000
PRSS3   10000 perm   2 sec   (6648 perm/sec)   p_kst 3.354000e-01   p_cons 9.361000e-01   p_joint 5.281000e-01

Outputting figure to mutsig2_images.part000000000139/PRSS3.2_979_10000_0.3354_0.9361_0.5281.png
                gene_name: PRSS3
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 67 percent done.
PRSS37
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.468637e-02	ci left: 5.510064e-01	ci right 5.705582e-01	k: 5608	n:10000
Cons ci ratio: 4.018633e-02	ci left: 4.776581e-01	ci right 4.973492e-01	k: 4875	n:10000
KS ci ratio: 8.552514e-02	ci left: 1.661239e-01	ci right 1.810667e-01	k: 1735	n:10000
PRSS37   10000 perm   1 sec   (6906 perm/sec)   p_kst 1.735000e-01   p_cons 4.875000e-01   p_joint 5.608000e-01

Outputting figure to mutsig2_images.part000000000139/PRSS37.2_728_10000_0.1735_0.4875_0.5608.png
                gene_name: PRSS37
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 69 percent done.
PRSS42
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.689486e-01	ci left: 1.799971e-02	ci right 2.368423e-02	k: 207	n:10000
Cons ci ratio: 3.301551e-01	ci left: 1.160595e-02	ci right 1.628351e-02	k: 138	n:10000
KS ci ratio: 2.198608e-02	ci left: 7.522125e-01	ci right 7.690354e-01	k: 7607	n:10000
PRSS42   10000 perm   1 sec   (6800 perm/sec)   p_kst 7.607000e-01   p_cons 1.380000e-02   p_joint 2.070000e-02

Joint ci ratio: 2.013387e-01	ci left: 1.672525e-02	ci right 2.051654e-02	k: 371	n:20000
Cons ci ratio: 2.309462e-01	ci left: 1.255904e-02	ci right 1.588439e-02	k: 283	n:20000
KS ci ratio: 1.557858e-02	ci left: 7.539681e-01	ci right 7.658563e-01	k: 15199	n:20000
PRSS42   20000 perm   3 sec   (5918 perm/sec)   p_kst 7.599500e-01   p_cons 1.415000e-02   p_joint 1.855000e-02

Joint ci ratio: 1.833964e-01	ci left: 1.362316e-02	ci right 1.640526e-02	k: 449	n:30000
Cons ci ratio: 1.897008e-01	ci left: 1.270105e-02	ci right 1.539427e-02	k: 420	n:30000
KS ci ratio: 1.265537e-02	ci left: 7.569378e-01	ci right 7.666115e-01	k: 22854	n:30000
PRSS42   30000 perm   5 sec   (5591 perm/sec)   p_kst 7.618000e-01   p_cons 1.400000e-02   p_joint 1.496667e-02

Joint ci ratio: 1.620085e-01	ci left: 1.325537e-02	ci right 1.561589e-02	k: 576	n:40000
Cons ci ratio: 1.659942e-01	ci left: 1.260773e-02	ci right 1.491366e-02	k: 549	n:40000
KS ci ratio: 1.093195e-02	ci left: 7.585246e-01	ci right 7.668873e-01	k: 30509	n:40000
PRSS42   40000 perm   7 sec   (5403 perm/sec)   p_kst 7.627250e-01   p_cons 1.372500e-02   p_joint 1.440000e-02

Joint ci ratio: 1.449306e-01	ci left: 1.337404e-02	ci right 1.548289e-02	k: 720	n:50000
Cons ci ratio: 1.486346e-01	ci left: 1.269942e-02	ci right 1.475761e-02	k: 685	n:50000
KS ci ratio: 9.802818e-03	ci left: 7.580410e-01	ci right 7.655285e-01	k: 38090	n:50000
PRSS42   50000 perm   10 sec   (5242 perm/sec)   p_kst 7.618000e-01   p_cons 1.370000e-02   p_joint 1.440000e-02

Joint ci ratio: 1.304939e-01	ci left: 1.384899e-02	ci right 1.579835e-02	k: 888	n:60000
Cons ci ratio: 1.353680e-01	ci left: 1.284956e-02	ci right 1.473123e-02	k: 826	n:60000
KS ci ratio: 8.961448e-03	ci left: 7.578514e-01	ci right 7.646900e-01	k: 45677	n:60000
PRSS42   60000 perm   12 sec   (5112 perm/sec)   p_kst 7.612833e-01   p_cons 1.376667e-02   p_joint 1.480000e-02

Joint ci ratio: 1.216602e-01	ci left: 1.372447e-02	ci right 1.551609e-02	k: 1022	n:70000
Cons ci ratio: 1.244037e-01	ci left: 1.311499e-02	ci right 1.486850e-02	k: 978	n:70000
KS ci ratio: 8.300875e-03	ci left: 7.579232e-01	ci right 7.642551e-01	k: 53277	n:70000
PRSS42   70000 perm   14 sec   (4996 perm/sec)   p_kst 7.611000e-01   p_cons 1.397143e-02   p_joint 1.460000e-02

Joint ci ratio: 7.862126e-02	ci left: 2.895134e-02	ci right 3.133289e-02	k: 2410	n:80000
Cons ci ratio: 1.153722e-01	ci left: 1.340368e-02	ci right 1.505682e-02	k: 1137	n:80000
KS ci ratio: 7.762089e-03	ci left: 7.582550e-01	ci right 7.641760e-01	k: 60898	n:80000
PRSS42   80000 perm   16 sec   (4890 perm/sec)   p_kst 7.612250e-01   p_cons 1.421250e-02   p_joint 3.012500e-02

Joint ci ratio: 7.304042e-02	ci left: 2.987726e-02	ci right 3.215310e-02	k: 2790	n:90000
Cons ci ratio: 1.087417e-01	ci left: 1.345878e-02	ci right 1.501720e-02	k: 1280	n:90000
KS ci ratio: 7.304133e-03	ci left: 7.591257e-01	ci right 7.647018e-01	k: 68573	n:90000
PRSS42   90000 perm   19 sec   (4793 perm/sec)   p_kst 7.619222e-01   p_cons 1.422222e-02   p_joint 3.100000e-02

Joint ci ratio: 4.468747e-02	ci left: 6.985111e-02	ci right 7.305380e-02	k: 7144	n:100000
Cons ci ratio: 1.028079e-01	ci left: 1.359276e-02	ci right 1.507561e-02	k: 1432	n:100000
KS ci ratio: 6.924004e-03	ci left: 7.595487e-01	ci right 7.648361e-01	k: 76220	n:100000
PRSS42   100000 perm   21 sec   (4701 perm/sec)   p_kst 7.622000e-01   p_cons 1.432000e-02   p_joint 7.144000e-02

Joint ci ratio: 6.410794e-02	ci left: 3.181788e-02	ci right 3.393412e-02	k: 3615	n:110000
Cons ci ratio: 9.822289e-02	ci left: 1.357120e-02	ci right 1.498186e-02	k: 1569	n:110000
KS ci ratio: 6.603434e-03	ci left: 7.595814e-01	ci right 7.646229e-01	k: 83832	n:110000
PRSS42   110000 perm   24 sec   (4616 perm/sec)   p_kst 7.621091e-01   p_cons 1.426364e-02   p_joint 3.286364e-02

Outputting figure to mutsig2_images.part000000000139/PRSS42.2_901_110000_0.76211_0.014264_0.032864.png
                gene_name: PRSS42
               theta_stop: 0.098 
                    nperm: 110000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.014 
      ci_cons_bounds_left: 0.014 
     ci_cons_bounds_right: 0.015 
                  p_joint: 0.033 
     ci_joint_bounds_left: 0.032 
    ci_joint_bounds_right: 0.034 

Current progress: 71 percent done.
PRSSL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.054647e-01	ci left: 1.372489e-02	ci right 1.876262e-02	k: 161	n:10000
Cons ci ratio: 1.057501e-01	ci left: 1.143760e-01	ci right 1.272458e-01	k: 1207	n:10000
KS ci ratio: 3.054647e-01	ci left: 1.372489e-02	ci right 1.876262e-02	k: 161	n:10000
PRSSL1   10000 perm   1 sec   (7071 perm/sec)   p_kst 1.610000e-02   p_cons 1.207000e-01   p_joint 1.610000e-02

Joint ci ratio: 2.684301e-01	ci left: 9.133859e-03	ci right 1.201110e-02	k: 210	n:20000
Cons ci ratio: 7.387652e-02	ci left: 1.188226e-01	ci right 1.279872e-01	k: 2467	n:20000
KS ci ratio: 2.107720e-01	ci left: 1.520650e-02	ci right 1.883587e-02	k: 339	n:20000
PRSSL1   20000 perm   3 sec   (6230 perm/sec)   p_kst 1.695000e-02   p_cons 1.233500e-01   p_joint 1.050000e-02

Joint ci ratio: 1.707387e-01	ci left: 1.579092e-02	ci right 1.877029e-02	k: 517	n:30000
Cons ci ratio: 6.059132e-02	ci left: 1.187113e-01	ci right 1.261620e-01	k: 3672	n:30000
KS ci ratio: 1.707387e-01	ci left: 1.579092e-02	ci right 1.877029e-02	k: 517	n:30000
PRSSL1   30000 perm   5 sec   (5884 perm/sec)   p_kst 1.723333e-02   p_cons 1.224000e-01   p_joint 1.723333e-02

Joint ci ratio: 1.483756e-01	ci left: 1.587624e-02	ci right 1.844454e-02	k: 685	n:40000
Cons ci ratio: 5.255534e-02	ci left: 1.188818e-01	ci right 1.253231e-01	k: 4883	n:40000
KS ci ratio: 1.483756e-01	ci left: 1.587624e-02	ci right 1.844454e-02	k: 685	n:40000
PRSSL1   40000 perm   7 sec   (5667 perm/sec)   p_kst 1.712500e-02   p_cons 1.220750e-01   p_joint 1.712500e-02

Joint ci ratio: 1.543220e-01	ci left: 1.175611e-02	ci right 1.374106e-02	k: 636	n:50000
Cons ci ratio: 4.694135e-02	ci left: 1.195194e-01	ci right 1.252845e-01	k: 6119	n:50000
KS ci ratio: 1.329087e-01	ci left: 1.596240e-02	ci right 1.825416e-02	k: 854	n:50000
PRSSL1   50000 perm   9 sec   (5489 perm/sec)   p_kst 1.708000e-02   p_cons 1.223800e-01   p_joint 1.272000e-02

Joint ci ratio: 1.749275e-01	ci left: 7.573644e-03	ci right 9.041179e-03	k: 497	n:60000
Cons ci ratio: 4.278508e-02	ci left: 1.201012e-01	ci right 1.253687e-01	k: 7363	n:60000
KS ci ratio: 1.215096e-01	ci left: 1.601305e-02	ci right 1.810071e-02	k: 1022	n:60000
PRSSL1   60000 perm   11 sec   (5356 perm/sec)   p_kst 1.703333e-02   p_cons 1.227167e-01   p_joint 8.283333e-03

Joint ci ratio: 1.609765e-01	ci left: 7.723488e-03	ci right 9.089161e-03	k: 587	n:70000
Cons ci ratio: 3.939557e-02	ci left: 1.214678e-01	ci right 1.263634e-01	k: 8673	n:70000
KS ci ratio: 1.126643e-01	ci left: 1.604139e-02	ci right 1.797037e-02	k: 1189	n:70000
PRSSL1   70000 perm   13 sec   (5218 perm/sec)   p_kst 1.698571e-02   p_cons 1.239000e-01   p_joint 8.385714e-03

Joint ci ratio: 1.496840e-01	ci left: 7.863439e-03	ci right 9.147586e-03	k: 679	n:80000
Cons ci ratio: 3.685576e-02	ci left: 1.215996e-01	ci right 1.261777e-01	k: 9910	n:80000
KS ci ratio: 1.049569e-01	ci left: 1.623728e-02	ci right 1.804798e-02	k: 1370	n:80000
PRSSL1   80000 perm   16 sec   (5097 perm/sec)   p_kst 1.712500e-02   p_cons 1.238750e-01   p_joint 8.487500e-03

Joint ci ratio: 1.412166e-01	ci left: 7.889117e-03	ci right 9.098439e-03	k: 763	n:90000
Cons ci ratio: 3.480476e-02	ci left: 1.213792e-01	ci right 1.256896e-01	k: 11117	n:90000
KS ci ratio: 9.883630e-02	ci left: 1.632809e-02	ci right 1.803657e-02	k: 1545	n:90000
PRSSL1   90000 perm   18 sec   (4989 perm/sec)   p_kst 1.716667e-02   p_cons 1.235222e-01   p_joint 8.477778e-03

Joint ci ratio: 1.173245e-01	ci left: 1.039188e-02	ci right 1.169671e-02	k: 1103	n:100000
Cons ci ratio: 3.304517e-02	ci left: 1.213178e-01	ci right 1.254041e-01	k: 12335	n:100000
KS ci ratio: 9.392525e-02	ci left: 1.631527e-02	ci right 1.793291e-02	k: 1711	n:100000
PRSSL1   100000 perm   20 sec   (4883 perm/sec)   p_kst 1.711000e-02   p_cons 1.233500e-01   p_joint 1.103000e-02

Joint ci ratio: 1.273766e-01	ci left: 7.992344e-03	ci right 9.088350e-03	k: 938	n:110000
Cons ci ratio: 3.148168e-02	ci left: 1.215882e-01	ci right 1.254862e-01	k: 13588	n:110000
KS ci ratio: 8.994868e-02	ci left: 1.620872e-02	ci right 1.774417e-02	k: 1866	n:110000
PRSSL1   110000 perm   23 sec   (4789 perm/sec)   p_kst 1.696364e-02   p_cons 1.235273e-01   p_joint 8.527273e-03

Joint ci ratio: 1.209084e-01	ci left: 8.158047e-03	ci right 9.215902e-03	k: 1041	n:120000
Cons ci ratio: 3.004480e-02	ci left: 1.223637e-01	ci right 1.261045e-01	k: 14907	n:120000
KS ci ratio: 8.604903e-02	ci left: 1.626796e-02	ci right 1.773885e-02	k: 2039	n:120000
PRSSL1   120000 perm   26 sec   (4697 perm/sec)   p_kst 1.699167e-02   p_cons 1.242250e-01   p_joint 8.675000e-03

Joint ci ratio: 8.326937e-02	ci left: 1.606310e-02	ci right 1.746627e-02	k: 2178	n:130000
Cons ci ratio: 2.884810e-02	ci left: 1.225723e-01	ci right 1.261676e-01	k: 16167	n:130000
KS ci ratio: 8.326937e-02	ci left: 1.606310e-02	ci right 1.746627e-02	k: 2178	n:130000
PRSSL1   130000 perm   28 sec   (4612 perm/sec)   p_kst 1.675385e-02   p_cons 1.243615e-01   p_joint 1.675385e-02

Outputting figure to mutsig2_images.part000000000139/PRSSL1.2_872_130000_0.016754_0.12436_0.016754.png
                gene_name: PRSSL1
               theta_stop: 0.083 
                    nperm: 130000 
                     p_ks: 0.017 
        ci_ks_bounds_left: 0.016 
       ci_ks_bounds_right: 0.017 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.017 
     ci_joint_bounds_left: 0.016 
    ci_joint_bounds_right: 0.017 

Current progress: 74 percent done.
PSG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.315740e-02	ci left: 8.927222e-01	ci right 9.046444e-01	k: 8988	n:10000
KS ci ratio: 4.332111e-02	ci left: 4.403148e-01	ci right 4.599142e-01	k: 4501	n:10000
PSG3   10000 perm   2 sec   (6390 perm/sec)   p_kst 4.501000e-01   p_cons 8.988000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000139/PSG3.2_1311_10000_0.4501_0.8988_1.png
                gene_name: PSG3
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
PSG4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.682287e-02	ci left: 8.372473e-01	ci right 8.515515e-01	k: 8445	n:10000
Cons ci ratio: 1.317184e-02	ci left: 8.925171e-01	ci right 9.044496e-01	k: 8986	n:10000
KS ci ratio: 2.666705e-02	ci left: 6.743823e-01	ci right 6.927107e-01	k: 6836	n:10000
PSG4   10000 perm   2 sec   (6431 perm/sec)   p_kst 6.836000e-01   p_cons 8.986000e-01   p_joint 8.445000e-01

Outputting figure to mutsig2_images.part000000000139/PSG4.2_1284_10000_0.6836_0.8986_0.8445.png
                gene_name: PSG4
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 79 percent done.
PSIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.689464e-02	ci left: 3.126467e-01	ci right 3.310572e-01	k: 3218	n:10000
Cons ci ratio: 8.184094e-02	ci left: 1.789079e-01	ci right 1.942751e-01	k: 1865	n:10000
KS ci ratio: 6.735644e-02	ci left: 2.444035e-01	ci right 2.615407e-01	k: 2529	n:10000
PSIP1   10000 perm   2 sec   (6319 perm/sec)   p_kst 2.529000e-01   p_cons 1.865000e-01   p_joint 3.218000e-01

Outputting figure to mutsig2_images.part000000000139/PSIP1.2_1682_10000_0.2529_0.1865_0.3218.png
                gene_name: PSIP1
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 81 percent done.
PSMA8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.702584e-01	ci left: 5.284222e-03	ci right 8.612765e-03	k: 68	n:10000
Cons ci ratio: 1.229981e-01	ci left: 8.650182e-02	ci right 9.793702e-02	k: 921	n:10000
KS ci ratio: 4.702584e-01	ci left: 5.284222e-03	ci right 8.612765e-03	k: 68	n:10000
PSMA8   10000 perm   1 sec   (6935 perm/sec)   p_kst 6.800000e-03   p_cons 9.210000e-02   p_joint 6.800000e-03

Joint ci ratio: 3.523572e-01	ci left: 5.068179e-03	ci right 7.279094e-03	k: 122	n:20000
Cons ci ratio: 8.640790e-02	ci left: 8.925437e-02	ci right 9.736432e-02	k: 1865	n:20000
KS ci ratio: 3.523572e-01	ci left: 5.068179e-03	ci right 7.279094e-03	k: 122	n:20000
PSMA8   20000 perm   3 sec   (6151 perm/sec)   p_kst 6.100000e-03   p_cons 9.325000e-02   p_joint 6.100000e-03

Joint ci ratio: 2.912969e-01	ci left: 5.126645e-03	ci right 6.904401e-03	k: 179	n:30000
Cons ci ratio: 6.996109e-02	ci left: 9.140941e-02	ci right 9.806931e-02	k: 2841	n:30000
KS ci ratio: 2.912969e-01	ci left: 5.126645e-03	ci right 6.904401e-03	k: 179	n:30000
PSMA8   30000 perm   5 sec   (5825 perm/sec)   p_kst 5.966667e-03   p_cons 9.470000e-02   p_joint 5.966667e-03

Joint ci ratio: 2.948267e-01	ci left: 3.751922e-03	ci right 5.071619e-03	k: 175	n:40000
Cons ci ratio: 6.045912e-02	ci left: 9.221750e-02	ci right 9.799144e-02	k: 3803	n:40000
KS ci ratio: 2.528019e-01	ci left: 5.219877e-03	ci right 6.753176e-03	k: 238	n:40000
PSMA8   40000 perm   7 sec   (5579 perm/sec)   p_kst 5.950000e-03   p_cons 9.507500e-02   p_joint 4.375000e-03

Joint ci ratio: 2.174068e-01	ci left: 5.757640e-03	ci right 7.180572e-03	k: 322	n:50000
Cons ci ratio: 5.382035e-02	ci left: 9.333255e-02	ci right 9.851447e-02	k: 4795	n:50000
KS ci ratio: 2.174068e-01	ci left: 5.757640e-03	ci right 7.180572e-03	k: 322	n:50000
PSMA8   50000 perm   9 sec   (5402 perm/sec)   p_kst 6.440000e-03   p_cons 9.590000e-02   p_joint 6.440000e-03

Joint ci ratio: 1.996607e-01	ci left: 5.745887e-03	ci right 7.035891e-03	k: 382	n:60000
Cons ci ratio: 4.938396e-02	ci left: 9.268161e-02	ci right 9.739098e-02	k: 5701	n:60000
KS ci ratio: 1.996607e-01	ci left: 5.745887e-03	ci right 7.035891e-03	k: 382	n:60000
PSMA8   60000 perm   11 sec   (5258 perm/sec)   p_kst 6.366667e-03   p_cons 9.501667e-02   p_joint 6.366667e-03

Joint ci ratio: 1.809838e-01	ci left: 6.054469e-03	ci right 7.272681e-03	k: 465	n:70000
Cons ci ratio: 4.582863e-02	ci left: 9.245580e-02	ci right 9.680644e-02	k: 6623	n:70000
KS ci ratio: 1.809838e-01	ci left: 6.054469e-03	ci right 7.272681e-03	k: 465	n:70000
PSMA8   70000 perm   14 sec   (5123 perm/sec)   p_kst 6.642857e-03   p_cons 9.461429e-02   p_joint 6.642857e-03

Joint ci ratio: 1.685907e-01	ci left: 6.146396e-03	ci right 7.289818e-03	k: 536	n:80000
Cons ci ratio: 4.287906e-02	ci left: 9.255571e-02	ci right 9.662374e-02	k: 7566	n:80000
KS ci ratio: 1.685907e-01	ci left: 6.146396e-03	ci right 7.289818e-03	k: 536	n:80000
PSMA8   80000 perm   16 sec   (4996 perm/sec)   p_kst 6.700000e-03   p_cons 9.457500e-02   p_joint 6.700000e-03

Joint ci ratio: 1.588332e-01	ci left: 6.188093e-03	ci right 7.266292e-03	k: 604	n:90000
Cons ci ratio: 4.063770e-02	ci left: 9.179270e-02	ci right 9.561131e-02	k: 8432	n:90000
KS ci ratio: 1.588332e-01	ci left: 6.188093e-03	ci right 7.266292e-03	k: 604	n:90000
PSMA8   90000 perm   18 sec   (4881 perm/sec)   p_kst 6.711111e-03   p_cons 9.368889e-02   p_joint 6.711111e-03

Joint ci ratio: 1.512752e-01	ci left: 6.165231e-03	ci right 7.183700e-03	k: 666	n:100000
Cons ci ratio: 3.864797e-02	ci left: 9.147439e-02	ci right 9.508924e-02	k: 9327	n:100000
KS ci ratio: 1.512752e-01	ci left: 6.165231e-03	ci right 7.183700e-03	k: 666	n:100000
PSMA8   100000 perm   21 sec   (4784 perm/sec)   p_kst 6.660000e-03   p_cons 9.327000e-02   p_joint 6.660000e-03

Joint ci ratio: 1.441069e-01	ci left: 6.200109e-03	ci right 7.171629e-03	k: 734	n:110000
Cons ci ratio: 3.683713e-02	ci left: 9.161444e-02	ci right 9.506158e-02	k: 10266	n:110000
KS ci ratio: 1.441069e-01	ci left: 6.200109e-03	ci right 7.171629e-03	k: 734	n:110000
PSMA8   110000 perm   23 sec   (4695 perm/sec)   p_kst 6.672727e-03   p_cons 9.332727e-02   p_joint 6.672727e-03

Joint ci ratio: 1.376971e-01	ci left: 6.246219e-03	ci right 7.177860e-03	k: 804	n:120000
Cons ci ratio: 3.539864e-02	ci left: 9.107309e-02	ci right 9.436329e-02	k: 11125	n:120000
KS ci ratio: 1.376971e-01	ci left: 6.246219e-03	ci right 7.177860e-03	k: 804	n:120000
PSMA8   120000 perm   26 sec   (4610 perm/sec)   p_kst 6.700000e-03   p_cons 9.270833e-02   p_joint 6.700000e-03

Joint ci ratio: 1.331496e-01	ci left: 6.181903e-03	ci right 7.071088e-03	k: 860	n:130000
Cons ci ratio: 3.400085e-02	ci left: 9.118219e-02	ci right 9.434369e-02	k: 12058	n:130000
KS ci ratio: 1.331496e-01	ci left: 6.181903e-03	ci right 7.071088e-03	k: 860	n:130000
PSMA8   130000 perm   29 sec   (4528 perm/sec)   p_kst 6.615385e-03   p_cons 9.275385e-02   p_joint 6.615385e-03

Joint ci ratio: 1.280445e-01	ci left: 6.224015e-03	ci right 7.082324e-03	k: 930	n:140000
Cons ci ratio: 3.284162e-02	ci left: 9.084540e-02	ci right 9.388579e-02	k: 12930	n:140000
KS ci ratio: 1.280445e-01	ci left: 6.224015e-03	ci right 7.082324e-03	k: 930	n:140000
PSMA8   140000 perm   31 sec   (4450 perm/sec)   p_kst 6.642857e-03   p_cons 9.235714e-02   p_joint 6.642857e-03

Joint ci ratio: 1.241105e-01	ci left: 6.196460e-03	ci right 7.022785e-03	k: 990	n:150000
Cons ci ratio: 3.174525e-02	ci left: 9.080667e-02	ci right 9.374244e-02	k: 13840	n:150000
KS ci ratio: 1.241105e-01	ci left: 6.196460e-03	ci right 7.022785e-03	k: 990	n:150000
PSMA8   150000 perm   34 sec   (4375 perm/sec)   p_kst 6.600000e-03   p_cons 9.226667e-02   p_joint 6.600000e-03

Joint ci ratio: 1.199450e-01	ci left: 6.233335e-03	ci right 7.034700e-03	k: 1060	n:160000
Cons ci ratio: 3.068427e-02	ci left: 9.114048e-02	ci right 9.398681e-02	k: 14809	n:160000
KS ci ratio: 1.199450e-01	ci left: 6.233335e-03	ci right 7.034700e-03	k: 1060	n:160000
PSMA8   160000 perm   37 sec   (4302 perm/sec)   p_kst 6.625000e-03   p_cons 9.255625e-02   p_joint 6.625000e-03

Joint ci ratio: 1.159150e-01	ci left: 6.294844e-03	ci right 7.075064e-03	k: 1135	n:170000
Cons ci ratio: 2.973754e-02	ci left: 9.135463e-02	ci right 9.411811e-02	k: 15764	n:170000
KS ci ratio: 1.159150e-01	ci left: 6.294844e-03	ci right 7.075064e-03	k: 1135	n:170000
PSMA8   170000 perm   40 sec   (4231 perm/sec)   p_kst 6.676471e-03   p_cons 9.272941e-02   p_joint 6.676471e-03

Joint ci ratio: 1.122657e-01	ci left: 6.349918e-03	ci right 7.110544e-03	k: 1210	n:180000
Cons ci ratio: 2.885813e-02	ci left: 9.163448e-02	ci right 9.432309e-02	k: 16735	n:180000
KS ci ratio: 1.122657e-01	ci left: 6.349918e-03	ci right 7.110544e-03	k: 1210	n:180000
PSMA8   180000 perm   43 sec   (4165 perm/sec)   p_kst 6.722222e-03   p_cons 9.297222e-02   p_joint 6.722222e-03

Joint ci ratio: 1.091544e-01	ci left: 6.373935e-03	ci right 7.114919e-03	k: 1280	n:190000
Cons ci ratio: 2.808738e-02	ci left: 9.167675e-02	ci right 9.429358e-02	k: 17666	n:190000
KS ci ratio: 1.091544e-01	ci left: 6.373935e-03	ci right 7.114919e-03	k: 1280	n:190000
PSMA8   190000 perm   46 sec   (4099 perm/sec)   p_kst 6.736842e-03   p_cons 9.297895e-02   p_joint 6.736842e-03

Joint ci ratio: 1.063279e-01	ci left: 6.390945e-03	ci right 7.113463e-03	k: 1349	n:200000
Cons ci ratio: 2.738662e-02	ci left: 9.164608e-02	ci right 9.419574e-02	k: 18583	n:200000
KS ci ratio: 1.063279e-01	ci left: 6.390945e-03	ci right 7.113463e-03	k: 1349	n:200000
PSMA8   200000 perm   50 sec   (4036 perm/sec)   p_kst 6.745000e-03   p_cons 9.291500e-02   p_joint 6.745000e-03

Joint ci ratio: 1.038947e-01	ci left: 6.383363e-03	ci right 7.087500e-03	k: 1413	n:210000
Cons ci ratio: 2.668381e-02	ci left: 9.194566e-02	ci right 9.443701e-02	k: 19569	n:210000
KS ci ratio: 1.038947e-01	ci left: 6.383363e-03	ci right 7.087500e-03	k: 1413	n:210000
PSMA8   210000 perm   53 sec   (3976 perm/sec)   p_kst 6.728571e-03   p_cons 9.318571e-02   p_joint 6.728571e-03

Joint ci ratio: 1.017251e-01	ci left: 6.363349e-03	ci right 7.049745e-03	k: 1474	n:220000
Cons ci ratio: 2.607585e-02	ci left: 9.193860e-02	ci right 9.437213e-02	k: 20493	n:220000
KS ci ratio: 1.017251e-01	ci left: 6.363349e-03	ci right 7.049745e-03	k: 1474	n:220000
PSMA8   220000 perm   56 sec   (3918 perm/sec)   p_kst 6.700000e-03   p_cons 9.315000e-02   p_joint 6.700000e-03

Joint ci ratio: 9.926406e-02	ci left: 6.400341e-03	ci right 7.073050e-03	k: 1548	n:230000
Cons ci ratio: 2.549452e-02	ci left: 9.201919e-02	ci right 9.439976e-02	k: 21437	n:230000
KS ci ratio: 9.926406e-02	ci left: 6.400341e-03	ci right 7.073050e-03	k: 1548	n:230000
PSMA8   230000 perm   60 sec   (3861 perm/sec)   p_kst 6.730435e-03   p_cons 9.320435e-02   p_joint 6.730435e-03

Outputting figure to mutsig2_images.part000000000139/PSMA8.2_799_230000_0.0067304_0.093204_0.0067304.png
                gene_name: PSMA8
               theta_stop: 0.099 
                    nperm: 230000 
                     p_ks: 0.0067 
        ci_ks_bounds_left: 0.0064 
       ci_ks_bounds_right: 0.0071 
                   p_cons: 0.093 
      ci_cons_bounds_left: 0.092 
     ci_cons_bounds_right: 0.094 
                  p_joint: 0.0067 
     ci_joint_bounds_left: 0.0064 
    ci_joint_bounds_right: 0.0071 

Current progress: 83 percent done.
PSMB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.830206e-02	ci left: 3.873915e-01	ci right 4.066685e-01	k: 3970	n:10000
Cons ci ratio: 2.511849e-02	ci left: 6.998865e-01	ci right 7.177916e-01	k: 7089	n:10000
KS ci ratio: 5.682955e-02	ci left: 3.131428e-01	ci right 3.315608e-01	k: 3223	n:10000
PSMB4   10000 perm   1 sec   (7130 perm/sec)   p_kst 3.223000e-01   p_cons 7.089000e-01   p_joint 3.970000e-01

Outputting figure to mutsig2_images.part000000000139/PSMB4.2_823_10000_0.3223_0.7089_0.397.png
                gene_name: PSMB4
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 86 percent done.
PSMB8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.383594e-01	ci left: 6.913757e-02	ci right 7.951204e-02	k: 742	n:10000
Cons ci ratio: 2.089368e-01	ci left: 3.043932e-02	ci right 3.763545e-02	k: 339	n:10000
KS ci ratio: 1.304147e-02	ci left: 8.943634e-01	ci right 9.062022e-01	k: 9004	n:10000
PSMB8   10000 perm   1 sec   (6759 perm/sec)   p_kst 9.004000e-01   p_cons 3.390000e-02   p_joint 7.420000e-02

Joint ci ratio: 1.049967e-01	ci left: 6.171935e-02	ci right 6.860773e-02	k: 1302	n:20000
Cons ci ratio: 1.422079e-01	ci left: 3.399185e-02	ci right 3.924397e-02	k: 731	n:20000
KS ci ratio: 9.217779e-03	ci left: 8.962172e-01	ci right 9.045660e-01	k: 18009	n:20000
PSMB8   20000 perm   3 sec   (5976 perm/sec)   p_kst 9.004500e-01   p_cons 3.655000e-02   p_joint 6.510000e-02

Joint ci ratio: 8.400739e-02	ci left: 6.481705e-02	ci right 7.053369e-02	k: 2029	n:30000
Cons ci ratio: 1.129984e-01	ci left: 3.638338e-02	ci right 4.077323e-02	k: 1156	n:30000
KS ci ratio: 7.613041e-03	ci left: 8.948921e-01	ci right 9.017639e-01	k: 26951	n:30000
PSMB8   30000 perm   5 sec   (5673 perm/sec)   p_kst 8.983667e-01   p_cons 3.853333e-02   p_joint 6.763333e-02

Joint ci ratio: 7.267602e-02	ci left: 6.533066e-02	ci right 7.028230e-02	k: 2711	n:40000
Cons ci ratio: 9.781591e-02	ci left: 3.670881e-02	ci right 4.050854e-02	k: 1543	n:40000
KS ci ratio: 6.620569e-03	ci left: 8.945875e-01	ci right 9.005546e-01	k: 35904	n:40000
PSMB8   40000 perm   7 sec   (5466 perm/sec)   p_kst 8.976000e-01   p_cons 3.857500e-02   p_joint 6.777500e-02

Outputting figure to mutsig2_images.part000000000139/PSMB8.2_994_40000_0.8976_0.038575_0.067775.png
                gene_name: PSMB8
               theta_stop: 0.098 
                    nperm: 40000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.039 
      ci_cons_bounds_left: 0.037 
     ci_cons_bounds_right: 0.041 
                  p_joint: 0.068 
     ci_joint_bounds_left: 0.065 
    ci_joint_bounds_right: 0.070 

Current progress: 88 percent done.
PSMC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.627716e-02	ci left: 5.287694e-01	ci right 5.484081e-01	k: 5386	n:10000
Cons ci ratio: 4.747495e-02	ci left: 3.956563e-01	ci right 4.149989e-01	k: 4053	n:10000
KS ci ratio: 8.863152e-02	ci left: 1.563004e-01	ci right 1.708961e-01	k: 1635	n:10000
PSMC3   10000 perm   2 sec   (6558 perm/sec)   p_kst 1.635000e-01   p_cons 4.053000e-01   p_joint 5.386000e-01

Outputting figure to mutsig2_images.part000000000139/PSMC3.2_1368_10000_0.1635_0.4053_0.5386.png
                gene_name: PSMC3
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 90 percent done.
PSMC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.435067e-02	ci left: 4.287437e-01	ci right 4.482921e-01	k: 4385	n:10000
Cons ci ratio: 1.616482e-02	ci left: 8.476398e-01	ci right 8.615529e-01	k: 8547	n:10000
KS ci ratio: 4.936750e-02	ci left: 3.770397e-01	ci right 3.962264e-01	k: 3866	n:10000
PSMC4   10000 perm   2 sec   (6569 perm/sec)   p_kst 3.866000e-01   p_cons 8.547000e-01   p_joint 4.385000e-01

Outputting figure to mutsig2_images.part000000000139/PSMC4.2_1301_10000_0.3866_0.8547_0.4385.png
                gene_name: PSMC4
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 93 percent done.
PSMC6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.971741e-02	ci left: 2.317548e-01	ci right 2.485968e-01	k: 2401	n:10000
Cons ci ratio: 1.554271e-01	ci left: 5.513502e-02	ci right 6.452344e-02	k: 597	n:10000
KS ci ratio: 3.560377e-02	ci left: 5.380825e-01	ci right 5.576896e-01	k: 5479	n:10000
PSMC6   10000 perm   2 sec   (6551 perm/sec)   p_kst 5.479000e-01   p_cons 5.970000e-02   p_joint 2.401000e-01

Joint ci ratio: 4.354009e-02	ci left: 2.820781e-01	ci right 2.946835e-01	k: 5767	n:20000
Cons ci ratio: 1.076271e-01	ci left: 5.884288e-02	ci right 6.558509e-02	k: 1243	n:20000
KS ci ratio: 2.503535e-02	ci left: 5.437742e-01	ci right 5.576110e-01	k: 11014	n:20000
PSMC6   20000 perm   3 sec   (5807 perm/sec)   p_kst 5.507000e-01   p_cons 6.215000e-02   p_joint 2.883500e-01

Joint ci ratio: 3.596478e-02	ci left: 2.785371e-01	ci right 2.887715e-01	k: 8509	n:30000
Cons ci ratio: 8.691329e-02	ci left: 6.073356e-02	ci right 6.628467e-02	k: 1904	n:30000
KS ci ratio: 2.037297e-02	ci left: 5.467183e-01	ci right 5.580048e-01	k: 16571	n:30000
PSMC6   30000 perm   5 sec   (5507 perm/sec)   p_kst 5.523667e-01   p_cons 6.346667e-02   p_joint 2.836333e-01

Outputting figure to mutsig2_images.part000000000139/PSMC6.2_1268_30000_0.55237_0.063467_0.28363.png
                gene_name: PSMC6
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.063 
      ci_cons_bounds_left: 0.061 
     ci_cons_bounds_right: 0.066 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 95 percent done.
PSMD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.220289e-01	ci left: 1.224928e-02	ci right 1.703957e-02	k: 145	n:10000
Cons ci ratio: 4.509198e-01	ci left: 5.814929e-03	ci right 9.281233e-03	k: 74	n:10000
KS ci ratio: 2.741570e-02	ci left: 6.621957e-01	ci right 6.807043e-01	k: 6715	n:10000
PSMD4   10000 perm   2 sec   (6636 perm/sec)   p_kst 6.715000e-01   p_cons 7.400000e-03   p_joint 1.450000e-02

Joint ci ratio: 3.167357e-01	ci left: 6.397356e-03	ci right 8.849056e-03	k: 151	n:20000
Cons ci ratio: 3.221178e-01	ci left: 6.167283e-03	ci right 8.579269e-03	k: 146	n:20000
KS ci ratio: 1.955813e-02	ci left: 6.610224e-01	ci right 6.741289e-01	k: 13352	n:20000
PSMD4   20000 perm   3 sec   (5883 perm/sec)   p_kst 6.676000e-01   p_cons 7.300000e-03   p_joint 7.550000e-03

Joint ci ratio: 2.547049e-01	ci left: 6.835746e-03	ci right 8.861311e-03	k: 234	n:30000
Cons ci ratio: 2.597662e-01	ci left: 6.554965e-03	ci right 8.542192e-03	k: 225	n:30000
KS ci ratio: 1.599813e-02	ci left: 6.614336e-01	ci right 6.721341e-01	k: 20004	n:30000
PSMD4   30000 perm   5 sec   (5591 perm/sec)   p_kst 6.668000e-01   p_cons 7.500000e-03   p_joint 7.800000e-03

Joint ci ratio: 2.217739e-01	ci left: 6.890396e-03	ci right 8.632207e-03	k: 309	n:40000
Cons ci ratio: 2.250905e-01	ci left: 6.677907e-03	ci right 8.394749e-03	k: 300	n:40000
KS ci ratio: 1.388061e-02	ci left: 6.613285e-01	ci right 6.705974e-01	k: 26639	n:40000
PSMD4   40000 perm   7 sec   (5387 perm/sec)   p_kst 6.659750e-01   p_cons 7.500000e-03   p_joint 7.725000e-03

Joint ci ratio: 1.995320e-01	ci left: 6.895484e-03	ci right 8.442500e-03	k: 382	n:50000
Cons ci ratio: 2.027578e-01	ci left: 6.667492e-03	ci right 8.190535e-03	k: 370	n:50000
KS ci ratio: 1.236156e-02	ci left: 6.637522e-01	ci right 6.720283e-01	k: 33395	n:50000
PSMD4   50000 perm   10 sec   (5232 perm/sec)   p_kst 6.679000e-01   p_cons 7.400000e-03   p_joint 7.640000e-03

Joint ci ratio: 1.836840e-01	ci left: 6.841129e-03	ci right 8.240472e-03	k: 451	n:60000
Cons ci ratio: 1.861907e-01	ci left: 6.650328e-03	ci right 8.031302e-03	k: 439	n:60000
KS ci ratio: 1.129599e-02	ci left: 6.636639e-01	ci right 6.712199e-01	k: 40047	n:60000
PSMD4   60000 perm   12 sec   (5108 perm/sec)   p_kst 6.674500e-01   p_cons 7.316667e-03   p_joint 7.516667e-03

Joint ci ratio: 1.678803e-01	ci left: 7.079479e-03	ci right 8.390392e-03	k: 540	n:70000
Cons ci ratio: 1.697884e-01	ci left: 6.915246e-03	ci right 8.211790e-03	k: 528	n:70000
KS ci ratio: 1.044612e-02	ci left: 6.644543e-01	ci right 6.714460e-01	k: 46757	n:70000
PSMD4   70000 perm   14 sec   (4994 perm/sec)   p_kst 6.679571e-01   p_cons 7.542857e-03   p_joint 7.714286e-03

Joint ci ratio: 1.585022e-01	ci left: 6.985843e-03	ci right 8.200276e-03	k: 606	n:80000
Cons ci ratio: 1.602403e-01	ci left: 6.829781e-03	ci right 8.031356e-03	k: 593	n:80000
KS ci ratio: 9.753458e-03	ci left: 6.655013e-01	ci right 6.720365e-01	k: 53502	n:80000
PSMD4   80000 perm   16 sec   (4890 perm/sec)   p_kst 6.687750e-01   p_cons 7.412500e-03   p_joint 7.575000e-03

Joint ci ratio: 1.476903e-01	ci left: 7.192794e-03	ci right 8.350382e-03	k: 698	n:90000
Cons ci ratio: 1.497553e-01	ci left: 6.989485e-03	ci right 8.131488e-03	k: 679	n:90000
KS ci ratio: 9.175774e-03	ci left: 6.666497e-01	ci right 6.728060e-01	k: 60276	n:90000
PSMD4   90000 perm   19 sec   (4792 perm/sec)   p_kst 6.697333e-01   p_cons 7.544444e-03   p_joint 7.755556e-03

Joint ci ratio: 1.413704e-01	ci left: 7.090350e-03	ci right 8.178501e-03	k: 762	n:100000
Cons ci ratio: 1.434696e-01	ci left: 6.878136e-03	ci right 7.950733e-03	k: 740	n:100000
KS ci ratio: 8.692976e-03	ci left: 6.674165e-01	ci right 6.732536e-01	k: 67034	n:100000
PSMD4   100000 perm   21 sec   (4699 perm/sec)   p_kst 6.703400e-01   p_cons 7.400000e-03   p_joint 7.620000e-03

Joint ci ratio: 1.349779e-01	ci left: 7.095252e-03	ci right 8.130962e-03	k: 836	n:110000
Cons ci ratio: 1.368014e-01	ci left: 6.902005e-03	ci right 7.924224e-03	k: 814	n:110000
KS ci ratio: 8.296174e-03	ci left: 6.671394e-01	ci right 6.727062e-01	k: 73692	n:110000
PSMD4   110000 perm   24 sec   (4605 perm/sec)   p_kst 6.699273e-01   p_cons 7.400000e-03   p_joint 7.600000e-03

Joint ci ratio: 1.289537e-01	ci left: 7.148658e-03	ci right 8.142025e-03	k: 916	n:120000
Cons ci ratio: 1.308360e-01	ci left: 6.938983e-03	ci right 7.918381e-03	k: 890	n:120000
KS ci ratio: 7.929111e-03	ci left: 6.680327e-01	ci right 6.733590e-01	k: 80484	n:120000
PSMD4   120000 perm   27 sec   (4514 perm/sec)   p_kst 6.707000e-01   p_cons 7.416667e-03   p_joint 7.633333e-03

Joint ci ratio: 1.240469e-01	ci left: 7.149982e-03	ci right 8.102948e-03	k: 990	n:130000
Cons ci ratio: 1.259829e-01	ci left: 6.926379e-03	ci right 7.865026e-03	k: 960	n:130000
KS ci ratio: 7.605183e-03	ci left: 6.688853e-01	ci right 6.739994e-01	k: 87288	n:130000
PSMD4   130000 perm   29 sec   (4429 perm/sec)   p_kst 6.714462e-01   p_cons 7.384615e-03   p_joint 7.615385e-03

Joint ci ratio: 1.192104e-01	ci left: 7.207178e-03	ci right 8.127674e-03	k: 1072	n:140000
Cons ci ratio: 1.210427e-01	ci left: 6.985427e-03	ci right 7.892296e-03	k: 1040	n:140000
KS ci ratio: 7.328002e-03	ci left: 6.690112e-01	ci right 6.739388e-01	k: 94007	n:140000
PSMD4   140000 perm   32 sec   (4348 perm/sec)   p_kst 6.714786e-01   p_cons 7.428571e-03   p_joint 7.657143e-03

Joint ci ratio: 1.150494e-01	ci left: 7.237944e-03	ci right 8.127911e-03	k: 1151	n:150000
Cons ci ratio: 1.167990e-01	ci left: 7.017804e-03	ci right 7.894730e-03	k: 1117	n:150000
KS ci ratio: 7.086135e-03	ci left: 6.686824e-01	ci right 6.734443e-01	k: 100660	n:150000
PSMD4   150000 perm   35 sec   (4270 perm/sec)   p_kst 6.710667e-01   p_cons 7.446667e-03   p_joint 7.673333e-03

Joint ci ratio: 1.117080e-01	ci left: 7.210661e-03	ci right 8.069825e-03	k: 1221	n:160000
Cons ci ratio: 1.133554e-01	ci left: 6.998025e-03	ci right 7.844972e-03	k: 1186	n:160000
KS ci ratio: 6.858274e-03	ci left: 6.689420e-01	ci right 6.735518e-01	k: 107400	n:160000
PSMD4   160000 perm   38 sec   (4199 perm/sec)   p_kst 6.712500e-01   p_cons 7.412500e-03   p_joint 7.631250e-03

Joint ci ratio: 1.079702e-01	ci left: 7.278503e-03	ci right 8.114888e-03	k: 1307	n:170000
Cons ci ratio: 1.094991e-01	ci left: 7.072457e-03	ci right 7.897414e-03	k: 1271	n:170000
KS ci ratio: 6.649737e-03	ci left: 6.692615e-01	ci right 6.737326e-01	k: 114155	n:170000
PSMD4   170000 perm   41 sec   (4130 perm/sec)   p_kst 6.715000e-01   p_cons 7.476471e-03   p_joint 7.688235e-03

Joint ci ratio: 1.051173e-01	ci left: 7.263480e-03	ci right 8.074719e-03	k: 1379	n:180000
Cons ci ratio: 1.066866e-01	ci left: 7.047102e-03	ci right 7.846662e-03	k: 1339	n:180000
KS ci ratio: 6.457746e-03	ci left: 6.696420e-01	ci right 6.739858e-01	k: 120927	n:180000
PSMD4   180000 perm   44 sec   (4063 perm/sec)   p_kst 6.718167e-01   p_cons 7.438889e-03   p_joint 7.661111e-03

Joint ci ratio: 1.029086e-01	ci left: 7.188751e-03	ci right 7.973753e-03	k: 1439	n:190000
Cons ci ratio: 1.044923e-01	ci left: 6.968264e-03	ci right 7.741618e-03	k: 1396	n:190000
KS ci ratio: 6.290699e-03	ci left: 6.693355e-01	ci right 6.735646e-01	k: 127576	n:190000
PSMD4   190000 perm   47 sec   (4001 perm/sec)   p_kst 6.714526e-01   p_cons 7.347368e-03   p_joint 7.573684e-03

Joint ci ratio: 9.986534e-02	ci left: 7.263044e-03	ci right 8.031329e-03	k: 1528	n:200000
Cons ci ratio: 1.013797e-01	ci left: 7.043666e-03	ci right 7.800716e-03	k: 1483	n:200000
KS ci ratio: 6.131453e-03	ci left: 6.693866e-01	ci right 6.735085e-01	k: 134290	n:200000
PSMD4   200000 perm   51 sec   (3940 perm/sec)   p_kst 6.714500e-01   p_cons 7.415000e-03   p_joint 7.640000e-03

Joint ci ratio: 9.728929e-02	ci left: 7.298041e-03	ci right 8.048978e-03	k: 1610	n:210000
Cons ci ratio: 9.871964e-02	ci left: 7.084324e-03	ci right 7.824607e-03	k: 1564	n:210000
KS ci ratio: 5.982556e-03	ci left: 6.695199e-01	ci right 6.735420e-01	k: 141022	n:210000
PSMD4   210000 perm   54 sec   (3881 perm/sec)   p_kst 6.715333e-01   p_cons 7.447619e-03   p_joint 7.666667e-03

Outputting figure to mutsig2_images.part000000000139/PSMD4.2_1174_210000_0.67153_0.0074476_0.0076667.png
                gene_name: PSMD4
               theta_stop: 0.099 
                    nperm: 210000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.0074 
      ci_cons_bounds_left: 0.0071 
     ci_cons_bounds_right: 0.0078 
                  p_joint: 0.0077 
     ci_joint_bounds_left: 0.0073 
    ci_joint_bounds_right: 0.0080 

Current progress: 98 percent done.
PSMF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.263640e-02	ci left: 4.481982e-01	ci right 4.678262e-01	k: 4580	n:10000
Cons ci ratio: 5.315188e-02	ci left: 3.428323e-01	ci right 3.616539e-01	k: 3522	n:10000
KS ci ratio: 6.214964e-02	ci left: 2.756709e-01	ci right 2.934548e-01	k: 2845	n:10000
PSMF1   10000 perm   1 sec   (6982 perm/sec)   p_kst 2.845000e-01   p_cons 3.522000e-01   p_joint 4.580000e-01

Outputting figure to mutsig2_images.part000000000139/PSMF1.2_844_10000_0.2845_0.3522_0.458.png
                gene_name: PSMF1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000139
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 139 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1712>
Subject: Job 8004461: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1712>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000140> was used as the working directory.
Started at Sun Nov 11 15:14:45 2012
Results reported at Sun Nov 11 15:23:06 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000140.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000140.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 140  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000140.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    540.27 sec.
    Max Memory :      4771 MB
    Max Swap   :      7054 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
140
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 140
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 140: processing genes 12576 - 12666
Calculating significance of each gene.
Using projection method.
12576	PSMG1	1
12577	PSMG2	1
12578	PSMG3	1
12579	PSORS1C1	2.319391e-01
12580	PSORS1C2	1
12581	PSPC1	8.604910e-01
12582	PSPH	1.229345e-01
12583	PSPN	1
12584	PSRC1	8.157316e-01
12585	PSTK	5.966374e-01
12586	PSTPIP1	2.478397e-01
12587	PSTPIP2	3.279389e-01
12588	PTAFR	1.772865e-01
12589	PTAR1	1
12590	PTBP1	1
12591	PTBP2	3.910050e-01
12592	PTCD1	2.598168e-01
12593	PTCD2	1
12594	PTCD3	4.949850e-01
12595	PTCH1	8.977443e-01
12596	PTCH2	8.687235e-01
12597	PTCHD1	1.526998e-01
12598	PTCHD2	9.940414e-01
12599	PTCHD3	1.387418e-01
12600	PTCRA	1
12601	PTDSS1	4.990821e-01
12602	PTDSS2	1
12603	PTEN	1.239692e-10
12604	PTER	1
12605	PTF1A	1
12606	PTGDR	2.104590e-01
12607	PTGDS	1
12608	PTGER2	4.132264e-01
12609	PTGER3	1.450371e-01
12610	PTGER4	4.148613e-01
12611	PTGES	3.071880e-01
12612	PTGES2	1
12613	PTGES3	1
12614	PTGFR	1.622765e-02
12615	PTGFRN	9.757851e-01
12616	PTGIR	4.412375e-01
12617	PTGIS	1
12618	PTGR1	4.836486e-01
12619	PTGR2	7.153694e-01
12620	PTGS1	7.992050e-01
12621	PTGS2	1
12622	PTH	1
12623	PTH1R	9.132836e-01
12624	PTH2	1
12625	PTH2R	5.729656e-02
12626	PTHLH	5.340783e-01
12627	PTK2	1
12628	PTK2B	1
12629	PTK6	5.773521e-01
12630	PTK7	1
12631	PTMA	1
12632	PTMS	1
12633	PTN	1
12634	PTOV1	2.697612e-01
12635	PTP4A1	1
12636	PTP4A2	1
12637	PTP4A3	1.293977e-01
12638	PTPDC1	8.588538e-01
12639	PTPLA	1
12640	PTPLAD1	1
12641	PTPLAD2	1
12642	PTPLB	1
12643	PTPMT1	1
12644	PTPN1	7.374430e-01
12645	PTPN11	3.333915e-01
12646	PTPN12	8.179232e-01
12647	PTPN13	5.573283e-01
12648	PTPN14	9.499717e-01
12649	PTPN18	8.644245e-03
12650	PTPN2	1
12651	PTPN21	9.218292e-01
12652	PTPN22	5.257294e-01
12653	PTPN23	9.847052e-01
12654	PTPN3	4.655076e-01
12655	PTPN4	2.608442e-01
12656	PTPN5	8.932845e-01
12657	PTPN6	1
12658	PTPN7	6.152151e-01
12659	PTPN9	7.348909e-01
12660	PTPRA	1
12661	PTPRB	6.181098e-01
12662	PTPRC	1
12663	PTPRCAP	3.063031e-01
12664	PTPRD	5.908427e-01
12665	PTPRE	7.761696e-01
12666	PTPRF	1
Done

Running MutSig 2:
Scatter job 140: processing genes 12576 - 12666
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
PTPRB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.215078e-02	ci left: 9.066881e-01	ci right 9.178704e-01	k: 9124	n:10000
Cons ci ratio: 3.518897e-02	ci left: 5.438924e-01	ci right 5.634763e-01	k: 5537	n:10000
KS ci ratio: 1.582507e-02	ci left: 8.529423e-01	ci right 8.666473e-01	k: 8599	n:10000
PTPRB   10000 perm   3 sec   (3510 perm/sec)   p_kst 8.599000e-01   p_cons 5.537000e-01   p_joint 9.124000e-01

Outputting figure to mutsig2_images.part000000000140/PTPRB.17_6842_10000_0.8599_0.5537_0.9124.png
                gene_name: PTPRB
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 2 percent done.
PTEN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.485455e-01	ci left: 6.024541e-02	ci right 7.000980e-02	k: 650	n:10000
Cons ci ratio: 5.173814e-02	ci left: 3.551569e-01	ci right 3.741220e-01	k: 3646	n:10000
KS ci ratio: 2.019685e-01	ci left: 3.262466e-02	ci right 4.004861e-02	k: 362	n:10000
PTEN   10000 perm   2 sec   (4656 perm/sec)   p_kst 3.620000e-02   p_cons 3.646000e-01   p_joint 6.500000e-02

Joint ci ratio: 1.250922e-01	ci left: 4.386539e-02	ci right 4.976727e-02	k: 935	n:20000
Cons ci ratio: 3.635250e-02	ci left: 3.609125e-01	ci right 3.743260e-01	k: 7352	n:20000
KS ci ratio: 1.424100e-01	ci left: 3.389529e-02	ci right 3.914057e-02	k: 729	n:20000
PTEN   20000 perm   5 sec   (4243 perm/sec)   p_kst 3.645000e-02   p_cons 3.676000e-01   p_joint 4.675000e-02

Joint ci ratio: 1.059974e-01	ci left: 4.128440e-02	ci right 4.593784e-02	k: 1307	n:30000
Cons ci ratio: 2.964658e-02	ci left: 3.627053e-01	ci right 3.736536e-01	k: 11045	n:30000
KS ci ratio: 1.167214e-01	ci left: 3.411469e-02	ci right 3.837573e-02	k: 1086	n:30000
PTEN   30000 perm   7 sec   (4076 perm/sec)   p_kst 3.620000e-02   p_cons 3.681667e-01   p_joint 4.356667e-02

Joint ci ratio: 7.486110e-02	ci left: 6.174349e-02	ci right 6.657002e-02	k: 2565	n:40000
Cons ci ratio: 2.561545e-02	ci left: 3.645177e-01	ci right 3.740013e-01	k: 14770	n:40000
KS ci ratio: 9.995650e-02	ci left: 3.517134e-02	ci right 3.889625e-02	k: 1480	n:40000
PTEN   40000 perm   10 sec   (3970 perm/sec)   p_kst 3.700000e-02   p_cons 3.692500e-01   p_joint 6.412500e-02

Outputting figure to mutsig2_images.part000000000140/PTEN.16_1248_40000_0.037_0.36925_0.064125.png
                gene_name: PTEN
               theta_stop: 0.100 
                    nperm: 40000 
                     p_ks: 0.037 
        ci_ks_bounds_left: 0.035 
       ci_ks_bounds_right: 0.039 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.064 
     ci_joint_bounds_left: 0.062 
    ci_joint_bounds_right: 0.067 

Current progress: 5 percent done.
PTPRD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.907576e-02	ci left: 2.965789e-01	ci right 3.147345e-01	k: 3056	n:10000
Cons ci ratio: 1.290236e-01	ci left: 7.902317e-02	ci right 9.002028e-02	k: 844	n:10000
KS ci ratio: 2.277655e-02	ci left: 7.389648e-01	ci right 7.560908e-01	k: 7476	n:10000
PTPRD   10000 perm   3 sec   (3848 perm/sec)   p_kst 7.476000e-01   p_cons 8.440000e-02   p_joint 3.056000e-01

Joint ci ratio: 2.560199e-02	ci left: 5.326619e-01	ci right 5.465266e-01	k: 10792	n:20000
Cons ci ratio: 8.039080e-02	ci left: 1.019626e-01	ci right 1.105523e-01	k: 2124	n:20000
KS ci ratio: 1.781784e-02	ci left: 7.012412e-01	ci right 7.138985e-01	k: 14152	n:20000
PTPRD   20000 perm   6 sec   (3523 perm/sec)   p_kst 7.076000e-01   p_cons 1.062000e-01   p_joint 5.396000e-01

Outputting figure to mutsig2_images.part000000000140/PTPRD.15_5947_20000_0.7076_0.1062_0.5396.png
                gene_name: PTPRD
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 7 percent done.
PTPN13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.903611e-02	ci left: 3.802244e-01	ci right 3.994398e-01	k: 3898	n:10000
Cons ci ratio: 9.353182e-02	ci left: 1.423679e-01	ci right 1.564370e-01	k: 1493	n:10000
KS ci ratio: 2.743434e-02	ci left: 6.618937e-01	ci right 6.804065e-01	k: 6712	n:10000
PTPN13   10000 perm   3 sec   (3553 perm/sec)   p_kst 6.712000e-01   p_cons 1.493000e-01   p_joint 3.898000e-01

Outputting figure to mutsig2_images.part000000000140/PTPN13.9_7661_10000_0.6712_0.1493_0.3898.png
                gene_name: PTPN13
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 9 percent done.
PTCHD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.754394e-02	ci left: 3.949592e-01	ci right 4.142964e-01	k: 4046	n:10000
Cons ci ratio: 4.885068e-03	ci left: 9.822058e-01	ci right 9.871060e-01	k: 9848	n:10000
KS ci ratio: 6.623483e-02	ci left: 2.507315e-01	ci right 2.680089e-01	k: 2593	n:10000
PTCHD3   10000 perm   2 sec   (4941 perm/sec)   p_kst 2.593000e-01   p_cons 9.848000e-01   p_joint 4.046000e-01

Outputting figure to mutsig2_images.part000000000140/PTCHD3.8_2320_10000_0.2593_0.9848_0.4046.png
                gene_name: PTCHD3
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 12 percent done.
PTPRC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.925109e-02	ci left: 7.978066e-01	ci right 8.134149e-01	k: 8057	n:10000
Cons ci ratio: 5.711691e-02	ci left: 3.109600e-01	ci right 3.293449e-01	k: 3201	n:10000
KS ci ratio: 2.162371e-02	ci left: 7.582837e-01	ci right 7.749607e-01	k: 7667	n:10000
PTPRC   10000 perm   2 sec   (4864 perm/sec)   p_kst 7.667000e-01   p_cons 3.201000e-01   p_joint 8.057000e-01

Outputting figure to mutsig2_images.part000000000140/PTPRC.7_4054_10000_0.7667_0.3201_0.8057.png
                gene_name: PTPRC
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 14 percent done.
PTCHD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.087703e-02	ci left: 2.840908e-01	ci right 3.020299e-01	k: 2930	n:10000
Cons ci ratio: 1.898640e-02	ci left: 8.021712e-01	ci right 8.176478e-01	k: 8100	n:10000
KS ci ratio: 1.048147e-01	ci left: 1.162323e-01	ci right 1.291883e-01	k: 1226	n:10000
PTCHD1   10000 perm   2 sec   (5401 perm/sec)   p_kst 1.226000e-01   p_cons 8.100000e-01   p_joint 2.930000e-01

Joint ci ratio: 4.905622e-02	ci left: 2.360275e-01	ci right 2.479476e-01	k: 4839	n:20000
Cons ci ratio: 1.336399e-02	ci left: 8.059084e-01	ci right 8.168010e-01	k: 16228	n:20000
KS ci ratio: 7.432380e-02	ci left: 1.175435e-01	ci right 1.266667e-01	k: 2441	n:20000
PTCHD1   20000 perm   4 sec   (4840 perm/sec)   p_kst 1.220500e-01   p_cons 8.114000e-01   p_joint 2.419500e-01

Outputting figure to mutsig2_images.part000000000140/PTCHD1.6_2679_20000_0.12205_0.8114_0.24195.png
                gene_name: PTCHD1
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 16 percent done.
PTK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.394775e-02	ci left: 4.332319e-01	ci right 4.528014e-01	k: 4430	n:10000
KS ci ratio: 1.058573e-02	ci left: 9.269922e-01	ci right 9.369544e-01	k: 9321	n:10000
PTK2   10000 perm   2 sec   (5108 perm/sec)   p_kst 9.321000e-01   p_cons 4.430000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000140/PTK2.6_3349_10000_0.9321_0.443_1.png
                gene_name: PTK2
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 19 percent done.
PTPN18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.080322e-02	ci left: 6.085946e-01	ci right 6.277365e-01	k: 6182	n:10000
Cons ci ratio: 4.465815e-02	ci left: 4.253532e-01	ci right 4.448846e-01	k: 4351	n:10000
KS ci ratio: 2.259555e-02	ci left: 7.419977e-01	ci right 7.590561e-01	k: 7506	n:10000
PTPN18   10000 perm   2 sec   (5392 perm/sec)   p_kst 7.506000e-01   p_cons 4.351000e-01   p_joint 6.182000e-01

Outputting figure to mutsig2_images.part000000000140/PTPN18.6_1443_10000_0.7506_0.4351_0.6182.png
                gene_name: PTPN18
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 21 percent done.
PTPN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.553281e-02	ci left: 6.930285e-01	ci right 7.110537e-01	k: 7021	n:10000
Cons ci ratio: 1.593649e-02	ci left: 8.512085e-01	ci right 8.649822e-01	k: 8582	n:10000
KS ci ratio: 4.853484e-02	ci left: 3.851018e-01	ci right 4.043596e-01	k: 3947	n:10000
PTPN4   10000 perm   2 sec   (5020 perm/sec)   p_kst 3.947000e-01   p_cons 8.582000e-01   p_joint 7.021000e-01

Outputting figure to mutsig2_images.part000000000140/PTPN4.6_2885_10000_0.3947_0.8582_0.7021.png
                gene_name: PTPN4
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 23 percent done.
PTPRF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.980258e-02	ci left: 7.886762e-01	ci right 8.045507e-01	k: 7967	n:10000
Cons ci ratio: 3.847961e-02	ci left: 4.993504e-01	ci right 5.190443e-01	k: 5092	n:10000
KS ci ratio: 2.921266e-02	ci left: 6.334184e-01	ci right 6.522983e-01	k: 6429	n:10000
PTPRF   10000 perm   2 sec   (4366 perm/sec)   p_kst 6.429000e-01   p_cons 5.092000e-01   p_joint 7.967000e-01

Outputting figure to mutsig2_images.part000000000140/PTPRF.6_5852_10000_0.6429_0.5092_0.7967.png
                gene_name: PTPRF
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 26 percent done.
PTCD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.745367e-02	ci left: 5.128549e-01	ci right 5.325319e-01	k: 5227	n:10000
Cons ci ratio: 3.292450e-02	ci left: 5.765733e-01	ci right 5.959764e-01	k: 5863	n:10000
KS ci ratio: 4.777161e-02	ci left: 3.926687e-01	ci right 4.119882e-01	k: 4023	n:10000
PTCD1   10000 perm   2 sec   (5158 perm/sec)   p_kst 4.023000e-01   p_cons 5.863000e-01   p_joint 5.227000e-01

Outputting figure to mutsig2_images.part000000000140/PTCD1.5_2131_10000_0.4023_0.5863_0.5227.png
                gene_name: PTCD1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 28 percent done.
PTCH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.674103e-02	ci left: 6.731734e-01	ci right 6.915203e-01	k: 6824	n:10000
Cons ci ratio: 1.301240e-02	ci left: 8.947738e-01	ci right 9.065916e-01	k: 9008	n:10000
KS ci ratio: 3.566129e-02	ci left: 5.372812e-01	ci right 5.568913e-01	k: 5471	n:10000
PTCH2   10000 perm   2 sec   (4997 perm/sec)   p_kst 5.471000e-01   p_cons 9.008000e-01   p_joint 6.824000e-01

Outputting figure to mutsig2_images.part000000000140/PTCH2.5_3720_10000_0.5471_0.9008_0.6824.png
                gene_name: PTCH2
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 30 percent done.
PTCHD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.556815e-02	ci left: 8.569213e-01	ci right 8.704660e-01	k: 8638	n:10000
Cons ci ratio: 6.773271e-02	ci left: 2.423276e-01	ci right 2.594177e-01	k: 2508	n:10000
KS ci ratio: 6.066330e-03	ci left: 9.735507e-01	ci right 9.795672e-01	k: 9767	n:10000
PTCHD2   10000 perm   2 sec   (4667 perm/sec)   p_kst 9.767000e-01   p_cons 2.508000e-01   p_joint 8.638000e-01

Outputting figure to mutsig2_images.part000000000140/PTCHD2.5_4259_10000_0.9767_0.2508_0.8638.png
                gene_name: PTCHD2
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 33 percent done.
PTGDR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.242968e-02	ci left: 9.028849e-01	ci right 9.142758e-01	k: 9087	n:10000
KS ci ratio: 1.994303e-02	ci left: 7.863438e-01	ci right 8.022844e-01	k: 7944	n:10000
PTGDR   10000 perm   2 sec   (6212 perm/sec)   p_kst 7.944000e-01   p_cons 9.087000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000140/PTGDR.5_1088_10000_0.7944_0.9087_1.png
                gene_name: PTGDR
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 35 percent done.
PTGER3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.340422e-02	ci left: 7.284549e-01	ci right 7.458068e-01	k: 7372	n:10000
Cons ci ratio: 1.270466e-02	ci left: 8.990845e-01	ci right 9.106784e-01	k: 9050	n:10000
KS ci ratio: 2.606481e-02	ci left: 6.842576e-01	ci right 7.024297e-01	k: 6934	n:10000
PTGER3   10000 perm   2 sec   (5728 perm/sec)   p_kst 6.934000e-01   p_cons 9.050000e-01   p_joint 7.372000e-01

Outputting figure to mutsig2_images.part000000000140/PTGER3.5_1492_10000_0.6934_0.905_0.7372.png
                gene_name: PTGER3
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 37 percent done.
PTGFR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.924358e-03	ci left: 9.463777e-01	ci right 9.549573e-01	k: 9508	n:10000
KS ci ratio: 1.426541e-02	ci left: 8.766408e-01	ci right 8.893352e-01	k: 8831	n:10000
PTGFR   10000 perm   2 sec   (6147 perm/sec)   p_kst 8.831000e-01   p_cons 9.508000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000140/PTGFR.5_1163_10000_0.8831_0.9508_1.png
                gene_name: PTGFR
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 40 percent done.
PTH2R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.249902e-02	ci left: 7.436154e-01	ci right 7.606374e-01	k: 7522	n:10000
Cons ci ratio: 3.608058e-02	ci left: 5.314728e-01	ci right 5.511031e-01	k: 5413	n:10000
KS ci ratio: 2.553891e-02	ci left: 6.929276e-01	ci right 7.109546e-01	k: 7020	n:10000
PTH2R   10000 perm   2 sec   (5643 perm/sec)   p_kst 7.020000e-01   p_cons 5.413000e-01   p_joint 7.522000e-01

Outputting figure to mutsig2_images.part000000000140/PTH2R.5_1705_10000_0.702_0.5413_0.7522.png
                gene_name: PTH2R
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 42 percent done.
PTCH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.383558e-02	ci left: 1.718257e-01	ci right 1.869615e-01	k: 1793	n:10000
Cons ci ratio: 1.447756e-01	ci left: 6.333545e-02	ci right 7.331780e-02	k: 682	n:10000
KS ci ratio: 5.289665e-02	ci left: 3.450184e-01	ci right 3.638665e-01	k: 3544	n:10000
PTCH1   10000 perm   2 sec   (4981 perm/sec)   p_kst 3.544000e-01   p_cons 6.820000e-02   p_joint 1.793000e-01

Joint ci ratio: 6.604713e-02	ci left: 1.447816e-01	ci right 1.547205e-01	k: 2994	n:20000
Cons ci ratio: 9.841040e-02	ci left: 6.987174e-02	ci right 7.715284e-02	k: 1469	n:20000
KS ci ratio: 3.640337e-02	ci left: 3.602651e-01	ci right 3.736736e-01	k: 7339	n:20000
PTCH1   20000 perm   4 sec   (4510 perm/sec)   p_kst 3.669500e-01   p_cons 7.345000e-02   p_joint 1.497000e-01

Outputting figure to mutsig2_images.part000000000140/PTCH1.4_4645_20000_0.36695_0.07345_0.1497.png
                gene_name: PTCH1
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.073 
      ci_cons_bounds_left: 0.070 
     ci_cons_bounds_right: 0.077 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 44 percent done.
PTDSS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.055197e-01	ci left: 3.148396e-02	ci right 3.879009e-02	k: 350	n:10000
Cons ci ratio: 5.906185e-02	ci left: 2.966780e-01	ci right 3.148353e-01	k: 3057	n:10000
KS ci ratio: 4.420964e-01	ci left: 6.081359e-03	ci right 9.614411e-03	k: 77	n:10000
PTDSS1   10000 perm   2 sec   (6170 perm/sec)   p_kst 7.700000e-03   p_cons 3.057000e-01   p_joint 3.500000e-02

Joint ci ratio: 2.815335e-01	ci left: 8.248793e-03	ci right 1.099660e-02	k: 191	n:20000
Cons ci ratio: 4.181732e-02	ci left: 2.988217e-01	ci right 3.116350e-01	k: 6104	n:20000
KS ci ratio: 3.086535e-01	ci left: 6.766163e-03	ci right 9.280034e-03	k: 159	n:20000
PTDSS1   20000 perm   4 sec   (5518 perm/sec)   p_kst 7.950000e-03   p_cons 3.052000e-01   p_joint 9.550000e-03

Joint ci ratio: 1.264617e-01	ci left: 2.906762e-02	ci right 3.302389e-02	k: 930	n:30000
Cons ci ratio: 3.387065e-02	ci left: 3.034083e-01	ci right 3.138955e-01	k: 9259	n:30000
KS ci ratio: 2.488992e-01	ci left: 7.179429e-03	ci right 9.250843e-03	k: 245	n:30000
PTDSS1   30000 perm   6 sec   (5267 perm/sec)   p_kst 8.166667e-03   p_cons 3.086333e-01   p_joint 3.100000e-02

Joint ci ratio: 1.343144e-01	ci left: 1.944797e-02	ci right 2.227219e-02	k: 833	n:40000
Cons ci ratio: 2.922781e-02	ci left: 3.056434e-01	ci right 3.147342e-01	k: 12407	n:40000
KS ci ratio: 2.199929e-01	ci left: 7.008526e-03	ci right 8.764048e-03	k: 314	n:40000
PTDSS1   40000 perm   8 sec   (5096 perm/sec)   p_kst 7.850000e-03   p_cons 3.101750e-01   p_joint 2.082500e-02

Joint ci ratio: 1.580059e-01	ci left: 1.119852e-02	ci right 1.313874e-02	k: 607	n:50000
Cons ci ratio: 2.624390e-02	ci left: 3.044727e-01	ci right 3.125895e-01	k: 15426	n:50000
KS ci ratio: 1.979753e-01	ci left: 7.009552e-03	ci right 8.568410e-03	k: 388	n:50000
PTDSS1   50000 perm   10 sec   (4950 perm/sec)   p_kst 7.760000e-03   p_cons 3.085200e-01   p_joint 1.214000e-02

Joint ci ratio: 1.458256e-01	ci left: 1.103162e-02	ci right 1.278274e-02	k: 713	n:60000
Cons ci ratio: 2.460059e-02	ci left: 2.936775e-01	ci right 3.010088e-01	k: 17840	n:60000
KS ci ratio: 1.774602e-01	ci left: 7.350527e-03	ci right 8.797663e-03	k: 483	n:60000
PTDSS1   60000 perm   12 sec   (4824 perm/sec)   p_kst 8.050000e-03   p_cons 2.973333e-01   p_joint 1.188333e-02

Joint ci ratio: 1.483849e-01	ci left: 9.138520e-03	ci right 1.061682e-02	k: 690	n:70000
Cons ci ratio: 2.279013e-02	ci left: 2.936875e-01	ci right 3.004721e-01	k: 20795	n:70000
KS ci ratio: 1.639553e-01	ci left: 7.435595e-03	ci right 8.777089e-03	k: 566	n:70000
PTDSS1   70000 perm   15 sec   (4657 perm/sec)   p_kst 8.085714e-03   p_cons 2.970714e-01   p_joint 9.857143e-03

Joint ci ratio: 1.161512e-01	ci left: 1.322154e-02	ci right 1.486398e-02	k: 1122	n:80000
Cons ci ratio: 2.130665e-02	ci left: 2.941339e-01	ci right 3.004808e-01	k: 23784	n:80000
KS ci ratio: 1.519541e-01	ci left: 7.622803e-03	ci right 8.888248e-03	k: 659	n:80000
PTDSS1   80000 perm   18 sec   (4551 perm/sec)   p_kst 8.237500e-03   p_cons 2.973000e-01   p_joint 1.402500e-02

Joint ci ratio: 1.107771e-01	ci left: 1.296152e-02	ci right 1.449228e-02	k: 1234	n:90000
Cons ci ratio: 2.011866e-02	ci left: 2.936834e-01	ci right 2.996630e-01	k: 26700	n:90000
KS ci ratio: 1.433125e-01	ci left: 7.653307e-03	ci right 8.845381e-03	k: 741	n:90000
PTDSS1   90000 perm   20 sec   (4462 perm/sec)   p_kst 8.233333e-03   p_cons 2.966667e-01   p_joint 1.371111e-02

Joint ci ratio: 1.204524e-01	ci left: 9.848366e-03	ci right 1.112027e-02	k: 1047	n:100000
Cons ci ratio: 1.890477e-02	ci left: 2.978287e-01	ci right 3.035228e-01	k: 30067	n:100000
KS ci ratio: 1.364972e-01	ci left: 7.621375e-03	ci right 8.747432e-03	k: 817	n:100000
PTDSS1   100000 perm   23 sec   (4326 perm/sec)   p_kst 8.170000e-03   p_cons 3.006700e-01   p_joint 1.047000e-02

Joint ci ratio: 9.793850e-02	ci left: 1.365103e-02	ci right 1.506565e-02	k: 1578	n:110000
Cons ci ratio: 1.801479e-02	ci left: 2.981994e-01	ci right 3.036293e-01	k: 33100	n:110000
KS ci ratio: 1.263626e-01	ci left: 8.124414e-03	ci right 9.228998e-03	k: 953	n:110000
PTDSS1   110000 perm   26 sec   (4256 perm/sec)   p_kst 8.663636e-03   p_cons 3.009091e-01   p_joint 1.434545e-02

Joint ci ratio: 9.551527e-02	ci left: 1.318010e-02	ci right 1.451022e-02	k: 1660	n:120000
Cons ci ratio: 1.725475e-02	ci left: 2.981477e-01	ci right 3.033452e-01	k: 36089	n:120000
KS ci ratio: 1.211432e-01	ci left: 8.125714e-03	ci right 9.181570e-03	k: 1037	n:120000
PTDSS1   120000 perm   29 sec   (4188 perm/sec)   p_kst 8.641667e-03   p_cons 3.007417e-01   p_joint 1.383333e-02

Joint ci ratio: 9.916680e-02	ci left: 1.128759e-02	ci right 1.247279e-02	k: 1543	n:130000
Cons ci ratio: 1.657464e-02	ci left: 2.983307e-01	ci right 3.033244e-01	k: 39107	n:130000
KS ci ratio: 1.165738e-01	ci left: 8.120140e-03	ci right 9.132730e-03	k: 1120	n:130000
PTDSS1   130000 perm   32 sec   (4116 perm/sec)   p_kst 8.615385e-03   p_cons 3.008231e-01   p_joint 1.186923e-02

Joint ci ratio: 1.030941e-01	ci left: 9.694183e-03	ci right 1.075482e-02	k: 1430	n:140000
Cons ci ratio: 1.594798e-02	ci left: 2.990468e-01	ci right 3.038614e-01	k: 42203	n:140000
KS ci ratio: 1.120170e-01	ci left: 8.185443e-03	ci right 9.163641e-03	k: 1213	n:140000
PTDSS1   140000 perm   34 sec   (4060 perm/sec)   p_kst 8.664286e-03   p_cons 3.014500e-01   p_joint 1.021429e-02

Joint ci ratio: 1.014259e-01	ci left: 9.359637e-03	ci right 1.036611e-02	k: 1478	n:150000
Cons ci ratio: 1.541052e-02	ci left: 2.990385e-01	ci right 3.036892e-01	k: 45204	n:150000
KS ci ratio: 1.080811e-01	ci left: 8.223242e-03	ci right 9.169229e-03	k: 1303	n:150000
PTDSS1   150000 perm   37 sec   (4005 perm/sec)   p_kst 8.686667e-03   p_cons 3.013600e-01   p_joint 9.853333e-03

Joint ci ratio: 8.925262e-02	ci left: 1.138052e-02	ci right 1.244978e-02	k: 1905	n:160000
Cons ci ratio: 1.492863e-02	ci left: 2.989026e-01	ci right 3.034046e-01	k: 48184	n:160000
KS ci ratio: 1.042692e-01	ci left: 8.299459e-03	ci right 9.218475e-03	k: 1400	n:160000
PTDSS1   160000 perm   41 sec   (3949 perm/sec)   p_kst 8.750000e-03   p_cons 3.011500e-01   p_joint 1.190625e-02

Joint ci ratio: 8.798621e-02	ci left: 1.103310e-02	ci right 1.205425e-02	k: 1961	n:170000
Cons ci ratio: 1.447452e-02	ci left: 2.992133e-01	ci right 3.035817e-01	k: 51237	n:170000
KS ci ratio: 1.005298e-01	ci left: 8.418844e-03	ci right 9.315673e-03	k: 1506	n:170000
PTDSS1   170000 perm   44 sec   (3895 perm/sec)   p_kst 8.858824e-03   p_cons 3.013941e-01   p_joint 1.153529e-02

Joint ci ratio: 8.651153e-02	ci left: 1.078963e-02	ci right 1.177065e-02	k: 2029	n:180000
Cons ci ratio: 1.379246e-02	ci left: 3.076142e-01	ci right 3.118919e-01	k: 55755	n:180000
KS ci ratio: 9.796556e-02	ci left: 8.384535e-03	ci right 9.253617e-03	k: 1586	n:180000
PTDSS1   180000 perm   47 sec   (3842 perm/sec)   p_kst 8.811111e-03   p_cons 3.097500e-01   p_joint 1.127222e-02

Outputting figure to mutsig2_images.part000000000140/PTDSS1.4_1474_180000_0.0088111_0.30975_0.011272.png
                gene_name: PTDSS1
               theta_stop: 0.098 
                    nperm: 180000 
                     p_ks: 0.0088 
        ci_ks_bounds_left: 0.0084 
       ci_ks_bounds_right: 0.0093 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.011 
     ci_joint_bounds_left: 0.011 
    ci_joint_bounds_right: 0.012 

Current progress: 47 percent done.
PTPN14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.499077e-02	ci left: 7.020050e-01	ci right 7.198720e-01	k: 7110	n:10000
Cons ci ratio: 2.754627e-02	ci left: 6.600814e-01	ci right 6.786198e-01	k: 6694	n:10000
KS ci ratio: 4.221808e-02	ci left: 4.530892e-01	ci right 4.727324e-01	k: 4629	n:10000
PTPN14   10000 perm   2 sec   (5067 perm/sec)   p_kst 4.629000e-01   p_cons 6.694000e-01   p_joint 7.110000e-01

Outputting figure to mutsig2_images.part000000000140/PTPN14.4_3636_10000_0.4629_0.6694_0.711.png
                gene_name: PTPN14
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 49 percent done.
PTPN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.659627e-02	ci left: 3.149289e-01	ci right 3.333736e-01	k: 3241	n:10000
Cons ci ratio: 1.092784e-01	ci left: 1.077365e-01	ci right 1.202894e-01	k: 1139	n:10000
KS ci ratio: 3.379388e-02	ci left: 5.638367e-01	ci right 5.833204e-01	k: 5736	n:10000
PTPN3   10000 perm   2 sec   (5246 perm/sec)   p_kst 5.736000e-01   p_cons 1.139000e-01   p_joint 3.241000e-01

Joint ci ratio: 4.415804e-02	ci left: 2.763667e-01	ci right 2.888965e-01	k: 5652	n:20000
Cons ci ratio: 7.657341e-02	ci left: 1.113964e-01	ci right 1.203156e-01	k: 2316	n:20000
KS ci ratio: 2.284128e-02	ci left: 5.887097e-01	ci right 6.023625e-01	k: 11911	n:20000
PTPN3   20000 perm   4 sec   (4748 perm/sec)   p_kst 5.955500e-01   p_cons 1.158000e-01   p_joint 2.826000e-01

Outputting figure to mutsig2_images.part000000000140/PTPN3.4_2842_20000_0.59555_0.1158_0.2826.png
                gene_name: PTPN3
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 51 percent done.
PTAFR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.777680e-02	ci left: 6.563567e-01	ci right 6.749467e-01	k: 6657	n:10000
Cons ci ratio: 5.929916e-02	ci left: 2.949926e-01	ci right 3.131216e-01	k: 3040	n:10000
KS ci ratio: 1.567378e-02	ci left: 8.552887e-01	ci right 8.688996e-01	k: 8622	n:10000
PTAFR   10000 perm   2 sec   (6487 perm/sec)   p_kst 8.622000e-01   p_cons 3.040000e-01   p_joint 6.657000e-01

Outputting figure to mutsig2_images.part000000000140/PTAFR.3_1033_10000_0.8622_0.304_0.6657.png
                gene_name: PTAFR
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.67 

Current progress: 53 percent done.
PTBP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.633221e-02	ci left: 4.074111e-01	ci right 4.268372e-01	k: 4171	n:10000
Cons ci ratio: 1.198728e-01	ci left: 9.078082e-02	ci right 1.024554e-01	k: 965	n:10000
KS ci ratio: 5.885386e-02	ci left: 2.981652e-01	ci right 3.163472e-01	k: 3072	n:10000
PTBP2   10000 perm   2 sec   (5958 perm/sec)   p_kst 3.072000e-01   p_cons 9.650000e-02   p_joint 4.171000e-01

Joint ci ratio: 3.400512e-02	ci left: 3.923530e-01	ci right 4.059764e-01	k: 7983	n:20000
Cons ci ratio: 8.510625e-02	ci left: 9.180406e-02	ci right 1.000139e-01	k: 1917	n:20000
KS ci ratio: 4.227525e-02	ci left: 2.942497e-01	ci right 3.070083e-01	k: 6012	n:20000
PTBP2   20000 perm   4 sec   (5348 perm/sec)   p_kst 3.006000e-01   p_cons 9.585000e-02   p_joint 3.991500e-01

Outputting figure to mutsig2_images.part000000000140/PTBP2.3_1652_20000_0.3006_0.09585_0.39915.png
                gene_name: PTBP2
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.096 
      ci_cons_bounds_left: 0.092 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 56 percent done.
PTCD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.464158e-02	ci left: 1.690728e-01	ci right 1.841161e-01	k: 1765	n:10000
Cons ci ratio: 2.292716e-01	ci left: 2.513779e-02	ci right 3.174074e-02	k: 283	n:10000
KS ci ratio: 5.826473e-02	ci left: 3.024292e-01	ci right 3.206807e-01	k: 3115	n:10000
PTCD3   10000 perm   2 sec   (5941 perm/sec)   p_kst 3.115000e-01   p_cons 2.830000e-02   p_joint 1.765000e-01

Joint ci ratio: 8.186402e-02	ci left: 9.862400e-02	ci right 1.070919e-01	k: 2056	n:20000
Cons ci ratio: 1.569380e-01	ci left: 2.787170e-02	ci right 3.266616e-02	k: 604	n:20000
KS ci ratio: 4.096063e-02	ci left: 3.076199e-01	ci right 3.205342e-01	k: 6281	n:20000
PTCD3   20000 perm   4 sec   (5294 perm/sec)   p_kst 3.140500e-01   p_cons 3.020000e-02   p_joint 1.028000e-01

Joint ci ratio: 9.112414e-02	ci left: 5.544646e-02	ci right 6.077285e-02	k: 1742	n:30000
Cons ci ratio: 1.333438e-01	ci left: 2.613009e-02	ci right 2.989539e-02	k: 839	n:30000
KS ci ratio: 3.346753e-02	ci left: 3.085174e-01	ci right 3.190520e-01	k: 9413	n:30000
PTCD3   30000 perm   6 sec   (5053 perm/sec)   p_kst 3.137667e-01   p_cons 2.796667e-02   p_joint 5.806667e-02

Joint ci ratio: 7.792418e-02	ci left: 5.717677e-02	ci right 6.183743e-02	k: 2379	n:40000
Cons ci ratio: 1.136146e-01	ci left: 2.725574e-02	ci right 3.056312e-02	k: 1155	n:40000
KS ci ratio: 2.892999e-02	ci left: 3.100256e-01	ci right 3.191513e-01	k: 12583	n:40000
PTCD3   40000 perm   8 sec   (4892 perm/sec)   p_kst 3.145750e-01   p_cons 2.887500e-02   p_joint 5.947500e-02

Joint ci ratio: 7.628579e-02	ci left: 4.824329e-02	ci right 5.208915e-02	k: 2507	n:50000
Cons ci ratio: 1.015117e-01	ci left: 2.748801e-02	ci right 3.044701e-02	k: 1447	n:50000
KS ci ratio: 2.590100e-02	ci left: 3.100922e-01	ci right 3.182493e-01	k: 15708	n:50000
PTCD3   50000 perm   10 sec   (4767 perm/sec)   p_kst 3.141600e-01   p_cons 2.894000e-02   p_joint 5.014000e-02

Joint ci ratio: 7.304561e-02	ci left: 4.412457e-02	ci right 4.748621e-02	k: 2747	n:60000
Cons ci ratio: 9.354691e-02	ci left: 2.710165e-02	ci right 2.977756e-02	k: 1705	n:60000
KS ci ratio: 2.364226e-02	ci left: 3.104864e-01	ci right 3.179315e-01	k: 18852	n:60000
PTCD3   60000 perm   13 sec   (4660 perm/sec)   p_kst 3.142000e-01   p_cons 2.841667e-02   p_joint 4.578333e-02

Outputting figure to mutsig2_images.part000000000140/PTCD3.3_2166_60000_0.3142_0.028417_0.045783.png
                gene_name: PTCD3
               theta_stop: 0.094 
                    nperm: 60000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.028 
      ci_cons_bounds_left: 0.027 
     ci_cons_bounds_right: 0.030 
                  p_joint: 0.046 
     ci_joint_bounds_left: 0.044 
    ci_joint_bounds_right: 0.047 

Current progress: 58 percent done.
PTPN11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.421708e-02	ci left: 5.577214e-01	ci right 5.772393e-01	k: 5675	n:10000
KS ci ratio: 1.624928e-02	ci left: 8.463146e-01	ci right 8.602789e-01	k: 8534	n:10000
PTPN11   10000 perm   2 sec   (5952 perm/sec)   p_kst 8.534000e-01   p_cons 5.675000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000140/PTPN11.3_1842_10000_0.8534_0.5675_1.png
                gene_name: PTPN11
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 60 percent done.
PTPN22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.396556e-02	ci left: 4.330324e-01	ci right 4.526010e-01	k: 4428	n:10000
Cons ci ratio: 2.007111e-02	ci left: 7.842146e-01	ci right 8.002148e-01	k: 7923	n:10000
KS ci ratio: 9.484152e-02	ci left: 1.389371e-01	ci right 1.528699e-01	k: 1458	n:10000
PTPN22   10000 perm   2 sec   (5652 perm/sec)   p_kst 1.458000e-01   p_cons 7.923000e-01   p_joint 4.428000e-01

Outputting figure to mutsig2_images.part000000000140/PTPN22.3_2531_10000_0.1458_0.7923_0.4428.png
                gene_name: PTPN22
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 63 percent done.
PTPN9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.629514e-01	ci left: 5.022725e-02	ci right 5.923435e-02	k: 546	n:10000
Cons ci ratio: 2.638395e-02	ci left: 6.790170e-01	ci right 6.972732e-01	k: 6882	n:10000
KS ci ratio: 2.399155e-01	ci left: 2.287554e-02	ci right 2.920465e-02	k: 259	n:10000
PTPN9   10000 perm   2 sec   (6395 perm/sec)   p_kst 2.590000e-02   p_cons 6.882000e-01   p_joint 5.460000e-02

Joint ci ratio: 1.240530e-01	ci left: 4.459306e-02	ci right 5.053936e-02	k: 950	n:20000
Cons ci ratio: 1.894211e-02	ci left: 6.751429e-01	ci right 6.881043e-01	k: 13633	n:20000
KS ci ratio: 1.730984e-01	ci left: 2.283264e-02	ci right 2.720694e-02	k: 499	n:20000
PTPN9   20000 perm   4 sec   (5647 perm/sec)   p_kst 2.495000e-02   p_cons 6.816500e-01   p_joint 4.750000e-02

Joint ci ratio: 9.423476e-02	ci left: 5.195785e-02	ci right 5.712884e-02	k: 1635	n:30000
Cons ci ratio: 1.546693e-02	ci left: 6.763279e-01	ci right 6.869036e-01	k: 20449	n:30000
KS ci ratio: 1.440166e-01	ci left: 2.236198e-02	ci right 2.586435e-02	k: 722	n:30000
PTPN9   30000 perm   6 sec   (5315 perm/sec)   p_kst 2.406667e-02   p_cons 6.816333e-01   p_joint 5.450000e-02

Joint ci ratio: 1.038414e-01	ci left: 3.261093e-02	ci right 3.620707e-02	k: 1375	n:40000
Cons ci ratio: 1.347617e-02	ci left: 6.743995e-01	ci right 6.835745e-01	k: 27160	n:40000
KS ci ratio: 1.257285e-01	ci left: 2.223148e-02	ci right 2.523821e-02	k: 948	n:40000
PTPN9   40000 perm   8 sec   (5146 perm/sec)   p_kst 2.370000e-02   p_cons 6.790000e-01   p_joint 3.437500e-02

Joint ci ratio: 8.832580e-02	ci left: 3.622354e-02	ci right 3.959038e-02	k: 1894	n:50000
Cons ci ratio: 1.205072e-02	ci left: 6.749879e-01	ci right 6.831913e-01	k: 33955	n:50000
KS ci ratio: 1.121290e-01	ci left: 2.252056e-02	ci right 2.521511e-02	k: 1192	n:50000
PTPN9   50000 perm   10 sec   (5005 perm/sec)   p_kst 2.384000e-02   p_cons 6.791000e-01   p_joint 3.788000e-02

Joint ci ratio: 8.072246e-02	ci left: 3.628807e-02	ci right 3.935684e-02	k: 2268	n:60000
Cons ci ratio: 1.101509e-02	ci left: 6.747794e-01	ci right 6.822700e-01	k: 40712	n:60000
KS ci ratio: 1.017639e-01	ci left: 2.290387e-02	ci right 2.537579e-02	k: 1447	n:60000
PTPN9   60000 perm   12 sec   (4877 perm/sec)   p_kst 2.411667e-02   p_cons 6.785333e-01   p_joint 3.780000e-02

Joint ci ratio: 7.905985e-02	ci left: 3.258559e-02	ci right 3.528180e-02	k: 2374	n:70000
Cons ci ratio: 1.018676e-02	ci left: 6.755413e-01	ci right 6.824724e-01	k: 47531	n:70000
KS ci ratio: 9.465627e-02	ci left: 2.278115e-02	ci right 2.505855e-02	k: 1673	n:70000
PTPN9   70000 perm   15 sec   (4777 perm/sec)   p_kst 2.390000e-02   p_cons 6.790143e-01   p_joint 3.391429e-02

Outputting figure to mutsig2_images.part000000000140/PTPN9.3_1834_70000_0.0239_0.67901_0.033914.png
                gene_name: PTPN9
               theta_stop: 0.095 
                    nperm: 70000 
                     p_ks: 0.024 
        ci_ks_bounds_left: 0.023 
       ci_ks_bounds_right: 0.025 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.034 
     ci_joint_bounds_left: 0.033 
    ci_joint_bounds_right: 0.035 

Current progress: 65 percent done.
PSPH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.902339e-02	ci left: 8.015621e-01	ci right 8.170573e-01	k: 8094	n:10000
Cons ci ratio: 9.247904e-02	ci left: 1.452116e-01	ci right 1.593916e-01	k: 1522	n:10000
KS ci ratio: 3.981027e-02	ci left: 4.823548e-01	ci right 5.020497e-01	k: 4922	n:10000
PSPH   10000 perm   2 sec   (6095 perm/sec)   p_kst 4.922000e-01   p_cons 1.522000e-01   p_joint 8.094000e-01

Outputting figure to mutsig2_images.part000000000140/PSPH.2_698_10000_0.4922_0.1522_0.8094.png
                gene_name: PSPH
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 67 percent done.
PSTPIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.799618e-03	ci left: 9.580656e-01	ci right 9.656623e-01	k: 9620	n:10000
KS ci ratio: 9.892388e-03	ci left: 9.353730e-01	ci right 9.447687e-01	k: 9402	n:10000
PSTPIP1   10000 perm   2 sec   (6349 perm/sec)   p_kst 9.402000e-01   p_cons 9.620000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000140/PSTPIP1.2_1311_10000_0.9402_0.962_1.png
                gene_name: PSTPIP1
               theta_stop: 0.0099 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
PSTPIP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.855121e-01	ci left: 1.585693e-02	ci right 2.122875e-02	k: 184	n:10000
Cons ci ratio: 3.415481e-01	ci left: 1.078106e-02	ci right 1.530921e-02	k: 129	n:10000
KS ci ratio: 5.459159e-02	ci left: 3.308125e-01	ci right 3.494807e-01	k: 3401	n:10000
PSTPIP2   10000 perm   1 sec   (6734 perm/sec)   p_kst 3.401000e-01   p_cons 1.290000e-02   p_joint 1.840000e-02

Joint ci ratio: 2.935861e-02	ci left: 4.643115e-01	ci right 4.781968e-01	k: 9425	n:20000
Cons ci ratio: 2.257608e-01	ci left: 1.317232e-02	ci right 1.657086e-02	k: 296	n:20000
KS ci ratio: 3.919412e-02	ci left: 3.268163e-01	ci right 3.399322e-01	k: 6667	n:20000
PSTPIP2   20000 perm   3 sec   (5932 perm/sec)   p_kst 3.333500e-01   p_cons 1.480000e-02   p_joint 4.712500e-01

Joint ci ratio: 1.771017e-02	ci left: 6.146799e-01	ci right 6.256968e-01	k: 18606	n:30000
Cons ci ratio: 1.763658e-01	ci left: 1.476989e-02	ci right 1.765824e-02	k: 485	n:30000
KS ci ratio: 3.204992e-02	ci left: 3.273679e-01	ci right 3.380645e-01	k: 9981	n:30000
PSTPIP2   30000 perm   5 sec   (5628 perm/sec)   p_kst 3.327000e-01   p_cons 1.616667e-02   p_joint 6.202000e-01

Joint ci ratio: 8.709782e-03	ci left: 8.314266e-01	ci right 8.387247e-01	k: 33404	n:40000
Cons ci ratio: 1.497134e-01	ci left: 1.558726e-02	ci right 1.813357e-02	k: 673	n:40000
KS ci ratio: 2.760722e-02	ci left: 3.304738e-01	ci right 3.397501e-01	k: 13404	n:40000
PSTPIP2   40000 perm   7 sec   (5442 perm/sec)   p_kst 3.351000e-01   p_cons 1.682500e-02   p_joint 8.351000e-01

Joint ci ratio: 1.036267e-02	ci left: 7.371964e-01	ci right 7.448955e-01	k: 37053	n:50000
Cons ci ratio: 1.334657e-01	ci left: 1.582699e-02	ci right 1.810959e-02	k: 847	n:50000
KS ci ratio: 2.480528e-02	ci left: 3.289486e-01	ci right 3.372308e-01	k: 16654	n:50000
PSTPIP2   50000 perm   9 sec   (5294 perm/sec)   p_kst 3.330800e-01   p_cons 1.694000e-02   p_joint 7.410600e-01

Joint ci ratio: 1.695338e-02	ci left: 4.671824e-01	ci right 4.751871e-01	k: 28271	n:60000
Cons ci ratio: 1.206722e-01	ci left: 1.623943e-02	ci right 1.834097e-02	k: 1036	n:60000
KS ci ratio: 2.267208e-02	ci left: 3.287635e-01	ci right 3.363194e-01	k: 19952	n:60000
PSTPIP2   60000 perm   12 sec   (5166 perm/sec)   p_kst 3.325333e-01   p_cons 1.726667e-02   p_joint 4.711833e-01

Joint ci ratio: 1.567823e-02	ci left: 4.680389e-01	ci right 4.754492e-01	k: 33022	n:70000
Cons ci ratio: 1.121857e-01	ci left: 1.618030e-02	ci right 1.811717e-02	k: 1199	n:70000
KS ci ratio: 2.097778e-02	ci left: 3.293091e-01	ci right 3.363048e-01	k: 23296	n:70000
PSTPIP2   70000 perm   14 sec   (5053 perm/sec)   p_kst 3.328000e-01   p_cons 1.712857e-02   p_joint 4.717429e-01

Joint ci ratio: 1.466731e-02	ci left: 4.682231e-01	ci right 4.751539e-01	k: 37735	n:80000
Cons ci ratio: 1.046853e-01	ci left: 1.632252e-02	ci right 1.813773e-02	k: 1377	n:80000
KS ci ratio: 1.961692e-02	ci left: 3.296717e-01	ci right 3.362154e-01	k: 26635	n:80000
PSTPIP2   80000 perm   16 sec   (4945 perm/sec)   p_kst 3.329375e-01   p_cons 1.721250e-02   p_joint 4.716875e-01

Joint ci ratio: 1.374428e-02	ci left: 4.714662e-01	ci right 4.780021e-01	k: 42726	n:90000
Cons ci ratio: 9.844826e-02	ci left: 1.645818e-02	ci right 1.817313e-02	k: 1557	n:90000
KS ci ratio: 1.850218e-02	ci left: 3.296881e-01	ci right 3.358560e-01	k: 29949	n:90000
PSTPIP2   90000 perm   19 sec   (4845 perm/sec)   p_kst 3.327667e-01   p_cons 1.730000e-02   p_joint 4.747333e-01

Outputting figure to mutsig2_images.part000000000140/PSTPIP2.2_1061_90000_0.33277_0.0173_0.47473.png
                gene_name: PSTPIP2
               theta_stop: 0.098 
                    nperm: 90000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.017 
      ci_cons_bounds_left: 0.016 
     ci_cons_bounds_right: 0.018 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.48 

Current progress: 72 percent done.
PTGER2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.037980e-02	ci left: 4.752601e-01	ci right 4.949486e-01	k: 4851	n:10000
KS ci ratio: 1.369301e-02	ci left: 8.850350e-01	ci right 8.973360e-01	k: 8913	n:10000
PTGER2   10000 perm   2 sec   (6549 perm/sec)   p_kst 8.913000e-01   p_cons 4.851000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000140/PTGER2.2_1085_10000_0.8913_0.4851_1.png
                gene_name: PTGER2
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 74 percent done.
PTGER4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.849617e-02	ci left: 1.917059e-01	ci right 2.074695e-01	k: 1995	n:10000
KS ci ratio: 1.667539e-02	ci left: 8.395897e-01	ci right 8.538077e-01	k: 8468	n:10000
PTGER4   10000 perm   2 sec   (6494 perm/sec)   p_kst 8.468000e-01   p_cons 1.995000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000140/PTGER4.2_1475_10000_0.8468_0.1995_1.png
                gene_name: PTGER4
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
PTGS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.759750e-02	ci left: 8.248311e-01	ci right 8.395749e-01	k: 8323	n:10000
Cons ci ratio: 7.067756e-03	ci left: 9.649925e-01	ci right 9.719311e-01	k: 9686	n:10000
KS ci ratio: 4.962867e-02	ci left: 3.745520e-01	ci right 3.937155e-01	k: 3841	n:10000
PTGS1   10000 perm   2 sec   (6284 perm/sec)   p_kst 3.841000e-01   p_cons 9.686000e-01   p_joint 8.323000e-01

Outputting figure to mutsig2_images.part000000000140/PTGS1.2_1844_10000_0.3841_0.9686_0.8323.png
                gene_name: PTGS1
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 79 percent done.
PTK7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.428240e-03	ci left: 9.705838e-01	ci right 9.769362e-01	k: 9739	n:10000
Cons ci ratio: 2.930177e-02	ci left: 6.320107e-01	ci right 6.509069e-01	k: 6415	n:10000
KS ci ratio: 1.997964e-02	ci left: 7.857354e-01	ci right 8.016931e-01	k: 7938	n:10000
PTK7   10000 perm   2 sec   (5664 perm/sec)   p_kst 7.938000e-01   p_cons 6.415000e-01   p_joint 9.739000e-01

Outputting figure to mutsig2_images.part000000000140/PTK7.2_3293_10000_0.7938_0.6415_0.9739.png
                gene_name: PTK7
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 81 percent done.
PTOV1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.543456e-01	ci left: 2.024526e-02	ci right 2.623692e-02	k: 231	n:10000
Cons ci ratio: 2.595468e-01	ci left: 1.940213e-02	ci right 2.528070e-02	k: 222	n:10000
KS ci ratio: 2.809059e-01	ci left: 1.641496e-02	ci right 2.187026e-02	k: 190	n:10000
PTOV1   10000 perm   2 sec   (6563 perm/sec)   p_kst 1.900000e-02   p_cons 2.220000e-02   p_joint 2.310000e-02

Joint ci ratio: 1.318881e-01	ci left: 3.950386e-02	ci right 4.513019e-02	k: 845	n:20000
Cons ci ratio: 1.818703e-01	ci left: 2.063260e-02	ci right 2.480776e-02	k: 453	n:20000
KS ci ratio: 1.955271e-01	ci left: 1.777152e-02	ci right 2.166988e-02	k: 393	n:20000
PTOV1   20000 perm   3 sec   (5821 perm/sec)   p_kst 1.965000e-02   p_cons 2.265000e-02   p_joint 4.225000e-02

Joint ci ratio: 1.645439e-01	ci left: 1.703726e-02	ci right 2.012364e-02	k: 556	n:30000
Cons ci ratio: 1.452567e-01	ci left: 2.197614e-02	ci right 2.545027e-02	k: 710	n:30000
KS ci ratio: 1.573553e-01	ci left: 1.867001e-02	ci right 2.189050e-02	k: 607	n:30000
PTOV1   30000 perm   5 sec   (5527 perm/sec)   p_kst 2.023333e-02   p_cons 2.366667e-02   p_joint 1.853333e-02

Joint ci ratio: 6.709489e-02	ci left: 7.598089e-02	ci right 8.128047e-02	k: 3144	n:40000
Cons ci ratio: 1.234169e-01	ci left: 2.307982e-02	ci right 2.613973e-02	k: 983	n:40000
KS ci ratio: 1.353960e-01	ci left: 1.913373e-02	ci right 2.193649e-02	k: 820	n:40000
PTOV1   40000 perm   7 sec   (5346 perm/sec)   p_kst 2.050000e-02   p_cons 2.457500e-02   p_joint 7.860000e-02

Joint ci ratio: 6.381020e-02	ci left: 6.793622e-02	ci right 7.243384e-02	k: 3508	n:50000
Cons ci ratio: 1.054386e-01	ci left: 2.547990e-02	ci right 2.833539e-02	k: 1344	n:50000
KS ci ratio: 1.199293e-01	ci left: 1.966401e-02	ci right 2.219204e-02	k: 1045	n:50000
PTOV1   50000 perm   10 sec   (5205 perm/sec)   p_kst 2.090000e-02   p_cons 2.688000e-02   p_joint 7.016000e-02

Joint ci ratio: 6.180458e-02	ci left: 6.088808e-02	ci right 6.478767e-02	k: 3769	n:60000
Cons ci ratio: 9.637476e-02	ci left: 2.553864e-02	ci right 2.814074e-02	k: 1609	n:60000
KS ci ratio: 1.089582e-01	ci left: 1.996491e-02	ci right 2.228173e-02	k: 1266	n:60000
PTOV1   60000 perm   12 sec   (5079 perm/sec)   p_kst 2.110000e-02   p_cons 2.681667e-02   p_joint 6.281667e-02

Joint ci ratio: 1.105565e-01	ci left: 1.666659e-02	ci right 1.863082e-02	k: 1234	n:70000
Cons ci ratio: 8.985035e-02	ci left: 2.528075e-02	ci right 2.767300e-02	k: 1852	n:70000
KS ci ratio: 1.019795e-01	ci left: 1.961624e-02	ci right 2.173804e-02	k: 1446	n:70000
PTOV1   70000 perm   14 sec   (4965 perm/sec)   p_kst 2.065714e-02   p_cons 2.645714e-02   p_joint 1.762857e-02

Joint ci ratio: 1.042245e-01	ci left: 1.646866e-02	ci right 1.829158e-02	k: 1389	n:80000
Cons ci ratio: 8.391954e-02	ci left: 2.543468e-02	ci right 2.767483e-02	k: 2123	n:80000
KS ci ratio: 9.503337e-02	ci left: 1.983442e-02	ci right 2.182554e-02	k: 1665	n:80000
PTOV1   80000 perm   16 sec   (4861 perm/sec)   p_kst 2.081250e-02   p_cons 2.653750e-02   p_joint 1.736250e-02

Joint ci ratio: 9.816014e-02	ci left: 1.655577e-02	ci right 1.827554e-02	k: 1566	n:90000
Cons ci ratio: 7.921385e-02	ci left: 2.543859e-02	ci right 2.754763e-02	k: 2383	n:90000
KS ci ratio: 8.965335e-02	ci left: 1.986666e-02	ci right 2.174218e-02	k: 1871	n:90000
PTOV1   90000 perm   19 sec   (4767 perm/sec)   p_kst 2.078889e-02   p_cons 2.647778e-02   p_joint 1.740000e-02

Outputting figure to mutsig2_images.part000000000140/PTOV1.2_1299_90000_0.020789_0.026478_0.0174.png
                gene_name: PTOV1
               theta_stop: 0.098 
                    nperm: 90000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.022 
                   p_cons: 0.026 
      ci_cons_bounds_left: 0.025 
     ci_cons_bounds_right: 0.028 
                  p_joint: 0.017 
     ci_joint_bounds_left: 0.017 
    ci_joint_bounds_right: 0.018 

Current progress: 84 percent done.
PTP4A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.088336e-02	ci left: 9.232741e-01	ci right 9.334747e-01	k: 9285	n:10000
Cons ci ratio: 3.768697e-02	ci left: 5.097532e-01	ci right 5.294354e-01	k: 5196	n:10000
KS ci ratio: 2.823355e-02	ci left: 6.490099e-01	ci right 6.676978e-01	k: 6584	n:10000
PTP4A3   10000 perm   1 sec   (6878 perm/sec)   p_kst 6.584000e-01   p_cons 5.196000e-01   p_joint 9.285000e-01

Outputting figure to mutsig2_images.part000000000140/PTP4A3.2_542_10000_0.6584_0.5196_0.9285.png
                gene_name: PTP4A3
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 86 percent done.
PTPDC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.141594e-02	ci left: 3.580403e-01	ci right 3.770370e-01	k: 3675	n:10000
Cons ci ratio: 1.429861e-01	ci left: 6.488166e-02	ci right 7.497062e-02	k: 698	n:10000
KS ci ratio: 1.978425e-02	ci left: 7.889804e-01	ci right 8.048463e-01	k: 7970	n:10000
PTPDC1   10000 perm   2 sec   (6141 perm/sec)   p_kst 7.970000e-01   p_cons 6.980000e-02   p_joint 3.675000e-01

Joint ci ratio: 2.632945e-02	ci left: 5.187013e-01	ci right 5.325912e-01	k: 10513	n:20000
Cons ci ratio: 1.014602e-01	ci left: 6.591574e-02	ci right 7.301005e-02	k: 1388	n:20000
KS ci ratio: 1.390068e-02	ci left: 7.934282e-01	ci right 8.045847e-01	k: 15981	n:20000
PTPDC1   20000 perm   4 sec   (5474 perm/sec)   p_kst 7.990500e-01   p_cons 6.940000e-02   p_joint 5.256500e-01

Joint ci ratio: 2.041007e-02	ci left: 5.458174e-01	ci right 5.571060e-01	k: 16544	n:30000
Cons ci ratio: 7.915750e-02	ci left: 7.256766e-02	ci right 7.858151e-02	k: 2266	n:30000
KS ci ratio: 1.136215e-02	ci left: 7.941172e-01	ci right 8.032249e-01	k: 23961	n:30000
PTPDC1   30000 perm   6 sec   (5226 perm/sec)   p_kst 7.987000e-01   p_cons 7.553333e-02   p_joint 5.514667e-01

Outputting figure to mutsig2_images.part000000000140/PTPDC1.2_2543_30000_0.7987_0.075533_0.55147.png
                gene_name: PTPDC1
               theta_stop: 0.079 
                    nperm: 30000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.076 
      ci_cons_bounds_left: 0.073 
     ci_cons_bounds_right: 0.079 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.56 

Current progress: 88 percent done.
PTPLA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.528930e-02	ci left: 8.612085e-01	ci right 8.745764e-01	k: 8680	n:10000
Cons ci ratio: 1.592875e-01	ci left: 5.253552e-02	ci right 6.172460e-02	k: 570	n:10000
KS ci ratio: 6.508261e-02	ci left: 2.574577e-01	ci right 2.748787e-01	k: 2661	n:10000
PTPLA   10000 perm   1 sec   (6805 perm/sec)   p_kst 2.661000e-01   p_cons 5.700000e-02   p_joint 8.680000e-01

Joint ci ratio: 8.156040e-03	ci left: 9.165112e-01	ci right 9.240660e-01	k: 18407	n:20000
Cons ci ratio: 1.133214e-01	ci left: 5.324249e-02	ci right 5.968722e-02	k: 1128	n:20000
KS ci ratio: 4.585633e-02	ci left: 2.614240e-01	ci right 2.737436e-01	k: 5351	n:20000
PTPLA   20000 perm   3 sec   (6002 perm/sec)   p_kst 2.675500e-01   p_cons 5.640000e-02   p_joint 9.203500e-01

Joint ci ratio: 7.535003e-03	ci left: 8.967866e-01	ci right 9.036024e-01	k: 27007	n:30000
Cons ci ratio: 9.402220e-02	ci left: 5.218599e-02	ci right 5.736733e-02	k: 1642	n:30000
KS ci ratio: 3.764646e-02	ci left: 2.604429e-01	ci right 2.704692e-01	k: 7963	n:30000
PTPLA   30000 perm   5 sec   (5701 perm/sec)   p_kst 2.654333e-01   p_cons 5.473333e-02   p_joint 9.002333e-01

Outputting figure to mutsig2_images.part000000000140/PTPLA.2_895_30000_0.26543_0.054733_0.90023.png
                gene_name: PTPLA
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.055 
      ci_cons_bounds_left: 0.052 
     ci_cons_bounds_right: 0.057 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.90 

Current progress: 91 percent done.
PTPN12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.009714e-03	ci left: 9.454415e-01	ci right 9.540941e-01	k: 9499	n:10000
KS ci ratio: 1.365768e-02	ci left: 8.855472e-01	ci right 8.978236e-01	k: 8918	n:10000
PTPN12   10000 perm   2 sec   (6051 perm/sec)   p_kst 8.918000e-01   p_cons 9.499000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000140/PTPN12.2_2415_10000_0.8918_0.9499_1.png
                gene_name: PTPN12
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
PTPN21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.918346e-02	ci left: 7.989230e-01	ci right 8.144979e-01	k: 8068	n:10000
Cons ci ratio: 1.386189e-02	ci left: 8.825771e-01	ci right 8.949954e-01	k: 8889	n:10000
KS ci ratio: 1.392727e-01	ci left: 6.826660e-02	ci right 7.858355e-02	k: 733	n:10000
PTPN21   10000 perm   2 sec   (5568 perm/sec)   p_kst 7.330000e-02   p_cons 8.889000e-01   p_joint 8.068000e-01

Joint ci ratio: 1.029731e-02	ci left: 8.741460e-01	ci right 8.832435e-01	k: 17575	n:20000
Cons ci ratio: 9.855119e-03	ci left: 8.833444e-01	ci right 8.921425e-01	k: 17756	n:20000
KS ci ratio: 9.906657e-02	ci left: 6.899234e-02	ci right 7.623250e-02	k: 1451	n:20000
PTPN21   20000 perm   4 sec   (4967 perm/sec)   p_kst 7.255000e-02   p_cons 8.878000e-01   p_joint 8.787500e-01

Outputting figure to mutsig2_images.part000000000140/PTPN21.2_3597_20000_0.07255_0.8878_0.87875.png
                gene_name: PTPN21
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.073 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.076 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 95 percent done.
PTPN23
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.298170e-02	ci left: 7.355281e-01	ci right 7.527294e-01	k: 7442	n:10000
Cons ci ratio: 1.934937e-02	ci left: 7.961830e-01	ci right 8.118395e-01	k: 8041	n:10000
KS ci ratio: 3.192992e-02	ci left: 5.914243e-01	ci right 6.107168e-01	k: 6011	n:10000
PTPN23   10000 perm   2 sec   (5105 perm/sec)   p_kst 6.011000e-01   p_cons 8.041000e-01   p_joint 7.442000e-01

Outputting figure to mutsig2_images.part000000000140/PTPN23.2_5011_10000_0.6011_0.8041_0.7442.png
                gene_name: PTPN23
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.75 

Current progress: 98 percent done.
PTPRE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.858267e-01	ci left: 3.863000e-02	ci right 4.663920e-02	k: 425	n:10000
Cons ci ratio: 1.547402e-01	ci left: 5.561671e-02	ci right 6.504144e-02	k: 602	n:10000
KS ci ratio: 1.127694e-01	ci left: 1.016890e-01	ci right 1.139406e-01	k: 1077	n:10000
PTPRE   10000 perm   2 sec   (6230 perm/sec)   p_kst 1.077000e-01   p_cons 6.020000e-02   p_joint 4.250000e-02

Joint ci ratio: 2.052261e-02	ci left: 6.392262e-01	ci right 6.525313e-01	k: 12918	n:20000
Cons ci ratio: 1.425113e-01	ci left: 3.384702e-02	ci right 3.908886e-02	k: 728	n:20000
KS ci ratio: 7.967941e-02	ci left: 1.036324e-01	ci right 1.122820e-01	k: 2158	n:20000
PTPRE   20000 perm   4 sec   (5535 perm/sec)   p_kst 1.079000e-01   p_cons 3.640000e-02   p_joint 6.459000e-01

Joint ci ratio: 5.220621e-02	ci left: 1.540541e-01	ci right 1.623455e-01	k: 4745	n:30000
Cons ci ratio: 1.161132e-01	ci left: 3.447105e-02	ci right 3.875263e-02	k: 1097	n:30000
KS ci ratio: 6.509782e-02	ci left: 1.043121e-01	ci right 1.113641e-01	k: 3234	n:30000
PTPRE   30000 perm   6 sec   (5277 perm/sec)   p_kst 1.078000e-01   p_cons 3.656667e-02   p_joint 1.581667e-01

Joint ci ratio: 4.521626e-02	ci left: 1.545866e-01	ci right 1.617631e-01	k: 6326	n:40000
Cons ci ratio: 1.010238e-01	ci left: 3.443953e-02	ci right 3.812818e-02	k: 1450	n:40000
KS ci ratio: 5.618934e-02	ci left: 1.054188e-01	ci right 1.115382e-01	k: 4338	n:40000
PTPRE   40000 perm   8 sec   (5103 perm/sec)   p_kst 1.084500e-01   p_cons 3.625000e-02   p_joint 1.581500e-01

Joint ci ratio: 4.043892e-02	ci left: 1.549914e-01	ci right 1.614083e-01	k: 7909	n:50000
Cons ci ratio: 8.958634e-02	ci left: 3.522541e-02	ci right 3.854864e-02	k: 1843	n:50000
KS ci ratio: 5.041782e-02	ci left: 1.051340e-01	ci right 1.105916e-01	k: 5392	n:50000
PTPRE   50000 perm   10 sec   (4967 perm/sec)   p_kst 1.078400e-01   p_cons 3.686000e-02   p_joint 1.581800e-01

Outputting figure to mutsig2_images.part000000000140/PTPRE.2_2218_50000_0.10784_0.03686_0.15818.png
                gene_name: PTPRE
               theta_stop: 0.090 
                    nperm: 50000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.037 
      ci_cons_bounds_left: 0.035 
     ci_cons_bounds_right: 0.039 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000140
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 140 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1714>
Subject: Job 8004463: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1714>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000141> was used as the working directory.
Started at Sun Nov 11 17:11:10 2012
Results reported at Sun Nov 11 20:09:56 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000141.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000141.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 141  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000141.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  17814.13 sec.
    Max Memory :      4809 MB
    Max Swap   :      7311 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
141
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 141
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 141: processing genes 12667 - 12756
Calculating significance of each gene.
Using projection method.
12667	PTPRG	7.932257e-01
12668	PTPRH	3.419831e-01
12669	PTPRJ	7.708783e-01
12670	PTPRK	3.063006e-01
12671	PTPRM	9.932705e-01
12672	PTPRN	8.442759e-01
12673	PTPRN2	4.175139e-01
12674	PTPRO	7.240815e-01
12675	PTPRR	2.360623e-02
12676	PTPRS	9.812078e-01
12677	PTPRT	4.774372e-01
12678	PTPRU	3.581694e-01
12679	PTPRZ1	9.808713e-01
12680	PTRF	4.423340e-01
12681	PTRH1	1
12682	PTRH2	1
12683	PTS	1
12684	PTTG1	1.553538e-01
12685	PTTG1IP	1
12686	PTTG2	1.614186e-01
12687	PTX3	1.747481e-01
12688	PTX4	1
12689	PUF60	5.221105e-01
12690	PUM1	8.419271e-01
12691	PUM2	5.941229e-01
12692	PURA	6.185537e-01
12693	PURB	1
12694	PURG	1
12695	PUS1	1
12696	PUS10	5.793171e-01
12697	PUS3	7.362211e-01
12698	PUS7	3.859328e-01
12699	PUS7L	4.830434e-01
12700	PUSL1	4.219661e-02
12701	PVALB	3.322655e-01
12702	PVR	5.682266e-01
12703	PVRIG	1
12704	PVRL1	6.066133e-01
12705	PVRL2	1
12706	PVRL3	3.528737e-01
12707	PVRL4	3.388151e-02
12708	PWP1	6.930031e-01
12709	PWP2	7.308733e-01
12710	PWWP2A	1
12711	PWWP2B	2.119755e-01
12712	PXDN	1
12713	PXDNL	1
12714	PXK	4.768816e-01
12715	PXMP2	1
12716	PXMP4	1.525897e-01
12717	PXN	6.539757e-01
12718	PXT1	1
12719	PYCARD	1
12720	PYCR1	6.881276e-01
12721	PYCR2	1
12722	PYCRL	1
12723	PYDC1	2.462340e-01
12724	PYDC2	1.499844e-01
12725	PYGB	4.628312e-01
12726	PYGL	7.007438e-01
12727	PYGM	3.330948e-01
12728	PYGO1	1
12729	PYGO2	5.045858e-01
12730	PYHIN1	2.486291e-05
12731	PYROXD1	1
12732	PYROXD2	1
12733	PYY	1
12734	PZP	9.931717e-01
12735	ProSAPiP1	8.922280e-01
12736	QARS	1
12737	QDPR	1
12738	QKI	1
12739	QPCT	1
12740	QPCTL	1
12741	QPRT	1
12742	QRFP	4.313013e-01
12743	QRFPR	5.714969e-03
12744	QRICH1	6.699256e-01
12745	QRICH2	9.401812e-01
12746	QRSL1	5.461706e-01
12747	QSER1	7.357871e-01
12748	QSOX1	1
12749	QSOX2	3.305595e-01
12750	QTRT1	1
12751	QTRTD1	1
12752	R3HDM1	5.551586e-01
12753	R3HDM2	1
12754	R3HDML	9.734178e-02
12755	RAB10	4.613186e-01
12756	RAB11A	5.846415e-01
Done

Running MutSig 2:
Scatter job 141: processing genes 12667 - 12756
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
PXDNL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.093325e-01	ci left: 1.076389e-01	ci right 1.201870e-01	k: 1138	n:10000
Cons ci ratio: 3.673940e-02	ci left: 5.224624e-01	ci right 5.421187e-01	k: 5323	n:10000
KS ci ratio: 2.031327e-01	ci left: 3.224430e-02	ci right 3.962922e-02	k: 358	n:10000
PXDNL   10000 perm   3 sec   (3944 perm/sec)   p_kst 3.580000e-02   p_cons 5.323000e-01   p_joint 1.138000e-01

Joint ci ratio: 9.371018e-02	ci left: 7.666776e-02	ci right 8.425474e-02	k: 1608	n:20000
Cons ci ratio: 2.601700e-02	ci left: 5.246552e-01	ci right 5.385357e-01	k: 10632	n:20000
KS ci ratio: 1.423089e-01	ci left: 3.394357e-02	ci right 3.919227e-02	k: 730	n:20000
PXDNL   20000 perm   9 sec   (2331 perm/sec)   p_kst 3.650000e-02   p_cons 5.316000e-01   p_joint 8.040000e-02

Joint ci ratio: 6.214375e-02	ci left: 1.134492e-01	ci right 1.207585e-01	k: 3512	n:30000
Cons ci ratio: 2.104221e-02	ci left: 5.306704e-01	ci right 5.419892e-01	k: 16090	n:30000
KS ci ratio: 1.170009e-01	ci left: 3.395273e-02	ci right 3.820439e-02	k: 1081	n:30000
PXDNL   30000 perm   11 sec   (2626 perm/sec)   p_kst 3.603333e-02   p_cons 5.363333e-01   p_joint 1.170667e-01

Joint ci ratio: 5.782452e-02	ci left: 1.000623e-01	ci right 1.060454e-01	k: 4121	n:40000
Cons ci ratio: 1.830436e-02	ci left: 5.292217e-01	ci right 5.390234e-01	k: 21365	n:40000
KS ci ratio: 1.012412e-01	ci left: 3.429319e-02	ci right 3.797454e-02	k: 1444	n:40000
PXDNL   40000 perm   14 sec   (2771 perm/sec)   p_kst 3.610000e-02   p_cons 5.341250e-01   p_joint 1.030250e-01

Joint ci ratio: 5.548679e-02	ci left: 8.823609e-02	ci right 9.329153e-02	k: 4537	n:50000
Cons ci ratio: 1.638667e-02	ci left: 5.292955e-01	ci right 5.380606e-01	k: 26684	n:50000
KS ci ratio: 9.042984e-02	ci left: 3.457974e-02	ci right 3.787439e-02	k: 1810	n:50000
PXDNL   50000 perm   17 sec   (2888 perm/sec)   p_kst 3.620000e-02   p_cons 5.336800e-01   p_joint 9.074000e-02

Outputting figure to mutsig2_images.part000000000141/PXDNL.26_4484_50000_0.0362_0.53368_0.09074.png
                gene_name: PXDNL
               theta_stop: 0.090 
                    nperm: 50000 
                     p_ks: 0.036 
        ci_ks_bounds_left: 0.035 
       ci_ks_bounds_right: 0.038 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.091 
     ci_joint_bounds_left: 0.088 
    ci_joint_bounds_right: 0.093 

Current progress: 2 percent done.
PTPRT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.418105e-03	ci left: 9.408695e-01	ci right 9.498689e-01	k: 9455	n:10000
Cons ci ratio: 1.447174e-02	ci left: 8.735722e-01	ci right 8.864055e-01	k: 8801	n:10000
KS ci ratio: 1.860317e-02	ci left: 8.084670e-01	ci right 8.237484e-01	k: 8162	n:10000
PTPRT   10000 perm   2 sec   (4167 perm/sec)   p_kst 8.162000e-01   p_cons 8.801000e-01   p_joint 9.455000e-01

Outputting figure to mutsig2_images.part000000000141/PTPRT.20_4511_10000_0.8162_0.8801_0.9455.png
                gene_name: PTPRT
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 4 percent done.
PYHIN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.689963e-02	ci left: 8.360254e-01	ci right 8.503741e-01	k: 8433	n:10000
Cons ci ratio: 1.404356e-02	ci left: 8.799154e-01	ci right 8.924587e-01	k: 8863	n:10000
KS ci ratio: 3.743116e-02	ci left: 5.131551e-01	ci right 5.328315e-01	k: 5230	n:10000
PYHIN1   10000 perm   2 sec   (5421 perm/sec)   p_kst 5.230000e-01   p_cons 8.863000e-01   p_joint 8.433000e-01

Outputting figure to mutsig2_images.part000000000141/PYHIN1.13_1538_10000_0.523_0.8863_0.8433.png
                gene_name: PYHIN1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 6 percent done.
PTPRO
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.524631e-02	ci left: 6.977684e-01	ci right 7.157111e-01	k: 7068	n:10000
Cons ci ratio: 2.653771e-02	ci left: 6.764980e-01	ci right 6.947937e-01	k: 6857	n:10000
KS ci ratio: 3.243155e-02	ci left: 5.838973e-01	ci right 6.032481e-01	k: 5936	n:10000
PTPRO   10000 perm   2 sec   (5032 perm/sec)   p_kst 5.936000e-01   p_cons 6.857000e-01   p_joint 7.068000e-01

Outputting figure to mutsig2_images.part000000000141/PTPRO.11_3755_10000_0.5936_0.6857_0.7068.png
                gene_name: PTPRO
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 8 percent done.
PXDN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.062465e-02	ci left: 7.749918e-01	ci right 7.912430e-01	k: 7832	n:10000
Cons ci ratio: 3.745367e-02	ci left: 5.128549e-01	ci right 5.325319e-01	k: 5227	n:10000
KS ci ratio: 3.493343e-02	ci left: 5.474992e-01	ci right 5.670674e-01	k: 5573	n:10000
PXDN   10000 perm   2 sec   (4551 perm/sec)   p_kst 5.573000e-01   p_cons 5.227000e-01   p_joint 7.832000e-01

Outputting figure to mutsig2_images.part000000000141/PXDN.11_4532_10000_0.5573_0.5227_0.7832.png
                gene_name: PXDN
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 10 percent done.
PZP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.834631e-02	ci left: 3.018342e-01	ci right 3.200760e-01	k: 3109	n:10000
Cons ci ratio: 9.201623e-02	ci left: 1.464866e-01	ci right 1.607158e-01	k: 1535	n:10000
KS ci ratio: 3.980231e-02	ci left: 4.824548e-01	ci right 5.021497e-01	k: 4923	n:10000
PZP   10000 perm   2 sec   (4427 perm/sec)   p_kst 4.923000e-01   p_cons 1.535000e-01   p_joint 3.109000e-01

Outputting figure to mutsig2_images.part000000000141/PZP.11_4593_10000_0.4923_0.1535_0.3109.png
                gene_name: PZP
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 12 percent done.
PTPRN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.187199e-01	ci left: 9.243507e-02	ci right 1.042001e-01	k: 982	n:10000
Cons ci ratio: 9.977908e-02	ci left: 1.269892e-01	ci right 1.404250e-01	k: 1336	n:10000
KS ci ratio: 8.028430e-02	ci left: 1.847145e-01	ci right 2.002650e-01	k: 1924	n:10000
PTPRN   10000 perm   2 sec   (4935 perm/sec)   p_kst 1.924000e-01   p_cons 1.336000e-01   p_joint 9.820000e-02

Joint ci ratio: 7.168948e-02	ci left: 1.253682e-01	ci right 1.347397e-01	k: 2600	n:20000
Cons ci ratio: 7.075435e-02	ci left: 1.283224e-01	ci right 1.377845e-01	k: 2660	n:20000
KS ci ratio: 5.840073e-02	ci left: 1.784534e-01	ci right 1.892387e-01	k: 3676	n:20000
PTPRN   20000 perm   4 sec   (4510 perm/sec)   p_kst 1.838000e-01   p_cons 1.330000e-01   p_joint 1.300000e-01

Outputting figure to mutsig2_images.part000000000141/PTPRN.10_3032_20000_0.1838_0.133_0.13.png
                gene_name: PTPRN
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 15 percent done.
PTPRR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.596265e-02	ci left: 4.112975e-01	ci right 4.307486e-01	k: 4210	n:10000
Cons ci ratio: 8.167954e-02	ci left: 1.794983e-01	ci right 1.948844e-01	k: 1871	n:10000
KS ci ratio: 3.393915e-02	ci left: 5.617312e-01	ci right 5.812271e-01	k: 5715	n:10000
PTPRR   10000 perm   2 sec   (5565 perm/sec)   p_kst 5.715000e-01   p_cons 1.871000e-01   p_joint 4.210000e-01

Outputting figure to mutsig2_images.part000000000141/PTPRR.9_2030_10000_0.5715_0.1871_0.421.png
                gene_name: PTPRR
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 17 percent done.
PTPRZ1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.211153e-02	ci left: 1.779240e-01	ci right 1.932596e-01	k: 1855	n:10000
Cons ci ratio: 1.255649e-02	ci left: 9.011385e-01	ci right 9.126232e-01	k: 9070	n:10000
KS ci ratio: 1.143206e-01	ci left: 9.915477e-02	ci right 1.112763e-01	k: 1051	n:10000
PTPRZ1   10000 perm   3 sec   (3981 perm/sec)   p_kst 1.051000e-01   p_cons 9.070000e-01   p_joint 1.855000e-01

Joint ci ratio: 4.679282e-02	ci left: 2.536335e-01	ci right 2.658364e-01	k: 5194	n:20000
Cons ci ratio: 9.109471e-03	ci left: 8.983561e-01	ci right 9.066264e-01	k: 18051	n:20000
KS ci ratio: 8.146729e-02	ci left: 9.950760e-02	ci right 1.080080e-01	k: 2074	n:20000
PTPRZ1   20000 perm   5 sec   (3681 perm/sec)   p_kst 1.037000e-01   p_cons 9.025500e-01   p_joint 2.597000e-01

Outputting figure to mutsig2_images.part000000000141/PTPRZ1.9_7068_20000_0.1037_0.90255_0.2597.png
                gene_name: PTPRZ1
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.100 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 19 percent done.
PTPRH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.143814e-01	ci left: 9.905732e-02	ci right 1.111738e-01	k: 1050	n:10000
Cons ci ratio: 2.509415e-02	ci left: 7.002900e-01	ci right 7.181879e-01	k: 7093	n:10000
KS ci ratio: 2.191527e-01	ci left: 2.759554e-02	ci right 3.448123e-02	k: 309	n:10000
PTPRH   10000 perm   2 sec   (5118 perm/sec)   p_kst 3.090000e-02   p_cons 7.093000e-01   p_joint 1.050000e-01

Joint ci ratio: 8.231076e-02	ci left: 9.764233e-02	ci right 1.060738e-01	k: 2036	n:20000
Cons ci ratio: 1.770381e-02	ci left: 7.039077e-01	ci right 7.165312e-01	k: 14205	n:20000
KS ci ratio: 1.544545e-01	ci left: 2.878572e-02	ci right 3.365183e-02	k: 623	n:20000
PTPRH   20000 perm   4 sec   (4704 perm/sec)   p_kst 3.115000e-02   p_cons 7.102500e-01   p_joint 1.018000e-01

Joint ci ratio: 8.058925e-02	ci left: 7.014654e-02	ci right 7.606979e-02	k: 2192	n:30000
Cons ci ratio: 1.478185e-02	ci left: 6.957499e-01	ci right 7.061445e-01	k: 21029	n:30000
KS ci ratio: 1.263916e-01	ci left: 2.909993e-02	ci right 3.305824e-02	k: 931	n:30000
PTPRH   30000 perm   7 sec   (4376 perm/sec)   p_kst 3.103333e-02   p_cons 7.009667e-01   p_joint 7.306667e-02

Joint ci ratio: 7.130359e-02	ci left: 6.773966e-02	ci right 7.277295e-02	k: 2809	n:40000
Cons ci ratio: 1.278447e-02	ci left: 6.970137e-01	ci right 7.060070e-01	k: 28061	n:40000
KS ci ratio: 1.100389e-01	ci left: 2.905546e-02	ci right 3.246311e-02	k: 1229	n:40000
PTPRH   40000 perm   9 sec   (4279 perm/sec)   p_kst 3.072500e-02   p_cons 7.015250e-01   p_joint 7.022500e-02

Joint ci ratio: 5.874963e-02	ci left: 7.935294e-02	ci right 8.417575e-02	k: 4087	n:50000
Cons ci ratio: 1.143057e-02	ci left: 6.976481e-01	ci right 7.056885e-01	k: 35084	n:50000
KS ci ratio: 9.794653e-02	ci left: 2.951763e-02	ci right 3.257713e-02	k: 1551	n:50000
PTPRH   50000 perm   12 sec   (4198 perm/sec)   p_kst 3.102000e-02   p_cons 7.016800e-01   p_joint 8.174000e-02

Outputting figure to mutsig2_images.part000000000141/PTPRH.8_3428_50000_0.03102_0.70168_0.08174.png
                gene_name: PTPRH
               theta_stop: 0.098 
                    nperm: 50000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.030 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.082 
     ci_joint_bounds_left: 0.079 
    ci_joint_bounds_right: 0.084 

Current progress: 21 percent done.
PTPRN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.296142e-02	ci left: 8.954920e-01	ci right 9.072730e-01	k: 9015	n:10000
Cons ci ratio: 1.382680e-02	ci left: 8.830891e-01	ci right 8.954831e-01	k: 8894	n:10000
KS ci ratio: 2.055178e-02	ci left: 7.762076e-01	ci right 7.924264e-01	k: 7844	n:10000
PTPRN2   10000 perm   2 sec   (5164 perm/sec)   p_kst 7.844000e-01   p_cons 8.894000e-01   p_joint 9.015000e-01

Outputting figure to mutsig2_images.part000000000141/PTPRN2.8_3140_10000_0.7844_0.8894_0.9015.png
                gene_name: PTPRN2
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 23 percent done.
PTPRK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.372743e-02	ci left: 3.379640e-01	ci right 3.567250e-01	k: 3473	n:10000
Cons ci ratio: 7.047050e-02	ci left: 2.279029e-01	ci right 2.446510e-01	k: 2362	n:10000
KS ci ratio: 6.105377e-02	ci left: 2.829019e-01	ci right 3.008195e-01	k: 2918	n:10000
PTPRK   10000 perm   2 sec   (4656 perm/sec)   p_kst 2.918000e-01   p_cons 2.362000e-01   p_joint 3.473000e-01

Outputting figure to mutsig2_images.part000000000141/PTPRK.7_4465_10000_0.2918_0.2362_0.3473.png
                gene_name: PTPRK
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 25 percent done.
PTPRU
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.451070e-02	ci left: 5.535118e-01	ci right 5.730513e-01	k: 5633	n:10000
Cons ci ratio: 8.173326e-02	ci left: 1.793015e-01	ci right 1.946813e-01	k: 1869	n:10000
KS ci ratio: 2.412351e-02	ci left: 7.164367e-01	ci right 7.340319e-01	k: 7253	n:10000
PTPRU   10000 perm   2 sec   (4729 perm/sec)   p_kst 7.253000e-01   p_cons 1.869000e-01   p_joint 5.633000e-01

Outputting figure to mutsig2_images.part000000000141/PTPRU.7_4487_10000_0.7253_0.1869_0.5633.png
                gene_name: PTPRU
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 27 percent done.
PTPRM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.296359e-02	ci left: 7.358313e-01	ci right 7.530260e-01	k: 7445	n:10000
Cons ci ratio: 3.586320e-02	ci left: 5.344770e-01	ci right 5.540972e-01	k: 5443	n:10000
KS ci ratio: 2.276448e-02	ci left: 7.391670e-01	ci right 7.562885e-01	k: 7478	n:10000
PTPRM   10000 perm   2 sec   (4312 perm/sec)   p_kst 7.478000e-01   p_cons 5.443000e-01   p_joint 7.445000e-01

Outputting figure to mutsig2_images.part000000000141/PTPRM.6_4530_10000_0.7478_0.5443_0.7445.png
                gene_name: PTPRM
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.75 

Current progress: 29 percent done.
PVRL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.972311e-02	ci left: 7.899946e-01	ci right 8.058315e-01	k: 7980	n:10000
KS ci ratio: 1.619083e-02	ci left: 8.472320e-01	ci right 8.611609e-01	k: 8543	n:10000
PVRL4   10000 perm   2 sec   (5285 perm/sec)   p_kst 8.543000e-01   p_cons 7.980000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000141/PVRL4.6_1569_10000_0.8543_0.798_1.png
                gene_name: PVRL4
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 31 percent done.
PYGM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.434813e-02	ci left: 8.754132e-01	ci right 8.881634e-01	k: 8819	n:10000
Cons ci ratio: 3.696871e-02	ci left: 5.193596e-01	ci right 5.390234e-01	k: 5292	n:10000
KS ci ratio: 7.021289e-03	ci left: 9.654135e-01	ci right 9.723098e-01	k: 9690	n:10000
PYGM   10000 perm   2 sec   (5331 perm/sec)   p_kst 9.690000e-01   p_cons 5.292000e-01   p_joint 8.819000e-01

Outputting figure to mutsig2_images.part000000000141/PYGM.6_2609_10000_0.969_0.5292_0.8819.png
                gene_name: PYGM
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 33 percent done.
QRFPR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.080238e-02	ci left: 4.700652e-01	ci right 4.897466e-01	k: 4799	n:10000
Cons ci ratio: 2.067321e-02	ci left: 7.741813e-01	ci right 7.904539e-01	k: 7824	n:10000
KS ci ratio: 6.169492e-02	ci left: 2.786422e-01	ci right 2.964817e-01	k: 2875	n:10000
QRFPR   10000 perm   2 sec   (5560 perm/sec)   p_kst 2.875000e-01   p_cons 7.824000e-01   p_joint 4.799000e-01

Outputting figure to mutsig2_images.part000000000141/QRFPR.6_1320_10000_0.2875_0.7824_0.4799.png
                gene_name: QRFPR
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 35 percent done.
QSER1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.347034e-02	ci left: 5.685494e-01	ci right 5.880049e-01	k: 5783	n:10000
Cons ci ratio: 2.133959e-02	ci left: 7.630411e-01	ci right 7.796005e-01	k: 7714	n:10000
KS ci ratio: 5.133863e-02	ci left: 3.587363e-01	ci right 3.777405e-01	k: 3682	n:10000
QSER1   10000 perm   2 sec   (4432 perm/sec)   p_kst 3.682000e-01   p_cons 7.714000e-01   p_joint 5.783000e-01

Outputting figure to mutsig2_images.part000000000141/QSER1.6_5252_10000_0.3682_0.7714_0.5783.png
                gene_name: QSER1
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 38 percent done.
R3HDM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.834058e-02	ci left: 1.303171e-01	ci right 1.438950e-01	k: 1370	n:10000
Cons ci ratio: 1.057501e-01	ci left: 1.143760e-01	ci right 1.272458e-01	k: 1207	n:10000
KS ci ratio: 6.455374e-02	ci left: 2.606239e-01	ci right 2.781107e-01	k: 2693	n:10000
R3HDM1   10000 perm   2 sec   (5172 perm/sec)   p_kst 2.693000e-01   p_cons 1.207000e-01   p_joint 1.370000e-01

Joint ci ratio: 4.945392e-02	ci left: 2.331028e-01	ci right 2.449732e-01	k: 4780	n:20000
Cons ci ratio: 7.476036e-02	ci left: 1.163138e-01	ci right 1.253968e-01	k: 2416	n:20000
KS ci ratio: 4.569892e-02	ci left: 2.627640e-01	ci right 2.751032e-01	k: 5378	n:20000
R3HDM1   20000 perm   4 sec   (4713 perm/sec)   p_kst 2.689000e-01   p_cons 1.208000e-01   p_joint 2.390000e-01

Outputting figure to mutsig2_images.part000000000141/R3HDM1.5_3396_20000_0.2689_0.1208_0.239.png
                gene_name: R3HDM1
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 40 percent done.
PTPRG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.440474e-02	ci left: 4.281453e-01	ci right 4.476909e-01	k: 4379	n:10000
Cons ci ratio: 5.174931e-02	ci left: 3.550575e-01	ci right 3.740215e-01	k: 3645	n:10000
KS ci ratio: 3.838735e-02	ci left: 5.005505e-01	ci right 5.202435e-01	k: 5104	n:10000
PTPRG   10000 perm   2 sec   (4847 perm/sec)   p_kst 5.104000e-01   p_cons 3.645000e-01   p_joint 4.379000e-01

Outputting figure to mutsig2_images.part000000000141/PTPRG.4_4458_10000_0.5104_0.3645_0.4379.png
                gene_name: PTPRG
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 42 percent done.
PTPRJ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.880677e-02	ci left: 6.398548e-01	ci right 6.586581e-01	k: 6493	n:10000
Cons ci ratio: 2.477813e-02	ci left: 7.055362e-01	ci right 7.233387e-01	k: 7145	n:10000
KS ci ratio: 4.541090e-02	ci left: 4.171780e-01	ci right 4.366646e-01	k: 4269	n:10000
PTPRJ   10000 perm   2 sec   (5100 perm/sec)   p_kst 4.269000e-01   p_cons 7.145000e-01   p_joint 6.493000e-01

Outputting figure to mutsig2_images.part000000000141/PTPRJ.4_4123_10000_0.4269_0.7145_0.6493.png
                gene_name: PTPRJ
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 44 percent done.
PUM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.791351e-02	ci left: 3.050079e-01	ci right 3.233005e-01	k: 3141	n:10000
Cons ci ratio: 6.570466e-02	ci left: 2.537975e-01	ci right 2.711410e-01	k: 2624	n:10000
KS ci ratio: 7.275060e-02	ci left: 2.167479e-01	ci right 2.332127e-01	k: 2249	n:10000
PUM1   10000 perm   2 sec   (5156 perm/sec)   p_kst 2.249000e-01   p_cons 2.624000e-01   p_joint 3.141000e-01

Outputting figure to mutsig2_images.part000000000141/PUM1.4_3651_10000_0.2249_0.2624_0.3141.png
                gene_name: PUM1
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 46 percent done.
PUM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.003386e-02	ci left: 4.795567e-01	ci right 4.992495e-01	k: 4894	n:10000
Cons ci ratio: 1.628172e-02	ci left: 8.458050e-01	ci right 8.597888e-01	k: 8529	n:10000
KS ci ratio: 4.546661e-02	ci left: 4.165799e-01	ci right 4.360631e-01	k: 4263	n:10000
PUM2   10000 perm   2 sec   (5635 perm/sec)   p_kst 4.263000e-01   p_cons 8.529000e-01   p_joint 4.894000e-01

Outputting figure to mutsig2_images.part000000000141/PUM2.4_3275_10000_0.4263_0.8529_0.4894.png
                gene_name: PUM2
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 48 percent done.
PYGB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.423304e-01	ci left: 6.546168e-02	ci right 7.559023e-02	k: 704	n:10000
Cons ci ratio: 7.532587e-02	ci left: 2.050098e-01	ci right 2.211576e-01	k: 2130	n:10000
KS ci ratio: 1.535246e-01	ci left: 5.648398e-02	ci right 6.597362e-02	k: 611	n:10000
PYGB   10000 perm   2 sec   (5882 perm/sec)   p_kst 6.110000e-02   p_cons 2.130000e-01   p_joint 7.040000e-02

Joint ci ratio: 9.699335e-02	ci left: 7.182651e-02	ci right 7.919747e-02	k: 1509	n:20000
Cons ci ratio: 5.321645e-02	ci left: 2.076893e-01	ci right 2.190941e-01	k: 4267	n:20000
KS ci ratio: 1.096138e-01	ci left: 5.679652e-02	ci right 6.343209e-02	k: 1201	n:20000
PYGB   20000 perm   4 sec   (5300 perm/sec)   p_kst 6.005000e-02   p_cons 2.133500e-01   p_joint 7.545000e-02

Joint ci ratio: 9.739180e-02	ci left: 4.873281e-02	ci right 5.375454e-02	k: 1536	n:30000
Cons ci ratio: 4.334364e-02	ci left: 2.095687e-01	ci right 2.188867e-01	k: 6426	n:30000
KS ci ratio: 8.861434e-02	ci left: 5.851355e-02	ci right 6.397180e-02	k: 1836	n:30000
PYGB   30000 perm   6 sec   (5077 perm/sec)   p_kst 6.120000e-02   p_cons 2.142000e-01   p_joint 5.120000e-02

Outputting figure to mutsig2_images.part000000000141/PYGB.4_2612_30000_0.0612_0.2142_0.0512.png
                gene_name: PYGB
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.061 
        ci_ks_bounds_left: 0.059 
       ci_ks_bounds_right: 0.064 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.051 
     ci_joint_bounds_left: 0.049 
    ci_joint_bounds_right: 0.054 

Current progress: 50 percent done.
QRICH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.107643e-01	ci left: 1.051021e-01	ci right 1.175253e-01	k: 1112	n:10000
Cons ci ratio: 1.124773e-01	ci left: 1.021764e-01	ci right 1.144528e-01	k: 1082	n:10000
KS ci ratio: 6.417870e-02	ci left: 2.628999e-01	ci right 2.804333e-01	k: 2716	n:10000
QRICH2   10000 perm   2 sec   (4830 perm/sec)   p_kst 2.716000e-01   p_cons 1.082000e-01   p_joint 1.112000e-01

Joint ci ratio: 8.096751e-02	ci left: 1.006368e-01	ci right 1.091784e-01	k: 2097	n:20000
Cons ci ratio: 8.003307e-02	ci left: 1.027974e-01	ci right 1.114172e-01	k: 2141	n:20000
KS ci ratio: 4.453120e-02	ci left: 2.729902e-01	ci right 2.854740e-01	k: 5584	n:20000
QRICH2   20000 perm   5 sec   (4400 perm/sec)   p_kst 2.792000e-01   p_cons 1.070500e-01   p_joint 1.048500e-01

Outputting figure to mutsig2_images.part000000000141/QRICH2.4_5068_20000_0.2792_0.10705_0.10485.png
                gene_name: QRICH2
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 52 percent done.
QSOX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.055786e-02	ci left: 7.761063e-01	ci right 7.923278e-01	k: 7843	n:10000
KS ci ratio: 4.981450e-03	ci left: 9.815599e-01	ci right 9.865523e-01	k: 9842	n:10000
QSOX2   10000 perm   2 sec   (5709 perm/sec)   p_kst 9.842000e-01   p_cons 7.843000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000141/QSOX2.4_2145_10000_0.9842_0.7843_1.png
                gene_name: QSOX2
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 54 percent done.
PTPRS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.442098e-01	ci left: 6.381856e-02	ci right 7.383439e-02	k: 687	n:10000
Cons ci ratio: 3.650251e-01	ci left: 9.321618e-03	ci right 1.357016e-02	k: 113	n:10000
KS ci ratio: 3.107787e-02	ci left: 6.043762e-01	ci right 6.235573e-01	k: 6140	n:10000
PTPRS   10000 perm   2 sec   (4662 perm/sec)   p_kst 6.140000e-01   p_cons 1.130000e-02   p_joint 6.870000e-02

Joint ci ratio: 7.672330e-02	ci left: 1.110031e-01	ci right 1.199090e-01	k: 2308	n:20000
Cons ci ratio: 2.223652e-01	ci left: 1.359738e-02	ci right 1.704562e-02	k: 305	n:20000
KS ci ratio: 2.189776e-02	ci left: 6.089171e-01	ci right 6.224492e-01	k: 12314	n:20000
PTPRS   20000 perm   5 sec   (4233 perm/sec)   p_kst 6.157000e-01   p_cons 1.525000e-02   p_joint 1.154000e-01

Joint ci ratio: 6.267027e-02	ci left: 1.117395e-01	ci right 1.190019e-01	k: 3460	n:30000
Cons ci ratio: 1.842295e-01	ci left: 1.349588e-02	ci right 1.626590e-02	k: 445	n:30000
KS ci ratio: 1.796171e-02	ci left: 6.079957e-01	ci right 6.190489e-01	k: 18406	n:30000
PTPRS   30000 perm   8 sec   (3969 perm/sec)   p_kst 6.135333e-01   p_cons 1.483333e-02   p_joint 1.153333e-01

Joint ci ratio: 4.505144e-02	ci left: 1.555526e-01	ci right 1.627469e-01	k: 6365	n:40000
Cons ci ratio: 1.606022e-01	ci left: 1.349541e-02	ci right 1.587581e-02	k: 586	n:40000
KS ci ratio: 1.556144e-02	ci left: 6.085571e-01	ci right 6.181265e-01	k: 24534	n:40000
PTPRS   40000 perm   10 sec   (3819 perm/sec)   p_kst 6.133500e-01   p_cons 1.465000e-02   p_joint 1.591250e-01

Joint ci ratio: 3.511185e-02	ci left: 1.960246e-01	ci right 2.030503e-01	k: 9976	n:50000
Cons ci ratio: 1.453402e-01	ci left: 1.329691e-02	ci right 1.540003e-02	k: 716	n:50000
KS ci ratio: 1.390896e-02	ci left: 6.093957e-01	ci right 6.179511e-01	k: 30684	n:50000
PTPRS   50000 perm   13 sec   (3778 perm/sec)   p_kst 6.136800e-01   p_cons 1.432000e-02   p_joint 1.995200e-01

Joint ci ratio: 3.542994e-02	ci left: 1.664394e-01	ci right 1.724593e-01	k: 10166	n:60000
Cons ci ratio: 1.317787e-01	ci left: 1.357483e-02	ci right 1.550588e-02	k: 871	n:60000
KS ci ratio: 1.268410e-02	ci left: 6.102578e-01	ci right 6.180645e-01	k: 36850	n:60000
PTPRS   60000 perm   16 sec   (3733 perm/sec)   p_kst 6.141667e-01   p_cons 1.451667e-02   p_joint 1.694333e-01

Joint ci ratio: 2.943272e-02	ci left: 1.991873e-01	ci right 2.051517e-01	k: 14151	n:70000
Cons ci ratio: 1.231343e-01	ci left: 1.339197e-02	ci right 1.516291e-02	k: 998	n:70000
KS ci ratio: 1.173214e-02	ci left: 6.109971e-01	ci right 6.182220e-01	k: 43023	n:70000
PTPRS   70000 perm   19 sec   (3687 perm/sec)   p_kst 6.146143e-01   p_cons 1.425714e-02   p_joint 2.021571e-01

Joint ci ratio: 2.665709e-02	ci left: 2.099432e-01	ci right 2.156277e-01	k: 17022	n:80000
Cons ci ratio: 1.162037e-01	ci left: 1.320940e-02	ci right 1.485112e-02	k: 1121	n:80000
KS ci ratio: 1.098606e-02	ci left: 6.107288e-01	ci right 6.174879e-01	k: 49129	n:80000
PTPRS   80000 perm   22 sec   (3641 perm/sec)   p_kst 6.141125e-01   p_cons 1.401250e-02   p_joint 2.127750e-01

Joint ci ratio: 2.478023e-02	ci left: 2.148526e-01	ci right 2.202545e-01	k: 19579	n:90000
Cons ci ratio: 1.093495e-01	ci left: 1.330741e-02	ci right 1.485747e-02	k: 1266	n:90000
KS ci ratio: 1.036970e-02	ci left: 6.103763e-01	ci right 6.167497e-01	k: 55221	n:90000
PTPRS   90000 perm   25 sec   (3570 perm/sec)   p_kst 6.135667e-01   p_cons 1.406667e-02   p_joint 2.175444e-01

Joint ci ratio: 2.247697e-02	ci left: 2.305918e-01	ci right 2.358437e-01	k: 23321	n:100000
Cons ci ratio: 1.041432e-01	ci left: 1.324195e-02	ci right 1.470644e-02	k: 1396	n:100000
KS ci ratio: 9.829210e-03	ci left: 6.109443e-01	ci right 6.169891e-01	k: 61397	n:100000
PTPRS   100000 perm   28 sec   (3528 perm/sec)   p_kst 6.139700e-01   p_cons 1.396000e-02   p_joint 2.332100e-01

Joint ci ratio: 2.154334e-02	ci left: 2.288560e-01	ci right 2.338491e-01	k: 25448	n:110000
Cons ci ratio: 9.948395e-02	ci left: 1.322530e-02	ci right 1.461869e-02	k: 1530	n:110000
KS ci ratio: 9.377491e-03	ci left: 6.107969e-01	ci right 6.165607e-01	k: 67505	n:110000
PTPRS   110000 perm   32 sec   (3488 perm/sec)   p_kst 6.136818e-01   p_cons 1.390909e-02   p_joint 2.313455e-01

Outputting figure to mutsig2_images.part000000000141/PTPRS.3_5995_110000_0.61368_0.013909_0.23135.png
                gene_name: PTPRS
               theta_stop: 0.099 
                    nperm: 110000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.014 
      ci_cons_bounds_left: 0.013 
     ci_cons_bounds_right: 0.015 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.23 

Current progress: 56 percent done.
PTRF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.184476e-02	ci left: 2.210904e-01	ci right 2.376675e-01	k: 2293	n:10000
Cons ci ratio: 5.213117e-02	ci left: 3.516775e-01	ci right 3.706035e-01	k: 3611	n:10000
KS ci ratio: 9.871639e-02	ci left: 1.294361e-01	ci right 1.429766e-01	k: 1361	n:10000
PTRF   10000 perm   2 sec   (6061 perm/sec)   p_kst 1.361000e-01   p_cons 3.611000e-01   p_joint 2.293000e-01

Outputting figure to mutsig2_images.part000000000141/PTRF.3_1181_10000_0.1361_0.3611_0.2293.png
                gene_name: PTRF
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 58 percent done.
PUS10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.731428e-02	ci left: 3.094718e-01	ci right 3.278340e-01	k: 3186	n:10000
Cons ci ratio: 6.822271e-02	ci left: 2.396590e-01	ci right 2.566879e-01	k: 2481	n:10000
KS ci ratio: 7.264646e-02	ci left: 2.172413e-01	ci right 2.337190e-01	k: 2254	n:10000
PUS10   10000 perm   2 sec   (5081 perm/sec)   p_kst 2.254000e-01   p_cons 2.481000e-01   p_joint 3.186000e-01

Outputting figure to mutsig2_images.part000000000141/PUS10.3_1658_10000_0.2254_0.2481_0.3186.png
                gene_name: PUS10
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 60 percent done.
PUS7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.331969e-02	ci left: 7.298693e-01	ci right 7.471916e-01	k: 7386	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
PUS7   10000 perm   2 sec   (6010 perm/sec)   p_kst 1   p_cons 7.386000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000141/PUS7.3_2046_10000_1_0.7386_1.png
                gene_name: PUS7
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
PUS7L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.763418e-02	ci left: 5.104535e-01	ci right 5.301346e-01	k: 5203	n:10000
Cons ci ratio: 8.415012e-02	ci left: 1.707441e-01	ci right 1.858438e-01	k: 1782	n:10000
KS ci ratio: 2.026603e-02	ci left: 7.809707e-01	ci right 7.970605e-01	k: 7891	n:10000
PUS7L   10000 perm   2 sec   (5319 perm/sec)   p_kst 7.891000e-01   p_cons 1.782000e-01   p_joint 5.203000e-01

Outputting figure to mutsig2_images.part000000000141/PUS7L.3_2138_10000_0.7891_0.1782_0.5203.png
                gene_name: PUS7L
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 65 percent done.
PUSL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.365790e-02	ci left: 7.242122e-01	ci right 7.416519e-01	k: 7330	n:10000
Cons ci ratio: 4.563429e-02	ci left: 4.147857e-01	ci right 4.342583e-01	k: 4245	n:10000
KS ci ratio: 2.155724e-02	ci left: 7.593970e-01	ci right 7.760468e-01	k: 7678	n:10000
PUSL1   10000 perm   2 sec   (6642 perm/sec)   p_kst 7.678000e-01   p_cons 4.245000e-01   p_joint 7.330000e-01

Outputting figure to mutsig2_images.part000000000141/PUSL1.3_944_10000_0.7678_0.4245_0.733.png
                gene_name: PUSL1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 67 percent done.
PVRL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.325116e-02	ci left: 2.686408e-01	ci right 2.862890e-01	k: 2774	n:10000
Cons ci ratio: 7.258412e-02	ci left: 2.175373e-01	ci right 2.340227e-01	k: 2257	n:10000
KS ci ratio: 7.752686e-02	ci left: 1.956464e-01	ci right 2.115267e-01	k: 2035	n:10000
PVRL1   10000 perm   2 sec   (5193 perm/sec)   p_kst 2.035000e-01   p_cons 2.257000e-01   p_joint 2.774000e-01

Outputting figure to mutsig2_images.part000000000141/PVRL1.3_2024_10000_0.2035_0.2257_0.2774.png
                gene_name: PVRL1
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 69 percent done.
PVRL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.309380e-02	ci left: 2.696308e-01	ci right 2.872985e-01	k: 2784	n:10000
Cons ci ratio: 8.928483e-02	ci left: 1.543368e-01	ci right 1.688609e-01	k: 1615	n:10000
KS ci ratio: 3.041308e-02	ci left: 6.146223e-01	ci right 6.337054e-01	k: 6242	n:10000
PVRL3   10000 perm   2 sec   (5569 perm/sec)   p_kst 6.242000e-01   p_cons 1.615000e-01   p_joint 2.784000e-01

Outputting figure to mutsig2_images.part000000000141/PVRL3.3_1674_10000_0.6242_0.1615_0.2784.png
                gene_name: PVRL3
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 71 percent done.
PWP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.656160e-02	ci left: 4.050199e-01	ci right 4.244298e-01	k: 4147	n:10000
Cons ci ratio: 1.079470e-01	ci left: 1.101767e-01	ci right 1.228477e-01	k: 1164	n:10000
KS ci ratio: 2.762719e-02	ci left: 6.587727e-01	ci right 6.773293e-01	k: 6681	n:10000
PWP2   10000 perm   2 sec   (5633 perm/sec)   p_kst 6.681000e-01   p_cons 1.164000e-01   p_joint 4.147000e-01

Joint ci ratio: 2.954779e-02	ci left: 4.611147e-01	ci right 4.749946e-01	k: 9361	n:20000
Cons ci ratio: 7.785220e-02	ci left: 1.081032e-01	ci right 1.169098e-01	k: 2249	n:20000
KS ci ratio: 1.937115e-02	ci left: 6.652930e-01	ci right 6.783570e-01	k: 13437	n:20000
PWP2   20000 perm   4 sec   (5071 perm/sec)   p_kst 6.718500e-01   p_cons 1.124500e-01   p_joint 4.680500e-01

Outputting figure to mutsig2_images.part000000000141/PWP2.3_2844_20000_0.67185_0.11245_0.46805.png
                gene_name: PWP2
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.47 

Current progress: 73 percent done.
PWWP2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.730302e-02	ci left: 2.447000e-01	ci right 2.618439e-01	k: 2532	n:10000
Cons ci ratio: 1.213381e-01	ci left: 8.873809e-02	ci right 1.002994e-01	k: 944	n:10000
KS ci ratio: 1.119938e-02	ci left: 9.192503e-01	ci right 9.297008e-01	k: 9246	n:10000
PWWP2B   10000 perm   2 sec   (6031 perm/sec)   p_kst 9.246000e-01   p_cons 9.440000e-02   p_joint 2.532000e-01

Joint ci ratio: 4.323447e-02	ci left: 2.849590e-01	ci right 2.976017e-01	k: 5825	n:20000
Cons ci ratio: 8.535257e-02	ci left: 9.131366e-02	ci right 9.950440e-02	k: 1907	n:20000
KS ci ratio: 8.016224e-03	ci left: 9.190652e-01	ci right 9.265113e-01	k: 18457	n:20000
PWWP2B   20000 perm   4 sec   (5393 perm/sec)   p_kst 9.228500e-01   p_cons 9.535000e-02   p_joint 2.912500e-01

Outputting figure to mutsig2_images.part000000000141/PWWP2B.3_1799_20000_0.92285_0.09535_0.29125.png
                gene_name: PWWP2B
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.095 
      ci_cons_bounds_left: 0.091 
     ci_cons_bounds_right: 0.100 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 75 percent done.
PXK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.081832e-02	ci left: 2.844871e-01	ci right 3.024334e-01	k: 2934	n:10000
Cons ci ratio: 3.078365e-02	ci left: 6.088960e-01	ci right 6.280350e-01	k: 6185	n:10000
KS ci ratio: 8.991607e-02	ci left: 1.524718e-01	ci right 1.669270e-01	k: 1596	n:10000
PXK   10000 perm   2 sec   (6260 perm/sec)   p_kst 1.596000e-01   p_cons 6.185000e-01   p_joint 2.934000e-01

Outputting figure to mutsig2_images.part000000000141/PXK.3_1809_10000_0.1596_0.6185_0.2934.png
                gene_name: PXK
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 77 percent done.
PXN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.143030e-02	ci left: 7.615226e-01	ci right 7.781199e-01	k: 7699	n:10000
Cons ci ratio: 1.961910e-02	ci left: 7.917190e-01	ci right 8.075061e-01	k: 7997	n:10000
KS ci ratio: 3.946150e-02	ci left: 4.867526e-01	ci right 5.064494e-01	k: 4966	n:10000
PXN   10000 perm   2 sec   (6573 perm/sec)   p_kst 4.966000e-01   p_cons 7.997000e-01   p_joint 7.699000e-01

Outputting figure to mutsig2_images.part000000000141/PXN.3_1824_10000_0.4966_0.7997_0.7699.png
                gene_name: PXN
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 79 percent done.
PYGL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.752551e+00	ci left: 1.089969e-04	ci right 1.023839e-03	k: 4	n:10000
Cons ci ratio: 1.671391e-02	ci left: 8.389786e-01	ci right 8.532191e-01	k: 8462	n:10000
KS ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
PYGL   10000 perm   2 sec   (4530 perm/sec)   p_kst 1.000000e-04   p_cons 8.462000e-01   p_joint 4.000000e-04

Joint ci ratio: 1.600053e+00	ci left: 8.117914e-05	ci right 5.833193e-04	k: 5	n:20000
Cons ci ratio: 1.181783e-02	ci left: 8.411250e-01	ci right 8.511742e-01	k: 16924	n:20000
KS ci ratio: 2.771651e+00	ci left: 1.265890e-06	ci right 2.785503e-04	k: 1	n:20000
PYGL   20000 perm   4 sec   (4513 perm/sec)   p_kst 5.000000e-05   p_cons 8.462000e-01   p_joint 2.500000e-04

Joint ci ratio: 1.959837e+00	ci left: 2.062288e-05	ci right 2.922143e-04	k: 3	n:30000
Cons ci ratio: 9.629260e-03	ci left: 8.426066e-01	ci right 8.507928e-01	k: 25402	n:30000
KS ci ratio: 2.771720e+00	ci left: 8.439266e-07	ci right 1.857073e-04	k: 1	n:30000
PYGL   30000 perm   7 sec   (4460 perm/sec)   p_kst 3.333333e-05   p_cons 8.467333e-01   p_joint 1.000000e-04

Joint ci ratio: 1.959878e+00	ci left: 1.546707e-05	ci right 2.191660e-04	k: 3	n:40000
Cons ci ratio: 8.237938e-03	ci left: 8.463367e-01	ci right 8.533624e-01	k: 33995	n:40000
KS ci ratio: 2.771755e+00	ci left: 6.329450e-07	ci right 1.392831e-04	k: 1	n:40000
PYGL   40000 perm   9 sec   (4401 perm/sec)   p_kst 2.500000e-05   p_cons 8.498750e-01   p_joint 7.500000e-05

Joint ci ratio: 1.959902e+00	ci left: 1.237361e-05	ci right 1.753353e-04	k: 3	n:50000
Cons ci ratio: 7.350137e-03	ci left: 8.473442e-01	ci right 8.536151e-01	k: 42525	n:50000
KS ci ratio: 2.771775e+00	ci left: 5.063560e-07	ci right 1.114278e-04	k: 1	n:50000
PYGL   50000 perm   12 sec   (4338 perm/sec)   p_kst 2.000000e-05   p_cons 8.505000e-01   p_joint 6.000000e-05

Joint ci ratio: 1.385825e+00	ci left: 4.690730e-05	ci right 2.403631e-04	k: 7	n:60000
Cons ci ratio: 6.730791e-03	ci left: 8.468153e-01	ci right 8.525508e-01	k: 50982	n:60000
KS ci ratio: 2.771789e+00	ci left: 4.219634e-07	ci right 9.285719e-05	k: 1	n:60000
PYGL   60000 perm   14 sec   (4278 perm/sec)   p_kst 1.666667e-05   p_cons 8.497000e-01   p_joint 1.166667e-04

Joint ci ratio: 1.306573e+00	ci left: 4.934171e-05	ci right 2.251759e-04	k: 8	n:70000
Cons ci ratio: 6.235316e-03	ci left: 8.468727e-01	ci right 8.521840e-01	k: 59468	n:70000
KS ci ratio: 2.771799e+00	ci left: 3.616829e-07	ci right 7.959231e-05	k: 1	n:70000
PYGL   70000 perm   17 sec   (4220 perm/sec)   p_kst 1.428571e-05   p_cons 8.495429e-01   p_joint 1.142857e-04

Joint ci ratio: 1.385851e+00	ci left: 3.518024e-05	ci right 1.802751e-04	k: 7	n:80000
Cons ci ratio: 5.814736e-03	ci left: 8.478339e-01	ci right 8.527906e-01	k: 68026	n:80000
KS ci ratio: 1.385851e+00	ci left: 3.518024e-05	ci right 1.802751e-04	k: 7	n:80000
PYGL   80000 perm   19 sec   (4154 perm/sec)   p_kst 8.750000e-05   p_cons 8.503250e-01   p_joint 8.750000e-05

Joint ci ratio: 7.542870e-01	ci left: 1.887202e-04	ci right 4.232607e-04	k: 26	n:90000
Cons ci ratio: 5.475535e-03	ci left: 8.482877e-01	ci right 8.529563e-01	k: 76557	n:90000
KS ci ratio: 1.306594e+00	ci left: 3.837667e-05	ci right 1.751390e-04	k: 8	n:90000
PYGL   90000 perm   22 sec   (4089 perm/sec)   p_kst 8.888889e-05   p_cons 8.506333e-01   p_joint 2.888889e-04

Joint ci ratio: 7.155799e-01	ci left: 1.942259e-04	ci right 4.164620e-04	k: 29	n:100000
Cons ci ratio: 5.206255e-03	ci left: 8.478321e-01	ci right 8.522676e-01	k: 85006	n:100000
KS ci ratio: 1.239545e+00	ci left: 4.115453e-05	ci right 1.708411e-04	k: 9	n:100000
PYGL   100000 perm   25 sec   (4026 perm/sec)   p_kst 9.000000e-05   p_cons 8.500600e-01   p_joint 2.900000e-04

Joint ci ratio: 6.928607e-01	ci left: 1.914896e-04	ci right 3.999948e-04	k: 31	n:110000
Cons ci ratio: 4.967787e-03	ci left: 8.477390e-01	ci right 8.519698e-01	k: 93485	n:110000
KS ci ratio: 1.181860e+00	ci left: 4.359528e-05	ci right 1.671787e-04	k: 10	n:110000
PYGL   110000 perm   28 sec   (3966 perm/sec)   p_kst 9.090909e-05   p_cons 8.498636e-01   p_joint 2.818182e-04

Joint ci ratio: 1.131545e+00	ci left: 4.576053e-05	ci right 1.640111e-04	k: 11	n:120000
Cons ci ratio: 4.747066e-03	ci left: 8.483274e-01	ci right 8.523723e-01	k: 102043	n:120000
KS ci ratio: 1.131545e+00	ci left: 4.576053e-05	ci right 1.640111e-04	k: 11	n:120000
PYGL   120000 perm   31 sec   (3919 perm/sec)   p_kst 9.166667e-05   p_cons 8.503583e-01   p_joint 9.166667e-05

Joint ci ratio: 1.047604e+00	ci left: 5.324683e-05	ci right 1.709970e-04	k: 13	n:130000
Cons ci ratio: 4.558842e-03	ci left: 8.485190e-01	ci right 8.524038e-01	k: 110561	n:130000
KS ci ratio: 1.047604e+00	ci left: 5.324683e-05	ci right 1.709970e-04	k: 13	n:130000
PYGL   130000 perm   34 sec   (3872 perm/sec)   p_kst 1.000000e-04   p_cons 8.504692e-01   p_joint 1.000000e-04

Joint ci ratio: 9.506785e-01	ci left: 6.532553e-05	ci right 1.855862e-04	k: 16	n:140000
Cons ci ratio: 4.381490e-03	ci left: 8.492603e-01	ci right 8.529966e-01	k: 119159	n:140000
KS ci ratio: 9.506785e-01	ci left: 6.532553e-05	ci right 1.855862e-04	k: 16	n:140000
PYGL   140000 perm   37 sec   (3824 perm/sec)   p_kst 1.142857e-04   p_cons 8.511357e-01   p_joint 1.142857e-04

Joint ci ratio: 9.238943e-01	ci left: 6.602218e-05	ci right 1.814515e-04	k: 17	n:150000
Cons ci ratio: 4.234295e-03	ci left: 8.492415e-01	ci right 8.528516e-01	k: 127658	n:150000
KS ci ratio: 9.238943e-01	ci left: 6.602218e-05	ci right 1.814515e-04	k: 17	n:150000
PYGL   150000 perm   40 sec   (3752 perm/sec)   p_kst 1.133333e-04   p_cons 8.510533e-01   p_joint 1.133333e-04

Joint ci ratio: 8.992535e-01	ci left: 6.667595e-05	ci right 1.777927e-04	k: 18	n:160000
Cons ci ratio: 4.095543e-03	ci left: 8.495660e-01	ci right 8.530588e-01	k: 136211	n:160000
KS ci ratio: 8.992535e-01	ci left: 6.667595e-05	ci right 1.777927e-04	k: 18	n:160000
PYGL   160000 perm   43 sec   (3701 perm/sec)   p_kst 1.125000e-04   p_cons 8.513188e-01   p_joint 1.125000e-04

Joint ci ratio: 8.992568e-01	ci left: 6.275376e-05	ci right 1.673346e-04	k: 18	n:170000
Cons ci ratio: 3.971337e-03	ci left: 8.497416e-01	ci right 8.531288e-01	k: 144745	n:170000
KS ci ratio: 8.992568e-01	ci left: 6.275376e-05	ci right 1.673346e-04	k: 18	n:170000
PYGL   170000 perm   47 sec   (3654 perm/sec)   p_kst 1.058824e-04   p_cons 8.514412e-01   p_joint 1.058824e-04

Joint ci ratio: 8.553619e-01	ci left: 6.787083e-05	ci right 1.715969e-04	k: 20	n:180000
Cons ci ratio: 3.861174e-03	ci left: 8.496758e-01	ci right 8.529684e-01	k: 153239	n:180000
KS ci ratio: 8.553619e-01	ci left: 6.787083e-05	ci right 1.715969e-04	k: 20	n:180000
PYGL   180000 perm   50 sec   (3610 perm/sec)   p_kst 1.111111e-04   p_cons 8.513278e-01   p_joint 1.111111e-04

Joint ci ratio: 8.553646e-01	ci left: 6.429862e-05	ci right 1.625658e-04	k: 20	n:190000
Cons ci ratio: 3.755789e-03	ci left: 8.498825e-01	ci right 8.530857e-01	k: 161783	n:190000
KS ci ratio: 8.553646e-01	ci left: 6.429862e-05	ci right 1.625658e-04	k: 20	n:190000
PYGL   190000 perm   53 sec   (3554 perm/sec)   p_kst 1.052632e-04   p_cons 8.514895e-01   p_joint 1.052632e-04

Joint ci ratio: 8.173275e-01	ci left: 6.893766e-05	ci right 1.665366e-04	k: 22	n:200000
Cons ci ratio: 3.662273e-03	ci left: 8.498135e-01	ci right 8.529364e-01	k: 170276	n:200000
KS ci ratio: 8.173275e-01	ci left: 6.893766e-05	ci right 1.665366e-04	k: 22	n:200000
PYGL   200000 perm   57 sec   (3515 perm/sec)   p_kst 1.100000e-04   p_cons 8.513800e-01   p_joint 1.100000e-04

Joint ci ratio: 8.001190e-01	ci left: 6.942993e-05	ci right 1.643350e-04	k: 23	n:210000
Cons ci ratio: 3.566934e-03	ci left: 8.503545e-01	ci right 8.533977e-01	k: 178895	n:210000
KS ci ratio: 8.001190e-01	ci left: 6.942993e-05	ci right 1.643350e-04	k: 23	n:210000
PYGL   210000 perm   61 sec   (3462 perm/sec)   p_kst 1.095238e-04   p_cons 8.518810e-01   p_joint 1.095238e-04

Joint ci ratio: 8.001212e-01	ci left: 6.627397e-05	ci right 1.568654e-04	k: 23	n:220000
Cons ci ratio: 3.480517e-03	ci left: 8.507101e-01	ci right 8.536806e-01	k: 187484	n:220000
KS ci ratio: 8.001212e-01	ci left: 6.627397e-05	ci right 1.568654e-04	k: 23	n:220000
PYGL   220000 perm   64 sec   (3424 perm/sec)   p_kst 1.045455e-04   p_cons 8.522000e-01   p_joint 1.045455e-04

Joint ci ratio: 7.839557e-01	ci left: 6.685873e-05	ci right 1.552573e-04	k: 24	n:230000
Cons ci ratio: 3.402425e-03	ci left: 8.508608e-01	ci right 8.537651e-01	k: 196033	n:230000
KS ci ratio: 7.839557e-01	ci left: 6.685873e-05	ci right 1.552573e-04	k: 24	n:230000
PYGL   230000 perm   68 sec   (3376 perm/sec)   p_kst 1.043478e-04   p_cons 8.523174e-01   p_joint 1.043478e-04

Joint ci ratio: 7.407656e-01	ci left: 7.413948e-05	ci right 1.636774e-04	k: 27	n:240000
Cons ci ratio: 3.330741e-03	ci left: 8.508951e-01	ci right 8.537381e-01	k: 204557	n:240000
KS ci ratio: 7.407656e-01	ci left: 7.413948e-05	ci right 1.636774e-04	k: 27	n:240000
PYGL   240000 perm   72 sec   (3341 perm/sec)   p_kst 1.125000e-04   p_cons 8.523208e-01   p_joint 1.125000e-04

Joint ci ratio: 7.156464e-01	ci left: 7.768835e-05	ci right 1.665911e-04	k: 29	n:250000
Cons ci ratio: 3.262627e-03	ci left: 8.509874e-01	ci right 8.537724e-01	k: 213096	n:250000
KS ci ratio: 7.156464e-01	ci left: 7.768835e-05	ci right 1.665911e-04	k: 29	n:250000
PYGL   250000 perm   76 sec   (3306 perm/sec)   p_kst 1.160000e-04   p_cons 8.523840e-01   p_joint 1.160000e-04

Joint ci ratio: 7.156481e-01	ci left: 7.470029e-05	ci right 1.601839e-04	k: 29	n:260000
Cons ci ratio: 3.201216e-03	ci left: 8.508609e-01	ci right 8.535928e-01	k: 221580	n:260000
KS ci ratio: 7.156481e-01	ci left: 7.470029e-05	ci right 1.601839e-04	k: 29	n:260000
PYGL   260000 perm   79 sec   (3271 perm/sec)   p_kst 1.115385e-04   p_cons 8.522308e-01   p_joint 1.115385e-04

Joint ci ratio: 7.040111e-01	ci left: 7.496742e-05	ci right 1.586143e-04	k: 30	n:270000
Cons ci ratio: 3.142543e-03	ci left: 8.507925e-01	ci right 8.534740e-01	k: 230077	n:270000
KS ci ratio: 7.040111e-01	ci left: 7.496742e-05	ci right 1.586143e-04	k: 30	n:270000
PYGL   270000 perm   83 sec   (3237 perm/sec)   p_kst 1.111111e-04   p_cons 8.521370e-01   p_joint 1.111111e-04

Joint ci ratio: 6.929238e-01	ci left: 7.522619e-05	ci right 1.571464e-04	k: 31	n:280000
Cons ci ratio: 3.087900e-03	ci left: 8.506542e-01	ci right 8.532885e-01	k: 238553	n:280000
KS ci ratio: 6.929238e-01	ci left: 7.522619e-05	ci right 1.571464e-04	k: 31	n:280000
PYGL   280000 perm   87 sec   (3203 perm/sec)   p_kst 1.107143e-04   p_cons 8.519750e-01   p_joint 1.107143e-04

Joint ci ratio: 6.722339e-01	ci left: 7.833119e-05	ci right 1.598041e-04	k: 33	n:290000
Cons ci ratio: 3.033435e-03	ci left: 8.507404e-01	ci right 8.533284e-01	k: 247091	n:290000
KS ci ratio: 6.722339e-01	ci left: 7.833119e-05	ci right 1.598041e-04	k: 33	n:290000
PYGL   290000 perm   91 sec   (3170 perm/sec)   p_kst 1.137931e-04   p_cons 8.520379e-01   p_joint 1.137931e-04

Joint ci ratio: 6.532930e-01	ci left: 8.126391e-05	ci right 1.622514e-04	k: 35	n:300000
Cons ci ratio: 2.983174e-03	ci left: 8.507008e-01	ci right 8.532457e-01	k: 255593	n:300000
KS ci ratio: 6.532930e-01	ci left: 8.126391e-05	ci right 1.622514e-04	k: 35	n:300000
PYGL   300000 perm   96 sec   (3137 perm/sec)   p_kst 1.166667e-04   p_cons 8.519767e-01   p_joint 1.166667e-04

Joint ci ratio: 6.276619e-01	ci left: 8.674677e-05	ci right 1.682477e-04	k: 38	n:310000
Cons ci ratio: 2.933191e-03	ci left: 8.508487e-01	ci right 8.533512e-01	k: 264152	n:310000
KS ci ratio: 6.276619e-01	ci left: 8.674677e-05	ci right 1.682477e-04	k: 38	n:310000
PYGL   310000 perm   100 sec   (3104 perm/sec)   p_kst 1.225806e-04   p_cons 8.521032e-01   p_joint 1.225806e-04

Joint ci ratio: 5.843171e-01	ci left: 9.990943e-05	ci right 1.845830e-04	k: 44	n:320000
Cons ci ratio: 2.888034e-03	ci left: 8.507775e-01	ci right 8.532412e-01	k: 272644	n:320000
KS ci ratio: 5.843171e-01	ci left: 9.990943e-05	ci right 1.845830e-04	k: 44	n:320000
PYGL   320000 perm   104 sec   (3072 perm/sec)   p_kst 1.375000e-04   p_cons 8.520125e-01   p_joint 1.375000e-04

Joint ci ratio: 5.843184e-01	ci left: 9.688182e-05	ci right 1.789897e-04	k: 44	n:330000
Cons ci ratio: 2.845242e-03	ci left: 8.506805e-01	ci right 8.531073e-01	k: 281126	n:330000
KS ci ratio: 5.843184e-01	ci left: 9.688182e-05	ci right 1.789897e-04	k: 44	n:330000
PYGL   330000 perm   109 sec   (3041 perm/sec)   p_kst 1.333333e-04   p_cons 8.518970e-01   p_joint 1.333333e-04

Joint ci ratio: 5.843196e-01	ci left: 9.403231e-05	ci right 1.737254e-04	k: 44	n:340000
Cons ci ratio: 2.801910e-03	ci left: 8.508049e-01	ci right 8.531950e-01	k: 289681	n:340000
KS ci ratio: 5.843196e-01	ci left: 9.403231e-05	ci right 1.737254e-04	k: 44	n:340000
PYGL   340000 perm   113 sec   (3009 perm/sec)   p_kst 1.294118e-04   p_cons 8.520029e-01   p_joint 1.294118e-04

Joint ci ratio: 5.843207e-01	ci left: 9.134563e-05	ci right 1.687619e-04	k: 44	n:350000
Cons ci ratio: 2.760342e-03	ci left: 8.509368e-01	ci right 8.532917e-01	k: 298241	n:350000
KS ci ratio: 5.843207e-01	ci left: 9.134563e-05	ci right 1.687619e-04	k: 44	n:350000
PYGL   350000 perm   118 sec   (2978 perm/sec)   p_kst 1.257143e-04   p_cons 8.521171e-01   p_joint 1.257143e-04

Joint ci ratio: 5.843218e-01	ci left: 8.880821e-05	ci right 1.640742e-04	k: 44	n:360000
Cons ci ratio: 2.722249e-03	ci left: 8.509055e-01	ci right 8.532277e-01	k: 306745	n:360000
KS ci ratio: 5.843218e-01	ci left: 8.880821e-05	ci right 1.640742e-04	k: 44	n:360000
PYGL   360000 perm   122 sec   (2947 perm/sec)   p_kst 1.222222e-04   p_cons 8.520694e-01   p_joint 1.222222e-04

Joint ci ratio: 5.779358e-01	ci left: 8.871299e-05	ci right 1.627360e-04	k: 45	n:370000
Cons ci ratio: 2.686151e-03	ci left: 8.508327e-01	ci right 8.531239e-01	k: 315233	n:370000
KS ci ratio: 5.779358e-01	ci left: 8.871299e-05	ci right 1.627360e-04	k: 45	n:370000
PYGL   370000 perm   127 sec   (2917 perm/sec)   p_kst 1.216216e-04   p_cons 8.519811e-01   p_joint 1.216216e-04

Joint ci ratio: 5.717547e-01	ci left: 8.862706e-05	ci right 1.614640e-04	k: 46	n:380000
Cons ci ratio: 2.649183e-03	ci left: 8.509805e-01	ci right 8.532405e-01	k: 323803	n:380000
KS ci ratio: 5.717547e-01	ci left: 8.862706e-05	ci right 1.614640e-04	k: 46	n:380000
PYGL   380000 perm   132 sec   (2888 perm/sec)   p_kst 1.210526e-04   p_cons 8.521132e-01   p_joint 1.210526e-04

Joint ci ratio: 5.657677e-01	ci left: 8.854959e-05	ci right 1.602533e-04	k: 47	n:390000
Cons ci ratio: 2.615188e-03	ci left: 8.509768e-01	ci right 8.532077e-01	k: 332317	n:390000
KS ci ratio: 5.657677e-01	ci left: 8.854959e-05	ci right 1.602533e-04	k: 47	n:390000
PYGL   390000 perm   136 sec   (2860 perm/sec)   p_kst 1.205128e-04   p_cons 8.520949e-01   p_joint 1.205128e-04

Joint ci ratio: 5.599650e-01	ci left: 8.847981e-05	ci right 1.590995e-04	k: 48	n:400000
Cons ci ratio: 2.582469e-03	ci left: 8.509735e-01	ci right 8.531764e-01	k: 340831	n:400000
KS ci ratio: 5.599650e-01	ci left: 8.847981e-05	ci right 1.590995e-04	k: 48	n:400000
PYGL   400000 perm   141 sec   (2831 perm/sec)   p_kst 1.200000e-04   p_cons 8.520775e-01   p_joint 1.200000e-04

Joint ci ratio: 5.435711e-01	ci left: 9.261807e-05	ci right 1.635470e-04	k: 51	n:410000
Cons ci ratio: 2.552502e-03	ci left: 8.508164e-01	ci right 8.529933e-01	k: 349282	n:410000
KS ci ratio: 5.435711e-01	ci left: 9.261807e-05	ci right 1.635470e-04	k: 51	n:410000
PYGL   410000 perm   146 sec   (2803 perm/sec)   p_kst 1.243902e-04   p_cons 8.519073e-01   p_joint 1.243902e-04

Joint ci ratio: 5.334095e-01	ci left: 9.452671e-05	ci right 1.650570e-04	k: 53	n:420000
Cons ci ratio: 2.522552e-03	ci left: 8.507672e-01	ci right 8.529184e-01	k: 357775	n:420000
KS ci ratio: 5.334095e-01	ci left: 9.452671e-05	ci right 1.650570e-04	k: 53	n:420000
PYGL   420000 perm   151 sec   (2776 perm/sec)   p_kst 1.261905e-04   p_cons 8.518452e-01   p_joint 1.261905e-04

Joint ci ratio: 5.237973e-01	ci left: 9.635845e-05	ci right 1.664853e-04	k: 55	n:430000
Cons ci ratio: 2.493908e-03	ci left: 8.506925e-01	ci right 8.528190e-01	k: 366256	n:430000
KS ci ratio: 5.237973e-01	ci left: 9.635845e-05	ci right 1.664853e-04	k: 55	n:430000
PYGL   430000 perm   156 sec   (2749 perm/sec)   p_kst 1.279070e-04   p_cons 8.517581e-01   p_joint 1.279070e-04

Joint ci ratio: 5.146867e-01	ci left: 9.811789e-05	ci right 1.678379e-04	k: 57	n:440000
Cons ci ratio: 2.466572e-03	ci left: 8.505849e-01	ci right 8.526877e-01	k: 374721	n:440000
KS ci ratio: 5.146867e-01	ci left: 9.811789e-05	ci right 1.678379e-04	k: 57	n:440000
PYGL   440000 perm   162 sec   (2722 perm/sec)   p_kst 1.295455e-04   p_cons 8.516386e-01   p_joint 1.295455e-04

Joint ci ratio: 5.146875e-01	ci left: 9.593746e-05	ci right 1.641083e-04	k: 57	n:450000
Cons ci ratio: 2.439727e-03	ci left: 8.505223e-01	ci right 8.526021e-01	k: 383204	n:450000
KS ci ratio: 5.146875e-01	ci left: 9.593746e-05	ci right 1.641083e-04	k: 57	n:450000
PYGL   450000 perm   167 sec   (2696 perm/sec)   p_kst 1.266667e-04   p_cons 8.515644e-01   p_joint 1.266667e-04

Joint ci ratio: 5.146882e-01	ci left: 9.385184e-05	ci right 1.605408e-04	k: 57	n:460000
Cons ci ratio: 2.412723e-03	ci left: 8.505694e-01	ci right 8.526262e-01	k: 391736	n:460000
KS ci ratio: 5.146882e-01	ci left: 9.385184e-05	ci right 1.605408e-04	k: 57	n:460000
PYGL   460000 perm   172 sec   (2670 perm/sec)   p_kst 1.239130e-04   p_cons 8.516000e-01   p_joint 1.239130e-04

Joint ci ratio: 5.103080e-01	ci left: 9.370732e-05	ci right 1.595257e-04	k: 58	n:470000
Cons ci ratio: 2.386636e-03	ci left: 8.506103e-01	ci right 8.526449e-01	k: 400266	n:470000
KS ci ratio: 5.103080e-01	ci left: 9.370732e-05	ci right 1.595257e-04	k: 58	n:470000
PYGL   470000 perm   178 sec   (2645 perm/sec)   p_kst 1.234043e-04   p_cons 8.516298e-01   p_joint 1.234043e-04

Joint ci ratio: 5.060377e-01	ci left: 9.357114e-05	ci right 1.585507e-04	k: 59	n:480000
Cons ci ratio: 2.361027e-03	ci left: 8.506873e-01	ci right 8.527002e-01	k: 408814	n:480000
KS ci ratio: 5.060377e-01	ci left: 9.357114e-05	ci right 1.585507e-04	k: 59	n:480000
PYGL   480000 perm   183 sec   (2620 perm/sec)   p_kst 1.229167e-04   p_cons 8.516958e-01   p_joint 1.229167e-04

Joint ci ratio: 5.018728e-01	ci left: 9.344273e-05	ci right 1.576133e-04	k: 60	n:490000
Cons ci ratio: 2.335489e-03	ci left: 8.508410e-01	ci right 8.528324e-01	k: 417401	n:490000
KS ci ratio: 5.018728e-01	ci left: 9.344273e-05	ci right 1.576133e-04	k: 60	n:490000
PYGL   490000 perm   189 sec   (2595 perm/sec)   p_kst 1.224490e-04   p_cons 8.518388e-01   p_joint 1.224490e-04

Joint ci ratio: 5.018735e-01	ci left: 9.157385e-05	ci right 1.544611e-04	k: 60	n:500000
Cons ci ratio: 2.312554e-03	ci left: 8.507921e-01	ci right 8.527638e-01	k: 425890	n:500000
KS ci ratio: 5.018735e-01	ci left: 9.157385e-05	ci right 1.544611e-04	k: 60	n:500000
PYGL   500000 perm   195 sec   (2567 perm/sec)   p_kst 1.200000e-04   p_cons 8.517800e-01   p_joint 1.200000e-04

Joint ci ratio: 4.899688e-01	ci left: 9.492466e-05	ci right 1.580451e-04	k: 63	n:510000
Cons ci ratio: 2.289873e-03	ci left: 8.507904e-01	ci right 8.527428e-01	k: 434402	n:510000
KS ci ratio: 4.899688e-01	ci left: 9.492466e-05	ci right 1.580451e-04	k: 63	n:510000
PYGL   510000 perm   201 sec   (2536 perm/sec)   p_kst 1.235294e-04   p_cons 8.517686e-01   p_joint 1.235294e-04

Joint ci ratio: 4.861853e-01	ci left: 9.478548e-05	ci right 1.571638e-04	k: 64	n:520000
Cons ci ratio: 2.267604e-03	ci left: 8.508160e-01	ci right 8.527494e-01	k: 442928	n:520000
KS ci ratio: 4.861853e-01	ci left: 9.478548e-05	ci right 1.571638e-04	k: 64	n:520000
PYGL   520000 perm   207 sec   (2512 perm/sec)   p_kst 1.230769e-04   p_cons 8.517846e-01   p_joint 1.230769e-04

Joint ci ratio: 4.788735e-01	ci left: 9.631145e-05	ci right 1.584278e-04	k: 66	n:530000
Cons ci ratio: 2.246224e-03	ci left: 8.508122e-01	ci right 8.527273e-01	k: 451439	n:530000
KS ci ratio: 4.788735e-01	ci left: 9.631145e-05	ci right 1.584278e-04	k: 66	n:530000
PYGL   530000 perm   213 sec   (2487 perm/sec)   p_kst 1.245283e-04   p_cons 8.517717e-01   p_joint 1.245283e-04

Joint ci ratio: 4.718820e-01	ci left: 9.778769e-05	ci right 1.596384e-04	k: 68	n:540000
Cons ci ratio: 2.226075e-03	ci left: 8.507363e-01	ci right 8.526340e-01	k: 459911	n:540000
KS ci ratio: 4.718820e-01	ci left: 9.778769e-05	ci right 1.596384e-04	k: 68	n:540000
PYGL   540000 perm   219 sec   (2464 perm/sec)   p_kst 1.259259e-04   p_cons 8.516870e-01   p_joint 1.259259e-04

Joint ci ratio: 4.651880e-01	ci left: 9.921664e-05	ci right 1.607987e-04	k: 70	n:550000
Cons ci ratio: 2.205251e-03	ci left: 8.508017e-01	ci right 8.526818e-01	k: 468459	n:550000
KS ci ratio: 4.651880e-01	ci left: 9.921664e-05	ci right 1.607987e-04	k: 70	n:550000
PYGL   550000 perm   225 sec   (2441 perm/sec)   p_kst 1.272727e-04   p_cons 8.517436e-01   p_joint 1.272727e-04

Joint ci ratio: 4.619463e-01	ci left: 9.902198e-05	ci right 1.599203e-04	k: 71	n:560000
Cons ci ratio: 2.184814e-03	ci left: 8.508864e-01	ci right 8.527492e-01	k: 477019	n:560000
KS ci ratio: 4.619463e-01	ci left: 9.902198e-05	ci right 1.599203e-04	k: 71	n:560000
PYGL   560000 perm   231 sec   (2420 perm/sec)   p_kst 1.267857e-04   p_cons 8.518196e-01   p_joint 1.267857e-04

Joint ci ratio: 4.619468e-01	ci left: 9.728473e-05	ci right 1.571147e-04	k: 71	n:570000
Cons ci ratio: 2.165883e-03	ci left: 8.508574e-01	ci right 8.527040e-01	k: 485516	n:570000
KS ci ratio: 4.619468e-01	ci left: 9.728473e-05	ci right 1.571147e-04	k: 71	n:570000
PYGL   570000 perm   238 sec   (2398 perm/sec)   p_kst 1.245614e-04   p_cons 8.517825e-01   p_joint 1.245614e-04

Joint ci ratio: 4.587720e-01	ci left: 9.713151e-05	ci right 1.563287e-04	k: 72	n:580000
Cons ci ratio: 2.146718e-03	ci left: 8.509141e-01	ci right 8.527444e-01	k: 494062	n:580000
KS ci ratio: 4.587720e-01	ci left: 9.713151e-05	ci right 1.563287e-04	k: 72	n:580000
PYGL   580000 perm   244 sec   (2377 perm/sec)   p_kst 1.241379e-04   p_cons 8.518310e-01   p_joint 1.241379e-04

Joint ci ratio: 4.496255e-01	ci left: 9.998815e-05	ci right 1.593418e-04	k: 75	n:590000
Cons ci ratio: 2.177843e-03	ci left: 8.450221e-01	ci right 8.468661e-01	k: 499108	n:590000
KS ci ratio: 4.496255e-01	ci left: 9.998815e-05	ci right 1.593418e-04	k: 75	n:590000
PYGL   590000 perm   250 sec   (2357 perm/sec)   p_kst 1.271186e-04   p_cons 8.459458e-01   p_joint 1.271186e-04

Joint ci ratio: 4.466964e-01	ci left: 9.980018e-05	ci right 1.585397e-04	k: 76	n:600000
Cons ci ratio: 2.160066e-03	ci left: 8.449756e-01	ci right 8.468044e-01	k: 507535	n:600000
KS ci ratio: 4.466964e-01	ci left: 9.980018e-05	ci right 1.585397e-04	k: 76	n:600000
PYGL   600000 perm   257 sec   (2336 perm/sec)   p_kst 1.266667e-04   p_cons 8.458917e-01   p_joint 1.266667e-04

Joint ci ratio: 4.466969e-01	ci left: 9.816410e-05	ci right 1.559407e-04	k: 76	n:610000
Cons ci ratio: 2.142596e-03	ci left: 8.449455e-01	ci right 8.467594e-01	k: 515971	n:610000
KS ci ratio: 4.466969e-01	ci left: 9.816410e-05	ci right 1.559407e-04	k: 76	n:610000
PYGL   610000 perm   264 sec   (2315 perm/sec)   p_kst 1.245902e-04   p_cons 8.458541e-01   p_joint 1.245902e-04

Joint ci ratio: 4.466974e-01	ci left: 9.658078e-05	ci right 1.534256e-04	k: 76	n:620000
Cons ci ratio: 2.125464e-03	ci left: 8.449261e-01	ci right 8.467255e-01	k: 524413	n:620000
KS ci ratio: 4.466974e-01	ci left: 9.658078e-05	ci right 1.534256e-04	k: 76	n:620000
PYGL   620000 perm   270 sec   (2294 perm/sec)   p_kst 1.225806e-04   p_cons 8.458274e-01   p_joint 1.225806e-04

Joint ci ratio: 4.466978e-01	ci left: 9.504774e-05	ci right 1.509903e-04	k: 76	n:630000
Cons ci ratio: 2.108339e-03	ci left: 8.449568e-01	ci right 8.467416e-01	k: 532886	n:630000
KS ci ratio: 4.466978e-01	ci left: 9.504774e-05	ci right 1.509903e-04	k: 76	n:630000
PYGL   630000 perm   277 sec   (2274 perm/sec)   p_kst 1.206349e-04   p_cons 8.458508e-01   p_joint 1.206349e-04

Joint ci ratio: 4.466982e-01	ci left: 9.356260e-05	ci right 1.486311e-04	k: 76	n:640000
Cons ci ratio: 2.091395e-03	ci left: 8.450147e-01	ci right 8.467853e-01	k: 541377	n:640000
KS ci ratio: 4.466982e-01	ci left: 9.356260e-05	ci right 1.486311e-04	k: 76	n:640000
PYGL   640000 perm   284 sec   (2255 perm/sec)   p_kst 1.187500e-04   p_cons 8.459016e-01   p_joint 1.187500e-04

Joint ci ratio: 4.438256e-01	ci left: 9.348909e-05	ci right 1.480544e-04	k: 77	n:650000
Cons ci ratio: 2.074890e-03	ci left: 8.450662e-01	ci right 8.468230e-01	k: 549865	n:650000
KS ci ratio: 4.438256e-01	ci left: 9.348909e-05	ci right 1.480544e-04	k: 77	n:650000
PYGL   650000 perm   291 sec   (2237 perm/sec)   p_kst 1.184615e-04   p_cons 8.459462e-01   p_joint 1.184615e-04

Joint ci ratio: 4.438260e-01	ci left: 9.207257e-05	ci right 1.458112e-04	k: 77	n:660000
Cons ci ratio: 2.058662e-03	ci left: 8.451300e-01	ci right 8.468731e-01	k: 558362	n:660000
KS ci ratio: 4.438260e-01	ci left: 9.207257e-05	ci right 1.458112e-04	k: 77	n:660000
PYGL   660000 perm   297 sec   (2220 perm/sec)   p_kst 1.166667e-04   p_cons 8.460030e-01   p_joint 1.166667e-04

Joint ci ratio: 4.382428e-01	ci left: 9.335189e-05	ci right 1.469495e-04	k: 79	n:670000
Cons ci ratio: 2.042984e-03	ci left: 8.451694e-01	ci right 8.468993e-01	k: 566844	n:670000
KS ci ratio: 4.382428e-01	ci left: 9.335189e-05	ci right 1.469495e-04	k: 79	n:670000
PYGL   670000 perm   304 sec   (2201 perm/sec)   p_kst 1.179104e-04   p_cons 8.460358e-01   p_joint 1.179104e-04

Joint ci ratio: 4.382432e-01	ci left: 9.197905e-05	ci right 1.447885e-04	k: 79	n:680000
Cons ci ratio: 2.028540e-03	ci left: 8.450942e-01	ci right 8.468117e-01	k: 575249	n:680000
KS ci ratio: 4.382432e-01	ci left: 9.197905e-05	ci right 1.447885e-04	k: 79	n:680000
PYGL   680000 perm   312 sec   (2182 perm/sec)   p_kst 1.161765e-04   p_cons 8.459544e-01   p_joint 1.161765e-04

Joint ci ratio: 4.355297e-01	ci left: 9.193586e-05	ci right 1.442978e-04	k: 80	n:690000
Cons ci ratio: 2.013053e-03	ci left: 8.451955e-01	ci right 8.469001e-01	k: 583774	n:690000
KS ci ratio: 4.355297e-01	ci left: 9.193586e-05	ci right 1.442978e-04	k: 80	n:690000
PYGL   690000 perm   319 sec   (2166 perm/sec)   p_kst 1.159420e-04   p_cons 8.460493e-01   p_joint 1.159420e-04

Joint ci ratio: 4.355300e-01	ci left: 9.062247e-05	ci right 1.422365e-04	k: 80	n:700000
Cons ci ratio: 1.998387e-03	ci left: 8.452325e-01	ci right 8.469247e-01	k: 592256	n:700000
KS ci ratio: 4.355300e-01	ci left: 9.062247e-05	ci right 1.422365e-04	k: 80	n:700000
PYGL   700000 perm   326 sec   (2149 perm/sec)   p_kst 1.142857e-04   p_cons 8.460800e-01   p_joint 1.142857e-04

Joint ci ratio: 4.328663e-01	ci left: 9.060057e-05	ci right 1.417947e-04	k: 81	n:710000
Cons ci ratio: 1.983972e-03	ci left: 8.452769e-01	ci right 8.469569e-01	k: 600744	n:710000
KS ci ratio: 4.328663e-01	ci left: 9.060057e-05	ci right 1.417947e-04	k: 81	n:710000
PYGL   710000 perm   333 sec   (2133 perm/sec)   p_kst 1.140845e-04   p_cons 8.461183e-01   p_joint 1.140845e-04

Joint ci ratio: 4.302508e-01	ci left: 9.058021e-05	ci right 1.413642e-04	k: 82	n:720000
Cons ci ratio: 1.970295e-03	ci left: 8.452630e-01	ci right 8.469314e-01	k: 609191	n:720000
KS ci ratio: 4.302508e-01	ci left: 9.058021e-05	ci right 1.413642e-04	k: 82	n:720000
PYGL   720000 perm   341 sec   (2113 perm/sec)   p_kst 1.138889e-04   p_cons 8.460986e-01   p_joint 1.138889e-04

Joint ci ratio: 4.302511e-01	ci left: 8.933937e-05	ci right 1.394277e-04	k: 82	n:730000
Cons ci ratio: 1.956547e-03	ci left: 8.452962e-01	ci right 8.469531e-01	k: 617672	n:730000
KS ci ratio: 4.302511e-01	ci left: 8.933937e-05	ci right 1.394277e-04	k: 82	n:730000
PYGL   730000 perm   348 sec   (2096 perm/sec)   p_kst 1.123288e-04   p_cons 8.461260e-01   p_joint 1.123288e-04

Joint ci ratio: 4.276825e-01	ci left: 8.933750e-05	ci right 1.390400e-04	k: 83	n:740000
Cons ci ratio: 1.943477e-03	ci left: 8.452758e-01	ci right 8.469215e-01	k: 626114	n:740000
KS ci ratio: 4.276825e-01	ci left: 8.933750e-05	ci right 1.390400e-04	k: 83	n:740000
PYGL   740000 perm   356 sec   (2081 perm/sec)   p_kst 1.121622e-04   p_cons 8.461000e-01   p_joint 1.121622e-04

Joint ci ratio: 4.276828e-01	ci left: 8.814632e-05	ci right 1.371862e-04	k: 83	n:750000
Cons ci ratio: 1.930496e-03	ci left: 8.452787e-01	ci right 8.469133e-01	k: 634573	n:750000
KS ci ratio: 4.276828e-01	ci left: 8.814632e-05	ci right 1.371862e-04	k: 83	n:750000
PYGL   750000 perm   363 sec   (2065 perm/sec)   p_kst 1.106667e-04   p_cons 8.460973e-01   p_joint 1.106667e-04

Joint ci ratio: 4.276831e-01	ci left: 8.698648e-05	ci right 1.353811e-04	k: 83	n:760000
Cons ci ratio: 1.917221e-03	ci left: 8.453566e-01	ci right 8.469802e-01	k: 643089	n:760000
KS ci ratio: 4.276831e-01	ci left: 8.698648e-05	ci right 1.353811e-04	k: 83	n:760000
PYGL   760000 perm   371 sec   (2050 perm/sec)   p_kst 1.092105e-04   p_cons 8.461697e-01   p_joint 1.092105e-04

Joint ci ratio: 4.276835e-01	ci left: 8.585678e-05	ci right 1.336229e-04	k: 83	n:770000
Cons ci ratio: 1.904233e-03	ci left: 8.454300e-01	ci right 8.470427e-01	k: 651603	n:770000
KS ci ratio: 4.276835e-01	ci left: 8.585678e-05	ci right 1.336229e-04	k: 83	n:770000
PYGL   770000 perm   379 sec   (2032 perm/sec)   p_kst 1.077922e-04   p_cons 8.462377e-01   p_joint 1.077922e-04

Joint ci ratio: 4.276838e-01	ci left: 8.475604e-05	ci right 1.319098e-04	k: 83	n:780000
Cons ci ratio: 1.892224e-03	ci left: 8.454026e-01	ci right 8.470051e-01	k: 660040	n:780000
KS ci ratio: 4.276838e-01	ci left: 8.475604e-05	ci right 1.319098e-04	k: 83	n:780000
PYGL   780000 perm   387 sec   (2015 perm/sec)   p_kst 1.064103e-04   p_cons 8.462051e-01   p_joint 1.064103e-04

Joint ci ratio: 4.251606e-01	ci left: 8.481312e-05	ci right 1.316410e-04	k: 84	n:790000
Cons ci ratio: 1.879991e-03	ci left: 8.454381e-01	ci right 8.470302e-01	k: 668526	n:790000
KS ci ratio: 4.251606e-01	ci left: 8.481312e-05	ci right 1.316410e-04	k: 84	n:790000
PYGL   790000 perm   395 sec   (2000 perm/sec)   p_kst 1.063291e-04   p_cons 8.462354e-01   p_joint 1.063291e-04

Joint ci ratio: 4.226815e-01	ci left: 8.486958e-05	ci right 1.313781e-04	k: 85	n:800000
Cons ci ratio: 1.868584e-03	ci left: 8.453901e-01	ci right 8.469724e-01	k: 676946	n:800000
KS ci ratio: 4.226815e-01	ci left: 8.486958e-05	ci right 1.313781e-04	k: 85	n:800000
PYGL   800000 perm   403 sec   (1985 perm/sec)   p_kst 1.062500e-04   p_cons 8.461825e-01   p_joint 1.062500e-04

Joint ci ratio: 4.226818e-01	ci left: 8.382180e-05	ci right 1.297562e-04	k: 85	n:810000
Cons ci ratio: 1.857364e-03	ci left: 8.453457e-01	ci right 8.469185e-01	k: 685368	n:810000
KS ci ratio: 4.226818e-01	ci left: 8.382180e-05	ci right 1.297562e-04	k: 85	n:810000
PYGL   810000 perm   411 sec   (1971 perm/sec)   p_kst 1.049383e-04   p_cons 8.461333e-01   p_joint 1.049383e-04

Joint ci ratio: 4.226820e-01	ci left: 8.279957e-05	ci right 1.281738e-04	k: 85	n:820000
Cons ci ratio: 1.846430e-03	ci left: 8.452902e-01	ci right 8.468536e-01	k: 693780	n:820000
KS ci ratio: 4.226820e-01	ci left: 8.279957e-05	ci right 1.281738e-04	k: 85	n:820000
PYGL   820000 perm   419 sec   (1957 perm/sec)   p_kst 1.036585e-04   p_cons 8.460732e-01   p_joint 1.036585e-04

Joint ci ratio: 4.202458e-01	ci left: 8.287900e-05	ci right 1.279615e-04	k: 86	n:830000
Cons ci ratio: 1.834983e-03	ci left: 8.453364e-01	ci right 8.468901e-01	k: 702275	n:830000
KS ci ratio: 4.202458e-01	ci left: 8.287900e-05	ci right 1.279615e-04	k: 86	n:830000
PYGL   830000 perm   427 sec   (1943 perm/sec)   p_kst 1.036145e-04   p_cons 8.461145e-01   p_joint 1.036145e-04

Joint ci ratio: 4.202461e-01	ci left: 8.189234e-05	ci right 1.264381e-04	k: 86	n:840000
Cons ci ratio: 1.824296e-03	ci left: 8.453027e-01	ci right 8.468473e-01	k: 710704	n:840000
KS ci ratio: 4.202461e-01	ci left: 8.189234e-05	ci right 1.264381e-04	k: 86	n:840000
PYGL   840000 perm   435 sec   (1930 perm/sec)   p_kst 1.023810e-04   p_cons 8.460762e-01   p_joint 1.023810e-04

Joint ci ratio: 4.154972e-01	ci left: 8.303442e-05	ci right 1.275496e-04	k: 88	n:850000
Cons ci ratio: 1.813932e-03	ci left: 8.452498e-01	ci right 8.467855e-01	k: 719116	n:850000
KS ci ratio: 4.154972e-01	ci left: 8.303442e-05	ci right 1.275496e-04	k: 88	n:850000
PYGL   850000 perm   443 sec   (1917 perm/sec)   p_kst 1.035294e-04   p_cons 8.460188e-01   p_joint 1.035294e-04

Joint ci ratio: 4.131824e-01	ci left: 8.311046e-05	ci right 1.273498e-04	k: 89	n:860000
Cons ci ratio: 1.803340e-03	ci left: 8.452564e-01	ci right 8.467832e-01	k: 727578	n:860000
KS ci ratio: 4.131824e-01	ci left: 8.311046e-05	ci right 1.273498e-04	k: 89	n:860000
PYGL   860000 perm   452 sec   (1902 perm/sec)   p_kst 1.034884e-04   p_cons 8.460209e-01   p_joint 1.034884e-04

Joint ci ratio: 4.064631e-01	ci left: 8.524793e-05	ci right 1.296879e-04	k: 92	n:870000
Cons ci ratio: 1.793344e-03	ci left: 8.452030e-01	ci right 8.467212e-01	k: 735988	n:870000
KS ci ratio: 4.064631e-01	ci left: 8.524793e-05	ci right 1.296879e-04	k: 92	n:870000
PYGL   870000 perm   461 sec   (1887 perm/sec)   p_kst 1.057471e-04   p_cons 8.459632e-01   p_joint 1.057471e-04

Joint ci ratio: 4.064634e-01	ci left: 8.427920e-05	ci right 1.282142e-04	k: 92	n:880000
Cons ci ratio: 1.783581e-03	ci left: 8.451405e-01	ci right 8.466504e-01	k: 744389	n:880000
KS ci ratio: 4.064634e-01	ci left: 8.427920e-05	ci right 1.282142e-04	k: 92	n:880000
PYGL   880000 perm   469 sec   (1875 perm/sec)   p_kst 1.045455e-04   p_cons 8.458966e-01   p_joint 1.045455e-04

Joint ci ratio: 4.042955e-01	ci left: 8.434126e-05	ci right 1.280112e-04	k: 93	n:890000
Cons ci ratio: 1.772890e-03	ci left: 8.452394e-01	ci right 8.467404e-01	k: 752932	n:890000
KS ci ratio: 4.042955e-01	ci left: 8.434126e-05	ci right 1.280112e-04	k: 93	n:890000
PYGL   890000 perm   478 sec   (1863 perm/sec)   p_kst 1.044944e-04   p_cons 8.459910e-01   p_joint 1.044944e-04

Joint ci ratio: 4.178527e-01	ci left: 7.742674e-05	ci right 1.192366e-04	k: 87	n:900000
Cons ci ratio: 1.762870e-03	ci left: 8.452649e-01	ci right 8.467574e-01	k: 761411	n:900000
KS ci ratio: 4.178527e-01	ci left: 7.742674e-05	ci right 1.192366e-04	k: 87	n:900000
PYGL   900000 perm   487 sec   (1850 perm/sec)   p_kst 9.666667e-05   p_cons 8.460122e-01   p_joint 9.666667e-05

Joint ci ratio: 4.154986e-01	ci left: 7.755957e-05	ci right 1.191398e-04	k: 88	n:910000
Cons ci ratio: 1.752928e-03	ci left: 8.453030e-01	ci right 8.467871e-01	k: 769902	n:910000
KS ci ratio: 4.154986e-01	ci left: 7.755957e-05	ci right 1.191398e-04	k: 88	n:910000
PYGL   910000 perm   495 sec   (1837 perm/sec)   p_kst 9.670330e-05   p_cons 8.460462e-01   p_joint 9.670330e-05

Joint ci ratio: 4.154988e-01	ci left: 7.671653e-05	ci right 1.178448e-04	k: 88	n:920000
Cons ci ratio: 1.743241e-03	ci left: 8.453272e-01	ci right 8.468032e-01	k: 778381	n:920000
KS ci ratio: 4.154988e-01	ci left: 7.671653e-05	ci right 1.178448e-04	k: 88	n:920000
PYGL   920000 perm   504 sec   (1825 perm/sec)   p_kst 9.565217e-05   p_cons 8.460663e-01   p_joint 9.565217e-05

Joint ci ratio: 4.131841e-01	ci left: 7.685478e-05	ci right 1.177645e-04	k: 89	n:930000
Cons ci ratio: 1.733633e-03	ci left: 8.453628e-01	ci right 8.468307e-01	k: 786871	n:930000
KS ci ratio: 4.131841e-01	ci left: 7.685478e-05	ci right 1.177645e-04	k: 89	n:930000
PYGL   930000 perm   513 sec   (1813 perm/sec)   p_kst 9.569892e-05   p_cons 8.460978e-01   p_joint 9.569892e-05

Joint ci ratio: 4.086680e-01	ci left: 7.794487e-05	ci right 1.188581e-04	k: 91	n:940000
Cons ci ratio: 1.724330e-03	ci left: 8.453753e-01	ci right 8.468353e-01	k: 795340	n:940000
KS ci ratio: 4.086680e-01	ci left: 7.794487e-05	ci right 1.188581e-04	k: 91	n:940000
PYGL   940000 perm   522 sec   (1802 perm/sec)   p_kst 9.680851e-05   p_cons 8.461064e-01   p_joint 9.680851e-05

Joint ci ratio: 4.086682e-01	ci left: 7.712439e-05	ci right 1.176070e-04	k: 91	n:950000
Cons ci ratio: 1.715224e-03	ci left: 8.453802e-01	ci right 8.468325e-01	k: 803802	n:950000
KS ci ratio: 4.086682e-01	ci left: 7.712439e-05	ci right 1.176070e-04	k: 91	n:950000
PYGL   950000 perm   531 sec   (1791 perm/sec)   p_kst 9.578947e-05   p_cons 8.461074e-01   p_joint 9.578947e-05

Joint ci ratio: 4.086685e-01	ci left: 7.632100e-05	ci right 1.163819e-04	k: 91	n:960000
Cons ci ratio: 1.706521e-03	ci left: 8.453453e-01	ci right 8.467901e-01	k: 812226	n:960000
KS ci ratio: 4.086685e-01	ci left: 7.632100e-05	ci right 1.163819e-04	k: 91	n:960000
PYGL   960000 perm   540 sec   (1779 perm/sec)   p_kst 9.479167e-05   p_cons 8.460688e-01   p_joint 9.479167e-05

Joint ci ratio: 4.064654e-01	ci left: 7.645941e-05	ci right 1.163182e-04	k: 92	n:970000
Cons ci ratio: 1.697619e-03	ci left: 8.453617e-01	ci right 8.467991e-01	k: 820699	n:970000
KS ci ratio: 4.064654e-01	ci left: 7.645941e-05	ci right 1.163182e-04	k: 92	n:970000
PYGL   970000 perm   549 sec   (1768 perm/sec)   p_kst 9.484536e-05   p_cons 8.460814e-01   p_joint 9.484536e-05

Joint ci ratio: 4.064656e-01	ci left: 7.567921e-05	ci right 1.151313e-04	k: 92	n:980000
Cons ci ratio: 1.688729e-03	ci left: 8.453973e-01	ci right 8.468272e-01	k: 829191	n:980000
KS ci ratio: 4.064656e-01	ci left: 7.567921e-05	ci right 1.151313e-04	k: 92	n:980000
PYGL   980000 perm   558 sec   (1758 perm/sec)   p_kst 9.387755e-05   p_cons 8.461133e-01   p_joint 9.387755e-05

Joint ci ratio: 4.042977e-01	ci left: 7.582186e-05	ci right 1.150809e-04	k: 93	n:990000
Cons ci ratio: 1.641671e-03	ci left: 8.513536e-01	ci right 8.527534e-01	k: 843534	n:990000
KS ci ratio: 4.042977e-01	ci left: 7.582186e-05	ci right 1.150809e-04	k: 93	n:990000
PYGL   990000 perm   567 sec   (1747 perm/sec)   p_kst 9.393939e-05   p_cons 8.520545e-01   p_joint 9.393939e-05

Joint ci ratio: 4.000639e-01	ci left: 7.686133e-05	ci right 1.161313e-04	k: 95	n:1000000
Cons ci ratio: 1.633167e-03	ci left: 8.513997e-01	ci right 8.527923e-01	k: 852097	n:1000000
KS ci ratio: 4.000639e-01	ci left: 7.686133e-05	ci right 1.161313e-04	k: 95	n:1000000
PYGL   1000000 perm   576 sec   (1736 perm/sec)   p_kst 9.500000e-05   p_cons 8.520970e-01   p_joint 9.500000e-05

Joint ci ratio: 4.000641e-01	ci left: 7.610032e-05	ci right 1.149815e-04	k: 95	n:1010000
Cons ci ratio: 1.625528e-03	ci left: 8.513308e-01	ci right 8.527167e-01	k: 860545	n:1010000
KS ci ratio: 4.000641e-01	ci left: 7.610032e-05	ci right 1.149815e-04	k: 95	n:1010000
PYGL   1010000 perm   585 sec   (1726 perm/sec)   p_kst 9.405941e-05   p_cons 8.520248e-01   p_joint 9.405941e-05

Joint ci ratio: 3.979966e-01	ci left: 7.623624e-05	ci right 1.149326e-04	k: 96	n:1020000
Cons ci ratio: 1.617296e-03	ci left: 8.513723e-01	ci right 8.527512e-01	k: 869104	n:1020000
KS ci ratio: 3.979966e-01	ci left: 7.623624e-05	ci right 1.149326e-04	k: 96	n:1020000
PYGL   1020000 perm   595 sec   (1715 perm/sec)   p_kst 9.411765e-05   p_cons 8.520627e-01   p_joint 9.411765e-05

Joint ci ratio: 3.979968e-01	ci left: 7.549608e-05	ci right 1.138167e-04	k: 96	n:1030000
Cons ci ratio: 1.609374e-03	ci left: 8.513838e-01	ci right 8.527560e-01	k: 877633	n:1030000
KS ci ratio: 3.979968e-01	ci left: 7.549608e-05	ci right 1.138167e-04	k: 96	n:1030000
PYGL   1030000 perm   604 sec   (1705 perm/sec)   p_kst 9.320388e-05   p_cons 8.520709e-01   p_joint 9.320388e-05

Joint ci ratio: 3.979969e-01	ci left: 7.477015e-05	ci right 1.127223e-04	k: 96	n:1040000
Cons ci ratio: 1.601726e-03	ci left: 8.513700e-01	ci right 8.527357e-01	k: 886136	n:1040000
KS ci ratio: 3.979969e-01	ci left: 7.477015e-05	ci right 1.127223e-04	k: 96	n:1040000
PYGL   1040000 perm   614 sec   (1695 perm/sec)   p_kst 9.230769e-05   p_cons 8.520538e-01   p_joint 9.230769e-05

Joint ci ratio: 3.919811e-01	ci left: 7.663142e-05	ci right 1.147883e-04	k: 99	n:1050000
Cons ci ratio: 1.593951e-03	ci left: 8.513938e-01	ci right 8.527529e-01	k: 894678	n:1050000
KS ci ratio: 3.919811e-01	ci left: 7.663142e-05	ci right 1.147883e-04	k: 99	n:1050000
PYGL   1050000 perm   623 sec   (1685 perm/sec)   p_kst 9.428571e-05   p_cons 8.520743e-01   p_joint 9.428571e-05

Joint ci ratio: 3.919813e-01	ci left: 7.590847e-05	ci right 1.137054e-04	k: 99	n:1060000
Cons ci ratio: 1.586045e-03	ci left: 8.514558e-01	ci right 8.528083e-01	k: 903261	n:1060000
KS ci ratio: 3.919813e-01	ci left: 7.590847e-05	ci right 1.137054e-04	k: 99	n:1060000
PYGL   1060000 perm   633 sec   (1675 perm/sec)   p_kst 9.339623e-05   p_cons 8.521330e-01   p_joint 9.339623e-05

Joint ci ratio: 3.900360e-01	ci left: 7.604174e-05	ci right 1.136688e-04	k: 100	n:1070000
Cons ci ratio: 1.578612e-03	ci left: 8.514596e-01	ci right 8.528057e-01	k: 911783	n:1070000
KS ci ratio: 3.900360e-01	ci left: 7.604174e-05	ci right 1.136688e-04	k: 100	n:1070000
PYGL   1070000 perm   643 sec   (1665 perm/sec)   p_kst 9.345794e-05   p_cons 8.521336e-01   p_joint 9.345794e-05

Joint ci ratio: 3.900362e-01	ci left: 7.533764e-05	ci right 1.126163e-04	k: 100	n:1080000
Cons ci ratio: 1.571497e-03	ci left: 8.514291e-01	ci right 8.527690e-01	k: 920268	n:1080000
KS ci ratio: 3.900362e-01	ci left: 7.533764e-05	ci right 1.126163e-04	k: 100	n:1080000
PYGL   1080000 perm   652 sec   (1655 perm/sec)   p_kst 9.259259e-05   p_cons 8.521000e-01   p_joint 9.259259e-05

Joint ci ratio: 3.881195e-01	ci left: 7.547415e-05	ci right 1.125898e-04	k: 101	n:1090000
Cons ci ratio: 1.564027e-03	ci left: 8.514717e-01	ci right 8.528053e-01	k: 928832	n:1090000
KS ci ratio: 3.881195e-01	ci left: 7.547415e-05	ci right 1.125898e-04	k: 101	n:1090000
PYGL   1090000 perm   662 sec   (1646 perm/sec)   p_kst 9.266055e-05   p_cons 8.521394e-01   p_joint 9.266055e-05

Joint ci ratio: 3.881197e-01	ci left: 7.478802e-05	ci right 1.115663e-04	k: 101	n:1100000
Cons ci ratio: 1.557510e-03	ci left: 8.513760e-01	ci right 8.527040e-01	k: 937245	n:1100000
KS ci ratio: 3.881197e-01	ci left: 7.478802e-05	ci right 1.115663e-04	k: 101	n:1100000
PYGL   1100000 perm   672 sec   (1636 perm/sec)   p_kst 9.181818e-05   p_cons 8.520409e-01   p_joint 9.181818e-05

Joint ci ratio: 3.881198e-01	ci left: 7.411425e-05	ci right 1.105612e-04	k: 101	n:1110000
Cons ci ratio: 1.550752e-03	ci left: 8.513344e-01	ci right 8.526565e-01	k: 945716	n:1110000
KS ci ratio: 3.881198e-01	ci left: 7.411425e-05	ci right 1.105612e-04	k: 101	n:1110000
PYGL   1110000 perm   682 sec   (1627 perm/sec)   p_kst 9.099099e-05   p_cons 8.519964e-01   p_joint 9.099099e-05

Joint ci ratio: 3.881200e-01	ci left: 7.345251e-05	ci right 1.095741e-04	k: 101	n:1120000
Cons ci ratio: 1.543737e-03	ci left: 8.513499e-01	ci right 8.526661e-01	k: 954250	n:1120000
KS ci ratio: 3.881200e-01	ci left: 7.345251e-05	ci right 1.095741e-04	k: 101	n:1120000
PYGL   1120000 perm   693 sec   (1617 perm/sec)   p_kst 9.017857e-05   p_cons 8.520089e-01   p_joint 9.017857e-05

Joint ci ratio: 3.843698e-01	ci left: 7.440054e-05	ci right 1.105453e-04	k: 103	n:1130000
Cons ci ratio: 1.537215e-03	ci left: 8.512996e-01	ci right 8.526101e-01	k: 962710	n:1130000
KS ci ratio: 3.843698e-01	ci left: 7.440054e-05	ci right 1.105453e-04	k: 103	n:1130000
PYGL   1130000 perm   703 sec   (1608 perm/sec)   p_kst 9.115044e-05   p_cons 8.519558e-01   p_joint 9.115044e-05

Joint ci ratio: 3.825350e-01	ci left: 7.454053e-05	ci right 1.105370e-04	k: 104	n:1140000
Cons ci ratio: 1.530205e-03	ci left: 8.513442e-01	ci right 8.526488e-01	k: 971277	n:1140000
KS ci ratio: 3.825350e-01	ci left: 7.454053e-05	ci right 1.105370e-04	k: 104	n:1140000
PYGL   1140000 perm   713 sec   (1599 perm/sec)   p_kst 9.122807e-05   p_cons 8.519974e-01   p_joint 9.122807e-05

Joint ci ratio: 3.825352e-01	ci left: 7.389235e-05	ci right 1.095758e-04	k: 104	n:1150000
Cons ci ratio: 1.523201e-03	ci left: 8.514028e-01	ci right 8.527015e-01	k: 979861	n:1150000
KS ci ratio: 3.825352e-01	ci left: 7.389235e-05	ci right 1.095758e-04	k: 104	n:1150000
PYGL   1150000 perm   723 sec   (1590 perm/sec)   p_kst 9.043478e-05   p_cons 8.520530e-01   p_joint 9.043478e-05

Joint ci ratio: 3.771845e-01	ci left: 7.559463e-05	ci right 1.114632e-04	k: 107	n:1160000
Cons ci ratio: 1.516443e-03	ci left: 8.514354e-01	ci right 8.527284e-01	k: 988416	n:1160000
KS ci ratio: 3.771845e-01	ci left: 7.559463e-05	ci right 1.114632e-04	k: 107	n:1160000
PYGL   1160000 perm   734 sec   (1580 perm/sec)   p_kst 9.224138e-05   p_cons 8.520828e-01   p_joint 9.224138e-05

Joint ci ratio: 3.771846e-01	ci left: 7.494852e-05	ci right 1.105105e-04	k: 107	n:1170000
Cons ci ratio: 1.509989e-03	ci left: 8.514315e-01	ci right 8.527189e-01	k: 996929	n:1170000
KS ci ratio: 3.771846e-01	ci left: 7.494852e-05	ci right 1.105105e-04	k: 107	n:1170000
PYGL   1170000 perm   745 sec   (1570 perm/sec)   p_kst 9.145299e-05   p_cons 8.520761e-01   p_joint 9.145299e-05

Joint ci ratio: 3.754504e-01	ci left: 7.508066e-05	ci right 1.105012e-04	k: 108	n:1180000
Cons ci ratio: 1.503626e-03	ci left: 8.514259e-01	ci right 8.527079e-01	k: 1005440	n:1180000
KS ci ratio: 3.754504e-01	ci left: 7.508066e-05	ci right 1.105012e-04	k: 108	n:1180000
PYGL   1180000 perm   756 sec   (1561 perm/sec)   p_kst 9.152542e-05   p_cons 8.520678e-01   p_joint 9.152542e-05

Joint ci ratio: 3.754505e-01	ci left: 7.444973e-05	ci right 1.095727e-04	k: 108	n:1190000
Cons ci ratio: 1.497268e-03	ci left: 8.514331e-01	ci right 8.527097e-01	k: 1013966	n:1190000
KS ci ratio: 3.754505e-01	ci left: 7.444973e-05	ci right 1.095727e-04	k: 108	n:1190000
PYGL   1190000 perm   767 sec   (1552 perm/sec)   p_kst 9.075630e-05   p_cons 8.520723e-01   p_joint 9.075630e-05

Joint ci ratio: 3.737400e-01	ci left: 7.458419e-05	ci right 1.095710e-04	k: 109	n:1200000
Cons ci ratio: 1.490710e-03	ci left: 8.514878e-01	ci right 8.527589e-01	k: 1022549	n:1200000
KS ci ratio: 3.737400e-01	ci left: 7.458419e-05	ci right 1.095710e-04	k: 109	n:1200000
PYGL   1200000 perm   778 sec   (1543 perm/sec)   p_kst 9.083333e-05   p_cons 8.521242e-01   p_joint 9.083333e-05

Joint ci ratio: 3.737402e-01	ci left: 7.396779e-05	ci right 1.086655e-04	k: 109	n:1210000
Cons ci ratio: 1.484694e-03	ci left: 8.514637e-01	ci right 8.527296e-01	k: 1031038	n:1210000
KS ci ratio: 3.737402e-01	ci left: 7.396779e-05	ci right 1.086655e-04	k: 109	n:1210000
PYGL   1210000 perm   788 sec   (1535 perm/sec)   p_kst 9.008264e-05   p_cons 8.520975e-01   p_joint 9.008264e-05

Joint ci ratio: 3.720529e-01	ci left: 7.410435e-05	ci right 1.086709e-04	k: 110	n:1220000
Cons ci ratio: 1.478669e-03	ci left: 8.514540e-01	ci right 8.527148e-01	k: 1039544	n:1220000
KS ci ratio: 3.720529e-01	ci left: 7.410435e-05	ci right 1.086709e-04	k: 110	n:1220000
PYGL   1220000 perm   799 sec   (1527 perm/sec)   p_kst 9.016393e-05   p_cons 8.520852e-01   p_joint 9.016393e-05

Joint ci ratio: 3.720530e-01	ci left: 7.350187e-05	ci right 1.077874e-04	k: 110	n:1230000
Cons ci ratio: 1.472706e-03	ci left: 8.514461e-01	ci right 8.527018e-01	k: 1048052	n:1230000
KS ci ratio: 3.720530e-01	ci left: 7.350187e-05	ci right 1.077874e-04	k: 110	n:1230000
PYGL   1230000 perm   810 sec   (1518 perm/sec)   p_kst 8.943089e-05   p_cons 8.520748e-01   p_joint 8.943089e-05

Joint ci ratio: 3.687456e-01	ci left: 7.437190e-05	ci right 1.086805e-04	k: 112	n:1240000
Cons ci ratio: 1.467046e-03	ci left: 8.513988e-01	ci right 8.526495e-01	k: 1056511	n:1240000
KS ci ratio: 3.687456e-01	ci left: 7.437190e-05	ci right 1.086805e-04	k: 112	n:1240000
PYGL   1240000 perm   822 sec   (1509 perm/sec)   p_kst 9.032258e-05   p_cons 8.520250e-01   p_joint 9.032258e-05

Joint ci ratio: 3.671247e-01	ci left: 7.450296e-05	ci right 1.086847e-04	k: 113	n:1250000
Cons ci ratio: 1.461255e-03	ci left: 8.513859e-01	ci right 8.526317e-01	k: 1065012	n:1250000
KS ci ratio: 3.671247e-01	ci left: 7.450296e-05	ci right 1.086847e-04	k: 113	n:1250000
PYGL   1250000 perm   833 sec   (1501 perm/sec)   p_kst 9.040000e-05   p_cons 8.520096e-01   p_joint 9.040000e-05

Joint ci ratio: 3.671249e-01	ci left: 7.391166e-05	ci right 1.078222e-04	k: 113	n:1260000
Cons ci ratio: 1.455409e-03	ci left: 8.513947e-01	ci right 8.526355e-01	k: 1073540	n:1260000
KS ci ratio: 3.671249e-01	ci left: 7.391166e-05	ci right 1.078222e-04	k: 113	n:1260000
PYGL   1260000 perm   844 sec   (1492 perm/sec)   p_kst 8.968254e-05   p_cons 8.520159e-01   p_joint 8.968254e-05

Joint ci ratio: 3.671250e-01	ci left: 7.332967e-05	ci right 1.069732e-04	k: 113	n:1270000
Cons ci ratio: 1.449822e-03	ci left: 8.513702e-01	ci right 8.526062e-01	k: 1082026	n:1270000
KS ci ratio: 3.671250e-01	ci left: 7.332967e-05	ci right 1.069732e-04	k: 113	n:1270000
PYGL   1270000 perm   856 sec   (1484 perm/sec)   p_kst 8.897638e-05   p_cons 8.519890e-01   p_joint 8.897638e-05

Joint ci ratio: 3.671251e-01	ci left: 7.275678e-05	ci right 1.061375e-04	k: 113	n:1280000
Cons ci ratio: 1.444071e-03	ci left: 8.513860e-01	ci right 8.526171e-01	k: 1090563	n:1280000
KS ci ratio: 3.671251e-01	ci left: 7.275678e-05	ci right 1.061375e-04	k: 113	n:1280000
PYGL   1280000 perm   867 sec   (1476 perm/sec)   p_kst 8.828125e-05   p_cons 8.520023e-01   p_joint 8.828125e-05

Joint ci ratio: 3.671253e-01	ci left: 7.219277e-05	ci right 1.053147e-04	k: 113	n:1290000
Cons ci ratio: 1.438653e-03	ci left: 8.513550e-01	ci right 8.525814e-01	k: 1099040	n:1290000
KS ci ratio: 3.671253e-01	ci left: 7.219277e-05	ci right 1.053147e-04	k: 113	n:1290000
PYGL   1290000 perm   879 sec   (1467 perm/sec)   p_kst 8.759690e-05   p_cons 8.519690e-01   p_joint 8.759690e-05

Joint ci ratio: 3.671254e-01	ci left: 7.163744e-05	ci right 1.045046e-04	k: 113	n:1300000
Cons ci ratio: 1.433143e-03	ci left: 8.513514e-01	ci right 8.525732e-01	k: 1107552	n:1300000
KS ci ratio: 3.671254e-01	ci left: 7.163744e-05	ci right 1.045046e-04	k: 113	n:1300000
PYGL   1300000 perm   891 sec   (1459 perm/sec)   p_kst 8.692308e-05   p_cons 8.519631e-01   p_joint 8.692308e-05

Joint ci ratio: 3.655257e-01	ci left: 7.178368e-05	ci right 1.045402e-04	k: 114	n:1310000
Cons ci ratio: 1.427713e-03	ci left: 8.513449e-01	ci right 8.525620e-01	k: 1116060	n:1310000
KS ci ratio: 3.655257e-01	ci left: 7.178368e-05	ci right 1.045402e-04	k: 114	n:1310000
PYGL   1310000 perm   903 sec   (1451 perm/sec)   p_kst 8.702290e-05   p_cons 8.519542e-01   p_joint 8.702290e-05

Joint ci ratio: 3.655258e-01	ci left: 7.123986e-05	ci right 1.037482e-04	k: 114	n:1320000
Cons ci ratio: 1.422309e-03	ci left: 8.513445e-01	ci right 8.525570e-01	k: 1124576	n:1320000
KS ci ratio: 3.655258e-01	ci left: 7.123986e-05	ci right 1.037482e-04	k: 114	n:1320000
PYGL   1320000 perm   914 sec   (1444 perm/sec)   p_kst 8.636364e-05   p_cons 8.519515e-01   p_joint 8.636364e-05

Joint ci ratio: 3.655259e-01	ci left: 7.070422e-05	ci right 1.029682e-04	k: 114	n:1330000
Cons ci ratio: 1.416971e-03	ci left: 8.513434e-01	ci right 8.525513e-01	k: 1133091	n:1330000
KS ci ratio: 3.655259e-01	ci left: 7.070422e-05	ci right 1.029682e-04	k: 114	n:1330000
PYGL   1330000 perm   926 sec   (1436 perm/sec)   p_kst 8.571429e-05   p_cons 8.519481e-01   p_joint 8.571429e-05

Joint ci ratio: 3.639470e-01	ci left: 7.085445e-05	ci right 1.030141e-04	k: 115	n:1340000
Cons ci ratio: 1.411860e-03	ci left: 8.513124e-01	ci right 8.525159e-01	k: 1141566	n:1340000
KS ci ratio: 3.639470e-01	ci left: 7.085445e-05	ci right 1.030141e-04	k: 115	n:1340000
PYGL   1340000 perm   938 sec   (1428 perm/sec)   p_kst 8.582090e-05   p_cons 8.519149e-01   p_joint 8.582090e-05

Joint ci ratio: 3.623883e-01	ci left: 7.100276e-05	ci right 1.030591e-04	k: 116	n:1350000
Cons ci ratio: 1.406820e-03	ci left: 8.512789e-01	ci right 8.524781e-01	k: 1150037	n:1350000
KS ci ratio: 3.623883e-01	ci left: 7.100276e-05	ci right 1.030591e-04	k: 116	n:1350000
PYGL   1350000 perm   950 sec   (1421 perm/sec)   p_kst 8.592593e-05   p_cons 8.518793e-01   p_joint 8.592593e-05

Joint ci ratio: 3.608495e-01	ci left: 7.114917e-05	ci right 1.031031e-04	k: 117	n:1360000
Cons ci ratio: 1.401499e-03	ci left: 8.513063e-01	ci right 8.525010e-01	k: 1158590	n:1360000
KS ci ratio: 3.608495e-01	ci left: 7.114917e-05	ci right 1.031031e-04	k: 117	n:1360000
PYGL   1360000 perm   962 sec   (1414 perm/sec)   p_kst 8.602941e-05   p_cons 8.519044e-01   p_joint 8.602941e-05

Joint ci ratio: 3.548842e-01	ci left: 7.328709e-05	ci right 1.055316e-04	k: 121	n:1370000
Cons ci ratio: 1.396419e-03	ci left: 8.513005e-01	ci right 8.524908e-01	k: 1167098	n:1370000
KS ci ratio: 3.548842e-01	ci left: 7.328709e-05	ci right 1.055316e-04	k: 121	n:1370000
PYGL   1370000 perm   974 sec   (1407 perm/sec)   p_kst 8.832117e-05   p_cons 8.518964e-01   p_joint 8.832117e-05

Joint ci ratio: 3.548843e-01	ci left: 7.275602e-05	ci right 1.047669e-04	k: 121	n:1380000
Cons ci ratio: 1.391402e-03	ci left: 8.512932e-01	ci right 8.524792e-01	k: 1175604	n:1380000
KS ci ratio: 3.548843e-01	ci left: 7.275602e-05	ci right 1.047669e-04	k: 121	n:1380000
PYGL   1380000 perm   986 sec   (1400 perm/sec)   p_kst 8.768116e-05   p_cons 8.518870e-01   p_joint 8.768116e-05

Joint ci ratio: 3.548844e-01	ci left: 7.223259e-05	ci right 1.040132e-04	k: 121	n:1390000
Cons ci ratio: 1.386257e-03	ci left: 8.513192e-01	ci right 8.525009e-01	k: 1184156	n:1390000
KS ci ratio: 3.548844e-01	ci left: 7.223259e-05	ci right 1.040132e-04	k: 121	n:1390000
PYGL   1390000 perm   998 sec   (1393 perm/sec)   p_kst 8.705036e-05   p_cons 8.519108e-01   p_joint 8.705036e-05

Joint ci ratio: 3.548845e-01	ci left: 7.171664e-05	ci right 1.032702e-04	k: 121	n:1400000
Cons ci ratio: 1.380985e-03	ci left: 8.513785e-01	ci right 8.525558e-01	k: 1192755	n:1400000
KS ci ratio: 3.548845e-01	ci left: 7.171664e-05	ci right 1.032702e-04	k: 121	n:1400000
PYGL   1400000 perm   1010 sec   (1386 perm/sec)   p_kst 8.642857e-05   p_cons 8.519679e-01   p_joint 8.642857e-05

Joint ci ratio: 3.548846e-01	ci left: 7.120801e-05	ci right 1.025378e-04	k: 121	n:1410000
Cons ci ratio: 1.376054e-03	ci left: 8.513851e-01	ci right 8.525581e-01	k: 1201281	n:1410000
KS ci ratio: 3.548846e-01	ci left: 7.120801e-05	ci right 1.025378e-04	k: 121	n:1410000
PYGL   1410000 perm   1023 sec   (1379 perm/sec)   p_kst 8.581560e-05   p_cons 8.519723e-01   p_joint 8.581560e-05

Joint ci ratio: 3.534391e-01	ci left: 7.134812e-05	ci right 1.025824e-04	k: 122	n:1420000
Cons ci ratio: 1.371303e-03	ci left: 8.513683e-01	ci right 8.525373e-01	k: 1209774	n:1420000
KS ci ratio: 3.534391e-01	ci left: 7.134812e-05	ci right 1.025824e-04	k: 122	n:1420000
PYGL   1420000 perm   1035 sec   (1372 perm/sec)   p_kst 8.591549e-05   p_cons 8.519535e-01   p_joint 8.591549e-05

Joint ci ratio: 3.534392e-01	ci left: 7.084918e-05	ci right 1.018650e-04	k: 122	n:1430000
Cons ci ratio: 1.366555e-03	ci left: 8.513602e-01	ci right 8.525251e-01	k: 1218279	n:1430000
KS ci ratio: 3.534392e-01	ci left: 7.084918e-05	ci right 1.018650e-04	k: 122	n:1430000
PYGL   1430000 perm   1047 sec   (1365 perm/sec)   p_kst 8.531469e-05   p_cons 8.519434e-01   p_joint 8.531469e-05

Joint ci ratio: 3.520111e-01	ci left: 7.099009e-05	ci right 1.019133e-04	k: 123	n:1440000
Cons ci ratio: 1.361781e-03	ci left: 8.513661e-01	ci right 8.525269e-01	k: 1226804	n:1440000
KS ci ratio: 3.520111e-01	ci left: 7.099009e-05	ci right 1.019133e-04	k: 123	n:1440000
PYGL   1440000 perm   1060 sec   (1358 perm/sec)   p_kst 8.541667e-05   p_cons 8.519472e-01   p_joint 8.541667e-05

Joint ci ratio: 3.506002e-01	ci left: 7.112930e-05	ci right 1.019608e-04	k: 124	n:1450000
Cons ci ratio: 1.357171e-03	ci left: 8.513505e-01	ci right 8.525074e-01	k: 1235298	n:1450000
KS ci ratio: 3.506002e-01	ci left: 7.112930e-05	ci right 1.019608e-04	k: 124	n:1450000
PYGL   1450000 perm   1073 sec   (1351 perm/sec)   p_kst 8.551724e-05   p_cons 8.519297e-01   p_joint 8.551724e-05

Joint ci ratio: 3.506003e-01	ci left: 7.064211e-05	ci right 1.012624e-04	k: 124	n:1460000
Cons ci ratio: 1.352748e-03	ci left: 8.513091e-01	ci right 8.524621e-01	k: 1243754	n:1460000
KS ci ratio: 3.506003e-01	ci left: 7.064211e-05	ci right 1.012624e-04	k: 124	n:1460000
PYGL   1460000 perm   1086 sec   (1344 perm/sec)   p_kst 8.493151e-05   p_cons 8.518863e-01   p_joint 8.493151e-05

Joint ci ratio: 3.506004e-01	ci left: 7.016155e-05	ci right 1.005735e-04	k: 124	n:1470000
Cons ci ratio: 1.348374e-03	ci left: 8.512669e-01	ci right 8.524161e-01	k: 1252208	n:1470000
KS ci ratio: 3.506004e-01	ci left: 7.016155e-05	ci right 1.005735e-04	k: 124	n:1470000
PYGL   1470000 perm   1099 sec   (1338 perm/sec)   p_kst 8.435374e-05   p_cons 8.518422e-01   p_joint 8.435374e-05

Joint ci ratio: 3.506005e-01	ci left: 6.968748e-05	ci right 9.989400e-05	k: 124	n:1480000
Cons ci ratio: 1.343867e-03	ci left: 8.512584e-01	ci right 8.524038e-01	k: 1260711	n:1480000
KS ci ratio: 3.506005e-01	ci left: 6.968748e-05	ci right 9.989400e-05	k: 124	n:1480000
PYGL   1480000 perm   1112 sec   (1331 perm/sec)   p_kst 8.378378e-05   p_cons 8.518318e-01   p_joint 8.378378e-05

Joint ci ratio: 3.492065e-01	ci left: 6.983194e-05	ci right 9.995346e-05	k: 125	n:1490000
Cons ci ratio: 1.339212e-03	ci left: 8.512863e-01	ci right 8.524278e-01	k: 1269268	n:1490000
KS ci ratio: 3.492065e-01	ci left: 6.983194e-05	ci right 9.995346e-05	k: 125	n:1490000
PYGL   1490000 perm   1124 sec   (1325 perm/sec)   p_kst 8.389262e-05   p_cons 8.518577e-01   p_joint 8.389262e-05

Joint ci ratio: 3.478289e-01	ci left: 6.997471e-05	ci right 1.000119e-04	k: 126	n:1500000
Cons ci ratio: 1.334647e-03	ci left: 8.513059e-01	ci right 8.524435e-01	k: 1277813	n:1500000
KS ci ratio: 3.478289e-01	ci left: 6.997471e-05	ci right 1.000119e-04	k: 126	n:1500000
PYGL   1500000 perm   1138 sec   (1319 perm/sec)   p_kst 8.400000e-05   p_cons 8.518753e-01   p_joint 8.400000e-05

Joint ci ratio: 3.478290e-01	ci left: 6.951130e-05	ci right 9.934958e-05	k: 126	n:1510000
Cons ci ratio: 1.330356e-03	ci left: 8.512820e-01	ci right 8.524159e-01	k: 1286293	n:1510000
KS ci ratio: 3.478290e-01	ci left: 6.951130e-05	ci right 9.934958e-05	k: 126	n:1510000
PYGL   1510000 perm   1150 sec   (1313 perm/sec)   p_kst 8.344371e-05   p_cons 8.518497e-01   p_joint 8.344371e-05

Joint ci ratio: 3.478291e-01	ci left: 6.905398e-05	ci right 9.869597e-05	k: 126	n:1520000
Cons ci ratio: 1.325825e-03	ci left: 8.513119e-01	ci right 8.524420e-01	k: 1294854	n:1520000
KS ci ratio: 3.478291e-01	ci left: 6.905398e-05	ci right 9.869597e-05	k: 126	n:1520000
PYGL   1520000 perm   1164 sec   (1306 perm/sec)   p_kst 8.289474e-05   p_cons 8.518776e-01   p_joint 8.289474e-05

Joint ci ratio: 3.478292e-01	ci left: 6.860265e-05	ci right 9.805090e-05	k: 126	n:1530000
Cons ci ratio: 1.321560e-03	ci left: 8.512995e-01	ci right 8.524259e-01	k: 1303351	n:1530000
KS ci ratio: 3.478292e-01	ci left: 6.860265e-05	ci right 9.805090e-05	k: 126	n:1530000
PYGL   1530000 perm   1177 sec   (1300 perm/sec)   p_kst 8.235294e-05   p_cons 8.518634e-01   p_joint 8.235294e-05

Joint ci ratio: 3.478293e-01	ci left: 6.815717e-05	ci right 9.741421e-05	k: 126	n:1540000
Cons ci ratio: 1.317190e-03	ci left: 8.513153e-01	ci right 8.524380e-01	k: 1311891	n:1540000
KS ci ratio: 3.478293e-01	ci left: 6.815717e-05	ci right 9.741421e-05	k: 126	n:1540000
PYGL   1540000 perm   1190 sec   (1294 perm/sec)   p_kst 8.181818e-05   p_cons 8.518773e-01   p_joint 8.181818e-05

Joint ci ratio: 3.451223e-01	ci left: 6.889550e-05	ci right 9.818789e-05	k: 128	n:1550000
Cons ci ratio: 1.312846e-03	ci left: 8.513340e-01	ci right 8.524531e-01	k: 1320436	n:1550000
KS ci ratio: 3.451223e-01	ci left: 6.889550e-05	ci right 9.818789e-05	k: 128	n:1550000
PYGL   1550000 perm   1203 sec   (1288 perm/sec)   p_kst 8.258065e-05   p_cons 8.518942e-01   p_joint 8.258065e-05

Joint ci ratio: 3.451224e-01	ci left: 6.845386e-05	ci right 9.755849e-05	k: 128	n:1560000
Cons ci ratio: 1.308601e-03	ci left: 8.513416e-01	ci right 8.524571e-01	k: 1328964	n:1560000
KS ci ratio: 3.451224e-01	ci left: 6.845386e-05	ci right 9.755849e-05	k: 128	n:1560000
PYGL   1560000 perm   1216 sec   (1283 perm/sec)   p_kst 8.205128e-05   p_cons 8.519000e-01   p_joint 8.205128e-05

Joint ci ratio: 3.451225e-01	ci left: 6.801785e-05	ci right 9.693710e-05	k: 128	n:1570000
Cons ci ratio: 1.304542e-03	ci left: 8.513211e-01	ci right 8.524330e-01	k: 1337448	n:1570000
KS ci ratio: 3.451225e-01	ci left: 6.801785e-05	ci right 9.693710e-05	k: 128	n:1570000
PYGL   1570000 perm   1230 sec   (1277 perm/sec)   p_kst 8.152866e-05   p_cons 8.518777e-01   p_joint 8.152866e-05

Joint ci ratio: 3.437925e-01	ci left: 6.816552e-05	ci right 9.701102e-05	k: 129	n:1580000
Cons ci ratio: 1.300580e-03	ci left: 8.512894e-01	ci right 8.523979e-01	k: 1345914	n:1580000
KS ci ratio: 3.437925e-01	ci left: 6.816552e-05	ci right 9.701102e-05	k: 129	n:1580000
PYGL   1580000 perm   1243 sec   (1271 perm/sec)   p_kst 8.164557e-05   p_cons 8.518443e-01   p_joint 8.164557e-05

Joint ci ratio: 3.424778e-01	ci left: 6.831154e-05	ci right 9.708381e-05	k: 130	n:1590000
Cons ci ratio: 1.296601e-03	ci left: 8.512682e-01	ci right 8.523733e-01	k: 1354396	n:1590000
KS ci ratio: 3.424778e-01	ci left: 6.831154e-05	ci right 9.708381e-05	k: 130	n:1590000
PYGL   1590000 perm   1257 sec   (1265 perm/sec)   p_kst 8.176101e-05   p_cons 8.518214e-01   p_joint 8.176101e-05

Joint ci ratio: 3.411780e-01	ci left: 6.845595e-05	ci right 9.715548e-05	k: 131	n:1600000
Cons ci ratio: 1.292492e-03	ci left: 8.512798e-01	ci right 8.523814e-01	k: 1362930	n:1600000
KS ci ratio: 3.411780e-01	ci left: 6.845595e-05	ci right 9.715548e-05	k: 131	n:1600000
PYGL   1600000 perm   1271 sec   (1259 perm/sec)   p_kst 8.187500e-05   p_cons 8.518313e-01   p_joint 8.187500e-05

Joint ci ratio: 3.398930e-01	ci left: 6.859877e-05	ci right 9.722607e-05	k: 132	n:1610000
Cons ci ratio: 1.288489e-03	ci left: 8.512782e-01	ci right 8.523764e-01	k: 1371443	n:1610000
KS ci ratio: 3.398930e-01	ci left: 6.859877e-05	ci right 9.722607e-05	k: 132	n:1610000
PYGL   1610000 perm   1284 sec   (1254 perm/sec)   p_kst 8.198758e-05   p_cons 8.518280e-01   p_joint 8.198758e-05

Joint ci ratio: 3.386223e-01	ci left: 6.874002e-05	ci right 9.729558e-05	k: 133	n:1620000
Cons ci ratio: 1.284592e-03	ci left: 8.512631e-01	ci right 8.523579e-01	k: 1379934	n:1620000
KS ci ratio: 3.386223e-01	ci left: 6.874002e-05	ci right 9.729558e-05	k: 133	n:1620000
PYGL   1620000 perm   1298 sec   (1248 perm/sec)   p_kst 8.209877e-05   p_cons 8.518111e-01   p_joint 8.209877e-05

Joint ci ratio: 3.386224e-01	ci left: 6.831830e-05	ci right 9.669868e-05	k: 133	n:1630000
Cons ci ratio: 1.280673e-03	ci left: 8.512592e-01	ci right 8.523506e-01	k: 1388443	n:1630000
KS ci ratio: 3.386224e-01	ci left: 6.831830e-05	ci right 9.669868e-05	k: 133	n:1630000
PYGL   1630000 perm   1312 sec   (1243 perm/sec)   p_kst 8.159509e-05   p_cons 8.518055e-01   p_joint 8.159509e-05

Joint ci ratio: 3.386225e-01	ci left: 6.790172e-05	ci right 9.610906e-05	k: 133	n:1640000
Cons ci ratio: 1.276745e-03	ci left: 8.512645e-01	ci right 8.523526e-01	k: 1396967	n:1640000
KS ci ratio: 3.386225e-01	ci left: 6.790172e-05	ci right 9.610906e-05	k: 133	n:1640000
PYGL   1640000 perm   1326 sec   (1237 perm/sec)   p_kst 8.109756e-05   p_cons 8.518091e-01   p_joint 8.109756e-05

Joint ci ratio: 3.361233e-01	ci left: 6.859965e-05	ci right 9.684099e-05	k: 135	n:1650000
Cons ci ratio: 1.272726e-03	ci left: 8.512946e-01	ci right 8.523793e-01	k: 1405532	n:1650000
KS ci ratio: 3.361233e-01	ci left: 6.859965e-05	ci right 9.684099e-05	k: 135	n:1650000
PYGL   1650000 perm   1340 sec   (1232 perm/sec)   p_kst 8.181818e-05   p_cons 8.518376e-01   p_joint 8.181818e-05

Joint ci ratio: 3.336786e-01	ci left: 6.928992e-05	ci right 9.756337e-05	k: 137	n:1660000
Cons ci ratio: 1.268897e-03	ci left: 8.512942e-01	ci right 8.523757e-01	k: 1414047	n:1660000
KS ci ratio: 3.336786e-01	ci left: 6.928992e-05	ci right 9.756337e-05	k: 137	n:1660000
PYGL   1660000 perm   1354 sec   (1226 perm/sec)   p_kst 8.253012e-05   p_cons 8.518355e-01   p_joint 8.253012e-05

Joint ci ratio: 3.312865e-01	ci left: 6.997265e-05	ci right 9.827636e-05	k: 139	n:1670000
Cons ci ratio: 1.264974e-03	ci left: 8.513196e-01	ci right 8.523977e-01	k: 1422605	n:1670000
KS ci ratio: 3.312865e-01	ci left: 6.997265e-05	ci right 9.827636e-05	k: 139	n:1670000
PYGL   1670000 perm   1368 sec   (1221 perm/sec)   p_kst 8.323353e-05   p_cons 8.518593e-01   p_joint 8.323353e-05

Joint ci ratio: 3.301096e-01	ci left: 7.010197e-05	ci right 9.833586e-05	k: 140	n:1680000
Cons ci ratio: 1.261333e-03	ci left: 8.512952e-01	ci right 8.523702e-01	k: 1431080	n:1680000
KS ci ratio: 3.301096e-01	ci left: 7.010197e-05	ci right 9.833586e-05	k: 140	n:1680000
PYGL   1680000 perm   1382 sec   (1215 perm/sec)   p_kst 8.333333e-05   p_cons 8.518333e-01   p_joint 8.333333e-05

Joint ci ratio: 3.301097e-01	ci left: 6.968717e-05	ci right 9.775400e-05	k: 140	n:1690000
Cons ci ratio: 1.257426e-03	ci left: 8.513310e-01	ci right 8.524027e-01	k: 1439656	n:1690000
KS ci ratio: 3.301097e-01	ci left: 6.968717e-05	ci right 9.775400e-05	k: 140	n:1690000
PYGL   1690000 perm   1397 sec   (1210 perm/sec)   p_kst 8.284024e-05   p_cons 8.518675e-01   p_joint 8.284024e-05

Joint ci ratio: 3.289453e-01	ci left: 6.981682e-05	ci right 9.781570e-05	k: 141	n:1700000
Cons ci ratio: 1.253762e-03	ci left: 8.513245e-01	ci right 8.523931e-01	k: 1448161	n:1700000
KS ci ratio: 3.289453e-01	ci left: 6.981682e-05	ci right 9.781570e-05	k: 141	n:1700000
PYGL   1700000 perm   1411 sec   (1205 perm/sec)   p_kst 8.294118e-05   p_cons 8.518594e-01   p_joint 8.294118e-05

Joint ci ratio: 3.289453e-01	ci left: 6.940853e-05	ci right 9.724368e-05	k: 141	n:1710000
Cons ci ratio: 1.250225e-03	ci left: 8.512988e-01	ci right 8.523643e-01	k: 1456633	n:1710000
KS ci ratio: 3.289453e-01	ci left: 6.940853e-05	ci right 9.724368e-05	k: 141	n:1710000
PYGL   1710000 perm   1426 sec   (1199 perm/sec)   p_kst 8.245614e-05   p_cons 8.518322e-01   p_joint 8.245614e-05

Joint ci ratio: 3.289454e-01	ci left: 6.900499e-05	ci right 9.667832e-05	k: 141	n:1720000
Cons ci ratio: 1.246569e-03	ci left: 8.513037e-01	ci right 8.523661e-01	k: 1465157	n:1720000
KS ci ratio: 3.289454e-01	ci left: 6.900499e-05	ci right 9.667832e-05	k: 141	n:1720000
PYGL   1720000 perm   1441 sec   (1194 perm/sec)   p_kst 8.197674e-05   p_cons 8.518355e-01   p_joint 8.197674e-05

Joint ci ratio: 3.277932e-01	ci left: 6.913651e-05	ci right 9.674500e-05	k: 142	n:1730000
Cons ci ratio: 1.243016e-03	ci left: 8.512940e-01	ci right 8.523534e-01	k: 1473656	n:1730000
KS ci ratio: 3.277932e-01	ci left: 6.913651e-05	ci right 9.674500e-05	k: 142	n:1730000
PYGL   1730000 perm   1455 sec   (1189 perm/sec)   p_kst 8.208092e-05   p_cons 8.518243e-01   p_joint 8.208092e-05

Joint ci ratio: 3.277933e-01	ci left: 6.873917e-05	ci right 9.618900e-05	k: 142	n:1740000
Cons ci ratio: 1.239395e-03	ci left: 8.513046e-01	ci right 8.523609e-01	k: 1482190	n:1740000
KS ci ratio: 3.277933e-01	ci left: 6.873917e-05	ci right 9.618900e-05	k: 142	n:1740000
PYGL   1740000 perm   1470 sec   (1184 perm/sec)   p_kst 8.160920e-05   p_cons 8.518333e-01   p_joint 8.160920e-05

Joint ci ratio: 3.266531e-01	ci left: 6.887087e-05	ci right 9.625755e-05	k: 143	n:1750000
Cons ci ratio: 1.235908e-03	ci left: 8.512939e-01	ci right 8.523472e-01	k: 1490687	n:1750000
KS ci ratio: 3.266531e-01	ci left: 6.887087e-05	ci right 9.625755e-05	k: 143	n:1750000
PYGL   1750000 perm   1485 sec   (1179 perm/sec)   p_kst 8.171429e-05   p_cons 8.518211e-01   p_joint 8.171429e-05

Joint ci ratio: 3.244080e-01	ci left: 6.952307e-05	ci right 9.693953e-05	k: 145	n:1760000
Cons ci ratio: 1.232473e-03	ci left: 8.512788e-01	ci right 8.523292e-01	k: 1499176	n:1760000
KS ci ratio: 3.244080e-01	ci left: 6.952307e-05	ci right 9.693953e-05	k: 145	n:1760000
PYGL   1760000 perm   1499 sec   (1174 perm/sec)   p_kst 8.238636e-05   p_cons 8.518045e-01   p_joint 8.238636e-05

Joint ci ratio: 3.222085e-01	ci left: 7.016854e-05	ci right 9.761317e-05	k: 147	n:1770000
Cons ci ratio: 1.228888e-03	ci left: 8.513006e-01	ci right 8.523480e-01	k: 1507730	n:1770000
KS ci ratio: 3.222085e-01	ci left: 7.016854e-05	ci right 9.761317e-05	k: 147	n:1770000
PYGL   1770000 perm   1514 sec   (1169 perm/sec)   p_kst 8.305085e-05   p_cons 8.518249e-01   p_joint 8.305085e-05

Joint ci ratio: 3.211254e-01	ci left: 7.029078e-05	ci right 9.767178e-05	k: 148	n:1780000
Cons ci ratio: 1.225590e-03	ci left: 8.512693e-01	ci right 8.523138e-01	k: 1516190	n:1780000
KS ci ratio: 3.211254e-01	ci left: 7.029078e-05	ci right 9.767178e-05	k: 148	n:1780000
PYGL   1780000 perm   1530 sec   (1164 perm/sec)   p_kst 8.314607e-05   p_cons 8.517921e-01   p_joint 8.314607e-05

Joint ci ratio: 3.200532e-01	ci left: 7.041180e-05	ci right 9.772959e-05	k: 149	n:1790000
Cons ci ratio: 1.222137e-03	ci left: 8.512759e-01	ci right 8.523174e-01	k: 1524717	n:1790000
KS ci ratio: 3.200532e-01	ci left: 7.041180e-05	ci right 9.772959e-05	k: 149	n:1790000
PYGL   1790000 perm   1545 sec   (1159 perm/sec)   p_kst 8.324022e-05   p_cons 8.517972e-01   p_joint 8.324022e-05

Joint ci ratio: 3.200532e-01	ci left: 7.002062e-05	ci right 9.718665e-05	k: 149	n:1800000
Cons ci ratio: 1.218644e-03	ci left: 8.512968e-01	ci right 8.523354e-01	k: 1533270	n:1800000
KS ci ratio: 3.200532e-01	ci left: 7.002062e-05	ci right 9.718665e-05	k: 149	n:1800000
PYGL   1800000 perm   1560 sec   (1154 perm/sec)   p_kst 8.277778e-05   p_cons 8.518167e-01   p_joint 8.277778e-05

Joint ci ratio: 3.200533e-01	ci left: 6.963377e-05	ci right 9.664971e-05	k: 149	n:1810000
Cons ci ratio: 1.215068e-03	ci left: 8.513408e-01	ci right 8.523764e-01	k: 1541865	n:1810000
KS ci ratio: 3.200533e-01	ci left: 6.963377e-05	ci right 9.664971e-05	k: 149	n:1810000
PYGL   1810000 perm   1575 sec   (1149 perm/sec)   p_kst 8.232044e-05   p_cons 8.518591e-01   p_joint 8.232044e-05

Joint ci ratio: 3.200534e-01	ci left: 6.925116e-05	ci right 9.611867e-05	k: 149	n:1820000
Cons ci ratio: 1.211703e-03	ci left: 8.513468e-01	ci right 8.523795e-01	k: 1550392	n:1820000
KS ci ratio: 3.200534e-01	ci left: 6.925116e-05	ci right 9.611867e-05	k: 149	n:1820000
PYGL   1820000 perm   1590 sec   (1144 perm/sec)   p_kst 8.186813e-05   p_cons 8.518637e-01   p_joint 8.186813e-05

Joint ci ratio: 3.189918e-01	ci left: 6.937537e-05	ci right 9.618356e-05	k: 150	n:1830000
Cons ci ratio: 1.208531e-03	ci left: 8.513183e-01	ci right 8.523483e-01	k: 1558856	n:1830000
KS ci ratio: 3.189918e-01	ci left: 6.937537e-05	ci right 9.618356e-05	k: 150	n:1830000
PYGL   1830000 perm   1606 sec   (1140 perm/sec)   p_kst 8.196721e-05   p_cons 8.518339e-01   p_joint 8.196721e-05

Joint ci ratio: 3.179408e-01	ci left: 6.949837e-05	ci right 9.624760e-05	k: 151	n:1840000
Cons ci ratio: 1.205243e-03	ci left: 8.513195e-01	ci right 8.523467e-01	k: 1567374	n:1840000
KS ci ratio: 3.179408e-01	ci left: 6.949837e-05	ci right 9.624760e-05	k: 151	n:1840000
PYGL   1840000 perm   1621 sec   (1135 perm/sec)   p_kst 8.206522e-05   p_cons 8.518337e-01   p_joint 8.206522e-05

Joint ci ratio: 3.169000e-01	ci left: 6.962019e-05	ci right 9.631080e-05	k: 152	n:1850000
Cons ci ratio: 1.201934e-03	ci left: 8.513310e-01	ci right 8.523554e-01	k: 1575911	n:1850000
KS ci ratio: 3.169000e-01	ci left: 6.962019e-05	ci right 9.631080e-05	k: 152	n:1850000
PYGL   1850000 perm   1637 sec   (1130 perm/sec)   p_kst 8.216216e-05   p_cons 8.518438e-01   p_joint 8.216216e-05

Joint ci ratio: 3.169001e-01	ci left: 6.924588e-05	ci right 9.579300e-05	k: 152	n:1860000
Cons ci ratio: 1.198743e-03	ci left: 8.513230e-01	ci right 8.523447e-01	k: 1584412	n:1860000
KS ci ratio: 3.169001e-01	ci left: 6.924588e-05	ci right 9.579300e-05	k: 152	n:1860000
PYGL   1860000 perm   1652 sec   (1126 perm/sec)   p_kst 8.172043e-05   p_cons 8.518344e-01   p_joint 8.172043e-05

Joint ci ratio: 3.169002e-01	ci left: 6.887558e-05	ci right 9.528074e-05	k: 152	n:1870000
Cons ci ratio: 1.195572e-03	ci left: 8.513162e-01	ci right 8.523351e-01	k: 1592915	n:1870000
KS ci ratio: 3.169002e-01	ci left: 6.887558e-05	ci right 9.528074e-05	k: 152	n:1870000
PYGL   1870000 perm   1668 sec   (1121 perm/sec)   p_kst 8.128342e-05   p_cons 8.518262e-01   p_joint 8.128342e-05

Joint ci ratio: 3.169002e-01	ci left: 6.850922e-05	ci right 9.477394e-05	k: 152	n:1880000
Cons ci ratio: 1.192474e-03	ci left: 8.512993e-01	ci right 8.523156e-01	k: 1601399	n:1880000
KS ci ratio: 3.169002e-01	ci left: 6.850922e-05	ci right 9.477394e-05	k: 152	n:1880000
PYGL   1880000 perm   1684 sec   (1116 perm/sec)   p_kst 8.085106e-05   p_cons 8.518080e-01   p_joint 8.085106e-05

Joint ci ratio: 3.148490e-01	ci left: 6.912106e-05	ci right 9.541429e-05	k: 154	n:1890000
Cons ci ratio: 1.189335e-03	ci left: 8.512964e-01	ci right 8.523100e-01	k: 1609909	n:1890000
KS ci ratio: 3.148490e-01	ci left: 6.912106e-05	ci right 9.541429e-05	k: 154	n:1890000
PYGL   1890000 perm   1700 sec   (1112 perm/sec)   p_kst 8.148148e-05   p_cons 8.518037e-01   p_joint 8.148148e-05

Joint ci ratio: 3.138382e-01	ci left: 6.924207e-05	ci right 9.547981e-05	k: 155	n:1900000
Cons ci ratio: 1.186261e-03	ci left: 8.512850e-01	ci right 8.522960e-01	k: 1618403	n:1900000
KS ci ratio: 3.138382e-01	ci left: 6.924207e-05	ci right 9.547981e-05	k: 155	n:1900000
PYGL   1900000 perm   1716 sec   (1107 perm/sec)   p_kst 8.157895e-05   p_cons 8.517911e-01   p_joint 8.157895e-05

Joint ci ratio: 3.108632e-01	ci left: 7.032713e-05	ci right 9.667331e-05	k: 158	n:1910000
Cons ci ratio: 1.182950e-03	ci left: 8.513294e-01	ci right 8.523376e-01	k: 1627003	n:1910000
KS ci ratio: 3.108632e-01	ci left: 7.032713e-05	ci right 9.667331e-05	k: 158	n:1910000
PYGL   1910000 perm   1732 sec   (1103 perm/sec)   p_kst 8.272251e-05   p_cons 8.518340e-01   p_joint 8.272251e-05

Joint ci ratio: 3.108633e-01	ci left: 6.996084e-05	ci right 9.616981e-05	k: 158	n:1920000
Cons ci ratio: 1.179961e-03	ci left: 8.513102e-01	ci right 8.523158e-01	k: 1635482	n:1920000
KS ci ratio: 3.108633e-01	ci left: 6.996084e-05	ci right 9.616981e-05	k: 158	n:1920000
PYGL   1920000 perm   1748 sec   (1098 perm/sec)   p_kst 8.229167e-05   p_cons 8.518135e-01   p_joint 8.229167e-05

Joint ci ratio: 3.108633e-01	ci left: 6.959835e-05	ci right 9.567152e-05	k: 158	n:1930000
Cons ci ratio: 1.176889e-03	ci left: 8.513140e-01	ci right 8.523170e-01	k: 1644005	n:1930000
KS ci ratio: 3.108633e-01	ci left: 6.959835e-05	ci right 9.567152e-05	k: 158	n:1930000
PYGL   1930000 perm   1765 sec   (1094 perm/sec)   p_kst 8.186528e-05   p_cons 8.518161e-01   p_joint 8.186528e-05

Joint ci ratio: 3.089264e-01	ci left: 7.019036e-05	ci right 9.628921e-05	k: 160	n:1940000
Cons ci ratio: 1.173674e-03	ci left: 8.513535e-01	ci right 8.523537e-01	k: 1652597	n:1940000
KS ci ratio: 3.089264e-01	ci left: 7.019036e-05	ci right 9.628921e-05	k: 160	n:1940000
PYGL   1940000 perm   1781 sec   (1089 perm/sec)   p_kst 8.247423e-05   p_cons 8.518541e-01   p_joint 8.247423e-05

Joint ci ratio: 3.079714e-01	ci left: 7.030355e-05	ci right 9.634780e-05	k: 161	n:1950000
Cons ci ratio: 1.170810e-03	ci left: 8.513226e-01	ci right 8.523204e-01	k: 1661053	n:1950000
KS ci ratio: 3.079714e-01	ci left: 7.030355e-05	ci right 9.634780e-05	k: 161	n:1950000
PYGL   1950000 perm   1798 sec   (1085 perm/sec)   p_kst 8.256410e-05   p_cons 8.518221e-01   p_joint 8.256410e-05

Joint ci ratio: 3.079715e-01	ci left: 6.994485e-05	ci right 9.585623e-05	k: 161	n:1960000
Cons ci ratio: 1.167718e-03	ci left: 8.513458e-01	ci right 8.523410e-01	k: 1669614	n:1960000
KS ci ratio: 3.079715e-01	ci left: 6.994485e-05	ci right 9.585623e-05	k: 161	n:1960000
PYGL   1960000 perm   1814 sec   (1080 perm/sec)   p_kst 8.214286e-05   p_cons 8.518439e-01   p_joint 8.214286e-05

Joint ci ratio: 3.079715e-01	ci left: 6.958980e-05	ci right 9.536966e-05	k: 161	n:1970000
Cons ci ratio: 1.164728e-03	ci left: 8.513519e-01	ci right 8.523445e-01	k: 1678142	n:1970000
KS ci ratio: 3.079715e-01	ci left: 6.958980e-05	ci right 9.536966e-05	k: 161	n:1970000
PYGL   1970000 perm   1831 sec   (1076 perm/sec)   p_kst 8.172589e-05   p_cons 8.518487e-01   p_joint 8.172589e-05

Joint ci ratio: 3.079716e-01	ci left: 6.923833e-05	ci right 9.488800e-05	k: 161	n:1980000
Cons ci ratio: 1.161803e-03	ci left: 8.513488e-01	ci right 8.523390e-01	k: 1686652	n:1980000
KS ci ratio: 3.079716e-01	ci left: 6.923833e-05	ci right 9.488800e-05	k: 161	n:1980000
PYGL   1980000 perm   1848 sec   (1072 perm/sec)   p_kst 8.131313e-05   p_cons 8.518444e-01   p_joint 8.131313e-05

Joint ci ratio: 3.070254e-01	ci left: 6.935415e-05	ci right 9.495234e-05	k: 162	n:1990000
Cons ci ratio: 1.158796e-03	ci left: 8.513685e-01	ci right 8.523561e-01	k: 1695207	n:1990000
KS ci ratio: 3.070254e-01	ci left: 6.935415e-05	ci right 9.495234e-05	k: 162	n:1990000
PYGL   1990000 perm   1864 sec   (1067 perm/sec)   p_kst 8.140704e-05   p_cons 8.518628e-01   p_joint 8.140704e-05

Joint ci ratio: 3.051589e-01	ci left: 6.993059e-05	ci right 9.555413e-05	k: 164	n:2000000
Cons ci ratio: 1.156057e-03	ci left: 8.513344e-01	ci right 8.523196e-01	k: 1703655	n:2000000
KS ci ratio: 3.051589e-01	ci left: 6.993059e-05	ci right 9.555413e-05	k: 164	n:2000000
PYGL   2000000 perm   1881 sec   (1063 perm/sec)   p_kst 8.200000e-05   p_cons 8.518275e-01   p_joint 8.200000e-05

Joint ci ratio: 3.051590e-01	ci left: 6.958267e-05	ci right 9.507874e-05	k: 164	n:2010000
Cons ci ratio: 1.153181e-03	ci left: 8.513350e-01	ci right 8.523178e-01	k: 1712172	n:2010000
KS ci ratio: 3.051590e-01	ci left: 6.958267e-05	ci right 9.507874e-05	k: 164	n:2010000
PYGL   2010000 perm   1898 sec   (1059 perm/sec)   p_kst 8.159204e-05   p_cons 8.518269e-01   p_joint 8.159204e-05

Joint ci ratio: 3.051590e-01	ci left: 6.923820e-05	ci right 9.460806e-05	k: 164	n:2020000
Cons ci ratio: 1.150206e-03	ci left: 8.513618e-01	ci right 8.523421e-01	k: 1720742	n:2020000
KS ci ratio: 3.051590e-01	ci left: 6.923820e-05	ci right 9.460806e-05	k: 164	n:2020000
PYGL   2020000 perm   1915 sec   (1055 perm/sec)   p_kst 8.118812e-05   p_cons 8.518525e-01   p_joint 8.118812e-05

Joint ci ratio: 3.042385e-01	ci left: 6.935208e-05	ci right 9.467216e-05	k: 165	n:2030000
Cons ci ratio: 1.147487e-03	ci left: 8.513371e-01	ci right 8.523151e-01	k: 1729208	n:2030000
KS ci ratio: 3.042385e-01	ci left: 6.935208e-05	ci right 9.467216e-05	k: 165	n:2030000
PYGL   2030000 perm   1931 sec   (1051 perm/sec)   p_kst 8.128079e-05   p_cons 8.518266e-01   p_joint 8.128079e-05

Joint ci ratio: 3.042386e-01	ci left: 6.901212e-05	ci right 9.420809e-05	k: 165	n:2040000
Cons ci ratio: 1.144734e-03	ci left: 8.513245e-01	ci right 8.523000e-01	k: 1737698	n:2040000
KS ci ratio: 3.042386e-01	ci left: 6.901212e-05	ci right 9.420809e-05	k: 165	n:2040000
PYGL   2040000 perm   1948 sec   (1047 perm/sec)   p_kst 8.088235e-05   p_cons 8.518127e-01   p_joint 8.088235e-05

Joint ci ratio: 3.042386e-01	ci left: 6.867547e-05	ci right 9.374854e-05	k: 165	n:2050000
Cons ci ratio: 1.141837e-03	ci left: 8.513481e-01	ci right 8.523212e-01	k: 1746262	n:2050000
KS ci ratio: 3.042386e-01	ci left: 6.867547e-05	ci right 9.374854e-05	k: 165	n:2050000
PYGL   2050000 perm   1966 sec   (1043 perm/sec)   p_kst 8.048780e-05   p_cons 8.518351e-01   p_joint 8.048780e-05

Joint ci ratio: 3.033263e-01	ci left: 6.879054e-05	ci right 9.381577e-05	k: 166	n:2060000
Cons ci ratio: 1.139044e-03	ci left: 8.513535e-01	ci right 8.523242e-01	k: 1754789	n:2060000
KS ci ratio: 3.033263e-01	ci left: 6.879054e-05	ci right 9.381577e-05	k: 166	n:2060000
PYGL   2060000 perm   1983 sec   (1039 perm/sec)   p_kst 8.058252e-05   p_cons 8.518393e-01   p_joint 8.058252e-05

Joint ci ratio: 3.033264e-01	ci left: 6.845821e-05	ci right 9.336256e-05	k: 166	n:2070000
Cons ci ratio: 1.136246e-03	ci left: 8.513641e-01	ci right 8.523325e-01	k: 1763327	n:2070000
KS ci ratio: 3.033264e-01	ci left: 6.845821e-05	ci right 9.336256e-05	k: 166	n:2070000
PYGL   2070000 perm   2002 sec   (1034 perm/sec)   p_kst 8.019324e-05   p_cons 8.518488e-01   p_joint 8.019324e-05

Joint ci ratio: 3.033265e-01	ci left: 6.812908e-05	ci right 9.291370e-05	k: 166	n:2080000
Cons ci ratio: 1.133502e-03	ci left: 8.513675e-01	ci right 8.523335e-01	k: 1771850	n:2080000
KS ci ratio: 3.033265e-01	ci left: 6.812908e-05	ci right 9.291370e-05	k: 166	n:2080000
PYGL   2080000 perm   2019 sec   (1030 perm/sec)   p_kst 7.980769e-05   p_cons 8.518510e-01   p_joint 7.980769e-05

Joint ci ratio: 3.024223e-01	ci left: 6.824522e-05	ci right 9.298386e-05	k: 167	n:2090000
Cons ci ratio: 1.130795e-03	ci left: 8.513669e-01	ci right 8.523307e-01	k: 1780365	n:2090000
KS ci ratio: 3.024223e-01	ci left: 6.824522e-05	ci right 9.298386e-05	k: 167	n:2090000
PYGL   2090000 perm   2037 sec   (1026 perm/sec)   p_kst 7.990431e-05   p_cons 8.518493e-01   p_joint 7.990431e-05

Joint ci ratio: 3.024224e-01	ci left: 6.792024e-05	ci right 9.254108e-05	k: 167	n:2100000
Cons ci ratio: 1.127985e-03	ci left: 8.513936e-01	ci right 8.523550e-01	k: 1788937	n:2100000
KS ci ratio: 3.024224e-01	ci left: 6.792024e-05	ci right 9.254108e-05	k: 167	n:2100000
PYGL   2100000 perm   2054 sec   (1022 perm/sec)   p_kst 7.952381e-05   p_cons 8.518748e-01   p_joint 7.952381e-05

Joint ci ratio: 3.024225e-01	ci left: 6.759835e-05	ci right 9.210250e-05	k: 167	n:2110000
Cons ci ratio: 1.125351e-03	ci left: 8.513854e-01	ci right 8.523445e-01	k: 1797436	n:2110000
KS ci ratio: 3.024225e-01	ci left: 6.759835e-05	ci right 9.210250e-05	k: 167	n:2110000
PYGL   2110000 perm   2072 sec   (1018 perm/sec)   p_kst 7.914692e-05   p_cons 8.518654e-01   p_joint 7.914692e-05

Joint ci ratio: 3.015264e-01	ci left: 6.771545e-05	ci right 9.217538e-05	k: 168	n:2120000
Cons ci ratio: 1.122571e-03	ci left: 8.514141e-01	ci right 8.523708e-01	k: 1806013	n:2120000
KS ci ratio: 3.015264e-01	ci left: 6.771545e-05	ci right 9.217538e-05	k: 168	n:2120000
PYGL   2120000 perm   2089 sec   (1015 perm/sec)   p_kst 7.924528e-05   p_cons 8.518929e-01   p_joint 7.924528e-05

Joint ci ratio: 3.006382e-01	ci left: 6.783156e-05	ci right 9.224747e-05	k: 169	n:2130000
Cons ci ratio: 1.119976e-03	ci left: 8.514054e-01	ci right 8.523599e-01	k: 1814511	n:2130000
KS ci ratio: 3.006382e-01	ci left: 6.783156e-05	ci right 9.224747e-05	k: 169	n:2130000
PYGL   2130000 perm   2107 sec   (1011 perm/sec)   p_kst 7.934272e-05   p_cons 8.518831e-01   p_joint 7.934272e-05

Joint ci ratio: 2.997578e-01	ci left: 6.794669e-05	ci right 9.231879e-05	k: 170	n:2140000
Cons ci ratio: 1.117371e-03	ci left: 8.514033e-01	ci right 8.523556e-01	k: 1823023	n:2140000
KS ci ratio: 2.997578e-01	ci left: 6.794669e-05	ci right 9.231879e-05	k: 170	n:2140000
PYGL   2140000 perm   2125 sec   (1007 perm/sec)   p_kst 7.943925e-05   p_cons 8.518799e-01   p_joint 7.943925e-05

Joint ci ratio: 2.980200e-01	ci left: 6.849115e-05	ci right 9.288917e-05	k: 172	n:2150000
Cons ci ratio: 1.114662e-03	ci left: 8.514287e-01	ci right 8.523787e-01	k: 1831594	n:2150000
KS ci ratio: 2.980200e-01	ci left: 6.849115e-05	ci right 9.288917e-05	k: 172	n:2150000
PYGL   2150000 perm   2143 sec   (1003 perm/sec)   p_kst 8.000000e-05   p_cons 8.519042e-01   p_joint 8.000000e-05

Joint ci ratio: 2.954690e-01	ci left: 6.945958e-05	ci right 9.395110e-05	k: 175	n:2160000
Cons ci ratio: 1.111987e-03	ci left: 8.514506e-01	ci right 8.523984e-01	k: 1840158	n:2160000
KS ci ratio: 2.954690e-01	ci left: 6.945958e-05	ci right 9.395110e-05	k: 175	n:2160000
PYGL   2160000 perm   2161 sec   (1000 perm/sec)   p_kst 8.101852e-05   p_cons 8.519250e-01   p_joint 8.101852e-05

Joint ci ratio: 2.946332e-01	ci left: 6.956622e-05	ci right 9.401298e-05	k: 176	n:2170000
Cons ci ratio: 1.109309e-03	ci left: 8.514775e-01	ci right 8.524230e-01	k: 1848733	n:2170000
KS ci ratio: 2.946332e-01	ci left: 6.956622e-05	ci right 9.401298e-05	k: 176	n:2170000
PYGL   2170000 perm   2178 sec   (996 perm/sec)   p_kst 8.110599e-05   p_cons 8.519507e-01   p_joint 8.110599e-05

Joint ci ratio: 2.938044e-01	ci left: 6.967197e-05	ci right 9.407420e-05	k: 177	n:2180000
Cons ci ratio: 1.106698e-03	ci left: 8.514930e-01	ci right 8.524363e-01	k: 1857284	n:2180000
KS ci ratio: 2.938044e-01	ci left: 6.967197e-05	ci right 9.407420e-05	k: 177	n:2180000
PYGL   2180000 perm   2196 sec   (993 perm/sec)   p_kst 8.119266e-05   p_cons 8.519651e-01   p_joint 8.119266e-05

Joint ci ratio: 2.929825e-01	ci left: 6.977685e-05	ci right 9.413477e-05	k: 178	n:2190000
Cons ci ratio: 1.104286e-03	ci left: 8.514673e-01	ci right 8.524085e-01	k: 1865745	n:2190000
KS ci ratio: 2.929825e-01	ci left: 6.977685e-05	ci right 9.413477e-05	k: 178	n:2190000
PYGL   2190000 perm   2214 sec   (989 perm/sec)   p_kst 8.127854e-05   p_cons 8.519384e-01   p_joint 8.127854e-05

Joint ci ratio: 2.913593e-01	ci left: 7.030216e-05	ci right 9.468240e-05	k: 180	n:2200000
Cons ci ratio: 1.101800e-03	ci left: 8.514623e-01	ci right 8.524014e-01	k: 1874251	n:2200000
KS ci ratio: 2.913593e-01	ci left: 7.030216e-05	ci right 9.468240e-05	k: 180	n:2200000
PYGL   2200000 perm   2232 sec   (986 perm/sec)   p_kst 8.181818e-05   p_cons 8.519323e-01   p_joint 8.181818e-05

Joint ci ratio: 2.913593e-01	ci left: 6.998405e-05	ci right 9.425398e-05	k: 180	n:2210000
Cons ci ratio: 1.099261e-03	ci left: 8.514731e-01	ci right 8.524101e-01	k: 1882792	n:2210000
KS ci ratio: 2.913593e-01	ci left: 6.998405e-05	ci right 9.425398e-05	k: 180	n:2210000
PYGL   2210000 perm   2250 sec   (982 perm/sec)   p_kst 8.144796e-05   p_cons 8.519421e-01   p_joint 8.144796e-05

Joint ci ratio: 2.905578e-01	ci left: 7.008639e-05	ci right 9.431264e-05	k: 181	n:2220000
Cons ci ratio: 1.096958e-03	ci left: 8.514339e-01	ci right 8.523688e-01	k: 1891222	n:2220000
KS ci ratio: 2.905578e-01	ci left: 7.008639e-05	ci right 9.431264e-05	k: 181	n:2220000
PYGL   2220000 perm   2269 sec   (979 perm/sec)   p_kst 8.153153e-05   p_cons 8.519018e-01   p_joint 8.153153e-05

Joint ci ratio: 2.897628e-01	ci left: 7.018790e-05	ci right 9.437069e-05	k: 182	n:2230000
Cons ci ratio: 1.094501e-03	ci left: 8.514336e-01	ci right 8.523664e-01	k: 1899738	n:2230000
KS ci ratio: 2.897628e-01	ci left: 7.018790e-05	ci right 9.437069e-05	k: 182	n:2230000
PYGL   2230000 perm   2287 sec   (975 perm/sec)   p_kst 8.161435e-05   p_cons 8.519004e-01   p_joint 8.161435e-05

Joint ci ratio: 2.889743e-01	ci left: 7.028859e-05	ci right 9.442813e-05	k: 183	n:2240000
Cons ci ratio: 1.092036e-03	ci left: 8.514391e-01	ci right 8.523698e-01	k: 1908267	n:2240000
KS ci ratio: 2.889743e-01	ci left: 7.028859e-05	ci right 9.442813e-05	k: 183	n:2240000
PYGL   2240000 perm   2305 sec   (972 perm/sec)   p_kst 8.169643e-05   p_cons 8.519049e-01   p_joint 8.169643e-05

Joint ci ratio: 2.881922e-01	ci left: 7.038847e-05	ci right 9.448498e-05	k: 184	n:2250000
Cons ci ratio: 1.089553e-03	ci left: 8.514526e-01	ci right 8.523812e-01	k: 1916814	n:2250000
KS ci ratio: 2.881922e-01	ci left: 7.038847e-05	ci right 9.448498e-05	k: 184	n:2250000
PYGL   2250000 perm   2324 sec   (968 perm/sec)   p_kst 8.177778e-05   p_cons 8.519173e-01   p_joint 8.177778e-05

Joint ci ratio: 2.866469e-01	ci left: 7.089819e-05	ci right 9.501547e-05	k: 186	n:2260000
Cons ci ratio: 1.087102e-03	ci left: 8.514624e-01	ci right 8.523889e-01	k: 1925353	n:2260000
KS ci ratio: 2.866469e-01	ci left: 7.089819e-05	ci right 9.501547e-05	k: 186	n:2260000
PYGL   2260000 perm   2342 sec   (965 perm/sec)   p_kst 8.230088e-05   p_cons 8.519261e-01   p_joint 8.230088e-05

Joint ci ratio: 2.858835e-01	ci left: 7.099477e-05	ci right 9.506897e-05	k: 187	n:2270000
Cons ci ratio: 1.084730e-03	ci left: 8.514576e-01	ci right 8.523821e-01	k: 1933859	n:2270000
KS ci ratio: 2.858835e-01	ci left: 7.099477e-05	ci right 9.506897e-05	k: 187	n:2270000
PYGL   2270000 perm   2361 sec   (962 perm/sec)   p_kst 8.237885e-05   p_cons 8.519203e-01   p_joint 8.237885e-05

Joint ci ratio: 2.843748e-01	ci left: 7.149786e-05	ci right 9.559175e-05	k: 189	n:2280000
Cons ci ratio: 1.082306e-03	ci left: 8.514686e-01	ci right 8.523911e-01	k: 1942401	n:2280000
KS ci ratio: 2.843748e-01	ci left: 7.149786e-05	ci right 9.559175e-05	k: 189	n:2280000
PYGL   2280000 perm   2379 sec   (958 perm/sec)   p_kst 8.289474e-05   p_cons 8.519303e-01   p_joint 8.289474e-05

Joint ci ratio: 2.843748e-01	ci left: 7.118564e-05	ci right 9.517432e-05	k: 189	n:2290000
Cons ci ratio: 1.079873e-03	ci left: 8.514852e-01	ci right 8.524056e-01	k: 1950956	n:2290000
KS ci ratio: 2.843748e-01	ci left: 7.118564e-05	ci right 9.517432e-05	k: 189	n:2290000
PYGL   2290000 perm   2398 sec   (955 perm/sec)   p_kst 8.253275e-05   p_cons 8.519459e-01   p_joint 8.253275e-05

Joint ci ratio: 2.828898e-01	ci left: 7.168386e-05	ci right 9.569177e-05	k: 191	n:2300000
Cons ci ratio: 1.077546e-03	ci left: 8.514808e-01	ci right 8.523992e-01	k: 1959463	n:2300000
KS ci ratio: 2.828898e-01	ci left: 7.168386e-05	ci right 9.569177e-05	k: 191	n:2300000
PYGL   2300000 perm   2417 sec   (952 perm/sec)   p_kst 8.304348e-05   p_cons 8.519404e-01   p_joint 8.304348e-05

Joint ci ratio: 2.821559e-01	ci left: 7.177578e-05	ci right 9.574101e-05	k: 192	n:2310000
Cons ci ratio: 1.075140e-03	ci left: 8.514985e-01	ci right 8.524149e-01	k: 1968021	n:2310000
KS ci ratio: 2.821559e-01	ci left: 7.177578e-05	ci right 9.574101e-05	k: 192	n:2310000
PYGL   2310000 perm   2436 sec   (948 perm/sec)   p_kst 8.311688e-05   p_cons 8.519571e-01   p_joint 8.311688e-05

Joint ci ratio: 2.821560e-01	ci left: 7.146640e-05	ci right 9.532833e-05	k: 192	n:2320000
Cons ci ratio: 1.072893e-03	ci left: 8.514824e-01	ci right 8.523969e-01	k: 1976501	n:2320000
KS ci ratio: 2.821560e-01	ci left: 7.146640e-05	ci right 9.532833e-05	k: 192	n:2320000
PYGL   2320000 perm   2456 sec   (945 perm/sec)   p_kst 8.275862e-05   p_cons 8.519401e-01   p_joint 8.275862e-05

Joint ci ratio: 2.821560e-01	ci left: 7.115967e-05	ci right 9.491920e-05	k: 192	n:2330000
Cons ci ratio: 1.070547e-03	ci left: 8.514931e-01	ci right 8.524056e-01	k: 1985043	n:2330000
KS ci ratio: 2.821560e-01	ci left: 7.115967e-05	ci right 9.491920e-05	k: 192	n:2330000
PYGL   2330000 perm   2475 sec   (942 perm/sec)   p_kst 8.240343e-05   p_cons 8.519498e-01   p_joint 8.240343e-05

Joint ci ratio: 2.807053e-01	ci left: 7.164996e-05	ci right 9.542842e-05	k: 194	n:2340000
Cons ci ratio: 1.068247e-03	ci left: 8.514964e-01	ci right 8.524070e-01	k: 1993568	n:2340000
KS ci ratio: 2.807053e-01	ci left: 7.164996e-05	ci right 9.542842e-05	k: 194	n:2340000
PYGL   2340000 perm   2494 sec   (938 perm/sec)   p_kst 8.290598e-05   p_cons 8.519521e-01   p_joint 8.290598e-05

Joint ci ratio: 2.807053e-01	ci left: 7.134506e-05	ci right 9.502235e-05	k: 194	n:2350000
Cons ci ratio: 1.065951e-03	ci left: 8.515023e-01	ci right 8.524109e-01	k: 2002099	n:2350000
KS ci ratio: 2.807053e-01	ci left: 7.134506e-05	ci right 9.502235e-05	k: 194	n:2350000
PYGL   2350000 perm   2513 sec   (935 perm/sec)   p_kst 8.255319e-05   p_cons 8.519570e-01   p_joint 8.255319e-05

Joint ci ratio: 2.785705e-01	ci left: 7.222481e-05	ci right 9.597980e-05	k: 197	n:2360000
Cons ci ratio: 1.088323e-03	ci left: 8.456275e-01	ci right 8.465487e-01	k: 1996769	n:2360000
KS ci ratio: 2.785705e-01	ci left: 7.222481e-05	ci right 9.597980e-05	k: 197	n:2360000
PYGL   2360000 perm   2532 sec   (932 perm/sec)   p_kst 8.347458e-05   p_cons 8.460886e-01   p_joint 8.347458e-05

Joint ci ratio: 2.785706e-01	ci left: 7.192007e-05	ci right 9.557482e-05	k: 197	n:2370000
Cons ci ratio: 1.086053e-03	ci left: 8.456218e-01	ci right 8.465411e-01	k: 2005214	n:2370000
KS ci ratio: 2.785706e-01	ci left: 7.192007e-05	ci right 9.557482e-05	k: 197	n:2370000
PYGL   2370000 perm   2552 sec   (929 perm/sec)   p_kst 8.312236e-05   p_cons 8.460819e-01   p_joint 8.312236e-05

Joint ci ratio: 2.771742e-01	ci left: 7.239967e-05	ci right 9.607198e-05	k: 199	n:2380000
Cons ci ratio: 1.083849e-03	ci left: 8.456035e-01	ci right 8.465209e-01	k: 2013629	n:2380000
KS ci ratio: 2.771742e-01	ci left: 7.239967e-05	ci right 9.607198e-05	k: 199	n:2380000
PYGL   2380000 perm   2571 sec   (926 perm/sec)   p_kst 8.361345e-05   p_cons 8.460626e-01   p_joint 8.361345e-05

Joint ci ratio: 2.764838e-01	ci left: 7.248612e-05	ci right 9.611739e-05	k: 200	n:2390000
Cons ci ratio: 1.081514e-03	ci left: 8.456201e-01	ci right 8.465355e-01	k: 2022127	n:2390000
KS ci ratio: 2.764838e-01	ci left: 7.248612e-05	ci right 9.611739e-05	k: 200	n:2390000
PYGL   2390000 perm   2591 sec   (923 perm/sec)   p_kst 8.368201e-05   p_cons 8.460782e-01   p_joint 8.368201e-05

Joint ci ratio: 2.764838e-01	ci left: 7.218409e-05	ci right 9.571690e-05	k: 200	n:2400000
Cons ci ratio: 1.079325e-03	ci left: 8.456049e-01	ci right 8.465185e-01	k: 2030549	n:2400000
KS ci ratio: 2.764838e-01	ci left: 7.218409e-05	ci right 9.571690e-05	k: 200	n:2400000
PYGL   2400000 perm   2610 sec   (919 perm/sec)   p_kst 8.333333e-05   p_cons 8.460621e-01   p_joint 8.333333e-05

Joint ci ratio: 2.757986e-01	ci left: 7.227078e-05	ci right 9.576333e-05	k: 201	n:2410000
Cons ci ratio: 1.077124e-03	ci left: 8.455960e-01	ci right 8.465077e-01	k: 2038986	n:2410000
KS ci ratio: 2.757986e-01	ci left: 7.227078e-05	ci right 9.576333e-05	k: 201	n:2410000
PYGL   2410000 perm   2630 sec   (916 perm/sec)   p_kst 8.340249e-05   p_cons 8.460523e-01   p_joint 8.340249e-05

Joint ci ratio: 2.744433e-01	ci left: 7.274158e-05	ci right 9.625092e-05	k: 203	n:2420000
Cons ci ratio: 1.074991e-03	ci left: 8.455740e-01	ci right 8.464839e-01	k: 2047391	n:2420000
KS ci ratio: 2.744433e-01	ci left: 7.274158e-05	ci right 9.625092e-05	k: 203	n:2420000
PYGL   2420000 perm   2650 sec   (913 perm/sec)   p_kst 8.388430e-05   p_cons 8.460293e-01   p_joint 8.388430e-05

Joint ci ratio: 2.731077e-01	ci left: 7.320879e-05	ci right 9.673423e-05	k: 205	n:2430000
Cons ci ratio: 1.072830e-03	ci left: 8.455620e-01	ci right 8.464701e-01	k: 2055820	n:2430000
KS ci ratio: 2.731077e-01	ci left: 7.320879e-05	ci right 9.673423e-05	k: 205	n:2430000
PYGL   2430000 perm   2669 sec   (910 perm/sec)   p_kst 8.436214e-05   p_cons 8.460165e-01   p_joint 8.436214e-05

Joint ci ratio: 2.731078e-01	ci left: 7.290875e-05	ci right 9.633778e-05	k: 205	n:2440000
Cons ci ratio: 1.070631e-03	ci left: 8.455625e-01	ci right 8.464687e-01	k: 2064279	n:2440000
KS ci ratio: 2.731078e-01	ci left: 7.290875e-05	ci right 9.633778e-05	k: 205	n:2440000
PYGL   2440000 perm   2689 sec   (907 perm/sec)   p_kst 8.401639e-05   p_cons 8.460160e-01   p_joint 8.401639e-05

Joint ci ratio: 2.731078e-01	ci left: 7.261116e-05	ci right 9.594457e-05	k: 205	n:2450000
Cons ci ratio: 1.068382e-03	ci left: 8.455785e-01	ci right 8.464827e-01	k: 2072776	n:2450000
KS ci ratio: 2.731078e-01	ci left: 7.261116e-05	ci right 9.594457e-05	k: 205	n:2450000
PYGL   2450000 perm   2709 sec   (904 perm/sec)   p_kst 8.367347e-05   p_cons 8.460310e-01   p_joint 8.367347e-05

Joint ci ratio: 2.717915e-01	ci left: 7.307348e-05	ci right 9.642295e-05	k: 207	n:2460000
Cons ci ratio: 1.066262e-03	ci left: 8.455662e-01	ci right 8.464687e-01	k: 2081204	n:2460000
KS ci ratio: 2.717915e-01	ci left: 7.307348e-05	ci right 9.642295e-05	k: 207	n:2460000
PYGL   2460000 perm   2729 sec   (901 perm/sec)   p_kst 8.414634e-05   p_cons 8.460179e-01   p_joint 8.414634e-05

Joint ci ratio: 2.711405e-01	ci left: 7.315494e-05	ci right 9.646492e-05	k: 208	n:2470000
Cons ci ratio: 1.064074e-03	ci left: 8.455740e-01	ci right 8.464746e-01	k: 2089681	n:2470000
KS ci ratio: 2.711405e-01	ci left: 7.315494e-05	ci right 9.646492e-05	k: 208	n:2470000
PYGL   2470000 perm   2749 sec   (898 perm/sec)   p_kst 8.421053e-05   p_cons 8.460247e-01   p_joint 8.421053e-05

Joint ci ratio: 2.698524e-01	ci left: 7.361173e-05	ci right 9.693696e-05	k: 210	n:2480000
Cons ci ratio: 1.062065e-03	ci left: 8.455409e-01	ci right 8.464398e-01	k: 2098057	n:2480000
KS ci ratio: 2.698524e-01	ci left: 7.361173e-05	ci right 9.693696e-05	k: 210	n:2480000
PYGL   2480000 perm   2769 sec   (896 perm/sec)   p_kst 8.467742e-05   p_cons 8.459907e-01   p_joint 8.467742e-05

Joint ci ratio: 2.685824e-01	ci left: 7.406510e-05	ci right 9.740494e-05	k: 212	n:2490000
Cons ci ratio: 1.059919e-03	ci left: 8.455446e-01	ci right 8.464417e-01	k: 2106524	n:2490000
KS ci ratio: 2.685824e-01	ci left: 7.406510e-05	ci right 9.740494e-05	k: 212	n:2490000
PYGL   2490000 perm   2790 sec   (893 perm/sec)   p_kst 8.514056e-05   p_cons 8.459936e-01   p_joint 8.514056e-05

Joint ci ratio: 2.679542e-01	ci left: 7.414194e-05	ci right 9.744216e-05	k: 213	n:2500000
Cons ci ratio: 1.057853e-03	ci left: 8.455315e-01	ci right 8.464269e-01	k: 2114949	n:2500000
KS ci ratio: 2.679542e-01	ci left: 7.414194e-05	ci right 9.744216e-05	k: 213	n:2500000
PYGL   2500000 perm   2811 sec   (889 perm/sec)   p_kst 8.520000e-05   p_cons 8.459796e-01   p_joint 8.520000e-05

Joint ci ratio: 2.673303e-01	ci left: 7.421823e-05	ci right 9.747902e-05	k: 214	n:2510000
Cons ci ratio: 1.055752e-03	ci left: 8.455305e-01	ci right 8.464241e-01	k: 2123404	n:2510000
KS ci ratio: 2.673303e-01	ci left: 7.421823e-05	ci right 9.747902e-05	k: 214	n:2510000
PYGL   2510000 perm   2831 sec   (887 perm/sec)   p_kst 8.525896e-05   p_cons 8.459777e-01   p_joint 8.525896e-05

Joint ci ratio: 2.667107e-01	ci left: 7.429398e-05	ci right 9.751552e-05	k: 215	n:2520000
Cons ci ratio: 1.053537e-03	ci left: 8.455605e-01	ci right 8.464522e-01	k: 2131937	n:2520000
KS ci ratio: 2.667107e-01	ci left: 7.429398e-05	ci right 9.751552e-05	k: 215	n:2520000
PYGL   2520000 perm   2852 sec   (884 perm/sec)   p_kst 8.531746e-05   p_cons 8.460067e-01   p_joint 8.531746e-05

Joint ci ratio: 2.660955e-01	ci left: 7.436919e-05	ci right 9.755168e-05	k: 216	n:2530000
Cons ci ratio: 1.051404e-03	ci left: 8.455736e-01	ci right 8.464635e-01	k: 2140428	n:2530000
KS ci ratio: 2.660955e-01	ci left: 7.436919e-05	ci right 9.755168e-05	k: 216	n:2530000
PYGL   2530000 perm   2872 sec   (881 perm/sec)   p_kst 8.537549e-05   p_cons 8.460190e-01   p_joint 8.537549e-05

Joint ci ratio: 2.654845e-01	ci left: 7.444387e-05	ci right 9.758749e-05	k: 217	n:2540000
Cons ci ratio: 1.049363e-03	ci left: 8.455669e-01	ci right 8.464551e-01	k: 2148869	n:2540000
KS ci ratio: 2.654845e-01	ci left: 7.444387e-05	ci right 9.758749e-05	k: 217	n:2540000
PYGL   2540000 perm   2893 sec   (878 perm/sec)   p_kst 8.543307e-05   p_cons 8.460114e-01   p_joint 8.543307e-05

Joint ci ratio: 2.881936e-01	ci left: 6.210744e-05	ci right 8.336916e-05	k: 184	n:2550000
Cons ci ratio: 1.047390e-03	ci left: 8.455462e-01	ci right 8.464326e-01	k: 2157274	n:2550000
KS ci ratio: 2.881936e-01	ci left: 6.210744e-05	ci right 8.336916e-05	k: 184	n:2550000
PYGL   2550000 perm   2913 sec   (875 perm/sec)   p_kst 7.215686e-05   p_cons 8.459898e-01   p_joint 7.215686e-05

Joint ci ratio: 2.881937e-01	ci left: 6.186483e-05	ci right 8.304350e-05	k: 184	n:2560000
Cons ci ratio: 1.045364e-03	ci left: 8.455416e-01	ci right 8.464264e-01	k: 2165720	n:2560000
KS ci ratio: 2.881937e-01	ci left: 6.186483e-05	ci right 8.304350e-05	k: 184	n:2560000
PYGL   2560000 perm   2934 sec   (873 perm/sec)   p_kst 7.187500e-05   p_cons 8.459844e-01   p_joint 7.187500e-05

Joint ci ratio: 2.881937e-01	ci left: 6.162411e-05	ci right 8.272038e-05	k: 184	n:2570000
Cons ci ratio: 1.043351e-03	ci left: 8.455367e-01	ci right 8.464197e-01	k: 2174165	n:2570000
KS ci ratio: 2.881937e-01	ci left: 6.162411e-05	ci right 8.272038e-05	k: 184	n:2570000
PYGL   2570000 perm   2955 sec   (870 perm/sec)   p_kst 7.159533e-05   p_cons 8.459786e-01   p_joint 7.159533e-05

Joint ci ratio: 2.881937e-01	ci left: 6.138525e-05	ci right 8.239976e-05	k: 184	n:2580000
Cons ci ratio: 1.041341e-03	ci left: 8.455341e-01	ci right 8.464155e-01	k: 2182616	n:2580000
KS ci ratio: 2.881937e-01	ci left: 6.138525e-05	ci right 8.239976e-05	k: 184	n:2580000
PYGL   2580000 perm   2976 sec   (867 perm/sec)   p_kst 7.131783e-05   p_cons 8.459752e-01   p_joint 7.131783e-05

Joint ci ratio: 2.881938e-01	ci left: 6.114824e-05	ci right 8.208161e-05	k: 184	n:2590000
Cons ci ratio: 1.039262e-03	ci left: 8.455517e-01	ci right 8.464313e-01	k: 2191119	n:2590000
KS ci ratio: 2.881938e-01	ci left: 6.114824e-05	ci right 8.208161e-05	k: 184	n:2590000
PYGL   2590000 perm   2997 sec   (864 perm/sec)   p_kst 7.104247e-05   p_cons 8.459919e-01   p_joint 7.104247e-05

Joint ci ratio: 2.874180e-01	ci left: 6.126991e-05	ci right 8.217821e-05	k: 185	n:2600000
Cons ci ratio: 1.037219e-03	ci left: 8.455634e-01	ci right 8.464412e-01	k: 2199607	n:2600000
KS ci ratio: 2.874180e-01	ci left: 6.126991e-05	ci right 8.217821e-05	k: 185	n:2600000
PYGL   2600000 perm   3018 sec   (862 perm/sec)   p_kst 7.115385e-05   p_cons 8.460027e-01   p_joint 7.115385e-05

Joint ci ratio: 2.874180e-01	ci left: 6.103516e-05	ci right 8.186336e-05	k: 185	n:2610000
Cons ci ratio: 1.035243e-03	ci left: 8.455608e-01	ci right 8.464369e-01	k: 2208058	n:2610000
KS ci ratio: 2.874180e-01	ci left: 6.103516e-05	ci right 8.186336e-05	k: 185	n:2610000
PYGL   2610000 perm   3039 sec   (859 perm/sec)   p_kst 7.088123e-05   p_cons 8.459992e-01   p_joint 7.088123e-05

Joint ci ratio: 2.874181e-01	ci left: 6.080220e-05	ci right 8.155090e-05	k: 185	n:2620000
Cons ci ratio: 1.033204e-03	ci left: 8.455773e-01	ci right 8.464517e-01	k: 2216559	n:2620000
KS ci ratio: 2.874181e-01	ci left: 6.080220e-05	ci right 8.155090e-05	k: 185	n:2620000
PYGL   2620000 perm   3060 sec   (856 perm/sec)   p_kst 7.061069e-05   p_cons 8.460149e-01   p_joint 7.061069e-05

Joint ci ratio: 2.874181e-01	ci left: 6.057101e-05	ci right 8.124083e-05	k: 185	n:2630000
Cons ci ratio: 1.031214e-03	ci left: 8.455841e-01	ci right 8.464569e-01	k: 2225035	n:2630000
KS ci ratio: 2.874181e-01	ci left: 6.057101e-05	ci right 8.124083e-05	k: 185	n:2630000
PYGL   2630000 perm   3082 sec   (853 perm/sec)   p_kst 7.034221e-05   p_cons 8.460209e-01   p_joint 7.034221e-05

Joint ci ratio: 2.874182e-01	ci left: 6.034158e-05	ci right 8.093310e-05	k: 185	n:2640000
Cons ci ratio: 1.029226e-03	ci left: 8.455932e-01	ci right 8.464643e-01	k: 2233517	n:2640000
KS ci ratio: 2.874182e-01	ci left: 6.034158e-05	ci right 8.093310e-05	k: 185	n:2640000
PYGL   2640000 perm   3103 sec   (851 perm/sec)   p_kst 7.007576e-05   p_cons 8.460292e-01   p_joint 7.007576e-05

Joint ci ratio: 2.874182e-01	ci left: 6.011387e-05	ci right 8.062769e-05	k: 185	n:2650000
Cons ci ratio: 1.027403e-03	ci left: 8.455633e-01	ci right 8.464329e-01	k: 2241896	n:2650000
KS ci ratio: 2.874182e-01	ci left: 6.011387e-05	ci right 8.062769e-05	k: 185	n:2650000
PYGL   2650000 perm   3124 sec   (848 perm/sec)   p_kst 6.981132e-05   p_cons 8.459985e-01   p_joint 6.981132e-05

Joint ci ratio: 2.874182e-01	ci left: 5.988788e-05	ci right 8.032458e-05	k: 185	n:2660000
Cons ci ratio: 1.025460e-03	ci left: 8.455668e-01	ci right 8.464347e-01	k: 2250363	n:2660000
KS ci ratio: 2.874182e-01	ci left: 5.988788e-05	ci right 8.032458e-05	k: 185	n:2660000
PYGL   2660000 perm   3146 sec   (846 perm/sec)   p_kst 6.954887e-05   p_cons 8.460011e-01   p_joint 6.954887e-05

Joint ci ratio: 2.874183e-01	ci left: 5.966358e-05	ci right 8.002374e-05	k: 185	n:2670000
Cons ci ratio: 1.023519e-03	ci left: 8.455725e-01	ci right 8.464387e-01	k: 2258836	n:2670000
KS ci ratio: 2.874183e-01	ci left: 5.966358e-05	ci right 8.002374e-05	k: 185	n:2670000
PYGL   2670000 perm   3168 sec   (843 perm/sec)   p_kst 6.928839e-05   p_cons 8.460060e-01   p_joint 6.928839e-05

Joint ci ratio: 2.866487e-01	ci left: 5.978723e-05	ci right 8.012507e-05	k: 186	n:2680000
Cons ci ratio: 1.021733e-03	ci left: 8.455411e-01	ci right 8.464059e-01	k: 2267210	n:2680000
KS ci ratio: 2.866487e-01	ci left: 5.978723e-05	ci right 8.012507e-05	k: 186	n:2680000
PYGL   2680000 perm   3190 sec   (840 perm/sec)   p_kst 6.940299e-05   p_cons 8.459739e-01   p_joint 6.940299e-05

Joint ci ratio: 2.858853e-01	ci left: 5.991003e-05	ci right 8.022557e-05	k: 187	n:2690000
Cons ci ratio: 1.019898e-03	ci left: 8.455253e-01	ci right 8.463884e-01	k: 2275625	n:2690000
KS ci ratio: 2.858853e-01	ci left: 5.991003e-05	ci right 8.022557e-05	k: 187	n:2690000
PYGL   2690000 perm   3211 sec   (838 perm/sec)   p_kst 6.951673e-05   p_cons 8.459572e-01   p_joint 6.951673e-05

Joint ci ratio: 2.843766e-01	ci left: 6.037592e-05	ci right 8.072200e-05	k: 189	n:2700000
Cons ci ratio: 1.018119e-03	ci left: 8.454973e-01	ci right 8.463590e-01	k: 2284007	n:2700000
KS ci ratio: 2.843766e-01	ci left: 6.037592e-05	ci right 8.072200e-05	k: 189	n:2700000
PYGL   2700000 perm   3233 sec   (835 perm/sec)   p_kst 7.000000e-05   p_cons 8.459285e-01   p_joint 7.000000e-05

Joint ci ratio: 2.821577e-01	ci left: 6.118152e-05	ci right 8.160957e-05	k: 192	n:2710000
Cons ci ratio: 1.016270e-03	ci left: 8.454903e-01	ci right 8.463503e-01	k: 2292445	n:2710000
KS ci ratio: 2.821577e-01	ci left: 6.118152e-05	ci right 8.160957e-05	k: 192	n:2710000
PYGL   2710000 perm   3255 sec   (833 perm/sec)   p_kst 7.084871e-05   p_cons 8.459207e-01   p_joint 7.084871e-05

Joint ci ratio: 2.821577e-01	ci left: 6.095658e-05	ci right 8.130954e-05	k: 192	n:2720000
Cons ci ratio: 1.014433e-03	ci left: 8.454825e-01	ci right 8.463410e-01	k: 2300881	n:2720000
KS ci ratio: 2.821577e-01	ci left: 6.095658e-05	ci right 8.130954e-05	k: 192	n:2720000
PYGL   2720000 perm   3277 sec   (830 perm/sec)   p_kst 7.058824e-05   p_cons 8.459121e-01   p_joint 7.058824e-05

Joint ci ratio: 2.821577e-01	ci left: 6.073330e-05	ci right 8.101170e-05	k: 192	n:2730000
Cons ci ratio: 1.012599e-03	ci left: 8.454767e-01	ci right 8.463336e-01	k: 2309322	n:2730000
KS ci ratio: 2.821577e-01	ci left: 6.073330e-05	ci right 8.101170e-05	k: 192	n:2730000
PYGL   2730000 perm   3298 sec   (828 perm/sec)   p_kst 7.032967e-05   p_cons 8.459055e-01   p_joint 7.032967e-05

Joint ci ratio: 2.821578e-01	ci left: 6.051164e-05	ci right 8.071604e-05	k: 192	n:2740000
Cons ci ratio: 1.010726e-03	ci left: 8.454836e-01	ci right 8.463390e-01	k: 2317798	n:2740000
KS ci ratio: 2.821578e-01	ci left: 6.051164e-05	ci right 8.071604e-05	k: 192	n:2740000
PYGL   2740000 perm   3320 sec   (825 perm/sec)   p_kst 7.007299e-05   p_cons 8.459117e-01   p_joint 7.007299e-05

Joint ci ratio: 2.821578e-01	ci left: 6.029160e-05	ci right 8.042253e-05	k: 192	n:2750000
Cons ci ratio: 1.008889e-03	ci left: 8.454837e-01	ci right 8.463374e-01	k: 2326255	n:2750000
KS ci ratio: 2.821578e-01	ci left: 6.029160e-05	ci right 8.042253e-05	k: 192	n:2750000
PYGL   2750000 perm   3342 sec   (823 perm/sec)   p_kst 6.981818e-05   p_cons 8.459109e-01   p_joint 6.981818e-05

Joint ci ratio: 2.814297e-01	ci left: 6.040987e-05	ci right 8.051900e-05	k: 193	n:2760000
Cons ci ratio: 1.007120e-03	ci left: 8.454688e-01	ci right 8.463211e-01	k: 2334671	n:2760000
KS ci ratio: 2.814297e-01	ci left: 6.040987e-05	ci right 8.051900e-05	k: 193	n:2760000
PYGL   2760000 perm   3364 sec   (820 perm/sec)   p_kst 6.992754e-05   p_cons 8.458953e-01   p_joint 6.992754e-05

Joint ci ratio: 2.814297e-01	ci left: 6.019178e-05	ci right 8.022832e-05	k: 193	n:2770000
Cons ci ratio: 1.005440e-03	ci left: 8.454334e-01	ci right 8.462842e-01	k: 2343030	n:2770000
KS ci ratio: 2.814297e-01	ci left: 6.019178e-05	ci right 8.022832e-05	k: 193	n:2770000
PYGL   2770000 perm   3386 sec   (818 perm/sec)   p_kst 6.967509e-05   p_cons 8.458592e-01   p_joint 6.967509e-05

Joint ci ratio: 2.807071e-01	ci left: 6.030963e-05	ci right 8.032472e-05	k: 194	n:2780000
Cons ci ratio: 1.003582e-03	ci left: 8.454466e-01	ci right 8.462958e-01	k: 2351523	n:2780000
KS ci ratio: 2.807071e-01	ci left: 6.030963e-05	ci right 8.032472e-05	k: 194	n:2780000
PYGL   2780000 perm   3409 sec   (816 perm/sec)   p_kst 6.978417e-05   p_cons 8.458716e-01   p_joint 6.978417e-05

Joint ci ratio: 2.799901e-01	ci left: 6.042669e-05	ci right 8.042038e-05	k: 195	n:2790000
Cons ci ratio: 1.001820e-03	ci left: 8.454374e-01	ci right 8.462852e-01	k: 2359954	n:2790000
KS ci ratio: 2.799901e-01	ci left: 6.042669e-05	ci right 8.042038e-05	k: 195	n:2790000
PYGL   2790000 perm   3431 sec   (813 perm/sec)   p_kst 6.989247e-05   p_cons 8.458616e-01   p_joint 6.989247e-05

Joint ci ratio: 2.792786e-01	ci left: 6.054298e-05	ci right 8.051528e-05	k: 196	n:2800000
Cons ci ratio: 1.000118e-03	ci left: 8.454151e-01	ci right 8.462614e-01	k: 2368348	n:2800000
KS ci ratio: 2.792786e-01	ci left: 6.054298e-05	ci right 8.051528e-05	k: 196	n:2800000
PYGL   2800000 perm   3454 sec   (811 perm/sec)   p_kst 7.000000e-05   p_cons 8.458386e-01   p_joint 7.000000e-05

Joint ci ratio: 2.792786e-01	ci left: 6.032753e-05	ci right 8.022875e-05	k: 196	n:2810000
Cons ci ratio: 9.983526e-04	ci left: 8.454118e-01	ci right 8.462566e-01	k: 2376795	n:2810000
KS ci ratio: 2.792786e-01	ci left: 6.032753e-05	ci right 8.022875e-05	k: 196	n:2810000
PYGL   2810000 perm   3476 sec   (808 perm/sec)   p_kst 6.975089e-05   p_cons 8.458345e-01   p_joint 6.975089e-05

Joint ci ratio: 2.792786e-01	ci left: 6.011360e-05	ci right 7.994425e-05	k: 196	n:2820000
Cons ci ratio: 9.966532e-04	ci left: 8.453936e-01	ci right 8.462369e-01	k: 2385200	n:2820000
KS ci ratio: 2.792786e-01	ci left: 6.011360e-05	ci right 7.994425e-05	k: 196	n:2820000
PYGL   2820000 perm   3499 sec   (806 perm/sec)   p_kst 6.950355e-05   p_cons 8.458156e-01   p_joint 6.950355e-05

Joint ci ratio: 2.778716e-01	ci left: 6.055854e-05	ci right 8.041772e-05	k: 198	n:2830000
Cons ci ratio: 9.948505e-04	ci left: 8.454049e-01	ci right 8.462467e-01	k: 2393688	n:2830000
KS ci ratio: 2.778716e-01	ci left: 6.055854e-05	ci right 8.041772e-05	k: 198	n:2830000
PYGL   2830000 perm   3522 sec   (803 perm/sec)   p_kst 6.996466e-05   p_cons 8.458261e-01   p_joint 6.996466e-05

Joint ci ratio: 2.778716e-01	ci left: 6.034530e-05	ci right 8.013456e-05	k: 198	n:2840000
Cons ci ratio: 9.931314e-04	ci left: 8.453967e-01	ci right 8.462371e-01	k: 2402121	n:2840000
KS ci ratio: 2.778716e-01	ci left: 6.034530e-05	ci right 8.013456e-05	k: 198	n:2840000
PYGL   2840000 perm   3545 sec   (801 perm/sec)   p_kst 6.971831e-05   p_cons 8.458173e-01   p_joint 6.971831e-05

Joint ci ratio: 2.771761e-01	ci left: 6.046002e-05	ci right 8.022861e-05	k: 199	n:2850000
Cons ci ratio: 9.914224e-04	ci left: 8.453883e-01	ci right 8.462272e-01	k: 2410553	n:2850000
KS ci ratio: 2.771761e-01	ci left: 6.046002e-05	ci right 8.022861e-05	k: 199	n:2850000
PYGL   2850000 perm   3568 sec   (799 perm/sec)   p_kst 6.982456e-05   p_cons 8.458081e-01   p_joint 6.982456e-05

Joint ci ratio: 2.771761e-01	ci left: 6.024862e-05	ci right 7.994810e-05	k: 199	n:2860000
Cons ci ratio: 9.897196e-04	ci left: 8.453806e-01	ci right 8.462180e-01	k: 2418987	n:2860000
KS ci ratio: 2.771761e-01	ci left: 6.024862e-05	ci right 7.994810e-05	k: 199	n:2860000
PYGL   2860000 perm   3591 sec   (796 perm/sec)   p_kst 6.958042e-05   p_cons 8.457997e-01   p_joint 6.958042e-05

Joint ci ratio: 2.764858e-01	ci left: 6.036295e-05	ci right 8.004209e-05	k: 200	n:2870000
Cons ci ratio: 9.880505e-04	ci left: 8.453663e-01	ci right 8.462023e-01	k: 2427402	n:2870000
KS ci ratio: 2.764858e-01	ci left: 6.036295e-05	ci right 8.004209e-05	k: 200	n:2870000
PYGL   2870000 perm   3614 sec   (794 perm/sec)   p_kst 6.968641e-05   p_cons 8.457847e-01   p_joint 6.968641e-05

Joint ci ratio: 2.751203e-01	ci left: 6.079978e-05	ci right 8.050651e-05	k: 202	n:2880000
Cons ci ratio: 9.863781e-04	ci left: 8.453553e-01	ci right 8.461899e-01	k: 2435826	n:2880000
KS ci ratio: 2.751203e-01	ci left: 6.079978e-05	ci right 8.050651e-05	k: 202	n:2880000
PYGL   2880000 perm   3638 sec   (792 perm/sec)   p_kst 7.013889e-05   p_cons 8.457729e-01   p_joint 7.013889e-05

Joint ci ratio: 2.731096e-01	ci left: 6.155613e-05	ci right 8.133716e-05	k: 205	n:2890000
Cons ci ratio: 9.846619e-04	ci left: 8.453582e-01	ci right 8.461913e-01	k: 2444290	n:2890000
KS ci ratio: 2.731096e-01	ci left: 6.155613e-05	ci right 8.133716e-05	k: 205	n:2890000
PYGL   2890000 perm   3661 sec   (789 perm/sec)   p_kst 7.093426e-05   p_cons 8.457751e-01   p_joint 7.093426e-05

Joint ci ratio: 2.731096e-01	ci left: 6.134386e-05	ci right 8.105669e-05	k: 205	n:2900000
Cons ci ratio: 9.829287e-04	ci left: 8.453680e-01	ci right 8.461996e-01	k: 2452774	n:2900000
KS ci ratio: 2.731096e-01	ci left: 6.134386e-05	ci right 8.105669e-05	k: 205	n:2900000
PYGL   2900000 perm   3685 sec   (787 perm/sec)   p_kst 7.068966e-05   p_cons 8.457841e-01   p_joint 7.068966e-05

Joint ci ratio: 2.711423e-01	ci left: 6.209366e-05	ci right 8.187924e-05	k: 208	n:2910000
Cons ci ratio: 9.812769e-04	ci left: 8.453584e-01	ci right 8.461887e-01	k: 2461202	n:2910000
KS ci ratio: 2.711423e-01	ci left: 6.209366e-05	ci right 8.187924e-05	k: 208	n:2910000
PYGL   2910000 perm   3708 sec   (785 perm/sec)   p_kst 7.147766e-05   p_cons 8.457739e-01   p_joint 7.147766e-05

Joint ci ratio: 2.698541e-01	ci left: 6.251950e-05	ci right 8.233009e-05	k: 210	n:2920000
Cons ci ratio: 9.796128e-04	ci left: 8.453544e-01	ci right 8.461833e-01	k: 2469646	n:2920000
KS ci ratio: 2.698541e-01	ci left: 6.251950e-05	ci right 8.233009e-05	k: 210	n:2920000
PYGL   2920000 perm   3732 sec   (782 perm/sec)   p_kst 7.191781e-05   p_cons 8.457692e-01   p_joint 7.191781e-05

Joint ci ratio: 2.685842e-01	ci left: 6.294265e-05	ci right 8.277766e-05	k: 212	n:2930000
Cons ci ratio: 9.779176e-04	ci left: 8.453610e-01	ci right 8.461885e-01	k: 2478121	n:2930000
KS ci ratio: 2.685842e-01	ci left: 6.294265e-05	ci right 8.277766e-05	k: 212	n:2930000
PYGL   2930000 perm   3756 sec   (780 perm/sec)   p_kst 7.235495e-05   p_cons 8.457751e-01   p_joint 7.235495e-05

Joint ci ratio: 2.673320e-01	ci left: 6.336314e-05	ci right 8.322196e-05	k: 214	n:2940000
Cons ci ratio: 9.762693e-04	ci left: 8.453574e-01	ci right 8.461834e-01	k: 2486566	n:2940000
KS ci ratio: 2.673320e-01	ci left: 6.336314e-05	ci right 8.322196e-05	k: 214	n:2940000
PYGL   2940000 perm   3780 sec   (778 perm/sec)   p_kst 7.278912e-05   p_cons 8.457707e-01   p_joint 7.278912e-05

Joint ci ratio: 2.654860e-01	ci left: 6.409739e-05	ci right 8.402455e-05	k: 217	n:2950000
Cons ci ratio: 9.746432e-04	ci left: 8.453501e-01	ci right 8.461747e-01	k: 2495000	n:2950000
KS ci ratio: 2.654860e-01	ci left: 6.409739e-05	ci right 8.402455e-05	k: 217	n:2950000
PYGL   2950000 perm   3805 sec   (775 perm/sec)   p_kst 7.355932e-05   p_cons 8.457627e-01   p_joint 7.355932e-05

Joint ci ratio: 2.654861e-01	ci left: 6.388084e-05	ci right 8.374069e-05	k: 217	n:2960000
Cons ci ratio: 9.730630e-04	ci left: 8.453326e-01	ci right 8.461559e-01	k: 2503404	n:2960000
KS ci ratio: 2.654861e-01	ci left: 6.388084e-05	ci right 8.374069e-05	k: 217	n:2960000
PYGL   2960000 perm   3828 sec   (773 perm/sec)   p_kst 7.331081e-05   p_cons 8.457446e-01   p_joint 7.331081e-05

Joint ci ratio: 2.654861e-01	ci left: 6.366575e-05	ci right 8.345873e-05	k: 217	n:2970000
Cons ci ratio: 9.714015e-04	ci left: 8.453392e-01	ci right 8.461611e-01	k: 2511879	n:2970000
KS ci ratio: 2.654861e-01	ci left: 6.366575e-05	ci right 8.345873e-05	k: 217	n:2970000
PYGL   2970000 perm   3852 sec   (771 perm/sec)   p_kst 7.306397e-05   p_cons 8.457505e-01   p_joint 7.306397e-05

Joint ci ratio: 2.654861e-01	ci left: 6.345211e-05	ci right 8.317867e-05	k: 217	n:2980000
Cons ci ratio: 9.698083e-04	ci left: 8.453297e-01	ci right 8.461502e-01	k: 2520306	n:2980000
KS ci ratio: 2.654861e-01	ci left: 6.345211e-05	ci right 8.317867e-05	k: 217	n:2980000
PYGL   2980000 perm   3876 sec   (769 perm/sec)   p_kst 7.281879e-05   p_cons 8.457403e-01   p_joint 7.281879e-05

Joint ci ratio: 2.648793e-01	ci left: 6.355211e-05	ci right 8.325711e-05	k: 218	n:2990000
Cons ci ratio: 9.681348e-04	ci left: 8.453439e-01	ci right 8.461631e-01	k: 2528804	n:2990000
KS ci ratio: 2.648793e-01	ci left: 6.355211e-05	ci right 8.325711e-05	k: 218	n:2990000
PYGL   2990000 perm   3900 sec   (767 perm/sec)   p_kst 7.290970e-05   p_cons 8.457538e-01   p_joint 7.290970e-05

Joint ci ratio: 2.642766e-01	ci left: 6.365150e-05	ci right 8.333498e-05	k: 219	n:3000000
Cons ci ratio: 9.665526e-04	ci left: 8.453358e-01	ci right 8.461536e-01	k: 2537235	n:3000000
KS ci ratio: 2.642766e-01	ci left: 6.365150e-05	ci right 8.333498e-05	k: 219	n:3000000
PYGL   3000000 perm   3924 sec   (764 perm/sec)   p_kst 7.300000e-05   p_cons 8.457450e-01   p_joint 7.300000e-05

Joint ci ratio: 2.636780e-01	ci left: 6.375027e-05	ci right 8.341228e-05	k: 220	n:3010000
Cons ci ratio: 9.649254e-04	ci left: 8.453420e-01	ci right 8.461584e-01	k: 2545709	n:3010000
KS ci ratio: 2.636780e-01	ci left: 6.375027e-05	ci right 8.341228e-05	k: 220	n:3010000
PYGL   3010000 perm   3948 sec   (762 perm/sec)   p_kst 7.308970e-05   p_cons 8.457505e-01   p_joint 7.308970e-05

Joint ci ratio: 2.630835e-01	ci left: 6.384845e-05	ci right 8.348901e-05	k: 221	n:3020000
Cons ci ratio: 9.633149e-04	ci left: 8.453458e-01	ci right 8.461608e-01	k: 2554176	n:3020000
KS ci ratio: 2.630835e-01	ci left: 6.384845e-05	ci right 8.348901e-05	k: 221	n:3020000
PYGL   3020000 perm   3972 sec   (760 perm/sec)   p_kst 7.317881e-05   p_cons 8.457536e-01   p_joint 7.317881e-05

Joint ci ratio: 2.630835e-01	ci left: 6.363772e-05	ci right 8.321347e-05	k: 221	n:3030000
Cons ci ratio: 9.617246e-04	ci left: 8.453463e-01	ci right 8.461600e-01	k: 2562633	n:3030000
KS ci ratio: 2.630835e-01	ci left: 6.363772e-05	ci right 8.321347e-05	k: 221	n:3030000
PYGL   3030000 perm   3996 sec   (758 perm/sec)   p_kst 7.293729e-05   p_cons 8.457535e-01   p_joint 7.293729e-05

Joint ci ratio: 2.630835e-01	ci left: 6.342839e-05	ci right 8.293975e-05	k: 221	n:3040000
Cons ci ratio: 9.601615e-04	ci left: 8.453415e-01	ci right 8.461539e-01	k: 2571074	n:3040000
KS ci ratio: 2.630835e-01	ci left: 6.342839e-05	ci right 8.293975e-05	k: 221	n:3040000
PYGL   3040000 perm   4020 sec   (756 perm/sec)   p_kst 7.269737e-05   p_cons 8.457480e-01   p_joint 7.269737e-05

Joint ci ratio: 2.630836e-01	ci left: 6.322043e-05	ci right 8.266781e-05	k: 221	n:3050000
Cons ci ratio: 9.586530e-04	ci left: 8.453240e-01	ci right 8.461350e-01	k: 2579476	n:3050000
KS ci ratio: 2.630836e-01	ci left: 6.322043e-05	ci right 8.266781e-05	k: 221	n:3050000
PYGL   3050000 perm   4044 sec   (754 perm/sec)   p_kst 7.245902e-05   p_cons 8.457298e-01   p_joint 7.245902e-05

Joint ci ratio: 2.619064e-01	ci left: 6.362442e-05	ci right 8.309416e-05	k: 223	n:3060000
Cons ci ratio: 9.570725e-04	ci left: 8.453281e-01	ci right 8.461379e-01	k: 2587944	n:3060000
KS ci ratio: 2.619064e-01	ci left: 6.362442e-05	ci right 8.309416e-05	k: 223	n:3060000
PYGL   3060000 perm   4069 sec   (752 perm/sec)   p_kst 7.287582e-05   p_cons 8.457333e-01   p_joint 7.287582e-05

Joint ci ratio: 2.613237e-01	ci left: 6.372155e-05	ci right 8.317054e-05	k: 224	n:3070000
Cons ci ratio: 9.555952e-04	ci left: 8.453062e-01	ci right 8.461147e-01	k: 2596332	n:3070000
KS ci ratio: 2.613237e-01	ci left: 6.372155e-05	ci right 8.317054e-05	k: 224	n:3070000
PYGL   3070000 perm   4093 sec   (750 perm/sec)   p_kst 7.296417e-05   p_cons 8.457107e-01   p_joint 7.296417e-05

Joint ci ratio: 2.607449e-01	ci left: 6.381809e-05	ci right 8.324637e-05	k: 225	n:3080000
Cons ci ratio: 9.540962e-04	ci left: 8.452922e-01	ci right 8.460994e-01	k: 2604744	n:3080000
KS ci ratio: 2.607449e-01	ci left: 6.381809e-05	ci right 8.324637e-05	k: 225	n:3080000
PYGL   3080000 perm   4117 sec   (748 perm/sec)   p_kst 7.305195e-05   p_cons 8.456961e-01   p_joint 7.305195e-05

Joint ci ratio: 2.601699e-01	ci left: 6.391406e-05	ci right 8.332167e-05	k: 226	n:3090000
Cons ci ratio: 9.525120e-04	ci left: 8.453035e-01	ci right 8.461094e-01	k: 2613234	n:3090000
KS ci ratio: 2.601699e-01	ci left: 6.391406e-05	ci right 8.332167e-05	k: 226	n:3090000
PYGL   3090000 perm   4142 sec   (746 perm/sec)   p_kst 7.313916e-05   p_cons 8.457068e-01   p_joint 7.313916e-05

Joint ci ratio: 2.590313e-01	ci left: 6.431107e-05	ci right 8.373994e-05	k: 228	n:3100000
Cons ci ratio: 9.509428e-04	ci left: 8.453129e-01	ci right 8.461174e-01	k: 2621718	n:3100000
KS ci ratio: 2.590313e-01	ci left: 6.431107e-05	ci right 8.373994e-05	k: 228	n:3100000
PYGL   3100000 perm   4166 sec   (744 perm/sec)   p_kst 7.354839e-05   p_cons 8.457155e-01   p_joint 7.354839e-05

Joint ci ratio: 2.584675e-01	ci left: 6.440497e-05	ci right 8.381303e-05	k: 229	n:3110000
Cons ci ratio: 9.494469e-04	ci left: 8.453042e-01	ci right 8.461074e-01	k: 2630146	n:3110000
KS ci ratio: 2.584675e-01	ci left: 6.440497e-05	ci right 8.381303e-05	k: 229	n:3110000
PYGL   3110000 perm   4192 sec   (742 perm/sec)   p_kst 7.363344e-05   p_cons 8.457061e-01   p_joint 7.363344e-05

Joint ci ratio: 2.579075e-01	ci left: 6.449832e-05	ci right 8.388561e-05	k: 230	n:3120000
Cons ci ratio: 9.478974e-04	ci left: 8.453122e-01	ci right 8.461141e-01	k: 2638626	n:3120000
KS ci ratio: 2.579075e-01	ci left: 6.449832e-05	ci right 8.388561e-05	k: 230	n:3120000
PYGL   3120000 perm   4217 sec   (740 perm/sec)   p_kst 7.371795e-05   p_cons 8.457135e-01   p_joint 7.371795e-05

Joint ci ratio: 2.579075e-01	ci left: 6.429225e-05	ci right 8.361760e-05	k: 230	n:3130000
Cons ci ratio: 9.463752e-04	ci left: 8.453147e-01	ci right 8.461153e-01	k: 2647089	n:3130000
KS ci ratio: 2.579075e-01	ci left: 6.429225e-05	ci right 8.361760e-05	k: 230	n:3130000
PYGL   3130000 perm   4242 sec   (738 perm/sec)   p_kst 7.348243e-05   p_cons 8.457153e-01   p_joint 7.348243e-05

Joint ci ratio: 2.573511e-01	ci left: 6.438541e-05	ci right 8.369030e-05	k: 231	n:3140000
Cons ci ratio: 9.448718e-04	ci left: 8.453140e-01	ci right 8.461134e-01	k: 2655542	n:3140000
KS ci ratio: 2.573511e-01	ci left: 6.438541e-05	ci right 8.369030e-05	k: 231	n:3140000
PYGL   3140000 perm   4267 sec   (736 perm/sec)   p_kst 7.356688e-05   p_cons 8.457140e-01   p_joint 7.356688e-05

Joint ci ratio: 2.567982e-01	ci left: 6.447802e-05	ci right 8.376248e-05	k: 232	n:3150000
Cons ci ratio: 9.433824e-04	ci left: 8.453114e-01	ci right 8.461095e-01	k: 2663989	n:3150000
KS ci ratio: 2.567982e-01	ci left: 6.447802e-05	ci right 8.376248e-05	k: 232	n:3150000
PYGL   3150000 perm   4292 sec   (734 perm/sec)   p_kst 7.365079e-05   p_cons 8.457108e-01   p_joint 7.365079e-05

Joint ci ratio: 2.562489e-01	ci left: 6.457008e-05	ci right 8.383417e-05	k: 233	n:3160000
Cons ci ratio: 9.418773e-04	ci left: 8.453152e-01	ci right 8.461120e-01	k: 2672456	n:3160000
KS ci ratio: 2.562489e-01	ci left: 6.457008e-05	ci right 8.383417e-05	k: 233	n:3160000
PYGL   3160000 perm   4318 sec   (732 perm/sec)   p_kst 7.373418e-05   p_cons 8.457139e-01   p_joint 7.373418e-05

Joint ci ratio: 2.551607e-01	ci left: 6.495688e-05	ci right 8.424097e-05	k: 235	n:3170000
Cons ci ratio: 9.403770e-04	ci left: 8.453196e-01	ci right 8.461151e-01	k: 2680925	n:3170000
KS ci ratio: 2.551607e-01	ci left: 6.495688e-05	ci right 8.424097e-05	k: 235	n:3170000
PYGL   3170000 perm   4343 sec   (730 perm/sec)   p_kst 7.413249e-05   p_cons 8.457177e-01   p_joint 7.413249e-05

Joint ci ratio: 2.551608e-01	ci left: 6.475261e-05	ci right 8.397606e-05	k: 235	n:3180000
Cons ci ratio: 9.388341e-04	ci left: 8.453378e-01	ci right 8.461321e-01	k: 2689438	n:3180000
KS ci ratio: 2.551608e-01	ci left: 6.475261e-05	ci right 8.397606e-05	k: 235	n:3180000
PYGL   3180000 perm   4369 sec   (728 perm/sec)   p_kst 7.389937e-05   p_cons 8.457352e-01   p_joint 7.389937e-05

Joint ci ratio: 2.546219e-01	ci left: 6.484308e-05	ci right 8.404627e-05	k: 236	n:3190000
Cons ci ratio: 9.373077e-04	ci left: 8.453533e-01	ci right 8.461464e-01	k: 2697943	n:3190000
KS ci ratio: 2.546219e-01	ci left: 6.484308e-05	ci right 8.404627e-05	k: 236	n:3190000
PYGL   3190000 perm   4394 sec   (726 perm/sec)   p_kst 7.398119e-05   p_cons 8.457502e-01   p_joint 7.398119e-05

Joint ci ratio: 2.546219e-01	ci left: 6.464044e-05	ci right 8.378363e-05	k: 236	n:3200000
Cons ci ratio: 9.358101e-04	ci left: 8.453629e-01	ci right 8.461546e-01	k: 2706429	n:3200000
KS ci ratio: 2.546219e-01	ci left: 6.464044e-05	ci right 8.378363e-05	k: 236	n:3200000
PYGL   3200000 perm   4421 sec   (724 perm/sec)   p_kst 7.375000e-05   p_cons 8.457591e-01   p_joint 7.375000e-05

Joint ci ratio: 2.540864e-01	ci left: 6.473074e-05	ci right 8.385397e-05	k: 237	n:3210000
Cons ci ratio: 9.343129e-04	ci left: 8.453742e-01	ci right 8.461647e-01	k: 2714921	n:3210000
KS ci ratio: 2.540864e-01	ci left: 6.473074e-05	ci right 8.385397e-05	k: 237	n:3210000
PYGL   3210000 perm   4447 sec   (722 perm/sec)   p_kst 7.383178e-05   p_cons 8.457698e-01   p_joint 7.383178e-05

Joint ci ratio: 2.540864e-01	ci left: 6.452971e-05	ci right 8.359355e-05	k: 237	n:3220000
Cons ci ratio: 9.328274e-04	ci left: 8.453843e-01	ci right 8.461735e-01	k: 2723409	n:3220000
KS ci ratio: 2.540864e-01	ci left: 6.452971e-05	ci right 8.359355e-05	k: 237	n:3220000
PYGL   3220000 perm   4472 sec   (720 perm/sec)   p_kst 7.360248e-05   p_cons 8.457792e-01   p_joint 7.360248e-05

Joint ci ratio: 2.540865e-01	ci left: 6.432993e-05	ci right 8.333475e-05	k: 237	n:3230000
Cons ci ratio: 9.313820e-04	ci left: 8.453849e-01	ci right 8.461730e-01	k: 2731867	n:3230000
KS ci ratio: 2.540865e-01	ci left: 6.432993e-05	ci right 8.333475e-05	k: 237	n:3230000
PYGL   3230000 perm   4499 sec   (718 perm/sec)   p_kst 7.337461e-05   p_cons 8.457793e-01   p_joint 7.337461e-05

Joint ci ratio: 2.535543e-01	ci left: 6.442039e-05	ci right 8.340578e-05	k: 238	n:3240000
Cons ci ratio: 9.300204e-04	ci left: 8.453640e-01	ci right 8.461508e-01	k: 2740255	n:3240000
KS ci ratio: 2.535543e-01	ci left: 6.442039e-05	ci right 8.340578e-05	k: 238	n:3240000
PYGL   3240000 perm   4525 sec   (716 perm/sec)   p_kst 7.345679e-05   p_cons 8.457577e-01   p_joint 7.345679e-05

Joint ci ratio: 2.530255e-01	ci left: 6.451033e-05	ci right 8.347633e-05	k: 239	n:3250000
Cons ci ratio: 9.285475e-04	ci left: 8.453761e-01	ci right 8.461617e-01	k: 2748750	n:3250000
KS ci ratio: 2.530255e-01	ci left: 6.451033e-05	ci right 8.347633e-05	k: 239	n:3250000
PYGL   3250000 perm   4552 sec   (714 perm/sec)   p_kst 7.353846e-05   p_cons 8.457692e-01   p_joint 7.353846e-05

Joint ci ratio: 2.525000e-01	ci left: 6.459977e-05	ci right 8.354640e-05	k: 240	n:3260000
Cons ci ratio: 9.270587e-04	ci left: 8.453946e-01	ci right 8.461790e-01	k: 2757266	n:3260000
KS ci ratio: 2.525000e-01	ci left: 6.459977e-05	ci right 8.354640e-05	k: 240	n:3260000
PYGL   3260000 perm   4578 sec   (712 perm/sec)   p_kst 7.361963e-05   p_cons 8.457871e-01   p_joint 7.361963e-05

Joint ci ratio: 2.509429e-01	ci left: 6.526178e-05	ci right 8.426609e-05	k: 243	n:3270000
Cons ci ratio: 9.256584e-04	ci left: 8.453901e-01	ci right 8.461732e-01	k: 2765707	n:3270000
KS ci ratio: 2.509429e-01	ci left: 6.526178e-05	ci right 8.426609e-05	k: 243	n:3270000
PYGL   3270000 perm   4604 sec   (710 perm/sec)   p_kst 7.431193e-05   p_cons 8.457820e-01   p_joint 7.431193e-05

Joint ci ratio: 2.509429e-01	ci left: 6.506281e-05	ci right 8.400918e-05	k: 243	n:3280000
Cons ci ratio: 9.242579e-04	ci left: 8.453873e-01	ci right 8.461694e-01	k: 2774154	n:3280000
KS ci ratio: 2.509429e-01	ci left: 6.506281e-05	ci right 8.400918e-05	k: 243	n:3280000
PYGL   3280000 perm   4631 sec   (708 perm/sec)   p_kst 7.408537e-05   p_cons 8.457787e-01   p_joint 7.408537e-05

Joint ci ratio: 2.509429e-01	ci left: 6.486505e-05	ci right 8.375384e-05	k: 243	n:3290000
Cons ci ratio: 9.228412e-04	ci left: 8.453911e-01	ci right 8.461719e-01	k: 2782622	n:3290000
KS ci ratio: 2.509429e-01	ci left: 6.486505e-05	ci right 8.375384e-05	k: 243	n:3290000
PYGL   3290000 perm   4658 sec   (706 perm/sec)   p_kst 7.386018e-05   p_cons 8.457818e-01   p_joint 7.386018e-05

Joint ci ratio: 2.504303e-01	ci left: 6.495248e-05	ci right 8.382207e-05	k: 244	n:3300000
Cons ci ratio: 9.213946e-04	ci left: 8.454050e-01	ci right 8.461846e-01	k: 2791124	n:3300000
KS ci ratio: 2.504303e-01	ci left: 6.495248e-05	ci right 8.382207e-05	k: 244	n:3300000
PYGL   3300000 perm   4684 sec   (705 perm/sec)   p_kst 7.393939e-05   p_cons 8.457952e-01   p_joint 7.393939e-05

Joint ci ratio: 2.504303e-01	ci left: 6.475625e-05	ci right 8.356883e-05	k: 244	n:3310000
Cons ci ratio: 9.199846e-04	ci left: 8.454105e-01	ci right 8.461889e-01	k: 2799598	n:3310000
KS ci ratio: 2.504303e-01	ci left: 6.475625e-05	ci right 8.356883e-05	k: 244	n:3310000
PYGL   3310000 perm   4710 sec   (703 perm/sec)   p_kst 7.371601e-05   p_cons 8.458000e-01   p_joint 7.371601e-05

Joint ci ratio: 2.504303e-01	ci left: 6.456120e-05	ci right 8.331712e-05	k: 244	n:3320000
Cons ci ratio: 9.185779e-04	ci left: 8.454168e-01	ci right 8.461940e-01	k: 2808075	n:3320000
KS ci ratio: 2.504303e-01	ci left: 6.456120e-05	ci right 8.331712e-05	k: 244	n:3320000
PYGL   3320000 perm   4736 sec   (701 perm/sec)   p_kst 7.349398e-05   p_cons 8.458057e-01   p_joint 7.349398e-05

Joint ci ratio: 2.499208e-01	ci left: 6.464880e-05	ci right 8.338600e-05	k: 245	n:3330000
Cons ci ratio: 9.171871e-04	ci left: 8.454204e-01	ci right 8.461964e-01	k: 2816543	n:3330000
KS ci ratio: 2.499208e-01	ci left: 6.464880e-05	ci right 8.338600e-05	k: 245	n:3330000
PYGL   3330000 perm   4763 sec   (699 perm/sec)   p_kst 7.357357e-05   p_cons 8.458087e-01   p_joint 7.357357e-05

Joint ci ratio: 2.499208e-01	ci left: 6.445524e-05	ci right 8.313635e-05	k: 245	n:3340000
Cons ci ratio: 9.158720e-04	ci left: 8.454042e-01	ci right 8.461791e-01	k: 2824945	n:3340000
KS ci ratio: 2.499208e-01	ci left: 6.445524e-05	ci right 8.313635e-05	k: 245	n:3340000
PYGL   3340000 perm   4789 sec   (697 perm/sec)   p_kst 7.335329e-05   p_cons 8.457919e-01   p_joint 7.335329e-05

Joint ci ratio: 2.494144e-01	ci left: 6.454266e-05	ci right 8.320532e-05	k: 246	n:3350000
Cons ci ratio: 9.145186e-04	ci left: 8.454006e-01	ci right 8.461743e-01	k: 2833389	n:3350000
KS ci ratio: 2.494144e-01	ci left: 6.454266e-05	ci right 8.320532e-05	k: 246	n:3350000
PYGL   3350000 perm   4816 sec   (696 perm/sec)   p_kst 7.343284e-05   p_cons 8.457878e-01   p_joint 7.343284e-05

Joint ci ratio: 2.489110e-01	ci left: 6.462961e-05	ci right 8.327385e-05	k: 247	n:3360000
Cons ci ratio: 9.131576e-04	ci left: 8.454009e-01	ci right 8.461735e-01	k: 2841846	n:3360000
KS ci ratio: 2.489110e-01	ci left: 6.462961e-05	ci right 8.327385e-05	k: 247	n:3360000
PYGL   3360000 perm   4842 sec   (694 perm/sec)   p_kst 7.351190e-05   p_cons 8.457875e-01   p_joint 7.351190e-05

Joint ci ratio: 2.489111e-01	ci left: 6.443783e-05	ci right 8.302675e-05	k: 247	n:3370000
Cons ci ratio: 9.118099e-04	ci left: 8.453991e-01	ci right 8.461706e-01	k: 2850296	n:3370000
KS ci ratio: 2.489111e-01	ci left: 6.443783e-05	ci right 8.302675e-05	k: 247	n:3370000
PYGL   3370000 perm   4870 sec   (692 perm/sec)   p_kst 7.329377e-05   p_cons 8.457852e-01   p_joint 7.329377e-05

Joint ci ratio: 2.489111e-01	ci left: 6.424718e-05	ci right 8.278111e-05	k: 247	n:3380000
Cons ci ratio: 9.103969e-04	ci left: 8.454178e-01	ci right 8.461881e-01	k: 2858815	n:3380000
KS ci ratio: 2.489111e-01	ci left: 6.424718e-05	ci right 8.278111e-05	k: 247	n:3380000
PYGL   3380000 perm   4897 sec   (690 perm/sec)   p_kst 7.307692e-05   p_cons 8.458033e-01   p_joint 7.307692e-05

Joint ci ratio: 2.489111e-01	ci left: 6.405766e-05	ci right 8.253692e-05	k: 247	n:3390000
Cons ci ratio: 9.090357e-04	ci left: 8.454234e-01	ci right 8.461925e-01	k: 2867290	n:3390000
KS ci ratio: 2.489111e-01	ci left: 6.405766e-05	ci right 8.253692e-05	k: 247	n:3390000
PYGL   3390000 perm   4925 sec   (688 perm/sec)   p_kst 7.286136e-05   p_cons 8.458083e-01   p_joint 7.286136e-05

Joint ci ratio: 2.489111e-01	ci left: 6.386926e-05	ci right 8.229417e-05	k: 247	n:3400000
Cons ci ratio: 9.076448e-04	ci left: 8.454392e-01	ci right 8.462072e-01	k: 2875800	n:3400000
KS ci ratio: 2.489111e-01	ci left: 6.386926e-05	ci right 8.229417e-05	k: 247	n:3400000
PYGL   3400000 perm   4952 sec   (687 perm/sec)   p_kst 7.264706e-05   p_cons 8.458235e-01   p_joint 7.264706e-05

Joint ci ratio: 2.484108e-01	ci left: 6.395694e-05	ci right 8.236432e-05	k: 248	n:3410000
Cons ci ratio: 9.063570e-04	ci left: 8.454271e-01	ci right 8.461940e-01	k: 2884215	n:3410000
KS ci ratio: 2.484108e-01	ci left: 6.395694e-05	ci right 8.236432e-05	k: 248	n:3410000
PYGL   3410000 perm   4979 sec   (685 perm/sec)   p_kst 7.272727e-05   p_cons 8.458109e-01   p_joint 7.272727e-05

Joint ci ratio: 2.479135e-01	ci left: 6.404415e-05	ci right 8.243404e-05	k: 249	n:3420000
Cons ci ratio: 9.050412e-04	ci left: 8.454247e-01	ci right 8.461905e-01	k: 2892663	n:3420000
KS ci ratio: 2.479135e-01	ci left: 6.404415e-05	ci right 8.243404e-05	k: 249	n:3420000
PYGL   3420000 perm   5006 sec   (683 perm/sec)   p_kst 7.280702e-05   p_cons 8.458079e-01   p_joint 7.280702e-05

Joint ci ratio: 2.479135e-01	ci left: 6.385743e-05	ci right 8.219371e-05	k: 249	n:3430000
Cons ci ratio: 9.037463e-04	ci left: 8.454180e-01	ci right 8.461826e-01	k: 2901096	n:3430000
KS ci ratio: 2.479135e-01	ci left: 6.385743e-05	ci right 8.219371e-05	k: 249	n:3430000
PYGL   3430000 perm   5033 sec   (681 perm/sec)   p_kst 7.259475e-05   p_cons 8.458006e-01   p_joint 7.259475e-05

Joint ci ratio: 2.474191e-01	ci left: 6.394445e-05	ci right 8.226347e-05	k: 250	n:3440000
Cons ci ratio: 9.024489e-04	ci left: 8.454136e-01	ci right 8.461771e-01	k: 2909537	n:3440000
KS ci ratio: 2.474191e-01	ci left: 6.394445e-05	ci right 8.226347e-05	k: 250	n:3440000
PYGL   3440000 perm   5061 sec   (680 perm/sec)   p_kst 7.267442e-05   p_cons 8.457956e-01   p_joint 7.267442e-05

Joint ci ratio: 2.474192e-01	ci left: 6.375911e-05	ci right 8.202503e-05	k: 250	n:3450000
Cons ci ratio: 9.011530e-04	ci left: 8.454104e-01	ci right 8.461728e-01	k: 2917982	n:3450000
KS ci ratio: 2.474192e-01	ci left: 6.375911e-05	ci right 8.202503e-05	k: 250	n:3450000
PYGL   3450000 perm   5088 sec   (678 perm/sec)   p_kst 7.246377e-05   p_cons 8.457919e-01   p_joint 7.246377e-05

Joint ci ratio: 2.474192e-01	ci left: 6.357483e-05	ci right 8.178796e-05	k: 250	n:3460000
Cons ci ratio: 8.998348e-04	ci left: 8.454153e-01	ci right 8.461766e-01	k: 2926455	n:3460000
KS ci ratio: 2.474192e-01	ci left: 6.357483e-05	ci right 8.178796e-05	k: 250	n:3460000
PYGL   3460000 perm   5116 sec   (676 perm/sec)   p_kst 7.225434e-05   p_cons 8.457962e-01   p_joint 7.225434e-05

Joint ci ratio: 2.474192e-01	ci left: 6.339162e-05	ci right 8.155227e-05	k: 250	n:3470000
Cons ci ratio: 8.986057e-04	ci left: 8.453959e-01	ci right 8.461562e-01	k: 2934844	n:3470000
KS ci ratio: 2.474192e-01	ci left: 6.339162e-05	ci right 8.155227e-05	k: 250	n:3470000
PYGL   3470000 perm   5143 sec   (675 perm/sec)   p_kst 7.204611e-05   p_cons 8.457764e-01   p_joint 7.204611e-05

Joint ci ratio: 2.459537e-01	ci left: 6.401824e-05	ci right 8.223317e-05	k: 253	n:3480000
Cons ci ratio: 8.972818e-04	ci left: 8.454058e-01	ci right 8.461649e-01	k: 2943334	n:3480000
KS ci ratio: 2.459537e-01	ci left: 6.401824e-05	ci right 8.223317e-05	k: 253	n:3480000
PYGL   3480000 perm   5171 sec   (673 perm/sec)   p_kst 7.270115e-05   p_cons 8.457856e-01   p_joint 7.270115e-05

Joint ci ratio: 2.454709e-01	ci left: 6.410370e-05	ci right 8.230168e-05	k: 254	n:3490000
Cons ci ratio: 8.959627e-04	ci left: 8.454158e-01	ci right 8.461739e-01	k: 2951825	n:3490000
KS ci ratio: 2.454709e-01	ci left: 6.410370e-05	ci right 8.230168e-05	k: 254	n:3490000
PYGL   3490000 perm   5198 sec   (671 perm/sec)   p_kst 7.277937e-05   p_cons 8.457951e-01   p_joint 7.277937e-05

Joint ci ratio: 2.445139e-01	ci left: 6.445690e-05	ci right 8.267297e-05	k: 256	n:3500000
Cons ci ratio: 8.947250e-04	ci left: 8.454038e-01	ci right 8.461608e-01	k: 2960239	n:3500000
KS ci ratio: 2.445139e-01	ci left: 6.445690e-05	ci right 8.267297e-05	k: 256	n:3500000
PYGL   3500000 perm   5226 sec   (670 perm/sec)   p_kst 7.314286e-05   p_cons 8.457826e-01   p_joint 7.314286e-05

Joint ci ratio: 2.440395e-01	ci left: 6.454072e-05	ci right 8.273974e-05	k: 257	n:3510000
Cons ci ratio: 8.934093e-04	ci left: 8.454161e-01	ci right 8.461720e-01	k: 2968738	n:3510000
KS ci ratio: 2.440395e-01	ci left: 6.454072e-05	ci right 8.273974e-05	k: 257	n:3510000
PYGL   3510000 perm   5254 sec   (668 perm/sec)   p_kst 7.321937e-05   p_cons 8.457943e-01   p_joint 7.321937e-05

Joint ci ratio: 2.440396e-01	ci left: 6.435737e-05	ci right 8.250469e-05	k: 257	n:3520000
Cons ci ratio: 8.921461e-04	ci left: 8.454146e-01	ci right 8.461695e-01	k: 2977189	n:3520000
KS ci ratio: 2.440396e-01	ci left: 6.435737e-05	ci right 8.250469e-05	k: 257	n:3520000
PYGL   3520000 perm   5282 sec   (666 perm/sec)   p_kst 7.301136e-05   p_cons 8.457923e-01   p_joint 7.301136e-05

Joint ci ratio: 2.430991e-01	ci left: 6.470705e-05	ci right 8.287204e-05	k: 259	n:3530000
Cons ci ratio: 8.908950e-04	ci left: 8.454112e-01	ci right 8.461650e-01	k: 2985633	n:3530000
KS ci ratio: 2.430991e-01	ci left: 6.470705e-05	ci right 8.287204e-05	k: 259	n:3530000
PYGL   3530000 perm   5310 sec   (665 perm/sec)   p_kst 7.337110e-05   p_cons 8.457884e-01   p_joint 7.337110e-05

Joint ci ratio: 2.426329e-01	ci left: 6.478956e-05	ci right 8.293758e-05	k: 260	n:3540000
Cons ci ratio: 8.896232e-04	ci left: 8.454155e-01	ci right 8.461682e-01	k: 2994104	n:3540000
KS ci ratio: 2.426329e-01	ci left: 6.478956e-05	ci right 8.293758e-05	k: 260	n:3540000
PYGL   3540000 perm   5338 sec   (663 perm/sec)   p_kst 7.344633e-05   p_cons 8.457921e-01   p_joint 7.344633e-05

Joint ci ratio: 2.412503e-01	ci left: 6.540090e-05	ci right 8.360016e-05	k: 263	n:3550000
Cons ci ratio: 8.883510e-04	ci left: 8.454214e-01	ci right 8.461730e-01	k: 3002581	n:3550000
KS ci ratio: 2.412503e-01	ci left: 6.540090e-05	ci right 8.360016e-05	k: 263	n:3550000
PYGL   3550000 perm   5367 sec   (661 perm/sec)   p_kst 7.408451e-05   p_cons 8.457975e-01   p_joint 7.408451e-05

Joint ci ratio: 2.403416e-01	ci left: 6.574509e-05	ci right 8.396095e-05	k: 265	n:3560000
Cons ci ratio: 8.871301e-04	ci left: 8.454137e-01	ci right 8.461643e-01	k: 3011010	n:3560000
KS ci ratio: 2.403416e-01	ci left: 6.574509e-05	ci right 8.396095e-05	k: 265	n:3560000
PYGL   3560000 perm   5395 sec   (660 perm/sec)   p_kst 7.443820e-05   p_cons 8.457893e-01   p_joint 7.443820e-05

Joint ci ratio: 2.398911e-01	ci left: 6.582419e-05	ci right 8.402270e-05	k: 266	n:3570000
Cons ci ratio: 8.858848e-04	ci left: 8.454149e-01	ci right 8.461644e-01	k: 3019470	n:3570000
KS ci ratio: 2.398911e-01	ci left: 6.582419e-05	ci right 8.402270e-05	k: 266	n:3570000
PYGL   3570000 perm   5424 sec   (658 perm/sec)   p_kst 7.450980e-05   p_cons 8.457899e-01   p_joint 7.450980e-05

Joint ci ratio: 2.394431e-01	ci left: 6.590289e-05	ci right 8.408407e-05	k: 267	n:3580000
Cons ci ratio: 8.846295e-04	ci left: 8.454205e-01	ci right 8.461689e-01	k: 3027946	n:3580000
KS ci ratio: 2.394431e-01	ci left: 6.590289e-05	ci right 8.408407e-05	k: 267	n:3580000
PYGL   3580000 perm   5453 sec   (656 perm/sec)   p_kst 7.458101e-05   p_cons 8.457950e-01   p_joint 7.458101e-05

Joint ci ratio: 2.394431e-01	ci left: 6.571931e-05	ci right 8.384985e-05	k: 267	n:3590000
Cons ci ratio: 8.833824e-04	ci left: 8.454252e-01	ci right 8.461726e-01	k: 3036419	n:3590000
KS ci ratio: 2.394431e-01	ci left: 6.571931e-05	ci right 8.384985e-05	k: 267	n:3590000
PYGL   3590000 perm   5483 sec   (655 perm/sec)   p_kst 7.437326e-05   p_cons 8.457992e-01   p_joint 7.437326e-05

Joint ci ratio: 2.389977e-01	ci left: 6.579789e-05	ci right 8.391133e-05	k: 268	n:3600000
Cons ci ratio: 8.821611e-04	ci left: 8.454237e-01	ci right 8.461701e-01	k: 3044870	n:3600000
KS ci ratio: 2.389977e-01	ci left: 6.579789e-05	ci right 8.391133e-05	k: 268	n:3600000
PYGL   3600000 perm   5512 sec   (653 perm/sec)   p_kst 7.444444e-05   p_cons 8.457972e-01   p_joint 7.444444e-05

Joint ci ratio: 2.381141e-01	ci left: 6.613653e-05	ci right 8.426596e-05	k: 270	n:3610000
Cons ci ratio: 8.809543e-04	ci left: 8.454196e-01	ci right 8.461649e-01	k: 3053311	n:3610000
KS ci ratio: 2.381141e-01	ci left: 6.613653e-05	ci right 8.426596e-05	k: 270	n:3610000
PYGL   3610000 perm   5541 sec   (651 perm/sec)   p_kst 7.479224e-05   p_cons 8.457925e-01   p_joint 7.479224e-05

Joint ci ratio: 2.381141e-01	ci left: 6.595383e-05	ci right 8.403318e-05	k: 270	n:3620000
Cons ci ratio: 8.797422e-04	ci left: 8.454184e-01	ci right 8.461628e-01	k: 3061763	n:3620000
KS ci ratio: 2.381141e-01	ci left: 6.595383e-05	ci right 8.403318e-05	k: 270	n:3620000
PYGL   3620000 perm   5570 sec   (650 perm/sec)   p_kst 7.458564e-05   p_cons 8.457909e-01   p_joint 7.458564e-05

Joint ci ratio: 2.376760e-01	ci left: 6.603120e-05	ci right 8.409355e-05	k: 271	n:3630000
Cons ci ratio: 8.784999e-04	ci left: 8.454278e-01	ci right 8.461711e-01	k: 3070253	n:3630000
KS ci ratio: 2.376760e-01	ci left: 6.603120e-05	ci right 8.409355e-05	k: 271	n:3630000
PYGL   3630000 perm   5599 sec   (648 perm/sec)   p_kst 7.465565e-05   p_cons 8.457997e-01   p_joint 7.465565e-05

Joint ci ratio: 2.376760e-01	ci left: 6.584980e-05	ci right 8.386253e-05	k: 271	n:3640000
Cons ci ratio: 8.773034e-04	ci left: 8.454250e-01	ci right 8.461673e-01	k: 3078699	n:3640000
KS ci ratio: 2.376760e-01	ci left: 6.584980e-05	ci right 8.386253e-05	k: 271	n:3640000
PYGL   3640000 perm   5628 sec   (647 perm/sec)   p_kst 7.445055e-05   p_cons 8.457964e-01   p_joint 7.445055e-05

Joint ci ratio: 2.376760e-01	ci left: 6.566939e-05	ci right 8.363277e-05	k: 271	n:3650000
Cons ci ratio: 8.761385e-04	ci left: 8.454143e-01	ci right 8.461556e-01	k: 3087116	n:3650000
KS ci ratio: 2.376760e-01	ci left: 6.566939e-05	ci right 8.363277e-05	k: 271	n:3650000
PYGL   3650000 perm   5657 sec   (645 perm/sec)   p_kst 7.424658e-05   p_cons 8.457852e-01   p_joint 7.424658e-05

Joint ci ratio: 2.372403e-01	ci left: 6.574693e-05	ci right 8.369371e-05	k: 272	n:3660000
Cons ci ratio: 8.749140e-04	ci left: 8.454228e-01	ci right 8.461630e-01	k: 3095603	n:3660000
KS ci ratio: 2.372403e-01	ci left: 6.574693e-05	ci right 8.369371e-05	k: 272	n:3660000
PYGL   3660000 perm   5686 sec   (644 perm/sec)   p_kst 7.431694e-05   p_cons 8.457932e-01   p_joint 7.431694e-05

Joint ci ratio: 2.368070e-01	ci left: 6.582408e-05	ci right 8.375429e-05	k: 273	n:3670000
Cons ci ratio: 8.737038e-04	ci left: 8.454285e-01	ci right 8.461677e-01	k: 3104080	n:3670000
KS ci ratio: 2.368070e-01	ci left: 6.582408e-05	ci right 8.375429e-05	k: 273	n:3670000
PYGL   3670000 perm   5716 sec   (642 perm/sec)   p_kst 7.438692e-05   p_cons 8.457984e-01   p_joint 7.438692e-05

Joint ci ratio: 2.359474e-01	ci left: 6.615651e-05	ci right 8.410230e-05	k: 275	n:3680000
Cons ci ratio: 8.725005e-04	ci left: 8.454336e-01	ci right 8.461718e-01	k: 3112555	n:3680000
KS ci ratio: 2.359474e-01	ci left: 6.615651e-05	ci right 8.410230e-05	k: 275	n:3680000
PYGL   3680000 perm   5745 sec   (641 perm/sec)   p_kst 7.472826e-05   p_cons 8.458030e-01   p_joint 7.472826e-05

Joint ci ratio: 2.359474e-01	ci left: 6.597722e-05	ci right 8.387439e-05	k: 275	n:3690000
Cons ci ratio: 8.712649e-04	ci left: 8.454498e-01	ci right 8.461870e-01	k: 3121071	n:3690000
KS ci ratio: 2.359474e-01	ci left: 6.597722e-05	ci right 8.387439e-05	k: 275	n:3690000
PYGL   3690000 perm   5774 sec   (639 perm/sec)   p_kst 7.452575e-05   p_cons 8.458187e-01   p_joint 7.452575e-05

Joint ci ratio: 2.359474e-01	ci left: 6.579890e-05	ci right 8.364770e-05	k: 275	n:3700000
Cons ci ratio: 8.701419e-04	ci left: 8.454338e-01	ci right 8.461700e-01	k: 3129468	n:3700000
KS ci ratio: 2.359474e-01	ci left: 6.579890e-05	ci right 8.364770e-05	k: 275	n:3700000
PYGL   3700000 perm   5803 sec   (638 perm/sec)   p_kst 7.432432e-05   p_cons 8.458022e-01   p_joint 7.432432e-05

Joint ci ratio: 2.359475e-01	ci left: 6.562155e-05	ci right 8.342223e-05	k: 275	n:3710000
Cons ci ratio: 8.689936e-04	ci left: 8.454267e-01	ci right 8.461620e-01	k: 3137898	n:3710000
KS ci ratio: 2.359475e-01	ci left: 6.562155e-05	ci right 8.342223e-05	k: 275	n:3710000
PYGL   3710000 perm   5832 sec   (636 perm/sec)   p_kst 7.412399e-05   p_cons 8.457946e-01   p_joint 7.412399e-05

Joint ci ratio: 2.355212e-01	ci left: 6.569809e-05	ci right 8.348265e-05	k: 276	n:3720000
Cons ci ratio: 8.678605e-04	ci left: 8.454165e-01	ci right 8.461507e-01	k: 3146316	n:3720000
KS ci ratio: 2.355212e-01	ci left: 6.569809e-05	ci right 8.348265e-05	k: 276	n:3720000
PYGL   3720000 perm   5862 sec   (635 perm/sec)   p_kst 7.419355e-05   p_cons 8.457839e-01   p_joint 7.419355e-05

Joint ci ratio: 2.355212e-01	ci left: 6.552195e-05	ci right 8.325883e-05	k: 276	n:3730000
Cons ci ratio: 8.666535e-04	ci left: 8.454299e-01	ci right 8.461631e-01	k: 3154822	n:3730000
KS ci ratio: 2.355212e-01	ci left: 6.552195e-05	ci right 8.325883e-05	k: 276	n:3730000
PYGL   3730000 perm   5891 sec   (633 perm/sec)   p_kst 7.399464e-05   p_cons 8.457968e-01   p_joint 7.399464e-05

Joint ci ratio: 2.355212e-01	ci left: 6.534676e-05	ci right 8.303622e-05	k: 276	n:3740000
Cons ci ratio: 8.654603e-04	ci left: 8.454406e-01	ci right 8.461728e-01	k: 3163318	n:3740000
KS ci ratio: 2.355212e-01	ci left: 6.534676e-05	ci right 8.303622e-05	k: 276	n:3740000
PYGL   3740000 perm   5921 sec   (632 perm/sec)   p_kst 7.379679e-05   p_cons 8.458070e-01   p_joint 7.379679e-05

Joint ci ratio: 2.355212e-01	ci left: 6.517250e-05	ci right 8.281479e-05	k: 276	n:3750000
Cons ci ratio: 8.642871e-04	ci left: 8.454466e-01	ci right 8.461779e-01	k: 3171797	n:3750000
KS ci ratio: 2.355212e-01	ci left: 6.517250e-05	ci right 8.281479e-05	k: 276	n:3750000
PYGL   3750000 perm   5951 sec   (630 perm/sec)   p_kst 7.360000e-05   p_cons 8.458125e-01   p_joint 7.360000e-05

Joint ci ratio: 2.355213e-01	ci left: 6.499917e-05	ci right 8.259454e-05	k: 276	n:3760000
Cons ci ratio: 8.631328e-04	ci left: 8.454484e-01	ci right 8.461787e-01	k: 3180260	n:3760000
KS ci ratio: 2.355213e-01	ci left: 6.499917e-05	ci right 8.259454e-05	k: 276	n:3760000
PYGL   3760000 perm   5981 sec   (629 perm/sec)   p_kst 7.340426e-05   p_cons 8.458138e-01   p_joint 7.340426e-05

Joint ci ratio: 2.355213e-01	ci left: 6.482676e-05	ci right 8.237545e-05	k: 276	n:3770000
Cons ci ratio: 8.620049e-04	ci left: 8.454436e-01	ci right 8.461729e-01	k: 3188698	n:3770000
KS ci ratio: 2.355213e-01	ci left: 6.482676e-05	ci right 8.237545e-05	k: 276	n:3770000
PYGL   3770000 perm   6011 sec   (627 perm/sec)   p_kst 7.320955e-05   p_cons 8.458085e-01   p_joint 7.320955e-05

Joint ci ratio: 2.355213e-01	ci left: 6.465526e-05	ci right 8.215753e-05	k: 276	n:3780000
Cons ci ratio: 8.608780e-04	ci left: 8.454398e-01	ci right 8.461682e-01	k: 3197140	n:3780000
KS ci ratio: 2.355213e-01	ci left: 6.465526e-05	ci right 8.215753e-05	k: 276	n:3780000
PYGL   3780000 perm   6041 sec   (626 perm/sec)   p_kst 7.301587e-05   p_cons 8.458042e-01   p_joint 7.301587e-05

Joint ci ratio: 2.342561e-01	ci left: 6.522964e-05	ci right 8.277881e-05	k: 279	n:3790000
Cons ci ratio: 8.597772e-04	ci left: 8.454294e-01	ci right 8.461569e-01	k: 3205557	n:3790000
KS ci ratio: 2.342561e-01	ci left: 6.522964e-05	ci right 8.277881e-05	k: 279	n:3790000
PYGL   3790000 perm   6071 sec   (624 perm/sec)   p_kst 7.361478e-05   p_cons 8.457934e-01   p_joint 7.361478e-05

Joint ci ratio: 2.334239e-01	ci left: 6.555347e-05	ci right 8.311806e-05	k: 281	n:3800000
Cons ci ratio: 8.586148e-04	ci left: 8.454391e-01	ci right 8.461656e-01	k: 3214050	n:3800000
KS ci ratio: 2.334239e-01	ci left: 6.555347e-05	ci right 8.311806e-05	k: 281	n:3800000
PYGL   3800000 perm   6101 sec   (623 perm/sec)   p_kst 7.394737e-05   p_cons 8.458026e-01   p_joint 7.394737e-05

Joint ci ratio: 2.330111e-01	ci left: 6.562855e-05	ci right 8.317768e-05	k: 282	n:3810000
Cons ci ratio: 8.574640e-04	ci left: 8.454467e-01	ci right 8.461722e-01	k: 3222535	n:3810000
KS ci ratio: 2.330111e-01	ci left: 6.562855e-05	ci right 8.317768e-05	k: 282	n:3810000
PYGL   3810000 perm   6131 sec   (621 perm/sec)   p_kst 7.401575e-05   p_cons 8.458097e-01   p_joint 7.401575e-05

Joint ci ratio: 2.330112e-01	ci left: 6.545674e-05	ci right 8.295993e-05	k: 282	n:3820000
Cons ci ratio: 8.562628e-04	ci left: 8.454710e-01	ci right 8.461955e-01	k: 3231084	n:3820000
KS ci ratio: 2.330112e-01	ci left: 6.545674e-05	ci right 8.295993e-05	k: 282	n:3820000
PYGL   3820000 perm   6161 sec   (620 perm/sec)   p_kst 7.382199e-05   p_cons 8.458335e-01   p_joint 7.382199e-05

Joint ci ratio: 2.326006e-01	ci left: 6.553171e-05	ci right 8.301963e-05	k: 283	n:3830000
Cons ci ratio: 8.551839e-04	ci left: 8.454594e-01	ci right 8.461829e-01	k: 3239496	n:3830000
KS ci ratio: 2.326006e-01	ci left: 6.553171e-05	ci right 8.301963e-05	k: 283	n:3830000
PYGL   3830000 perm   6191 sec   (619 perm/sec)   p_kst 7.389034e-05   p_cons 8.458214e-01   p_joint 7.389034e-05

Joint ci ratio: 2.326006e-01	ci left: 6.536105e-05	ci right 8.280343e-05	k: 283	n:3840000
Cons ci ratio: 8.541150e-04	ci left: 8.454460e-01	ci right 8.461686e-01	k: 3247901	n:3840000
KS ci ratio: 2.326006e-01	ci left: 6.536105e-05	ci right 8.280343e-05	k: 283	n:3840000
PYGL   3840000 perm   6222 sec   (617 perm/sec)   p_kst 7.369792e-05   p_cons 8.458076e-01   p_joint 7.369792e-05

Joint ci ratio: 2.321921e-01	ci left: 6.543590e-05	ci right 8.286319e-05	k: 284	n:3850000
Cons ci ratio: 8.529873e-04	ci left: 8.454519e-01	ci right 8.461736e-01	k: 3256380	n:3850000
KS ci ratio: 2.321921e-01	ci left: 6.543590e-05	ci right 8.286319e-05	k: 284	n:3850000
PYGL   3850000 perm   6254 sec   (616 perm/sec)   p_kst 7.376623e-05   p_cons 8.458130e-01   p_joint 7.376623e-05

Joint ci ratio: 2.317858e-01	ci left: 6.551039e-05	ci right 8.292262e-05	k: 285	n:3860000
Cons ci ratio: 8.519182e-04	ci left: 8.454412e-01	ci right 8.461620e-01	k: 3264795	n:3860000
KS ci ratio: 2.317858e-01	ci left: 6.551039e-05	ci right 8.292262e-05	k: 285	n:3860000
PYGL   3860000 perm   6285 sec   (614 perm/sec)   p_kst 7.383420e-05   p_cons 8.458018e-01   p_joint 7.383420e-05

Joint ci ratio: 2.313817e-01	ci left: 6.558452e-05	ci right 8.298171e-05	k: 286	n:3870000
Cons ci ratio: 8.507940e-04	ci left: 8.454486e-01	ci right 8.461685e-01	k: 3273280	n:3870000
KS ci ratio: 2.313817e-01	ci left: 6.558452e-05	ci right 8.298171e-05	k: 286	n:3870000
PYGL   3870000 perm   6316 sec   (613 perm/sec)   p_kst 7.390181e-05   p_cons 8.458088e-01   p_joint 7.390181e-05

Joint ci ratio: 2.313817e-01	ci left: 6.541549e-05	ci right 8.276784e-05	k: 286	n:3880000
Cons ci ratio: 8.497533e-04	ci left: 8.454318e-01	ci right 8.461507e-01	k: 3281671	n:3880000
KS ci ratio: 2.313817e-01	ci left: 6.541549e-05	ci right 8.276784e-05	k: 286	n:3880000
PYGL   3880000 perm   6347 sec   (611 perm/sec)   p_kst 7.371134e-05   p_cons 8.457915e-01   p_joint 7.371134e-05

Joint ci ratio: 2.305796e-01	ci left: 6.573172e-05	ci right 8.309890e-05	k: 288	n:3890000
Cons ci ratio: 8.485808e-04	ci left: 8.454567e-01	ci right 8.461747e-01	k: 3290224	n:3890000
KS ci ratio: 2.305796e-01	ci left: 6.573172e-05	ci right 8.309890e-05	k: 288	n:3890000
PYGL   3890000 perm   6377 sec   (610 perm/sec)   p_kst 7.403599e-05   p_cons 8.458159e-01   p_joint 7.403599e-05

Joint ci ratio: 2.301817e-01	ci left: 6.580479e-05	ci right 8.315701e-05	k: 289	n:3900000
Cons ci ratio: 8.474682e-04	ci left: 8.454646e-01	ci right 8.461816e-01	k: 3298711	n:3900000
KS ci ratio: 2.301817e-01	ci left: 6.580479e-05	ci right 8.315701e-05	k: 289	n:3900000
PYGL   3900000 perm   6408 sec   (609 perm/sec)   p_kst 7.410256e-05   p_cons 8.458233e-01   p_joint 7.410256e-05

Joint ci ratio: 2.297859e-01	ci left: 6.587751e-05	ci right 8.321480e-05	k: 290	n:3910000
Cons ci ratio: 8.463964e-04	ci left: 8.454611e-01	ci right 8.461773e-01	k: 3307154	n:3910000
KS ci ratio: 2.297859e-01	ci left: 6.587751e-05	ci right 8.321480e-05	k: 290	n:3910000
PYGL   3910000 perm   6439 sec   (607 perm/sec)   p_kst 7.416880e-05   p_cons 8.458194e-01   p_joint 7.416880e-05

Joint ci ratio: 2.297859e-01	ci left: 6.570945e-05	ci right 8.300251e-05	k: 290	n:3920000
Cons ci ratio: 8.453353e-04	ci left: 8.454556e-01	ci right 8.461709e-01	k: 3315589	n:3920000
KS ci ratio: 2.297859e-01	ci left: 6.570945e-05	ci right 8.300251e-05	k: 290	n:3920000
PYGL   3920000 perm   6470 sec   (606 perm/sec)   p_kst 7.397959e-05   p_cons 8.458135e-01   p_joint 7.397959e-05

Joint ci ratio: 2.293921e-01	ci left: 6.578207e-05	ci right 8.306037e-05	k: 291	n:3930000
Cons ci ratio: 8.442436e-04	ci left: 8.454609e-01	ci right 8.461752e-01	k: 3324066	n:3930000
KS ci ratio: 2.293921e-01	ci left: 6.578207e-05	ci right 8.306037e-05	k: 291	n:3930000
PYGL   3930000 perm   6502 sec   (604 perm/sec)   p_kst 7.404580e-05   p_cons 8.458183e-01   p_joint 7.404580e-05

Joint ci ratio: 2.293921e-01	ci left: 6.561511e-05	ci right 8.284956e-05	k: 291	n:3940000
Cons ci ratio: 8.431659e-04	ci left: 8.454631e-01	ci right 8.461765e-01	k: 3332531	n:3940000
KS ci ratio: 2.293921e-01	ci left: 6.561511e-05	ci right 8.284956e-05	k: 291	n:3940000
PYGL   3940000 perm   6533 sec   (603 perm/sec)   p_kst 7.385787e-05   p_cons 8.458201e-01   p_joint 7.385787e-05

Joint ci ratio: 2.290003e-01	ci left: 6.568763e-05	ci right 8.290749e-05	k: 292	n:3950000
Cons ci ratio: 8.421063e-04	ci left: 8.454610e-01	ci right 8.461735e-01	k: 3340979	n:3950000
KS ci ratio: 2.290003e-01	ci left: 6.568763e-05	ci right 8.290749e-05	k: 292	n:3950000
PYGL   3950000 perm   6565 sec   (602 perm/sec)   p_kst 7.392405e-05   p_cons 8.458175e-01   p_joint 7.392405e-05

Joint ci ratio: 2.290003e-01	ci left: 6.552175e-05	ci right 8.269813e-05	k: 292	n:3960000
Cons ci ratio: 8.410498e-04	ci left: 8.454591e-01	ci right 8.461707e-01	k: 3349428	n:3960000
KS ci ratio: 2.290003e-01	ci left: 6.552175e-05	ci right 8.269813e-05	k: 292	n:3960000
PYGL   3960000 perm   6596 sec   (600 perm/sec)   p_kst 7.373737e-05   p_cons 8.458152e-01   p_joint 7.373737e-05

Joint ci ratio: 2.290004e-01	ci left: 6.535671e-05	ci right 8.248982e-05	k: 292	n:3970000
Cons ci ratio: 8.399154e-04	ci left: 8.454827e-01	ci right 8.461934e-01	k: 3357978	n:3970000
KS ci ratio: 2.290004e-01	ci left: 6.535671e-05	ci right 8.248982e-05	k: 292	n:3970000
PYGL   3970000 perm   6628 sec   (599 perm/sec)   p_kst 7.355164e-05   p_cons 8.458383e-01   p_joint 7.355164e-05

Joint ci ratio: 2.286106e-01	ci left: 6.542935e-05	ci right 8.254819e-05	k: 293	n:3980000
Cons ci ratio: 8.388970e-04	ci left: 8.454715e-01	ci right 8.461813e-01	k: 3366390	n:3980000
KS ci ratio: 2.286106e-01	ci left: 6.542935e-05	ci right 8.254819e-05	k: 293	n:3980000
PYGL   3980000 perm   6660 sec   (598 perm/sec)   p_kst 7.361809e-05   p_cons 8.458266e-01   p_joint 7.361809e-05

Joint ci ratio: 2.286106e-01	ci left: 6.526537e-05	ci right 8.234131e-05	k: 293	n:3990000
Cons ci ratio: 8.378622e-04	ci left: 8.454666e-01	ci right 8.461755e-01	k: 3374827	n:3990000
KS ci ratio: 2.286106e-01	ci left: 6.526537e-05	ci right 8.234131e-05	k: 293	n:3990000
PYGL   3990000 perm   6691 sec   (596 perm/sec)   p_kst 7.343358e-05   p_cons 8.458213e-01   p_joint 7.343358e-05

Joint ci ratio: 2.282228e-01	ci left: 6.533790e-05	ci right 8.239973e-05	k: 294	n:4000000
Cons ci ratio: 8.368144e-04	ci left: 8.454670e-01	ci right 8.461750e-01	k: 3383285	n:4000000
KS ci ratio: 2.282228e-01	ci left: 6.533790e-05	ci right 8.239973e-05	k: 294	n:4000000
PYGL   4000000 perm   6723 sec   (595 perm/sec)   p_kst 7.350000e-05   p_cons 8.458212e-01   p_joint 7.350000e-05

Joint ci ratio: 2.274530e-01	ci left: 6.564525e-05	ci right 8.272142e-05	k: 296	n:4010000
Cons ci ratio: 8.357737e-04	ci left: 8.454664e-01	ci right 8.461735e-01	k: 3391739	n:4010000
KS ci ratio: 2.274530e-01	ci left: 6.564525e-05	ci right 8.272142e-05	k: 296	n:4010000
PYGL   4010000 perm   6755 sec   (594 perm/sec)   p_kst 7.381546e-05   p_cons 8.458202e-01   p_joint 7.381546e-05

Joint ci ratio: 2.274530e-01	ci left: 6.548195e-05	ci right 8.251564e-05	k: 296	n:4020000
Cons ci ratio: 8.347130e-04	ci left: 8.454732e-01	ci right 8.461795e-01	k: 3400223	n:4020000
KS ci ratio: 2.274530e-01	ci left: 6.548195e-05	ci right 8.251564e-05	k: 296	n:4020000
PYGL   4020000 perm   6786 sec   (592 perm/sec)   p_kst 7.363184e-05   p_cons 8.458266e-01   p_joint 7.363184e-05

Joint ci ratio: 2.263129e-01	ci left: 6.602158e-05	ci right 8.309754e-05	k: 299	n:4030000
Cons ci ratio: 8.336968e-04	ci left: 8.454674e-01	ci right 8.461728e-01	k: 3408656	n:4030000
KS ci ratio: 2.263129e-01	ci left: 6.602158e-05	ci right 8.309754e-05	k: 299	n:4030000
PYGL   4030000 perm   6818 sec   (591 perm/sec)   p_kst 7.419355e-05   p_cons 8.458203e-01   p_joint 7.419355e-05

Joint ci ratio: 2.263129e-01	ci left: 6.585816e-05	ci right 8.289185e-05	k: 299	n:4040000
Cons ci ratio: 8.326037e-04	ci left: 8.454869e-01	ci right 8.461914e-01	k: 3417191	n:4040000
KS ci ratio: 2.263129e-01	ci left: 6.585816e-05	ci right 8.289185e-05	k: 299	n:4040000
PYGL   4040000 perm   6850 sec   (590 perm/sec)   p_kst 7.400990e-05   p_cons 8.458394e-01   p_joint 7.400990e-05

Joint ci ratio: 2.263129e-01	ci left: 6.569555e-05	ci right 8.268718e-05	k: 299	n:4050000
Cons ci ratio: 8.315652e-04	ci left: 8.454904e-01	ci right 8.461940e-01	k: 3425662	n:4050000
KS ci ratio: 2.263129e-01	ci left: 6.569555e-05	ci right 8.268718e-05	k: 299	n:4050000
PYGL   4050000 perm   6881 sec   (589 perm/sec)   p_kst 7.382716e-05   p_cons 8.458425e-01   p_joint 7.382716e-05

Joint ci ratio: 2.263129e-01	ci left: 6.553373e-05	ci right 8.248352e-05	k: 299	n:4060000
Cons ci ratio: 8.305306e-04	ci left: 8.454940e-01	ci right 8.461967e-01	k: 3434133	n:4060000
KS ci ratio: 2.263129e-01	ci left: 6.553373e-05	ci right 8.248352e-05	k: 299	n:4060000
PYGL   4060000 perm   6913 sec   (587 perm/sec)   p_kst 7.364532e-05   p_cons 8.458456e-01   p_joint 7.364532e-05

Joint ci ratio: 2.263129e-01	ci left: 6.537272e-05	ci right 8.228086e-05	k: 299	n:4070000
Cons ci ratio: 8.295343e-04	ci left: 8.454866e-01	ci right 8.461885e-01	k: 3442560	n:4070000
KS ci ratio: 2.263129e-01	ci left: 6.537272e-05	ci right 8.228086e-05	k: 299	n:4070000
PYGL   4070000 perm   6947 sec   (586 perm/sec)   p_kst 7.346437e-05   p_cons 8.458378e-01   p_joint 7.346437e-05

Joint ci ratio: 2.263130e-01	ci left: 6.521249e-05	ci right 8.207919e-05	k: 299	n:4080000
Cons ci ratio: 8.284971e-04	ci left: 8.454934e-01	ci right 8.461944e-01	k: 3451044	n:4080000
KS ci ratio: 2.263130e-01	ci left: 6.521249e-05	ci right 8.207919e-05	k: 299	n:4080000
PYGL   4080000 perm   6978 sec   (585 perm/sec)   p_kst 7.328431e-05   p_cons 8.458441e-01   p_joint 7.328431e-05

Joint ci ratio: 2.259367e-01	ci left: 6.528370e-05	ci right 8.213683e-05	k: 300	n:4090000
Cons ci ratio: 8.274630e-04	ci left: 8.455003e-01	ci right 8.462004e-01	k: 3459529	n:4090000
KS ci ratio: 2.259367e-01	ci left: 6.528370e-05	ci right 8.213683e-05	k: 300	n:4090000
PYGL   4090000 perm   7010 sec   (583 perm/sec)   p_kst 7.334963e-05   p_cons 8.458506e-01   p_joint 7.334963e-05

Joint ci ratio: 2.255623e-01	ci left: 6.535458e-05	ci right 8.219417e-05	k: 301	n:4100000
Cons ci ratio: 8.264475e-04	ci left: 8.455026e-01	ci right 8.462018e-01	k: 3467995	n:4100000
KS ci ratio: 2.255623e-01	ci left: 6.535458e-05	ci right 8.219417e-05	k: 301	n:4100000
PYGL   4100000 perm   7042 sec   (582 perm/sec)   p_kst 7.341463e-05   p_cons 8.458524e-01   p_joint 7.341463e-05

Joint ci ratio: 2.248191e-01	ci left: 6.565474e-05	ci right 8.250820e-05	k: 303	n:4110000
Cons ci ratio: 8.254404e-04	ci left: 8.455033e-01	ci right 8.462018e-01	k: 3476455	n:4110000
KS ci ratio: 2.248191e-01	ci left: 6.565474e-05	ci right 8.250820e-05	k: 303	n:4110000
PYGL   4110000 perm   7074 sec   (581 perm/sec)   p_kst 7.372263e-05   p_cons 8.458528e-01   p_joint 7.372263e-05

Joint ci ratio: 2.248191e-01	ci left: 6.549538e-05	ci right 8.230794e-05	k: 303	n:4120000
Cons ci ratio: 8.244269e-04	ci left: 8.455073e-01	ci right 8.462049e-01	k: 3484928	n:4120000
KS ci ratio: 2.248191e-01	ci left: 6.549538e-05	ci right 8.230794e-05	k: 303	n:4120000
PYGL   4120000 perm   7106 sec   (580 perm/sec)   p_kst 7.354369e-05   p_cons 8.458563e-01   p_joint 7.354369e-05

Joint ci ratio: 2.248191e-01	ci left: 6.533679e-05	ci right 8.210865e-05	k: 303	n:4130000
Cons ci ratio: 8.234149e-04	ci left: 8.455119e-01	ci right 8.462087e-01	k: 3493404	n:4130000
KS ci ratio: 2.248191e-01	ci left: 6.533679e-05	ci right 8.210865e-05	k: 303	n:4130000
PYGL   4130000 perm   7139 sec   (579 perm/sec)   p_kst 7.336562e-05   p_cons 8.458605e-01   p_joint 7.336562e-05

Joint ci ratio: 2.248191e-01	ci left: 6.517898e-05	ci right 8.191032e-05	k: 303	n:4140000
Cons ci ratio: 8.224058e-04	ci left: 8.455168e-01	ci right 8.462127e-01	k: 3501881	n:4140000
KS ci ratio: 2.248191e-01	ci left: 6.517898e-05	ci right 8.191032e-05	k: 303	n:4140000
PYGL   4140000 perm   7171 sec   (577 perm/sec)   p_kst 7.318841e-05   p_cons 8.458650e-01   p_joint 7.318841e-05

Joint ci ratio: 2.244503e-01	ci left: 6.524932e-05	ci right 8.196745e-05	k: 304	n:4150000
Cons ci ratio: 8.214118e-04	ci left: 8.455180e-01	ci right 8.462131e-01	k: 3510343	n:4150000
KS ci ratio: 2.244503e-01	ci left: 6.524932e-05	ci right 8.196745e-05	k: 304	n:4150000
PYGL   4150000 perm   7203 sec   (576 perm/sec)   p_kst 7.325301e-05   p_cons 8.458658e-01   p_joint 7.325301e-05

Joint ci ratio: 2.244503e-01	ci left: 6.509247e-05	ci right 8.177041e-05	k: 304	n:4160000
Cons ci ratio: 8.204123e-04	ci left: 8.455221e-01	ci right 8.462163e-01	k: 3518817	n:4160000
KS ci ratio: 2.244503e-01	ci left: 6.509247e-05	ci right 8.177041e-05	k: 304	n:4160000
PYGL   4160000 perm   7235 sec   (575 perm/sec)   p_kst 7.307692e-05   p_cons 8.458695e-01   p_joint 7.307692e-05

Joint ci ratio: 2.244503e-01	ci left: 6.493638e-05	ci right 8.157432e-05	k: 304	n:4170000
Cons ci ratio: 8.194715e-04	ci left: 8.455087e-01	ci right 8.462021e-01	k: 3527218	n:4170000
KS ci ratio: 2.244503e-01	ci left: 6.493638e-05	ci right 8.157432e-05	k: 304	n:4170000
PYGL   4170000 perm   7268 sec   (574 perm/sec)   p_kst 7.290168e-05   p_cons 8.458556e-01   p_joint 7.290168e-05

Joint ci ratio: 2.244503e-01	ci left: 6.478103e-05	ci right 8.137917e-05	k: 304	n:4180000
Cons ci ratio: 8.184723e-04	ci left: 8.455150e-01	ci right 8.462075e-01	k: 3535701	n:4180000
KS ci ratio: 2.244503e-01	ci left: 6.478103e-05	ci right 8.137917e-05	k: 304	n:4180000
PYGL   4180000 perm   7301 sec   (572 perm/sec)   p_kst 7.272727e-05   p_cons 8.458615e-01   p_joint 7.272727e-05

Joint ci ratio: 2.240833e-01	ci left: 6.485167e-05	ci right 8.143699e-05	k: 305	n:4190000
Cons ci ratio: 8.174738e-04	ci left: 8.455222e-01	ci right 8.462139e-01	k: 3544188	n:4190000
KS ci ratio: 2.240833e-01	ci left: 6.485167e-05	ci right 8.143699e-05	k: 305	n:4190000
PYGL   4190000 perm   7334 sec   (571 perm/sec)   p_kst 7.279236e-05   p_cons 8.458683e-01   p_joint 7.279236e-05

Joint ci ratio: 2.237180e-01	ci left: 6.492201e-05	ci right 8.149452e-05	k: 306	n:4200000
Cons ci ratio: 8.165118e-04	ci left: 8.455188e-01	ci right 8.462097e-01	k: 3552631	n:4200000
KS ci ratio: 2.237180e-01	ci left: 6.492201e-05	ci right 8.149452e-05	k: 306	n:4200000
PYGL   4200000 perm   7367 sec   (570 perm/sec)   p_kst 7.285714e-05   p_cons 8.458645e-01   p_joint 7.285714e-05

Joint ci ratio: 2.233545e-01	ci left: 6.499203e-05	ci right 8.155175e-05	k: 307	n:4210000
Cons ci ratio: 8.155583e-04	ci left: 8.455139e-01	ci right 8.462039e-01	k: 3561067	n:4210000
KS ci ratio: 2.233545e-01	ci left: 6.499203e-05	ci right 8.155175e-05	k: 307	n:4210000
PYGL   4210000 perm   7401 sec   (569 perm/sec)   p_kst 7.292162e-05   p_cons 8.458591e-01   p_joint 7.292162e-05

Joint ci ratio: 2.233546e-01	ci left: 6.483802e-05	ci right 8.135850e-05	k: 307	n:4220000
Cons ci ratio: 8.145874e-04	ci left: 8.455156e-01	ci right 8.462048e-01	k: 3569531	n:4220000
KS ci ratio: 2.233546e-01	ci left: 6.483802e-05	ci right 8.135850e-05	k: 307	n:4220000
PYGL   4220000 perm   7434 sec   (568 perm/sec)   p_kst 7.274882e-05   p_cons 8.458604e-01   p_joint 7.274882e-05

Joint ci ratio: 2.229928e-01	ci left: 6.490793e-05	ci right 8.141577e-05	k: 308	n:4230000
Cons ci ratio: 8.135846e-04	ci left: 8.455286e-01	ci right 8.462170e-01	k: 3578043	n:4230000
KS ci ratio: 2.229928e-01	ci left: 6.490793e-05	ci right 8.141577e-05	k: 308	n:4230000
PYGL   4230000 perm   7468 sec   (566 perm/sec)   p_kst 7.281324e-05   p_cons 8.458730e-01   p_joint 7.281324e-05

Joint ci ratio: 2.229929e-01	ci left: 6.475485e-05	ci right 8.122375e-05	k: 308	n:4240000
Cons ci ratio: 8.126112e-04	ci left: 8.455333e-01	ci right 8.462209e-01	k: 3586520	n:4240000
KS ci ratio: 2.229929e-01	ci left: 6.475485e-05	ci right 8.122375e-05	k: 308	n:4240000
PYGL   4240000 perm   7501 sec   (565 perm/sec)   p_kst 7.264151e-05   p_cons 8.458774e-01   p_joint 7.264151e-05

Joint ci ratio: 2.226329e-01	ci left: 6.482464e-05	ci right 8.128104e-05	k: 309	n:4250000
Cons ci ratio: 8.116757e-04	ci left: 8.455270e-01	ci right 8.462138e-01	k: 3594950	n:4250000
KS ci ratio: 2.226329e-01	ci left: 6.482464e-05	ci right 8.128104e-05	k: 309	n:4250000
PYGL   4250000 perm   7534 sec   (564 perm/sec)   p_kst 7.270588e-05   p_cons 8.458706e-01   p_joint 7.270588e-05

Joint ci ratio: 2.222747e-01	ci left: 6.489414e-05	ci right 8.133804e-05	k: 310	n:4260000
Cons ci ratio: 8.107339e-04	ci left: 8.455237e-01	ci right 8.462097e-01	k: 3603393	n:4260000
KS ci ratio: 2.222747e-01	ci left: 6.489414e-05	ci right 8.133804e-05	k: 310	n:4260000
PYGL   4260000 perm   7567 sec   (563 perm/sec)   p_kst 7.276995e-05   p_cons 8.458669e-01   p_joint 7.276995e-05

Joint ci ratio: 2.215634e-01	ci left: 6.518451e-05	ci right 8.164193e-05	k: 312	n:4270000
Cons ci ratio: 8.097794e-04	ci left: 8.455256e-01	ci right 8.462107e-01	k: 3611858	n:4270000
KS ci ratio: 2.215634e-01	ci left: 6.518451e-05	ci right 8.164193e-05	k: 312	n:4270000
PYGL   4270000 perm   7600 sec   (562 perm/sec)   p_kst 7.306792e-05   p_cons 8.458684e-01   p_joint 7.306792e-05

Joint ci ratio: 2.215634e-01	ci left: 6.503221e-05	ci right 8.145118e-05	k: 312	n:4280000
Cons ci ratio: 8.088304e-04	ci left: 8.455267e-01	ci right 8.462111e-01	k: 3620320	n:4280000
KS ci ratio: 2.215634e-01	ci left: 6.503221e-05	ci right 8.145118e-05	k: 312	n:4280000
PYGL   4280000 perm   7634 sec   (561 perm/sec)   p_kst 7.289720e-05   p_cons 8.458692e-01   p_joint 7.289720e-05

Joint ci ratio: 2.212103e-01	ci left: 6.510080e-05	ci right 8.150732e-05	k: 313	n:4290000
Cons ci ratio: 8.078761e-04	ci left: 8.455307e-01	ci right 8.462143e-01	k: 3628794	n:4290000
KS ci ratio: 2.212103e-01	ci left: 6.510080e-05	ci right 8.150732e-05	k: 313	n:4290000
PYGL   4290000 perm   7668 sec   (559 perm/sec)   p_kst 7.296037e-05   p_cons 8.458727e-01   p_joint 7.296037e-05

Joint ci ratio: 2.208589e-01	ci left: 6.516908e-05	ci right 8.156318e-05	k: 314	n:4300000
Cons ci ratio: 8.068986e-04	ci left: 8.455433e-01	ci right 8.462260e-01	k: 3637305	n:4300000
KS ci ratio: 2.208589e-01	ci left: 6.516908e-05	ci right 8.156318e-05	k: 314	n:4300000
PYGL   4300000 perm   7703 sec   (558 perm/sec)   p_kst 7.302326e-05   p_cons 8.458849e-01   p_joint 7.302326e-05

Joint ci ratio: 2.205091e-01	ci left: 6.523707e-05	ci right 8.161876e-05	k: 315	n:4310000
Cons ci ratio: 8.059618e-04	ci left: 8.455437e-01	ci right 8.462257e-01	k: 3645764	n:4310000
KS ci ratio: 2.205091e-01	ci left: 6.523707e-05	ci right 8.161876e-05	k: 315	n:4310000
PYGL   4310000 perm   7737 sec   (557 perm/sec)   p_kst 7.308585e-05   p_cons 8.458849e-01   p_joint 7.308585e-05

Joint ci ratio: 2.205091e-01	ci left: 6.508606e-05	ci right 8.142983e-05	k: 315	n:4320000
Cons ci ratio: 8.049890e-04	ci left: 8.455569e-01	ci right 8.462380e-01	k: 3654278	n:4320000
KS ci ratio: 2.205091e-01	ci left: 6.508606e-05	ci right 8.142983e-05	k: 315	n:4320000
PYGL   4320000 perm   7770 sec   (556 perm/sec)   p_kst 7.291667e-05   p_cons 8.458977e-01   p_joint 7.291667e-05

Joint ci ratio: 2.201610e-01	ci left: 6.515395e-05	ci right 8.148544e-05	k: 316	n:4330000
Cons ci ratio: 8.041024e-04	ci left: 8.455432e-01	ci right 8.462236e-01	k: 3662676	n:4330000
KS ci ratio: 2.201610e-01	ci left: 6.515395e-05	ci right 8.148544e-05	k: 316	n:4330000
PYGL   4330000 perm   7804 sec   (555 perm/sec)   p_kst 7.297921e-05   p_cons 8.458836e-01   p_joint 7.297921e-05

Joint ci ratio: 2.194698e-01	ci left: 6.543928e-05	ci right 8.178384e-05	k: 318	n:4340000
Cons ci ratio: 8.031945e-04	ci left: 8.455374e-01	ci right 8.462170e-01	k: 3671108	n:4340000
KS ci ratio: 2.194698e-01	ci left: 6.543928e-05	ci right 8.178384e-05	k: 318	n:4340000
PYGL   4340000 perm   7837 sec   (554 perm/sec)   p_kst 7.327189e-05   p_cons 8.458774e-01   p_joint 7.327189e-05

Joint ci ratio: 2.194698e-01	ci left: 6.528885e-05	ci right 8.159584e-05	k: 318	n:4350000
Cons ci ratio: 8.022317e-04	ci left: 8.455505e-01	ci right 8.462293e-01	k: 3679622	n:4350000
KS ci ratio: 2.194698e-01	ci left: 6.528885e-05	ci right 8.159584e-05	k: 318	n:4350000
PYGL   4350000 perm   7871 sec   (553 perm/sec)   p_kst 7.310345e-05   p_cons 8.458901e-01   p_joint 7.310345e-05

Joint ci ratio: 2.184450e-01	ci left: 6.578945e-05	ci right 8.213443e-05	k: 321	n:4360000
Cons ci ratio: 8.013457e-04	ci left: 8.455396e-01	ci right 8.462177e-01	k: 3688032	n:4360000
KS ci ratio: 2.184450e-01	ci left: 6.578945e-05	ci right 8.213443e-05	k: 321	n:4360000
PYGL   4360000 perm   7905 sec   (552 perm/sec)   p_kst 7.362385e-05   p_cons 8.458789e-01   p_joint 7.362385e-05

Joint ci ratio: 2.184450e-01	ci left: 6.563890e-05	ci right 8.194649e-05	k: 321	n:4370000
Cons ci ratio: 8.003881e-04	ci left: 8.455531e-01	ci right 8.462304e-01	k: 3696548	n:4370000
KS ci ratio: 2.184450e-01	ci left: 6.563890e-05	ci right 8.194649e-05	k: 321	n:4370000
PYGL   4370000 perm   7939 sec   (550 perm/sec)   p_kst 7.345538e-05   p_cons 8.458920e-01   p_joint 7.345538e-05

Joint ci ratio: 2.184450e-01	ci left: 6.548904e-05	ci right 8.175939e-05	k: 321	n:4380000
Cons ci ratio: 7.994794e-04	ci left: 8.455517e-01	ci right 8.462282e-01	k: 3704999	n:4380000
KS ci ratio: 2.184450e-01	ci left: 6.548904e-05	ci right 8.175939e-05	k: 321	n:4380000
PYGL   4380000 perm   7974 sec   (549 perm/sec)   p_kst 7.328767e-05   p_cons 8.458902e-01   p_joint 7.328767e-05

Joint ci ratio: 2.184450e-01	ci left: 6.533986e-05	ci right 8.157315e-05	k: 321	n:4390000
Cons ci ratio: 7.986073e-04	ci left: 8.455394e-01	ci right 8.462151e-01	k: 3713402	n:4390000
KS ci ratio: 2.184450e-01	ci left: 6.533986e-05	ci right 8.157315e-05	k: 321	n:4390000
PYGL   4390000 perm   8009 sec   (548 perm/sec)   p_kst 7.312073e-05   p_cons 8.458774e-01   p_joint 7.312073e-05

Joint ci ratio: 2.181066e-01	ci left: 6.540621e-05	ci right 8.162744e-05	k: 322	n:4400000
Cons ci ratio: 7.977235e-04	ci left: 8.455318e-01	ci right 8.462068e-01	k: 3721826	n:4400000
KS ci ratio: 2.181066e-01	ci left: 6.540621e-05	ci right 8.162744e-05	k: 322	n:4400000
PYGL   4400000 perm   8043 sec   (547 perm/sec)   p_kst 7.318182e-05   p_cons 8.458695e-01   p_joint 7.318182e-05

Joint ci ratio: 2.181066e-01	ci left: 6.525789e-05	ci right 8.144234e-05	k: 322	n:4410000
Cons ci ratio: 7.967941e-04	ci left: 8.455402e-01	ci right 8.462144e-01	k: 3730320	n:4410000
KS ci ratio: 2.181066e-01	ci left: 6.525789e-05	ci right 8.144234e-05	k: 322	n:4410000
PYGL   4410000 perm   8078 sec   (546 perm/sec)   p_kst 7.301587e-05   p_cons 8.458776e-01   p_joint 7.301587e-05

Joint ci ratio: 2.181066e-01	ci left: 6.511025e-05	ci right 8.125809e-05	k: 322	n:4420000
Cons ci ratio: 7.959072e-04	ci left: 8.455357e-01	ci right 8.462091e-01	k: 3738757	n:4420000
KS ci ratio: 2.181066e-01	ci left: 6.511025e-05	ci right 8.125809e-05	k: 322	n:4420000
PYGL   4420000 perm   8113 sec   (545 perm/sec)   p_kst 7.285068e-05   p_cons 8.458726e-01   p_joint 7.285068e-05

Joint ci ratio: 2.177698e-01	ci left: 6.517669e-05	ci right 8.131269e-05	k: 323	n:4430000
Cons ci ratio: 7.950013e-04	ci left: 8.455384e-01	ci right 8.462111e-01	k: 3747226	n:4430000
KS ci ratio: 2.177698e-01	ci left: 6.517669e-05	ci right 8.131269e-05	k: 323	n:4430000
PYGL   4430000 perm   8147 sec   (544 perm/sec)   p_kst 7.291196e-05   p_cons 8.458749e-01   p_joint 7.291196e-05

Joint ci ratio: 2.174345e-01	ci left: 6.524284e-05	ci right 8.136704e-05	k: 324	n:4440000
Cons ci ratio: 7.941191e-04	ci left: 8.455343e-01	ci right 8.462062e-01	k: 3755665	n:4440000
KS ci ratio: 2.174345e-01	ci left: 6.524284e-05	ci right 8.136704e-05	k: 324	n:4440000
PYGL   4440000 perm   8182 sec   (543 perm/sec)   p_kst 7.297297e-05   p_cons 8.458705e-01   p_joint 7.297297e-05

Joint ci ratio: 2.171007e-01	ci left: 6.530872e-05	ci right 8.142112e-05	k: 325	n:4450000
Cons ci ratio: 7.932617e-04	ci left: 8.455231e-01	ci right 8.461943e-01	k: 3764072	n:4450000
KS ci ratio: 2.171007e-01	ci left: 6.530872e-05	ci right 8.142112e-05	k: 325	n:4450000
PYGL   4450000 perm   8218 sec   (542 perm/sec)   p_kst 7.303371e-05   p_cons 8.458589e-01   p_joint 7.303371e-05

Joint ci ratio: 2.171008e-01	ci left: 6.516229e-05	ci right 8.123856e-05	k: 325	n:4460000
Cons ci ratio: 7.923559e-04	ci left: 8.455287e-01	ci right 8.461991e-01	k: 3772554	n:4460000
KS ci ratio: 2.171008e-01	ci left: 6.516229e-05	ci right 8.123856e-05	k: 325	n:4460000
PYGL   4460000 perm   8253 sec   (540 perm/sec)   p_kst 7.286996e-05   p_cons 8.458641e-01   p_joint 7.286996e-05

Joint ci ratio: 2.164378e-01	ci left: 6.543965e-05	ci right 8.152850e-05	k: 327	n:4470000
Cons ci ratio: 7.914410e-04	ci left: 8.455383e-01	ci right 8.462080e-01	k: 3781054	n:4470000
KS ci ratio: 2.164378e-01	ci left: 6.543965e-05	ci right 8.152850e-05	k: 327	n:4470000
PYGL   4470000 perm   8288 sec   (539 perm/sec)   p_kst 7.315436e-05   p_cons 8.458734e-01   p_joint 7.315436e-05

Joint ci ratio: 2.157809e-01	ci left: 6.571585e-05	ci right 8.181707e-05	k: 329	n:4480000
Cons ci ratio: 7.905347e-04	ci left: 8.455461e-01	ci right 8.462150e-01	k: 3789546	n:4480000
KS ci ratio: 2.157809e-01	ci left: 6.571585e-05	ci right 8.181707e-05	k: 329	n:4480000
PYGL   4480000 perm   8323 sec   (538 perm/sec)   p_kst 7.343750e-05   p_cons 8.458808e-01   p_joint 7.343750e-05

Joint ci ratio: 2.151300e-01	ci left: 6.599089e-05	ci right 8.210428e-05	k: 331	n:4490000
Cons ci ratio: 7.896781e-04	ci left: 8.455385e-01	ci right 8.462067e-01	k: 3797969	n:4490000
KS ci ratio: 2.151300e-01	ci left: 6.599089e-05	ci right 8.210428e-05	k: 331	n:4490000
PYGL   4490000 perm   8358 sec   (537 perm/sec)   p_kst 7.371938e-05   p_cons 8.458728e-01   p_joint 7.371938e-05

Joint ci ratio: 2.148067e-01	ci left: 6.605450e-05	ci right 8.215599e-05	k: 332	n:4500000
Cons ci ratio: 7.887791e-04	ci left: 8.455458e-01	ci right 8.462133e-01	k: 3806459	n:4500000
KS ci ratio: 2.148067e-01	ci left: 6.605450e-05	ci right 8.215599e-05	k: 332	n:4500000
PYGL   4500000 perm   8393 sec   (536 perm/sec)   p_kst 7.377778e-05   p_cons 8.458798e-01   p_joint 7.377778e-05

Joint ci ratio: 2.141645e-01	ci left: 6.632768e-05	ci right 8.244107e-05	k: 334	n:4510000
Cons ci ratio: 7.879134e-04	ci left: 8.455432e-01	ci right 8.462098e-01	k: 3814904	n:4510000
KS ci ratio: 2.141645e-01	ci left: 6.632768e-05	ci right 8.244107e-05	k: 334	n:4510000
PYGL   4510000 perm   8429 sec   (535 perm/sec)   p_kst 7.405765e-05   p_cons 8.458767e-01   p_joint 7.405765e-05

Joint ci ratio: 2.141645e-01	ci left: 6.618093e-05	ci right 8.225868e-05	k: 334	n:4520000
Cons ci ratio: 7.870352e-04	ci left: 8.455456e-01	ci right 8.462115e-01	k: 3823372	n:4520000
KS ci ratio: 2.141645e-01	ci left: 6.618093e-05	ci right 8.225868e-05	k: 334	n:4520000
PYGL   4520000 perm   8464 sec   (534 perm/sec)   p_kst 7.389381e-05   p_cons 8.458788e-01   p_joint 7.389381e-05

Joint ci ratio: 2.141645e-01	ci left: 6.603484e-05	ci right 8.207709e-05	k: 334	n:4530000
Cons ci ratio: 7.862018e-04	ci left: 8.455341e-01	ci right 8.461993e-01	k: 3831777	n:4530000
KS ci ratio: 2.141645e-01	ci left: 6.603484e-05	ci right 8.207709e-05	k: 334	n:4530000
PYGL   4530000 perm   8499 sec   (533 perm/sec)   p_kst 7.373068e-05   p_cons 8.458669e-01   p_joint 7.373068e-05

Joint ci ratio: 2.138456e-01	ci left: 6.609785e-05	ci right 8.212836e-05	k: 335	n:4540000
Cons ci ratio: 7.853684e-04	ci left: 8.455235e-01	ci right 8.461880e-01	k: 3840186	n:4540000
KS ci ratio: 2.138456e-01	ci left: 6.609785e-05	ci right 8.212836e-05	k: 335	n:4540000
PYGL   4540000 perm   8534 sec   (532 perm/sec)   p_kst 7.378855e-05   p_cons 8.458559e-01   p_joint 7.378855e-05

Joint ci ratio: 2.138456e-01	ci left: 6.595258e-05	ci right 8.194786e-05	k: 335	n:4550000
Cons ci ratio: 7.844656e-04	ci left: 8.455369e-01	ci right 8.462007e-01	k: 3848704	n:4550000
KS ci ratio: 2.138456e-01	ci left: 6.595258e-05	ci right 8.194786e-05	k: 335	n:4550000
PYGL   4550000 perm   8570 sec   (531 perm/sec)   p_kst 7.362637e-05   p_cons 8.458690e-01   p_joint 7.362637e-05

Joint ci ratio: 2.138456e-01	ci left: 6.580794e-05	ci right 8.176815e-05	k: 335	n:4560000
Cons ci ratio: 7.836048e-04	ci left: 8.455373e-01	ci right 8.462004e-01	k: 3857163	n:4560000
KS ci ratio: 2.138456e-01	ci left: 6.580794e-05	ci right 8.176815e-05	k: 335	n:4560000
PYGL   4560000 perm   8605 sec   (530 perm/sec)   p_kst 7.346491e-05   p_cons 8.458691e-01   p_joint 7.346491e-05

Joint ci ratio: 2.138456e-01	ci left: 6.566394e-05	ci right 8.158923e-05	k: 335	n:4570000
Cons ci ratio: 7.827316e-04	ci left: 8.455428e-01	ci right 8.462051e-01	k: 3865645	n:4570000
KS ci ratio: 2.138456e-01	ci left: 6.566394e-05	ci right 8.158923e-05	k: 335	n:4570000
PYGL   4570000 perm   8641 sec   (529 perm/sec)   p_kst 7.330416e-05   p_cons 8.458742e-01   p_joint 7.330416e-05

Joint ci ratio: 2.135281e-01	ci left: 6.572723e-05	ci right 8.164109e-05	k: 336	n:4580000
Cons ci ratio: 7.818804e-04	ci left: 8.455419e-01	ci right 8.462035e-01	k: 3874098	n:4580000
KS ci ratio: 2.135281e-01	ci left: 6.572723e-05	ci right 8.164109e-05	k: 336	n:4580000
PYGL   4580000 perm   8677 sec   (528 perm/sec)   p_kst 7.336245e-05   p_cons 8.458729e-01   p_joint 7.336245e-05

Joint ci ratio: 2.135281e-01	ci left: 6.558403e-05	ci right 8.146322e-05	k: 336	n:4590000
Cons ci ratio: 7.810587e-04	ci left: 8.455321e-01	ci right 8.461930e-01	k: 3882510	n:4590000
KS ci ratio: 2.135281e-01	ci left: 6.558403e-05	ci right 8.146322e-05	k: 336	n:4590000
PYGL   4590000 perm   8712 sec   (527 perm/sec)   p_kst 7.320261e-05   p_cons 8.458627e-01   p_joint 7.320261e-05

Joint ci ratio: 2.122720e-01	ci left: 6.626466e-05	ci right 8.220199e-05	k: 340	n:4600000
Cons ci ratio: 7.801869e-04	ci left: 8.455399e-01	ci right 8.462001e-01	k: 3891003	n:4600000
KS ci ratio: 2.122720e-01	ci left: 6.626466e-05	ci right 8.220199e-05	k: 340	n:4600000
PYGL   4600000 perm   8749 sec   (526 perm/sec)   p_kst 7.391304e-05   p_cons 8.458702e-01   p_joint 7.391304e-05

Joint ci ratio: 2.119614e-01	ci left: 6.632632e-05	ci right 8.225210e-05	k: 341	n:4610000
Cons ci ratio: 7.793518e-04	ci left: 8.455364e-01	ci right 8.461959e-01	k: 3899444	n:4610000
KS ci ratio: 2.119614e-01	ci left: 6.632632e-05	ci right 8.225210e-05	k: 341	n:4610000
PYGL   4610000 perm   8785 sec   (525 perm/sec)   p_kst 7.396963e-05   p_cons 8.458664e-01   p_joint 7.396963e-05

Joint ci ratio: 2.119615e-01	ci left: 6.618276e-05	ci right 8.207407e-05	k: 341	n:4620000
Cons ci ratio: 7.785135e-04	ci left: 8.455349e-01	ci right 8.461936e-01	k: 3907894	n:4620000
KS ci ratio: 2.119615e-01	ci left: 6.618276e-05	ci right 8.207407e-05	k: 341	n:4620000
PYGL   4620000 perm   8821 sec   (524 perm/sec)   p_kst 7.380952e-05   p_cons 8.458645e-01   p_joint 7.380952e-05

Joint ci ratio: 2.119615e-01	ci left: 6.603981e-05	ci right 8.189680e-05	k: 341	n:4630000
Cons ci ratio: 7.776508e-04	ci left: 8.455425e-01	ci right 8.462005e-01	k: 3916386	n:4630000
KS ci ratio: 2.119615e-01	ci left: 6.603981e-05	ci right 8.189680e-05	k: 341	n:4630000
PYGL   4630000 perm   8857 sec   (523 perm/sec)   p_kst 7.365011e-05   p_cons 8.458717e-01   p_joint 7.365011e-05

Joint ci ratio: 2.113444e-01	ci left: 6.630567e-05	ci right 8.217414e-05	k: 343	n:4640000
Cons ci ratio: 7.768263e-04	ci left: 8.455382e-01	ci right 8.461955e-01	k: 3924823	n:4640000
KS ci ratio: 2.113444e-01	ci left: 6.630567e-05	ci right 8.217414e-05	k: 343	n:4640000
PYGL   4640000 perm   8893 sec   (522 perm/sec)   p_kst 7.392241e-05   p_cons 8.458670e-01   p_joint 7.392241e-05

Joint ci ratio: 2.113444e-01	ci left: 6.616308e-05	ci right 8.199743e-05	k: 343	n:4650000
Cons ci ratio: 7.760006e-04	ci left: 8.455351e-01	ci right 8.461917e-01	k: 3933266	n:4650000
KS ci ratio: 2.113444e-01	ci left: 6.616308e-05	ci right 8.199743e-05	k: 343	n:4650000
PYGL   4650000 perm   8929 sec   (521 perm/sec)   p_kst 7.376344e-05   p_cons 8.458637e-01   p_joint 7.376344e-05

Joint ci ratio: 2.110379e-01	ci left: 6.622434e-05	ci right 8.204739e-05	k: 344	n:4660000
Cons ci ratio: 7.751437e-04	ci left: 8.455435e-01	ci right 8.461994e-01	k: 3941762	n:4660000
KS ci ratio: 2.110379e-01	ci left: 6.622434e-05	ci right 8.204739e-05	k: 344	n:4660000
PYGL   4660000 perm   8966 sec   (520 perm/sec)   p_kst 7.381974e-05   p_cons 8.458717e-01   p_joint 7.381974e-05

Joint ci ratio: 2.104288e-01	ci left: 6.648820e-05	ci right 8.232253e-05	k: 346	n:4670000
Cons ci ratio: 7.742864e-04	ci left: 8.455529e-01	ci right 8.462081e-01	k: 3950263	n:4670000
KS ci ratio: 2.104288e-01	ci left: 6.648820e-05	ci right 8.232253e-05	k: 346	n:4670000
PYGL   4670000 perm   9003 sec   (519 perm/sec)   p_kst 7.408994e-05   p_cons 8.458807e-01   p_joint 7.408994e-05

Joint ci ratio: 2.101262e-01	ci left: 6.654856e-05	ci right 8.237154e-05	k: 347	n:4680000
Cons ci ratio: 7.734954e-04	ci left: 8.455409e-01	ci right 8.461954e-01	k: 3958664	n:4680000
KS ci ratio: 2.101262e-01	ci left: 6.654856e-05	ci right 8.237154e-05	k: 347	n:4680000
PYGL   4680000 perm   9040 sec   (518 perm/sec)   p_kst 7.414530e-05   p_cons 8.458684e-01   p_joint 7.414530e-05

Joint ci ratio: 2.095250e-01	ci left: 6.681070e-05	ci right 8.264472e-05	k: 349	n:4690000
Cons ci ratio: 7.726872e-04	ci left: 8.455356e-01	ci right 8.461894e-01	k: 3967096	n:4690000
KS ci ratio: 2.095250e-01	ci left: 6.681070e-05	ci right 8.264472e-05	k: 349	n:4690000
PYGL   4690000 perm   9077 sec   (517 perm/sec)   p_kst 7.441365e-05   p_cons 8.458627e-01   p_joint 7.441365e-05

Joint ci ratio: 2.095250e-01	ci left: 6.666855e-05	ci right 8.246888e-05	k: 349	n:4700000
Cons ci ratio: 7.718796e-04	ci left: 8.455309e-01	ci right 8.461840e-01	k: 3975531	n:4700000
KS ci ratio: 2.095250e-01	ci left: 6.666855e-05	ci right 8.246888e-05	k: 349	n:4700000
PYGL   4700000 perm   9114 sec   (516 perm/sec)   p_kst 7.425532e-05   p_cons 8.458577e-01   p_joint 7.425532e-05

Joint ci ratio: 2.095250e-01	ci left: 6.652700e-05	ci right 8.229379e-05	k: 349	n:4710000
Cons ci ratio: 7.710608e-04	ci left: 8.455309e-01	ci right 8.461833e-01	k: 3983988	n:4710000
KS ci ratio: 2.095250e-01	ci left: 6.652700e-05	ci right 8.229379e-05	k: 349	n:4710000
PYGL   4710000 perm   9151 sec   (515 perm/sec)   p_kst 7.409766e-05   p_cons 8.458573e-01   p_joint 7.409766e-05

Joint ci ratio: 2.095250e-01	ci left: 6.638605e-05	ci right 8.211944e-05	k: 349	n:4720000
Cons ci ratio: 7.702076e-04	ci left: 8.455434e-01	ci right 8.461951e-01	k: 3992504	n:4720000
KS ci ratio: 2.095250e-01	ci left: 6.638605e-05	ci right 8.211944e-05	k: 349	n:4720000
PYGL   4720000 perm   9188 sec   (514 perm/sec)   p_kst 7.394068e-05   p_cons 8.458695e-01   p_joint 7.394068e-05

Joint ci ratio: 2.092263e-01	ci left: 6.644603e-05	ci right 8.216831e-05	k: 350	n:4730000
Cons ci ratio: 7.693641e-04	ci left: 8.455536e-01	ci right 8.462046e-01	k: 4001009	n:4730000
KS ci ratio: 2.092263e-01	ci left: 6.644603e-05	ci right 8.216831e-05	k: 350	n:4730000
PYGL   4730000 perm   9225 sec   (513 perm/sec)   p_kst 7.399577e-05   p_cons 8.458793e-01   p_joint 7.399577e-05

Joint ci ratio: 2.092264e-01	ci left: 6.630585e-05	ci right 8.199496e-05	k: 350	n:4740000
Cons ci ratio: 7.685514e-04	ci left: 8.455542e-01	ci right 8.462045e-01	k: 4009469	n:4740000
KS ci ratio: 2.092264e-01	ci left: 6.630585e-05	ci right 8.199496e-05	k: 350	n:4740000
PYGL   4740000 perm   9262 sec   (512 perm/sec)   p_kst 7.383966e-05   p_cons 8.458795e-01   p_joint 7.383966e-05

Joint ci ratio: 2.092264e-01	ci left: 6.616626e-05	ci right 8.182234e-05	k: 350	n:4750000
Cons ci ratio: 7.677176e-04	ci left: 8.455628e-01	ci right 8.462124e-01	k: 4017967	n:4750000
KS ci ratio: 2.092264e-01	ci left: 6.616626e-05	ci right 8.182234e-05	k: 350	n:4750000
PYGL   4750000 perm   9299 sec   (511 perm/sec)   p_kst 7.368421e-05   p_cons 8.458878e-01   p_joint 7.368421e-05

Joint ci ratio: 2.086328e-01	ci left: 6.642544e-05	ci right 8.209256e-05	k: 352	n:4760000
Cons ci ratio: 7.668953e-04	ci left: 8.455684e-01	ci right 8.462173e-01	k: 4026451	n:4760000
KS ci ratio: 2.086328e-01	ci left: 6.642544e-05	ci right 8.209256e-05	k: 352	n:4760000
PYGL   4760000 perm   9336 sec   (510 perm/sec)   p_kst 7.394958e-05   p_cons 8.458931e-01   p_joint 7.394958e-05

Joint ci ratio: 2.086328e-01	ci left: 6.628618e-05	ci right 8.192046e-05	k: 352	n:4770000
Cons ci ratio: 7.660977e-04	ci left: 8.455664e-01	ci right 8.462147e-01	k: 4034899	n:4770000
KS ci ratio: 2.086328e-01	ci left: 6.628618e-05	ci right 8.192046e-05	k: 352	n:4770000
PYGL   4770000 perm   9374 sec   (509 perm/sec)   p_kst 7.379455e-05   p_cons 8.458908e-01   p_joint 7.379455e-05

Joint ci ratio: 2.080443e-01	ci left: 6.654409e-05	ci right 8.218929e-05	k: 354	n:4780000
Cons ci ratio: 7.652338e-04	ci left: 8.455880e-01	ci right 8.462355e-01	k: 4043459	n:4780000
KS ci ratio: 2.080443e-01	ci left: 6.654409e-05	ci right 8.218929e-05	k: 354	n:4780000
PYGL   4780000 perm   9411 sec   (508 perm/sec)   p_kst 7.405858e-05   p_cons 8.459119e-01   p_joint 7.405858e-05

Joint ci ratio: 2.074606e-01	ci left: 6.680098e-05	ci right 8.245693e-05	k: 356	n:4790000
Cons ci ratio: 7.644310e-04	ci left: 8.455895e-01	ci right 8.462364e-01	k: 4051924	n:4790000
KS ci ratio: 2.074606e-01	ci left: 6.680098e-05	ci right 8.245693e-05	k: 356	n:4790000
PYGL   4790000 perm   9448 sec   (507 perm/sec)   p_kst 7.432150e-05   p_cons 8.459132e-01   p_joint 7.432150e-05

Joint ci ratio: 2.074607e-01	ci left: 6.666181e-05	ci right 8.228514e-05	k: 356	n:4800000
Cons ci ratio: 7.636411e-04	ci left: 8.455875e-01	ci right 8.462337e-01	k: 4060372	n:4800000
KS ci ratio: 2.074607e-01	ci left: 6.666181e-05	ci right 8.228514e-05	k: 356	n:4800000
PYGL   4800000 perm   9486 sec   (506 perm/sec)   p_kst 7.416667e-05   p_cons 8.459108e-01   p_joint 7.416667e-05

Joint ci ratio: 2.074607e-01	ci left: 6.652322e-05	ci right 8.211407e-05	k: 356	n:4810000
Cons ci ratio: 7.628306e-04	ci left: 8.455935e-01	ci right 8.462390e-01	k: 4068858	n:4810000
KS ci ratio: 2.074607e-01	ci left: 6.652322e-05	ci right 8.211407e-05	k: 356	n:4810000
PYGL   4810000 perm   9524 sec   (505 perm/sec)   p_kst 7.401247e-05   p_cons 8.459164e-01   p_joint 7.401247e-05

Joint ci ratio: 2.074607e-01	ci left: 6.638521e-05	ci right 8.194371e-05	k: 356	n:4820000
Cons ci ratio: 7.620523e-04	ci left: 8.455892e-01	ci right 8.462340e-01	k: 4077295	n:4820000
KS ci ratio: 2.074607e-01	ci left: 6.638521e-05	ci right 8.194371e-05	k: 356	n:4820000
PYGL   4820000 perm   9561 sec   (504 perm/sec)   p_kst 7.385892e-05   p_cons 8.459118e-01   p_joint 7.385892e-05

Joint ci ratio: 2.071707e-01	ci left: 6.644406e-05	ci right 8.199183e-05	k: 357	n:4830000
Cons ci ratio: 7.612655e-04	ci left: 8.455887e-01	ci right 8.462328e-01	k: 4085750	n:4830000
KS ci ratio: 2.071707e-01	ci left: 6.644406e-05	ci right 8.199183e-05	k: 357	n:4830000
PYGL   4830000 perm   9599 sec   (503 perm/sec)   p_kst 7.391304e-05   p_cons 8.459110e-01   p_joint 7.391304e-05

Joint ci ratio: 2.065944e-01	ci left: 6.669859e-05	ci right 8.225702e-05	k: 359	n:4840000
Cons ci ratio: 7.604359e-04	ci left: 8.456037e-01	ci right 8.462471e-01	k: 4094280	n:4840000
KS ci ratio: 2.065944e-01	ci left: 6.669859e-05	ci right 8.225702e-05	k: 359	n:4840000
PYGL   4840000 perm   9636 sec   (502 perm/sec)   p_kst 7.417355e-05   p_cons 8.459256e-01   p_joint 7.417355e-05

Joint ci ratio: 2.063081e-01	ci left: 6.675660e-05	ci right 8.230425e-05	k: 360	n:4850000
Cons ci ratio: 7.596355e-04	ci left: 8.456095e-01	ci right 8.462523e-01	k: 4102766	n:4850000
KS ci ratio: 2.063081e-01	ci left: 6.675660e-05	ci right 8.230425e-05	k: 360	n:4850000
PYGL   4850000 perm   9674 sec   (501 perm/sec)   p_kst 7.422680e-05   p_cons 8.459311e-01   p_joint 7.422680e-05

Joint ci ratio: 2.063081e-01	ci left: 6.661924e-05	ci right 8.213490e-05	k: 360	n:4860000
Cons ci ratio: 7.588729e-04	ci left: 8.456032e-01	ci right 8.462454e-01	k: 4111193	n:4860000
KS ci ratio: 2.063081e-01	ci left: 6.661924e-05	ci right 8.213490e-05	k: 360	n:4860000
PYGL   4860000 perm   9712 sec   (500 perm/sec)   p_kst 7.407407e-05   p_cons 8.459245e-01   p_joint 7.407407e-05

Joint ci ratio: 2.060229e-01	ci left: 6.667718e-05	ci right 8.218217e-05	k: 361	n:4870000
Cons ci ratio: 7.581097e-04	ci left: 8.455979e-01	ci right 8.462394e-01	k: 4119625	n:4870000
KS ci ratio: 2.060229e-01	ci left: 6.667718e-05	ci right 8.218217e-05	k: 361	n:4870000
PYGL   4870000 perm   9750 sec   (499 perm/sec)   p_kst 7.412731e-05   p_cons 8.459189e-01   p_joint 7.412731e-05

Joint ci ratio: 2.060230e-01	ci left: 6.654055e-05	ci right 8.201377e-05	k: 361	n:4880000
Cons ci ratio: 7.573344e-04	ci left: 8.455976e-01	ci right 8.462385e-01	k: 4128081	n:4880000
KS ci ratio: 2.060230e-01	ci left: 6.654055e-05	ci right 8.201377e-05	k: 361	n:4880000
PYGL   4880000 perm   9789 sec   (499 perm/sec)   p_kst 7.397541e-05   p_cons 8.459182e-01   p_joint 7.397541e-05

Joint ci ratio: 2.057390e-01	ci left: 6.659843e-05	ci right 8.206108e-05	k: 362	n:4890000
Cons ci ratio: 7.565615e-04	ci left: 8.455973e-01	ci right 8.462375e-01	k: 4136537	n:4890000
KS ci ratio: 2.057390e-01	ci left: 6.659843e-05	ci right 8.206108e-05	k: 362	n:4890000
PYGL   4890000 perm   9826 sec   (498 perm/sec)   p_kst 7.402863e-05   p_cons 8.459176e-01   p_joint 7.402863e-05

Joint ci ratio: 2.051745e-01	ci left: 6.684968e-05	ci right 8.232274e-05	k: 364	n:4900000
Cons ci ratio: 7.557443e-04	ci left: 8.456131e-01	ci right 8.462526e-01	k: 4145072	n:4900000
KS ci ratio: 2.051745e-01	ci left: 6.684968e-05	ci right 8.232274e-05	k: 364	n:4900000
PYGL   4900000 perm   9864 sec   (497 perm/sec)   p_kst 7.428571e-05   p_cons 8.459331e-01   p_joint 7.428571e-05

Joint ci ratio: 2.048940e-01	ci left: 6.690674e-05	ci right 8.236918e-05	k: 365	n:4910000
Cons ci ratio: 7.549638e-04	ci left: 8.456170e-01	ci right 8.462559e-01	k: 4153549	n:4910000
KS ci ratio: 2.048940e-01	ci left: 6.690674e-05	ci right 8.236918e-05	k: 365	n:4910000
PYGL   4910000 perm   9903 sec   (496 perm/sec)   p_kst 7.433809e-05   p_cons 8.459367e-01   p_joint 7.433809e-05

Joint ci ratio: 2.046147e-01	ci left: 6.696358e-05	ci right 8.241542e-05	k: 366	n:4920000
Cons ci ratio: 7.542058e-04	ci left: 8.456140e-01	ci right 8.462522e-01	k: 4161992	n:4920000
KS ci ratio: 2.046147e-01	ci left: 6.696358e-05	ci right 8.241542e-05	k: 366	n:4920000
PYGL   4920000 perm   9941 sec   (495 perm/sec)   p_kst 7.439024e-05   p_cons 8.459333e-01   p_joint 7.439024e-05

Joint ci ratio: 2.046147e-01	ci left: 6.682775e-05	ci right 8.224825e-05	k: 366	n:4930000
Cons ci ratio: 7.534267e-04	ci left: 8.456192e-01	ci right 8.462567e-01	k: 4170475	n:4930000
KS ci ratio: 2.046147e-01	ci left: 6.682775e-05	ci right 8.224825e-05	k: 366	n:4930000
PYGL   4930000 perm   9980 sec   (494 perm/sec)   p_kst 7.423935e-05   p_cons 8.459381e-01   p_joint 7.423935e-05

Joint ci ratio: 2.046147e-01	ci left: 6.669247e-05	ci right 8.208176e-05	k: 366	n:4940000
Cons ci ratio: 7.526984e-04	ci left: 8.456075e-01	ci right 8.462444e-01	k: 4178875	n:4940000
KS ci ratio: 2.046147e-01	ci left: 6.669247e-05	ci right 8.208176e-05	k: 366	n:4940000
PYGL   4940000 perm   10018 sec   (493 perm/sec)   p_kst 7.408907e-05   p_cons 8.459261e-01   p_joint 7.408907e-05

Joint ci ratio: 2.046147e-01	ci left: 6.655774e-05	ci right 8.191594e-05	k: 366	n:4950000
Cons ci ratio: 7.519390e-04	ci left: 8.456073e-01	ci right 8.462436e-01	k: 4187332	n:4950000
KS ci ratio: 2.046147e-01	ci left: 6.655774e-05	ci right 8.191594e-05	k: 366	n:4950000
PYGL   4950000 perm   10057 sec   (492 perm/sec)   p_kst 7.393939e-05   p_cons 8.459257e-01   p_joint 7.393939e-05

Joint ci ratio: 2.043365e-01	ci left: 6.661484e-05	ci right 8.196270e-05	k: 367	n:4960000
Cons ci ratio: 7.511634e-04	ci left: 8.456136e-01	ci right 8.462493e-01	k: 4195821	n:4960000
KS ci ratio: 2.043365e-01	ci left: 6.661484e-05	ci right 8.196270e-05	k: 367	n:4960000
PYGL   4960000 perm   10095 sec   (491 perm/sec)   p_kst 7.399194e-05   p_cons 8.459317e-01   p_joint 7.399194e-05

Joint ci ratio: 2.043365e-01	ci left: 6.648081e-05	ci right 8.179779e-05	k: 367	n:4970000
Cons ci ratio: 7.504225e-04	ci left: 8.456087e-01	ci right 8.462437e-01	k: 4204254	n:4970000
KS ci ratio: 2.043365e-01	ci left: 6.648081e-05	ci right 8.179779e-05	k: 367	n:4970000
PYGL   4970000 perm   10133 sec   (490 perm/sec)   p_kst 7.384306e-05   p_cons 8.459264e-01   p_joint 7.384306e-05

Joint ci ratio: 2.040595e-01	ci left: 6.653785e-05	ci right 8.184459e-05	k: 368	n:4980000
Cons ci ratio: 7.496995e-04	ci left: 8.455983e-01	ci right 8.462326e-01	k: 4212660	n:4980000
KS ci ratio: 2.040595e-01	ci left: 6.653785e-05	ci right 8.184459e-05	k: 368	n:4980000
PYGL   4980000 perm   10171 sec   (490 perm/sec)   p_kst 7.389558e-05   p_cons 8.459157e-01   p_joint 7.389558e-05

Joint ci ratio: 2.040595e-01	ci left: 6.640451e-05	ci right 8.168058e-05	k: 368	n:4990000
Cons ci ratio: 7.489146e-04	ci left: 8.456102e-01	ci right 8.462439e-01	k: 4221177	n:4990000
KS ci ratio: 2.040595e-01	ci left: 6.640451e-05	ci right 8.168058e-05	k: 368	n:4990000
PYGL   4990000 perm   10210 sec   (489 perm/sec)   p_kst 7.374749e-05   p_cons 8.459273e-01   p_joint 7.374749e-05

Joint ci ratio: 2.037835e-01	ci left: 6.646148e-05	ci right 8.172741e-05	k: 369	n:5000000
Cons ci ratio: 7.482062e-04	ci left: 8.455962e-01	ci right 8.462294e-01	k: 4229565	n:5000000
KS ci ratio: 2.037835e-01	ci left: 6.646148e-05	ci right 8.172741e-05	k: 369	n:5000000
PYGL   5000000 perm   10249 sec   (488 perm/sec)   p_kst 7.380000e-05   p_cons 8.459130e-01   p_joint 7.380000e-05

Outputting figure to mutsig2_images.part000000000141/PYGL.3_2624_5000000_7.38e-05_0.84591_7.38e-05.png
                gene_name: PYGL
               theta_stop: 0.20 
                    nperm: 5000000 
                     p_ks: 7.38e-05 
        ci_ks_bounds_left: 6.65e-05 
       ci_ks_bounds_right: 8.17e-05 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.85 
                  p_joint: 7.38e-05 
     ci_joint_bounds_left: 6.65e-05 
    ci_joint_bounds_right: 8.17e-05 

Current progress: 81 percent done.
QRICH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.397447e-02	ci left: 4.329326e-01	ci right 4.525008e-01	k: 4427	n:10000
KS ci ratio: 1.141455e-02	ci left: 9.164670e-01	ci right 9.270857e-01	k: 9219	n:10000
QRICH1   10000 perm   2 sec   (5903 perm/sec)   p_kst 9.219000e-01   p_cons 4.427000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000141/QRICH1.3_2367_10000_0.9219_0.4427_1.png
                gene_name: QRICH1
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
R3HDML
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.030657e-02	ci left: 3.681846e-01	ci right 3.872867e-01	k: 3777	n:10000
Cons ci ratio: 2.108542e-02	ci left: 7.672937e-01	ci right 7.837455e-01	k: 7756	n:10000
KS ci ratio: 7.724115e-02	ci left: 1.968288e-01	ci right 2.127436e-01	k: 2047	n:10000
R3HDML   10000 perm   1 sec   (6770 perm/sec)   p_kst 2.047000e-01   p_cons 7.756000e-01   p_joint 3.777000e-01

Outputting figure to mutsig2_images.part000000000141/R3HDML.3_782_10000_0.2047_0.7756_0.3777.png
                gene_name: R3HDML
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 85 percent done.
PTTG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.710281e-02	ci left: 3.994411e-01	ci right 4.188118e-01	k: 4091	n:10000
KS ci ratio: 4.795085e-02	ci left: 3.908763e-01	ci right 4.101817e-01	k: 4005	n:10000
PTTG1   10000 perm   1 sec   (7272 perm/sec)   p_kst 4.005000e-01   p_cons 4.091000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000141/PTTG1.2_629_10000_0.4005_0.4091_1.png
                gene_name: PTTG1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
PTTG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.208707e-02	ci left: 1.462904e-01	ci right 1.605121e-01	k: 1533	n:10000
Cons ci ratio: 1.429991e-02	ci left: 8.761293e-01	ci right 8.888470e-01	k: 8826	n:10000
KS ci ratio: 1.334730e-01	ci left: 7.407714e-02	ci right 8.476939e-02	k: 793	n:10000
PTTG2   10000 perm   1 sec   (7251 perm/sec)   p_kst 7.930000e-02   p_cons 8.826000e-01   p_joint 1.533000e-01

Joint ci ratio: 2.471825e-02	ci left: 5.500828e-01	ci right 5.639006e-01	k: 11140	n:20000
Cons ci ratio: 1.012508e-02	ci left: 8.777532e-01	ci right 8.867353e-01	k: 17646	n:20000
KS ci ratio: 9.323836e-02	ci left: 7.740166e-02	ci right 8.502062e-02	k: 1623	n:20000
PTTG2   20000 perm   3 sec   (6413 perm/sec)   p_kst 8.115000e-02   p_cons 8.823000e-01   p_joint 5.570000e-01

Outputting figure to mutsig2_images.part000000000141/PTTG2.2_579_20000_0.08115_0.8823_0.557.png
                gene_name: PTTG2
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.081 
        ci_ks_bounds_left: 0.077 
       ci_ks_bounds_right: 0.085 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.56 

Current progress: 90 percent done.
PTX3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.041308e-02	ci left: 6.146223e-01	ci right 6.337054e-01	k: 6242	n:10000
Cons ci ratio: 2.556333e-02	ci left: 6.925243e-01	ci right 7.105582e-01	k: 7016	n:10000
KS ci ratio: 5.358556e-02	ci left: 3.391561e-01	ci right 3.579322e-01	k: 3485	n:10000
PTX3   10000 perm   1 sec   (6832 perm/sec)   p_kst 3.485000e-01   p_cons 7.016000e-01   p_joint 6.242000e-01

Outputting figure to mutsig2_images.part000000000141/PTX3.2_1158_10000_0.3485_0.7016_0.6242.png
                gene_name: PTX3
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 92 percent done.
PUF60
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.071875e-02	ci left: 9.253392e-01	ci right 9.354083e-01	k: 9305	n:10000
KS ci ratio: 1.390683e-01	ci left: 6.846013e-02	ci right 7.878990e-02	k: 735	n:10000
PUF60   10000 perm   2 sec   (6529 perm/sec)   p_kst 7.350000e-02   p_cons 9.305000e-01   p_joint 1

Joint ci ratio: 2.455091e-02	ci left: 5.534378e-01	ci right 5.672447e-01	k: 11207	n:20000
Cons ci ratio: 7.415084e-03	ci left: 9.297025e-01	ci right 9.366709e-01	k: 18665	n:20000
KS ci ratio: 9.939914e-02	ci left: 6.855270e-02	ci right 7.577228e-02	k: 1442	n:20000
PUF60   20000 perm   3 sec   (5839 perm/sec)   p_kst 7.210000e-02   p_cons 9.332500e-01   p_joint 5.603500e-01

Outputting figure to mutsig2_images.part000000000141/PUF60.2_1728_20000_0.0721_0.93325_0.56035.png
                gene_name: PUF60
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.076 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 94 percent done.
PXMP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.779874e-02	ci left: 8.215767e-01	ci right 8.364311e-01	k: 8291	n:10000
Cons ci ratio: 1.390683e-01	ci left: 6.846013e-02	ci right 7.878990e-02	k: 735	n:10000
KS ci ratio: 1.937393e-02	ci left: 7.957771e-01	ci right 8.114456e-01	k: 8037	n:10000
PXMP4   10000 perm   1 sec   (7137 perm/sec)   p_kst 8.037000e-01   p_cons 7.350000e-02   p_joint 8.291000e-01

Joint ci ratio: 2.988518e-02	ci left: 4.554710e-01	ci right 4.693399e-01	k: 9248	n:20000
Cons ci ratio: 1.000734e-01	ci left: 6.767355e-02	ci right 7.485170e-02	k: 1424	n:20000
KS ci ratio: 1.367310e-02	ci left: 7.987325e-01	ci right 8.097789e-01	k: 16086	n:20000
PXMP4   20000 perm   3 sec   (6337 perm/sec)   p_kst 8.043000e-01   p_cons 7.120000e-02   p_joint 4.624000e-01

Joint ci ratio: 1.108470e-02	ci left: 8.020171e-01	ci right 8.109901e-01	k: 24196	n:30000
Cons ci ratio: 8.232350e-02	ci left: 6.736673e-02	ci right 7.318349e-02	k: 2107	n:30000
KS ci ratio: 1.111666e-02	ci left: 8.011093e-01	ci right 8.100981e-01	k: 24169	n:30000
PXMP4   30000 perm   5 sec   (6022 perm/sec)   p_kst 8.056333e-01   p_cons 7.023333e-02   p_joint 8.065333e-01

Outputting figure to mutsig2_images.part000000000141/PXMP4.2_655_30000_0.80563_0.070233_0.80653.png
                gene_name: PXMP4
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.070 
      ci_cons_bounds_left: 0.067 
     ci_cons_bounds_right: 0.073 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 96 percent done.
PYGO2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.867088e-03	ci left: 9.470021e-01	ci right 9.555325e-01	k: 9514	n:10000
KS ci ratio: 3.174386e-02	ci left: 5.942350e-01	ci right 6.135045e-01	k: 6039	n:10000
PYGO2   10000 perm   1 sec   (6800 perm/sec)   p_kst 6.039000e-01   p_cons 9.514000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000141/PYGO2.2_1233_10000_0.6039_0.9514_1.png
                gene_name: PYGO2
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
QRSL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.217319e-02	ci left: 7.490766e-01	ci right 7.659732e-01	k: 7576	n:10000
Cons ci ratio: 5.161556e-02	ci left: 3.562506e-01	ci right 3.752277e-01	k: 3657	n:10000
KS ci ratio: 7.118065e-02	ci left: 2.243482e-01	ci right 2.410078e-01	k: 2326	n:10000
QRSL1   10000 perm   2 sec   (6580 perm/sec)   p_kst 2.326000e-01   p_cons 3.657000e-01   p_joint 7.576000e-01

Outputting figure to mutsig2_images.part000000000141/QRSL1.2_1631_10000_0.2326_0.3657_0.7576.png
                gene_name: QRSL1
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000141
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 141 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1710>
Subject: Job 8004468: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1710>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000142> was used as the working directory.
Started at Sun Nov 11 15:15:07 2012
Results reported at Sun Nov 11 15:22:23 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000142.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000142.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 142  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000142.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    471.88 sec.
    Max Memory :      4664 MB
    Max Swap   :      7051 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
142
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 142
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 142: processing genes 12757 - 12847
Calculating significance of each gene.
Using projection method.
12757	RAB11B	4.597680e-01
12758	RAB11FIP1	1
12759	RAB11FIP2	6.889133e-01
12760	RAB11FIP3	8.321147e-01
12761	RAB11FIP4	1
12762	RAB11FIP5	8.080305e-01
12763	RAB12	1
12764	RAB13	1
12765	RAB14	3.299786e-01
12766	RAB15	5.088695e-01
12767	RAB17	4.850714e-01
12768	RAB18	1
12769	RAB19	1.935224e-01
12770	RAB1A	1
12771	RAB1B	1
12772	RAB20	4.251578e-01
12773	RAB21	1
12774	RAB22A	1
12775	RAB23	1
12776	RAB24	1
12777	RAB25	1
12778	RAB26	1.522884e-01
12779	RAB27A	1
12780	RAB27B	6.290396e-01
12781	RAB28	1
12782	RAB2A	3.334293e-01
12783	RAB2B	6.161241e-01
12784	RAB30	3.515120e-01
12785	RAB31	1
12786	RAB32	8.154393e-02
12787	RAB33A	6.421862e-01
12788	RAB33B	1
12789	RAB34	1.079925e-01
12790	RAB35	1
12791	RAB36	6.361322e-01
12792	RAB37	1
12793	RAB38	2.371455e-01
12794	RAB39	1
12795	RAB39B	2.588087e-01
12796	RAB3A	1
12797	RAB3B	1.176319e-01
12798	RAB3C	2.894279e-01
12799	RAB3D	4.448577e-01
12800	RAB3GAP1	3.164743e-01
12801	RAB3GAP2	7.833359e-01
12802	RAB3IL1	1.652543e-01
12803	RAB3IP	2.840297e-01
12804	RAB40A	2.258422e-01
12805	RAB40AL	3.568932e-01
12806	RAB40B	1
12807	RAB40C	1
12808	RAB41	1.355597e-01
12809	RAB42	1
12810	RAB43	1
12811	RAB4A	2.396098e-02
12812	RAB4B	6.488338e-01
12813	RAB5A	1
12814	RAB5B	6.051986e-01
12815	RAB5C	1
12816	RAB6A	1
12817	RAB6B	2.686083e-01
12818	RAB6C	1
12819	RAB7A	2.463331e-01
12820	RAB7L1	1
12821	RAB8A	1
12822	RAB8B	1
12823	RAB9A	1
12824	RAB9B	1
12825	RABAC1	1
12826	RABEP1	1
12827	RABEP2	5.731609e-01
12828	RABEPK	6.918687e-01
12829	RABGAP1	9.470233e-01
12830	RABGAP1L	1.799509e-01
12831	RABGEF1	1
12832	RABGGTA	8.901256e-01
12833	RABGGTB	3.890793e-01
12834	RABIF	9.124867e-02
12835	RABL2A	6.277707e-01
12836	RABL2B	1
12837	RABL3	5.523210e-01
12838	RABL5	1
12839	RAC1	3.512175e-01
12840	RAC2	1
12841	RAC3	1
12842	RACGAP1	3.605929e-01
12843	RAD1	2.630804e-01
12844	RAD17	6.772395e-01
12845	RAD18	8.308375e-01
12846	RAD21	6.362272e-01
12847	RAD23A	8.234073e-01
Done

Running MutSig 2:
Scatter job 142: processing genes 12757 - 12847
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
RABGAP1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.299881e-02	ci left: 4.440068e-01	ci right 4.636202e-01	k: 4538	n:10000
Cons ci ratio: 5.177165e-02	ci left: 3.548587e-01	ci right 3.738204e-01	k: 3643	n:10000
KS ci ratio: 6.473460e-02	ci left: 2.595354e-01	ci right 2.769998e-01	k: 2682	n:10000
RABGAP1L   10000 perm   2 sec   (4759 perm/sec)   p_kst 2.682000e-01   p_cons 3.643000e-01   p_joint 4.538000e-01

Outputting figure to mutsig2_images.part000000000142/RABGAP1L.6_2643_10000_0.2682_0.3643_0.4538.png
                gene_name: RABGAP1L
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 3 percent done.
RAB3GAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.998584e-02	ci left: 2.303719e-01	ci right 2.471805e-01	k: 2387	n:10000
Cons ci ratio: 3.023834e-02	ci left: 6.173352e-01	ci right 6.363908e-01	k: 6269	n:10000
KS ci ratio: 9.390156e-02	ci left: 1.413875e-01	ci right 1.554180e-01	k: 1483	n:10000
RAB3GAP1   10000 perm   2 sec   (4875 perm/sec)   p_kst 1.483000e-01   p_cons 6.269000e-01   p_joint 2.387000e-01

Outputting figure to mutsig2_images.part000000000142/RAB3GAP1.5_3067_10000_0.1483_0.6269_0.2387.png
                gene_name: RAB3GAP1
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 7 percent done.
RAB3GAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.124856e-02	ci left: 6.017652e-01	ci right 6.209699e-01	k: 6114	n:10000
Cons ci ratio: 4.330361e-02	ci left: 4.405144e-01	ci right 4.601146e-01	k: 4503	n:10000
KS ci ratio: 5.094380e-02	ci left: 3.623163e-01	ci right 3.813585e-01	k: 3718	n:10000
RAB3GAP2   10000 perm   2 sec   (4886 perm/sec)   p_kst 3.718000e-01   p_cons 4.503000e-01   p_joint 6.114000e-01

Outputting figure to mutsig2_images.part000000000142/RAB3GAP2.4_4322_10000_0.3718_0.4503_0.6114.png
                gene_name: RAB3GAP2
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 10 percent done.
RAB32
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.657893e-02	ci left: 8.411177e-01	ci right 8.552788e-01	k: 8483	n:10000
Cons ci ratio: 4.364630e-02	ci left: 4.366235e-01	ci right 4.562078e-01	k: 4464	n:10000
KS ci ratio: 2.720472e-02	ci left: 6.656194e-01	ci right 6.840787e-01	k: 6749	n:10000
RAB32   10000 perm   1 sec   (7239 perm/sec)   p_kst 6.749000e-01   p_cons 4.464000e-01   p_joint 8.483000e-01

Outputting figure to mutsig2_images.part000000000142/RAB32.3_690_10000_0.6749_0.4464_0.8483.png
                gene_name: RAB32
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 14 percent done.
RAB34
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.684082e-02	ci left: 4.021307e-01	ci right 4.215207e-01	k: 4118	n:10000
Cons ci ratio: 7.470260e-02	ci left: 2.077708e-01	ci right 2.239950e-01	k: 2158	n:10000
KS ci ratio: 4.743559e-02	ci left: 3.960547e-01	ci right 4.154003e-01	k: 4057	n:10000
RAB34   10000 perm   2 sec   (6368 perm/sec)   p_kst 4.057000e-01   p_cons 2.158000e-01   p_joint 4.118000e-01

Outputting figure to mutsig2_images.part000000000142/RAB34.3_1062_10000_0.4057_0.2158_0.4118.png
                gene_name: RAB34
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 17 percent done.
RAB3IP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.955534e-02	ci left: 3.752485e-01	ci right 3.944186e-01	k: 3848	n:10000
Cons ci ratio: 2.380899e-02	ci left: 7.216873e-01	ci right 7.391782e-01	k: 7305	n:10000
KS ci ratio: 5.688161e-02	ci left: 3.127459e-01	ci right 3.311579e-01	k: 3219	n:10000
RAB3IP   10000 perm   2 sec   (6268 perm/sec)   p_kst 3.219000e-01   p_cons 7.305000e-01   p_joint 3.848000e-01

Outputting figure to mutsig2_images.part000000000142/RAB3IP.3_1475_10000_0.3219_0.7305_0.3848.png
                gene_name: RAB3IP
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.39 

Current progress: 21 percent done.
RAB43
Processing conservation and coverage...
Processing mutations... 
Skipping 3 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 24 percent done.
RAB4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.424714e-03	ci left: 9.784504e-01	ci right 9.838641e-01	k: 9813	n:10000
Cons ci ratio: 2.637780e-02	ci left: 6.791178e-01	ci right 6.973724e-01	k: 6883	n:10000
KS ci ratio: 1.906652e-02	ci left: 8.008515e-01	ci right 8.163683e-01	k: 8087	n:10000
RAB4A   10000 perm   2 sec   (6656 perm/sec)   p_kst 8.087000e-01   p_cons 6.883000e-01   p_joint 9.813000e-01

Outputting figure to mutsig2_images.part000000000142/RAB4A.3_685_10000_0.8087_0.6883_0.9813.png
                gene_name: RAB4A
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 28 percent done.
RACGAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.256183e-01	ci left: 2.598777e-02	ci right 3.269015e-02	k: 292	n:10000
Cons ci ratio: 5.701213e-02	ci left: 3.117537e-01	ci right 3.301507e-01	k: 3209	n:10000
KS ci ratio: 5.045244e-01	ci left: 4.494298e-03	ci right 7.604055e-03	k: 59	n:10000
RACGAP1   10000 perm   2 sec   (5970 perm/sec)   p_kst 5.900000e-03   p_cons 3.209000e-01   p_joint 2.920000e-02

Joint ci ratio: 2.876468e-01	ci left: 7.877125e-03	ci right 1.056846e-02	k: 183	n:20000
Cons ci ratio: 4.081847e-02	ci left: 3.091114e-01	ci right 3.220422e-01	k: 6311	n:20000
KS ci ratio: 3.644804e-01	ci left: 4.704030e-03	ci right 6.843509e-03	k: 114	n:20000
RACGAP1   20000 perm   4 sec   (5344 perm/sec)   p_kst 5.700000e-03   p_cons 3.155500e-01   p_joint 9.150000e-03

Joint ci ratio: 2.989094e-01	ci left: 4.848747e-03	ci right 6.582421e-03	k: 170	n:30000
Cons ci ratio: 3.331788e-02	ci left: 3.104418e-01	ci right 3.209939e-01	k: 9471	n:30000
KS ci ratio: 3.110310e-01	ci left: 4.448416e-03	ci right 6.116268e-03	k: 157	n:30000
RACGAP1   30000 perm   6 sec   (5102 perm/sec)   p_kst 5.233333e-03   p_cons 3.157000e-01   p_joint 5.666667e-03

Joint ci ratio: 2.451775e-01	ci left: 5.571602e-03	ci right 7.151349e-03	k: 253	n:40000
Cons ci ratio: 2.882967e-02	ci left: 3.115196e-01	ci right 3.206571e-01	k: 12643	n:40000
KS ci ratio: 2.685090e-01	ci left: 4.588736e-03	ci right 6.034512e-03	k: 211	n:40000
RACGAP1   40000 perm   8 sec   (4945 perm/sec)   p_kst 5.275000e-03   p_cons 3.160750e-01   p_joint 6.325000e-03

Joint ci ratio: 2.291225e-01	ci left: 5.153222e-03	ci right 6.505122e-03	k: 290	n:50000
Cons ci ratio: 2.573485e-02	ci left: 3.128624e-01	ci right 3.210389e-01	k: 15847	n:50000
KS ci ratio: 2.401623e-01	ci left: 4.663632e-03	ci right 5.954827e-03	k: 264	n:50000
RACGAP1   50000 perm   10 sec   (4776 perm/sec)   p_kst 5.280000e-03   p_cons 3.169400e-01   p_joint 5.800000e-03

Joint ci ratio: 2.579791e-01	ci left: 3.339081e-03	ci right 4.343184e-03	k: 229	n:60000
Cons ci ratio: 2.343179e-02	ci left: 3.143407e-01	ci right 3.218102e-01	k: 19084	n:60000
KS ci ratio: 2.235175e-01	ci left: 4.530011e-03	ci right 5.685323e-03	k: 305	n:60000
RACGAP1   60000 perm   13 sec   (4673 perm/sec)   p_kst 5.083333e-03   p_cons 3.180667e-01   p_joint 3.816667e-03

Joint ci ratio: 2.143016e-01	ci left: 4.247370e-03	ci right 5.280055e-03	k: 332	n:70000
Cons ci ratio: 2.167423e-02	ci left: 3.150064e-01	ci right 3.219230e-01	k: 22292	n:70000
KS ci ratio: 2.084092e-01	ci left: 4.504494e-03	ci right 5.565744e-03	k: 351	n:70000
RACGAP1   70000 perm   15 sec   (4576 perm/sec)   p_kst 5.014286e-03   p_cons 3.184571e-01   p_joint 4.742857e-03

Joint ci ratio: 1.957543e-01	ci left: 4.499226e-03	ci right 5.487197e-03	k: 398	n:80000
Cons ci ratio: 2.030052e-02	ci left: 3.146736e-01	ci right 3.211396e-01	k: 25432	n:80000
KS ci ratio: 2.033180e-01	ci left: 4.154756e-03	ci right 5.106717e-03	k: 369	n:80000
RACGAP1   80000 perm   18 sec   (4489 perm/sec)   p_kst 4.612500e-03   p_cons 3.179000e-01   p_joint 4.975000e-03

Joint ci ratio: 1.535553e-01	ci left: 6.636638e-03	ci right 7.751036e-03	k: 646	n:90000
Cons ci ratio: 1.913761e-02	ci left: 3.149024e-01	ci right 3.209982e-01	k: 28615	n:90000
KS ci ratio: 1.915169e-01	ci left: 4.189551e-03	ci right 5.087281e-03	k: 416	n:90000
RACGAP1   90000 perm   20 sec   (4410 perm/sec)   p_kst 4.622222e-03   p_cons 3.179444e-01   p_joint 7.177778e-03

Joint ci ratio: 1.255127e-01	ci left: 9.053348e-03	ci right 1.027535e-02	k: 965	n:100000
Cons ci ratio: 1.818301e-02	ci left: 3.144057e-01	ci right 3.201849e-01	k: 31729	n:100000
KS ci ratio: 1.811660e-01	ci left: 4.237761e-03	ci right 5.091361e-03	k: 465	n:100000
RACGAP1   100000 perm   23 sec   (4334 perm/sec)   p_kst 4.650000e-03   p_cons 3.172900e-01   p_joint 9.650000e-03

Joint ci ratio: 1.346541e-01	ci left: 7.130398e-03	ci right 8.168541e-03	k: 840	n:110000
Cons ci ratio: 1.734993e-02	ci left: 3.142143e-01	ci right 3.197226e-01	k: 34866	n:110000
KS ci ratio: 1.728367e-01	ci left: 4.252174e-03	ci right 5.065191e-03	k: 511	n:110000
RACGAP1   110000 perm   26 sec   (4254 perm/sec)   p_kst 4.645455e-03   p_cons 3.169636e-01   p_joint 7.636364e-03

Joint ci ratio: 1.341363e-01	ci left: 6.592446e-03	ci right 7.548275e-03	k: 847	n:120000
Cons ci ratio: 1.662272e-02	ci left: 3.140350e-01	ci right 3.193072e-01	k: 38000	n:120000
KS ci ratio: 1.667652e-01	ci left: 4.201028e-03	ci right 4.973214e-03	k: 549	n:120000
RACGAP1   120000 perm   29 sec   (4179 perm/sec)   p_kst 4.575000e-03   p_cons 3.166667e-01   p_joint 7.058333e-03

Joint ci ratio: 1.326080e-01	ci left: 6.233970e-03	ci right 7.126710e-03	k: 867	n:130000
Cons ci ratio: 1.597450e-02	ci left: 3.140334e-01	ci right 3.190979e-01	k: 41153	n:130000
KS ci ratio: 1.602003e-01	ci left: 4.217248e-03	ci right 4.958963e-03	k: 595	n:130000
RACGAP1   130000 perm   32 sec   (4107 perm/sec)   p_kst 4.576923e-03   p_cons 3.165615e-01   p_joint 6.669231e-03

Joint ci ratio: 1.453079e-01	ci left: 4.795532e-03	ci right 5.553756e-03	k: 723	n:140000
Cons ci ratio: 1.539969e-02	ci left: 3.139498e-01	ci right 3.188292e-01	k: 44294	n:140000
KS ci ratio: 1.524574e-01	ci left: 4.341578e-03	ci right 5.064886e-03	k: 657	n:140000
RACGAP1   140000 perm   35 sec   (4040 perm/sec)   p_kst 4.692857e-03   p_cons 3.163857e-01   p_joint 5.164286e-03

Joint ci ratio: 1.389225e-01	ci left: 4.913070e-03	ci right 5.652917e-03	k: 791	n:150000
Cons ci ratio: 1.487727e-02	ci left: 3.140400e-01	ci right 3.187537e-01	k: 47459	n:150000
KS ci ratio: 1.450315e-01	ci left: 4.495052e-03	ci right 5.204296e-03	k: 726	n:150000
RACGAP1   150000 perm   38 sec   (3974 perm/sec)   p_kst 4.840000e-03   p_cons 3.163933e-01   p_joint 5.273333e-03

Joint ci ratio: 1.334669e-01	ci left: 5.004467e-03	ci right 5.726135e-03	k: 857	n:160000
Cons ci ratio: 1.441797e-02	ci left: 3.137222e-01	ci right 3.182845e-01	k: 50560	n:160000
KS ci ratio: 1.393884e-01	ci left: 4.575785e-03	ci right 5.267342e-03	k: 786	n:160000
RACGAP1   160000 perm   41 sec   (3912 perm/sec)   p_kst 4.912500e-03   p_cons 3.160000e-01   p_joint 5.356250e-03

Joint ci ratio: 1.272300e-01	ci left: 5.199512e-03	ci right 5.911627e-03	k: 943	n:170000
Cons ci ratio: 1.397799e-02	ci left: 3.140838e-01	ci right 3.185107e-01	k: 53770	n:170000
KS ci ratio: 1.345161e-01	ci left: 4.636120e-03	ci right 5.310344e-03	k: 844	n:170000
RACGAP1   170000 perm   44 sec   (3854 perm/sec)   p_kst 4.964706e-03   p_cons 3.162941e-01   p_joint 5.547059e-03

Joint ci ratio: 1.079934e-01	ci left: 6.874064e-03	ci right 7.664152e-03	k: 1307	n:180000
Cons ci ratio: 1.358224e-02	ci left: 3.142074e-01	ci right 3.185097e-01	k: 56944	n:180000
KS ci ratio: 1.299048e-01	ci left: 4.706250e-03	ci right 5.365402e-03	k: 905	n:180000
RACGAP1   180000 perm   47 sec   (3796 perm/sec)   p_kst 5.027778e-03   p_cons 3.163556e-01   p_joint 7.261111e-03

Joint ci ratio: 1.057190e-01	ci left: 6.804240e-03	ci right 7.568806e-03	k: 1364	n:190000
Cons ci ratio: 1.321414e-02	ci left: 3.144561e-01	ci right 3.186442e-01	k: 60144	n:190000
KS ci ratio: 1.262632e-01	ci left: 4.728567e-03	ci right 5.370888e-03	k: 958	n:190000
RACGAP1   190000 perm   51 sec   (3740 perm/sec)   p_kst 5.042105e-03   p_cons 3.165474e-01   p_joint 7.178947e-03

Joint ci ratio: 1.084511e-01	ci left: 6.137885e-03	ci right 6.846533e-03	k: 1297	n:200000
Cons ci ratio: 1.287620e-02	ci left: 3.146215e-01	ci right 3.187038e-01	k: 63332	n:200000
KS ci ratio: 1.230339e-01	ci left: 4.739189e-03	ci right 5.365289e-03	k: 1009	n:200000
RACGAP1   200000 perm   54 sec   (3687 perm/sec)   p_kst 5.045000e-03   p_cons 3.166600e-01   p_joint 6.485000e-03

Joint ci ratio: 1.083420e-01	ci left: 5.859457e-03	ci right 6.535235e-03	k: 1300	n:210000
Cons ci ratio: 1.256639e-02	ci left: 3.146535e-01	ci right 3.186373e-01	k: 66495	n:210000
KS ci ratio: 1.206707e-01	ci left: 4.698177e-03	ci right 5.306086e-03	k: 1049	n:210000
RACGAP1   210000 perm   58 sec   (3635 perm/sec)   p_kst 4.995238e-03   p_cons 3.166429e-01   p_joint 6.190476e-03

Joint ci ratio: 1.095496e-01	ci left: 5.469253e-03	ci right 6.107510e-03	k: 1272	n:220000
Cons ci ratio: 1.227586e-02	ci left: 3.147563e-01	ci right 3.186485e-01	k: 69674	n:220000
KS ci ratio: 1.172023e-01	ci left: 4.762478e-03	ci right 5.359768e-03	k: 1112	n:220000
RACGAP1   220000 perm   61 sec   (3585 perm/sec)   p_kst 5.054545e-03   p_cons 3.167000e-01   p_joint 5.781818e-03

Joint ci ratio: 1.105280e-01	ci left: 5.138391e-03	ci right 5.743740e-03	k: 1250	n:230000
Cons ci ratio: 1.200229e-02	ci left: 3.149336e-01	ci right 3.187406e-01	k: 72872	n:230000
KS ci ratio: 1.149039e-01	ci left: 4.745384e-03	ci right 5.328067e-03	k: 1157	n:230000
RACGAP1   230000 perm   65 sec   (3535 perm/sec)   p_kst 5.030435e-03   p_cons 3.168348e-01   p_joint 5.434783e-03

Joint ci ratio: 1.080507e-01	ci left: 5.159355e-03	ci right 5.752684e-03	k: 1308	n:240000
Cons ci ratio: 1.175393e-02	ci left: 3.148141e-01	ci right 3.185404e-01	k: 76002	n:240000
KS ci ratio: 1.125946e-01	ci left: 4.741969e-03	ci right 5.311753e-03	k: 1205	n:240000
RACGAP1   240000 perm   69 sec   (3487 perm/sec)   p_kst 5.020833e-03   p_cons 3.166750e-01   p_joint 5.450000e-03

Joint ci ratio: 1.048497e-01	ci left: 5.268371e-03	ci right 5.855181e-03	k: 1389	n:250000
Cons ci ratio: 1.151547e-02	ci left: 3.148886e-01	ci right 3.185396e-01	k: 79178	n:250000
KS ci ratio: 1.097613e-01	ci left: 4.797290e-03	ci right 5.358278e-03	k: 1268	n:250000
RACGAP1   250000 perm   73 sec   (3440 perm/sec)   p_kst 5.072000e-03   p_cons 3.167120e-01   p_joint 5.556000e-03

Joint ci ratio: 1.117356e-01	ci left: 4.448191e-03	ci right 4.978327e-03	k: 1224	n:260000
Cons ci ratio: 1.129206e-02	ci left: 3.149159e-01	ci right 3.184959e-01	k: 82343	n:260000
KS ci ratio: 1.077431e-01	ci left: 4.792372e-03	ci right 5.341827e-03	k: 1316	n:260000
RACGAP1   260000 perm   77 sec   (3396 perm/sec)   p_kst 5.061538e-03   p_cons 3.167038e-01   p_joint 4.707692e-03

Joint ci ratio: 7.664039e-02	ci left: 9.228356e-03	ci right 9.967413e-03	k: 2590	n:270000
Cons ci ratio: 1.107577e-02	ci left: 3.151525e-01	ci right 3.186662e-01	k: 85565	n:270000
KS ci ratio: 9.528297e-02	ci left: 5.932688e-03	ci right 6.529838e-03	k: 1681	n:270000
RACGAP1   270000 perm   81 sec   (3354 perm/sec)   p_kst 6.225926e-03   p_cons 3.169074e-01   p_joint 9.592593e-03

Outputting figure to mutsig2_images.part000000000142/RACGAP1.3_1963_270000_0.0062259_0.31691_0.0095926.png
                gene_name: RACGAP1
               theta_stop: 0.095 
                    nperm: 270000 
                     p_ks: 0.0062 
        ci_ks_bounds_left: 0.0059 
       ci_ks_bounds_right: 0.0065 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.0096 
     ci_joint_bounds_left: 0.0092 
    ci_joint_bounds_right: 0.0100 

Current progress: 31 percent done.
RAB11FIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.007874e-02	ci left: 2.895409e-01	ci right 3.075765e-01	k: 2985	n:10000
Cons ci ratio: 3.280251e-02	ci left: 5.783790e-01	ci right 5.977697e-01	k: 5881	n:10000
KS ci ratio: 9.298371e-02	ci left: 1.438386e-01	ci right 1.579654e-01	k: 1508	n:10000
RAB11FIP1   10000 perm   2 sec   (5484 perm/sec)   p_kst 1.508000e-01   p_cons 5.881000e-01   p_joint 2.985000e-01

Outputting figure to mutsig2_images.part000000000142/RAB11FIP1.2_3876_10000_0.1508_0.5881_0.2985.png
                gene_name: RAB11FIP1
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 34 percent done.
RAB19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.238824e-02	ci left: 4.510928e-01	ci right 4.707300e-01	k: 4609	n:10000
KS ci ratio: 2.693860e-02	ci left: 6.699500e-01	ci right 6.883455e-01	k: 6792	n:10000
RAB19   10000 perm   1 sec   (6934 perm/sec)   p_kst 6.792000e-01   p_cons 4.609000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000142/RAB19.2_666_10000_0.6792_0.4609_1.png
                gene_name: RAB19
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 38 percent done.
RAB26
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.399040e-02	ci left: 7.186579e-01	ci right 7.362094e-01	k: 7275	n:10000
Cons ci ratio: 3.572608e-02	ci left: 5.363798e-01	ci right 5.559932e-01	k: 5462	n:10000
KS ci ratio: 3.460899e-02	ci left: 5.521087e-01	ci right 5.716552e-01	k: 5619	n:10000
RAB26   10000 perm   1 sec   (7257 perm/sec)   p_kst 5.619000e-01   p_cons 5.462000e-01   p_joint 7.275000e-01

Outputting figure to mutsig2_images.part000000000142/RAB26.2_807_10000_0.5619_0.5462_0.7275.png
                gene_name: RAB26
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 41 percent done.
RAB38
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.165041e-02	ci left: 9.133766e-01	ci right 9.241779e-01	k: 9189	n:10000
KS ci ratio: 6.428240e-03	ci left: 9.705838e-01	ci right 9.769362e-01	k: 9739	n:10000
RAB38   10000 perm   1 sec   (7075 perm/sec)   p_kst 9.739000e-01   p_cons 9.189000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000142/RAB38.2_648_10000_0.9739_0.9189_1.png
                gene_name: RAB38
               theta_stop: 0.012 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 45 percent done.
RAB39B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.123029e-01	ci left: 1.024689e-01	ci right 1.147601e-01	k: 1085	n:10000
Cons ci ratio: 1.627940e-01	ci left: 5.032338e-02	ci right 5.933816e-02	k: 547	n:10000
KS ci ratio: 5.092200e-02	ci left: 3.625152e-01	ci right 3.815594e-01	k: 3720	n:10000
RAB39B   10000 perm   1 sec   (7062 perm/sec)   p_kst 3.720000e-01   p_cons 5.470000e-02   p_joint 1.085000e-01

Joint ci ratio: 9.126482e-02	ci left: 8.058298e-02	ci right 8.833833e-02	k: 1688	n:20000
Cons ci ratio: 1.137492e-01	ci left: 5.285323e-02	ci right 5.927660e-02	k: 1120	n:20000
KS ci ratio: 3.575802e-02	ci left: 3.685830e-01	ci right 3.820533e-01	k: 7506	n:20000
RAB39B   20000 perm   3 sec   (6176 perm/sec)   p_kst 3.753000e-01   p_cons 5.600000e-02   p_joint 8.440000e-02

Joint ci ratio: 7.848539e-02	ci left: 7.374584e-02	ci right 7.980309e-02	k: 2302	n:30000
Cons ci ratio: 9.219593e-02	ci left: 5.420718e-02	ci right 5.947905e-02	k: 1704	n:30000
KS ci ratio: 2.923260e-02	ci left: 3.692515e-01	ci right 3.802394e-01	k: 11242	n:30000
RAB39B   30000 perm   5 sec   (5871 perm/sec)   p_kst 3.747333e-01   p_cons 5.680000e-02   p_joint 7.673333e-02

Outputting figure to mutsig2_images.part000000000142/RAB39B.2_650_30000_0.37473_0.0568_0.076733.png
                gene_name: RAB39B
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.057 
      ci_cons_bounds_left: 0.054 
     ci_cons_bounds_right: 0.059 
                  p_joint: 0.077 
     ci_joint_bounds_left: 0.074 
    ci_joint_bounds_right: 0.080 

Current progress: 48 percent done.
RAB3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.772737e-01	ci left: 5.108009e-03	ci right 8.389267e-03	k: 66	n:10000
Cons ci ratio: 4.772737e-01	ci left: 5.108009e-03	ci right 8.389267e-03	k: 66	n:10000
KS ci ratio: 2.863623e-02	ci left: 6.425708e-01	ci right 6.613406e-01	k: 6520	n:10000
RAB3B   10000 perm   1 sec   (7040 perm/sec)   p_kst 6.520000e-01   p_cons 6.600000e-03   p_joint 6.600000e-03

Joint ci ratio: 3.538073e-01	ci left: 5.022594e-03	ci right 7.224712e-03	k: 121	n:20000
Cons ci ratio: 3.538073e-01	ci left: 5.022594e-03	ci right 7.224712e-03	k: 121	n:20000
KS ci ratio: 2.042402e-02	ci left: 6.414353e-01	ci right 6.547216e-01	k: 12962	n:20000
RAB3B   20000 perm   3 sec   (6208 perm/sec)   p_kst 6.481000e-01   p_cons 6.050000e-03   p_joint 6.050000e-03

Joint ci ratio: 2.849935e-01	ci left: 5.374137e-03	ci right 7.190140e-03	k: 187	n:30000
Cons ci ratio: 2.849935e-01	ci left: 5.374137e-03	ci right 7.190140e-03	k: 187	n:30000
KS ci ratio: 1.654012e-02	ci left: 6.464114e-01	ci right 6.572258e-01	k: 19555	n:30000
RAB3B   30000 perm   5 sec   (5893 perm/sec)   p_kst 6.518333e-01   p_cons 6.233333e-03   p_joint 6.233333e-03

Joint ci ratio: 2.491573e-01	ci left: 5.383925e-03	ci right 6.939080e-03	k: 245	n:40000
Cons ci ratio: 2.491573e-01	ci left: 5.383925e-03	ci right 6.939080e-03	k: 245	n:40000
KS ci ratio: 1.431112e-02	ci left: 6.475594e-01	ci right 6.569185e-01	k: 26090	n:40000
RAB3B   40000 perm   7 sec   (5686 perm/sec)   p_kst 6.522500e-01   p_cons 6.125000e-03   p_joint 6.125000e-03

Joint ci ratio: 2.215882e-01	ci left: 5.530762e-03	ci right 6.927498e-03	k: 310	n:50000
Cons ci ratio: 2.215882e-01	ci left: 5.530762e-03	ci right 6.927498e-03	k: 310	n:50000
KS ci ratio: 1.284125e-02	ci left: 6.466028e-01	ci right 6.549797e-01	k: 32540	n:50000
RAB3B   50000 perm   9 sec   (5509 perm/sec)   p_kst 6.508000e-01   p_cons 6.200000e-03   p_joint 6.200000e-03

Joint ci ratio: 2.023364e-01	ci left: 5.587563e-03	ci right 6.860909e-03	k: 372	n:60000
Cons ci ratio: 2.023364e-01	ci left: 5.587563e-03	ci right 6.860909e-03	k: 372	n:60000
KS ci ratio: 1.175125e-02	ci left: 6.458506e-01	ci right 6.535016e-01	k: 38981	n:60000
RAB3B   60000 perm   11 sec   (5362 perm/sec)   p_kst 6.496833e-01   p_cons 6.200000e-03   p_joint 6.200000e-03

Joint ci ratio: 1.865025e-01	ci left: 5.686392e-03	ci right 6.869381e-03	k: 438	n:70000
Cons ci ratio: 1.865025e-01	ci left: 5.686392e-03	ci right 6.869381e-03	k: 438	n:70000
KS ci ratio: 1.087507e-02	ci left: 6.463245e-01	ci right 6.534060e-01	k: 45491	n:70000
RAB3B   70000 perm   13 sec   (5230 perm/sec)   p_kst 6.498714e-01   p_cons 6.257143e-03   p_joint 6.257143e-03

Joint ci ratio: 1.720099e-01	ci left: 5.895018e-03	ci right 7.016225e-03	k: 515	n:80000
Cons ci ratio: 1.720099e-01	ci left: 5.895018e-03	ci right 7.016225e-03	k: 515	n:80000
KS ci ratio: 1.017011e-02	ci left: 6.466707e-01	ci right 6.532935e-01	k: 51999	n:80000
RAB3B   80000 perm   16 sec   (5107 perm/sec)   p_kst 6.499875e-01   p_cons 6.437500e-03   p_joint 6.437500e-03

Joint ci ratio: 1.630942e-01	ci left: 5.857440e-03	ci right 6.908090e-03	k: 573	n:90000
Cons ci ratio: 1.630942e-01	ci left: 5.857440e-03	ci right 6.908090e-03	k: 573	n:90000
KS ci ratio: 9.586818e-03	ci left: 6.469403e-01	ci right 6.531834e-01	k: 58506	n:90000
RAB3B   90000 perm   18 sec   (4993 perm/sec)   p_kst 6.500667e-01   p_cons 6.366667e-03   p_joint 6.366667e-03

Joint ci ratio: 1.549423e-01	ci left: 5.867037e-03	ci right 6.861921e-03	k: 635	n:100000
Cons ci ratio: 1.549423e-01	ci left: 5.867037e-03	ci right 6.861921e-03	k: 635	n:100000
KS ci ratio: 9.097594e-03	ci left: 6.469643e-01	ci right 6.528870e-01	k: 64993	n:100000
RAB3B   100000 perm   21 sec   (4815 perm/sec)   p_kst 6.499300e-01   p_cons 6.350000e-03   p_joint 6.350000e-03

Joint ci ratio: 1.480088e-01	ci left: 5.867203e-03	ci right 6.813653e-03	k: 696	n:110000
Cons ci ratio: 1.480088e-01	ci left: 5.867203e-03	ci right 6.813653e-03	k: 696	n:110000
KS ci ratio: 8.669596e-03	ci left: 6.473459e-01	ci right 6.529916e-01	k: 71519	n:110000
RAB3B   110000 perm   23 sec   (4695 perm/sec)   p_kst 6.501727e-01   p_cons 6.327273e-03   p_joint 6.327273e-03

Joint ci ratio: 1.420241e-01	ci left: 5.860130e-03	ci right 6.763977e-03	k: 756	n:120000
Cons ci ratio: 1.420241e-01	ci left: 5.860130e-03	ci right 6.763977e-03	k: 756	n:120000
KS ci ratio: 8.292869e-03	ci left: 6.478863e-01	ci right 6.532898e-01	k: 78071	n:120000
RAB3B   120000 perm   26 sec   (4589 perm/sec)   p_kst 6.505917e-01   p_cons 6.300000e-03   p_joint 6.300000e-03

Joint ci ratio: 1.367956e-01	ci left: 5.847367e-03	ci right 6.713339e-03	k: 815	n:130000
Cons ci ratio: 1.367956e-01	ci left: 5.847367e-03	ci right 6.713339e-03	k: 815	n:130000
KS ci ratio: 7.970490e-03	ci left: 6.478238e-01	ci right 6.530156e-01	k: 84555	n:130000
RAB3B   130000 perm   29 sec   (4514 perm/sec)   p_kst 6.504231e-01   p_cons 6.269231e-03   p_joint 6.269231e-03

Joint ci ratio: 1.315764e-01	ci left: 5.885311e-03	ci right 6.721048e-03	k: 881	n:140000
Cons ci ratio: 1.315764e-01	ci left: 5.885311e-03	ci right 6.721048e-03	k: 881	n:140000
KS ci ratio: 7.679863e-03	ci left: 6.479599e-01	ci right 6.529624e-01	k: 91065	n:140000
RAB3B   140000 perm   32 sec   (4441 perm/sec)   p_kst 6.504643e-01   p_cons 6.292857e-03   p_joint 6.292857e-03

Joint ci ratio: 1.267107e-01	ci left: 5.938109e-03	ci right 6.747817e-03	k: 950	n:150000
Cons ci ratio: 1.267107e-01	ci left: 5.938109e-03	ci right 6.747817e-03	k: 950	n:150000
KS ci ratio: 7.421484e-03	ci left: 6.479206e-01	ci right 6.527536e-01	k: 97551	n:150000
RAB3B   150000 perm   34 sec   (4365 perm/sec)   p_kst 6.503400e-01   p_cons 6.333333e-03   p_joint 6.333333e-03

Joint ci ratio: 1.230171e-01	ci left: 5.918151e-03	ci right 6.699900e-03	k: 1008	n:160000
Cons ci ratio: 1.230171e-01	ci left: 5.918151e-03	ci right 6.699900e-03	k: 1008	n:160000
KS ci ratio: 7.189319e-03	ci left: 6.477760e-01	ci right 6.524561e-01	k: 104019	n:160000
RAB3B   160000 perm   37 sec   (4296 perm/sec)   p_kst 6.501187e-01   p_cons 6.300000e-03   p_joint 6.300000e-03

Joint ci ratio: 1.189020e-01	ci left: 5.975047e-03	ci right 6.736053e-03	k: 1079	n:170000
Cons ci ratio: 1.189020e-01	ci left: 5.975047e-03	ci right 6.736053e-03	k: 1079	n:170000
KS ci ratio: 6.973241e-03	ci left: 6.479393e-01	ci right 6.524791e-01	k: 110536	n:170000
RAB3B   170000 perm   40 sec   (4229 perm/sec)   p_kst 6.502118e-01   p_cons 6.347059e-03   p_joint 6.347059e-03

Joint ci ratio: 1.160395e-01	ci left: 5.934277e-03	ci right 6.670648e-03	k: 1133	n:180000
Cons ci ratio: 1.160395e-01	ci left: 5.934277e-03	ci right 6.670648e-03	k: 1133	n:180000
KS ci ratio: 6.784068e-03	ci left: 6.475132e-01	ci right 6.519264e-01	k: 116950	n:180000
RAB3B   180000 perm   43 sec   (4165 perm/sec)   p_kst 6.497222e-01   p_cons 6.294444e-03   p_joint 6.294444e-03

Joint ci ratio: 1.130873e-01	ci left: 5.928687e-03	ci right 6.644397e-03	k: 1193	n:190000
Cons ci ratio: 1.130873e-01	ci left: 5.928687e-03	ci right 6.644397e-03	k: 1193	n:190000
KS ci ratio: 6.601466e-03	ci left: 6.476870e-01	ci right 6.519821e-01	k: 123469	n:190000
RAB3B   190000 perm   46 sec   (4103 perm/sec)   p_kst 6.498368e-01   p_cons 6.278947e-03   p_joint 6.278947e-03

Joint ci ratio: 1.098656e-01	ci left: 5.977363e-03	ci right 6.677062e-03	k: 1264	n:200000
Cons ci ratio: 1.098656e-01	ci left: 5.977363e-03	ci right 6.677062e-03	k: 1264	n:200000
KS ci ratio: 6.429676e-03	ci left: 6.480702e-01	ci right 6.522555e-01	k: 130033	n:200000
RAB3B   200000 perm   49 sec   (4042 perm/sec)   p_kst 6.501650e-01   p_cons 6.320000e-03   p_joint 6.320000e-03

Joint ci ratio: 1.072687e-01	ci left: 5.979948e-03	ci right 6.662358e-03	k: 1326	n:210000
Cons ci ratio: 1.072687e-01	ci left: 5.979948e-03	ci right 6.662358e-03	k: 1326	n:210000
KS ci ratio: 6.274174e-03	ci left: 6.481606e-01	ci right 6.522448e-01	k: 136543	n:210000
RAB3B   210000 perm   53 sec   (3983 perm/sec)   p_kst 6.502048e-01   p_cons 6.314286e-03   p_joint 6.314286e-03

Joint ci ratio: 1.047718e-01	ci left: 5.991329e-03	ci right 6.658142e-03	k: 1390	n:220000
Cons ci ratio: 1.047718e-01	ci left: 5.991329e-03	ci right 6.658142e-03	k: 1390	n:220000
KS ci ratio: 6.136848e-03	ci left: 6.476932e-01	ci right 6.516847e-01	k: 142932	n:220000
RAB3B   220000 perm   56 sec   (3929 perm/sec)   p_kst 6.496909e-01   p_cons 6.318182e-03   p_joint 6.318182e-03

Joint ci ratio: 1.026903e-01	ci left: 5.972230e-03	ci right 6.622915e-03	k: 1447	n:230000
Cons ci ratio: 1.026903e-01	ci left: 5.972230e-03	ci right 6.622915e-03	k: 1447	n:230000
KS ci ratio: 5.999257e-03	ci left: 6.479422e-01	ci right 6.518453e-01	k: 149476	n:230000
RAB3B   230000 perm   59 sec   (3876 perm/sec)   p_kst 6.498957e-01   p_cons 6.291304e-03   p_joint 6.291304e-03

Joint ci ratio: 1.000613e-01	ci left: 6.036096e-03	ci right 6.675914e-03	k: 1524	n:240000
Cons ci ratio: 1.000613e-01	ci left: 6.036096e-03	ci right 6.675914e-03	k: 1524	n:240000
KS ci ratio: 5.872565e-03	ci left: 6.480128e-01	ci right 6.518336e-01	k: 155982	n:240000
RAB3B   240000 perm   63 sec   (3823 perm/sec)   p_kst 6.499250e-01   p_cons 6.350000e-03   p_joint 6.350000e-03

Joint ci ratio: 9.849436e-02	ci left: 5.985777e-03	ci right 6.609752e-03	k: 1573	n:250000
Cons ci ratio: 9.849436e-02	ci left: 5.985777e-03	ci right 6.609752e-03	k: 1573	n:250000
KS ci ratio: 5.751602e-03	ci left: 6.482347e-01	ci right 6.519778e-01	k: 162527	n:250000
RAB3B   250000 perm   66 sec   (3762 perm/sec)   p_kst 6.501080e-01   p_cons 6.292000e-03   p_joint 6.292000e-03

Outputting figure to mutsig2_images.part000000000142/RAB3B.2_676_250000_0.65011_0.006292_0.006292.png
                gene_name: RAB3B
               theta_stop: 0.098 
                    nperm: 250000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.0063 
      ci_cons_bounds_left: 0.0060 
     ci_cons_bounds_right: 0.0066 
                  p_joint: 0.0063 
     ci_joint_bounds_left: 0.0060 
    ci_joint_bounds_right: 0.0066 

Current progress: 52 percent done.
RAB3IL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.186767e-02	ci left: 9.104942e-01	ci right 9.214620e-01	k: 9161	n:10000
Cons ci ratio: 2.846609e-02	ci left: 6.452870e-01	ci right 6.640228e-01	k: 6547	n:10000
KS ci ratio: 7.827576e-02	ci left: 1.925924e-01	ci right 2.083825e-01	k: 2004	n:10000
RAB3IL1   10000 perm   2 sec   (6586 perm/sec)   p_kst 2.004000e-01   p_cons 6.547000e-01   p_joint 9.161000e-01

Outputting figure to mutsig2_images.part000000000142/RAB3IL1.2_1189_10000_0.2004_0.6547_0.9161.png
                gene_name: RAB3IL1
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 55 percent done.
RAB40A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.779552e-02	ci left: 6.560548e-01	ci right 6.746488e-01	k: 6654	n:10000
KS ci ratio: 2.040594e-02	ci left: 7.786397e-01	ci right 7.947930e-01	k: 7868	n:10000
RAB40A   10000 perm   1 sec   (7242 perm/sec)   p_kst 7.868000e-01   p_cons 6.654000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000142/RAB40A.2_838_10000_0.7868_0.6654_1.png
                gene_name: RAB40A
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 59 percent done.
RAB40AL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.565297e-02	ci left: 4.145864e-01	ci right 4.340577e-01	k: 4243	n:10000
KS ci ratio: 3.901428e-02	ci left: 4.924508e-01	ci right 5.121478e-01	k: 5023	n:10000
RAB40AL   10000 perm   1 sec   (7222 perm/sec)   p_kst 5.023000e-01   p_cons 4.243000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000142/RAB40AL.2_841_10000_0.5023_0.4243_1.png
                gene_name: RAB40AL
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
RAB41
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.776672e-02	ci left: 1.946611e-01	ci right 2.105125e-01	k: 2025	n:10000
Cons ci ratio: 8.243893e-02	ci left: 1.767434e-01	ci right 1.920409e-01	k: 1843	n:10000
KS ci ratio: 6.244088e-02	ci left: 2.737893e-01	ci right 2.915374e-01	k: 2826	n:10000
RAB41   10000 perm   1 sec   (7028 perm/sec)   p_kst 2.826000e-01   p_cons 1.843000e-01   p_joint 2.025000e-01

Outputting figure to mutsig2_images.part000000000142/RAB41.2_698_10000_0.2826_0.1843_0.2025.png
                gene_name: RAB41
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 66 percent done.
RAB6B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.978354e-03	ci left: 9.877409e-01	ci right 9.917661e-01	k: 9899	n:10000
Cons ci ratio: 9.121080e-02	ci left: 1.487429e-01	ci right 1.630582e-01	k: 1558	n:10000
KS ci ratio: 2.001624e-02	ci left: 7.851271e-01	ci right 8.011018e-01	k: 7932	n:10000
RAB6B   10000 perm   1 sec   (7077 perm/sec)   p_kst 7.932000e-01   p_cons 1.558000e-01   p_joint 9.899000e-01

Outputting figure to mutsig2_images.part000000000142/RAB6B.2_659_10000_0.7932_0.1558_0.9899.png
                gene_name: RAB6B
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 69 percent done.
RAB7A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.661776e-02	ci left: 6.751883e-01	ci right 6.935042e-01	k: 6844	n:10000
KS ci ratio: 2.002574e-01	ci left: 3.319542e-02	ci right 4.067746e-02	k: 368	n:10000
RAB7A   10000 perm   1 sec   (7390 perm/sec)   p_kst 3.680000e-02   p_cons 6.844000e-01   p_joint 1

Joint ci ratio: 1.987403e-02	ci left: 6.538390e-01	ci right 6.670143e-01	k: 13209	n:20000
Cons ci ratio: 1.803549e-02	ci left: 6.961604e-01	ci right 7.088807e-01	k: 14051	n:20000
KS ci ratio: 1.436398e-01	ci left: 3.331605e-02	ci right 3.852000e-02	k: 717	n:20000
RAB7A   20000 perm   3 sec   (6470 perm/sec)   p_kst 3.585000e-02   p_cons 7.025500e-01   p_joint 6.604500e-01

Joint ci ratio: 1.745799e-02	ci left: 6.214320e-01	ci right 6.324101e-01	k: 18808	n:30000
Cons ci ratio: 1.465268e-02	ci left: 6.994347e-01	ci right 7.097924e-01	k: 21139	n:30000
KS ci ratio: 1.170570e-01	ci left: 3.392034e-02	ci right 3.817013e-02	k: 1080	n:30000
RAB7A   30000 perm   5 sec   (6088 perm/sec)   p_kst 3.600000e-02   p_cons 7.046333e-01   p_joint 6.269333e-01

Joint ci ratio: 3.176842e-02	ci left: 2.712998e-01	ci right 2.800828e-01	k: 11027	n:40000
Cons ci ratio: 1.266933e-02	ci left: 7.008049e-01	ci right 7.097653e-01	k: 28212	n:40000
KS ci ratio: 1.021244e-01	ci left: 3.370793e-02	ci right 3.735990e-02	k: 1420	n:40000
RAB7A   40000 perm   7 sec   (5848 perm/sec)   p_kst 3.550000e-02   p_cons 7.053000e-01   p_joint 2.756750e-01

Joint ci ratio: 2.861366e-02	ci left: 2.689988e-01	ci right 2.768276e-01	k: 13645	n:50000
Cons ci ratio: 1.129694e-02	ci left: 7.025670e-01	ci right 7.105690e-01	k: 35329	n:50000
KS ci ratio: 9.111062e-02	ci left: 3.407113e-02	ci right 3.734306e-02	k: 1784	n:50000
RAB7A   50000 perm   9 sec   (5667 perm/sec)   p_kst 3.568000e-02   p_cons 7.065800e-01   p_joint 2.729000e-01

Outputting figure to mutsig2_images.part000000000142/RAB7A.2_644_50000_0.03568_0.70658_0.2729.png
                gene_name: RAB7A
               theta_stop: 0.091 
                    nperm: 50000 
                     p_ks: 0.036 
        ci_ks_bounds_left: 0.034 
       ci_ks_bounds_right: 0.037 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 72 percent done.
RABEP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.907736e-02	ci left: 3.798263e-01	ci right 3.990382e-01	k: 3894	n:10000
KS ci ratio: 3.708012e-02	ci left: 5.178584e-01	ci right 5.375255e-01	k: 5277	n:10000
RABEP2   10000 perm   2 sec   (6395 perm/sec)   p_kst 5.277000e-01   p_cons 3.894000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000142/RABEP2.2_1762_10000_0.5277_0.3894_1.png
                gene_name: RABEP2
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
RABGAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.736371e-02	ci left: 5.140556e-01	ci right 5.337305e-01	k: 5239	n:10000
Cons ci ratio: 9.796826e-02	ci left: 1.311983e-01	ci right 1.448133e-01	k: 1379	n:10000
KS ci ratio: 6.575560e-02	ci left: 2.535008e-01	ci right 2.708379e-01	k: 2621	n:10000
RABGAP1   10000 perm   2 sec   (5656 perm/sec)   p_kst 2.621000e-01   p_cons 1.379000e-01   p_joint 5.239000e-01

Outputting figure to mutsig2_images.part000000000142/RABGAP1.2_3310_10000_0.2621_0.1379_0.5239.png
                gene_name: RABGAP1
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 79 percent done.
RABGGTB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.443180e-02	ci left: 4.278462e-01	ci right 4.473902e-01	k: 4376	n:10000
KS ci ratio: 1.462208e-02	ci left: 8.713228e-01	ci right 8.842562e-01	k: 8779	n:10000
RABGGTB   10000 perm   1 sec   (6774 perm/sec)   p_kst 8.779000e-01   p_cons 4.376000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000142/RABGGTB.2_1032_10000_0.8779_0.4376_1.png
                gene_name: RABGGTB
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
RABIF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.048988e-02	ci left: 1.508034e-01	ci right 1.651964e-01	k: 1579	n:10000
Cons ci ratio: 5.972212e-02	ci left: 2.920188e-01	ci right 3.100972e-01	k: 3010	n:10000
KS ci ratio: 1.356182e-01	ci left: 7.184865e-02	ci right 8.239926e-02	k: 770	n:10000
RABIF   10000 perm   1 sec   (7184 perm/sec)   p_kst 7.700000e-02   p_cons 3.010000e-01   p_joint 1.579000e-01

Joint ci ratio: 9.837429e-02	ci left: 6.992060e-02	ci right 7.720396e-02	k: 1470	n:20000
Cons ci ratio: 4.248224e-02	ci left: 2.922124e-01	ci right 3.049462e-01	k: 5971	n:20000
KS ci ratio: 9.837429e-02	ci left: 6.992060e-02	ci right 7.720396e-02	k: 1470	n:20000
RABIF   20000 perm   3 sec   (6281 perm/sec)   p_kst 7.350000e-02   p_cons 2.985500e-01   p_joint 7.350000e-02

Outputting figure to mutsig2_images.part000000000142/RABIF.2_380_20000_0.0735_0.29855_0.0735.png
                gene_name: RABIF
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.073 
        ci_ks_bounds_left: 0.070 
       ci_ks_bounds_right: 0.077 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.073 
     ci_joint_bounds_left: 0.070 
    ci_joint_bounds_right: 0.077 

Current progress: 86 percent done.
RABL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.899674e-02	ci left: 6.368375e-01	ci right 6.556772e-01	k: 6463	n:10000
Cons ci ratio: 4.568101e-02	ci left: 4.142874e-01	ci right 4.337569e-01	k: 4240	n:10000
KS ci ratio: 5.170467e-02	ci left: 3.554552e-01	ci right 3.744236e-01	k: 3649	n:10000
RABL3   10000 perm   1 sec   (6918 perm/sec)   p_kst 3.649000e-01   p_cons 4.240000e-01   p_joint 6.463000e-01

Outputting figure to mutsig2_images.part000000000142/RABL3.2_743_10000_0.3649_0.424_0.6463.png
                gene_name: RABL3
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 90 percent done.
RAD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.669465e-02	ci left: 8.392842e-01	ci right 8.535134e-01	k: 8465	n:10000
KS ci ratio: 2.961459e-02	ci left: 6.270843e-01	ci right 6.460361e-01	k: 6366	n:10000
RAD1   10000 perm   1 sec   (6853 perm/sec)   p_kst 6.366000e-01   p_cons 8.465000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000142/RAD1.2_869_10000_0.6366_0.8465_1.png
                gene_name: RAD1
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
RAD17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.418105e-03	ci left: 9.408695e-01	ci right 9.498689e-01	k: 9455	n:10000
KS ci ratio: 1.456068e-02	ci left: 8.722429e-01	ci right 8.851355e-01	k: 8788	n:10000
RAD17   10000 perm   2 sec   (6139 perm/sec)   p_kst 8.788000e-01   p_cons 9.455000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000142/RAD17.2_2123_10000_0.8788_0.9455_1.png
                gene_name: RAD17
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
RAD21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.897772e-02	ci left: 6.371392e-01	ci right 6.559753e-01	k: 6466	n:10000
KS ci ratio: 6.659877e-02	ci left: 2.486549e-01	ci right 2.658867e-01	k: 2572	n:10000
RAD21   10000 perm   2 sec   (6305 perm/sec)   p_kst 2.572000e-01   p_cons 6.466000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000142/RAD21.2_1948_10000_0.2572_0.6466_1.png
                gene_name: RAD21
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000142
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 142 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1707>
Subject: Job 8004473: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1707>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000143> was used as the working directory.
Started at Sun Nov 11 15:15:15 2012
Results reported at Sun Nov 11 15:24:19 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000143.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000143.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 143  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000143.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    580.71 sec.
    Max Memory :      4665 MB
    Max Swap   :      7057 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
143
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 143
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 143: processing genes 12848 - 12937
Calculating significance of each gene.
Using projection method.
12848	RAD23B	1
12849	RAD50	8.641237e-01
12850	RAD51	5.747719e-01
12851	RAD51AP1	1
12852	RAD51AP2	7.196856e-01
12853	RAD51C	1
12854	RAD51L1	4.360652e-01
12855	RAD51L3	5.790152e-01
12856	RAD52	1
12857	RAD54B	1
12858	RAD54L	9.262005e-01
12859	RAD54L2	9.986938e-01
12860	RAD9A	8.250341e-01
12861	RAD9B	6.041175e-01
12862	RADIL	1
12863	RAE1	4.000569e-01
12864	RAET1E	1
12865	RAET1G	6.809363e-01
12866	RAET1L	6.357323e-01
12867	RAF1	9.291563e-01
12868	RAG1	2.033984e-01
12869	RAG1AP1	1
12870	RAG2	2.660425e-01
12871	RAGE	8.225930e-01
12872	RAI1	9.592096e-01
12873	RAI14	1
12874	RAI2	3.356417e-01
12875	RALA	3.655642e-02
12876	RALB	3.093909e-02
12877	RALBP1	9.375108e-01
12878	RALGAPA1	9.099035e-01
12879	RALGAPA2	7.735387e-02
12880	RALGAPB	9.710178e-01
12881	RALGDS	9.526923e-01
12882	RALGPS1	9.271997e-01
12883	RALGPS2	2.856170e-01
12884	RALY	3.564581e-01
12885	RALYL	1
12886	RAMP1	1
12887	RAMP2	4.517718e-01
12888	RAMP3	1
12889	RAN	1
12890	RANBP1	1
12891	RANBP10	8.539461e-01
12892	RANBP17	9.632603e-01
12893	RANBP2	9.999962e-01
12894	RANBP3	1
12895	RANBP3L	3.984252e-01
12896	RANBP6	6.239665e-01
12897	RANBP9	7.254526e-01
12898	RANGAP1	2.517660e-01
12899	RANGRF	1
12900	RAP1A	4.872621e-01
12901	RAP1B	5.147650e-01
12902	RAP1GAP	6.926398e-01
12903	RAP1GAP2	9.214033e-01
12904	RAP1GDS1	5.742945e-01
12905	RAP2A	1
12906	RAP2B	1
12907	RAP2C	1
12908	RAPGEF1	6.982788e-01
12909	RAPGEF2	6.149813e-01
12910	RAPGEF3	9.124206e-01
12911	RAPGEF4	3.043409e-01
12912	RAPGEF5	1
12913	RAPGEF6	9.821279e-01
12914	RAPGEFL1	4.007528e-01
12915	RAPH1	9.845738e-01
12916	RAPSN	1.780017e-01
12917	RARA	7.682477e-01
12918	RARB	3.161626e-01
12919	RARG	8.319725e-01
12920	RARRES1	1
12921	RARRES2	2.349293e-01
12922	RARRES3	1
12923	RARS	2.038233e-01
12924	RARS2	7.212208e-01
12925	RASA1	2.354732e-02
12926	RASA2	6.607896e-01
12927	RASA3	1
12928	RASAL1	1.862230e-01
12929	RASAL2	9.828349e-01
12930	RASAL3	1.816875e-01
12931	RASD1	1.324487e-01
12932	RASD2	4.310212e-02
12933	RASEF	3.196173e-01
12934	RASGEF1A	4.808697e-01
12935	RASGEF1B	1.843565e-01
12936	RASGEF1C	7.354219e-01
12937	RASGRF1	9.893271e-01
Done

Running MutSig 2:
Scatter job 143: processing genes 12848 - 12937
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
RANBP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.863654e-02	ci left: 3.841063e-01	ci right 4.033556e-01	k: 3937	n:10000
Cons ci ratio: 6.372771e-02	ci left: 2.656711e-01	ci right 2.832604e-01	k: 2744	n:10000
KS ci ratio: 7.393882e-02	ci left: 2.112229e-01	ci right 2.275409e-01	k: 2193	n:10000
RANBP2   10000 perm   3 sec   (3209 perm/sec)   p_kst 2.193000e-01   p_cons 2.744000e-01   p_joint 3.937000e-01

Outputting figure to mutsig2_images.part000000000143/RANBP2.14_9791_10000_0.2193_0.2744_0.3937.png
                gene_name: RANBP2
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 2 percent done.
RALGAPA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.437344e-02	ci left: 3.326001e-01	ci right 3.512920e-01	k: 3419	n:10000
Cons ci ratio: 7.607495e-02	ci left: 2.017565e-01	ci right 2.178129e-01	k: 2097	n:10000
KS ci ratio: 5.645451e-02	ci left: 3.160206e-01	ci right 3.344813e-01	k: 3252	n:10000
RALGAPA2   10000 perm   2 sec   (4170 perm/sec)   p_kst 3.252000e-01   p_cons 2.097000e-01   p_joint 3.419000e-01

Outputting figure to mutsig2_images.part000000000143/RALGAPA2.12_5778_10000_0.3252_0.2097_0.3419.png
                gene_name: RALGAPA2
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 4 percent done.
RALGAPB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.947870e-02	ci left: 1.276742e-01	ci right 1.411395e-01	k: 1343	n:10000
Cons ci ratio: 1.172051e-01	ci left: 9.467402e-02	ci right 1.065598e-01	k: 1005	n:10000
KS ci ratio: 6.100950e-02	ci left: 2.831991e-01	ci right 3.011221e-01	k: 2921	n:10000
RALGAPB   10000 perm   2 sec   (4361 perm/sec)   p_kst 2.921000e-01   p_cons 1.005000e-01   p_joint 1.343000e-01

Joint ci ratio: 8.781642e-02	ci left: 8.660762e-02	ci right 9.461186e-02	k: 1811	n:20000
Cons ci ratio: 8.101066e-02	ci left: 1.005386e-01	ci right 1.090767e-01	k: 2095	n:20000
KS ci ratio: 4.502865e-02	ci left: 2.685716e-01	ci right 2.809940e-01	k: 5495	n:20000
RALGAPB   20000 perm   5 sec   (4011 perm/sec)   p_kst 2.747500e-01   p_cons 1.047500e-01   p_joint 9.055000e-02

Outputting figure to mutsig2_images.part000000000143/RALGAPB.9_4601_20000_0.27475_0.10475_0.09055.png
                gene_name: RALGAPB
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.091 
     ci_joint_bounds_left: 0.087 
    ci_joint_bounds_right: 0.095 

Current progress: 6 percent done.
RASA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.302053e-01	ci left: 7.766482e-02	ci right 8.857947e-02	k: 830	n:10000
Cons ci ratio: 9.491770e-02	ci left: 1.387411e-01	ci right 1.526660e-01	k: 1456	n:10000
KS ci ratio: 1.865137e-01	ci left: 3.834345e-02	ci right 4.632594e-02	k: 422	n:10000
RASA1   10000 perm   2 sec   (4716 perm/sec)   p_kst 4.220000e-02   p_cons 1.456000e-01   p_joint 8.300000e-02

Joint ci ratio: 1.007218e-01	ci left: 6.684339e-02	ci right 7.398211e-02	k: 1407	n:20000
Cons ci ratio: 6.612505e-02	ci left: 1.444857e-01	ci right 1.544164e-01	k: 2988	n:20000
KS ci ratio: 1.302097e-01	ci left: 4.052082e-02	ci right 4.621290e-02	k: 866	n:20000
RASA1   20000 perm   5 sec   (4326 perm/sec)   p_kst 4.330000e-02   p_cons 1.494000e-01   p_joint 7.035000e-02

Joint ci ratio: 9.095804e-02	ci left: 5.564217e-02	ci right 6.097710e-02	k: 1748	n:30000
Cons ci ratio: 5.389580e-02	ci left: 1.458450e-01	ci right 1.539563e-01	k: 4496	n:30000
KS ci ratio: 1.074221e-01	ci left: 4.021255e-02	ci right 4.480992e-02	k: 1274	n:30000
RASA1   30000 perm   7 sec   (4177 perm/sec)   p_kst 4.246667e-02   p_cons 1.498667e-01   p_joint 5.826667e-02

Joint ci ratio: 8.031989e-02	ci left: 5.393828e-02	ci right 5.847642e-02	k: 2247	n:40000
Cons ci ratio: 4.662040e-02	ci left: 1.466871e-01	ci right 1.537138e-01	k: 6007	n:40000
KS ci ratio: 9.331766e-02	ci left: 4.027503e-02	ci right 4.424177e-02	k: 1689	n:40000
RASA1   40000 perm   10 sec   (4073 perm/sec)   p_kst 4.222500e-02   p_cons 1.501750e-01   p_joint 5.617500e-02

Outputting figure to mutsig2_images.part000000000143/RASA1.8_3256_40000_0.042225_0.15018_0.056175.png
                gene_name: RASA1
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.042 
        ci_ks_bounds_left: 0.040 
       ci_ks_bounds_right: 0.044 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.056 
     ci_joint_bounds_left: 0.054 
    ci_joint_bounds_right: 0.058 

Current progress: 8 percent done.
RASAL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.421708e-02	ci left: 5.577214e-01	ci right 5.772393e-01	k: 5675	n:10000
Cons ci ratio: 5.709069e-02	ci left: 3.111584e-01	ci right 3.295464e-01	k: 3203	n:10000
KS ci ratio: 4.314654e-02	ci left: 4.423104e-01	ci right 4.619175e-01	k: 4521	n:10000
RASAL2   10000 perm   2 sec   (4897 perm/sec)   p_kst 4.521000e-01   p_cons 3.203000e-01   p_joint 5.675000e-01

Outputting figure to mutsig2_images.part000000000143/RASAL2.8_3953_10000_0.4521_0.3203_0.5675.png
                gene_name: RASAL2
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 10 percent done.
RAG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.038022e-03	ci left: 9.451295e-01	ci right 9.538063e-01	k: 9496	n:10000
Cons ci ratio: 4.619910e-02	ci left: 4.088062e-01	ci right 4.282413e-01	k: 4185	n:10000
KS ci ratio: 1.489344e-02	ci left: 8.672346e-01	ci right 8.803468e-01	k: 8739	n:10000
RAG1   10000 perm   2 sec   (4922 perm/sec)   p_kst 8.739000e-01   p_cons 4.185000e-01   p_joint 9.496000e-01

Outputting figure to mutsig2_images.part000000000143/RAG1.7_3136_10000_0.8739_0.4185_0.9496.png
                gene_name: RAG1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.95 

Current progress: 12 percent done.
RANBP17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.100929e-02	ci left: 3.617196e-01	ci right 3.807555e-01	k: 3712	n:10000
Cons ci ratio: 4.241384e-02	ci left: 4.507933e-01	ci right 4.704296e-01	k: 4606	n:10000
KS ci ratio: 6.463583e-02	ci left: 2.601291e-01	ci right 2.776057e-01	k: 2688	n:10000
RANBP17   10000 perm   2 sec   (4927 perm/sec)   p_kst 2.688000e-01   p_cons 4.606000e-01   p_joint 3.712000e-01

Outputting figure to mutsig2_images.part000000000143/RANBP17.7_3379_10000_0.2688_0.4606_0.3712.png
                gene_name: RANBP17
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 15 percent done.
RASAL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.334730e-01	ci left: 7.407714e-02	ci right 8.476939e-02	k: 793	n:10000
Cons ci ratio: 2.093398e-02	ci left: 7.698255e-01	ci right 7.862122e-01	k: 7781	n:10000
KS ci ratio: 1.912852e-01	ci left: 3.643453e-02	ci right 4.423614e-02	k: 402	n:10000
RASAL1   10000 perm   2 sec   (5358 perm/sec)   p_kst 4.020000e-02   p_cons 7.781000e-01   p_joint 7.930000e-02

Joint ci ratio: 8.734023e-02	ci left: 8.748975e-02	ci right 9.552946e-02	k: 1829	n:20000
Cons ci ratio: 1.507009e-02	ci left: 7.659699e-01	ci right 7.776510e-01	k: 15437	n:20000
KS ci ratio: 1.353497e-01	ci left: 3.751972e-02	ci right 4.301496e-02	k: 804	n:20000
RASAL1   20000 perm   4 sec   (4844 perm/sec)   p_kst 4.020000e-02   p_cons 7.718500e-01   p_joint 9.145000e-02

Joint ci ratio: 7.066365e-02	ci left: 8.973636e-02	ci right 9.634269e-02	k: 2790	n:30000
Cons ci ratio: 1.223420e-02	ci left: 7.690899e-01	ci right 7.785904e-01	k: 23216	n:30000
KS ci ratio: 1.074662e-01	ci left: 4.018007e-02	ci right 4.477573e-02	k: 1273	n:30000
RASAL1   30000 perm   6 sec   (4643 perm/sec)   p_kst 4.243333e-02   p_cons 7.738667e-01   p_joint 9.300000e-02

Joint ci ratio: 6.470214e-02	ci left: 8.132405e-02	ci right 8.678652e-02	k: 3361	n:40000
Cons ci ratio: 1.061227e-02	ci left: 7.691646e-01	ci right 7.773957e-01	k: 30932	n:40000
KS ci ratio: 9.199002e-02	ci left: 4.142394e-02	ci right 4.544268e-02	k: 1736	n:40000
RASAL1   40000 perm   9 sec   (4494 perm/sec)   p_kst 4.340000e-02   p_cons 7.733000e-01   p_joint 8.402500e-02

Outputting figure to mutsig2_images.part000000000143/RASAL1.7_2499_40000_0.0434_0.7733_0.084025.png
                gene_name: RASAL1
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.043 
        ci_ks_bounds_left: 0.041 
       ci_ks_bounds_right: 0.045 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.084 
     ci_joint_bounds_left: 0.081 
    ci_joint_bounds_right: 0.087 

Current progress: 17 percent done.
RASGRF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.822100e-02	ci left: 6.492111e-01	ci right 6.678964e-01	k: 6586	n:10000
Cons ci ratio: 8.363681e-02	ci left: 1.725141e-01	ci right 1.876728e-01	k: 1800	n:10000
KS ci ratio: 1.300512e-02	ci left: 8.948764e-01	ci right 9.066889e-01	k: 9009	n:10000
RASGRF1   10000 perm   2 sec   (4622 perm/sec)   p_kst 9.009000e-01   p_cons 1.800000e-01   p_joint 6.586000e-01

Outputting figure to mutsig2_images.part000000000143/RASGRF1.7_3934_10000_0.9009_0.18_0.6586.png
                gene_name: RASGRF1
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 19 percent done.
RAPGEF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.198004e-02	ci left: 7.523136e-01	ci right 7.691342e-01	k: 7608	n:10000
KS ci ratio: 9.490867e-03	ci left: 9.400391e-01	ci right 9.490997e-01	k: 9447	n:10000
RAPGEF2   10000 perm   2 sec   (4654 perm/sec)   p_kst 9.447000e-01   p_cons 7.608000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000143/RAPGEF2.6_4596_10000_0.9447_0.7608_1.png
                gene_name: RAPGEF2
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 21 percent done.
RAPGEF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.183017e-02	ci left: 5.929300e-01	ci right 6.122102e-01	k: 6026	n:10000
Cons ci ratio: 8.186790e-02	ci left: 1.788095e-01	ci right 1.941736e-01	k: 1864	n:10000
KS ci ratio: 7.194188e-03	ci left: 9.638355e-01	ci right 9.708888e-01	k: 9675	n:10000
RAPGEF4   10000 perm   2 sec   (5091 perm/sec)   p_kst 9.675000e-01   p_cons 1.864000e-01   p_joint 6.026000e-01

Outputting figure to mutsig2_images.part000000000143/RAPGEF4.6_3176_10000_0.9675_0.1864_0.6026.png
                gene_name: RAPGEF4
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 23 percent done.
RASAL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.926339e-02	ci left: 7.976037e-01	ci right 8.132180e-01	k: 8055	n:10000
Cons ci ratio: 3.901428e-02	ci left: 4.924508e-01	ci right 5.121478e-01	k: 5023	n:10000
KS ci ratio: 1.080128e-02	ci left: 9.243065e-01	ci right 9.344416e-01	k: 9295	n:10000
RASAL3   10000 perm   2 sec   (5083 perm/sec)   p_kst 9.295000e-01   p_cons 5.023000e-01   p_joint 8.055000e-01

Outputting figure to mutsig2_images.part000000000143/RASAL3.6_3104_10000_0.9295_0.5023_0.8055.png
                gene_name: RASAL3
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 25 percent done.
RAD51AP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.621107e-02	ci left: 3.179062e-01	ci right 3.363946e-01	k: 3271	n:10000
Cons ci ratio: 1.715456e-02	ci left: 8.319533e-01	ci right 8.464485e-01	k: 8393	n:10000
KS ci ratio: 9.148904e-02	ci left: 1.479580e-01	ci right 1.622435e-01	k: 1550	n:10000
RAD51AP2   10000 perm   2 sec   (5354 perm/sec)   p_kst 1.550000e-01   p_cons 8.393000e-01   p_joint 3.271000e-01

Outputting figure to mutsig2_images.part000000000143/RAD51AP2.5_3492_10000_0.155_0.8393_0.3271.png
                gene_name: RAD51AP2
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 27 percent done.
RAI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.129120e-02	ci left: 7.638510e-01	ci right 7.803902e-01	k: 7722	n:10000
KS ci ratio: 8.154618e-03	ci left: 9.545097e-01	ci right 9.624204e-01	k: 9586	n:10000
RAI1   10000 perm   2 sec   (4462 perm/sec)   p_kst 9.586000e-01   p_cons 7.722000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000143/RAI1.5_5737_10000_0.9586_0.7722_1.png
                gene_name: RAI1
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 29 percent done.
RALGAPA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.752127e-02	ci left: 5.119543e-01	ci right 5.316330e-01	k: 5218	n:10000
Cons ci ratio: 9.615707e-02	ci left: 1.356056e-01	ci right 1.494034e-01	k: 1424	n:10000
KS ci ratio: 1.542238e-02	ci left: 8.591667e-01	ci right 8.726194e-01	k: 8660	n:10000
RALGAPA1   10000 perm   2 sec   (4437 perm/sec)   p_kst 8.660000e-01   p_cons 1.424000e-01   p_joint 5.218000e-01

Outputting figure to mutsig2_images.part000000000143/RALGAPA1.5_6424_10000_0.866_0.1424_0.5218.png
                gene_name: RALGAPA1
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 31 percent done.
RAI14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.133735e-02	ci left: 4.635730e-01	ci right 4.832425e-01	k: 4734	n:10000
Cons ci ratio: 2.874988e-02	ci left: 6.407601e-01	ci right 6.595523e-01	k: 6502	n:10000
KS ci ratio: 5.796730e-02	ci left: 3.046112e-01	ci right 3.228974e-01	k: 3137	n:10000
RAI14   10000 perm   2 sec   (4965 perm/sec)   p_kst 3.137000e-01   p_cons 6.502000e-01   p_joint 4.734000e-01

Outputting figure to mutsig2_images.part000000000143/RAI14.4_3076_10000_0.3137_0.6502_0.4734.png
                gene_name: RAI14
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 33 percent done.
RANBP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.572823e-02	ci left: 6.898019e-01	ci right 7.078821e-01	k: 6989	n:10000
Cons ci ratio: 2.726672e-02	ci left: 6.646124e-01	ci right 6.830863e-01	k: 6739	n:10000
KS ci ratio: 3.288380e-02	ci left: 5.771752e-01	ci right 5.965742e-01	k: 5869	n:10000
RANBP6   10000 perm   2 sec   (5054 perm/sec)   p_kst 5.869000e-01   p_cons 6.739000e-01   p_joint 6.989000e-01

Outputting figure to mutsig2_images.part000000000143/RANBP6.4_3322_10000_0.5869_0.6739_0.6989.png
                gene_name: RANBP6
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 35 percent done.
RANGAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.500499e-02	ci left: 4.215643e-01	ci right 4.410757e-01	k: 4313	n:10000
Cons ci ratio: 9.780389e-02	ci left: 1.315900e-01	ci right 1.452214e-01	k: 1383	n:10000
KS ci ratio: 1.151716e-02	ci left: 9.151276e-01	ci right 9.258259e-01	k: 9206	n:10000
RANGAP1   10000 perm   2 sec   (5638 perm/sec)   p_kst 9.206000e-01   p_cons 1.383000e-01   p_joint 4.313000e-01

Outputting figure to mutsig2_images.part000000000143/RANGAP1.4_1824_10000_0.9206_0.1383_0.4313.png
                gene_name: RANGAP1
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 38 percent done.
RAPGEF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.241134e-01	ci left: 8.504395e-02	ci right 9.639578e-02	k: 906	n:10000
Cons ci ratio: 9.572663e-02	ci left: 1.366833e-01	ci right 1.505251e-01	k: 1435	n:10000
KS ci ratio: 8.776711e-02	ci left: 1.589518e-01	ci right 1.736431e-01	k: 1662	n:10000
RAPGEF1   10000 perm   2 sec   (5107 perm/sec)   p_kst 1.662000e-01   p_cons 1.435000e-01   p_joint 9.060000e-02

Joint ci ratio: 8.525382e-02	ci left: 9.150982e-02	ci right 9.970819e-02	k: 1911	n:20000
Cons ci ratio: 6.752543e-02	ci left: 1.393091e-01	ci right 1.490946e-01	k: 2883	n:20000
KS ci ratio: 6.209524e-02	ci left: 1.609659e-01	ci right 1.713314e-01	k: 3322	n:20000
RAPGEF1   20000 perm   4 sec   (4661 perm/sec)   p_kst 1.661000e-01   p_cons 1.441500e-01   p_joint 9.555000e-02

Outputting figure to mutsig2_images.part000000000143/RAPGEF1.4_3398_20000_0.1661_0.14415_0.09555.png
                gene_name: RAPGEF1
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.096 
     ci_joint_bounds_left: 0.092 
    ci_joint_bounds_right: 0.100 

Current progress: 40 percent done.
RARS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.887410e-02	ci left: 4.942505e-01	ci right 5.139471e-01	k: 5041	n:10000
Cons ci ratio: 7.820259e-02	ci left: 1.928879e-01	ci right 2.086868e-01	k: 2007	n:10000
KS ci ratio: 2.205851e-02	ci left: 7.509985e-01	ci right 7.678501e-01	k: 7595	n:10000
RARS   10000 perm   2 sec   (5556 perm/sec)   p_kst 7.595000e-01   p_cons 2.007000e-01   p_joint 5.041000e-01

Outputting figure to mutsig2_images.part000000000143/RARS.4_2043_10000_0.7595_0.2007_0.5041.png
                gene_name: RARS
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 42 percent done.
RASD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.021733e-02	ci left: 7.817816e-01	ci right 7.978492e-01	k: 7899	n:10000
KS ci ratio: 2.482064e-02	ci left: 7.048299e-01	ci right 7.226454e-01	k: 7138	n:10000
RASD2   10000 perm   2 sec   (6095 perm/sec)   p_kst 7.138000e-01   p_cons 7.899000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000143/RASD2.4_809_10000_0.7138_0.7899_1.png
                gene_name: RASD2
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 44 percent done.
RASEF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.339773e-01	ci left: 2.410011e-02	ci right 3.057918e-02	k: 272	n:10000
Cons ci ratio: 1.928182e-02	ci left: 7.972992e-01	ci right 8.129226e-01	k: 8052	n:10000
KS ci ratio: 5.223374e-01	ci left: 4.145961e-03	ci right 7.153063e-03	k: 55	n:10000
RASEF   10000 perm   2 sec   (5519 perm/sec)   p_kst 5.500000e-03   p_cons 8.052000e-01   p_joint 2.720000e-02

Joint ci ratio: 1.231716e-01	ci left: 4.522388e-02	ci right 5.120834e-02	k: 963	n:20000
Cons ci ratio: 1.359488e-02	ci left: 8.005515e-01	ci right 8.115594e-01	k: 16122	n:20000
KS ci ratio: 3.481110e-01	ci left: 5.205045e-03	ci right 7.442133e-03	k: 125	n:20000
RASEF   20000 perm   4 sec   (4955 perm/sec)   p_kst 6.250000e-03   p_cons 8.061000e-01   p_joint 4.815000e-02

Joint ci ratio: 1.302649e-01	ci left: 2.738837e-02	ci right 3.123684e-02	k: 878	n:30000
Cons ci ratio: 1.108115e-02	ci left: 8.021180e-01	ci right 8.110892e-01	k: 24199	n:30000
KS ci ratio: 2.849935e-01	ci left: 5.374137e-03	ci right 7.190140e-03	k: 187	n:30000
RASEF   30000 perm   6 sec   (4747 perm/sec)   p_kst 6.233333e-03   p_cons 8.066333e-01   p_joint 2.926667e-02

Joint ci ratio: 1.232245e-01	ci left: 2.315256e-02	ci right 2.621697e-02	k: 986	n:40000
Cons ci ratio: 9.585242e-03	ci left: 8.030977e-01	ci right 8.108576e-01	k: 32280	n:40000
KS ci ratio: 2.538728e-01	ci left: 5.173036e-03	ci right 6.700031e-03	k: 236	n:40000
RASEF   40000 perm   9 sec   (4603 perm/sec)   p_kst 5.900000e-03   p_cons 8.070000e-01   p_joint 2.465000e-02

Joint ci ratio: 1.210570e-01	ci left: 1.929524e-02	ci right 2.180086e-02	k: 1026	n:50000
Cons ci ratio: 8.778050e-03	ci left: 7.960035e-01	ci right 8.030416e-01	k: 39977	n:50000
KS ci ratio: 2.219476e-01	ci left: 5.511867e-03	ci right 6.906397e-03	k: 309	n:50000
RASEF   50000 perm   11 sec   (4477 perm/sec)   p_kst 6.180000e-03   p_cons 7.995400e-01   p_joint 2.052000e-02

Joint ci ratio: 8.307187e-02	ci left: 3.429488e-02	ci right 3.728357e-02	k: 2146	n:60000
Cons ci ratio: 7.999216e-03	ci left: 7.968772e-01	ci right 8.032938e-01	k: 48006	n:60000
KS ci ratio: 2.039939e-01	ci left: 5.492623e-03	ci right 6.755865e-03	k: 366	n:60000
RASEF   60000 perm   14 sec   (4378 perm/sec)   p_kst 6.100000e-03   p_cons 8.001000e-01   p_joint 3.576667e-02

Joint ci ratio: 7.717906e-02	ci left: 3.416941e-02	ci right 3.692641e-02	k: 2487	n:70000
Cons ci ratio: 7.394582e-03	ci left: 7.976062e-01	ci right 8.035403e-01	k: 56041	n:70000
KS ci ratio: 1.880169e-01	ci left: 5.591054e-03	ci right 6.764732e-03	k: 431	n:70000
RASEF   70000 perm   16 sec   (4292 perm/sec)   p_kst 6.157143e-03   p_cons 8.005857e-01   p_joint 3.552857e-02

Joint ci ratio: 7.697433e-02	ci left: 3.019002e-02	ci right 3.261912e-02	k: 2511	n:80000
Cons ci ratio: 6.912893e-03	ci left: 7.979901e-01	ci right 8.035381e-01	k: 64062	n:80000
KS ci ratio: 1.730253e-01	ci left: 5.823239e-03	ci right 6.938014e-03	k: 509	n:80000
RASEF   80000 perm   19 sec   (4212 perm/sec)   p_kst 6.362500e-03   p_cons 8.007750e-01   p_joint 3.138750e-02

Joint ci ratio: 7.658138e-02	ci left: 2.720447e-02	ci right 2.938163e-02	k: 2545	n:90000
Cons ci ratio: 6.502268e-03	ci left: 7.989012e-01	ci right 8.041238e-01	k: 72137	n:90000
KS ci ratio: 1.614048e-01	ci left: 5.985391e-03	ci right 7.046793e-03	k: 585	n:90000
RASEF   90000 perm   22 sec   (4139 perm/sec)   p_kst 6.500000e-03   p_cons 8.015222e-01   p_joint 2.827778e-02

Joint ci ratio: 7.781340e-02	ci left: 2.378607e-02	ci right 2.572163e-02	k: 2474	n:100000
Cons ci ratio: 6.163011e-03	ci left: 7.993255e-01	ci right 8.042769e-01	k: 80181	n:100000
KS ci ratio: 1.549423e-01	ci left: 5.867037e-03	ci right 6.861921e-03	k: 635	n:100000
RASEF   100000 perm   25 sec   (4067 perm/sec)   p_kst 6.350000e-03   p_cons 8.018100e-01   p_joint 2.474000e-02

Joint ci ratio: 7.748778e-02	ci left: 2.185462e-02	ci right 2.362522e-02	k: 2500	n:110000
Cons ci ratio: 5.872181e-03	ci left: 7.996600e-01	ci right 8.043786e-01	k: 88223	n:110000
KS ci ratio: 1.466388e-01	ci left: 5.981054e-03	ci right 6.936157e-03	k: 709	n:110000
RASEF   110000 perm   27 sec   (4002 perm/sec)   p_kst 6.445455e-03   p_cons 8.020273e-01   p_joint 2.272727e-02

Joint ci ratio: 7.515813e-02	ci left: 2.133289e-02	ci right 2.300698e-02	k: 2659	n:120000
Cons ci ratio: 5.622519e-03	ci left: 7.997423e-01	ci right 8.042598e-01	k: 96241	n:120000
KS ci ratio: 1.409969e-01	ci left: 5.948570e-03	ci right 6.858864e-03	k: 767	n:120000
RASEF   120000 perm   30 sec   (3940 perm/sec)   p_kst 6.391667e-03   p_cons 8.020083e-01   p_joint 2.215833e-02

Joint ci ratio: 9.259123e-02	ci left: 1.296989e-02	ci right 1.423656e-02	k: 1767	n:130000
Cons ci ratio: 5.395932e-03	ci left: 8.001863e-01	ci right 8.045233e-01	k: 104307	n:130000
KS ci ratio: 1.357119e-01	ci left: 5.943978e-03	ci right 6.816722e-03	k: 828	n:130000
RASEF   130000 perm   34 sec   (3876 perm/sec)   p_kst 6.369231e-03   p_cons 8.023615e-01   p_joint 1.359231e-02

Joint ci ratio: 9.149063e-02	ci left: 1.235034e-02	ci right 1.354139e-02	k: 1811	n:140000
Cons ci ratio: 5.203350e-03	ci left: 8.000390e-01	ci right 8.042199e-01	k: 112299	n:140000
KS ci ratio: 1.306847e-01	ci left: 5.968230e-03	ci right 6.809553e-03	k: 893	n:140000
RASEF   140000 perm   37 sec   (3816 perm/sec)   p_kst 6.378571e-03   p_cons 8.021357e-01   p_joint 1.293571e-02

Joint ci ratio: 8.224138e-02	ci left: 1.430601e-02	ci right 1.553951e-02	k: 2237	n:150000
Cons ci ratio: 5.025473e-03	ci left: 8.002018e-01	ci right 8.042399e-01	k: 120334	n:150000
KS ci ratio: 1.271149e-01	ci left: 5.899372e-03	ci right 6.706557e-03	k: 944	n:150000
RASEF   150000 perm   40 sec   (3760 perm/sec)   p_kst 6.293333e-03   p_cons 8.022267e-01   p_joint 1.491333e-02

Joint ci ratio: 8.332490e-02	ci left: 1.307491e-02	ci right 1.421782e-02	k: 2182	n:160000
Cons ci ratio: 4.862947e-03	ci left: 8.004591e-01	ci right 8.043674e-01	k: 128387	n:160000
KS ci ratio: 1.230171e-01	ci left: 5.918151e-03	ci right 6.699900e-03	k: 1008	n:160000
RASEF   160000 perm   43 sec   (3708 perm/sec)   p_kst 6.300000e-03   p_cons 8.024187e-01   p_joint 1.363750e-02

Joint ci ratio: 7.365566e-02	ci left: 1.578424e-02	ci right 1.699704e-02	k: 2785	n:170000
Cons ci ratio: 4.853214e-03	ci left: 7.913553e-01	ci right 7.952111e-01	k: 134859	n:170000
KS ci ratio: 1.200825e-01	ci left: 5.855188e-03	ci right 6.608859e-03	k: 1058	n:170000
RASEF   170000 perm   47 sec   (3656 perm/sec)   p_kst 6.223529e-03   p_cons 7.932882e-01   p_joint 1.638235e-02

Joint ci ratio: 6.648972e-02	ci left: 1.831416e-02	ci right 1.957918e-02	k: 3409	n:180000
Cons ci ratio: 4.716946e-03	ci left: 7.913772e-01	ci right 7.951244e-01	k: 142786	n:180000
KS ci ratio: 1.165578e-01	ci left: 5.880329e-03	ci right 6.613488e-03	k: 1123	n:180000
RASEF   180000 perm   50 sec   (3604 perm/sec)   p_kst 6.238889e-03   p_cons 7.932556e-01   p_joint 1.893889e-02

Joint ci ratio: 6.952124e-02	ci left: 1.588540e-02	ci right 1.703469e-02	k: 3126	n:190000
Cons ci ratio: 4.591989e-03	ci left: 7.913665e-01	ci right 7.950140e-01	k: 150707	n:190000
KS ci ratio: 1.135186e-01	ci left: 5.882653e-03	ci right 6.595696e-03	k: 1184	n:190000
RASEF   190000 perm   53 sec   (3554 perm/sec)   p_kst 6.231579e-03   p_cons 7.931947e-01   p_joint 1.645263e-02

Joint ci ratio: 6.471505e-02	ci left: 1.743166e-02	ci right 1.860237e-02	k: 3602	n:200000
Cons ci ratio: 4.476054e-03	ci left: 7.913882e-01	ci right 7.949433e-01	k: 158634	n:200000
KS ci ratio: 1.111099e-01	ci left: 5.841209e-03	ci right 6.533221e-03	k: 1236	n:200000
RASEF   200000 perm   57 sec   (3506 perm/sec)   p_kst 6.180000e-03   p_cons 7.931700e-01   p_joint 1.801000e-02

Joint ci ratio: 6.501928e-02	ci left: 1.646077e-02	ci right 1.757166e-02	k: 3572	n:210000
Cons ci ratio: 4.370951e-03	ci left: 7.912225e-01	ci right 7.946932e-01	k: 166522	n:210000
KS ci ratio: 1.083420e-01	ci left: 5.859457e-03	ci right 6.535235e-03	k: 1300	n:210000
RASEF   210000 perm   61 sec   (3460 perm/sec)   p_kst 6.190476e-03   p_cons 7.929619e-01   p_joint 1.700952e-02

Joint ci ratio: 5.973287e-02	ci left: 1.862616e-02	ci right 1.977746e-02	k: 4223	n:220000
Cons ci ratio: 4.271379e-03	ci left: 7.911914e-01	ci right 7.945827e-01	k: 174436	n:220000
KS ci ratio: 1.054606e-01	ci left: 5.911649e-03	ci right 6.574189e-03	k: 1372	n:220000
RASEF   220000 perm   64 sec   (3421 perm/sec)   p_kst 6.236364e-03   p_cons 7.928909e-01   p_joint 1.919545e-02

Joint ci ratio: 5.993197e-02	ci left: 1.771329e-02	ci right 1.881194e-02	k: 4199	n:230000
Cons ci ratio: 4.178095e-03	ci left: 7.911814e-01	ci right 7.944982e-01	k: 182354	n:230000
KS ci ratio: 1.027617e-01	ci left: 5.963756e-03	ci right 6.613998e-03	k: 1445	n:230000
RASEF   230000 perm   68 sec   (3381 perm/sec)   p_kst 6.282609e-03   p_cons 7.928435e-01   p_joint 1.825652e-02

Joint ci ratio: 5.422852e-02	ci left: 2.073017e-02	ci right 2.188976e-02	k: 5113	n:240000
Cons ci ratio: 4.089525e-03	ci left: 7.912648e-01	ci right 7.945114e-01	k: 190294	n:240000
KS ci ratio: 1.005267e-01	ci left: 5.979217e-03	ci right 6.616128e-03	k: 1510	n:240000
RASEF   240000 perm   72 sec   (3342 perm/sec)   p_kst 6.291667e-03   p_cons 7.928917e-01   p_joint 2.130417e-02

Joint ci ratio: 5.432267e-02	ci left: 1.984943e-02	ci right 2.096173e-02	k: 5100	n:250000
Cons ci ratio: 4.010408e-03	ci left: 7.910093e-01	ci right 7.941919e-01	k: 198151	n:250000
KS ci ratio: 9.818099e-02	ci left: 6.024799e-03	ci right 6.650728e-03	k: 1583	n:250000
RASEF   250000 perm   76 sec   (3304 perm/sec)   p_kst 6.332000e-03   p_cons 7.926040e-01   p_joint 2.040000e-02

Outputting figure to mutsig2_images.part000000000143/RASEF.4_2291_250000_0.006332_0.7926_0.0204.png
                gene_name: RASEF
               theta_stop: 0.098 
                    nperm: 250000 
                     p_ks: 0.0063 
        ci_ks_bounds_left: 0.0060 
       ci_ks_bounds_right: 0.0067 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.020 
     ci_joint_bounds_left: 0.020 
    ci_joint_bounds_right: 0.021 

Current progress: 46 percent done.
RAD50
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.152117e-02	ci left: 2.226698e-01	ci right 2.392872e-01	k: 2309	n:10000
Cons ci ratio: 5.099836e-02	ci left: 3.618190e-01	ci right 3.808560e-01	k: 3713	n:10000
KS ci ratio: 8.863152e-02	ci left: 1.563004e-01	ci right 1.708961e-01	k: 1635	n:10000
RAD50   10000 perm   2 sec   (5227 perm/sec)   p_kst 1.635000e-01   p_cons 3.713000e-01   p_joint 2.309000e-01

Outputting figure to mutsig2_images.part000000000143/RAD50.3_4039_10000_0.1635_0.3713_0.2309.png
                gene_name: RAD50
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 48 percent done.
RADIL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.917816e-01	ci left: 3.624378e-02	ci right 4.402702e-02	k: 400	n:10000
Cons ci ratio: 1.332907e-01	ci left: 7.427098e-02	ci right 8.497542e-02	k: 795	n:10000
KS ci ratio: 9.518550e-02	ci left: 1.380551e-01	ci right 1.519524e-01	k: 1449	n:10000
RADIL   10000 perm   2 sec   (5505 perm/sec)   p_kst 1.449000e-01   p_cons 7.950000e-02   p_joint 4.000000e-02

Joint ci ratio: 9.569699e-02	ci left: 7.368425e-02	ci right 8.113917e-02	k: 1547	n:20000
Cons ci ratio: 9.323836e-02	ci left: 7.740166e-02	ci right 8.502062e-02	k: 1623	n:20000
KS ci ratio: 6.764882e-02	ci left: 1.388655e-01	ci right 1.486383e-01	k: 2874	n:20000
RADIL   20000 perm   4 sec   (4932 perm/sec)   p_kst 1.437000e-01   p_cons 8.115000e-02   p_joint 7.735000e-02

Outputting figure to mutsig2_images.part000000000143/RADIL.3_3284_20000_0.1437_0.08115_0.07735.png
                gene_name: RADIL
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.081 
      ci_cons_bounds_left: 0.077 
     ci_cons_bounds_right: 0.085 
                  p_joint: 0.077 
     ci_joint_bounds_left: 0.074 
    ci_joint_bounds_right: 0.081 

Current progress: 50 percent done.
RAG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.079670e-02	ci left: 6.086951e-01	ci right 6.278360e-01	k: 6183	n:10000
Cons ci ratio: 5.742002e-02	ci left: 3.086781e-01	ci right 3.270281e-01	k: 3178	n:10000
KS ci ratio: 8.895760e-03	ci left: 9.466899e-01	ci right 9.552449e-01	k: 9511	n:10000
RAG2   10000 perm   2 sec   (6189 perm/sec)   p_kst 9.511000e-01   p_cons 3.178000e-01   p_joint 6.183000e-01

Outputting figure to mutsig2_images.part000000000143/RAG2.3_1588_10000_0.9511_0.3178_0.6183.png
                gene_name: RAG2
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 52 percent done.
RAI2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.409930e-02	ci left: 7.168405e-01	ci right 7.344279e-01	k: 7257	n:10000
Cons ci ratio: 4.959722e-02	ci left: 3.748505e-01	ci right 3.940169e-01	k: 3844	n:10000
KS ci ratio: 1.180587e-02	ci left: 9.113176e-01	ci right 9.222382e-01	k: 9169	n:10000
RAI2   10000 perm   2 sec   (5921 perm/sec)   p_kst 9.169000e-01   p_cons 3.844000e-01   p_joint 7.257000e-01

Outputting figure to mutsig2_images.part000000000143/RAI2.3_1597_10000_0.9169_0.3844_0.7257.png
                gene_name: RAI2
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 54 percent done.
RALA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.959588e-02	ci left: 4.850534e-01	ci right 5.047496e-01	k: 4949	n:10000
Cons ci ratio: 3.641604e-02	ci left: 5.268671e-01	ci right 5.465115e-01	k: 5367	n:10000
KS ci ratio: 5.260898e-02	ci left: 3.475029e-01	ci right 3.663805e-01	k: 3569	n:10000
RALA   10000 perm   2 sec   (6473 perm/sec)   p_kst 3.569000e-01   p_cons 5.367000e-01   p_joint 4.949000e-01

Outputting figure to mutsig2_images.part000000000143/RALA.3_637_10000_0.3569_0.5367_0.4949.png
                gene_name: RALA
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.50 

Current progress: 56 percent done.
RALB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.869935e-02	ci left: 6.415648e-01	ci right 6.603472e-01	k: 6510	n:10000
KS ci ratio: 1.189079e-02	ci left: 9.101855e-01	ci right 9.211709e-01	k: 9158	n:10000
RALB   10000 perm   2 sec   (6641 perm/sec)   p_kst 9.158000e-01   p_cons 6.510000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000143/RALB.3_637_10000_0.9158_0.651_1.png
                gene_name: RALB
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 58 percent done.
RALGPS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.061829e-02	ci left: 3.653000e-01	ci right 3.843730e-01	k: 3748	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
RALGPS2   10000 perm   2 sec   (5926 perm/sec)   p_kst 1   p_cons 3.748000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000143/RALGPS2.3_1828_10000_1_0.3748_1.png
                gene_name: RALGPS2
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.38 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 60 percent done.
RALYL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.986605e-02	ci left: 4.816553e-01	ci right 5.013497e-01	k: 4915	n:10000
KS ci ratio: 1.113507e-02	ci left: 9.200754e-01	ci right 9.304753e-01	k: 9254	n:10000
RALYL   10000 perm   2 sec   (6498 perm/sec)   p_kst 9.254000e-01   p_cons 4.915000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000143/RALYL.3_951_10000_0.9254_0.4915_1.png
                gene_name: RALYL
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
RANBP10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.362151e-02	ci left: 5.663433e-01	ci right 5.858123e-01	k: 5761	n:10000
Cons ci ratio: 1.002557e-01	ci left: 1.259128e-01	ci right 1.393020e-01	k: 1325	n:10000
KS ci ratio: 3.171070e-02	ci left: 5.947369e-01	ci right 6.140022e-01	k: 6044	n:10000
RANBP10   10000 perm   2 sec   (5090 perm/sec)   p_kst 6.044000e-01   p_cons 1.325000e-01   p_joint 5.761000e-01

Joint ci ratio: 2.373649e-02	ci left: 5.700172e-01	ci right 5.837605e-01	k: 11538	n:20000
Cons ci ratio: 7.046446e-02	ci left: 1.292581e-01	ci right 1.387486e-01	k: 2679	n:20000
KS ci ratio: 2.232804e-02	ci left: 5.996393e-01	ci right 6.132298e-01	k: 12129	n:20000
RANBP10   20000 perm   4 sec   (4857 perm/sec)   p_kst 6.064500e-01   p_cons 1.339500e-01   p_joint 5.769000e-01

Outputting figure to mutsig2_images.part000000000143/RANBP10.3_1919_20000_0.60645_0.13395_0.5769.png
                gene_name: RANBP10
               theta_stop: 0.070 
                    nperm: 20000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.58 

Current progress: 65 percent done.
RAPGEFL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.566232e-02	ci left: 4.144867e-01	ci right 4.339575e-01	k: 4242	n:10000
Cons ci ratio: 1.036150e-01	ci left: 1.186757e-01	ci right 1.317435e-01	k: 1251	n:10000
KS ci ratio: 1.557477e-02	ci left: 8.568193e-01	ci right 8.703681e-01	k: 8637	n:10000
RAPGEFL1   10000 perm   2 sec   (6002 perm/sec)   p_kst 8.637000e-01   p_cons 1.251000e-01   p_joint 4.242000e-01

Joint ci ratio: 2.698077e-02	ci left: 5.064965e-01	ci right 5.203996e-01	k: 10269	n:20000
Cons ci ratio: 7.280364e-02	ci left: 1.219718e-01	ci right 1.312370e-01	k: 2531	n:20000
KS ci ratio: 1.037445e-02	ci left: 8.725207e-01	ci right 8.816694e-01	k: 17543	n:20000
RAPGEFL1   20000 perm   4 sec   (5380 perm/sec)   p_kst 8.771500e-01   p_cons 1.265500e-01   p_joint 5.134500e-01

Outputting figure to mutsig2_images.part000000000143/RAPGEFL1.3_1423_20000_0.87715_0.12655_0.51345.png
                gene_name: RAPGEFL1
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.52 

Current progress: 67 percent done.
RAPSN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.177165e-02	ci left: 3.548587e-01	ci right 3.738204e-01	k: 3643	n:10000
Cons ci ratio: 3.854123e-02	ci left: 4.985503e-01	ci right 5.182448e-01	k: 5084	n:10000
KS ci ratio: 5.628775e-02	ci left: 3.173107e-01	ci right 3.357904e-01	k: 3265	n:10000
RAPSN   10000 perm   2 sec   (5602 perm/sec)   p_kst 3.265000e-01   p_cons 5.084000e-01   p_joint 3.643000e-01

Outputting figure to mutsig2_images.part000000000143/RAPSN.3_1271_10000_0.3265_0.5084_0.3643.png
                gene_name: RAPSN
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 69 percent done.
RARB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.918611e-02	ci left: 1.546314e-01	ci right 1.691662e-01	k: 1618	n:10000
KS ci ratio: 3.277544e-02	ci left: 5.787803e-01	ci right 5.981681e-01	k: 5885	n:10000
RARB   10000 perm   2 sec   (5402 perm/sec)   p_kst 5.885000e-01   p_cons 1.618000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000143/RARB.3_1379_10000_0.5885_0.1618_1.png
                gene_name: RARB
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
RASA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.791351e-02	ci left: 3.050079e-01	ci right 3.233005e-01	k: 3141	n:10000
Cons ci ratio: 1.235153e-01	ci left: 8.582142e-02	ci right 9.721783e-02	k: 914	n:10000
KS ci ratio: 2.773313e-02	ci left: 6.570614e-01	ci right 6.756416e-01	k: 6664	n:10000
RASA2   10000 perm   2 sec   (5148 perm/sec)   p_kst 6.664000e-01   p_cons 9.140000e-02   p_joint 3.141000e-01

Joint ci ratio: 3.217237e-02	ci left: 4.191330e-01	ci right 4.328886e-01	k: 8520	n:20000
Cons ci ratio: 8.881717e-02	ci left: 8.479472e-02	ci right 9.272531e-02	k: 1774	n:20000
KS ci ratio: 1.956253e-02	ci left: 6.609219e-01	ci right 6.740294e-01	k: 13350	n:20000
RASA2   20000 perm   4 sec   (4829 perm/sec)   p_kst 6.675000e-01   p_cons 8.870000e-02   p_joint 4.260000e-01

Outputting figure to mutsig2_images.part000000000143/RASA2.3_2646_20000_0.6675_0.0887_0.426.png
                gene_name: RASA2
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.089 
      ci_cons_bounds_left: 0.085 
     ci_cons_bounds_right: 0.093 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.43 

Current progress: 73 percent done.
RASGEF1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.017651e-01	ci left: 1.225867e-01	ci right 1.358301e-01	k: 1291	n:10000
Cons ci ratio: 1.607861e-01	ci left: 5.157346e-02	ci right 6.068728e-02	k: 560	n:10000
KS ci ratio: 1.036624e-01	ci left: 1.185779e-01	ci right 1.316413e-01	k: 1250	n:10000
RASGEF1B   10000 perm   2 sec   (5067 perm/sec)   p_kst 1.250000e-01   p_cons 5.600000e-02   p_joint 1.291000e-01

Joint ci ratio: 1.424100e-01	ci left: 3.389529e-02	ci right 3.914057e-02	k: 729	n:20000
Cons ci ratio: 1.116030e-01	ci left: 5.484866e-02	ci right 6.138055e-02	k: 1161	n:20000
KS ci ratio: 7.326820e-02	ci left: 1.205939e-01	ci right 1.298153e-01	k: 2503	n:20000
RASGEF1B   20000 perm   4 sec   (4666 perm/sec)   p_kst 1.251500e-01   p_cons 5.805000e-02   p_joint 3.645000e-02

Joint ci ratio: 8.104870e-02	ci left: 6.939423e-02	ci right 7.528892e-02	k: 2169	n:30000
Cons ci ratio: 9.000558e-02	ci left: 5.678398e-02	ci right 6.216840e-02	k: 1783	n:30000
KS ci ratio: 5.801856e-02	ci left: 1.282217e-01	ci right 1.359164e-01	k: 3961	n:30000
RASGEF1B   30000 perm   7 sec   (4537 perm/sec)   p_kst 1.320333e-01   p_cons 5.943333e-02   p_joint 7.230000e-02

Outputting figure to mutsig2_images.part000000000143/RASGEF1B.3_1474_30000_0.13203_0.059433_0.0723.png
                gene_name: RASGEF1B
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.059 
      ci_cons_bounds_left: 0.057 
     ci_cons_bounds_right: 0.062 
                  p_joint: 0.072 
     ci_joint_bounds_left: 0.069 
    ci_joint_bounds_right: 0.075 

Current progress: 75 percent done.
RAD51L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.682928e-02	ci left: 8.371455e-01	ci right 8.514533e-01	k: 8444	n:10000
Cons ci ratio: 5.196217e-02	ci left: 3.531686e-01	ci right 3.721115e-01	k: 3626	n:10000
KS ci ratio: 6.981304e-02	ci left: 2.312609e-01	ci right 2.480910e-01	k: 2396	n:10000
RAD51L1   10000 perm   2 sec   (5464 perm/sec)   p_kst 2.396000e-01   p_cons 3.626000e-01   p_joint 8.444000e-01

Outputting figure to mutsig2_images.part000000000143/RAD51L1.2_1237_10000_0.2396_0.3626_0.8444.png
                gene_name: RAD51L1
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 77 percent done.
RAD9A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.408683e-01	ci left: 2.268733e-02	ci right 2.899301e-02	k: 257	n:10000
Cons ci ratio: 1.052552e-01	ci left: 1.153530e-01	ci right 1.282683e-01	k: 1217	n:10000
KS ci ratio: 2.772291e-01	ci left: 1.688052e-02	ci right 2.240432e-02	k: 195	n:10000
RAD9A   10000 perm   2 sec   (4776 perm/sec)   p_kst 1.950000e-02   p_cons 1.217000e-01   p_joint 2.570000e-02

Joint ci ratio: 8.013786e-02	ci left: 1.025519e-01	ci right 1.111628e-01	k: 2136	n:20000
Cons ci ratio: 7.250885e-02	ci left: 1.228577e-01	ci right 1.321509e-01	k: 2549	n:20000
KS ci ratio: 1.968048e-01	ci left: 1.753359e-02	ci right 2.140790e-02	k: 388	n:20000
RAD9A   20000 perm   4 sec   (4969 perm/sec)   p_kst 1.940000e-02   p_cons 1.274500e-01   p_joint 1.068000e-01

Joint ci ratio: 5.252870e-02	ci left: 1.524383e-01	ci right 1.606950e-01	k: 4696	n:30000
Cons ci ratio: 5.910621e-02	ci left: 1.240744e-01	ci right 1.316645e-01	k: 3835	n:30000
KS ci ratio: 1.633527e-01	ci left: 1.729317e-02	ci right 2.040101e-02	k: 564	n:30000
RAD9A   30000 perm   7 sec   (4600 perm/sec)   p_kst 1.880000e-02   p_cons 1.278333e-01   p_joint 1.565333e-01

Joint ci ratio: 4.568896e-02	ci left: 1.518623e-01	ci right 1.589878e-01	k: 6216	n:40000
Cons ci ratio: 5.155036e-02	ci left: 1.230346e-01	ci right 1.295697e-01	k: 5051	n:40000
KS ci ratio: 1.395299e-01	ci left: 1.799839e-02	ci right 2.072202e-02	k: 773	n:40000
RAD9A   40000 perm   9 sec   (4398 perm/sec)   p_kst 1.932500e-02   p_cons 1.262750e-01   p_joint 1.554000e-01

Joint ci ratio: 4.856504e-02	ci left: 1.124733e-01	ci right 1.180914e-01	k: 5763	n:50000
Cons ci ratio: 4.603307e-02	ci left: 1.237367e-01	ci right 1.295867e-01	k: 6332	n:50000
KS ci ratio: 1.263056e-01	ci left: 1.770504e-02	ci right 2.011128e-02	k: 944	n:50000
RAD9A   50000 perm   11 sec   (4449 perm/sec)   p_kst 1.888000e-02   p_cons 1.266400e-01   p_joint 1.152600e-01

Joint ci ratio: 6.238039e-02	ci left: 5.982050e-02	ci right 6.368869e-02	k: 3704	n:60000
Cons ci ratio: 4.194523e-02	ci left: 1.243950e-01	ci right 1.297411e-01	k: 7623	n:60000
KS ci ratio: 1.140766e-01	ci left: 1.819794e-02	ci right 2.041557e-02	k: 1157	n:60000
RAD9A   60000 perm   14 sec   (4444 perm/sec)   p_kst 1.928333e-02   p_cons 1.270500e-01   p_joint 6.173333e-02

Joint ci ratio: 5.774952e-02	ci left: 5.997090e-02	ci right 6.355125e-02	k: 4322	n:70000
Cons ci ratio: 3.881544e-02	ci left: 1.246975e-01	ci right 1.296477e-01	k: 8901	n:70000
KS ci ratio: 1.056943e-01	ci left: 1.825191e-02	ci right 2.030250e-02	k: 1348	n:70000
RAD9A   70000 perm   16 sec   (4433 perm/sec)   p_kst 1.925714e-02   p_cons 1.271571e-01   p_joint 6.174286e-02

Joint ci ratio: 3.067373e-02	ci left: 1.669307e-01	ci right 1.721433e-01	k: 13562	n:80000
Cons ci ratio: 3.630592e-02	ci left: 1.248736e-01	ci right 1.295035e-01	k: 10174	n:80000
KS ci ratio: 9.898969e-02	ci left: 1.827249e-02	ci right 2.018760e-02	k: 1537	n:80000
RAD9A   80000 perm   18 sec   (4398 perm/sec)   p_kst 1.921250e-02   p_cons 1.271750e-01   p_joint 1.695250e-01

Outputting figure to mutsig2_images.part000000000143/RAD9A.2_1220_80000_0.019213_0.12718_0.16953.png
                gene_name: RAD9A
               theta_stop: 0.099 
                    nperm: 80000 
                     p_ks: 0.019 
        ci_ks_bounds_left: 0.018 
       ci_ks_bounds_right: 0.020 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.17 

Current progress: 79 percent done.
RAE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.553891e-02	ci left: 6.929276e-01	ci right 7.109546e-01	k: 7020	n:10000
Cons ci ratio: 5.027449e-02	ci left: 3.684831e-01	ci right 3.875880e-01	k: 3780	n:10000
KS ci ratio: 2.700042e-02	ci left: 6.689428e-01	ci right 6.873533e-01	k: 6782	n:10000
RAE1   10000 perm   2 sec   (6538 perm/sec)   p_kst 6.782000e-01   p_cons 3.780000e-01   p_joint 7.020000e-01

Outputting figure to mutsig2_images.part000000000143/RAE1.2_1151_10000_0.6782_0.378_0.702.png
                gene_name: RAE1
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 81 percent done.
RALY
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.237835e-02	ci left: 7.456379e-01	ci right 7.626138e-01	k: 7542	n:10000
Cons ci ratio: 7.566438e-02	ci left: 2.035310e-01	ci right 2.196374e-01	k: 2115	n:10000
KS ci ratio: 2.010768e-02	ci left: 7.836063e-01	ci right 7.996234e-01	k: 7917	n:10000
RALY   10000 perm   1 sec   (6759 perm/sec)   p_kst 7.917000e-01   p_cons 2.115000e-01   p_joint 7.542000e-01

Outputting figure to mutsig2_images.part000000000143/RALY.2_949_10000_0.7917_0.2115_0.7542.png
                gene_name: RALY
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.76 

Current progress: 83 percent done.
RANBP3L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.979647e-02	ci left: 7.887776e-01	ci right 8.046492e-01	k: 7968	n:10000
Cons ci ratio: 2.268002e-02	ci left: 7.405823e-01	ci right 7.576724e-01	k: 7492	n:10000
KS ci ratio: 2.955063e-02	ci left: 6.280896e-01	ci right 6.470302e-01	k: 6376	n:10000
RANBP3L   10000 perm   2 sec   (6224 perm/sec)   p_kst 6.376000e-01   p_cons 7.492000e-01   p_joint 7.968000e-01

Outputting figure to mutsig2_images.part000000000143/RANBP3L.2_1533_10000_0.6376_0.7492_0.7968.png
                gene_name: RANBP3L
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 85 percent done.
RANBP9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.521613e-02	ci left: 2.566662e-01	ci right 2.740706e-01	k: 2653	n:10000
KS ci ratio: 1.089155e-02	ci left: 9.231709e-01	ci right 9.333780e-01	k: 9284	n:10000
RANBP9   10000 perm   2 sec   (6034 perm/sec)   p_kst 9.284000e-01   p_cons 2.653000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000143/RANBP9.2_2246_10000_0.9284_0.2653_1.png
                gene_name: RANBP9
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
RAP1GAP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.083799e-01	ci left: 1.344771e-02	ci right 1.844006e-02	k: 158	n:10000
Cons ci ratio: 6.805859e-02	ci left: 2.405485e-01	ci right 2.575979e-01	k: 2490	n:10000
KS ci ratio: 4.002490e-01	ci left: 7.602648e-03	ci right 1.149110e-02	k: 94	n:10000
RAP1GAP   10000 perm   2 sec   (5959 perm/sec)   p_kst 9.400000e-03   p_cons 2.490000e-01   p_joint 1.580000e-02

Joint ci ratio: 3.559085e-02	ci left: 3.707749e-01	ci right 3.842607e-01	k: 7550	n:20000
Cons ci ratio: 4.841629e-02	ci left: 2.408368e-01	ci right 2.528369e-01	k: 4936	n:20000
KS ci ratio: 2.771931e-01	ci left: 8.527942e-03	ci right 1.131731e-02	k: 197	n:20000
RAP1GAP   20000 perm   4 sec   (5372 perm/sec)   p_kst 9.850000e-03   p_cons 2.468000e-01   p_joint 3.775000e-01

Joint ci ratio: 1.411425e-01	ci left: 2.329494e-02	ci right 2.686451e-02	k: 751	n:30000
Cons ci ratio: 3.989488e-02	ci left: 2.385854e-01	ci right 2.483310e-01	k: 7303	n:30000
KS ci ratio: 2.302770e-01	ci left: 8.464779e-03	ci right 1.069841e-02	k: 286	n:30000
RAP1GAP   30000 perm   6 sec   (5112 perm/sec)   p_kst 9.533333e-03   p_cons 2.434333e-01   p_joint 2.503333e-02

Joint ci ratio: 3.405476e-02	ci left: 2.445692e-01	ci right 2.530673e-01	k: 9952	n:40000
Cons ci ratio: 3.447905e-02	ci left: 2.399961e-01	ci right 2.484411e-01	k: 9768	n:40000
KS ci ratio: 1.988155e-01	ci left: 8.667670e-03	ci right 1.060452e-02	k: 384	n:40000
RAP1GAP   40000 perm   8 sec   (4964 perm/sec)   p_kst 9.600000e-03   p_cons 2.442000e-01   p_joint 2.488000e-01

Joint ci ratio: 5.870273e-02	ci left: 7.947133e-02	ci right 8.429735e-02	k: 4093	n:50000
Cons ci ratio: 3.095349e-02	ci left: 2.390865e-01	ci right 2.466234e-01	k: 12142	n:50000
KS ci ratio: 1.778731e-01	ci left: 8.763884e-03	ci right 1.049376e-02	k: 480	n:50000
RAP1GAP   50000 perm   10 sec   (4845 perm/sec)   p_kst 9.600000e-03   p_cons 2.428400e-01   p_joint 8.186000e-02

Joint ci ratio: 5.346845e-02	ci left: 8.001414e-02	ci right 8.442637e-02	k: 4932	n:60000
Cons ci ratio: 2.821002e-02	ci left: 2.400202e-01	ci right 2.469047e-01	k: 14607	n:60000
KS ci ratio: 1.638435e-01	ci left: 8.675324e-03	ci right 1.023934e-02	k: 566	n:60000
RAP1GAP   60000 perm   13 sec   (4737 perm/sec)   p_kst 9.433333e-03   p_cons 2.434500e-01   p_joint 8.220000e-02

Joint ci ratio: 5.708393e-02	ci left: 6.130980e-02	ci right 6.492652e-02	k: 4417	n:70000
Cons ci ratio: 2.661261e-02	ci left: 2.334555e-01	ci right 2.397664e-01	k: 16562	n:70000
KS ci ratio: 1.514012e-01	ci left: 8.767145e-03	ci right 1.021681e-02	k: 663	n:70000
RAP1GAP   70000 perm   15 sec   (4636 perm/sec)   p_kst 9.471429e-03   p_cons 2.366000e-01   p_joint 6.310000e-02

Joint ci ratio: 5.334161e-02	ci left: 6.154819e-02	ci right 6.493357e-02	k: 5058	n:80000
Cons ci ratio: 2.488103e-02	ci left: 2.338450e-01	ci right 2.397491e-01	k: 18943	n:80000
KS ci ratio: 1.423690e-01	ci left: 8.718794e-03	ci right 1.006714e-02	k: 750	n:80000
RAP1GAP   80000 perm   18 sec   (4546 perm/sec)   p_kst 9.375000e-03   p_cons 2.367875e-01   p_joint 6.322500e-02

Joint ci ratio: 5.974805e-02	ci left: 4.427903e-02	ci right 4.701701e-02	k: 4107	n:90000
Cons ci ratio: 2.299526e-02	ci left: 2.412632e-01	ci right 2.468867e-01	k: 21966	n:90000
KS ci ratio: 1.335010e-01	ci left: 8.855059e-03	ci right 1.013241e-02	k: 853	n:90000
RAP1GAP   90000 perm   20 sec   (4462 perm/sec)   p_kst 9.477778e-03   p_cons 2.440667e-01   p_joint 4.563333e-02

Joint ci ratio: 4.010138e-02	ci left: 8.546828e-02	ci right 8.897570e-02	k: 8721	n:100000
Cons ci ratio: 2.180033e-02	ci left: 2.416593e-01	ci right 2.469955e-01	k: 24432	n:100000
KS ci ratio: 1.248617e-01	ci left: 9.150244e-03	ci right 1.037844e-02	k: 975	n:100000
RAP1GAP   100000 perm   23 sec   (4385 perm/sec)   p_kst 9.750000e-03   p_cons 2.443200e-01   p_joint 8.721000e-02

Joint ci ratio: 3.822034e-02	ci left: 8.561121e-02	ci right 8.895604e-02	k: 9600	n:110000
Cons ci ratio: 2.081362e-02	ci left: 2.412920e-01	ci right 2.463760e-01	k: 26821	n:110000
KS ci ratio: 1.186388e-01	ci left: 9.243916e-03	ci right 1.041851e-02	k: 1080	n:110000
RAP1GAP   110000 perm   26 sec   (4309 perm/sec)   p_kst 9.818182e-03   p_cons 2.438273e-01   p_joint 8.727273e-02

Joint ci ratio: 3.669659e-02	ci left: 8.523768e-02	ci right 8.843232e-02	k: 10419	n:120000
Cons ci ratio: 1.997238e-02	ci left: 2.405754e-01	ci right 2.454370e-01	k: 29160	n:120000
KS ci ratio: 1.137964e-01	ci left: 9.234152e-03	ci right 1.035640e-02	k: 1174	n:120000
RAP1GAP   120000 perm   28 sec   (4232 perm/sec)   p_kst 9.783333e-03   p_cons 2.430000e-01   p_joint 8.682500e-02

Joint ci ratio: 3.529178e-02	ci left: 8.514521e-02	ci right 8.821172e-02	k: 11267	n:130000
Cons ci ratio: 1.918446e-02	ci left: 2.407548e-01	ci right 2.454259e-01	k: 31601	n:130000
KS ci ratio: 1.095896e-01	ci left: 9.211751e-03	ci right 1.028721e-02	k: 1266	n:130000
RAP1GAP   130000 perm   31 sec   (4157 perm/sec)   p_kst 9.738462e-03   p_cons 2.430846e-01   p_joint 8.666923e-02

Joint ci ratio: 3.396172e-02	ci left: 8.541527e-02	ci right 8.837329e-02	k: 12164	n:140000
Cons ci ratio: 1.848587e-02	ci left: 2.408548e-01	ci right 2.453558e-01	k: 34034	n:140000
KS ci ratio: 1.052711e-01	ci left: 9.290590e-03	ci right 1.032986e-02	k: 1372	n:140000
RAP1GAP   140000 perm   34 sec   (4088 perm/sec)   p_kst 9.800000e-03   p_cons 2.431000e-01   p_joint 8.688571e-02

Joint ci ratio: 3.286253e-02	ci left: 8.521447e-02	ci right 8.806820e-02	k: 12995	n:150000
Cons ci ratio: 1.786910e-02	ci left: 2.407248e-01	ci right 2.450718e-01	k: 36434	n:150000
KS ci ratio: 1.023383e-01	ci left: 9.190680e-03	ci right 1.018841e-02	k: 1452	n:150000
RAP1GAP   150000 perm   37 sec   (4021 perm/sec)   p_kst 9.680000e-03   p_cons 2.428933e-01   p_joint 8.663333e-02

Joint ci ratio: 3.181073e-02	ci left: 8.530074e-02	ci right 8.806426e-02	k: 13868	n:160000
Cons ci ratio: 1.731846e-02	ci left: 2.404389e-01	ci right 2.446455e-01	k: 38806	n:160000
KS ci ratio: 9.844499e-02	ci left: 9.329187e-03	ci right 1.030120e-02	k: 1569	n:160000
RAP1GAP   160000 perm   40 sec   (3958 perm/sec)   p_kst 9.806250e-03   p_cons 2.425375e-01   p_joint 8.667500e-02

Outputting figure to mutsig2_images.part000000000143/RAP1GAP.2_2362_160000_0.0098063_0.24254_0.086675.png
                gene_name: RAP1GAP
               theta_stop: 0.098 
                    nperm: 160000 
                     p_ks: 0.0098 
        ci_ks_bounds_left: 0.0093 
       ci_ks_bounds_right: 0.010 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.087 
     ci_joint_bounds_left: 0.085 
    ci_joint_bounds_right: 0.088 

Current progress: 90 percent done.
RAP1GDS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.187869e-01	ci left: 9.233774e-02	ci right 1.040975e-01	k: 981	n:10000
KS ci ratio: 6.348859e-02	ci left: 2.671559e-01	ci right 2.847748e-01	k: 2759	n:10000
RAP1GDS1   10000 perm   2 sec   (6431 perm/sec)   p_kst 2.759000e-01   p_cons 9.810000e-02   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 8.366637e-02	ci left: 9.474715e-02	ci right 1.030699e-01	k: 1977	n:20000
KS ci ratio: 4.501172e-02	ci left: 2.687205e-01	ci right 2.811450e-01	k: 5498	n:20000
RAP1GDS1   20000 perm   3 sec   (5751 perm/sec)   p_kst 2.749000e-01   p_cons 9.885000e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000143/RAP1GDS1.2_1887_20000_0.2749_0.09885_1.png
                gene_name: RAP1GDS1
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.099 
      ci_cons_bounds_left: 0.095 
     ci_cons_bounds_right: 0.10 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
RAPGEF6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.134068e-02	ci left: 6.003594e-01	ci right 6.195765e-01	k: 6100	n:10000
KS ci ratio: 4.943000e-02	ci left: 3.764427e-01	ci right 3.956238e-01	k: 3860	n:10000
RAPGEF6   10000 perm   2 sec   (5093 perm/sec)   p_kst 3.860000e-01   p_cons 6.100000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000143/RAPGEF6.2_5404_10000_0.386_0.61_1.png
                gene_name: RAPGEF6
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
RARS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.090022e-02	ci left: 3.627141e-01	ci right 3.817604e-01	k: 3722	n:10000
Cons ci ratio: 2.331969e-02	ci left: 7.298693e-01	ci right 7.471916e-01	k: 7386	n:10000
KS ci ratio: 8.203014e-02	ci left: 1.782191e-01	ci right 1.935643e-01	k: 1858	n:10000
RARS2   10000 perm   2 sec   (6287 perm/sec)   p_kst 1.858000e-01   p_cons 7.386000e-01   p_joint 3.722000e-01

Outputting figure to mutsig2_images.part000000000143/RARS2.2_1817_10000_0.1858_0.7386_0.3722.png
                gene_name: RARS2
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 96 percent done.
RASD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.904642e-02	ci left: 3.801249e-01	ci right 3.993394e-01	k: 3897	n:10000
Cons ci ratio: 7.170281e-02	ci left: 2.217814e-01	ci right 2.383761e-01	k: 2300	n:10000
KS ci ratio: 2.793293e-02	ci left: 6.538404e-01	ci right 6.724645e-01	k: 6632	n:10000
RASD1   10000 perm   1 sec   (6779 perm/sec)   p_kst 6.632000e-01   p_cons 2.300000e-01   p_joint 3.897000e-01

Outputting figure to mutsig2_images.part000000000143/RASD1.2_854_10000_0.6632_0.23_0.3897.png
                gene_name: RASD1
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 98 percent done.
RASGEF1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.255649e-02	ci left: 9.011385e-01	ci right 9.126232e-01	k: 9070	n:10000
Cons ci ratio: 1.160350e-02	ci left: 9.139945e-01	ci right 9.247597e-01	k: 9195	n:10000
KS ci ratio: 3.615328e-02	ci left: 5.304715e-01	ci right 5.501050e-01	k: 5403	n:10000
RASGEF1A   10000 perm   2 sec   (6565 perm/sec)   p_kst 5.403000e-01   p_cons 9.195000e-01   p_joint 9.070000e-01

Outputting figure to mutsig2_images.part000000000143/RASGEF1A.2_1494_10000_0.5403_0.9195_0.907.png
                gene_name: RASGEF1A
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000143
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 143 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1701>
Subject: Job 8004481: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1701>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000144> was used as the working directory.
Started at Sun Nov 11 15:15:15 2012
Results reported at Sun Nov 11 15:39:56 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000144.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000144.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 144  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000144.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1547.15 sec.
    Max Memory :      4643 MB
    Max Swap   :      7128 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
144
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 144
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 144: processing genes 12938 - 13028
Calculating significance of each gene.
Using projection method.
12938	RASGRF2	8.379392e-01
12939	RASGRP1	9.237490e-01
12940	RASGRP2	7.499026e-01
12941	RASGRP3	2.898881e-02
12942	RASGRP4	1.430883e-01
12943	RASIP1	6.088837e-01
12944	RASL10A	1
12945	RASL10B	2.764008e-01
12946	RASL11A	3.136222e-01
12947	RASL11B	1
12948	RASL12	1
12949	RASSF1	1
12950	RASSF10	4.913686e-01
12951	RASSF2	1
12952	RASSF3	1
12953	RASSF4	1
12954	RASSF5	5.384949e-01
12955	RASSF6	7.574565e-01
12956	RASSF7	7.546921e-02
12957	RASSF8	7.766888e-02
12958	RASSF9	5.846872e-03
12959	RAVER1	2.856744e-01
12960	RAVER2	6.125889e-01
12961	RAX	3.155103e-01
12962	RAX2	1.798981e-01
12963	RB1	2.311959e-05
12964	RB1CC1	9.673533e-01
12965	RBAK	1
12966	RBBP4	8.650240e-01
12967	RBBP5	8.720144e-01
12968	RBBP6	9.641837e-01
12969	RBBP7	1
12970	RBBP8	9.761254e-01
12971	RBBP9	1
12972	RBCK1	6.698823e-01
12973	RBKS	5.818302e-01
12974	RBL1	4.322692e-01
12975	RBL2	1.370519e-01
12976	RBM10	6.429880e-01
12977	RBM11	1.108318e-02
12978	RBM12	4.503956e-01
12979	RBM12B	8.851061e-01
12980	RBM14	8.678942e-01
12981	RBM15	9.544290e-01
12982	RBM15B	9.069835e-01
12983	RBM16	1
12984	RBM17	7.192761e-01
12985	RBM18	1
12986	RBM19	9.044042e-01
12987	RBM22	4.436403e-01
12988	RBM23	1
12989	RBM24	1
12990	RBM25	7.679330e-01
12991	RBM26	9.448918e-01
12992	RBM27	8.907747e-01
12993	RBM28	1
12994	RBM3	2.020798e-01
12995	RBM33	8.834841e-01
12996	RBM34	1
12997	RBM38	6.324680e-02
12998	RBM39	7.088529e-01
12999	RBM4	8.025690e-01
13000/18094 13000	RBM41	5.936695e-01
13001	RBM42	4.663062e-01
13002	RBM43	5.041588e-01
13003	RBM44	9.802438e-01
13004	RBM45	1
13005	RBM46	8.858025e-01
13006	RBM47	6.976623e-01
13007	RBM4B	7.642760e-01
13008	RBM5	8.439804e-01
13009	RBM6	8.411362e-01
13010	RBM7	1
13011	RBM8A	1.714826e-01
13012	RBM9	4.274491e-01
13013	RBMS1	3.620671e-01
13014	RBMS2	3.634471e-01
13015	RBMS3	8.328002e-01
13016	RBMX	2.943889e-02
13017	RBMX2	6.663816e-01
13018	RBMXL1	2.309115e-01
13019	RBMXL2	1.171186e-01
13020	RBP1	4.556562e-01
13021	RBP2	6.589884e-02
13022	RBP3	8.729417e-01
13023	RBP4	2.083454e-01
13024	RBP5	1
13025	RBP7	1
13026	RBPJ	1
13027	RBPJL	1
13028	RBPMS	1
Done

Running MutSig 2:
Scatter job 144: processing genes 12938 - 13028
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
RB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.669991e-02	ci left: 1.990953e-01	ci right 2.150757e-01	k: 2070	n:10000
Cons ci ratio: 3.088156e-02	ci left: 6.073893e-01	ci right 6.265425e-01	k: 6170	n:10000
KS ci ratio: 1.135382e-01	ci left: 1.004217e-01	ci right 1.126086e-01	k: 1064	n:10000
RB1   10000 perm   2 sec   (4449 perm/sec)   p_kst 1.064000e-01   p_cons 6.170000e-01   p_joint 2.070000e-01

Joint ci ratio: 5.574148e-02	ci left: 1.926944e-01	ci right 2.037935e-01	k: 3964	n:20000
Cons ci ratio: 2.192090e-02	ci left: 6.084156e-01	ci right 6.219509e-01	k: 12304	n:20000
KS ci ratio: 8.135796e-02	ci left: 9.975307e-02	ci right 1.082624e-01	k: 2079	n:20000
RB1   20000 perm   7 sec   (2797 perm/sec)   p_kst 1.039500e-01   p_cons 6.152000e-01   p_joint 1.982000e-01

Outputting figure to mutsig2_images.part000000000144/RB1.12_2895_20000_0.10395_0.6152_0.1982.png
                gene_name: RB1
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.100 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 2 percent done.
RBP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.125218e-01	ci left: 2.939568e-02	ci right 3.647982e-02	k: 328	n:10000
Cons ci ratio: 9.969303e-02	ci left: 1.271849e-01	ci right 1.406292e-01	k: 1338	n:10000
KS ci ratio: 1.302908e-01	ci left: 7.756782e-02	ci right 8.847654e-02	k: 829	n:10000
RBP3   10000 perm   2 sec   (4690 perm/sec)   p_kst 8.290000e-02   p_cons 1.338000e-01   p_joint 3.280000e-02

Joint ci ratio: 1.222419e-01	ci left: 4.590339e-02	ci right 5.192862e-02	k: 977	n:20000
Cons ci ratio: 7.020755e-02	ci left: 1.300953e-01	ci right 1.396111e-01	k: 2696	n:20000
KS ci ratio: 9.088334e-02	ci left: 8.121946e-02	ci right 8.900166e-02	k: 1701	n:20000
RBP3   20000 perm   5 sec   (4233 perm/sec)   p_kst 8.505000e-02   p_cons 1.348000e-01   p_joint 4.885000e-02

Joint ci ratio: 1.079984e-01	ci left: 3.979041e-02	ci right 4.436547e-02	k: 1261	n:30000
Cons ci ratio: 5.684233e-02	ci left: 1.329301e-01	ci right 1.407404e-01	k: 4104	n:30000
KS ci ratio: 7.509403e-02	ci left: 8.013130e-02	ci right 8.641635e-02	k: 2497	n:30000
RBP3   30000 perm   7 sec   (4069 perm/sec)   p_kst 8.323333e-02   p_cons 1.368000e-01   p_joint 4.203333e-02

Joint ci ratio: 8.793834e-02	ci left: 4.524012e-02	ci right 4.942591e-02	k: 1892	n:40000
Cons ci ratio: 4.940671e-02	ci left: 1.326053e-01	ci right 1.393477e-01	k: 5438	n:40000
KS ci ratio: 6.664742e-02	ci left: 7.694092e-02	ci right 8.227030e-02	k: 3183	n:40000
RBP3   40000 perm   10 sec   (3956 perm/sec)   p_kst 7.957500e-02   p_cons 1.359500e-01   p_joint 4.730000e-02

Outputting figure to mutsig2_images.part000000000144/RBP3.9_3760_40000_0.079575_0.13595_0.0473.png
                gene_name: RBP3
               theta_stop: 0.088 
                    nperm: 40000 
                     p_ks: 0.080 
        ci_ks_bounds_left: 0.077 
       ci_ks_bounds_right: 0.082 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.047 
     ci_joint_bounds_left: 0.045 
    ci_joint_bounds_right: 0.049 

Current progress: 5 percent done.
RASGRP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.081627e-02	ci left: 6.083937e-01	ci right 6.275375e-01	k: 6180	n:10000
Cons ci ratio: 3.931186e-02	ci left: 4.886519e-01	ci right 5.083490e-01	k: 4985	n:10000
KS ci ratio: 3.213000e-02	ci left: 5.884132e-01	ci right 6.077296e-01	k: 5981	n:10000
RASGRP3   10000 perm   2 sec   (4876 perm/sec)   p_kst 5.981000e-01   p_cons 4.985000e-01   p_joint 6.180000e-01

Outputting figure to mutsig2_images.part000000000144/RASGRP3.7_2137_10000_0.5981_0.4985_0.618.png
                gene_name: RASGRP3
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 8 percent done.
RBL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.325114e-02	ci left: 8.913891e-01	ci right 9.033783e-01	k: 8975	n:10000
KS ci ratio: 8.895760e-03	ci left: 9.466899e-01	ci right 9.552449e-01	k: 9511	n:10000
RBL2   10000 perm   2 sec   (4837 perm/sec)   p_kst 9.511000e-01   p_cons 8.975000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000144/RBL2.7_3508_10000_0.9511_0.8975_1.png
                gene_name: RBL2
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 10 percent done.
RASGRF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.353098e-01	ci left: 2.381734e-02	ci right 3.026216e-02	k: 269	n:10000
Cons ci ratio: 1.011330e+00	ci left: 7.655977e-04	ci right 2.347848e-03	k: 14	n:10000
KS ci ratio: 1.172054e-02	ci left: 9.124500e-01	ci right 9.233051e-01	k: 9180	n:10000
RASGRF2   10000 perm   2 sec   (4831 perm/sec)   p_kst 9.180000e-01   p_cons 1.400000e-03   p_joint 2.690000e-02

Joint ci ratio: 1.636116e-01	ci left: 2.561344e-02	ci right 3.022518e-02	k: 557	n:20000
Cons ci ratio: 7.538762e-01	ci left: 8.493734e-04	ci right 1.904225e-03	k: 26	n:20000
KS ci ratio: 8.247429e-03	ci left: 9.148262e-01	ci right 9.224515e-01	k: 18374	n:20000
RASGRF2   20000 perm   5 sec   (4362 perm/sec)   p_kst 9.187000e-01   p_cons 1.300000e-03   p_joint 2.785000e-02

Joint ci ratio: 1.197251e-01	ci left: 3.243089e-02	ci right 3.659322e-02	k: 1034	n:30000
Cons ci ratio: 5.839110e-01	ci left: 1.065878e-03	ci right 1.968437e-03	k: 44	n:30000
KS ci ratio: 6.694409e-03	ci left: 9.164317e-01	ci right 9.226201e-01	k: 27587	n:30000
RASGRF2   30000 perm   7 sec   (4102 perm/sec)   p_kst 9.195667e-01   p_cons 1.466667e-03   p_joint 3.446667e-02

Joint ci ratio: 1.454891e-01	ci left: 1.652682e-02	ci right 1.914384e-02	k: 712	n:40000
Cons ci ratio: 5.432460e-01	ci left: 9.494640e-04	ci right 1.676053e-03	k: 51	n:40000
KS ci ratio: 6.172917e-03	ci left: 9.069250e-01	ci right 9.125654e-01	k: 36391	n:40000
RASGRF2   40000 perm   10 sec   (3967 perm/sec)   p_kst 9.097750e-01   p_cons 1.275000e-03   p_joint 1.780000e-02

Joint ci ratio: 1.214804e-01	ci left: 1.915941e-02	ci right 2.165671e-02	k: 1019	n:50000
Cons ci ratio: 5.100343e-01	ci left: 8.809508e-04	ci right 1.499314e-03	k: 58	n:50000
KS ci ratio: 5.492669e-03	ci left: 9.080855e-01	ci right 9.131068e-01	k: 45531	n:50000
RASGRF2   50000 perm   13 sec   (3862 perm/sec)   p_kst 9.106200e-01   p_cons 1.160000e-03   p_joint 2.038000e-02

Joint ci ratio: 8.042820e-02	ci left: 3.654956e-02	ci right 3.962866e-02	k: 2284	n:60000
Cons ci ratio: 4.523559e-01	ci left: 9.685522e-04	ci right 1.548093e-03	k: 74	n:60000
KS ci ratio: 4.997699e-03	ci left: 9.088451e-01	ci right 9.134151e-01	k: 54669	n:60000
RASGRF2   60000 perm   16 sec   (3800 perm/sec)   p_kst 9.111500e-01   p_cons 1.233333e-03   p_joint 3.806667e-02

Joint ci ratio: 6.972731e-02	ci left: 4.169168e-02	ci right 4.471776e-02	k: 3023	n:70000
Cons ci ratio: 4.129356e-01	ci left: 1.021182e-03	ci right 1.564373e-03	k: 89	n:70000
KS ci ratio: 4.629584e-03	ci left: 9.089242e-01	ci right 9.131560e-01	k: 63774	n:70000
RASGRF2   70000 perm   19 sec   (3737 perm/sec)   p_kst 9.110571e-01   p_cons 1.271429e-03   p_joint 4.318571e-02

Joint ci ratio: 7.441311e-02	ci left: 3.227608e-02	ci right 3.478290e-02	k: 2681	n:80000
Cons ci ratio: 3.822993e-01	ci left: 1.062314e-03	ci right 1.574951e-03	k: 104	n:80000
KS ci ratio: 4.336751e-03	ci left: 9.088289e-01	ci right 9.127912e-01	k: 72866	n:80000
RASGRF2   80000 perm   22 sec   (3681 perm/sec)   p_kst 9.108250e-01   p_cons 1.300000e-03   p_joint 3.351250e-02

Joint ci ratio: 7.362781e-02	ci left: 2.940798e-02	ci right 3.166686e-02	k: 2747	n:90000
Cons ci ratio: 3.669070e-01	ci left: 1.034864e-03	ci right 1.509332e-03	k: 113	n:90000
KS ci ratio: 4.087379e-03	ci left: 9.089975e-01	ci right 9.127315e-01	k: 81979	n:90000
RASGRF2   90000 perm   25 sec   (3578 perm/sec)   p_kst 9.108778e-01   p_cons 1.255556e-03   p_joint 3.052222e-02

Joint ci ratio: 7.608174e-02	ci left: 2.487523e-02	ci right 2.685240e-02	k: 2585	n:100000
Cons ci ratio: 3.532353e-01	ci left: 1.013236e-03	ci right 1.456509e-03	k: 122	n:100000
KS ci ratio: 3.885913e-03	ci left: 9.087440e-01	ci right 9.122921e-01	k: 91053	n:100000
RASGRF2   100000 perm   28 sec   (3537 perm/sec)   p_kst 9.105300e-01   p_cons 1.220000e-03   p_joint 2.585000e-02

Joint ci ratio: 7.632478e-02	ci left: 2.252362e-02	ci right 2.431981e-02	k: 2575	n:110000
Cons ci ratio: 3.384286e-01	ci left: 1.012442e-03	ci right 1.432749e-03	k: 133	n:110000
KS ci ratio: 3.704502e-03	ci left: 9.088527e-01	ci right 9.122347e-01	k: 100161	n:110000
RASGRF2   110000 perm   32 sec   (3492 perm/sec)   p_kst 9.105545e-01   p_cons 1.209091e-03   p_joint 2.340909e-02

Joint ci ratio: 7.673657e-02	ci left: 2.046598e-02	ci right 2.210727e-02	k: 2553	n:120000
Cons ci ratio: 3.287630e-01	ci left: 9.891533e-04	ci right 1.385587e-03	k: 141	n:120000
KS ci ratio: 3.546155e-03	ci left: 9.089548e-01	ci right 9.121920e-01	k: 109270	n:120000
RASGRF2   120000 perm   35 sec   (3454 perm/sec)   p_kst 9.105833e-01   p_cons 1.175000e-03   p_joint 2.127500e-02

Joint ci ratio: 7.574861e-02	ci left: 1.941947e-02	ci right 2.095588e-02	k: 2623	n:130000
Cons ci ratio: 3.146730e-01	ci left: 1.004994e-03	ci right 1.387046e-03	k: 154	n:130000
KS ci ratio: 3.408288e-03	ci left: 9.089585e-01	ci right 9.120693e-01	k: 118368	n:130000
RASGRF2   130000 perm   38 sec   (3417 perm/sec)   p_kst 9.105231e-01   p_cons 1.184615e-03   p_joint 2.017692e-02

Joint ci ratio: 7.503571e-02	ci left: 1.840343e-02	ci right 1.984515e-02	k: 2676	n:140000
Cons ci ratio: 2.995857e-01	ci left: 1.038696e-03	ci right 1.411029e-03	k: 170	n:140000
KS ci ratio: 3.287645e-03	ci left: 9.088487e-01	ci right 9.118486e-01	k: 127450	n:140000
RASGRF2   140000 perm   41 sec   (3380 perm/sec)   p_kst 9.103571e-01   p_cons 1.214286e-03   p_joint 1.911429e-02

Joint ci ratio: 7.098245e-02	ci left: 1.921886e-02	ci right 2.063978e-02	k: 2988	n:150000
Cons ci ratio: 2.928187e-01	ci left: 1.018819e-03	ci right 1.374247e-03	k: 178	n:150000
KS ci ratio: 3.180385e-03	ci left: 9.086815e-01	ci right 9.115826e-01	k: 136521	n:150000
RASGRF2   150000 perm   45 sec   (3341 perm/sec)   p_kst 9.101400e-01   p_cons 1.186667e-03   p_joint 1.992000e-02

Joint ci ratio: 6.984616e-02	ci left: 1.863148e-02	ci right 1.998602e-02	k: 3088	n:160000
Cons ci ratio: 2.857265e-01	ci left: 1.007311e-03	ci right 1.348678e-03	k: 187	n:160000
KS ci ratio: 3.073669e-03	ci left: 9.090340e-01	ci right 9.118386e-01	k: 145671	n:160000
RASGRF2   160000 perm   48 sec   (3303 perm/sec)   p_kst 9.104437e-01   p_cons 1.168750e-03   p_joint 1.930000e-02

Joint ci ratio: 7.046972e-02	ci left: 1.724612e-02	ci right 1.851158e-02	k: 3038	n:170000
Cons ci ratio: 2.763312e-01	ci left: 1.019141e-03	ci right 1.351188e-03	k: 200	n:170000
KS ci ratio: 2.984950e-03	ci left: 9.089080e-01	ci right 9.116309e-01	k: 154747	n:170000
RASGRF2   170000 perm   52 sec   (3266 perm/sec)   p_kst 9.102765e-01   p_cons 1.176471e-03   p_joint 1.787059e-02

Joint ci ratio: 6.928624e-02	ci left: 1.686648e-02	ci right 1.808246e-02	k: 3144	n:180000
Cons ci ratio: 2.690674e-01	ci left: 1.019456e-03	ci right 1.341401e-03	k: 211	n:180000
KS ci ratio: 2.893221e-03	ci left: 9.093788e-01	ci right 9.120191e-01	k: 163927	n:180000
RASGRF2   180000 perm   56 sec   (3229 perm/sec)   p_kst 9.107056e-01   p_cons 1.172222e-03   p_joint 1.746667e-02

Joint ci ratio: 7.353296e-02	ci left: 1.419464e-02	ci right 1.528339e-02	k: 2799	n:190000
Cons ci ratio: 2.600234e-01	ci left: 1.039515e-03	ci right 1.354968e-03	k: 226	n:190000
KS ci ratio: 2.813596e-03	ci left: 9.095571e-01	ci right 9.121251e-01	k: 173061	n:190000
RASGRF2   190000 perm   60 sec   (3193 perm/sec)   p_kst 9.108474e-01   p_cons 1.189474e-03   p_joint 1.473158e-02

Joint ci ratio: 6.652414e-02	ci left: 1.649698e-02	ci right 1.763708e-02	k: 3412	n:200000
Cons ci ratio: 2.513147e-01	ci left: 1.062416e-03	ci right 1.372332e-03	k: 242	n:200000
KS ci ratio: 2.742982e-03	ci left: 9.095524e-01	ci right 9.120557e-01	k: 182162	n:200000
RASGRF2   200000 perm   63 sec   (3158 perm/sec)   p_kst 9.108100e-01   p_cons 1.210000e-03   p_joint 1.706000e-02

Joint ci ratio: 6.528935e-02	ci left: 1.632489e-02	ci right 1.743136e-02	k: 3543	n:210000
Cons ci ratio: 2.453303e-01	ci left: 1.065412e-03	ci right 1.367674e-03	k: 254	n:210000
KS ci ratio: 2.677353e-03	ci left: 9.095537e-01	ci right 9.119969e-01	k: 191264	n:210000
RASGRF2   210000 perm   67 sec   (3123 perm/sec)   p_kst 9.107810e-01   p_cons 1.209524e-03   p_joint 1.687143e-02

Joint ci ratio: 6.484223e-02	ci left: 1.581076e-02	ci right 1.687476e-02	k: 3594	n:220000
Cons ci ratio: 2.402047e-01	ci left: 1.063943e-03	ci right 1.358543e-03	k: 265	n:220000
KS ci ratio: 2.613731e-03	ci left: 9.097110e-01	ci right 9.120963e-01	k: 200400	n:220000
RASGRF2   220000 perm   71 sec   (3089 perm/sec)   p_kst 9.109091e-01   p_cons 1.204545e-03   p_joint 1.633636e-02

Joint ci ratio: 6.239042e-02	ci left: 1.634718e-02	ci right 1.740418e-02	k: 3880	n:230000
Cons ci ratio: 2.353876e-01	ci left: 1.062662e-03	ci right 1.350146e-03	k: 276	n:230000
KS ci ratio: 2.555051e-03	ci left: 9.098158e-01	ci right 9.121477e-01	k: 209527	n:230000
RASGRF2   230000 perm   75 sec   (3055 perm/sec)   p_kst 9.109870e-01   p_cons 1.200000e-03   p_joint 1.686957e-02

Joint ci ratio: 6.202402e-02	ci left: 1.586281e-02	ci right 1.688225e-02	k: 3928	n:240000
Cons ci ratio: 2.308491e-01	ci left: 1.061541e-03	ci right 1.342395e-03	k: 287	n:240000
KS ci ratio: 2.496873e-03	ci left: 9.101262e-01	ci right 9.124056e-01	k: 218705	n:240000
RASGRF2   240000 perm   79 sec   (3021 perm/sec)   p_kst 9.112708e-01   p_cons 1.195833e-03   p_joint 1.636667e-02

Joint ci ratio: 6.120338e-02	ci left: 1.564965e-02	ci right 1.664161e-02	k: 4035	n:250000
Cons ci ratio: 2.265634e-01	ci left: 1.060558e-03	ci right 1.335216e-03	k: 298	n:250000
KS ci ratio: 2.444954e-03	ci left: 9.102471e-01	ci right 9.124793e-01	k: 227842	n:250000
RASGRF2   250000 perm   84 sec   (2987 perm/sec)   p_kst 9.113680e-01   p_cons 1.192000e-03   p_joint 1.614000e-02

Joint ci ratio: 5.951558e-02	ci left: 1.592286e-02	ci right 1.690335e-02	k: 4266	n:260000
Cons ci ratio: 2.196878e-01	ci left: 1.088763e-03	ci right 1.361013e-03	k: 317	n:260000
KS ci ratio: 2.400023e-03	ci left: 9.100962e-01	ci right 9.122869e-01	k: 236911	n:260000
RASGRF2   260000 perm   88 sec   (2955 perm/sec)   p_kst 9.111962e-01   p_cons 1.219231e-03   p_joint 1.640769e-02

Joint ci ratio: 5.705085e-02	ci left: 1.669466e-02	ci right 1.767870e-02	k: 4639	n:270000
Cons ci ratio: 2.159845e-01	ci left: 1.086956e-03	ci right 1.353565e-03	k: 328	n:270000
KS ci ratio: 2.352891e-03	ci left: 9.102735e-01	ci right 9.124214e-01	k: 246065	n:270000
RASGRF2   270000 perm   92 sec   (2923 perm/sec)   p_kst 9.113519e-01   p_cons 1.214815e-03   p_joint 1.718148e-02

Joint ci ratio: 5.398576e-02	ci left: 1.798294e-02	ci right 1.898420e-02	k: 5174	n:280000
Cons ci ratio: 2.109153e-01	ci left: 1.102226e-03	ci right 1.365415e-03	k: 344	n:280000
KS ci ratio: 2.313071e-03	ci left: 9.101116e-01	ci right 9.122227e-01	k: 255128	n:280000
RASGRF2   280000 perm   97 sec   (2892 perm/sec)   p_kst 9.111714e-01   p_cons 1.228571e-03   p_joint 1.847857e-02

Joint ci ratio: 5.032096e-02	ci left: 1.998052e-02	ci right 2.101530e-02	k: 5943	n:290000
Cons ci ratio: 2.073403e-01	ci left: 1.103431e-03	ci right 1.361875e-03	k: 356	n:290000
KS ci ratio: 2.272244e-03	ci left: 9.101727e-01	ci right 9.122466e-01	k: 264252	n:290000
RASGRF2   290000 perm   101 sec   (2861 perm/sec)   p_kst 9.112138e-01   p_cons 1.227586e-03   p_joint 2.049310e-02

Joint ci ratio: 4.952439e-02	ci left: 1.994980e-02	ci right 2.096616e-02	k: 6136	n:300000
Cons ci ratio: 2.042184e-01	ci left: 1.101427e-03	ci right 1.355033e-03	k: 367	n:300000
KS ci ratio: 2.232999e-03	ci left: 9.102669e-01	ci right 9.123051e-01	k: 273387	n:300000
RASGRF2   300000 perm   106 sec   (2831 perm/sec)   p_kst 9.112900e-01   p_cons 1.223333e-03   p_joint 2.045333e-02

Joint ci ratio: 4.901007e-02	ci left: 1.972358e-02	ci right 2.071768e-02	k: 6267	n:310000
Cons ci ratio: 2.007039e-01	ci left: 1.105707e-03	ci right 1.355380e-03	k: 380	n:310000
KS ci ratio: 2.196551e-03	ci left: 9.102937e-01	ci right 9.122986e-01	k: 282503	n:310000
RASGRF2   310000 perm   111 sec   (2801 perm/sec)   p_kst 9.113000e-01   p_cons 1.225806e-03   p_joint 2.021613e-02

Joint ci ratio: 5.060503e-02	ci left: 1.794025e-02	ci right 1.887475e-02	k: 5889	n:320000
Cons ci ratio: 1.963693e-01	ci left: 1.121639e-03	ci right 1.368786e-03	k: 397	n:320000
KS ci ratio: 2.161874e-03	ci left: 9.103159e-01	ci right 9.122891e-01	k: 291618	n:320000
RASGRF2   320000 perm   115 sec   (2771 perm/sec)   p_kst 9.113062e-01   p_cons 1.240625e-03   p_joint 1.840312e-02

Joint ci ratio: 5.082184e-02	ci left: 1.725883e-02	ci right 1.816179e-02	k: 5843	n:330000
Cons ci ratio: 1.939486e-01	ci left: 1.116472e-03	ci right 1.359090e-03	k: 407	n:330000
KS ci ratio: 2.127830e-03	ci left: 9.104101e-01	ci right 9.123524e-01	k: 300757	n:330000
RASGRF2   330000 perm   120 sec   (2742 perm/sec)   p_kst 9.113848e-01   p_cons 1.233333e-03   p_joint 1.770606e-02

Joint ci ratio: 4.627367e-02	ci left: 2.019205e-02	ci right 2.115143e-02	k: 7027	n:340000
Cons ci ratio: 1.909305e-01	ci left: 1.120028e-03	ci right 1.359191e-03	k: 420	n:340000
KS ci ratio: 2.096337e-03	ci left: 9.104221e-01	ci right 9.123356e-01	k: 309870	n:340000
RASGRF2   340000 perm   125 sec   (2714 perm/sec)   p_kst 9.113824e-01   p_cons 1.235294e-03   p_joint 2.066765e-02

Joint ci ratio: 4.571994e-02	ci left: 2.010089e-02	ci right 2.104421e-02	k: 7199	n:350000
Cons ci ratio: 1.876167e-01	ci left: 1.128854e-03	ci right 1.365242e-03	k: 435	n:350000
KS ci ratio: 2.065799e-03	ci left: 9.104652e-01	ci right 9.123508e-01	k: 318994	n:350000
RASGRF2   350000 perm   130 sec   (2687 perm/sec)   p_kst 9.114114e-01   p_cons 1.242857e-03   p_joint 2.056857e-02

Joint ci ratio: 4.592893e-02	ci left: 1.937761e-02	ci right 2.029125e-02	k: 7139	n:360000
Cons ci ratio: 1.850871e-01	ci left: 1.129275e-03	ci right 1.362205e-03	k: 447	n:360000
KS ci ratio: 2.037610e-03	ci left: 9.104224e-01	ci right 9.122821e-01	k: 328088	n:360000
RASGRF2   360000 perm   135 sec   (2659 perm/sec)   p_kst 9.113556e-01   p_cons 1.241667e-03   p_joint 1.983056e-02

Joint ci ratio: 4.810602e-02	ci left: 1.720545e-02	ci right 1.805619e-02	k: 6522	n:370000
Cons ci ratio: 1.824586e-01	ci left: 1.132273e-03	ci right 1.362138e-03	k: 460	n:370000
KS ci ratio: 2.009265e-03	ci left: 9.104852e-01	ci right 9.123191e-01	k: 337220	n:370000
RASGRF2   370000 perm   141 sec   (2631 perm/sec)   p_kst 9.114054e-01   p_cons 1.243243e-03   p_joint 1.762703e-02

Joint ci ratio: 4.787895e-02	ci left: 1.691901e-02	ci right 1.775153e-02	k: 6586	n:380000
Cons ci ratio: 1.801293e-01	ci left: 1.132623e-03	ci right 1.359303e-03	k: 472	n:380000
KS ci ratio: 1.982071e-03	ci left: 9.105449e-01	ci right 9.123541e-01	k: 346352	n:380000
RASGRF2   380000 perm   146 sec   (2604 perm/sec)   p_kst 9.114526e-01   p_cons 1.242105e-03   p_joint 1.733158e-02

Joint ci ratio: 4.733723e-02	ci left: 1.687029e-02	ci right 1.769076e-02	k: 6738	n:390000
Cons ci ratio: 1.777038e-01	ci left: 1.135422e-03	ci right 1.359274e-03	k: 485	n:390000
KS ci ratio: 1.955329e-03	ci left: 9.106532e-01	ci right 9.124381e-01	k: 355504	n:390000
RASGRF2   390000 perm   151 sec   (2579 perm/sec)   p_kst 9.115487e-01   p_cons 1.243590e-03   p_joint 1.727692e-02

Joint ci ratio: 4.722305e-02	ci left: 1.653493e-02	ci right 1.733709e-02	k: 6773	n:400000
Cons ci ratio: 1.750228e-01	ci left: 1.142881e-03	ci right 1.364445e-03	k: 500	n:400000
KS ci ratio: 1.931346e-03	ci left: 9.106131e-01	ci right 9.123760e-01	k: 364599	n:400000
RASGRF2   400000 perm   157 sec   (2554 perm/sec)   p_kst 9.114975e-01   p_cons 1.250000e-03   p_joint 1.693250e-02

Joint ci ratio: 4.709531e-02	ci left: 1.622558e-02	ci right 1.701055e-02	k: 6812	n:410000
Cons ci ratio: 1.729637e-01	ci left: 1.143000e-03	ci right 1.361708e-03	k: 512	n:410000
KS ci ratio: 1.907214e-03	ci left: 9.106608e-01	ci right 9.124017e-01	k: 373729	n:410000
RASGRF2   410000 perm   162 sec   (2530 perm/sec)   p_kst 9.115341e-01   p_cons 1.248780e-03   p_joint 1.661463e-02

Joint ci ratio: 4.560694e-02	ci left: 1.689133e-02	ci right 1.768201e-02	k: 7259	n:420000
Cons ci ratio: 1.713027e-01	ci left: 1.138569e-03	ci right 1.354121e-03	k: 522	n:420000
KS ci ratio: 1.883045e-03	ci left: 9.107853e-01	ci right 9.125043e-01	k: 382892	n:420000
RASGRF2   420000 perm   168 sec   (2506 perm/sec)   p_kst 9.116476e-01   p_cons 1.242857e-03   p_joint 1.728333e-02

Joint ci ratio: 4.581890e-02	ci left: 1.635357e-02	ci right 1.712273e-02	k: 7196	n:430000
Cons ci ratio: 1.688972e-01	ci left: 1.145490e-03	ci right 1.358996e-03	k: 537	n:430000
KS ci ratio: 1.861302e-03	ci left: 9.107709e-01	ci right 9.124700e-01	k: 391998	n:430000
RASGRF2   430000 perm   173 sec   (2482 perm/sec)   p_kst 9.116233e-01   p_cons 1.248837e-03   p_joint 1.673488e-02

Joint ci ratio: 4.525891e-02	ci left: 1.638409e-02	ci right 1.714502e-02	k: 7375	n:440000
Cons ci ratio: 1.664398e-01	ci left: 1.154294e-03	ci right 1.365998e-03	k: 553	n:440000
KS ci ratio: 1.839593e-03	ci left: 9.108190e-01	ci right 9.124983e-01	k: 401131	n:440000
RASGRF2   440000 perm   179 sec   (2457 perm/sec)   p_kst 9.116614e-01   p_cons 1.256818e-03   p_joint 1.676136e-02

Joint ci ratio: 4.465588e-02	ci left: 1.645946e-02	ci right 1.721344e-02	k: 7575	n:450000
Cons ci ratio: 1.642308e-01	ci left: 1.160598e-03	ci right 1.370353e-03	k: 568	n:450000
KS ci ratio: 1.819832e-03	ci left: 9.107579e-01	ci right 9.124190e-01	k: 410216	n:450000
RASGRF2   450000 perm   185 sec   (2434 perm/sec)   p_kst 9.115911e-01   p_cons 1.262222e-03   p_joint 1.683333e-02

Joint ci ratio: 4.359409e-02	ci left: 1.689720e-02	ci right 1.765237e-02	k: 7945	n:460000
Cons ci ratio: 1.626663e-01	ci left: 1.158302e-03	ci right 1.365453e-03	k: 579	n:460000
KS ci ratio: 1.799576e-03	ci left: 9.108000e-01	ci right 9.124427e-01	k: 419347	n:460000
RASGRF2   460000 perm   191 sec   (2412 perm/sec)   p_kst 9.116239e-01   p_cons 1.258696e-03   p_joint 1.727174e-02

Joint ci ratio: 4.331206e-02	ci left: 1.675864e-02	ci right 1.750265e-02	k: 8050	n:470000
Cons ci ratio: 1.606024e-01	ci left: 1.164281e-03	ci right 1.369605e-03	k: 594	n:470000
KS ci ratio: 1.780357e-03	ci left: 9.108062e-01	ci right 9.124313e-01	k: 428462	n:470000
RASGRF2   470000 perm   197 sec   (2391 perm/sec)   p_kst 9.116213e-01   p_cons 1.263830e-03   p_joint 1.712766e-02

Joint ci ratio: 4.271943e-02	ci left: 1.687117e-02	ci right 1.760967e-02	k: 8274	n:480000
Cons ci ratio: 1.587455e-01	ci left: 1.168027e-03	ci right 1.371403e-03	k: 608	n:480000
KS ci ratio: 1.760716e-03	ci left: 9.109064e-01	ci right 9.125137e-01	k: 437622	n:480000
RASGRF2   480000 perm   202 sec   (2372 perm/sec)   p_kst 9.117125e-01   p_cons 1.266667e-03   p_joint 1.723750e-02

Joint ci ratio: 4.239221e-02	ci left: 1.678731e-02	ci right 1.751638e-02	k: 8403	n:490000
Cons ci ratio: 1.573312e-01	ci left: 1.165751e-03	ci right 1.366751e-03	k: 619	n:490000
KS ci ratio: 1.741290e-03	ci left: 9.110415e-01	ci right 9.126312e-01	k: 446801	n:490000
RASGRF2   490000 perm   208 sec   (2351 perm/sec)   p_kst 9.118388e-01   p_cons 1.263265e-03   p_joint 1.714898e-02

Joint ci ratio: 4.212513e-02	ci left: 1.666526e-02	ci right 1.738435e-02	k: 8511	n:500000
Cons ci ratio: 1.553391e-01	ci left: 1.173184e-03	ci right 1.372667e-03	k: 635	n:500000
KS ci ratio: 1.723561e-03	ci left: 9.110708e-01	ci right 9.126444e-01	k: 455930	n:500000
RASGRF2   500000 perm   215 sec   (2330 perm/sec)   p_kst 9.118600e-01   p_cons 1.270000e-03   p_joint 1.702200e-02

Joint ci ratio: 4.165459e-02	ci left: 1.671296e-02	ci right 1.742587e-02	k: 8704	n:510000
Cons ci ratio: 1.543719e-01	ci left: 1.165259e-03	ci right 1.362046e-03	k: 643	n:510000
KS ci ratio: 1.705322e-03	ci left: 9.111975e-01	ci right 9.127547e-01	k: 465109	n:510000
RASGRF2   510000 perm   221 sec   (2310 perm/sec)   p_kst 9.119784e-01   p_cons 1.260784e-03   p_joint 1.706667e-02

Joint ci ratio: 4.139872e-02	ci left: 1.659898e-02	ci right 1.730257e-02	k: 8813	n:520000
Cons ci ratio: 1.533050e-01	ci left: 1.159491e-03	ci right 1.353826e-03	k: 652	n:520000
KS ci ratio: 1.689285e-03	ci left: 9.111630e-01	ci right 9.127054e-01	k: 474207	n:520000
RASGRF2   520000 perm   227 sec   (2291 perm/sec)   p_kst 9.119365e-01   p_cons 1.253846e-03   p_joint 1.694808e-02

Joint ci ratio: 4.133398e-02	ci left: 1.634177e-02	ci right 1.703334e-02	k: 8843	n:530000
Cons ci ratio: 1.524906e-01	ci left: 1.150316e-03	ci right 1.341996e-03	k: 659	n:530000
KS ci ratio: 1.672631e-03	ci left: 9.112322e-01	ci right 9.127595e-01	k: 483359	n:530000
RASGRF2   530000 perm   233 sec   (2272 perm/sec)   p_kst 9.119981e-01   p_cons 1.243396e-03   p_joint 1.668491e-02

Joint ci ratio: 4.123160e-02	ci left: 1.612341e-02	ci right 1.680402e-02	k: 8889	n:540000
Cons ci ratio: 1.514619e-01	ci left: 1.145046e-03	ci right 1.334444e-03	k: 668	n:540000
KS ci ratio: 1.657224e-03	ci left: 9.112245e-01	ci right 9.127377e-01	k: 492471	n:540000
RASGRF2   540000 perm   240 sec   (2254 perm/sec)   p_kst 9.119833e-01   p_cons 1.237037e-03   p_joint 1.646111e-02

Joint ci ratio: 4.084273e-02	ci left: 1.613618e-02	ci right 1.681075e-02	k: 9059	n:550000
Cons ci ratio: 1.495728e-01	ci left: 1.153973e-03	ci right 1.342253e-03	k: 685	n:550000
KS ci ratio: 1.641844e-03	ci left: 9.112555e-01	ci right 9.127547e-01	k: 501604	n:550000
RASGRF2   550000 perm   246 sec   (2235 perm/sec)   p_kst 9.120073e-01   p_cons 1.245455e-03   p_joint 1.647091e-02

Joint ci ratio: 4.079167e-02	ci left: 1.589218e-02	ci right 1.655570e-02	k: 9084	n:560000
Cons ci ratio: 1.482816e-01	ci left: 1.153996e-03	ci right 1.340511e-03	k: 697	n:560000
KS ci ratio: 1.626377e-03	ci left: 9.113357e-01	ci right 9.128208e-01	k: 510765	n:560000
RASGRF2   560000 perm   253 sec   (2217 perm/sec)   p_kst 9.120804e-01   p_cons 1.244643e-03   p_joint 1.622143e-02

Joint ci ratio: 4.045057e-02	ci left: 1.588080e-02	ci right 1.653817e-02	k: 9238	n:570000
Cons ci ratio: 1.467132e-01	ci left: 1.159095e-03	ci right 1.344279e-03	k: 712	n:570000
KS ci ratio: 1.611391e-03	ci left: 9.114077e-01	ci right 9.128793e-01	k: 519923	n:570000
RASGRF2   570000 perm   259 sec   (2199 perm/sec)   p_kst 9.121456e-01   p_cons 1.249123e-03   p_joint 1.620702e-02

Joint ci ratio: 3.978129e-02	ci left: 1.613786e-02	ci right 1.679457e-02	k: 9549	n:580000
Cons ci ratio: 1.454940e-01	ci left: 1.159044e-03	ci right 1.342548e-03	k: 724	n:580000
KS ci ratio: 1.597241e-03	ci left: 9.114341e-01	ci right 9.128928e-01	k: 529056	n:580000
RASGRF2   580000 perm   266 sec   (2181 perm/sec)   p_kst 9.121655e-01   p_cons 1.248276e-03   p_joint 1.646379e-02

Joint ci ratio: 3.945853e-02	ci left: 1.612780e-02	ci right 1.677865e-02	k: 9706	n:590000
Cons ci ratio: 1.441091e-01	ci left: 1.162269e-03	ci right 1.344380e-03	k: 738	n:590000
KS ci ratio: 1.583658e-03	ci left: 9.114393e-01	ci right 9.128855e-01	k: 538177	n:590000
RASGRF2   590000 perm   273 sec   (2164 perm/sec)   p_kst 9.121644e-01   p_cons 1.250847e-03   p_joint 1.645085e-02

Joint ci ratio: 3.913543e-02	ci left: 1.612470e-02	ci right 1.676998e-02	k: 9867	n:600000
Cons ci ratio: 1.432399e-01	ci left: 1.157358e-03	ci right 1.337513e-03	k: 747	n:600000
KS ci ratio: 1.570775e-03	ci left: 9.114075e-01	ci right 9.128419e-01	k: 547276	n:600000
RASGRF2   600000 perm   279 sec   (2147 perm/sec)   p_kst 9.121267e-01   p_cons 1.245000e-03   p_joint 1.644500e-02

Joint ci ratio: 3.949002e-02	ci left: 1.558270e-02	ci right 1.621207e-02	k: 9696	n:610000
Cons ci ratio: 1.428594e-01	ci left: 1.144707e-03	ci right 1.322379e-03	k: 751	n:610000
KS ci ratio: 1.558185e-03	ci left: 9.113784e-01	ci right 9.128013e-01	k: 556376	n:610000
RASGRF2   610000 perm   286 sec   (2130 perm/sec)   p_kst 9.120918e-01   p_cons 1.231148e-03   p_joint 1.589508e-02

Joint ci ratio: 3.916817e-02	ci left: 1.558690e-02	ci right 1.621119e-02	k: 9856	n:620000
Cons ci ratio: 1.417331e-01	ci left: 1.144910e-03	ci right 1.321094e-03	k: 763	n:620000
KS ci ratio: 1.545116e-03	ci left: 9.114313e-01	ci right 9.128423e-01	k: 565526	n:620000
RASGRF2   620000 perm   293 sec   (2114 perm/sec)   p_kst 9.121387e-01   p_cons 1.230645e-03   p_joint 1.589677e-02

Joint ci ratio: 3.897284e-02	ci left: 1.549665e-02	ci right 1.611416e-02	k: 9956	n:630000
Cons ci ratio: 1.411805e-01	ci left: 1.135923e-03	ci right 1.309985e-03	k: 769	n:630000
KS ci ratio: 1.532901e-03	ci left: 9.114268e-01	ci right 9.128266e-01	k: 574641	n:630000
RASGRF2   630000 perm   300 sec   (2098 perm/sec)   p_kst 9.121286e-01   p_cons 1.220635e-03   p_joint 1.580317e-02

Joint ci ratio: 3.819614e-02	ci left: 1.588128e-02	ci right 1.650123e-02	k: 10361	n:640000
Cons ci ratio: 1.404533e-01	ci left: 1.130234e-03	ci right 1.302457e-03	k: 777	n:640000
KS ci ratio: 1.521016e-03	ci left: 9.114178e-01	ci right 9.128066e-01	k: 583753	n:640000
RASGRF2   640000 perm   307 sec   (2082 perm/sec)   p_kst 9.121141e-01   p_cons 1.214063e-03   p_joint 1.618906e-02

Joint ci ratio: 3.798180e-02	ci left: 1.581676e-02	ci right 1.643065e-02	k: 10479	n:650000
Cons ci ratio: 1.394709e-01	ci left: 1.129176e-03	ci right 1.299935e-03	k: 788	n:650000
KS ci ratio: 1.509344e-03	ci left: 9.114152e-01	ci right 9.127934e-01	k: 592869	n:650000
RASGRF2   650000 perm   315 sec   (2065 perm/sec)   p_kst 9.121062e-01   p_cons 1.212308e-03   p_joint 1.612154e-02

Joint ci ratio: 3.783820e-02	ci left: 1.569865e-02	ci right 1.630561e-02	k: 10560	n:660000
Cons ci ratio: 1.383358e-01	ci left: 1.131080e-03	ci right 1.300620e-03	k: 801	n:660000
KS ci ratio: 1.498362e-03	ci left: 9.113672e-01	ci right 9.127353e-01	k: 601955	n:660000
RASGRF2   660000 perm   322 sec   (2049 perm/sec)   p_kst 9.120530e-01   p_cons 1.213636e-03   p_joint 1.600000e-02

Joint ci ratio: 3.955792e-02	ci left: 1.415895e-02	ci right 1.473182e-02	k: 9677	n:670000
Cons ci ratio: 1.378218e-01	ci left: 1.122843e-03	ci right 1.290472e-03	k: 807	n:670000
KS ci ratio: 1.487035e-03	ci left: 9.113835e-01	ci right 9.127413e-01	k: 611083	n:670000
RASGRF2   670000 perm   329 sec   (2034 perm/sec)   p_kst 9.120642e-01   p_cons 1.204478e-03   p_joint 1.444328e-02

Joint ci ratio: 3.927906e-02	ci left: 1.415167e-02	ci right 1.472012e-02	k: 9815	n:680000
Cons ci ratio: 1.372292e-01	ci left: 1.116271e-03	ci right 1.282143e-03	k: 814	n:680000
KS ci ratio: 1.476556e-03	ci left: 9.113345e-01	ci right 9.126826e-01	k: 620167	n:680000
RASGRF2   680000 perm   337 sec   (2018 perm/sec)   p_kst 9.120103e-01   p_cons 1.197059e-03   p_joint 1.443382e-02

Joint ci ratio: 3.779528e-02	ci left: 1.506051e-02	ci right 1.564212e-02	k: 10591	n:690000
Cons ci ratio: 1.363952e-01	ci left: 1.114090e-03	ci right 1.278550e-03	k: 824	n:690000
KS ci ratio: 1.465408e-03	ci left: 9.113844e-01	ci right 9.127223e-01	k: 629318	n:690000
RASGRF2   690000 perm   344 sec   (2003 perm/sec)   p_kst 9.120551e-01   p_cons 1.194203e-03   p_joint 1.534928e-02

Joint ci ratio: 3.680145e-02	ci left: 1.565639e-02	ci right 1.624477e-02	k: 11164	n:700000
Cons ci ratio: 1.354139e-01	ci left: 1.114734e-03	ci right 1.278010e-03	k: 836	n:700000
KS ci ratio: 1.455209e-03	ci left: 9.113554e-01	ci right 9.126840e-01	k: 638415	n:700000
RASGRF2   700000 perm   352 sec   (1989 perm/sec)   p_kst 9.120214e-01   p_cons 1.194286e-03   p_joint 1.594857e-02

Joint ci ratio: 3.642145e-02	ci left: 1.576106e-02	ci right 1.634713e-02	k: 11397	n:710000
Cons ci ratio: 1.341375e-01	ci left: 1.120809e-03	ci right 1.283305e-03	k: 852	n:710000
KS ci ratio: 1.445269e-03	ci left: 9.113217e-01	ci right 9.126411e-01	k: 647508	n:710000
RASGRF2   710000 perm   360 sec   (1975 perm/sec)   p_kst 9.119831e-01   p_cons 1.200000e-03   p_joint 1.605211e-02

Joint ci ratio: 3.657092e-02	ci left: 1.541962e-02	ci right 1.599540e-02	k: 11308	n:720000
Cons ci ratio: 1.324395e-01	ci left: 1.134780e-03	ci right 1.297054e-03	k: 874	n:720000
KS ci ratio: 1.435456e-03	ci left: 9.112973e-01	ci right 9.126077e-01	k: 656607	n:720000
RASGRF2   720000 perm   368 sec   (1958 perm/sec)   p_kst 9.119542e-01   p_cons 1.213889e-03   p_joint 1.570556e-02

Joint ci ratio: 3.608539e-02	ci left: 1.562108e-02	ci right 1.619647e-02	k: 11612	n:730000
Cons ci ratio: 1.313185e-01	ci left: 1.139105e-03	ci right 1.300511e-03	k: 889	n:730000
KS ci ratio: 1.425548e-03	ci left: 9.113066e-01	ci right 9.126080e-01	k: 665730	n:730000
RASGRF2   730000 perm   376 sec   (1943 perm/sec)   p_kst 9.119589e-01   p_cons 1.217808e-03   p_joint 1.590685e-02

Joint ci ratio: 3.558826e-02	ci left: 1.584393e-02	ci right 1.641933e-02	k: 11936	n:740000
Cons ci ratio: 1.301534e-01	ci left: 1.144626e-03	ci right 1.305265e-03	k: 905	n:740000
KS ci ratio: 1.415831e-03	ci left: 9.113170e-01	ci right 9.126095e-01	k: 674854	n:740000
RASGRF2   740000 perm   384 sec   (1929 perm/sec)   p_kst 9.119649e-01   p_cons 1.222973e-03   p_joint 1.612973e-02

Joint ci ratio: 3.544759e-02	ci left: 1.575953e-02	ci right 1.632955e-02	k: 12032	n:750000
Cons ci ratio: 1.292295e-01	ci left: 1.146136e-03	ci right 1.305757e-03	k: 918	n:750000
KS ci ratio: 1.406064e-03	ci left: 9.113553e-01	ci right 9.126389e-01	k: 683999	n:750000
RASGRF2   750000 perm   392 sec   (1915 perm/sec)   p_kst 9.119987e-01   p_cons 1.224000e-03   p_joint 1.604267e-02

Joint ci ratio: 3.525394e-02	ci left: 1.572561e-02	ci right 1.629124e-02	k: 12165	n:760000
Cons ci ratio: 1.281874e-01	ci left: 1.150156e-03	ci right 1.308948e-03	k: 933	n:760000
KS ci ratio: 1.396107e-03	ci left: 9.114374e-01	ci right 9.127121e-01	k: 693178	n:760000
RASGRF2   760000 perm   400 sec   (1901 perm/sec)   p_kst 9.120763e-01   p_cons 1.227632e-03   p_joint 1.600658e-02

Joint ci ratio: 3.500707e-02	ci left: 1.574280e-02	ci right 1.630500e-02	k: 12337	n:770000
Cons ci ratio: 1.277102e-01	ci left: 1.144019e-03	ci right 1.301330e-03	k: 940	n:770000
KS ci ratio: 1.386885e-03	ci left: 9.114562e-01	ci right 9.127225e-01	k: 702310	n:770000
RASGRF2   770000 perm   408 sec   (1887 perm/sec)   p_kst 9.120909e-01   p_cons 1.220779e-03   p_joint 1.602208e-02

Joint ci ratio: 3.480776e-02	ci left: 1.572143e-02	ci right 1.627961e-02	k: 12479	n:780000
Cons ci ratio: 1.267041e-01	ci left: 1.147971e-03	ci right 1.304489e-03	k: 955	n:780000
KS ci ratio: 1.377216e-03	ci left: 9.115479e-01	ci right 9.128054e-01	k: 711499	n:780000
RASGRF2   780000 perm   416 sec   (1873 perm/sec)   p_kst 9.121782e-01   p_cons 1.224359e-03   p_joint 1.599872e-02

Joint ci ratio: 3.458258e-02	ci left: 1.572696e-02	ci right 1.628166e-02	k: 12642	n:790000
Cons ci ratio: 1.258512e-01	ci left: 1.149376e-03	ci right 1.304952e-03	k: 968	n:790000
KS ci ratio: 1.367961e-03	ci left: 9.116119e-01	ci right 9.128610e-01	k: 720668	n:790000
RASGRF2   790000 perm   425 sec   (1860 perm/sec)   p_kst 9.122380e-01   p_cons 1.225316e-03   p_joint 1.600253e-02

Joint ci ratio: 3.441776e-02	ci left: 1.568155e-02	ci right 1.623196e-02	k: 12764	n:800000
Cons ci ratio: 1.251430e-01	ci left: 1.148327e-03	ci right 1.302821e-03	k: 979	n:800000
KS ci ratio: 1.359579e-03	ci left: 9.115928e-01	ci right 9.128342e-01	k: 729772	n:800000
RASGRF2   800000 perm   433 sec   (1847 perm/sec)   p_kst 9.122150e-01   p_cons 1.223750e-03   p_joint 1.595500e-02

Joint ci ratio: 3.412633e-02	ci left: 1.575479e-02	ci right 1.630300e-02	k: 12982	n:810000
Cons ci ratio: 1.241959e-01	ci left: 1.152091e-03	ci right 1.305833e-03	k: 994	n:810000
KS ci ratio: 1.350683e-03	ci left: 9.116534e-01	ci right 9.128868e-01	k: 738940	n:810000
RASGRF2   810000 perm   442 sec   (1834 perm/sec)   p_kst 9.122716e-01   p_cons 1.227160e-03   p_joint 1.602716e-02

Joint ci ratio: 3.384998e-02	ci left: 1.581901e-02	ci right 1.636490e-02	k: 13194	n:820000
Cons ci ratio: 1.232700e-01	ci left: 1.155768e-03	ci right 1.308766e-03	k: 1009	n:820000
KS ci ratio: 1.342399e-03	ci left: 9.116600e-01	ci right 9.128858e-01	k: 748065	n:820000
RASGRF2   820000 perm   450 sec   (1822 perm/sec)   p_kst 9.122744e-01   p_cons 1.230488e-03   p_joint 1.609024e-02

Joint ci ratio: 3.387942e-02	ci left: 1.560450e-02	ci right 1.614347e-02	k: 13174	n:830000
Cons ci ratio: 1.226043e-01	ci left: 1.154688e-03	ci right 1.306658e-03	k: 1020	n:830000
KS ci ratio: 1.334265e-03	ci left: 9.116665e-01	ci right 9.128849e-01	k: 757190	n:830000
RASGRF2   830000 perm   459 sec   (1809 perm/sec)   p_kst 9.122771e-01   p_cons 1.228916e-03   p_joint 1.587229e-02

Joint ci ratio: 3.367938e-02	ci left: 1.560406e-02	ci right 1.613976e-02	k: 13331	n:840000
Cons ci ratio: 1.218901e-01	ci left: 1.154791e-03	ci right 1.305825e-03	k: 1032	n:840000
KS ci ratio: 1.326514e-03	ci left: 9.116441e-01	ci right 9.128554e-01	k: 766291	n:840000
RASGRF2   840000 perm   467 sec   (1797 perm/sec)   p_kst 9.122512e-01   p_cons 1.228571e-03   p_joint 1.587024e-02

Joint ci ratio: 3.349420e-02	ci left: 1.559313e-02	ci right 1.612547e-02	k: 13479	n:850000
Cons ci ratio: 1.212464e-01	ci left: 1.153753e-03	ci right 1.303797e-03	k: 1043	n:850000
KS ci ratio: 1.319032e-03	ci left: 9.116058e-01	ci right 9.128102e-01	k: 775378	n:850000
RASGRF2   850000 perm   476 sec   (1786 perm/sec)   p_kst 9.122094e-01   p_cons 1.227059e-03   p_joint 1.585765e-02

Joint ci ratio: 3.328351e-02	ci left: 1.560900e-02	ci right 1.613846e-02	k: 13650	n:860000
Cons ci ratio: 1.202708e-01	ci left: 1.159507e-03	ci right 1.309001e-03	k: 1060	n:860000
KS ci ratio: 1.311227e-03	ci left: 9.116232e-01	ci right 9.128205e-01	k: 784512	n:860000
RASGRF2   860000 perm   485 sec   (1774 perm/sec)   p_kst 9.122233e-01   p_cons 1.232558e-03   p_joint 1.587209e-02

Joint ci ratio: 3.309013e-02	ci left: 1.561197e-02	ci right 1.613839e-02	k: 13810	n:870000
Cons ci ratio: 1.192630e-01	ci left: 1.166250e-03	ci right 1.315264e-03	k: 1078	n:870000
KS ci ratio: 1.303531e-03	ci left: 9.116437e-01	ci right 9.128340e-01	k: 793649	n:870000
RASGRF2   870000 perm   494 sec   (1762 perm/sec)   p_kst 9.122402e-01   p_cons 1.239080e-03   p_joint 1.587356e-02

Joint ci ratio: 3.354385e-02	ci left: 1.502542e-02	ci right 1.553914e-02	k: 13447	n:880000
Cons ci ratio: 1.186053e-01	ci left: 1.166228e-03	ci right 1.314359e-03	k: 1090	n:880000
KS ci ratio: 1.295960e-03	ci left: 9.116649e-01	ci right 9.128483e-01	k: 802787	n:880000
RASGRF2   880000 perm   503 sec   (1751 perm/sec)   p_kst 9.122580e-01   p_cons 1.238636e-03   p_joint 1.528068e-02

Joint ci ratio: 3.277105e-02	ci left: 1.556312e-02	ci right 1.608274e-02	k: 14081	n:890000
Cons ci ratio: 1.179049e-01	ci left: 1.167299e-03	ci right 1.314630e-03	k: 1103	n:890000
KS ci ratio: 1.288555e-03	ci left: 9.116811e-01	ci right 9.128577e-01	k: 811921	n:890000
RASGRF2   890000 perm   512 sec   (1739 perm/sec)   p_kst 9.122708e-01   p_cons 1.239326e-03   p_joint 1.582135e-02

Joint ci ratio: 3.314659e-02	ci left: 1.504852e-02	ci right 1.555683e-02	k: 13771	n:900000
Cons ci ratio: 1.174274e-01	ci left: 1.164034e-03	ci right 1.310317e-03	k: 1112	n:900000
KS ci ratio: 1.281703e-03	ci left: 9.116435e-01	ci right 9.128138e-01	k: 821007	n:900000
RASGRF2   900000 perm   521 sec   (1728 perm/sec)   p_kst 9.122300e-01   p_cons 1.235556e-03   p_joint 1.530111e-02

Joint ci ratio: 3.299046e-02	ci left: 1.502592e-02	ci right 1.553102e-02	k: 13902	n:910000
Cons ci ratio: 1.169557e-01	ci left: 1.160843e-03	ci right 1.306098e-03	k: 1121	n:910000
KS ci ratio: 1.274618e-03	ci left: 9.116497e-01	ci right 9.128136e-01	k: 830132	n:910000
RASGRF2   910000 perm   530 sec   (1717 perm/sec)   p_kst 9.122330e-01   p_cons 1.231868e-03   p_joint 1.527692e-02

Joint ci ratio: 3.280568e-02	ci left: 1.503184e-02	ci right 1.553426e-02	k: 14059	n:920000
Cons ci ratio: 1.163867e-01	ci left: 1.159833e-03	ci right 1.304207e-03	k: 1132	n:920000
KS ci ratio: 1.267743e-03	ci left: 9.116439e-01	ci right 9.128014e-01	k: 839246	n:920000
RASGRF2   920000 perm   539 sec   (1706 perm/sec)   p_kst 9.122239e-01   p_cons 1.230435e-03   p_joint 1.528152e-02

Joint ci ratio: 3.272462e-02	ci left: 1.494592e-02	ci right 1.544421e-02	k: 14130	n:930000
Cons ci ratio: 1.156741e-01	ci left: 1.161978e-03	ci right 1.305673e-03	k: 1146	n:930000
KS ci ratio: 1.260826e-03	ci left: 9.116575e-01	ci right 9.128087e-01	k: 848378	n:930000
RASGRF2   930000 perm   549 sec   (1695 perm/sec)   p_kst 9.122344e-01   p_cons 1.232258e-03   p_joint 1.519355e-02

Joint ci ratio: 3.144383e-02	ci left: 1.600909e-02	ci right 1.652156e-02	k: 15288	n:940000
Cons ci ratio: 1.148754e-01	ci left: 1.166147e-03	ci right 1.309295e-03	k: 1162	n:940000
KS ci ratio: 1.254354e-03	ci left: 9.116282e-01	ci right 9.127735e-01	k: 857470	n:940000
RASGRF2   940000 perm   558 sec   (1684 perm/sec)   p_kst 9.122021e-01   p_cons 1.236170e-03   p_joint 1.626383e-02

Joint ci ratio: 3.185235e-02	ci left: 1.544262e-02	ci right 1.594350e-02	k: 14907	n:950000
Cons ci ratio: 1.141901e-01	ci left: 1.168187e-03	ci right 1.310672e-03	k: 1176	n:950000
KS ci ratio: 1.247194e-03	ci left: 9.117009e-01	ci right 9.128397e-01	k: 866658	n:950000
RASGRF2   950000 perm   568 sec   (1673 perm/sec)   p_kst 9.122716e-01   p_cons 1.237895e-03   p_joint 1.569158e-02

Joint ci ratio: 3.167633e-02	ci left: 1.545330e-02	ci right 1.595171e-02	k: 15073	n:960000
Cons ci ratio: 1.133265e-01	ci left: 1.174235e-03	ci right 1.316302e-03	k: 1194	n:960000
KS ci ratio: 1.240816e-03	ci left: 9.116864e-01	ci right 9.128194e-01	k: 875764	n:960000
RASGRF2   960000 perm   577 sec   (1663 perm/sec)   p_kst 9.122542e-01   p_cons 1.243750e-03   p_joint 1.570104e-02

Joint ci ratio: 3.082979e-02	ci left: 1.614102e-02	ci right 1.664744e-02	k: 15901	n:970000
Cons ci ratio: 1.128086e-01	ci left: 1.173149e-03	ci right 1.314393e-03	k: 1205	n:970000
KS ci ratio: 1.234360e-03	ci left: 9.116950e-01	ci right 9.128221e-01	k: 884892	n:970000
RASGRF2   970000 perm   587 sec   (1652 perm/sec)   p_kst 9.122598e-01   p_cons 1.242268e-03   p_joint 1.639278e-02

Joint ci ratio: 3.068757e-02	ci left: 1.612617e-02	ci right 1.662976e-02	k: 16049	n:980000
Cons ci ratio: 1.123902e-01	ci left: 1.170103e-03	ci right 1.310423e-03	k: 1214	n:980000
KS ci ratio: 1.228098e-03	ci left: 9.116912e-01	ci right 9.128125e-01	k: 894008	n:980000
RASGRF2   980000 perm   597 sec   (1642 perm/sec)   p_kst 9.122531e-01   p_cons 1.238776e-03   p_joint 1.637653e-02

Joint ci ratio: 2.993050e-02	ci left: 1.677635e-02	ci right 1.728709e-02	k: 16860	n:990000
Cons ci ratio: 1.116572e-01	ci left: 1.173993e-03	ci right 1.313800e-03	k: 1230	n:990000
KS ci ratio: 1.222007e-03	ci left: 9.116773e-01	ci right 9.127930e-01	k: 903114	n:990000
RASGRF2   990000 perm   607 sec   (1632 perm/sec)   p_kst 9.122364e-01   p_cons 1.242424e-03   p_joint 1.703030e-02

Joint ci ratio: 2.945259e-02	ci left: 1.714958e-02	ci right 1.766322e-02	k: 17405	n:1000000
Cons ci ratio: 1.108938e-01	ci left: 1.178780e-03	ci right 1.318135e-03	k: 1247	n:1000000
KS ci ratio: 1.216256e-03	ci left: 9.116306e-01	ci right 9.127410e-01	k: 912187	n:1000000
RASGRF2   1000000 perm   617 sec   (1621 perm/sec)   p_kst 9.121870e-01   p_cons 1.247000e-03   p_joint 1.740500e-02

Joint ci ratio: 2.951388e-02	ci left: 1.691293e-02	ci right 1.742054e-02	k: 17337	n:1010000
Cons ci ratio: 1.104084e-01	ci left: 1.177698e-03	ci right 1.316277e-03	k: 1258	n:1010000
KS ci ratio: 1.210444e-03	ci left: 9.116037e-01	ci right 9.127088e-01	k: 921279	n:1010000
RASGRF2   1010000 perm   627 sec   (1611 perm/sec)   p_kst 9.121574e-01   p_cons 1.245545e-03   p_joint 1.716535e-02

Joint ci ratio: 2.954069e-02	ci left: 1.671984e-02	ci right 1.722212e-02	k: 17309	n:1020000
Cons ci ratio: 1.099293e-01	ci left: 1.176639e-03	ci right 1.314453e-03	k: 1269	n:1020000
KS ci ratio: 1.204662e-03	ci left: 9.115842e-01	ci right 9.126840e-01	k: 930378	n:1020000
RASGRF2   1020000 perm   637 sec   (1601 perm/sec)   p_kst 9.121353e-01   p_cons 1.244118e-03   p_joint 1.696961e-02

Joint ci ratio: 2.940439e-02	ci left: 1.671267e-02	ci right 1.721238e-02	k: 17470	n:1030000
Cons ci ratio: 1.094992e-01	ci left: 1.174658e-03	ci right 1.311667e-03	k: 1279	n:1030000
KS ci ratio: 1.198730e-03	ci left: 9.115963e-01	ci right 9.126907e-01	k: 939509	n:1030000
RASGRF2   1030000 perm   647 sec   (1592 perm/sec)   p_kst 9.121447e-01   p_cons 1.241748e-03   p_joint 1.696117e-02

Joint ci ratio: 2.933603e-02	ci left: 1.663118e-02	ci right 1.712728e-02	k: 17553	n:1040000
Cons ci ratio: 1.088630e-01	ci left: 1.177392e-03	ci right 1.313871e-03	k: 1294	n:1040000
KS ci ratio: 1.192827e-03	ci left: 9.116159e-01	ci right 9.127049e-01	k: 948648	n:1040000
RASGRF2   1040000 perm   657 sec   (1583 perm/sec)   p_kst 9.121615e-01   p_cons 1.244231e-03   p_joint 1.687788e-02

Joint ci ratio: 2.990119e-02	ci left: 1.586390e-02	ci right 1.634639e-02	k: 16909	n:1050000
Cons ci ratio: 1.084037e-01	ci left: 1.176371e-03	ci right 1.312119e-03	k: 1305	n:1050000
KS ci ratio: 1.186552e-03	ci left: 9.116972e-01	ci right 9.127805e-01	k: 957852	n:1050000
RASGRF2   1050000 perm   667 sec   (1574 perm/sec)   p_kst 9.122400e-01   p_cons 1.242857e-03   p_joint 1.610381e-02

Joint ci ratio: 2.975100e-02	ci left: 1.587436e-02	ci right 1.635470e-02	k: 17080	n:1060000
Cons ci ratio: 1.077455e-01	ci left: 1.179959e-03	ci right 1.315243e-03	k: 1321	n:1060000
KS ci ratio: 1.180784e-03	ci left: 9.117211e-01	ci right 9.127992e-01	k: 966997	n:1060000
RASGRF2   1060000 perm   678 sec   (1564 perm/sec)   p_kst 9.122613e-01   p_cons 1.246226e-03   p_joint 1.611321e-02

Joint ci ratio: 2.890832e-02	ci left: 1.665012e-02	ci right 1.713942e-02	k: 18076	n:1070000
Cons ci ratio: 1.073808e-01	ci left: 1.177116e-03	ci right 1.311588e-03	k: 1330	n:1070000
KS ci ratio: 1.175285e-03	ci left: 9.117194e-01	ci right 9.127924e-01	k: 976115	n:1070000
RASGRF2   1070000 perm   688 sec   (1555 perm/sec)   p_kst 9.122570e-01   p_cons 1.242991e-03   p_joint 1.689346e-02

Joint ci ratio: 2.937088e-02	ci left: 1.598756e-02	ci right 1.646504e-02	k: 17523	n:1080000
Cons ci ratio: 1.071399e-01	ci left: 1.171623e-03	ci right 1.305149e-03	k: 1336	n:1080000
KS ci ratio: 1.169856e-03	ci left: 9.117185e-01	ci right 9.127867e-01	k: 985234	n:1080000
RASGRF2   1080000 perm   699 sec   (1546 perm/sec)   p_kst 9.122537e-01   p_cons 1.237037e-03   p_joint 1.622500e-02

Joint ci ratio: 2.935098e-02	ci left: 1.586455e-02	ci right 1.633803e-02	k: 17549	n:1090000
Cons ci ratio: 1.065832e-01	ci left: 1.173375e-03	ci right 1.306362e-03	k: 1350	n:1090000
KS ci ratio: 1.164267e-03	ci left: 9.117500e-01	ci right 9.128130e-01	k: 994388	n:1090000
RASGRF2   1090000 perm   710 sec   (1536 perm/sec)   p_kst 9.122826e-01   p_cons 1.238532e-03   p_joint 1.610000e-02

Joint ci ratio: 2.941625e-02	ci left: 1.565352e-02	ci right 1.612176e-02	k: 17475	n:1100000
Cons ci ratio: 1.061520e-01	ci left: 1.172442e-03	ci right 1.304752e-03	k: 1361	n:1100000
KS ci ratio: 1.159073e-03	ci left: 9.117371e-01	ci right 9.127953e-01	k: 1003494	n:1100000
RASGRF2   1100000 perm   720 sec   (1527 perm/sec)   p_kst 9.122673e-01   p_cons 1.237273e-03   p_joint 1.588636e-02

Joint ci ratio: 2.927237e-02	ci left: 1.566632e-02	ci right 1.613261e-02	k: 17647	n:1110000
Cons ci ratio: 1.058032e-01	ci left: 1.169773e-03	ci right 1.301320e-03	k: 1370	n:1110000
KS ci ratio: 1.154098e-03	ci left: 9.117036e-01	ci right 9.127573e-01	k: 1012577	n:1110000
RASGRF2   1110000 perm   731 sec   (1518 perm/sec)   p_kst 9.122315e-01   p_cons 1.234234e-03   p_joint 1.589820e-02

Joint ci ratio: 2.910239e-02	ci left: 1.570903e-02	ci right 1.617383e-02	k: 17853	n:1120000
Cons ci ratio: 1.051530e-01	ci left: 1.174107e-03	ci right 1.305280e-03	k: 1387	n:1120000
KS ci ratio: 1.148834e-03	ci left: 9.117200e-01	ci right 9.127689e-01	k: 1021715	n:1120000
RASGRF2   1120000 perm   742 sec   (1509 perm/sec)   p_kst 9.122455e-01   p_cons 1.238393e-03   p_joint 1.594018e-02

Joint ci ratio: 2.897449e-02	ci left: 1.570882e-02	ci right 1.617154e-02	k: 18011	n:1130000
Cons ci ratio: 1.048891e-01	ci left: 1.169748e-03	ci right 1.300086e-03	k: 1394	n:1130000
KS ci ratio: 1.143932e-03	ci left: 9.116953e-01	ci right 9.127397e-01	k: 1030807	n:1130000
RASGRF2   1130000 perm   753 sec   (1501 perm/sec)   p_kst 9.122186e-01   p_cons 1.233628e-03   p_joint 1.593894e-02

Joint ci ratio: 2.884745e-02	ci left: 1.570949e-02	ci right 1.617017e-02	k: 18170	n:1140000
Cons ci ratio: 1.045153e-01	ci left: 1.168029e-03	ci right 1.297684e-03	k: 1404	n:1140000
KS ci ratio: 1.138811e-03	ci left: 9.117107e-01	ci right 9.127504e-01	k: 1039944	n:1140000
RASGRF2   1140000 perm   764 sec   (1493 perm/sec)   p_kst 9.122316e-01   p_cons 1.231579e-03   p_joint 1.593860e-02

Joint ci ratio: 2.872445e-02	ci left: 1.570756e-02	ci right 1.616618e-02	k: 18326	n:1150000
Cons ci ratio: 1.039984e-01	ci left: 1.169729e-03	ci right 1.298891e-03	k: 1418	n:1150000
KS ci ratio: 1.134078e-03	ci left: 9.116804e-01	ci right 9.127158e-01	k: 1049029	n:1150000
RASGRF2   1150000 perm   775 sec   (1484 perm/sec)   p_kst 9.121991e-01   p_cons 1.233043e-03   p_joint 1.593565e-02

Joint ci ratio: 2.869942e-02	ci left: 1.560124e-02	ci right 1.605635e-02	k: 18360	n:1160000
Cons ci ratio: 1.037795e-01	ci left: 1.164683e-03	ci right 1.293000e-03	k: 1424	n:1160000
KS ci ratio: 1.129052e-03	ci left: 9.117008e-01	ci right 9.127316e-01	k: 1058172	n:1160000
RASGRF2   1160000 perm   786 sec   (1476 perm/sec)   p_kst 9.122172e-01   p_cons 1.227586e-03   p_joint 1.582759e-02

Joint ci ratio: 2.878673e-02	ci left: 1.537708e-02	ci right 1.582704e-02	k: 18253	n:1170000
Cons ci ratio: 1.033453e-01	ci left: 1.164719e-03	ci right 1.292471e-03	k: 1436	n:1170000
KS ci ratio: 1.124248e-03	ci left: 9.116986e-01	ci right 9.127250e-01	k: 1067289	n:1170000
RASGRF2   1170000 perm   797 sec   (1467 perm/sec)   p_kst 9.122128e-01   p_cons 1.227350e-03   p_joint 1.560085e-02

Joint ci ratio: 2.866529e-02	ci left: 1.537717e-02	ci right 1.582521e-02	k: 18408	n:1180000
Cons ci ratio: 1.030947e-01	ci left: 1.160628e-03	ci right 1.287603e-03	k: 1443	n:1180000
KS ci ratio: 1.119486e-03	ci left: 9.116990e-01	ci right 9.127210e-01	k: 1076409	n:1180000
RASGRF2   1180000 perm   809 sec   (1459 perm/sec)   p_kst 9.122110e-01   p_cons 1.222881e-03   p_joint 1.560000e-02

Joint ci ratio: 2.825457e-02	ci left: 1.569270e-02	ci right 1.614327e-02	k: 18941	n:1190000
Cons ci ratio: 1.027397e-01	ci left: 1.159062e-03	ci right 1.285403e-03	k: 1453	n:1190000
KS ci ratio: 1.114709e-03	ci left: 9.117103e-01	ci right 9.127280e-01	k: 1085542	n:1190000
RASGRF2   1190000 perm   820 sec   (1451 perm/sec)   p_kst 9.122202e-01   p_cons 1.221008e-03   p_joint 1.591681e-02

Joint ci ratio: 2.841309e-02	ci left: 1.539227e-02	ci right 1.583674e-02	k: 18736	n:1200000
Cons ci ratio: 1.023883e-01	ci left: 1.157522e-03	ci right 1.283238e-03	k: 1463	n:1200000
KS ci ratio: 1.110212e-03	ci left: 9.116897e-01	ci right 9.127033e-01	k: 1094637	n:1200000
RASGRF2   1200000 perm   832 sec   (1443 perm/sec)   p_kst 9.121975e-01   p_cons 1.219167e-03   p_joint 1.561333e-02

Joint ci ratio: 2.830088e-02	ci left: 1.538733e-02	ci right 1.582987e-02	k: 18885	n:1210000
Cons ci ratio: 1.017987e-01	ci left: 1.161647e-03	ci right 1.287041e-03	k: 1480	n:1210000
KS ci ratio: 1.105723e-03	ci left: 9.116761e-01	ci right 9.126855e-01	k: 1103740	n:1210000
RASGRF2   1210000 perm   843 sec   (1435 perm/sec)   p_kst 9.121818e-01   p_cons 1.223140e-03   p_joint 1.560744e-02

Joint ci ratio: 2.818697e-02	ci left: 1.538573e-02	ci right 1.582641e-02	k: 19038	n:1220000
Cons ci ratio: 1.011517e-01	ci left: 1.167304e-03	ci right 1.292460e-03	k: 1499	n:1220000
KS ci ratio: 1.101186e-03	ci left: 9.116775e-01	ci right 9.126828e-01	k: 1112861	n:1220000
RASGRF2   1220000 perm   855 sec   (1427 perm/sec)   p_kst 9.121811e-01   p_cons 1.228689e-03   p_joint 1.560492e-02

Joint ci ratio: 2.807814e-02	ci left: 1.538012e-02	ci right 1.581891e-02	k: 19186	n:1230000
Cons ci ratio: 1.007495e-01	ci left: 1.167324e-03	ci right 1.291955e-03	k: 1511	n:1230000
KS ci ratio: 1.096889e-03	ci left: 9.116520e-01	ci right 9.126533e-01	k: 1121949	n:1230000
RASGRF2   1230000 perm   866 sec   (1420 perm/sec)   p_kst 9.121537e-01   p_cons 1.228455e-03   p_joint 1.559837e-02

Joint ci ratio: 2.794342e-02	ci left: 1.540424e-02	ci right 1.584158e-02	k: 19371	n:1240000
Cons ci ratio: 1.001877e-01	ci left: 1.171275e-03	ci right 1.295590e-03	k: 1528	n:1240000
KS ci ratio: 1.092482e-03	ci left: 9.116504e-01	ci right 9.126477e-01	k: 1131066	n:1240000
RASGRF2   1240000 perm   878 sec   (1412 perm/sec)   p_kst 9.121500e-01   p_cons 1.232258e-03   p_joint 1.562177e-02

Joint ci ratio: 2.778825e-02	ci left: 1.545261e-02	ci right 1.588884e-02	k: 19587	n:1250000
Cons ci ratio: 9.976442e-02	ci left: 1.172045e-03	ci right 1.295885e-03	k: 1541	n:1250000
KS ci ratio: 1.088062e-03	ci left: 9.116584e-01	ci right 9.126517e-01	k: 1140195	n:1250000
RASGRF2   1250000 perm   890 sec   (1405 perm/sec)   p_kst 9.121560e-01   p_cons 1.232800e-03   p_joint 1.566960e-02

Outputting figure to mutsig2_images.part000000000144/RASGRF2.6_3822_1250000_0.91216_0.0012328_0.01567.png
                gene_name: RASGRF2
               theta_stop: 0.100 
                    nperm: 1250000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.0012 
      ci_cons_bounds_left: 0.0012 
     ci_cons_bounds_right: 0.0013 
                  p_joint: 0.016 
     ci_joint_bounds_left: 0.015 
    ci_joint_bounds_right: 0.016 

Current progress: 12 percent done.
RASSF9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.229061e-02	ci left: 5.860046e-01	ci right 6.053396e-01	k: 5957	n:10000
Cons ci ratio: 9.159391e-02	ci left: 1.476637e-01	ci right 1.619380e-01	k: 1547	n:10000
KS ci ratio: 1.329427e-02	ci left: 8.907739e-01	ci right 9.027938e-01	k: 8969	n:10000
RASSF9   10000 perm   2 sec   (5951 perm/sec)   p_kst 8.969000e-01   p_cons 1.547000e-01   p_joint 5.957000e-01

Outputting figure to mutsig2_images.part000000000144/RASSF9.6_1316_10000_0.8969_0.1547_0.5957.png
                gene_name: RASSF9
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 15 percent done.
RB1CC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.659038e-02	ci left: 4.047210e-01	ci right 4.241289e-01	k: 4144	n:10000
Cons ci ratio: 5.403691e-02	ci left: 3.353812e-01	ci right 3.541093e-01	k: 3447	n:10000
KS ci ratio: 4.307694e-02	ci left: 4.431087e-01	ci right 4.627188e-01	k: 4529	n:10000
RB1CC1   10000 perm   2 sec   (4401 perm/sec)   p_kst 4.529000e-01   p_cons 3.447000e-01   p_joint 4.144000e-01

Outputting figure to mutsig2_images.part000000000144/RB1CC1.6_4873_10000_0.4529_0.3447_0.4144.png
                gene_name: RB1CC1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 18 percent done.
RBMX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.740754e-02	ci left: 1.961390e-01	ci right 2.120337e-01	k: 2040	n:10000
Cons ci ratio: 8.426517e-02	ci left: 1.703508e-01	ci right 1.854373e-01	k: 1778	n:10000
KS ci ratio: 5.332702e-02	ci left: 3.413419e-01	ci right 3.601452e-01	k: 3507	n:10000
RBMX   10000 perm   2 sec   (5837 perm/sec)   p_kst 3.507000e-01   p_cons 1.778000e-01   p_joint 2.040000e-01

Outputting figure to mutsig2_images.part000000000144/RBMX.6_1263_10000_0.3507_0.1778_0.204.png
                gene_name: RBMX
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 20 percent done.
RASGRP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.176417e-01	ci left: 1.261754e-02	ci right 1.747097e-02	k: 149	n:10000
Cons ci ratio: 1.208232e-02	ci left: 9.076136e-01	ci right 9.187443e-01	k: 9133	n:10000
KS ci ratio: 7.829804e-01	ci left: 1.538312e-03	ci right 3.568919e-03	k: 24	n:10000
RASGRP4   10000 perm   2 sec   (5961 perm/sec)   p_kst 2.400000e-03   p_cons 9.133000e-01   p_joint 1.490000e-02

Joint ci ratio: 3.467290e-01	ci left: 5.250702e-03	ci right 7.496443e-03	k: 126	n:20000
Cons ci ratio: 8.425477e-03	ci left: 9.115086e-01	ci right 9.192701e-01	k: 18309	n:20000
KS ci ratio: 5.772931e-01	ci left: 1.641624e-03	ci right 3.009532e-03	k: 45	n:20000
RASGRP4   20000 perm   4 sec   (5321 perm/sec)   p_kst 2.250000e-03   p_cons 9.154500e-01   p_joint 6.300000e-03

Joint ci ratio: 2.113803e-01	ci left: 1.013476e-02	ci right 1.256126e-02	k: 339	n:30000
Cons ci ratio: 6.934309e-03	ci left: 9.109739e-01	ci right 9.173457e-01	k: 27426	n:30000
KS ci ratio: 4.461444e-01	ci left: 1.996482e-03	ci right 3.169833e-03	k: 76	n:30000
RASGRP4   30000 perm   6 sec   (5064 perm/sec)   p_kst 2.533333e-03   p_cons 9.142000e-01   p_joint 1.130000e-02

Joint ci ratio: 1.353119e-01	ci left: 1.915790e-02	ci right 2.196231e-02	k: 821	n:40000
Cons ci ratio: 6.001271e-03	ci left: 9.115142e-01	ci right 9.170255e-01	k: 36572	n:40000
KS ci ratio: 3.766879e-01	ci left: 2.192729e-03	ci right 3.231562e-03	k: 107	n:40000
RASGRP4   40000 perm   8 sec   (4909 perm/sec)   p_kst 2.675000e-03   p_cons 9.143000e-01   p_joint 2.052500e-02

Joint ci ratio: 1.856276e-01	ci left: 8.019069e-03	ci right 9.678709e-03	k: 441	n:50000
Cons ci ratio: 5.609281e-03	ci left: 9.045623e-01	ci right 9.096703e-01	k: 45357	n:50000
KS ci ratio: 3.239443e-01	ci left: 2.447727e-03	ci right 3.411422e-03	k: 145	n:50000
RASGRP4   50000 perm   10 sec   (4784 perm/sec)   p_kst 2.900000e-03   p_cons 9.071400e-01   p_joint 8.820000e-03

Joint ci ratio: 1.392613e-01	ci left: 1.212501e-02	ci right 1.395588e-02	k: 781	n:60000
Cons ci ratio: 5.095333e-03	ci left: 9.056255e-01	ci right 9.102683e-01	k: 54478	n:60000
KS ci ratio: 2.950450e-01	ci left: 2.501031e-03	ci right 3.381473e-03	k: 175	n:60000
RASGRP4   60000 perm   13 sec   (4656 perm/sec)   p_kst 2.916667e-03   p_cons 9.079667e-01   p_joint 1.301667e-02

Joint ci ratio: 1.360872e-01	ci left: 1.091655e-02	ci right 1.252430e-02	k: 819	n:70000
Cons ci ratio: 4.690936e-03	ci left: 9.067442e-01	ci right 9.110218e-01	k: 63623	n:70000
KS ci ratio: 2.675539e-01	ci left: 2.648417e-03	ci right 3.479337e-03	k: 213	n:70000
RASGRP4   70000 perm   15 sec   (4532 perm/sec)   p_kst 3.042857e-03   p_cons 9.089000e-01   p_joint 1.170000e-02

Joint ci ratio: 1.384227e-01	ci left: 9.237582e-03	ci right 1.062330e-02	k: 793	n:80000
Cons ci ratio: 4.364389e-03	ci left: 9.077812e-01	ci right 9.117641e-01	k: 72783	n:80000
KS ci ratio: 2.470382e-01	ci left: 2.750099e-03	ci right 3.536617e-03	k: 250	n:80000
RASGRP4   80000 perm   18 sec   (4445 perm/sec)   p_kst 3.125000e-03   p_cons 9.097875e-01   p_joint 9.912500e-03

Joint ci ratio: 1.347004e-01	ci left: 8.693936e-03	ci right 9.960215e-03	k: 838	n:90000
Cons ci ratio: 4.126694e-03	ci left: 9.074162e-01	ci right 9.111796e-01	k: 81838	n:90000
KS ci ratio: 2.294214e-01	ci left: 2.862500e-03	ci right 3.614526e-03	k: 290	n:90000
RASGRP4   90000 perm   21 sec   (4360 perm/sec)   p_kst 3.222222e-03   p_cons 9.093111e-01   p_joint 9.311111e-03

Joint ci ratio: 1.349261e-01	ci left: 7.804972e-03	ci right 8.943819e-03	k: 836	n:100000
Cons ci ratio: 3.910426e-03	ci left: 9.077049e-01	ci right 9.112713e-01	k: 90950	n:100000
KS ci ratio: 2.181000e-01	ci left: 2.868885e-03	ci right 3.580412e-03	k: 321	n:100000
RASGRP4   100000 perm   23 sec   (4278 perm/sec)   p_kst 3.210000e-03   p_cons 9.095000e-01   p_joint 8.360000e-03

Joint ci ratio: 1.528271e-01	ci left: 5.490922e-03	ci right 6.408148e-03	k: 653	n:110000
Cons ci ratio: 3.602498e-03	ci left: 9.133364e-01	ci right 9.166416e-01	k: 100650	n:110000
KS ci ratio: 2.045596e-01	ci left: 2.986945e-03	ci right 3.676016e-03	k: 365	n:110000
RASGRP4   110000 perm   26 sec   (4206 perm/sec)   p_kst 3.318182e-03   p_cons 9.150000e-01   p_joint 5.936364e-03

Joint ci ratio: 1.330348e-01	ci left: 6.705239e-03	ci right 7.668808e-03	k: 861	n:120000
Cons ci ratio: 3.452444e-03	ci left: 9.132566e-01	ci right 9.164233e-01	k: 109782	n:120000
KS ci ratio: 2.021106e-01	ci left: 2.809187e-03	ci right 3.448532e-03	k: 374	n:120000
RASGRP4   120000 perm   29 sec   (4133 perm/sec)   p_kst 3.116667e-03   p_cons 9.148500e-01   p_joint 7.175000e-03

Joint ci ratio: 1.173150e-01	ci left: 8.015573e-03	ci right 9.021919e-03	k: 1106	n:130000
Cons ci ratio: 3.314782e-03	ci left: 9.134244e-01	ci right 9.164648e-01	k: 118944	n:130000
KS ci ratio: 1.935256e-01	ci left: 2.841690e-03	ci right 3.457726e-03	k: 408	n:130000
RASGRP4   130000 perm   32 sec   (4063 perm/sec)   p_kst 3.138462e-03   p_cons 9.149538e-01   p_joint 8.507692e-03

Joint ci ratio: 1.230842e-01	ci left: 6.749935e-03	ci right 7.642087e-03	k: 1006	n:140000
Cons ci ratio: 3.193103e-03	ci left: 9.135342e-01	ci right 9.164629e-01	k: 128101	n:140000
KS ci ratio: 1.885282e-01	ci left: 2.788333e-03	ci right 3.375404e-03	k: 430	n:140000
RASGRP4   140000 perm   35 sec   (3999 perm/sec)   p_kst 3.071429e-03   p_cons 9.150071e-01   p_joint 7.185714e-03

Joint ci ratio: 1.209560e-01	ci left: 6.532569e-03	ci right 7.379991e-03	k: 1042	n:150000
Cons ci ratio: 3.084834e-03	ci left: 9.135840e-01	ci right 9.164132e-01	k: 137251	n:150000
KS ci ratio: 1.813076e-01	ci left: 2.824984e-03	ci right 3.394491e-03	k: 465	n:150000
RASGRP4   150000 perm   38 sec   (3942 perm/sec)   p_kst 3.100000e-03   p_cons 9.150067e-01   p_joint 6.946667e-03

Joint ci ratio: 1.170375e-01	ci left: 6.554830e-03	ci right 7.375688e-03	k: 1113	n:160000
Cons ci ratio: 2.990240e-03	ci left: 9.134529e-01	ci right 9.161946e-01	k: 146373	n:160000
KS ci ratio: 1.759176e-01	ci left: 2.821569e-03	ci right 3.371681e-03	k: 494	n:160000
RASGRP4   160000 perm   41 sec   (3885 perm/sec)   p_kst 3.087500e-03   p_cons 9.148312e-01   p_joint 6.956250e-03

Joint ci ratio: 9.920980e-02	ci left: 8.648310e-03	ci right 9.556784e-03	k: 1546	n:170000
Cons ci ratio: 2.896717e-03	ci left: 9.137235e-01	ci right 9.163800e-01	k: 155560	n:170000
KS ci ratio: 1.700078e-01	ci left: 2.852570e-03	ci right 3.388127e-03	k: 529	n:170000
RASGRP4   170000 perm   44 sec   (3832 perm/sec)   p_kst 3.111765e-03   p_cons 9.150588e-01   p_joint 9.094118e-03

Joint ci ratio: 9.650383e-02	ci left: 8.644772e-03	ci right 9.526703e-03	k: 1634	n:180000
Cons ci ratio: 2.816969e-03	ci left: 9.136574e-01	ci right 9.162403e-01	k: 164692	n:180000
KS ci ratio: 1.646562e-01	ci left: 2.880400e-03	ci right 3.402472e-03	k: 564	n:180000
RASGRP4   180000 perm   48 sec   (3777 perm/sec)   p_kst 3.133333e-03   p_cons 9.149556e-01   p_joint 9.077778e-03

Joint ci ratio: 9.553024e-02	ci left: 8.364376e-03	ci right 9.208609e-03	k: 1668	n:190000
Cons ci ratio: 2.744758e-03	ci left: 9.135251e-01	ci right 9.160412e-01	k: 173810	n:190000
KS ci ratio: 1.603170e-01	ci left: 2.885324e-03	ci right 3.393180e-03	k: 595	n:190000
RASGRP4   190000 perm   51 sec   (3723 perm/sec)   p_kst 3.131579e-03   p_cons 9.147895e-01   p_joint 8.778947e-03

Joint ci ratio: 9.639958e-02	ci left: 7.804528e-03	ci right 8.599825e-03	k: 1639	n:200000
Cons ci ratio: 2.674046e-03	ci left: 9.136283e-01	ci right 9.160796e-01	k: 182972	n:200000
KS ci ratio: 1.563037e-01	ci left: 2.889919e-03	ci right 3.384656e-03	k: 626	n:200000
RASGRP4   200000 perm   55 sec   (3668 perm/sec)   p_kst 3.130000e-03   p_cons 9.148600e-01   p_joint 8.195000e-03

Joint ci ratio: 9.627076e-02	ci left: 7.456056e-03	ci right 8.214767e-03	k: 1644	n:210000
Cons ci ratio: 2.609408e-03	ci left: 9.136697e-01	ci right 9.160617e-01	k: 192123	n:210000
KS ci ratio: 1.528107e-01	ci left: 2.885057e-03	ci right 3.366915e-03	k: 655	n:210000
RASGRP4   210000 perm   58 sec   (3615 perm/sec)   p_kst 3.119048e-03   p_cons 9.148714e-01   p_joint 7.828571e-03

Joint ci ratio: 9.614094e-02	ci left: 7.139268e-03	ci right 7.864708e-03	k: 1649	n:220000
Cons ci ratio: 2.547753e-03	ci left: 9.137995e-01	ci right 9.161350e-01	k: 201294	n:220000
KS ci ratio: 1.504255e-01	ci left: 2.845747e-03	ci right 3.312952e-03	k: 676	n:220000
RASGRP4   220000 perm   62 sec   (3564 perm/sec)   p_kst 3.072727e-03   p_cons 9.149727e-01   p_joint 7.495455e-03

Joint ci ratio: 9.548868e-02	ci left: 6.926433e-03	ci right 7.625202e-03	k: 1672	n:230000
Cons ci ratio: 2.491522e-03	ci left: 9.138397e-01	ci right 9.161237e-01	k: 210447	n:230000
KS ci ratio: 1.470954e-01	ci left: 2.851786e-03	ci right 3.308706e-03	k: 707	n:230000
RASGRP4   230000 perm   65 sec   (3514 perm/sec)   p_kst 3.073913e-03   p_cons 9.149870e-01   p_joint 7.269565e-03

Joint ci ratio: 9.482075e-02	ci left: 6.735420e-03	ci right 7.409900e-03	k: 1696	n:240000
Cons ci ratio: 2.438791e-03	ci left: 9.138814e-01	ci right 9.161169e-01	k: 219601	n:240000
KS ci ratio: 1.434909e-01	ci left: 2.877511e-03	ci right 3.326288e-03	k: 743	n:240000
RASGRP4   240000 perm   69 sec   (3468 perm/sec)   p_kst 3.095833e-03   p_cons 9.150042e-01   p_joint 7.066667e-03

Joint ci ratio: 8.897699e-02	ci left: 7.361071e-03	ci right 8.050415e-03	k: 1925	n:250000
Cons ci ratio: 2.390133e-03	ci left: 9.138638e-01	ci right 9.160546e-01	k: 228741	n:250000
KS ci ratio: 1.404102e-01	ci left: 2.889724e-03	ci right 3.329920e-03	k: 776	n:250000
RASGRP4   250000 perm   73 sec   (3422 perm/sec)   p_kst 3.104000e-03   p_cons 9.149640e-01   p_joint 7.700000e-03

Joint ci ratio: 8.758109e-02	ci left: 7.311142e-03	ci right 7.984519e-03	k: 1987	n:260000
Cons ci ratio: 2.343870e-03	ci left: 9.138751e-01	ci right 9.160234e-01	k: 237888	n:260000
KS ci ratio: 1.369275e-01	ci left: 2.927094e-03	ci right 3.361022e-03	k: 816	n:260000
RASGRP4   260000 perm   77 sec   (3377 perm/sec)   p_kst 3.138462e-03   p_cons 9.149538e-01   p_joint 7.642308e-03

Joint ci ratio: 7.661054e-02	ci left: 9.235623e-03	ci right 9.974961e-03	k: 2592	n:270000
Cons ci ratio: 2.298825e-03	ci left: 9.139790e-01	ci right 9.160862e-01	k: 247060	n:270000
KS ci ratio: 1.349615e-01	ci left: 2.904547e-03	ci right 3.328453e-03	k: 840	n:270000
RASGRP4   270000 perm   81 sec   (3334 perm/sec)   p_kst 3.111111e-03   p_cons 9.150370e-01   p_joint 9.600000e-03

Joint ci ratio: 7.878372e-02	ci left: 8.418854e-03	ci right 9.112799e-03	k: 2453	n:280000
Cons ci ratio: 2.253995e-03	ci left: 9.142339e-01	ci right 9.163004e-01	k: 256276	n:280000
KS ci ratio: 1.320858e-01	ci left: 2.928544e-03	ci right 3.346131e-03	k: 877	n:280000
RASGRP4   280000 perm   85 sec   (3291 perm/sec)   p_kst 3.132143e-03   p_cons 9.152714e-01   p_joint 8.760714e-03

Joint ci ratio: 8.150208e-02	ci left: 7.591126e-03	ci right 8.239456e-03	k: 2294	n:290000
Cons ci ratio: 2.215073e-03	ci left: 9.142322e-01	ci right 9.162629e-01	k: 265423	n:290000
KS ci ratio: 1.293155e-01	ci left: 2.954313e-03	ci right 3.366060e-03	k: 915	n:290000
RASGRP4   290000 perm   89 sec   (3250 perm/sec)   p_kst 3.155172e-03   p_cons 9.152517e-01   p_joint 7.910345e-03

Joint ci ratio: 8.032234e-02	ci left: 7.560163e-03	ci right 8.196065e-03	k: 2362	n:300000
Cons ci ratio: 2.252098e-03	ci left: 9.088731e-01	ci right 9.109256e-01	k: 272971	n:300000
KS ci ratio: 1.269129e-01	ci left: 2.968765e-03	ci right 3.374260e-03	k: 950	n:300000
RASGRP4   300000 perm   93 sec   (3209 perm/sec)   p_kst 3.166667e-03   p_cons 9.099033e-01   p_joint 7.873333e-03

Joint ci ratio: 7.891473e-02	ci left: 7.585025e-03	ci right 8.211324e-03	k: 2447	n:310000
Cons ci ratio: 2.214430e-03	ci left: 9.089677e-01	ci right 9.109859e-01	k: 282094	n:310000
KS ci ratio: 1.241352e-01	ci left: 3.007356e-03	ci right 3.408472e-03	k: 993	n:310000
RASGRP4   310000 perm   98 sec   (3171 perm/sec)   p_kst 3.203226e-03   p_cons 9.099806e-01   p_joint 7.893548e-03

Joint ci ratio: 7.973265e-02	ci left: 7.197848e-03	ci right 7.798623e-03	k: 2398	n:320000
Cons ci ratio: 2.177966e-03	ci left: 9.091037e-01	ci right 9.110889e-01	k: 291232	n:320000
KS ci ratio: 1.224236e-01	ci left: 2.998177e-03	ci right 3.392155e-03	k: 1021	n:320000
RASGRP4   320000 perm   102 sec   (3133 perm/sec)   p_kst 3.190625e-03   p_cons 9.101000e-01   p_joint 7.493750e-03

Joint ci ratio: 7.841904e-02	ci left: 7.220336e-03	ci right 7.812604e-03	k: 2479	n:330000
Cons ci ratio: 2.144633e-03	ci left: 9.091250e-01	ci right 9.110799e-01	k: 300335	n:330000
KS ci ratio: 1.205509e-01	ci left: 3.001346e-03	ci right 3.389277e-03	k: 1053	n:330000
RASGRP4   330000 perm   107 sec   (3096 perm/sec)   p_kst 3.190909e-03   p_cons 9.101061e-01   p_joint 7.512121e-03

Joint ci ratio: 7.775162e-02	ci left: 7.131961e-03	ci right 7.711776e-03	k: 2522	n:340000
Cons ci ratio: 2.112556e-03	ci left: 9.091631e-01	ci right 9.110887e-01	k: 309444	n:340000
KS ci ratio: 1.193139e-01	ci left: 2.975834e-03	ci right 3.356242e-03	k: 1075	n:340000
RASGRP4   340000 perm   111 sec   (3059 perm/sec)   p_kst 3.161765e-03   p_cons 9.101294e-01   p_joint 7.417647e-03

Joint ci ratio: 7.684485e-02	ci left: 7.096301e-03	ci right 7.666187e-03	k: 2582	n:350000
Cons ci ratio: 2.080968e-03	ci left: 9.092710e-01	ci right 9.111679e-01	k: 318578	n:350000
KS ci ratio: 1.178989e-01	ci left: 2.962890e-03	ci right 3.336839e-03	k: 1101	n:350000
RASGRP4   350000 perm   116 sec   (3023 perm/sec)   p_kst 3.145714e-03   p_cons 9.102229e-01   p_joint 7.377143e-03

Joint ci ratio: 7.953283e-02	ci left: 6.436102e-03	ci right 6.971885e-03	k: 2412	n:360000
Cons ci ratio: 2.054066e-03	ci left: 9.091079e-01	ci right 9.109799e-01	k: 327617	n:360000
KS ci ratio: 1.163264e-01	ci left: 2.961480e-03	ci right 3.329923e-03	k: 1131	n:360000
RASGRP4   360000 perm   120 sec   (2988 perm/sec)   p_kst 3.141667e-03   p_cons 9.100472e-01   p_joint 6.700000e-03

Joint ci ratio: 7.846707e-02	ci left: 6.437007e-03	ci right 6.965357e-03	k: 2478	n:370000
Cons ci ratio: 2.028073e-03	ci left: 9.089620e-01	ci right 9.108100e-01	k: 336659	n:370000
KS ci ratio: 1.151137e-01	ci left: 2.944426e-03	ci right 3.306668e-03	k: 1155	n:370000
RASGRP4   370000 perm   125 sec   (2952 perm/sec)   p_kst 3.121622e-03   p_cons 9.098892e-01   p_joint 6.697297e-03

Joint ci ratio: 7.790666e-02	ci left: 6.360487e-03	ci right 6.878658e-03	k: 2514	n:380000
Cons ci ratio: 1.999953e-03	ci left: 9.090777e-01	ci right 9.109002e-01	k: 345797	n:380000
KS ci ratio: 1.135527e-01	ci left: 2.948743e-03	ci right 3.306268e-03	k: 1187	n:380000
RASGRP4   380000 perm   130 sec   (2919 perm/sec)   p_kst 3.123684e-03   p_cons 9.099921e-01   p_joint 6.615789e-03

Joint ci ratio: 7.691913e-02	ci left: 6.360838e-03	ci right 6.872175e-03	k: 2579	n:390000
Cons ci ratio: 1.973123e-03	ci left: 9.091748e-01	ci right 9.109730e-01	k: 354930	n:390000
KS ci ratio: 1.125170e-01	ci left: 2.927948e-03	ci right 3.279499e-03	k: 1209	n:390000
RASGRP4   390000 perm   135 sec   (2888 perm/sec)   p_kst 3.100000e-03   p_cons 9.100769e-01   p_joint 6.612821e-03

Joint ci ratio: 7.206647e-02	ci left: 7.077799e-03	ci right 7.609375e-03	k: 2936	n:400000
Cons ci ratio: 1.949218e-03	ci left: 9.091089e-01	ci right 9.108851e-01	k: 364000	n:400000
KS ci ratio: 1.079214e-01	ci left: 3.110031e-03	ci right 3.467224e-03	k: 1314	n:400000
RASGRP4   400000 perm   140 sec   (2857 perm/sec)   p_kst 3.285000e-03   p_cons 9.100000e-01   p_joint 7.340000e-03

Joint ci ratio: 7.196201e-02	ci left: 6.926706e-03	ci right 7.446149e-03	k: 2945	n:410000
Cons ci ratio: 1.923866e-03	ci left: 9.092424e-01	ci right 9.109957e-01	k: 373150	n:410000
KS ci ratio: 1.069510e-01	ci left: 3.091138e-03	ci right 3.442769e-03	k: 1338	n:410000
RASGRP4   410000 perm   145 sec   (2825 perm/sec)   p_kst 3.263415e-03   p_cons 9.101220e-01   p_joint 7.182927e-03

Joint ci ratio: 7.025914e-02	ci left: 7.098567e-03	ci right 7.617788e-03	k: 3089	n:420000
Cons ci ratio: 1.899447e-03	ci left: 9.093720e-01	ci right 9.111033e-01	k: 382301	n:420000
KS ci ratio: 1.056183e-01	ci left: 3.096341e-03	ci right 3.443901e-03	k: 1372	n:420000
RASGRP4   420000 perm   150 sec   (2795 perm/sec)   p_kst 3.266667e-03   p_cons 9.102405e-01   p_joint 7.354762e-03

Joint ci ratio: 6.589496e-02	ci left: 7.893720e-03	ci right 8.433870e-03	k: 3509	n:430000
Cons ci ratio: 1.876787e-03	ci left: 9.094210e-01	ci right 9.111316e-01	k: 391420	n:430000
KS ci ratio: 1.044460e-01	ci left: 3.094532e-03	ci right 3.437797e-03	k: 1403	n:430000
RASGRP4   430000 perm   155 sec   (2768 perm/sec)   p_kst 3.262791e-03   p_cons 9.102791e-01   p_joint 8.160465e-03

Joint ci ratio: 6.511104e-02	ci left: 7.904336e-03	ci right 8.438535e-03	k: 3594	n:440000
Cons ci ratio: 1.854944e-03	ci left: 9.094655e-01	ci right 9.111563e-01	k: 400538	n:440000
KS ci ratio: 1.034204e-01	ci left: 3.086183e-03	ci right 3.424956e-03	k: 1431	n:440000
RASGRP4   440000 perm   160 sec   (2742 perm/sec)   p_kst 3.252273e-03   p_cons 9.103136e-01   p_joint 8.168182e-03

Joint ci ratio: 6.599234e-02	ci left: 7.523170e-03	ci right 8.038753e-03	k: 3500	n:450000
Cons ci ratio: 1.834770e-03	ci left: 9.094256e-01	ci right 9.110980e-01	k: 409619	n:450000
KS ci ratio: 1.021790e-01	ci left: 3.093380e-03	ci right 3.428622e-03	k: 1466	n:450000
RASGRP4   450000 perm   166 sec   (2715 perm/sec)   p_kst 3.257778e-03   p_cons 9.102644e-01   p_joint 7.777778e-03

Joint ci ratio: 6.481451e-02	ci left: 7.633347e-03	ci right 8.146793e-03	k: 3628	n:460000
Cons ci ratio: 1.815361e-03	ci left: 9.093767e-01	ci right 9.110312e-01	k: 418695	n:460000
KS ci ratio: 1.007124e-01	ci left: 3.117241e-03	ci right 3.449934e-03	k: 1509	n:460000
RASGRP4   460000 perm   171 sec   (2689 perm/sec)   p_kst 3.280435e-03   p_cons 9.102065e-01   p_joint 7.886957e-03

Joint ci ratio: 6.406811e-02	ci left: 7.648874e-03	ci right 8.157220e-03	k: 3713	n:470000
Cons ci ratio: 1.795782e-03	ci left: 9.094004e-01	ci right 9.110371e-01	k: 427804	n:470000
KS ci ratio: 9.962964e-02	ci left: 3.119370e-03	ci right 3.448502e-03	k: 1542	n:470000
RASGRP4   470000 perm   176 sec   (2665 perm/sec)   p_kst 3.280851e-03   p_cons 9.102213e-01   p_joint 7.900000e-03

Outputting figure to mutsig2_images.part000000000144/RASGRP4.5_2090_470000_0.0032809_0.91022_0.0079.png
                gene_name: RASGRP4
               theta_stop: 0.100 
                    nperm: 470000 
                     p_ks: 0.0033 
        ci_ks_bounds_left: 0.0031 
       ci_ks_bounds_right: 0.0034 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.0079 
     ci_joint_bounds_left: 0.0076 
    ci_joint_bounds_right: 0.0082 

Current progress: 22 percent done.
RBL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.681647e-02	ci left: 8.373491e-01	ci right 8.516496e-01	k: 8446	n:10000
Cons ci ratio: 1.218871e-02	ci left: 9.061740e-01	ci right 9.173848e-01	k: 9119	n:10000
KS ci ratio: 2.689535e-02	ci left: 6.706551e-01	ci right 6.890400e-01	k: 6799	n:10000
RBL1   10000 perm   2 sec   (5071 perm/sec)   p_kst 6.799000e-01   p_cons 9.119000e-01   p_joint 8.446000e-01

Outputting figure to mutsig2_images.part000000000144/RBL1.5_3304_10000_0.6799_0.9119_0.8446.png
                gene_name: RBL1
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 25 percent done.
RBM12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.742002e-02	ci left: 3.086781e-01	ci right 3.270281e-01	k: 3178	n:10000
Cons ci ratio: 9.309272e-02	ci left: 1.435445e-01	ci right 1.576597e-01	k: 1505	n:10000
KS ci ratio: 2.518543e-02	ci left: 6.987770e-01	ci right 7.167018e-01	k: 7078	n:10000
RBM12   10000 perm   2 sec   (5577 perm/sec)   p_kst 7.078000e-01   p_cons 1.505000e-01   p_joint 3.178000e-01

Outputting figure to mutsig2_images.part000000000144/RBM12.5_2803_10000_0.7078_0.1505_0.3178.png
                gene_name: RBM12
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 28 percent done.
RASSF8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.296845e-02	ci left: 2.704228e-01	ci right 2.881060e-01	k: 2792	n:10000
Cons ci ratio: 9.596083e-02	ci left: 1.360954e-01	ci right 1.499133e-01	k: 1429	n:10000
KS ci ratio: 4.469450e-02	ci left: 4.249543e-01	ci right 4.444837e-01	k: 4347	n:10000
RASSF8   10000 perm   2 sec   (6110 perm/sec)   p_kst 4.347000e-01   p_cons 1.429000e-01   p_joint 2.792000e-01

Outputting figure to mutsig2_images.part000000000144/RASSF8.4_1321_10000_0.4347_0.1429_0.2792.png
                gene_name: RASSF8
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 30 percent done.
RAVER1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.010923e-01	ci left: 1.240539e-01	ci right 1.373620e-01	k: 1306	n:10000
Cons ci ratio: 9.553251e-02	ci left: 1.371732e-01	ci right 1.510349e-01	k: 1440	n:10000
KS ci ratio: 1.049122e-01	ci left: 1.160369e-01	ci right 1.289839e-01	k: 1224	n:10000
RAVER1   10000 perm   2 sec   (5623 perm/sec)   p_kst 1.224000e-01   p_cons 1.440000e-01   p_joint 1.306000e-01

Joint ci ratio: 9.758882e-02	ci left: 7.099564e-02	ci right 7.832859e-02	k: 1492	n:20000
Cons ci ratio: 7.064720e-02	ci left: 1.286671e-01	ci right 1.381397e-01	k: 2667	n:20000
KS ci ratio: 7.549048e-02	ci left: 1.142973e-01	ci right 1.233138e-01	k: 2375	n:20000
RAVER1   20000 perm   4 sec   (5089 perm/sec)   p_kst 1.187500e-01   p_cons 1.333500e-01   p_joint 7.460000e-02

Outputting figure to mutsig2_images.part000000000144/RAVER1.4_2323_20000_0.11875_0.13335_0.0746.png
                gene_name: RAVER1
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.075 
     ci_joint_bounds_left: 0.071 
    ci_joint_bounds_right: 0.078 

Current progress: 32 percent done.
RBBP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.189000e-02	ci left: 5.920266e-01	ci right 6.113142e-01	k: 6017	n:10000
Cons ci ratio: 1.958849e-02	ci left: 7.922262e-01	ci right 8.079986e-01	k: 8002	n:10000
KS ci ratio: 4.417103e-02	ci left: 4.307383e-01	ci right 4.502963e-01	k: 4405	n:10000
RBBP6   10000 perm   2 sec   (4771 perm/sec)   p_kst 4.405000e-01   p_cons 8.002000e-01   p_joint 6.017000e-01

Outputting figure to mutsig2_images.part000000000144/RBBP6.4_5505_10000_0.4405_0.8002_0.6017.png
                gene_name: RBBP6
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 35 percent done.
RBM11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.753367e-01	ci left: 4.341336e-02	ci right 5.185268e-02	k: 475	n:10000
Cons ci ratio: 2.750894e-01	ci left: 1.716007e-02	ci right 2.272454e-02	k: 198	n:10000
KS ci ratio: 4.891266e-02	ci left: 3.814188e-01	ci right 4.006447e-01	k: 3910	n:10000
RBM11   10000 perm   2 sec   (6465 perm/sec)   p_kst 3.910000e-01   p_cons 1.980000e-02   p_joint 4.750000e-02

Joint ci ratio: 7.904471e-02	ci left: 1.051552e-01	ci right 1.138587e-01	k: 2189	n:20000
Cons ci ratio: 1.999736e-01	ci left: 1.696289e-02	ci right 2.077881e-02	k: 376	n:20000
KS ci ratio: 3.472459e-02	ci left: 3.823844e-01	ci right 3.959478e-01	k: 7783	n:20000
RBM11   20000 perm   3 sec   (5774 perm/sec)   p_kst 3.891500e-01   p_cons 1.880000e-02   p_joint 1.094500e-01

Joint ci ratio: 8.548467e-02	ci left: 6.269323e-02	ci right 6.832461e-02	k: 1964	n:30000
Cons ci ratio: 1.654543e-01	ci left: 1.684538e-02	ci right 1.991557e-02	k: 550	n:30000
KS ci ratio: 2.819210e-02	ci left: 3.863367e-01	ci right 3.974176e-01	k: 11756	n:30000
RBM11   30000 perm   5 sec   (5509 perm/sec)   p_kst 3.918667e-01   p_cons 1.833333e-02   p_joint 6.546667e-02

Joint ci ratio: 6.492377e-02	ci left: 8.080682e-02	ci right 8.625382e-02	k: 3340	n:40000
Cons ci ratio: 1.396219e-01	ci left: 1.797425e-02	ci right 2.069616e-02	k: 772	n:40000
KS ci ratio: 2.442145e-02	ci left: 3.869618e-01	ci right 3.965539e-01	k: 15670	n:40000
RBM11   40000 perm   8 sec   (5326 perm/sec)   p_kst 3.917500e-01   p_cons 1.930000e-02   p_joint 8.350000e-02

Joint ci ratio: 6.573455e-02	ci left: 6.421316e-02	ci right 6.859735e-02	k: 3319	n:50000
Cons ci ratio: 1.245047e-01	ci left: 1.822840e-02	ci right 2.066785e-02	k: 971	n:50000
KS ci ratio: 2.181274e-02	ci left: 3.881364e-01	ci right 3.967161e-01	k: 19621	n:50000
RBM11   50000 perm   10 sec   (5185 perm/sec)   p_kst 3.924200e-01   p_cons 1.942000e-02   p_joint 6.638000e-02

Joint ci ratio: 5.906008e-02	ci left: 6.637631e-02	ci right 7.043223e-02	k: 4103	n:60000
Cons ci ratio: 1.138762e-01	ci left: 1.826274e-02	ci right 2.048410e-02	k: 1161	n:60000
KS ci ratio: 1.992293e-02	ci left: 3.882570e-01	ci right 3.960867e-01	k: 23530	n:60000
RBM11   60000 perm   12 sec   (5059 perm/sec)   p_kst 3.921667e-01   p_cons 1.935000e-02   p_joint 6.838333e-02

Joint ci ratio: 5.952328e-02	ci left: 5.660360e-02	ci right 6.009026e-02	k: 4083	n:70000
Cons ci ratio: 1.058544e-01	ci left: 1.819625e-02	ci right 2.024388e-02	k: 1344	n:70000
KS ci ratio: 1.846320e-02	ci left: 3.880814e-01	ci right 3.953276e-01	k: 27419	n:70000
RBM11   70000 perm   14 sec   (4945 perm/sec)   p_kst 3.917000e-01   p_cons 1.920000e-02   p_joint 5.832857e-02

Joint ci ratio: 5.580242e-02	ci left: 5.647642e-02	ci right 5.973072e-02	k: 4647	n:80000
Cons ci ratio: 9.951879e-02	ci left: 1.807737e-02	ci right 1.998274e-02	k: 1521	n:80000
KS ci ratio: 1.738688e-02	ci left: 3.851328e-01	ci right 3.919003e-01	k: 31081	n:80000
RBM11   80000 perm   17 sec   (4844 perm/sec)   p_kst 3.885125e-01   p_cons 1.901250e-02   p_joint 5.808750e-02

Outputting figure to mutsig2_images.part000000000144/RBM11.4_866_80000_0.38851_0.019013_0.058088.png
                gene_name: RBM11
               theta_stop: 0.100 
                    nperm: 80000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.019 
      ci_cons_bounds_left: 0.018 
     ci_cons_bounds_right: 0.020 
                  p_joint: 0.058 
     ci_joint_bounds_left: 0.056 
    ci_joint_bounds_right: 0.060 

Current progress: 38 percent done.
RASSF7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.198959e-02	ci left: 4.557846e-01	ci right 4.754354e-01	k: 4656	n:10000
Cons ci ratio: 5.872968e-02	ci left: 2.990576e-01	ci right 3.172542e-01	k: 3081	n:10000
KS ci ratio: 3.836432e-02	ci left: 5.008505e-01	ci right 5.205433e-01	k: 5107	n:10000
RASSF7   10000 perm   2 sec   (6433 perm/sec)   p_kst 5.107000e-01   p_cons 3.081000e-01   p_joint 4.656000e-01

Outputting figure to mutsig2_images.part000000000144/RASSF7.3_1205_10000_0.5107_0.3081_0.4656.png
                gene_name: RASSF7
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 40 percent done.
RBAK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.693860e-02	ci left: 6.699500e-01	ci right 6.883455e-01	k: 6792	n:10000
Cons ci ratio: 5.230103e-02	ci left: 3.501865e-01	ci right 3.690954e-01	k: 3596	n:10000
KS ci ratio: 2.091580e-02	ci left: 7.701294e-01	ci right 7.865082e-01	k: 7784	n:10000
RBAK   10000 perm   2 sec   (6046 perm/sec)   p_kst 7.784000e-01   p_cons 3.596000e-01   p_joint 6.792000e-01

Outputting figure to mutsig2_images.part000000000144/RBAK.3_2161_10000_0.7784_0.3596_0.6792.png
                gene_name: RBAK
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 42 percent done.
RBM45
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.834238e-02	ci left: 8.127337e-01	ci right 8.278793e-01	k: 8204	n:10000
KS ci ratio: 2.249299e-02	ci left: 7.437166e-01	ci right 7.607363e-01	k: 7523	n:10000
RBM45   10000 perm   2 sec   (6261 perm/sec)   p_kst 7.523000e-01   p_cons 8.204000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000144/RBM45.3_1461_10000_0.7523_0.8204_1.png
                gene_name: RBM45
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 45 percent done.
RBM6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.411746e-02	ci left: 7.165376e-01	ci right 7.341309e-01	k: 7254	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
RBM6   10000 perm   2 sec   (5344 perm/sec)   p_kst 1   p_cons 7.254000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000144/RBM6.3_3452_10000_1_0.7254_1.png
                gene_name: RBM6
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 48 percent done.
RBMXL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.276542e-02	ci left: 4.467012e-01	ci right 4.663241e-01	k: 4565	n:10000
Cons ci ratio: 3.913147e-02	ci left: 4.909512e-01	ci right 5.106484e-01	k: 5008	n:10000
KS ci ratio: 6.411390e-02	ci left: 2.632958e-01	ci right 2.808372e-01	k: 2720	n:10000
RBMXL1   10000 perm   2 sec   (6355 perm/sec)   p_kst 2.720000e-01   p_cons 5.008000e-01   p_joint 4.565000e-01

Outputting figure to mutsig2_images.part000000000144/RBMXL1.3_1177_10000_0.272_0.5008_0.4565.png
                gene_name: RBMXL1
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 50 percent done.
RBMXL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.295281e-02	ci left: 2.705218e-01	ci right 2.882069e-01	k: 2793	n:10000
Cons ci ratio: 7.389568e-02	ci left: 2.114201e-01	ci right 2.277435e-01	k: 2195	n:10000
KS ci ratio: 5.852375e-02	ci left: 3.005450e-01	ci right 3.187660e-01	k: 3096	n:10000
RBMXL2   10000 perm   2 sec   (6155 perm/sec)   p_kst 3.096000e-01   p_cons 2.195000e-01   p_joint 2.793000e-01

Outputting figure to mutsig2_images.part000000000144/RBMXL2.3_1183_10000_0.3096_0.2195_0.2793.png
                gene_name: RBMXL2
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 52 percent done.
RASIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.449914e-02	ci left: 8.731632e-01	ci right 8.860148e-01	k: 8797	n:10000
KS ci ratio: 1.309951e-02	ci left: 8.935428e-01	ci right 9.054233e-01	k: 8996	n:10000
RASIP1   10000 perm   2 sec   (5879 perm/sec)   p_kst 8.996000e-01   p_cons 8.797000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000144/RASIP1.2_2936_10000_0.8996_0.8797_1.png
                gene_name: RASIP1
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 55 percent done.
RAVER2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.175662e-02	ci left: 7.560573e-01	ci right 7.727884e-01	k: 7645	n:10000
Cons ci ratio: 5.238060e-02	ci left: 3.494907e-01	ci right 3.683915e-01	k: 3589	n:10000
KS ci ratio: 3.612419e-02	ci left: 5.308720e-01	ci right 5.505042e-01	k: 5407	n:10000
RAVER2   10000 perm   2 sec   (6462 perm/sec)   p_kst 5.407000e-01   p_cons 3.589000e-01   p_joint 7.645000e-01

Outputting figure to mutsig2_images.part000000000144/RAVER2.2_2085_10000_0.5407_0.3589_0.7645.png
                gene_name: RAVER2
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 57 percent done.
RBM10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.444432e-02	ci left: 8.739813e-01	ci right 8.867962e-01	k: 8805	n:10000
Cons ci ratio: 1.291762e-02	ci left: 8.961077e-01	ci right 9.078569e-01	k: 9021	n:10000
KS ci ratio: 3.293129e-02	ci left: 5.764730e-01	ci right 5.958768e-01	k: 5862	n:10000
RBM10   10000 perm   2 sec   (5775 perm/sec)   p_kst 5.862000e-01   p_cons 9.021000e-01   p_joint 8.805000e-01

Outputting figure to mutsig2_images.part000000000144/RBM10.2_2885_10000_0.5862_0.9021_0.8805.png
                gene_name: RBM10
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.89 

Current progress: 60 percent done.
RBM12B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.881972e-02	ci left: 4.949504e-01	ci right 5.146468e-01	k: 5048	n:10000
Cons ci ratio: 5.438552e-02	ci left: 3.325008e-01	ci right 3.511914e-01	k: 3418	n:10000
KS ci ratio: 3.626257e-02	ci left: 5.289696e-01	ci right 5.486078e-01	k: 5388	n:10000
RBM12B   10000 perm   2 sec   (6035 perm/sec)   p_kst 5.388000e-01   p_cons 3.418000e-01   p_joint 5.048000e-01

Outputting figure to mutsig2_images.part000000000144/RBM12B.2_3010_10000_0.5388_0.3418_0.5048.png
                gene_name: RBM12B
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 62 percent done.
RBM19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.330595e-02	ci left: 5.709563e-01	ci right 5.903967e-01	k: 5807	n:10000
Cons ci ratio: 2.149680e-02	ci left: 7.604092e-01	ci right 7.770340e-01	k: 7688	n:10000
KS ci ratio: 7.724115e-02	ci left: 1.968288e-01	ci right 2.127436e-01	k: 2047	n:10000
RBM19   10000 perm   2 sec   (5658 perm/sec)   p_kst 2.047000e-01   p_cons 7.688000e-01   p_joint 5.807000e-01

Outputting figure to mutsig2_images.part000000000144/RBM19.2_2979_10000_0.2047_0.7688_0.5807.png
                gene_name: RBM19
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 65 percent done.
RBM22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.618554e-02	ci left: 3.181047e-01	ci right 3.365960e-01	k: 3273	n:10000
Cons ci ratio: 1.322954e-02	ci left: 8.916967e-01	ci right 9.036705e-01	k: 8978	n:10000
KS ci ratio: 7.852074e-02	ci left: 1.916074e-01	ci right 2.073681e-01	k: 1994	n:10000
RBM22   10000 perm   2 sec   (6465 perm/sec)   p_kst 1.994000e-01   p_cons 8.978000e-01   p_joint 3.273000e-01

Outputting figure to mutsig2_images.part000000000144/RBM22.2_1307_10000_0.1994_0.8978_0.3273.png
                gene_name: RBM22
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 68 percent done.
RBM25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.464252e-02	ci left: 8.710161e-01	ci right 8.839631e-01	k: 8776	n:10000
Cons ci ratio: 8.735789e-02	ci left: 1.602287e-01	ci right 1.749655e-01	k: 1675	n:10000
KS ci ratio: 1.828014e-02	ci left: 8.137498e-01	ci right 8.288626e-01	k: 8214	n:10000
RBM25   10000 perm   2 sec   (6000 perm/sec)   p_kst 8.214000e-01   p_cons 1.675000e-01   p_joint 8.776000e-01

Outputting figure to mutsig2_images.part000000000144/RBM25.2_2604_10000_0.8214_0.1675_0.8776.png
                gene_name: RBM25
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 70 percent done.
RBM27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.489076e-01	ci left: 2.118344e-02	ci right 2.729802e-02	k: 241	n:10000
Cons ci ratio: 9.103792e-02	ci left: 1.492334e-01	ci right 1.635673e-01	k: 1563	n:10000
KS ci ratio: 3.650251e-01	ci left: 9.321618e-03	ci right 1.357016e-02	k: 113	n:10000
RBM27   10000 perm   2 sec   (5727 perm/sec)   p_kst 1.130000e-02   p_cons 1.563000e-01   p_joint 2.410000e-02

Joint ci ratio: 4.012173e-01	ci left: 3.799699e-03	ci right 5.748583e-03	k: 94	n:20000
Cons ci ratio: 6.479246e-02	ci left: 1.496644e-01	ci right 1.597362e-01	k: 3093	n:20000
KS ci ratio: 2.634284e-01	ci left: 9.507427e-03	ci right 1.243735e-02	k: 218	n:20000
RBM27   20000 perm   4 sec   (5104 perm/sec)   p_kst 1.090000e-02   p_cons 1.546500e-01   p_joint 4.700000e-03

Joint ci ratio: 1.234163e-01	ci left: 3.052214e-02	ci right 3.456905e-02	k: 975	n:30000
Cons ci ratio: 5.291659e-02	ci left: 1.505260e-01	ci right 1.587410e-01	k: 4638	n:30000
KS ci ratio: 2.172740e-01	ci left: 9.566664e-03	ci right 1.192952e-02	k: 321	n:30000
RBM27   30000 perm   6 sec   (4873 perm/sec)   p_kst 1.070000e-02   p_cons 1.546000e-01   p_joint 3.250000e-02

Joint ci ratio: 9.235189e-02	ci left: 4.110612e-02	ci right 4.511056e-02	k: 1723	n:40000
Cons ci ratio: 4.575870e-02	ci left: 1.514660e-01	ci right 1.585841e-01	k: 6200	n:40000
KS ci ratio: 1.928357e-01	ci left: 9.238511e-03	ci right 1.123355e-02	k: 408	n:40000
RBM27   40000 perm   8 sec   (4716 perm/sec)   p_kst 1.020000e-02   p_cons 1.550000e-01   p_joint 4.307500e-02

Joint ci ratio: 7.291896e-02	ci left: 5.264412e-02	ci right 5.664779e-02	k: 2731	n:50000
Cons ci ratio: 4.086007e-02	ci left: 1.522742e-01	ci right 1.586458e-01	k: 7772	n:50000
KS ci ratio: 1.737267e-01	ci left: 9.203821e-03	ci right 1.097375e-02	k: 503	n:50000
RBM27   50000 perm   11 sec   (4595 perm/sec)   p_kst 1.006000e-02   p_cons 1.554400e-01   p_joint 5.462000e-02

Joint ci ratio: 7.903618e-02	ci left: 3.782463e-02	ci right 4.095346e-02	k: 2362	n:60000
Cons ci ratio: 3.740596e-02	ci left: 1.518149e-01	ci right 1.576185e-01	k: 9282	n:60000
KS ci ratio: 1.562327e-01	ci left: 9.571629e-03	ci right 1.120958e-02	k: 622	n:60000
RBM27   60000 perm   13 sec   (4490 perm/sec)   p_kst 1.036667e-02   p_cons 1.547000e-01   p_joint 3.936667e-02

Joint ci ratio: 4.675028e-02	ci left: 8.913367e-02	ci right 9.341457e-02	k: 6388	n:70000
Cons ci ratio: 3.467320e-02	ci left: 1.517163e-01	ci right 1.570838e-01	k: 10807	n:70000
KS ci ratio: 1.446268e-01	ci left: 9.634129e-03	ci right 1.114973e-02	k: 726	n:70000
RBM27   70000 perm   16 sec   (4385 perm/sec)   p_kst 1.037143e-02   p_cons 1.543857e-01   p_joint 9.125714e-02

Joint ci ratio: 4.335208e-02	ci left: 9.071128e-02	ci right 9.474331e-02	k: 7417	n:80000
Cons ci ratio: 3.243538e-02	ci left: 1.518776e-01	ci right 1.568975e-01	k: 12350	n:80000
KS ci ratio: 1.349466e-01	ci left: 9.732722e-03	ci right 1.115312e-02	k: 834	n:80000
RBM27   80000 perm   19 sec   (4294 perm/sec)   p_kst 1.042500e-02   p_cons 1.543750e-01   p_joint 9.271250e-02

Joint ci ratio: 5.751653e-02	ci left: 4.766444e-02	ci right 5.049805e-02	k: 4416	n:90000
Cons ci ratio: 3.053994e-02	ci left: 1.523652e-01	ci right 1.571016e-01	k: 13925	n:90000
KS ci ratio: 1.271862e-01	ci left: 9.779757e-03	ci right 1.111874e-02	k: 939	n:90000
RBM27   90000 perm   21 sec   (4217 perm/sec)   p_kst 1.043333e-02   p_cons 1.547222e-01   p_joint 4.906667e-02

Joint ci ratio: 4.679942e-02	ci left: 6.402366e-02	ci right 6.710159e-02	k: 6555	n:100000
Cons ci ratio: 2.895319e-02	ci left: 1.526626e-01	ci right 1.571575e-01	k: 15490	n:100000
KS ci ratio: 1.216906e-01	ci left: 9.644665e-03	ci right 1.090398e-02	k: 1026	n:100000
RBM27   100000 perm   24 sec   (4138 perm/sec)   p_kst 1.026000e-02   p_cons 1.549000e-01   p_joint 6.555000e-02

Joint ci ratio: 4.291887e-02	ci left: 6.897603e-02	ci right 7.201030e-02	k: 7753	n:110000
Cons ci ratio: 2.758865e-02	ci left: 1.529292e-01	ci right 1.572163e-01	k: 17057	n:110000
KS ci ratio: 1.158566e-01	ci left: 9.702909e-03	ci right 1.090494e-02	k: 1132	n:110000
RBM27   110000 perm   27 sec   (4067 perm/sec)   p_kst 1.029091e-02   p_cons 1.550636e-01   p_joint 7.048182e-02

Joint ci ratio: 4.398652e-02	ci left: 6.070797e-02	ci right 6.344657e-02	k: 7448	n:120000
Cons ci ratio: 2.643912e-02	ci left: 1.527742e-01	ci right 1.568758e-01	k: 18578	n:120000
KS ci ratio: 1.101614e-01	ci left: 9.866122e-03	ci right 1.102439e-02	k: 1252	n:120000
RBM27   120000 perm   30 sec   (4004 perm/sec)   p_kst 1.043333e-02   p_cons 1.548167e-01   p_joint 6.206667e-02

Joint ci ratio: 4.397948e-02	ci left: 5.632431e-02	ci right 5.886470e-02	k: 7486	n:130000
Cons ci ratio: 2.539536e-02	ci left: 1.529218e-01	ci right 1.568629e-01	k: 20135	n:130000
KS ci ratio: 1.059350e-01	ci left: 9.870605e-03	ci right 1.098216e-02	k: 1354	n:130000
RBM27   130000 perm   33 sec   (3942 perm/sec)   p_kst 1.041538e-02   p_cons 1.548846e-01   p_joint 5.758462e-02

Joint ci ratio: 4.072737e-02	ci left: 6.079888e-02	ci right 6.333358e-02	k: 8688	n:140000
Cons ci ratio: 2.446486e-02	ci left: 1.530652e-01	ci right 1.568634e-01	k: 21694	n:140000
KS ci ratio: 1.019838e-01	ci left: 9.909988e-03	ci right 1.098186e-02	k: 1461	n:140000
RBM27   140000 perm   36 sec   (3882 perm/sec)   p_kst 1.043571e-02   p_cons 1.549571e-01   p_joint 6.205714e-02

Joint ci ratio: 4.080465e-02	ci left: 5.677612e-02	ci right 5.914767e-02	k: 8693	n:150000
Cons ci ratio: 2.362727e-02	ci left: 1.532183e-01	ci right 1.568883e-01	k: 23257	n:150000
KS ci ratio: 9.847586e-02	ci left: 9.938283e-03	ci right 1.097410e-02	k: 1567	n:150000
RBM27   150000 perm   39 sec   (3822 perm/sec)   p_kst 1.044667e-02   p_cons 1.550467e-01   p_joint 5.795333e-02

Outputting figure to mutsig2_images.part000000000144/RBM27.2_3267_150000_0.010447_0.15505_0.057953.png
                gene_name: RBM27
               theta_stop: 0.098 
                    nperm: 150000 
                     p_ks: 0.010 
        ci_ks_bounds_left: 0.0099 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.058 
     ci_joint_bounds_left: 0.057 
    ci_joint_bounds_right: 0.059 

Current progress: 72 percent done.
RBM33
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.880239e-03	ci left: 9.666774e-01	ci right 9.734451e-01	k: 9702	n:10000
KS ci ratio: 5.083495e-02	ci left: 3.633108e-01	ci right 3.823633e-01	k: 3728	n:10000
RBM33   10000 perm   2 sec   (5578 perm/sec)   p_kst 3.728000e-01   p_cons 9.702000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000144/RBM33.2_3585_10000_0.3728_0.9702_1.png
                gene_name: RBM33
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
RBM38
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.664246e-03	ci left: 9.491889e-01	ci right 9.575444e-01	k: 9535	n:10000
Cons ci ratio: 1.883815e-01	ci left: 3.757958e-02	ci right 4.549032e-02	k: 414	n:10000
KS ci ratio: 6.183069e-02	ci left: 2.777507e-01	ci right 2.955737e-01	k: 2866	n:10000
RBM38   10000 perm   1 sec   (7143 perm/sec)   p_kst 2.866000e-01   p_cons 4.140000e-02   p_joint 9.535000e-01

Joint ci ratio: 4.907458e-03	ci left: 9.671782e-01	ci right 9.719840e-01	k: 19393	n:20000
Cons ci ratio: 1.344817e-01	ci left: 3.800349e-02	ci right 4.353104e-02	k: 814	n:20000
KS ci ratio: 4.354540e-02	ci left: 2.820284e-01	ci right 2.946332e-01	k: 5766	n:20000
RBM38   20000 perm   3 sec   (6247 perm/sec)   p_kst 2.883000e-01   p_cons 4.070000e-02   p_joint 9.696500e-01

Joint ci ratio: 6.851501e-03	ci left: 9.128718e-01	ci right 9.191807e-01	k: 27482	n:30000
Cons ci ratio: 1.099219e-01	ci left: 3.842706e-02	ci right 4.292912e-02	k: 1219	n:30000
KS ci ratio: 3.566913e-02	ci left: 2.818853e-01	ci right 2.921560e-01	k: 8610	n:30000
RBM38   30000 perm   5 sec   (5888 perm/sec)   p_kst 2.870000e-01   p_cons 4.063333e-02   p_joint 9.160667e-01

Joint ci ratio: 3.434837e-03	ci left: 9.685123e-01	ci right 9.718689e-01	k: 38809	n:40000
Cons ci ratio: 9.530756e-02	ci left: 3.863795e-02	ci right 4.252911e-02	k: 1622	n:40000
KS ci ratio: 3.097425e-02	ci left: 2.814752e-01	ci right 2.903559e-01	k: 11436	n:40000
RBM38   40000 perm   7 sec   (5675 perm/sec)   p_kst 2.859000e-01   p_cons 4.055000e-02   p_joint 9.702250e-01

Outputting figure to mutsig2_images.part000000000144/RBM38.2_495_40000_0.2859_0.04055_0.97023.png
                gene_name: RBM38
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.041 
      ci_cons_bounds_left: 0.039 
     ci_cons_bounds_right: 0.043 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.97 

Current progress: 78 percent done.
RBM39
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.307477e-02	ci left: 1.744810e-01	ci right 1.897046e-01	k: 1820	n:10000
KS ci ratio: 9.667188e-02	ci left: 1.343321e-01	ci right 1.480776e-01	k: 1411	n:10000
RBM39   10000 perm   2 sec   (6615 perm/sec)   p_kst 1.411000e-01   p_cons 1.820000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000144/RBM39.2_1657_10000_0.1411_0.182_1.png
                gene_name: RBM39
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
RBM42
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.929979e-02	ci left: 2.339280e-01	ci right 2.508223e-01	k: 2423	n:10000
Cons ci ratio: 6.504931e-02	ci left: 2.576556e-01	ci right 2.750807e-01	k: 2663	n:10000
KS ci ratio: 9.935064e-02	ci left: 1.279678e-01	ci right 1.414457e-01	k: 1346	n:10000
RBM42   10000 perm   2 sec   (6547 perm/sec)   p_kst 1.346000e-01   p_cons 2.663000e-01   p_joint 2.423000e-01

Outputting figure to mutsig2_images.part000000000144/RBM42.2_1483_10000_0.1346_0.2663_0.2423.png
                gene_name: RBM42
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 82 percent done.
RBM47
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.805849e-02	ci left: 5.048513e-01	ci right 5.245401e-01	k: 5147	n:10000
Cons ci ratio: 3.439163e-02	ci left: 5.552156e-01	ci right 5.747465e-01	k: 5650	n:10000
KS ci ratio: 4.710281e-02	ci left: 3.994411e-01	ci right 4.188118e-01	k: 4091	n:10000
RBM47   10000 perm   2 sec   (6307 perm/sec)   p_kst 4.091000e-01   p_cons 5.650000e-01   p_joint 5.147000e-01

Outputting figure to mutsig2_images.part000000000144/RBM47.2_1798_10000_0.4091_0.565_0.5147.png
                gene_name: RBM47
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 85 percent done.
RBM5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.941957e-02	ci left: 3.765422e-01	ci right 3.957242e-01	k: 3861	n:10000
Cons ci ratio: 1.373534e-02	ci left: 8.844205e-01	ci right 8.967510e-01	k: 8907	n:10000
KS ci ratio: 7.570976e-02	ci left: 2.033338e-01	ci right 2.194347e-01	k: 2113	n:10000
RBM5   10000 perm   2 sec   (6006 perm/sec)   p_kst 2.113000e-01   p_cons 8.907000e-01   p_joint 3.861000e-01

Outputting figure to mutsig2_images.part000000000144/RBM5.2_2544_10000_0.2113_0.8907_0.3861.png
                gene_name: RBM5
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 88 percent done.
RBM8A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.619083e-02	ci left: 8.472320e-01	ci right 8.611609e-01	k: 8543	n:10000
Cons ci ratio: 5.068314e-02	ci left: 3.647032e-01	ci right 3.837701e-01	k: 3742	n:10000
KS ci ratio: 1.653384e-02	ci left: 8.418309e-01	ci right 8.559652e-01	k: 8490	n:10000
RBM8A   10000 perm   1 sec   (7069 perm/sec)   p_kst 8.490000e-01   p_cons 3.742000e-01   p_joint 8.543000e-01

Outputting figure to mutsig2_images.part000000000144/RBM8A.2_549_10000_0.849_0.3742_0.8543.png
                gene_name: RBM8A
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 90 percent done.
RBM9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.324244e-02	ci left: 4.412128e-01	ci right 4.608157e-01	k: 4510	n:10000
Cons ci ratio: 4.826174e-02	ci left: 3.877898e-01	ci right 4.070700e-01	k: 3974	n:10000
KS ci ratio: 7.463647e-02	ci left: 2.080667e-01	ci right 2.242990e-01	k: 2161	n:10000
RBM9   10000 perm   2 sec   (6577 perm/sec)   p_kst 2.161000e-01   p_cons 3.974000e-01   p_joint 4.510000e-01

Outputting figure to mutsig2_images.part000000000144/RBM9.2_1453_10000_0.2161_0.3974_0.451.png
                gene_name: RBM9
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 92 percent done.
RBMS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.115922e-02	ci left: 9.197660e-01	ci right 9.301849e-01	k: 9251	n:10000
KS ci ratio: 2.055178e-02	ci left: 7.762076e-01	ci right 7.924264e-01	k: 7844	n:10000
RBMS1   10000 perm   2 sec   (6640 perm/sec)   p_kst 7.844000e-01   p_cons 9.251000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000144/RBMS1.2_1273_10000_0.7844_0.9251_1.png
                gene_name: RBMS1
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
RBMS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.685487e-02	ci left: 8.367382e-01	ci right 8.510609e-01	k: 8440	n:10000
KS ci ratio: 2.477813e-02	ci left: 7.055362e-01	ci right 7.233387e-01	k: 7145	n:10000
RBMS2   10000 perm   1 sec   (6757 perm/sec)   p_kst 7.145000e-01   p_cons 8.440000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000144/RBMS2.2_1276_10000_0.7145_0.844_1.png
                gene_name: RBMS2
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
RBP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.455838e-02	ci left: 4.264501e-01	ci right 4.459871e-01	k: 4362	n:10000
Cons ci ratio: 7.808098e-02	ci left: 1.933804e-01	ci right 2.091940e-01	k: 2012	n:10000
KS ci ratio: 1.659180e-02	ci left: 8.409140e-01	ci right 8.550827e-01	k: 8481	n:10000
RBP2   10000 perm   1 sec   (7299 perm/sec)   p_kst 8.481000e-01   p_cons 2.012000e-01   p_joint 4.362000e-01

Outputting figure to mutsig2_images.part000000000144/RBP2.2_421_10000_0.8481_0.2012_0.4362.png
                gene_name: RBP2
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000144
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 144 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1723>
Subject: Job 8004485: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1723>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000145> was used as the working directory.
Started at Sun Nov 11 15:15:23 2012
Results reported at Sun Nov 11 15:20:44 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000145.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000145.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 145  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000145.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    319.45 sec.
    Max Memory :      4802 MB
    Max Swap   :      7090 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
145
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 145
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 145: processing genes 13029 - 13118
Calculating significance of each gene.
Using projection method.
13029	RBPMS2	1
13030	RBX1	2.373514e-01
13031	RC3H1	3.220898e-01
13032	RC3H2	9.623600e-01
13033	RCAN1	5.243670e-01
13034	RCAN2	1
13035	RCAN3	6.801153e-01
13036	RCBTB1	1.788915e-01
13037	RCBTB2	6.355327e-01
13038	RCC1	1
13039	RCC2	6.144719e-01
13040	RCCD1	1
13041	RCE1	4.921783e-01
13042	RCHY1	1
13043	RCL1	7.827052e-01
13044	RCN1	1
13045	RCN2	5.169760e-01
13046	RCN3	2.156824e-01
13047	RCOR1	4.273488e-01
13048	RCOR2	3.969775e-01
13049	RCOR3	4.649809e-01
13050	RCSD1	1
13051	RCVRN	4.324758e-01
13052	RD3	1
13053	RDBP	1
13054	RDH10	1.345049e-01
13055	RDH11	5.603134e-01
13056	RDH12	4.477782e-01
13057	RDH13	5.673219e-01
13058	RDH14	1
13059	RDH16	1
13060	RDH5	6.514970e-01
13061	RDH8	7.413559e-02
13062	RDM1	1
13063	RDX	5.816869e-01
13064	REC8	8.760515e-01
13065	RECK	8.790664e-01
13066	RECQL	8.587269e-01
13067	RECQL4	9.755155e-01
13068	RECQL5	5.506093e-01
13069	REEP1	6.462521e-01
13070	REEP2	3.016914e-01
13071	REEP3	1
13072	REEP4	1
13073	REEP5	5.453523e-01
13074	REEP6	1
13075	REG1A	1.745763e-05
13076	REG1B	1.915265e-09
13077	REG3A	1.095218e-05
13078	REG3G	1.155960e-06
13079	REG4	5.559141e-01
13080	REL	7.779611e-01
13081	RELA	6.118242e-01
13082	RELB	1
13083	RELL1	3.295056e-01
13084	RELL2	1.109720e-01
13085	RELN	1
13086	RELT	1
13087	REM1	4.211918e-01
13088	REM2	1
13089	REN	1
13090	RENBP	4.837678e-01
13091	REP15	6.151382e-01
13092	REPIN1	5.116012e-01
13093	REPS1	9.117615e-01
13094	REPS2	8.646970e-01
13095	RER1	1
13096	RERE	1
13097	RERG	2.318383e-01
13098	RERGL	1.732326e-01
13099	REST	1.489927e-01
13100	RET	7.977080e-01
13101	RETN	1
13102	RETNLB	5.569309e-02
13103	RETSAT	7.400034e-01
13104	REV1	6.906382e-01
13105	REV3L	1
13106	REXO1	9.514001e-01
13107	REXO2	1
13108	REXO4	6.396790e-01
13109	RFC1	9.733558e-01
13110	RFC2	1
13111	RFC3	1
13112	RFC4	2.340126e-02
13113	RFC5	5.937222e-01
13114	RFESD	1
13115	RFFL	1
13116	RFK	1
13117	RFNG	1
13118	RFPL1	5.328528e-01
Done

Running MutSig 2:
Scatter job 145: processing genes 13029 - 13118
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
RELN
Processing conservation and coverage...
93% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.095758e-01	ci left: 3.024949e-02	ci right 3.742541e-02	k: 337	n:10000
Cons ci ratio: 9.472752e-02	ci left: 1.392311e-01	ci right 1.531757e-01	k: 1461	n:10000
KS ci ratio: 1.272230e-01	ci left: 8.115862e-02	ci right 9.228352e-02	k: 866	n:10000
RELN   10000 perm   3 sec   (3276 perm/sec)   p_kst 8.660000e-02   p_cons 1.461000e-01   p_joint 3.370000e-02

Joint ci ratio: 1.145086e-01	ci left: 5.217214e-02	ci right 5.855790e-02	k: 1106	n:20000
Cons ci ratio: 6.626847e-02	ci left: 1.439433e-01	ci right 1.538590e-01	k: 2977	n:20000
KS ci ratio: 9.412430e-02	ci left: 7.603179e-02	ci right 8.359090e-02	k: 1595	n:20000
RELN   20000 perm   9 sec   (2326 perm/sec)   p_kst 7.975000e-02   p_cons 1.488500e-01   p_joint 5.530000e-02

Joint ci ratio: 9.162750e-02	ci left: 5.485939e-02	ci right 6.016004e-02	k: 1724	n:30000
Cons ci ratio: 5.459743e-02	ci left: 1.426152e-01	ci right 1.506534e-01	k: 4398	n:30000
KS ci ratio: 7.614633e-02	ci left: 7.806765e-02	ci right 8.428041e-02	k: 2434	n:30000
RELN   30000 perm   12 sec   (2467 perm/sec)   p_kst 8.113333e-02   p_cons 1.466000e-01   p_joint 5.746667e-02

Outputting figure to mutsig2_images.part000000000145/RELN.33_10643_30000_0.081133_0.1466_0.057467.png
                gene_name: RELN
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.081 
        ci_ks_bounds_left: 0.078 
       ci_ks_bounds_right: 0.084 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.057 
     ci_joint_bounds_left: 0.055 
    ci_joint_bounds_right: 0.060 

Current progress: 3 percent done.
REG3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.908765e-02	ci left: 1.549259e-01	ci right 1.694715e-01	k: 1621	n:10000
Cons ci ratio: 2.897138e-02	ci left: 6.372398e-01	ci right 6.560747e-01	k: 6467	n:10000
KS ci ratio: 1.265846e-01	ci left: 8.193541e-02	ci right 9.310624e-02	k: 874	n:10000
REG3A   10000 perm   2 sec   (6031 perm/sec)   p_kst 8.740000e-02   p_cons 6.467000e-01   p_joint 1.621000e-01

Joint ci ratio: 6.230899e-02	ci left: 1.600279e-01	ci right 1.703697e-01	k: 3303	n:20000
Cons ci ratio: 2.024302e-02	ci left: 6.455024e-01	ci right 6.587534e-01	k: 13043	n:20000
KS ci ratio: 8.942667e-02	ci left: 8.371703e-02	ci right 9.160333e-02	k: 1752	n:20000
REG3A   20000 perm   4 sec   (5442 perm/sec)   p_kst 8.760000e-02   p_cons 6.521500e-01   p_joint 1.651500e-01

Outputting figure to mutsig2_images.part000000000145/REG3A.13_548_20000_0.0876_0.65215_0.16515.png
                gene_name: REG3A
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.088 
        ci_ks_bounds_left: 0.084 
       ci_ks_bounds_right: 0.092 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 5 percent done.
REG1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.165621e-01	ci left: 9.564778e-02	ci right 1.075854e-01	k: 1015	n:10000
Cons ci ratio: 1.678782e-01	ci left: 4.734532e-02	ci right 5.611815e-02	k: 516	n:10000
KS ci ratio: 3.390452e-02	ci left: 5.622325e-01	ci right 5.817255e-01	k: 5720	n:10000
REG1A   10000 perm   2 sec   (6129 perm/sec)   p_kst 5.720000e-01   p_cons 5.160000e-02   p_joint 1.015000e-01

Joint ci ratio: 7.488375e-02	ci left: 1.159695e-01	ci right 1.250412e-01	k: 2409	n:20000
Cons ci ratio: 1.224394e-01	ci left: 4.575777e-02	ci right 5.177429e-02	k: 974	n:20000
KS ci ratio: 2.350633e-02	ci left: 5.747770e-01	ci right 5.884992e-01	k: 11633	n:20000
REG1A   20000 perm   4 sec   (5534 perm/sec)   p_kst 5.816500e-01   p_cons 4.870000e-02   p_joint 1.204500e-01

Joint ci ratio: 3.615151e-02	ci left: 2.764487e-01	ci right 2.866603e-01	k: 8446	n:30000
Cons ci ratio: 9.289111e-02	ci left: 5.342467e-02	ci right 5.866173e-02	k: 1680	n:30000
KS ci ratio: 1.890091e-02	ci left: 5.835076e-01	ci right 5.946752e-01	k: 17673	n:30000
REG1A   30000 perm   6 sec   (5297 perm/sec)   p_kst 5.891000e-01   p_cons 5.600000e-02   p_joint 2.815333e-01

Outputting figure to mutsig2_images.part000000000145/REG1A.12_521_30000_0.5891_0.056_0.28153.png
                gene_name: REG1A
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.056 
      ci_cons_bounds_left: 0.053 
     ci_cons_bounds_right: 0.059 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 8 percent done.
REG1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.849801e-02	ci left: 2.381767e-01	ci right 2.551711e-01	k: 2466	n:10000
Cons ci ratio: 1.106525e-01	ci left: 1.052972e-01	ci right 1.177301e-01	k: 1114	n:10000
KS ci ratio: 5.264337e-02	ci left: 3.472048e-01	ci right 3.660788e-01	k: 3566	n:10000
REG1B   10000 perm   2 sec   (6493 perm/sec)   p_kst 3.566000e-01   p_cons 1.114000e-01   p_joint 2.466000e-01

Joint ci ratio: 5.826487e-02	ci left: 1.791453e-01	ci right 1.899465e-01	k: 3690	n:20000
Cons ci ratio: 7.676089e-02	ci left: 1.109048e-01	ci right 1.198074e-01	k: 2306	n:20000
KS ci ratio: 3.919412e-02	ci left: 3.268163e-01	ci right 3.399322e-01	k: 6667	n:20000
REG1B   20000 perm   3 sec   (5843 perm/sec)   p_kst 3.333500e-01   p_cons 1.153000e-01   p_joint 1.845000e-01

Outputting figure to mutsig2_images.part000000000145/REG1B.11_521_20000_0.33335_0.1153_0.1845.png
                gene_name: REG1B
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 11 percent done.
REG3G
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.960179e-02	ci left: 6.272853e-01	ci right 6.462349e-01	k: 6368	n:10000
Cons ci ratio: 4.622758e-02	ci left: 4.085072e-01	ci right 4.279405e-01	k: 4182	n:10000
KS ci ratio: 4.178768e-02	ci left: 4.581808e-01	ci right 4.778379e-01	k: 4680	n:10000
REG3G   10000 perm   2 sec   (6256 perm/sec)   p_kst 4.680000e-01   p_cons 4.182000e-01   p_joint 6.368000e-01

Outputting figure to mutsig2_images.part000000000145/REG3G.8_548_10000_0.468_0.4182_0.6368.png
                gene_name: REG3G
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 13 percent done.
REST
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.138278e-02	ci left: 3.583386e-01	ci right 3.773385e-01	k: 3678	n:10000
Cons ci ratio: 3.129460e-02	ci left: 6.010623e-01	ci right 6.202732e-01	k: 6107	n:10000
KS ci ratio: 7.415534e-02	ci left: 2.102365e-01	ci right 2.265279e-01	k: 2183	n:10000
REST   10000 perm   2 sec   (5359 perm/sec)   p_kst 2.183000e-01   p_cons 6.107000e-01   p_joint 3.678000e-01

Outputting figure to mutsig2_images.part000000000145/REST.8_3306_10000_0.2183_0.6107_0.3678.png
                gene_name: REST
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 16 percent done.
RC3H1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.020829e-01	ci left: 1.219021e-01	ci right 1.351151e-01	k: 1284	n:10000
Cons ci ratio: 3.938760e-03	ci left: 9.879601e-01	ci right 9.919467e-01	k: 9901	n:10000
KS ci ratio: 2.005397e-01	ci left: 3.310027e-02	ci right 4.057267e-02	k: 367	n:10000
RC3H1   10000 perm   2 sec   (5659 perm/sec)   p_kst 3.670000e-02   p_cons 9.901000e-01   p_joint 1.284000e-01

Joint ci ratio: 7.504316e-02	ci left: 1.155268e-01	ci right 1.245840e-01	k: 2400	n:20000
Cons ci ratio: 2.618898e-03	ci left: 9.898067e-01	ci right 9.924476e-01	k: 19824	n:20000
KS ci ratio: 1.431237e-01	ci left: 3.355738e-02	ci right 3.877859e-02	k: 722	n:20000
RC3H1   20000 perm   4 sec   (5105 perm/sec)   p_kst 3.610000e-02   p_cons 9.912000e-01   p_joint 1.200000e-01

Joint ci ratio: 7.299425e-02	ci left: 8.448980e-02	ci right 9.092363e-02	k: 2630	n:30000
Cons ci ratio: 2.239709e-03	ci left: 9.891607e-01	ci right 9.914095e-01	k: 29710	n:30000
KS ci ratio: 1.163333e-01	ci left: 3.434145e-02	ci right 3.861558e-02	k: 1093	n:30000
RC3H1   30000 perm   6 sec   (4892 perm/sec)   p_kst 3.643333e-02   p_cons 9.903333e-01   p_joint 8.766667e-02

Joint ci ratio: 7.445882e-02	ci left: 6.238214e-02	ci right 6.723127e-02	k: 2591	n:40000
Cons ci ratio: 1.914285e-03	ci left: 9.895791e-01	ci right 9.914986e-01	k: 39623	n:40000
KS ci ratio: 1.014966e-01	ci left: 3.412248e-02	ci right 3.779529e-02	k: 1437	n:40000
RC3H1   40000 perm   8 sec   (4757 perm/sec)   p_kst 3.592500e-02   p_cons 9.905750e-01   p_joint 6.477500e-02

Joint ci ratio: 6.579826e-02	ci left: 6.409500e-02	ci right 6.847552e-02	k: 3313	n:50000
Cons ci ratio: 1.736734e-03	ci left: 9.894018e-01	ci right 9.911405e-01	k: 49515	n:50000
KS ci ratio: 8.695190e-02	ci left: 3.735907e-02	ci right 4.077471e-02	k: 1952	n:50000
RC3H1   50000 perm   11 sec   (4654 perm/sec)   p_kst 3.904000e-02   p_cons 9.903000e-01   p_joint 6.626000e-02

Outputting figure to mutsig2_images.part000000000145/RC3H1.7_3478_50000_0.03904_0.9903_0.06626.png
                gene_name: RC3H1
               theta_stop: 0.087 
                    nperm: 50000 
                     p_ks: 0.039 
        ci_ks_bounds_left: 0.037 
       ci_ks_bounds_right: 0.041 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.066 
     ci_joint_bounds_left: 0.064 
    ci_joint_bounds_right: 0.068 

Current progress: 18 percent done.
REV1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.071047e-02	ci left: 9.254425e-01	ci right 9.355050e-01	k: 9306	n:10000
KS ci ratio: 1.227189e-02	ci left: 9.050431e-01	ci right 9.163163e-01	k: 9108	n:10000
REV1   10000 perm   2 sec   (5296 perm/sec)   p_kst 9.108000e-01   p_cons 9.306000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000145/REV1.5_3844_10000_0.9108_0.9306_1.png
                gene_name: REV1
               theta_stop: 0.012 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 21 percent done.
RFC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.496175e-02	ci left: 5.470984e-01	ci right 5.666684e-01	k: 5569	n:10000
KS ci ratio: 1.938620e-02	ci left: 7.955742e-01	ci right 8.112487e-01	k: 8035	n:10000
RFC4   10000 perm   2 sec   (5367 perm/sec)   p_kst 8.035000e-01   p_cons 5.569000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000145/RFC4.5_1132_10000_0.8035_0.5569_1.png
                gene_name: RFC4
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 24 percent done.
RCBTB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.111722e-02	ci left: 6.037736e-01	ci right 6.229603e-01	k: 6134	n:10000
KS ci ratio: 2.288515e-02	ci left: 7.371453e-01	ci right 7.543113e-01	k: 7458	n:10000
RCBTB1   10000 perm   2 sec   (6350 perm/sec)   p_kst 7.458000e-01   p_cons 6.134000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000145/RCBTB1.4_1640_10000_0.7458_0.6134_1.png
                gene_name: RCBTB1
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 26 percent done.
RDH8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.439508e-02	ci left: 2.091515e-01	ci right 2.254135e-01	k: 2172	n:10000
Cons ci ratio: 1.097680e-01	ci left: 1.068582e-01	ci right 1.193681e-01	k: 1130	n:10000
KS ci ratio: 7.764659e-02	ci left: 1.951537e-01	ci right 2.110196e-01	k: 2030	n:10000
RDH8   10000 perm   1 sec   (7065 perm/sec)   p_kst 2.030000e-01   p_cons 1.130000e-01   p_joint 2.172000e-01

Joint ci ratio: 6.686310e-02	ci left: 1.417246e-01	ci right 1.515784e-01	k: 2932	n:20000
Cons ci ratio: 7.651740e-02	ci left: 1.115439e-01	ci right 1.204681e-01	k: 2319	n:20000
KS ci ratio: 5.545381e-02	ci left: 1.943269e-01	ci right 2.054605e-01	k: 3997	n:20000
RDH8   20000 perm   3 sec   (6282 perm/sec)   p_kst 1.998500e-01   p_cons 1.159500e-01   p_joint 1.466000e-01

Outputting figure to mutsig2_images.part000000000145/RDH8.4_960_20000_0.19985_0.11595_0.1466.png
                gene_name: RDH8
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 29 percent done.
RECQL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.028398e-01	ci left: 3.233938e-02	ci right 3.973408e-02	k: 359	n:10000
Cons ci ratio: 1.422220e-01	ci left: 6.555836e-02	ci right 7.569349e-02	k: 705	n:10000
KS ci ratio: 1.244911e-01	ci left: 8.455810e-02	ci right 9.588194e-02	k: 901	n:10000
RECQL5   10000 perm   2 sec   (6292 perm/sec)   p_kst 9.010000e-02   p_cons 7.050000e-02   p_joint 3.590000e-02

Joint ci ratio: 1.253735e-01	ci left: 4.367138e-02	ci right 4.956134e-02	k: 931	n:20000
Cons ci ratio: 9.914022e-02	ci left: 6.889464e-02	ci right 7.613023e-02	k: 1449	n:20000
KS ci ratio: 8.870753e-02	ci left: 8.499069e-02	ci right 9.292928e-02	k: 1778	n:20000
RECQL5   20000 perm   4 sec   (5598 perm/sec)   p_kst 8.890000e-02   p_cons 7.245000e-02   p_joint 4.655000e-02

Joint ci ratio: 6.011669e-02	ci left: 1.203891e-01	ci right 1.278839e-01	k: 3723	n:30000
Cons ci ratio: 8.423012e-02	ci left: 6.449025e-02	ci right 7.019389e-02	k: 2019	n:30000
KS ci ratio: 7.320795e-02	ci left: 8.403090e-02	ci right 9.044930e-02	k: 2616	n:30000
RECQL5   30000 perm   6 sec   (5284 perm/sec)   p_kst 8.720000e-02   p_cons 6.730000e-02   p_joint 1.241000e-01

Outputting figure to mutsig2_images.part000000000145/RECQL5.4_3139_30000_0.0872_0.0673_0.1241.png
                gene_name: RECQL5
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.087 
        ci_ks_bounds_left: 0.084 
       ci_ks_bounds_right: 0.090 
                   p_cons: 0.067 
      ci_cons_bounds_left: 0.064 
     ci_cons_bounds_right: 0.070 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 32 percent done.
REM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.860469e-02	ci left: 6.430738e-01	ci right 6.618374e-01	k: 6525	n:10000
Cons ci ratio: 2.253522e-02	ci left: 7.430088e-01	ci right 7.600445e-01	k: 7516	n:10000
KS ci ratio: 4.270515e-02	ci left: 4.473998e-01	ci right 4.670251e-01	k: 4572	n:10000
REM1   10000 perm   1 sec   (6914 perm/sec)   p_kst 4.572000e-01   p_cons 7.516000e-01   p_joint 6.525000e-01

Outputting figure to mutsig2_images.part000000000145/REM1.4_913_10000_0.4572_0.7516_0.6525.png
                gene_name: REM1
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 34 percent done.
REV3L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.512495e-02	ci left: 5.447941e-01	ci right 5.643741e-01	k: 5546	n:10000
KS ci ratio: 1.427922e-02	ci left: 8.764362e-01	ci right 8.891399e-01	k: 8829	n:10000
REV3L   10000 perm   2 sec   (4173 perm/sec)   p_kst 8.829000e-01   p_cons 5.546000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000145/REV3L.4_9521_10000_0.8829_0.5546_1.png
                gene_name: REV3L
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 37 percent done.
RCOR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.519941e-02	ci left: 2.567652e-01	ci right 2.741716e-01	k: 2654	n:10000
Cons ci ratio: 6.589183e-02	ci left: 2.527095e-01	ci right 2.700297e-01	k: 2613	n:10000
KS ci ratio: 7.142066e-02	ci left: 2.231634e-01	ci right 2.397933e-01	k: 2314	n:10000
RCOR1   10000 perm   2 sec   (6626 perm/sec)   p_kst 2.314000e-01   p_cons 2.613000e-01   p_joint 2.654000e-01

Outputting figure to mutsig2_images.part000000000145/RCOR1.3_1497_10000_0.2314_0.2613_0.2654.png
                gene_name: RCOR1
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 39 percent done.
RECK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.417193e-02	ci left: 7.156290e-01	ci right 7.332401e-01	k: 7245	n:10000
Cons ci ratio: 4.690855e-02	ci left: 4.014334e-01	ci right 4.208184e-01	k: 4111	n:10000
KS ci ratio: 3.528161e-02	ci left: 5.425901e-01	ci right 5.621794e-01	k: 5524	n:10000
RECK   10000 perm   2 sec   (6320 perm/sec)   p_kst 5.524000e-01   p_cons 4.111000e-01   p_joint 7.245000e-01

Outputting figure to mutsig2_images.part000000000145/RECK.3_3000_10000_0.5524_0.4111_0.7245.png
                gene_name: RECK
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 42 percent done.
RECQL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.745527e-02	ci left: 3.958555e-01	ci right 4.151996e-01	k: 4055	n:10000
Cons ci ratio: 8.811689e-02	ci left: 1.578715e-01	ci right 1.725241e-01	k: 1651	n:10000
KS ci ratio: 2.712419e-02	ci left: 6.669285e-01	ci right 6.853688e-01	k: 6762	n:10000
RECQL4   10000 perm   2 sec   (6278 perm/sec)   p_kst 6.762000e-01   p_cons 1.651000e-01   p_joint 4.055000e-01

Outputting figure to mutsig2_images.part000000000145/RECQL4.3_3712_10000_0.6762_0.1651_0.4055.png
                gene_name: RECQL4
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 45 percent done.
RELA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.286102e-02	ci left: 7.375496e-01	ci right 7.547068e-01	k: 7462	n:10000
KS ci ratio: 1.768563e-02	ci left: 8.234072e-01	ci right 8.381996e-01	k: 8309	n:10000
RELA   10000 perm   1 sec   (6683 perm/sec)   p_kst 8.309000e-01   p_cons 7.462000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000145/RELA.3_1700_10000_0.8309_0.7462_1.png
                gene_name: RELA
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 47 percent done.
RELL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.489961e-02	ci left: 7.035183e-01	ci right 7.213578e-01	k: 7125	n:10000
Cons ci ratio: 8.195533e-03	ci left: 9.540918e-01	ci right 9.620385e-01	k: 9582	n:10000
KS ci ratio: 4.063115e-02	ci left: 4.721630e-01	ci right 4.918475e-01	k: 4820	n:10000
RELL2   10000 perm   1 sec   (7204 perm/sec)   p_kst 4.820000e-01   p_cons 9.582000e-01   p_joint 7.125000e-01

Outputting figure to mutsig2_images.part000000000145/RELL2.3_936_10000_0.482_0.9582_0.7125.png
                gene_name: RELL2
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 50 percent done.
RERE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.347064e-02	ci left: 7.273436e-01	ci right 7.447187e-01	k: 7361	n:10000
Cons ci ratio: 1.485455e-01	ci left: 6.024541e-02	ci right 7.000980e-02	k: 650	n:10000
KS ci ratio: 1.257135e-02	ci left: 9.009330e-01	ci right 9.124288e-01	k: 9068	n:10000
RERE   10000 perm   2 sec   (5670 perm/sec)   p_kst 9.068000e-01   p_cons 6.500000e-02   p_joint 7.361000e-01

Joint ci ratio: 1.317156e-02	ci left: 8.103568e-01	ci right 8.211512e-01	k: 16316	n:20000
Cons ci ratio: 1.042709e-01	ci left: 6.254854e-02	ci right 6.947828e-02	k: 1319	n:20000
KS ci ratio: 8.961208e-03	ci left: 9.012598e-01	ci right 9.094219e-01	k: 18108	n:20000
RERE   20000 perm   4 sec   (5085 perm/sec)   p_kst 9.054000e-01   p_cons 6.595000e-02   p_joint 8.158000e-01

Joint ci ratio: 2.088337e-02	ci left: 5.344400e-01	ci right 5.457523e-01	k: 16203	n:30000
Cons ci ratio: 8.493098e-02	ci left: 6.347731e-02	ci right 6.914037e-02	k: 1988	n:30000
KS ci ratio: 7.313555e-03	ci left: 9.020999e-01	ci right 9.087546e-01	k: 27164	n:30000
RERE   30000 perm   6 sec   (4880 perm/sec)   p_kst 9.054667e-01   p_cons 6.626667e-02   p_joint 5.401000e-01

Outputting figure to mutsig2_images.part000000000145/RERE.3_4789_30000_0.90547_0.066267_0.5401.png
                gene_name: RERE
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.066 
      ci_cons_bounds_left: 0.063 
     ci_cons_bounds_right: 0.069 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 53 percent done.
RERGL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.992472e-02	ci left: 7.866480e-01	ci right 8.025800e-01	k: 7947	n:10000
KS ci ratio: 1.904187e-02	ci left: 8.012576e-01	ci right 8.167620e-01	k: 8091	n:10000
RERGL   10000 perm   1 sec   (7939 perm/sec)   p_kst 8.091000e-01   p_cons 7.947000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000145/RERGL.3_638_10000_0.8091_0.7947_1.png
                gene_name: RERGL
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 55 percent done.
RET
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.067232e-02	ci left: 3.648027e-01	ci right 3.838706e-01	k: 3743	n:10000
Cons ci ratio: 1.768563e-02	ci left: 8.234072e-01	ci right 8.381996e-01	k: 8309	n:10000
KS ci ratio: 1.135979e-01	ci left: 1.003243e-01	ci right 1.125061e-01	k: 1063	n:10000
RET   10000 perm   2 sec   (6145 perm/sec)   p_kst 1.063000e-01   p_cons 8.309000e-01   p_joint 3.743000e-01

Joint ci ratio: 7.631289e-02	ci left: 1.120847e-01	ci right 1.210271e-01	k: 2330	n:20000
Cons ci ratio: 1.257177e-02	ci left: 8.241140e-01	ci right 8.345900e-01	k: 16588	n:20000
KS ci ratio: 8.197512e-02	ci left: 9.837857e-02	ci right 1.068374e-01	k: 2051	n:20000
RET   20000 perm   4 sec   (5502 perm/sec)   p_kst 1.025500e-01   p_cons 8.294000e-01   p_joint 1.165000e-01

Outputting figure to mutsig2_images.part000000000145/RET.3_3457_20000_0.10255_0.8294_0.1165.png
                gene_name: RET
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.098 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 58 percent done.
RC3H2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.391782e-02	ci left: 7.198696e-01	ci right 7.373970e-01	k: 7287	n:10000
KS ci ratio: 6.184739e-03	ci left: 9.725959e-01	ci right 9.787227e-01	k: 9758	n:10000
RC3H2   10000 perm   2 sec   (6132 perm/sec)   p_kst 9.758000e-01   p_cons 7.287000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000145/RC3H2.2_3734_10000_0.9758_0.7287_1.png
                gene_name: RC3H2
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 61 percent done.
RCBTB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.366475e-02	ci left: 8.854448e-01	ci right 8.977261e-01	k: 8917	n:10000
KS ci ratio: 1.968641e-02	ci left: 7.906032e-01	ci right 8.064225e-01	k: 7986	n:10000
RCBTB2   10000 perm   1 sec   (7336 perm/sec)   p_kst 7.986000e-01   p_cons 8.917000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000145/RCBTB2.2_1704_10000_0.7986_0.8917_1.png
                gene_name: RCBTB2
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 63 percent done.
RCC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.949587e-02	ci left: 2.936048e-01	ci right 3.117103e-01	k: 3026	n:10000
Cons ci ratio: 1.138375e-01	ci left: 9.993440e-02	ci right 1.120962e-01	k: 1059	n:10000
KS ci ratio: 8.394965e-02	ci left: 1.714324e-01	ci right 1.865551e-01	k: 1789	n:10000
RCC2   10000 perm   1 sec   (7391 perm/sec)   p_kst 1.789000e-01   p_cons 1.059000e-01   p_joint 3.026000e-01

Joint ci ratio: 4.123312e-02	ci left: 3.047863e-01	ci right 3.176686e-01	k: 6224	n:20000
Cons ci ratio: 7.965873e-02	ci left: 1.036815e-01	ci right 1.123328e-01	k: 2159	n:20000
KS ci ratio: 5.928154e-02	ci left: 1.740549e-01	ci right 1.847384e-01	k: 3587	n:20000
RCC2   20000 perm   3 sec   (6508 perm/sec)   p_kst 1.793500e-01   p_cons 1.079500e-01   p_joint 3.112000e-01

Outputting figure to mutsig2_images.part000000000145/RCC2.2_1617_20000_0.17935_0.10795_0.3112.png
                gene_name: RCC2
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 66 percent done.
RCN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.382108e-02	ci left: 7.214854e-01	ci right 7.389803e-01	k: 7303	n:10000
KS ci ratio: 4.447696e-02	ci left: 4.273475e-01	ci right 4.468891e-01	k: 4371	n:10000
RCN1   10000 perm   1 sec   (7741 perm/sec)   p_kst 4.371000e-01   p_cons 7.303000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000145/RCN1.2_1020_10000_0.4371_0.7303_1.png
                gene_name: RCN1
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
RCN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.550376e-02	ci left: 3.234649e-01	ci right 3.420327e-01	k: 3327	n:10000
KS ci ratio: 1.975368e-02	ci left: 7.894875e-01	ci right 8.053389e-01	k: 7975	n:10000
RCN3   10000 perm   1 sec   (7198 perm/sec)   p_kst 7.975000e-01   p_cons 3.327000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000145/RCN3.2_1011_10000_0.7975_0.3327_1.png
                gene_name: RCN3
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
RCOR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.419492e-02	ci left: 2.628009e-01	ci right 2.803323e-01	k: 2715	n:10000
Cons ci ratio: 7.102156e-02	ci left: 2.251380e-01	ci right 2.418175e-01	k: 2334	n:10000
KS ci ratio: 7.582348e-02	ci left: 2.028409e-01	ci right 2.189279e-01	k: 2108	n:10000
RCOR2   10000 perm   1 sec   (7099 perm/sec)   p_kst 2.108000e-01   p_cons 2.334000e-01   p_joint 2.715000e-01

Outputting figure to mutsig2_images.part000000000145/RCOR2.2_1620_10000_0.2108_0.2334_0.2715.png
                gene_name: RCOR2
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 74 percent done.
RCOR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.884472e-02	ci left: 6.392513e-01	ci right 6.580620e-01	k: 6487	n:10000
Cons ci ratio: 5.654465e-02	ci left: 3.153259e-01	ci right 3.337764e-01	k: 3245	n:10000
KS ci ratio: 5.422880e-02	ci left: 3.337920e-01	ci right 3.524995e-01	k: 3431	n:10000
RCOR3   10000 perm   1 sec   (7010 perm/sec)   p_kst 3.431000e-01   p_cons 3.245000e-01   p_joint 6.487000e-01

Outputting figure to mutsig2_images.part000000000145/RCOR3.2_1743_10000_0.3431_0.3245_0.6487.png
                gene_name: RCOR3
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 76 percent done.
RDH10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.249072e-02	ci left: 4.498950e-01	ci right 4.695285e-01	k: 4597	n:10000
Cons ci ratio: 2.610159e-02	ci left: 6.836528e-01	ci right 7.018348e-01	k: 6928	n:10000
KS ci ratio: 1.712220e-01	ci left: 4.552219e-02	ci right 5.414247e-02	k: 497	n:10000
RDH10   10000 perm   1 sec   (7351 perm/sec)   p_kst 4.970000e-02   p_cons 6.928000e-01   p_joint 4.597000e-01

Joint ci ratio: 2.945599e-02	ci left: 4.626631e-01	ci right 4.765457e-01	k: 9392	n:20000
Cons ci ratio: 1.839432e-02	ci left: 6.878119e-01	ci right 7.006316e-01	k: 13885	n:20000
KS ci ratio: 1.200634e-01	ci left: 4.755432e-02	ci right 5.367717e-02	k: 1011	n:20000
RDH10   20000 perm   3 sec   (6477 perm/sec)   p_kst 5.055000e-02   p_cons 6.942500e-01   p_joint 4.696000e-01

Joint ci ratio: 7.024815e-02	ci left: 9.072047e-02	ci right 9.735839e-02	k: 2820	n:30000
Cons ci ratio: 1.504322e-02	ci left: 6.883147e-01	ci right 6.987811e-01	k: 20807	n:30000
KS ci ratio: 9.755917e-02	ci left: 4.857001e-02	ci right 5.358405e-02	k: 1531	n:30000
RDH10   30000 perm   5 sec   (6165 perm/sec)   p_kst 5.103333e-02   p_cons 6.935667e-01   p_joint 9.400000e-02

Outputting figure to mutsig2_images.part000000000145/RDH10.2_1050_30000_0.051033_0.69357_0.094.png
                gene_name: RDH10
               theta_stop: 0.098 
                    nperm: 30000 
                     p_ks: 0.051 
        ci_ks_bounds_left: 0.049 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.094 
     ci_joint_bounds_left: 0.091 
    ci_joint_bounds_right: 0.097 

Current progress: 79 percent done.
RDH12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.868830e-03	ci left: 9.823135e-01	ci right 9.871982e-01	k: 9849	n:10000
KS ci ratio: 6.453735e-02	ci left: 2.607228e-01	ci right 2.782117e-01	k: 2694	n:10000
RDH12   10000 perm   1 sec   (7496 perm/sec)   p_kst 2.694000e-01   p_cons 9.849000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000145/RDH12.2_979_10000_0.2694_0.9849_1.png
                gene_name: RDH12
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
RDX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.342460e-02	ci left: 2.135905e-01	ci right 2.299719e-01	k: 2217	n:10000
KS ci ratio: 3.836432e-02	ci left: 5.008505e-01	ci right 5.205433e-01	k: 5107	n:10000
RDX   10000 perm   1 sec   (6967 perm/sec)   p_kst 5.107000e-01   p_cons 2.217000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000145/RDX.2_1804_10000_0.5107_0.2217_1.png
                gene_name: RDX
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
REEP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.170407e-02	ci left: 5.948373e-01	ci right 6.141018e-01	k: 6045	n:10000
KS ci ratio: 3.031594e-02	ci left: 6.161294e-01	ci right 6.351973e-01	k: 6257	n:10000
REEP2   10000 perm   1 sec   (7864 perm/sec)   p_kst 6.257000e-01   p_cons 6.045000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000145/REEP2.2_791_10000_0.6257_0.6045_1.png
                gene_name: REEP2
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
RENBP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.806084e-02	ci left: 3.897810e-01	ci right 4.090776e-01	k: 3994	n:10000
Cons ci ratio: 6.425987e-02	ci left: 2.624051e-01	ci right 2.799284e-01	k: 2711	n:10000
KS ci ratio: 2.025385e-02	ci left: 7.811735e-01	ci right 7.972577e-01	k: 7893	n:10000
RENBP   10000 perm   1 sec   (7499 perm/sec)   p_kst 7.893000e-01   p_cons 2.711000e-01   p_joint 3.994000e-01

Outputting figure to mutsig2_images.part000000000145/RENBP.2_1328_10000_0.7893_0.2711_0.3994.png
                gene_name: RENBP
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 89 percent done.
REPIN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.847959e-02	ci left: 2.382755e-01	ci right 2.552722e-01	k: 2467	n:10000
Cons ci ratio: 7.457047e-02	ci left: 2.083625e-01	ci right 2.246029e-01	k: 2164	n:10000
KS ci ratio: 3.736371e-02	ci left: 5.140556e-01	ci right 5.337305e-01	k: 5239	n:10000
REPIN1   10000 perm   1 sec   (6980 perm/sec)   p_kst 5.239000e-01   p_cons 2.164000e-01   p_joint 2.467000e-01

Outputting figure to mutsig2_images.part000000000145/REPIN1.2_1883_10000_0.5239_0.2164_0.2467.png
                gene_name: REPIN1
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 92 percent done.
RERG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.321714e-02	ci left: 5.722601e-01	ci right 5.916921e-01	k: 5820	n:10000
Cons ci ratio: 1.391704e-01	ci left: 6.836336e-02	ci right 7.868673e-02	k: 734	n:10000
KS ci ratio: 3.453175e-02	ci left: 5.532111e-01	ci right 5.727522e-01	k: 5630	n:10000
RERG   10000 perm   1 sec   (7625 perm/sec)   p_kst 5.630000e-01   p_cons 7.340000e-02   p_joint 5.820000e-01

Joint ci ratio: 1.512997e-02	ci left: 7.645576e-01	ci right 7.762637e-01	k: 15409	n:20000
Cons ci ratio: 9.596603e-02	ci left: 7.329309e-02	ci right 8.073044e-02	k: 1539	n:20000
KS ci ratio: 2.435471e-02	ci left: 5.573941e-01	ci right 5.711872e-01	k: 11286	n:20000
RERG   20000 perm   3 sec   (6727 perm/sec)   p_kst 5.643000e-01   p_cons 7.695000e-02   p_joint 7.704500e-01

Outputting figure to mutsig2_images.part000000000145/RERG.2_616_20000_0.5643_0.07695_0.77045.png
                gene_name: RERG
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.077 
      ci_cons_bounds_left: 0.073 
     ci_cons_bounds_right: 0.081 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 95 percent done.
RETNLB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.998574e-02	ci left: 7.856340e-01	ci right 8.015946e-01	k: 7937	n:10000
KS ci ratio: 3.557503e-02	ci left: 5.384831e-01	ci right 5.580887e-01	k: 5483	n:10000
RETNLB   10000 perm   1 sec   (7852 perm/sec)   p_kst 5.483000e-01   p_cons 7.937000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000145/RETNLB.2_348_10000_0.5483_0.7937_1.png
                gene_name: RETNLB
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
RETSAT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.025127e-02	ci left: 6.171342e-01	ci right 6.361919e-01	k: 6267	n:10000
KS ci ratio: 6.344096e-02	ci left: 2.674529e-01	ci right 2.850777e-01	k: 2762	n:10000
RETSAT   10000 perm   1 sec   (7194 perm/sec)   p_kst 2.762000e-01   p_cons 6.267000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000145/RETSAT.2_1877_10000_0.2762_0.6267_1.png
                gene_name: RETSAT
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000145
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 145 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1726>
Subject: Job 8004493: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1726>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000146> was used as the working directory.
Started at Sun Nov 11 15:15:23 2012
Results reported at Sun Nov 11 15:22:04 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000146.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000146.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 146  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000146.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    390.61 sec.
    Max Memory :      4740 MB
    Max Swap   :      7106 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
146
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 146
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 146: processing genes 13119 - 13209
Calculating significance of each gene.
Using projection method.
13119	RFPL2	6.132560e-01
13120	RFPL3	5.707347e-02
13121	RFPL4B	1
13122	RFT1	1
13123	RFTN1	7.976463e-01
13124	RFTN2	2.341304e-01
13125	RFWD2	8.317565e-01
13126	RFWD3	3.578503e-01
13127	RFX1	9.300070e-01
13128	RFX2	7.763694e-01
13129	RFX3	1
13130	RFX4	1
13131	RFX5	1
13132	RFX6	9.420520e-01
13133	RFX7	9.937058e-01
13134	RFXANK	1
13135	RFXAP	1
13136	RG9MTD1	9.322647e-02
13137	RG9MTD2	1
13138	RG9MTD3	1
13139	RGAG1	6.521884e-03
13140	RGAG4	5.197188e-01
13141	RGL1	1.071915e-01
13142	RGL2	4.288590e-01
13143	RGL3	1
13144	RGL4	5.503661e-01
13145	RGMA	6.325442e-01
13146	RGMB	6.396161e-01
13147	RGN	1
13148	RGNEF	9.525921e-01
13149	RGP1	7.627499e-01
13150	RGPD3	1
13151	RGPD4	1
13152	RGPD8	1
13153	RGR	5.114345e-01
13154	RGS1	6.637907e-02
13155	RGS10	4.996856e-01
13156	RGS11	6.099070e-01
13157	RGS12	4.505749e-01
13158	RGS13	9.235184e-03
13159	RGS14	1
13160	RGS16	4.947974e-01
13161	RGS17	2.440800e-01
13162	RGS18	4.463090e-01
13163	RGS19	3.758242e-01
13164	RGS2	1
13165	RGS20	5.332398e-01
13166	RGS21	1.091661e-01
13167	RGS22	8.758553e-01
13168	RGS3	7.297993e-01
13169	RGS4	1
13170	RGS5	7.296950e-02
13171	RGS6	5.121254e-02
13172	RGS7	7.734636e-01
13173	RGS7BP	1
13174	RGS8	2.766372e-01
13175	RGS9	8.646428e-01
13176	RHAG	2.192304e-03
13177	RHBDD1	3.279112e-01
13178	RHBDD2	7.931606e-01
13179	RHBDD3	3.876833e-01
13180	RHBDF1	1
13181	RHBDF2	9.128324e-01
13182	RHBDL1	1
13183	RHBDL2	3.952274e-01
13184	RHBDL3	4.191909e-01
13185	RHBG	1
13186	RHCE	8.059249e-01
13187	RHCG	6.672050e-01
13188	RHD	7.109602e-01
13189	RHEB	1
13190	RHEBL1	2.986947e-01
13191	RHO	7.702578e-01
13192	RHOA	1
13193	RHOB	1
13194	RHOBTB1	3.718531e-01
13195	RHOBTB2	6.442135e-01
13196	RHOBTB3	8.198824e-01
13197	RHOC	1.344493e-01
13198	RHOD	1
13199	RHOF	1
13200	RHOG	1
13201	RHOH	1.632857e-02
13202	RHOJ	7.187848e-02
13203	RHOQ	1
13204	RHOT1	1
13205	RHOT2	8.835326e-01
13206	RHOU	1.999706e-02
13207	RHOV	1
13208	RHOXF1	4.670144e-01
13209	RHPN1	5.536800e-01
Done

Running MutSig 2:
Scatter job 146: processing genes 13119 - 13209
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
RGAG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.500300e-01	ci left: 5.908749e-02	ci right 6.876845e-02	k: 638	n:10000
Cons ci ratio: 3.317620e-02	ci left: 5.728619e-01	ci right 5.922899e-01	k: 5826	n:10000
KS ci ratio: 2.326663e-01	ci left: 2.438298e-02	ci right 3.089610e-02	k: 275	n:10000
RGAG1   10000 perm   2 sec   (4522 perm/sec)   p_kst 2.750000e-02   p_cons 5.826000e-01   p_joint 6.380000e-02

Joint ci ratio: 1.182289e-01	ci left: 4.901182e-02	ci right 5.521921e-02	k: 1041	n:20000
Cons ci ratio: 2.376081e-02	ci left: 5.695162e-01	ci right 5.832616e-01	k: 11528	n:20000
KS ci ratio: 1.584294e-01	ci left: 2.734281e-02	ci right 3.209522e-02	k: 593	n:20000
RGAG1   20000 perm   7 sec   (2850 perm/sec)   p_kst 2.965000e-02   p_cons 5.764000e-01   p_joint 5.205000e-02

Joint ci ratio: 9.779484e-02	ci left: 4.834209e-02	ci right 5.334535e-02	k: 1524	n:30000
Cons ci ratio: 1.850149e-02	ci left: 5.938289e-01	ci right 6.049518e-01	k: 17982	n:30000
KS ci ratio: 1.301886e-01	ci left: 2.742065e-02	ci right 3.127122e-02	k: 879	n:30000
RGAG1   30000 perm   10 sec   (3118 perm/sec)   p_kst 2.930000e-02   p_cons 5.994000e-01   p_joint 5.080000e-02

Joint ci ratio: 7.792418e-02	ci left: 5.717677e-02	ci right 6.183743e-02	k: 2379	n:40000
Cons ci ratio: 1.597624e-02	ci left: 5.959810e-01	ci right 6.056043e-01	k: 24032	n:40000
KS ci ratio: 1.147959e-01	ci left: 2.669672e-02	ci right 2.997223e-02	k: 1132	n:40000
RGAG1   40000 perm   12 sec   (3271 perm/sec)   p_kst 2.830000e-02   p_cons 6.008000e-01   p_joint 5.947500e-02

Joint ci ratio: 7.125128e-02	ci left: 5.504260e-02	ci right 5.912901e-02	k: 2853	n:50000
Cons ci ratio: 1.419928e-02	ci left: 5.995370e-01	ci right 6.081309e-01	k: 30192	n:50000
KS ci ratio: 1.034786e-01	ci left: 2.645445e-02	ci right 2.936071e-02	k: 1394	n:50000
RGAG1   50000 perm   15 sec   (3352 perm/sec)   p_kst 2.788000e-02   p_cons 6.038400e-01   p_joint 5.706000e-02

Joint ci ratio: 6.502118e-02	ci left: 5.525650e-02	ci right 5.898648e-02	k: 3426	n:60000
Cons ci ratio: 1.296324e-02	ci left: 5.998731e-01	ci right 6.077168e-01	k: 36228	n:60000
KS ci ratio: 9.349052e-02	ci left: 2.713422e-02	ci right 2.981165e-02	k: 1707	n:60000
RGAG1   60000 perm   18 sec   (3383 perm/sec)   p_kst 2.845000e-02   p_cons 6.038000e-01   p_joint 5.710000e-02

Outputting figure to mutsig2_images.part000000000146/RGAG1.14_4175_60000_0.02845_0.6038_0.0571.png
                gene_name: RGAG1
               theta_stop: 0.093 
                    nperm: 60000 
                     p_ks: 0.028 
        ci_ks_bounds_left: 0.027 
       ci_ks_bounds_right: 0.030 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.057 
     ci_joint_bounds_left: 0.055 
    ci_joint_bounds_right: 0.059 

Current progress: 2 percent done.
RGS7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.358092e-01	ci left: 7.165494e-02	ci right 8.219310e-02	k: 768	n:10000
Cons ci ratio: 1.612434e-01	ci left: 5.128492e-02	ci right 6.037601e-02	k: 557	n:10000
KS ci ratio: 1.313289e-01	ci left: 7.640391e-02	ci right 8.724117e-02	k: 817	n:10000
RGS7   10000 perm   2 sec   (5413 perm/sec)   p_kst 8.170000e-02   p_cons 5.570000e-02   p_joint 7.680000e-02

Joint ci ratio: 1.246042e-01	ci left: 4.420494e-02	ci right 5.012760e-02	k: 942	n:20000
Cons ci ratio: 1.155061e-01	ci left: 5.129666e-02	ci right 5.763366e-02	k: 1088	n:20000
KS ci ratio: 9.317593e-02	ci left: 7.749952e-02	ci right 8.512273e-02	k: 1625	n:20000
RGS7   20000 perm   4 sec   (5006 perm/sec)   p_kst 8.125000e-02   p_cons 5.440000e-02   p_joint 4.710000e-02

Joint ci ratio: 1.152982e-01	ci left: 3.495708e-02	ci right 3.926649e-02	k: 1112	n:30000
Cons ci ratio: 9.620999e-02	ci left: 4.990524e-02	ci right 5.498188e-02	k: 1572	n:30000
KS ci ratio: 7.567381e-02	ci left: 7.898476e-02	ci right 8.522979e-02	k: 2462	n:30000
RGS7   30000 perm   6 sec   (4828 perm/sec)   p_kst 8.206667e-02   p_cons 5.240000e-02   p_joint 3.706667e-02

Joint ci ratio: 8.106766e-02	ci left: 5.298187e-02	ci right 5.748298e-02	k: 2208	n:40000
Cons ci ratio: 8.556866e-02	ci left: 4.771297e-02	ci right 5.200268e-02	k: 1993	n:40000
KS ci ratio: 6.526540e-02	ci left: 8.001871e-02	ci right 8.544204e-02	k: 3308	n:40000
RGS7   40000 perm   9 sec   (4679 perm/sec)   p_kst 8.270000e-02   p_cons 4.982500e-02   p_joint 5.520000e-02

Outputting figure to mutsig2_images.part000000000146/RGS7.13_1532_40000_0.0827_0.049825_0.0552.png
                gene_name: RGS7
               theta_stop: 0.086 
                    nperm: 40000 
                     p_ks: 0.083 
        ci_ks_bounds_left: 0.080 
       ci_ks_bounds_right: 0.085 
                   p_cons: 0.050 
      ci_cons_bounds_left: 0.048 
     ci_cons_bounds_right: 0.052 
                  p_joint: 0.055 
     ci_joint_bounds_left: 0.053 
    ci_joint_bounds_right: 0.057 

Current progress: 5 percent done.
RFX6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.301068e-01	ci left: 2.494902e-02	ci right 3.152965e-02	k: 281	n:10000
Cons ci ratio: 4.041214e-02	ci left: 4.748604e-01	ci right 4.945485e-01	k: 4847	n:10000
KS ci ratio: 4.045706e-01	ci left: 7.422760e-03	ci right 1.127121e-02	k: 92	n:10000
RFX6   10000 perm   2 sec   (5560 perm/sec)   p_kst 9.200000e-03   p_cons 4.847000e-01   p_joint 2.810000e-02

Joint ci ratio: 2.123661e-01	ci left: 1.496956e-02	ci right 1.857290e-02	k: 334	n:20000
Cons ci ratio: 2.883081e-02	ci left: 4.733541e-01	ci right 4.872516e-01	k: 9606	n:20000
KS ci ratio: 2.908546e-01	ci left: 7.691529e-03	ci right 1.035416e-02	k: 179	n:20000
RFX6   20000 perm   4 sec   (4727 perm/sec)   p_kst 8.950000e-03   p_cons 4.803000e-01   p_joint 1.670000e-02

Joint ci ratio: 1.171695e-01	ci left: 3.385556e-02	ci right 3.810159e-02	k: 1078	n:30000
Cons ci ratio: 2.426972e-02	ci left: 4.594428e-01	ci right 4.707639e-01	k: 13953	n:30000
KS ci ratio: 2.348645e-01	ci left: 8.119307e-03	ci right 1.031065e-02	k: 275	n:30000
RFX6   30000 perm   7 sec   (4599 perm/sec)   p_kst 9.166667e-03   p_cons 4.651000e-01   p_joint 3.593333e-02

Joint ci ratio: 1.432551e-01	ci left: 1.705728e-02	ci right 1.971329e-02	k: 734	n:40000
Cons ci ratio: 2.171591e-02	ci left: 4.440171e-01	ci right 4.537903e-01	k: 17956	n:40000
KS ci ratio: 2.050937e-01	ci left: 8.121507e-03	ci right 1.000080e-02	k: 361	n:40000
RFX6   40000 perm   9 sec   (4501 perm/sec)   p_kst 9.025000e-03   p_cons 4.489000e-01   p_joint 1.835000e-02

Joint ci ratio: 1.469072e-01	ci left: 1.300773e-02	ci right 1.508925e-02	k: 701	n:50000
Cons ci ratio: 1.941875e-02	ci left: 4.446533e-01	ci right 4.533926e-01	k: 22451	n:50000
KS ci ratio: 1.799625e-01	ci left: 8.553655e-03	ci right 1.026403e-02	k: 469	n:50000
RFX6   50000 perm   11 sec   (4382 perm/sec)   p_kst 9.380000e-03   p_cons 4.490200e-01   p_joint 1.402000e-02

Joint ci ratio: 1.461367e-01	ci left: 1.098343e-02	ci right 1.273094e-02	k: 710	n:60000
Cons ci ratio: 1.674727e-02	ci left: 4.732796e-01	ci right 4.812893e-01	k: 28637	n:60000
KS ci ratio: 1.660757e-01	ci left: 8.435560e-03	ci right 9.979140e-03	k: 551	n:60000
RFX6   60000 perm   14 sec   (4309 perm/sec)   p_kst 9.183333e-03   p_cons 4.772833e-01   p_joint 1.183333e-02

Joint ci ratio: 1.136891e-01	ci left: 1.574975e-02	ci right 1.766204e-02	k: 1168	n:70000
Cons ci ratio: 1.552404e-02	ci left: 4.729654e-01	ci right 4.803794e-01	k: 33367	n:70000
KS ci ratio: 1.538770e-01	ci left: 8.478507e-03	ci right 9.905480e-03	k: 642	n:70000
RFX6   70000 perm   16 sec   (4249 perm/sec)   p_kst 9.171429e-03   p_cons 4.766714e-01   p_joint 1.668571e-02

Joint ci ratio: 1.147094e-01	ci left: 1.356157e-02	ci right 1.522392e-02	k: 1150	n:80000
Cons ci ratio: 1.454575e-02	ci left: 4.723715e-01	ci right 4.793053e-01	k: 38067	n:80000
KS ci ratio: 1.417983e-01	ci left: 8.791150e-03	ci right 1.014478e-02	k: 756	n:80000
RFX6   80000 perm   19 sec   (4193 perm/sec)   p_kst 9.450000e-03   p_cons 4.758375e-01   p_joint 1.437500e-02

Joint ci ratio: 9.809645e-02	ci left: 1.657745e-02	ci right 1.829830e-02	k: 1568	n:90000
Cons ci ratio: 1.444190e-02	ci left: 4.468680e-01	ci right 4.533797e-01	k: 40511	n:90000
KS ci ratio: 1.329520e-01	ci left: 8.930267e-03	ci right 1.021275e-02	k: 860	n:90000
RFX6   90000 perm   22 sec   (4133 perm/sec)   p_kst 9.555556e-03   p_cons 4.501222e-01   p_joint 1.742222e-02

Joint ci ratio: 8.989549e-02	ci left: 1.782049e-02	ci right 1.950759e-02	k: 1865	n:100000
Cons ci ratio: 1.370863e-02	ci left: 4.467532e-01	ci right 4.529298e-01	k: 44984	n:100000
KS ci ratio: 1.237777e-01	ci left: 9.315005e-03	ci right 1.055367e-02	k: 992	n:100000
RFX6   100000 perm   25 sec   (4046 perm/sec)   p_kst 9.920000e-03   p_cons 4.498400e-01   p_joint 1.865000e-02

Joint ci ratio: 9.565915e-02	ci left: 1.431658e-02	ci right 1.576370e-02	k: 1653	n:110000
Cons ci ratio: 1.311553e-02	ci left: 4.452035e-01	ci right 4.510902e-01	k: 49296	n:110000
KS ci ratio: 1.187498e-01	ci left: 9.226269e-03	ci right 1.039979e-02	k: 1078	n:110000
RFX6   110000 perm   28 sec   (3991 perm/sec)   p_kst 9.800000e-03   p_cons 4.481455e-01   p_joint 1.502727e-02

Joint ci ratio: 8.779457e-02	ci left: 1.562371e-02	ci right 1.706647e-02	k: 1960	n:120000
Cons ci ratio: 1.255516e-02	ci left: 4.454084e-01	ci right 4.510441e-01	k: 53787	n:120000
KS ci ratio: 1.130219e-01	ci left: 9.363738e-03	ci right 1.049347e-02	k: 1190	n:120000
RFX6   120000 perm   31 sec   (3932 perm/sec)   p_kst 9.916667e-03   p_cons 4.482250e-01   p_joint 1.633333e-02

Joint ci ratio: 8.423786e-02	ci left: 1.569395e-02	ci right 1.708159e-02	k: 2129	n:130000
Cons ci ratio: 1.205517e-02	ci left: 4.458246e-01	ci right 4.512393e-01	k: 58309	n:130000
KS ci ratio: 1.082600e-01	ci left: 9.443776e-03	ci right 1.053210e-02	k: 1297	n:130000
RFX6   130000 perm   34 sec   (3879 perm/sec)   p_kst 9.976923e-03   p_cons 4.485308e-01   p_joint 1.637692e-02

Joint ci ratio: 7.105242e-02	ci left: 2.052197e-02	ci right 2.204080e-02	k: 2978	n:140000
Cons ci ratio: 1.163283e-02	ci left: 4.452356e-01	ci right 4.504523e-01	k: 62698	n:140000
KS ci ratio: 1.040534e-01	ci left: 9.513234e-03	ci right 1.056435e-02	k: 1404	n:140000
RFX6   140000 perm   37 sec   (3828 perm/sec)   p_kst 1.002857e-02   p_cons 4.478429e-01   p_joint 2.127143e-02

Joint ci ratio: 6.898386e-02	ci left: 2.034587e-02	ci right 2.180606e-02	k: 3160	n:150000
Cons ci ratio: 1.075743e-02	ci left: 4.670317e-01	ci right 4.720895e-01	k: 70434	n:150000
KS ci ratio: 1.002683e-01	ci left: 9.580640e-03	ci right 1.059843e-02	k: 1512	n:150000
RFX6   150000 perm   40 sec   (3763 perm/sec)   p_kst 1.008000e-02   p_cons 4.695600e-01   p_joint 2.106667e-02

Joint ci ratio: 6.981160e-02	ci left: 1.864991e-02	ci right 2.000509e-02	k: 3091	n:160000
Cons ci ratio: 1.083898e-02	ci left: 4.473415e-01	ci right 4.522228e-01	k: 71965	n:160000
KS ci ratio: 9.723262e-02	ci left: 9.567029e-03	ci right 1.055085e-02	k: 1608	n:160000
RFX6   160000 perm   43 sec   (3718 perm/sec)   p_kst 1.005000e-02   p_cons 4.497813e-01   p_joint 1.931875e-02

Outputting figure to mutsig2_images.part000000000146/RFX6.11_2863_160000_0.01005_0.44978_0.019319.png
                gene_name: RFX6
               theta_stop: 0.097 
                    nperm: 160000 
                     p_ks: 0.010 
        ci_ks_bounds_left: 0.0096 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.019 
     ci_joint_bounds_left: 0.019 
    ci_joint_bounds_right: 0.020 

Current progress: 7 percent done.
RHAG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.242615e-02	ci left: 3.490931e-01	ci right 3.679893e-01	k: 3585	n:10000
Cons ci ratio: 8.397618e-03	ci left: 9.520040e-01	ci right 9.601277e-01	k: 9562	n:10000
KS ci ratio: 7.056825e-02	ci left: 2.274091e-01	ci right 2.441451e-01	k: 2357	n:10000
RHAG   10000 perm   2 sec   (5553 perm/sec)   p_kst 2.357000e-01   p_cons 9.562000e-01   p_joint 3.585000e-01

Outputting figure to mutsig2_images.part000000000146/RHAG.9_1270_10000_0.2357_0.9562_0.3585.png
                gene_name: RHAG
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 9 percent done.
RGS22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.813674e-02	ci left: 8.160871e-01	ci right 8.311239e-01	k: 8237	n:10000
Cons ci ratio: 3.016084e-02	ci left: 6.185410e-01	ci right 6.375843e-01	k: 6281	n:10000
KS ci ratio: 3.727395e-02	ci left: 5.152564e-01	ci right 5.349290e-01	k: 5251	n:10000
RGS22   10000 perm   2 sec   (5130 perm/sec)   p_kst 5.251000e-01   p_cons 6.281000e-01   p_joint 8.237000e-01

Outputting figure to mutsig2_images.part000000000146/RGS22.8_3903_10000_0.5251_0.6281_0.8237.png
                gene_name: RGS22
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 11 percent done.
RGL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.200305e-02	ci left: 1.783175e-01	ci right 1.936658e-01	k: 1859	n:10000
Cons ci ratio: 6.443915e-02	ci left: 2.613165e-01	ci right 2.788176e-01	k: 2700	n:10000
KS ci ratio: 1.060498e-01	ci left: 1.137899e-01	ci right 1.266323e-01	k: 1201	n:10000
RGL1   10000 perm   2 sec   (6169 perm/sec)   p_kst 1.201000e-01   p_cons 2.700000e-01   p_joint 1.859000e-01

Joint ci ratio: 5.920113e-02	ci left: 1.744503e-01	ci right 1.851430e-01	k: 3595	n:20000
Cons ci ratio: 4.521579e-02	ci left: 2.669334e-01	ci right 2.793326e-01	k: 5462	n:20000
KS ci ratio: 7.484844e-02	ci left: 1.160678e-01	ci right 1.251428e-01	k: 2411	n:20000
RGL1   20000 perm   4 sec   (5512 perm/sec)   p_kst 1.205500e-01   p_cons 2.731000e-01   p_joint 1.797500e-01

Outputting figure to mutsig2_images.part000000000146/RGL1.6_2484_20000_0.12055_0.2731_0.17975.png
                gene_name: RGL1
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.19 

Current progress: 14 percent done.
RGS12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.696950e-02	ci left: 6.694464e-01	ci right 6.878494e-01	k: 6787	n:10000
Cons ci ratio: 6.635571e-02	ci left: 2.500393e-01	ci right 2.673015e-01	k: 2586	n:10000
KS ci ratio: 1.786148e-02	ci left: 8.205599e-01	ci right 8.354485e-01	k: 8281	n:10000
RGS12   10000 perm   2 sec   (4808 perm/sec)   p_kst 8.281000e-01   p_cons 2.586000e-01   p_joint 6.787000e-01

Outputting figure to mutsig2_images.part000000000146/RGS12.6_4487_10000_0.8281_0.2586_0.6787.png
                gene_name: RGS12
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 16 percent done.
RFWD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.575879e-02	ci left: 6.892979e-01	ci right 7.073865e-01	k: 6984	n:10000
Cons ci ratio: 6.916798e-02	ci left: 2.346196e-01	ci right 2.515303e-01	k: 2430	n:10000
KS ci ratio: 1.568697e-02	ci left: 8.550847e-01	ci right 8.687038e-01	k: 8620	n:10000
RFWD2   10000 perm   2 sec   (6104 perm/sec)   p_kst 8.620000e-01   p_cons 2.430000e-01   p_joint 6.984000e-01

Outputting figure to mutsig2_images.part000000000146/RFWD2.5_2276_10000_0.862_0.243_0.6984.png
                gene_name: RFWD2
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 18 percent done.
RGS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.356197e-02	ci left: 3.393548e-01	ci right 3.581334e-01	k: 3487	n:10000
Cons ci ratio: 8.355196e-02	ci left: 1.728091e-01	ci right 1.879776e-01	k: 1803	n:10000
KS ci ratio: 3.687240e-02	ci left: 5.206607e-01	ci right 5.403215e-01	k: 5305	n:10000
RGS3   10000 perm   2 sec   (5067 perm/sec)   p_kst 5.305000e-01   p_cons 1.803000e-01   p_joint 3.487000e-01

Outputting figure to mutsig2_images.part000000000146/RGS3.5_4373_10000_0.5305_0.1803_0.3487.png
                gene_name: RGS3
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 20 percent done.
RGS6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.987402e-02	ci left: 4.815553e-01	ci right 5.012497e-01	k: 4914	n:10000
Cons ci ratio: 2.198608e-02	ci left: 7.522125e-01	ci right 7.690354e-01	k: 7607	n:10000
KS ci ratio: 5.973631e-02	ci left: 2.919197e-01	ci right 3.099964e-01	k: 3009	n:10000
RGS6   10000 perm   2 sec   (6631 perm/sec)   p_kst 3.009000e-01   p_cons 7.607000e-01   p_joint 4.914000e-01

Outputting figure to mutsig2_images.part000000000146/RGS6.5_1483_10000_0.3009_0.7607_0.4914.png
                gene_name: RGS6
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 23 percent done.
RFPL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.892069e-02	ci left: 6.380444e-01	ci right 6.568696e-01	k: 6475	n:10000
Cons ci ratio: 1.643706e-02	ci left: 8.433592e-01	ci right 8.574360e-01	k: 8505	n:10000
KS ci ratio: 4.820135e-02	ci left: 3.883871e-01	ci right 4.076723e-01	k: 3980	n:10000
RFPL2   10000 perm   2 sec   (6248 perm/sec)   p_kst 3.980000e-01   p_cons 8.505000e-01   p_joint 6.475000e-01

Outputting figure to mutsig2_images.part000000000146/RFPL2.4_1235_10000_0.398_0.8505_0.6475.png
                gene_name: RFPL2
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 25 percent done.
RFPL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.834118e-02	ci left: 1.571841e-01	ci right 1.718119e-01	k: 1644	n:10000
Cons ci ratio: 2.524022e-02	ci left: 6.978692e-01	ci right 7.158101e-01	k: 7069	n:10000
KS ci ratio: 1.302908e-01	ci left: 7.756782e-02	ci right 8.847654e-02	k: 829	n:10000
RFPL3   10000 perm   2 sec   (6325 perm/sec)   p_kst 8.290000e-02   p_cons 7.069000e-01   p_joint 1.644000e-01

Joint ci ratio: 6.568640e-02	ci left: 1.461624e-01	ci right 1.561392e-01	k: 3022	n:20000
Cons ci ratio: 1.780708e-02	ci left: 7.014927e-01	ci right 7.141468e-01	k: 14157	n:20000
KS ci ratio: 9.616914e-02	ci left: 7.299974e-02	ci right 8.042388e-02	k: 1533	n:20000
RFPL3   20000 perm   3 sec   (5729 perm/sec)   p_kst 7.665000e-02   p_cons 7.078500e-01   p_joint 1.511000e-01

Outputting figure to mutsig2_images.part000000000146/RFPL3.4_962_20000_0.07665_0.70785_0.1511.png
                gene_name: RFPL3
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.077 
        ci_ks_bounds_left: 0.073 
       ci_ks_bounds_right: 0.080 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 27 percent done.
RFWD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.347270e-02	ci left: 2.672549e-01	ci right 2.848757e-01	k: 2760	n:10000
Cons ci ratio: 1.151171e-01	ci left: 9.788810e-02	ci right 1.099437e-01	k: 1038	n:10000
KS ci ratio: 2.912367e-02	ci left: 6.348262e-01	ci right 6.536897e-01	k: 6443	n:10000
RFWD3   10000 perm   2 sec   (5108 perm/sec)   p_kst 6.443000e-01   p_cons 1.038000e-01   p_joint 2.760000e-01

Joint ci ratio: 3.937113e-02	ci left: 3.248265e-01	ci right 3.379226e-01	k: 6627	n:20000
Cons ci ratio: 8.098908e-02	ci left: 1.005877e-01	ci right 1.091276e-01	k: 2096	n:20000
KS ci ratio: 2.041059e-02	ci left: 6.417365e-01	ci right 6.550203e-01	k: 12968	n:20000
RFWD3   20000 perm   4 sec   (4926 perm/sec)   p_kst 6.484000e-01   p_cons 1.048000e-01   p_joint 3.313500e-01

Outputting figure to mutsig2_images.part000000000146/RFWD3.4_2373_20000_0.6484_0.1048_0.33135.png
                gene_name: RFWD3
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 30 percent done.
RG9MTD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.148705e-01	ci left: 9.827781e-02	ci right 1.103538e-01	k: 1042	n:10000
Cons ci ratio: 1.571106e-01	ci left: 5.397934e-02	ci right 6.327985e-02	k: 585	n:10000
KS ci ratio: 7.389568e-02	ci left: 2.114201e-01	ci right 2.277435e-01	k: 2195	n:10000
RG9MTD1   10000 perm   2 sec   (6392 perm/sec)   p_kst 2.195000e-01   p_cons 5.850000e-02   p_joint 1.042000e-01

Joint ci ratio: 6.060305e-02	ci left: 1.677313e-01	ci right 1.782640e-01	k: 3459	n:20000
Cons ci ratio: 1.101510e-01	ci left: 5.626075e-02	ci right 6.286802e-02	k: 1190	n:20000
KS ci ratio: 5.204776e-02	ci left: 2.151664e-01	ci right 2.267148e-01	k: 4418	n:20000
RG9MTD1   20000 perm   4 sec   (5619 perm/sec)   p_kst 2.209000e-01   p_cons 5.950000e-02   p_joint 1.729500e-01

Joint ci ratio: 4.912232e-02	ci left: 1.707813e-01	ci right 1.794150e-01	k: 5252	n:30000
Cons ci ratio: 9.003241e-02	ci left: 5.675135e-02	ci right 6.213436e-02	k: 1782	n:30000
KS ci ratio: 4.299057e-02	ci left: 2.123134e-01	ci right 2.216748e-01	k: 6509	n:30000
RG9MTD1   30000 perm   6 sec   (5414 perm/sec)   p_kst 2.169667e-01   p_cons 5.940000e-02   p_joint 1.750667e-01

Outputting figure to mutsig2_images.part000000000146/RG9MTD1.4_1216_30000_0.21697_0.0594_0.17507.png
                gene_name: RG9MTD1
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.059 
      ci_cons_bounds_left: 0.057 
     ci_cons_bounds_right: 0.062 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 32 percent done.
RGL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.380585e-01	ci left: 6.942795e-02	ci right 7.982148e-02	k: 745	n:10000
Cons ci ratio: 1.189212e-01	ci left: 9.214310e-02	ci right 1.038923e-01	k: 979	n:10000
KS ci ratio: 9.408775e-02	ci left: 1.408974e-01	ci right 1.549084e-01	k: 1478	n:10000
RGL2   10000 perm   2 sec   (5639 perm/sec)   p_kst 1.478000e-01   p_cons 9.790000e-02   p_joint 7.450000e-02

Joint ci ratio: 9.599980e-02	ci left: 7.324420e-02	ci right 8.067935e-02	k: 1538	n:20000
Cons ci ratio: 8.840785e-02	ci left: 8.552962e-02	ci right 9.349019e-02	k: 1789	n:20000
KS ci ratio: 6.609905e-02	ci left: 1.445843e-01	ci right 1.545178e-01	k: 2990	n:20000
RGL2   20000 perm   4 sec   (5275 perm/sec)   p_kst 1.495000e-01   p_cons 8.945000e-02   p_joint 7.690000e-02

Outputting figure to mutsig2_images.part000000000146/RGL2.4_2402_20000_0.1495_0.08945_0.0769.png
                gene_name: RGL2
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.089 
      ci_cons_bounds_left: 0.086 
     ci_cons_bounds_right: 0.093 
                  p_joint: 0.077 
     ci_joint_bounds_left: 0.073 
    ci_joint_bounds_right: 0.081 

Current progress: 34 percent done.
RGS13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.239677e-02	ci left: 4.509930e-01	ci right 4.706299e-01	k: 4608	n:10000
Cons ci ratio: 9.973603e-02	ci left: 1.270870e-01	ci right 1.405271e-01	k: 1337	n:10000
KS ci ratio: 1.412003e-02	ci left: 8.787895e-01	ci right 8.913852e-01	k: 8852	n:10000
RGS13   10000 perm   1 sec   (7064 perm/sec)   p_kst 8.852000e-01   p_cons 1.337000e-01   p_joint 4.608000e-01

Outputting figure to mutsig2_images.part000000000146/RGS13.4_496_10000_0.8852_0.1337_0.4608.png
                gene_name: RGS13
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 36 percent done.
RHOBTB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.146253e-01	ci left: 9.866755e-02	ci right 1.107638e-01	k: 1046	n:10000
Cons ci ratio: 5.013582e-02	ci left: 3.697763e-01	ci right 3.888940e-01	k: 3793	n:10000
KS ci ratio: 1.384600e-01	ci left: 6.904079e-02	ci right 7.940888e-02	k: 741	n:10000
RHOBTB1   10000 perm   2 sec   (5913 perm/sec)   p_kst 7.410000e-02   p_cons 3.793000e-01   p_joint 1.046000e-01

Joint ci ratio: 8.133614e-02	ci left: 9.980216e-02	ci right 1.083133e-01	k: 2080	n:20000
Cons ci ratio: 3.514080e-02	ci left: 3.767535e-01	ci right 3.902803e-01	k: 7670	n:20000
KS ci ratio: 9.859149e-02	ci left: 6.962745e-02	ci right 7.689721e-02	k: 1464	n:20000
RHOBTB1   20000 perm   4 sec   (5401 perm/sec)   p_kst 7.320000e-02   p_cons 3.835000e-01   p_joint 1.040000e-01

Outputting figure to mutsig2_images.part000000000146/RHOBTB1.4_2127_20000_0.0732_0.3835_0.104.png
                gene_name: RHOBTB1
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.073 
        ci_ks_bounds_left: 0.070 
       ci_ks_bounds_right: 0.077 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.100 
    ci_joint_bounds_right: 0.11 

Current progress: 39 percent done.
RHOH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.365803e-01	ci left: 7.088017e-02	ci right 8.136835e-02	k: 760	n:10000
Cons ci ratio: 2.832774e-02	ci left: 6.475005e-01	ci right 6.662080e-01	k: 6569	n:10000
KS ci ratio: 1.585526e-01	ci left: 5.301669e-02	ci right 6.224312e-02	k: 575	n:10000
RHOH   10000 perm   2 sec   (6654 perm/sec)   p_kst 5.750000e-02   p_cons 6.569000e-01   p_joint 7.600000e-02

Joint ci ratio: 9.126482e-02	ci left: 8.058298e-02	ci right 8.833833e-02	k: 1688	n:20000
Cons ci ratio: 2.001599e-02	ci left: 6.506246e-01	ci right 6.638297e-01	k: 13145	n:20000
KS ci ratio: 1.120129e-01	ci left: 5.445922e-02	ci right 6.097011e-02	k: 1153	n:20000
RHOH   20000 perm   3 sec   (5788 perm/sec)   p_kst 5.765000e-02   p_cons 6.572500e-01   p_joint 8.440000e-02

Joint ci ratio: 7.475181e-02	ci left: 8.081931e-02	ci right 8.712819e-02	k: 2518	n:30000
Cons ci ratio: 1.628461e-02	ci left: 6.534701e-01	ci right 6.642325e-01	k: 19766	n:30000
KS ci ratio: 9.095804e-02	ci left: 5.564217e-02	ci right 6.097710e-02	k: 1748	n:30000
RHOH   30000 perm   5 sec   (5512 perm/sec)   p_kst 5.826667e-02   p_cons 6.588667e-01   p_joint 8.393333e-02

Outputting figure to mutsig2_images.part000000000146/RHOH.4_580_30000_0.058267_0.65887_0.083933.png
                gene_name: RHOH
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.058 
        ci_ks_bounds_left: 0.056 
       ci_ks_bounds_right: 0.061 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.084 
     ci_joint_bounds_left: 0.081 
    ci_joint_bounds_right: 0.087 

Current progress: 41 percent done.
RHOT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.551522e-02	ci left: 8.577378e-01	ci right 8.712491e-01	k: 8646	n:10000
Cons ci ratio: 3.555350e-02	ci left: 5.387836e-01	ci right 5.583881e-01	k: 5486	n:10000
KS ci ratio: 5.398911e-02	ci left: 3.357785e-01	ci right 3.545118e-01	k: 3451	n:10000
RHOT1   10000 perm   2 sec   (6497 perm/sec)   p_kst 3.451000e-01   p_cons 5.486000e-01   p_joint 8.646000e-01

Outputting figure to mutsig2_images.part000000000146/RHOT1.4_2160_10000_0.3451_0.5486_0.8646.png
                gene_name: RHOT1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 43 percent done.
RHOU
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.958397e-02	ci left: 2.324462e-01	ci right 2.493050e-01	k: 2408	n:10000
Cons ci ratio: 8.540610e-02	ci left: 1.665170e-01	ci right 1.814734e-01	k: 1739	n:10000
KS ci ratio: 4.703470e-02	ci left: 4.001384e-01	ci right 4.195142e-01	k: 4098	n:10000
RHOU   10000 perm   2 sec   (6469 perm/sec)   p_kst 4.098000e-01   p_cons 1.739000e-01   p_joint 2.408000e-01

Outputting figure to mutsig2_images.part000000000146/RHOU.4_789_10000_0.4098_0.1739_0.2408.png
                gene_name: RHOU
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 45 percent done.
RFTN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.639027e-02	ci left: 3.165168e-01	ci right 3.349849e-01	k: 3257	n:10000
Cons ci ratio: 2.575267e-02	ci left: 6.893987e-01	ci right 7.074856e-01	k: 6985	n:10000
KS ci ratio: 9.280271e-02	ci left: 1.443289e-01	ci right 1.584748e-01	k: 1513	n:10000
RFTN2   10000 perm   1 sec   (6806 perm/sec)   p_kst 1.513000e-01   p_cons 6.985000e-01   p_joint 3.257000e-01

Outputting figure to mutsig2_images.part000000000146/RFTN2.3_1542_10000_0.1513_0.6985_0.3257.png
                gene_name: RFTN2
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 48 percent done.
RFX3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.903571e-02	ci left: 8.013591e-01	ci right 8.168604e-01	k: 8092	n:10000
Cons ci ratio: 2.559995e-02	ci left: 6.919193e-01	ci right 7.099635e-01	k: 7010	n:10000
KS ci ratio: 4.326865e-02	ci left: 4.409135e-01	ci right 4.605152e-01	k: 4507	n:10000
RFX3   10000 perm   2 sec   (6241 perm/sec)   p_kst 4.507000e-01   p_cons 7.010000e-01   p_joint 8.092000e-01

Outputting figure to mutsig2_images.part000000000146/RFX3.3_2470_10000_0.4507_0.701_0.8092.png
                gene_name: RFX3
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 50 percent done.
RFX4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.094056e-02	ci left: 9.225516e-01	ci right 9.327976e-01	k: 9278	n:10000
Cons ci ratio: 3.908455e-02	ci left: 4.915510e-01	ci right 5.112482e-01	k: 5014	n:10000
KS ci ratio: 4.189691e-02	ci left: 4.568828e-01	ci right 4.765366e-01	k: 4667	n:10000
RFX4   10000 perm   2 sec   (6532 perm/sec)   p_kst 4.667000e-01   p_cons 5.014000e-01   p_joint 9.278000e-01

Outputting figure to mutsig2_images.part000000000146/RFX4.3_2485_10000_0.4667_0.5014_0.9278.png
                gene_name: RFX4
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 52 percent done.
RGL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.851811e-02	ci left: 4.988503e-01	ci right 5.185446e-01	k: 5087	n:10000
Cons ci ratio: 6.443915e-02	ci left: 2.613165e-01	ci right 2.788176e-01	k: 2700	n:10000
KS ci ratio: 5.827831e-02	ci left: 3.023301e-01	ci right 3.205799e-01	k: 3114	n:10000
RGL3   10000 perm   2 sec   (6549 perm/sec)   p_kst 3.114000e-01   p_cons 2.700000e-01   p_joint 5.087000e-01

Outputting figure to mutsig2_images.part000000000146/RGL3.3_2227_10000_0.3114_0.27_0.5087.png
                gene_name: RGL3
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 55 percent done.
RGNEF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.187238e-02	ci left: 3.539639e-01	ci right 3.729157e-01	k: 3634	n:10000
Cons ci ratio: 1.604756e-02	ci left: 8.494749e-01	ci right 8.633167e-01	k: 8565	n:10000
KS ci ratio: 7.402527e-02	ci left: 2.108283e-01	ci right 2.271357e-01	k: 2189	n:10000
RGNEF   10000 perm   2 sec   (5355 perm/sec)   p_kst 2.189000e-01   p_cons 8.565000e-01   p_joint 3.634000e-01

Outputting figure to mutsig2_images.part000000000146/RGNEF.3_5340_10000_0.2189_0.8565_0.3634.png
                gene_name: RGNEF
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 57 percent done.
RGS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.465614e-02	ci left: 8.708117e-01	ci right 8.837677e-01	k: 8774	n:10000
KS ci ratio: 3.383534e-02	ci left: 5.632351e-01	ci right 5.827224e-01	k: 5730	n:10000
RGS1   10000 perm   1 sec   (6942 perm/sec)   p_kst 5.730000e-01   p_cons 8.774000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000146/RGS1.3_650_10000_0.573_0.8774_1.png
                gene_name: RGS1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 59 percent done.
RHD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.914909e-02	ci left: 6.344240e-01	ci right 6.532922e-01	k: 6439	n:10000
Cons ci ratio: 1.509535e-02	ci left: 8.641699e-01	ci right 8.774133e-01	k: 8709	n:10000
KS ci ratio: 4.952396e-02	ci left: 3.755471e-01	ci right 3.947199e-01	k: 3851	n:10000
RHD   10000 perm   2 sec   (6527 perm/sec)   p_kst 3.851000e-01   p_cons 8.709000e-01   p_joint 6.439000e-01

Outputting figure to mutsig2_images.part000000000146/RHD.3_1294_10000_0.3851_0.8709_0.6439.png
                gene_name: RHD
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 61 percent done.
RHOBTB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.936692e-02	ci left: 4.879521e-01	ci right 5.076492e-01	k: 4978	n:10000
Cons ci ratio: 1.190559e-01	ci left: 9.194847e-02	ci right 1.036870e-01	k: 977	n:10000
KS ci ratio: 2.559995e-02	ci left: 6.919193e-01	ci right 7.099635e-01	k: 7010	n:10000
RHOBTB2   10000 perm   2 sec   (6617 perm/sec)   p_kst 7.010000e-01   p_cons 9.770000e-02   p_joint 4.978000e-01

Joint ci ratio: 3.410101e-02	ci left: 3.910070e-01	ci right 4.046227e-01	k: 7956	n:20000
Cons ci ratio: 8.383109e-02	ci left: 9.440373e-02	ci right 1.027134e-01	k: 1970	n:20000
KS ci ratio: 1.842248e-02	ci left: 6.871582e-01	ci right 6.999855e-01	k: 13872	n:20000
RHOBTB2   20000 perm   3 sec   (5796 perm/sec)   p_kst 6.936000e-01   p_cons 9.850000e-02   p_joint 3.978000e-01

Outputting figure to mutsig2_images.part000000000146/RHOBTB2.3_2305_20000_0.6936_0.0985_0.3978.png
                gene_name: RHOBTB2
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.099 
      ci_cons_bounds_left: 0.094 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.40 

Current progress: 64 percent done.
RHOJ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.387683e-02	ci left: 5.626335e-01	ci right 5.821243e-01	k: 5724	n:10000
KS ci ratio: 1.273416e-02	ci left: 8.986739e-01	ci right 9.102893e-01	k: 9046	n:10000
RHOJ   10000 perm   2 sec   (6596 perm/sec)   p_kst 9.046000e-01   p_cons 5.724000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000146/RHOJ.3_665_10000_0.9046_0.5724_1.png
                gene_name: RHOJ
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 66 percent done.
RHPN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.572211e-02	ci left: 6.899028e-01	ci right 7.079812e-01	k: 6990	n:10000
KS ci ratio: 1.456068e-02	ci left: 8.722429e-01	ci right 8.851355e-01	k: 8788	n:10000
RHPN1   10000 perm   2 sec   (6421 perm/sec)   p_kst 8.788000e-01   p_cons 6.990000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000146/RHPN1.3_2073_10000_0.8788_0.699_1.png
                gene_name: RHPN1
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
RFPL4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.577857e-03	ci left: 9.693152e-01	ci right 9.758056e-01	k: 9727	n:10000
Cons ci ratio: 1.478520e-02	ci left: 8.688696e-01	ci right 8.819108e-01	k: 8755	n:10000
KS ci ratio: 2.962099e-02	ci left: 6.269838e-01	ci right 6.459367e-01	k: 6365	n:10000
RFPL4B   10000 perm   1 sec   (7129 perm/sec)   p_kst 6.365000e-01   p_cons 8.755000e-01   p_joint 9.727000e-01

Outputting figure to mutsig2_images.part000000000146/RFPL4B.2_796_10000_0.6365_0.8755_0.9727.png
                gene_name: RFPL4B
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 70 percent done.
RFX7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.722967e-02	ci left: 3.981463e-01	ci right 4.175075e-01	k: 4078	n:10000
Cons ci ratio: 2.119438e-02	ci left: 7.654710e-01	ci right 7.819693e-01	k: 7738	n:10000
KS ci ratio: 1.232190e-01	ci left: 8.621021e-02	ci right 9.762881e-02	k: 918	n:10000
RFX7   10000 perm   2 sec   (5735 perm/sec)   p_kst 9.180000e-02   p_cons 7.738000e-01   p_joint 4.078000e-01

Joint ci ratio: 2.435471e-02	ci left: 5.573941e-01	ci right 5.711872e-01	k: 11286	n:20000
Cons ci ratio: 1.501660e-02	ci left: 7.672310e-01	ci right 7.788895e-01	k: 15462	n:20000
KS ci ratio: 8.752461e-02	ci left: 8.714669e-02	ci right 9.517263e-02	k: 1822	n:20000
RFX7   20000 perm   4 sec   (5115 perm/sec)   p_kst 9.110000e-02   p_cons 7.731000e-01   p_joint 5.643000e-01

Outputting figure to mutsig2_images.part000000000146/RFX7.2_4419_20000_0.0911_0.7731_0.5643.png
                gene_name: RFX7
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.091 
        ci_ks_bounds_left: 0.087 
       ci_ks_bounds_right: 0.095 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.57 

Current progress: 73 percent done.
RGAG4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.920980e-02	ci left: 4.899514e-01	ci right 5.096487e-01	k: 4998	n:10000
KS ci ratio: 1.489344e-02	ci left: 8.672346e-01	ci right 8.803468e-01	k: 8739	n:10000
RGAG4   10000 perm   1 sec   (6735 perm/sec)   p_kst 8.739000e-01   p_cons 4.998000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000146/RGAG4.2_1714_10000_0.8739_0.4998_1.png
                gene_name: RGAG4
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
RGL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.825522e-02	ci left: 8.141562e-01	ci right 8.292559e-01	k: 8218	n:10000
Cons ci ratio: 2.054571e-02	ci left: 7.763090e-01	ci right 7.925250e-01	k: 7845	n:10000
KS ci ratio: 4.115543e-02	ci left: 4.657702e-01	ci right 4.854441e-01	k: 4756	n:10000
RGL4   10000 perm   2 sec   (6544 perm/sec)   p_kst 4.756000e-01   p_cons 7.845000e-01   p_joint 8.218000e-01

Outputting figure to mutsig2_images.part000000000146/RGL4.2_1466_10000_0.4756_0.7845_0.8218.png
                gene_name: RGL4
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 77 percent done.
RGS17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.549450e-02	ci left: 4.162808e-01	ci right 4.357623e-01	k: 4260	n:10000
KS ci ratio: 1.916501e-02	ci left: 7.992275e-01	ci right 8.147933e-01	k: 8071	n:10000
RGS17   10000 perm   1 sec   (7125 perm/sec)   p_kst 8.071000e-01   p_cons 4.260000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000146/RGS17.2_649_10000_0.8071_0.426_1.png
                gene_name: RGS17
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
RGS21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.273432e-02	ci left: 7.396724e-01	ci right 7.567828e-01	k: 7483	n:10000
KS ci ratio: 4.114056e-03	ci left: 9.869754e-01	ci right 9.911324e-01	k: 9892	n:10000
RGS21   10000 perm   1 sec   (7162 perm/sec)   p_kst 9.892000e-01   p_cons 7.483000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000146/RGS21.2_475_10000_0.9892_0.7483_1.png
                gene_name: RGS21
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
RGS5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.284938e-03	ci left: 9.629948e-01	ci right 9.701301e-01	k: 9667	n:10000
Cons ci ratio: 2.883840e-02	ci left: 6.393519e-01	ci right 6.581613e-01	k: 6488	n:10000
KS ci ratio: 9.066260e-03	ci left: 9.448175e-01	ci right 9.535185e-01	k: 9493	n:10000
RGS5   10000 perm   1 sec   (7246 perm/sec)   p_kst 9.493000e-01   p_cons 6.488000e-01   p_joint 9.667000e-01

Outputting figure to mutsig2_images.part000000000146/RGS5.2_566_10000_0.9493_0.6488_0.9667.png
                gene_name: RGS5
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 84 percent done.
RGS8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.073728e-02	ci left: 3.642059e-01	ci right 3.832677e-01	k: 3737	n:10000
Cons ci ratio: 9.401317e-02	ci left: 1.410934e-01	ci right 1.551123e-01	k: 1480	n:10000
KS ci ratio: 1.259363e-02	ci left: 9.006249e-01	ci right 9.121371e-01	k: 9065	n:10000
RGS8   10000 perm   1 sec   (7143 perm/sec)   p_kst 9.065000e-01   p_cons 1.480000e-01   p_joint 3.737000e-01

Outputting figure to mutsig2_images.part000000000146/RGS8.2_651_10000_0.9065_0.148_0.3737.png
                gene_name: RGS8
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 86 percent done.
RGS9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.661417e-02	ci left: 5.241642e-01	ci right 5.438160e-01	k: 5340	n:10000
Cons ci ratio: 5.285046e-02	ci left: 3.454159e-01	ci right 3.642687e-01	k: 3548	n:10000
KS ci ratio: 4.158686e-02	ci left: 4.605772e-01	ci right 4.802401e-01	k: 4704	n:10000
RGS9   10000 perm   2 sec   (6339 perm/sec)   p_kst 4.704000e-01   p_cons 3.548000e-01   p_joint 5.340000e-01

Outputting figure to mutsig2_images.part000000000146/RGS9.2_2156_10000_0.4704_0.3548_0.534.png
                gene_name: RGS9
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 89 percent done.
RHBDD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.725614e-02	ci left: 8.303250e-01	ci right 8.448778e-01	k: 8377	n:10000
Cons ci ratio: 3.789127e-02	ci left: 5.070521e-01	ci right 5.267381e-01	k: 5169	n:10000
KS ci ratio: 6.117213e-02	ci left: 2.821093e-01	ci right 3.000126e-01	k: 2910	n:10000
RHBDD1   10000 perm   1 sec   (6670 perm/sec)   p_kst 2.910000e-01   p_cons 5.169000e-01   p_joint 8.377000e-01

Outputting figure to mutsig2_images.part000000000146/RHBDD1.2_972_10000_0.291_0.5169_0.8377.png
                gene_name: RHBDD1
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 91 percent done.
RHBDF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.853489e-02	ci left: 2.379790e-01	ci right 2.549689e-01	k: 2464	n:10000
Cons ci ratio: 1.020373e-01	ci left: 1.219999e-01	ci right 1.352172e-01	k: 1285	n:10000
KS ci ratio: 8.222034e-02	ci left: 1.775304e-01	ci right 1.928534e-01	k: 1851	n:10000
RHBDF2   10000 perm   2 sec   (6170 perm/sec)   p_kst 1.851000e-01   p_cons 1.285000e-01   p_joint 2.464000e-01

Joint ci ratio: 4.895614e-02	ci left: 2.367712e-01	ci right 2.487037e-01	k: 4854	n:20000
Cons ci ratio: 7.142143e-02	ci left: 1.262051e-01	ci right 1.356025e-01	k: 2617	n:20000
KS ci ratio: 5.885224e-02	ci left: 1.761799e-01	ci right 1.869129e-01	k: 3630	n:20000
RHBDF2   20000 perm   4 sec   (5594 perm/sec)   p_kst 1.815000e-01   p_cons 1.308500e-01   p_joint 2.427000e-01

Outputting figure to mutsig2_images.part000000000146/RHBDF2.2_2639_20000_0.1815_0.13085_0.2427.png
                gene_name: RHBDF2
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 93 percent done.
RHBDL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.803301e-02	ci left: 6.522301e-01	ci right 6.708757e-01	k: 6616	n:10000
KS ci ratio: 2.770196e-02	ci left: 6.575647e-01	ci right 6.761380e-01	k: 6669	n:10000
RHBDL2   10000 perm   1 sec   (7123 perm/sec)   p_kst 6.669000e-01   p_cons 6.616000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000146/RHBDL2.2_940_10000_0.6669_0.6616_1.png
                gene_name: RHBDL2
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
RHBDL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.932931e-01	ci left: 3.567168e-02	ci right 4.339951e-02	k: 394	n:10000
Cons ci ratio: 3.045107e-01	ci left: 1.381734e-02	ci right 1.887010e-02	k: 162	n:10000
KS ci ratio: 7.049003e-02	ci left: 2.278041e-01	ci right 2.445498e-01	k: 2361	n:10000
RHBDL3   10000 perm   1 sec   (6777 perm/sec)   p_kst 2.361000e-01   p_cons 1.620000e-02   p_joint 3.940000e-02

Joint ci ratio: 2.146584e-01	ci left: 1.463801e-02	ci right 1.820458e-02	k: 327	n:20000
Cons ci ratio: 2.149918e-01	ci left: 1.459066e-02	ci right 1.815195e-02	k: 326	n:20000
KS ci ratio: 5.051673e-02	ci left: 2.255201e-01	ci right 2.372581e-01	k: 4627	n:20000
RHBDL3   20000 perm   3 sec   (6247 perm/sec)   p_kst 2.313500e-01   p_cons 1.630000e-02   p_joint 1.635000e-02

Joint ci ratio: 1.722679e-01	ci left: 1.550360e-02	ci right 1.845768e-02	k: 508	n:30000
Cons ci ratio: 1.738379e-01	ci left: 1.521640e-02	ci right 1.814495e-02	k: 499	n:30000
KS ci ratio: 4.166086e-02	ci left: 2.230969e-01	ci right 2.326225e-01	k: 6835	n:30000
RHBDL3   30000 perm   5 sec   (6000 perm/sec)   p_kst 2.278333e-01   p_cons 1.663333e-02   p_joint 1.693333e-02

Joint ci ratio: 1.778438e-01	ci left: 1.093208e-02	ci right 1.308963e-02	k: 479	n:40000
Cons ci ratio: 1.496006e-01	ci left: 1.561134e-02	ci right 1.815949e-02	k: 674	n:40000
KS ci ratio: 3.603761e-02	ci left: 2.241443e-01	ci right 2.323952e-01	k: 9130	n:40000
RHBDL3   40000 perm   7 sec   (5750 perm/sec)   p_kst 2.282500e-01   p_cons 1.685000e-02   p_joint 1.197500e-02

Joint ci ratio: 1.146652e-01	ci left: 2.152885e-02	ci right 2.416695e-02	k: 1141	n:50000
Cons ci ratio: 1.320471e-01	ci left: 1.617522e-02	ci right 1.848131e-02	k: 865	n:50000
KS ci ratio: 3.222710e-02	ci left: 2.246466e-01	ci right 2.320249e-01	k: 11416	n:50000
RHBDL3   50000 perm   9 sec   (5622 perm/sec)   p_kst 2.283200e-01   p_cons 1.730000e-02   p_joint 2.282000e-02

Joint ci ratio: 1.056814e-01	ci left: 2.123074e-02	ci right 2.361576e-02	k: 1344	n:60000
Cons ci ratio: 1.198516e-01	ci left: 1.646585e-02	ci right 1.858118e-02	k: 1050	n:60000
KS ci ratio: 2.936976e-02	ci left: 2.255598e-01	ci right 2.322998e-01	k: 13735	n:60000
RHBDL3   60000 perm   11 sec   (5510 perm/sec)   p_kst 2.289167e-01   p_cons 1.750000e-02   p_joint 2.240000e-02

Joint ci ratio: 1.013731e-01	ci left: 1.985304e-02	ci right 2.198693e-02	k: 1463	n:70000
Cons ci ratio: 1.115256e-01	ci left: 1.637479e-02	ci right 1.832266e-02	k: 1213	n:70000
KS ci ratio: 2.723889e-02	ci left: 2.251948e-01	ci right 2.314278e-01	k: 15981	n:70000
RHBDL3   70000 perm   13 sec   (5413 perm/sec)   p_kst 2.283000e-01   p_cons 1.732857e-02   p_joint 2.090000e-02

Joint ci ratio: 1.008786e-01	ci left: 1.758967e-02	ci right 1.947047e-02	k: 1481	n:80000
Cons ci ratio: 1.046467e-01	ci left: 1.633470e-02	ci right 1.815055e-02	k: 1378	n:80000
KS ci ratio: 2.545180e-02	ci left: 2.257808e-01	ci right 2.316139e-01	k: 18295	n:80000
RHBDL3   80000 perm   15 sec   (5312 perm/sec)   p_kst 2.286875e-01   p_cons 1.722500e-02   p_joint 1.851250e-02

Joint ci ratio: 8.938552e-02	ci left: 1.998620e-02	ci right 2.186707e-02	k: 1882	n:90000
Cons ci ratio: 9.857711e-02	ci left: 1.641482e-02	ci right 1.812761e-02	k: 1553	n:90000
KS ci ratio: 2.398562e-02	ci left: 2.261031e-01	ci right 2.316032e-01	k: 20596	n:90000
RHBDL3   90000 perm   17 sec   (5198 perm/sec)   p_kst 2.288444e-01   p_cons 1.725556e-02   p_joint 2.091111e-02

Outputting figure to mutsig2_images.part000000000146/RHBDL3.2_1251_90000_0.22884_0.017256_0.020911.png
                gene_name: RHBDL3
               theta_stop: 0.099 
                    nperm: 90000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.017 
      ci_cons_bounds_left: 0.016 
     ci_cons_bounds_right: 0.018 
                  p_joint: 0.021 
     ci_joint_bounds_left: 0.020 
    ci_joint_bounds_right: 0.022 

Current progress: 98 percent done.
RHOC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.034830e-02	ci left: 6.156270e-01	ci right 6.347000e-01	k: 6252	n:10000
KS ci ratio: 2.338006e-02	ci left: 7.288590e-01	ci right 7.462025e-01	k: 7376	n:10000
RHOC   10000 perm   1 sec   (7170 perm/sec)   p_kst 7.376000e-01   p_cons 6.252000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000146/RHOC.2_598_10000_0.7376_0.6252_1.png
                gene_name: RHOC
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000146
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 146 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1538>
Subject: Job 8004500: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1538>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000147> was used as the working directory.
Started at Sun Nov 11 15:15:44 2012
Results reported at Sun Nov 11 15:25:27 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000147.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000147.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 147  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000147.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    718.07 sec.
    Max Memory :      4763 MB
    Max Swap   :      7041 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
147
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 147
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 147: processing genes 13210 - 13299
Calculating significance of each gene.
Using projection method.
13210	RHPN2	1
13211	RIBC1	1
13212	RIBC2	1
13213	RIC3	4.226345e-01
13214	RIC8A	5.306816e-01
13215	RIC8B	4.333284e-01
13216	RICH2	7.179805e-01
13217	RICTOR	9.963250e-01
13218	RIF1	8.450419e-01
13219	RILP	4.859928e-01
13220	RILPL1	4.954282e-01
13221	RILPL2	1
13222	RIMBP2	9.653842e-01
13223	RIMKLA	4.506941e-01
13224	RIMKLB	1.274192e-01
13225	RIMS1	8.333524e-01
13226	RIMS2	1.545657e-04
13227	RIMS3	5.902969e-01
13228	RIMS4	2.813940e-01
13229	RIN1	1
13230	RIN2	8.987775e-01
13231	RIN3	1.095401e-01
13232	RING1	5.669759e-01
13233	RINL	8.468242e-01
13234	RINT1	3.415648e-01
13235	RIOK1	1
13236	RIOK2	1
13237	RIOK3	1
13238	RIPK1	1
13239	RIPK2	5.486666e-01
13240	RIPK3	7.884566e-01
13241	RIPK4	9.237725e-01
13242	RIPPLY1	1
13243	RIPPLY2	1
13244	RIT1	5.361055e-01
13245	RIT2	1
13246	RLBP1	1
13247	RLF	9.959739e-01
13248	RLIM	1
13249	RLN1	1
13250	RLN2	1.636501e-01
13251	RLN3	1
13252	RLTPR	8.743583e-01
13253	RMI1	1
13254	RMND1	4.605563e-01
13255	RMND5A	1.342000e-01
13256	RMND5B	7.680213e-01
13257	RNASE1	1
13258	RNASE10	5.416911e-02
13259	RNASE11	1.006789e-01
13260	RNASE12	2.161075e-01
13261	RNASE13	3.280427e-02
13262	RNASE2	1.304927e-01
13263	RNASE3	3.512134e-02
13264	RNASE4	4.511222e-01
13265	RNASE6	1
13266	RNASE7	1
13267	RNASE8	1
13268	RNASE9	1
13269	RNASEH1	3.184765e-01
13270	RNASEH2A	1
13271	RNASEH2B	4.854987e-01
13272	RNASEH2C	1
13273	RNASEK	9.438540e-02
13274	RNASEL	8.743119e-01
13275	RNASEN	2.851369e-03
13276	RNASET2	1
13277	RND1	1
13278	RND2	1
13279	RND3	2.431092e-01
13280	RNF10	5.623758e-01
13281	RNF103	7.961818e-01
13282	RNF11	1
13283	RNF111	5.124390e-01
13284	RNF112	1
13285	RNF113A	3.738958e-01
13286	RNF113B	1
13287	RNF114	3.366688e-01
13288	RNF115	7.227065e-01
13289	RNF121	7.064459e-01
13290	RNF122	1
13291	RNF123	1
13292	RNF125	1.716520e-01
13293	RNF126	3.653877e-01
13294	RNF128	6.580805e-01
13295	RNF13	3.024360e-01
13296	RNF130	1
13297	RNF133	8.722097e-02
13298	RNF135	1
13299	RNF138	1.897992e-01
Done

Running MutSig 2:
Scatter job 147: processing genes 13210 - 13299
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
RIMS2
Processing conservation and coverage...
Processing mutations... 
Skipping 4 mutations outside exons of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.854737e-02	ci left: 8.093811e-01	ci right 8.246338e-01	k: 8171	n:10000
Cons ci ratio: 3.843345e-02	ci left: 4.999504e-01	ci right 5.196439e-01	k: 5098	n:10000
KS ci ratio: 3.096001e-02	ci left: 6.061840e-01	ci right 6.253485e-01	k: 6158	n:10000
RIMS2   10000 perm   3 sec   (3469 perm/sec)   p_kst 6.158000e-01   p_cons 5.098000e-01   p_joint 8.171000e-01

Outputting figure to mutsig2_images.part000000000147/RIMS2.19_4342_10000_0.6158_0.5098_0.8171.png
                gene_name: RIMS2
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 2 percent done.
RIMS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.784639e-02	ci left: 3.055038e-01	ci right 3.238042e-01	k: 3146	n:10000
Cons ci ratio: 2.637780e-02	ci left: 6.791178e-01	ci right 6.973724e-01	k: 6883	n:10000
KS ci ratio: 8.349549e-02	ci left: 1.730058e-01	ci right 1.881808e-01	k: 1805	n:10000
RIMS1   10000 perm   3 sec   (3250 perm/sec)   p_kst 1.805000e-01   p_cons 6.883000e-01   p_joint 3.146000e-01

Outputting figure to mutsig2_images.part000000000147/RIMS1.14_5378_10000_0.1805_0.6883_0.3146.png
                gene_name: RIMS1
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 5 percent done.
RNASEN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.708756e-02	ci left: 5.177583e-01	ci right 5.374256e-01	k: 5276	n:10000
Cons ci ratio: 6.006440e-02	ci left: 2.896400e-01	ci right 3.076774e-01	k: 2986	n:10000
KS ci ratio: 4.206560e-02	ci left: 4.548861e-01	ci right 4.745345e-01	k: 4647	n:10000
RNASEN   10000 perm   3 sec   (3733 perm/sec)   p_kst 4.647000e-01   p_cons 2.986000e-01   p_joint 5.276000e-01

Outputting figure to mutsig2_images.part000000000147/RNASEN.13_4257_10000_0.4647_0.2986_0.5276.png
                gene_name: RNASEN
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 7 percent done.
RIMBP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.687871e-02	ci left: 2.470728e-01	ci right 2.642697e-01	k: 2556	n:10000
Cons ci ratio: 6.751719e-02	ci left: 2.435138e-01	ci right 2.606309e-01	k: 2520	n:10000
KS ci ratio: 5.742002e-02	ci left: 3.086781e-01	ci right 3.270281e-01	k: 3178	n:10000
RIMBP2   10000 perm   2 sec   (4328 perm/sec)   p_kst 3.178000e-01   p_cons 2.520000e-01   p_joint 2.556000e-01

Outputting figure to mutsig2_images.part000000000147/RIMBP2.8_3227_10000_0.3178_0.252_0.2556.png
                gene_name: RIMBP2
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 9 percent done.
RIF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.831063e-02	ci left: 5.015506e-01	ci right 5.212428e-01	k: 5114	n:10000
Cons ci ratio: 6.992814e-02	ci left: 2.306682e-01	ci right 2.474840e-01	k: 2390	n:10000
KS ci ratio: 3.769452e-02	ci left: 5.096532e-01	ci right 5.293355e-01	k: 5195	n:10000
RIF1   10000 perm   3 sec   (3118 perm/sec)   p_kst 5.195000e-01   p_cons 2.390000e-01   p_joint 5.114000e-01

Outputting figure to mutsig2_images.part000000000147/RIF1.7_7559_10000_0.5195_0.239_0.5114.png
                gene_name: RIF1
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 12 percent done.
RIN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.154273e-01	ci left: 9.740099e-02	ci right 1.094311e-01	k: 1033	n:10000
Cons ci ratio: 3.301551e-01	ci left: 1.160595e-02	ci right 1.628351e-02	k: 138	n:10000
KS ci ratio: 2.396621e-02	ci left: 7.190618e-01	ci right 7.366053e-01	k: 7279	n:10000
RIN3   10000 perm   2 sec   (4840 perm/sec)   p_kst 7.279000e-01   p_cons 1.380000e-02   p_joint 1.033000e-01

Joint ci ratio: 1.003390e-01	ci left: 6.733170e-02	ci right 7.449365e-02	k: 1417	n:20000
Cons ci ratio: 2.391972e-01	ci left: 1.166433e-02	ci right 1.487948e-02	k: 264	n:20000
KS ci ratio: 1.722308e-02	ci left: 7.151803e-01	ci right 7.276553e-01	k: 14429	n:20000
RIN3   20000 perm   5 sec   (4360 perm/sec)   p_kst 7.214500e-01   p_cons 1.320000e-02   p_joint 7.085000e-02

Joint ci ratio: 8.597733e-02	ci left: 6.200726e-02	ci right 6.761072e-02	k: 1943	n:30000
Cons ci ratio: 1.939500e-01	ci left: 1.212952e-02	ci right 1.476595e-02	k: 402	n:30000
KS ci ratio: 1.416010e-02	ci left: 7.135408e-01	ci right 7.237501e-01	k: 21560	n:30000
RIN3   30000 perm   7 sec   (4184 perm/sec)   p_kst 7.186667e-01   p_cons 1.340000e-02   p_joint 6.476667e-02

Joint ci ratio: 7.728741e-02	ci left: 5.808490e-02	ci right 6.277917e-02	k: 2416	n:40000
Cons ci ratio: 1.655371e-01	ci left: 1.267965e-02	ci right 1.499172e-02	k: 552	n:40000
KS ci ratio: 1.256959e-02	ci left: 7.040943e-01	ci right 7.130255e-01	k: 28343	n:40000
RIN3   40000 perm   10 sec   (4064 perm/sec)   p_kst 7.085750e-01   p_cons 1.380000e-02   p_joint 6.040000e-02

Joint ci ratio: 7.486655e-02	ci left: 5.003065e-02	ci right 5.394158e-02	k: 2598	n:50000
Cons ci ratio: 1.498575e-01	ci left: 1.248753e-02	ci right 1.452953e-02	k: 674	n:50000
KS ci ratio: 1.128332e-02	ci left: 7.030690e-01	ci right 7.110670e-01	k: 35354	n:50000
RIN3   50000 perm   13 sec   (3973 perm/sec)   p_kst 7.070800e-01   p_cons 1.348000e-02   p_joint 5.196000e-02

Joint ci ratio: 6.292522e-02	ci left: 5.883519e-02	ci right 6.267410e-02	k: 3644	n:60000
Cons ci ratio: 1.375776e-01	ci left: 1.243084e-02	ci right 1.428334e-02	k: 800	n:60000
KS ci ratio: 9.889885e-03	ci left: 7.200360e-01	ci right 7.272091e-01	k: 43418	n:60000
RIN3   60000 perm   15 sec   (3890 perm/sec)   p_kst 7.236333e-01   p_cons 1.333333e-02   p_joint 6.073333e-02

Joint ci ratio: 6.178872e-02	ci left: 5.268896e-02	ci right 5.606239e-02	k: 3805	n:70000
Cons ci ratio: 1.260460e-01	ci left: 1.276889e-02	ci right 1.450034e-02	k: 953	n:70000
KS ci ratio: 9.193659e-03	ci left: 7.186648e-01	ci right 7.253168e-01	k: 50540	n:70000
RIN3   70000 perm   18 sec   (3811 perm/sec)   p_kst 7.220000e-01   p_cons 1.361429e-02   p_joint 5.435714e-02

Joint ci ratio: 5.805055e-02	ci left: 5.235745e-02	ci right 5.550000e-02	k: 4313	n:80000
Cons ci ratio: 1.178662e-01	ci left: 1.283310e-02	ci right 1.445246e-02	k: 1090	n:80000
KS ci ratio: 8.597477e-03	ci left: 7.189941e-01	ci right 7.252148e-01	k: 57769	n:80000
RIN3   80000 perm   21 sec   (3745 perm/sec)   p_kst 7.221125e-01   p_cons 1.362500e-02   p_joint 5.391250e-02

Joint ci ratio: 5.177523e-02	ci left: 5.832538e-02	ci right 6.143640e-02	k: 5388	n:90000
Cons ci ratio: 1.113729e-01	ci left: 1.282104e-02	ci right 1.434389e-02	k: 1221	n:90000
KS ci ratio: 8.126011e-03	ci left: 7.181686e-01	ci right 7.240393e-01	k: 64900	n:90000
RIN3   90000 perm   24 sec   (3681 perm/sec)   p_kst 7.211111e-01   p_cons 1.356667e-02   p_joint 5.986667e-02

Joint ci ratio: 5.171709e-02	ci left: 5.292319e-02	ci right 5.574273e-02	k: 5432	n:100000
Cons ci ratio: 1.060056e-01	ci left: 1.277440e-02	ci right 1.421402e-02	k: 1348	n:100000
KS ci ratio: 7.832776e-03	ci left: 7.118500e-01	ci right 7.174576e-01	k: 71466	n:100000
RIN3   100000 perm   28 sec   (3619 perm/sec)   p_kst 7.146600e-01   p_cons 1.348000e-02   p_joint 5.432000e-02

Joint ci ratio: 4.211788e-02	ci left: 7.146044e-02	ci right 7.454393e-02	k: 8029	n:110000
Cons ci ratio: 9.806460e-02	ci left: 1.361555e-02	ci right 1.502841e-02	k: 1574	n:110000
KS ci ratio: 7.473856e-03	ci left: 7.116749e-01	ci right 7.170229e-01	k: 78579	n:110000
RIN3   110000 perm   31 sec   (3559 perm/sec)   p_kst 7.143545e-01   p_cons 1.430909e-02   p_joint 7.299091e-02

Outputting figure to mutsig2_images.part000000000147/RIN3.7_2998_110000_0.71435_0.014309_0.072991.png
                gene_name: RIN3
               theta_stop: 0.098 
                    nperm: 110000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.014 
      ci_cons_bounds_left: 0.014 
     ci_cons_bounds_right: 0.015 
                  p_joint: 0.073 
     ci_joint_bounds_left: 0.071 
    ci_joint_bounds_right: 0.075 

Current progress: 14 percent done.
RLIM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.116072e-02	ci left: 2.244469e-01	ci right 2.411090e-01	k: 2327	n:10000
Cons ci ratio: 2.658081e-02	ci left: 6.757928e-01	ci right 6.940994e-01	k: 6850	n:10000
KS ci ratio: 1.116124e-01	ci left: 1.036391e-01	ci right 1.159892e-01	k: 1097	n:10000
RLIM   10000 perm   2 sec   (5336 perm/sec)   p_kst 1.097000e-01   p_cons 6.850000e-01   p_joint 2.327000e-01

Joint ci ratio: 5.215381e-02	ci left: 2.144731e-01	ci right 2.260084e-01	k: 4404	n:20000
Cons ci ratio: 1.894866e-02	ci left: 6.749921e-01	ci right 6.879551e-01	k: 13630	n:20000
KS ci ratio: 7.832365e-02	ci left: 1.069239e-01	ci right 1.156895e-01	k: 2225	n:20000
RLIM   20000 perm   4 sec   (4844 perm/sec)   p_kst 1.112500e-01   p_cons 6.815000e-01   p_joint 2.202000e-01

Outputting figure to mutsig2_images.part000000000147/RLIM.5_1887_20000_0.11125_0.6815_0.2202.png
                gene_name: RLIM
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 16 percent done.
RNF111
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.331969e-02	ci left: 7.298693e-01	ci right 7.471916e-01	k: 7386	n:10000
Cons ci ratio: 3.580541e-02	ci left: 5.352782e-01	ci right 5.548955e-01	k: 5451	n:10000
KS ci ratio: 2.950589e-02	ci left: 6.287933e-01	ci right 6.477261e-01	k: 6383	n:10000
RNF111   10000 perm   2 sec   (4486 perm/sec)   p_kst 6.383000e-01   p_cons 5.451000e-01   p_joint 7.386000e-01

Outputting figure to mutsig2_images.part000000000147/RNF111.5_3013_10000_0.6383_0.5451_0.7386.png
                gene_name: RNF111
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 19 percent done.
RINT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.779877e-02	ci left: 1.588536e-01	ci right 1.735414e-01	k: 1661	n:10000
Cons ci ratio: 5.190602e-02	ci left: 3.536657e-01	ci right 3.726141e-01	k: 3631	n:10000
KS ci ratio: 1.038522e-01	ci left: 1.181869e-01	ci right 1.312326e-01	k: 1246	n:10000
RINT1   10000 perm   2 sec   (5262 perm/sec)   p_kst 1.246000e-01   p_cons 3.631000e-01   p_joint 1.661000e-01

Joint ci ratio: 6.000629e-02	ci left: 1.705470e-01	ci right 1.811475e-01	k: 3516	n:20000
Cons ci ratio: 3.700238e-02	ci left: 3.527459e-01	ci right 3.660950e-01	k: 7188	n:20000
KS ci ratio: 7.463747e-02	ci left: 1.166581e-01	ci right 1.257524e-01	k: 2423	n:20000
RINT1   20000 perm   4 sec   (4740 perm/sec)   p_kst 1.211500e-01   p_cons 3.594000e-01   p_joint 1.758000e-01

Outputting figure to mutsig2_images.part000000000147/RINT1.4_2439_20000_0.12115_0.3594_0.1758.png
                gene_name: RINT1
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 21 percent done.
RIT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.650079e-02	ci left: 6.771026e-01	ci right 6.953888e-01	k: 6863	n:10000
Cons ci ratio: 6.161973e-02	ci left: 2.791374e-01	ci right 2.969862e-01	k: 2880	n:10000
KS ci ratio: 2.297566e-02	ci left: 7.356292e-01	ci right 7.528283e-01	k: 7443	n:10000
RIT2   10000 perm   1 sec   (6667 perm/sec)   p_kst 7.443000e-01   p_cons 2.880000e-01   p_joint 6.863000e-01

Outputting figure to mutsig2_images.part000000000147/RIT2.4_674_10000_0.7443_0.288_0.6863.png
                gene_name: RIT2
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 23 percent done.
RIC8B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.274838e-02	ci left: 5.791816e-01	ci right 5.985666e-01	k: 5889	n:10000
KS ci ratio: 2.423247e-02	ci left: 7.146195e-01	ci right 7.322502e-01	k: 7235	n:10000
RIC8B   10000 perm   2 sec   (6217 perm/sec)   p_kst 7.235000e-01   p_cons 5.889000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000147/RIC8B.3_1599_10000_0.7235_0.5889_1.png
                gene_name: RIC8B
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 26 percent done.
RICTOR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.818042e-02	ci left: 8.153757e-01	ci right 8.304357e-01	k: 8230	n:10000
Cons ci ratio: 4.240530e-02	ci left: 4.508931e-01	ci right 4.705298e-01	k: 4607	n:10000
KS ci ratio: 2.240249e-02	ci left: 7.452334e-01	ci right 7.622186e-01	k: 7538	n:10000
RICTOR   10000 perm   3 sec   (3901 perm/sec)   p_kst 7.538000e-01   p_cons 4.607000e-01   p_joint 8.230000e-01

Outputting figure to mutsig2_images.part000000000147/RICTOR.3_5279_10000_0.7538_0.4607_0.823.png
                gene_name: RICTOR
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 28 percent done.
RIMKLB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.027713e-02	ci left: 6.167323e-01	ci right 6.357941e-01	k: 6263	n:10000
KS ci ratio: 3.613873e-02	ci left: 5.306718e-01	ci right 5.503046e-01	k: 5405	n:10000
RIMKLB   10000 perm   2 sec   (5646 perm/sec)   p_kst 5.405000e-01   p_cons 6.263000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000147/RIMKLB.3_1181_10000_0.5405_0.6263_1.png
                gene_name: RIMKLB
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 30 percent done.
RLTPR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.769452e-02	ci left: 5.096532e-01	ci right 5.293355e-01	k: 5195	n:10000
Cons ci ratio: 3.400154e-02	ci left: 5.608290e-01	ci right 5.803299e-01	k: 5706	n:10000
KS ci ratio: 4.856532e-02	ci left: 3.848032e-01	ci right 4.040584e-01	k: 3944	n:10000
RLTPR   10000 perm   2 sec   (4392 perm/sec)   p_kst 3.944000e-01   p_cons 5.706000e-01   p_joint 5.195000e-01

Outputting figure to mutsig2_images.part000000000147/RLTPR.3_4460_10000_0.3944_0.5706_0.5195.png
                gene_name: RLTPR
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 33 percent done.
RMND5A
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.669586e-03	ci left: 9.766355e-01	ci right 9.822803e-01	k: 9796	n:10000
KS ci ratio: 2.962739e-02	ci left: 6.268832e-01	ci right 6.458373e-01	k: 6364	n:10000
RMND5A   10000 perm   2 sec   (6528 perm/sec)   p_kst 6.364000e-01   p_cons 9.796000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000147/RMND5A.2_1212_10000_0.6364_0.9796_1.png
                gene_name: RMND5A
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 35 percent done.
RNASE10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.367280e-02	ci left: 4.363242e-01	ci right 4.559072e-01	k: 4461	n:10000
KS ci ratio: 3.898779e-03	ci left: 9.881795e-01	ci right 9.921271e-01	k: 9903	n:10000
RNASE10   10000 perm   1 sec   (6717 perm/sec)   p_kst 9.903000e-01   p_cons 4.461000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000147/RNASE10.3_654_10000_0.9903_0.4461_1.png
                gene_name: RNASE10
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 37 percent done.
RNASE13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.040908e-01	ci left: 1.176982e-01	ci right 1.307216e-01	k: 1241	n:10000
Cons ci ratio: 3.733977e-01	ci left: 8.867630e-03	ci right 1.302464e-02	k: 108	n:10000
KS ci ratio: 1.635946e-02	ci left: 8.445820e-01	ci right 8.586125e-01	k: 8517	n:10000
RNASE13   10000 perm   2 sec   (6244 perm/sec)   p_kst 8.517000e-01   p_cons 1.080000e-02   p_joint 1.241000e-01

Joint ci ratio: 5.815862e-02	ci left: 1.796891e-01	ci right 1.905026e-01	k: 3701	n:20000
Cons ci ratio: 2.616225e-01	ci left: 9.647644e-03	ci right 1.259707e-02	k: 221	n:20000
KS ci ratio: 1.152821e-02	ci left: 8.475600e-01	ci right 8.574373e-01	k: 17051	n:20000
RNASE13   20000 perm   4 sec   (5528 perm/sec)   p_kst 8.525500e-01   p_cons 1.105000e-02   p_joint 1.850500e-01

Joint ci ratio: 5.430123e-02	ci left: 1.439663e-01	ci right 1.520353e-01	k: 4439	n:30000
Cons ci ratio: 2.159224e-01	ci left: 9.692830e-03	ci right 1.206999e-02	k: 325	n:30000
KS ci ratio: 9.515245e-03	ci left: 8.457067e-01	ci right 8.538254e-01	k: 25494	n:30000
RNASE13   30000 perm   6 sec   (5227 perm/sec)   p_kst 8.498000e-01   p_cons 1.083333e-02   p_joint 1.479667e-01

Joint ci ratio: 4.729391e-02	ci left: 1.430975e-01	ci right 1.500539e-01	k: 5862	n:40000
Cons ci ratio: 1.907267e-01	ci left: 9.452805e-03	ci right 1.146921e-02	k: 417	n:40000
KS ci ratio: 8.316068e-03	ci left: 8.438887e-01	ci right 8.509607e-01	k: 33898	n:40000
RNASE13   40000 perm   8 sec   (5063 perm/sec)   p_kst 8.474500e-01   p_cons 1.042500e-02   p_joint 1.465500e-01

Joint ci ratio: 4.027272e-02	ci left: 1.560823e-01	ci right 1.625173e-01	k: 7964	n:50000
Cons ci ratio: 1.359325e-01	ci left: 1.524690e-02	ci right 1.748976e-02	k: 817	n:50000
KS ci ratio: 7.442387e-03	ci left: 8.441170e-01	ci right 8.504426e-01	k: 42365	n:50000
RNASE13   50000 perm   10 sec   (4933 perm/sec)   p_kst 8.473000e-01   p_cons 1.634000e-02   p_joint 1.592800e-01

Joint ci ratio: 3.668625e-02	ci left: 1.569259e-01	ci right 1.628071e-01	k: 9591	n:60000
Cons ci ratio: 1.237434e-01	ci left: 1.543117e-02	ci right 1.748266e-02	k: 986	n:60000
KS ci ratio: 6.816213e-03	ci left: 8.435402e-01	ci right 8.493262e-01	k: 50787	n:60000
RNASE13   60000 perm   12 sec   (4815 perm/sec)   p_kst 8.464500e-01   p_cons 1.643333e-02   p_joint 1.598500e-01

Joint ci ratio: 2.896650e-02	ci left: 2.043589e-01	ci right 2.103797e-01	k: 14515	n:70000
Cons ci ratio: 1.149966e-01	ci left: 1.538878e-02	ci right 1.728019e-02	k: 1142	n:70000
KS ci ratio: 6.296866e-03	ci left: 8.443261e-01	ci right 8.496737e-01	k: 59291	n:70000
RNASE13   70000 perm   15 sec   (4711 perm/sec)   p_kst 8.470143e-01   p_cons 1.631429e-02   p_joint 2.073571e-01

Joint ci ratio: 2.142645e-02	ci left: 2.918037e-01	ci right 2.981362e-01	k: 23597	n:80000
Cons ci ratio: 1.079180e-01	ci left: 1.534868e-02	ci right 1.711165e-02	k: 1297	n:80000
KS ci ratio: 5.961062e-03	ci left: 8.413536e-01	ci right 8.463964e-01	k: 67511	n:80000
RNASE13   80000 perm   17 sec   (4633 perm/sec)   p_kst 8.438875e-01   p_cons 1.621250e-02   p_joint 2.949625e-01

Joint ci ratio: 2.514079e-02	ci left: 2.099971e-01	ci right 2.153548e-01	k: 19140	n:90000
Cons ci ratio: 1.011580e-01	ci left: 1.558029e-02	ci right 1.725109e-02	k: 1476	n:90000
KS ci ratio: 5.616550e-03	ci left: 8.416687e-01	ci right 8.464203e-01	k: 75965	n:90000
RNASE13   90000 perm   20 sec   (4514 perm/sec)   p_kst 8.440556e-01   p_cons 1.640000e-02   p_joint 2.126667e-01

Joint ci ratio: 2.382773e-02	ci left: 2.104558e-01	ci right 2.155409e-01	k: 21299	n:100000
Cons ci ratio: 9.546875e-02	ci left: 1.578785e-02	ci right 1.738036e-02	k: 1657	n:100000
KS ci ratio: 5.322562e-03	ci left: 8.420781e-01	ci right 8.465820e-01	k: 84434	n:100000
RNASE13   100000 perm   23 sec   (4396 perm/sec)   p_kst 8.443400e-01   p_cons 1.657000e-02   p_joint 2.129900e-01

Outputting figure to mutsig2_images.part000000000147/RNASE13.3_475_100000_0.84434_0.01657_0.21299.png
                gene_name: RNASE13
               theta_stop: 0.095 
                    nperm: 100000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.017 
      ci_cons_bounds_left: 0.016 
     ci_cons_bounds_right: 0.017 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 40 percent done.
RNASE3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.542886e-02	ci left: 3.240605e-01	ci right 3.426367e-01	k: 3333	n:10000
Cons ci ratio: 2.641468e-02	ci left: 6.785132e-01	ci right 6.967774e-01	k: 6877	n:10000
KS ci ratio: 8.692213e-02	ci left: 1.616039e-01	ci right 1.763894e-01	k: 1689	n:10000
RNASE3   10000 perm   1 sec   (6979 perm/sec)   p_kst 1.689000e-01   p_cons 6.877000e-01   p_joint 3.333000e-01

Outputting figure to mutsig2_images.part000000000147/RNASE3.3_487_10000_0.1689_0.6877_0.3333.png
                gene_name: RNASE3
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 42 percent done.
RNF10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.822979e-03	ci left: 9.754639e-01	ci right 9.812528e-01	k: 9785	n:10000
Cons ci ratio: 9.490867e-03	ci left: 9.400391e-01	ci right 9.490997e-01	k: 9447	n:10000
KS ci ratio: 3.324445e-02	ci left: 5.718590e-01	ci right 5.912935e-01	k: 5816	n:10000
RNF10   10000 perm   2 sec   (5316 perm/sec)   p_kst 5.816000e-01   p_cons 9.447000e-01   p_joint 9.785000e-01

Outputting figure to mutsig2_images.part000000000147/RNF10.3_2504_10000_0.5816_0.9447_0.9785.png
                gene_name: RNF10
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 44 percent done.
RNF133
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.350785e-01	ci left: 1.123901e-02	ci right 1.585081e-02	k: 134	n:10000
Cons ci ratio: 1.137775e-01	ci left: 1.000319e-01	ci right 1.121987e-01	k: 1060	n:10000
KS ci ratio: 3.751414e-01	ci left: 8.776964e-03	ci right 1.291541e-02	k: 107	n:10000
RNF133   10000 perm   2 sec   (5911 perm/sec)   p_kst 1.070000e-02   p_cons 1.060000e-01   p_joint 1.340000e-02

Joint ci ratio: 2.143265e-01	ci left: 1.468536e-02	ci right 1.825721e-02	k: 328	n:20000
Cons ci ratio: 7.986614e-02	ci left: 1.031904e-01	ci right 1.118241e-01	k: 2149	n:20000
KS ci ratio: 2.494107e-01	ci left: 1.067791e-02	ci right 1.376634e-02	k: 243	n:20000
RNF133   20000 perm   4 sec   (5139 perm/sec)   p_kst 1.215000e-02   p_cons 1.074500e-01   p_joint 1.640000e-02

Joint ci ratio: 1.437114e-01	ci left: 2.245846e-02	ci right 2.596784e-02	k: 725	n:30000
Cons ci ratio: 6.659580e-02	ci left: 1.000749e-01	ci right 1.070021e-01	k: 3105	n:30000
KS ci ratio: 2.123298e-01	ci left: 1.004002e-02	ci right 1.245603e-02	k: 336	n:30000
RNF133   30000 perm   6 sec   (4886 perm/sec)   p_kst 1.120000e-02   p_cons 1.035000e-01   p_joint 2.416667e-02

Joint ci ratio: 1.592312e-01	ci left: 1.373554e-02	ci right 1.613563e-02	k: 596	n:40000
Cons ci ratio: 5.783234e-02	ci left: 1.000377e-01	ci right 1.060201e-01	k: 4120	n:40000
KS ci ratio: 1.856325e-01	ci left: 1.000097e-02	ci right 1.207093e-02	k: 440	n:40000
RNF133   40000 perm   8 sec   (4721 perm/sec)   p_kst 1.100000e-02   p_cons 1.030000e-01   p_joint 1.490000e-02

Joint ci ratio: 1.359325e-01	ci left: 1.524690e-02	ci right 1.748976e-02	k: 817	n:50000
Cons ci ratio: 5.176193e-02	ci left: 1.002302e-01	ci right 1.055760e-01	k: 5144	n:50000
KS ci ratio: 1.619621e-01	ci left: 1.064149e-02	ci right 1.253585e-02	k: 578	n:50000
RNF133   50000 perm   11 sec   (4590 perm/sec)   p_kst 1.156000e-02   p_cons 1.028800e-01   p_joint 1.634000e-02

Joint ci ratio: 1.540002e-01	ci left: 9.860094e-03	ci right 1.152108e-02	k: 640	n:60000
Cons ci ratio: 4.578588e-02	ci left: 1.063685e-01	ci right 1.113694e-01	k: 6531	n:60000
KS ci ratio: 1.474006e-01	ci left: 1.079069e-02	ci right 1.252369e-02	k: 698	n:60000
RNF133   60000 perm   13 sec   (4474 perm/sec)   p_kst 1.163333e-02   p_cons 1.088500e-01   p_joint 1.066667e-02

Joint ci ratio: 1.283149e-01	ci left: 1.231227e-02	ci right 1.401415e-02	k: 920	n:70000
Cons ci ratio: 4.239785e-02	ci left: 1.065165e-01	ci right 1.111445e-01	k: 7617	n:70000
KS ci ratio: 1.358360e-01	ci left: 1.095797e-02	ci right 1.256860e-02	k: 822	n:70000
RNF133   70000 perm   16 sec   (4366 perm/sec)   p_kst 1.174286e-02   p_cons 1.088143e-01   p_joint 1.314286e-02

Joint ci ratio: 1.219542e-01	ci left: 1.197189e-02	ci right 1.353875e-02	k: 1019	n:80000
Cons ci ratio: 3.950772e-02	ci left: 1.074060e-01	ci right 1.117473e-01	k: 8765	n:80000
KS ci ratio: 1.257553e-01	ci left: 1.124485e-02	ci right 1.276584e-02	k: 959	n:80000
RNF133   80000 perm   19 sec   (4268 perm/sec)   p_kst 1.198750e-02   p_cons 1.095625e-01   p_joint 1.273750e-02

Joint ci ratio: 1.181763e-01	ci left: 1.136355e-02	ci right 1.280149e-02	k: 1086	n:90000
Cons ci ratio: 3.720114e-02	ci left: 1.077755e-01	ci right 1.118719e-01	k: 9883	n:90000
KS ci ratio: 1.192921e-01	ci left: 1.114786e-02	ci right 1.257276e-02	k: 1066	n:90000
RNF133   90000 perm   22 sec   (4183 perm/sec)   p_kst 1.184444e-02   p_cons 1.098111e-01   p_joint 1.206667e-02

Joint ci ratio: 1.199331e-01	ci left: 9.935686e-03	ci right 1.121294e-02	k: 1056	n:100000
Cons ci ratio: 3.531600e-02	ci left: 1.077495e-01	ci right 1.116331e-01	k: 10968	n:100000
KS ci ratio: 1.126217e-01	ci left: 1.129543e-02	ci right 1.265310e-02	k: 1196	n:100000
RNF133   100000 perm   24 sec   (4099 perm/sec)   p_kst 1.196000e-02   p_cons 1.096800e-01   p_joint 1.056000e-02

Joint ci ratio: 1.267653e-01	ci left: 8.071582e-03	ci right 9.172743e-03	k: 947	n:110000
Cons ci ratio: 3.370844e-02	ci left: 1.076334e-01	ci right 1.113327e-01	k: 12042	n:110000
KS ci ratio: 1.074095e-01	ci left: 1.132064e-02	ci right 1.261438e-02	k: 1315	n:110000
RNF133   110000 perm   27 sec   (4017 perm/sec)   p_kst 1.195455e-02   p_cons 1.094727e-01   p_joint 8.609091e-03

Joint ci ratio: 1.265425e-01	ci left: 7.431071e-03	ci right 8.442927e-03	k: 951	n:120000
Cons ci ratio: 3.230351e-02	ci left: 1.075317e-01	ci right 1.110706e-01	k: 13115	n:120000
KS ci ratio: 1.032612e-01	ci left: 1.125352e-02	ci right 1.248690e-02	k: 1423	n:120000
RNF133   120000 perm   30 sec   (3943 perm/sec)   p_kst 1.185833e-02   p_cons 1.092917e-01   p_joint 7.925000e-03

Joint ci ratio: 1.121660e-01	ci left: 8.785340e-03	ci right 9.836722e-03	k: 1209	n:130000
Cons ci ratio: 3.104603e-02	ci left: 1.075400e-01	ci right 1.109390e-01	k: 14200	n:130000
KS ci ratio: 9.992272e-02	ci left: 1.111502e-02	ci right 1.229152e-02	k: 1520	n:130000
RNF133   130000 perm   34 sec   (3860 perm/sec)   p_kst 1.169231e-02   p_cons 1.092308e-01   p_joint 9.300000e-03

Joint ci ratio: 9.469218e-02	ci left: 1.151989e-02	ci right 1.267188e-02	k: 1692	n:140000
Cons ci ratio: 2.996555e-02	ci left: 1.072870e-01	ci right 1.105578e-01	k: 15248	n:140000
KS ci ratio: 9.655673e-02	ci left: 1.107356e-02	ci right 1.220395e-02	k: 1628	n:140000
RNF133   140000 perm   37 sec   (3789 perm/sec)   p_kst 1.162857e-02   p_cons 1.089143e-01   p_joint 1.208571e-02

Outputting figure to mutsig2_images.part000000000147/RNF133.3_1135_140000_0.011629_0.10891_0.012086.png
                gene_name: RNF133
               theta_stop: 0.097 
                    nperm: 140000 
                     p_ks: 0.012 
        ci_ks_bounds_left: 0.011 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.012 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.013 

Current progress: 47 percent done.
RIC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.169719e-02	ci left: 9.127588e-01	ci right 9.235961e-01	k: 9183	n:10000
Cons ci ratio: 1.917731e-02	ci left: 7.990245e-01	ci right 8.145964e-01	k: 8069	n:10000
KS ci ratio: 1.501474e-02	ci left: 8.653957e-01	ci right 8.785868e-01	k: 8721	n:10000
RIC3   10000 perm   2 sec   (6242 perm/sec)   p_kst 8.721000e-01   p_cons 8.069000e-01   p_joint 9.183000e-01

Outputting figure to mutsig2_images.part000000000147/RIC3.2_1131_10000_0.8721_0.8069_0.9183.png
                gene_name: RIC3
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 49 percent done.
RIC8A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.763111e-01	ci left: 4.293441e-02	ci right 5.133194e-02	k: 470	n:10000
Cons ci ratio: 1.297800e-01	ci left: 7.814990e-02	ci right 8.909410e-02	k: 835	n:10000
KS ci ratio: 1.328380e-01	ci left: 7.475563e-02	ci right 8.549047e-02	k: 800	n:10000
RIC8A   10000 perm   2 sec   (5909 perm/sec)   p_kst 8.000000e-02   p_cons 8.350000e-02   p_joint 4.700000e-02

Joint ci ratio: 1.739927e-01	ci left: 2.259326e-02	ci right 2.694640e-02	k: 494	n:20000
Cons ci ratio: 9.076681e-02	ci left: 8.141531e-02	ci right 8.920575e-02	k: 1705	n:20000
KS ci ratio: 9.289637e-02	ci left: 7.793991e-02	ci right 8.558220e-02	k: 1634	n:20000
RIC8A   20000 perm   4 sec   (5169 perm/sec)   p_kst 8.170000e-02   p_cons 8.525000e-02   p_joint 2.470000e-02

Joint ci ratio: 8.952635e-02	ci left: 5.737130e-02	ci right 6.278095e-02	k: 1801	n:30000
Cons ci ratio: 7.362481e-02	ci left: 8.314593e-02	ci right 8.953444e-02	k: 2589	n:30000
KS ci ratio: 7.633414e-02	ci left: 7.770740e-02	ci right 8.390740e-02	k: 2423	n:30000
RIC8A   30000 perm   6 sec   (4876 perm/sec)   p_kst 8.076667e-02   p_cons 8.630000e-02   p_joint 6.003333e-02

Outputting figure to mutsig2_images.part000000000147/RIC8A.2_1654_30000_0.080767_0.0863_0.060033.png
                gene_name: RIC8A
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.081 
        ci_ks_bounds_left: 0.078 
       ci_ks_bounds_right: 0.084 
                   p_cons: 0.086 
      ci_cons_bounds_left: 0.083 
     ci_cons_bounds_right: 0.090 
                  p_joint: 0.060 
     ci_joint_bounds_left: 0.057 
    ci_joint_bounds_right: 0.063 

Current progress: 51 percent done.
RICH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.546029e-02	ci left: 5.400858e-01	ci right 5.596852e-01	k: 5499	n:10000
Cons ci ratio: 1.127940e-02	ci left: 9.182193e-01	ci right 9.287325e-01	k: 9236	n:10000
KS ci ratio: 4.806084e-02	ci left: 3.897810e-01	ci right 4.090776e-01	k: 3994	n:10000
RICH2   10000 perm   2 sec   (5684 perm/sec)   p_kst 3.994000e-01   p_cons 9.236000e-01   p_joint 5.499000e-01

Outputting figure to mutsig2_images.part000000000147/RICH2.2_2541_10000_0.3994_0.9236_0.5499.png
                gene_name: RICH2
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 53 percent done.
RIMKLA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.240467e-02	ci left: 5.842987e-01	ci right 6.036465e-01	k: 5940	n:10000
Cons ci ratio: 1.583164e-02	ci left: 8.528403e-01	ci right 8.665494e-01	k: 8598	n:10000
KS ci ratio: 5.939737e-02	ci left: 2.942987e-01	ci right 3.124160e-01	k: 3033	n:10000
RIMKLA   10000 perm   2 sec   (6395 perm/sec)   p_kst 3.033000e-01   p_cons 8.598000e-01   p_joint 5.940000e-01

Outputting figure to mutsig2_images.part000000000147/RIMKLA.2_1196_10000_0.3033_0.8598_0.594.png
                gene_name: RIMKLA
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 56 percent done.
RIMS4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.340178e-02	ci left: 5.695523e-01	ci right 5.890015e-01	k: 5793	n:10000
Cons ci ratio: 3.150556e-02	ci left: 5.978492e-01	ci right 6.170882e-01	k: 6075	n:10000
KS ci ratio: 3.404318e-02	ci left: 5.602275e-01	ci right 5.797317e-01	k: 5700	n:10000
RIMS4   10000 perm   1 sec   (6951 perm/sec)   p_kst 5.700000e-01   p_cons 6.075000e-01   p_joint 5.793000e-01

Outputting figure to mutsig2_images.part000000000147/RIMS4.2_834_10000_0.57_0.6075_0.5793.png
                gene_name: RIMS4
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 58 percent done.
RIN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.218414e-02	ci left: 4.534885e-01	ci right 4.731329e-01	k: 4633	n:10000
Cons ci ratio: 3.080322e-02	ci left: 6.085946e-01	ci right 6.277365e-01	k: 6182	n:10000
KS ci ratio: 1.307207e-01	ci left: 7.708281e-02	ci right 8.796184e-02	k: 824	n:10000
RIN2   10000 perm   2 sec   (5425 perm/sec)   p_kst 8.240000e-02   p_cons 6.182000e-01   p_joint 4.633000e-01

Joint ci ratio: 3.056419e-02	ci left: 4.443360e-01	ci right 4.581782e-01	k: 9025	n:20000
Cons ci ratio: 2.185152e-02	ci left: 6.099203e-01	ci right 6.234458e-01	k: 12334	n:20000
KS ci ratio: 9.302034e-02	ci left: 7.774418e-02	ci right 8.537799e-02	k: 1630	n:20000
RIN2   20000 perm   4 sec   (4716 perm/sec)   p_kst 8.150000e-02   p_cons 6.167000e-01   p_joint 4.512500e-01

Outputting figure to mutsig2_images.part000000000147/RIN2.2_2732_20000_0.0815_0.6167_0.45125.png
                gene_name: RIN2
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.082 
        ci_ks_bounds_left: 0.078 
       ci_ks_bounds_right: 0.085 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 60 percent done.
RIPK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.437769e-02	ci left: 4.284445e-01	ci right 4.479915e-01	k: 4382	n:10000
KS ci ratio: 3.470749e-02	ci left: 5.507057e-01	ci right 5.702590e-01	k: 5605	n:10000
RIPK2   10000 perm   2 sec   (6230 perm/sec)   p_kst 5.605000e-01   p_cons 4.382000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000147/RIPK2.2_1667_10000_0.5605_0.4382_1.png
                gene_name: RIPK2
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 63 percent done.
RLF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.130045e-02	ci left: 2.237558e-01	ci right 2.404006e-01	k: 2320	n:10000
Cons ci ratio: 7.616684e-02	ci left: 2.013622e-01	ci right 2.174074e-01	k: 2093	n:10000
KS ci ratio: 7.552859e-02	ci left: 2.041225e-01	ci right 2.202455e-01	k: 2121	n:10000
RLF   10000 perm   2 sec   (4300 perm/sec)   p_kst 2.121000e-01   p_cons 2.093000e-01   p_joint 2.320000e-01

Outputting figure to mutsig2_images.part000000000147/RLF.2_5777_10000_0.2121_0.2093_0.232.png
                gene_name: RLF
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 65 percent done.
RLN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.987073e-02	ci left: 3.722635e-01	ci right 3.914054e-01	k: 3818	n:10000
Cons ci ratio: 5.114064e-02	ci left: 3.605262e-01	ci right 3.795496e-01	k: 3700	n:10000
KS ci ratio: 9.015130e-02	ci left: 1.517848e-01	ci right 1.662144e-01	k: 1589	n:10000
RLN2   10000 perm   1 sec   (7217 perm/sec)   p_kst 1.589000e-01   p_cons 3.700000e-01   p_joint 3.818000e-01

Outputting figure to mutsig2_images.part000000000147/RLN2.2_671_10000_0.1589_0.37_0.3818.png
                gene_name: RLN2
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 67 percent done.
RLN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.473093e-02	ci left: 8.696873e-01	ci right 8.826927e-01	k: 8763	n:10000
Cons ci ratio: 1.410615e-02	ci left: 8.789942e-01	ci right 8.915804e-01	k: 8854	n:10000
KS ci ratio: 2.467494e-02	ci left: 7.072516e-01	ci right 7.250223e-01	k: 7162	n:10000
RLN3   10000 perm   2 sec   (6529 perm/sec)   p_kst 7.162000e-01   p_cons 8.854000e-01   p_joint 8.763000e-01

Outputting figure to mutsig2_images.part000000000147/RLN3.2_437_10000_0.7162_0.8854_0.8763.png
                gene_name: RLN3
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 70 percent done.
RMND1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.103201e-02	ci left: 6.050792e-01	ci right 6.242539e-01	k: 6147	n:10000
Cons ci ratio: 3.244499e-02	ci left: 5.836966e-01	ci right 6.030490e-01	k: 5934	n:10000
KS ci ratio: 6.216491e-02	ci left: 2.755719e-01	ci right 2.933539e-01	k: 2844	n:10000
RMND1   10000 perm   2 sec   (6326 perm/sec)   p_kst 2.844000e-01   p_cons 5.934000e-01   p_joint 6.147000e-01

Outputting figure to mutsig2_images.part000000000147/RMND1.2_1394_10000_0.2844_0.5934_0.6147.png
                gene_name: RMND1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.62 

Current progress: 72 percent done.
RNASE11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.841078e-02	ci left: 8.116160e-01	ci right 8.267975e-01	k: 8193	n:10000
KS ci ratio: 2.573434e-02	ci left: 6.897011e-01	ci right 7.077830e-01	k: 6988	n:10000
RNASE11   10000 perm   1 sec   (7025 perm/sec)   p_kst 6.988000e-01   p_cons 8.193000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000147/RNASE11.2_604_10000_0.6988_0.8193_1.png
                gene_name: RNASE11
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 74 percent done.
RNASE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.329947e-03	ci left: 9.625746e-01	ci right 9.697505e-01	k: 9663	n:10000
Cons ci ratio: 4.689887e-02	ci left: 4.015330e-01	ci right 4.209187e-01	k: 4112	n:10000
KS ci ratio: 5.402496e-02	ci left: 3.354805e-01	ci right 3.542099e-01	k: 3448	n:10000
RNASE2   10000 perm   1 sec   (6756 perm/sec)   p_kst 3.448000e-01   p_cons 4.112000e-01   p_joint 9.663000e-01

Outputting figure to mutsig2_images.part000000000147/RNASE2.2_490_10000_0.3448_0.4112_0.9663.png
                gene_name: RNASE2
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 77 percent done.
RNASEH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.820347e-02	ci left: 5.029509e-01	ci right 5.226417e-01	k: 5128	n:10000
KS ci ratio: 2.524022e-02	ci left: 6.978692e-01	ci right 7.158101e-01	k: 7069	n:10000
RNASEH1   10000 perm   2 sec   (5763 perm/sec)   p_kst 7.069000e-01   p_cons 5.128000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000147/RNASEH1.2_893_10000_0.7069_0.5128_1.png
                gene_name: RNASEH1
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
RNASEL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.457605e-02	ci left: 1.396231e-01	ci right 1.535834e-01	k: 1465	n:10000
Cons ci ratio: 1.925331e-01	ci left: 3.595770e-02	ci right 4.371330e-02	k: 397	n:10000
KS ci ratio: 3.301279e-02	ci left: 5.752692e-01	ci right 5.946812e-01	k: 5850	n:10000
RNASEL   10000 perm   2 sec   (5451 perm/sec)   p_kst 5.850000e-01   p_cons 3.970000e-02   p_joint 1.465000e-01

Joint ci ratio: 9.664763e-02	ci left: 7.231533e-02	ci right 7.970850e-02	k: 1519	n:20000
Cons ci ratio: 1.276899e-01	ci left: 4.211982e-02	ci right 4.791339e-02	k: 899	n:20000
KS ci ratio: 2.340505e-02	ci left: 5.768816e-01	ci right 5.905940e-01	k: 11675	n:20000
RNASEL   20000 perm   4 sec   (4727 perm/sec)   p_kst 5.837500e-01   p_cons 4.495000e-02   p_joint 7.595000e-02

Joint ci ratio: 8.797837e-02	ci left: 5.932961e-02	ci right 6.482224e-02	k: 1861	n:30000
Cons ci ratio: 1.037372e-01	ci left: 4.307172e-02	ci right 4.781681e-02	k: 1362	n:30000
KS ci ratio: 1.908104e-02	ci left: 5.788988e-01	ci right 5.900848e-01	k: 17535	n:30000
RNASEL   30000 perm   7 sec   (4511 perm/sec)   p_kst 5.845000e-01   p_cons 4.540000e-02   p_joint 6.203333e-02

Joint ci ratio: 8.417825e-02	ci left: 4.925621e-02	ci right 5.360921e-02	k: 2056	n:40000
Cons ci ratio: 8.925785e-02	ci left: 4.394314e-02	ci right 4.807309e-02	k: 1839	n:40000
KS ci ratio: 1.651717e-02	ci left: 5.798774e-01	ci right 5.895603e-01	k: 23389	n:40000
RNASEL   40000 perm   9 sec   (4377 perm/sec)   p_kst 5.847250e-01   p_cons 4.597500e-02   p_joint 5.140000e-02

Outputting figure to mutsig2_images.part000000000147/RNASEL.2_2250_40000_0.58473_0.045975_0.0514.png
                gene_name: RNASEL
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.046 
      ci_cons_bounds_left: 0.044 
     ci_cons_bounds_right: 0.048 
                  p_joint: 0.051 
     ci_joint_bounds_left: 0.049 
    ci_joint_bounds_right: 0.054 

Current progress: 81 percent done.
RND3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.232375e-02	ci left: 3.499877e-01	ci right 3.688943e-01	k: 3594	n:10000
KS ci ratio: 4.162861e-02	ci left: 4.600779e-01	ci right 4.797396e-01	k: 4699	n:10000
RND3   10000 perm   2 sec   (6662 perm/sec)   p_kst 4.699000e-01   p_cons 3.594000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000147/RND3.2_755_10000_0.4699_0.3594_1.png
                gene_name: RND3
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
RNF103
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.581162e-01	ci left: 5.330545e-02	ci right 6.255418e-02	k: 578	n:10000
Cons ci ratio: 3.220289e-01	ci left: 1.224928e-02	ci right 1.703957e-02	k: 145	n:10000
KS ci ratio: 7.684031e-02	ci left: 1.985040e-01	ci right 2.144674e-01	k: 2064	n:10000
RNF103   10000 perm   2 sec   (5841 perm/sec)   p_kst 2.064000e-01   p_cons 1.450000e-02   p_joint 5.780000e-02

Joint ci ratio: 1.125313e-01	ci left: 5.397247e-02	ci right 6.045701e-02	k: 1143	n:20000
Cons ci ratio: 2.321934e-01	ci left: 1.241764e-02	ci right 1.572585e-02	k: 280	n:20000
KS ci ratio: 5.458489e-02	ci left: 1.993738e-01	ci right 2.106121e-01	k: 4099	n:20000
RNF103   20000 perm   4 sec   (5046 perm/sec)   p_kst 2.049500e-01   p_cons 1.400000e-02   p_joint 5.715000e-02

Joint ci ratio: 8.979171e-02	ci left: 5.704500e-02	ci right 6.244065e-02	k: 1791	n:30000
Cons ci ratio: 1.848616e-01	ci left: 1.340044e-02	ci right 1.616136e-02	k: 442	n:30000
KS ci ratio: 4.447760e-02	ci left: 2.010719e-01	ci right 2.102519e-01	k: 6169	n:30000
RNF103   30000 perm   6 sec   (4779 perm/sec)   p_kst 2.056333e-01   p_cons 1.473333e-02   p_joint 5.970000e-02

Joint ci ratio: 7.761260e-02	ci left: 5.761854e-02	ci right 6.229559e-02	k: 2397	n:40000
Cons ci ratio: 1.599124e-01	ci left: 1.361547e-02	ci right 1.600573e-02	k: 591	n:40000
KS ci ratio: 3.862128e-02	ci left: 2.008294e-01	ci right 2.087635e-01	k: 8191	n:40000
RNF103   40000 perm   9 sec   (4608 perm/sec)   p_kst 2.047750e-01   p_cons 1.477500e-02   p_joint 5.992500e-02

Joint ci ratio: 6.973505e-02	ci left: 5.736344e-02	ci right 6.152789e-02	k: 2971	n:50000
Cons ci ratio: 1.427370e-01	ci left: 1.379841e-02	ci right 1.593845e-02	k: 742	n:50000
KS ci ratio: 3.461838e-02	ci left: 2.005546e-01	ci right 2.076398e-01	k: 10204	n:50000
RNF103   50000 perm   11 sec   (4468 perm/sec)   p_kst 2.040800e-01   p_cons 1.484000e-02   p_joint 5.942000e-02

Joint ci ratio: 6.280606e-02	ci left: 5.904866e-02	ci right 6.289394e-02	k: 3657	n:60000
Cons ci ratio: 1.300492e-01	ci left: 1.394578e-02	ci right 1.590155e-02	k: 894	n:60000
KS ci ratio: 3.153098e-02	ci left: 2.015935e-01	ci right 2.080684e-01	k: 12289	n:60000
RNF103   60000 perm   14 sec   (4358 perm/sec)   p_kst 2.048167e-01   p_cons 1.490000e-02   p_joint 6.095000e-02

Joint ci ratio: 7.981078e-02	ci left: 3.198310e-02	ci right 3.465577e-02	k: 2331	n:70000
Cons ci ratio: 1.222680e-01	ci left: 1.358591e-02	ci right 1.536895e-02	k: 1012	n:70000
KS ci ratio: 2.925405e-02	ci left: 2.011479e-01	ci right 2.071338e-01	k: 14289	n:70000
RNF103   70000 perm   16 sec   (4258 perm/sec)   p_kst 2.041286e-01   p_cons 1.445714e-02   p_joint 3.330000e-02

Joint ci ratio: 7.470179e-02	ci left: 3.203059e-02	ci right 3.452841e-02	k: 2661	n:80000
Cons ci ratio: 1.150139e-01	ci left: 1.348870e-02	ci right 1.514680e-02	k: 1144	n:80000
KS ci ratio: 2.744221e-02	ci left: 2.004287e-01	ci right 2.060179e-01	k: 16257	n:80000
RNF103   80000 perm   19 sec   (4163 perm/sec)   p_kst 2.032125e-01   p_cons 1.430000e-02   p_joint 3.326250e-02

Joint ci ratio: 4.118698e-02	ci left: 8.955794e-02	ci right 9.333511e-02	k: 8229	n:90000
Cons ci ratio: 1.070586e-01	ci left: 1.389140e-02	ci right 1.547345e-02	k: 1320	n:90000
KS ci ratio: 2.587388e-02	ci left: 2.005752e-01	ci right 2.058439e-01	k: 18288	n:90000
RNF103   90000 perm   22 sec   (4075 perm/sec)   p_kst 2.032000e-01   p_cons 1.466667e-02   p_joint 9.143333e-02

Joint ci ratio: 5.360575e-02	ci left: 4.939768e-02	ci right 5.212845e-02	k: 5075	n:100000
Cons ci ratio: 1.012772e-01	ci left: 1.401193e-02	ci right 1.551640e-02	k: 1475	n:100000
KS ci ratio: 2.454697e-02	ci left: 2.006997e-01	ci right 2.056975e-01	k: 20319	n:100000
RNF103   100000 perm   25 sec   (4000 perm/sec)   p_kst 2.031900e-01   p_cons 1.475000e-02   p_joint 5.075000e-02

Joint ci ratio: 5.102739e-02	ci left: 4.961742e-02	ci right 5.222451e-02	k: 5600	n:110000
Cons ci ratio: 9.649173e-02	ci left: 1.406806e-02	ci right 1.550314e-02	k: 1625	n:110000
KS ci ratio: 2.339608e-02	ci left: 2.009340e-01	ci right 2.056998e-01	k: 22364	n:110000
RNF103   110000 perm   28 sec   (3924 perm/sec)   p_kst 2.033091e-01   p_cons 1.477273e-02   p_joint 5.090909e-02

Outputting figure to mutsig2_images.part000000000147/RNF103.2_2074_110000_0.20331_0.014773_0.050909.png
                gene_name: RNF103
               theta_stop: 0.096 
                    nperm: 110000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.015 
      ci_cons_bounds_left: 0.014 
     ci_cons_bounds_right: 0.016 
                  p_joint: 0.051 
     ci_joint_bounds_left: 0.050 
    ci_joint_bounds_right: 0.052 

Current progress: 86 percent done.
RNF113A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.222915e-02	ci left: 1.458981e-01	ci right 1.601047e-01	k: 1529	n:10000
KS ci ratio: 2.110964e-02	ci left: 7.668886e-01	ci right 7.833508e-01	k: 7752	n:10000
RNF113A   10000 perm   1 sec   (6855 perm/sec)   p_kst 7.752000e-01   p_cons 1.529000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000147/RNF113A.2_1036_10000_0.7752_0.1529_1.png
                gene_name: RNF113A
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
RNF123
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.110358e-02	ci left: 7.669899e-01	ci right 7.834495e-01	k: 7753	n:10000
KS ci ratio: 3.467933e-02	ci left: 5.511066e-01	ci right 5.706579e-01	k: 5609	n:10000
RNF123   10000 perm   2 sec   (5124 perm/sec)   p_kst 5.609000e-01   p_cons 7.753000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000147/RNF123.2_4097_10000_0.5609_0.7753_1.png
                gene_name: RNF123
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
RNF125
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.665611e-02	ci left: 8.398953e-01	ci right 8.541019e-01	k: 8471	n:10000
Cons ci ratio: 9.533935e-02	ci left: 1.376631e-01	ci right 1.515446e-01	k: 1445	n:10000
KS ci ratio: 1.638534e-02	ci left: 8.441744e-01	ci right 8.582204e-01	k: 8513	n:10000
RNF125   10000 perm   1 sec   (6954 perm/sec)   p_kst 8.513000e-01   p_cons 1.445000e-01   p_joint 8.471000e-01

Outputting figure to mutsig2_images.part000000000147/RNF125.2_723_10000_0.8513_0.1445_0.8471.png
                gene_name: RNF125
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 93 percent done.
RNF128
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.263127e-02	ci left: 1.760548e-01	ci right 1.913299e-01	k: 1836	n:10000
Cons ci ratio: 1.422220e-01	ci left: 6.555836e-02	ci right 7.569349e-02	k: 705	n:10000
KS ci ratio: 4.200647e-02	ci left: 4.555849e-01	ci right 4.752352e-01	k: 4654	n:10000
RNF128   10000 perm   2 sec   (6106 perm/sec)   p_kst 4.654000e-01   p_cons 7.050000e-02   p_joint 1.836000e-01

Joint ci ratio: 2.313401e-02	ci left: 5.825446e-01	ci right 5.962294e-01	k: 11788	n:20000
Cons ci ratio: 9.644178e-02	ci left: 7.260863e-02	ci right 8.001510e-02	k: 1525	n:20000
KS ci ratio: 2.953000e-02	ci left: 4.614144e-01	ci right 4.752948e-01	k: 9367	n:20000
RNF128   20000 perm   4 sec   (5239 perm/sec)   p_kst 4.683500e-01   p_cons 7.625000e-02   p_joint 5.894000e-01

Outputting figure to mutsig2_images.part000000000147/RNF128.2_1725_20000_0.46835_0.07625_0.5894.png
                gene_name: RNF128
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.076 
      ci_cons_bounds_left: 0.073 
     ci_cons_bounds_right: 0.080 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 95 percent done.
RNF13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.526929e-02	ci left: 8.615148e-01	ci right 8.748699e-01	k: 8683	n:10000
Cons ci ratio: 3.101891e-02	ci left: 6.052801e-01	ci right 6.244529e-01	k: 6149	n:10000
KS ci ratio: 4.982851e-02	ci left: 3.726615e-01	ci right 3.918072e-01	k: 3822	n:10000
RNF13   10000 perm   2 sec   (6528 perm/sec)   p_kst 3.822000e-01   p_cons 6.149000e-01   p_joint 8.683000e-01

Outputting figure to mutsig2_images.part000000000147/RNF13.2_1182_10000_0.3822_0.6149_0.8683.png
                gene_name: RNF13
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 98 percent done.
RNF138
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.060454e-03	ci left: 9.810225e-01	ci right 9.860902e-01	k: 9837	n:10000
Cons ci ratio: 2.699424e-02	ci left: 6.690435e-01	ci right 6.874525e-01	k: 6783	n:10000
KS ci ratio: 6.077436e-02	ci left: 2.847843e-01	ci right 3.027359e-01	k: 2937	n:10000
RNF138   10000 perm   1 sec   (6747 perm/sec)   p_kst 2.937000e-01   p_cons 6.783000e-01   p_joint 9.837000e-01

Outputting figure to mutsig2_images.part000000000147/RNF138.2_766_10000_0.2937_0.6783_0.9837.png
                gene_name: RNF138
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000147
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 147 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1537>
Subject: Job 8004504: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1537>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000148> was used as the working directory.
Started at Sun Nov 11 15:15:57 2012
Results reported at Sun Nov 11 15:33:04 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000148.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000148.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 148  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000148.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1279.90 sec.
    Max Memory :      4800 MB
    Max Swap   :      7137 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
148
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 148
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 148: processing genes 13300 - 13390
Calculating significance of each gene.
Using projection method.
13300	RNF139	9.200615e-01
13301	RNF14	1
13302	RNF141	3.065560e-01
13303	RNF144A	1.734638e-04
13304	RNF144B	1
13305	RNF145	9.354486e-01
13306	RNF146	6.579755e-01
13307	RNF148	7.537049e-03
13308	RNF149	5.285237e-01
13309	RNF150	5.808877e-01
13310	RNF151	1
13311	RNF152	4.180137e-01
13312	RNF157	1.020284e-01
13313	RNF160	1
13314	RNF165	8.296862e-01
13315	RNF166	1
13316	RNF167	8.306587e-01
13317	RNF168	3.420254e-01
13318	RNF169	1
13319	RNF17	4.336633e-01
13320	RNF170	1
13321	RNF175	1
13322	RNF180	6.108968e-01
13323	RNF181	3.347791e-01
13324	RNF182	5.835281e-01
13325	RNF183	1
13326	RNF185	5.531235e-01
13327	RNF186	3.189610e-02
13328	RNF19A	1
13329	RNF19B	1
13330	RNF2	1
13331	RNF20	1
13332	RNF207	6.042431e-01
13333	RNF208	6.212511e-01
13334	RNF212	1
13335	RNF213	9.999996e-01
13336	RNF214	9.379304e-01
13337	RNF215	1
13338	RNF216	9.042015e-01
13339	RNF217	1
13340	RNF219	1
13341	RNF220	5.247774e-01
13342	RNF24	1
13343	RNF25	1
13344	RNF26	1.748885e-01
13345	RNF31	4.545161e-01
13346	RNF32	6.030561e-01
13347	RNF34	6.603129e-01
13348	RNF38	1
13349	RNF39	1
13350	RNF4	1
13351	RNF40	6.742280e-01
13352	RNF41	7.523745e-01
13353	RNF43	9.077147e-01
13354	RNF44	1
13355	RNF5	1.328330e-01
13356	RNF6	9.487742e-01
13357	RNF7	1
13358	RNF8	5.891987e-01
13359	RNFT1	2.158875e-01
13360	RNFT2	6.465878e-01
13361	RNGTT	1
13362	RNH1	7.032865e-01
13363	RNLS	1
13364	RNMT	1
13365	RNMTL1	1
13366	RNPC3	1
13367	RNPEP	8.978576e-01
13368	RNPEPL1	6.060355e-01
13369	RNPS1	7.415217e-01
13370	ROBLD3	4.239333e-01
13371	ROBO1	2.821045e-01
13372	ROBO2	1
13373	ROBO3	9.181567e-01
13374	ROBO4	1
13375	ROCK1	7.361854e-01
13376	ROCK2	8.686259e-01
13377	ROD1	1
13378	ROGDI	1
13379	ROM1	7.494270e-01
13380	ROMO1	1
13381	ROPN1	1
13382	ROPN1B	1
13383	ROPN1L	6.744015e-02
13384	ROR1	7.528235e-01
13385	ROR2	5.713383e-01
13386	RORA	7.069641e-01
13387	RORB	3.308082e-01
13388	RORC	1
13389	ROS1	9.985056e-01
13390	RP1	9.453935e-01
Done

Running MutSig 2:
Scatter job 148: processing genes 13300 - 13390
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
RP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.198297e-02	ci left: 9.089508e-01	ci right 9.200063e-01	k: 9146	n:10000
Cons ci ratio: 4.813102e-02	ci left: 3.890841e-01	ci right 4.083750e-01	k: 3987	n:10000
KS ci ratio: 1.490019e-02	ci left: 8.671325e-01	ci right 8.802490e-01	k: 8738	n:10000
RP1   10000 perm   4 sec   (2665 perm/sec)   p_kst 8.738000e-01   p_cons 3.987000e-01   p_joint 9.146000e-01

Outputting figure to mutsig2_images.part000000000148/RP1.30_6483_10000_0.8738_0.3987_0.9146.png
                gene_name: RP1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 3 percent done.
ROS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.560388e-02	ci left: 3.226707e-01	ci right 3.412273e-01	k: 3319	n:10000
Cons ci ratio: 1.020829e-01	ci left: 1.219021e-01	ci right 1.351151e-01	k: 1284	n:10000
KS ci ratio: 3.786094e-02	ci left: 5.074522e-01	ci right 5.271377e-01	k: 5173	n:10000
ROS1   10000 perm   3 sec   (2960 perm/sec)   p_kst 5.173000e-01   p_cons 1.284000e-01   p_joint 3.319000e-01

Joint ci ratio: 4.394666e-02	ci left: 2.783035e-01	ci right 2.908592e-01	k: 5691	n:20000
Cons ci ratio: 6.837259e-02	ci left: 1.363027e-01	ci right 1.460018e-01	k: 2822	n:20000
KS ci ratio: 2.658929e-02	ci left: 5.137989e-01	ci right 5.276951e-01	k: 10415	n:20000
ROS1   20000 perm   7 sec   (2756 perm/sec)   p_kst 5.207500e-01   p_cons 1.411000e-01   p_joint 2.845500e-01

Outputting figure to mutsig2_images.part000000000148/ROS1.20_7216_20000_0.52075_0.1411_0.28455.png
                gene_name: ROS1
               theta_stop: 0.068 
                    nperm: 20000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 5 percent done.
RNF213
Processing conservation and coverage...
61% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.162440e-01	ci left: 9.613473e-02	ci right 1.080982e-01	k: 1020	n:10000
Cons ci ratio: 1.488668e-02	ci left: 8.673368e-01	ci right 8.804445e-01	k: 8740	n:10000
KS ci ratio: 2.348632e-01	ci left: 2.391158e-02	ci right 3.036784e-02	k: 270	n:10000
RNF213   10000 perm   5 sec   (2110 perm/sec)   p_kst 2.700000e-02   p_cons 8.740000e-01   p_joint 1.020000e-01

Joint ci ratio: 1.027783e-01	ci left: 6.430502e-02	ci right 7.132127e-02	k: 1355	n:20000
Cons ci ratio: 1.042251e-02	ci left: 8.715050e-01	ci right 8.806854e-01	k: 17523	n:20000
KS ci ratio: 1.552265e-01	ci left: 2.849702e-02	ci right 3.334063e-02	k: 617	n:20000
RNF213   20000 perm   10 sec   (2003 perm/sec)   p_kst 3.085000e-02   p_cons 8.761500e-01   p_joint 6.775000e-02

Joint ci ratio: 7.944216e-02	ci left: 7.207681e-02	ci right 7.807245e-02	k: 2251	n:30000
Cons ci ratio: 8.494635e-03	ci left: 8.727576e-01	ci right 8.802360e-01	k: 26296	n:30000
KS ci ratio: 1.277417e-01	ci left: 2.848615e-02	ci right 3.240548e-02	k: 912	n:30000
RNF213   30000 perm   15 sec   (1956 perm/sec)   p_kst 3.040000e-02   p_cons 8.765333e-01   p_joint 7.503333e-02

Joint ci ratio: 7.453572e-02	ci left: 6.225932e-02	ci right 6.710411e-02	k: 2586	n:40000
Cons ci ratio: 7.137567e-03	ci left: 8.797339e-01	ci right 8.860604e-01	k: 35317	n:40000
KS ci ratio: 1.099928e-01	ci left: 2.907980e-02	ci right 3.248877e-02	k: 1230	n:40000
RNF213   40000 perm   21 sec   (1913 perm/sec)   p_kst 3.075000e-02   p_cons 8.829250e-01   p_joint 6.465000e-02

Joint ci ratio: 6.815205e-02	ci left: 5.994105e-02	ci right 6.418997e-02	k: 3102	n:50000
Cons ci ratio: 6.389057e-03	ci left: 8.799079e-01	ci right 8.855675e-01	k: 44138	n:50000
KS ci ratio: 9.804437e-02	ci left: 2.945906e-02	ci right 3.251571e-02	k: 1548	n:50000
RNF213   50000 perm   27 sec   (1886 perm/sec)   p_kst 3.096000e-02   p_cons 8.827600e-01   p_joint 6.204000e-02

Outputting figure to mutsig2_images.part000000000148/RNF213.10_16211_50000_0.03096_0.88276_0.06204.png
                gene_name: RNF213
               theta_stop: 0.098 
                    nperm: 50000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.062 
     ci_joint_bounds_left: 0.060 
    ci_joint_bounds_right: 0.064 

Current progress: 8 percent done.
ROBO4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.231453e-01	ci left: 8.630741e-02	ci right 9.773155e-02	k: 919	n:10000
Cons ci ratio: 4.269655e-02	ci left: 4.474996e-01	ci right 4.671253e-01	k: 4573	n:10000
KS ci ratio: 2.280349e-01	ci left: 2.542102e-02	ci right 3.205731e-02	k: 286	n:10000
ROBO4   10000 perm   2 sec   (4618 perm/sec)   p_kst 2.860000e-02   p_cons 4.573000e-01   p_joint 9.190000e-02

Joint ci ratio: 1.161846e-01	ci left: 5.071313e-02	ci right 5.701737e-02	k: 1076	n:20000
Cons ci ratio: 3.135703e-02	ci left: 4.317073e-01	ci right 4.455106e-01	k: 8772	n:20000
KS ci ratio: 1.613936e-01	ci left: 2.633371e-02	ci right 3.100466e-02	k: 572	n:20000
ROBO4   20000 perm   5 sec   (4259 perm/sec)   p_kst 2.860000e-02   p_cons 4.386000e-01   p_joint 5.380000e-02

Joint ci ratio: 9.534945e-02	ci left: 5.078479e-02	ci right 5.590214e-02	k: 1599	n:30000
Cons ci ratio: 2.507839e-02	ci left: 4.431936e-01	ci right 4.544830e-01	k: 13465	n:30000
KS ci ratio: 1.327757e-01	ci left: 2.635586e-02	ci right 3.013624e-02	k: 846	n:30000
ROBO4   30000 perm   7 sec   (4103 perm/sec)   p_kst 2.820000e-02   p_cons 4.488333e-01   p_joint 5.330000e-02

Joint ci ratio: 8.293185e-02	ci left: 5.070198e-02	ci right 5.511321e-02	k: 2115	n:40000
Cons ci ratio: 2.167317e-02	ci left: 4.449911e-01	ci right 4.547662e-01	k: 17995	n:40000
KS ci ratio: 1.155858e-01	ci left: 2.633224e-02	ci right 2.958677e-02	k: 1117	n:40000
ROBO4   40000 perm   10 sec   (3983 perm/sec)   p_kst 2.792500e-02   p_cons 4.498750e-01   p_joint 5.287500e-02

Joint ci ratio: 6.570276e-02	ci left: 6.427224e-02	ci right 6.865826e-02	k: 3322	n:50000
Cons ci ratio: 1.938191e-02	ci left: 4.455924e-01	ci right 4.543334e-01	k: 22498	n:50000
KS ci ratio: 1.024259e-01	ci left: 2.700042e-02	ci right 2.993467e-02	k: 1422	n:50000
ROBO4   50000 perm   13 sec   (3893 perm/sec)   p_kst 2.844000e-02   p_cons 4.499600e-01   p_joint 6.644000e-02

Joint ci ratio: 6.746730e-02	ci left: 5.146671e-02	ci right 5.507665e-02	k: 3195	n:60000
Cons ci ratio: 1.771331e-02	ci left: 4.454140e-01	ci right 4.533909e-01	k: 26964	n:60000
KS ci ratio: 9.391585e-02	ci left: 2.688992e-02	ci right 2.955597e-02	k: 1692	n:60000
ROBO4   60000 perm   16 sec   (3818 perm/sec)   p_kst 2.820000e-02   p_cons 4.494000e-01   p_joint 5.325000e-02

Outputting figure to mutsig2_images.part000000000148/ROBO4.10_3096_60000_0.0282_0.4494_0.05325.png
                gene_name: ROBO4
               theta_stop: 0.094 
                    nperm: 60000 
                     p_ks: 0.028 
        ci_ks_bounds_left: 0.027 
       ci_ks_bounds_right: 0.030 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.053 
     ci_joint_bounds_left: 0.051 
    ci_joint_bounds_right: 0.055 

Current progress: 11 percent done.
ROBO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.611998e-02	ci left: 6.833505e-01	ci right 7.015373e-01	k: 6925	n:10000
Cons ci ratio: 2.897772e-02	ci left: 6.371392e-01	ci right 6.559753e-01	k: 6466	n:10000
KS ci ratio: 3.651866e-02	ci left: 5.254655e-01	ci right 5.451139e-01	k: 5353	n:10000
ROBO1   10000 perm   3 sec   (3839 perm/sec)   p_kst 5.353000e-01   p_cons 6.466000e-01   p_joint 6.925000e-01

Outputting figure to mutsig2_images.part000000000148/ROBO1.9_5148_10000_0.5353_0.6466_0.6925.png
                gene_name: ROBO1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 13 percent done.
ROBO2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.718438e-02	ci left: 5.164573e-01	ci right 5.361274e-01	k: 5263	n:10000
Cons ci ratio: 1.833616e-02	ci left: 8.128353e-01	ci right 8.279776e-01	k: 8205	n:10000
KS ci ratio: 5.281585e-02	ci left: 3.457140e-01	ci right 3.645704e-01	k: 3551	n:10000
ROBO2   10000 perm   2 sec   (4095 perm/sec)   p_kst 3.551000e-01   p_cons 8.205000e-01   p_joint 5.263000e-01

Outputting figure to mutsig2_images.part000000000148/ROBO2.9_4243_10000_0.3551_0.8205_0.5263.png
                gene_name: ROBO2
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 16 percent done.
RNF144A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.131928e-01	ci left: 2.920604e-02	ci right 3.626959e-02	k: 326	n:10000
Cons ci ratio: 4.922911e-01	ci left: 4.756711e-03	ci right 7.941167e-03	k: 62	n:10000
KS ci ratio: 8.676772e-02	ci left: 1.620951e-01	ci right 1.768979e-01	k: 1694	n:10000
RNF144A   10000 perm   2 sec   (5629 perm/sec)   p_kst 1.694000e-01   p_cons 6.200000e-03   p_joint 3.260000e-02

Joint ci ratio: 2.604388e-01	ci left: 9.741161e-03	ci right 1.270351e-02	k: 223	n:20000
Cons ci ratio: 2.967330e-01	ci left: 7.367140e-03	ci right 9.978720e-03	k: 172	n:20000
KS ci ratio: 6.028727e-02	ci left: 1.692132e-01	ci right 1.797817e-01	k: 3489	n:20000
RNF144A   20000 perm   4 sec   (5009 perm/sec)   p_kst 1.744500e-01   p_cons 8.600000e-03   p_joint 1.115000e-02

Joint ci ratio: 1.316602e-01	ci left: 2.680750e-02	ci right 3.061784e-02	k: 860	n:30000
Cons ci ratio: 2.842338e-01	ci left: 5.405103e-03	ci right 7.225828e-03	k: 188	n:30000
KS ci ratio: 4.898108e-02	ci left: 1.716065e-01	ci right 1.802563e-01	k: 5277	n:30000
RNF144A   30000 perm   6 sec   (4780 perm/sec)   p_kst 1.759000e-01   p_cons 6.266667e-03   p_joint 2.866667e-02

Joint ci ratio: 1.415959e-01	ci left: 1.746740e-02	ci right 2.015311e-02	k: 751	n:40000
Cons ci ratio: 2.577298e-01	ci left: 5.009201e-03	ci right 6.513914e-03	k: 229	n:40000
KS ci ratio: 4.235447e-02	ci left: 1.726262e-01	ci right 1.801208e-01	k: 7054	n:40000
RNF144A   40000 perm   9 sec   (4616 perm/sec)   p_kst 1.763500e-01   p_cons 5.725000e-03   p_joint 1.877500e-02

Joint ci ratio: 7.773233e-02	ci left: 4.651553e-02	ci right 5.029712e-02	k: 2419	n:50000
Cons ci ratio: 1.819265e-01	ci left: 8.362639e-03	ci right 1.005508e-02	k: 459	n:50000
KS ci ratio: 3.787978e-02	ci left: 1.730481e-01	ci right 1.797496e-01	k: 8819	n:50000
RNF144A   50000 perm   11 sec   (4488 perm/sec)   p_kst 1.763800e-01   p_cons 9.180000e-03   p_joint 4.838000e-02

Joint ci ratio: 7.879351e-02	ci left: 3.805353e-02	ci right 4.119120e-02	k: 2376	n:60000
Cons ci ratio: 1.666863e-01	ci left: 8.371646e-03	ci right 9.909729e-03	k: 547	n:60000
KS ci ratio: 3.472688e-02	ci left: 1.721161e-01	ci right 1.782154e-01	k: 10509	n:60000
RNF144A   60000 perm   14 sec   (4370 perm/sec)   p_kst 1.751500e-01   p_cons 9.116667e-03   p_joint 3.960000e-02

Joint ci ratio: 8.592872e-02	ci left: 2.762943e-02	ci right 3.012411e-02	k: 2020	n:70000
Cons ci ratio: 1.541191e-01	ci left: 8.451028e-03	ci right 9.875819e-03	k: 640	n:70000
KS ci ratio: 3.295324e-02	ci left: 1.653790e-01	ci right 1.709343e-01	k: 11770	n:70000
RNF144A   70000 perm   16 sec   (4272 perm/sec)   p_kst 1.681429e-01   p_cons 9.142857e-03   p_joint 2.885714e-02

Joint ci ratio: 8.567603e-02	ci left: 2.440639e-02	ci right 2.660321e-02	k: 2039	n:80000
Cons ci ratio: 1.442221e-01	ci left: 8.489737e-03	ci right 9.821224e-03	k: 731	n:80000
KS ci ratio: 3.091835e-02	ci left: 1.647194e-01	ci right 1.699047e-01	k: 13384	n:80000
RNF144A   80000 perm   19 sec   (4181 perm/sec)   p_kst 1.673000e-01   p_cons 9.137500e-03   p_joint 2.548750e-02

Joint ci ratio: 8.580054e-02	ci left: 2.169325e-02	ci right 2.364880e-02	k: 2039	n:90000
Cons ci ratio: 1.365188e-01	ci left: 8.457715e-03	ci right 9.707568e-03	k: 816	n:90000
KS ci ratio: 2.860999e-02	ci left: 1.701140e-01	ci right 1.750627e-01	k: 15532	n:90000
RNF144A   90000 perm   22 sec   (4097 perm/sec)   p_kst 1.725778e-01   p_cons 9.066667e-03   p_joint 2.265556e-02

Joint ci ratio: 8.426989e-02	ci left: 2.028671e-02	ci right 2.208121e-02	k: 2117	n:100000
Cons ci ratio: 1.295692e-01	ci left: 8.482006e-03	ci right 9.666731e-03	k: 906	n:100000
KS ci ratio: 2.715503e-02	ci left: 1.701032e-01	ci right 1.747958e-01	k: 17244	n:100000
RNF144A   100000 perm   25 sec   (4019 perm/sec)   p_kst 1.724400e-01   p_cons 9.060000e-03   p_joint 2.117000e-02

Joint ci ratio: 8.441375e-02	ci left: 1.841501e-02	ci right 2.004684e-02	k: 2114	n:110000
Cons ci ratio: 1.244681e-01	ci left: 8.379847e-03	ci right 9.500820e-03	k: 982	n:110000
KS ci ratio: 2.591236e-02	ci left: 1.699820e-01	ci right 1.744535e-01	k: 18943	n:110000
RNF144A   110000 perm   28 sec   (3946 perm/sec)   p_kst 1.722091e-01   p_cons 8.927273e-03   p_joint 1.921818e-02

Joint ci ratio: 8.041714e-02	ci left: 1.863526e-02	ci right 2.020476e-02	k: 2329	n:120000
Cons ci ratio: 1.186879e-01	ci left: 8.473388e-03	ci right 9.550541e-03	k: 1080	n:120000
KS ci ratio: 2.481877e-02	ci left: 1.699681e-01	ci right 1.742478e-01	k: 20652	n:120000
RNF144A   120000 perm   31 sec   (3877 perm/sec)   p_kst 1.721000e-01   p_cons 9.000000e-03   p_joint 1.940833e-02

Joint ci ratio: 7.726491e-02	ci left: 1.866467e-02	ci right 2.017226e-02	k: 2523	n:130000
Cons ci ratio: 1.139376e-01	ci left: 8.508704e-03	ci right 9.544144e-03	k: 1172	n:130000
KS ci ratio: 2.379700e-02	ci left: 1.706258e-01	ci right 1.747427e-01	k: 22448	n:130000
RNF144A   130000 perm   34 sec   (3797 perm/sec)   p_kst 1.726769e-01   p_cons 9.015385e-03   p_joint 1.940769e-02

Joint ci ratio: 7.578962e-02	ci left: 1.803888e-02	ci right 1.946686e-02	k: 2624	n:140000
Cons ci ratio: 1.102889e-01	ci left: 8.449388e-03	ci right 9.442539e-03	k: 1251	n:140000
KS ci ratio: 2.296055e-02	ci left: 1.703393e-01	ci right 1.743029e-01	k: 24124	n:140000
RNF144A   140000 perm   37 sec   (3738 perm/sec)   p_kst 1.723143e-01   p_cons 8.935714e-03   p_joint 1.874286e-02

Joint ci ratio: 7.403542e-02	ci left: 1.766697e-02	ci right 1.903174e-02	k: 2751	n:150000
Cons ci ratio: 1.072545e-01	ci left: 8.353014e-03	ci right 9.306117e-03	k: 1323	n:150000
KS ci ratio: 2.217952e-02	ci left: 1.704384e-01	ci right 1.742676e-01	k: 25852	n:150000
RNF144A   150000 perm   41 sec   (3675 perm/sec)   p_kst 1.723467e-01   p_cons 8.820000e-03   p_joint 1.834000e-02

Joint ci ratio: 7.992268e-02	ci left: 1.422013e-02	ci right 1.541004e-02	k: 2369	n:160000
Cons ci ratio: 1.042692e-01	ci left: 8.299459e-03	ci right 9.218475e-03	k: 1400	n:160000
KS ci ratio: 2.147502e-02	ci left: 1.705022e-01	ci right 1.742097e-01	k: 27576	n:160000
RNF144A   160000 perm   44 sec   (3618 perm/sec)   p_kst 1.723500e-01   p_cons 8.750000e-03   p_joint 1.480625e-02

Joint ci ratio: 7.728948e-02	ci left: 1.432943e-02	ci right 1.548720e-02	k: 2533	n:170000
Cons ci ratio: 1.008340e-01	ci left: 8.367225e-03	ci right 9.261412e-03	k: 1497	n:170000
KS ci ratio: 2.082720e-02	ci left: 1.706481e-01	ci right 1.742454e-01	k: 29315	n:170000
RNF144A   170000 perm   48 sec   (3554 perm/sec)   p_kst 1.724412e-01   p_cons 8.805882e-03   p_joint 1.490000e-02

Joint ci ratio: 6.760985e-02	ci left: 1.771311e-02	ci right 1.895803e-02	k: 3299	n:180000
Cons ci ratio: 9.787227e-02	ci left: 8.400797e-03	ci right 9.270688e-03	k: 1589	n:180000
KS ci ratio: 2.037797e-02	ci left: 1.687818e-01	ci right 1.722621e-01	k: 30693	n:180000
RNF144A   180000 perm   51 sec   (3501 perm/sec)   p_kst 1.705167e-01   p_cons 8.827778e-03   p_joint 1.832778e-02

Outputting figure to mutsig2_images.part000000000148/RNF144A.7_907_180000_0.17052_0.0088278_0.018328.png
                gene_name: RNF144A
               theta_stop: 0.098 
                    nperm: 180000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.0088 
      ci_cons_bounds_left: 0.0084 
     ci_cons_bounds_right: 0.0093 
                  p_joint: 0.018 
     ci_joint_bounds_left: 0.018 
    ci_joint_bounds_right: 0.019 

Current progress: 18 percent done.
RNF17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.047280e-02	ci left: 7.775249e-01	ci right 7.937083e-01	k: 7857	n:10000
Cons ci ratio: 5.792695e-02	ci left: 3.049087e-01	ci right 3.231997e-01	k: 3140	n:10000
KS ci ratio: 1.492718e-02	ci left: 8.667238e-01	ci right 8.798579e-01	k: 8734	n:10000
RNF17   10000 perm   3 sec   (3816 perm/sec)   p_kst 8.734000e-01   p_cons 3.140000e-01   p_joint 7.857000e-01

Outputting figure to mutsig2_images.part000000000148/RNF17.7_5012_10000_0.8734_0.314_0.7857.png
                gene_name: RNF17
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.79 

Current progress: 21 percent done.
ROBO3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.429577e-03	ci left: 9.906076e-01	ci right 9.940963e-01	k: 9925	n:10000
KS ci ratio: 1.657249e-02	ci left: 8.412196e-01	ci right 8.553769e-01	k: 8484	n:10000
ROBO3   10000 perm   2 sec   (4197 perm/sec)   p_kst 8.484000e-01   p_cons 9.925000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000148/ROBO3.7_4273_10000_0.8484_0.9925_1.png
                gene_name: ROBO3
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 24 percent done.
RNF157
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.411390e-02	ci left: 2.632958e-01	ci right 2.808372e-01	k: 2720	n:10000
Cons ci ratio: 1.355230e-01	ci left: 7.194552e-02	ci right 8.250234e-02	k: 771	n:10000
KS ci ratio: 2.545351e-02	ci left: 6.943394e-01	ci right 7.123420e-01	k: 7034	n:10000
RNF157   10000 perm   2 sec   (5333 perm/sec)   p_kst 7.034000e-01   p_cons 7.710000e-02   p_joint 2.720000e-01

Joint ci ratio: 5.029760e-02	ci left: 2.270562e-01	ci right 2.388215e-01	k: 4658	n:20000
Cons ci ratio: 9.431710e-02	ci left: 7.573829e-02	ci right 8.328449e-02	k: 1589	n:20000
KS ci ratio: 1.776404e-02	ci left: 7.024989e-01	ci right 7.151403e-01	k: 14177	n:20000
RNF157   20000 perm   4 sec   (4804 perm/sec)   p_kst 7.088500e-01   p_cons 7.945000e-02   p_joint 2.329000e-01

Outputting figure to mutsig2_images.part000000000148/RNF157.6_2116_20000_0.70885_0.07945_0.2329.png
                gene_name: RNF157
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.079 
      ci_cons_bounds_left: 0.076 
     ci_cons_bounds_right: 0.083 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 26 percent done.
RNF148
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.327738e-02	ci left: 4.408137e-01	ci right 4.604151e-01	k: 4506	n:10000
Cons ci ratio: 8.692213e-02	ci left: 1.616039e-01	ci right 1.763894e-01	k: 1689	n:10000
KS ci ratio: 2.046673e-02	ci left: 7.776263e-01	ci right 7.938069e-01	k: 7858	n:10000
RNF148   10000 perm   2 sec   (5719 perm/sec)   p_kst 7.858000e-01   p_cons 1.689000e-01   p_joint 4.506000e-01

Outputting figure to mutsig2_images.part000000000148/RNF148.5_922_10000_0.7858_0.1689_0.4506.png
                gene_name: RNF148
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 29 percent done.
RNF31
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.742576e-02	ci left: 3.961543e-01	ci right 4.155006e-01	k: 4058	n:10000
Cons ci ratio: 7.750296e-02	ci left: 1.957449e-01	ci right 2.116281e-01	k: 2036	n:10000
KS ci ratio: 3.241811e-02	ci left: 5.840980e-01	ci right 6.034473e-01	k: 5938	n:10000
RNF31   10000 perm   2 sec   (4529 perm/sec)   p_kst 5.938000e-01   p_cons 2.036000e-01   p_joint 4.058000e-01

Outputting figure to mutsig2_images.part000000000148/RNF31.5_3303_10000_0.5938_0.2036_0.4058.png
                gene_name: RNF31
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 32 percent done.
ROCK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.840600e-02	ci left: 2.386708e-01	ci right 2.556767e-01	k: 2471	n:10000
Cons ci ratio: 1.809928e-02	ci left: 8.166970e-01	ci right 8.317137e-01	k: 8243	n:10000
KS ci ratio: 8.377868e-02	ci left: 1.720224e-01	ci right 1.871647e-01	k: 1795	n:10000
ROCK1   10000 perm   2 sec   (4638 perm/sec)   p_kst 1.795000e-01   p_cons 8.243000e-01   p_joint 2.471000e-01

Outputting figure to mutsig2_images.part000000000148/ROCK1.5_4197_10000_0.1795_0.8243_0.2471.png
                gene_name: ROCK1
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 34 percent done.
ROR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.181557e-02	ci left: 2.778498e-01	ci right 2.956746e-01	k: 2867	n:10000
Cons ci ratio: 9.805070e-02	ci left: 1.310025e-01	ci right 1.446093e-01	k: 1377	n:10000
KS ci ratio: 4.769225e-02	ci left: 3.934654e-01	ci right 4.127911e-01	k: 4031	n:10000
ROR2   10000 perm   2 sec   (5239 perm/sec)   p_kst 4.031000e-01   p_cons 1.377000e-01   p_joint 2.867000e-01

Outputting figure to mutsig2_images.part000000000148/ROR2.5_2868_10000_0.4031_0.1377_0.2867.png
                gene_name: ROR2
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 37 percent done.
RNF145
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.076116e-03	ci left: 9.809150e-01	ci right 9.859977e-01	k: 9836	n:10000
Cons ci ratio: 4.719059e-02	ci left: 3.985447e-01	ci right 4.179088e-01	k: 4082	n:10000
KS ci ratio: 8.761311e-03	ci left: 9.481473e-01	ci right 9.565866e-01	k: 9525	n:10000
RNF145   10000 perm   2 sec   (5479 perm/sec)   p_kst 9.525000e-01   p_cons 4.082000e-01   p_joint 9.836000e-01

Outputting figure to mutsig2_images.part000000000148/RNF145.4_2120_10000_0.9525_0.4082_0.9836.png
                gene_name: RNF145
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 39 percent done.
RNF40
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.935912e-02	ci left: 6.311057e-01	ci right 6.500123e-01	k: 6406	n:10000
Cons ci ratio: 1.919576e-02	ci left: 7.987200e-01	ci right 8.143010e-01	k: 8066	n:10000
KS ci ratio: 3.397380e-02	ci left: 5.612300e-01	ci right 5.807287e-01	k: 5710	n:10000
RNF40   10000 perm   2 sec   (4895 perm/sec)   p_kst 5.710000e-01   p_cons 8.066000e-01   p_joint 6.406000e-01

Outputting figure to mutsig2_images.part000000000148/RNF40.4_3082_10000_0.571_0.8066_0.6406.png
                gene_name: RNF40
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 42 percent done.
RORB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.497778e-03	ci left: 9.779161e-01	ci right 9.833989e-01	k: 9808	n:10000
Cons ci ratio: 1.479387e-01	ci left: 6.072801e-02	ci right 7.052689e-02	k: 655	n:10000
KS ci ratio: 1.119938e-02	ci left: 9.192503e-01	ci right 9.297008e-01	k: 9246	n:10000
RORB   10000 perm   2 sec   (5884 perm/sec)   p_kst 9.246000e-01   p_cons 6.550000e-02   p_joint 9.808000e-01

Joint ci ratio: 4.039357e-03	ci left: 9.771783e-01	ci right 9.811806e-01	k: 19585	n:20000
Cons ci ratio: 1.062673e-01	ci left: 6.030523e-02	ci right 6.712229e-02	k: 1273	n:20000
KS ci ratio: 7.931521e-03	ci left: 9.205981e-01	ci right 9.279780e-01	k: 18487	n:20000
RORB   20000 perm   4 sec   (5201 perm/sec)   p_kst 9.243500e-01   p_cons 6.365000e-02   p_joint 9.792500e-01

Joint ci ratio: 3.260274e-03	ci left: 9.780403e-01	ci right 9.812659e-01	k: 29391	n:30000
Cons ci ratio: 8.725616e-02	ci left: 6.027642e-02	ci right 6.580858e-02	k: 1890	n:30000
KS ci ratio: 6.445434e-03	ci left: 9.219615e-01	ci right 9.279559e-01	k: 27750	n:30000
RORB   30000 perm   6 sec   (4937 perm/sec)   p_kst 9.250000e-01   p_cons 6.300000e-02   p_joint 9.797000e-01

Outputting figure to mutsig2_images.part000000000148/RORB.4_1420_30000_0.925_0.063_0.9797.png
                gene_name: RORB
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.063 
      ci_cons_bounds_left: 0.060 
     ci_cons_bounds_right: 0.066 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 45 percent done.
RNF168
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.214301e-02	ci left: 7.495823e-01	ci right 7.664671e-01	k: 7581	n:10000
Cons ci ratio: 3.969102e-02	ci left: 4.838540e-01	ci right 5.035497e-01	k: 4937	n:10000
KS ci ratio: 1.751552e-02	ci left: 8.261534e-01	ci right 8.408517e-01	k: 8336	n:10000
RNF168   10000 perm   2 sec   (6125 perm/sec)   p_kst 8.336000e-01   p_cons 4.937000e-01   p_joint 7.581000e-01

Outputting figure to mutsig2_images.part000000000148/RNF168.3_1740_10000_0.8336_0.4937_0.7581.png
                gene_name: RNF168
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 47 percent done.
RNF186
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.213559e-02	ci left: 9.068938e-01	ci right 9.180646e-01	k: 9126	n:10000
Cons ci ratio: 5.456728e-02	ci left: 3.310111e-01	ci right 3.496820e-01	k: 3403	n:10000
KS ci ratio: 4.226904e-02	ci left: 4.524903e-01	ci right 4.721317e-01	k: 4623	n:10000
RNF186   10000 perm   2 sec   (6532 perm/sec)   p_kst 4.623000e-01   p_cons 3.403000e-01   p_joint 9.126000e-01

Outputting figure to mutsig2_images.part000000000148/RNF186.3_688_10000_0.4623_0.3403_0.9126.png
                gene_name: RNF186
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 50 percent done.
RNF20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.925687e-02	ci left: 4.893516e-01	ci right 5.090488e-01	k: 4992	n:10000
Cons ci ratio: 1.785097e-01	ci left: 4.188120e-02	ci right 5.018585e-02	k: 459	n:10000
KS ci ratio: 2.445056e-02	ci left: 7.109857e-01	ci right 7.286861e-01	k: 7199	n:10000
RNF20   10000 perm   2 sec   (5211 perm/sec)   p_kst 7.199000e-01   p_cons 4.590000e-02   p_joint 4.992000e-01

Joint ci ratio: 2.920004e-02	ci left: 4.670091e-01	ci right 4.808985e-01	k: 9479	n:20000
Cons ci ratio: 1.255149e-01	ci left: 4.357437e-02	ci right 4.945837e-02	k: 929	n:20000
KS ci ratio: 1.745678e-02	ci left: 7.096944e-01	ci right 7.222428e-01	k: 14320	n:20000
RNF20   20000 perm   4 sec   (4734 perm/sec)   p_kst 7.160000e-01   p_cons 4.645000e-02   p_joint 4.739500e-01

Joint ci ratio: 1.814782e-02	ci left: 6.030836e-01	ci right 6.141620e-01	k: 18259	n:30000
Cons ci ratio: 1.013829e-01	ci left: 4.505525e-02	ci right 4.989954e-02	k: 1423	n:30000
KS ci ratio: 1.429090e-02	ci left: 7.097875e-01	ci right 7.200375e-01	k: 21448	n:30000
RNF20   30000 perm   7 sec   (4532 perm/sec)   p_kst 7.149333e-01   p_cons 4.743333e-02   p_joint 6.086333e-01

Joint ci ratio: 9.799510e-05	ci left: 9.999078e-01	ci right 1	k: 40000	n:40000
Cons ci ratio: 8.731078e-02	ci left: 4.587654e-02	ci right 5.008939e-02	k: 1918	n:40000
KS ci ratio: 1.233029e-02	ci left: 7.120049e-01	ci right 7.208636e-01	k: 28658	n:40000
RNF20   40000 perm   9 sec   (4394 perm/sec)   p_kst 7.164500e-01   p_cons 4.795000e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000148/RNF20.3_3004_40000_0.71645_0.04795_1.png
                gene_name: RNF20
               theta_stop: 0.087 
                    nperm: 40000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.048 
      ci_cons_bounds_left: 0.046 
     ci_cons_bounds_right: 0.050 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 53 percent done.
RNF220
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.972923e-02	ci left: 7.898932e-01	ci right 8.057329e-01	k: 7979	n:10000
Cons ci ratio: 9.176931e-02	ci left: 1.471732e-01	ci right 1.614288e-01	k: 1542	n:10000
KS ci ratio: 2.497861e-02	ci left: 7.022067e-01	ci right 7.200701e-01	k: 7112	n:10000
RNF220   10000 perm   2 sec   (6069 perm/sec)   p_kst 7.112000e-01   p_cons 1.542000e-01   p_joint 7.979000e-01

Outputting figure to mutsig2_images.part000000000148/RNF220.3_1757_10000_0.7112_0.1542_0.7979.png
                gene_name: RNF220
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 55 percent done.
RNF26
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.874217e-02	ci left: 4.959503e-01	ci right 5.156463e-01	k: 5058	n:10000
Cons ci ratio: 6.658135e-02	ci left: 2.487538e-01	ci right 2.659878e-01	k: 2573	n:10000
KS ci ratio: 4.237119e-02	ci left: 4.512924e-01	ci right 4.709303e-01	k: 4611	n:10000
RNF26   10000 perm   2 sec   (6366 perm/sec)   p_kst 4.611000e-01   p_cons 2.573000e-01   p_joint 5.058000e-01

Outputting figure to mutsig2_images.part000000000148/RNF26.3_1306_10000_0.4611_0.2573_0.5058.png
                gene_name: RNF26
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 58 percent done.
RNF43
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.041024e-02	ci left: 2.872616e-01	ci right 3.052572e-01	k: 2962	n:10000
Cons ci ratio: 3.777764e-02	ci left: 5.085527e-01	ci right 5.282366e-01	k: 5184	n:10000
KS ci ratio: 1.429861e-01	ci left: 6.488166e-02	ci right 7.497062e-02	k: 698	n:10000
RNF43   10000 perm   2 sec   (5426 perm/sec)   p_kst 6.980000e-02   p_cons 5.184000e-01   p_joint 2.962000e-01

Joint ci ratio: 5.679772e-02	ci left: 1.868581e-01	ci right 1.978315e-01	k: 3846	n:20000
Cons ci ratio: 2.675756e-02	ci left: 5.106476e-01	ci right 5.245472e-01	k: 10352	n:20000
KS ci ratio: 9.780136e-02	ci left: 7.070242e-02	ci right 7.802190e-02	k: 1486	n:20000
RNF43   20000 perm   4 sec   (4862 perm/sec)   p_kst 7.430000e-02   p_cons 5.176000e-01   p_joint 1.923000e-01

Outputting figure to mutsig2_images.part000000000148/RNF43.3_2388_20000_0.0743_0.5176_0.1923.png
                gene_name: RNF43
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.074 
        ci_ks_bounds_left: 0.071 
       ci_ks_bounds_right: 0.078 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 61 percent done.
RNFT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.227413e-02	ci left: 2.190177e-01	ci right 2.355415e-01	k: 2272	n:10000
Cons ci ratio: 2.693860e-02	ci left: 6.699500e-01	ci right 6.883455e-01	k: 6792	n:10000
KS ci ratio: 1.090088e-01	ci left: 1.082244e-01	ci right 1.208011e-01	k: 1144	n:10000
RNFT1   10000 perm   2 sec   (6281 perm/sec)   p_kst 1.144000e-01   p_cons 6.792000e-01   p_joint 2.272000e-01

Joint ci ratio: 5.644373e-02	ci left: 1.887868e-01	ci right 1.998022e-01	k: 3885	n:20000
Cons ci ratio: 1.925266e-02	ci left: 6.680064e-01	ci right 6.810428e-01	k: 13491	n:20000
KS ci ratio: 7.668576e-02	ci left: 1.111014e-01	ci right 1.200107e-01	k: 2310	n:20000
RNFT1   20000 perm   4 sec   (5542 perm/sec)   p_kst 1.155000e-01   p_cons 6.745500e-01   p_joint 1.942500e-01

Outputting figure to mutsig2_images.part000000000148/RNFT1.3_1344_20000_0.1155_0.67455_0.19425.png
                gene_name: RNFT1
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 63 percent done.
ROCK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.839688e-02	ci left: 6.463937e-01	ci right 6.651154e-01	k: 6558	n:10000
Cons ci ratio: 1.246431e-01	ci left: 8.436377e-02	ci right 9.567638e-02	k: 899	n:10000
KS ci ratio: 1.433436e-02	ci left: 8.756178e-01	ci right 8.883587e-01	k: 8821	n:10000
ROCK2   10000 perm   2 sec   (4671 perm/sec)   p_kst 8.821000e-01   p_cons 8.990000e-02   p_joint 6.558000e-01

Joint ci ratio: 2.791956e-02	ci left: 4.893966e-01	ci right 5.033044e-01	k: 9927	n:20000
Cons ci ratio: 8.702652e-02	ci left: 8.807791e-02	ci right 9.614113e-02	k: 1841	n:20000
KS ci ratio: 1.005673e-02	ci left: 8.791761e-01	ci right 8.881120e-01	k: 17674	n:20000
ROCK2   20000 perm   5 sec   (4245 perm/sec)   p_kst 8.837000e-01   p_cons 9.205000e-02   p_joint 4.963500e-01

Outputting figure to mutsig2_images.part000000000148/ROCK2.3_4299_20000_0.8837_0.09205_0.49635.png
                gene_name: ROCK2
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.092 
      ci_cons_bounds_left: 0.088 
     ci_cons_bounds_right: 0.096 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.50 

Current progress: 66 percent done.
ROPN1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.297202e-02	ci left: 5.758711e-01	ci right 5.952790e-01	k: 5856	n:10000
Cons ci ratio: 6.312521e-02	ci left: 2.694328e-01	ci right 2.870966e-01	k: 2782	n:10000
KS ci ratio: 4.883062e-02	ci left: 3.822151e-01	ci right 4.014480e-01	k: 3918	n:10000
ROPN1L   10000 perm   1 sec   (6670 perm/sec)   p_kst 3.918000e-01   p_cons 2.782000e-01   p_joint 5.856000e-01

Outputting figure to mutsig2_images.part000000000148/ROPN1L.3_713_10000_0.3918_0.2782_0.5856.png
                gene_name: ROPN1L
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 68 percent done.
ROR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.683541e-02	ci left: 5.211612e-01	ci right 5.408207e-01	k: 5310	n:10000
Cons ci ratio: 8.695309e-02	ci left: 1.615057e-01	ci right 1.762877e-01	k: 1688	n:10000
KS ci ratio: 3.683541e-02	ci left: 5.211612e-01	ci right 5.408207e-01	k: 5310	n:10000
ROR1   10000 perm   2 sec   (5363 perm/sec)   p_kst 5.310000e-01   p_cons 1.688000e-01   p_joint 5.310000e-01

Outputting figure to mutsig2_images.part000000000148/ROR1.3_2858_10000_0.531_0.1688_0.531.png
                gene_name: ROR1
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 71 percent done.
RNF160
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.420475e-02	ci left: 3.339906e-01	ci right 3.527007e-01	k: 3433	n:10000
Cons ci ratio: 2.452959e-01	ci left: 2.184098e-02	ci right 2.803999e-02	k: 248	n:10000
KS ci ratio: 1.107643e-01	ci left: 1.051021e-01	ci right 1.175253e-01	k: 1112	n:10000
RNF160   10000 perm   2 sec   (4044 perm/sec)   p_kst 1.112000e-01   p_cons 2.480000e-02   p_joint 3.433000e-01

Joint ci ratio: 1.354374e-01	ci left: 3.747135e-02	ci right 4.296335e-02	k: 803	n:20000
Cons ci ratio: 1.743543e-01	ci left: 2.249752e-02	ci right 2.684217e-02	k: 492	n:20000
KS ci ratio: 7.876228e-02	ci left: 1.058430e-01	ci right 1.145707e-01	k: 2203	n:20000
RNF160   20000 perm   5 sec   (3780 perm/sec)   p_kst 1.101500e-01   p_cons 2.460000e-02   p_joint 4.015000e-02

Joint ci ratio: 3.309303e-02	ci left: 3.133618e-01	ci right 3.239400e-01	k: 9559	n:30000
Cons ci ratio: 1.417235e-01	ci left: 2.310186e-02	ci right 2.665763e-02	k: 745	n:30000
KS ci ratio: 6.444105e-02	ci left: 1.062506e-01	ci right 1.133585e-01	k: 3293	n:30000
RNF160   30000 perm   8 sec   (3673 perm/sec)   p_kst 1.097667e-01   p_cons 2.483333e-02   p_joint 3.186333e-01

Joint ci ratio: 4.407143e-02	ci left: 1.614735e-01	ci right 1.687752e-01	k: 6604	n:40000
Cons ci ratio: 1.232885e-01	ci left: 2.312831e-02	ci right 2.619122e-02	k: 985	n:40000
KS ci ratio: 5.590074e-02	ci left: 1.064064e-01	ci right 1.125504e-01	k: 4378	n:40000
RNF160   40000 perm   11 sec   (3607 perm/sec)   p_kst 1.094500e-01   p_cons 2.462500e-02   p_joint 1.651000e-01

Joint ci ratio: 4.005461e-02	ci left: 1.575304e-01	ci right 1.639891e-01	k: 8037	n:50000
Cons ci ratio: 1.116981e-01	ci left: 2.269563e-02	ci right 2.540001e-02	k: 1201	n:50000
KS ci ratio: 5.005445e-02	ci left: 1.065185e-01	ci right 1.120069e-01	k: 5462	n:50000
RNF160   50000 perm   14 sec   (3543 perm/sec)   p_kst 1.092400e-01   p_cons 2.402000e-02   p_joint 1.607400e-01

Joint ci ratio: 3.234551e-02	ci left: 1.934595e-01	ci right 1.998365e-01	k: 11798	n:60000
Cons ci ratio: 1.017999e-01	ci left: 2.288762e-02	ci right 2.535871e-02	k: 1446	n:60000
KS ci ratio: 4.572699e-02	ci left: 1.066160e-01	ci right 1.116219e-01	k: 6546	n:60000
RNF160   60000 perm   17 sec   (3485 perm/sec)   p_kst 1.091000e-01   p_cons 2.410000e-02   p_joint 1.966333e-01

Joint ci ratio: 3.428390e-02	ci left: 1.546667e-01	ci right 1.600760e-01	k: 11015	n:70000
Cons ci ratio: 9.416755e-02	ci left: 2.301840e-02	ci right 2.530699e-02	k: 1690	n:70000
KS ci ratio: 4.241660e-02	ci left: 1.064316e-01	ci right 1.110580e-01	k: 7611	n:70000
RNF160   70000 perm   20 sec   (3431 perm/sec)   p_kst 1.087286e-01   p_cons 2.414286e-02   p_joint 1.573571e-01

Outputting figure to mutsig2_images.part000000000148/RNF160.2_5559_70000_0.10873_0.024143_0.15736.png
                gene_name: RNF160
               theta_stop: 0.094 
                    nperm: 70000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.024 
      ci_cons_bounds_left: 0.023 
     ci_cons_bounds_right: 0.025 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 74 percent done.
RNF19A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.684082e-02	ci left: 4.021307e-01	ci right 4.215207e-01	k: 4118	n:10000
KS ci ratio: 1.526929e-02	ci left: 8.615148e-01	ci right 8.748699e-01	k: 8683	n:10000
RNF19A   10000 perm   2 sec   (5723 perm/sec)   p_kst 8.683000e-01   p_cons 4.118000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000148/RNF19A.2_2553_10000_0.8683_0.4118_1.png
                gene_name: RNF19A
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
RNF207
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.643344e-02	ci left: 1.349198e-01	ci right 1.486895e-01	k: 1417	n:10000
Cons ci ratio: 7.532587e-02	ci left: 2.050098e-01	ci right 2.211576e-01	k: 2130	n:10000
KS ci ratio: 1.032853e-01	ci left: 1.193599e-01	ci right 1.324588e-01	k: 1258	n:10000
RNF207   10000 perm   2 sec   (6440 perm/sec)   p_kst 1.258000e-01   p_cons 2.130000e-01   p_joint 1.417000e-01

Joint ci ratio: 2.698887e-02	ci left: 5.063464e-01	ci right 5.202497e-01	k: 10266	n:20000
Cons ci ratio: 5.138405e-02	ci left: 2.195748e-01	ci right 2.312052e-01	k: 4507	n:20000
KS ci ratio: 7.353701e-02	ci left: 1.198066e-01	ci right 1.290029e-01	k: 2487	n:20000
RNF207   20000 perm   4 sec   (5592 perm/sec)   p_kst 1.243500e-01   p_cons 2.253500e-01   p_joint 5.133000e-01

Outputting figure to mutsig2_images.part000000000148/RNF207.2_1973_20000_0.12435_0.22535_0.5133.png
                gene_name: RNF207
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.52 

Current progress: 79 percent done.
RNF216
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.843563e-02	ci left: 8.112097e-01	ci right 8.264042e-01	k: 8189	n:10000
Cons ci ratio: 4.184646e-02	ci left: 4.574819e-01	ci right 4.771372e-01	k: 4673	n:10000
KS ci ratio: 5.946770e-02	ci left: 2.938030e-01	ci right 3.119119e-01	k: 3028	n:10000
RNF216   10000 perm   2 sec   (5475 perm/sec)   p_kst 3.028000e-01   p_cons 4.673000e-01   p_joint 8.189000e-01

Outputting figure to mutsig2_images.part000000000148/RNF216.2_2836_10000_0.3028_0.4673_0.8189.png
                gene_name: RNF216
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 82 percent done.
RNF219
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.701279e-02	ci left: 6.687414e-01	ci right 6.871549e-01	k: 6780	n:10000
Cons ci ratio: 7.154130e-02	ci left: 2.225711e-01	ci right 2.391859e-01	k: 2308	n:10000
KS ci ratio: 6.359997e-02	ci left: 2.664630e-01	ci right 2.840681e-01	k: 2752	n:10000
RNF219   10000 perm   2 sec   (5956 perm/sec)   p_kst 2.752000e-01   p_cons 2.308000e-01   p_joint 6.780000e-01

Outputting figure to mutsig2_images.part000000000148/RNF219.2_2205_10000_0.2752_0.2308_0.678.png
                gene_name: RNF219
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 84 percent done.
RNF5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.306013e+00	ci left: 3.454445e-04	ci right 1.575707e-03	k: 8	n:10000
Cons ci ratio: 7.677370e-01	ci left: 1.618501e-03	ci right 3.688296e-03	k: 25	n:10000
KS ci ratio: 5.003467e-01	ci left: 4.581663e-03	ci right 7.716529e-03	k: 60	n:10000
RNF5   10000 perm   1 sec   (7432 perm/sec)   p_kst 6.000000e-03   p_cons 2.500000e-03   p_joint 8.000000e-04

Joint ci ratio: 1.086832e+00	ci left: 3.100660e-04	ci right 1.047844e-03	k: 12	n:20000
Cons ci ratio: 5.651098e-01	ci left: 1.727187e-03	ci right 3.123791e-03	k: 47	n:20000
KS ci ratio: 3.582663e-01	ci left: 4.885950e-03	ci right 7.061454e-03	k: 118	n:20000
RNF5   20000 perm   3 sec   (6378 perm/sec)   p_kst 5.900000e-03   p_cons 2.350000e-03   p_joint 6.000000e-04

Joint ci ratio: 1.959837e+00	ci left: 2.062288e-05	ci right 2.922143e-04	k: 3	n:30000
Cons ci ratio: 4.582351e-01	ci left: 1.878312e-03	ci right 3.021462e-03	k: 72	n:30000
KS ci ratio: 3.024883e-01	ci left: 4.725427e-03	ci right 6.439129e-03	k: 166	n:30000
RNF5   30000 perm   5 sec   (6013 perm/sec)   p_kst 5.533333e-03   p_cons 2.400000e-03   p_joint 1.000000e-04

Joint ci ratio: 2.263100e+00	ci left: 6.055289e-06	ci right 1.806054e-04	k: 2	n:40000
Cons ci ratio: 3.995980e-01	ci left: 1.921929e-03	ci right 2.902547e-03	k: 95	n:40000
KS ci ratio: 2.605941e-01	ci left: 4.892283e-03	ci right 6.380868e-03	k: 224	n:40000
RNF5   40000 perm   7 sec   (5779 perm/sec)   p_kst 5.600000e-03   p_cons 2.375000e-03   p_joint 5.000000e-05

Joint ci ratio: 6.927359e-01	ci left: 4.212976e-04	ci right 8.799261e-04	k: 31	n:50000
Cons ci ratio: 3.667192e-01	ci left: 1.862912e-03	ci right 2.716522e-03	k: 113	n:50000
KS ci ratio: 2.323571e-01	ci left: 5.002426e-03	ci right 6.335953e-03	k: 282	n:50000
RNF5   50000 perm   9 sec   (5582 perm/sec)   p_kst 5.640000e-03   p_cons 2.260000e-03   p_joint 6.200000e-04

Joint ci ratio: 5.016452e-01	ci left: 7.631894e-04	ci right 1.287013e-03	k: 60	n:60000
Cons ci ratio: 3.240239e-01	ci left: 2.039699e-03	ci right 2.842973e-03	k: 145	n:60000
KS ci ratio: 2.135720e-01	ci left: 4.987021e-03	ci right 6.194892e-03	k: 334	n:60000
RNF5   60000 perm   11 sec   (5419 perm/sec)   p_kst 5.566667e-03   p_cons 2.416667e-03   p_joint 1.000000e-03

Joint ci ratio: 4.249224e-01	ci left: 9.572764e-04	ci right 1.485469e-03	k: 84	n:70000
Cons ci ratio: 3.038879e-01	ci left: 2.011533e-03	ci right 2.744978e-03	k: 165	n:70000
KS ci ratio: 2.000152e-01	ci left: 4.911258e-03	ci right 6.016058e-03	k: 381	n:70000
RNF5   70000 perm   13 sec   (5274 perm/sec)   p_kst 5.442857e-03   p_cons 2.357143e-03   p_joint 1.200000e-03

Joint ci ratio: 2.985739e-01	ci left: 1.829396e-03	ci right 2.482550e-03	k: 171	n:80000
Cons ci ratio: 2.840470e-01	ci left: 2.037996e-03	ci right 2.723889e-03	k: 189	n:80000
KS ci ratio: 1.867902e-01	ci left: 4.963500e-03	ci right 5.997860e-03	k: 437	n:80000
RNF5   80000 perm   16 sec   (5136 perm/sec)   p_kst 5.462500e-03   p_cons 2.362500e-03   p_joint 2.137500e-03

Joint ci ratio: 2.796934e-01	ci left: 1.873483e-03	ci right 2.492638e-03	k: 195	n:90000
Cons ci ratio: 2.664005e-01	ci left: 2.080530e-03	ci right 2.729985e-03	k: 215	n:90000
KS ci ratio: 1.777011e-01	ci left: 4.899790e-03	ci right 5.865845e-03	k: 483	n:90000
RNF5   90000 perm   18 sec   (5017 perm/sec)   p_kst 5.366667e-03   p_cons 2.388889e-03   p_joint 2.166667e-03

Joint ci ratio: 2.157597e-01	ci left: 2.935092e-03	ci right 3.654194e-03	k: 328	n:100000
Cons ci ratio: 2.516808e-01	ci left: 2.115612e-03	ci right 2.733814e-03	k: 241	n:100000
KS ci ratio: 1.682330e-01	ci left: 4.945590e-03	ci right 5.863457e-03	k: 539	n:100000
RNF5   100000 perm   20 sec   (4902 perm/sec)   p_kst 5.390000e-03   p_cons 2.410000e-03   p_joint 3.280000e-03

Joint ci ratio: 2.045596e-01	ci left: 2.986945e-03	ci right 3.676016e-03	k: 365	n:110000
Cons ci ratio: 2.387131e-01	ci left: 2.153671e-03	ci right 2.745776e-03	k: 268	n:110000
KS ci ratio: 1.612247e-01	ci left: 4.914364e-03	ci right 5.784757e-03	k: 587	n:110000
RNF5   110000 perm   23 sec   (4792 perm/sec)   p_kst 5.336364e-03   p_cons 2.436364e-03   p_joint 3.318182e-03

Joint ci ratio: 1.956723e-01	ci left: 3.007178e-03	ci right 3.667185e-03	k: 399	n:120000
Cons ci ratio: 2.295147e-01	ci left: 2.146781e-03	ci right 2.711028e-03	k: 290	n:120000
KS ci ratio: 1.552706e-01	ci left: 4.872981e-03	ci right 5.701204e-03	k: 633	n:120000
RNF5   120000 perm   26 sec   (4685 perm/sec)   p_kst 5.275000e-03   p_cons 2.416667e-03   p_joint 3.325000e-03

Joint ci ratio: 1.880685e-01	ci left: 3.017513e-03	ci right 3.651114e-03	k: 432	n:130000
Cons ci ratio: 2.209502e-01	ci left: 2.148589e-03	ci right 2.689373e-03	k: 313	n:130000
KS ci ratio: 1.487264e-01	ci left: 4.919935e-03	ci right 5.717760e-03	k: 690	n:130000
RNF5   130000 perm   28 sec   (4594 perm/sec)   p_kst 5.307692e-03   p_cons 2.407692e-03   p_joint 3.323077e-03

Joint ci ratio: 1.795559e-01	ci left: 3.088188e-03	ci right 3.704091e-03	k: 474	n:140000
Cons ci ratio: 2.101749e-01	ci left: 2.218122e-03	ci right 2.745679e-03	k: 346	n:140000
KS ci ratio: 1.431380e-01	ci left: 4.947032e-03	ci right 5.716532e-03	k: 745	n:140000
RNF5   140000 perm   31 sec   (4499 perm/sec)   p_kst 5.321429e-03   p_cons 2.471429e-03   p_joint 3.385714e-03

Joint ci ratio: 1.734553e-01	ci left: 3.098965e-03	ci right 3.693819e-03	k: 508	n:150000
Cons ci ratio: 2.029897e-01	ci left: 2.228295e-03	ci right 2.737907e-03	k: 371	n:150000
KS ci ratio: 1.387465e-01	ci left: 4.925943e-03	ci right 5.666711e-03	k: 793	n:150000
RNF5   150000 perm   34 sec   (4407 perm/sec)   p_kst 5.286667e-03   p_cons 2.473333e-03   p_joint 3.386667e-03

Joint ci ratio: 1.688759e-01	ci left: 3.072780e-03	ci right 3.645450e-03	k: 536	n:160000
Cons ci ratio: 1.974942e-01	ci left: 2.213695e-03	ci right 2.704612e-03	k: 392	n:160000
KS ci ratio: 1.348969e-01	ci left: 4.895725e-03	ci right 5.609883e-03	k: 839	n:160000
RNF5   160000 perm   37 sec   (4322 perm/sec)   p_kst 5.243750e-03   p_cons 2.450000e-03   p_joint 3.350000e-03

Joint ci ratio: 1.643493e-01	ci left: 3.061139e-03	ci right 3.614836e-03	k: 566	n:170000
Cons ci ratio: 1.933608e-01	ci left: 2.178581e-03	ci right 2.650409e-03	k: 409	n:170000
KS ci ratio: 1.314255e-01	ci left: 4.863624e-03	ci right 5.553416e-03	k: 884	n:170000
RNF5   170000 perm   40 sec   (4240 perm/sec)   p_kst 5.200000e-03   p_cons 2.405882e-03   p_joint 3.329412e-03

Joint ci ratio: 1.607093e-01	ci left: 3.029641e-03	ci right 3.564331e-03	k: 592	n:180000
Cons ci ratio: 1.903723e-01	ci left: 2.126296e-03	ci right 2.578859e-03	k: 422	n:180000
KS ci ratio: 1.282090e-01	ci left: 4.835299e-03	ci right 5.503013e-03	k: 929	n:180000
RNF5   180000 perm   43 sec   (4163 perm/sec)   p_kst 5.161111e-03   p_cons 2.344444e-03   p_joint 3.288889e-03

Joint ci ratio: 1.564160e-01	ci left: 3.036981e-03	ci right 3.557304e-03	k: 625	n:190000
Cons ci ratio: 1.853989e-01	ci left: 2.129745e-03	ci right 2.569869e-03	k: 445	n:190000
KS ci ratio: 1.241974e-01	ci left: 4.891737e-03	ci right 5.544552e-03	k: 990	n:190000
RNF5   190000 perm   46 sec   (4086 perm/sec)   p_kst 5.210526e-03   p_cons 2.342105e-03   p_joint 3.289474e-03

Joint ci ratio: 1.641006e-01	ci left: 2.611507e-03	ci right 3.083086e-03	k: 568	n:200000
Cons ci ratio: 1.823616e-01	ci left: 2.094802e-03	ci right 2.519829e-03	k: 460	n:200000
KS ci ratio: 1.207134e-01	ci left: 4.928273e-03	ci right 5.566196e-03	k: 1048	n:200000
RNF5   200000 perm   50 sec   (4014 perm/sec)   p_kst 5.240000e-03   p_cons 2.300000e-03   p_joint 2.840000e-03

Joint ci ratio: 1.602063e-01	ci left: 2.615073e-03	ci right 3.075011e-03	k: 596	n:210000
Cons ci ratio: 1.779759e-01	ci left: 2.099635e-03	ci right 2.514294e-03	k: 483	n:210000
KS ci ratio: 1.176138e-01	ci left: 4.952315e-03	ci right 5.575747e-03	k: 1104	n:210000
RNF5   210000 perm   53 sec   (3945 perm/sec)   p_kst 5.257143e-03   p_cons 2.300000e-03   p_joint 2.838095e-03

Joint ci ratio: 1.568286e-01	ci left: 2.609699e-03	ci right 3.058104e-03	k: 622	n:220000
Cons ci ratio: 1.744102e-01	ci left: 2.091096e-03	ci right 2.494923e-03	k: 503	n:220000
KS ci ratio: 1.147911e-01	ci left: 4.969946e-03	ci right 5.579564e-03	k: 1159	n:220000
RNF5   220000 perm   57 sec   (3877 perm/sec)   p_kst 5.268182e-03   p_cons 2.286364e-03   p_joint 2.827273e-03

Joint ci ratio: 1.537747e-01	ci left: 2.600705e-03	ci right 3.038061e-03	k: 647	n:230000
Cons ci ratio: 1.717086e-01	ci left: 2.066729e-03	ci right 2.459027e-03	k: 519	n:230000
KS ci ratio: 1.124417e-01	ci left: 4.960849e-03	ci right 5.556072e-03	k: 1208	n:230000
RNF5   230000 perm   60 sec   (3811 perm/sec)   p_kst 5.252174e-03   p_cons 2.256522e-03   p_joint 2.813043e-03

Joint ci ratio: 1.506682e-01	ci left: 2.600557e-03	ci right 3.028257e-03	k: 674	n:240000
Cons ci ratio: 1.681878e-01	ci left: 2.068383e-03	ci right 2.452129e-03	k: 541	n:240000
KS ci ratio: 1.104518e-01	ci left: 4.932366e-03	ci right 5.513015e-03	k: 1252	n:240000
RNF5   240000 perm   64 sec   (3749 perm/sec)   p_kst 5.216667e-03   p_cons 2.254167e-03   p_joint 2.808333e-03

Joint ci ratio: 1.482732e-01	ci left: 2.581242e-03	ci right 2.998418e-03	k: 696	n:250000
Cons ci ratio: 1.653164e-01	ci left: 2.058475e-03	ci right 2.433214e-03	k: 560	n:250000
KS ci ratio: 1.078145e-01	ci left: 4.976308e-03	ci right 5.547254e-03	k: 1314	n:250000
RNF5   250000 perm   68 sec   (3687 perm/sec)   p_kst 5.256000e-03   p_cons 2.240000e-03   p_joint 2.784000e-03

Joint ci ratio: 1.449812e-01	ci left: 2.600527e-03	ci right 3.010681e-03	k: 728	n:260000
Cons ci ratio: 1.618893e-01	ci left: 2.067833e-03	ci right 2.435712e-03	k: 584	n:260000
KS ci ratio: 1.055116e-01	ci left: 5.002041e-03	ci right 5.562920e-03	k: 1372	n:260000
RNF5   260000 perm   72 sec   (3627 perm/sec)   p_kst 5.276923e-03   p_cons 2.246154e-03   p_joint 2.800000e-03

Joint ci ratio: 1.421805e-01	ci left: 2.607761e-03	ci right 3.010437e-03	k: 757	n:270000
Cons ci ratio: 1.589286e-01	ci left: 2.069457e-03	ci right 2.430249e-03	k: 606	n:270000
KS ci ratio: 1.034593e-01	ci left: 5.015162e-03	ci right 5.565910e-03	k: 1427	n:270000
RNF5   270000 perm   76 sec   (3573 perm/sec)   p_kst 5.285185e-03   p_cons 2.244444e-03   p_joint 2.803704e-03

Joint ci ratio: 1.385684e-01	ci left: 2.652471e-03	ci right 3.050787e-03	k: 797	n:280000
Cons ci ratio: 1.551390e-01	ci left: 2.098483e-03	ci right 2.454801e-03	k: 636	n:280000
KS ci ratio: 1.015223e-01	ci left: 5.027444e-03	ci right 5.568587e-03	k: 1482	n:280000
RNF5   280000 perm   80 sec   (3519 perm/sec)   p_kst 5.292857e-03   p_cons 2.271429e-03   p_joint 2.846429e-03

Joint ci ratio: 1.365316e-01	ci left: 2.640916e-03	ci right 3.031194e-03	k: 821	n:290000
Cons ci ratio: 1.528768e-01	ci left: 2.089113e-03	ci right 2.438194e-03	k: 655	n:290000
KS ci ratio: 9.978809e-02	ci left: 5.028880e-03	ci right 5.560390e-03	k: 1534	n:290000
RNF5   290000 perm   84 sec   (3467 perm/sec)   p_kst 5.289655e-03   p_cons 2.258621e-03   p_joint 2.831034e-03

Joint ci ratio: 1.343433e-01	ci left: 2.639836e-03	ci right 3.023202e-03	k: 848	n:300000
Cons ci ratio: 1.508228e-01	ci left: 2.077195e-03	ci right 2.419200e-03	k: 673	n:300000
KS ci ratio: 9.783041e-02	ci left: 5.062815e-03	ci right 5.586811e-03	k: 1596	n:300000
RNF5   300000 perm   88 sec   (3416 perm/sec)   p_kst 5.320000e-03   p_cons 2.243333e-03   p_joint 2.826667e-03

Joint ci ratio: 1.324847e-01	ci left: 2.629514e-03	ci right 3.005682e-03	k: 872	n:310000
Cons ci ratio: 1.486343e-01	ci left: 2.072288e-03	ci right 2.408094e-03	k: 693	n:310000
KS ci ratio: 9.630510e-02	ci left: 5.060020e-03	ci right 5.575101e-03	k: 1647	n:310000
RNF5   310000 perm   92 sec   (3367 perm/sec)   p_kst 5.312903e-03   p_cons 2.235484e-03   p_joint 2.812903e-03

Joint ci ratio: 1.301206e-01	ci left: 2.644059e-03	ci right 3.015036e-03	k: 904	n:320000
Cons ci ratio: 1.461287e-01	ci left: 2.079764e-03	ci right 2.410604e-03	k: 717	n:320000
KS ci ratio: 9.493329e-02	ci left: 5.048306e-03	ci right 5.554467e-03	k: 1695	n:320000
RNF5   320000 perm   96 sec   (3318 perm/sec)   p_kst 5.296875e-03   p_cons 2.240625e-03   p_joint 2.825000e-03

Joint ci ratio: 1.277420e-01	ci left: 2.663645e-03	ci right 3.030021e-03	k: 938	n:330000
Cons ci ratio: 1.435519e-01	ci left: 2.092674e-03	ci right 2.419195e-03	k: 743	n:330000
KS ci ratio: 9.361847e-02	ci left: 5.037350e-03	ci right 5.535034e-03	k: 1743	n:330000
RNF5   330000 perm   101 sec   (3273 perm/sec)   p_kst 5.281818e-03   p_cons 2.251515e-03   p_joint 2.842424e-03

Joint ci ratio: 1.266698e-01	ci left: 2.630861e-03	ci right 2.989462e-03	k: 954	n:340000
Cons ci ratio: 1.424102e-01	ci left: 2.065154e-03	ci right 2.384601e-03	k: 755	n:340000
KS ci ratio: 9.233091e-02	ci left: 5.029959e-03	ci right 5.519708e-03	k: 1792	n:340000
RNF5   340000 perm   105 sec   (3228 perm/sec)   p_kst 5.270588e-03   p_cons 2.220588e-03   p_joint 2.805882e-03

Joint ci ratio: 1.244723e-01	ci left: 2.649786e-03	ci right 3.004239e-03	k: 988	n:350000
Cons ci ratio: 1.402920e-01	ci left: 2.069541e-03	ci right 2.384506e-03	k: 778	n:350000
KS ci ratio: 9.111992e-02	ci left: 5.020241e-03	ci right 5.502291e-03	k: 1840	n:350000
RNF5   350000 perm   110 sec   (3182 perm/sec)   p_kst 5.257143e-03   p_cons 2.222857e-03   p_joint 2.822857e-03

Joint ci ratio: 1.222656e-01	ci left: 2.673097e-03	ci right 3.023870e-03	k: 1024	n:360000
Cons ci ratio: 1.377501e-01	ci left: 2.089809e-03	ci right 2.401623e-03	k: 807	n:360000
KS ci ratio: 8.971695e-02	ci left: 5.038260e-03	ci right 5.514201e-03	k: 1898	n:360000
RNF5   360000 perm   115 sec   (3139 perm/sec)   p_kst 5.272222e-03   p_cons 2.241667e-03   p_joint 2.844444e-03

Joint ci ratio: 1.208596e-01	ci left: 2.663743e-03	ci right 3.008981e-03	k: 1048	n:370000
Cons ci ratio: 1.360767e-01	ci left: 2.085530e-03	ci right 2.392619e-03	k: 827	n:370000
KS ci ratio: 8.824096e-02	ci left: 5.071219e-03	ci right 5.541985e-03	k: 1962	n:370000
RNF5   370000 perm   119 sec   (3098 perm/sec)   p_kst 5.302703e-03   p_cons 2.235135e-03   p_joint 2.832432e-03

Joint ci ratio: 1.191674e-01	ci left: 2.670222e-03	ci right 3.011113e-03	k: 1078	n:380000
Cons ci ratio: 1.343043e-01	ci left: 2.086584e-03	ci right 2.389507e-03	k: 849	n:380000
KS ci ratio: 8.696498e-02	ci left: 5.087055e-03	ci right 5.552116e-03	k: 2020	n:380000
RNF5   380000 perm   124 sec   (3057 perm/sec)   p_kst 5.315789e-03   p_cons 2.234211e-03   p_joint 2.836842e-03

Joint ci ratio: 1.172267e-01	ci left: 2.691335e-03	ci right 3.028939e-03	k: 1114	n:390000
Cons ci ratio: 1.322955e-01	ci left: 2.097526e-03	ci right 2.397126e-03	k: 875	n:390000
KS ci ratio: 8.578428e-02	ci left: 5.097107e-03	ci right 5.556444e-03	k: 2076	n:390000
RNF5   390000 perm   129 sec   (3017 perm/sec)   p_kst 5.323077e-03   p_cons 2.243590e-03   p_joint 2.856410e-03

Joint ci ratio: 1.157312e-01	ci left: 2.694440e-03	ci right 3.027827e-03	k: 1143	n:400000
Cons ci ratio: 1.305922e-01	ci left: 2.100697e-03	ci right 2.396587e-03	k: 898	n:400000
KS ci ratio: 8.463047e-02	ci left: 5.109144e-03	ci right 5.563067e-03	k: 2133	n:400000
RNF5   400000 perm   134 sec   (2979 perm/sec)   p_kst 5.332500e-03   p_cons 2.245000e-03   p_joint 2.857500e-03

Joint ci ratio: 1.144385e-01	ci left: 2.690310e-03	ci right 3.019217e-03	k: 1169	n:410000
Cons ci ratio: 1.288829e-01	ci left: 2.106098e-03	ci right 2.398569e-03	k: 922	n:410000
KS ci ratio: 8.373357e-02	ci left: 5.094362e-03	ci right 5.541941e-03	k: 2179	n:410000
RNF5   410000 perm   139 sec   (2942 perm/sec)   p_kst 5.314634e-03   p_cons 2.248780e-03   p_joint 2.851220e-03

Joint ci ratio: 1.133307e-01	ci left: 2.679457e-03	ci right 3.003653e-03	k: 1192	n:420000
Cons ci ratio: 1.275770e-01	ci left: 2.099739e-03	ci right 2.388149e-03	k: 941	n:420000
KS ci ratio: 8.252981e-02	ci left: 5.122284e-03	ci right 5.565535e-03	k: 2243	n:420000
RNF5   420000 perm   145 sec   (2906 perm/sec)   p_kst 5.340476e-03   p_cons 2.240476e-03   p_joint 2.838095e-03

Joint ci ratio: 1.115211e-01	ci left: 2.705293e-03	ci right 3.027045e-03	k: 1231	n:430000
Cons ci ratio: 1.255270e-01	ci left: 2.120720e-03	ci right 2.406983e-03	k: 972	n:430000
KS ci ratio: 8.128802e-02	ci left: 5.160343e-03	ci right 5.599850e-03	k: 2312	n:430000
RNF5   430000 perm   150 sec   (2870 perm/sec)   p_kst 5.376744e-03   p_cons 2.260465e-03   p_joint 2.862791e-03

Joint ci ratio: 1.102751e-01	ci left: 2.705680e-03	ci right 3.023650e-03	k: 1259	n:440000
Cons ci ratio: 1.242568e-01	ci left: 2.116556e-03	ci right 2.399153e-03	k: 992	n:440000
KS ci ratio: 8.047514e-02	ci left: 5.147719e-03	ci right 5.581561e-03	k: 2359	n:440000
RNF5   440000 perm   155 sec   (2834 perm/sec)   p_kst 5.361364e-03   p_cons 2.254545e-03   p_joint 2.861364e-03

Joint ci ratio: 1.091976e-01	ci left: 2.699584e-03	ci right 3.013538e-03	k: 1284	n:450000
Cons ci ratio: 1.227817e-01	ci left: 2.121207e-03	ci right 2.400819e-03	k: 1016	n:450000
KS ci ratio: 7.971947e-02	ci left: 5.131321e-03	ci right 5.559531e-03	k: 2404	n:450000
RNF5   450000 perm   161 sec   (2799 perm/sec)   p_kst 5.342222e-03   p_cons 2.257778e-03   p_joint 2.853333e-03

Joint ci ratio: 1.078214e-01	ci left: 2.710690e-03	ci right 3.021711e-03	k: 1317	n:460000
Cons ci ratio: 1.213580e-01	ci left: 2.125675e-03	ci right 2.402393e-03	k: 1040	n:460000
KS ci ratio: 7.901712e-02	ci left: 5.111391e-03	ci right 5.534007e-03	k: 2447	n:460000
RNF5   460000 perm   166 sec   (2766 perm/sec)   p_kst 5.319565e-03   p_cons 2.260870e-03   p_joint 2.863043e-03

Joint ci ratio: 1.066544e-01	ci left: 2.713063e-03	ci right 3.020775e-03	k: 1346	n:470000
Cons ci ratio: 1.200957e-01	ci left: 2.125843e-03	ci right 2.399500e-03	k: 1062	n:470000
KS ci ratio: 7.801876e-02	ci left: 5.134051e-03	ci right 5.552934e-03	k: 2510	n:470000
RNF5   470000 perm   172 sec   (2734 perm/sec)   p_kst 5.340426e-03   p_cons 2.259574e-03   p_joint 2.863830e-03

Joint ci ratio: 1.052945e-01	ci left: 2.727526e-03	ci right 3.032690e-03	k: 1381	n:480000
Cons ci ratio: 1.184351e-01	ci left: 2.142191e-03	ci right 2.413872e-03	k: 1092	n:480000
KS ci ratio: 7.710248e-02	ci left: 5.149669e-03	ci right 5.564670e-03	k: 2570	n:480000
RNF5   480000 perm   178 sec   (2704 perm/sec)   p_kst 5.354167e-03   p_cons 2.275000e-03   p_joint 2.877083e-03

Joint ci ratio: 1.045417e-01	ci left: 2.711607e-03	ci right 3.012687e-03	k: 1401	n:490000
Cons ci ratio: 1.175254e-01	ci left: 2.132142e-03	ci right 2.400328e-03	k: 1109	n:490000
KS ci ratio: 7.633452e-02	ci left: 5.148660e-03	ci right 5.559263e-03	k: 2622	n:490000
RNF5   490000 perm   183 sec   (2673 perm/sec)   p_kst 5.351020e-03   p_cons 2.263265e-03   p_joint 2.859184e-03

Joint ci ratio: 1.032961e-01	ci left: 2.723608e-03	ci right 3.022199e-03	k: 1435	n:500000
Cons ci ratio: 1.162749e-01	ci left: 2.136096e-03	ci right 2.401724e-03	k: 1133	n:500000
KS ci ratio: 7.557485e-02	ci left: 5.149673e-03	ci right 5.556091e-03	k: 2675	n:500000
RNF5   500000 perm   189 sec   (2643 perm/sec)   p_kst 5.350000e-03   p_cons 2.266000e-03   p_joint 2.870000e-03

Joint ci ratio: 1.024440e-01	ci left: 2.716051e-03	ci right 3.011210e-03	k: 1459	n:510000
Cons ci ratio: 1.153635e-01	ci left: 2.128483e-03	ci right 2.390948e-03	k: 1151	n:510000
KS ci ratio: 7.494794e-02	ci left: 5.135273e-03	ci right 5.537045e-03	k: 2720	n:510000
RNF5   510000 perm   195 sec   (2614 perm/sec)   p_kst 5.333333e-03   p_cons 2.256863e-03   p_joint 2.860784e-03

Joint ci ratio: 1.018885e-01	ci left: 2.693801e-03	ci right 2.984859e-03	k: 1475	n:520000
Cons ci ratio: 1.146698e-01	ci left: 2.113698e-03	ci right 2.372667e-03	k: 1165	n:520000
KS ci ratio: 7.443113e-02	ci left: 5.108227e-03	ci right 5.505008e-03	k: 2758	n:520000
RNF5   520000 perm   201 sec   (2587 perm/sec)   p_kst 5.303846e-03   p_cons 2.240385e-03   p_joint 2.836538e-03

Joint ci ratio: 1.008684e-01	ci left: 2.698144e-03	ci right 2.986579e-03	k: 1505	n:530000
Cons ci ratio: 1.135552e-01	ci left: 2.115975e-03	ci right 2.372534e-03	k: 1188	n:530000
KS ci ratio: 7.376593e-02	ci left: 5.104436e-03	ci right 5.497228e-03	k: 2808	n:530000
RNF5   530000 perm   207 sec   (2559 perm/sec)   p_kst 5.298113e-03   p_cons 2.241509e-03   p_joint 2.839623e-03

Joint ci ratio: 9.984580e-02	ci left: 2.704145e-03	ci right 2.990119e-03	k: 1536	n:540000
Cons ci ratio: 1.125191e-01	ci left: 2.116379e-03	ci right 2.370490e-03	k: 1210	n:540000
KS ci ratio: 7.290069e-02	ci left: 5.131711e-03	ci right 5.521773e-03	k: 2875	n:540000
RNF5   540000 perm   213 sec   (2531 perm/sec)   p_kst 5.324074e-03   p_cons 2.240741e-03   p_joint 2.844444e-03

Joint ci ratio: 9.904387e-02	ci left: 2.699302e-03	ci right 2.982339e-03	k: 1561	n:550000
Cons ci ratio: 1.116470e-01	ci left: 2.111476e-03	ci right 2.362904e-03	k: 1229	n:550000
KS ci ratio: 7.237489e-02	ci left: 5.113382e-03	ci right 5.499130e-03	k: 2917	n:550000
RNF5   550000 perm   220 sec   (2505 perm/sec)   p_kst 5.303636e-03   p_cons 2.234545e-03   p_joint 2.838182e-03

Joint ci ratio: 9.801352e-02	ci left: 2.708577e-03	ci right 2.989462e-03	k: 1594	n:560000
Cons ci ratio: 1.104850e-01	ci left: 2.118910e-03	ci right 2.368427e-03	k: 1255	n:560000
KS ci ratio: 7.164164e-02	ci left: 5.127287e-03	ci right 5.510002e-03	k: 2977	n:560000
RNF5   560000 perm   226 sec   (2479 perm/sec)   p_kst 5.316071e-03   p_cons 2.241071e-03   p_joint 2.846429e-03

Joint ci ratio: 9.716442e-02	ci left: 2.708982e-03	ci right 2.987337e-03	k: 1622	n:570000
Cons ci ratio: 1.094870e-01	ci left: 2.120978e-03	ci right 2.368336e-03	k: 1278	n:570000
KS ci ratio: 7.071991e-02	ci left: 5.171745e-03	ci right 5.552608e-03	k: 3055	n:570000
RNF5   570000 perm   232 sec   (2453 perm/sec)   p_kst 5.359649e-03   p_cons 2.242105e-03   p_joint 2.845614e-03

Joint ci ratio: 9.601676e-02	ci left: 2.727894e-03	ci right 3.004695e-03	k: 1661	n:580000
Cons ci ratio: 1.081830e-01	ci left: 2.136403e-03	ci right 2.382404e-03	k: 1309	n:580000
KS ci ratio: 7.011456e-02	ci left: 5.172347e-03	ci right 5.549861e-03	k: 3108	n:580000
RNF5   580000 perm   239 sec   (2426 perm/sec)   p_kst 5.358621e-03   p_cons 2.256897e-03   p_joint 2.863793e-03

Joint ci ratio: 9.499287e-02	ci left: 2.741219e-03	ci right 3.016241e-03	k: 1697	n:590000
Cons ci ratio: 1.070847e-01	ci left: 2.144724e-03	ci right 2.389018e-03	k: 1336	n:590000
KS ci ratio: 6.942524e-02	ci left: 5.187933e-03	ci right 5.562712e-03	k: 3170	n:590000
RNF5   590000 perm   246 sec   (2400 perm/sec)   p_kst 5.372881e-03   p_cons 2.264407e-03   p_joint 2.876271e-03

Joint ci ratio: 9.413726e-02	ci left: 2.745977e-03	ci right 3.018858e-03	k: 1728	n:600000
Cons ci ratio: 1.059802e-01	ci left: 2.154403e-03	ci right 2.397110e-03	k: 1364	n:600000
KS ci ratio: 6.879865e-02	ci left: 5.196464e-03	ci right 5.568336e-03	k: 3228	n:600000
RNF5   600000 perm   253 sec   (2375 perm/sec)   p_kst 5.380000e-03   p_cons 2.273333e-03   p_joint 2.880000e-03

Joint ci ratio: 9.362501e-02	ci left: 2.731376e-03	ci right 3.001248e-03	k: 1747	n:610000
Cons ci ratio: 1.053269e-01	ci left: 2.146216e-03	ci right 2.386419e-03	k: 1381	n:610000
KS ci ratio: 6.831422e-02	ci left: 5.185392e-03	ci right 5.553756e-03	k: 3274	n:610000
RNF5   610000 perm   259 sec   (2352 perm/sec)   p_kst 5.367213e-03   p_cons 2.263934e-03   p_joint 2.863934e-03

Joint ci ratio: 9.296286e-02	ci left: 2.726703e-03	ci right 2.994104e-03	k: 1772	n:620000
Cons ci ratio: 1.046480e-01	ci left: 2.139870e-03	ci right 2.377723e-03	k: 1399	n:620000
KS ci ratio: 6.771698e-02	ci left: 5.193715e-03	ci right 5.559317e-03	k: 3332	n:620000
RNF5   620000 perm   266 sec   (2327 perm/sec)   p_kst 5.374194e-03   p_cons 2.256452e-03   p_joint 2.858065e-03

Joint ci ratio: 9.200717e-02	ci left: 2.740795e-03	ci right 3.006666e-03	k: 1809	n:630000
Cons ci ratio: 1.033990e-01	ci left: 2.158469e-03	ci right 2.395352e-03	k: 1433	n:630000
KS ci ratio: 6.709536e-02	ci left: 5.208030e-03	ci right 5.571144e-03	k: 3394	n:630000
RNF5   630000 perm   273 sec   (2304 perm/sec)   p_kst 5.387302e-03   p_cons 2.274603e-03   p_joint 2.871429e-03

Joint ci ratio: 9.135358e-02	ci left: 2.737664e-03	ci right 3.001243e-03	k: 1835	n:640000
Cons ci ratio: 1.026856e-01	ci left: 2.155187e-03	ci right 2.389980e-03	k: 1453	n:640000
KS ci ratio: 6.655834e-02	ci left: 5.211156e-03	ci right 5.571468e-03	k: 3449	n:640000
RNF5   640000 perm   281 sec   (2282 perm/sec)   p_kst 5.389062e-03   p_cons 2.270313e-03   p_joint 2.867187e-03

Joint ci ratio: 9.061616e-02	ci left: 2.740650e-03	ci right 3.002274e-03	k: 1865	n:650000
Cons ci ratio: 1.019175e-01	ci left: 2.155010e-03	ci right 2.387923e-03	k: 1475	n:650000
KS ci ratio: 6.603400e-02	ci left: 5.214198e-03	ci right 5.571771e-03	k: 3504	n:650000
RNF5   650000 perm   288 sec   (2260 perm/sec)   p_kst 5.390769e-03   p_cons 2.269231e-03   p_joint 2.869231e-03

Joint ci ratio: 8.980136e-02	ci left: 2.749478e-03	ci right 3.009461e-03	k: 1899	n:660000
Cons ci ratio: 1.009976e-01	ci left: 2.162230e-03	ci right 2.393688e-03	k: 1502	n:660000
KS ci ratio: 6.546643e-02	ci left: 5.226100e-03	ci right 5.581292e-03	k: 3565	n:660000
RNF5   660000 perm   295 sec   (2238 perm/sec)   p_kst 5.401515e-03   p_cons 2.275758e-03   p_joint 2.877273e-03

Joint ci ratio: 8.912377e-02	ci left: 2.750756e-03	ci right 3.008796e-03	k: 1928	n:670000
Cons ci ratio: 1.002007e-01	ci left: 2.164878e-03	ci right 2.394683e-03	k: 1526	n:670000
KS ci ratio: 6.485035e-02	ci left: 5.247940e-03	ci right 5.601133e-03	k: 3633	n:670000
RNF5   670000 perm   302 sec   (2217 perm/sec)   p_kst 5.422388e-03   p_cons 2.277612e-03   p_joint 2.877612e-03

Joint ci ratio: 8.855204e-02	ci left: 2.746252e-03	ci right 3.002130e-03	k: 1953	n:680000
Cons ci ratio: 9.955109e-02	ci left: 2.161718e-03	ci right 2.389614e-03	k: 1546	n:680000
KS ci ratio: 6.437384e-02	ci left: 5.248893e-03	ci right 5.599458e-03	k: 3687	n:680000
RNF5   680000 perm   310 sec   (2196 perm/sec)   p_kst 5.422059e-03   p_cons 2.273529e-03   p_joint 2.872059e-03

Outputting figure to mutsig2_images.part000000000148/RNF5.2_567_680000_0.0054221_0.0022735_0.0028721.png
                gene_name: RNF5
               theta_stop: 0.100 
                    nperm: 680000 
                     p_ks: 0.0054 
        ci_ks_bounds_left: 0.0052 
       ci_ks_bounds_right: 0.0056 
                   p_cons: 0.0023 
      ci_cons_bounds_left: 0.0022 
     ci_cons_bounds_right: 0.0024 
                  p_joint: 0.0029 
     ci_joint_bounds_left: 0.0027 
    ci_joint_bounds_right: 0.0030 

Current progress: 87 percent done.
RNF8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.268333e-01	ci left: 1.861361e-03	ci right 4.044256e-03	k: 28	n:10000
Cons ci ratio: 2.855121e-01	ci left: 1.585693e-02	ci right 2.122875e-02	k: 184	n:10000
KS ci ratio: 6.918207e-01	ci left: 2.107242e-03	ci right 4.397341e-03	k: 31	n:10000
RNF8   10000 perm   2 sec   (6284 perm/sec)   p_kst 3.100000e-03   p_cons 1.840000e-02   p_joint 2.800000e-03

Joint ci ratio: 3.387667e-01	ci left: 5.525009e-03	ci right 7.821951e-03	k: 132	n:20000
Cons ci ratio: 1.962908e-01	ci left: 1.762875e-02	ci right 2.151270e-02	k: 390	n:20000
KS ci ratio: 5.011261e-01	ci left: 2.290073e-03	ci right 3.859930e-03	k: 60	n:20000
RNF8   20000 perm   4 sec   (5510 perm/sec)   p_kst 3.000000e-03   p_cons 1.950000e-02   p_joint 6.600000e-03

Joint ci ratio: 2.271026e-01	ci left: 8.716294e-03	ci right 1.098015e-02	k: 294	n:30000
Cons ci ratio: 1.588280e-01	ci left: 1.831759e-02	ci right 2.150967e-02	k: 596	n:30000
KS ci ratio: 3.818765e-01	ci left: 2.833370e-03	ci right 4.198905e-03	k: 104	n:30000
RNF8   30000 perm   6 sec   (5216 perm/sec)   p_kst 3.466667e-03   p_cons 1.986667e-02   p_joint 9.800000e-03

Joint ci ratio: 1.914221e-01	ci left: 9.381360e-03	ci right 1.139067e-02	k: 414	n:40000
Cons ci ratio: 1.383498e-01	ci left: 1.831230e-02	ci right 2.105806e-02	k: 786	n:40000
KS ci ratio: 3.307161e-01	ci left: 2.922113e-03	ci right 4.101780e-03	k: 139	n:40000
RNF8   40000 perm   8 sec   (5033 perm/sec)   p_kst 3.475000e-03   p_cons 1.965000e-02   p_joint 1.035000e-02

Joint ci ratio: 1.700170e-01	ci left: 9.625067e-03	ci right 1.143244e-02	k: 525	n:50000
Cons ci ratio: 1.220928e-01	ci left: 1.896539e-02	ci right 2.145076e-02	k: 1009	n:50000
KS ci ratio: 3.028287e-01	ci left: 2.834815e-03	ci right 3.864181e-03	k: 166	n:50000
RNF8   50000 perm   10 sec   (4884 perm/sec)   p_kst 3.320000e-03   p_cons 2.018000e-02   p_joint 1.050000e-02

Joint ci ratio: 1.540002e-01	ci left: 9.860094e-03	ci right 1.152108e-02	k: 640	n:60000
Cons ci ratio: 1.114551e-01	ci left: 1.907302e-02	ci right 2.134039e-02	k: 1211	n:60000
KS ci ratio: 2.733143e-01	ci left: 2.950057e-03	ci right 3.898978e-03	k: 204	n:60000
RNF8   60000 perm   13 sec   (4764 perm/sec)   p_kst 3.400000e-03   p_cons 2.018333e-02   p_joint 1.066667e-02

Joint ci ratio: 1.409503e-01	ci left: 1.015778e-02	ci right 1.171173e-02	k: 764	n:70000
Cons ci ratio: 1.033368e-01	ci left: 1.910098e-02	ci right 2.119621e-02	k: 1409	n:70000
KS ci ratio: 2.464902e-01	ci left: 3.156457e-03	ci right 4.056892e-03	k: 251	n:70000
RNF8   70000 perm   15 sec   (4655 perm/sec)   p_kst 3.585714e-03   p_cons 2.012857e-02   p_joint 1.091429e-02

Joint ci ratio: 1.313381e-01	ci left: 1.028876e-02	ci right 1.174703e-02	k: 880	n:80000
Cons ci ratio: 9.628021e-02	ci left: 1.932174e-02	ci right 2.128827e-02	k: 1623	n:80000
KS ci ratio: 2.346957e-01	ci left: 3.067300e-03	ci right 3.894353e-03	k: 277	n:80000
RNF8   80000 perm   18 sec   (4554 perm/sec)   p_kst 3.462500e-03   p_cons 2.028750e-02   p_joint 1.100000e-02

Joint ci ratio: 1.227128e-01	ci left: 1.052271e-02	ci right 1.190907e-02	k: 1008	n:90000
Cons ci ratio: 9.072324e-02	ci left: 1.939945e-02	ci right 2.125387e-02	k: 1828	n:90000
KS ci ratio: 2.208309e-01	ci left: 3.103691e-03	ci right 3.884407e-03	k: 313	n:90000
RNF8   90000 perm   20 sec   (4460 perm/sec)   p_kst 3.477778e-03   p_cons 2.031111e-02   p_joint 1.120000e-02

Joint ci ratio: 1.150793e-01	ci left: 1.080951e-02	ci right 1.213905e-02	k: 1146	n:100000
Cons ci ratio: 8.600768e-02	ci left: 1.947403e-02	ci right 2.123395e-02	k: 2034	n:100000
KS ci ratio: 2.082709e-01	ci left: 3.162390e-03	ci right 3.906864e-03	k: 352	n:100000
RNF8   100000 perm   23 sec   (4367 perm/sec)   p_kst 3.520000e-03   p_cons 2.034000e-02   p_joint 1.146000e-02

Joint ci ratio: 1.095352e-01	ci left: 1.087829e-02	ci right 1.214766e-02	k: 1265	n:110000
Cons ci ratio: 8.177239e-02	ci left: 1.962617e-02	ci right 2.130833e-02	k: 2250	n:110000
KS ci ratio: 1.983993e-01	ci left: 3.185521e-03	ci right 3.895597e-03	k: 388	n:110000
RNF8   110000 perm   26 sec   (4283 perm/sec)   p_kst 3.527273e-03   p_cons 2.045455e-02   p_joint 1.150000e-02

Joint ci ratio: 1.048371e-01	ci left: 1.091253e-02	ci right 1.212791e-02	k: 1381	n:120000
Cons ci ratio: 7.848118e-02	ci left: 1.956674e-02	ci right 2.117322e-02	k: 2443	n:120000
KS ci ratio: 1.913984e-01	ci left: 3.149932e-03	ci right 3.824414e-03	k: 417	n:120000
RNF8   120000 perm   29 sec   (4203 perm/sec)   p_kst 3.475000e-03   p_cons 2.035833e-02   p_joint 1.150833e-02

Joint ci ratio: 9.969086e-02	ci left: 1.116754e-02	ci right 1.234670e-02	k: 1527	n:130000
Cons ci ratio: 7.526699e-02	ci left: 1.966862e-02	ci right 2.121442e-02	k: 2656	n:130000
KS ci ratio: 1.834499e-01	ci left: 3.178899e-03	ci right 3.828174e-03	k: 454	n:130000
RNF8   130000 perm   32 sec   (4122 perm/sec)   p_kst 3.492308e-03   p_cons 2.043077e-02   p_joint 1.174615e-02

Joint ci ratio: 9.575700e-02	ci left: 1.126183e-02	ci right 1.240138e-02	k: 1655	n:140000
Cons ci ratio: 7.252115e-02	ci left: 1.970096e-02	ci right 2.119043e-02	k: 2861	n:140000
KS ci ratio: 1.746436e-01	ci left: 3.272524e-03	ci right 3.905453e-03	k: 501	n:140000
RNF8   140000 perm   35 sec   (4049 perm/sec)   p_kst 3.578571e-03   p_cons 2.043571e-02   p_joint 1.182143e-02

Joint ci ratio: 9.233344e-02	ci left: 1.132479e-02	ci right 1.242753e-02	k: 1780	n:150000
Cons ci ratio: 6.998558e-02	ci left: 1.976919e-02	ci right 2.120943e-02	k: 3072	n:150000
KS ci ratio: 1.682292e-01	ci left: 3.303207e-03	ci right 3.916227e-03	k: 540	n:150000
RNF8   150000 perm   38 sec   (3976 perm/sec)   p_kst 3.600000e-03   p_cons 2.048000e-02   p_joint 1.186667e-02

Joint ci ratio: 8.937134e-02	ci left: 1.134996e-02	ci right 1.241784e-02	k: 1900	n:160000
Cons ci ratio: 6.792068e-02	ci left: 1.970061e-02	ci right 2.109184e-02	k: 3262	n:160000
KS ci ratio: 1.637534e-01	ci left: 3.276464e-03	ci right 3.866750e-03	k: 570	n:160000
RNF8   160000 perm   41 sec   (3908 perm/sec)   p_kst 3.562500e-03   p_cons 2.038750e-02   p_joint 1.187500e-02

Joint ci ratio: 8.665547e-02	ci left: 1.137842e-02	ci right 1.241480e-02	k: 2021	n:170000
Cons ci ratio: 6.601860e-02	ci left: 1.964645e-02	ci right 2.099351e-02	k: 3453	n:170000
KS ci ratio: 1.580411e-01	ci left: 3.320850e-03	ci right 3.896283e-03	k: 612	n:170000
RNF8   170000 perm   44 sec   (3837 perm/sec)   p_kst 3.600000e-03   p_cons 2.031176e-02   p_joint 1.188824e-02

Joint ci ratio: 8.409365e-02	ci left: 1.142591e-02	ci right 1.243434e-02	k: 2146	n:180000
Cons ci ratio: 6.412435e-02	ci left: 1.968628e-02	ci right 2.099590e-02	k: 3660	n:180000
KS ci ratio: 1.532403e-01	ci left: 3.344591e-03	ci right 3.904917e-03	k: 651	n:180000
RNF8   180000 perm   48 sec   (3774 perm/sec)   p_kst 3.616667e-03   p_cons 2.033333e-02   p_joint 1.192222e-02

Joint ci ratio: 1.120995e-01	ci left: 6.036118e-03	ci right 6.758013e-03	k: 1214	n:190000
Cons ci ratio: 6.241727e-02	ci left: 1.970168e-02	ci right 2.097617e-02	k: 3863	n:190000
KS ci ratio: 1.488520e-01	ci left: 3.366068e-03	ci right 3.912406e-03	k: 690	n:190000
RNF8   190000 perm   51 sec   (3715 perm/sec)   p_kst 3.631579e-03   p_cons 2.033158e-02   p_joint 6.389474e-03

Joint ci ratio: 1.092159e-01	ci left: 6.050320e-03	ci right 6.754102e-03	k: 1279	n:200000
Cons ci ratio: 6.090848e-02	ci left: 1.967163e-02	ci right 2.091233e-02	k: 4057	n:200000
KS ci ratio: 1.451199e-01	ci left: 3.371146e-03	ci right 3.903400e-03	k: 726	n:200000
RNF8   200000 perm   55 sec   (3657 perm/sec)   p_kst 3.630000e-03   p_cons 2.028500e-02   p_joint 6.395000e-03

Joint ci ratio: 1.060687e-01	ci left: 6.119016e-03	ci right 6.808999e-03	k: 1356	n:210000
Cons ci ratio: 5.937591e-02	ci left: 1.972924e-02	ci right 2.094119e-02	k: 4269	n:210000
KS ci ratio: 1.412839e-01	ci left: 3.394270e-03	ci right 3.914816e-03	k: 766	n:210000
RNF8   210000 perm   58 sec   (3599 perm/sec)   p_kst 3.647619e-03   p_cons 2.032857e-02   p_joint 6.457143e-03

Joint ci ratio: 1.031065e-01	ci left: 6.190589e-03	ci right 6.867966e-03	k: 1435	n:220000
Cons ci ratio: 5.795349e-02	ci left: 1.978197e-02	ci right 2.096707e-02	k: 4481	n:220000
KS ci ratio: 1.378226e-01	ci left: 3.411071e-03	ci right 3.920326e-03	k: 805	n:220000
RNF8   220000 perm   62 sec   (3544 perm/sec)   p_kst 3.659091e-03   p_cons 2.036818e-02   p_joint 6.522727e-03

Joint ci ratio: 1.005799e-01	ci left: 6.230747e-03	ci right 6.894824e-03	k: 1508	n:230000
Cons ci ratio: 5.667179e-02	ci left: 1.980042e-02	ci right 2.095953e-02	k: 4686	n:230000
KS ci ratio: 1.339688e-01	ci left: 3.460170e-03	ci right 3.961160e-03	k: 852	n:230000
RNF8   230000 perm   66 sec   (3492 perm/sec)   p_kst 3.704348e-03   p_cons 2.037391e-02   p_joint 6.556522e-03

Joint ci ratio: 9.816794e-02	ci left: 6.275873e-03	ci right 6.927796e-03	k: 1583	n:240000
Cons ci ratio: 5.539643e-02	ci left: 1.987103e-02	ci right 2.100726e-02	k: 4904	n:240000
KS ci ratio: 1.302760e-01	ci left: 3.513422e-03	ci right 4.007015e-03	k: 901	n:240000
RNF8   240000 perm   70 sec   (3439 perm/sec)   p_kst 3.754167e-03   p_cons 2.043333e-02   p_joint 6.595833e-03

Joint ci ratio: 9.642013e-02	ci left: 6.251188e-03	ci right 6.888332e-03	k: 1641	n:250000
Cons ci ratio: 5.430637e-02	ci left: 1.986127e-02	ci right 2.097389e-02	k: 5103	n:250000
KS ci ratio: 1.278889e-01	ci left: 3.504492e-03	ci right 3.987125e-03	k: 935	n:250000
RNF8   250000 perm   74 sec   (3391 perm/sec)   p_kst 3.740000e-03   p_cons 2.041200e-02   p_joint 6.564000e-03

Joint ci ratio: 9.465043e-02	ci left: 6.243521e-03	ci right 6.867555e-03	k: 1703	n:260000
Cons ci ratio: 5.317595e-02	ci left: 1.992838e-02	ci right 2.102081e-02	k: 5322	n:260000
KS ci ratio: 1.256934e-01	ci left: 3.492600e-03	ci right 3.964723e-03	k: 968	n:260000
RNF8   260000 perm   78 sec   (3338 perm/sec)   p_kst 3.723077e-03   p_cons 2.046923e-02   p_joint 6.550000e-03

Joint ci ratio: 9.329432e-02	ci left: 6.193105e-03	ci right 6.802746e-03	k: 1753	n:270000
Cons ci ratio: 5.224337e-02	ci left: 1.989202e-02	ci right 2.096275e-02	k: 5514	n:270000
KS ci ratio: 1.236692e-01	ci left: 3.478065e-03	ci right 3.940096e-03	k: 1000	n:270000
RNF8   270000 perm   82 sec   (3292 perm/sec)   p_kst 3.703704e-03   p_cons 2.042222e-02   p_joint 6.492593e-03

Joint ci ratio: 9.176473e-02	ci left: 6.177758e-03	ci right 6.775383e-03	k: 1812	n:280000
Cons ci ratio: 5.136279e-02	ci left: 1.985489e-02	ci right 2.090507e-02	k: 5705	n:280000
KS ci ratio: 1.215627e-01	ci left: 3.475014e-03	ci right 3.928211e-03	k: 1035	n:280000
RNF8   280000 perm   86 sec   (3247 perm/sec)   p_kst 3.696429e-03   p_cons 2.037500e-02   p_joint 6.471429e-03

Joint ci ratio: 8.996999e-02	ci left: 6.210740e-03	ci right 6.799187e-03	k: 1885	n:290000
Cons ci ratio: 5.048160e-02	ci left: 1.985451e-02	ci right 2.088614e-02	k: 5906	n:290000
KS ci ratio: 1.189488e-01	ci left: 3.509039e-03	ci right 3.956141e-03	k: 1081	n:290000
RNF8   290000 perm   91 sec   (3203 perm/sec)   p_kst 3.727586e-03   p_cons 2.036552e-02   p_joint 6.500000e-03

Joint ci ratio: 8.793833e-02	ci left: 6.290535e-03	ci right 6.872392e-03	k: 1973	n:300000
Cons ci ratio: 4.966502e-02	ci left: 1.983784e-02	ci right 2.085145e-02	k: 6102	n:300000
KS ci ratio: 1.162382e-01	ci left: 3.557076e-03	ci right 3.999262e-03	k: 1132	n:300000
RNF8   300000 perm   95 sec   (3161 perm/sec)   p_kst 3.773333e-03   p_cons 2.034000e-02   p_joint 6.576667e-03

Joint ci ratio: 8.650408e-02	ci left: 6.295874e-03	ci right 6.868247e-03	k: 2039	n:310000
Cons ci ratio: 4.894635e-02	ci left: 1.977457e-02	ci right 2.076991e-02	k: 6283	n:310000
KS ci ratio: 1.147802e-01	ci left: 3.533174e-03	ci right 3.966507e-03	k: 1161	n:310000
RNF8   310000 perm   99 sec   (3116 perm/sec)   p_kst 3.745161e-03   p_cons 2.026774e-02   p_joint 6.577419e-03

Joint ci ratio: 8.511745e-02	ci left: 6.304011e-03	ci right 6.867480e-03	k: 2106	n:320000
Cons ci ratio: 4.812520e-02	ci left: 1.982343e-02	ci right 2.080403e-02	k: 6499	n:320000
KS ci ratio: 1.132802e-01	ci left: 3.516873e-03	ci right 3.942192e-03	k: 1192	n:320000
RNF8   320000 perm   104 sec   (3074 perm/sec)   p_kst 3.725000e-03   p_cons 2.030938e-02   p_joint 6.581250e-03

Joint ci ratio: 8.373730e-02	ci left: 6.320625e-03	ci right 6.875971e-03	k: 2176	n:330000
Cons ci ratio: 4.740531e-02	ci left: 1.981855e-02	ci right 2.078384e-02	k: 6698	n:330000
KS ci ratio: 1.113818e-01	ci left: 3.531054e-03	ci right 3.950462e-03	k: 1233	n:330000
RNF8   330000 perm   109 sec   (3032 perm/sec)   p_kst 3.736364e-03   p_cons 2.029697e-02   p_joint 6.593939e-03

Joint ci ratio: 8.245912e-02	ci left: 6.330570e-03	ci right 6.877891e-03	k: 2244	n:340000
Cons ci ratio: 4.676872e-02	ci left: 1.977044e-02	ci right 2.072011e-02	k: 6882	n:340000
KS ci ratio: 1.097487e-01	ci left: 3.533014e-03	ci right 3.946104e-03	k: 1270	n:340000
RNF8   340000 perm   114 sec   (2992 perm/sec)   p_kst 3.735294e-03   p_cons 2.024118e-02   p_joint 6.600000e-03

Joint ci ratio: 8.132627e-02	ci left: 6.326009e-03	ci right 6.865066e-03	k: 2307	n:350000
Cons ci ratio: 4.611383e-02	ci left: 1.976189e-02	ci right 2.069750e-02	k: 7079	n:350000
KS ci ratio: 1.084353e-01	ci left: 3.518223e-03	ci right 3.924347e-03	k: 1301	n:350000
RNF8   350000 perm   118 sec   (2954 perm/sec)   p_kst 3.717143e-03   p_cons 2.022571e-02   p_joint 6.591429e-03

Joint ci ratio: 8.017082e-02	ci left: 6.332641e-03	ci right 6.864237e-03	k: 2374	n:360000
Cons ci ratio: 4.555604e-02	ci left: 1.969347e-02	ci right 2.061427e-02	k: 7254	n:360000
KS ci ratio: 1.071276e-01	ci left: 3.506987e-03	ci right 3.906623e-03	k: 1333	n:360000
RNF8   360000 perm   123 sec   (2918 perm/sec)   p_kst 3.702778e-03   p_cons 2.015000e-02   p_joint 6.594444e-03

Joint ci ratio: 7.917758e-02	ci left: 6.320418e-03	ci right 6.844112e-03	k: 2434	n:370000
Cons ci ratio: 4.493783e-02	ci left: 1.969832e-02	ci right 2.060652e-02	k: 7455	n:370000
KS ci ratio: 1.061002e-01	ci left: 3.480597e-03	ci right 3.873185e-03	k: 1359	n:370000
RNF8   370000 perm   128 sec   (2881 perm/sec)   p_kst 3.672973e-03   p_cons 2.014865e-02   p_joint 6.578378e-03

Joint ci ratio: 7.820458e-02	ci left: 6.311457e-03	ci right 6.827689e-03	k: 2495	n:380000
Cons ci ratio: 4.426453e-02	ci left: 1.977326e-02	ci right 2.067091e-02	k: 7683	n:380000
KS ci ratio: 1.046857e-01	ci left: 3.483804e-03	ci right 3.871193e-03	k: 1396	n:380000
RNF8   380000 perm   134 sec   (2846 perm/sec)   p_kst 3.673684e-03   p_cons 2.021842e-02   p_joint 6.565789e-03

Joint ci ratio: 7.716035e-02	ci left: 6.320598e-03	ci right 6.830365e-03	k: 2563	n:390000
Cons ci ratio: 4.373926e-02	ci left: 1.973793e-02	ci right 2.062307e-02	k: 7869	n:390000
KS ci ratio: 1.032541e-01	ci left: 3.491876e-03	ci right 3.874530e-03	k: 1435	n:390000
RNF8   390000 perm   139 sec   (2809 perm/sec)   p_kst 3.679487e-03   p_cons 2.017692e-02   p_joint 6.571795e-03

Joint ci ratio: 7.602613e-02	ci left: 6.351400e-03	ci right 6.855788e-03	k: 2640	n:400000
Cons ci ratio: 4.318577e-02	ci left: 1.974646e-02	ci right 2.062051e-02	k: 8072	n:400000
KS ci ratio: 1.015691e-01	ci left: 3.521509e-03	ci right 3.900736e-03	k: 1483	n:400000
RNF8   400000 perm   144 sec   (2776 perm/sec)   p_kst 3.707500e-03   p_cons 2.018000e-02   p_joint 6.600000e-03

Joint ci ratio: 7.513553e-02	ci left: 6.347241e-03	ci right 6.845136e-03	k: 2703	n:410000
Cons ci ratio: 4.259503e-02	ci left: 1.980775e-02	ci right 2.067222e-02	k: 8297	n:410000
KS ci ratio: 1.005586e-01	ci left: 3.506938e-03	ci right 3.880618e-03	k: 1513	n:410000
RNF8   410000 perm   150 sec   (2742 perm/sec)   p_kst 3.690244e-03   p_cons 2.023659e-02   p_joint 6.592683e-03

Joint ci ratio: 7.438383e-02	ci left: 6.324618e-03	ci right 6.815560e-03	k: 2758	n:420000
Cons ci ratio: 4.211117e-02	ci left: 1.978843e-02	ci right 2.064201e-02	k: 8489	n:420000
KS ci ratio: 9.964251e-02	ci left: 3.488435e-03	ci right 3.856559e-03	k: 1541	n:420000
RNF8   420000 perm   155 sec   (2710 perm/sec)   p_kst 3.669048e-03   p_cons 2.021190e-02   p_joint 6.566667e-03

Outputting figure to mutsig2_images.part000000000148/RNF8.2_1584_420000_0.003669_0.020212_0.0065667.png
                gene_name: RNF8
               theta_stop: 0.100 
                    nperm: 420000 
                     p_ks: 0.0037 
        ci_ks_bounds_left: 0.0035 
       ci_ks_bounds_right: 0.0039 
                   p_cons: 0.020 
      ci_cons_bounds_left: 0.020 
     ci_cons_bounds_right: 0.021 
                  p_joint: 0.0066 
     ci_joint_bounds_left: 0.0063 
    ci_joint_bounds_right: 0.0068 

Current progress: 89 percent done.
RNMT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.245524e-03	ci left: 9.797349e-01	ci right 9.849787e-01	k: 9825	n:10000
Cons ci ratio: 1.792416e-02	ci left: 8.195432e-01	ci right 8.344658e-01	k: 8271	n:10000
KS ci ratio: 1.120740e-02	ci left: 9.191472e-01	ci right 9.296040e-01	k: 9245	n:10000
RNMT   10000 perm   2 sec   (6365 perm/sec)   p_kst 9.245000e-01   p_cons 8.271000e-01   p_joint 9.825000e-01

Outputting figure to mutsig2_images.part000000000148/RNMT.2_1471_10000_0.9245_0.8271_0.9825.png
                gene_name: RNMT
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 92 percent done.
RNPEPL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.895376e-02	ci left: 3.810207e-01	ci right 4.002431e-01	k: 3906	n:10000
Cons ci ratio: 3.050389e-02	ci left: 6.132157e-01	ci right 6.323128e-01	k: 6228	n:10000
KS ci ratio: 1.442098e-01	ci left: 6.381856e-02	ci right 7.383439e-02	k: 687	n:10000
RNPEPL1   10000 perm   2 sec   (6335 perm/sec)   p_kst 6.870000e-02   p_cons 6.228000e-01   p_joint 3.906000e-01

Joint ci ratio: 4.937250e-02	ci left: 2.336976e-01	ci right 2.455782e-01	k: 4792	n:20000
Cons ci ratio: 2.189545e-02	ci left: 6.089673e-01	ci right 6.224990e-01	k: 12315	n:20000
KS ci ratio: 1.020137e-01	ci left: 6.523233e-02	ci right 7.229367e-02	k: 1374	n:20000
RNPEPL1   20000 perm   4 sec   (5579 perm/sec)   p_kst 6.870000e-02   p_cons 6.157500e-01   p_joint 2.396000e-01

Joint ci ratio: 3.154420e-02	ci left: 3.344394e-01	ci right 3.451916e-01	k: 10194	n:30000
Cons ci ratio: 1.863146e-02	ci left: 5.904550e-01	ci right 6.015931e-01	k: 17881	n:30000
KS ci ratio: 8.240762e-02	ci left: 6.723595e-02	ci right 7.304763e-02	k: 2103	n:30000
RNPEPL1   30000 perm   6 sec   (5274 perm/sec)   p_kst 7.010000e-02   p_cons 5.960333e-01   p_joint 3.398000e-01

Outputting figure to mutsig2_images.part000000000148/RNPEPL1.2_1521_30000_0.0701_0.59603_0.3398.png
                gene_name: RNPEPL1
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.070 
        ci_ks_bounds_left: 0.067 
       ci_ks_bounds_right: 0.073 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 95 percent done.
RORA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.858401e-03	ci left: 9.883990e-01	ci right 9.923073e-01	k: 9905	n:10000
Cons ci ratio: 2.255029e-03	ci left: 9.954855e-01	ci right 9.978102e-01	k: 9968	n:10000
KS ci ratio: 1.827128e-01	ci left: 3.996794e-02	ci right 4.810038e-02	k: 439	n:10000
RORA   10000 perm   2 sec   (6028 perm/sec)   p_kst 4.390000e-02   p_cons 9.968000e-01   p_joint 9.905000e-01

Joint ci ratio: 3.092834e-03	ci left: 9.861275e-01	ci right 9.892283e-01	k: 19755	n:20000
Cons ci ratio: 1.677479e-03	ci left: 9.954685e-01	ci right 9.971822e-01	k: 19928	n:20000
KS ci ratio: 1.300529e-01	ci left: 4.061770e-02	ci right 4.631599e-02	k: 868	n:20000
RORA   20000 perm   4 sec   (5291 perm/sec)   p_kst 4.340000e-02   p_cons 9.964000e-01   p_joint 9.877500e-01

Joint ci ratio: 2.494027e-03	ci left: 9.867378e-01	ci right 9.892330e-01	k: 29641	n:30000
Cons ci ratio: 1.416022e-03	ci left: 9.953641e-01	ci right 9.968039e-01	k: 29884	n:30000
KS ci ratio: 1.054090e-01	ci left: 4.173925e-02	ci right 4.641622e-02	k: 1321	n:30000
RORA   30000 perm   6 sec   (5003 perm/sec)   p_kst 4.403333e-02   p_cons 9.961333e-01   p_joint 9.880333e-01

Joint ci ratio: 9.799510e-05	ci left: 9.999078e-01	ci right 1	k: 40000	n:40000
Cons ci ratio: 1.206448e-03	ci left: 9.956010e-01	ci right 9.968252e-01	k: 39850	n:40000
KS ci ratio: 9.179683e-02	ci left: 4.159509e-02	ci right 4.562151e-02	k: 1743	n:40000
RORA   40000 perm   8 sec   (4824 perm/sec)   p_kst 4.357500e-02   p_cons 9.962500e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000148/RORA.2_2096_40000_0.043575_0.99625_1.png
                gene_name: RORA
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.044 
        ci_ks_bounds_left: 0.042 
       ci_ks_bounds_right: 0.046 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
RORC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.116972e-02	ci left: 6.029702e-01	ci right 6.221641e-01	k: 6126	n:10000
Cons ci ratio: 1.109475e-02	ci left: 9.205911e-01	ci right 9.309592e-01	k: 9259	n:10000
KS ci ratio: 6.388808e-02	ci left: 2.646814e-01	ci right 2.822508e-01	k: 2734	n:10000
RORC   10000 perm   2 sec   (6344 perm/sec)   p_kst 2.734000e-01   p_cons 9.259000e-01   p_joint 6.126000e-01

Outputting figure to mutsig2_images.part000000000148/RORC.2_1612_10000_0.2734_0.9259_0.6126.png
                gene_name: RORC
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000148
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 148 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1419>
Subject: Job 8004509: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1419>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000149> was used as the working directory.
Started at Sun Nov 11 15:16:28 2012
Results reported at Sun Nov 11 15:23:53 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000149.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000149.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 149  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000149.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    551.81 sec.
    Max Memory :      4772 MB
    Max Swap   :      7058 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
149
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 149
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 149: processing genes 13391 - 13480
Calculating significance of each gene.
Using projection method.
13391	RP1L1	9.974936e-01
13392	RP2	1
13393	RP9	5.304675e-02
13394	RPA1	7.955643e-01
13395	RPA2	5.274846e-01
13396	RPA3	1
13397	RPA4	1.523282e-01
13398	RPAIN	1
13399	RPAP1	2.285081e-01
13400	RPAP2	6.311001e-01
13401	RPAP3	7.837258e-01
13402	RPE	1
13403	RPE65	3.327462e-01
13404	RPF1	1
13405	RPF2	1
13406	RPGR	1.245284e-01
13407	RPGRIP1	8.968689e-01
13408	RPGRIP1L	7.737980e-01
13409	RPH3A	9.649036e-01
13410	RPH3AL	1
13411	RPIA	1.325489e-01
13412	RPL10	1
13413	RPL10A	1
13414	RPL10L	9.993196e-05
13415	RPL11	1
13416	RPL12	1
13417	RPL13	3.588024e-01
13418	RPL13A	1
13419	RPL14	5.702050e-01
13420	RPL15	1
13421	RPL17	1
13422	RPL18	1
13423	RPL18A	1
13424	RPL19	4.112100e-01
13425	RPL21	1
13426	RPL22	1
13427	RPL22L1	1
13428	RPL23	1
13429	RPL23A	1
13430	RPL24	1
13431	RPL26	1
13432	RPL26L1	1
13433	RPL27	1
13434	RPL27A	1
13435	RPL28	1
13436	RPL29	1
13437	RPL3	1
13438	RPL30	1
13439	RPL31	1
13440	RPL32	2.504860e-01
13441	RPL34	1
13442	RPL35	1
13443	RPL35A	1
13444	RPL36	1
13445	RPL36A	1
13446	RPL36AL	1
13447	RPL37	2.401732e-01
13448	RPL37A	1
13449	RPL38	1
13450	RPL39	1
13451	RPL39L	1
13452	RPL3L	3.238579e-01
13453	RPL4	1
13454	RPL41	1
13455	RPL5	3.539876e-01
13456	RPL6	1
13457	RPL7	4.277396e-01
13458	RPL7A	6.924960e-01
13459	RPL7L1	1
13460	RPL8	1
13461	RPL9	1
13462	RPLP0	3.183667e-01
13463	RPLP1	1
13464	RPLP2	1
13465	RPN1	8.035350e-01
13466	RPN2	1
13467	RPP14	1
13468	RPP21	1
13469	RPP25	1
13470	RPP30	4.726209e-01
13471	RPP38	6.059709e-01
13472	RPP40	5.408883e-01
13473	RPRD1A	5.839582e-01
13474	RPRD1B	1
13475	RPRD2	7.500796e-01
13476	RPRM	1
13477	RPRML	2.258248e-01
13478	RPS10	1
13479	RPS11	3.716061e-01
13480	RPS12	2.222695e-01
Done

Running MutSig 2:
Scatter job 149: processing genes 13391 - 13480
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
RP1L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.985870e-01	ci left: 3.376644e-02	ci right 4.130605e-02	k: 374	n:10000
Cons ci ratio: 4.184154e-01	ci left: 6.884481e-03	ci right 1.061018e-02	k: 86	n:10000
KS ci ratio: 2.386945e-02	ci left: 7.206775e-01	ci right 7.381887e-01	k: 7295	n:10000
RP1L1   10000 perm   3 sec   (2878 perm/sec)   p_kst 7.295000e-01   p_cons 8.600000e-03   p_joint 3.740000e-02

Joint ci ratio: 1.235762e-01	ci left: 4.493272e-02	ci right 5.089960e-02	k: 957	n:20000
Cons ci ratio: 3.048355e-01	ci left: 6.950867e-03	ci right 9.495224e-03	k: 163	n:20000
KS ci ratio: 1.696621e-02	ci left: 7.212212e-01	ci right 7.336126e-01	k: 14549	n:20000
RP1L1   20000 perm   10 sec   (1953 perm/sec)   p_kst 7.274500e-01   p_cons 8.150000e-03   p_joint 4.785000e-02

Joint ci ratio: 9.984660e-02	ci left: 4.642167e-02	ci right 5.133284e-02	k: 1465	n:30000
Cons ci ratio: 2.580461e-01	ci left: 6.648515e-03	ci right 8.648608e-03	k: 228	n:30000
KS ci ratio: 1.358127e-02	ci left: 7.302014e-01	ci right 7.402197e-01	k: 22057	n:30000
RP1L1   30000 perm   14 sec   (2124 perm/sec)   p_kst 7.352333e-01   p_cons 7.600000e-03   p_joint 4.883333e-02

Joint ci ratio: 8.377118e-02	ci left: 4.972174e-02	ci right 5.409360e-02	k: 2075	n:40000
Cons ci ratio: 2.266127e-01	ci left: 6.583529e-03	ci right 8.289151e-03	k: 296	n:40000
KS ci ratio: 1.172878e-02	ci left: 7.319774e-01	ci right 7.406383e-01	k: 29453	n:40000
RP1L1   40000 perm   18 sec   (2217 perm/sec)   p_kst 7.363250e-01   p_cons 7.400000e-03   p_joint 5.187500e-02

Joint ci ratio: 8.734828e-02	ci left: 3.702620e-02	ci right 4.042762e-02	k: 1935	n:50000
Cons ci ratio: 2.005903e-01	ci left: 6.819465e-03	ci right 8.358533e-03	k: 378	n:50000
KS ci ratio: 1.052473e-02	ci left: 7.311683e-01	ci right 7.389244e-01	k: 36753	n:50000
RP1L1   50000 perm   22 sec   (2270 perm/sec)   p_kst 7.350600e-01   p_cons 7.560000e-03   p_joint 3.870000e-02

Joint ci ratio: 6.823750e-02	ci left: 5.035159e-02	ci right 5.392522e-02	k: 3127	n:60000
Cons ci ratio: 1.820675e-01	ci left: 6.968399e-03	ci right 8.379848e-03	k: 459	n:60000
KS ci ratio: 1.060433e-02	ci left: 6.911813e-01	ci right 6.985665e-01	k: 41693	n:60000
RP1L1   60000 perm   26 sec   (2277 perm/sec)   p_kst 6.948833e-01   p_cons 7.650000e-03   p_joint 5.211667e-02

Joint ci ratio: 6.168595e-02	ci left: 5.285788e-02	ci right 5.623630e-02	k: 3817	n:70000
Cons ci ratio: 1.702755e-01	ci left: 6.874200e-03	ci right 8.167126e-03	k: 525	n:70000
KS ci ratio: 9.053093e-03	ci left: 7.248304e-01	ci right 7.314364e-01	k: 50970	n:70000
RP1L1   70000 perm   31 sec   (2283 perm/sec)   p_kst 7.281429e-01   p_cons 7.500000e-03   p_joint 5.452857e-02

Joint ci ratio: 6.486193e-02	ci left: 4.224452e-02	ci right 4.508870e-02	k: 3492	n:80000
Cons ci ratio: 1.582397e-01	ci left: 7.009859e-03	ci right 8.226257e-03	k: 608	n:80000
KS ci ratio: 8.478941e-03	ci left: 7.245507e-01	ci right 7.307328e-01	k: 58212	n:80000
RP1L1   80000 perm   35 sec   (2278 perm/sec)   p_kst 7.276500e-01   p_cons 7.600000e-03   p_joint 4.365000e-02

Joint ci ratio: 6.135374e-02	ci left: 4.205610e-02	ci right 4.472898e-02	k: 3904	n:90000
Cons ci ratio: 1.487666e-01	ci left: 7.085775e-03	ci right 8.235188e-03	k: 688	n:90000
KS ci ratio: 7.990328e-03	ci left: 7.249127e-01	ci right 7.307393e-01	k: 65505	n:90000
RP1L1   90000 perm   40 sec   (2276 perm/sec)   p_kst 7.278333e-01   p_cons 7.644444e-03   p_joint 4.337778e-02

Joint ci ratio: 5.342305e-02	ci left: 4.972349e-02	ci right 5.246262e-02	k: 5108	n:100000
Cons ci ratio: 1.405376e-01	ci left: 7.177198e-03	ci right 8.271645e-03	k: 771	n:100000
KS ci ratio: 7.574809e-03	ci left: 7.253508e-01	ci right 7.308760e-01	k: 72812	n:100000
RP1L1   100000 perm   44 sec   (2270 perm/sec)   p_kst 7.281200e-01   p_cons 7.710000e-03   p_joint 5.108000e-02

Joint ci ratio: 5.281522e-02	ci left: 4.642994e-02	ci right 4.895761e-02	k: 5245	n:110000
Cons ci ratio: 1.310884e-01	ci left: 7.534781e-03	ci right 8.600492e-03	k: 886	n:110000
KS ci ratio: 7.212218e-03	ci left: 7.260345e-01	ci right 7.312989e-01	k: 80154	n:110000
RP1L1   110000 perm   49 sec   (2259 perm/sec)   p_kst 7.286727e-01   p_cons 8.054545e-03   p_joint 4.768182e-02

Joint ci ratio: 4.970148e-02	ci left: 4.805713e-02	ci right 5.051471e-02	k: 5913	n:120000
Cons ci ratio: 1.257460e-01	ci left: 7.527938e-03	ci right 8.546053e-03	k: 963	n:120000
KS ci ratio: 6.900042e-03	ci left: 7.264421e-01	ci right 7.314802e-01	k: 87476	n:120000
RP1L1   120000 perm   53 sec   (2251 perm/sec)   p_kst 7.289667e-01   p_cons 8.025000e-03   p_joint 4.927500e-02

Joint ci ratio: 5.049314e-02	ci left: 4.318782e-02	ci right 4.543256e-02	k: 5759	n:130000
Cons ci ratio: 1.214200e-01	ci left: 7.470669e-03	ci right 8.443779e-03	k: 1033	n:130000
KS ci ratio: 6.624917e-03	ci left: 7.268063e-01	ci right 7.316450e-01	k: 94800	n:130000
RP1L1   130000 perm   58 sec   (2240 perm/sec)   p_kst 7.292308e-01   p_cons 7.946154e-03   p_joint 4.430000e-02

Joint ci ratio: 5.031759e-02	ci left: 4.050354e-02	ci right 4.260121e-02	k: 5816	n:140000
Cons ci ratio: 1.164531e-01	ci left: 7.560806e-03	ci right 8.502598e-03	k: 1123	n:140000
KS ci ratio: 6.392049e-03	ci left: 7.263913e-01	ci right 7.310564e-01	k: 102022	n:140000
RP1L1   140000 perm   63 sec   (2229 perm/sec)   p_kst 7.287286e-01   p_cons 8.021429e-03   p_joint 4.154286e-02

Joint ci ratio: 4.974435e-02	ci left: 3.876358e-02	ci right 4.074759e-02	k: 5962	n:150000
Cons ci ratio: 1.129442e-01	ci left: 7.516497e-03	ci right 8.422677e-03	k: 1194	n:150000
KS ci ratio: 6.178461e-03	ci left: 7.262684e-01	ci right 7.307761e-01	k: 109279	n:150000
RP1L1   150000 perm   68 sec   (2215 perm/sec)   p_kst 7.285267e-01   p_cons 7.960000e-03   p_joint 3.974667e-02

Joint ci ratio: 4.765802e-02	ci left: 3.960108e-02	ci right 4.154061e-02	k: 6490	n:160000
Cons ci ratio: 1.095601e-01	ci left: 7.502420e-03	ci right 8.378052e-03	k: 1269	n:160000
KS ci ratio: 5.982484e-03	ci left: 7.263261e-01	ci right 7.306906e-01	k: 116562	n:160000
RP1L1   160000 perm   73 sec   (2201 perm/sec)   p_kst 7.285125e-01   p_cons 7.931250e-03   p_joint 4.056250e-02

Joint ci ratio: 4.575211e-02	ci left: 4.044627e-02	ci right 4.234588e-02	k: 7036	n:170000
Cons ci ratio: 1.062641e-01	ci left: 7.518992e-03	ci right 8.368506e-03	k: 1349	n:170000
KS ci ratio: 5.810433e-03	ci left: 7.259427e-01	ci right 7.301789e-01	k: 123771	n:170000
RP1L1   170000 perm   78 sec   (2186 perm/sec)   p_kst 7.280647e-01   p_cons 7.935294e-03   p_joint 4.138824e-02

Joint ci ratio: 4.324215e-02	ci left: 4.271621e-02	ci right 4.460964e-02	k: 7858	n:180000
Cons ci ratio: 1.029950e-01	ci left: 7.571966e-03	ci right 8.399553e-03	k: 1436	n:180000
KS ci ratio: 5.647966e-03	ci left: 7.259156e-01	ci right 7.300326e-01	k: 131036	n:180000
RP1L1   180000 perm   83 sec   (2169 perm/sec)   p_kst 7.279778e-01   p_cons 7.977778e-03   p_joint 4.365556e-02

Joint ci ratio: 4.190851e-02	ci left: 4.309776e-02	ci right 4.494776e-02	k: 8363	n:190000
Cons ci ratio: 1.003759e-01	ci left: 7.563267e-03	ci right 8.367643e-03	k: 1512	n:190000
KS ci ratio: 5.500379e-03	ci left: 7.257504e-01	ci right 7.297585e-01	k: 138274	n:190000
RP1L1   190000 perm   88 sec   (2152 perm/sec)   p_kst 7.277579e-01   p_cons 7.957895e-03   p_joint 4.401579e-02

Joint ci ratio: 4.121403e-02	ci left: 4.238242e-02	ci right 4.417085e-02	k: 8654	n:200000
Cons ci ratio: 9.782292e-02	ci left: 7.575192e-03	ci right 8.359170e-03	k: 1592	n:200000
KS ci ratio: 5.358982e-03	ci left: 7.259588e-01	ci right 7.298646e-01	k: 145583	n:200000
RP1L1   200000 perm   94 sec   (2136 perm/sec)   p_kst 7.279150e-01   p_cons 7.960000e-03   p_joint 4.327000e-02

Outputting figure to mutsig2_images.part000000000149/RP1L1.16_7215_200000_0.72791_0.00796_0.04327.png
                gene_name: RP1L1
               theta_stop: 0.098 
                    nperm: 200000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.0080 
      ci_cons_bounds_left: 0.0076 
     ci_cons_bounds_right: 0.0084 
                  p_joint: 0.043 
     ci_joint_bounds_left: 0.042 
    ci_joint_bounds_right: 0.044 

Current progress: 6 percent done.
RPAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.440970e-02	ci left: 3.323022e-01	ci right 3.509901e-01	k: 3416	n:10000
Cons ci ratio: 7.241845e-02	ci left: 2.183268e-01	ci right 2.348328e-01	k: 2265	n:10000
KS ci ratio: 5.812920e-02	ci left: 3.034210e-01	ci right 3.216883e-01	k: 3125	n:10000
RPAP1   10000 perm   3 sec   (3956 perm/sec)   p_kst 3.125000e-01   p_cons 2.265000e-01   p_joint 3.416000e-01

Outputting figure to mutsig2_images.part000000000149/RPAP1.9_4278_10000_0.3125_0.2265_0.3416.png
                gene_name: RPAP1
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 11 percent done.
RPGR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.778521e-02	ci left: 5.084526e-01	ci right 5.281367e-01	k: 5183	n:10000
KS ci ratio: 3.533157e-02	ci left: 5.418888e-01	ci right 5.614810e-01	k: 5517	n:10000
RPGR   10000 perm   2 sec   (4082 perm/sec)   p_kst 5.517000e-01   p_cons 5.183000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000149/RPGR.7_4078_10000_0.5517_0.5183_1.png
                gene_name: RPGR
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 17 percent done.
RPL10L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.353708e-02	ci left: 7.262324e-01	ci right 7.436305e-01	k: 7350	n:10000
Cons ci ratio: 1.934324e-02	ci left: 7.962844e-01	ci right 8.119380e-01	k: 8042	n:10000
KS ci ratio: 3.219017e-02	ci left: 5.875100e-01	ci right 6.068334e-01	k: 5972	n:10000
RPL10L   10000 perm   2 sec   (6291 perm/sec)   p_kst 5.972000e-01   p_cons 8.042000e-01   p_joint 7.350000e-01

Outputting figure to mutsig2_images.part000000000149/RPL10L.7_649_10000_0.5972_0.8042_0.735.png
                gene_name: RPL10L
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.74 

Current progress: 22 percent done.
RPRD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.336753e-02	ci left: 5.700537e-01	ci right 5.894998e-01	k: 5798	n:10000
Cons ci ratio: 5.455513e-02	ci left: 3.311104e-01	ci right 3.497826e-01	k: 3404	n:10000
KS ci ratio: 4.309433e-02	ci left: 4.429091e-01	ci right 4.625185e-01	k: 4527	n:10000
RPRD2   10000 perm   2 sec   (4081 perm/sec)   p_kst 4.527000e-01   p_cons 3.404000e-01   p_joint 5.798000e-01

Outputting figure to mutsig2_images.part000000000149/RPRD2.5_4430_10000_0.4527_0.3404_0.5798.png
                gene_name: RPRD2
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 28 percent done.
RPGRIP1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.066107e-02	ci left: 7.743839e-01	ci right 7.906512e-01	k: 7826	n:10000
KS ci ratio: 1.492718e-02	ci left: 8.667238e-01	ci right 8.798579e-01	k: 8734	n:10000
RPGRIP1L   10000 perm   2 sec   (4754 perm/sec)   p_kst 8.734000e-01   p_cons 7.826000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000149/RPGRIP1L.4_4052_10000_0.8734_0.7826_1.png
                gene_name: RPGRIP1L
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 33 percent done.
RPH3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.022247e-02	ci left: 2.885499e-01	ci right 3.065682e-01	k: 2975	n:10000
Cons ci ratio: 5.885386e-02	ci left: 2.981652e-01	ci right 3.163472e-01	k: 3072	n:10000
KS ci ratio: 6.645966e-02	ci left: 2.494459e-01	ci right 2.666952e-01	k: 2580	n:10000
RPH3A   10000 perm   2 sec   (5554 perm/sec)   p_kst 2.580000e-01   p_cons 3.072000e-01   p_joint 2.975000e-01

Outputting figure to mutsig2_images.part000000000149/RPH3A.4_2165_10000_0.258_0.3072_0.2975.png
                gene_name: RPH3A
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 39 percent done.
RPE65
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.652600e-02	ci left: 5.253654e-01	ci right 5.450141e-01	k: 5352	n:10000
Cons ci ratio: 4.748480e-02	ci left: 3.955567e-01	ci right 4.148985e-01	k: 4052	n:10000
KS ci ratio: 4.129592e-02	ci left: 4.640723e-01	ci right 4.837429e-01	k: 4739	n:10000
RPE65   10000 perm   2 sec   (6021 perm/sec)   p_kst 4.739000e-01   p_cons 4.052000e-01   p_joint 5.352000e-01

Outputting figure to mutsig2_images.part000000000149/RPE65.3_1658_10000_0.4739_0.4052_0.5352.png
                gene_name: RPE65
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 44 percent done.
RP9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.750272e-02	ci left: 6.607862e-01	ci right 6.793147e-01	k: 6701	n:10000
Cons ci ratio: 5.214247e-02	ci left: 3.515781e-01	ci right 3.705029e-01	k: 3610	n:10000
KS ci ratio: 3.194324e-02	ci left: 5.912235e-01	ci right 6.105177e-01	k: 6009	n:10000
RP9   10000 perm   2 sec   (6532 perm/sec)   p_kst 6.009000e-01   p_cons 3.610000e-01   p_joint 6.701000e-01

Outputting figure to mutsig2_images.part000000000149/RP9.2_690_10000_0.6009_0.361_0.6701.png
                gene_name: RP9
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 50 percent done.
RPA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.843343e-02	ci left: 3.860973e-01	ci right 4.053635e-01	k: 3957	n:10000
Cons ci ratio: 4.948217e-02	ci left: 3.759451e-01	ci right 3.951216e-01	k: 3855	n:10000
KS ci ratio: 6.271914e-02	ci left: 2.720070e-01	ci right 2.897208e-01	k: 2808	n:10000
RPA4   10000 perm   1 sec   (6878 perm/sec)   p_kst 2.808000e-01   p_cons 3.855000e-01   p_joint 3.957000e-01

Outputting figure to mutsig2_images.part000000000149/RPA4.2_790_10000_0.2808_0.3855_0.3957.png
                gene_name: RPA4
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 56 percent done.
RPAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.228335e-03	ci left: 9.635202e-01	ci right 9.706043e-01	k: 9672	n:10000
KS ci ratio: 5.783299e-02	ci left: 3.056030e-01	ci right 3.239050e-01	k: 3147	n:10000
RPAP2   10000 perm   2 sec   (6001 perm/sec)   p_kst 3.147000e-01   p_cons 9.672000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000149/RPAP2.2_1891_10000_0.3147_0.9672_1.png
                gene_name: RPAP2
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 61 percent done.
RPAP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.044270e-01	ci left: 1.170141e-01	ci right 1.300061e-01	k: 1234	n:10000
Cons ci ratio: 2.248291e-01	ci left: 2.617677e-02	ci right 3.290101e-02	k: 294	n:10000
KS ci ratio: 1.055019e-01	ci left: 1.148645e-01	ci right 1.277571e-01	k: 1212	n:10000
RPAP3   10000 perm   2 sec   (5811 perm/sec)   p_kst 1.212000e-01   p_cons 2.940000e-02   p_joint 1.234000e-01

Joint ci ratio: 8.402037e-02	ci left: 9.401126e-02	ci right 1.023060e-01	k: 1962	n:20000
Cons ci ratio: 1.591209e-01	ci left: 2.710248e-02	ci right 3.183564e-02	k: 588	n:20000
KS ci ratio: 7.525703e-02	ci left: 1.149366e-01	ci right 1.239743e-01	k: 2388	n:20000
RPAP3   20000 perm   4 sec   (5131 perm/sec)   p_kst 1.194000e-01   p_cons 2.940000e-02   p_joint 9.810000e-02

Joint ci ratio: 8.427486e-02	ci left: 6.442489e-02	ci right 7.012592e-02	k: 2017	n:30000
Cons ci ratio: 1.304945e-01	ci left: 2.729154e-02	ci right 3.113368e-02	k: 875	n:30000
KS ci ratio: 6.154016e-02	ci left: 1.154551e-01	ci right 1.228189e-01	k: 3573	n:30000
RPAP3   30000 perm   6 sec   (4882 perm/sec)   p_kst 1.191000e-01   p_cons 2.916667e-02   p_joint 6.723333e-02

Joint ci ratio: 7.328664e-02	ci left: 6.429852e-02	ci right 6.921460e-02	k: 2669	n:40000
Cons ci ratio: 1.135135e-01	ci left: 2.730436e-02	ci right 3.061450e-02	k: 1157	n:40000
KS ci ratio: 5.303264e-02	ci left: 1.169789e-01	ci right 1.233764e-01	k: 4806	n:40000
RPAP3   40000 perm   8 sec   (4715 perm/sec)   p_kst 1.201500e-01   p_cons 2.892500e-02   p_joint 6.672500e-02

Joint ci ratio: 6.555496e-02	ci left: 6.454796e-02	ci right 6.894251e-02	k: 3336	n:50000
Cons ci ratio: 1.009744e-01	ci left: 2.778063e-02	ci right 3.075436e-02	k: 1462	n:50000
KS ci ratio: 4.730761e-02	ci left: 1.178764e-01	ci right 1.236078e-01	k: 6036	n:50000
RPAP3   50000 perm   11 sec   (4583 perm/sec)   p_kst 1.207200e-01   p_cons 2.924000e-02   p_joint 6.672000e-02

Joint ci ratio: 5.938693e-02	ci left: 6.568595e-02	ci right 6.972265e-02	k: 4061	n:60000
Cons ci ratio: 9.120725e-02	ci left: 2.850280e-02	ci right 3.124293e-02	k: 1791	n:60000
KS ci ratio: 4.306217e-02	ci left: 1.187307e-01	ci right 1.239726e-01	k: 7280	n:60000
RPAP3   60000 perm   13 sec   (4462 perm/sec)   p_kst 1.213333e-01   p_cons 2.985000e-02   p_joint 6.768333e-02

Outputting figure to mutsig2_images.part000000000149/RPAP3.2_2062_60000_0.12133_0.02985_0.067683.png
                gene_name: RPAP3
               theta_stop: 0.091 
                    nperm: 60000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.030 
      ci_cons_bounds_left: 0.029 
     ci_cons_bounds_right: 0.031 
                  p_joint: 0.068 
     ci_joint_bounds_left: 0.066 
    ci_joint_bounds_right: 0.070 

Current progress: 67 percent done.
RPGRIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.777008e-02	ci left: 5.086527e-01	ci right 5.283365e-01	k: 5185	n:10000
Cons ci ratio: 4.033941e-02	ci left: 4.757596e-01	ci right 4.954488e-01	k: 4856	n:10000
KS ci ratio: 6.473460e-02	ci left: 2.595354e-01	ci right 2.769998e-01	k: 2682	n:10000
RPGRIP1   10000 perm   2 sec   (4898 perm/sec)   p_kst 2.682000e-01   p_cons 4.856000e-01   p_joint 5.185000e-01

Outputting figure to mutsig2_images.part000000000149/RPGRIP1.2_3957_10000_0.2682_0.4856_0.5185.png
                gene_name: RPGRIP1
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 72 percent done.
RPIA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.400250e-02	ci left: 7.184560e-01	ci right 7.360115e-01	k: 7273	n:10000
KS ci ratio: 4.601716e-03	ci left: 9.840410e-01	ci right 9.886693e-01	k: 9865	n:10000
RPIA   10000 perm   2 sec   (6135 perm/sec)   p_kst 9.865000e-01   p_cons 7.273000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000149/RPIA.2_972_10000_0.9865_0.7273_1.png
                gene_name: RPIA
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
RPL3L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.694647e-02	ci left: 5.196599e-01	ci right 5.393230e-01	k: 5295	n:10000
Cons ci ratio: 4.749465e-02	ci left: 3.954571e-01	ci right 4.147982e-01	k: 4051	n:10000
KS ci ratio: 2.067437e-01	ci left: 3.110398e-02	ci right 3.837033e-02	k: 346	n:10000
RPL3L   10000 perm   2 sec   (5957 perm/sec)   p_kst 3.460000e-02   p_cons 4.051000e-01   p_joint 5.295000e-01

Joint ci ratio: 2.620565e-02	ci left: 5.210527e-01	ci right 5.349392e-01	k: 10560	n:20000
Cons ci ratio: 3.326167e-02	ci left: 4.029727e-01	ci right 4.166535e-01	k: 8196	n:20000
KS ci ratio: 1.480826e-01	ci left: 3.133844e-02	ci right 3.639826e-02	k: 676	n:20000
RPL3L   20000 perm   4 sec   (5103 perm/sec)   p_kst 3.380000e-02   p_cons 4.098000e-01   p_joint 5.280000e-01

Joint ci ratio: 1.410175e-02	ci left: 7.152165e-01	ci right 7.254074e-01	k: 21610	n:30000
Cons ci ratio: 2.715701e-02	ci left: 4.042605e-01	ci right 4.154237e-01	k: 12295	n:30000
KS ci ratio: 1.204502e-01	ci left: 3.204252e-02	ci right 3.618168e-02	k: 1022	n:30000
RPL3L   30000 perm   6 sec   (4942 perm/sec)   p_kst 3.406667e-02   p_cons 4.098333e-01   p_joint 7.203333e-01

Joint ci ratio: 1.843995e-02	ci left: 5.255446e-01	ci right 5.353510e-01	k: 21218	n:40000
Cons ci ratio: 2.356203e-02	ci left: 4.041263e-01	ci right 4.137870e-01	k: 16358	n:40000
KS ci ratio: 1.046314e-01	ci left: 3.212354e-02	ci right 3.569454e-02	k: 1355	n:40000
RPL3L   40000 perm   8 sec   (4813 perm/sec)   p_kst 3.387500e-02   p_cons 4.089500e-01   p_joint 5.304500e-01

Joint ci ratio: 1.648702e-02	ci left: 5.262540e-01	ci right 5.350225e-01	k: 26532	n:50000
Cons ci ratio: 2.109871e-02	ci left: 4.040870e-01	ci right 4.127237e-01	k: 20420	n:50000
KS ci ratio: 9.364263e-02	ci left: 3.227221e-02	ci right 3.546221e-02	k: 1692	n:50000
RPL3L   50000 perm   11 sec   (4662 perm/sec)   p_kst 3.384000e-02   p_cons 4.084000e-01   p_joint 5.306400e-01

Outputting figure to mutsig2_images.part000000000149/RPL3L.2_1264_50000_0.03384_0.4084_0.53064.png
                gene_name: RPL3L
               theta_stop: 0.094 
                    nperm: 50000 
                     p_ks: 0.034 
        ci_ks_bounds_left: 0.032 
       ci_ks_bounds_right: 0.035 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.54 

Current progress: 83 percent done.
RPL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.006139e-02	ci left: 3.704727e-01	ci right 3.895972e-01	k: 3800	n:10000
Cons ci ratio: 1.111015e-01	ci left: 1.045169e-01	ci right 1.169109e-01	k: 1106	n:10000
KS ci ratio: 8.440949e-02	ci left: 1.698592e-01	ci right 1.849292e-01	k: 1773	n:10000
RPL5   10000 perm   1 sec   (6861 perm/sec)   p_kst 1.773000e-01   p_cons 1.106000e-01   p_joint 3.800000e-01

Joint ci ratio: 4.520441e-02	ci left: 2.670327e-01	ci right 2.794333e-01	k: 5464	n:20000
Cons ci ratio: 7.685506e-02	ci left: 1.106590e-01	ci right 1.195532e-01	k: 2301	n:20000
KS ci ratio: 6.019328e-02	ci left: 1.696577e-01	ci right 1.802369e-01	k: 3498	n:20000
RPL5   20000 perm   3 sec   (5914 perm/sec)   p_kst 1.749000e-01   p_cons 1.150500e-01   p_joint 2.732000e-01

Outputting figure to mutsig2_images.part000000000149/RPL5.2_926_20000_0.1749_0.11505_0.2732.png
                gene_name: RPL5
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 89 percent done.
RPL8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.740994e-02	ci left: 2.441069e-01	ci right 2.612374e-01	k: 2526	n:10000
KS ci ratio: 1.248199e-02	ci left: 9.021657e-01	ci right 9.135954e-01	k: 9080	n:10000
RPL8   10000 perm   2 sec   (6599 perm/sec)   p_kst 9.080000e-01   p_cons 2.526000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000149/RPL8.2_794_10000_0.908_0.2526_1.png
                gene_name: RPL8
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
RPLP0
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.832224e-02	ci left: 3.871924e-01	ci right 4.064677e-01	k: 3968	n:10000
Cons ci ratio: 4.214176e-02	ci left: 4.539876e-01	ci right 4.736335e-01	k: 4638	n:10000
KS ci ratio: 1.613966e-01	ci left: 5.118874e-02	ci right 6.027224e-02	k: 556	n:10000
RPLP0   10000 perm   2 sec   (6530 perm/sec)   p_kst 5.560000e-02   p_cons 4.638000e-01   p_joint 3.968000e-01

Joint ci ratio: 3.445227e-02	ci left: 3.861223e-01	ci right 3.997089e-01	k: 7858	n:20000
Cons ci ratio: 3.172905e-02	ci left: 4.259185e-01	ci right 4.397010e-01	k: 8656	n:20000
KS ci ratio: 1.144539e-01	ci left: 5.222078e-02	ci right 5.860924e-02	k: 1107	n:20000
RPLP0   20000 perm   4 sec   (5631 perm/sec)   p_kst 5.535000e-02   p_cons 4.328000e-01   p_joint 3.929000e-01

Joint ci ratio: 3.044218e-02	ci left: 3.505129e-01	ci right 3.613817e-01	k: 10678	n:30000
Cons ci ratio: 2.582142e-02	ci left: 4.288142e-01	ci right 4.400652e-01	k: 13033	n:30000
KS ci ratio: 9.390133e-02	ci left: 5.231636e-02	ci right 5.750360e-02	k: 1646	n:30000
RPLP0   30000 perm   6 sec   (5330 perm/sec)   p_kst 5.486667e-02   p_cons 4.344333e-01   p_joint 3.559333e-01

Outputting figure to mutsig2_images.part000000000149/RPLP0.2_982_30000_0.054867_0.43443_0.35593.png
                gene_name: RPLP0
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.055 
        ci_ks_bounds_left: 0.052 
       ci_ks_bounds_right: 0.058 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000149
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 149 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1726>
Subject: Job 8004515: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1726>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000150> was used as the working directory.
Started at Sun Nov 11 15:16:28 2012
Results reported at Sun Nov 11 15:21:43 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000150.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000150.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 150  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000150.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    305.05 sec.
    Max Memory :      4772 MB
    Max Swap   :      7038 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
150
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 150
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 150: processing genes 13481 - 13571
Calculating significance of each gene.
Using projection method.
13481	RPS13	1
13482	RPS14	1
13483	RPS15	1
13484	RPS15A	1
13485	RPS16	1
13486	RPS18	5.136842e-01
13487	RPS19	3.037806e-01
13488	RPS19BP1	1
13489	RPS2	3.746309e-01
13490	RPS20	1.271079e-01
13491	RPS21	5.391442e-02
13492	RPS23	1
13493	RPS24	1
13494	RPS25	1
13495	RPS26	1.840725e-01
13496	RPS27	1
13497	RPS27A	1
13498	RPS27L	1
13499	RPS28	1
13500	RPS29	1
13501	RPS3	1
13502	RPS3A	1
13503	RPS4X	1
13504	RPS4Y1	1
13505	RPS4Y2	5.892206e-01
13506	RPS5	1
13507	RPS6	5.460239e-01
13508	RPS6KA1	7.112151e-01
13509	RPS6KA2	1.188605e-01
13510	RPS6KA3	8.712843e-01
13511	RPS6KA4	9.325302e-01
13512	RPS6KA5	3.017745e-01
13513	RPS6KA6	1
13514	RPS6KB1	8.988831e-01
13515	RPS6KB2	6.895832e-01
13516	RPS6KC1	2.023810e-01
13517	RPS6KL1	1
13518	RPS7	1
13519	RPS8	6.354068e-01
13520	RPS9	1
13521	RPSA	1
13522	RPTN	1
13523	RPTOR	7.519662e-01
13524	RPUSD1	2.974521e-01
13525	RPUSD2	7.462383e-01
13526	RPUSD3	1
13527	RPUSD4	5.154001e-01
13528	RQCD1	1
13529	RRAD	1
13530	RRAGA	1
13531	RRAGB	1
13532	RRAGC	5.842906e-01
13533	RRAGD	1
13534	RRAS	1
13535	RRAS2	6.180076e-02
13536	RRBP1	8.837771e-01
13537	RREB1	9.535417e-01
13538	RRH	1
13539	RRM1	9.539659e-01
13540	RRM2	5.654884e-01
13541	RRM2B	1.062479e-01
13542	RRN3	4.571001e-01
13543	RRP1	5.945919e-01
13544	RRP12	9.675911e-01
13545	RRP15	3.462485e-02
13546	RRP1B	9.004303e-01
13547	RRP7A	6.874018e-01
13548	RRP8	6.178160e-01
13549	RRP9	8.681500e-01
13550	RRS1	7.239034e-01
13551	RS1	1
13552	RSAD1	1.985473e-01
13553	RSAD2	1.535055e-02
13554	RSBN1	1
13555	RSBN1L	8.410378e-01
13556	RSC1A1	4.761585e-01
13557	RSF1	1
13558	RSL1D1	1
13559	RSL24D1	1
13560	RSPH1	5.449352e-01
13561	RSPH10B	1
13562	RSPH10B2	1
13563	RSPH3	3.751001e-01
13564	RSPH4A	9.463612e-01
13565	RSPH6A	1.173985e-01
13566	RSPH9	1
13567	RSPO1	5.914486e-01
13568	RSPO2	1.510635e-02
13569	RSPO3	2.350455e-01
13570	RSPO4	1
13571	RSPRY1	1
Done

Running MutSig 2:
Scatter job 150: processing genes 13481 - 13571
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
RPTN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.626257e-02	ci left: 5.289696e-01	ci right 5.486078e-01	k: 5388	n:10000
Cons ci ratio: 6.577260e-02	ci left: 2.534019e-01	ci right 2.707369e-01	k: 2620	n:10000
KS ci ratio: 2.064286e-02	ci left: 7.746878e-01	ci right 7.909471e-01	k: 7829	n:10000
RPTN   10000 perm   2 sec   (5210 perm/sec)   p_kst 7.829000e-01   p_cons 2.620000e-01   p_joint 5.388000e-01

Outputting figure to mutsig2_images.part000000000150/RPTN.8_2363_10000_0.7829_0.262_0.5388.png
                gene_name: RPTN
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 4 percent done.
RSBN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.307472e-03	ci left: 9.627847e-01	ci right 9.699403e-01	k: 9665	n:10000
KS ci ratio: 1.445804e-02	ci left: 8.737768e-01	ci right 8.866008e-01	k: 8803	n:10000
RSBN1   10000 perm   2 sec   (5945 perm/sec)   p_kst 8.803000e-01   p_cons 9.665000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000150/RSBN1.7_2437_10000_0.8803_0.9665_1.png
                gene_name: RSBN1
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 7 percent done.
RSPO2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.388181e-02	ci left: 3.366725e-01	ci right 3.554172e-01	k: 3460	n:10000
Cons ci ratio: 2.566713e-02	ci left: 6.908102e-01	ci right 7.088733e-01	k: 6999	n:10000
KS ci ratio: 6.983219e-02	ci left: 2.311621e-01	ci right 2.479899e-01	k: 2395	n:10000
RSPO2   10000 perm   2 sec   (6041 perm/sec)   p_kst 2.395000e-01   p_cons 6.999000e-01   p_joint 3.460000e-01

Outputting figure to mutsig2_images.part000000000150/RSPO2.7_752_10000_0.2395_0.6999_0.346.png
                gene_name: RSPO2
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 11 percent done.
RPS6KA2
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside exons of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.510425e-01	ci left: 5.831582e-02	ci right 6.794061e-02	k: 630	n:10000
Cons ci ratio: 1.743772e-01	ci left: 4.389243e-02	ci right 5.237330e-02	k: 480	n:10000
KS ci ratio: 1.009147e-01	ci left: 1.244452e-01	ci right 1.377705e-01	k: 1310	n:10000
RPS6KA2   10000 perm   2 sec   (4914 perm/sec)   p_kst 1.310000e-01   p_cons 4.800000e-02   p_joint 6.300000e-02

Joint ci ratio: 1.011864e-01	ci left: 6.625749e-02	ci right 7.336820e-02	k: 1395	n:20000
Cons ci ratio: 1.285902e-01	ci left: 4.153824e-02	ci right 4.729516e-02	k: 887	n:20000
KS ci ratio: 7.167364e-02	ci left: 1.254174e-01	ci right 1.347904e-01	k: 2601	n:20000
RPS6KA2   20000 perm   4 sec   (4757 perm/sec)   p_kst 1.300500e-01   p_cons 4.435000e-02   p_joint 6.975000e-02

Joint ci ratio: 8.454467e-02	ci left: 6.403277e-02	ci right 6.971813e-02	k: 2005	n:30000
Cons ci ratio: 1.042592e-01	ci left: 4.264917e-02	ci right 4.737279e-02	k: 1349	n:30000
KS ci ratio: 5.788398e-02	ci left: 1.287484e-01	ci right 1.364562e-01	k: 3977	n:30000
RPS6KA2   30000 perm   6 sec   (4668 perm/sec)   p_kst 1.325667e-01   p_cons 4.496667e-02   p_joint 6.683333e-02

Joint ci ratio: 7.839810e-02	ci left: 5.651418e-02	ci right 6.115012e-02	k: 2352	n:40000
Cons ci ratio: 8.977046e-02	ci left: 4.345383e-02	ci right 4.756248e-02	k: 1819	n:40000
KS ci ratio: 4.939620e-02	ci left: 1.326547e-01	ci right 1.393982e-01	k: 5440	n:40000
RPS6KA2   40000 perm   9 sec   (4576 perm/sec)   p_kst 1.360000e-01   p_cons 4.547500e-02   p_joint 5.880000e-02

Outputting figure to mutsig2_images.part000000000150/RPS6KA2.5_2417_40000_0.136_0.045475_0.0588.png
                gene_name: RPS6KA2
               theta_stop: 0.090 
                    nperm: 40000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.045 
      ci_cons_bounds_left: 0.043 
     ci_cons_bounds_right: 0.048 
                  p_joint: 0.059 
     ci_joint_bounds_left: 0.057 
    ci_joint_bounds_right: 0.061 

Current progress: 14 percent done.
RPS6KC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.574622e-02	ci left: 8.541665e-01	ci right 8.678225e-01	k: 8611	n:10000
Cons ci ratio: 5.512284e-03	ci left: 9.778092e-01	ci right 9.833058e-01	k: 9807	n:10000
KS ci ratio: 3.077713e-02	ci left: 6.089964e-01	ci right 6.281345e-01	k: 6186	n:10000
RPS6KC1   10000 perm   2 sec   (5041 perm/sec)   p_kst 6.186000e-01   p_cons 9.807000e-01   p_joint 8.611000e-01

Outputting figure to mutsig2_images.part000000000150/RPS6KC1.6_3261_10000_0.6186_0.9807_0.8611.png
                gene_name: RPS6KC1
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 18 percent done.
RREB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.062823e-02	ci left: 2.857752e-01	ci right 3.037445e-01	k: 2947	n:10000
Cons ci ratio: 3.969102e-02	ci left: 4.838540e-01	ci right 5.035497e-01	k: 4937	n:10000
KS ci ratio: 9.302001e-02	ci left: 1.437406e-01	ci right 1.578635e-01	k: 1507	n:10000
RREB1   10000 perm   2 sec   (5211 perm/sec)   p_kst 1.507000e-01   p_cons 4.937000e-01   p_joint 2.947000e-01

Outputting figure to mutsig2_images.part000000000150/RREB1.6_5269_10000_0.1507_0.4937_0.2947.png
                gene_name: RREB1
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 21 percent done.
RSPH6A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.861344e-01	ci left: 8.233934e-03	ci right 1.225906e-02	k: 101	n:10000
Cons ci ratio: 2.613506e-01	ci left: 1.912136e-02	ci right 2.496169e-02	k: 219	n:10000
KS ci ratio: 3.842359e-01	ci left: 8.324320e-03	ci right 1.236857e-02	k: 102	n:10000
RSPH6A   10000 perm   2 sec   (5494 perm/sec)   p_kst 1.020000e-02   p_cons 2.190000e-02   p_joint 1.010000e-02

Joint ci ratio: 3.693575e-01	ci left: 4.567803e-03	ci right 6.679840e-03	k: 111	n:20000
Cons ci ratio: 1.878865e-01	ci left: 1.929613e-02	ci right 2.334471e-02	k: 425	n:20000
KS ci ratio: 2.684301e-01	ci left: 9.133859e-03	ci right 1.201110e-02	k: 210	n:20000
RSPH6A   20000 perm   4 sec   (5131 perm/sec)   p_kst 1.050000e-02   p_cons 2.125000e-02   p_joint 5.550000e-03

Joint ci ratio: 3.305211e-01	ci left: 3.896494e-03	ci right 5.468466e-03	k: 139	n:30000
Cons ci ratio: 1.555373e-01	ci left: 1.911875e-02	ci right 2.237499e-02	k: 621	n:30000
KS ci ratio: 2.222095e-01	ci left: 9.125451e-03	ci right 1.143753e-02	k: 307	n:30000
RSPH6A   30000 perm   6 sec   (4948 perm/sec)   p_kst 1.023333e-02   p_cons 2.070000e-02   p_joint 4.633333e-03

Joint ci ratio: 1.835398e-01	ci left: 1.023953e-02	ci right 1.233232e-02	k: 450	n:40000
Cons ci ratio: 1.329372e-01	ci left: 1.985904e-02	ci right 2.271105e-02	k: 850	n:40000
KS ci ratio: 1.945245e-01	ci left: 9.071922e-03	ci right 1.105018e-02	k: 401	n:40000
RSPH6A   40000 perm   8 sec   (4758 perm/sec)   p_kst 1.002500e-02   p_cons 2.125000e-02   p_joint 1.125000e-02

Joint ci ratio: 2.008575e-01	ci left: 6.800464e-03	ci right 8.337538e-03	k: 377	n:50000
Cons ci ratio: 1.194635e-01	ci left: 1.981931e-02	ci right 2.235671e-02	k: 1053	n:50000
KS ci ratio: 1.733795e-01	ci left: 9.242099e-03	ci right 1.101547e-02	k: 505	n:50000
RSPH6A   50000 perm   11 sec   (4667 perm/sec)   p_kst 1.010000e-02   p_cons 2.106000e-02   p_joint 7.540000e-03

Joint ci ratio: 1.950986e-01	ci left: 6.031146e-03	ci right 7.350583e-03	k: 400	n:60000
Cons ci ratio: 1.082619e-01	ci left: 2.022448e-02	ci right 2.255547e-02	k: 1282	n:60000
KS ci ratio: 1.582997e-01	ci left: 9.315360e-03	ci right 1.093255e-02	k: 606	n:60000
RSPH6A   60000 perm   13 sec   (4564 perm/sec)   p_kst 1.010000e-02   p_cons 2.136667e-02   p_joint 6.666667e-03

Joint ci ratio: 1.573726e-01	ci left: 8.093957e-03	ci right 9.490075e-03	k: 614	n:70000
Cons ci ratio: 9.914794e-02	ci left: 2.075880e-02	ci right 2.293822e-02	k: 1528	n:70000
KS ci ratio: 1.468894e-01	ci left: 9.331199e-03	ci right 1.082412e-02	k: 704	n:70000
RSPH6A   70000 perm   16 sec   (4493 perm/sec)   p_kst 1.005714e-02   p_cons 2.182857e-02   p_joint 8.771429e-03

Joint ci ratio: 1.590310e-01	ci left: 6.937816e-03	ci right 8.148308e-03	k: 602	n:80000
Cons ci ratio: 9.294666e-02	ci left: 2.073812e-02	ci right 2.277177e-02	k: 1739	n:80000
KS ci ratio: 1.378104e-01	ci left: 9.322086e-03	ci right 1.071379e-02	k: 800	n:80000
RSPH6A   80000 perm   19 sec   (4320 perm/sec)   p_kst 1.000000e-02   p_cons 2.173750e-02   p_joint 7.525000e-03

Joint ci ratio: 1.635248e-01	ci left: 5.825462e-03	ci right 6.873405e-03	k: 570	n:90000
Cons ci ratio: 8.745989e-02	ci left: 2.087758e-02	ci right 2.279785e-02	k: 1964	n:90000
KS ci ratio: 1.299381e-01	ci left: 9.360229e-03	ci right 1.067164e-02	k: 900	n:90000
RSPH6A   90000 perm   21 sec   (4257 perm/sec)   p_kst 1.000000e-02   p_cons 2.182222e-02   p_joint 6.333333e-03

Joint ci ratio: 1.594181e-01	ci left: 5.530725e-03	ci right 6.498265e-03	k: 600	n:100000
Cons ci ratio: 8.301714e-02	ci left: 2.090380e-02	ci right 2.272408e-02	k: 2180	n:100000
KS ci ratio: 1.226597e-01	ci left: 9.489509e-03	ci right 1.073915e-02	k: 1010	n:100000
RSPH6A   100000 perm   24 sec   (4199 perm/sec)   p_kst 1.010000e-02   p_cons 2.180000e-02   p_joint 6.000000e-03

Joint ci ratio: 1.380006e-01	ci left: 6.779078e-03	ci right 7.792615e-03	k: 800	n:110000
Cons ci ratio: 7.644642e-02	ci left: 2.245225e-02	ci right 2.424573e-02	k: 2567	n:110000
KS ci ratio: 1.172768e-01	ci left: 9.464544e-03	ci right 1.065241e-02	k: 1105	n:110000
RSPH6A   110000 perm   27 sec   (4132 perm/sec)   p_kst 1.004545e-02   p_cons 2.333636e-02   p_joint 7.272727e-03

Joint ci ratio: 1.093268e-01	ci left: 1.002015e-02	ci right 1.118701e-02	k: 1271	n:120000
Cons ci ratio: 7.295831e-02	ci left: 2.263390e-02	ci right 2.435590e-02	k: 2818	n:120000
KS ci ratio: 1.121220e-01	ci left: 9.517655e-03	ci right 1.065621e-02	k: 1209	n:120000
RSPH6A   120000 perm   29 sec   (4078 perm/sec)   p_kst 1.007500e-02   p_cons 2.348333e-02   p_joint 1.059167e-02

Joint ci ratio: 9.764214e-02	ci left: 1.164784e-02	ci right 1.285099e-02	k: 1591	n:130000
Cons ci ratio: 7.242409e-02	ci left: 2.123969e-02	ci right 2.284327e-02	k: 2864	n:130000
KS ci ratio: 1.073449e-01	ci left: 9.608486e-03	ci right 1.070584e-02	k: 1319	n:130000
RSPH6A   130000 perm   32 sec   (4022 perm/sec)   p_kst 1.014615e-02   p_cons 2.203077e-02   p_joint 1.223846e-02

Joint ci ratio: 8.844930e-02	ci left: 1.322337e-02	ci right 1.445403e-02	k: 1936	n:140000
Cons ci ratio: 6.979407e-02	ci left: 2.126606e-02	ci right 2.281096e-02	k: 3084	n:140000
KS ci ratio: 1.026960e-01	ci left: 9.770752e-03	ci right 1.083539e-02	k: 1441	n:140000
RSPH6A   140000 perm   35 sec   (3969 perm/sec)   p_kst 1.029286e-02   p_cons 2.202857e-02   p_joint 1.382857e-02

Joint ci ratio: 8.959841e-02	ci left: 1.203512e-02	ci right 1.317050e-02	k: 1889	n:150000
Cons ci ratio: 6.731675e-02	ci left: 2.136196e-02	ci right 2.285659e-02	k: 3315	n:150000
KS ci ratio: 9.924628e-02	ci left: 9.782200e-03	ci right 1.081019e-02	k: 1543	n:150000
RSPH6A   150000 perm   38 sec   (3919 perm/sec)   p_kst 1.028667e-02   p_cons 2.210000e-02   p_joint 1.259333e-02

Outputting figure to mutsig2_images.part000000000150/RSPH6A.6_2178_150000_0.010287_0.0221_0.012593.png
                gene_name: RSPH6A
               theta_stop: 0.099 
                    nperm: 150000 
                     p_ks: 0.010 
        ci_ks_bounds_left: 0.0098 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.022 
      ci_cons_bounds_left: 0.021 
     ci_cons_bounds_right: 0.023 
                  p_joint: 0.013 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.013 

Current progress: 25 percent done.
RPS6KA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.976252e-02	ci left: 4.829545e-01	ci right 5.026497e-01	k: 4928	n:10000
KS ci ratio: 2.369416e-02	ci left: 7.236062e-01	ci right 7.410582e-01	k: 7324	n:10000
RPS6KA6   10000 perm   2 sec   (5654 perm/sec)   p_kst 7.324000e-01   p_cons 4.928000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000150/RPS6KA6.5_2326_10000_0.7324_0.4928_1.png
                gene_name: RPS6KA6
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 29 percent done.
RSAD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.079470e-01	ci left: 1.101767e-01	ci right 1.228477e-01	k: 1164	n:10000
Cons ci ratio: 2.349480e-02	ci left: 7.269395e-01	ci right 7.443230e-01	k: 7357	n:10000
KS ci ratio: 1.833676e-01	ci left: 3.968114e-02	ci right 4.778736e-02	k: 436	n:10000
RSAD2   10000 perm   1 sec   (6816 perm/sec)   p_kst 4.360000e-02   p_cons 7.357000e-01   p_joint 1.164000e-01

Joint ci ratio: 8.452258e-02	ci left: 9.298115e-02	ci right 1.012364e-01	k: 1941	n:20000
Cons ci ratio: 1.674602e-02	ci left: 7.264074e-01	ci right 7.387249e-01	k: 14652	n:20000
KS ci ratio: 1.307624e-01	ci left: 4.018178e-02	ci right 4.585205e-02	k: 859	n:20000
RSAD2   20000 perm   3 sec   (6182 perm/sec)   p_kst 4.295000e-02   p_cons 7.326000e-01   p_joint 9.705000e-02

Joint ci ratio: 7.857782e-02	ci left: 7.358219e-02	ci right 7.963344e-02	k: 2297	n:30000
Cons ci ratio: 1.430492e-02	ci left: 7.093854e-01	ci right 7.196397e-01	k: 21436	n:30000
KS ci ratio: 1.064664e-01	ci left: 4.092707e-02	ci right 4.556191e-02	k: 1296	n:30000
RSAD2   30000 perm   5 sec   (5889 perm/sec)   p_kst 4.320000e-02   p_cons 7.145333e-01   p_joint 7.656667e-02

Joint ci ratio: 7.210721e-02	ci left: 6.631382e-02	ci right 7.129900e-02	k: 2751	n:40000
Cons ci ratio: 1.239556e-02	ci left: 7.098450e-01	ci right 7.187239e-01	k: 28572	n:40000
KS ci ratio: 9.235189e-02	ci left: 4.110612e-02	ci right 4.511056e-02	k: 1723	n:40000
RSAD2   40000 perm   7 sec   (5718 perm/sec)   p_kst 4.307500e-02   p_cons 7.143000e-01   p_joint 6.877500e-02

Outputting figure to mutsig2_images.part000000000150/RSAD2.5_1110_40000_0.043075_0.7143_0.068775.png
                gene_name: RSAD2
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.043 
        ci_ks_bounds_left: 0.041 
       ci_ks_bounds_right: 0.045 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.069 
     ci_joint_bounds_left: 0.066 
    ci_joint_bounds_right: 0.071 

Current progress: 32 percent done.
RPS6KA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.790644e-02	ci left: 5.068520e-01	ci right 5.265383e-01	k: 5167	n:10000
Cons ci ratio: 3.644533e-02	ci left: 5.264667e-01	ci right 5.461122e-01	k: 5363	n:10000
KS ci ratio: 6.448821e-02	ci left: 2.610197e-01	ci right 2.785146e-01	k: 2697	n:10000
RPS6KA5   10000 perm   2 sec   (6403 perm/sec)   p_kst 2.697000e-01   p_cons 5.363000e-01   p_joint 5.167000e-01

Outputting figure to mutsig2_images.part000000000150/RPS6KA5.4_2483_10000_0.2697_0.5363_0.5167.png
                gene_name: RPS6KA5
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 36 percent done.
RPTOR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.853352e-02	ci left: 4.986503e-01	ci right 5.183447e-01	k: 5085	n:10000
Cons ci ratio: 6.592598e-02	ci left: 2.525117e-01	ci right 2.698276e-01	k: 2611	n:10000
KS ci ratio: 4.177090e-02	ci left: 4.583805e-01	ci right 4.780380e-01	k: 4682	n:10000
RPTOR   10000 perm   2 sec   (5400 perm/sec)   p_kst 4.682000e-01   p_cons 2.611000e-01   p_joint 5.085000e-01

Outputting figure to mutsig2_images.part000000000150/RPTOR.4_4144_10000_0.4682_0.2611_0.5085.png
                gene_name: RPTOR
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 39 percent done.
RRN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.055786e-02	ci left: 7.761063e-01	ci right 7.923278e-01	k: 7843	n:10000
Cons ci ratio: 3.120469e-03	ci left: 9.920588e-01	ci right 9.952433e-01	k: 9938	n:10000
KS ci ratio: 4.247362e-02	ci left: 4.500946e-01	ci right 4.697287e-01	k: 4599	n:10000
RRN3   10000 perm   2 sec   (6555 perm/sec)   p_kst 4.599000e-01   p_cons 9.938000e-01   p_joint 7.843000e-01

Outputting figure to mutsig2_images.part000000000150/RRN3.4_2028_10000_0.4599_0.9938_0.7843.png
                gene_name: RRN3
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.79 

Current progress: 43 percent done.
RRP15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.954487e-02	ci left: 3.753480e-01	ci right 3.945190e-01	k: 3849	n:10000
Cons ci ratio: 1.518969e-03	ci left: 9.976522e-01	ci right 9.992344e-01	k: 9986	n:10000
KS ci ratio: 6.514930e-02	ci left: 2.570620e-01	ci right 2.744747e-01	k: 2657	n:10000
RRP15   10000 perm   1 sec   (7220 perm/sec)   p_kst 2.657000e-01   p_cons 9.986000e-01   p_joint 3.849000e-01

Outputting figure to mutsig2_images.part000000000150/RRP15.4_869_10000_0.2657_0.9986_0.3849.png
                gene_name: RRP15
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.39 

Current progress: 46 percent done.
RRM2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.289722e-02	ci left: 7.369431e-01	ci right 7.541136e-01	k: 7456	n:10000
Cons ci ratio: 4.563429e-02	ci left: 4.147857e-01	ci right 4.342583e-01	k: 4245	n:10000
KS ci ratio: 2.454756e-02	ci left: 7.093708e-01	ci right 7.271019e-01	k: 7183	n:10000
RRM2B   10000 perm   1 sec   (6842 perm/sec)   p_kst 7.183000e-01   p_cons 4.245000e-01   p_joint 7.456000e-01

Outputting figure to mutsig2_images.part000000000150/RRM2B.3_1360_10000_0.7183_0.4245_0.7456.png
                gene_name: RRM2B
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.75 

Current progress: 50 percent done.
RSAD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.104908e-02	ci left: 7.679013e-01	ci right 7.843376e-01	k: 7762	n:10000
Cons ci ratio: 1.577252e-02	ci left: 8.537584e-01	ci right 8.674308e-01	k: 8607	n:10000
KS ci ratio: 3.481326e-02	ci left: 5.492026e-01	ci right 5.687630e-01	k: 5590	n:10000
RSAD1   10000 perm   1 sec   (7046 perm/sec)   p_kst 5.590000e-01   p_cons 8.607000e-01   p_joint 7.762000e-01

Outputting figure to mutsig2_images.part000000000150/RSAD1.3_1365_10000_0.559_0.8607_0.7762.png
                gene_name: RSAD1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 54 percent done.
RSBN1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.474170e-02	ci left: 7.061416e-01	ci right 7.239330e-01	k: 7151	n:10000
KS ci ratio: 2.222147e-02	ci left: 7.482674e-01	ci right 7.651828e-01	k: 7568	n:10000
RSBN1L   10000 perm   2 sec   (6171 perm/sec)   p_kst 7.568000e-01   p_cons 7.151000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000150/RSBN1L.3_2573_10000_0.7568_0.7151_1.png
                gene_name: RSBN1L
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 57 percent done.
RSC1A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.650079e-02	ci left: 6.771026e-01	ci right 6.953888e-01	k: 6863	n:10000
Cons ci ratio: 5.646737e-02	ci left: 3.159213e-01	ci right 3.343806e-01	k: 3251	n:10000
KS ci ratio: 1.428612e-02	ci left: 8.763339e-01	ci right 8.890423e-01	k: 8828	n:10000
RSC1A1   10000 perm   1 sec   (7029 perm/sec)   p_kst 8.828000e-01   p_cons 3.251000e-01   p_joint 6.863000e-01

Outputting figure to mutsig2_images.part000000000150/RSC1A1.3_1857_10000_0.8828_0.3251_0.6863.png
                gene_name: RSC1A1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 61 percent done.
RSF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.871795e-02	ci left: 1.908194e-01	ci right 2.065565e-01	k: 1986	n:10000
Cons ci ratio: 9.093456e-02	ci left: 1.495278e-01	ci right 1.638728e-01	k: 1566	n:10000
KS ci ratio: 5.657045e-02	ci left: 3.151274e-01	ci right 3.335750e-01	k: 3243	n:10000
RSF1   10000 perm   2 sec   (5374 perm/sec)   p_kst 3.243000e-01   p_cons 1.566000e-01   p_joint 1.986000e-01

Outputting figure to mutsig2_images.part000000000150/RSF1.3_4390_10000_0.3243_0.1566_0.1986.png
                gene_name: RSF1
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 64 percent done.
RSPH3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.191234e-01	ci left: 9.185115e-02	ci right 1.035844e-01	k: 976	n:10000
Cons ci ratio: 4.409943e-02	ci left: 4.315362e-01	ci right 4.510980e-01	k: 4413	n:10000
KS ci ratio: 1.557042e-01	ci left: 5.494237e-02	ci right 6.431621e-02	k: 595	n:10000
RSPH3   10000 perm   2 sec   (6340 perm/sec)   p_kst 5.950000e-02   p_cons 4.413000e-01   p_joint 9.760000e-02

Joint ci ratio: 7.465500e-02	ci left: 1.166089e-01	ci right 1.257016e-01	k: 2422	n:20000
Cons ci ratio: 3.128710e-02	ci left: 4.328052e-01	ci right 4.466123e-01	k: 8794	n:20000
KS ci ratio: 1.099059e-01	ci left: 5.650427e-02	ci right 6.312442e-02	k: 1195	n:20000
RSPH3   20000 perm   3 sec   (5752 perm/sec)   p_kst 5.975000e-02   p_cons 4.397000e-01   p_joint 1.211000e-01

Joint ci ratio: 6.857052e-02	ci left: 9.485493e-02	ci right 1.016231e-01	k: 2946	n:30000
Cons ci ratio: 2.551202e-02	ci left: 4.347385e-01	ci right 4.460064e-01	k: 13211	n:30000
KS ci ratio: 8.952635e-02	ci left: 5.737130e-02	ci right 6.278095e-02	k: 1801	n:30000
RSPH3   30000 perm   5 sec   (5501 perm/sec)   p_kst 6.003333e-02   p_cons 4.403667e-01   p_joint 9.820000e-02

Outputting figure to mutsig2_images.part000000000150/RSPH3.3_1715_30000_0.060033_0.44037_0.0982.png
                gene_name: RSPH3
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.060 
        ci_ks_bounds_left: 0.057 
       ci_ks_bounds_right: 0.063 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.098 
     ci_joint_bounds_left: 0.095 
    ci_joint_bounds_right: 0.10 

Current progress: 68 percent done.
RSPRY1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.256539e-02	ci left: 7.425032e-01	ci right 7.595503e-01	k: 7511	n:10000
Cons ci ratio: 2.881942e-02	ci left: 6.396537e-01	ci right 6.584594e-01	k: 6491	n:10000
KS ci ratio: 3.096655e-02	ci left: 6.060836e-01	ci right 6.252490e-01	k: 6157	n:10000
RSPRY1   10000 perm   2 sec   (6424 perm/sec)   p_kst 6.157000e-01   p_cons 6.491000e-01   p_joint 7.511000e-01

Outputting figure to mutsig2_images.part000000000150/RSPRY1.3_1787_10000_0.6157_0.6491_0.7511.png
                gene_name: RSPRY1
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 71 percent done.
RPS6KA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.449503e-02	ci left: 4.271481e-01	ci right 4.466887e-01	k: 4369	n:10000
Cons ci ratio: 3.444063e-02	ci left: 5.545140e-01	ci right 5.740485e-01	k: 5643	n:10000
KS ci ratio: 1.343015e-01	ci left: 7.320496e-02	ci right 8.384211e-02	k: 784	n:10000
RPS6KA1   10000 perm   2 sec   (6315 perm/sec)   p_kst 7.840000e-02   p_cons 5.643000e-01   p_joint 4.369000e-01

Joint ci ratio: 4.560614e-02	ci left: 2.635581e-01	ci right 2.759089e-01	k: 5394	n:20000
Cons ci ratio: 2.443404e-02	ci left: 5.557915e-01	ci right 5.695903e-01	k: 11254	n:20000
KS ci ratio: 9.460828e-02	ci left: 7.529807e-02	ci right 8.282484e-02	k: 1580	n:20000
RPS6KA1   20000 perm   4 sec   (5698 perm/sec)   p_kst 7.900000e-02   p_cons 5.627000e-01   p_joint 2.697000e-01

Outputting figure to mutsig2_images.part000000000150/RPS6KA1.2_2435_20000_0.079_0.5627_0.2697.png
                gene_name: RPS6KA1
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.079 
        ci_ks_bounds_left: 0.075 
       ci_ks_bounds_right: 0.083 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 75 percent done.
RPUSD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.336799e-02	ci left: 7.290610e-01	ci right 7.464003e-01	k: 7378	n:10000
Cons ci ratio: 7.570976e-02	ci left: 2.033338e-01	ci right 2.194347e-01	k: 2113	n:10000
KS ci ratio: 4.466723e-02	ci left: 4.252535e-01	ci right 4.447844e-01	k: 4350	n:10000
RPUSD1   10000 perm   1 sec   (7481 perm/sec)   p_kst 4.350000e-01   p_cons 2.113000e-01   p_joint 7.378000e-01

Outputting figure to mutsig2_images.part000000000150/RPUSD1.2_959_10000_0.435_0.2113_0.7378.png
                gene_name: RPUSD1
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 79 percent done.
RPUSD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.541838e-01	ci left: 9.958933e-03	ci right 1.433217e-02	k: 120	n:10000
Cons ci ratio: 1.313289e-01	ci left: 7.640391e-02	ci right 8.724117e-02	k: 817	n:10000
KS ci ratio: 2.650703e-01	ci left: 1.856024e-02	ci right 2.432325e-02	k: 213	n:10000
RPUSD4   10000 perm   1 sec   (7143 perm/sec)   p_kst 2.130000e-02   p_cons 8.170000e-02   p_joint 1.200000e-02

Joint ci ratio: 1.580186e-01	ci left: 2.748703e-02	ci right 3.225095e-02	k: 596	n:20000
Cons ci ratio: 9.264975e-02	ci left: 7.833140e-02	ci right 8.599059e-02	k: 1642	n:20000
KS ci ratio: 1.852381e-01	ci left: 1.986864e-02	ci right 2.397200e-02	k: 437	n:20000
RPUSD4   20000 perm   3 sec   (6495 perm/sec)   p_kst 2.185000e-02   p_cons 8.210000e-02   p_joint 2.980000e-02

Joint ci ratio: 1.278139e-01	ci left: 2.845385e-02	ci right 3.237112e-02	k: 911	n:30000
Cons ci ratio: 7.606138e-02	ci left: 7.823141e-02	ci right 8.444995e-02	k: 2439	n:30000
KS ci ratio: 1.521975e-01	ci left: 1.998476e-02	ci right 2.330878e-02	k: 648	n:30000
RPUSD4   30000 perm   5 sec   (6189 perm/sec)   p_kst 2.160000e-02   p_cons 8.130000e-02   p_joint 3.036667e-02

Joint ci ratio: 1.022363e-01	ci left: 3.363478e-02	ci right 3.728306e-02	k: 1417	n:40000
Cons ci ratio: 6.585295e-02	ci left: 7.868896e-02	ci right 8.407199e-02	k: 3254	n:40000
KS ci ratio: 1.319114e-01	ci left: 2.017348e-02	ci right 2.304655e-02	k: 863	n:40000
RPUSD4   40000 perm   7 sec   (5973 perm/sec)   p_kst 2.157500e-02   p_cons 8.135000e-02   p_joint 3.542500e-02

Joint ci ratio: 6.668621e-02	ci left: 6.248035e-02	ci right 6.681036e-02	k: 3231	n:50000
Cons ci ratio: 5.871054e-02	ci left: 7.945159e-02	ci right 8.427708e-02	k: 4092	n:50000
KS ci ratio: 1.173759e-01	ci left: 2.053783e-02	ci right 2.311810e-02	k: 1090	n:50000
RPUSD4   50000 perm   9 sec   (5799 perm/sec)   p_kst 2.180000e-02   p_cons 8.184000e-02   p_joint 6.462000e-02

Joint ci ratio: 8.287192e-02	ci left: 3.445821e-02	ci right 3.745356e-02	k: 2156	n:60000
Cons ci ratio: 5.398887e-02	ci left: 7.858196e-02	ci right 8.295869e-02	k: 4845	n:60000
KS ci ratio: 1.083914e-01	ci left: 2.017581e-02	ci right 2.250415e-02	k: 1279	n:60000
RPUSD4   60000 perm   11 sec   (5645 perm/sec)   p_kst 2.131667e-02   p_cons 8.075000e-02   p_joint 3.593333e-02

Joint ci ratio: 4.668598e-02	ci left: 8.935983e-02	ci right 9.364553e-02	k: 6404	n:70000
Cons ci ratio: 4.971508e-02	ci left: 7.953990e-02	ci right 8.360915e-02	k: 5709	n:70000
KS ci ratio: 9.971613e-02	ci left: 2.052186e-02	ci right 2.268947e-02	k: 1511	n:70000
RPUSD4   70000 perm   13 sec   (5526 perm/sec)   p_kst 2.158571e-02   p_cons 8.155714e-02   p_joint 9.148571e-02

Outputting figure to mutsig2_images.part000000000150/RPUSD4.2_1162_70000_0.021586_0.081557_0.091486.png
                gene_name: RPUSD4
               theta_stop: 0.100 
                    nperm: 70000 
                     p_ks: 0.022 
        ci_ks_bounds_left: 0.021 
       ci_ks_bounds_right: 0.023 
                   p_cons: 0.082 
      ci_cons_bounds_left: 0.080 
     ci_cons_bounds_right: 0.084 
                  p_joint: 0.091 
     ci_joint_bounds_left: 0.089 
    ci_joint_bounds_right: 0.094 

Current progress: 82 percent done.
RRAS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.034940e-02	ci left: 3.677867e-01	ci right 3.868848e-01	k: 3773	n:10000
KS ci ratio: 4.446792e-02	ci left: 4.274473e-01	ci right 4.469893e-01	k: 4372	n:10000
RRAS2   10000 perm   1 sec   (7446 perm/sec)   p_kst 4.372000e-01   p_cons 3.773000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000150/RRAS2.2_646_10000_0.4372_0.3773_1.png
                gene_name: RRAS2
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
RRBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.326693e-02	ci left: 2.685418e-01	ci right 2.861881e-01	k: 2773	n:10000
Cons ci ratio: 1.499047e-01	ci left: 5.918397e-02	ci right 6.887191e-02	k: 639	n:10000
KS ci ratio: 2.616291e-02	ci left: 6.826450e-01	ci right 7.008432e-01	k: 6918	n:10000
RRBP1   10000 perm   2 sec   (6052 perm/sec)   p_kst 6.918000e-01   p_cons 6.390000e-02   p_joint 2.773000e-01

Joint ci ratio: 4.162097e-02	ci left: 3.008098e-01	ci right 3.136463e-01	k: 6144	n:20000
Cons ci ratio: 1.073971e-01	ci left: 5.908656e-02	ci right 6.584133e-02	k: 1248	n:20000
KS ci ratio: 1.851137e-02	ci left: 6.850966e-01	ci right 6.979476e-01	k: 13831	n:20000
RRBP1   20000 perm   4 sec   (5544 perm/sec)   p_kst 6.915500e-01   p_cons 6.240000e-02   p_joint 3.072000e-01

Joint ci ratio: 3.901598e-02	ci left: 2.468297e-01	ci right 2.566851e-01	k: 7552	n:30000
Cons ci ratio: 8.765260e-02	ci left: 5.975402e-02	ci right 6.526442e-02	k: 1874	n:30000
KS ci ratio: 1.518729e-02	ci left: 6.842293e-01	ci right 6.947339e-01	k: 20685	n:30000
RRBP1   30000 perm   6 sec   (5323 perm/sec)   p_kst 6.895000e-01   p_cons 6.246667e-02   p_joint 2.517333e-01

Outputting figure to mutsig2_images.part000000000150/RRBP1.2_3030_30000_0.6895_0.062467_0.25173.png
                gene_name: RRBP1
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.062 
      ci_cons_bounds_left: 0.060 
     ci_cons_bounds_right: 0.065 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 89 percent done.
RRP12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.668042e-02	ci left: 5.232632e-01	ci right 5.429175e-01	k: 5331	n:10000
Cons ci ratio: 3.169744e-02	ci left: 5.949377e-01	ci right 6.142014e-01	k: 6046	n:10000
KS ci ratio: 5.886768e-02	ci left: 2.980661e-01	ci right 3.162464e-01	k: 3071	n:10000
RRP12   10000 perm   2 sec   (5782 perm/sec)   p_kst 3.071000e-01   p_cons 6.046000e-01   p_joint 5.331000e-01

Outputting figure to mutsig2_images.part000000000150/RRP12.2_4030_10000_0.3071_0.6046_0.5331.png
                gene_name: RRP12
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 93 percent done.
RRP8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.321513e-02	ci left: 8.919018e-01	ci right 9.038653e-01	k: 8980	n:10000
Cons ci ratio: 5.833270e-02	ci left: 3.019334e-01	ci right 3.201768e-01	k: 3110	n:10000
KS ci ratio: 2.693242e-02	ci left: 6.700507e-01	ci right 6.884448e-01	k: 6793	n:10000
RRP8   10000 perm   1 sec   (6746 perm/sec)   p_kst 6.793000e-01   p_cons 3.110000e-01   p_joint 8.980000e-01

Outputting figure to mutsig2_images.part000000000150/RRP8.2_1399_10000_0.6793_0.311_0.898.png
                gene_name: RRP8
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 96 percent done.
RSPO3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.076116e-03	ci left: 9.809150e-01	ci right 9.859977e-01	k: 9836	n:10000
Cons ci ratio: 1.108910e-03	ci left: 9.985583e-01	ci right 9.997185e-01	k: 9993	n:10000
KS ci ratio: 3.969896e-02	ci left: 4.837540e-01	ci right 5.034497e-01	k: 4936	n:10000
RSPO3   10000 perm   1 sec   (7070 perm/sec)   p_kst 4.936000e-01   p_cons 9.993000e-01   p_joint 9.836000e-01

Outputting figure to mutsig2_images.part000000000150/RSPO3.2_839_10000_0.4936_0.9993_0.9836.png
                gene_name: RSPO3
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000150
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 150 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1702>
Subject: Job 8004523: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1702>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000151> was used as the working directory.
Started at Sun Nov 11 15:16:44 2012
Results reported at Sun Nov 11 15:27:29 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000151.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000151.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 151  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000151.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    698.99 sec.
    Max Memory :      4702 MB
    Max Swap   :      7128 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
151
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 151
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 151: processing genes 13572 - 13661
Calculating significance of each gene.
Using projection method.
13572	RSRC1	4.606895e-04
13573	RSRC2	1
13574	RSU1	4.273858e-01
13575	RTBDN	1
13576	RTCD1	1
13577	RTDR1	1
13578	RTEL1	1
13579	RTF1	1
13580	RTKN	8.755462e-01
13581	RTKN2	6.134922e-01
13582	RTN1	7.938751e-05
13583	RTN2	1
13584	RTN3	9.254954e-01
13585	RTN4	8.307452e-01
13586	RTN4IP1	2.866889e-01
13587	RTN4R	1
13588	RTN4RL1	5.226724e-01
13589	RTN4RL2	1
13590	RTP1	2.606075e-01
13591	RTP2	1.298994e-02
13592	RTP3	1.891669e-01
13593	RTP4	1.142481e-01
13594	RTTN	7.305042e-01
13595	RUFY1	7.660951e-01
13596	RUFY2	6.211554e-01
13597	RUFY3	1
13598	RUFY4	1
13599	RUNDC1	7.074380e-01
13600	RUNDC2A	1
13601	RUNDC3A	1
13602	RUNDC3B	1.988641e-01
13603	RUNX1	1
13604	RUNX1T1	2.367682e-03
13605	RUNX2	7.146290e-01
13606	RUNX3	1
13607	RUSC1	9.034079e-01
13608	RUSC2	9.806644e-01
13609	RUVBL1	1.025484e-01
13610	RUVBL2	1
13611	RWDD1	3.198451e-01
13612	RWDD2A	5.561878e-01
13613	RWDD2B	1
13614	RWDD3	1.924056e-01
13615	RWDD4A	1
13616	RXFP1	9.075332e-03
13617	RXFP2	8.420611e-01
13618	RXFP3	3.122268e-03
13619	RXFP4	5.739357e-01
13620	RXRA	1
13621	RXRB	1
13622	RXRG	5.514094e-03
13623	RYBP	4.756334e-01
13624	RYK	1
13625	RYR1	9.991202e-01
13626	RYR2	2.891174e-01
13627	RYR3	1
13628	S100A1	2.782297e-01
13629	S100A10	1
13630	S100A11	1
13631	S100A12	1
13632	S100A13	3.700042e-01
13633	S100A14	1
13634	S100A16	1
13635	S100A2	1
13636	S100A3	1
13637	S100A4	1
13638	S100A5	1
13639	S100A6	1
13640	S100A7	1
13641	S100A7A	1
13642	S100A7L2	1
13643	S100A8	1.258785e-01
13644	S100A9	1
13645	S100B	3.053668e-01
13646	S100G	1
13647	S100P	1
13648	S100PBP	4.422846e-01
13649	S100Z	1
13650	S1PR1	6.928794e-01
13651	S1PR2	4.495694e-01
13652	S1PR3	7.660930e-01
13653	S1PR4	4.908722e-01
13654	S1PR5	6.694574e-01
13655	SAA1	1
13656	SAA2	1
13657	SAA4	1
13658	SAAL1	1
13659	SAC3D1	1
13660	SACM1L	6.279019e-01
13661	SACS	1
Done

Running MutSig 2:
Scatter job 151: processing genes 13572 - 13661
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
RYR2
Processing conservation and coverage...
65% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.894603e-02	ci left: 6.376421e-01	ci right 6.564722e-01	k: 6471	n:10000
Cons ci ratio: 1.663040e-02	ci left: 8.403028e-01	ci right 8.544942e-01	k: 8475	n:10000
KS ci ratio: 3.349092e-02	ci left: 5.682486e-01	ci right 5.877059e-01	k: 5780	n:10000
RYR2   10000 perm   6 sec   (1621 perm/sec)   p_kst 5.780000e-01   p_cons 8.475000e-01   p_joint 6.471000e-01

Outputting figure to mutsig2_images.part000000000151/RYR2.112_15324_10000_0.578_0.8475_0.6471.png
                gene_name: RYR2
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 3 percent done.
RYR3
Processing conservation and coverage...
66% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.650703e-01	ci left: 1.856024e-02	ci right 2.432325e-02	k: 213	n:10000
Cons ci ratio: 5.541639e-02	ci left: 3.241598e-01	ci right 3.427373e-01	k: 3334	n:10000
KS ci ratio: 2.669889e-01	ci left: 1.827990e-02	ci right 2.400381e-02	k: 210	n:10000
RYR3   10000 perm   4 sec   (2610 perm/sec)   p_kst 2.100000e-02   p_cons 3.334000e-01   p_joint 2.130000e-02

Joint ci ratio: 1.312415e-01	ci left: 3.989122e-02	ci right 4.554270e-02	k: 853	n:20000
Cons ci ratio: 4.087049e-02	ci left: 3.085645e-01	ci right 3.214893e-01	k: 6300	n:20000
KS ci ratio: 1.843791e-01	ci left: 2.005956e-02	ci right 2.418100e-02	k: 441	n:20000
RYR3   20000 perm   8 sec   (2407 perm/sec)   p_kst 2.205000e-02   p_cons 3.150000e-01   p_joint 4.265000e-02

Joint ci ratio: 1.246762e-01	ci left: 2.990786e-02	ci right 3.391679e-02	k: 956	n:30000
Cons ci ratio: 3.338740e-02	ci left: 3.095460e-01	ci right 3.200899e-01	k: 9444	n:30000
KS ci ratio: 1.492846e-01	ci left: 2.078729e-02	ci right 2.417273e-02	k: 673	n:30000
RYR3   30000 perm   13 sec   (2326 perm/sec)   p_kst 2.243333e-02   p_cons 3.148000e-01   p_joint 3.186667e-02

Joint ci ratio: 1.092171e-01	ci left: 2.949349e-02	ci right 3.292501e-02	k: 1247	n:40000
Cons ci ratio: 2.892496e-02	ci left: 3.101003e-01	ci right 3.192266e-01	k: 12586	n:40000
KS ci ratio: 1.279559e-01	ci left: 2.145631e-02	ci right 2.441351e-02	k: 916	n:40000
RYR3   40000 perm   18 sec   (2283 perm/sec)   p_kst 2.290000e-02   p_cons 3.146500e-01   p_joint 3.117500e-02

Joint ci ratio: 8.906112e-02	ci left: 3.563636e-02	ci right 3.897763e-02	k: 1864	n:50000
Cons ci ratio: 2.581112e-02	ci left: 3.115869e-01	ci right 3.197545e-01	k: 15783	n:50000
KS ci ratio: 1.147681e-01	ci left: 2.148998e-02	ci right 2.412583e-02	k: 1139	n:50000
RYR3   50000 perm   22 sec   (2258 perm/sec)   p_kst 2.278000e-02   p_cons 3.156600e-01   p_joint 3.728000e-02

Joint ci ratio: 8.135809e-02	ci left: 3.573247e-02	ci right 3.877917e-02	k: 2234	n:60000
Cons ci ratio: 2.535713e-02	ci left: 2.812241e-01	ci right 2.884634e-01	k: 17090	n:60000
KS ci ratio: 1.050440e-01	ci left: 2.149053e-02	ci right 2.388928e-02	k: 1360	n:60000
RYR3   60000 perm   27 sec   (2218 perm/sec)   p_kst 2.266667e-02   p_cons 2.848333e-01   p_joint 3.723333e-02

Joint ci ratio: 7.662199e-02	ci left: 3.466013e-02	ci right 3.743564e-02	k: 2522	n:70000
Cons ci ratio: 2.347903e-02	ci left: 2.814442e-01	ci right 2.881450e-01	k: 19935	n:70000
KS ci ratio: 9.647253e-02	ci left: 2.193008e-02	ci right 2.416684e-02	k: 1612	n:70000
RYR3   70000 perm   32 sec   (2204 perm/sec)   p_kst 2.302857e-02   p_cons 2.847857e-01   p_joint 3.602857e-02

Outputting figure to mutsig2_images.part000000000151/RYR3.50_15029_70000_0.023029_0.28479_0.036029.png
                gene_name: RYR3
               theta_stop: 0.096 
                    nperm: 70000 
                     p_ks: 0.023 
        ci_ks_bounds_left: 0.022 
       ci_ks_bounds_right: 0.024 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.036 
     ci_joint_bounds_left: 0.035 
    ci_joint_bounds_right: 0.037 

Current progress: 6 percent done.
RYR1
Processing conservation and coverage...
64% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.644396e-01	ci left: 1.865372e-02	ci right 2.442970e-02	k: 214	n:10000
Cons ci ratio: 6.614075e-01	ci left: 2.355713e-03	ci right 4.747948e-03	k: 34	n:10000
KS ci ratio: 6.231794e-02	ci left: 2.745815e-01	ci right 2.923448e-01	k: 2834	n:10000
RYR1   10000 perm   4 sec   (2582 perm/sec)   p_kst 2.834000e-01   p_cons 3.400000e-03   p_joint 2.140000e-02

Joint ci ratio: 2.569803e-01	ci left: 1.002189e-02	ci right 1.302265e-02	k: 229	n:20000
Cons ci ratio: 5.139616e-01	ci left: 2.159255e-03	ci right 3.690949e-03	k: 57	n:20000
KS ci ratio: 4.295861e-02	ci left: 2.875919e-01	ci right 3.002681e-01	k: 5878	n:20000
RYR1   20000 perm   8 sec   (2432 perm/sec)   p_kst 2.939000e-01   p_cons 2.850000e-03   p_joint 1.145000e-02

Joint ci ratio: 1.759980e-01	ci left: 1.483366e-02	ci right 1.772779e-02	k: 487	n:30000
Cons ci ratio: 4.172532e-01	ci left: 2.323413e-03	ci right 3.575928e-03	k: 87	n:30000
KS ci ratio: 3.615151e-02	ci left: 2.764487e-01	ci right 2.866603e-01	k: 8446	n:30000
RYR1   30000 perm   13 sec   (2289 perm/sec)   p_kst 2.815333e-01   p_cons 2.900000e-03   p_joint 1.623333e-02

Joint ci ratio: 1.864896e-01	ci left: 9.905587e-03	ci right 1.196634e-02	k: 436	n:40000
Cons ci ratio: 3.486666e-01	ci left: 2.601872e-03	ci right 3.722182e-03	k: 125	n:40000
KS ci ratio: 3.139091e-02	ci left: 2.760762e-01	ci right 2.849057e-01	k: 11219	n:40000
RYR1   40000 perm   18 sec   (2268 perm/sec)   p_kst 2.804750e-01   p_cons 3.125000e-03   p_joint 1.090000e-02

Joint ci ratio: 1.401737e-01	ci left: 1.431957e-02	ci right 1.649722e-02	k: 769	n:50000
Cons ci ratio: 3.133581e-01	ci left: 2.631774e-03	ci right 3.627299e-03	k: 155	n:50000
KS ci ratio: 2.792740e-02	ci left: 2.786959e-01	ci right 2.866094e-01	k: 14132	n:50000
RYR1   50000 perm   22 sec   (2245 perm/sec)   p_kst 2.826400e-01   p_cons 3.100000e-03   p_joint 1.538000e-02

Joint ci ratio: 1.454140e-01	ci left: 1.109588e-02	ci right 1.285180e-02	k: 717	n:60000
Cons ci ratio: 2.925548e-01	ci left: 2.547355e-03	ci right 3.435134e-03	k: 178	n:60000
KS ci ratio: 2.544663e-02	ci left: 2.797963e-01	ci right 2.870246e-01	k: 17004	n:60000
RYR1   60000 perm   27 sec   (2225 perm/sec)   p_kst 2.834000e-01   p_cons 2.966667e-03   p_joint 1.195000e-02

Joint ci ratio: 1.441268e-01	ci left: 9.703001e-03	ci right 1.122370e-02	k: 731	n:70000
Cons ci ratio: 2.650803e-01	ci left: 2.701754e-03	ci right 3.540272e-03	k: 217	n:70000
KS ci ratio: 2.353928e-02	ci left: 2.804051e-01	ci right 2.870985e-01	k: 19862	n:70000
RYR1   70000 perm   32 sec   (2210 perm/sec)   p_kst 2.837429e-01   p_cons 3.100000e-03   p_joint 1.044286e-02

Joint ci ratio: 1.410478e-01	ci left: 8.887643e-03	ci right 1.024828e-02	k: 764	n:80000
Cons ci ratio: 2.460568e-01	ci left: 2.773559e-03	ci right 3.563152e-03	k: 252	n:80000
KS ci ratio: 2.202072e-02	ci left: 2.805903e-01	ci right 2.868504e-01	k: 22697	n:80000
RYR1   80000 perm   37 sec   (2148 perm/sec)   p_kst 2.837125e-01   p_cons 3.150000e-03   p_joint 9.550000e-03

Joint ci ratio: 1.200920e-01	ci left: 1.099691e-02	ci right 1.241261e-02	k: 1052	n:90000
Cons ci ratio: 2.163811e-01	ci left: 3.240251e-03	ci right 4.036714e-03	k: 326	n:90000
KS ci ratio: 2.077454e-02	ci left: 2.805127e-01	ci right 2.864124e-01	k: 25511	n:90000
RYR1   90000 perm   42 sec   (2133 perm/sec)   p_kst 2.834556e-01   p_cons 3.622222e-03   p_joint 1.168889e-02

Joint ci ratio: 1.220514e-01	ci left: 9.586476e-03	ci right 1.084218e-02	k: 1020	n:100000
Cons ci ratio: 2.215787e-01	ci left: 2.774376e-03	ci right 3.474935e-03	k: 311	n:100000
KS ci ratio: 1.972433e-02	ci left: 2.803390e-01	ci right 2.859336e-01	k: 28313	n:100000
RYR1   100000 perm   48 sec   (2084 perm/sec)   p_kst 2.831300e-01   p_cons 3.110000e-03   p_joint 1.020000e-02

Joint ci ratio: 1.045138e-01	ci left: 1.196689e-02	ci right 1.329535e-02	k: 1388	n:110000
Cons ci ratio: 2.086012e-01	ci left: 2.866237e-03	ci right 3.542194e-03	k: 351	n:110000
KS ci ratio: 1.879605e-02	ci left: 2.806928e-01	ci right 2.860278e-01	k: 31169	n:110000
RYR1   110000 perm   53 sec   (2072 perm/sec)   p_kst 2.833545e-01   p_cons 3.190909e-03   p_joint 1.261818e-02

Joint ci ratio: 1.238812e-01	ci left: 7.762116e-03	ci right 8.795192e-03	k: 992	n:120000
Cons ci ratio: 1.822208e-01	ci left: 3.491571e-03	ci right 4.199406e-03	k: 460	n:120000
KS ci ratio: 1.796807e-02	ci left: 2.814331e-01	ci right 2.865440e-01	k: 34078	n:120000
RYR1   120000 perm   59 sec   (2035 perm/sec)   p_kst 2.839833e-01   p_cons 3.833333e-03   p_joint 8.266667e-03

Joint ci ratio: 1.221364e-01	ci left: 7.381153e-03	ci right 8.348685e-03	k: 1021	n:130000
Cons ci ratio: 1.749696e-01	ci left: 3.509584e-03	ci right 4.189765e-03	k: 499	n:130000
KS ci ratio: 1.726411e-02	ci left: 2.815114e-01	ci right 2.864214e-01	k: 36915	n:130000
RYR1   130000 perm   64 sec   (2026 perm/sec)   p_kst 2.839615e-01   p_cons 3.838462e-03   p_joint 7.853846e-03

Joint ci ratio: 1.237669e-01	ci left: 6.673774e-03	ci right 7.561110e-03	k: 995	n:140000
Cons ci ratio: 1.689932e-01	ci left: 3.504975e-03	ci right 4.158697e-03	k: 535	n:140000
KS ci ratio: 1.664509e-02	ci left: 2.813823e-01	ci right 2.861124e-01	k: 39724	n:140000
RYR1   140000 perm   70 sec   (2006 perm/sec)   p_kst 2.837429e-01   p_cons 3.821429e-03   p_joint 7.107143e-03

Joint ci ratio: 1.090985e-01	ci left: 8.067553e-03	ci right 9.004926e-03	k: 1279	n:150000
Cons ci ratio: 1.633037e-01	ci left: 3.514112e-03	ci right 4.145305e-03	k: 573	n:150000
KS ci ratio: 1.607106e-02	ci left: 2.817055e-01	ci right 2.862761e-01	k: 42598	n:150000
RYR1   150000 perm   76 sec   (1986 perm/sec)   p_kst 2.839867e-01   p_cons 3.820000e-03   p_joint 8.526667e-03

Joint ci ratio: 1.062375e-01	ci left: 7.989032e-03	ci right 8.891416e-03	k: 1349	n:160000
Cons ci ratio: 1.580232e-01	ci left: 3.528433e-03	ci right 4.139762e-03	k: 612	n:160000
KS ci ratio: 1.555236e-02	ci left: 2.819970e-01	ci right 2.864233e-01	k: 45473	n:160000
RYR1   160000 perm   81 sec   (1977 perm/sec)   p_kst 2.842062e-01   p_cons 3.825000e-03   p_joint 8.431250e-03

Joint ci ratio: 9.837887e-02	ci left: 8.797505e-03	ci right 9.713466e-03	k: 1572	n:170000
Cons ci ratio: 1.527543e-01	ci left: 3.563991e-03	ci right 4.159008e-03	k: 655	n:170000
KS ci ratio: 1.508890e-02	ci left: 2.820391e-01	ci right 2.863330e-01	k: 48311	n:170000
RYR1   170000 perm   87 sec   (1945 perm/sec)   p_kst 2.841824e-01   p_cons 3.852941e-03   p_joint 9.247059e-03

Joint ci ratio: 8.815113e-02	ci left: 1.038740e-02	ci right 1.135068e-02	k: 1955	n:180000
Cons ci ratio: 1.463078e-01	ci left: 3.681526e-03	ci right 4.267961e-03	k: 714	n:180000
KS ci ratio: 1.464835e-02	ci left: 2.825273e-01	ci right 2.867019e-01	k: 51230	n:180000
RYR1   180000 perm   93 sec   (1935 perm/sec)   p_kst 2.846111e-01   p_cons 3.966667e-03   p_joint 1.086111e-02

Joint ci ratio: 8.596152e-02	ci left: 1.036069e-02	ci right 1.129643e-02	k: 2056	n:190000
Cons ci ratio: 1.423793e-01	ci left: 3.690686e-03	ci right 4.261454e-03	k: 754	n:190000
KS ci ratio: 1.427429e-02	ci left: 2.821096e-01	ci right 2.861707e-01	k: 53986	n:190000
RYR1   190000 perm   99 sec   (1925 perm/sec)   p_kst 2.841368e-01   p_cons 3.968421e-03   p_joint 1.082105e-02

Joint ci ratio: 8.682050e-02	ci left: 9.651717e-03	ci right 1.053257e-02	k: 2017	n:200000
Cons ci ratio: 1.387511e-01	ci left: 3.699120e-03	ci right 4.255409e-03	k: 794	n:200000
KS ci ratio: 1.390371e-02	ci left: 2.824285e-01	ci right 2.863877e-01	k: 56881	n:200000
RYR1   200000 perm   105 sec   (1911 perm/sec)   p_kst 2.844050e-01   p_cons 3.970000e-03   p_joint 1.008500e-02

Joint ci ratio: 8.552476e-02	ci left: 9.480951e-03	ci right 1.033266e-02	k: 2079	n:210000
Cons ci ratio: 1.353056e-01	ci left: 3.711518e-03	ci right 4.254695e-03	k: 835	n:210000
KS ci ratio: 1.356960e-02	ci left: 2.824474e-01	ci right 2.863110e-01	k: 59719	n:210000
RYR1   210000 perm   110 sec   (1904 perm/sec)   p_kst 2.843762e-01   p_cons 3.976190e-03   p_joint 9.900000e-03

Joint ci ratio: 8.602567e-02	ci left: 8.947590e-03	ci right 9.756326e-03	k: 2056	n:220000
Cons ci ratio: 1.323320e-01	ci left: 3.709757e-03	ci right 4.239807e-03	k: 873	n:220000
KS ci ratio: 1.324117e-02	ci left: 2.829963e-01	ci right 2.867730e-01	k: 62674	n:220000
RYR1   220000 perm   116 sec   (1897 perm/sec)   p_kst 2.848818e-01   p_cons 3.968182e-03   p_joint 9.345455e-03

Joint ci ratio: 7.711946e-02	ci left: 1.068008e-02	ci right 1.154100e-02	k: 2554	n:230000
Cons ci ratio: 1.300483e-01	ci left: 3.678819e-03	ci right 4.194676e-03	k: 904	n:230000
KS ci ratio: 1.295535e-02	ci left: 2.828736e-01	ci right 2.865666e-01	k: 65485	n:230000
RYR1   230000 perm   122 sec   (1890 perm/sec)   p_kst 2.847174e-01   p_cons 3.930435e-03   p_joint 1.110435e-02

Joint ci ratio: 7.562615e-02	ci left: 1.065196e-02	ci right 1.149325e-02	k: 2656	n:240000
Cons ci ratio: 1.274015e-01	ci left: 3.678769e-03	ci right 4.183327e-03	k: 942	n:240000
KS ci ratio: 1.268040e-02	ci left: 2.829824e-01	ci right 2.865978e-01	k: 68349	n:240000
RYR1   240000 perm   128 sec   (1882 perm/sec)   p_kst 2.847875e-01   p_cons 3.925000e-03   p_joint 1.106667e-02

Joint ci ratio: 7.264831e-02	ci left: 1.109359e-02	ci right 1.193380e-02	k: 2877	n:250000
Cons ci ratio: 1.245916e-01	ci left: 3.698200e-03	ci right 4.193410e-03	k: 985	n:250000
KS ci ratio: 1.242590e-02	ci left: 2.829635e-01	ci right 2.865055e-01	k: 71183	n:250000
RYR1   250000 perm   134 sec   (1873 perm/sec)   p_kst 2.847320e-01   p_cons 3.940000e-03   p_joint 1.150800e-02

Joint ci ratio: 7.247385e-02	ci left: 1.072348e-02	ci right 1.153363e-02	k: 2892	n:260000
Cons ci ratio: 1.226800e-01	ci left: 3.671501e-03	ci right 4.155045e-03	k: 1016	n:260000
KS ci ratio: 1.217843e-02	ci left: 2.832039e-01	ci right 2.866778e-01	k: 74084	n:260000
RYR1   260000 perm   140 sec   (1855 perm/sec)   p_kst 2.849385e-01   p_cons 3.907692e-03   p_joint 1.112308e-02

Joint ci ratio: 7.155716e-02	ci left: 1.059907e-02	ci right 1.138926e-02	k: 2967	n:270000
Cons ci ratio: 1.198815e-01	ci left: 3.707908e-03	ci right 4.184318e-03	k: 1064	n:270000
KS ci ratio: 1.195332e-02	ci left: 2.831499e-01	ci right 2.865585e-01	k: 76910	n:270000
RYR1   270000 perm   146 sec   (1845 perm/sec)   p_kst 2.848519e-01   p_cons 3.940741e-03   p_joint 1.098889e-02

Joint ci ratio: 7.301473e-02	ci left: 9.817092e-03	ci right 1.056453e-02	k: 2852	n:280000
Cons ci ratio: 1.179598e-01	ci left: 3.696764e-03	ci right 4.163597e-03	k: 1099	n:280000
KS ci ratio: 1.174354e-02	ci left: 2.829862e-01	ci right 2.863326e-01	k: 79704	n:280000
RYR1   280000 perm   153 sec   (1834 perm/sec)   p_kst 2.846571e-01   p_cons 3.925000e-03   p_joint 1.018571e-02

Joint ci ratio: 7.050061e-02	ci left: 1.017624e-02	ci right 1.092325e-02	k: 3058	n:290000
Cons ci ratio: 1.159228e-01	ci left: 3.699838e-03	ci right 4.158439e-03	k: 1138	n:290000
KS ci ratio: 1.154101e-02	ci left: 2.829547e-01	ci right 2.862427e-01	k: 82533	n:290000
RYR1   290000 perm   159 sec   (1824 perm/sec)   p_kst 2.845966e-01   p_cons 3.924138e-03   p_joint 1.054483e-02

Joint ci ratio: 7.044338e-02	ci left: 9.856620e-03	ci right 1.057956e-02	k: 3064	n:300000
Cons ci ratio: 1.141338e-01	ci left: 3.693057e-03	ci right 4.143276e-03	k: 1174	n:300000
KS ci ratio: 1.134220e-02	ci left: 2.831555e-01	ci right 2.863887e-01	k: 85431	n:300000
RYR1   300000 perm   165 sec   (1814 perm/sec)   p_kst 2.847700e-01   p_cons 3.913333e-03   p_joint 1.021333e-02

Joint ci ratio: 7.081771e-02	ci left: 9.440359e-03	ci right 1.013659e-02	k: 3033	n:310000
Cons ci ratio: 1.122392e-01	ci left: 3.699306e-03	ci right 4.142305e-03	k: 1214	n:310000
KS ci ratio: 1.115969e-02	ci left: 2.831118e-01	ci right 2.862922e-01	k: 88257	n:310000
RYR1   310000 perm   172 sec   (1803 perm/sec)   p_kst 2.847000e-01   p_cons 3.916129e-03   p_joint 9.783871e-03

Joint ci ratio: 7.405015e-02	ci left: 8.359657e-03	ci right 9.005538e-03	k: 2777	n:320000
Cons ci ratio: 1.108356e-01	ci left: 3.677873e-03	ci right 4.112438e-03	k: 1245	n:320000
KS ci ratio: 1.083022e-02	ci left: 2.889024e-01	ci right 2.920514e-01	k: 92952	n:320000
RYR1   320000 perm   178 sec   (1794 perm/sec)   p_kst 2.904750e-01   p_cons 3.890625e-03   p_joint 8.678125e-03

Joint ci ratio: 7.644072e-02	ci left: 7.603733e-03	ci right 8.211017e-03	k: 2608	n:330000
Cons ci ratio: 1.087590e-01	ci left: 3.707885e-03	ci right 4.137262e-03	k: 1293	n:330000
KS ci ratio: 1.066602e-02	ci left: 2.888818e-01	ci right 2.919825e-01	k: 95842	n:330000
RYR1   330000 perm   185 sec   (1784 perm/sec)   p_kst 2.904303e-01   p_cons 3.918182e-03   p_joint 7.903030e-03

Joint ci ratio: 7.618529e-02	ci left: 7.431999e-03	ci right 8.023496e-03	k: 2626	n:340000
Cons ci ratio: 1.076846e-01	ci left: 3.673227e-03	ci right 4.094122e-03	k: 1319	n:340000
KS ci ratio: 1.051965e-02	ci left: 2.884487e-01	ci right 2.915020e-01	k: 98591	n:340000
RYR1   340000 perm   192 sec   (1775 perm/sec)   p_kst 2.899735e-01   p_cons 3.879412e-03   p_joint 7.723529e-03

Joint ci ratio: 6.939590e-02	ci left: 8.720653e-03	ci right 9.350373e-03	k: 3161	n:350000
Cons ci ratio: 1.060108e-01	ci left: 3.685072e-03	ci right 4.100352e-03	k: 1361	n:350000
KS ci ratio: 1.036589e-02	ci left: 2.885655e-01	ci right 2.915751e-01	k: 101524	n:350000
RYR1   350000 perm   198 sec   (1766 perm/sec)   p_kst 2.900686e-01   p_cons 3.888571e-03   p_joint 9.031429e-03

Joint ci ratio: 6.850337e-02	ci left: 8.704991e-03	ci right 9.325173e-03	k: 3244	n:360000
Cons ci ratio: 1.043009e-01	ci left: 3.704423e-03	ci right 4.114737e-03	k: 1406	n:360000
KS ci ratio: 1.022123e-02	ci left: 2.885735e-01	ci right 2.915410e-01	k: 104420	n:360000
RYR1   360000 perm   205 sec   (1756 perm/sec)   p_kst 2.900556e-01   p_cons 3.905556e-03   p_joint 9.011111e-03

Joint ci ratio: 6.832088e-02	ci left: 8.517509e-03	ci right 9.122653e-03	k: 3262	n:370000
Cons ci ratio: 1.025648e-01	ci left: 3.730680e-03	ci right 4.136610e-03	k: 1454	n:370000
KS ci ratio: 1.008498e-02	ci left: 2.884788e-01	ci right 2.914055e-01	k: 107278	n:370000
RYR1   370000 perm   212 sec   (1745 perm/sec)   p_kst 2.899405e-01   p_cons 3.929730e-03   p_joint 8.816216e-03

Joint ci ratio: 6.822351e-02	ci left: 8.319202e-03	ci right 8.909381e-03	k: 3272	n:380000
Cons ci ratio: 1.009463e-01	ci left: 3.753042e-03	ci right 4.154580e-03	k: 1501	n:380000
KS ci ratio: 9.955309e-03	ci left: 2.883368e-01	ci right 2.912243e-01	k: 110116	n:380000
RYR1   380000 perm   221 sec   (1718 perm/sec)   p_kst 2.897789e-01   p_cons 3.950000e-03   p_joint 8.610526e-03

Joint ci ratio: 6.826267e-02	ci left: 8.098297e-03	ci right 8.673146e-03	k: 3269	n:390000
Cons ci ratio: 9.943434e-02	ci left: 3.771806e-03	ci right 4.168953e-03	k: 1547	n:390000
KS ci ratio: 9.827204e-03	ci left: 2.883406e-01	ci right 2.911907e-01	k: 113008	n:390000
RYR1   390000 perm   228 sec   (1708 perm/sec)   p_kst 2.897641e-01   p_cons 3.966667e-03   p_joint 8.382051e-03

Outputting figure to mutsig2_images.part000000000151/RYR1.27_15541_390000_0.28976_0.0039667_0.0083821.png
                gene_name: RYR1
               theta_stop: 0.099 
                    nperm: 390000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.0040 
      ci_cons_bounds_left: 0.0038 
     ci_cons_bounds_right: 0.0042 
                  p_joint: 0.0084 
     ci_joint_bounds_left: 0.0081 
    ci_joint_bounds_right: 0.0087 

Current progress: 8 percent done.
SACS
Processing conservation and coverage...
72% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.886299e-02	ci left: 8.042017e-01	ci right 8.196161e-01	k: 8120	n:10000
KS ci ratio: 1.743974e-02	ci left: 8.273742e-01	ci right 8.420303e-01	k: 8348	n:10000
SACS   10000 perm   3 sec   (2937 perm/sec)   p_kst 8.348000e-01   p_cons 8.120000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000151/SACS.15_13776_10000_0.8348_0.812_1.png
                gene_name: SACS
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 11 percent done.
RTN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.986464e-02	ci left: 6.231641e-01	ci right 6.421586e-01	k: 6327	n:10000
Cons ci ratio: 5.424083e-02	ci left: 3.336927e-01	ci right 3.523989e-01	k: 3430	n:10000
KS ci ratio: 4.152849e-02	ci left: 4.612762e-01	ci right 4.809407e-01	k: 4711	n:10000
RTN1   10000 perm   2 sec   (5110 perm/sec)   p_kst 4.711000e-01   p_cons 3.430000e-01   p_joint 6.327000e-01

Outputting figure to mutsig2_images.part000000000151/RTN1.13_2432_10000_0.4711_0.343_0.6327.png
                gene_name: RTN1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 14 percent done.
RUNX1T1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.032022e-02	ci left: 1.512941e-01	ci right 1.657054e-01	k: 1584	n:10000
Cons ci ratio: 1.350161e-02	ci left: 8.878013e-01	ci right 8.999681e-01	k: 8940	n:10000
KS ci ratio: 1.127694e-01	ci left: 1.016890e-01	ci right 1.139406e-01	k: 1077	n:10000
RUNX1T1   10000 perm   2 sec   (5544 perm/sec)   p_kst 1.077000e-01   p_cons 8.940000e-01   p_joint 1.584000e-01

Joint ci ratio: 6.144226e-02	ci left: 1.638791e-01	ci right 1.743173e-01	k: 3381	n:20000
Cons ci ratio: 9.490341e-03	ci left: 8.907707e-01	ci right 8.993141e-01	k: 17902	n:20000
KS ci ratio: 7.822483e-02	ci left: 1.071696e-01	ci right 1.159437e-01	k: 2230	n:20000
RUNX1T1   20000 perm   4 sec   (4927 perm/sec)   p_kst 1.115000e-01   p_cons 8.951000e-01   p_joint 1.690500e-01

Outputting figure to mutsig2_images.part000000000151/RUNX1T1.12_1870_20000_0.1115_0.8951_0.16905.png
                gene_name: RUNX1T1
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 17 percent done.
RTTN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.958005e-02	ci left: 4.852533e-01	ci right 5.049496e-01	k: 4951	n:10000
Cons ci ratio: 2.879412e-02	ci left: 6.400560e-01	ci right 6.588569e-01	k: 6495	n:10000
KS ci ratio: 5.605823e-02	ci left: 3.190972e-01	ci right 3.376029e-01	k: 3283	n:10000
RTTN   10000 perm   3 sec   (3995 perm/sec)   p_kst 3.283000e-01   p_cons 6.495000e-01   p_joint 4.951000e-01

Outputting figure to mutsig2_images.part000000000151/RTTN.11_6877_10000_0.3283_0.6495_0.4951.png
                gene_name: RTTN
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.50 

Current progress: 19 percent done.
RXFP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.572823e-02	ci left: 6.898019e-01	ci right 7.078821e-01	k: 6989	n:10000
Cons ci ratio: 5.651887e-02	ci left: 3.155244e-01	ci right 3.339778e-01	k: 3247	n:10000
KS ci ratio: 8.933874e-03	ci left: 9.462737e-01	ci right 9.548614e-01	k: 9507	n:10000
RXFP3   10000 perm   2 sec   (5619 perm/sec)   p_kst 9.507000e-01   p_cons 3.247000e-01   p_joint 6.989000e-01

Outputting figure to mutsig2_images.part000000000151/RXFP3.9_1414_10000_0.9507_0.3247_0.6989.png
                gene_name: RXFP3
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 22 percent done.
RSRC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.632864e-02	ci left: 6.799240e-01	ci right 6.981658e-01	k: 6891	n:10000
Cons ci ratio: 3.257287e-02	ci left: 5.817902e-01	ci right 6.011565e-01	k: 5915	n:10000
KS ci ratio: 3.536014e-02	ci left: 5.414881e-01	ci right 5.610820e-01	k: 5513	n:10000
RSRC1   10000 perm   2 sec   (5496 perm/sec)   p_kst 5.513000e-01   p_cons 5.915000e-01   p_joint 6.891000e-01

Outputting figure to mutsig2_images.part000000000151/RSRC1.8_1041_10000_0.5513_0.5915_0.6891.png
                gene_name: RSRC1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 25 percent done.
RXFP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.901428e-02	ci left: 4.924508e-01	ci right 5.121478e-01	k: 5023	n:10000
KS ci ratio: 1.885682e-02	ci left: 8.043033e-01	ci right 8.197145e-01	k: 8121	n:10000
RXFP1   10000 perm   2 sec   (5186 perm/sec)   p_kst 8.121000e-01   p_cons 5.023000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000151/RXFP1.8_2346_10000_0.8121_0.5023_1.png
                gene_name: RXFP1
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 28 percent done.
RXRG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.012596e-02	ci left: 7.833022e-01	ci right 7.993277e-01	k: 7914	n:10000
Cons ci ratio: 1.908499e-02	ci left: 8.005470e-01	ci right 8.160730e-01	k: 8084	n:10000
KS ci ratio: 2.879412e-02	ci left: 6.400560e-01	ci right 6.588569e-01	k: 6495	n:10000
RXRG   10000 perm   2 sec   (5379 perm/sec)   p_kst 6.495000e-01   p_cons 8.084000e-01   p_joint 7.914000e-01

Outputting figure to mutsig2_images.part000000000151/RXRG.7_1489_10000_0.6495_0.8084_0.7914.png
                gene_name: RXRG
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 31 percent done.
RTP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.624939e-02	ci left: 3.176084e-01	ci right 3.360925e-01	k: 3268	n:10000
Cons ci ratio: 4.629413e-02	ci left: 4.078097e-01	ci right 4.272384e-01	k: 4175	n:10000
KS ci ratio: 7.023701e-02	ci left: 2.290880e-01	ci right 2.458652e-01	k: 2374	n:10000
RTP2   10000 perm   2 sec   (6138 perm/sec)   p_kst 2.374000e-01   p_cons 4.175000e-01   p_joint 3.268000e-01

Outputting figure to mutsig2_images.part000000000151/RTP2.4_686_10000_0.2374_0.4175_0.3268.png
                gene_name: RTP2
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 33 percent done.
RUVBL1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.424714e-03	ci left: 9.784504e-01	ci right 9.838641e-01	k: 9813	n:10000
Cons ci ratio: 3.229731e-02	ci left: 5.859043e-01	ci right 6.052400e-01	k: 5956	n:10000
KS ci ratio: 3.877317e-02	ci left: 4.955504e-01	ci right 5.152465e-01	k: 5054	n:10000
RUVBL1   10000 perm   2 sec   (6175 perm/sec)   p_kst 5.054000e-01   p_cons 5.956000e-01   p_joint 9.813000e-01

Outputting figure to mutsig2_images.part000000000151/RUVBL1.3_1415_10000_0.5054_0.5956_0.9813.png
                gene_name: RUVBL1
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 36 percent done.
RUNDC3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.055584e-02	ci left: 6.124120e-01	ci right 6.315169e-01	k: 6220	n:10000
Cons ci ratio: 5.329191e-02	ci left: 3.416399e-01	ci right 3.604469e-01	k: 3510	n:10000
KS ci ratio: 1.912809e-02	ci left: 7.998365e-01	ci right 8.153839e-01	k: 8077	n:10000
RUNDC3B   10000 perm   2 sec   (6047 perm/sec)   p_kst 8.077000e-01   p_cons 3.510000e-01   p_joint 6.220000e-01

Outputting figure to mutsig2_images.part000000000151/RUNDC3B.3_1470_10000_0.8077_0.351_0.622.png
                gene_name: RUNDC3B
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 39 percent done.
RUNX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.563685e-02	ci left: 2.541932e-01	ci right 2.715451e-01	k: 2628	n:10000
Cons ci ratio: 7.210993e-02	ci left: 2.198072e-01	ci right 2.363514e-01	k: 2280	n:10000
KS ci ratio: 8.241153e-02	ci left: 1.768418e-01	ci right 1.921425e-01	k: 1844	n:10000
RUNX2   10000 perm   2 sec   (5991 perm/sec)   p_kst 1.844000e-01   p_cons 2.280000e-01   p_joint 2.628000e-01

Outputting figure to mutsig2_images.part000000000151/RUNX2.3_1614_10000_0.1844_0.228_0.2628.png
                gene_name: RUNX2
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 42 percent done.
S1PR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.138375e-01	ci left: 9.993440e-02	ci right 1.120962e-01	k: 1059	n:10000
Cons ci ratio: 1.544678e-01	ci left: 5.580941e-02	ci right 6.524862e-02	k: 604	n:10000
KS ci ratio: 9.695188e-02	ci left: 1.336465e-01	ci right 1.473637e-01	k: 1404	n:10000
S1PR1   10000 perm   2 sec   (6237 perm/sec)   p_kst 1.404000e-01   p_cons 6.040000e-02   p_joint 1.059000e-01

Joint ci ratio: 1.427146e-01	ci left: 3.375046e-02	ci right 3.898544e-02	k: 726	n:20000
Cons ci ratio: 1.080444e-01	ci left: 5.840428e-02	ci right 6.512383e-02	k: 1234	n:20000
KS ci ratio: 6.959732e-02	ci left: 1.321148e-01	ci right 1.416910e-01	k: 2737	n:20000
S1PR1   20000 perm   4 sec   (5670 perm/sec)   p_kst 1.368500e-01   p_cons 6.170000e-02   p_joint 3.630000e-02

Joint ci ratio: 1.107765e-01	ci left: 3.784298e-02	ci right 4.231332e-02	k: 1201	n:30000
Cons ci ratio: 8.820587e-02	ci left: 5.903581e-02	ci right 6.451610e-02	k: 1852	n:30000
KS ci ratio: 5.701139e-02	ci left: 1.322386e-01	ci right 1.400321e-01	k: 4083	n:30000
S1PR1   30000 perm   6 sec   (5436 perm/sec)   p_kst 1.361000e-01   p_cons 6.173333e-02   p_joint 4.003333e-02

Joint ci ratio: 1.012049e-01	ci left: 3.431758e-02	ci right 3.800015e-02	k: 1445	n:40000
Cons ci ratio: 7.673143e-02	ci left: 5.889498e-02	ci right 6.361896e-02	k: 2449	n:40000
KS ci ratio: 4.913521e-02	ci left: 1.338917e-01	ci right 1.406611e-01	k: 5490	n:40000
S1PR1   40000 perm   8 sec   (5280 perm/sec)   p_kst 1.372500e-01   p_cons 6.122500e-02   p_joint 3.612500e-02

Joint ci ratio: 7.943741e-02	ci left: 4.459224e-02	ci right 4.830065e-02	k: 2321	n:50000
Cons ci ratio: 6.874448e-02	ci left: 5.895710e-02	ci right 6.317404e-02	k: 3052	n:50000
KS ci ratio: 4.398416e-02	ci left: 1.340567e-01	ci right 1.401055e-01	k: 6853	n:50000
S1PR1   50000 perm   10 sec   (5151 perm/sec)   p_kst 1.370600e-01   p_cons 6.104000e-02   p_joint 4.642000e-02

Outputting figure to mutsig2_images.part000000000151/S1PR1.3_1153_50000_0.13706_0.06104_0.04642.png
                gene_name: S1PR1
               theta_stop: 0.079 
                    nperm: 50000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.061 
      ci_cons_bounds_left: 0.059 
     ci_cons_bounds_right: 0.063 
                  p_joint: 0.046 
     ci_joint_bounds_left: 0.045 
    ci_joint_bounds_right: 0.048 

Current progress: 44 percent done.
RSU1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.223032e-02	ci left: 5.869078e-01	ci right 6.062359e-01	k: 5966	n:10000
Cons ci ratio: 2.590558e-02	ci left: 6.868784e-01	ci right 7.050074e-01	k: 6960	n:10000
KS ci ratio: 9.427484e-02	ci left: 1.404072e-01	ci right 1.543988e-01	k: 1473	n:10000
RSU1   10000 perm   1 sec   (6790 perm/sec)   p_kst 1.473000e-01   p_cons 6.960000e-01   p_joint 5.966000e-01

Outputting figure to mutsig2_images.part000000000151/RSU1.2_866_10000_0.1473_0.696_0.5966.png
                gene_name: RSU1
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 47 percent done.
RTEL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.372486e-02	ci left: 5.648393e-01	ci right 5.843172e-01	k: 5746	n:10000
Cons ci ratio: 5.881241e-02	ci left: 2.984627e-01	ci right 3.166495e-01	k: 3075	n:10000
KS ci ratio: 3.903769e-02	ci left: 4.921509e-01	ci right 5.118480e-01	k: 5020	n:10000
RTEL1   10000 perm   2 sec   (5506 perm/sec)   p_kst 5.020000e-01   p_cons 3.075000e-01   p_joint 5.746000e-01

Outputting figure to mutsig2_images.part000000000151/RTEL1.2_4039_10000_0.502_0.3075_0.5746.png
                gene_name: RTEL1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 50 percent done.
RTKN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.787107e-02	ci left: 3.916729e-01	ci right 4.109846e-01	k: 4013	n:10000
Cons ci ratio: 5.740679e-02	ci left: 3.087773e-01	ci right 3.271288e-01	k: 3179	n:10000
KS ci ratio: 4.312913e-02	ci left: 4.425100e-01	ci right 4.621178e-01	k: 4523	n:10000
RTKN2   10000 perm   2 sec   (6437 perm/sec)   p_kst 4.523000e-01   p_cons 3.179000e-01   p_joint 4.013000e-01

Outputting figure to mutsig2_images.part000000000151/RTKN2.2_1878_10000_0.4523_0.3179_0.4013.png
                gene_name: RTKN2
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 53 percent done.
RTN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.123674e-02	ci left: 7.647622e-01	ci right 7.812784e-01	k: 7731	n:10000
Cons ci ratio: 1.897407e-02	ci left: 8.023742e-01	ci right 8.178447e-01	k: 8102	n:10000
KS ci ratio: 3.431475e-02	ci left: 5.563181e-01	ci right 5.758434e-01	k: 5661	n:10000
RTN3   10000 perm   2 sec   (5801 perm/sec)   p_kst 5.661000e-01   p_cons 8.102000e-01   p_joint 7.731000e-01

Outputting figure to mutsig2_images.part000000000151/RTN3.2_3209_10000_0.5661_0.8102_0.7731.png
                gene_name: RTN3
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 56 percent done.
RTN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.409374e-01	ci left: 6.671876e-02	ci right 7.693236e-02	k: 717	n:10000
Cons ci ratio: 2.339773e-01	ci left: 2.410011e-02	ci right 3.057918e-02	k: 272	n:10000
KS ci ratio: 4.607595e-02	ci left: 4.101016e-01	ci right 4.295451e-01	k: 4198	n:10000
RTN4   10000 perm   2 sec   (5590 perm/sec)   p_kst 4.198000e-01   p_cons 2.720000e-02   p_joint 7.170000e-02

Joint ci ratio: 1.268072e-01	ci left: 4.270154e-02	ci right 4.853149e-02	k: 911	n:20000
Cons ci ratio: 1.637627e-01	ci left: 2.556543e-02	ci right 3.017320e-02	k: 556	n:20000
KS ci ratio: 3.249014e-02	ci left: 4.143439e-01	ci right 4.280790e-01	k: 8424	n:20000
RTN4   20000 perm   4 sec   (4945 perm/sec)   p_kst 4.212000e-01   p_cons 2.780000e-02   p_joint 4.555000e-02

Joint ci ratio: 1.635002e-01	ci left: 1.726117e-02	ci right 2.036634e-02	k: 563	n:30000
Cons ci ratio: 1.342508e-01	ci left: 2.577538e-02	ci right 2.951685e-02	k: 828	n:30000
KS ci ratio: 2.657428e-02	ci left: 4.147722e-01	ci right 4.259765e-01	k: 12611	n:30000
RTN4   30000 perm   6 sec   (4731 perm/sec)   p_kst 4.203667e-01   p_cons 2.760000e-02   p_joint 1.876667e-02

Joint ci ratio: 8.759885e-02	ci left: 4.558280e-02	ci right 4.978318e-02	k: 1906	n:40000
Cons ci ratio: 1.155858e-01	ci left: 2.633224e-02	ci right 2.958677e-02	k: 1117	n:40000
KS ci ratio: 2.294444e-02	ci left: 4.170036e-01	ci right 4.267077e-01	k: 16874	n:40000
RTN4   40000 perm   9 sec   (4581 perm/sec)   p_kst 4.218500e-01   p_cons 2.792500e-02   p_joint 4.765000e-02

Joint ci ratio: 1.261696e-01	ci left: 1.774379e-02	ci right 2.015252e-02	k: 946	n:50000
Cons ci ratio: 1.034786e-01	ci left: 2.645445e-02	ci right 2.936071e-02	k: 1394	n:50000
KS ci ratio: 2.049248e-02	ci left: 4.182249e-01	ci right 4.269041e-01	k: 21128	n:50000
RTN4   50000 perm   11 sec   (4471 perm/sec)   p_kst 4.225600e-01   p_cons 2.788000e-02   p_joint 1.892000e-02

Joint ci ratio: 7.183482e-02	ci left: 4.558227e-02	ci right 4.899502e-02	k: 2836	n:60000
Cons ci ratio: 9.403022e-02	ci left: 2.682478e-02	ci right 2.948779e-02	k: 1688	n:60000
KS ci ratio: 1.866156e-02	ci left: 4.197915e-01	ci right 4.277159e-01	k: 25425	n:60000
RTN4   60000 perm   14 sec   (4371 perm/sec)   p_kst 4.237500e-01   p_cons 2.813333e-02   p_joint 4.726667e-02

Outputting figure to mutsig2_images.part000000000151/RTN4.2_3653_60000_0.42375_0.028133_0.047267.png
                gene_name: RTN4
               theta_stop: 0.094 
                    nperm: 60000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.028 
      ci_cons_bounds_left: 0.027 
     ci_cons_bounds_right: 0.029 
                  p_joint: 0.047 
     ci_joint_bounds_left: 0.046 
    ci_joint_bounds_right: 0.049 

Current progress: 58 percent done.
RTN4IP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.299980e-02	ci left: 7.352249e-01	ci right 7.524328e-01	k: 7439	n:10000
Cons ci ratio: 1.609321e-02	ci left: 8.487612e-01	ci right 8.626309e-01	k: 8558	n:10000
KS ci ratio: 4.741593e-02	ci left: 3.962539e-01	ci right 4.156010e-01	k: 4059	n:10000
RTN4IP1   10000 perm   1 sec   (6670 perm/sec)   p_kst 4.059000e-01   p_cons 8.558000e-01   p_joint 7.439000e-01

Outputting figure to mutsig2_images.part000000000151/RTN4IP1.2_1227_10000_0.4059_0.8558_0.7439.png
                gene_name: RTN4IP1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.75 

Current progress: 61 percent done.
RTP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.013009e-02	ci left: 4.783575e-01	ci right 4.980493e-01	k: 4882	n:10000
Cons ci ratio: 7.441696e-02	ci left: 2.090529e-01	ci right 2.253122e-01	k: 2171	n:10000
KS ci ratio: 1.323674e-02	ci left: 8.915942e-01	ci right 9.035731e-01	k: 8977	n:10000
RTP1   10000 perm   1 sec   (6988 perm/sec)   p_kst 8.977000e-01   p_cons 2.171000e-01   p_joint 4.882000e-01

Outputting figure to mutsig2_images.part000000000151/RTP1.2_800_10000_0.8977_0.2171_0.4882.png
                gene_name: RTP1
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 64 percent done.
RTP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.139383e-02	ci left: 3.582391e-01	ci right 3.772380e-01	k: 3677	n:10000
Cons ci ratio: 2.461427e-02	ci left: 7.082607e-01	ci right 7.260126e-01	k: 7172	n:10000
KS ci ratio: 8.184094e-02	ci left: 1.789079e-01	ci right 1.942751e-01	k: 1865	n:10000
RTP3   10000 perm   1 sec   (7029 perm/sec)   p_kst 1.865000e-01   p_cons 7.172000e-01   p_joint 3.677000e-01

Outputting figure to mutsig2_images.part000000000151/RTP3.2_707_10000_0.1865_0.7172_0.3677.png
                gene_name: RTP3
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 67 percent done.
RTP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.820875e-03	ci left: 9.578562e-01	ci right 9.654718e-01	k: 9618	n:10000
Cons ci ratio: 5.453085e-02	ci left: 3.313090e-01	ci right 3.499839e-01	k: 3406	n:10000
KS ci ratio: 7.810253e-03	ci left: 9.579609e-01	ci right 9.655670e-01	k: 9619	n:10000
RTP4   10000 perm   1 sec   (6993 perm/sec)   p_kst 9.619000e-01   p_cons 3.406000e-01   p_joint 9.618000e-01

Outputting figure to mutsig2_images.part000000000151/RTP4.2_749_10000_0.9619_0.3406_0.9618.png
                gene_name: RTP4
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 69 percent done.
RUFY1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.550381e-02	ci left: 4.161812e-01	ci right 4.356620e-01	k: 4259	n:10000
Cons ci ratio: 1.920806e-02	ci left: 7.985170e-01	ci right 8.141041e-01	k: 8064	n:10000
KS ci ratio: 8.056948e-02	ci left: 1.836317e-01	ci right 1.991485e-01	k: 1913	n:10000
RUFY1   10000 perm   2 sec   (6402 perm/sec)   p_kst 1.913000e-01   p_cons 8.064000e-01   p_joint 4.259000e-01

Outputting figure to mutsig2_images.part000000000151/RUFY1.2_2199_10000_0.1913_0.8064_0.4259.png
                gene_name: RUFY1
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 72 percent done.
RUFY2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.396016e-02	ci left: 7.191628e-01	ci right 7.367042e-01	k: 7280	n:10000
Cons ci ratio: 4.046070e-02	ci left: 4.742610e-01	ci right 4.939483e-01	k: 4841	n:10000
KS ci ratio: 3.136044e-02	ci left: 6.000581e-01	ci right 6.192779e-01	k: 6097	n:10000
RUFY2   10000 perm   2 sec   (6210 perm/sec)   p_kst 6.097000e-01   p_cons 4.841000e-01   p_joint 7.280000e-01

Outputting figure to mutsig2_images.part000000000151/RUFY2.2_2119_10000_0.6097_0.4841_0.728.png
                gene_name: RUFY2
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 75 percent done.
RUFY3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.294682e-02	ci left: 4.446055e-01	ci right 4.642211e-01	k: 4544	n:10000
Cons ci ratio: 5.694681e-02	ci left: 3.122498e-01	ci right 3.306543e-01	k: 3214	n:10000
KS ci ratio: 1.412003e-02	ci left: 8.787895e-01	ci right 8.913852e-01	k: 8852	n:10000
RUFY3   10000 perm   2 sec   (6097 perm/sec)   p_kst 8.852000e-01   p_cons 3.214000e-01   p_joint 4.544000e-01

Outputting figure to mutsig2_images.part000000000151/RUFY3.2_2378_10000_0.8852_0.3214_0.4544.png
                gene_name: RUFY3
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 78 percent done.
RUSC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.974550e-03	ci left: 9.658346e-01	ci right 9.726884e-01	k: 9694	n:10000
Cons ci ratio: 2.281878e-02	ci left: 7.382572e-01	ci right 7.553988e-01	k: 7469	n:10000
KS ci ratio: 3.828764e-02	ci left: 5.018507e-01	ci right 5.215425e-01	k: 5117	n:10000
RUSC1   10000 perm   2 sec   (5789 perm/sec)   p_kst 5.117000e-01   p_cons 7.469000e-01   p_joint 9.694000e-01

Outputting figure to mutsig2_images.part000000000151/RUSC1.2_2876_10000_0.5117_0.7469_0.9694.png
                gene_name: RUSC1
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.97 

Current progress: 81 percent done.
RUSC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.852670e-03	ci left: 9.575422e-01	ci right 9.651860e-01	k: 9615	n:10000
KS ci ratio: 2.519761e-02	ci left: 6.985753e-01	ci right 7.165037e-01	k: 7076	n:10000
RUSC2   10000 perm   2 sec   (5369 perm/sec)   p_kst 7.076000e-01   p_cons 9.615000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000151/RUSC2.2_4595_10000_0.7076_0.9615_1.png
                gene_name: RUSC2
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
RWDD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.583164e-02	ci left: 8.528403e-01	ci right 8.665494e-01	k: 8598	n:10000
KS ci ratio: 1.200793e-01	ci left: 9.048895e-02	ci right 1.021474e-01	k: 962	n:10000
RWDD3   10000 perm   1 sec   (6785 perm/sec)   p_kst 9.620000e-02   p_cons 8.598000e-01   p_joint 1

Joint ci ratio: 2.321774e-02	ci left: 5.807904e-01	ci right 5.944841e-01	k: 11753	n:20000
Cons ci ratio: 1.124483e-02	ci left: 8.537953e-01	ci right 8.635001e-01	k: 17174	n:20000
KS ci ratio: 8.590112e-02	ci left: 9.023491e-02	ci right 9.838348e-02	k: 1885	n:20000
RWDD3   20000 perm   3 sec   (5957 perm/sec)   p_kst 9.425000e-02   p_cons 8.587000e-01   p_joint 5.876500e-01

Outputting figure to mutsig2_images.part000000000151/RWDD3.2_835_20000_0.09425_0.8587_0.58765.png
                gene_name: RWDD3
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.094 
        ci_ks_bounds_left: 0.090 
       ci_ks_bounds_right: 0.098 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.59 

Current progress: 86 percent done.
RXFP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.560606e-02	ci left: 6.918185e-01	ci right 7.098644e-01	k: 7009	n:10000
Cons ci ratio: 4.407262e-02	ci left: 4.318355e-01	ci right 4.513986e-01	k: 4416	n:10000
KS ci ratio: 6.340926e-02	ci left: 2.676508e-01	ci right 2.852796e-01	k: 2764	n:10000
RXFP2   10000 perm   2 sec   (5986 perm/sec)   p_kst 2.764000e-01   p_cons 4.416000e-01   p_joint 7.009000e-01

Outputting figure to mutsig2_images.part000000000151/RXFP2.2_2337_10000_0.2764_0.4416_0.7009.png
                gene_name: RXFP2
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 89 percent done.
RXRA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.651925e-02	ci left: 6.768003e-01	ci right 6.950913e-01	k: 6860	n:10000
Cons ci ratio: 3.550329e-02	ci left: 5.394848e-01	ci right 5.590865e-01	k: 5493	n:10000
KS ci ratio: 3.699839e-02	ci left: 5.189593e-01	ci right 5.386240e-01	k: 5288	n:10000
RXRA   10000 perm   2 sec   (6446 perm/sec)   p_kst 5.288000e-01   p_cons 5.493000e-01   p_joint 6.860000e-01

Outputting figure to mutsig2_images.part000000000151/RXRA.2_1429_10000_0.5288_0.5493_0.686.png
                gene_name: RXRA
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 92 percent done.
S100PBP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.333780e-02	ci left: 7.295662e-01	ci right 7.468948e-01	k: 7383	n:10000
KS ci ratio: 2.674720e-02	ci left: 6.730726e-01	ci right 6.914211e-01	k: 6823	n:10000
S100PBP   10000 perm   2 sec   (6547 perm/sec)   p_kst 6.823000e-01   p_cons 7.383000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000151/S100PBP.2_1256_10000_0.6823_0.7383_1.png
                gene_name: S100PBP
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
S1PR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.353627e-02	ci left: 2.668589e-01	ci right 2.844719e-01	k: 2756	n:10000
KS ci ratio: 4.360219e-02	ci left: 4.371223e-01	ci right 4.567087e-01	k: 4469	n:10000
S1PR2   10000 perm   2 sec   (6657 perm/sec)   p_kst 4.469000e-01   p_cons 2.756000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000151/S1PR2.2_1066_10000_0.4469_0.2756_1.png
                gene_name: S1PR2
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
SACM1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.761308e-02	ci left: 3.942620e-01	ci right 4.135940e-01	k: 4039	n:10000
Cons ci ratio: 1.783012e-02	ci left: 8.210683e-01	ci right 8.359398e-01	k: 8286	n:10000
KS ci ratio: 6.139518e-02	ci left: 2.806233e-01	ci right 2.984994e-01	k: 2895	n:10000
SACM1L   10000 perm   2 sec   (6353 perm/sec)   p_kst 2.895000e-01   p_cons 8.286000e-01   p_joint 4.039000e-01

Outputting figure to mutsig2_images.part000000000151/SACM1L.2_1844_10000_0.2895_0.8286_0.4039.png
                gene_name: SACM1L
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000151
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 151 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1708>
Subject: Job 8004529: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1708>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000152> was used as the working directory.
Started at Sun Nov 11 15:16:44 2012
Results reported at Sun Nov 11 15:25:36 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000152.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000152.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 152  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000152.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    569.34 sec.
    Max Memory :      4747 MB
    Max Swap   :      7106 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
152
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 152
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 152: processing genes 13662 - 13751
Calculating significance of each gene.
Using projection method.
13662	SAE1	5.807091e-01
13663	SAFB	5.684286e-01
13664	SAFB2	7.562262e-01
13665	SAG	1
13666	SAGE1	1.660595e-02
13667	SALL1	9.924804e-01
13668	SALL2	8.652749e-01
13669	SALL3	9.427221e-01
13670	SALL4	5.632060e-01
13671	SAMD1	1
13672	SAMD10	1
13673	SAMD11	8.843206e-01
13674	SAMD12	4.840130e-01
13675	SAMD13	6.383689e-02
13676	SAMD14	6.256149e-01
13677	SAMD3	4.774692e-01
13678	SAMD4A	6.155581e-01
13679	SAMD4B	9.112470e-01
13680	SAMD5	1
13681	SAMD7	6.671833e-02
13682	SAMD8	3.490732e-01
13683	SAMD9	5.450706e-01
13684	SAMD9L	2.861083e-01
13685	SAMHD1	8.345439e-01
13686	SAMM50	1
13687	SAMSN1	3.415010e-01
13688	SAP130	4.114290e-01
13689	SAP18	1
13690	SAP30	1
13691	SAP30BP	3.711405e-02
13692	SAP30L	1
13693	SAPS1	1
13694	SAPS2	9.858758e-01
13695	SAPS3	9.124099e-01
13696	SAR1A	2.359222e-01
13697	SAR1B	5.579971e-01
13698	SARDH	1.645847e-01
13699	SARM1	7.340719e-01
13700	SARNP	1
13701	SARS	5.802015e-01
13702	SARS2	4.419659e-01
13703	SART1	6.411446e-01
13704	SART3	1
13705	SASH1	9.437352e-01
13706	SASH3	7.041774e-01
13707	SASS6	7.494084e-01
13708	SAT1	1
13709	SAT2	1
13710	SATB1	9.136571e-01
13711	SATB2	1
13712	SATL1	2.329648e-01
13713	SAV1	1
13714	SBDS	1
13715	SBF1	9.985918e-01
13716	SBF2	1
13717	SBK1	1
13718	SBK2	1.424738e-01
13719	SBNO1	8.249964e-01
13720	SBNO2	6.450092e-01
13721	SBSN	1.472203e-01
13722	SC4MOL	1
13723	SC5DL	5.092267e-01
13724	SC65	3.911730e-01
13725	SCAF1	1
13726	SCAI	7.800309e-01
13727	SCAMP1	9.022384e-02
13728	SCAMP2	6.795040e-01
13729	SCAMP3	6.693840e-01
13730	SCAMP4	1
13731	SCAMP5	1
13732	SCAND3	1
13733	SCAP	9.642104e-01
13734	SCAPER	5.682811e-01
13735	SCARA3	9.346528e-01
13736	SCARA5	3.188468e-01
13737	SCARB1	4.007036e-01
13738	SCARB2	8.747530e-01
13739	SCARF1	2.396307e-01
13740	SCARF2	6.272486e-01
13741	SCCPDH	8.365535e-02
13742	SCD	5.274382e-01
13743	SCD5	8.632642e-01
13744	SCEL	1.723578e-01
13745	SCFD1	6.796421e-01
13746	SCFD2	7.922003e-01
13747	SCG2	8.941172e-01
13748	SCG3	1
13749	SCG5	7.843473e-02
13750	SCGB1A1	1
13751	SCGB1C1	1
Done

Running MutSig 2:
Scatter job 152: processing genes 13662 - 13751
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SALL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.172305e-02	ci left: 2.216827e-01	ci right 2.382749e-01	k: 2299	n:10000
Cons ci ratio: 1.378589e-01	ci left: 6.962154e-02	ci right 8.002777e-02	k: 747	n:10000
KS ci ratio: 2.640239e-02	ci left: 6.787147e-01	ci right 6.969757e-01	k: 6879	n:10000
SALL3   10000 perm   2 sec   (4285 perm/sec)   p_kst 6.879000e-01   p_cons 7.470000e-02   p_joint 2.299000e-01

Joint ci ratio: 5.346336e-02	ci left: 2.061546e-01	ci right 2.175293e-01	k: 4236	n:20000
Cons ci ratio: 9.422057e-02	ci left: 7.588504e-02	ci right 8.343770e-02	k: 1592	n:20000
KS ci ratio: 1.862860e-02	ci left: 6.823817e-01	ci right 6.952634e-01	k: 13777	n:20000
SALL3   20000 perm   7 sec   (2882 perm/sec)   p_kst 6.888500e-01   p_cons 7.960000e-02   p_joint 2.118000e-01

Outputting figure to mutsig2_images.part000000000152/SALL3.16_3915_20000_0.68885_0.0796_0.2118.png
                gene_name: SALL3
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.080 
      ci_cons_bounds_left: 0.076 
     ci_cons_bounds_right: 0.083 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 2 percent done.
SALL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.267398e-02	ci left: 7.406834e-01	ci right 7.577712e-01	k: 7493	n:10000
Cons ci ratio: 1.889386e-02	ci left: 8.036941e-01	ci right 8.191241e-01	k: 8115	n:10000
KS ci ratio: 3.042605e-02	ci left: 6.144213e-01	ci right 6.335064e-01	k: 6240	n:10000
SALL1   10000 perm   2 sec   (4410 perm/sec)   p_kst 6.240000e-01   p_cons 8.115000e-01   p_joint 7.493000e-01

Outputting figure to mutsig2_images.part000000000152/SALL1.14_3987_10000_0.624_0.8115_0.7493.png
                gene_name: SALL1
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 4 percent done.
SAMD9L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.704638e-02	ci left: 8.336838e-01	ci right 8.481171e-01	k: 8410	n:10000
Cons ci ratio: 2.971065e-02	ci left: 6.255764e-01	ci right 6.445448e-01	k: 6351	n:10000
KS ci ratio: 2.050926e-02	ci left: 7.769169e-01	ci right 7.931167e-01	k: 7851	n:10000
SAMD9L   10000 perm   2 sec   (4295 perm/sec)   p_kst 7.851000e-01   p_cons 6.351000e-01   p_joint 8.410000e-01

Outputting figure to mutsig2_images.part000000000152/SAMD9L.10_4759_10000_0.7851_0.6351_0.841.png
                gene_name: SAMD9L
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 6 percent done.
SAGE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.154075e-02	ci left: 9.148185e-01	ci right 9.255352e-01	k: 9203	n:10000
Cons ci ratio: 1.288838e-02	ci left: 8.965182e-01	ci right 9.082462e-01	k: 9025	n:10000
KS ci ratio: 1.864654e-02	ci left: 8.077560e-01	ci right 8.230598e-01	k: 8155	n:10000
SAGE1   10000 perm   2 sec   (4633 perm/sec)   p_kst 8.155000e-01   p_cons 9.025000e-01   p_joint 9.203000e-01

Outputting figure to mutsig2_images.part000000000152/SAGE1.8_2791_10000_0.8155_0.9025_0.9203.png
                gene_name: SAGE1
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.93 

Current progress: 9 percent done.
SATB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.840456e-02	ci left: 8.117176e-01	ci right 8.268959e-01	k: 8194	n:10000
Cons ci ratio: 1.605409e-02	ci left: 8.493730e-01	ci right 8.632188e-01	k: 8564	n:10000
KS ci ratio: 2.760851e-02	ci left: 6.590747e-01	ci right 6.776271e-01	k: 6684	n:10000
SATB2   10000 perm   2 sec   (5224 perm/sec)   p_kst 6.684000e-01   p_cons 8.564000e-01   p_joint 8.194000e-01

Outputting figure to mutsig2_images.part000000000152/SATB2.8_2242_10000_0.6684_0.8564_0.8194.png
                gene_name: SATB2
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 11 percent done.
SCAND3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.783046e-02	ci left: 1.587554e-01	ci right 1.734397e-01	k: 1660	n:10000
Cons ci ratio: 4.586852e-02	ci left: 4.122941e-01	ci right 4.317514e-01	k: 4220	n:10000
KS ci ratio: 9.169905e-02	ci left: 1.473694e-01	ci right 1.616325e-01	k: 1544	n:10000
SCAND3   10000 perm   2 sec   (5241 perm/sec)   p_kst 1.544000e-01   p_cons 4.220000e-01   p_joint 1.660000e-01

Outputting figure to mutsig2_images.part000000000152/SCAND3.7_3994_10000_0.1544_0.422_0.166.png
                gene_name: SCAND3
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 13 percent done.
SCARF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.129090e-02	ci left: 2.813167e-01	ci right 2.992056e-01	k: 2902	n:10000
Cons ci ratio: 2.110964e-02	ci left: 7.668886e-01	ci right 7.833508e-01	k: 7752	n:10000
KS ci ratio: 8.012969e-02	ci left: 1.853052e-01	ci right 2.008740e-01	k: 1930	n:10000
SCARF1   10000 perm   2 sec   (4950 perm/sec)   p_kst 1.930000e-01   p_cons 7.752000e-01   p_joint 2.902000e-01

Outputting figure to mutsig2_images.part000000000152/SCARF1.7_2537_10000_0.193_0.7752_0.2902.png
                gene_name: SCARF1
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 15 percent done.
SAMD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.035205e-01	ci left: 1.188712e-01	ci right 1.319479e-01	k: 1253	n:10000
Cons ci ratio: 4.897433e-02	ci left: 3.808216e-01	ci right 4.000423e-01	k: 3904	n:10000
KS ci ratio: 1.582613e-01	ci left: 5.320919e-02	ci right 6.245049e-02	k: 577	n:10000
SAMD3   10000 perm   2 sec   (5735 perm/sec)   p_kst 5.770000e-02   p_cons 3.904000e-01   p_joint 1.253000e-01

Joint ci ratio: 9.320713e-02	ci left: 7.745059e-02	ci right 8.507167e-02	k: 1624	n:20000
Cons ci ratio: 3.545495e-02	ci left: 3.725684e-01	ci right 3.860667e-01	k: 7586	n:20000
KS ci ratio: 1.163560e-01	ci left: 5.056727e-02	ci right 5.686327e-02	k: 1073	n:20000
SAMD3   20000 perm   4 sec   (5166 perm/sec)   p_kst 5.365000e-02   p_cons 3.793000e-01   p_joint 8.120000e-02

Joint ci ratio: 7.016582e-02	ci left: 9.091730e-02	ci right 9.756152e-02	k: 2826	n:30000
Cons ci ratio: 2.818421e-02	ci left: 3.864696e-01	ci right 3.975513e-01	k: 11760	n:30000
KS ci ratio: 9.351148e-02	ci left: 5.274009e-02	ci right 5.794645e-02	k: 1659	n:30000
SAMD3   30000 perm   6 sec   (4947 perm/sec)   p_kst 5.530000e-02   p_cons 3.920000e-01   p_joint 9.420000e-02

Outputting figure to mutsig2_images.part000000000152/SAMD3.6_1619_30000_0.0553_0.392_0.0942.png
                gene_name: SAMD3
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.055 
        ci_ks_bounds_left: 0.053 
       ci_ks_bounds_right: 0.058 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.094 
     ci_joint_bounds_left: 0.091 
    ci_joint_bounds_right: 0.098 

Current progress: 17 percent done.
SAMD9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.977843e-02	ci left: 4.827546e-01	ci right 5.024497e-01	k: 4926	n:10000
Cons ci ratio: 3.623340e-02	ci left: 5.293701e-01	ci right 5.490070e-01	k: 5392	n:10000
KS ci ratio: 7.321256e-02	ci left: 2.145771e-01	ci right 2.309847e-01	k: 2227	n:10000
SAMD9   10000 perm   2 sec   (4708 perm/sec)   p_kst 2.227000e-01   p_cons 5.392000e-01   p_joint 4.926000e-01

Outputting figure to mutsig2_images.part000000000152/SAMD9.6_4774_10000_0.2227_0.5392_0.4926.png
                gene_name: SAMD9
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 19 percent done.
SARDH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.041364e-02	ci left: 1.842223e-01	ci right 1.997575e-01	k: 1919	n:10000
Cons ci ratio: 1.831486e-01	ci left: 3.977673e-02	ci right 4.789171e-02	k: 437	n:10000
KS ci ratio: 4.432366e-02	ci left: 4.290429e-01	ci right 4.485928e-01	k: 4388	n:10000
SARDH   10000 perm   2 sec   (5386 perm/sec)   p_kst 4.388000e-01   p_cons 4.370000e-02   p_joint 1.919000e-01

Joint ci ratio: 5.975904e-02	ci left: 1.717327e-01	ci right 1.823614e-01	k: 3540	n:20000
Cons ci ratio: 1.275416e-01	ci left: 4.221676e-02	ci right 4.801642e-02	k: 901	n:20000
KS ci ratio: 3.099985e-02	ci left: 4.373472e-01	ci right 4.511690e-01	k: 8885	n:20000
SARDH   20000 perm   4 sec   (4593 perm/sec)   p_kst 4.442500e-01   p_cons 4.505000e-02   p_joint 1.770000e-01

Joint ci ratio: 4.807714e-02	ci left: 1.770208e-01	ci right 1.857744e-01	k: 5441	n:30000
Cons ci ratio: 1.033802e-01	ci left: 4.336429e-02	ci right 4.812418e-02	k: 1371	n:30000
KS ci ratio: 2.529919e-02	ci left: 4.388660e-01	ci right 4.501448e-01	k: 13335	n:30000
SARDH   30000 perm   7 sec   (4481 perm/sec)   p_kst 4.445000e-01   p_cons 4.570000e-02   p_joint 1.813667e-01

Joint ci ratio: 4.725142e-02	ci left: 1.433203e-01	ci right 1.502811e-01	k: 5871	n:40000
Cons ci ratio: 8.915632e-02	ci left: 4.404101e-02	ci right 4.817521e-02	k: 1843	n:40000
KS ci ratio: 2.186022e-02	ci left: 4.407457e-01	ci right 4.505121e-01	k: 17825	n:40000
SARDH   40000 perm   9 sec   (4382 perm/sec)   p_kst 4.456250e-01   p_cons 4.607500e-02   p_joint 1.467750e-01

Outputting figure to mutsig2_images.part000000000152/SARDH.6_2837_40000_0.44562_0.046075_0.14677.png
                gene_name: SARDH
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.046 
      ci_cons_bounds_left: 0.044 
     ci_cons_bounds_right: 0.048 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 21 percent done.
SALL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.967515e-02	ci left: 4.840539e-01	ci right 5.037497e-01	k: 4939	n:10000
KS ci ratio: 1.585132e-02	ci left: 8.525343e-01	ci right 8.662556e-01	k: 8595	n:10000
SALL2   10000 perm   2 sec   (4588 perm/sec)   p_kst 8.595000e-01   p_cons 4.939000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000152/SALL2.5_3032_10000_0.8595_0.4939_1.png
                gene_name: SALL2
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 23 percent done.
SALL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.416248e-02	ci left: 2.629989e-01	ci right 2.805343e-01	k: 2717	n:10000
Cons ci ratio: 8.297085e-03	ci left: 9.530476e-01	ci right 9.610834e-01	k: 9572	n:10000
KS ci ratio: 1.127694e-01	ci left: 1.016890e-01	ci right 1.139406e-01	k: 1077	n:10000
SALL4   10000 perm   2 sec   (5178 perm/sec)   p_kst 1.077000e-01   p_cons 9.572000e-01   p_joint 2.717000e-01

Joint ci ratio: 5.457652e-02	ci left: 1.994233e-01	ci right 2.106626e-01	k: 4100	n:20000
Cons ci ratio: 5.846203e-03	ci left: 9.545604e-01	ci right 9.602056e-01	k: 19149	n:20000
KS ci ratio: 7.922764e-02	ci left: 1.047130e-01	ci right 1.134010e-01	k: 2180	n:20000
SALL4   20000 perm   4 sec   (4716 perm/sec)   p_kst 1.090000e-01   p_cons 9.574500e-01   p_joint 2.050000e-01

Outputting figure to mutsig2_images.part000000000152/SALL4.5_3178_20000_0.109_0.95745_0.205.png
                gene_name: SALL4
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 26 percent done.
SAP130
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.446865e-02	ci left: 5.541131e-01	ci right 5.736497e-01	k: 5639	n:10000
Cons ci ratio: 4.037980e-02	ci left: 4.752601e-01	ci right 4.949486e-01	k: 4851	n:10000
KS ci ratio: 4.337364e-02	ci left: 4.397162e-01	ci right 4.593132e-01	k: 4495	n:10000
SAP130   10000 perm   2 sec   (4999 perm/sec)   p_kst 4.495000e-01   p_cons 4.851000e-01   p_joint 5.639000e-01

Outputting figure to mutsig2_images.part000000000152/SAP130.5_3336_10000_0.4495_0.4851_0.5639.png
                gene_name: SAP130
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 28 percent done.
SASH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.209473e-02	ci left: 7.503916e-01	ci right 7.672574e-01	k: 7589	n:10000
Cons ci ratio: 2.976835e-02	ci left: 6.246718e-01	ci right 6.436500e-01	k: 6342	n:10000
KS ci ratio: 2.749650e-02	ci left: 6.608869e-01	ci right 6.794139e-01	k: 6702	n:10000
SASH1   10000 perm   2 sec   (4842 perm/sec)   p_kst 6.702000e-01   p_cons 6.342000e-01   p_joint 7.589000e-01

Outputting figure to mutsig2_images.part000000000152/SASH1.5_3824_10000_0.6702_0.6342_0.7589.png
                gene_name: SASH1
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 30 percent done.
SCAPER
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.835874e-01	ci left: 3.958555e-02	ci right 4.768301e-02	k: 435	n:10000
Cons ci ratio: 5.275826e-02	ci left: 3.462109e-01	ci right 3.650732e-01	k: 3556	n:10000
KS ci ratio: 1.789177e-01	ci left: 4.168977e-02	ci right 4.997740e-02	k: 457	n:10000
SCAPER   10000 perm   2 sec   (5185 perm/sec)   p_kst 4.570000e-02   p_cons 3.556000e-01   p_joint 4.350000e-02

Joint ci ratio: 9.105888e-02	ci left: 8.092569e-02	ci right 8.869552e-02	k: 1695	n:20000
Cons ci ratio: 3.724061e-02	ci left: 3.498085e-01	ci right 3.631333e-01	k: 7129	n:20000
KS ci ratio: 1.239845e-01	ci left: 4.464158e-02	ci right 5.059083e-02	k: 951	n:20000
SCAPER   20000 perm   4 sec   (4463 perm/sec)   p_kst 4.755000e-02   p_cons 3.564500e-01   p_joint 8.475000e-02

Joint ci ratio: 6.702994e-02	ci left: 9.889277e-02	ci right 1.057845e-01	k: 3069	n:30000
Cons ci ratio: 3.033404e-02	ci left: 3.521405e-01	ci right 3.630204e-01	k: 10727	n:30000
KS ci ratio: 1.032226e-01	ci left: 4.349433e-02	ci right 4.826078e-02	k: 1375	n:30000
SCAPER   30000 perm   7 sec   (4346 perm/sec)   p_kst 4.583333e-02   p_cons 3.575667e-01   p_joint 1.023000e-01

Joint ci ratio: 6.312636e-02	ci left: 8.514267e-02	ci right 9.071732e-02	k: 3516	n:40000
Cons ci ratio: 2.632014e-02	ci left: 3.520037e-01	ci right 3.614171e-01	k: 14268	n:40000
KS ci ratio: 8.902986e-02	ci left: 4.416335e-02	ci right 4.830285e-02	k: 1848	n:40000
SCAPER   40000 perm   9 sec   (4268 perm/sec)   p_kst 4.620000e-02   p_cons 3.567000e-01   p_joint 8.790000e-02

Outputting figure to mutsig2_images.part000000000152/SCAPER.5_4365_40000_0.0462_0.3567_0.0879.png
                gene_name: SCAPER
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.046 
        ci_ks_bounds_left: 0.044 
       ci_ks_bounds_right: 0.048 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.088 
     ci_joint_bounds_left: 0.085 
    ci_joint_bounds_right: 0.091 

Current progress: 32 percent done.
SCEL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.945361e-02	ci left: 4.868526e-01	ci right 5.065494e-01	k: 4967	n:10000
Cons ci ratio: 6.077436e-02	ci left: 2.847843e-01	ci right 3.027359e-01	k: 2937	n:10000
KS ci ratio: 3.804326e-02	ci left: 5.050514e-01	ci right 5.247399e-01	k: 5149	n:10000
SCEL   10000 perm   2 sec   (5401 perm/sec)   p_kst 5.149000e-01   p_cons 2.937000e-01   p_joint 4.967000e-01

Outputting figure to mutsig2_images.part000000000152/SCEL.5_2195_10000_0.5149_0.2937_0.4967.png
                gene_name: SCEL
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 34 percent done.
SAMD7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.027488e-02	ci left: 4.765590e-01	ci right 4.962490e-01	k: 4864	n:10000
Cons ci ratio: 3.361463e-02	ci left: 5.664436e-01	ci right 5.859120e-01	k: 5762	n:10000
KS ci ratio: 6.210389e-02	ci left: 2.759680e-01	ci right 2.937575e-01	k: 2848	n:10000
SAMD7   10000 perm   2 sec   (6373 perm/sec)   p_kst 2.848000e-01   p_cons 5.762000e-01   p_joint 4.864000e-01

Outputting figure to mutsig2_images.part000000000152/SAMD7.4_1369_10000_0.2848_0.5762_0.4864.png
                gene_name: SAMD7
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 36 percent done.
SAP30BP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.314920e-02	ci left: 2.148731e-01	ci right 2.312886e-01	k: 2230	n:10000
Cons ci ratio: 9.416248e-02	ci left: 1.407013e-01	ci right 1.547046e-01	k: 1476	n:10000
KS ci ratio: 8.432283e-02	ci left: 1.701542e-01	ci right 1.852341e-01	k: 1776	n:10000
SAP30BP   10000 perm   2 sec   (6311 perm/sec)   p_kst 1.776000e-01   p_cons 1.476000e-01   p_joint 2.230000e-01

Outputting figure to mutsig2_images.part000000000152/SAP30BP.4_971_10000_0.1776_0.1476_0.223.png
                gene_name: SAP30BP
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 38 percent done.
SATB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.172396e-02	ci left: 5.945361e-01	ci right 6.138031e-01	k: 6042	n:10000
Cons ci ratio: 5.918697e-03	ci left: 9.747193e-01	ci right 9.805979e-01	k: 9778	n:10000
KS ci ratio: 3.457387e-02	ci left: 5.526098e-01	ci right 5.721538e-01	k: 5624	n:10000
SATB1   10000 perm   2 sec   (4718 perm/sec)   p_kst 5.624000e-01   p_cons 9.778000e-01   p_joint 6.042000e-01

Outputting figure to mutsig2_images.part000000000152/SATB1.4_2332_10000_0.5624_0.9778_0.6042.png
                gene_name: SATB1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 40 percent done.
SBNO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.651450e-02	ci left: 8.421365e-01	ci right 8.562594e-01	k: 8493	n:10000
Cons ci ratio: 1.310676e-02	ci left: 8.934402e-01	ci right 9.053260e-01	k: 8995	n:10000
KS ci ratio: 3.856436e-02	ci left: 4.982503e-01	ci right 5.179450e-01	k: 5081	n:10000
SBNO1   10000 perm   2 sec   (5035 perm/sec)   p_kst 5.081000e-01   p_cons 8.995000e-01   p_joint 8.493000e-01

Outputting figure to mutsig2_images.part000000000152/SBNO1.4_4306_10000_0.5081_0.8995_0.8493.png
                gene_name: SBNO1
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 43 percent done.
SCAP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.077787e-02	ci left: 4.703648e-01	ci right 4.900467e-01	k: 4802	n:10000
KS ci ratio: 2.932725e-02	ci left: 6.316085e-01	ci right 6.505093e-01	k: 6411	n:10000
SCAP   10000 perm   2 sec   (5109 perm/sec)   p_kst 6.411000e-01   p_cons 4.802000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000152/SCAP.4_3928_10000_0.6411_0.4802_1.png
                gene_name: SCAP
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 45 percent done.
SCCPDH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.124049e-02	ci left: 2.240520e-01	ci right 2.407042e-01	k: 2323	n:10000
Cons ci ratio: 1.173999e-01	ci left: 9.438193e-02	ci right 1.062521e-01	k: 1002	n:10000
KS ci ratio: 2.339818e-02	ci left: 7.285559e-01	ci right 7.459057e-01	k: 7373	n:10000
SCCPDH   10000 perm   2 sec   (6043 perm/sec)   p_kst 7.373000e-01   p_cons 1.002000e-01   p_joint 2.323000e-01

Joint ci ratio: 3.850338e-02	ci left: 3.347273e-01	ci right 3.479189e-01	k: 6826	n:20000
Cons ci ratio: 8.404411e-02	ci left: 9.396221e-02	ci right 1.022551e-01	k: 1961	n:20000
KS ci ratio: 1.656873e-02	ci left: 7.305874e-01	ci right 7.428437e-01	k: 14735	n:20000
SCCPDH   20000 perm   4 sec   (5426 perm/sec)   p_kst 7.367500e-01   p_cons 9.805000e-02   p_joint 3.413000e-01

Outputting figure to mutsig2_images.part000000000152/SCCPDH.4_1338_20000_0.73675_0.09805_0.3413.png
                gene_name: SCCPDH
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.098 
      ci_cons_bounds_left: 0.094 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 47 percent done.
SAFB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.644158e-01	ci left: 3.455366e-03	ci right 6.245157e-03	k: 47	n:10000
Cons ci ratio: 8.327051e-02	ci left: 1.737925e-01	ci right 1.889935e-01	k: 1813	n:10000
KS ci ratio: 6.432188e-01	ci left: 2.522631e-03	ci right 4.980467e-03	k: 36	n:10000
SAFB   10000 perm   2 sec   (5730 perm/sec)   p_kst 3.600000e-03   p_cons 1.813000e-01   p_joint 4.700000e-03

Joint ci ratio: 2.504519e-01	ci left: 1.058411e-02	ci right 1.366018e-02	k: 241	n:20000
Cons ci ratio: 6.136585e-02	ci left: 1.642247e-01	ci right 1.746715e-01	k: 3388	n:20000
KS ci ratio: 4.548356e-01	ci left: 2.862076e-03	ci right 4.587170e-03	k: 73	n:20000
SAFB   20000 perm   4 sec   (5162 perm/sec)   p_kst 3.650000e-03   p_cons 1.694000e-01   p_joint 1.205000e-02

Joint ci ratio: 2.569179e-01	ci left: 6.710907e-03	ci right 8.719528e-03	k: 230	n:30000
Cons ci ratio: 5.019742e-02	ci left: 1.646759e-01	ci right 1.731883e-01	k: 5067	n:30000
KS ci ratio: 3.601489e-01	ci left: 3.226442e-03	ci right 4.672237e-03	k: 117	n:30000
SAFB   30000 perm   6 sec   (4939 perm/sec)   p_kst 3.900000e-03   p_cons 1.689000e-01   p_joint 7.666667e-03

Joint ci ratio: 2.053802e-01	ci left: 8.097782e-03	ci right 9.974535e-03	k: 360	n:40000
Cons ci ratio: 4.329259e-02	ci left: 1.664048e-01	ci right 1.737932e-01	k: 6803	n:40000
KS ci ratio: 3.132347e-01	ci left: 3.289902e-03	ci right 4.533824e-03	k: 155	n:40000
SAFB   40000 perm   8 sec   (4785 perm/sec)   p_kst 3.875000e-03   p_cons 1.700750e-01   p_joint 9.000000e-03

Joint ci ratio: 2.406192e-01	ci left: 4.644831e-03	ci right 5.933632e-03	k: 263	n:50000
Cons ci ratio: 3.715549e-02	ci left: 1.786861e-01	ci right 1.854709e-01	k: 9103	n:50000
KS ci ratio: 2.830962e-01	ci left: 3.279683e-03	ci right 4.379160e-03	k: 190	n:50000
SAFB   50000 perm   11 sec   (4660 perm/sec)   p_kst 3.800000e-03   p_cons 1.820600e-01   p_joint 5.260000e-03

Joint ci ratio: 2.296315e-01	ci left: 4.278413e-03	ci right 5.403638e-03	k: 289	n:60000
Cons ci ratio: 3.395011e-02	ci left: 1.787045e-01	ci right 1.848929e-01	k: 10907	n:60000
KS ci ratio: 2.454395e-01	ci left: 3.713948e-03	ci right 4.768227e-03	k: 253	n:60000
SAFB   60000 perm   13 sec   (4556 perm/sec)   p_kst 4.216667e-03   p_cons 1.817833e-01   p_joint 4.816667e-03

Joint ci ratio: 2.176093e-01	ci left: 4.112208e-03	ci right 5.129526e-03	k: 322	n:70000
Cons ci ratio: 3.138200e-02	ci left: 1.794033e-01	ci right 1.851373e-01	k: 12758	n:70000
KS ci ratio: 2.289201e-01	ci left: 3.694010e-03	ci right 4.662087e-03	k: 291	n:70000
SAFB   70000 perm   16 sec   (4465 perm/sec)   p_kst 4.157143e-03   p_cons 1.822571e-01   p_joint 4.600000e-03

Joint ci ratio: 1.910012e-01	ci left: 4.737178e-03	ci right 5.749212e-03	k: 418	n:80000
Cons ci ratio: 3.049386e-02	ci left: 1.685830e-01	ci right 1.738158e-01	k: 13695	n:80000
KS ci ratio: 2.163317e-01	ci left: 3.645367e-03	ci right 4.541185e-03	k: 326	n:80000
SAFB   80000 perm   18 sec   (4372 perm/sec)   p_kst 4.075000e-03   p_cons 1.711875e-01   p_joint 5.225000e-03

Joint ci ratio: 1.968022e-01	ci left: 3.956940e-03	ci right 4.831033e-03	k: 394	n:90000
Cons ci ratio: 2.877921e-02	ci left: 1.684458e-01	ci right 1.733754e-01	k: 15381	n:90000
KS ci ratio: 2.028209e-01	ci left: 3.714121e-03	ci right 4.562775e-03	k: 371	n:90000
SAFB   90000 perm   21 sec   (4261 perm/sec)   p_kst 4.122222e-03   p_cons 1.709000e-01   p_joint 4.377778e-03

Joint ci ratio: 1.927253e-01	ci left: 3.722912e-03	ci right 4.526269e-03	k: 411	n:100000
Cons ci ratio: 2.728514e-02	ci left: 1.687505e-01	ci right 1.734285e-01	k: 17108	n:100000
KS ci ratio: 1.931968e-01	ci left: 3.703875e-03	ci right 4.505309e-03	k: 409	n:100000
SAFB   100000 perm   24 sec   (4119 perm/sec)   p_kst 4.090000e-03   p_cons 1.710800e-01   p_joint 4.110000e-03

Joint ci ratio: 1.831891e-01	ci left: 3.765661e-03	ci right 4.533572e-03	k: 455	n:110000
Cons ci ratio: 2.601111e-02	ci left: 1.689058e-01	ci right 1.733661e-01	k: 18824	n:110000
KS ci ratio: 1.835938e-01	ci left: 3.748311e-03	ci right 4.514561e-03	k: 453	n:110000
SAFB   110000 perm   27 sec   (4068 perm/sec)   p_kst 4.118182e-03   p_cons 1.711273e-01   p_joint 4.136364e-03

Joint ci ratio: 1.850632e-01	ci left: 3.380249e-03	ci right 4.077405e-03	k: 446	n:120000
Cons ci ratio: 2.495976e-02	ci left: 1.683677e-01	ci right 1.726315e-01	k: 20459	n:120000
KS ci ratio: 1.767249e-01	ci left: 3.722421e-03	ci right 4.451866e-03	k: 489	n:120000
SAFB   120000 perm   30 sec   (4002 perm/sec)   p_kst 4.075000e-03   p_cons 1.704917e-01   p_joint 3.716667e-03

Joint ci ratio: 1.806813e-01	ci left: 3.281699e-03	ci right 3.940749e-03	k: 468	n:130000
Cons ci ratio: 2.392398e-02	ci left: 1.691176e-01	ci right 1.732202e-01	k: 22251	n:130000
KS ci ratio: 1.696048e-01	ci left: 3.745163e-03	ci right 4.446473e-03	k: 531	n:130000
SAFB   130000 perm   33 sec   (3953 perm/sec)   p_kst 4.084615e-03   p_cons 1.711615e-01   p_joint 3.600000e-03

Joint ci ratio: 1.876567e-01	ci left: 2.815562e-03	ci right 3.405315e-03	k: 434	n:140000
Cons ci ratio: 2.214220e-02	ci left: 1.808922e-01	ci right 1.849495e-01	k: 25608	n:140000
KS ci ratio: 1.631387e-01	ci left: 3.772013e-03	ci right 4.448780e-03	k: 574	n:140000
SAFB   140000 perm   36 sec   (3904 perm/sec)   p_kst 4.100000e-03   p_cons 1.829143e-01   p_joint 3.100000e-03

Joint ci ratio: 1.836955e-01	ci left: 2.748629e-03	ci right 3.310854e-03	k: 453	n:150000
Cons ci ratio: 2.140535e-02	ci left: 1.807672e-01	ci right 1.846851e-01	k: 27408	n:150000
KS ci ratio: 1.563469e-01	ci left: 3.846969e-03	ci right 4.505757e-03	k: 625	n:150000
SAFB   150000 perm   39 sec   (3853 perm/sec)   p_kst 4.166667e-03   p_cons 1.827200e-01   p_joint 3.020000e-03

Joint ci ratio: 1.542783e-01	ci left: 3.708634e-03	ci right 4.334549e-03	k: 642	n:160000
Cons ci ratio: 2.072316e-02	ci left: 1.808652e-01	ci right 1.846588e-01	k: 29241	n:160000
KS ci ratio: 1.503383e-01	ci left: 3.913066e-03	ci right 4.555103e-03	k: 676	n:160000
SAFB   160000 perm   42 sec   (3805 perm/sec)   p_kst 4.225000e-03   p_cons 1.827563e-01   p_joint 4.012500e-03

Joint ci ratio: 1.502457e-01	ci left: 3.688514e-03	ci right 4.293300e-03	k: 677	n:170000
Cons ci ratio: 2.009121e-02	ci left: 1.811175e-01	ci right 1.847992e-01	k: 31102	n:170000
KS ci ratio: 1.464965e-01	ci left: 3.886783e-03	ci right 4.506784e-03	k: 712	n:170000
SAFB   170000 perm   45 sec   (3756 perm/sec)   p_kst 4.188235e-03   p_cons 1.829529e-01   p_joint 3.982353e-03

Joint ci ratio: 1.561515e-01	ci left: 3.216402e-03	ci right 3.766447e-03	k: 627	n:180000
Cons ci ratio: 1.954644e-02	ci left: 1.808453e-01	ci right 1.844205e-01	k: 32873	n:180000
KS ci ratio: 1.417988e-01	ci left: 3.927907e-03	ci right 4.532677e-03	k: 760	n:180000
SAFB   180000 perm   49 sec   (3706 perm/sec)   p_kst 4.222222e-03   p_cons 1.826278e-01   p_joint 3.483333e-03

Joint ci ratio: 1.597800e-01	ci left: 2.905536e-03	ci right 3.415073e-03	k: 599	n:190000
Cons ci ratio: 1.902186e-02	ci left: 1.809437e-01	ci right 1.844239e-01	k: 34709	n:190000
KS ci ratio: 1.382138e-01	ci left: 3.924327e-03	ci right 4.512011e-03	k: 800	n:190000
SAFB   190000 perm   52 sec   (3660 perm/sec)   p_kst 4.210526e-03   p_cons 1.826789e-01   p_joint 3.152632e-03

Joint ci ratio: 1.489738e-01	ci left: 3.192930e-03	ci right 3.711627e-03	k: 689	n:200000
Cons ci ratio: 1.852343e-02	ci left: 1.812577e-01	ci right 1.846515e-01	k: 36590	n:200000
KS ci ratio: 1.352920e-01	ci left: 3.897119e-03	ci right 4.467399e-03	k: 835	n:200000
SAFB   200000 perm   55 sec   (3615 perm/sec)   p_kst 4.175000e-03   p_cons 1.829500e-01   p_joint 3.445000e-03

Joint ci ratio: 1.306780e-01	ci left: 3.987765e-03	ci right 4.549864e-03	k: 895	n:210000
Cons ci ratio: 1.805991e-02	ci left: 1.815807e-01	ci right 1.848947e-01	k: 38479	n:210000
KS ci ratio: 1.323955e-01	ci left: 3.881831e-03	ci right 4.436755e-03	k: 872	n:210000
SAFB   210000 perm   59 sec   (3572 perm/sec)   p_kst 4.152381e-03   p_cons 1.832333e-01   p_joint 4.261905e-03

Joint ci ratio: 1.307641e-01	ci left: 3.802082e-03	ci right 4.338387e-03	k: 894	n:220000
Cons ci ratio: 1.762339e-02	ci left: 1.819796e-01	ci right 1.852197e-01	k: 40391	n:220000
KS ci ratio: 1.292502e-01	ci left: 3.894444e-03	ci right 4.436930e-03	k: 915	n:220000
SAFB   220000 perm   62 sec   (3526 perm/sec)   p_kst 4.159091e-03   p_cons 1.835955e-01   p_joint 4.063636e-03

Joint ci ratio: 1.291205e-01	ci left: 3.733515e-03	ci right 4.253021e-03	k: 917	n:230000
Cons ci ratio: 1.722427e-02	ci left: 1.822189e-01	ci right 1.853891e-01	k: 42274	n:230000
KS ci ratio: 1.271201e-01	ci left: 3.855576e-03	ci right 4.383129e-03	k: 946	n:230000
SAFB   230000 perm   66 sec   (3483 perm/sec)   p_kst 4.113043e-03   p_cons 1.838000e-01   p_joint 3.986957e-03

Joint ci ratio: 1.331206e-01	ci left: 3.360287e-03	ci right 3.843490e-03	k: 863	n:240000
Cons ci ratio: 1.686842e-02	ci left: 1.821317e-01	ci right 1.852342e-01	k: 44083	n:240000
KS ci ratio: 1.240768e-01	ci left: 3.884611e-03	ci right 4.402477e-03	k: 993	n:240000
SAFB   240000 perm   70 sec   (3440 perm/sec)   p_kst 4.137500e-03   p_cons 1.836792e-01   p_joint 3.595833e-03

Joint ci ratio: 1.155808e-01	ci left: 4.315197e-03	ci right 4.848389e-03	k: 1144	n:250000
Cons ci ratio: 1.652581e-02	ci left: 1.821957e-01	ci right 1.852357e-01	k: 45928	n:250000
KS ci ratio: 1.219500e-01	ci left: 3.864916e-03	ci right 4.370687e-03	k: 1028	n:250000
SAFB   250000 perm   74 sec   (3398 perm/sec)   p_kst 4.112000e-03   p_cons 1.837120e-01   p_joint 4.576000e-03

Joint ci ratio: 1.135184e-01	ci left: 4.306136e-03	ci right 4.828079e-03	k: 1186	n:260000
Cons ci ratio: 1.619994e-02	ci left: 1.823167e-01	ci right 1.852981e-01	k: 47789	n:260000
KS ci ratio: 1.197595e-01	ci left: 3.858000e-03	ci right 4.353155e-03	k: 1066	n:260000
SAFB   260000 perm   77 sec   (3357 perm/sec)   p_kst 4.100000e-03   p_cons 1.838038e-01   p_joint 4.561538e-03

Joint ci ratio: 1.162137e-01	ci left: 3.952353e-03	ci right 4.443568e-03	k: 1132	n:270000
Cons ci ratio: 1.589300e-02	ci left: 1.824218e-01	ci right 1.853479e-01	k: 49648	n:270000
KS ci ratio: 1.177901e-01	ci left: 3.844481e-03	ci right 4.329222e-03	k: 1102	n:270000
SAFB   270000 perm   81 sec   (3319 perm/sec)   p_kst 4.081481e-03   p_cons 1.838815e-01   p_joint 4.192593e-03

Joint ci ratio: 1.169501e-01	ci left: 3.762634e-03	ci right 4.233438e-03	k: 1118	n:280000
Cons ci ratio: 1.559602e-02	ci left: 1.826517e-01	ci right 1.855263e-01	k: 51544	n:280000
KS ci ratio: 1.157617e-01	ci left: 3.842395e-03	ci right 4.317960e-03	k: 1141	n:280000
SAFB   280000 perm   85 sec   (3278 perm/sec)   p_kst 4.075000e-03   p_cons 1.840857e-01   p_joint 3.992857e-03

Joint ci ratio: 1.003815e-01	ci left: 4.968357e-03	ci right 5.496777e-03	k: 1516	n:290000
Cons ci ratio: 1.532756e-02	ci left: 1.826221e-01	ci right 1.854463e-01	k: 53369	n:290000
KS ci ratio: 1.134015e-01	ci left: 3.870676e-03	ci right 4.339320e-03	k: 1189	n:290000
SAFB   290000 perm   90 sec   (3236 perm/sec)   p_kst 4.100000e-03   p_cons 1.840310e-01   p_joint 5.227586e-03

Joint ci ratio: 1.070877e-01	ci left: 4.208465e-03	ci right 4.687852e-03	k: 1333	n:300000
Cons ci ratio: 1.505996e-02	ci left: 1.828441e-01	ci right 1.856220e-01	k: 55269	n:300000
KS ci ratio: 1.110002e-01	ci left: 3.910127e-03	ci right 4.372866e-03	k: 1241	n:300000
SAFB   300000 perm   94 sec   (3194 perm/sec)   p_kst 4.136667e-03   p_cons 1.842300e-01   p_joint 4.443333e-03

Joint ci ratio: 1.121466e-01	ci left: 3.705577e-03	ci right 4.148937e-03	k: 1216	n:310000
Cons ci ratio: 1.482069e-02	ci left: 1.827531e-01	ci right 1.854850e-01	k: 57076	n:310000
KS ci ratio: 1.093836e-01	ci left: 3.900058e-03	ci right 4.354451e-03	k: 1278	n:310000
SAFB   310000 perm   98 sec   (3154 perm/sec)   p_kst 4.122581e-03   p_cons 1.841161e-01   p_joint 3.922581e-03

Joint ci ratio: 1.146385e-01	ci left: 3.431858e-03	ci right 3.852209e-03	k: 1164	n:320000
Cons ci ratio: 1.458807e-02	ci left: 1.827585e-01	ci right 1.854472e-01	k: 58912	n:320000
KS ci ratio: 1.077535e-01	ci left: 3.896746e-03	ci right 4.343558e-03	k: 1317	n:320000
SAFB   320000 perm   103 sec   (3119 perm/sec)   p_kst 4.115625e-03   p_cons 1.841000e-01   p_joint 3.637500e-03

Joint ci ratio: 1.325722e-01	ci left: 2.467206e-03	ci right 2.820406e-03	k: 871	n:330000
Cons ci ratio: 1.436404e-02	ci left: 1.828061e-01	ci right 1.854540e-01	k: 60762	n:330000
KS ci ratio: 1.058423e-01	ci left: 3.920234e-03	ci right 4.361270e-03	k: 1365	n:330000
SAFB   330000 perm   107 sec   (3085 perm/sec)   p_kst 4.136364e-03   p_cons 1.841273e-01   p_joint 2.639394e-03

Joint ci ratio: 1.307851e-01	ci left: 2.462904e-03	ci right 2.810365e-03	k: 895	n:340000
Cons ci ratio: 1.415667e-02	ci left: 1.827105e-01	ci right 1.853184e-01	k: 62564	n:340000
KS ci ratio: 1.040293e-01	ci left: 3.942407e-03	ci right 4.377876e-03	k: 1413	n:340000
SAFB   340000 perm   111 sec   (3050 perm/sec)   p_kst 4.155882e-03   p_cons 1.840118e-01   p_joint 2.632353e-03

Joint ci ratio: 1.006938e-01	ci left: 4.094264e-03	ci right 4.531149e-03	k: 1508	n:350000
Cons ci ratio: 1.395498e-02	ci left: 1.826861e-01	ci right 1.852562e-01	k: 64389	n:350000
KS ci ratio: 1.022012e-01	ci left: 3.971726e-03	ci right 4.402261e-03	k: 1464	n:350000
SAFB   350000 perm   116 sec   (3016 perm/sec)   p_kst 4.182857e-03   p_cons 1.839686e-01   p_joint 4.308571e-03

Joint ci ratio: 1.030582e-01	ci left: 3.796427e-03	ci right 4.211619e-03	k: 1440	n:360000
Cons ci ratio: 1.375938e-02	ci left: 1.827132e-01	ci right 1.852474e-01	k: 66232	n:360000
KS ci ratio: 1.006663e-01	ci left: 3.983230e-03	ci right 4.408145e-03	k: 1509	n:360000
SAFB   360000 perm   121 sec   (2982 perm/sec)   p_kst 4.191667e-03   p_cons 1.839778e-01   p_joint 4.000000e-03

Joint ci ratio: 1.014851e-01	ci left: 3.812333e-03	ci right 4.222521e-03	k: 1485	n:370000
Cons ci ratio: 1.357434e-02	ci left: 1.826825e-01	ci right 1.851819e-01	k: 68054	n:370000
KS ci ratio: 9.891161e-02	ci left: 4.017883e-03	ci right 4.438589e-03	k: 1563	n:370000
SAFB   370000 perm   125 sec   (2950 perm/sec)   p_kst 4.224324e-03   p_cons 1.839297e-01   p_joint 4.013514e-03

Joint ci ratio: 1.051781e-01	ci left: 3.450489e-03	ci right 3.836089e-03	k: 1383	n:380000
Cons ci ratio: 1.340139e-02	ci left: 1.825460e-01	ci right 1.850115e-01	k: 69835	n:380000
KS ci ratio: 9.773202e-02	ci left: 4.009689e-03	ci right 4.424243e-03	k: 1601	n:380000
SAFB   380000 perm   130 sec   (2916 perm/sec)   p_kst 4.213158e-03   p_cons 1.837763e-01   p_joint 3.639474e-03

Joint ci ratio: 9.055349e-02	ci left: 4.565437e-03	ci right 5.000945e-03	k: 1864	n:390000
Cons ci ratio: 1.322889e-02	ci left: 1.825522e-01	ci right 1.849858e-01	k: 71669	n:390000
KS ci ratio: 9.686090e-02	ci left: 3.979423e-03	ci right 4.386972e-03	k: 1630	n:390000
SAFB   390000 perm   135 sec   (2882 perm/sec)   p_kst 4.179487e-03   p_cons 1.837667e-01   p_joint 4.779487e-03

Outputting figure to mutsig2_images.part000000000152/SAFB.3_2832_390000_0.0041795_0.18377_0.0047795.png
                gene_name: SAFB
               theta_stop: 0.097 
                    nperm: 390000 
                     p_ks: 0.0042 
        ci_ks_bounds_left: 0.0040 
       ci_ks_bounds_right: 0.0044 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.0048 
     ci_joint_bounds_left: 0.0046 
    ci_joint_bounds_right: 0.0050 

Current progress: 49 percent done.
SAMD4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.852255e-02	ci left: 8.097874e-01	ci right 8.250272e-01	k: 8175	n:10000
KS ci ratio: 2.735360e-02	ci left: 6.632026e-01	ci right 6.816968e-01	k: 6725	n:10000
SAMD4A   10000 perm   2 sec   (6000 perm/sec)   p_kst 6.725000e-01   p_cons 8.175000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000152/SAMD4A.3_2314_10000_0.6725_0.8175_1.png
                gene_name: SAMD4A
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 51 percent done.
SARS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.652327e-02	ci left: 4.054184e-01	ci right 4.248311e-01	k: 4151	n:10000
Cons ci ratio: 8.082601e-03	ci left: 9.552412e-01	ci right 9.630885e-01	k: 9593	n:10000
KS ci ratio: 5.247176e-02	ci left: 3.486956e-01	ci right 3.675871e-01	k: 3581	n:10000
SARS2   10000 perm   2 sec   (6119 perm/sec)   p_kst 3.581000e-01   p_cons 9.593000e-01   p_joint 4.151000e-01

Outputting figure to mutsig2_images.part000000000152/SARS2.3_1702_10000_0.3581_0.9593_0.4151.png
                gene_name: SARS2
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.42 

Current progress: 53 percent done.
SATL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.527447e-02	ci left: 5.426902e-01	ci right 5.622792e-01	k: 5525	n:10000
Cons ci ratio: 9.759959e-03	ci left: 9.369275e-01	ci right 9.462132e-01	k: 9417	n:10000
KS ci ratio: 7.461446e-02	ci left: 2.081653e-01	ci right 2.244003e-01	k: 2162	n:10000
SATL1   10000 perm   2 sec   (6000 perm/sec)   p_kst 2.162000e-01   p_cons 9.417000e-01   p_joint 5.525000e-01

Outputting figure to mutsig2_images.part000000000152/SATL1.3_1919_10000_0.2162_0.9417_0.5525.png
                gene_name: SATL1
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 55 percent done.
SBF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.543583e-02	ci left: 1.664188e-01	ci right 1.813717e-01	k: 1738	n:10000
Cons ci ratio: 1.156144e-01	ci left: 9.710875e-02	ci right 1.091236e-01	k: 1030	n:10000
KS ci ratio: 4.868751e-02	ci left: 3.836086e-01	ci right 4.028536e-01	k: 3932	n:10000
SBF1   10000 perm   2 sec   (4824 perm/sec)   p_kst 3.932000e-01   p_cons 1.030000e-01   p_joint 1.738000e-01

Joint ci ratio: 5.048835e-02	ci left: 2.257183e-01	ci right 2.374598e-01	k: 4631	n:20000
Cons ci ratio: 8.170914e-02	ci left: 9.896761e-02	ci right 1.074481e-01	k: 2063	n:20000
KS ci ratio: 3.422945e-02	ci left: 3.892126e-01	ci right 4.028177e-01	k: 7920	n:20000
SBF1   20000 perm   5 sec   (4403 perm/sec)   p_kst 3.960000e-01   p_cons 1.031500e-01   p_joint 2.315500e-01

Outputting figure to mutsig2_images.part000000000152/SBF1.3_5846_20000_0.396_0.10315_0.23155.png
                gene_name: SBF1
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.099 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 57 percent done.
SBF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.462512e-03	ci left: 9.849077e-01	ci right 9.894019e-01	k: 9873	n:10000
Cons ci ratio: 2.956981e-02	ci left: 6.277880e-01	ci right 6.467320e-01	k: 6373	n:10000
KS ci ratio: 2.738464e-02	ci left: 6.626992e-01	ci right 6.812006e-01	k: 6720	n:10000
SBF2   10000 perm   2 sec   (4734 perm/sec)   p_kst 6.720000e-01   p_cons 6.373000e-01   p_joint 9.873000e-01

Outputting figure to mutsig2_images.part000000000152/SBF2.3_5710_10000_0.672_0.6373_0.9873.png
                gene_name: SBF2
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 60 percent done.
SBSN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.687064e-02	ci left: 6.710580e-01	ci right 6.894369e-01	k: 6803	n:10000
KS ci ratio: 4.247362e-02	ci left: 4.500946e-01	ci right 4.697287e-01	k: 4599	n:10000
SBSN   10000 perm   2 sec   (6071 perm/sec)   p_kst 4.599000e-01   p_cons 6.803000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000152/SBSN.3_1789_10000_0.4599_0.6803_1.png
                gene_name: SBSN
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
SCAMP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.788293e-02	ci left: 6.546456e-01	ci right 6.732588e-01	k: 6640	n:10000
KS ci ratio: 8.673992e-03	ci left: 9.490847e-01	ci right 9.574486e-01	k: 9534	n:10000
SCAMP1   10000 perm   2 sec   (6413 perm/sec)   p_kst 9.534000e-01   p_cons 6.640000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000152/SCAMP1.3_1052_10000_0.9534_0.664_1.png
                gene_name: SCAMP1
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 64 percent done.
SCARB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.621882e-02	ci left: 5.295704e-01	ci right 5.492067e-01	k: 5394	n:10000
Cons ci ratio: 7.298081e-02	ci left: 2.156624e-01	ci right 2.320987e-01	k: 2238	n:10000
KS ci ratio: 4.041214e-02	ci left: 4.748604e-01	ci right 4.945485e-01	k: 4847	n:10000
SCARB1   10000 perm   2 sec   (5936 perm/sec)   p_kst 4.847000e-01   p_cons 2.238000e-01   p_joint 5.394000e-01

Outputting figure to mutsig2_images.part000000000152/SCARB1.3_1702_10000_0.4847_0.2238_0.5394.png
                gene_name: SCARB1
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 66 percent done.
SCG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.570440e-02	ci left: 1.655342e-01	ci right 1.804568e-01	k: 1729	n:10000
Cons ci ratio: 1.806180e-02	ci left: 8.173068e-01	ci right 8.323035e-01	k: 8249	n:10000
KS ci ratio: 1.344875e-01	ci left: 7.301117e-02	ci right 8.363602e-02	k: 782	n:10000
SCG3   10000 perm   2 sec   (6113 perm/sec)   p_kst 7.820000e-02   p_cons 8.249000e-01   p_joint 1.729000e-01

Joint ci ratio: 5.973855e-02	ci left: 1.718315e-01	ci right 1.824626e-01	k: 3542	n:20000
Cons ci ratio: 1.276672e-02	ci left: 8.196619e-01	ci right 8.302435e-01	k: 16500	n:20000
KS ci ratio: 9.513196e-02	ci left: 7.451555e-02	ci right 8.200761e-02	k: 1564	n:20000
SCG3   20000 perm   4 sec   (5464 perm/sec)   p_kst 7.820000e-02   p_cons 8.250000e-01   p_joint 1.771000e-01

Outputting figure to mutsig2_images.part000000000152/SCG3.3_1455_20000_0.0782_0.825_0.1771.png
                gene_name: SCG3
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.078 
        ci_ks_bounds_left: 0.075 
       ci_ks_bounds_right: 0.082 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 68 percent done.
SCG5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.331581e-02	ci left: 8.904663e-01	ci right 9.025016e-01	k: 8966	n:10000
Cons ci ratio: 3.266670e-03	ci left: 9.913872e-01	ci right 9.947158e-01	k: 9932	n:10000
KS ci ratio: 4.175413e-02	ci left: 4.585802e-01	ci right 4.782382e-01	k: 4684	n:10000
SCG5   10000 perm   1 sec   (6781 perm/sec)   p_kst 4.684000e-01   p_cons 9.932000e-01   p_joint 8.966000e-01

Outputting figure to mutsig2_images.part000000000152/SCG5.3_659_10000_0.4684_0.9932_0.8966.png
                gene_name: SCG5
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 70 percent done.
SAFB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.125490e-02	ci left: 7.644585e-01	ci right 7.809823e-01	k: 7728	n:10000
Cons ci ratio: 6.967923e-02	ci left: 2.319523e-01	ci right 2.487992e-01	k: 2403	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
SAFB2   10000 perm   2 sec   (6017 perm/sec)   p_kst 1   p_cons 2.403000e-01   p_joint 7.728000e-01

Outputting figure to mutsig2_images.part000000000152/SAFB2.2_2946_10000_1_0.2403_0.7728.png
                gene_name: SAFB2
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 72 percent done.
SAMD13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.535413e-02	ci left: 3.246562e-01	ci right 3.432406e-01	k: 3339	n:10000
Cons ci ratio: 2.499685e-02	ci left: 7.019041e-01	ci right 7.197729e-01	k: 7109	n:10000
KS ci ratio: 6.481713e-02	ci left: 2.590407e-01	ci right 2.764948e-01	k: 2677	n:10000
SAMD13   10000 perm   2 sec   (5789 perm/sec)   p_kst 2.677000e-01   p_cons 7.109000e-01   p_joint 3.339000e-01

Outputting figure to mutsig2_images.part000000000152/SAMD13.2_367_10000_0.2677_0.7109_0.3339.png
                gene_name: SAMD13
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 74 percent done.
SAMD8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.682742e-02	ci left: 6.717631e-01	ci right 6.901314e-01	k: 6810	n:10000
KS ci ratio: 1.882593e-02	ci left: 8.048110e-01	ci right 8.202065e-01	k: 8126	n:10000
SAMD8   10000 perm   1 sec   (6918 perm/sec)   p_kst 8.126000e-01   p_cons 6.810000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000152/SAMD8.2_1306_10000_0.8126_0.681_1.png
                gene_name: SAMD8
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
SAMSN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.376126e-02	ci left: 4.353266e-01	ci right 4.549054e-01	k: 4451	n:10000
Cons ci ratio: 7.577795e-02	ci left: 2.030380e-01	ci right 2.191306e-01	k: 2110	n:10000
KS ci ratio: 8.112025e-02	ci left: 1.815648e-01	ci right 1.970166e-01	k: 1892	n:10000
SAMSN1   10000 perm   2 sec   (5599 perm/sec)   p_kst 1.892000e-01   p_cons 2.110000e-01   p_joint 4.451000e-01

Outputting figure to mutsig2_images.part000000000152/SAMSN1.2_1154_10000_0.1892_0.211_0.4451.png
                gene_name: SAMSN1
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.45 

Current progress: 79 percent done.
SAR1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.389760e-02	ci left: 5.623328e-01	ci right 5.818252e-01	k: 5721	n:10000
Cons ci ratio: 1.014468e-02	ci left: 9.323699e-01	ci right 9.419735e-01	k: 9373	n:10000
KS ci ratio: 4.540162e-02	ci left: 4.172776e-01	ci right 4.367649e-01	k: 4270	n:10000
SAR1A   10000 perm   1 sec   (7046 perm/sec)   p_kst 4.270000e-01   p_cons 9.373000e-01   p_joint 5.721000e-01

Outputting figure to mutsig2_images.part000000000152/SAR1A.2_621_10000_0.427_0.9373_0.5721.png
                gene_name: SAR1A
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 81 percent done.
SARS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.274153e-02	ci left: 8.985712e-01	ci right 9.101920e-01	k: 9045	n:10000
KS ci ratio: 9.178519e-03	ci left: 9.435701e-01	ci right 9.523667e-01	k: 9481	n:10000
SARS   10000 perm   1 sec   (6697 perm/sec)   p_kst 9.481000e-01   p_cons 9.045000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000152/SARS.2_1589_10000_0.9481_0.9045_1.png
                gene_name: SARS
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
SART1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.621882e-02	ci left: 5.295704e-01	ci right 5.492067e-01	k: 5394	n:10000
Cons ci ratio: 5.115161e-02	ci left: 3.604268e-01	ci right 3.794491e-01	k: 3699	n:10000
KS ci ratio: 4.747495e-02	ci left: 3.956563e-01	ci right 4.149989e-01	k: 4053	n:10000
SART1   10000 perm   2 sec   (5934 perm/sec)   p_kst 4.053000e-01   p_cons 3.699000e-01   p_joint 5.394000e-01

Outputting figure to mutsig2_images.part000000000152/SART1.2_2483_10000_0.4053_0.3699_0.5394.png
                gene_name: SART1
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 85 percent done.
SASS6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.686500e-02	ci left: 5.207608e-01	ci right 5.404213e-01	k: 5306	n:10000
KS ci ratio: 1.182907e-02	ci left: 9.110088e-01	ci right 9.219471e-01	k: 9166	n:10000
SASS6   10000 perm   2 sec   (5999 perm/sec)   p_kst 9.166000e-01   p_cons 5.306000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000152/SASS6.2_2042_10000_0.9166_0.5306_1.png
                gene_name: SASS6
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
SBK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.102021e-02	ci left: 3.616201e-01	ci right 3.806550e-01	k: 3711	n:10000
Cons ci ratio: 3.448266e-02	ci left: 5.539127e-01	ci right 5.734502e-01	k: 5637	n:10000
KS ci ratio: 6.813143e-02	ci left: 2.401532e-01	ci right 2.571935e-01	k: 2486	n:10000
SBK2   10000 perm   2 sec   (6624 perm/sec)   p_kst 2.486000e-01   p_cons 5.637000e-01   p_joint 3.711000e-01

Outputting figure to mutsig2_images.part000000000152/SBK2.2_1058_10000_0.2486_0.5637_0.3711.png
                gene_name: SBK2
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 89 percent done.
SBNO2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.043788e-01	ci left: 1.171118e-01	ci right 1.301083e-01	k: 1235	n:10000
Cons ci ratio: 3.463711e-02	ci left: 5.517079e-01	ci right 5.712563e-01	k: 5615	n:10000
KS ci ratio: 1.269826e-01	ci left: 8.144990e-02	ci right 9.259206e-02	k: 869	n:10000
SBNO2   10000 perm   2 sec   (5378 perm/sec)   p_kst 8.690000e-02   p_cons 5.615000e-01   p_joint 1.235000e-01

Joint ci ratio: 4.034148e-02	ci left: 3.141831e-01	ci right 3.271691e-01	k: 6413	n:20000
Cons ci ratio: 2.456088e-02	ci left: 5.532375e-01	ci right 5.670450e-01	k: 11203	n:20000
KS ci ratio: 8.892717e-02	ci left: 8.459877e-02	ci right 9.252133e-02	k: 1770	n:20000
SBNO2   20000 perm   4 sec   (4869 perm/sec)   p_kst 8.850000e-02   p_cons 5.601500e-01   p_joint 3.206500e-01

Outputting figure to mutsig2_images.part000000000152/SBNO2.2_4337_20000_0.0885_0.56015_0.32065.png
                gene_name: SBNO2
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.088 
        ci_ks_bounds_left: 0.085 
       ci_ks_bounds_right: 0.093 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 91 percent done.
SC65
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.266670e-03	ci left: 9.913872e-01	ci right 9.947158e-01	k: 9932	n:10000
Cons ci ratio: 3.777008e-02	ci left: 5.086527e-01	ci right 5.283365e-01	k: 5185	n:10000
KS ci ratio: 6.478455e-03	ci left: 9.701607e-01	ci right 9.765595e-01	k: 9735	n:10000
SC65   10000 perm   1 sec   (6752 perm/sec)   p_kst 9.735000e-01   p_cons 5.185000e-01   p_joint 9.932000e-01

Outputting figure to mutsig2_images.part000000000152/SC65.2_1346_10000_0.9735_0.5185_0.9932.png
                gene_name: SC65
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 94 percent done.
SCARA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.727859e-02	ci left: 3.976482e-01	ci right 4.170058e-01	k: 4073	n:10000
Cons ci ratio: 6.688109e-03	ci left: 9.683648e-01	ci right 9.749566e-01	k: 9718	n:10000
KS ci ratio: 8.093572e-02	ci left: 1.822537e-01	ci right 1.977273e-01	k: 1899	n:10000
SCARA5   10000 perm   2 sec   (6566 perm/sec)   p_kst 1.899000e-01   p_cons 9.718000e-01   p_joint 4.073000e-01

Outputting figure to mutsig2_images.part000000000152/SCARA5.2_1520_10000_0.1899_0.9718_0.4073.png
                gene_name: SCARA5
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 96 percent done.
SCFD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.526754e-03	ci left: 9.777025e-01	ci right 9.832126e-01	k: 9806	n:10000
Cons ci ratio: 9.883601e-03	ci left: 9.354766e-01	ci right 9.448650e-01	k: 9403	n:10000
KS ci ratio: 5.836740e-03	ci left: 9.753575e-01	ci right 9.811593e-01	k: 9784	n:10000
SCFD1   10000 perm   2 sec   (6178 perm/sec)   p_kst 9.784000e-01   p_cons 9.403000e-01   p_joint 9.806000e-01

Outputting figure to mutsig2_images.part000000000152/SCFD1.2_2029_10000_0.9784_0.9403_0.9806.png
                gene_name: SCFD1
               theta_stop: 0.0099 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 98 percent done.
SCFD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.333780e-02	ci left: 7.295662e-01	ci right 7.468948e-01	k: 7383	n:10000
KS ci ratio: 2.821473e-02	ci left: 6.493117e-01	ci right 6.679958e-01	k: 6587	n:10000
SCFD2   10000 perm   2 sec   (6145 perm/sec)   p_kst 6.587000e-01   p_cons 7.383000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000152/SCFD2.2_2091_10000_0.6587_0.7383_1.png
                gene_name: SCFD2
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000152
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 152 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1642>
Subject: Job 8004530: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1642>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000153> was used as the working directory.
Started at Sun Nov 11 15:16:44 2012
Results reported at Sun Nov 11 15:24:26 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000153.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000153.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 153  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000153.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    538.96 sec.
    Max Memory :      4652 MB
    Max Swap   :      7222 MB

    Max Processes  :         7
    Max Threads    :        94

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
153
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 153
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 153: processing genes 13752 - 13842
Calculating significance of each gene.
Using projection method.
13752	SCGB1D1	2.179715e-01
13753	SCGB1D2	1
13754	SCGB1D4	1
13755	SCGB2A1	4.808983e-02
13756	SCGB2A2	2.803367e-01
13757	SCGB3A1	1.687158e-01
13758	SCGB3A2	1
13759	SCGBL	2.656158e-01
13760	SCGN	1
13761	SCHIP1	1.560091e-03
13762	SCIN	6.658223e-01
13763	SCLT1	1
13764	SCLY	6.221868e-01
13765	SCMH1	8.403268e-01
13766	SCML1	1
13767	SCML2	1
13768	SCML4	1.431072e-01
13769	SCN10A	9.869714e-01
13770	SCN11A	1.963203e-01
13771	SCN1A	9.697288e-01
13772	SCN1B	1
13773	SCN2A	9.990888e-01
13774	SCN2B	1
13775	SCN3A	9.189050e-02
13776	SCN3B	4.360331e-01
13777	SCN4A	1
13778	SCN4B	1
13779	SCN5A	9.930092e-01
13780	SCN7A	3.001910e-03
13781	SCN8A	6.475162e-01
13782	SCN9A	1
13783	SCNM1	6.849203e-01
13784	SCNN1A	1
13785	SCNN1B	1
13786	SCNN1D	6.114526e-01
13787	SCNN1G	4.175718e-01
13788	SCO1	5.893766e-01
13789	SCO2	1
13790	SCOC	1
13791	SCP2	8.567748e-01
13792	SCPEP1	6.312536e-01
13793	SCRG1	1
13794	SCRIB	9.857993e-01
13795	SCRN1	4.093922e-01
13796	SCRN2	1
13797	SCRN3	6.771141e-01
13798	SCRT1	1
13799	SCRT2	1
13800	SCTR	1
13801	SCUBE1	7.784097e-01
13802	SCUBE2	8.644836e-01
13803	SCUBE3	4.350769e-01
13804	SCYL1	1
13805	SCYL2	9.198023e-01
13806	SCYL3	8.638454e-01
13807	SDAD1	8.338241e-01
13808	SDC1	7.792742e-01
13809	SDC2	1.434062e-01
13810	SDC3	5.244150e-01
13811	SDC4	1
13812	SDCBP	1
13813	SDCBP2	1
13814	SDCCAG1	8.574091e-01
13815	SDCCAG3	8.415472e-01
13816	SDCCAG8	8.590548e-01
13817	SDF2	5.896661e-01
13818	SDF2L1	1
13819	SDF4	8.303882e-01
13820	SDHA	5.051185e-01
13821	SDHAF2	2.251251e-01
13822	SDHB	5.247431e-01
13823	SDHC	1
13824	SDHD	1
13825	SDK1	9.997702e-01
13826	SDK2	5.623661e-01
13827	SDPR	8.285831e-01
13828	SDR16C5	4.289841e-01
13829	SDR39U1	4.428924e-01
13830	SDR42E1	6.371983e-01
13831	SDR9C7	4.897921e-01
13832	SDS	1
13833	SDSL	1
13834	SEBOX	6.419291e-01
13835	SEC11A	1
13836	SEC11C	1
13837	SEC13	2.405713e-01
13838	SEC14L1	4.559346e-01
13839	SEC14L2	5.706502e-01
13840	SEC14L3	8.014697e-01
13841	SEC14L4	7.637505e-01
13842	SEC14L5	8.849245e-01
Done

Running MutSig 2:
Scatter job 153: processing genes 13752 - 13842
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SCN1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.503333e-02	ci left: 7.012988e-01	ci right 7.191786e-01	k: 7103	n:10000
Cons ci ratio: 3.244499e-02	ci left: 5.836966e-01	ci right 6.030490e-01	k: 5934	n:10000
KS ci ratio: 3.460197e-02	ci left: 5.522089e-01	ci right 5.717549e-01	k: 5620	n:10000
SCN1A   10000 perm   3 sec   (3585 perm/sec)   p_kst 5.620000e-01   p_cons 5.934000e-01   p_joint 7.103000e-01

Outputting figure to mutsig2_images.part000000000153/SCN1A.32_6134_10000_0.562_0.5934_0.7103.png
                gene_name: SCN1A
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 3 percent done.
SCN7A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.394432e-01	ci left: 2.296967e-02	ci right 2.931046e-02	k: 260	n:10000
Cons ci ratio: 3.509652e-02	ci left: 5.451948e-01	ci right 5.647731e-01	k: 5550	n:10000
KS ci ratio: 5.132010e-01	ci left: 4.319899e-03	ci right 7.378784e-03	k: 57	n:10000
SCN7A   10000 perm   2 sec   (4092 perm/sec)   p_kst 5.700000e-03   p_cons 5.550000e-01   p_joint 2.600000e-02

Joint ci ratio: 1.574756e-01	ci left: 2.767935e-02	ci right 3.245857e-02	k: 600	n:20000
Cons ci ratio: 2.517223e-02	ci left: 5.410709e-01	ci right 5.549151e-01	k: 10960	n:20000
KS ci ratio: 3.727189e-01	ci left: 4.477090e-03	ci right 6.570623e-03	k: 109	n:20000
SCN7A   20000 perm   5 sec   (3758 perm/sec)   p_kst 5.450000e-03   p_cons 5.480000e-01   p_joint 3.000000e-02

Joint ci ratio: 1.500838e-01	ci left: 2.056252e-02	ci right 2.393088e-02	k: 666	n:30000
Cons ci ratio: 2.022099e-02	ci left: 5.504226e-01	ci right 5.616999e-01	k: 16682	n:30000
KS ci ratio: 3.081041e-01	ci left: 4.540680e-03	ci right 6.223961e-03	k: 160	n:30000
SCN7A   30000 perm   8 sec   (3635 perm/sec)   p_kst 5.333333e-03   p_cons 5.560667e-01   p_joint 2.220000e-02

Joint ci ratio: 1.217774e-01	ci left: 2.371035e-02	ci right 2.680909e-02	k: 1009	n:40000
Cons ci ratio: 1.751710e-02	ci left: 5.510394e-01	ci right 5.608025e-01	k: 22237	n:40000
KS ci ratio: 2.522715e-01	ci left: 5.243302e-03	ci right 6.779744e-03	k: 239	n:40000
SCN7A   40000 perm   11 sec   (3550 perm/sec)   p_kst 5.975000e-03   p_cons 5.559250e-01   p_joint 2.522500e-02

Joint ci ratio: 1.168840e-01	ci left: 2.071267e-02	ci right 2.330324e-02	k: 1099	n:50000
Cons ci ratio: 1.569026e-02	ci left: 5.508511e-01	ci right 5.595825e-01	k: 27761	n:50000
KS ci ratio: 2.271677e-01	ci left: 5.247535e-03	ci right 6.610788e-03	k: 295	n:50000
SCN7A   50000 perm   14 sec   (3485 perm/sec)   p_kst 5.900000e-03   p_cons 5.552200e-01   p_joint 2.198000e-02

Joint ci ratio: 1.153009e-01	ci left: 1.780921e-02	ci right 2.000434e-02	k: 1133	n:60000
Cons ci ratio: 1.477008e-02	ci left: 5.360019e-01	ci right 5.439943e-01	k: 32400	n:60000
KS ci ratio: 2.080242e-01	ci left: 5.271264e-03	ci right 6.510597e-03	k: 352	n:60000
SCN7A   60000 perm   18 sec   (3424 perm/sec)   p_kst 5.866667e-03   p_cons 5.400000e-01   p_joint 1.888333e-02

Joint ci ratio: 1.221457e-01	ci left: 1.361362e-02	ci right 1.539838e-02	k: 1014	n:70000
Cons ci ratio: 1.386751e-02	ci left: 5.293242e-01	ci right 5.367302e-01	k: 37312	n:70000
KS ci ratio: 1.925540e-01	ci left: 5.318878e-03	ci right 6.465519e-03	k: 411	n:70000
SCN7A   70000 perm   21 sec   (3373 perm/sec)   p_kst 5.871429e-03   p_cons 5.330286e-01   p_joint 1.448571e-02

Joint ci ratio: 1.205845e-01	ci left: 1.225077e-02	ci right 1.383484e-02	k: 1042	n:80000
Cons ci ratio: 1.296353e-02	ci left: 5.298855e-01	ci right 5.368120e-01	k: 42668	n:80000
KS ci ratio: 1.781974e-01	ci left: 5.476582e-03	ci right 6.559712e-03	k: 480	n:80000
SCN7A   80000 perm   24 sec   (3327 perm/sec)   p_kst 6.000000e-03   p_cons 5.333500e-01   p_joint 1.302500e-02

Joint ci ratio: 1.219209e-01	ci left: 1.066278e-02	ci right 1.205787e-02	k: 1021	n:90000
Cons ci ratio: 1.219912e-02	ci left: 5.310234e-01	ci right 5.375522e-01	k: 48086	n:90000
KS ci ratio: 1.678697e-01	ci left: 5.516526e-03	ci right 6.537929e-03	k: 541	n:90000
SCN7A   90000 perm   27 sec   (3279 perm/sec)   p_kst 6.011111e-03   p_cons 5.342889e-01   p_joint 1.134444e-02

Joint ci ratio: 9.824712e-02	ci left: 1.489956e-02	ci right 1.644872e-02	k: 1566	n:100000
Cons ci ratio: 1.157309e-02	ci left: 5.311924e-01	ci right 5.373856e-01	k: 53429	n:100000
KS ci ratio: 1.581002e-01	ci left: 5.626773e-03	ci right 6.602207e-03	k: 610	n:100000
SCN7A   100000 perm   31 sec   (3238 perm/sec)   p_kst 6.100000e-03   p_cons 5.342900e-01   p_joint 1.566000e-02

Joint ci ratio: 1.057939e-01	ci left: 1.167469e-02	ci right 1.298757e-02	k: 1355	n:110000
Cons ci ratio: 1.103430e-02	ci left: 5.313468e-01	ci right 5.372514e-01	k: 58773	n:110000
KS ci ratio: 1.520109e-01	ci left: 5.552145e-03	ci right 6.474193e-03	k: 660	n:110000
SCN7A   110000 perm   34 sec   (3194 perm/sec)   p_kst 6.000000e-03   p_cons 5.343000e-01   p_joint 1.231818e-02

Joint ci ratio: 1.016830e-01	ci left: 1.161090e-02	ci right 1.286284e-02	k: 1467	n:120000
Cons ci ratio: 1.054705e-02	ci left: 5.322980e-01	ci right 5.379503e-01	k: 64215	n:120000
KS ci ratio: 1.451441e-01	ci left: 5.602989e-03	ci right 6.487805e-03	k: 724	n:120000
SCN7A   120000 perm   38 sec   (3153 perm/sec)   p_kst 6.033333e-03   p_cons 5.351250e-01   p_joint 1.222500e-02

Joint ci ratio: 1.079663e-01	ci left: 9.496179e-03	ci right 1.058738e-02	k: 1304	n:130000
Cons ci ratio: 1.012487e-02	ci left: 5.328227e-01	ci right 5.382526e-01	k: 69620	n:130000
KS ci ratio: 1.391310e-01	ci left: 5.646803e-03	ci right 6.498532e-03	k: 788	n:130000
SCN7A   130000 perm   42 sec   (3110 perm/sec)   p_kst 6.061538e-03   p_cons 5.355385e-01   p_joint 1.003077e-02

Joint ci ratio: 9.413097e-02	ci left: 1.165941e-02	ci right 1.281806e-02	k: 1712	n:140000
Cons ci ratio: 9.768542e-03	ci left: 5.323116e-01	ci right 5.375441e-01	k: 74890	n:140000
KS ci ratio: 1.344440e-01	ci left: 5.629770e-03	ci right 6.448035e-03	k: 844	n:140000
SCN7A   140000 perm   46 sec   (3072 perm/sec)   p_kst 6.028571e-03   p_cons 5.349286e-01   p_joint 1.222857e-02

Joint ci ratio: 8.626211e-02	ci left: 1.299385e-02	ci right 1.417173e-02	k: 2036	n:150000
Cons ci ratio: 9.441398e-03	ci left: 5.321852e-01	ci right 5.372402e-01	k: 80207	n:150000
KS ci ratio: 1.299111e-01	ci left: 5.641229e-03	ci right 6.431382e-03	k: 904	n:150000
SCN7A   150000 perm   49 sec   (3034 perm/sec)   p_kst 6.026667e-03   p_cons 5.347133e-01   p_joint 1.357333e-02

Joint ci ratio: 9.048582e-02	ci left: 1.106885e-02	ci right 1.212396e-02	k: 1854	n:160000
Cons ci ratio: 9.135990e-03	ci left: 5.325711e-01	ci right 5.374652e-01	k: 85603	n:160000
KS ci ratio: 1.254161e-01	ci left: 5.687989e-03	ci right 6.455075e-03	k: 970	n:160000
SCN7A   160000 perm   54 sec   (2965 perm/sec)   p_kst 6.062500e-03   p_cons 5.350187e-01   p_joint 1.158750e-02

Joint ci ratio: 8.798621e-02	ci left: 1.103310e-02	ci right 1.205425e-02	k: 1961	n:170000
Cons ci ratio: 8.858731e-03	ci left: 5.328962e-01	ci right 5.376438e-01	k: 90996	n:170000
KS ci ratio: 1.224312e-01	ci left: 5.626990e-03	ci right 6.366480e-03	k: 1018	n:170000
SCN7A   170000 perm   58 sec   (2935 perm/sec)   p_kst 5.988235e-03   p_cons 5.352706e-01   p_joint 1.153529e-02

Joint ci ratio: 8.631821e-02	ci left: 1.083856e-02	ci right 1.182172e-02	k: 2038	n:180000
Cons ci ratio: 8.610653e-03	ci left: 5.328759e-01	ci right 5.374896e-01	k: 96333	n:180000
KS ci ratio: 1.192568e-01	ci left: 5.610696e-03	ci right 6.327578e-03	k: 1073	n:180000
SCN7A   180000 perm   62 sec   (2902 perm/sec)   p_kst 5.961111e-03   p_cons 5.351833e-01   p_joint 1.132222e-02

Joint ci ratio: 9.049575e-02	ci left: 9.336193e-03	ci right 1.022623e-02	k: 1857	n:190000
Cons ci ratio: 8.379653e-03	ci left: 5.330174e-01	ci right 5.375079e-01	k: 101700	n:190000
KS ci ratio: 1.159048e-01	ci left: 5.637228e-03	ci right 6.335868e-03	k: 1136	n:190000
SCN7A   190000 perm   66 sec   (2872 perm/sec)   p_kst 5.978947e-03   p_cons 5.352632e-01   p_joint 9.773684e-03

Joint ci ratio: 7.026131e-02	ci left: 1.478625e-02	ci right 1.586786e-02	k: 3064	n:200000
Cons ci ratio: 7.864278e-03	ci left: 5.518433e-01	ci right 5.562052e-01	k: 110805	n:200000
KS ci ratio: 1.124908e-01	ci left: 5.695380e-03	ci right 6.379057e-03	k: 1206	n:200000
SCN7A   200000 perm   70 sec   (2843 perm/sec)   p_kst 6.030000e-03   p_cons 5.540250e-01   p_joint 1.532000e-02

Joint ci ratio: 6.679076e-02	ci left: 1.559879e-02	ci right 1.668129e-02	k: 3388	n:210000
Cons ci ratio: 7.676767e-03	ci left: 5.517661e-01	ci right 5.560229e-01	k: 116318	n:210000
KS ci ratio: 1.092756e-01	ci left: 5.757530e-03	ci right 6.427642e-03	k: 1278	n:210000
SCN7A   210000 perm   75 sec   (2815 perm/sec)   p_kst 6.085714e-03   p_cons 5.538952e-01   p_joint 1.613333e-02

Joint ci ratio: 6.583597e-02	ci left: 1.533669e-02	ci right 1.638521e-02	k: 3488	n:220000
Cons ci ratio: 7.499782e-03	ci left: 5.518472e-01	ci right 5.560060e-01	k: 121864	n:220000
KS ci ratio: 1.072436e-01	ci left: 5.712513e-03	ci right 6.364241e-03	k: 1327	n:220000
SCN7A   220000 perm   79 sec   (2786 perm/sec)   p_kst 6.031818e-03   p_cons 5.539273e-01   p_joint 1.585455e-02

Joint ci ratio: 6.574433e-02	ci left: 1.472104e-02	ci right 1.572601e-02	k: 3500	n:230000
Cons ci ratio: 7.333274e-03	ci left: 5.520049e-01	ci right 5.560720e-01	k: 127429	n:230000
KS ci ratio: 1.051673e-01	ci left: 5.688453e-03	ci right 6.324093e-03	k: 1380	n:230000
SCN7A   230000 perm   83 sec   (2758 perm/sec)   p_kst 6.000000e-03   p_cons 5.540391e-01   p_joint 1.521739e-02

Joint ci ratio: 6.427276e-02	ci left: 1.477170e-02	ci right 1.575672e-02	k: 3662	n:240000
Cons ci ratio: 7.180229e-03	ci left: 5.519544e-01	ci right 5.559360e-01	k: 132947	n:240000
KS ci ratio: 1.028111e-01	ci left: 5.711168e-03	ci right 6.334185e-03	k: 1444	n:240000
SCN7A   240000 perm   88 sec   (2730 perm/sec)   p_kst 6.016667e-03   p_cons 5.539458e-01   p_joint 1.525833e-02

Joint ci ratio: 6.277920e-02	ci left: 1.487368e-02	ci right 1.584161e-02	k: 3838	n:250000
Cons ci ratio: 7.037236e-03	ci left: 5.518488e-01	ci right 5.557500e-01	k: 138450	n:250000
KS ci ratio: 1.007746e-01	ci left: 5.712713e-03	ci right 6.322824e-03	k: 1503	n:250000
SCN7A   250000 perm   93 sec   (2702 perm/sec)   p_kst 6.012000e-03   p_cons 5.538000e-01   p_joint 1.535200e-02

Joint ci ratio: 6.311584e-02	ci left: 1.415759e-02	ci right 1.508404e-02	k: 3800	n:260000
Cons ci ratio: 6.898861e-03	ci left: 5.520099e-01	ci right 5.558351e-01	k: 144020	n:260000
KS ci ratio: 9.882270e-02	ci left: 5.718004e-03	ci right 6.316165e-03	k: 1563	n:260000
SCN7A   260000 perm   97 sec   (2674 perm/sec)   p_kst 6.011538e-03   p_cons 5.539231e-01   p_joint 1.461538e-02

Outputting figure to mutsig2_images.part000000000153/SCN7A.16_5145_260000_0.0060115_0.55392_0.014615.png
                gene_name: SCN7A
               theta_stop: 0.099 
                    nperm: 260000 
                     p_ks: 0.0060 
        ci_ks_bounds_left: 0.0057 
       ci_ks_bounds_right: 0.0063 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.015 
     ci_joint_bounds_left: 0.014 
    ci_joint_bounds_right: 0.015 

Current progress: 5 percent done.
SCN10A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.644542e-02	ci left: 6.780094e-01	ci right 6.962815e-01	k: 6872	n:10000
Cons ci ratio: 1.315017e-02	ci left: 8.928248e-01	ci right 9.047417e-01	k: 8989	n:10000
KS ci ratio: 3.489098e-02	ci left: 5.481004e-01	ci right 5.676658e-01	k: 5579	n:10000
SCN10A   10000 perm   3 sec   (3283 perm/sec)   p_kst 5.579000e-01   p_cons 8.989000e-01   p_joint 6.872000e-01

Outputting figure to mutsig2_images.part000000000153/SCN10A.14_5979_10000_0.5579_0.8989_0.6872.png
                gene_name: SCN10A
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 8 percent done.
SCN2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.834860e-02	ci left: 8.126320e-01	ci right 8.277809e-01	k: 8203	n:10000
KS ci ratio: 1.013606e-02	ci left: 9.324734e-01	ci right 9.420699e-01	k: 9374	n:10000
SCN2A   10000 perm   3 sec   (3907 perm/sec)   p_kst 9.374000e-01   p_cons 8.203000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000153/SCN2A.14_6218_10000_0.9374_0.8203_1.png
                gene_name: SCN2A
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 11 percent done.
SCN11A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.854499e-02	ci left: 3.850022e-01	ci right 4.042592e-01	k: 3946	n:10000
Cons ci ratio: 9.901113e-02	ci left: 1.287509e-01	ci right 1.422622e-01	k: 1354	n:10000
KS ci ratio: 3.734125e-02	ci left: 5.143558e-01	ci right 5.340301e-01	k: 5242	n:10000
SCN11A   10000 perm   3 sec   (3931 perm/sec)   p_kst 5.242000e-01   p_cons 1.354000e-01   p_joint 3.946000e-01

Outputting figure to mutsig2_images.part000000000153/SCN11A.13_5480_10000_0.5242_0.1354_0.3946.png
                gene_name: SCN11A
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.40 

Current progress: 14 percent done.
SCN3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.005822e-02	ci left: 9.334051e-01	ci right 9.429377e-01	k: 9383	n:10000
Cons ci ratio: 3.748370e-02	ci left: 5.124546e-01	ci right 5.321324e-01	k: 5223	n:10000
KS ci ratio: 2.046065e-02	ci left: 7.777276e-01	ci right 7.939056e-01	k: 7859	n:10000
SCN3A   10000 perm   2 sec   (4288 perm/sec)   p_kst 7.859000e-01   p_cons 5.223000e-01   p_joint 9.383000e-01

Outputting figure to mutsig2_images.part000000000153/SCN3A.13_6203_10000_0.7859_0.5223_0.9383.png
                gene_name: SCN3A
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 16 percent done.
SCN4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.368349e-02	ci left: 5.654409e-01	ci right 5.849153e-01	k: 5752	n:10000
Cons ci ratio: 9.667188e-02	ci left: 1.343321e-01	ci right 1.480776e-01	k: 1411	n:10000
KS ci ratio: 7.649413e-03	ci left: 9.595321e-01	ci right 9.669949e-01	k: 9634	n:10000
SCN4A   10000 perm   2 sec   (4229 perm/sec)   p_kst 9.634000e-01   p_cons 1.411000e-01   p_joint 5.752000e-01

Outputting figure to mutsig2_images.part000000000153/SCN4A.10_5607_10000_0.9634_0.1411_0.5752.png
                gene_name: SCN4A
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.58 

Current progress: 19 percent done.
SCN5A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.842204e-02	ci left: 6.459913e-01	ci right 6.647181e-01	k: 6554	n:10000
Cons ci ratio: 5.877102e-02	ci left: 2.987602e-01	ci right 3.169519e-01	k: 3078	n:10000
KS ci ratio: 2.910462e-02	ci left: 6.351279e-01	ci right 6.539878e-01	k: 6446	n:10000
SCN5A   10000 perm   2 sec   (4110 perm/sec)   p_kst 6.446000e-01   p_cons 3.078000e-01   p_joint 6.554000e-01

Outputting figure to mutsig2_images.part000000000153/SCN5A.10_6255_10000_0.6446_0.3078_0.6554.png
                gene_name: SCN5A
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.66 

Current progress: 22 percent done.
SCN8A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.327139e-02	ci left: 7.306776e-01	ci right 7.479828e-01	k: 7394	n:10000
Cons ci ratio: 3.088809e-02	ci left: 6.072889e-01	ci right 6.264430e-01	k: 6169	n:10000
KS ci ratio: 3.194324e-02	ci left: 5.912235e-01	ci right 6.105177e-01	k: 6009	n:10000
SCN8A   10000 perm   2 sec   (4043 perm/sec)   p_kst 6.009000e-01   p_cons 6.169000e-01   p_joint 7.394000e-01

Outputting figure to mutsig2_images.part000000000153/SCN8A.8_6047_10000_0.6009_0.6169_0.7394.png
                gene_name: SCN8A
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 24 percent done.
SDK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.857837e-02	ci left: 8.088732e-01	ci right 8.241419e-01	k: 8166	n:10000
Cons ci ratio: 1.562101e-02	ci left: 8.561050e-01	ci right 8.696829e-01	k: 8630	n:10000
KS ci ratio: 3.075105e-02	ci left: 6.093982e-01	ci right 6.285324e-01	k: 6190	n:10000
SDK1   10000 perm   2 sec   (4172 perm/sec)   p_kst 6.190000e-01   p_cons 8.630000e-01   p_joint 8.166000e-01

Outputting figure to mutsig2_images.part000000000153/SDK1.8_6822_10000_0.619_0.863_0.8166.png
                gene_name: SDK1
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 27 percent done.
SDK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.914066e-02	ci left: 1.891452e-01	ci right 2.048317e-01	k: 1969	n:10000
Cons ci ratio: 5.359736e-02	ci left: 3.390568e-01	ci right 3.578316e-01	k: 3484	n:10000
KS ci ratio: 1.497797e-01	ci left: 5.928045e-02	ci right 6.897537e-02	k: 640	n:10000
SDK2   10000 perm   2 sec   (4214 perm/sec)   p_kst 6.400000e-02   p_cons 3.484000e-01   p_joint 1.969000e-01

Joint ci ratio: 8.237831e-02	ci left: 9.749509e-02	ci right 1.059211e-01	k: 2033	n:20000
Cons ci ratio: 3.779075e-02	ci left: 3.431380e-01	ci right 3.564057e-01	k: 6995	n:20000
KS ci ratio: 1.075349e-01	ci left: 5.894035e-02	ci right 6.568759e-02	k: 1245	n:20000
SDK2   20000 perm   5 sec   (3843 perm/sec)   p_kst 6.225000e-02   p_cons 3.497500e-01   p_joint 1.016500e-01

Joint ci ratio: 6.782018e-02	ci left: 9.679156e-02	ci right 1.036194e-01	k: 3005	n:30000
Cons ci ratio: 3.126734e-02	ci left: 3.383907e-01	ci right 3.491729e-01	k: 10313	n:30000
KS ci ratio: 8.713328e-02	ci left: 6.043968e-02	ci right 6.597862e-02	k: 1895	n:30000
SDK2   30000 perm   8 sec   (3702 perm/sec)   p_kst 6.316667e-02   p_cons 3.437667e-01   p_joint 1.001667e-01

Outputting figure to mutsig2_images.part000000000153/SDK2.8_6699_30000_0.063167_0.34377_0.10017.png
                gene_name: SDK2
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.063 
        ci_ks_bounds_left: 0.060 
       ci_ks_bounds_right: 0.066 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.097 
    ci_joint_bounds_right: 0.10 

Current progress: 30 percent done.
SCRIB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.767943e-02	ci left: 5.098532e-01	ci right 5.295353e-01	k: 5197	n:10000
Cons ci ratio: 2.191363e-02	ci left: 7.534265e-01	ci right 7.702207e-01	k: 7619	n:10000
KS ci ratio: 5.718257e-02	ci left: 3.104639e-01	ci right 3.288413e-01	k: 3196	n:10000
SCRIB   10000 perm   2 sec   (4616 perm/sec)   p_kst 3.196000e-01   p_cons 7.619000e-01   p_joint 5.197000e-01

Outputting figure to mutsig2_images.part000000000153/SCRIB.7_5116_10000_0.3196_0.7619_0.5197.png
                gene_name: SCRIB
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 32 percent done.
SCHIP1
Processing conservation and coverage...
Processing mutations... 
Skipping 2 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.618968e-02	ci left: 5.299709e-01	ci right 5.496059e-01	k: 5398	n:10000
Cons ci ratio: 3.895191e-02	ci left: 4.932507e-01	ci right 5.129475e-01	k: 5031	n:10000
KS ci ratio: 4.922212e-02	ci left: 3.784330e-01	ci right 3.976323e-01	k: 3880	n:10000
SCHIP1   10000 perm   2 sec   (6082 perm/sec)   p_kst 3.880000e-01   p_cons 5.031000e-01   p_joint 5.398000e-01

Outputting figure to mutsig2_images.part000000000153/SCHIP1.4_1496_10000_0.388_0.5031_0.5398.png
                gene_name: SCHIP1
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 35 percent done.
SCN9A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.759606e-02	ci left: 6.592760e-01	ci right 6.778257e-01	k: 6686	n:10000
Cons ci ratio: 3.656271e-02	ci left: 5.248649e-01	ci right 5.445149e-01	k: 5347	n:10000
KS ci ratio: 3.604427e-02	ci left: 5.319735e-01	ci right 5.516021e-01	k: 5418	n:10000
SCN9A   10000 perm   2 sec   (4589 perm/sec)   p_kst 5.418000e-01   p_cons 5.347000e-01   p_joint 6.686000e-01

Outputting figure to mutsig2_images.part000000000153/SCN9A.6_6038_10000_0.5418_0.5347_0.6686.png
                gene_name: SCN9A
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 38 percent done.
SDCCAG8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.280349e-01	ci left: 2.542102e-02	ci right 3.205731e-02	k: 286	n:10000
Cons ci ratio: 9.930804e-02	ci left: 1.280657e-01	ci right 1.415478e-01	k: 1347	n:10000
KS ci ratio: 2.543456e-01	ci left: 2.024526e-02	ci right 2.623692e-02	k: 231	n:10000
SDCCAG8   10000 perm   2 sec   (5431 perm/sec)   p_kst 2.310000e-02   p_cons 1.347000e-01   p_joint 2.860000e-02

Joint ci ratio: 1.492271e-01	ci left: 3.085647e-02	ci right 3.588039e-02	k: 666	n:20000
Cons ci ratio: 7.173704e-02	ci left: 1.252205e-01	ci right 1.345874e-01	k: 2597	n:20000
KS ci ratio: 1.820756e-01	ci left: 2.058483e-02	ci right 2.475554e-02	k: 452	n:20000
SDCCAG8   20000 perm   4 sec   (4883 perm/sec)   p_kst 2.260000e-02   p_cons 1.298500e-01   p_joint 3.330000e-02

Joint ci ratio: 1.492846e-01	ci left: 2.078729e-02	ci right 2.417273e-02	k: 673	n:30000
Cons ci ratio: 5.706801e-02	ci left: 1.320080e-01	ci right 1.397959e-01	k: 4076	n:30000
KS ci ratio: 1.456769e-01	ci left: 2.184756e-02	ci right 2.531222e-02	k: 706	n:30000
SDCCAG8   30000 perm   6 sec   (4670 perm/sec)   p_kst 2.353333e-02   p_cons 1.358667e-01   p_joint 2.243333e-02

Joint ci ratio: 1.085900e-01	ci left: 2.983424e-02	ci right 3.328421e-02	k: 1261	n:40000
Cons ci ratio: 4.979951e-02	ci left: 1.307748e-01	ci right 1.374785e-01	k: 5364	n:40000
KS ci ratio: 1.274588e-01	ci left: 2.162584e-02	ci right 2.459395e-02	k: 923	n:40000
SDCCAG8   40000 perm   9 sec   (4532 perm/sec)   p_kst 2.307500e-02   p_cons 1.341000e-01   p_joint 3.152500e-02

Joint ci ratio: 1.133020e-01	ci left: 2.205379e-02	ci right 2.472194e-02	k: 1168	n:50000
Cons ci ratio: 4.337014e-02	ci left: 1.373857e-01	ci right 1.434961e-01	k: 7021	n:50000
KS ci ratio: 1.137010e-01	ci left: 2.189823e-02	ci right 2.455752e-02	k: 1160	n:50000
SDCCAG8   50000 perm   11 sec   (4423 perm/sec)   p_kst 2.320000e-02   p_cons 1.404200e-01   p_joint 2.336000e-02

Joint ci ratio: 1.226737e-01	ci left: 1.570590e-02	ci right 1.777456e-02	k: 1003	n:60000
Cons ci ratio: 3.960889e-02	ci left: 1.375467e-01	ci right 1.431214e-01	k: 8419	n:60000
KS ci ratio: 1.041856e-01	ci left: 2.184781e-02	ci right 2.426529e-02	k: 1382	n:60000
SDCCAG8   60000 perm   14 sec   (4329 perm/sec)   p_kst 2.303333e-02   p_cons 1.403167e-01   p_joint 1.671667e-02

Joint ci ratio: 1.151503e-01	ci left: 1.534714e-02	ci right 1.723612e-02	k: 1139	n:70000
Cons ci ratio: 3.670624e-02	ci left: 1.375224e-01	ci right 1.426789e-01	k: 9806	n:70000
KS ci ratio: 9.784735e-02	ci left: 2.131645e-02	ci right 2.352338e-02	k: 1568	n:70000
SDCCAG8   70000 perm   16 sec   (4246 perm/sec)   p_kst 2.240000e-02   p_cons 1.400857e-01   p_joint 1.627143e-02

Joint ci ratio: 9.300131e-02	ci left: 2.071369e-02	ci right 2.274620e-02	k: 1737	n:80000
Cons ci ratio: 3.433200e-02	ci left: 1.377141e-01	ci right 1.425371e-01	k: 11209	n:80000
KS ci ratio: 9.232481e-02	ci left: 2.101910e-02	ci right 2.306576e-02	k: 1762	n:80000
SDCCAG8   80000 perm   19 sec   (4167 perm/sec)   p_kst 2.202500e-02   p_cons 1.401125e-01   p_joint 2.171250e-02

Outputting figure to mutsig2_images.part000000000153/SDCCAG8.6_2214_80000_0.022025_0.14011_0.021712.png
                gene_name: SDCCAG8
               theta_stop: 0.093 
                    nperm: 80000 
                     p_ks: 0.022 
        ci_ks_bounds_left: 0.021 
       ci_ks_bounds_right: 0.023 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.022 
     ci_joint_bounds_left: 0.021 
    ci_joint_bounds_right: 0.023 

Current progress: 41 percent done.
SCUBE3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.234819e-02	ci left: 7.461435e-01	ci right 7.631079e-01	k: 7547	n:10000
Cons ci ratio: 4.669845e-03	ci left: 9.836084e-01	ci right 9.883022e-01	k: 9861	n:10000
KS ci ratio: 3.829530e-02	ci left: 5.017506e-01	ci right 5.214426e-01	k: 5116	n:10000
SCUBE3   10000 perm   2 sec   (4980 perm/sec)   p_kst 5.116000e-01   p_cons 9.861000e-01   p_joint 7.547000e-01

Outputting figure to mutsig2_images.part000000000153/SCUBE3.5_3070_10000_0.5116_0.9861_0.7547.png
                gene_name: SCUBE3
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.76 

Current progress: 43 percent done.
SCYL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.203653e-02	ci left: 9.082308e-01	ci right 9.193268e-01	k: 9139	n:10000
KS ci ratio: 2.921903e-02	ci left: 6.333178e-01	ci right 6.521989e-01	k: 6428	n:10000
SCYL2   10000 perm   2 sec   (5088 perm/sec)   p_kst 6.428000e-01   p_cons 9.139000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000153/SCYL2.5_2858_10000_0.6428_0.9139_1.png
                gene_name: SCYL2
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 46 percent done.
SCML2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.313783e-02	ci left: 4.424102e-01	ci right 4.620177e-01	k: 4522	n:10000
Cons ci ratio: 3.076409e-02	ci left: 6.091973e-01	ci right 6.283334e-01	k: 6188	n:10000
KS ci ratio: 5.397717e-02	ci left: 3.358779e-01	ci right 3.546124e-01	k: 3452	n:10000
SCML2   10000 perm   2 sec   (5558 perm/sec)   p_kst 3.452000e-01   p_cons 6.188000e-01   p_joint 4.522000e-01

Outputting figure to mutsig2_images.part000000000153/SCML2.4_2159_10000_0.3452_0.6188_0.4522.png
                gene_name: SCML2
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 49 percent done.
SCLT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.228391e-02	ci left: 5.861050e-01	ci right 6.054392e-01	k: 5958	n:10000
Cons ci ratio: 2.627337e-02	ci left: 6.808309e-01	ci right 6.990583e-01	k: 6900	n:10000
KS ci ratio: 5.128351e-02	ci left: 3.592335e-01	ci right 3.782430e-01	k: 3687	n:10000
SCLT1   10000 perm   2 sec   (5792 perm/sec)   p_kst 3.687000e-01   p_cons 6.900000e-01   p_joint 5.958000e-01

Outputting figure to mutsig2_images.part000000000153/SCLT1.3_2151_10000_0.3687_0.69_0.5958.png
                gene_name: SCLT1
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 51 percent done.
SCML4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.574653e-02	ci left: 4.135897e-01	ci right 4.330550e-01	k: 4233	n:10000
Cons ci ratio: 5.612182e-02	ci left: 3.186009e-01	ci right 3.370994e-01	k: 3278	n:10000
KS ci ratio: 5.319849e-02	ci left: 3.424348e-01	ci right 3.612516e-01	k: 3518	n:10000
SCML4   10000 perm   2 sec   (6282 perm/sec)   p_kst 3.518000e-01   p_cons 3.278000e-01   p_joint 4.233000e-01

Outputting figure to mutsig2_images.part000000000153/SCML4.3_1273_10000_0.3518_0.3278_0.4233.png
                gene_name: SCML4
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 54 percent done.
SCN3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.004187e-02	ci left: 4.794567e-01	ci right 4.991495e-01	k: 4893	n:10000
Cons ci ratio: 7.243911e-02	ci left: 2.182281e-01	ci right 2.347315e-01	k: 2264	n:10000
KS ci ratio: 4.628462e-02	ci left: 4.079093e-01	ci right 4.273387e-01	k: 4176	n:10000
SCN3B   10000 perm   2 sec   (6513 perm/sec)   p_kst 4.176000e-01   p_cons 2.264000e-01   p_joint 4.893000e-01

Outputting figure to mutsig2_images.part000000000153/SCN3B.3_668_10000_0.4176_0.2264_0.4893.png
                gene_name: SCN3B
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 57 percent done.
SCNN1G
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.100581e-02	ci left: 6.054810e-01	ci right 6.246520e-01	k: 6151	n:10000
Cons ci ratio: 5.419274e-02	ci left: 3.340900e-01	ci right 3.528013e-01	k: 3434	n:10000
KS ci ratio: 1.145409e-02	ci left: 9.159518e-01	ci right 9.266012e-01	k: 9214	n:10000
SCNN1G   10000 perm   2 sec   (5770 perm/sec)   p_kst 9.214000e-01   p_cons 3.434000e-01   p_joint 6.151000e-01

Outputting figure to mutsig2_images.part000000000153/SCNN1G.3_1998_10000_0.9214_0.3434_0.6151.png
                gene_name: SCNN1G
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.62 

Current progress: 59 percent done.
SCUBE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.105377e-02	ci left: 2.829019e-01	ci right 3.008195e-01	k: 2918	n:10000
Cons ci ratio: 6.592598e-02	ci left: 2.525117e-01	ci right 2.698276e-01	k: 2611	n:10000
KS ci ratio: 5.699905e-02	ci left: 3.118529e-01	ci right 3.302514e-01	k: 3210	n:10000
SCUBE1   10000 perm   2 sec   (5495 perm/sec)   p_kst 3.210000e-01   p_cons 2.611000e-01   p_joint 2.918000e-01

Outputting figure to mutsig2_images.part000000000153/SCUBE1.3_3055_10000_0.321_0.2611_0.2918.png
                gene_name: SCUBE1
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 62 percent done.
SDCCAG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.974422e-02	ci left: 3.734575e-01	ci right 3.926107e-01	k: 3830	n:10000
Cons ci ratio: 2.451724e-02	ci left: 7.098755e-01	ci right 7.275970e-01	k: 7188	n:10000
KS ci ratio: 7.152117e-02	ci left: 2.226698e-01	ci right 2.392872e-01	k: 2309	n:10000
SDCCAG1   10000 perm   2 sec   (5389 perm/sec)   p_kst 2.309000e-01   p_cons 7.188000e-01   p_joint 3.830000e-01

Outputting figure to mutsig2_images.part000000000153/SDCCAG1.3_3363_10000_0.2309_0.7188_0.383.png
                gene_name: SDCCAG1
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 65 percent done.
SDHA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.866511e-02	ci left: 8.074513e-01	ci right 8.227647e-01	k: 8152	n:10000
Cons ci ratio: 5.031728e-02	ci left: 3.680851e-01	ci right 3.871862e-01	k: 3776	n:10000
KS ci ratio: 2.217922e-02	ci left: 7.489754e-01	ci right 7.658744e-01	k: 7575	n:10000
SDHA   10000 perm   2 sec   (5900 perm/sec)   p_kst 7.575000e-01   p_cons 3.776000e-01   p_joint 8.152000e-01

Outputting figure to mutsig2_images.part000000000153/SDHA.3_2055_10000_0.7575_0.3776_0.8152.png
                gene_name: SDHA
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 68 percent done.
SEC14L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.096528e-02	ci left: 2.834963e-01	ci right 3.014247e-01	k: 2924	n:10000
KS ci ratio: 7.385874e-03	ci left: 9.620496e-01	ci right 9.692759e-01	k: 9658	n:10000
SEC14L1   10000 perm   2 sec   (5902 perm/sec)   p_kst 9.658000e-01   p_cons 2.924000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000153/SEC14L1.3_2228_10000_0.9658_0.2924_1.png
                gene_name: SEC14L1
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
SCGB2A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.087943e-02	ci left: 7.707371e-01	ci right 7.871001e-01	k: 7790	n:10000
Cons ci ratio: 3.632097e-02	ci left: 5.281686e-01	ci right 5.478092e-01	k: 5380	n:10000
KS ci ratio: 2.601579e-02	ci left: 6.850639e-01	ci right 7.032228e-01	k: 6942	n:10000
SCGB2A1   10000 perm   1 sec   (7027 perm/sec)   p_kst 6.942000e-01   p_cons 5.380000e-01   p_joint 7.790000e-01

Outputting figure to mutsig2_images.part000000000153/SCGB2A1.2_300_10000_0.6942_0.538_0.779.png
                gene_name: SCGB2A1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 73 percent done.
SCNN1D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.383810e-03	ci left: 9.908300e-01	ci right 9.942737e-01	k: 9927	n:10000
Cons ci ratio: 3.824171e-02	ci left: 5.024508e-01	ci right 5.221421e-01	k: 5123	n:10000
KS ci ratio: 3.597175e-02	ci left: 5.329749e-01	ci right 5.526002e-01	k: 5428	n:10000
SCNN1D   10000 perm   2 sec   (6025 perm/sec)   p_kst 5.428000e-01   p_cons 5.123000e-01   p_joint 9.927000e-01

Outputting figure to mutsig2_images.part000000000153/SCNN1D.2_2175_10000_0.5428_0.5123_0.9927.png
                gene_name: SCNN1D
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 76 percent done.
SCRN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.906652e-02	ci left: 8.008515e-01	ci right 8.163683e-01	k: 8087	n:10000
Cons ci ratio: 1.819913e-02	ci left: 8.150708e-01	ci right 8.301408e-01	k: 8227	n:10000
KS ci ratio: 3.209660e-02	ci left: 5.889150e-01	ci right 6.082275e-01	k: 5986	n:10000
SCRN1   10000 perm   2 sec   (6404 perm/sec)   p_kst 5.986000e-01   p_cons 8.227000e-01   p_joint 8.087000e-01

Outputting figure to mutsig2_images.part000000000153/SCRN1.2_1337_10000_0.5986_0.8227_0.8087.png
                gene_name: SCRN1
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 78 percent done.
SCUBE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.692071e-02	ci left: 3.124482e-01	ci right 3.308558e-01	k: 3216	n:10000
KS ci ratio: 1.190619e-02	ci left: 9.099797e-01	ci right 9.209768e-01	k: 9156	n:10000
SCUBE2   10000 perm   2 sec   (5630 perm/sec)   p_kst 9.156000e-01   p_cons 3.216000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000153/SCUBE2.2_3179_10000_0.9156_0.3216_1.png
                gene_name: SCUBE2
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
SDC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.301904e-02	ci left: 1.746777e-01	ci right 1.899078e-01	k: 1822	n:10000
Cons ci ratio: 8.528745e-02	ci left: 1.669102e-01	ci right 1.818800e-01	k: 1743	n:10000
KS ci ratio: 5.520517e-02	ci left: 3.258476e-01	ci right 3.444485e-01	k: 3351	n:10000
SDC2   10000 perm   1 sec   (6854 perm/sec)   p_kst 3.351000e-01   p_cons 1.743000e-01   p_joint 1.822000e-01

Outputting figure to mutsig2_images.part000000000153/SDC2.2_626_10000_0.3351_0.1743_0.1822.png
                gene_name: SDC2
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.19 

Current progress: 84 percent done.
SDC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.999634e-03	ci left: 9.740817e-01	ci right 9.800359e-01	k: 9772	n:10000
Cons ci ratio: 1.272679e-02	ci left: 8.987765e-01	ci right 9.103866e-01	k: 9047	n:10000
KS ci ratio: 4.414416e-02	ci left: 4.310375e-01	ci right 4.505970e-01	k: 4408	n:10000
SDC3   10000 perm   1 sec   (6688 perm/sec)   p_kst 4.408000e-01   p_cons 9.047000e-01   p_joint 9.772000e-01

Outputting figure to mutsig2_images.part000000000153/SDC3.2_1349_10000_0.4408_0.9047_0.9772.png
                gene_name: SDC3
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 86 percent done.
SDHB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.753630e-02	ci left: 5.117542e-01	ci right 5.314332e-01	k: 5216	n:10000
Cons ci ratio: 2.046673e-02	ci left: 7.776263e-01	ci right 7.938069e-01	k: 7858	n:10000
KS ci ratio: 5.490924e-02	ci left: 3.282306e-01	ci right 3.468641e-01	k: 3375	n:10000
SDHB   10000 perm   2 sec   (6614 perm/sec)   p_kst 3.375000e-01   p_cons 7.858000e-01   p_joint 5.216000e-01

Outputting figure to mutsig2_images.part000000000153/SDHB.2_875_10000_0.3375_0.7858_0.5216.png
                gene_name: SDHB
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 89 percent done.
SDS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.490955e-03	ci left: 9.700550e-01	ci right 9.764653e-01	k: 9734	n:10000
KS ci ratio: 3.797060e-03	ci left: 9.887288e-01	ci right 9.925772e-01	k: 9908	n:10000
SDS   10000 perm   2 sec   (6649 perm/sec)   p_kst 9.908000e-01   p_cons 9.734000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000153/SDS.2_1015_10000_0.9908_0.9734_1.png
                gene_name: SDS
               theta_stop: 0.0065 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
SEC13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.231453e-01	ci left: 8.630741e-02	ci right 9.773155e-02	k: 919	n:10000
Cons ci ratio: 2.276270e-01	ci left: 2.551545e-02	ci right 3.216281e-02	k: 287	n:10000
KS ci ratio: 3.079670e-02	ci left: 6.086951e-01	ci right 6.278360e-01	k: 6183	n:10000
SEC13   10000 perm   2 sec   (6640 perm/sec)   p_kst 6.183000e-01   p_cons 2.870000e-02   p_joint 9.190000e-02

Joint ci ratio: 8.715687e-02	ci left: 8.783284e-02	ci right 9.588628e-02	k: 1836	n:20000
Cons ci ratio: 1.659200e-01	ci left: 2.489359e-02	ci right 2.944527e-02	k: 542	n:20000
KS ci ratio: 2.213442e-02	ci left: 6.038015e-01	ci right 6.173664e-01	k: 12212	n:20000
SEC13   20000 perm   3 sec   (5848 perm/sec)   p_kst 6.106000e-01   p_cons 2.710000e-02   p_joint 9.180000e-02

Joint ci ratio: 7.058003e-02	ci left: 8.993318e-02	ci right 9.654584e-02	k: 2796	n:30000
Cons ci ratio: 1.341676e-01	ci left: 2.580763e-02	ci right 2.955126e-02	k: 829	n:30000
KS ci ratio: 1.807679e-02	ci left: 6.049548e-01	ci right 6.160238e-01	k: 18315	n:30000
SEC13   30000 perm   5 sec   (5565 perm/sec)   p_kst 6.105000e-01   p_cons 2.763333e-02   p_joint 9.320000e-02

Joint ci ratio: 1.120764e-01	ci left: 2.800947e-02	ci right 3.135927e-02	k: 1186	n:40000
Cons ci ratio: 1.155858e-01	ci left: 2.633224e-02	ci right 2.958677e-02	k: 1117	n:40000
KS ci ratio: 1.565427e-02	ci left: 6.057259e-01	ci right 6.153080e-01	k: 24421	n:40000
SEC13   40000 perm   7 sec   (5381 perm/sec)   p_kst 6.105250e-01   p_cons 2.792500e-02   p_joint 2.965000e-02

Joint ci ratio: 9.920698e-02	ci left: 2.877582e-02	ci right 3.179904e-02	k: 1513	n:50000
Cons ci ratio: 1.023519e-01	ci left: 2.703942e-02	ci right 2.997566e-02	k: 1424	n:50000
KS ci ratio: 1.401125e-02	ci left: 6.059089e-01	ci right 6.144783e-01	k: 30510	n:50000
SEC13   50000 perm   10 sec   (5234 perm/sec)   p_kst 6.102000e-01   p_cons 2.848000e-02   p_joint 3.026000e-02

Joint ci ratio: 1.003179e-01	ci left: 2.357033e-02	ci right 2.607592e-02	k: 1488	n:60000
Cons ci ratio: 9.354691e-02	ci left: 2.710165e-02	ci right 2.977756e-02	k: 1705	n:60000
KS ci ratio: 1.277035e-02	ci left: 6.070354e-01	ci right 6.148539e-01	k: 36657	n:60000
SEC13   60000 perm   12 sec   (5110 perm/sec)   p_kst 6.109500e-01   p_cons 2.841667e-02   p_joint 2.480000e-02

Joint ci ratio: 9.255368e-02	ci left: 2.382808e-02	ci right 2.615438e-02	k: 1748	n:70000
Cons ci ratio: 8.684001e-02	ci left: 2.705602e-02	ci right 2.952615e-02	k: 1979	n:70000
KS ci ratio: 1.180585e-02	ci left: 6.080207e-01	ci right 6.152558e-01	k: 42815	n:70000
SEC13   70000 perm   14 sec   (4992 perm/sec)   p_kst 6.116429e-01   p_cons 2.827143e-02   p_joint 2.497143e-02

Outputting figure to mutsig2_images.part000000000153/SEC13.2_1005_70000_0.61164_0.028271_0.024971.png
                gene_name: SEC13
               theta_stop: 0.093 
                    nperm: 70000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.028 
      ci_cons_bounds_left: 0.027 
     ci_cons_bounds_right: 0.030 
                  p_joint: 0.025 
     ci_joint_bounds_left: 0.024 
    ci_joint_bounds_right: 0.026 

Current progress: 95 percent done.
SEC14L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.640239e-02	ci left: 6.787147e-01	ci right 6.969757e-01	k: 6879	n:10000
KS ci ratio: 3.978354e-03	ci left: 9.877409e-01	ci right 9.917661e-01	k: 9899	n:10000
SEC14L2   10000 perm   2 sec   (6441 perm/sec)   p_kst 9.899000e-01   p_cons 6.879000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000153/SEC14L2.2_1358_10000_0.9899_0.6879_1.png
                gene_name: SEC14L2
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
SEC14L5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.347477e-03	ci left: 9.525257e-01	ci right 9.606056e-01	k: 9567	n:10000
Cons ci ratio: 3.640140e-02	ci left: 5.270673e-01	ci right 5.467112e-01	k: 5369	n:10000
KS ci ratio: 4.415312e-02	ci left: 4.309378e-01	ci right 4.504967e-01	k: 4407	n:10000
SEC14L5   10000 perm   2 sec   (6038 perm/sec)   p_kst 4.407000e-01   p_cons 5.369000e-01   p_joint 9.567000e-01

Outputting figure to mutsig2_images.part000000000153/SEC14L5.2_2151_10000_0.4407_0.5369_0.9567.png
                gene_name: SEC14L5
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000153
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 153 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1646>
Subject: Job 8004533: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1646>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000154> was used as the working directory.
Started at Sun Nov 11 15:16:58 2012
Results reported at Sun Nov 11 15:54:40 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000154.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000154.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 154  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000154.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   2341.51 sec.
    Max Memory :      4645 MB
    Max Swap   :      7129 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
154
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 154
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 154: processing genes 13843 - 13932
Calculating significance of each gene.
Using projection method.
13843	SEC16A	1
13844	SEC16B	9.643487e-01
13845	SEC22A	2.097662e-01
13846	SEC22B	1
13847	SEC22C	1
13848	SEC23A	4.821838e-01
13849	SEC23B	7.372911e-01
13850	SEC23IP	9.571310e-01
13851	SEC24A	4.259648e-01
13852	SEC24B	8.114206e-01
13853	SEC24C	8.209956e-01
13854	SEC24D	9.309699e-01
13855	SEC31A	7.882892e-01
13856	SEC31B	9.011049e-01
13857	SEC61A1	6.698642e-01
13858	SEC61A2	7.740139e-01
13859	SEC61B	1
13860	SEC61G	1.659914e-02
13861	SEC62	1
13862	SEC63	7.010883e-01
13863	SECISBP2	9.678872e-01
13864	SECISBP2L	9.557659e-01
13865	SECTM1	1
13866	SEH1L	8.688346e-01
13867	SEL1L	4.282309e-01
13868	SEL1L2	1
13869	SEL1L3	9.390037e-01
13870	SELE	1.783742e-01
13871	SELENBP1	7.919290e-01
13872	SELK	1
13873	SELL	3.237922e-01
13874	SELM	1
13875	SELO	7.684809e-01
13876	SELP	3.969422e-01
13877	SELPLG	7.702761e-01
13878	SELS	1
13879	SELT	9.330777e-03
13880	SELV	1
13881	SEMA3A	5.103678e-01
13882	SEMA3B	1
13883	SEMA3C	9.403427e-01
13884	SEMA3D	9.155326e-01
13885	SEMA3E	8.890688e-01
13886	SEMA3F	6.834079e-01
13887	SEMA3G	5.665248e-01
13888	SEMA4A	9.487467e-01
13889	SEMA4B	9.450062e-01
13890	SEMA4C	8.127324e-01
13891	SEMA4D	9.648634e-01
13892	SEMA4F	6.082581e-01
13893	SEMA4G	1
13894	SEMA5A	9.890142e-01
13895	SEMA5B	9.701472e-01
13896	SEMA6A	1
13897	SEMA6B	8.747197e-01
13898	SEMA6C	2.021787e-01
13899	SEMA6D	6.544721e-02
13900	SEMA7A	1
13901	SEMG1	1
13902	SEMG2	4.978561e-02
13903	SENP1	3.770438e-01
13904	SENP2	1
13905	SENP3	7.302472e-01
13906	SENP5	1
13907	SENP6	9.642237e-01
13908	SENP7	6.267825e-01
13909	SENP8	1
13910	SEP15	1
13911	SEPHS1	2.179205e-01
13912	SEPHS2	1
13913	SEPN1	6.386792e-01
13914	SEPP1	1
13915	SEPSECS	3.545624e-01
13916	SEPT1	5.103616e-01
13917	SEPT10	2.660878e-01
13918	SEPT11	1
13919	SEPT12	6.662599e-02
13920	SEPT14	4.751451e-03
13921	SEPT2	2.572273e-01
13922	SEPT3	7.262650e-01
13923	SEPT4	1
13924	SEPT5	6.275895e-01
13925	SEPT6	7.313013e-01
13926	SEPT7	1.058300e-01
13927	SEPT8	5.708540e-01
13928	SEPT9	1
13929	SEPW1	1
13930	SEPX1	1
13931	SERAC1	8.204056e-01
13932	SERBP1	6.133297e-01
Done

Running MutSig 2:
Scatter job 154: processing genes 13843 - 13932
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SELP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.531823e-02	ci left: 4.181748e-01	ci right 4.376672e-01	k: 4279	n:10000
Cons ci ratio: 9.977908e-02	ci left: 1.269892e-01	ci right 1.404250e-01	k: 1336	n:10000
KS ci ratio: 1.482583e-02	ci left: 8.682565e-01	ci right 8.813243e-01	k: 8749	n:10000
SELP   10000 perm   2 sec   (4477 perm/sec)   p_kst 8.749000e-01   p_cons 1.336000e-01   p_joint 4.279000e-01

Outputting figure to mutsig2_images.part000000000154/SELP.11_2557_10000_0.8749_0.1336_0.4279.png
                gene_name: SELP
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 2 percent done.
SEMA5A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.775073e-02	ci left: 2.422288e-01	ci right 2.593166e-01	k: 2507	n:10000
Cons ci ratio: 4.541090e-02	ci left: 4.171780e-01	ci right 4.366646e-01	k: 4269	n:10000
KS ci ratio: 9.055796e-02	ci left: 1.506072e-01	ci right 1.649928e-01	k: 1577	n:10000
SEMA5A   10000 perm   2 sec   (4767 perm/sec)   p_kst 1.577000e-01   p_cons 4.269000e-01   p_joint 2.507000e-01

Outputting figure to mutsig2_images.part000000000154/SEMA5A.9_3309_10000_0.1577_0.4269_0.2507.png
                gene_name: SEMA5A
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 4 percent done.
SEMA6D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.819289e-02	ci left: 8.151724e-01	ci right 8.302391e-01	k: 8228	n:10000
Cons ci ratio: 1.562761e-02	ci left: 8.560029e-01	ci right 8.695850e-01	k: 8629	n:10000
KS ci ratio: 3.075105e-02	ci left: 6.093982e-01	ci right 6.285324e-01	k: 6190	n:10000
SEMA6D   10000 perm   2 sec   (4688 perm/sec)   p_kst 6.190000e-01   p_cons 8.629000e-01   p_joint 8.228000e-01

Outputting figure to mutsig2_images.part000000000154/SEMA6D.8_3337_10000_0.619_0.8629_0.8228.png
                gene_name: SEMA6D
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 6 percent done.
SEC23IP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.532587e-02	ci left: 2.050098e-01	ci right 2.211576e-01	k: 2130	n:10000
Cons ci ratio: 1.460418e-01	ci left: 6.227288e-02	ci right 7.218104e-02	k: 671	n:10000
KS ci ratio: 3.690201e-02	ci left: 5.202604e-01	ci right 5.399221e-01	k: 5301	n:10000
SEC23IP   10000 perm   2 sec   (4860 perm/sec)   p_kst 5.301000e-01   p_cons 6.710000e-02   p_joint 2.130000e-01

Joint ci ratio: 5.726817e-02	ci left: 1.843362e-01	ci right 1.952541e-01	k: 3795	n:20000
Cons ci ratio: 1.080911e-01	ci left: 5.835555e-02	ci right 6.507257e-02	k: 1233	n:20000
KS ci ratio: 2.594656e-02	ci left: 5.260062e-01	ci right 5.398842e-01	k: 10659	n:20000
SEC23IP   20000 perm   5 sec   (4206 perm/sec)   p_kst 5.329500e-01   p_cons 6.165000e-02   p_joint 1.897500e-01

Joint ci ratio: 4.235551e-02	ci left: 2.173738e-01	ci right 2.268134e-01	k: 6662	n:30000
Cons ci ratio: 8.879470e-02	ci left: 5.828508e-02	ci right 6.373365e-02	k: 1829	n:30000
KS ci ratio: 2.098587e-02	ci left: 5.320047e-01	ci right 5.433213e-01	k: 16130	n:30000
SEC23IP   30000 perm   7 sec   (4099 perm/sec)   p_kst 5.376667e-01   p_cons 6.096667e-02   p_joint 2.220667e-01

Outputting figure to mutsig2_images.part000000000154/SEC23IP.6_3075_30000_0.53767_0.060967_0.22207.png
                gene_name: SEC23IP
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.061 
      ci_cons_bounds_left: 0.058 
     ci_cons_bounds_right: 0.064 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 8 percent done.
SEL1L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.028594e-03	ci left: 9.452335e-01	ci right 9.539023e-01	k: 9497	n:10000
KS ci ratio: 1.380573e-02	ci left: 8.833963e-01	ci right 8.957757e-01	k: 8897	n:10000
SEL1L2   10000 perm   2 sec   (5412 perm/sec)   p_kst 8.897000e-01   p_cons 9.497000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000154/SEL1L2.6_2147_10000_0.8897_0.9497_1.png
                gene_name: SEL1L2
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 10 percent done.
SEMA4F
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.215927e-03	ci left: 9.538829e-01	ci right 9.618476e-01	k: 9580	n:10000
KS ci ratio: 2.706847e-02	ci left: 6.678349e-01	ci right 6.862618e-01	k: 6771	n:10000
SEMA4F   10000 perm   2 sec   (4887 perm/sec)   p_kst 6.771000e-01   p_cons 9.580000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000154/SEMA4F.6_2369_10000_0.6771_0.958_1.png
                gene_name: SEMA4F
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 12 percent done.
SEMA5B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.990708e-02	ci left: 2.907303e-01	ci right 3.087865e-01	k: 2997	n:10000
Cons ci ratio: 5.147127e-02	ci left: 3.575431e-01	ci right 3.765344e-01	k: 3670	n:10000
KS ci ratio: 1.008704e-01	ci left: 1.245431e-01	ci right 1.378726e-01	k: 1311	n:10000
SEMA5B   10000 perm   2 sec   (5241 perm/sec)   p_kst 1.311000e-01   p_cons 3.670000e-01   p_joint 2.997000e-01

Joint ci ratio: 5.387499e-02	ci left: 2.036301e-01	ci right 2.149546e-01	k: 4185	n:20000
Cons ci ratio: 3.582674e-02	ci left: 3.676863e-01	ci right 3.811502e-01	k: 7488	n:20000
KS ci ratio: 7.175291e-02	ci left: 1.251713e-01	ci right 1.345366e-01	k: 2596	n:20000
SEMA5B   20000 perm   4 sec   (4663 perm/sec)   p_kst 1.298000e-01   p_cons 3.744000e-01   p_joint 2.092500e-01

Outputting figure to mutsig2_images.part000000000154/SEMA5B.6_3544_20000_0.1298_0.3744_0.20925.png
                gene_name: SEMA5B
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 13 percent done.
SEPT14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.238439e-02	ci left: 7.455367e-01	ci right 7.625150e-01	k: 7541	n:10000
Cons ci ratio: 5.852375e-02	ci left: 3.005450e-01	ci right 3.187660e-01	k: 3096	n:10000
KS ci ratio: 1.959461e-02	ci left: 7.921247e-01	ci right 8.079001e-01	k: 8001	n:10000
SEPT14   10000 perm   2 sec   (5505 perm/sec)   p_kst 8.001000e-01   p_cons 3.096000e-01   p_joint 7.541000e-01

Outputting figure to mutsig2_images.part000000000154/SEPT14.6_1335_10000_0.8001_0.3096_0.7541.png
                gene_name: SEPT14
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.76 

Current progress: 15 percent done.
SEC23B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.855515e-02	ci left: 3.849027e-01	ci right 4.041588e-01	k: 3945	n:10000
Cons ci ratio: 7.052912e-02	ci left: 2.276066e-01	ci right 2.443474e-01	k: 2359	n:10000
KS ci ratio: 4.031520e-02	ci left: 4.760594e-01	ci right 4.957488e-01	k: 4859	n:10000
SEC23B   10000 perm   2 sec   (5419 perm/sec)   p_kst 4.859000e-01   p_cons 2.359000e-01   p_joint 3.945000e-01

Outputting figure to mutsig2_images.part000000000154/SEC23B.5_2380_10000_0.4859_0.2359_0.3945.png
                gene_name: SEC23B
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 17 percent done.
SEC24A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.475109e-02	ci left: 2.594365e-01	ci right 2.768988e-01	k: 2681	n:10000
Cons ci ratio: 7.241845e-02	ci left: 2.183268e-01	ci right 2.348328e-01	k: 2265	n:10000
KS ci ratio: 7.062704e-02	ci left: 2.271129e-01	ci right 2.438415e-01	k: 2354	n:10000
SEC24A   10000 perm   2 sec   (4789 perm/sec)   p_kst 2.354000e-01   p_cons 2.265000e-01   p_joint 2.681000e-01

Outputting figure to mutsig2_images.part000000000154/SEC24A.5_3374_10000_0.2354_0.2265_0.2681.png
                gene_name: SEC24A
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 19 percent done.
SEMA3C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.102203e-01	ci left: 3.005970e-02	ci right 3.721534e-02	k: 335	n:10000
Cons ci ratio: 6.185349e-01	ci left: 2.774707e-03	ci right 5.327611e-03	k: 39	n:10000
KS ci ratio: 9.627528e-02	ci left: 1.353117e-01	ci right 1.490975e-01	k: 1421	n:10000
SEMA3C   10000 perm   2 sec   (5136 perm/sec)   p_kst 1.421000e-01   p_cons 3.900000e-03   p_joint 3.350000e-02

Joint ci ratio: 1.613936e-01	ci left: 2.633371e-02	ci right 3.100466e-02	k: 572	n:20000
Cons ci ratio: 4.169427e-01	ci left: 3.485595e-03	ci right 5.362982e-03	k: 87	n:20000
KS ci ratio: 6.818988e-02	ci left: 1.369434e-01	ci right 1.466610e-01	k: 2835	n:20000
SEMA3C   20000 perm   4 sec   (4645 perm/sec)   p_kst 1.417500e-01   p_cons 4.350000e-03   p_joint 2.860000e-02

Joint ci ratio: 1.064235e-01	ci left: 4.095956e-02	ci right 4.559608e-02	k: 1297	n:30000
Cons ci ratio: 3.236258e-01	ci left: 4.080135e-03	ci right 5.684730e-03	k: 145	n:30000
KS ci ratio: 5.598418e-02	ci left: 1.365201e-01	ci right 1.444164e-01	k: 4213	n:30000
SEMA3C   30000 perm   7 sec   (4442 perm/sec)   p_kst 1.404333e-01   p_cons 4.833333e-03   p_joint 4.323333e-02

Joint ci ratio: 9.967726e-02	ci left: 3.536653e-02	ci right 3.910104e-02	k: 1488	n:40000
Cons ci ratio: 2.785964e-01	ci left: 4.239341e-03	ci right 5.634023e-03	k: 196	n:40000
KS ci ratio: 4.771426e-02	ci left: 1.409193e-01	ci right 1.478324e-01	k: 5774	n:40000
SEMA3C   40000 perm   9 sec   (4312 perm/sec)   p_kst 1.443500e-01   p_cons 4.900000e-03   p_joint 3.720000e-02

Joint ci ratio: 8.121390e-02	ci left: 4.270907e-02	ci right 4.634405e-02	k: 2225	n:50000
Cons ci ratio: 2.118657e-01	ci left: 6.079469e-03	ci right 7.538676e-03	k: 339	n:50000
KS ci ratio: 4.276966e-02	ci left: 1.407550e-01	ci right 1.469265e-01	k: 7191	n:50000
SEMA3C   50000 perm   12 sec   (4215 perm/sec)   p_kst 1.438200e-01   p_cons 6.780000e-03   p_joint 4.450000e-02

Joint ci ratio: 6.960997e-02	ci left: 4.844987e-02	ci right 5.196046e-02	k: 3011	n:60000
Cons ci ratio: 1.938854e-01	ci left: 6.110446e-03	ci right 7.437938e-03	k: 405	n:60000
KS ci ratio: 3.911578e-02	ci left: 1.405715e-01	ci right 1.461963e-01	k: 8602	n:60000
SEMA3C   60000 perm   15 sec   (4128 perm/sec)   p_kst 1.433667e-01   p_cons 6.750000e-03   p_joint 5.018333e-02

Joint ci ratio: 5.435682e-02	ci left: 6.727422e-02	ci right 7.104730e-02	k: 4840	n:70000
Cons ci ratio: 1.790597e-01	ci left: 6.190926e-03	ci right 7.421919e-03	k: 475	n:70000
KS ci ratio: 3.620964e-02	ci left: 1.408113e-01	ci right 1.460183e-01	k: 10038	n:70000
SEMA3C   70000 perm   17 sec   (4050 perm/sec)   p_kst 1.434000e-01   p_cons 6.785714e-03   p_joint 6.914286e-02

Joint ci ratio: 5.033288e-02	ci left: 6.869841e-02	ci right 7.225781e-02	k: 5637	n:80000
Cons ci ratio: 1.706832e-01	ci left: 5.990754e-03	ci right 7.120478e-03	k: 523	n:80000
KS ci ratio: 3.390579e-02	ci left: 1.407298e-01	ci right 1.455961e-01	k: 11452	n:80000
SEMA3C   80000 perm   20 sec   (3981 perm/sec)   p_kst 1.431500e-01   p_cons 6.537500e-03   p_joint 7.046250e-02

Joint ci ratio: 4.718972e-02	ci left: 6.952821e-02	ci right 7.289949e-02	k: 6408	n:90000
Cons ci ratio: 1.625252e-01	ci left: 5.900084e-03	ci right 6.954330e-03	k: 577	n:90000
KS ci ratio: 3.194012e-02	ci left: 1.410721e-01	ci right 1.456621e-01	k: 12902	n:90000
SEMA3C   90000 perm   23 sec   (3915 perm/sec)   p_kst 1.433556e-01   p_cons 6.411111e-03   p_joint 7.120000e-02

Joint ci ratio: 4.836153e-02	ci left: 6.015712e-02	ci right 6.314837e-02	k: 6164	n:100000
Cons ci ratio: 1.533726e-01	ci left: 5.992051e-03	ci right 6.996895e-03	k: 648	n:100000
KS ci ratio: 3.026617e-02	ci left: 1.414716e-01	ci right 1.458291e-01	k: 14364	n:100000
SEMA3C   100000 perm   26 sec   (3853 perm/sec)   p_kst 1.436400e-01   p_cons 6.480000e-03   p_joint 6.164000e-02

Joint ci ratio: 4.650501e-02	ci left: 5.926001e-02	ci right 6.209048e-02	k: 6673	n:110000
Cons ci ratio: 1.456102e-01	ci left: 6.068659e-03	ci right 7.030364e-03	k: 719	n:110000
KS ci ratio: 2.882732e-02	ci left: 1.418307e-01	ci right 1.459881e-01	k: 15829	n:110000
SEMA3C   110000 perm   29 sec   (3793 perm/sec)   p_kst 1.439000e-01   p_cons 6.536364e-03   p_joint 6.066364e-02

Joint ci ratio: 4.428840e-02	ci left: 5.992448e-02	ci right 6.264677e-02	k: 7353	n:120000
Cons ci ratio: 1.394519e-01	ci left: 6.085296e-03	ci right 7.005462e-03	k: 784	n:120000
KS ci ratio: 2.761883e-02	ci left: 1.417529e-01	ci right 1.457310e-01	k: 17248	n:120000
SEMA3C   120000 perm   32 sec   (3737 perm/sec)   p_kst 1.437333e-01   p_cons 6.533333e-03   p_joint 6.127500e-02

Joint ci ratio: 4.515613e-02	ci left: 5.355371e-02	ci right 5.603543e-02	k: 7122	n:130000
Cons ci ratio: 1.333056e-01	ci left: 6.167028e-03	ci right 7.055195e-03	k: 858	n:130000
KS ci ratio: 2.652406e-02	ci left: 1.419350e-01	ci right 1.457579e-01	k: 18699	n:130000
SEMA3C   130000 perm   35 sec   (3669 perm/sec)   p_kst 1.438385e-01   p_cons 6.600000e-03   p_joint 5.478462e-02

Joint ci ratio: 3.909080e-02	ci left: 6.570281e-02	ci right 6.832944e-02	k: 9381	n:140000
Cons ci ratio: 1.281138e-01	ci left: 6.217099e-03	ci right 7.074954e-03	k: 929	n:140000
KS ci ratio: 2.556847e-02	ci left: 1.419161e-01	ci right 1.455987e-01	k: 20125	n:140000
SEMA3C   140000 perm   39 sec   (3609 perm/sec)   p_kst 1.437500e-01   p_cons 6.635714e-03   p_joint 6.700714e-02

Joint ci ratio: 3.774145e-02	ci left: 6.582569e-02	ci right 6.836441e-02	k: 10063	n:150000
Cons ci ratio: 1.232990e-01	ci left: 6.280461e-03	ci right 7.112112e-03	k: 1003	n:150000
KS ci ratio: 2.471058e-02	ci left: 1.418886e-01	ci right 1.454452e-01	k: 21549	n:150000
SEMA3C   150000 perm   42 sec   (3560 perm/sec)   p_kst 1.436600e-01   p_cons 6.686667e-03   p_joint 6.708667e-02

Joint ci ratio: 4.101540e-02	ci left: 5.289750e-02	ci right 5.511870e-02	k: 8640	n:160000
Cons ci ratio: 1.192679e-01	ci left: 6.306105e-03	ci right 7.111926e-03	k: 1072	n:160000
KS ci ratio: 2.393909e-02	ci left: 1.418104e-01	ci right 1.452525e-01	k: 22964	n:160000
SEMA3C   160000 perm   46 sec   (3513 perm/sec)   p_kst 1.435250e-01   p_cons 6.700000e-03   p_joint 5.400000e-02

Joint ci ratio: 3.513088e-02	ci left: 6.704110e-02	ci right 6.944423e-02	k: 11600	n:170000
Cons ci ratio: 1.156591e-01	ci left: 6.323409e-03	ci right 7.105321e-03	k: 1140	n:170000
KS ci ratio: 2.320785e-02	ci left: 1.420356e-01	ci right 1.453765e-01	k: 24429	n:170000
SEMA3C   170000 perm   49 sec   (3463 perm/sec)   p_kst 1.437000e-01   p_cons 6.705882e-03   p_joint 6.823529e-02

Joint ci ratio: 3.562596e-02	ci left: 6.189838e-02	ci right 6.414905e-02	k: 11343	n:180000
Cons ci ratio: 1.128298e-01	ci left: 6.285116e-03	ci right 7.042015e-03	k: 1198	n:180000
KS ci ratio: 2.258870e-02	ci left: 1.417065e-01	ci right 1.449495e-01	k: 25798	n:180000
SEMA3C   180000 perm   53 sec   (3403 perm/sec)   p_kst 1.433222e-01   p_cons 6.655556e-03   p_joint 6.301667e-02

Joint ci ratio: 3.559064e-02	ci left: 5.894667e-02	ci right 6.108783e-02	k: 11402	n:190000
Cons ci ratio: 1.100664e-01	ci left: 6.266420e-03	ci right 7.001386e-03	k: 1259	n:190000
KS ci ratio: 2.201656e-02	ci left: 1.414130e-01	ci right 1.445663e-01	k: 27167	n:190000
SEMA3C   190000 perm   57 sec   (3358 perm/sec)   p_kst 1.429842e-01   p_cons 6.626316e-03   p_joint 6.001053e-02

Joint ci ratio: 3.826781e-02	ci left: 4.889527e-02	ci right 5.080781e-02	k: 9969	n:200000
Cons ci ratio: 1.070893e-01	ci left: 6.298464e-03	ci right 7.015947e-03	k: 1330	n:200000
KS ci ratio: 2.147175e-02	ci left: 1.413092e-01	ci right 1.443812e-01	k: 28568	n:200000
SEMA3C   200000 perm   61 sec   (3299 perm/sec)   p_kst 1.428400e-01   p_cons 6.650000e-03   p_joint 4.984500e-02

Joint ci ratio: 3.657523e-02	ci left: 5.091258e-02	ci right 5.281410e-02	k: 10890	n:210000
Cons ci ratio: 1.046801e-01	ci left: 6.285955e-03	ci right 6.984911e-03	k: 1392	n:210000
KS ci ratio: 2.094063e-02	ci left: 1.415053e-01	ci right 1.445046e-01	k: 30030	n:210000
SEMA3C   210000 perm   64 sec   (3261 perm/sec)   p_kst 1.430000e-01   p_cons 6.628571e-03   p_joint 5.185714e-02

Joint ci ratio: 3.311980e-02	ci left: 5.887134e-02	ci right 6.085846e-02	k: 13169	n:220000
Cons ci ratio: 1.024620e-01	ci left: 6.270317e-03	ci right 6.951871e-03	k: 1453	n:220000
KS ci ratio: 2.044365e-02	ci left: 1.417252e-01	ci right 1.446570e-01	k: 31501	n:220000
SEMA3C   220000 perm   68 sec   (3223 perm/sec)   p_kst 1.431864e-01   p_cons 6.604545e-03   p_joint 5.985909e-02

Joint ci ratio: 3.196749e-02	ci left: 6.038343e-02	ci right 6.234938e-02	k: 14113	n:230000
Cons ci ratio: 1.002461e-01	ci left: 6.273140e-03	ci right 6.939386e-03	k: 1518	n:230000
KS ci ratio: 2.000169e-02	ci left: 1.416669e-01	ci right 1.445334e-01	k: 32912	n:230000
SEMA3C   230000 perm   72 sec   (3187 perm/sec)   p_kst 1.430957e-01   p_cons 6.600000e-03   p_joint 6.136087e-02

Joint ci ratio: 3.069341e-02	ci left: 6.265994e-02	ci right 6.461728e-02	k: 15272	n:240000
Cons ci ratio: 9.819914e-02	ci left: 6.271808e-03	ci right 6.923527e-03	k: 1582	n:240000
KS ci ratio: 1.957291e-02	ci left: 1.417926e-01	ci right 1.445994e-01	k: 34366	n:240000
SEMA3C   240000 perm   76 sec   (3152 perm/sec)   p_kst 1.431917e-01   p_cons 6.591667e-03   p_joint 6.363333e-02

Outputting figure to mutsig2_images.part000000000154/SEMA3C.5_2324_240000_0.14319_0.0065917_0.063633.png
                gene_name: SEMA3C
               theta_stop: 0.098 
                    nperm: 240000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.0066 
      ci_cons_bounds_left: 0.0063 
     ci_cons_bounds_right: 0.0069 
                  p_joint: 0.064 
     ci_joint_bounds_left: 0.063 
    ci_joint_bounds_right: 0.065 

Current progress: 21 percent done.
SEMA3E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.588410e-02	ci left: 8.520244e-01	ci right 8.657658e-01	k: 8590	n:10000
KS ci ratio: 1.360105e-02	ci left: 8.863668e-01	ci right 8.986035e-01	k: 8926	n:10000
SEMA3E   10000 perm   2 sec   (5388 perm/sec)   p_kst 8.926000e-01   p_cons 8.590000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000154/SEMA3E.5_2396_10000_0.8926_0.859_1.png
                gene_name: SEMA3E
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 23 percent done.
SEMA6C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.186790e-02	ci left: 1.788095e-01	ci right 1.941736e-01	k: 1864	n:10000
Cons ci ratio: 5.679055e-02	ci left: 3.134405e-01	ci right 3.318629e-01	k: 3226	n:10000
KS ci ratio: 1.140181e-01	ci left: 9.964203e-02	ci right 1.117887e-01	k: 1056	n:10000
SEMA6C   10000 perm   2 sec   (4997 perm/sec)   p_kst 1.056000e-01   p_cons 3.226000e-01   p_joint 1.864000e-01

Joint ci ratio: 6.676976e-02	ci left: 1.420697e-01	ci right 1.519332e-01	k: 2939	n:20000
Cons ci ratio: 3.971117e-02	ci left: 3.210461e-01	ci right 3.341040e-01	k: 6551	n:20000
KS ci ratio: 8.283239e-02	ci left: 9.651357e-02	ci right 1.049029e-01	k: 2013	n:20000
SEMA6C   20000 perm   4 sec   (4531 perm/sec)   p_kst 1.006500e-01   p_cons 3.275500e-01   p_joint 1.469500e-01

Outputting figure to mutsig2_images.part000000000154/SEMA6C.5_2961_20000_0.10065_0.32755_0.14695.png
                gene_name: SEMA6C
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.097 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 25 percent done.
SEMG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.489098e-02	ci left: 5.481004e-01	ci right 5.676658e-01	k: 5579	n:10000
Cons ci ratio: 9.035409e-02	ci left: 1.511960e-01	ci right 1.656036e-01	k: 1583	n:10000
KS ci ratio: 1.394590e-02	ci left: 8.813485e-01	ci right 8.938247e-01	k: 8877	n:10000
SEMG2   10000 perm   2 sec   (5642 perm/sec)   p_kst 8.877000e-01   p_cons 1.583000e-01   p_joint 5.579000e-01

Outputting figure to mutsig2_images.part000000000154/SEMG2.5_1757_10000_0.8877_0.1583_0.5579.png
                gene_name: SEMG2
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 27 percent done.
SENP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.575280e-02	ci left: 8.540644e-01	ci right 8.677246e-01	k: 8610	n:10000
KS ci ratio: 1.224924e-02	ci left: 9.053515e-01	ci right 9.166077e-01	k: 9111	n:10000
SENP5   10000 perm   2 sec   (5401 perm/sec)   p_kst 9.111000e-01   p_cons 8.610000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000154/SENP5.5_2304_10000_0.9111_0.861_1.png
                gene_name: SENP5
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 29 percent done.
SEC16B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.339508e-03	ci left: 9.713246e-01	ci right 9.775949e-01	k: 9746	n:10000
KS ci ratio: 2.723572e-02	ci left: 6.651158e-01	ci right 6.835825e-01	k: 6744	n:10000
SEC16B   10000 perm   2 sec   (5438 perm/sec)   p_kst 6.744000e-01   p_cons 9.746000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000154/SEC16B.4_3283_10000_0.6744_0.9746_1.png
                gene_name: SEC16B
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 31 percent done.
SEC22B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.349092e-02	ci left: 5.682486e-01	ci right 5.877059e-01	k: 5780	n:10000
Cons ci ratio: 1.511547e-02	ci left: 8.638635e-01	ci right 8.771198e-01	k: 8706	n:10000
KS ci ratio: 3.775496e-02	ci left: 5.088528e-01	ci right 5.285363e-01	k: 5187	n:10000
SEC22B   10000 perm   2 sec   (6514 perm/sec)   p_kst 5.187000e-01   p_cons 8.706000e-01   p_joint 5.780000e-01

Outputting figure to mutsig2_images.part000000000154/SEC22B.4_668_10000_0.5187_0.8706_0.578.png
                gene_name: SEC22B
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 33 percent done.
SEC24B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.626226e-02	ci left: 8.461108e-01	ci right 8.600828e-01	k: 8532	n:10000
Cons ci ratio: 2.454756e-02	ci left: 7.093708e-01	ci right 7.271019e-01	k: 7183	n:10000
KS ci ratio: 4.052554e-02	ci left: 4.734617e-01	ci right 4.931480e-01	k: 4833	n:10000
SEC24B   10000 perm   2 sec   (4836 perm/sec)   p_kst 4.833000e-01   p_cons 7.183000e-01   p_joint 8.532000e-01

Outputting figure to mutsig2_images.part000000000154/SEC24B.4_3903_10000_0.4833_0.7183_0.8532.png
                gene_name: SEC24B
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 35 percent done.
SEC31A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.120495e-02	ci left: 4.651709e-01	ci right 4.848436e-01	k: 4750	n:10000
Cons ci ratio: 1.437615e-01	ci left: 6.420510e-02	ci right 7.424761e-02	k: 691	n:10000
KS ci ratio: 2.893970e-02	ci left: 6.377427e-01	ci right 6.565715e-01	k: 6472	n:10000
SEC31A   10000 perm   2 sec   (4926 perm/sec)   p_kst 6.472000e-01   p_cons 6.910000e-02   p_joint 4.750000e-01

Joint ci ratio: 3.594941e-02	ci left: 3.660924e-01	ci right 3.795446e-01	k: 7456	n:20000
Cons ci ratio: 1.035587e-01	ci left: 6.337790e-02	ci right 7.034867e-02	k: 1336	n:20000
KS ci ratio: 2.107079e-02	ci left: 6.270289e-01	ci right 6.404322e-01	k: 12675	n:20000
SEC31A   20000 perm   4 sec   (4467 perm/sec)   p_kst 6.337500e-01   p_cons 6.680000e-02   p_joint 3.728000e-01

Joint ci ratio: 3.110175e-02	ci left: 3.407816e-01	ci right 3.515815e-01	k: 10385	n:30000
Cons ci ratio: 8.468047e-02	ci left: 6.383672e-02	ci right 6.951422e-02	k: 1999	n:30000
KS ci ratio: 1.715450e-02	ci left: 6.296230e-01	ci right 6.405508e-01	k: 19053	n:30000
SEC31A   30000 perm   7 sec   (4285 perm/sec)   p_kst 6.351000e-01   p_cons 6.663333e-02   p_joint 3.461667e-01

Outputting figure to mutsig2_images.part000000000154/SEC31A.4_3767_30000_0.6351_0.066633_0.34617.png
                gene_name: SEC31A
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.067 
      ci_cons_bounds_left: 0.064 
     ci_cons_bounds_right: 0.070 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 37 percent done.
SEL1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.883815e-01	ci left: 3.757958e-02	ci right 4.549032e-02	k: 414	n:10000
Cons ci ratio: 4.208622e-01	ci left: 6.794980e-03	ci right 1.049980e-02	k: 85	n:10000
KS ci ratio: 3.767943e-02	ci left: 5.098532e-01	ci right 5.295353e-01	k: 5197	n:10000
SEL1L   10000 perm   2 sec   (5460 perm/sec)   p_kst 5.197000e-01   p_cons 8.500000e-03   p_joint 4.140000e-02

Joint ci ratio: 9.668205e-02	ci left: 7.226644e-02	ci right 7.965740e-02	k: 1518	n:20000
Cons ci ratio: 3.313245e-01	ci left: 5.799905e-03	ci right 8.146877e-03	k: 138	n:20000
KS ci ratio: 2.664527e-02	ci left: 5.127484e-01	ci right 5.266459e-01	k: 10394	n:20000
SEL1L   20000 perm   4 sec   (4817 perm/sec)   p_kst 5.197000e-01   p_cons 6.900000e-03   p_joint 7.590000e-02

Joint ci ratio: 8.037199e-02	ci left: 7.050637e-02	ci right 7.644321e-02	k: 2203	n:30000
Cons ci ratio: 2.676344e-01	ci left: 6.150100e-03	ci right 8.080539e-03	k: 212	n:30000
KS ci ratio: 2.175919e-02	ci left: 5.139614e-01	ci right 5.253014e-01	k: 15589	n:30000
SEL1L   30000 perm   6 sec   (4627 perm/sec)   p_kst 5.196333e-01   p_cons 7.066667e-03   p_joint 7.343333e-02

Joint ci ratio: 1.005930e-01	ci left: 3.473223e-02	ci right 3.843544e-02	k: 1462	n:40000
Cons ci ratio: 2.360005e-01	ci left: 6.041636e-03	ci right 7.681186e-03	k: 273	n:40000
KS ci ratio: 1.896949e-02	ci left: 5.114142e-01	ci right 5.212335e-01	k: 20653	n:40000
SEL1L   40000 perm   9 sec   (4472 perm/sec)   p_kst 5.163250e-01   p_cons 6.825000e-03   p_joint 3.655000e-02

Joint ci ratio: 7.104034e-02	ci left: 5.535724e-02	ci right 5.945434e-02	k: 2869	n:50000
Cons ci ratio: 2.134517e-01	ci left: 5.984764e-03	ci right 7.433400e-03	k: 334	n:50000
KS ci ratio: 1.692369e-02	ci left: 5.132092e-01	ci right 5.219888e-01	k: 25880	n:50000
SEL1L   50000 perm   11 sec   (4368 perm/sec)   p_kst 5.176000e-01   p_cons 6.680000e-03   p_joint 5.738000e-02

Joint ci ratio: 6.752310e-02	ci left: 5.138471e-02	ci right 5.499199e-02	k: 3190	n:60000
Cons ci ratio: 1.934064e-01	ci left: 6.142172e-03	ci right 7.472873e-03	k: 407	n:60000
KS ci ratio: 1.551949e-02	ci left: 5.113255e-01	ci right 5.193397e-01	k: 30920	n:60000
SEL1L   60000 perm   14 sec   (4257 perm/sec)   p_kst 5.153333e-01   p_cons 6.783333e-03   p_joint 5.316667e-02

Joint ci ratio: 6.533204e-02	ci left: 4.731399e-02	ci right 5.052354e-02	k: 3423	n:70000
Cons ci ratio: 1.800141e-01	ci left: 6.122689e-03	ci right 7.347309e-03	k: 470	n:70000
KS ci ratio: 1.446986e-02	ci left: 5.081038e-01	ci right 5.155238e-01	k: 35827	n:70000
SEL1L   70000 perm   17 sec   (4177 perm/sec)   p_kst 5.118143e-01   p_cons 6.714286e-03   p_joint 4.890000e-02

Joint ci ratio: 6.108913e-02	ci left: 4.745267e-02	ci right 5.045515e-02	k: 3915	n:80000
Cons ci ratio: 1.674952e-01	ci left: 6.230238e-03	ci right 7.380966e-03	k: 543	n:80000
KS ci ratio: 1.352491e-02	ci left: 5.087296e-01	ci right 5.156695e-01	k: 40976	n:80000
SEL1L   80000 perm   20 sec   (4097 perm/sec)   p_kst 5.122000e-01   p_cons 6.787500e-03   p_joint 4.893750e-02

Joint ci ratio: 5.780613e-02	ci left: 4.720417e-02	ci right 5.002501e-02	k: 4374	n:90000
Cons ci ratio: 1.588332e-01	ci left: 6.188093e-03	ci right 7.266292e-03	k: 604	n:90000
KS ci ratio: 1.275171e-02	ci left: 5.089173e-01	ci right 5.154596e-01	k: 46097	n:90000
SEL1L   90000 perm   22 sec   (4028 perm/sec)   p_kst 5.121889e-01   p_cons 6.711111e-03   p_joint 4.860000e-02

Joint ci ratio: 5.468685e-02	ci left: 4.753198e-02	ci right 5.021427e-02	k: 4886	n:100000
Cons ci ratio: 1.503700e-01	ci left: 6.242230e-03	ci right 7.266694e-03	k: 674	n:100000
KS ci ratio: 1.211696e-02	ci left: 5.082765e-01	ci right 5.144828e-01	k: 51138	n:100000
SEL1L   100000 perm   25 sec   (3967 perm/sec)   p_kst 5.113800e-01   p_cons 6.740000e-03   p_joint 4.886000e-02

Joint ci ratio: 5.220164e-02	ci left: 4.748927e-02	ci right 5.004368e-02	k: 5363	n:110000
Cons ci ratio: 1.440083e-01	ci left: 6.208875e-03	ci right 7.181045e-03	k: 735	n:110000
KS ci ratio: 1.154925e-02	ci left: 5.085867e-01	ci right 5.145036e-01	k: 56270	n:110000
SEL1L   110000 perm   28 sec   (3912 perm/sec)   p_kst 5.115455e-01   p_cons 6.681818e-03   p_joint 4.875455e-02

Joint ci ratio: 5.896917e-02	ci left: 3.446834e-02	ci right 3.657085e-02	k: 4261	n:120000
Cons ci ratio: 1.381296e-01	ci left: 6.205981e-03	ci right 7.134768e-03	k: 799	n:120000
KS ci ratio: 1.105011e-02	ci left: 5.090507e-01	ci right 5.147153e-01	k: 61426	n:120000
SEL1L   120000 perm   31 sec   (3859 perm/sec)   p_kst 5.118833e-01   p_cons 6.658333e-03   p_joint 3.550833e-02

Joint ci ratio: 5.657430e-02	ci left: 3.460688e-02	ci right 3.662929e-02	k: 4629	n:130000
Cons ci ratio: 1.336191e-01	ci left: 6.137280e-03	ci right 7.023407e-03	k: 854	n:130000
KS ci ratio: 1.060417e-02	ci left: 5.097480e-01	ci right 5.151899e-01	k: 66621	n:130000
SEL1L   130000 perm   34 sec   (3806 perm/sec)   p_kst 5.124692e-01   p_cons 6.569231e-03   p_joint 3.560769e-02

Joint ci ratio: 5.436479e-02	ci left: 3.483284e-02	ci right 3.678645e-02	k: 5012	n:140000
Cons ci ratio: 1.293802e-01	ci left: 6.092644e-03	ci right 6.942275e-03	k: 911	n:140000
KS ci ratio: 1.022044e-02	ci left: 5.097493e-01	ci right 5.149930e-01	k: 71732	n:140000
SEL1L   140000 perm   37 sec   (3754 perm/sec)   p_kst 5.123714e-01   p_cons 6.507143e-03   p_joint 3.580000e-02

Joint ci ratio: 5.288018e-02	ci left: 3.440470e-02	ci right 3.627999e-02	k: 5300	n:150000
Cons ci ratio: 1.249381e-01	ci left: 6.112477e-03	ci right 6.933440e-03	k: 977	n:150000
KS ci ratio: 9.869244e-03	ci left: 5.100736e-01	ci right 5.151392e-01	k: 76891	n:150000
SEL1L   150000 perm   41 sec   (3700 perm/sec)   p_kst 5.126067e-01   p_cons 6.513333e-03   p_joint 3.533333e-02

Joint ci ratio: 4.313300e-02	ci left: 4.802774e-02	ci right 5.015114e-02	k: 7853	n:160000
Cons ci ratio: 1.208077e-01	ci left: 6.142391e-03	ci right 6.938148e-03	k: 1045	n:160000
KS ci ratio: 9.232368e-03	ci left: 5.273445e-01	ci right 5.322419e-01	k: 84767	n:160000
SEL1L   160000 perm   44 sec   (3648 perm/sec)   p_kst 5.297937e-01   p_cons 6.531250e-03   p_joint 4.908125e-02

Joint ci ratio: 4.322153e-02	ci left: 4.515454e-02	ci right 4.715509e-02	k: 7845	n:170000
Cons ci ratio: 1.170616e-01	ci left: 6.169180e-03	ci right 6.941910e-03	k: 1113	n:170000
KS ci ratio: 8.958191e-03	ci left: 5.273357e-01	ci right 5.320868e-01	k: 90051	n:170000
SEL1L   170000 perm   47 sec   (3597 perm/sec)   p_kst 5.297118e-01   p_cons 6.547059e-03   p_joint 4.614706e-02

Joint ci ratio: 4.774696e-02	ci left: 3.523197e-02	ci right 3.696079e-02	k: 6496	n:180000
Cons ci ratio: 1.141798e-01	ci left: 6.133950e-03	ci right 6.882077e-03	k: 1170	n:180000
KS ci ratio: 8.707463e-03	ci left: 5.273076e-01	ci right 5.319247e-01	k: 95331	n:180000
SEL1L   180000 perm   51 sec   (3547 perm/sec)   p_kst 5.296167e-01   p_cons 6.500000e-03   p_joint 3.608889e-02

Joint ci ratio: 4.647329e-02	ci left: 3.525528e-02	ci right 3.693786e-02	k: 6857	n:190000
Cons ci ratio: 1.110917e-01	ci left: 6.148695e-03	ci right 6.877011e-03	k: 1236	n:190000
KS ci ratio: 8.467633e-03	ci left: 5.278159e-01	ci right 5.323095e-01	k: 100712	n:190000
SEL1L   190000 perm   54 sec   (3499 perm/sec)   p_kst 5.300632e-01   p_cons 6.505263e-03   p_joint 3.608947e-02

Joint ci ratio: 4.525739e-02	ci left: 3.533616e-02	ci right 3.697732e-02	k: 7230	n:200000
Cons ci ratio: 1.078671e-01	ci left: 6.206002e-03	ci right 6.918413e-03	k: 1311	n:200000
KS ci ratio: 8.252455e-03	ci left: 5.279197e-01	ci right 5.322994e-01	k: 106022	n:200000
SEL1L   200000 perm   58 sec   (3451 perm/sec)   p_kst 5.301100e-01   p_cons 6.555000e-03   p_joint 3.615000e-02

Joint ci ratio: 3.895568e-02	ci left: 4.510321e-02	ci right 4.689983e-02	k: 9659	n:210000
Cons ci ratio: 1.045292e-01	ci left: 6.304507e-03	ci right 7.004453e-03	k: 1396	n:210000
KS ci ratio: 8.056431e-03	ci left: 5.277959e-01	ci right 5.320699e-01	k: 111286	n:210000
SEL1L   210000 perm   62 sec   (3407 perm/sec)   p_kst 5.299333e-01   p_cons 6.647619e-03   p_joint 4.599524e-02

Joint ci ratio: 4.319944e-02	ci left: 3.529737e-02	ci right 3.686034e-02	k: 7936	n:220000
Cons ci ratio: 1.024975e-01	ci left: 6.265887e-03	ci right 6.947210e-03	k: 1452	n:220000
KS ci ratio: 7.873382e-03	ci left: 5.277072e-01	ci right 5.318829e-01	k: 116555	n:220000
SEL1L   220000 perm   65 sec   (3363 perm/sec)   p_kst 5.297955e-01   p_cons 6.600000e-03   p_joint 3.607273e-02

Joint ci ratio: 3.715356e-02	ci left: 4.530687e-02	ci right 4.702633e-02	k: 10617	n:230000
Cons ci ratio: 1.000804e-01	ci left: 6.294338e-03	ci right 6.961666e-03	k: 1523	n:230000
KS ci ratio: 7.700923e-03	ci left: 5.277142e-01	ci right 5.317981e-01	k: 121844	n:230000
SEL1L   230000 perm   69 sec   (3320 perm/sec)   p_kst 5.297565e-01   p_cons 6.621739e-03   p_joint 4.616087e-02

Joint ci ratio: 3.643971e-02	ci left: 4.516117e-02	ci right 4.684148e-02	k: 11039	n:240000
Cons ci ratio: 9.804340e-02	ci left: 6.292133e-03	ci right 6.944868e-03	k: 1587	n:240000
KS ci ratio: 7.534216e-03	ci left: 5.280591e-01	ci right 5.320568e-01	k: 127214	n:240000
SEL1L   240000 perm   73 sec   (3279 perm/sec)   p_kst 5.300583e-01   p_cons 6.612500e-03   p_joint 4.599583e-02

Outputting figure to mutsig2_images.part000000000154/SEL1L.4_2469_240000_0.53006_0.0066125_0.045996.png
                gene_name: SEL1L
               theta_stop: 0.098 
                    nperm: 240000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.0066 
      ci_cons_bounds_left: 0.0063 
     ci_cons_bounds_right: 0.0069 
                  p_joint: 0.046 
     ci_joint_bounds_left: 0.045 
    ci_joint_bounds_right: 0.047 

Current progress: 38 percent done.
SELE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.003217e-02	ci left: 9.337157e-01	ci right 9.432269e-01	k: 9386	n:10000
KS ci ratio: 1.614530e-02	ci left: 8.479456e-01	ci right 8.618469e-01	k: 8550	n:10000
SELE   10000 perm   2 sec   (5554 perm/sec)   p_kst 8.550000e-01   p_cons 9.386000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000154/SELE.4_1881_10000_0.855_0.9386_1.png
                gene_name: SELE
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 40 percent done.
SEMA3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.407791e-02	ci left: 5.597262e-01	ci right 5.792333e-01	k: 5695	n:10000
Cons ci ratio: 1.711004e-02	ci left: 8.326658e-01	ci right 8.471356e-01	k: 8400	n:10000
KS ci ratio: 6.611438e-02	ci left: 2.514238e-01	ci right 2.687162e-01	k: 2600	n:10000
SEMA3A   10000 perm   2 sec   (5775 perm/sec)   p_kst 2.600000e-01   p_cons 8.400000e-01   p_joint 5.695000e-01

Outputting figure to mutsig2_images.part000000000154/SEMA3A.4_2384_10000_0.26_0.84_0.5695.png
                gene_name: SEMA3A
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 42 percent done.
SENP7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.711256e-02	ci left: 3.993415e-01	ci right 4.187115e-01	k: 4090	n:10000
Cons ci ratio: 1.201483e-01	ci left: 9.039166e-02	ci right 1.020448e-01	k: 961	n:10000
KS ci ratio: 1.536921e-02	ci left: 8.599833e-01	ci right 8.734023e-01	k: 8668	n:10000
SENP7   10000 perm   2 sec   (5191 perm/sec)   p_kst 8.668000e-01   p_cons 9.610000e-02   p_joint 4.090000e-01

Joint ci ratio: 4.016622e-02	ci left: 3.160727e-01	ci right 3.290789e-01	k: 6451	n:20000
Cons ci ratio: 8.491052e-02	ci left: 9.219640e-02	ci right 1.004214e-01	k: 1925	n:20000
KS ci ratio: 1.097237e-02	ci left: 8.597294e-01	ci right 8.692644e-01	k: 17291	n:20000
SENP7   20000 perm   4 sec   (4686 perm/sec)   p_kst 8.645500e-01   p_cons 9.625000e-02   p_joint 3.225500e-01

Outputting figure to mutsig2_images.part000000000154/SENP7.4_3249_20000_0.86455_0.09625_0.32255.png
                gene_name: SENP7
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.096 
      ci_cons_bounds_left: 0.092 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 44 percent done.
SEPT12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.205248e-02	ci left: 7.510997e-01	ci right 7.679489e-01	k: 7596	n:10000
KS ci ratio: 1.772965e-02	ci left: 8.226953e-01	ci right 8.375119e-01	k: 8302	n:10000
SEPT12   10000 perm   2 sec   (6399 perm/sec)   p_kst 8.302000e-01   p_cons 7.596000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000154/SEPT12.4_1113_10000_0.8302_0.7596_1.png
                gene_name: SEPT12
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 46 percent done.
SEC16A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.912044e-02	ci left: 1.548277e-01	ci right 1.693697e-01	k: 1620	n:10000
Cons ci ratio: 6.114250e-02	ci left: 2.823074e-01	ci right 3.002143e-01	k: 2912	n:10000
KS ci ratio: 1.256428e-01	ci left: 8.310086e-02	ci right 9.434008e-02	k: 886	n:10000
SEC16A   10000 perm   2 sec   (4276 perm/sec)   p_kst 8.860000e-02   p_cons 2.912000e-01   p_joint 1.620000e-01

Joint ci ratio: 7.052524e-02	ci left: 1.290611e-01	ci right 1.385456e-01	k: 2675	n:20000
Cons ci ratio: 4.222003e-02	ci left: 2.947963e-01	ci right 3.075615e-01	k: 6023	n:20000
KS ci ratio: 8.979208e-02	ci left: 8.308030e-02	ci right 9.094026e-02	k: 1739	n:20000
SEC16A   20000 perm   5 sec   (3895 perm/sec)   p_kst 8.695000e-02   p_cons 3.011500e-01   p_joint 1.337500e-01

Outputting figure to mutsig2_images.part000000000154/SEC16A.3_7194_20000_0.08695_0.30115_0.13375.png
                gene_name: SEC16A
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.087 
        ci_ks_bounds_left: 0.083 
       ci_ks_bounds_right: 0.091 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 48 percent done.
SEC23A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.516236e-02	ci left: 8.631486e-01	ci right 8.764352e-01	k: 8699	n:10000
KS ci ratio: 1.527596e-02	ci left: 8.614127e-01	ci right 8.747721e-01	k: 8682	n:10000
SEC23A   10000 perm   2 sec   (5582 perm/sec)   p_kst 8.682000e-01   p_cons 8.699000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000154/SEC23A.3_2374_10000_0.8682_0.8699_1.png
                gene_name: SEC23A
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
SEC24C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.669516e-02	ci left: 5.230630e-01	ci right 5.427178e-01	k: 5329	n:10000
Cons ci ratio: 8.962374e-03	ci left: 9.459616e-01	ci right 9.545737e-01	k: 9504	n:10000
KS ci ratio: 5.576724e-02	ci left: 3.213802e-01	ci right 3.399186e-01	k: 3306	n:10000
SEC24C   10000 perm   2 sec   (5347 perm/sec)   p_kst 3.306000e-01   p_cons 9.504000e-01   p_joint 5.329000e-01

Outputting figure to mutsig2_images.part000000000154/SEC24C.3_3373_10000_0.3306_0.9504_0.5329.png
                gene_name: SEC24C
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 52 percent done.
SEC31B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.057003e-01	ci left: 1.144737e-01	ci right 1.273481e-01	k: 1208	n:10000
Cons ci ratio: 1.051569e-01	ci left: 1.155484e-01	ci right 1.284727e-01	k: 1219	n:10000
KS ci ratio: 1.195306e-01	ci left: 9.126730e-02	ci right 1.029686e-01	k: 970	n:10000
SEC31B   10000 perm   2 sec   (5266 perm/sec)   p_kst 9.700000e-02   p_cons 1.219000e-01   p_joint 1.208000e-01

Joint ci ratio: 8.702652e-02	ci left: 8.807791e-02	ci right 9.614113e-02	k: 1841	n:20000
Cons ci ratio: 7.215255e-02	ci left: 1.239406e-01	ci right 1.332677e-01	k: 2571	n:20000
KS ci ratio: 8.505721e-02	ci left: 9.190214e-02	ci right 1.001157e-01	k: 1919	n:20000
SEC31B   20000 perm   4 sec   (4694 perm/sec)   p_kst 9.595000e-02   p_cons 1.285500e-01   p_joint 9.205000e-02

Outputting figure to mutsig2_images.part000000000154/SEC31B.3_3640_20000_0.09595_0.12855_0.09205.png
                gene_name: SEC31B
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.096 
        ci_ks_bounds_left: 0.092 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.092 
     ci_joint_bounds_left: 0.088 
    ci_joint_bounds_right: 0.096 

Current progress: 54 percent done.
SELT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.430354e-03	ci left: 9.616297e-01	ci right 9.688960e-01	k: 9654	n:10000
KS ci ratio: 2.654387e-02	ci left: 6.763973e-01	ci right 6.946945e-01	k: 6856	n:10000
SELT   10000 perm   2 sec   (6449 perm/sec)   p_kst 6.856000e-01   p_cons 9.654000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000154/SELT.3_608_10000_0.6856_0.9654_1.png
                gene_name: SELT
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 56 percent done.
SEMA3D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.014615e-02	ci left: 4.781577e-01	ci right 4.978493e-01	k: 4880	n:10000
Cons ci ratio: 6.621760e-02	ci left: 2.508304e-01	ci right 2.681099e-01	k: 2594	n:10000
KS ci ratio: 2.648233e-02	ci left: 6.774048e-01	ci right 6.956864e-01	k: 6866	n:10000
SEMA3D   10000 perm   2 sec   (5494 perm/sec)   p_kst 6.866000e-01   p_cons 2.594000e-01   p_joint 4.880000e-01

Outputting figure to mutsig2_images.part000000000154/SEMA3D.3_2402_10000_0.6866_0.2594_0.488.png
                gene_name: SEMA3D
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 58 percent done.
SEMA3F
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.413353e-02	ci left: 5.589243e-01	ci right 5.784357e-01	k: 5687	n:10000
Cons ci ratio: 6.155970e-02	ci left: 2.795337e-01	ci right 2.973897e-01	k: 2884	n:10000
KS ci ratio: 1.076832e-02	ci left: 9.247196e-01	ci right 9.348283e-01	k: 9299	n:10000
SEMA3F   10000 perm   2 sec   (6015 perm/sec)   p_kst 9.299000e-01   p_cons 2.884000e-01   p_joint 5.687000e-01

Outputting figure to mutsig2_images.part000000000154/SEMA3F.3_2430_10000_0.9299_0.2884_0.5687.png
                gene_name: SEMA3F
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 60 percent done.
SEMA3G
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.202174e-01	ci left: 9.029438e-02	ci right 1.019421e-01	k: 960	n:10000
Cons ci ratio: 4.204025e-02	ci left: 4.551856e-01	ci right 4.748348e-01	k: 4650	n:10000
KS ci ratio: 2.772291e-01	ci left: 1.688052e-02	ci right 2.240432e-02	k: 195	n:10000
SEMA3G   10000 perm   2 sec   (5607 perm/sec)   p_kst 1.950000e-02   p_cons 4.650000e-01   p_joint 9.600000e-02

Joint ci ratio: 1.013818e-01	ci left: 6.601338e-02	ci right 7.311238e-02	k: 1390	n:20000
Cons ci ratio: 2.983714e-02	ci left: 4.562700e-01	ci right 4.701407e-01	k: 9264	n:20000
KS ci ratio: 1.962908e-01	ci left: 1.762875e-02	ci right 2.151270e-02	k: 390	n:20000
SEMA3G   20000 perm   4 sec   (5072 perm/sec)   p_kst 1.950000e-02   p_cons 4.632000e-01   p_joint 6.950000e-02

Joint ci ratio: 1.286897e-01	ci left: 2.806632e-02	ci right 3.195873e-02	k: 899	n:30000
Cons ci ratio: 2.435933e-02	ci left: 4.576111e-01	ci right 4.689293e-01	k: 13898	n:30000
KS ci ratio: 1.600634e-01	ci left: 1.802935e-02	ci right 2.119799e-02	k: 587	n:30000
SEMA3G   30000 perm   6 sec   (4866 perm/sec)   p_kst 1.956667e-02   p_cons 4.632667e-01   p_joint 2.996667e-02

Joint ci ratio: 7.549179e-02	ci left: 6.076108e-02	ci right 6.555258e-02	k: 2525	n:40000
Cons ci ratio: 2.172359e-02	ci left: 4.438423e-01	ci right 4.536152e-01	k: 17949	n:40000
KS ci ratio: 1.365035e-01	ci left: 1.881957e-02	ci right 2.160069e-02	k: 807	n:40000
SEMA3G   40000 perm   8 sec   (4715 perm/sec)   p_kst 2.017500e-02   p_cons 4.487250e-01   p_joint 6.312500e-02

Joint ci ratio: 8.100465e-02	ci left: 4.292481e-02	ci right 4.656829e-02	k: 2236	n:50000
Cons ci ratio: 1.941169e-02	ci left: 4.448331e-01	ci right 4.535728e-01	k: 22460	n:50000
KS ci ratio: 1.222163e-01	ci left: 1.892659e-02	ci right 2.140956e-02	k: 1007	n:50000
SEMA3G   50000 perm   11 sec   (4584 perm/sec)   p_kst 2.014000e-02   p_cons 4.492000e-01   p_joint 4.472000e-02

Joint ci ratio: 8.421765e-02	ci left: 3.338040e-02	ci right 3.633148e-02	k: 2090	n:60000
Cons ci ratio: 1.773779e-02	ci left: 4.447312e-01	ci right 4.527071e-01	k: 26923	n:60000
KS ci ratio: 1.108961e-01	ci left: 1.926757e-02	ci right 2.154582e-02	k: 1223	n:60000
SEMA3G   60000 perm   13 sec   (4485 perm/sec)   p_kst 2.038333e-02   p_cons 4.487167e-01   p_joint 3.483333e-02

Joint ci ratio: 8.398035e-02	ci left: 2.891659e-02	ci right 3.146541e-02	k: 2112	n:70000
Cons ci ratio: 1.643353e-02	ci left: 4.446823e-01	ci right 4.520648e-01	k: 31386	n:70000
KS ci ratio: 1.030389e-01	ci left: 1.921237e-02	ci right 2.131337e-02	k: 1417	n:70000
SEMA3G   70000 perm   16 sec   (4393 perm/sec)   p_kst 2.024286e-02   p_cons 4.483714e-01   p_joint 3.017143e-02

Joint ci ratio: 8.821614e-02	ci left: 2.302386e-02	ci right 2.516084e-02	k: 1926	n:80000
Cons ci ratio: 1.539309e-02	ci left: 4.442499e-01	ci right 4.511538e-01	k: 35816	n:80000
KS ci ratio: 9.612927e-02	ci left: 1.938276e-02	ci right 2.135224e-02	k: 1628	n:80000
SEMA3G   80000 perm   19 sec   (4309 perm/sec)   p_kst 2.035000e-02   p_cons 4.477000e-01   p_joint 2.407500e-02

Outputting figure to mutsig2_images.part000000000154/SEMA3G.3_2413_80000_0.02035_0.4477_0.024075.png
                gene_name: SEMA3G
               theta_stop: 0.096 
                    nperm: 80000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.021 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.024 
     ci_joint_bounds_left: 0.023 
    ci_joint_bounds_right: 0.025 

Current progress: 62 percent done.
SENP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.406905e-02	ci left: 7.173453e-01	ci right 7.349227e-01	k: 7262	n:10000
Cons ci ratio: 4.237119e-02	ci left: 4.512924e-01	ci right 4.709303e-01	k: 4611	n:10000
KS ci ratio: 1.188309e-02	ci left: 9.102884e-01	ci right 9.212679e-01	k: 9159	n:10000
SENP1   10000 perm   2 sec   (5874 perm/sec)   p_kst 9.159000e-01   p_cons 4.611000e-01   p_joint 7.262000e-01

Outputting figure to mutsig2_images.part000000000154/SENP1.3_2000_10000_0.9159_0.4611_0.7262.png
                gene_name: SENP1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 63 percent done.
SENP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.414085e-02	ci left: 8.784825e-01	ci right 8.910923e-01	k: 8849	n:10000
Cons ci ratio: 1.945368e-02	ci left: 7.944581e-01	ci right 8.101654e-01	k: 8024	n:10000
KS ci ratio: 3.368349e-02	ci left: 5.654409e-01	ci right 5.849153e-01	k: 5752	n:10000
SENP2   10000 perm   2 sec   (5747 perm/sec)   p_kst 5.752000e-01   p_cons 8.024000e-01   p_joint 8.849000e-01

Outputting figure to mutsig2_images.part000000000154/SENP2.3_1838_10000_0.5752_0.8024_0.8849.png
                gene_name: SENP2
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 65 percent done.
SEPHS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.567934e-02	ci left: 6.906085e-01	ci right 7.086750e-01	k: 6997	n:10000
KS ci ratio: 2.261365e-02	ci left: 7.416944e-01	ci right 7.587596e-01	k: 7503	n:10000
SEPHS1   10000 perm   2 sec   (6165 perm/sec)   p_kst 7.503000e-01   p_cons 6.997000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000154/SEPHS1.3_1211_10000_0.7503_0.6997_1.png
                gene_name: SEPHS1
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
SEPT10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.860679e-03	ci left: 9.931864e-01	ci right 9.961140e-01	k: 9948	n:10000
KS ci ratio: 1.442374e-02	ci left: 8.742881e-01	ci right 8.870892e-01	k: 8808	n:10000
SEPT10   10000 perm   2 sec   (6245 perm/sec)   p_kst 8.808000e-01   p_cons 9.948000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000154/SEPT10.3_1409_10000_0.8808_0.9948_1.png
                gene_name: SEPT10
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 1.00 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 69 percent done.
SEPT7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.730686e-02	ci left: 8.295109e-01	ci right 8.440923e-01	k: 8369	n:10000
Cons ci ratio: 3.816527e-02	ci left: 5.034510e-01	ci right 5.231413e-01	k: 5133	n:10000
KS ci ratio: 1.619083e-02	ci left: 8.472320e-01	ci right 8.611609e-01	k: 8543	n:10000
SEPT7   10000 perm   2 sec   (6140 perm/sec)   p_kst 8.543000e-01   p_cons 5.133000e-01   p_joint 8.369000e-01

Outputting figure to mutsig2_images.part000000000154/SEPT7.3_1364_10000_0.8543_0.5133_0.8369.png
                gene_name: SEPT7
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 71 percent done.
SEC22A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.017199e-01	ci left: 1.226845e-01	ci right 1.359322e-01	k: 1292	n:10000
Cons ci ratio: 4.412626e-02	ci left: 4.312370e-01	ci right 4.507974e-01	k: 4410	n:10000
KS ci ratio: 8.991607e-02	ci left: 1.524718e-01	ci right 1.669270e-01	k: 1596	n:10000
SEC22A   10000 perm   2 sec   (6592 perm/sec)   p_kst 1.596000e-01   p_cons 4.410000e-01   p_joint 1.292000e-01

Joint ci ratio: 7.109371e-02	ci left: 1.272391e-01	ci right 1.366682e-01	k: 2638	n:20000
Cons ci ratio: 3.084652e-02	ci left: 4.397931e-01	ci right 4.536224e-01	k: 8934	n:20000
KS ci ratio: 6.327504e-02	ci left: 1.558816e-01	ci right 1.661172e-01	k: 3219	n:20000
SEC22A   20000 perm   3 sec   (5827 perm/sec)   p_kst 1.609500e-01   p_cons 4.467000e-01   p_joint 1.319000e-01

Outputting figure to mutsig2_images.part000000000154/SEC22A.2_948_20000_0.16095_0.4467_0.1319.png
                gene_name: SEC22A
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 73 percent done.
SEC24D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.158746e-02	ci left: 7.588910e-01	ci right 7.755531e-01	k: 7673	n:10000
KS ci ratio: 2.121886e-01	ci left: 2.949052e-02	ci right 3.658492e-02	k: 329	n:10000
SEC24D   10000 perm   2 sec   (5431 perm/sec)   p_kst 3.290000e-02   p_cons 7.673000e-01   p_joint 1

Joint ci ratio: 1.117562e-01	ci left: 5.470261e-02	ci right 6.122664e-02	k: 1158	n:20000
Cons ci ratio: 1.524113e-02	ci left: 7.619350e-01	ci right 7.736871e-01	k: 15357	n:20000
KS ci ratio: 1.528191e-01	ci left: 2.941145e-02	ci right 3.432589e-02	k: 636	n:20000
SEC24D   20000 perm   4 sec   (4849 perm/sec)   p_kst 3.180000e-02   p_cons 7.678500e-01   p_joint 5.790000e-02

Joint ci ratio: 1.116503e-01	ci left: 3.725903e-02	ci right 4.169739e-02	k: 1183	n:30000
Cons ci ratio: 1.230059e-02	ci left: 7.671761e-01	ci right 7.767046e-01	k: 23159	n:30000
KS ci ratio: 1.242077e-01	ci left: 3.013415e-02	ci right 3.415712e-02	k: 963	n:30000
SEC24D   30000 perm   6 sec   (4671 perm/sec)   p_kst 3.210000e-02   p_cons 7.719667e-01   p_joint 3.943333e-02

Joint ci ratio: 7.852228e-02	ci left: 5.634242e-02	ci right 6.097191e-02	k: 2345	n:40000
Cons ci ratio: 1.063724e-02	ci left: 7.683344e-01	ci right 7.765760e-01	k: 30899	n:40000
KS ci ratio: 1.066001e-01	ci left: 3.095424e-02	ci right 3.446403e-02	k: 1307	n:40000
SEC24D   40000 perm   9 sec   (4577 perm/sec)   p_kst 3.267500e-02   p_cons 7.724750e-01   p_joint 5.862500e-02

Joint ci ratio: 7.083112e-02	ci left: 5.567189e-02	ci right 5.977965e-02	k: 2885	n:50000
Cons ci ratio: 9.246854e-03	ci left: 7.786966e-01	ci right 7.859505e-01	k: 39117	n:50000
KS ci ratio: 9.657435e-02	ci left: 3.035735e-02	ci right 3.345731e-02	k: 1594	n:50000
SEC24D   50000 perm   11 sec   (4493 perm/sec)   p_kst 3.188000e-02   p_cons 7.823400e-01   p_joint 5.770000e-02

Outputting figure to mutsig2_images.part000000000154/SEC24D.2_3187_50000_0.03188_0.78234_0.0577.png
                gene_name: SEC24D
               theta_stop: 0.097 
                    nperm: 50000 
                     p_ks: 0.032 
        ci_ks_bounds_left: 0.030 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.058 
     ci_joint_bounds_left: 0.056 
    ci_joint_bounds_right: 0.060 

Current progress: 75 percent done.
SEC61A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.939847e-02	ci left: 7.953712e-01	ci right 8.110517e-01	k: 8033	n:10000
KS ci ratio: 3.321031e-02	ci left: 5.723604e-01	ci right 5.917917e-01	k: 5821	n:10000
SEC61A1   10000 perm   2 sec   (6199 perm/sec)   p_kst 5.821000e-01   p_cons 8.033000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000154/SEC61A1.2_1479_10000_0.5821_0.8033_1.png
                gene_name: SEC61A1
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
SEC61G
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.635571e-02	ci left: 2.500393e-01	ci right 2.673015e-01	k: 2586	n:10000
Cons ci ratio: 2.176266e-02	ci left: 7.559561e-01	ci right 7.726896e-01	k: 7644	n:10000
KS ci ratio: 1.647107e-01	ci left: 4.917009e-02	ci right 5.809220e-02	k: 535	n:10000
SEC61G   10000 perm   1 sec   (7101 perm/sec)   p_kst 5.350000e-02   p_cons 7.644000e-01   p_joint 2.586000e-01

Joint ci ratio: 4.779294e-02	ci left: 2.456472e-01	ci right 2.577251e-01	k: 5033	n:20000
Cons ci ratio: 1.533515e-02	ci left: 7.597161e-01	ci right 7.715066e-01	k: 15313	n:20000
KS ci ratio: 1.164133e-01	ci left: 5.051865e-02	ci right 5.681191e-02	k: 1072	n:20000
SEC61G   20000 perm   3 sec   (6218 perm/sec)   p_kst 5.360000e-02   p_cons 7.656500e-01   p_joint 2.516500e-01

Joint ci ratio: 3.889897e-02	ci left: 2.479556e-01	ci right 2.578256e-01	k: 7586	n:30000
Cons ci ratio: 1.255308e-02	ci left: 7.598914e-01	ci right 7.695240e-01	k: 22942	n:30000
KS ci ratio: 9.429574e-02	ci left: 5.189267e-02	ci right 5.706070e-02	k: 1633	n:30000
SEC61G   30000 perm   5 sec   (5796 perm/sec)   p_kst 5.443333e-02   p_cons 7.647333e-01   p_joint 2.528667e-01

Outputting figure to mutsig2_images.part000000000154/SEC61G.2_219_30000_0.054433_0.76473_0.25287.png
                gene_name: SEC61G
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.054 
        ci_ks_bounds_left: 0.052 
       ci_ks_bounds_right: 0.057 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 79 percent done.
SEC63
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.549612e-02	ci left: 5.395849e-01	ci right 5.591863e-01	k: 5494	n:10000
Cons ci ratio: 9.191022e-02	ci left: 1.467809e-01	ci right 1.610214e-01	k: 1538	n:10000
KS ci ratio: 9.977908e-02	ci left: 1.269892e-01	ci right 1.404250e-01	k: 1336	n:10000
SEC63   10000 perm   2 sec   (5997 perm/sec)   p_kst 1.336000e-01   p_cons 1.538000e-01   p_joint 5.494000e-01

Outputting figure to mutsig2_images.part000000000154/SEC63.2_2367_10000_0.1336_0.1538_0.5494.png
                gene_name: SEC63
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 81 percent done.
SECISBP2L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 1.623245e-01	ci left: 5.061180e-02	ci right 5.964956e-02	k: 550	n:10000
KS ci ratio: 1.481028e+00	ci left: 2.202202e-04	ci right 1.305486e-03	k: 6	n:10000
SECISBP2L   10000 perm   2 sec   (5666 perm/sec)   p_kst 6.000000e-04   p_cons 5.500000e-02   p_joint 0

Joint ci ratio: 1.181570e+00	ci left: 2.397946e-04	ci right 9.193249e-04	k: 10	n:20000
Cons ci ratio: 1.163560e-01	ci left: 5.056727e-02	ci right 5.686327e-02	k: 1073	n:20000
KS ci ratio: 1.047271e+00	ci left: 3.461416e-04	ci right 1.111263e-03	k: 13	n:20000
SECISBP2L   20000 perm   4 sec   (5069 perm/sec)   p_kst 6.500000e-04   p_cons 5.365000e-02   p_joint 5.000000e-04

Joint ci ratio: 1.481423e+00	ci left: 7.339990e-05	ci right 4.352646e-04	k: 6	n:30000
Cons ci ratio: 9.402220e-02	ci left: 5.218599e-02	ci right 5.736733e-02	k: 1642	n:30000
KS ci ratio: 7.836602e-01	ci left: 5.126402e-04	ci right 1.190104e-03	k: 24	n:30000
SECISBP2L   30000 perm   6 sec   (4834 perm/sec)   p_kst 8.000000e-04   p_cons 5.473333e-02   p_joint 2.000000e-04

Joint ci ratio: 1.600193e+00	ci left: 4.058837e-05	ci right 2.916840e-04	k: 5	n:40000
Cons ci ratio: 8.207532e-02	ci left: 5.173146e-02	ci right 5.618357e-02	k: 2157	n:40000
KS ci ratio: 6.530311e-01	ci left: 6.095429e-04	ci right 1.216705e-03	k: 35	n:40000
SECISBP2L   40000 perm   9 sec   (4676 perm/sec)   p_kst 8.750000e-04   p_cons 5.392500e-02   p_joint 1.250000e-04

Joint ci ratio: 1.087060e+00	ci left: 1.240175e-04	ci right 4.191941e-04	k: 12	n:50000
Cons ci ratio: 7.317430e-02	ci left: 5.229034e-02	ci right 5.628161e-02	k: 2713	n:50000
KS ci ratio: 5.655260e-01	ci left: 6.907559e-04	ci right 1.249807e-03	k: 47	n:50000
SECISBP2L   50000 perm   11 sec   (4553 perm/sec)   p_kst 9.400000e-04   p_cons 5.426000e-02   p_joint 2.400000e-04

Joint ci ratio: 1.481522e+00	ci left: 3.669909e-05	ci right 2.176451e-04	k: 6	n:60000
Cons ci ratio: 6.658074e-02	ci left: 5.279532e-02	ci right 5.644791e-02	k: 3276	n:60000
KS ci ratio: 5.382111e-01	ci left: 6.473338e-04	ci right 1.136365e-03	k: 52	n:60000
SECISBP2L   60000 perm   14 sec   (4435 perm/sec)   p_kst 8.666667e-04   p_cons 5.460000e-02   p_joint 1.000000e-04

Joint ci ratio: 9.506174e-01	ci left: 1.306538e-04	ci right 3.711592e-04	k: 16	n:70000
Cons ci ratio: 6.160067e-02	ci left: 5.299866e-02	ci right 5.638123e-02	k: 3827	n:70000
KS ci ratio: 5.101218e-01	ci left: 6.292273e-04	ci right 1.070991e-03	k: 58	n:70000
SECISBP2L   70000 perm   16 sec   (4342 perm/sec)   p_kst 8.285714e-04   p_cons 5.467143e-02   p_joint 2.285714e-04

Joint ci ratio: 8.991973e-01	ci left: 1.333545e-04	ci right 3.555738e-04	k: 18	n:80000
Cons ci ratio: 5.753084e-02	ci left: 5.326982e-02	ci right 5.643756e-02	k: 4387	n:80000
KS ci ratio: 4.976444e-01	ci left: 5.833007e-04	ci right 9.793569e-04	k: 61	n:80000
SECISBP2L   80000 perm   19 sec   (4266 perm/sec)   p_kst 7.625000e-04   p_cons 5.483750e-02   p_joint 2.250000e-04

Joint ci ratio: 1.012050e+00	ci left: 8.504620e-05	ci right 2.609820e-04	k: 14	n:90000
Cons ci ratio: 5.444220e-02	ci left: 5.298190e-02	ci right 5.595801e-02	k: 4901	n:90000
KS ci ratio: 4.823390e-01	ci left: 5.574387e-04	ci right 9.204402e-04	k: 65	n:90000
SECISBP2L   90000 perm   22 sec   (4179 perm/sec)   p_kst 7.222222e-04   p_cons 5.445556e-02   p_joint 1.555556e-04

Joint ci ratio: 9.799167e-01	ci left: 8.395621e-05	ci right 2.473901e-04	k: 15	n:100000
Cons ci ratio: 5.161170e-02	ci left: 5.313063e-02	ci right 5.595528e-02	k: 5453	n:100000
KS ci ratio: 4.555198e-01	ci left: 5.722458e-04	ci right 9.177792e-04	k: 73	n:100000
SECISBP2L   100000 perm   24 sec   (4113 perm/sec)   p_kst 7.300000e-04   p_cons 5.453000e-02   p_joint 1.500000e-04

Joint ci ratio: 9.238731e-01	ci left: 9.003092e-05	ci right 2.474308e-04	k: 17	n:110000
Cons ci ratio: 4.924632e-02	ci left: 5.312082e-02	ci right 5.581182e-02	k: 5990	n:110000
KS ci ratio: 4.353932e-01	ci left: 5.767229e-04	ci right 9.050733e-04	k: 80	n:110000
SECISBP2L   110000 perm   27 sec   (4050 perm/sec)   p_kst 7.272727e-04   p_cons 5.445455e-02   p_joint 1.545455e-04

Joint ci ratio: 6.625015e-01	ci left: 1.962243e-04	ci right 3.959076e-04	k: 34	n:120000
Cons ci ratio: 4.707227e-02	ci left: 5.334586e-02	ci right 5.592571e-02	k: 6555	n:120000
KS ci ratio: 4.177184e-01	ci left: 5.807348e-04	ci right 8.942091e-04	k: 87	n:120000
SECISBP2L   120000 perm   30 sec   (3989 perm/sec)   p_kst 7.250000e-04   p_cons 5.462500e-02   p_joint 2.833333e-04

Joint ci ratio: 8.992405e-01	ci left: 8.206308e-05	ci right 2.188201e-04	k: 18	n:130000
Cons ci ratio: 4.539259e-02	ci left: 5.302100e-02	ci right 5.549124e-02	k: 7052	n:130000
KS ci ratio: 3.899015e-01	ci left: 6.259193e-04	ci right 9.355129e-04	k: 100	n:130000
SECISBP2L   130000 perm   33 sec   (3919 perm/sec)   p_kst 7.692308e-04   p_cons 5.424615e-02   p_joint 1.384615e-04

Joint ci ratio: 8.992454e-01	ci left: 7.620130e-05	ci right 2.031907e-04	k: 18	n:140000
Cons ci ratio: 4.379795e-02	ci left: 5.293485e-02	ci right 5.531223e-02	k: 7576	n:140000
KS ci ratio: 3.686124e-01	ci left: 6.587617e-04	ci right 9.625296e-04	k: 112	n:140000
SECISBP2L   140000 perm   36 sec   (3860 perm/sec)   p_kst 8.000000e-04   p_cons 5.411429e-02   p_joint 1.285714e-04

Joint ci ratio: 8.764773e-01	ci left: 7.626328e-05	ci right 1.977987e-04	k: 19	n:150000
Cons ci ratio: 4.231068e-02	ci left: 5.298031e-02	ci right 5.527696e-02	k: 8118	n:150000
KS ci ratio: 3.562187e-01	ci left: 6.633226e-04	ci right 9.565290e-04	k: 120	n:150000
SECISBP2L   150000 perm   39 sec   (3803 perm/sec)   p_kst 8.000000e-04   p_cons 5.412000e-02   p_joint 1.266667e-04

Joint ci ratio: 8.001041e-01	ci left: 9.112728e-05	ci right 2.156878e-04	k: 23	n:160000
Cons ci ratio: 4.088304e-02	ci left: 5.322554e-02	ci right 5.545314e-02	k: 8693	n:160000
KS ci ratio: 3.477046e-01	ci left: 6.560496e-04	ci right 9.375487e-04	k: 126	n:160000
SECISBP2L   160000 perm   43 sec   (3748 perm/sec)   p_kst 7.875000e-04   p_cons 5.433125e-02   p_joint 1.437500e-04

Joint ci ratio: 7.839400e-01	ci left: 9.045646e-05	ci right 2.100522e-04	k: 24	n:170000
Cons ci ratio: 3.971098e-02	ci left: 5.313422e-02	ci right 5.529278e-02	k: 9215	n:170000
KS ci ratio: 3.423590e-01	ci left: 6.389481e-04	ci right 9.079611e-04	k: 130	n:170000
SECISBP2L   170000 perm   46 sec   (3696 perm/sec)   p_kst 7.647059e-04   p_cons 5.420588e-02   p_joint 1.411765e-04

Joint ci ratio: 7.543457e-01	ci left: 9.435801e-05	ci right 2.116375e-04	k: 26	n:180000
Cons ci ratio: 3.863217e-02	ci left: 5.305937e-02	ci right 5.515502e-02	k: 9738	n:180000
KS ci ratio: 3.360093e-01	ci left: 6.288625e-04	ci right 8.876546e-04	k: 135	n:180000
SECISBP2L   180000 perm   49 sec   (3644 perm/sec)   p_kst 7.500000e-04   p_cons 5.410000e-02   p_joint 1.444444e-04

Joint ci ratio: 7.039935e-01	ci left: 1.065334e-04	ci right 2.253969e-04	k: 30	n:190000
Cons ci ratio: 3.761352e-02	ci left: 5.305571e-02	ci right 5.509476e-02	k: 10273	n:190000
KS ci ratio: 3.254132e-01	ci left: 6.392016e-04	ci right 8.922217e-04	k: 144	n:190000
SECISBP2L   190000 perm   53 sec   (3594 perm/sec)   p_kst 7.578947e-04   p_cons 5.406842e-02   p_joint 1.578947e-04

Joint ci ratio: 1.012099e+00	ci left: 3.827016e-05	ci right 1.174453e-04	k: 14	n:200000
Cons ci ratio: 3.663023e-02	ci left: 5.316708e-02	ci right 5.515587e-02	k: 10831	n:200000
KS ci ratio: 3.178323e-01	ci left: 6.394166e-04	ci right 8.854264e-04	k: 151	n:200000
SECISBP2L   200000 perm   56 sec   (3546 perm/sec)   p_kst 7.550000e-04   p_cons 5.415500e-02   p_joint 7.000000e-05

Joint ci ratio: 9.799603e-01	ci left: 3.997856e-05	ci right 1.178078e-04	k: 15	n:210000
Cons ci ratio: 3.579839e-02	ci left: 5.304655e-02	ci right 5.498483e-02	k: 11342	n:210000
KS ci ratio: 3.137338e-01	ci left: 6.265056e-04	ci right 8.638167e-04	k: 155	n:210000
SECISBP2L   210000 perm   60 sec   (3499 perm/sec)   p_kst 7.380952e-04   p_cons 5.400952e-02   p_joint 7.142857e-05

Joint ci ratio: 9.799621e-01	ci left: 3.816133e-05	ci right 1.124531e-04	k: 15	n:220000
Cons ci ratio: 3.497400e-02	ci left: 5.307268e-02	ci right 5.496636e-02	k: 11883	n:220000
KS ci ratio: 2.996527e-01	ci left: 6.609678e-04	ci right 8.979595e-04	k: 170	n:220000
SECISBP2L   220000 perm   64 sec   (3453 perm/sec)   p_kst 7.727273e-04   p_cons 5.401364e-02   p_joint 6.818182e-05

Joint ci ratio: 9.507024e-01	ci left: 3.976304e-05	ci right 1.129671e-04	k: 16	n:230000
Cons ci ratio: 3.423757e-02	ci left: 5.299782e-02	ci right 5.484823e-02	k: 12401	n:230000
KS ci ratio: 2.912560e-01	ci left: 6.724873e-04	ci right 9.056079e-04	k: 180	n:230000
SECISBP2L   230000 perm   67 sec   (3408 perm/sec)   p_kst 7.826087e-04   p_cons 5.391739e-02   p_joint 6.956522e-05

Joint ci ratio: 9.507040e-01	ci left: 3.810623e-05	ci right 1.082602e-04	k: 16	n:240000
Cons ci ratio: 3.349512e-02	ci left: 5.308253e-02	ci right 5.489493e-02	k: 12956	n:240000
KS ci ratio: 2.873163e-01	ci left: 6.637884e-04	ci right 8.902157e-04	k: 185	n:240000
SECISBP2L   240000 perm   71 sec   (3365 perm/sec)   p_kst 7.708333e-04   p_cons 5.398333e-02   p_joint 6.666667e-05

Joint ci ratio: 9.507054e-01	ci left: 3.658196e-05	ci right 1.039299e-04	k: 16	n:250000
Cons ci ratio: 3.277332e-02	ci left: 5.324024e-02	ci right 5.501811e-02	k: 13531	n:250000
KS ci ratio: 2.777703e-01	ci left: 6.855547e-04	ci right 9.102794e-04	k: 198	n:250000
SECISBP2L   250000 perm   75 sec   (3322 perm/sec)   p_kst 7.920000e-04   p_cons 5.412400e-02   p_joint 6.400000e-05

Joint ci ratio: 9.239191e-01	ci left: 3.808939e-05	ci right 1.046850e-04	k: 17	n:260000
Cons ci ratio: 3.212637e-02	ci left: 5.329078e-02	ci right 5.503456e-02	k: 14081	n:260000
KS ci ratio: 2.757025e-01	ci left: 6.699242e-04	ci right 8.876070e-04	k: 201	n:260000
SECISBP2L   260000 perm   79 sec   (3280 perm/sec)   p_kst 7.730769e-04   p_cons 5.415769e-02   p_joint 6.538462e-05

Joint ci ratio: 1.131579e+00	ci left: 2.033780e-05	ci right 7.289527e-05	k: 11	n:270000
Cons ci ratio: 3.148784e-02	ci left: 5.342980e-02	ci right 5.514275e-02	k: 14656	n:270000
KS ci ratio: 2.684875e-01	ci left: 6.830748e-04	ci right 8.982447e-04	k: 212	n:270000
SECISBP2L   270000 perm   83 sec   (3240 perm/sec)   p_kst 7.851852e-04   p_cons 5.428148e-02   p_joint 4.074074e-05

Joint ci ratio: 1.047636e+00	ci left: 2.472148e-05	ci right 7.939296e-05	k: 13	n:280000
Cons ci ratio: 3.091706e-02	ci left: 5.345638e-02	ci right 5.513857e-02	k: 15202	n:280000
KS ci ratio: 2.618108e-01	ci left: 6.953548e-04	ci right 9.080544e-04	k: 223	n:280000
SECISBP2L   280000 perm   87 sec   (3201 perm/sec)   p_kst 7.964286e-04   p_cons 5.429286e-02   p_joint 4.642857e-05

Joint ci ratio: 1.047637e+00	ci left: 2.386901e-05	ci right 7.665532e-05	k: 13	n:290000
Cons ci ratio: 3.041404e-02	ci left: 5.335473e-02	ci right 5.500592e-02	k: 15711	n:290000
KS ci ratio: 2.550660e-01	ci left: 7.100771e-04	ci right 9.207947e-04	k: 235	n:290000
SECISBP2L   290000 perm   92 sec   (3163 perm/sec)   p_kst 8.103448e-04   p_cons 5.417586e-02   p_joint 4.482759e-05

Joint ci ratio: 1.047638e+00	ci left: 2.307337e-05	ci right 7.410018e-05	k: 13	n:300000
Cons ci ratio: 2.988612e-02	ci left: 5.342555e-02	ci right 5.504974e-02	k: 16270	n:300000
KS ci ratio: 2.513658e-01	ci left: 7.082605e-04	ci right 9.149127e-04	k: 242	n:300000
SECISBP2L   300000 perm   96 sec   (3126 perm/sec)   p_kst 8.066667e-04   p_cons 5.423333e-02   p_joint 4.333333e-05

Joint ci ratio: 1.012114e+00	ci left: 2.469031e-05	ci right 7.577181e-05	k: 14	n:310000
Cons ci ratio: 2.941343e-02	ci left: 5.339273e-02	ci right 5.498981e-02	k: 16798	n:310000
KS ci ratio: 2.444211e-01	ci left: 7.277707e-04	ci right 9.333587e-04	k: 256	n:310000
SECISBP2L   310000 perm   100 sec   (3090 perm/sec)   p_kst 8.258065e-04   p_cons 5.418710e-02   p_joint 4.516129e-05

Joint ci ratio: 1.012114e+00	ci left: 2.391873e-05	ci right 7.340398e-05	k: 14	n:320000
Cons ci ratio: 2.895894e-02	ci left: 5.337456e-02	ci right 5.494602e-02	k: 17330	n:320000
KS ci ratio: 2.389058e-01	ci left: 7.402580e-04	ci right 9.439567e-04	k: 268	n:320000
SECISBP2L   320000 perm   105 sec   (3055 perm/sec)   p_kst 8.375000e-04   p_cons 5.415625e-02   p_joint 4.375000e-05

Joint ci ratio: 1.012115e+00	ci left: 2.319392e-05	ci right 7.117965e-05	k: 14	n:330000
Cons ci ratio: 2.848361e-02	ci left: 5.350516e-02	ci right 5.505419e-02	k: 17911	n:330000
KS ci ratio: 2.371507e-01	ci left: 7.292238e-04	ci right 9.281954e-04	k: 272	n:330000
SECISBP2L   330000 perm   109 sec   (3021 perm/sec)   p_kst 8.242424e-04   p_cons 5.427576e-02   p_joint 4.242424e-05

Joint ci ratio: 9.799755e-01	ci left: 2.469252e-05	ci right 7.276431e-05	k: 15	n:340000
Cons ci ratio: 2.802613e-02	ci left: 5.364581e-02	ci right 5.517356e-02	k: 18498	n:340000
KS ci ratio: 2.329225e-01	ci left: 7.354563e-04	ci right 9.320357e-04	k: 282	n:340000
SECISBP2L   340000 perm   114 sec   (2987 perm/sec)   p_kst 8.294118e-04   p_cons 5.440588e-02   p_joint 4.411765e-05

Joint ci ratio: 9.507152e-01	ci left: 2.612988e-05	ci right 7.423608e-05	k: 16	n:350000
Cons ci ratio: 2.765365e-02	ci left: 5.354301e-02	ci right 5.504724e-02	k: 19002	n:350000
KS ci ratio: 2.293046e-01	ci left: 7.386690e-04	ci right 9.326063e-04	k: 291	n:350000
SECISBP2L   350000 perm   118 sec   (2955 perm/sec)   p_kst 8.314286e-04   p_cons 5.429143e-02   p_joint 4.571429e-05

Joint ci ratio: 4.466771e-01	ci left: 1.663350e-04	ci right 2.642300e-04	k: 76	n:360000
Cons ci ratio: 2.104304e-02	ci left: 8.699358e-02	ci right 8.884639e-02	k: 31650	n:360000
KS ci ratio: 2.247322e-01	ci left: 7.495888e-04	ci right 9.419256e-04	k: 303	n:360000
SECISBP2L   360000 perm   123 sec   (2920 perm/sec)   p_kst 8.416667e-04   p_cons 8.791667e-02   p_joint 2.111111e-04

Joint ci ratio: 4.382213e-01	ci left: 1.690442e-04	ci right 2.660945e-04	k: 79	n:370000
Cons ci ratio: 2.075784e-02	ci left: 8.699760e-02	ci right 8.882508e-02	k: 32526	n:370000
KS ci ratio: 2.211242e-01	ci left: 7.548478e-04	ci right 9.450015e-04	k: 313	n:370000
SECISBP2L   370000 perm   128 sec   (2886 perm/sec)   p_kst 8.459459e-04   p_cons 8.790811e-02   p_joint 2.135135e-04

Joint ci ratio: 4.355086e-01	ci left: 1.669377e-04	ci right 2.620115e-04	k: 80	n:380000
Cons ci ratio: 2.049033e-02	ci left: 8.695179e-02	ci right 8.875450e-02	k: 33383	n:380000
KS ci ratio: 2.193854e-01	ci left: 7.474151e-04	ci right 9.340161e-04	k: 318	n:380000
SECISBP2L   380000 perm   133 sec   (2856 perm/sec)   p_kst 8.368421e-04   p_cons 8.785000e-02   p_joint 2.105263e-04

Joint ci ratio: 6.048358e-01	ci left: 7.544284e-05	ci right 1.426156e-04	k: 41	n:390000
Cons ci ratio: 2.022416e-02	ci left: 8.697740e-02	ci right 8.875694e-02	k: 34267	n:390000
KS ci ratio: 2.176870e-01	ci left: 7.403691e-04	ci right 9.235886e-04	k: 323	n:390000
SECISBP2L   390000 perm   138 sec   (2826 perm/sec)   p_kst 8.282051e-04   p_cons 8.786410e-02   p_joint 1.051282e-04

Joint ci ratio: 6.048366e-01	ci left: 7.355674e-05	ci right 1.390503e-04	k: 41	n:400000
Cons ci ratio: 1.997214e-02	ci left: 8.696951e-02	ci right 8.872646e-02	k: 35138	n:400000
KS ci ratio: 2.153733e-01	ci left: 7.384108e-04	ci right 9.189466e-04	k: 330	n:400000
SECISBP2L   400000 perm   143 sec   (2798 perm/sec)   p_kst 8.250000e-04   p_cons 8.784500e-02   p_joint 1.025000e-04

Joint ci ratio: 6.048374e-01	ci left: 7.176265e-05	ci right 1.356589e-04	k: 41	n:410000
Cons ci ratio: 1.974285e-02	ci left: 8.685288e-02	ci right 8.858710e-02	k: 35964	n:410000
KS ci ratio: 2.137656e-01	ci left: 7.319403e-04	ci right 9.093831e-04	k: 335	n:410000
SECISBP2L   410000 perm   148 sec   (2770 perm/sec)   p_kst 8.170732e-04   p_cons 8.771707e-02   p_joint 1.000000e-04

Joint ci ratio: 6.048382e-01	ci left: 7.005400e-05	ci right 1.324290e-04	k: 41	n:420000
Cons ci ratio: 1.951371e-02	ci left: 8.680354e-02	ci right 8.851644e-02	k: 36816	n:420000
KS ci ratio: 2.125055e-01	ci left: 7.235283e-04	ci right 8.977631e-04	k: 339	n:420000
SECISBP2L   420000 perm   153 sec   (2740 perm/sec)   p_kst 8.071429e-04   p_cons 8.765714e-02   p_joint 9.761905e-05

Joint ci ratio: 6.048389e-01	ci left: 6.842481e-05	ci right 1.293493e-04	k: 41	n:430000
Cons ci ratio: 1.929069e-02	ci left: 8.677051e-02	ci right 8.846296e-02	k: 37674	n:430000
KS ci ratio: 2.097474e-01	ci left: 7.265258e-04	ci right 8.989199e-04	k: 348	n:430000
SECISBP2L   430000 perm   159 sec   (2712 perm/sec)   p_kst 8.093023e-04   p_cons 8.761395e-02   p_joint 9.534884e-05

Joint ci ratio: 5.843286e-01	ci left: 7.266106e-05	ci right 1.342430e-04	k: 44	n:440000
Cons ci ratio: 1.907894e-02	ci left: 8.670740e-02	ci right 8.837986e-02	k: 38518	n:440000
KS ci ratio: 2.070939e-01	ci left: 7.294010e-04	ci right 9.000104e-04	k: 357	n:440000
SECISBP2L   440000 perm   164 sec   (2683 perm/sec)   p_kst 8.113636e-04   p_cons 8.754091e-02   p_joint 1.000000e-04

Joint ci ratio: 5.779423e-01	ci left: 7.294159e-05	ci right 1.338056e-04	k: 45	n:450000
Cons ci ratio: 1.887244e-02	ci left: 8.666047e-02	ci right 8.831373e-02	k: 39368	n:450000
KS ci ratio: 2.059475e-01	ci left: 7.216209e-04	ci right 8.893585e-04	k: 361	n:450000
SECISBP2L   450000 perm   169 sec   (2655 perm/sec)   p_kst 8.022222e-04   p_cons 8.748444e-02   p_joint 1.000000e-04

Joint ci ratio: 5.657731e-01	ci left: 7.507448e-05	ci right 1.358674e-04	k: 47	n:460000
Cons ci ratio: 1.866665e-02	ci left: 8.666547e-02	ci right 8.830060e-02	k: 40241	n:460000
KS ci ratio: 2.045405e-01	ci left: 7.162443e-04	ci right 8.814524e-04	k: 366	n:460000
SECISBP2L   460000 perm   175 sec   (2628 perm/sec)   p_kst 7.956522e-04   p_cons 8.748043e-02   p_joint 1.021739e-04

Joint ci ratio: 5.657738e-01	ci left: 7.347713e-05	ci right 1.329766e-04	k: 47	n:470000
Cons ci ratio: 1.846795e-02	ci left: 8.666611e-02	ci right 8.828366e-02	k: 41112	n:470000
KS ci ratio: 2.026175e-01	ci left: 7.151394e-04	ci right 8.783500e-04	k: 373	n:470000
SECISBP2L   470000 perm   181 sec   (2602 perm/sec)   p_kst 7.936170e-04   p_cons 8.747234e-02   p_joint 1.000000e-04

Joint ci ratio: 3.880962e-01	ci left: 1.713910e-04	ci right 2.556695e-04	k: 101	n:480000
Cons ci ratio: 1.827355e-02	ci left: 8.668341e-02	ci right 8.828408e-02	k: 41991	n:480000
KS ci ratio: 1.991842e-01	ci left: 7.259621e-04	ci right 8.884943e-04	k: 386	n:480000
SECISBP2L   480000 perm   186 sec   (2576 perm/sec)   p_kst 8.041667e-04   p_cons 8.748125e-02   p_joint 2.104167e-04

Joint ci ratio: 2.240213e-01	ci left: 5.545641e-04	ci right 6.963467e-04	k: 305	n:490000
Cons ci ratio: 1.809117e-02	ci left: 8.664724e-02	ci right 8.823111e-02	k: 42844	n:490000
KS ci ratio: 1.966592e-01	ci left: 7.305436e-04	ci right 8.917798e-04	k: 396	n:490000
SECISBP2L   490000 perm   192 sec   (2551 perm/sec)   p_kst 8.081633e-04   p_cons 8.743673e-02   p_joint 6.224490e-04

Joint ci ratio: 1.818968e-01	ci left: 8.435971e-04	ci right 1.014271e-03	k: 463	n:500000
Cons ci ratio: 1.791325e-02	ci left: 8.662057e-02	ci right 8.818822e-02	k: 43701	n:500000
KS ci ratio: 1.937520e-01	ci left: 7.387601e-04	ci right 8.991152e-04	k: 408	n:500000
SECISBP2L   500000 perm   198 sec   (2527 perm/sec)   p_kst 8.160000e-04   p_cons 8.740200e-02   p_joint 9.260000e-04

Joint ci ratio: 1.795889e-01	ci left: 8.495212e-04	ci right 1.018976e-03	k: 475	n:510000
Cons ci ratio: 1.774353e-02	ci left: 8.656768e-02	ci right 8.811937e-02	k: 44544	n:510000
KS ci ratio: 1.911975e-01	ci left: 7.448042e-04	ci right 9.040919e-04	k: 419	n:510000
SECISBP2L   510000 perm   204 sec   (2502 perm/sec)   p_kst 8.215686e-04   p_cons 8.734118e-02   p_joint 9.313725e-04

Joint ci ratio: 1.786538e-01	ci left: 8.423682e-04	ci right 1.009427e-03	k: 480	n:520000
Cons ci ratio: 1.757027e-02	ci left: 8.659159e-02	ci right 8.812840e-02	k: 45426	n:520000
KS ci ratio: 1.902942e-01	ci left: 7.378058e-04	ci right 8.947651e-04	k: 423	n:520000
SECISBP2L   520000 perm   210 sec   (2479 perm/sec)   p_kst 8.134615e-04   p_cons 8.735769e-02   p_joint 9.230769e-04

Joint ci ratio: 1.779164e-01	ci left: 8.336845e-04	ci right 9.982649e-04	k: 484	n:530000
Cons ci ratio: 1.739973e-02	ci left: 8.663534e-02	ci right 8.815785e-02	k: 46319	n:530000
KS ci ratio: 1.894037e-01	ci left: 7.310731e-04	ci right 8.857885e-04	k: 427	n:530000
SECISBP2L   530000 perm   216 sec   (2456 perm/sec)   p_kst 8.056604e-04   p_cons 8.739434e-02   p_joint 9.132075e-04

Joint ci ratio: 1.770070e-01	ci left: 8.270936e-04	ci right 9.894490e-04	k: 489	n:540000
Cons ci ratio: 1.723166e-02	ci left: 8.669967e-02	ci right 8.820846e-02	k: 47224	n:540000
KS ci ratio: 1.889637e-01	ci left: 7.210627e-04	ci right 8.732644e-04	k: 429	n:540000
SECISBP2L   540000 perm   222 sec   (2434 perm/sec)   p_kst 7.944444e-04   p_cons 8.745185e-02   p_joint 9.055556e-04

Joint ci ratio: 1.752279e-01	ci left: 8.294360e-04	ci right 9.904414e-04	k: 499	n:550000
Cons ci ratio: 1.707732e-02	ci left: 8.667843e-02	ci right 8.817320e-02	k: 48083	n:550000
KS ci ratio: 1.870165e-01	ci left: 7.235461e-04	ci right 8.745196e-04	k: 438	n:550000
SECISBP2L   550000 perm   228 sec   (2412 perm/sec)   p_kst 7.963636e-04   p_cons 8.742364e-02   p_joint 9.072727e-04

Joint ci ratio: 1.736718e-01	ci left: 8.299943e-04	ci right 9.895274e-04	k: 508	n:560000
Cons ci ratio: 1.692269e-02	ci left: 8.669891e-02	ci right 8.818036e-02	k: 48965	n:560000
KS ci ratio: 1.853355e-01	ci left: 7.242455e-04	ci right 8.738539e-04	k: 446	n:560000
SECISBP2L   560000 perm   234 sec   (2391 perm/sec)   p_kst 7.964286e-04   p_cons 8.743750e-02   p_joint 9.071429e-04

Joint ci ratio: 1.726576e-01	ci left: 8.255030e-04	ci right 9.831496e-04	k: 514	n:570000
Cons ci ratio: 1.676665e-02	ci left: 8.677116e-02	ci right 8.824005e-02	k: 49877	n:570000
KS ci ratio: 1.843080e-01	ci left: 7.199054e-04	ci right 8.677007e-04	k: 451	n:570000
SECISBP2L   570000 perm   241 sec   (2370 perm/sec)   p_kst 7.912281e-04   p_cons 8.750351e-02   p_joint 9.017544e-04

Joint ci ratio: 1.711685e-01	ci left: 8.261197e-04	ci right 9.823830e-04	k: 523	n:580000
Cons ci ratio: 1.662473e-02	ci left: 8.674652e-02	ci right 8.820244e-02	k: 50734	n:580000
KS ci ratio: 1.828974e-01	ci left: 7.190075e-04	ci right 8.653634e-04	k: 458	n:580000
SECISBP2L   580000 perm   247 sec   (2350 perm/sec)   p_kst 7.896552e-04   p_cons 8.747241e-02   p_joint 9.017241e-04

Joint ci ratio: 1.692411e-01	ci left: 8.315905e-04	ci right 9.869368e-04	k: 535	n:590000
Cons ci ratio: 1.648302e-02	ci left: 8.675484e-02	ci right 8.819837e-02	k: 51610	n:590000
KS ci ratio: 1.807439e-01	ci left: 7.246167e-04	ci right 8.701877e-04	k: 469	n:590000
SECISBP2L   590000 perm   253 sec   (2330 perm/sec)   p_kst 7.949153e-04   p_cons 8.747458e-02   p_joint 9.067797e-04

Joint ci ratio: 1.670726e-01	ci left: 8.400824e-04	ci right 9.948018e-04	k: 549	n:600000
Cons ci ratio: 1.634095e-02	ci left: 8.680113e-02	ci right 8.823286e-02	k: 52509	n:600000
KS ci ratio: 1.784792e-01	ci left: 7.316408e-04	ci right 8.765825e-04	k: 481	n:600000
SECISBP2L   600000 perm   260 sec   (2310 perm/sec)   p_kst 8.016667e-04   p_cons 8.751500e-02   p_joint 9.150000e-04

Joint ci ratio: 1.655740e-01	ci left: 8.420217e-04	ci right 9.955687e-04	k: 559	n:610000
Cons ci ratio: 1.620748e-02	ci left: 8.679695e-02	ci right 8.821681e-02	k: 53378	n:610000
KS ci ratio: 1.766558e-01	ci left: 7.353117e-04	ci right 8.793334e-04	k: 491	n:610000
SECISBP2L   610000 perm   266 sec   (2291 perm/sec)   p_kst 8.049180e-04   p_cons 8.750492e-02   p_joint 9.163934e-04

Joint ci ratio: 1.638277e-01	ci left: 8.469979e-04	ci right 9.996628e-04	k: 571	n:620000
Cons ci ratio: 1.607966e-02	ci left: 8.676884e-02	ci right 8.817695e-02	k: 54232	n:620000
KS ci ratio: 1.747131e-01	ci left: 7.404138e-04	ci right 8.836717e-04	k: 502	n:620000
SECISBP2L   620000 perm   273 sec   (2272 perm/sec)   p_kst 8.096774e-04   p_cons 8.747097e-02   p_joint 9.209677e-04

Joint ci ratio: 1.625539e-01	ci left: 8.472558e-04	ci right 9.986638e-04	k: 580	n:630000
Cons ci ratio: 1.595593e-02	ci left: 8.673060e-02	ci right 8.812716e-02	k: 55079	n:630000
KS ci ratio: 1.731706e-01	ci left: 7.423250e-04	ci right 8.845522e-04	k: 511	n:630000
SECISBP2L   630000 perm   280 sec   (2253 perm/sec)   p_kst 8.111111e-04   p_cons 8.742698e-02   p_joint 9.206349e-04

Joint ci ratio: 1.613093e-01	ci left: 8.475101e-04	ci right 9.976916e-04	k: 589	n:640000
Cons ci ratio: 1.583549e-02	ci left: 8.668893e-02	ci right 8.807418e-02	k: 55923	n:640000
KS ci ratio: 1.719990e-01	ci left: 7.411912e-04	ci right 8.821406e-04	k: 518	n:640000
SECISBP2L   640000 perm   286 sec   (2235 perm/sec)   p_kst 8.093750e-04   p_cons 8.737969e-02   p_joint 9.203125e-04

Joint ci ratio: 1.598261e-01	ci left: 8.507147e-04	ci right 9.999448e-04	k: 600	n:650000
Cons ci ratio: 1.570303e-02	ci left: 8.679728e-02	ci right 8.817255e-02	k: 56864	n:650000
KS ci ratio: 1.703653e-01	ci left: 7.445138e-04	ci right 8.846122e-04	k: 528	n:650000
SECISBP2L   650000 perm   293 sec   (2216 perm/sec)   p_kst 8.123077e-04   p_cons 8.748308e-02   p_joint 9.230769e-04

Joint ci ratio: 1.589036e-01	ci left: 8.480080e-04	ci right 9.958230e-04	k: 607	n:660000
Cons ci ratio: 1.558418e-02	ci left: 8.679670e-02	ci right 8.816147e-02	k: 57735	n:660000
KS ci ratio: 1.692493e-01	ci left: 7.433886e-04	ci right 8.822654e-04	k: 535	n:660000
SECISBP2L   660000 perm   300 sec   (2198 perm/sec)   p_kst 8.106061e-04   p_cons 8.747727e-02   p_joint 9.196970e-04

Joint ci ratio: 1.581257e-01	ci left: 8.439511e-04	ci right 9.902703e-04	k: 613	n:670000
Cons ci ratio: 1.547233e-02	ci left: 8.675156e-02	ci right 8.810574e-02	k: 58576	n:670000
KS ci ratio: 1.683102e-01	ci left: 7.408701e-04	ci right 8.784305e-04	k: 541	n:670000
SECISBP2L   670000 perm   307 sec   (2180 perm/sec)   p_kst 8.074627e-04   p_cons 8.742687e-02   p_joint 9.149254e-04

Joint ci ratio: 1.572322e-01	ci left: 8.414279e-04	ci right 9.864076e-04	k: 620	n:680000
Cons ci ratio: 1.535182e-02	ci left: 8.682209e-02	ci right 8.816672e-02	k: 59495	n:680000
KS ci ratio: 1.673865e-01	ci left: 7.384278e-04	ci right 8.747064e-04	k: 547	n:680000
SECISBP2L   680000 perm   314 sec   (2163 perm/sec)   p_kst 8.044118e-04   p_cons 8.749265e-02   p_joint 9.117647e-04

Joint ci ratio: 1.559813e-01	ci left: 8.431581e-04	ci right 9.871720e-04	k: 630	n:690000
Cons ci ratio: 1.524403e-02	ci left: 8.678663e-02	ci right 8.812119e-02	k: 60342	n:690000
KS ci ratio: 1.658796e-01	ci left: 7.416144e-04	ci right 8.771260e-04	k: 557	n:690000
SECISBP2L   690000 perm   322 sec   (2145 perm/sec)   p_kst 8.072464e-04   p_cons 8.745217e-02   p_joint 9.130435e-04

Joint ci ratio: 1.552453e-01	ci left: 8.393505e-04	ci right 9.819746e-04	k: 636	n:700000
Cons ci ratio: 1.513049e-02	ci left: 8.683620e-02	ci right 8.816150e-02	k: 61248	n:700000
KS ci ratio: 1.651417e-01	ci left: 7.378668e-04	ci right 8.720342e-04	k: 562	n:700000
SECISBP2L   700000 perm   329 sec   (2128 perm/sec)   p_kst 8.028571e-04   p_cons 8.749714e-02   p_joint 9.085714e-04

Joint ci ratio: 1.541600e-01	ci left: 8.397141e-04	ci right 9.813104e-04	k: 645	n:710000
Cons ci ratio: 1.502104e-02	ci left: 8.686758e-02	ci right 8.818368e-02	k: 62142	n:710000
KS ci ratio: 1.638373e-01	ci left: 7.396286e-04	ci right 8.729494e-04	k: 571	n:710000
SECISBP2L   710000 perm   336 sec   (2112 perm/sec)   p_kst 8.042254e-04   p_cons 8.752394e-02   p_joint 9.084507e-04

Joint ci ratio: 1.529804e-01	ci left: 8.414066e-04	ci right 9.821032e-04	k: 655	n:720000
Cons ci ratio: 1.492224e-02	ci left: 8.680953e-02	ci right 8.811602e-02	k: 62972	n:720000
KS ci ratio: 1.625633e-01	ci left: 7.413455e-04	ci right 8.738351e-04	k: 580	n:720000
SECISBP2L   720000 perm   344 sec   (2095 perm/sec)   p_kst 8.055556e-04   p_cons 8.746111e-02   p_joint 9.097222e-04

Joint ci ratio: 1.518275e-01	ci left: 8.430568e-04	ci right 9.828703e-04	k: 665	n:730000
Cons ci ratio: 1.482014e-02	ci left: 8.680907e-02	ci right 8.810654e-02	k: 63843	n:730000
KS ci ratio: 1.611819e-01	ci left: 7.443339e-04	ci right 8.761177e-04	k: 590	n:730000
SECISBP2L   730000 perm   351 sec   (2080 perm/sec)   p_kst 8.082192e-04   p_cons 8.745616e-02   p_joint 9.109589e-04

Joint ci ratio: 1.505888e-01	ci left: 8.459667e-04	ci right 9.850150e-04	k: 676	n:740000
Cons ci ratio: 1.471749e-02	ci left: 8.683693e-02	ci right 8.812576e-02	k: 64735	n:740000
KS ci ratio: 1.597022e-01	ci left: 7.485435e-04	ci right 8.797393e-04	k: 601	n:740000
SECISBP2L   740000 perm   359 sec   (2064 perm/sec)   p_kst 8.121622e-04   p_cons 8.747973e-02   p_joint 9.135135e-04

Joint ci ratio: 1.499262e-01	ci left: 8.423862e-04	ci right 9.801822e-04	k: 682	n:750000
Cons ci ratio: 1.461878e-02	ci left: 8.684416e-02	ci right 8.812437e-02	k: 65612	n:750000
KS ci ratio: 1.590434e-01	ci left: 7.449636e-04	ci right 8.749419e-04	k: 606	n:750000
SECISBP2L   750000 perm   366 sec   (2048 perm/sec)   p_kst 8.080000e-04   p_cons 8.748267e-02   p_joint 9.093333e-04

Joint ci ratio: 1.490559e-01	ci left: 8.414347e-04	ci right 9.782049e-04	k: 690	n:760000
Cons ci ratio: 1.452466e-02	ci left: 8.682236e-02	ci right 8.809394e-02	k: 66467	n:760000
KS ci ratio: 1.581343e-01	ci left: 7.440064e-04	ci right 8.730053e-04	k: 613	n:760000
SECISBP2L   760000 perm   374 sec   (2032 perm/sec)   p_kst 8.065789e-04   p_cons 8.745658e-02   p_joint 9.078947e-04

Joint ci ratio: 1.477780e-01	ci left: 8.455128e-04	ci right 9.816635e-04	k: 702	n:770000
Cons ci ratio: 1.442928e-02	ci left: 8.683482e-02	ci right 8.809816e-02	k: 67348	n:770000
KS ci ratio: 1.567362e-01	ci left: 7.480670e-04	ci right 8.765155e-04	k: 624	n:770000
SECISBP2L   770000 perm   382 sec   (2017 perm/sec)   p_kst 8.103896e-04   p_cons 8.746494e-02   p_joint 9.116883e-04

Joint ci ratio: 1.472557e-01	ci left: 8.408464e-04	ci right 9.757249e-04	k: 707	n:780000
Cons ci ratio: 1.433288e-02	ci left: 8.687893e-02	ci right 8.813440e-02	k: 68254	n:780000
KS ci ratio: 1.562375e-01	ci left: 7.434037e-04	ci right 8.706072e-04	k: 628	n:780000
SECISBP2L   780000 perm   390 sec   (2002 perm/sec)   p_kst 8.051282e-04   p_cons 8.750513e-02   p_joint 9.064103e-04

Joint ci ratio: 1.464308e-01	ci left: 8.399573e-04	ci right 9.738724e-04	k: 715	n:790000
Cons ci ratio: 1.423500e-02	ci left: 8.695980e-02	ci right 8.820779e-02	k: 69190	n:790000
KS ci ratio: 1.556205e-01	ci left: 7.400756e-04	ci right 8.661628e-04	k: 633	n:790000
SECISBP2L   790000 perm   398 sec   (1987 perm/sec)   p_kst 8.012658e-04   p_cons 8.758228e-02   p_joint 9.050633e-04

Joint ci ratio: 1.448210e-01	ci left: 8.487294e-04	ci right 9.824269e-04	k: 731	n:800000
Cons ci ratio: 1.414319e-02	ci left: 8.699257e-02	ci right 8.823291e-02	k: 70089	n:800000
KS ci ratio: 1.539297e-01	ci left: 7.476471e-04	ci right 8.735127e-04	k: 647	n:800000
SECISBP2L   800000 perm   406 sec   (1973 perm/sec)   p_kst 8.087500e-04   p_cons 8.761125e-02   p_joint 9.137500e-04

Joint ci ratio: 1.438417e-01	ci left: 8.501512e-04	ci right 9.830893e-04	k: 741	n:810000
Cons ci ratio: 1.404945e-02	ci left: 8.706641e-02	ci right 8.829951e-02	k: 71022	n:810000
KS ci ratio: 1.529882e-01	ci left: 7.479142e-04	ci right 8.729841e-04	k: 655	n:810000
SECISBP2L   810000 perm   414 sec   (1958 perm/sec)   p_kst 8.086420e-04   p_cons 8.768148e-02   p_joint 9.148148e-04

Joint ci ratio: 1.429772e-01	ci left: 8.503653e-04	ci right 9.824696e-04	k: 750	n:820000
Cons ci ratio: 1.396339e-02	ci left: 8.707160e-02	ci right 8.829716e-02	k: 71900	n:820000
KS ci ratio: 1.521785e-01	ci left: 7.470039e-04	ci right 8.712003e-04	k: 662	n:820000
SECISBP2L   820000 perm   422 sec   (1945 perm/sec)   p_kst 8.073171e-04   p_cons 8.768293e-02   p_joint 9.146341e-04

Joint ci ratio: 1.419413e-01	ci left: 8.529006e-04	ci right 9.843576e-04	k: 761	n:830000
Cons ci ratio: 1.387963e-02	ci left: 8.706829e-02	ci right 8.828639e-02	k: 72771	n:830000
KS ci ratio: 1.511560e-01	ci left: 7.484358e-04	ci right 8.719584e-04	k: 671	n:830000
SECISBP2L   830000 perm   430 sec   (1930 perm/sec)   p_kst 8.084337e-04   p_cons 8.767590e-02   p_joint 9.168675e-04

Joint ci ratio: 1.414783e-01	ci left: 8.484882e-04	ci right 9.788025e-04	k: 766	n:840000
Cons ci ratio: 1.379264e-02	ci left: 8.711967e-02	ci right 8.833079e-02	k: 73688	n:840000
KS ci ratio: 1.507085e-01	ci left: 7.441078e-04	ci right 8.665197e-04	k: 675	n:840000
SECISBP2L   840000 perm   438 sec   (1916 perm/sec)   p_kst 8.035714e-04   p_cons 8.772381e-02   p_joint 9.119048e-04

Joint ci ratio: 1.404744e-01	ci left: 8.509908e-04	ci right 9.806844e-04	k: 777	n:850000
Cons ci ratio: 1.371260e-02	ci left: 8.710770e-02	ci right 8.831158e-02	k: 74552	n:850000
KS ci ratio: 1.496058e-01	ci left: 7.466763e-04	ci right 8.685317e-04	k: 685	n:850000
SECISBP2L   850000 perm   447 sec   (1902 perm/sec)   p_kst 8.058824e-04   p_cons 8.770824e-02   p_joint 9.141176e-04

Joint ci ratio: 1.399361e-01	ci left: 8.478275e-04	ci right 9.765025e-04	k: 783	n:860000
Cons ci ratio: 1.362622e-02	ci left: 8.718645e-02	ci right 8.838377e-02	k: 75494	n:860000
KS ci ratio: 1.490638e-01	ci left: 7.435907e-04	ci right 8.644636e-04	k: 690	n:860000
SECISBP2L   860000 perm   455 sec   (1889 perm/sec)   p_kst 8.023256e-04   p_cons 8.778372e-02   p_joint 9.104651e-04

Joint ci ratio: 1.390520e-01	ci left: 8.491755e-04	ci right 9.771735e-04	k: 793	n:870000
Cons ci ratio: 1.354913e-02	ci left: 8.717289e-02	ci right 8.836319e-02	k: 76357	n:870000
KS ci ratio: 1.479966e-01	ci left: 7.461108e-04	ci right 8.664483e-04	k: 700	n:870000
SECISBP2L   870000 perm   464 sec   (1875 perm/sec)   p_kst 8.045977e-04   p_cons 8.776667e-02   p_joint 9.114943e-04

Joint ci ratio: 1.380128e-01	ci left: 8.526896e-04	ci right 9.801778e-04	k: 805	n:880000
Cons ci ratio: 1.346645e-02	ci left: 8.724122e-02	ci right 8.842513e-02	k: 77292	n:880000
KS ci ratio: 1.468487e-01	ci left: 7.496713e-04	ci right 8.695629e-04	k: 711	n:880000
SECISBP2L   880000 perm   473 sec   (1862 perm/sec)   p_kst 8.079545e-04   p_cons 8.783182e-02   p_joint 9.147727e-04

Joint ci ratio: 1.370804e-01	ci left: 8.550432e-04	ci right 9.819491e-04	k: 816	n:890000
Cons ci ratio: 1.339408e-02	ci left: 8.720274e-02	ci right 8.837972e-02	k: 78133	n:890000
KS ci ratio: 1.457271e-01	ci left: 7.531553e-04	ci right 8.726041e-04	k: 722	n:890000
SECISBP2L   890000 perm   481 sec   (1849 perm/sec)   p_kst 8.112360e-04   p_cons 8.778989e-02   p_joint 9.168539e-04

Joint ci ratio: 1.364971e-01	ci left: 8.530542e-04	ci right 9.790824e-04	k: 823	n:900000
Cons ci ratio: 1.331881e-02	ci left: 8.721387e-02	ci right 8.838434e-02	k: 79018	n:900000
KS ci ratio: 1.450268e-01	ci left: 7.522817e-04	ci right 8.709690e-04	k: 729	n:900000
SECISBP2L   900000 perm   490 sec   (1837 perm/sec)   p_kst 8.100000e-04   p_cons 8.779778e-02   p_joint 9.144444e-04

Joint ci ratio: 1.357577e-01	ci left: 8.532333e-04	ci right 9.785499e-04	k: 832	n:910000
Cons ci ratio: 1.324597e-02	ci left: 8.721054e-02	ci right 8.837450e-02	k: 79890	n:910000
KS ci ratio: 1.441409e-01	ci left: 7.535473e-04	ci right 8.716455e-04	k: 738	n:910000
SECISBP2L   910000 perm   499 sec   (1824 perm/sec)   p_kst 8.109890e-04   p_cons 8.779121e-02   p_joint 9.142857e-04

Joint ci ratio: 1.351910e-01	ci left: 8.513098e-04	ci right 9.757800e-04	k: 839	n:920000
Cons ci ratio: 1.317664e-02	ci left: 8.717912e-02	ci right 8.833653e-02	k: 80736	n:920000
KS ci ratio: 1.435594e-01	ci left: 7.516435e-04	ci right 8.689275e-04	k: 744	n:920000
SECISBP2L   920000 perm   508 sec   (1811 perm/sec)   p_kst 8.086957e-04   p_cons 8.775652e-02   p_joint 9.119565e-04

Joint ci ratio: 1.346314e-01	ci left: 8.494287e-04	ci right 9.730686e-04	k: 846	n:930000
Cons ci ratio: 1.310724e-02	ci left: 8.716232e-02	ci right 8.831337e-02	k: 81595	n:930000
KS ci ratio: 1.429850e-01	ci left: 7.497816e-04	ci right 8.662670e-04	k: 750	n:930000
SECISBP2L   930000 perm   517 sec   (1799 perm/sec)   p_kst 8.064516e-04   p_cons 8.773656e-02   p_joint 9.096774e-04

Joint ci ratio: 1.341573e-01	ci left: 8.465605e-04	ci right 9.693144e-04	k: 852	n:940000
Cons ci ratio: 1.303287e-02	ci left: 8.722015e-02	ci right 8.836537e-02	k: 82524	n:940000
KS ci ratio: 1.424174e-01	ci left: 7.479603e-04	ci right 8.636621e-04	k: 756	n:940000
SECISBP2L   940000 perm   526 sec   (1787 perm/sec)   p_kst 8.042553e-04   p_cons 8.779149e-02   p_joint 9.063830e-04

Joint ci ratio: 1.335326e-01	ci left: 8.457884e-04	ci right 9.678140e-04	k: 860	n:950000
Cons ci ratio: 1.296783e-02	ci left: 8.717707e-02	ci right 8.831597e-02	k: 83358	n:950000
KS ci ratio: 1.418565e-01	ci left: 7.461781e-04	ci right 8.611113e-04	k: 762	n:950000
SECISBP2L   950000 perm   535 sec   (1775 perm/sec)   p_kst 8.021053e-04   p_cons 8.774526e-02   p_joint 9.052632e-04

Joint ci ratio: 1.326115e-01	ci left: 8.490621e-04	ci right 9.706484e-04	k: 872	n:960000
Cons ci ratio: 1.289864e-02	ci left: 8.719826e-02	ci right 8.833132e-02	k: 84253	n:960000
KS ci ratio: 1.409358e-01	ci left: 7.484537e-04	ci right 8.629262e-04	k: 772	n:960000
SECISBP2L   960000 perm   545 sec   (1763 perm/sec)   p_kst 8.041667e-04   p_cons 8.776354e-02   p_joint 9.083333e-04

Joint ci ratio: 1.317837e-01	ci left: 8.512741e-04	ci right 9.723566e-04	k: 883	n:970000
Cons ci ratio: 1.283146e-02	ci left: 8.720772e-02	ci right 8.833495e-02	k: 85137	n:970000
KS ci ratio: 1.402121e-01	ci left: 7.486950e-04	ci right 8.625674e-04	k: 780	n:970000
SECISBP2L   970000 perm   554 sec   (1751 perm/sec)   p_kst 8.041237e-04   p_cons 8.777010e-02   p_joint 9.103093e-04

Joint ci ratio: 1.308981e-01	ci left: 8.544303e-04	ci right 9.750815e-04	k: 895	n:980000
Cons ci ratio: 1.276458e-02	ci left: 8.722616e-02	ci right 8.834771e-02	k: 86030	n:980000
KS ci ratio: 1.393228e-01	ci left: 7.509026e-04	ci right 8.643263e-04	k: 790	n:980000
SECISBP2L   980000 perm   563 sec   (1740 perm/sec)   p_kst 8.061224e-04   p_cons 8.778571e-02   p_joint 9.132653e-04

Joint ci ratio: 1.299584e-01	ci left: 8.585027e-04	ci right 9.787916e-04	k: 908	n:990000
Cons ci ratio: 1.269930e-02	ci left: 8.723719e-02	ci right 8.835311e-02	k: 86916	n:990000
KS ci ratio: 1.382776e-01	ci left: 7.550181e-04	ci right 8.681374e-04	k: 802	n:990000
SECISBP2L   990000 perm   573 sec   (1728 perm/sec)   p_kst 8.101010e-04   p_cons 8.779394e-02   p_joint 9.171717e-04

Joint ci ratio: 1.294610e-01	ci left: 8.566904e-04	ci right 9.762308e-04	k: 915	n:1000000
Cons ci ratio: 1.263627e-02	ci left: 8.723206e-02	ci right 8.834233e-02	k: 87786	n:1000000
KS ci ratio: 1.379348e-01	ci left: 7.513296e-04	ci right 8.635943e-04	k: 806	n:1000000
SECISBP2L   1000000 perm   582 sec   (1717 perm/sec)   p_kst 8.060000e-04   p_cons 8.778600e-02   p_joint 9.150000e-04

Joint ci ratio: 1.284135e-01	ci left: 8.625810e-04	ci right 9.818952e-04	k: 930	n:1010000
Cons ci ratio: 1.257510e-02	ci left: 8.721520e-02	ci right 8.831984e-02	k: 88644	n:1010000
KS ci ratio: 1.366700e-01	ci left: 7.582323e-04	ci right 8.704049e-04	k: 821	n:1010000
SECISBP2L   1010000 perm   592 sec   (1706 perm/sec)   p_kst 8.128713e-04   p_cons 8.776634e-02   p_joint 9.207921e-04

Joint ci ratio: 1.275937e-01	ci left: 8.655124e-04	ci right 9.844099e-04	k: 942	n:1020000
Cons ci ratio: 1.251290e-02	ci left: 8.722312e-02	ci right 8.832236e-02	k: 89527	n:1020000
KS ci ratio: 1.358460e-01	ci left: 7.602684e-04	ci right 8.720094e-04	k: 831	n:1020000
SECISBP2L   1020000 perm   602 sec   (1695 perm/sec)   p_kst 8.147059e-04   p_cons 8.777157e-02   p_joint 9.235294e-04

Joint ci ratio: 1.270560e-01	ci left: 8.646289e-04	ci right 9.828668e-04	k: 950	n:1030000
Cons ci ratio: 1.244973e-02	ci left: 8.725510e-02	ci right 8.834916e-02	k: 90435	n:1030000
KS ci ratio: 1.352782e-01	ci left: 7.594527e-04	ci right 8.705698e-04	k: 838	n:1030000
SECISBP2L   1030000 perm   612 sec   (1684 perm/sec)   p_kst 8.135922e-04   p_cons 8.780097e-02   p_joint 9.223301e-04

Joint ci ratio: 1.263273e-01	ci left: 8.665570e-04	ci right 9.843280e-04	k: 961	n:1040000
Cons ci ratio: 1.238943e-02	ci left: 8.726156e-02	ci right 8.835036e-02	k: 91317	n:1040000
KS ci ratio: 1.344791e-01	ci left: 7.614413e-04	ci right 8.721385e-04	k: 848	n:1040000
SECISBP2L   1040000 perm   621 sec   (1673 perm/sec)   p_kst 8.153846e-04   p_cons 8.780481e-02   p_joint 9.240385e-04

Joint ci ratio: 1.256111e-01	ci left: 8.684502e-04	ci right 9.857596e-04	k: 972	n:1050000
Cons ci ratio: 1.233008e-02	ci left: 8.726695e-02	ci right 8.835056e-02	k: 92198	n:1050000
KS ci ratio: 1.336939e-01	ci left: 7.633939e-04	ci right 8.736755e-04	k: 858	n:1050000
SECISBP2L   1050000 perm   631 sec   (1663 perm/sec)   p_kst 8.171429e-04   p_cons 8.780762e-02   p_joint 9.257143e-04

Joint ci ratio: 1.249070e-01	ci left: 8.703095e-04	ci right 9.871622e-04	k: 983	n:1060000
Cons ci ratio: 1.227244e-02	ci left: 8.726096e-02	ci right 8.833940e-02	k: 93067	n:1060000
KS ci ratio: 1.329989e-01	ci left: 7.643994e-04	ci right 8.742069e-04	k: 867	n:1060000
SECISBP2L   1060000 perm   641 sec   (1653 perm/sec)   p_kst 8.179245e-04   p_cons 8.779906e-02   p_joint 9.273585e-04

Joint ci ratio: 1.239653e-01	ci left: 8.757582e-04	ci right 9.923911e-04	k: 998	n:1070000
Cons ci ratio: 1.221616e-02	ci left: 8.724765e-02	ci right 8.832094e-02	k: 93928	n:1070000
KS ci ratio: 1.320888e-01	ci left: 7.680987e-04	ci right 8.776232e-04	k: 879	n:1070000
SECISBP2L   1070000 perm   651 sec   (1643 perm/sec)   p_kst 8.214953e-04   p_cons 8.778318e-02   p_joint 9.327103e-04

Joint ci ratio: 1.236565e-01	ci left: 8.721355e-04	ci right 9.879753e-04	k: 1003	n:1080000
Cons ci ratio: 1.215855e-02	ci left: 8.726229e-02	ci right 8.833067e-02	k: 94819	n:1080000
KS ci ratio: 1.317153e-01	ci left: 7.654634e-04	ci right 8.742795e-04	k: 884	n:1080000
SECISBP2L   1080000 perm   661 sec   (1633 perm/sec)   p_kst 8.185185e-04   p_cons 8.779537e-02   p_joint 9.287037e-04

Joint ci ratio: 1.229240e-01	ci left: 8.748040e-04	ci right 9.902598e-04	k: 1015	n:1090000
Cons ci ratio: 1.210431e-02	ci left: 8.724282e-02	ci right 8.830616e-02	k: 95673	n:1090000
KS ci ratio: 1.309041e-01	ci left: 7.682011e-04	ci right 8.766815e-04	k: 895	n:1090000
SECISBP2L   1090000 perm   672 sec   (1623 perm/sec)   p_kst 8.211009e-04   p_cons 8.777339e-02   p_joint 9.311927e-04

Joint ci ratio: 1.221448e-01	ci left: 8.783072e-04	ci right 9.934376e-04	k: 1028	n:1100000
Cons ci ratio: 1.204908e-02	ci left: 8.724638e-02	ci right 8.830488e-02	k: 96552	n:1100000
KS ci ratio: 1.301077e-01	ci left: 7.708911e-04	ci right 8.790379e-04	k: 906	n:1100000
SECISBP2L   1100000 perm   682 sec   (1612 perm/sec)   p_kst 8.236364e-04   p_cons 8.777455e-02   p_joint 9.345455e-04

Joint ci ratio: 1.216728e-01	ci left: 8.773820e-04	ci right 9.919146e-04	k: 1036	n:1110000
Cons ci ratio: 1.199703e-02	ci left: 8.721755e-02	ci right 8.827109e-02	k: 97395	n:1110000
KS ci ratio: 1.296086e-01	ci left: 7.700475e-04	ci right 8.776297e-04	k: 913	n:1110000
SECISBP2L   1110000 perm   692 sec   (1603 perm/sec)   p_kst 8.225225e-04   p_cons 8.774324e-02   p_joint 9.333333e-04

Joint ci ratio: 1.212063e-01	ci left: 8.764741e-04	ci right 9.904180e-04	k: 1044	n:1120000
Cons ci ratio: 1.194458e-02	ci left: 8.720348e-02	ci right 8.825222e-02	k: 98254	n:1120000
KS ci ratio: 1.290451e-01	ci left: 7.700839e-04	ci right 8.771676e-04	k: 921	n:1120000
SECISBP2L   1120000 perm   702 sec   (1595 perm/sec)   p_kst 8.223214e-04   p_cons 8.772679e-02   p_joint 9.321429e-04

Joint ci ratio: 1.208600e-01	ci left: 8.738666e-04	ci right 9.871237e-04	k: 1050	n:1130000
Cons ci ratio: 1.189222e-02	ci left: 8.719762e-02	ci right 8.824166e-02	k: 99122	n:1130000
KS ci ratio: 1.286968e-01	ci left: 7.675510e-04	ci right 8.739725e-04	k: 926	n:1130000
SECISBP2L   1130000 perm   712 sec   (1586 perm/sec)   p_kst 8.194690e-04   p_cons 8.771858e-02   p_joint 9.292035e-04

Joint ci ratio: 1.202323e-01	ci left: 8.755593e-04	ci right 9.884046e-04	k: 1061	n:1140000
Cons ci ratio: 1.184178e-02	ci left: 8.717525e-02	ci right 8.821457e-02	k: 99971	n:1140000
KS ci ratio: 1.280081e-01	ci left: 7.693085e-04	ci right 8.753594e-04	k: 936	n:1140000
SECISBP2L   1140000 perm   723 sec   (1578 perm/sec)   p_kst 8.210526e-04   p_cons 8.769386e-02   p_joint 9.307018e-04

Joint ci ratio: 1.198381e-01	ci left: 8.738499e-04	ci right 9.860795e-04	k: 1068	n:1150000
Cons ci ratio: 1.178806e-02	ci left: 8.720618e-02	ci right 8.824112e-02	k: 100881	n:1150000
KS ci ratio: 1.275327e-01	ci left: 7.685112e-04	ci right 8.740290e-04	k: 943	n:1150000
SECISBP2L   1150000 perm   733 sec   (1569 perm/sec)   p_kst 8.200000e-04   p_cons 8.772261e-02   p_joint 9.286957e-04

Joint ci ratio: 1.191710e-01	ci left: 8.763523e-04	ci right 9.882326e-04	k: 1080	n:1160000
Cons ci ratio: 1.173905e-02	ci left: 8.718242e-02	ci right 8.821274e-02	k: 101728	n:1160000
KS ci ratio: 1.267959e-01	ci left: 7.710673e-04	ci right 8.762785e-04	k: 954	n:1160000
SECISBP2L   1160000 perm   743 sec   (1560 perm/sec)   p_kst 8.224138e-04   p_cons 8.769655e-02   p_joint 9.310345e-04

Joint ci ratio: 1.188418e-01	ci left: 8.738376e-04	ci right 9.850671e-04	k: 1086	n:1170000
Cons ci ratio: 1.168990e-02	ci left: 8.716930e-02	ci right 8.819513e-02	k: 102587	n:1170000
KS ci ratio: 1.263996e-01	ci left: 7.694427e-04	ci right 8.740795e-04	k: 960	n:1170000
SECISBP2L   1170000 perm   754 sec   (1552 perm/sec)   p_kst 8.205128e-04   p_cons 8.768120e-02   p_joint 9.282051e-04

Joint ci ratio: 1.181373e-01	ci left: 8.771227e-04	ci right 9.880623e-04	k: 1099	n:1180000
Cons ci ratio: 1.163969e-02	ci left: 8.717924e-02	ci right 8.820075e-02	k: 103473	n:1180000
KS ci ratio: 1.255530e-01	ci left: 7.735919e-04	ci right 8.780359e-04	k: 973	n:1180000
SECISBP2L   1180000 perm   764 sec   (1544 perm/sec)   p_kst 8.245763e-04   p_cons 8.768898e-02   p_joint 9.313559e-04

Joint ci ratio: 1.176039e-01	ci left: 8.779076e-04	ci right 9.884102e-04	k: 1109	n:1190000
Cons ci ratio: 1.159104e-02	ci left: 8.717645e-02	ci right 8.819363e-02	k: 104344	n:1190000
KS ci ratio: 1.249769e-01	ci left: 7.744172e-04	ci right 8.784573e-04	k: 982	n:1190000
SECISBP2L   1190000 perm   775 sec   (1536 perm/sec)   p_kst 8.252101e-04   p_cons 8.768403e-02   p_joint 9.319328e-04

Joint ci ratio: 1.172349e-01	ci left: 8.762536e-04	ci right 9.861781e-04	k: 1116	n:1200000
Cons ci ratio: 1.153819e-02	ci left: 8.724020e-02	ci right 8.825345e-02	k: 105295	n:1200000
KS ci ratio: 1.246604e-01	ci left: 7.720002e-04	ci right 8.754336e-04	k: 987	n:1200000
SECISBP2L   1200000 perm   786 sec   (1528 perm/sec)   p_kst 8.225000e-04   p_cons 8.774583e-02   p_joint 9.300000e-04

Joint ci ratio: 1.170259e-01	ci left: 8.722207e-04	ci right 9.814306e-04	k: 1120	n:1210000
Cons ci ratio: 1.148860e-02	ci left: 8.726747e-02	ci right 8.827665e-02	k: 106203	n:1210000
KS ci ratio: 1.245347e-01	ci left: 7.672213e-04	ci right 8.699031e-04	k: 989	n:1210000
SECISBP2L   1210000 perm   796 sec   (1519 perm/sec)   p_kst 8.173554e-04   p_cons 8.777107e-02   p_joint 9.256198e-04

Joint ci ratio: 1.165589e-01	ci left: 8.722329e-04	ci right 9.809785e-04	k: 1129	n:1220000
Cons ci ratio: 1.144059e-02	ci left: 8.728122e-02	ci right 8.828631e-02	k: 107095	n:1220000
KS ci ratio: 1.239725e-01	ci left: 7.680804e-04	ci right 8.703790e-04	k: 998	n:1220000
SECISBP2L   1220000 perm   807 sec   (1512 perm/sec)   p_kst 8.180328e-04   p_cons 8.778279e-02   p_joint 9.254098e-04

Joint ci ratio: 1.156915e-01	ci left: 8.785614e-04	ci right 9.872253e-04	k: 1146	n:1230000
Cons ci ratio: 1.139617e-02	ci left: 8.725258e-02	ci right 8.825342e-02	k: 107935	n:1230000
KS ci ratio: 1.229911e-01	ci left: 7.744423e-04	ci right 8.767123e-04	k: 1014	n:1230000
SECISBP2L   1230000 perm   818 sec   (1503 perm/sec)   p_kst 8.243902e-04   p_cons 8.775203e-02   p_joint 9.317073e-04

Joint ci ratio: 1.149917e-01	ci left: 8.824409e-04	ci right 9.908796e-04	k: 1160	n:1240000
Cons ci ratio: 1.134913e-02	ci left: 8.726866e-02	ci right 8.826552e-02	k: 108830	n:1240000
KS ci ratio: 1.222702e-01	ci left: 7.775775e-04	ci right 8.796160e-04	k: 1026	n:1240000
SECISBP2L   1240000 perm   830 sec   (1495 perm/sec)   p_kst 8.274194e-04   p_cons 8.776613e-02   p_joint 9.354839e-04

Joint ci ratio: 1.144507e-01	ci left: 8.839289e-04	ci right 9.920049e-04	k: 1171	n:1250000
Cons ci ratio: 1.130340e-02	ci left: 8.727411e-02	ci right 8.826700e-02	k: 109712	n:1250000
KS ci ratio: 1.216792e-01	ci left: 7.791128e-04	ci right 8.808230e-04	k: 1036	n:1250000
SECISBP2L   1250000 perm   841 sec   (1486 perm/sec)   p_kst 8.288000e-04   p_cons 8.776960e-02   p_joint 9.368000e-04

Joint ci ratio: 1.141590e-01	ci left: 8.815393e-04	ci right 9.890300e-04	k: 1177	n:1260000
Cons ci ratio: 1.126279e-02	ci left: 8.721458e-02	ci right 8.820319e-02	k: 110512	n:1260000
KS ci ratio: 1.213288e-01	ci left: 7.775465e-04	ci right 8.787390e-04	k: 1042	n:1260000
SECISBP2L   1260000 perm   852 sec   (1478 perm/sec)   p_kst 8.269841e-04   p_cons 8.770794e-02   p_joint 9.341270e-04

Joint ci ratio: 1.138214e-01	ci left: 8.799527e-04	ci right 9.869113e-04	k: 1184	n:1270000
Cons ci ratio: 1.121914e-02	ci left: 8.720546e-02	ci right 8.819012e-02	k: 111375	n:1270000
KS ci ratio: 1.209238e-01	ci left: 7.767689e-04	ci right 8.774985e-04	k: 1049	n:1270000
SECISBP2L   1270000 perm   864 sec   (1470 perm/sec)   p_kst 8.259843e-04   p_cons 8.769685e-02   p_joint 9.322835e-04

Joint ci ratio: 1.132493e-01	ci left: 8.821869e-04	ci right 9.888421e-04	k: 1196	n:1280000
Cons ci ratio: 1.117446e-02	ci left: 8.721832e-02	ci right 8.819917e-02	k: 112266	n:1280000
KS ci ratio: 1.202385e-01	ci left: 7.797927e-04	ci right 8.803006e-04	k: 1061	n:1280000
SECISBP2L   1280000 perm   876 sec   (1462 perm/sec)   p_kst 8.289062e-04   p_cons 8.770781e-02   p_joint 9.343750e-04

Joint ci ratio: 1.126858e-01	ci left: 8.843878e-04	ci right 9.907416e-04	k: 1208	n:1290000
Cons ci ratio: 1.113048e-02	ci left: 8.722866e-02	ci right 8.820575e-02	k: 113154	n:1290000
KS ci ratio: 1.196763e-01	ci left: 7.812671e-04	ci right 8.814610e-04	k: 1071	n:1290000
SECISBP2L   1290000 perm   887 sec   (1454 perm/sec)   p_kst 8.302326e-04   p_cons 8.771628e-02   p_joint 9.364341e-04

Joint ci ratio: 1.124074e-01	ci left: 8.820702e-04	ci right 9.878659e-04	k: 1214	n:1300000
Cons ci ratio: 1.108573e-02	ci left: 8.725727e-02	ci right 8.823072e-02	k: 114066	n:1300000
KS ci ratio: 1.194538e-01	ci left: 7.782422e-04	ci right 8.778495e-04	k: 1075	n:1300000
SECISBP2L   1300000 perm   899 sec   (1446 perm/sec)   p_kst 8.269231e-04   p_cons 8.774308e-02   p_joint 9.338462e-04

Joint ci ratio: 1.119019e-01	ci left: 8.834983e-04	ci right 9.889573e-04	k: 1225	n:1310000
Cons ci ratio: 1.103999e-02	ci left: 8.730753e-02	ci right 8.827750e-02	k: 115007	n:1310000
KS ci ratio: 1.189025e-01	ci left: 7.797075e-04	ci right 8.790094e-04	k: 1085	n:1310000
SECISBP2L   1310000 perm   911 sec   (1438 perm/sec)   p_kst 8.282443e-04   p_cons 8.779160e-02   p_joint 9.351145e-04

Joint ci ratio: 1.114934e-01	ci left: 8.834328e-04	ci right 9.884738e-04	k: 1234	n:1320000
Cons ci ratio: 1.099778e-02	ci left: 8.731396e-02	ci right 8.828027e-02	k: 115891	n:1320000
KS ci ratio: 1.184128e-01	ci left: 7.804164e-04	ci right 8.793707e-04	k: 1094	n:1320000
SECISBP2L   1320000 perm   923 sec   (1431 perm/sec)   p_kst 8.287879e-04   p_cons 8.779621e-02   p_joint 9.348485e-04

Joint ci ratio: 1.110001e-01	ci left: 8.848310e-04	ci right 9.895423e-04	k: 1245	n:1330000
Cons ci ratio: 1.095723e-02	ci left: 8.730306e-02	ci right 8.826566e-02	k: 116752	n:1330000
KS ci ratio: 1.178224e-01	ci left: 7.825750e-04	ci right 8.812737e-04	k: 1105	n:1330000
SECISBP2L   1330000 perm   934 sec   (1423 perm/sec)   p_kst 8.308271e-04   p_cons 8.778346e-02   p_joint 9.360902e-04

Joint ci ratio: 1.106455e-01	ci left: 8.840324e-04	ci right 9.882932e-04	k: 1253	n:1340000
Cons ci ratio: 1.091478e-02	ci left: 8.732656e-02	ci right 8.828567e-02	k: 117659	n:1340000
KS ci ratio: 1.175571e-01	ci left: 7.803564e-04	ci right 8.785382e-04	k: 1110	n:1340000
SECISBP2L   1340000 perm   947 sec   (1416 perm/sec)   p_kst 8.283582e-04   p_cons 8.780522e-02   p_joint 9.350746e-04

Joint ci ratio: 1.102069e-01	ci left: 8.846869e-04	ci right 9.885845e-04	k: 1263	n:1350000
Cons ci ratio: 1.087303e-02	ci left: 8.734677e-02	ci right 8.830241e-02	k: 118562	n:1350000
KS ci ratio: 1.170838e-01	ci left: 7.810470e-04	ci right 8.788927e-04	k: 1119	n:1350000
SECISBP2L   1350000 perm   959 sec   (1408 perm/sec)   p_kst 8.288889e-04   p_cons 8.782370e-02   p_joint 9.355556e-04

Joint ci ratio: 1.097735e-01	ci left: 8.853325e-04	ci right 9.888706e-04	k: 1273	n:1360000
Cons ci ratio: 1.083195e-02	ci left: 8.736375e-02	ci right 8.831594e-02	k: 119461	n:1360000
KS ci ratio: 1.166161e-01	ci left: 7.817282e-04	ci right 8.792413e-04	k: 1128	n:1360000
SECISBP2L   1360000 perm   971 sec   (1401 perm/sec)   p_kst 8.294118e-04   p_cons 8.783897e-02   p_joint 9.360294e-04

Joint ci ratio: 1.093879e-01	ci left: 8.852595e-04	ci right 9.884019e-04	k: 1282	n:1370000
Cons ci ratio: 1.079477e-02	ci left: 8.732953e-02	ci right 8.827806e-02	k: 120290	n:1370000
KS ci ratio: 1.161540e-01	ci left: 7.824003e-04	ci right 8.795839e-04	k: 1137	n:1370000
SECISBP2L   1370000 perm   983 sec   (1394 perm/sec)   p_kst 8.299270e-04   p_cons 8.780292e-02   p_joint 9.357664e-04

Joint ci ratio: 8.533395e-02	ci left: 1.461645e-03	ci right 1.592635e-03	k: 2106	n:1380000
Cons ci ratio: 1.075559e-02	ci left: 8.733122e-02	ci right 8.827631e-02	k: 121168	n:1380000
KS ci ratio: 1.155966e-01	ci left: 7.844708e-04	ci right 8.814120e-04	k: 1148	n:1380000
SECISBP2L   1380000 perm   995 sec   (1387 perm/sec)   p_kst 8.318841e-04   p_cons 8.780290e-02   p_joint 1.526087e-03

Joint ci ratio: 1.085868e-01	ci left: 8.858184e-04	ci right 9.882218e-04	k: 1301	n:1390000
Cons ci ratio: 1.071818e-02	ci left: 8.731280e-02	ci right 8.825438e-02	k: 122018	n:1390000
KS ci ratio: 1.152461e-01	ci left: 7.837177e-04	ci right 8.802522e-04	k: 1155	n:1390000
SECISBP2L   1390000 perm   1007 sec   (1380 perm/sec)   p_kst 8.309353e-04   p_cons 8.778273e-02   p_joint 9.359712e-04

Joint ci ratio: 1.082548e-01	ci left: 8.850505e-04	ci right 9.870323e-04	k: 1309	n:1400000
Cons ci ratio: 1.068064e-02	ci left: 8.730249e-02	ci right 8.824064e-02	k: 122879	n:1400000
KS ci ratio: 1.149483e-01	ci left: 7.822820e-04	ci right 8.783738e-04	k: 1161	n:1400000
SECISBP2L   1400000 perm   1020 sec   (1372 perm/sec)   p_kst 8.292857e-04   p_cons 8.777071e-02   p_joint 9.350000e-04

Joint ci ratio: 1.077622e-01	ci left: 8.870543e-04	ci right 9.887724e-04	k: 1321	n:1410000
Cons ci ratio: 1.064372e-02	ci left: 8.728880e-02	ci right 8.822354e-02	k: 123735	n:1410000
KS ci ratio: 1.144568e-01	ci left: 7.836226e-04	ci right 8.794398e-04	k: 1171	n:1410000
SECISBP2L   1410000 perm   1033 sec   (1366 perm/sec)   p_kst 8.304965e-04   p_cons 8.775532e-02   p_joint 9.368794e-04

Joint ci ratio: 8.400854e-02	ci left: 1.466656e-03	ci right 1.595954e-03	k: 2173	n:1420000
Cons ci ratio: 1.060476e-02	ci left: 8.731183e-02	ci right 8.824337e-02	k: 124643	n:1420000
KS ci ratio: 1.138751e-01	ci left: 7.863136e-04	ci right 8.819384e-04	k: 1183	n:1420000
SECISBP2L   1420000 perm   1045 sec   (1359 perm/sec)   p_kst 8.330986e-04   p_cons 8.777676e-02   p_joint 1.530282e-03

Joint ci ratio: 8.377774e-02	ci left: 1.464615e-03	ci right 1.593361e-03	k: 2185	n:1430000
Cons ci ratio: 1.056691e-02	ci left: 8.732408e-02	ci right 8.825241e-02	k: 125536	n:1430000
KS ci ratio: 1.136356e-01	ci left: 7.842119e-04	ci right 8.793670e-04	k: 1188	n:1430000
SECISBP2L   1430000 perm   1057 sec   (1353 perm/sec)   p_kst 8.307692e-04   p_cons 8.778741e-02   p_joint 1.527972e-03

Joint ci ratio: 8.352980e-02	ci left: 1.463283e-03	ci right 1.591513e-03	k: 2198	n:1440000
Cons ci ratio: 1.052846e-02	ci left: 8.735141e-02	ci right 8.827663e-02	k: 126451	n:1440000
KS ci ratio: 1.133975e-01	ci left: 7.821396e-04	ci right 8.768311e-04	k: 1193	n:1440000
SECISBP2L   1440000 perm   1070 sec   (1346 perm/sec)   p_kst 8.284722e-04   p_cons 8.781319e-02   p_joint 1.526389e-03

Joint ci ratio: 8.326520e-02	ci left: 1.462645e-03	ci right 1.590393e-03	k: 2212	n:1450000
Cons ci ratio: 1.049354e-02	ci left: 8.733090e-02	ci right 8.825282e-02	k: 127297	n:1450000
KS ci ratio: 1.130666e-01	ci left: 7.814363e-04	ci right 8.757483e-04	k: 1200	n:1450000
SECISBP2L   1450000 perm   1082 sec   (1340 perm/sec)   p_kst 8.275862e-04   p_cons 8.779103e-02   p_joint 1.525517e-03

Joint ci ratio: 8.298445e-02	ci left: 1.462688e-03	ci right 1.589988e-03	k: 2227	n:1460000
Cons ci ratio: 1.045844e-02	ci left: 8.731887e-02	ci right 8.823756e-02	k: 128155	n:1460000
KS ci ratio: 1.125523e-01	ci left: 7.834057e-04	ci right 8.774967e-04	k: 1211	n:1460000
SECISBP2L   1460000 perm   1095 sec   (1334 perm/sec)   p_kst 8.294521e-04   p_cons 8.777740e-02   p_joint 1.525342e-03

Joint ci ratio: 8.263275e-02	ci left: 1.465395e-03	ci right 1.592364e-03	k: 2246	n:1470000
Cons ci ratio: 1.042434e-02	ci left: 8.729683e-02	ci right 8.821228e-02	k: 128998	n:1470000
KS ci ratio: 1.121367e-01	ci left: 7.840269e-04	ci right 8.778217e-04	k: 1220	n:1470000
SECISBP2L   1470000 perm   1108 sec   (1327 perm/sec)   p_kst 8.299320e-04   p_cons 8.775374e-02   p_joint 1.527891e-03

Joint ci ratio: 8.226731e-02	ci left: 1.468729e-03	ci right 1.595397e-03	k: 2266	n:1480000
Cons ci ratio: 1.038896e-02	ci left: 8.730004e-02	ci right 8.821239e-02	k: 129878	n:1480000
KS ci ratio: 1.114990e-01	ci left: 7.879244e-04	ci right 8.816143e-04	k: 1234	n:1480000
SECISBP2L   1480000 perm   1121 sec   (1321 perm/sec)   p_kst 8.337838e-04   p_cons 8.775541e-02   p_joint 1.531081e-03

Joint ci ratio: 8.197851e-02	ci left: 1.469389e-03	ci right 1.595648e-03	k: 2282	n:1490000
Cons ci ratio: 1.035502e-02	ci left: 8.728646e-02	ci right 8.819568e-02	k: 130733	n:1490000
KS ci ratio: 1.111397e-01	ci left: 7.878559e-04	ci right 8.812160e-04	k: 1242	n:1490000
SECISBP2L   1490000 perm   1134 sec   (1314 perm/sec)   p_kst 8.335570e-04   p_cons 8.774027e-02   p_joint 1.531544e-03

Joint ci ratio: 8.167493e-02	ci left: 1.470695e-03	ci right 1.596576e-03	k: 2299	n:1500000
Cons ci ratio: 1.031994e-02	ci left: 8.729569e-02	ci right 8.820190e-02	k: 131622	n:1500000
KS ci ratio: 1.107838e-01	ci left: 7.877889e-04	ci right 8.808225e-04	k: 1250	n:1500000
SECISBP2L   1500000 perm   1147 sec   (1308 perm/sec)   p_kst 8.333333e-04   p_cons 8.774800e-02   p_joint 1.532667e-03

Joint ci ratio: 1.039770e-01	ci left: 8.914918e-04	ci right 9.899087e-04	k: 1419	n:1510000
Cons ci ratio: 1.028497e-02	ci left: 8.730877e-02	ci right 8.821202e-02	k: 132517	n:1510000
KS ci ratio: 1.103874e-01	ci left: 7.883671e-04	ci right 8.811143e-04	k: 1259	n:1510000
SECISBP2L   1510000 perm   1161 sec   (1301 perm/sec)   p_kst 8.337748e-04   p_cons 8.775960e-02   p_joint 9.397351e-04

Joint ci ratio: 1.036491e-01	ci left: 8.913940e-04	ci right 9.894709e-04	k: 1428	n:1520000
Cons ci ratio: 1.025048e-02	ci left: 8.731970e-02	ci right 8.822002e-02	k: 133409	n:1520000
KS ci ratio: 1.100821e-01	ci left: 7.876588e-04	ci right 8.800497e-04	k: 1266	n:1520000
SECISBP2L   1520000 perm   1174 sec   (1295 perm/sec)   p_kst 8.328947e-04   p_cons 8.776908e-02   p_joint 9.394737e-04

Joint ci ratio: 1.031449e-01	ci left: 8.944817e-04	ci right 9.923905e-04	k: 1442	n:1530000
Cons ci ratio: 1.021633e-02	ci left: 8.733050e-02	ci right 8.822792e-02	k: 134301	n:1530000
KS ci ratio: 1.096501e-01	ci left: 7.888671e-04	ci right 8.810132e-04	k: 1276	n:1530000
SECISBP2L   1530000 perm   1187 sec   (1289 perm/sec)   p_kst 8.339869e-04   p_cons 8.777843e-02   p_joint 9.424837e-04

Joint ci ratio: 1.027540e-01	ci left: 8.956324e-04	ci right 9.932731e-04	k: 1453	n:1540000
Cons ci ratio: 1.018301e-02	ci left: 8.733340e-02	ci right 8.822790e-02	k: 135181	n:1540000
KS ci ratio: 1.092233e-01	ci left: 7.900603e-04	ci right 8.819635e-04	k: 1286	n:1540000
SECISBP2L   1540000 perm   1201 sec   (1282 perm/sec)   p_kst 8.350649e-04   p_cons 8.777987e-02   p_joint 9.435065e-04

Joint ci ratio: 1.022278e-01	ci left: 8.992835e-04	ci right 9.967902e-04	k: 1468	n:1550000
Cons ci ratio: 1.015031e-02	ci left: 8.733175e-02	ci right 8.822334e-02	k: 136054	n:1550000
KS ci ratio: 1.087175e-01	ci left: 7.924942e-04	ci right 8.842262e-04	k: 1298	n:1550000
SECISBP2L   1550000 perm   1215 sec   (1276 perm/sec)   p_kst 8.374194e-04   p_cons 8.777677e-02   p_joint 9.470968e-04

Joint ci ratio: 1.019161e-01	ci left: 8.991408e-04	ci right 9.963170e-04	k: 1477	n:1560000
Cons ci ratio: 1.011868e-02	ci left: 8.731797e-02	ci right 8.820663e-02	k: 136908	n:1560000
KS ci ratio: 1.083428e-01	ci left: 7.930267e-04	ci right 8.844838e-04	k: 1307	n:1560000
SECISBP2L   1560000 perm   1228 sec   (1270 perm/sec)   p_kst 8.378205e-04   p_cons 8.776154e-02   p_joint 9.467949e-04

Joint ci ratio: 1.015389e-01	ci left: 9.002420e-04	ci right 9.971555e-04	k: 1488	n:1570000
Cons ci ratio: 1.008671e-02	ci left: 8.731455e-02	ci right 8.820035e-02	k: 137778	n:1570000
KS ci ratio: 1.079309e-01	ci left: 7.941728e-04	ci right 8.853918e-04	k: 1317	n:1570000
SECISBP2L   1570000 perm   1242 sec   (1264 perm/sec)   p_kst 8.388535e-04   p_cons 8.775669e-02   p_joint 9.477707e-04

Joint ci ratio: 1.013351e-01	ci left: 8.982453e-04	ci right 9.947383e-04	k: 1494	n:1580000
Cons ci ratio: 1.005453e-02	ci left: 8.731938e-02	ci right 8.820239e-02	k: 138661	n:1580000
KS ci ratio: 1.076862e-01	ci left: 7.928414e-04	ci right 8.836879e-04	k: 1323	n:1580000
SECISBP2L   1580000 perm   1256 sec   (1258 perm/sec)   p_kst 8.373418e-04   p_cons 8.776013e-02   p_joint 9.455696e-04

Joint ci ratio: 1.011662e-01	ci left: 8.956609e-04	ci right 9.917064e-04	k: 1499	n:1590000
Cons ci ratio: 1.002402e-02	ci left: 8.730219e-02	ci right 8.818233e-02	k: 139509	n:1590000
KS ci ratio: 1.075240e-01	ci left: 7.903029e-04	ci right 8.807136e-04	k: 1327	n:1590000
SECISBP2L   1590000 perm   1270 sec   (1252 perm/sec)   p_kst 8.345912e-04   p_cons 8.774151e-02   p_joint 9.427673e-04

Joint ci ratio: 1.008975e-01	ci left: 8.949367e-04	ci right 9.906345e-04	k: 1507	n:1600000
Cons ci ratio: 9.992003e-03	ci left: 8.731391e-02	ci right 8.819134e-02	k: 140403	n:1600000
KS ci ratio: 1.072016e-01	ci left: 7.902293e-04	ci right 8.803433e-04	k: 1335	n:1600000
SECISBP2L   1600000 perm   1284 sec   (1246 perm/sec)   p_kst 8.343750e-04   p_cons 8.775187e-02   p_joint 9.418750e-04

Joint ci ratio: 1.007641e-01	ci left: 8.917998e-04	ci right 9.870287e-04	k: 1511	n:1610000
Cons ci ratio: 9.961253e-03	ci left: 8.730999e-02	ci right 8.818466e-02	k: 141272	n:1610000
KS ci ratio: 1.070416e-01	ci left: 7.877389e-04	ci right 8.774264e-04	k: 1339	n:1610000
SECISBP2L   1610000 perm   1298 sec   (1241 perm/sec)   p_kst 8.316770e-04   p_cons 8.774658e-02   p_joint 9.385093e-04

Joint ci ratio: 1.004326e-01	ci left: 8.923124e-04	ci right 9.872640e-04	k: 1521	n:1620000
Cons ci ratio: 9.930862e-03	ci left: 8.730489e-02	ci right 8.817683e-02	k: 142139	n:1620000
KS ci ratio: 1.066839e-01	ci left: 7.882834e-04	ci right 8.777142e-04	k: 1348	n:1620000
SECISBP2L   1620000 perm   1312 sec   (1235 perm/sec)   p_kst 8.320988e-04   p_cons 8.774012e-02   p_joint 9.388889e-04

Joint ci ratio: 1.000715e-01	ci left: 8.934174e-04	ci right 9.881248e-04	k: 1532	n:1630000
Cons ci ratio: 9.898168e-03	ci left: 8.734148e-02	ci right 8.821090e-02	k: 143074	n:1630000
KS ci ratio: 1.062907e-01	ci left: 7.894189e-04	ci right 8.786277e-04	k: 1358	n:1630000
SECISBP2L   1630000 perm   1326 sec   (1229 perm/sec)   p_kst 8.331288e-04   p_cons 8.777546e-02   p_joint 9.398773e-04

Joint ci ratio: 9.971437e-02	ci left: 8.945095e-04	ci right 9.889744e-04	k: 1543	n:1640000
Cons ci ratio: 9.868274e-03	ci left: 8.733748e-02	ci right 8.820422e-02	k: 143943	n:1640000
KS ci ratio: 1.059017e-01	ci left: 7.905411e-04	ci right 8.795295e-04	k: 1368	n:1640000
SECISBP2L   1640000 perm   1340 sec   (1224 perm/sec)   p_kst 8.341463e-04   p_cons 8.777012e-02   p_joint 9.408537e-04

Joint ci ratio: 9.952129e-02	ci left: 8.926340e-04	ci right 9.867076e-04	k: 1549	n:1650000
Cons ci ratio: 9.837643e-03	ci left: 8.734986e-02	ci right 8.821401e-02	k: 144839	n:1650000
KS ci ratio: 1.057089e-01	ci left: 7.887001e-04	ci right 8.773095e-04	k: 1373	n:1650000
SECISBP2L   1650000 perm   1354 sec   (1218 perm/sec)   p_kst 8.321212e-04   p_cons 8.778121e-02   p_joint 9.387879e-04

Joint ci ratio: 9.926549e-02	ci left: 8.919561e-04	ci right 9.857026e-04	k: 1557	n:1660000
Cons ci ratio: 9.806559e-03	ci left: 8.737411e-02	ci right 8.823576e-02	k: 145755	n:1660000
KS ci ratio: 1.054025e-01	ci left: 7.886409e-04	ci right 8.769710e-04	k: 1381	n:1660000
SECISBP2L   1660000 perm   1369 sec   (1213 perm/sec)   p_kst 8.319277e-04   p_cons 8.780422e-02   p_joint 9.379518e-04

Joint ci ratio: 9.907501e-02	ci left: 8.901187e-04	ci right 9.834822e-04	k: 1563	n:1670000
Cons ci ratio: 9.774817e-03	ci left: 8.741361e-02	ci right 8.827285e-02	k: 146697	n:1670000
KS ci ratio: 1.052125e-01	ci left: 7.868336e-04	ci right 8.747926e-04	k: 1386	n:1670000
SECISBP2L   1670000 perm   1383 sec   (1207 perm/sec)   p_kst 8.299401e-04   p_cons 8.784251e-02   p_joint 9.359281e-04

Joint ci ratio: 9.866569e-02	ci left: 8.923672e-04	ci right 9.855574e-04	k: 1576	n:1680000
Cons ci ratio: 9.746530e-03	ci left: 8.740098e-02	ci right 8.825759e-02	k: 147552	n:1680000
KS ci ratio: 1.047227e-01	ci left: 7.896851e-04	ci right 8.775266e-04	k: 1399	n:1680000
SECISBP2L   1680000 perm   1398 sec   (1202 perm/sec)   p_kst 8.327381e-04   p_cons 8.782857e-02   p_joint 9.380952e-04

Joint ci ratio: 9.838536e-02	ci left: 8.922812e-04	ci right 9.851824e-04	k: 1585	n:1690000
Cons ci ratio: 9.717016e-03	ci left: 8.741270e-02	ci right 8.826682e-02	k: 148448	n:1690000
KS ci ratio: 1.043877e-01	ci left: 7.901986e-04	ci right 8.777987e-04	k: 1408	n:1690000
SECISBP2L   1690000 perm   1412 sec   (1197 perm/sec)   p_kst 8.331361e-04   p_cons 8.783905e-02   p_joint 9.378698e-04

Joint ci ratio: 9.801518e-02	ci left: 8.939180e-04	ci right 9.866193e-04	k: 1597	n:1700000
Cons ci ratio: 9.688764e-03	ci left: 8.740786e-02	ci right 8.825943e-02	k: 149316	n:1700000
KS ci ratio: 1.040559e-01	ci left: 7.907065e-04	ci right 8.780673e-04	k: 1417	n:1700000
SECISBP2L   1700000 perm   1427 sec   (1191 perm/sec)   p_kst 8.335294e-04   p_cons 8.783294e-02   p_joint 9.394118e-04

Joint ci ratio: 9.783178e-02	ci left: 8.921132e-04	ci right 9.844443e-04	k: 1603	n:1710000
Cons ci ratio: 9.662450e-03	ci left: 8.737507e-02	ci right 8.822399e-02	k: 150136	n:1710000
KS ci ratio: 1.038365e-01	ci left: 7.895000e-04	ci right 8.765324e-04	k: 1423	n:1710000
SECISBP2L   1710000 perm   1441 sec   (1186 perm/sec)   p_kst 8.321637e-04   p_cons 8.779883e-02   p_joint 9.374269e-04

Joint ci ratio: 9.771018e-02	ci left: 8.891951e-04	ci right 9.811033e-04	k: 1607	n:1720000
Cons ci ratio: 9.633272e-03	ci left: 8.739371e-02	ci right 8.824024e-02	k: 151044	n:1720000
KS ci ratio: 1.038003e-01	ci left: 7.854761e-04	ci right 8.720328e-04	k: 1424	n:1720000
SECISBP2L   1720000 perm   1456 sec   (1181 perm/sec)   p_kst 8.279070e-04   p_cons 8.781628e-02   p_joint 9.343023e-04

Joint ci ratio: 9.737763e-02	ci left: 8.902586e-04	ci right 9.819456e-04	k: 1618	n:1730000
Cons ci ratio: 9.606470e-03	ci left: 8.737696e-02	ci right 8.822095e-02	k: 151891	n:1730000
KS ci ratio: 1.034740e-01	ci left: 7.860033e-04	ci right 8.723293e-04	k: 1433	n:1730000
SECISBP2L   1730000 perm   1471 sec   (1176 perm/sec)   p_kst 8.283237e-04   p_cons 8.779827e-02   p_joint 9.352601e-04

Joint ci ratio: 9.719779e-02	ci left: 8.885065e-04	ci right 9.798344e-04	k: 1624	n:1740000
Cons ci ratio: 9.578653e-03	ci left: 8.738105e-02	ci right 8.822263e-02	k: 152774	n:1740000
KS ci ratio: 1.032942e-01	ci left: 7.842852e-04	ci right 8.702638e-04	k: 1438	n:1740000
SECISBP2L   1740000 perm   1486 sec   (1171 perm/sec)   p_kst 8.264368e-04   p_cons 8.780115e-02   p_joint 9.333333e-04

Joint ci ratio: 9.690007e-02	ci left: 8.890049e-04	ci right 9.800883e-04	k: 1634	n:1750000
Cons ci ratio: 9.551179e-03	ci left: 8.738338e-02	ci right 8.822256e-02	k: 153654	n:1750000
KS ci ratio: 1.029727e-01	ci left: 7.848138e-04	ci right 8.705663e-04	k: 1447	n:1750000
SECISBP2L   1750000 perm   1501 sec   (1166 perm/sec)   p_kst 8.268571e-04   p_cons 8.780229e-02   p_joint 9.337143e-04

Joint ci ratio: 9.675236e-02	ci left: 8.867258e-04	ci right 9.774293e-04	k: 1639	n:1760000
Cons ci ratio: 9.523500e-03	ci left: 8.739306e-02	ci right 8.822989e-02	k: 154547	n:1760000
KS ci ratio: 1.028308e-01	ci left: 7.825688e-04	ci right 8.679511e-04	k: 1451	n:1760000
SECISBP2L   1760000 perm   1516 sec   (1161 perm/sec)   p_kst 8.244318e-04   p_cons 8.781080e-02   p_joint 9.312500e-04

Joint ci ratio: 9.654660e-02	ci left: 8.855752e-04	ci right 9.759575e-04	k: 1646	n:1770000
Cons ci ratio: 9.496028e-03	ci left: 8.740320e-02	ci right 8.823769e-02	k: 155441	n:1770000
KS ci ratio: 1.026191e-01	ci left: 7.814503e-04	ci right 8.665244e-04	k: 1457	n:1770000
SECISBP2L   1770000 perm   1531 sec   (1156 perm/sec)   p_kst 8.231638e-04   p_cons 8.781977e-02   p_joint 9.299435e-04

Joint ci ratio: 9.616772e-02	ci left: 8.877275e-04	ci right 9.779539e-04	k: 1659	n:1780000
Cons ci ratio: 9.469588e-03	ci left: 8.739978e-02	ci right 8.823190e-02	k: 156311	n:1780000
KS ci ratio: 1.022341e-01	ci left: 7.830816e-04	ci right 8.679942e-04	k: 1468	n:1780000
SECISBP2L   1780000 perm   1546 sec   (1151 perm/sec)   p_kst 8.247191e-04   p_cons 8.781517e-02   p_joint 9.320225e-04

Joint ci ratio: 9.587934e-02	ci left: 8.882206e-04	ci right 9.782111e-04	k: 1669	n:1790000
Cons ci ratio: 9.444620e-03	ci left: 8.737521e-02	ci right 8.820489e-02	k: 157143	n:1790000
KS ci ratio: 1.018878e-01	ci left: 7.841508e-04	ci right 8.688742e-04	k: 1478	n:1790000
SECISBP2L   1790000 perm   1561 sec   (1147 perm/sec)   p_kst 8.256983e-04   p_cons 8.778939e-02   p_joint 9.324022e-04

Joint ci ratio: 9.550822e-02	ci left: 8.903354e-04	ci right 9.801716e-04	k: 1682	n:1800000
Cons ci ratio: 9.417692e-03	ci left: 8.738751e-02	ci right 8.821493e-02	k: 158041	n:1800000
KS ci ratio: 1.014429e-01	ci left: 7.868331e-04	ci right 8.714529e-04	k: 1491	n:1800000
SECISBP2L   1800000 perm   1575 sec   (1143 perm/sec)   p_kst 8.283333e-04   p_cons 8.780056e-02   p_joint 9.344444e-04

Joint ci ratio: 9.525388e-02	ci left: 8.902702e-04	ci right 9.798472e-04	k: 1691	n:1810000
Cons ci ratio: 9.390248e-03	ci left: 8.741235e-02	ci right 8.823759e-02	k: 158962	n:1810000
KS ci ratio: 1.012058e-01	ci left: 7.862553e-04	ci right 8.706036e-04	k: 1498	n:1810000
SECISBP2L   1810000 perm   1591 sec   (1138 perm/sec)   p_kst 8.276243e-04   p_cons 8.782431e-02   p_joint 9.342541e-04

Joint ci ratio: 9.516972e-02	ci left: 8.869877e-04	ci right 9.761511e-04	k: 1694	n:1820000
Cons ci ratio: 9.364006e-03	ci left: 8.742048e-02	ci right 8.824347e-02	k: 159853	n:1820000
KS ci ratio: 1.011048e-01	ci left: 7.835418e-04	ci right 8.675102e-04	k: 1501	n:1820000
SECISBP2L   1820000 perm   1606 sec   (1133 perm/sec)   p_kst 8.247253e-04   p_cons 8.783132e-02   p_joint 9.307692e-04

Joint ci ratio: 9.494595e-02	ci left: 8.864084e-04	ci right 9.752925e-04	k: 1702	n:1830000
Cons ci ratio: 9.338460e-03	ci left: 8.742034e-02	ci right 8.824107e-02	k: 160729	n:1830000
KS ci ratio: 1.008700e-01	ci left: 7.829887e-04	ci right 8.666914e-04	k: 1508	n:1830000
SECISBP2L   1830000 perm   1621 sec   (1129 perm/sec)   p_kst 8.240437e-04   p_cons 8.783005e-02   p_joint 9.300546e-04

Joint ci ratio: 9.466840e-02	ci left: 8.868969e-04	ci right 9.755556e-04	k: 1712	n:1840000
Cons ci ratio: 9.312995e-03	ci left: 8.742238e-02	ci right 8.824088e-02	k: 161609	n:1840000
KS ci ratio: 1.005706e-01	ci left: 7.835014e-04	ci right 8.669956e-04	k: 1517	n:1840000
SECISBP2L   1840000 perm   1637 sec   (1124 perm/sec)   p_kst 8.244565e-04   p_cons 8.783098e-02   p_joint 9.304348e-04

Joint ci ratio: 9.436585e-02	ci left: 8.879083e-04	ci right 9.763687e-04	k: 1723	n:1850000
Cons ci ratio: 9.287926e-03	ci left: 8.742116e-02	ci right 8.823743e-02	k: 162483	n:1850000
KS ci ratio: 1.002737e-01	ci left: 7.840090e-04	ci right 8.672961e-04	k: 1526	n:1850000
SECISBP2L   1850000 perm   1653 sec   (1119 perm/sec)   p_kst 8.248649e-04   p_cons 8.782865e-02   p_joint 9.313514e-04

Joint ci ratio: 9.403907e-02	ci left: 8.894342e-04	ci right 9.777229e-04	k: 1735	n:1860000
Cons ci ratio: 9.262748e-03	ci left: 8.742532e-02	ci right 8.823941e-02	k: 163367	n:1860000
KS ci ratio: 9.994694e-02	ci left: 7.850356e-04	ci right 8.681441e-04	k: 1536	n:1860000
SECISBP2L   1860000 perm   1668 sec   (1115 perm/sec)   p_kst 8.258065e-04   p_cons 8.783172e-02   p_joint 9.327957e-04

Outputting figure to mutsig2_images.part000000000154/SECISBP2L.2_3239_1860000_0.00082581_0.087832_0.0009328.png
                gene_name: SECISBP2L
               theta_stop: 0.100 
                    nperm: 1860000 
                     p_ks: 0.00083 
        ci_ks_bounds_left: 0.00079 
       ci_ks_bounds_right: 0.00087 
                   p_cons: 0.088 
      ci_cons_bounds_left: 0.087 
     ci_cons_bounds_right: 0.088 
                  p_joint: 0.00093 
     ci_joint_bounds_left: 0.00089 
    ci_joint_bounds_right: 0.00098 

Current progress: 83 percent done.
SEL1L3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.059483e-02	ci left: 6.118092e-01	ci right 6.309201e-01	k: 6214	n:10000
Cons ci ratio: 1.330145e-02	ci left: 8.906714e-01	ci right 9.026964e-01	k: 8968	n:10000
KS ci ratio: 4.480377e-02	ci left: 4.237578e-01	ci right 4.432810e-01	k: 4335	n:10000
SEL1L3   10000 perm   2 sec   (5517 perm/sec)   p_kst 4.335000e-01   p_cons 8.968000e-01   p_joint 6.214000e-01

Outputting figure to mutsig2_images.part000000000154/SEL1L3.2_3495_10000_0.4335_0.8968_0.6214.png
                gene_name: SEL1L3
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 85 percent done.
SELL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.955787e-02	ci left: 7.927334e-01	ci right 8.084911e-01	k: 8007	n:10000
KS ci ratio: 8.603533e-02	ci left: 1.644533e-01	ci right 1.793384e-01	k: 1718	n:10000
SELL   10000 perm   2 sec   (6519 perm/sec)   p_kst 1.718000e-01   p_cons 8.007000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000154/SELL.2_1194_10000_0.1718_0.8007_1.png
                gene_name: SELL
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
SEMA4C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.941688e-02	ci left: 7.950668e-01	ci right 8.107563e-01	k: 8030	n:10000
Cons ci ratio: 2.329554e-02	ci left: 7.302734e-01	ci right 7.475872e-01	k: 7390	n:10000
KS ci ratio: 5.215377e-02	ci left: 3.514787e-01	ci right 3.704024e-01	k: 3609	n:10000
SEMA4C   10000 perm   2 sec   (5878 perm/sec)   p_kst 3.609000e-01   p_cons 7.390000e-01   p_joint 8.030000e-01

Outputting figure to mutsig2_images.part000000000154/SEMA4C.2_2558_10000_0.3609_0.739_0.803.png
                gene_name: SEMA4C
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 88 percent done.
SEMG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.842438e-02	ci left: 2.385720e-01	ci right 2.555756e-01	k: 2470	n:10000
Cons ci ratio: 9.874809e-03	ci left: 9.355802e-01	ci right 9.449613e-01	k: 9404	n:10000
KS ci ratio: 1.189212e-01	ci left: 9.214310e-02	ci right 1.038923e-01	k: 979	n:10000
SEMG1   10000 perm   1 sec   (6703 perm/sec)   p_kst 9.790000e-02   p_cons 9.404000e-01   p_joint 2.470000e-01

Joint ci ratio: 3.706272e-02	ci left: 3.519991e-01	ci right 3.653420e-01	k: 7173	n:20000
Cons ci ratio: 6.829752e-03	ci left: 9.394917e-01	ci right 9.459789e-01	k: 18856	n:20000
KS ci ratio: 8.402037e-02	ci left: 9.401126e-02	ci right 1.023060e-01	k: 1962	n:20000
SEMG1   20000 perm   3 sec   (5827 perm/sec)   p_kst 9.810000e-02   p_cons 9.428000e-01   p_joint 3.586500e-01

Outputting figure to mutsig2_images.part000000000154/SEMG1.2_1397_20000_0.0981_0.9428_0.35865.png
                gene_name: SEMG1
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.098 
        ci_ks_bounds_left: 0.094 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 90 percent done.
SEPN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.535413e-02	ci left: 3.246562e-01	ci right 3.432406e-01	k: 3339	n:10000
Cons ci ratio: 4.951351e-02	ci left: 3.756466e-01	ci right 3.948203e-01	k: 3852	n:10000
KS ci ratio: 9.796826e-02	ci left: 1.311983e-01	ci right 1.448133e-01	k: 1379	n:10000
SEPN1   10000 perm   2 sec   (6247 perm/sec)   p_kst 1.379000e-01   p_cons 3.852000e-01   p_joint 3.339000e-01

Outputting figure to mutsig2_images.part000000000154/SEPN1.2_1825_10000_0.1379_0.3852_0.3339.png
                gene_name: SEPN1
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 92 percent done.
SEPSECS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.983924e-02	ci left: 7.880677e-01	ci right 8.039595e-01	k: 7961	n:10000
Cons ci ratio: 3.393915e-02	ci left: 5.617312e-01	ci right 5.812271e-01	k: 5715	n:10000
KS ci ratio: 2.491176e-02	ci left: 7.033165e-01	ci right 7.211597e-01	k: 7123	n:10000
SEPSECS   10000 perm   2 sec   (6401 perm/sec)   p_kst 7.123000e-01   p_cons 5.715000e-01   p_joint 7.961000e-01

Outputting figure to mutsig2_images.part000000000154/SEPSECS.2_1550_10000_0.7123_0.5715_0.7961.png
                gene_name: SEPSECS
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 94 percent done.
SEPT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.152503e-02	ci left: 9.150246e-01	ci right 9.257290e-01	k: 9205	n:10000
Cons ci ratio: 4.558764e-02	ci left: 4.152841e-01	ci right 4.347596e-01	k: 4250	n:10000
KS ci ratio: 3.851041e-02	ci left: 4.989503e-01	ci right 5.186445e-01	k: 5088	n:10000
SEPT1   10000 perm   2 sec   (6368 perm/sec)   p_kst 5.088000e-01   p_cons 4.250000e-01   p_joint 9.205000e-01

Outputting figure to mutsig2_images.part000000000154/SEPT1.2_1148_10000_0.5088_0.425_0.9205.png
                gene_name: SEPT1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 96 percent done.
SEPT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.264646e-02	ci left: 2.172413e-01	ci right 2.337190e-01	k: 2254	n:10000
KS ci ratio: 1.148566e-02	ci left: 9.155397e-01	ci right 9.262136e-01	k: 9210	n:10000
SEPT2   10000 perm   2 sec   (6588 perm/sec)   p_kst 9.210000e-01   p_cons 2.254000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000154/SEPT2.2_1130_10000_0.921_0.2254_1.png
                gene_name: SEPT2
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
SEPT8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.852541e-03	ci left: 9.824212e-01	ci right 9.872903e-01	k: 9850	n:10000
Cons ci ratio: 3.484151e-02	ci left: 5.488018e-01	ci right 5.683640e-01	k: 5586	n:10000
KS ci ratio: 1.949046e-02	ci left: 7.938493e-01	ci right 8.095745e-01	k: 8018	n:10000
SEPT8   10000 perm   2 sec   (6596 perm/sec)   p_kst 8.018000e-01   p_cons 5.586000e-01   p_joint 9.850000e-01

Outputting figure to mutsig2_images.part000000000154/SEPT8.2_1547_10000_0.8018_0.5586_0.985.png
                gene_name: SEPT8
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000154
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 154 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1424>
Subject: Job 8004536: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1424>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000155> was used as the working directory.
Started at Sun Nov 11 17:38:21 2012
Results reported at Sun Nov 11 20:58:23 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000155.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000155.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 155  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000155.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  21993.71 sec.
    Max Memory :      4765 MB
    Max Swap   :      7123 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
155
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 155
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 155: processing genes 13933 - 14023
Calculating significance of each gene.
Using projection method.
13933	SERF2	1
13934	SERGEF	1
13935	SERHL2	6.105439e-01
13936	SERINC1	6.691896e-01
13937	SERINC2	6.170861e-01
13938	SERINC3	8.604780e-01
13939	SERINC4	4.807299e-01
13940	SERINC5	1
13941	SERP1	2.358588e-01
13942	SERP2	1
13943	SERPINA1	6.398180e-01
13944	SERPINA10	1
13945	SERPINA11	2.187719e-01
13946	SERPINA12	2.821484e-01
13947	SERPINA3	7.478830e-02
13948	SERPINA4	4.549347e-02
13949	SERPINA5	1
13950	SERPINA6	6.979564e-01
13951	SERPINA7	1.143673e-01
13952	SERPINA9	5.705214e-01
13953	SERPINB1	5.753576e-01
13954	SERPINB10	1
13955	SERPINB11	2.027235e-01
13956	SERPINB12	7.401862e-01
13957	SERPINB13	3.075210e-01
13958	SERPINB2	5.355998e-02
13959	SERPINB3	1
13960	SERPINB4	1
13961	SERPINB5	3.486340e-01
13962	SERPINB6	8.430223e-02
13963	SERPINB7	7.778970e-01
13964	SERPINB8	3.602812e-01
13965	SERPINB9	2.414914e-01
13966	SERPINC1	1.790872e-01
13967	SERPIND1	6.997037e-01
13968	SERPINE1	1
13969	SERPINE2	6.993134e-01
13970	SERPINE3	1
13971	SERPINF1	6.395351e-01
13972	SERPINF2	2.855931e-01
13973	SERPING1	3.020151e-01
13974	SERPINH1	7.233892e-01
13975	SERPINI1	6.942725e-01
13976	SERPINI2	1
13977	SERTAD1	3.815926e-01
13978	SERTAD2	1
13979	SERTAD3	5.071060e-01
13980	SERTAD4	1
13981	SESN1	2.923422e-01
13982	SESN2	5.760343e-01
13983	SESN3	3.485783e-01
13984	SESTD1	8.380746e-01
13985	SET	1
13986	SETBP1	1.251520e-01
13987	SETD1A	8.564106e-01
13988	SETD2	9.086126e-01
13989	SETD3	5.961837e-01
13990	SETD4	2.194168e-01
13991	SETD5	6.458899e-01
13992	SETD6	1
13993	SETD7	1
13994	SETD8	6.356794e-01
13995	SETDB1	1
13996	SETDB2	1
13997	SETMAR	1
13998	SETX	7.195896e-01
13999	SEZ6	7.309471e-01
14000/18094 14000	SEZ6L	7.486618e-02
14001	SEZ6L2	1
14002	SF1	7.108803e-01
14003	SF3A1	8.685844e-01
14004	SF3A2	1.440402e-01
14005	SF3A3	5.220864e-01
14006	SF3B1	7.582572e-01
14007	SF3B14	1
14008	SF3B2	4.716522e-01
14009	SF3B3	1
14010	SF3B4	6.865115e-01
14011	SF3B5	1
14012	SF4	3.995568e-01
14013	SFI1	9.311947e-01
14014	SFMBT1	9.627144e-01
14015	SFMBT2	9.521202e-01
14016	SFN	3.550941e-01
14017	SFPQ	7.237057e-01
14018	SFRP1	4.904842e-01
14019	SFRP2	1
14020	SFRP4	1.290402e-01
14021	SFRP5	6.881720e-01
14022	SFRS1	1.797533e-03
14023	SFRS11	2.040191e-01
Done

Running MutSig 2:
Scatter job 155: processing genes 13933 - 14023
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SETBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.400154e-02	ci left: 5.608290e-01	ci right 5.803299e-01	k: 5706	n:10000
Cons ci ratio: 4.573716e-02	ci left: 4.136894e-01	ci right 4.331553e-01	k: 4234	n:10000
KS ci ratio: 5.872968e-02	ci left: 2.990576e-01	ci right 3.172542e-01	k: 3081	n:10000
SETBP1   10000 perm   3 sec   (3487 perm/sec)   p_kst 3.081000e-01   p_cons 4.234000e-01   p_joint 5.706000e-01

Outputting figure to mutsig2_images.part000000000155/SETBP1.12_5004_10000_0.3081_0.4234_0.5706.png
                gene_name: SETBP1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 2 percent done.
SETX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.998681e-02	ci left: 6.212544e-01	ci right 6.402693e-01	k: 6308	n:10000
KS ci ratio: 1.508864e-02	ci left: 8.642720e-01	ci right 8.775111e-01	k: 8710	n:10000
SETX   10000 perm   3 sec   (3221 perm/sec)   p_kst 8.710000e-01   p_cons 6.308000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000155/SETX.12_8130_10000_0.871_0.6308_1.png
                gene_name: SETX
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 4 percent done.
SFMBT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.772737e-01	ci left: 5.108009e-03	ci right 8.389267e-03	k: 66	n:10000
Cons ci ratio: 1.959510e+00	ci left: 6.187149e-05	ci right 8.764745e-04	k: 3	n:10000
KS ci ratio: 1.589065e-02	ci left: 8.519224e-01	ci right 8.656679e-01	k: 8589	n:10000
SFMBT2   10000 perm   2 sec   (4539 perm/sec)   p_kst 8.589000e-01   p_cons 3.000000e-04   p_joint 6.600000e-03

Joint ci ratio: 4.579519e-01	ci left: 2.817812e-03	ci right 4.531487e-03	k: 72	n:20000
Cons ci ratio: 1.600053e+00	ci left: 8.117914e-05	ci right 5.833193e-04	k: 5	n:20000
KS ci ratio: 1.135347e-02	ci left: 8.514124e-01	ci right 8.611838e-01	k: 17127	n:20000
SFMBT2   20000 perm   5 sec   (4090 perm/sec)   p_kst 8.563500e-01   p_cons 2.500000e-04   p_joint 3.600000e-03

Joint ci ratio: 4.036765e-01	ci left: 2.502807e-03	ci right 3.796384e-03	k: 93	n:30000
Cons ci ratio: 1.385721e+00	ci left: 9.381708e-05	ci right 4.806964e-04	k: 7	n:30000
KS ci ratio: 9.294324e-03	ci left: 8.516726e-01	ci right 8.596584e-01	k: 25671	n:30000
SFMBT2   30000 perm   8 sec   (3920 perm/sec)   p_kst 8.557000e-01   p_cons 2.333333e-04   p_joint 3.100000e-03

Joint ci ratio: 3.802345e-01	ci left: 2.147477e-03	ci right 3.176844e-03	k: 105	n:40000
Cons ci ratio: 1.131423e+00	ci left: 1.372867e-04	ci right 4.919976e-04	k: 11	n:40000
KS ci ratio: 8.040065e-03	ci left: 8.524958e-01	ci right 8.594024e-01	k: 34239	n:40000
SFMBT2   40000 perm   10 sec   (3813 perm/sec)   p_kst 8.559750e-01   p_cons 2.750000e-04   p_joint 2.625000e-03

Joint ci ratio: 3.369208e-01	ci left: 2.245931e-03	ci right 3.173307e-03	k: 134	n:50000
Cons ci ratio: 9.505685e-01	ci left: 1.829184e-04	ci right 5.196081e-04	k: 16	n:50000
KS ci ratio: 7.195139e-03	ci left: 8.527305e-01	ci right 8.589081e-01	k: 42792	n:50000
SFMBT2   50000 perm   13 sec   (3726 perm/sec)   p_kst 8.558400e-01   p_cons 3.200000e-04   p_joint 2.680000e-03

Joint ci ratio: 3.461097e-01	ci left: 1.764866e-03	ci right 2.517926e-03	k: 127	n:60000
Cons ci ratio: 8.763852e-01	ci left: 1.906644e-04	ci right 4.944703e-04	k: 19	n:60000
KS ci ratio: 6.576806e-03	ci left: 8.526780e-01	ci right 8.583209e-01	k: 51331	n:60000
SFMBT2   60000 perm   16 sec   (3649 perm/sec)   p_kst 8.555167e-01   p_cons 3.166667e-04   p_joint 2.116667e-03

Joint ci ratio: 3.936933e-01	ci left: 1.136729e-03	ci right 1.705890e-03	k: 98	n:70000
Cons ci ratio: 7.686270e-01	ci left: 2.311369e-04	ci right 5.271685e-04	k: 25	n:70000
KS ci ratio: 6.089330e-03	ci left: 8.528735e-01	ci right 8.580970e-01	k: 59885	n:70000
SFMBT2   70000 perm   20 sec   (3584 perm/sec)   p_kst 8.555000e-01   p_cons 3.571429e-04   p_joint 1.400000e-03

Joint ci ratio: 4.200369e-01	ci left: 8.599484e-04	ci right 1.327449e-03	k: 86	n:80000
Cons ci ratio: 7.277892e-01	ci left: 2.325847e-04	ci right 5.058080e-04	k: 28	n:80000
KS ci ratio: 5.754077e-03	ci left: 8.505020e-01	ci right 8.554224e-01	k: 68238	n:80000
SFMBT2   80000 perm   23 sec   (3516 perm/sec)   p_kst 8.529750e-01   p_cons 3.500000e-04   p_joint 1.075000e-03

Joint ci ratio: 2.322406e-01	ci left: 2.789208e-03	ci right 3.532276e-03	k: 283	n:90000
Cons ci ratio: 7.039276e-01	ci left: 2.249095e-04	ci right 4.758201e-04	k: 30	n:90000
KS ci ratio: 5.576911e-03	ci left: 8.435357e-01	ci right 8.482642e-01	k: 76132	n:90000
SFMBT2   90000 perm   26 sec   (3457 perm/sec)   p_kst 8.459111e-01   p_cons 3.333333e-04   p_joint 3.144444e-03

Joint ci ratio: 2.466242e-01	ci left: 2.209382e-03	ci right 2.840026e-03	k: 251	n:100000
Cons ci ratio: 6.624817e-01	ci left: 2.354710e-04	ci right 4.750838e-04	k: 34	n:100000
KS ci ratio: 5.296216e-03	ci left: 8.433857e-01	ci right 8.478742e-01	k: 84564	n:100000
SFMBT2   100000 perm   29 sec   (3402 perm/sec)   p_kst 8.456400e-01   p_cons 3.400000e-04   p_joint 2.510000e-03

Joint ci ratio: 2.294893e-01	ci left: 2.341971e-03	ci right 2.957445e-03	k: 290	n:110000
Cons ci ratio: 6.357952e-01	ci left: 2.368418e-04	ci right 4.636035e-04	k: 37	n:110000
KS ci ratio: 5.114710e-03	ci left: 8.401052e-01	ci right 8.444222e-01	k: 92650	n:110000
SFMBT2   110000 perm   33 sec   (3349 perm/sec)   p_kst 8.422727e-01   p_cons 3.363636e-04   p_joint 2.636364e-03

Joint ci ratio: 2.433129e-01	ci left: 1.895866e-03	ci right 2.428651e-03	k: 258	n:120000
Cons ci ratio: 6.047608e-01	ci left: 2.451967e-04	ci right 4.634812e-04	k: 41	n:120000
KS ci ratio: 4.905207e-03	ci left: 8.397480e-01	ci right 8.438855e-01	k: 101019	n:120000
SFMBT2   120000 perm   36 sec   (3293 perm/sec)   p_kst 8.418250e-01   p_cons 3.416667e-04   p_joint 2.150000e-03

Joint ci ratio: 2.387583e-01	ci left: 1.822299e-03	ci right 2.323405e-03	k: 268	n:130000
Cons ci ratio: 5.842557e-01	ci left: 2.459371e-04	ci right 4.543425e-04	k: 44	n:130000
KS ci ratio: 4.797196e-03	ci left: 8.350194e-01	ci right 8.390424e-01	k: 108815	n:130000
SFMBT2   130000 perm   40 sec   (3241 perm/sec)   p_kst 8.370385e-01   p_cons 3.384615e-04   p_joint 2.061538e-03

Joint ci ratio: 2.307497e-01	ci left: 1.819869e-03	ci right 2.301128e-03	k: 287	n:140000
Cons ci ratio: 5.657042e-01	ci left: 2.466803e-04	ci right 4.464041e-04	k: 47	n:140000
KS ci ratio: 4.617291e-03	ci left: 8.354135e-01	ci right 8.392868e-01	k: 117230	n:140000
SFMBT2   140000 perm   44 sec   (3188 perm/sec)   p_kst 8.373571e-01   p_cons 3.357143e-04   p_joint 2.050000e-03

Joint ci ratio: 1.769788e-01	ci left: 2.971462e-03	ci right 3.554667e-03	k: 488	n:150000
Cons ci ratio: 5.435101e-01	ci left: 2.531625e-04	ci right 4.470133e-04	k: 51	n:150000
KS ci ratio: 4.459258e-03	ci left: 8.355697e-01	ci right 8.393106e-01	k: 125617	n:150000
SFMBT2   150000 perm   48 sec   (3136 perm/sec)   p_kst 8.374467e-01   p_cons 3.400000e-04   p_joint 3.253333e-03

Joint ci ratio: 1.748577e-01	ci left: 2.857428e-03	ci right 3.410819e-03	k: 500	n:160000
Cons ci ratio: 5.191226e-01	ci left: 2.643967e-04	ci right 4.544804e-04	k: 56	n:160000
KS ci ratio: 4.315720e-03	ci left: 8.357522e-01	ci right 8.393731e-01	k: 134011	n:160000
SFMBT2   160000 perm   52 sec   (3092 perm/sec)   p_kst 8.375687e-01   p_cons 3.500000e-04   p_joint 3.125000e-03

Joint ci ratio: 1.349987e-01	ci left: 4.602010e-03	ci right 5.273867e-03	k: 838	n:170000
Cons ci ratio: 4.201593e-01	ci left: 4.046599e-04	ci right 6.247235e-04	k: 86	n:170000
KS ci ratio: 4.190001e-03	ci left: 8.356018e-01	ci right 8.391161e-01	k: 142352	n:170000
SFMBT2   170000 perm   56 sec   (3049 perm/sec)   p_kst 8.373647e-01   p_cons 5.058824e-04   p_joint 4.929412e-03

Joint ci ratio: 1.353418e-01	ci left: 4.324830e-03	ci right 4.957953e-03	k: 834	n:180000
Cons ci ratio: 4.063789e-01	ci left: 4.120470e-04	ci right 6.267961e-04	k: 92	n:180000
KS ci ratio: 4.073829e-03	ci left: 8.355253e-01	ci right 8.389416e-01	k: 150703	n:180000
SFMBT2   180000 perm   60 sec   (3007 perm/sec)   p_kst 8.372389e-01   p_cons 5.111111e-04   p_joint 4.633333e-03

Joint ci ratio: 1.307218e-01	ci left: 4.402500e-03	ci right 5.023286e-03	k: 894	n:190000
Cons ci ratio: 3.999812e-01	ci left: 4.045481e-04	ci right 6.111901e-04	k: 95	n:190000
KS ci ratio: 3.967959e-03	ci left: 8.353790e-01	ci right 8.387055e-01	k: 159039	n:190000
SFMBT2   190000 perm   64 sec   (2968 perm/sec)   p_kst 8.370474e-01   p_cons 5.000000e-04   p_joint 4.705263e-03

Joint ci ratio: 1.333050e-01	ci left: 4.017936e-03	ci right 4.596576e-03	k: 860	n:200000
Cons ci ratio: 3.880379e-01	ci left: 4.113490e-04	ci right 6.135874e-04	k: 101	n:200000
KS ci ratio: 3.868088e-03	ci left: 8.353789e-01	ci right 8.386214e-01	k: 167401	n:200000
SFMBT2   200000 perm   68 sec   (2930 perm/sec)   p_kst 8.370050e-01   p_cons 5.050000e-04   p_joint 4.300000e-03

Joint ci ratio: 1.312679e-01	ci left: 3.950913e-03	ci right 4.510527e-03	k: 887	n:210000
Cons ci ratio: 3.824563e-01	ci left: 4.046628e-04	ci right 6.000324e-04	k: 104	n:210000
KS ci ratio: 3.771904e-03	ci left: 8.356331e-01	ci right 8.387957e-01	k: 175816	n:210000
SFMBT2   210000 perm   73 sec   (2892 perm/sec)   p_kst 8.372190e-01   p_cons 4.952381e-04   p_joint 4.223810e-03

Joint ci ratio: 1.286871e-01	ci left: 3.929639e-03	ci right 4.474461e-03	k: 923	n:220000
Cons ci ratio: 3.771087e-01	ci left: 3.986033e-04	ci right 5.876909e-04	k: 107	n:220000
KS ci ratio: 3.687160e-03	ci left: 8.355228e-01	ci right 8.386137e-01	k: 184156	n:220000
SFMBT2   220000 perm   77 sec   (2856 perm/sec)   p_kst 8.370727e-01   p_cons 4.863636e-04   p_joint 4.195455e-03

Joint ci ratio: 1.334984e-01	ci left: 3.485387e-03	ci right 3.988116e-03	k: 858	n:230000
Cons ci ratio: 3.736671e-01	ci left: 3.891476e-04	ci right 5.716522e-04	k: 109	n:230000
KS ci ratio: 3.604775e-03	ci left: 8.356586e-01	ci right 8.386807e-01	k: 192550	n:230000
SFMBT2   230000 perm   82 sec   (2820 perm/sec)   p_kst 8.371739e-01   p_cons 4.739130e-04   p_joint 3.730435e-03

Joint ci ratio: 1.145192e-01	ci left: 4.580014e-03	ci right 5.140380e-03	k: 1165	n:240000
Cons ci ratio: 3.638741e-01	ci left: 3.956169e-04	ci right 5.751394e-04	k: 115	n:240000
KS ci ratio: 3.528160e-03	ci left: 8.357461e-01	ci right 8.387041e-01	k: 200935	n:240000
SFMBT2   240000 perm   86 sec   (2786 perm/sec)   p_kst 8.372292e-01   p_cons 4.791667e-04   p_joint 4.854167e-03

Joint ci ratio: 1.189131e-01	ci left: 4.070555e-03	ci right 4.589040e-03	k: 1081	n:250000
Cons ci ratio: 3.607794e-01	ci left: 3.870636e-04	ci right 5.608597e-04	k: 117	n:250000
KS ci ratio: 3.459276e-03	ci left: 8.355864e-01	ci right 8.384858e-01	k: 209260	n:250000
SFMBT2   250000 perm   91 sec   (2752 perm/sec)   p_kst 8.370400e-01   p_cons 4.680000e-04   p_joint 4.324000e-03

Joint ci ratio: 1.191444e-01	ci left: 3.899048e-03	ci right 4.396720e-03	k: 1077	n:260000
Cons ci ratio: 3.562800e-01	ci left: 3.826756e-04	ci right 5.518619e-04	k: 120	n:260000
KS ci ratio: 3.393648e-03	ci left: 8.354896e-01	ci right 8.383336e-01	k: 217598	n:260000
SFMBT2   260000 perm   96 sec   (2718 perm/sec)   p_kst 8.369154e-01   p_cons 4.615385e-04   p_joint 4.142308e-03

Joint ci ratio: 1.178974e-01	ci left: 3.837292e-03	ci right 4.321597e-03	k: 1100	n:270000
Cons ci ratio: 3.533733e-01	ci left: 3.752493e-04	ci right 5.394881e-04	k: 122	n:270000
KS ci ratio: 3.329719e-03	ci left: 8.355567e-01	ci right 8.383472e-01	k: 225978	n:270000
SFMBT2   270000 perm   101 sec   (2683 perm/sec)   p_kst 8.369556e-01   p_cons 4.518519e-04   p_joint 4.074074e-03

Joint ci ratio: 1.167930e-01	ci left: 3.773037e-03	ci right 4.244464e-03	k: 1121	n:280000
Cons ci ratio: 3.477642e-01	ci left: 3.748754e-04	ci right 5.357593e-04	k: 126	n:280000
KS ci ratio: 3.271667e-03	ci left: 8.354188e-01	ci right 8.381600e-01	k: 234302	n:280000
SFMBT2   280000 perm   106 sec   (2648 perm/sec)   p_kst 8.367929e-01   p_cons 4.500000e-04   p_joint 4.003571e-03

Joint ci ratio: 1.142726e-01	ci left: 3.810368e-03	ci right 4.275492e-03	k: 1171	n:290000
Cons ci ratio: 3.336126e-01	ci left: 3.966369e-04	ci right 5.584463e-04	k: 137	n:290000
KS ci ratio: 3.211311e-03	ci left: 8.357371e-01	ci right 8.384286e-01	k: 242755	n:290000
SFMBT2   290000 perm   111 sec   (2618 perm/sec)   p_kst 8.370862e-01   p_cons 4.724138e-04   p_joint 4.037931e-03

Joint ci ratio: 1.013004e-01	ci left: 4.714984e-03	ci right 5.221318e-03	k: 1489	n:300000
Cons ci ratio: 3.277282e-01	ci left: 3.986989e-04	ci right 5.578767e-04	k: 142	n:300000
KS ci ratio: 3.157253e-03	ci left: 8.357670e-01	ci right 8.384132e-01	k: 251128	n:300000
SFMBT2   300000 perm   116 sec   (2587 perm/sec)   p_kst 8.370933e-01   p_cons 4.733333e-04   p_joint 4.963333e-03

Joint ci ratio: 1.004318e-01	ci left: 4.644634e-03	ci right 5.138885e-03	k: 1515	n:310000
Cons ci ratio: 3.243446e-01	ci left: 3.947230e-04	ci right 5.503476e-04	k: 145	n:310000
KS ci ratio: 3.106644e-03	ci left: 8.357241e-01	ci right 8.383276e-01	k: 259479	n:310000
SFMBT2   310000 perm   121 sec   (2558 perm/sec)   p_kst 8.370290e-01   p_cons 4.677419e-04   p_joint 4.887097e-03

Joint ci ratio: 1.031402e-01	ci left: 4.261900e-03	ci right 4.728393e-03	k: 1437	n:320000
Cons ci ratio: 3.199911e-01	ci left: 3.938771e-04	ci right 5.466567e-04	k: 149	n:320000
KS ci ratio: 3.056361e-03	ci left: 8.358661e-01	ci right 8.384278e-01	k: 267888	n:320000
SFMBT2   320000 perm   127 sec   (2529 perm/sec)   p_kst 8.371500e-01   p_cons 4.656250e-04   p_joint 4.490625e-03

Joint ci ratio: 1.019090e-01	ci left: 4.236090e-03	ci right 4.693891e-03	k: 1472	n:330000
Cons ci ratio: 3.178803e-01	ci left: 3.875167e-04	ci right 5.366358e-04	k: 151	n:330000
KS ci ratio: 3.012488e-03	ci left: 8.356320e-01	ci right 8.381561e-01	k: 276176	n:330000
SFMBT2   330000 perm   132 sec   (2502 perm/sec)   p_kst 8.368970e-01   p_cons 4.575758e-04   p_joint 4.460606e-03

Joint ci ratio: 1.003539e-01	ci left: 4.243372e-03	ci right 4.694550e-03	k: 1518	n:340000
Cons ci ratio: 3.147897e-01	ci left: 3.842422e-04	ci right 5.303744e-04	k: 154	n:340000
KS ci ratio: 2.968335e-03	ci left: 8.356066e-01	ci right 8.380935e-01	k: 284530	n:340000
SFMBT2   340000 perm   137 sec   (2475 perm/sec)   p_kst 8.368529e-01   p_cons 4.529412e-04   p_joint 4.464706e-03

Joint ci ratio: 1.007609e-01	ci left: 4.088693e-03	ci right 4.525291e-03	k: 1506	n:350000
Cons ci ratio: 3.098319e-01	ci left: 3.864301e-04	ci right 5.306225e-04	k: 159	n:350000
KS ci ratio: 2.925578e-03	ci left: 8.356288e-01	ci right 8.380799e-01	k: 292900	n:350000
SFMBT2   350000 perm   143 sec   (2449 perm/sec)   p_kst 8.368571e-01   p_cons 4.542857e-04   p_joint 4.302857e-03

Joint ci ratio: 9.970935e-02	ci left: 4.061776e-03	ci right 4.490709e-03	k: 1538	n:360000
Cons ci ratio: 3.069682e-01	ci left: 3.833843e-04	ci right 5.248593e-04	k: 162	n:360000
KS ci ratio: 2.887345e-03	ci left: 8.353909e-01	ci right 8.378092e-01	k: 301177	n:360000
SFMBT2   360000 perm   149 sec   (2420 perm/sec)   p_kst 8.366028e-01   p_cons 4.500000e-04   p_joint 4.272222e-03

Joint ci ratio: 1.005384e-01	ci left: 3.886105e-03	ci right 4.300100e-03	k: 1513	n:370000
Cons ci ratio: 3.032698e-01	ci left: 3.830058e-04	ci right 5.223099e-04	k: 166	n:370000
KS ci ratio: 2.846990e-03	ci left: 8.355104e-01	ci right 8.378951e-01	k: 309581	n:370000
SFMBT2   370000 perm   154 sec   (2396 perm/sec)   p_kst 8.367054e-01   p_cons 4.486486e-04   p_joint 4.089189e-03

Joint ci ratio: 1.000147e-01	ci left: 3.824882e-03	ci right 4.230107e-03	k: 1529	n:380000
Cons ci ratio: 3.014710e-01	ci left: 3.777905e-04	ci right 5.142264e-04	k: 168	n:380000
KS ci ratio: 2.806548e-03	ci left: 8.357927e-01	ci right 8.381443e-01	k: 318049	n:380000
SFMBT2   380000 perm   160 sec   (2370 perm/sec)   p_kst 8.369711e-01   p_cons 4.421053e-04   p_joint 4.023684e-03

Joint ci ratio: 8.877727e-02	ci left: 4.753453e-03	ci right 5.197541e-03	k: 1939	n:390000
Cons ci ratio: 2.937490e-01	ci left: 3.894583e-04	ci right 5.258351e-04	k: 177	n:390000
KS ci ratio: 2.771054e-03	ci left: 8.357367e-01	ci right 8.380583e-01	k: 326391	n:390000
SFMBT2   390000 perm   166 sec   (2345 perm/sec)   p_kst 8.369000e-01   p_cons 4.538462e-04   p_joint 4.971795e-03

Joint ci ratio: 8.997910e-02	ci left: 4.509941e-03	ci right 4.937282e-03	k: 1888	n:400000
Cons ci ratio: 2.929286e-01	ci left: 3.820377e-04	ci right 5.153730e-04	k: 178	n:400000
KS ci ratio: 2.738026e-03	ci left: 8.355684e-01	ci right 8.378618e-01	k: 334687	n:400000
SFMBT2   400000 perm   172 sec   (2321 perm/sec)   p_kst 8.367175e-01   p_cons 4.450000e-04   p_joint 4.720000e-03

Joint ci ratio: 8.998431e-02	ci left: 4.399931e-03	ci right 4.816874e-03	k: 1888	n:410000
Cons ci ratio: 2.873628e-01	ci left: 3.885508e-04	ci right 5.211148e-04	k: 185	n:410000
KS ci ratio: 2.704602e-03	ci left: 8.355650e-01	ci right 8.378303e-01	k: 343047	n:410000
SFMBT2   410000 perm   179 sec   (2296 perm/sec)   p_kst 8.367000e-01   p_cons 4.512195e-04   p_joint 4.604878e-03

Joint ci ratio: 8.972722e-02	ci left: 4.320765e-03	ci right 4.728974e-03	k: 1899	n:420000
Cons ci ratio: 2.843220e-01	ci left: 3.881407e-04	ci right 5.189120e-04	k: 189	n:420000
KS ci ratio: 2.671488e-03	ci left: 8.356526e-01	ci right 8.378904e-01	k: 351445	n:420000
SFMBT2   420000 perm   185 sec   (2274 perm/sec)   p_kst 8.367738e-01   p_cons 4.500000e-04   p_joint 4.521429e-03

Joint ci ratio: 8.930803e-02	ci left: 4.261199e-03	ci right 4.661802e-03	k: 1917	n:430000
Cons ci ratio: 2.813758e-01	ci left: 3.877567e-04	ci right 5.168048e-04	k: 193	n:430000
KS ci ratio: 2.640888e-03	ci left: 8.355987e-01	ci right 8.378107e-01	k: 359784	n:430000
SFMBT2   430000 perm   191 sec   (2251 perm/sec)   p_kst 8.367070e-01   p_cons 4.488372e-04   p_joint 4.458140e-03

Joint ci ratio: 8.864201e-02	ci left: 4.228793e-03	ci right 4.623231e-03	k: 1946	n:440000
Cons ci ratio: 2.799373e-01	ci left: 3.831695e-04	ci right 5.099240e-04	k: 195	n:440000
KS ci ratio: 2.609925e-03	ci left: 8.356933e-01	ci right 8.378795e-01	k: 368187	n:440000
SFMBT2   440000 perm   197 sec   (2229 perm/sec)   p_kst 8.367886e-01   p_cons 4.431818e-04   p_joint 4.422727e-03

Joint ci ratio: 8.779006e-02	ci left: 4.217400e-03	ci right 4.606801e-03	k: 1984	n:450000
Cons ci ratio: 2.799387e-01	ci left: 3.746544e-04	ci right 4.985927e-04	k: 195	n:450000
KS ci ratio: 2.581999e-03	ci left: 8.355744e-01	ci right 8.377368e-01	k: 376496	n:450000
SFMBT2   450000 perm   204 sec   (2208 perm/sec)   p_kst 8.366578e-01   p_cons 4.333333e-04   p_joint 4.408889e-03

Joint ci ratio: 8.783875e-02	ci left: 4.121457e-03	ci right 4.502220e-03	k: 1982	n:460000
Cons ci ratio: 2.785220e-01	ci left: 3.705530e-04	ci right 4.924054e-04	k: 197	n:460000
KS ci ratio: 2.552613e-03	ci left: 8.357114e-01	ci right 8.378495e-01	k: 384920	n:460000
SFMBT2   460000 perm   210 sec   (2187 perm/sec)   p_kst 8.367826e-01   p_cons 4.282609e-04   p_joint 4.308696e-03

Joint ci ratio: 8.724829e-02	ci left: 4.089952e-03	ci right 4.465135e-03	k: 2009	n:470000
Cons ci ratio: 2.750703e-01	ci left: 3.725689e-04	ci right 4.933034e-04	k: 202	n:470000
KS ci ratio: 2.526134e-03	ci left: 8.356337e-01	ci right 8.377494e-01	k: 393246	n:470000
SFMBT2   470000 perm   217 sec   (2166 perm/sec)   p_kst 8.366936e-01   p_cons 4.297872e-04   p_joint 4.274468e-03

Joint ci ratio: 8.778002e-02	ci left: 3.955827e-03	ci right 4.321031e-03	k: 1985	n:480000
Cons ci ratio: 2.717439e-01	ci left: 3.745098e-04	ci right 4.941551e-04	k: 207	n:480000
KS ci ratio: 2.499623e-03	ci left: 8.356512e-01	ci right 8.377447e-01	k: 401616	n:480000
SFMBT2   480000 perm   224 sec   (2146 perm/sec)   p_kst 8.367000e-01   p_cons 4.312500e-04   p_joint 4.135417e-03

Joint ci ratio: 8.868499e-02	ci left: 3.795251e-03	ci right 4.149430e-03	k: 1945	n:490000
Cons ci ratio: 2.685353e-01	ci left: 3.763798e-04	ci right 4.949637e-04	k: 212	n:490000
KS ci ratio: 2.473819e-03	ci left: 8.356804e-01	ci right 8.377523e-01	k: 409992	n:490000
SFMBT2   490000 perm   231 sec   (2125 perm/sec)   p_kst 8.367184e-01   p_cons 4.326531e-04   p_joint 3.969388e-03

Joint ci ratio: 8.807721e-02	ci left: 3.772150e-03	ci right 4.121636e-03	k: 1972	n:500000
Cons ci ratio: 2.660489e-01	ci left: 3.763162e-04	ci right 4.935993e-04	k: 216	n:500000
KS ci ratio: 2.447865e-03	ci left: 8.358128e-01	ci right 8.378633e-01	k: 418420	n:500000
SFMBT2   500000 perm   237 sec   (2107 perm/sec)   p_kst 8.368400e-01   p_cons 4.320000e-04   p_joint 3.944000e-03

Joint ci ratio: 8.821539e-02	ci left: 3.686674e-03	ci right 4.028804e-03	k: 1966	n:510000
Cons ci ratio: 2.630356e-01	ci left: 3.780913e-04	ci right 4.943734e-04	k: 221	n:510000
KS ci ratio: 2.424590e-03	ci left: 8.357278e-01	ci right 8.377585e-01	k: 426740	n:510000
SFMBT2   510000 perm   244 sec   (2087 perm/sec)   p_kst 8.367451e-01   p_cons 4.333333e-04   p_joint 3.854902e-03

Joint ci ratio: 8.750702e-02	ci left: 3.675962e-03	ci right 4.014219e-03	k: 1998	n:520000
Cons ci ratio: 2.612765e-01	ci left: 3.762104e-04	ci right 4.910138e-04	k: 224	n:520000
KS ci ratio: 2.401965e-03	ci left: 8.356462e-01	ci right 8.376577e-01	k: 435060	n:520000
SFMBT2   520000 perm   252 sec   (2067 perm/sec)   p_kst 8.366538e-01   p_cons 4.307692e-04   p_joint 3.842308e-03

Joint ci ratio: 8.764233e-02	ci left: 3.595525e-03	ci right 3.926917e-03	k: 1992	n:530000
Cons ci ratio: 2.589847e-01	ci left: 3.761672e-04	ci right 4.897875e-04	k: 228	n:530000
KS ci ratio: 2.378746e-03	ci left: 8.357077e-01	ci right 8.376999e-01	k: 443454	n:530000
SFMBT2   530000 perm   259 sec   (2048 perm/sec)   p_kst 8.367057e-01   p_cons 4.301887e-04   p_joint 3.758491e-03

Joint ci ratio: 7.909715e-02	ci left: 4.348635e-03	ci right 4.708565e-03	k: 2444	n:540000
Cons ci ratio: 2.567521e-01	ci left: 3.761298e-04	ci right 4.886025e-04	k: 232	n:540000
KS ci ratio: 2.356172e-03	ci left: 8.357689e-01	ci right 8.377423e-01	k: 451849	n:540000
SFMBT2   540000 perm   266 sec   (2030 perm/sec)   p_kst 8.367574e-01   p_cons 4.296296e-04   p_joint 4.525926e-03

Joint ci ratio: 7.861741e-02	ci left: 4.323036e-03	ci right 4.678578e-03	k: 2474	n:550000
Cons ci ratio: 2.529795e-01	ci left: 3.812056e-04	ci right 4.932572e-04	k: 239	n:550000
KS ci ratio: 2.335299e-03	ci left: 8.357022e-01	ci right 8.376579e-01	k: 460175	n:550000
SFMBT2   550000 perm   273 sec   (2012 perm/sec)   p_kst 8.366818e-01   p_cons 4.345455e-04   p_joint 4.498182e-03

Joint ci ratio: 7.939765e-02	ci left: 4.161805e-03	ci right 4.507640e-03	k: 2426	n:560000
Cons ci ratio: 2.493684e-01	ci left: 3.861117e-04	ci right 4.977340e-04	k: 246	n:560000
KS ci ratio: 2.313928e-03	ci left: 8.357615e-01	ci right 8.376993e-01	k: 468570	n:560000
SFMBT2   560000 perm   281 sec   (1994 perm/sec)   p_kst 8.367321e-01   p_cons 4.392857e-04   p_joint 4.332143e-03

Joint ci ratio: 7.948295e-02	ci left: 4.080186e-03	ci right 4.419620e-03	k: 2421	n:570000
Cons ci ratio: 2.468820e-01	ci left: 3.875644e-04	ci right 4.983180e-04	k: 251	n:570000
KS ci ratio: 2.292574e-03	ci left: 8.358855e-01	ci right 8.378058e-01	k: 477003	n:570000
SFMBT2   570000 perm   288 sec   (1977 perm/sec)   p_kst 8.368474e-01   p_cons 4.403509e-04   p_joint 4.247368e-03

Joint ci ratio: 7.966775e-02	ci left: 3.991243e-03	ci right 4.324085e-03	k: 2410	n:580000
Cons ci ratio: 2.459086e-01	ci left: 3.841175e-04	ci right 4.933872e-04	k: 253	n:580000
KS ci ratio: 2.273032e-03	ci left: 8.358568e-01	ci right 8.377606e-01	k: 485350	n:580000
SFMBT2   580000 perm   296 sec   (1960 perm/sec)   p_kst 8.368103e-01   p_cons 4.362069e-04   p_joint 4.155172e-03

Joint ci ratio: 7.891816e-02	ci left: 4.000016e-03	ci right 4.330306e-03	k: 2456	n:590000
Cons ci ratio: 2.439950e-01	ci left: 3.839706e-04	ci right 4.922197e-04	k: 257	n:590000
KS ci ratio: 2.253576e-03	ci left: 8.358783e-01	ci right 8.377658e-01	k: 493726	n:590000
SFMBT2   590000 perm   304 sec   (1943 perm/sec)   p_kst 8.368237e-01   p_cons 4.355932e-04   p_joint 4.162712e-03

Joint ci ratio: 7.420136e-02	ci left: 4.458153e-03	ci right 4.803324e-03	k: 2777	n:600000
Cons ci ratio: 2.412060e-01	ci left: 3.869633e-04	ci right 4.946227e-04	k: 263	n:600000
KS ci ratio: 2.234762e-03	ci left: 8.358808e-01	ci right 8.377526e-01	k: 502091	n:600000
SFMBT2   600000 perm   311 sec   (1926 perm/sec)   p_kst 8.368183e-01   p_cons 4.383333e-04   p_joint 4.628333e-03

Joint ci ratio: 7.451470e-02	ci left: 4.348056e-03	ci right 4.686185e-03	k: 2754	n:610000
Cons ci ratio: 2.402980e-01	ci left: 3.837005e-04	ci right 4.899903e-04	k: 265	n:610000
KS ci ratio: 2.216504e-03	ci left: 8.358719e-01	ci right 8.377282e-01	k: 510449	n:610000
SFMBT2   610000 perm   319 sec   (1910 perm/sec)   p_kst 8.368016e-01   p_cons 4.344262e-04   p_joint 4.514754e-03

Joint ci ratio: 7.367599e-02	ci left: 4.377658e-03	ci right 4.714094e-03	k: 2817	n:620000
Cons ci ratio: 2.389546e-01	ci left: 3.820599e-04	ci right 4.872160e-04	k: 268	n:620000
KS ci ratio: 2.211461e-03	ci left: 8.342709e-01	ci right 8.361195e-01	k: 517822	n:620000
SFMBT2   620000 perm   327 sec   (1894 perm/sec)   p_kst 8.351968e-01   p_cons 4.322581e-04   p_joint 4.543548e-03

Joint ci ratio: 7.319752e-02	ci left: 4.365822e-03	ci right 4.699076e-03	k: 2854	n:630000
Cons ci ratio: 2.380716e-01	ci left: 3.789803e-04	ci right 4.828465e-04	k: 270	n:630000
KS ci ratio: 2.193814e-03	ci left: 8.342815e-01	ci right 8.361154e-01	k: 526176	n:630000
SFMBT2   630000 perm   336 sec   (1878 perm/sec)   p_kst 8.352000e-01   p_cons 4.285714e-04   p_joint 4.530159e-03

Joint ci ratio: 7.397184e-02	ci left: 4.207102e-03	ci right 4.531784e-03	k: 2795	n:640000
Cons ci ratio: 2.376342e-01	ci left: 3.745280e-04	ci right 4.769576e-04	k: 271	n:640000
KS ci ratio: 2.176335e-03	ci left: 8.343232e-01	ci right 8.361425e-01	k: 534550	n:640000
SFMBT2   640000 perm   344 sec   (1862 perm/sec)   p_kst 8.352344e-01   p_cons 4.234375e-04   p_joint 4.367188e-03

Joint ci ratio: 7.416104e-02	ci left: 4.121232e-03	ci right 4.440135e-03	k: 2781	n:650000
Cons ci ratio: 2.359060e-01	ci left: 3.745549e-04	ci right 4.761380e-04	k: 275	n:650000
KS ci ratio: 2.159389e-03	ci left: 8.343482e-01	ci right 8.361534e-01	k: 542914	n:650000
SFMBT2   650000 perm   352 sec   (1847 perm/sec)   p_kst 8.352523e-01   p_cons 4.230769e-04   p_joint 4.278462e-03

Joint ci ratio: 7.352913e-02	ci left: 4.130174e-03	ci right 4.446929e-03	k: 2829	n:660000
Cons ci ratio: 2.329697e-01	ci left: 3.788631e-04	ci right 4.801515e-04	k: 282	n:660000
KS ci ratio: 2.143068e-03	ci left: 8.343422e-01	ci right 8.361336e-01	k: 551258	n:660000
SFMBT2   660000 perm   360 sec   (1832 perm/sec)   p_kst 8.352394e-01   p_cons 4.272727e-04   p_joint 4.286364e-03

Joint ci ratio: 6.810125e-02	ci left: 4.753269e-03	ci right 5.089840e-03	k: 3296	n:670000
Cons ci ratio: 2.297444e-01	ci left: 3.844568e-04	ci right 4.856160e-04	k: 290	n:670000
KS ci ratio: 2.126985e-03	ci left: 8.343528e-01	ci right 8.361308e-01	k: 559613	n:670000
SFMBT2   670000 perm   369 sec   (1817 perm/sec)   p_kst 8.352433e-01   p_cons 4.328358e-04   p_joint 4.919403e-03

Joint ci ratio: 6.831224e-02	ci left: 4.654450e-03	ci right 4.985085e-03	k: 3276	n:680000
Cons ci ratio: 2.285694e-01	ci left: 3.829615e-04	ci right 4.831393e-04	k: 293	n:680000
KS ci ratio: 2.110739e-03	ci left: 8.344310e-01	ci right 8.361956e-01	k: 568014	n:680000
SFMBT2   680000 perm   377 sec   (1802 perm/sec)   p_kst 8.353147e-01   p_cons 4.308824e-04   p_joint 4.817647e-03

Joint ci ratio: 6.786867e-02	ci left: 4.648251e-03	ci right 4.976217e-03	k: 3319	n:690000
Cons ci ratio: 2.266502e-01	ci left: 3.842446e-04	ci right 4.837960e-04	k: 298	n:690000
KS ci ratio: 2.095699e-03	ci left: 8.343966e-01	ci right 8.361485e-01	k: 576339	n:690000
SFMBT2   690000 perm   386 sec   (1788 perm/sec)   p_kst 8.352739e-01   p_cons 4.318841e-04   p_joint 4.810145e-03

Joint ci ratio: 7.037468e-02	ci left: 4.257519e-03	ci right 4.569461e-03	k: 3088	n:700000
Cons ci ratio: 2.244095e-01	ci left: 3.868427e-04	ci right 4.859394e-04	k: 304	n:700000
KS ci ratio: 2.080608e-03	ci left: 8.344118e-01	ci right 8.361511e-01	k: 584698	n:700000
SFMBT2   700000 perm   395 sec   (1773 perm/sec)   p_kst 8.352829e-01   p_cons 4.342857e-04   p_joint 4.411429e-03

Joint ci ratio: 7.044563e-02	ci left: 4.189247e-03	ci right 4.496509e-03	k: 3082	n:710000
Cons ci ratio: 2.229523e-01	ci left: 3.867124e-04	ci right 4.850442e-04	k: 308	n:710000
KS ci ratio: 2.066526e-03	ci left: 8.343350e-01	ci right 8.360623e-01	k: 592992	n:710000
SFMBT2   710000 perm   404 sec   (1759 perm/sec)   p_kst 8.352000e-01   p_cons 4.338028e-04   p_joint 4.340845e-03

Joint ci ratio: 6.728756e-02	ci left: 4.533759e-03	ci right 4.850801e-03	k: 3377	n:720000
Cons ci ratio: 2.211700e-01	ci left: 3.878996e-04	ci right 4.856375e-04	k: 313	n:720000
KS ci ratio: 2.051628e-03	ci left: 8.344078e-01	ci right 8.361228e-01	k: 601392	n:720000
SFMBT2   720000 perm   412 sec   (1746 perm/sec)   p_kst 8.352667e-01   p_cons 4.347222e-04   p_joint 4.690278e-03

Joint ci ratio: 7.072683e-02	ci left: 4.042166e-03	ci right 4.339872e-03	k: 3058	n:730000
Cons ci ratio: 2.180662e-01	ci left: 3.942367e-04	ci right 4.919906e-04	k: 322	n:730000
KS ci ratio: 2.108924e-03	ci left: 8.246960e-01	ci right 8.264384e-01	k: 602665	n:730000
SFMBT2   730000 perm   422 sec   (1732 perm/sec)   p_kst 8.255685e-01   p_cons 4.410959e-04   p_joint 4.189041e-03

Joint ci ratio: 7.123333e-02	ci left: 3.930457e-03	ci right 4.222095e-03	k: 3015	n:740000
Cons ci ratio: 2.173946e-01	ci left: 3.914644e-04	ci right 4.881920e-04	k: 324	n:740000
KS ci ratio: 2.094456e-03	ci left: 8.247254e-01	ci right 8.264559e-01	k: 610938	n:740000
SFMBT2   740000 perm   431 sec   (1718 perm/sec)   p_kst 8.255919e-01   p_cons 4.378378e-04   p_joint 4.074324e-03

Joint ci ratio: 7.078891e-02	ci left: 3.927818e-03	ci right 4.217366e-03	k: 3053	n:750000
Cons ci ratio: 2.160690e-01	ci left: 3.912887e-04	ci right 4.873052e-04	k: 328	n:750000
KS ci ratio: 2.080783e-03	ci left: 8.246845e-01	ci right 8.264036e-01	k: 619159	n:750000
SFMBT2   750000 perm   440 sec   (1705 perm/sec)   p_kst 8.255453e-01   p_cons 4.373333e-04   p_joint 4.070667e-03

Joint ci ratio: 7.032987e-02	ci left: 3.927839e-03	ci right 4.215435e-03	k: 3093	n:760000
Cons ci ratio: 2.134885e-01	ci left: 3.961004e-04	ci right 4.919848e-04	k: 336	n:760000
KS ci ratio: 2.066986e-03	ci left: 8.246989e-01	ci right 8.264066e-01	k: 627421	n:760000
SFMBT2   760000 perm   449 sec   (1692 perm/sec)   p_kst 8.255539e-01   p_cons 4.421053e-04   p_joint 4.069737e-03

Joint ci ratio: 7.097959e-02	ci left: 3.805377e-03	ci right 4.086686e-03	k: 3037	n:770000
Cons ci ratio: 2.119221e-01	ci left: 3.971039e-04	ci right 4.924342e-04	k: 341	n:770000
KS ci ratio: 2.053405e-03	ci left: 8.247207e-01	ci right 8.264172e-01	k: 635689	n:770000
SFMBT2   770000 perm   459 sec   (1679 perm/sec)   p_kst 8.255701e-01   p_cons 4.428571e-04   p_joint 3.944156e-03

Joint ci ratio: 7.050535e-02	ci left: 3.808225e-03	ci right 4.087787e-03	k: 3078	n:780000
Cons ci ratio: 2.097857e-01	ci left: 4.005134e-04	ci right 4.955684e-04	k: 348	n:780000
KS ci ratio: 2.039897e-03	ci left: 8.247689e-01	ci right 8.264543e-01	k: 643978	n:780000
SFMBT2   780000 perm   468 sec   (1666 perm/sec)   p_kst 8.256128e-01   p_cons 4.461538e-04   p_joint 3.946154e-03

Joint ci ratio: 7.008561e-02	ci left: 3.806032e-03	ci right 4.083701e-03	k: 3115	n:790000
Cons ci ratio: 2.085938e-01	ci left: 4.002417e-04	ci right 4.946236e-04	k: 352	n:790000
KS ci ratio: 2.026732e-03	ci left: 8.248045e-01	ci right 8.264791e-01	k: 652258	n:790000
SFMBT2   790000 perm   478 sec   (1654 perm/sec)   p_kst 8.256430e-01   p_cons 4.455696e-04   p_joint 3.943038e-03

Joint ci ratio: 6.966220e-02	ci left: 3.805126e-03	ci right 4.080985e-03	k: 3153	n:800000
Cons ci ratio: 2.077132e-01	ci left: 3.987931e-04	ci right 4.923860e-04	k: 355	n:800000
KS ci ratio: 2.014327e-03	ci left: 8.247667e-01	ci right 8.264309e-01	k: 660480	n:800000
SFMBT2   800000 perm   487 sec   (1642 perm/sec)   p_kst 8.256000e-01   p_cons 4.437500e-04   p_joint 3.941250e-03

Joint ci ratio: 6.629772e-02	ci left: 4.155019e-03	ci right 4.441137e-03	k: 3480	n:810000
Cons ci ratio: 2.062697e-01	ci left: 3.997227e-04	ci right 4.927995e-04	k: 360	n:810000
KS ci ratio: 2.002369e-03	ci left: 8.246977e-01	ci right 8.263519e-01	k: 668676	n:810000
SFMBT2   810000 perm   497 sec   (1630 perm/sec)   p_kst 8.255259e-01   p_cons 4.444444e-04   p_joint 4.296296e-03

Joint ci ratio: 6.410763e-02	ci left: 4.393477e-03	ci right 4.685650e-03	k: 3721	n:820000
Cons ci ratio: 2.051364e-01	ci left: 3.994748e-04	ci right 4.919187e-04	k: 364	n:820000
KS ci ratio: 1.989694e-03	ci left: 8.247647e-01	ci right 8.264086e-01	k: 676982	n:820000
SFMBT2   820000 perm   507 sec   (1618 perm/sec)   p_kst 8.255878e-01   p_cons 4.439024e-04   p_joint 4.537805e-03

Joint ci ratio: 6.367267e-02	ci left: 4.401008e-03	ci right 4.691623e-03	k: 3772	n:830000
Cons ci ratio: 2.042987e-01	ci left: 3.980910e-04	ci right 4.897915e-04	k: 367	n:830000
KS ci ratio: 1.977687e-03	ci left: 8.247674e-01	ci right 8.264014e-01	k: 685236	n:830000
SFMBT2   830000 perm   517 sec   (1606 perm/sec)   p_kst 8.255855e-01   p_cons 4.421687e-04   p_joint 4.544578e-03

Joint ci ratio: 6.423257e-02	ci left: 4.272462e-03	ci right 4.557162e-03	k: 3707	n:840000
Cons ci ratio: 2.026531e-01	ci left: 4.001308e-04	ci right 4.914669e-04	k: 373	n:840000
KS ci ratio: 1.966350e-03	ci left: 8.247033e-01	ci right 8.263278e-01	k: 693434	n:840000
SFMBT2   840000 perm   527 sec   (1595 perm/sec)   p_kst 8.255167e-01   p_cons 4.440476e-04   p_joint 4.413095e-03

Joint ci ratio: 6.391475e-02	ci left: 4.265029e-03	ci right 4.547776e-03	k: 3744	n:850000
Cons ci ratio: 2.023832e-01	ci left: 3.965401e-04	ci right 4.869211e-04	k: 374	n:850000
KS ci ratio: 1.954822e-03	ci left: 8.246973e-01	ci right 8.263122e-01	k: 701680	n:850000
SFMBT2   850000 perm   537 sec   (1583 perm/sec)   p_kst 8.255059e-01   p_cons 4.400000e-04   p_joint 4.404706e-03

Joint ci ratio: 6.360159e-02	ci left: 4.257773e-03	ci right 4.538605e-03	k: 3781	n:860000
Cons ci ratio: 2.013124e-01	ci left: 3.963453e-04	ci right 4.861451e-04	k: 378	n:860000
KS ci ratio: 1.942914e-03	ci left: 8.247777e-01	ci right 8.263829e-01	k: 710000	n:860000
SFMBT2   860000 perm   547 sec   (1572 perm/sec)   p_kst 8.255814e-01   p_cons 4.395349e-04   p_joint 4.396512e-03

Joint ci ratio: 6.379834e-02	ci left: 4.182812e-03	ci right 4.459584e-03	k: 3758	n:870000
Cons ci ratio: 2.002584e-01	ci left: 3.961561e-04	ci right 4.853858e-04	k: 382	n:870000
KS ci ratio: 1.931175e-03	ci left: 8.248632e-01	ci right 8.264588e-01	k: 718326	n:870000
SFMBT2   870000 perm   558 sec   (1560 perm/sec)   p_kst 8.256621e-01   p_cons 4.390805e-04   p_joint 4.319540e-03

Joint ci ratio: 6.338634e-02	ci left: 4.190077e-03	ci right 4.465474e-03	k: 3807	n:880000
Cons ci ratio: 1.994789e-01	ci left: 3.948928e-04	ci right 4.834496e-04	k: 385	n:880000
KS ci ratio: 1.920047e-03	ci left: 8.248864e-01	ci right 8.264728e-01	k: 726599	n:880000
SFMBT2   880000 perm   568 sec   (1550 perm/sec)   p_kst 8.256807e-01   p_cons 4.375000e-04   p_joint 4.326136e-03

Joint ci ratio: 6.208329e-02	ci left: 4.321068e-03	ci right 4.599026e-03	k: 3968	n:890000
Cons ci ratio: 1.984533e-01	ci left: 3.947263e-04	ci right 4.827356e-04	k: 389	n:890000
KS ci ratio: 1.909191e-03	ci left: 8.248967e-01	ci right 8.264742e-01	k: 734861	n:890000
SFMBT2   890000 perm   578 sec   (1539 perm/sec)   p_kst 8.256865e-01   p_cons 4.370787e-04   p_joint 4.458427e-03

Joint ci ratio: 6.203775e-02	ci left: 4.279617e-03	ci right 4.554699e-03	k: 3974	n:900000
Cons ci ratio: 1.974434e-01	ci left: 3.945646e-04	ci right 4.820363e-04	k: 393	n:900000
KS ci ratio: 1.898304e-03	ci left: 8.249391e-01	ci right 8.265077e-01	k: 743152	n:900000
SFMBT2   900000 perm   589 sec   (1529 perm/sec)   p_kst 8.257244e-01   p_cons 4.366667e-04   p_joint 4.415556e-03

Joint ci ratio: 6.168952e-02	ci left: 4.281273e-03	ci right 4.554863e-03	k: 4019	n:910000
Cons ci ratio: 1.962023e-01	ci left: 3.954525e-04	ci right 4.825041e-04	k: 398	n:910000
KS ci ratio: 1.887566e-03	ci left: 8.249861e-01	ci right 8.265459e-01	k: 751448	n:910000
SFMBT2   910000 perm   599 sec   (1519 perm/sec)   p_kst 8.257670e-01   p_cons 4.373626e-04   p_joint 4.416484e-03

Joint ci ratio: 6.139262e-02	ci left: 4.276477e-03	ci right 4.548397e-03	k: 4058	n:920000
Cons ci ratio: 1.952262e-01	ci left: 3.952889e-04	ci right 4.818201e-04	k: 402	n:920000
KS ci ratio: 1.877008e-03	ci left: 8.250321e-01	ci right 8.265832e-01	k: 759744	n:920000
SFMBT2   920000 perm   610 sec   (1509 perm/sec)   p_kst 8.258087e-01   p_cons 4.369565e-04   p_joint 4.410870e-03

Joint ci ratio: 6.103268e-02	ci left: 4.281316e-03	ci right 4.551892e-03	k: 4106	n:930000
Cons ci ratio: 1.940262e-01	ci left: 3.961529e-04	ci right 4.822772e-04	k: 407	n:930000
KS ci ratio: 1.866889e-03	ci left: 8.250362e-01	ci right 8.265790e-01	k: 768002	n:930000
SFMBT2   930000 perm   620 sec   (1499 perm/sec)   p_kst 8.258086e-01   p_cons 4.376344e-04   p_joint 4.415054e-03

Joint ci ratio: 6.116138e-02	ci left: 4.217957e-03	ci right 4.485111e-03	k: 4089	n:940000
Cons ci ratio: 1.923826e-01	ci left: 3.990251e-04	ci right 4.849531e-04	k: 414	n:940000
KS ci ratio: 1.857084e-03	ci left: 8.250168e-01	ci right 8.265514e-01	k: 776238	n:940000
SFMBT2   940000 perm   631 sec   (1489 perm/sec)   p_kst 8.257851e-01   p_cons 4.404255e-04   p_joint 4.350000e-03

Joint ci ratio: 6.076125e-02	ci left: 4.229534e-03	ci right 4.495607e-03	k: 4143	n:950000
Cons ci ratio: 1.914622e-01	ci left: 3.988331e-04	ci right 4.842609e-04	k: 418	n:950000
KS ci ratio: 1.847594e-03	ci left: 8.249725e-01	ci right 8.264992e-01	k: 784450	n:950000
SFMBT2   950000 perm   642 sec   (1479 perm/sec)   p_kst 8.257368e-01   p_cons 4.400000e-04   p_joint 4.361053e-03

Joint ci ratio: 6.053565e-02	ci left: 4.217278e-03	ci right 4.481560e-03	k: 4174	n:960000
Cons ci ratio: 1.914626e-01	ci left: 3.946785e-04	ci right 4.792166e-04	k: 418	n:960000
KS ci ratio: 1.838062e-03	ci left: 8.249584e-01	ci right 8.264771e-01	k: 792690	n:960000
SFMBT2   960000 perm   653 sec   (1470 perm/sec)   p_kst 8.257187e-01   p_cons 4.354167e-04   p_joint 4.347917e-03

Joint ci ratio: 6.036301e-02	ci left: 4.198168e-03	ci right 4.460476e-03	k: 4198	n:970000
Cons ci ratio: 1.901062e-01	ci left: 3.964998e-04	ci right 4.807569e-04	k: 424	n:970000
KS ci ratio: 1.829029e-03	ci left: 8.248888e-01	ci right 8.264000e-01	k: 800876	n:970000
SFMBT2   970000 perm   664 sec   (1460 perm/sec)   p_kst 8.256454e-01   p_cons 4.371134e-04   p_joint 4.327835e-03

Joint ci ratio: 6.071385e-02	ci left: 4.107085e-03	ci right 4.365246e-03	k: 4150	n:980000
Cons ci ratio: 1.896607e-01	ci left: 3.943977e-04	ci right 4.779890e-04	k: 426	n:980000
KS ci ratio: 1.819121e-03	ci left: 8.249801e-01	ci right 8.264832e-01	k: 809218	n:980000
SFMBT2   980000 perm   676 sec   (1451 perm/sec)   p_kst 8.257327e-01   p_cons 4.346939e-04   p_joint 4.234694e-03

Joint ci ratio: 6.043797e-02	ci left: 4.103402e-03	ci right 4.360118e-03	k: 4188	n:990000
Cons ci ratio: 1.885598e-01	ci left: 3.952253e-04	ci right 4.784501e-04	k: 431	n:990000
KS ci ratio: 1.810014e-03	ci left: 8.249674e-01	ci right 8.264630e-01	k: 817459	n:990000
SFMBT2   990000 perm   687 sec   (1441 perm/sec)   p_kst 8.257162e-01   p_cons 4.353535e-04   p_joint 4.230303e-03

Joint ci ratio: 6.041030e-02	ci left: 4.066305e-03	ci right 4.320580e-03	k: 4192	n:1000000
Cons ci ratio: 1.872637e-01	ci left: 3.969908e-04	ci right 4.799475e-04	k: 437	n:1000000
KS ci ratio: 1.800629e-03	ci left: 8.250211e-01	ci right 8.265090e-01	k: 825766	n:1000000
SFMBT2   1000000 perm   698 sec   (1432 perm/sec)   p_kst 8.257660e-01   p_cons 4.370000e-04   p_joint 4.192000e-03

Joint ci ratio: 6.011000e-02	ci left: 4.067002e-03	ci right 4.320013e-03	k: 4234	n:1010000
Cons ci ratio: 1.866258e-01	ci left: 3.958915e-04	ci right 4.783047e-04	k: 440	n:1010000
KS ci ratio: 1.792006e-03	ci left: 8.249746e-01	ci right 8.264552e-01	k: 833973	n:1010000
SFMBT2   1010000 perm   710 sec   (1423 perm/sec)   p_kst 8.257158e-01   p_cons 4.356436e-04   p_joint 4.192079e-03

Joint ci ratio: 6.024710e-02	ci left: 4.008779e-03	ci right 4.258756e-03	k: 4215	n:1020000
Cons ci ratio: 1.862043e-01	ci left: 3.938794e-04	ci right 4.756677e-04	k: 442	n:1020000
KS ci ratio: 1.783601e-03	ci left: 8.249133e-01	ci right 8.263868e-01	k: 842164	n:1020000
SFMBT2   1020000 perm   721 sec   (1414 perm/sec)   p_kst 8.256510e-01   p_cons 4.333333e-04   p_joint 4.132353e-03

Joint ci ratio: 6.026267e-02	ci left: 3.967944e-03	ci right 4.215440e-03	k: 4213	n:1030000
Cons ci ratio: 1.853693e-01	ci left: 3.937582e-04	ci right 4.751135e-04	k: 446	n:1030000
KS ci ratio: 1.775356e-03	ci left: 8.248463e-01	ci right 8.263130e-01	k: 850348	n:1030000
SFMBT2   1030000 perm   733 sec   (1406 perm/sec)   p_kst 8.255806e-01   p_cons 4.330097e-04   p_joint 4.090291e-03

Joint ci ratio: 5.993628e-02	ci left: 3.973357e-03	ci right 4.219802e-03	k: 4259	n:1040000
Cons ci ratio: 1.845455e-01	ci left: 3.936402e-04	ci right 4.745691e-04	k: 450	n:1040000
KS ci ratio: 1.766876e-03	ci left: 8.248376e-01	ci right 8.262972e-01	k: 858591	n:1040000
SFMBT2   1040000 perm   745 sec   (1397 perm/sec)   p_kst 8.255683e-01   p_cons 4.326923e-04   p_joint 4.095192e-03

Joint ci ratio: 5.971967e-02	ci left: 3.964597e-03	ci right 4.209580e-03	k: 4290	n:1050000
Cons ci ratio: 1.839349e-01	ci left: 3.926166e-04	ci right 4.730382e-04	k: 453	n:1050000
KS ci ratio: 1.758329e-03	ci left: 8.248595e-01	ci right 8.263121e-01	k: 866866	n:1050000
SFMBT2   1050000 perm   756 sec   (1388 perm/sec)   p_kst 8.255867e-01   p_cons 4.314286e-04   p_joint 4.085714e-03

Joint ci ratio: 5.960239e-02	ci left: 3.942992e-03	ci right 4.186145e-03	k: 4307	n:1060000
Cons ci ratio: 1.833302e-01	ci left: 3.916127e-04	ci right 4.715357e-04	k: 456	n:1060000
KS ci ratio: 1.749963e-03	ci left: 8.248716e-01	ci right 8.263172e-01	k: 875131	n:1060000
SFMBT2   1060000 perm   768 sec   (1380 perm/sec)   p_kst 8.255953e-01   p_cons 4.301887e-04   p_joint 4.063208e-03

Joint ci ratio: 5.960353e-02	ci left: 3.906140e-03	ci right 4.147025e-03	k: 4307	n:1070000
Cons ci ratio: 1.827316e-01	ci left: 3.906281e-04	ci right 4.700609e-04	k: 459	n:1070000
KS ci ratio: 1.741529e-03	ci left: 8.249143e-01	ci right 8.263531e-01	k: 883429	n:1070000
SFMBT2   1070000 perm   780 sec   (1371 perm/sec)   p_kst 8.256346e-01   p_cons 4.289720e-04   p_joint 4.025234e-03

Joint ci ratio: 7.044099e-02	ci left: 2.758519e-03	ci right 2.960828e-03	k: 3087	n:1080000
Cons ci ratio: 2.029348e-01	ci left: 3.103324e-04	ci right 3.812812e-04	k: 372	n:1080000
KS ci ratio: 1.733104e-03	ci left: 8.249748e-01	ci right 8.264067e-01	k: 891747	n:1080000
SFMBT2   1080000 perm   793 sec   (1363 perm/sec)   p_kst 8.256917e-01   p_cons 3.444444e-04   p_joint 2.858333e-03

Joint ci ratio: 7.014639e-02	ci left: 2.756646e-03	ci right 2.957937e-03	k: 3113	n:1090000
Cons ci ratio: 2.013218e-01	ci left: 3.127114e-04	ci right 3.835659e-04	k: 378	n:1090000
KS ci ratio: 1.725284e-03	ci left: 8.249534e-01	ci right 8.263788e-01	k: 899977	n:1090000
SFMBT2   1090000 perm   805 sec   (1354 perm/sec)   p_kst 8.256670e-01   p_cons 3.467890e-04   p_joint 2.855963e-03

Joint ci ratio: 7.092818e-02	ci left: 2.670853e-03	ci right 2.868143e-03	k: 3045	n:1100000
Cons ci ratio: 2.010569e-01	ci left: 3.107318e-04	ci right 3.810339e-04	k: 379	n:1100000
KS ci ratio: 1.717183e-03	ci left: 8.249970e-01	ci right 8.264158e-01	k: 908278	n:1100000
SFMBT2   1100000 perm   817 sec   (1346 perm/sec)   p_kst 8.257073e-01   p_cons 3.445455e-04   p_joint 2.768182e-03

Joint ci ratio: 7.052392e-02	ci left: 2.677766e-03	ci right 2.874393e-03	k: 3080	n:1110000
Cons ci ratio: 1.997470e-01	ci left: 3.122109e-04	ci right 3.823313e-04	k: 384	n:1110000
KS ci ratio: 1.709254e-03	ci left: 8.250300e-01	ci right 8.264422e-01	k: 916568	n:1110000
SFMBT2   1110000 perm   830 sec   (1338 perm/sec)   p_kst 8.257369e-01   p_cons 3.459459e-04   p_joint 2.774775e-03

Joint ci ratio: 7.016038e-02	ci left: 2.681926e-03	ci right 2.877802e-03	k: 3112	n:1120000
Cons ci ratio: 1.984623e-01	ci left: 3.136651e-04	ci right 3.836042e-04	k: 389	n:1120000
KS ci ratio: 1.701551e-03	ci left: 8.250426e-01	ci right 8.264485e-01	k: 924836	n:1120000
SFMBT2   1120000 perm   842 sec   (1330 perm/sec)   p_kst 8.257464e-01   p_cons 3.473214e-04   p_joint 2.778571e-03

Joint ci ratio: 7.051419e-02	ci left: 2.631239e-03	ci right 2.824422e-03	k: 3081	n:1130000
Cons ci ratio: 1.979555e-01	ci left: 3.125714e-04	ci right 3.820671e-04	k: 391	n:1130000
KS ci ratio: 1.694049e-03	ci left: 8.250383e-01	ci right 8.264380e-01	k: 933085	n:1130000
SFMBT2   1130000 perm   855 sec   (1322 perm/sec)   p_kst 8.257389e-01   p_cons 3.460177e-04   p_joint 2.726549e-03

Joint ci ratio: 7.010566e-02	ci left: 2.639182e-03	ci right 2.831780e-03	k: 3117	n:1140000
Cons ci ratio: 1.964575e-01	ci left: 3.148328e-04	ci right 3.842383e-04	k: 397	n:1140000
KS ci ratio: 1.686568e-03	ci left: 8.250471e-01	ci right 8.264407e-01	k: 941349	n:1140000
SFMBT2   1140000 perm   868 sec   (1314 perm/sec)   p_kst 8.257447e-01   p_cons 3.482456e-04   p_joint 2.734211e-03

Joint ci ratio: 6.989329e-02	ci left: 2.632465e-03	ci right 2.823967e-03	k: 3136	n:1150000
Cons ci ratio: 1.962113e-01	ci left: 3.129220e-04	ci right 3.818094e-04	k: 398	n:1150000
KS ci ratio: 1.679491e-03	ci left: 8.250036e-01	ci right 8.263912e-01	k: 949553	n:1150000
SFMBT2   1150000 perm   881 sec   (1306 perm/sec)   p_kst 8.256983e-01   p_cons 3.460870e-04   p_joint 2.726957e-03

Joint ci ratio: 6.983833e-02	ci left: 2.614005e-03	ci right 2.804009e-03	k: 3141	n:1160000
Cons ci ratio: 1.949932e-01	ci left: 3.143236e-04	ci right 3.830391e-04	k: 403	n:1160000
KS ci ratio: 1.672451e-03	ci left: 8.249695e-01	ci right 8.263513e-01	k: 957767	n:1160000
SFMBT2   1160000 perm   893 sec   (1298 perm/sec)   p_kst 8.256612e-01   p_cons 3.474138e-04   p_joint 2.707759e-03

Joint ci ratio: 6.950720e-02	ci left: 2.616858e-03	ci right 2.806130e-03	k: 3171	n:1170000
Cons ci ratio: 1.945125e-01	ci left: 3.132631e-04	ci right 3.815579e-04	k: 405	n:1170000
KS ci ratio: 1.665257e-03	ci left: 8.249780e-01	ci right 8.263537e-01	k: 966030	n:1170000
SFMBT2   1170000 perm   906 sec   (1291 perm/sec)   p_kst 8.256667e-01   p_cons 3.461538e-04   p_joint 2.710256e-03

Joint ci ratio: 6.920241e-02	ci left: 2.617998e-03	ci right 2.806490e-03	k: 3199	n:1180000
Cons ci ratio: 1.935613e-01	ci left: 3.138335e-04	ci right 3.818786e-04	k: 409	n:1180000
KS ci ratio: 1.658521e-03	ci left: 8.249226e-01	ci right 8.262927e-01	k: 974218	n:1180000
SFMBT2   1180000 perm   920 sec   (1283 perm/sec)   p_kst 8.256085e-01   p_cons 3.466102e-04   p_joint 2.711017e-03

Joint ci ratio: 6.919236e-02	ci left: 2.596823e-03	ci right 2.783762e-03	k: 3200	n:1190000
Cons ci ratio: 1.930910e-01	ci left: 3.127956e-04	ci right 3.804315e-04	k: 411	n:1190000
KS ci ratio: 1.651355e-03	ci left: 8.249574e-01	ci right 8.263217e-01	k: 982512	n:1190000
SFMBT2   1190000 perm   933 sec   (1276 perm/sec)   p_kst 8.256403e-01   p_cons 3.453782e-04   p_joint 2.689076e-03

Joint ci ratio: 7.374416e-02	ci left: 2.262518e-03	ci right 2.436565e-03	k: 2818	n:1200000
Cons ci ratio: 1.928573e-01	ci left: 3.109820e-04	ci right 3.781348e-04	k: 412	n:1200000
KS ci ratio: 1.644214e-03	ci left: 8.250033e-01	ci right 8.263618e-01	k: 990820	n:1200000
SFMBT2   1200000 perm   946 sec   (1269 perm/sec)   p_kst 8.256833e-01   p_cons 3.433333e-04   p_joint 2.348333e-03

Joint ci ratio: 7.353600e-02	ci left: 2.256799e-03	ci right 2.429895e-03	k: 2834	n:1210000
Cons ci ratio: 1.914713e-01	ci left: 3.131321e-04	ci right 3.802067e-04	k: 418	n:1210000
KS ci ratio: 1.637607e-03	ci left: 8.249707e-01	ci right 8.263236e-01	k: 999034	n:1210000
SFMBT2   1210000 perm   959 sec   (1262 perm/sec)   p_kst 8.256479e-01   p_cons 3.454545e-04   p_joint 2.342149e-03

Joint ci ratio: 6.864850e-02	ci left: 2.574049e-03	ci right 2.757833e-03	k: 3251	n:1220000
Cons ci ratio: 1.910161e-01	ci left: 3.121263e-04	ci right 3.788080e-04	k: 420	n:1220000
KS ci ratio: 1.631107e-03	ci left: 8.249337e-01	ci right 8.262811e-01	k: 1007242	n:1220000
SFMBT2   1220000 perm   972 sec   (1255 perm/sec)   p_kst 8.256082e-01   p_cons 3.442623e-04   p_joint 2.664754e-03

Joint ci ratio: 6.874469e-02	ci left: 2.545929e-03	ci right 2.727971e-03	k: 3242	n:1230000
Cons ci ratio: 1.907898e-01	ci left: 3.103628e-04	ci right 3.765801e-04	k: 421	n:1230000
KS ci ratio: 1.624362e-03	ci left: 8.249543e-01	ci right 8.262962e-01	k: 1015520	n:1230000
SFMBT2   1230000 perm   985 sec   (1248 perm/sec)   p_kst 8.256260e-01   p_cons 3.422764e-04   p_joint 2.635772e-03

Joint ci ratio: 6.311124e-02	ci left: 3.003707e-03	ci right 3.200239e-03	k: 3845	n:1240000
Cons ci ratio: 1.903394e-01	ci left: 3.093958e-04	ci right 3.752329e-04	k: 423	n:1240000
KS ci ratio: 1.617588e-03	ci left: 8.249948e-01	ci right 8.263311e-01	k: 1023823	n:1240000
SFMBT2   1240000 perm   999 sec   (1241 perm/sec)   p_kst 8.256637e-01   p_cons 3.411290e-04   p_joint 3.100806e-03

Joint ci ratio: 6.283404e-02	ci left: 3.006449e-03	ci right 3.202265e-03	k: 3879	n:1250000
Cons ci ratio: 1.894478e-01	ci left: 3.099685e-04	ci right 3.755830e-04	k: 427	n:1250000
KS ci ratio: 1.611156e-03	ci left: 8.249881e-01	ci right 8.263192e-01	k: 1032068	n:1250000
SFMBT2   1250000 perm   1012 sec   (1235 perm/sec)   p_kst 8.256544e-01   p_cons 3.416000e-04   p_joint 3.103200e-03

Joint ci ratio: 6.302246e-02	ci left: 2.964619e-03	ci right 3.158311e-03	k: 3856	n:1260000
Cons ci ratio: 1.890069e-01	ci left: 3.090205e-04	ci right 3.742646e-04	k: 429	n:1260000
KS ci ratio: 1.604752e-03	ci left: 8.249904e-01	ci right 8.263161e-01	k: 1040324	n:1260000
SFMBT2   1260000 perm   1026 sec   (1228 perm/sec)   p_kst 8.256540e-01   p_cons 3.404762e-04   p_joint 3.060317e-03

Joint ci ratio: 6.277880e-02	ci left: 2.964526e-03	ci right 3.157436e-03	k: 3886	n:1270000
Cons ci ratio: 1.881338e-01	ci left: 3.095882e-04	ci right 3.746158e-04	k: 433	n:1270000
KS ci ratio: 1.598215e-03	ci left: 8.250304e-01	ci right 8.263508e-01	k: 1048628	n:1270000
SFMBT2   1270000 perm   1040 sec   (1221 perm/sec)   p_kst 8.256913e-01   p_cons 3.409449e-04   p_joint 3.059843e-03

Joint ci ratio: 6.260210e-02	ci left: 2.958284e-03	ci right 3.150226e-03	k: 3908	n:1280000
Cons ci ratio: 1.879176e-01	ci left: 3.079140e-04	ci right 3.725071e-04	k: 434	n:1280000
KS ci ratio: 1.592045e-03	ci left: 8.250174e-01	ci right 8.263327e-01	k: 1056865	n:1280000
SFMBT2   1280000 perm   1054 sec   (1214 perm/sec)   p_kst 8.256758e-01   p_cons 3.390625e-04   p_joint 3.053125e-03

Joint ci ratio: 6.233153e-02	ci left: 2.961296e-03	ci right 3.152573e-03	k: 3942	n:1290000
Cons ci ratio: 1.870595e-01	ci left: 3.084823e-04	ci right 3.728656e-04	k: 438	n:1290000
KS ci ratio: 1.586011e-03	ci left: 8.249930e-01	ci right 8.263032e-01	k: 1065087	n:1290000
SFMBT2   1290000 perm   1068 sec   (1208 perm/sec)   p_kst 8.256488e-01   p_cons 3.395349e-04   p_joint 3.055814e-03

Joint ci ratio: 6.572047e-02	ci left: 2.639517e-03	ci right 2.819632e-03	k: 3547	n:1300000
Cons ci ratio: 1.864236e-01	ci left: 3.083092e-04	ci right 3.724128e-04	k: 441	n:1300000
KS ci ratio: 1.579694e-03	ci left: 8.250329e-01	ci right 8.263380e-01	k: 1073392	n:1300000
SFMBT2   1300000 perm   1082 sec   (1202 perm/sec)   p_kst 8.256862e-01   p_cons 3.392308e-04   p_joint 2.728462e-03

Joint ci ratio: 6.548101e-02	ci left: 2.638890e-03	ci right 2.818281e-03	k: 3573	n:1310000
Cons ci ratio: 1.862133e-01	ci left: 3.066834e-04	ci right 3.703689e-04	k: 442	n:1310000
KS ci ratio: 1.573557e-03	ci left: 8.250531e-01	ci right 8.263531e-01	k: 1081672	n:1310000
SFMBT2   1310000 perm   1096 sec   (1195 perm/sec)   p_kst 8.257038e-01   p_cons 3.374046e-04   p_joint 2.727481e-03

Joint ci ratio: 6.526234e-02	ci left: 2.636783e-03	ci right 2.815410e-03	k: 3597	n:1320000
Cons ci ratio: 1.857944e-01	ci left: 3.058047e-04	ci right 3.691487e-04	k: 444	n:1320000
KS ci ratio: 1.567441e-03	ci left: 8.250821e-01	ci right 8.263771e-01	k: 1089964	n:1320000
SFMBT2   1320000 perm   1111 sec   (1189 perm/sec)   p_kst 8.257303e-01   p_cons 3.363636e-04   p_joint 2.725000e-03

Joint ci ratio: 6.505484e-02	ci left: 2.633969e-03	ci right 2.811817e-03	k: 3620	n:1330000
Cons ci ratio: 1.853784e-01	ci left: 3.049393e-04	ci right 3.679468e-04	k: 446	n:1330000
KS ci ratio: 1.561428e-03	ci left: 8.251046e-01	ci right 8.263947e-01	k: 1098248	n:1330000
SFMBT2   1330000 perm   1125 sec   (1182 perm/sec)   p_kst 8.257504e-01   p_cons 3.353383e-04   p_joint 2.721805e-03

Joint ci ratio: 6.500153e-02	ci left: 2.618717e-03	ci right 2.795384e-03	k: 3626	n:1340000
Cons ci ratio: 1.849652e-01	ci left: 3.040870e-04	ci right 3.667625e-04	k: 448	n:1340000
KS ci ratio: 1.555476e-03	ci left: 8.251283e-01	ci right 8.264135e-01	k: 1106534	n:1340000
SFMBT2   1340000 perm   1140 sec   (1176 perm/sec)   p_kst 8.257716e-01   p_cons 3.343284e-04   p_joint 2.705970e-03

Joint ci ratio: 6.513738e-02	ci left: 2.588387e-03	ci right 2.763387e-03	k: 3611	n:1350000
Cons ci ratio: 1.843504e-01	ci left: 3.039540e-04	ci right 3.663706e-04	k: 451	n:1350000
KS ci ratio: 1.549871e-03	ci left: 8.250998e-01	ci right 8.263803e-01	k: 1114750	n:1350000
SFMBT2   1350000 perm   1154 sec   (1170 perm/sec)   p_kst 8.257407e-01   p_cons 3.340741e-04   p_joint 2.674815e-03

Joint ci ratio: 6.484170e-02	ci left: 2.593225e-03	ci right 2.767727e-03	k: 3644	n:1360000
Cons ci ratio: 1.839439e-01	ci left: 3.031218e-04	ci right 3.652150e-04	k: 453	n:1360000
KS ci ratio: 1.544247e-03	ci left: 8.250864e-01	ci right 8.263622e-01	k: 1122986	n:1360000
SFMBT2   1360000 perm   1169 sec   (1163 perm/sec)   p_kst 8.257250e-01   p_cons 3.330882e-04   p_joint 2.679412e-03

Joint ci ratio: 6.466469e-02	ci left: 2.588659e-03	ci right 2.762359e-03	k: 3664	n:1370000
Cons ci ratio: 1.833392e-01	ci left: 3.029983e-04	ci right 3.648396e-04	k: 456	n:1370000
KS ci ratio: 1.538855e-03	ci left: 8.250410e-01	ci right 8.263123e-01	k: 1131178	n:1370000
SFMBT2   1370000 perm   1184 sec   (1157 perm/sec)   p_kst 8.256774e-01   p_cons 3.328467e-04   p_joint 2.674453e-03

Joint ci ratio: 6.448913e-02	ci left: 2.584159e-03	ci right 2.757069e-03	k: 3684	n:1380000
Cons ci ratio: 1.827404e-01	ci left: 3.028770e-04	ci right 3.644692e-04	k: 459	n:1380000
KS ci ratio: 1.533249e-03	ci left: 8.250471e-01	ci right 8.263138e-01	k: 1139440	n:1380000
SFMBT2   1380000 perm   1199 sec   (1151 perm/sec)   p_kst 8.256812e-01   p_cons 3.326087e-04   p_joint 2.669565e-03

Joint ci ratio: 6.432370e-02	ci left: 2.579017e-03	ci right 2.751124e-03	k: 3703	n:1390000
Cons ci ratio: 1.825423e-01	ci left: 3.013845e-04	ci right 3.625994e-04	k: 460	n:1390000
KS ci ratio: 1.527399e-03	ci left: 8.251108e-01	ci right 8.263727e-01	k: 1147782	n:1390000
SFMBT2   1390000 perm   1214 sec   (1145 perm/sec)   p_kst 8.257424e-01   p_cons 3.309353e-04   p_joint 2.664029e-03

Joint ci ratio: 6.426346e-02	ci left: 2.565514e-03	ci right 2.736554e-03	k: 3710	n:1400000
Cons ci ratio: 1.811717e-01	ci left: 3.040042e-04	ci right 3.652368e-04	k: 467	n:1400000
KS ci ratio: 1.521849e-03	ci left: 8.251292e-01	ci right 8.263866e-01	k: 1156062	n:1400000
SFMBT2   1400000 perm   1228 sec   (1140 perm/sec)   p_kst 8.257586e-01   p_cons 3.335714e-04   p_joint 2.650000e-03

Joint ci ratio: 6.399661e-02	ci left: 2.568952e-03	ci right 2.739484e-03	k: 3741	n:1410000
Cons ci ratio: 1.807859e-01	ci left: 3.032023e-04	ci right 3.641291e-04	k: 469	n:1410000
KS ci ratio: 1.516822e-03	ci left: 8.250593e-01	ci right 8.263124e-01	k: 1164218	n:1410000
SFMBT2   1410000 perm   1243 sec   (1134 perm/sec)   p_kst 8.256865e-01   p_cons 3.326241e-04   p_joint 2.653191e-03

Joint ci ratio: 6.379242e-02	ci left: 2.567492e-03	ci right 2.737363e-03	k: 3765	n:1420000
Cons ci ratio: 1.804026e-01	ci left: 3.024119e-04	ci right 3.630369e-04	k: 471	n:1420000
KS ci ratio: 1.511416e-03	ci left: 8.250722e-01	ci right 8.263208e-01	k: 1172490	n:1420000
SFMBT2   1420000 perm   1259 sec   (1128 perm/sec)   p_kst 8.256972e-01   p_cons 3.316901e-04   p_joint 2.651408e-03

Joint ci ratio: 6.354816e-02	ci left: 2.569495e-03	ci right 2.738823e-03	k: 3794	n:1430000
Cons ci ratio: 1.798320e-01	ci left: 3.023004e-04	ci right 3.626905e-04	k: 474	n:1430000
KS ci ratio: 1.506092e-03	ci left: 8.250800e-01	ci right 8.263243e-01	k: 1180755	n:1430000
SFMBT2   1430000 perm   1274 sec   (1122 perm/sec)   p_kst 8.257028e-01   p_cons 3.314685e-04   p_joint 2.653147e-03

Joint ci ratio: 6.351520e-02	ci left: 2.554384e-03	ci right 2.722626e-03	k: 3798	n:1440000
Cons ci ratio: 1.788928e-01	ci left: 3.035175e-04	ci right 3.637998e-04	k: 479	n:1440000
KS ci ratio: 1.500713e-03	ci left: 8.251093e-01	ci right 8.263491e-01	k: 1189051	n:1440000
SFMBT2   1440000 perm   1290 sec   (1117 perm/sec)   p_kst 8.257299e-01   p_cons 3.326389e-04   p_joint 2.637500e-03

Joint ci ratio: 6.345719e-02	ci left: 2.541518e-03	ci right 2.708754e-03	k: 3805	n:1450000
Cons ci ratio: 1.787069e-01	ci left: 3.020830e-04	ci right 3.620113e-04	k: 480	n:1450000
KS ci ratio: 1.495630e-03	ci left: 8.250919e-01	ci right 8.263275e-01	k: 1197280	n:1450000
SFMBT2   1450000 perm   1305 sec   (1111 perm/sec)   p_kst 8.257103e-01   p_cons 3.310345e-04   p_joint 2.624138e-03

Joint ci ratio: 6.323327e-02	ci left: 2.542311e-03	ci right 2.708987e-03	k: 3832	n:1460000
Cons ci ratio: 1.779684e-01	ci left: 3.026314e-04	ci right 3.623937e-04	k: 484	n:1460000
KS ci ratio: 1.490461e-03	ci left: 8.251015e-01	ci right 8.263328e-01	k: 1205548	n:1460000
SFMBT2   1460000 perm   1320 sec   (1106 perm/sec)   p_kst 8.257178e-01   p_cons 3.315068e-04   p_joint 2.624658e-03

Joint ci ratio: 6.305268e-02	ci left: 2.539746e-03	ci right 2.705761e-03	k: 3854	n:1470000
Cons ci ratio: 1.772390e-01	ci left: 3.031728e-04	ci right 3.627703e-04	k: 488	n:1470000
KS ci ratio: 1.485555e-03	ci left: 8.250701e-01	ci right 8.262973e-01	k: 1213756	n:1470000
SFMBT2   1470000 perm   1336 sec   (1101 perm/sec)   p_kst 8.256844e-01   p_cons 3.319728e-04   p_joint 2.621769e-03

Joint ci ratio: 6.281678e-02	ci left: 2.541872e-03	ci right 2.707382e-03	k: 3883	n:1480000
Cons ci ratio: 1.766978e-01	ci left: 3.030616e-04	ci right 3.624359e-04	k: 491	n:1480000
KS ci ratio: 1.480715e-03	ci left: 8.250357e-01	ci right 8.262589e-01	k: 1221959	n:1480000
SFMBT2   1480000 perm   1351 sec   (1095 perm/sec)   p_kst 8.256480e-01   p_cons 3.317568e-04   p_joint 2.623649e-03

Joint ci ratio: 6.306199e-02	ci left: 2.504993e-03	ci right 2.668762e-03	k: 3853	n:1490000
Cons ci ratio: 1.759838e-01	ci left: 3.035937e-04	ci right 3.628064e-04	k: 495	n:1490000
KS ci ratio: 1.475774e-03	ci left: 8.250308e-01	ci right 8.262499e-01	k: 1230205	n:1490000
SFMBT2   1490000 perm   1367 sec   (1090 perm/sec)   p_kst 8.256409e-01   p_cons 3.322148e-04   p_joint 2.585906e-03

Joint ci ratio: 6.331006e-02	ci left: 2.468608e-03	ci right 2.630656e-03	k: 3823	n:1500000
Cons ci ratio: 1.758068e-01	ci left: 3.022070e-04	ci right 3.610837e-04	k: 496	n:1500000
KS ci ratio: 1.470783e-03	ci left: 8.250452e-01	ci right 8.262602e-01	k: 1238480	n:1500000
SFMBT2   1500000 perm   1383 sec   (1085 perm/sec)   p_kst 8.256533e-01   p_cons 3.306667e-04   p_joint 2.548667e-03

Joint ci ratio: 6.317822e-02	ci left: 2.462688e-03	ci right 2.623998e-03	k: 3839	n:1510000
Cons ci ratio: 1.756304e-01	ci left: 3.008388e-04	ci right 3.593838e-04	k: 497	n:1510000
KS ci ratio: 1.465782e-03	ci left: 8.250714e-01	ci right 8.262823e-01	k: 1246773	n:1510000
SFMBT2   1510000 perm   1399 sec   (1080 perm/sec)   p_kst 8.256775e-01   p_cons 3.291391e-04   p_joint 2.542384e-03

Joint ci ratio: 6.166758e-02	ci left: 2.569539e-03	ci right 2.733681e-03	k: 4029	n:1520000
Cons ci ratio: 1.752788e-01	ci left: 3.001176e-04	ci right 3.583929e-04	k: 499	n:1520000
KS ci ratio: 1.460788e-03	ci left: 8.251058e-01	ci right 8.263127e-01	k: 1255079	n:1520000
SFMBT2   1520000 perm   1415 sec   (1075 perm/sec)   p_kst 8.257099e-01   p_cons 3.282895e-04   p_joint 2.650658e-03

Joint ci ratio: 6.189179e-02	ci left: 2.534082e-03	ci right 2.696568e-03	k: 4000	n:1530000
Cons ci ratio: 1.751040e-01	ci left: 2.987809e-04	ci right 3.567327e-04	k: 500	n:1530000
KS ci ratio: 1.455980e-03	ci left: 8.251130e-01	ci right 8.263158e-01	k: 1263344	n:1530000
SFMBT2   1530000 perm   1431 sec   (1069 perm/sec)   p_kst 8.257150e-01   p_cons 3.267974e-04   p_joint 2.614379e-03

Joint ci ratio: 6.174550e-02	ci left: 2.529774e-03	ci right 2.691586e-03	k: 4019	n:1540000
Cons ci ratio: 1.745820e-01	ci left: 2.987036e-04	ci right 3.564495e-04	k: 503	n:1540000
KS ci ratio: 1.451380e-03	ci left: 8.250882e-01	ci right 8.262872e-01	k: 1271560	n:1540000
SFMBT2   1540000 perm   1447 sec   (1064 perm/sec)   p_kst 8.256883e-01   p_cons 3.266234e-04   p_joint 2.609740e-03

Joint ci ratio: 6.177684e-02	ci left: 2.510911e-03	ci right 2.671602e-03	k: 4015	n:1550000
Cons ci ratio: 1.738933e-01	ci left: 2.992446e-04	ci right 3.568429e-04	k: 507	n:1550000
KS ci ratio: 1.446826e-03	ci left: 8.250631e-01	ci right 8.262583e-01	k: 1279775	n:1550000
SFMBT2   1550000 perm   1463 sec   (1059 perm/sec)   p_kst 8.256613e-01   p_cons 3.270968e-04   p_joint 2.590323e-03

Joint ci ratio: 6.160840e-02	ci left: 2.508700e-03	ci right 2.668796e-03	k: 4037	n:1560000
Cons ci ratio: 1.733821e-01	ci left: 2.991659e-04	ci right 3.565620e-04	k: 510	n:1560000
KS ci ratio: 1.442013e-03	ci left: 8.250986e-01	ci right 8.262899e-01	k: 1288084	n:1560000
SFMBT2   1560000 perm   1480 sec   (1054 perm/sec)   p_kst 8.256949e-01   p_cons 3.269231e-04   p_joint 2.587821e-03

Joint ci ratio: 6.136561e-02	ci left: 2.512790e-03	ci right 2.672493e-03	k: 4069	n:1570000
Cons ci ratio: 1.722064e-01	ci left: 3.015262e-04	ci right 3.589421e-04	k: 517	n:1570000
KS ci ratio: 1.437289e-03	ci left: 8.251254e-01	ci right 8.263129e-01	k: 1296380	n:1570000
SFMBT2   1570000 perm   1497 sec   (1049 perm/sec)   p_kst 8.257197e-01   p_cons 3.292994e-04   p_joint 2.591720e-03

Joint ci ratio: 6.117054e-02	ci left: 2.513090e-03	ci right 2.672286e-03	k: 4095	n:1580000
Cons ci ratio: 1.713812e-01	ci left: 3.026463e-04	ci right 3.599708e-04	k: 522	n:1580000
KS ci ratio: 1.432744e-03	ci left: 8.251253e-01	ci right 8.263090e-01	k: 1304634	n:1580000
SFMBT2   1580000 perm   1513 sec   (1044 perm/sec)   p_kst 8.257177e-01   p_cons 3.303797e-04   p_joint 2.591772e-03

Joint ci ratio: 6.099215e-02	ci left: 2.512148e-03	ci right 2.670804e-03	k: 4119	n:1590000
Cons ci ratio: 1.712177e-01	ci left: 3.013448e-04	ci right 3.583627e-04	k: 523	n:1590000
KS ci ratio: 1.428126e-03	ci left: 8.251485e-01	ci right 8.263283e-01	k: 1312925	n:1590000
SFMBT2   1590000 perm   1530 sec   (1039 perm/sec)   p_kst 8.257390e-01   p_cons 3.289308e-04   p_joint 2.590566e-03

Joint ci ratio: 6.081531e-02	ci left: 2.511219e-03	ci right 2.669340e-03	k: 4143	n:1600000
Cons ci ratio: 1.708920e-01	ci left: 3.006579e-04	ci right 3.574264e-04	k: 525	n:1600000
KS ci ratio: 1.423654e-03	ci left: 8.251507e-01	ci right 8.263269e-01	k: 1321183	n:1600000
SFMBT2   1600000 perm   1547 sec   (1034 perm/sec)   p_kst 8.257394e-01   p_cons 3.281250e-04   p_joint 2.589375e-03

Joint ci ratio: 6.076437e-02	ci left: 2.499903e-03	ci right 2.657175e-03	k: 4150	n:1610000
Cons ci ratio: 1.702458e-01	ci left: 3.011688e-04	ci right 3.577968e-04	k: 529	n:1610000
KS ci ratio: 1.419166e-03	ci left: 8.251647e-01	ci right 8.263372e-01	k: 1329460	n:1610000
SFMBT2   1610000 perm   1564 sec   (1030 perm/sec)   p_kst 8.257516e-01   p_cons 3.285714e-04   p_joint 2.577640e-03

Joint ci ratio: 6.070623e-02	ci left: 2.489334e-03	ci right 2.645786e-03	k: 4158	n:1620000
Cons ci ratio: 1.689751e-01	ci left: 3.040385e-04	ci right 3.607359e-04	k: 537	n:1620000
KS ci ratio: 1.414786e-03	ci left: 8.251650e-01	ci right 8.263338e-01	k: 1337715	n:1620000
SFMBT2   1620000 perm   1580 sec   (1025 perm/sec)   p_kst 8.257500e-01   p_cons 3.314815e-04   p_joint 2.566667e-03

Joint ci ratio: 5.765281e-02	ci left: 2.746668e-03	ci right 2.910321e-03	k: 4609	n:1630000
Cons ci ratio: 1.683504e-01	ci left: 3.045236e-04	ci right 3.610802e-04	k: 541	n:1630000
KS ci ratio: 1.410514e-03	ci left: 8.251517e-01	ci right 8.263170e-01	k: 1345948	n:1630000
SFMBT2   1630000 perm   1597 sec   (1021 perm/sec)   p_kst 8.257350e-01   p_cons 3.319018e-04   p_joint 2.827607e-03

Joint ci ratio: 5.623369e-02	ci left: 2.871178e-03	ci right 3.037902e-03	k: 4844	n:1640000
Cons ci ratio: 1.678864e-01	ci left: 3.044190e-04	ci right 3.607847e-04	k: 544	n:1640000
KS ci ratio: 1.406068e-03	ci left: 8.251820e-01	ci right 8.263437e-01	k: 1354252	n:1640000
SFMBT2   1640000 perm   1615 sec   (1016 perm/sec)   p_kst 8.257634e-01   p_cons 3.317073e-04   p_joint 2.953659e-03

Joint ci ratio: 5.602006e-02	ci left: 2.875886e-03	ci right 3.042229e-03	k: 4881	n:1650000
Cons ci ratio: 1.669697e-01	ci left: 3.060581e-04	ci right 3.623867e-04	k: 550	n:1650000
KS ci ratio: 1.402018e-03	ci left: 8.251391e-01	ci right 8.262973e-01	k: 1362436	n:1650000
SFMBT2   1650000 perm   1632 sec   (1011 perm/sec)   p_kst 8.257188e-01   p_cons 3.333333e-04   p_joint 2.958182e-03

Joint ci ratio: 5.586584e-02	ci left: 2.874599e-03	ci right 3.040395e-03	k: 4908	n:1660000
Cons ci ratio: 1.665170e-01	ci left: 3.059462e-04	ci right 3.620862e-04	k: 553	n:1660000
KS ci ratio: 1.397827e-03	ci left: 8.251329e-01	ci right 8.262877e-01	k: 1370680	n:1660000
SFMBT2   1660000 perm   1649 sec   (1006 perm/sec)   p_kst 8.257108e-01   p_cons 3.331325e-04   p_joint 2.956627e-03

Joint ci ratio: 5.584922e-02	ci left: 2.859157e-03	ci right 3.024012e-03	k: 4911	n:1670000
Cons ci ratio: 1.654747e-01	ci left: 3.081317e-04	ci right 3.642836e-04	k: 560	n:1670000
KS ci ratio: 1.393616e-03	ci left: 8.251388e-01	ci right 8.262901e-01	k: 1378944	n:1670000
SFMBT2   1670000 perm   1667 sec   (1002 perm/sec)   p_kst 8.257150e-01   p_cons 3.353293e-04   p_joint 2.940719e-03

Joint ci ratio: 5.532686e-02	ci left: 2.896727e-03	ci right 3.062136e-03	k: 5004	n:1680000
Cons ci ratio: 1.648879e-01	ci left: 3.085801e-04	ci right 3.645945e-04	k: 564	n:1680000
KS ci ratio: 1.389563e-03	ci left: 8.251195e-01	ci right 8.262674e-01	k: 1387166	n:1680000
SFMBT2   1680000 perm   1684 sec   (997 perm/sec)   p_kst 8.256940e-01   p_cons 3.357143e-04   p_joint 2.978571e-03

Joint ci ratio: 5.513433e-02	ci left: 2.900011e-03	ci right 3.065013e-03	k: 5039	n:1690000
Cons ci ratio: 1.643072e-01	ci left: 3.090236e-04	ci right 3.649014e-04	k: 568	n:1690000
KS ci ratio: 1.385687e-03	ci left: 8.250709e-01	ci right 8.262156e-01	k: 1395338	n:1690000
SFMBT2   1690000 perm   1702 sec   (993 perm/sec)   p_kst 8.256438e-01   p_cons 3.360947e-04   p_joint 2.981657e-03

Joint ci ratio: 5.494923e-02	ci left: 2.902677e-03	ci right 3.067259e-03	k: 5073	n:1700000
Cons ci ratio: 1.633056e-01	ci left: 3.111547e-04	ci right 3.670412e-04	k: 575	n:1700000
KS ci ratio: 1.381683e-03	ci left: 8.250564e-01	ci right 8.261978e-01	k: 1403567	n:1700000
SFMBT2   1700000 perm   1720 sec   (989 perm/sec)   p_kst 8.256276e-01   p_cons 3.382353e-04   p_joint 2.984118e-03

Joint ci ratio: 5.481444e-02	ci left: 2.900122e-03	ci right 3.064142e-03	k: 5098	n:1710000
Cons ci ratio: 1.628820e-01	ci left: 3.110178e-04	ci right 3.667207e-04	k: 578	n:1710000
KS ci ratio: 1.377607e-03	ci left: 8.250644e-01	ci right 8.262023e-01	k: 1411834	n:1710000
SFMBT2   1710000 perm   1737 sec   (984 perm/sec)   p_kst 8.256339e-01   p_cons 3.380117e-04   p_joint 2.981287e-03

Joint ci ratio: 5.461652e-02	ci left: 2.904478e-03	ci right 3.068133e-03	k: 5135	n:1720000
Cons ci ratio: 1.623222e-01	ci left: 3.114405e-04	ci right 3.670087e-04	k: 582	n:1720000
KS ci ratio: 1.373806e-03	ci left: 8.250222e-01	ci right 8.261569e-01	k: 1420015	n:1720000
SFMBT2   1720000 perm   1755 sec   (980 perm/sec)   p_kst 8.255901e-01   p_cons 3.383721e-04   p_joint 2.985465e-03

Joint ci ratio: 5.235934e-02	ci left: 3.144908e-03	ci right 3.314566e-03	k: 5586	n:1730000
Cons ci ratio: 1.619062e-01	ci left: 3.113041e-04	ci right 3.666917e-04	k: 585	n:1730000
KS ci ratio: 1.369865e-03	ci left: 8.250164e-01	ci right 8.261479e-01	k: 1428258	n:1730000
SFMBT2   1730000 perm   1773 sec   (976 perm/sec)   p_kst 8.255827e-01   p_cons 3.381503e-04   p_joint 3.228902e-03

Joint ci ratio: 5.223803e-02	ci left: 3.141580e-03	ci right 3.310654e-03	k: 5612	n:1740000
Cons ci ratio: 1.613564e-01	ci left: 3.117208e-04	ci right 3.669760e-04	k: 589	n:1740000
KS ci ratio: 1.365925e-03	ci left: 8.250175e-01	ci right 8.261458e-01	k: 1436513	n:1740000
SFMBT2   1740000 perm   1791 sec   (971 perm/sec)   p_kst 8.255822e-01   p_cons 3.385057e-04   p_joint 3.225287e-03

Joint ci ratio: 5.208051e-02	ci left: 3.142804e-03	ci right 3.311418e-03	k: 5646	n:1750000
Cons ci ratio: 1.612200e-01	ci left: 3.104879e-04	ci right 3.654735e-04	k: 590	n:1750000
KS ci ratio: 1.361927e-03	ci left: 8.250381e-01	ci right 8.261631e-01	k: 1444802	n:1750000
SFMBT2   1750000 perm   1809 sec   (967 perm/sec)   p_kst 8.256011e-01   p_cons 3.371429e-04   p_joint 3.226286e-03

Joint ci ratio: 5.237490e-02	ci left: 3.089617e-03	ci right 3.256343e-03	k: 5583	n:1760000
Cons ci ratio: 1.609479e-01	ci left: 3.098143e-04	ci right 3.645791e-04	k: 592	n:1760000
KS ci ratio: 1.358050e-03	ci left: 8.250403e-01	ci right 8.261620e-01	k: 1453059	n:1760000
SFMBT2   1760000 perm   1828 sec   (963 perm/sec)   p_kst 8.256017e-01   p_cons 3.363636e-04   p_joint 3.172159e-03

Joint ci ratio: 5.223013e-02	ci left: 3.089446e-03	ci right 3.255689e-03	k: 5614	n:1770000
Cons ci ratio: 1.608125e-01	ci left: 3.086062e-04	ci right 3.631070e-04	k: 593	n:1770000
KS ci ratio: 1.354293e-03	ci left: 8.250238e-01	ci right 8.261424e-01	k: 1461283	n:1770000
SFMBT2   1770000 perm   1846 sec   (959 perm/sec)   p_kst 8.255836e-01   p_cons 3.350282e-04   p_joint 3.171751e-03

Joint ci ratio: 5.206806e-02	ci left: 3.091496e-03	ci right 3.257317e-03	k: 5649	n:1780000
Cons ci ratio: 1.601399e-01	ci left: 3.095686e-04	ci right 3.639888e-04	k: 598	n:1780000
KS ci ratio: 1.350394e-03	ci left: 8.250446e-01	ci right 8.261600e-01	k: 1469573	n:1780000
SFMBT2   1780000 perm   1864 sec   (955 perm/sec)   p_kst 8.256028e-01   p_cons 3.359551e-04   p_joint 3.173596e-03

Joint ci ratio: 5.191664e-02	ci left: 3.092422e-03	ci right 3.257796e-03	k: 5682	n:1790000
Cons ci ratio: 1.594756e-01	ci left: 3.105208e-04	ci right 3.648602e-04	k: 603	n:1790000
KS ci ratio: 1.346473e-03	ci left: 8.250769e-01	ci right 8.261891e-01	k: 1477884	n:1790000
SFMBT2   1790000 perm   1883 sec   (951 perm/sec)   p_kst 8.256335e-01   p_cons 3.368715e-04   p_joint 3.174302e-03

Joint ci ratio: 5.187591e-02	ci left: 3.080176e-03	ci right 3.244762e-03	k: 5691	n:1800000
Cons ci ratio: 1.590810e-01	ci left: 3.103959e-04	ci right 3.645663e-04	k: 606	n:1800000
KS ci ratio: 1.342713e-03	ci left: 8.250816e-01	ci right 8.261907e-01	k: 1486146	n:1800000
SFMBT2   1800000 perm   1901 sec   (947 perm/sec)   p_kst 8.256367e-01   p_cons 3.366667e-04   p_joint 3.161667e-03

Joint ci ratio: 4.999899e-02	ci left: 3.299894e-03	ci right 3.469657e-03	k: 6125	n:1810000
Cons ci ratio: 1.583005e-01	ci left: 3.118643e-04	ci right 3.659985e-04	k: 612	n:1810000
KS ci ratio: 1.339151e-03	ci left: 8.250503e-01	ci right 8.261564e-01	k: 1494343	n:1810000
SFMBT2   1810000 perm   1920 sec   (943 perm/sec)   p_kst 8.256039e-01   p_cons 3.381215e-04   p_joint 3.383978e-03

Joint ci ratio: 5.024281e-02	ci left: 3.249749e-03	ci right 3.417771e-03	k: 6066	n:1820000
Cons ci ratio: 1.581716e-01	ci left: 3.106785e-04	ci right 3.645587e-04	k: 613	n:1820000
KS ci ratio: 1.335531e-03	ci left: 8.250380e-01	ci right 8.261412e-01	k: 1502574	n:1820000
SFMBT2   1820000 perm   1938 sec   (939 perm/sec)   p_kst 8.255901e-01   p_cons 3.368132e-04   p_joint 3.332967e-03

Joint ci ratio: 5.045649e-02	ci left: 3.204471e-03	ci right 3.370877e-03	k: 6015	n:1830000
Cons ci ratio: 1.576589e-01	ci left: 3.110802e-04	ci right 3.648387e-04	k: 617	n:1830000
KS ci ratio: 1.332005e-03	ci left: 8.250117e-01	ci right 8.261119e-01	k: 1510779	n:1830000
SFMBT2   1830000 perm   1957 sec   (935 perm/sec)   p_kst 8.255623e-01   p_cons 3.371585e-04   p_joint 3.286885e-03

Joint ci ratio: 5.033537e-02	ci left: 3.202618e-03	ci right 3.368517e-03	k: 6044	n:1840000
Cons ci ratio: 1.572776e-01	ci left: 3.109557e-04	ci right 3.645505e-04	k: 620	n:1840000
KS ci ratio: 1.328322e-03	ci left: 8.250259e-01	ci right 8.261231e-01	k: 1519058	n:1840000
SFMBT2   1840000 perm   1976 sec   (931 perm/sec)   p_kst 8.255750e-01   p_cons 3.369565e-04   p_joint 3.284783e-03

Joint ci ratio: 5.024417e-02	ci left: 3.197048e-03	ci right 3.362350e-03	k: 6066	n:1850000
Cons ci ratio: 1.570250e-01	ci left: 3.103134e-04	ci right 3.637035e-04	k: 622	n:1850000
KS ci ratio: 1.324592e-03	ci left: 8.250568e-01	ci right 8.261509e-01	k: 1527368	n:1850000
SFMBT2   1850000 perm   1996 sec   (927 perm/sec)   p_kst 8.256043e-01   p_cons 3.362162e-04   p_joint 3.278919e-03

Joint ci ratio: 5.013282e-02	ci left: 3.194194e-03	ci right 3.358972e-03	k: 6093	n:1860000
Cons ci ratio: 1.563986e-01	ci left: 3.112279e-04	ci right 3.645416e-04	k: 627	n:1860000
KS ci ratio: 1.320938e-03	ci left: 8.250776e-01	ci right 8.261687e-01	k: 1535660	n:1860000
SFMBT2   1860000 perm   2015 sec   (923 perm/sec)   p_kst 8.256237e-01   p_cons 3.370968e-04   p_joint 3.275806e-03

Joint ci ratio: 5.014977e-02	ci left: 3.175000e-03	ci right 3.338844e-03	k: 6089	n:1870000
Cons ci ratio: 1.559028e-01	ci left: 3.116190e-04	ci right 3.648148e-04	k: 631	n:1870000
KS ci ratio: 1.317576e-03	ci left: 8.250409e-01	ci right 8.261292e-01	k: 1543845	n:1870000
SFMBT2   1870000 perm   2034 sec   (919 perm/sec)   p_kst 8.255856e-01   p_cons 3.374332e-04   p_joint 3.256150e-03

Joint ci ratio: 5.019157e-02	ci left: 3.152858e-03	ci right 3.315700e-03	k: 6079	n:1880000
Cons ci ratio: 1.552897e-01	ci left: 3.125175e-04	ci right 3.656373e-04	k: 636	n:1880000
KS ci ratio: 1.313943e-03	ci left: 8.250696e-01	ci right 8.261549e-01	k: 1552152	n:1880000
SFMBT2   1880000 perm   2053 sec   (916 perm/sec)   p_kst 8.256128e-01   p_cons 3.382979e-04   p_joint 3.233511e-03

Joint ci ratio: 5.012175e-02	ci left: 3.145058e-03	ci right 3.307264e-03	k: 6096	n:1890000
Cons ci ratio: 1.548044e-01	ci left: 3.128982e-04	ci right 3.659011e-04	k: 640	n:1890000
KS ci ratio: 1.310631e-03	ci left: 8.250339e-01	ci right 8.261164e-01	k: 1560338	n:1890000
SFMBT2   1890000 perm   2073 sec   (912 perm/sec)   p_kst 8.255757e-01   p_cons 3.386243e-04   p_joint 3.225397e-03

Joint ci ratio: 5.086833e-02	ci left: 3.036519e-03	ci right 3.195528e-03	k: 5919	n:1900000
Cons ci ratio: 1.544434e-01	ci left: 3.127693e-04	ci right 3.656153e-04	k: 643	n:1900000
KS ci ratio: 1.307339e-03	ci left: 8.249996e-01	ci right 8.260794e-01	k: 1568526	n:1900000
SFMBT2   1900000 perm   2092 sec   (908 perm/sec)   p_kst 8.255400e-01   p_cons 3.384211e-04   p_joint 3.115263e-03

Joint ci ratio: 5.073139e-02	ci left: 3.037162e-03	ci right 3.195764e-03	k: 5951	n:1910000
Cons ci ratio: 1.539660e-01	ci left: 3.131452e-04	ci right 3.658761e-04	k: 647	n:1910000
KS ci ratio: 1.303811e-03	ci left: 8.250234e-01	ci right 8.261003e-01	k: 1576824	n:1910000
SFMBT2   1910000 perm   2112 sec   (904 perm/sec)   p_kst 8.255623e-01   p_cons 3.387435e-04   p_joint 3.115707e-03

Joint ci ratio: 5.057860e-02	ci left: 3.039856e-03	ci right 3.198107e-03	k: 5987	n:1920000
Cons ci ratio: 1.537290e-01	ci left: 3.125158e-04	ci right 3.650522e-04	k: 649	n:1920000
KS ci ratio: 1.300444e-03	ci left: 8.250177e-01	ci right 8.260918e-01	k: 1585066	n:1920000
SFMBT2   1920000 perm   2132 sec   (901 perm/sec)   p_kst 8.255552e-01   p_cons 3.380208e-04   p_joint 3.118229e-03

Joint ci ratio: 5.043137e-02	ci left: 3.042011e-03	ci right 3.199900e-03	k: 6022	n:1930000
Cons ci ratio: 1.529077e-01	ci left: 3.143843e-04	ci right 3.669267e-04	k: 656	n:1930000
KS ci ratio: 1.296967e-03	ci left: 8.250421e-01	ci right 8.261134e-01	k: 1593366	n:1930000
SFMBT2   1930000 perm   2151 sec   (897 perm/sec)   p_kst 8.255782e-01   p_cons 3.398964e-04   p_joint 3.120207e-03

Joint ci ratio: 5.042758e-02	ci left: 3.026839e-03	ci right 3.183928e-03	k: 6023	n:1940000
Cons ci ratio: 1.523291e-01	ci left: 3.152427e-04	ci right 3.677110e-04	k: 661	n:1940000
KS ci ratio: 1.293538e-03	ci left: 8.250617e-01	ci right 8.261301e-01	k: 1601657	n:1940000
SFMBT2   1940000 perm   2171 sec   (893 perm/sec)   p_kst 8.255964e-01   p_cons 3.407216e-04   p_joint 3.104639e-03

Joint ci ratio: 5.044479e-02	ci left: 3.009291e-03	ci right 3.165524e-03	k: 6019	n:1950000
Cons ci ratio: 1.520996e-01	ci left: 3.146126e-04	ci right 3.668900e-04	k: 663	n:1950000
KS ci ratio: 1.290238e-03	ci left: 8.250585e-01	ci right 8.261242e-01	k: 1609904	n:1950000
SFMBT2   1950000 perm   2191 sec   (890 perm/sec)   p_kst 8.255918e-01   p_cons 3.400000e-04   p_joint 3.086667e-03

Joint ci ratio: 5.175058e-02	ci left: 2.843329e-03	ci right 2.994881e-03	k: 5720	n:1960000
Cons ci ratio: 1.518711e-01	ci left: 3.139891e-04	ci right 3.660773e-04	k: 665	n:1960000
KS ci ratio: 1.286992e-03	ci left: 8.250486e-01	ci right 8.261116e-01	k: 1618138	n:1960000
SFMBT2   1960000 perm   2211 sec   (886 perm/sec)   p_kst 8.255806e-01   p_cons 3.392857e-04   p_joint 2.918367e-03

Joint ci ratio: 5.200686e-02	ci left: 2.800836e-03	ci right 2.950885e-03	k: 5664	n:1970000
Cons ci ratio: 1.517573e-01	ci left: 3.128835e-04	ci right 3.647459e-04	k: 666	n:1970000
KS ci ratio: 1.283805e-03	ci left: 8.250313e-01	ci right 8.260916e-01	k: 1626357	n:1970000
SFMBT2   1970000 perm   2232 sec   (883 perm/sec)   p_kst 8.255619e-01   p_cons 3.380711e-04   p_joint 2.875127e-03

Joint ci ratio: 5.223428e-02	ci left: 2.762264e-03	ci right 2.910913e-03	k: 5615	n:1980000
Cons ci ratio: 1.513042e-01	ci left: 3.132469e-04	ci right 3.650005e-04	k: 670	n:1980000
KS ci ratio: 1.280605e-03	ci left: 8.250222e-01	ci right 8.260799e-01	k: 1634592	n:1980000
SFMBT2   1980000 perm   2251 sec   (879 perm/sec)   p_kst 8.255515e-01   p_cons 3.383838e-04   p_joint 2.835859e-03

Joint ci ratio: 5.209068e-02	ci left: 2.763758e-03	ci right 2.912066e-03	k: 5646	n:1990000
Cons ci ratio: 1.509671e-01	ci left: 3.131234e-04	ci right 3.647309e-04	k: 673	n:1990000
KS ci ratio: 1.277369e-03	ci left: 8.250268e-01	ci right 8.260818e-01	k: 1642854	n:1990000
SFMBT2   1990000 perm   2272 sec   (876 perm/sec)   p_kst 8.255548e-01   p_cons 3.381910e-04   p_joint 2.837186e-03

Joint ci ratio: 5.193449e-02	ci left: 2.766719e-03	ci right 2.914727e-03	k: 5680	n:2000000
Cons ci ratio: 1.502995e-01	ci left: 3.144447e-04	ci right 3.660202e-04	k: 679	n:2000000
KS ci ratio: 1.274206e-03	ci left: 8.250203e-01	ci right 8.260727e-01	k: 1651094	n:2000000
SFMBT2   2000000 perm   2292 sec   (873 perm/sec)   p_kst 8.255470e-01   p_cons 3.395000e-04   p_joint 2.840000e-03

Joint ci ratio: 5.178879e-02	ci left: 2.768668e-03	ci right 2.916353e-03	k: 5712	n:2010000
Cons ci ratio: 1.496407e-01	ci left: 3.157534e-04	ci right 3.672962e-04	k: 685	n:2010000
KS ci ratio: 1.270987e-03	ci left: 8.250319e-01	ci right 8.260816e-01	k: 1659370	n:2010000
SFMBT2   2010000 perm   2312 sec   (869 perm/sec)   p_kst 8.255572e-01   p_cons 3.407960e-04   p_joint 2.841791e-03

Joint ci ratio: 5.262240e-02	ci left: 2.667501e-03	ci right 2.812149e-03	k: 5533	n:2020000
Cons ci ratio: 1.487756e-01	ci left: 3.180028e-04	ci right 3.695860e-04	k: 693	n:2020000
KS ci ratio: 1.267932e-03	ci left: 8.250116e-01	ci right 8.260588e-01	k: 1667582	n:2020000
SFMBT2   2020000 perm   2333 sec   (866 perm/sec)   p_kst 8.255356e-01   p_cons 3.430693e-04   p_joint 2.739109e-03

Joint ci ratio: 5.257515e-02	ci left: 2.659221e-03	ci right 2.803287e-03	k: 5543	n:2030000
Cons ci ratio: 1.482425e-01	ci left: 3.188078e-04	ci right 3.703199e-04	k: 698	n:2030000
KS ci ratio: 1.264678e-03	ci left: 8.250418e-01	ci right 8.260863e-01	k: 1675896	n:2030000
SFMBT2   2030000 perm   2354 sec   (862 perm/sec)   p_kst 8.255645e-01   p_cons 3.438424e-04   p_joint 2.730542e-03

Joint ci ratio: 5.279558e-02	ci left: 2.623933e-03	ci right 2.766701e-03	k: 5497	n:2040000
Cons ci ratio: 1.479254e-01	ci left: 3.186611e-04	ci right 3.700296e-04	k: 701	n:2040000
KS ci ratio: 1.261435e-03	ci left: 8.250752e-01	ci right 8.261171e-01	k: 1684217	n:2040000
SFMBT2   2040000 perm   2375 sec   (859 perm/sec)   p_kst 8.255966e-01   p_cons 3.436275e-04   p_joint 2.694608e-03

Joint ci ratio: 5.270469e-02	ci left: 2.620279e-03	ci right 2.762595e-03	k: 5516	n:2050000
Cons ci ratio: 1.477152e-01	ci left: 3.180462e-04	ci right 3.692363e-04	k: 703	n:2050000
KS ci ratio: 1.258495e-03	ci left: 8.250442e-01	ci right 8.260836e-01	k: 1692407	n:2050000
SFMBT2   2050000 perm   2396 sec   (856 perm/sec)   p_kst 8.255644e-01   p_cons 3.429268e-04   p_joint 2.690732e-03

Joint ci ratio: 5.278665e-02	ci left: 2.599415e-03	ci right 2.740824e-03	k: 5499	n:2060000
Cons ci ratio: 1.476104e-01	ci left: 3.169698e-04	ci right 3.679472e-04	k: 704	n:2060000
KS ci ratio: 1.255330e-03	ci left: 8.250700e-01	ci right 8.261068e-01	k: 1700713	n:2060000
SFMBT2   2060000 perm   2417 sec   (852 perm/sec)   p_kst 8.255888e-01   p_cons 3.417476e-04   p_joint 2.669417e-03

Joint ci ratio: 5.262892e-02	ci left: 2.602589e-03	ci right 2.743735e-03	k: 5532	n:2070000
Cons ci ratio: 1.472974e-01	ci left: 3.168343e-04	ci right 3.676724e-04	k: 707	n:2070000
KS ci ratio: 1.252346e-03	ci left: 8.250592e-01	ci right 8.260935e-01	k: 1708944	n:2070000
SFMBT2   2070000 perm   2438 sec   (849 perm/sec)   p_kst 8.255768e-01   p_cons 3.415459e-04   p_joint 2.672464e-03

Joint ci ratio: 5.249624e-02	ci left: 2.603361e-03	ci right 2.744183e-03	k: 5560	n:2080000
Cons ci ratio: 1.469863e-01	ci left: 3.167003e-04	ci right 3.674001e-04	k: 710	n:2080000
KS ci ratio: 1.249451e-03	ci left: 8.250331e-01	ci right 8.260650e-01	k: 1717143	n:2080000
SFMBT2   2080000 perm   2460 sec   (846 perm/sec)   p_kst 8.255495e-01   p_cons 3.413462e-04   p_joint 2.673077e-03

Joint ci ratio: 5.271084e-02	ci left: 2.569656e-03	ci right 2.709240e-03	k: 5515	n:2090000
Cons ci ratio: 1.463699e-01	ci left: 3.179505e-04	ci right 3.686183e-04	k: 716	n:2090000
KS ci ratio: 1.246449e-03	ci left: 8.250365e-01	ci right 8.260660e-01	k: 1725403	n:2090000
SFMBT2   2090000 perm   2481 sec   (842 perm/sec)   p_kst 8.255517e-01   p_cons 3.425837e-04   p_joint 2.638756e-03

Joint ci ratio: 5.259182e-02	ci left: 2.569168e-03	ci right 2.708400e-03	k: 5540	n:2100000
Cons ci ratio: 1.456605e-01	ci left: 3.196480e-04	ci right 3.703180e-04	k: 723	n:2100000
KS ci ratio: 1.243480e-03	ci left: 8.250370e-01	ci right 8.260640e-01	k: 1733657	n:2100000
SFMBT2   2100000 perm   2502 sec   (839 perm/sec)   p_kst 8.255510e-01   p_cons 3.442857e-04   p_joint 2.638095e-03

Joint ci ratio: 5.249251e-02	ci left: 2.566813e-03	ci right 2.705647e-03	k: 5561	n:2110000
Cons ci ratio: 1.454598e-01	ci left: 3.190464e-04	ci right 3.695453e-04	k: 725	n:2110000
KS ci ratio: 1.240564e-03	ci left: 8.250304e-01	ci right 8.260550e-01	k: 1741896	n:2110000
SFMBT2   2110000 perm   2524 sec   (836 perm/sec)   p_kst 8.255431e-01   p_cons 3.436019e-04   p_joint 2.635545e-03

Joint ci ratio: 5.284648e-02	ci left: 2.520258e-03	ci right 2.657521e-03	k: 5487	n:2120000
Cons ci ratio: 1.450607e-01	ci left: 3.193597e-04	ci right 3.697575e-04	k: 729	n:2120000
KS ci ratio: 1.237700e-03	ci left: 8.250163e-01	ci right 8.260385e-01	k: 1750119	n:2120000
SFMBT2   2120000 perm   2546 sec   (833 perm/sec)   p_kst 8.255278e-01   p_cons 3.438679e-04   p_joint 2.588208e-03

Joint ci ratio: 5.292421e-02	ci left: 2.501013e-03	ci right 2.637434e-03	k: 5471	n:2130000
Cons ci ratio: 1.447636e-01	ci left: 3.192177e-04	ci right 3.694810e-04	k: 732	n:2130000
KS ci ratio: 1.234867e-03	ci left: 8.250000e-01	ci right 8.260198e-01	k: 1758337	n:2130000
SFMBT2   2130000 perm   2567 sec   (830 perm/sec)   p_kst 8.255103e-01   p_cons 3.436620e-04   p_joint 2.568545e-03

Joint ci ratio: 5.117719e-02	ci left: 2.664130e-03	ci right 2.804511e-03	k: 5850	n:2140000
Cons ci ratio: 1.442723e-01	ci left: 3.199780e-04	ci right 3.701753e-04	k: 737	n:2140000
KS ci ratio: 1.231980e-03	ci left: 8.250006e-01	ci right 8.260181e-01	k: 1766591	n:2140000
SFMBT2   2140000 perm   2589 sec   (827 perm/sec)   p_kst 8.255098e-01   p_cons 3.443925e-04   p_joint 2.733645e-03

Joint ci ratio: 5.105516e-02	ci left: 2.664596e-03	ci right 2.804656e-03	k: 5878	n:2150000
Cons ci ratio: 1.439799e-01	ci left: 3.198348e-04	ci right 3.698992e-04	k: 740	n:2150000
KS ci ratio: 1.229171e-03	ci left: 8.249878e-01	ci right 8.260029e-01	k: 1774816	n:2150000
SFMBT2   2150000 perm   2610 sec   (824 perm/sec)   p_kst 8.254958e-01   p_cons 3.441860e-04   p_joint 2.733953e-03

Joint ci ratio: 5.092104e-02	ci left: 2.666428e-03	ci right 2.806206e-03	k: 5909	n:2160000
Cons ci ratio: 1.436894e-01	ci left: 3.196930e-04	ci right 3.696256e-04	k: 743	n:2160000
KS ci ratio: 1.226216e-03	ci left: 8.250140e-01	ci right 8.260268e-01	k: 1783125	n:2160000
SFMBT2   2160000 perm   2632 sec   (821 perm/sec)   p_kst 8.255208e-01   p_cons 3.439815e-04   p_joint 2.735648e-03

Joint ci ratio: 5.078797e-02	ci left: 2.668245e-03	ci right 2.807742e-03	k: 5940	n:2170000
Cons ci ratio: 1.432089e-01	ci left: 3.204412e-04	ci right 3.703090e-04	k: 748	n:2170000
KS ci ratio: 1.223343e-03	ci left: 8.250257e-01	ci right 8.260361e-01	k: 1791403	n:2170000
SFMBT2   2170000 perm   2654 sec   (818 perm/sec)   p_kst 8.255313e-01   p_cons 3.447005e-04   p_joint 2.737327e-03

Joint ci ratio: 5.065594e-02	ci left: 2.670045e-03	ci right 2.809263e-03	k: 5971	n:2180000
Cons ci ratio: 1.430182e-01	ci left: 3.198559e-04	ci right 3.695606e-04	k: 750	n:2180000
KS ci ratio: 1.220542e-03	ci left: 8.250249e-01	ci right 8.260329e-01	k: 1799654	n:2180000
SFMBT2   2180000 perm   2676 sec   (815 perm/sec)   p_kst 8.255294e-01   p_cons 3.440367e-04   p_joint 2.738991e-03

Joint ci ratio: 5.069884e-02	ci left: 2.653344e-03	ci right 2.791812e-03	k: 5961	n:2190000
Cons ci ratio: 1.428281e-01	ci left: 3.192759e-04	ci right 3.688190e-04	k: 752	n:2190000
KS ci ratio: 1.217659e-03	ci left: 8.250483e-01	ci right 8.260540e-01	k: 1807958	n:2190000
SFMBT2   2190000 perm   2697 sec   (812 perm/sec)   p_kst 8.255516e-01   p_cons 3.433790e-04   p_joint 2.721918e-03

Joint ci ratio: 5.140866e-02	ci left: 2.568135e-03	ci right 2.704088e-03	k: 5798	n:2200000
Cons ci ratio: 1.426389e-01	ci left: 3.187013e-04	ci right 3.680841e-04	k: 754	n:2200000
KS ci ratio: 1.214893e-03	ci left: 8.250483e-01	ci right 8.260517e-01	k: 1816211	n:2200000
SFMBT2   2200000 perm   2720 sec   (809 perm/sec)   p_kst 8.255505e-01   p_cons 3.427273e-04   p_joint 2.635455e-03

Joint ci ratio: 5.128939e-02	ci left: 2.568575e-03	ci right 2.704226e-03	k: 5825	n:2210000
Cons ci ratio: 1.422625e-01	ci left: 3.190046e-04	ci right 3.682930e-04	k: 758	n:2210000
KS ci ratio: 1.212144e-03	ci left: 8.250488e-01	ci right 8.260499e-01	k: 1824465	n:2210000
SFMBT2   2210000 perm   2742 sec   (806 perm/sec)   p_kst 8.255498e-01   p_cons 3.429864e-04   p_joint 2.635747e-03

Joint ci ratio: 5.155656e-02	ci left: 2.530324e-03	ci right 2.664672e-03	k: 5765	n:2220000
Cons ci ratio: 1.419822e-01	ci left: 3.188710e-04	ci right 3.680334e-04	k: 761	n:2220000
KS ci ratio: 1.209336e-03	ci left: 8.250677e-01	ci right 8.260666e-01	k: 1832760	n:2220000
SFMBT2   2220000 perm   2764 sec   (803 perm/sec)   p_kst 8.255676e-01   p_cons 3.427928e-04   p_joint 2.596847e-03

Joint ci ratio: 5.145407e-02	ci left: 2.529159e-03	ci right 2.663170e-03	k: 5788	n:2230000
Cons ci ratio: 1.415186e-01	ci left: 3.196037e-04	ci right 3.687046e-04	k: 766	n:2230000
KS ci ratio: 1.206606e-03	ci left: 8.250726e-01	ci right 8.260692e-01	k: 1841024	n:2230000
SFMBT2   2230000 perm   2787 sec   (800 perm/sec)   p_kst 8.255713e-01   p_cons 3.434978e-04   p_joint 2.595516e-03

Joint ci ratio: 5.150345e-02	ci left: 2.513020e-03	ci right 2.646307e-03	k: 5777	n:2240000
Cons ci ratio: 1.412427e-01	ci left: 3.194688e-04	ci right 3.684452e-04	k: 769	n:2240000
KS ci ratio: 1.203889e-03	ci left: 8.250788e-01	ci right 8.260731e-01	k: 1849291	n:2240000
SFMBT2   2240000 perm   2809 sec   (797 perm/sec)   p_kst 8.255763e-01   p_cons 3.433036e-04   p_joint 2.579018e-03

Joint ci ratio: 5.141906e-02	ci left: 2.510186e-03	ci right 2.643099e-03	k: 5796	n:2250000
Cons ci ratio: 1.408772e-01	ci left: 3.197640e-04	ci right 3.686482e-04	k: 773	n:2250000
KS ci ratio: 1.201149e-03	ci left: 8.250947e-01	ci right 8.260867e-01	k: 1857580	n:2250000
SFMBT2   2250000 perm   2832 sec   (795 perm/sec)   p_kst 8.255911e-01   p_cons 3.435556e-04   p_joint 2.576000e-03

Joint ci ratio: 5.132181e-02	ci left: 2.508689e-03	ci right 2.641263e-03	k: 5818	n:2260000
Cons ci ratio: 1.406956e-01	ci left: 3.192029e-04	ci right 3.679331e-04	k: 775	n:2260000
KS ci ratio: 1.198564e-03	ci left: 8.250776e-01	ci right 8.260676e-01	k: 1865795	n:2260000
SFMBT2   2260000 perm   2855 sec   (792 perm/sec)   p_kst 8.255730e-01   p_cons 3.429204e-04   p_joint 2.574336e-03

Joint ci ratio: 5.163891e-02	ci left: 2.466761e-03	ci right 2.597949e-03	k: 5747	n:2270000
Cons ci ratio: 1.404244e-01	ci left: 3.190718e-04	ci right 3.676803e-04	k: 778	n:2270000
KS ci ratio: 1.195845e-03	ci left: 8.250969e-01	ci right 8.260846e-01	k: 1874092	n:2270000
SFMBT2   2270000 perm   2878 sec   (789 perm/sec)   p_kst 8.255912e-01   p_cons 3.427313e-04   p_joint 2.531718e-03

Joint ci ratio: 5.190695e-02	ci left: 2.430399e-03	ci right 2.560344e-03	k: 5688	n:2280000
Cons ci ratio: 1.402446e-01	ci left: 3.185188e-04	ci right 3.669756e-04	k: 780	n:2280000
KS ci ratio: 1.193260e-03	ci left: 8.250884e-01	ci right 8.260739e-01	k: 1882326	n:2280000
SFMBT2   2280000 perm   2901 sec   (786 perm/sec)   p_kst 8.255816e-01   p_cons 3.421053e-04   p_joint 2.494737e-03

Joint ci ratio: 5.178419e-02	ci left: 2.431423e-03	ci right 2.561107e-03	k: 5715	n:2290000
Cons ci ratio: 1.400654e-01	ci left: 3.179706e-04	ci right 3.662771e-04	k: 782	n:2290000
KS ci ratio: 1.190687e-03	ci left: 8.250808e-01	ci right 8.260642e-01	k: 1890562	n:2290000
SFMBT2   2290000 perm   2924 sec   (783 perm/sec)   p_kst 8.255729e-01   p_cons 3.414847e-04   p_joint 2.495633e-03

Joint ci ratio: 5.166680e-02	ci left: 2.432010e-03	ci right 2.561422e-03	k: 5741	n:2300000
Cons ci ratio: 1.398869e-01	ci left: 3.174272e-04	ci right 3.655846e-04	k: 784	n:2300000
KS ci ratio: 1.188056e-03	ci left: 8.250916e-01	ci right 8.260728e-01	k: 1898840	n:2300000
SFMBT2   2300000 perm   2947 sec   (780 perm/sec)   p_kst 8.255826e-01   p_cons 3.408696e-04   p_joint 2.496087e-03

Joint ci ratio: 5.010355e-02	ci left: 2.576630e-03	ci right 2.709470e-03	k: 6104	n:2310000
Cons ci ratio: 1.394435e-01	ci left: 3.181420e-04	ci right 3.662420e-04	k: 789	n:2310000
KS ci ratio: 1.185460e-03	ci left: 8.250979e-01	ci right 8.260770e-01	k: 1907108	n:2310000
SFMBT2   2310000 perm   2970 sec   (778 perm/sec)   p_kst 8.255879e-01   p_cons 3.415584e-04   p_joint 2.642424e-03

Joint ci ratio: 5.093450e-02	ci left: 2.481680e-03	ci right 2.611808e-03	k: 5907	n:2320000
Cons ci ratio: 1.393554e-01	ci left: 3.171866e-04	ci right 3.651095e-04	k: 790	n:2320000
KS ci ratio: 1.182845e-03	ci left: 8.251128e-01	ci right 8.260898e-01	k: 1915396	n:2320000
SFMBT2   2320000 perm   2993 sec   (775 perm/sec)   p_kst 8.256017e-01   p_cons 3.405172e-04   p_joint 2.546121e-03

Joint ci ratio: 5.081420e-02	ci left: 2.482893e-03	ci right 2.612769e-03	k: 5935	n:2330000
Cons ci ratio: 1.390919e-01	ci left: 3.170680e-04	ci right 3.648749e-04	k: 793	n:2330000
KS ci ratio: 1.180261e-03	ci left: 8.251246e-01	ci right 8.260995e-01	k: 1923677	n:2330000
SFMBT2   2330000 perm   3017 sec   (772 perm/sec)   p_kst 8.256124e-01   p_cons 3.403433e-04   p_joint 2.547210e-03

Joint ci ratio: 5.073741e-02	ci left: 2.479877e-03	ci right 2.609393e-03	k: 5953	n:2340000
Cons ci ratio: 1.388298e-01	ci left: 3.169505e-04	ci right 3.646422e-04	k: 796	n:2340000
KS ci ratio: 1.177747e-03	ci left: 8.251230e-01	ci right 8.260958e-01	k: 1931927	n:2340000
SFMBT2   2340000 perm   3040 sec   (770 perm/sec)   p_kst 8.256098e-01   p_cons 3.401709e-04   p_joint 2.544017e-03

Joint ci ratio: 5.064822e-02	ci left: 2.478147e-03	ci right 2.607339e-03	k: 5974	n:2350000
Cons ci ratio: 1.386560e-01	ci left: 3.164233e-04	ci right 3.639711e-04	k: 798	n:2350000
KS ci ratio: 1.175254e-03	ci left: 8.251202e-01	ci right 8.260909e-01	k: 1940174	n:2350000
SFMBT2   2350000 perm   3064 sec   (767 perm/sec)   p_kst 8.256060e-01   p_cons 3.395745e-04   p_joint 2.542128e-03

Joint ci ratio: 5.052572e-02	ci left: 2.479779e-03	ci right 2.608734e-03	k: 6003	n:2360000
Cons ci ratio: 1.383102e-01	ci left: 3.167187e-04	ci right 3.641824e-04	k: 802	n:2360000
KS ci ratio: 1.172827e-03	ci left: 8.251051e-01	ci right 8.260738e-01	k: 1948392	n:2360000
SFMBT2   2360000 perm   3088 sec   (764 perm/sec)   p_kst 8.255898e-01   p_cons 3.398305e-04   p_joint 2.543644e-03

Joint ci ratio: 5.042505e-02	ci left: 2.479315e-03	ci right 2.607981e-03	k: 6027	n:2370000
Cons ci ratio: 1.379670e-01	ci left: 3.170118e-04	ci right 3.643918e-04	k: 806	n:2370000
KS ci ratio: 1.170355e-03	ci left: 8.251049e-01	ci right 8.260715e-01	k: 1956645	n:2370000
SFMBT2   2370000 perm   3112 sec   (762 perm/sec)   p_kst 8.255886e-01   p_cons 3.400844e-04   p_joint 2.543038e-03

Joint ci ratio: 5.031248e-02	ci left: 2.480099e-03	ci right 2.608511e-03	k: 6054	n:2380000
Cons ci ratio: 1.377113e-01	ci left: 3.168969e-04	ci right 3.641647e-04	k: 809	n:2380000
KS ci ratio: 1.167761e-03	ci left: 8.251388e-01	ci right 8.261033e-01	k: 1964979	n:2380000
SFMBT2   2380000 perm   3136 sec   (759 perm/sec)   p_kst 8.256214e-01   p_cons 3.399160e-04   p_joint 2.543697e-03

Joint ci ratio: 5.019653e-02	ci left: 2.481291e-03	ci right 2.609459e-03	k: 6082	n:2390000
Cons ci ratio: 1.373725e-01	ci left: 3.171870e-04	ci right 3.643722e-04	k: 813	n:2390000
KS ci ratio: 1.165281e-03	ci left: 8.251481e-01	ci right 8.261106e-01	k: 1973255	n:2390000
SFMBT2   2390000 perm   3160 sec   (756 perm/sec)   p_kst 8.256297e-01   p_cons 3.401674e-04   p_joint 2.544770e-03

Joint ci ratio: 5.010604e-02	ci left: 2.480004e-03	ci right 2.607868e-03	k: 6104	n:2400000
Cons ci ratio: 1.370362e-01	ci left: 3.174748e-04	ci right 3.645778e-04	k: 817	n:2400000
KS ci ratio: 1.162880e-03	ci left: 8.251419e-01	ci right 8.261024e-01	k: 1981494	n:2400000
SFMBT2   2400000 perm   3183 sec   (754 perm/sec)   p_kst 8.256225e-01   p_cons 3.404167e-04   p_joint 2.543333e-03

Joint ci ratio: 4.999968e-02	ci left: 2.480367e-03	ci right 2.607970e-03	k: 6130	n:2410000
Cons ci ratio: 1.367856e-01	ci left: 3.173597e-04	ci right 3.643525e-04	k: 820	n:2410000
KS ci ratio: 1.160405e-03	ci left: 8.251577e-01	ci right 8.261162e-01	k: 1989786	n:2410000
SFMBT2   2410000 perm   3207 sec   (751 perm/sec)   p_kst 8.256373e-01   p_cons 3.402490e-04   p_joint 2.543568e-03

Joint ci ratio: 4.835898e-02	ci left: 2.642359e-03	ci right 2.773712e-03	k: 6552	n:2420000
Cons ci ratio: 1.364536e-01	ci left: 3.176447e-04	ci right 3.645563e-04	k: 824	n:2420000
KS ci ratio: 1.157946e-03	ci left: 8.251734e-01	ci right 8.261299e-01	k: 1998078	n:2420000
SFMBT2   2420000 perm   3232 sec   (749 perm/sec)   p_kst 8.256521e-01   p_cons 3.404959e-04   p_joint 2.707438e-03

Joint ci ratio: 4.834815e-02	ci left: 2.632704e-03	ci right 2.763547e-03	k: 6555	n:2430000
Cons ci ratio: 1.362885e-01	ci left: 3.171325e-04	ci right 3.639071e-04	k: 826	n:2430000
KS ci ratio: 1.155607e-03	ci left: 8.251631e-01	ci right 8.261176e-01	k: 2006307	n:2430000
SFMBT2   2430000 perm   3256 sec   (746 perm/sec)   p_kst 8.256407e-01   p_cons 3.399177e-04   p_joint 2.697531e-03

Joint ci ratio: 4.844483e-02	ci left: 2.611387e-03	ci right 2.741437e-03	k: 6529	n:2440000
Cons ci ratio: 1.362063e-01	ci left: 3.162286e-04	ci right 3.628395e-04	k: 827	n:2440000
KS ci ratio: 1.153179e-03	ci left: 8.251783e-01	ci right 8.261308e-01	k: 2014598	n:2440000
SFMBT2   2440000 perm   3280 sec   (744 perm/sec)   p_kst 8.256549e-01   p_cons 3.389344e-04   p_joint 2.675820e-03

Joint ci ratio: 4.892445e-02	ci left: 2.549521e-03	ci right 2.677782e-03	k: 6402	n:2450000
Cons ci ratio: 1.361242e-01	ci left: 3.153321e-04	ci right 3.617806e-04	k: 828	n:2450000
KS ci ratio: 1.150820e-03	ci left: 8.251802e-01	ci right 8.261308e-01	k: 2022857	n:2450000
SFMBT2   2450000 perm   3305 sec   (741 perm/sec)   p_kst 8.256559e-01   p_cons 3.379592e-04   p_joint 2.613061e-03

Joint ci ratio: 4.882542e-02	ci left: 2.549597e-03	ci right 2.677595e-03	k: 6428	n:2460000
Cons ci ratio: 1.356341e-01	ci left: 3.164064e-04	ci right 3.628318e-04	k: 834	n:2460000
KS ci ratio: 1.148430e-03	ci left: 8.251932e-01	ci right 8.261418e-01	k: 2031143	n:2460000
SFMBT2   2460000 perm   3330 sec   (739 perm/sec)   p_kst 8.256679e-01   p_cons 3.390244e-04   p_joint 2.613008e-03

Joint ci ratio: 4.872321e-02	ci left: 2.550072e-03	ci right 2.677819e-03	k: 6455	n:2470000
Cons ci ratio: 1.353912e-01	ci left: 3.162988e-04	ci right 3.626186e-04	k: 837	n:2470000
KS ci ratio: 1.146164e-03	ci left: 8.251789e-01	ci right 8.261256e-01	k: 2039362	n:2470000
SFMBT2   2470000 perm   3354 sec   (736 perm/sec)   p_kst 8.256526e-01   p_cons 3.388664e-04   p_joint 2.613360e-03

Joint ci ratio: 4.767962e-02	ci left: 2.653327e-03	ci right 2.783322e-03	k: 6740	n:2480000
Cons ci ratio: 1.350692e-01	ci left: 3.165817e-04	ci right 3.628239e-04	k: 841	n:2480000
KS ci ratio: 1.143845e-03	ci left: 8.251812e-01	ci right 8.261261e-01	k: 2047622	n:2480000
SFMBT2   2480000 perm   3379 sec   (734 perm/sec)   p_kst 8.256540e-01   p_cons 3.391129e-04   p_joint 2.717742e-03

Joint ci ratio: 4.758442e-02	ci left: 2.653386e-03	ci right 2.783116e-03	k: 6767	n:2490000
Cons ci ratio: 1.348292e-01	ci left: 3.164745e-04	ci right 3.626122e-04	k: 844	n:2490000
KS ci ratio: 1.141531e-03	ci left: 8.251860e-01	ci right 8.261289e-01	k: 2055888	n:2490000
SFMBT2   2490000 perm   3404 sec   (732 perm/sec)   p_kst 8.256578e-01   p_cons 3.389558e-04   p_joint 2.717671e-03

Joint ci ratio: 4.772275e-02	ci left: 2.627357e-03	ci right 2.756199e-03	k: 6728	n:2500000
Cons ci ratio: 1.346699e-01	ci left: 3.159816e-04	ci right 3.619887e-04	k: 846	n:2500000
KS ci ratio: 1.139175e-03	ci left: 8.252047e-01	ci right 8.261457e-01	k: 2064189	n:2500000
SFMBT2   2500000 perm   3429 sec   (729 perm/sec)   p_kst 8.256756e-01   p_cons 3.384000e-04   p_joint 2.691200e-03

Joint ci ratio: 4.796302e-02	ci left: 2.590515e-03	ci right 2.718207e-03	k: 6661	n:2510000
Cons ci ratio: 1.344321e-01	ci left: 3.158777e-04	ci right 3.617820e-04	k: 849	n:2510000
KS ci ratio: 1.136900e-03	ci left: 8.252066e-01	ci right 8.261457e-01	k: 2072448	n:2510000
SFMBT2   2510000 perm   3453 sec   (727 perm/sec)   p_kst 8.256765e-01   p_cons 3.382470e-04   p_joint 2.653785e-03

Joint ci ratio: 4.786971e-02	ci left: 2.590429e-03	ci right 2.717861e-03	k: 6687	n:2520000
Cons ci ratio: 1.341169e-01	ci left: 3.161582e-04	ci right 3.619869e-04	k: 853	n:2520000
KS ci ratio: 1.134545e-03	ci left: 8.252322e-01	ci right 8.261694e-01	k: 2080767	n:2520000
SFMBT2   2520000 perm   3478 sec   (724 perm/sec)   p_kst 8.257012e-01   p_cons 3.384921e-04   p_joint 2.653571e-03

Joint ci ratio: 4.778407e-02	ci left: 2.589563e-03	ci right 2.716718e-03	k: 6711	n:2530000
Cons ci ratio: 1.341170e-01	ci left: 3.149086e-04	ci right 3.605562e-04	k: 853	n:2530000
KS ci ratio: 1.132369e-03	ci left: 8.252157e-01	ci right 8.261511e-01	k: 2088980	n:2530000
SFMBT2   2530000 perm   3504 sec   (722 perm/sec)   p_kst 8.256838e-01   p_cons 3.371542e-04   p_joint 2.652569e-03

Joint ci ratio: 4.770600e-02	ci left: 2.587925e-03	ci right 2.714788e-03	k: 6733	n:2540000
Cons ci ratio: 1.340386e-01	ci left: 3.140492e-04	ci right 3.595436e-04	k: 854	n:2540000
KS ci ratio: 1.130139e-03	ci left: 8.252163e-01	ci right 8.261498e-01	k: 2097236	n:2540000
SFMBT2   2540000 perm   3529 sec   (720 perm/sec)   p_kst 8.256835e-01   p_cons 3.362205e-04   p_joint 2.650787e-03

Joint ci ratio: 4.676181e-02	ci left: 2.683962e-03	ci right 2.812858e-03	k: 7007	n:2550000
Cons ci ratio: 1.338041e-01	ci left: 3.139547e-04	ci right 3.593494e-04	k: 857	n:2550000
KS ci ratio: 1.127861e-03	ci left: 8.252326e-01	ci right 8.261643e-01	k: 2105532	n:2550000
SFMBT2   2550000 perm   3554 sec   (717 perm/sec)   p_kst 8.256988e-01   p_cons 3.360784e-04   p_joint 2.747843e-03

Joint ci ratio: 4.666202e-02	ci left: 2.685059e-03	ci right 2.813726e-03	k: 7037	n:2560000
Cons ci ratio: 1.334158e-01	ci left: 3.146162e-04	ci right 3.599641e-04	k: 862	n:2560000
KS ci ratio: 1.125581e-03	ci left: 8.252527e-01	ci right 8.261825e-01	k: 2113838	n:2560000
SFMBT2   2560000 perm   3580 sec   (715 perm/sec)   p_kst 8.257180e-01   p_cons 3.367187e-04   p_joint 2.748828e-03

Joint ci ratio: 4.655956e-02	ci left: 2.686534e-03	ci right 2.814980e-03	k: 7068	n:2570000
Cons ci ratio: 1.331077e-01	ci left: 3.148965e-04	ci right 3.601717e-04	k: 866	n:2570000
KS ci ratio: 1.123401e-03	ci left: 8.252504e-01	ci right 8.261784e-01	k: 2122087	n:2570000
SFMBT2   2570000 perm   3605 sec   (713 perm/sec)   p_kst 8.257148e-01   p_cons 3.369650e-04   p_joint 2.750195e-03

Joint ci ratio: 4.579315e-02	ci left: 2.767306e-03	ci right 2.897379e-03	k: 7306	n:2580000
Cons ci ratio: 1.327255e-01	ci left: 3.155496e-04	ci right 3.607781e-04	k: 871	n:2580000
KS ci ratio: 1.121275e-03	ci left: 8.252377e-01	ci right 8.261639e-01	k: 2130309	n:2580000
SFMBT2   2580000 perm   3631 sec   (710 perm/sec)   p_kst 8.257012e-01   p_cons 3.375969e-04   p_joint 2.831783e-03

Joint ci ratio: 4.570255e-02	ci left: 2.767691e-03	ci right 2.897518e-03	k: 7335	n:2590000
Cons ci ratio: 1.324221e-01	ci left: 3.158244e-04	ci right 3.609807e-04	k: 875	n:2590000
KS ci ratio: 1.119075e-03	ci left: 8.252471e-01	ci right 8.261715e-01	k: 2138588	n:2590000
SFMBT2   2590000 perm   3657 sec   (708 perm/sec)   p_kst 8.257097e-01   p_cons 3.378378e-04   p_joint 2.832046e-03

Joint ci ratio: 4.588189e-02	ci left: 2.735372e-03	ci right 2.864200e-03	k: 7278	n:2600000
Cons ci ratio: 1.321959e-01	ci left: 3.157254e-04	ci right 3.607844e-04	k: 878	n:2600000
KS ci ratio: 1.116817e-03	ci left: 8.252749e-01	ci right 8.261975e-01	k: 2146915	n:2600000
SFMBT2   2600000 perm   3683 sec   (706 perm/sec)   p_kst 8.257365e-01   p_cons 3.376923e-04   p_joint 2.799231e-03

Joint ci ratio: 4.581277e-02	ci left: 2.733225e-03	ci right 2.861752e-03	k: 7300	n:2610000
Cons ci ratio: 1.321209e-01	ci left: 3.148861e-04	ci right 3.597979e-04	k: 879	n:2610000
KS ci ratio: 1.114631e-03	ci left: 8.252871e-01	ci right 8.262079e-01	k: 2155202	n:2610000
SFMBT2   2610000 perm   3709 sec   (704 perm/sec)   p_kst 8.257479e-01   p_cons 3.367816e-04   p_joint 2.796935e-03

Joint ci ratio: 4.580987e-02	ci left: 2.723169e-03	ci right 2.851216e-03	k: 7301	n:2620000
Cons ci ratio: 1.318962e-01	ci left: 3.147915e-04	ci right 3.596074e-04	k: 882	n:2620000
KS ci ratio: 1.112549e-03	ci left: 8.252760e-01	ci right 8.261950e-01	k: 2163428	n:2620000
SFMBT2   2620000 perm   3735 sec   (701 perm/sec)   p_kst 8.257359e-01   p_cons 3.366412e-04   p_joint 2.786641e-03

Joint ci ratio: 4.571603e-02	ci left: 2.724091e-03	ci right 2.851912e-03	k: 7331	n:2630000
Cons ci ratio: 1.315244e-01	ci left: 3.154331e-04	ci right 3.602038e-04	k: 887	n:2630000
KS ci ratio: 1.110451e-03	ci left: 8.252718e-01	ci right 8.261891e-01	k: 2171672	n:2630000
SFMBT2   2630000 perm   3762 sec   (699 perm/sec)   p_kst 8.257308e-01   p_cons 3.372624e-04   p_joint 2.787452e-03

Joint ci ratio: 4.566322e-02	ci left: 2.720139e-03	ci right 2.847623e-03	k: 7348	n:2640000
Cons ci ratio: 1.313765e-01	ci left: 3.149709e-04	ci right 3.596219e-04	k: 889	n:2640000
KS ci ratio: 1.108225e-03	ci left: 8.253040e-01	ci right 8.262195e-01	k: 2180012	n:2640000
SFMBT2   2640000 perm   3787 sec   (697 perm/sec)   p_kst 8.257621e-01   p_cons 3.367424e-04   p_joint 2.783333e-03

Joint ci ratio: 4.558577e-02	ci left: 2.719200e-03	ci right 2.846418e-03	k: 7373	n:2650000
Cons ci ratio: 1.312292e-01	ci left: 3.145123e-04	ci right 3.590443e-04	k: 891	n:2650000
KS ci ratio: 1.106114e-03	ci left: 8.253096e-01	ci right 8.262233e-01	k: 2188282	n:2650000
SFMBT2   2650000 perm   3814 sec   (695 perm/sec)   p_kst 8.257668e-01   p_cons 3.362264e-04   p_joint 2.782264e-03

Joint ci ratio: 4.550872e-02	ci left: 2.718269e-03	ci right 2.845223e-03	k: 7398	n:2660000
Cons ci ratio: 1.310091e-01	ci left: 3.144207e-04	ci right 3.588593e-04	k: 894	n:2660000
KS ci ratio: 1.104044e-03	ci left: 8.253075e-01	ci right 8.262196e-01	k: 2196532	n:2660000
SFMBT2   2660000 perm   3840 sec   (693 perm/sec)   p_kst 8.257639e-01   p_cons 3.360902e-04   p_joint 2.781203e-03

Joint ci ratio: 5.067722e-02	ci left: 2.179283e-03	ci right 2.292961e-03	k: 5969	n:2670000
Cons ci ratio: 1.498657e-01	ci left: 2.369802e-04	ci right 2.757277e-04	k: 683	n:2670000
KS ci ratio: 1.102014e-03	ci left: 8.252980e-01	ci right 8.262084e-01	k: 2204762	n:2670000
SFMBT2   2670000 perm   3866 sec   (691 perm/sec)   p_kst 8.257536e-01   p_cons 2.558052e-04   p_joint 2.235581e-03

Joint ci ratio: 5.061798e-02	ci left: 2.176309e-03	ci right 2.289696e-03	k: 5983	n:2680000
Cons ci ratio: 1.493209e-01	ci left: 2.378918e-04	ci right 2.766343e-04	k: 688	n:2680000
KS ci ratio: 1.099946e-03	ci left: 8.253017e-01	ci right 8.262103e-01	k: 2213027	n:2680000
SFMBT2   2680000 perm   3892 sec   (689 perm/sec)   p_kst 8.257563e-01   p_cons 2.567164e-04   p_joint 2.232463e-03

Joint ci ratio: 5.070318e-02	ci left: 2.160878e-03	ci right 2.273655e-03	k: 5963	n:2690000
Cons ci ratio: 1.489968e-01	ci left: 2.380811e-04	ci right 2.767627e-04	k: 691	n:2690000
KS ci ratio: 1.097855e-03	ci left: 8.253142e-01	ci right 8.262211e-01	k: 2221316	n:2690000
SFMBT2   2690000 perm   3919 sec   (686 perm/sec)   p_kst 8.257680e-01   p_cons 2.568773e-04   p_joint 2.216729e-03

Joint ci ratio: 5.058452e-02	ci left: 2.163114e-03	ci right 2.275736e-03	k: 5991	n:2700000
Cons ci ratio: 1.487820e-01	ci left: 2.379125e-04	ci right 2.765060e-04	k: 693	n:2700000
KS ci ratio: 1.095814e-03	ci left: 8.253167e-01	ci right 8.262219e-01	k: 2229578	n:2700000
SFMBT2   2700000 perm   3945 sec   (684 perm/sec)   p_kst 8.257696e-01   p_cons 2.566667e-04   p_joint 2.218889e-03

Joint ci ratio: 5.049192e-02	ci left: 2.163147e-03	ci right 2.275559e-03	k: 6013	n:2710000
Cons ci ratio: 1.486750e-01	ci left: 2.373898e-04	ci right 2.758684e-04	k: 694	n:2710000
KS ci ratio: 1.093756e-03	ci left: 8.253265e-01	ci right 8.262300e-01	k: 2237860	n:2710000
SFMBT2   2710000 perm   3972 sec   (682 perm/sec)   p_kst 8.257786e-01   p_cons 2.560886e-04   p_joint 2.218819e-03

Joint ci ratio: 5.039563e-02	ci left: 2.163544e-03	ci right 2.275755e-03	k: 6036	n:2720000
Cons ci ratio: 1.479317e-01	ci left: 2.389951e-04	ci right 2.775231e-04	k: 701	n:2720000
KS ci ratio: 1.091771e-03	ci left: 8.253200e-01	ci right 8.262219e-01	k: 2246098	n:2720000
SFMBT2   2720000 perm   3999 sec   (680 perm/sec)   p_kst 8.257713e-01   p_cons 2.577206e-04   p_joint 2.219118e-03

Joint ci ratio: 5.026666e-02	ci left: 2.166831e-03	ci right 2.278917e-03	k: 6067	n:2730000
Cons ci ratio: 1.475120e-01	ci left: 2.395307e-04	ci right 2.780259e-04	k: 705	n:2730000
KS ci ratio: 1.089765e-03	ci left: 8.253221e-01	ci right 8.262223e-01	k: 2254359	n:2730000
SFMBT2   2730000 perm   4026 sec   (678 perm/sec)   p_kst 8.257725e-01   p_cons 2.582418e-04   p_joint 2.222344e-03

Joint ci ratio: 5.016753e-02	ci left: 2.167572e-03	ci right 2.279469e-03	k: 6091	n:2740000
Cons ci ratio: 1.471996e-01	ci left: 2.397111e-04	ci right 2.781464e-04	k: 708	n:2740000
KS ci ratio: 1.087728e-03	ci left: 8.253354e-01	ci right 8.262340e-01	k: 2262651	n:2740000
SFMBT2   2740000 perm   4053 sec   (676 perm/sec)   p_kst 8.257850e-01   p_cons 2.583942e-04   p_joint 2.222993e-03

Joint ci ratio: 5.030863e-02	ci left: 2.147481e-03	ci right 2.258662e-03	k: 6057	n:2750000
Cons ci ratio: 1.469925e-01	ci left: 2.395399e-04	ci right 2.778890e-04	k: 710	n:2750000
KS ci ratio: 1.085683e-03	ci left: 8.253534e-01	ci right 8.262503e-01	k: 2270956	n:2750000
SFMBT2   2750000 perm   4080 sec   (674 perm/sec)   p_kst 8.258022e-01   p_cons 2.581818e-04   p_joint 2.202545e-03

Joint ci ratio: 5.037554e-02	ci left: 2.133976e-03	ci right 2.244609e-03	k: 6041	n:2760000
Cons ci ratio: 1.466833e-01	ci left: 2.397190e-04	ci right 2.780090e-04	k: 713	n:2760000
KS ci ratio: 1.083655e-03	ci left: 8.253702e-01	ci right 8.262654e-01	k: 2279258	n:2760000
SFMBT2   2760000 perm   4107 sec   (672 perm/sec)   p_kst 8.258181e-01   p_cons 2.583333e-04   p_joint 2.188768e-03

Joint ci ratio: 5.025502e-02	ci left: 2.136610e-03	ci right 2.247106e-03	k: 6070	n:2770000
Cons ci ratio: 1.464783e-01	ci left: 2.395491e-04	ci right 2.777538e-04	k: 715	n:2770000
KS ci ratio: 1.081593e-03	ci left: 8.253987e-01	ci right 8.262923e-01	k: 2287593	n:2770000
SFMBT2   2770000 perm   4134 sec   (670 perm/sec)   p_kst 8.258458e-01   p_cons 2.581227e-04   p_joint 2.191336e-03

Joint ci ratio: 5.016421e-02	ci left: 2.136739e-03	ci right 2.247036e-03	k: 6092	n:2780000
Cons ci ratio: 1.459695e-01	ci left: 2.404202e-04	ci right 2.786190e-04	k: 720	n:2780000
KS ci ratio: 1.079715e-03	ci left: 8.253810e-01	ci right 8.262730e-01	k: 2295800	n:2780000
SFMBT2   2780000 perm   4161 sec   (668 perm/sec)   p_kst 8.258273e-01   p_cons 2.589928e-04   p_joint 2.191367e-03

Joint ci ratio: 5.007389e-02	ci left: 2.136866e-03	ci right 2.246967e-03	k: 6114	n:2790000
Cons ci ratio: 1.455662e-01	ci left: 2.409399e-04	ci right 2.791063e-04	k: 724	n:2790000
KS ci ratio: 1.077753e-03	ci left: 8.253885e-01	ci right 8.262789e-01	k: 2304077	n:2790000
SFMBT2   2790000 perm   4189 sec   (666 perm/sec)   p_kst 8.258341e-01   p_cons 2.594982e-04   p_joint 2.191398e-03

Joint ci ratio: 4.998813e-02	ci left: 2.136641e-03	ci right 2.246535e-03	k: 6135	n:2800000
Cons ci ratio: 1.453659e-01	ci left: 2.407677e-04	ci right 2.788498e-04	k: 726	n:2800000
KS ci ratio: 1.075835e-03	ci left: 8.253870e-01	ci right 8.262758e-01	k: 2312329	n:2800000
SFMBT2   2800000 perm   4216 sec   (664 perm/sec)   p_kst 8.258318e-01   p_cons 2.592857e-04   p_joint 2.191071e-03

Joint ci ratio: 4.988253e-02	ci left: 2.138174e-03	ci right 2.247909e-03	k: 6161	n:2810000
Cons ci ratio: 1.449676e-01	ci left: 2.412827e-04	ci right 2.793326e-04	k: 730	n:2810000
KS ci ratio: 1.073952e-03	ci left: 8.253792e-01	ci right 8.262664e-01	k: 2320563	n:2810000
SFMBT2   2810000 perm   4244 sec   (662 perm/sec)   p_kst 8.258231e-01   p_cons 2.597865e-04   p_joint 2.192527e-03

Joint ci ratio: 4.946611e-02	ci left: 2.167014e-03	ci right 2.277274e-03	k: 6265	n:2820000
Cons ci ratio: 1.444742e-01	ci left: 2.421359e-04	ci right 2.801793e-04	k: 735	n:2820000
KS ci ratio: 1.071993e-03	ci left: 8.253941e-01	ci right 8.262797e-01	k: 2328861	n:2820000
SFMBT2   2820000 perm   4271 sec   (660 perm/sec)   p_kst 8.258372e-01   p_cons 2.606383e-04   p_joint 2.221631e-03

Joint ci ratio: 4.946235e-02	ci left: 2.159706e-03	ci right 2.269585e-03	k: 6266	n:2830000
Cons ci ratio: 1.439859e-01	ci left: 2.429833e-04	ci right 2.810197e-04	k: 740	n:2830000
KS ci ratio: 1.070194e-03	ci left: 8.253689e-01	ci right 8.262530e-01	k: 2337046	n:2830000
SFMBT2   2830000 perm   4299 sec   (658 perm/sec)   p_kst 8.258113e-01   p_cons 2.614841e-04   p_joint 2.214134e-03

Joint ci ratio: 4.933254e-02	ci left: 2.163578e-03	ci right 2.273357e-03	k: 6299	n:2840000
Cons ci ratio: 1.434064e-01	ci left: 2.441645e-04	ci right 2.822188e-04	k: 746	n:2840000
KS ci ratio: 1.068346e-03	ci left: 8.253594e-01	ci right 8.262420e-01	k: 2345275	n:2840000
SFMBT2   2840000 perm   4327 sec   (656 perm/sec)   p_kst 8.258011e-01   p_cons 2.626761e-04   p_joint 2.217958e-03

Joint ci ratio: 4.933273e-02	ci left: 2.155986e-03	ci right 2.265380e-03	k: 6299	n:2850000
Cons ci ratio: 1.434065e-01	ci left: 2.433078e-04	ci right 2.812285e-04	k: 746	n:2850000
KS ci ratio: 1.066539e-03	ci left: 8.253416e-01	ci right 8.262227e-01	k: 2353480	n:2850000
SFMBT2   2850000 perm   4355 sec   (654 perm/sec)   p_kst 8.257825e-01   p_cons 2.617544e-04   p_joint 2.210175e-03

Joint ci ratio: 4.923512e-02	ci left: 2.157081e-03	ci right 2.266308e-03	k: 6324	n:2860000
Cons ci ratio: 1.433106e-01	ci left: 2.427941e-04	ci right 2.806074e-04	k: 747	n:2860000
KS ci ratio: 1.064655e-03	ci left: 8.253473e-01	ci right 8.262268e-01	k: 2361752	n:2860000
SFMBT2   2860000 perm   4383 sec   (653 perm/sec)   p_kst 8.257874e-01   p_cons 2.611888e-04   p_joint 2.211189e-03

Joint ci ratio: 4.915359e-02	ci left: 2.156792e-03	ci right 2.265819e-03	k: 6345	n:2870000
Cons ci ratio: 1.431194e-01	ci left: 2.426201e-04	ci right 2.803515e-04	k: 749	n:2870000
KS ci ratio: 1.062771e-03	ci left: 8.253555e-01	ci right 8.262334e-01	k: 2370031	n:2870000
SFMBT2   2870000 perm   4411 sec   (651 perm/sec)   p_kst 8.257948e-01   p_cons 2.609756e-04   p_joint 2.210801e-03

Joint ci ratio: 4.909180e-02	ci left: 2.154791e-03	ci right 2.263575e-03	k: 6361	n:2880000
Cons ci ratio: 1.430242e-01	ci left: 2.421124e-04	ci right 2.797377e-04	k: 750	n:2880000
KS ci ratio: 1.060967e-03	ci left: 8.253448e-01	ci right 8.262212e-01	k: 2378256	n:2880000
SFMBT2   2880000 perm   4440 sec   (649 perm/sec)   p_kst 8.257833e-01   p_cons 2.604167e-04   p_joint 2.208681e-03

Joint ci ratio: 4.901483e-02	ci left: 2.154170e-03	ci right 2.262748e-03	k: 6381	n:2890000
Cons ci ratio: 1.426447e-01	ci left: 2.426093e-04	ci right 2.802033e-04	k: 754	n:2890000
KS ci ratio: 1.059114e-03	ci left: 8.253498e-01	ci right 8.262247e-01	k: 2386526	n:2890000
SFMBT2   2890000 perm   4468 sec   (647 perm/sec)   p_kst 8.257875e-01   p_cons 2.608997e-04   p_joint 2.207958e-03

Joint ci ratio: 4.892291e-02	ci left: 2.154917e-03	ci right 2.263323e-03	k: 6405	n:2900000
Cons ci ratio: 1.422683e-01	ci left: 2.431029e-04	ci right 2.806655e-04	k: 758	n:2900000
KS ci ratio: 1.057227e-03	ci left: 8.253668e-01	ci right 8.262402e-01	k: 2394831	n:2900000
SFMBT2   2900000 perm   4496 sec   (645 perm/sec)   p_kst 8.258038e-01   p_cons 2.613793e-04   p_joint 2.208621e-03

Joint ci ratio: 4.739415e-02	ci left: 2.289768e-03	ci right 2.401260e-03	k: 6824	n:2910000
Cons ci ratio: 1.419880e-01	ci left: 2.432617e-04	ci right 2.807686e-04	k: 761	n:2910000
KS ci ratio: 1.055381e-03	ci left: 8.253751e-01	ci right 8.262470e-01	k: 2403111	n:2910000
SFMBT2   2910000 perm   4525 sec   (643 perm/sec)   p_kst 8.258113e-01   p_cons 2.615120e-04   p_joint 2.345017e-03

Joint ci ratio: 4.731796e-02	ci left: 2.289371e-03	ci right 2.400660e-03	k: 6846	n:2920000
Cons ci ratio: 1.416168e-01	ci left: 2.437499e-04	ci right 2.812254e-04	k: 765	n:2920000
KS ci ratio: 1.053489e-03	ci left: 8.253984e-01	ci right 8.262687e-01	k: 2411435	n:2920000
SFMBT2   2920000 perm   4553 sec   (641 perm/sec)   p_kst 8.258339e-01   p_cons 2.619863e-04   p_joint 2.344521e-03

Joint ci ratio: 4.725248e-02	ci left: 2.287966e-03	ci right 2.399028e-03	k: 6865	n:2930000
Cons ci ratio: 1.414323e-01	ci left: 2.435764e-04	ci right 2.809724e-04	k: 767	n:2930000
KS ci ratio: 1.051738e-03	ci left: 8.253861e-01	ci right 8.262549e-01	k: 2419655	n:2930000
SFMBT2   2930000 perm   4581 sec   (640 perm/sec)   p_kst 8.258208e-01   p_cons 2.617747e-04   p_joint 2.343003e-03

Joint ci ratio: 4.718384e-02	ci left: 2.286906e-03	ci right 2.397751e-03	k: 6885	n:2940000
Cons ci ratio: 1.410653e-01	ci left: 2.440604e-04	ci right 2.814253e-04	k: 771	n:2940000
KS ci ratio: 1.050005e-03	ci left: 8.253711e-01	ci right 8.262385e-01	k: 2427867	n:2940000
SFMBT2   2940000 perm   4610 sec   (638 perm/sec)   p_kst 8.258051e-01   p_cons 2.622449e-04   p_joint 2.341837e-03

Joint ci ratio: 4.711208e-02	ci left: 2.286188e-03	ci right 2.396826e-03	k: 6906	n:2950000
Cons ci ratio: 1.407920e-01	ci left: 2.442142e-04	ci right 2.815241e-04	k: 774	n:2950000
KS ci ratio: 1.048129e-03	ci left: 8.253979e-01	ci right 8.262638e-01	k: 2436202	n:2950000
SFMBT2   2950000 perm   4639 sec   (636 perm/sec)   p_kst 8.258312e-01   p_cons 2.623729e-04   p_joint 2.341017e-03

Joint ci ratio: 4.701684e-02	ci left: 2.287813e-03	ci right 2.398299e-03	k: 6934	n:2960000
Cons ci ratio: 1.403400e-01	ci left: 2.450189e-04	ci right 2.823215e-04	k: 779	n:2960000
KS ci ratio: 1.046365e-03	ci left: 8.253965e-01	ci right 8.262610e-01	k: 2444454	n:2960000
SFMBT2   2960000 perm   4668 sec   (634 perm/sec)   p_kst 8.258291e-01   p_cons 2.631757e-04   p_joint 2.342568e-03

Joint ci ratio: 4.695260e-02	ci left: 2.286432e-03	ci right 2.396697e-03	k: 6953	n:2970000
Cons ci ratio: 1.401604e-01	ci left: 2.448437e-04	ci right 2.820680e-04	k: 781	n:2970000
KS ci ratio: 1.044493e-03	ci left: 8.254271e-01	ci right 8.262901e-01	k: 2452801	n:2970000
SFMBT2   2970000 perm   4697 sec   (632 perm/sec)   p_kst 8.258589e-01   p_cons 2.629630e-04   p_joint 2.341077e-03

Joint ci ratio: 4.686505e-02	ci left: 2.287382e-03	ci right 2.397481e-03	k: 6979	n:2980000
Cons ci ratio: 1.400709e-01	ci left: 2.443459e-04	ci right 2.814688e-04	k: 782	n:2980000
KS ci ratio: 1.042680e-03	ci left: 8.254441e-01	ci right 8.263056e-01	k: 2461108	n:2980000
SFMBT2   2980000 perm   4727 sec   (630 perm/sec)   p_kst 8.258752e-01   p_cons 2.624161e-04   p_joint 2.341946e-03

Joint ci ratio: 3.908735e-02	ci left: 3.286972e-03	ci right 3.418340e-03	k: 10023	n:2990000
Cons ci ratio: 1.279043e-01	ci left: 2.939578e-04	ci right 3.344450e-04	k: 938	n:2990000
KS ci ratio: 1.040887e-03	ci left: 8.254583e-01	ci right 8.263183e-01	k: 2469407	n:2990000
SFMBT2   2990000 perm   4756 sec   (629 perm/sec)   p_kst 8.258886e-01   p_cons 3.137124e-04   p_joint 3.352174e-03

Joint ci ratio: 3.865090e-02	ci left: 3.350949e-03	ci right 3.483346e-03	k: 10250	n:3000000
Cons ci ratio: 1.274975e-01	ci left: 2.949141e-04	ci right 3.353940e-04	k: 944	n:3000000
KS ci ratio: 1.039531e-03	ci left: 8.253536e-01	ci right 8.262124e-01	k: 2477350	n:3000000
SFMBT2   3000000 perm   4786 sec   (627 perm/sec)   p_kst 8.257833e-01   p_cons 3.146667e-04   p_joint 3.416667e-03

Joint ci ratio: 3.860957e-02	ci left: 3.347055e-03	ci right 3.479153e-03	k: 10272	n:3010000
Cons ci ratio: 1.272956e-01	ci left: 2.948992e-04	ci right 3.353082e-04	k: 947	n:3010000
KS ci ratio: 1.037784e-03	ci left: 8.253594e-01	ci right 8.262167e-01	k: 2485623	n:3010000
SFMBT2   3010000 perm   4816 sec   (625 perm/sec)   p_kst 8.257884e-01   p_cons 3.146179e-04   p_joint 3.412625e-03

Joint ci ratio: 3.854396e-02	ci left: 3.347449e-03	ci right 3.479334e-03	k: 10307	n:3020000
Cons ci ratio: 1.270947e-01	ci left: 2.948845e-04	ci right 3.352228e-04	k: 950	n:3020000
KS ci ratio: 1.036104e-03	ci left: 8.253492e-01	ci right 8.262051e-01	k: 2493848	n:3020000
SFMBT2   3020000 perm   4846 sec   (623 perm/sec)   p_kst 8.257775e-01   p_cons 3.145695e-04   p_joint 3.412914e-03

Joint ci ratio: 3.848615e-02	ci left: 3.346534e-03	ci right 3.478180e-03	k: 10338	n:3030000
Cons ci ratio: 1.270279e-01	ci left: 2.942308e-04	ci right 3.344570e-04	k: 951	n:3030000
KS ci ratio: 1.034417e-03	ci left: 8.253431e-01	ci right 8.261976e-01	k: 2502085	n:3030000
SFMBT2   3030000 perm   4876 sec   (621 perm/sec)   p_kst 8.257706e-01   p_cons 3.138614e-04   p_joint 3.411881e-03

Joint ci ratio: 3.842861e-02	ci left: 3.345625e-03	ci right 3.477034e-03	k: 10369	n:3040000
Cons ci ratio: 1.266956e-01	ci left: 2.948555e-04	ci right 3.350537e-04	k: 956	n:3040000
KS ci ratio: 1.032721e-03	ci left: 8.253419e-01	ci right 8.261950e-01	k: 2510337	n:3040000
SFMBT2   3040000 perm   4906 sec   (620 perm/sec)   p_kst 8.257688e-01   p_cons 3.144737e-04   p_joint 3.410855e-03

Joint ci ratio: 3.837317e-02	ci left: 3.344397e-03	ci right 3.475565e-03	k: 10399	n:3050000
Cons ci ratio: 1.264317e-01	ci left: 2.951587e-04	ci right 3.353082e-04	k: 960	n:3050000
KS ci ratio: 1.030996e-03	ci left: 8.253512e-01	ci right 8.262029e-01	k: 2518621	n:3050000
SFMBT2   3050000 perm   4936 sec   (618 perm/sec)   p_kst 8.257774e-01   p_cons 3.147541e-04   p_joint 3.409508e-03

Joint ci ratio: 3.845695e-02	ci left: 3.318902e-03	ci right 3.449360e-03	k: 10354	n:3060000
Cons ci ratio: 1.263003e-01	ci left: 2.948271e-04	ci right 3.348866e-04	k: 962	n:3060000
KS ci ratio: 1.029258e-03	ci left: 8.253664e-01	ci right 8.262167e-01	k: 2526923	n:3060000
SFMBT2   3060000 perm   4966 sec   (616 perm/sec)   p_kst 8.257918e-01   p_cons 3.143791e-04   p_joint 3.383660e-03

Joint ci ratio: 3.998753e-02	ci left: 3.058115e-03	ci right 3.183216e-03	k: 9579	n:3070000
Cons ci ratio: 1.261694e-01	ci left: 2.944976e-04	ci right 3.344678e-04	k: 964	n:3070000
KS ci ratio: 1.043510e-03	ci left: 8.208925e-01	ci right 8.217499e-01	k: 2521457	n:3070000
SFMBT2   3070000 perm   4996 sec   (614 perm/sec)   p_kst 8.213215e-01   p_cons 3.140065e-04   p_joint 3.120195e-03

Joint ci ratio: 4.030979e-02	ci left: 2.999329e-03	ci right 3.123037e-03	k: 9427	n:3080000
Cons ci ratio: 1.258438e-01	ci left: 2.951137e-04	ci right 3.350564e-04	k: 969	n:3080000
KS ci ratio: 1.041799e-03	ci left: 8.208977e-01	ci right 8.217537e-01	k: 2529684	n:3080000
SFMBT2   3080000 perm   5027 sec   (613 perm/sec)   p_kst 8.213260e-01   p_cons 3.146104e-04   p_joint 3.060714e-03

Joint ci ratio: 4.024794e-02	ci left: 2.998913e-03	ci right 3.122410e-03	k: 9456	n:3090000
Cons ci ratio: 1.256496e-01	ci left: 2.950989e-04	ci right 3.349735e-04	k: 972	n:3090000
KS ci ratio: 1.040076e-03	ci left: 8.209083e-01	ci right 8.217629e-01	k: 2537928	n:3090000
SFMBT2   3090000 perm   5057 sec   (611 perm/sec)   p_kst 8.213359e-01   p_cons 3.145631e-04   p_joint 3.060194e-03

Joint ci ratio: 4.025455e-02	ci left: 2.988281e-03	ci right 3.111360e-03	k: 9453	n:3100000
Cons ci ratio: 1.253921e-01	ci left: 2.953968e-04	ci right 3.352237e-04	k: 976	n:3100000
KS ci ratio: 1.038351e-03	ci left: 8.209222e-01	ci right 8.217753e-01	k: 2546182	n:3100000
SFMBT2   3100000 perm   5087 sec   (609 perm/sec)   p_kst 8.213490e-01   p_cons 3.148387e-04   p_joint 3.049355e-03

Joint ci ratio: 4.052218e-02	ci left: 2.939202e-03	ci right 3.061083e-03	k: 9329	n:3110000
Cons ci ratio: 1.253280e-01	ci left: 2.947584e-04	ci right 3.344775e-04	k: 977	n:3110000
KS ci ratio: 1.036668e-03	ci left: 8.209262e-01	ci right 8.217780e-01	k: 2554406	n:3110000
SFMBT2   3110000 perm   5117 sec   (608 perm/sec)   p_kst 8.213524e-01   p_cons 3.141479e-04   p_joint 2.999678e-03

Joint ci ratio: 4.045718e-02	ci left: 2.939299e-03	ci right 3.060985e-03	k: 9359	n:3120000
Cons ci ratio: 1.251363e-01	ci left: 2.947451e-04	ci right 3.343971e-04	k: 980	n:3120000
KS ci ratio: 1.035019e-03	ci left: 8.209232e-01	ci right 8.217736e-01	k: 2562608	n:3120000
SFMBT2   3120000 perm   5148 sec   (606 perm/sec)   p_kst 8.213487e-01   p_cons 3.141026e-04   p_joint 2.999679e-03

Joint ci ratio: 4.053782e-02	ci left: 2.918207e-03	ci right 3.039265e-03	k: 9322	n:3130000
Cons ci ratio: 1.250089e-01	ci left: 2.944224e-04	ci right 3.339877e-04	k: 982	n:3130000
KS ci ratio: 1.033289e-03	ci left: 8.209452e-01	ci right 8.217942e-01	k: 2570888	n:3130000
SFMBT2   3130000 perm   5179 sec   (604 perm/sec)   p_kst 8.213700e-01   p_cons 3.137380e-04   p_joint 2.978275e-03

Joint ci ratio: 4.060359e-02	ci left: 2.899455e-03	ci right 3.019936e-03	k: 9292	n:3140000
Cons ci ratio: 1.246291e-01	ci left: 2.953359e-04	ci right 3.348945e-04	k: 988	n:3140000
KS ci ratio: 1.031564e-03	ci left: 8.209682e-01	ci right 8.218159e-01	k: 2579172	n:3140000
SFMBT2   3140000 perm   5209 sec   (603 perm/sec)   p_kst 8.213924e-01   p_cons 3.146497e-04   p_joint 2.959236e-03

Joint ci ratio: 4.087822e-02	ci left: 2.851285e-03	ci right 2.970584e-03	k: 9168	n:3150000
Cons ci ratio: 1.245033e-01	ci left: 2.950135e-04	ci right 3.344860e-04	k: 990	n:3150000
KS ci ratio: 1.029942e-03	ci left: 8.209642e-01	ci right 8.218105e-01	k: 2587371	n:3150000
SFMBT2   3150000 perm   5240 sec   (601 perm/sec)   p_kst 8.213876e-01   p_cons 3.142857e-04   p_joint 2.910476e-03

Joint ci ratio: 4.081596e-02	ci left: 2.851032e-03	ci right 2.970135e-03	k: 9196	n:3160000
Cons ci ratio: 1.241904e-01	ci left: 2.956130e-04	ci right 3.350590e-04	k: 995	n:3160000
KS ci ratio: 1.028289e-03	ci left: 8.209709e-01	ci right 8.218158e-01	k: 2595604	n:3160000
SFMBT2   3160000 perm   5271 sec   (599 perm/sec)   p_kst 8.213937e-01   p_cons 3.148734e-04   p_joint 2.910127e-03

Joint ci ratio: 4.003564e-02	ci left: 2.954771e-03	ci right 3.075793e-03	k: 9557	n:3170000
Cons ci ratio: 1.238798e-01	ci left: 2.962088e-04	ci right 3.356282e-04	k: 1000	n:3170000
KS ci ratio: 1.026682e-03	ci left: 8.209672e-01	ci right 8.218108e-01	k: 2603804	n:3170000
SFMBT2   3170000 perm   5302 sec   (598 perm/sec)   p_kst 8.213893e-01   p_cons 3.154574e-04   p_joint 3.014826e-03

Joint ci ratio: 3.998132e-02	ci left: 2.953573e-03	ci right 3.074378e-03	k: 9583	n:3180000
Cons ci ratio: 1.237562e-01	ci left: 2.958868e-04	ci right 3.352212e-04	k: 1002	n:3180000
KS ci ratio: 1.025111e-03	ci left: 8.209550e-01	ci right 8.217973e-01	k: 2611977	n:3180000
SFMBT2   3180000 perm   5333 sec   (596 perm/sec)   p_kst 8.213764e-01   p_cons 3.150943e-04   p_joint 3.013522e-03

Joint ci ratio: 3.991681e-02	ci left: 2.953935e-03	ci right 3.074556e-03	k: 9614	n:3190000
Cons ci ratio: 1.235102e-01	ci left: 2.961744e-04	ci right 3.354630e-04	k: 1006	n:3190000
KS ci ratio: 1.023537e-03	ci left: 8.209460e-01	ci right 8.217870e-01	k: 2620160	n:3190000
SFMBT2   3190000 perm   5364 sec   (595 perm/sec)   p_kst 8.213668e-01   p_cons 3.153605e-04   p_joint 3.013793e-03

Joint ci ratio: 4.018831e-02	ci left: 2.904794e-03	ci right 3.024233e-03	k: 9485	n:3200000
Cons ci ratio: 1.231438e-01	ci left: 2.970660e-04	ci right 3.363475e-04	k: 1012	n:3200000
KS ci ratio: 1.021938e-03	ci left: 8.209461e-01	ci right 8.217858e-01	k: 2628372	n:3200000
SFMBT2   3200000 perm   5395 sec   (593 perm/sec)   p_kst 8.213662e-01   p_cons 3.162500e-04   p_joint 2.964063e-03

Joint ci ratio: 4.019275e-02	ci left: 2.895128e-03	ci right 3.014183e-03	k: 9483	n:3210000
Cons ci ratio: 1.230224e-01	ci left: 2.967444e-04	ci right 3.359419e-04	k: 1014	n:3210000
KS ci ratio: 1.020323e-03	ci left: 8.209531e-01	ci right 8.217915e-01	k: 2636606	n:3210000
SFMBT2   3210000 perm   5427 sec   (592 perm/sec)   p_kst 8.213726e-01   p_cons 3.158879e-04   p_joint 2.954206e-03

Joint ci ratio: 4.012510e-02	ci left: 2.895975e-03	ci right 3.014860e-03	k: 9515	n:3220000
Cons ci ratio: 1.228410e-01	ci left: 2.967259e-04	ci right 3.358589e-04	k: 1017	n:3220000
KS ci ratio: 1.018740e-03	ci left: 8.209529e-01	ci right 8.217900e-01	k: 2644817	n:3220000
SFMBT2   3220000 perm   5457 sec   (590 perm/sec)   p_kst 8.213717e-01   p_cons 3.158385e-04   p_joint 2.954969e-03

Joint ci ratio: 4.007252e-02	ci left: 2.894671e-03	ci right 3.013343e-03	k: 9540	n:3230000
Cons ci ratio: 1.227206e-01	ci left: 2.964074e-04	ci right 3.354573e-04	k: 1019	n:3230000
KS ci ratio: 1.017179e-03	ci left: 8.209487e-01	ci right 8.217845e-01	k: 2653015	n:3230000
SFMBT2   3230000 perm   5489 sec   (588 perm/sec)   p_kst 8.213669e-01   p_cons 3.154799e-04   p_joint 2.953560e-03

Joint ci ratio: 4.000128e-02	ci left: 2.896126e-03	ci right 3.014642e-03	k: 9574	n:3240000
Cons ci ratio: 1.221232e-01	ci left: 2.984845e-04	ci right 3.376028e-04	k: 1029	n:3240000
KS ci ratio: 1.015640e-03	ci left: 8.209402e-01	ci right 8.217747e-01	k: 2661199	n:3240000
SFMBT2   3240000 perm   5521 sec   (587 perm/sec)   p_kst 8.213577e-01   p_cons 3.175926e-04   p_joint 2.954938e-03

Joint ci ratio: 3.993042e-02	ci left: 2.897572e-03	ci right 3.015932e-03	k: 9608	n:3250000
Cons ci ratio: 1.217690e-01	ci left: 2.993559e-04	ci right 3.384665e-04	k: 1035	n:3250000
KS ci ratio: 1.014131e-03	ci left: 8.209249e-01	ci right 8.217582e-01	k: 2669361	n:3250000
SFMBT2   3250000 perm   5553 sec   (585 perm/sec)   p_kst 8.213418e-01   p_cons 3.184615e-04   p_joint 2.956308e-03

Joint ci ratio: 4.004361e-02	ci left: 2.872284e-03	ci right 2.989951e-03	k: 9554	n:3260000
Cons ci ratio: 1.217691e-01	ci left: 2.984376e-04	ci right 3.374282e-04	k: 1035	n:3260000
KS ci ratio: 1.012545e-03	ci left: 8.209340e-01	ci right 8.217660e-01	k: 2677602	n:3260000
SFMBT2   3260000 perm   5584 sec   (584 perm/sec)   p_kst 8.213503e-01   p_cons 3.174847e-04   p_joint 2.930675e-03

Joint ci ratio: 3.996208e-02	ci left: 2.875308e-03	ci right 2.992854e-03	k: 9593	n:3270000
Cons ci ratio: 1.215932e-01	ci left: 2.984145e-04	ci right 3.373417e-04	k: 1038	n:3270000
KS ci ratio: 1.010988e-03	ci left: 8.209370e-01	ci right 8.217676e-01	k: 2685823	n:3270000
SFMBT2   3270000 perm   5616 sec   (582 perm/sec)   p_kst 8.213526e-01   p_cons 3.174312e-04   p_joint 2.933639e-03

Joint ci ratio: 3.991014e-02	ci left: 2.874087e-03	ci right 2.991427e-03	k: 9618	n:3280000
Cons ci ratio: 1.214763e-01	ci left: 2.980959e-04	ci right 3.369415e-04	k: 1040	n:3280000
KS ci ratio: 1.009430e-03	ci left: 8.209420e-01	ci right 8.217714e-01	k: 2694051	n:3280000
SFMBT2   3280000 perm   5648 sec   (581 perm/sec)   p_kst 8.213570e-01   p_cons 3.170732e-04   p_joint 2.932317e-03

Joint ci ratio: 3.991032e-02	ci left: 2.865351e-03	ci right 2.982335e-03	k: 9618	n:3290000
Cons ci ratio: 1.212436e-01	ci left: 2.983688e-04	ci right 3.371700e-04	k: 1044	n:3290000
KS ci ratio: 1.007884e-03	ci left: 8.209458e-01	ci right 8.217740e-01	k: 2702275	n:3290000
SFMBT2   3290000 perm   5681 sec   (579 perm/sec)   p_kst 8.213602e-01   p_cons 3.173252e-04   p_joint 2.923404e-03

Joint ci ratio: 3.984201e-02	ci left: 2.866569e-03	ci right 2.983397e-03	k: 9651	n:3300000
Cons ci ratio: 1.210122e-01	ci left: 2.986400e-04	ci right 3.373971e-04	k: 1048	n:3300000
KS ci ratio: 1.006336e-03	ci left: 8.209523e-01	ci right 8.217792e-01	k: 2710508	n:3300000
SFMBT2   3300000 perm   5713 sec   (578 perm/sec)   p_kst 8.213661e-01   p_cons 3.175758e-04   p_joint 2.924545e-03

Joint ci ratio: 3.979054e-02	ci left: 2.865386e-03	ci right 2.982012e-03	k: 9676	n:3310000
Cons ci ratio: 1.207821e-01	ci left: 2.989097e-04	ci right 3.376228e-04	k: 1052	n:3310000
KS ci ratio: 1.004884e-03	ci left: 8.209325e-01	ci right 8.217582e-01	k: 2718654	n:3310000
SFMBT2   3310000 perm   5746 sec   (576 perm/sec)   p_kst 8.213456e-01   p_cons 3.178248e-04   p_joint 2.923263e-03

Joint ci ratio: 3.974338e-02	ci left: 2.863614e-03	ci right 2.980027e-03	k: 9699	n:3320000
Cons ci ratio: 1.207249e-01	ci left: 2.983015e-04	ci right 3.369162e-04	k: 1053	n:3320000
KS ci ratio: 1.003303e-03	ci left: 8.209526e-01	ci right 8.217770e-01	k: 2726932	n:3320000
SFMBT2   3320000 perm   5778 sec   (575 perm/sec)   p_kst 8.213651e-01   p_cons 3.171687e-04   p_joint 2.921386e-03

Joint ci ratio: 3.968615e-02	ci left: 2.863339e-03	ci right 2.979570e-03	k: 9727	n:3330000
Cons ci ratio: 1.207249e-01	ci left: 2.974056e-04	ci right 3.359044e-04	k: 1053	n:3330000
KS ci ratio: 1.001795e-03	ci left: 8.209533e-01	ci right 8.217764e-01	k: 2735146	n:3330000
SFMBT2   3330000 perm   5811 sec   (573 perm/sec)   p_kst 8.213652e-01   p_cons 3.162162e-04   p_joint 2.921021e-03

Joint ci ratio: 3.962305e-02	ci left: 2.863956e-03	ci right 2.980022e-03	k: 9758	n:3340000
Cons ci ratio: 1.206106e-01	ci left: 2.970959e-04	ci right 3.355156e-04	k: 1055	n:3340000
KS ci ratio: 1.000247e-03	ci left: 8.209678e-01	ci right 8.217897e-01	k: 2743406	n:3340000
SFMBT2   3340000 perm   5843 sec   (572 perm/sec)   p_kst 8.213790e-01   p_cons 3.158683e-04   p_joint 2.921557e-03

Joint ci ratio: 3.955621e-02	ci left: 2.865160e-03	ci right 2.981075e-03	k: 9791	n:3350000
Cons ci ratio: 1.204396e-01	ci left: 2.970776e-04	ci right 3.354366e-04	k: 1058	n:3350000
KS ci ratio: 9.987570e-04	ci left: 8.209673e-01	ci right 8.217880e-01	k: 2751616	n:3350000
SFMBT2   3350000 perm   5876 sec   (570 perm/sec)   p_kst 8.213779e-01   p_cons 3.158209e-04   p_joint 2.922687e-03

Joint ci ratio: 3.957462e-02	ci left: 2.853981e-03	ci right 2.969498e-03	k: 9782	n:3360000
Cons ci ratio: 1.202128e-01	ci left: 2.973481e-04	ci right 3.356645e-04	k: 1062	n:3360000
KS ci ratio: 9.973058e-04	ci left: 8.209573e-01	ci right 8.217767e-01	k: 2759794	n:3360000
SFMBT2   3360000 perm   5909 sec   (569 perm/sec)   p_kst 8.213673e-01   p_cons 3.160714e-04   p_joint 2.911310e-03

Joint ci ratio: 3.959103e-02	ci left: 2.843161e-03	ci right 2.958289e-03	k: 9774	n:3370000
Cons ci ratio: 1.200999e-01	ci left: 2.970414e-04	ci right 3.352798e-04	k: 1064	n:3370000
KS ci ratio: 9.958166e-04	ci left: 8.209603e-01	ci right 8.217786e-01	k: 2768016	n:3370000
SFMBT2   3370000 perm   5942 sec   (567 perm/sec)   p_kst 8.213697e-01   p_cons 3.157270e-04   p_joint 2.900297e-03

Joint ci ratio: 3.952637e-02	ci left: 2.844123e-03	ci right 2.959098e-03	k: 9806	n:3380000
Cons ci ratio: 1.197629e-01	ci left: 2.978845e-04	ci right 3.361162e-04	k: 1070	n:3380000
KS ci ratio: 9.944073e-04	ci left: 8.209418e-01	ci right 8.217588e-01	k: 2776165	n:3380000
SFMBT2   3380000 perm   5974 sec   (566 perm/sec)   p_kst 8.213506e-01   p_cons 3.165680e-04   p_joint 2.901183e-03

Joint ci ratio: 3.947812e-02	ci left: 2.842743e-03	ci right 2.957519e-03	k: 9830	n:3390000
Cons ci ratio: 1.196513e-01	ci left: 2.975781e-04	ci right 3.357323e-04	k: 1072	n:3390000
KS ci ratio: 9.929251e-04	ci left: 8.209467e-01	ci right 8.217625e-01	k: 2784393	n:3390000
SFMBT2   3390000 perm   6007 sec   (564 perm/sec)   p_kst 8.213549e-01   p_cons 3.162242e-04   p_joint 2.899705e-03

Joint ci ratio: 3.953682e-02	ci left: 2.825936e-03	ci right 2.940207e-03	k: 9801	n:3400000
Cons ci ratio: 1.193735e-01	ci left: 2.981295e-04	ci right 3.362594e-04	k: 1077	n:3400000
KS ci ratio: 9.914515e-04	ci left: 8.209509e-01	ci right 8.217656e-01	k: 2792619	n:3400000
SFMBT2   3400000 perm   6039 sec   (563 perm/sec)   p_kst 8.213585e-01   p_cons 3.167647e-04   p_joint 2.882647e-03

Joint ci ratio: 3.948048e-02	ci left: 2.825779e-03	ci right 2.939877e-03	k: 9829	n:3410000
Cons ci ratio: 1.192077e-01	ci left: 2.981087e-04	ci right 3.361793e-04	k: 1080	n:3410000
KS ci ratio: 9.900131e-04	ci left: 8.209467e-01	ci right 8.217601e-01	k: 2800816	n:3410000
SFMBT2   3410000 perm   6073 sec   (562 perm/sec)   p_kst 8.213537e-01   p_cons 3.167155e-04   p_joint 2.882405e-03

Joint ci ratio: 3.944042e-02	ci left: 2.823307e-03	ci right 2.937186e-03	k: 9849	n:3420000
Cons ci ratio: 1.190426e-01	ci left: 2.980881e-04	ci right 3.360997e-04	k: 1083	n:3420000
KS ci ratio: 9.885632e-04	ci left: 8.209477e-01	ci right 8.217599e-01	k: 2809031	n:3420000
SFMBT2   3420000 perm   6106 sec   (560 perm/sec)   p_kst 8.213541e-01   p_cons 3.166667e-04   p_joint 2.879825e-03

Joint ci ratio: 3.938049e-02	ci left: 2.823736e-03	ci right 2.937456e-03	k: 9879	n:3430000
Cons ci ratio: 1.188783e-01	ci left: 2.980676e-04	ci right 3.360204e-04	k: 1086	n:3430000
KS ci ratio: 9.870892e-04	ci left: 8.209578e-01	ci right 8.217688e-01	k: 2817277	n:3430000
SFMBT2   3430000 perm   6139 sec   (559 perm/sec)   p_kst 8.213636e-01   p_cons 3.166181e-04   p_joint 2.880175e-03

Joint ci ratio: 3.947091e-02	ci left: 2.802574e-03	ci right 2.915707e-03	k: 9834	n:3440000
Cons ci ratio: 1.187145e-01	ci left: 2.980473e-04	ci right 3.359416e-04	k: 1089	n:3440000
KS ci ratio: 9.856277e-04	ci left: 8.209660e-01	ci right 8.217759e-01	k: 2825517	n:3440000
SFMBT2   3440000 perm   6172 sec   (557 perm/sec)   p_kst 8.213712e-01   p_cons 3.165698e-04   p_joint 2.858721e-03

Joint ci ratio: 3.941685e-02	ci left: 2.802200e-03	ci right 2.915159e-03	k: 9861	n:3450000
Cons ci ratio: 1.186058e-01	ci left: 2.977459e-04	ci right 3.355648e-04	k: 1091	n:3450000
KS ci ratio: 9.841746e-04	ci left: 8.209737e-01	ci right 8.217823e-01	k: 2833755	n:3450000
SFMBT2   3450000 perm   6206 sec   (556 perm/sec)   p_kst 8.213783e-01   p_cons 3.162319e-04   p_joint 2.858261e-03

Joint ci ratio: 3.936501e-02	ci left: 2.801541e-03	ci right 2.914322e-03	k: 9887	n:3460000
Cons ci ratio: 1.184974e-01	ci left: 2.974463e-04	ci right 3.351901e-04	k: 1093	n:3460000
KS ci ratio: 9.826873e-04	ci left: 8.209934e-01	ci right 8.218009e-01	k: 2842035	n:3460000
SFMBT2   3460000 perm   6238 sec   (555 perm/sec)   p_kst 8.213974e-01   p_cons 3.158960e-04   p_joint 2.857514e-03

Joint ci ratio: 3.940315e-02	ci left: 2.788046e-03	ci right 2.900394e-03	k: 9868	n:3470000
Cons ci ratio: 1.182813e-01	ci left: 2.977077e-04	ci right 3.354110e-04	k: 1097	n:3470000
KS ci ratio: 9.813454e-04	ci left: 8.209715e-01	ci right 8.217778e-01	k: 2850171	n:3470000
SFMBT2   3470000 perm   6272 sec   (553 perm/sec)   p_kst 8.213749e-01   p_cons 3.161383e-04   p_joint 2.843804e-03

Joint ci ratio: 3.934538e-02	ci left: 2.788286e-03	ci right 2.900475e-03	k: 9897	n:3480000
Cons ci ratio: 1.181201e-01	ci left: 2.976888e-04	ci right 3.353347e-04	k: 1100	n:3480000
KS ci ratio: 9.799793e-04	ci left: 8.209586e-01	ci right 8.217638e-01	k: 2858338	n:3480000
SFMBT2   3480000 perm   6306 sec   (552 perm/sec)   p_kst 8.213615e-01   p_cons 3.160920e-04   p_joint 2.843966e-03

Joint ci ratio: 3.941950e-02	ci left: 2.769798e-03	ci right 2.881459e-03	k: 9860	n:3490000
Cons ci ratio: 1.178527e-01	ci left: 2.982262e-04	ci right 3.358488e-04	k: 1105	n:3490000
KS ci ratio: 9.785634e-04	ci left: 8.209625e-01	ci right 8.217665e-01	k: 2866563	n:3490000
SFMBT2   3490000 perm   6340 sec   (551 perm/sec)   p_kst 8.213648e-01   p_cons 3.166189e-04   p_joint 2.825215e-03

Joint ci ratio: 3.938763e-02	ci left: 2.766411e-03	ci right 2.877843e-03	k: 9876	n:3500000
Cons ci ratio: 1.176402e-01	ci left: 2.984833e-04	ci right 3.360657e-04	k: 1109	n:3500000
KS ci ratio: 9.771822e-04	ci left: 8.209577e-01	ci right 8.217606e-01	k: 2874758	n:3500000
SFMBT2   3500000 perm   6373 sec   (549 perm/sec)   p_kst 8.213594e-01   p_cons 3.168571e-04   p_joint 2.821714e-03

Joint ci ratio: 3.933391e-02	ci left: 2.766146e-03	ci right 2.877412e-03	k: 9903	n:3510000
Cons ci ratio: 1.174815e-01	ci left: 2.984625e-04	ci right 3.359881e-04	k: 1112	n:3510000
KS ci ratio: 9.758277e-04	ci left: 8.209467e-01	ci right 8.217485e-01	k: 2882931	n:3510000
SFMBT2   3510000 perm   6407 sec   (548 perm/sec)   p_kst 8.213479e-01   p_cons 3.168091e-04   p_joint 2.821368e-03

Joint ci ratio: 3.927248e-02	ci left: 2.767008e-03	ci right 2.878131e-03	k: 9934	n:3520000
Cons ci ratio: 1.173235e-01	ci left: 2.984419e-04	ci right 3.359109e-04	k: 1115	n:3520000
KS ci ratio: 9.744580e-04	ci left: 8.209420e-01	ci right 8.217427e-01	k: 2891126	n:3520000
SFMBT2   3520000 perm   6441 sec   (547 perm/sec)   p_kst 8.213426e-01   p_cons 3.167614e-04   p_joint 2.822159e-03

Joint ci ratio: 3.920936e-02	ci left: 2.768146e-03	ci right 2.879131e-03	k: 9966	n:3530000
Cons ci ratio: 1.172710e-01	ci left: 2.978714e-04	ci right 3.352509e-04	k: 1116	n:3530000
KS ci ratio: 9.730941e-04	ci left: 8.209374e-01	ci right 8.217369e-01	k: 2899321	n:3530000
SFMBT2   3530000 perm   6475 sec   (545 perm/sec)   p_kst 8.213374e-01   p_cons 3.161473e-04   p_joint 2.823229e-03

Joint ci ratio: 3.919966e-02	ci left: 2.761724e-03	ci right 2.872425e-03	k: 9971	n:3540000
Cons ci ratio: 1.170094e-01	ci left: 2.984010e-04	ci right 3.357577e-04	k: 1121	n:3540000
KS ci ratio: 9.717218e-04	ci left: 8.209370e-01	ci right 8.217354e-01	k: 2907531	n:3540000
SFMBT2   3540000 perm   6509 sec   (544 perm/sec)   p_kst 8.213364e-01   p_cons 3.166667e-04   p_joint 2.816667e-03

Joint ci ratio: 3.914082e-02	ci left: 2.762313e-03	ci right 2.872867e-03	k: 10001	n:3550000
Cons ci ratio: 1.168533e-01	ci left: 2.983808e-04	ci right 3.356816e-04	k: 1124	n:3550000
KS ci ratio: 9.703507e-04	ci left: 8.209380e-01	ci right 8.217353e-01	k: 2915746	n:3550000
SFMBT2   3550000 perm   6543 sec   (543 perm/sec)   p_kst 8.213369e-01   p_cons 3.166197e-04   p_joint 2.817183e-03

Joint ci ratio: 3.920589e-02	ci left: 2.745374e-03	ci right 2.855437e-03	k: 9968	n:3560000
Cons ci ratio: 1.168014e-01	ci left: 2.978153e-04	ci right 3.350278e-04	k: 1125	n:3560000
KS ci ratio: 9.689140e-04	ci left: 8.209607e-01	ci right 8.217568e-01	k: 2924038	n:3560000
SFMBT2   3560000 perm   6578 sec   (541 perm/sec)   p_kst 8.213590e-01   p_cons 3.160112e-04   p_joint 2.800000e-03

Joint ci ratio: 3.912152e-02	ci left: 2.749611e-03	ci right 2.859601e-03	k: 10011	n:3570000
Cons ci ratio: 1.165429e-01	ci left: 2.983408e-04	ci right 3.355308e-04	k: 1130	n:3570000
KS ci ratio: 9.675483e-04	ci left: 8.209636e-01	ci right 8.217586e-01	k: 2932260	n:3570000
SFMBT2   3570000 perm   6613 sec   (540 perm/sec)   p_kst 8.213613e-01   p_cons 3.165266e-04   p_joint 2.804202e-03

Joint ci ratio: 3.908060e-02	ci left: 2.747739e-03	ci right 2.857537e-03	k: 10032	n:3580000
Cons ci ratio: 1.163887e-01	ci left: 2.983210e-04	ci right 3.354559e-04	k: 1133	n:3580000
KS ci ratio: 9.662177e-04	ci left: 8.209576e-01	ci right 8.217514e-01	k: 2940450	n:3580000
SFMBT2   3580000 perm   6647 sec   (539 perm/sec)   p_kst 8.213547e-01   p_cons 3.164804e-04   p_joint 2.802235e-03

Joint ci ratio: 3.903007e-02	ci left: 2.747257e-03	ci right 2.856890e-03	k: 10058	n:3590000
Cons ci ratio: 1.162350e-01	ci left: 2.983014e-04	ci right 3.353815e-04	k: 1136	n:3590000
KS ci ratio: 9.648560e-04	ci left: 8.209627e-01	ci right 8.217555e-01	k: 2948680	n:3590000
SFMBT2   3590000 perm   6682 sec   (537 perm/sec)   p_kst 8.213593e-01   p_cons 3.164345e-04   p_joint 2.801671e-03

Joint ci ratio: 3.922426e-02	ci left: 2.712394e-03	ci right 2.821186e-03	k: 9959	n:3600000
Cons ci ratio: 1.160820e-01	ci left: 2.982819e-04	ci right 3.353074e-04	k: 1139	n:3600000
KS ci ratio: 9.635164e-04	ci left: 8.209628e-01	ci right 8.217545e-01	k: 2956892	n:3600000
SFMBT2   3600000 perm   6717 sec   (536 perm/sec)   p_kst 8.213589e-01   p_cons 3.163889e-04   p_joint 2.766389e-03

Joint ci ratio: 3.928775e-02	ci left: 2.696102e-03	ci right 2.804421e-03	k: 9927	n:3610000
Cons ci ratio: 1.159295e-01	ci left: 2.982625e-04	ci right 3.352337e-04	k: 1142	n:3610000
KS ci ratio: 9.621670e-04	ci left: 8.209676e-01	ci right 8.217582e-01	k: 2965121	n:3610000
SFMBT2   3610000 perm   6752 sec   (535 perm/sec)   p_kst 8.213632e-01   p_cons 3.163435e-04   p_joint 2.749861e-03

Joint ci ratio: 3.925817e-02	ci left: 2.692758e-03	ci right 2.800858e-03	k: 9942	n:3620000
Cons ci ratio: 1.157272e-01	ci left: 2.985116e-04	ci right 3.354446e-04	k: 1146	n:3620000
KS ci ratio: 9.608178e-04	ci left: 8.209741e-01	ci right 8.217635e-01	k: 2973356	n:3620000
SFMBT2   3620000 perm   6787 sec   (533 perm/sec)   p_kst 8.213691e-01   p_cons 3.165746e-04   p_joint 2.746409e-03

Joint ci ratio: 3.945175e-02	ci left: 2.658880e-03	ci right 2.766158e-03	k: 9845	n:3630000
Cons ci ratio: 1.156265e-01	ci left: 2.982242e-04	ci right 3.350874e-04	k: 1148	n:3630000
KS ci ratio: 9.594724e-04	ci left: 8.209811e-01	ci right 8.217694e-01	k: 2981593	n:3630000
SFMBT2   3630000 perm   6821 sec   (532 perm/sec)   p_kst 8.213755e-01   p_cons 3.162534e-04   p_joint 2.712121e-03

Joint ci ratio: 3.939777e-02	ci left: 2.658920e-03	ci right 2.766050e-03	k: 9872	n:3640000
Cons ci ratio: 1.154758e-01	ci left: 2.982053e-04	ci right 3.350148e-04	k: 1151	n:3640000
KS ci ratio: 9.581498e-04	ci left: 8.209828e-01	ci right 8.217700e-01	k: 2989811	n:3640000
SFMBT2   3640000 perm   6856 sec   (531 perm/sec)   p_kst 8.213766e-01   p_cons 3.162088e-04   p_joint 2.712088e-03

Joint ci ratio: 3.935996e-02	ci left: 2.656789e-03	ci right 2.763728e-03	k: 9891	n:3650000
Cons ci ratio: 1.154258e-01	ci left: 2.976544e-04	ci right 3.343789e-04	k: 1152	n:3650000
KS ci ratio: 9.568245e-04	ci left: 8.209869e-01	ci right 8.217731e-01	k: 2998038	n:3650000
SFMBT2   3650000 perm   6892 sec   (530 perm/sec)   p_kst 8.213803e-01   p_cons 3.156164e-04   p_joint 2.709863e-03

Joint ci ratio: 3.942209e-02	ci left: 2.641143e-03	ci right 2.747624e-03	k: 9860	n:3660000
Cons ci ratio: 1.152759e-01	ci left: 2.976371e-04	ci right 3.343086e-04	k: 1155	n:3660000
KS ci ratio: 9.555208e-04	ci left: 8.209862e-01	ci right 8.217713e-01	k: 3006247	n:3660000
SFMBT2   3660000 perm   6927 sec   (528 perm/sec)   p_kst 8.213790e-01   p_cons 3.155738e-04   p_joint 2.693989e-03

Joint ci ratio: 3.887270e-02	ci left: 2.709496e-03	ci right 2.817177e-03	k: 10140	n:3670000
Cons ci ratio: 1.150770e-01	ci left: 2.978846e-04	ci right 3.345189e-04	k: 1159	n:3670000
KS ci ratio: 9.542170e-04	ci left: 8.209870e-01	ci right 8.217711e-01	k: 3014462	n:3670000
SFMBT2   3670000 perm   6963 sec   (527 perm/sec)   p_kst 8.213793e-01   p_cons 3.158038e-04   p_joint 2.762943e-03

Joint ci ratio: 3.905478e-02	ci left: 2.676838e-03	ci right 2.783730e-03	k: 10046	n:3680000
Cons ci ratio: 1.149779e-01	ci left: 2.976030e-04	ci right 3.341690e-04	k: 1161	n:3680000
KS ci ratio: 9.529080e-04	ci left: 8.209911e-01	ci right 8.217741e-01	k: 3022689	n:3680000
SFMBT2   3680000 perm   6999 sec   (526 perm/sec)   p_kst 8.213829e-01   p_cons 3.154891e-04   p_joint 2.729891e-03

Joint ci ratio: 3.899076e-02	ci left: 2.678439e-03	ci right 2.785216e-03	k: 10079	n:3690000
Cons ci ratio: 1.147805e-01	ci left: 2.978494e-04	ci right 3.343786e-04	k: 1165	n:3690000
KS ci ratio: 9.516720e-04	ci left: 8.209744e-01	ci right 8.217563e-01	k: 3030839	n:3690000
SFMBT2   3690000 perm   7034 sec   (525 perm/sec)   p_kst 8.213656e-01   p_cons 3.157182e-04   p_joint 2.731436e-03

Joint ci ratio: 3.895218e-02	ci left: 2.676553e-03	ci right 2.783147e-03	k: 10099	n:3700000
Cons ci ratio: 1.146331e-01	ci left: 2.978319e-04	ci right 3.343089e-04	k: 1168	n:3700000
KS ci ratio: 9.503865e-04	ci left: 8.209744e-01	ci right 8.217553e-01	k: 3039051	n:3700000
SFMBT2   3700000 perm   7070 sec   (523 perm/sec)   p_kst 8.213651e-01   p_cons 3.156757e-04   p_joint 2.729459e-03

Joint ci ratio: 3.902017e-02	ci left: 2.659996e-03	ci right 2.766119e-03	k: 10064	n:3710000
Cons ci ratio: 1.145352e-01	ci left: 2.975528e-04	ci right 3.339623e-04	k: 1170	n:3710000
KS ci ratio: 9.490400e-04	ci left: 8.209950e-01	ci right 8.217748e-01	k: 3047339	n:3710000
SFMBT2   3710000 perm   7106 sec   (522 perm/sec)   p_kst 8.213852e-01   p_cons 3.153639e-04   p_joint 2.712668e-03

Joint ci ratio: 3.896988e-02	ci left: 2.659767e-03	ci right 2.765741e-03	k: 10090	n:3720000
Cons ci ratio: 1.143888e-01	ci left: 2.975362e-04	ci right 3.338941e-04	k: 1173	n:3720000
KS ci ratio: 9.477322e-04	ci left: 8.210053e-01	ci right 8.217840e-01	k: 3055589	n:3720000
SFMBT2   3720000 perm   7142 sec   (521 perm/sec)   p_kst 8.213949e-01   p_cons 3.153226e-04   p_joint 2.712366e-03

Joint ci ratio: 3.906329e-02	ci left: 2.639892e-03	ci right 2.745333e-03	k: 10042	n:3730000
Cons ci ratio: 1.142429e-01	ci left: 2.975199e-04	ci right 3.338262e-04	k: 1176	n:3730000
KS ci ratio: 9.464314e-04	ci left: 8.210149e-01	ci right 8.217926e-01	k: 3063837	n:3730000
SFMBT2   3730000 perm   7177 sec   (520 perm/sec)   p_kst 8.214040e-01   p_cons 3.152815e-04   p_joint 2.692225e-03

Joint ci ratio: 3.901283e-02	ci left: 2.639718e-03	ci right 2.745012e-03	k: 10068	n:3740000
Cons ci ratio: 1.140493e-01	ci left: 2.977633e-04	ci right 3.340337e-04	k: 1180	n:3740000
KS ci ratio: 9.451283e-04	ci left: 8.210270e-01	ci right 8.218036e-01	k: 3072094	n:3740000
SFMBT2   3740000 perm   7213 sec   (518 perm/sec)   p_kst 8.214155e-01   p_cons 3.155080e-04   p_joint 2.691979e-03

Joint ci ratio: 3.895096e-02	ci left: 2.641129e-03	ci right 2.746308e-03	k: 10100	n:3750000
Cons ci ratio: 1.138566e-01	ci left: 2.980056e-04	ci right 3.342400e-04	k: 1184	n:3750000
KS ci ratio: 9.438614e-04	ci left: 8.210293e-01	ci right 8.218049e-01	k: 3080315	n:3750000
SFMBT2   3750000 perm   7250 sec   (517 perm/sec)   p_kst 8.214173e-01   p_cons 3.157333e-04   p_joint 2.693333e-03

Joint ci ratio: 3.890671e-02	ci left: 2.640162e-03	ci right 2.745181e-03	k: 10123	n:3760000
Cons ci ratio: 1.136171e-01	ci left: 2.985050e-04	ci right 3.347187e-04	k: 1189	n:3760000
KS ci ratio: 9.426107e-04	ci left: 8.210282e-01	ci right 8.218027e-01	k: 3088523	n:3760000
SFMBT2   3760000 perm   7286 sec   (516 perm/sec)   p_kst 8.214157e-01   p_cons 3.162234e-04   p_joint 2.692287e-03

Joint ci ratio: 3.885877e-02	ci left: 2.639726e-03	ci right 2.744595e-03	k: 10148	n:3770000
Cons ci ratio: 1.135218e-01	ci left: 2.982286e-04	ci right 3.343764e-04	k: 1191	n:3770000
KS ci ratio: 9.413284e-04	ci left: 8.210385e-01	ci right 8.218120e-01	k: 3096774	n:3770000
SFMBT2   3770000 perm   7323 sec   (515 perm/sec)   p_kst 8.214255e-01   p_cons 3.159151e-04   p_joint 2.691777e-03

Joint ci ratio: 3.885891e-02	ci left: 2.632742e-03	ci right 2.737334e-03	k: 10148	n:3780000
Cons ci ratio: 1.133792e-01	ci left: 2.982108e-04	ci right 3.343079e-04	k: 1194	n:3780000
KS ci ratio: 9.401140e-04	ci left: 8.210291e-01	ci right 8.218016e-01	k: 3104951	n:3780000
SFMBT2   3780000 perm   7359 sec   (514 perm/sec)   p_kst 8.214156e-01   p_cons 3.158730e-04   p_joint 2.684656e-03

Joint ci ratio: 3.880158e-02	ci left: 2.633634e-03	ci right 2.738104e-03	k: 10178	n:3790000
Cons ci ratio: 1.131899e-01	ci left: 2.984494e-04	ci right 3.345112e-04	k: 1198	n:3790000
KS ci ratio: 9.388199e-04	ci left: 8.210462e-01	ci right 8.218177e-01	k: 3113228	n:3790000
SFMBT2   3790000 perm   7394 sec   (513 perm/sec)   p_kst 8.214322e-01   p_cons 3.160950e-04   p_joint 2.685488e-03

Joint ci ratio: 3.886302e-02	ci left: 2.618364e-03	ci right 2.722396e-03	k: 10146	n:3800000
Cons ci ratio: 1.131900e-01	ci left: 2.976640e-04	ci right 3.336309e-04	k: 1198	n:3800000
KS ci ratio: 9.375605e-04	ci left: 8.210540e-01	ci right 8.218244e-01	k: 3121470	n:3800000
SFMBT2   3800000 perm   7431 sec   (511 perm/sec)   p_kst 8.214395e-01   p_cons 3.152632e-04   p_joint 2.670000e-03

Joint ci ratio: 3.879804e-02	ci left: 2.620329e-03	ci right 2.724261e-03	k: 10180	n:3810000
Cons ci ratio: 1.128609e-01	ci left: 2.986681e-04	ci right 3.346444e-04	k: 1205	n:3810000
KS ci ratio: 9.363841e-04	ci left: 8.210374e-01	ci right 8.218068e-01	k: 3129619	n:3810000
SFMBT2   3810000 perm   7468 sec   (510 perm/sec)   p_kst 8.214223e-01   p_cons 3.162730e-04   p_joint 2.671916e-03

Joint ci ratio: 3.872768e-02	ci left: 2.623061e-03	ci right 2.726909e-03	k: 10217	n:3820000
Cons ci ratio: 1.127208e-01	ci left: 2.986494e-04	ci right 3.345758e-04	k: 1208	n:3820000
KS ci ratio: 9.351787e-04	ci left: 8.210313e-01	ci right 8.217997e-01	k: 3137808	n:3820000
SFMBT2   3820000 perm   7505 sec   (509 perm/sec)   p_kst 8.214157e-01   p_cons 3.162304e-04   p_joint 2.674607e-03

Joint ci ratio: 3.841618e-02	ci left: 2.659138e-03	ci right 2.763548e-03	k: 10383	n:3830000
Cons ci ratio: 1.125348e-01	ci left: 2.988846e-04	ci right 3.347761e-04	k: 1212	n:3830000
KS ci ratio: 9.339771e-04	ci left: 8.210254e-01	ci right 8.217929e-01	k: 3145998	n:3830000
SFMBT2   3830000 perm   7541 sec   (508 perm/sec)   p_kst 8.214094e-01   p_cons 3.164491e-04   p_joint 2.710966e-03

Joint ci ratio: 3.835525e-02	ci left: 2.660724e-03	ci right 2.765028e-03	k: 10416	n:3840000
Cons ci ratio: 1.123959e-01	ci left: 2.988656e-04	ci right 3.347075e-04	k: 1215	n:3840000
KS ci ratio: 9.327677e-04	ci left: 8.210236e-01	ci right 8.217900e-01	k: 3154203	n:3840000
SFMBT2   3840000 perm   7578 sec   (507 perm/sec)   p_kst 8.214070e-01   p_cons 3.164063e-04   p_joint 2.712500e-03

Joint ci ratio: 3.829829e-02	ci left: 2.661788e-03	ci right 2.765975e-03	k: 10447	n:3850000
Cons ci ratio: 1.122575e-01	ci left: 2.988466e-04	ci right 3.346392e-04	k: 1218	n:3850000
KS ci ratio: 9.316084e-04	ci left: 8.210074e-01	ci right 8.217729e-01	k: 3162353	n:3850000
SFMBT2   3850000 perm   7616 sec   (506 perm/sec)   p_kst 8.213904e-01   p_cons 3.163636e-04   p_joint 2.713506e-03

Joint ci ratio: 3.837214e-02	ci left: 2.644628e-03	ci right 2.748348e-03	k: 10407	n:3860000
Cons ci ratio: 1.120280e-01	ci left: 2.993314e-04	ci right 3.351039e-04	k: 1223	n:3860000
KS ci ratio: 9.303942e-04	ci left: 8.210100e-01	ci right 8.217745e-01	k: 3170575	n:3860000
SFMBT2   3860000 perm   7653 sec   (504 perm/sec)   p_kst 8.213925e-01   p_cons 3.168394e-04   p_joint 2.696114e-03

Joint ci ratio: 3.838522e-02	ci left: 2.636003e-03	ci right 2.739420e-03	k: 10400	n:3870000
Cons ci ratio: 1.118453e-01	ci left: 2.995626e-04	ci right 3.353005e-04	k: 1227	n:3870000
KS ci ratio: 9.291839e-04	ci left: 8.210129e-01	ci right 8.217763e-01	k: 3178798	n:3870000
SFMBT2   3870000 perm   7691 sec   (503 perm/sec)   p_kst 8.213948e-01   p_cons 3.170543e-04   p_joint 2.687339e-03

Joint ci ratio: 3.833734e-02	ci left: 2.635846e-03	ci right 2.739125e-03	k: 10426	n:3880000
Cons ci ratio: 1.117090e-01	ci left: 2.995421e-04	ci right 3.352312e-04	k: 1230	n:3880000
KS ci ratio: 9.280142e-04	ci left: 8.210043e-01	ci right 8.217668e-01	k: 3186977	n:3880000
SFMBT2   3880000 perm   7728 sec   (502 perm/sec)   p_kst 8.213858e-01   p_cons 3.170103e-04   p_joint 2.687113e-03

Joint ci ratio: 3.834854e-02	ci left: 2.627542e-03	ci right 2.730527e-03	k: 10420	n:3890000
Cons ci ratio: 1.115279e-01	ci left: 2.997717e-04	ci right 3.354263e-04	k: 1234	n:3890000
KS ci ratio: 9.268132e-04	ci left: 8.210072e-01	ci right 8.217687e-01	k: 3195200	n:3890000
SFMBT2   3890000 perm   7765 sec   (501 perm/sec)   p_kst 8.213882e-01   p_cons 3.172237e-04   p_joint 2.678663e-03

Joint ci ratio: 3.830447e-02	ci left: 2.626900e-03	ci right 2.729738e-03	k: 10444	n:3900000
Cons ci ratio: 1.114828e-01	ci left: 2.992523e-04	ci right 3.348298e-04	k: 1235	n:3900000
KS ci ratio: 9.256177e-04	ci left: 8.210098e-01	ci right 8.217703e-01	k: 3203422	n:3900000
SFMBT2   3900000 perm   7803 sec   (500 perm/sec)   p_kst 8.213903e-01   p_cons 3.166667e-04   p_joint 2.677949e-03

Joint ci ratio: 3.825322e-02	ci left: 2.627274e-03	ci right 2.729986e-03	k: 10472	n:3910000
Cons ci ratio: 1.113478e-01	ci left: 2.992328e-04	ci right 3.347621e-04	k: 1238	n:3910000
KS ci ratio: 9.244316e-04	ci left: 8.210108e-01	ci right 8.217703e-01	k: 3211638	n:3910000
SFMBT2   3910000 perm   7841 sec   (499 perm/sec)   p_kst 8.213908e-01   p_cons 3.166240e-04   p_joint 2.678261e-03

Joint ci ratio: 3.820583e-02	ci left: 2.627141e-03	ci right 2.729718e-03	k: 10498	n:3920000
Cons ci ratio: 1.110791e-01	ci left: 2.999575e-04	ci right 3.354813e-04	k: 1244	n:3920000
KS ci ratio: 9.232460e-04	ci left: 8.210131e-01	ci right 8.217717e-01	k: 3219859	n:3920000
SFMBT2   3920000 perm   7879 sec   (498 perm/sec)   p_kst 8.213926e-01   p_cons 3.173469e-04   p_joint 2.678061e-03

Joint ci ratio: 3.815498e-02	ci left: 2.627513e-03	ci right 2.729965e-03	k: 10526	n:3930000
Cons ci ratio: 1.110345e-01	ci left: 2.994416e-04	ci right 3.348892e-04	k: 1245	n:3930000
KS ci ratio: 9.220642e-04	ci left: 8.210156e-01	ci right 8.217732e-01	k: 3228081	n:3930000
SFMBT2   3930000 perm   7917 sec   (496 perm/sec)   p_kst 8.213947e-01   p_cons 3.167939e-04   p_joint 2.678372e-03

Joint ci ratio: 3.809891e-02	ci left: 2.628637e-03	ci right 2.730979e-03	k: 10557	n:3940000
Cons ci ratio: 1.108124e-01	ci left: 2.999154e-04	ci right 3.353434e-04	k: 1250	n:3940000
KS ci ratio: 9.209419e-04	ci left: 8.210006e-01	ci right 8.217573e-01	k: 3236234	n:3940000
SFMBT2   3940000 perm   7955 sec   (495 perm/sec)   p_kst 8.213792e-01   p_cons 3.172589e-04   p_joint 2.679442e-03

Joint ci ratio: 3.804308e-02	ci left: 2.629756e-03	ci right 2.731988e-03	k: 10588	n:3950000
Cons ci ratio: 1.105476e-01	ci left: 3.006331e-04	ci right 3.360555e-04	k: 1256	n:3950000
KS ci ratio: 9.198085e-04	ci left: 8.209905e-01	ci right 8.217462e-01	k: 3244406	n:3950000
SFMBT2   3950000 perm   7993 sec   (494 perm/sec)   p_kst 8.213686e-01   p_cons 3.179747e-04   p_joint 2.680506e-03

Joint ci ratio: 3.798032e-02	ci left: 2.631869e-03	ci right 2.734011e-03	k: 10623	n:3960000
Cons ci ratio: 1.102410e-01	ci left: 3.015928e-04	ci right 3.370233e-04	k: 1263	n:3960000
KS ci ratio: 9.185956e-04	ci left: 8.210072e-01	ci right 8.217620e-01	k: 3252684	n:3960000
SFMBT2   3960000 perm   8031 sec   (493 perm/sec)   p_kst 8.213848e-01   p_cons 3.189394e-04   p_joint 2.682576e-03

Joint ci ratio: 3.791966e-02	ci left: 2.633723e-03	ci right 2.735770e-03	k: 10657	n:3970000
Cons ci ratio: 1.100236e-01	ci left: 3.020579e-04	ci right 3.374685e-04	k: 1268	n:3970000
KS ci ratio: 9.174733e-04	ci left: 8.209964e-01	ci right 8.217502e-01	k: 3260853	n:3970000
SFMBT2   3970000 perm   8069 sec   (492 perm/sec)   p_kst 8.213736e-01   p_cons 3.193955e-04   p_joint 2.684383e-03

Joint ci ratio: 3.788772e-02	ci left: 2.631585e-03	ci right 2.733462e-03	k: 10675	n:3980000
Cons ci ratio: 1.099370e-01	ci left: 3.017876e-04	ci right 3.371369e-04	k: 1270	n:3980000
KS ci ratio: 9.162938e-04	ci left: 8.210052e-01	ci right 8.217581e-01	k: 3269100	n:3980000
SFMBT2   3980000 perm   8107 sec   (491 perm/sec)   p_kst 8.213819e-01   p_cons 3.190955e-04   p_joint 2.682161e-03

Joint ci ratio: 3.783813e-02	ci left: 2.631941e-03	ci right 2.733695e-03	k: 10703	n:3990000
Cons ci ratio: 1.097644e-01	ci left: 3.020062e-04	ci right 3.373220e-04	k: 1274	n:3990000
KS ci ratio: 9.151299e-04	ci left: 8.210105e-01	ci right 8.217624e-01	k: 3277333	n:3990000
SFMBT2   3990000 perm   8145 sec   (490 perm/sec)   p_kst 8.213867e-01   p_cons 3.192982e-04   p_joint 2.682456e-03

Joint ci ratio: 3.778873e-02	ci left: 2.632295e-03	ci right 2.733927e-03	k: 10731	n:4000000
Cons ci ratio: 1.095498e-01	ci left: 3.024670e-04	ci right 3.377630e-04	k: 1279	n:4000000
KS ci ratio: 9.139556e-04	ci left: 8.210205e-01	ci right 8.217715e-01	k: 3285585	n:4000000
SFMBT2   4000000 perm   8183 sec   (489 perm/sec)   p_kst 8.213963e-01   p_cons 3.197500e-04   p_joint 2.682750e-03

Joint ci ratio: 3.774480e-02	ci left: 2.631906e-03	ci right 2.733403e-03	k: 10756	n:4010000
Cons ci ratio: 1.092939e-01	ci left: 3.031680e-04	ci right 3.384579e-04	k: 1285	n:4010000
KS ci ratio: 9.128292e-04	ci left: 8.210165e-01	ci right 8.217666e-01	k: 3293781	n:4010000
SFMBT2   4010000 perm   8222 sec   (488 perm/sec)   p_kst 8.213918e-01   p_cons 3.204489e-04   p_joint 2.682294e-03

Joint ci ratio: 3.768701e-02	ci left: 2.633491e-03	ci right 2.734889e-03	k: 10789	n:4020000
Cons ci ratio: 1.090820e-01	ci left: 3.036237e-04	ci right 3.388937e-04	k: 1290	n:4020000
KS ci ratio: 9.116699e-04	ci left: 8.210245e-01	ci right 8.217736e-01	k: 3302025	n:4020000
SFMBT2   4020000 perm   8260 sec   (487 perm/sec)   p_kst 8.213993e-01   p_cons 3.208955e-04   p_joint 2.683831e-03

Joint ci ratio: 3.774505e-02	ci left: 2.618844e-03	ci right 2.719838e-03	k: 10756	n:4030000
Cons ci ratio: 1.088714e-01	ci left: 3.040771e-04	ci right 3.393272e-04	k: 1295	n:4030000
KS ci ratio: 9.105049e-04	ci left: 8.210356e-01	ci right 8.217838e-01	k: 3310282	n:4030000
SFMBT2   4030000 perm   8299 sec   (486 perm/sec)   p_kst 8.214099e-01   p_cons 3.213400e-04   p_joint 2.668983e-03

Joint ci ratio: 3.769952e-02	ci left: 2.618737e-03	ci right 2.719602e-03	k: 10782	n:4040000
Cons ci ratio: 1.088294e-01	ci left: 3.035652e-04	ci right 3.387416e-04	k: 1296	n:4040000
KS ci ratio: 9.093452e-04	ci left: 8.210465e-01	ci right 8.217937e-01	k: 3318538	n:4040000
SFMBT2   4040000 perm   8337 sec   (485 perm/sec)   p_kst 8.214203e-01   p_cons 3.207921e-04   p_joint 2.668812e-03

Joint ci ratio: 3.764543e-02	ci left: 2.619853e-03	ci right 2.720613e-03	k: 10813	n:4050000
Cons ci ratio: 1.086202e-01	ci left: 3.040167e-04	ci right 3.391733e-04	k: 1301	n:4050000
KS ci ratio: 9.082136e-04	ci left: 8.210496e-01	ci right 8.217959e-01	k: 3326763	n:4050000
SFMBT2   4050000 perm   8376 sec   (484 perm/sec)   p_kst 8.214230e-01   p_cons 3.212346e-04   p_joint 2.669877e-03

Joint ci ratio: 3.759330e-02	ci left: 2.620720e-03	ci right 2.721371e-03	k: 10843	n:4060000
Cons ci ratio: 1.084953e-01	ci left: 3.039867e-04	ci right 3.390969e-04	k: 1304	n:4060000
KS ci ratio: 9.071182e-04	ci left: 8.210424e-01	ci right 8.217877e-01	k: 3334946	n:4060000
SFMBT2   4060000 perm   8415 sec   (482 perm/sec)   p_kst 8.214153e-01   p_cons 3.211823e-04   p_joint 2.670690e-03

Joint ci ratio: 3.756045e-02	ci left: 2.618905e-03	ci right 2.719396e-03	k: 10862	n:4070000
Cons ci ratio: 1.084123e-01	ci left: 3.037179e-04	ci right 3.387684e-04	k: 1306	n:4070000
KS ci ratio: 9.059858e-04	ci left: 8.210484e-01	ci right 8.217929e-01	k: 3343183	n:4070000
SFMBT2   4070000 perm   8454 sec   (481 perm/sec)   p_kst 8.214209e-01   p_cons 3.208845e-04   p_joint 2.668796e-03

Joint ci ratio: 3.757965e-02	ci left: 2.609815e-03	ci right 2.710010e-03	k: 10851	n:4080000
Cons ci ratio: 1.083294e-01	ci left: 3.034504e-04	ci right 3.384416e-04	k: 1308	n:4080000
KS ci ratio: 9.049105e-04	ci left: 8.210373e-01	ci right 8.217809e-01	k: 3351350	n:4080000
SFMBT2   4080000 perm   8493 sec   (480 perm/sec)   p_kst 8.214093e-01   p_cons 3.205882e-04   p_joint 2.659559e-03

Joint ci ratio: 3.753472e-02	ci left: 2.609732e-03	ci right 2.709801e-03	k: 10877	n:4090000
Cons ci ratio: 1.082055e-01	ci left: 3.034221e-04	ci right 3.383675e-04	k: 1311	n:4090000
KS ci ratio: 9.038007e-04	ci left: 8.210387e-01	ci right 8.217814e-01	k: 3359568	n:4090000
SFMBT2   4090000 perm   8533 sec   (479 perm/sec)   p_kst 8.214103e-01   p_cons 3.205379e-04   p_joint 2.659413e-03

Joint ci ratio: 3.748995e-02	ci left: 2.609649e-03	ci right 2.709592e-03	k: 10903	n:4100000
Cons ci ratio: 1.081643e-01	ci left: 3.029194e-04	ci right 3.377927e-04	k: 1312	n:4100000
KS ci ratio: 9.026889e-04	ci left: 8.210421e-01	ci right 8.217838e-01	k: 3367794	n:4100000
SFMBT2   4100000 perm   8572 sec   (478 perm/sec)   p_kst 8.214132e-01   p_cons 3.200000e-04   p_joint 2.659268e-03

Joint ci ratio: 3.745564e-02	ci left: 2.608120e-03	ci right 2.707912e-03	k: 10923	n:4110000
Cons ci ratio: 1.081232e-01	ci left: 3.024191e-04	ci right 3.372207e-04	k: 1313	n:4110000
KS ci ratio: 9.015573e-04	ci left: 8.210532e-01	ci right 8.217940e-01	k: 3376052	n:4110000
SFMBT2   4110000 perm   8612 sec   (477 perm/sec)   p_kst 8.214238e-01   p_cons 3.194647e-04   p_joint 2.657664e-03

Joint ci ratio: 3.763233e-02	ci left: 2.577264e-03	ci right 2.676350e-03	k: 10821	n:4120000
Cons ci ratio: 1.080410e-01	ci left: 3.021573e-04	ci right 3.369008e-04	k: 1315	n:4120000
KS ci ratio: 9.004336e-04	ci left: 8.210631e-01	ci right 8.218030e-01	k: 3384305	n:4120000
SFMBT2   4120000 perm   8650 sec   (476 perm/sec)   p_kst 8.214333e-01   p_cons 3.191748e-04   p_joint 2.626456e-03

Joint ci ratio: 3.759068e-02	ci left: 2.576780e-03	ci right 2.675736e-03	k: 10845	n:4130000
Cons ci ratio: 1.079181e-01	ci left: 3.021325e-04	ci right 3.368310e-04	k: 1318	n:4130000
KS ci ratio: 8.993163e-04	ci left: 8.210722e-01	ci right 8.218111e-01	k: 3392555	n:4130000
SFMBT2   4130000 perm   8690 sec   (475 perm/sec)   p_kst 8.214419e-01   p_cons 3.191283e-04   p_joint 2.625908e-03

Joint ci ratio: 3.752668e-02	ci left: 2.579409e-03	ci right 2.678294e-03	k: 10882	n:4140000
Cons ci ratio: 1.077548e-01	ci left: 3.023428e-04	ci right 3.370096e-04	k: 1322	n:4140000
KS ci ratio: 8.982195e-04	ci left: 8.210759e-01	ci right 8.218140e-01	k: 3400783	n:4140000
SFMBT2   4140000 perm   8729 sec   (474 perm/sec)   p_kst 8.214452e-01   p_cons 3.193237e-04   p_joint 2.628502e-03

Joint ci ratio: 3.748021e-02	ci left: 2.579639e-03	ci right 2.678407e-03	k: 10909	n:4150000
Cons ci ratio: 1.075923e-01	ci left: 3.025522e-04	ci right 3.371874e-04	k: 1326	n:4150000
KS ci ratio: 8.971775e-04	ci left: 8.210630e-01	ci right 8.218002e-01	k: 3408942	n:4150000
SFMBT2   4150000 perm   8769 sec   (473 perm/sec)   p_kst 8.214318e-01   p_cons 3.195181e-04   p_joint 2.628675e-03

Joint ci ratio: 3.744250e-02	ci left: 2.578676e-03	ci right 2.677306e-03	k: 10931	n:4160000
Cons ci ratio: 1.075518e-01	ci left: 3.020588e-04	ci right 3.366237e-04	k: 1327	n:4160000
KS ci ratio: 8.961098e-04	ci left: 8.210597e-01	ci right 8.217961e-01	k: 3417141	n:4160000
SFMBT2   4160000 perm   8809 sec   (472 perm/sec)   p_kst 8.214281e-01   p_cons 3.189904e-04   p_joint 2.627644e-03

Joint ci ratio: 3.740661e-02	ci left: 2.577481e-03	ci right 2.675969e-03	k: 10952	n:4170000
Cons ci ratio: 1.074305e-01	ci left: 3.020345e-04	ci right 3.365552e-04	k: 1330	n:4170000
KS ci ratio: 8.950451e-04	ci left: 8.210568e-01	ci right 8.217922e-01	k: 3425341	n:4170000
SFMBT2   4170000 perm   8848 sec   (471 perm/sec)   p_kst 8.214247e-01   p_cons 3.189448e-04   p_joint 2.626379e-03

Joint ci ratio: 3.737424e-02	ci left: 2.575818e-03	ci right 2.674155e-03	k: 10971	n:4180000
Cons ci ratio: 1.073499e-01	ci left: 3.017776e-04	ci right 3.362414e-04	k: 1332	n:4180000
KS ci ratio: 8.939864e-04	ci left: 8.210531e-01	ci right 8.217876e-01	k: 3433538	n:4180000
SFMBT2   4180000 perm   8888 sec   (470 perm/sec)   p_kst 8.214206e-01   p_cons 3.186603e-04   p_joint 2.624641e-03

Joint ci ratio: 3.733685e-02	ci left: 2.574872e-03	ci right 2.673073e-03	k: 10993	n:4190000
Cons ci ratio: 1.071091e-01	ci left: 3.024509e-04	ci right 3.369092e-04	k: 1338	n:4190000
KS ci ratio: 8.928770e-04	ci left: 8.210673e-01	ci right 8.218010e-01	k: 3441810	n:4190000
SFMBT2   4190000 perm   8929 sec   (469 perm/sec)   p_kst 8.214344e-01   p_cons 3.193317e-04   p_joint 2.623628e-03

Joint ci ratio: 3.728260e-02	ci left: 2.576289e-03	ci right 2.674398e-03	k: 11025	n:4200000
Cons ci ratio: 1.068302e-01	ci left: 3.033529e-04	ci right 3.378183e-04	k: 1345	n:4200000
KS ci ratio: 8.918462e-04	ci left: 8.210569e-01	ci right 8.217898e-01	k: 3449979	n:4200000
SFMBT2   4200000 perm   8969 sec   (468 perm/sec)   p_kst 8.214236e-01   p_cons 3.202381e-04   p_joint 2.625000e-03

Joint ci ratio: 3.721341e-02	ci left: 2.579818e-03	ci right 2.677875e-03	k: 11066	n:4210000
Cons ci ratio: 1.065928e-01	ci left: 3.040195e-04	ci right 3.384791e-04	k: 1351	n:4210000
KS ci ratio: 8.907851e-04	ci left: 8.210578e-01	ci right 8.217897e-01	k: 3458195	n:4210000
SFMBT2   4210000 perm   9010 sec   (467 perm/sec)   p_kst 8.214240e-01   p_cons 3.209026e-04   p_joint 2.628504e-03

Joint ci ratio: 3.729301e-02	ci left: 2.562671e-03	ci right 2.660289e-03	k: 11019	n:4220000
Cons ci ratio: 1.065141e-01	ci left: 3.037604e-04	ci right 3.381636e-04	k: 1353	n:4220000
KS ci ratio: 8.897034e-04	ci left: 8.210667e-01	ci right 8.217978e-01	k: 3466445	n:4220000
SFMBT2   4220000 perm   9050 sec   (466 perm/sec)   p_kst 8.214325e-01   p_cons 3.206161e-04   p_joint 2.611137e-03

Joint ci ratio: 3.723895e-02	ci left: 2.564107e-03	ci right 2.661635e-03	k: 11051	n:4230000
Cons ci ratio: 1.063179e-01	ci left: 3.041928e-04	ci right 3.385776e-04	k: 1358	n:4230000
KS ci ratio: 8.886699e-04	ci left: 8.210609e-01	ci right 8.217911e-01	k: 3474633	n:4230000
SFMBT2   4230000 perm   9091 sec   (465 perm/sec)   p_kst 8.214262e-01   p_cons 3.210402e-04   p_joint 2.612530e-03

Joint ci ratio: 3.719860e-02	ci left: 2.563667e-03	ci right 2.661071e-03	k: 11075	n:4240000
Cons ci ratio: 1.062398e-01	ci left: 3.039346e-04	ci right 3.382633e-04	k: 1360	n:4240000
KS ci ratio: 8.876258e-04	ci left: 8.210599e-01	ci right 8.217892e-01	k: 3482841	n:4240000
SFMBT2   4240000 perm   9131 sec   (464 perm/sec)   p_kst 8.214248e-01   p_cons 3.207547e-04   p_joint 2.612028e-03

Joint ci ratio: 3.675714e-02	ci left: 2.619879e-03	ci right 2.718212e-03	k: 11342	n:4250000
Cons ci ratio: 1.060064e-01	ci left: 3.045937e-04	ci right 3.389166e-04	k: 1366	n:4250000
KS ci ratio: 8.865996e-04	ci left: 8.210541e-01	ci right 8.217826e-01	k: 3491029	n:4250000
SFMBT2   4250000 perm   9171 sec   (463 perm/sec)   p_kst 8.214186e-01   p_cons 3.214118e-04   p_joint 2.668706e-03

Joint ci ratio: 3.678002e-02	ci left: 2.610473e-03	ci right 2.708515e-03	k: 11328	n:4260000
Cons ci ratio: 1.058516e-01	ci left: 3.047928e-04	ci right 3.390848e-04	k: 1370	n:4260000
KS ci ratio: 8.855571e-04	ci left: 8.210550e-01	ci right 8.217826e-01	k: 3499245	n:4260000
SFMBT2   4260000 perm   9212 sec   (462 perm/sec)   p_kst 8.214190e-01   p_cons 3.215962e-04   p_joint 2.659155e-03

Joint ci ratio: 3.684214e-02	ci left: 2.595541e-03	ci right 2.693191e-03	k: 11290	n:4270000
Cons ci ratio: 1.056591e-01	ci left: 3.052190e-04	ci right 3.394927e-04	k: 1375	n:4270000
KS ci ratio: 8.844745e-04	ci left: 8.210704e-01	ci right 8.217971e-01	k: 3507523	n:4270000
SFMBT2   4270000 perm   9252 sec   (462 perm/sec)   p_kst 8.214340e-01   p_cons 3.220141e-04   p_joint 2.644028e-03

Joint ci ratio: 3.679654e-02	ci left: 2.595959e-03	ci right 2.693501e-03	k: 11318	n:4280000
Cons ci ratio: 1.055058e-01	ci left: 3.054158e-04	ci right 3.396587e-04	k: 1379	n:4280000
KS ci ratio: 8.834176e-04	ci left: 8.210784e-01	ci right 8.218043e-01	k: 3515770	n:4280000
SFMBT2   4280000 perm   9293 sec   (461 perm/sec)   p_kst 8.214416e-01   p_cons 3.221963e-04   p_joint 2.644393e-03

Joint ci ratio: 3.674461e-02	ci left: 2.597298e-03	ci right 2.694750e-03	k: 11350	n:4290000
Cons ci ratio: 1.053532e-01	ci left: 3.056117e-04	ci right 3.398239e-04	k: 1383	n:4290000
KS ci ratio: 8.823625e-04	ci left: 8.210871e-01	ci right 8.218122e-01	k: 3524020	n:4290000
SFMBT2   4290000 perm   9335 sec   (460 perm/sec)   p_kst 8.214499e-01   p_cons 3.223776e-04   p_joint 2.645688e-03

Joint ci ratio: 3.671069e-02	ci left: 2.596097e-03	ci right 2.693412e-03	k: 11371	n:4300000
Cons ci ratio: 1.052772e-01	ci left: 3.053538e-04	ci right 3.395110e-04	k: 1385	n:4300000
KS ci ratio: 8.812922e-04	ci left: 8.211021e-01	ci right 8.218263e-01	k: 3532297	n:4300000
SFMBT2   4300000 perm   9376 sec   (459 perm/sec)   p_kst 8.214644e-01   p_cons 3.220930e-04   p_joint 2.644419e-03

Joint ci ratio: 3.666396e-02	ci left: 2.596740e-03	ci right 2.693953e-03	k: 11400	n:4310000
Cons ci ratio: 1.050878e-01	ci left: 3.057749e-04	ci right 3.399139e-04	k: 1390	n:4310000
KS ci ratio: 8.802481e-04	ci left: 8.211096e-01	ci right 8.218329e-01	k: 3540542	n:4310000
SFMBT2   4310000 perm   9417 sec   (458 perm/sec)   p_kst 8.214715e-01   p_cons 3.225058e-04   p_joint 2.645012e-03

Joint ci ratio: 3.674008e-02	ci left: 2.579949e-03	ci right 2.676738e-03	k: 11353	n:4320000
Cons ci ratio: 1.049370e-01	ci left: 3.059687e-04	ci right 3.400773e-04	k: 1394	n:4320000
KS ci ratio: 8.792320e-04	ci left: 8.211089e-01	ci right 8.218314e-01	k: 3548752	n:4320000
SFMBT2   4320000 perm   9458 sec   (457 perm/sec)   p_kst 8.214704e-01   p_cons 3.226852e-04   p_joint 2.628009e-03

Joint ci ratio: 3.669809e-02	ci left: 2.579940e-03	ci right 2.676616e-03	k: 11379	n:4330000
Cons ci ratio: 1.047869e-01	ci left: 3.061616e-04	ci right 3.402399e-04	k: 1398	n:4330000
KS ci ratio: 8.781903e-04	ci left: 8.211180e-01	ci right 8.218396e-01	k: 3557004	n:4330000
SFMBT2   4330000 perm   9499 sec   (456 perm/sec)   p_kst 8.214790e-01   p_cons 3.228637e-04   p_joint 2.627945e-03

Joint ci ratio: 3.676629e-02	ci left: 2.564407e-03	ci right 2.660683e-03	k: 11337	n:4340000
Cons ci ratio: 1.047495e-01	ci left: 3.056806e-04	ci right 3.396924e-04	k: 1399	n:4340000
KS ci ratio: 8.771847e-04	ci left: 8.211161e-01	ci right 8.218369e-01	k: 3565209	n:4340000
SFMBT2   4340000 perm   9541 sec   (455 perm/sec)   p_kst 8.214767e-01   p_cons 3.223502e-04   p_joint 2.612212e-03

Joint ci ratio: 3.672582e-02	ci left: 2.564206e-03	ci right 2.660366e-03	k: 11362	n:4350000
Cons ci ratio: 1.046748e-01	ci left: 3.054256e-04	ci right 3.393833e-04	k: 1401	n:4350000
KS ci ratio: 8.762066e-04	ci left: 8.211062e-01	ci right 8.218262e-01	k: 3573379	n:4350000
SFMBT2   4350000 perm   9582 sec   (454 perm/sec)   p_kst 8.214664e-01   p_cons 3.220690e-04   p_joint 2.611954e-03

Joint ci ratio: 3.668711e-02	ci left: 2.563779e-03	ci right 2.659819e-03	k: 11386	n:4360000
Cons ci ratio: 1.043773e-01	ci left: 3.065120e-04	ci right 3.404877e-04	k: 1409	n:4360000
KS ci ratio: 8.752051e-04	ci left: 8.211053e-01	ci right 8.218245e-01	k: 3581588	n:4360000
SFMBT2   4360000 perm   9624 sec   (453 perm/sec)   p_kst 8.214651e-01   p_cons 3.231651e-04   p_joint 2.611468e-03

Joint ci ratio: 3.664047e-02	ci left: 2.564488e-03	ci right 2.660430e-03	k: 11415	n:4370000
Cons ci ratio: 1.042665e-01	ci left: 3.064792e-04	ci right 3.404129e-04	k: 1412	n:4370000
KS ci ratio: 8.742350e-04	ci left: 8.210951e-01	ci right 8.218134e-01	k: 3589756	n:4370000
SFMBT2   4370000 perm   9666 sec   (452 perm/sec)   p_kst 8.214545e-01   p_cons 3.231121e-04   p_joint 2.612128e-03

Joint ci ratio: 3.659882e-02	ci left: 2.564514e-03	ci right 2.660346e-03	k: 11441	n:4380000
Cons ci ratio: 1.041192e-01	ci left: 3.066689e-04	ci right 3.405728e-04	k: 1416	n:4380000
KS ci ratio: 8.732708e-04	ci left: 8.210839e-01	ci right 8.218015e-01	k: 3597920	n:4380000
SFMBT2   4380000 perm   9709 sec   (451 perm/sec)   p_kst 8.214429e-01   p_cons 3.232877e-04   p_joint 2.612100e-03

Joint ci ratio: 3.653974e-02	ci left: 2.567024e-03	ci right 2.662791e-03	k: 11478	n:4390000
Cons ci ratio: 1.039725e-01	ci left: 3.068578e-04	ci right 3.407318e-04	k: 1420	n:4390000
KS ci ratio: 8.723165e-04	ci left: 8.210706e-01	ci right 8.217873e-01	k: 3606074	n:4390000
SFMBT2   4390000 perm   9750 sec   (450 perm/sec)   p_kst 8.214292e-01   p_cons 3.234624e-04   p_joint 2.614579e-03

Joint ci ratio: 3.656701e-02	ci left: 2.557361e-03	ci right 2.652841e-03	k: 11461	n:4400000
Cons ci ratio: 1.038630e-01	ci left: 3.068245e-04	ci right 3.406570e-04	k: 1423	n:4400000
KS ci ratio: 8.712979e-04	ci left: 8.210800e-01	ci right 8.217959e-01	k: 3614328	n:4400000
SFMBT2   4400000 perm   9792 sec   (449 perm/sec)   p_kst 8.214382e-01   p_cons 3.234091e-04   p_joint 2.604773e-03

Joint ci ratio: 3.669088e-02	ci left: 2.534261e-03	ci right 2.629206e-03	k: 11384	n:4410000
Cons ci ratio: 1.036811e-01	ci left: 3.072331e-04	ci right 3.410477e-04	k: 1428	n:4410000
KS ci ratio: 8.702962e-04	ci left: 8.210849e-01	ci right 8.218000e-01	k: 3622562	n:4410000
SFMBT2   4410000 perm   9834 sec   (448 perm/sec)   p_kst 8.214426e-01   p_cons 3.238095e-04   p_joint 2.581406e-03

Joint ci ratio: 3.665711e-02	ci left: 2.533235e-03	ci right 2.628052e-03	k: 11405	n:4420000
Cons ci ratio: 1.036086e-01	ci left: 3.069787e-04	ci right 3.407403e-04	k: 1430	n:4420000
KS ci ratio: 8.693463e-04	ci left: 8.210734e-01	ci right 8.217877e-01	k: 3630724	n:4420000
SFMBT2   4420000 perm   9876 sec   (448 perm/sec)   p_kst 8.214308e-01   p_cons 3.235294e-04   p_joint 2.580317e-03

Joint ci ratio: 3.660738e-02	ci left: 2.534450e-03	ci right 2.629181e-03	k: 11436	n:4430000
Cons ci ratio: 1.034641e-01	ci left: 3.071653e-04	ci right 3.408975e-04	k: 1434	n:4430000
KS ci ratio: 8.683481e-04	ci left: 8.210794e-01	ci right 8.217929e-01	k: 3638963	n:4430000
SFMBT2   4430000 perm   9919 sec   (447 perm/sec)   p_kst 8.214363e-01   p_cons 3.237020e-04   p_joint 2.581490e-03

Joint ci ratio: 3.656424e-02	ci left: 2.534768e-03	ci right 2.629396e-03	k: 11463	n:4440000
Cons ci ratio: 1.034281e-01	ci left: 3.066929e-04	ci right 3.403607e-04	k: 1435	n:4440000
KS ci ratio: 8.673679e-04	ci left: 8.210804e-01	ci right 8.217931e-01	k: 3647180	n:4440000
SFMBT2   4440000 perm   9961 sec   (446 perm/sec)   p_kst 8.214369e-01   p_cons 3.231982e-04   p_joint 2.581757e-03

Joint ci ratio: 3.651010e-02	ci left: 2.536642e-03	ci right 2.631198e-03	k: 11497	n:4450000
Cons ci ratio: 1.032843e-01	ci left: 3.068794e-04	ci right 3.405180e-04	k: 1439	n:4450000
KS ci ratio: 8.664037e-04	ci left: 8.210771e-01	ci right 8.217890e-01	k: 3655378	n:4450000
SFMBT2   4450000 perm   10004 sec   (445 perm/sec)   p_kst 8.214333e-01   p_cons 3.233708e-04   p_joint 2.583596e-03

Joint ci ratio: 3.646096e-02	ci left: 2.537842e-03	ci right 2.632312e-03	k: 11528	n:4460000
Cons ci ratio: 1.031412e-01	ci left: 3.070650e-04	ci right 3.406745e-04	k: 1443	n:4460000
KS ci ratio: 8.653937e-04	ci left: 8.210904e-01	ci right 8.218015e-01	k: 3663650	n:4460000
SFMBT2   4460000 perm   10047 sec   (444 perm/sec)   p_kst 8.214462e-01   p_cons 3.235426e-04   p_joint 2.584753e-03

Joint ci ratio: 3.643573e-02	ci left: 2.535711e-03	ci right 2.630036e-03	k: 11544	n:4470000
Cons ci ratio: 1.030698e-01	ci left: 3.068139e-04	ci right 3.403713e-04	k: 1445	n:4470000
KS ci ratio: 8.644518e-04	ci left: 8.210818e-01	ci right 8.217921e-01	k: 3671824	n:4470000
SFMBT2   4470000 perm   10089 sec   (443 perm/sec)   p_kst 8.214371e-01   p_cons 3.232662e-04   p_joint 2.582550e-03

Joint ci ratio: 3.638374e-02	ci left: 2.537350e-03	ci right 2.631598e-03	k: 11577	n:4480000
Cons ci ratio: 1.029631e-01	ci left: 3.067815e-04	ci right 3.402984e-04	k: 1448	n:4480000
KS ci ratio: 8.634341e-04	ci left: 8.211000e-01	ci right 8.218094e-01	k: 3680118	n:4480000
SFMBT2   4480000 perm   10131 sec   (442 perm/sec)   p_kst 8.214549e-01   p_cons 3.232143e-04   p_joint 2.584152e-03

Joint ci ratio: 3.633197e-02	ci left: 2.538982e-03	ci right 2.633154e-03	k: 11610	n:4490000
Cons ci ratio: 1.028213e-01	ci left: 3.069662e-04	ci right 3.404543e-04	k: 1452	n:4490000
KS ci ratio: 8.624574e-04	ci left: 8.211054e-01	ci right 8.218140e-01	k: 3688355	n:4490000
SFMBT2   4490000 perm   10174 sec   (441 perm/sec)   p_kst 8.214599e-01   p_cons 3.233853e-04   p_joint 2.585746e-03

Joint ci ratio: 3.629292e-02	ci left: 2.538845e-03	ci right 2.632908e-03	k: 11635	n:4500000
Cons ci ratio: 1.026448e-01	ci left: 3.073666e-04	ci right 3.408374e-04	k: 1457	n:4500000
KS ci ratio: 8.614729e-04	ci left: 8.211145e-01	ci right 8.218224e-01	k: 3696609	n:4500000
SFMBT2   4500000 perm   10217 sec   (440 perm/sec)   p_kst 8.214687e-01   p_cons 3.237778e-04   p_joint 2.585556e-03

Joint ci ratio: 3.688734e-02	ci left: 2.451704e-03	ci right 2.544058e-03	k: 11264	n:4510000
Cons ci ratio: 1.025043e-01	ci left: 3.075492e-04	ci right 3.409913e-04	k: 1461	n:4510000
KS ci ratio: 8.604702e-04	ci left: 8.211310e-01	ci right 8.218380e-01	k: 3704896	n:4510000
SFMBT2   4510000 perm   10259 sec   (440 perm/sec)   p_kst 8.214847e-01   p_cons 3.239468e-04   p_joint 2.497561e-03

Joint ci ratio: 3.686285e-02	ci left: 2.449568e-03	ci right 2.541779e-03	k: 11279	n:4520000
Cons ci ratio: 1.024342e-01	ci left: 3.073000e-04	ci right 3.406907e-04	k: 1463	n:4520000
KS ci ratio: 8.595573e-04	ci left: 8.211179e-01	ci right 8.218242e-01	k: 3713050	n:4520000
SFMBT2   4520000 perm   10302 sec   (439 perm/sec)   p_kst 8.214712e-01   p_cons 3.236726e-04   p_joint 2.495354e-03

Joint ci ratio: 3.681391e-02	ci left: 2.450722e-03	ci right 2.542851e-03	k: 11309	n:4530000
Cons ci ratio: 1.023644e-01	ci left: 3.070518e-04	ci right 3.403915e-04	k: 1465	n:4530000
KS ci ratio: 8.586498e-04	ci left: 8.211040e-01	ci right 8.218095e-01	k: 3721200	n:4530000
SFMBT2   4530000 perm   10345 sec   (438 perm/sec)   p_kst 8.214570e-01   p_cons 3.233996e-04   p_joint 2.496468e-03

Joint ci ratio: 3.686633e-02	ci left: 2.438340e-03	ci right 2.530137e-03	k: 11277	n:4540000
Cons ci ratio: 1.022598e-01	ci left: 3.070193e-04	ci right 3.403194e-04	k: 1468	n:4540000
KS ci ratio: 8.576854e-04	ci left: 8.211106e-01	ci right 8.218154e-01	k: 3729443	n:4540000
SFMBT2   4540000 perm   10389 sec   (437 perm/sec)   p_kst 8.214632e-01   p_cons 3.233480e-04   p_joint 2.483921e-03

Joint ci ratio: 3.681085e-02	ci left: 2.440385e-03	ci right 2.532118e-03	k: 11311	n:4550000
Cons ci ratio: 1.020862e-01	ci left: 3.074154e-04	ci right 3.406984e-04	k: 1473	n:4550000
KS ci ratio: 8.567710e-04	ci left: 8.211012e-01	ci right 8.218052e-01	k: 3737613	n:4550000
SFMBT2   4550000 perm   10432 sec   (436 perm/sec)   p_kst 8.214534e-01   p_cons 3.237363e-04   p_joint 2.485934e-03

Joint ci ratio: 3.677024e-02	ci left: 2.440465e-03	ci right 2.532098e-03	k: 11336	n:4560000
Cons ci ratio: 1.020170e-01	ci left: 3.071686e-04	ci right 3.404011e-04	k: 1475	n:4560000
KS ci ratio: 8.558250e-04	ci left: 8.211037e-01	ci right 8.218069e-01	k: 3745837	n:4560000
SFMBT2   4560000 perm   10475 sec   (435 perm/sec)   p_kst 8.214555e-01   p_cons 3.234649e-04   p_joint 2.485965e-03

Joint ci ratio: 3.672814e-02	ci left: 2.440762e-03	ci right 2.532299e-03	k: 11362	n:4570000
Cons ci ratio: 1.019825e-01	ci left: 3.067097e-04	ci right 3.398806e-04	k: 1476	n:4570000
KS ci ratio: 8.548961e-04	ci left: 8.211013e-01	ci right 8.218038e-01	k: 3754039	n:4570000
SFMBT2   4570000 perm   10518 sec   (434 perm/sec)   p_kst 8.214527e-01   p_cons 3.229759e-04   p_joint 2.486214e-03

Joint ci ratio: 3.582905e-02	ci left: 2.560060e-03	ci right 2.653672e-03	k: 11938	n:4580000
Cons ci ratio: 1.019135e-01	ci left: 3.064656e-04	ci right 3.395863e-04	k: 1478	n:4580000
KS ci ratio: 8.539633e-04	ci left: 8.211014e-01	ci right 8.218030e-01	k: 3762252	n:4580000
SFMBT2   4580000 perm   10562 sec   (434 perm/sec)   p_kst 8.214524e-01   p_cons 3.227074e-04   p_joint 2.606550e-03

Joint ci ratio: 3.579760e-02	ci left: 2.559016e-03	ci right 2.652506e-03	k: 11959	n:4590000
Cons ci ratio: 1.018791e-01	ci left: 3.060102e-04	ci right 3.390699e-04	k: 1479	n:4590000
KS ci ratio: 8.530405e-04	ci left: 8.210990e-01	ci right 8.217999e-01	k: 3770454	n:4590000
SFMBT2   4590000 perm   10605 sec   (433 perm/sec)   p_kst 8.214497e-01   p_cons 3.222222e-04   p_joint 2.605447e-03

Joint ci ratio: 3.576174e-02	ci left: 2.558624e-03	ci right 2.652004e-03	k: 11983	n:4600000
Cons ci ratio: 1.017760e-01	ci left: 3.059806e-04	ci right 3.390016e-04	k: 1482	n:4600000
KS ci ratio: 8.521276e-04	ci left: 8.210943e-01	ci right 8.217945e-01	k: 3778645	n:4600000
SFMBT2   4600000 perm   10648 sec   (432 perm/sec)   p_kst 8.214446e-01   p_cons 3.221739e-04   p_joint 2.605000e-03

Joint ci ratio: 3.572599e-02	ci left: 2.558233e-03	ci right 2.651504e-03	k: 12007	n:4610000
Cons ci ratio: 1.016732e-01	ci left: 3.059510e-04	ci right 3.389335e-04	k: 1485	n:4610000
KS ci ratio: 8.512428e-04	ci left: 8.210809e-01	ci right 8.217803e-01	k: 3786796	n:4610000
SFMBT2   4610000 perm   10692 sec   (431 perm/sec)   p_kst 8.214308e-01   p_cons 3.221258e-04   p_joint 2.604555e-03

Joint ci ratio: 3.568887e-02	ci left: 2.558059e-03	ci right 2.651224e-03	k: 12032	n:4620000
Cons ci ratio: 1.016049e-01	ci left: 3.057107e-04	ci right 3.386438e-04	k: 1487	n:4620000
KS ci ratio: 8.503175e-04	ci left: 8.210825e-01	ci right 8.217812e-01	k: 3795016	n:4620000
SFMBT2   4620000 perm   10736 sec   (430 perm/sec)   p_kst 8.214320e-01   p_cons 3.218615e-04   p_joint 2.604329e-03

Joint ci ratio: 3.564296e-02	ci left: 2.559170e-03	ci right 2.652253e-03	k: 12063	n:4630000
Cons ci ratio: 1.015026e-01	ci left: 3.056819e-04	ci right 3.385768e-04	k: 1490	n:4630000
KS ci ratio: 8.494052e-04	ci left: 8.210806e-01	ci right 8.217786e-01	k: 3803220	n:4630000
SFMBT2   4630000 perm   10780 sec   (429 perm/sec)   p_kst 8.214298e-01   p_cons 3.218143e-04   p_joint 2.605400e-03

Joint ci ratio: 3.561348e-02	ci left: 2.557926e-03	ci right 2.650886e-03	k: 12083	n:4640000
Cons ci ratio: 1.015027e-01	ci left: 3.050231e-04	ci right 3.378471e-04	k: 1490	n:4640000
KS ci ratio: 8.484671e-04	ci left: 8.210887e-01	ci right 8.217859e-01	k: 3811470	n:4640000
SFMBT2   4640000 perm   10824 sec   (429 perm/sec)   p_kst 8.214375e-01   p_cons 3.211207e-04   p_joint 2.604095e-03

Joint ci ratio: 3.558554e-02	ci left: 2.556475e-03	ci right 2.649308e-03	k: 12102	n:4650000
Cons ci ratio: 1.014347e-01	ci left: 3.047863e-04	ci right 3.375616e-04	k: 1492	n:4650000
KS ci ratio: 8.475558e-04	ci left: 8.210886e-01	ci right 8.217850e-01	k: 3819682	n:4650000
SFMBT2   4650000 perm   10869 sec   (428 perm/sec)   p_kst 8.214370e-01   p_cons 3.208602e-04   p_joint 2.602581e-03

Joint ci ratio: 3.556208e-02	ci left: 2.554392e-03	ci right 2.647086e-03	k: 12118	n:4660000
Cons ci ratio: 1.014007e-01	ci left: 3.043414e-04	ci right 3.370572e-04	k: 1493	n:4660000
KS ci ratio: 8.467105e-04	ci left: 8.210665e-01	ci right 8.217622e-01	k: 3827792	n:4660000
SFMBT2   4660000 perm   10914 sec   (427 perm/sec)   p_kst 8.214146e-01   p_cons 3.203863e-04   p_joint 2.600429e-03

Joint ci ratio: 3.551813e-02	ci left: 2.555289e-03	ci right 2.647899e-03	k: 12148	n:4670000
Cons ci ratio: 1.012315e-01	ci left: 3.047333e-04	ci right 3.374333e-04	k: 1498	n:4670000
KS ci ratio: 8.458116e-04	ci left: 8.210641e-01	ci right 8.217591e-01	k: 3835993	n:4670000
SFMBT2   4670000 perm   10958 sec   (426 perm/sec)   p_kst 8.214118e-01   p_cons 3.207709e-04   p_joint 2.601285e-03

Joint ci ratio: 3.548895e-02	ci left: 2.554064e-03	ci right 2.646553e-03	k: 12168	n:4680000
Cons ci ratio: 1.011303e-01	ci left: 3.047069e-04	ci right 3.373695e-04	k: 1501	n:4680000
KS ci ratio: 8.449180e-04	ci left: 8.210608e-01	ci right 8.217550e-01	k: 3844190	n:4680000
SFMBT2   4680000 perm   11002 sec   (425 perm/sec)   p_kst 8.214081e-01   p_cons 3.207265e-04   p_joint 2.600000e-03

Joint ci ratio: 3.545693e-02	ci left: 2.553268e-03	ci right 2.645642e-03	k: 12190	n:4690000
Cons ci ratio: 1.009624e-01	ci left: 3.050964e-04	ci right 3.377432e-04	k: 1506	n:4690000
KS ci ratio: 8.440315e-04	ci left: 8.210560e-01	ci right 8.217495e-01	k: 3852380	n:4690000
SFMBT2   4690000 perm   11046 sec   (425 perm/sec)   p_kst 8.214030e-01   p_cons 3.211087e-04   p_joint 2.599147e-03

Joint ci ratio: 3.561851e-02	ci left: 2.524638e-03	ci right 2.616402e-03	k: 12080	n:4700000
Cons ci ratio: 1.008620e-01	ci left: 3.050694e-04	ci right 3.376790e-04	k: 1509	n:4700000
KS ci ratio: 8.431857e-04	ci left: 8.210381e-01	ci right 8.217309e-01	k: 3860508	n:4700000
SFMBT2   4700000 perm   11091 sec   (424 perm/sec)   p_kst 8.213847e-01   p_cons 3.210638e-04   p_joint 2.570213e-03

Joint ci ratio: 3.558024e-02	ci left: 2.524749e-03	ci right 2.616416e-03	k: 12106	n:4710000
Cons ci ratio: 1.007620e-01	ci left: 3.050426e-04	ci right 3.376150e-04	k: 1512	n:4710000
KS ci ratio: 8.422876e-04	ci left: 8.210393e-01	ci right 8.217314e-01	k: 3868726	n:4710000
SFMBT2   4710000 perm   11136 sec   (423 perm/sec)   p_kst 8.213856e-01   p_cons 3.210191e-04   p_joint 2.570276e-03

Joint ci ratio: 3.554209e-02	ci left: 2.524860e-03	ci right 2.616430e-03	k: 12132	n:4720000
Cons ci ratio: 1.005959e-01	ci left: 3.054290e-04	ci right 3.379857e-04	k: 1517	n:4720000
KS ci ratio: 8.413638e-04	ci left: 8.210506e-01	ci right 8.217418e-01	k: 3876991	n:4720000
SFMBT2   4720000 perm   11180 sec   (422 perm/sec)   p_kst 8.213964e-01   p_cons 3.213983e-04   p_joint 2.570339e-03

Joint ci ratio: 3.519205e-02	ci left: 2.570233e-03	ci right 2.662513e-03	k: 12374	n:4730000
Cons ci ratio: 1.004636e-01	ci left: 3.056077e-04	ci right 3.381381e-04	k: 1521	n:4730000
KS ci ratio: 8.404764e-04	ci left: 8.210501e-01	ci right 8.217406e-01	k: 3885201	n:4730000
SFMBT2   4730000 perm   11225 sec   (421 perm/sec)   p_kst 8.213956e-01   p_cons 3.215645e-04   p_joint 2.616068e-03

Joint ci ratio: 3.524358e-02	ci left: 2.557282e-03	ci right 2.649234e-03	k: 12338	n:4740000
Cons ci ratio: 1.003648e-01	ci left: 3.055800e-04	ci right 3.380735e-04	k: 1524	n:4740000
KS ci ratio: 8.395664e-04	ci left: 8.210585e-01	ci right 8.217483e-01	k: 3893453	n:4740000
SFMBT2   4740000 perm   11270 sec   (421 perm/sec)   p_kst 8.214036e-01   p_cons 3.215190e-04   p_joint 2.602954e-03

Joint ci ratio: 3.520508e-02	ci left: 2.557533e-03	ci right 2.649391e-03	k: 12365	n:4750000
Cons ci ratio: 1.002662e-01	ci left: 3.055524e-04	ci right 3.380092e-04	k: 1527	n:4750000
KS ci ratio: 8.386876e-04	ci left: 8.210569e-01	ci right 8.217460e-01	k: 3901658	n:4750000
SFMBT2   4750000 perm   11315 sec   (420 perm/sec)   p_kst 8.214017e-01   p_cons 3.214737e-04   p_joint 2.603158e-03

Joint ci ratio: 3.515817e-02	ci left: 2.559032e-03	ci right 2.650819e-03	k: 12398	n:4760000
Cons ci ratio: 1.001025e-01	ci left: 3.059345e-04	ci right 3.383758e-04	k: 1532	n:4760000
KS ci ratio: 8.378337e-04	ci left: 8.210476e-01	ci right 8.217360e-01	k: 3909826	n:4760000
SFMBT2   4760000 perm   11359 sec   (419 perm/sec)   p_kst 8.213920e-01   p_cons 3.218487e-04   p_joint 2.604622e-03

Joint ci ratio: 3.512562e-02	ci left: 2.558446e-03	ci right 2.650126e-03	k: 12421	n:4770000
Cons ci ratio: 1.000373e-01	ci left: 3.057020e-04	ci right 3.380962e-04	k: 1534	n:4770000
KS ci ratio: 8.369562e-04	ci left: 8.210476e-01	ci right 8.217353e-01	k: 3918038	n:4770000
SFMBT2   4770000 perm   11404 sec   (418 perm/sec)   p_kst 8.213916e-01   p_cons 3.215933e-04   p_joint 2.603983e-03

Joint ci ratio: 3.569786e-02	ci left: 2.471395e-03	ci right 2.561427e-03	k: 12027	n:4780000
Cons ci ratio: 9.990720e-02	ci left: 3.058783e-04	ci right 3.382466e-04	k: 1538	n:4780000
KS ci ratio: 8.361136e-04	ci left: 8.210362e-01	ci right 8.217232e-01	k: 3926196	n:4780000
SFMBT2   4780000 perm   11450 sec   (417 perm/sec)   p_kst 8.213799e-01   p_cons 3.217573e-04   p_joint 2.516109e-03

Outputting figure to mutsig2_images.part000000000155/SFMBT2.11_2765_4780000_0.82138_0.00032176_0.0025161.png
                gene_name: SFMBT2
               theta_stop: 0.100 
                    nperm: 4780000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.00032 
      ci_cons_bounds_left: 0.00031 
     ci_cons_bounds_right: 0.00034 
                  p_joint: 0.0025 
     ci_joint_bounds_left: 0.0025 
    ci_joint_bounds_right: 0.0026 

Current progress: 6 percent done.
SEZ6L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.632864e-02	ci left: 6.799240e-01	ci right 6.981658e-01	k: 6891	n:10000
Cons ci ratio: 4.876921e-02	ci left: 3.828123e-01	ci right 4.020504e-01	k: 3924	n:10000
KS ci ratio: 7.067756e-03	ci left: 9.649925e-01	ci right 9.719311e-01	k: 9686	n:10000
SEZ6L   10000 perm   2 sec   (4383 perm/sec)   p_kst 9.686000e-01   p_cons 3.924000e-01   p_joint 6.891000e-01

Outputting figure to mutsig2_images.part000000000155/SEZ6L.10_3143_10000_0.9686_0.3924_0.6891.png
                gene_name: SEZ6L
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 8 percent done.
SETD1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.829904e-02	ci left: 1.304150e-01	ci right 1.439971e-01	k: 1371	n:10000
Cons ci ratio: 2.418322e-01	ci left: 2.249916e-02	ci right 2.878131e-02	k: 255	n:10000
KS ci ratio: 1.027334e-02	ci left: 9.308177e-01	ci right 9.405266e-01	k: 9358	n:10000
SETD1A   10000 perm   2 sec   (4170 perm/sec)   p_kst 9.358000e-01   p_cons 2.550000e-02   p_joint 1.371000e-01

Joint ci ratio: 6.497890e-02	ci left: 1.489245e-01	ci right 1.589763e-01	k: 3078	n:20000
Cons ci ratio: 1.643708e-01	ci left: 2.537344e-02	ci right 2.996526e-02	k: 552	n:20000
KS ci ratio: 7.391266e-03	ci left: 9.301121e-01	ci right 9.370612e-01	k: 18673	n:20000
SETD1A   20000 perm   5 sec   (3802 perm/sec)   p_kst 9.336500e-01   p_cons 2.760000e-02   p_joint 1.539000e-01

Joint ci ratio: 5.258844e-02	ci left: 1.521416e-01	ci right 1.603918e-01	k: 4687	n:30000
Cons ci ratio: 1.362065e-01	ci left: 2.503400e-02	ci right 2.872506e-02	k: 805	n:30000
KS ci ratio: 6.117544e-03	ci left: 9.290246e-01	ci right 9.347581e-01	k: 27958	n:30000
SETD1A   30000 perm   8 sec   (3675 perm/sec)   p_kst 9.319333e-01   p_cons 2.683333e-02   p_joint 1.562333e-01

Joint ci ratio: 4.131649e-02	ci left: 1.798909e-01	ci right 1.875051e-01	k: 7347	n:40000
Cons ci ratio: 1.157990e-01	ci left: 2.623506e-02	ci right 2.948397e-02	k: 1113	n:40000
KS ci ratio: 5.335533e-03	ci left: 9.284977e-01	ci right 9.334895e-01	k: 37241	n:40000
SETD1A   40000 perm   11 sec   (3592 perm/sec)   p_kst 9.310250e-01   p_cons 2.782500e-02   p_joint 1.836750e-01

Joint ci ratio: 3.543607e-02	ci left: 1.931241e-01	ci right 2.001111e-01	k: 9830	n:50000
Cons ci ratio: 1.039393e-01	ci left: 2.622051e-02	ci right 2.911468e-02	k: 1382	n:50000
KS ci ratio: 4.784183e-03	ci left: 9.284388e-01	ci right 9.329110e-01	k: 46535	n:50000
SETD1A   50000 perm   14 sec   (3515 perm/sec)   p_kst 9.307000e-01   p_cons 2.764000e-02   p_joint 1.966000e-01

Joint ci ratio: 2.986357e-02	ci left: 2.197573e-01	ci right 2.264362e-01	k: 13385	n:60000
Cons ci ratio: 9.466651e-02	ci left: 2.646653e-02	ci right 2.911274e-02	k: 1666	n:60000
KS ci ratio: 4.358798e-03	ci left: 9.288920e-01	ci right 9.329662e-01	k: 55857	n:60000
SETD1A   60000 perm   17 sec   (3454 perm/sec)   p_kst 9.309500e-01   p_cons 2.776667e-02   p_joint 2.230833e-01

Outputting figure to mutsig2_images.part000000000155/SETD1A.8_5196_60000_0.93095_0.027767_0.22308.png
                gene_name: SETD1A
               theta_stop: 0.095 
                    nperm: 60000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.028 
      ci_cons_bounds_left: 0.026 
     ci_cons_bounds_right: 0.029 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 10 percent done.
SERPINA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.315575e-02	ci left: 5.731628e-01	ci right 5.925889e-01	k: 5829	n:10000
Cons ci ratio: 1.486641e-02	ci left: 8.676433e-01	ci right 8.807378e-01	k: 8743	n:10000
KS ci ratio: 4.622758e-02	ci left: 4.085072e-01	ci right 4.279405e-01	k: 4182	n:10000
SERPINA4   10000 perm   2 sec   (5614 perm/sec)   p_kst 4.182000e-01   p_cons 8.743000e-01   p_joint 5.829000e-01

Outputting figure to mutsig2_images.part000000000155/SERPINA4.7_1300_10000_0.4182_0.8743_0.5829.png
                gene_name: SERPINA4
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 12 percent done.
SERPINC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.744616e-02	ci left: 5.129549e-01	ci right 5.326318e-01	k: 5228	n:10000
Cons ci ratio: 7.557379e-02	ci left: 2.039253e-01	ci right 2.200428e-01	k: 2119	n:10000
KS ci ratio: 2.678422e-02	ci left: 6.724682e-01	ci right 6.908258e-01	k: 6817	n:10000
SERPINC1   10000 perm   2 sec   (4974 perm/sec)   p_kst 6.817000e-01   p_cons 2.119000e-01   p_joint 5.228000e-01

Outputting figure to mutsig2_images.part000000000155/SERPINC1.7_1423_10000_0.6817_0.2119_0.5228.png
                gene_name: SERPINC1
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 14 percent done.
SERPINA7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.350465e-02	ci left: 5.680480e-01	ci right 5.875066e-01	k: 5778	n:10000
Cons ci ratio: 2.181098e-02	ci left: 7.551466e-01	ci right 7.718996e-01	k: 7636	n:10000
KS ci ratio: 5.714316e-02	ci left: 3.107615e-01	ci right 3.291435e-01	k: 3199	n:10000
SERPINA7   10000 perm   2 sec   (4821 perm/sec)   p_kst 3.199000e-01   p_cons 7.636000e-01   p_joint 5.778000e-01

Outputting figure to mutsig2_images.part000000000155/SERPINA7.6_1264_10000_0.3199_0.7636_0.5778.png
                gene_name: SERPINA7
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 16 percent done.
SERPINB4
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.621682e-02	ci left: 8.468243e-01	ci right 8.607689e-01	k: 8539	n:10000
KS ci ratio: 1.589065e-02	ci left: 8.519224e-01	ci right 8.656679e-01	k: 8589	n:10000
SERPINB4   10000 perm   2 sec   (5671 perm/sec)   p_kst 8.589000e-01   p_cons 8.539000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000155/SERPINB4.5_1201_10000_0.8589_0.8539_1.png
                gene_name: SERPINB4
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 18 percent done.
SETD5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.530440e-02	ci left: 3.250533e-01	ci right 3.436433e-01	k: 3343	n:10000
Cons ci ratio: 7.321256e-02	ci left: 2.145771e-01	ci right 2.309847e-01	k: 2227	n:10000
KS ci ratio: 4.409049e-02	ci left: 4.316360e-01	ci right 4.511982e-01	k: 4414	n:10000
SETD5   10000 perm   2 sec   (4286 perm/sec)   p_kst 4.414000e-01   p_cons 2.227000e-01   p_joint 3.343000e-01

Outputting figure to mutsig2_images.part000000000155/SETD5.6_4413_10000_0.4414_0.2227_0.3343.png
                gene_name: SETD5
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 20 percent done.
SETD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.237387e-01	ci left: 8.552985e-02	ci right 9.690958e-02	k: 911	n:10000
Cons ci ratio: 8.112025e-02	ci left: 1.815648e-01	ci right 1.970166e-01	k: 1892	n:10000
KS ci ratio: 2.236599e-01	ci left: 2.646035e-02	ci right 3.321723e-02	k: 297	n:10000
SETD2   10000 perm   3 sec   (3217 perm/sec)   p_kst 2.970000e-02   p_cons 1.892000e-01   p_joint 9.110000e-02

Joint ci ratio: 1.169904e-01	ci left: 5.003249e-02	ci right 5.629822e-02	k: 1062	n:20000
Cons ci ratio: 5.857647e-02	ci left: 1.775637e-01	ci right 1.883286e-01	k: 3658	n:20000
KS ci ratio: 1.585670e-01	ci left: 2.729474e-02	ci right 3.204331e-02	k: 592	n:20000
SETD2   20000 perm   7 sec   (2975 perm/sec)   p_kst 2.960000e-02   p_cons 1.829000e-01   p_joint 5.310000e-02

Joint ci ratio: 1.154059e-01	ci left: 3.489227e-02	ci right 3.919799e-02	k: 1110	n:30000
Cons ci ratio: 4.780372e-02	ci left: 1.787048e-01	ci right 1.874900e-01	k: 5492	n:30000
KS ci ratio: 1.311124e-01	ci left: 2.703337e-02	ci right 3.085858e-02	k: 867	n:30000
SETD2   30000 perm   10 sec   (2888 perm/sec)   p_kst 2.890000e-02   p_cons 1.830667e-01   p_joint 3.700000e-02

Joint ci ratio: 9.079436e-02	ci left: 4.249988e-02	ci right 4.656658e-02	k: 1780	n:40000
Cons ci ratio: 4.169229e-02	ci left: 1.772129e-01	ci right 1.847835e-01	k: 7239	n:40000
KS ci ratio: 1.124185e-01	ci left: 2.783925e-02	ci right 3.117952e-02	k: 1179	n:40000
SETD2   40000 perm   14 sec   (2838 perm/sec)   p_kst 2.947500e-02   p_cons 1.809750e-01   p_joint 4.450000e-02

Joint ci ratio: 7.495786e-02	ci left: 4.991278e-02	ci right 5.381946e-02	k: 2592	n:50000
Cons ci ratio: 3.648344e-02	ci left: 1.841466e-01	ci right 1.910097e-01	k: 9378	n:50000
KS ci ratio: 1.006559e-01	ci left: 2.795622e-02	ci right 3.093875e-02	k: 1471	n:50000
SETD2   50000 perm   18 sec   (2795 perm/sec)   p_kst 2.942000e-02   p_cons 1.875600e-01   p_joint 5.184000e-02

Joint ci ratio: 7.468383e-02	ci left: 4.225810e-02	ci right 4.555287e-02	k: 2633	n:60000
Cons ci ratio: 3.326069e-02	ci left: 1.848474e-01	ci right 1.911161e-01	k: 11278	n:60000
KS ci ratio: 9.131236e-02	ci left: 2.843761e-02	ci right 3.117479e-02	k: 1787	n:60000
SETD2   60000 perm   22 sec   (2758 perm/sec)   p_kst 2.978333e-02   p_cons 1.879667e-01   p_joint 4.388333e-02

Outputting figure to mutsig2_images.part000000000155/SETD2.5_7779_60000_0.029783_0.18797_0.043883.png
                gene_name: SETD2
               theta_stop: 0.091 
                    nperm: 60000 
                     p_ks: 0.030 
        ci_ks_bounds_left: 0.028 
       ci_ks_bounds_right: 0.031 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.044 
     ci_joint_bounds_left: 0.042 
    ci_joint_bounds_right: 0.046 

Current progress: 22 percent done.
SEZ6L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.623661e-02	ci left: 3.177077e-01	ci right 3.361932e-01	k: 3269	n:10000
Cons ci ratio: 1.150553e-01	ci left: 9.798552e-02	ci right 1.100463e-01	k: 1039	n:10000
KS ci ratio: 6.700260e-03	ci left: 9.682593e-01	ci right 9.748622e-01	k: 9717	n:10000
SEZ6L2   10000 perm   2 sec   (5363 perm/sec)   p_kst 9.717000e-01   p_cons 1.039000e-01   p_joint 3.269000e-01

Joint ci ratio: 4.387662e-02	ci left: 2.789491e-01	ci right 2.915134e-01	k: 5704	n:20000
Cons ci ratio: 8.120554e-02	ci left: 1.000967e-01	ci right 1.086187e-01	k: 2086	n:20000
KS ci ratio: 4.656197e-03	ci left: 9.702427e-01	ci right 9.748185e-01	k: 19452	n:20000
SEZ6L2   20000 perm   4 sec   (4761 perm/sec)   p_kst 9.726000e-01   p_cons 1.043000e-01   p_joint 2.852000e-01

Outputting figure to mutsig2_images.part000000000155/SEZ6L2.5_2844_20000_0.9726_0.1043_0.2852.png
                gene_name: SEZ6L2
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 24 percent done.
SFRS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.812710e-02	ci left: 5.039511e-01	ci right 5.236409e-01	k: 5138	n:10000
Cons ci ratio: 3.234426e-02	ci left: 5.852018e-01	ci right 6.045429e-01	k: 5949	n:10000
KS ci ratio: 5.715629e-02	ci left: 3.106623e-01	ci right 3.290427e-01	k: 3198	n:10000
SFRS1   10000 perm   2 sec   (5516 perm/sec)   p_kst 3.198000e-01   p_cons 5.949000e-01   p_joint 5.138000e-01

Outputting figure to mutsig2_images.part000000000155/SFRS1.5_817_10000_0.3198_0.5949_0.5138.png
                gene_name: SFRS1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 25 percent done.
SERPINA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.028013e-02	ci left: 2.881535e-01	ci right 3.061648e-01	k: 2971	n:10000
Cons ci ratio: 5.472561e-02	ci left: 3.297201e-01	ci right 3.483737e-01	k: 3390	n:10000
KS ci ratio: 6.836926e-02	ci left: 2.388684e-01	ci right 2.558790e-01	k: 2473	n:10000
SERPINA3   10000 perm   2 sec   (5684 perm/sec)   p_kst 2.473000e-01   p_cons 3.390000e-01   p_joint 2.971000e-01

Outputting figure to mutsig2_images.part000000000155/SERPINA3.4_1288_10000_0.2473_0.339_0.2971.png
                gene_name: SERPINA3
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 27 percent done.
SERPINB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.974606e-02	ci left: 1.867820e-01	ci right 2.023963e-01	k: 1945	n:10000
Cons ci ratio: 7.767058e-02	ci left: 1.950552e-01	ci right 2.109182e-01	k: 2029	n:10000
KS ci ratio: 8.994959e-02	ci left: 1.523737e-01	ci right 1.668252e-01	k: 1595	n:10000
SERPINB2   10000 perm   2 sec   (5431 perm/sec)   p_kst 1.595000e-01   p_cons 2.029000e-01   p_joint 1.945000e-01

Outputting figure to mutsig2_images.part000000000155/SERPINB2.4_1276_10000_0.1595_0.2029_0.1945.png
                gene_name: SERPINB2
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 29 percent done.
SERPINB6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.093398e-02	ci left: 7.698255e-01	ci right 7.862122e-01	k: 7781	n:10000
Cons ci ratio: 2.012596e-02	ci left: 7.833022e-01	ci right 7.993277e-01	k: 7914	n:10000
KS ci ratio: 3.130118e-02	ci left: 6.009618e-01	ci right 6.201737e-01	k: 6106	n:10000
SERPINB6   10000 perm   2 sec   (5678 perm/sec)   p_kst 6.106000e-01   p_cons 7.914000e-01   p_joint 7.781000e-01

Outputting figure to mutsig2_images.part000000000155/SERPINB6.4_1155_10000_0.6106_0.7914_0.7781.png
                gene_name: SERPINB6
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 31 percent done.
SERPINI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.357336e-02	ci left: 5.670453e-01	ci right 5.865100e-01	k: 5768	n:10000
Cons ci ratio: 7.949257e-02	ci left: 1.877666e-01	ci right 2.034111e-01	k: 1955	n:10000
KS ci ratio: 2.302394e-02	ci left: 7.348207e-01	ci right 7.520373e-01	k: 7435	n:10000
SERPINI1   10000 perm   2 sec   (5706 perm/sec)   p_kst 7.435000e-01   p_cons 1.955000e-01   p_joint 5.768000e-01

Outputting figure to mutsig2_images.part000000000155/SERPINI1.4_1265_10000_0.7435_0.1955_0.5768.png
                gene_name: SERPINI1
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 33 percent done.
SF3B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.489805e-02	ci left: 5.480002e-01	ci right 5.675661e-01	k: 5578	n:10000
Cons ci ratio: 2.718613e-02	ci left: 6.659215e-01	ci right 6.843764e-01	k: 6752	n:10000
KS ci ratio: 4.926359e-02	ci left: 3.780349e-01	ci right 3.972306e-01	k: 3876	n:10000
SF3B1   10000 perm   2 sec   (4366 perm/sec)   p_kst 3.876000e-01   p_cons 6.752000e-01   p_joint 5.578000e-01

Outputting figure to mutsig2_images.part000000000155/SF3B1.4_4039_10000_0.3876_0.6752_0.5578.png
                gene_name: SF3B1
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 35 percent done.
SF3B2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.100173e-02	ci left: 2.252368e-01	ci right 2.419187e-01	k: 2335	n:10000
Cons ci ratio: 5.369191e-02	ci left: 3.382620e-01	ci right 3.570268e-01	k: 3476	n:10000
KS ci ratio: 1.033792e-01	ci left: 1.191644e-01	ci right 1.322545e-01	k: 1256	n:10000
SF3B2   10000 perm   2 sec   (5040 perm/sec)   p_kst 1.256000e-01   p_cons 3.476000e-01   p_joint 2.335000e-01

Joint ci ratio: 5.873369e-02	ci left: 1.767729e-01	ci right 1.875197e-01	k: 3642	n:20000
Cons ci ratio: 3.728935e-02	ci left: 3.492111e-01	ci right 3.625309e-01	k: 7117	n:20000
KS ci ratio: 7.330167e-02	ci left: 1.204955e-01	ci right 1.297138e-01	k: 2501	n:20000
SF3B2   20000 perm   4 sec   (4607 perm/sec)   p_kst 1.250500e-01   p_cons 3.558500e-01   p_joint 1.821000e-01

Outputting figure to mutsig2_images.part000000000155/SF3B2.4_2776_20000_0.12505_0.35585_0.1821.png
                gene_name: SF3B2
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 37 percent done.
SFI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.023269e-02	ci left: 1.849114e-01	ci right 2.004680e-01	k: 1926	n:10000
Cons ci ratio: 1.099875e-01	ci left: 1.064680e-01	ci right 1.189587e-01	k: 1126	n:10000
KS ci ratio: 5.119552e-02	ci left: 3.600290e-01	ci right 3.790471e-01	k: 3695	n:10000
SFI1   10000 perm   2 sec   (4184 perm/sec)   p_kst 3.695000e-01   p_cons 1.126000e-01   p_joint 1.926000e-01

Joint ci ratio: 6.438674e-02	ci left: 1.512925e-01	ci right 1.614077e-01	k: 3126	n:20000
Cons ci ratio: 7.670452e-02	ci left: 1.110523e-01	ci right 1.199599e-01	k: 2309	n:20000
KS ci ratio: 3.635250e-02	ci left: 3.609125e-01	ci right 3.743260e-01	k: 7352	n:20000
SFI1   20000 perm   5 sec   (3902 perm/sec)   p_kst 3.676000e-01   p_cons 1.154500e-01   p_joint 1.563000e-01

Outputting figure to mutsig2_images.part000000000155/SFI1.4_3857_20000_0.3676_0.11545_0.1563.png
                gene_name: SFI1
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 39 percent done.
SFRP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.099902e-02	ci left: 4.676679e-01	ci right 4.873452e-01	k: 4775	n:10000
Cons ci ratio: 4.974422e-02	ci left: 3.734575e-01	ci right 3.926107e-01	k: 3830	n:10000
KS ci ratio: 5.213117e-02	ci left: 3.516775e-01	ci right 3.706035e-01	k: 3611	n:10000
SFRP4   10000 perm   2 sec   (5774 perm/sec)   p_kst 3.611000e-01   p_cons 3.830000e-01   p_joint 4.775000e-01

Outputting figure to mutsig2_images.part000000000155/SFRP4.4_1065_10000_0.3611_0.383_0.4775.png
                gene_name: SFRP4
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 41 percent done.
SERPINA11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.753630e-02	ci left: 5.117542e-01	ci right 5.314332e-01	k: 5216	n:10000
Cons ci ratio: 2.058215e-02	ci left: 7.757010e-01	ci right 7.919333e-01	k: 7839	n:10000
KS ci ratio: 6.325116e-02	ci left: 2.686408e-01	ci right 2.862890e-01	k: 2774	n:10000
SERPINA11   10000 perm   2 sec   (5905 perm/sec)   p_kst 2.774000e-01   p_cons 7.839000e-01   p_joint 5.216000e-01

Outputting figure to mutsig2_images.part000000000155/SERPINA11.3_1285_10000_0.2774_0.7839_0.5216.png
                gene_name: SERPINA11
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 43 percent done.
SERPINA12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.010744e-02	ci left: 2.893427e-01	ci right 3.073749e-01	k: 2983	n:10000
Cons ci ratio: 1.042826e-01	ci left: 1.173073e-01	ci right 1.303127e-01	k: 1237	n:10000
KS ci ratio: 2.646388e-02	ci left: 6.777071e-01	ci right 6.959839e-01	k: 6869	n:10000
SERPINA12   10000 perm   2 sec   (5990 perm/sec)   p_kst 6.869000e-01   p_cons 1.237000e-01   p_joint 2.983000e-01

Joint ci ratio: 4.278847e-02	ci left: 2.892313e-01	ci right 3.019281e-01	k: 5911	n:20000
Cons ci ratio: 7.070838e-02	ci left: 1.284701e-01	ci right 1.379368e-01	k: 2663	n:20000
KS ci ratio: 1.893338e-02	ci left: 6.753440e-01	ci right 6.883031e-01	k: 13637	n:20000
SERPINA12   20000 perm   4 sec   (5403 perm/sec)   p_kst 6.818500e-01   p_cons 1.331500e-01   p_joint 2.955500e-01

Outputting figure to mutsig2_images.part000000000155/SERPINA12.3_1261_20000_0.68185_0.13315_0.29555.png
                gene_name: SERPINA12
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 45 percent done.
SERPINA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.825167e-02	ci left: 3.878893e-01	ci right 4.071704e-01	k: 3975	n:10000
Cons ci ratio: 9.683164e-02	ci left: 1.339403e-01	ci right 1.476696e-01	k: 1407	n:10000
KS ci ratio: 7.681810e-03	ci left: 9.592178e-01	ci right 9.667094e-01	k: 9631	n:10000
SERPINA5   10000 perm   2 sec   (6105 perm/sec)   p_kst 9.631000e-01   p_cons 1.407000e-01   p_joint 3.975000e-01

Outputting figure to mutsig2_images.part000000000155/SERPINA5.3_1237_10000_0.9631_0.1407_0.3975.png
                gene_name: SERPINA5
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 47 percent done.
SERPINB11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.914040e-02	ci left: 7.996335e-01	ci right 8.151870e-01	k: 8075	n:10000
Cons ci ratio: 1.427232e-02	ci left: 8.765385e-01	ci right 8.892375e-01	k: 8830	n:10000
KS ci ratio: 2.898406e-02	ci left: 6.370387e-01	ci right 6.558759e-01	k: 6465	n:10000
SERPINB11   10000 perm   2 sec   (6069 perm/sec)   p_kst 6.465000e-01   p_cons 8.830000e-01   p_joint 8.075000e-01

Outputting figure to mutsig2_images.part000000000155/SERPINB11.3_1207_10000_0.6465_0.883_0.8075.png
                gene_name: SERPINB11
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 49 percent done.
SERPINB12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.080975e-02	ci left: 6.084942e-01	ci right 6.276370e-01	k: 6181	n:10000
Cons ci ratio: 6.142503e-02	ci left: 2.804252e-01	ci right 2.982977e-01	k: 2893	n:10000
KS ci ratio: 3.056233e-02	ci left: 6.123115e-01	ci right 6.314175e-01	k: 6219	n:10000
SERPINB12   10000 perm   2 sec   (5979 perm/sec)   p_kst 6.219000e-01   p_cons 2.893000e-01   p_joint 6.181000e-01

Outputting figure to mutsig2_images.part000000000155/SERPINB12.3_1244_10000_0.6219_0.2893_0.6181.png
                gene_name: SERPINB12
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 51 percent done.
SERPINB9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.587498e-02	ci left: 6.873824e-01	ci right 7.055030e-01	k: 6965	n:10000
Cons ci ratio: 2.047888e-02	ci left: 7.774236e-01	ci right 7.936097e-01	k: 7856	n:10000
KS ci ratio: 4.103189e-02	ci left: 4.672683e-01	ci right 4.869450e-01	k: 4771	n:10000
SERPINB9   10000 perm   1 sec   (6787 perm/sec)   p_kst 4.771000e-01   p_cons 7.856000e-01   p_joint 6.965000e-01

Outputting figure to mutsig2_images.part000000000155/SERPINB9.3_1155_10000_0.4771_0.7856_0.6965.png
                gene_name: SERPINB9
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 53 percent done.
SERPINF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.467404e-03	ci left: 9.512738e-01	ci right 9.594583e-01	k: 9555	n:10000
KS ci ratio: 2.573434e-02	ci left: 6.897011e-01	ci right 7.077830e-01	k: 6988	n:10000
SERPINF2   10000 perm   2 sec   (5931 perm/sec)   p_kst 6.988000e-01   p_cons 9.555000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000155/SERPINF2.3_1522_10000_0.6988_0.9555_1.png
                gene_name: SERPINF2
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 55 percent done.
SERPING1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.777008e-02	ci left: 5.086527e-01	ci right 5.283365e-01	k: 5185	n:10000
Cons ci ratio: 7.314920e-02	ci left: 2.148731e-01	ci right 2.312886e-01	k: 2230	n:10000
KS ci ratio: 3.375935e-02	ci left: 5.643380e-01	ci right 5.838188e-01	k: 5741	n:10000
SERPING1   10000 perm   2 sec   (5898 perm/sec)   p_kst 5.741000e-01   p_cons 2.230000e-01   p_joint 5.185000e-01

Outputting figure to mutsig2_images.part000000000155/SERPING1.3_1531_10000_0.5741_0.223_0.5185.png
                gene_name: SERPING1
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 57 percent done.
SERPINI2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.912044e-02	ci left: 1.548277e-01	ci right 1.693697e-01	k: 1620	n:10000
Cons ci ratio: 1.620135e-01	ci left: 5.080410e-02	ci right 5.985714e-02	k: 552	n:10000
KS ci ratio: 3.408486e-02	ci left: 5.596260e-01	ci right 5.791336e-01	k: 5694	n:10000
SERPINI2   10000 perm   2 sec   (5834 perm/sec)   p_kst 5.694000e-01   p_cons 5.520000e-02   p_joint 1.620000e-01

Joint ci ratio: 4.160142e-02	ci left: 3.010086e-01	ci right 3.138474e-01	k: 6148	n:20000
Cons ci ratio: 1.133746e-01	ci left: 5.319383e-02	ci right 5.963589e-02	k: 1127	n:20000
KS ci ratio: 2.419661e-02	ci left: 5.605995e-01	ci right 5.743809e-01	k: 11350	n:20000
SERPINI2   20000 perm   4 sec   (5196 perm/sec)   p_kst 5.675000e-01   p_cons 5.635000e-02   p_joint 3.074000e-01

Joint ci ratio: 3.790560e-02	ci left: 2.577926e-01	ci right 2.677867e-01	k: 7883	n:30000
Cons ci ratio: 9.321464e-02	ci left: 5.306606e-02	ci right 5.828707e-02	k: 1669	n:30000
KS ci ratio: 1.986439e-02	ci left: 5.592005e-01	ci right 5.704537e-01	k: 16945	n:30000
SERPINI2   30000 perm   6 sec   (4973 perm/sec)   p_kst 5.648333e-01   p_cons 5.563333e-02   p_joint 2.627667e-01

Outputting figure to mutsig2_images.part000000000155/SERPINI2.3_1250_30000_0.56483_0.055633_0.26277.png
                gene_name: SERPINI2
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.056 
      ci_cons_bounds_left: 0.053 
     ci_cons_bounds_right: 0.058 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 59 percent done.
SESN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.422483e-02	ci left: 4.301399e-01	ci right 4.496951e-01	k: 4399	n:10000
Cons ci ratio: 2.147867e-02	ci left: 7.607128e-01	ci right 7.773302e-01	k: 7691	n:10000
KS ci ratio: 5.806165e-02	ci left: 3.039169e-01	ci right 3.221921e-01	k: 3130	n:10000
SESN1   10000 perm   2 sec   (5912 perm/sec)   p_kst 3.130000e-01   p_cons 7.691000e-01   p_joint 4.399000e-01

Outputting figure to mutsig2_images.part000000000155/SESN1.3_1696_10000_0.313_0.7691_0.4399.png
                gene_name: SESN1
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 61 percent done.
SESN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.712279e-02	ci left: 1.973215e-01	ci right 2.132506e-01	k: 2052	n:10000
Cons ci ratio: 5.309370e-02	ci left: 3.433291e-01	ci right 3.621567e-01	k: 3527	n:10000
KS ci ratio: 7.759865e-02	ci left: 1.953508e-01	ci right 2.112224e-01	k: 2032	n:10000
SESN3   10000 perm   2 sec   (5972 perm/sec)   p_kst 2.032000e-01   p_cons 3.527000e-01   p_joint 2.052000e-01

Outputting figure to mutsig2_images.part000000000155/SESN3.3_1519_10000_0.2032_0.3527_0.2052.png
                gene_name: SESN3
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 63 percent done.
SETD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.900490e-02	ci left: 8.018666e-01	ci right 8.173526e-01	k: 8097	n:10000
Cons ci ratio: 1.980258e-02	ci left: 7.886762e-01	ci right 8.045507e-01	k: 7967	n:10000
KS ci ratio: 4.304220e-02	ci left: 4.435078e-01	ci right 4.631194e-01	k: 4533	n:10000
SETD3   10000 perm   2 sec   (6181 perm/sec)   p_kst 4.533000e-01   p_cons 7.967000e-01   p_joint 8.097000e-01

Outputting figure to mutsig2_images.part000000000155/SETD3.3_1879_10000_0.4533_0.7967_0.8097.png
                gene_name: SETD3
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 65 percent done.
SETD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.216969e-03	ci left: 9.636253e-01	ci right 9.706991e-01	k: 9673	n:10000
KS ci ratio: 5.184518e-03	ci left: 9.801637e-01	ci right 9.853496e-01	k: 9829	n:10000
SETD4   10000 perm   2 sec   (5989 perm/sec)   p_kst 9.829000e-01   p_cons 9.673000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000155/SETD4.3_1386_10000_0.9829_0.9673_1.png
                gene_name: SETD4
               theta_stop: 0.0072 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
SETDB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.487243e-02	ci left: 3.285285e-01	ci right 3.471661e-01	k: 3378	n:10000
Cons ci ratio: 1.005619e-01	ci left: 1.252279e-01	ci right 1.385873e-01	k: 1318	n:10000
KS ci ratio: 2.396621e-02	ci left: 7.190618e-01	ci right 7.366053e-01	k: 7279	n:10000
SETDB1   10000 perm   2 sec   (4746 perm/sec)   p_kst 7.279000e-01   p_cons 1.318000e-01   p_joint 3.378000e-01

Joint ci ratio: 3.044721e-02	ci left: 4.462332e-01	ci right 4.600804e-01	k: 9063	n:20000
Cons ci ratio: 7.357079e-02	ci left: 1.197082e-01	ci right 1.289013e-01	k: 2485	n:20000
KS ci ratio: 1.700044e-02	ci left: 7.204157e-01	ci right 7.328184e-01	k: 14533	n:20000
SETDB1   20000 perm   5 sec   (4341 perm/sec)   p_kst 7.266500e-01   p_cons 1.242500e-01   p_joint 4.531500e-01

Outputting figure to mutsig2_images.part000000000155/SETDB1.3_3960_20000_0.72665_0.12425_0.45315.png
                gene_name: SETDB1
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.46 

Current progress: 69 percent done.
SEZ6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.067289e-02	ci left: 6.106037e-01	ci right 6.297263e-01	k: 6202	n:10000
Cons ci ratio: 5.058591e-02	ci left: 3.655984e-01	ci right 3.846744e-01	k: 3751	n:10000
KS ci ratio: 2.798921e-02	ci left: 6.529346e-01	ci right 6.715708e-01	k: 6623	n:10000
SEZ6   10000 perm   2 sec   (5154 perm/sec)   p_kst 6.623000e-01   p_cons 3.751000e-01   p_joint 6.202000e-01

Outputting figure to mutsig2_images.part000000000155/SEZ6.3_3066_10000_0.6623_0.3751_0.6202.png
                gene_name: SEZ6
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 71 percent done.
SF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.046551e-02	ci left: 1.840255e-01	ci right 1.995545e-01	k: 1917	n:10000
Cons ci ratio: 8.455437e-02	ci left: 1.693677e-01	ci right 1.844210e-01	k: 1768	n:10000
KS ci ratio: 5.895076e-02	ci left: 2.974712e-01	ci right 3.156416e-01	k: 3065	n:10000
SF4   10000 perm   2 sec   (5545 perm/sec)   p_kst 3.065000e-01   p_cons 1.768000e-01   p_joint 1.917000e-01

Outputting figure to mutsig2_images.part000000000155/SF4.3_1994_10000_0.3065_0.1768_0.1917.png
                gene_name: SF4
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 73 percent done.
SFRS11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.698613e-02	ci left: 4.006365e-01	ci right 4.200158e-01	k: 4103	n:10000
Cons ci ratio: 1.104853e-01	ci left: 1.055899e-01	ci right 1.180372e-01	k: 1117	n:10000
KS ci ratio: 2.797044e-02	ci left: 6.532365e-01	ci right 6.718687e-01	k: 6626	n:10000
SFRS11   10000 perm   2 sec   (5811 perm/sec)   p_kst 6.626000e-01   p_cons 1.117000e-01   p_joint 4.103000e-01

Joint ci ratio: 2.984314e-02	ci left: 4.561702e-01	ci right 4.700406e-01	k: 9262	n:20000
Cons ci ratio: 7.834346e-02	ci left: 1.068747e-01	ci right 1.156386e-01	k: 2224	n:20000
KS ci ratio: 2.002265e-02	ci left: 6.504739e-01	ci right 6.636804e-01	k: 13142	n:20000
SFRS11   20000 perm   4 sec   (5214 perm/sec)   p_kst 6.571000e-01   p_cons 1.112000e-01   p_joint 4.631000e-01

Outputting figure to mutsig2_images.part000000000155/SFRS11.3_1503_20000_0.6571_0.1112_0.4631.png
                gene_name: SFRS11
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.47 

Current progress: 75 percent done.
SERINC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.220488e-03	ci left: 9.956027e-01	ci right 9.978928e-01	k: 9969	n:10000
Cons ci ratio: 2.359145e-02	ci left: 7.253233e-01	ci right 7.427402e-01	k: 7341	n:10000
KS ci ratio: 2.610159e-02	ci left: 6.836528e-01	ci right 7.018348e-01	k: 6928	n:10000
SERINC2   10000 perm   2 sec   (6509 perm/sec)   p_kst 6.928000e-01   p_cons 7.341000e-01   p_joint 9.969000e-01

Outputting figure to mutsig2_images.part000000000155/SERINC2.2_1408_10000_0.6928_0.7341_0.9969.png
                gene_name: SERINC2
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1.00 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1.00 

Current progress: 76 percent done.
SERPINA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.357574e-02	ci left: 4.374215e-01	ci right 4.570092e-01	k: 4472	n:10000
Cons ci ratio: 3.875766e-02	ci left: 4.957504e-01	ci right 5.154464e-01	k: 5056	n:10000
KS ci ratio: 6.802223e-02	ci left: 2.407462e-01	ci right 2.578001e-01	k: 2492	n:10000
SERPINA6   10000 perm   2 sec   (6396 perm/sec)   p_kst 2.492000e-01   p_cons 5.056000e-01   p_joint 4.472000e-01

Outputting figure to mutsig2_images.part000000000155/SERPINA6.2_1234_10000_0.2492_0.5056_0.4472.png
                gene_name: SERPINA6
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 78 percent done.
SERPINA9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.767632e-03	ci left: 9.758897e-01	ci right 9.816267e-01	k: 9789	n:10000
Cons ci ratio: 1.634652e-02	ci left: 8.447858e-01	ci right 8.588086e-01	k: 8519	n:10000
KS ci ratio: 1.138375e-01	ci left: 9.993440e-02	ci right 1.120962e-01	k: 1059	n:10000
SERPINA9   10000 perm   2 sec   (6561 perm/sec)   p_kst 1.059000e-01   p_cons 8.519000e-01   p_joint 9.789000e-01

Joint ci ratio: 1.109617e-02	ci left: 8.570410e-01	ci right 8.666536e-01	k: 17238	n:20000
Cons ci ratio: 1.155570e-02	ci left: 8.469518e-01	ci right 8.568456e-01	k: 17039	n:20000
KS ci ratio: 7.970010e-02	ci left: 1.035833e-01	ci right 1.122311e-01	k: 2157	n:20000
SERPINA9   20000 perm   3 sec   (5765 perm/sec)   p_kst 1.078500e-01   p_cons 8.519500e-01   p_joint 8.619000e-01

Outputting figure to mutsig2_images.part000000000155/SERPINA9.2_1328_20000_0.10785_0.85195_0.8619.png
                gene_name: SERPINA9
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 80 percent done.
SERPINB13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.798921e-02	ci left: 6.529346e-01	ci right 6.715708e-01	k: 6623	n:10000
KS ci ratio: 3.710988e-02	ci left: 5.174580e-01	ci right 5.371261e-01	k: 5273	n:10000
SERPINB13   10000 perm   2 sec   (6437 perm/sec)   p_kst 5.273000e-01   p_cons 6.623000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000155/SERPINB13.2_1204_10000_0.5273_0.6623_1.png
                gene_name: SERPINB13
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
SERPINB5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.723172e-01	ci left: 4.494682e-02	ci right 5.351821e-02	k: 491	n:10000
Cons ci ratio: 5.630055e-02	ci left: 3.172115e-01	ci right 3.356897e-01	k: 3264	n:10000
KS ci ratio: 2.809059e-01	ci left: 1.641496e-02	ci right 2.187026e-02	k: 190	n:10000
SERPINB5   10000 perm   2 sec   (6353 perm/sec)   p_kst 1.900000e-02   p_cons 3.264000e-01   p_joint 4.910000e-02

Joint ci ratio: 8.153307e-02	ci left: 9.936033e-02	ci right 1.078553e-01	k: 2071	n:20000
Cons ci ratio: 3.981506e-02	ci left: 3.199022e-01	ci right 3.329483e-01	k: 6528	n:20000
KS ci ratio: 2.007894e-01	ci left: 1.682030e-02	ci right 2.062146e-02	k: 373	n:20000
SERPINB5   20000 perm   4 sec   (5626 perm/sec)   p_kst 1.865000e-02   p_cons 3.264000e-01   p_joint 1.035500e-01

Joint ci ratio: 5.307910e-02	ci left: 1.497347e-01	ci right 1.579324e-01	k: 4614	n:30000
Cons ci ratio: 3.242650e-02	ci left: 3.222229e-01	ci right 3.328772e-01	k: 9826	n:30000
KS ci ratio: 1.589639e-01	ci left: 1.828556e-02	ci right 2.147505e-02	k: 595	n:30000
SERPINB5   30000 perm   6 sec   (5327 perm/sec)   p_kst 1.983333e-02   p_cons 3.275333e-01   p_joint 1.538000e-01

Joint ci ratio: 3.879405e-02	ci left: 1.993900e-01	ci right 2.073031e-01	k: 8133	n:40000
Cons ci ratio: 2.810237e-02	ci left: 3.226271e-01	ci right 3.318480e-01	k: 13089	n:40000
KS ci ratio: 1.389816e-01	ci left: 1.814326e-02	ci right 2.087713e-02	k: 779	n:40000
SERPINB5   40000 perm   8 sec   (5148 perm/sec)   p_kst 1.947500e-02   p_cons 3.272250e-01   p_joint 2.033250e-01

Joint ci ratio: 4.706850e-02	ci left: 1.189453e-01	ci right 1.246987e-01	k: 6090	n:50000
Cons ci ratio: 2.518642e-02	ci left: 3.222304e-01	ci right 3.304698e-01	k: 16317	n:50000
KS ci ratio: 1.248984e-01	ci left: 1.811207e-02	ci right 2.054419e-02	k: 965	n:50000
SERPINB5   50000 perm   10 sec   (4971 perm/sec)   p_kst 1.930000e-02   p_cons 3.263400e-01   p_joint 1.218000e-01

Joint ci ratio: 4.539302e-02	ci left: 1.080350e-01	ci right 1.130694e-01	k: 6632	n:60000
Cons ci ratio: 2.306676e-02	ci left: 3.211694e-01	ci right 3.286809e-01	k: 19495	n:60000
KS ci ratio: 1.142780e-01	ci left: 1.813314e-02	ci right 2.034704e-02	k: 1153	n:60000
SERPINB5   60000 perm   12 sec   (4847 perm/sec)   p_kst 1.921667e-02   p_cons 3.249167e-01   p_joint 1.105333e-01

Joint ci ratio: 3.963324e-02	ci left: 1.201789e-01	ci right 1.250524e-01	k: 8582	n:70000
Cons ci ratio: 2.133158e-02	ci left: 3.219436e-01	ci right 3.288995e-01	k: 22779	n:70000
KS ci ratio: 1.051787e-01	ci left: 1.843281e-02	ci right 2.049301e-02	k: 1361	n:70000
SERPINB5   70000 perm   15 sec   (4733 perm/sec)   p_kst 1.944286e-02   p_cons 3.254143e-01   p_joint 1.226000e-01

Joint ci ratio: 3.943954e-02	ci left: 1.077406e-01	ci right 1.120877e-01	k: 8792	n:80000
Cons ci ratio: 1.998646e-02	ci left: 3.214553e-01	ci right 3.279574e-01	k: 25976	n:80000
KS ci ratio: 9.805131e-02	ci left: 1.862622e-02	ci right 2.055884e-02	k: 1566	n:80000
SERPINB5   80000 perm   17 sec   (4627 perm/sec)   p_kst 1.957500e-02   p_cons 3.247000e-01   p_joint 1.099000e-01

Outputting figure to mutsig2_images.part000000000155/SERPINB5.2_1152_80000_0.019575_0.3247_0.1099.png
                gene_name: SERPINB5
               theta_stop: 0.098 
                    nperm: 80000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.021 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 84 percent done.
SERPINB8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.478503e-02	ci left: 5.496035e-01	ci right 5.691619e-01	k: 5594	n:10000
Cons ci ratio: 5.248318e-02	ci left: 3.485962e-01	ci right 3.674866e-01	k: 3580	n:10000
KS ci ratio: 1.859077e-02	ci left: 8.086701e-01	ci right 8.239452e-01	k: 8164	n:10000
SERPINB8   10000 perm   2 sec   (6636 perm/sec)   p_kst 8.164000e-01   p_cons 3.580000e-01   p_joint 5.594000e-01

Outputting figure to mutsig2_images.part000000000155/SERPINB8.2_1162_10000_0.8164_0.358_0.5594.png
                gene_name: SERPINB8
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 86 percent done.
SERPIND1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.937791e-02	ci left: 3.769402e-01	ci right 3.961259e-01	k: 3865	n:10000
Cons ci ratio: 5.562896e-02	ci left: 3.224721e-01	ci right 3.410260e-01	k: 3317	n:10000
KS ci ratio: 1.051037e-02	ci left: 9.279223e-01	ci right 9.378237e-01	k: 9330	n:10000
SERPIND1   10000 perm   2 sec   (6111 perm/sec)   p_kst 9.330000e-01   p_cons 3.317000e-01   p_joint 3.865000e-01

Outputting figure to mutsig2_images.part000000000155/SERPIND1.2_1516_10000_0.933_0.3317_0.3865.png
                gene_name: SERPIND1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 88 percent done.
SESN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.366475e-02	ci left: 8.854448e-01	ci right 8.977261e-01	k: 8917	n:10000
Cons ci ratio: 8.561466e-02	ci left: 1.658291e-01	ci right 1.807618e-01	k: 1732	n:10000
KS ci ratio: 3.610238e-02	ci left: 5.311724e-01	ci right 5.508037e-01	k: 5410	n:10000
SESN2   10000 perm   2 sec   (6442 perm/sec)   p_kst 5.410000e-01   p_cons 1.732000e-01   p_joint 8.917000e-01

Outputting figure to mutsig2_images.part000000000155/SESN2.2_1483_10000_0.541_0.1732_0.8917.png
                gene_name: SESN2
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 90 percent done.
SF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.975552e-02	ci left: 6.248728e-01	ci right 6.438489e-01	k: 6344	n:10000
Cons ci ratio: 4.304220e-02	ci left: 4.435078e-01	ci right 4.631194e-01	k: 4533	n:10000
KS ci ratio: 5.183877e-02	ci left: 3.542622e-01	ci right 3.732173e-01	k: 3637	n:10000
SF1   10000 perm   2 sec   (5503 perm/sec)   p_kst 3.637000e-01   p_cons 4.533000e-01   p_joint 6.344000e-01

Outputting figure to mutsig2_images.part000000000155/SF1.2_2485_10000_0.3637_0.4533_0.6344.png
                gene_name: SF1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 92 percent done.
SF3A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.525351e-02	ci left: 4.188726e-01	ci right 4.383690e-01	k: 4286	n:10000
Cons ci ratio: 6.608005e-02	ci left: 2.516216e-01	ci right 2.689183e-01	k: 2602	n:10000
KS ci ratio: 1.075182e-02	ci left: 9.249261e-01	ci right 9.350217e-01	k: 9301	n:10000
SF3A2   10000 perm   2 sec   (6104 perm/sec)   p_kst 9.301000e-01   p_cons 2.602000e-01   p_joint 4.286000e-01

Outputting figure to mutsig2_images.part000000000155/SF3A2.2_1427_10000_0.9301_0.2602_0.4286.png
                gene_name: SF3A2
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 94 percent done.
SF3A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.506102e-02	ci left: 5.456958e-01	ci right 5.652719e-01	k: 5555	n:10000
Cons ci ratio: 1.803670e-01	ci left: 4.101996e-02	ci right 4.924766e-02	k: 450	n:10000
KS ci ratio: 1.546220e-02	ci left: 8.585543e-01	ci right 8.720322e-01	k: 8654	n:10000
SF3A3   10000 perm   2 sec   (6115 perm/sec)   p_kst 8.654000e-01   p_cons 4.500000e-02   p_joint 5.555000e-01

Joint ci ratio: 2.341469e-02	ci left: 5.766812e-01	ci right 5.903945e-01	k: 11671	n:20000
Cons ci ratio: 1.295859e-01	ci left: 4.090836e-02	ci right 4.662524e-02	k: 874	n:20000
KS ci ratio: 1.087147e-02	ci left: 8.619110e-01	ci right 8.713821e-01	k: 17334	n:20000
SF3A3   20000 perm   4 sec   (5430 perm/sec)   p_kst 8.667000e-01   p_cons 4.370000e-02   p_joint 5.835500e-01

Joint ci ratio: 1.890351e-02	ci left: 5.834408e-01	ci right 5.946087e-01	k: 17671	n:30000
Cons ci ratio: 1.062952e-01	ci left: 4.105701e-02	ci right 4.569861e-02	k: 1300	n:30000
KS ci ratio: 8.926130e-03	ci left: 8.614859e-01	ci right 8.692432e-01	k: 25962	n:30000
SF3A3   30000 perm   6 sec   (5154 perm/sec)   p_kst 8.654000e-01   p_cons 4.333333e-02   p_joint 5.890333e-01

Joint ci ratio: 1.623310e-02	ci left: 5.882917e-01	ci right 5.979448e-01	k: 23725	n:40000
Cons ci ratio: 9.149554e-02	ci left: 4.186405e-02	ci right 4.590250e-02	k: 1754	n:40000
KS ci ratio: 7.749215e-03	ci left: 8.614354e-01	ci right 8.681616e-01	k: 34593	n:40000
SF3A3   40000 perm   8 sec   (4978 perm/sec)   p_kst 8.648250e-01   p_cons 4.385000e-02   p_joint 5.931250e-01

Outputting figure to mutsig2_images.part000000000155/SF3A3.2_1574_40000_0.86482_0.04385_0.59313.png
                gene_name: SF3A3
               theta_stop: 0.091 
                    nperm: 40000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.044 
      ci_cons_bounds_left: 0.042 
     ci_cons_bounds_right: 0.046 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.60 

Current progress: 96 percent done.
SF3B3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.065557e-02	ci left: 4.718633e-01	ci right 4.915474e-01	k: 4817	n:10000
Cons ci ratio: 1.368595e-02	ci left: 8.851375e-01	ci right 8.974335e-01	k: 8914	n:10000
KS ci ratio: 4.794086e-02	ci left: 3.909759e-01	ci right 4.102820e-01	k: 4006	n:10000
SF3B3   10000 perm   2 sec   (5002 perm/sec)   p_kst 4.006000e-01   p_cons 8.914000e-01   p_joint 4.817000e-01

Outputting figure to mutsig2_images.part000000000155/SF3B3.2_3754_10000_0.4006_0.8914_0.4817.png
                gene_name: SF3B3
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 98 percent done.
SFN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.670990e-02	ci left: 5.228628e-01	ci right 5.425181e-01	k: 5327	n:10000
KS ci ratio: 1.742078e-02	ci left: 8.276794e-01	ci right 8.423249e-01	k: 8351	n:10000
SFN   10000 perm   1 sec   (6922 perm/sec)   p_kst 8.351000e-01   p_cons 5.327000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000155/SFN.2_751_10000_0.8351_0.5327_1.png
                gene_name: SFN
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000155
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 155 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1727>
Subject: Job 8004539: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1727>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000156> was used as the working directory.
Started at Sun Nov 11 15:17:13 2012
Results reported at Sun Nov 11 15:23:15 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000156.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000156.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 156  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000156.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    361.03 sec.
    Max Memory :      4801 MB
    Max Swap   :      7165 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
156
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 156
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 156: processing genes 14024 - 14113
Calculating significance of each gene.
Using projection method.
14024	SFRS12	7.965637e-01
14025	SFRS12IP1	1
14026	SFRS13B	1
14027	SFRS14	9.510042e-01
14028	SFRS15	1
14029	SFRS16	1
14030	SFRS17A	3.174025e-01
14031	SFRS18	9.310178e-01
14032	SFRS2	2.039100e-01
14033	SFRS2B	3.945416e-01
14034	SFRS2IP	9.970896e-01
14035	SFRS3	1
14036	SFRS4	1
14037	SFRS5	1
14038	SFRS6	6.117441e-01
14039	SFRS7	3.094380e-01
14040	SFRS8	9.376438e-01
14041	SFRS9	5.429984e-01
14042	SFT2D1	1
14043	SFT2D2	1
14044	SFTA2	1
14045	SFTA3	1
14046	SFTPA1	5.330685e-01
14047	SFTPA2	8.700618e-02
14048	SFTPB	5.575492e-01
14049	SFTPC	1
14050	SFTPD	7.924106e-01
14051	SFXN1	4.630474e-01
14052	SFXN2	1
14053	SFXN3	3.056059e-01
14054	SFXN4	1
14055	SFXN5	1
14056	SGCA	2.235410e-01
14057	SGCB	1.272003e-01
14058	SGCD	3.620675e-01
14059	SGCE	8.699530e-01
14060	SGCG	3.490418e-01
14061	SGCZ	3.141408e-01
14062	SGEF	2.384953e-01
14063	SGIP1	9.179879e-01
14064	SGK1	9.156699e-01
14065	SGK196	5.622358e-01
14066	SGK2	5.028069e-01
14067	SGK223	6.111841e-01
14068	SGK269	9.335660e-01
14069	SGK3	2.596484e-01
14070	SGK494	1
14071	SGMS1	1.921252e-01
14072	SGMS2	4.985849e-01
14073	SGOL1	1
14074	SGOL2	1
14075	SGPL1	1.924200e-01
14076	SGPP1	3.921535e-01
14077	SGPP2	1
14078	SGSH	8.745266e-01
14079	SGSM1	4.904838e-01
14080	SGSM2	9.669672e-01
14081	SGSM3	9.723594e-01
14082	SGTA	7.126342e-01
14083	SGTB	1
14084	SH2B1	9.020355e-01
14085	SH2B2	4.522819e-01
14086	SH2B3	1
14087	SH2D1A	3.411196e-02
14088	SH2D1B	1
14089	SH2D2A	4.311554e-01
14090	SH2D3A	1
14091	SH2D3C	7.604653e-01
14092	SH2D4A	6.450827e-02
14093	SH2D4B	2.281929e-01
14094	SH2D5	6.948051e-01
14095	SH2D6	1
14096	SH2D7	5.503123e-01
14097	SH3BGR	4.698234e-01
14098	SH3BGRL	1
14099	SH3BGRL2	1
14100	SH3BGRL3	1
14101	SH3BP1	2.336543e-01
14102	SH3BP2	1
14103	SH3BP4	6.266576e-01
14104	SH3BP5	8.100444e-01
14105	SH3BP5L	1
14106	SH3D19	5.117788e-01
14107	SH3GL1	4.630190e-01
14108	SH3GL2	1.641168e-01
14109	SH3GL3	7.503347e-01
14110	SH3GLB1	5.312010e-01
14111	SH3GLB2	1
14112	SH3KBP1	4.838740e-01
14113	SH3PXD2A	9.812916e-01
Done

Running MutSig 2:
Scatter job 156: processing genes 14024 - 14113
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SGIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.598329e-02	ci left: 2.021508e-01	ci right 2.182184e-01	k: 2101	n:10000
Cons ci ratio: 9.113168e-03	ci left: 9.442976e-01	ci right 9.530386e-01	k: 9488	n:10000
KS ci ratio: 1.174650e-01	ci left: 9.428457e-02	ci right 1.061495e-01	k: 1001	n:10000
SGIP1   10000 perm   2 sec   (5090 perm/sec)   p_kst 1.001000e-01   p_cons 9.488000e-01   p_joint 2.101000e-01

Joint ci ratio: 5.555804e-02	ci left: 1.937332e-01	ci right 2.048543e-01	k: 3985	n:20000
Cons ci ratio: 6.401654e-03	ci left: 9.462714e-01	ci right 9.523971e-01	k: 18988	n:20000
KS ci ratio: 8.469174e-02	ci left: 9.263781e-02	ci right 1.008798e-01	k: 1934	n:20000
SGIP1   20000 perm   6 sec   (3158 perm/sec)   p_kst 9.670000e-02   p_cons 9.494000e-01   p_joint 1.992500e-01

Outputting figure to mutsig2_images.part000000000156/SGIP1.12_2587_20000_0.0967_0.9494_0.19925.png
                gene_name: SGIP1
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.097 
        ci_ks_bounds_left: 0.093 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 2 percent done.
SFRS15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.106476e-02	ci left: 6.045771e-01	ci right 6.237564e-01	k: 6142	n:10000
Cons ci ratio: 2.312653e-02	ci left: 7.331027e-01	ci right 7.503563e-01	k: 7418	n:10000
KS ci ratio: 4.553173e-02	ci left: 4.158821e-01	ci right 4.353612e-01	k: 4256	n:10000
SFRS15   10000 perm   2 sec   (5595 perm/sec)   p_kst 4.256000e-01   p_cons 7.418000e-01   p_joint 6.142000e-01

Outputting figure to mutsig2_images.part000000000156/SFRS15.8_3524_10000_0.4256_0.7418_0.6142.png
                gene_name: SFRS15
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 5 percent done.
SGCD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.570466e-02	ci left: 2.537975e-01	ci right 2.711410e-01	k: 2624	n:10000
Cons ci ratio: 9.155892e-02	ci left: 1.477618e-01	ci right 1.620398e-01	k: 1548	n:10000
KS ci ratio: 5.626217e-02	ci left: 3.175092e-01	ci right 3.359918e-01	k: 3267	n:10000
SGCD   10000 perm   2 sec   (6318 perm/sec)   p_kst 3.267000e-01   p_cons 1.548000e-01   p_joint 2.624000e-01

Outputting figure to mutsig2_images.part000000000156/SGCD.8_977_10000_0.3267_0.1548_0.2624.png
                gene_name: SGCD
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 7 percent done.
SGK223
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.641806e-02	ci left: 4.065144e-01	ci right 4.259345e-01	k: 4162	n:10000
KS ci ratio: 1.076832e-02	ci left: 9.247196e-01	ci right 9.348283e-01	k: 9299	n:10000
SGK223   10000 perm   2 sec   (5832 perm/sec)   p_kst 9.299000e-01   p_cons 4.162000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000156/SGK223.6_4229_10000_0.9299_0.4162_1.png
                gene_name: SGK223
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 10 percent done.
SGK269
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.880045e-02	ci left: 6.399554e-01	ci right 6.587575e-01	k: 6494	n:10000
Cons ci ratio: 1.812426e-02	ci left: 8.162904e-01	ci right 8.313205e-01	k: 8239	n:10000
KS ci ratio: 4.059863e-02	ci left: 4.725626e-01	ci right 4.922477e-01	k: 4824	n:10000
SGK269   10000 perm   2 sec   (4944 perm/sec)   p_kst 4.824000e-01   p_cons 8.239000e-01   p_joint 6.494000e-01

Outputting figure to mutsig2_images.part000000000156/SGK269.6_5257_10000_0.4824_0.8239_0.6494.png
                gene_name: SGK269
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 12 percent done.
SGOL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.925084e-02	ci left: 6.328151e-01	ci right 6.517020e-01	k: 6423	n:10000
KS ci ratio: 8.327350e-03	ci left: 9.527344e-01	ci right 9.607967e-01	k: 9569	n:10000
SGOL2   10000 perm   2 sec   (5580 perm/sec)   p_kst 9.569000e-01   p_cons 6.423000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000156/SGOL2.6_3838_10000_0.9569_0.6423_1.png
                gene_name: SGOL2
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 15 percent done.
SFRS14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.144619e-02	ci left: 9.160549e-01	ci right 9.266981e-01	k: 9215	n:10000
KS ci ratio: 1.883211e-02	ci left: 8.047094e-01	ci right 8.201081e-01	k: 8125	n:10000
SFRS14   10000 perm   2 sec   (4496 perm/sec)   p_kst 8.125000e-01   p_cons 9.215000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000156/SFRS14.5_3285_10000_0.8125_0.9215_1.png
                gene_name: SFRS14
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 17 percent done.
SGCZ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.895760e-03	ci left: 9.466899e-01	ci right 9.552449e-01	k: 9511	n:10000
Cons ci ratio: 4.721990e-02	ci left: 3.982459e-01	ci right 4.176078e-01	k: 4079	n:10000
KS ci ratio: 1.548209e-02	ci left: 8.582481e-01	ci right 8.717385e-01	k: 8651	n:10000
SGCZ   10000 perm   1 sec   (7296 perm/sec)   p_kst 8.651000e-01   p_cons 4.079000e-01   p_joint 9.511000e-01

Outputting figure to mutsig2_images.part000000000156/SGCZ.5_971_10000_0.8651_0.4079_0.9511.png
                gene_name: SGCZ
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 20 percent done.
SGEF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.468251e-01	ci left: 2.155910e-02	ci right 2.772208e-02	k: 245	n:10000
Cons ci ratio: 3.415481e-01	ci left: 1.078106e-02	ci right 1.530921e-02	k: 129	n:10000
KS ci ratio: 1.827128e-01	ci left: 3.996794e-02	ci right 4.810038e-02	k: 439	n:10000
SGEF   10000 perm   2 sec   (6444 perm/sec)   p_kst 4.390000e-02   p_cons 1.290000e-02   p_joint 2.450000e-02

Joint ci ratio: 2.458647e-01	ci left: 1.100641e-02	ci right 1.413769e-02	k: 250	n:20000
Cons ci ratio: 2.330359e-01	ci left: 1.232340e-02	ci right 1.562013e-02	k: 278	n:20000
KS ci ratio: 1.278387e-01	ci left: 4.202288e-02	ci right 4.781036e-02	k: 897	n:20000
SGEF   20000 perm   3 sec   (5800 perm/sec)   p_kst 4.485000e-02   p_cons 1.390000e-02   p_joint 1.250000e-02

Joint ci ratio: 1.425090e-01	ci left: 2.284446e-02	ci right 2.638176e-02	k: 737	n:30000
Cons ci ratio: 2.036446e-01	ci left: 1.095686e-02	ci right 1.347226e-02	k: 365	n:30000
KS ci ratio: 1.055343e-01	ci left: 4.164178e-02	ci right 4.631372e-02	k: 1318	n:30000
SGEF   30000 perm   5 sec   (5549 perm/sec)   p_kst 4.393333e-02   p_cons 1.216667e-02   p_joint 2.456667e-02

Joint ci ratio: 2.116838e-01	ci left: 7.599987e-03	ci right 9.422445e-03	k: 339	n:40000
Cons ci ratio: 1.691400e-01	ci left: 1.212844e-02	ci right 1.439304e-02	k: 529	n:40000
KS ci ratio: 9.352007e-02	ci left: 4.010395e-02	ci right 4.406287e-02	k: 1682	n:40000
SGEF   40000 perm   7 sec   (5374 perm/sec)   p_kst 4.205000e-02   p_cons 1.322500e-02   p_joint 8.475000e-03

Joint ci ratio: 1.108506e-01	ci left: 2.304584e-02	ci right 2.576976e-02	k: 1219	n:50000
Cons ci ratio: 1.507657e-01	ci left: 1.233348e-02	ci right 1.436361e-02	k: 666	n:50000
KS ci ratio: 8.385013e-02	ci left: 4.012124e-02	ci right 4.365220e-02	k: 2093	n:50000
SGEF   50000 perm   10 sec   (5235 perm/sec)   p_kst 4.186000e-02   p_cons 1.332000e-02   p_joint 2.438000e-02

Joint ci ratio: 1.003525e-01	ci left: 2.355408e-02	ci right 2.605884e-02	k: 1487	n:60000
Cons ci ratio: 1.391712e-01	ci left: 1.214110e-02	ci right 1.397311e-02	k: 782	n:60000
KS ci ratio: 7.628815e-02	ci left: 4.053973e-02	ci right 4.377141e-02	k: 2528	n:60000
SGEF   60000 perm   12 sec   (5114 perm/sec)   p_kst 4.213333e-02   p_cons 1.303333e-02   p_joint 2.478333e-02

Joint ci ratio: 8.519360e-02	ci left: 2.810504e-02	ci right 3.061989e-02	k: 2054	n:70000
Cons ci ratio: 1.279634e-01	ci left: 1.238144e-02	ci right 1.408783e-02	k: 925	n:70000
KS ci ratio: 7.053564e-02	ci left: 4.076466e-02	ci right 4.375915e-02	k: 2957	n:70000
SGEF   70000 perm   14 sec   (5008 perm/sec)   p_kst 4.224286e-02   p_cons 1.321429e-02   p_joint 2.934286e-02

Joint ci ratio: 9.155774e-02	ci left: 2.137344e-02	ci right 2.343639e-02	k: 1791	n:80000
Cons ci ratio: 1.203509e-01	ci left: 1.229928e-02	ci right 1.388632e-02	k: 1046	n:80000
KS ci ratio: 6.604716e-02	ci left: 4.078032e-02	ci right 4.357800e-02	k: 3373	n:80000
SGEF   80000 perm   16 sec   (4911 perm/sec)   p_kst 4.216250e-02   p_cons 1.307500e-02   p_joint 2.238750e-02

Joint ci ratio: 8.812701e-02	ci left: 2.056229e-02	ci right 2.246873e-02	k: 1935	n:90000
Cons ci ratio: 1.125458e-01	ci left: 1.255094e-02	ci right 1.405845e-02	k: 1196	n:90000
KS ci ratio: 6.232778e-02	ci left: 4.078629e-02	ci right 4.342110e-02	k: 3788	n:90000
SGEF   90000 perm   19 sec   (4817 perm/sec)   p_kst 4.208889e-02   p_cons 1.328889e-02   p_joint 2.150000e-02

Joint ci ratio: 9.024107e-02	ci left: 1.768359e-02	ci right 1.936450e-02	k: 1851	n:100000
Cons ci ratio: 1.070973e-01	ci left: 1.251151e-02	ci right 1.393693e-02	k: 1321	n:100000
KS ci ratio: 5.723903e-02	ci left: 4.351622e-02	ci right 4.609027e-02	k: 4479	n:100000
SGEF   100000 perm   21 sec   (4732 perm/sec)   p_kst 4.479000e-02   p_cons 1.321000e-02   p_joint 1.851000e-02

Joint ci ratio: 8.848933e-02	ci left: 1.675110e-02	ci right 1.831085e-02	k: 1927	n:110000
Cons ci ratio: 1.025501e-01	ci left: 1.243639e-02	ci right 1.378947e-02	k: 1441	n:110000
KS ci ratio: 5.444818e-02	ci left: 4.377342e-02	ci right 4.623246e-02	k: 4949	n:110000
SGEF   110000 perm   24 sec   (4650 perm/sec)   p_kst 4.499091e-02   p_cons 1.310000e-02   p_joint 1.751818e-02

Joint ci ratio: 8.594195e-02	ci left: 1.630874e-02	ci right 1.778139e-02	k: 2044	n:120000
Cons ci ratio: 9.812397e-02	ci left: 1.248056e-02	ci right 1.377646e-02	k: 1574	n:120000
KS ci ratio: 5.229263e-02	ci left: 4.356236e-02	ci right 4.590971e-02	k: 5367	n:120000
SGEF   120000 perm   26 sec   (4575 perm/sec)   p_kst 4.472500e-02   p_cons 1.311667e-02   p_joint 1.703333e-02

Outputting figure to mutsig2_images.part000000000156/SGEF.5_2458_120000_0.044725_0.013117_0.017033.png
                gene_name: SGEF
               theta_stop: 0.098 
                    nperm: 120000 
                     p_ks: 0.045 
        ci_ks_bounds_left: 0.044 
       ci_ks_bounds_right: 0.046 
                   p_cons: 0.013 
      ci_cons_bounds_left: 0.012 
     ci_cons_bounds_right: 0.014 
                  p_joint: 0.017 
     ci_joint_bounds_left: 0.016 
    ci_joint_bounds_right: 0.018 

Current progress: 22 percent done.
SGSM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.882575e-02	ci left: 6.395531e-01	ci right 6.583601e-01	k: 6490	n:10000
Cons ci ratio: 8.426517e-02	ci left: 1.703508e-01	ci right 1.854373e-01	k: 1778	n:10000
KS ci ratio: 1.742078e-02	ci left: 8.276794e-01	ci right 8.423249e-01	k: 8351	n:10000
SGSM1   10000 perm   2 sec   (5565 perm/sec)   p_kst 8.351000e-01   p_cons 1.778000e-01   p_joint 6.490000e-01

Outputting figure to mutsig2_images.part000000000156/SGSM1.5_3551_10000_0.8351_0.1778_0.649.png
                gene_name: SGSM1
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 24 percent done.
SH2D4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.034183e-02	ci left: 6.157275e-01	ci right 6.347995e-01	k: 6253	n:10000
Cons ci ratio: 7.361654e-02	ci left: 2.127026e-01	ci right 2.290604e-01	k: 2208	n:10000
KS ci ratio: 9.962467e-03	ci left: 9.345442e-01	ci right 9.439979e-01	k: 9394	n:10000
SH2D4A   10000 perm   2 sec   (6660 perm/sec)   p_kst 9.394000e-01   p_cons 2.208000e-01   p_joint 6.253000e-01

Outputting figure to mutsig2_images.part000000000156/SH2D4A.5_1451_10000_0.9394_0.2208_0.6253.png
                gene_name: SH2D4A
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.63 

Current progress: 27 percent done.
SFRS2IP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.899868e-02	ci left: 4.926508e-01	ci right 5.123478e-01	k: 5025	n:10000
Cons ci ratio: 1.278700e-01	ci left: 8.038196e-02	ci right 9.146065e-02	k: 858	n:10000
KS ci ratio: 2.081274e-02	ci left: 7.718513e-01	ci right 7.881853e-01	k: 7801	n:10000
SFRS2IP   10000 perm   2 sec   (5382 perm/sec)   p_kst 7.801000e-01   p_cons 8.580000e-02   p_joint 5.025000e-01

Joint ci ratio: 4.509653e-02	ci left: 2.679759e-01	ci right 2.803898e-01	k: 5483	n:20000
Cons ci ratio: 9.566350e-02	ci left: 7.373314e-02	ci right 8.119025e-02	k: 1548	n:20000
KS ci ratio: 1.520480e-02	ci left: 7.627923e-01	ci right 7.745295e-01	k: 15374	n:20000
SFRS2IP   20000 perm   4 sec   (4919 perm/sec)   p_kst 7.687000e-01   p_cons 7.740000e-02   p_joint 2.741500e-01

Outputting figure to mutsig2_images.part000000000156/SFRS2IP.4_4448_20000_0.7687_0.0774_0.27415.png
                gene_name: SFRS2IP
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.077 
      ci_cons_bounds_left: 0.074 
     ci_cons_bounds_right: 0.081 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 29 percent done.
SFTPA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.733377e-02	ci left: 5.144559e-01	ci right 5.341300e-01	k: 5243	n:10000
Cons ci ratio: 6.077436e-02	ci left: 2.847843e-01	ci right 3.027359e-01	k: 2937	n:10000
KS ci ratio: 4.294682e-02	ci left: 4.446055e-01	ci right 4.642211e-01	k: 4544	n:10000
SFTPA1   10000 perm   1 sec   (7041 perm/sec)   p_kst 4.544000e-01   p_cons 2.937000e-01   p_joint 5.243000e-01

Outputting figure to mutsig2_images.part000000000156/SFTPA1.4_812_10000_0.4544_0.2937_0.5243.png
                gene_name: SFTPA1
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 32 percent done.
SGK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.219546e-02	ci left: 2.753738e-01	ci right 2.931520e-01	k: 2842	n:10000
Cons ci ratio: 4.306825e-02	ci left: 4.432085e-01	ci right 4.628189e-01	k: 4530	n:10000
KS ci ratio: 8.133230e-02	ci left: 1.807775e-01	ci right 1.962044e-01	k: 1884	n:10000
SGK1   10000 perm   2 sec   (6185 perm/sec)   p_kst 1.884000e-01   p_cons 4.530000e-01   p_joint 2.842000e-01

Outputting figure to mutsig2_images.part000000000156/SGK1.4_2003_10000_0.1884_0.453_0.2842.png
                gene_name: SGK1
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 34 percent done.
SGPL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.308937e-01	ci left: 7.688883e-02	ci right 8.775595e-02	k: 822	n:10000
Cons ci ratio: 1.566060e-02	ci left: 8.554928e-01	ci right 8.690954e-01	k: 8624	n:10000
KS ci ratio: 1.980390e-01	ci left: 3.395684e-02	ci right 4.151552e-02	k: 376	n:10000
SGPL1   10000 perm   2 sec   (6333 perm/sec)   p_kst 3.760000e-02   p_cons 8.624000e-01   p_joint 8.220000e-02

Joint ci ratio: 1.107455e-01	ci left: 5.567637e-02	ci right 6.225258e-02	k: 1178	n:20000
Cons ci ratio: 1.091376e-02	ci left: 8.609977e-01	ci right 8.704957e-01	k: 17316	n:20000
KS ci ratio: 1.384243e-01	ci left: 3.587580e-02	ci right 4.125942e-02	k: 770	n:20000
SGPL1   20000 perm   4 sec   (5707 perm/sec)   p_kst 3.850000e-02   p_cons 8.658000e-01   p_joint 5.890000e-02

Joint ci ratio: 8.785268e-02	ci left: 5.949284e-02	ci right 6.499231e-02	k: 1866	n:30000
Cons ci ratio: 8.909523e-03	ci left: 8.619244e-01	ci right 8.696712e-01	k: 25975	n:30000
KS ci ratio: 1.147108e-01	ci left: 3.531357e-02	ci right 3.964326e-02	k: 1123	n:30000
SGPL1   30000 perm   5 sec   (5478 perm/sec)   p_kst 3.743333e-02   p_cons 8.658333e-01   p_joint 6.220000e-02

Joint ci ratio: 6.654529e-02	ci left: 7.716248e-02	ci right 8.249870e-02	k: 3192	n:40000
Cons ci ratio: 7.688628e-03	ci left: 8.632794e-01	ci right 8.699673e-01	k: 34666	n:40000
KS ci ratio: 9.936577e-02	ci left: 3.558613e-02	ci right 3.933140e-02	k: 1497	n:40000
SGPL1   40000 perm   8 sec   (5310 perm/sec)   p_kst 3.742500e-02   p_cons 8.666500e-01   p_joint 7.980000e-02

Outputting figure to mutsig2_images.part000000000156/SGPL1.4_1763_40000_0.037425_0.86665_0.0798.png
                gene_name: SGPL1
               theta_stop: 0.099 
                    nperm: 40000 
                     p_ks: 0.037 
        ci_ks_bounds_left: 0.036 
       ci_ks_bounds_right: 0.039 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.080 
     ci_joint_bounds_left: 0.077 
    ci_joint_bounds_right: 0.082 

Current progress: 37 percent done.
SH3BP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.863342e-02	ci left: 2.997517e-01	ci right 3.179597e-01	k: 3088	n:10000
Cons ci ratio: 1.467390e-03	ci left: 9.977780e-01	ci right 9.993076e-01	k: 9987	n:10000
KS ci ratio: 1.044753e-01	ci left: 1.169164e-01	ci right 1.299039e-01	k: 1233	n:10000
SH3BP4   10000 perm   2 sec   (6075 perm/sec)   p_kst 1.233000e-01   p_cons 9.987000e-01   p_joint 3.088000e-01

Joint ci ratio: 5.322437e-02	ci left: 2.076398e-01	ci right 2.190437e-01	k: 4266	n:20000
Cons ci ratio: 9.606565e-04	ci left: 9.982749e-01	ci right 9.992709e-01	k: 19977	n:20000
KS ci ratio: 7.362152e-02	ci left: 1.195606e-01	ci right 1.287490e-01	k: 2482	n:20000
SH3BP4   20000 perm   4 sec   (5469 perm/sec)   p_kst 1.241000e-01   p_cons 9.988500e-01   p_joint 2.133000e-01

Outputting figure to mutsig2_images.part000000000156/SH3BP4.4_2908_20000_0.1241_0.99885_0.2133.png
                gene_name: SH3BP4
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 39 percent done.
SH3D19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.653682e-02	ci left: 1.997852e-01	ci right 2.157854e-01	k: 2077	n:10000
Cons ci ratio: 1.016747e-01	ci left: 1.227823e-01	ci right 1.360344e-01	k: 1293	n:10000
KS ci ratio: 5.206347e-02	ci left: 3.522739e-01	ci right 3.712067e-01	k: 3617	n:10000
SH3D19   10000 perm   2 sec   (6243 perm/sec)   p_kst 3.617000e-01   p_cons 1.293000e-01   p_joint 2.077000e-01

Joint ci ratio: 4.775491e-02	ci left: 2.459447e-01	ci right 2.580274e-01	k: 5039	n:20000
Cons ci ratio: 6.956788e-02	ci left: 1.322134e-01	ci right 1.417924e-01	k: 2739	n:20000
KS ci ratio: 3.683026e-02	ci left: 3.548870e-01	ci right 3.682533e-01	k: 7231	n:20000
SH3D19   20000 perm   4 sec   (5599 perm/sec)   p_kst 3.615500e-01   p_cons 1.369500e-01   p_joint 2.519500e-01

Outputting figure to mutsig2_images.part000000000156/SH3D19.4_2433_20000_0.36155_0.13695_0.25195.png
                gene_name: SH3D19
               theta_stop: 0.070 
                    nperm: 20000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 41 percent done.
SH3KBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.392995e-02	ci left: 4.334314e-01	ci right 4.530017e-01	k: 4432	n:10000
Cons ci ratio: 9.707249e-02	ci left: 1.333527e-01	ci right 1.470577e-01	k: 1401	n:10000
KS ci ratio: 2.721712e-02	ci left: 6.654179e-01	ci right 6.838802e-01	k: 6747	n:10000
SH3KBP1   10000 perm   2 sec   (6177 perm/sec)   p_kst 6.747000e-01   p_cons 1.401000e-01   p_joint 4.432000e-01

Outputting figure to mutsig2_images.part000000000156/SH3KBP1.4_2141_10000_0.6747_0.1401_0.4432.png
                gene_name: SH3KBP1
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 44 percent done.
SH3PXD2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.176235e-03	ci left: 9.984243e-01	ci right 9.996546e-01	k: 9992	n:10000
KS ci ratio: 2.814575e-02	ci left: 6.504187e-01	ci right 6.690882e-01	k: 6598	n:10000
SH3PXD2A   10000 perm   2 sec   (5924 perm/sec)   p_kst 6.598000e-01   p_cons 9.992000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000156/SH3PXD2A.4_3374_10000_0.6598_0.9992_1.png
                gene_name: SH3PXD2A
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 46 percent done.
SFRS17A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.579820e-02	ci left: 5.353783e-01	ci right 5.549953e-01	k: 5452	n:10000
Cons ci ratio: 7.808098e-02	ci left: 1.933804e-01	ci right 2.091940e-01	k: 2012	n:10000
KS ci ratio: 1.527596e-02	ci left: 8.614127e-01	ci right 8.747721e-01	k: 8682	n:10000
SFRS17A   10000 perm   2 sec   (6664 perm/sec)   p_kst 8.682000e-01   p_cons 2.012000e-01   p_joint 5.452000e-01

Outputting figure to mutsig2_images.part000000000156/SFRS17A.3_2104_10000_0.8682_0.2012_0.5452.png
                gene_name: SFRS17A
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.55 

Current progress: 49 percent done.
SFTPA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.650160e-02	ci left: 8.423403e-01	ci right 8.564555e-01	k: 8495	n:10000
KS ci ratio: 1.661111e-02	ci left: 8.406084e-01	ci right 8.547884e-01	k: 8478	n:10000
SFTPA2   10000 perm   1 sec   (7152 perm/sec)   p_kst 8.478000e-01   p_cons 8.495000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000156/SFTPA2.3_763_10000_0.8478_0.8495_1.png
                gene_name: SFTPA2
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 51 percent done.
SGCA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.833270e-02	ci left: 3.019334e-01	ci right 3.201768e-01	k: 3110	n:10000
Cons ci ratio: 8.467404e-03	ci left: 9.512738e-01	ci right 9.594583e-01	k: 9555	n:10000
KS ci ratio: 1.407264e-01	ci left: 6.691220e-02	ci right 7.713880e-02	k: 719	n:10000
SGCA   10000 perm   1 sec   (7025 perm/sec)   p_kst 7.190000e-02   p_cons 9.555000e-01   p_joint 3.110000e-01

Joint ci ratio: 5.900119e-02	ci left: 1.754386e-01	ci right 1.861544e-01	k: 3615	n:20000
Cons ci ratio: 6.085839e-03	ci left: 9.510565e-01	ci right 9.569106e-01	k: 19081	n:20000
KS ci ratio: 9.837429e-02	ci left: 6.992060e-02	ci right 7.720396e-02	k: 1470	n:20000
SGCA   20000 perm   3 sec   (6315 perm/sec)   p_kst 7.350000e-02   p_cons 9.540500e-01   p_joint 1.807500e-01

Outputting figure to mutsig2_images.part000000000156/SGCA.3_1200_20000_0.0735_0.95405_0.18075.png
                gene_name: SGCA
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.073 
        ci_ks_bounds_left: 0.070 
       ci_ks_bounds_right: 0.077 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 54 percent done.
SGCB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.030254e-02	ci left: 7.803626e-01	ci right 7.964690e-01	k: 7885	n:10000
Cons ci ratio: 8.971858e-03	ci left: 9.458575e-01	ci right 9.544778e-01	k: 9503	n:10000
KS ci ratio: 3.618240e-02	ci left: 5.300710e-01	ci right 5.497057e-01	k: 5399	n:10000
SGCB   10000 perm   1 sec   (7322 perm/sec)   p_kst 5.399000e-01   p_cons 9.503000e-01   p_joint 7.885000e-01

Outputting figure to mutsig2_images.part000000000156/SGCB.3_981_10000_0.5399_0.9503_0.7885.png
                gene_name: SGCB
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 56 percent done.
SGK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.056825e-02	ci left: 2.274091e-01	ci right 2.441451e-01	k: 2357	n:10000
Cons ci ratio: 9.631476e-02	ci left: 1.352137e-01	ci right 1.489955e-01	k: 1420	n:10000
KS ci ratio: 6.606290e-02	ci left: 2.517205e-01	ci right 2.690193e-01	k: 2603	n:10000
SGK3   10000 perm   1 sec   (6888 perm/sec)   p_kst 2.603000e-01   p_cons 1.420000e-01   p_joint 2.357000e-01

Outputting figure to mutsig2_images.part000000000156/SGK3.3_1555_10000_0.2603_0.142_0.2357.png
                gene_name: SGK3
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 59 percent done.
SGMS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.363793e-02	ci left: 2.126039e-01	ci right 2.289591e-01	k: 2207	n:10000
Cons ci ratio: 3.783820e-02	ci left: 5.077523e-01	ci right 5.274374e-01	k: 5176	n:10000
KS ci ratio: 1.024032e-01	ci left: 1.212176e-01	ci right 1.344000e-01	k: 1277	n:10000
SGMS1   10000 perm   1 sec   (6878 perm/sec)   p_kst 1.277000e-01   p_cons 5.176000e-01   p_joint 2.207000e-01

Joint ci ratio: 6.616409e-02	ci left: 1.443378e-01	ci right 1.542644e-01	k: 2985	n:20000
Cons ci ratio: 2.706729e-02	ci left: 5.048961e-01	ci right 5.188004e-01	k: 10237	n:20000
KS ci ratio: 7.244374e-02	ci left: 1.230546e-01	ci right 1.323539e-01	k: 2553	n:20000
SGMS1   20000 perm   3 sec   (6487 perm/sec)   p_kst 1.276500e-01   p_cons 5.118500e-01   p_joint 1.492500e-01

Outputting figure to mutsig2_images.part000000000156/SGMS1.3_1262_20000_0.12765_0.51185_0.14925.png
                gene_name: SGMS1
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 61 percent done.
SH2D3C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.736596e-03	ci left: 9.679427e-01	ci right 9.745790e-01	k: 9714	n:10000
KS ci ratio: 3.310124e-02	ci left: 5.739652e-01	ci right 5.933860e-01	k: 5837	n:10000
SH2D3C   10000 perm   2 sec   (6294 perm/sec)   p_kst 5.837000e-01   p_cons 9.714000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000156/SH2D3C.3_2764_10000_0.5837_0.9714_1.png
                gene_name: SH2D3C
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 63 percent done.
SH3BP1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.074492e-02	ci left: 2.265204e-01	ci right 2.432343e-01	k: 2348	n:10000
KS ci ratio: 3.406402e-02	ci left: 5.599267e-01	ci right 5.794327e-01	k: 5697	n:10000
SH3BP1   10000 perm   1 sec   (6862 perm/sec)   p_kst 5.697000e-01   p_cons 2.348000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000156/SH3BP1.2_2178_10000_0.5697_0.2348_1.png
                gene_name: SH3BP1
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 66 percent done.
SH3GL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.113958e-03	ci left: 9.645717e-01	ci right 9.715522e-01	k: 9682	n:10000
Cons ci ratio: 6.614875e-02	ci left: 2.512260e-01	ci right 2.685141e-01	k: 2598	n:10000
KS ci ratio: 1.581851e-02	ci left: 8.530443e-01	ci right 8.667453e-01	k: 8600	n:10000
SH3GL2   10000 perm   1 sec   (7320 perm/sec)   p_kst 8.600000e-01   p_cons 2.598000e-01   p_joint 9.682000e-01

Outputting figure to mutsig2_images.part000000000156/SH3GL2.3_1095_10000_0.86_0.2598_0.9682.png
                gene_name: SH3GL2
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 68 percent done.
SFRS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.366514e-02	ci left: 1.724157e-01	ci right 1.875712e-01	k: 1799	n:10000
Cons ci ratio: 2.928904e-02	ci left: 6.322118e-01	ci right 6.511057e-01	k: 6417	n:10000
KS ci ratio: 1.077377e-01	ci left: 1.105672e-01	ci right 1.232569e-01	k: 1168	n:10000
SFRS2   10000 perm   1 sec   (7783 perm/sec)   p_kst 1.168000e-01   p_cons 6.417000e-01   p_joint 1.799000e-01

Joint ci ratio: 1.100981e-02	ci left: 8.589177e-01	ci right 8.684763e-01	k: 17275	n:20000
Cons ci ratio: 2.049122e-02	ci left: 6.399291e-01	ci right 6.532283e-01	k: 12932	n:20000
KS ci ratio: 7.581674e-02	ci left: 1.134122e-01	ci right 1.223992e-01	k: 2357	n:20000
SFRS2   20000 perm   3 sec   (6861 perm/sec)   p_kst 1.178500e-01   p_cons 6.466000e-01   p_joint 8.637500e-01

Outputting figure to mutsig2_images.part000000000156/SFRS2.2_674_20000_0.11785_0.6466_0.86375.png
                gene_name: SFRS2
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 71 percent done.
SFRS7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.035121e-02	ci left: 7.795518e-01	ci right 7.956803e-01	k: 7877	n:10000
Cons ci ratio: 6.927536e-03	ci left: 9.662559e-01	ci right 9.730668e-01	k: 9698	n:10000
KS ci ratio: 8.033598e-02	ci left: 1.845176e-01	ci right 2.000620e-01	k: 1922	n:10000
SFRS7   10000 perm   1 sec   (7641 perm/sec)   p_kst 1.922000e-01   p_cons 9.698000e-01   p_joint 7.877000e-01

Outputting figure to mutsig2_images.part000000000156/SFRS7.2_749_10000_0.1922_0.9698_0.7877.png
                gene_name: SFRS7
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 73 percent done.
SFRS8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.125218e-01	ci left: 2.939568e-02	ci right 3.647982e-02	k: 328	n:10000
Cons ci ratio: 1.285176e-02	ci left: 8.970314e-01	ci right 9.087327e-01	k: 9030	n:10000
KS ci ratio: 2.339773e-01	ci left: 2.410011e-02	ci right 3.057918e-02	k: 272	n:10000
SFRS8   10000 perm   2 sec   (6518 perm/sec)   p_kst 2.720000e-02   p_cons 9.030000e-01   p_joint 3.280000e-02

Joint ci ratio: 1.582921e-01	ci left: 2.739088e-02	ci right 3.214714e-02	k: 594	n:20000
Cons ci ratio: 9.442281e-03	ci left: 8.917376e-01	ci right 9.002469e-01	k: 17921	n:20000
KS ci ratio: 1.683252e-01	ci left: 2.417421e-02	ci right 2.866491e-02	k: 527	n:20000
SFRS8   20000 perm   3 sec   (5828 perm/sec)   p_kst 2.635000e-02   p_cons 8.960500e-01   p_joint 2.970000e-02

Joint ci ratio: 1.164992e-01	ci left: 3.424427e-02	ci right 3.851279e-02	k: 1090	n:30000
Cons ci ratio: 7.766344e-03	ci left: 8.911379e-01	ci right 8.981188e-01	k: 26840	n:30000
KS ci ratio: 1.365551e-01	ci left: 2.490510e-02	ci right 2.858732e-02	k: 801	n:30000
SFRS8   30000 perm   5 sec   (5558 perm/sec)   p_kst 2.670000e-02   p_cons 8.946667e-01   p_joint 3.633333e-02

Joint ci ratio: 5.522332e-02	ci left: 1.087770e-01	ci right 1.149794e-01	k: 4474	n:40000
Cons ci ratio: 6.504743e-03	ci left: 8.978289e-01	ci right 9.037128e-01	k: 36032	n:40000
KS ci ratio: 1.188520e-01	ci left: 2.489938e-02	ci right 2.806987e-02	k: 1058	n:40000
SFRS8   40000 perm   7 sec   (5339 perm/sec)   p_kst 2.645000e-02   p_cons 9.008000e-01   p_joint 1.118500e-01

Joint ci ratio: 4.167903e-02	ci left: 1.471780e-01	ci right 1.534627e-01	k: 7515	n:50000
Cons ci ratio: 5.804904e-03	ci left: 8.985512e-01	ci right 9.038021e-01	k: 45060	n:50000
KS ci ratio: 1.065426e-01	ci left: 2.495385e-02	ci right 2.778150e-02	k: 1317	n:50000
SFRS8   50000 perm   10 sec   (5220 perm/sec)   p_kst 2.634000e-02   p_cons 9.012000e-01   p_joint 1.503000e-01

Joint ci ratio: 3.596144e-02	ci left: 1.623192e-01	ci right 1.682799e-01	k: 9917	n:60000
Cons ci ratio: 5.280211e-03	ci left: 8.994248e-01	ci right 9.042030e-01	k: 54110	n:60000
KS ci ratio: 9.718413e-02	ci left: 2.511552e-02	ci right 2.769723e-02	k: 1583	n:60000
SFRS8   60000 perm   12 sec   (5081 perm/sec)   p_kst 2.638333e-02   p_cons 9.018333e-01   p_joint 1.652833e-01

Outputting figure to mutsig2_images.part000000000156/SFRS8.2_2928_60000_0.026383_0.90183_0.16528.png
                gene_name: SFRS8
               theta_stop: 0.097 
                    nperm: 60000 
                     p_ks: 0.026 
        ci_ks_bounds_left: 0.025 
       ci_ks_bounds_right: 0.028 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 76 percent done.
SFXN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.406538e-02	ci left: 2.635927e-01	ci right 2.811401e-01	k: 2723	n:10000
KS ci ratio: 1.184452e-02	ci left: 9.108030e-01	ci right 9.217531e-01	k: 9164	n:10000
SFXN3   10000 perm   1 sec   (7547 perm/sec)   p_kst 9.164000e-01   p_cons 2.723000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000156/SFXN3.2_1022_10000_0.9164_0.2723_1.png
                gene_name: SFXN3
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
SGCG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.387610e-03	ci left: 9.521083e-01	ci right 9.602233e-01	k: 9563	n:10000
Cons ci ratio: 3.847191e-02	ci left: 4.994504e-01	ci right 5.191442e-01	k: 5093	n:10000
KS ci ratio: 3.449668e-02	ci left: 5.537122e-01	ci right 5.732508e-01	k: 5635	n:10000
SGCG   10000 perm   1 sec   (7453 perm/sec)   p_kst 5.635000e-01   p_cons 5.093000e-01   p_joint 9.563000e-01

Outputting figure to mutsig2_images.part000000000156/SGCG.2_904_10000_0.5635_0.5093_0.9563.png
                gene_name: SGCG
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 80 percent done.
SGK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.847396e-02	ci left: 3.856991e-01	ci right 4.049619e-01	k: 3953	n:10000
KS ci ratio: 3.304679e-02	ci left: 5.747677e-01	ci right 5.941831e-01	k: 5845	n:10000
SGK2   10000 perm   1 sec   (7704 perm/sec)   p_kst 5.845000e-01   p_cons 3.953000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000156/SGK2.2_1332_10000_0.5845_0.3953_1.png
                gene_name: SGK2
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
SGPP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.583643e-01	ci left: 1.958938e-02	ci right 2.549330e-02	k: 224	n:10000
Cons ci ratio: 1.406212e-01	ci left: 6.700893e-02	ci right 7.724202e-02	k: 720	n:10000
KS ci ratio: 1.446619e-01	ci left: 6.343206e-02	ci right 7.342113e-02	k: 683	n:10000
SGPP1   10000 perm   1 sec   (7326 perm/sec)   p_kst 6.830000e-02   p_cons 7.200000e-02   p_joint 2.240000e-02

Joint ci ratio: 1.741732e-01	ci left: 2.254539e-02	ci right 2.689429e-02	k: 493	n:20000
Cons ci ratio: 9.688928e-02	ci left: 7.197315e-02	ci right 7.935078e-02	k: 1512	n:20000
KS ci ratio: 1.017359e-01	ci left: 6.557403e-02	ci right 7.265187e-02	k: 1381	n:20000
SGPP1   20000 perm   3 sec   (6468 perm/sec)   p_kst 6.905000e-02   p_cons 7.560000e-02   p_joint 2.465000e-02

Joint ci ratio: 1.419187e-01	ci left: 2.303750e-02	ci right 2.658867e-02	k: 743	n:30000
Cons ci ratio: 7.942309e-02	ci left: 7.210954e-02	ci right 7.810639e-02	k: 2252	n:30000
KS ci ratio: 8.266141e-02	ci left: 6.684362e-02	ci right 7.264003e-02	k: 2091	n:30000
SGPP1   30000 perm   5 sec   (6136 perm/sec)   p_kst 6.970000e-02   p_cons 7.506667e-02   p_joint 2.476667e-02

Joint ci ratio: 1.291868e-01	ci left: 2.104469e-02	ci right 2.397520e-02	k: 899	n:40000
Cons ci ratio: 6.842620e-02	ci left: 7.322456e-02	ci right 7.843721e-02	k: 3032	n:40000
KS ci ratio: 7.164698e-02	ci left: 6.712503e-02	ci right 7.213766e-02	k: 2784	n:40000
SGPP1   40000 perm   7 sec   (5923 perm/sec)   p_kst 6.960000e-02   p_cons 7.580000e-02   p_joint 2.247500e-02

Joint ci ratio: 1.673057e-01	ci left: 9.950851e-03	ci right 1.178660e-02	k: 542	n:50000
Cons ci ratio: 6.153893e-02	ci left: 7.274547e-02	ci right 7.738401e-02	k: 3752	n:50000
KS ci ratio: 6.405595e-02	ci left: 6.744364e-02	ci right 7.192648e-02	k: 3483	n:50000
SGPP1   50000 perm   9 sec   (5766 perm/sec)   p_kst 6.966000e-02   p_cons 7.504000e-02   p_joint 1.084000e-02

Joint ci ratio: 1.503669e-01	ci left: 1.035728e-02	ci right 1.205716e-02	k: 671	n:60000
Cons ci ratio: 5.606688e-02	ci left: 7.321730e-02	ci right 7.745722e-02	k: 4519	n:60000
KS ci ratio: 5.815259e-02	ci left: 6.834909e-02	ci right 7.245925e-02	k: 4223	n:60000
SGPP1   60000 perm   11 sec   (5622 perm/sec)   p_kst 7.038333e-02   p_cons 7.531667e-02   p_joint 1.118333e-02

Joint ci ratio: 1.252498e-01	ci left: 1.293500e-02	ci right 1.467708e-02	k: 965	n:70000
Cons ci ratio: 5.182469e-02	ci left: 7.359567e-02	ci right 7.752532e-02	k: 5288	n:70000
KS ci ratio: 5.394495e-02	ci left: 6.824755e-02	ci right 7.204532e-02	k: 4909	n:70000
SGPP1   70000 perm   13 sec   (5491 perm/sec)   p_kst 7.012857e-02   p_cons 7.554286e-02   p_joint 1.378571e-02

Joint ci ratio: 1.169995e-01	ci left: 1.302730e-02	ci right 1.465824e-02	k: 1106	n:80000
Cons ci ratio: 4.866321e-02	ci left: 7.319637e-02	ci right 7.685952e-02	k: 6001	n:80000
KS ci ratio: 5.048719e-02	ci left: 6.830309e-02	ci right 7.185317e-02	k: 5605	n:80000
SGPP1   80000 perm   15 sec   (5341 perm/sec)   p_kst 7.006250e-02   p_cons 7.501250e-02   p_joint 1.382500e-02

Joint ci ratio: 1.099674e-01	ci left: 1.315607e-02	ci right 1.469772e-02	k: 1252	n:90000
Cons ci ratio: 4.565484e-02	ci left: 7.397999e-02	ci right 7.744742e-02	k: 6813	n:90000
KS ci ratio: 4.731303e-02	ci left: 6.918754e-02	ci right 7.255130e-02	k: 6377	n:90000
SGPP1   90000 perm   17 sec   (5235 perm/sec)   p_kst 7.085556e-02   p_cons 7.570000e-02   p_joint 1.391111e-02

Joint ci ratio: 1.045232e-01	ci left: 1.314453e-02	ci right 1.460387e-02	k: 1386	n:100000
Cons ci ratio: 4.327217e-02	ci left: 7.419656e-02	ci right 7.748809e-02	k: 7583	n:100000
KS ci ratio: 4.492833e-02	ci left: 6.914848e-02	ci right 7.233647e-02	k: 7073	n:100000
SGPP1   100000 perm   19 sec   (5135 perm/sec)   p_kst 7.073000e-02   p_cons 7.583000e-02   p_joint 1.386000e-02

Joint ci ratio: 9.984834e-02	ci left: 1.312776e-02	ci right 1.451623e-02	k: 1519	n:110000
Cons ci ratio: 4.123007e-02	ci left: 7.436860e-02	ci right 7.750835e-02	k: 8352	n:110000
KS ci ratio: 4.296360e-02	ci left: 6.884102e-02	ci right 7.187259e-02	k: 7738	n:110000
SGPP1   110000 perm   22 sec   (5047 perm/sec)   p_kst 7.034545e-02   p_cons 7.592727e-02   p_joint 1.380909e-02

Outputting figure to mutsig2_images.part000000000156/SGPP1.2_1338_110000_0.070345_0.075927_0.013809.png
                gene_name: SGPP1
               theta_stop: 0.100 
                    nperm: 110000 
                     p_ks: 0.070 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.072 
                   p_cons: 0.076 
      ci_cons_bounds_left: 0.074 
     ci_cons_bounds_right: 0.078 
                  p_joint: 0.014 
     ci_joint_bounds_left: 0.013 
    ci_joint_bounds_right: 0.015 

Current progress: 85 percent done.
SH2D1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.274638e-02	ci left: 7.394702e-01	ci right 7.565851e-01	k: 7481	n:10000
Cons ci ratio: 1.310673e-01	ci left: 7.669486e-02	ci right 8.755004e-02	k: 820	n:10000
KS ci ratio: 4.898462e-02	ci left: 3.807221e-01	ci right 3.999419e-01	k: 3903	n:10000
SH2D1A   10000 perm   1 sec   (7956 perm/sec)   p_kst 3.903000e-01   p_cons 8.200000e-02   p_joint 7.481000e-01

Joint ci ratio: 1.474675e-02	ci left: 7.735879e-01	ci right 7.851307e-01	k: 15588	n:20000
Cons ci ratio: 9.333221e-02	ci left: 7.725487e-02	ci right 8.486745e-02	k: 1620	n:20000
KS ci ratio: 3.465895e-02	ci left: 3.832815e-01	ci right 3.968505e-01	k: 7801	n:20000
SH2D1A   20000 perm   3 sec   (6920 perm/sec)   p_kst 3.900500e-01   p_cons 8.100000e-02   p_joint 7.794000e-01

Outputting figure to mutsig2_images.part000000000156/SH2D1A.2_403_20000_0.39005_0.081_0.7794.png
                gene_name: SH2D1A
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.081 
      ci_cons_bounds_left: 0.077 
     ci_cons_bounds_right: 0.085 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 88 percent done.
SH2D2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.363186e-02	ci left: 2.662650e-01	ci right 2.838662e-01	k: 2750	n:10000
Cons ci ratio: 5.264337e-02	ci left: 3.472048e-01	ci right 3.660788e-01	k: 3566	n:10000
KS ci ratio: 2.025482e-01	ci left: 3.243447e-02	ci right 3.983893e-02	k: 360	n:10000
SH2D2A   10000 perm   1 sec   (7652 perm/sec)   p_kst 3.600000e-02   p_cons 3.566000e-01   p_joint 2.750000e-01

Joint ci ratio: 5.969760e-02	ci left: 1.720291e-01	ci right 1.826649e-01	k: 3546	n:20000
Cons ci ratio: 3.713937e-02	ci left: 3.510531e-01	ci right 3.643883e-01	k: 7154	n:20000
KS ci ratio: 1.449005e-01	ci left: 3.273699e-02	ci right 3.789925e-02	k: 705	n:20000
SH2D2A   20000 perm   3 sec   (6684 perm/sec)   p_kst 3.525000e-02   p_cons 3.577000e-01   p_joint 1.773000e-01

Joint ci ratio: 4.330934e-02	ci left: 2.098332e-01	ci right 2.191555e-01	k: 6434	n:30000
Cons ci ratio: 3.032744e-02	ci left: 3.522402e-01	ci right 3.631208e-01	k: 10730	n:30000
KS ci ratio: 1.171132e-01	ci left: 3.388795e-02	ci right 3.813586e-02	k: 1079	n:30000
SH2D2A   30000 perm   5 sec   (6292 perm/sec)   p_kst 3.596667e-02   p_cons 3.576667e-01   p_joint 2.144667e-01

Joint ci ratio: 3.897759e-02	ci left: 1.978762e-01	ci right 2.057672e-01	k: 8072	n:40000
Cons ci ratio: 2.630008e-02	ci left: 3.523526e-01	ci right 3.617681e-01	k: 14282	n:40000
KS ci ratio: 1.014966e-01	ci left: 3.412248e-02	ci right 3.779529e-02	k: 1437	n:40000
SH2D2A   40000 perm   7 sec   (6073 perm/sec)   p_kst 3.592500e-02   p_cons 3.570500e-01   p_joint 2.018000e-01

Joint ci ratio: 3.850141e-02	ci left: 1.684036e-01	ci right 1.750346e-01	k: 8585	n:50000
Cons ci ratio: 2.348334e-02	ci left: 3.536366e-01	ci right 3.620599e-01	k: 17892	n:50000
KS ci ratio: 9.079460e-02	ci left: 3.430586e-02	ci right 3.758830e-02	k: 1796	n:50000
SH2D2A   50000 perm   8 sec   (5912 perm/sec)   p_kst 3.592000e-02   p_cons 3.578400e-01   p_joint 1.717000e-01

Outputting figure to mutsig2_images.part000000000156/SH2D2A.2_1232_50000_0.03592_0.35784_0.1717.png
                gene_name: SH2D2A
               theta_stop: 0.091 
                    nperm: 50000 
                     p_ks: 0.036 
        ci_ks_bounds_left: 0.034 
       ci_ks_bounds_right: 0.038 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 90 percent done.
SH2D3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.931867e-02	ci left: 7.966903e-01	ci right 8.123319e-01	k: 8046	n:10000
Cons ci ratio: 3.534585e-02	ci left: 5.416885e-01	ci right 5.612815e-01	k: 5515	n:10000
KS ci ratio: 2.311446e-02	ci left: 7.333048e-01	ci right 7.505541e-01	k: 7420	n:10000
SH2D3A   10000 perm   1 sec   (6958 perm/sec)   p_kst 7.420000e-01   p_cons 5.515000e-01   p_joint 8.046000e-01

Outputting figure to mutsig2_images.part000000000156/SH2D3A.2_1767_10000_0.742_0.5515_0.8046.png
                gene_name: SH2D3A
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 93 percent done.
SH2D4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.798081e-02	ci left: 3.905776e-01	ci right 4.098806e-01	k: 4002	n:10000
Cons ci ratio: 2.299376e-02	ci left: 7.353260e-01	ci right 7.525317e-01	k: 7440	n:10000
KS ci ratio: 8.792570e-02	ci left: 1.584608e-01	ci right 1.731345e-01	k: 1657	n:10000
SH2D4B   10000 perm   1 sec   (7301 perm/sec)   p_kst 1.657000e-01   p_cons 7.440000e-01   p_joint 4.002000e-01

Outputting figure to mutsig2_images.part000000000156/SH2D4B.2_1146_10000_0.1657_0.744_0.4002.png
                gene_name: SH2D4B
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 95 percent done.
SH2D7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.213094e-02	ci left: 7.497846e-01	ci right 7.666647e-01	k: 7583	n:10000
KS ci ratio: 9.786555e-03	ci left: 9.366165e-01	ci right 9.459244e-01	k: 9414	n:10000
SH2D7   10000 perm   1 sec   (7151 perm/sec)   p_kst 9.414000e-01   p_cons 7.583000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000156/SH2D7.2_1380_10000_0.9414_0.7583_1.png
                gene_name: SH2D7
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
SH3GL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.520736e-02	ci left: 4.193710e-01	ci right 4.388703e-01	k: 4291	n:10000
KS ci ratio: 6.415632e-03	ci left: 9.706895e-01	ci right 9.770303e-01	k: 9740	n:10000
SH3GL1   10000 perm   1 sec   (7449 perm/sec)   p_kst 9.740000e-01   p_cons 4.291000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000156/SH3GL1.2_1147_10000_0.974_0.4291_1.png
                gene_name: SH3GL1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000156
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 156 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1730>
Subject: Job 8004540: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1730>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000157> was used as the working directory.
Started at Sun Nov 11 15:17:13 2012
Results reported at Sun Nov 11 15:28:55 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000157.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000157.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 157  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000157.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    717.62 sec.
    Max Memory :      4728 MB
    Max Swap   :      7123 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
157
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 157
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 157: processing genes 14114 - 14204
Calculating significance of each gene.
Using projection method.
14114	SH3PXD2B	1
14115	SH3RF1	9.532929e-01
14116	SH3RF2	1.073718e-01
14117	SH3RF3	6.632589e-01
14118	SH3TC1	7.342238e-01
14119	SH3TC2	9.664030e-01
14120	SH3YL1	1.645002e-01
14121	SHANK1	4.058877e-01
14122	SHANK2	1
14123	SHANK3	3.668069e-01
14124	SHARPIN	7.290286e-01
14125	SHB	1
14126	SHBG	6.610931e-01
14127	SHC1	6.278162e-01
14128	SHC2	4.158662e-02
14129	SHC3	5.172806e-01
14130	SHC4	1.113874e-01
14131	SHCBP1	3.890623e-01
14132	SHD	6.033283e-01
14133	SHE	1
14134	SHF	5.505998e-01
14135	SHFM1	1
14136	SHH	5.041412e-01
14137	SHISA2	1.564049e-01
14138	SHISA3	4.413039e-02
14139	SHISA4	4.799504e-01
14140	SHISA5	1
14141	SHKBP1	6.029652e-01
14142	SHMT1	1
14143	SHMT2	1
14144	SHOC2	1
14145	SHOX	3.874138e-03
14146	SHOX2	6.939901e-01
14147	SHPK	3.381305e-01
14148	SHPRH	4.479187e-01
14149	SHQ1	5.373344e-01
14150	SHROOM1	8.749720e-01
14151	SHROOM2	5.204014e-01
14152	SHROOM3	8.744025e-01
14153	SHROOM4	5.980982e-01
14154	SI	3.575584e-12
14155	SIAE	6.972740e-01
14156	SIAH1	7.451947e-01
14157	SIAH2	5.386409e-01
14158	SIAH3	1.035061e-01
14159	SIDT1	7.657884e-01
14160	SIDT2	1
14161	SIGIRR	3.930266e-01
14162	SIGLEC1	5.504970e-01
14163	SIGLEC10	1.264880e-02
14164	SIGLEC11	8.486272e-01
14165	SIGLEC12	1
14166	SIGLEC14	1
14167	SIGLEC15	3.946003e-01
14168	SIGLEC5	4.242520e-01
14169	SIGLEC6	7.047525e-01
14170	SIGLEC7	1
14171	SIGLEC8	8.173236e-02
14172	SIGLEC9	1.031796e-01
14173	SIGMAR1	1
14174	SIK1	7.493548e-01
14175	SIK2	9.508085e-01
14176	SIK3	4.966340e-01
14177	SIKE1	1
14178	SIL1	7.454521e-01
14179	SILV	8.690763e-01
14180	SIM1	7.479428e-01
14181	SIM2	5.059010e-01
14182	SIN3A	6.068854e-01
14183	SIN3B	8.408626e-01
14184	SIP1	1
14185	SIPA1	1
14186	SIPA1L1	9.983546e-01
14187	SIPA1L2	9.912643e-01
14188	SIPA1L3	9.783488e-01
14189	SIRPA	5.207625e-02
14190	SIRPB1	4.403009e-01
14191	SIRPB2	4.407905e-01
14192	SIRPD	4.039148e-01
14193	SIRPG	4.995531e-02
14194	SIRT1	9.126418e-01
14195	SIRT2	3.199023e-01
14196	SIRT3	5.283481e-01
14197	SIRT4	4.913607e-01
14198	SIRT5	1
14199	SIRT6	5.322419e-02
14200	SIRT7	3.548879e-01
14201	SIT1	1
14202	SIVA1	2.455163e-01
14203	SIX1	5.310306e-01
14204	SIX2	2.516135e-01
Done

Running MutSig 2:
Scatter job 157: processing genes 14114 - 14204
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SI
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.023059e-02	ci left: 9.313350e-01	ci right 9.410090e-01	k: 9363	n:10000
Cons ci ratio: 2.001014e-02	ci left: 7.852285e-01	ci right 8.012004e-01	k: 7933	n:10000
KS ci ratio: 2.217922e-02	ci left: 7.489754e-01	ci right 7.658744e-01	k: 7575	n:10000
SI   10000 perm   3 sec   (3680 perm/sec)   p_kst 7.575000e-01   p_cons 7.933000e-01   p_joint 9.363000e-01

Outputting figure to mutsig2_images.part000000000157/SI.46_5672_10000_0.7575_0.7933_0.9363.png
                gene_name: SI
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 2 percent done.
SIPA1L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.520517e-02	ci left: 3.258476e-01	ci right 3.444485e-01	k: 3351	n:10000
Cons ci ratio: 1.353006e-02	ci left: 8.873914e-01	ci right 8.995783e-01	k: 8936	n:10000
KS ci ratio: 7.564171e-02	ci left: 2.036295e-01	ci right 2.197388e-01	k: 2116	n:10000
SIPA1L2   10000 perm   2 sec   (4727 perm/sec)   p_kst 2.116000e-01   p_cons 8.936000e-01   p_joint 3.351000e-01

Outputting figure to mutsig2_images.part000000000157/SIPA1L2.11_5253_10000_0.2116_0.8936_0.3351.png
                gene_name: SIPA1L2
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 3 percent done.
SIM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.086341e-01	ci left: 1.089077e-01	ci right 1.215175e-01	k: 1151	n:10000
Cons ci ratio: 1.186767e-02	ci left: 9.104942e-01	ci right 9.214620e-01	k: 9161	n:10000
KS ci ratio: 1.651998e-01	ci left: 4.888186e-02	ci right 5.778061e-02	k: 532	n:10000
SIM1   10000 perm   2 sec   (5573 perm/sec)   p_kst 5.320000e-02   p_cons 9.161000e-01   p_joint 1.151000e-01

Joint ci ratio: 8.107548e-02	ci left: 1.003913e-01	ci right 1.089240e-01	k: 2092	n:20000
Cons ci ratio: 8.395523e-03	ci left: 9.120699e-01	ci right 9.198087e-01	k: 18320	n:20000
KS ci ratio: 1.191975e-01	ci left: 4.823440e-02	ci right 5.439688e-02	k: 1025	n:20000
SIM1   20000 perm   4 sec   (5026 perm/sec)   p_kst 5.125000e-02   p_cons 9.160000e-01   p_joint 1.046000e-01

Joint ci ratio: 6.379028e-02	ci left: 1.082223e-01	ci right 1.153864e-01	k: 3353	n:30000
Cons ci ratio: 6.854470e-03	ci left: 9.128040e-01	ci right 9.191152e-01	k: 27480	n:30000
KS ci ratio: 9.572925e-02	ci left: 5.039385e-02	ci right 5.549316e-02	k: 1587	n:30000
SIM1   30000 perm   6 sec   (4832 perm/sec)   p_kst 5.290000e-02   p_cons 9.160000e-01   p_joint 1.117667e-01

Outputting figure to mutsig2_images.part000000000157/SIM1.10_2345_30000_0.0529_0.916_0.11177.png
                gene_name: SIM1
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.053 
        ci_ks_bounds_left: 0.050 
       ci_ks_bounds_right: 0.055 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 5 percent done.
SHANK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.483020e-01	ci left: 6.043844e-02	ci right 7.021664e-02	k: 652	n:10000
Cons ci ratio: 2.371212e-01	ci left: 2.344048e-02	ci right 2.983930e-02	k: 265	n:10000
KS ci ratio: 1.102633e-01	ci left: 1.059801e-01	ci right 1.184468e-01	k: 1121	n:10000
SHANK2   10000 perm   2 sec   (5205 perm/sec)   p_kst 1.121000e-01   p_cons 2.650000e-02   p_joint 6.520000e-02

Joint ci ratio: 2.085981e-01	ci left: 1.553840e-02	ci right 1.920385e-02	k: 346	n:20000
Cons ci ratio: 1.584294e-01	ci left: 2.734281e-02	ci right 3.209522e-02	k: 593	n:20000
KS ci ratio: 7.840294e-02	ci left: 1.067273e-01	ci right 1.154861e-01	k: 2221	n:20000
SHANK2   20000 perm   4 sec   (4708 perm/sec)   p_kst 1.110500e-01   p_cons 2.965000e-02   p_joint 1.730000e-02

Joint ci ratio: 1.270970e-01	ci left: 2.877686e-02	ci right 3.271471e-02	k: 921	n:30000
Cons ci ratio: 1.323742e-01	ci left: 2.651715e-02	ci right 3.030825e-02	k: 851	n:30000
KS ci ratio: 6.264981e-02	ci left: 1.118052e-01	ci right 1.190694e-01	k: 3462	n:30000
SHANK2   30000 perm   7 sec   (4509 perm/sec)   p_kst 1.154000e-01   p_cons 2.836667e-02   p_joint 3.070000e-02

Joint ci ratio: 1.234813e-01	ci left: 2.305558e-02	ci right 2.611397e-02	k: 982	n:40000
Cons ci ratio: 1.165002e-01	ci left: 2.591926e-02	ci right 2.914982e-02	k: 1100	n:40000
KS ci ratio: 5.396841e-02	ci left: 1.133714e-01	ci right 1.196844e-01	k: 4660	n:40000
SHANK2   40000 perm   9 sec   (4382 perm/sec)   p_kst 1.165000e-01   p_cons 2.750000e-02   p_joint 2.455000e-02

Joint ci ratio: 1.299258e-01	ci left: 1.671717e-02	ci right 1.905929e-02	k: 893	n:50000
Cons ci ratio: 1.035932e-01	ci left: 2.639596e-02	ci right 2.929920e-02	k: 1391	n:50000
KS ci ratio: 4.833313e-02	ci left: 1.134430e-01	ci right 1.190817e-01	k: 5812	n:50000
SHANK2   50000 perm   12 sec   (4284 perm/sec)   p_kst 1.162400e-01   p_cons 2.782000e-02   p_joint 1.786000e-02

Joint ci ratio: 1.058828e-01	ci left: 2.114957e-02	ci right 2.353028e-02	k: 1339	n:60000
Cons ci ratio: 9.540489e-02	ci left: 2.605951e-02	ci right 2.868647e-02	k: 1641	n:60000
KS ci ratio: 4.413127e-02	ci left: 1.136461e-01	ci right 1.187911e-01	k: 6972	n:60000
SHANK2   60000 perm   14 sec   (4201 perm/sec)   p_kst 1.162000e-01   p_cons 2.735000e-02   p_joint 2.231667e-02

Joint ci ratio: 9.217601e-02	ci left: 2.402357e-02	ci right 2.635887e-02	k: 1762	n:70000
Cons ci ratio: 8.862958e-02	ci left: 2.597951e-02	ci right 2.840276e-02	k: 1902	n:70000
KS ci ratio: 4.081840e-02	ci left: 1.140330e-01	ci right 1.187988e-01	k: 8148	n:70000
SHANK2   70000 perm   17 sec   (4126 perm/sec)   p_kst 1.164000e-01   p_cons 2.717143e-02   p_joint 2.517143e-02

Outputting figure to mutsig2_images.part000000000157/SHANK2.9_5536_70000_0.1164_0.027171_0.025171.png
                gene_name: SHANK2
               theta_stop: 0.092 
                    nperm: 70000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.027 
      ci_cons_bounds_left: 0.026 
     ci_cons_bounds_right: 0.028 
                  p_joint: 0.025 
     ci_joint_bounds_left: 0.024 
    ci_joint_bounds_right: 0.026 

Current progress: 7 percent done.
SIGLEC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.428867e-01	ci left: 1.068957e-02	ci right 1.520079e-02	k: 128	n:10000
Cons ci ratio: 8.811689e-02	ci left: 1.578715e-01	ci right 1.725241e-01	k: 1651	n:10000
KS ci ratio: 6.710973e-01	ci left: 2.272624e-03	ci right 4.631334e-03	k: 33	n:10000
SIGLEC1   10000 perm   2 sec   (5249 perm/sec)   p_kst 3.300000e-03   p_cons 1.651000e-01   p_joint 1.280000e-02

Joint ci ratio: 3.325311e-01	ci left: 5.754049e-03	ci right 8.092762e-03	k: 137	n:20000
Cons ci ratio: 6.274169e-02	ci left: 1.581520e-01	ci right 1.684461e-01	k: 3265	n:20000
KS ci ratio: 4.373811e-01	ci left: 3.128462e-03	ci right 4.920482e-03	k: 79	n:20000
SIGLEC1   20000 perm   4 sec   (4727 perm/sec)   p_kst 3.950000e-03   p_cons 1.632500e-01   p_joint 6.850000e-03

Joint ci ratio: 2.104432e-01	ci left: 1.022953e-02	ci right 1.266646e-02	k: 342	n:30000
Cons ci ratio: 5.356692e-02	ci left: 1.473942e-01	ci right 1.555401e-01	k: 4543	n:30000
KS ci ratio: 3.601489e-01	ci left: 3.226442e-03	ci right 4.672237e-03	k: 117	n:30000
SIGLEC1   30000 perm   7 sec   (4543 perm/sec)   p_kst 3.900000e-03   p_cons 1.514333e-01   p_joint 1.140000e-02

Joint ci ratio: 1.647833e-01	ci left: 1.279955e-02	ci right 1.512180e-02	k: 557	n:40000
Cons ci ratio: 4.651567e-02	ci left: 1.472565e-01	ci right 1.542943e-01	k: 6030	n:40000
KS ci ratio: 3.343300e-01	ci left: 2.853357e-03	ci right 4.020568e-03	k: 136	n:40000
SIGLEC1   40000 perm   9 sec   (4407 perm/sec)   p_kst 3.400000e-03   p_cons 1.507500e-01   p_joint 1.392500e-02

Joint ci ratio: 1.594727e-01	ci left: 1.098716e-02	ci right 1.291013e-02	k: 596	n:50000
Cons ci ratio: 4.149401e-02	ci left: 1.483082e-01	ci right 1.546124e-01	k: 7572	n:50000
KS ci ratio: 2.975131e-01	ci left: 2.945803e-03	ci right 3.993152e-03	k: 172	n:50000
SIGLEC1   50000 perm   12 sec   (4297 perm/sec)   p_kst 3.440000e-03   p_cons 1.514400e-01   p_joint 1.192000e-02

Joint ci ratio: 1.486974e-01	ci left: 1.059802e-02	ci right 1.231639e-02	k: 686	n:60000
Cons ci ratio: 3.800596e-02	ci left: 1.477303e-01	ci right 1.534702e-01	k: 9035	n:60000
KS ci ratio: 2.674852e-01	ci left: 3.089918e-03	ci right 4.059079e-03	k: 213	n:60000
SIGLEC1   60000 perm   14 sec   (4203 perm/sec)   p_kst 3.550000e-03   p_cons 1.505833e-01   p_joint 1.143333e-02

Joint ci ratio: 1.519800e-01	ci left: 8.698405e-03	ci right 1.014270e-02	k: 658	n:70000
Cons ci ratio: 3.523000e-02	ci left: 1.476317e-01	ci right 1.529402e-01	k: 10519	n:70000
KS ci ratio: 2.372210e-01	ci left: 3.424917e-03	ci right 4.359804e-03	k: 271	n:70000
SIGLEC1   70000 perm   17 sec   (4138 perm/sec)   p_kst 3.871429e-03   p_cons 1.502714e-01   p_joint 9.400000e-03

Joint ci ratio: 1.967479e-01	ci left: 4.451673e-03	ci right 5.434757e-03	k: 394	n:80000
Cons ci ratio: 3.293510e-02	ci left: 1.479542e-01	ci right 1.529211e-01	k: 12034	n:80000
KS ci ratio: 2.309734e-01	ci left: 3.173258e-03	ci right 4.013376e-03	k: 286	n:80000
SIGLEC1   80000 perm   20 sec   (4075 perm/sec)   p_kst 3.575000e-03   p_cons 1.504250e-01   p_joint 4.925000e-03

Joint ci ratio: 1.924464e-01	ci left: 4.147234e-03	ci right 5.040714e-03	k: 412	n:90000
Cons ci ratio: 3.108717e-02	ci left: 1.478054e-01	ci right 1.524838e-01	k: 13512	n:90000
KS ci ratio: 2.173842e-01	ci left: 3.208723e-03	ci right 4.001580e-03	k: 323	n:90000
SIGLEC1   90000 perm   22 sec   (4019 perm/sec)   p_kst 3.588889e-03   p_cons 1.501333e-01   p_joint 4.577778e-03

Joint ci ratio: 1.852021e-01	ci left: 4.046895e-03	ci right 4.882249e-03	k: 445	n:100000
Cons ci ratio: 2.948547e-02	ci left: 1.479809e-01	ci right 1.524194e-01	k: 15019	n:100000
KS ci ratio: 2.048064e-01	ci left: 3.276203e-03	ci right 4.033035e-03	k: 364	n:100000
SIGLEC1   100000 perm   25 sec   (3961 perm/sec)   p_kst 3.640000e-03   p_cons 1.501900e-01   p_joint 4.450000e-03

Joint ci ratio: 2.007432e-01	ci left: 3.107779e-03	ci right 3.809712e-03	k: 379	n:110000
Cons ci ratio: 2.812733e-02	ci left: 1.479578e-01	ci right 1.521879e-01	k: 16507	n:110000
KS ci ratio: 1.973834e-01	ci left: 3.220088e-03	ci right 3.933752e-03	k: 392	n:110000
SIGLEC1   110000 perm   28 sec   (3907 perm/sec)   p_kst 3.563636e-03   p_cons 1.500636e-01   p_joint 3.445455e-03

Joint ci ratio: 2.018408e-01	ci left: 2.817100e-03	ci right 3.457284e-03	k: 375	n:120000
Cons ci ratio: 2.695341e-02	ci left: 1.478266e-01	ci right 1.518737e-01	k: 17981	n:120000
KS ci ratio: 1.871765e-01	ci left: 3.300786e-03	ci right 3.990210e-03	k: 436	n:120000
SIGLEC1   120000 perm   31 sec   (3853 perm/sec)   p_kst 3.633333e-03   p_cons 1.498417e-01   p_joint 3.125000e-03

Joint ci ratio: 1.992256e-01	ci left: 2.673441e-03	ci right 3.272148e-03	k: 385	n:130000
Cons ci ratio: 2.596856e-02	ci left: 1.471984e-01	ci right 1.510788e-01	k: 19387	n:130000
KS ci ratio: 1.804883e-01	ci left: 3.289045e-03	ci right 3.948787e-03	k: 469	n:130000
SIGLEC1   130000 perm   34 sec   (3803 perm/sec)   p_kst 3.607692e-03   p_cons 1.491308e-01   p_joint 2.961538e-03

Joint ci ratio: 1.942633e-01	ci left: 2.618294e-03	ci right 3.188318e-03	k: 405	n:140000
Cons ci ratio: 2.509559e-02	ci left: 1.465487e-01	ci right 1.502802e-01	k: 20777	n:140000
KS ci ratio: 1.727542e-01	ci left: 3.347691e-03	ci right 3.987423e-03	k: 512	n:140000
SIGLEC1   140000 perm   37 sec   (3756 perm/sec)   p_kst 3.657143e-03   p_cons 1.484071e-01   p_joint 2.892857e-03

Joint ci ratio: 1.887674e-01	ci left: 2.596067e-03	ci right 3.143429e-03	k: 429	n:150000
Cons ci ratio: 2.423196e-02	ci left: 1.467437e-01	ci right 1.503499e-01	k: 22281	n:150000
KS ci ratio: 1.654886e-01	ci left: 3.418212e-03	ci right 4.041213e-03	k: 558	n:150000
SIGLEC1   150000 perm   41 sec   (3701 perm/sec)   p_kst 3.720000e-03   p_cons 1.485400e-01   p_joint 2.860000e-03

Joint ci ratio: 1.522703e-01	ci left: 3.810823e-03	ci right 4.444853e-03	k: 659	n:160000
Cons ci ratio: 2.347495e-02	ci left: 1.466676e-01	ci right 1.501577e-01	k: 23745	n:160000
KS ci ratio: 1.604047e-01	ci left: 3.420400e-03	ci right 4.022803e-03	k: 594	n:160000
SIGLEC1   160000 perm   44 sec   (3649 perm/sec)   p_kst 3.712500e-03   p_cons 1.484062e-01   p_joint 4.118750e-03

Joint ci ratio: 1.505806e-01	ci left: 3.671529e-03	ci right 4.274992e-03	k: 674	n:170000
Cons ci ratio: 2.281022e-02	ci left: 1.463209e-01	ci right 1.497029e-01	k: 25161	n:170000
KS ci ratio: 1.556387e-01	ci left: 3.428243e-03	ci right 4.012412e-03	k: 631	n:170000
SIGLEC1   170000 perm   47 sec   (3596 perm/sec)   p_kst 3.711765e-03   p_cons 1.480059e-01   p_joint 3.964706e-03

Joint ci ratio: 1.484063e-01	ci left: 3.574497e-03	ci right 4.152774e-03	k: 694	n:180000
Cons ci ratio: 2.219352e-02	ci left: 1.460749e-01	ci right 1.493587e-01	k: 26588	n:180000
KS ci ratio: 1.515011e-01	ci left: 3.424757e-03	ci right 3.991412e-03	k: 666	n:180000
SIGLEC1   180000 perm   51 sec   (3547 perm/sec)   p_kst 3.700000e-03   p_cons 1.477111e-01   p_joint 3.855556e-03

Joint ci ratio: 1.444097e-01	ci left: 3.584111e-03	ci right 4.146982e-03	k: 733	n:190000
Cons ci ratio: 2.157912e-02	ci left: 1.463799e-01	ci right 1.495783e-01	k: 28115	n:190000
KS ci ratio: 1.473612e-01	ci left: 3.437031e-03	ci right 3.988808e-03	k: 704	n:190000
SIGLEC1   190000 perm   54 sec   (3500 perm/sec)   p_kst 3.705263e-03   p_cons 1.479737e-01   p_joint 3.857895e-03

Joint ci ratio: 1.510755e-01	ci left: 3.101485e-03	ci right 3.613077e-03	k: 670	n:200000
Cons ci ratio: 2.103389e-02	ci left: 1.464065e-01	ci right 1.495237e-01	k: 29592	n:200000
KS ci ratio: 1.431568e-01	ci left: 3.467552e-03	ci right 4.006989e-03	k: 746	n:200000
SIGLEC1   200000 perm   58 sec   (3455 perm/sec)   p_kst 3.730000e-03   p_cons 1.479600e-01   p_joint 3.350000e-03

Joint ci ratio: 1.242915e-01	ci left: 4.421176e-03	ci right 5.011671e-03	k: 989	n:210000
Cons ci ratio: 2.051328e-02	ci left: 1.466117e-01	ci right 1.496551e-01	k: 31107	n:210000
KS ci ratio: 1.405502e-01	ci left: 3.431027e-03	ci right 3.954248e-03	k: 774	n:210000
SIGLEC1   210000 perm   62 sec   (3412 perm/sec)   p_kst 3.685714e-03   p_cons 1.481286e-01   p_joint 4.709524e-03

Joint ci ratio: 1.266389e-01	ci left: 4.061665e-03	ci right 4.615156e-03	k: 953	n:220000
Cons ci ratio: 2.005152e-02	ci left: 1.465231e-01	ci right 1.494953e-01	k: 32561	n:220000
KS ci ratio: 1.377369e-01	ci left: 3.415460e-03	ci right 3.925027e-03	k: 806	n:220000
SIGLEC1   220000 perm   65 sec   (3368 perm/sec)   p_kst 3.663636e-03   p_cons 1.480045e-01   p_joint 4.331818e-03

Joint ci ratio: 1.270528e-01	ci left: 3.859786e-03	ci right 4.387614e-03	k: 947	n:230000
Cons ci ratio: 1.961385e-02	ci left: 1.465164e-01	ci right 1.494229e-01	k: 34032	n:230000
KS ci ratio: 1.345240e-01	ci left: 3.430754e-03	ci right 3.929708e-03	k: 845	n:230000
SIGLEC1   230000 perm   69 sec   (3328 perm/sec)   p_kst 3.673913e-03   p_cons 1.479652e-01   p_joint 4.117391e-03

Joint ci ratio: 1.348547e-01	ci left: 3.271683e-03	ci right 3.748765e-03	k: 841	n:240000
Cons ci ratio: 1.919825e-02	ci left: 1.465815e-01	ci right 1.494270e-01	k: 35520	n:240000
KS ci ratio: 1.321267e-01	ci left: 3.412662e-03	ci right 3.899446e-03	k: 876	n:240000
SIGLEC1   240000 perm   73 sec   (3286 perm/sec)   p_kst 3.650000e-03   p_cons 1.480000e-01   p_joint 3.504167e-03

Joint ci ratio: 1.319101e-01	ci left: 3.287746e-03	ci right 3.755881e-03	k: 879	n:250000
Cons ci ratio: 1.881306e-02	ci left: 1.465743e-01	ci right 1.493619e-01	k: 36991	n:250000
KS ci ratio: 1.292119e-01	ci left: 3.430928e-03	ci right 3.908693e-03	k: 916	n:250000
SIGLEC1   250000 perm   77 sec   (3242 perm/sec)   p_kst 3.664000e-03   p_cons 1.479640e-01   p_joint 3.516000e-03

Joint ci ratio: 1.131360e-01	ci left: 4.336037e-03	ci right 4.859716e-03	k: 1194	n:260000
Cons ci ratio: 1.845327e-02	ci left: 1.465260e-01	ci right 1.492588e-01	k: 38451	n:260000
KS ci ratio: 1.268149e-01	ci left: 3.429273e-03	ci right 3.897283e-03	k: 951	n:260000
SIGLEC1   260000 perm   81 sec   (3203 perm/sec)   p_kst 3.657692e-03   p_cons 1.478885e-01   p_joint 4.592308e-03

Joint ci ratio: 1.144026e-01	ci left: 4.081856e-03	ci right 4.580727e-03	k: 1168	n:270000
Cons ci ratio: 1.812055e-02	ci left: 1.463821e-01	ci right 1.490625e-01	k: 39884	n:270000
KS ci ratio: 1.245465e-01	ci left: 3.427817e-03	ci right 3.886642e-03	k: 986	n:270000
SIGLEC1   270000 perm   85 sec   (3165 perm/sec)   p_kst 3.651852e-03   p_cons 1.477185e-01   p_joint 4.325926e-03

Joint ci ratio: 1.157108e-01	ci left: 3.845864e-03	ci right 4.321634e-03	k: 1142	n:280000
Cons ci ratio: 1.779938e-02	ci left: 1.463308e-01	ci right 1.489623e-01	k: 41340	n:280000
KS ci ratio: 1.221559e-01	ci left: 3.440385e-03	ci right 3.891413e-03	k: 1025	n:280000
SIGLEC1   280000 perm   89 sec   (3129 perm/sec)   p_kst 3.660714e-03   p_cons 1.476429e-01   p_joint 4.078571e-03

Joint ci ratio: 1.149641e-01	ci left: 3.763471e-03	ci right 4.225839e-03	k: 1157	n:290000
Cons ci ratio: 1.748656e-02	ci left: 1.464002e-01	ci right 1.489862e-01	k: 42830	n:290000
KS ci ratio: 1.195044e-01	ci left: 3.475581e-03	ci right 3.920635e-03	k: 1071	n:290000
SIGLEC1   290000 perm   94 sec   (3096 perm/sec)   p_kst 3.693103e-03   p_cons 1.476897e-01   p_joint 3.989655e-03

Joint ci ratio: 1.129812e-01	ci left: 3.770793e-03	ci right 4.225538e-03	k: 1198	n:300000
Cons ci ratio: 1.720061e-02	ci left: 1.463059e-01	ci right 1.488476e-01	k: 44272	n:300000
KS ci ratio: 1.177072e-01	ci left: 3.466464e-03	ci right 3.903210e-03	k: 1104	n:300000
SIGLEC1   300000 perm   98 sec   (3062 perm/sec)   p_kst 3.680000e-03   p_cons 1.475733e-01   p_joint 3.993333e-03

Joint ci ratio: 1.148794e-01	ci left: 3.526907e-03	ci right 3.959871e-03	k: 1159	n:310000
Cons ci ratio: 1.691630e-02	ci left: 1.463948e-01	ci right 1.488956e-01	k: 45769	n:310000
KS ci ratio: 1.155311e-01	ci left: 3.486176e-03	ci right 3.916732e-03	k: 1146	n:310000
SIGLEC1   310000 perm   102 sec   (3029 perm/sec)   p_kst 3.696774e-03   p_cons 1.476419e-01   p_joint 3.738710e-03

Joint ci ratio: 1.044245e-01	ci left: 4.155352e-03	ci right 4.616194e-03	k: 1402	n:320000
Cons ci ratio: 1.665019e-02	ci left: 1.464100e-01	ci right 1.488713e-01	k: 47244	n:320000
KS ci ratio: 1.137116e-01	ci left: 3.489543e-03	ci right 3.913273e-03	k: 1183	n:320000
SIGLEC1   320000 perm   107 sec   (3002 perm/sec)   p_kst 3.696875e-03   p_cons 1.476375e-01   p_joint 4.381250e-03

Joint ci ratio: 1.058423e-01	ci left: 3.920234e-03	ci right 4.361270e-03	k: 1365	n:330000
Cons ci ratio: 1.638974e-02	ci left: 1.465243e-01	ci right 1.489486e-01	k: 48752	n:330000
KS ci ratio: 1.120215e-01	ci left: 3.489811e-03	ci right 3.906858e-03	k: 1219	n:330000
SIGLEC1   330000 perm   111 sec   (2972 perm/sec)   p_kst 3.693939e-03   p_cons 1.477333e-01   p_joint 4.136364e-03

Joint ci ratio: 1.043634e-01	ci left: 3.916624e-03	ci right 4.350718e-03	k: 1404	n:340000
Cons ci ratio: 1.615679e-02	ci left: 1.463887e-01	ci right 1.487761e-01	k: 50177	n:340000
KS ci ratio: 1.103605e-01	ci left: 3.492967e-03	ci right 3.903799e-03	k: 1256	n:340000
SIGLEC1   340000 perm   116 sec   (2941 perm/sec)   p_kst 3.694118e-03   p_cons 1.475794e-01   p_joint 4.129412e-03

Joint ci ratio: 1.041465e-01	ci left: 3.821406e-03	ci right 4.244013e-03	k: 1410	n:350000
Cons ci ratio: 1.592139e-02	ci left: 1.464520e-01	ci right 1.488053e-01	k: 51669	n:350000
KS ci ratio: 1.087291e-01	ci left: 3.498765e-03	ci right 3.903806e-03	k: 1294	n:350000
SIGLEC1   350000 perm   120 sec   (2911 perm/sec)   p_kst 3.697143e-03   p_cons 1.476257e-01   p_joint 4.028571e-03

Joint ci ratio: 1.058218e-01	ci left: 3.596221e-03	ci right 4.000720e-03	k: 1366	n:360000
Cons ci ratio: 1.569199e-02	ci left: 1.465757e-01	ci right 1.488967e-01	k: 53184	n:360000
KS ci ratio: 1.078194e-01	ci left: 3.461029e-03	ci right 3.858137e-03	k: 1316	n:360000
SIGLEC1   360000 perm   125 sec   (2881 perm/sec)   p_kst 3.655556e-03   p_cons 1.477333e-01   p_joint 3.794444e-03

Joint ci ratio: 1.052110e-01	ci left: 3.541122e-03	ci right 3.936983e-03	k: 1382	n:370000
Cons ci ratio: 1.548802e-02	ci left: 1.464369e-01	ci right 1.487253e-01	k: 54604	n:370000
KS ci ratio: 1.063359e-01	ci left: 3.464810e-03	ci right 3.856540e-03	k: 1353	n:370000
SIGLEC1   370000 perm   130 sec   (2850 perm/sec)   p_kst 3.656757e-03   p_cons 1.475784e-01   p_joint 3.735135e-03

Joint ci ratio: 1.054076e-01	ci left: 3.435114e-03	ci right 3.819885e-03	k: 1377	n:380000
Cons ci ratio: 1.528828e-02	ci left: 1.463634e-01	ci right 1.486209e-01	k: 56046	n:380000
KS ci ratio: 1.052544e-01	ci left: 3.445364e-03	ci right 3.830687e-03	k: 1381	n:380000
SIGLEC1   380000 perm   135 sec   (2823 perm/sec)   p_kst 3.634211e-03   p_cons 1.474895e-01   p_joint 3.623684e-03

Joint ci ratio: 1.056823e-01	ci left: 3.329549e-03	ci right 3.703528e-03	k: 1370	n:390000
Cons ci ratio: 1.509300e-02	ci left: 1.463450e-01	ci right 1.485731e-01	k: 57508	n:390000
KS ci ratio: 1.038730e-01	ci left: 3.449412e-03	ci right 3.829816e-03	k: 1418	n:390000
SIGLEC1   390000 perm   139 sec   (2796 perm/sec)   p_kst 3.635897e-03   p_cons 1.474564e-01   p_joint 3.512821e-03

Joint ci ratio: 1.056869e-01	ci left: 3.246303e-03	ci right 3.610949e-03	k: 1370	n:400000
Cons ci ratio: 1.490352e-02	ci left: 1.463526e-01	ci right 1.485526e-01	k: 58980	n:400000
KS ci ratio: 1.023332e-01	ci left: 3.467906e-03	ci right 3.844340e-03	k: 1461	n:400000
SIGLEC1   400000 perm   145 sec   (2767 perm/sec)   p_kst 3.652500e-03   p_cons 1.474500e-01   p_joint 3.425000e-03

Joint ci ratio: 1.056914e-01	ci left: 3.167118e-03	ci right 3.522885e-03	k: 1370	n:410000
Cons ci ratio: 1.471430e-02	ci left: 1.464742e-01	ci right 1.486478e-01	k: 60499	n:410000
KS ci ratio: 1.012319e-01	ci left: 3.459384e-03	ci right 3.830612e-03	k: 1493	n:410000
SIGLEC1   410000 perm   150 sec   (2741 perm/sec)   p_kst 3.641463e-03   p_cons 1.475585e-01   p_joint 3.341463e-03

Joint ci ratio: 1.042930e-01	ci left: 3.177493e-03	ci right 3.529413e-03	k: 1407	n:420000
Cons ci ratio: 1.453747e-02	ci left: 1.464977e-01	ci right 1.486453e-01	k: 61979	n:420000
KS ci ratio: 9.990295e-02	ci left: 3.469862e-03	ci right 3.837038e-03	k: 1533	n:420000
SIGLEC1   420000 perm   155 sec   (2716 perm/sec)   p_kst 3.650000e-03   p_cons 1.475690e-01   p_joint 3.350000e-03

Joint ci ratio: 1.061667e-01	ci left: 2.992629e-03	ci right 3.330400e-03	k: 1358	n:430000
Cons ci ratio: 1.436647e-02	ci left: 1.465271e-01	ci right 1.486497e-01	k: 63462	n:430000
KS ci ratio: 9.903630e-02	ci left: 3.450394e-03	ci right 3.812159e-03	k: 1560	n:430000
SIGLEC1   430000 perm   160 sec   (2693 perm/sec)   p_kst 3.627907e-03   p_cons 1.475860e-01   p_joint 3.158140e-03

Joint ci ratio: 1.071639e-01	ci left: 2.869302e-03	ci right 3.196387e-03	k: 1333	n:440000
Cons ci ratio: 1.420047e-02	ci left: 1.465713e-01	ci right 1.486698e-01	k: 64952	n:440000
KS ci ratio: 9.806792e-02	ci left: 3.440693e-03	ci right 3.797711e-03	k: 1591	n:440000
SIGLEC1   440000 perm   165 sec   (2669 perm/sec)   p_kst 3.615909e-03   p_cons 1.476182e-01   p_joint 3.029545e-03

Joint ci ratio: 1.064101e-01	ci left: 2.846633e-03	ci right 3.168708e-03	k: 1352	n:450000
Cons ci ratio: 1.404517e-02	ci left: 1.465227e-01	ci right 1.485974e-01	k: 66401	n:450000
KS ci ratio: 9.748977e-02	ci left: 3.405420e-03	ci right 3.756575e-03	k: 1610	n:450000
SIGLEC1   450000 perm   170 sec   (2646 perm/sec)   p_kst 3.577778e-03   p_cons 1.475578e-01   p_joint 3.004444e-03

Joint ci ratio: 1.046818e-01	ci left: 2.879996e-03	ci right 3.200228e-03	k: 1397	n:460000
Cons ci ratio: 1.388958e-02	ci left: 1.465718e-01	ci right 1.486240e-01	k: 67894	n:460000
KS ci ratio: 9.600974e-02	ci left: 3.437457e-03	ci right 3.786232e-03	k: 1660	n:460000
SIGLEC1   460000 perm   176 sec   (2619 perm/sec)   p_kst 3.608696e-03   p_cons 1.475957e-01   p_joint 3.036957e-03

Joint ci ratio: 1.033950e-01	ci left: 2.891250e-03	ci right 3.208542e-03	k: 1432	n:470000
Cons ci ratio: 1.374033e-02	ci left: 1.465955e-01	ci right 1.486258e-01	k: 69376	n:470000
KS ci ratio: 9.504214e-02	ci left: 3.434932e-03	ci right 3.779743e-03	k: 1694	n:470000
SIGLEC1   470000 perm   181 sec   (2597 perm/sec)   p_kst 3.604255e-03   p_cons 1.476085e-01   p_joint 3.046809e-03

Joint ci ratio: 9.443268e-02	ci left: 3.408116e-03	ci right 3.747920e-03	k: 1716	n:480000
Cons ci ratio: 1.359263e-02	ci left: 1.466766e-01	ci right 1.486860e-01	k: 70886	n:480000
KS ci ratio: 9.377718e-02	ci left: 3.456943e-03	ci right 3.799091e-03	k: 1740	n:480000
SIGLEC1   480000 perm   186 sec   (2575 perm/sec)   p_kst 3.625000e-03   p_cons 1.476792e-01   p_joint 3.575000e-03

Outputting figure to mutsig2_images.part000000000157/SIGLEC1.9_5214_480000_0.003625_0.14768_0.003575.png
                gene_name: SIGLEC1
               theta_stop: 0.094 
                    nperm: 480000 
                     p_ks: 0.0036 
        ci_ks_bounds_left: 0.0035 
       ci_ks_bounds_right: 0.0038 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.0036 
     ci_joint_bounds_left: 0.0034 
    ci_joint_bounds_right: 0.0037 

Current progress: 9 percent done.
SHPRH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.010744e-02	ci left: 2.893427e-01	ci right 3.073749e-01	k: 2983	n:10000
Cons ci ratio: 8.093572e-02	ci left: 1.822537e-01	ci right 1.977273e-01	k: 1899	n:10000
KS ci ratio: 5.420475e-02	ci left: 3.339906e-01	ci right 3.527007e-01	k: 3433	n:10000
SHPRH   10000 perm   2 sec   (4849 perm/sec)   p_kst 3.433000e-01   p_cons 1.899000e-01   p_joint 2.983000e-01

Outputting figure to mutsig2_images.part000000000157/SHPRH.8_5212_10000_0.3433_0.1899_0.2983.png
                gene_name: SHPRH
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 10 percent done.
SHROOM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.527287e-01	ci left: 5.706232e-02	ci right 6.659491e-02	k: 617	n:10000
Cons ci ratio: 1.045149e-02	ci left: 9.286459e-01	ci right 9.384997e-01	k: 9337	n:10000
KS ci ratio: 2.432992e-01	ci left: 2.221701e-02	ci right 2.846368e-02	k: 252	n:10000
SHROOM3   10000 perm   2 sec   (4460 perm/sec)   p_kst 2.520000e-02   p_cons 9.337000e-01   p_joint 6.170000e-02

Joint ci ratio: 8.294693e-02	ci left: 9.626821e-02	ci right 1.046484e-01	k: 2008	n:20000
Cons ci ratio: 7.301441e-03	ci left: 9.316483e-01	ci right 9.385245e-01	k: 18703	n:20000
KS ci ratio: 1.816657e-01	ci left: 2.068037e-02	ci right 2.485997e-02	k: 454	n:20000
SHROOM3   20000 perm   5 sec   (4084 perm/sec)   p_kst 2.270000e-02   p_cons 9.351500e-01   p_joint 1.004000e-01

Joint ci ratio: 8.669482e-02	ci left: 6.102746e-02	ci right 6.659071e-02	k: 1913	n:30000
Cons ci ratio: 5.623911e-03	ci left: 9.391591e-01	ci right 9.444883e-01	k: 28256	n:30000
KS ci ratio: 1.459945e-01	ci left: 2.175113e-02	ci right 2.520867e-02	k: 703	n:30000
SHROOM3   30000 perm   8 sec   (3927 perm/sec)   p_kst 2.343333e-02   p_cons 9.418667e-01   p_joint 6.376667e-02

Joint ci ratio: 7.184125e-02	ci left: 6.678087e-02	ci right 7.178188e-02	k: 2770	n:40000
Cons ci ratio: 4.837498e-03	ci left: 9.402757e-01	ci right 9.448598e-01	k: 37704	n:40000
KS ci ratio: 1.283864e-01	ci left: 2.131102e-02	ci right 2.425883e-02	k: 910	n:40000
SHROOM3   40000 perm   10 sec   (3838 perm/sec)   p_kst 2.275000e-02   p_cons 9.426000e-01   p_joint 6.925000e-02

Joint ci ratio: 6.595827e-02	ci left: 6.379961e-02	ci right 6.817095e-02	k: 3298	n:50000
Cons ci ratio: 4.431985e-03	ci left: 9.378217e-01	ci right 9.420070e-01	k: 46997	n:50000
KS ci ratio: 1.140029e-01	ci left: 2.178158e-02	ci right 2.443419e-02	k: 1154	n:50000
SHROOM3   50000 perm   13 sec   (3769 perm/sec)   p_kst 2.308000e-02   p_cons 9.399400e-01   p_joint 6.596000e-02

Joint ci ratio: 6.132005e-02	ci left: 6.180797e-02	ci right 6.573435e-02	k: 3825	n:60000
Cons ci ratio: 4.044790e-03	ci left: 9.380362e-01	ci right 9.418544e-01	k: 56398	n:60000
KS ci ratio: 1.028239e-01	ci left: 2.243262e-02	ci right 2.488042e-02	k: 1418	n:60000
SHROOM3   60000 perm   16 sec   (3705 perm/sec)   p_kst 2.363333e-02   p_cons 9.399667e-01   p_joint 6.375000e-02

Joint ci ratio: 5.551760e-02	ci left: 6.463693e-02	ci right 6.834196e-02	k: 4653	n:70000
Cons ci ratio: 3.736946e-03	ci left: 9.384180e-01	ci right 9.419454e-01	k: 65814	n:70000
KS ci ratio: 9.494721e-02	ci left: 2.264160e-02	ci right 2.491240e-02	k: 1663	n:70000
SHROOM3   70000 perm   19 sec   (3645 perm/sec)   p_kst 2.375714e-02   p_cons 9.402000e-01   p_joint 6.647143e-02

Outputting figure to mutsig2_images.part000000000157/SHROOM3.8_6035_70000_0.023757_0.9402_0.066471.png
                gene_name: SHROOM3
               theta_stop: 0.095 
                    nperm: 70000 
                     p_ks: 0.024 
        ci_ks_bounds_left: 0.023 
       ci_ks_bounds_right: 0.025 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.066 
     ci_joint_bounds_left: 0.065 
    ci_joint_bounds_right: 0.068 

Current progress: 12 percent done.
SIGLEC10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.991251e-02	ci left: 7.868508e-01	ci right 8.027771e-01	k: 7949	n:10000
Cons ci ratio: 5.180519e-02	ci left: 3.545604e-01	ci right 3.735189e-01	k: 3640	n:10000
KS ci ratio: 2.975552e-02	ci left: 6.248728e-01	ci right 6.438489e-01	k: 6344	n:10000
SIGLEC10   10000 perm   2 sec   (6286 perm/sec)   p_kst 6.344000e-01   p_cons 3.640000e-01   p_joint 7.949000e-01

Outputting figure to mutsig2_images.part000000000157/SIGLEC10.8_2138_10000_0.6344_0.364_0.7949.png
                gene_name: SIGLEC10
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 14 percent done.
SIK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.255174e-02	ci left: 3.479998e-01	ci right 3.668833e-01	k: 3574	n:10000
Cons ci ratio: 1.223412e-02	ci left: 9.055571e-01	ci right 9.168020e-01	k: 9113	n:10000
KS ci ratio: 8.958253e-02	ci left: 1.534534e-01	ci right 1.679449e-01	k: 1606	n:10000
SIK3   10000 perm   2 sec   (5368 perm/sec)   p_kst 1.606000e-01   p_cons 9.113000e-01   p_joint 3.574000e-01

Outputting figure to mutsig2_images.part000000000157/SIK3.8_3884_10000_0.1606_0.9113_0.3574.png
                gene_name: SIK3
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 16 percent done.
SIPA1L3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.751719e-02	ci left: 2.435138e-01	ci right 2.606309e-01	k: 2520	n:10000
Cons ci ratio: 1.230716e-01	ci left: 8.640461e-02	ci right 9.783428e-02	k: 920	n:10000
KS ci ratio: 1.212039e-02	ci left: 9.070994e-01	ci right 9.182588e-01	k: 9128	n:10000
SIPA1L3   10000 perm   2 sec   (5173 perm/sec)   p_kst 9.128000e-01   p_cons 9.200000e-02   p_joint 2.520000e-01

Joint ci ratio: 3.521150e-02	ci left: 3.758068e-01	ci right 3.893273e-01	k: 7651	n:20000
Cons ci ratio: 8.771001e-02	ci left: 8.680364e-02	ci right 9.481578e-02	k: 1815	n:20000
KS ci ratio: 8.630554e-03	ci left: 9.076317e-01	ci right 9.155482e-01	k: 18233	n:20000
SIPA1L3   20000 perm   4 sec   (4708 perm/sec)   p_kst 9.116500e-01   p_cons 9.075000e-02   p_joint 3.825500e-01

Outputting figure to mutsig2_images.part000000000157/SIPA1L3.8_5426_20000_0.91165_0.09075_0.38255.png
                gene_name: SIPA1L3
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.091 
      ci_cons_bounds_left: 0.087 
     ci_cons_bounds_right: 0.095 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.39 

Current progress: 17 percent done.
SHANK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.179031e-02	ci left: 5.935323e-01	ci right 6.128076e-01	k: 6032	n:10000
Cons ci ratio: 8.205725e-02	ci left: 1.781208e-01	ci right 1.934627e-01	k: 1857	n:10000
KS ci ratio: 2.128515e-02	ci left: 7.639523e-01	ci right 7.804888e-01	k: 7723	n:10000
SHANK1   10000 perm   2 sec   (4863 perm/sec)   p_kst 7.723000e-01   p_cons 1.857000e-01   p_joint 6.032000e-01

Outputting figure to mutsig2_images.part000000000157/SHANK1.7_6578_10000_0.7723_0.1857_0.6032.png
                gene_name: SHANK1
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 19 percent done.
SHROOM4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.333818e-01	ci left: 7.417406e-02	ci right 8.487241e-02	k: 794	n:10000
Cons ci ratio: 6.211914e-02	ci left: 2.758690e-01	ci right 2.936566e-01	k: 2847	n:10000
KS ci ratio: 1.416829e-01	ci left: 6.604181e-02	ci right 7.620974e-02	k: 710	n:10000
SHROOM4   10000 perm   2 sec   (5099 perm/sec)   p_kst 7.100000e-02   p_cons 2.847000e-01   p_joint 7.940000e-02

Joint ci ratio: 8.912054e-02	ci left: 8.425585e-02	ci right 9.216434e-02	k: 1763	n:20000
Cons ci ratio: 4.440432e-02	ci left: 2.741322e-01	ci right 2.866317e-01	k: 5607	n:20000
KS ci ratio: 9.973475e-02	ci left: 6.811311e-02	ci right 7.531201e-02	k: 1433	n:20000
SHROOM4   20000 perm   4 sec   (4653 perm/sec)   p_kst 7.165000e-02   p_cons 2.803500e-01   p_joint 8.815000e-02

Outputting figure to mutsig2_images.part000000000157/SHROOM4.7_4518_20000_0.07165_0.28035_0.08815.png
                gene_name: SHROOM4
               theta_stop: 0.100 
                    nperm: 20000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.075 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.088 
     ci_joint_bounds_left: 0.084 
    ci_joint_bounds_right: 0.092 

Current progress: 21 percent done.
SIPA1L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.343015e-01	ci left: 7.320496e-02	ci right 8.384211e-02	k: 784	n:10000
Cons ci ratio: 3.769094e-01	ci left: 8.686342e-03	ci right 1.280614e-02	k: 106	n:10000
KS ci ratio: 4.318138e-02	ci left: 4.419113e-01	ci right 4.615169e-01	k: 4517	n:10000
SIPA1L1   10000 perm   2 sec   (4975 perm/sec)   p_kst 4.517000e-01   p_cons 1.060000e-02   p_joint 7.840000e-02

Joint ci ratio: 1.234409e-01	ci left: 4.502977e-02	ci right 5.100252e-02	k: 959	n:20000
Cons ci ratio: 2.815335e-01	ci left: 8.248793e-03	ci right 1.099660e-02	k: 191	n:20000
KS ci ratio: 3.093089e-02	ci left: 4.384454e-01	ci right 4.522705e-01	k: 8907	n:20000
SIPA1L1   20000 perm   4 sec   (4518 perm/sec)   p_kst 4.453500e-01   p_cons 9.550000e-03   p_joint 4.795000e-02

Joint ci ratio: 1.056181e-01	ci left: 4.157680e-02	ci right 4.624538e-02	k: 1316	n:30000
Cons ci ratio: 2.282778e-01	ci left: 8.621951e-03	ci right 1.087452e-02	k: 291	n:30000
KS ci ratio: 2.528383e-02	ci left: 4.391656e-01	ci right 4.504451e-01	k: 13344	n:30000
SIPA1L1   30000 perm   7 sec   (4355 perm/sec)   p_kst 4.448000e-01   p_cons 9.700000e-03   p_joint 4.386667e-02

Joint ci ratio: 9.946929e-02	ci left: 3.551293e-02	ci right 3.925462e-02	k: 1494	n:40000
Cons ci ratio: 2.022928e-01	ci left: 8.358856e-03	ci right 1.026340e-02	k: 371	n:40000
KS ci ratio: 2.191338e-02	ci left: 4.395471e-01	ci right 4.493109e-01	k: 17777	n:40000
SIPA1L1   40000 perm   9 sec   (4249 perm/sec)   p_kst 4.444250e-01   p_cons 9.275000e-03   p_joint 3.735000e-02

Joint ci ratio: 9.736535e-02	ci left: 2.986910e-02	ci right 3.294562e-02	k: 1569	n:50000
Cons ci ratio: 1.858398e-01	ci left: 7.999992e-03	ci right 9.657789e-03	k: 440	n:50000
KS ci ratio: 1.946434e-02	ci left: 4.434944e-01	ci right 4.522316e-01	k: 22393	n:50000
SIPA1L1   50000 perm   12 sec   (4139 perm/sec)   p_kst 4.478600e-01   p_cons 8.800000e-03   p_joint 3.138000e-02

Joint ci ratio: 9.472498e-02	ci left: 2.643397e-02	ci right 2.907864e-02	k: 1664	n:60000
Cons ci ratio: 1.718233e-01	ci left: 7.860724e-03	ci right 9.354058e-03	k: 515	n:60000
KS ci ratio: 1.774496e-02	ci left: 4.445314e-01	ci right 4.525069e-01	k: 26911	n:60000
SIPA1L1   60000 perm   15 sec   (4058 perm/sec)   p_kst 4.485167e-01   p_cons 8.583333e-03   p_joint 2.773333e-02

Joint ci ratio: 8.163932e-02	ci left: 3.058245e-02	ci right 3.319940e-02	k: 2231	n:70000
Cons ci ratio: 1.598833e-01	ci left: 7.833220e-03	ci right 9.207987e-03	k: 595	n:70000
KS ci ratio: 1.637528e-02	ci left: 4.464380e-01	ci right 4.538232e-01	k: 31509	n:70000
SIPA1L1   70000 perm   18 sec   (3994 perm/sec)   p_kst 4.501286e-01   p_cons 8.500000e-03   p_joint 3.187143e-02

Joint ci ratio: 7.634899e-02	ci left: 3.068073e-02	ci right 3.312837e-02	k: 2551	n:80000
Cons ci ratio: 1.524206e-01	ci left: 7.574693e-03	ci right 8.836363e-03	k: 655	n:80000
KS ci ratio: 1.531164e-02	ci left: 4.468730e-01	ci right 4.537806e-01	k: 36026	n:80000
SIPA1L1   80000 perm   20 sec   (3903 perm/sec)   p_kst 4.503250e-01   p_cons 8.187500e-03   p_joint 3.188750e-02

Joint ci ratio: 6.247423e-02	ci left: 4.060023e-02	ci right 4.322940e-02	k: 3771	n:90000
Cons ci ratio: 1.444953e-01	ci left: 7.524739e-03	ci right 8.707295e-03	k: 729	n:90000
KS ci ratio: 1.443964e-02	ci left: 4.469457e-01	ci right 4.534575e-01	k: 40518	n:90000
SIPA1L1   90000 perm   23 sec   (3845 perm/sec)   p_kst 4.502000e-01   p_cons 8.100000e-03   p_joint 4.190000e-02

Joint ci ratio: 6.439718e-02	ci left: 3.457820e-02	ci right 3.688883e-02	k: 3572	n:100000
Cons ci ratio: 1.368349e-01	ci left: 7.582732e-03	ci right 8.706078e-03	k: 813	n:100000
KS ci ratio: 1.368456e-02	ci left: 4.476226e-01	ci right 4.538003e-01	k: 45071	n:100000
SIPA1L1   100000 perm   26 sec   (3790 perm/sec)   p_kst 4.507100e-01   p_cons 8.130000e-03   p_joint 3.572000e-02

Joint ci ratio: 5.864172e-02	ci left: 3.789046e-02	ci right 4.018847e-02	k: 4293	n:110000
Cons ci ratio: 1.304964e-01	ci left: 7.605146e-03	ci right 8.675576e-03	k: 894	n:110000
KS ci ratio: 1.304824e-02	ci left: 4.477473e-01	ci right 4.536371e-01	k: 49576	n:110000
SIPA1L1   110000 perm   29 sec   (3739 perm/sec)   p_kst 4.506909e-01   p_cons 8.127273e-03   p_joint 3.902727e-02

Joint ci ratio: 5.864890e-02	ci left: 3.483802e-02	ci right 3.695115e-02	k: 4306	n:120000
Cons ci ratio: 1.258118e-01	ci left: 7.519865e-03	ci right 8.537459e-03	k: 962	n:120000
KS ci ratio: 1.249821e-02	ci left: 4.476570e-01	ci right 4.532954e-01	k: 54057	n:120000
SIPA1L1   120000 perm   33 sec   (3686 perm/sec)   p_kst 4.504750e-01   p_cons 8.016667e-03   p_joint 3.588333e-02

Joint ci ratio: 5.115649e-02	ci left: 4.210878e-02	ci right 4.432704e-02	k: 5617	n:130000
Cons ci ratio: 1.211839e-01	ci left: 7.500512e-03	ci right 8.475473e-03	k: 1037	n:130000
KS ci ratio: 1.203775e-02	ci left: 4.465395e-01	ci right 4.519550e-01	k: 58402	n:130000
SIPA1L1   130000 perm   36 sec   (3641 perm/sec)   p_kst 4.492462e-01   p_cons 7.976923e-03   p_joint 4.320769e-02

Joint ci ratio: 4.951913e-02	ci left: 4.178095e-02	ci right 4.390946e-02	k: 5997	n:140000
Cons ci ratio: 1.159859e-01	ci left: 7.623237e-03	ci right 8.568735e-03	k: 1132	n:140000
KS ci ratio: 1.160180e-02	ci left: 4.465562e-01	ci right 4.517744e-01	k: 62883	n:140000
SIPA1L1   140000 perm   39 sec   (3592 perm/sec)   p_kst 4.491643e-01   p_cons 8.085714e-03   p_joint 4.283571e-02

Joint ci ratio: 4.138640e-02	ci left: 5.526421e-02	ci right 5.760630e-02	k: 8464	n:150000
Cons ci ratio: 1.125178e-01	ci left: 7.574818e-03	ci right 8.484353e-03	k: 1203	n:150000
KS ci ratio: 1.120805e-02	ci left: 4.466605e-01	ci right 4.517015e-01	k: 67377	n:150000
SIPA1L1   150000 perm   42 sec   (3547 perm/sec)   p_kst 4.491800e-01   p_cons 8.020000e-03   p_joint 5.642667e-02

Joint ci ratio: 4.169300e-02	ci left: 5.126363e-02	ci right 5.345263e-02	k: 8376	n:160000
Cons ci ratio: 1.090420e-01	ci left: 7.575385e-03	ci right 8.455083e-03	k: 1281	n:160000
KS ci ratio: 1.086530e-02	ci left: 4.461421e-01	ci right 4.510223e-01	k: 71773	n:160000
SIPA1L1   160000 perm   46 sec   (3504 perm/sec)   p_kst 4.485812e-01   p_cons 8.006250e-03   p_joint 5.235000e-02

Joint ci ratio: 4.076709e-02	ci left: 5.052983e-02	ci right 5.263844e-02	k: 8768	n:170000
Cons ci ratio: 1.059481e-01	ci left: 7.564811e-03	ci right 8.416802e-03	k: 1357	n:170000
KS ci ratio: 1.054639e-02	ci left: 4.459574e-01	ci right 4.506914e-01	k: 76215	n:170000
SIPA1L1   170000 perm   49 sec   (3460 perm/sec)   p_kst 4.483235e-01   p_cons 7.982353e-03   p_joint 5.157647e-02

Joint ci ratio: 4.051154e-02	ci left: 4.844191e-02	ci right 5.045041e-02	k: 8899	n:180000
Cons ci ratio: 1.024929e-01	ci left: 7.647760e-03	ci right 8.479312e-03	k: 1450	n:180000
KS ci ratio: 1.024928e-02	ci left: 4.460228e-01	ci right 4.506233e-01	k: 80698	n:180000
SIPA1L1   180000 perm   53 sec   (3419 perm/sec)   p_kst 4.483222e-01   p_cons 8.055556e-03   p_joint 4.943889e-02

Joint ci ratio: 4.169774e-02	ci left: 4.351982e-02	ci right 4.537832e-02	k: 8444	n:190000
Cons ci ratio: 1.000101e-01	ci left: 7.619722e-03	ci right 8.426976e-03	k: 1523	n:190000
KS ci ratio: 9.976581e-03	ci left: 4.460515e-01	ci right 4.505291e-01	k: 85175	n:190000
SIPA1L1   190000 perm   56 sec   (3380 perm/sec)   p_kst 4.482895e-01   p_cons 8.015789e-03   p_joint 4.444211e-02

Joint ci ratio: 4.033771e-02	ci left: 4.417975e-02	ci right 4.600347e-02	k: 9017	n:200000
Cons ci ratio: 9.748421e-02	ci left: 7.628859e-03	ci right 8.415501e-03	k: 1603	n:200000
KS ci ratio: 9.716496e-03	ci left: 4.464885e-01	ci right 4.508530e-01	k: 89734	n:200000
SIPA1L1   200000 perm   60 sec   (3340 perm/sec)   p_kst 4.486700e-01   p_cons 8.015000e-03   p_joint 4.508500e-02

Outputting figure to mutsig2_images.part000000000157/SIPA1L1.7_5499_200000_0.44867_0.008015_0.045085.png
                gene_name: SIPA1L1
               theta_stop: 0.097 
                    nperm: 200000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.0080 
      ci_cons_bounds_left: 0.0076 
     ci_cons_bounds_right: 0.0084 
                  p_joint: 0.045 
     ci_joint_bounds_left: 0.044 
    ci_joint_bounds_right: 0.046 

Current progress: 22 percent done.
SH3RF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.983219e-02	ci left: 2.311621e-01	ci right 2.479899e-01	k: 2395	n:10000
Cons ci ratio: 1.307207e-01	ci left: 7.708281e-02	ci right 8.796184e-02	k: 824	n:10000
KS ci ratio: 7.705195e-02	ci left: 1.976171e-01	ci right 2.135548e-01	k: 2055	n:10000
SH3RF2   10000 perm   2 sec   (6237 perm/sec)   p_kst 2.055000e-01   p_cons 8.240000e-02   p_joint 2.395000e-01

Joint ci ratio: 6.533036e-02	ci left: 1.475434e-01	ci right 1.575579e-01	k: 3050	n:20000
Cons ci ratio: 9.406027e-02	ci left: 7.612963e-02	ci right 8.369304e-02	k: 1597	n:20000
KS ci ratio: 5.455978e-02	ci left: 1.995222e-01	ci right 2.107636e-01	k: 4102	n:20000
SH3RF2   20000 perm   4 sec   (5634 perm/sec)   p_kst 2.051000e-01   p_cons 7.985000e-02   p_joint 1.525000e-01

Outputting figure to mutsig2_images.part000000000157/SH3RF2.6_2226_20000_0.2051_0.07985_0.1525.png
                gene_name: SH3RF2
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.080 
      ci_cons_bounds_left: 0.076 
     ci_cons_bounds_right: 0.084 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 24 percent done.
SHANK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.851016e-02	ci left: 6.445828e-01	ci right 6.633275e-01	k: 6540	n:10000
Cons ci ratio: 7.019825e-02	ci left: 2.292855e-01	ci right 2.460676e-01	k: 2376	n:10000
KS ci ratio: 2.608320e-02	ci left: 6.839552e-01	ci right 7.021322e-01	k: 6931	n:10000
SHANK3   10000 perm   2 sec   (5035 perm/sec)   p_kst 6.931000e-01   p_cons 2.376000e-01   p_joint 6.540000e-01

Outputting figure to mutsig2_images.part000000000157/SHANK3.6_5336_10000_0.6931_0.2376_0.654.png
                gene_name: SHANK3
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 26 percent done.
SIGLEC9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.533159e-02	ci left: 6.963564e-01	ci right 7.143239e-01	k: 7054	n:10000
Cons ci ratio: 3.202320e-02	ci left: 5.900191e-01	ci right 6.093228e-01	k: 5997	n:10000
KS ci ratio: 3.508232e-02	ci left: 5.453952e-01	ci right 5.649726e-01	k: 5552	n:10000
SIGLEC9   10000 perm   2 sec   (6646 perm/sec)   p_kst 5.552000e-01   p_cons 5.997000e-01   p_joint 7.054000e-01

Outputting figure to mutsig2_images.part000000000157/SIGLEC9.6_1420_10000_0.5552_0.5997_0.7054.png
                gene_name: SIGLEC9
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.71 

Current progress: 28 percent done.
SIRPA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.815110e-02	ci left: 3.888849e-01	ci right 4.081742e-01	k: 3985	n:10000
Cons ci ratio: 7.221246e-02	ci left: 2.193138e-01	ci right 2.358452e-01	k: 2275	n:10000
KS ci ratio: 2.632864e-02	ci left: 6.799240e-01	ci right 6.981658e-01	k: 6891	n:10000
SIRPA   10000 perm   2 sec   (6191 perm/sec)   p_kst 6.891000e-01   p_cons 2.275000e-01   p_joint 3.985000e-01

Outputting figure to mutsig2_images.part000000000157/SIRPA.6_1547_10000_0.6891_0.2275_0.3985.png
                gene_name: SIRPA
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 29 percent done.
SH3TC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.229981e-01	ci left: 8.650182e-02	ci right 9.793702e-02	k: 921	n:10000
Cons ci ratio: 2.391178e-02	ci left: 7.199706e-01	ci right 7.374960e-01	k: 7288	n:10000
KS ci ratio: 2.750894e-01	ci left: 1.716007e-02	ci right 2.272454e-02	k: 198	n:10000
SH3TC1   10000 perm   2 sec   (5528 perm/sec)   p_kst 1.980000e-02   p_cons 7.288000e-01   p_joint 9.210000e-02

Joint ci ratio: 8.066715e-02	ci left: 1.013242e-01	ci right 1.098908e-01	k: 2111	n:20000
Cons ci ratio: 1.719738e-02	ci left: 7.157843e-01	ci right 7.282511e-01	k: 14441	n:20000
KS ci ratio: 2.018924e-01	ci left: 1.663022e-02	ci right 2.041161e-02	k: 369	n:20000
SH3TC1   20000 perm   4 sec   (5022 perm/sec)   p_kst 1.845000e-02   p_cons 7.220500e-01   p_joint 1.055500e-01

Joint ci ratio: 7.713315e-02	ci left: 7.620107e-02	ci right 8.234736e-02	k: 2377	n:30000
Cons ci ratio: 1.396884e-02	ci left: 7.190375e-01	ci right 7.291857e-01	k: 21724	n:30000
KS ci ratio: 1.643936e-01	ci left: 1.706924e-02	ci right 2.015832e-02	k: 557	n:30000
SH3TC1   30000 perm   6 sec   (4809 perm/sec)   p_kst 1.856667e-02   p_cons 7.241333e-01   p_joint 7.923333e-02

Joint ci ratio: 8.118442e-02	ci left: 5.283474e-02	ci right 5.733012e-02	k: 2202	n:40000
Cons ci ratio: 1.205452e-02	ci left: 7.211482e-01	ci right 7.299190e-01	k: 29022	n:40000
KS ci ratio: 1.423696e-01	ci left: 1.727438e-02	ci right 1.994616e-02	k: 743	n:40000
SH3TC1   40000 perm   9 sec   (4661 perm/sec)   p_kst 1.857500e-02   p_cons 7.255500e-01   p_joint 5.505000e-02

Joint ci ratio: 7.407323e-02	ci left: 5.107194e-02	ci right 5.502015e-02	k: 2651	n:50000
Cons ci ratio: 1.072860e-02	ci left: 7.235943e-01	ci right 7.314193e-01	k: 36376	n:50000
KS ci ratio: 1.278307e-01	ci left: 1.727878e-02	ci right 1.965759e-02	k: 922	n:50000
SH3TC1   50000 perm   11 sec   (4556 perm/sec)   p_kst 1.844000e-02   p_cons 7.275200e-01   p_joint 5.302000e-02

Joint ci ratio: 7.199479e-02	ci left: 4.538570e-02	ci right 4.879161e-02	k: 2824	n:60000
Cons ci ratio: 9.564815e-03	ci left: 7.332566e-01	ci right 7.403204e-01	k: 44208	n:60000
KS ci ratio: 1.156130e-01	ci left: 1.771204e-02	ci right 1.990152e-02	k: 1127	n:60000
SH3TC1   60000 perm   13 sec   (4470 perm/sec)   p_kst 1.878333e-02   p_cons 7.368000e-01   p_joint 4.706667e-02

Joint ci ratio: 6.638873e-02	ci left: 4.586562e-02	ci right 4.902917e-02	k: 3320	n:70000
Cons ci ratio: 8.837366e-03	ci left: 7.343097e-01	ci right 7.408421e-01	k: 51631	n:70000
KS ci ratio: 1.070785e-01	ci left: 1.777888e-02	ci right 1.980414e-02	k: 1314	n:70000
SH3TC1   70000 perm   16 sec   (4390 perm/sec)   p_kst 1.877143e-02   p_cons 7.375857e-01   p_joint 4.742857e-02

Joint ci ratio: 6.259104e-02	ci left: 4.527274e-02	ci right 4.821024e-02	k: 3738	n:80000
Cons ci ratio: 8.256956e-03	ci left: 7.349757e-01	ci right 7.410820e-01	k: 59043	n:80000
KS ci ratio: 1.006711e-01	ci left: 1.766282e-02	ci right 1.954732e-02	k: 1487	n:80000
SH3TC1   80000 perm   19 sec   (4308 perm/sec)   p_kst 1.858750e-02   p_cons 7.380375e-01   p_joint 4.672500e-02

Joint ci ratio: 6.042941e-02	ci left: 4.331528e-02	ci right 4.602528e-02	k: 4019	n:90000
Cons ci ratio: 7.779004e-03	ci left: 7.354374e-01	ci right 7.411917e-01	k: 66449	n:90000
KS ci ratio: 9.436948e-02	ci left: 1.792265e-02	ci right 1.970856e-02	k: 1692	n:90000
SH3TC1   90000 perm   21 sec   (4241 perm/sec)   p_kst 1.880000e-02   p_cons 7.383222e-01   p_joint 4.465556e-02

Outputting figure to mutsig2_images.part000000000157/SH3TC1.5_4079_90000_0.0188_0.73832_0.044656.png
                gene_name: SH3TC1
               theta_stop: 0.094 
                    nperm: 90000 
                     p_ks: 0.019 
        ci_ks_bounds_left: 0.018 
       ci_ks_bounds_right: 0.020 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.045 
     ci_joint_bounds_left: 0.043 
    ci_joint_bounds_right: 0.046 

Current progress: 31 percent done.
SHC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.411390e-02	ci left: 2.632958e-01	ci right 2.808372e-01	k: 2720	n:10000
Cons ci ratio: 1.238134e-01	ci left: 8.543267e-02	ci right 9.680682e-02	k: 910	n:10000
KS ci ratio: 1.280774e-02	ci left: 8.976473e-01	ci right 9.093165e-01	k: 9036	n:10000
SHC4   10000 perm   1 sec   (6670 perm/sec)   p_kst 9.036000e-01   p_cons 9.100000e-02   p_joint 2.720000e-01

Joint ci ratio: 4.007450e-02	ci left: 3.170673e-01	ci right 3.300840e-01	k: 6471	n:20000
Cons ci ratio: 8.895473e-02	ci left: 8.454978e-02	ci right 9.247033e-02	k: 1769	n:20000
KS ci ratio: 9.005584e-03	ci left: 9.003937e-01	ci right 9.085883e-01	k: 18091	n:20000
SHC4   20000 perm   3 sec   (5970 perm/sec)   p_kst 9.045500e-01   p_cons 8.845000e-02   p_joint 3.235500e-01

Outputting figure to mutsig2_images.part000000000157/SHC4.5_1941_20000_0.90455_0.08845_0.32355.png
                gene_name: SHC4
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.088 
      ci_cons_bounds_left: 0.085 
     ci_cons_bounds_right: 0.092 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 33 percent done.
SHROOM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.539254e-02	ci left: 6.953478e-01	ci right 7.133330e-01	k: 7044	n:10000
KS ci ratio: 2.343441e-02	ci left: 7.279497e-01	ci right 7.453122e-01	k: 7367	n:10000
SHROOM2   10000 perm   2 sec   (5223 perm/sec)   p_kst 7.367000e-01   p_cons 7.044000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000157/SHROOM2.5_4891_10000_0.7367_0.7044_1.png
                gene_name: SHROOM2
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 34 percent done.
SIGLEC8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.440813e-02	ci left: 7.116922e-01	ci right 7.293792e-01	k: 7206	n:10000
Cons ci ratio: 1.928796e-02	ci left: 7.971977e-01	ci right 8.128242e-01	k: 8051	n:10000
KS ci ratio: 4.488595e-02	ci left: 4.228604e-01	ci right 4.423788e-01	k: 4326	n:10000
SIGLEC8   10000 perm   2 sec   (6389 perm/sec)   p_kst 4.326000e-01   p_cons 8.051000e-01   p_joint 7.206000e-01

Outputting figure to mutsig2_images.part000000000157/SIGLEC8.5_1528_10000_0.4326_0.8051_0.7206.png
                gene_name: SIGLEC8
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 36 percent done.
SIN3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.481309e-02	ci left: 2.072778e-01	ci right 2.234884e-01	k: 2153	n:10000
Cons ci ratio: 1.728722e-01	ci left: 4.465920e-02	ci right 5.320602e-02	k: 488	n:10000
KS ci ratio: 3.850270e-02	ci left: 4.990503e-01	ci right 5.187445e-01	k: 5089	n:10000
SIN3A   10000 perm   2 sec   (5297 perm/sec)   p_kst 5.089000e-01   p_cons 4.880000e-02   p_joint 2.153000e-01

Joint ci ratio: 5.157609e-02	ci left: 2.182868e-01	ci right 2.298935e-01	k: 4481	n:20000
Cons ci ratio: 1.255149e-01	ci left: 4.357437e-02	ci right 4.945837e-02	k: 929	n:20000
KS ci ratio: 2.703211e-02	ci left: 5.055463e-01	ci right 5.194501e-01	k: 10250	n:20000
SIN3A   20000 perm   4 sec   (4757 perm/sec)   p_kst 5.125000e-01   p_cons 4.645000e-02   p_joint 2.240500e-01

Joint ci ratio: 4.644761e-02	ci left: 1.873911e-01	ci right 1.963353e-01	k: 5755	n:30000
Cons ci ratio: 1.009741e-01	ci left: 4.541306e-02	ci right 5.027498e-02	k: 1434	n:30000
KS ci ratio: 2.266572e-02	ci left: 4.935590e-01	ci right 5.049078e-01	k: 14977	n:30000
SIN3A   30000 perm   7 sec   (4604 perm/sec)   p_kst 4.992333e-01   p_cons 4.780000e-02   p_joint 1.918333e-01

Joint ci ratio: 4.536968e-02	ci left: 1.536950e-01	ci right 1.608548e-01	k: 6290	n:40000
Cons ci ratio: 8.882856e-02	ci left: 4.435910e-02	ci right 4.850707e-02	k: 1856	n:40000
KS ci ratio: 1.951322e-02	ci left: 4.972876e-01	ci right 5.071121e-01	k: 20088	n:40000
SIN3A   40000 perm   9 sec   (4484 perm/sec)   p_kst 5.022000e-01   p_cons 4.640000e-02   p_joint 1.572500e-01

Outputting figure to mutsig2_images.part000000000157/SIN3A.5_3902_40000_0.5022_0.0464_0.15725.png
                gene_name: SIN3A
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.046 
      ci_cons_bounds_left: 0.044 
     ci_cons_bounds_right: 0.049 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 38 percent done.
SHC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.941686e-02	ci left: 1.539442e-01	ci right 1.684538e-01	k: 1611	n:10000
Cons ci ratio: 5.131657e-02	ci left: 3.589352e-01	ci right 3.779415e-01	k: 3684	n:10000
KS ci ratio: 1.154896e-01	ci left: 9.730358e-02	ci right 1.093286e-01	k: 1032	n:10000
SHC2   10000 perm   1 sec   (6941 perm/sec)   p_kst 1.032000e-01   p_cons 3.684000e-01   p_joint 1.611000e-01

Joint ci ratio: 6.190544e-02	ci left: 1.618052e-01	ci right 1.721918e-01	k: 3339	n:20000
Cons ci ratio: 3.568189e-02	ci left: 3.695793e-01	ci right 3.830567e-01	k: 7526	n:20000
KS ci ratio: 8.197512e-02	ci left: 9.837857e-02	ci right 1.068374e-01	k: 2051	n:20000
SHC2   20000 perm   3 sec   (6207 perm/sec)   p_kst 1.025500e-01   p_cons 3.763000e-01   p_joint 1.669500e-01

Outputting figure to mutsig2_images.part000000000157/SHC2.4_1797_20000_0.10255_0.3763_0.16695.png
                gene_name: SHC2
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.098 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 40 percent done.
SHOX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.107331e-02	ci left: 7.674962e-01	ci right 7.839429e-01	k: 7758	n:10000
Cons ci ratio: 5.757927e-02	ci left: 3.074877e-01	ci right 3.258192e-01	k: 3166	n:10000
KS ci ratio: 2.347064e-02	ci left: 7.273436e-01	ci right 7.447187e-01	k: 7361	n:10000
SHOX   10000 perm   1 sec   (7432 perm/sec)   p_kst 7.361000e-01   p_cons 3.166000e-01   p_joint 7.758000e-01

Outputting figure to mutsig2_images.part000000000157/SHOX.4_948_10000_0.7361_0.3166_0.7758.png
                gene_name: SHOX
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 41 percent done.
SIDT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.321256e-02	ci left: 2.145771e-01	ci right 2.309847e-01	k: 2227	n:10000
Cons ci ratio: 1.445485e-01	ci left: 6.352868e-02	ci right 7.352445e-02	k: 684	n:10000
KS ci ratio: 3.340178e-02	ci left: 5.695523e-01	ci right 5.890015e-01	k: 5793	n:10000
SIDT1   10000 perm   2 sec   (6066 perm/sec)   p_kst 5.793000e-01   p_cons 6.840000e-02   p_joint 2.227000e-01

Joint ci ratio: 5.128859e-02	ci left: 2.202188e-01	ci right 2.318610e-01	k: 4520	n:20000
Cons ci ratio: 1.025756e-01	ci left: 6.454903e-02	ci right 7.157718e-02	k: 1360	n:20000
KS ci ratio: 2.278207e-02	ci left: 5.899629e-01	ci right 6.036089e-01	k: 11936	n:20000
SIDT1   20000 perm   4 sec   (5476 perm/sec)   p_kst 5.968000e-01   p_cons 6.800000e-02   p_joint 2.260000e-01

Joint ci ratio: 4.886317e-02	ci left: 1.722997e-01	ci right 1.809630e-01	k: 5298	n:30000
Cons ci ratio: 8.300312e-02	ci left: 6.632057e-02	ci right 7.209653e-02	k: 2075	n:30000
KS ci ratio: 1.860568e-02	ci left: 5.911231e-01	ci right 6.022582e-01	k: 17901	n:30000
SIDT1   30000 perm   6 sec   (5223 perm/sec)   p_kst 5.967000e-01   p_cons 6.916667e-02   p_joint 1.766000e-01

Outputting figure to mutsig2_images.part000000000157/SIDT1.4_2584_30000_0.5967_0.069167_0.1766.png
                gene_name: SIDT1
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.069 
      ci_cons_bounds_left: 0.066 
     ci_cons_bounds_right: 0.072 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 43 percent done.
SIGLEC12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.530722e-02	ci left: 6.967598e-01	ci right 7.147202e-01	k: 7058	n:10000
Cons ci ratio: 2.506374e-02	ci left: 7.007944e-01	ci right 7.186833e-01	k: 7098	n:10000
KS ci ratio: 4.493169e-02	ci left: 4.223619e-01	ci right 4.418776e-01	k: 4321	n:10000
SIGLEC12   10000 perm   2 sec   (6523 perm/sec)   p_kst 4.321000e-01   p_cons 7.098000e-01   p_joint 7.058000e-01

Outputting figure to mutsig2_images.part000000000157/SIGLEC12.4_1893_10000_0.4321_0.7098_0.7058.png
                gene_name: SIGLEC12
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.71 

Current progress: 45 percent done.
SIRPB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.562625e-01	ci left: 5.455711e-02	ci right 6.390171e-02	k: 591	n:10000
Cons ci ratio: 5.256318e-02	ci left: 3.479005e-01	ci right 3.667827e-01	k: 3573	n:10000
KS ci ratio: 2.571973e-01	ci left: 1.977670e-02	ci right 2.570584e-02	k: 226	n:10000
SIRPB1   10000 perm   1 sec   (6726 perm/sec)   p_kst 2.260000e-02   p_cons 3.573000e-01   p_joint 5.910000e-02

Joint ci ratio: 1.365920e-01	ci left: 3.684265e-02	ci right 4.229226e-02	k: 790	n:20000
Cons ci ratio: 3.709900e-02	ci left: 3.515510e-01	ci right 3.648902e-01	k: 7164	n:20000
KS ci ratio: 1.804519e-01	ci left: 2.096705e-02	ci right 2.517319e-02	k: 460	n:20000
SIRPB1   20000 perm   3 sec   (5898 perm/sec)   p_kst 2.300000e-02   p_cons 3.582000e-01   p_joint 3.950000e-02

Joint ci ratio: 7.619743e-02	ci left: 7.796940e-02	ci right 8.417868e-02	k: 2431	n:30000
Cons ci ratio: 2.871961e-02	ci left: 3.775605e-01	ci right 3.885955e-01	k: 11492	n:30000
KS ci ratio: 1.472850e-01	ci left: 2.136549e-02	ci right 2.479440e-02	k: 691	n:30000
SIRPB1   30000 perm   5 sec   (5609 perm/sec)   p_kst 2.303333e-02   p_cons 3.830667e-01   p_joint 8.103333e-02

Joint ci ratio: 7.669809e-02	ci left: 5.894408e-02	ci right 6.366985e-02	k: 2451	n:40000
Cons ci ratio: 2.480100e-02	ci left: 3.796538e-01	ci right 3.892130e-01	k: 15377	n:40000
KS ci ratio: 1.279559e-01	ci left: 2.145631e-02	ci right 2.441351e-02	k: 916	n:40000
SIRPB1   40000 perm   7 sec   (5455 perm/sec)   p_kst 2.290000e-02   p_cons 3.844250e-01   p_joint 6.127500e-02

Joint ci ratio: 7.068826e-02	ci left: 5.588822e-02	ci right 6.000329e-02	k: 2896	n:50000
Cons ci ratio: 2.224796e-02	ci left: 3.787759e-01	ci right 3.873177e-01	k: 19152	n:50000
KS ci ratio: 1.153388e-01	ci left: 2.127617e-02	ci right 2.389966e-02	k: 1128	n:50000
SIRPB1   50000 perm   9 sec   (5287 perm/sec)   p_kst 2.256000e-02   p_cons 3.830400e-01   p_joint 5.792000e-02

Joint ci ratio: 7.452122e-02	ci left: 4.243816e-02	ci right 4.573945e-02	k: 2644	n:60000
Cons ci ratio: 2.146106e-02	ci left: 3.534975e-01	ci right 3.611829e-01	k: 21440	n:60000
KS ci ratio: 1.056412e-01	ci left: 2.124698e-02	ci right 2.363286e-02	k: 1345	n:60000
SIRPB1   60000 perm   12 sec   (5178 perm/sec)   p_kst 2.241667e-02   p_cons 3.573333e-01   p_joint 4.406667e-02

Joint ci ratio: 6.927364e-02	ci left: 4.222551e-02	ci right 4.526960e-02	k: 3061	n:70000
Cons ci ratio: 1.982682e-02	ci left: 3.547609e-01	ci right 3.618794e-01	k: 25082	n:70000
KS ci ratio: 9.768824e-02	ci left: 2.138617e-02	ci right 2.359651e-02	k: 1573	n:70000
SIRPB1   70000 perm   14 sec   (5063 perm/sec)   p_kst 2.247143e-02   p_cons 3.583143e-01   p_joint 4.372857e-02

Outputting figure to mutsig2_images.part000000000157/SIRPB1.4_2354_70000_0.022471_0.35831_0.043729.png
                gene_name: SIRPB1
               theta_stop: 0.098 
                    nperm: 70000 
                     p_ks: 0.022 
        ci_ks_bounds_left: 0.021 
       ci_ks_bounds_right: 0.024 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.044 
     ci_joint_bounds_left: 0.042 
    ci_joint_bounds_right: 0.045 

Current progress: 47 percent done.
SIRPG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.682802e-02	ci left: 5.212613e-01	ci right 5.409206e-01	k: 5311	n:10000
Cons ci ratio: 4.890240e-02	ci left: 3.815183e-01	ci right 4.007452e-01	k: 3911	n:10000
KS ci ratio: 4.870791e-02	ci left: 3.834095e-01	ci right 4.026528e-01	k: 3930	n:10000
SIRPG   10000 perm   1 sec   (6784 perm/sec)   p_kst 3.930000e-01   p_cons 3.911000e-01   p_joint 5.311000e-01

Outputting figure to mutsig2_images.part000000000157/SIRPG.4_1184_10000_0.393_0.3911_0.5311.png
                gene_name: SIRPG
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 48 percent done.
SHCBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.154516e-02	ci left: 4.610765e-01	ci right 4.807405e-01	k: 4709	n:10000
Cons ci ratio: 5.283892e-02	ci left: 3.455153e-01	ci right 3.643693e-01	k: 3549	n:10000
KS ci ratio: 6.625207e-02	ci left: 2.506326e-01	ci right 2.679078e-01	k: 2592	n:10000
SHCBP1   10000 perm   1 sec   (6847 perm/sec)   p_kst 2.592000e-01   p_cons 3.549000e-01   p_joint 4.709000e-01

Outputting figure to mutsig2_images.part000000000157/SHCBP1.3_2071_10000_0.2592_0.3549_0.4709.png
                gene_name: SHCBP1
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 50 percent done.
SHISA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.909115e-02	ci left: 8.004455e-01	ci right 8.159745e-01	k: 8083	n:10000
KS ci ratio: 4.108949e-02	ci left: 4.665692e-01	ci right 4.862446e-01	k: 4764	n:10000
SHISA3   10000 perm   1 sec   (7388 perm/sec)   p_kst 4.764000e-01   p_cons 8.083000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000157/SHISA3.3_725_10000_0.4764_0.8083_1.png
                gene_name: SHISA3
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 52 percent done.
SHKBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.993416e-02	ci left: 3.716666e-01	ci right 3.908027e-01	k: 3812	n:10000
Cons ci ratio: 2.203437e-02	ci left: 7.514032e-01	ci right 7.682452e-01	k: 7599	n:10000
KS ci ratio: 7.391724e-02	ci left: 2.113215e-01	ci right 2.276422e-01	k: 2194	n:10000
SHKBP1   10000 perm   1 sec   (6745 perm/sec)   p_kst 2.194000e-01   p_cons 7.599000e-01   p_joint 3.812000e-01

Outputting figure to mutsig2_images.part000000000157/SHKBP1.3_2196_10000_0.2194_0.7599_0.3812.png
                gene_name: SHKBP1
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 53 percent done.
SHPK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.472717e-03	ci left: 9.402467e-01	ci right 9.492921e-01	k: 9449	n:10000
KS ci ratio: 8.536721e-03	ci left: 9.505438e-01	ci right 9.587887e-01	k: 9548	n:10000
SHPK   10000 perm   1 sec   (6887 perm/sec)   p_kst 9.548000e-01   p_cons 9.449000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000157/SHPK.3_1465_10000_0.9548_0.9449_1.png
                gene_name: SHPK
               theta_stop: 0.0095 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 55 percent done.
SIAH3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.451312e-02	ci left: 4.269487e-01	ci right 4.464882e-01	k: 4367	n:10000
Cons ci ratio: 2.849757e-02	ci left: 6.447840e-01	ci right 6.635261e-01	k: 6542	n:10000
KS ci ratio: 6.794962e-02	ci left: 2.411415e-01	ci right 2.582045e-01	k: 2496	n:10000
SIAH3   10000 perm   1 sec   (7527 perm/sec)   p_kst 2.496000e-01   p_cons 6.542000e-01   p_joint 4.367000e-01

Outputting figure to mutsig2_images.part000000000157/SIAH3.3_818_10000_0.2496_0.6542_0.4367.png
                gene_name: SIAH3
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 57 percent done.
SIGLEC11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.118569e-01	ci left: 2.958536e-02	ci right 3.669001e-02	k: 330	n:10000
Cons ci ratio: 2.914909e-02	ci left: 6.344240e-01	ci right 6.532922e-01	k: 6439	n:10000
KS ci ratio: 3.442409e-01	ci left: 1.059811e-02	ci right 1.509234e-02	k: 127	n:10000
SIGLEC11   10000 perm   2 sec   (6535 perm/sec)   p_kst 1.270000e-02   p_cons 6.439000e-01   p_joint 3.300000e-02

Joint ci ratio: 8.840785e-02	ci left: 8.552962e-02	ci right 9.349019e-02	k: 1789	n:20000
Cons ci ratio: 2.073617e-02	ci left: 6.344572e-01	ci right 6.478018e-01	k: 12823	n:20000
KS ci ratio: 2.378366e-01	ci left: 1.180547e-02	ci right 1.503828e-02	k: 267	n:20000
SIGLEC11   20000 perm   3 sec   (5825 perm/sec)   p_kst 1.335000e-02   p_cons 6.411500e-01   p_joint 8.945000e-02

Joint ci ratio: 9.927831e-02	ci left: 4.694235e-02	ci right 5.187871e-02	k: 1481	n:30000
Cons ci ratio: 1.784702e-02	ci left: 6.110369e-01	ci right 6.220738e-01	k: 18497	n:30000
KS ci ratio: 1.831899e-01	ci left: 1.365498e-02	ci right 1.644009e-02	k: 450	n:30000
SIGLEC11   30000 perm   5 sec   (5570 perm/sec)   p_kst 1.500000e-02   p_cons 6.165667e-01   p_joint 4.936667e-02

Joint ci ratio: 7.173006e-02	ci left: 6.697753e-02	ci right 7.198519e-02	k: 2778	n:40000
Cons ci ratio: 1.548281e-02	ci left: 6.109624e-01	ci right 6.205208e-01	k: 24630	n:40000
KS ci ratio: 1.669198e-01	ci left: 1.246390e-02	ci right 1.475752e-02	k: 543	n:40000
SIGLEC11   40000 perm   7 sec   (5392 perm/sec)   p_kst 1.357500e-02   p_cons 6.157500e-01   p_joint 6.945000e-02

Joint ci ratio: 5.660510e-02	ci left: 8.503724e-02	ci right 9.001077e-02	k: 4375	n:50000
Cons ci ratio: 1.383691e-02	ci left: 6.118606e-01	ci right 6.204059e-01	k: 30807	n:50000
KS ci ratio: 1.500831e-01	ci left: 1.244901e-02	ci right 1.448805e-02	k: 672	n:50000
SIGLEC11   50000 perm   9 sec   (5270 perm/sec)   p_kst 1.344000e-02   p_cons 6.161400e-01   p_joint 8.750000e-02

Joint ci ratio: 5.485554e-02	ci left: 7.627774e-02	ci right 8.059647e-02	k: 4705	n:60000
Cons ci ratio: 1.261818e-02	ci left: 6.127290e-01	ci right 6.205263e-01	k: 36998	n:60000
KS ci ratio: 1.344641e-01	ci left: 1.302679e-02	ci right 1.492065e-02	k: 837	n:60000
SIGLEC11   60000 perm   12 sec   (5158 perm/sec)   p_kst 1.395000e-02   p_cons 6.166333e-01   p_joint 7.841667e-02

Joint ci ratio: 5.000649e-02	ci left: 7.867841e-02	ci right 8.272786e-02	k: 5648	n:70000
Cons ci ratio: 1.114856e-02	ci left: 6.349138e-01	ci right 6.420461e-01	k: 44694	n:70000
KS ci ratio: 1.253156e-01	ci left: 1.292115e-02	ci right 1.466235e-02	k: 964	n:70000
SIGLEC11   70000 perm   14 sec   (5057 perm/sec)   p_kst 1.377143e-02   p_cons 6.384857e-01   p_joint 8.068571e-02

Joint ci ratio: 4.833317e-02	ci left: 7.413576e-02	ci right 7.782006e-02	k: 6077	n:80000
Cons ci ratio: 1.042454e-02	ci left: 6.353224e-01	ci right 6.419925e-01	k: 51093	n:80000
KS ci ratio: 1.175933e-01	ci left: 1.289378e-02	ci right 1.451677e-02	k: 1095	n:80000
SIGLEC11   80000 perm   16 sec   (4958 perm/sec)   p_kst 1.368750e-02   p_cons 6.386625e-01   p_joint 7.596250e-02

Joint ci ratio: 4.420766e-02	ci left: 7.856554e-02	ci right 8.212823e-02	k: 7230	n:90000
Cons ci ratio: 9.800848e-03	ci left: 6.368095e-01	ci right 6.430926e-01	k: 57596	n:90000
KS ci ratio: 1.044415e-01	ci left: 1.460561e-02	ci right 1.622584e-02	k: 1386	n:90000
SIGLEC11   90000 perm   18 sec   (4866 perm/sec)   p_kst 1.540000e-02   p_cons 6.399556e-01   p_joint 8.033333e-02

Joint ci ratio: 4.313385e-02	ci left: 7.464209e-02	ci right 7.794254e-02	k: 7628	n:100000
Cons ci ratio: 9.289146e-03	ci left: 6.374067e-01	ci right 6.433652e-01	k: 64039	n:100000
KS ci ratio: 9.902031e-02	ci left: 1.466539e-02	ci right 1.620290e-02	k: 1542	n:100000
SIGLEC11   100000 perm   21 sec   (4750 perm/sec)   p_kst 1.542000e-02   p_cons 6.403900e-01   p_joint 7.628000e-02

Outputting figure to mutsig2_images.part000000000157/SIGLEC11.3_2141_100000_0.01542_0.64039_0.07628.png
                gene_name: SIGLEC11
               theta_stop: 0.099 
                    nperm: 100000 
                     p_ks: 0.015 
        ci_ks_bounds_left: 0.015 
       ci_ks_bounds_right: 0.016 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.076 
     ci_joint_bounds_left: 0.075 
    ci_joint_bounds_right: 0.078 

Current progress: 59 percent done.
SIGLEC6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.107859e-02	ci left: 9.207974e-01	ci right 9.311528e-01	k: 9261	n:10000
KS ci ratio: 2.269208e-02	ci left: 7.403801e-01	ci right 7.574747e-01	k: 7490	n:10000
SIGLEC6   10000 perm   1 sec   (6863 perm/sec)   p_kst 7.490000e-01   p_cons 9.261000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000157/SIGLEC6.3_1427_10000_0.749_0.9261_1.png
                gene_name: SIGLEC6
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 60 percent done.
SIN3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.375026e-02	ci left: 1.721207e-01	ci right 1.872663e-01	k: 1796	n:10000
Cons ci ratio: 9.001671e-02	ci left: 1.521774e-01	ci right 1.666216e-01	k: 1593	n:10000
KS ci ratio: 8.508072e-02	ci left: 1.675982e-01	ci right 1.825915e-01	k: 1750	n:10000
SIN3B   10000 perm   2 sec   (6491 perm/sec)   p_kst 1.750000e-01   p_cons 1.593000e-01   p_joint 1.796000e-01

Outputting figure to mutsig2_images.part000000000157/SIN3B.3_3569_10000_0.175_0.1593_0.1796.png
                gene_name: SIN3B
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.19 

Current progress: 62 percent done.
SIRT6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.042832e-02	ci left: 4.746606e-01	ci right 4.943484e-01	k: 4845	n:10000
Cons ci ratio: 9.568773e-02	ci left: 1.367812e-01	ci right 1.506270e-01	k: 1436	n:10000
KS ci ratio: 4.116368e-02	ci left: 4.656703e-01	ci right 4.853440e-01	k: 4755	n:10000
SIRT6   10000 perm   1 sec   (7042 perm/sec)   p_kst 4.755000e-01   p_cons 1.436000e-01   p_joint 4.845000e-01

Outputting figure to mutsig2_images.part000000000157/SIRT6.3_1100_10000_0.4755_0.1436_0.4845.png
                gene_name: SIRT6
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 64 percent done.
SH3PXD2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.552846e-02	ci left: 8.575336e-01	ci right 8.710534e-01	k: 8644	n:10000
KS ci ratio: 4.482202e-02	ci left: 4.235584e-01	ci right 4.430805e-01	k: 4333	n:10000
SH3PXD2B   10000 perm   2 sec   (6606 perm/sec)   p_kst 4.333000e-01   p_cons 8.644000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000157/SH3PXD2B.2_2788_10000_0.4333_0.8644_1.png
                gene_name: SH3PXD2B
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 66 percent done.
SH3RF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.107303e-02	ci left: 4.667689e-01	ci right 4.864447e-01	k: 4766	n:10000
Cons ci ratio: 6.126117e-02	ci left: 2.815149e-01	ci right 2.994073e-01	k: 2904	n:10000
KS ci ratio: 5.874346e-02	ci left: 2.989585e-01	ci right 3.171535e-01	k: 3080	n:10000
SH3RF3   10000 perm   1 sec   (6829 perm/sec)   p_kst 3.080000e-01   p_cons 2.904000e-01   p_joint 4.766000e-01

Outputting figure to mutsig2_images.part000000000157/SH3RF3.2_2353_10000_0.308_0.2904_0.4766.png
                gene_name: SH3RF3
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 67 percent done.
SH3TC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.187740e-02	ci left: 7.540336e-01	ci right 7.708133e-01	k: 7625	n:10000
KS ci ratio: 5.268928e-02	ci left: 3.468072e-01	ci right 3.656766e-01	k: 3562	n:10000
SH3TC2   10000 perm   2 sec   (6247 perm/sec)   p_kst 3.562000e-01   p_cons 7.625000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000157/SH3TC2.2_3935_10000_0.3562_0.7625_1.png
                gene_name: SH3TC2
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 69 percent done.
SH3YL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.163479e-02	ci left: 9.135826e-01	ci right 9.243718e-01	k: 9191	n:10000
Cons ci ratio: 7.239686e-03	ci left: 9.634151e-01	ci right 9.705095e-01	k: 9671	n:10000
KS ci ratio: 3.506102e-02	ci left: 5.456958e-01	ci right 5.652719e-01	k: 5555	n:10000
SH3YL1   10000 perm   1 sec   (7923 perm/sec)   p_kst 5.555000e-01   p_cons 9.671000e-01   p_joint 9.191000e-01

Outputting figure to mutsig2_images.part000000000157/SH3YL1.2_1069_10000_0.5555_0.9671_0.9191.png
                gene_name: SH3YL1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 71 percent done.
SHC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.993693e-02	ci left: 7.864452e-01	ci right 8.023829e-01	k: 7945	n:10000
KS ci ratio: 1.323674e-02	ci left: 8.915942e-01	ci right 9.035731e-01	k: 8977	n:10000
SHC1   10000 perm   1 sec   (7360 perm/sec)   p_kst 8.977000e-01   p_cons 7.945000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000157/SHC1.2_1803_10000_0.8977_0.7945_1.png
                gene_name: SHC1
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
SHC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.697687e-03	ci left: 9.376532e-01	ci right 9.468871e-01	k: 9424	n:10000
KS ci ratio: 3.910019e-02	ci left: 4.913511e-01	ci right 5.110482e-01	k: 5012	n:10000
SHC3   10000 perm   1 sec   (7052 perm/sec)   p_kst 5.012000e-01   p_cons 9.424000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000157/SHC3.2_1833_10000_0.5012_0.9424_1.png
                gene_name: SHC3
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 74 percent done.
SHH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.051078e-01	ci left: 1.156461e-01	ci right 1.285750e-01	k: 1220	n:10000
Cons ci ratio: 1.055514e-01	ci left: 1.147668e-01	ci right 1.276548e-01	k: 1211	n:10000
KS ci ratio: 4.424278e-02	ci left: 4.299405e-01	ci right 4.494947e-01	k: 4397	n:10000
SHH   10000 perm   1 sec   (7382 perm/sec)   p_kst 4.397000e-01   p_cons 1.211000e-01   p_joint 1.220000e-01

Joint ci ratio: 7.507870e-02	ci left: 1.154284e-01	ci right 1.244824e-01	k: 2398	n:20000
Cons ci ratio: 7.545444e-02	ci left: 1.143957e-01	ci right 1.234154e-01	k: 2377	n:20000
KS ci ratio: 3.167418e-02	ci left: 4.267668e-01	ci right 4.405525e-01	k: 8673	n:20000
SHH   20000 perm   3 sec   (6523 perm/sec)   p_kst 4.336500e-01   p_cons 1.188500e-01   p_joint 1.199000e-01

Outputting figure to mutsig2_images.part000000000157/SHH.2_1401_20000_0.43365_0.11885_0.1199.png
                gene_name: SHH
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 76 percent done.
SHISA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.184997e-02	ci left: 3.541627e-01	ci right 3.731168e-01	k: 3636	n:10000
KS ci ratio: 4.274819e-02	ci left: 4.469008e-01	ci right 4.665244e-01	k: 4567	n:10000
SHISA2   10000 perm   1 sec   (7664 perm/sec)   p_kst 4.567000e-01   p_cons 3.636000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000157/SHISA2.2_896_10000_0.4567_0.3636_1.png
                gene_name: SHISA2
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
SHQ1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.947173e-02	ci left: 3.760446e-01	ci right 3.952221e-01	k: 3856	n:10000
KS ci ratio: 1.251182e-02	ci left: 9.017548e-01	ci right 9.132066e-01	k: 9076	n:10000
SHQ1   10000 perm   1 sec   (7164 perm/sec)   p_kst 9.076000e-01   p_cons 3.856000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000157/SHQ1.2_1778_10000_0.9076_0.3856_1.png
                gene_name: SHQ1
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
SIAE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.013812e-02	ci left: 4.782576e-01	ci right 4.979493e-01	k: 4881	n:10000
KS ci ratio: 4.132906e-02	ci left: 4.636729e-01	ci right 4.833426e-01	k: 4735	n:10000
SIAE   10000 perm   1 sec   (7534 perm/sec)   p_kst 4.735000e-01   p_cons 4.881000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000157/SIAE.2_1612_10000_0.4735_0.4881_1.png
                gene_name: SIAE
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
SIGIRR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.901722e-02	ci left: 8.016636e-01	ci right 8.171557e-01	k: 8095	n:10000
KS ci ratio: 1.137492e-02	ci left: 9.169823e-01	ci right 9.275701e-01	k: 9224	n:10000
SIGIRR   10000 perm   1 sec   (7713 perm/sec)   p_kst 9.224000e-01   p_cons 8.095000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000157/SIGIRR.2_1269_10000_0.9224_0.8095_1.png
                gene_name: SIGIRR
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
SIGLEC14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.437765e-02	ci left: 5.554160e-01	ci right 5.749460e-01	k: 5652	n:10000
Cons ci ratio: 2.248696e-02	ci left: 7.438177e-01	ci right 7.608351e-01	k: 7524	n:10000
KS ci ratio: 9.062615e-02	ci left: 1.504109e-01	ci right 1.647892e-01	k: 1575	n:10000
SIGLEC14   10000 perm   1 sec   (7457 perm/sec)   p_kst 1.575000e-01   p_cons 7.524000e-01   p_joint 5.652000e-01

Outputting figure to mutsig2_images.part000000000157/SIGLEC14.2_1219_10000_0.1575_0.7524_0.5652.png
                gene_name: SIGLEC14
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.57 

Current progress: 84 percent done.
SIGLEC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.441962e-02	ci left: 5.548147e-01	ci right 5.743477e-01	k: 5646	n:10000
Cons ci ratio: 4.689887e-02	ci left: 4.015330e-01	ci right 4.209187e-01	k: 4112	n:10000
KS ci ratio: 6.045373e-02	ci left: 2.869643e-01	ci right 3.049547e-01	k: 2959	n:10000
SIGLEC5   10000 perm   1 sec   (7273 perm/sec)   p_kst 2.959000e-01   p_cons 4.112000e-01   p_joint 5.646000e-01

Outputting figure to mutsig2_images.part000000000157/SIGLEC5.2_1692_10000_0.2959_0.4112_0.5646.png
                gene_name: SIGLEC5
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 86 percent done.
SIGLEC7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.710244e-02	ci left: 5.175581e-01	ci right 5.372259e-01	k: 5274	n:10000
KS ci ratio: 2.923175e-02	ci left: 6.331167e-01	ci right 6.520002e-01	k: 6426	n:10000
SIGLEC7   10000 perm   1 sec   (7667 perm/sec)   p_kst 6.426000e-01   p_cons 5.274000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000157/SIGLEC7.2_1432_10000_0.6426_0.5274_1.png
                gene_name: SIGLEC7
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
SIK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.810189e-02	ci left: 6.511231e-01	ci right 6.697834e-01	k: 6605	n:10000
KS ci ratio: 1.094056e-02	ci left: 9.225516e-01	ci right 9.327976e-01	k: 9278	n:10000
SIK1   10000 perm   1 sec   (6871 perm/sec)   p_kst 9.278000e-01   p_cons 6.605000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000157/SIK1.2_2404_10000_0.9278_0.6605_1.png
                gene_name: SIK1
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
SIM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.886299e-02	ci left: 8.042017e-01	ci right 8.196161e-01	k: 8120	n:10000
Cons ci ratio: 5.635179e-02	ci left: 3.168145e-01	ci right 3.352869e-01	k: 3260	n:10000
KS ci ratio: 2.732256e-02	ci left: 6.637061e-01	ci right 6.821931e-01	k: 6730	n:10000
SIM2   10000 perm   1 sec   (6965 perm/sec)   p_kst 6.730000e-01   p_cons 3.260000e-01   p_joint 8.120000e-01

Outputting figure to mutsig2_images.part000000000157/SIM2.2_2185_10000_0.673_0.326_0.812.png
                gene_name: SIM2
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 91 percent done.
SIRPB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.132723e-02	ci left: 9.176007e-01	ci right 9.281513e-01	k: 9230	n:10000
KS ci ratio: 7.494614e-02	ci left: 2.066861e-01	ci right 2.228804e-01	k: 2147	n:10000
SIRPB2   10000 perm   1 sec   (7878 perm/sec)   p_kst 2.147000e-01   p_cons 9.230000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000157/SIRPB2.2_1049_10000_0.2147_0.923_1.png
                gene_name: SIRPB2
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
SIRT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.728861e-02	ci left: 1.966317e-01	ci right 2.125408e-01	k: 2045	n:10000
Cons ci ratio: 4.058238e-02	ci left: 4.727624e-01	ci right 4.924478e-01	k: 4826	n:10000
KS ci ratio: 9.323853e-02	ci left: 1.431522e-01	ci right 1.572522e-01	k: 1501	n:10000
SIRT2   10000 perm   1 sec   (7451 perm/sec)   p_kst 1.501000e-01   p_cons 4.826000e-01   p_joint 2.045000e-01

Outputting figure to mutsig2_images.part000000000157/SIRT2.2_1234_10000_0.1501_0.4826_0.2045.png
                gene_name: SIRT2
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 95 percent done.
SIRT7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.771208e-02	ci left: 3.932662e-01	ci right 4.125904e-01	k: 4029	n:10000
Cons ci ratio: 9.215805e-02	ci left: 1.460943e-01	ci right 1.603084e-01	k: 1531	n:10000
KS ci ratio: 5.509389e-02	ci left: 3.267412e-01	ci right 3.453544e-01	k: 3360	n:10000
SIRT7   10000 perm   1 sec   (6860 perm/sec)   p_kst 3.360000e-01   p_cons 1.531000e-01   p_joint 4.029000e-01

Outputting figure to mutsig2_images.part000000000157/SIRT7.2_1243_10000_0.336_0.1531_0.4029.png
                gene_name: SIRT7
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 97 percent done.
SIX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.416165e-02	ci left: 8.781755e-01	ci right 8.907995e-01	k: 8846	n:10000
Cons ci ratio: 2.345856e-02	ci left: 7.275456e-01	ci right 7.449166e-01	k: 7363	n:10000
KS ci ratio: 3.066638e-02	ci left: 6.107041e-01	ci right 6.298258e-01	k: 6203	n:10000
SIX1   10000 perm   1 sec   (7831 perm/sec)   p_kst 6.203000e-01   p_cons 7.363000e-01   p_joint 8.846000e-01

Outputting figure to mutsig2_images.part000000000157/SIX1.2_863_10000_0.6203_0.7363_0.8846.png
                gene_name: SIX1
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 98 percent done.
SIX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.767870e-02	ci left: 2.426241e-01	ci right 2.597210e-01	k: 2511	n:10000
Cons ci ratio: 1.546038e-01	ci left: 5.571306e-02	ci right 6.514503e-02	k: 603	n:10000
KS ci ratio: 1.043788e-01	ci left: 1.171118e-01	ci right 1.301083e-01	k: 1235	n:10000
SIX2   10000 perm   1 sec   (7795 perm/sec)   p_kst 1.235000e-01   p_cons 6.030000e-02   p_joint 2.511000e-01

Joint ci ratio: 6.485446e-02	ci left: 1.494178e-01	ci right 1.594829e-01	k: 3088	n:20000
Cons ci ratio: 1.092757e-01	ci left: 5.713750e-02	ci right 6.379100e-02	k: 1208	n:20000
KS ci ratio: 7.527493e-02	ci left: 1.148875e-01	ci right 1.239235e-01	k: 2387	n:20000
SIX2   20000 perm   3 sec   (6833 perm/sec)   p_kst 1.193500e-01   p_cons 6.040000e-02   p_joint 1.544000e-01

Joint ci ratio: 5.859932e-02	ci left: 1.259833e-01	ci right 1.336219e-01	k: 3893	n:30000
Cons ci ratio: 8.976508e-02	ci left: 5.707763e-02	ci right 6.247468e-02	k: 1792	n:30000
KS ci ratio: 6.167737e-02	ci left: 1.149947e-01	ci right 1.223460e-01	k: 3559	n:30000
SIX2   30000 perm   5 sec   (6461 perm/sec)   p_kst 1.186333e-01   p_cons 5.973333e-02   p_joint 1.297667e-01

Outputting figure to mutsig2_images.part000000000157/SIX2.2_884_30000_0.11863_0.059733_0.12977.png
                gene_name: SIX2
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.060 
      ci_cons_bounds_left: 0.057 
     ci_cons_bounds_right: 0.062 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000157
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 157 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1555>
Subject: Job 8004542: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1555>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000158> was used as the working directory.
Started at Sun Nov 11 15:17:28 2012
Results reported at Sun Nov 11 15:42:21 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000158.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000158.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 158  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000158.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1737.48 sec.
    Max Memory :      4796 MB
    Max Swap   :      7069 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
158
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 158
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 158: processing genes 14205 - 14294
Calculating significance of each gene.
Using projection method.
14205	SIX3	2.107107e-01
14206	SIX4	3.368373e-01
14207	SIX5	1
14208	SIX6	1
14209	SKA1	1.077830e-01
14210	SKA2	4.684145e-01
14211	SKA3	2.812602e-01
14212	SKAP1	2.280739e-01
14213	SKAP2	2.738106e-01
14214	SKI	1
14215	SKIL	9.191389e-01
14216	SKIV2L	9.899875e-01
14217	SKIV2L2	8.973237e-01
14218	SKP1	4.885121e-01
14219	SKP2	6.108646e-01
14220	SLA	2.164657e-01
14221	SLA2	4.627642e-01
14222	SLAIN1	6.757106e-01
14223	SLAIN2	4.682733e-01
14224	SLAMF1	1.826174e-01
14225	SLAMF6	1
14226	SLAMF7	7.049135e-01
14227	SLAMF8	5.593202e-01
14228	SLAMF9	1.443617e-01
14229	SLBP	1
14230	SLC10A1	1.645629e-01
14231	SLC10A2	1
14232	SLC10A3	1
14233	SLC10A4	1
14234	SLC10A5	1
14235	SLC10A6	1
14236	SLC10A7	1.904348e-01
14237	SLC11A1	8.848379e-01
14238	SLC11A2	1
14239	SLC12A1	7.917975e-01
14240	SLC12A2	1
14241	SLC12A3	1
14242	SLC12A4	1
14243	SLC12A5	9.772487e-01
14244	SLC12A6	2.021492e-01
14245	SLC12A7	5.968120e-01
14246	SLC12A8	7.149125e-01
14247	SLC12A9	1
14248	SLC13A1	3.319742e-06
14249	SLC13A2	7.913771e-01
14250	SLC13A3	1
14251	SLC13A4	8.754286e-01
14252	SLC13A5	1
14253	SLC14A1	1.335338e-01
14254	SLC14A2	1
14255	SLC15A1	6.958591e-01
14256	SLC15A2	3.108558e-01
14257	SLC15A3	5.652330e-01
14258	SLC15A4	4.596632e-02
14259	SLC16A1	7.206482e-01
14260	SLC16A10	7.023555e-01
14261	SLC16A11	3.748325e-01
14262	SLC16A12	1
14263	SLC16A13	1
14264	SLC16A14	5.985651e-01
14265	SLC16A2	8.239928e-01
14266	SLC16A3	1
14267	SLC16A4	6.296330e-01
14268	SLC16A5	1
14269	SLC16A6	1
14270	SLC16A7	1
14271	SLC16A8	1
14272	SLC16A9	4.058745e-01
14273	SLC17A1	2.545306e-02
14274	SLC17A2	2.707041e-01
14275	SLC17A3	1.549079e-01
14276	SLC17A4	1
14277	SLC17A5	1
14278	SLC17A6	3.373596e-01
14279	SLC17A7	1.597920e-01
14280	SLC17A8	2.880218e-05
14281	SLC17A9	1
14282	SLC18A1	1.289973e-01
14283	SLC18A2	1
14284	SLC18A3	9.035533e-04
14285	SLC19A1	1
14286	SLC19A2	5.062357e-01
14287	SLC19A3	1
14288	SLC1A1	5.751078e-01
14289	SLC1A2	5.041087e-01
14290	SLC1A3	5.763044e-01
14291	SLC1A4	4.825812e-01
14292	SLC1A5	1
14293	SLC1A6	3.887169e-01
14294	SLC1A7	1
Done

Running MutSig 2:
Scatter job 158: processing genes 14205 - 14294
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SLC17A8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.864157e-02	ci left: 4.972503e-01	ci right 5.169456e-01	k: 5071	n:10000
KS ci ratio: 2.884472e-02	ci left: 6.392513e-01	ci right 6.580620e-01	k: 6487	n:10000
SLC17A8   10000 perm   2 sec   (4082 perm/sec)   p_kst 6.487000e-01   p_cons 5.071000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000158/SLC17A8.14_1818_10000_0.6487_0.5071_1.png
                gene_name: SLC17A8
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 2 percent done.
SLC13A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.010034e-01	ci left: 1.242496e-01	ci right 1.375662e-01	k: 1308	n:10000
Cons ci ratio: 3.865703e-02	ci left: 4.970503e-01	ci right 5.167457e-01	k: 5069	n:10000
KS ci ratio: 1.453474e-01	ci left: 6.285242e-02	ci right 7.280114e-02	k: 677	n:10000
SLC13A1   10000 perm   2 sec   (4394 perm/sec)   p_kst 6.770000e-02   p_cons 5.069000e-01   p_joint 1.308000e-01

Joint ci ratio: 7.183240e-02	ci left: 1.249251e-01	ci right 1.342829e-01	k: 2591	n:20000
Cons ci ratio: 2.721662e-02	ci left: 5.021457e-01	ci right 5.160516e-01	k: 10182	n:20000
KS ci ratio: 1.029005e-01	ci left: 6.415862e-02	ci right 7.116771e-02	k: 1352	n:20000
SLC13A1   20000 perm   5 sec   (4021 perm/sec)   p_kst 6.760000e-02   p_cons 5.091000e-01   p_joint 1.295500e-01

Joint ci ratio: 6.154993e-02	ci left: 1.154222e-01	ci right 1.227851e-01	k: 3572	n:30000
Cons ci ratio: 2.200306e-02	ci left: 5.083932e-01	ci right 5.197374e-01	k: 15422	n:30000
KS ci ratio: 8.490812e-02	ci left: 6.350998e-02	ci right 6.917435e-02	k: 1989	n:30000
SLC13A1   30000 perm   8 sec   (3864 perm/sec)   p_kst 6.630000e-02   p_cons 5.140667e-01   p_joint 1.190667e-01

Outputting figure to mutsig2_images.part000000000158/SLC13A1.12_1848_30000_0.0663_0.51407_0.11907.png
                gene_name: SLC13A1
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.066 
        ci_ks_bounds_left: 0.064 
       ci_ks_bounds_right: 0.069 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 4 percent done.
SLC12A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.145532e-01	ci left: 2.882687e-02	ci right 3.584904e-02	k: 322	n:10000
Cons ci ratio: 2.058238e-01	ci left: 3.138896e-02	ci right 3.868516e-02	k: 349	n:10000
KS ci ratio: 1.514271e-01	ci left: 5.802650e-02	ci right 6.763012e-02	k: 627	n:10000
SLC12A1   10000 perm   2 sec   (4327 perm/sec)   p_kst 6.270000e-02   p_cons 3.490000e-02   p_joint 3.220000e-02

Joint ci ratio: 9.988490e-02	ci left: 6.791774e-02	ci right 7.510743e-02	k: 1429	n:20000
Cons ci ratio: 1.421072e-01	ci left: 3.404014e-02	ci right 3.929568e-02	k: 732	n:20000
KS ci ratio: 1.071685e-01	ci left: 5.933027e-02	ci right 6.609755e-02	k: 1253	n:20000
SLC12A1   20000 perm   5 sec   (3923 perm/sec)   p_kst 6.265000e-02   p_cons 3.660000e-02   p_joint 7.145000e-02

Joint ci ratio: 9.286185e-02	ci left: 5.345727e-02	ci right 5.869579e-02	k: 1681	n:30000
Cons ci ratio: 1.173388e-01	ci left: 3.375839e-02	ci right 3.799877e-02	k: 1075	n:30000
KS ci ratio: 8.757789e-02	ci left: 5.985196e-02	ci right 6.536645e-02	k: 1877	n:30000
SLC12A1   30000 perm   8 sec   (3767 perm/sec)   p_kst 6.256667e-02   p_cons 3.583333e-02   p_joint 5.603333e-02

Joint ci ratio: 9.047581e-02	ci left: 4.279337e-02	ci right 4.687304e-02	k: 1792	n:40000
Cons ci ratio: 9.240792e-02	ci left: 4.105722e-02	ci right 4.505946e-02	k: 1721	n:40000
KS ci ratio: 7.515887e-02	ci left: 6.127683e-02	ci right 6.608676e-02	k: 2546	n:40000
SLC12A1   40000 perm   11 sec   (3654 perm/sec)   p_kst 6.365000e-02   p_cons 4.302500e-02   p_joint 4.480000e-02

Outputting figure to mutsig2_images.part000000000158/SLC12A1.9_3504_40000_0.06365_0.043025_0.0448.png
                gene_name: SLC12A1
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.064 
        ci_ks_bounds_left: 0.061 
       ci_ks_bounds_right: 0.066 
                   p_cons: 0.043 
      ci_cons_bounds_left: 0.041 
     ci_cons_bounds_right: 0.045 
                  p_joint: 0.045 
     ci_joint_bounds_left: 0.043 
    ci_joint_bounds_right: 0.047 

Current progress: 5 percent done.
SLC17A6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.953336e-02	ci left: 7.931392e-01	ci right 8.088851e-01	k: 8011	n:10000
Cons ci ratio: 2.405090e-02	ci left: 7.176482e-01	ci right 7.352197e-01	k: 7265	n:10000
KS ci ratio: 4.655201e-02	ci left: 4.051195e-01	ci right 4.245302e-01	k: 4148	n:10000
SLC17A6   10000 perm   2 sec   (4437 perm/sec)   p_kst 4.148000e-01   p_cons 7.265000e-01   p_joint 8.011000e-01

Outputting figure to mutsig2_images.part000000000158/SLC17A6.8_1797_10000_0.4148_0.7265_0.8011.png
                gene_name: SLC17A6
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 7 percent done.
SLC18A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.346716e-02	ci left: 2.133931e-01	ci right 2.297694e-01	k: 2215	n:10000
Cons ci ratio: 4.000985e-02	ci left: 4.798565e-01	ci right 4.995495e-01	k: 4897	n:10000
KS ci ratio: 1.244153e-01	ci left: 8.465526e-02	ci right 9.598471e-02	k: 902	n:10000
SLC18A3   10000 perm   2 sec   (4891 perm/sec)   p_kst 9.020000e-02   p_cons 4.897000e-01   p_joint 2.215000e-01

Joint ci ratio: 5.390757e-02	ci left: 2.034321e-01	ci right 2.147526e-01	k: 4181	n:20000
Cons ci ratio: 2.870694e-02	ci left: 4.755027e-01	ci right 4.894024e-01	k: 9649	n:20000
KS ci ratio: 8.827251e-02	ci left: 8.577461e-02	ci right 9.374513e-02	k: 1794	n:20000
SLC18A3   20000 perm   5 sec   (4382 perm/sec)   p_kst 8.970000e-02   p_cons 4.824500e-01   p_joint 2.090500e-01

Outputting figure to mutsig2_images.part000000000158/SLC18A3.8_1603_20000_0.0897_0.48245_0.20905.png
                gene_name: SLC18A3
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.090 
        ci_ks_bounds_left: 0.086 
       ci_ks_bounds_right: 0.094 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 9 percent done.
SLC12A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.913424e-02	ci left: 7.997350e-01	ci right 8.152855e-01	k: 8076	n:10000
Cons ci ratio: 4.827181e-02	ci left: 3.876902e-01	ci right 4.069696e-01	k: 3973	n:10000
KS ci ratio: 3.566848e-02	ci left: 5.371811e-01	ci right 5.567915e-01	k: 5470	n:10000
SLC12A3   10000 perm   2 sec   (4262 perm/sec)   p_kst 5.470000e-01   p_cons 3.973000e-01   p_joint 8.076000e-01

Outputting figure to mutsig2_images.part000000000158/SLC12A3.7_3197_10000_0.547_0.3973_0.8076.png
                gene_name: SLC12A3
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 11 percent done.
SLC12A6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.066559e-01	ci left: 1.126178e-01	ci right 1.254051e-01	k: 1189	n:10000
Cons ci ratio: 1.865273e-02	ci left: 8.076544e-01	ci right 8.229615e-01	k: 8154	n:10000
KS ci ratio: 1.642256e-01	ci left: 4.945836e-02	ci right 5.840374e-02	k: 538	n:10000
SLC12A6   10000 perm   2 sec   (4530 perm/sec)   p_kst 5.380000e-02   p_cons 8.154000e-01   p_joint 1.189000e-01

Joint ci ratio: 7.854219e-02	ci left: 1.063834e-01	ci right 1.151301e-01	k: 2214	n:20000
Cons ci ratio: 1.315622e-02	ci left: 8.107107e-01	ci right 8.214972e-01	k: 16323	n:20000
KS ci ratio: 1.150598e-01	ci left: 5.168573e-02	ci right 5.804447e-02	k: 1096	n:20000
SLC12A6   20000 perm   5 sec   (4033 perm/sec)   p_kst 5.480000e-02   p_cons 8.161500e-01   p_joint 1.107000e-01

Joint ci ratio: 5.824745e-02	ci left: 1.273329e-01	ci right 1.350054e-01	k: 3934	n:30000
Cons ci ratio: 1.097211e-02	ci left: 8.052115e-01	ci right 8.141284e-01	k: 24291	n:30000
KS ci ratio: 9.262872e-02	ci left: 5.371809e-02	ci right 5.896824e-02	k: 1689	n:30000
SLC12A6   30000 perm   8 sec   (3851 perm/sec)   p_kst 5.630000e-02   p_cons 8.097000e-01   p_joint 1.311333e-01

Outputting figure to mutsig2_images.part000000000158/SLC12A6.7_3675_30000_0.0563_0.8097_0.13113.png
                gene_name: SLC12A6
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.056 
        ci_ks_bounds_left: 0.054 
       ci_ks_bounds_right: 0.059 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 13 percent done.
SLC12A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.631636e-02	ci left: 6.801255e-01	ci right 6.983641e-01	k: 6893	n:10000
KS ci ratio: 1.386189e-02	ci left: 8.825771e-01	ci right 8.949954e-01	k: 8889	n:10000
SLC12A5   10000 perm   2 sec   (4446 perm/sec)   p_kst 8.889000e-01   p_cons 6.893000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000158/SLC12A5.6_3580_10000_0.8889_0.6893_1.png
                gene_name: SLC12A5
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 15 percent done.
SLC12A7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.139578e-01	ci left: 9.973948e-02	ci right 1.118912e-01	k: 1057	n:10000
Cons ci ratio: 1.370683e-01	ci left: 7.039603e-02	ci right 8.085279e-02	k: 755	n:10000
KS ci ratio: 4.280852e-02	ci left: 4.462022e-01	ci right 4.658234e-01	k: 4560	n:10000
SLC12A7   10000 perm   2 sec   (4805 perm/sec)   p_kst 4.560000e-01   p_cons 7.550000e-02   p_joint 1.057000e-01

Joint ci ratio: 5.629992e-02	ci left: 1.895781e-01	ci right 2.006107e-01	k: 3901	n:20000
Cons ci ratio: 9.162077e-02	ci left: 7.999553e-02	ci right 8.772596e-02	k: 1676	n:20000
KS ci ratio: 3.010247e-02	ci left: 4.518755e-01	ci right 4.657365e-01	k: 9176	n:20000
SLC12A7   20000 perm   5 sec   (4140 perm/sec)   p_kst 4.588000e-01   p_cons 8.380000e-02   p_joint 1.950500e-01

Outputting figure to mutsig2_images.part000000000158/SLC12A7.5_3348_20000_0.4588_0.0838_0.19505.png
                gene_name: SLC12A7
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.084 
      ci_cons_bounds_left: 0.080 
     ci_cons_bounds_right: 0.088 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 16 percent done.
SLC17A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.339492e-02	ci left: 5.696526e-01	ci right 5.891012e-01	k: 5794	n:10000
Cons ci ratio: 6.523286e-02	ci left: 2.565673e-01	ci right 2.739696e-01	k: 2652	n:10000
KS ci ratio: 3.556785e-02	ci left: 5.385833e-01	ci right 5.581885e-01	k: 5484	n:10000
SLC17A1   10000 perm   2 sec   (4914 perm/sec)   p_kst 5.484000e-01   p_cons 2.652000e-01   p_joint 5.794000e-01

Outputting figure to mutsig2_images.part000000000158/SLC17A1.5_1448_10000_0.5484_0.2652_0.5794.png
                gene_name: SLC17A1
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 18 percent done.
SIX4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.339508e-03	ci left: 9.713246e-01	ci right 9.775949e-01	k: 9746	n:10000
KS ci ratio: 2.798921e-02	ci left: 6.529346e-01	ci right 6.715708e-01	k: 6623	n:10000
SIX4   10000 perm   2 sec   (5161 perm/sec)   p_kst 6.623000e-01   p_cons 9.746000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000158/SIX4.4_2358_10000_0.6623_0.9746_1.png
                gene_name: SIX4
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 20 percent done.
SLC12A9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.133735e-02	ci left: 4.635730e-01	ci right 4.832425e-01	k: 4734	n:10000
Cons ci ratio: 5.834631e-02	ci left: 3.018342e-01	ci right 3.200760e-01	k: 3109	n:10000
KS ci ratio: 5.994992e-02	ci left: 2.904329e-01	ci right 3.084840e-01	k: 2994	n:10000
SLC12A9   10000 perm   2 sec   (4775 perm/sec)   p_kst 2.994000e-01   p_cons 3.109000e-01   p_joint 4.734000e-01

Outputting figure to mutsig2_images.part000000000158/SLC12A9.4_2797_10000_0.2994_0.3109_0.4734.png
                gene_name: SLC12A9
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 22 percent done.
SLC14A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.039986e-02	ci left: 7.787410e-01	ci right 7.948916e-01	k: 7869	n:10000
KS ci ratio: 1.997354e-02	ci left: 7.858368e-01	ci right 8.017917e-01	k: 7939	n:10000
SLC14A1   10000 perm   2 sec   (5597 perm/sec)   p_kst 7.939000e-01   p_cons 7.869000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000158/SLC14A1.4_1374_10000_0.7939_0.7869_1.png
                gene_name: SLC14A1
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 24 percent done.
SLC14A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.792416e-02	ci left: 8.195432e-01	ci right 8.344658e-01	k: 8271	n:10000
Cons ci ratio: 5.388181e-02	ci left: 3.366725e-01	ci right 3.554172e-01	k: 3460	n:10000
KS ci ratio: 3.115002e-02	ci left: 6.032715e-01	ci right 6.224627e-01	k: 6129	n:10000
SLC14A2   10000 perm   2 sec   (4894 perm/sec)   p_kst 6.129000e-01   p_cons 3.460000e-01   p_joint 8.271000e-01

Outputting figure to mutsig2_images.part000000000158/SLC14A2.4_2839_10000_0.6129_0.346_0.8271.png
                gene_name: SLC14A2
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 25 percent done.
SLC15A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.996107e-02	ci left: 6.216565e-01	ci right 6.406671e-01	k: 6312	n:10000
Cons ci ratio: 2.736601e-02	ci left: 6.630012e-01	ci right 6.814983e-01	k: 6723	n:10000
KS ci ratio: 4.309433e-02	ci left: 4.429091e-01	ci right 4.625185e-01	k: 4527	n:10000
SLC15A2   10000 perm   2 sec   (5195 perm/sec)   p_kst 4.527000e-01   p_cons 6.723000e-01   p_joint 6.312000e-01

Outputting figure to mutsig2_images.part000000000158/SLC15A2.4_2278_10000_0.4527_0.6723_0.6312.png
                gene_name: SLC15A2
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 27 percent done.
SLC15A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.154889e-02	ci left: 3.568471e-01	ci right 3.758308e-01	k: 3663	n:10000
Cons ci ratio: 8.205735e-03	ci left: 9.539874e-01	ci right 9.619430e-01	k: 9581	n:10000
KS ci ratio: 6.309380e-02	ci left: 2.696308e-01	ci right 2.872985e-01	k: 2784	n:10000
SLC15A4   10000 perm   2 sec   (5723 perm/sec)   p_kst 2.784000e-01   p_cons 9.581000e-01   p_joint 3.663000e-01

Outputting figure to mutsig2_images.part000000000158/SLC15A4.4_1766_10000_0.2784_0.9581_0.3663.png
                gene_name: SLC15A4
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 29 percent done.
SLC17A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.767639e-03	ci left: 9.583798e-01	ci right 9.659480e-01	k: 9623	n:10000
KS ci ratio: 2.234215e-02	ci left: 7.462447e-01	ci right 7.632067e-01	k: 7548	n:10000
SLC17A3   10000 perm   2 sec   (5601 perm/sec)   p_kst 7.548000e-01   p_cons 9.623000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000158/SLC17A3.4_1541_10000_0.7548_0.9623_1.png
                gene_name: SLC17A3
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 31 percent done.
SLC17A7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.398073e-02	ci left: 5.611297e-01	ci right 5.806290e-01	k: 5709	n:10000
KS ci ratio: 1.334449e-02	ci left: 8.900563e-01	ci right 9.021119e-01	k: 8962	n:10000
SLC17A7   10000 perm   2 sec   (5457 perm/sec)   p_kst 8.962000e-01   p_cons 5.709000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000158/SLC17A7.4_1731_10000_0.8962_0.5709_1.png
                gene_name: SLC17A7
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 33 percent done.
SLC18A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.454932e-02	ci left: 4.265498e-01	ci right 4.460873e-01	k: 4363	n:10000
Cons ci ratio: 5.262044e-02	ci left: 3.474035e-01	ci right 3.662799e-01	k: 3568	n:10000
KS ci ratio: 6.943212e-02	ci left: 2.332365e-01	ci right 2.501142e-01	k: 2416	n:10000
SLC18A1   10000 perm   2 sec   (5258 perm/sec)   p_kst 2.416000e-01   p_cons 3.568000e-01   p_joint 4.363000e-01

Outputting figure to mutsig2_images.part000000000158/SLC18A1.4_1638_10000_0.2416_0.3568_0.4363.png
                gene_name: SLC18A1
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 35 percent done.
SLC1A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.397822e-02	ci left: 1.713341e-01	ci right 1.864535e-01	k: 1788	n:10000
Cons ci ratio: 2.366999e-02	ci left: 7.240102e-01	ci right 7.414540e-01	k: 7328	n:10000
KS ci ratio: 9.518550e-02	ci left: 1.380551e-01	ci right 1.519524e-01	k: 1449	n:10000
SLC1A2   10000 perm   2 sec   (5556 perm/sec)   p_kst 1.449000e-01   p_cons 7.328000e-01   p_joint 1.788000e-01

Outputting figure to mutsig2_images.part000000000158/SLC1A2.4_1769_10000_0.1449_0.7328_0.1788.png
                gene_name: SLC1A2
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.19 

Current progress: 36 percent done.
SKAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.972766e-03	ci left: 9.742942e-01	ci right 9.802233e-01	k: 9774	n:10000
KS ci ratio: 1.412003e-02	ci left: 8.787895e-01	ci right 8.913852e-01	k: 8852	n:10000
SKAP1   10000 perm   2 sec   (6630 perm/sec)   p_kst 8.852000e-01   p_cons 9.774000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000158/SKAP1.3_1128_10000_0.8852_0.9774_1.png
                gene_name: SKAP1
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 38 percent done.
SKIV2L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.405052e-02	ci left: 8.798130e-01	ci right 8.923611e-01	k: 8862	n:10000
KS ci ratio: 1.914040e-02	ci left: 7.996335e-01	ci right 8.151870e-01	k: 8075	n:10000
SKIV2L   10000 perm   2 sec   (4507 perm/sec)   p_kst 8.075000e-01   p_cons 8.862000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000158/SKIV2L.3_3853_10000_0.8075_0.8862_1.png
                gene_name: SKIV2L
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 40 percent done.
SLAMF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.576124e-03	ci left: 9.501268e-01	ci right 9.584059e-01	k: 9544	n:10000
Cons ci ratio: 2.319896e-02	ci left: 7.318901e-01	ci right 7.491696e-01	k: 7406	n:10000
KS ci ratio: 3.374555e-02	ci left: 5.645385e-01	ci right 5.840182e-01	k: 5743	n:10000
SLAMF1   10000 perm   2 sec   (6068 perm/sec)   p_kst 5.743000e-01   p_cons 7.406000e-01   p_joint 9.544000e-01

Outputting figure to mutsig2_images.part000000000158/SLAMF1.3_1036_10000_0.5743_0.7406_0.9544.png
                gene_name: SLAMF1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 42 percent done.
SLAMF9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.682149e-02	ci left: 4.023300e-01	ci right 4.217213e-01	k: 4120	n:10000
Cons ci ratio: 1.319447e-01	ci left: 7.572512e-02	ci right 8.652038e-02	k: 810	n:10000
KS ci ratio: 3.223032e-02	ci left: 5.869078e-01	ci right 6.062359e-01	k: 5966	n:10000
SLAMF9   10000 perm   2 sec   (6424 perm/sec)   p_kst 5.966000e-01   p_cons 8.100000e-02   p_joint 4.120000e-01

Joint ci ratio: 5.218420e-02	ci left: 2.142750e-01	ci right 2.258065e-01	k: 4400	n:20000
Cons ci ratio: 9.415636e-02	ci left: 7.598287e-02	ci right 8.353984e-02	k: 1594	n:20000
KS ci ratio: 2.220663e-02	ci left: 6.022468e-01	ci right 6.158214e-01	k: 12181	n:20000
SLAMF9   20000 perm   4 sec   (5589 perm/sec)   p_kst 6.090500e-01   p_cons 7.970000e-02   p_joint 2.200000e-01

Outputting figure to mutsig2_images.part000000000158/SLAMF9.3_886_20000_0.60905_0.0797_0.22.png
                gene_name: SLAMF9
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.080 
      ci_cons_bounds_left: 0.076 
     ci_cons_bounds_right: 0.084 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 44 percent done.
SLC10A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.142066e-02	ci left: 2.231634e-01	ci right 2.397933e-01	k: 2314	n:10000
Cons ci ratio: 1.179038e-02	ci left: 9.115235e-01	ci right 9.224322e-01	k: 9171	n:10000
KS ci ratio: 1.016296e-01	ci left: 1.228802e-01	ci right 1.361365e-01	k: 1294	n:10000
SLC10A1   10000 perm   2 sec   (6012 perm/sec)   p_kst 1.294000e-01   p_cons 9.171000e-01   p_joint 2.314000e-01

Joint ci ratio: 4.917014e-02	ci left: 2.351847e-01	ci right 2.470906e-01	k: 4822	n:20000
Cons ci ratio: 7.999333e-03	ci left: 9.193717e-01	ci right 9.268047e-01	k: 18463	n:20000
KS ci ratio: 7.052524e-02	ci left: 1.290611e-01	ci right 1.385456e-01	k: 2675	n:20000
SLC10A1   20000 perm   4 sec   (5276 perm/sec)   p_kst 1.337500e-01   p_cons 9.231500e-01   p_joint 2.411000e-01

Outputting figure to mutsig2_images.part000000000158/SLC10A1.3_1070_20000_0.13375_0.92315_0.2411.png
                gene_name: SLC10A1
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 45 percent done.
SLC10A7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.448599e-02	ci left: 4.272478e-01	ci right 4.467889e-01	k: 4370	n:10000
Cons ci ratio: 6.663749e-03	ci left: 9.685759e-01	ci right 9.751453e-01	k: 9720	n:10000
KS ci ratio: 5.584290e-02	ci left: 3.207846e-01	ci right 3.393145e-01	k: 3300	n:10000
SLC10A7   10000 perm   2 sec   (6113 perm/sec)   p_kst 3.300000e-01   p_cons 9.720000e-01   p_joint 4.370000e-01

Outputting figure to mutsig2_images.part000000000158/SLC10A7.3_1116_10000_0.33_0.972_0.437.png
                gene_name: SLC10A7
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 47 percent done.
SLC17A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.028294e-02	ci left: 4.764591e-01	ci right 4.961489e-01	k: 4863	n:10000
Cons ci ratio: 2.182909e-02	ci left: 7.548431e-01	ci right 7.716033e-01	k: 7633	n:10000
KS ci ratio: 5.117355e-02	ci left: 3.602279e-01	ci right 3.792481e-01	k: 3697	n:10000
SLC17A2   10000 perm   2 sec   (6104 perm/sec)   p_kst 3.697000e-01   p_cons 7.633000e-01   p_joint 4.863000e-01

Outputting figure to mutsig2_images.part000000000158/SLC17A2.3_1351_10000_0.3697_0.7633_0.4863.png
                gene_name: SLC17A2
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 49 percent done.
SLC17A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.616056e-02	ci left: 5.303714e-01	ci right 5.500052e-01	k: 5402	n:10000
Cons ci ratio: 7.854533e-02	ci left: 1.915089e-01	ci right 2.072666e-01	k: 1993	n:10000
KS ci ratio: 1.939234e-02	ci left: 7.954727e-01	ci right 8.111502e-01	k: 8034	n:10000
SLC17A4   10000 perm   2 sec   (5718 perm/sec)   p_kst 8.034000e-01   p_cons 1.993000e-01   p_joint 5.402000e-01

Outputting figure to mutsig2_images.part000000000158/SLC17A4.3_1538_10000_0.8034_0.1993_0.5402.png
                gene_name: SLC17A4
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 51 percent done.
SLC1A6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.538644e-02	ci left: 6.954487e-01	ci right 7.134321e-01	k: 7045	n:10000
Cons ci ratio: 4.666725e-02	ci left: 4.039239e-01	ci right 4.233264e-01	k: 4136	n:10000
KS ci ratio: 5.184518e-03	ci left: 9.801637e-01	ci right 9.853496e-01	k: 9829	n:10000
SLC1A6   10000 perm   2 sec   (5466 perm/sec)   p_kst 9.829000e-01   p_cons 4.136000e-01   p_joint 7.045000e-01

Outputting figure to mutsig2_images.part000000000158/SLC1A6.3_1731_10000_0.9829_0.4136_0.7045.png
                gene_name: SLC1A6
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.71 

Current progress: 53 percent done.
SIX3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.243091e-02	ci left: 4.505937e-01	ci right 4.702294e-01	k: 4604	n:10000
Cons ci ratio: 2.092556e-01	ci left: 3.034440e-02	ci right 3.753044e-02	k: 338	n:10000
KS ci ratio: 3.991392e-02	ci left: 4.810557e-01	ci right 5.007496e-01	k: 4909	n:10000
SIX3   10000 perm   2 sec   (6447 perm/sec)   p_kst 4.909000e-01   p_cons 3.380000e-02   p_joint 4.604000e-01

Joint ci ratio: 1.187710e-01	ci left: 4.857450e-02	ci right 5.475667e-02	k: 1032	n:20000
Cons ci ratio: 1.463025e-01	ci left: 3.210991e-02	ci right 3.722654e-02	k: 692	n:20000
KS ci ratio: 2.813819e-02	ci left: 4.854978e-01	ci right 4.994044e-01	k: 9849	n:20000
SIX3   20000 perm   4 sec   (5535 perm/sec)   p_kst 4.924500e-01   p_cons 3.460000e-02   p_joint 5.160000e-02

Joint ci ratio: 5.244928e-02	ci left: 1.528340e-01	ci right 1.610992e-01	k: 4708	n:30000
Cons ci ratio: 1.185439e-01	ci left: 3.307835e-02	ci right 3.727896e-02	k: 1054	n:30000
KS ci ratio: 2.311286e-02	ci left: 4.837946e-01	ci right 4.951408e-01	k: 14684	n:30000
SIX3   30000 perm   6 sec   (5217 perm/sec)   p_kst 4.894667e-01   p_cons 3.513333e-02   p_joint 1.569333e-01

Joint ci ratio: 5.553823e-02	ci left: 1.076657e-01	ci right 1.138409e-01	k: 4429	n:40000
Cons ci ratio: 1.041553e-01	ci left: 3.241597e-02	ci right 3.600207e-02	k: 1367	n:40000
KS ci ratio: 2.004129e-02	ci left: 4.839398e-01	ci right 4.937619e-01	k: 19554	n:40000
SIX3   40000 perm   8 sec   (5030 perm/sec)   p_kst 4.888500e-01   p_cons 3.417500e-02   p_joint 1.107250e-01

Joint ci ratio: 2.508595e-02	ci left: 3.239846e-01	ci right 3.322354e-01	k: 16405	n:50000
Cons ci ratio: 9.330092e-02	ci left: 3.250678e-02	ci right 3.570761e-02	k: 1704	n:50000
KS ci ratio: 1.792525e-02	ci left: 4.844692e-01	ci right 4.932521e-01	k: 24443	n:50000
SIX3   50000 perm   10 sec   (4877 perm/sec)   p_kst 4.888600e-01   p_cons 3.408000e-02   p_joint 3.281000e-01

Outputting figure to mutsig2_images.part000000000158/SIX3.2_1007_50000_0.48886_0.03408_0.3281.png
                gene_name: SIX3
               theta_stop: 0.093 
                    nperm: 50000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.034 
      ci_cons_bounds_left: 0.033 
     ci_cons_bounds_right: 0.036 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 55 percent done.
SKA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.335166e-02	ci left: 8.899537e-01	ci right 9.020145e-01	k: 8961	n:10000
Cons ci ratio: 1.696987e-02	ci left: 8.349054e-01	ci right 8.492947e-01	k: 8422	n:10000
KS ci ratio: 1.721173e-02	ci left: 8.310374e-01	ci right 8.455650e-01	k: 8384	n:10000
SKA1   10000 perm   2 sec   (6414 perm/sec)   p_kst 8.384000e-01   p_cons 8.422000e-01   p_joint 8.961000e-01

Outputting figure to mutsig2_images.part000000000158/SKA1.2_792_10000_0.8384_0.8422_0.8961.png
                gene_name: SKA1
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 56 percent done.
SKA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.537380e-02	ci left: 4.175767e-01	ci right 4.370657e-01	k: 4273	n:10000
Cons ci ratio: 1.402025e-01	ci left: 6.739585e-02	ci right 7.765485e-02	k: 724	n:10000
KS ci ratio: 5.591874e-02	ci left: 3.201890e-01	ci right 3.387104e-01	k: 3294	n:10000
SKA3   10000 perm   2 sec   (5773 perm/sec)   p_kst 3.294000e-01   p_cons 7.240000e-02   p_joint 4.273000e-01

Joint ci ratio: 4.792653e-02	ci left: 2.446057e-01	ci right 2.566669e-01	k: 5012	n:20000
Cons ci ratio: 1.013426e-01	ci left: 6.606220e-02	ci right 7.316354e-02	k: 1391	n:20000
KS ci ratio: 3.948245e-02	ci left: 3.235829e-01	ci right 3.366665e-01	k: 6602	n:20000
SKA3   20000 perm   4 sec   (5117 perm/sec)   p_kst 3.301000e-01   p_cons 6.955000e-02   p_joint 2.506000e-01

Joint ci ratio: 5.374826e-02	ci left: 1.465371e-01	ci right 1.546640e-01	k: 4517	n:30000
Cons ci ratio: 8.255541e-02	ci left: 6.700709e-02	ci right 7.280987e-02	k: 2096	n:30000
KS ci ratio: 3.225795e-02	ci left: 3.245132e-01	ci right 3.351865e-01	k: 9895	n:30000
SKA3   30000 perm   6 sec   (4850 perm/sec)   p_kst 3.298333e-01   p_cons 6.986667e-02   p_joint 1.505667e-01

Outputting figure to mutsig2_images.part000000000158/SKA3.2_1322_30000_0.32983_0.069867_0.15057.png
                gene_name: SKA3
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.070 
      ci_cons_bounds_left: 0.067 
     ci_cons_bounds_right: 0.073 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.15 

Current progress: 58 percent done.
SKAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.605868e-02	ci left: 6.843584e-01	ci right 7.025288e-01	k: 6935	n:10000
KS ci ratio: 2.922539e-02	ci left: 6.332173e-01	ci right 6.520995e-01	k: 6427	n:10000
SKAP2   10000 perm   2 sec   (6162 perm/sec)   p_kst 6.427000e-01   p_cons 6.935000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000158/SKAP2.2_1128_10000_0.6427_0.6935_1.png
                gene_name: SKAP2
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 60 percent done.
SKIV2L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.499942e-02	ci left: 2.579524e-01	ci right 2.753837e-01	k: 2666	n:10000
KS ci ratio: 2.040594e-02	ci left: 7.786397e-01	ci right 7.947930e-01	k: 7868	n:10000
SKIV2L2   10000 perm   2 sec   (5442 perm/sec)   p_kst 7.868000e-01   p_cons 2.666000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000158/SKIV2L2.2_3237_10000_0.7868_0.2666_1.png
                gene_name: SKIV2L2
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
SKP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.230750e-01	ci left: 9.906147e-04	ci right 2.720474e-03	k: 17	n:10000
Cons ci ratio: 9.724413e-03	ci left: 9.373421e-01	ci right 9.465983e-01	k: 9421	n:10000
KS ci ratio: 9.230750e-01	ci left: 9.906147e-04	ci right 2.720474e-03	k: 17	n:10000
SKP2   10000 perm   2 sec   (6458 perm/sec)   p_kst 1.700000e-03   p_cons 9.421000e-01   p_joint 1.700000e-03

Joint ci ratio: 4.012173e-01	ci left: 3.799699e-03	ci right 5.748583e-03	k: 94	n:20000
Cons ci ratio: 6.750307e-03	ci left: 9.407747e-01	ci right 9.471954e-01	k: 18881	n:20000
KS ci ratio: 5.327106e-01	ci left: 1.985643e-03	ci right 3.464850e-03	k: 53	n:20000
SKP2   20000 perm   4 sec   (5573 perm/sec)   p_kst 2.650000e-03   p_cons 9.440500e-01   p_joint 4.700000e-03

Joint ci ratio: 4.172532e-01	ci left: 2.323413e-03	ci right 3.575928e-03	k: 87	n:30000
Cons ci ratio: 5.449000e-03	ci left: 9.425986e-01	ci right 9.477814e-01	k: 28357	n:30000
KS ci ratio: 4.172532e-01	ci left: 2.323413e-03	ci right 3.575928e-03	k: 87	n:30000
SKP2   30000 perm   6 sec   (5260 perm/sec)   p_kst 2.900000e-03   p_cons 9.452333e-01   p_joint 2.900000e-03

Joint ci ratio: 3.603281e-01	ci left: 2.419637e-03	ci right 3.504518e-03	k: 117	n:40000
Cons ci ratio: 4.712236e-03	ci left: 9.431030e-01	ci right 9.475821e-01	k: 37815	n:40000
KS ci ratio: 3.603281e-01	ci left: 2.419637e-03	ci right 3.504518e-03	k: 117	n:40000
SKP2   40000 perm   8 sec   (5061 perm/sec)   p_kst 2.925000e-03   p_cons 9.453750e-01   p_joint 2.925000e-03

Joint ci ratio: 3.195830e-01	ci left: 2.521281e-03	ci right 3.497837e-03	k: 149	n:50000
Cons ci ratio: 4.190686e-03	ci left: 9.439422e-01	ci right 9.479259e-01	k: 47298	n:50000
KS ci ratio: 3.195830e-01	ci left: 2.521281e-03	ci right 3.497837e-03	k: 149	n:50000
SKP2   50000 perm   10 sec   (4913 perm/sec)   p_kst 2.980000e-03   p_cons 9.459600e-01   p_joint 2.980000e-03

Joint ci ratio: 2.901263e-01	ci left: 2.593710e-03	ci right 3.488764e-03	k: 181	n:60000
Cons ci ratio: 3.834557e-03	ci left: 9.438737e-01	ci right 9.475164e-01	k: 56743	n:60000
KS ci ratio: 2.901263e-01	ci left: 2.593710e-03	ci right 3.488764e-03	k: 181	n:60000
SKP2   60000 perm   13 sec   (4792 perm/sec)   p_kst 3.016667e-03   p_cons 9.457167e-01   p_joint 3.016667e-03

Joint ci ratio: 2.694550e-01	ci left: 2.608437e-03	ci right 3.433613e-03	k: 210	n:70000
Cons ci ratio: 3.542223e-03	ci left: 9.442420e-01	ci right 9.476067e-01	k: 66216	n:70000
KS ci ratio: 2.694550e-01	ci left: 2.608437e-03	ci right 3.433613e-03	k: 210	n:70000
SKP2   70000 perm   15 sec   (4673 perm/sec)   p_kst 3.000000e-03   p_cons 9.459429e-01   p_joint 3.000000e-03

Joint ci ratio: 2.490367e-01	ci left: 2.703199e-03	ci right 3.483527e-03	k: 246	n:80000
Cons ci ratio: 3.311147e-03	ci left: 9.444240e-01	ci right 9.475686e-01	k: 75681	n:80000
KS ci ratio: 2.490367e-01	ci left: 2.703199e-03	ci right 3.483527e-03	k: 246	n:80000
SKP2   80000 perm   18 sec   (4569 perm/sec)   p_kst 3.075000e-03   p_cons 9.460125e-01   p_joint 3.075000e-03

Joint ci ratio: 2.347413e-01	ci left: 2.726431e-03	ci right 3.461731e-03	k: 277	n:90000
Cons ci ratio: 3.108187e-03	ci left: 9.449648e-01	ci right 9.479174e-01	k: 85181	n:90000
KS ci ratio: 2.347413e-01	ci left: 2.726431e-03	ci right 3.461731e-03	k: 277	n:90000
SKP2   90000 perm   20 sec   (4471 perm/sec)   p_kst 3.077778e-03   p_cons 9.464556e-01   p_joint 3.077778e-03

Joint ci ratio: 2.256036e-01	ci left: 2.670520e-03	ci right 3.358807e-03	k: 300	n:100000
Cons ci ratio: 2.947368e-03	ci left: 9.450873e-01	ci right 9.478867e-01	k: 94650	n:100000
KS ci ratio: 2.256036e-01	ci left: 2.670520e-03	ci right 3.358807e-03	k: 300	n:100000
SKP2   100000 perm   23 sec   (4355 perm/sec)   p_kst 3.000000e-03   p_cons 9.465000e-01   p_joint 3.000000e-03

Joint ci ratio: 2.167858e-01	ci left: 2.642426e-03	ci right 3.293309e-03	k: 325	n:110000
Cons ci ratio: 2.802360e-03	ci left: 9.454389e-01	ci right 9.481011e-01	k: 104146	n:110000
KS ci ratio: 2.167858e-01	ci left: 2.642426e-03	ci right 3.293309e-03	k: 325	n:110000
SKP2   110000 perm   26 sec   (4268 perm/sec)   p_kst 2.954545e-03   p_cons 9.467818e-01   p_joint 2.954545e-03

Joint ci ratio: 2.077432e-01	ci left: 2.651049e-03	ci right 3.273356e-03	k: 354	n:120000
Cons ci ratio: 2.686104e-03	ci left: 9.453803e-01	ci right 9.479313e-01	k: 113600	n:120000
KS ci ratio: 2.077432e-01	ci left: 2.651049e-03	ci right 3.273356e-03	k: 354	n:120000
SKP2   120000 perm   29 sec   (4188 perm/sec)   p_kst 2.950000e-03   p_cons 9.466667e-01   p_joint 2.950000e-03

Joint ci ratio: 1.989672e-01	ci left: 2.680751e-03	ci right 3.280222e-03	k: 386	n:130000
Cons ci ratio: 2.583595e-03	ci left: 9.453173e-01	ci right 9.477704e-01	k: 123052	n:130000
KS ci ratio: 1.989672e-01	ci left: 2.680751e-03	ci right 3.280222e-03	k: 386	n:130000
SKP2   130000 perm   32 sec   (4111 perm/sec)   p_kst 2.969231e-03   p_cons 9.465538e-01   p_joint 2.969231e-03

Joint ci ratio: 1.926052e-01	ci left: 2.665878e-03	ci right 3.240728e-03	k: 412	n:140000
Cons ci ratio: 2.487238e-03	ci left: 9.454600e-01	ci right 9.478215e-01	k: 132531	n:140000
KS ci ratio: 1.926052e-01	ci left: 2.665878e-03	ci right 3.240728e-03	k: 412	n:140000
SKP2   140000 perm   35 sec   (4038 perm/sec)   p_kst 2.942857e-03   p_cons 9.466500e-01   p_joint 2.942857e-03

Joint ci ratio: 1.887674e-01	ci left: 2.596067e-03	ci right 3.143429e-03	k: 429	n:150000
Cons ci ratio: 2.404715e-03	ci left: 9.454233e-01	ci right 9.477061e-01	k: 141986	n:150000
KS ci ratio: 1.887674e-01	ci left: 2.596067e-03	ci right 3.143429e-03	k: 429	n:150000
SKP2   150000 perm   38 sec   (3962 perm/sec)   p_kst 2.860000e-03   p_cons 9.465733e-01   p_joint 2.860000e-03

Joint ci ratio: 1.839162e-01	ci left: 2.570855e-03	ci right 3.097417e-03	k: 452	n:160000
Cons ci ratio: 2.328453e-03	ci left: 9.454556e-01	ci right 9.476657e-01	k: 151451	n:160000
KS ci ratio: 1.839162e-01	ci left: 2.570855e-03	ci right 3.097417e-03	k: 452	n:160000
SKP2   160000 perm   41 sec   (3896 perm/sec)   p_kst 2.825000e-03   p_cons 9.465687e-01   p_joint 2.825000e-03

Joint ci ratio: 1.784831e-01	ci left: 2.576865e-03	ci right 3.087383e-03	k: 480	n:170000
Cons ci ratio: 2.262035e-03	ci left: 9.453485e-01	ci right 9.474951e-01	k: 160893	n:170000
KS ci ratio: 1.784831e-01	ci left: 2.576865e-03	ci right 3.087383e-03	k: 480	n:170000
SKP2   170000 perm   44 sec   (3824 perm/sec)   p_kst 2.823529e-03   p_cons 9.464294e-01   p_joint 2.823529e-03

Joint ci ratio: 1.726563e-01	ci left: 2.608988e-03	ci right 3.107238e-03	k: 513	n:180000
Cons ci ratio: 2.197731e-03	ci left: 9.454056e-01	ci right 9.474911e-01	k: 170362	n:180000
KS ci ratio: 1.726563e-01	ci left: 2.608988e-03	ci right 3.107238e-03	k: 513	n:180000
SKP2   180000 perm   48 sec   (3752 perm/sec)   p_kst 2.850000e-03   p_cons 9.464556e-01   p_joint 2.850000e-03

Joint ci ratio: 1.679823e-01	ci left: 2.617799e-03	ci right 3.102829e-03	k: 542	n:190000
Cons ci ratio: 2.134725e-03	ci left: 9.456433e-01	ci right 9.476693e-01	k: 179866	n:190000
KS ci ratio: 1.679823e-01	ci left: 2.617799e-03	ci right 3.102829e-03	k: 542	n:190000
SKP2   190000 perm   52 sec   (3685 perm/sec)   p_kst 2.852632e-03   p_cons 9.466632e-01   p_joint 2.852632e-03

Joint ci ratio: 1.633823e-01	ci left: 2.635485e-03	ci right 3.109106e-03	k: 573	n:200000
Cons ci ratio: 2.082278e-03	ci left: 9.455905e-01	ci right 9.475665e-01	k: 189317	n:200000
KS ci ratio: 1.633823e-01	ci left: 2.635485e-03	ci right 3.109106e-03	k: 573	n:200000
SKP2   200000 perm   55 sec   (3619 perm/sec)   p_kst 2.865000e-03   p_cons 9.465850e-01   p_joint 2.865000e-03

Joint ci ratio: 1.596708e-01	ci left: 2.633360e-03	ci right 3.094818e-03	k: 600	n:210000
Cons ci ratio: 2.030451e-03	ci left: 9.456971e-01	ci right 9.476239e-01	k: 198800	n:210000
KS ci ratio: 1.596708e-01	ci left: 2.633360e-03	ci right 3.094818e-03	k: 600	n:210000
SKP2   210000 perm   59 sec   (3563 perm/sec)   p_kst 2.857143e-03   p_cons 9.466667e-01   p_joint 2.857143e-03

Joint ci ratio: 1.567025e-01	ci left: 2.614067e-03	ci right 3.062827e-03	k: 623	n:220000
Cons ci ratio: 1.980250e-03	ci left: 9.458998e-01	ci right 9.477793e-01	k: 208306	n:220000
KS ci ratio: 1.567025e-01	ci left: 2.614067e-03	ci right 3.062827e-03	k: 623	n:220000
SKP2   220000 perm   63 sec   (3510 perm/sec)   p_kst 2.831818e-03   p_cons 9.468455e-01   p_joint 2.831818e-03

Joint ci ratio: 1.530657e-01	ci left: 2.625793e-03	ci right 3.065146e-03	k: 653	n:230000
Cons ci ratio: 1.936925e-03	ci left: 9.459100e-01	ci right 9.477482e-01	k: 217772	n:230000
KS ci ratio: 1.530657e-01	ci left: 2.625793e-03	ci right 3.065146e-03	k: 653	n:230000
SKP2   230000 perm   66 sec   (3459 perm/sec)   p_kst 2.839130e-03   p_cons 9.468348e-01   p_joint 2.839130e-03

Joint ci ratio: 1.503336e-01	ci left: 2.612588e-03	ci right 3.041226e-03	k: 677	n:240000
Cons ci ratio: 1.898834e-03	ci left: 9.457854e-01	ci right 9.475871e-01	k: 227206	n:240000
KS ci ratio: 1.503336e-01	ci left: 2.612588e-03	ci right 3.041226e-03	k: 677	n:240000
SKP2   240000 perm   70 sec   (3407 perm/sec)   p_kst 2.820833e-03   p_cons 9.466917e-01   p_joint 2.820833e-03

Joint ci ratio: 1.472179e-01	ci left: 2.619767e-03	ci right 3.039891e-03	k: 706	n:250000
Cons ci ratio: 1.862304e-03	ci left: 9.457034e-01	ci right 9.474702e-01	k: 236648	n:250000
KS ci ratio: 1.472179e-01	ci left: 2.619767e-03	ci right 3.039891e-03	k: 706	n:250000
SKP2   250000 perm   75 sec   (3353 perm/sec)   p_kst 2.824000e-03   p_cons 9.465920e-01   p_joint 2.824000e-03

Joint ci ratio: 1.444852e-01	ci left: 2.619063e-03	ci right 3.030606e-03	k: 733	n:260000
Cons ci ratio: 1.826965e-03	ci left: 9.456746e-01	ci right 9.474077e-01	k: 246102	n:260000
KS ci ratio: 1.444852e-01	ci left: 2.619063e-03	ci right 3.030606e-03	k: 733	n:260000
SKP2   260000 perm   79 sec   (3304 perm/sec)   p_kst 2.819231e-03   p_cons 9.465462e-01   p_joint 2.819231e-03

Joint ci ratio: 1.422747e-01	ci left: 2.604188e-03	ci right 3.006602e-03	k: 756	n:270000
Cons ci ratio: 1.792448e-03	ci left: 9.457117e-01	ci right 9.474120e-01	k: 255573	n:270000
KS ci ratio: 1.422747e-01	ci left: 2.604188e-03	ci right 3.006602e-03	k: 756	n:270000
SKP2   270000 perm   83 sec   (3258 perm/sec)   p_kst 2.800000e-03   p_cons 9.465667e-01   p_joint 2.800000e-03

Joint ci ratio: 1.401626e-01	ci left: 2.590421e-03	ci right 2.984268e-03	k: 779	n:280000
Cons ci ratio: 1.759629e-03	ci left: 9.457572e-01	ci right 9.474264e-01	k: 265047	n:280000
KS ci ratio: 1.401626e-01	ci left: 2.590421e-03	ci right 2.984268e-03	k: 779	n:280000
SKP2   280000 perm   87 sec   (3211 perm/sec)   p_kst 2.782143e-03   p_cons 9.465964e-01   p_joint 2.782143e-03

Joint ci ratio: 1.372027e-01	ci left: 2.614272e-03	ci right 3.002666e-03	k: 813	n:290000
Cons ci ratio: 1.729552e-03	ci left: 9.457408e-01	ci right 9.473813e-01	k: 274504	n:290000
KS ci ratio: 1.372027e-01	ci left: 2.614272e-03	ci right 3.002666e-03	k: 813	n:290000
SKP2   290000 perm   92 sec   (3162 perm/sec)   p_kst 2.803448e-03   p_cons 9.465655e-01   p_joint 2.803448e-03

Joint ci ratio: 1.349022e-01	ci left: 2.617286e-03	ci right 2.999085e-03	k: 841	n:300000
Cons ci ratio: 1.700573e-03	ci left: 9.457492e-01	ci right 9.473622e-01	k: 283968	n:300000
KS ci ratio: 1.349022e-01	ci left: 2.617286e-03	ci right 2.999085e-03	k: 841	n:300000
SKP2   300000 perm   96 sec   (3120 perm/sec)   p_kst 2.803333e-03   p_cons 9.465600e-01   p_joint 2.803333e-03

Joint ci ratio: 1.328669e-01	ci left: 2.613919e-03	ci right 2.989020e-03	k: 867	n:310000
Cons ci ratio: 1.672150e-03	ci left: 9.458093e-01	ci right 9.473953e-01	k: 293448	n:310000
KS ci ratio: 1.328669e-01	ci left: 2.613919e-03	ci right 2.989020e-03	k: 867	n:310000
SKP2   310000 perm   101 sec   (3077 perm/sec)   p_kst 2.796774e-03   p_cons 9.466065e-01   p_joint 2.796774e-03

Joint ci ratio: 1.308476e-01	ci left: 2.613826e-03	ci right 2.982770e-03	k: 894	n:320000
Cons ci ratio: 1.646224e-03	ci left: 9.457965e-01	ci right 9.473579e-01	k: 302906	n:320000
KS ci ratio: 1.308476e-01	ci left: 2.613826e-03	ci right 2.982770e-03	k: 894	n:320000
SKP2   320000 perm   105 sec   (3036 perm/sec)   p_kst 2.793750e-03   p_cons 9.465813e-01   p_joint 2.793750e-03

Joint ci ratio: 1.281533e-01	ci left: 2.646043e-03	ci right 3.011259e-03	k: 932	n:330000
Cons ci ratio: 1.621419e-03	ci left: 9.457878e-01	ci right 9.473256e-01	k: 312365	n:330000
KS ci ratio: 1.281533e-01	ci left: 2.646043e-03	ci right 3.011259e-03	k: 932	n:330000
SKP2   330000 perm   110 sec   (2993 perm/sec)   p_kst 2.824242e-03   p_cons 9.465606e-01   p_joint 2.824242e-03

Joint ci ratio: 1.260099e-01	ci left: 2.659345e-03	ci right 3.019799e-03	k: 964	n:340000
Cons ci ratio: 1.595519e-03	ci left: 9.459189e-01	ci right 9.474323e-01	k: 321871	n:340000
KS ci ratio: 1.260099e-01	ci left: 2.659345e-03	ci right 3.019799e-03	k: 964	n:340000
SKP2   340000 perm   115 sec   (2956 perm/sec)   p_kst 2.835294e-03   p_cons 9.466794e-01   p_joint 2.835294e-03

Joint ci ratio: 1.242834e-01	ci left: 2.658092e-03	ci right 3.013076e-03	k: 991	n:350000
Cons ci ratio: 1.574197e-03	ci left: 9.458241e-01	ci right 9.473170e-01	k: 331301	n:350000
KS ci ratio: 1.242834e-01	ci left: 2.658092e-03	ci right 3.013076e-03	k: 991	n:350000
SKP2   350000 perm   120 sec   (2919 perm/sec)   p_kst 2.831429e-03   p_cons 9.465743e-01   p_joint 2.831429e-03

Joint ci ratio: 1.226261e-01	ci left: 2.656939e-03	ci right 3.006695e-03	k: 1018	n:360000
Cons ci ratio: 1.551783e-03	ci left: 9.458606e-01	ci right 9.473322e-01	k: 340776	n:360000
KS ci ratio: 1.226261e-01	ci left: 2.656939e-03	ci right 3.006695e-03	k: 1018	n:360000
SKP2   360000 perm   125 sec   (2883 perm/sec)   p_kst 2.827778e-03   p_cons 9.466000e-01   p_joint 2.827778e-03

Joint ci ratio: 1.204572e-01	ci left: 2.682092e-03	ci right 3.028469e-03	k: 1055	n:370000
Cons ci ratio: 1.530382e-03	ci left: 9.458897e-01	ci right 9.473411e-01	k: 350249	n:370000
KS ci ratio: 1.204572e-01	ci left: 2.682092e-03	ci right 3.028469e-03	k: 1055	n:370000
SKP2   370000 perm   130 sec   (2848 perm/sec)   p_kst 2.851351e-03   p_cons 9.466189e-01   p_joint 2.851351e-03

Joint ci ratio: 1.190568e-01	ci left: 2.675329e-03	ci right 3.016533e-03	k: 1080	n:380000
Cons ci ratio: 1.509882e-03	ci left: 9.459149e-01	ci right 9.473467e-01	k: 359721	n:380000
KS ci ratio: 1.190568e-01	ci left: 2.675329e-03	ci right 3.016533e-03	k: 1080	n:380000
SKP2   380000 perm   135 sec   (2815 perm/sec)   p_kst 2.842105e-03   p_cons 9.466342e-01   p_joint 2.842105e-03

Joint ci ratio: 1.172794e-01	ci left: 2.688846e-03	ci right 3.026300e-03	k: 1113	n:390000
Cons ci ratio: 1.490222e-03	ci left: 9.459362e-01	ci right 9.473494e-01	k: 369192	n:390000
KS ci ratio: 1.172794e-01	ci left: 2.688846e-03	ci right 3.026300e-03	k: 1113	n:390000
SKP2   390000 perm   140 sec   (2780 perm/sec)   p_kst 2.853846e-03   p_cons 9.466462e-01   p_joint 2.853846e-03

Joint ci ratio: 1.156299e-01	ci left: 2.699295e-03	ci right 3.032971e-03	k: 1145	n:400000
Cons ci ratio: 1.470800e-03	ci left: 9.459918e-01	ci right 9.473867e-01	k: 378677	n:400000
KS ci ratio: 1.156299e-01	ci left: 2.699295e-03	ci right 3.032971e-03	k: 1145	n:400000
SKP2   400000 perm   146 sec   (2748 perm/sec)   p_kst 2.862500e-03   p_cons 9.466925e-01   p_joint 2.862500e-03

Joint ci ratio: 1.144876e-01	ci left: 2.687941e-03	ci right 3.016708e-03	k: 1168	n:410000
Cons ci ratio: 1.453908e-03	ci left: 9.459197e-01	ci right 9.472984e-01	k: 388111	n:410000
KS ci ratio: 1.144876e-01	ci left: 2.687941e-03	ci right 3.016708e-03	k: 1168	n:410000
SKP2   410000 perm   151 sec   (2715 perm/sec)   p_kst 2.848780e-03   p_cons 9.466122e-01   p_joint 2.848780e-03

Joint ci ratio: 1.133784e-01	ci left: 2.677143e-03	ci right 3.001205e-03	k: 1191	n:420000
Cons ci ratio: 1.436871e-03	ci left: 9.459014e-01	ci right 9.472639e-01	k: 397566	n:420000
KS ci ratio: 1.133784e-01	ci left: 2.677143e-03	ci right 3.001205e-03	k: 1191	n:420000
SKP2   420000 perm   157 sec   (2674 perm/sec)   p_kst 2.835714e-03   p_cons 9.465857e-01   p_joint 2.835714e-03

Joint ci ratio: 1.118402e-01	ci left: 2.689467e-03	ci right 3.010313e-03	k: 1224	n:430000
Cons ci ratio: 1.420778e-03	ci left: 9.458583e-01	ci right 9.472054e-01	k: 407010	n:430000
KS ci ratio: 1.118402e-01	ci left: 2.689467e-03	ci right 3.010313e-03	k: 1224	n:430000
SKP2   430000 perm   163 sec   (2640 perm/sec)   p_kst 2.846512e-03   p_cons 9.465349e-01   p_joint 2.846512e-03

Joint ci ratio: 1.100128e-01	ci left: 2.718942e-03	ci right 3.037660e-03	k: 1265	n:440000
Cons ci ratio: 1.405339e-03	ci left: 9.458082e-01	ci right 9.471405e-01	k: 416450	n:440000
KS ci ratio: 1.100128e-01	ci left: 2.718942e-03	ci right 3.037660e-03	k: 1265	n:440000
SKP2   440000 perm   169 sec   (2610 perm/sec)   p_kst 2.875000e-03   p_cons 9.464773e-01   p_joint 2.875000e-03

Joint ci ratio: 1.089852e-01	ci left: 2.710393e-03	ci right 3.024951e-03	k: 1289	n:450000
Cons ci ratio: 1.389110e-03	ci left: 9.458542e-01	ci right 9.471712e-01	k: 425932	n:450000
KS ci ratio: 1.089852e-01	ci left: 2.710393e-03	ci right 3.024951e-03	k: 1289	n:450000
SKP2   450000 perm   174 sec   (2581 perm/sec)   p_kst 2.864444e-03   p_cons 9.465156e-01   p_joint 2.864444e-03

Joint ci ratio: 1.077804e-01	ci left: 2.712806e-03	ci right 3.023943e-03	k: 1318	n:460000
Cons ci ratio: 1.374257e-03	ci left: 9.458371e-01	ci right 9.471399e-01	k: 435386	n:460000
KS ci ratio: 1.077804e-01	ci left: 2.712806e-03	ci right 3.023943e-03	k: 1318	n:460000
SKP2   460000 perm   180 sec   (2553 perm/sec)   p_kst 2.865217e-03   p_cons 9.464913e-01   p_joint 2.865217e-03

Joint ci ratio: 1.065354e-01	ci left: 2.719277e-03	ci right 3.027328e-03	k: 1349	n:470000
Cons ci ratio: 1.360269e-03	ci left: 9.457908e-01	ci right 9.470803e-01	k: 444826	n:470000
KS ci ratio: 1.065354e-01	ci left: 2.719277e-03	ci right 3.027328e-03	k: 1349	n:470000
SKP2   470000 perm   186 sec   (2524 perm/sec)   p_kst 2.870213e-03   p_cons 9.464383e-01   p_joint 2.870213e-03

Joint ci ratio: 1.056400e-01	ci left: 2.709270e-03	ci right 3.013447e-03	k: 1372	n:480000
Cons ci ratio: 1.346008e-03	ci left: 9.457989e-01	ci right 9.470749e-01	k: 454291	n:480000
KS ci ratio: 1.056400e-01	ci left: 2.709270e-03	ci right 3.013447e-03	k: 1372	n:480000
SKP2   480000 perm   192 sec   (2497 perm/sec)   p_kst 2.858333e-03   p_cons 9.464396e-01   p_joint 2.858333e-03

Joint ci ratio: 1.044670e-01	ci left: 2.715582e-03	ci right 3.016875e-03	k: 1403	n:490000
Cons ci ratio: 1.332507e-03	ci left: 9.457821e-01	ci right 9.470452e-01	k: 463744	n:490000
KS ci ratio: 1.044670e-01	ci left: 2.715582e-03	ci right 3.016875e-03	k: 1403	n:490000
SKP2   490000 perm   199 sec   (2467 perm/sec)   p_kst 2.863265e-03   p_cons 9.464163e-01   p_joint 2.863265e-03

Joint ci ratio: 1.035859e-01	ci left: 2.708021e-03	ci right 3.005786e-03	k: 1427	n:500000
Cons ci ratio: 1.319067e-03	ci left: 9.457922e-01	ci right 9.470426e-01	k: 473210	n:500000
KS ci ratio: 1.035859e-01	ci left: 2.708021e-03	ci right 3.005786e-03	k: 1427	n:500000
SKP2   500000 perm   205 sec   (2442 perm/sec)   p_kst 2.854000e-03   p_cons 9.464200e-01   p_joint 2.854000e-03

Joint ci ratio: 1.025145e-01	ci left: 2.712230e-03	ci right 3.007188e-03	k: 1457	n:510000
Cons ci ratio: 1.306227e-03	ci left: 9.457862e-01	ci right 9.470244e-01	k: 482668	n:510000
KS ci ratio: 1.025145e-01	ci left: 2.712230e-03	ci right 3.007188e-03	k: 1457	n:510000
SKP2   510000 perm   211 sec   (2416 perm/sec)   p_kst 2.856863e-03   p_cons 9.464078e-01   p_joint 2.856863e-03

Joint ci ratio: 1.015099e-01	ci left: 2.714418e-03	ci right 3.006549e-03	k: 1486	n:520000
Cons ci ratio: 1.293093e-03	ci left: 9.458327e-01	ci right 9.470585e-01	k: 492153	n:520000
KS ci ratio: 1.015099e-01	ci left: 2.714418e-03	ci right 3.006549e-03	k: 1486	n:520000
SKP2   520000 perm   218 sec   (2390 perm/sec)   p_kst 2.857692e-03   p_cons 9.464481e-01   p_joint 2.857692e-03

Joint ci ratio: 1.007678e-01	ci left: 2.703662e-03	ci right 2.992382e-03	k: 1508	n:530000
Cons ci ratio: 1.279678e-03	ci left: 9.459306e-01	ci right 9.471437e-01	k: 501666	n:530000
KS ci ratio: 1.007678e-01	ci left: 2.703662e-03	ci right 2.992382e-03	k: 1508	n:530000
SKP2   530000 perm   224 sec   (2366 perm/sec)   p_kst 2.845283e-03   p_cons 9.465396e-01   p_joint 2.845283e-03

Joint ci ratio: 9.984580e-02	ci left: 2.704145e-03	ci right 2.990119e-03	k: 1536	n:540000
Cons ci ratio: 1.268270e-03	ci left: 9.458965e-01	ci right 9.470987e-01	k: 511110	n:540000
KS ci ratio: 9.984580e-02	ci left: 2.704145e-03	ci right 2.990119e-03	k: 1536	n:540000
SKP2   540000 perm   231 sec   (2340 perm/sec)   p_kst 2.844444e-03   p_cons 9.465000e-01   p_joint 2.844444e-03

Outputting figure to mutsig2_images.part000000000158/SKP2.2_1491_540000_0.0028444_0.9465_0.0028444.png
                gene_name: SKP2
               theta_stop: 0.100 
                    nperm: 540000 
                     p_ks: 0.0028 
        ci_ks_bounds_left: 0.0027 
       ci_ks_bounds_right: 0.0030 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.0028 
     ci_joint_bounds_left: 0.0027 
    ci_joint_bounds_right: 0.0030 

Current progress: 64 percent done.
SLA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.666725e-02	ci left: 4.039239e-01	ci right 4.233264e-01	k: 4136	n:10000
Cons ci ratio: 8.020691e-02	ci left: 1.850099e-01	ci right 2.005695e-01	k: 1927	n:10000
KS ci ratio: 5.457943e-02	ci left: 3.309118e-01	ci right 3.495813e-01	k: 3402	n:10000
SLA   10000 perm   2 sec   (6423 perm/sec)   p_kst 3.402000e-01   p_cons 1.927000e-01   p_joint 4.136000e-01

Outputting figure to mutsig2_images.part000000000158/SLA.2_994_10000_0.3402_0.1927_0.4136.png
                gene_name: SLA
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 65 percent done.
SLAIN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.271458e-02	ci left: 5.796832e-01	ci right 5.990647e-01	k: 5894	n:10000
KS ci ratio: 1.097680e-01	ci left: 1.068582e-01	ci right 1.193681e-01	k: 1130	n:10000
SLAIN2   10000 perm   2 sec   (5758 perm/sec)   p_kst 1.130000e-01   p_cons 5.894000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 2.391930e-02	ci left: 5.662598e-01	ci right 5.800189e-01	k: 11463	n:20000
KS ci ratio: 7.736872e-02	ci left: 1.093319e-01	ci right 1.181808e-01	k: 2274	n:20000
SLAIN2   20000 perm   4 sec   (5128 perm/sec)   p_kst 1.137000e-01   p_cons 5.731500e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000158/SLAIN2.2_1778_20000_0.1137_0.57315_1.png
                gene_name: SLAIN2
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
SLAMF6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.892670e-02	ci left: 1.289466e-01	ci right 1.424664e-01	k: 1356	n:10000
Cons ci ratio: 1.661901e-01	ci left: 4.830553e-02	ci right 5.715732e-02	k: 526	n:10000
KS ci ratio: 1.528930e-02	ci left: 8.612085e-01	ci right 8.745764e-01	k: 8680	n:10000
SLAMF6   10000 perm   2 sec   (6592 perm/sec)   p_kst 8.680000e-01   p_cons 5.260000e-02   p_joint 1.356000e-01

Joint ci ratio: 9.661324e-02	ci left: 7.236421e-02	ci right 7.975961e-02	k: 1520	n:20000
Cons ci ratio: 1.071685e-01	ci left: 5.933027e-02	ci right 6.609755e-02	k: 1253	n:20000
KS ci ratio: 1.088792e-02	ci left: 8.615558e-01	ci right 8.710374e-01	k: 17327	n:20000
SLAMF6   20000 perm   4 sec   (5707 perm/sec)   p_kst 8.663500e-01   p_cons 6.265000e-02   p_joint 7.600000e-02

Joint ci ratio: 7.384346e-02	ci left: 8.268711e-02	ci right 8.906003e-02	k: 2575	n:30000
Cons ci ratio: 8.705978e-02	ci left: 6.053764e-02	ci right 6.608064e-02	k: 1898	n:30000
KS ci ratio: 8.863460e-03	ci left: 8.631389e-01	ci right 8.708565e-01	k: 26011	n:30000
SLAMF6   30000 perm   6 sec   (5357 perm/sec)   p_kst 8.670333e-01   p_cons 6.326667e-02   p_joint 8.583333e-02

Outputting figure to mutsig2_images.part000000000158/SLAMF6.2_1031_30000_0.86703_0.063267_0.085833.png
                gene_name: SLAMF6
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.063 
      ci_cons_bounds_left: 0.061 
     ci_cons_bounds_right: 0.066 
                  p_joint: 0.086 
     ci_joint_bounds_left: 0.083 
    ci_joint_bounds_right: 0.089 

Current progress: 69 percent done.
SLC10A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.609972e-02	ci left: 8.486593e-01	ci right 8.625329e-01	k: 8557	n:10000
KS ci ratio: 6.364781e-02	ci left: 2.661660e-01	ci right 2.837652e-01	k: 2749	n:10000
SLC10A2   10000 perm   2 sec   (6464 perm/sec)   p_kst 2.749000e-01   p_cons 8.557000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000158/SLC10A2.2_1071_10000_0.2749_0.8557_1.png
                gene_name: SLC10A2
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
SLC12A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.267260e-02	ci left: 2.723040e-01	ci right 2.900236e-01	k: 2811	n:10000
Cons ci ratio: 1.664969e-02	ci left: 8.399972e-01	ci right 8.542000e-01	k: 8472	n:10000
KS ci ratio: 7.573248e-02	ci left: 2.032352e-01	ci right 2.193333e-01	k: 2112	n:10000
SLC12A2   10000 perm   2 sec   (4753 perm/sec)   p_kst 2.112000e-01   p_cons 8.472000e-01   p_joint 2.811000e-01

Outputting figure to mutsig2_images.part000000000158/SLC12A2.2_3747_10000_0.2112_0.8472_0.2811.png
                gene_name: SLC12A2
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 73 percent done.
SLC12A8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.112175e-02	ci left: 7.666861e-01	ci right 7.831535e-01	k: 7750	n:10000
Cons ci ratio: 1.493392e-02	ci left: 8.666216e-01	ci right 8.797602e-01	k: 8733	n:10000
KS ci ratio: 6.163475e-02	ci left: 2.790384e-01	ci right 2.968853e-01	k: 2879	n:10000
SLC12A8   10000 perm   2 sec   (5733 perm/sec)   p_kst 2.879000e-01   p_cons 8.733000e-01   p_joint 7.750000e-01

Outputting figure to mutsig2_images.part000000000158/SLC12A8.2_2197_10000_0.2879_0.8733_0.775.png
                gene_name: SLC12A8
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 75 percent done.
SLC13A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.011330e+00	ci left: 7.655977e-04	ci right 2.347848e-03	k: 14	n:10000
Cons ci ratio: 3.490513e-02	ci left: 5.479000e-01	ci right 5.674664e-01	k: 5577	n:10000
KS ci ratio: 1.011330e+00	ci left: 7.655977e-04	ci right 2.347848e-03	k: 14	n:10000
SLC13A2   10000 perm   2 sec   (6135 perm/sec)   p_kst 1.400000e-03   p_cons 5.577000e-01   p_joint 1.400000e-03

Joint ci ratio: 6.923928e-01	ci left: 1.053385e-03	ci right 2.199386e-03	k: 31	n:20000
Cons ci ratio: 2.478092e-02	ci left: 5.488310e-01	ci right 5.626528e-01	k: 11115	n:20000
KS ci ratio: 6.923928e-01	ci left: 1.053385e-03	ci right 2.199386e-03	k: 31	n:20000
SLC13A2   20000 perm   4 sec   (5357 perm/sec)   p_kst 1.550000e-03   p_cons 5.557500e-01   p_joint 1.550000e-03

Joint ci ratio: 5.595332e-01	ci left: 1.179942e-03	ci right 2.120815e-03	k: 48	n:30000
Cons ci ratio: 2.018143e-02	ci left: 5.513904e-01	ci right 5.626652e-01	k: 16711	n:30000
KS ci ratio: 5.595332e-01	ci left: 1.179942e-03	ci right 2.120815e-03	k: 48	n:30000
SLC13A2   30000 perm   6 sec   (4981 perm/sec)   p_kst 1.600000e-03   p_cons 5.570333e-01   p_joint 1.600000e-03

Joint ci ratio: 5.099577e-01	ci left: 1.101224e-03	ci right 1.874063e-03	k: 58	n:40000
Cons ci ratio: 1.751533e-02	ci left: 5.510895e-01	ci right 5.608524e-01	k: 22239	n:40000
KS ci ratio: 5.099577e-01	ci left: 1.101224e-03	ci right 1.874063e-03	k: 58	n:40000
SLC13A2   40000 perm   8 sec   (4820 perm/sec)   p_kst 1.450000e-03   p_cons 5.559750e-01   p_joint 1.450000e-03

Joint ci ratio: 4.379142e-01	ci left: 1.251094e-03	ci right 1.968768e-03	k: 79	n:50000
Cons ci ratio: 1.562366e-02	ci left: 5.529531e-01	ci right 5.616803e-01	k: 27866	n:50000
KS ci ratio: 4.379142e-01	ci left: 1.251094e-03	ci right 1.968768e-03	k: 79	n:50000
SLC13A2   50000 perm   11 sec   (4696 perm/sec)   p_kst 1.580000e-03   p_cons 5.573200e-01   p_joint 1.580000e-03

Joint ci ratio: 4.018617e-01	ci left: 1.266206e-03	ci right 1.916867e-03	k: 94	n:60000
Cons ci ratio: 1.424954e-02	ci left: 5.537817e-01	ci right 5.617461e-01	k: 33466	n:60000
KS ci ratio: 4.018617e-01	ci left: 1.266206e-03	ci right 1.916867e-03	k: 94	n:60000
SLC13A2   60000 perm   13 sec   (4584 perm/sec)   p_kst 1.566667e-03   p_cons 5.577667e-01   p_joint 1.566667e-03

Joint ci ratio: 3.734609e-01	ci left: 1.278745e-03	ci right 1.878076e-03	k: 109	n:70000
Cons ci ratio: 1.317982e-02	ci left: 5.545546e-01	ci right 5.619263e-01	k: 39077	n:70000
KS ci ratio: 3.734609e-01	ci left: 1.278745e-03	ci right 1.878076e-03	k: 109	n:70000
SLC13A2   70000 perm   16 sec   (4476 perm/sec)   p_kst 1.557143e-03   p_cons 5.582429e-01   p_joint 1.557143e-03

Joint ci ratio: 3.448562e-01	ci left: 1.335010e-03	ci right 1.902117e-03	k: 128	n:80000
Cons ci ratio: 1.261566e-02	ci left: 5.434051e-01	ci right 5.503165e-01	k: 43749	n:80000
KS ci ratio: 3.448562e-01	ci left: 1.335010e-03	ci right 1.902117e-03	k: 128	n:80000
SLC13A2   80000 perm   18 sec   (4378 perm/sec)   p_kst 1.600000e-03   p_cons 5.468625e-01   p_joint 1.600000e-03

Joint ci ratio: 3.298630e-01	ci left: 1.308716e-03	ci right 1.835359e-03	k: 140	n:90000
Cons ci ratio: 1.189674e-02	ci left: 5.434962e-01	ci right 5.500119e-01	k: 49208	n:90000
KS ci ratio: 3.298630e-01	ci left: 1.308716e-03	ci right 1.835359e-03	k: 140	n:90000
SLC13A2   90000 perm   21 sec   (4288 perm/sec)   p_kst 1.555556e-03   p_cons 5.467556e-01   p_joint 1.555556e-03

Joint ci ratio: 3.106274e-01	ci left: 1.343393e-03	ci right 1.846227e-03	k: 158	n:100000
Cons ci ratio: 1.130325e-02	ci left: 5.429179e-01	ci right 5.490995e-01	k: 54601	n:100000
KS ci ratio: 3.106274e-01	ci left: 1.343393e-03	ci right 1.846227e-03	k: 158	n:100000
SLC13A2   100000 perm   24 sec   (4202 perm/sec)   p_kst 1.580000e-03   p_cons 5.460100e-01   p_joint 1.580000e-03

Joint ci ratio: 3.013054e-01	ci left: 1.305193e-03	ci right 1.776261e-03	k: 168	n:110000
Cons ci ratio: 1.077686e-02	ci left: 5.430793e-01	ci right 5.489728e-01	k: 60063	n:110000
KS ci ratio: 3.013054e-01	ci left: 1.305193e-03	ci right 1.776261e-03	k: 168	n:110000
SLC13A2   110000 perm   27 sec   (4113 perm/sec)   p_kst 1.527273e-03   p_cons 5.460273e-01   p_joint 1.527273e-03

Joint ci ratio: 2.911503e-01	ci left: 1.288997e-03	ci right 1.735650e-03	k: 180	n:120000
Cons ci ratio: 1.031413e-02	ci left: 5.433946e-01	ci right 5.490365e-01	k: 65546	n:120000
KS ci ratio: 2.911503e-01	ci left: 1.288997e-03	ci right 1.735650e-03	k: 180	n:120000
SLC13A2   120000 perm   30 sec   (4035 perm/sec)   p_kst 1.500000e-03   p_cons 5.462167e-01   p_joint 1.500000e-03

Joint ci ratio: 2.812284e-01	ci left: 1.282667e-03	ci right 1.709297e-03	k: 193	n:130000
Cons ci ratio: 9.900151e-03	ci left: 5.439736e-01	ci right 5.493935e-01	k: 71069	n:130000
KS ci ratio: 2.812284e-01	ci left: 1.282667e-03	ci right 1.709297e-03	k: 193	n:130000
SLC13A2   130000 perm   33 sec   (3960 perm/sec)   p_kst 1.484615e-03   p_cons 5.466846e-01   p_joint 1.484615e-03

Joint ci ratio: 2.729174e-01	ci left: 1.270807e-03	ci right 1.678860e-03	k: 205	n:140000
Cons ci ratio: 9.532588e-03	ci left: 5.444594e-01	ci right 5.496815e-01	k: 76590	n:140000
KS ci ratio: 2.729174e-01	ci left: 1.270807e-03	ci right 1.678860e-03	k: 205	n:140000
SLC13A2   140000 perm   36 sec   (3881 perm/sec)   p_kst 1.464286e-03   p_cons 5.470714e-01   p_joint 1.464286e-03

Joint ci ratio: 2.671492e-01	ci left: 1.242022e-03	ci right 1.630992e-03	k: 214	n:150000
Cons ci ratio: 9.211556e-03	ci left: 5.444300e-01	ci right 5.494749e-01	k: 82043	n:150000
KS ci ratio: 2.671492e-01	ci left: 1.242022e-03	ci right 1.630992e-03	k: 214	n:150000
SLC13A2   150000 perm   39 sec   (3809 perm/sec)   p_kst 1.426667e-03   p_cons 5.469533e-01   p_joint 1.426667e-03

Joint ci ratio: 2.571732e-01	ci left: 1.263668e-03	ci right 1.642267e-03	k: 231	n:160000
Cons ci ratio: 8.718808e-03	ci left: 5.557438e-01	ci right 5.606166e-01	k: 89309	n:160000
KS ci ratio: 2.571732e-01	ci left: 1.263668e-03	ci right 1.642267e-03	k: 231	n:160000
SLC13A2   160000 perm   43 sec   (3741 perm/sec)   p_kst 1.443750e-03   p_cons 5.581812e-01   p_joint 1.443750e-03

Joint ci ratio: 2.482372e-01	ci left: 1.283005e-03	ci right 1.651980e-03	k: 248	n:170000
Cons ci ratio: 8.461296e-03	ci left: 5.556530e-01	ci right 5.603803e-01	k: 94863	n:170000
KS ci ratio: 2.482372e-01	ci left: 1.283005e-03	ci right 1.651980e-03	k: 248	n:170000
SLC13A2   170000 perm   46 sec   (3681 perm/sec)   p_kst 1.458824e-03   p_cons 5.580176e-01   p_joint 1.458824e-03

Joint ci ratio: 2.434010e-01	ci left: 1.263859e-03	ci right 1.619176e-03	k: 258	n:180000
Cons ci ratio: 8.222643e-03	ci left: 5.557354e-01	ci right 5.603294e-01	k: 100446	n:180000
KS ci ratio: 2.434010e-01	ci left: 1.263859e-03	ci right 1.619176e-03	k: 258	n:180000
SLC13A2   180000 perm   50 sec   (3623 perm/sec)   p_kst 1.433333e-03   p_cons 5.580333e-01   p_joint 1.433333e-03

Joint ci ratio: 2.379525e-01	ci left: 1.256689e-03	ci right 1.600917e-03	k: 270	n:190000
Cons ci ratio: 7.999693e-03	ci left: 5.560215e-01	ci right 5.604925e-01	k: 106069	n:190000
KS ci ratio: 2.379525e-01	ci left: 1.256689e-03	ci right 1.600917e-03	k: 270	n:190000
SLC13A2   190000 perm   53 sec   (3567 perm/sec)   p_kst 1.421053e-03   p_cons 5.582579e-01   p_joint 1.421053e-03

Joint ci ratio: 2.300228e-01	ci left: 1.283289e-03	ci right 1.621426e-03	k: 289	n:200000
Cons ci ratio: 7.800743e-03	ci left: 5.558502e-01	ci right 5.602081e-01	k: 111606	n:200000
KS ci ratio: 2.300228e-01	ci left: 1.283289e-03	ci right 1.621426e-03	k: 289	n:200000
SLC13A2   200000 perm   57 sec   (3508 perm/sec)   p_kst 1.445000e-03   p_cons 5.580300e-01   p_joint 1.445000e-03

Joint ci ratio: 2.239276e-01	ci left: 1.294040e-03	ci right 1.624729e-03	k: 305	n:210000
Cons ci ratio: 7.617401e-03	ci left: 5.556012e-01	ci right 5.598543e-01	k: 117123	n:210000
KS ci ratio: 2.239276e-01	ci left: 1.294040e-03	ci right 1.624729e-03	k: 305	n:210000
SLC13A2   210000 perm   61 sec   (3458 perm/sec)   p_kst 1.452381e-03   p_cons 5.577286e-01   p_joint 1.452381e-03

Joint ci ratio: 2.172813e-01	ci left: 1.316814e-03	ci right 1.642003e-03	k: 324	n:220000
Cons ci ratio: 7.449489e-03	ci left: 5.551714e-01	ci right 5.593271e-01	k: 122595	n:220000
KS ci ratio: 2.172813e-01	ci left: 1.316814e-03	ci right 1.642003e-03	k: 324	n:220000
SLC13A2   220000 perm   65 sec   (3410 perm/sec)   p_kst 1.472727e-03   p_cons 5.572500e-01   p_joint 1.472727e-03

Joint ci ratio: 2.093729e-01	ci left: 1.362455e-03	ci right 1.685099e-03	k: 349	n:230000
Cons ci ratio: 7.287640e-03	ci left: 5.550888e-01	ci right 5.591532e-01	k: 128138	n:230000
KS ci ratio: 2.093729e-01	ci left: 1.362455e-03	ci right 1.685099e-03	k: 349	n:230000
SLC13A2   230000 perm   68 sec   (3361 perm/sec)   p_kst 1.517391e-03   p_cons 5.571217e-01   p_joint 1.517391e-03

Joint ci ratio: 2.044654e-01	ci left: 1.372850e-03	ci right 1.689384e-03	k: 366	n:240000
Cons ci ratio: 7.134575e-03	ci left: 5.551058e-01	ci right 5.590845e-01	k: 133703	n:240000
KS ci ratio: 2.044654e-01	ci left: 1.372850e-03	ci right 1.689384e-03	k: 366	n:240000
SLC13A2   240000 perm   72 sec   (3313 perm/sec)   p_kst 1.525000e-03   p_cons 5.570958e-01   p_joint 1.525000e-03

Joint ci ratio: 2.020061e-01	ci left: 1.352103e-03	ci right 1.659640e-03	k: 375	n:250000
Cons ci ratio: 6.998135e-03	ci left: 5.546020e-01	ci right 5.585007e-01	k: 139138	n:250000
KS ci ratio: 2.020061e-01	ci left: 1.352103e-03	ci right 1.659640e-03	k: 375	n:250000
SLC13A2   250000 perm   77 sec   (3267 perm/sec)   p_kst 1.500000e-03   p_cons 5.565520e-01   p_joint 1.500000e-03

Joint ci ratio: 1.973367e-01	ci left: 1.365870e-03	ci right 1.668494e-03	k: 393	n:260000
Cons ci ratio: 6.861838e-03	ci left: 5.546687e-01	ci right 5.584916e-01	k: 144711	n:260000
KS ci ratio: 1.973367e-01	ci left: 1.365870e-03	ci right 1.668494e-03	k: 393	n:260000
SLC13A2   260000 perm   81 sec   (3222 perm/sec)   p_kst 1.511538e-03   p_cons 5.565808e-01   p_joint 1.511538e-03

Joint ci ratio: 1.943996e-01	ci left: 1.357546e-03	ci right 1.653320e-03	k: 405	n:270000
Cons ci ratio: 6.734772e-03	ci left: 5.546162e-01	ci right 5.583677e-01	k: 150253	n:270000
KS ci ratio: 1.943996e-01	ci left: 1.357546e-03	ci right 1.653320e-03	k: 405	n:270000
SLC13A2   270000 perm   85 sec   (3179 perm/sec)   p_kst 1.500000e-03   p_cons 5.564926e-01   p_joint 1.500000e-03

Joint ci ratio: 1.918199e-01	ci left: 1.346448e-03	ci right 1.635457e-03	k: 416	n:280000
Cons ci ratio: 6.611642e-03	ci left: 5.547826e-01	ci right 5.584663e-01	k: 155855	n:280000
KS ci ratio: 1.918199e-01	ci left: 1.346448e-03	ci right 1.635457e-03	k: 416	n:280000
SLC13A2   280000 perm   89 sec   (3135 perm/sec)   p_kst 1.485714e-03   p_cons 5.566250e-01   p_joint 1.485714e-03

Joint ci ratio: 1.869494e-01	ci left: 1.372286e-03	ci right 1.658514e-03	k: 438	n:290000
Cons ci ratio: 6.505288e-03	ci left: 5.541583e-01	ci right 5.577785e-01	k: 161231	n:290000
KS ci ratio: 1.869494e-01	ci left: 1.372286e-03	ci right 1.658514e-03	k: 438	n:290000
SLC13A2   290000 perm   94 sec   (3093 perm/sec)   p_kst 1.510345e-03   p_cons 5.559690e-01   p_joint 1.510345e-03

Joint ci ratio: 1.824320e-01	ci left: 1.396488e-03	ci right 1.679947e-03	k: 460	n:300000
Cons ci ratio: 6.397317e-03	ci left: 5.540831e-01	ci right 5.576424e-01	k: 166759	n:300000
KS ci ratio: 1.824320e-01	ci left: 1.396488e-03	ci right 1.679947e-03	k: 460	n:300000
SLC13A2   300000 perm   98 sec   (3052 perm/sec)   p_kst 1.533333e-03   p_cons 5.558633e-01   p_joint 1.533333e-03

Joint ci ratio: 1.801039e-01	ci left: 1.388393e-03	ci right 1.666221e-03	k: 472	n:310000
Cons ci ratio: 6.292329e-03	ci left: 5.541875e-01	ci right 5.576888e-01	k: 172341	n:310000
KS ci ratio: 1.801039e-01	ci left: 1.388393e-03	ci right 1.666221e-03	k: 472	n:310000
SLC13A2   310000 perm   103 sec   (3011 perm/sec)   p_kst 1.522581e-03   p_cons 5.559387e-01   p_joint 1.522581e-03

Joint ci ratio: 1.769516e-01	ci left: 1.395757e-03	ci right 1.669647e-03	k: 489	n:320000
Cons ci ratio: 6.193992e-03	ci left: 5.541545e-01	ci right 5.576007e-01	k: 177881	n:320000
KS ci ratio: 1.769516e-01	ci left: 1.395757e-03	ci right 1.669647e-03	k: 489	n:320000
SLC13A2   320000 perm   108 sec   (2972 perm/sec)   p_kst 1.528125e-03   p_cons 5.558781e-01   p_joint 1.528125e-03

Joint ci ratio: 1.746506e-01	ci left: 1.391122e-03	ci right 1.660178e-03	k: 502	n:330000
Cons ci ratio: 6.098553e-03	ci left: 5.542513e-01	ci right 5.576447e-01	k: 183463	n:330000
KS ci ratio: 1.746506e-01	ci left: 1.391122e-03	ci right 1.660178e-03	k: 502	n:330000
SLC13A2   330000 perm   113 sec   (2932 perm/sec)   p_kst 1.521212e-03   p_cons 5.559485e-01   p_joint 1.521212e-03

Joint ci ratio: 1.716064e-01	ci left: 1.400854e-03	ci right 1.666581e-03	k: 520	n:340000
Cons ci ratio: 6.006035e-03	ci left: 5.544545e-01	ci right 5.577975e-01	k: 189083	n:340000
KS ci ratio: 1.716064e-01	ci left: 1.400854e-03	ci right 1.666581e-03	k: 520	n:340000
SLC13A2   340000 perm   117 sec   (2894 perm/sec)   p_kst 1.529412e-03   p_cons 5.561265e-01   p_joint 1.529412e-03

Joint ci ratio: 1.684034e-01	ci left: 1.415542e-03	ci right 1.678535e-03	k: 540	n:350000
Cons ci ratio: 5.919588e-03	ci left: 5.544807e-01	ci right 5.577755e-01	k: 194645	n:350000
KS ci ratio: 1.684034e-01	ci left: 1.415542e-03	ci right 1.678535e-03	k: 540	n:350000
SLC13A2   350000 perm   123 sec   (2857 perm/sec)   p_kst 1.542857e-03   p_cons 5.561286e-01   p_joint 1.542857e-03

Joint ci ratio: 1.664164e-01	ci left: 1.410820e-03	ci right 1.669532e-03	k: 553	n:360000
Cons ci ratio: 5.837623e-03	ci left: 5.544335e-01	ci right 5.576823e-01	k: 200181	n:360000
KS ci ratio: 1.664164e-01	ci left: 1.410820e-03	ci right 1.669532e-03	k: 553	n:360000
SLC13A2   360000 perm   128 sec   (2823 perm/sec)   p_kst 1.536111e-03   p_cons 5.560583e-01   p_joint 1.536111e-03

Joint ci ratio: 1.646436e-01	ci left: 1.403778e-03	ci right 1.658185e-03	k: 565	n:370000
Cons ci ratio: 5.755977e-03	ci left: 5.546460e-01	ci right 5.578504e-01	k: 205812	n:370000
KS ci ratio: 1.646436e-01	ci left: 1.403778e-03	ci right 1.658185e-03	k: 565	n:370000
SLC13A2   370000 perm   133 sec   (2789 perm/sec)   p_kst 1.527027e-03   p_cons 5.562486e-01   p_joint 1.527027e-03

Joint ci ratio: 1.627853e-01	ci left: 1.399645e-03	ci right 1.650160e-03	k: 578	n:380000
Cons ci ratio: 5.678722e-03	ci left: 5.547555e-01	ci right 5.579173e-01	k: 211408	n:380000
KS ci ratio: 1.627853e-01	ci left: 1.399645e-03	ci right 1.650160e-03	k: 578	n:380000
SLC13A2   380000 perm   138 sec   (2755 perm/sec)   p_kst 1.521053e-03   p_cons 5.563368e-01   p_joint 1.521053e-03

Joint ci ratio: 1.603119e-01	ci left: 1.408045e-03	ci right 1.655866e-03	k: 596	n:390000
Cons ci ratio: 5.601963e-03	ci left: 5.550828e-01	ci right 5.582036e-01	k: 217091	n:390000
KS ci ratio: 1.603119e-01	ci left: 1.408045e-03	ci right 1.655866e-03	k: 596	n:390000
SLC13A2   390000 perm   143 sec   (2722 perm/sec)   p_kst 1.528205e-03   p_cons 5.566436e-01   p_joint 1.528205e-03

Joint ci ratio: 1.583351e-01	ci left: 1.408849e-03	ci right 1.653463e-03	k: 611	n:400000
Cons ci ratio: 5.532797e-03	ci left: 5.549863e-01	ci right 5.580679e-01	k: 222611	n:400000
KS ci ratio: 1.583351e-01	ci left: 1.408849e-03	ci right 1.653463e-03	k: 611	n:400000
SLC13A2   400000 perm   149 sec   (2688 perm/sec)   p_kst 1.527500e-03   p_cons 5.565275e-01   p_joint 1.527500e-03

Joint ci ratio: 1.560563e-01	ci left: 1.416663e-03	ci right 1.658762e-03	k: 629	n:410000
Cons ci ratio: 5.464942e-03	ci left: 5.550021e-01	ci right 5.580459e-01	k: 228175	n:410000
KS ci ratio: 1.560563e-01	ci left: 1.416663e-03	ci right 1.658762e-03	k: 629	n:410000
SLC13A2   410000 perm   154 sec   (2656 perm/sec)   p_kst 1.534146e-03   p_cons 5.565244e-01   p_joint 1.534146e-03

Joint ci ratio: 1.541115e-01	ci left: 1.419550e-03	ci right 1.658840e-03	k: 645	n:420000
Cons ci ratio: 5.399081e-03	ci left: 5.550579e-01	ci right 5.580651e-01	k: 233756	n:420000
KS ci ratio: 1.541115e-01	ci left: 1.419550e-03	ci right 1.658840e-03	k: 645	n:420000
SLC13A2   420000 perm   160 sec   (2623 perm/sec)   p_kst 1.535714e-03   p_cons 5.565619e-01   p_joint 1.535714e-03

Joint ci ratio: 1.529333e-01	ci left: 1.408899e-03	ci right 1.644412e-03	k: 655	n:430000
Cons ci ratio: 5.336099e-03	ci left: 5.550601e-01	ci right 5.580322e-01	k: 239315	n:430000
KS ci ratio: 1.529333e-01	ci left: 1.408899e-03	ci right 1.644412e-03	k: 655	n:430000
SLC13A2   430000 perm   166 sec   (2593 perm/sec)   p_kst 1.523256e-03   p_cons 5.565465e-01   p_joint 1.523256e-03

Joint ci ratio: 1.514405e-01	ci left: 1.405298e-03	ci right 1.637709e-03	k: 668	n:440000
Cons ci ratio: 5.275635e-03	ci left: 5.550283e-01	ci right 5.579664e-01	k: 244859	n:440000
KS ci ratio: 1.514405e-01	ci left: 1.405298e-03	ci right 1.637709e-03	k: 668	n:440000
SLC13A2   440000 perm   172 sec   (2564 perm/sec)   p_kst 1.518182e-03   p_cons 5.564977e-01   p_joint 1.518182e-03

Joint ci ratio: 1.497708e-01	ci left: 1.406147e-03	ci right 1.635904e-03	k: 683	n:450000
Cons ci ratio: 5.217885e-03	ci left: 5.549314e-01	ci right 5.578367e-01	k: 250373	n:450000
KS ci ratio: 1.497708e-01	ci left: 1.406147e-03	ci right 1.635904e-03	k: 683	n:450000
SLC13A2   450000 perm   178 sec   (2533 perm/sec)   p_kst 1.517778e-03   p_cons 5.563844e-01   p_joint 1.517778e-03

Joint ci ratio: 1.482614e-01	ci left: 1.404878e-03	ci right 1.631909e-03	k: 697	n:460000
Cons ci ratio: 5.161422e-03	ci left: 5.548933e-01	ci right 5.577669e-01	k: 255912	n:460000
KS ci ratio: 1.482614e-01	ci left: 1.404878e-03	ci right 1.631909e-03	k: 697	n:460000
SLC13A2   460000 perm   184 sec   (2502 perm/sec)   p_kst 1.515217e-03   p_cons 5.563304e-01   p_joint 1.515217e-03

Joint ci ratio: 1.461812e-01	ci left: 1.415974e-03	ci right 1.641307e-03	k: 717	n:470000
Cons ci ratio: 5.104069e-03	ci left: 5.551166e-01	ci right 5.579593e-01	k: 261573	n:470000
KS ci ratio: 1.461812e-01	ci left: 1.415974e-03	ci right 1.641307e-03	k: 717	n:470000
SLC13A2   470000 perm   190 sec   (2473 perm/sec)   p_kst 1.525532e-03   p_cons 5.565383e-01   p_joint 1.525532e-03

Joint ci ratio: 1.446778e-01	ci left: 1.416587e-03	ci right 1.639499e-03	k: 732	n:480000
Cons ci ratio: 5.052165e-03	ci left: 5.549807e-01	ci right 5.577937e-01	k: 267066	n:480000
KS ci ratio: 1.446778e-01	ci left: 1.416587e-03	ci right 1.639499e-03	k: 732	n:480000
SLC13A2   480000 perm   196 sec   (2445 perm/sec)   p_kst 1.525000e-03   p_cons 5.563875e-01   p_joint 1.525000e-03

Joint ci ratio: 1.436049e-01	ci left: 1.409316e-03	ci right 1.629299e-03	k: 743	n:490000
Cons ci ratio: 4.999393e-03	ci left: 5.550893e-01	ci right 5.578733e-01	k: 272676	n:490000
KS ci ratio: 1.436049e-01	ci left: 1.409316e-03	ci right 1.629299e-03	k: 743	n:490000
SLC13A2   490000 perm   203 sec   (2419 perm/sec)   p_kst 1.516327e-03   p_cons 5.564816e-01   p_joint 1.516327e-03

Joint ci ratio: 1.416193e-01	ci left: 1.421632e-03	ci right 1.640209e-03	k: 764	n:500000
Cons ci ratio: 4.948081e-03	ci left: 5.552097e-01	ci right 5.579657e-01	k: 278294	n:500000
KS ci ratio: 1.416193e-01	ci left: 1.421632e-03	ci right 1.640209e-03	k: 764	n:500000
SLC13A2   500000 perm   209 sec   (2395 perm/sec)   p_kst 1.528000e-03   p_cons 5.565880e-01   p_joint 1.528000e-03

Joint ci ratio: 1.407034e-01	ci left: 1.412672e-03	ci right 1.628349e-03	k: 774	n:510000
Cons ci ratio: 4.899133e-03	ci left: 5.552431e-01	ci right 5.579719e-01	k: 283870	n:510000
KS ci ratio: 1.407034e-01	ci left: 1.412672e-03	ci right 1.628349e-03	k: 774	n:510000
SLC13A2   510000 perm   215 sec   (2370 perm/sec)   p_kst 1.517647e-03   p_cons 5.566078e-01   p_joint 1.517647e-03

Joint ci ratio: 1.390970e-01	ci left: 1.418909e-03	ci right 1.632860e-03	k: 792	n:520000
Cons ci ratio: 4.853349e-03	ci left: 5.550984e-01	ci right 5.578009e-01	k: 289354	n:520000
KS ci ratio: 1.390970e-01	ci left: 1.418909e-03	ci right 1.632860e-03	k: 792	n:520000
SLC13A2   520000 perm   222 sec   (2345 perm/sec)   p_kst 1.523077e-03   p_cons 5.564500e-01   p_joint 1.523077e-03

Joint ci ratio: 1.381427e-01	ci left: 1.412172e-03	ci right 1.623526e-03	k: 803	n:530000
Cons ci ratio: 4.809211e-03	ci left: 5.549197e-01	ci right 5.575967e-01	k: 294817	n:530000
KS ci ratio: 1.381427e-01	ci left: 1.412172e-03	ci right 1.623526e-03	k: 803	n:530000
SLC13A2   530000 perm   228 sec   (2322 perm/sec)   p_kst 1.515094e-03   p_cons 5.562585e-01   p_joint 1.515094e-03

Joint ci ratio: 1.367882e-01	ci left: 1.414631e-03	ci right 1.624109e-03	k: 819	n:540000
Cons ci ratio: 4.765431e-03	ci left: 5.548329e-01	ci right 5.574850e-01	k: 300326	n:540000
KS ci ratio: 1.367882e-01	ci left: 1.414631e-03	ci right 1.624109e-03	k: 819	n:540000
SLC13A2   540000 perm   235 sec   (2299 perm/sec)   p_kst 1.516667e-03   p_cons 5.561593e-01   p_joint 1.516667e-03

Joint ci ratio: 1.353918e-01	ci left: 1.418767e-03	ci right 1.626540e-03	k: 836	n:550000
Cons ci ratio: 4.721399e-03	ci left: 5.548985e-01	ci right 5.575264e-01	k: 305917	n:550000
KS ci ratio: 1.353918e-01	ci left: 1.418767e-03	ci right 1.626540e-03	k: 836	n:550000
SLC13A2   550000 perm   242 sec   (2276 perm/sec)   p_kst 1.520000e-03   p_cons 5.562127e-01   p_joint 1.520000e-03

Joint ci ratio: 1.345908e-01	ci left: 1.410686e-03	ci right 1.615955e-03	k: 846	n:560000
Cons ci ratio: 4.678193e-03	ci left: 5.550012e-01	ci right 5.576054e-01	k: 311530	n:560000
KS ci ratio: 1.345908e-01	ci left: 1.410686e-03	ci right 1.615955e-03	k: 846	n:560000
SLC13A2   560000 perm   248 sec   (2255 perm/sec)   p_kst 1.510714e-03   p_cons 5.563036e-01   p_joint 1.510714e-03

Joint ci ratio: 1.333372e-01	ci left: 1.413067e-03	ci right 1.616615e-03	k: 862	n:570000
Cons ci ratio: 4.637404e-03	ci left: 5.549670e-01	ci right 5.575483e-01	k: 317067	n:570000
KS ci ratio: 1.333372e-01	ci left: 1.413067e-03	ci right 1.616615e-03	k: 862	n:570000
SLC13A2   570000 perm   255 sec   (2233 perm/sec)   p_kst 1.512281e-03   p_cons 5.562579e-01   p_joint 1.512281e-03

Joint ci ratio: 1.322688e-01	ci left: 1.412039e-03	ci right 1.613682e-03	k: 876	n:580000
Cons ci ratio: 4.595624e-03	ci left: 5.551531e-01	ci right 5.577119e-01	k: 322731	n:580000
KS ci ratio: 1.322688e-01	ci left: 1.412039e-03	ci right 1.613682e-03	k: 876	n:580000
SLC13A2   580000 perm   262 sec   (2211 perm/sec)   p_kst 1.510345e-03   p_cons 5.564328e-01   p_joint 1.510345e-03

Joint ci ratio: 1.308584e-01	ci left: 1.419250e-03	ci right 1.619594e-03	k: 895	n:590000
Cons ci ratio: 4.556533e-03	ci left: 5.551617e-01	ci right 5.576988e-01	k: 328294	n:590000
KS ci ratio: 1.308584e-01	ci left: 1.419250e-03	ci right 1.619594e-03	k: 895	n:590000
SLC13A2   590000 perm   270 sec   (2189 perm/sec)   p_kst 1.516949e-03   p_cons 5.564305e-01   p_joint 1.516949e-03

Joint ci ratio: 1.292097e-01	ci left: 1.432683e-03	ci right 1.632179e-03	k: 918	n:600000
Cons ci ratio: 4.518224e-03	ci left: 5.551918e-01	ci right 5.577076e-01	k: 333870	n:600000
KS ci ratio: 1.292097e-01	ci left: 1.432683e-03	ci right 1.632179e-03	k: 918	n:600000
SLC13A2   600000 perm   277 sec   (2169 perm/sec)   p_kst 1.530000e-03   p_cons 5.564500e-01   p_joint 1.530000e-03

Joint ci ratio: 1.277576e-01	ci left: 1.442517e-03	ci right 1.640954e-03	k: 939	n:610000
Cons ci ratio: 4.481550e-03	ci left: 5.551456e-01	ci right 5.576407e-01	k: 339400	n:610000
KS ci ratio: 1.277576e-01	ci left: 1.442517e-03	ci right 1.640954e-03	k: 939	n:610000
SLC13A2   610000 perm   284 sec   (2149 perm/sec)   p_kst 1.539344e-03   p_cons 5.563934e-01   p_joint 1.539344e-03

Joint ci ratio: 1.266840e-01	ci left: 1.444236e-03	ci right 1.641114e-03	k: 955	n:620000
Cons ci ratio: 4.445624e-03	ci left: 5.551155e-01	ci right 5.575904e-01	k: 344939	n:620000
KS ci ratio: 1.266840e-01	ci left: 1.444236e-03	ci right 1.641114e-03	k: 955	n:620000
SLC13A2   620000 perm   291 sec   (2129 perm/sec)   p_kst 1.540323e-03   p_cons 5.563532e-01   p_joint 1.540323e-03

Joint ci ratio: 1.257666e-01	ci left: 1.442832e-03	ci right 1.637988e-03	k: 969	n:630000
Cons ci ratio: 4.409768e-03	ci left: 5.551738e-01	ci right 5.576289e-01	k: 350533	n:630000
KS ci ratio: 1.257666e-01	ci left: 1.442832e-03	ci right 1.637988e-03	k: 969	n:630000
SLC13A2   630000 perm   299 sec   (2109 perm/sec)   p_kst 1.538095e-03   p_cons 5.564016e-01   p_joint 1.538095e-03

Joint ci ratio: 1.250599e-01	ci left: 1.436935e-03	ci right 1.630122e-03	k: 980	n:640000
Cons ci ratio: 4.374766e-03	ci left: 5.552303e-01	ci right 5.576661e-01	k: 356127	n:640000
KS ci ratio: 1.250599e-01	ci left: 1.436935e-03	ci right 1.630122e-03	k: 980	n:640000
SLC13A2   640000 perm   306 sec   (2090 perm/sec)   p_kst 1.531250e-03   p_cons 5.564484e-01   p_joint 1.531250e-03

Joint ci ratio: 1.236801e-01	ci left: 1.447622e-03	ci right 1.639941e-03	k: 1002	n:650000
Cons ci ratio: 4.341206e-03	ci left: 5.552143e-01	ci right 5.576313e-01	k: 361675	n:650000
KS ci ratio: 1.236801e-01	ci left: 1.447622e-03	ci right 1.639941e-03	k: 1002	n:650000
SLC13A2   650000 perm   314 sec   (2071 perm/sec)   p_kst 1.541538e-03   p_cons 5.564231e-01   p_joint 1.541538e-03

Joint ci ratio: 1.229472e-01	ci left: 1.443310e-03	ci right 1.633836e-03	k: 1014	n:660000
Cons ci ratio: 4.307310e-03	ci left: 5.553247e-01	ci right 5.577233e-01	k: 367306	n:660000
KS ci ratio: 1.229472e-01	ci left: 1.443310e-03	ci right 1.633836e-03	k: 1014	n:660000
SLC13A2   660000 perm   322 sec   (2052 perm/sec)   p_kst 1.536364e-03   p_cons 5.565242e-01   p_joint 1.536364e-03

Joint ci ratio: 1.222867e-01	ci left: 1.437682e-03	ci right 1.626372e-03	k: 1025	n:670000
Cons ci ratio: 4.274790e-03	ci left: 5.553632e-01	ci right 5.577438e-01	k: 372891	n:670000
KS ci ratio: 1.222867e-01	ci left: 1.437682e-03	ci right 1.626372e-03	k: 1025	n:670000
SLC13A2   670000 perm   329 sec   (2034 perm/sec)   p_kst 1.529851e-03   p_cons 5.565537e-01   p_joint 1.529851e-03

Joint ci ratio: 1.214610e-01	ci left: 1.436500e-03	ci right 1.623670e-03	k: 1039	n:680000
Cons ci ratio: 4.243312e-03	ci left: 5.553638e-01	ci right 5.577269e-01	k: 378451	n:680000
KS ci ratio: 1.214610e-01	ci left: 1.436500e-03	ci right 1.623670e-03	k: 1039	n:680000
SLC13A2   680000 perm   337 sec   (2017 perm/sec)   p_kst 1.527941e-03   p_cons 5.565456e-01   p_joint 1.527941e-03

Joint ci ratio: 1.206517e-01	ci left: 1.435356e-03	ci right 1.621043e-03	k: 1053	n:690000
Cons ci ratio: 4.212011e-03	ci left: 5.554240e-01	ci right 5.577698e-01	k: 384052	n:690000
KS ci ratio: 1.206517e-01	ci left: 1.435356e-03	ci right 1.621043e-03	k: 1053	n:690000
SLC13A2   690000 perm   345 sec   (1999 perm/sec)   p_kst 1.526087e-03   p_cons 5.565971e-01   p_joint 1.526087e-03

Joint ci ratio: 1.193558e-01	ci left: 1.446723e-03	ci right 1.631727e-03	k: 1076	n:700000
Cons ci ratio: 4.180583e-03	ci left: 5.555782e-01	ci right 5.579071e-01	k: 389720	n:700000
KS ci ratio: 1.193558e-01	ci left: 1.446723e-03	ci right 1.631727e-03	k: 1076	n:700000
SLC13A2   700000 perm   353 sec   (1982 perm/sec)   p_kst 1.537143e-03   p_cons 5.567429e-01   p_joint 1.537143e-03

Joint ci ratio: 1.184789e-01	ci left: 1.448211e-03	ci right 1.631951e-03	k: 1092	n:710000
Cons ci ratio: 4.150107e-03	ci left: 5.556971e-01	ci right 5.580095e-01	k: 395366	n:710000
KS ci ratio: 1.184789e-01	ci left: 1.448211e-03	ci right 1.631951e-03	k: 1092	n:710000
SLC13A2   710000 perm   361 sec   (1966 perm/sec)   p_kst 1.538028e-03   p_cons 5.568535e-01   p_joint 1.538028e-03

Joint ci ratio: 1.177275e-01	ci left: 1.446967e-03	ci right 1.629303e-03	k: 1106	n:720000
Cons ci ratio: 4.120844e-03	ci left: 5.557461e-01	ci right 5.580423e-01	k: 400964	n:720000
KS ci ratio: 1.177275e-01	ci left: 1.446967e-03	ci right 1.629303e-03	k: 1106	n:720000
SLC13A2   720000 perm   369 sec   (1950 perm/sec)   p_kst 1.536111e-03   p_cons 5.568944e-01   p_joint 1.536111e-03

Joint ci ratio: 1.168337e-01	ci left: 1.449750e-03	ci right 1.630954e-03	k: 1123	n:730000
Cons ci ratio: 4.093464e-03	ci left: 5.556404e-01	ci right 5.579208e-01	k: 406450	n:730000
KS ci ratio: 1.168337e-01	ci left: 1.449750e-03	ci right 1.630954e-03	k: 1123	n:730000
SLC13A2   730000 perm   378 sec   (1933 perm/sec)   p_kst 1.538356e-03   p_cons 5.567808e-01   p_joint 1.538356e-03

Joint ci ratio: 1.163178e-01	ci left: 1.443278e-03	ci right 1.622822e-03	k: 1133	n:740000
Cons ci ratio: 4.066077e-03	ci left: 5.556037e-01	ci right 5.578688e-01	k: 411985	n:740000
KS ci ratio: 1.163178e-01	ci left: 1.443278e-03	ci right 1.622822e-03	k: 1133	n:740000
SLC13A2   740000 perm   386 sec   (1916 perm/sec)   p_kst 1.531081e-03   p_cons 5.567365e-01   p_joint 1.531081e-03

Joint ci ratio: 1.155561e-01	ci left: 1.443455e-03	ci right 1.621764e-03	k: 1148	n:750000
Cons ci ratio: 4.038370e-03	ci left: 5.556735e-01	ci right 5.579234e-01	k: 417599	n:750000
KS ci ratio: 1.155561e-01	ci left: 1.443455e-03	ci right 1.621764e-03	k: 1148	n:750000
SLC13A2   750000 perm   395 sec   (1901 perm/sec)   p_kst 1.530667e-03   p_cons 5.567987e-01   p_joint 1.530667e-03

Joint ci ratio: 1.145139e-01	ci left: 1.451299e-03	ci right 1.628851e-03	k: 1169	n:760000
Cons ci ratio: 4.012441e-03	ci left: 5.555915e-01	ci right 5.578265e-01	k: 423099	n:760000
KS ci ratio: 1.145139e-01	ci left: 1.451299e-03	ci right 1.628851e-03	k: 1169	n:760000
SLC13A2   760000 perm   403 sec   (1884 perm/sec)   p_kst 1.538158e-03   p_cons 5.567092e-01   p_joint 1.538158e-03

Joint ci ratio: 1.136429e-01	ci left: 1.455160e-03	ci right 1.631741e-03	k: 1187	n:770000
Cons ci ratio: 3.987257e-03	ci left: 5.554804e-01	ci right 5.577010e-01	k: 428575	n:770000
KS ci ratio: 1.136429e-01	ci left: 1.455160e-03	ci right 1.631741e-03	k: 1187	n:770000
SLC13A2   770000 perm   412 sec   (1869 perm/sec)   p_kst 1.541558e-03   p_cons 5.565909e-01   p_joint 1.541558e-03

Joint ci ratio: 1.126512e-01	ci left: 1.462666e-03	ci right 1.638505e-03	k: 1208	n:780000
Cons ci ratio: 3.961038e-03	ci left: 5.555595e-01	ci right 5.577657e-01	k: 434197	n:780000
KS ci ratio: 1.126512e-01	ci left: 1.462666e-03	ci right 1.638505e-03	k: 1208	n:780000
SLC13A2   780000 perm   421 sec   (1854 perm/sec)   p_kst 1.548718e-03   p_cons 5.566628e-01   p_joint 1.548718e-03

Joint ci ratio: 1.118673e-01	ci left: 1.465066e-03	ci right 1.639887e-03	k: 1225	n:790000
Cons ci ratio: 3.936672e-03	ci left: 5.554682e-01	ci right 5.576605e-01	k: 439686	n:790000
KS ci ratio: 1.118673e-01	ci left: 1.465066e-03	ci right 1.639887e-03	k: 1225	n:790000
SLC13A2   790000 perm   430 sec   (1839 perm/sec)   p_kst 1.550633e-03   p_cons 5.565646e-01   p_joint 1.550633e-03

Joint ci ratio: 1.108765e-01	ci left: 1.473487e-03	ci right 1.647654e-03	k: 1247	n:800000
Cons ci ratio: 3.911561e-03	ci left: 5.555293e-01	ci right 5.577078e-01	k: 445295	n:800000
KS ci ratio: 1.108765e-01	ci left: 1.473487e-03	ci right 1.647654e-03	k: 1247	n:800000
SLC13A2   800000 perm   439 sec   (1822 perm/sec)   p_kst 1.558750e-03   p_cons 5.566188e-01   p_joint 1.558750e-03

Joint ci ratio: 1.096094e-01	ci left: 1.490112e-03	ci right 1.664101e-03	k: 1276	n:810000
Cons ci ratio: 3.886166e-03	ci left: 5.556853e-01	ci right 5.578501e-01	k: 450982	n:810000
KS ci ratio: 1.096094e-01	ci left: 1.490112e-03	ci right 1.664101e-03	k: 1276	n:810000
SLC13A2   810000 perm   448 sec   (1806 perm/sec)   p_kst 1.575309e-03   p_cons 5.567679e-01   p_joint 1.575309e-03

Joint ci ratio: 1.090559e-01	ci left: 1.487360e-03	ci right 1.660094e-03	k: 1289	n:820000
Cons ci ratio: 3.862814e-03	ci left: 5.556386e-01	ci right 5.577903e-01	k: 456506	n:820000
KS ci ratio: 1.090559e-01	ci left: 1.487360e-03	ci right 1.660094e-03	k: 1289	n:820000
SLC13A2   820000 perm   458 sec   (1791 perm/sec)   p_kst 1.571951e-03   p_cons 5.567146e-01   p_joint 1.571951e-03

Joint ci ratio: 1.083027e-01	ci left: 1.490537e-03	ci right 1.662369e-03	k: 1307	n:830000
Cons ci ratio: 3.840028e-03	ci left: 5.555738e-01	ci right 5.577125e-01	k: 462014	n:830000
KS ci ratio: 1.083027e-01	ci left: 1.490537e-03	ci right 1.662369e-03	k: 1307	n:830000
SLC13A2   830000 perm   467 sec   (1778 perm/sec)   p_kst 1.574699e-03   p_cons 5.566434e-01   p_joint 1.574699e-03

Joint ci ratio: 1.074029e-01	ci left: 1.498277e-03	ci right 1.669475e-03	k: 1329	n:840000
Cons ci ratio: 3.816637e-03	ci left: 5.556404e-01	ci right 5.577663e-01	k: 467631	n:840000
KS ci ratio: 1.074029e-01	ci left: 1.498277e-03	ci right 1.669475e-03	k: 1329	n:840000
SLC13A2   840000 perm   476 sec   (1764 perm/sec)   p_kst 1.582143e-03   p_cons 5.567036e-01   p_joint 1.582143e-03

Joint ci ratio: 1.069218e-01	ci left: 1.494389e-03	ci right 1.664331e-03	k: 1341	n:850000
Cons ci ratio: 3.793894e-03	ci left: 5.556761e-01	ci right 5.577894e-01	k: 473223	n:850000
KS ci ratio: 1.069218e-01	ci left: 1.494389e-03	ci right 1.664331e-03	k: 1341	n:850000
SLC13A2   850000 perm   485 sec   (1751 perm/sec)   p_kst 1.577647e-03   p_cons 5.567329e-01   p_joint 1.577647e-03

Joint ci ratio: 1.064866e-01	ci left: 1.489462e-03	ci right 1.658110e-03	k: 1352	n:860000
Cons ci ratio: 3.771678e-03	ci left: 5.556947e-01	ci right 5.577957e-01	k: 478801	n:860000
KS ci ratio: 1.064866e-01	ci left: 1.489462e-03	ci right 1.658110e-03	k: 1352	n:860000
SLC13A2   860000 perm   495 sec   (1738 perm/sec)   p_kst 1.572093e-03   p_cons 5.567453e-01   p_joint 1.572093e-03

Joint ci ratio: 1.061346e-01	ci left: 1.482411e-03	ci right 1.649671e-03	k: 1361	n:870000
Cons ci ratio: 3.750292e-03	ci left: 5.556542e-01	ci right 5.577431e-01	k: 484328	n:870000
KS ci ratio: 1.061346e-01	ci left: 1.482411e-03	ci right 1.649671e-03	k: 1361	n:870000
SLC13A2   870000 perm   504 sec   (1725 perm/sec)   p_kst 1.564368e-03   p_cons 5.566989e-01   p_joint 1.564368e-03

Joint ci ratio: 1.055934e-01	ci left: 1.481053e-03	ci right 1.647255e-03	k: 1375	n:880000
Cons ci ratio: 3.729283e-03	ci left: 5.556124e-01	ci right 5.576895e-01	k: 489853	n:880000
KS ci ratio: 1.055934e-01	ci left: 1.481053e-03	ci right 1.647255e-03	k: 1375	n:880000
SLC13A2   880000 perm   514 sec   (1713 perm/sec)   p_kst 1.562500e-03   p_cons 5.566511e-01   p_joint 1.562500e-03

Joint ci ratio: 1.046839e-01	ci left: 1.490670e-03	ci right 1.656422e-03	k: 1399	n:890000
Cons ci ratio: 3.707948e-03	ci left: 5.556616e-01	ci right 5.577268e-01	k: 495458	n:890000
KS ci ratio: 1.046839e-01	ci left: 1.490670e-03	ci right 1.656422e-03	k: 1399	n:890000
SLC13A2   890000 perm   524 sec   (1699 perm/sec)   p_kst 1.571910e-03   p_cons 5.566944e-01   p_joint 1.571910e-03

Joint ci ratio: 1.041645e-01	ci left: 1.489256e-03	ci right 1.653979e-03	k: 1413	n:900000
Cons ci ratio: 3.687456e-03	ci left: 5.556452e-01	ci right 5.576989e-01	k: 501005	n:900000
KS ci ratio: 1.041645e-01	ci left: 1.489256e-03	ci right 1.653979e-03	k: 1413	n:900000
SLC13A2   900000 perm   534 sec   (1686 perm/sec)   p_kst 1.570000e-03   p_cons 5.566722e-01   p_joint 1.570000e-03

Joint ci ratio: 1.033992e-01	ci left: 1.495369e-03	ci right 1.659479e-03	k: 1434	n:910000
Cons ci ratio: 3.667023e-03	ci left: 5.556665e-01	ci right 5.577090e-01	k: 506586	n:910000
KS ci ratio: 1.033992e-01	ci left: 1.495369e-03	ci right 1.659479e-03	k: 1434	n:910000
SLC13A2   910000 perm   544 sec   (1674 perm/sec)   p_kst 1.575824e-03   p_cons 5.566879e-01   p_joint 1.575824e-03

Joint ci ratio: 1.030411e-01	ci left: 1.489703e-03	ci right 1.652591e-03	k: 1444	n:920000
Cons ci ratio: 3.646765e-03	ci left: 5.557092e-01	ci right 5.577405e-01	k: 512187	n:920000
KS ci ratio: 1.030411e-01	ci left: 1.489703e-03	ci right 1.652591e-03	k: 1444	n:920000
SLC13A2   920000 perm   554 sec   (1662 perm/sec)   p_kst 1.569565e-03   p_cons 5.567250e-01   p_joint 1.569565e-03

Joint ci ratio: 1.026514e-01	ci left: 1.485209e-03	ci right 1.646954e-03	k: 1455	n:930000
Cons ci ratio: 3.626587e-03	ci left: 5.557854e-01	ci right 5.578057e-01	k: 517820	n:930000
KS ci ratio: 1.026514e-01	ci left: 1.485209e-03	ci right 1.646954e-03	k: 1455	n:930000
SLC13A2   930000 perm   564 sec   (1650 perm/sec)   p_kst 1.564516e-03   p_cons 5.567957e-01   p_joint 1.564516e-03

Joint ci ratio: 1.023010e-01	ci left: 1.479774e-03	ci right 1.640344e-03	k: 1465	n:940000
Cons ci ratio: 3.607874e-03	ci left: 5.557046e-01	ci right 5.577142e-01	k: 523307	n:940000
KS ci ratio: 1.023010e-01	ci left: 1.479774e-03	ci right 1.640344e-03	k: 1465	n:940000
SLC13A2   940000 perm   574 sec   (1639 perm/sec)   p_kst 1.558511e-03   p_cons 5.567096e-01   p_joint 1.558511e-03

Joint ci ratio: 1.016100e-01	ci left: 1.484713e-03	ci right 1.644666e-03	k: 1485	n:950000
Cons ci ratio: 3.589111e-03	ci left: 5.556719e-01	ci right 5.576709e-01	k: 528838	n:950000
KS ci ratio: 1.016100e-01	ci left: 1.484713e-03	ci right 1.644666e-03	k: 1485	n:950000
SLC13A2   950000 perm   584 sec   (1627 perm/sec)   p_kst 1.563158e-03   p_cons 5.566716e-01   p_joint 1.563158e-03

Joint ci ratio: 1.012363e-01	ci left: 1.480415e-03	ci right 1.639283e-03	k: 1496	n:960000
Cons ci ratio: 3.570676e-03	ci left: 5.556347e-01	ci right 5.576233e-01	k: 534364	n:960000
KS ci ratio: 1.012363e-01	ci left: 1.480415e-03	ci right 1.639283e-03	k: 1496	n:960000
SLC13A2   960000 perm   594 sec   (1615 perm/sec)   p_kst 1.558333e-03   p_cons 5.566292e-01   p_joint 1.558333e-03

Joint ci ratio: 1.007662e-01	ci left: 1.479221e-03	ci right 1.637181e-03	k: 1510	n:970000
Cons ci ratio: 3.551194e-03	ci left: 5.557829e-01	ci right 5.577611e-01	k: 540069	n:970000
KS ci ratio: 1.007662e-01	ci left: 1.479221e-03	ci right 1.637181e-03	k: 1510	n:970000
SLC13A2   970000 perm   605 sec   (1604 perm/sec)   p_kst 1.556701e-03   p_cons 5.567722e-01   p_joint 1.556701e-03

Joint ci ratio: 1.000730e-01	ci left: 1.485018e-03	ci right 1.642441e-03	k: 1531	n:980000
Cons ci ratio: 3.533042e-03	ci left: 5.557862e-01	ci right 5.577543e-01	k: 545635	n:980000
KS ci ratio: 1.000730e-01	ci left: 1.485018e-03	ci right 1.642441e-03	k: 1531	n:980000
SLC13A2   980000 perm   615 sec   (1593 perm/sec)   p_kst 1.562245e-03   p_cons 5.567704e-01   p_joint 1.562245e-03

Joint ci ratio: 9.949007e-02	ci left: 1.487746e-03	ci right 1.644486e-03	k: 1549	n:990000
Cons ci ratio: 3.515093e-03	ci left: 5.557996e-01	ci right 5.577577e-01	k: 551211	n:990000
KS ci ratio: 9.949007e-02	ci left: 1.487746e-03	ci right 1.644486e-03	k: 1549	n:990000
SLC13A2   990000 perm   626 sec   (1582 perm/sec)   p_kst 1.564646e-03   p_cons 5.567788e-01   p_joint 1.564646e-03

Outputting figure to mutsig2_images.part000000000158/SLC13A2.2_1974_990000_0.0015646_0.55678_0.0015646.png
                gene_name: SLC13A2
               theta_stop: 0.099 
                    nperm: 990000 
                     p_ks: 0.0016 
        ci_ks_bounds_left: 0.0015 
       ci_ks_bounds_right: 0.0016 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.0016 
     ci_joint_bounds_left: 0.0015 
    ci_joint_bounds_right: 0.0016 

Current progress: 76 percent done.
SLC13A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.361654e-02	ci left: 2.127026e-01	ci right 2.290604e-01	k: 2208	n:10000
Cons ci ratio: 6.975563e-02	ci left: 2.315572e-01	ci right 2.483945e-01	k: 2399	n:10000
KS ci ratio: 5.772592e-02	ci left: 3.063966e-01	ci right 3.247110e-01	k: 3155	n:10000
SLC13A3   10000 perm   2 sec   (6080 perm/sec)   p_kst 3.155000e-01   p_cons 2.399000e-01   p_joint 2.208000e-01

Outputting figure to mutsig2_images.part000000000158/SLC13A3.2_1861_10000_0.3155_0.2399_0.2208.png
                gene_name: SLC13A3
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 78 percent done.
SLC15A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.122053e-02	ci left: 2.241507e-01	ci right 2.408054e-01	k: 2324	n:10000
Cons ci ratio: 1.857217e-02	ci left: 8.089748e-01	ci right 8.242403e-01	k: 8167	n:10000
KS ci ratio: 8.406407e-02	ci left: 1.710391e-01	ci right 1.861486e-01	k: 1785	n:10000
SLC15A1   10000 perm   2 sec   (5376 perm/sec)   p_kst 1.785000e-01   p_cons 8.167000e-01   p_joint 2.324000e-01

Outputting figure to mutsig2_images.part000000000158/SLC15A1.2_2219_10000_0.1785_0.8167_0.2324.png
                gene_name: SLC15A1
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 80 percent done.
SLC15A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.084306e-02	ci left: 7.713448e-01	ci right 7.876920e-01	k: 7796	n:10000
Cons ci ratio: 6.039576e-02	ci left: 2.873607e-01	ci right 3.053581e-01	k: 2963	n:10000
KS ci ratio: 2.778304e-02	ci left: 6.562561e-01	ci right 6.748474e-01	k: 6656	n:10000
SLC15A3   10000 perm   2 sec   (5942 perm/sec)   p_kst 6.656000e-01   p_cons 2.963000e-01   p_joint 7.796000e-01

Outputting figure to mutsig2_images.part000000000158/SLC15A3.2_1778_10000_0.6656_0.2963_0.7796.png
                gene_name: SLC15A3
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 82 percent done.
SLC16A11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.082690e-02	ci left: 4.697655e-01	ci right 4.894464e-01	k: 4796	n:10000
KS ci ratio: 2.324121e-02	ci left: 7.311828e-01	ci right 7.484773e-01	k: 7399	n:10000
SLC16A11   10000 perm   2 sec   (6293 perm/sec)   p_kst 7.399000e-01   p_cons 4.796000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000158/SLC16A11.2_1432_10000_0.7399_0.4796_1.png
                gene_name: SLC16A11
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
SLC16A14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.064274e-01	ci left: 1.363247e-02	ci right 1.865513e-02	k: 160	n:10000
Cons ci ratio: 5.585987e-01	ci left: 3.541199e-03	ci right 6.359123e-03	k: 48	n:10000
KS ci ratio: 1.894323e-02	ci left: 8.028818e-01	ci right 8.183368e-01	k: 8107	n:10000
SLC16A14   10000 perm   2 sec   (5851 perm/sec)   p_kst 8.107000e-01   p_cons 4.800000e-03   p_joint 1.600000e-02

Joint ci ratio: 3.495094e-01	ci left: 5.159405e-03	ci right 7.387804e-03	k: 124	n:20000
Cons ci ratio: 3.929888e-01	ci left: 3.979794e-03	ci right 5.968329e-03	k: 98	n:20000
KS ci ratio: 1.336399e-02	ci left: 8.059084e-01	ci right 8.168010e-01	k: 16228	n:20000
SLC16A14   20000 perm   4 sec   (5115 perm/sec)   p_kst 8.114000e-01   p_cons 4.900000e-03   p_joint 6.200000e-03

Joint ci ratio: 1.339189e-01	ci left: 2.590436e-02	ci right 2.965451e-02	k: 832	n:30000
Cons ci ratio: 2.997923e-01	ci left: 4.817905e-03	ci right 6.546609e-03	k: 169	n:30000
KS ci ratio: 1.085924e-02	ci left: 8.084064e-01	ci right 8.172663e-01	k: 24386	n:30000
SLC16A14   30000 perm   6 sec   (4910 perm/sec)   p_kst 8.128667e-01   p_cons 5.633333e-03   p_joint 2.773333e-02

Joint ci ratio: 8.353800e-02	ci left: 4.999129e-02	ci right 5.437402e-02	k: 2086	n:40000
Cons ci ratio: 2.544133e-01	ci left: 5.149620e-03	ci right 6.673453e-03	k: 235	n:40000
KS ci ratio: 9.383980e-03	ci left: 8.096729e-01	ci right 8.173316e-01	k: 32541	n:40000
SLC16A14   40000 perm   8 sec   (4766 perm/sec)   p_kst 8.135250e-01   p_cons 5.875000e-03   p_joint 5.215000e-02

Joint ci ratio: 1.146652e-01	ci left: 2.152885e-02	ci right 2.416695e-02	k: 1141	n:50000
Cons ci ratio: 2.299186e-01	ci left: 5.115511e-03	ci right 6.462842e-03	k: 288	n:50000
KS ci ratio: 8.382889e-03	ci left: 8.104605e-01	ci right 8.173030e-01	k: 40695	n:50000
SLC16A14   50000 perm   11 sec   (4644 perm/sec)   p_kst 8.139000e-01   p_cons 5.760000e-03   p_joint 2.282000e-02

Joint ci ratio: 8.239760e-02	ci left: 3.485023e-02	ci right 3.786150e-02	k: 2180	n:60000
Cons ci ratio: 2.104363e-01	ci left: 5.144882e-03	ci right 6.370335e-03	k: 344	n:60000
KS ci ratio: 7.631845e-03	ci left: 8.115843e-01	ci right 8.178185e-01	k: 48883	n:60000
SLC16A14   60000 perm   13 sec   (4538 perm/sec)   p_kst 8.147167e-01   p_cons 5.733333e-03   p_joint 3.633333e-02

Joint ci ratio: 8.089359e-02	ci left: 3.114263e-02	ci right 3.378203e-02	k: 2271	n:70000
Cons ci ratio: 1.937401e-01	ci left: 5.250886e-03	ci right 6.390664e-03	k: 406	n:70000
KS ci ratio: 7.086147e-03	ci left: 8.109393e-01	ci right 8.167204e-01	k: 56969	n:70000
SLC16A14   70000 perm   16 sec   (4434 perm/sec)   p_kst 8.138429e-01   p_cons 5.800000e-03   p_joint 3.244286e-02

Joint ci ratio: 9.262070e-02	ci left: 2.088471e-02	ci right 2.292516e-02	k: 1751	n:80000
Cons ci ratio: 1.842690e-01	ci left: 5.106568e-03	ci right 6.154774e-03	k: 449	n:80000
KS ci ratio: 6.641989e-03	ci left: 8.105068e-01	ci right 8.159205e-01	k: 65058	n:80000
SLC16A14   80000 perm   18 sec   (4340 perm/sec)   p_kst 8.132250e-01   p_cons 5.612500e-03   p_joint 2.188750e-02

Joint ci ratio: 8.755103e-02	ci left: 2.083409e-02	ci right 2.275246e-02	k: 1960	n:90000
Cons ci ratio: 1.739467e-01	ci left: 5.122905e-03	ci right 6.109371e-03	k: 504	n:90000
KS ci ratio: 6.266760e-03	ci left: 8.104370e-01	ci right 8.155428e-01	k: 73170	n:90000
SLC16A14   90000 perm   21 sec   (4252 perm/sec)   p_kst 8.130000e-01   p_cons 5.600000e-03   p_joint 2.177778e-02

Joint ci ratio: 8.327120e-02	ci left: 2.077645e-02	ci right 2.259144e-02	k: 2167	n:100000
Cons ci ratio: 1.643021e-01	ci left: 5.194825e-03	ci right 6.134196e-03	k: 565	n:100000
KS ci ratio: 5.932259e-03	ci left: 8.112326e-01	ci right 8.160692e-01	k: 81366	n:100000
SLC16A14   100000 perm   24 sec   (4171 perm/sec)   p_kst 8.136600e-01   p_cons 5.650000e-03   p_joint 2.167000e-02

Joint ci ratio: 7.932464e-02	ci left: 2.085597e-02	ci right 2.258756e-02	k: 2388	n:110000
Cons ci ratio: 1.580145e-01	ci left: 5.123873e-03	ci right 6.011592e-03	k: 611	n:110000
KS ci ratio: 5.659677e-03	ci left: 8.111580e-01	ci right 8.157709e-01	k: 89482	n:110000
SLC16A14   110000 perm   27 sec   (4091 perm/sec)   p_kst 8.134727e-01   p_cons 5.554545e-03   p_joint 2.170909e-02

Joint ci ratio: 7.581658e-02	ci left: 2.096482e-02	ci right 2.262507e-02	k: 2614	n:120000
Cons ci ratio: 1.511323e-01	ci left: 5.153523e-03	ci right 6.003973e-03	k: 668	n:120000
KS ci ratio: 5.415263e-03	ci left: 8.114519e-01	ci right 8.158663e-01	k: 97640	n:120000
SLC16A14   120000 perm   30 sec   (4015 perm/sec)   p_kst 8.136667e-01   p_cons 5.566667e-03   p_joint 2.178333e-02

Joint ci ratio: 7.269699e-02	ci left: 2.108102e-02	ci right 2.267887e-02	k: 2843	n:130000
Cons ci ratio: 1.430121e-01	ci left: 5.335066e-03	ci right 6.164137e-03	k: 746	n:130000
KS ci ratio: 5.204354e-03	ci left: 8.114491e-01	ci right 8.156908e-01	k: 105765	n:130000
SLC16A14   130000 perm   33 sec   (3942 perm/sec)   p_kst 8.135769e-01   p_cons 5.738462e-03   p_joint 2.186923e-02

Joint ci ratio: 6.985197e-02	ci left: 2.123096e-02	ci right 2.277464e-02	k: 3079	n:140000
Cons ci ratio: 1.382828e-01	ci left: 5.312346e-03	ci right 6.108336e-03	k: 798	n:140000
KS ci ratio: 5.015130e-03	ci left: 8.115213e-01	ci right 8.156085e-01	k: 113900	n:140000
SLC16A14   140000 perm   36 sec   (3873 perm/sec)   p_kst 8.135714e-01   p_cons 5.700000e-03   p_joint 2.199286e-02

Joint ci ratio: 6.735831e-02	ci left: 2.133573e-02	ci right 2.282949e-02	k: 3311	n:150000
Cons ci ratio: 1.331311e-01	ci left: 5.363942e-03	ci right 6.135351e-03	k: 861	n:150000
KS ci ratio: 4.844512e-03	ci left: 8.116266e-01	ci right 8.155746e-01	k: 122041	n:150000
SLC16A14   150000 perm   39 sec   (3805 perm/sec)   p_kst 8.136067e-01   p_cons 5.740000e-03   p_joint 2.207333e-02

Joint ci ratio: 5.142964e-02	ci left: 3.413567e-02	ci right 3.594373e-02	k: 5605	n:160000
Cons ci ratio: 1.288661e-01	ci left: 5.379320e-03	ci right 6.126261e-03	k: 919	n:160000
KS ci ratio: 4.693487e-03	ci left: 8.115073e-01	ci right 8.153313e-01	k: 130148	n:160000
SLC16A14   160000 perm   43 sec   (3741 perm/sec)   p_kst 8.134250e-01   p_cons 5.743750e-03   p_joint 3.503125e-02

Joint ci ratio: 4.985236e-02	ci left: 3.421855e-02	ci right 3.597382e-02	k: 5965	n:170000
Cons ci ratio: 1.254386e-01	ci left: 5.353343e-03	ci right 6.075436e-03	k: 970	n:170000
KS ci ratio: 4.553990e-03	ci left: 8.115220e-01	ci right 8.152320e-01	k: 138275	n:170000
SLC16A14   170000 perm   46 sec   (3679 perm/sec)   p_kst 8.133824e-01   p_cons 5.705882e-03   p_joint 3.508824e-02

Joint ci ratio: 4.847142e-02	ci left: 3.421062e-02	ci right 3.591551e-02	k: 6310	n:180000
Cons ci ratio: 1.216144e-01	ci left: 5.389743e-03	ci right 6.092986e-03	k: 1032	n:180000
KS ci ratio: 4.427611e-03	ci left: 8.114418e-01	ci right 8.150481e-01	k: 146385	n:180000
SLC16A14   180000 perm   50 sec   (3622 perm/sec)   p_kst 8.132500e-01   p_cons 5.733333e-03   p_joint 3.505556e-02

Joint ci ratio: 4.707113e-02	ci left: 3.438624e-02	ci right 3.604903e-02	k: 6690	n:190000
Cons ci ratio: 1.177957e-01	ci left: 5.453262e-03	ci right 6.140896e-03	k: 1100	n:190000
KS ci ratio: 4.310453e-03	ci left: 8.114242e-01	ci right 8.149346e-01	k: 154505	n:190000
SLC16A14   190000 perm   53 sec   (3565 perm/sec)   p_kst 8.131842e-01   p_cons 5.789474e-03   p_joint 3.521053e-02

Joint ci ratio: 4.586293e-02	ci left: 3.443121e-02	ci right 3.605230e-02	k: 7047	n:200000
Cons ci ratio: 1.147109e-01	ci left: 5.471879e-03	ci right 6.142567e-03	k: 1160	n:200000
KS ci ratio: 4.200676e-03	ci left: 8.115149e-01	ci right 8.149360e-01	k: 162646	n:200000
SLC16A14   200000 perm   57 sec   (3510 perm/sec)   p_kst 8.132300e-01   p_cons 5.800000e-03   p_joint 3.523500e-02

Joint ci ratio: 4.477771e-02	ci left: 3.442056e-02	ci right 3.600182e-02	k: 7393	n:210000
Cons ci ratio: 1.123667e-01	ci left: 5.438014e-03	ci right 6.090028e-03	k: 1209	n:210000
KS ci ratio: 4.097338e-03	ci left: 8.117127e-01	ci right 8.150501e-01	k: 170811	n:210000
SLC16A14   210000 perm   61 sec   (3457 perm/sec)   p_kst 8.133857e-01   p_cons 5.757143e-03   p_joint 3.520476e-02

Joint ci ratio: 4.374556e-02	ci left: 3.444279e-02	ci right 3.598767e-02	k: 7746	n:220000
Cons ci ratio: 1.102045e-01	ci left: 5.402935e-03	ci right 6.037467e-03	k: 1257	n:220000
KS ci ratio: 4.004623e-03	ci left: 8.116379e-01	ci right 8.148993e-01	k: 178920	n:220000
SLC16A14   220000 perm   65 sec   (3406 perm/sec)   p_kst 8.132727e-01   p_cons 5.713636e-03   p_joint 3.520909e-02

Joint ci ratio: 4.280355e-02	ci left: 3.442904e-02	ci right 3.593923e-02	k: 8091	n:230000
Cons ci ratio: 1.075432e-01	ci left: 5.434484e-03	ci right 6.056332e-03	k: 1320	n:230000
KS ci ratio: 3.918264e-03	ci left: 8.115443e-01	ci right 8.147347e-01	k: 187023	n:230000
SLC16A14   230000 perm   69 sec   (3351 perm/sec)   p_kst 8.131435e-01   p_cons 5.739130e-03   p_joint 3.517826e-02

Joint ci ratio: 4.184541e-02	ci left: 3.453637e-02	ci right 3.601655e-02	k: 8465	n:240000
Cons ci ratio: 1.048754e-01	ci left: 5.483861e-03	ci right 6.094834e-03	k: 1388	n:240000
KS ci ratio: 3.833053e-03	ci left: 8.117937e-01	ci right 8.149154e-01	k: 195206	n:240000
SLC16A14   240000 perm   73 sec   (3299 perm/sec)   p_kst 8.133583e-01   p_cons 5.783333e-03   p_joint 3.527083e-02

Joint ci ratio: 4.099937e-02	ci left: 3.455230e-02	ci right 3.600250e-02	k: 8818	n:250000
Cons ci ratio: 1.031833e-01	ci left: 5.443713e-03	ci right 6.039833e-03	k: 1434	n:250000
KS ci ratio: 3.753560e-03	ci left: 8.119916e-01	ci right 8.150491e-01	k: 203381	n:250000
SLC16A14   250000 perm   77 sec   (3252 perm/sec)   p_kst 8.135240e-01   p_cons 5.736000e-03   p_joint 3.527200e-02

Joint ci ratio: 4.018448e-02	ci left: 3.459775e-02	ci right 3.602033e-02	k: 9179	n:260000
Cons ci ratio: 1.011250e-01	ci left: 5.455467e-03	ci right 6.040249e-03	k: 1493	n:260000
KS ci ratio: 3.677273e-03	ci left: 8.123022e-01	ci right 8.152985e-01	k: 211589	n:260000
SLC16A14   260000 perm   81 sec   (3206 perm/sec)   p_kst 8.138038e-01   p_cons 5.742308e-03   p_joint 3.530385e-02

Joint ci ratio: 3.940563e-02	ci left: 3.465843e-02	ci right 3.605527e-02	k: 9545	n:270000
Cons ci ratio: 9.896114e-02	ci left: 5.491746e-03	ci right 6.067089e-03	k: 1559	n:270000
KS ci ratio: 3.608710e-03	ci left: 8.123153e-01	ci right 8.152557e-01	k: 219723	n:270000
SLC16A14   270000 perm   86 sec   (3156 perm/sec)   p_kst 8.137889e-01   p_cons 5.774074e-03   p_joint 3.535185e-02

Outputting figure to mutsig2_images.part000000000158/SLC16A14.2_1549_270000_0.81379_0.0057741_0.035352.png
                gene_name: SLC16A14
               theta_stop: 0.099 
                    nperm: 270000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.0058 
      ci_cons_bounds_left: 0.0055 
     ci_cons_bounds_right: 0.0061 
                  p_joint: 0.035 
     ci_joint_bounds_left: 0.035 
    ci_joint_bounds_right: 0.036 

Current progress: 85 percent done.
SLC16A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.341025e-02	ci left: 7.283538e-01	ci right 7.457079e-01	k: 7371	n:10000
Cons ci ratio: 3.487684e-02	ci left: 5.483008e-01	ci right 5.678653e-01	k: 5581	n:10000
KS ci ratio: 3.656271e-02	ci left: 5.248649e-01	ci right 5.445149e-01	k: 5347	n:10000
SLC16A4   10000 perm   2 sec   (6276 perm/sec)   p_kst 5.347000e-01   p_cons 5.581000e-01   p_joint 7.371000e-01

Outputting figure to mutsig2_images.part000000000158/SLC16A4.2_1496_10000_0.5347_0.5581_0.7371.png
                gene_name: SLC16A4
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 87 percent done.
SLC16A6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.070647e-01	ci left: 1.118366e-01	ci right 1.245868e-01	k: 1181	n:10000
Cons ci ratio: 9.287501e-02	ci left: 1.441328e-01	ci right 1.582710e-01	k: 1511	n:10000
KS ci ratio: 8.358022e-02	ci left: 1.727107e-01	ci right 1.878760e-01	k: 1802	n:10000
SLC16A6   10000 perm   2 sec   (5838 perm/sec)   p_kst 1.802000e-01   p_cons 1.511000e-01   p_joint 1.181000e-01

Joint ci ratio: 9.553363e-03	ci left: 8.894986e-01	ci right 8.980865e-01	k: 17877	n:20000
Cons ci ratio: 6.202810e-02	ci left: 1.612621e-01	ci right 1.716351e-01	k: 3328	n:20000
KS ci ratio: 5.866479e-02	ci left: 1.771189e-01	ci right 1.878736e-01	k: 3649	n:20000
SLC16A6   20000 perm   4 sec   (5176 perm/sec)   p_kst 1.824500e-01   p_cons 1.664000e-01   p_joint 8.938500e-01

Outputting figure to mutsig2_images.part000000000158/SLC16A6.2_1592_20000_0.18245_0.1664_0.89385.png
                gene_name: SLC16A6
               theta_stop: 0.062 
                    nperm: 20000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 89 percent done.
SLC16A9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.385608e-02	ci left: 5.629343e-01	ci right 5.824233e-01	k: 5727	n:10000
Cons ci ratio: 2.819591e-02	ci left: 6.496136e-01	ci right 6.682937e-01	k: 6590	n:10000
KS ci ratio: 5.114064e-02	ci left: 3.605262e-01	ci right 3.795496e-01	k: 3700	n:10000
SLC16A9   10000 perm   2 sec   (6006 perm/sec)   p_kst 3.700000e-01   p_cons 6.590000e-01   p_joint 5.727000e-01

Outputting figure to mutsig2_images.part000000000158/SLC16A9.2_1550_10000_0.37_0.659_0.5727.png
                gene_name: SLC16A9
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 91 percent done.
SLC18A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.271622e-02	ci left: 7.399757e-01	ci right 7.570793e-01	k: 7486	n:10000
KS ci ratio: 4.037172e-02	ci left: 4.753600e-01	ci right 4.950486e-01	k: 4852	n:10000
SLC18A2   10000 perm   2 sec   (5905 perm/sec)   p_kst 4.852000e-01   p_cons 7.486000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000158/SLC18A2.2_1605_10000_0.4852_0.7486_1.png
                gene_name: SLC18A2
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
SLC19A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.230306e-02	ci left: 4.520910e-01	ci right 4.717312e-01	k: 4619	n:10000
Cons ci ratio: 7.717009e-02	ci left: 1.971244e-01	ci right 2.130478e-01	k: 2050	n:10000
KS ci ratio: 4.619910e-02	ci left: 4.088062e-01	ci right 4.282413e-01	k: 4185	n:10000
SLC19A2   10000 perm   2 sec   (6243 perm/sec)   p_kst 4.185000e-01   p_cons 2.050000e-01   p_joint 4.619000e-01

Outputting figure to mutsig2_images.part000000000158/SLC19A2.2_1518_10000_0.4185_0.205_0.4619.png
                gene_name: SLC19A2
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 95 percent done.
SLC1A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.481289e-02	ci left: 4.236581e-01	ci right 4.431807e-01	k: 4334	n:10000
KS ci ratio: 4.266216e-02	ci left: 4.478988e-01	ci right 4.675258e-01	k: 4577	n:10000
SLC1A1   10000 perm   2 sec   (6069 perm/sec)   p_kst 4.577000e-01   p_cons 4.334000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000158/SLC1A1.2_1623_10000_0.4577_0.4334_1.png
                gene_name: SLC1A1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
SLC1A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.018688e-02	ci left: 7.822885e-01	ci right 7.983421e-01	k: 7904	n:10000
KS ci ratio: 3.098618e-02	ci left: 6.057823e-01	ci right 6.249505e-01	k: 6154	n:10000
SLC1A3   10000 perm   2 sec   (5552 perm/sec)   p_kst 6.154000e-01   p_cons 7.904000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000158/SLC1A3.2_1682_10000_0.6154_0.7904_1.png
                gene_name: SLC1A3
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
SLC1A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.166431e-02	ci left: 5.954396e-01	ci right 6.146991e-01	k: 6051	n:10000
KS ci ratio: 4.096618e-02	ci left: 4.680674e-01	ci right 4.877455e-01	k: 4779	n:10000
SLC1A4   10000 perm   2 sec   (5919 perm/sec)   p_kst 4.779000e-01   p_cons 6.051000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000158/SLC1A4.2_1631_10000_0.4779_0.6051_1.png
                gene_name: SLC1A4
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000158
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 158 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1655>
Subject: Job 8004545: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1655>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000159> was used as the working directory.
Started at Sun Nov 11 15:17:28 2012
Results reported at Sun Nov 11 15:23:55 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000159.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000159.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 159  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000159.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    423.90 sec.
    Max Memory :      4681 MB
    Max Swap   :      7095 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
159
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 159
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 159: processing genes 14295 - 14385
Calculating significance of each gene.
Using projection method.
14295	SLC20A1	5.029867e-01
14296	SLC20A2	6.298927e-01
14297	SLC22A1	6.173453e-02
14298	SLC22A10	1
14299	SLC22A11	1
14300	SLC22A12	5.908300e-01
14301	SLC22A13	3.702466e-01
14302	SLC22A14	8.247716e-01
14303	SLC22A15	8.551936e-01
14304	SLC22A16	1
14305	SLC22A17	1
14306	SLC22A18	1
14307	SLC22A2	4.927616e-01
14308	SLC22A20	4.924949e-01
14309	SLC22A23	5.536708e-01
14310	SLC22A25	6.240999e-01
14311	SLC22A3	1
14312	SLC22A4	1
14313	SLC22A5	8.177873e-01
14314	SLC22A6	1
14315	SLC22A7	3.345887e-01
14316	SLC22A8	2.585461e-01
14317	SLC22A9	1.220779e-01
14318	SLC23A1	6.827754e-01
14319	SLC23A2	7.315977e-01
14320	SLC23A3	8.415788e-01
14321	SLC24A1	4.768668e-01
14322	SLC24A2	1.067463e-01
14323	SLC24A3	7.421198e-01
14324	SLC24A4	2.939745e-04
14325	SLC24A5	1
14326	SLC24A6	8.103634e-01
14327	SLC25A1	1
14328	SLC25A10	5.783265e-01
14329	SLC25A11	5.465419e-01
14330	SLC25A12	8.005985e-01
14331	SLC25A13	8.280354e-02
14332	SLC25A14	1
14333	SLC25A15	5.432872e-01
14334	SLC25A16	4.863348e-01
14335	SLC25A17	1
14336	SLC25A18	1.377254e-01
14337	SLC25A19	1
14338	SLC25A2	4.625016e-01
14339	SLC25A20	5.914452e-01
14340	SLC25A21	1
14341	SLC25A22	1
14342	SLC25A23	1
14343	SLC25A24	5.260526e-01
14344	SLC25A25	6.714321e-01
14345	SLC25A26	1
14346	SLC25A27	1
14347	SLC25A28	6.879845e-01
14348	SLC25A3	1.200245e-01
14349	SLC25A30	4.508725e-01
14350	SLC25A31	5.995588e-02
14351	SLC25A32	1
14352	SLC25A33	1.687287e-01
14353	SLC25A34	4.520591e-01
14354	SLC25A35	2.548588e-01
14355	SLC25A36	5.060401e-01
14356	SLC25A37	4.262060e-02
14357	SLC25A38	1.378264e-01
14358	SLC25A39	1
14359	SLC25A4	1
14360	SLC25A40	1
14361	SLC25A41	3.631988e-01
14362	SLC25A42	1
14363	SLC25A43	1
14364	SLC25A44	1
14365	SLC25A45	1
14366	SLC25A46	7.523128e-01
14367	SLC25A5	3.848817e-01
14368	SLC25A6	4.743167e-01
14369	SLC26A1	1
14370	SLC26A10	3.094017e-01
14371	SLC26A11	8.765227e-01
14372	SLC26A2	1
14373	SLC26A3	1.602419e-01
14374	SLC26A4	8.622284e-01
14375	SLC26A5	6.591664e-01
14376	SLC26A6	1
14377	SLC26A7	9.046040e-02
14378	SLC26A8	4.406304e-01
14379	SLC26A9	1
14380	SLC27A1	8.956700e-01
14381	SLC27A2	1.398085e-01
14382	SLC27A3	1
14383	SLC27A4	8.110261e-01
14384	SLC27A5	2.681842e-01
14385	SLC27A6	7.047029e-01
Done

Running MutSig 2:
Scatter job 159: processing genes 14295 - 14385
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SLC24A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.113168e-03	ci left: 9.442976e-01	ci right 9.530386e-01	k: 9488	n:10000
KS ci ratio: 7.573360e-03	ci left: 9.602659e-01	ci right 9.676606e-01	k: 9641	n:10000
SLC24A4   10000 perm   2 sec   (4823 perm/sec)   p_kst 9.641000e-01   p_cons 9.488000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000159/SLC24A4.10_1886_10000_0.9641_0.9488_1.png
                gene_name: SLC24A4
               theta_stop: 0.0091 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 2 percent done.
SLC26A7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.443180e-02	ci left: 4.278462e-01	ci right 4.473902e-01	k: 4376	n:10000
Cons ci ratio: 1.303421e-02	ci left: 8.944660e-01	ci right 9.062996e-01	k: 9005	n:10000
KS ci ratio: 5.644165e-02	ci left: 3.161198e-01	ci right 3.345821e-01	k: 3253	n:10000
SLC26A7   10000 perm   2 sec   (5203 perm/sec)   p_kst 3.253000e-01   p_cons 9.005000e-01   p_joint 4.376000e-01

Outputting figure to mutsig2_images.part000000000159/SLC26A7.8_2104_10000_0.3253_0.9005_0.4376.png
                gene_name: SLC26A7
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 5 percent done.
SLC25A13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.490924e-02	ci left: 3.282306e-01	ci right 3.468641e-01	k: 3375	n:10000
Cons ci ratio: 3.720675e-02	ci left: 5.161571e-01	ci right 5.358278e-01	k: 5260	n:10000
KS ci ratio: 8.472899e-02	ci left: 1.687778e-01	ci right 1.838112e-01	k: 1762	n:10000
SLC25A13   10000 perm   2 sec   (5675 perm/sec)   p_kst 1.762000e-01   p_cons 5.260000e-01   p_joint 3.375000e-01

Outputting figure to mutsig2_images.part000000000159/SLC25A13.6_2103_10000_0.1762_0.526_0.3375.png
                gene_name: SLC25A13
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 7 percent done.
SLC22A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.063115e-02	ci left: 4.721630e-01	ci right 4.918475e-01	k: 4820	n:10000
Cons ci ratio: 2.476599e-02	ci left: 7.057380e-01	ci right 7.235368e-01	k: 7147	n:10000
KS ci ratio: 5.216508e-02	ci left: 3.513793e-01	ci right 3.703019e-01	k: 3608	n:10000
SLC22A1   10000 perm   2 sec   (5575 perm/sec)   p_kst 3.608000e-01   p_cons 7.147000e-01   p_joint 4.820000e-01

Outputting figure to mutsig2_images.part000000000159/SLC22A1.5_1709_10000_0.3608_0.7147_0.482.png
                gene_name: SLC22A1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 9 percent done.
SLC24A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.972278e-02	ci left: 4.834542e-01	ci right 5.031497e-01	k: 4933	n:10000
Cons ci ratio: 8.606556e-02	ci left: 1.643550e-01	ci right 1.792367e-01	k: 1717	n:10000
KS ci ratio: 1.542238e-02	ci left: 8.591667e-01	ci right 8.726194e-01	k: 8660	n:10000
SLC24A2   10000 perm   2 sec   (5744 perm/sec)   p_kst 8.660000e-01   p_cons 1.717000e-01   p_joint 4.933000e-01

Outputting figure to mutsig2_images.part000000000159/SLC24A2.5_2026_10000_0.866_0.1717_0.4933.png
                gene_name: SLC24A2
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 11 percent done.
SLC26A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.055801e-02	ci left: 4.730621e-01	ci right 4.927479e-01	k: 4829	n:10000
Cons ci ratio: 2.904114e-02	ci left: 6.361335e-01	ci right 6.549816e-01	k: 6456	n:10000
KS ci ratio: 5.551626e-02	ci left: 3.233656e-01	ci right 3.419320e-01	k: 3326	n:10000
SLC26A3   10000 perm   2 sec   (5384 perm/sec)   p_kst 3.326000e-01   p_cons 6.456000e-01   p_joint 4.829000e-01

Outputting figure to mutsig2_images.part000000000159/SLC26A3.5_2375_10000_0.3326_0.6456_0.4829.png
                gene_name: SLC26A3
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 14 percent done.
SLC26A8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.270362e-02	ci left: 2.721060e-01	ci right 2.898218e-01	k: 2809	n:10000
Cons ci ratio: 1.224140e-01	ci left: 8.727953e-02	ci right 9.875882e-02	k: 929	n:10000
KS ci ratio: 1.748396e-02	ci left: 8.266621e-01	ci right 8.413428e-01	k: 8341	n:10000
SLC26A8   10000 perm   2 sec   (5266 perm/sec)   p_kst 8.341000e-01   p_cons 9.290000e-02   p_joint 2.809000e-01

Joint ci ratio: 4.505126e-02	ci left: 2.683730e-01	ci right 2.807926e-01	k: 5491	n:20000
Cons ci ratio: 8.736650e-02	ci left: 8.744074e-02	ci right 9.547849e-02	k: 1828	n:20000
KS ci ratio: 1.247394e-02	ci left: 8.263406e-01	ci right 8.367629e-01	k: 16632	n:20000
SLC26A8   20000 perm   4 sec   (4741 perm/sec)   p_kst 8.316000e-01   p_cons 9.140000e-02   p_joint 2.745500e-01

Outputting figure to mutsig2_images.part000000000159/SLC26A8.5_2989_20000_0.8316_0.0914_0.27455.png
                gene_name: SLC26A8
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.091 
      ci_cons_bounds_left: 0.087 
     ci_cons_bounds_right: 0.095 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 16 percent done.
SLC27A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.640239e-02	ci left: 6.787147e-01	ci right 6.969757e-01	k: 6879	n:10000
Cons ci ratio: 4.269655e-02	ci left: 4.474996e-01	ci right 4.671253e-01	k: 4573	n:10000
KS ci ratio: 2.499685e-02	ci left: 7.019041e-01	ci right 7.197729e-01	k: 7109	n:10000
SLC27A2   10000 perm   2 sec   (5651 perm/sec)   p_kst 7.109000e-01   p_cons 4.573000e-01   p_joint 6.879000e-01

Outputting figure to mutsig2_images.part000000000159/SLC27A2.5_1903_10000_0.7109_0.4573_0.6879.png
                gene_name: SLC27A2
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 18 percent done.
SLC27A6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.588722e-02	ci left: 6.871808e-01	ci right 7.053048e-01	k: 6963	n:10000
Cons ci ratio: 6.894319e-02	ci left: 2.358052e-01	ci right 2.527440e-01	k: 2442	n:10000
KS ci ratio: 2.358540e-02	ci left: 7.254243e-01	ci right 7.428391e-01	k: 7342	n:10000
SLC27A6   10000 perm   2 sec   (5387 perm/sec)   p_kst 7.342000e-01   p_cons 2.442000e-01   p_joint 6.963000e-01

Outputting figure to mutsig2_images.part000000000159/SLC27A6.5_1900_10000_0.7342_0.2442_0.6963.png
                gene_name: SLC27A6
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 20 percent done.
SLC22A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.564171e-02	ci left: 2.036295e-01	ci right 2.197388e-01	k: 2116	n:10000
Cons ci ratio: 7.662992e-02	ci left: 1.993910e-01	ci right 2.153799e-01	k: 2073	n:10000
KS ci ratio: 7.791142e-02	ci left: 1.940700e-01	ci right 2.099040e-01	k: 2019	n:10000
SLC22A2   10000 perm   2 sec   (5209 perm/sec)   p_kst 2.019000e-01   p_cons 2.073000e-01   p_joint 2.116000e-01

Outputting figure to mutsig2_images.part000000000159/SLC22A2.4_1712_10000_0.2019_0.2073_0.2116.png
                gene_name: SLC22A2
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 23 percent done.
SLC22A8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.385595e-02	ci left: 2.648793e-01	ci right 2.824527e-01	k: 2736	n:10000
Cons ci ratio: 1.600319e-01	ci left: 5.205444e-02	ci right 6.120599e-02	k: 565	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
SLC22A8   10000 perm   2 sec   (6157 perm/sec)   p_kst 1   p_cons 5.650000e-02   p_joint 2.736000e-01

Joint ci ratio: 5.037513e-02	ci left: 2.265111e-01	ci right 2.382668e-01	k: 4647	n:20000
Cons ci ratio: 1.245349e-01	ci left: 4.425346e-02	ci right 5.017908e-02	k: 943	n:20000
KS ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
SLC22A8   20000 perm   4 sec   (5504 perm/sec)   p_kst 1   p_cons 4.715000e-02   p_joint 2.323500e-01

Joint ci ratio: 4.445493e-02	ci left: 2.012372e-01	ci right 2.104199e-01	k: 6174	n:30000
Cons ci ratio: 1.022146e-01	ci left: 4.433973e-02	ci right 4.914854e-02	k: 1401	n:30000
KS ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
SLC22A8   30000 perm   6 sec   (5255 perm/sec)   p_kst 1   p_cons 4.670000e-02   p_joint 2.058000e-01

Joint ci ratio: 3.733539e-02	ci left: 2.120003e-01	ci right 2.200910e-01	k: 8641	n:40000
Cons ci ratio: 8.759885e-02	ci left: 4.558280e-02	ci right 4.978318e-02	k: 1906	n:40000
KS ci ratio: 9.799510e-05	ci left: 9.999078e-01	ci right 1	k: 40000	n:40000
SLC22A8   40000 perm   8 sec   (5089 perm/sec)   p_kst 1   p_cons 4.765000e-02   p_joint 2.160250e-01

Outputting figure to mutsig2_images.part000000000159/SLC22A8.4_1669_40000_1_0.04765_0.21602.png
                gene_name: SLC22A8
               theta_stop: 0.088 
                    nperm: 40000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.048 
      ci_cons_bounds_left: 0.046 
     ci_cons_bounds_right: 0.050 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 25 percent done.
SLC22A9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.056233e-02	ci left: 6.123115e-01	ci right 6.314175e-01	k: 6219	n:10000
KS ci ratio: 1.612577e-02	ci left: 8.482515e-01	ci right 8.621409e-01	k: 8553	n:10000
SLC22A9   10000 perm   2 sec   (6114 perm/sec)   p_kst 8.553000e-01   p_cons 6.219000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000159/SLC22A9.4_1702_10000_0.8553_0.6219_1.png
                gene_name: SLC22A9
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 27 percent done.
SLC24A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.602909e-02	ci left: 2.019537e-01	ci right 2.180156e-01	k: 2099	n:10000
Cons ci ratio: 1.540616e-01	ci left: 5.609849e-02	ci right 6.555935e-02	k: 607	n:10000
KS ci ratio: 4.269655e-02	ci left: 4.474996e-01	ci right 4.671253e-01	k: 4573	n:10000
SLC24A5   10000 perm   2 sec   (5958 perm/sec)   p_kst 4.573000e-01   p_cons 6.070000e-02   p_joint 2.099000e-01

Joint ci ratio: 4.835127e-02	ci left: 2.413327e-01	ci right 2.533408e-01	k: 4946	n:20000
Cons ci ratio: 1.070774e-01	ci left: 5.942775e-02	ci right 6.620004e-02	k: 1255	n:20000
KS ci ratio: 2.995138e-02	ci left: 4.543723e-01	ci right 4.682389e-01	k: 9226	n:20000
SLC24A5   20000 perm   4 sec   (5341 perm/sec)   p_kst 4.613000e-01   p_cons 6.275000e-02   p_joint 2.473000e-01

Joint ci ratio: 3.840767e-02	ci left: 2.527578e-01	ci right 2.626892e-01	k: 7731	n:30000
Cons ci ratio: 8.742900e-02	ci left: 6.004786e-02	ci right 6.557051e-02	k: 1883	n:30000
KS ci ratio: 2.454463e-02	ci left: 4.538481e-01	ci right 4.651597e-01	k: 13785	n:30000
SLC24A5   30000 perm   6 sec   (5086 perm/sec)   p_kst 4.595000e-01   p_cons 6.276667e-02   p_joint 2.577000e-01

Outputting figure to mutsig2_images.part000000000159/SLC24A5.4_1539_30000_0.4595_0.062767_0.2577.png
                gene_name: SLC24A5
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.063 
      ci_cons_bounds_left: 0.060 
     ci_cons_bounds_right: 0.066 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 30 percent done.
SLC25A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.644352e-02	ci left: 8.432573e-01	ci right 8.573380e-01	k: 8504	n:10000
KS ci ratio: 2.083700e-02	ci left: 7.714461e-01	ci right 7.877907e-01	k: 7797	n:10000
SLC25A3   10000 perm   2 sec   (6115 perm/sec)   p_kst 7.797000e-01   p_cons 8.504000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000159/SLC25A3.4_1243_10000_0.7797_0.8504_1.png
                gene_name: SLC25A3
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 32 percent done.
SLC25A37
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.070530e-01	ci left: 3.100901e-02	ci right 3.826537e-02	k: 345	n:10000
Cons ci ratio: 2.765105e-01	ci left: 1.697368e-02	ci right 2.251108e-02	k: 196	n:10000
KS ci ratio: 1.546038e-01	ci left: 5.571306e-02	ci right 6.514503e-02	k: 603	n:10000
SLC25A37   10000 perm   2 sec   (6174 perm/sec)   p_kst 6.030000e-02   p_cons 1.960000e-02   p_joint 3.450000e-02

Joint ci ratio: 1.485373e-01	ci left: 3.114563e-02	ci right 3.619113e-02	k: 672	n:20000
Cons ci ratio: 1.983707e-01	ci left: 1.724818e-02	ci right 2.109342e-02	k: 382	n:20000
KS ci ratio: 1.089881e-01	ci left: 5.742979e-02	ci right 6.409861e-02	k: 1214	n:20000
SLC25A37   20000 perm   4 sec   (5507 perm/sec)   p_kst 6.070000e-02   p_cons 1.910000e-02   p_joint 3.360000e-02

Joint ci ratio: 1.326147e-01	ci left: 2.642037e-02	ci right 3.020505e-02	k: 848	n:30000
Cons ci ratio: 1.613273e-01	ci left: 1.774120e-02	ci right 2.088620e-02	k: 578	n:30000
KS ci ratio: 9.120750e-02	ci left: 5.534861e-02	ci right 6.067072e-02	k: 1739	n:30000
SLC25A37   30000 perm   6 sec   (5252 perm/sec)   p_kst 5.796667e-02   p_cons 1.926667e-02   p_joint 2.826667e-02

Joint ci ratio: 1.431559e-01	ci left: 1.708140e-02	ci right 1.973917e-02	k: 735	n:40000
Cons ci ratio: 1.371109e-01	ci left: 1.865045e-02	ci right 2.141984e-02	k: 800	n:40000
KS ci ratio: 7.823924e-02	ci left: 5.673504e-02	ci right 6.137923e-02	k: 2361	n:40000
SLC25A37   40000 perm   8 sec   (5094 perm/sec)   p_kst 5.902500e-02   p_cons 2.000000e-02   p_joint 1.837500e-02

Joint ci ratio: 9.243444e-02	ci left: 3.311286e-02	ci right 3.634145e-02	k: 1735	n:50000
Cons ci ratio: 1.219081e-01	ci left: 1.902359e-02	ci right 2.151254e-02	k: 1012	n:50000
KS ci ratio: 7.009939e-02	ci left: 5.679298e-02	ci right 6.093842e-02	k: 2942	n:50000
SLC25A37   50000 perm   10 sec   (4963 perm/sec)   p_kst 5.884000e-02   p_cons 2.024000e-02   p_joint 3.470000e-02

Joint ci ratio: 9.197724e-02	ci left: 2.803022e-02	ci right 3.074889e-02	k: 1762	n:60000
Cons ci ratio: 1.115021e-01	ci left: 1.905681e-02	ci right 2.132327e-02	k: 1210	n:60000
KS ci ratio: 6.218385e-02	ci left: 6.018182e-02	ci right 6.406067e-02	k: 3726	n:60000
SLC25A37   60000 perm   12 sec   (4849 perm/sec)   p_kst 6.210000e-02   p_cons 2.016667e-02   p_joint 2.936667e-02

Joint ci ratio: 7.963432e-02	ci left: 3.212320e-02	ci right 3.480137e-02	k: 2341	n:70000
Cons ci ratio: 1.035995e-01	ci left: 1.900352e-02	ci right 2.109368e-02	k: 1402	n:70000
KS ci ratio: 5.789239e-02	ci left: 5.968906e-02	ci right 6.326169e-02	k: 4302	n:70000
SLC25A37   70000 perm   15 sec   (4759 perm/sec)   p_kst 6.145714e-02   p_cons 2.002857e-02   p_joint 3.344286e-02

Joint ci ratio: 7.363545e-02	ci left: 3.295128e-02	ci right 3.548265e-02	k: 2736	n:80000
Cons ci ratio: 9.676790e-02	ci left: 1.912647e-02	ci right 2.108355e-02	k: 1607	n:80000
KS ci ratio: 5.405226e-02	ci left: 6.001767e-02	ci right 6.336420e-02	k: 4934	n:80000
SLC25A37   80000 perm   17 sec   (4664 perm/sec)   p_kst 6.167500e-02   p_cons 2.008750e-02   p_joint 3.420000e-02

Outputting figure to mutsig2_images.part000000000159/SLC25A37.4_1033_80000_0.061675_0.020088_0.0342.png
                gene_name: SLC25A37
               theta_stop: 0.097 
                    nperm: 80000 
                     p_ks: 0.062 
        ci_ks_bounds_left: 0.060 
       ci_ks_bounds_right: 0.063 
                   p_cons: 0.020 
      ci_cons_bounds_left: 0.019 
     ci_cons_bounds_right: 0.021 
                  p_joint: 0.034 
     ci_joint_bounds_left: 0.033 
    ci_joint_bounds_right: 0.035 

Current progress: 34 percent done.
SLC26A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.262554e-03	ci left: 9.719600e-01	ci right 9.781590e-01	k: 9752	n:10000
KS ci ratio: 2.846609e-02	ci left: 6.452870e-01	ci right 6.640228e-01	k: 6547	n:10000
SLC26A4   10000 perm   2 sec   (5529 perm/sec)   p_kst 6.547000e-01   p_cons 9.752000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000159/SLC26A4.4_2423_10000_0.6547_0.9752_1.png
                gene_name: SLC26A4
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 36 percent done.
SLC27A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.082690e-02	ci left: 4.697655e-01	ci right 4.894464e-01	k: 4796	n:10000
Cons ci ratio: 1.559459e-02	ci left: 8.565131e-01	ci right 8.700745e-01	k: 8634	n:10000
KS ci ratio: 7.499060e-02	ci left: 2.064889e-01	ci right 2.226777e-01	k: 2145	n:10000
SLC27A5   10000 perm   2 sec   (6384 perm/sec)   p_kst 2.145000e-01   p_cons 8.634000e-01   p_joint 4.796000e-01

Outputting figure to mutsig2_images.part000000000159/SLC27A5.4_2113_10000_0.2145_0.8634_0.4796.png
                gene_name: SLC27A5
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 39 percent done.
SLC20A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.321448e-02	ci left: 1.739892e-01	ci right 1.891967e-01	k: 1815	n:10000
Cons ci ratio: 7.470260e-02	ci left: 2.077708e-01	ci right 2.239950e-01	k: 2158	n:10000
KS ci ratio: 1.100425e-01	ci left: 1.063704e-01	ci right 1.188563e-01	k: 1125	n:10000
SLC20A1   10000 perm   2 sec   (6040 perm/sec)   p_kst 1.125000e-01   p_cons 2.158000e-01   p_joint 1.815000e-01

Joint ci ratio: 7.343592e-02	ci left: 1.201019e-01	ci right 1.293076e-01	k: 2493	n:20000
Cons ci ratio: 5.307420e-02	ci left: 2.085805e-01	ci right 2.200027e-01	k: 4285	n:20000
KS ci ratio: 7.666701e-02	ci left: 1.111506e-01	ci right 1.200615e-01	k: 2311	n:20000
SLC20A1   20000 perm   4 sec   (5411 perm/sec)   p_kst 1.155500e-01   p_cons 2.142500e-01   p_joint 1.246500e-01

Outputting figure to mutsig2_images.part000000000159/SLC20A1.3_2080_20000_0.11555_0.21425_0.12465.png
                gene_name: SLC20A1
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 41 percent done.
SLC22A10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.361933e-01	ci left: 7.126753e-02	ci right 8.178074e-02	k: 764	n:10000
Cons ci ratio: 1.905474e-01	ci left: 3.672071e-02	ci right 4.454977e-02	k: 405	n:10000
KS ci ratio: 1.047174e-01	ci left: 1.164278e-01	ci right 1.293928e-01	k: 1228	n:10000
SLC22A10   10000 perm   2 sec   (6274 perm/sec)   p_kst 1.228000e-01   p_cons 4.050000e-02   p_joint 7.640000e-02

Joint ci ratio: 1.688184e-01	ci left: 2.403039e-02	ci right 2.850878e-02	k: 524	n:20000
Cons ci ratio: 1.301312e-01	ci left: 4.056926e-02	ci right 4.626445e-02	k: 867	n:20000
KS ci ratio: 7.374025e-02	ci left: 1.192162e-01	ci right 1.283935e-01	k: 2475	n:20000
SLC22A10   20000 perm   4 sec   (5587 perm/sec)   p_kst 1.237500e-01   p_cons 4.335000e-02   p_joint 2.620000e-02

Joint ci ratio: 1.222558e-01	ci left: 3.110427e-02	ci right 3.518680e-02	k: 993	n:30000
Cons ci ratio: 1.072028e-01	ci left: 4.037492e-02	ci right 4.498084e-02	k: 1279	n:30000
KS ci ratio: 6.045075e-02	ci left: 1.192047e-01	ci right 1.266685e-01	k: 3687	n:30000
SLC22A10   30000 perm   6 sec   (5319 perm/sec)   p_kst 1.229000e-01   p_cons 4.263333e-02   p_joint 3.310000e-02

Joint ci ratio: 1.219634e-01	ci left: 2.363758e-02	ci right 2.673187e-02	k: 1006	n:40000
Cons ci ratio: 9.340425e-02	ci left: 4.020171e-02	ci right 4.416510e-02	k: 1686	n:40000
KS ci ratio: 5.217276e-02	ci left: 1.204390e-01	ci right 1.269158e-01	k: 4946	n:40000
SLC22A10   40000 perm   8 sec   (5149 perm/sec)   p_kst 1.236500e-01   p_cons 4.215000e-02   p_joint 2.515000e-02

Joint ci ratio: 8.248230e-02	ci left: 4.143453e-02	ci right 4.501874e-02	k: 2160	n:50000
Cons ci ratio: 8.366265e-02	ci left: 4.029762e-02	ci right 4.383579e-02	k: 2102	n:50000
KS ci ratio: 4.635631e-02	ci left: 1.222120e-01	ci right 1.280316e-01	k: 6255	n:50000
SLC22A10   50000 perm   10 sec   (5013 perm/sec)   p_kst 1.251000e-01   p_cons 4.204000e-02   p_joint 4.320000e-02

Outputting figure to mutsig2_images.part000000000159/SLC22A10.3_1666_50000_0.1251_0.04204_0.0432.png
                gene_name: SLC22A10
               theta_stop: 0.084 
                    nperm: 50000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.042 
      ci_cons_bounds_left: 0.040 
     ci_cons_bounds_right: 0.044 
                  p_joint: 0.043 
     ci_joint_bounds_left: 0.041 
    ci_joint_bounds_right: 0.045 

Current progress: 43 percent done.
SLC22A13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.204988e-02	ci left: 5.896176e-01	ci right 6.089245e-01	k: 5993	n:10000
KS ci ratio: 3.282282e-02	ci left: 5.780780e-01	ci right 5.974708e-01	k: 5878	n:10000
SLC22A13   10000 perm   2 sec   (6399 perm/sec)   p_kst 5.878000e-01   p_cons 5.993000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000159/SLC22A13.3_1696_10000_0.5878_0.5993_1.png
                gene_name: SLC22A13
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 45 percent done.
SLC22A7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.596451e-02	ci left: 5.330750e-01	ci right 5.527000e-01	k: 5429	n:10000
Cons ci ratio: 2.082487e-02	ci left: 7.716487e-01	ci right 7.879880e-01	k: 7799	n:10000
KS ci ratio: 6.270362e-02	ci left: 2.721060e-01	ci right 2.898218e-01	k: 2809	n:10000
SLC22A7   10000 perm   2 sec   (6234 perm/sec)   p_kst 2.809000e-01   p_cons 7.799000e-01   p_joint 5.429000e-01

Outputting figure to mutsig2_images.part000000000159/SLC22A7.3_1687_10000_0.2809_0.7799_0.5429.png
                gene_name: SLC22A7
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 48 percent done.
SLC25A10
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.165822e-02	ci left: 9.132737e-01	ci right 9.240809e-01	k: 9188	n:10000
Cons ci ratio: 7.341162e-03	ci left: 9.624696e-01	ci right 9.696556e-01	k: 9662	n:10000
KS ci ratio: 1.566719e-02	ci left: 8.553907e-01	ci right 8.689975e-01	k: 8623	n:10000
SLC25A10   10000 perm   1 sec   (6824 perm/sec)   p_kst 8.623000e-01   p_cons 9.662000e-01   p_joint 9.188000e-01

Outputting figure to mutsig2_images.part000000000159/SLC25A10.2_908_10000_0.8623_0.9662_0.9188.png
                gene_name: SLC25A10
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 50 percent done.
SLC25A18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.568287e-02	ci left: 5.369808e-01	ci right 5.565920e-01	k: 5468	n:10000
Cons ci ratio: 5.505688e-02	ci left: 3.270391e-01	ci right 3.456564e-01	k: 3363	n:10000
KS ci ratio: 4.404582e-02	ci left: 4.321347e-01	ci right 4.516992e-01	k: 4419	n:10000
SLC25A18   10000 perm   2 sec   (6603 perm/sec)   p_kst 4.419000e-01   p_cons 3.363000e-01   p_joint 5.468000e-01

Outputting figure to mutsig2_images.part000000000159/SLC25A18.3_984_10000_0.4419_0.3363_0.5468.png
                gene_name: SLC25A18
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 52 percent done.
SLC25A31
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.916568e-02	ci left: 1.890467e-01	ci right 2.047302e-01	k: 1968	n:10000
Cons ci ratio: 7.223301e-02	ci left: 2.192151e-01	ci right 2.357440e-01	k: 2274	n:10000
KS ci ratio: 7.314920e-02	ci left: 2.148731e-01	ci right 2.312886e-01	k: 2230	n:10000
SLC25A31   10000 perm   2 sec   (6427 perm/sec)   p_kst 2.230000e-01   p_cons 2.274000e-01   p_joint 1.968000e-01

Outputting figure to mutsig2_images.part000000000159/SLC25A31.3_972_10000_0.223_0.2274_0.1968.png
                gene_name: SLC25A31
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 55 percent done.
SLC25A38
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.077830e-02	ci left: 1.828443e-01	ci right 1.983364e-01	k: 1905	n:10000
Cons ci ratio: 2.077029e-02	ci left: 7.725604e-01	ci right 7.888758e-01	k: 7808	n:10000
KS ci ratio: 1.390683e-01	ci left: 6.846013e-02	ci right 7.878990e-02	k: 735	n:10000
SLC25A38   10000 perm   1 sec   (7126 perm/sec)   p_kst 7.350000e-02   p_cons 7.808000e-01   p_joint 1.905000e-01

Joint ci ratio: 5.809124e-02	ci left: 1.800351e-01	ci right 1.908565e-01	k: 3708	n:20000
Cons ci ratio: 1.509362e-02	ci left: 7.654151e-01	ci right 7.771060e-01	k: 15426	n:20000
KS ci ratio: 9.936204e-02	ci left: 6.860155e-02	ci right 7.582341e-02	k: 1443	n:20000
SLC25A38   20000 perm   3 sec   (6158 perm/sec)   p_kst 7.215000e-02   p_cons 7.713000e-01   p_joint 1.854000e-01

Outputting figure to mutsig2_images.part000000000159/SLC25A38.3_943_20000_0.07215_0.7713_0.1854.png
                gene_name: SLC25A38
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.076 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 57 percent done.
SLC26A10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.224432e-02	ci left: 3.506835e-01	ci right 3.695981e-01	k: 3601	n:10000
Cons ci ratio: 8.658327e-02	ci left: 1.626846e-01	ci right 1.775081e-01	k: 1700	n:10000
KS ci ratio: 3.026420e-02	ci left: 6.169333e-01	ci right 6.359930e-01	k: 6265	n:10000
SLC26A10   10000 perm   2 sec   (6070 perm/sec)   p_kst 6.265000e-01   p_cons 1.700000e-01   p_joint 3.601000e-01

Outputting figure to mutsig2_images.part000000000159/SLC26A10.3_1748_10000_0.6265_0.17_0.3601.png
                gene_name: SLC26A10
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 59 percent done.
SLC26A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.692213e-02	ci left: 1.616039e-01	ci right 1.763894e-01	k: 1689	n:10000
Cons ci ratio: 7.714643e-02	ci left: 1.972229e-01	ci right 2.131492e-01	k: 2051	n:10000
KS ci ratio: 1.341162e-01	ci left: 7.339876e-02	ci right 8.404819e-02	k: 786	n:10000
SLC26A5   10000 perm   2 sec   (5935 perm/sec)   p_kst 7.860000e-02   p_cons 2.051000e-01   p_joint 1.689000e-01

Joint ci ratio: 9.027595e-02	ci left: 8.224775e-02	ci right 9.007306e-02	k: 1722	n:20000
Cons ci ratio: 5.487967e-02	ci left: 1.976418e-01	ci right 2.088446e-01	k: 4064	n:20000
KS ci ratio: 9.396444e-02	ci left: 7.627639e-02	ci right 8.384623e-02	k: 1600	n:20000
SLC26A5   20000 perm   4 sec   (5283 perm/sec)   p_kst 8.000000e-02   p_cons 2.032000e-01   p_joint 8.610000e-02

Outputting figure to mutsig2_images.part000000000159/SLC26A5.3_2348_20000_0.08_0.2032_0.0861.png
                gene_name: SLC26A5
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.080 
        ci_ks_bounds_left: 0.076 
       ci_ks_bounds_right: 0.084 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.086 
     ci_joint_bounds_left: 0.082 
    ci_joint_bounds_right: 0.090 

Current progress: 61 percent done.
SLC20A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.953441e-02	ci left: 3.754476e-01	ci right 3.946195e-01	k: 3850	n:10000
Cons ci ratio: 2.215508e-02	ci left: 7.493800e-01	ci right 7.662695e-01	k: 7579	n:10000
KS ci ratio: 6.555229e-02	ci left: 2.546878e-01	ci right 2.720503e-01	k: 2633	n:10000
SLC20A2   10000 perm   2 sec   (6247 perm/sec)   p_kst 2.633000e-01   p_cons 7.579000e-01   p_joint 3.850000e-01

Outputting figure to mutsig2_images.part000000000159/SLC20A2.2_1999_10000_0.2633_0.7579_0.385.png
                gene_name: SLC20A2
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.39 

Current progress: 64 percent done.
SLC22A12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.657249e-02	ci left: 8.412196e-01	ci right 8.553769e-01	k: 8484	n:10000
Cons ci ratio: 3.459494e-02	ci left: 5.523091e-01	ci right 5.718547e-01	k: 5621	n:10000
KS ci ratio: 1.556815e-02	ci left: 8.569213e-01	ci right 8.704660e-01	k: 8638	n:10000
SLC22A12   10000 perm   2 sec   (6426 perm/sec)   p_kst 8.638000e-01   p_cons 5.621000e-01   p_joint 8.484000e-01

Outputting figure to mutsig2_images.part000000000159/SLC22A12.2_1702_10000_0.8638_0.5621_0.8484.png
                gene_name: SLC22A12
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 66 percent done.
SLC22A16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.083070e-02	ci left: 1.826474e-01	ci right 1.981334e-01	k: 1903	n:10000
Cons ci ratio: 9.875836e-02	ci left: 1.293382e-01	ci right 1.428746e-01	k: 1360	n:10000
KS ci ratio: 3.973867e-02	ci left: 4.832543e-01	ci right 5.029497e-01	k: 4931	n:10000
SLC22A16   10000 perm   2 sec   (6599 perm/sec)   p_kst 4.931000e-01   p_cons 1.360000e-01   p_joint 1.903000e-01

Outputting figure to mutsig2_images.part000000000159/SLC22A16.2_1766_10000_0.4931_0.136_0.1903.png
                gene_name: SLC22A16
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 68 percent done.
SLC22A23
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.049740e-02	ci left: 6.133161e-01	ci right 6.324122e-01	k: 6229	n:10000
Cons ci ratio: 4.588733e-02	ci left: 4.120947e-01	ci right 4.315508e-01	k: 4218	n:10000
KS ci ratio: 5.440970e-02	ci left: 3.323022e-01	ci right 3.509901e-01	k: 3416	n:10000
SLC22A23   10000 perm   2 sec   (6177 perm/sec)   p_kst 3.416000e-01   p_cons 4.218000e-01   p_joint 6.229000e-01

Outputting figure to mutsig2_images.part000000000159/SLC22A23.2_2101_10000_0.3416_0.4218_0.6229.png
                gene_name: SLC22A23
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 70 percent done.
SLC22A25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.302997e-02	ci left: 7.347196e-01	ci right 7.519384e-01	k: 7434	n:10000
Cons ci ratio: 2.978760e-02	ci left: 6.243702e-01	ci right 6.433517e-01	k: 6339	n:10000
KS ci ratio: 6.353627e-02	ci left: 2.668589e-01	ci right 2.844719e-01	k: 2756	n:10000
SLC22A25   10000 perm   2 sec   (6616 perm/sec)   p_kst 2.756000e-01   p_cons 6.339000e-01   p_joint 7.434000e-01

Outputting figure to mutsig2_images.part000000000159/SLC22A25.2_1680_10000_0.2756_0.6339_0.7434.png
                gene_name: SLC22A25
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 73 percent done.
SLC22A6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.636594e-02	ci left: 8.444801e-01	ci right 8.585145e-01	k: 8516	n:10000
Cons ci ratio: 2.130330e-02	ci left: 7.636486e-01	ci right 7.801928e-01	k: 7720	n:10000
KS ci ratio: 4.430567e-02	ci left: 4.292423e-01	ci right 4.487932e-01	k: 4390	n:10000
SLC22A6   10000 perm   2 sec   (6382 perm/sec)   p_kst 4.390000e-01   p_cons 7.720000e-01   p_joint 8.516000e-01

Outputting figure to mutsig2_images.part000000000159/SLC22A6.2_1732_10000_0.439_0.772_0.8516.png
                gene_name: SLC22A6
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 75 percent done.
SLC23A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.446792e-02	ci left: 4.274473e-01	ci right 4.469893e-01	k: 4372	n:10000
Cons ci ratio: 8.819135e-03	ci left: 9.475226e-01	ci right 9.560117e-01	k: 9519	n:10000
KS ci ratio: 6.141010e-02	ci left: 2.805242e-01	ci right 2.983986e-01	k: 2894	n:10000
SLC23A1   10000 perm   2 sec   (6354 perm/sec)   p_kst 2.894000e-01   p_cons 9.519000e-01   p_joint 4.372000e-01

Outputting figure to mutsig2_images.part000000000159/SLC23A1.2_1865_10000_0.2894_0.9519_0.4372.png
                gene_name: SLC23A1
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 77 percent done.
SLC23A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.453474e-01	ci left: 6.285242e-02	ci right 7.280114e-02	k: 677	n:10000
KS ci ratio: 2.444450e-02	ci left: 7.110866e-01	ci right 7.287851e-01	k: 7200	n:10000
SLC23A2   10000 perm   2 sec   (6469 perm/sec)   p_kst 7.200000e-01   p_cons 6.770000e-02   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 1.008374e-01	ci left: 6.669691e-02	ci right 7.382864e-02	k: 1404	n:20000
KS ci ratio: 1.716954e-02	ci left: 7.164387e-01	ci right 7.288965e-01	k: 14454	n:20000
SLC23A2   20000 perm   4 sec   (5694 perm/sec)   p_kst 7.227000e-01   p_cons 7.020000e-02   p_joint 1

Joint ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
Cons ci ratio: 8.427486e-02	ci left: 6.442489e-02	ci right 7.012592e-02	k: 2017	n:30000
KS ci ratio: 1.396651e-02	ci left: 7.191045e-01	ci right 7.292520e-01	k: 21726	n:30000
SLC23A2   30000 perm   6 sec   (5439 perm/sec)   p_kst 7.242000e-01   p_cons 6.723333e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000159/SLC23A2.2_2013_30000_0.7242_0.067233_1.png
                gene_name: SLC23A2
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.067 
      ci_cons_bounds_left: 0.064 
     ci_cons_bounds_right: 0.070 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
SLC24A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.827576e-02	ci left: 1.925924e-01	ci right 2.083825e-01	k: 2004	n:10000
Cons ci ratio: 1.306344e-01	ci left: 7.717981e-02	ci right 8.806479e-02	k: 825	n:10000
KS ci ratio: 3.023188e-02	ci left: 6.174357e-01	ci right 6.364903e-01	k: 6270	n:10000
SLC24A3   10000 perm   2 sec   (5958 perm/sec)   p_kst 6.270000e-01   p_cons 8.250000e-02   p_joint 2.004000e-01

Joint ci ratio: 3.109104e-02	ci left: 4.358997e-01	ci right 4.497169e-01	k: 8856	n:20000
Cons ci ratio: 8.433034e-02	ci left: 9.337356e-02	ci right 1.016439e-01	k: 1949	n:20000
KS ci ratio: 2.137362e-02	ci left: 6.203550e-01	ci right 6.338080e-01	k: 12542	n:20000
SLC24A3   20000 perm   4 sec   (5411 perm/sec)   p_kst 6.271000e-01   p_cons 9.745000e-02   p_joint 4.428000e-01

Outputting figure to mutsig2_images.part000000000159/SLC24A3.2_2003_20000_0.6271_0.09745_0.4428.png
                gene_name: SLC24A3
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.097 
      ci_cons_bounds_left: 0.093 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.45 

Current progress: 82 percent done.
SLC25A12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.958849e-02	ci left: 7.922262e-01	ci right 8.079986e-01	k: 8002	n:10000
Cons ci ratio: 1.666896e-02	ci left: 8.396916e-01	ci right 8.539057e-01	k: 8469	n:10000
KS ci ratio: 2.476599e-02	ci left: 7.057380e-01	ci right 7.235368e-01	k: 7147	n:10000
SLC25A12   10000 perm   2 sec   (6188 perm/sec)   p_kst 7.147000e-01   p_cons 8.469000e-01   p_joint 8.002000e-01

Outputting figure to mutsig2_images.part000000000159/SLC25A12.2_2109_10000_0.7147_0.8469_0.8002.png
                gene_name: SLC25A12
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 84 percent done.
SLC25A24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.785336e-02	ci left: 5.075522e-01	ci right 5.272376e-01	k: 5174	n:10000
KS ci ratio: 2.201022e-02	ci left: 7.518078e-01	ci right 7.686403e-01	k: 7603	n:10000
SLC25A24   10000 perm   2 sec   (6464 perm/sec)   p_kst 7.603000e-01   p_cons 5.174000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000159/SLC25A24.2_1604_10000_0.7603_0.5174_1.png
                gene_name: SLC25A24
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
SLC25A25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.975457e-02	ci left: 4.830544e-01	ci right 5.027497e-01	k: 4929	n:10000
Cons ci ratio: 5.612182e-02	ci left: 3.186009e-01	ci right 3.370994e-01	k: 3278	n:10000
KS ci ratio: 9.687168e-02	ci left: 1.338424e-01	ci right 1.475676e-01	k: 1406	n:10000
SLC25A25   10000 perm   2 sec   (6303 perm/sec)   p_kst 1.406000e-01   p_cons 3.278000e-01   p_joint 4.929000e-01

Outputting figure to mutsig2_images.part000000000159/SLC25A25.2_1938_10000_0.1406_0.3278_0.4929.png
                gene_name: SLC25A25
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 89 percent done.
SLC25A33
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.906036e-02	ci left: 8.009530e-01	ci right 8.164667e-01	k: 8088	n:10000
Cons ci ratio: 4.062302e-02	ci left: 4.722629e-01	ci right 4.919476e-01	k: 4821	n:10000
KS ci ratio: 8.117314e-02	ci left: 1.813680e-01	ci right 1.968136e-01	k: 1890	n:10000
SLC25A33   10000 perm   1 sec   (6801 perm/sec)   p_kst 1.890000e-01   p_cons 4.821000e-01   p_joint 8.088000e-01

Outputting figure to mutsig2_images.part000000000159/SLC25A33.2_994_10000_0.189_0.4821_0.8088.png
                gene_name: SLC25A33
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 91 percent done.
SLC25A35
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.691682e-02	ci left: 5.200602e-01	ci right 5.397224e-01	k: 5299	n:10000
Cons ci ratio: 1.475129e-02	ci left: 8.693806e-01	ci right 8.823995e-01	k: 8760	n:10000
KS ci ratio: 7.516901e-02	ci left: 2.057000e-01	ci right 2.218670e-01	k: 2137	n:10000
SLC25A35   10000 perm   1 sec   (7066 perm/sec)   p_kst 2.137000e-01   p_cons 8.760000e-01   p_joint 5.299000e-01

Outputting figure to mutsig2_images.part000000000159/SLC25A35.2_912_10000_0.2137_0.876_0.5299.png
                gene_name: SLC25A35
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 93 percent done.
SLC25A40
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.267779e-02	ci left: 3.469066e-01	ci right 3.657772e-01	k: 3563	n:10000
KS ci ratio: 7.667657e-02	ci left: 1.991939e-01	ci right 2.151771e-01	k: 2071	n:10000
SLC25A40   10000 perm   1 sec   (6946 perm/sec)   p_kst 2.071000e-01   p_cons 3.563000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000159/SLC25A40.2_1057_10000_0.2071_0.3563_1.png
                gene_name: SLC25A40
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
SLC25A41
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.198959e-02	ci left: 4.557846e-01	ci right 4.754354e-01	k: 4656	n:10000
KS ci ratio: 2.443237e-02	ci left: 7.112884e-01	ci right 7.289832e-01	k: 7202	n:10000
SLC25A41   10000 perm   1 sec   (6735 perm/sec)   p_kst 7.202000e-01   p_cons 4.656000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000159/SLC25A41.2_1141_10000_0.7202_0.4656_1.png
                gene_name: SLC25A41
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
SLC27A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.117529e-02	ci left: 9.195597e-01	ci right 9.299912e-01	k: 9249	n:10000
Cons ci ratio: 1.391704e-01	ci left: 6.836336e-02	ci right 7.868673e-02	k: 734	n:10000
KS ci ratio: 1.503491e-02	ci left: 8.650892e-01	ci right 8.782934e-01	k: 8718	n:10000
SLC27A4   10000 perm   2 sec   (6514 perm/sec)   p_kst 8.718000e-01   p_cons 7.340000e-02   p_joint 9.249000e-01

Joint ci ratio: 7.925852e-03	ci left: 9.207003e-01	ci right 9.280757e-01	k: 18489	n:20000
Cons ci ratio: 9.906657e-02	ci left: 6.899234e-02	ci right 7.623250e-02	k: 1451	n:20000
KS ci ratio: 1.064220e-02	ci left: 8.668339e-01	ci right 8.761579e-01	k: 17431	n:20000
SLC27A4   20000 perm   3 sec   (5771 perm/sec)   p_kst 8.715500e-01   p_cons 7.255000e-02   p_joint 9.244500e-01

Outputting figure to mutsig2_images.part000000000159/SLC27A4.2_1980_20000_0.87155_0.07255_0.92445.png
                gene_name: SLC27A4
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.073 
      ci_cons_bounds_left: 0.069 
     ci_cons_bounds_right: 0.076 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000159
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 159 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1431>
Subject: Job 8004548: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1431>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000160> was used as the working directory.
Started at Sun Nov 11 15:17:43 2012
Results reported at Sun Nov 11 15:29:15 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000160.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000160.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 160  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000160.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    799.63 sec.
    Max Memory :      4753 MB
    Max Swap   :      7119 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
160
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 160
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 160: processing genes 14386 - 14475
Calculating significance of each gene.
Using projection method.
14386	SLC28A1	1.309027e-02
14387	SLC28A2	8.831930e-01
14388	SLC28A3	9.545105e-01
14389	SLC29A1	6.860747e-01
14390	SLC29A2	1
14391	SLC29A3	1
14392	SLC29A4	6.639110e-01
14393	SLC2A1	7.289152e-01
14394	SLC2A10	1
14395	SLC2A11	4.896118e-01
14396	SLC2A12	1
14397	SLC2A13	1
14398	SLC2A14	7.382446e-01
14399	SLC2A2	2.697196e-01
14400	SLC2A3	6.755970e-02
14401	SLC2A4	7.318174e-01
14402	SLC2A4RG	4.553251e-01
14403	SLC2A5	6.852899e-01
14404	SLC2A6	6.627385e-01
14405	SLC2A7	4.244062e-01
14406	SLC2A8	1
14407	SLC2A9	6.630591e-01
14408	SLC30A1	1
14409	SLC30A10	5.592802e-01
14410	SLC30A2	2.218940e-01
14411	SLC30A3	9.792779e-02
14412	SLC30A4	2.836528e-01
14413	SLC30A5	8.077654e-01
14414	SLC30A6	3.342524e-01
14415	SLC30A7	4.123086e-01
14416	SLC30A8	5.857289e-01
14417	SLC30A9	1
14418	SLC31A1	2.075803e-01
14419	SLC31A2	1
14420	SLC32A1	8.772846e-01
14421	SLC33A1	2.216362e-01
14422	SLC34A1	9.639620e-01
14423	SLC34A2	3.589903e-01
14424	SLC34A3	4.345202e-01
14425	SLC35A1	6.224322e-01
14426	SLC35A2	1.857207e-01
14427	SLC35A3	1.820549e-01
14428	SLC35A4	8.010144e-01
14429	SLC35A5	1
14430	SLC35B1	1
14431	SLC35B2	1
14432	SLC35B3	1
14433	SLC35B4	1
14434	SLC35C1	3.670805e-01
14435	SLC35C2	7.284570e-01
14436	SLC35D1	1
14437	SLC35D2	1
14438	SLC35D3	1
14439	SLC35E1	5.210891e-01
14440	SLC35E2	2.132242e-01
14441	SLC35E3	1
14442	SLC35E4	4.193058e-01
14443	SLC35F1	1.243919e-02
14444	SLC35F2	7.186240e-01
14445	SLC35F3	1
14446	SLC35F4	5.831702e-01
14447	SLC35F5	1
14448	SLC36A1	7.719064e-01
14449	SLC36A2	1
14450	SLC36A3	7.094408e-01
14451	SLC36A4	1.306491e-02
14452	SLC37A1	6.622794e-01
14453	SLC37A2	6.695475e-01
14454	SLC37A3	5.995638e-01
14455	SLC37A4	1
14456	SLC38A1	3.614304e-01
14457	SLC38A10	9.891088e-01
14458	SLC38A11	6.219266e-01
14459	SLC38A2	6.848026e-01
14460	SLC38A3	6.719214e-01
14461	SLC38A4	5.925078e-01
14462	SLC38A5	2.497801e-01
14463	SLC38A6	5.829522e-01
14464	SLC38A7	1
14465	SLC38A8	8.339330e-01
14466	SLC38A9	7.503703e-01
14467	SLC39A1	2.335977e-01
14468	SLC39A10	1
14469	SLC39A11	5.341470e-01
14470	SLC39A12	1.053588e-02
14471	SLC39A13	1
14472	SLC39A14	6.982842e-01
14473	SLC39A2	5.679594e-01
14474	SLC39A3	5.632091e-01
14475	SLC39A4	5.989534e-01
Done

Running MutSig 2:
Scatter job 160: processing genes 14386 - 14475
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SLC39A12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.721013e-02	ci left: 3.983455e-01	ci right 4.177081e-01	k: 4080	n:10000
Cons ci ratio: 8.117314e-02	ci left: 1.813680e-01	ci right 1.968136e-01	k: 1890	n:10000
KS ci ratio: 4.870791e-02	ci left: 3.834095e-01	ci right 4.026528e-01	k: 3930	n:10000
SLC39A12   10000 perm   2 sec   (4069 perm/sec)   p_kst 3.930000e-01   p_cons 1.890000e-01   p_joint 4.080000e-01

Outputting figure to mutsig2_images.part000000000160/SLC39A12.11_2124_10000_0.393_0.189_0.408.png
                gene_name: SLC39A12
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 2 percent done.
SLC28A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.506606e-01	ci left: 5.860517e-02	ci right 6.825107e-02	k: 633	n:10000
Cons ci ratio: 3.350785e-01	ci left: 1.123901e-02	ci right 1.585081e-02	k: 134	n:10000
KS ci ratio: 9.219358e-02	ci left: 1.459962e-01	ci right 1.602065e-01	k: 1530	n:10000
SLC28A1   10000 perm   2 sec   (4596 perm/sec)   p_kst 1.530000e-01   p_cons 1.340000e-02   p_joint 6.330000e-02

Joint ci ratio: 1.441613e-01	ci left: 3.307475e-02	ci right 3.826138e-02	k: 712	n:20000
Cons ci ratio: 2.234803e-01	ci left: 1.345565e-02	ci right 1.688741e-02	k: 302	n:20000
KS ci ratio: 6.587906e-02	ci left: 1.454227e-01	ci right 1.553792e-01	k: 3007	n:20000
SLC28A1   20000 perm   5 sec   (4277 perm/sec)   p_kst 1.503500e-01   p_cons 1.510000e-02   p_joint 3.560000e-02

Joint ci ratio: 1.254227e-01	ci left: 2.955233e-02	ci right 3.353907e-02	k: 945	n:30000
Cons ci ratio: 1.791977e-01	ci left: 1.429182e-02	ci right 1.713642e-02	k: 470	n:30000
KS ci ratio: 5.375526e-02	ci left: 1.465042e-01	ci right 1.546303e-01	k: 4516	n:30000
SLC28A1   30000 perm   7 sec   (4143 perm/sec)   p_kst 1.505333e-01   p_cons 1.566667e-02   p_joint 3.150000e-02

Joint ci ratio: 9.851486e-02	ci left: 3.619623e-02	ci right 3.997121e-02	k: 1522	n:40000
Cons ci ratio: 1.576307e-01	ci left: 1.402381e-02	ci right 1.644731e-02	k: 608	n:40000
KS ci ratio: 4.652930e-02	ci left: 1.471822e-01	ci right 1.542185e-01	k: 6027	n:40000
SLC28A1   40000 perm   10 sec   (4065 perm/sec)   p_kst 1.506750e-01   p_cons 1.520000e-02   p_joint 3.805000e-02

Joint ci ratio: 8.296498e-02	ci left: 4.096404e-02	ci right 4.452929e-02	k: 2136	n:50000
Cons ci ratio: 1.398053e-01	ci left: 1.439680e-02	ci right 1.657997e-02	k: 773	n:50000
KS ci ratio: 4.152957e-02	ci left: 1.480901e-01	ci right 1.543905e-01	k: 7561	n:50000
SLC28A1   50000 perm   12 sec   (4000 perm/sec)   p_kst 1.512200e-01   p_cons 1.546000e-02   p_joint 4.272000e-02

Joint ci ratio: 7.569635e-02	ci left: 4.116153e-02	ci right 4.441621e-02	k: 2566	n:60000
Cons ci ratio: 1.263049e-01	ci left: 1.480119e-02	ci right 1.681270e-02	k: 947	n:60000
KS ci ratio: 3.796887e-02	ci left: 1.479783e-01	ci right 1.537222e-01	k: 9050	n:60000
SLC28A1   60000 perm   15 sec   (3934 perm/sec)   p_kst 1.508333e-01   p_cons 1.578333e-02   p_joint 4.276667e-02

Joint ci ratio: 7.407065e-02	ci left: 3.704463e-02	ci right 3.990808e-02	k: 2692	n:70000
Cons ci ratio: 1.171511e-01	ci left: 1.481982e-02	ci right 1.667778e-02	k: 1101	n:70000
KS ci ratio: 3.511224e-02	ci left: 1.484826e-01	ci right 1.538035e-01	k: 10579	n:70000
SLC28A1   70000 perm   18 sec   (3870 perm/sec)   p_kst 1.511286e-01   p_cons 1.572857e-02   p_joint 3.845714e-02

Joint ci ratio: 6.480376e-02	ci left: 4.231835e-02	ci right 4.516486e-02	k: 3498	n:80000
Cons ci ratio: 1.162037e-01	ci left: 1.320940e-02	ci right 1.485112e-02	k: 1121	n:80000
KS ci ratio: 3.292061e-02	ci left: 1.480660e-01	ci right 1.530344e-01	k: 12043	n:80000
SLC28A1   80000 perm   21 sec   (3802 perm/sec)   p_kst 1.505375e-01   p_cons 1.401250e-02   p_joint 4.372500e-02

Joint ci ratio: 5.704947e-02	ci left: 4.842067e-02	ci right 5.127510e-02	k: 4485	n:90000
Cons ci ratio: 1.093933e-01	ci left: 1.329660e-02	ci right 1.484606e-02	k: 1265	n:90000
KS ci ratio: 3.095654e-02	ci left: 1.488763e-01	ci right 1.535685e-01	k: 13609	n:90000
SLC28A1   90000 perm   24 sec   (3739 perm/sec)   p_kst 1.512111e-01   p_cons 1.405556e-02   p_joint 4.983333e-02

Joint ci ratio: 5.398778e-02	ci left: 4.872636e-02	ci right 5.143981e-02	k: 5007	n:100000
Cons ci ratio: 1.031738e-01	ci left: 1.349530e-02	ci right 1.497307e-02	k: 1422	n:100000
KS ci ratio: 2.939915e-02	ci left: 1.487263e-01	ci right 1.531739e-01	k: 15094	n:100000
SLC28A1   100000 perm   27 sec   (3676 perm/sec)   p_kst 1.509400e-01   p_cons 1.422000e-02   p_joint 5.007000e-02

Joint ci ratio: 5.611254e-02	ci left: 4.128852e-02	ci right 4.368114e-02	k: 4672	n:110000
Cons ci ratio: 9.796998e-02	ci left: 1.364216e-02	ci right 1.505634e-02	k: 1577	n:110000
KS ci ratio: 2.805837e-02	ci left: 1.485815e-01	ci right 1.528188e-01	k: 16576	n:110000
SLC28A1   110000 perm   30 sec   (3620 perm/sec)   p_kst 1.506909e-01   p_cons 1.433636e-02   p_joint 4.247273e-02

Outputting figure to mutsig2_images.part000000000160/SLC28A1.8_2089_110000_0.15069_0.014336_0.042473.png
                gene_name: SLC28A1
               theta_stop: 0.098 
                    nperm: 110000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.014 
      ci_cons_bounds_left: 0.014 
     ci_cons_bounds_right: 0.015 
                  p_joint: 0.042 
     ci_joint_bounds_left: 0.041 
    ci_joint_bounds_right: 0.044 

Current progress: 4 percent done.
SLC30A8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.415472e-02	ci left: 8.782779e-01	ci right 8.908971e-01	k: 8847	n:10000
KS ci ratio: 6.856483e-03	ci left: 9.668882e-01	ci right 9.736342e-01	k: 9704	n:10000
SLC30A8   10000 perm   2 sec   (5960 perm/sec)   p_kst 9.704000e-01   p_cons 8.847000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000160/SLC30A8.6_1142_10000_0.9704_0.8847_1.png
                gene_name: SLC30A8
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 6 percent done.
SLC36A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.917451e-02	ci left: 6.340217e-01	ci right 6.528946e-01	k: 6435	n:10000
Cons ci ratio: 5.780619e-02	ci left: 3.058014e-01	ci right 3.241065e-01	k: 3149	n:10000
KS ci ratio: 3.640140e-02	ci left: 5.270673e-01	ci right 5.467112e-01	k: 5369	n:10000
SLC36A4   10000 perm   2 sec   (5067 perm/sec)   p_kst 5.369000e-01   p_cons 3.149000e-01   p_joint 6.435000e-01

Outputting figure to mutsig2_images.part000000000160/SLC36A4.6_1559_10000_0.5369_0.3149_0.6435.png
                gene_name: SLC36A4
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 8 percent done.
SLC2A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.421642e-01	ci left: 3.799572e-03	ci right 6.700171e-03	k: 51	n:10000
Cons ci ratio: 5.474812e-01	ci left: 3.713306e-03	ci right 6.586626e-03	k: 50	n:10000
KS ci ratio: 8.464158e-02	ci left: 1.690728e-01	ci right 1.841161e-01	k: 1765	n:10000
SLC2A3   10000 perm   2 sec   (5462 perm/sec)   p_kst 1.765000e-01   p_cons 5.000000e-03   p_joint 5.100000e-03

Joint ci ratio: 2.110880e-01	ci left: 1.515911e-02	ci right 1.878328e-02	k: 338	n:20000
Cons ci ratio: 4.077371e-01	ci left: 3.664911e-03	ci right 5.583495e-03	k: 91	n:20000
KS ci ratio: 6.015161e-02	ci left: 1.698553e-01	ci right 1.804393e-01	k: 3502	n:20000
SLC2A3   20000 perm   4 sec   (4775 perm/sec)   p_kst 1.751000e-01   p_cons 4.550000e-03   p_joint 1.690000e-02

Joint ci ratio: 1.782389e-01	ci left: 1.445114e-02	ci right 1.731040e-02	k: 475	n:30000
Cons ci ratio: 3.236258e-01	ci left: 4.080135e-03	ci right 5.684730e-03	k: 145	n:30000
KS ci ratio: 4.923028e-02	ci left: 1.701542e-01	ci right 1.787756e-01	k: 5233	n:30000
SLC2A3   30000 perm   7 sec   (4596 perm/sec)   p_kst 1.744333e-01   p_cons 4.833333e-03   p_joint 1.583333e-02

Joint ci ratio: 1.655371e-01	ci left: 1.267965e-02	ci right 1.499172e-02	k: 552	n:40000
Cons ci ratio: 2.837070e-01	ci left: 4.076631e-03	ci right 5.446791e-03	k: 189	n:40000
KS ci ratio: 4.257444e-02	ci left: 1.711388e-01	ci right 1.786084e-01	k: 6994	n:40000
SLC2A3   40000 perm   9 sec   (4403 perm/sec)   p_kst 1.748500e-01   p_cons 4.725000e-03   p_joint 1.380000e-02

Joint ci ratio: 1.174309e-01	ci left: 2.051841e-02	ci right 2.309753e-02	k: 1089	n:50000
Cons ci ratio: 2.567603e-01	ci left: 4.044513e-03	ci right 5.254105e-03	k: 231	n:50000
KS ci ratio: 3.817972e-02	ci left: 1.707853e-01	ci right 1.774526e-01	k: 8705	n:50000
SLC2A3   50000 perm   12 sec   (4309 perm/sec)   p_kst 1.741000e-01   p_cons 4.620000e-03   p_joint 2.178000e-02

Joint ci ratio: 1.037259e-01	ci left: 2.204272e-02	ci right 2.447036e-02	k: 1394	n:60000
Cons ci ratio: 2.354110e-01	ci left: 4.058617e-03	ci right 5.156815e-03	k: 275	n:60000
KS ci ratio: 3.488392e-02	ci left: 1.708251e-01	ci right 1.769065e-01	k: 10431	n:60000
SLC2A3   60000 perm   14 sec   (4201 perm/sec)   p_kst 1.738500e-01   p_cons 4.583333e-03   p_joint 2.323333e-02

Joint ci ratio: 9.595621e-02	ci left: 2.216722e-02	ci right 2.441539e-02	k: 1629	n:70000
Cons ci ratio: 2.143016e-01	ci left: 4.247370e-03	ci right 5.280055e-03	k: 332	n:70000
KS ci ratio: 3.260915e-02	ci left: 1.683167e-01	ci right 1.739106e-01	k: 11977	n:70000
SLC2A3   70000 perm   17 sec   (4135 perm/sec)   p_kst 1.711000e-01   p_cons 4.742857e-03   p_joint 2.327143e-02

Joint ci ratio: 8.488933e-02	ci left: 2.485927e-02	ci right 2.707529e-02	k: 2076	n:80000
Cons ci ratio: 1.992992e-01	ci left: 4.332844e-03	ci right 5.303603e-03	k: 384	n:80000
KS ci ratio: 3.046569e-02	ci left: 1.688440e-01	ci right 1.740799e-01	k: 13716	n:80000
SLC2A3   80000 perm   20 sec   (4058 perm/sec)   p_kst 1.714500e-01   p_cons 4.800000e-03   p_joint 2.595000e-02

Joint ci ratio: 8.029282e-02	ci left: 2.476309e-02	ci right 2.684540e-02	k: 2321	n:90000
Cons ci ratio: 1.881469e-01	ci left: 4.348330e-03	ci right 5.261815e-03	k: 431	n:90000
KS ci ratio: 2.871393e-02	ci left: 1.690866e-01	ci right 1.740235e-01	k: 15439	n:90000
SLC2A3   90000 perm   23 sec   (3981 perm/sec)   p_kst 1.715444e-01   p_cons 4.788889e-03   p_joint 2.578889e-02

Joint ci ratio: 7.950970e-02	ci left: 2.278566e-02	ci right 2.468211e-02	k: 2372	n:100000
Cons ci ratio: 1.790550e-01	ci left: 4.342822e-03	ci right 5.206288e-03	k: 476	n:100000
KS ci ratio: 2.720174e-02	ci left: 1.696158e-01	ci right 1.743032e-01	k: 17195	n:100000
SLC2A3   100000 perm   26 sec   (3918 perm/sec)   p_kst 1.719500e-01   p_cons 4.760000e-03   p_joint 2.372000e-02

Joint ci ratio: 7.695421e-02	ci left: 2.215787e-02	ci right 2.394013e-02	k: 2534	n:110000
Cons ci ratio: 1.718281e-01	ci left: 4.304377e-03	ci right 5.122074e-03	k: 517	n:110000
KS ci ratio: 2.596204e-02	ci left: 1.694394e-01	ci right 1.739052e-01	k: 18883	n:110000
SLC2A3   110000 perm   29 sec   (3842 perm/sec)   p_kst 1.716636e-01   p_cons 4.700000e-03   p_joint 2.303636e-02

Joint ci ratio: 7.220128e-02	ci left: 2.310866e-02	ci right 2.484778e-02	k: 2876	n:120000
Cons ci ratio: 1.642345e-01	ci left: 4.336852e-03	ci right 5.120712e-03	k: 566	n:120000
KS ci ratio: 2.481369e-02	ci left: 1.700261e-01	ci right 1.743064e-01	k: 20659	n:120000
SLC2A3   120000 perm   32 sec   (3786 perm/sec)   p_kst 1.721583e-01   p_cons 4.716667e-03   p_joint 2.396667e-02

Joint ci ratio: 7.048608e-02	ci left: 2.241872e-02	ci right 2.406418e-02	k: 3020	n:130000
Cons ci ratio: 1.586042e-01	ci left: 4.305889e-03	ci right 5.054931e-03	k: 607	n:130000
KS ci ratio: 2.384966e-02	ci left: 1.699980e-01	ci right 1.741090e-01	k: 22366	n:130000
SLC2A3   130000 perm   35 sec   (3734 perm/sec)   p_kst 1.720462e-01   p_cons 4.669231e-03   p_joint 2.323077e-02

Joint ci ratio: 6.737692e-02	ci left: 2.281115e-02	ci right 2.440867e-02	k: 3304	n:140000
Cons ci ratio: 1.538735e-01	ci left: 4.259135e-03	ci right 4.975906e-03	k: 645	n:140000
KS ci ratio: 2.301995e-02	ci left: 1.696069e-01	ci right 1.735638e-01	k: 24021	n:140000
SLC2A3   140000 perm   38 sec   (3681 perm/sec)   p_kst 1.715786e-01   p_cons 4.607143e-03   p_joint 2.360000e-02

Joint ci ratio: 6.611360e-02	ci left: 2.214235e-02	ci right 2.366283e-02	k: 3434	n:150000
Cons ci ratio: 1.472879e-01	ci left: 4.353726e-03	ci right 5.052298e-03	k: 704	n:150000
KS ci ratio: 2.224923e-02	ci left: 1.695490e-01	ci right 1.733704e-01	k: 25718	n:150000
SLC2A3   150000 perm   41 sec   (3629 perm/sec)   p_kst 1.714533e-01   p_cons 4.693333e-03   p_joint 2.289333e-02

Joint ci ratio: 6.157283e-02	ci left: 2.394499e-02	ci right 2.547230e-02	k: 3952	n:160000
Cons ci ratio: 1.422314e-01	ci left: 4.388831e-03	ci right 5.066808e-03	k: 755	n:160000
KS ci ratio: 2.151840e-02	ci left: 1.699297e-01	ci right 1.736322e-01	k: 27484	n:160000
SLC2A3   160000 perm   45 sec   (3563 perm/sec)   p_kst 1.717750e-01   p_cons 4.718750e-03   p_joint 2.470000e-02

Joint ci ratio: 6.031909e-02	ci left: 2.350947e-02	ci right 2.497740e-02	k: 4120	n:170000
Cons ci ratio: 1.389659e-01	ci left: 4.334971e-03	ci right 4.987980e-03	k: 791	n:170000
KS ci ratio: 2.064029e-02	ci left: 1.732257e-01	ci right 1.768442e-01	k: 29755	n:170000
SLC2A3   170000 perm   49 sec   (3502 perm/sec)   p_kst 1.750294e-01   p_cons 4.652941e-03   p_joint 2.423529e-02

Joint ci ratio: 6.026350e-02	ci left: 2.227409e-02	ci right 2.366355e-02	k: 4133	n:180000
Cons ci ratio: 1.355049e-01	ci left: 4.314094e-03	ci right 4.946468e-03	k: 832	n:180000
KS ci ratio: 2.005889e-02	ci left: 1.732748e-01	ci right 1.767912e-01	k: 31505	n:180000
SLC2A3   180000 perm   52 sec   (3456 perm/sec)   p_kst 1.750278e-01   p_cons 4.622222e-03   p_joint 2.296111e-02

Joint ci ratio: 5.914120e-02	ci left: 2.193119e-02	ci right 2.327291e-02	k: 4293	n:190000
Cons ci ratio: 1.325955e-01	ci left: 4.275237e-03	ci right 4.887398e-03	k: 869	n:190000
KS ci ratio: 1.953362e-02	ci left: 1.731785e-01	ci right 1.765999e-01	k: 33228	n:190000
SLC2A3   190000 perm   56 sec   (3409 perm/sec)   p_kst 1.748842e-01   p_cons 4.573684e-03   p_joint 2.259474e-02

Joint ci ratio: 5.964552e-02	ci left: 2.050908e-02	ci right 2.177486e-02	k: 4227	n:200000
Cons ci ratio: 1.285901e-01	ci left: 4.327499e-03	ci right 4.926998e-03	k: 924	n:200000
KS ci ratio: 1.904526e-02	ci left: 1.731278e-01	ci right 1.764617e-01	k: 34958	n:200000
SLC2A3   200000 perm   59 sec   (3364 perm/sec)   p_kst 1.747900e-01   p_cons 4.620000e-03   p_joint 2.113500e-02

Joint ci ratio: 5.778005e-02	ci left: 2.082754e-02	ci right 2.207143e-02	k: 4503	n:210000
Cons ci ratio: 1.255073e-01	ci left: 4.333515e-03	ci right 4.918384e-03	k: 970	n:210000
KS ci ratio: 1.869156e-02	ci left: 1.715504e-01	ci right 1.747919e-01	k: 36365	n:210000
SLC2A3   210000 perm   63 sec   (3318 perm/sec)   p_kst 1.731667e-01   p_cons 4.619048e-03   p_joint 2.144286e-02

Joint ci ratio: 5.812583e-02	ci left: 1.966547e-02	ci right 2.084722e-02	k: 4455	n:220000
Cons ci ratio: 1.225152e-01	ci left: 4.347952e-03	ci right 4.919765e-03	k: 1018	n:220000
KS ci ratio: 1.827130e-02	ci left: 1.714396e-01	ci right 1.746054e-01	k: 38064	n:220000
SLC2A3   220000 perm   67 sec   (3274 perm/sec)   p_kst 1.730182e-01   p_cons 4.627273e-03   p_joint 2.025000e-02

Joint ci ratio: 5.446484e-02	ci left: 2.142584e-02	ci right 2.262973e-02	k: 5065	n:230000
Cons ci ratio: 1.202378e-01	ci left: 4.323324e-03	ci right 4.880578e-03	k: 1057	n:230000
KS ci ratio: 1.787463e-02	ci left: 1.713955e-01	ci right 1.744910e-01	k: 39776	n:230000
SLC2A3   230000 perm   71 sec   (3227 perm/sec)   p_kst 1.729391e-01   p_cons 4.595652e-03   p_joint 2.202174e-02

Joint ci ratio: 5.495767e-02	ci left: 2.018753e-02	ci right 2.133242e-02	k: 4981	n:240000
Cons ci ratio: 1.177062e-01	ci left: 4.329149e-03	ci right 4.874588e-03	k: 1103	n:240000
KS ci ratio: 1.748744e-02	ci left: 1.716049e-01	ci right 1.746364e-01	k: 41548	n:240000
SLC2A3   240000 perm   75 sec   (3184 perm/sec)   p_kst 1.731167e-01   p_cons 4.595833e-03   p_joint 2.075417e-02

Joint ci ratio: 5.314351e-02	ci left: 2.073364e-02	ci right 2.186950e-02	k: 5324	n:250000
Cons ci ratio: 1.152275e-01	ci left: 4.342392e-03	ci right 4.877193e-03	k: 1151	n:250000
KS ci ratio: 1.712484e-02	ci left: 1.717902e-01	ci right 1.747614e-01	k: 43318	n:250000
SLC2A3   250000 perm   80 sec   (3143 perm/sec)   p_kst 1.732720e-01   p_cons 4.604000e-03   p_joint 2.129600e-02

Joint ci ratio: 5.265817e-02	ci left: 2.031940e-02	ci right 2.142209e-02	k: 5425	n:260000
Cons ci ratio: 1.125696e-01	ci left: 4.380894e-03	ci right 4.907165e-03	k: 1206	n:260000
KS ci ratio: 1.678075e-02	ci left: 1.720155e-01	ci right 1.749303e-01	k: 45102	n:260000
SLC2A3   260000 perm   84 sec   (3102 perm/sec)   p_kst 1.734692e-01   p_cons 4.638462e-03   p_joint 2.086538e-02

Joint ci ratio: 5.067562e-02	ci left: 2.113176e-02	ci right 2.223410e-02	k: 5853	n:270000
Cons ci ratio: 1.109745e-01	ci left: 4.344639e-03	ci right 4.858676e-03	k: 1241	n:270000
KS ci ratio: 1.645829e-02	ci left: 1.721951e-01	ci right 1.750563e-01	k: 46878	n:270000
SLC2A3   270000 perm   88 sec   (3061 perm/sec)   p_kst 1.736222e-01   p_cons 4.596296e-03   p_joint 2.167778e-02

Joint ci ratio: 5.032378e-02	ci left: 2.067667e-02	ci right 2.174756e-02	k: 5938	n:280000
Cons ci ratio: 1.087629e-01	ci left: 4.366614e-03	ci right 4.872295e-03	k: 1292	n:280000
KS ci ratio: 1.616922e-02	ci left: 1.720883e-01	ci right 1.748970e-01	k: 48577	n:280000
SLC2A3   280000 perm   93 sec   (3023 perm/sec)   p_kst 1.734893e-01   p_cons 4.614286e-03   p_joint 2.120714e-02

Joint ci ratio: 4.959745e-02	ci left: 2.056296e-02	ci right 2.161215e-02	k: 6114	n:290000
Cons ci ratio: 1.069587e-01	ci left: 4.363671e-03	ci right 4.860101e-03	k: 1336	n:290000
KS ci ratio: 1.588264e-02	ci left: 1.722093e-01	ci right 1.749697e-01	k: 50340	n:290000
SLC2A3   290000 perm   97 sec   (2985 perm/sec)   p_kst 1.735862e-01   p_cons 4.606897e-03   p_joint 2.108276e-02

Joint ci ratio: 4.818672e-02	ci left: 2.106299e-02	ci right 2.210628e-02	k: 6474	n:300000
Cons ci ratio: 1.055876e-01	ci left: 4.331778e-03	ci right 4.817869e-03	k: 1371	n:300000
KS ci ratio: 1.561784e-02	ci left: 1.721930e-01	ci right 1.749067e-01	k: 52064	n:300000
SLC2A3   300000 perm   102 sec   (2948 perm/sec)   p_kst 1.735467e-01   p_cons 4.570000e-03   p_joint 2.158000e-02

Joint ci ratio: 4.743879e-02	ci left: 2.104011e-02	ci right 2.206564e-02	k: 6680	n:310000
Cons ci ratio: 1.037506e-01	ci left: 4.345971e-03	ci right 4.824653e-03	k: 1420	n:310000
KS ci ratio: 1.535395e-02	ci left: 1.724000e-01	ci right 1.750706e-01	k: 53857	n:310000
SLC2A3   310000 perm   106 sec   (2912 perm/sec)   p_kst 1.737323e-01   p_cons 4.580645e-03   p_joint 2.154839e-02

Joint ci ratio: 4.674545e-02	ci left: 2.100023e-02	ci right 2.200846e-02	k: 6880	n:320000
Cons ci ratio: 1.026040e-01	ci left: 4.307574e-03	ci right 4.776468e-03	k: 1452	n:320000
KS ci ratio: 1.511615e-02	ci left: 1.723451e-01	ci right 1.749733e-01	k: 55570	n:320000
SLC2A3   320000 perm   111 sec   (2877 perm/sec)   p_kst 1.736563e-01   p_cons 4.537500e-03   p_joint 2.150000e-02

Joint ci ratio: 4.639056e-02	ci left: 2.068725e-02	ci right 2.167270e-02	k: 6988	n:330000
Cons ci ratio: 1.014260e-01	ci left: 4.277440e-03	ci right 4.737389e-03	k: 1486	n:330000
KS ci ratio: 1.487775e-02	ci left: 1.725115e-01	ci right 1.751003e-01	k: 57355	n:330000
SLC2A3   330000 perm   116 sec   (2841 perm/sec)   p_kst 1.738030e-01   p_cons 4.503030e-03   p_joint 2.117576e-02

Joint ci ratio: 4.503307e-02	ci left: 2.130885e-02	ci right 2.229344e-02	k: 7411	n:340000
Cons ci ratio: 9.976188e-02	ci left: 4.294994e-03	ci right 4.748809e-03	k: 1536	n:340000
KS ci ratio: 1.465644e-02	ci left: 1.725481e-01	ci right 1.750986e-01	k: 59099	n:340000
SLC2A3   340000 perm   121 sec   (2805 perm/sec)   p_kst 1.738206e-01   p_cons 4.517647e-03   p_joint 2.179706e-02

Outputting figure to mutsig2_images.part000000000160/SLC2A3.5_1531_340000_0.17382_0.0045176_0.021797.png
                gene_name: SLC2A3
               theta_stop: 0.100 
                    nperm: 340000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.0045 
      ci_cons_bounds_left: 0.0043 
     ci_cons_bounds_right: 0.0047 
                  p_joint: 0.022 
     ci_joint_bounds_left: 0.021 
    ci_joint_bounds_right: 0.022 

Current progress: 10 percent done.
SLC35F1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.151886e-02	ci left: 1.800887e-01	ci right 1.954937e-01	k: 1877	n:10000
Cons ci ratio: 5.087845e-02	ci left: 3.629130e-01	ci right 3.819614e-01	k: 3724	n:10000
KS ci ratio: 1.227782e-01	ci left: 8.679344e-02	ci right 9.824521e-02	k: 924	n:10000
SLC35F1   10000 perm   2 sec   (5598 perm/sec)   p_kst 9.240000e-02   p_cons 3.724000e-01   p_joint 1.877000e-01

Joint ci ratio: 7.016245e-02	ci left: 1.302431e-01	ci right 1.397633e-01	k: 2699	n:20000
Cons ci ratio: 3.619277e-02	ci left: 3.629545e-01	ci right 3.763835e-01	k: 7393	n:20000
KS ci ratio: 8.702652e-02	ci left: 8.807791e-02	ci right 9.614113e-02	k: 1841	n:20000
SLC35F1   20000 perm   4 sec   (4924 perm/sec)   p_kst 9.205000e-02   p_cons 3.696500e-01   p_joint 1.349500e-01

Outputting figure to mutsig2_images.part000000000160/SLC35F1.5_1259_20000_0.09205_0.36965_0.13495.png
                gene_name: SLC35F1
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.092 
        ci_ks_bounds_left: 0.088 
       ci_ks_bounds_right: 0.096 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 12 percent done.
SLC2A13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.516236e-02	ci left: 8.631486e-01	ci right 8.764352e-01	k: 8699	n:10000
Cons ci ratio: 3.763418e-02	ci left: 5.104535e-01	ci right 5.301346e-01	k: 5203	n:10000
KS ci ratio: 2.701897e-02	ci left: 6.686406e-01	ci right 6.870556e-01	k: 6779	n:10000
SLC2A13   10000 perm   2 sec   (5461 perm/sec)   p_kst 6.779000e-01   p_cons 5.203000e-01   p_joint 8.699000e-01

Outputting figure to mutsig2_images.part000000000160/SLC2A13.4_1987_10000_0.6779_0.5203_0.8699.png
                gene_name: SLC2A13
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.88 

Current progress: 15 percent done.
SLC30A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.519581e-02	ci left: 8.626380e-01	ci right 8.759461e-01	k: 8694	n:10000
Cons ci ratio: 3.729637e-02	ci left: 5.149562e-01	ci right 5.346293e-01	k: 5248	n:10000
KS ci ratio: 3.304679e-02	ci left: 5.747677e-01	ci right 5.941831e-01	k: 5845	n:10000
SLC30A3   10000 perm   1 sec   (6749 perm/sec)   p_kst 5.845000e-01   p_cons 5.248000e-01   p_joint 8.694000e-01

Outputting figure to mutsig2_images.part000000000160/SLC30A3.4_1199_10000_0.5845_0.5248_0.8694.png
                gene_name: SLC30A3
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.88 

Current progress: 17 percent done.
SLC34A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.326693e-02	ci left: 2.685418e-01	ci right 2.861881e-01	k: 2773	n:10000
Cons ci ratio: 1.221143e-02	ci left: 9.058655e-01	ci right 9.170934e-01	k: 9116	n:10000
KS ci ratio: 1.075295e-01	ci left: 1.109577e-01	ci right 1.236661e-01	k: 1172	n:10000
SLC34A2   10000 perm   2 sec   (5378 perm/sec)   p_kst 1.172000e-01   p_cons 9.116000e-01   p_joint 2.773000e-01

Joint ci ratio: 4.037390e-02	ci left: 3.138350e-01	ci right 3.268173e-01	k: 6406	n:20000
Cons ci ratio: 8.699987e-03	ci left: 9.063059e-01	ci right 9.142744e-01	k: 18207	n:20000
KS ci ratio: 7.640568e-02	ci left: 1.118388e-01	ci right 1.207730e-01	k: 2325	n:20000
SLC34A2   20000 perm   4 sec   (4830 perm/sec)   p_kst 1.162500e-01   p_cons 9.103500e-01   p_joint 3.203000e-01

Outputting figure to mutsig2_images.part000000000160/SLC34A2.4_2121_20000_0.11625_0.91035_0.3203.png
                gene_name: SLC34A2
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 19 percent done.
SLC28A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.151493e-02	ci left: 7.601055e-01	ci right 7.767378e-01	k: 7685	n:10000
KS ci ratio: 3.159811e-02	ci left: 5.964436e-01	ci right 6.156946e-01	k: 6061	n:10000
SLC28A2   10000 perm   2 sec   (5685 perm/sec)   p_kst 6.061000e-01   p_cons 7.685000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000160/SLC28A2.3_2045_10000_0.6061_0.7685_1.png
                gene_name: SLC28A2
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 21 percent done.
SLC2A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.238453e-02	ci left: 5.845997e-01	ci right 6.039453e-01	k: 5943	n:10000
KS ci ratio: 1.531595e-02	ci left: 8.608001e-01	ci right 8.741851e-01	k: 8676	n:10000
SLC2A2   10000 perm   2 sec   (6075 perm/sec)   p_kst 8.676000e-01   p_cons 5.943000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000160/SLC2A2.3_1619_10000_0.8676_0.5943_1.png
                gene_name: SLC2A2
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 23 percent done.
SLC30A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.574653e-02	ci left: 4.135897e-01	ci right 4.330550e-01	k: 4233	n:10000
Cons ci ratio: 6.842438e-02	ci left: 2.385720e-01	ci right 2.555756e-01	k: 2470	n:10000
KS ci ratio: 5.360916e-02	ci left: 3.389574e-01	ci right 3.577310e-01	k: 3483	n:10000
SLC30A2   10000 perm   2 sec   (6205 perm/sec)   p_kst 3.483000e-01   p_cons 2.470000e-01   p_joint 4.233000e-01

Outputting figure to mutsig2_images.part000000000160/SLC30A2.3_1151_10000_0.3483_0.247_0.4233.png
                gene_name: SLC30A2
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 25 percent done.
SLC30A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.425669e-02	ci left: 7.142157e-01	ci right 7.318542e-01	k: 7231	n:10000
Cons ci ratio: 5.557882e-02	ci left: 3.228692e-01	ci right 3.414287e-01	k: 3321	n:10000
KS ci ratio: 4.526275e-02	ci left: 4.187729e-01	ci right 4.382688e-01	k: 4285	n:10000
SLC30A4   10000 perm   2 sec   (6020 perm/sec)   p_kst 4.285000e-01   p_cons 3.321000e-01   p_joint 7.231000e-01

Outputting figure to mutsig2_images.part000000000160/SLC30A4.3_1318_10000_0.4285_0.3321_0.7231.png
                gene_name: SLC30A4
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 27 percent done.
SLC32A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.633558e-02	ci left: 5.279684e-01	ci right 5.476096e-01	k: 5378	n:10000
Cons ci ratio: 1.098941e-02	ci left: 9.219324e-01	ci right 9.322172e-01	k: 9272	n:10000
KS ci ratio: 4.683115e-02	ci left: 4.022303e-01	ci right 4.216210e-01	k: 4119	n:10000
SLC32A1   10000 perm   2 sec   (6290 perm/sec)   p_kst 4.119000e-01   p_cons 9.272000e-01   p_joint 5.378000e-01

Outputting figure to mutsig2_images.part000000000160/SLC32A1.3_1586_10000_0.4119_0.9272_0.5378.png
                gene_name: SLC32A1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 29 percent done.
SLC33A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.600981e-02	ci left: 4.107992e-01	ci right 4.302471e-01	k: 4205	n:10000
Cons ci ratio: 6.380780e-02	ci left: 2.651762e-01	ci right 2.827556e-01	k: 2739	n:10000
KS ci ratio: 5.000832e-02	ci left: 3.709701e-01	ci right 3.900995e-01	k: 3805	n:10000
SLC33A1   10000 perm   2 sec   (5878 perm/sec)   p_kst 3.805000e-01   p_cons 2.739000e-01   p_joint 4.205000e-01

Outputting figure to mutsig2_images.part000000000160/SLC33A1.3_1674_10000_0.3805_0.2739_0.4205.png
                gene_name: SLC33A1
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 31 percent done.
SLC38A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.373928e-02	ci left: 3.378646e-01	ci right 3.566244e-01	k: 3472	n:10000
Cons ci ratio: 9.312912e-02	ci left: 1.434464e-01	ci right 1.575578e-01	k: 1504	n:10000
KS ci ratio: 4.433266e-02	ci left: 4.289432e-01	ci right 4.484926e-01	k: 4387	n:10000
SLC38A1   10000 perm   2 sec   (6013 perm/sec)   p_kst 4.387000e-01   p_cons 1.504000e-01   p_joint 3.472000e-01

Outputting figure to mutsig2_images.part000000000160/SLC38A1.3_1524_10000_0.4387_0.1504_0.3472.png
                gene_name: SLC38A1
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 33 percent done.
SLC38A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.427694e-02	ci left: 3.333947e-01	ci right 3.520970e-01	k: 3427	n:10000
Cons ci ratio: 2.042418e-02	ci left: 7.783356e-01	ci right 7.944972e-01	k: 7865	n:10000
KS ci ratio: 1.330186e-01	ci left: 7.456177e-02	ci right 8.528446e-02	k: 798	n:10000
SLC38A5   10000 perm   2 sec   (5634 perm/sec)   p_kst 7.980000e-02   p_cons 7.865000e-01   p_joint 3.427000e-01

Joint ci ratio: 5.330378e-02	ci left: 2.071447e-01	ci right 2.185389e-01	k: 4256	n:20000
Cons ci ratio: 1.448061e-02	ci left: 7.798459e-01	ci right 7.912710e-01	k: 15712	n:20000
KS ci ratio: 9.460828e-02	ci left: 7.529807e-02	ci right 8.282484e-02	k: 1580	n:20000
SLC38A5   20000 perm   4 sec   (4837 perm/sec)   p_kst 7.900000e-02   p_cons 7.856000e-01   p_joint 2.128000e-01

Outputting figure to mutsig2_images.part000000000160/SLC38A5.3_1479_20000_0.079_0.7856_0.2128.png
                gene_name: SLC38A5
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.079 
        ci_ks_bounds_left: 0.075 
       ci_ks_bounds_right: 0.083 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 35 percent done.
SLC38A8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.966982e-02	ci left: 1.870774e-01	ci right 2.027008e-01	k: 1948	n:10000
Cons ci ratio: 1.635851e-01	ci left: 4.984277e-02	ci right 5.881908e-02	k: 542	n:10000
KS ci ratio: 2.317481e-02	ci left: 7.322943e-01	ci right 7.495652e-01	k: 7410	n:10000
SLC38A8   10000 perm   2 sec   (6234 perm/sec)   p_kst 7.410000e-01   p_cons 5.420000e-02   p_joint 1.948000e-01

Joint ci ratio: 5.883244e-02	ci left: 1.762787e-01	ci right 1.870140e-01	k: 3632	n:20000
Cons ci ratio: 1.177528e-01	ci left: 4.940061e-02	ci right 5.563030e-02	k: 1049	n:20000
KS ci ratio: 1.647478e-02	ci left: 7.328036e-01	ci right 7.450269e-01	k: 14779	n:20000
SLC38A8   20000 perm   4 sec   (5431 perm/sec)   p_kst 7.389500e-01   p_cons 5.245000e-02   p_joint 1.816000e-01

Joint ci ratio: 4.646259e-02	ci left: 1.872920e-01	ci right 1.962344e-01	k: 5752	n:30000
Cons ci ratio: 9.576109e-02	ci left: 5.036128e-02	ci right 5.545908e-02	k: 1586	n:30000
KS ci ratio: 1.292839e-02	ci left: 7.490518e-01	ci right 7.588323e-01	k: 22619	n:30000
SLC38A8   30000 perm   6 sec   (5130 perm/sec)   p_kst 7.539667e-01   p_cons 5.286667e-02   p_joint 1.917333e-01

Outputting figure to mutsig2_images.part000000000160/SLC38A8.3_1348_30000_0.75397_0.052867_0.19173.png
                gene_name: SLC38A8
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.053 
      ci_cons_bounds_left: 0.050 
     ci_cons_bounds_right: 0.055 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 38 percent done.
SLC39A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.343944e-01	ci left: 7.310807e-02	ci right 8.373906e-02	k: 783	n:10000
Cons ci ratio: 2.644396e-01	ci left: 1.865372e-02	ci right 2.442970e-02	k: 214	n:10000
KS ci ratio: 4.421586e-02	ci left: 4.302397e-01	ci right 4.497953e-01	k: 4400	n:10000
SLC39A1   10000 perm   2 sec   (6475 perm/sec)   p_kst 4.400000e-01   p_cons 2.140000e-02   p_joint 7.830000e-02

Joint ci ratio: 9.579764e-02	ci left: 7.353756e-02	ci right 8.098590e-02	k: 1544	n:20000
Cons ci ratio: 1.816657e-01	ci left: 2.068037e-02	ci right 2.485997e-02	k: 454	n:20000
KS ci ratio: 3.163874e-02	ci left: 4.273157e-01	ci right 4.411034e-01	k: 8684	n:20000
SLC39A1   20000 perm   4 sec   (5597 perm/sec)   p_kst 4.342000e-01   p_cons 2.270000e-02   p_joint 7.720000e-02

Joint ci ratio: 8.825665e-02	ci left: 5.897053e-02	ci right 6.444807e-02	k: 1850	n:30000
Cons ci ratio: 1.475034e-01	ci left: 2.130123e-02	ci right 2.472534e-02	k: 689	n:30000
KS ci ratio: 2.597260e-02	ci left: 4.259522e-01	ci right 4.371944e-01	k: 12947	n:30000
SLC39A1   30000 perm   6 sec   (5312 perm/sec)   p_kst 4.315667e-01   p_cons 2.296667e-02   p_joint 6.166667e-02

Joint ci ratio: 8.928329e-02	ci left: 4.391867e-02	ci right 4.804756e-02	k: 1838	n:40000
Cons ci ratio: 1.286758e-01	ci left: 2.121417e-02	ci right 2.415569e-02	k: 906	n:40000
KS ci ratio: 2.247799e-02	ci left: 4.270383e-01	ci right 4.367715e-01	k: 17276	n:40000
SLC39A1   40000 perm   8 sec   (5136 perm/sec)   p_kst 4.319000e-01   p_cons 2.265000e-02   p_joint 4.595000e-02

Joint ci ratio: 7.220875e-02	ci left: 5.364663e-02	ci right 5.768515e-02	k: 2782	n:50000
Cons ci ratio: 1.146139e-01	ci left: 2.154829e-02	ci right 2.418751e-02	k: 1142	n:50000
KS ci ratio: 2.012150e-02	ci left: 4.271528e-01	ci right 4.358552e-01	k: 21575	n:50000
SLC39A1   50000 perm   10 sec   (4990 perm/sec)   p_kst 4.315000e-01   p_cons 2.284000e-02   p_joint 5.564000e-02

Joint ci ratio: 6.598644e-02	ci left: 5.371404e-02	ci right 5.739577e-02	k: 3332	n:60000
Cons ci ratio: 1.035361e-01	ci left: 2.212394e-02	ci right 2.455580e-02	k: 1399	n:60000
KS ci ratio: 1.838031e-02	ci left: 4.272157e-01	ci right 4.351576e-01	k: 25871	n:60000
SLC39A1   60000 perm   12 sec   (4873 perm/sec)   p_kst 4.311833e-01   p_cons 2.331667e-02   p_joint 5.553333e-02

Joint ci ratio: 6.105424e-02	ci left: 5.391379e-02	ci right 5.732317e-02	k: 3892	n:70000
Cons ci ratio: 9.595621e-02	ci left: 2.216722e-02	ci right 2.441539e-02	k: 1629	n:70000
KS ci ratio: 1.701090e-02	ci left: 4.276840e-01	ci right 4.350360e-01	k: 30195	n:70000
SLC39A1   70000 perm   15 sec   (4758 perm/sec)   p_kst 4.313571e-01   p_cons 2.327143e-02   p_joint 5.560000e-02

Outputting figure to mutsig2_images.part000000000160/SLC39A1.3_987_70000_0.43136_0.023271_0.0556.png
                gene_name: SLC39A1
               theta_stop: 0.096 
                    nperm: 70000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.023 
      ci_cons_bounds_left: 0.022 
     ci_cons_bounds_right: 0.024 
                  p_joint: 0.056 
     ci_joint_bounds_left: 0.054 
    ci_joint_bounds_right: 0.057 

Current progress: 40 percent done.
SLC39A10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.665833e-02	ci left: 5.235635e-01	ci right 5.432170e-01	k: 5334	n:10000
Cons ci ratio: 2.671020e-02	ci left: 6.736771e-01	ci right 6.920163e-01	k: 6829	n:10000
KS ci ratio: 5.085669e-02	ci left: 3.631119e-01	ci right 3.821624e-01	k: 3726	n:10000
SLC39A10   10000 perm   2 sec   (5189 perm/sec)   p_kst 3.726000e-01   p_cons 6.829000e-01   p_joint 5.334000e-01

Outputting figure to mutsig2_images.part000000000160/SLC39A10.3_2532_10000_0.3726_0.6829_0.5334.png
                gene_name: SLC39A10
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 42 percent done.
SLC29A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.408318e-01	ci left: 6.681548e-02	ci right 7.703558e-02	k: 718	n:10000
Cons ci ratio: 2.264156e-01	ci left: 2.579881e-02	ci right 3.247924e-02	k: 290	n:10000
KS ci ratio: 1.912852e-01	ci left: 3.643453e-02	ci right 4.423614e-02	k: 402	n:10000
SLC29A4   10000 perm   2 sec   (6649 perm/sec)   p_kst 4.020000e-02   p_cons 2.900000e-02   p_joint 7.180000e-02

Joint ci ratio: 9.688928e-02	ci left: 7.197315e-02	ci right 7.935078e-02	k: 1512	n:20000
Cons ci ratio: 1.560097e-01	ci left: 2.820837e-02	ci right 3.302937e-02	k: 611	n:20000
KS ci ratio: 1.326265e-01	ci left: 3.906816e-02	ci right 4.466603e-02	k: 836	n:20000
SLC29A4   20000 perm   3 sec   (5788 perm/sec)   p_kst 4.180000e-02   p_cons 3.055000e-02   p_joint 7.560000e-02

Joint ci ratio: 8.027376e-02	ci left: 7.066994e-02	ci right 7.661294e-02	k: 2208	n:30000
Cons ci ratio: 1.285426e-01	ci left: 2.813091e-02	ci right 3.202747e-02	k: 901	n:30000
KS ci ratio: 1.091778e-01	ci left: 3.894635e-02	ci right 4.347638e-02	k: 1235	n:30000
SLC29A4   30000 perm   6 sec   (5447 perm/sec)   p_kst 4.116667e-02   p_cons 3.003333e-02   p_joint 7.360000e-02

Joint ci ratio: 6.918186e-02	ci left: 7.172378e-02	ci right 7.688822e-02	k: 2971	n:40000
Cons ci ratio: 1.112580e-01	ci left: 2.842294e-02	ci right 3.179574e-02	k: 1203	n:40000
KS ci ratio: 9.452118e-02	ci left: 3.927313e-02	ci right 4.319383e-02	k: 1648	n:40000
SLC29A4   40000 perm   8 sec   (5230 perm/sec)   p_kst 4.120000e-02   p_cons 3.007500e-02   p_joint 7.427500e-02

Joint ci ratio: 5.770299e-02	ci left: 8.205651e-02	ci right 8.695186e-02	k: 4224	n:50000
Cons ci ratio: 9.934239e-02	ci left: 2.869775e-02	ci right 3.171712e-02	k: 1509	n:50000
KS ci ratio: 8.435593e-02	ci left: 3.965092e-02	ci right 4.316257e-02	k: 2069	n:50000
SLC29A4   50000 perm   10 sec   (5065 perm/sec)   p_kst 4.138000e-02   p_cons 3.018000e-02   p_joint 8.448000e-02

Outputting figure to mutsig2_images.part000000000160/SLC29A4.2_1633_50000_0.04138_0.03018_0.08448.png
                gene_name: SLC29A4
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.041 
        ci_ks_bounds_left: 0.040 
       ci_ks_bounds_right: 0.043 
                   p_cons: 0.030 
      ci_cons_bounds_left: 0.029 
     ci_cons_bounds_right: 0.032 
                  p_joint: 0.084 
     ci_joint_bounds_left: 0.082 
    ci_joint_bounds_right: 0.087 

Current progress: 44 percent done.
SLC2A11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.489805e-02	ci left: 5.480002e-01	ci right 5.675661e-01	k: 5578	n:10000
Cons ci ratio: 4.529048e-02	ci left: 4.184738e-01	ci right 4.379680e-01	k: 4282	n:10000
KS ci ratio: 2.366395e-02	ci left: 7.241112e-01	ci right 7.415529e-01	k: 7329	n:10000
SLC2A11   10000 perm   2 sec   (6251 perm/sec)   p_kst 7.329000e-01   p_cons 4.282000e-01   p_joint 5.578000e-01

Outputting figure to mutsig2_images.part000000000160/SLC2A11.2_1619_10000_0.7329_0.4282_0.5578.png
                gene_name: SLC2A11
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 46 percent done.
SLC2A14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.337476e-01	ci left: 7.378639e-02	ci right 8.446032e-02	k: 790	n:10000
Cons ci ratio: 7.184476e-02	ci left: 2.210904e-01	ci right 2.376675e-01	k: 2293	n:10000
KS ci ratio: 1.732451e-01	ci left: 4.446748e-02	ci right 5.299787e-02	k: 486	n:10000
SLC2A14   10000 perm   2 sec   (6309 perm/sec)   p_kst 4.860000e-02   p_cons 2.293000e-01   p_joint 7.900000e-02

Joint ci ratio: 1.079513e-01	ci left: 5.850174e-02	ci right 6.522634e-02	k: 1236	n:20000
Cons ci ratio: 5.269881e-02	ci left: 2.109571e-01	ci right 2.224254e-01	k: 4333	n:20000
KS ci ratio: 1.228373e-01	ci left: 4.546654e-02	ci right 5.146561e-02	k: 968	n:20000
SLC2A14   20000 perm   4 sec   (5538 perm/sec)   p_kst 4.840000e-02   p_cons 2.166500e-01   p_joint 6.180000e-02

Joint ci ratio: 1.019099e-01	ci left: 4.459990e-02	ci right 4.942165e-02	k: 1409	n:30000
Cons ci ratio: 4.304970e-02	ci left: 2.118504e-01	ci right 2.212045e-01	k: 6495	n:30000
KS ci ratio: 1.014203e-01	ci left: 4.502272e-02	ci right 4.986541e-02	k: 1422	n:30000
SLC2A14   30000 perm   6 sec   (5150 perm/sec)   p_kst 4.740000e-02   p_cons 2.165000e-01   p_joint 4.696667e-02

Joint ci ratio: 9.171438e-02	ci left: 4.166844e-02	ci right 4.569814e-02	k: 1746	n:40000
Cons ci ratio: 3.736849e-02	ci left: 2.117023e-01	ci right 2.197890e-01	k: 8629	n:40000
KS ci ratio: 8.900463e-02	ci left: 4.418782e-02	ci right 4.832838e-02	k: 1849	n:40000
SLC2A14   40000 perm   8 sec   (4926 perm/sec)   p_kst 4.622500e-02   p_cons 2.157250e-01   p_joint 4.365000e-02

Outputting figure to mutsig2_images.part000000000160/SLC2A14.2_1603_40000_0.046225_0.21573_0.04365.png
                gene_name: SLC2A14
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.046 
        ci_ks_bounds_left: 0.044 
       ci_ks_bounds_right: 0.048 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.044 
     ci_joint_bounds_left: 0.042 
    ci_joint_bounds_right: 0.046 

Current progress: 48 percent done.
SLC2A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.066901e-02	ci left: 9.259590e-01	ci right 9.359882e-01	k: 9311	n:10000
Cons ci ratio: 2.808310e-02	ci left: 6.514250e-01	ci right 6.700813e-01	k: 6608	n:10000
KS ci ratio: 2.184721e-02	ci left: 7.545395e-01	ci right 7.713071e-01	k: 7630	n:10000
SLC2A4   10000 perm   2 sec   (6092 perm/sec)   p_kst 7.630000e-01   p_cons 6.608000e-01   p_joint 9.311000e-01

Outputting figure to mutsig2_images.part000000000160/SLC2A4.2_1574_10000_0.763_0.6608_0.9311.png
                gene_name: SLC2A4
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 50 percent done.
SLC2A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.672870e-02	ci left: 6.733749e-01	ci right 6.917187e-01	k: 6826	n:10000
KS ci ratio: 2.665473e-02	ci left: 6.745838e-01	ci right 6.929091e-01	k: 6838	n:10000
SLC2A5   10000 perm   2 sec   (6294 perm/sec)   p_kst 6.838000e-01   p_cons 6.826000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000160/SLC2A5.2_1718_10000_0.6838_0.6826_1.png
                gene_name: SLC2A5
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 52 percent done.
SLC2A7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.871463e-02	ci left: 8.066388e-01	ci right 8.219776e-01	k: 8144	n:10000
KS ci ratio: 2.869303e-02	ci left: 6.416654e-01	ci right 6.604465e-01	k: 6511	n:10000
SLC2A7   10000 perm   2 sec   (6395 perm/sec)   p_kst 6.511000e-01   p_cons 8.144000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000160/SLC2A7.2_1587_10000_0.6511_0.8144_1.png
                gene_name: SLC2A7
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 54 percent done.
SLC2A9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.136070e-02	ci left: 3.585374e-01	ci right 3.775395e-01	k: 3680	n:10000
Cons ci ratio: 8.321448e-02	ci left: 1.739892e-01	ci right 1.891967e-01	k: 1815	n:10000
KS ci ratio: 7.625897e-02	ci left: 2.009680e-01	ci right 2.170019e-01	k: 2089	n:10000
SLC2A9   10000 perm   2 sec   (6200 perm/sec)   p_kst 2.089000e-01   p_cons 1.815000e-01   p_joint 3.680000e-01

Outputting figure to mutsig2_images.part000000000160/SLC2A9.2_1738_10000_0.2089_0.1815_0.368.png
                gene_name: SLC2A9
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 56 percent done.
SLC30A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.135979e-01	ci left: 1.003243e-01	ci right 1.125061e-01	k: 1063	n:10000
KS ci ratio: 1.018770e-02	ci left: 9.318524e-01	ci right 9.414913e-01	k: 9368	n:10000
SLC30A5   10000 perm   2 sec   (5667 perm/sec)   p_kst 9.368000e-01   p_cons 1.063000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 7.967941e-02	ci left: 1.036324e-01	ci right 1.122820e-01	k: 2158	n:20000
KS ci ratio: 7.283378e-03	ci left: 9.319557e-01	ci right 9.388171e-01	k: 18709	n:20000
SLC30A5   20000 perm   4 sec   (5010 perm/sec)   p_kst 9.354500e-01   p_cons 1.079000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000160/SLC30A5.2_2450_20000_0.93545_0.1079_1.png
                gene_name: SLC30A5
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 58 percent done.
SLC30A6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.775266e-02	ci left: 3.061982e-01	ci right 3.245095e-01	k: 3153	n:10000
KS ci ratio: 1.313571e-02	ci left: 8.930299e-01	ci right 9.049365e-01	k: 8991	n:10000
SLC30A6   10000 perm   2 sec   (6321 perm/sec)   p_kst 8.991000e-01   p_cons 3.153000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000160/SLC30A6.2_1442_10000_0.8991_0.3153_1.png
                gene_name: SLC30A6
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 60 percent done.
SLC30A7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.503264e-02	ci left: 5.460965e-01	ci right 5.656709e-01	k: 5559	n:10000
Cons ci ratio: 2.363978e-02	ci left: 7.245152e-01	ci right 7.419487e-01	k: 7333	n:10000
KS ci ratio: 5.392946e-02	ci left: 3.362752e-01	ci right 3.550148e-01	k: 3456	n:10000
SLC30A7   10000 perm   2 sec   (6578 perm/sec)   p_kst 3.456000e-01   p_cons 7.333000e-01   p_joint 5.559000e-01

Outputting figure to mutsig2_images.part000000000160/SLC30A7.2_1175_10000_0.3456_0.7333_0.5559.png
                gene_name: SLC30A7
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 62 percent done.
SLC31A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.317518e-02	ci left: 3.426336e-01	ci right 3.614527e-01	k: 3520	n:10000
KS ci ratio: 4.131249e-02	ci left: 4.638726e-01	ci right 4.835427e-01	k: 4737	n:10000
SLC31A1   10000 perm   1 sec   (7521 perm/sec)   p_kst 4.737000e-01   p_cons 3.520000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000160/SLC31A1.2_589_10000_0.4737_0.352_1.png
                gene_name: SLC31A1
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
SLC34A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.800946e-02	ci left: 1.311004e-01	ci right 1.447113e-01	k: 1378	n:10000
Cons ci ratio: 2.011077e-01	ci left: 3.291000e-02	ci right 4.036307e-02	k: 365	n:10000
KS ci ratio: 8.525785e-02	ci left: 1.670085e-01	ci right 1.819816e-01	k: 1744	n:10000
SLC34A3   10000 perm   2 sec   (5703 perm/sec)   p_kst 1.744000e-01   p_cons 3.650000e-02   p_joint 1.378000e-01

Joint ci ratio: 9.486915e-02	ci left: 7.490680e-02	ci right 8.241624e-02	k: 1572	n:20000
Cons ci ratio: 1.423089e-01	ci left: 3.394357e-02	ci right 3.919227e-02	k: 730	n:20000
KS ci ratio: 6.099781e-02	ci left: 1.659038e-01	ci right 1.763920e-01	k: 3422	n:20000
SLC34A3   20000 perm   4 sec   (5007 perm/sec)   p_kst 1.711000e-01   p_cons 3.650000e-02   p_joint 7.860000e-02

Joint ci ratio: 9.541246e-02	ci left: 5.071964e-02	ci right 5.583398e-02	k: 1597	n:30000
Cons ci ratio: 1.175657e-01	ci left: 3.362884e-02	ci right 3.786168e-02	k: 1071	n:30000
KS ci ratio: 4.918476e-02	ci left: 1.704182e-01	ci right 1.790449e-01	k: 5241	n:30000
SLC34A3   30000 perm   6 sec   (4758 perm/sec)   p_kst 1.747000e-01   p_cons 3.570000e-02   p_joint 5.323333e-02

Joint ci ratio: 1.077553e-01	ci left: 3.029677e-02	ci right 3.377160e-02	k: 1280	n:40000
Cons ci ratio: 1.026877e-01	ci left: 3.334221e-02	ci right 3.697568e-02	k: 1405	n:40000
KS ci ratio: 4.271141e-02	ci left: 1.702217e-01	ci right 1.776757e-01	k: 6957	n:40000
SLC34A3   40000 perm   9 sec   (4632 perm/sec)   p_kst 1.739250e-01   p_cons 3.512500e-02   p_joint 3.200000e-02

Joint ci ratio: 8.202711e-02	ci left: 4.188547e-02	ci right 4.548775e-02	k: 2183	n:50000
Cons ci ratio: 9.180625e-02	ci left: 3.356262e-02	ci right 3.681164e-02	k: 1758	n:50000
KS ci ratio: 3.807386e-02	ci left: 1.715792e-01	ci right 1.782586e-01	k: 8745	n:50000
SLC34A3   50000 perm   11 sec   (4504 perm/sec)   p_kst 1.749000e-01   p_cons 3.516000e-02   p_joint 4.366000e-02

Outputting figure to mutsig2_images.part000000000160/SLC34A3.2_1848_50000_0.1749_0.03516_0.04366.png
                gene_name: SLC34A3
               theta_stop: 0.092 
                    nperm: 50000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.035 
      ci_cons_bounds_left: 0.034 
     ci_cons_bounds_right: 0.037 
                  p_joint: 0.044 
     ci_joint_bounds_left: 0.042 
    ci_joint_bounds_right: 0.045 

Current progress: 67 percent done.
SLC35A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.014019e-02	ci left: 2.295818e-01	ci right 2.463711e-01	k: 2379	n:10000
Cons ci ratio: 1.254102e-01	ci left: 8.339227e-02	ci right 9.464849e-02	k: 889	n:10000
KS ci ratio: 4.177090e-02	ci left: 4.583805e-01	ci right 4.780380e-01	k: 4682	n:10000
SLC35A2   10000 perm   2 sec   (6221 perm/sec)   p_kst 4.682000e-01   p_cons 8.890000e-02   p_joint 2.379000e-01

Joint ci ratio: 3.303242e-02	ci left: 4.063139e-01	ci right 4.200114e-01	k: 8263	n:20000
Cons ci ratio: 8.763043e-02	ci left: 8.695066e-02	ci right 9.496872e-02	k: 1818	n:20000
KS ci ratio: 2.928214e-02	ci left: 4.656103e-01	ci right 4.794976e-01	k: 9451	n:20000
SLC35A2   20000 perm   4 sec   (5543 perm/sec)   p_kst 4.725500e-01   p_cons 9.090000e-02   p_joint 4.131500e-01

Outputting figure to mutsig2_images.part000000000160/SLC35A2.2_1367_20000_0.47255_0.0909_0.41315.png
                gene_name: SLC35A2
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.091 
      ci_cons_bounds_left: 0.087 
     ci_cons_bounds_right: 0.095 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.42 

Current progress: 69 percent done.
SLC35A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.941957e-02	ci left: 3.765422e-01	ci right 3.957242e-01	k: 3861	n:10000
Cons ci ratio: 3.942206e-02	ci left: 4.872524e-01	ci right 5.069493e-01	k: 4971	n:10000
KS ci ratio: 3.017006e-01	ci left: 1.409482e-02	ci right 1.919237e-02	k: 165	n:10000
SLC35A3   10000 perm   2 sec   (6573 perm/sec)   p_kst 1.650000e-02   p_cons 4.971000e-01   p_joint 3.861000e-01

Joint ci ratio: 3.483806e-02	ci left: 3.808396e-01	ci right 3.943931e-01	k: 7752	n:20000
Cons ci ratio: 2.671473e-02	ci left: 5.114479e-01	ci right 5.253467e-01	k: 10368	n:20000
KS ci ratio: 2.194697e-01	ci left: 1.397554e-02	ci right 1.746732e-02	k: 313	n:20000
SLC35A3   20000 perm   4 sec   (5572 perm/sec)   p_kst 1.565000e-02   p_cons 5.184000e-01   p_joint 3.876000e-01

Joint ci ratio: 2.825727e-02	ci left: 3.852395e-01	ci right 3.963150e-01	k: 11723	n:30000
Cons ci ratio: 2.177663e-02	ci left: 5.135613e-01	ci right 5.249016e-01	k: 15577	n:30000
KS ci ratio: 1.811615e-01	ci left: 1.397332e-02	ci right 1.678834e-02	k: 460	n:30000
SLC35A3   30000 perm   6 sec   (5335 perm/sec)   p_kst 1.533333e-02   p_cons 5.192333e-01   p_joint 3.907667e-01

Joint ci ratio: 2.441504e-02	ci left: 3.870865e-01	ci right 3.966792e-01	k: 15675	n:40000
Cons ci ratio: 1.897329e-02	ci left: 5.113141e-01	ci right 5.211335e-01	k: 20649	n:40000
KS ci ratio: 1.574994e-01	ci left: 1.404783e-02	ci right 1.647328e-02	k: 609	n:40000
SLC35A3   40000 perm   8 sec   (5138 perm/sec)   p_kst 1.522500e-02   p_cons 5.162250e-01   p_joint 3.918750e-01

Joint ci ratio: 4.954680e-02	ci left: 1.084966e-01	ci right 1.140286e-01	k: 5562	n:50000
Cons ci ratio: 1.693929e-02	ci left: 5.127491e-01	ci right 5.215289e-01	k: 25857	n:50000
KS ci ratio: 1.435233e-01	ci left: 1.364407e-02	ci right 1.577282e-02	k: 734	n:50000
SLC35A3   50000 perm   10 sec   (5017 perm/sec)   p_kst 1.468000e-02   p_cons 5.171400e-01   p_joint 1.112400e-01

Joint ci ratio: 2.006011e-02	ci left: 3.849964e-01	ci right 3.928144e-01	k: 23334	n:60000
Cons ci ratio: 1.549983e-02	ci left: 5.119589e-01	ci right 5.199729e-01	k: 30958	n:60000
KS ci ratio: 1.301969e-01	ci left: 1.391351e-02	ci right 1.586715e-02	k: 892	n:60000
SLC35A3   60000 perm   12 sec   (4906 perm/sec)   p_kst 1.486667e-02   p_cons 5.159667e-01   p_joint 3.889000e-01

Joint ci ratio: 1.855095e-02	ci left: 3.858281e-01	ci right 3.930668e-01	k: 27261	n:70000
Cons ci ratio: 1.436516e-02	ci left: 5.117329e-01	ci right 5.191515e-01	k: 36081	n:70000
KS ci ratio: 1.210611e-01	ci left: 1.386305e-02	ci right 1.566322e-02	k: 1032	n:70000
SLC35A3   70000 perm   15 sec   (4759 perm/sec)   p_kst 1.474286e-02   p_cons 5.154429e-01   p_joint 3.894429e-01

Joint ci ratio: 1.734032e-02	ci left: 3.864058e-01	ci right 3.931772e-01	k: 31183	n:80000
Cons ci ratio: 1.343385e-02	ci left: 5.121052e-01	ci right 5.190437e-01	k: 41246	n:80000
KS ci ratio: 1.143571e-01	ci left: 1.364660e-02	ci right 1.531389e-02	k: 1157	n:80000
SLC35A3   80000 perm   17 sec   (4637 perm/sec)   p_kst 1.446250e-02   p_cons 5.155750e-01   p_joint 3.897875e-01

Joint ci ratio: 1.637230e-02	ci left: 3.859128e-01	ci right 3.922943e-01	k: 35019	n:90000
Cons ci ratio: 1.268384e-02	ci left: 5.115844e-01	ci right 5.181258e-01	k: 46337	n:90000
KS ci ratio: 1.070175e-01	ci left: 1.390221e-02	ci right 1.548485e-02	k: 1321	n:90000
SLC35A3   90000 perm   20 sec   (4552 perm/sec)   p_kst 1.467778e-02   p_cons 5.148556e-01   p_joint 3.891000e-01

Joint ci ratio: 1.551682e-02	ci left: 3.865458e-01	ci right 3.926006e-01	k: 38957	n:100000
Cons ci ratio: 1.203382e-02	ci left: 5.117170e-01	ci right 5.179221e-01	k: 51482	n:100000
KS ci ratio: 1.013469e-01	ci left: 1.399243e-02	ci right 1.549591e-02	k: 1473	n:100000
SLC35A3   100000 perm   22 sec   (4460 perm/sec)   p_kst 1.473000e-02   p_cons 5.148200e-01   p_joint 3.895700e-01

Joint ci ratio: 1.481560e-02	ci left: 3.860175e-01	ci right 3.917883e-01	k: 42779	n:110000
Cons ci ratio: 1.147365e-02	ci left: 5.118689e-01	ci right 5.177849e-01	k: 56631	n:110000
KS ci ratio: 9.670323e-02	ci left: 1.400594e-02	ci right 1.543799e-02	k: 1618	n:110000
SLC35A3   110000 perm   25 sec   (4383 perm/sec)   p_kst 1.470909e-02   p_cons 5.148273e-01   p_joint 3.889000e-01

Outputting figure to mutsig2_images.part000000000160/SLC35A3.2_1006_110000_0.014709_0.51483_0.3889.png
                gene_name: SLC35A3
               theta_stop: 0.097 
                    nperm: 110000 
                     p_ks: 0.015 
        ci_ks_bounds_left: 0.014 
       ci_ks_bounds_right: 0.015 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.39 

Current progress: 71 percent done.
SLC35C1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.437615e-01	ci left: 6.420510e-02	ci right 7.424761e-02	k: 691	n:10000
Cons ci ratio: 2.375804e-01	ci left: 2.334629e-02	ci right 2.973355e-02	k: 264	n:10000
KS ci ratio: 2.520978e-02	ci left: 6.983735e-01	ci right 7.163055e-01	k: 7074	n:10000
SLC35C1   10000 perm   2 sec   (6368 perm/sec)   p_kst 7.074000e-01   p_cons 2.640000e-02   p_joint 6.910000e-02

Joint ci ratio: 6.730742e-02	ci left: 1.400978e-01	ci right 1.499057e-01	k: 2899	n:20000
Cons ci ratio: 1.675123e-01	ci left: 2.441395e-02	ci right 2.892508e-02	k: 532	n:20000
KS ci ratio: 1.774252e-02	ci left: 7.030020e-01	ci right 7.156371e-01	k: 14187	n:20000
SLC35C1   20000 perm   4 sec   (5680 perm/sec)   p_kst 7.093500e-01   p_cons 2.660000e-02   p_joint 1.449500e-01

Joint ci ratio: 7.992279e-02	ci left: 7.125883e-02	ci right 7.722394e-02	k: 2226	n:30000
Cons ci ratio: 1.356884e-01	ci left: 2.522737e-02	ci right 2.893165e-02	k: 811	n:30000
KS ci ratio: 1.452606e-02	ci left: 7.030528e-01	ci right 7.133736e-01	k: 21247	n:30000
SLC35C1   30000 perm   6 sec   (5338 perm/sec)   p_kst 7.082333e-01   p_cons 2.703333e-02   p_joint 7.420000e-02

Joint ci ratio: 8.031989e-02	ci left: 5.393828e-02	ci right 5.847642e-02	k: 2247	n:40000
Cons ci ratio: 1.191412e-01	ci left: 2.477801e-02	ci right 2.794126e-02	k: 1053	n:40000
KS ci ratio: 1.261297e-02	ci left: 7.026630e-01	ci right 7.116069e-01	k: 28286	n:40000
SLC35C1   40000 perm   8 sec   (5031 perm/sec)   p_kst 7.071500e-01   p_cons 2.632500e-02   p_joint 5.617500e-02

Joint ci ratio: 6.398688e-02	ci left: 6.758156e-02	ci right 7.206854e-02	k: 3490	n:50000
Cons ci ratio: 1.057216e-01	ci left: 2.534350e-02	ci right 2.819180e-02	k: 1337	n:50000
KS ci ratio: 1.132910e-02	ci left: 7.013824e-01	ci right 7.093937e-01	k: 35270	n:50000
SLC35C1   50000 perm   10 sec   (4860 perm/sec)   p_kst 7.054000e-01   p_cons 2.674000e-02   p_joint 6.980000e-02

Joint ci ratio: 5.353351e-02	ci left: 7.983305e-02	ci right 8.424081e-02	k: 4921	n:60000
Cons ci ratio: 9.680814e-02	ci left: 2.531080e-02	ci right 2.790194e-02	k: 1595	n:60000
KS ci ratio: 1.033787e-02	ci left: 7.019015e-01	ci right 7.092120e-01	k: 42334	n:60000
SLC35C1   60000 perm   13 sec   (4758 perm/sec)   p_kst 7.055667e-01   p_cons 2.658333e-02   p_joint 8.201667e-02

Outputting figure to mutsig2_images.part000000000160/SLC35C1.2_1103_60000_0.70557_0.026583_0.082017.png
                gene_name: SLC35C1
               theta_stop: 0.097 
                    nperm: 60000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.027 
      ci_cons_bounds_left: 0.025 
     ci_cons_bounds_right: 0.028 
                  p_joint: 0.082 
     ci_joint_bounds_left: 0.080 
    ci_joint_bounds_right: 0.084 

Current progress: 73 percent done.
SLC35D3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.485564e-02	ci left: 5.486014e-01	ci right 5.681645e-01	k: 5584	n:10000
Cons ci ratio: 8.924358e-03	ci left: 9.463777e-01	ci right 9.549573e-01	k: 9508	n:10000
KS ci ratio: 1.083156e-01	ci left: 1.094933e-01	ci right 1.221314e-01	k: 1157	n:10000
SLC35D3   10000 perm   2 sec   (6245 perm/sec)   p_kst 1.157000e-01   p_cons 9.508000e-01   p_joint 5.584000e-01

Joint ci ratio: 3.465167e-02	ci left: 3.833812e-01	ci right 3.969508e-01	k: 7803	n:20000
Cons ci ratio: 6.699079e-03	ci left: 9.415961e-01	ci right 9.479738e-01	k: 18897	n:20000
KS ci ratio: 7.664826e-02	ci left: 1.111998e-01	ci right 1.201123e-01	k: 2312	n:20000
SLC35D3   20000 perm   4 sec   (5619 perm/sec)   p_kst 1.156000e-01   p_cons 9.448500e-01   p_joint 3.901500e-01

Outputting figure to mutsig2_images.part000000000160/SLC35D3.2_1259_20000_0.1156_0.94485_0.39015.png
                gene_name: SLC35D3
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 75 percent done.
SLC35E2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.443915e-02	ci left: 2.613165e-01	ci right 2.788176e-01	k: 2700	n:10000
Cons ci ratio: 2.057000e-02	ci left: 7.759037e-01	ci right 7.921305e-01	k: 7841	n:10000
KS ci ratio: 1.393752e-01	ci left: 6.816984e-02	ci right 7.848038e-02	k: 732	n:10000
SLC35E2   10000 perm   2 sec   (5822 perm/sec)   p_kst 7.320000e-02   p_cons 7.841000e-01   p_joint 2.700000e-01

Joint ci ratio: 5.170248e-02	ci left: 2.174448e-01	ci right 2.290358e-01	k: 4464	n:20000
Cons ci ratio: 1.475104e-02	ci left: 7.734870e-01	ci right 7.850317e-01	k: 15586	n:20000
KS ci ratio: 9.720240e-02	ci left: 7.153325e-02	ci right 7.889082e-02	k: 1503	n:20000
SLC35E2   20000 perm   4 sec   (5164 perm/sec)   p_kst 7.515000e-02   p_cons 7.793000e-01   p_joint 2.232000e-01

Outputting figure to mutsig2_images.part000000000160/SLC35E2.2_2071_20000_0.07515_0.7793_0.2232.png
                gene_name: SLC35E2
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.075 
        ci_ks_bounds_left: 0.072 
       ci_ks_bounds_right: 0.079 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 77 percent done.
SLC35E4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.477448e-02	ci left: 3.293229e-01	ci right 3.479712e-01	k: 3386	n:10000
Cons ci ratio: 2.155120e-02	ci left: 7.594982e-01	ci right 7.761455e-01	k: 7679	n:10000
KS ci ratio: 1.038998e-01	ci left: 1.180892e-01	ci right 1.311304e-01	k: 1245	n:10000
SLC35E4   10000 perm   2 sec   (6335 perm/sec)   p_kst 1.245000e-01   p_cons 7.679000e-01   p_joint 3.386000e-01

Joint ci ratio: 1.522617e-02	ci left: 7.622880e-01	ci right 7.740340e-01	k: 15364	n:20000
Cons ci ratio: 1.513425e-02	ci left: 7.644567e-01	ci right 7.761646e-01	k: 15407	n:20000
KS ci ratio: 7.375725e-02	ci left: 1.191670e-01	ci right 1.283427e-01	k: 2474	n:20000
SLC35E4   20000 perm   4 sec   (5617 perm/sec)   p_kst 1.237000e-01   p_cons 7.703500e-01   p_joint 7.682000e-01

Outputting figure to mutsig2_images.part000000000160/SLC35E4.2_1061_20000_0.1237_0.77035_0.7682.png
                gene_name: SLC35E4
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 79 percent done.
SLC35F3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.432495e-02	ci left: 2.620092e-01	ci right 2.795245e-01	k: 2707	n:10000
Cons ci ratio: 5.787322e-02	ci left: 3.053055e-01	ci right 3.236027e-01	k: 3144	n:10000
KS ci ratio: 1.168182e-01	ci left: 9.525826e-02	ci right 1.071752e-01	k: 1011	n:10000
SLC35F3   10000 perm   2 sec   (6331 perm/sec)   p_kst 1.011000e-01   p_cons 3.144000e-01   p_joint 2.707000e-01

Joint ci ratio: 2.077223e-02	ci left: 6.336541e-01	ci right 6.470051e-01	k: 12807	n:20000
Cons ci ratio: 4.130535e-02	ci left: 3.040407e-01	ci right 3.169145e-01	k: 6209	n:20000
KS ci ratio: 8.103225e-02	ci left: 1.004895e-01	ci right 1.090258e-01	k: 2094	n:20000
SLC35F3   20000 perm   4 sec   (5531 perm/sec)   p_kst 1.047000e-01   p_cons 3.104500e-01   p_joint 6.403500e-01

Outputting figure to mutsig2_images.part000000000160/SLC35F3.2_1505_20000_0.1047_0.31045_0.64035.png
                gene_name: SLC35F3
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 81 percent done.
SLC35F4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.409676e-02	ci left: 3.348846e-01	ci right 3.536063e-01	k: 3442	n:10000
Cons ci ratio: 2.011378e-02	ci left: 7.835050e-01	ci right 7.995249e-01	k: 7916	n:10000
KS ci ratio: 5.915936e-02	ci left: 2.959840e-01	ci right 3.141297e-01	k: 3050	n:10000
SLC35F4   10000 perm   2 sec   (6347 perm/sec)   p_kst 3.050000e-01   p_cons 7.916000e-01   p_joint 3.442000e-01

Outputting figure to mutsig2_images.part000000000160/SLC35F4.2_1598_10000_0.305_0.7916_0.3442.png
                gene_name: SLC35F4
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 83 percent done.
SLC35F5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.157470e-02	ci left: 2.794346e-01	ci right 2.972888e-01	k: 2883	n:10000
Cons ci ratio: 6.649439e-02	ci left: 2.492482e-01	ci right 2.664931e-01	k: 2578	n:10000
KS ci ratio: 7.430771e-02	ci left: 2.095461e-01	ci right 2.258187e-01	k: 2176	n:10000
SLC35F5   10000 perm   2 sec   (6158 perm/sec)   p_kst 2.176000e-01   p_cons 2.578000e-01   p_joint 2.883000e-01

Outputting figure to mutsig2_images.part000000000160/SLC35F5.2_1632_10000_0.2176_0.2578_0.2883.png
                gene_name: SLC35F5
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 85 percent done.
SLC36A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.520250e-02	ci left: 8.625359e-01	ci right 8.758482e-01	k: 8693	n:10000
KS ci ratio: 7.649036e-02	ci left: 1.999823e-01	ci right 2.159882e-01	k: 2079	n:10000
SLC36A2   10000 perm   2 sec   (6443 perm/sec)   p_kst 2.079000e-01   p_cons 8.693000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000160/SLC36A2.2_1492_10000_0.2079_0.8693_1.png
                gene_name: SLC36A2
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
SLC37A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.054284e-02	ci left: 6.126129e-01	ci right 6.317159e-01	k: 6222	n:10000
Cons ci ratio: 4.504170e-02	ci left: 4.211655e-01	ci right 4.406747e-01	k: 4309	n:10000
KS ci ratio: 2.837173e-02	ci left: 6.467962e-01	ci right 6.655127e-01	k: 6562	n:10000
SLC37A1   10000 perm   2 sec   (5929 perm/sec)   p_kst 6.562000e-01   p_cons 4.309000e-01   p_joint 6.222000e-01

Outputting figure to mutsig2_images.part000000000160/SLC37A1.2_1678_10000_0.6562_0.4309_0.6222.png
                gene_name: SLC37A1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 90 percent done.
SLC37A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.277098e-02	ci left: 8.981605e-01	ci right 9.098029e-01	k: 9041	n:10000
Cons ci ratio: 3.974662e-02	ci left: 4.831544e-01	ci right 5.028497e-01	k: 4930	n:10000
KS ci ratio: 3.699097e-02	ci left: 5.190593e-01	ci right 5.387238e-01	k: 5289	n:10000
SLC37A2   10000 perm   2 sec   (6582 perm/sec)   p_kst 5.289000e-01   p_cons 4.930000e-01   p_joint 9.041000e-01

Outputting figure to mutsig2_images.part000000000160/SLC37A2.2_1610_10000_0.5289_0.493_0.9041.png
                gene_name: SLC37A2
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 92 percent done.
SLC37A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.135773e-02	ci left: 7.627374e-01	ci right 7.793044e-01	k: 7711	n:10000
Cons ci ratio: 2.190155e-02	ci left: 7.536289e-01	ci right 7.704182e-01	k: 7621	n:10000
KS ci ratio: 3.154520e-02	ci left: 5.972468e-01	ci right 6.164909e-01	k: 6069	n:10000
SLC37A3   10000 perm   2 sec   (6428 perm/sec)   p_kst 6.069000e-01   p_cons 7.621000e-01   p_joint 7.711000e-01

Outputting figure to mutsig2_images.part000000000160/SLC37A3.2_1690_10000_0.6069_0.7621_0.7711.png
                gene_name: SLC37A3
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 94 percent done.
SLC38A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.113991e-02	ci left: 7.663823e-01	ci right 7.828574e-01	k: 7747	n:10000
Cons ci ratio: 2.645157e-02	ci left: 6.779086e-01	ci right 6.961823e-01	k: 6871	n:10000
KS ci ratio: 4.000184e-02	ci left: 4.799564e-01	ci right 4.996496e-01	k: 4898	n:10000
SLC38A4   10000 perm   2 sec   (6350 perm/sec)   p_kst 4.898000e-01   p_cons 6.871000e-01   p_joint 7.747000e-01

Outputting figure to mutsig2_images.part000000000160/SLC38A4.2_1704_10000_0.4898_0.6871_0.7747.png
                gene_name: SLC38A4
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 96 percent done.
SLC39A14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.275826e-02	ci left: 3.462109e-01	ci right 3.650732e-01	k: 3556	n:10000
KS ci ratio: 2.495430e-02	ci left: 7.026103e-01	ci right 7.204663e-01	k: 7116	n:10000
SLC39A14   10000 perm   2 sec   (5918 perm/sec)   p_kst 7.116000e-01   p_cons 3.556000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000160/SLC39A14.2_1803_10000_0.7116_0.3556_1.png
                gene_name: SLC39A14
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
SLC39A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.792695e-02	ci left: 3.049087e-01	ci right 3.231997e-01	k: 3140	n:10000
Cons ci ratio: 3.801281e-02	ci left: 5.054515e-01	ci right 5.251396e-01	k: 5153	n:10000
KS ci ratio: 8.282464e-02	ci left: 1.753662e-01	ci right 1.906189e-01	k: 1829	n:10000
SLC39A4   10000 perm   2 sec   (5671 perm/sec)   p_kst 1.829000e-01   p_cons 5.153000e-01   p_joint 3.140000e-01

Outputting figure to mutsig2_images.part000000000160/SLC39A4.2_2109_10000_0.1829_0.5153_0.314.png
                gene_name: SLC39A4
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000160
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 160 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1710>
Subject: Job 8004553: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1710>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000161> was used as the working directory.
Started at Sun Nov 11 17:17:58 2012
Results reported at Sun Nov 11 20:18:50 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000161.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000161.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 161  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000161.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  18228.39 sec.
    Max Memory :      4829 MB
    Max Swap   :      7249 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
161
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 161
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 161: processing genes 14476 - 14566
Calculating significance of each gene.
Using projection method.
14476	SLC39A5	1
14477	SLC39A6	8.440896e-01
14478	SLC39A7	8.612650e-01
14479	SLC39A8	1
14480	SLC39A9	5.840909e-01
14481	SLC3A1	4.629000e-01
14482	SLC3A2	8.162874e-01
14483	SLC40A1	1
14484	SLC41A1	1
14485	SLC41A2	7.158152e-01
14486	SLC41A3	1
14487	SLC43A1	1
14488	SLC43A2	1
14489	SLC43A3	8.168965e-01
14490	SLC44A1	6.494224e-01
14491	SLC44A2	8.338644e-01
14492	SLC44A3	8.924256e-01
14493	SLC44A4	1
14494	SLC44A5	8.731265e-04
14495	SLC45A1	5.048904e-01
14496	SLC45A2	5.159861e-02
14497	SLC45A3	1
14498	SLC45A4	1
14499	SLC46A1	4.933076e-01
14500	SLC46A2	8.233993e-02
14501	SLC46A3	1
14502	SLC47A1	1
14503	SLC47A2	1
14504	SLC48A1	1
14505	SLC4A1	1.299773e-01
14506	SLC4A10	1
14507	SLC4A11	1
14508	SLC4A1AP	4.209511e-01
14509	SLC4A2	9.697213e-01
14510	SLC4A3	1
14511	SLC4A4	9.062627e-01
14512	SLC4A5	6.219966e-01
14513	SLC4A7	9.904044e-01
14514	SLC4A8	6.409986e-01
14515	SLC4A9	9.828615e-01
14516	SLC5A1	4.466180e-01
14517	SLC5A10	1
14518	SLC5A11	1
14519	SLC5A12	1.355718e-01
14520	SLC5A2	1
14521	SLC5A3	6.641653e-01
14522	SLC5A4	6.480172e-01
14523	SLC5A5	1
14524	SLC5A6	1
14525	SLC5A7	7.685028e-01
14526	SLC5A8	1
14527	SLC5A9	8.911651e-01
14528	SLC6A1	8.877199e-01
14529	SLC6A11	6.281815e-01
14530	SLC6A12	2.981550e-01
14531	SLC6A13	8.665454e-01
14532	SLC6A14	1
14533	SLC6A15	1.211401e-01
14534	SLC6A16	8.879861e-01
14535	SLC6A17	9.115770e-01
14536	SLC6A18	1
14537	SLC6A19	7.955030e-01
14538	SLC6A2	5.696375e-01
14539	SLC6A20	1
14540	SLC6A3	9.206036e-01
14541	SLC6A4	3.871933e-01
14542	SLC6A5	9.234396e-01
14543	SLC6A6	6.615244e-01
14544	SLC6A7	6.686149e-01
14545	SLC6A8	4.611510e-01
14546	SLC6A9	1
14547	SLC7A1	4.053120e-01
14548	SLC7A10	8.153015e-01
14549	SLC7A11	1
14550	SLC7A13	1
14551	SLC7A14	9.466834e-01
14552	SLC7A2	4.937062e-01
14553	SLC7A3	2.949947e-01
14554	SLC7A4	6.242972e-01
14555	SLC7A5	7.898980e-01
14556	SLC7A6	9.194101e-01
14557	SLC7A6OS	1.549000e-01
14558	SLC7A7	1
14559	SLC7A8	5.645343e-01
14560	SLC7A9	1
14561	SLC8A1	9.474595e-01
14562	SLC8A2	8.000299e-01
14563	SLC8A3	1
14564	SLC9A1	7.589736e-01
14565	SLC9A10	9.682930e-01
14566	SLC9A11	8.119399e-01
Done

Running MutSig 2:
Scatter job 161: processing genes 14476 - 14566
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SLC8A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.368076e-02	ci left: 2.124066e-01	ci right 2.287565e-01	k: 2205	n:10000
Cons ci ratio: 2.832774e-02	ci left: 6.475005e-01	ci right 6.662080e-01	k: 6569	n:10000
KS ci ratio: 1.092244e-01	ci left: 1.078341e-01	ci right 1.203917e-01	k: 1140	n:10000
SLC8A1   10000 perm   2 sec   (4537 perm/sec)   p_kst 1.140000e-01   p_cons 6.569000e-01   p_joint 2.205000e-01

Joint ci ratio: 4.935896e-02	ci left: 2.337967e-01	ci right 2.456790e-01	k: 4794	n:20000
Cons ci ratio: 2.098917e-02	ci left: 6.288357e-01	ci right 6.422249e-01	k: 12711	n:20000
KS ci ratio: 7.648011e-02	ci left: 1.116422e-01	ci right 1.205697e-01	k: 2321	n:20000
SLC8A1   20000 perm   7 sec   (3064 perm/sec)   p_kst 1.160500e-01   p_cons 6.355500e-01   p_joint 2.397000e-01

Outputting figure to mutsig2_images.part000000000161/SLC8A1.15_3070_20000_0.11605_0.63555_0.2397.png
                gene_name: SLC8A1
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 2 percent done.
SLC4A10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.540610e-02	ci left: 1.665170e-01	ci right 1.814734e-01	k: 1739	n:10000
Cons ci ratio: 4.284305e-02	ci left: 4.458030e-01	ci right 4.654229e-01	k: 4556	n:10000
KS ci ratio: 1.017651e-01	ci left: 1.225867e-01	ci right 1.358301e-01	k: 1291	n:10000
SLC4A10   10000 perm   2 sec   (4512 perm/sec)   p_kst 1.291000e-01   p_cons 4.556000e-01   p_joint 1.739000e-01

Joint ci ratio: 5.606796e-02	ci left: 1.908641e-01	ci right 2.019243e-01	k: 3927	n:20000
Cons ci ratio: 2.811850e-02	ci left: 4.858477e-01	ci right 4.997544e-01	k: 9856	n:20000
KS ci ratio: 7.290257e-02	ci left: 1.216766e-01	ci right 1.309324e-01	k: 2525	n:20000
SLC4A10   20000 perm   5 sec   (4251 perm/sec)   p_kst 1.262500e-01   p_cons 4.928000e-01   p_joint 1.963500e-01

Outputting figure to mutsig2_images.part000000000161/SLC4A10.13_3546_20000_0.12625_0.4928_0.19635.png
                gene_name: SLC4A10
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 3 percent done.
SLC44A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.369416e-02	ci left: 7.236062e-01	ci right 7.410582e-01	k: 7324	n:10000
Cons ci ratio: 2.035729e-02	ci left: 7.794504e-01	ci right 7.955817e-01	k: 7876	n:10000
KS ci ratio: 3.951678e-02	ci left: 4.860529e-01	ci right 5.057495e-01	k: 4959	n:10000
SLC44A5   10000 perm   2 sec   (5047 perm/sec)   p_kst 4.959000e-01   p_cons 7.876000e-01   p_joint 7.324000e-01

Outputting figure to mutsig2_images.part000000000161/SLC44A5.10_2363_10000_0.4959_0.7876_0.7324.png
                gene_name: SLC44A5
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 5 percent done.
SLC6A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.722167e-02	ci left: 5.159569e-01	ci right 5.356281e-01	k: 5258	n:10000
KS ci ratio: 7.638588e-03	ci left: 9.596369e-01	ci right 9.670900e-01	k: 9635	n:10000
SLC6A3   10000 perm   2 sec   (5240 perm/sec)   p_kst 9.635000e-01   p_cons 5.258000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000161/SLC6A3.9_1919_10000_0.9635_0.5258_1.png
                gene_name: SLC6A3
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 6 percent done.
SLC5A8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.860597e-02	ci left: 2.999501e-01	ci right 3.181613e-01	k: 3090	n:10000
Cons ci ratio: 3.022542e-02	ci left: 6.175362e-01	ci right 6.365898e-01	k: 6271	n:10000
KS ci ratio: 8.383558e-02	ci left: 1.718257e-01	ci right 1.869615e-01	k: 1793	n:10000
SLC5A8   10000 perm   2 sec   (5440 perm/sec)   p_kst 1.793000e-01   p_cons 6.271000e-01   p_joint 3.090000e-01

Outputting figure to mutsig2_images.part000000000161/SLC5A8.8_1893_10000_0.1793_0.6271_0.309.png
                gene_name: SLC5A8
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 8 percent done.
SLC4A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.682907e-01	ci left: 1.809309e-02	ci right 2.379077e-02	k: 208	n:10000
Cons ci ratio: 1.085809e-01	ci left: 1.090053e-01	ci right 1.216198e-01	k: 1152	n:10000
KS ci ratio: 2.232741e-01	ci left: 2.655489e-02	ci right 3.332262e-02	k: 298	n:10000
SLC4A1   10000 perm   2 sec   (5436 perm/sec)   p_kst 2.980000e-02   p_cons 1.152000e-01   p_joint 2.080000e-02

Joint ci ratio: 1.876616e-01	ci left: 1.934382e-02	ci right 2.339700e-02	k: 426	n:20000
Cons ci ratio: 8.047557e-02	ci left: 1.017662e-01	ci right 1.103488e-01	k: 2120	n:20000
KS ci ratio: 1.601038e-01	ci left: 2.676609e-02	ci right 3.147214e-02	k: 581	n:20000
SLC4A1   20000 perm   4 sec   (4931 perm/sec)   p_kst 2.905000e-02   p_cons 1.060000e-01   p_joint 2.130000e-02

Joint ci ratio: 1.398132e-01	ci left: 2.374559e-02	ci right 2.734709e-02	k: 765	n:30000
Cons ci ratio: 6.529026e-02	ci left: 1.037536e-01	ci right 1.107893e-01	k: 3217	n:30000
KS ci ratio: 1.266724e-01	ci left: 2.897069e-02	ci right 3.292083e-02	k: 927	n:30000
SLC4A1   30000 perm   6 sec   (4733 perm/sec)   p_kst 3.090000e-02   p_cons 1.072333e-01   p_joint 2.550000e-02

Joint ci ratio: 9.464096e-02	ci left: 3.917540e-02	ci right 4.309157e-02	k: 1644	n:40000
Cons ci ratio: 5.663690e-02	ci left: 1.039128e-01	ci right 1.099944e-01	k: 4277	n:40000
KS ci ratio: 1.043134e-01	ci left: 3.231849e-02	ci right 3.589956e-02	k: 1363	n:40000
SLC4A1   40000 perm   9 sec   (4599 perm/sec)   p_kst 3.407500e-02   p_cons 1.069250e-01   p_joint 4.110000e-02

Joint ci ratio: 7.527991e-02	ci left: 4.950026e-02	ci right 5.339202e-02	k: 2571	n:50000
Cons ci ratio: 4.772210e-02	ci left: 1.160553e-01	ci right 1.217490e-01	k: 5944	n:50000
KS ci ratio: 9.367126e-02	ci left: 3.225266e-02	ci right 3.544176e-02	k: 1691	n:50000
SLC4A1   50000 perm   11 sec   (4500 perm/sec)   p_kst 3.382000e-02   p_cons 1.188800e-01   p_joint 5.142000e-02

Outputting figure to mutsig2_images.part000000000161/SLC4A1.7_2812_50000_0.03382_0.11888_0.05142.png
                gene_name: SLC4A1
               theta_stop: 0.094 
                    nperm: 50000 
                     p_ks: 0.034 
        ci_ks_bounds_left: 0.032 
       ci_ks_bounds_right: 0.035 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.051 
     ci_joint_bounds_left: 0.050 
    ci_joint_bounds_right: 0.053 

Current progress: 10 percent done.
SLC4A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.803467e-02	ci left: 3.041153e-01	ci right 3.223936e-01	k: 3132	n:10000
Cons ci ratio: 6.960300e-02	ci left: 2.323474e-01	ci right 2.492038e-01	k: 2407	n:10000
KS ci ratio: 9.316556e-02	ci left: 1.433484e-01	ci right 1.574560e-01	k: 1503	n:10000
SLC4A4   10000 perm   2 sec   (4950 perm/sec)   p_kst 1.503000e-01   p_cons 2.407000e-01   p_joint 3.132000e-01

Outputting figure to mutsig2_images.part000000000161/SLC4A4.7_3603_10000_0.1503_0.2407_0.3132.png
                gene_name: SLC4A4
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 11 percent done.
SLC5A11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.244088e-02	ci left: 2.737893e-01	ci right 2.915374e-01	k: 2826	n:10000
Cons ci ratio: 3.004477e-02	ci left: 6.203499e-01	ci right 6.393743e-01	k: 6299	n:10000
KS ci ratio: 8.146546e-02	ci left: 1.802855e-01	ci right 1.956967e-01	k: 1879	n:10000
SLC5A11   10000 perm   2 sec   (6008 perm/sec)   p_kst 1.879000e-01   p_cons 6.299000e-01   p_joint 2.826000e-01

Outputting figure to mutsig2_images.part000000000161/SLC5A11.7_2088_10000_0.1879_0.6299_0.2826.png
                gene_name: SLC5A11
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 13 percent done.
SLC9A11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.341096e-02	ci left: 1.733008e-01	ci right 1.884856e-01	k: 1808	n:10000
Cons ci ratio: 1.637446e-01	ci left: 4.974666e-02	ci right 5.871525e-02	k: 541	n:10000
KS ci ratio: 3.314211e-02	ci left: 5.733634e-01	ci right 5.927881e-01	k: 5831	n:10000
SLC9A11   10000 perm   2 sec   (4985 perm/sec)   p_kst 5.831000e-01   p_cons 5.410000e-02   p_joint 1.808000e-01

Joint ci ratio: 5.516939e-02	ci left: 1.959595e-01	ci right 2.071274e-01	k: 4030	n:20000
Cons ci ratio: 1.072598e-01	ci left: 5.923278e-02	ci right 6.599506e-02	k: 1251	n:20000
KS ci ratio: 2.340265e-02	ci left: 5.769317e-01	ci right 5.906439e-01	k: 11676	n:20000
SLC9A11   20000 perm   4 sec   (4550 perm/sec)   p_kst 5.838000e-01   p_cons 6.255000e-02   p_joint 2.015000e-01

Joint ci ratio: 4.193103e-02	ci left: 2.208472e-01	ci right 2.303393e-01	k: 6767	n:30000
Cons ci ratio: 8.782760e-02	ci left: 5.952549e-02	ci right 6.502633e-02	k: 1867	n:30000
KS ci ratio: 1.913740e-02	ci left: 5.774629e-01	ci right 5.886544e-01	k: 17492	n:30000
SLC9A11   30000 perm   7 sec   (4365 perm/sec)   p_kst 5.830667e-01   p_cons 6.223333e-02   p_joint 2.255667e-01

Outputting figure to mutsig2_images.part000000000161/SLC9A11.7_3483_30000_0.58307_0.062233_0.22557.png
                gene_name: SLC9A11
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.062 
      ci_cons_bounds_left: 0.060 
     ci_cons_bounds_right: 0.065 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 15 percent done.
SLC6A15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.514891e-02	ci left: 6.993822e-01	ci right 7.172963e-01	k: 7084	n:10000
Cons ci ratio: 4.155349e-02	ci left: 4.609766e-01	ci right 4.806404e-01	k: 4708	n:10000
KS ci ratio: 4.703470e-02	ci left: 4.001384e-01	ci right 4.195142e-01	k: 4098	n:10000
SLC6A15   10000 perm   2 sec   (5607 perm/sec)   p_kst 4.098000e-01   p_cons 4.708000e-01   p_joint 7.084000e-01

Outputting figure to mutsig2_images.part000000000161/SLC6A15.6_2351_10000_0.4098_0.4708_0.7084.png
                gene_name: SLC6A15
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 16 percent done.
SLC6A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 1.181215e+00	ci left: 4.796397e-04	ci right 1.838264e-03	k: 10	n:10000
KS ci ratio: 1.959510e+00	ci left: 6.187149e-05	ci right 8.764745e-04	k: 3	n:10000
SLC6A5   10000 perm   2 sec   (5390 perm/sec)   p_kst 3.000000e-04   p_cons 1.000000e-03   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 1.086832e+00	ci left: 3.100660e-04	ci right 1.047844e-03	k: 12	n:20000
KS ci ratio: 1.481324e+00	ci left: 1.101024e-04	ci right 6.528585e-04	k: 6	n:20000
SLC6A5   20000 perm   4 sec   (4881 perm/sec)   p_kst 3.000000e-04   p_cons 6.000000e-04   p_joint 0

Joint ci ratio: 3.919869e+00	ci left: 0	ci right 1.229551e-04	k: 0	n:30000
Cons ci ratio: 9.504544e-01	ci left: 3.048758e-04	ci right 8.659558e-04	k: 16	n:30000
KS ci ratio: 1.306449e+00	ci left: 1.151345e-04	ci right 5.253717e-04	k: 8	n:30000
SLC6A5   30000 perm   6 sec   (4682 perm/sec)   p_kst 2.666667e-04   p_cons 5.333333e-04   p_joint 0

Joint ci ratio: 3.919902e+00	ci left: 0	ci right 9.221773e-05	k: 0	n:40000
Cons ci ratio: 8.763085e-01	ci left: 2.860045e-04	ci right 7.416724e-04	k: 19	n:40000
KS ci ratio: 1.131423e+00	ci left: 1.372867e-04	ci right 4.919976e-04	k: 11	n:40000
SLC6A5   40000 perm   9 sec   (4549 perm/sec)   p_kst 2.750000e-04   p_cons 4.750000e-04   p_joint 0

Joint ci ratio: 3.919922e+00	ci left: 0	ci right 7.377487e-05	k: 0	n:50000
Cons ci ratio: 7.405955e-01	ci left: 3.558926e-04	ci right 7.855751e-04	k: 27	n:50000
KS ci ratio: 9.798334e-01	ci left: 1.679171e-04	ci right 4.947562e-04	k: 15	n:50000
SLC6A5   50000 perm   11 sec   (4443 perm/sec)   p_kst 3.000000e-04   p_cons 5.400000e-04   p_joint 0

Joint ci ratio: 3.919935e+00	ci left: 0	ci right 6.147943e-05	k: 0	n:60000
Cons ci ratio: 6.531319e-01	ci left: 4.063456e-04	ci right 8.111830e-04	k: 35	n:60000
KS ci ratio: 8.763852e-01	ci left: 1.906644e-04	ci right 4.944703e-04	k: 19	n:60000
SLC6A5   60000 perm   14 sec   (4349 perm/sec)   p_kst 3.166667e-04   p_cons 5.833333e-04   p_joint 0

Joint ci ratio: 3.919944e+00	ci left: 0	ci right 5.269689e-05	k: 0	n:70000
Cons ci ratio: 6.196249e-01	ci left: 3.962121e-04	ci right 7.615547e-04	k: 39	n:70000
KS ci ratio: 8.356095e-01	ci left: 1.857140e-04	ci right 4.585455e-04	k: 21	n:70000
SLC6A5   70000 perm   16 sec   (4267 perm/sec)   p_kst 3.000000e-04   p_cons 5.571429e-04   p_joint 0

Joint ci ratio: 3.919951e+00	ci left: 0	ci right 4.610993e-05	k: 0	n:80000
Cons ci ratio: 5.541950e-01	ci left: 4.531642e-04	ci right 8.096776e-04	k: 49	n:80000
KS ci ratio: 8.356267e-01	ci left: 1.624987e-04	ci right 4.012313e-04	k: 21	n:80000
SLC6A5   80000 perm   19 sec   (4194 perm/sec)   p_kst 2.625000e-04   p_cons 6.125000e-04   p_joint 0

Joint ci ratio: 3.919956e+00	ci left: 0	ci right 4.098671e-05	k: 0	n:90000
Cons ci ratio: 5.332814e-01	ci left: 4.411483e-04	ci right 7.702113e-04	k: 53	n:90000
KS ci ratio: 7.838868e-01	ci left: 1.708656e-04	ci right 3.967530e-04	k: 24	n:90000
SLC6A5   90000 perm   22 sec   (4127 perm/sec)   p_kst 2.666667e-04   p_cons 5.888889e-04   p_joint 0

Joint ci ratio: 3.919961e+00	ci left: 0	ci right 3.688811e-05	k: 0	n:100000
Cons ci ratio: 4.860557e-01	ci left: 4.929118e-04	ci right 8.171933e-04	k: 64	n:100000
KS ci ratio: 7.407029e-01	ci left: 1.779390e-04	ci right 3.928117e-04	k: 27	n:100000
SLC6A5   100000 perm   25 sec   (4059 perm/sec)   p_kst 2.700000e-04   p_cons 6.400000e-04   p_joint 0

Joint ci ratio: 3.919964e+00	ci left: 0	ci right 3.353471e-05	k: 0	n:110000
Cons ci ratio: 4.683784e-01	ci left: 4.880874e-04	ci right 7.937877e-04	k: 69	n:110000
KS ci ratio: 6.928607e-01	ci left: 1.914896e-04	ci right 3.999948e-04	k: 31	n:110000
SLC6A5   110000 perm   28 sec   (3994 perm/sec)   p_kst 2.818182e-04   p_cons 6.272727e-04   p_joint 0

Joint ci ratio: 3.919967e+00	ci left: 0	ci right 3.074019e-05	k: 0	n:120000
Cons ci ratio: 4.465803e-01	ci left: 4.990261e-04	ci right 7.926479e-04	k: 76	n:120000
KS ci ratio: 6.625015e-01	ci left: 1.962243e-04	ci right 3.959076e-04	k: 34	n:120000
SLC6A5   120000 perm   31 sec   (3932 perm/sec)   p_kst 2.833333e-04   p_cons 6.333333e-04   p_joint 0

Joint ci ratio: 3.919970e+00	ci left: 0	ci right 2.837559e-05	k: 0	n:130000
Cons ci ratio: 4.250430e-01	ci left: 5.154293e-04	ci right 7.999209e-04	k: 84	n:130000
KS ci ratio: 6.532404e-01	ci left: 1.875360e-04	ci right 3.744151e-04	k: 35	n:130000
SLC6A5   130000 perm   34 sec   (3870 perm/sec)   p_kst 2.692308e-04   p_cons 6.461538e-04   p_joint 0

Joint ci ratio: 3.919972e+00	ci left: 0	ci right 2.634879e-05	k: 0	n:140000
Cons ci ratio: 4.085525e-01	ci left: 5.233707e-04	ci right 7.979969e-04	k: 91	n:140000
KS ci ratio: 6.358194e-01	ci left: 1.860881e-04	ci right 3.642648e-04	k: 37	n:140000
SLC6A5   140000 perm   37 sec   (3814 perm/sec)   p_kst 2.642857e-04   p_cons 6.500000e-04   p_joint 0

Joint ci ratio: 3.919974e+00	ci left: 0	ci right 2.459223e-05	k: 0	n:150000
Cons ci ratio: 3.978857e-01	ci left: 5.184319e-04	ci right 7.814942e-04	k: 96	n:150000
KS ci ratio: 6.197217e-01	ci left: 1.848917e-04	ci right 3.554116e-04	k: 39	n:150000
SLC6A5   150000 perm   40 sec   (3760 perm/sec)   p_kst 2.600000e-04   p_cons 6.400000e-04   p_joint 0

Joint ci ratio: 3.919976e+00	ci left: 0	ci right 2.305523e-05	k: 0	n:160000
Cons ci ratio: 3.824261e-01	ci left: 5.311270e-04	ci right 7.875296e-04	k: 104	n:160000
KS ci ratio: 5.778876e-01	ci left: 2.051528e-04	ci right 3.763167e-04	k: 45	n:160000
SLC6A5   160000 perm   43 sec   (3708 perm/sec)   p_kst 2.812500e-04   p_cons 6.500000e-04   p_joint 0

Joint ci ratio: 3.919977e+00	ci left: 0	ci right 2.169906e-05	k: 0	n:170000
Cons ci ratio: 3.753464e-01	ci left: 5.211723e-04	ci right 7.669654e-04	k: 108	n:170000
KS ci ratio: 5.488258e-01	ci left: 2.183074e-04	ci right 3.877393e-04	k: 50	n:170000
SLC6A5   170000 perm   47 sec   (3655 perm/sec)   p_kst 2.941176e-04   p_cons 6.352941e-04   p_joint 0

Joint ci ratio: 3.919978e+00	ci left: 0	ci right 2.049356e-05	k: 0	n:180000
Cons ci ratio: 3.686458e-01	ci left: 5.123626e-04	ci right 7.486477e-04	k: 112	n:180000
KS ci ratio: 5.333629e-01	ci left: 2.205666e-04	ci right 3.851231e-04	k: 53	n:180000
SLC6A5   180000 perm   50 sec   (3606 perm/sec)   p_kst 2.944444e-04   p_cons 6.222222e-04   p_joint 0

Joint ci ratio: 3.919979e+00	ci left: 0	ci right 1.941497e-05	k: 0	n:190000
Cons ci ratio: 3.622916e-01	ci left: 5.045151e-04	ci right 7.322236e-04	k: 116	n:190000
KS ci ratio: 5.059886e-01	ci left: 2.363952e-04	ci right 4.005383e-04	k: 59	n:190000
SLC6A5   190000 perm   53 sec   (3557 perm/sec)   p_kst 3.105263e-04   p_cons 6.105263e-04   p_joint 0

Joint ci ratio: 3.919980e+00	ci left: 0	ci right 1.844423e-05	k: 0	n:200000
Cons ci ratio: 3.547910e-01	ci left: 5.020376e-04	ci right 7.228552e-04	k: 121	n:200000
KS ci ratio: 4.977621e-01	ci left: 2.333086e-04	ci right 3.917683e-04	k: 61	n:200000
SLC6A5   200000 perm   57 sec   (3510 perm/sec)   p_kst 3.050000e-04   p_cons 6.050000e-04   p_joint 0

Joint ci ratio: 3.919981e+00	ci left: 0	ci right 1.756594e-05	k: 0	n:210000
Cons ci ratio: 3.491157e-01	ci left: 4.954945e-04	ci right 7.091589e-04	k: 125	n:210000
KS ci ratio: 4.899242e-01	ci left: 2.305357e-04	ci right 3.838142e-04	k: 63	n:210000
SLC6A5   210000 perm   61 sec   (3464 perm/sec)   p_kst 3.000000e-04   p_cons 5.952381e-04   p_joint 0

Joint ci ratio: 3.919982e+00	ci left: 0	ci right 1.676749e-05	k: 0	n:220000
Cons ci ratio: 3.385325e-01	ci left: 5.061970e-04	ci right 7.164146e-04	k: 133	n:220000
KS ci ratio: 4.752953e-01	ci left: 2.360261e-04	ci right 3.867461e-04	k: 67	n:220000
SLC6A5   220000 perm   64 sec   (3420 perm/sec)   p_kst 3.045455e-04   p_cons 6.045455e-04   p_joint 0

Joint ci ratio: 3.919983e+00	ci left: 0	ci right 1.603848e-05	k: 0	n:230000
Cons ci ratio: 3.323889e-01	ci left: 5.040966e-04	ci right 7.088298e-04	k: 138	n:230000
KS ci ratio: 4.718407e-01	ci left: 2.295926e-04	ci right 3.747947e-04	k: 68	n:230000
SLC6A5   230000 perm   68 sec   (3376 perm/sec)   p_kst 2.956522e-04   p_cons 6.000000e-04   p_joint 0

Joint ci ratio: 3.919984e+00	ci left: 0	ci right 1.537021e-05	k: 0	n:240000
Cons ci ratio: 3.265680e-01	ci left: 5.022028e-04	ci right 7.018458e-04	k: 143	n:240000
KS ci ratio: 4.556195e-01	ci left: 2.384255e-04	ci right 3.824289e-04	k: 73	n:240000
SLC6A5   240000 perm   72 sec   (3334 perm/sec)   p_kst 3.041667e-04   p_cons 5.958333e-04   p_joint 0

Joint ci ratio: 3.919984e+00	ci left: 0	ci right 1.475541e-05	k: 0	n:250000
Cons ci ratio: 3.221260e-01	ci left: 4.968119e-04	ci right 6.910706e-04	k: 147	n:250000
KS ci ratio: 4.409639e-01	ci left: 2.466306e-04	ci right 3.893751e-04	k: 78	n:250000
SLC6A5   250000 perm   76 sec   (3293 perm/sec)   p_kst 3.120000e-04   p_cons 5.880000e-04   p_joint 0

Joint ci ratio: 3.919985e+00	ci left: 0	ci right 1.418790e-05	k: 0	n:260000
Cons ci ratio: 3.157884e-01	ci left: 4.989336e-04	ci right 6.894090e-04	k: 153	n:260000
KS ci ratio: 4.328225e-01	ci left: 2.474140e-04	ci right 3.871992e-04	k: 81	n:260000
SLC6A5   260000 perm   80 sec   (3251 perm/sec)   p_kst 3.115385e-04   p_cons 5.884615e-04   p_joint 0

Joint ci ratio: 3.919985e+00	ci left: 0	ci right 1.366242e-05	k: 0	n:270000
Cons ci ratio: 3.078913e-01	ci left: 5.077664e-04	ci right 6.958154e-04	k: 161	n:270000
KS ci ratio: 4.276397e-01	ci left: 2.448555e-04	ci right 3.810637e-04	k: 83	n:270000
SLC6A5   270000 perm   84 sec   (3213 perm/sec)   p_kst 3.074074e-04   p_cons 5.962963e-04   p_joint 0

Joint ci ratio: 3.919986e+00	ci left: 0	ci right 1.317448e-05	k: 0	n:280000
Cons ci ratio: 3.023433e-01	ci left: 5.094203e-04	ci right 6.940287e-04	k: 167	n:280000
KS ci ratio: 4.178070e-01	ci left: 2.488767e-04	ci right 3.832510e-04	k: 87	n:280000
SLC6A5   280000 perm   88 sec   (3176 perm/sec)   p_kst 3.107143e-04   p_cons 5.964286e-04   p_joint 0

Joint ci ratio: 3.919986e+00	ci left: 0	ci right 1.272019e-05	k: 0	n:290000
Cons ci ratio: 2.962342e-01	ci left: 5.141801e-04	ci right 6.960413e-04	k: 174	n:290000
KS ci ratio: 4.131394e-01	ci left: 2.464702e-04	ci right 3.776493e-04	k: 89	n:290000
SLC6A5   290000 perm   92 sec   (3139 perm/sec)   p_kst 3.068966e-04   p_cons 6.000000e-04   p_joint 0

Joint ci ratio: 3.919987e+00	ci left: 0	ci right 1.229619e-05	k: 0	n:300000
Cons ci ratio: 2.912829e-01	ci left: 5.155672e-04	ci right 6.943093e-04	k: 180	n:300000
KS ci ratio: 4.064214e-01	ci left: 2.472236e-04	ci right 3.760864e-04	k: 92	n:300000
SLC6A5   300000 perm   97 sec   (3103 perm/sec)   p_kst 3.066667e-04   p_cons 6.000000e-04   p_joint 0

Joint ci ratio: 3.919987e+00	ci left: 0	ci right 1.189954e-05	k: 0	n:310000
Cons ci ratio: 2.850506e-01	ci left: 5.228779e-04	ci right 6.995782e-04	k: 188	n:310000
KS ci ratio: 4.021212e-01	ci left: 2.450441e-04	ci right 3.710590e-04	k: 94	n:310000
SLC6A5   310000 perm   101 sec   (3068 perm/sec)   p_kst 3.032258e-04   p_cons 6.064516e-04   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.152768e-05	k: 0	n:320000
Cons ci ratio: 2.799138e-01	ci left: 5.268637e-04	ci right 7.011367e-04	k: 195	n:320000
KS ci ratio: 3.806804e-01	ci left: 2.683813e-04	ci right 3.972016e-04	k: 105	n:320000
SLC6A5   320000 perm   105 sec   (3034 perm/sec)   p_kst 3.281250e-04   p_cons 6.093750e-04   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.117836e-05	k: 0	n:330000
Cons ci ratio: 2.757254e-01	ci left: 5.278135e-04	ci right 6.993352e-04	k: 201	n:330000
KS ci ratio: 3.788987e-01	ci left: 2.629894e-04	ci right 3.884837e-04	k: 106	n:330000
SLC6A5   330000 perm   110 sec   (3000 perm/sec)   p_kst 3.212121e-04   p_cons 6.090909e-04   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.084959e-05	k: 0	n:340000
Cons ci ratio: 2.743721e-01	ci left: 5.177659e-04	ci right 6.850542e-04	k: 203	n:340000
KS ci ratio: 3.771417e-01	ci left: 2.579160e-04	ci right 3.802774e-04	k: 107	n:340000
SLC6A5   340000 perm   115 sec   (2968 perm/sec)   p_kst 3.147059e-04   p_cons 5.970588e-04   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 1.053960e-05	k: 0	n:350000
Cons ci ratio: 2.697822e-01	ci left: 5.216086e-04	ci right 6.868419e-04	k: 210	n:350000
KS ci ratio: 3.703454e-01	ci left: 2.609022e-04	ci right 3.819094e-04	k: 111	n:350000
SLC6A5   350000 perm   119 sec   (2937 perm/sec)   p_kst 3.171429e-04   p_cons 6.000000e-04   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 1.024683e-05	k: 0	n:360000
Cons ci ratio: 2.654151e-01	ci left: 5.252597e-04	ci right 6.885086e-04	k: 217	n:360000
KS ci ratio: 3.639037e-01	ci left: 2.637411e-04	ci right 3.834324e-04	k: 115	n:360000
SLC6A5   360000 perm   124 sec   (2907 perm/sec)   p_kst 3.194444e-04   p_cons 6.027778e-04   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 9.969895e-06	k: 0	n:370000
Cons ci ratio: 2.612535e-01	ci left: 5.287338e-04	ci right 6.900650e-04	k: 224	n:370000
KS ci ratio: 3.563049e-01	ci left: 2.689042e-04	ci right 3.878001e-04	k: 120	n:370000
SLC6A5   370000 perm   129 sec   (2877 perm/sec)   p_kst 3.243243e-04   p_cons 6.054054e-04   p_joint 0

Joint ci ratio: 5.146813e-01	ci left: 1.136105e-04	ci right 1.943381e-04	k: 57	n:380000
Cons ci ratio: 2.561792e-01	ci left: 5.369686e-04	ci right 6.971215e-04	k: 233	n:380000
KS ci ratio: 3.533968e-01	ci left: 2.666217e-04	ci right 3.833254e-04	k: 122	n:380000
SLC6A5   380000 perm   133 sec   (2848 perm/sec)   p_kst 3.210526e-04   p_cons 6.131579e-04   p_joint 1.500000e-04

Joint ci ratio: 5.779376e-01	ci left: 8.416354e-05	ci right 1.543907e-04	k: 45	n:390000
Cons ci ratio: 2.540180e-01	ci left: 5.328007e-04	ci right 6.901576e-04	k: 237	n:390000
KS ci ratio: 3.385778e-01	ci left: 2.855412e-04	ci right 4.041412e-04	k: 133	n:390000
SLC6A5   390000 perm   138 sec   (2820 perm/sec)   p_kst 3.410256e-04   p_cons 6.076923e-04   p_joint 1.153846e-04

Joint ci ratio: 5.657686e-01	ci left: 8.633582e-05	ci right 1.562471e-04	k: 47	n:400000
Cons ci ratio: 2.488428e-01	ci left: 5.429060e-04	ci right 6.994751e-04	k: 247	n:400000
KS ci ratio: 3.373225e-01	ci left: 2.806904e-04	ci right 3.967492e-04	k: 134	n:400000
SLC6A5   400000 perm   143 sec   (2791 perm/sec)   p_kst 3.350000e-04   p_cons 6.175000e-04   p_joint 1.175000e-04

Joint ci ratio: 5.657695e-01	ci left: 8.423004e-05	ci right 1.524362e-04	k: 47	n:410000
Cons ci ratio: 2.439714e-01	ci left: 5.525491e-04	ci right 7.083074e-04	k: 257	n:410000
KS ci ratio: 3.312435e-01	ci left: 2.850161e-04	ci right 4.002871e-04	k: 139	n:410000
SLC6A5   410000 perm   148 sec   (2764 perm/sec)   p_kst 3.390244e-04   p_cons 6.268293e-04   p_joint 1.146341e-04

Joint ci ratio: 5.599667e-01	ci left: 8.426643e-05	ci right 1.515235e-04	k: 48	n:420000
Cons ci ratio: 2.407274e-01	ci left: 5.550479e-04	ci right 7.091196e-04	k: 264	n:420000
KS ci ratio: 3.254817e-01	ci left: 2.891537e-04	ci right 4.036390e-04	k: 144	n:420000
SLC6A5   420000 perm   154 sec   (2733 perm/sec)   p_kst 3.428571e-04   p_cons 6.285714e-04   p_joint 1.142857e-04

Joint ci ratio: 5.543388e-01	ci left: 8.430457e-05	ci right 1.506498e-04	k: 49	n:430000
Cons ci ratio: 2.384884e-01	ci left: 5.530696e-04	ci right 7.049533e-04	k: 269	n:430000
KS ci ratio: 3.221662e-01	ci left: 2.888388e-04	ci right 4.017939e-04	k: 147	n:430000
SLC6A5   430000 perm   159 sec   (2705 perm/sec)   p_kst 3.418605e-04   p_cons 6.255814e-04   p_joint 1.139535e-04

Joint ci ratio: 5.435735e-01	ci left: 8.630311e-05	ci right 1.523963e-04	k: 51	n:440000
Cons ci ratio: 2.363107e-01	ci left: 5.511875e-04	ci right 7.009700e-04	k: 274	n:440000
KS ci ratio: 3.127939e-01	ci left: 3.010998e-04	ci right 4.147404e-04	k: 156	n:440000
SLC6A5   440000 perm   164 sec   (2678 perm/sec)   p_kst 3.545455e-04   p_cons 6.227273e-04   p_joint 1.159091e-04

Joint ci ratio: 6.048402e-01	ci left: 6.538367e-05	ci right 1.236005e-04	k: 41	n:450000
Cons ci ratio: 2.341917e-01	ci left: 5.493951e-04	ci right 6.971578e-04	k: 279	n:450000
KS ci ratio: 3.069821e-01	ci left: 3.067055e-04	ci right 4.198906e-04	k: 162	n:450000
SLC6A5   450000 perm   170 sec   (2651 perm/sec)   p_kst 3.600000e-04   p_cons 6.200000e-04   p_joint 9.111111e-05

Joint ci ratio: 5.977658e-01	ci left: 6.580491e-05	ci right 1.234150e-04	k: 42	n:460000
Cons ci ratio: 2.305155e-01	ci left: 5.558784e-04	ci right 7.027039e-04	k: 288	n:460000
KS ci ratio: 3.014827e-01	ci left: 3.120861e-04	ci right 4.247984e-04	k: 168	n:460000
SLC6A5   460000 perm   175 sec   (2626 perm/sec)   p_kst 3.652174e-04   p_cons 6.260870e-04   p_joint 9.130435e-05

Joint ci ratio: 5.977664e-01	ci left: 6.440479e-05	ci right 1.207892e-04	k: 42	n:470000
Cons ci ratio: 2.266271e-01	ci left: 5.641099e-04	ci right 7.102451e-04	k: 298	n:470000
KS ci ratio: 2.997150e-01	ci left: 3.093804e-04	ci right 4.203355e-04	k: 170	n:470000
SLC6A5   470000 perm   181 sec   (2601 perm/sec)   p_kst 3.617021e-04   p_cons 6.340426e-04   p_joint 8.936170e-05

Joint ci ratio: 5.977670e-01	ci left: 6.306301e-05	ci right 1.182728e-04	k: 42	n:480000
Cons ci ratio: 2.243870e-01	ci left: 5.641515e-04	ci right 7.086533e-04	k: 304	n:480000
KS ci ratio: 2.962698e-01	ci left: 3.106454e-04	ci right 4.205329e-04	k: 174	n:480000
SLC6A5   480000 perm   186 sec   (2576 perm/sec)   p_kst 3.625000e-04   p_cons 6.333333e-04   p_joint 8.750000e-05

Joint ci ratio: 7.279034e-01	ci left: 3.797134e-05	ci right 8.258629e-05	k: 28	n:490000
Cons ci ratio: 2.222120e-01	ci left: 5.641983e-04	ci right 7.071196e-04	k: 310	n:490000
KS ci ratio: 2.937628e-01	ci left: 3.099751e-04	ci right 4.185249e-04	k: 177	n:490000
SLC6A5   490000 perm   192 sec   (2552 perm/sec)   p_kst 3.612245e-04   p_cons 6.326531e-04   p_joint 5.714286e-05

Joint ci ratio: 7.279039e-01	ci left: 3.721191e-05	ci right 8.093458e-05	k: 28	n:500000
Cons ci ratio: 2.204473e-01	ci left: 5.623599e-04	ci right 7.035308e-04	k: 315	n:500000
KS ci ratio: 2.913183e-01	ci left: 3.093353e-04	ci right 4.165935e-04	k: 180	n:500000
SLC6A5   500000 perm   198 sec   (2528 perm/sec)   p_kst 3.600000e-04   p_cons 6.300000e-04   p_joint 5.600000e-05

Joint ci ratio: 7.156691e-01	ci left: 3.808219e-05	ci right 8.166337e-05	k: 29	n:510000
Cons ci ratio: 2.201005e-01	ci left: 5.531855e-04	ci right 6.918053e-04	k: 316	n:510000
KS ci ratio: 2.881516e-01	ci left: 3.105432e-04	ci right 4.168364e-04	k: 184	n:510000
SLC6A5   510000 perm   204 sec   (2505 perm/sec)   p_kst 3.607843e-04   p_cons 6.196078e-04   p_joint 5.686275e-05

Joint ci ratio: 7.156695e-01	ci left: 3.734984e-05	ci right 8.009294e-05	k: 29	n:520000
Cons ci ratio: 2.190670e-01	ci left: 5.479991e-04	ci right 6.845876e-04	k: 319	n:520000
KS ci ratio: 2.858434e-01	ci left: 3.099252e-04	ci right 4.150038e-04	k: 187	n:520000
SLC6A5   520000 perm   209 sec   (2482 perm/sec)   p_kst 3.596154e-04   p_cons 6.134615e-04   p_joint 5.576923e-05

Joint ci ratio: 7.156699e-01	ci left: 3.664512e-05	ci right 7.858177e-05	k: 29	n:530000
Cons ci ratio: 2.163786e-01	ci left: 5.519309e-04	ci right 6.875869e-04	k: 327	n:530000
KS ci ratio: 2.843354e-01	ci left: 3.075813e-04	ci right 4.112163e-04	k: 189	n:530000
SLC6A5   530000 perm   215 sec   (2460 perm/sec)   p_kst 3.566038e-04   p_cons 6.169811e-04   p_joint 5.471698e-05

Joint ci ratio: 6.823629e-01	ci left: 4.053363e-05	ci right 8.365537e-05	k: 32	n:540000
Cons ci ratio: 2.150716e-01	ci left: 5.487171e-04	ci right 6.826609e-04	k: 331	n:540000
KS ci ratio: 2.806661e-01	ci left: 3.104888e-04	ci right 4.135145e-04	k: 194	n:540000
SLC6A5   540000 perm   222 sec   (2438 perm/sec)   p_kst 3.592593e-04   p_cons 6.129630e-04   p_joint 5.925926e-05

Joint ci ratio: 7.687564e-01	ci left: 2.941599e-05	ci right 6.709915e-05	k: 25	n:550000
Cons ci ratio: 2.134704e-01	ci left: 5.473434e-04	ci right 6.798270e-04	k: 336	n:550000
KS ci ratio: 2.730679e-01	ci left: 3.234557e-04	ci right 4.273804e-04	k: 205	n:550000
SLC6A5   550000 perm   228 sec   (2416 perm/sec)   p_kst 3.727273e-04   p_cons 6.109091e-04   p_joint 4.545455e-05

Joint ci ratio: 7.687567e-01	ci left: 2.889071e-05	ci right 6.590096e-05	k: 25	n:560000
Cons ci ratio: 2.115951e-01	ci left: 5.477135e-04	ci right 6.789710e-04	k: 342	n:560000
KS ci ratio: 2.685426e-01	ci left: 3.293313e-04	ci right 4.330950e-04	k: 212	n:560000
SLC6A5   560000 perm   234 sec   (2395 perm/sec)   p_kst 3.785714e-04   p_cons 6.107143e-04   p_joint 4.464286e-05

Joint ci ratio: 7.543858e-01	ci left: 2.979681e-05	ci right 6.683442e-05	k: 26	n:570000
Cons ci ratio: 2.091695e-01	ci left: 5.514003e-04	ci right 6.818325e-04	k: 350	n:570000
KS ci ratio: 2.660560e-01	ci left: 3.301009e-04	ci right 4.329835e-04	k: 216	n:570000
SLC6A5   570000 perm   240 sec   (2374 perm/sec)   p_kst 3.789474e-04   p_cons 6.140351e-04   p_joint 4.561404e-05

Joint ci ratio: 7.543861e-01	ci left: 2.928307e-05	ci right 6.568212e-05	k: 26	n:580000
Cons ci ratio: 2.079881e-01	ci left: 5.484296e-04	ci right 6.773331e-04	k: 354	n:580000
KS ci ratio: 2.618652e-01	ci left: 3.356801e-04	ci right 4.383837e-04	k: 223	n:580000
SLC6A5   580000 perm   246 sec   (2353 perm/sec)   p_kst 3.844828e-04   p_cons 6.103448e-04   p_joint 4.482759e-05

Joint ci ratio: 7.543865e-01	ci left: 2.878674e-05	ci right 6.456887e-05	k: 26	n:590000
Cons ci ratio: 2.071154e-01	ci left: 5.439545e-04	ci right 6.712018e-04	k: 357	n:590000
KS ci ratio: 2.601293e-01	ci left: 3.347427e-04	ci right 4.363702e-04	k: 226	n:590000
SLC6A5   590000 perm   253 sec   (2333 perm/sec)   p_kst 3.830508e-04   p_cons 6.050847e-04   p_joint 4.406780e-05

Joint ci ratio: 7.156723e-01	ci left: 3.236982e-05	ci right 6.941400e-05	k: 29	n:600000
Cons ci ratio: 2.059683e-01	ci left: 5.412104e-04	ci right 6.670262e-04	k: 361	n:600000
KS ci ratio: 2.540452e-01	ci left: 3.463161e-04	ci right 4.486089e-04	k: 237	n:600000
SLC6A5   600000 perm   259 sec   (2313 perm/sec)   p_kst 3.950000e-04   p_cons 6.016667e-04   p_joint 4.833333e-05

Joint ci ratio: 7.040343e-01	ci left: 3.318200e-05	ci right 7.020724e-05	k: 30	n:610000
Cons ci ratio: 2.048400e-01	ci left: 5.385581e-04	ci right 6.629856e-04	k: 365	n:610000
KS ci ratio: 2.519369e-01	ci left: 3.467804e-04	ci right 4.482270e-04	k: 241	n:610000
SLC6A5   610000 perm   266 sec   (2290 perm/sec)   p_kst 3.950820e-04   p_cons 5.983607e-04   p_joint 4.918033e-05

Joint ci ratio: 7.040346e-01	ci left: 3.264680e-05	ci right 6.907487e-05	k: 30	n:620000
Cons ci ratio: 2.042833e-01	ci left: 5.329321e-04	ci right 6.556833e-04	k: 367	n:620000
KS ci ratio: 2.514186e-01	ci left: 3.426983e-04	ci right 4.427121e-04	k: 242	n:620000
SLC6A5   620000 perm   273 sec   (2270 perm/sec)   p_kst 3.903226e-04   p_cons 5.919355e-04   p_joint 4.838710e-05

Joint ci ratio: 6.823660e-01	ci left: 3.474307e-05	ci right 7.170473e-05	k: 32	n:630000
Cons ci ratio: 2.026380e-01	ci left: 5.335115e-04	ci right 6.552840e-04	k: 373	n:630000
KS ci ratio: 2.478732e-01	ci left: 3.476748e-04	ci right 4.474895e-04	k: 249	n:630000
SLC6A5   630000 perm   280 sec   (2252 perm/sec)   p_kst 3.952381e-04   p_cons 5.920635e-04   p_joint 5.079365e-05

Joint ci ratio: 6.722561e-01	ci left: 3.549351e-05	ci right 7.241217e-05	k: 33	n:640000
Cons ci ratio: 2.010319e-01	ci left: 5.340766e-04	ci right 6.548933e-04	k: 379	n:640000
KS ci ratio: 2.463994e-01	ci left: 3.466395e-04	ci right 4.454748e-04	k: 252	n:640000
SLC6A5   640000 perm   287 sec   (2233 perm/sec)   p_kst 3.937500e-04   p_cons 5.921875e-04   p_joint 5.156250e-05

Joint ci ratio: 6.533147e-01	ci left: 3.750610e-05	ci right 7.488618e-05	k: 35	n:650000
Cons ci ratio: 1.999824e-01	ci left: 5.317049e-04	ci right 6.512806e-04	k: 383	n:650000
KS ci ratio: 2.430593e-01	ci left: 3.514156e-04	ci right 4.500495e-04	k: 259	n:650000
SLC6A5   650000 perm   294 sec   (2214 perm/sec)   p_kst 3.984615e-04   p_cons 5.892308e-04   p_joint 5.384615e-05

Joint ci ratio: 6.533150e-01	ci left: 3.693782e-05	ci right 7.375155e-05	k: 35	n:660000
Cons ci ratio: 1.989492e-01	ci left: 5.294066e-04	ci right 6.477757e-04	k: 387	n:660000
KS ci ratio: 2.416692e-01	ci left: 3.503605e-04	ci right 4.480515e-04	k: 262	n:660000
SLC6A5   660000 perm   301 sec   (2196 perm/sec)   p_kst 3.969697e-04   p_cons 5.863636e-04   p_joint 5.303030e-05

Joint ci ratio: 6.533153e-01	ci left: 3.638650e-05	ci right 7.265079e-05	k: 35	n:670000
Cons ci ratio: 1.979318e-01	ci left: 5.271785e-04	ci right 6.443738e-04	k: 391	n:670000
KS ci ratio: 2.394040e-01	ci left: 3.521442e-04	ci right 4.492757e-04	k: 267	n:670000
SLC6A5   670000 perm   308 sec   (2178 perm/sec)   p_kst 3.985075e-04   p_cons 5.835821e-04   p_joint 5.223881e-05

Joint ci ratio: 6.533156e-01	ci left: 3.585140e-05	ci right 7.158241e-05	k: 35	n:680000
Cons ci ratio: 1.969299e-01	ci left: 5.250174e-04	ci right 6.410706e-04	k: 395	n:680000
KS ci ratio: 2.380754e-01	ci left: 3.511135e-04	ci right 4.473440e-04	k: 270	n:680000
SLC6A5   680000 perm   315 sec   (2160 perm/sec)   p_kst 3.970588e-04   p_cons 5.808824e-04   p_joint 5.147059e-05

Joint ci ratio: 6.722574e-01	ci left: 3.292150e-05	ci right 6.716496e-05	k: 33	n:690000
Cons ci ratio: 1.949700e-01	ci left: 5.284339e-04	ci right 6.439419e-04	k: 403	n:690000
KS ci ratio: 2.363376e-01	ci left: 3.514775e-04	ci right 4.470017e-04	k: 274	n:690000
SLC6A5   690000 perm   322 sec   (2143 perm/sec)   p_kst 3.971014e-04   p_cons 5.840580e-04   p_joint 4.782609e-05

Joint ci ratio: 6.722576e-01	ci left: 3.245119e-05	ci right 6.620547e-05	k: 33	n:700000
Cons ci ratio: 1.937748e-01	ci left: 5.276801e-04	ci right 6.422328e-04	k: 408	n:700000
KS ci ratio: 2.346373e-01	ci left: 3.518336e-04	ci right 4.466668e-04	k: 278	n:700000
SLC6A5   700000 perm   329 sec   (2126 perm/sec)   p_kst 3.971429e-04   p_cons 5.828571e-04   p_joint 4.714286e-05

Joint ci ratio: 6.722579e-01	ci left: 3.199413e-05	ci right 6.527301e-05	k: 33	n:710000
Cons ci ratio: 1.921374e-01	ci left: 5.296310e-04	ci right 6.435220e-04	k: 415	n:710000
KS ci ratio: 2.342184e-01	ci left: 3.482038e-04	ci right 4.418668e-04	k: 279	n:710000
SLC6A5   710000 perm   337 sec   (2109 perm/sec)   p_kst 3.929577e-04   p_cons 5.845070e-04   p_joint 4.647887e-05

Joint ci ratio: 6.722581e-01	ci left: 3.154976e-05	ci right 6.436644e-05	k: 33	n:720000
Cons ci ratio: 1.909931e-01	ci left: 5.288864e-04	ci right 6.418614e-04	k: 420	n:720000
KS ci ratio: 2.313440e-01	ci left: 3.525230e-04	ci right 4.460178e-04	k: 286	n:720000
SLC6A5   720000 perm   344 sec   (2093 perm/sec)   p_kst 3.972222e-04   p_cons 5.833333e-04   p_joint 4.583333e-05

Joint ci ratio: 6.625846e-01	ci left: 3.225499e-05	ci right 6.508377e-05	k: 34	n:730000
Cons ci ratio: 1.898691e-01	ci left: 5.281641e-04	ci right 6.402442e-04	k: 425	n:730000
KS ci ratio: 2.297485e-01	ci left: 3.528569e-04	ci right 4.457033e-04	k: 290	n:730000
SLC6A5   730000 perm   352 sec   (2076 perm/sec)   p_kst 3.972603e-04   p_cons 5.821918e-04   p_joint 4.657534e-05

Joint ci ratio: 6.625848e-01	ci left: 3.181911e-05	ci right 6.420427e-05	k: 34	n:740000
Cons ci ratio: 1.889841e-01	ci left: 5.261758e-04	ci right 6.372538e-04	k: 429	n:740000
KS ci ratio: 2.281856e-01	ci left: 3.531840e-04	ci right 4.453952e-04	k: 294	n:740000
SLC6A5   740000 perm   359 sec   (2061 perm/sec)   p_kst 3.972973e-04   p_cons 5.797297e-04   p_joint 4.594595e-05

Joint ci ratio: 6.625850e-01	ci left: 3.139485e-05	ci right 6.334822e-05	k: 34	n:750000
Cons ci ratio: 1.876793e-01	ci left: 5.267829e-04	ci right 6.371338e-04	k: 435	n:750000
KS ci ratio: 2.266541e-01	ci left: 3.535044e-04	ci right 4.450933e-04	k: 298	n:750000
SLC6A5   750000 perm   367 sec   (2045 perm/sec)   p_kst 3.973333e-04   p_cons 5.800000e-04   p_joint 4.533333e-05

Joint ci ratio: 6.625852e-01	ci left: 3.098176e-05	ci right 6.251470e-05	k: 34	n:760000
Cons ci ratio: 1.864010e-01	ci left: 5.273767e-04	ci right 6.370144e-04	k: 441	n:760000
KS ci ratio: 2.259001e-01	ci left: 3.513354e-04	ci right 4.420173e-04	k: 300	n:760000
SLC6A5   760000 perm   374 sec   (2030 perm/sec)   p_kst 3.947368e-04   p_cons 5.802632e-04   p_joint 4.473684e-05

Joint ci ratio: 6.625854e-01	ci left: 3.057939e-05	ci right 6.170282e-05	k: 34	n:770000
Cons ci ratio: 1.849422e-01	ci left: 5.291961e-04	ci right 6.382544e-04	k: 448	n:770000
KS ci ratio: 2.247829e-01	ci left: 3.504488e-04	ci right 4.403925e-04	k: 303	n:770000
SLC6A5   770000 perm   382 sec   (2014 perm/sec)   p_kst 3.935065e-04   p_cons 5.818182e-04   p_joint 4.415584e-05

Joint ci ratio: 6.625856e-01	ci left: 3.018735e-05	ci right 6.091177e-05	k: 34	n:780000
Cons ci ratio: 1.833160e-01	ci left: 5.321952e-04	ci right 6.408002e-04	k: 456	n:780000
KS ci ratio: 2.233185e-01	ci left: 3.507963e-04	ci right 4.401620e-04	k: 307	n:780000
SLC6A5   780000 perm   390 sec   (2000 perm/sec)   p_kst 3.935897e-04   p_cons 5.846154e-04   p_joint 4.358974e-05

Joint ci ratio: 6.625858e-01	ci left: 2.980523e-05	ci right 6.014074e-05	k: 34	n:790000
Cons ci ratio: 1.823215e-01	ci left: 5.314981e-04	ci right 6.393073e-04	k: 461	n:790000
KS ci ratio: 2.229573e-01	ci left: 3.475508e-04	ci right 4.359269e-04	k: 308	n:790000
SLC6A5   790000 perm   398 sec   (1985 perm/sec)   p_kst 3.898734e-04   p_cons 5.835443e-04   p_joint 4.303797e-05

Joint ci ratio: 6.533182e-01	ci left: 3.047366e-05	ci right 6.084514e-05	k: 35	n:800000
Cons ci ratio: 1.817327e-01	ci left: 5.284334e-04	ci right 6.352367e-04	k: 464	n:800000
KS ci ratio: 2.222395e-01	ci left: 3.455670e-04	ci right 4.331170e-04	k: 310	n:800000
SLC6A5   800000 perm   406 sec   (1971 perm/sec)   p_kst 3.875000e-04   p_cons 5.800000e-04   p_joint 4.375000e-05

Joint ci ratio: 6.533184e-01	ci left: 3.009744e-05	ci right 6.009397e-05	k: 35	n:810000
Cons ci ratio: 1.809563e-01	ci left: 5.266236e-04	ci right 6.325566e-04	k: 468	n:810000
KS ci ratio: 2.190912e-01	ci left: 3.517979e-04	ci right 4.394940e-04	k: 319	n:810000
SLC6A5   810000 perm   414 sec   (1957 perm/sec)   p_kst 3.938272e-04   p_cons 5.777778e-04   p_joint 4.320988e-05

Joint ci ratio: 6.444291e-01	ci left: 3.074891e-05	ci right 6.077897e-05	k: 36	n:820000
Cons ci ratio: 1.798097e-01	ci left: 5.271881e-04	ci right 6.324895e-04	k: 474	n:820000
KS ci ratio: 2.177346e-01	ci left: 3.521189e-04	ci right 4.392787e-04	k: 323	n:820000
SLC6A5   820000 perm   422 sec   (1943 perm/sec)   p_kst 3.939024e-04   p_cons 5.780488e-04   p_joint 4.390244e-05

Joint ci ratio: 6.444293e-01	ci left: 3.037844e-05	ci right 6.004670e-05	k: 36	n:830000
Cons ci ratio: 1.790576e-01	ci left: 5.254392e-04	ci right 6.299047e-04	k: 478	n:830000
KS ci ratio: 2.170659e-01	ci left: 3.501549e-04	ci right 4.365269e-04	k: 325	n:830000
SLC6A5   830000 perm   430 sec   (1930 perm/sec)   p_kst 3.915663e-04   p_cons 5.759036e-04   p_joint 4.337349e-05

Joint ci ratio: 6.358932e-01	ci left: 3.101377e-05	ci right 6.071333e-05	k: 37	n:840000
Cons ci ratio: 1.784998e-01	ci left: 5.225955e-04	ci right 6.261371e-04	k: 481	n:840000
KS ci ratio: 2.160741e-01	ci left: 3.493641e-04	ci right 4.350950e-04	k: 328	n:840000
SLC6A5   840000 perm   438 sec   (1917 perm/sec)   p_kst 3.904762e-04   p_cons 5.726190e-04   p_joint 4.404762e-05

Joint ci ratio: 6.276876e-01	ci left: 3.163673e-05	ci right 6.136181e-05	k: 38	n:850000
Cons ci ratio: 1.777639e-01	ci left: 5.209433e-04	ci right 6.236863e-04	k: 485	n:850000
KS ci ratio: 2.150958e-01	ci left: 3.485928e-04	ci right 4.336960e-04	k: 331	n:850000
SLC6A5   850000 perm   447 sec   (1903 perm/sec)   p_kst 3.894118e-04   p_cons 5.705882e-04   p_joint 4.470588e-05

Joint ci ratio: 6.276878e-01	ci left: 3.126886e-05	ci right 6.064830e-05	k: 38	n:860000
Cons ci ratio: 1.761401e-01	ci left: 5.248876e-04	ci right 6.273621e-04	k: 494	n:860000
KS ci ratio: 2.131779e-01	ci left: 3.511420e-04	ci right 4.360033e-04	k: 337	n:860000
SLC6A5   860000 perm   455 sec   (1890 perm/sec)   p_kst 3.918605e-04   p_cons 5.744186e-04   p_joint 4.418605e-05

Joint ci ratio: 6.197918e-01	ci left: 3.187698e-05	ci right 6.128028e-05	k: 39	n:870000
Cons ci ratio: 1.756090e-01	ci left: 5.221508e-04	ci right 6.237511e-04	k: 497	n:870000
KS ci ratio: 2.122382e-01	ci left: 3.503705e-04	ci right 4.346235e-04	k: 340	n:870000
SLC6A5   870000 perm   463 sec   (1877 perm/sec)   p_kst 3.908046e-04   p_cons 5.712644e-04   p_joint 4.482759e-05

Joint ci ratio: 6.197920e-01	ci left: 3.151474e-05	ci right 6.058392e-05	k: 39	n:880000
Cons ci ratio: 1.749082e-01	ci left: 5.205633e-04	ci right 6.214077e-04	k: 501	n:880000
KS ci ratio: 2.100924e-01	ci left: 3.539230e-04	ci right 4.380591e-04	k: 347	n:880000
SLC6A5   880000 perm   472 sec   (1865 perm/sec)   p_kst 3.943182e-04   p_cons 5.693182e-04   p_joint 4.431818e-05

Joint ci ratio: 6.197921e-01	ci left: 3.116064e-05	ci right 5.990321e-05	k: 39	n:890000
Cons ci ratio: 1.737012e-01	ci left: 5.222363e-04	ci right 6.226335e-04	k: 508	n:890000
KS ci ratio: 2.097915e-01	ci left: 3.510108e-04	ci right 4.343197e-04	k: 348	n:890000
SLC6A5   890000 perm   481 sec   (1852 perm/sec)   p_kst 3.910112e-04   p_cons 5.707865e-04   p_joint 4.382022e-05

Joint ci ratio: 6.197923e-01	ci left: 3.081441e-05	ci right 5.923762e-05	k: 39	n:900000
Cons ci ratio: 1.725188e-01	ci left: 5.238745e-04	ci right 6.238298e-04	k: 515	n:900000
KS ci ratio: 2.088957e-01	ci left: 3.502692e-04	ci right 4.330018e-04	k: 351	n:900000
SLC6A5   900000 perm   489 sec   (1839 perm/sec)   p_kst 3.900000e-04   p_cons 5.722222e-04   p_joint 4.333333e-05

Joint ci ratio: 6.197925e-01	ci left: 3.047579e-05	ci right 5.858666e-05	k: 39	n:910000
Cons ci ratio: 1.720197e-01	ci left: 5.212722e-04	ci right 6.204133e-04	k: 518	n:910000
KS ci ratio: 2.080113e-01	ci left: 3.495447e-04	ci right 4.317121e-04	k: 354	n:910000
SLC6A5   910000 perm   498 sec   (1827 perm/sec)   p_kst 3.890110e-04   p_cons 5.692308e-04   p_joint 4.285714e-05

Joint ci ratio: 6.276887e-01	ci left: 2.922958e-05	ci right 5.669301e-05	k: 38	n:920000
Cons ci ratio: 1.711971e-01	ci left: 5.208075e-04	ci right 6.193377e-04	k: 523	n:920000
KS ci ratio: 2.071380e-01	ci left: 3.488367e-04	ci right 4.304497e-04	k: 357	n:920000
SLC6A5   920000 perm   507 sec   (1815 perm/sec)   p_kst 3.880435e-04   p_cons 5.684783e-04   p_joint 4.130435e-05

Joint ci ratio: 6.276889e-01	ci left: 2.891528e-05	ci right 5.608341e-05	k: 38	n:930000
Cons ci ratio: 1.703862e-01	ci left: 5.203539e-04	ci right 6.182841e-04	k: 528	n:930000
KS ci ratio: 2.059904e-01	ci left: 3.491644e-04	ci right 4.303445e-04	k: 361	n:930000
SLC6A5   930000 perm   516 sec   (1803 perm/sec)   p_kst 3.881720e-04   p_cons 5.677419e-04   p_joint 4.086022e-05

Joint ci ratio: 6.276890e-01	ci left: 2.860767e-05	ci right 5.548678e-05	k: 38	n:940000
Cons ci ratio: 1.692698e-01	ci left: 5.219486e-04	ci right 6.194696e-04	k: 535	n:940000
KS ci ratio: 2.054239e-01	ci left: 3.474679e-04	ci right 4.280035e-04	k: 363	n:940000
SLC6A5   940000 perm   525 sec   (1790 perm/sec)   p_kst 3.861702e-04   p_cons 5.691489e-04   p_joint 4.042553e-05

Joint ci ratio: 6.276891e-01	ci left: 2.830653e-05	ci right 5.490272e-05	k: 38	n:950000
Cons ci ratio: 1.680204e-01	ci left: 5.245201e-04	ci right 6.217249e-04	k: 543	n:950000
KS ci ratio: 2.048621e-01	ci left: 3.458074e-04	ci right 4.257115e-04	k: 365	n:950000
SLC6A5   950000 perm   534 sec   (1779 perm/sec)   p_kst 3.842105e-04   p_cons 5.715789e-04   p_joint 4.000000e-05

Joint ci ratio: 6.197932e-01	ci left: 2.888850e-05	ci right 5.553530e-05	k: 39	n:960000
Cons ci ratio: 1.671014e-01	ci left: 5.250443e-04	ci right 6.217605e-04	k: 549	n:960000
KS ci ratio: 2.045831e-01	ci left: 3.431935e-04	ci right 4.223720e-04	k: 366	n:960000
SLC6A5   960000 perm   543 sec   (1767 perm/sec)   p_kst 3.812500e-04   p_cons 5.718750e-04   p_joint 4.062500e-05

Joint ci ratio: 6.197933e-01	ci left: 2.859068e-05	ci right 5.496277e-05	k: 39	n:970000
Cons ci ratio: 1.666477e-01	ci left: 5.225950e-04	ci right 6.185725e-04	k: 552	n:970000
KS ci ratio: 2.032035e-01	ci left: 3.445469e-04	ci right 4.234351e-04	k: 371	n:970000
SLC6A5   970000 perm   552 sec   (1756 perm/sec)   p_kst 3.824742e-04   p_cons 5.690722e-04   p_joint 4.020619e-05

Joint ci ratio: 6.197935e-01	ci left: 2.829894e-05	ci right 5.440193e-05	k: 39	n:980000
Cons ci ratio: 1.657510e-01	ci left: 5.231302e-04	ci right 6.186374e-04	k: 558	n:980000
KS ci ratio: 2.021197e-01	ci left: 3.449056e-04	ci right 4.234028e-04	k: 375	n:980000
SLC6A5   980000 perm   562 sec   (1745 perm/sec)   p_kst 3.826531e-04   p_cons 5.693878e-04   p_joint 3.979592e-05

Joint ci ratio: 6.121882e-01	ci left: 2.886539e-05	ci right 5.501843e-05	k: 40	n:990000
Cons ci ratio: 1.650147e-01	ci left: 5.226875e-04	ci right 6.176479e-04	k: 563	n:990000
KS ci ratio: 2.010531e-01	ci left: 3.452582e-04	ci right 4.233701e-04	k: 379	n:990000
SLC6A5   990000 perm   571 sec   (1734 perm/sec)   p_kst 3.828283e-04   p_cons 5.686869e-04   p_joint 4.040404e-05

Joint ci ratio: 6.358956e-01	ci left: 2.605154e-05	ci right 5.099927e-05	k: 37	n:1000000
Cons ci ratio: 1.642881e-01	ci left: 5.222546e-04	ci right 6.166772e-04	k: 568	n:1000000
KS ci ratio: 1.994841e-01	ci left: 3.475048e-04	ci right 4.254368e-04	k: 385	n:1000000
SLC6A5   1000000 perm   581 sec   (1721 perm/sec)   p_kst 3.850000e-04   p_cons 5.680000e-04   p_joint 3.700000e-05

Joint ci ratio: 6.276899e-01	ci left: 2.662495e-05	ci right 5.164119e-05	k: 38	n:1010000
Cons ci ratio: 1.638569e-01	ci left: 5.199320e-04	ci right 6.136637e-04	k: 571	n:1010000
KS ci ratio: 1.984585e-01	ci left: 3.478273e-04	ci right 4.253820e-04	k: 389	n:1010000
SLC6A5   1010000 perm   591 sec   (1710 perm/sec)   p_kst 3.851485e-04   p_cons 5.653465e-04   p_joint 3.762376e-05

Joint ci ratio: 6.276901e-01	ci left: 2.636392e-05	ci right 5.113491e-05	k: 38	n:1020000
Cons ci ratio: 1.628633e-01	ci left: 5.214169e-04	ci right 6.147905e-04	k: 578	n:1020000
KS ci ratio: 1.979518e-01	ci left: 3.462807e-04	ci right 4.232696e-04	k: 391	n:1020000
SLC6A5   1020000 perm   600 sec   (1699 perm/sec)   p_kst 3.833333e-04   p_cons 5.666667e-04   p_joint 3.725490e-05

Joint ci ratio: 6.197941e-01	ci left: 2.692519e-05	ci right 5.176108e-05	k: 39	n:1030000
Cons ci ratio: 1.617495e-01	ci left: 5.238062e-04	ci right 6.169038e-04	k: 586	n:1030000
KS ci ratio: 1.977000e-01	ci left: 3.438414e-04	ci right 4.201791e-04	k: 392	n:1030000
SLC6A5   1030000 perm   610 sec   (1689 perm/sec)   p_kst 3.805825e-04   p_cons 5.689320e-04   p_joint 3.786408e-05

Joint ci ratio: 6.197942e-01	ci left: 2.666630e-05	ci right 5.126338e-05	k: 39	n:1040000
Cons ci ratio: 1.607935e-01	ci left: 5.252287e-04	ci right 6.179741e-04	k: 593	n:1040000
KS ci ratio: 1.964541e-01	ci left: 3.451058e-04	ci right 4.211835e-04	k: 397	n:1040000
SLC6A5   1040000 perm   620 sec   (1679 perm/sec)   p_kst 3.817308e-04   p_cons 5.701923e-04   p_joint 3.750000e-05

Joint ci ratio: 6.197943e-01	ci left: 2.641233e-05	ci right 5.077516e-05	k: 39	n:1050000
Cons ci ratio: 1.598543e-01	ci left: 5.266258e-04	ci right 6.190225e-04	k: 600	n:1050000
KS ci ratio: 1.959626e-01	ci left: 3.436302e-04	ci right 4.191705e-04	k: 399	n:1050000
SLC6A5   1050000 perm   629 sec   (1668 perm/sec)   p_kst 3.800000e-04   p_cons 5.714286e-04   p_joint 3.714286e-05

Joint ci ratio: 6.121890e-01	ci left: 2.695918e-05	ci right 5.138517e-05	k: 40	n:1060000
Cons ci ratio: 1.591935e-01	ci left: 5.261863e-04	ci right 6.180878e-04	k: 605	n:1060000
KS ci ratio: 1.952319e-01	ci left: 3.430800e-04	ci right 4.181847e-04	k: 402	n:1060000
SLC6A5   1060000 perm   639 sec   (1658 perm/sec)   p_kst 3.792453e-04   p_cons 5.707547e-04   p_joint 3.773585e-05

Joint ci ratio: 6.121891e-01	ci left: 2.670722e-05	ci right 5.090493e-05	k: 40	n:1070000
Cons ci ratio: 1.581529e-01	ci left: 5.284485e-04	ci right 6.200845e-04	k: 613	n:1070000
KS ci ratio: 1.952322e-01	ci left: 3.398736e-04	ci right 4.142765e-04	k: 402	n:1070000
SLC6A5   1070000 perm   649 sec   (1649 perm/sec)   p_kst 3.757009e-04   p_cons 5.728972e-04   p_joint 3.738318e-05

Joint ci ratio: 6.121892e-01	ci left: 2.645993e-05	ci right 5.043359e-05	k: 40	n:1080000
Cons ci ratio: 1.568802e-01	ci left: 5.324498e-04	ci right 6.239668e-04	k: 623	n:1080000
KS ci ratio: 1.947498e-01	ci left: 3.384880e-04	ci right 4.123828e-04	k: 404	n:1080000
SLC6A5   1080000 perm   659 sec   (1639 perm/sec)   p_kst 3.740741e-04   p_cons 5.768519e-04   p_joint 3.703704e-05

Joint ci ratio: 9.239448e-01	ci left: 9.085463e-06	ci right 2.497112e-05	k: 17	n:1090000
Cons ci ratio: 1.561313e-01	ci left: 5.328540e-04	ci right 6.239623e-04	k: 629	n:1090000
KS ci ratio: 1.937951e-01	ci left: 3.388739e-04	ci right 4.124475e-04	k: 408	n:1090000
SLC6A5   1090000 perm   669 sec   (1629 perm/sec)   p_kst 3.743119e-04   p_cons 5.770642e-04   p_joint 1.559633e-05

Joint ci ratio: 9.239449e-01	ci left: 9.002867e-06	ci right 2.474411e-05	k: 17	n:1100000
Cons ci ratio: 1.557611e-01	ci left: 5.306306e-04	ci right 6.211236e-04	k: 632	n:1100000
KS ci ratio: 1.930883e-01	ci left: 3.383884e-04	ci right 4.115571e-04	k: 411	n:1100000
SLC6A5   1100000 perm   679 sec   (1620 perm/sec)   p_kst 3.736364e-04   p_cons 5.745455e-04   p_joint 1.545455e-05

Joint ci ratio: 9.239450e-01	ci left: 8.921760e-06	ci right 2.452119e-05	k: 17	n:1110000
Cons ci ratio: 1.553935e-01	ci left: 5.284476e-04	ci right 6.183358e-04	k: 635	n:1110000
KS ci ratio: 1.905605e-01	ci left: 3.447740e-04	ci right 4.182345e-04	k: 422	n:1110000
SLC6A5   1110000 perm   689 sec   (1610 perm/sec)   p_kst 3.801802e-04   p_cons 5.720721e-04   p_joint 1.531532e-05

Joint ci ratio: 9.239450e-01	ci left: 8.842101e-06	ci right 2.430225e-05	k: 17	n:1120000
Cons ci ratio: 1.546656e-01	ci left: 5.288787e-04	ci right 6.183798e-04	k: 641	n:1120000
KS ci ratio: 1.903359e-01	ci left: 3.425459e-04	ci right 4.154357e-04	k: 423	n:1120000
SLC6A5   1120000 perm   700 sec   (1601 perm/sec)   p_kst 3.776786e-04   p_cons 5.723214e-04   p_joint 1.517857e-05

Joint ci ratio: 9.239451e-01	ci left: 8.763852e-06	ci right 2.408719e-05	k: 17	n:1130000
Cons ci ratio: 1.543057e-01	ci left: 5.267505e-04	ci right 6.156648e-04	k: 644	n:1130000
KS ci ratio: 1.901121e-01	ci left: 3.403573e-04	ci right 4.126864e-04	k: 424	n:1130000
SLC6A5   1130000 perm   710 sec   (1592 perm/sec)   p_kst 3.752212e-04   p_cons 5.699115e-04   p_joint 1.504425e-05

Joint ci ratio: 9.239452e-01	ci left: 8.686976e-06	ci right 2.387590e-05	k: 17	n:1140000
Cons ci ratio: 1.535930e-01	ci left: 5.271903e-04	ci right 6.157300e-04	k: 650	n:1140000
KS ci ratio: 1.896665e-01	ci left: 3.390427e-04	ci right 4.109040e-04	k: 426	n:1140000
SLC6A5   1140000 perm   720 sec   (1583 perm/sec)   p_kst 3.736842e-04   p_cons 5.701754e-04   p_joint 1.491228e-05

Joint ci ratio: 9.239452e-01	ci left: 8.611437e-06	ci right 2.366828e-05	k: 17	n:1150000
Cons ci ratio: 1.527737e-01	ci left: 5.284597e-04	ci right 6.166959e-04	k: 657	n:1150000
KS ci ratio: 1.892240e-01	ci left: 3.377511e-04	ci right 4.091525e-04	k: 428	n:1150000
SLC6A5   1150000 perm   731 sec   (1574 perm/sec)   p_kst 3.721739e-04   p_cons 5.713043e-04   p_joint 1.478261e-05

Joint ci ratio: 8.993019e-01	ci left: 9.196526e-06	ci right 2.452382e-05	k: 18	n:1160000
Cons ci ratio: 1.525423e-01	ci left: 5.255623e-04	ci right 6.131696e-04	k: 659	n:1160000
KS ci ratio: 1.883479e-01	ci left: 3.381248e-04	ci right 4.092364e-04	k: 432	n:1160000
SLC6A5   1160000 perm   741 sec   (1565 perm/sec)   p_kst 3.724138e-04   p_cons 5.681034e-04   p_joint 1.551724e-05

Joint ci ratio: 8.993020e-01	ci left: 9.117923e-06	ci right 2.431422e-05	k: 18	n:1170000
Cons ci ratio: 1.521970e-01	ci left: 5.235366e-04	ci right 6.105907e-04	k: 662	n:1170000
KS ci ratio: 1.874839e-01	ci left: 3.384928e-04	ci right 4.093181e-04	k: 436	n:1170000
SLC6A5   1170000 perm   752 sec   (1556 perm/sec)   p_kst 3.726496e-04   p_cons 5.658120e-04   p_joint 1.538462e-05

Joint ci ratio: 8.993021e-01	ci left: 9.040652e-06	ci right 2.410816e-05	k: 18	n:1180000
Cons ci ratio: 1.518540e-01	ci left: 5.215455e-04	ci right 6.080552e-04	k: 665	n:1180000
KS ci ratio: 1.870565e-01	ci left: 3.372397e-04	ci right 4.076236e-04	k: 438	n:1180000
SLC6A5   1180000 perm   763 sec   (1547 perm/sec)   p_kst 3.711864e-04   p_cons 5.635593e-04   p_joint 1.525424e-05

Joint ci ratio: 8.993021e-01	ci left: 8.964680e-06	ci right 2.390558e-05	k: 18	n:1190000
Cons ci ratio: 1.510621e-01	ci left: 5.228222e-04	ci right 6.090506e-04	k: 672	n:1190000
KS ci ratio: 1.857910e-01	ci left: 3.392125e-04	ci right 4.094752e-04	k: 444	n:1190000
SLC6A5   1190000 perm   774 sec   (1538 perm/sec)   p_kst 3.731092e-04   p_cons 5.647059e-04   p_joint 1.512605e-05

Joint ci ratio: 9.239455e-01	ci left: 8.252626e-06	ci right 2.268211e-05	k: 17	n:1200000
Cons ci ratio: 1.501720e-01	ci left: 5.248808e-04	ci right 6.108929e-04	k: 680	n:1200000
KS ci ratio: 1.847558e-01	ci left: 3.403591e-04	ci right 4.104226e-04	k: 449	n:1200000
SLC6A5   1200000 perm   785 sec   (1529 perm/sec)   p_kst 3.741667e-04   p_cons 5.666667e-04   p_joint 1.416667e-05

Joint ci ratio: 9.239456e-01	ci left: 8.184423e-06	ci right 2.249465e-05	k: 17	n:1210000
Cons ci ratio: 1.496238e-01	ci left: 5.245202e-04	ci right 6.101313e-04	k: 685	n:1210000
KS ci ratio: 1.847561e-01	ci left: 3.375462e-04	ci right 4.070307e-04	k: 449	n:1210000
SLC6A5   1210000 perm   795 sec   (1521 perm/sec)   p_kst 3.710744e-04   p_cons 5.661157e-04   p_joint 1.404959e-05

Joint ci ratio: 8.993023e-01	ci left: 8.744236e-06	ci right 2.331774e-05	k: 18	n:1220000
Cons ci ratio: 1.487588e-01	ci left: 5.265335e-04	ci right 6.119321e-04	k: 693	n:1220000
KS ci ratio: 1.835364e-01	ci left: 3.394708e-04	ci right 4.088388e-04	k: 455	n:1220000
SLC6A5   1220000 perm   807 sec   (1513 perm/sec)   p_kst 3.729508e-04   p_cons 5.680328e-04   p_joint 1.475410e-05

Joint ci ratio: 8.765312e-01	ci left: 9.300221e-06	ci right 2.412254e-05	k: 19	n:1230000
Cons ci ratio: 1.482258e-01	ci left: 5.261667e-04	ci right 6.111730e-04	k: 698	n:1230000
KS ci ratio: 1.819470e-01	ci left: 3.429175e-04	ci right 4.123161e-04	k: 463	n:1230000
SLC6A5   1230000 perm   818 sec   (1505 perm/sec)   p_kst 3.764228e-04   p_cons 5.674797e-04   p_joint 1.544715e-05

Joint ci ratio: 8.765312e-01	ci left: 9.225219e-06	ci right 2.392800e-05	k: 19	n:1240000
Cons ci ratio: 1.476986e-01	ci left: 5.258064e-04	ci right 6.104257e-04	k: 703	n:1240000
KS ci ratio: 1.809745e-01	ci left: 3.440011e-04	ci right 4.132062e-04	k: 468	n:1240000
SLC6A5   1240000 perm   829 sec   (1497 perm/sec)   p_kst 3.774194e-04   p_cons 5.669355e-04   p_joint 1.532258e-05

Joint ci ratio: 8.765313e-01	ci left: 9.151417e-06	ci right 2.373658e-05	k: 19	n:1250000
Cons ci ratio: 1.468663e-01	ci left: 5.277641e-04	ci right 6.121779e-04	k: 711	n:1250000
KS ci ratio: 1.803985e-01	ci left: 3.435406e-04	ci right 4.124090e-04	k: 471	n:1250000
SLC6A5   1250000 perm   840 sec   (1488 perm/sec)   p_kst 3.768000e-04   p_cons 5.688000e-04   p_joint 1.520000e-05

Joint ci ratio: 8.765313e-01	ci left: 9.078786e-06	ci right 2.354820e-05	k: 19	n:1260000
Cons ci ratio: 1.465580e-01	ci left: 5.258690e-04	ci right 6.097877e-04	k: 714	n:1260000
KS ci ratio: 1.796389e-01	ci left: 3.438456e-04	ci right 4.124534e-04	k: 475	n:1260000
SLC6A5   1260000 perm   851 sec   (1480 perm/sec)   p_kst 3.769841e-04   p_cons 5.666667e-04   p_joint 1.507937e-05

Joint ci ratio: 8.765314e-01	ci left: 9.007300e-06	ci right 2.336278e-05	k: 19	n:1270000
Cons ci ratio: 1.459469e-01	ci left: 5.262799e-04	ci right 6.098834e-04	k: 720	n:1270000
KS ci ratio: 1.790755e-01	ci left: 3.433943e-04	ci right 4.116739e-04	k: 478	n:1270000
SLC6A5   1270000 perm   863 sec   (1472 perm/sec)   p_kst 3.763780e-04   p_cons 5.669291e-04   p_joint 1.496063e-05

Joint ci ratio: 8.765315e-01	ci left: 8.936930e-06	ci right 2.318026e-05	k: 19	n:1280000
Cons ci ratio: 1.457451e-01	ci left: 5.236737e-04	ci right 6.067382e-04	k: 722	n:1280000
KS ci ratio: 1.785174e-01	ci left: 3.429504e-04	ci right 4.109062e-04	k: 481	n:1280000
SLC6A5   1280000 perm   875 sec   (1464 perm/sec)   p_kst 3.757812e-04   p_cons 5.640625e-04   p_joint 1.484375e-05

Joint ci ratio: 8.765315e-01	ci left: 8.867651e-06	ci right 2.300057e-05	k: 19	n:1290000
Cons ci ratio: 1.451441e-01	ci left: 5.240962e-04	ci right 6.068551e-04	k: 728	n:1290000
KS ci ratio: 1.774164e-01	ci left: 3.447359e-04	ci right 4.125790e-04	k: 487	n:1290000
SLC6A5   1290000 perm   886 sec   (1456 perm/sec)   p_kst 3.775194e-04   p_cons 5.643411e-04   p_joint 1.472868e-05

Joint ci ratio: 8.765316e-01	ci left: 8.799438e-06	ci right 2.282364e-05	k: 19	n:1300000
Cons ci ratio: 1.446489e-01	ci left: 5.237714e-04	ci right 6.061725e-04	k: 733	n:1300000
KS ci ratio: 1.765144e-01	ci left: 3.457599e-04	ci right 4.134216e-04	k: 492	n:1300000
SLC6A5   1300000 perm   898 sec   (1448 perm/sec)   p_kst 3.784615e-04   p_cons 5.638462e-04   p_joint 1.461538e-05

Joint ci ratio: 8.765316e-01	ci left: 8.732267e-06	ci right 2.264941e-05	k: 19	n:1310000
Cons ci ratio: 1.442565e-01	ci left: 5.227162e-04	ci right 6.047090e-04	k: 737	n:1310000
KS ci ratio: 1.758026e-01	ci left: 3.460393e-04	ci right 4.134537e-04	k: 496	n:1310000
SLC6A5   1310000 perm   910 sec   (1440 perm/sec)   p_kst 3.786260e-04   p_cons 5.625954e-04   p_joint 1.450382e-05

Joint ci ratio: 8.765317e-01	ci left: 8.666113e-06	ci right 2.247783e-05	k: 19	n:1320000
Cons ci ratio: 1.439643e-01	ci left: 5.209470e-04	ci right 6.024825e-04	k: 740	n:1320000
KS ci ratio: 1.754501e-01	ci left: 3.448663e-04	ci right 4.119032e-04	k: 498	n:1320000
SLC6A5   1320000 perm   921 sec   (1433 perm/sec)   p_kst 3.772727e-04   p_cons 5.606061e-04   p_joint 1.439394e-05

Joint ci ratio: 8.554071e-01	ci left: 9.185376e-06	ci right 2.322425e-05	k: 20	n:1330000
Cons ci ratio: 1.434811e-01	ci left: 5.206543e-04	ci right 6.018470e-04	k: 745	n:1330000
KS ci ratio: 1.747510e-01	ci left: 3.451491e-04	ci right 4.119453e-04	k: 502	n:1330000
SLC6A5   1330000 perm   933 sec   (1425 perm/sec)   p_kst 3.774436e-04   p_cons 5.601504e-04   p_joint 1.503759e-05

Joint ci ratio: 8.554071e-01	ci left: 9.116829e-06	ci right 2.305093e-05	k: 20	n:1340000
Cons ci ratio: 1.427178e-01	ci left: 5.225252e-04	ci right 6.035394e-04	k: 753	n:1340000
KS ci ratio: 1.742323e-01	ci left: 3.447143e-04	ci right 4.112076e-04	k: 505	n:1340000
SLC6A5   1340000 perm   945 sec   (1418 perm/sec)   p_kst 3.768657e-04   p_cons 5.619403e-04   p_joint 1.492537e-05

Joint ci ratio: 8.554072e-01	ci left: 9.049297e-06	ci right 2.288019e-05	k: 20	n:1350000
Cons ci ratio: 1.422469e-01	ci left: 5.222263e-04	ci right 6.029044e-04	k: 758	n:1350000
KS ci ratio: 1.730393e-01	ci left: 3.471208e-04	ci right 4.135719e-04	k: 512	n:1350000
SLC6A5   1350000 perm   957 sec   (1411 perm/sec)   p_kst 3.792593e-04   p_cons 5.614815e-04   p_joint 1.481481e-05

Joint ci ratio: 8.554072e-01	ci left: 8.982757e-06	ci right 2.271195e-05	k: 20	n:1360000
Cons ci ratio: 1.420601e-01	ci left: 5.198047e-04	ci right 5.999941e-04	k: 760	n:1360000
KS ci ratio: 1.727031e-01	ci left: 3.459754e-04	ci right 4.120651e-04	k: 514	n:1360000
SLC6A5   1360000 perm   969 sec   (1403 perm/sec)   p_kst 3.779412e-04   p_cons 5.588235e-04   p_joint 1.470588e-05

Joint ci ratio: 8.554073e-01	ci left: 8.917190e-06	ci right 2.254617e-05	k: 20	n:1370000
Cons ci ratio: 1.413191e-01	ci left: 5.216429e-04	ci right 6.016609e-04	k: 768	n:1370000
KS ci ratio: 1.720362e-01	ci left: 3.462437e-04	ci right 4.121029e-04	k: 518	n:1370000
SLC6A5   1370000 perm   981 sec   (1396 perm/sec)   p_kst 3.781022e-04   p_cons 5.605839e-04   p_joint 1.459854e-05

Joint ci ratio: 8.357398e-01	ci left: 9.419829e-06	ci right 2.326131e-05	k: 21	n:1380000
Cons ci ratio: 1.405896e-01	ci left: 5.234556e-04	ci right 6.033024e-04	k: 776	n:1380000
KS ci ratio: 1.715412e-01	ci left: 3.458152e-04	ci right 4.113839e-04	k: 521	n:1380000
SLC6A5   1380000 perm   993 sec   (1389 perm/sec)   p_kst 3.775362e-04   p_cons 5.623188e-04   p_joint 1.521739e-05

Joint ci ratio: 8.357399e-01	ci left: 9.352060e-06	ci right 2.309396e-05	k: 21	n:1390000
Cons ci ratio: 1.400499e-01	ci left: 5.238548e-04	ci right 6.034300e-04	k: 782	n:1390000
KS ci ratio: 1.710505e-01	ci left: 3.453930e-04	ci right 4.106750e-04	k: 524	n:1390000
SLC6A5   1390000 perm   1006 sec   (1382 perm/sec)   p_kst 3.769784e-04   p_cons 5.625899e-04   p_joint 1.510791e-05

Joint ci ratio: 8.357399e-01	ci left: 9.285260e-06	ci right 2.292900e-05	k: 21	n:1400000
Cons ci ratio: 1.397825e-01	ci left: 5.221808e-04	ci right 6.013377e-04	k: 785	n:1400000
KS ci ratio: 1.702416e-01	ci left: 3.463449e-04	ci right 4.114655e-04	k: 529	n:1400000
SLC6A5   1400000 perm   1018 sec   (1375 perm/sec)   p_kst 3.778571e-04   p_cons 5.607143e-04   p_joint 1.500000e-05

Joint ci ratio: 8.173695e-01	ci left: 9.778240e-06	ci right 2.362279e-05	k: 22	n:1410000
Cons ci ratio: 1.392520e-01	ci left: 5.225841e-04	ci right 6.014766e-04	k: 791	n:1410000
KS ci ratio: 1.692860e-01	ci left: 3.479631e-04	ci right 4.129832e-04	k: 535	n:1410000
SLC6A5   1410000 perm   1030 sec   (1369 perm/sec)   p_kst 3.794326e-04   p_cons 5.609929e-04   p_joint 1.560284e-05

Joint ci ratio: 8.173696e-01	ci left: 9.709379e-06	ci right 2.345643e-05	k: 22	n:1420000
Cons ci ratio: 1.383809e-01	ci left: 5.257017e-04	ci right 6.045275e-04	k: 801	n:1420000
KS ci ratio: 1.685018e-01	ci left: 3.488849e-04	ci right 4.137446e-04	k: 540	n:1420000
SLC6A5   1420000 perm   1043 sec   (1362 perm/sec)   p_kst 3.802817e-04   p_cons 5.640845e-04   p_joint 1.549296e-05

Joint ci ratio: 8.173696e-01	ci left: 9.641481e-06	ci right 2.329240e-05	k: 22	n:1430000
Cons ci ratio: 1.376957e-01	ci left: 5.274267e-04	ci right 6.060875e-04	k: 809	n:1430000
KS ci ratio: 1.683464e-01	ci left: 3.471150e-04	ci right 4.115801e-04	k: 541	n:1430000
SLC6A5   1430000 perm   1055 sec   (1355 perm/sec)   p_kst 3.783217e-04   p_cons 5.657343e-04   p_joint 1.538462e-05

Joint ci ratio: 8.173697e-01	ci left: 9.574526e-06	ci right 2.313065e-05	k: 22	n:1440000
Cons ci ratio: 1.371045e-01	ci left: 5.284581e-04	ci right 6.069066e-04	k: 816	n:1440000
KS ci ratio: 1.680368e-01	ci left: 3.460348e-04	ci right 4.101692e-04	k: 543	n:1440000
SLC6A5   1440000 perm   1068 sec   (1348 perm/sec)   p_kst 3.770833e-04   p_cons 5.666667e-04   p_joint 1.527778e-05

Joint ci ratio: 8.173697e-01	ci left: 9.508495e-06	ci right 2.297113e-05	k: 22	n:1450000
Cons ci ratio: 1.364380e-01	ci left: 5.301420e-04	ci right 6.084269e-04	k: 824	n:1450000
KS ci ratio: 1.677289e-01	ci left: 3.449697e-04	ci right 4.087777e-04	k: 545	n:1450000
SLC6A5   1450000 perm   1081 sec   (1342 perm/sec)   p_kst 3.758621e-04   p_cons 5.682759e-04   p_joint 1.517241e-05

Joint ci ratio: 8.173698e-01	ci left: 9.443368e-06	ci right 2.281379e-05	k: 22	n:1460000
Cons ci ratio: 1.361085e-01	ci left: 5.291572e-04	ci right 6.070927e-04	k: 828	n:1460000
KS ci ratio: 1.672700e-01	ci left: 3.445756e-04	ci right 4.081187e-04	k: 548	n:1460000
SLC6A5   1460000 perm   1094 sec   (1335 perm/sec)   p_kst 3.753425e-04   p_cons 5.671233e-04   p_joint 1.506849e-05

Joint ci ratio: 8.173698e-01	ci left: 9.379127e-06	ci right 2.265860e-05	k: 22	n:1470000
Cons ci ratio: 1.357814e-01	ci left: 5.281860e-04	ci right 6.057764e-04	k: 832	n:1470000
KS ci ratio: 1.668149e-01	ci left: 3.441870e-04	ci right 4.074685e-04	k: 551	n:1470000
SLC6A5   1470000 perm   1106 sec   (1329 perm/sec)   p_kst 3.748299e-04   p_cons 5.659864e-04   p_joint 1.496599e-05

Joint ci ratio: 8.173699e-01	ci left: 9.315754e-06	ci right 2.250550e-05	k: 22	n:1480000
Cons ci ratio: 1.352950e-01	ci left: 5.285338e-04	ci right 6.058748e-04	k: 838	n:1480000
KS ci ratio: 1.665136e-01	ci left: 3.431564e-04	ci right 4.061230e-04	k: 553	n:1480000
SLC6A5   1480000 perm   1119 sec   (1322 perm/sec)   p_kst 3.736486e-04   p_cons 5.662162e-04   p_joint 1.486486e-05

Joint ci ratio: 8.173699e-01	ci left: 9.253232e-06	ci right 2.235446e-05	k: 22	n:1490000
Cons ci ratio: 1.348138e-01	ci left: 5.288774e-04	ci right 6.059713e-04	k: 844	n:1490000
KS ci ratio: 1.657672e-01	ci left: 3.440695e-04	ci right 4.068924e-04	k: 558	n:1490000
SLC6A5   1490000 perm   1132 sec   (1316 perm/sec)   p_kst 3.744966e-04   p_cons 5.664430e-04   p_joint 1.476510e-05

Joint ci ratio: 8.173700e-01	ci left: 9.191544e-06	ci right 2.220543e-05	k: 22	n:1500000
Cons ci ratio: 1.346547e-01	ci left: 5.266399e-04	ci right 6.033098e-04	k: 846	n:1500000
KS ci ratio: 1.653242e-01	ci left: 3.436929e-04	ci right 4.062626e-04	k: 561	n:1500000
SLC6A5   1500000 perm   1146 sec   (1309 perm/sec)   p_kst 3.740000e-04   p_cons 5.640000e-04   p_joint 1.466667e-05

Joint ci ratio: 8.173700e-01	ci left: 9.130673e-06	ci right 2.205837e-05	k: 22	n:1510000
Cons ci ratio: 1.342590e-01	ci left: 5.263521e-04	ci right 6.027370e-04	k: 851	n:1510000
KS ci ratio: 1.645936e-01	ci left: 3.445913e-04	ci right 4.070199e-04	k: 566	n:1510000
SLC6A5   1510000 perm   1159 sec   (1303 perm/sec)   p_kst 3.748344e-04   p_cons 5.635762e-04   p_joint 1.456954e-05

Joint ci ratio: 8.173701e-01	ci left: 9.070602e-06	ci right 2.191325e-05	k: 22	n:1520000
Cons ci ratio: 1.339451e-01	ci left: 5.254325e-04	ci right 6.014914e-04	k: 855	n:1520000
KS ci ratio: 1.643041e-01	ci left: 3.435859e-04	ci right 4.057121e-04	k: 568	n:1520000
SLC6A5   1520000 perm   1172 sec   (1297 perm/sec)   p_kst 3.736842e-04   p_cons 5.625000e-04   p_joint 1.447368e-05

Joint ci ratio: 8.173701e-01	ci left: 9.011317e-06	ci right 2.177003e-05	k: 22	n:1530000
Cons ci ratio: 1.336333e-01	ci left: 5.245252e-04	ci right 6.002620e-04	k: 859	n:1530000
KS ci ratio: 1.630197e-01	ci left: 3.469817e-04	ci right 4.091834e-04	k: 577	n:1530000
SLC6A5   1530000 perm   1185 sec   (1291 perm/sec)   p_kst 3.771242e-04   p_cons 5.614379e-04   p_joint 1.437908e-05

Joint ci ratio: 8.173701e-01	ci left: 8.952802e-06	ci right 2.162866e-05	k: 22	n:1540000
Cons ci ratio: 1.329393e-01	ci left: 5.267685e-04	ci right 6.024030e-04	k: 868	n:1540000
KS ci ratio: 1.623190e-01	ci left: 3.478432e-04	ci right 4.099051e-04	k: 582	n:1540000
SLC6A5   1540000 perm   1199 sec   (1285 perm/sec)   p_kst 3.779221e-04   p_cons 5.636364e-04   p_joint 1.428571e-05

Joint ci ratio: 8.173702e-01	ci left: 8.895042e-06	ci right 2.148912e-05	k: 22	n:1550000
Cons ci ratio: 1.327868e-01	ci left: 5.246174e-04	ci right 5.998498e-04	k: 870	n:1550000
KS ci ratio: 1.620414e-01	ci left: 3.468370e-04	ci right 4.086033e-04	k: 584	n:1550000
SLC6A5   1550000 perm   1213 sec   (1278 perm/sec)   p_kst 3.767742e-04   p_cons 5.612903e-04   p_joint 1.419355e-05

Joint ci ratio: 8.173702e-01	ci left: 8.838022e-06	ci right 2.135137e-05	k: 22	n:1560000
Cons ci ratio: 1.326347e-01	ci left: 5.224939e-04	ci right 5.973292e-04	k: 872	n:1560000
KS ci ratio: 1.616276e-01	ci left: 3.464589e-04	ci right 4.079849e-04	k: 587	n:1560000
SLC6A5   1560000 perm   1227 sec   (1272 perm/sec)   p_kst 3.762821e-04   p_cons 5.589744e-04   p_joint 1.410256e-05

Joint ci ratio: 8.173703e-01	ci left: 8.781729e-06	ci right 2.121538e-05	k: 22	n:1570000
Cons ci ratio: 1.319561e-01	ci left: 5.247087e-04	ci right 5.994466e-04	k: 881	n:1570000
KS ci ratio: 1.612169e-01	ci left: 3.460858e-04	ci right 4.073742e-04	k: 590	n:1570000
SLC6A5   1570000 perm   1240 sec   (1266 perm/sec)   p_kst 3.757962e-04   p_cons 5.611465e-04   p_joint 1.401274e-05

Joint ci ratio: 8.173703e-01	ci left: 8.726148e-06	ci right 2.108110e-05	k: 22	n:1580000
Cons ci ratio: 1.313616e-01	ci left: 5.262843e-04	ci right 6.008826e-04	k: 889	n:1580000
KS ci ratio: 1.605391e-01	ci left: 3.469325e-04	ci right 4.080878e-04	k: 595	n:1580000
SLC6A5   1580000 perm   1254 sec   (1260 perm/sec)   p_kst 3.765823e-04   p_cons 5.626582e-04   p_joint 1.392405e-05

Joint ci ratio: 8.173703e-01	ci left: 8.671267e-06	ci right 2.094852e-05	k: 22	n:1590000
Cons ci ratio: 1.310675e-01	ci left: 5.254075e-04	ci right 5.997017e-04	k: 893	n:1590000
KS ci ratio: 1.604047e-01	ci left: 3.453542e-04	ci right 4.061754e-04	k: 596	n:1590000
SLC6A5   1590000 perm   1268 sec   (1254 perm/sec)   p_kst 3.748428e-04   p_cons 5.616352e-04   p_joint 1.383648e-05

Joint ci ratio: 8.173704e-01	ci left: 8.617071e-06	ci right 2.081759e-05	k: 22	n:1600000
Cons ci ratio: 1.306299e-01	ci left: 5.257509e-04	ci right 5.998263e-04	k: 899	n:1600000
KS ci ratio: 1.598701e-01	ci left: 3.455956e-04	ci right 4.062369e-04	k: 600	n:1600000
SLC6A5   1600000 perm   1281 sec   (1249 perm/sec)   p_kst 3.750000e-04   p_cons 5.618750e-04   p_joint 1.375000e-05

Joint ci ratio: 8.173704e-01	ci left: 8.563549e-06	ci right 2.068829e-05	k: 22	n:1610000
Cons ci ratio: 1.301248e-01	ci left: 5.266914e-04	ci right 6.005902e-04	k: 906	n:1610000
KS ci ratio: 1.593407e-01	ci left: 3.458343e-04	ci right 4.062973e-04	k: 604	n:1610000
SLC6A5   1610000 perm   1295 sec   (1243 perm/sec)   p_kst 3.751553e-04   p_cons 5.627329e-04   p_joint 1.366460e-05

Joint ci ratio: 8.173704e-01	ci left: 8.510687e-06	ci right 2.056059e-05	k: 22	n:1620000
Cons ci ratio: 1.294838e-01	ci left: 5.288155e-04	ci right 6.026186e-04	k: 915	n:1620000
KS ci ratio: 1.588165e-01	ci left: 3.460703e-04	ci right 4.063566e-04	k: 608	n:1620000
SLC6A5   1620000 perm   1309 sec   (1238 perm/sec)   p_kst 3.753086e-04   p_cons 5.648148e-04   p_joint 1.358025e-05

Joint ci ratio: 8.173705e-01	ci left: 8.458474e-06	ci right 2.043445e-05	k: 22	n:1630000
Cons ci ratio: 1.290618e-01	ci left: 5.291331e-04	ci right 6.027216e-04	k: 921	n:1630000
KS ci ratio: 1.585565e-01	ci left: 3.451254e-04	ci right 4.051393e-04	k: 610	n:1630000
SLC6A5   1630000 perm   1323 sec   (1232 perm/sec)   p_kst 3.742331e-04   p_cons 5.650307e-04   p_joint 1.349693e-05

Joint ci ratio: 8.173705e-01	ci left: 8.406898e-06	ci right 2.030985e-05	k: 22	n:1640000
Cons ci ratio: 1.286439e-01	ci left: 5.294473e-04	ci right 6.028228e-04	k: 927	n:1640000
KS ci ratio: 1.579116e-01	ci left: 3.459491e-04	ci right 4.058383e-04	k: 615	n:1640000
SLC6A5   1640000 perm   1337 sec   (1227 perm/sec)   p_kst 3.750000e-04   p_cons 5.652439e-04   p_joint 1.341463e-05

Joint ci ratio: 8.173706e-01	ci left: 8.355947e-06	ci right 2.018676e-05	k: 22	n:1650000
Cons ci ratio: 1.285056e-01	ci left: 5.274117e-04	ci right 6.004205e-04	k: 929	n:1650000
KS ci ratio: 1.572745e-01	ci left: 3.467632e-04	ci right 4.065284e-04	k: 620	n:1650000
SLC6A5   1650000 perm   1351 sec   (1221 perm/sec)   p_kst 3.757576e-04   p_cons 5.630303e-04   p_joint 1.333333e-05

Joint ci ratio: 8.173706e-01	ci left: 8.305610e-06	ci right 2.006515e-05	k: 22	n:1660000
Cons ci ratio: 1.279563e-01	ci left: 5.288992e-04	ci right 6.017772e-04	k: 937	n:1660000
KS ci ratio: 1.571482e-01	ci left: 3.452530e-04	ci right 4.047056e-04	k: 621	n:1660000
SLC6A5   1660000 perm   1366 sec   (1215 perm/sec)   p_kst 3.740964e-04   p_cons 5.644578e-04   p_joint 1.325301e-05

Joint ci ratio: 8.001607e-01	ci left: 8.730575e-06	ci right 2.066537e-05	k: 23	n:1670000
Cons ci ratio: 1.274141e-01	ci left: 5.303696e-04	ci right 6.031171e-04	k: 945	n:1670000
KS ci ratio: 1.567706e-01	ci left: 3.449115e-04	ci right 4.041491e-04	k: 624	n:1670000
SLC6A5   1670000 perm   1380 sec   (1210 perm/sec)   p_kst 3.736527e-04   p_cons 5.658683e-04   p_joint 1.377246e-05

Joint ci ratio: 8.001607e-01	ci left: 8.678607e-06	ci right 2.054237e-05	k: 23	n:1680000
Cons ci ratio: 1.268121e-01	ci left: 5.323994e-04	ci right 6.050545e-04	k: 954	n:1680000
KS ci ratio: 1.563957e-01	ci left: 3.445742e-04	ci right 4.035991e-04	k: 627	n:1680000
SLC6A5   1680000 perm   1395 sec   (1205 perm/sec)   p_kst 3.732143e-04   p_cons 5.678571e-04   p_joint 1.369048e-05

Joint ci ratio: 8.001607e-01	ci left: 8.627254e-06	ci right 2.042081e-05	k: 23	n:1690000
Cons ci ratio: 1.266135e-01	ci left: 5.309680e-04	ci right 6.033057e-04	k: 957	n:1690000
KS ci ratio: 1.561474e-01	ci left: 3.436724e-04	ci right 4.024406e-04	k: 629	n:1690000
SLC6A5   1690000 perm   1409 sec   (1200 perm/sec)   p_kst 3.721893e-04   p_cons 5.662722e-04   p_joint 1.360947e-05

Joint ci ratio: 7.839940e-01	ci left: 9.045463e-06	ci right 2.100587e-05	k: 24	n:1700000
Cons ci ratio: 1.264158e-01	ci left: 5.295535e-04	ci right 6.015774e-04	k: 960	n:1700000
KS ci ratio: 1.557770e-01	ci left: 3.433466e-04	ci right 4.019068e-04	k: 632	n:1700000
SLC6A5   1700000 perm   1423 sec   (1195 perm/sec)   p_kst 3.717647e-04   p_cons 5.647059e-04   p_joint 1.411765e-05

Joint ci ratio: 7.839940e-01	ci left: 8.992566e-06	ci right 2.088303e-05	k: 24	n:1710000
Cons ci ratio: 1.259579e-01	ci left: 5.304211e-04	ci right 6.022821e-04	k: 967	n:1710000
KS ci ratio: 1.555315e-01	ci left: 3.424628e-04	ci right 4.007716e-04	k: 634	n:1710000
SLC6A5   1710000 perm   1438 sec   (1189 perm/sec)   p_kst 3.707602e-04   p_cons 5.654971e-04   p_joint 1.403509e-05

Joint ci ratio: 7.839941e-01	ci left: 8.940283e-06	ci right 2.076161e-05	k: 24	n:1720000
Cons ci ratio: 1.255693e-01	ci left: 5.307158e-04	ci right 6.023785e-04	k: 973	n:1720000
KS ci ratio: 1.550439e-01	ci left: 3.427069e-04	ci right 4.008574e-04	k: 638	n:1720000
SLC6A5   1720000 perm   1452 sec   (1184 perm/sec)   p_kst 3.709302e-04   p_cons 5.656977e-04   p_joint 1.395349e-05

Joint ci ratio: 7.839941e-01	ci left: 8.888605e-06	ci right 2.064161e-05	k: 24	n:1730000
Cons ci ratio: 1.252483e-01	ci left: 5.304476e-04	ci right 6.018773e-04	k: 978	n:1730000
KS ci ratio: 1.545609e-01	ci left: 3.429486e-04	ci right 4.009420e-04	k: 642	n:1730000
SLC6A5   1730000 perm   1467 sec   (1179 perm/sec)   p_kst 3.710983e-04   p_cons 5.653179e-04   p_joint 1.387283e-05

Joint ci ratio: 7.839941e-01	ci left: 8.837521e-06	ci right 2.052298e-05	k: 24	n:1740000
Cons ci ratio: 1.248028e-01	ci left: 5.312963e-04	ci right 6.025670e-04	k: 985	n:1740000
KS ci ratio: 1.542017e-01	ci left: 3.426351e-04	ci right 4.004284e-04	k: 645	n:1740000
SLC6A5   1740000 perm   1482 sec   (1174 perm/sec)   p_kst 3.706897e-04   p_cons 5.660920e-04   p_joint 1.379310e-05

Joint ci ratio: 7.687693e-01	ci left: 9.244982e-06	ci right 2.108846e-05	k: 25	n:1750000
Cons ci ratio: 1.244876e-01	ci left: 5.310283e-04	ci right 6.020700e-04	k: 990	n:1750000
KS ci ratio: 1.538449e-01	ci left: 3.423254e-04	ci right 3.999205e-04	k: 648	n:1750000
SLC6A5   1750000 perm   1497 sec   (1169 perm/sec)   p_kst 3.702857e-04   p_cons 5.657143e-04   p_joint 1.428571e-05

Joint ci ratio: 7.687694e-01	ci left: 9.192453e-06	ci right 2.096864e-05	k: 25	n:1760000
Cons ci ratio: 1.241124e-01	ci left: 5.313142e-04	ci right 6.021641e-04	k: 996	n:1760000
KS ci ratio: 1.534906e-01	ci left: 3.420194e-04	ci right 3.994183e-04	k: 651	n:1760000
SLC6A5   1760000 perm   1512 sec   (1164 perm/sec)   p_kst 3.698864e-04   p_cons 5.659091e-04   p_joint 1.420455e-05

Joint ci ratio: 7.543984e-01	ci left: 9.595538e-06	ci right 2.152310e-05	k: 26	n:1770000
Cons ci ratio: 1.236174e-01	ci left: 5.326922e-04	ci right 6.034218e-04	k: 1004	n:1770000
KS ci ratio: 1.533731e-01	ci left: 3.406303e-04	ci right 3.977484e-04	k: 652	n:1770000
SLC6A5   1770000 perm   1527 sec   (1159 perm/sec)   p_kst 3.683616e-04   p_cons 5.672316e-04   p_joint 1.468927e-05

Joint ci ratio: 7.543984e-01	ci left: 9.541630e-06	ci right 2.140219e-05	k: 26	n:1780000
Cons ci ratio: 1.233111e-01	ci left: 5.324218e-04	ci right 6.029275e-04	k: 1009	n:1780000
KS ci ratio: 1.527892e-01	ci left: 3.414181e-04	ci right 3.984303e-04	k: 657	n:1780000
SLC6A5   1780000 perm   1542 sec   (1154 perm/sec)   p_kst 3.691011e-04   p_cons 5.668539e-04   p_joint 1.460674e-05

Joint ci ratio: 7.543985e-01	ci left: 9.488325e-06	ci right 2.128262e-05	k: 26	n:1790000
Cons ci ratio: 1.231284e-01	ci left: 5.310717e-04	ci right 6.012868e-04	k: 1012	n:1790000
KS ci ratio: 1.524421e-01	ci left: 3.411227e-04	ci right 3.979444e-04	k: 660	n:1790000
SLC6A5   1790000 perm   1558 sec   (1149 perm/sec)   p_kst 3.687151e-04   p_cons 5.653631e-04   p_joint 1.452514e-05

Joint ci ratio: 7.543985e-01	ci left: 9.435612e-06	ci right 2.116439e-05	k: 26	n:1800000
Cons ci ratio: 1.228257e-01	ci left: 5.308136e-04	ci right 6.008095e-04	k: 1017	n:1800000
KS ci ratio: 1.520974e-01	ci left: 3.408307e-04	ci right 3.974637e-04	k: 663	n:1800000
SLC6A5   1800000 perm   1574 sec   (1144 perm/sec)   p_kst 3.683333e-04   p_cons 5.650000e-04   p_joint 1.444444e-05

Joint ci ratio: 7.408044e-01	ci left: 9.830503e-06	ci right 2.170356e-05	k: 27	n:1810000
Cons ci ratio: 1.224653e-01	ci left: 5.310941e-04	ci right 6.009067e-04	k: 1023	n:1810000
KS ci ratio: 1.519831e-01	ci left: 3.394791e-04	ci right 3.958413e-04	k: 664	n:1810000
SLC6A5   1810000 perm   1589 sec   (1139 perm/sec)   p_kst 3.668508e-04   p_cons 5.651934e-04   p_joint 1.491713e-05

Joint ci ratio: 7.408045e-01	ci left: 9.776489e-06	ci right 2.158431e-05	k: 27	n:1820000
Cons ci ratio: 1.222269e-01	ci left: 5.303066e-04	ci right 5.998701e-04	k: 1027	n:1820000
KS ci ratio: 1.511893e-01	ci left: 3.413142e-04	ci right 3.976582e-04	k: 671	n:1820000
SLC6A5   1820000 perm   1605 sec   (1134 perm/sec)   p_kst 3.686813e-04   p_cons 5.642857e-04   p_joint 1.483516e-05

Joint ci ratio: 7.408045e-01	ci left: 9.723066e-06	ci right 2.146637e-05	k: 27	n:1830000
Cons ci ratio: 1.220490e-01	ci left: 5.289979e-04	ci right 5.982815e-04	k: 1030	n:1830000
KS ci ratio: 1.508530e-01	ci left: 3.410264e-04	ci right 3.971865e-04	k: 674	n:1830000
SLC6A5   1830000 perm   1620 sec   (1129 perm/sec)   p_kst 3.683060e-04   p_cons 5.628415e-04   p_joint 1.475410e-05

Joint ci ratio: 7.279198e-01	ci left: 1.011187e-05	ci right 2.199329e-05	k: 28	n:1840000
Cons ci ratio: 1.218130e-01	ci left: 5.282306e-04	ci right 5.972702e-04	k: 1034	n:1840000
KS ci ratio: 1.505189e-01	ci left: 3.407420e-04	ci right 3.967197e-04	k: 677	n:1840000
SLC6A5   1840000 perm   1636 sec   (1125 perm/sec)   p_kst 3.679348e-04   p_cons 5.619565e-04   p_joint 1.521739e-05

Joint ci ratio: 7.279198e-01	ci left: 1.005721e-05	ci right 2.187441e-05	k: 28	n:1850000
Cons ci ratio: 1.214031e-01	ci left: 5.290440e-04	ci right 5.979405e-04	k: 1041	n:1850000
KS ci ratio: 1.501870e-01	ci left: 3.404608e-04	ci right 3.962579e-04	k: 680	n:1850000
SLC6A5   1850000 perm   1652 sec   (1120 perm/sec)   p_kst 3.675676e-04   p_cons 5.627027e-04   p_joint 1.513514e-05

Joint ci ratio: 7.156848e-01	ci left: 1.044183e-05	ci right 2.239177e-05	k: 29	n:1860000
Cons ci ratio: 1.210551e-01	ci left: 5.293276e-04	ci right 5.980494e-04	k: 1047	n:1860000
KS ci ratio: 1.494209e-01	ci left: 3.422527e-04	ci right 3.980319e-04	k: 687	n:1860000
SLC6A5   1860000 perm   1667 sec   (1116 perm/sec)   p_kst 3.693548e-04   p_cons 5.629032e-04   p_joint 1.559140e-05

Joint ci ratio: 7.156849e-01	ci left: 1.038599e-05	ci right 2.227203e-05	k: 29	n:1870000
Cons ci ratio: 1.208247e-01	ci left: 5.285713e-04	ci right 5.970550e-04	k: 1051	n:1870000
KS ci ratio: 1.492043e-01	ci left: 3.414520e-04	ci right 3.970128e-04	k: 689	n:1870000
SLC6A5   1870000 perm   1683 sec   (1111 perm/sec)   p_kst 3.684492e-04   p_cons 5.620321e-04   p_joint 1.550802e-05

Joint ci ratio: 7.156849e-01	ci left: 1.033074e-05	ci right 2.215356e-05	k: 29	n:1880000
Cons ci ratio: 1.206529e-01	ci left: 5.273073e-04	ci right 5.955231e-04	k: 1054	n:1880000
KS ci ratio: 1.487737e-01	ci left: 3.416842e-04	ci right 3.971080e-04	k: 693	n:1880000
SLC6A5   1880000 perm   1699 sec   (1107 perm/sec)   p_kst 3.686170e-04   p_cons 5.606383e-04   p_joint 1.542553e-05

Joint ci ratio: 7.156849e-01	ci left: 1.027608e-05	ci right 2.203635e-05	k: 29	n:1890000
Cons ci ratio: 1.202546e-01	ci left: 5.281094e-04	ci right 5.961874e-04	k: 1061	n:1890000
KS ci ratio: 1.486667e-01	ci left: 3.403857e-04	ci right 3.955556e-04	k: 694	n:1890000
SLC6A5   1890000 perm   1715 sec   (1102 perm/sec)   p_kst 3.671958e-04   p_cons 5.613757e-04   p_joint 1.534392e-05

Joint ci ratio: 7.156850e-01	ci left: 1.022200e-05	ci right 2.192037e-05	k: 29	n:1900000
Cons ci ratio: 1.199163e-01	ci left: 5.283929e-04	ci right 5.963023e-04	k: 1067	n:1900000
KS ci ratio: 1.483469e-01	ci left: 3.401145e-04	ci right 3.951114e-04	k: 697	n:1900000
SLC6A5   1900000 perm   1731 sec   (1098 perm/sec)   p_kst 3.668421e-04   p_cons 5.615789e-04   p_joint 1.526316e-05

Joint ci ratio: 7.156850e-01	ci left: 1.016848e-05	ci right 2.180560e-05	k: 29	n:1910000
Cons ci ratio: 1.196366e-01	ci left: 5.281659e-04	ci right 5.958765e-04	k: 1072	n:1910000
KS ci ratio: 1.476085e-01	ci left: 3.418630e-04	ci right 3.968432e-04	k: 704	n:1910000
SLC6A5   1910000 perm   1747 sec   (1093 perm/sec)   p_kst 3.685864e-04   p_cons 5.612565e-04   p_joint 1.518325e-05

Joint ci ratio: 7.156850e-01	ci left: 1.011552e-05	ci right 2.169203e-05	k: 29	n:1920000
Cons ci ratio: 1.193588e-01	ci left: 5.279413e-04	ci right 5.954549e-04	k: 1077	n:1920000
KS ci ratio: 1.467779e-01	ci left: 3.440957e-04	ci right 3.990963e-04	k: 712	n:1920000
SLC6A5   1920000 perm   1763 sec   (1089 perm/sec)   p_kst 3.708333e-04   p_cons 5.609375e-04   p_joint 1.510417e-05

Joint ci ratio: 7.156851e-01	ci left: 1.006311e-05	ci right 2.157964e-05	k: 29	n:1930000
Cons ci ratio: 1.190280e-01	ci left: 5.282220e-04	ci right 5.955711e-04	k: 1083	n:1930000
KS ci ratio: 1.464701e-01	ci left: 3.438102e-04	ci right 3.986398e-04	k: 715	n:1930000
SLC6A5   1930000 perm   1779 sec   (1085 perm/sec)   p_kst 3.704663e-04   p_cons 5.611399e-04   p_joint 1.502591e-05

Joint ci ratio: 7.156851e-01	ci left: 1.001124e-05	ci right 2.146840e-05	k: 29	n:1940000
Cons ci ratio: 1.187000e-01	ci left: 5.285000e-04	ci right 5.956858e-04	k: 1089	n:1940000
KS ci ratio: 1.458601e-01	ci left: 3.450177e-04	ci right 3.997908e-04	k: 721	n:1940000
SLC6A5   1940000 perm   1795 sec   (1081 perm/sec)   p_kst 3.716495e-04   p_cons 5.613402e-04   p_joint 1.494845e-05

Joint ci ratio: 7.156851e-01	ci left: 9.959896e-06	ci right 2.135831e-05	k: 29	n:1950000
Cons ci ratio: 1.182667e-01	ci left: 5.297708e-04	ci right 5.968551e-04	k: 1097	n:1950000
KS ci ratio: 1.452577e-01	ci left: 3.462133e-04	ci right 4.009294e-04	k: 727	n:1950000
SLC6A5   1950000 perm   1812 sec   (1076 perm/sec)   p_kst 3.728205e-04   p_cons 5.625641e-04   p_joint 1.487179e-05

Joint ci ratio: 7.156851e-01	ci left: 9.909080e-06	ci right 2.124934e-05	k: 29	n:1960000
Cons ci ratio: 9.873500e-02	ci left: 7.638885e-04	ci right 8.437208e-04	k: 1574	n:1960000
KS ci ratio: 1.448603e-01	ci left: 3.464136e-04	ci right 4.009987e-04	k: 731	n:1960000
SLC6A5   1960000 perm   1828 sec   (1072 perm/sec)   p_kst 3.729592e-04   p_cons 8.030612e-04   p_joint 1.479592e-05

Joint ci ratio: 7.543990e-01	ci left: 8.621369e-06	ci right 1.933802e-05	k: 26	n:1970000
Cons ci ratio: 9.839193e-02	ci left: 7.654570e-04	ci right 8.451593e-04	k: 1585	n:1970000
KS ci ratio: 1.444661e-01	ci left: 3.466121e-04	ci right 4.010671e-04	k: 735	n:1970000
SLC6A5   1970000 perm   1845 sec   (1068 perm/sec)   p_kst 3.730964e-04   p_cons 8.045685e-04   p_joint 1.319797e-05

Joint ci ratio: 7.839949e-01	ci left: 7.766304e-06	ci right 1.803535e-05	k: 24	n:1980000
Cons ci ratio: 9.811392e-02	ci left: 7.660249e-04	ci right 8.455479e-04	k: 1594	n:1980000
KS ci ratio: 1.440751e-01	ci left: 3.468089e-04	ci right 4.011346e-04	k: 739	n:1980000
SLC6A5   1980000 perm   1862 sec   (1063 perm/sec)   p_kst 3.732323e-04   p_cons 8.050505e-04   p_joint 1.212121e-05

Joint ci ratio: 7.839949e-01	ci left: 7.727278e-06	ci right 1.794472e-05	k: 24	n:1990000
Cons ci ratio: 9.783825e-02	ci left: 7.665873e-04	ci right 8.459323e-04	k: 1603	n:1990000
KS ci ratio: 1.437840e-01	ci left: 3.465193e-04	ci right 4.006806e-04	k: 742	n:1990000
SLC6A5   1990000 perm   1879 sec   (1059 perm/sec)   p_kst 3.728643e-04   p_cons 8.055276e-04   p_joint 1.206030e-05

Joint ci ratio: 7.839949e-01	ci left: 7.688641e-06	ci right 1.785500e-05	k: 24	n:2000000
Cons ci ratio: 9.753464e-02	ci left: 7.676322e-04	ci right 8.468247e-04	k: 1613	n:2000000
KS ci ratio: 1.433985e-01	ci left: 3.467149e-04	ci right 4.007490e-04	k: 746	n:2000000
SLC6A5   2000000 perm   1896 sec   (1055 perm/sec)   p_kst 3.730000e-04   p_cons 8.065000e-04   p_joint 1.200000e-05

Joint ci ratio: 7.687701e-01	ci left: 8.049111e-06	ci right 1.836061e-05	k: 25	n:2010000
Cons ci ratio: 9.729382e-02	ci left: 7.676963e-04	ci right 8.466887e-04	k: 1621	n:2010000
KS ci ratio: 1.428259e-01	ci left: 3.478682e-04	ci right 4.018471e-04	k: 752	n:2010000
SLC6A5   2010000 perm   1913 sec   (1051 perm/sec)   p_kst 3.741294e-04   p_cons 8.064677e-04   p_joint 1.243781e-05

Joint ci ratio: 7.687701e-01	ci left: 8.009264e-06	ci right 1.826971e-05	k: 25	n:2020000
Cons ci ratio: 9.708457e-02	ci left: 7.672769e-04	ci right 8.460467e-04	k: 1628	n:2020000
KS ci ratio: 1.423541e-01	ci left: 3.485330e-04	ci right 4.024212e-04	k: 757	n:2020000
SLC6A5   2020000 perm   1929 sec   (1047 perm/sec)   p_kst 3.747525e-04   p_cons 8.059406e-04   p_joint 1.237624e-05

Joint ci ratio: 7.543991e-01	ci left: 8.366550e-06	ci right 1.876646e-05	k: 26	n:2030000
Cons ci ratio: 9.696570e-02	ci left: 7.654198e-04	ci right 8.438973e-04	k: 1632	n:2030000
KS ci ratio: 1.419799e-01	ci left: 3.487164e-04	ci right 4.024794e-04	k: 761	n:2030000
SLC6A5   2030000 perm   1946 sec   (1043 perm/sec)   p_kst 3.748768e-04   p_cons 8.039409e-04   p_joint 1.280788e-05

Joint ci ratio: 7.543992e-01	ci left: 8.325538e-06	ci right 1.867447e-05	k: 26	n:2040000
Cons ci ratio: 9.669957e-02	ci left: 7.659727e-04	ci right 8.442791e-04	k: 1641	n:2040000
KS ci ratio: 1.416087e-01	ci left: 3.488983e-04	ci right 4.025367e-04	k: 765	n:2040000
SLC6A5   2040000 perm   1963 sec   (1039 perm/sec)   p_kst 3.750000e-04   p_cons 8.044118e-04   p_joint 1.274510e-05

Joint ci ratio: 7.543992e-01	ci left: 8.284925e-06	ci right 1.858337e-05	k: 26	n:2050000
Cons ci ratio: 9.628981e-02	ci left: 7.689008e-04	ci right 8.471546e-04	k: 1655	n:2050000
KS ci ratio: 1.413323e-01	ci left: 3.486079e-04	ci right 4.020883e-04	k: 768	n:2050000
SLC6A5   2050000 perm   1980 sec   (1035 perm/sec)   p_kst 3.746341e-04   p_cons 8.073171e-04   p_joint 1.268293e-05

Joint ci ratio: 7.543992e-01	ci left: 8.244707e-06	ci right 1.849316e-05	k: 26	n:2060000
Cons ci ratio: 9.623185e-02	ci left: 7.661157e-04	ci right 8.440365e-04	k: 1657	n:2060000
KS ci ratio: 1.412406e-01	ci left: 3.473839e-04	ci right 4.006390e-04	k: 769	n:2060000
SLC6A5   2060000 perm   1997 sec   (1031 perm/sec)   p_kst 3.733010e-04   p_cons 8.043689e-04   p_joint 1.262136e-05

Joint ci ratio: 7.543992e-01	ci left: 8.204877e-06	ci right 1.840382e-05	k: 26	n:2070000
Cons ci ratio: 9.585668e-02	ci left: 7.685441e-04	ci right 8.463900e-04	k: 1670	n:2070000
KS ci ratio: 1.409662e-01	ci left: 3.471039e-04	ci right 4.002040e-04	k: 772	n:2070000
SLC6A5   2070000 perm   2014 sec   (1028 perm/sec)   p_kst 3.729469e-04   p_cons 8.067633e-04   p_joint 1.256039e-05

Joint ci ratio: 7.543993e-01	ci left: 8.165431e-06	ci right 1.831534e-05	k: 26	n:2080000
Cons ci ratio: 9.574225e-02	ci left: 7.667261e-04	ci right 8.442900e-04	k: 1674	n:2080000
KS ci ratio: 1.406935e-01	ci left: 3.468266e-04	ci right 3.997730e-04	k: 775	n:2080000
SLC6A5   2080000 perm   2032 sec   (1024 perm/sec)   p_kst 3.725962e-04   p_cons 8.048077e-04   p_joint 1.250000e-05

Joint ci ratio: 7.279205e-01	ci left: 8.902313e-06	ci right 1.936252e-05	k: 28	n:2090000
Cons ci ratio: 9.548604e-02	ci left: 7.672608e-04	ci right 8.446595e-04	k: 1683	n:2090000
KS ci ratio: 1.402424e-01	ci left: 3.474754e-04	ci right 4.003366e-04	k: 780	n:2090000
SLC6A5   2090000 perm   2049 sec   (1020 perm/sec)   p_kst 3.732057e-04   p_cons 8.052632e-04   p_joint 1.339713e-05

Joint ci ratio: 7.279205e-01	ci left: 8.859921e-06	ci right 1.927032e-05	k: 28	n:2100000
Cons ci ratio: 9.511949e-02	ci left: 7.696502e-04	ci right 8.469752e-04	k: 1696	n:2100000
KS ci ratio: 1.399738e-01	ci left: 3.471992e-04	ci right 3.999088e-04	k: 783	n:2100000
SLC6A5   2100000 perm   2066 sec   (1016 perm/sec)   p_kst 3.728571e-04   p_cons 8.076190e-04   p_joint 1.333333e-05

Joint ci ratio: 7.156856e-01	ci left: 9.204642e-06	ci right 1.973873e-05	k: 29	n:2110000
Cons ci ratio: 9.492394e-02	ci left: 7.692412e-04	ci right 8.463575e-04	k: 1703	n:2110000
KS ci ratio: 1.397068e-01	ci left: 3.469258e-04	ci right 3.994851e-04	k: 786	n:2110000
SLC6A5   2110000 perm   2084 sec   (1013 perm/sec)   p_kst 3.725118e-04   p_cons 8.071090e-04   p_joint 1.374408e-05

Joint ci ratio: 7.156856e-01	ci left: 9.161224e-06	ci right 1.964562e-05	k: 29	n:2120000
Cons ci ratio: 9.470189e-02	ci left: 7.692968e-04	ci right 8.462283e-04	k: 1711	n:2120000
KS ci ratio: 1.396182e-01	ci left: 3.457446e-04	ci right 3.980889e-04	k: 787	n:2120000
SLC6A5   2120000 perm   2101 sec   (1009 perm/sec)   p_kst 3.712264e-04   p_cons 8.070755e-04   p_joint 1.367925e-05

Joint ci ratio: 7.156856e-01	ci left: 9.118213e-06	ci right 1.955339e-05	k: 29	n:2130000
Cons ci ratio: 9.445392e-02	ci left: 7.698105e-04	ci right 8.465806e-04	k: 1720	n:2130000
KS ci ratio: 1.390896e-01	ci left: 3.468401e-04	ci right 3.991349e-04	k: 793	n:2130000
SLC6A5   2130000 perm   2119 sec   (1005 perm/sec)   p_kst 3.723005e-04   p_cons 8.075117e-04   p_joint 1.361502e-05

Joint ci ratio: 7.156856e-01	ci left: 9.075605e-06	ci right 1.946202e-05	k: 29	n:2140000
Cons ci ratio: 9.423516e-02	ci left: 7.698634e-04	ci right 8.464511e-04	k: 1728	n:2140000
KS ci ratio: 1.388276e-01	ci left: 3.465724e-04	ci right 3.987204e-04	k: 796	n:2140000
SLC6A5   2140000 perm   2136 sec   (1002 perm/sec)   p_kst 3.719626e-04   p_cons 8.074766e-04   p_joint 1.355140e-05

Joint ci ratio: 7.156856e-01	ci left: 9.033393e-06	ci right 1.937150e-05	k: 29	n:2150000
Cons ci ratio: 9.404500e-02	ci left: 7.694618e-04	ci right 8.458466e-04	k: 1735	n:2150000
KS ci ratio: 1.380502e-01	ci left: 3.490016e-04	ci right 4.011968e-04	k: 805	n:2150000
SLC6A5   2150000 perm   2154 sec   (998 perm/sec)   p_kst 3.744186e-04   p_cons 8.069767e-04   p_joint 1.348837e-05

Joint ci ratio: 7.156857e-01	ci left: 8.991571e-06	ci right 1.928181e-05	k: 29	n:2160000
Cons ci ratio: 9.388294e-02	ci left: 7.686120e-04	ci right 8.447737e-04	k: 1741	n:2160000
KS ci ratio: 1.377089e-01	ci left: 3.491738e-04	ci right 4.012551e-04	k: 809	n:2160000
SLC6A5   2160000 perm   2172 sec   (994 perm/sec)   p_kst 3.745370e-04   p_cons 8.060185e-04   p_joint 1.342593e-05

Joint ci ratio: 7.156857e-01	ci left: 8.950135e-06	ci right 1.919296e-05	k: 29	n:2170000
Cons ci ratio: 9.358786e-02	ci left: 7.700203e-04	ci right 8.460686e-04	k: 1752	n:2170000
KS ci ratio: 1.375393e-01	ci left: 3.484546e-04	ci right 4.003594e-04	k: 811	n:2170000
SLC6A5   2170000 perm   2190 sec   (991 perm/sec)   p_kst 3.737327e-04   p_cons 8.073733e-04   p_joint 1.336406e-05

Joint ci ratio: 7.156857e-01	ci left: 8.909080e-06	ci right 1.910492e-05	k: 29	n:2180000
Cons ci ratio: 9.342815e-02	ci left: 7.691760e-04	ci right 8.450042e-04	k: 1758	n:2180000
KS ci ratio: 1.374547e-01	ci left: 3.472991e-04	ci right 3.989974e-04	k: 812	n:2180000
SLC6A5   2180000 perm   2208 sec   (987 perm/sec)   p_kst 3.724771e-04   p_cons 8.064220e-04   p_joint 1.330275e-05

Joint ci ratio: 7.156857e-01	ci left: 8.868399e-06	ci right 1.901768e-05	k: 29	n:2190000
Cons ci ratio: 9.324283e-02	ci left: 7.687855e-04	ci right 8.444167e-04	k: 1765	n:2190000
KS ci ratio: 1.371178e-01	ci left: 3.474770e-04	ci right 3.990646e-04	k: 816	n:2190000
SLC6A5   2190000 perm   2227 sec   (983 perm/sec)   p_kst 3.726027e-04   p_cons 8.059361e-04   p_joint 1.324201e-05

Joint ci ratio: 7.156858e-01	ci left: 8.828088e-06	ci right 1.893124e-05	k: 29	n:2200000
Cons ci ratio: 9.303235e-02	ci left: 7.688427e-04	ci right 8.442995e-04	k: 1773	n:2200000
KS ci ratio: 1.371179e-01	ci left: 3.458976e-04	ci right 3.972507e-04	k: 816	n:2200000
SLC6A5   2200000 perm   2245 sec   (980 perm/sec)   p_kst 3.709091e-04   p_cons 8.059091e-04   p_joint 1.318182e-05

Joint ci ratio: 7.156858e-01	ci left: 8.788142e-06	ci right 1.884557e-05	k: 29	n:2210000
Cons ci ratio: 9.290159e-02	ci left: 7.675736e-04	ci right 8.427942e-04	k: 1778	n:2210000
KS ci ratio: 1.367835e-01	ci left: 3.460804e-04	ci right 3.973251e-04	k: 820	n:2210000
SLC6A5   2210000 perm   2264 sec   (976 perm/sec)   p_kst 3.710407e-04   p_cons 8.045249e-04   p_joint 1.312217e-05

Joint ci ratio: 7.156858e-01	ci left: 8.748555e-06	ci right 1.876068e-05	k: 29	n:2220000
Cons ci ratio: 9.256389e-02	ci left: 7.698362e-04	ci right 8.449894e-04	k: 1791	n:2220000
KS ci ratio: 1.363688e-01	ci left: 3.466968e-04	ci right 3.978645e-04	k: 825	n:2220000
SLC6A5   2220000 perm   2282 sec   (973 perm/sec)   p_kst 3.716216e-04   p_cons 8.067568e-04   p_joint 1.306306e-05

Joint ci ratio: 7.156858e-01	ci left: 8.709324e-06	ci right 1.867656e-05	k: 29	n:2230000
Cons ci ratio: 9.251241e-02	ci left: 7.672600e-04	ci right 8.421178e-04	k: 1793	n:2230000
KS ci ratio: 1.361219e-01	ci left: 3.464415e-04	ci right 3.974715e-04	k: 828	n:2230000
SLC6A5   2230000 perm   2300 sec   (970 perm/sec)   p_kst 3.713004e-04   p_cons 8.040359e-04   p_joint 1.300448e-05

Joint ci ratio: 7.156859e-01	ci left: 8.670443e-06	ci right 1.859318e-05	k: 29	n:2240000
Cons ci ratio: 9.225560e-02	ci left: 7.681959e-04	ci right 8.429258e-04	k: 1803	n:2240000
KS ci ratio: 1.359580e-01	ci left: 3.457573e-04	ci right 3.966203e-04	k: 830	n:2240000
SLC6A5   2240000 perm   2318 sec   (966 perm/sec)   p_kst 3.705357e-04   p_cons 8.049107e-04   p_joint 1.294643e-05

Joint ci ratio: 7.156859e-01	ci left: 8.631908e-06	ci right 1.851054e-05	k: 29	n:2250000
Cons ci ratio: 9.210261e-02	ci left: 7.673869e-04	ci right 8.419076e-04	k: 1809	n:2250000
KS ci ratio: 1.357133e-01	ci left: 3.455087e-04	ci right 3.962362e-04	k: 833	n:2250000
SLC6A5   2250000 perm   2337 sec   (963 perm/sec)   p_kst 3.702222e-04   p_cons 8.040000e-04   p_joint 1.288889e-05

Joint ci ratio: 7.156859e-01	ci left: 8.593713e-06	ci right 1.842864e-05	k: 29	n:2260000
Cons ci ratio: 9.184919e-02	ci left: 7.683144e-04	ci right 8.427088e-04	k: 1819	n:2260000
KS ci ratio: 1.357134e-01	ci left: 3.439798e-04	ci right 3.944830e-04	k: 833	n:2260000
SLC6A5   2260000 perm   2356 sec   (959 perm/sec)   p_kst 3.685841e-04   p_cons 8.048673e-04   p_joint 1.283186e-05

Joint ci ratio: 7.156859e-01	ci left: 8.555855e-06	ci right 1.834745e-05	k: 29	n:2270000
Cons ci ratio: 9.164799e-02	ci left: 7.683731e-04	ci right 8.426015e-04	k: 1827	n:2270000
KS ci ratio: 1.353891e-01	ci left: 3.441669e-04	ci right 3.945670e-04	k: 837	n:2270000
SLC6A5   2270000 perm   2374 sec   (956 perm/sec)   p_kst 3.687225e-04   p_cons 8.048458e-04   p_joint 1.277533e-05

Joint ci ratio: 7.156859e-01	ci left: 8.518330e-06	ci right 1.826698e-05	k: 29	n:2280000
Cons ci ratio: 9.159802e-02	ci left: 7.658601e-04	ci right 8.398032e-04	k: 1829	n:2280000
KS ci ratio: 1.351475e-01	ci left: 3.439286e-04	ci right 3.941967e-04	k: 840	n:2280000
SLC6A5   2280000 perm   2393 sec   (953 perm/sec)   p_kst 3.684211e-04   p_cons 8.021930e-04   p_joint 1.271930e-05

Joint ci ratio: 7.156860e-01	ci left: 8.481132e-06	ci right 1.818722e-05	k: 29	n:2290000
Cons ci ratio: 9.137358e-02	ci left: 7.663560e-04	ci right 8.401560e-04	k: 1838	n:2290000
KS ci ratio: 1.346679e-01	ci left: 3.449584e-04	ci right 3.951838e-04	k: 846	n:2290000
SLC6A5   2290000 perm   2412 sec   (949 perm/sec)   p_kst 3.694323e-04   p_cons 8.026201e-04   p_joint 1.266376e-05

Joint ci ratio: 7.156860e-01	ci left: 8.444257e-06	ci right 1.810814e-05	k: 29	n:2300000
Cons ci ratio: 9.122493e-02	ci left: 7.655731e-04	ci right 8.391714e-04	k: 1844	n:2300000
KS ci ratio: 1.345885e-01	ci left: 3.438787e-04	ci right 3.939150e-04	k: 847	n:2300000
SLC6A5   2300000 perm   2431 sec   (946 perm/sec)   p_kst 3.682609e-04   p_cons 8.017391e-04   p_joint 1.260870e-05

Joint ci ratio: 7.156860e-01	ci left: 8.407702e-06	ci right 1.802975e-05	k: 29	n:2310000
Cons ci ratio: 9.078296e-02	ci left: 7.698739e-04	ci right 8.435080e-04	k: 1862	n:2310000
KS ci ratio: 1.345093e-01	ci left: 3.428084e-04	ci right 3.926572e-04	k: 848	n:2310000
SLC6A5   2310000 perm   2450 sec   (943 perm/sec)   p_kst 3.670996e-04   p_cons 8.060606e-04   p_joint 1.255411e-05

Joint ci ratio: 7.156860e-01	ci left: 8.371462e-06	ci right 1.795204e-05	k: 29	n:2320000
Cons ci ratio: 9.063717e-02	ci left: 7.690830e-04	ci right 8.425171e-04	k: 1868	n:2320000
KS ci ratio: 1.342723e-01	ci left: 3.425804e-04	ci right 3.923013e-04	k: 851	n:2320000
SLC6A5   2320000 perm   2469 sec   (940 perm/sec)   p_kst 3.668103e-04   p_cons 8.051724e-04   p_joint 1.250000e-05

Joint ci ratio: 7.040479e-01	ci left: 8.687087e-06	ci right 1.838058e-05	k: 30	n:2330000
Cons ci ratio: 9.044381e-02	ci left: 7.691380e-04	ci right 8.424123e-04	k: 1876	n:2330000
KS ci ratio: 1.337240e-01	ci left: 3.440137e-04	ci right 3.937225e-04	k: 858	n:2330000
SLC6A5   2330000 perm   2488 sec   (936 perm/sec)   p_kst 3.682403e-04   p_cons 8.051502e-04   p_joint 1.287554e-05

Joint ci ratio: 7.040480e-01	ci left: 8.649962e-06	ci right 1.830203e-05	k: 30	n:2340000
Cons ci ratio: 9.017989e-02	ci left: 7.704457e-04	ci right 8.436192e-04	k: 1887	n:2340000
KS ci ratio: 1.334911e-01	ci left: 3.437828e-04	ci right 3.933648e-04	k: 861	n:2340000
SLC6A5   2340000 perm   2507 sec   (933 perm/sec)   p_kst 3.679487e-04   p_cons 8.064103e-04   p_joint 1.282051e-05

Joint ci ratio: 7.040480e-01	ci left: 8.613154e-06	ci right 1.822415e-05	k: 30	n:2350000
Cons ci ratio: 9.006077e-02	ci left: 7.692469e-04	ci right 8.422050e-04	k: 1892	n:2350000
KS ci ratio: 1.331824e-01	ci left: 3.439652e-04	ci right 3.934498e-04	k: 865	n:2350000
SLC6A5   2350000 perm   2527 sec   (930 perm/sec)   p_kst 3.680851e-04   p_cons 8.051064e-04   p_joint 1.276596e-05

Joint ci ratio: 7.040480e-01	ci left: 8.576657e-06	ci right 1.814693e-05	k: 30	n:2360000
Cons ci ratio: 8.975302e-02	ci left: 7.713721e-04	ci right 8.442686e-04	k: 1905	n:2360000
KS ci ratio: 1.330290e-01	ci left: 3.433270e-04	ci right 3.926583e-04	k: 867	n:2360000
SLC6A5   2360000 perm   2546 sec   (927 perm/sec)   p_kst 3.673729e-04   p_cons 8.072034e-04   p_joint 1.271186e-05

Joint ci ratio: 7.040480e-01	ci left: 8.540469e-06	ci right 1.807036e-05	k: 30	n:2370000
Cons ci ratio: 8.949509e-02	ci left: 7.726547e-04	ci right 8.454516e-04	k: 1916	n:2370000
KS ci ratio: 1.326474e-01	ci left: 3.439179e-04	ci right 3.931813e-04	k: 872	n:2370000
SLC6A5   2370000 perm   2566 sec   (924 perm/sec)   p_kst 3.679325e-04   p_cons 8.084388e-04   p_joint 1.265823e-05

Joint ci ratio: 7.040481e-01	ci left: 8.504585e-06	ci right 1.799443e-05	k: 30	n:2380000
Cons ci ratio: 8.937866e-02	ci left: 7.714621e-04	ci right 8.440471e-04	k: 1921	n:2380000
KS ci ratio: 1.323446e-01	ci left: 3.440979e-04	ci right 3.932656e-04	k: 876	n:2380000
SLC6A5   2380000 perm   2586 sec   (920 perm/sec)   p_kst 3.680672e-04   p_cons 8.071429e-04   p_joint 1.260504e-05

Joint ci ratio: 7.040481e-01	ci left: 8.469000e-06	ci right 1.791914e-05	k: 30	n:2390000
Cons ci ratio: 8.914702e-02	ci left: 7.723249e-04	ci right 8.447930e-04	k: 1931	n:2390000
KS ci ratio: 1.321940e-01	ci left: 3.434672e-04	ci right 3.924847e-04	k: 878	n:2390000
SLC6A5   2390000 perm   2605 sec   (917 perm/sec)   p_kst 3.673640e-04   p_cons 8.079498e-04   p_joint 1.255230e-05

Joint ci ratio: 7.040481e-01	ci left: 8.433713e-06	ci right 1.784448e-05	k: 30	n:2400000
Cons ci ratio: 8.907798e-02	ci left: 7.703290e-04	ci right 8.425509e-04	k: 1934	n:2400000
KS ci ratio: 1.317450e-01	ci left: 3.444536e-04	ci right 3.934318e-04	k: 884	n:2400000
SLC6A5   2400000 perm   2625 sec   (914 perm/sec)   p_kst 3.683333e-04   p_cons 8.058333e-04   p_joint 1.250000e-05

Joint ci ratio: 7.040481e-01	ci left: 8.398718e-06	ci right 1.777044e-05	k: 30	n:2410000
Cons ci ratio: 8.889441e-02	ci left: 7.703783e-04	ci right 8.424482e-04	k: 1942	n:2410000
KS ci ratio: 1.314483e-01	ci left: 3.446294e-04	ci right 3.935137e-04	k: 888	n:2410000
SLC6A5   2410000 perm   2645 sec   (911 perm/sec)   p_kst 3.684647e-04   p_cons 8.058091e-04   p_joint 1.244813e-05

Joint ci ratio: 7.040481e-01	ci left: 8.364013e-06	ci right 1.769700e-05	k: 30	n:2420000
Cons ci ratio: 8.880312e-02	ci left: 7.688110e-04	ci right 8.406567e-04	k: 1946	n:2420000
KS ci ratio: 1.312271e-01	ci left: 3.444043e-04	ci right 3.931679e-04	k: 891	n:2420000
SLC6A5   2420000 perm   2664 sec   (908 perm/sec)   p_kst 3.681818e-04   p_cons 8.041322e-04   p_joint 1.239669e-05

Joint ci ratio: 7.040481e-01	ci left: 8.329593e-06	ci right 1.762418e-05	k: 30	n:2430000
Cons ci ratio: 8.868937e-02	ci left: 7.676591e-04	ci right 8.393005e-04	k: 1951	n:2430000
KS ci ratio: 1.310803e-01	ci left: 3.437830e-04	ci right 3.924000e-04	k: 893	n:2430000
SLC6A5   2430000 perm   2684 sec   (905 perm/sec)   p_kst 3.674897e-04   p_cons 8.028807e-04   p_joint 1.234568e-05

Joint ci ratio: 7.040482e-01	ci left: 8.295455e-06	ci right 1.755195e-05	k: 30	n:2440000
Cons ci ratio: 8.857605e-02	ci left: 7.665167e-04	ci right 8.379553e-04	k: 1956	n:2440000
KS ci ratio: 1.309339e-01	ci left: 3.431669e-04	ci right 3.916383e-04	k: 895	n:2440000
SLC6A5   2440000 perm   2704 sec   (902 perm/sec)   p_kst 3.668033e-04   p_cons 8.016393e-04   p_joint 1.229508e-05

Joint ci ratio: 7.040482e-01	ci left: 8.261596e-06	ci right 1.748031e-05	k: 30	n:2450000
Cons ci ratio: 8.839556e-02	ci left: 7.665811e-04	ci right 8.378726e-04	k: 1964	n:2450000
KS ci ratio: 1.309340e-01	ci left: 3.417662e-04	ci right 3.900398e-04	k: 895	n:2450000
SLC6A5   2450000 perm   2724 sec   (899 perm/sec)   p_kst 3.653061e-04   p_cons 8.016327e-04   p_joint 1.224490e-05

Joint ci ratio: 7.040482e-01	ci left: 8.228012e-06	ci right 1.740925e-05	k: 30	n:2460000
Cons ci ratio: 8.814913e-02	ci left: 7.678378e-04	ci right 8.390368e-04	k: 1975	n:2460000
KS ci ratio: 1.307882e-01	ci left: 3.411633e-04	ci right 3.892939e-04	k: 897	n:2460000
SLC6A5   2460000 perm   2744 sec   (897 perm/sec)   p_kst 3.646341e-04   p_cons 8.028455e-04   p_joint 1.219512e-05

Joint ci ratio: 6.929600e-01	ci left: 8.527544e-06	ci right 1.781454e-05	k: 31	n:2470000
Cons ci ratio: 8.799342e-02	ci left: 7.675007e-04	ci right 8.385363e-04	k: 1982	n:2470000
KS ci ratio: 1.305703e-01	ci left: 3.409569e-04	ci right 3.889721e-04	k: 900	n:2470000
SLC6A5   2470000 perm   2764 sec   (894 perm/sec)   p_kst 3.643725e-04   p_cons 8.024291e-04   p_joint 1.255061e-05

Joint ci ratio: 6.929600e-01	ci left: 8.493159e-06	ci right 1.774271e-05	k: 31	n:2480000
Cons ci ratio: 8.777236e-02	ci left: 7.683496e-04	ci right 8.392760e-04	k: 1992	n:2480000
KS ci ratio: 1.304980e-01	ci left: 3.399721e-04	ci right 3.878201e-04	k: 901	n:2480000
SLC6A5   2480000 perm   2784 sec   (891 perm/sec)   p_kst 3.633065e-04   p_cons 8.032258e-04   p_joint 1.250000e-05

Joint ci ratio: 6.823798e-01	ci left: 8.790368e-06	ci right 1.814230e-05	k: 32	n:2490000
Cons ci ratio: 8.761864e-02	ci left: 7.680135e-04	ci right 8.387783e-04	k: 1999	n:2490000
KS ci ratio: 1.303536e-01	ci left: 3.393838e-04	ci right 3.870920e-04	k: 903	n:2490000
SLC6A5   2490000 perm   2804 sec   (888 perm/sec)   p_kst 3.626506e-04   p_cons 8.028112e-04   p_joint 1.285141e-05

Joint ci ratio: 6.823798e-01	ci left: 8.755206e-06	ci right 1.806973e-05	k: 32	n:2500000
Cons ci ratio: 8.742214e-02	ci left: 7.684626e-04	ci right 8.391019e-04	k: 2008	n:2500000
KS ci ratio: 1.300661e-01	ci left: 3.395741e-04	ci right 3.871957e-04	k: 907	n:2500000
SLC6A5   2500000 perm   2825 sec   (885 perm/sec)   p_kst 3.628000e-04   p_cons 8.032000e-04   p_joint 1.280000e-05

Joint ci ratio: 6.823798e-01	ci left: 8.720325e-06	ci right 1.799774e-05	k: 32	n:2510000
Cons ci ratio: 8.727025e-02	ci left: 7.681289e-04	ci right 8.386087e-04	k: 2015	n:2510000
KS ci ratio: 1.298518e-01	ci left: 3.393776e-04	ci right 3.868871e-04	k: 910	n:2510000
SLC6A5   2510000 perm   2846 sec   (882 perm/sec)   p_kst 3.625498e-04   p_cons 8.027888e-04   p_joint 1.274900e-05

Joint ci ratio: 6.823798e-01	ci left: 8.685721e-06	ci right 1.792632e-05	k: 32	n:2520000
Cons ci ratio: 8.711915e-02	ci left: 7.677980e-04	ci right 8.381192e-04	k: 2022	n:2520000
KS ci ratio: 1.292853e-01	ci left: 3.411026e-04	ci right 3.886293e-04	k: 918	n:2520000
SLC6A5   2520000 perm   2867 sec   (879 perm/sec)   p_kst 3.642857e-04   p_cons 8.023810e-04   p_joint 1.269841e-05

Joint ci ratio: 6.823798e-01	ci left: 8.651390e-06	ci right 1.785547e-05	k: 32	n:2530000
Cons ci ratio: 8.686184e-02	ci left: 7.694032e-04	ci right 8.396527e-04	k: 2034	n:2530000
KS ci ratio: 1.292854e-01	ci left: 3.397544e-04	ci right 3.870932e-04	k: 918	n:2530000
SLC6A5   2530000 perm   2887 sec   (876 perm/sec)   p_kst 3.628458e-04   p_cons 8.039526e-04   p_joint 1.264822e-05

Joint ci ratio: 6.823798e-01	ci left: 8.617329e-06	ci right 1.778517e-05	k: 32	n:2540000
Cons ci ratio: 8.667038e-02	ci left: 7.698405e-04	ci right 8.399671e-04	k: 2043	n:2540000
KS ci ratio: 1.290749e-01	ci left: 3.395597e-04	ci right 3.867885e-04	k: 921	n:2540000
SLC6A5   2540000 perm   2908 sec   (873 perm/sec)   p_kst 3.625984e-04   p_cons 8.043307e-04   p_joint 1.259843e-05

Joint ci ratio: 6.823799e-01	ci left: 8.583535e-06	ci right 1.771543e-05	k: 32	n:2550000
Cons ci ratio: 8.652237e-02	ci left: 7.695071e-04	ci right 8.394777e-04	k: 2050	n:2550000
KS ci ratio: 1.290050e-01	ci left: 3.386076e-04	ci right 3.856765e-04	k: 922	n:2550000
SLC6A5   2550000 perm   2929 sec   (871 perm/sec)   p_kst 3.615686e-04   p_cons 8.039216e-04   p_joint 1.254902e-05

Joint ci ratio: 6.823799e-01	ci left: 8.550006e-06	ci right 1.764622e-05	k: 32	n:2560000
Cons ci ratio: 8.639613e-02	ci left: 7.687943e-04	ci right 8.385929e-04	k: 2056	n:2560000
KS ci ratio: 1.288655e-01	ci left: 3.380409e-04	ci right 3.849764e-04	k: 924	n:2560000
SLC6A5   2560000 perm   2950 sec   (868 perm/sec)   p_kst 3.609375e-04   p_cons 8.031250e-04   p_joint 1.250000e-05

Joint ci ratio: 6.823799e-01	ci left: 8.516737e-06	ci right 1.757756e-05	k: 32	n:2570000
Cons ci ratio: 8.614515e-02	ci left: 7.703714e-04	ci right 8.400998e-04	k: 2068	n:2570000
KS ci ratio: 1.285186e-01	ci left: 3.386085e-04	ci right 3.854865e-04	k: 929	n:2570000
SLC6A5   2570000 perm   2971 sec   (865 perm/sec)   p_kst 3.614786e-04   p_cons 8.046693e-04   p_joint 1.245136e-05

Joint ci ratio: 6.823799e-01	ci left: 8.483727e-06	ci right 1.750943e-05	k: 32	n:2580000
Cons ci ratio: 8.591702e-02	ci left: 7.715574e-04	ci right 8.411989e-04	k: 2079	n:2580000
KS ci ratio: 1.283807e-01	ci left: 3.380463e-04	ci right 3.847925e-04	k: 931	n:2580000
SLC6A5   2580000 perm   2992 sec   (862 perm/sec)   p_kst 3.608527e-04   p_cons 8.058140e-04   p_joint 1.240310e-05

Joint ci ratio: 6.722699e-01	ci left: 8.770549e-06	ci right 1.789349e-05	k: 33	n:2590000
Cons ci ratio: 8.575227e-02	ci left: 7.716009e-04	ci right 8.411061e-04	k: 2087	n:2590000
KS ci ratio: 1.281745e-01	ci left: 3.378622e-04	ci right 3.845023e-04	k: 934	n:2590000
SLC6A5   2590000 perm   3013 sec   (859 perm/sec)   p_kst 3.606178e-04   p_cons 8.057915e-04   p_joint 1.274131e-05

Joint ci ratio: 6.722699e-01	ci left: 8.736816e-06	ci right 1.782467e-05	k: 33	n:2600000
Cons ci ratio: 8.554762e-02	ci left: 7.723970e-04	ci right 8.417995e-04	k: 2097	n:2600000
KS ci ratio: 1.279012e-01	ci left: 3.380520e-04	ci right 3.846111e-04	k: 938	n:2600000
SLC6A5   2600000 perm   3034 sec   (857 perm/sec)   p_kst 3.607692e-04   p_cons 8.065385e-04   p_joint 1.269231e-05

Joint ci ratio: 6.722699e-01	ci left: 8.703342e-06	ci right 1.775638e-05	k: 33	n:2610000
Cons ci ratio: 8.528373e-02	ci left: 7.743121e-04	ci right 8.436614e-04	k: 2110	n:2610000
KS ci ratio: 1.277653e-01	ci left: 3.374985e-04	ci right 3.839283e-04	k: 940	n:2610000
SLC6A5   2610000 perm   3056 sec   (854 perm/sec)   p_kst 3.601533e-04   p_cons 8.084291e-04   p_joint 1.264368e-05

Joint ci ratio: 7.544003e-01	ci left: 6.482477e-06	ci right 1.454043e-05	k: 26	n:2620000
Cons ci ratio: 8.516282e-02	ci left: 7.735980e-04	ci right 8.427802e-04	k: 2116	n:2620000
KS ci ratio: 1.271585e-01	ci left: 3.395360e-04	ci right 3.860075e-04	k: 949	n:2620000
SLC6A5   2620000 perm   3077 sec   (851 perm/sec)   p_kst 3.622137e-04   p_cons 8.076336e-04   p_joint 9.923664e-06

Joint ci ratio: 7.544003e-01	ci left: 6.457829e-06	ci right 1.448515e-05	k: 26	n:2630000
Cons ci ratio: 8.504242e-02	ci left: 7.728893e-04	ci right 8.419057e-04	k: 2122	n:2630000
KS ci ratio: 1.269582e-01	ci left: 3.393494e-04	ci right 3.857167e-04	k: 952	n:2630000
SLC6A5   2630000 perm   3099 sec   (849 perm/sec)   p_kst 3.619772e-04   p_cons 8.068441e-04   p_joint 9.885932e-06

Joint ci ratio: 7.544004e-01	ci left: 6.433367e-06	ci right 1.443028e-05	k: 26	n:2640000
Cons ci ratio: 8.476330e-02	ci left: 7.751522e-04	ci right 8.441322e-04	k: 2136	n:2640000
KS ci ratio: 1.265604e-01	ci left: 3.402646e-04	ci right 3.866004e-04	k: 958	n:2640000
SLC6A5   2640000 perm   3120 sec   (846 perm/sec)   p_kst 3.628788e-04   p_cons 8.090909e-04   p_joint 9.848485e-06

Joint ci ratio: 7.544004e-01	ci left: 6.409090e-06	ci right 1.437583e-05	k: 26	n:2650000
Cons ci ratio: 8.460509e-02	ci left: 7.751820e-04	ci right 8.440296e-04	k: 2144	n:2650000
KS ci ratio: 1.262317e-01	ci left: 3.408078e-04	ci right 3.870879e-04	k: 963	n:2650000
SLC6A5   2650000 perm   3142 sec   (843 perm/sec)   p_kst 3.633962e-04   p_cons 8.090566e-04   p_joint 9.811321e-06

Joint ci ratio: 7.544004e-01	ci left: 6.384996e-06	ci right 1.432178e-05	k: 26	n:2660000
Cons ci ratio: 8.446740e-02	ci left: 7.748437e-04	ci right 8.435437e-04	k: 2151	n:2660000
KS ci ratio: 1.260358e-01	ci left: 3.406188e-04	ci right 3.867961e-04	k: 966	n:2660000
SLC6A5   2660000 perm   3164 sec   (841 perm/sec)   p_kst 3.631579e-04   p_cons 8.086466e-04   p_joint 9.774436e-06

Joint ci ratio: 7.544004e-01	ci left: 6.361082e-06	ci right 1.426814e-05	k: 26	n:2670000
Cons ci ratio: 8.436949e-02	ci left: 7.737748e-04	ci right 8.422966e-04	k: 2156	n:2670000
KS ci ratio: 1.258407e-01	ci left: 3.404312e-04	ci right 3.865064e-04	k: 969	n:2670000
SLC6A5   2670000 perm   3185 sec   (838 perm/sec)   p_kst 3.629213e-04   p_cons 8.074906e-04   p_joint 9.737828e-06

Joint ci ratio: 7.544004e-01	ci left: 6.337346e-06	ci right 1.421490e-05	k: 26	n:2680000
Cons ci ratio: 8.427192e-02	ci left: 7.727139e-04	ci right 8.410587e-04	k: 2161	n:2680000
KS ci ratio: 1.254533e-01	ci left: 3.413294e-04	ci right 3.873733e-04	k: 975	n:2680000
SLC6A5   2680000 perm   3207 sec   (836 perm/sec)   p_kst 3.638060e-04   p_cons 8.063433e-04   p_joint 9.701493e-06

Joint ci ratio: 7.544004e-01	ci left: 6.313788e-06	ci right 1.416206e-05	k: 26	n:2690000
Cons ci ratio: 8.417469e-02	ci left: 7.716609e-04	ci right 8.398300e-04	k: 2166	n:2690000
KS ci ratio: 1.251331e-01	ci left: 3.418610e-04	ci right 3.878503e-04	k: 980	n:2690000
SLC6A5   2690000 perm   3229 sec   (833 perm/sec)   p_kst 3.643123e-04   p_cons 8.052045e-04   p_joint 9.665428e-06

Joint ci ratio: 7.544004e-01	ci left: 6.290403e-06	ci right 1.410961e-05	k: 26	n:2700000
Cons ci ratio: 8.398111e-02	ci left: 7.724288e-04	ci right 8.405010e-04	k: 2176	n:2700000
KS ci ratio: 1.248788e-01	ci left: 3.420300e-04	ci right 3.879416e-04	k: 984	n:2700000
SLC6A5   2700000 perm   3251 sec   (831 perm/sec)   p_kst 3.644444e-04   p_cons 8.059259e-04   p_joint 9.629630e-06

Joint ci ratio: 7.544005e-01	ci left: 6.267191e-06	ci right 1.405754e-05	k: 26	n:2710000
Cons ci ratio: 8.378886e-02	ci left: 7.731911e-04	ci right 8.411670e-04	k: 2186	n:2710000
KS ci ratio: 1.247522e-01	ci left: 3.414829e-04	ci right 3.872711e-04	k: 986	n:2710000
SLC6A5   2710000 perm   3273 sec   (828 perm/sec)   p_kst 3.638376e-04   p_cons 8.066421e-04   p_joint 9.594096e-06

Joint ci ratio: 7.544005e-01	ci left: 6.244150e-06	ci right 1.400586e-05	k: 26	n:2720000
Cons ci ratio: 8.363603e-02	ci left: 7.732281e-04	ci right 8.410772e-04	k: 2194	n:2720000
KS ci ratio: 1.245002e-01	ci left: 3.416522e-04	ci right 3.873637e-04	k: 990	n:2720000
SLC6A5   2720000 perm   3295 sec   (825 perm/sec)   p_kst 3.639706e-04   p_cons 8.066176e-04   p_joint 9.558824e-06

Joint ci ratio: 7.544005e-01	ci left: 6.221278e-06	ci right 1.395456e-05	k: 26	n:2730000
Cons ci ratio: 8.348404e-02	ci left: 7.732650e-04	ci right 8.409879e-04	k: 2202	n:2730000
KS ci ratio: 1.242497e-01	ci left: 3.418203e-04	ci right 3.874555e-04	k: 994	n:2730000
SLC6A5   2730000 perm   3318 sec   (823 perm/sec)   p_kst 3.641026e-04   p_cons 8.065934e-04   p_joint 9.523810e-06

Joint ci ratio: 7.544005e-01	ci left: 6.198572e-06	ci right 1.390363e-05	k: 26	n:2740000
Cons ci ratio: 8.335173e-02	ci left: 7.729443e-04	ci right 8.405267e-04	k: 2209	n:2740000
KS ci ratio: 1.241250e-01	ci left: 3.412800e-04	ci right 3.867941e-04	k: 996	n:2740000
SLC6A5   2740000 perm   3340 sec   (820 perm/sec)   p_kst 3.635036e-04   p_cons 8.062044e-04   p_joint 9.489051e-06

Joint ci ratio: 7.544005e-01	ci left: 6.176032e-06	ci right 1.385307e-05	k: 26	n:2750000
Cons ci ratio: 8.312630e-02	ci left: 7.744064e-04	ci right 8.419246e-04	k: 2221	n:2750000
KS ci ratio: 1.239387e-01	ci left: 3.410961e-04	ci right 3.865123e-04	k: 999	n:2750000
SLC6A5   2750000 perm   3363 sec   (818 perm/sec)   p_kst 3.632727e-04   p_cons 8.076364e-04   p_joint 9.454545e-06

Joint ci ratio: 7.544005e-01	ci left: 6.153655e-06	ci right 1.380288e-05	k: 26	n:2760000
Cons ci ratio: 8.301432e-02	ci left: 7.737293e-04	ci right 8.410932e-04	k: 2227	n:2760000
KS ci ratio: 1.236916e-01	ci left: 3.412646e-04	ci right 3.866060e-04	k: 1003	n:2760000
SLC6A5   2760000 perm   3385 sec   (815 perm/sec)   p_kst 3.634058e-04   p_cons 8.068841e-04   p_joint 9.420290e-06

Joint ci ratio: 7.408065e-01	ci left: 6.423537e-06	ci right 1.418177e-05	k: 27	n:2770000
Cons ci ratio: 8.293997e-02	ci left: 7.723501e-04	ci right 8.395308e-04	k: 2231	n:2770000
KS ci ratio: 1.233847e-01	ci left: 3.417819e-04	ci right 3.870711e-04	k: 1008	n:2770000
SLC6A5   2770000 perm   3408 sec   (813 perm/sec)   p_kst 3.638989e-04   p_cons 8.054152e-04   p_joint 9.747292e-06

Joint ci ratio: 7.408065e-01	ci left: 6.400430e-06	ci right 1.413075e-05	k: 27	n:2780000
Cons ci ratio: 8.273630e-02	ci left: 7.734468e-04	ci right 8.405497e-04	k: 2242	n:2780000
KS ci ratio: 1.232017e-01	ci left: 3.415983e-04	ci right 3.867912e-04	k: 1011	n:2780000
SLC6A5   2780000 perm   3431 sec   (810 perm/sec)   p_kst 3.636691e-04   p_cons 8.064748e-04   p_joint 9.712230e-06

Joint ci ratio: 7.408065e-01	ci left: 6.377490e-06	ci right 1.408011e-05	k: 27	n:2790000
Cons ci ratio: 8.260751e-02	ci left: 7.731317e-04	ci right 8.400978e-04	k: 2249	n:2790000
KS ci ratio: 1.228984e-01	ci left: 3.421109e-04	ci right 3.872521e-04	k: 1016	n:2790000
SLC6A5   2790000 perm   3454 sec   (808 perm/sec)   p_kst 3.641577e-04   p_cons 8.060932e-04   p_joint 9.677419e-06

Joint ci ratio: 7.408065e-01	ci left: 6.354713e-06	ci right 1.402982e-05	k: 27	n:2800000
Cons ci ratio: 8.236982e-02	ci left: 7.749176e-04	ci right 8.418360e-04	k: 2262	n:2800000
KS ci ratio: 1.227778e-01	ci left: 3.415814e-04	ci right 3.866053e-04	k: 1018	n:2800000
SLC6A5   2800000 perm   3477 sec   (805 perm/sec)   p_kst 3.635714e-04   p_cons 8.078571e-04   p_joint 9.642857e-06

Joint ci ratio: 7.408065e-01	ci left: 6.332098e-06	ci right 1.397989e-05	k: 27	n:2810000
Cons ci ratio: 8.222462e-02	ci left: 7.749483e-04	ci right 8.417457e-04	k: 2270	n:2810000
KS ci ratio: 1.226575e-01	ci left: 3.410557e-04	ci right 3.859630e-04	k: 1020	n:2810000
SLC6A5   2810000 perm   3499 sec   (803 perm/sec)   p_kst 3.629893e-04   p_cons 8.078292e-04   p_joint 9.608541e-06

Joint ci ratio: 7.408066e-01	ci left: 6.309644e-06	ci right 1.393032e-05	k: 27	n:2820000
Cons ci ratio: 8.202616e-02	ci left: 7.760208e-04	ci right 8.427416e-04	k: 2281	n:2820000
KS ci ratio: 1.225376e-01	ci left: 3.405338e-04	ci right 3.853253e-04	k: 1022	n:2820000
SLC6A5   2820000 perm   3522 sec   (801 perm/sec)   p_kst 3.624113e-04   p_cons 8.088652e-04   p_joint 9.574468e-06

Joint ci ratio: 7.408066e-01	ci left: 6.287348e-06	ci right 1.388109e-05	k: 27	n:2830000
Cons ci ratio: 8.186487e-02	ci left: 7.763938e-04	ci right 8.430091e-04	k: 2290	n:2830000
KS ci ratio: 1.224180e-01	ci left: 3.400155e-04	ci right 3.846921e-04	k: 1024	n:2830000
SLC6A5   2830000 perm   3544 sec   (798 perm/sec)   p_kst 3.618375e-04   p_cons 8.091873e-04   p_joint 9.540636e-06

Joint ci ratio: 7.408066e-01	ci left: 6.265210e-06	ci right 1.383222e-05	k: 27	n:2840000
Cons ci ratio: 8.165125e-02	ci left: 7.777990e-04	ci right 8.443524e-04	k: 2302	n:2840000
KS ci ratio: 1.222393e-01	ci left: 3.398423e-04	ci right 3.844262e-04	k: 1027	n:2840000
SLC6A5   2840000 perm   3567 sec   (796 perm/sec)   p_kst 3.616197e-04   p_cons 8.105634e-04   p_joint 9.507042e-06

Joint ci ratio: 7.408066e-01	ci left: 6.243227e-06	ci right 1.378368e-05	k: 27	n:2850000
Cons ci ratio: 8.142170e-02	ci left: 7.795383e-04	ci right 8.460441e-04	k: 2315	n:2850000
KS ci ratio: 1.219431e-01	ci left: 3.403507e-04	ci right 3.848853e-04	k: 1032	n:2850000
SLC6A5   2850000 perm   3590 sec   (794 perm/sec)   p_kst 3.621053e-04   p_cons 8.122807e-04   p_joint 9.473684e-06

Joint ci ratio: 7.408066e-01	ci left: 6.221397e-06	ci right 1.373549e-05	k: 27	n:2860000
Cons ci ratio: 8.129895e-02	ci left: 7.792104e-04	ci right 8.455833e-04	k: 2322	n:2860000
KS ci ratio: 1.215904e-01	ci left: 3.411947e-04	ci right 3.857013e-04	k: 1038	n:2860000
SLC6A5   2860000 perm   3613 sec   (792 perm/sec)   p_kst 3.629371e-04   p_cons 8.118881e-04   p_joint 9.440559e-06

Joint ci ratio: 7.408066e-01	ci left: 6.199720e-06	ci right 1.368763e-05	k: 27	n:2870000
Cons ci ratio: 8.121164e-02	ci left: 7.782021e-04	ci right 8.444146e-04	k: 2327	n:2870000
KS ci ratio: 1.212408e-01	ci left: 3.420329e-04	ci right 3.865114e-04	k: 1044	n:2870000
SLC6A5   2870000 perm   3636 sec   (789 perm/sec)   p_kst 3.637631e-04   p_cons 8.108014e-04   p_joint 9.407666e-06

Joint ci ratio: 7.408066e-01	ci left: 6.178193e-06	ci right 1.364010e-05	k: 27	n:2880000
Cons ci ratio: 8.112461e-02	ci left: 7.772009e-04	ci right 8.432539e-04	k: 2332	n:2880000
KS ci ratio: 1.211250e-01	ci left: 3.415187e-04	ci right 3.858849e-04	k: 1046	n:2880000
SLC6A5   2880000 perm   3660 sec   (787 perm/sec)   p_kst 3.631944e-04   p_cons 8.097222e-04   p_joint 9.375000e-06

Joint ci ratio: 7.408067e-01	ci left: 6.156815e-06	ci right 1.359291e-05	k: 27	n:2890000
Cons ci ratio: 8.095128e-02	ci left: 7.779017e-04	ci right 8.438664e-04	k: 2342	n:2890000
KS ci ratio: 1.207793e-01	ci left: 3.423503e-04	ci right 3.866885e-04	k: 1052	n:2890000
SLC6A5   2890000 perm   3683 sec   (785 perm/sec)   p_kst 3.640138e-04   p_cons 8.103806e-04   p_joint 9.342561e-06

Joint ci ratio: 7.408067e-01	ci left: 6.135585e-06	ci right 1.354603e-05	k: 27	n:2900000
Cons ci ratio: 8.077906e-02	ci left: 7.785978e-04	ci right 8.444745e-04	k: 2352	n:2900000
KS ci ratio: 1.206077e-01	ci left: 3.421730e-04	ci right 3.864208e-04	k: 1055	n:2900000
SLC6A5   2900000 perm   3706 sec   (782 perm/sec)   p_kst 3.637931e-04   p_cons 8.110345e-04   p_joint 9.310345e-06

Joint ci ratio: 7.408067e-01	ci left: 6.114500e-06	ci right 1.349948e-05	k: 27	n:2910000
Cons ci ratio: 8.050570e-02	ci left: 7.813097e-04	ci right 8.471816e-04	k: 2368	n:2910000
KS ci ratio: 1.204367e-01	ci left: 3.419970e-04	ci right 3.861549e-04	k: 1058	n:2910000
SLC6A5   2910000 perm   3730 sec   (780 perm/sec)   p_kst 3.635739e-04   p_cons 8.137457e-04   p_joint 9.278351e-06

Joint ci ratio: 7.408067e-01	ci left: 6.093560e-06	ci right 1.345325e-05	k: 27	n:2920000
Cons ci ratio: 8.037011e-02	ci left: 7.813186e-04	ci right 8.470751e-04	k: 2376	n:2920000
KS ci ratio: 1.200406e-01	ci left: 3.431510e-04	ci right 3.873018e-04	k: 1065	n:2920000
SLC6A5   2920000 perm   3753 sec   (778 perm/sec)   p_kst 3.647260e-04   p_cons 8.136986e-04   p_joint 9.246575e-06

Joint ci ratio: 7.408067e-01	ci left: 6.072763e-06	ci right 1.340734e-05	k: 27	n:2930000
Cons ci ratio: 8.023521e-02	ci left: 7.813275e-04	ci right 8.469693e-04	k: 2384	n:2930000
KS ci ratio: 1.196483e-01	ci left: 3.442973e-04	ci right 3.884406e-04	k: 1072	n:2930000
SLC6A5   2930000 perm   3777 sec   (776 perm/sec)   p_kst 3.658703e-04   p_cons 8.136519e-04   p_joint 9.215017e-06

Joint ci ratio: 7.408067e-01	ci left: 6.052107e-06	ci right 1.336173e-05	k: 27	n:2940000
Cons ci ratio: 8.006750e-02	ci left: 7.820031e-04	ci right 8.475579e-04	k: 2394	n:2940000
KS ci ratio: 1.194259e-01	ci left: 3.444461e-04	ci right 3.885206e-04	k: 1076	n:2940000
SLC6A5   2940000 perm   3801 sec   (773 perm/sec)   p_kst 3.659864e-04   p_cons 8.142857e-04   p_joint 9.183673e-06

Joint ci ratio: 7.408067e-01	ci left: 6.031591e-06	ci right 1.331644e-05	k: 27	n:2950000
Cons ci ratio: 7.998410e-02	ci left: 7.810133e-04	ci right 8.464137e-04	k: 2399	n:2950000
KS ci ratio: 1.193152e-01	ci left: 3.439362e-04	ci right 3.879017e-04	k: 1078	n:2950000
SLC6A5   2950000 perm   3825 sec   (771 perm/sec)   p_kst 3.654237e-04   p_cons 8.132203e-04   p_joint 9.152542e-06

Joint ci ratio: 7.408067e-01	ci left: 6.011214e-06	ci right 1.327145e-05	k: 27	n:2960000
Cons ci ratio: 7.983453e-02	ci left: 7.813545e-04	ci right 8.466555e-04	k: 2408	n:2960000
KS ci ratio: 1.192048e-01	ci left: 3.434297e-04	ci right 3.872871e-04	k: 1080	n:2960000
SLC6A5   2960000 perm   3849 sec   (769 perm/sec)   p_kst 3.648649e-04   p_cons 8.135135e-04   p_joint 9.121622e-06

Joint ci ratio: 7.408068e-01	ci left: 5.990975e-06	ci right 1.322677e-05	k: 27	n:2970000
Cons ci ratio: 7.971881e-02	ci left: 7.810336e-04	ci right 8.462087e-04	k: 2415	n:2970000
KS ci ratio: 1.190398e-01	ci left: 3.432534e-04	ci right 3.870233e-04	k: 1083	n:2970000
SLC6A5   2970000 perm   3873 sec   (767 perm/sec)   p_kst 3.646465e-04   p_cons 8.131313e-04   p_joint 9.090909e-06

Joint ci ratio: 7.408068e-01	ci left: 5.970871e-06	ci right 1.318238e-05	k: 27	n:2980000
Cons ci ratio: 7.963649e-02	ci left: 7.800570e-04	ci right 8.450804e-04	k: 2420	n:2980000
KS ci ratio: 1.188207e-01	ci left: 3.434039e-04	ci right 3.871067e-04	k: 1087	n:2980000
SLC6A5   2980000 perm   3896 sec   (765 perm/sec)   p_kst 3.647651e-04   p_cons 8.120805e-04   p_joint 9.060403e-06

Joint ci ratio: 7.408068e-01	ci left: 5.950901e-06	ci right 1.313829e-05	k: 27	n:2990000
Cons ci ratio: 7.958726e-02	ci left: 7.784315e-04	ci right 8.432773e-04	k: 2423	n:2990000
KS ci ratio: 1.187117e-01	ci left: 3.429044e-04	ci right 3.865008e-04	k: 1089	n:2990000
SLC6A5   2990000 perm   3920 sec   (763 perm/sec)   p_kst 3.642140e-04   p_cons 8.103679e-04   p_joint 9.030100e-06

Joint ci ratio: 7.408068e-01	ci left: 5.931065e-06	ci right 1.309450e-05	k: 27	n:3000000
Cons ci ratio: 7.939094e-02	ci left: 7.797572e-04	ci right 8.445459e-04	k: 2435	n:3000000
KS ci ratio: 1.185487e-01	ci left: 3.427317e-04	ci right 3.862422e-04	k: 1092	n:3000000
SLC6A5   3000000 perm   3945 sec   (760 perm/sec)   p_kst 3.640000e-04   p_cons 8.116667e-04   p_joint 9.000000e-06

Joint ci ratio: 7.408068e-01	ci left: 5.911360e-06	ci right 1.305100e-05	k: 27	n:3010000
Cons ci ratio: 7.924468e-02	ci left: 7.800974e-04	ci right 8.447894e-04	k: 2444	n:3010000
KS ci ratio: 1.184404e-01	ci left: 3.422378e-04	ci right 3.856431e-04	k: 1094	n:3010000
SLC6A5   3010000 perm   3970 sec   (758 perm/sec)   p_kst 3.634551e-04   p_cons 8.119601e-04   p_joint 8.970100e-06

Joint ci ratio: 7.408068e-01	ci left: 5.891786e-06	ci right 1.300778e-05	k: 27	n:3020000
Cons ci ratio: 7.913150e-02	ci left: 7.797863e-04	ci right 8.443559e-04	k: 2451	n:3020000
KS ci ratio: 1.182247e-01	ci left: 3.423899e-04	ci right 3.857298e-04	k: 1098	n:3020000
SLC6A5   3020000 perm   3994 sec   (756 perm/sec)   p_kst 3.635762e-04   p_cons 8.115894e-04   p_joint 8.940397e-06

Joint ci ratio: 7.408068e-01	ci left: 5.872341e-06	ci right 1.296485e-05	k: 27	n:3030000
Cons ci ratio: 7.901880e-02	ci left: 7.794773e-04	ci right 8.439251e-04	k: 2458	n:3030000
KS ci ratio: 1.179032e-01	ci left: 3.431816e-04	ci right 3.864954e-04	k: 1104	n:3030000
SLC6A5   3030000 perm   4019 sec   (754 perm/sec)   p_kst 3.643564e-04   p_cons 8.112211e-04   p_joint 8.910891e-06

Joint ci ratio: 7.408068e-01	ci left: 5.853024e-06	ci right 1.292220e-05	k: 27	n:3040000
Cons ci ratio: 7.882665e-02	ci left: 7.807827e-04	ci right 8.451743e-04	k: 2470	n:3040000
KS ci ratio: 1.176373e-01	ci left: 3.436490e-04	ci right 3.869172e-04	k: 1109	n:3040000
SLC6A5   3040000 perm   4043 sec   (752 perm/sec)   p_kst 3.648026e-04   p_cons 8.125000e-04   p_joint 8.881579e-06

Joint ci ratio: 7.408068e-01	ci left: 5.833834e-06	ci right 1.287984e-05	k: 27	n:3050000
Cons ci ratio: 7.863589e-02	ci left: 7.820797e-04	ci right 8.464151e-04	k: 2482	n:3050000
KS ci ratio: 1.175315e-01	ci left: 3.431588e-04	ci right 3.863237e-04	k: 1111	n:3050000
SLC6A5   3050000 perm   4067 sec   (750 perm/sec)   p_kst 3.642623e-04   p_cons 8.137705e-04   p_joint 8.852459e-06

Joint ci ratio: 7.408069e-01	ci left: 5.814769e-06	ci right 1.283775e-05	k: 27	n:3060000
Cons ci ratio: 7.852529e-02	ci left: 7.817666e-04	ci right 8.459815e-04	k: 2489	n:3060000
KS ci ratio: 1.174260e-01	ci left: 3.426717e-04	ci right 3.857340e-04	k: 1113	n:3060000
SLC6A5   3060000 perm   4092 sec   (748 perm/sec)   p_kst 3.637255e-04   p_cons 8.133987e-04   p_joint 8.823529e-06

Joint ci ratio: 7.408069e-01	ci left: 5.795829e-06	ci right 1.279593e-05	k: 27	n:3070000
Cons ci ratio: 7.839945e-02	ci left: 7.817748e-04	ci right 8.458829e-04	k: 2497	n:3070000
KS ci ratio: 1.172682e-01	ci left: 3.425040e-04	ci right 3.854834e-04	k: 1116	n:3070000
SLC6A5   3070000 perm   4116 sec   (746 perm/sec)   p_kst 3.635179e-04   p_cons 8.133550e-04   p_joint 8.794788e-06

Joint ci ratio: 7.408069e-01	ci left: 5.777011e-06	ci right 1.275438e-05	k: 27	n:3080000
Cons ci ratio: 7.822737e-02	ci left: 7.827381e-04	ci right 8.467778e-04	k: 2508	n:3080000
KS ci ratio: 1.170588e-01	ci left: 3.426527e-04	ci right 3.855686e-04	k: 1120	n:3080000
SLC6A5   3080000 perm   4141 sec   (744 perm/sec)   p_kst 3.636364e-04   p_cons 8.142857e-04   p_joint 8.766234e-06

Joint ci ratio: 7.408069e-01	ci left: 5.758315e-06	ci right 1.271311e-05	k: 27	n:3090000
Cons ci ratio: 7.811848e-02	ci left: 7.824261e-04	ci right 8.463471e-04	k: 2515	n:3090000
KS ci ratio: 1.169025e-01	ci left: 3.424862e-04	ci right 3.853200e-04	k: 1123	n:3090000
SLC6A5   3090000 perm   4165 sec   (742 perm/sec)   p_kst 3.634304e-04   p_cons 8.139159e-04   p_joint 8.737864e-06

Joint ci ratio: 7.687719e-01	ci left: 5.218936e-06	ci right 1.190479e-05	k: 25	n:3100000
Cons ci ratio: 7.799458e-02	ci left: 7.824324e-04	ci right 8.462480e-04	k: 2523	n:3100000
KS ci ratio: 1.168506e-01	ci left: 3.416946e-04	ci right 3.844091e-04	k: 1124	n:3100000
SLC6A5   3100000 perm   4190 sec   (740 perm/sec)   p_kst 3.625806e-04   p_cons 8.138710e-04   p_joint 8.064516e-06

Joint ci ratio: 7.408069e-01	ci left: 5.721284e-06	ci right 1.263135e-05	k: 27	n:3110000
Cons ci ratio: 7.787127e-02	ci left: 7.824387e-04	ci right 8.461494e-04	k: 2531	n:3110000
KS ci ratio: 1.166951e-01	ci left: 3.415323e-04	ci right 3.841658e-04	k: 1127	n:3110000
SLC6A5   3110000 perm   4215 sec   (738 perm/sec)   p_kst 3.623794e-04   p_cons 8.138264e-04   p_joint 8.681672e-06

Joint ci ratio: 7.408069e-01	ci left: 5.702947e-06	ci right 1.259087e-05	k: 27	n:3120000
Cons ci ratio: 7.782525e-02	ci left: 7.808737e-04	ci right 8.444176e-04	k: 2534	n:3120000
KS ci ratio: 1.165918e-01	ci left: 3.410600e-04	ci right 3.835943e-04	k: 1129	n:3120000
SLC6A5   3120000 perm   4239 sec   (736 perm/sec)   p_kst 3.618590e-04   p_cons 8.121795e-04   p_joint 8.653846e-06

Joint ci ratio: 7.408069e-01	ci left: 5.684726e-06	ci right 1.255064e-05	k: 27	n:3130000
Cons ci ratio: 7.770274e-02	ci left: 7.808851e-04	ci right 8.443254e-04	k: 2542	n:3130000
KS ci ratio: 1.162835e-01	ci left: 3.418314e-04	ci right 3.843414e-04	k: 1135	n:3130000
SLC6A5   3130000 perm   4264 sec   (734 perm/sec)   p_kst 3.626198e-04   p_cons 8.121406e-04   p_joint 8.626198e-06

Joint ci ratio: 7.408069e-01	ci left: 5.666622e-06	ci right 1.251067e-05	k: 27	n:3140000
Cons ci ratio: 7.762650e-02	ci left: 7.799596e-04	ci right 8.432598e-04	k: 2547	n:3140000
KS ci ratio: 1.160793e-01	ci left: 3.419797e-04	ci right 3.844283e-04	k: 1139	n:3140000
SLC6A5   3140000 perm   4290 sec   (732 perm/sec)   p_kst 3.627389e-04   p_cons 8.111465e-04   p_joint 8.598726e-06

Joint ci ratio: 7.279223e-01	ci left: 5.906610e-06	ci right 1.284689e-05	k: 28	n:3150000
Cons ci ratio: 7.747460e-02	ci left: 7.805966e-04	ci right 8.438189e-04	k: 2557	n:3150000
KS ci ratio: 1.159269e-01	ci left: 3.418188e-04	ci right 3.841879e-04	k: 1142	n:3150000
SLC6A5   3150000 perm   4315 sec   (730 perm/sec)   p_kst 3.625397e-04   p_cons 8.117460e-04   p_joint 8.888889e-06

Joint ci ratio: 7.156873e-01	ci left: 6.146133e-06	ci right 1.317999e-05	k: 29	n:3160000
Cons ci ratio: 7.732358e-02	ci left: 7.812297e-04	ci right 8.443744e-04	k: 2567	n:3160000
KS ci ratio: 1.157750e-01	ci left: 3.416589e-04	ci right 3.839490e-04	k: 1145	n:3160000
SLC6A5   3160000 perm   4340 sec   (728 perm/sec)   p_kst 3.623418e-04   p_cons 8.123418e-04   p_joint 9.177215e-06

Joint ci ratio: 7.040492e-01	ci left: 6.385143e-06	ci right 1.351002e-05	k: 30	n:3170000
Cons ci ratio: 7.714350e-02	ci left: 7.824777e-04	ci right 8.455693e-04	k: 2579	n:3170000
KS ci ratio: 1.156238e-01	ci left: 3.415001e-04	ci right 3.837115e-04	k: 1148	n:3170000
SLC6A5   3170000 perm   4366 sec   (726 perm/sec)   p_kst 3.621451e-04   p_cons 8.135647e-04   p_joint 9.463722e-06

Joint ci ratio: 7.040492e-01	ci left: 6.365063e-06	ci right 1.346754e-05	k: 30	n:3180000
Cons ci ratio: 7.699441e-02	ci left: 7.831011e-04	ci right 8.461155e-04	k: 2589	n:3180000
KS ci ratio: 1.154231e-01	ci left: 3.416477e-04	ci right 3.837991e-04	k: 1152	n:3180000
SLC6A5   3180000 perm   4391 sec   (724 perm/sec)   p_kst 3.622642e-04   p_cons 8.141509e-04   p_joint 9.433962e-06

Joint ci ratio: 7.040493e-01	ci left: 6.345110e-06	ci right 1.342532e-05	k: 30	n:3190000
Cons ci ratio: 7.687577e-02	ci left: 7.831058e-04	ci right 8.460192e-04	k: 2597	n:3190000
KS ci ratio: 1.152732e-01	ci left: 3.414900e-04	ci right 3.835635e-04	k: 1155	n:3190000
SLC6A5   3190000 perm   4417 sec   (722 perm/sec)   p_kst 3.620690e-04   p_cons 8.141066e-04   p_joint 9.404389e-06

Joint ci ratio: 7.040493e-01	ci left: 6.325282e-06	ci right 1.338337e-05	k: 30	n:3200000
Cons ci ratio: 7.678718e-02	ci left: 7.824976e-04	ci right 8.452864e-04	k: 2603	n:3200000
KS ci ratio: 1.151736e-01	ci left: 3.410299e-04	ci right 3.830079e-04	k: 1157	n:3200000
SLC6A5   3200000 perm   4443 sec   (720 perm/sec)   p_kst 3.615625e-04   p_cons 8.134375e-04   p_joint 9.375000e-06

Joint ci ratio: 7.040493e-01	ci left: 6.305577e-06	ci right 1.334168e-05	k: 30	n:3210000
Cons ci ratio: 7.672832e-02	ci left: 7.812821e-04	ci right 8.439231e-04	k: 2607	n:3210000
KS ci ratio: 1.150743e-01	ci left: 3.405726e-04	ci right 3.824557e-04	k: 1159	n:3210000
SLC6A5   3210000 perm   4468 sec   (718 perm/sec)   p_kst 3.610592e-04   p_cons 8.121495e-04   p_joint 9.345794e-06

Joint ci ratio: 7.040493e-01	ci left: 6.285994e-06	ci right 1.330024e-05	k: 30	n:3220000
Cons ci ratio: 7.656699e-02	ci left: 7.822064e-04	ci right 8.447839e-04	k: 2618	n:3220000
KS ci ratio: 1.148764e-01	ci left: 3.407214e-04	ci right 3.825459e-04	k: 1163	n:3220000
SLC6A5   3220000 perm   4494 sec   (717 perm/sec)   p_kst 3.611801e-04   p_cons 8.130435e-04   p_joint 9.316770e-06

Joint ci ratio: 6.929611e-01	ci left: 6.521060e-06	ci right 1.362289e-05	k: 31	n:3230000
Cons ci ratio: 7.646488e-02	ci left: 7.819104e-04	ci right 8.443771e-04	k: 2625	n:3230000
KS ci ratio: 1.143860e-01	ci left: 3.426738e-04	ci right 3.845462e-04	k: 1173	n:3230000
SLC6A5   3230000 perm   4520 sec   (715 perm/sec)   p_kst 3.631579e-04   p_cons 8.126935e-04   p_joint 9.597523e-06

Joint ci ratio: 6.929611e-01	ci left: 6.500934e-06	ci right 1.358084e-05	k: 31	n:3240000
Cons ci ratio: 7.633418e-02	ci left: 7.822218e-04	ci right 8.446018e-04	k: 2634	n:3240000
KS ci ratio: 1.141432e-01	ci left: 3.431153e-04	ci right 3.849467e-04	k: 1178	n:3240000
SLC6A5   3240000 perm   4545 sec   (713 perm/sec)   p_kst 3.635802e-04   p_cons 8.129630e-04   p_joint 9.567901e-06

Joint ci ratio: 5.384489e-01	ci left: 1.194959e-05	ci right 2.098182e-05	k: 52	n:3250000
Cons ci ratio: 7.626189e-02	ci left: 7.813241e-04	ci right 8.435708e-04	k: 2639	n:3250000
KS ci ratio: 1.140465e-01	ci left: 3.426573e-04	ci right 3.843952e-04	k: 1180	n:3250000
SLC6A5   3250000 perm   4571 sec   (711 perm/sec)   p_kst 3.630769e-04   p_cons 8.120000e-04   p_joint 1.600000e-05

Joint ci ratio: 5.384490e-01	ci left: 1.191293e-05	ci right 2.091746e-05	k: 52	n:3260000
Cons ci ratio: 7.617540e-02	ci left: 7.807328e-04	ci right 8.428588e-04	k: 2645	n:3260000
KS ci ratio: 1.138059e-01	ci left: 3.430963e-04	ci right 3.847935e-04	k: 1185	n:3260000
SLC6A5   3260000 perm   4597 sec   (709 perm/sec)   p_kst 3.634969e-04   p_cons 8.113497e-04   p_joint 1.595092e-05

Joint ci ratio: 5.384490e-01	ci left: 1.187650e-05	ci right 2.085349e-05	k: 52	n:3270000
Cons ci ratio: 7.611794e-02	ci left: 7.795452e-04	ci right 8.415278e-04	k: 2649	n:3270000
KS ci ratio: 1.133764e-01	ci left: 3.447212e-04	ci right 3.864472e-04	k: 1194	n:3270000
SLC6A5   3270000 perm   4623 sec   (707 perm/sec)   p_kst 3.651376e-04   p_cons 8.100917e-04   p_joint 1.590214e-05

Joint ci ratio: 5.334400e-01	ci left: 1.210388e-05	ci right 2.113571e-05	k: 53	n:3280000
Cons ci ratio: 7.598900e-02	ci left: 7.798602e-04	ci right 8.417582e-04	k: 2658	n:3280000
KS ci ratio: 1.131399e-01	ci left: 3.451514e-04	ci right 3.868365e-04	k: 1199	n:3280000
SLC6A5   3280000 perm   4649 sec   (706 perm/sec)   p_kst 3.655488e-04   p_cons 8.103659e-04   p_joint 1.615854e-05

Joint ci ratio: 5.717866e-01	ci left: 1.023643e-05	ci right 1.864967e-05	k: 46	n:3290000
Cons ci ratio: 7.590343e-02	ci left: 7.792789e-04	ci right 8.410580e-04	k: 2664	n:3290000
KS ci ratio: 1.129988e-01	ci left: 3.449884e-04	ci right 3.865984e-04	k: 1202	n:3290000
SLC6A5   3290000 perm   4675 sec   (704 perm/sec)   p_kst 3.653495e-04   p_cons 8.097264e-04   p_joint 1.398176e-05

Joint ci ratio: 5.717866e-01	ci left: 1.020541e-05	ci right 1.859315e-05	k: 46	n:3300000
Cons ci ratio: 7.580396e-02	ci left: 7.789984e-04	ci right 8.406708e-04	k: 2671	n:3300000
KS ci ratio: 1.129050e-01	ci left: 3.445319e-04	ci right 3.860500e-04	k: 1204	n:3300000
SLC6A5   3300000 perm   4700 sec   (702 perm/sec)   p_kst 3.648485e-04   p_cons 8.093939e-04   p_joint 1.393939e-05

Joint ci ratio: 5.717866e-01	ci left: 1.017457e-05	ci right 1.853698e-05	k: 46	n:3310000
Cons ci ratio: 7.570487e-02	ci left: 7.787197e-04	ci right 8.402859e-04	k: 2678	n:3310000
KS ci ratio: 1.127647e-01	ci left: 3.443718e-04	ci right 3.858156e-04	k: 1207	n:3310000
SLC6A5   3310000 perm   4727 sec   (700 perm/sec)   p_kst 3.646526e-04   p_cons 8.090634e-04   p_joint 1.389728e-05

Joint ci ratio: 5.717866e-01	ci left: 1.014393e-05	ci right 1.848115e-05	k: 46	n:3320000
Cons ci ratio: 7.562026e-02	ci left: 7.781472e-04	ci right 8.395963e-04	k: 2684	n:3320000
KS ci ratio: 1.126715e-01	ci left: 3.439199e-04	ci right 3.852729e-04	k: 1209	n:3320000
SLC6A5   3320000 perm   4754 sec   (698 perm/sec)   p_kst 3.641566e-04   p_cons 8.084337e-04   p_joint 1.385542e-05

Joint ci ratio: 5.717866e-01	ci left: 1.011347e-05	ci right 1.842565e-05	k: 46	n:3330000
Cons ci ratio: 7.557811e-02	ci left: 7.766943e-04	ci right 8.379930e-04	k: 2687	n:3330000
KS ci ratio: 1.125785e-01	ci left: 3.434708e-04	ci right 3.847335e-04	k: 1211	n:3330000
SLC6A5   3330000 perm   4780 sec   (697 perm/sec)   p_kst 3.636637e-04   p_cons 8.069069e-04   p_joint 1.381381e-05

Joint ci ratio: 5.717867e-01	ci left: 1.008319e-05	ci right 1.837048e-05	k: 46	n:3340000
Cons ci ratio: 7.546589e-02	ci left: 7.767188e-04	ci right 8.379244e-04	k: 2695	n:3340000
KS ci ratio: 1.124395e-01	ci left: 3.433154e-04	ci right 3.845050e-04	k: 1214	n:3340000
SLC6A5   3340000 perm   4807 sec   (695 perm/sec)   p_kst 3.634731e-04   p_cons 8.068862e-04   p_joint 1.377246e-05

Joint ci ratio: 5.717867e-01	ci left: 1.005309e-05	ci right 1.831565e-05	k: 46	n:3350000
Cons ci ratio: 7.532630e-02	ci left: 7.773291e-04	ci right 8.384645e-04	k: 2705	n:3350000
KS ci ratio: 1.123009e-01	ci left: 3.431609e-04	ci right 3.842779e-04	k: 1217	n:3350000
SLC6A5   3350000 perm   4833 sec   (693 perm/sec)   p_kst 3.632836e-04   p_cons 8.074627e-04   p_joint 1.373134e-05

Joint ci ratio: 5.717867e-01	ci left: 1.002317e-05	ci right 1.826113e-05	k: 46	n:3360000
Cons ci ratio: 7.514595e-02	ci left: 7.788119e-04	ci right 8.399109e-04	k: 2718	n:3360000
KS ci ratio: 1.121170e-01	ci left: 3.432967e-04	ci right 3.843581e-04	k: 1221	n:3360000
SLC6A5   3360000 perm   4860 sec   (691 perm/sec)   p_kst 3.633929e-04   p_cons 8.089286e-04   p_joint 1.369048e-05

Joint ci ratio: 5.717867e-01	ci left: 9.993424e-06	ci right 1.820695e-05	k: 46	n:3370000
Cons ci ratio: 7.507699e-02	ci left: 7.779566e-04	ci right 8.389301e-04	k: 2723	n:3370000
KS ci ratio: 1.118883e-01	ci left: 3.437201e-04	ci right 3.847428e-04	k: 1226	n:3370000
SLC6A5   3370000 perm   4886 sec   (690 perm/sec)   p_kst 3.637982e-04   p_cons 8.080119e-04   p_joint 1.364985e-05

Joint ci ratio: 5.717867e-01	ci left: 9.963857e-06	ci right 1.815308e-05	k: 46	n:3380000
Cons ci ratio: 7.504951e-02	ci left: 7.762356e-04	ci right 8.370509e-04	k: 2725	n:3380000
KS ci ratio: 1.117064e-01	ci left: 3.438535e-04	ci right 3.848210e-04	k: 1230	n:3380000
SLC6A5   3380000 perm   4913 sec   (688 perm/sec)   p_kst 3.639053e-04   p_cons 8.062130e-04   p_joint 1.360947e-05

Joint ci ratio: 5.717867e-01	ci left: 9.934465e-06	ci right 1.809953e-05	k: 46	n:3390000
Cons ci ratio: 7.499456e-02	ci left: 7.751036e-04	ci right 8.357838e-04	k: 2729	n:3390000
KS ci ratio: 1.116157e-01	ci left: 3.434127e-04	ci right 3.842923e-04	k: 1232	n:3390000
SLC6A5   3390000 perm   4940 sec   (686 perm/sec)   p_kst 3.634218e-04   p_cons 8.050147e-04   p_joint 1.356932e-05

Joint ci ratio: 5.717867e-01	ci left: 9.905246e-06	ci right 1.804630e-05	k: 46	n:3400000
Cons ci ratio: 7.491230e-02	ci left: 7.745555e-04	ci right 8.351234e-04	k: 2735	n:3400000
KS ci ratio: 1.115706e-01	ci left: 3.426886e-04	ci right 3.834644e-04	k: 1233	n:3400000
SLC6A5   3400000 perm   4967 sec   (685 perm/sec)   p_kst 3.626471e-04   p_cons 8.044118e-04   p_joint 1.352941e-05

Joint ci ratio: 5.717867e-01	ci left: 9.876199e-06	ci right 1.799338e-05	k: 46	n:3410000
Cons ci ratio: 7.478938e-02	ci left: 7.748740e-04	ci right 8.353631e-04	k: 2744	n:3410000
KS ci ratio: 1.113902e-01	ci left: 3.428239e-04	ci right 3.835456e-04	k: 1237	n:3410000
SLC6A5   3410000 perm   4994 sec   (683 perm/sec)   p_kst 3.627566e-04   p_cons 8.046921e-04   p_joint 1.348974e-05

Joint ci ratio: 5.717868e-01	ci left: 9.847321e-06	ci right 1.794076e-05	k: 46	n:3420000
Cons ci ratio: 7.466707e-02	ci left: 7.751907e-04	ci right 8.356012e-04	k: 2753	n:3420000
KS ci ratio: 1.112106e-01	ci left: 3.429585e-04	ci right 3.836262e-04	k: 1241	n:3420000
SLC6A5   3420000 perm   5021 sec   (681 perm/sec)   p_kst 3.628655e-04   p_cons 8.049708e-04   p_joint 1.345029e-05

Joint ci ratio: 5.779685e-01	ci left: 9.569493e-06	ci right 1.755493e-05	k: 45	n:3430000
Cons ci ratio: 7.457237e-02	ci left: 7.749334e-04	ci right 8.352440e-04	k: 2760	n:3430000
KS ci ratio: 1.109874e-01	ci left: 3.433759e-04	ci right 3.840060e-04	k: 1246	n:3430000
SLC6A5   3430000 perm   5049 sec   (679 perm/sec)   p_kst 3.632653e-04   p_cons 8.046647e-04   p_joint 1.311953e-05

Joint ci ratio: 5.779685e-01	ci left: 9.541675e-06	ci right 1.750390e-05	k: 45	n:3440000
Cons ci ratio: 7.442423e-02	ci left: 7.758188e-04	ci right 8.360731e-04	k: 2771	n:3440000
KS ci ratio: 1.108098e-01	ci left: 3.435082e-04	ci right 3.840847e-04	k: 1250	n:3440000
SLC6A5   3440000 perm   5077 sec   (678 perm/sec)   p_kst 3.633721e-04   p_cons 8.055233e-04   p_joint 1.308140e-05

Joint ci ratio: 5.779685e-01	ci left: 9.514018e-06	ci right 1.745316e-05	k: 45	n:3450000
Cons ci ratio: 7.434384e-02	ci left: 7.752768e-04	ci right 8.354212e-04	k: 2777	n:3450000
KS ci ratio: 1.108099e-01	ci left: 3.425126e-04	ci right 3.829714e-04	k: 1250	n:3450000
SLC6A5   3450000 perm   5104 sec   (676 perm/sec)   p_kst 3.623188e-04   p_cons 8.049275e-04   p_joint 1.304348e-05

Joint ci ratio: 5.779685e-01	ci left: 9.486521e-06	ci right 1.740272e-05	k: 45	n:3460000
Cons ci ratio: 7.425036e-02	ci left: 7.750217e-04	ci right 8.350674e-04	k: 2784	n:3460000
KS ci ratio: 1.106332e-01	ci left: 3.426467e-04	ci right 3.830527e-04	k: 1254	n:3460000
SLC6A5   3460000 perm   5131 sec   (674 perm/sec)   p_kst 3.624277e-04   p_cons 8.046243e-04   p_joint 1.300578e-05

Joint ci ratio: 5.779686e-01	ci left: 9.459182e-06	ci right 1.735257e-05	k: 45	n:3470000
Cons ci ratio: 7.419714e-02	ci left: 7.739195e-04	ci right 8.338350e-04	k: 2788	n:3470000
KS ci ratio: 1.104573e-01	ci left: 3.427801e-04	ci right 3.831334e-04	k: 1258	n:3470000
SLC6A5   3470000 perm   5158 sec   (673 perm/sec)   p_kst 3.625360e-04   p_cons 8.034582e-04   p_joint 1.296830e-05

Joint ci ratio: 5.779686e-01	ci left: 9.432000e-06	ci right 1.730270e-05	k: 45	n:3480000
Cons ci ratio: 7.410421e-02	ci left: 7.736698e-04	ci right 8.334877e-04	k: 2795	n:3480000
KS ci ratio: 1.101950e-01	ci left: 3.434717e-04	ci right 3.838041e-04	k: 1264	n:3480000
SLC6A5   3480000 perm   5185 sec   (671 perm/sec)   p_kst 3.632184e-04   p_cons 8.031609e-04   p_joint 1.293103e-05

Joint ci ratio: 5.779686e-01	ci left: 9.404975e-06	ci right 1.725313e-05	k: 45	n:3490000
Cons ci ratio: 7.405130e-02	ci left: 7.725778e-04	ci right 8.322669e-04	k: 2799	n:3490000
KS ci ratio: 1.101080e-01	ci left: 3.430448e-04	ci right 3.832932e-04	k: 1266	n:3490000
SLC6A5   3490000 perm   5213 sec   (670 perm/sec)   p_kst 3.627507e-04   p_cons 8.020057e-04   p_joint 1.289398e-05

Joint ci ratio: 5.779686e-01	ci left: 9.378103e-06	ci right 1.720383e-05	k: 45	n:3500000
Cons ci ratio: 7.387994e-02	ci left: 7.740161e-04	ci right 8.336719e-04	k: 2812	n:3500000
KS ci ratio: 1.099779e-01	ci left: 3.428982e-04	ci right 3.830788e-04	k: 1269	n:3500000
SLC6A5   3500000 perm   5241 sec   (668 perm/sec)   p_kst 3.625714e-04   p_cons 8.034286e-04   p_joint 1.285714e-05

Joint ci ratio: 3.720640e-01	ci left: 2.575694e-05	ci right 3.777189e-05	k: 110	n:3510000
Cons ci ratio: 7.369672e-02	ci left: 7.757259e-04	ci right 8.353590e-04	k: 2826	n:3510000
KS ci ratio: 1.097190e-01	ci left: 3.435837e-04	ci right 3.837438e-04	k: 1275	n:3510000
SLC6A5   3510000 perm   5268 sec   (666 perm/sec)   p_kst 3.632479e-04   p_cons 8.051282e-04   p_joint 3.133903e-05

Joint ci ratio: 3.720640e-01	ci left: 2.568377e-05	ci right 3.766458e-05	k: 110	n:3520000
Cons ci ratio: 7.356670e-02	ci left: 7.763108e-04	ci right 8.358790e-04	k: 2836	n:3520000
KS ci ratio: 1.095902e-01	ci left: 3.434365e-04	ci right 3.835292e-04	k: 1278	n:3520000
SLC6A5   3520000 perm   5296 sec   (665 perm/sec)   p_kst 3.630682e-04   p_cons 8.056818e-04   p_joint 3.125000e-05

Joint ci ratio: 3.720640e-01	ci left: 2.561101e-05	ci right 3.755788e-05	k: 110	n:3530000
Cons ci ratio: 7.347612e-02	ci left: 7.760582e-04	ci right 8.355305e-04	k: 2843	n:3530000
KS ci ratio: 1.095047e-01	ci left: 3.430147e-04	ci right 3.830248e-04	k: 1280	n:3530000
SLC6A5   3530000 perm   5324 sec   (663 perm/sec)   p_kst 3.626062e-04   p_cons 8.053824e-04   p_joint 3.116147e-05

Joint ci ratio: 3.720640e-01	ci left: 2.553866e-05	ci right 3.745179e-05	k: 110	n:3540000
Cons ci ratio: 7.343745e-02	ci left: 7.746978e-04	ci right 8.340333e-04	k: 2846	n:3540000
KS ci ratio: 1.093767e-01	ci left: 3.428700e-04	ci right 3.828135e-04	k: 1283	n:3540000
SLC6A5   3540000 perm   5353 sec   (661 perm/sec)   p_kst 3.624294e-04   p_cons 8.039548e-04   p_joint 3.107345e-05

Joint ci ratio: 3.703993e-01	ci left: 2.572213e-05	ci right 3.765414e-05	k: 111	n:3550000
Cons ci ratio: 7.327030e-02	ci left: 7.761103e-04	ci right 8.354130e-04	k: 2859	n:3550000
KS ci ratio: 1.091643e-01	ci left: 3.432741e-04	ci right 3.831821e-04	k: 1288	n:3550000
SLC6A5   3550000 perm   5382 sec   (660 perm/sec)   p_kst 3.628169e-04   p_cons 8.053521e-04   p_joint 3.126761e-05

Joint ci ratio: 3.687567e-01	ci left: 2.590469e-05	ci right 3.785525e-05	k: 112	n:3560000
Cons ci ratio: 7.316804e-02	ci left: 7.761363e-04	ci right 8.353547e-04	k: 2867	n:3560000
KS ci ratio: 1.089953e-01	ci left: 3.434028e-04	ci right 3.832600e-04	k: 1292	n:3560000
SLC6A5   3560000 perm   5411 sec   (658 perm/sec)   p_kst 3.629213e-04   p_cons 8.053371e-04   p_joint 3.146067e-05

Joint ci ratio: 3.687567e-01	ci left: 2.583213e-05	ci right 3.774921e-05	k: 112	n:3570000
Cons ci ratio: 7.301541e-02	ci left: 7.772622e-04	ci right 8.364375e-04	k: 2879	n:3570000
KS ci ratio: 1.088691e-01	ci left: 3.432583e-04	ci right 3.830496e-04	k: 1295	n:3570000
SLC6A5   3570000 perm   5439 sec   (656 perm/sec)   p_kst 3.627451e-04   p_cons 8.064426e-04   p_joint 3.137255e-05

Joint ci ratio: 3.687567e-01	ci left: 2.575997e-05	ci right 3.764376e-05	k: 112	n:3580000
Cons ci ratio: 7.286373e-02	ci left: 7.783819e-04	ci right 8.375141e-04	k: 2891	n:3580000
KS ci ratio: 1.088272e-01	ci left: 3.425712e-04	ci right 3.822666e-04	k: 1296	n:3580000
SLC6A5   3580000 perm   5468 sec   (655 perm/sec)   p_kst 3.620112e-04   p_cons 8.075419e-04   p_joint 3.128492e-05

Joint ci ratio: 3.687567e-01	ci left: 2.568822e-05	ci right 3.753891e-05	k: 112	n:3590000
Cons ci ratio: 7.280085e-02	ci left: 7.775811e-04	ci right 8.365994e-04	k: 2896	n:3590000
KS ci ratio: 1.087015e-01	ci left: 3.424299e-04	ci right 3.820602e-04	k: 1299	n:3590000
SLC6A5   3590000 perm   5496 sec   (653 perm/sec)   p_kst 3.618384e-04   p_cons 8.066852e-04   p_joint 3.119777e-05

Joint ci ratio: 3.687567e-01	ci left: 2.561686e-05	ci right 3.743463e-05	k: 112	n:3600000
Cons ci ratio: 7.272560e-02	ci left: 7.770575e-04	ci right 8.359725e-04	k: 2902	n:3600000
KS ci ratio: 1.085763e-01	ci left: 3.422894e-04	ci right 3.818548e-04	k: 1302	n:3600000
SLC6A5   3600000 perm   5525 sec   (652 perm/sec)   p_kst 3.616667e-04   p_cons 8.061111e-04   p_joint 3.111111e-05

Joint ci ratio: 3.687568e-01	ci left: 2.554590e-05	ci right 3.733094e-05	k: 112	n:3610000
Cons ci ratio: 7.262560e-02	ci left: 7.770808e-04	ci right 8.359131e-04	k: 2910	n:3610000
KS ci ratio: 1.083686e-01	ci left: 3.426887e-04	ci right 3.822197e-04	k: 1307	n:3610000
SLC6A5   3610000 perm   5553 sec   (650 perm/sec)   p_kst 3.620499e-04   p_cons 8.060942e-04   p_joint 3.102493e-05

Joint ci ratio: 3.671358e-01	ci left: 2.572603e-05	ci right 3.752949e-05	k: 113	n:3620000
Cons ci ratio: 7.251358e-02	ci left: 7.773752e-04	ci right 8.361352e-04	k: 2919	n:3620000
KS ci ratio: 1.081620e-01	ci left: 3.430859e-04	ci right 3.825824e-04	k: 1312	n:3620000
SLC6A5   3620000 perm   5582 sec   (649 perm/sec)   p_kst 3.624309e-04   p_cons 8.063536e-04   p_joint 3.121547e-05

Joint ci ratio: 3.671358e-01	ci left: 2.565516e-05	ci right 3.742610e-05	k: 113	n:3630000
Cons ci ratio: 7.242683e-02	ci left: 7.771271e-04	ci right 8.357951e-04	k: 2926	n:3630000
KS ci ratio: 1.079977e-01	ci left: 3.432129e-04	ci right 3.826602e-04	k: 1316	n:3630000
SLC6A5   3630000 perm   5611 sec   (647 perm/sec)   p_kst 3.625344e-04   p_cons 8.060606e-04   p_joint 3.112948e-05

Joint ci ratio: 3.671358e-01	ci left: 2.558468e-05	ci right 3.732328e-05	k: 113	n:3640000
Cons ci ratio: 7.234039e-02	ci left: 7.768804e-04	ci right 8.354569e-04	k: 2933	n:3640000
KS ci ratio: 1.079158e-01	ci left: 3.428046e-04	ci right 3.821732e-04	k: 1318	n:3640000
SLC6A5   3640000 perm   5640 sec   (645 perm/sec)   p_kst 3.620879e-04   p_cons 8.057692e-04   p_joint 3.104396e-05

Joint ci ratio: 3.671359e-01	ci left: 2.551458e-05	ci right 3.722102e-05	k: 113	n:3650000
Cons ci ratio: 7.224197e-02	ci left: 7.769041e-04	ci right 8.353993e-04	k: 2941	n:3650000
KS ci ratio: 1.077933e-01	ci left: 3.426651e-04	ci right 3.819702e-04	k: 1321	n:3650000
SLC6A5   3650000 perm   5670 sec   (644 perm/sec)   p_kst 3.619178e-04   p_cons 8.057534e-04   p_joint 3.095890e-05

Joint ci ratio: 3.671359e-01	ci left: 2.544487e-05	ci right 3.711933e-05	k: 113	n:3660000
Cons ci ratio: 7.213171e-02	ci left: 7.771961e-04	ci right 8.356202e-04	k: 2950	n:3660000
KS ci ratio: 1.075900e-01	ci left: 3.430582e-04	ci right 3.823295e-04	k: 1326	n:3660000
SLC6A5   3660000 perm   5700 sec   (642 perm/sec)   p_kst 3.622951e-04   p_cons 8.060109e-04   p_joint 3.087432e-05

Joint ci ratio: 3.671359e-01	ci left: 2.537554e-05	ci right 3.701819e-05	k: 113	n:3670000
Cons ci ratio: 7.205852e-02	ci left: 7.766838e-04	ci right 8.350077e-04	k: 2956	n:3670000
KS ci ratio: 1.075090e-01	ci left: 3.426537e-04	ci right 3.818473e-04	k: 1328	n:3670000
SLC6A5   3670000 perm   5729 sec   (641 perm/sec)   p_kst 3.618529e-04   p_cons 8.054496e-04   p_joint 3.079019e-05

Joint ci ratio: 3.655361e-01	ci left: 2.555331e-05	ci right 3.721424e-05	k: 114	n:3680000
Cons ci ratio: 7.203422e-02	ci left: 7.751069e-04	ci right 8.332919e-04	k: 2958	n:3680000
KS ci ratio: 1.073879e-01	ci left: 3.425159e-04	ci right 3.816468e-04	k: 1331	n:3680000
SLC6A5   3680000 perm   5758 sec   (639 perm/sec)   p_kst 3.616848e-04   p_cons 8.038043e-04   p_joint 3.097826e-05

Joint ci ratio: 3.655361e-01	ci left: 2.548406e-05	ci right 3.711339e-05	k: 114	n:3690000
Cons ci ratio: 7.196132e-02	ci left: 7.746031e-04	ci right 8.326890e-04	k: 2964	n:3690000
KS ci ratio: 1.071468e-01	ci left: 3.431701e-04	ci right 3.822822e-04	k: 1337	n:3690000
SLC6A5   3690000 perm   5787 sec   (638 perm/sec)   p_kst 3.623306e-04   p_cons 8.032520e-04   p_joint 3.089431e-05

Joint ci ratio: 3.655362e-01	ci left: 2.541518e-05	ci right 3.701308e-05	k: 114	n:3700000
Cons ci ratio: 7.190075e-02	ci left: 7.738366e-04	ci right 8.318141e-04	k: 2969	n:3700000
KS ci ratio: 1.070269e-01	ci left: 3.430317e-04	ci right 3.820815e-04	k: 1340	n:3700000
SLC6A5   3700000 perm   5817 sec   (636 perm/sec)   p_kst 3.621622e-04   p_cons 8.024324e-04   p_joint 3.081081e-05

Joint ci ratio: 3.655362e-01	ci left: 2.534668e-05	ci right 3.691332e-05	k: 114	n:3710000
Cons ci ratio: 7.182825e-02	ci left: 7.733389e-04	ci right 8.312184e-04	k: 2975	n:3710000
KS ci ratio: 1.069074e-01	ci left: 3.428941e-04	ci right 3.818819e-04	k: 1343	n:3710000
SLC6A5   3710000 perm   5847 sec   (635 perm/sec)   p_kst 3.619946e-04   p_cons 8.018868e-04   p_joint 3.072776e-05

Joint ci ratio: 3.639571e-01	ci left: 2.552273e-05	ci right 3.710743e-05	k: 115	n:3720000
Cons ci ratio: 7.169584e-02	ci left: 7.741640e-04	ci right 8.319939e-04	k: 2986	n:3720000
KS ci ratio: 1.068280e-01	ci left: 3.424956e-04	ci right 3.814073e-04	k: 1345	n:3720000
SLC6A5   3720000 perm   5876 sec   (633 perm/sec)   p_kst 3.615591e-04   p_cons 8.026882e-04   p_joint 3.091398e-05

Joint ci ratio: 3.639572e-01	ci left: 2.545430e-05	ci right 3.700795e-05	k: 115	n:3730000
Cons ci ratio: 7.158806e-02	ci left: 7.744582e-04	ci right 8.322195e-04	k: 2995	n:3730000
KS ci ratio: 1.065906e-01	ci left: 3.431430e-04	ci right 3.820363e-04	k: 1351	n:3730000
SLC6A5   3730000 perm   5905 sec   (632 perm/sec)   p_kst 3.621984e-04   p_cons 8.029491e-04   p_joint 3.083110e-05

Joint ci ratio: 3.687570e-01	ci left: 2.465794e-05	ci right 3.603334e-05	k: 112	n:3740000
Cons ci ratio: 7.148077e-02	ci left: 7.747508e-04	ci right 8.324437e-04	k: 3004	n:3740000
KS ci ratio: 1.063548e-01	ci left: 3.437871e-04	ci right 3.826618e-04	k: 1357	n:3740000
SLC6A5   3740000 perm   5935 sec   (630 perm/sec)   p_kst 3.628342e-04   p_cons 8.032086e-04   p_joint 2.994652e-05

Joint ci ratio: 3.671360e-01	ci left: 2.483419e-05	ci right 3.622847e-05	k: 113	n:3750000
Cons ci ratio: 7.133844e-02	ci left: 7.758277e-04	ci right 8.334810e-04	k: 3016	n:3750000
KS ci ratio: 1.062376e-01	ci left: 3.436491e-04	ci right 3.824626e-04	k: 1360	n:3750000
SLC6A5   3750000 perm   5964 sec   (629 perm/sec)   p_kst 3.626667e-04   p_cons 8.042667e-04   p_joint 3.013333e-05

Joint ci ratio: 3.671360e-01	ci left: 2.476815e-05	ci right 3.613211e-05	k: 113	n:3760000
Cons ci ratio: 7.130304e-02	ci left: 7.745479e-04	ci right 8.320764e-04	k: 3019	n:3760000
KS ci ratio: 1.061986e-01	ci left: 3.429940e-04	ci right 3.817184e-04	k: 1361	n:3760000
SLC6A5   3760000 perm   5994 sec   (627 perm/sec)   p_kst 3.619681e-04   p_cons 8.029255e-04   p_joint 3.005319e-05

Joint ci ratio: 3.671360e-01	ci left: 2.470245e-05	ci right 3.603627e-05	k: 113	n:3770000
Cons ci ratio: 7.123234e-02	ci left: 7.740566e-04	ci right 8.314892e-04	k: 3025	n:3770000
KS ci ratio: 1.060042e-01	ci left: 3.433752e-04	ci right 3.820674e-04	k: 1366	n:3770000
SLC6A5   3770000 perm   6024 sec   (626 perm/sec)   p_kst 3.623342e-04   p_cons 8.023873e-04   p_joint 2.997347e-05

Joint ci ratio: 3.655363e-01	ci left: 2.487730e-05	ci right 3.622974e-05	k: 114	n:3780000
Cons ci ratio: 7.111491e-02	ci left: 7.746072e-04	ci right 8.319820e-04	k: 3035	n:3780000
KS ci ratio: 1.058494e-01	ci left: 3.434970e-04	ci right 3.821428e-04	k: 1370	n:3780000
SLC6A5   3780000 perm   6054 sec   (624 perm/sec)   p_kst 3.624339e-04   p_cons 8.029101e-04   p_joint 3.015873e-05

Joint ci ratio: 3.655363e-01	ci left: 2.481166e-05	ci right 3.613414e-05	k: 114	n:3790000
Cons ci ratio: 7.098640e-02	ci left: 7.754142e-04	ci right 8.327408e-04	k: 3046	n:3790000
KS ci ratio: 1.058495e-01	ci left: 3.425907e-04	ci right 3.811345e-04	k: 1370	n:3790000
SLC6A5   3790000 perm   6084 sec   (623 perm/sec)   p_kst 3.614776e-04   p_cons 8.036939e-04   p_joint 3.007916e-05

Joint ci ratio: 3.655363e-01	ci left: 2.474636e-05	ci right 3.603906e-05	k: 114	n:3800000
Cons ci ratio: 7.092825e-02	ci left: 7.746661e-04	ci right 8.318885e-04	k: 3051	n:3800000
KS ci ratio: 1.057724e-01	ci left: 3.422015e-04	ci right 3.806718e-04	k: 1372	n:3800000
SLC6A5   3800000 perm   6114 sec   (622 perm/sec)   p_kst 3.610526e-04   p_cons 8.028947e-04   p_joint 3.000000e-05

Joint ci ratio: 3.655363e-01	ci left: 2.468141e-05	ci right 3.594446e-05	k: 114	n:3810000
Cons ci ratio: 7.076608e-02	ci left: 7.762423e-04	ci right 8.334446e-04	k: 3065	n:3810000
KS ci ratio: 1.056954e-01	ci left: 3.418144e-04	ci right 3.802115e-04	k: 1374	n:3810000
SLC6A5   3810000 perm   6143 sec   (620 perm/sec)   p_kst 3.606299e-04   p_cons 8.044619e-04   p_joint 2.992126e-05

Joint ci ratio: 3.655363e-01	ci left: 2.461680e-05	ci right 3.585037e-05	k: 114	n:3820000
Cons ci ratio: 7.066243e-02	ci left: 7.765246e-04	ci right 8.336605e-04	k: 3074	n:3820000
KS ci ratio: 1.054656e-01	ci left: 3.424488e-04	ci right 3.808283e-04	k: 1380	n:3820000
SLC6A5   3820000 perm   6173 sec   (619 perm/sec)   p_kst 3.612565e-04   p_cons 8.047120e-04   p_joint 2.984293e-05

Joint ci ratio: 3.655363e-01	ci left: 2.455253e-05	ci right 3.575677e-05	k: 114	n:3830000
Cons ci ratio: 7.061656e-02	ci left: 7.755231e-04	ci right 8.325467e-04	k: 3078	n:3830000
KS ci ratio: 1.053893e-01	ci left: 3.420631e-04	ci right 3.803699e-04	k: 1382	n:3830000
SLC6A5   3830000 perm   6203 sec   (617 perm/sec)   p_kst 3.608355e-04   p_cons 8.036554e-04   p_joint 2.976501e-05

Joint ci ratio: 3.655364e-01	ci left: 2.448859e-05	ci right 3.566365e-05	k: 114	n:3840000
Cons ci ratio: 7.053643e-02	ci left: 7.752942e-04	ci right 8.322337e-04	k: 3085	n:3840000
KS ci ratio: 1.053512e-01	ci left: 3.414259e-04	ci right 3.796467e-04	k: 1383	n:3840000
SLC6A5   3840000 perm   6233 sec   (616 perm/sec)   p_kst 3.601563e-04   p_cons 8.033854e-04   p_joint 2.968750e-05

Joint ci ratio: 3.655364e-01	ci left: 2.442498e-05	ci right 3.557102e-05	k: 114	n:3850000
Cons ci ratio: 7.042240e-02	ci left: 7.758321e-04	ci right 8.327152e-04	k: 3095	n:3850000
KS ci ratio: 1.053132e-01	ci left: 3.407919e-04	ci right 3.789271e-04	k: 1384	n:3850000
SLC6A5   3850000 perm   6263 sec   (615 perm/sec)   p_kst 3.594805e-04   p_cons 8.038961e-04   p_joint 2.961039e-05

Joint ci ratio: 3.639573e-01	ci left: 2.459703e-05	ci right 3.576157e-05	k: 115	n:3860000
Cons ci ratio: 7.034294e-02	ci left: 7.756037e-04	ci right 8.324033e-04	k: 3102	n:3860000
KS ci ratio: 1.052373e-01	ci left: 3.404135e-04	ci right 3.784772e-04	k: 1386	n:3860000
SLC6A5   3860000 perm   6293 sec   (613 perm/sec)   p_kst 3.590674e-04   p_cons 8.036269e-04   p_joint 2.979275e-05

Joint ci ratio: 3.639574e-01	ci left: 2.453347e-05	ci right 3.566917e-05	k: 115	n:3870000
Cons ci ratio: 7.026374e-02	ci left: 7.753766e-04	ci right 8.320930e-04	k: 3109	n:3870000
KS ci ratio: 1.051237e-01	ci left: 3.402887e-04	ci right 3.782948e-04	k: 1389	n:3870000
SLC6A5   3870000 perm   6324 sec   (612 perm/sec)   p_kst 3.589147e-04   p_cons 8.033592e-04   p_joint 2.971576e-05

Joint ci ratio: 3.639574e-01	ci left: 2.447024e-05	ci right 3.557724e-05	k: 115	n:3880000
Cons ci ratio: 7.019607e-02	ci left: 7.748974e-04	ci right 8.315220e-04	k: 3115	n:3880000
KS ci ratio: 1.050859e-01	ci left: 3.396626e-04	ci right 3.775844e-04	k: 1390	n:3880000
SLC6A5   3880000 perm   6355 sec   (611 perm/sec)   p_kst 3.582474e-04   p_cons 8.028351e-04   p_joint 2.963918e-05

Joint ci ratio: 3.639574e-01	ci left: 2.440733e-05	ci right 3.548578e-05	k: 115	n:3890000
Cons ci ratio: 7.007247e-02	ci left: 7.756836e-04	ci right 8.322617e-04	k: 3126	n:3890000
KS ci ratio: 1.050105e-01	ci left: 3.392901e-04	ci right 3.771414e-04	k: 1392	n:3890000
SLC6A5   3890000 perm   6386 sec   (609 perm/sec)   p_kst 3.578406e-04   p_cons 8.035990e-04   p_joint 2.956298e-05

Joint ci ratio: 3.639574e-01	ci left: 2.434475e-05	ci right 3.539479e-05	k: 115	n:3900000
Cons ci ratio: 6.998301e-02	ci left: 7.757100e-04	ci right 8.322149e-04	k: 3134	n:3900000
KS ci ratio: 1.049352e-01	ci left: 3.389195e-04	ci right 3.767006e-04	k: 1394	n:3900000
SLC6A5   3900000 perm   6417 sec   (608 perm/sec)   p_kst 3.574359e-04   p_cons 8.035897e-04   p_joint 2.948718e-05

Joint ci ratio: 3.639574e-01	ci left: 2.428249e-05	ci right 3.530427e-05	k: 115	n:3910000
Cons ci ratio: 6.989389e-02	ci left: 7.757364e-04	ci right 8.321683e-04	k: 3142	n:3910000
KS ci ratio: 1.047851e-01	ci left: 3.390489e-04	ci right 3.767870e-04	k: 1398	n:3910000
SLC6A5   3910000 perm   6448 sec   (606 perm/sec)   p_kst 3.575448e-04   p_cons 8.035806e-04   p_joint 2.941176e-05

Joint ci ratio: 3.639574e-01	ci left: 2.422054e-05	ci right 3.521420e-05	k: 115	n:3920000
Cons ci ratio: 6.978295e-02	ci left: 7.762639e-04	ci right 8.326409e-04	k: 3152	n:3920000
KS ci ratio: 1.045983e-01	ci left: 3.394261e-04	ci right 3.771347e-04	k: 1403	n:3920000
SLC6A5   3920000 perm   6479 sec   (605 perm/sec)   p_kst 3.579082e-04   p_cons 8.040816e-04   p_joint 2.933673e-05

Joint ci ratio: 3.639574e-01	ci left: 2.415891e-05	ci right 3.512460e-05	k: 115	n:3930000
Cons ci ratio: 6.968355e-02	ci left: 7.765388e-04	ci right 8.328523e-04	k: 3161	n:3930000
KS ci ratio: 1.043385e-01	ci left: 3.402970e-04	ci right 3.780028e-04	k: 1410	n:3930000
SLC6A5   3930000 perm   6510 sec   (604 perm/sec)   p_kst 3.587786e-04   p_cons 8.043257e-04   p_joint 2.926209e-05

Joint ci ratio: 3.639575e-01	ci left: 2.409759e-05	ci right 3.503545e-05	k: 115	n:3940000
Cons ci ratio: 6.965057e-02	ci left: 7.753161e-04	ci right 8.315131e-04	k: 3164	n:3940000
KS ci ratio: 1.043016e-01	ci left: 3.396805e-04	ci right 3.773038e-04	k: 1411	n:3940000
SLC6A5   3940000 perm   6542 sec   (602 perm/sec)   p_kst 3.581218e-04   p_cons 8.030457e-04   p_joint 2.918782e-05

Joint ci ratio: 3.639575e-01	ci left: 2.403659e-05	ci right 3.494675e-05	k: 115	n:3950000
Cons ci ratio: 6.957368e-02	ci left: 7.750945e-04	ci right 8.312110e-04	k: 3171	n:3950000
KS ci ratio: 1.041541e-01	ci left: 3.398068e-04	ci right 3.773877e-04	k: 1415	n:3950000
SLC6A5   3950000 perm   6573 sec   (601 perm/sec)   p_kst 3.582278e-04   p_cons 8.027848e-04   p_joint 2.911392e-05

Joint ci ratio: 3.608598e-01	ci left: 2.443496e-05	ci right 3.540935e-05	k: 117	n:3960000
Cons ci ratio: 6.949705e-02	ci left: 7.748742e-04	ci right 8.309104e-04	k: 3178	n:3960000
KS ci ratio: 1.040440e-01	ci left: 3.396866e-04	ci right 3.772120e-04	k: 1418	n:3960000
SLC6A5   3960000 perm   6605 sec   (600 perm/sec)   p_kst 3.580808e-04   p_cons 8.025253e-04   p_joint 2.954545e-05

Joint ci ratio: 3.608598e-01	ci left: 2.437341e-05	ci right 3.532016e-05	k: 117	n:3970000
Cons ci ratio: 6.944249e-02	ci left: 7.741599e-04	ci right 8.300988e-04	k: 3183	n:3970000
KS ci ratio: 1.039708e-01	ci left: 3.393216e-04	ci right 3.767787e-04	k: 1420	n:3970000
SLC6A5   3970000 perm   6636 sec   (598 perm/sec)   p_kst 3.576826e-04   p_cons 8.017632e-04   p_joint 2.947103e-05

Joint ci ratio: 3.608599e-01	ci left: 2.431217e-05	ci right 3.523141e-05	k: 117	n:3980000
Cons ci ratio: 6.933368e-02	ci left: 7.746838e-04	ci right 8.305692e-04	k: 3193	n:3980000
KS ci ratio: 1.038977e-01	ci left: 3.389585e-04	ci right 3.763476e-04	k: 1422	n:3980000
SLC6A5   3980000 perm   6668 sec   (597 perm/sec)   p_kst 3.572864e-04   p_cons 8.022613e-04   p_joint 2.939698e-05

Joint ci ratio: 3.593404e-01	ci left: 2.447919e-05	ci right 3.541632e-05	k: 118	n:3990000
Cons ci ratio: 6.927950e-02	ci left: 7.739736e-04	ci right 8.297625e-04	k: 3198	n:3990000
KS ci ratio: 1.037156e-01	ci left: 3.393296e-04	ci right 3.766900e-04	k: 1427	n:3990000
SLC6A5   3990000 perm   6699 sec   (596 perm/sec)   p_kst 3.576441e-04   p_cons 8.015038e-04   p_joint 2.957393e-05

Joint ci ratio: 3.593404e-01	ci left: 2.441799e-05	ci right 3.532778e-05	k: 118	n:4000000
Cons ci ratio: 6.920383e-02	ci left: 7.737584e-04	ci right 8.294684e-04	k: 3205	n:4000000
KS ci ratio: 1.036431e-01	ci left: 3.389683e-04	ci right 3.762612e-04	k: 1429	n:4000000
SLC6A5   4000000 perm   6731 sec   (594 perm/sec)   p_kst 3.572500e-04   p_cons 8.012500e-04   p_joint 2.950000e-05

Joint ci ratio: 2.035068e-01	ci left: 8.310642e-05	ci right 1.021665e-04	k: 370	n:4010000
Cons ci ratio: 6.911765e-02	ci left: 7.737893e-04	ci right 8.294294e-04	k: 3213	n:4010000
KS ci ratio: 1.034984e-01	ci left: 3.390946e-04	ci right 3.763463e-04	k: 1433	n:4010000
SLC6A5   4010000 perm   6762 sec   (593 perm/sec)   p_kst 3.573566e-04   p_cons 8.012469e-04   p_joint 9.226933e-05

Joint ci ratio: 2.029605e-01	ci left: 8.337188e-05	ci right 1.024351e-04	k: 372	n:4020000
Cons ci ratio: 6.908546e-02	ci left: 7.725978e-04	ci right 8.281253e-04	k: 3216	n:4020000
KS ci ratio: 1.032826e-01	ci left: 3.397051e-04	ci right 3.769412e-04	k: 1439	n:4020000
SLC6A5   4020000 perm   6793 sec   (592 perm/sec)   p_kst 3.579602e-04   p_cons 8.000000e-04   p_joint 9.253731e-05

Joint ci ratio: 2.029605e-01	ci left: 8.316500e-05	ci right 1.021810e-04	k: 372	n:4030000
Cons ci ratio: 6.903186e-02	ci left: 7.719000e-04	ci right 8.273325e-04	k: 3221	n:4030000
KS ci ratio: 1.032109e-01	ci left: 3.393456e-04	ci right 3.765149e-04	k: 1441	n:4030000
SLC6A5   4030000 perm   6824 sec   (591 perm/sec)   p_kst 3.575682e-04   p_cons 7.992556e-04   p_joint 9.230769e-05

Joint ci ratio: 2.021491e-01	ci left: 8.366406e-05	ci right 1.027082e-04	k: 375	n:4040000
Cons ci ratio: 6.892496e-02	ci left: 7.724219e-04	ci right 8.278026e-04	k: 3231	n:4040000
KS ci ratio: 1.029613e-01	ci left: 3.401936e-04	ci right 3.773603e-04	k: 1448	n:4040000
SLC6A5   4040000 perm   6856 sec   (589 perm/sec)   p_kst 3.584158e-04   p_cons 7.997525e-04   p_joint 9.282178e-05

Joint ci ratio: 2.021492e-01	ci left: 8.345748e-05	ci right 1.024546e-04	k: 375	n:4050000
Cons ci ratio: 6.883982e-02	ci left: 7.724560e-04	ci right 8.277680e-04	k: 3239	n:4050000
KS ci ratio: 1.029258e-01	ci left: 3.395942e-04	ci right 3.766818e-04	k: 1449	n:4050000
SLC6A5   4050000 perm   6888 sec   (588 perm/sec)   p_kst 3.577778e-04   p_cons 7.997531e-04   p_joint 9.259259e-05

Joint ci ratio: 2.018809e-01	ci left: 8.348577e-05	ci right 1.024610e-04	k: 376	n:4060000
Cons ci ratio: 6.876558e-02	ci left: 7.722478e-04	ci right 8.274829e-04	k: 3246	n:4060000
KS ci ratio: 1.028195e-01	ci left: 3.394777e-04	ci right 3.765120e-04	k: 1452	n:4060000
SLC6A5   4060000 perm   6920 sec   (587 perm/sec)   p_kst 3.576355e-04   p_cons 7.995074e-04   p_joint 9.261084e-05

Joint ci ratio: 2.018809e-01	ci left: 8.328064e-05	ci right 1.022093e-04	k: 376	n:4070000
Cons ci ratio: 6.862830e-02	ci left: 7.734897e-04	ci right 8.286987e-04	k: 3259	n:4070000
KS ci ratio: 1.027488e-01	ci left: 3.391223e-04	ci right 3.760909e-04	k: 1454	n:4070000
SLC6A5   4070000 perm   6952 sec   (585 perm/sec)   p_kst 3.572482e-04   p_cons 8.007371e-04   p_joint 9.238329e-05

Joint ci ratio: 2.016137e-01	ci left: 8.330924e-05	ci right 1.022162e-04	k: 377	n:4080000
Cons ci ratio: 6.856524e-02	ci left: 7.730392e-04	ci right 8.281634e-04	k: 3265	n:4080000
KS ci ratio: 1.024324e-01	ci left: 3.404404e-04	ci right 3.774316e-04	k: 1463	n:4080000
SLC6A5   4080000 perm   6984 sec   (584 perm/sec)   p_kst 3.585784e-04   p_cons 8.002451e-04   p_joint 9.240196e-05

Joint ci ratio: 2.010824e-01	ci left: 8.356990e-05	ci right 1.024799e-04	k: 379	n:4090000
Cons ci ratio: 6.846050e-02	ci left: 7.735523e-04	ci right 8.286254e-04	k: 3275	n:4090000
KS ci ratio: 1.022580e-01	ci left: 3.407993e-04	ci right 3.777625e-04	k: 1468	n:4090000
SLC6A5   4090000 perm   7016 sec   (583 perm/sec)   p_kst 3.589242e-04   p_cons 8.007335e-04   p_joint 9.266504e-05

Joint ci ratio: 2.005553e-01	ci left: 8.382935e-05	ci right 1.027423e-04	k: 381	n:4100000
Cons ci ratio: 6.834583e-02	ci left: 7.743026e-04	ci right 8.293332e-04	k: 3286	n:4100000
KS ci ratio: 1.020844e-01	ci left: 3.411564e-04	ci right 3.780918e-04	k: 1473	n:4100000
SLC6A5   4100000 perm   7048 sec   (582 perm/sec)   p_kst 3.592683e-04   p_cons 8.014634e-04   p_joint 9.292683e-05

Joint ci ratio: 2.000323e-01	ci left: 8.408760e-05	ci right 1.030033e-04	k: 383	n:4110000
Cons ci ratio: 6.823173e-02	ci left: 7.750493e-04	ci right 8.300374e-04	k: 3297	n:4110000
KS ci ratio: 1.019116e-01	ci left: 3.415119e-04	ci right 3.784194e-04	k: 1478	n:4110000
SLC6A5   4110000 perm   7081 sec   (580 perm/sec)   p_kst 3.596107e-04   p_cons 8.021898e-04   p_joint 9.318735e-05

Joint ci ratio: 2.000323e-01	ci left: 8.388350e-05	ci right 1.027533e-04	k: 383	n:4120000
Cons ci ratio: 6.812850e-02	ci left: 7.755540e-04	ci right 8.304913e-04	k: 3307	n:4120000
KS ci ratio: 1.019117e-01	ci left: 3.406829e-04	ci right 3.775009e-04	k: 1478	n:4120000
SLC6A5   4120000 perm   7114 sec   (579 perm/sec)   p_kst 3.587379e-04   p_cons 8.026699e-04   p_joint 9.296117e-05

Joint ci ratio: 1.997724e-01	ci left: 8.391041e-05	ci right 1.027587e-04	k: 384	n:4130000
Cons ci ratio: 6.808738e-02	ci left: 7.746281e-04	ci right 8.294655e-04	k: 3311	n:4130000
KS ci ratio: 1.017398e-01	ci left: 3.410379e-04	ci right 3.778284e-04	k: 1483	n:4130000
SLC6A5   4130000 perm   7146 sec   (578 perm/sec)   p_kst 3.590799e-04   p_cons 8.016949e-04   p_joint 9.297821e-05

Joint ci ratio: 1.995134e-01	ci left: 8.393720e-05	ci right 1.027641e-04	k: 385	n:4140000
Cons ci ratio: 6.799505e-02	ci left: 7.748940e-04	ci right 8.296728e-04	k: 3320	n:4140000
KS ci ratio: 1.016030e-01	ci left: 3.411557e-04	ci right 3.779065e-04	k: 1487	n:4140000
SLC6A5   4140000 perm   7178 sec   (577 perm/sec)   p_kst 3.591787e-04   p_cons 8.019324e-04   p_joint 9.299517e-05

Joint ci ratio: 1.992555e-01	ci left: 8.396387e-05	ci right 1.027694e-04	k: 386	n:4150000
Cons ci ratio: 6.790310e-02	ci left: 7.751586e-04	ci right 8.298791e-04	k: 3329	n:4150000
KS ci ratio: 1.015007e-01	ci left: 3.410382e-04	ci right 3.777371e-04	k: 1490	n:4150000
SLC6A5   4150000 perm   7211 sec   (576 perm/sec)   p_kst 3.590361e-04   p_cons 8.021687e-04   p_joint 9.301205e-05

Joint ci ratio: 1.989985e-01	ci left: 8.399044e-05	ci right 1.027748e-04	k: 387	n:4160000
Cons ci ratio: 6.784202e-02	ci left: 7.747131e-04	ci right 8.293510e-04	k: 3335	n:4160000
KS ci ratio: 1.014327e-01	ci left: 3.406870e-04	ci right 3.773221e-04	k: 1492	n:4160000
SLC6A5   4160000 perm   7243 sec   (574 perm/sec)   p_kst 3.586538e-04   p_cons 8.016827e-04   p_joint 9.302885e-05

Joint ci ratio: 1.989986e-01	ci left: 8.378902e-05	ci right 1.025283e-04	k: 387	n:4170000
Cons ci ratio: 6.773042e-02	ci left: 7.754484e-04	ci right 8.300447e-04	k: 3346	n:4170000
KS ci ratio: 1.013988e-01	ci left: 3.401037e-04	ci right 3.766631e-04	k: 1493	n:4170000
SLC6A5   4170000 perm   7277 sec   (573 perm/sec)   p_kst 3.580336e-04   p_cons 8.023981e-04   p_joint 9.280576e-05

Joint ci ratio: 2.138449e-01	ci left: 7.179051e-05	ci right 8.920158e-05	k: 335	n:4180000
Cons ci ratio: 6.764963e-02	ci left: 7.754748e-04	ci right 8.300053e-04	k: 3354	n:4180000
KS ci ratio: 1.012296e-01	ci left: 3.404559e-04	ci right 3.769885e-04	k: 1498	n:4180000
SLC6A5   4180000 perm   7310 sec   (572 perm/sec)   p_kst 3.583732e-04   p_cons 8.023923e-04   p_joint 8.014354e-05

Joint ci ratio: 2.138449e-01	ci left: 7.161917e-05	ci right 8.898869e-05	k: 335	n:4190000
Cons ci ratio: 6.755906e-02	ci left: 7.757357e-04	ci right 8.302086e-04	k: 3363	n:4190000
KS ci ratio: 1.010948e-01	ci left: 3.405739e-04	ci right 3.770675e-04	k: 1502	n:4190000
SLC6A5   4190000 perm   7344 sec   (571 perm/sec)   p_kst 3.584726e-04   p_cons 8.026253e-04   p_joint 7.995227e-05

Joint ci ratio: 2.138450e-01	ci left: 7.144865e-05	ci right 8.877682e-05	k: 335	n:4200000
Cons ci ratio: 6.745885e-02	ci left: 7.762294e-04	ci right 8.306531e-04	k: 3373	n:4200000
KS ci ratio: 1.009940e-01	ci left: 3.404592e-04	ci right 3.769021e-04	k: 1505	n:4200000
SLC6A5   4200000 perm   7377 sec   (569 perm/sec)   p_kst 3.583333e-04   p_cons 8.030952e-04   p_joint 7.976190e-05

Joint ci ratio: 2.135274e-01	ci left: 7.150375e-05	ci right 8.881617e-05	k: 336	n:4210000
Cons ci ratio: 6.737902e-02	ci left: 7.762539e-04	ci right 8.306123e-04	k: 3381	n:4210000
KS ci ratio: 1.009605e-01	ci left: 3.398820e-04	ci right 3.762504e-04	k: 1506	n:4210000
SLC6A5   4210000 perm   7410 sec   (568 perm/sec)   p_kst 3.577197e-04   p_cons 8.030879e-04   p_joint 7.980998e-05

Joint ci ratio: 2.135275e-01	ci left: 7.133431e-05	ci right 8.860570e-05	k: 336	n:4220000
Cons ci ratio: 6.735916e-02	ci left: 7.748803e-04	ci right 8.291259e-04	k: 3383	n:4220000
KS ci ratio: 1.009271e-01	ci left: 3.393076e-04	ci right 3.756017e-04	k: 1507	n:4220000
SLC6A5   4220000 perm   7443 sec   (567 perm/sec)   p_kst 3.571090e-04   p_cons 8.016588e-04   p_joint 7.962085e-05

Joint ci ratio: 2.601725e-01	ci left: 4.668894e-05	ci right 6.086627e-05	k: 226	n:4230000
Cons ci ratio: 6.725983e-02	ci left: 7.753728e-04	ci right 8.295697e-04	k: 3393	n:4230000
KS ci ratio: 1.007935e-01	ci left: 3.394272e-04	ci right 3.756832e-04	k: 1511	n:4230000
SLC6A5   4230000 perm   7477 sec   (566 perm/sec)   p_kst 3.572104e-04   p_cons 8.021277e-04   p_joint 5.342790e-05

Joint ci ratio: 2.584701e-01	ci left: 4.724038e-05	ci right 6.147615e-05	k: 229	n:4240000
Cons ci ratio: 6.716095e-02	ci left: 7.758629e-04	ci right 8.300112e-04	k: 3403	n:4240000
KS ci ratio: 1.005609e-01	ci left: 3.402361e-04	ci right 3.764897e-04	k: 1518	n:4240000
SLC6A5   4240000 perm   7510 sec   (565 perm/sec)   p_kst 3.580189e-04   p_cons 8.025943e-04   p_joint 5.400943e-05

Joint ci ratio: 2.584701e-01	ci left: 4.712923e-05	ci right 6.133150e-05	k: 229	n:4250000
Cons ci ratio: 6.708217e-02	ci left: 7.758881e-04	ci right 8.299722e-04	k: 3411	n:4250000
KS ci ratio: 1.002643e-01	ci left: 3.415000e-04	ci right 3.777746e-04	k: 1527	n:4250000
SLC6A5   4250000 perm   7543 sec   (563 perm/sec)   p_kst 3.592941e-04   p_cons 8.025882e-04   p_joint 5.388235e-05

Joint ci ratio: 2.630863e-01	ci left: 4.526339e-05	ci right 5.918714e-05	k: 221	n:4260000
Cons ci ratio: 6.694492e-02	ci left: 7.772981e-04	ci right 8.313653e-04	k: 3425	n:4260000
KS ci ratio: 1.000028e-01	ci left: 3.425293e-04	ci right 3.788128e-04	k: 1535	n:4260000
SLC6A5   4260000 perm   7576 sec   (562 perm/sec)   p_kst 3.603286e-04   p_cons 8.039906e-04   p_joint 5.187793e-05

Joint ci ratio: 2.630863e-01	ci left: 4.515739e-05	ci right 5.904852e-05	k: 221	n:4270000
Cons ci ratio: 6.690591e-02	ci left: 7.763988e-04	ci right 8.303708e-04	k: 3429	n:4270000
KS ci ratio: 9.990528e-02	ci left: 3.424121e-04	ci right 3.786458e-04	k: 1538	n:4270000
SLC6A5   4270000 perm   7611 sec   (561 perm/sec)   p_kst 3.601874e-04   p_cons 8.030445e-04   p_joint 5.175644e-05

Joint ci ratio: 2.630863e-01	ci left: 4.505188e-05	ci right 5.891056e-05	k: 221	n:4280000
Cons ci ratio: 6.682802e-02	ci left: 7.764227e-04	ci right 8.303311e-04	k: 3437	n:4280000
KS ci ratio: 9.984044e-02	ci left: 3.420677e-04	ci right 3.782400e-04	k: 1540	n:4280000
SLC6A5   4280000 perm   7644 sec   (560 perm/sec)   p_kst 3.598131e-04   p_cons 8.030374e-04   p_joint 5.163551e-05

Joint ci ratio: 2.624958e-01	ci left: 4.516461e-05	ci right 5.902166e-05	k: 222	n:4290000
Cons ci ratio: 6.675040e-02	ci left: 7.764465e-04	ci right 8.302915e-04	k: 3445	n:4290000
KS ci ratio: 9.961441e-02	ci left: 3.428614e-04	ci right 3.790307e-04	k: 1547	n:4290000
SLC6A5   4290000 perm   7678 sec   (559 perm/sec)   p_kst 3.606061e-04   p_cons 8.030303e-04   p_joint 5.174825e-05

Joint ci ratio: 2.613265e-01	ci left: 4.549416e-05	ci right 5.937998e-05	k: 224	n:4300000
Cons ci ratio: 6.666340e-02	ci left: 7.766990e-04	ci right 8.304885e-04	k: 3454	n:4300000
KS ci ratio: 9.942189e-02	ci left: 3.434246e-04	ci right 3.795793e-04	k: 1553	n:4300000
SLC6A5   4300000 perm   7712 sec   (558 perm/sec)   p_kst 3.611628e-04   p_cons 8.032558e-04   p_joint 5.209302e-05

Joint ci ratio: 2.613265e-01	ci left: 4.538861e-05	ci right 5.924221e-05	k: 224	n:4310000
Cons ci ratio: 6.659598e-02	ci left: 7.764939e-04	ci right 8.302128e-04	k: 3461	n:4310000
KS ci ratio: 9.932607e-02	ci left: 3.433066e-04	ci right 3.794120e-04	k: 1556	n:4310000
SLC6A5   4310000 perm   7747 sec   (556 perm/sec)   p_kst 3.610209e-04   p_cons 8.030162e-04   p_joint 5.197216e-05

Joint ci ratio: 2.679590e-01	ci left: 4.290612e-05	ci right 5.639028e-05	k: 213	n:4320000
Cons ci ratio: 6.653836e-02	ci left: 7.760623e-04	ci right 8.297031e-04	k: 3467	n:4320000
KS ci ratio: 9.916695e-02	ci left: 3.436406e-04	ci right 3.797198e-04	k: 1561	n:4320000
SLC6A5   4320000 perm   7781 sec   (555 perm/sec)   p_kst 3.613426e-04   p_cons 8.025463e-04   p_joint 4.930556e-05

Joint ci ratio: 2.679590e-01	ci left: 4.280703e-05	ci right 5.626005e-05	k: 213	n:4330000
Cons ci ratio: 6.642351e-02	ci left: 7.769953e-04	ci right 8.306043e-04	k: 3479	n:4330000
KS ci ratio: 9.913526e-02	ci left: 3.430722e-04	ci right 3.790796e-04	k: 1562	n:4330000
SLC6A5   4330000 perm   7815 sec   (554 perm/sec)   p_kst 3.607390e-04   p_cons 8.034642e-04   p_joint 4.919169e-05

Joint ci ratio: 2.679590e-01	ci left: 4.270840e-05	ci right 5.613042e-05	k: 213	n:4340000
Cons ci ratio: 6.637586e-02	ci left: 7.763379e-04	ci right 8.298617e-04	k: 3484	n:4340000
KS ci ratio: 9.904026e-02	ci left: 3.429558e-04	ci right 3.789145e-04	k: 1565	n:4340000
SLC6A5   4340000 perm   7849 sec   (553 perm/sec)   p_kst 3.605991e-04   p_cons 8.027650e-04   p_joint 4.907834e-05

Joint ci ratio: 2.679591e-01	ci left: 4.261022e-05	ci right 5.600139e-05	k: 213	n:4350000
Cons ci ratio: 6.628082e-02	ci left: 7.768140e-04	ci right 8.302909e-04	k: 3494	n:4350000
KS ci ratio: 9.888251e-02	ci left: 3.432884e-04	ci right 3.792213e-04	k: 1570	n:4350000
SLC6A5   4350000 perm   7883 sec   (552 perm/sec)   p_kst 3.609195e-04   p_cons 8.032184e-04   p_joint 4.896552e-05

Joint ci ratio: 2.673352e-01	ci left: 4.272646e-05	ci right 5.611765e-05	k: 214	n:4360000
Cons ci ratio: 6.618619e-02	ci left: 7.772879e-04	ci right 8.307181e-04	k: 3504	n:4360000
KS ci ratio: 9.888255e-02	ci left: 3.425010e-04	ci right 3.783515e-04	k: 1570	n:4360000
SLC6A5   4360000 perm   7917 sec   (551 perm/sec)   p_kst 3.600917e-04   p_cons 8.036697e-04   p_joint 4.908257e-05

Joint ci ratio: 2.673352e-01	ci left: 4.262868e-05	ci right 5.598924e-05	k: 214	n:4370000
Cons ci ratio: 6.612963e-02	ci left: 7.768595e-04	ci right 8.302129e-04	k: 3510	n:4370000
KS ci ratio: 9.881969e-02	ci left: 3.421636e-04	ci right 3.779547e-04	k: 1572	n:4370000
SLC6A5   4370000 perm   7952 sec   (550 perm/sec)   p_kst 3.597254e-04   p_cons 8.032037e-04   p_joint 4.897025e-05

Joint ci ratio: 2.667156e-01	ci left: 4.274439e-05	ci right 5.610497e-05	k: 215	n:4380000
Cons ci ratio: 6.603564e-02	ci left: 7.773312e-04	ci right 8.306382e-04	k: 3520	n:4380000
KS ci ratio: 9.875694e-02	ci left: 3.418277e-04	ci right 3.775597e-04	k: 1574	n:4380000
SLC6A5   4380000 perm   7986 sec   (548 perm/sec)   p_kst 3.593607e-04   p_cons 8.036530e-04   p_joint 4.908676e-05

Joint ci ratio: 2.667156e-01	ci left: 4.264702e-05	ci right 5.597717e-05	k: 215	n:4390000
Cons ci ratio: 6.595140e-02	ci left: 7.775768e-04	ci right 8.308301e-04	k: 3529	n:4390000
KS ci ratio: 9.866303e-02	ci left: 3.417156e-04	ci right 3.773999e-04	k: 1577	n:4390000
SLC6A5   4390000 perm   8020 sec   (547 perm/sec)   p_kst 3.592255e-04   p_cons 8.038724e-04   p_joint 4.897494e-05

Joint ci ratio: 2.667156e-01	ci left: 4.255009e-05	ci right 5.584995e-05	k: 215	n:4400000
Cons ci ratio: 6.587679e-02	ci left: 7.775978e-04	ci right 8.307900e-04	k: 3537	n:4400000
KS ci ratio: 9.853821e-02	ci left: 3.418256e-04	ci right 3.774736e-04	k: 1581	n:4400000
SLC6A5   4400000 perm   8054 sec   (546 perm/sec)   p_kst 3.593182e-04   p_cons 8.038636e-04   p_joint 4.886364e-05

Joint ci ratio: 2.667157e-01	ci left: 4.245361e-05	ci right 5.572330e-05	k: 215	n:4410000
Cons ci ratio: 6.580244e-02	ci left: 7.776187e-04	ci right 8.307500e-04	k: 3545	n:4410000
KS ci ratio: 9.844492e-02	ci left: 3.417140e-04	ci right 3.773147e-04	k: 1584	n:4410000
SLC6A5   4410000 perm   8089 sec   (545 perm/sec)   p_kst 3.591837e-04   p_cons 8.038549e-04   p_joint 4.875283e-05

Joint ci ratio: 2.661004e-01	ci left: 4.256869e-05	ci right 5.583855e-05	k: 216	n:4420000
Cons ci ratio: 6.571908e-02	ci left: 7.778621e-04	ci right 8.309401e-04	k: 3554	n:4420000
KS ci ratio: 9.825909e-02	ci left: 3.422650e-04	ci right 3.778519e-04	k: 1590	n:4420000
SLC6A5   4420000 perm   8124 sec   (544 perm/sec)   p_kst 3.597285e-04   p_cons 8.040724e-04   p_joint 4.886878e-05

Joint ci ratio: 2.661004e-01	ci left: 4.247260e-05	ci right 5.571250e-05	k: 216	n:4430000
Cons ci ratio: 6.565448e-02	ci left: 7.776604e-04	ci right 8.306705e-04	k: 3561	n:4430000
KS ci ratio: 9.816659e-02	ci left: 3.421530e-04	ci right 3.776928e-04	k: 1593	n:4430000
SLC6A5   4430000 perm   8159 sec   (543 perm/sec)   p_kst 3.595937e-04   p_cons 8.038375e-04   p_joint 4.875847e-05

Joint ci ratio: 2.654894e-01	ci left: 4.258716e-05	ci right 5.582722e-05	k: 217	n:4440000
Cons ci ratio: 6.556250e-02	ci left: 7.781242e-04	ci right 8.310888e-04	k: 3571	n:4440000
KS ci ratio: 9.801297e-02	ci left: 3.424808e-04	ci right 3.779959e-04	k: 1598	n:4440000
SLC6A5   4440000 perm   8194 sec   (542 perm/sec)   p_kst 3.599099e-04   p_cons 8.042793e-04   p_joint 4.887387e-05

Joint ci ratio: 2.642798e-01	ci left: 4.291106e-05	ci right 5.618098e-05	k: 219	n:4450000
Cons ci ratio: 6.547091e-02	ci left: 7.785860e-04	ci right 8.315052e-04	k: 3581	n:4450000
KS ci ratio: 9.789061e-02	ci left: 3.425881e-04	ci right 3.780673e-04	k: 1602	n:4450000
SLC6A5   4450000 perm   8229 sec   (541 perm/sec)   p_kst 3.600000e-04   p_cons 8.047191e-04   p_joint 4.921348e-05

Joint ci ratio: 2.630866e-01	ci left: 4.323364e-05	ci right 5.653301e-05	k: 221	n:4460000
Cons ci ratio: 6.541616e-02	ci left: 7.781636e-04	ci right 8.310081e-04	k: 3587	n:4460000
KS ci ratio: 9.770789e-02	ci left: 3.431323e-04	ci right 3.785978e-04	k: 1608	n:4460000
SLC6A5   4460000 perm   8264 sec   (540 perm/sec)   p_kst 3.605381e-04   p_cons 8.042601e-04   p_joint 4.955157e-05

Joint ci ratio: 2.624960e-01	ci left: 4.334590e-05	ci right 5.664496e-05	k: 222	n:4470000
Cons ci ratio: 6.534335e-02	ci left: 7.781832e-04	ci right 8.309680e-04	k: 3595	n:4470000
KS ci ratio: 9.764724e-02	ci left: 3.428012e-04	ci right 3.782092e-04	k: 1610	n:4470000
SLC6A5   4470000 perm   8299 sec   (539 perm/sec)   p_kst 3.601790e-04   p_cons 8.042506e-04   p_joint 4.966443e-05

Joint ci ratio: 2.624961e-01	ci left: 4.324914e-05	ci right 5.651852e-05	k: 222	n:4480000
Cons ci ratio: 6.522552e-02	ci left: 7.793006e-04	ci right 8.320623e-04	k: 3608	n:4480000
KS ci ratio: 9.755645e-02	ci left: 3.426893e-04	ci right 3.780510e-04	k: 1613	n:4480000
SLC6A5   4480000 perm   8334 sec   (538 perm/sec)   p_kst 3.600446e-04   p_cons 8.053571e-04   p_joint 4.955357e-05

Joint ci ratio: 2.624961e-01	ci left: 4.315282e-05	ci right 5.639264e-05	k: 222	n:4490000
Cons ci ratio: 6.512633e-02	ci left: 7.799749e-04	ci right 8.326990e-04	k: 3619	n:4490000
KS ci ratio: 9.749608e-02	ci left: 3.423607e-04	ci right 3.776653e-04	k: 1615	n:4490000
SLC6A5   4490000 perm   8369 sec   (537 perm/sec)   p_kst 3.596882e-04   p_cons 8.060134e-04   p_joint 4.944321e-05

Joint ci ratio: 2.624961e-01	ci left: 4.305692e-05	ci right 5.626733e-05	k: 222	n:4500000
Cons ci ratio: 6.502758e-02	ci left: 7.806463e-04	ci right 8.333327e-04	k: 3630	n:4500000
KS ci ratio: 9.743583e-02	ci left: 3.420335e-04	ci right 3.772813e-04	k: 1617	n:4500000
SLC6A5   4500000 perm   8404 sec   (535 perm/sec)   p_kst 3.593333e-04   p_cons 8.066667e-04   p_joint 4.933333e-05

Joint ci ratio: 2.624961e-01	ci left: 4.296145e-05	ci right 5.614257e-05	k: 222	n:4510000
Cons ci ratio: 6.498288e-02	ci left: 7.800060e-04	ci right 8.326117e-04	k: 3635	n:4510000
KS ci ratio: 9.722570e-02	ci left: 3.427894e-04	ci right 3.780346e-04	k: 1624	n:4510000
SLC6A5   4510000 perm   8440 sec   (534 perm/sec)   p_kst 3.600887e-04   p_cons 8.059867e-04   p_joint 4.922395e-05

Joint ci ratio: 2.624961e-01	ci left: 4.286641e-05	ci right 5.601836e-05	k: 222	n:4520000
Cons ci ratio: 6.492934e-02	ci left: 7.795862e-04	ci right 8.321186e-04	k: 3641	n:4520000
KS ci ratio: 9.716594e-02	ci left: 3.424627e-04	ci right 3.776515e-04	k: 1626	n:4520000
SLC6A5   4520000 perm   8476 sec   (533 perm/sec)   p_kst 3.597345e-04   p_cons 8.055310e-04   p_joint 4.911504e-05

Joint ci ratio: 2.619095e-01	ci left: 4.297802e-05	ci right 5.612992e-05	k: 223	n:4530000
Cons ci ratio: 6.484926e-02	ci left: 7.798198e-04	ci right 8.323007e-04	k: 3650	n:4530000
KS ci ratio: 9.701697e-02	ci left: 3.427837e-04	ci right 3.779484e-04	k: 1631	n:4530000
SLC6A5   4530000 perm   8511 sec   (532 perm/sec)   p_kst 3.600442e-04   p_cons 8.057395e-04   p_joint 4.922737e-05

Joint ci ratio: 2.619095e-01	ci left: 4.288336e-05	ci right 5.600629e-05	k: 223	n:4540000
Cons ci ratio: 6.472524e-02	ci left: 7.811359e-04	ci right 8.336010e-04	k: 3664	n:4540000
KS ci ratio: 9.701701e-02	ci left: 3.420287e-04	ci right 3.771159e-04	k: 1631	n:4540000
SLC6A5   4540000 perm   8547 sec   (531 perm/sec)   p_kst 3.592511e-04   p_cons 8.070485e-04   p_joint 4.911894e-05

Joint ci ratio: 2.613268e-01	ci left: 4.299448e-05	ci right 5.611736e-05	k: 224	n:4550000
Cons ci ratio: 6.463710e-02	ci left: 7.815814e-04	ci right 8.340023e-04	k: 3674	n:4550000
KS ci ratio: 9.689833e-02	ci left: 3.421348e-04	ci right 3.771875e-04	k: 1635	n:4550000
SLC6A5   4550000 perm   8583 sec   (530 perm/sec)   p_kst 3.593407e-04   p_cons 8.074725e-04   p_joint 4.923077e-05

Joint ci ratio: 2.613269e-01	ci left: 4.290019e-05	ci right 5.599429e-05	k: 224	n:4560000
Cons ci ratio: 6.453180e-02	ci left: 7.824565e-04	ci right 8.348474e-04	k: 3686	n:4560000
KS ci ratio: 9.683917e-02	ci left: 3.418124e-04	ci right 3.768096e-04	k: 1637	n:4560000
SLC6A5   4560000 perm   8619 sec   (529 perm/sec)   p_kst 3.589912e-04   p_cons 8.083333e-04   p_joint 4.912281e-05

Joint ci ratio: 2.724526e-01	ci left: 3.913097e-05	ci right 5.167026e-05	k: 206	n:4570000
Cons ci ratio: 6.442702e-02	ci left: 7.833278e-04	ci right 8.356887e-04	k: 3698	n:4570000
KS ci ratio: 9.672114e-02	ci left: 3.419186e-04	ci right 3.768815e-04	k: 1641	n:4570000
SLC6A5   4570000 perm   8654 sec   (528 perm/sec)   p_kst 3.590810e-04   p_cons 8.091904e-04   p_joint 4.507659e-05

Joint ci ratio: 2.724526e-01	ci left: 3.904553e-05	ci right 5.155744e-05	k: 206	n:4580000
Cons ci ratio: 6.435746e-02	ci left: 7.833361e-04	ci right 8.356389e-04	k: 3706	n:4580000
KS ci ratio: 9.672118e-02	ci left: 3.411720e-04	ci right 3.760586e-04	k: 1641	n:4580000
SLC6A5   4580000 perm   8689 sec   (527 perm/sec)   p_kst 3.582969e-04   p_cons 8.091703e-04   p_joint 4.497817e-05

Joint ci ratio: 2.724527e-01	ci left: 3.896046e-05	ci right 5.144512e-05	k: 206	n:4590000
Cons ci ratio: 6.427947e-02	ci left: 7.835587e-04	ci right 8.358107e-04	k: 3715	n:4590000
KS ci ratio: 9.666234e-02	ci left: 3.408539e-04	ci right 3.756856e-04	k: 1643	n:4590000
SLC6A5   4590000 perm   8725 sec   (526 perm/sec)   p_kst 3.579521e-04   p_cons 8.093682e-04   p_joint 4.488017e-05

Joint ci ratio: 2.717969e-01	ci left: 3.907833e-05	ci right 5.156546e-05	k: 207	n:4600000
Cons ci ratio: 6.421039e-02	ci left: 7.835665e-04	ci right 8.357608e-04	k: 3723	n:4600000
KS ci ratio: 9.657428e-02	ci left: 3.407494e-04	ci right 3.755368e-04	k: 1646	n:4600000
SLC6A5   4600000 perm   8760 sec   (525 perm/sec)   p_kst 3.578261e-04   p_cons 8.093478e-04   p_joint 4.500000e-05

Joint ci ratio: 2.711459e-01	ci left: 3.919572e-05	ci right 5.168526e-05	k: 208	n:4610000
Cons ci ratio: 6.414153e-02	ci left: 7.835743e-04	ci right 8.357110e-04	k: 3731	n:4610000
KS ci ratio: 9.648645e-02	ci left: 3.406452e-04	ci right 3.753887e-04	k: 1649	n:4610000
SLC6A5   4610000 perm   8796 sec   (524 perm/sec)   p_kst 3.577007e-04   p_cons 8.093275e-04   p_joint 4.511931e-05

Joint ci ratio: 2.704995e-01	ci left: 3.931263e-05	ci right 5.180449e-05	k: 209	n:4620000
Cons ci ratio: 6.410722e-02	ci left: 7.827302e-04	ci right 8.347818e-04	k: 3735	n:4620000
KS ci ratio: 9.631147e-02	ci left: 3.411753e-04	ci right 3.759061e-04	k: 1655	n:4620000
SLC6A5   4620000 perm   8832 sec   (523 perm/sec)   p_kst 3.582251e-04   p_cons 8.084416e-04   p_joint 4.523810e-05

Joint ci ratio: 2.704995e-01	ci left: 3.922772e-05	ci right 5.169261e-05	k: 209	n:4630000
Cons ci ratio: 6.402158e-02	ci left: 7.831649e-04	ci right 8.351733e-04	k: 3745	n:4630000
KS ci ratio: 9.625338e-02	ci left: 3.408600e-04	ci right 3.755366e-04	k: 1657	n:4630000
SLC6A5   4630000 perm   8869 sec   (522 perm/sec)   p_kst 3.578834e-04   p_cons 8.088553e-04   p_joint 4.514039e-05

Joint ci ratio: 2.704995e-01	ci left: 3.914318e-05	ci right 5.158120e-05	k: 209	n:4640000
Cons ci ratio: 6.397892e-02	ci left: 7.825374e-04	ci right 8.344681e-04	k: 3750	n:4640000
KS ci ratio: 9.610856e-02	ci left: 3.411771e-04	ci right 3.758307e-04	k: 1662	n:4640000
SLC6A5   4640000 perm   8905 sec   (521 perm/sec)   p_kst 3.581897e-04   p_cons 8.081897e-04   p_joint 4.504310e-05

Joint ci ratio: 2.692205e-01	ci left: 3.946001e-05	ci right 5.192941e-05	k: 211	n:4650000
Cons ci ratio: 6.395338e-02	ci left: 7.814893e-04	ci right 8.333291e-04	k: 3753	n:4650000
KS ci ratio: 9.599318e-02	ci left: 3.412829e-04	ci right 3.759034e-04	k: 1666	n:4650000
SLC6A5   4650000 perm   8941 sec   (520 perm/sec)   p_kst 3.582796e-04   p_cons 8.070968e-04   p_joint 4.537634e-05

Joint ci ratio: 2.685878e-01	ci left: 3.957546e-05	ci right 5.204700e-05	k: 212	n:4660000
Cons ci ratio: 6.391936e-02	ci left: 7.806569e-04	ci right 8.324129e-04	k: 3757	n:4660000
KS ci ratio: 9.584952e-02	ci left: 3.415978e-04	ci right 3.761954e-04	k: 1671	n:4660000
SLC6A5   4660000 perm   8977 sec   (519 perm/sec)   p_kst 3.585837e-04   p_cons 8.062232e-04   p_joint 4.549356e-05

Joint ci ratio: 2.685878e-01	ci left: 3.949072e-05	ci right 5.193555e-05	k: 212	n:4670000
Cons ci ratio: 6.381753e-02	ci left: 7.815139e-04	ci right 8.332411e-04	k: 3769	n:4670000
KS ci ratio: 9.579226e-02	ci left: 3.412843e-04	ci right 3.758284e-04	k: 1673	n:4670000
SLC6A5   4670000 perm   9013 sec   (518 perm/sec)   p_kst 3.582441e-04   p_cons 8.070664e-04   p_joint 4.539615e-05

Joint ci ratio: 2.679595e-01	ci left: 3.960564e-05	ci right 5.205258e-05	k: 213	n:4680000
Cons ci ratio: 6.372461e-02	ci left: 7.821569e-04	ci right 8.338485e-04	k: 3780	n:4680000
KS ci ratio: 9.570655e-02	ci left: 3.411807e-04	ci right 3.756817e-04	k: 1676	n:4680000
SLC6A5   4680000 perm   9050 sec   (517 perm/sec)   p_kst 3.581197e-04   p_cons 8.076923e-04   p_joint 4.551282e-05

Joint ci ratio: 2.673356e-01	ci left: 3.972011e-05	ci right 5.216909e-05	k: 214	n:4690000
Cons ci ratio: 6.365730e-02	ci left: 7.821678e-04	ci right 8.338035e-04	k: 3788	n:4690000
KS ci ratio: 9.553577e-02	ci left: 3.417020e-04	ci right 3.761906e-04	k: 1682	n:4690000
SLC6A5   4690000 perm   9086 sec   (516 perm/sec)   p_kst 3.586354e-04   p_cons 8.076759e-04   p_joint 4.562900e-05

Joint ci ratio: 2.667161e-01	ci left: 3.983412e-05	ci right 5.228507e-05	k: 215	n:4700000
Cons ci ratio: 6.363215e-02	ci left: 7.811317e-04	ci right 8.326779e-04	k: 3791	n:4700000
KS ci ratio: 9.545075e-02	ci left: 3.415980e-04	ci right 3.760437e-04	k: 1685	n:4700000
SLC6A5   4700000 perm   9122 sec   (515 perm/sec)   p_kst 3.585106e-04   p_cons 8.065957e-04   p_joint 4.574468e-05

Joint ci ratio: 2.654897e-01	ci left: 4.014585e-05	ci right 5.262695e-05	k: 217	n:4710000
Cons ci ratio: 6.359864e-02	ci left: 7.803090e-04	ci right 8.317728e-04	k: 3795	n:4710000
KS ci ratio: 9.516887e-02	ci left: 3.429453e-04	ci right 3.774190e-04	k: 1695	n:4710000
SLC6A5   4710000 perm   9160 sec   (514 perm/sec)   p_kst 3.598726e-04   p_cons 8.057325e-04   p_joint 4.607219e-05

Joint ci ratio: 2.654897e-01	ci left: 4.006080e-05	ci right 5.251545e-05	k: 217	n:4720000
Cons ci ratio: 6.354009e-02	ci left: 7.801153e-04	ci right 8.315172e-04	k: 3802	n:4720000
KS ci ratio: 9.508481e-02	ci left: 3.428392e-04	ci right 3.772701e-04	k: 1698	n:4720000
SLC6A5   4720000 perm   9197 sec   (513 perm/sec)   p_kst 3.597458e-04   p_cons 8.055085e-04   p_joint 4.597458e-05

Joint ci ratio: 2.654898e-01	ci left: 3.997610e-05	ci right 5.240442e-05	k: 217	n:4730000
Cons ci ratio: 6.349004e-02	ci left: 7.797144e-04	ci right 8.310479e-04	k: 3808	n:4730000
KS ci ratio: 9.502891e-02	ci left: 3.425271e-04	ci right 3.769054e-04	k: 1700	n:4730000
SLC6A5   4730000 perm   9233 sec   (512 perm/sec)   p_kst 3.594080e-04   p_cons 8.050740e-04   p_joint 4.587738e-05

Joint ci ratio: 2.654898e-01	ci left: 3.989176e-05	ci right 5.229386e-05	k: 217	n:4740000
Cons ci ratio: 6.345676e-02	ci left: 7.788999e-04	ci right 8.301519e-04	k: 3812	n:4740000
KS ci ratio: 9.497311e-02	ci left: 3.422164e-04	ci right 3.765422e-04	k: 1702	n:4740000
SLC6A5   4740000 perm   9270 sec   (511 perm/sec)   p_kst 3.590717e-04   p_cons 8.042194e-04   p_joint 4.578059e-05

Joint ci ratio: 2.642802e-01	ci left: 4.020088e-05	ci right 5.263272e-05	k: 219	n:4750000
Cons ci ratio: 6.340690e-02	ci left: 7.785032e-04	ci right 8.296874e-04	k: 3818	n:4750000
KS ci ratio: 9.480622e-02	ci left: 3.427292e-04	ci right 3.770426e-04	k: 1708	n:4750000
SLC6A5   4750000 perm   9306 sec   (510 perm/sec)   p_kst 3.595789e-04   p_cons 8.037895e-04   p_joint 4.610526e-05

Joint ci ratio: 2.642802e-01	ci left: 4.011642e-05	ci right 5.252214e-05	k: 219	n:4760000
Cons ci ratio: 6.334888e-02	ci left: 7.783150e-04	ci right 8.294383e-04	k: 3825	n:4760000
KS ci ratio: 9.466783e-02	ci left: 3.430347e-04	ci right 3.773258e-04	k: 1713	n:4760000
SLC6A5   4760000 perm   9343 sec   (509 perm/sec)   p_kst 3.598739e-04   p_cons 8.035714e-04   p_joint 4.600840e-05

Joint ci ratio: 2.636816e-01	ci left: 4.022809e-05	ci right 5.263552e-05	k: 220	n:4770000
Cons ci ratio: 6.328275e-02	ci left: 7.783339e-04	ci right 8.294031e-04	k: 3833	n:4770000
KS ci ratio: 9.453003e-02	ci left: 3.433389e-04	ci right 3.776078e-04	k: 1718	n:4770000
SLC6A5   4770000 perm   9380 sec   (509 perm/sec)   p_kst 3.601677e-04   p_cons 8.035639e-04   p_joint 4.612159e-05

Joint ci ratio: 2.619099e-01	ci left: 4.073021e-05	ci right 5.319427e-05	k: 223	n:4780000
Cons ci ratio: 6.323331e-02	ci left: 7.779409e-04	ci right 8.289430e-04	k: 3839	n:4780000
KS ci ratio: 9.439284e-02	ci left: 3.436420e-04	ci right 3.778885e-04	k: 1723	n:4780000
SLC6A5   4780000 perm   9416 sec   (508 perm/sec)   p_kst 3.604603e-04   p_cons 8.031381e-04   p_joint 4.665272e-05

Joint ci ratio: 2.613272e-01	ci left: 4.084026e-05	ci right 5.330564e-05	k: 224	n:4790000
Cons ci ratio: 6.315112e-02	ci left: 7.783715e-04	ci right 8.293331e-04	k: 3849	n:4790000
KS ci ratio: 9.417455e-02	ci left: 3.445553e-04	ci right 3.788091e-04	k: 1731	n:4790000
SLC6A5   4790000 perm   9453 sec   (507 perm/sec)   p_kst 3.613779e-04   p_cons 8.035491e-04   p_joint 4.676409e-05

Joint ci ratio: 2.613272e-01	ci left: 4.075517e-05	ci right 5.319459e-05	k: 224	n:4800000
Cons ci ratio: 6.306108e-02	ci left: 7.790055e-04	ci right 8.299332e-04	k: 3860	n:4800000
KS ci ratio: 9.412024e-02	ci left: 3.442444e-04	ci right 3.784464e-04	k: 1733	n:4800000
SLC6A5   4800000 perm   9491 sec   (506 perm/sec)   p_kst 3.610417e-04   p_cons 8.041667e-04   p_joint 4.666667e-05

Joint ci ratio: 2.607484e-01	ci left: 4.086474e-05	ci right 5.330547e-05	k: 225	n:4810000
Cons ci ratio: 6.300400e-02	ci left: 7.788183e-04	ci right 8.296860e-04	k: 3867	n:4810000
KS ci ratio: 9.401186e-02	ci left: 3.443407e-04	ci right 3.785108e-04	k: 1737	n:4810000
SLC6A5   4810000 perm   9530 sec   (505 perm/sec)   p_kst 3.611227e-04   p_cons 8.039501e-04   p_joint 4.677755e-05

Joint ci ratio: 2.607484e-01	ci left: 4.077996e-05	ci right 5.319488e-05	k: 225	n:4820000
Cons ci ratio: 6.294707e-02	ci left: 7.786319e-04	ci right 8.294398e-04	k: 3874	n:4820000
KS ci ratio: 9.387691e-02	ci left: 3.446393e-04	ci right 3.787872e-04	k: 1742	n:4820000
SLC6A5   4820000 perm   9568 sec   (504 perm/sec)   p_kst 3.614108e-04   p_cons 8.037344e-04   p_joint 4.668050e-05

Joint ci ratio: 2.601734e-01	ci left: 4.088905e-05	ci right 5.330527e-05	k: 226	n:4830000
Cons ci ratio: 6.289030e-02	ci left: 7.784463e-04	ci right 8.291946e-04	k: 3881	n:4830000
KS ci ratio: 9.371573e-02	ci left: 3.451389e-04	ci right 3.792743e-04	k: 1748	n:4830000
SLC6A5   4830000 perm   9605 sec   (503 perm/sec)   p_kst 3.619048e-04   p_cons 8.035197e-04   p_joint 4.679089e-05

Joint ci ratio: 2.601734e-01	ci left: 4.080457e-05	ci right 5.319513e-05	k: 226	n:4840000
Cons ci ratio: 6.282560e-02	ci left: 7.784648e-04	ci right 8.291602e-04	k: 3889	n:4840000
KS ci ratio: 9.363546e-02	ci left: 3.450311e-04	ci right 3.791250e-04	k: 1751	n:4840000
SLC6A5   4840000 perm   9642 sec   (502 perm/sec)   p_kst 3.617769e-04   p_cons 8.035124e-04   p_joint 4.669421e-05

Joint ci ratio: 2.601734e-01	ci left: 4.072044e-05	ci right 5.308545e-05	k: 226	n:4850000
Cons ci ratio: 6.276109e-02	ci left: 7.784833e-04	ci right 8.291260e-04	k: 3897	n:4850000
KS ci ratio: 9.355540e-02	ci left: 3.449238e-04	ci right 3.789764e-04	k: 1754	n:4850000
SLC6A5   4850000 perm   9680 sec   (501 perm/sec)   p_kst 3.616495e-04   p_cons 8.035052e-04   p_joint 4.659794e-05

Joint ci ratio: 2.601734e-01	ci left: 4.063665e-05	ci right 5.297622e-05	k: 226	n:4860000
Cons ci ratio: 6.271286e-02	ci left: 7.780967e-04	ci right 8.286739e-04	k: 3903	n:4860000
KS ci ratio: 9.339586e-02	ci left: 3.454197e-04	ci right 3.794600e-04	k: 1760	n:4860000
SLC6A5   4860000 perm   9718 sec   (500 perm/sec)   p_kst 3.621399e-04   p_cons 8.030864e-04   p_joint 4.650206e-05

Joint ci ratio: 2.601734e-01	ci left: 4.055321e-05	ci right 5.286744e-05	k: 226	n:4870000
Cons ci ratio: 6.265672e-02	ci left: 7.779138e-04	ci right 8.284322e-04	k: 3910	n:4870000
KS ci ratio: 9.321076e-02	ci left: 3.461143e-04	ci right 3.801517e-04	k: 1767	n:4870000
SLC6A5   4870000 perm   9756 sec   (499 perm/sec)   p_kst 3.628337e-04   p_cons 8.028747e-04   p_joint 4.640657e-05

Joint ci ratio: 2.601735e-01	ci left: 4.047011e-05	ci right 5.275911e-05	k: 226	n:4880000
Cons ci ratio: 6.258475e-02	ci left: 7.781351e-04	ci right 8.286078e-04	k: 3919	n:4880000
KS ci ratio: 9.307922e-02	ci left: 3.464058e-04	ci right 3.804211e-04	k: 1772	n:4880000
SLC6A5   4880000 perm   9795 sec   (498 perm/sec)   p_kst 3.631148e-04   p_cons 8.030738e-04   p_joint 4.631148e-05

Joint ci ratio: 2.596023e-01	ci left: 4.057852e-05	ci right 5.286901e-05	k: 227	n:4890000
Cons ci ratio: 6.251302e-02	ci left: 7.783555e-04	ci right 8.287825e-04	k: 3928	n:4890000
KS ci ratio: 9.297440e-02	ci left: 3.464964e-04	ci right 3.804802e-04	k: 1776	n:4890000
SLC6A5   4890000 perm   9833 sec   (497 perm/sec)   p_kst 3.631902e-04   p_cons 8.032720e-04   p_joint 4.642127e-05

Joint ci ratio: 2.596023e-01	ci left: 4.049571e-05	ci right 5.276111e-05	k: 227	n:4900000
Cons ci ratio: 6.244947e-02	ci left: 7.783742e-04	ci right 8.287493e-04	k: 3936	n:4900000
KS ci ratio: 9.289602e-02	ci left: 3.463872e-04	ci right 3.803302e-04	k: 1779	n:4900000
SLC6A5   4900000 perm   9872 sec   (496 perm/sec)   p_kst 3.630612e-04   p_cons 8.032653e-04   p_joint 4.632653e-05

Joint ci ratio: 2.590348e-01	ci left: 4.060366e-05	ci right 5.287053e-05	k: 228	n:4910000
Cons ci ratio: 6.239404e-02	ci left: 7.781923e-04	ci right 8.285093e-04	k: 3943	n:4910000
KS ci ratio: 9.281785e-02	ci left: 3.462786e-04	ci right 3.801808e-04	k: 1782	n:4910000
SLC6A5   4910000 perm   9910 sec   (495 perm/sec)   p_kst 3.629328e-04   p_cons 8.030550e-04   p_joint 4.643585e-05

Joint ci ratio: 2.590348e-01	ci left: 4.052114e-05	ci right 5.276307e-05	k: 228	n:4920000
Cons ci ratio: 6.233875e-02	ci left: 7.780112e-04	ci right 8.282703e-04	k: 3950	n:4920000
KS ci ratio: 9.279185e-02	ci left: 3.457733e-04	ci right 3.796160e-04	k: 1783	n:4920000
SLC6A5   4920000 perm   9948 sec   (495 perm/sec)   p_kst 3.623984e-04   p_cons 8.028455e-04   p_joint 4.634146e-05

Joint ci ratio: 2.590348e-01	ci left: 4.043894e-05	ci right 5.265605e-05	k: 228	n:4930000
Cons ci ratio: 6.228360e-02	ci left: 7.778309e-04	ci right 8.280323e-04	k: 3957	n:4930000
KS ci ratio: 9.266208e-02	ci left: 3.460626e-04	ci right 3.798837e-04	k: 1788	n:4930000
SLC6A5   4930000 perm   9986 sec   (494 perm/sec)   p_kst 3.626775e-04   p_cons 8.026369e-04   p_joint 4.624746e-05

Joint ci ratio: 2.590349e-01	ci left: 4.035708e-05	ci right 5.254946e-05	k: 228	n:4940000
Cons ci ratio: 6.223646e-02	ci left: 7.774520e-04	ci right 8.275896e-04	k: 3963	n:4940000
KS ci ratio: 9.258449e-02	ci left: 3.459553e-04	ci right 3.797361e-04	k: 1791	n:4940000
SLC6A5   4940000 perm   10024 sec   (493 perm/sec)   p_kst 3.625506e-04   p_cons 8.022267e-04   p_joint 4.615385e-05

Joint ci ratio: 2.584711e-01	ci left: 4.046447e-05	ci right 5.265839e-05	k: 229	n:4950000
Cons ci ratio: 6.219727e-02	ci left: 7.768757e-04	ci right 8.269435e-04	k: 3968	n:4950000
KS ci ratio: 9.250709e-02	ci left: 3.458484e-04	ci right 3.795890e-04	k: 1794	n:4950000
SLC6A5   4950000 perm   10063 sec   (492 perm/sec)   p_kst 3.624242e-04   p_cons 8.016162e-04   p_joint 4.626263e-05

Joint ci ratio: 2.584711e-01	ci left: 4.038289e-05	ci right 5.255222e-05	k: 229	n:4960000
Cons ci ratio: 6.211124e-02	ci left: 7.774927e-04	ci right 8.275285e-04	k: 3979	n:4960000
KS ci ratio: 9.245562e-02	ci left: 3.455450e-04	ci right 3.792363e-04	k: 1796	n:4960000
SLC6A5   4960000 perm   10102 sec   (491 perm/sec)   p_kst 3.620968e-04   p_cons 8.022177e-04   p_joint 4.616935e-05

Joint ci ratio: 2.579110e-01	ci left: 4.048982e-05	ci right 5.266068e-05	k: 230	n:4970000
Cons ci ratio: 6.208007e-02	ci left: 7.767207e-04	ci right 8.266807e-04	k: 3983	n:4970000
KS ci ratio: 9.235288e-02	ci left: 3.456360e-04	ci right 3.792966e-04	k: 1800	n:4970000
SLC6A5   4970000 perm   10141 sec   (490 perm/sec)   p_kst 3.621730e-04   p_cons 8.014085e-04   p_joint 4.627767e-05

Joint ci ratio: 2.579111e-01	ci left: 4.040852e-05	ci right 5.255494e-05	k: 230	n:4980000
Cons ci ratio: 6.194024e-02	ci left: 7.787195e-04	ci right 8.286912e-04	k: 4001	n:4980000
KS ci ratio: 9.232728e-02	ci left: 3.451381e-04	ci right 3.787404e-04	k: 1801	n:4980000
SLC6A5   4980000 perm   10180 sec   (489 perm/sec)   p_kst 3.616466e-04   p_cons 8.034137e-04   p_joint 4.618474e-05

Joint ci ratio: 2.579111e-01	ci left: 4.032754e-05	ci right 5.244962e-05	k: 230	n:4990000
Cons ci ratio: 6.187843e-02	ci left: 7.787373e-04	ci right 8.286585e-04	k: 4009	n:4990000
KS ci ratio: 9.219944e-02	ci left: 3.454254e-04	ci right 3.790065e-04	k: 1806	n:4990000
SLC6A5   4990000 perm   10219 sec   (488 perm/sec)   p_kst 3.619238e-04   p_cons 8.034068e-04   p_joint 4.609218e-05

Joint ci ratio: 2.573546e-01	ci left: 4.043397e-05	ci right 5.255761e-05	k: 231	n:5000000
Cons ci ratio: 6.181680e-02	ci left: 7.787551e-04	ci right 8.286259e-04	k: 4017	n:5000000
KS ci ratio: 9.207214e-02	ci left: 3.457115e-04	ci right 3.792716e-04	k: 1811	n:5000000
SLC6A5   5000000 perm   10259 sec   (487 perm/sec)   p_kst 3.622000e-04   p_cons 8.034000e-04   p_joint 4.620000e-05

Outputting figure to mutsig2_images.part000000000161/SLC6A5.6_2458_5000000_0.0003622_0.0008034_4.62e-05.png
                gene_name: SLC6A5
               theta_stop: 0.26 
                    nperm: 5000000 
                     p_ks: 0.00036 
        ci_ks_bounds_left: 0.00035 
       ci_ks_bounds_right: 0.00038 
                   p_cons: 0.00080 
      ci_cons_bounds_left: 0.00078 
     ci_cons_bounds_right: 0.00083 
                  p_joint: 4.62e-05 
     ci_joint_bounds_left: 4.04e-05 
    ci_joint_bounds_right: 5.26e-05 

Current progress: 18 percent done.
SLC7A13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.474582e-01	ci left: 6.111415e-02	ci right 7.094050e-02	k: 659	n:10000
Cons ci ratio: 6.875699e-02	ci left: 2.367933e-01	ci right 2.537553e-01	k: 2452	n:10000
KS ci ratio: 1.297800e-01	ci left: 7.814990e-02	ci right 8.909410e-02	k: 835	n:10000
SLC7A13   10000 perm   2 sec   (5607 perm/sec)   p_kst 8.350000e-02   p_cons 2.452000e-01   p_joint 6.590000e-02

Joint ci ratio: 7.612818e-02	ci left: 1.125763e-01	ci right 1.215353e-01	k: 2340	n:20000
Cons ci ratio: 4.757194e-02	ci left: 2.473831e-01	ci right 2.594887e-01	k: 5068	n:20000
KS ci ratio: 9.222233e-02	ci left: 7.901657e-02	ci right 8.670521e-02	k: 1656	n:20000
SLC7A13   20000 perm   4 sec   (5084 perm/sec)   p_kst 8.280000e-02   p_cons 2.534000e-01   p_joint 1.170000e-01

Outputting figure to mutsig2_images.part000000000161/SLC7A13.6_1429_20000_0.0828_0.2534_0.117.png
                gene_name: SLC7A13
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.083 
        ci_ks_bounds_left: 0.079 
       ci_ks_bounds_right: 0.087 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 19 percent done.
SLC9A10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.296359e-02	ci left: 7.358313e-01	ci right 7.530260e-01	k: 7445	n:10000
Cons ci ratio: 9.988650e-03	ci left: 9.342335e-01	ci right 9.437088e-01	k: 9391	n:10000
KS ci ratio: 3.400154e-02	ci left: 5.608290e-01	ci right 5.803299e-01	k: 5706	n:10000
SLC9A10   10000 perm   2 sec   (5137 perm/sec)   p_kst 5.706000e-01   p_cons 9.391000e-01   p_joint 7.445000e-01

Outputting figure to mutsig2_images.part000000000161/SLC9A10.6_3646_10000_0.5706_0.9391_0.7445.png
                gene_name: SLC9A10
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.75 

Current progress: 21 percent done.
SLC45A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.409676e-02	ci left: 3.348846e-01	ci right 3.536063e-01	k: 3442	n:10000
Cons ci ratio: 7.941687e-02	ci left: 1.880620e-01	ci right 2.037156e-01	k: 1958	n:10000
KS ci ratio: 2.426881e-02	ci left: 7.140138e-01	ci right 7.316562e-01	k: 7229	n:10000
SLC45A2   10000 perm   2 sec   (5917 perm/sec)   p_kst 7.229000e-01   p_cons 1.958000e-01   p_joint 3.442000e-01

Outputting figure to mutsig2_images.part000000000161/SLC45A2.5_1636_10000_0.7229_0.1958_0.3442.png
                gene_name: SLC45A2
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 23 percent done.
SLC46A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.845369e-02	ci left: 3.858982e-01	ci right 4.051627e-01	k: 3955	n:10000
Cons ci ratio: 5.890920e-02	ci left: 2.977686e-01	ci right 3.159440e-01	k: 3068	n:10000
KS ci ratio: 4.734719e-02	ci left: 3.969510e-01	ci right 4.163034e-01	k: 4066	n:10000
SLC46A2   10000 perm   2 sec   (6068 perm/sec)   p_kst 4.066000e-01   p_cons 3.068000e-01   p_joint 3.955000e-01

Outputting figure to mutsig2_images.part000000000161/SLC46A2.5_1444_10000_0.4066_0.3068_0.3955.png
                gene_name: SLC46A2
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 24 percent done.
SLC4A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.900600e-01	ci left: 3.691153e-02	ci right 4.475883e-02	k: 407	n:10000
Cons ci ratio: 2.305278e-01	ci left: 2.485465e-02	ci right 3.142409e-02	k: 280	n:10000
KS ci ratio: 8.383558e-02	ci left: 1.718257e-01	ci right 1.869615e-01	k: 1793	n:10000
SLC4A5   10000 perm   2 sec   (5549 perm/sec)   p_kst 1.793000e-01   p_cons 2.800000e-02   p_joint 4.070000e-02

Joint ci ratio: 1.119101e-01	ci left: 5.455657e-02	ci right 6.107273e-02	k: 1155	n:20000
Cons ci ratio: 1.720426e-01	ci left: 2.311997e-02	ci right 2.751951e-02	k: 505	n:20000
KS ci ratio: 5.922121e-02	ci left: 1.743514e-01	ci right 1.850419e-01	k: 3593	n:20000
SLC4A5   20000 perm   4 sec   (4986 perm/sec)   p_kst 1.796500e-01   p_cons 2.525000e-02   p_joint 5.775000e-02

Joint ci ratio: 1.326147e-01	ci left: 2.642037e-02	ci right 3.020505e-02	k: 848	n:30000
Cons ci ratio: 1.424101e-01	ci left: 2.287663e-02	ci right 2.641625e-02	k: 738	n:30000
KS ci ratio: 4.926449e-02	ci left: 1.699561e-01	ci right 1.785737e-01	k: 5227	n:30000
SLC4A5   30000 perm   6 sec   (4765 perm/sec)   p_kst 1.742333e-01   p_cons 2.460000e-02   p_joint 2.826667e-02

Joint ci ratio: 8.372865e-02	ci left: 4.977075e-02	ci right 5.414459e-02	k: 2077	n:40000
Cons ci ratio: 1.218393e-01	ci left: 2.368610e-02	ci right 2.678335e-02	k: 1008	n:40000
KS ci ratio: 4.265946e-02	ci left: 1.705687e-01	ci right 1.780286e-01	k: 6971	n:40000
SLC4A5   40000 perm   9 sec   (4620 perm/sec)   p_kst 1.742750e-01   p_cons 2.520000e-02   p_joint 5.192500e-02

Joint ci ratio: 8.570372e-02	ci left: 3.843624e-02	ci right 4.189741e-02	k: 2007	n:50000
Cons ci ratio: 1.099759e-01	ci left: 2.341559e-02	ci right 2.615996e-02	k: 1238	n:50000
KS ci ratio: 3.803433e-02	ci left: 1.718769e-01	ci right 1.785608e-01	k: 8760	n:50000
SLC4A5   50000 perm   11 sec   (4507 perm/sec)   p_kst 1.752000e-01   p_cons 2.476000e-02   p_joint 4.014000e-02

Joint ci ratio: 8.263379e-02	ci left: 3.465421e-02	ci right 3.765754e-02	k: 2168	n:60000
Cons ci ratio: 9.973560e-02	ci left: 2.384675e-02	ci right 2.636614e-02	k: 1505	n:60000
KS ci ratio: 3.453581e-02	ci left: 1.737051e-01	ci right 1.798262e-01	k: 10605	n:60000
SLC4A5   60000 perm   14 sec   (4414 perm/sec)   p_kst 1.767500e-01   p_cons 2.508333e-02   p_joint 3.613333e-02

Outputting figure to mutsig2_images.part000000000161/SLC4A5.5_3518_60000_0.17675_0.025083_0.036133.png
                gene_name: SLC4A5
               theta_stop: 0.100 
                    nperm: 60000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.025 
      ci_cons_bounds_left: 0.024 
     ci_cons_bounds_right: 0.026 
                  p_joint: 0.036 
     ci_joint_bounds_left: 0.035 
    ci_joint_bounds_right: 0.038 

Current progress: 26 percent done.
SLC5A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.881241e-02	ci left: 2.984627e-01	ci right 3.166495e-01	k: 3075	n:10000
Cons ci ratio: 1.143814e-01	ci left: 9.905732e-02	ci right 1.111738e-01	k: 1050	n:10000
KS ci ratio: 2.879412e-02	ci left: 6.400560e-01	ci right 6.588569e-01	k: 6495	n:10000
SLC5A1   10000 perm   2 sec   (5800 perm/sec)   p_kst 6.495000e-01   p_cons 1.050000e-01   p_joint 3.075000e-01

Joint ci ratio: 3.522268e-02	ci left: 3.756574e-01	ci right 3.891768e-01	k: 7648	n:20000
Cons ci ratio: 8.648459e-02	ci left: 8.910730e-02	ci right 9.721143e-02	k: 1862	n:20000
KS ci ratio: 2.027649e-02	ci left: 6.447492e-01	ci right 6.580068e-01	k: 13028	n:20000
SLC5A1   20000 perm   4 sec   (5230 perm/sec)   p_kst 6.514000e-01   p_cons 9.310000e-02   p_joint 3.824000e-01

Outputting figure to mutsig2_images.part000000000161/SLC5A1.5_2055_20000_0.6514_0.0931_0.3824.png
                gene_name: SLC5A1
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.093 
      ci_cons_bounds_left: 0.089 
     ci_cons_bounds_right: 0.097 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.39 

Current progress: 27 percent done.
SLC5A12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.659627e-02	ci left: 3.149289e-01	ci right 3.333736e-01	k: 3241	n:10000
Cons ci ratio: 7.919072e-02	ci left: 1.889483e-01	ci right 2.046288e-01	k: 1967	n:10000
KS ci ratio: 5.267779e-02	ci left: 3.469066e-01	ci right 3.657772e-01	k: 3563	n:10000
SLC5A12   10000 perm   2 sec   (5644 perm/sec)   p_kst 3.563000e-01   p_cons 1.967000e-01   p_joint 3.241000e-01

Outputting figure to mutsig2_images.part000000000161/SLC5A12.5_1917_10000_0.3563_0.1967_0.3241.png
                gene_name: SLC5A12
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 29 percent done.
SLC6A13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.895557e-02	ci left: 8.026788e-01	ci right 8.181399e-01	k: 8105	n:10000
Cons ci ratio: 5.324517e-02	ci left: 3.420374e-01	ci right 3.608492e-01	k: 3514	n:10000
KS ci ratio: 2.399040e-02	ci left: 7.186579e-01	ci right 7.362094e-01	k: 7275	n:10000
SLC6A13   10000 perm   2 sec   (5598 perm/sec)   p_kst 7.275000e-01   p_cons 3.514000e-01   p_joint 8.105000e-01

Outputting figure to mutsig2_images.part000000000161/SLC6A13.5_1865_10000_0.7275_0.3514_0.8105.png
                gene_name: SLC6A13
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 31 percent done.
SLC6A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.010923e-01	ci left: 1.240539e-01	ci right 1.373620e-01	k: 1306	n:10000
Cons ci ratio: 2.800798e-02	ci left: 6.526327e-01	ci right 6.712729e-01	k: 6620	n:10000
KS ci ratio: 1.406212e-01	ci left: 6.700893e-02	ci right 7.724202e-02	k: 720	n:10000
SLC6A2   10000 perm   2 sec   (5517 perm/sec)   p_kst 7.200000e-02   p_cons 6.620000e-01   p_joint 1.306000e-01

Joint ci ratio: 6.039211e-02	ci left: 1.687192e-01	ci right 1.792758e-01	k: 3479	n:20000
Cons ci ratio: 1.980097e-02	ci left: 6.554966e-01	ci right 6.686563e-01	k: 13242	n:20000
KS ci ratio: 9.815838e-02	ci left: 7.021377e-02	ci right 7.751070e-02	k: 1476	n:20000
SLC6A2   20000 perm   4 sec   (5007 perm/sec)   p_kst 7.380000e-02   p_cons 6.621000e-01   p_joint 1.739500e-01

Outputting figure to mutsig2_images.part000000000161/SLC6A2.5_2062_20000_0.0738_0.6621_0.17395.png
                gene_name: SLC6A2
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.074 
        ci_ks_bounds_left: 0.070 
       ci_ks_bounds_right: 0.078 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 32 percent done.
SLC7A14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.573964e-02	ci left: 8.542685e-01	ci right 8.679204e-01	k: 8612	n:10000
KS ci ratio: 1.885064e-02	ci left: 8.044048e-01	ci right 8.198129e-01	k: 8122	n:10000
SLC7A14   10000 perm   2 sec   (5645 perm/sec)   p_kst 8.122000e-01   p_cons 8.612000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000161/SLC7A14.5_2344_10000_0.8122_0.8612_1.png
                gene_name: SLC7A14
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 34 percent done.
SLC45A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.839580e-03	ci left: 9.359947e-01	ci right 9.453466e-01	k: 9408	n:10000
KS ci ratio: 6.602499e-03	ci left: 9.691039e-01	ci right 9.756170e-01	k: 9725	n:10000
SLC45A1   10000 perm   2 sec   (5773 perm/sec)   p_kst 9.725000e-01   p_cons 9.408000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000161/SLC45A1.4_2279_10000_0.9725_0.9408_1.png
                gene_name: SLC45A1
               theta_stop: 0.0098 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 35 percent done.
SLC4A1AP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.568707e-02	ci left: 2.034324e-01	ci right 2.195360e-01	k: 2114	n:10000
Cons ci ratio: 2.152702e-02	ci left: 7.599031e-01	ci right 7.765404e-01	k: 7683	n:10000
KS ci ratio: 9.169905e-02	ci left: 1.473694e-01	ci right 1.616325e-01	k: 1544	n:10000
SLC4A1AP   10000 perm   2 sec   (5598 perm/sec)   p_kst 1.544000e-01   p_cons 7.683000e-01   p_joint 2.114000e-01

Outputting figure to mutsig2_images.part000000000161/SLC4A1AP.4_2447_10000_0.1544_0.7683_0.2114.png
                gene_name: SLC4A1AP
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 37 percent done.
SLC4A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.169492e-02	ci left: 2.786422e-01	ci right 2.964817e-01	k: 2875	n:10000
Cons ci ratio: 8.377868e-02	ci left: 1.720224e-01	ci right 1.871647e-01	k: 1795	n:10000
KS ci ratio: 5.391754e-02	ci left: 3.363745e-01	ci right 3.551154e-01	k: 3457	n:10000
SLC4A2   10000 perm   2 sec   (5424 perm/sec)   p_kst 3.457000e-01   p_cons 1.795000e-01   p_joint 2.875000e-01

Outputting figure to mutsig2_images.part000000000161/SLC4A2.4_3814_10000_0.3457_0.1795_0.2875.png
                gene_name: SLC4A2
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 39 percent done.
SLC4A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.489697e-02	ci left: 3.283299e-01	ci right 3.469648e-01	k: 3376	n:10000
Cons ci ratio: 8.738921e-02	ci left: 1.601305e-01	ci right 1.748638e-01	k: 1674	n:10000
KS ci ratio: 4.618013e-02	ci left: 4.090055e-01	ci right 4.284419e-01	k: 4187	n:10000
SLC4A3   10000 perm   2 sec   (5161 perm/sec)   p_kst 4.187000e-01   p_cons 1.674000e-01   p_joint 3.376000e-01

Outputting figure to mutsig2_images.part000000000161/SLC4A3.4_3868_10000_0.4187_0.1674_0.3376.png
                gene_name: SLC4A3
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 40 percent done.
SLC4A8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.891625e-02	ci left: 1.900315e-01	ci right 2.057449e-01	k: 1978	n:10000
Cons ci ratio: 7.245979e-02	ci left: 2.181294e-01	ci right 2.346303e-01	k: 2263	n:10000
KS ci ratio: 8.167954e-02	ci left: 1.794983e-01	ci right 1.948844e-01	k: 1871	n:10000
SLC4A8   10000 perm   2 sec   (5545 perm/sec)   p_kst 1.871000e-01   p_cons 2.263000e-01   p_joint 1.978000e-01

Outputting figure to mutsig2_images.part000000000161/SLC4A8.4_3436_10000_0.1871_0.2263_0.1978.png
                gene_name: SLC4A8
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 42 percent done.
SLC5A7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.847238e-02	ci left: 6.451864e-01	ci right 6.639235e-01	k: 6546	n:10000
Cons ci ratio: 5.651887e-02	ci left: 3.155244e-01	ci right 3.339778e-01	k: 3247	n:10000
KS ci ratio: 3.516050e-02	ci left: 5.442931e-01	ci right 5.638753e-01	k: 5541	n:10000
SLC5A7   10000 perm   2 sec   (5995 perm/sec)   p_kst 5.541000e-01   p_cons 3.247000e-01   p_joint 6.546000e-01

Outputting figure to mutsig2_images.part000000000161/SLC5A7.4_1775_10000_0.5541_0.3247_0.6546.png
                gene_name: SLC5A7
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.66 

Current progress: 44 percent done.
SLC6A19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.926594e-02	ci left: 1.886528e-01	ci right 2.043244e-01	k: 1964	n:10000
Cons ci ratio: 1.255651e-01	ci left: 8.319799e-02	ci right 9.444288e-02	k: 887	n:10000
KS ci ratio: 4.575590e-02	ci left: 4.134900e-01	ci right 4.329547e-01	k: 4232	n:10000
SLC6A19   10000 perm   2 sec   (6223 perm/sec)   p_kst 4.232000e-01   p_cons 8.870000e-02   p_joint 1.964000e-01

Joint ci ratio: 4.956974e-02	ci left: 2.322601e-01	ci right 2.441161e-01	k: 4763	n:20000
Cons ci ratio: 9.129435e-02	ci left: 8.053403e-02	ci right 8.828730e-02	k: 1687	n:20000
KS ci ratio: 3.226463e-02	ci left: 4.177361e-01	ci right 4.314858e-01	k: 8492	n:20000
SLC6A19   20000 perm   4 sec   (5576 perm/sec)   p_kst 4.246000e-01   p_cons 8.435000e-02   p_joint 2.381500e-01

Outputting figure to mutsig2_images.part000000000161/SLC6A19.4_1953_20000_0.4246_0.08435_0.23815.png
                gene_name: SLC6A19
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.084 
      ci_cons_bounds_left: 0.081 
     ci_cons_bounds_right: 0.088 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 45 percent done.
SLC6A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.312912e-02	ci left: 1.434464e-01	ci right 1.575578e-01	k: 1504	n:10000
Cons ci ratio: 1.023114e-01	ci left: 1.214132e-01	ci right 1.346043e-01	k: 1279	n:10000
KS ci ratio: 8.327051e-02	ci left: 1.737925e-01	ci right 1.889935e-01	k: 1813	n:10000
SLC6A4   10000 perm   2 sec   (5859 perm/sec)   p_kst 1.813000e-01   p_cons 1.279000e-01   p_joint 1.504000e-01

Joint ci ratio: 7.123371e-02	ci left: 1.267960e-01	ci right 1.362115e-01	k: 2629	n:20000
Cons ci ratio: 7.207218e-02	ci left: 1.241867e-01	ci right 1.335215e-01	k: 2576	n:20000
KS ci ratio: 5.877315e-02	ci left: 1.765752e-01	ci right 1.873174e-01	k: 3638	n:20000
SLC6A4   20000 perm   4 sec   (5281 perm/sec)   p_kst 1.819000e-01   p_cons 1.288000e-01   p_joint 1.314500e-01

Outputting figure to mutsig2_images.part000000000161/SLC6A4.4_1945_20000_0.1819_0.1288_0.13145.png
                gene_name: SLC6A4
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 47 percent done.
SLC7A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.532304e-01	ci left: 2.043278e-02	ci right 2.644926e-02	k: 233	n:10000
Cons ci ratio: 7.342460e-02	ci left: 2.135905e-01	ci right 2.299719e-01	k: 2217	n:10000
KS ci ratio: 4.258860e-01	ci left: 6.616170e-03	ci right 1.027885e-02	k: 83	n:10000
SLC7A1   10000 perm   2 sec   (5858 perm/sec)   p_kst 8.300000e-03   p_cons 2.217000e-01   p_joint 2.330000e-02

Joint ci ratio: 1.745358e-01	ci left: 2.244966e-02	ci right 2.679005e-02	k: 491	n:20000
Cons ci ratio: 5.197228e-02	ci left: 2.156617e-01	ci right 2.272194e-01	k: 4428	n:20000
KS ci ratio: 3.167357e-01	ci left: 6.397356e-03	ci right 8.849056e-03	k: 151	n:20000
SLC7A1   20000 perm   4 sec   (5275 perm/sec)   p_kst 7.550000e-03   p_cons 2.214000e-01   p_joint 2.455000e-02

Joint ci ratio: 1.984924e-01	ci left: 1.155866e-02	ci right 1.413697e-02	k: 384	n:30000
Cons ci ratio: 4.288542e-02	ci left: 2.131402e-01	ci right 2.225145e-01	k: 6534	n:30000
KS ci ratio: 2.663777e-01	ci left: 6.212330e-03	ci right 8.151619e-03	k: 214	n:30000
SLC7A1   30000 perm   6 sec   (5049 perm/sec)   p_kst 7.133333e-03   p_cons 2.178000e-01   p_joint 1.280000e-02

Joint ci ratio: 1.967616e-01	ci left: 8.857849e-03	ci right 1.081430e-02	k: 392	n:40000
Cons ci ratio: 3.718996e-02	ci left: 2.133163e-01	ci right 2.214248e-01	k: 8694	n:40000
KS ci ratio: 2.266127e-01	ci left: 6.583529e-03	ci right 8.289151e-03	k: 296	n:40000
SLC7A1   40000 perm   8 sec   (4895 perm/sec)   p_kst 7.400000e-03   p_cons 2.173500e-01   p_joint 9.800000e-03

Joint ci ratio: 1.669951e-01	ci left: 9.989194e-03	ci right 1.182825e-02	k: 544	n:50000
Cons ci ratio: 3.319887e-02	ci left: 2.144073e-01	ci right 2.216655e-01	k: 10901	n:50000
KS ci ratio: 1.997951e-01	ci left: 6.876477e-03	ci right 8.421510e-03	k: 381	n:50000
SLC7A1   50000 perm   10 sec   (4790 perm/sec)   p_kst 7.620000e-03   p_cons 2.180200e-01   p_joint 1.088000e-02

Joint ci ratio: 1.669941e-01	ci left: 8.339694e-03	ci right 9.875020e-03	k: 545	n:60000
Cons ci ratio: 3.032172e-02	ci left: 2.145525e-01	ci right 2.211748e-01	k: 13071	n:60000
KS ci ratio: 1.834796e-01	ci left: 6.857035e-03	ci right 8.257897e-03	k: 452	n:60000
SLC7A1   60000 perm   13 sec   (4688 perm/sec)   p_kst 7.533333e-03   p_cons 2.178500e-01   p_joint 9.083333e-03

Joint ci ratio: 1.547293e-01	ci left: 8.382337e-03	ci right 9.801661e-03	k: 635	n:70000
Cons ci ratio: 2.802627e-02	ci left: 2.153581e-01	ci right 2.214938e-01	k: 15289	n:70000
KS ci ratio: 1.691452e-01	ci left: 6.969981e-03	ci right 8.271333e-03	k: 532	n:70000
SLC7A1   70000 perm   15 sec   (4596 perm/sec)   p_kst 7.600000e-03   p_cons 2.184143e-01   p_joint 9.071429e-03

Joint ci ratio: 1.409548e-01	ci left: 8.899705e-03	ci right 1.026122e-02	k: 765	n:80000
Cons ci ratio: 2.621934e-02	ci left: 2.155161e-01	ci right 2.212543e-01	k: 17470	n:80000
KS ci ratio: 1.551874e-01	ci left: 7.298177e-03	ci right 8.537908e-03	k: 632	n:80000
SLC7A1   80000 perm   18 sec   (4508 perm/sec)   p_kst 7.900000e-03   p_cons 2.183750e-01   p_joint 9.562500e-03

Joint ci ratio: 1.202075e-01	ci left: 1.097535e-02	ci right 1.238972e-02	k: 1050	n:90000
Cons ci ratio: 2.473906e-02	ci left: 2.154167e-01	ci right 2.208237e-01	k: 19630	n:90000
KS ci ratio: 1.464288e-01	ci left: 7.321256e-03	ci right 8.488575e-03	k: 710	n:90000
SLC7A1   90000 perm   20 sec   (4421 perm/sec)   p_kst 7.888889e-03   p_cons 2.181111e-01   p_joint 1.166667e-02

Joint ci ratio: 1.259744e-01	ci left: 8.985531e-03	ci right 1.020317e-02	k: 958	n:100000
Cons ci ratio: 2.348002e-02	ci left: 2.154043e-01	ci right 2.205320e-01	k: 21796	n:100000
KS ci ratio: 1.390922e-01	ci left: 7.331641e-03	ci right 8.437190e-03	k: 787	n:100000
SLC7A1   100000 perm   23 sec   (4343 perm/sec)   p_kst 7.870000e-03   p_cons 2.179600e-01   p_joint 9.580000e-03

Joint ci ratio: 8.254313e-02	ci left: 1.926096e-02	ci right 2.092812e-02	k: 2209	n:110000
Cons ci ratio: 2.242842e-02	ci left: 2.149020e-01	ci right 2.197856e-01	k: 23907	n:110000
KS ci ratio: 1.328357e-01	ci left: 7.332542e-03	ci right 8.384564e-03	k: 863	n:110000
SLC7A1   110000 perm   26 sec   (4270 perm/sec)   p_kst 7.845455e-03   p_cons 2.173364e-01   p_joint 2.008182e-02

Joint ci ratio: 7.938106e-02	ci left: 1.912545e-02	ci right 2.071453e-02	k: 2389	n:120000
Cons ci ratio: 2.143130e-02	ci left: 2.156749e-01	ci right 2.203554e-01	k: 26161	n:120000
KS ci ratio: 1.262088e-01	ci left: 7.471430e-03	ci right 8.485898e-03	k: 956	n:120000
SLC7A1   120000 perm   29 sec   (4200 perm/sec)   p_kst 7.966667e-03   p_cons 2.180083e-01   p_joint 1.990833e-02

Joint ci ratio: 7.571917e-02	ci left: 1.943457e-02	ci right 2.097155e-02	k: 2625	n:130000
Cons ci ratio: 2.055491e-02	ci left: 2.163558e-01	ci right 2.208568e-01	k: 28418	n:130000
KS ci ratio: 1.195123e-01	ci left: 7.716924e-03	ci right 8.705202e-03	k: 1066	n:130000
SLC7A1   130000 perm   31 sec   (4130 perm/sec)   p_kst 8.200000e-03   p_cons 2.186000e-01   p_joint 2.019231e-02

Joint ci ratio: 7.576022e-02	ci left: 1.805290e-02	ci right 1.948141e-02	k: 2626	n:140000
Cons ci ratio: 1.981511e-02	ci left: 2.163021e-01	ci right 2.206381e-01	k: 30585	n:140000
KS ci ratio: 1.148668e-01	ci left: 7.775877e-03	ci right 8.730372e-03	k: 1154	n:140000
SLC7A1   140000 perm   34 sec   (4064 perm/sec)   p_kst 8.242857e-03   p_cons 2.184643e-01   p_joint 1.875714e-02

Joint ci ratio: 6.952503e-02	ci left: 2.003129e-02	ci right 2.148065e-02	k: 3112	n:150000
Cons ci ratio: 1.917606e-02	ci left: 2.157931e-01	ci right 2.199778e-01	k: 32682	n:150000
KS ci ratio: 1.100565e-01	ci left: 7.924874e-03	ci right 8.854279e-03	k: 1257	n:150000
SLC7A1   150000 perm   37 sec   (4003 perm/sec)   p_kst 8.380000e-03   p_cons 2.178800e-01   p_joint 2.074667e-02

Joint ci ratio: 6.725049e-02	ci left: 2.009399e-02	ci right 2.149845e-02	k: 3326	n:160000
Cons ci ratio: 1.856539e-02	ci left: 2.158917e-01	ci right 2.199435e-01	k: 34866	n:160000
KS ci ratio: 1.063170e-01	ci left: 7.976862e-03	ci right 8.878587e-03	k: 1347	n:160000
SLC7A1   160000 perm   41 sec   (3942 perm/sec)   p_kst 8.418750e-03   p_cons 2.179125e-01   p_joint 2.078750e-02

Joint ci ratio: 6.527027e-02	ci left: 2.009789e-02	ci right 2.145970e-02	k: 3531	n:170000
Cons ci ratio: 1.802140e-02	ci left: 2.157577e-01	ci right 2.196872e-01	k: 37012	n:170000
KS ci ratio: 1.024328e-01	ci left: 8.103458e-03	ci right 8.984013e-03	k: 1451	n:170000
SLC7A1   170000 perm   44 sec   (3885 perm/sec)   p_kst 8.535294e-03   p_cons 2.177176e-01   p_joint 2.077059e-02

Joint ci ratio: 6.343794e-02	ci left: 2.011284e-02	ci right 2.143599e-02	k: 3738	n:180000
Cons ci ratio: 1.751515e-02	ci left: 2.157842e-01	ci right 2.196026e-01	k: 39184	n:180000
KS ci ratio: 9.978966e-02	ci left: 8.075635e-03	ci right 8.929197e-03	k: 1529	n:180000
SLC7A1   180000 perm   47 sec   (3829 perm/sec)   p_kst 8.494444e-03   p_cons 2.176889e-01   p_joint 2.076667e-02

Outputting figure to mutsig2_images.part000000000161/SLC7A1.4_1934_180000_0.0084944_0.21769_0.020767.png
                gene_name: SLC7A1
               theta_stop: 0.100 
                    nperm: 180000 
                     p_ks: 0.0085 
        ci_ks_bounds_left: 0.0081 
       ci_ks_bounds_right: 0.0089 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.021 
     ci_joint_bounds_left: 0.020 
    ci_joint_bounds_right: 0.021 

Current progress: 48 percent done.
SLC39A6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.667305e-02	ci left: 5.233633e-01	ci right 5.430173e-01	k: 5332	n:10000
Cons ci ratio: 7.731236e-02	ci left: 1.965332e-01	ci right 2.124394e-01	k: 2044	n:10000
KS ci ratio: 1.963134e-02	ci left: 7.915161e-01	ci right 8.073091e-01	k: 7995	n:10000
SLC39A6   10000 perm   2 sec   (6049 perm/sec)   p_kst 7.995000e-01   p_cons 2.044000e-01   p_joint 5.332000e-01

Outputting figure to mutsig2_images.part000000000161/SLC39A6.3_2316_10000_0.7995_0.2044_0.5332.png
                gene_name: SLC39A6
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 50 percent done.
SLC3A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.754627e-02	ci left: 6.600814e-01	ci right 6.786198e-01	k: 6694	n:10000
Cons ci ratio: 4.996592e-02	ci left: 3.713681e-01	ci right 3.905013e-01	k: 3809	n:10000
KS ci ratio: 1.255649e-02	ci left: 9.011385e-01	ci right 9.126232e-01	k: 9070	n:10000
SLC3A1   10000 perm   2 sec   (6162 perm/sec)   p_kst 9.070000e-01   p_cons 3.809000e-01   p_joint 6.694000e-01

Outputting figure to mutsig2_images.part000000000161/SLC3A1.3_2098_10000_0.907_0.3809_0.6694.png
                gene_name: SLC3A1
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 52 percent done.
SLC3A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.101274e-02	ci left: 7.685089e-01	ci right 7.849296e-01	k: 7768	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
SLC3A2   10000 perm   2 sec   (5999 perm/sec)   p_kst 1   p_cons 7.768000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000161/SLC3A2.3_2041_10000_1_0.7768_1.png
                gene_name: SLC3A2
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 53 percent done.
SLC45A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.562496e-02	ci left: 4.148854e-01	ci right 4.343585e-01	k: 4246	n:10000
Cons ci ratio: 1.598226e-02	ci left: 8.504946e-01	ci right 8.642965e-01	k: 8575	n:10000
KS ci ratio: 6.367975e-02	ci left: 2.659681e-01	ci right 2.835633e-01	k: 2747	n:10000
SLC45A4   10000 perm   2 sec   (5982 perm/sec)   p_kst 2.747000e-01   p_cons 8.575000e-01   p_joint 4.246000e-01

Outputting figure to mutsig2_images.part000000000161/SLC45A4.3_2429_10000_0.2747_0.8575_0.4246.png
                gene_name: SLC45A4
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 55 percent done.
SLC4A11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.707555e-02	ci left: 1.975185e-01	ci right 2.134534e-01	k: 2054	n:10000
Cons ci ratio: 1.775008e-01	ci left: 4.235985e-02	ci right 5.070688e-02	k: 464	n:10000
KS ci ratio: 1.942301e-02	ci left: 7.949654e-01	ci right 8.106578e-01	k: 8029	n:10000
SLC4A11   10000 perm   2 sec   (5749 perm/sec)   p_kst 8.029000e-01   p_cons 4.640000e-02   p_joint 2.054000e-01

Joint ci ratio: 6.549509e-02	ci left: 1.469022e-01	ci right 1.568992e-01	k: 3037	n:20000
Cons ci ratio: 1.273938e-01	ci left: 4.231371e-02	ci right 4.811944e-02	k: 903	n:20000
KS ci ratio: 1.369480e-02	ci left: 7.982273e-01	ci right 8.092843e-01	k: 16076	n:20000
SLC4A11   20000 perm   4 sec   (5166 perm/sec)   p_kst 8.038000e-01   p_cons 4.515000e-02   p_joint 1.518500e-01

Joint ci ratio: 5.262836e-02	ci left: 1.519437e-01	ci right 1.601897e-01	k: 4681	n:30000
Cons ci ratio: 1.047476e-01	ci left: 4.225917e-02	ci right 4.696287e-02	k: 1337	n:30000
KS ci ratio: 1.118404e-02	ci left: 7.991930e-01	ci right 8.082148e-01	k: 24112	n:30000
SLC4A11   30000 perm   6 sec   (4949 perm/sec)   p_kst 8.037333e-01   p_cons 4.456667e-02   p_joint 1.560333e-01

Joint ci ratio: 4.473014e-02	ci left: 1.574600e-01	ci right 1.646893e-01	k: 6442	n:40000
Cons ci ratio: 9.079436e-02	ci left: 4.249988e-02	ci right 4.656658e-02	k: 1780	n:40000
KS ci ratio: 9.691260e-03	ci left: 7.996219e-01	ci right 8.074340e-01	k: 32142	n:40000
SLC4A11   40000 perm   8 sec   (4809 perm/sec)   p_kst 8.035500e-01   p_cons 4.450000e-02   p_joint 1.610500e-01

Outputting figure to mutsig2_images.part000000000161/SLC4A11.3_2975_40000_0.80355_0.0445_0.16105.png
                gene_name: SLC4A11
               theta_stop: 0.091 
                    nperm: 40000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.044 
      ci_cons_bounds_left: 0.042 
     ci_cons_bounds_right: 0.047 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.16 

Current progress: 56 percent done.
SLC4A7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.876252e-02	ci left: 6.405589e-01	ci right 6.593536e-01	k: 6500	n:10000
KS ci ratio: 1.739549e-02	ci left: 8.280864e-01	ci right 8.427177e-01	k: 8355	n:10000
SLC4A7   10000 perm   2 sec   (5479 perm/sec)   p_kst 8.355000e-01   p_cons 6.500000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000161/SLC4A7.3_3745_10000_0.8355_0.65_1.png
                gene_name: SLC4A7
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 58 percent done.
SLC5A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.554104e-02	ci left: 4.157825e-01	ci right 4.352610e-01	k: 4255	n:10000
Cons ci ratio: 4.977580e-02	ci left: 3.731590e-01	ci right 3.923094e-01	k: 3827	n:10000
KS ci ratio: 5.461592e-02	ci left: 3.306139e-01	ci right 3.492795e-01	k: 3399	n:10000
SLC5A3   10000 perm   2 sec   (6088 perm/sec)   p_kst 3.399000e-01   p_cons 3.827000e-01   p_joint 4.255000e-01

Outputting figure to mutsig2_images.part000000000161/SLC5A3.3_2161_10000_0.3399_0.3827_0.4255.png
                gene_name: SLC5A3
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 60 percent done.
SLC5A9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.455838e-02	ci left: 4.264501e-01	ci right 4.459871e-01	k: 4362	n:10000
Cons ci ratio: 1.277887e-01	ci left: 8.047904e-02	ci right 9.156351e-02	k: 859	n:10000
KS ci ratio: 2.409325e-02	ci left: 7.169415e-01	ci right 7.345268e-01	k: 7258	n:10000
SLC5A9   10000 perm   2 sec   (6081 perm/sec)   p_kst 7.258000e-01   p_cons 8.590000e-02   p_joint 4.362000e-01

Joint ci ratio: 2.802305e-02	ci left: 4.875471e-01	ci right 5.014545e-01	k: 9890	n:20000
Cons ci ratio: 8.953869e-02	ci left: 8.352110e-02	ci right 9.139931e-02	k: 1748	n:20000
KS ci ratio: 1.691916e-02	ci left: 7.223289e-01	ci right 7.347046e-01	k: 14571	n:20000
SLC5A9   20000 perm   4 sec   (5454 perm/sec)   p_kst 7.285500e-01   p_cons 8.740000e-02   p_joint 4.945000e-01

Outputting figure to mutsig2_images.part000000000161/SLC5A9.3_2181_20000_0.72855_0.0874_0.4945.png
                gene_name: SLC5A9
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.087 
      ci_cons_bounds_left: 0.084 
     ci_cons_bounds_right: 0.091 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.50 

Current progress: 61 percent done.
SLC6A12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.528874e-02	ci left: 5.424899e-01	ci right 5.620796e-01	k: 5523	n:10000
KS ci ratio: 1.130334e-02	ci left: 9.179100e-01	ci right 9.284419e-01	k: 9233	n:10000
SLC6A12   10000 perm   2 sec   (6233 perm/sec)   p_kst 9.233000e-01   p_cons 5.523000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000161/SLC6A12.3_1901_10000_0.9233_0.5523_1.png
                gene_name: SLC6A12
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 63 percent done.
SLC6A16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.913003e-02	ci left: 6.347256e-01	ci right 6.535903e-01	k: 6442	n:10000
Cons ci ratio: 1.842321e-02	ci left: 8.114128e-01	ci right 8.266008e-01	k: 8191	n:10000
KS ci ratio: 4.766254e-02	ci left: 3.937641e-01	ci right 4.130922e-01	k: 4034	n:10000
SLC6A16   10000 perm   2 sec   (6088 perm/sec)   p_kst 4.034000e-01   p_cons 8.191000e-01   p_joint 6.442000e-01

Outputting figure to mutsig2_images.part000000000161/SLC6A16.3_2255_10000_0.4034_0.8191_0.6442.png
                gene_name: SLC6A16
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 65 percent done.
SLC7A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.398907e-01	ci left: 6.768608e-02	ci right 7.796444e-02	k: 727	n:10000
Cons ci ratio: 1.922817e-01	ci left: 3.605305e-02	ci right 4.381788e-02	k: 398	n:10000
KS ci ratio: 1.533912e-01	ci left: 5.658036e-02	ci right 6.607718e-02	k: 612	n:10000
SLC7A2   10000 perm   2 sec   (6037 perm/sec)   p_kst 6.120000e-02   p_cons 3.980000e-02   p_joint 7.270000e-02

Joint ci ratio: 1.098083e-01	ci left: 5.660168e-02	ci right 6.322698e-02	k: 1197	n:20000
Cons ci ratio: 1.343958e-01	ci left: 3.805187e-02	ci right 4.358264e-02	k: 815	n:20000
KS ci ratio: 1.106458e-01	ci left: 5.577376e-02	ci right 6.235516e-02	k: 1180	n:20000
SLC7A2   20000 perm   4 sec   (5422 perm/sec)   p_kst 5.900000e-02   p_cons 4.075000e-02   p_joint 5.985000e-02

Joint ci ratio: 1.106328e-01	ci left: 3.794031e-02	ci right 4.241596e-02	k: 1204	n:30000
Cons ci ratio: 1.097345e-01	ci left: 3.855687e-02	ci right 4.306594e-02	k: 1223	n:30000
KS ci ratio: 8.963224e-02	ci left: 5.724078e-02	ci right 6.264483e-02	k: 1797	n:30000
SLC7A2   30000 perm   6 sec   (5173 perm/sec)   p_kst 5.990000e-02   p_cons 4.076667e-02   p_joint 4.013333e-02

Joint ci ratio: 8.389914e-02	ci left: 4.957473e-02	ci right 5.394064e-02	k: 2069	n:40000
Cons ci ratio: 9.586298e-02	ci left: 3.819829e-02	ci right 4.206884e-02	k: 1604	n:40000
KS ci ratio: 7.792418e-02	ci left: 5.717677e-02	ci right 6.183743e-02	k: 2379	n:40000
SLC7A2   40000 perm   8 sec   (4989 perm/sec)   p_kst 5.947500e-02   p_cons 4.010000e-02   p_joint 5.172500e-02

Outputting figure to mutsig2_images.part000000000161/SLC7A2.3_2286_40000_0.059475_0.0401_0.051725.png
                gene_name: SLC7A2
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.059 
        ci_ks_bounds_left: 0.057 
       ci_ks_bounds_right: 0.062 
                   p_cons: 0.040 
      ci_cons_bounds_left: 0.038 
     ci_cons_bounds_right: 0.042 
                  p_joint: 0.052 
     ci_joint_bounds_left: 0.050 
    ci_joint_bounds_right: 0.054 

Current progress: 66 percent done.
SLC7A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.750290e-02	ci left: 8.263569e-01	ci right 8.410482e-01	k: 8338	n:10000
KS ci ratio: 1.471055e-02	ci left: 8.699939e-01	ci right 8.829859e-01	k: 8766	n:10000
SLC7A3   10000 perm   2 sec   (6272 perm/sec)   p_kst 8.766000e-01   p_cons 8.338000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000161/SLC7A3.3_1904_10000_0.8766_0.8338_1.png
                gene_name: SLC7A3
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
SLC7A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.092792e-02	ci left: 7.699268e-01	ci right 7.863109e-01	k: 7782	n:10000
Cons ci ratio: 4.135393e-02	ci left: 4.633733e-01	ci right 4.830423e-01	k: 4732	n:10000
KS ci ratio: 3.579820e-02	ci left: 5.353783e-01	ci right 5.549953e-01	k: 5452	n:10000
SLC7A4   10000 perm   2 sec   (6615 perm/sec)   p_kst 5.452000e-01   p_cons 4.732000e-01   p_joint 7.782000e-01

Outputting figure to mutsig2_images.part000000000161/SLC7A4.3_1924_10000_0.5452_0.4732_0.7782.png
                gene_name: SLC7A4
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 69 percent done.
SLC7A6OS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.258860e-01	ci left: 6.616170e-03	ci right 1.027885e-02	k: 83	n:10000
Cons ci ratio: 1.335644e-01	ci left: 7.398022e-02	ci right 8.466637e-02	k: 792	n:10000
KS ci ratio: 3.751414e-01	ci left: 8.776964e-03	ci right 1.291541e-02	k: 107	n:10000
SLC7A6OS   10000 perm   2 sec   (6191 perm/sec)   p_kst 1.070000e-02   p_cons 7.920000e-02   p_joint 8.300000e-03

Joint ci ratio: 2.212663e-01	ci left: 1.373916e-02	ci right 1.720379e-02	k: 308	n:20000
Cons ci ratio: 9.496748e-02	ci left: 7.476008e-02	ci right 8.226301e-02	k: 1569	n:20000
KS ci ratio: 2.793383e-01	ci left: 8.388326e-03	ci right 1.115700e-02	k: 194	n:20000
SLC7A6OS   20000 perm   4 sec   (5691 perm/sec)   p_kst 9.700000e-03   p_cons 7.845000e-02   p_joint 1.540000e-02

Joint ci ratio: 2.888848e-01	ci left: 5.219404e-03	ci right 7.011603e-03	k: 182	n:30000
Cons ci ratio: 7.826475e-02	ci left: 7.413862e-02	ci right 8.021024e-02	k: 2314	n:30000
KS ci ratio: 2.298730e-01	ci left: 8.496207e-03	ci right 1.073364e-02	k: 287	n:30000
SLC7A6OS   30000 perm   5 sec   (5460 perm/sec)   p_kst 9.566667e-03   p_cons 7.713333e-02   p_joint 6.066667e-03

Joint ci ratio: 3.152700e-01	ci left: 3.243834e-03	ci right 4.479913e-03	k: 153	n:40000
Cons ci ratio: 6.739772e-02	ci left: 7.534094e-02	ci right 8.062052e-02	k: 3118	n:40000
KS ci ratio: 1.985553e-01	ci left: 8.691436e-03	ci right 1.063075e-02	k: 385	n:40000
SLC7A6OS   40000 perm   8 sec   (5150 perm/sec)   p_kst 9.625000e-03   p_cons 7.795000e-02   p_joint 3.825000e-03

Joint ci ratio: 1.967052e-01	ci left: 7.104644e-03	ci right 8.673300e-03	k: 393	n:50000
Cons ci ratio: 5.987329e-02	ci left: 7.659099e-02	ci right 8.133803e-02	k: 3947	n:50000
KS ci ratio: 1.790038e-01	ci left: 8.649199e-03	ci right 1.036847e-02	k: 474	n:50000
SLC7A6OS   50000 perm   10 sec   (5056 perm/sec)   p_kst 9.480000e-03   p_cons 7.894000e-02   p_joint 7.860000e-03

Joint ci ratio: 2.020640e-01	ci left: 5.603390e-03	ci right 6.878412e-03	k: 373	n:60000
Cons ci ratio: 5.461662e-02	ci left: 7.690312e-02	ci right 8.123770e-02	k: 4743	n:60000
KS ci ratio: 1.632631e-01	ci left: 8.739285e-03	ci right 1.030871e-02	k: 570	n:60000
SLC7A6OS   60000 perm   12 sec   (4964 perm/sec)   p_kst 9.500000e-03   p_cons 7.905000e-02   p_joint 6.216667e-03

Joint ci ratio: 2.149511e-01	ci left: 4.220328e-03	ci right 5.249959e-03	k: 330	n:70000
Cons ci ratio: 5.060825e-02	ci left: 7.694152e-02	ci right 8.095061e-02	k: 5525	n:70000
KS ci ratio: 1.498148e-01	ci left: 8.959673e-03	ci right 1.042426e-02	k: 677	n:70000
SLC7A6OS   70000 perm   14 sec   (4875 perm/sec)   p_kst 9.671429e-03   p_cons 7.892857e-02   p_joint 4.714286e-03

Joint ci ratio: 2.262740e-01	ci left: 3.314694e-03	ci right 4.171914e-03	k: 298	n:80000
Cons ci ratio: 4.759973e-02	ci left: 7.628677e-02	ci right 8.001889e-02	k: 6251	n:80000
KS ci ratio: 1.412343e-01	ci left: 8.863518e-03	ci right 1.022241e-02	k: 762	n:80000
SLC7A6OS   80000 perm   17 sec   (4787 perm/sec)   p_kst 9.525000e-03   p_cons 7.813750e-02   p_joint 3.725000e-03

Joint ci ratio: 2.150649e-01	ci left: 3.282302e-03	ci right 4.083545e-03	k: 330	n:90000
Cons ci ratio: 4.490345e-02	ci left: 7.631103e-02	ci right 7.982734e-02	k: 7025	n:90000
KS ci ratio: 1.338177e-01	ci left: 8.812088e-03	ci right 1.008650e-02	k: 849	n:90000
SLC7A6OS   90000 perm   19 sec   (4653 perm/sec)   p_kst 9.433333e-03   p_cons 7.805556e-02   p_joint 3.666667e-03

Joint ci ratio: 2.082709e-01	ci left: 3.162390e-03	ci right 3.906864e-03	k: 352	n:100000
Cons ci ratio: 4.251555e-02	ci left: 7.668182e-02	ci right 8.002268e-02	k: 7834	n:100000
KS ci ratio: 1.275275e-01	ci left: 8.762760e-03	ci right 9.965956e-03	k: 935	n:100000
SLC7A6OS   100000 perm   22 sec   (4579 perm/sec)   p_kst 9.350000e-03   p_cons 7.834000e-02   p_joint 3.520000e-03

Joint ci ratio: 2.028977e-01	ci left: 3.038716e-03	ci right 3.733329e-03	k: 371	n:110000
Cons ci ratio: 4.051278e-02	ci left: 7.684513e-02	ci right 8.003169e-02	k: 8627	n:110000
KS ci ratio: 1.227167e-01	ci left: 8.626588e-03	ci right 9.763152e-03	k: 1010	n:110000
SLC7A6OS   110000 perm   24 sec   (4507 perm/sec)   p_kst 9.181818e-03   p_cons 7.842727e-02   p_joint 3.372727e-03

Joint ci ratio: 1.319597e-01	ci left: 6.818064e-03	ci right 7.789308e-03	k: 875	n:120000
Cons ci ratio: 3.872639e-02	ci left: 7.714122e-02	ci right 8.019585e-02	k: 9439	n:120000
KS ci ratio: 1.169005e-01	ci left: 8.740354e-03	ci right 9.833558e-03	k: 1113	n:120000
SLC7A6OS   120000 perm   27 sec   (4434 perm/sec)   p_kst 9.275000e-03   p_cons 7.865833e-02   p_joint 7.291667e-03

Joint ci ratio: 1.426285e-01	ci left: 5.364742e-03	ci right 6.195998e-03	k: 750	n:130000
Cons ci ratio: 3.721041e-02	ci left: 7.718843e-02	ci right 8.012270e-02	k: 10224	n:130000
KS ci ratio: 1.128267e-01	ci left: 8.680652e-03	ci right 9.726032e-03	k: 1195	n:130000
SLC7A6OS   130000 perm   30 sec   (4342 perm/sec)   p_kst 9.192308e-03   p_cons 7.864615e-02   p_joint 5.769231e-03

Joint ci ratio: 1.375918e-01	ci left: 5.367527e-03	ci right 6.167437e-03	k: 806	n:140000
Cons ci ratio: 3.595358e-02	ci left: 7.685546e-02	ci right 7.967633e-02	k: 10956	n:140000
KS ci ratio: 1.085525e-01	ci left: 8.727349e-03	ci right 9.735991e-03	k: 1291	n:140000
SLC7A6OS   140000 perm   33 sec   (4284 perm/sec)   p_kst 9.221429e-03   p_cons 7.825714e-02   p_joint 5.757143e-03

Joint ci ratio: 1.160691e-01	ci left: 7.108438e-03	ci right 7.990757e-03	k: 1131	n:150000
Cons ci ratio: 3.469223e-02	ci left: 7.707760e-02	ci right 7.980539e-02	k: 11765	n:150000
KS ci ratio: 1.051900e-01	ci left: 8.690549e-03	ci right 9.661899e-03	k: 1375	n:150000
SLC7A6OS   150000 perm   36 sec   (4225 perm/sec)   p_kst 9.166667e-03   p_cons 7.843333e-02   p_joint 7.540000e-03

Joint ci ratio: 1.129249e-01	ci left: 7.052694e-03	ci right 7.902800e-03	k: 1195	n:160000
Cons ci ratio: 3.352313e-02	ci left: 7.740993e-02	ci right 8.005536e-02	k: 12596	n:160000
KS ci ratio: 1.014575e-01	ci left: 8.774525e-03	ci right 9.718387e-03	k: 1478	n:160000
SLC7A6OS   160000 perm   38 sec   (4166 perm/sec)   p_kst 9.237500e-03   p_cons 7.872500e-02   p_joint 7.468750e-03

Joint ci ratio: 1.149512e-01	ci left: 6.403402e-03	ci right 7.190030e-03	k: 1154	n:170000
Cons ci ratio: 3.254375e-02	ci left: 7.735418e-02	ci right 7.991903e-02	k: 13367	n:170000
KS ci ratio: 9.860055e-02	ci left: 8.757334e-03	ci right 9.671285e-03	k: 1565	n:170000
SLC7A6OS   170000 perm   41 sec   (4109 perm/sec)   p_kst 9.205882e-03   p_cons 7.862941e-02   p_joint 6.788235e-03

Joint ci ratio: 1.124997e-01	ci left: 6.322916e-03	ci right 7.081992e-03	k: 1205	n:180000
Cons ci ratio: 3.163698e-02	ci left: 7.734425e-02	ci right 7.983601e-02	k: 14145	n:180000
KS ci ratio: 9.632563e-02	ci left: 8.677308e-03	ci right 9.560832e-03	k: 1640	n:180000
SLC7A6OS   180000 perm   44 sec   (4048 perm/sec)   p_kst 9.111111e-03   p_cons 7.858333e-02   p_joint 6.694444e-03

Joint ci ratio: 1.295633e-01	ci left: 4.483981e-03	ci right 5.110222e-03	k: 910	n:190000
Cons ci ratio: 3.078634e-02	ci left: 7.740942e-02	ci right 7.983503e-02	k: 14937	n:190000
KS ci ratio: 9.387050e-02	ci left: 8.667610e-03	ci right 9.526415e-03	k: 1727	n:190000
SLC7A6OS   190000 perm   48 sec   (3991 perm/sec)   p_kst 9.089474e-03   p_cons 7.861579e-02   p_joint 4.789474e-03

Joint ci ratio: 1.266113e-01	ci left: 4.467891e-03	ci right 5.076600e-03	k: 953	n:200000
Cons ci ratio: 2.996259e-02	ci left: 7.765261e-02	ci right 8.001961e-02	k: 15766	n:200000
KS ci ratio: 9.108890e-02	ci left: 8.756875e-03	ci right 9.597443e-03	k: 1834	n:200000
SLC7A6OS   200000 perm   51 sec   (3932 perm/sec)   p_kst 9.170000e-03   p_cons 7.883000e-02   p_joint 4.765000e-03

Joint ci ratio: 1.327012e-01	ci left: 3.863413e-03	ci right 4.417079e-03	k: 868	n:210000
Cons ci ratio: 2.922742e-02	ci left: 7.774570e-02	ci right 8.005641e-02	k: 16568	n:210000
KS ci ratio: 8.900447e-02	ci left: 8.744835e-03	ci right 9.564038e-03	k: 1921	n:210000
SLC7A6OS   210000 perm   54 sec   (3879 perm/sec)   p_kst 9.147619e-03   p_cons 7.889524e-02   p_joint 4.133333e-03

Joint ci ratio: 1.367204e-01	ci left: 3.468139e-03	ci right 3.981436e-03	k: 818	n:220000
Cons ci ratio: 2.859122e-02	ci left: 7.759164e-02	ci right 7.984674e-02	k: 17317	n:220000
KS ci ratio: 8.712255e-02	ci left: 8.720746e-03	ci right 9.519540e-03	k: 2005	n:220000
SLC7A6OS   220000 perm   57 sec   (3828 perm/sec)   p_kst 9.113636e-03   p_cons 7.871364e-02   p_joint 3.718182e-03

Joint ci ratio: 9.491883e-02	ci left: 7.011333e-03	ci right 7.714211e-03	k: 1692	n:230000
Cons ci ratio: 2.802091e-02	ci left: 7.731757e-02	ci right 7.951916e-02	k: 18035	n:230000
KS ci ratio: 8.521127e-02	ci left: 8.728711e-03	ci right 9.509822e-03	k: 2096	n:230000
SLC7A6OS   230000 perm   61 sec   (3762 perm/sec)   p_kst 9.113043e-03   p_cons 7.841304e-02   p_joint 7.356522e-03

Outputting figure to mutsig2_images.part000000000161/SLC7A6OS.3_950_230000_0.009113_0.078413_0.0073565.png
                gene_name: SLC7A6OS
               theta_stop: 0.095 
                    nperm: 230000 
                     p_ks: 0.0091 
        ci_ks_bounds_left: 0.0087 
       ci_ks_bounds_right: 0.0095 
                   p_cons: 0.078 
      ci_cons_bounds_left: 0.077 
     ci_cons_bounds_right: 0.080 
                  p_joint: 0.0074 
     ci_joint_bounds_left: 0.0070 
    ci_joint_bounds_right: 0.0077 

Current progress: 71 percent done.
SLC8A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.168825e-01	ci left: 9.516088e-02	ci right 1.070726e-01	k: 1010	n:10000
KS ci ratio: 1.594303e-02	ci left: 8.511065e-01	ci right 8.648842e-01	k: 8581	n:10000
SLC8A3   10000 perm   2 sec   (5749 perm/sec)   p_kst 8.581000e-01   p_cons 1.010000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 8.421077e-02	ci left: 9.361882e-02	ci right 1.018985e-01	k: 1954	n:20000
KS ci ratio: 1.140417e-02	ci left: 8.502971e-01	ci right 8.600994e-01	k: 17105	n:20000
SLC8A3   20000 perm   4 sec   (5101 perm/sec)   p_kst 8.552500e-01   p_cons 9.770000e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000161/SLC8A3.3_2923_20000_0.85525_0.0977_1.png
                gene_name: SLC8A3
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.098 
      ci_cons_bounds_left: 0.094 
     ci_cons_bounds_right: 0.10 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
SLC9A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.261923e-02	ci left: 4.483979e-01	ci right 4.680265e-01	k: 4582	n:10000
KS ci ratio: 8.487256e-03	ci left: 9.510652e-01	ci right 9.592670e-01	k: 9553	n:10000
SLC9A1   10000 perm   2 sec   (6046 perm/sec)   p_kst 9.553000e-01   p_cons 4.582000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000161/SLC9A1.3_2496_10000_0.9553_0.4582_1.png
                gene_name: SLC9A1
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 74 percent done.
SLC44A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.504170e-02	ci left: 4.211655e-01	ci right 4.406747e-01	k: 4309	n:10000
Cons ci ratio: 6.152973e-02	ci left: 2.797318e-01	ci right 2.975915e-01	k: 2886	n:10000
KS ci ratio: 9.367929e-02	ci left: 1.419757e-01	ci right 1.560294e-01	k: 1489	n:10000
SLC44A1   10000 perm   2 sec   (6427 perm/sec)   p_kst 1.489000e-01   p_cons 2.886000e-01   p_joint 4.309000e-01

Outputting figure to mutsig2_images.part000000000161/SLC44A1.2_2038_10000_0.1489_0.2886_0.4309.png
                gene_name: SLC44A1
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 76 percent done.
SLC44A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.052552e-01	ci left: 1.153530e-01	ci right 1.282683e-01	k: 1217	n:10000
KS ci ratio: 4.245605e-03	ci left: 9.862119e-01	ci right 9.904965e-01	k: 9885	n:10000
SLC44A2   10000 perm   2 sec   (6194 perm/sec)   p_kst 9.885000e-01   p_cons 1.217000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 7.529283e-02	ci left: 1.148383e-01	ci right 1.238727e-01	k: 2386	n:20000
KS ci ratio: 3.124502e-03	ci left: 9.858623e-01	ci right 9.889936e-01	k: 19750	n:20000
SLC44A2   20000 perm   4 sec   (5495 perm/sec)   p_kst 9.875000e-01   p_cons 1.193000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000161/SLC44A2.2_2244_20000_0.9875_0.1193_1.png
                gene_name: SLC44A2
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
SLC44A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.257135e-02	ci left: 9.009330e-01	ci right 9.124288e-01	k: 9068	n:10000
Cons ci ratio: 2.851016e-02	ci left: 6.445828e-01	ci right 6.633275e-01	k: 6540	n:10000
KS ci ratio: 2.258349e-02	ci left: 7.421999e-01	ci right 7.592538e-01	k: 7508	n:10000
SLC44A4   10000 perm   2 sec   (6084 perm/sec)   p_kst 7.508000e-01   p_cons 6.540000e-01   p_joint 9.068000e-01

Outputting figure to mutsig2_images.part000000000161/SLC44A4.2_2217_10000_0.7508_0.654_0.9068.png
                gene_name: SLC44A4
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 79 percent done.
SLC46A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.204951e-01	ci left: 8.990526e-02	ci right 1.015315e-01	k: 956	n:10000
Cons ci ratio: 9.969303e-02	ci left: 1.271849e-01	ci right 1.406292e-01	k: 1338	n:10000
KS ci ratio: 4.798081e-02	ci left: 3.905776e-01	ci right 4.098806e-01	k: 4002	n:10000
SLC46A1   10000 perm   1 sec   (6755 perm/sec)   p_kst 4.002000e-01   p_cons 1.338000e-01   p_joint 9.560000e-02

Joint ci ratio: 4.366240e-02	ci left: 2.809357e-01	ci right 2.935262e-01	k: 5744	n:20000
Cons ci ratio: 7.098530e-02	ci left: 1.275838e-01	ci right 1.370234e-01	k: 2645	n:20000
KS ci ratio: 3.349309e-02	ci left: 3.996319e-01	ci right 4.132953e-01	k: 8129	n:20000
SLC46A1   20000 perm   3 sec   (5994 perm/sec)   p_kst 4.064500e-01   p_cons 1.322500e-01   p_joint 2.872000e-01

Outputting figure to mutsig2_images.part000000000161/SLC46A1.2_1401_20000_0.40645_0.13225_0.2872.png
                gene_name: SLC46A1
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 81 percent done.
SLC5A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.155646e-02	ci left: 9.146125e-01	ci right 9.253413e-01	k: 9201	n:10000
KS ci ratio: 9.979928e-03	ci left: 9.343371e-01	ci right 9.438051e-01	k: 9392	n:10000
SLC5A4   10000 perm   2 sec   (6375 perm/sec)   p_kst 9.392000e-01   p_cons 9.201000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000161/SLC5A4.2_2040_10000_0.9392_0.9201_1.png
                gene_name: SLC5A4
               theta_stop: 0.012 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
SLC5A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.294549e-02	ci left: 7.361346e-01	ci right 7.533227e-01	k: 7448	n:10000
KS ci ratio: 3.813473e-02	ci left: 5.038511e-01	ci right 5.235409e-01	k: 5137	n:10000
SLC5A5   10000 perm   2 sec   (6357 perm/sec)   p_kst 5.137000e-01   p_cons 7.448000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000161/SLC5A5.2_1992_10000_0.5137_0.7448_1.png
                gene_name: SLC5A5
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
SLC5A6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.440314e-02	ci left: 8.745949e-01	ci right 8.873822e-01	k: 8811	n:10000
Cons ci ratio: 2.293946e-02	ci left: 7.362356e-01	ci right 7.534215e-01	k: 7449	n:10000
KS ci ratio: 1.931867e-02	ci left: 7.966903e-01	ci right 8.123319e-01	k: 8046	n:10000
SLC5A6   10000 perm   2 sec   (6581 perm/sec)   p_kst 8.046000e-01   p_cons 7.449000e-01   p_joint 8.811000e-01

Outputting figure to mutsig2_images.part000000000161/SLC5A6.2_1968_10000_0.8046_0.7449_0.8811.png
                gene_name: SLC5A6
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.89 

Current progress: 85 percent done.
SLC6A11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.198219e-02	ci left: 2.767603e-01	ci right 2.945647e-01	k: 2856	n:10000
Cons ci ratio: 4.633221e-02	ci left: 4.074111e-01	ci right 4.268372e-01	k: 4171	n:10000
KS ci ratio: 1.213381e-01	ci left: 8.873809e-02	ci right 1.002994e-01	k: 944	n:10000
SLC6A11   10000 perm   2 sec   (6508 perm/sec)   p_kst 9.440000e-02   p_cons 4.171000e-01   p_joint 2.856000e-01

Joint ci ratio: 4.585048e-02	ci left: 2.614736e-01	ci right 2.737940e-01	k: 5352	n:20000
Cons ci ratio: 3.243689e-02	ci left: 4.151421e-01	ci right 4.288806e-01	k: 8440	n:20000
KS ci ratio: 8.522918e-02	ci left: 9.155886e-02	ci right 9.975913e-02	k: 1912	n:20000
SLC6A11   20000 perm   3 sec   (5789 perm/sec)   p_kst 9.560000e-02   p_cons 4.220000e-01   p_joint 2.676000e-01

Outputting figure to mutsig2_images.part000000000161/SLC6A11.2_1955_20000_0.0956_0.422_0.2676.png
                gene_name: SLC6A11
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.096 
        ci_ks_bounds_left: 0.092 
       ci_ks_bounds_right: 0.100 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 87 percent done.
SLC6A14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.104511e-02	ci left: 6.048784e-01	ci right 6.240549e-01	k: 6145	n:10000
Cons ci ratio: 4.582155e-02	ci left: 4.127924e-01	ci right 4.322528e-01	k: 4225	n:10000
KS ci ratio: 6.994737e-02	ci left: 2.305695e-01	ci right 2.473828e-01	k: 2389	n:10000
SLC6A14   10000 perm   2 sec   (6409 perm/sec)   p_kst 2.389000e-01   p_cons 4.225000e-01   p_joint 6.145000e-01

Outputting figure to mutsig2_images.part000000000161/SLC6A14.2_1985_10000_0.2389_0.4225_0.6145.png
                gene_name: SLC6A14
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 89 percent done.
SLC6A18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.226054e-02	ci left: 4.525901e-01	ci right 4.722318e-01	k: 4624	n:10000
Cons ci ratio: 5.646737e-02	ci left: 3.159213e-01	ci right 3.343806e-01	k: 3251	n:10000
KS ci ratio: 5.726153e-02	ci left: 3.098686e-01	ci right 3.282369e-01	k: 3190	n:10000
SLC6A18   10000 perm   2 sec   (6337 perm/sec)   p_kst 3.190000e-01   p_cons 3.251000e-01   p_joint 4.624000e-01

Outputting figure to mutsig2_images.part000000000161/SLC6A18.2_1935_10000_0.319_0.3251_0.4624.png
                gene_name: SLC6A18
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 90 percent done.
SLC6A6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.331969e-02	ci left: 7.298693e-01	ci right 7.471916e-01	k: 7386	n:10000
Cons ci ratio: 1.317906e-02	ci left: 8.924146e-01	ci right 9.043522e-01	k: 8985	n:10000
KS ci ratio: 3.610965e-02	ci left: 5.310723e-01	ci right 5.507039e-01	k: 5409	n:10000
SLC6A6   10000 perm   2 sec   (6646 perm/sec)   p_kst 5.409000e-01   p_cons 8.985000e-01   p_joint 7.386000e-01

Outputting figure to mutsig2_images.part000000000161/SLC6A6.2_1919_10000_0.5409_0.8985_0.7386.png
                gene_name: SLC6A6
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 92 percent done.
SLC6A7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.331969e-02	ci left: 7.298693e-01	ci right 7.471916e-01	k: 7386	n:10000
Cons ci ratio: 1.726883e-02	ci left: 8.301215e-01	ci right 8.446814e-01	k: 8375	n:10000
KS ci ratio: 9.655248e-02	ci left: 1.346260e-01	ci right 1.483836e-01	k: 1414	n:10000
SLC6A7   10000 perm   2 sec   (6368 perm/sec)   p_kst 1.414000e-01   p_cons 8.375000e-01   p_joint 7.386000e-01

Outputting figure to mutsig2_images.part000000000161/SLC6A7.2_1967_10000_0.1414_0.8375_0.7386.png
                gene_name: SLC6A7
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 94 percent done.
SLC6A8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.649036e-02	ci left: 1.999823e-01	ci right 2.159882e-01	k: 2079	n:10000
Cons ci ratio: 2.749029e-02	ci left: 6.609875e-01	ci right 6.795132e-01	k: 6703	n:10000
KS ci ratio: 2.284450e-01	ci left: 2.532660e-02	ci right 3.195180e-02	k: 285	n:10000
SLC6A8   10000 perm   2 sec   (6354 perm/sec)   p_kst 2.850000e-02   p_cons 6.703000e-01   p_joint 2.079000e-01

Joint ci ratio: 6.127879e-02	ci left: 1.646198e-01	ci right 1.750764e-01	k: 3396	n:20000
Cons ci ratio: 1.930091e-02	ci left: 6.669009e-01	ci right 6.799486e-01	k: 13469	n:20000
KS ci ratio: 1.581552e-01	ci left: 2.743895e-02	ci right 3.219905e-02	k: 595	n:20000
SLC6A8   20000 perm   4 sec   (5666 perm/sec)   p_kst 2.975000e-02   p_cons 6.734500e-01   p_joint 1.698000e-01

Joint ci ratio: 5.459016e-02	ci left: 1.426481e-01	ci right 1.506871e-01	k: 4399	n:30000
Cons ci ratio: 1.573961e-02	ci left: 6.686624e-01	ci right 6.793039e-01	k: 20220	n:30000
KS ci ratio: 1.281039e-01	ci left: 2.832467e-02	ci right 3.223367e-02	k: 907	n:30000
SLC6A8   30000 perm   6 sec   (5394 perm/sec)   p_kst 3.023333e-02   p_cons 6.740000e-01   p_joint 1.466333e-01

Joint ci ratio: 4.343111e-02	ci left: 1.655126e-01	ci right 1.728855e-01	k: 6767	n:40000
Cons ci ratio: 1.368142e-02	ci left: 6.677506e-01	ci right 6.769744e-01	k: 26895	n:40000
KS ci ratio: 1.110679e-01	ci left: 2.852023e-02	ci right 3.189842e-02	k: 1207	n:40000
SLC6A8   40000 perm   8 sec   (5219 perm/sec)   p_kst 3.017500e-02   p_cons 6.723750e-01   p_joint 1.691750e-01

Joint ci ratio: 3.859643e-02	ci left: 1.677090e-01	ci right 1.743293e-01	k: 8550	n:50000
Cons ci ratio: 1.222971e-02	ci left: 6.685070e-01	ci right 6.767530e-01	k: 33632	n:50000
KS ci ratio: 1.000275e-01	ci left: 2.830744e-02	ci right 3.130748e-02	k: 1489	n:50000
SLC6A8   50000 perm   10 sec   (5082 perm/sec)   p_kst 2.978000e-02   p_cons 6.726400e-01   p_joint 1.710000e-01

Joint ci ratio: 3.550776e-02	ci left: 1.658271e-01	ci right 1.718383e-01	k: 10129	n:60000
Cons ci ratio: 1.113858e-02	ci left: 6.698816e-01	ci right 6.774016e-01	k: 40419	n:60000
KS ci ratio: 9.249199e-02	ci left: 2.772065e-02	ci right 3.042515e-02	k: 1743	n:60000
SLC6A8   60000 perm   12 sec   (4964 perm/sec)   p_kst 2.905000e-02   p_cons 6.736500e-01   p_joint 1.688167e-01

Outputting figure to mutsig2_images.part000000000161/SLC6A8.2_1960_60000_0.02905_0.67365_0.16882.png
                gene_name: SLC6A8
               theta_stop: 0.092 
                    nperm: 60000 
                     p_ks: 0.029 
        ci_ks_bounds_left: 0.028 
       ci_ks_bounds_right: 0.030 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.17 

Current progress: 95 percent done.
SLC7A8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.615678e-02	ci left: 6.827458e-01	ci right 7.009424e-01	k: 6919	n:10000
KS ci ratio: 2.465067e-02	ci left: 7.076552e-01	ci right 7.254185e-01	k: 7166	n:10000
SLC7A8   10000 perm   2 sec   (6528 perm/sec)   p_kst 7.166000e-01   p_cons 6.919000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000161/SLC7A8.2_1652_10000_0.7166_0.6919_1.png
                gene_name: SLC7A8
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
SLC7A9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.909827e-02	ci left: 6.352285e-01	ci right 6.540872e-01	k: 6447	n:10000
Cons ci ratio: 1.677072e-01	ci left: 4.744132e-02	ci right 5.622208e-02	k: 517	n:10000
KS ci ratio: 1.685487e-02	ci left: 8.367382e-01	ci right 8.510609e-01	k: 8440	n:10000
SLC7A9   10000 perm   1 sec   (6847 perm/sec)   p_kst 8.440000e-01   p_cons 5.170000e-02   p_joint 6.447000e-01

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 1.175757e-01	ci left: 4.954642e-02	ci right 5.578445e-02	k: 1052	n:20000
KS ci ratio: 1.188131e-02	ci left: 8.397066e-01	ci right 8.497929e-01	k: 16896	n:20000
SLC7A9   20000 perm   3 sec   (6021 perm/sec)   p_kst 8.448000e-01   p_cons 5.260000e-02   p_joint 1

Joint ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
Cons ci ratio: 9.709255e-02	ci left: 4.902588e-02	ci right 5.406141e-02	k: 1545	n:30000
KS ci ratio: 9.651506e-03	ci left: 8.420002e-01	ci right 8.501993e-01	k: 25384	n:30000
SLC7A9   30000 perm   5 sec   (5734 perm/sec)   p_kst 8.461333e-01   p_cons 5.150000e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000161/SLC7A9.2_1512_30000_0.84613_0.0515_1.png
                gene_name: SLC7A9
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.051 
      ci_cons_bounds_left: 0.049 
     ci_cons_bounds_right: 0.054 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
SLC8A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.101469e-02	ci left: 1.819585e-01	ci right 1.974227e-01	k: 1896	n:10000
KS ci ratio: 1.168161e-02	ci left: 9.129648e-01	ci right 9.237900e-01	k: 9185	n:10000
SLC8A2   10000 perm   2 sec   (6014 perm/sec)   p_kst 9.185000e-01   p_cons 1.896000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000161/SLC8A2.2_2802_10000_0.9185_0.1896_1.png
                gene_name: SLC8A2
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000161
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 161 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1552>
Subject: Job 8004556: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1552>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000162> was used as the working directory.
Started at Sun Nov 11 15:18:22 2012
Results reported at Sun Nov 11 15:32:34 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000162.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000162.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 162  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000162.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1033.60 sec.
    Max Memory :      4729 MB
    Max Swap   :      7071 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
162
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 162
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 162: processing genes 14567 - 14656
Calculating significance of each gene.
Using projection method.
14567	SLC9A2	2.872336e-01
14568	SLC9A3	1
14569	SLC9A3R1	1
14570	SLC9A3R2	1
14571	SLC9A4	6.274647e-02
14572	SLC9A5	9.589255e-01
14573	SLC9A6	7.073606e-01
14574	SLC9A7	7.445663e-01
14575	SLC9A8	9.386056e-01
14576	SLC9A9	8.100513e-01
14577	SLCO1A2	1.650443e-02
14578	SLCO1B1	8.164046e-04
14579	SLCO1B3	3.818500e-01
14580	SLCO1C1	3.243013e-02
14581	SLCO2A1	6.233055e-01
14582	SLCO2B1	1
14583	SLCO3A1	8.347046e-01
14584	SLCO4A1	3.659475e-01
14585	SLCO4C1	3.236581e-02
14586	SLCO5A1	9.400172e-01
14587	SLCO6A1	1
14588	SLFN11	1
14589	SLFN12	6.285501e-01
14590	SLFN12L	1
14591	SLFN13	9.373673e-01
14592	SLFN5	9.576176e-01
14593	SLFNL1	1
14594	SLIT1	1
14595	SLIT2	9.127106e-01
14596	SLIT3	9.832333e-01
14597	SLITRK1	1
14598	SLITRK2	1.184008e-02
14599	SLITRK3	1
14600	SLITRK4	3.227159e-01
14601	SLITRK5	2.843420e-02
14602	SLITRK6	6.507111e-01
14603	SLK	7.055211e-01
14604	SLMAP	7.844456e-01
14605	SLMO1	1
14606	SLMO2	1
14607	SLN	1
14608	SLPI	1
14609	SLTM	1
14610	SLU7	5.503535e-01
14611	SLURP1	1.266954e-02
14612	SMAD1	1.911328e-01
14613	SMAD2	4.657770e-01
14614	SMAD3	1
14615	SMAD4	3.587782e-02
14616	SMAD5	1
14617	SMAD6	1
14618	SMAD7	2.105493e-01
14619	SMAD9	7.500788e-01
14620	SMAGP	1
14621	SMAP1	8.206980e-01
14622	SMAP2	1.145182e-01
14623	SMARCA1	1.433739e-01
14624	SMARCA2	9.956704e-01
14625	SMARCA4	4.858944e-01
14626	SMARCA5	1
14627	SMARCAD1	4.497708e-01
14628	SMARCAL1	2.749351e-01
14629	SMARCB1	7.454840e-01
14630	SMARCC1	6.692929e-01
14631	SMARCC2	9.443790e-01
14632	SMARCD1	8.827018e-01
14633	SMARCD2	1
14634	SMARCD3	1
14635	SMARCE1	1
14636	SMC1A	9.763136e-01
14637	SMC1B	7.576759e-02
14638	SMC2	8.849052e-01
14639	SMC3	6.399052e-01
14640	SMC4	6.285623e-01
14641	SMC5	9.149729e-01
14642	SMC6	4.298523e-01
14643	SMCHD1	6.254737e-01
14644	SMCP	1
14645	SMCR7	8.672375e-01
14646	SMCR7L	7.067459e-01
14647	SMCR8	7.520919e-01
14648	SMEK1	9.268284e-01
14649	SMEK2	3.551458e-01
14650	SMG1	9.994827e-01
14651	SMG5	9.354714e-01
14652	SMG6	7.083759e-01
14653	SMG7	6.788697e-02
14654	SMNDC1	1
14655	SMO	8.647125e-01
14656	SMOC1	3.267258e-01
Done

Running MutSig 2:
Scatter job 162: processing genes 14567 - 14656
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SLITRK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.432331e-02	ci left: 7.131053e-01	ci right 7.307652e-01	k: 7220	n:10000
Cons ci ratio: 9.019158e-03	ci left: 9.453375e-01	ci right 9.539982e-01	k: 9498	n:10000
KS ci ratio: 3.486271e-02	ci left: 5.485012e-01	ci right 5.680648e-01	k: 5583	n:10000
SLITRK3   10000 perm   3 sec   (3694 perm/sec)   p_kst 5.583000e-01   p_cons 9.498000e-01   p_joint 7.220000e-01

Outputting figure to mutsig2_images.part000000000162/SLITRK3.29_2938_10000_0.5583_0.9498_0.722.png
                gene_name: SLITRK3
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 2 percent done.
SLIT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.085669e-02	ci left: 3.631119e-01	ci right 3.821624e-01	k: 3726	n:10000
KS ci ratio: 1.134314e-02	ci left: 9.173946e-01	ci right 9.279576e-01	k: 9228	n:10000
SLIT2   10000 perm   3 sec   (3692 perm/sec)   p_kst 9.228000e-01   p_cons 3.726000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000162/SLIT2.15_4738_10000_0.9228_0.3726_1.png
                gene_name: SLIT2
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 3 percent done.
SLITRK5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.399040e-02	ci left: 7.186579e-01	ci right 7.362094e-01	k: 7275	n:10000
Cons ci ratio: 2.948673e-02	ci left: 6.290949e-01	ci right 6.480243e-01	k: 6386	n:10000
KS ci ratio: 3.140657e-02	ci left: 5.993553e-01	ci right 6.185812e-01	k: 6090	n:10000
SLITRK5   10000 perm   2 sec   (4519 perm/sec)   p_kst 6.090000e-01   p_cons 6.386000e-01   p_joint 7.275000e-01

Outputting figure to mutsig2_images.part000000000162/SLITRK5.15_2881_10000_0.609_0.6386_0.7275.png
                gene_name: SLITRK5
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 5 percent done.
SLCO1B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.405044e-02	ci left: 1.409954e-01	ci right 1.550103e-01	k: 1479	n:10000
Cons ci ratio: 1.209147e-01	ci left: 8.932164e-02	ci right 1.009155e-01	k: 950	n:10000
KS ci ratio: 8.885890e-02	ci left: 1.556131e-01	ci right 1.701838e-01	k: 1628	n:10000
SLCO1B1   10000 perm   2 sec   (4199 perm/sec)   p_kst 1.628000e-01   p_cons 9.500000e-02   p_joint 1.479000e-01

Joint ci ratio: 9.213143e-02	ci left: 7.916341e-02	ci right 8.685833e-02	k: 1659	n:20000
Cons ci ratio: 8.493493e-02	ci left: 9.214736e-02	ci right 1.003705e-01	k: 1924	n:20000
KS ci ratio: 6.203928e-02	ci left: 1.612127e-01	ci right 1.715844e-01	k: 3327	n:20000
SLCO1B1   20000 perm   5 sec   (3815 perm/sec)   p_kst 1.663500e-01   p_cons 9.620000e-02   p_joint 8.295000e-02

Outputting figure to mutsig2_images.part000000000162/SLCO1B1.13_2132_20000_0.16635_0.0962_0.08295.png
                gene_name: SLCO1B1
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.096 
      ci_cons_bounds_left: 0.092 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.083 
     ci_joint_bounds_left: 0.079 
    ci_joint_bounds_right: 0.087 

Current progress: 7 percent done.
SLCO1B3
Processing conservation and coverage...
Processing mutations... 
Skipping 5 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.559658e-02	ci left: 5.381826e-01	ci right 5.577894e-01	k: 5480	n:10000
Cons ci ratio: 7.625897e-02	ci left: 2.009680e-01	ci right 2.170019e-01	k: 2089	n:10000
KS ci ratio: 2.698805e-02	ci left: 6.691442e-01	ci right 6.875518e-01	k: 6784	n:10000
SLCO1B3   10000 perm   2 sec   (4290 perm/sec)   p_kst 6.784000e-01   p_cons 2.089000e-01   p_joint 5.480000e-01

Outputting figure to mutsig2_images.part000000000162/SLCO1B3.8_2165_10000_0.6784_0.2089_0.548.png
                gene_name: SLCO1B3
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 8 percent done.
SLCO1C1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.364913e-01	ci left: 6.259350e-03	ci right 9.836166e-03	k: 79	n:10000
Cons ci ratio: 7.145810e-01	ci left: 1.943009e-03	ci right 4.162249e-03	k: 29	n:10000
KS ci ratio: 5.722203e-02	ci left: 3.101662e-01	ci right 3.285391e-01	k: 3193	n:10000
SLCO1C1   10000 perm   2 sec   (4176 perm/sec)   p_kst 3.193000e-01   p_cons 2.900000e-03   p_joint 7.900000e-03

Joint ci ratio: 2.216308e-01	ci left: 1.369190e-02	ci right 1.715108e-02	k: 307	n:20000
Cons ci ratio: 5.052976e-01	ci left: 2.246412e-03	ci right 3.803657e-03	k: 59	n:20000
KS ci ratio: 4.148935e-02	ci left: 3.021518e-01	ci right 3.150039e-01	k: 6171	n:20000
SLCO1C1   20000 perm   5 sec   (3797 perm/sec)   p_kst 3.085500e-01   p_cons 2.950000e-03   p_joint 1.535000e-02

Joint ci ratio: 2.244287e-01	ci left: 8.936542e-03	ci right 1.122650e-02	k: 301	n:30000
Cons ci ratio: 4.080544e-01	ci left: 2.442933e-03	ci right 3.722974e-03	k: 91	n:30000
KS ci ratio: 3.389447e-02	ci left: 3.031097e-01	ci right 3.135941e-01	k: 9250	n:30000
SLCO1C1   30000 perm   8 sec   (3645 perm/sec)   p_kst 3.083333e-01   p_cons 3.033333e-03   p_joint 1.003333e-02

Joint ci ratio: 1.756349e-01	ci left: 1.121896e-02	ci right 1.340270e-02	k: 491	n:40000
Cons ci ratio: 3.432433e-01	ci left: 2.693205e-03	ci right 3.830801e-03	k: 129	n:40000
KS ci ratio: 2.845389e-02	ci left: 3.171975e-01	ci right 3.263784e-01	k: 12871	n:40000
SLCO1C1   40000 perm   11 sec   (3543 perm/sec)   p_kst 3.217750e-01   p_cons 3.225000e-03   p_joint 1.227500e-02

Joint ci ratio: 1.695291e-01	ci left: 9.682541e-03	ci right 1.149495e-02	k: 528	n:50000
Cons ci ratio: 3.028287e-01	ci left: 2.834815e-03	ci right 3.864181e-03	k: 166	n:50000
KS ci ratio: 2.545344e-02	ci left: 3.176259e-01	ci right 3.258348e-01	k: 16086	n:50000
SLCO1C1   50000 perm   14 sec   (3458 perm/sec)   p_kst 3.217200e-01   p_cons 3.320000e-03   p_joint 1.056000e-02

Joint ci ratio: 1.454140e-01	ci left: 1.109588e-02	ci right 1.285180e-02	k: 717	n:60000
Cons ci ratio: 2.767212e-01	ci left: 2.872454e-03	ci right 3.809937e-03	k: 199	n:60000
KS ci ratio: 2.353117e-02	ci left: 3.125132e-01	ci right 3.199712e-01	k: 18974	n:60000
SLCO1C1   60000 perm   18 sec   (3391 perm/sec)   p_kst 3.162333e-01   p_cons 3.316667e-03   p_joint 1.195000e-02

Joint ci ratio: 1.149966e-01	ci left: 1.538878e-02	ci right 1.728019e-02	k: 1142	n:70000
Cons ci ratio: 2.489814e-01	ci left: 3.089450e-03	ci right 3.981057e-03	k: 246	n:70000
KS ci ratio: 2.183647e-02	ci left: 3.117874e-01	ci right 3.186851e-01	k: 22066	n:70000
SLCO1C1   70000 perm   21 sec   (3335 perm/sec)   p_kst 3.152286e-01   p_cons 3.514286e-03   p_joint 1.631429e-02

Joint ci ratio: 1.143070e-01	ci left: 1.365874e-02	ci right 1.532674e-02	k: 1158	n:80000
Cons ci ratio: 2.346957e-01	ci left: 3.067300e-03	ci right 3.894353e-03	k: 277	n:80000
KS ci ratio: 2.043469e-02	ci left: 3.118315e-01	ci right 3.182819e-01	k: 25204	n:80000
SLCO1C1   80000 perm   24 sec   (3274 perm/sec)   p_kst 3.150500e-01   p_cons 3.462500e-03   p_joint 1.447500e-02

Joint ci ratio: 1.079747e-01	ci left: 1.365343e-02	ci right 1.522253e-02	k: 1298	n:90000
Cons ci ratio: 2.204789e-01	ci left: 3.114190e-03	ci right 3.896128e-03	k: 314	n:90000
KS ci ratio: 1.922967e-02	ci left: 3.128301e-01	ci right 3.189152e-01	k: 28428	n:90000
SLCO1C1   90000 perm   28 sec   (3222 perm/sec)   p_kst 3.158667e-01   p_cons 3.488889e-03   p_joint 1.442222e-02

Joint ci ratio: 1.190820e-01	ci left: 1.008125e-02	ci right 1.136737e-02	k: 1071	n:100000
Cons ci ratio: 2.068062e-01	ci left: 3.209800e-03	ci right 3.959448e-03	k: 357	n:100000
KS ci ratio: 1.823097e-02	ci left: 3.132685e-01	ci right 3.190422e-01	k: 31615	n:100000
SLCO1C1   100000 perm   32 sec   (3170 perm/sec)   p_kst 3.161500e-01   p_cons 3.570000e-03   p_joint 1.071000e-02

Joint ci ratio: 1.158566e-01	ci left: 9.702909e-03	ci right 1.090494e-02	k: 1132	n:110000
Cons ci ratio: 1.983993e-01	ci left: 3.185521e-03	ci right 3.895597e-03	k: 388	n:110000
KS ci ratio: 1.736195e-02	ci left: 3.139150e-01	ci right 3.194219e-01	k: 34833	n:110000
SLCO1C1   110000 perm   35 sec   (3124 perm/sec)   p_kst 3.166636e-01   p_cons 3.527273e-03   p_joint 1.029091e-02

Joint ci ratio: 1.117958e-01	ci left: 9.574370e-03	ci right 1.071616e-02	k: 1216	n:120000
Cons ci ratio: 1.886994e-01	ci left: 3.245189e-03	ci right 3.929147e-03	k: 429	n:120000
KS ci ratio: 1.659938e-02	ci left: 3.146420e-01	ci right 3.199168e-01	k: 38073	n:120000
SLCO1C1   120000 perm   39 sec   (3068 perm/sec)   p_kst 3.172750e-01   p_cons 3.575000e-03   p_joint 1.013333e-02

Joint ci ratio: 9.861881e-02	ci left: 1.141516e-02	ci right 1.260675e-02	k: 1560	n:130000
Cons ci ratio: 1.824466e-01	ci left: 3.215605e-03	ci right 3.868388e-03	k: 459	n:130000
KS ci ratio: 1.595181e-02	ci left: 3.146474e-01	ci right 3.197146e-01	k: 41233	n:130000
SLCO1C1   130000 perm   43 sec   (3029 perm/sec)   p_kst 3.171769e-01   p_cons 3.530769e-03   p_joint 1.200000e-02

Joint ci ratio: 9.103363e-02	ci left: 1.247601e-02	ci right 1.367285e-02	k: 1829	n:140000
Cons ci ratio: 1.760571e-01	ci left: 3.217882e-03	ci right 3.845815e-03	k: 493	n:140000
KS ci ratio: 1.536618e-02	ci left: 3.148907e-01	ci right 3.197740e-01	k: 44426	n:140000
SLCO1C1   140000 perm   47 sec   (2992 perm/sec)   p_kst 3.173286e-01   p_cons 3.521429e-03   p_joint 1.306429e-02

Joint ci ratio: 7.944100e-02	ci left: 1.533837e-02	ci right 1.661377e-02	k: 2395	n:150000
Cons ci ratio: 1.707826e-01	ci left: 3.201051e-03	ci right 3.805058e-03	k: 524	n:150000
KS ci ratio: 1.483199e-02	ci left: 3.153574e-01	ci right 3.200763e-01	k: 47657	n:150000
SLCO1C1   150000 perm   51 sec   (2954 perm/sec)   p_kst 3.177133e-01   p_cons 3.493333e-03   p_joint 1.596667e-02

Joint ci ratio: 7.592424e-02	ci left: 1.576492e-02	ci right 1.701519e-02	k: 2621	n:160000
Cons ci ratio: 1.653596e-01	ci left: 3.210536e-03	ci right 3.795183e-03	k: 559	n:160000
KS ci ratio: 1.437058e-02	ci left: 3.151444e-01	ci right 3.197122e-01	k: 50788	n:160000
SLCO1C1   160000 perm   55 sec   (2916 perm/sec)   p_kst 3.174250e-01   p_cons 3.493750e-03   p_joint 1.638125e-02

Joint ci ratio: 7.425404e-02	ci left: 1.553013e-02	ci right 1.673351e-02	k: 2741	n:170000
Cons ci ratio: 1.598840e-01	ci left: 3.241762e-03	ci right 3.810670e-03	k: 598	n:170000
KS ci ratio: 1.394479e-02	ci left: 3.151112e-01	ci right 3.195421e-01	k: 53945	n:170000
SLCO1C1   170000 perm   59 sec   (2879 perm/sec)   p_kst 3.173235e-01   p_cons 3.517647e-03   p_joint 1.612353e-02

Joint ci ratio: 7.881816e-02	ci left: 1.302097e-02	ci right 1.409478e-02	k: 2439	n:180000
Cons ci ratio: 1.560269e-01	ci left: 3.221741e-03	ci right 3.772219e-03	k: 628	n:180000
KS ci ratio: 1.355039e-02	ci left: 3.152222e-01	ci right 3.195282e-01	k: 57127	n:180000
SLCO1C1   180000 perm   63 sec   (2844 perm/sec)   p_kst 3.173722e-01   p_cons 3.488889e-03   p_joint 1.355000e-02

Joint ci ratio: 7.812013e-02	ci left: 1.256774e-02	ci right 1.359457e-02	k: 2484	n:190000
Cons ci ratio: 1.526687e-01	ci left: 3.193849e-03	ci right 3.726741e-03	k: 656	n:190000
KS ci ratio: 1.319551e-02	ci left: 3.150655e-01	ci right 3.192558e-01	k: 60260	n:190000
SLCO1C1   190000 perm   68 sec   (2807 perm/sec)   p_kst 3.171579e-01   p_cons 3.452632e-03   p_joint 1.307368e-02

Joint ci ratio: 7.866046e-02	ci left: 1.178230e-02	ci right 1.275191e-02	k: 2452	n:200000
Cons ci ratio: 1.490823e-01	ci left: 3.188116e-03	ci right 3.706441e-03	k: 688	n:200000
KS ci ratio: 1.286743e-02	ci left: 3.149160e-01	ci right 3.189993e-01	k: 63391	n:200000
SLCO1C1   200000 perm   72 sec   (2773 perm/sec)   p_kst 3.169550e-01   p_cons 3.440000e-03   p_joint 1.226000e-02

Joint ci ratio: 6.808885e-02	ci left: 1.500875e-02	ci right 1.607135e-02	k: 3262	n:210000
Cons ci ratio: 1.447335e-01	ci left: 3.228955e-03	ci right 3.737283e-03	k: 730	n:210000
KS ci ratio: 1.258605e-02	ci left: 3.139785e-01	ci right 3.179599e-01	k: 66353	n:210000
SLCO1C1   210000 perm   77 sec   (2742 perm/sec)   p_kst 3.159667e-01   p_cons 3.476190e-03   p_joint 1.553333e-02

Joint ci ratio: 6.797596e-02	ci left: 1.438446e-02	ci right 1.540111e-02	k: 3275	n:220000
Cons ci ratio: 1.416669e-01	ci left: 3.222427e-03	ci right 3.718070e-03	k: 762	n:220000
KS ci ratio: 1.229910e-02	ci left: 3.139395e-01	ci right 3.178290e-01	k: 69494	n:220000
SLCO1C1   220000 perm   81 sec   (2710 perm/sec)   p_kst 3.158818e-01   p_cons 3.463636e-03   p_joint 1.488636e-02

Joint ci ratio: 6.964494e-02	ci left: 1.311352e-02	ci right 1.406401e-02	k: 3124	n:230000
Cons ci ratio: 1.386998e-01	ci left: 3.220767e-03	ci right 3.704923e-03	k: 795	n:230000
KS ci ratio: 1.202947e-02	ci left: 3.139569e-01	ci right 3.177608e-01	k: 72647	n:230000
SLCO1C1   230000 perm   86 sec   (2680 perm/sec)   p_kst 3.158565e-01   p_cons 3.456522e-03   p_joint 1.358261e-02

Joint ci ratio: 6.908486e-02	ci left: 1.277996e-02	ci right 1.369852e-02	k: 3176	n:240000
Cons ci ratio: 1.363248e-01	ci left: 3.199219e-03	ci right 3.671232e-03	k: 823	n:240000
KS ci ratio: 1.177671e-02	ci left: 3.139779e-01	ci right 3.177015e-01	k: 75801	n:240000
SLCO1C1   240000 perm   91 sec   (2648 perm/sec)   p_kst 3.158375e-01   p_cons 3.429167e-03   p_joint 1.323333e-02

Joint ci ratio: 6.591878e-02	ci left: 1.348800e-02	ci right 1.441132e-02	k: 3486	n:250000
Cons ci ratio: 1.337530e-01	ci left: 3.194925e-03	ci right 3.656705e-03	k: 855	n:250000
KS ci ratio: 1.154031e-02	ci left: 3.139581e-01	ci right 3.176062e-01	k: 78945	n:250000
SLCO1C1   250000 perm   96 sec   (2617 perm/sec)   p_kst 3.157800e-01   p_cons 3.420000e-03   p_joint 1.394400e-02

Joint ci ratio: 6.714743e-02	ci left: 1.250381e-02	ci right 1.337633e-02	k: 3363	n:260000
Cons ci ratio: 1.313958e-01	ci left: 3.187319e-03	ci right 3.639247e-03	k: 886	n:260000
KS ci ratio: 1.131629e-02	ci left: 3.139904e-01	ci right 3.175676e-01	k: 82102	n:260000
SLCO1C1   260000 perm   100 sec   (2589 perm/sec)   p_kst 3.157769e-01   p_cons 3.407692e-03   p_joint 1.293462e-02

Joint ci ratio: 6.717384e-02	ci left: 1.203696e-02	ci right 1.287725e-02	k: 3362	n:270000
Cons ci ratio: 1.293003e-01	ci left: 3.173174e-03	ci right 3.615370e-03	k: 915	n:270000
KS ci ratio: 1.110921e-02	ci left: 3.138508e-01	ci right 3.173606e-01	k: 85213	n:270000
SLCO1C1   270000 perm   105 sec   (2560 perm/sec)   p_kst 3.156037e-01   p_cons 3.388889e-03   p_joint 1.245185e-02

Joint ci ratio: 6.634544e-02	ci left: 1.190555e-02	ci right 1.272602e-02	k: 3447	n:280000
Cons ci ratio: 1.269654e-01	ci left: 3.177383e-03	ci right 3.611568e-03	k: 949	n:280000
KS ci ratio: 1.091066e-02	ci left: 3.138181e-01	ci right 3.172643e-01	k: 88351	n:280000
SLCO1C1   280000 perm   111 sec   (2533 perm/sec)   p_kst 3.155393e-01   p_cons 3.389286e-03   p_joint 1.231071e-02

Joint ci ratio: 6.375319e-02	ci left: 1.245851e-02	ci right 1.328230e-02	k: 3731	n:290000
Cons ci ratio: 1.246891e-01	ci left: 3.184710e-03	ci right 3.611517e-03	k: 984	n:290000
KS ci ratio: 1.072418e-02	ci left: 3.137158e-01	ci right 3.171017e-01	k: 91468	n:290000
SLCO1C1   290000 perm   116 sec   (2506 perm/sec)   p_kst 3.154069e-01   p_cons 3.393103e-03   p_joint 1.286552e-02

Joint ci ratio: 6.860148e-02	ci left: 1.039716e-02	ci right 1.113901e-02	k: 3229	n:300000
Cons ci ratio: 1.199053e-01	ci left: 3.337079e-03	ci right 3.765932e-03	k: 1064	n:300000
KS ci ratio: 1.054280e-02	ci left: 3.137906e-01	ci right 3.171196e-01	k: 94636	n:300000
SLCO1C1   300000 perm   121 sec   (2480 perm/sec)   p_kst 3.154533e-01   p_cons 3.546667e-03   p_joint 1.076333e-02

Joint ci ratio: 6.772909e-02	ci left: 1.032810e-02	ci right 1.105528e-02	k: 3313	n:310000
Cons ci ratio: 1.186335e-01	ci left: 3.301408e-03	ci right 3.720861e-03	k: 1087	n:310000
KS ci ratio: 1.037311e-02	ci left: 3.137450e-01	ci right 3.170197e-01	k: 97768	n:310000
SLCO1C1   310000 perm   126 sec   (2454 perm/sec)   p_kst 3.153806e-01   p_cons 3.506452e-03   p_joint 1.068710e-02

Joint ci ratio: 6.797930e-02	ci left: 9.934624e-03	ci right 1.063679e-02	k: 3290	n:320000
Cons ci ratio: 1.166660e-01	ci left: 3.310462e-03	ci right 3.723609e-03	k: 1124	n:320000
KS ci ratio: 1.020464e-02	ci left: 3.139867e-01	ci right 3.172104e-01	k: 100991	n:320000
SLCO1C1   320000 perm   132 sec   (2429 perm/sec)   p_kst 3.155969e-01   p_cons 3.512500e-03   p_joint 1.028125e-02

Joint ci ratio: 6.226095e-02	ci left: 1.149999e-02	ci right 1.224196e-02	k: 3916	n:330000
Cons ci ratio: 1.148925e-01	ci left: 3.313134e-03	ci right 3.719903e-03	k: 1159	n:330000
KS ci ratio: 1.004904e-02	ci left: 3.140023e-01	ci right 3.171767e-01	k: 104144	n:330000
SLCO1C1   330000 perm   137 sec   (2405 perm/sec)   p_kst 3.155879e-01   p_cons 3.512121e-03   p_joint 1.186667e-02

Joint ci ratio: 6.044076e-02	ci left: 1.185108e-02	ci right 1.259257e-02	k: 4154	n:340000
Cons ci ratio: 1.133881e-01	ci left: 3.304262e-03	ci right 3.704274e-03	k: 1190	n:340000
KS ci ratio: 9.899951e-03	ci left: 3.140350e-01	ci right 3.171623e-01	k: 107303	n:340000
SLCO1C1   340000 perm   143 sec   (2380 perm/sec)   p_kst 3.155971e-01   p_cons 3.500000e-03   p_joint 1.221765e-02

Joint ci ratio: 6.107176e-02	ci left: 1.127883e-02	ci right 1.199214e-02	k: 4071	n:350000
Cons ci ratio: 1.112581e-01	ci left: 3.337594e-03	ci right 3.733553e-03	k: 1236	n:350000
KS ci ratio: 9.754660e-03	ci left: 3.141831e-01	ci right 3.172657e-01	k: 110503	n:350000
SLCO1C1   350000 perm   149 sec   (2356 perm/sec)   p_kst 3.157229e-01   p_cons 3.531429e-03   p_joint 1.163143e-02

Joint ci ratio: 5.370513e-02	ci left: 1.419152e-02	ci right 1.497743e-02	k: 5249	n:360000
Cons ci ratio: 1.093294e-01	ci left: 3.363736e-03	ci right 3.755433e-03	k: 1280	n:360000
KS ci ratio: 9.618859e-03	ci left: 3.141763e-01	ci right 3.172156e-01	k: 113650	n:360000
SLCO1C1   360000 perm   154 sec   (2333 perm/sec)   p_kst 3.156944e-01   p_cons 3.555556e-03   p_joint 1.458056e-02

Joint ci ratio: 5.615282e-02	ci left: 1.263481e-02	ci right 1.336744e-02	k: 4809	n:370000
Cons ci ratio: 1.079070e-01	ci left: 3.362219e-03	ci right 3.748323e-03	k: 1314	n:370000
KS ci ratio: 9.486795e-03	ci left: 3.142510e-01	ci right 3.172491e-01	k: 116827	n:370000
SLCO1C1   370000 perm   160 sec   (2310 perm/sec)   p_kst 3.157486e-01   p_cons 3.551351e-03   p_joint 1.299730e-02

Joint ci ratio: 5.630499e-02	ci left: 1.223998e-02	ci right 1.295169e-02	k: 4785	n:380000
Cons ci ratio: 1.066975e-01	ci left: 3.350567e-03	ci right 3.730749e-03	k: 1344	n:380000
KS ci ratio: 9.361280e-03	ci left: 3.142643e-01	ci right 3.172227e-01	k: 119982	n:380000
SLCO1C1   380000 perm   166 sec   (2287 perm/sec)   p_kst 3.157421e-01   p_cons 3.536842e-03   p_joint 1.259211e-02

Joint ci ratio: 5.600110e-02	ci left: 1.206009e-02	ci right 1.275744e-02	k: 4838	n:390000
Cons ci ratio: 1.052976e-01	ci left: 3.354516e-03	ci right 3.729843e-03	k: 1380	n:390000
KS ci ratio: 9.240344e-03	ci left: 3.142900e-01	ci right 3.172102e-01	k: 123142	n:390000
SLCO1C1   390000 perm   172 sec   (2265 perm/sec)   p_kst 3.157487e-01   p_cons 3.538462e-03   p_joint 1.240513e-02

Joint ci ratio: 5.595140e-02	ci left: 1.178319e-02	ci right 1.246390e-02	k: 4848	n:400000
Cons ci ratio: 1.036946e-01	ci left: 3.375345e-03	ci right 3.746903e-03	k: 1423	n:400000
KS ci ratio: 9.124981e-03	ci left: 3.142672e-01	ci right 3.171505e-01	k: 126283	n:400000
SLCO1C1   400000 perm   178 sec   (2244 perm/sec)   p_kst 3.157075e-01   p_cons 3.557500e-03   p_joint 1.212000e-02

Joint ci ratio: 5.618298e-02	ci left: 1.140435e-02	ci right 1.206599e-02	k: 4810	n:410000
Cons ci ratio: 1.022676e-01	ci left: 3.388069e-03	ci right 3.755587e-03	k: 1463	n:410000
KS ci ratio: 9.010374e-03	ci left: 3.144114e-01	ci right 3.172595e-01	k: 129492	n:410000
SLCO1C1   410000 perm   185 sec   (2222 perm/sec)   p_kst 3.158341e-01   p_cons 3.568293e-03   p_joint 1.173171e-02

Joint ci ratio: 5.664526e-02	ci left: 1.095435e-02	ci right 1.159528e-02	k: 4734	n:420000
Cons ci ratio: 1.009654e-01	ci left: 3.395578e-03	ci right 3.758942e-03	k: 1501	n:420000
KS ci ratio: 8.899635e-03	ci left: 3.145655e-01	ci right 3.173799e-01	k: 132708	n:420000
SLCO1C1   420000 perm   191 sec   (2201 perm/sec)   p_kst 3.159714e-01   p_cons 3.573810e-03   p_joint 1.127143e-02

Joint ci ratio: 5.635865e-02	ci left: 1.081192e-02	ci right 1.144121e-02	k: 4783	n:430000
Cons ci ratio: 9.964678e-02	ci left: 3.407302e-03	ci right 3.766880e-03	k: 1541	n:430000
KS ci ratio: 8.796855e-03	ci left: 3.145176e-01	ci right 3.172989e-01	k: 135840	n:430000
SLCO1C1   430000 perm   197 sec   (2181 perm/sec)   p_kst 3.159070e-01   p_cons 3.583721e-03   p_joint 1.112326e-02

Outputting figure to mutsig2_images.part000000000162/SLCO1C1.13_2298_430000_0.31591_0.0035837_0.011123.png
                gene_name: SLCO1C1
               theta_stop: 0.100 
                    nperm: 430000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.0036 
      ci_cons_bounds_left: 0.0034 
     ci_cons_bounds_right: 0.0038 
                  p_joint: 0.011 
     ci_joint_bounds_left: 0.011 
    ci_joint_bounds_right: 0.011 

Current progress: 10 percent done.
SMG1
Processing conservation and coverage...
88% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.168258e-02	ci left: 2.218801e-01	ci right 2.384774e-01	k: 2301	n:10000
Cons ci ratio: 9.965007e-02	ci left: 1.272828e-01	ci right 1.407312e-01	k: 1339	n:10000
KS ci ratio: 6.309380e-02	ci left: 2.696308e-01	ci right 2.872985e-01	k: 2784	n:10000
SMG1   10000 perm   4 sec   (2342 perm/sec)   p_kst 2.784000e-01   p_cons 1.339000e-01   p_joint 2.301000e-01

Outputting figure to mutsig2_images.part000000000162/SMG1.12_11238_10000_0.2784_0.1339_0.2301.png
                gene_name: SMG1
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 11 percent done.
SLITRK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.205655e-02	ci left: 5.895172e-01	ci right 6.088250e-01	k: 5992	n:10000
Cons ci ratio: 1.631413e-02	ci left: 8.452954e-01	ci right 8.592987e-01	k: 8524	n:10000
KS ci ratio: 4.518891e-02	ci left: 4.195704e-01	ci right 4.390708e-01	k: 4293	n:10000
SLITRK2   10000 perm   2 sec   (4349 perm/sec)   p_kst 4.293000e-01   p_cons 8.524000e-01   p_joint 5.992000e-01

Outputting figure to mutsig2_images.part000000000162/SLITRK2.10_2542_10000_0.4293_0.8524_0.5992.png
                gene_name: SLITRK2
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 13 percent done.
SLIT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.455280e-02	ci left: 5.529105e-01	ci right 5.724530e-01	k: 5627	n:10000
Cons ci ratio: 5.116258e-02	ci left: 3.603273e-01	ci right 3.793486e-01	k: 3698	n:10000
KS ci ratio: 4.439572e-02	ci left: 4.282451e-01	ci right 4.477911e-01	k: 4380	n:10000
SLIT3   10000 perm   3 sec   (3678 perm/sec)   p_kst 4.380000e-01   p_cons 3.698000e-01   p_joint 5.627000e-01

Outputting figure to mutsig2_images.part000000000162/SLIT3.9_4716_10000_0.438_0.3698_0.5627.png
                gene_name: SLIT3
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 15 percent done.
SMC1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.116695e-01	ci left: 1.035416e-01	ci right 1.158868e-01	k: 1096	n:10000
Cons ci ratio: 2.120044e-02	ci left: 7.653697e-01	ci right 7.818706e-01	k: 7737	n:10000
KS ci ratio: 1.988626e-01	ci left: 3.367125e-02	ci right 4.120130e-02	k: 373	n:10000
SMC1B   10000 perm   2 sec   (4402 perm/sec)   p_kst 3.730000e-02   p_cons 7.737000e-01   p_joint 1.096000e-01

Joint ci ratio: 8.124902e-02	ci left: 9.999854e-02	ci right 1.085169e-01	k: 2084	n:20000
Cons ci ratio: 1.550813e-02	ci left: 7.556318e-01	ci right 7.674920e-01	k: 15232	n:20000
KS ci ratio: 1.433295e-01	ci left: 3.346084e-02	ci right 3.867516e-02	k: 720	n:20000
SMC1B   20000 perm   5 sec   (3858 perm/sec)   p_kst 3.600000e-02   p_cons 7.616000e-01   p_joint 1.042000e-01

Joint ci ratio: 6.144262e-02	ci left: 1.157839e-01	ci right 1.231566e-01	k: 3583	n:30000
Cons ci ratio: 1.284476e-02	ci left: 7.514677e-01	ci right 7.612159e-01	k: 22691	n:30000
KS ci ratio: 1.156765e-01	ci left: 3.473025e-02	ci right 3.902670e-02	k: 1105	n:30000
SMC1B   30000 perm   8 sec   (3741 perm/sec)   p_kst 3.683333e-02   p_cons 7.563667e-01   p_joint 1.194333e-01

Joint ci ratio: 5.336120e-02	ci left: 1.156939e-01	ci right 1.220615e-01	k: 4754	n:40000
Cons ci ratio: 1.103913e-02	ci left: 7.549535e-01	ci right 7.633588e-01	k: 30367	n:40000
KS ci ratio: 1.002027e-01	ci left: 3.500057e-02	ci right 3.871706e-02	k: 1473	n:40000
SMC1B   40000 perm   11 sec   (3549 perm/sec)   p_kst 3.682500e-02   p_cons 7.591750e-01   p_joint 1.188500e-01

Joint ci ratio: 5.287436e-02	ci left: 9.641526e-02	ci right 1.016714e-01	k: 4951	n:50000
Cons ci ratio: 9.837387e-03	ci left: 7.567542e-01	ci right 7.642555e-01	k: 38026	n:50000
KS ci ratio: 9.017185e-02	ci left: 3.477538e-02	ci right 3.807872e-02	k: 1820	n:50000
SMC1B   50000 perm   14 sec   (3499 perm/sec)   p_kst 3.640000e-02   p_cons 7.605200e-01   p_joint 9.902000e-02

Outputting figure to mutsig2_images.part000000000162/SMC1B.9_3808_50000_0.0364_0.76052_0.09902.png
                gene_name: SMC1B
               theta_stop: 0.090 
                    nperm: 50000 
                     p_ks: 0.036 
        ci_ks_bounds_left: 0.035 
       ci_ks_bounds_right: 0.038 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.099 
     ci_joint_bounds_left: 0.096 
    ci_joint_bounds_right: 0.10 

Current progress: 16 percent done.
SLCO1A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.989796e-02	ci left: 4.812555e-01	ci right 5.009497e-01	k: 4911	n:10000
Cons ci ratio: 8.546557e-02	ci left: 1.663205e-01	ci right 1.812701e-01	k: 1737	n:10000
KS ci ratio: 1.893706e-02	ci left: 8.029834e-01	ci right 8.184352e-01	k: 8108	n:10000
SLCO1A2   10000 perm   2 sec   (4394 perm/sec)   p_kst 8.108000e-01   p_cons 1.737000e-01   p_joint 4.911000e-01

Outputting figure to mutsig2_images.part000000000162/SLCO1A2.8_2069_10000_0.8108_0.1737_0.4911.png
                gene_name: SLCO1A2
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 18 percent done.
SMARCA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.275454e-01	ci left: 8.077027e-02	ci right 9.187210e-02	k: 862	n:10000
Cons ci ratio: 1.436501e-01	ci left: 6.430174e-02	ci right 7.435091e-02	k: 692	n:10000
KS ci ratio: 7.144074e-02	ci left: 2.230647e-01	ci right 2.396920e-01	k: 2313	n:10000
SMARCA4   10000 perm   3 sec   (3638 perm/sec)   p_kst 2.313000e-01   p_cons 6.920000e-02   p_joint 8.620000e-02

Joint ci ratio: 7.752260e-02	ci left: 1.089387e-01	ci right 1.177741e-01	k: 2266	n:20000
Cons ci ratio: 1.017359e-01	ci left: 6.557403e-02	ci right 7.265187e-02	k: 1381	n:20000
KS ci ratio: 5.151684e-02	ci left: 2.186831e-01	ci right 2.302971e-01	k: 4489	n:20000
SMARCA4   20000 perm   6 sec   (3425 perm/sec)   p_kst 2.244500e-01   p_cons 6.905000e-02   p_joint 1.133000e-01

Joint ci ratio: 6.128736e-02	ci left: 1.163101e-01	ci right 1.236970e-01	k: 3599	n:30000
Cons ci ratio: 8.306762e-02	ci left: 6.622250e-02	ci right 7.199462e-02	k: 2072	n:30000
KS ci ratio: 4.041797e-02	ci left: 2.338519e-01	ci right 2.435321e-01	k: 7160	n:30000
SMARCA4   30000 perm   9 sec   (3319 perm/sec)   p_kst 2.386667e-01   p_cons 6.906667e-02   p_joint 1.199667e-01

Outputting figure to mutsig2_images.part000000000162/SMARCA4.8_5189_30000_0.23867_0.069067_0.11997.png
                gene_name: SMARCA4
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.069 
      ci_cons_bounds_left: 0.066 
     ci_cons_bounds_right: 0.072 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 20 percent done.
SMCHD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.105377e-02	ci left: 2.829019e-01	ci right 3.008195e-01	k: 2918	n:10000
Cons ci ratio: 9.838216e-02	ci left: 1.302192e-01	ci right 1.437930e-01	k: 1369	n:10000
KS ci ratio: 4.875899e-02	ci left: 3.829118e-01	ci right 4.021508e-01	k: 3925	n:10000
SMCHD1   10000 perm   3 sec   (3518 perm/sec)   p_kst 3.925000e-01   p_cons 1.369000e-01   p_joint 2.918000e-01

Outputting figure to mutsig2_images.part000000000162/SMCHD1.8_6210_10000_0.3925_0.1369_0.2918.png
                gene_name: SMCHD1
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 21 percent done.
SMG7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.502819e-02	ci left: 8.651913e-01	ci right 8.783912e-01	k: 8719	n:10000
Cons ci ratio: 3.095449e-03	ci left: 9.921711e-01	ci right 9.953309e-01	k: 9939	n:10000
KS ci ratio: 2.272828e-02	ci left: 7.397735e-01	ci right 7.568816e-01	k: 7484	n:10000
SMG7   10000 perm   3 sec   (3728 perm/sec)   p_kst 7.484000e-01   p_cons 9.939000e-01   p_joint 8.719000e-01

Outputting figure to mutsig2_images.part000000000162/SMG7.8_3885_10000_0.7484_0.9939_0.8719.png
                gene_name: SMG7
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 23 percent done.
SLC9A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.217566e-02	ci left: 4.535883e-01	ci right 4.732330e-01	k: 4634	n:10000
Cons ci ratio: 3.216342e-02	ci left: 5.879114e-01	ci right 6.072317e-01	k: 5976	n:10000
KS ci ratio: 4.838285e-02	ci left: 3.865951e-01	ci right 4.058654e-01	k: 3962	n:10000
SLC9A4   10000 perm   2 sec   (4287 perm/sec)   p_kst 3.962000e-01   p_cons 5.976000e-01   p_joint 4.634000e-01

Outputting figure to mutsig2_images.part000000000162/SLC9A4.7_2445_10000_0.3962_0.5976_0.4634.png
                gene_name: SLC9A4
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 25 percent done.
SLC9A9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.691824e-02	ci left: 4.013338e-01	ci right 4.207181e-01	k: 4110	n:10000
Cons ci ratio: 3.763418e-02	ci left: 5.104535e-01	ci right 5.301346e-01	k: 5203	n:10000
KS ci ratio: 6.067200e-02	ci left: 2.854779e-01	ci right 3.034419e-01	k: 2944	n:10000
SLC9A9   10000 perm   2 sec   (4706 perm/sec)   p_kst 2.944000e-01   p_cons 5.203000e-01   p_joint 4.110000e-01

Outputting figure to mutsig2_images.part000000000162/SLC9A9.7_2002_10000_0.2944_0.5203_0.411.png
                gene_name: SLC9A9
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 26 percent done.
SLCO4C1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.543874e-02	ci left: 4.168789e-01	ci right 4.363639e-01	k: 4266	n:10000
Cons ci ratio: 3.971484e-02	ci left: 4.835542e-01	ci right 5.032497e-01	k: 4934	n:10000
KS ci ratio: 5.184997e-02	ci left: 3.541627e-01	ci right 3.731168e-01	k: 3636	n:10000
SLCO4C1   10000 perm   2 sec   (4583 perm/sec)   p_kst 3.636000e-01   p_cons 4.934000e-01   p_joint 4.266000e-01

Outputting figure to mutsig2_images.part000000000162/SLCO4C1.7_2227_10000_0.3636_0.4934_0.4266.png
                gene_name: SLCO4C1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 28 percent done.
SLCO6A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.813948e-02	ci left: 6.505193e-01	ci right 6.691875e-01	k: 6599	n:10000
Cons ci ratio: 5.493380e-02	ci left: 3.280320e-01	ci right 3.466628e-01	k: 3373	n:10000
KS ci ratio: 1.194462e-02	ci left: 9.094652e-01	ci right 9.204916e-01	k: 9151	n:10000
SLCO6A1   10000 perm   2 sec   (4761 perm/sec)   p_kst 9.151000e-01   p_cons 3.373000e-01   p_joint 6.599000e-01

Outputting figure to mutsig2_images.part000000000162/SLCO6A1.7_2212_10000_0.9151_0.3373_0.6599.png
                gene_name: SLCO6A1
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 30 percent done.
SLITRK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.278129e-02	ci left: 3.460122e-01	ci right 3.648721e-01	k: 3554	n:10000
Cons ci ratio: 3.825701e-02	ci left: 5.022507e-01	ci right 5.219422e-01	k: 5121	n:10000
KS ci ratio: 6.870133e-02	ci left: 2.370897e-01	ci right 2.540587e-01	k: 2455	n:10000
SLITRK4   10000 perm   2 sec   (4511 perm/sec)   p_kst 2.455000e-01   p_cons 5.121000e-01   p_joint 3.554000e-01

Outputting figure to mutsig2_images.part000000000162/SLITRK4.7_2518_10000_0.2455_0.5121_0.3554.png
                gene_name: SLITRK4
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 31 percent done.
SMARCA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.423853e-02	ci left: 7.145185e-01	ci right 7.321512e-01	k: 7234	n:10000
Cons ci ratio: 7.905421e-03	ci left: 9.570190e-01	ci right 9.647096e-01	k: 9610	n:10000
KS ci ratio: 2.837802e-02	ci left: 6.466956e-01	ci right 6.654134e-01	k: 6561	n:10000
SMARCA1   10000 perm   2 sec   (4397 perm/sec)   p_kst 6.561000e-01   p_cons 9.610000e-01   p_joint 7.234000e-01

Outputting figure to mutsig2_images.part000000000162/SMARCA1.7_3261_10000_0.6561_0.961_0.7234.png
                gene_name: SMARCA1
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 33 percent done.
SLCO5A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.031013e-02	ci left: 1.846161e-01	ci right 2.001635e-01	k: 1923	n:10000
Cons ci ratio: 1.824960e-01	ci left: 4.006355e-02	ci right 4.820470e-02	k: 440	n:10000
KS ci ratio: 2.022950e-02	ci left: 7.815789e-01	ci right 7.976520e-01	k: 7897	n:10000
SLCO5A1   10000 perm   2 sec   (5042 perm/sec)   p_kst 7.897000e-01   p_cons 4.400000e-02   p_joint 1.923000e-01

Joint ci ratio: 6.435016e-02	ci left: 1.514405e-01	ci right 1.615596e-01	k: 3129	n:20000
Cons ci ratio: 1.280629e-01	ci left: 4.187748e-02	ci right 4.765581e-02	k: 894	n:20000
KS ci ratio: 1.276009e-02	ci left: 8.198137e-01	ci right 8.303917e-01	k: 16503	n:20000
SLCO5A1   20000 perm   4 sec   (4588 perm/sec)   p_kst 8.251500e-01   p_cons 4.470000e-02   p_joint 1.564500e-01

Joint ci ratio: 5.322228e-02	ci left: 1.490424e-01	ci right 1.572249e-01	k: 4593	n:30000
Cons ci ratio: 1.059974e-01	ci left: 4.128440e-02	ci right 4.593784e-02	k: 1307	n:30000
KS ci ratio: 1.044791e-02	ci left: 8.199792e-01	ci right 8.286245e-01	k: 24730	n:30000
SLCO5A1   30000 perm   7 sec   (4408 perm/sec)   p_kst 8.243333e-01   p_cons 4.356667e-02   p_joint 1.531000e-01

Joint ci ratio: 4.068026e-02	ci left: 1.845534e-01	ci right 1.922419e-01	k: 7535	n:40000
Cons ci ratio: 8.877844e-02	ci left: 4.440804e-02	ci right 4.855812e-02	k: 1858	n:40000
KS ci ratio: 9.135701e-03	ci left: 8.177367e-01	ci right 8.252665e-01	k: 32861	n:40000
SLCO5A1   40000 perm   9 sec   (4273 perm/sec)   p_kst 8.215250e-01   p_cons 4.645000e-02   p_joint 1.883750e-01

Outputting figure to mutsig2_images.part000000000162/SLCO5A1.6_2583_40000_0.82152_0.04645_0.18837.png
                gene_name: SLCO5A1
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.046 
      ci_cons_bounds_left: 0.044 
     ci_cons_bounds_right: 0.049 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 34 percent done.
SLITRK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.013812e-02	ci left: 4.782576e-01	ci right 4.979493e-01	k: 4881	n:10000
Cons ci ratio: 6.493302e-02	ci left: 2.583481e-01	ci right 2.757878e-01	k: 2670	n:10000
KS ci ratio: 4.222657e-02	ci left: 4.529894e-01	ci right 4.726323e-01	k: 4628	n:10000
SLITRK1   10000 perm   2 sec   (5202 perm/sec)   p_kst 4.628000e-01   p_cons 2.670000e-01   p_joint 4.881000e-01

Outputting figure to mutsig2_images.part000000000162/SLITRK1.6_2095_10000_0.4628_0.267_0.4881.png
                gene_name: SLITRK1
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 36 percent done.
SLC9A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.432065e-01	ci left: 6.468834e-02	ci right 7.476406e-02	k: 696	n:10000
Cons ci ratio: 2.301187e-02	ci left: 7.350228e-01	ci right 7.522350e-01	k: 7437	n:10000
KS ci ratio: 2.895240e-01	ci left: 1.539246e-02	ci right 2.069361e-02	k: 179	n:10000
SLC9A2   10000 perm   2 sec   (5029 perm/sec)   p_kst 1.790000e-02   p_cons 7.437000e-01   p_joint 6.960000e-02

Joint ci ratio: 1.314023e-01	ci left: 3.979437e-02	ci right 4.543958e-02	k: 851	n:20000
Cons ci ratio: 1.576638e-02	ci left: 7.495320e-01	ci right 7.614936e-01	k: 15111	n:20000
KS ci ratio: 2.002444e-01	ci left: 1.691536e-02	ci right 2.072636e-02	k: 375	n:20000
SLC9A2   20000 perm   4 sec   (4587 perm/sec)   p_kst 1.875000e-02   p_cons 7.555500e-01   p_joint 4.255000e-02

Joint ci ratio: 9.396171e-02	ci left: 5.225117e-02	ci right 5.743546e-02	k: 1644	n:30000
Cons ci ratio: 1.288658e-02	ci left: 7.502597e-01	ci right 7.600241e-01	k: 22655	n:30000
KS ci ratio: 1.609028e-01	ci left: 1.783724e-02	ci right 2.099014e-02	k: 581	n:30000
SLC9A2   30000 perm   7 sec   (4412 perm/sec)   p_kst 1.936667e-02   p_cons 7.551667e-01   p_joint 5.480000e-02

Joint ci ratio: 8.441647e-02	ci left: 4.898671e-02	ci right 5.332874e-02	k: 2045	n:40000
Cons ci ratio: 1.119306e-02	ci left: 7.498240e-01	ci right 7.582891e-01	k: 30163	n:40000
KS ci ratio: 1.398990e-01	ci left: 1.790183e-02	ci right 2.061860e-02	k: 769	n:40000
SLC9A2   40000 perm   9 sec   (4247 perm/sec)   p_kst 1.922500e-02   p_cons 7.540750e-01   p_joint 5.112500e-02

Joint ci ratio: 7.756407e-02	ci left: 4.671183e-02	ci right 5.050080e-02	k: 2429	n:50000
Cons ci ratio: 1.003392e-02	ci left: 7.494364e-01	ci right 7.570141e-01	k: 37662	n:50000
KS ci ratio: 1.261017e-01	ci left: 1.776317e-02	ci right 2.017313e-02	k: 947	n:50000
SLC9A2   50000 perm   12 sec   (4135 perm/sec)   p_kst 1.894000e-02   p_cons 7.532400e-01   p_joint 4.858000e-02

Joint ci ratio: 7.850167e-02	ci left: 3.833151e-02	ci right 4.147986e-02	k: 2393	n:60000
Cons ci ratio: 9.130684e-03	ci left: 7.509520e-01	ci right 7.578567e-01	k: 45265	n:60000
KS ci ratio: 1.157700e-01	ci left: 1.766347e-02	ci right 1.985010e-02	k: 1124	n:60000
SLC9A2   60000 perm   15 sec   (4044 perm/sec)   p_kst 1.873333e-02   p_cons 7.544167e-01   p_joint 3.988333e-02

Joint ci ratio: 7.234194e-02	ci left: 3.879892e-02	ci right 4.172506e-02	k: 2817	n:70000
Cons ci ratio: 8.453102e-03	ci left: 7.512223e-01	ci right 7.576137e-01	k: 52810	n:70000
KS ci ratio: 1.064613e-01	ci left: 1.798755e-02	ci right 2.002403e-02	k: 1329	n:70000
SLC9A2   70000 perm   18 sec   (3962 perm/sec)   p_kst 1.898571e-02   p_cons 7.544286e-01   p_joint 4.024286e-02

Joint ci ratio: 6.940079e-02	ci left: 3.701748e-02	ci right 3.969113e-02	k: 3067	n:80000
Cons ci ratio: 7.930170e-03	ci left: 7.503475e-01	ci right 7.563341e-01	k: 60268	n:80000
KS ci ratio: 1.004650e-01	ci left: 1.773596e-02	ci right 1.962417e-02	k: 1493	n:80000
SLC9A2   80000 perm   21 sec   (3888 perm/sec)   p_kst 1.866250e-02   p_cons 7.533500e-01   p_joint 3.833750e-02

Joint ci ratio: 6.759442e-02	ci left: 3.480328e-02	ci right 3.724897e-02	k: 3241	n:90000
Cons ci ratio: 7.484349e-03	ci left: 7.501353e-01	ci right 7.557817e-01	k: 67767	n:90000
KS ci ratio: 9.511657e-02	ci left: 1.764049e-02	ci right 1.941296e-02	k: 1666	n:90000
SLC9A2   90000 perm   24 sec   (3811 perm/sec)   p_kst 1.851111e-02   p_cons 7.529667e-01   p_joint 3.601111e-02

Outputting figure to mutsig2_images.part000000000162/SLC9A2.5_2487_90000_0.018511_0.75297_0.036011.png
                gene_name: SLC9A2
               theta_stop: 0.095 
                    nperm: 90000 
                     p_ks: 0.019 
        ci_ks_bounds_left: 0.018 
       ci_ks_bounds_right: 0.019 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.036 
     ci_joint_bounds_left: 0.035 
    ci_joint_bounds_right: 0.037 

Current progress: 38 percent done.
SLIT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.990030e-02	ci left: 7.870536e-01	ci right 8.029742e-01	k: 7951	n:10000
Cons ci ratio: 1.883211e-02	ci left: 8.047094e-01	ci right 8.201081e-01	k: 8125	n:10000
KS ci ratio: 3.210328e-02	ci left: 5.888147e-01	ci right 6.081279e-01	k: 5985	n:10000
SLIT1   10000 perm   2 sec   (4142 perm/sec)   p_kst 5.985000e-01   p_cons 8.125000e-01   p_joint 7.951000e-01

Outputting figure to mutsig2_images.part000000000162/SLIT1.5_4753_10000_0.5985_0.8125_0.7951.png
                gene_name: SLIT1
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 39 percent done.
SMAD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.996744e-02	ci left: 7.859382e-01	ci right 8.018902e-01	k: 7940	n:10000
Cons ci ratio: 1.994303e-02	ci left: 7.863438e-01	ci right 8.022844e-01	k: 7944	n:10000
KS ci ratio: 2.860469e-02	ci left: 6.430738e-01	ci right 6.618374e-01	k: 6525	n:10000
SMAD4   10000 perm   2 sec   (4901 perm/sec)   p_kst 6.525000e-01   p_cons 7.944000e-01   p_joint 7.940000e-01

Outputting figure to mutsig2_images.part000000000162/SMAD4.5_1703_10000_0.6525_0.7944_0.794.png
                gene_name: SMAD4
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 41 percent done.
SMARCAL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.812695e-02	ci left: 6.507205e-01	ci right 6.693861e-01	k: 6601	n:10000
Cons ci ratio: 3.509652e-02	ci left: 5.451948e-01	ci right 5.647731e-01	k: 5550	n:10000
KS ci ratio: 3.950888e-02	ci left: 4.861529e-01	ci right 5.058495e-01	k: 4960	n:10000
SMARCAL1   10000 perm   2 sec   (4454 perm/sec)   p_kst 4.960000e-01   p_cons 5.550000e-01   p_joint 6.601000e-01

Outputting figure to mutsig2_images.part000000000162/SMARCAL1.5_2929_10000_0.496_0.555_0.6601.png
                gene_name: SMARCAL1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 43 percent done.
SMARCC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.794962e-02	ci left: 2.411415e-01	ci right 2.582045e-01	k: 2496	n:10000
Cons ci ratio: 1.642256e-01	ci left: 4.945836e-02	ci right 5.840374e-02	k: 538	n:10000
KS ci ratio: 1.678445e-02	ci left: 8.378583e-01	ci right 8.521401e-01	k: 8451	n:10000
SMARCC2   10000 perm   2 sec   (4559 perm/sec)   p_kst 8.451000e-01   p_cons 5.380000e-02   p_joint 2.496000e-01

Joint ci ratio: 5.708264e-02	ci left: 1.853251e-01	ci right 1.962649e-01	k: 3815	n:20000
Cons ci ratio: 1.186500e-01	ci left: 4.867167e-02	ci right 5.485947e-02	k: 1034	n:20000
KS ci ratio: 1.236246e-02	ci left: 8.288711e-01	ci right 8.392316e-01	k: 16682	n:20000
SMARCC2   20000 perm   5 sec   (4167 perm/sec)   p_kst 8.341000e-01   p_cons 5.170000e-02   p_joint 1.907500e-01

Joint ci ratio: 4.562057e-02	ci left: 1.929748e-01	ci right 2.020172e-01	k: 5924	n:30000
Cons ci ratio: 9.735842e-02	ci left: 4.876538e-02	ci right 5.378864e-02	k: 1537	n:30000
KS ci ratio: 1.012656e-02	ci left: 8.289326e-01	ci right 8.374028e-01	k: 24996	n:30000
SMARCC2   30000 perm   7 sec   (4012 perm/sec)   p_kst 8.332000e-01   p_cons 5.123333e-02   p_joint 1.974667e-01

Outputting figure to mutsig2_images.part000000000162/SMARCC2.5_3854_30000_0.8332_0.051233_0.19747.png
                gene_name: SMARCC2
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.051 
      ci_cons_bounds_left: 0.049 
     ci_cons_bounds_right: 0.054 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 44 percent done.
SMC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.802117e-02	ci left: 1.581661e-01	ci right 1.728293e-01	k: 1654	n:10000
Cons ci ratio: 2.095216e-02	ci left: 7.695217e-01	ci right 7.859162e-01	k: 7778	n:10000
KS ci ratio: 1.041866e-01	ci left: 1.175028e-01	ci right 1.305171e-01	k: 1239	n:10000
SMC3   10000 perm   2 sec   (4308 perm/sec)   p_kst 1.239000e-01   p_cons 7.778000e-01   p_joint 1.654000e-01

Joint ci ratio: 6.241084e-02	ci left: 1.595836e-01	ci right 1.699141e-01	k: 3294	n:20000
Cons ci ratio: 1.475533e-02	ci left: 7.733861e-01	ci right 7.849326e-01	k: 15584	n:20000
KS ci ratio: 7.411652e-02	ci left: 1.181338e-01	ci right 1.272762e-01	k: 2453	n:20000
SMC3   20000 perm   5 sec   (3979 perm/sec)   p_kst 1.226500e-01   p_cons 7.792000e-01   p_joint 1.647000e-01

Outputting figure to mutsig2_images.part000000000162/SMC3.5_3770_20000_0.12265_0.7792_0.1647.png
                gene_name: SMC3
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 46 percent done.
SMC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.809659e-02	ci left: 5.043512e-01	ci right 5.240405e-01	k: 5142	n:10000
KS ci ratio: 1.036694e-02	ci left: 9.296799e-01	ci right 9.394650e-01	k: 9347	n:10000
SMC4   10000 perm   2 sec   (4252 perm/sec)   p_kst 9.347000e-01   p_cons 5.142000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000162/SMC4.5_3959_10000_0.9347_0.5142_1.png
                gene_name: SMC4
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 48 percent done.
SMC6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.796826e-02	ci left: 1.311983e-01	ci right 1.448133e-01	k: 1379	n:10000
Cons ci ratio: 1.460163e-02	ci left: 8.716295e-01	ci right 8.845493e-01	k: 8782	n:10000
KS ci ratio: 1.743772e-01	ci left: 4.389243e-02	ci right 5.237330e-02	k: 480	n:10000
SMC6   10000 perm   2 sec   (4598 perm/sec)   p_kst 4.800000e-02   p_cons 8.782000e-01   p_joint 1.379000e-01

Joint ci ratio: 8.452258e-02	ci left: 9.298115e-02	ci right 1.012364e-01	k: 1941	n:20000
Cons ci ratio: 1.053980e-02	ci left: 8.690168e-01	ci right 8.782742e-01	k: 17474	n:20000
KS ci ratio: 1.279880e-01	ci left: 4.192594e-02	ci right 4.770733e-02	k: 895	n:20000
SMC6   20000 perm   5 sec   (4243 perm/sec)   p_kst 4.475000e-02   p_cons 8.737000e-01   p_joint 9.705000e-02

Joint ci ratio: 6.427677e-02	ci left: 1.067435e-01	ci right 1.138655e-01	k: 3308	n:30000
Cons ci ratio: 8.536436e-03	ci left: 8.716772e-01	ci right 8.791832e-01	k: 26264	n:30000
KS ci ratio: 1.019479e-01	ci left: 4.456738e-02	ci right 4.938751e-02	k: 1408	n:30000
SMC6   30000 perm   7 sec   (4058 perm/sec)   p_kst 4.693333e-02   p_cons 8.754667e-01   p_joint 1.102667e-01

Joint ci ratio: 6.075076e-02	ci left: 9.140375e-02	ci right 9.715530e-02	k: 3770	n:40000
Cons ci ratio: 7.345684e-03	ci left: 8.735898e-01	ci right 8.800554e-01	k: 35074	n:40000
KS ci ratio: 8.793834e-02	ci left: 4.524012e-02	ci right 4.942591e-02	k: 1892	n:40000
SMC6   40000 perm   10 sec   (3961 perm/sec)   p_kst 4.730000e-02   p_cons 8.768500e-01   p_joint 9.425000e-02

Outputting figure to mutsig2_images.part000000000162/SMC6.5_3380_40000_0.0473_0.87685_0.09425.png
                gene_name: SMC6
               theta_stop: 0.088 
                    nperm: 40000 
                     p_ks: 0.047 
        ci_ks_bounds_left: 0.045 
       ci_ks_bounds_right: 0.049 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.094 
     ci_joint_bounds_left: 0.091 
    ci_joint_bounds_right: 0.097 

Current progress: 49 percent done.
SMG6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.018079e-02	ci left: 7.823898e-01	ci right 7.984406e-01	k: 7905	n:10000
Cons ci ratio: 2.084912e-02	ci left: 7.712435e-01	ci right 7.875934e-01	k: 7795	n:10000
KS ci ratio: 3.878092e-02	ci left: 4.954504e-01	ci right 5.151465e-01	k: 5053	n:10000
SMG6   10000 perm   2 sec   (4346 perm/sec)   p_kst 5.053000e-01   p_cons 7.795000e-01   p_joint 7.905000e-01

Outputting figure to mutsig2_images.part000000000162/SMG6.5_4336_10000_0.5053_0.7795_0.7905.png
                gene_name: SMG6
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 51 percent done.
SLCO2A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.417606e-03	ci left: 9.517953e-01	ci right 9.599365e-01	k: 9560	n:10000
Cons ci ratio: 3.334015e-02	ci left: 5.704549e-01	ci right 5.898984e-01	k: 5802	n:10000
KS ci ratio: 2.542302e-02	ci left: 6.948436e-01	ci right 7.128375e-01	k: 7039	n:10000
SLCO2A1   10000 perm   2 sec   (5280 perm/sec)   p_kst 7.039000e-01   p_cons 5.802000e-01   p_joint 9.560000e-01

Outputting figure to mutsig2_images.part000000000162/SLCO2A1.4_1988_10000_0.7039_0.5802_0.956.png
                gene_name: SLCO2A1
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 52 percent done.
SLCO4A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.221025e-02	ci left: 5.872089e-01	ci right 6.065346e-01	k: 5969	n:10000
Cons ci ratio: 6.606290e-02	ci left: 2.517205e-01	ci right 2.690193e-01	k: 2603	n:10000
KS ci ratio: 2.650694e-02	ci left: 6.770018e-01	ci right 6.952896e-01	k: 6862	n:10000
SLCO4A1   10000 perm   2 sec   (5820 perm/sec)   p_kst 6.862000e-01   p_cons 2.603000e-01   p_joint 5.969000e-01

Outputting figure to mutsig2_images.part000000000162/SLCO4A1.4_2213_10000_0.6862_0.2603_0.5969.png
                gene_name: SLCO4A1
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 54 percent done.
SLK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.862992e-02	ci left: 6.426714e-01	ci right 6.614400e-01	k: 6521	n:10000
Cons ci ratio: 6.161973e-02	ci left: 2.791374e-01	ci right 2.969862e-01	k: 2880	n:10000
KS ci ratio: 2.428092e-02	ci left: 7.138119e-01	ci right 7.314582e-01	k: 7227	n:10000
SLK   10000 perm   2 sec   (4709 perm/sec)   p_kst 7.227000e-01   p_cons 2.880000e-01   p_joint 6.521000e-01

Outputting figure to mutsig2_images.part000000000162/SLK.4_3784_10000_0.7227_0.288_0.6521.png
                gene_name: SLK
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 56 percent done.
SMAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.538644e-02	ci left: 6.954487e-01	ci right 7.134321e-01	k: 7045	n:10000
Cons ci ratio: 7.043147e-02	ci left: 2.281004e-01	ci right 2.448534e-01	k: 2364	n:10000
KS ci ratio: 2.907287e-02	ci left: 6.356307e-01	ci right 6.544847e-01	k: 6451	n:10000
SMAP2   10000 perm   2 sec   (5582 perm/sec)   p_kst 6.451000e-01   p_cons 2.364000e-01   p_joint 7.045000e-01

Outputting figure to mutsig2_images.part000000000162/SMAP2.4_1330_10000_0.6451_0.2364_0.7045.png
                gene_name: SMAP2
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.71 

Current progress: 57 percent done.
SMARCA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.230261e-02	ci left: 2.746806e-01	ci right 2.924457e-01	k: 2835	n:10000
Cons ci ratio: 5.110775e-02	ci left: 3.608245e-01	ci right 3.798511e-01	k: 3703	n:10000
KS ci ratio: 6.409772e-02	ci left: 2.633947e-01	ci right 2.809382e-01	k: 2721	n:10000
SMARCA2   10000 perm   2 sec   (4125 perm/sec)   p_kst 2.721000e-01   p_cons 3.703000e-01   p_joint 2.835000e-01

Outputting figure to mutsig2_images.part000000000162/SMARCA2.4_4905_10000_0.2721_0.3703_0.2835.png
                gene_name: SMARCA2
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 59 percent done.
SMARCAD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.851016e-02	ci left: 6.445828e-01	ci right 6.633275e-01	k: 6540	n:10000
Cons ci ratio: 2.372437e-02	ci left: 7.231012e-01	ci right 7.405635e-01	k: 7319	n:10000
KS ci ratio: 3.613873e-02	ci left: 5.306718e-01	ci right 5.503046e-01	k: 5405	n:10000
SMARCAD1   10000 perm   2 sec   (4795 perm/sec)   p_kst 5.405000e-01   p_cons 7.319000e-01   p_joint 6.540000e-01

Outputting figure to mutsig2_images.part000000000162/SMARCAD1.4_3179_10000_0.5405_0.7319_0.654.png
                gene_name: SMARCAD1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 61 percent done.
SMARCC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.650363e-01	ci left: 4.897794e-02	ci right 5.788448e-02	k: 533	n:10000
Cons ci ratio: 8.898945e-02	ci left: 1.552204e-01	ci right 1.697768e-01	k: 1624	n:10000
KS ci ratio: 1.460418e-01	ci left: 6.227288e-02	ci right 7.218104e-02	k: 671	n:10000
SMARCC1   10000 perm   2 sec   (4973 perm/sec)   p_kst 6.710000e-02   p_cons 1.624000e-01   p_joint 5.330000e-02

Joint ci ratio: 7.653606e-02	ci left: 1.114947e-01	ci right 1.204173e-01	k: 2318	n:20000
Cons ci ratio: 6.353391e-02	ci left: 1.547958e-01	ci right 1.650033e-01	k: 3197	n:20000
KS ci ratio: 1.050830e-01	ci left: 6.162181e-02	ci right 6.850530e-02	k: 1300	n:20000
SMARCC1   20000 perm   4 sec   (4495 perm/sec)   p_kst 6.500000e-02   p_cons 1.598500e-01   p_joint 1.159000e-01

Joint ci ratio: 8.557791e-02	ci left: 6.256256e-02	ci right 6.818863e-02	k: 1960	n:30000
Cons ci ratio: 5.193349e-02	ci left: 1.554392e-01	ci right 1.637602e-01	k: 4787	n:30000
KS ci ratio: 8.562464e-02	ci left: 6.249723e-02	ci right 6.812065e-02	k: 1958	n:30000
SMARCC1   30000 perm   7 sec   (4318 perm/sec)   p_kst 6.526667e-02   p_cons 1.595667e-01   p_joint 6.533333e-02

Outputting figure to mutsig2_images.part000000000162/SMARCC1.4_3430_30000_0.065267_0.15957_0.065333.png
                gene_name: SMARCC1
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.065 
        ci_ks_bounds_left: 0.062 
       ci_ks_bounds_right: 0.068 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.065 
     ci_joint_bounds_left: 0.063 
    ci_joint_bounds_right: 0.068 

Current progress: 62 percent done.
SMC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.354280e-01	ci left: 7.204238e-02	ci right 8.260541e-02	k: 772	n:10000
Cons ci ratio: 9.956429e-02	ci left: 1.274785e-01	ci right 1.409354e-01	k: 1341	n:10000
KS ci ratio: 9.809198e-02	ci left: 1.309046e-01	ci right 1.445072e-01	k: 1376	n:10000
SMC2   10000 perm   2 sec   (4767 perm/sec)   p_kst 1.376000e-01   p_cons 1.341000e-01   p_joint 7.720000e-02

Joint ci ratio: 1.002250e-01	ci left: 6.747821e-02	ci right 7.464710e-02	k: 1420	n:20000
Cons ci ratio: 7.265587e-02	ci left: 1.224148e-01	ci right 1.316940e-01	k: 2540	n:20000
KS ci ratio: 6.875588e-02	ci left: 1.349723e-01	ci right 1.446327e-01	k: 2795	n:20000
SMC2   20000 perm   5 sec   (4383 perm/sec)   p_kst 1.397500e-01   p_cons 1.270000e-01   p_joint 7.100000e-02

Joint ci ratio: 6.051625e-02	ci left: 1.189744e-01	ci right 1.264321e-01	k: 3680	n:30000
Cons ci ratio: 5.898286e-02	ci left: 1.245352e-01	ci right 1.321370e-01	k: 3849	n:30000
KS ci ratio: 5.587624e-02	ci left: 1.369812e-01	ci right 1.448884e-01	k: 4227	n:30000
SMC2   30000 perm   7 sec   (4217 perm/sec)   p_kst 1.409000e-01   p_cons 1.283000e-01   p_joint 1.226667e-01

Outputting figure to mutsig2_images.part000000000162/SMC2.4_3690_30000_0.1409_0.1283_0.12267.png
                gene_name: SMC2
               theta_stop: 0.061 
                    nperm: 30000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 64 percent done.
SMEK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.257621e-02	ci left: 1.762516e-01	ci right 1.915330e-01	k: 1838	n:10000
Cons ci ratio: 1.029893e-02	ci left: 9.305074e-01	ci right 9.402371e-01	k: 9355	n:10000
KS ci ratio: 8.257621e-02	ci left: 1.762516e-01	ci right 1.915330e-01	k: 1838	n:10000
SMEK2   10000 perm   2 sec   (5063 perm/sec)   p_kst 1.838000e-01   p_cons 9.355000e-01   p_joint 1.838000e-01

Outputting figure to mutsig2_images.part000000000162/SMEK2.4_2618_10000_0.1838_0.9355_0.1838.png
                gene_name: SMEK2
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 66 percent done.
SLC9A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.662210e-02	ci left: 3.147305e-01	ci right 3.331722e-01	k: 3239	n:10000
Cons ci ratio: 4.831215e-02	ci left: 3.872920e-01	ci right 4.065681e-01	k: 3969	n:10000
KS ci ratio: 7.254263e-02	ci left: 2.177347e-01	ci right 2.342252e-01	k: 2259	n:10000
SLC9A3   10000 perm   2 sec   (5231 perm/sec)   p_kst 2.259000e-01   p_cons 3.969000e-01   p_joint 3.239000e-01

Outputting figure to mutsig2_images.part000000000162/SLC9A3.3_2573_10000_0.2259_0.3969_0.3239.png
                gene_name: SLC9A3
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 67 percent done.
SLC9A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.870345e-02	ci left: 4.964503e-01	ci right 5.161460e-01	k: 5063	n:10000
Cons ci ratio: 7.096209e-02	ci left: 2.254342e-01	ci right 2.421211e-01	k: 2337	n:10000
KS ci ratio: 5.464026e-02	ci left: 3.304153e-01	ci right 3.490782e-01	k: 3397	n:10000
SLC9A5   10000 perm   2 sec   (5073 perm/sec)   p_kst 3.397000e-01   p_cons 2.337000e-01   p_joint 5.063000e-01

Outputting figure to mutsig2_images.part000000000162/SLC9A5.3_2755_10000_0.3397_0.2337_0.5063.png
                gene_name: SLC9A5
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 69 percent done.
SLFN11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.350728e-03	ci left: 9.789852e-01	ci right 9.843289e-01	k: 9818	n:10000
KS ci ratio: 2.177474e-02	ci left: 7.557537e-01	ci right 7.724921e-01	k: 7642	n:10000
SLFN11   10000 perm   2 sec   (5097 perm/sec)   p_kst 7.642000e-01   p_cons 9.818000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000162/SLFN11.3_2722_10000_0.7642_0.9818_1.png
                gene_name: SLFN11
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
SLITRK6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.605704e-02	ci left: 4.103009e-01	ci right 4.297457e-01	k: 4200	n:10000
Cons ci ratio: 4.480377e-02	ci left: 4.237578e-01	ci right 4.432810e-01	k: 4335	n:10000
KS ci ratio: 6.295281e-02	ci left: 2.705218e-01	ci right 2.882069e-01	k: 2793	n:10000
SLITRK6   10000 perm   2 sec   (5447 perm/sec)   p_kst 2.793000e-01   p_cons 4.335000e-01   p_joint 4.200000e-01

Outputting figure to mutsig2_images.part000000000162/SLITRK6.3_2530_10000_0.2793_0.4335_0.42.png
                gene_name: SLITRK6
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 72 percent done.
SLTM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.553197e-02	ci left: 5.390841e-01	ci right 5.586874e-01	k: 5489	n:10000
Cons ci ratio: 3.313530e-02	ci left: 5.734637e-01	ci right 5.928878e-01	k: 5832	n:10000
KS ci ratio: 4.401905e-02	ci left: 4.324339e-01	ci right 4.519998e-01	k: 4422	n:10000
SLTM   10000 perm   2 sec   (5074 perm/sec)   p_kst 4.422000e-01   p_cons 5.832000e-01   p_joint 5.489000e-01

Outputting figure to mutsig2_images.part000000000162/SLTM.3_3189_10000_0.4422_0.5832_0.5489.png
                gene_name: SLTM
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 74 percent done.
SLURP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.556918e-02	ci left: 2.545889e-01	ci right 2.719492e-01	k: 2632	n:10000
Cons ci ratio: 1.151790e-01	ci left: 9.779067e-02	ci right 1.098412e-01	k: 1037	n:10000
KS ci ratio: 2.141821e-02	ci left: 7.617251e-01	ci right 7.783173e-01	k: 7701	n:10000
SLURP1   10000 perm   2 sec   (6512 perm/sec)   p_kst 7.701000e-01   p_cons 1.037000e-01   p_joint 2.632000e-01

Joint ci ratio: 3.967515e-02	ci left: 3.214440e-01	ci right 3.345060e-01	k: 6559	n:20000
Cons ci ratio: 8.188621e-02	ci left: 9.857491e-02	ci right 1.070410e-01	k: 2055	n:20000
KS ci ratio: 1.498664e-02	ci left: 7.679372e-01	ci right 7.795831e-01	k: 15476	n:20000
SLURP1   20000 perm   3 sec   (5796 perm/sec)   p_kst 7.738000e-01   p_cons 1.027500e-01   p_joint 3.279500e-01

Outputting figure to mutsig2_images.part000000000162/SLURP1.3_324_20000_0.7738_0.10275_0.32795.png
                gene_name: SLURP1
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.099 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 75 percent done.
SMAD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.476599e-02	ci left: 7.057380e-01	ci right 7.235368e-01	k: 7147	n:10000
KS ci ratio: 1.842321e-02	ci left: 8.114128e-01	ci right 8.266008e-01	k: 8191	n:10000
SMAD1   10000 perm   2 sec   (5671 perm/sec)   p_kst 8.191000e-01   p_cons 7.147000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000162/SMAD1.3_1422_10000_0.8191_0.7147_1.png
                gene_name: SMAD1
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
SMCR8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.814236e-02	ci left: 5.037510e-01	ci right 5.234410e-01	k: 5136	n:10000
Cons ci ratio: 3.939842e-02	ci left: 4.875523e-01	ci right 5.072492e-01	k: 4974	n:10000
KS ci ratio: 4.060676e-02	ci left: 4.724627e-01	ci right 4.921476e-01	k: 4823	n:10000
SMCR8   10000 perm   2 sec   (5294 perm/sec)   p_kst 4.823000e-01   p_cons 4.974000e-01   p_joint 5.136000e-01

Outputting figure to mutsig2_images.part000000000162/SMCR8.3_2822_10000_0.4823_0.4974_0.5136.png
                gene_name: SMCR8
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 79 percent done.
SLC9A6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.856686e-02	ci left: 6.436774e-01	ci right 6.624334e-01	k: 6531	n:10000
KS ci ratio: 4.651369e-02	ci left: 4.055180e-01	ci right 4.249314e-01	k: 4152	n:10000
SLC9A6   10000 perm   2 sec   (5735 perm/sec)   p_kst 4.152000e-01   p_cons 6.531000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000162/SLC9A6.2_2170_10000_0.4152_0.6531_1.png
                gene_name: SLC9A6
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
SLC9A7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.516905e-02	ci left: 8.630465e-01	ci right 8.763374e-01	k: 8698	n:10000
KS ci ratio: 5.406084e-02	ci left: 3.351826e-01	ci right 3.539081e-01	k: 3445	n:10000
SLC9A7   10000 perm   2 sec   (5917 perm/sec)   p_kst 3.445000e-01   p_cons 8.698000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000162/SLC9A7.2_2246_10000_0.3445_0.8698_1.png
                gene_name: SLC9A7
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
SLCO2B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.697569e-02	ci left: 6.693457e-01	ci right 6.877502e-01	k: 6786	n:10000
Cons ci ratio: 6.298409e-02	ci left: 2.703238e-01	ci right 2.880050e-01	k: 2791	n:10000
KS ci ratio: 2.055178e-02	ci left: 7.762076e-01	ci right 7.924264e-01	k: 7844	n:10000
SLCO2B1   10000 perm   2 sec   (5704 perm/sec)   p_kst 7.844000e-01   p_cons 2.791000e-01   p_joint 6.786000e-01

Outputting figure to mutsig2_images.part000000000162/SLCO2B1.2_2186_10000_0.7844_0.2791_0.6786.png
                gene_name: SLCO2B1
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 84 percent done.
SLFN12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.906652e-02	ci left: 8.008515e-01	ci right 8.163683e-01	k: 8087	n:10000
KS ci ratio: 2.936549e-02	ci left: 6.310052e-01	ci right 6.499129e-01	k: 6405	n:10000
SLFN12   10000 perm   2 sec   (5969 perm/sec)   p_kst 6.405000e-01   p_cons 8.087000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000162/SLFN12.2_1749_10000_0.6405_0.8087_1.png
                gene_name: SLFN12
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 85 percent done.
SLMAP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.753709e-03	ci left: 9.830684e-01	ci right 9.878427e-01	k: 9856	n:10000
Cons ci ratio: 6.859028e-02	ci left: 2.376826e-01	ci right 2.546655e-01	k: 2461	n:10000
KS ci ratio: 1.017911e-02	ci left: 9.319559e-01	ci right 9.415877e-01	k: 9369	n:10000
SLMAP   10000 perm   2 sec   (5732 perm/sec)   p_kst 9.369000e-01   p_cons 2.461000e-01   p_joint 9.856000e-01

Outputting figure to mutsig2_images.part000000000162/SLMAP.2_2520_10000_0.9369_0.2461_0.9856.png
                gene_name: SLMAP
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 87 percent done.
SLU7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.854166e-02	ci left: 6.440798e-01	ci right 6.628308e-01	k: 6535	n:10000
KS ci ratio: 5.016777e-02	ci left: 3.694779e-01	ci right 3.885927e-01	k: 3790	n:10000
SLU7   10000 perm   2 sec   (5939 perm/sec)   p_kst 3.790000e-01   p_cons 6.535000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000162/SLU7.2_1821_10000_0.379_0.6535_1.png
                gene_name: SLU7
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
SMAD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.583094e-02	ci left: 4.126927e-01	ci right 4.321525e-01	k: 4224	n:10000
KS ci ratio: 4.781136e-02	ci left: 3.922704e-01	ci right 4.115868e-01	k: 4019	n:10000
SMAD2   10000 perm   2 sec   (6161 perm/sec)   p_kst 4.019000e-01   p_cons 4.224000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000162/SMAD2.2_1444_10000_0.4019_0.4224_1.png
                gene_name: SMAD2
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
SMAD7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.435388e-01	ci left: 6.439839e-02	ci right 7.445420e-02	k: 693	n:10000
Cons ci ratio: 9.342158e-02	ci left: 1.426620e-01	ci right 1.567427e-01	k: 1496	n:10000
KS ci ratio: 9.021878e-02	ci left: 1.515885e-01	ci right 1.660108e-01	k: 1587	n:10000
SMAD7   10000 perm   2 sec   (6274 perm/sec)   p_kst 1.587000e-01   p_cons 1.496000e-01   p_joint 6.930000e-02

Joint ci ratio: 8.092443e-02	ci left: 1.007350e-01	ci right 1.092802e-01	k: 2099	n:20000
Cons ci ratio: 5.991330e-02	ci left: 1.709916e-01	ci right 1.816027e-01	k: 3525	n:20000
KS ci ratio: 6.320487e-02	ci left: 1.561777e-01	ci right 1.664210e-01	k: 3225	n:20000
SMAD7   20000 perm   4 sec   (5558 perm/sec)   p_kst 1.612500e-01   p_cons 1.762500e-01   p_joint 1.049500e-01

Outputting figure to mutsig2_images.part000000000162/SMAD7.2_1297_20000_0.16125_0.17625_0.10495.png
                gene_name: SMAD7
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 92 percent done.
SMC1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.580278e-02	ci left: 4.129917e-01	ci right 4.324533e-01	k: 4227	n:10000
Cons ci ratio: 3.428683e-02	ci left: 5.567190e-01	ci right 5.762422e-01	k: 5665	n:10000
KS ci ratio: 1.844739e-01	ci left: 3.920326e-02	ci right 4.726556e-02	k: 431	n:10000
SMC1A   10000 perm   2 sec   (5107 perm/sec)   p_kst 4.310000e-02   p_cons 5.665000e-01   p_joint 4.227000e-01

Joint ci ratio: 3.632516e-02	ci left: 3.612611e-01	ci right 3.746773e-01	k: 7359	n:20000
Cons ci ratio: 2.425334e-02	ci left: 5.594475e-01	ci right 5.732332e-01	k: 11327	n:20000
KS ci ratio: 1.299748e-01	ci left: 4.066614e-02	ci right 4.636753e-02	k: 869	n:20000
SMC1A   20000 perm   4 sec   (4621 perm/sec)   p_kst 4.345000e-02   p_cons 5.663500e-01   p_joint 3.679500e-01

Joint ci ratio: 4.672403e-02	ci left: 1.855743e-01	ci right 1.944858e-01	k: 5700	n:30000
Cons ci ratio: 2.034826e-02	ci left: 5.473190e-01	ci right 5.586041e-01	k: 16589	n:30000
KS ci ratio: 1.058706e-01	ci left: 4.138187e-02	ci right 4.604035e-02	k: 1310	n:30000
SMC1A   30000 perm   7 sec   (4426 perm/sec)   p_kst 4.366667e-02   p_cons 5.529667e-01   p_joint 1.900000e-01

Joint ci ratio: 4.030832e-02	ci left: 1.873563e-01	ci right 1.950886e-01	k: 7648	n:40000
Cons ci ratio: 1.766571e-02	ci left: 5.468603e-01	ci right 5.566322e-01	k: 22070	n:40000
KS ci ratio: 9.226802e-02	ci left: 4.117946e-02	ci right 4.518720e-02	k: 1726	n:40000
SMC1A   40000 perm   9 sec   (4277 perm/sec)   p_kst 4.315000e-02   p_cons 5.517500e-01   p_joint 1.912000e-01

Outputting figure to mutsig2_images.part000000000162/SMC1A.2_3802_40000_0.04315_0.55175_0.1912.png
                gene_name: SMC1A
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.043 
        ci_ks_bounds_left: 0.041 
       ci_ks_bounds_right: 0.045 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 93 percent done.
SMC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.761010e-02	ci left: 8.246276e-01	ci right 8.393784e-01	k: 8321	n:10000
Cons ci ratio: 4.059863e-02	ci left: 4.725626e-01	ci right 4.922477e-01	k: 4824	n:10000
KS ci ratio: 1.324787e-01	ci left: 7.514340e-02	ci right 8.590246e-02	k: 804	n:10000
SMC5   10000 perm   2 sec   (5099 perm/sec)   p_kst 8.040000e-02   p_cons 4.824000e-01   p_joint 8.321000e-01

Joint ci ratio: 2.686223e-02	ci left: 5.086970e-01	ci right 5.225984e-01	k: 10313	n:20000
Cons ci ratio: 2.892336e-02	ci left: 4.717553e-01	ci right 4.856509e-01	k: 9574	n:20000
KS ci ratio: 9.444622e-02	ci left: 7.554264e-02	ci right 8.308021e-02	k: 1585	n:20000
SMC5   20000 perm   4 sec   (4600 perm/sec)   p_kst 7.925000e-02   p_cons 4.787000e-01   p_joint 5.156500e-01

Outputting figure to mutsig2_images.part000000000162/SMC5.2_3406_20000_0.07925_0.4787_0.51565.png
                gene_name: SMC5
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.079 
        ci_ks_bounds_left: 0.076 
       ci_ks_bounds_right: 0.083 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.52 

Current progress: 95 percent done.
SMCR7L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.419989e-02	ci left: 1.406033e-01	ci right 1.546027e-01	k: 1475	n:10000
KS ci ratio: 8.265884e-02	ci left: 1.759564e-01	ci right 1.912283e-01	k: 1835	n:10000
SMCR7L   10000 perm   2 sec   (5944 perm/sec)   p_kst 1.835000e-01   p_cons 1.475000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000162/SMCR7L.2_1408_10000_0.1835_0.1475_1.png
                gene_name: SMCR7L
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
SMG5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.420826e-02	ci left: 7.150233e-01	ci right 7.326461e-01	k: 7239	n:10000
Cons ci ratio: 5.680355e-02	ci left: 3.133413e-01	ci right 3.317622e-01	k: 3225	n:10000
KS ci ratio: 2.768326e-02	ci left: 6.578667e-01	ci right 6.764359e-01	k: 6672	n:10000
SMG5   10000 perm   2 sec   (5400 perm/sec)   p_kst 6.672000e-01   p_cons 3.225000e-01   p_joint 7.239000e-01

Outputting figure to mutsig2_images.part000000000162/SMG5.2_3139_10000_0.6672_0.3225_0.7239.png
                gene_name: SMG5
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 98 percent done.
SMOC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.052912e-02	ci left: 2.276066e-01	ci right 2.443474e-01	k: 2359	n:10000
Cons ci ratio: 1.466295e-02	ci left: 8.707094e-01	ci right 8.836699e-01	k: 8773	n:10000
KS ci ratio: 8.783046e-02	ci left: 1.587554e-01	ci right 1.734397e-01	k: 1660	n:10000
SMOC1   10000 perm   2 sec   (6258 perm/sec)   p_kst 1.660000e-01   p_cons 8.773000e-01   p_joint 2.359000e-01

Outputting figure to mutsig2_images.part000000000162/SMOC1.2_1356_10000_0.166_0.8773_0.2359.png
                gene_name: SMOC1
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000162
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 162 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1650>
Subject: Job 8004559: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1650>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000163> was used as the working directory.
Started at Sun Nov 11 15:18:22 2012
Results reported at Sun Nov 11 15:53:03 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000163.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000163.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 163  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000163.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   2169.76 sec.
    Max Memory :      4762 MB
    Max Swap   :      7141 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
163
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 163
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 163: processing genes 14657 - 14747
Calculating significance of each gene.
Using projection method.
14657	SMOC2	3.136918e-01
14658	SMOX	2.469306e-01
14659	SMPD1	2.865760e-01
14660	SMPD2	6.690553e-01
14661	SMPD3	4.502796e-01
14662	SMPD4	1.212241e-02
14663	SMPDL3A	6.173700e-01
14664	SMPDL3B	1
14665	SMPX	1
14666	SMR3A	1
14667	SMR3B	3.401911e-01
14668	SMS	3.619458e-01
14669	SMTN	9.125828e-01
14670	SMTNL1	8.215719e-01
14671	SMTNL2	1
14672	SMU1	1
14673	SMUG1	3.527249e-01
14674	SMURF1	8.275648e-01
14675	SMURF2	1
14676	SMYD1	2.204071e-02
14677	SMYD2	4.565297e-01
14678	SMYD3	1
14679	SMYD4	9.581492e-01
14680	SMYD5	7.944321e-01
14681	SNAI1	2.071145e-02
14682	SNAI2	1
14683	SNAI3	1
14684	SNAP23	4.959665e-01
14685	SNAP25	6.781242e-01
14686	SNAP29	1
14687	SNAP47	2.407685e-01
14688	SNAP91	8.736845e-01
14689	SNAPC1	5.133126e-01
14690	SNAPC2	1
14691	SNAPC3	1
In gene SNAPC4 the following bins exceed PROBCAP:
    LUSC-34-5241-TP	categ 6	N = 3804    n = 1	mu =   1.00e-07
14692	SNAPC4	1.046945e-01
14693	SNAPC5	1
14694	SNAPIN	1
14695	SNCA	1
14696	SNCAIP	6.642182e-01
14697	SNCB	4.375177e-01
14698	SNCG	1
14699	SND1	1
14700	SNED1	9.518187e-01
14701	SNF8	1
14702	SNHG3-RCC1	1
14703	SNIP1	2.379546e-02
14704	SNN	1
14705	SNPH	4.184335e-01
14706	SNRK	1
14707	SNRNP200	9.740573e-01
14708	SNRNP25	1
14709	SNRNP27	1
14710	SNRNP35	1
14711	SNRNP40	1
14712	SNRNP48	4.209951e-01
14713	SNRNP70	5.861997e-01
14714	SNRPA	3.628589e-01
14715	SNRPA1	5.331468e-01
14716	SNRPB	7.890471e-02
14717	SNRPB2	1
14718	SNRPC	1
14719	SNRPD1	4.578641e-02
14720	SNRPD2	1.505499e-01
14721	SNRPD3	1.916915e-01
14722	SNRPE	1
14723	SNRPF	2.564247e-01
14724	SNRPG	1
14725	SNRPN	2.800602e-03
14726	SNTA1	3.610585e-01
14727	SNTB1	1
14728	SNTB2	1
14729	SNTG1	3.449008e-02
14730	SNTG2	3.003065e-03
14731	SNTN	1
14732	SNUPN	1
14733	SNURF	1
14734	SNW1	8.016436e-01
14735	SNX1	5.711630e-01
14736	SNX10	5.252296e-01
14737	SNX11	1
14738	SNX12	3.539400e-01
14739	SNX13	2.785432e-01
14740	SNX14	9.227673e-01
14741	SNX15	3.200955e-01
14742	SNX16	1
14743	SNX17	4.340004e-01
14744	SNX18	5.709330e-01
14745	SNX19	9.687080e-01
14746	SNX2	1
14747	SNX20	3.796752e-01
Done

Running MutSig 2:
Scatter job 163: processing genes 14657 - 14747
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SNAPC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.743342e-02	ci left: 8.274759e-01	ci right 8.421285e-01	k: 8349	n:10000
KS ci ratio: 2.457788e-02	ci left: 7.088662e-01	ci right 7.266068e-01	k: 7178	n:10000
SNAPC4   10000 perm   2 sec   (4217 perm/sec)   p_kst 7.178000e-01   p_cons 8.349000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000163/SNAPC4.9_4498_10000_0.7178_0.8349_1.png
                gene_name: SNAPC4
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 3 percent done.
SMPD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.144643e-01	ci left: 1.289402e-02	ci right 1.779424e-02	k: 152	n:10000
Cons ci ratio: 6.551852e-02	ci left: 2.548856e-01	ci right 2.722523e-01	k: 2635	n:10000
KS ci ratio: 8.347854e-01	ci left: 1.300388e-03	ci right 3.208291e-03	k: 21	n:10000
SMPD4   10000 perm   2 sec   (5233 perm/sec)   p_kst 2.100000e-03   p_cons 2.635000e-01   p_joint 1.520000e-02

Joint ci ratio: 2.146584e-01	ci left: 1.463801e-02	ci right 1.820458e-02	k: 327	n:20000
Cons ci ratio: 4.502301e-02	ci left: 2.686212e-01	ci right 2.810443e-01	k: 5496	n:20000
KS ci ratio: 6.270744e-01	ci left: 1.344893e-03	ci right 2.606975e-03	k: 38	n:20000
SMPD4   20000 perm   4 sec   (4713 perm/sec)   p_kst 1.900000e-03   p_cons 2.748000e-01   p_joint 1.635000e-02

Joint ci ratio: 2.290713e-01	ci left: 8.559072e-03	ci right 1.080409e-02	k: 289	n:30000
Cons ci ratio: 3.677812e-02	ci left: 2.695881e-01	ci right 2.797223e-01	k: 8239	n:30000
KS ci ratio: 5.055551e-01	ci left: 1.497445e-03	ci right 2.536133e-03	k: 59	n:30000
SMPD4   30000 perm   7 sec   (4528 perm/sec)   p_kst 1.966667e-03   p_cons 2.746333e-01   p_joint 9.633333e-03

Joint ci ratio: 2.179107e-01	ci left: 7.150356e-03	ci right 8.922184e-03	k: 320	n:40000
Cons ci ratio: 3.179230e-02	ci left: 2.710013e-01	ci right 2.797813e-01	k: 11015	n:40000
KS ci ratio: 4.222446e-01	ci left: 1.697716e-03	ci right 2.626935e-03	k: 85	n:40000
SMPD4   40000 perm   9 sec   (4398 perm/sec)   p_kst 2.125000e-03   p_cons 2.753750e-01   p_joint 8.000000e-03

Joint ci ratio: 2.106219e-01	ci left: 6.155261e-03	ci right 7.622868e-03	k: 343	n:50000
Cons ci ratio: 2.843449e-02	ci left: 2.714876e-01	ci right 2.793385e-01	k: 13770	n:50000
KS ci ratio: 3.767908e-01	ci left: 1.754103e-03	ci right 2.585394e-03	k: 107	n:50000
SMPD4   50000 perm   12 sec   (4299 perm/sec)   p_kst 2.140000e-03   p_cons 2.754000e-01   p_joint 6.860000e-03

Joint ci ratio: 2.367069e-01	ci left: 4.011562e-03	ci right 5.103879e-03	k: 272	n:60000
Cons ci ratio: 2.712295e-02	ci left: 2.547182e-01	ci right 2.617385e-01	k: 15493	n:60000
KS ci ratio: 3.395274e-01	ci left: 1.841037e-03	ci right 2.608386e-03	k: 132	n:60000
SMPD4   60000 perm   14 sec   (4205 perm/sec)   p_kst 2.200000e-03   p_cons 2.582167e-01   p_joint 4.533333e-03

Joint ci ratio: 2.262132e-01	ci left: 3.788330e-03	ci right 4.767749e-03	k: 298	n:70000
Cons ci ratio: 2.511878e-02	ci left: 2.548613e-01	ci right 2.613588e-01	k: 18067	n:70000
KS ci ratio: 3.105207e-01	ci left: 1.919226e-03	ci right 2.637316e-03	k: 158	n:70000
SMPD4   70000 perm   17 sec   (4123 perm/sec)   p_kst 2.257143e-03   p_cons 2.581000e-01   p_joint 4.257143e-03

Joint ci ratio: 2.330194e-01	ci left: 3.114379e-03	ci right 3.947265e-03	k: 281	n:80000
Cons ci ratio: 2.294730e-02	ci left: 2.641982e-01	ci right 2.703437e-01	k: 21381	n:80000
KS ci ratio: 2.878689e-01	ci left: 1.979970e-03	ci right 2.656932e-03	k: 184	n:80000
SMPD4   80000 perm   20 sec   (4051 perm/sec)   p_kst 2.300000e-03   p_cons 2.672625e-01   p_joint 3.512500e-03

Joint ci ratio: 2.201285e-01	ci left: 3.124689e-03	ci right 3.907849e-03	k: 315	n:90000
Cons ci ratio: 2.167597e-02	ci left: 2.636356e-01	ci right 2.694239e-01	k: 23987	n:90000
KS ci ratio: 2.701884e-01	ci left: 2.018339e-03	ci right 2.658858e-03	k: 209	n:90000
SMPD4   90000 perm   23 sec   (3980 perm/sec)   p_kst 2.322222e-03   p_cons 2.665222e-01   p_joint 3.500000e-03

Joint ci ratio: 2.151047e-01	ci left: 2.954016e-03	ci right 3.675268e-03	k: 330	n:100000
Cons ci ratio: 2.056486e-02	ci left: 2.637615e-01	ci right 2.692520e-01	k: 26650	n:100000
KS ci ratio: 2.543282e-01	ci left: 2.068776e-03	ci right 2.680659e-03	k: 236	n:100000
SMPD4   100000 perm   26 sec   (3913 perm/sec)   p_kst 2.360000e-03   p_cons 2.665000e-01   p_joint 3.300000e-03

Joint ci ratio: 1.552331e-01	ci left: 5.316075e-03	ci right 6.219374e-03	k: 633	n:110000
Cons ci ratio: 1.964167e-02	ci left: 2.632183e-01	ci right 2.684486e-01	k: 29241	n:110000
KS ci ratio: 2.409685e-01	ci left: 2.110943e-03	ci right 2.697603e-03	k: 263	n:110000
SMPD4   110000 perm   29 sec   (3853 perm/sec)   p_kst 2.390909e-03   p_cons 2.658273e-01   p_joint 5.754545e-03

Joint ci ratio: 1.521650e-01	ci left: 5.081355e-03	ci right 5.926146e-03	k: 659	n:120000
Cons ci ratio: 1.839951e-02	ci left: 2.719099e-01	ci right 2.769677e-01	k: 32932	n:120000
KS ci ratio: 2.315171e-01	ci left: 2.107516e-03	ci right 2.666966e-03	k: 285	n:120000
SMPD4   120000 perm   32 sec   (3790 perm/sec)   p_kst 2.375000e-03   p_cons 2.744333e-01   p_joint 5.491667e-03

Joint ci ratio: 1.525462e-01	ci left: 4.668207e-03	ci right 5.446430e-03	k: 656	n:130000
Cons ci ratio: 1.770072e-02	ci left: 2.714923e-01	ci right 2.763485e-01	k: 35609	n:130000
KS ci ratio: 2.249347e-01	ci left: 2.068688e-03	ci right 2.600054e-03	k: 302	n:130000
SMPD4   130000 perm   35 sec   (3731 perm/sec)   p_kst 2.323077e-03   p_cons 2.739154e-01   p_joint 5.046154e-03

Joint ci ratio: 1.502926e-01	ci left: 4.472174e-03	ci right 5.205709e-03	k: 676	n:140000
Cons ci ratio: 1.706304e-02	ci left: 2.714369e-01	ci right 2.761154e-01	k: 38328	n:140000
KS ci ratio: 2.178621e-01	ci left: 2.055860e-03	ci right 2.565104e-03	k: 322	n:140000
SMPD4   140000 perm   38 sec   (3673 perm/sec)   p_kst 2.300000e-03   p_cons 2.737714e-01   p_joint 4.828571e-03

Joint ci ratio: 1.507650e-01	ci left: 4.148314e-03	ci right 4.831058e-03	k: 672	n:150000
Cons ci ratio: 1.647529e-02	ci left: 2.717373e-01	ci right 2.762581e-01	k: 41099	n:150000
KS ci ratio: 2.104966e-01	ci left: 2.063914e-03	ci right 2.555640e-03	k: 345	n:150000
SMPD4   150000 perm   41 sec   (3615 perm/sec)   p_kst 2.300000e-03   p_cons 2.739933e-01   p_joint 4.480000e-03

Joint ci ratio: 1.227724e-01	ci left: 5.942387e-03	ci right 6.725663e-03	k: 1012	n:160000
Cons ci ratio: 1.594412e-02	ci left: 2.720088e-01	ci right 2.763868e-01	k: 43871	n:160000
KS ci ratio: 2.027326e-01	ci left: 2.094944e-03	ci right 2.573375e-03	k: 372	n:160000
SMPD4   160000 perm   45 sec   (3566 perm/sec)   p_kst 2.325000e-03   p_cons 2.741938e-01   p_joint 6.325000e-03

Joint ci ratio: 1.229788e-01	ci left: 5.575665e-03	ci right 6.311925e-03	k: 1009	n:170000
Cons ci ratio: 1.512213e-02	ci left: 2.811470e-01	ci right 2.854368e-01	k: 48159	n:170000
KS ci ratio: 1.938353e-01	ci left: 2.167385e-03	ci right 2.638076e-03	k: 407	n:170000
SMPD4   170000 perm   48 sec   (3515 perm/sec)   p_kst 2.394118e-03   p_cons 2.832882e-01   p_joint 5.935294e-03

Joint ci ratio: 1.168196e-01	ci left: 5.853357e-03	ci right 6.584905e-03	k: 1118	n:180000
Cons ci ratio: 1.470069e-02	ci left: 2.810805e-01	ci right 2.852487e-01	k: 50969	n:180000
KS ci ratio: 1.855955e-01	ci left: 2.242779e-03	ci right 2.706810e-03	k: 444	n:180000
SMPD4   180000 perm   52 sec   (3463 perm/sec)   p_kst 2.466667e-03   p_cons 2.831611e-01   p_joint 6.211111e-03

Joint ci ratio: 1.188314e-01	ci left: 5.356206e-03	ci right 6.037956e-03	k: 1081	n:190000
Cons ci ratio: 1.432618e-02	ci left: 2.806391e-01	ci right 2.846938e-01	k: 53706	n:190000
KS ci ratio: 1.796365e-01	ci left: 2.275420e-03	ci right 2.729445e-03	k: 474	n:190000
SMPD4   190000 perm   56 sec   (3415 perm/sec)   p_kst 2.494737e-03   p_cons 2.826632e-01   p_joint 5.689474e-03

Joint ci ratio: 1.034725e-01	ci left: 6.756171e-03	ci right 7.498222e-03	k: 1424	n:200000
Cons ci ratio: 1.396596e-02	ci left: 2.806174e-01	ci right 2.845690e-01	k: 56518	n:200000
KS ci ratio: 1.752638e-01	ci left: 2.276320e-03	ci right 2.718297e-03	k: 498	n:200000
SMPD4   200000 perm   59 sec   (3368 perm/sec)   p_kst 2.490000e-03   p_cons 2.825900e-01   p_joint 7.120000e-03

Joint ci ratio: 1.033807e-01	ci left: 6.448312e-03	ci right 7.155881e-03	k: 1427	n:210000
Cons ci ratio: 1.363706e-02	ci left: 2.804373e-01	ci right 2.842926e-01	k: 59296	n:210000
KS ci ratio: 1.715247e-01	ci left: 2.268138e-03	ci right 2.698159e-03	k: 520	n:210000
SMPD4   210000 perm   63 sec   (3325 perm/sec)   p_kst 2.476190e-03   p_cons 2.823619e-01   p_joint 6.795238e-03

Joint ci ratio: 1.023912e-01	ci left: 6.279176e-03	ci right 6.961193e-03	k: 1455	n:220000
Cons ci ratio: 1.332512e-02	ci left: 2.804333e-01	ci right 2.841997e-01	k: 62109	n:220000
KS ci ratio: 1.677059e-01	ci left: 2.269501e-03	ci right 2.689233e-03	k: 544	n:220000
SMPD4   220000 perm   67 sec   (3282 perm/sec)   p_kst 2.472727e-03   p_cons 2.823136e-01   p_joint 6.613636e-03

Joint ci ratio: 1.011892e-01	ci left: 6.154448e-03	ci right 6.814603e-03	k: 1490	n:230000
Cons ci ratio: 1.303015e-02	ci left: 2.805391e-01	ci right 2.842229e-01	k: 64947	n:230000
KS ci ratio: 1.638428e-01	ci left: 2.279182e-03	ci right 2.690038e-03	k: 570	n:230000
SMPD4   230000 perm   71 sec   (3241 perm/sec)   p_kst 2.478261e-03   p_cons 2.823783e-01   p_joint 6.478261e-03

Joint ci ratio: 1.021026e-01	ci left: 5.792378e-03	ci right 6.419639e-03	k: 1464	n:240000
Cons ci ratio: 1.277403e-02	ci left: 2.800007e-01	ci right 2.836046e-01	k: 67632	n:240000
KS ci ratio: 1.610483e-01	ci left: 2.264160e-03	ci right 2.664673e-03	k: 590	n:240000
SMPD4   240000 perm   75 sec   (3200 perm/sec)   p_kst 2.458333e-03   p_cons 2.818000e-01   p_joint 6.100000e-03

Joint ci ratio: 1.020101e-01	ci left: 5.572345e-03	ci right 6.175198e-03	k: 1467	n:250000
Cons ci ratio: 1.251954e-02	ci left: 2.799213e-01	ci right 2.834518e-01	k: 70421	n:250000
KS ci ratio: 1.583920e-01	ci left: 2.250395e-03	ci right 2.641283e-03	k: 610	n:250000
SMPD4   250000 perm   79 sec   (3161 perm/sec)   p_kst 2.440000e-03   p_cons 2.816840e-01   p_joint 5.868000e-03

Joint ci ratio: 1.015704e-01	ci left: 5.406727e-03	ci right 5.988990e-03	k: 1480	n:260000
Cons ci ratio: 1.227349e-02	ci left: 2.800521e-01	ci right 2.835143e-01	k: 73263	n:260000
KS ci ratio: 1.546394e-01	ci left: 2.274709e-03	ci right 2.659592e-03	k: 640	n:260000
SMPD4   260000 perm   83 sec   (3121 perm/sec)   p_kst 2.461538e-03   p_cons 2.817808e-01   p_joint 5.692308e-03

Joint ci ratio: 1.038991e-01	ci left: 4.971864e-03	ci right 5.520320e-03	k: 1415	n:270000
Cons ci ratio: 1.204944e-02	ci left: 2.799040e-01	ci right 2.833007e-01	k: 76032	n:270000
KS ci ratio: 1.511415e-01	ci left: 2.297324e-03	ci right 2.676445e-03	k: 670	n:270000
SMPD4   270000 perm   88 sec   (3084 perm/sec)   p_kst 2.481481e-03   p_cons 2.816000e-01   p_joint 5.240741e-03

Joint ci ratio: 1.033964e-01	ci left: 4.842985e-03	ci right 5.374481e-03	k: 1429	n:280000
Cons ci ratio: 1.183023e-02	ci left: 2.800058e-01	ci right 2.833416e-01	k: 78868	n:280000
KS ci ratio: 1.484022e-01	ci left: 2.301216e-03	ci right 2.673486e-03	k: 695	n:280000
SMPD4   280000 perm   92 sec   (3049 perm/sec)   p_kst 2.482143e-03   p_cons 2.816714e-01   p_joint 5.103571e-03

Joint ci ratio: 1.018775e-01	ci left: 4.820452e-03	ci right 5.341238e-03	k: 1472	n:290000
Cons ci ratio: 1.162593e-02	ci left: 2.799841e-01	ci right 2.832616e-01	k: 81670	n:290000
KS ci ratio: 1.462137e-01	ci left: 2.291608e-03	ci right 2.656379e-03	k: 716	n:290000
SMPD4   290000 perm   96 sec   (3012 perm/sec)   p_kst 2.468966e-03   p_cons 2.816207e-01   p_joint 5.075862e-03

Joint ci ratio: 9.110464e-02	ci left: 5.853805e-03	ci right 6.415799e-03	k: 1839	n:300000
Cons ci ratio: 1.142932e-02	ci left: 2.800542e-01	ci right 2.832767e-01	k: 84499	n:300000
KS ci ratio: 1.440216e-01	ci left: 2.285891e-03	ci right 2.643828e-03	k: 738	n:300000
SMPD4   300000 perm   101 sec   (2977 perm/sec)   p_kst 2.460000e-03   p_cons 2.816633e-01   p_joint 6.130000e-03

Joint ci ratio: 8.452465e-02	ci left: 6.598973e-03	ci right 7.184496e-03	k: 2135	n:310000
Cons ci ratio: 1.124577e-02	ci left: 2.799978e-01	ci right 2.831676e-01	k: 87290	n:310000
KS ci ratio: 1.418318e-01	ci left: 2.283693e-03	ci right 2.635389e-03	k: 761	n:310000
SMPD4   310000 perm   105 sec   (2943 perm/sec)   p_kst 2.454839e-03   p_cons 2.815806e-01   p_joint 6.887097e-03

Joint ci ratio: 8.577559e-02	ci left: 6.206135e-03	ci right 6.765359e-03	k: 2074	n:320000
Cons ci ratio: 1.106301e-02	ci left: 2.802292e-01	ci right 2.833497e-01	k: 90172	n:320000
KS ci ratio: 1.392066e-01	ci left: 2.299768e-03	ci right 2.646840e-03	k: 790	n:320000
SMPD4   320000 perm   110 sec   (2909 perm/sec)   p_kst 2.468750e-03   p_cons 2.817875e-01   p_joint 6.481250e-03

Joint ci ratio: 8.510568e-02	ci left: 6.115921e-03	ci right 6.662498e-03	k: 2107	n:330000
Cons ci ratio: 1.090454e-02	ci left: 2.798662e-01	ci right 2.829377e-01	k: 92862	n:330000
KS ci ratio: 1.371417e-01	ci left: 2.300291e-03	ci right 2.641873e-03	k: 814	n:330000
SMPD4   330000 perm   115 sec   (2876 perm/sec)   p_kst 2.466667e-03   p_cons 2.814000e-01   p_joint 6.384848e-03

Joint ci ratio: 8.399826e-02	ci left: 6.097262e-03	ci right 6.634733e-03	k: 2163	n:340000
Cons ci ratio: 1.074626e-02	ci left: 2.797655e-01	ci right 2.827911e-01	k: 95634	n:340000
KS ci ratio: 1.303483e-01	ci left: 2.479976e-03	ci right 2.828587e-03	k: 901	n:340000
SMPD4   340000 perm   120 sec   (2845 perm/sec)   p_kst 2.650000e-03   p_cons 2.812765e-01   p_joint 6.361765e-03

Joint ci ratio: 8.304599e-02	ci left: 6.062923e-03	ci right 6.591015e-03	k: 2213	n:350000
Cons ci ratio: 1.059012e-02	ci left: 2.798450e-01	ci right 2.828272e-01	k: 98467	n:350000
KS ci ratio: 1.284400e-01	ci left: 2.483766e-03	ci right 2.827408e-03	k: 928	n:350000
SMPD4   350000 perm   124 sec   (2815 perm/sec)   p_kst 2.651429e-03   p_cons 2.813343e-01   p_joint 6.322857e-03

Joint ci ratio: 7.685279e-02	ci left: 6.899154e-03	ci right 7.453267e-03	k: 2582	n:360000
Cons ci ratio: 1.044260e-02	ci left: 2.798427e-01	ci right 2.827830e-01	k: 101272	n:360000
KS ci ratio: 1.254993e-01	ci left: 2.533116e-03	ci right 2.874966e-03	k: 972	n:360000
SMPD4   360000 perm   129 sec   (2786 perm/sec)   p_kst 2.700000e-03   p_cons 2.813111e-01   p_joint 7.172222e-03

Joint ci ratio: 7.768224e-02	ci left: 6.569521e-03	ci right 7.103111e-03	k: 2528	n:370000
Cons ci ratio: 1.029392e-02	ci left: 2.801214e-01	ci right 2.830225e-01	k: 104181	n:370000
KS ci ratio: 1.243559e-01	ci left: 2.511780e-03	ci right 2.847435e-03	k: 990	n:370000
SMPD4   370000 perm   134 sec   (2754 perm/sec)   p_kst 2.675676e-03   p_cons 2.815703e-01   p_joint 6.832432e-03

Joint ci ratio: 7.685243e-02	ci left: 6.538575e-03	ci right 7.063725e-03	k: 2583	n:380000
Cons ci ratio: 1.016152e-02	ci left: 2.799837e-01	ci right 2.828459e-01	k: 106937	n:380000
KS ci ratio: 1.228167e-01	ci left: 2.509436e-03	ci right 2.840325e-03	k: 1015	n:380000
SMPD4   380000 perm   139 sec   (2724 perm/sec)   p_kst 2.671053e-03   p_cons 2.814132e-01   p_joint 6.797368e-03

Joint ci ratio: 7.586075e-02	ci left: 6.541950e-03	ci right 7.060291e-03	k: 2651	n:390000
Cons ci ratio: 1.003289e-02	ci left: 2.799020e-01	ci right 2.827269e-01	k: 109712	n:390000
KS ci ratio: 1.213917e-01	ci left: 2.504750e-03	ci right 2.830914e-03	k: 1039	n:390000
SMPD4   390000 perm   145 sec   (2696 perm/sec)   p_kst 2.664103e-03   p_cons 2.813128e-01   p_joint 6.797436e-03

Joint ci ratio: 7.592490e-02	ci left: 6.368569e-03	ci right 6.873618e-03	k: 2647	n:400000
Cons ci ratio: 9.903266e-03	ci left: 2.800592e-01	ci right 2.828490e-01	k: 112581	n:400000
KS ci ratio: 1.197897e-01	ci left: 2.510020e-03	ci right 2.832251e-03	k: 1067	n:400000
SMPD4   400000 perm   150 sec   (2670 perm/sec)   p_kst 2.667500e-03   p_cons 2.814525e-01   p_joint 6.617500e-03

Joint ci ratio: 8.087390e-02	ci left: 5.467062e-03	ci right 5.930209e-03	k: 2335	n:410000
Cons ci ratio: 1.000047e-02	ci left: 2.712325e-01	ci right 2.739610e-01	k: 111764	n:410000
KS ci ratio: 1.179799e-01	ci left: 2.526896e-03	ci right 2.846051e-03	k: 1100	n:410000
SMPD4   410000 perm   155 sec   (2642 perm/sec)   p_kst 2.682927e-03   p_cons 2.725951e-01   p_joint 5.695122e-03

Joint ci ratio: 8.036213e-02	ci left: 5.406876e-03	ci right 5.861890e-03	k: 2365	n:420000
Cons ci ratio: 9.882122e-03	ci left: 2.711919e-01	ci right 2.738875e-01	k: 114466	n:420000
KS ci ratio: 1.166631e-01	ci left: 2.524509e-03	ci right 2.839558e-03	k: 1125	n:420000
SMPD4   420000 perm   161 sec   (2615 perm/sec)   p_kst 2.678571e-03   p_cons 2.725381e-01   p_joint 5.630952e-03

Joint ci ratio: 7.952682e-02	ci left: 5.395088e-03	ci right 5.844172e-03	k: 2415	n:430000
Cons ci ratio: 9.764156e-03	ci left: 2.713042e-01	ci right 2.739686e-01	k: 117233	n:430000
KS ci ratio: 1.154900e-01	ci left: 2.517734e-03	ci right 2.828563e-03	k: 1148	n:430000
SMPD4   430000 perm   166 sec   (2589 perm/sec)   p_kst 2.669767e-03   p_cons 2.726349e-01   p_joint 5.616279e-03

Joint ci ratio: 7.887801e-02	ci left: 5.361577e-03	ci right 5.804063e-03	k: 2455	n:440000
Cons ci ratio: 9.649099e-03	ci left: 2.714616e-01	ci right 2.740959e-01	k: 120022	n:440000
KS ci ratio: 1.141565e-01	ci left: 2.520114e-03	ci right 2.827402e-03	k: 1175	n:440000
SMPD4   440000 perm   172 sec   (2562 perm/sec)   p_kst 2.670455e-03   p_cons 2.727773e-01   p_joint 5.579545e-03

Joint ci ratio: 7.499048e-02	ci left: 5.809148e-03	ci right 6.263914e-03	k: 2715	n:450000
Cons ci ratio: 9.546888e-03	ci left: 2.712438e-01	ci right 2.738480e-01	k: 122645	n:450000
KS ci ratio: 1.127273e-01	ci left: 2.528887e-03	ci right 2.833128e-03	k: 1205	n:450000
SMPD4   450000 perm   177 sec   (2536 perm/sec)   p_kst 2.677778e-03   p_cons 2.725444e-01   p_joint 6.033333e-03

Joint ci ratio: 7.561402e-02	ci left: 5.588987e-03	ci right 6.030316e-03	k: 2671	n:460000
Cons ci ratio: 9.442727e-03	ci left: 2.712506e-01	ci right 2.738262e-01	k: 125367	n:460000
KS ci ratio: 1.118049e-01	ci left: 2.516168e-03	ci right 2.816238e-03	k: 1225	n:460000
SMPD4   460000 perm   183 sec   (2512 perm/sec)   p_kst 2.663043e-03   p_cons 2.725370e-01   p_joint 5.806522e-03

Joint ci ratio: 7.494468e-02	ci left: 5.570276e-03	ci right 6.006063e-03	k: 2719	n:470000
Cons ci ratio: 9.340799e-03	ci left: 2.713039e-01	ci right 2.738521e-01	k: 128111	n:470000
KS ci ratio: 1.101976e-01	ci left: 2.537103e-03	ci right 2.835038e-03	k: 1261	n:470000
SMPD4   470000 perm   189 sec   (2488 perm/sec)   p_kst 2.682979e-03   p_cons 2.725766e-01   p_joint 5.785106e-03

Joint ci ratio: 6.904330e-02	ci left: 6.440442e-03	ci right 6.903043e-03	k: 3201	n:480000
Cons ci ratio: 9.241666e-03	ci left: 2.713739e-01	ci right 2.738955e-01	k: 130864	n:480000
KS ci ratio: 1.092500e-01	ci left: 2.528822e-03	ci right 2.823066e-03	k: 1283	n:480000
SMPD4   480000 perm   195 sec   (2464 perm/sec)   p_kst 2.672917e-03   p_cons 2.726333e-01   p_joint 6.668750e-03

Joint ci ratio: 6.959711e-02	ci left: 6.208706e-03	ci right 6.658384e-03	k: 3151	n:490000
Cons ci ratio: 9.148071e-03	ci left: 2.713352e-01	ci right 2.738308e-01	k: 133565	n:490000
KS ci ratio: 1.081605e-01	ci left: 2.528831e-03	ci right 2.819956e-03	k: 1309	n:490000
SMPD4   490000 perm   201 sec   (2440 perm/sec)   p_kst 2.671429e-03   p_cons 2.725816e-01   p_joint 6.430612e-03

Joint ci ratio: 6.890114e-02	ci left: 6.210316e-03	ci right 6.655433e-03	k: 3215	n:500000
Cons ci ratio: 9.056395e-03	ci left: 2.713361e-01	ci right 2.738065e-01	k: 136285	n:500000
KS ci ratio: 1.068626e-01	ci left: 2.540535e-03	ci right 2.829276e-03	k: 1341	n:500000
SMPD4   500000 perm   207 sec   (2417 perm/sec)   p_kst 2.682000e-03   p_cons 2.725700e-01   p_joint 6.430000e-03

Joint ci ratio: 6.830954e-02	ci left: 6.196464e-03	ci right 6.636623e-03	k: 3271	n:510000
Cons ci ratio: 8.967421e-03	ci left: 2.713371e-01	ci right 2.737832e-01	k: 139005	n:510000
KS ci ratio: 1.058423e-01	ci left: 2.540345e-03	ci right 2.826136e-03	k: 1367	n:510000
SMPD4   510000 perm   213 sec   (2394 perm/sec)   p_kst 2.680392e-03   p_cons 2.725588e-01   p_joint 6.413725e-03

Joint ci ratio: 6.576293e-02	ci left: 6.563289e-03	ci right 7.011463e-03	k: 3528	n:520000
Cons ci ratio: 8.879382e-03	ci left: 2.714111e-01	ci right 2.738337e-01	k: 141763	n:520000
KS ci ratio: 1.051157e-01	ci left: 2.527065e-03	ci right 2.809290e-03	k: 1386	n:520000
SMPD4   520000 perm   219 sec   (2372 perm/sec)   p_kst 2.665385e-03   p_cons 2.726212e-01   p_joint 6.784615e-03

Joint ci ratio: 6.508371e-02	ci left: 6.576793e-03	ci right 7.021076e-03	k: 3602	n:530000
Cons ci ratio: 8.793635e-03	ci left: 2.714938e-01	ci right 2.738936e-01	k: 144527	n:530000
KS ci ratio: 1.040335e-01	ci left: 2.532671e-03	ci right 2.812432e-03	k: 1415	n:530000
SMPD4   530000 perm   226 sec   (2350 perm/sec)   p_kst 2.669811e-03   p_cons 2.726925e-01   p_joint 6.796226e-03

Joint ci ratio: 6.101721e-02	ci left: 7.353671e-03	ci right 7.818302e-03	k: 4095	n:540000
Cons ci ratio: 8.710651e-03	ci left: 2.715587e-01	ci right 2.739363e-01	k: 147283	n:540000
KS ci ratio: 1.030198e-01	ci left: 2.536279e-03	ci right 2.813544e-03	k: 1443	n:540000
SMPD4   540000 perm   232 sec   (2328 perm/sec)   p_kst 2.672222e-03   p_cons 2.727463e-01   p_joint 7.583333e-03

Joint ci ratio: 6.051737e-02	ci left: 7.341724e-03	ci right 7.801668e-03	k: 4163	n:550000
Cons ci ratio: 8.631079e-03	ci left: 2.715705e-01	ci right 2.739264e-01	k: 150011	n:550000
KS ci ratio: 1.021744e-01	ci left: 2.532681e-03	ci right 2.807144e-03	k: 1467	n:550000
SMPD4   550000 perm   238 sec   (2306 perm/sec)   p_kst 2.667273e-03   p_cons 2.727473e-01   p_joint 7.569091e-03

Joint ci ratio: 6.119130e-02	ci left: 7.052321e-03	ci right 7.499228e-03	k: 4073	n:560000
Cons ci ratio: 8.552610e-03	ci left: 2.716302e-01	ci right 2.739650e-01	k: 152766	n:560000
KS ci ratio: 1.012815e-01	ci left: 2.532702e-03	ci right 2.804626e-03	k: 1493	n:560000
SMPD4   560000 perm   245 sec   (2286 perm/sec)   p_kst 2.666071e-03   p_cons 2.727964e-01   p_joint 7.273214e-03

Joint ci ratio: 6.071672e-02	ci left: 7.039164e-03	ci right 7.481656e-03	k: 4137	n:570000
Cons ci ratio: 8.293719e-03	ci left: 2.803993e-01	ci right 2.827363e-01	k: 160493	n:570000
KS ci ratio: 1.003455e-01	ci left: 2.536153e-03	ci right 2.805783e-03	k: 1521	n:570000
SMPD4   570000 perm   252 sec   (2265 perm/sec)   p_kst 2.668421e-03   p_cons 2.815667e-01   p_joint 7.257895e-03

Joint ci ratio: 6.044165e-02	ci left: 6.982318e-03	ci right 7.419178e-03	k: 4175	n:580000
Cons ci ratio: 8.221163e-03	ci left: 2.804461e-01	ci right 2.827629e-01	k: 163330	n:580000
KS ci ratio: 9.956378e-02	ci left: 2.532771e-03	ci right 2.799821e-03	k: 1545	n:580000
SMPD4   580000 perm   258 sec   (2245 perm/sec)   p_kst 2.663793e-03   p_cons 2.816034e-01   p_joint 7.198276e-03

Outputting figure to mutsig2_images.part000000000163/SMPD4.8_2681_580000_0.0026638_0.2816_0.0071983.png
                gene_name: SMPD4
               theta_stop: 0.100 
                    nperm: 580000 
                     p_ks: 0.0027 
        ci_ks_bounds_left: 0.0025 
       ci_ks_bounds_right: 0.0028 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.0072 
     ci_joint_bounds_left: 0.0070 
    ci_joint_bounds_right: 0.0074 

Current progress: 5 percent done.
SMYD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.289665e-02	ci left: 3.450184e-01	ci right 3.638665e-01	k: 3544	n:10000
Cons ci ratio: 1.183680e-02	ci left: 9.109059e-01	ci right 9.218501e-01	k: 9165	n:10000
KS ci ratio: 7.662992e-02	ci left: 1.993910e-01	ci right 2.153799e-01	k: 2073	n:10000
SMYD1   10000 perm   2 sec   (5380 perm/sec)   p_kst 2.073000e-01   p_cons 9.165000e-01   p_joint 3.544000e-01

Outputting figure to mutsig2_images.part000000000163/SMYD1.7_1513_10000_0.2073_0.9165_0.3544.png
                gene_name: SMYD1
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 8 percent done.
SNTG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.184154e-01	ci left: 6.884481e-03	ci right 1.061018e-02	k: 86	n:10000
Cons ci ratio: 1.035678e-01	ci left: 1.187734e-01	ci right 1.318457e-01	k: 1252	n:10000
KS ci ratio: 3.805205e-01	ci left: 8.505237e-03	ci right 1.258745e-02	k: 104	n:10000
SNTG2   10000 perm   2 sec   (5432 perm/sec)   p_kst 1.040000e-02   p_cons 1.252000e-01   p_joint 8.600000e-03

Joint ci ratio: 2.016150e-01	ci left: 1.667773e-02	ci right 2.046408e-02	k: 370	n:20000
Cons ci ratio: 7.331842e-02	ci left: 1.204463e-01	ci right 1.296630e-01	k: 2500	n:20000
KS ci ratio: 2.558573e-01	ci left: 1.011552e-02	ci right 1.312898e-02	k: 231	n:20000
SNTG2   20000 perm   4 sec   (4851 perm/sec)   p_kst 1.155000e-02   p_cons 1.250000e-01   p_joint 1.850000e-02

Joint ci ratio: 2.006145e-01	ci left: 1.130517e-02	ci right 1.385719e-02	k: 376	n:30000
Cons ci ratio: 5.933700e-02	ci left: 1.232188e-01	ci right 1.307869e-01	k: 3809	n:30000
KS ci ratio: 2.047805e-01	ci left: 1.083028e-02	ci right 1.333222e-02	k: 361	n:30000
SNTG2   30000 perm   6 sec   (4658 perm/sec)   p_kst 1.203333e-02   p_cons 1.269667e-01   p_joint 1.253333e-02

Joint ci ratio: 1.326984e-01	ci left: 1.993160e-02	ci right 2.278848e-02	k: 853	n:40000
Cons ci ratio: 5.262286e-02	ci left: 1.186100e-01	ci right 1.250451e-01	k: 4872	n:40000
KS ci ratio: 1.785985e-01	ci left: 1.083650e-02	ci right 1.298523e-02	k: 475	n:40000
SNTG2   40000 perm   9 sec   (4533 perm/sec)   p_kst 1.187500e-02   p_cons 1.218000e-01   p_joint 2.132500e-02

Joint ci ratio: 1.219696e-01	ci left: 1.900419e-02	ci right 2.149195e-02	k: 1011	n:50000
Cons ci ratio: 4.501322e-02	ci left: 1.287275e-01	ci right 1.346753e-01	k: 6584	n:50000
KS ci ratio: 1.607031e-01	ci left: 1.081430e-02	ci right 1.272302e-02	k: 587	n:50000
SNTG2   50000 perm   11 sec   (4430 perm/sec)   p_kst 1.174000e-02   p_cons 1.316800e-01   p_joint 2.022000e-02

Joint ci ratio: 1.223025e-01	ci left: 1.580289e-02	ci right 1.787756e-02	k: 1009	n:60000
Cons ci ratio: 4.425344e-02	ci left: 1.130849e-01	ci right 1.182190e-01	k: 6938	n:60000
KS ci ratio: 1.463451e-01	ci left: 1.095130e-02	ci right 1.269640e-02	k: 708	n:60000
SNTG2   60000 perm   14 sec   (4338 perm/sec)   p_kst 1.180000e-02   p_cons 1.156333e-01   p_joint 1.681667e-02

Joint ci ratio: 1.254475e-01	ci left: 1.289347e-02	ci right 1.463290e-02	k: 962	n:70000
Cons ci ratio: 4.097792e-02	ci left: 1.132402e-01	ci right 1.179917e-01	k: 8092	n:70000
KS ci ratio: 1.357526e-01	ci left: 1.097178e-02	ci right 1.258336e-02	k: 823	n:70000
SNTG2   70000 perm   16 sec   (4256 perm/sec)   p_kst 1.175714e-02   p_cons 1.156000e-01   p_joint 1.374286e-02

Joint ci ratio: 1.241934e-01	ci left: 1.153558e-02	ci right 1.307509e-02	k: 983	n:80000
Cons ci ratio: 3.850134e-02	ci left: 1.124996e-01	ci right 1.169284e-01	k: 9176	n:80000
KS ci ratio: 1.274456e-01	ci left: 1.094214e-02	ci right 1.244358e-02	k: 934	n:80000
SNTG2   80000 perm   19 sec   (4146 perm/sec)   p_kst 1.167500e-02   p_cons 1.147000e-01   p_joint 1.228750e-02

Joint ci ratio: 1.254446e-01	ci left: 1.005961e-02	ci right 1.141665e-02	k: 965	n:90000
Cons ci ratio: 3.634144e-02	ci left: 1.123935e-01	ci right 1.165647e-01	k: 10302	n:90000
KS ci ratio: 1.203234e-01	ci left: 1.095378e-02	ci right 1.236684e-02	k: 1048	n:90000
SNTG2   90000 perm   22 sec   (4075 perm/sec)   p_kst 1.164444e-02   p_cons 1.144667e-01   p_joint 1.072222e-02

Joint ci ratio: 1.194769e-01	ci left: 1.001331e-02	ci right 1.129531e-02	k: 1064	n:100000
Cons ci ratio: 3.450169e-02	ci left: 1.123540e-01	ci right 1.163084e-01	k: 11432	n:100000
KS ci ratio: 1.146754e-01	ci left: 1.088724e-02	ci right 1.222132e-02	k: 1154	n:100000
SNTG2   100000 perm   25 sec   (4005 perm/sec)   p_kst 1.154000e-02   p_cons 1.143200e-01   p_joint 1.064000e-02

Joint ci ratio: 1.032048e-01	ci left: 1.227691e-02	ci right 1.362168e-02	k: 1423	n:110000
Cons ci ratio: 3.295128e-02	ci left: 1.121095e-01	ci right 1.158745e-01	k: 12538	n:110000
KS ci ratio: 1.093605e-01	ci left: 1.091367e-02	ci right 1.218501e-02	k: 1269	n:110000
SNTG2   110000 perm   28 sec   (3945 perm/sec)   p_kst 1.153636e-02   p_cons 1.139818e-01   p_joint 1.293636e-02

Joint ci ratio: 9.045737e-02	ci left: 1.471086e-02	ci right 1.611270e-02	k: 1848	n:120000
Cons ci ratio: 3.155224e-02	ci left: 1.121656e-01	ci right 1.157697e-01	k: 13675	n:120000
KS ci ratio: 1.044554e-01	ci left: 1.099371e-02	ci right 1.221340e-02	k: 1391	n:120000
SNTG2   120000 perm   31 sec   (3879 perm/sec)   p_kst 1.159167e-02   p_cons 1.139583e-01   p_joint 1.540000e-02

Joint ci ratio: 8.497084e-02	ci left: 1.542279e-02	ci right 1.679891e-02	k: 2093	n:130000
Cons ci ratio: 3.029096e-02	ci left: 1.123918e-01	ci right 1.158562e-01	k: 14835	n:130000
KS ci ratio: 9.588899e-02	ci left: 1.208332e-02	ci right 1.330779e-02	k: 1649	n:130000
SNTG2   130000 perm   34 sec   (3821 perm/sec)   p_kst 1.268462e-02   p_cons 1.141154e-01   p_joint 1.610000e-02

Outputting figure to mutsig2_images.part000000000163/SNTG2.7_1688_130000_0.012685_0.11412_0.0161.png
                gene_name: SNTG2
               theta_stop: 0.096 
                    nperm: 130000 
                     p_ks: 0.013 
        ci_ks_bounds_left: 0.012 
       ci_ks_bounds_right: 0.013 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.016 
     ci_joint_bounds_left: 0.015 
    ci_joint_bounds_right: 0.017 

Current progress: 11 percent done.
SNAP91
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.400983e-01	ci left: 6.749259e-02	ci right 7.775805e-02	k: 725	n:10000
Cons ci ratio: 2.195183e-01	ci left: 2.750089e-02	ci right 3.437595e-02	k: 308	n:10000
KS ci ratio: 6.626932e-02	ci left: 2.505337e-01	ci right 2.678068e-01	k: 2591	n:10000
SNAP91   10000 perm   2 sec   (5260 perm/sec)   p_kst 2.591000e-01   p_cons 3.080000e-02   p_joint 7.250000e-02

Joint ci ratio: 1.398453e-01	ci left: 3.515098e-02	ci right 4.048447e-02	k: 755	n:20000
Cons ci ratio: 1.509924e-01	ci left: 3.013378e-02	ci right 3.510332e-02	k: 651	n:20000
KS ci ratio: 4.691481e-02	ci left: 2.526413e-01	ci right 2.648290e-01	k: 5174	n:20000
SNAP91   20000 perm   4 sec   (4780 perm/sec)   p_kst 2.587000e-01   p_cons 3.255000e-02   p_joint 3.775000e-02

Joint ci ratio: 9.640418e-02	ci left: 4.970981e-02	ci right 5.477735e-02	k: 1566	n:30000
Cons ci ratio: 1.242743e-01	ci left: 3.010182e-02	ci right 3.412279e-02	k: 962	n:30000
KS ci ratio: 3.810883e-02	ci left: 2.557388e-01	ci right 2.657075e-01	k: 7821	n:30000
SNAP91   30000 perm   7 sec   (4584 perm/sec)   p_kst 2.607000e-01   p_cons 3.206667e-02   p_joint 5.220000e-02

Joint ci ratio: 7.706706e-02	ci left: 5.840401e-02	ci right 6.311001e-02	k: 2429	n:40000
Cons ci ratio: 1.069812e-01	ci left: 3.073506e-02	ci right 3.423324e-02	k: 1298	n:40000
KS ci ratio: 3.311132e-02	ci left: 2.551595e-01	ci right 2.637754e-01	k: 10378	n:40000
SNAP91   40000 perm   9 sec   (4445 perm/sec)   p_kst 2.594500e-01   p_cons 3.245000e-02   p_joint 6.072500e-02

Joint ci ratio: 8.214517e-02	ci left: 4.176783e-02	ci right 4.536540e-02	k: 2177	n:50000
Cons ci ratio: 9.654309e-02	ci left: 3.037688e-02	ci right 3.347778e-02	k: 1595	n:50000
KS ci ratio: 2.961531e-02	ci left: 2.556219e-01	ci right 2.633260e-01	k: 12973	n:50000
SNAP91   50000 perm   12 sec   (4334 perm/sec)   p_kst 2.594600e-01   p_cons 3.190000e-02   p_joint 4.354000e-02

Outputting figure to mutsig2_images.part000000000163/SNAP91.6_2832_50000_0.25946_0.0319_0.04354.png
                gene_name: SNAP91
               theta_stop: 0.097 
                    nperm: 50000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.032 
      ci_cons_bounds_left: 0.030 
     ci_cons_bounds_right: 0.033 
                  p_joint: 0.044 
     ci_joint_bounds_left: 0.042 
    ci_joint_bounds_right: 0.045 

Current progress: 13 percent done.
SNRNP200
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.028637e-02	ci left: 1.513922e-01	ci right 1.658072e-01	k: 1585	n:10000
Cons ci ratio: 2.935912e-02	ci left: 6.311057e-01	ci right 6.500123e-01	k: 6406	n:10000
KS ci ratio: 1.009590e-01	ci left: 1.243474e-01	ci right 1.376684e-01	k: 1309	n:10000
SNRNP200   10000 perm   2 sec   (4279 perm/sec)   p_kst 1.309000e-01   p_cons 6.406000e-01   p_joint 1.585000e-01

Joint ci ratio: 5.791877e-02	ci left: 1.809249e-01	ci right 1.917665e-01	k: 3726	n:20000
Cons ci ratio: 2.056749e-02	ci left: 6.382222e-01	ci right 6.515357e-01	k: 12898	n:20000
KS ci ratio: 7.221701e-02	ci left: 1.237437e-01	ci right 1.330646e-01	k: 2567	n:20000
SNRNP200   20000 perm   5 sec   (3901 perm/sec)   p_kst 1.283500e-01   p_cons 6.449000e-01   p_joint 1.863000e-01

Outputting figure to mutsig2_images.part000000000163/SNRNP200.6_6591_20000_0.12835_0.6449_0.1863.png
                gene_name: SNRNP200
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 16 percent done.
SNIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.161163e-02	ci left: 7.584861e-01	ci right 7.751582e-01	k: 7669	n:10000
Cons ci ratio: 4.547591e-02	ci left: 4.164802e-01	ci right 4.359628e-01	k: 4262	n:10000
KS ci ratio: 2.028428e-02	ci left: 7.806667e-01	ci right 7.967648e-01	k: 7888	n:10000
SNIP1   10000 perm   2 sec   (5912 perm/sec)   p_kst 7.888000e-01   p_cons 4.262000e-01   p_joint 7.669000e-01

Outputting figure to mutsig2_images.part000000000163/SNIP1.5_1207_10000_0.7888_0.4262_0.7669.png
                gene_name: SNIP1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 18 percent done.
SNPH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.592340e-02	ci left: 8.514124e-01	ci right 8.651781e-01	k: 8584	n:10000
Cons ci ratio: 4.155349e-02	ci left: 4.609766e-01	ci right 4.806404e-01	k: 4708	n:10000
KS ci ratio: 4.610433e-02	ci left: 4.098026e-01	ci right 4.292443e-01	k: 4195	n:10000
SNPH   10000 perm   2 sec   (6145 perm/sec)   p_kst 4.195000e-01   p_cons 4.708000e-01   p_joint 8.584000e-01

Outputting figure to mutsig2_images.part000000000163/SNPH.5_1501_10000_0.4195_0.4708_0.8584.png
                gene_name: SNPH
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 21 percent done.
SNRPN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.873320e-02	ci left: 8.063342e-01	ci right 8.216825e-01	k: 8141	n:10000
Cons ci ratio: 3.595726e-02	ci left: 5.331752e-01	ci right 5.527998e-01	k: 5430	n:10000
KS ci ratio: 2.682742e-02	ci left: 6.717631e-01	ci right 6.901314e-01	k: 6810	n:10000
SNRPN   10000 perm   2 sec   (6587 perm/sec)   p_kst 6.810000e-01   p_cons 5.430000e-01   p_joint 8.141000e-01

Outputting figure to mutsig2_images.part000000000163/SNRPN.5_751_10000_0.681_0.543_0.8141.png
                gene_name: SNRPN
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 24 percent done.
SNTG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.658696e-02	ci left: 6.756920e-01	ci right 6.940002e-01	k: 6849	n:10000
KS ci ratio: 2.869935e-02	ci left: 6.415648e-01	ci right 6.603472e-01	k: 6510	n:10000
SNTG1   10000 perm   2 sec   (5754 perm/sec)   p_kst 6.510000e-01   p_cons 6.849000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000163/SNTG1.5_1622_10000_0.651_0.6849_1.png
                gene_name: SNTG1
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 26 percent done.
SNX13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.222034e-02	ci left: 1.775304e-01	ci right 1.928534e-01	k: 1851	n:10000
Cons ci ratio: 1.447756e-01	ci left: 6.333545e-02	ci right 7.331780e-02	k: 682	n:10000
KS ci ratio: 5.679055e-02	ci left: 3.134405e-01	ci right 3.318629e-01	k: 3226	n:10000
SNX13   10000 perm   2 sec   (5207 perm/sec)   p_kst 3.226000e-01   p_cons 6.820000e-02   p_joint 1.851000e-01

Joint ci ratio: 6.091195e-02	ci left: 1.662989e-01	ci right 1.767967e-01	k: 3430	n:20000
Cons ci ratio: 1.024545e-01	ci left: 6.469544e-02	ci right 7.173072e-02	k: 1363	n:20000
KS ci ratio: 4.035074e-02	ci left: 3.140836e-01	ci right 3.270686e-01	k: 6411	n:20000
SNX13   20000 perm   4 sec   (4700 perm/sec)   p_kst 3.205500e-01   p_cons 6.815000e-02   p_joint 1.715000e-01

Joint ci ratio: 5.104197e-02	ci left: 1.600899e-01	ci right 1.685085e-01	k: 4928	n:30000
Cons ci ratio: 8.274648e-02	ci left: 6.671286e-02	ci right 7.250416e-02	k: 2087	n:30000
KS ci ratio: 3.295382e-02	ci left: 3.151870e-01	ci right 3.257811e-01	k: 9614	n:30000
SNX13   30000 perm   7 sec   (4498 perm/sec)   p_kst 3.204667e-01   p_cons 6.956667e-02   p_joint 1.642667e-01

Outputting figure to mutsig2_images.part000000000163/SNX13.5_2978_30000_0.32047_0.069567_0.16427.png
                gene_name: SNX13
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.070 
      ci_cons_bounds_left: 0.067 
     ci_cons_bounds_right: 0.073 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 29 percent done.
SMOX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.385609e-01	ci left: 6.894400e-02	ci right 7.930573e-02	k: 740	n:10000
Cons ci ratio: 8.591465e-02	ci left: 1.648463e-01	ci right 1.797451e-01	k: 1722	n:10000
KS ci ratio: 2.284450e-01	ci left: 2.532660e-02	ci right 3.195180e-02	k: 285	n:10000
SMOX   10000 perm   2 sec   (5802 perm/sec)   p_kst 2.850000e-02   p_cons 1.722000e-01   p_joint 7.400000e-02

Joint ci ratio: 2.586925e-01	ci left: 9.881491e-03	ci right 1.286311e-02	k: 226	n:20000
Cons ci ratio: 6.066666e-02	ci left: 1.674349e-01	ci right 1.779604e-01	k: 3453	n:20000
KS ci ratio: 1.616844e-01	ci left: 2.623765e-02	ci right 3.090076e-02	k: 570	n:20000
SMOX   20000 perm   4 sec   (5154 perm/sec)   p_kst 2.850000e-02   p_cons 1.726500e-01   p_joint 1.130000e-02

Joint ci ratio: 1.180231e-01	ci left: 3.336977e-02	ci right 3.758748e-02	k: 1063	n:30000
Cons ci ratio: 4.995447e-02	ci left: 1.660288e-01	ci right 1.745685e-01	k: 5108	n:30000
KS ci ratio: 1.302649e-01	ci left: 2.738837e-02	ci right 3.123684e-02	k: 878	n:30000
SMOX   30000 perm   6 sec   (4895 perm/sec)   p_kst 2.926667e-02   p_cons 1.702667e-01   p_joint 3.543333e-02

Joint ci ratio: 1.369366e-01	ci left: 1.869877e-02	ci right 2.147152e-02	k: 802	n:40000
Cons ci ratio: 4.509356e-02	ci left: 1.553049e-01	ci right 1.624947e-01	k: 6355	n:40000
KS ci ratio: 1.137159e-01	ci left: 2.720712e-02	ci right 3.051175e-02	k: 1153	n:40000
SMOX   40000 perm   8 sec   (4739 perm/sec)   p_kst 2.882500e-02   p_cons 1.588750e-01   p_joint 2.005000e-02

Joint ci ratio: 1.027983e-01	ci left: 2.680541e-02	ci right 2.972970e-02	k: 1412	n:50000
Cons ci ratio: 4.006055e-02	ci left: 1.574907e-01	ci right 1.639487e-01	k: 8035	n:50000
KS ci ratio: 1.020574e-01	ci left: 2.719544e-02	ci right 3.013962e-02	k: 1432	n:50000
SMOX   50000 perm   11 sec   (4614 perm/sec)   p_kst 2.864000e-02   p_cons 1.607000e-01   p_joint 2.824000e-02

Joint ci ratio: 9.405887e-02	ci left: 2.680850e-02	ci right 2.947074e-02	k: 1687	n:60000
Cons ci ratio: 3.659321e-02	ci left: 1.576041e-01	ci right 1.634954e-01	k: 9632	n:60000
KS ci ratio: 9.371667e-02	ci left: 2.700393e-02	ci right 2.967529e-02	k: 1699	n:60000
SMOX   60000 perm   13 sec   (4509 perm/sec)   p_kst 2.831667e-02   p_cons 1.605333e-01   p_joint 2.811667e-02

Outputting figure to mutsig2_images.part000000000163/SMOX.4_1786_60000_0.028317_0.16053_0.028117.png
                gene_name: SMOX
               theta_stop: 0.094 
                    nperm: 60000 
                     p_ks: 0.028 
        ci_ks_bounds_left: 0.027 
       ci_ks_bounds_right: 0.030 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.028 
     ci_joint_bounds_left: 0.027 
    ci_joint_bounds_right: 0.029 

Current progress: 32 percent done.
SMPD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.314164e-01	ci left: 7.630693e-02	ci right 8.713821e-02	k: 816	n:10000
Cons ci ratio: 1.698901e-02	ci left: 8.346000e-01	ci right 8.490003e-01	k: 8419	n:10000
KS ci ratio: 2.309509e-01	ci left: 2.476030e-02	ci right 3.131851e-02	k: 279	n:10000
SMPD1   10000 perm   2 sec   (5758 perm/sec)   p_kst 2.790000e-02   p_cons 8.419000e-01   p_joint 8.160000e-02

Joint ci ratio: 1.079048e-01	ci left: 5.855047e-02	ci right 6.527759e-02	k: 1237	n:20000
Cons ci ratio: 1.218339e-02	ci left: 8.329208e-01	ci right 8.431807e-01	k: 16762	n:20000
KS ci ratio: 1.612488e-01	ci left: 2.638175e-02	ci right 3.105661e-02	k: 573	n:20000
SMPD1   20000 perm   4 sec   (5156 perm/sec)   p_kst 2.865000e-02   p_cons 8.381000e-01   p_joint 6.185000e-02

Joint ci ratio: 8.703532e-02	ci left: 6.057029e-02	ci right 6.611464e-02	k: 1899	n:30000
Cons ci ratio: 9.879035e-03	ci left: 8.357683e-01	ci right 8.440991e-01	k: 25199	n:30000
KS ci ratio: 1.346691e-01	ci left: 2.561418e-02	ci right 2.934475e-02	k: 823	n:30000
SMPD1   30000 perm   6 sec   (4896 perm/sec)   p_kst 2.743333e-02   p_cons 8.399667e-01   p_joint 6.330000e-02

Joint ci ratio: 7.322788e-02	ci left: 6.439681e-02	ci right 6.931630e-02	k: 2673	n:40000
Cons ci ratio: 8.277442e-03	ci left: 8.451001e-01	ci right 8.521493e-01	k: 33946	n:40000
KS ci ratio: 1.169928e-01	ci left: 2.570066e-02	ci right 2.891846e-02	k: 1091	n:40000
SMPD1   40000 perm   8 sec   (4753 perm/sec)   p_kst 2.727500e-02   p_cons 8.486500e-01   p_joint 6.682500e-02

Joint ci ratio: 7.245721e-02	ci left: 5.329278e-02	ci right 5.731904e-02	k: 2764	n:50000
Cons ci ratio: 7.399201e-03	ci left: 8.456297e-01	ci right 8.519298e-01	k: 42440	n:50000
KS ci ratio: 1.042498e-01	ci left: 2.606457e-02	ci right 2.895064e-02	k: 1374	n:50000
SMPD1   50000 perm   11 sec   (4639 perm/sec)   p_kst 2.748000e-02   p_cons 8.488000e-01   p_joint 5.528000e-02

Joint ci ratio: 6.452344e-02	ci left: 5.607712e-02	ci right 5.983244e-02	k: 3476	n:60000
Cons ci ratio: 6.740010e-03	ci left: 8.464626e-01	ci right 8.522036e-01	k: 50961	n:60000
KS ci ratio: 9.420253e-02	ci left: 2.672707e-02	ci right 2.938551e-02	k: 1682	n:60000
SMPD1   60000 perm   13 sec   (4525 perm/sec)   p_kst 2.803333e-02   p_cons 8.493500e-01   p_joint 5.793333e-02

Outputting figure to mutsig2_images.part000000000163/SMPD1.4_1960_60000_0.028033_0.84935_0.057933.png
                gene_name: SMPD1
               theta_stop: 0.094 
                    nperm: 60000 
                     p_ks: 0.028 
        ci_ks_bounds_left: 0.027 
       ci_ks_bounds_right: 0.029 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.058 
     ci_joint_bounds_left: 0.056 
    ci_joint_bounds_right: 0.060 

Current progress: 34 percent done.
SNAI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.023926e-01	ci left: 7.512676e-03	ci right 1.138119e-02	k: 93	n:10000
Cons ci ratio: 2.183513e-02	ci left: 7.547419e-01	ci right 7.715046e-01	k: 7632	n:10000
KS ci ratio: 1.306013e+00	ci left: 3.454445e-04	ci right 1.575707e-03	k: 8	n:10000
SNAI1   10000 perm   2 sec   (6077 perm/sec)   p_kst 8.000000e-04   p_cons 7.632000e-01   p_joint 9.300000e-03

Joint ci ratio: 3.779363e-01	ci left: 4.341185e-03	ci right 6.406636e-03	k: 106	n:20000
Cons ci ratio: 1.546329e-02	ci left: 7.566906e-01	ci right 7.685329e-01	k: 15253	n:20000
KS ci ratio: 9.503118e-01	ci left: 4.573361e-04	ci right 1.298826e-03	k: 16	n:20000
SNAI1   20000 perm   4 sec   (5519 perm/sec)   p_kst 8.000000e-04   p_cons 7.626500e-01   p_joint 5.300000e-03

Joint ci ratio: 4.172532e-01	ci left: 2.323413e-03	ci right 3.575928e-03	k: 87	n:30000
Cons ci ratio: 1.269721e-02	ci left: 7.557296e-01	ci right 7.654199e-01	k: 22818	n:30000
KS ci ratio: 7.153210e-01	ci left: 6.474844e-04	ci right 1.388002e-03	k: 29	n:30000
SNAI1   30000 perm   6 sec   (5286 perm/sec)   p_kst 9.666667e-04   p_cons 7.606000e-01   p_joint 2.900000e-03

Joint ci ratio: 2.476424e-01	ci left: 5.454280e-03	ci right 7.018704e-03	k: 248	n:40000
Cons ci ratio: 1.094856e-02	ci left: 7.579713e-01	ci right 7.663406e-01	k: 30487	n:40000
KS ci ratio: 5.974655e-01	ci left: 7.568492e-04	ci right 1.419033e-03	k: 42	n:40000
SNAI1   40000 perm   8 sec   (5114 perm/sec)   p_kst 1.050000e-03   p_cons 7.621750e-01   p_joint 6.200000e-03

Joint ci ratio: 2.508538e-01	ci left: 4.250575e-03	ci right 5.487988e-03	k: 242	n:50000
Cons ci ratio: 9.769865e-03	ci left: 7.592676e-01	ci right 7.667419e-01	k: 38151	n:50000
KS ci ratio: 5.235334e-01	ci left: 8.287747e-04	ci right 1.431564e-03	k: 55	n:50000
SNAI1   50000 perm   10 sec   (4983 perm/sec)   p_kst 1.100000e-03   p_cons 7.630200e-01   p_joint 4.840000e-03

Joint ci ratio: 1.648740e-01	ci left: 8.563417e-03	ci right 1.011793e-02	k: 559	n:60000
Cons ci ratio: 8.924463e-03	ci left: 7.593587e-01	ci right 7.661826e-01	k: 45767	n:60000
KS ci ratio: 4.859487e-01	ci left: 8.215572e-04	ci right 1.361908e-03	k: 64	n:60000
SNAI1   60000 perm   12 sec   (4870 perm/sec)   p_kst 1.066667e-03   p_cons 7.627833e-01   p_joint 9.316667e-03

Joint ci ratio: 1.654324e-01	ci left: 7.298584e-03	ci right 8.628403e-03	k: 556	n:70000
Cons ci ratio: 8.255545e-03	ci left: 7.599179e-01	ci right 7.662317e-01	k: 53416	n:70000
KS ci ratio: 4.494075e-01	ci left: 8.428369e-04	ci right 1.342863e-03	k: 75	n:70000
SNAI1   70000 perm   15 sec   (4756 perm/sec)   p_kst 1.071429e-03   p_cons 7.630857e-01   p_joint 7.942857e-03

Joint ci ratio: 2.521272e-01	ci left: 2.632897e-03	ci right 3.403844e-03	k: 240	n:80000
Cons ci ratio: 7.718847e-03	ci left: 7.602886e-01	ci right 7.661923e-01	k: 61060	n:80000
KS ci ratio: 4.326670e-01	ci left: 8.041499e-04	ci right 1.258290e-03	k: 81	n:80000
SNAI1   80000 perm   17 sec   (4663 perm/sec)   p_kst 1.012500e-03   p_cons 7.632500e-01   p_joint 3.000000e-03

Joint ci ratio: 1.831042e-01	ci left: 4.602660e-03	ci right 5.540787e-03	k: 455	n:90000
Cons ci ratio: 7.277287e-03	ci left: 7.604644e-01	ci right 7.660298e-01	k: 68693	n:90000
KS ci ratio: 4.084770e-01	ci left: 8.141593e-04	ci right 1.241277e-03	k: 91	n:90000
SNAI1   90000 perm   20 sec   (4574 perm/sec)   p_kst 1.011111e-03   p_cons 7.632556e-01   p_joint 5.055556e-03

Joint ci ratio: 1.841680e-01	ci left: 4.094592e-03	ci right 4.934546e-03	k: 450	n:100000
Cons ci ratio: 6.911588e-03	ci left: 7.602012e-01	ci right 7.654836e-01	k: 76285	n:100000
KS ci ratio: 3.898556e-01	ci left: 8.137117e-04	ci right 1.216136e-03	k: 100	n:100000
SNAI1   100000 perm   22 sec   (4489 perm/sec)   p_kst 1.000000e-03   p_cons 7.628500e-01   p_joint 4.500000e-03

Joint ci ratio: 1.516650e-01	ci left: 5.578387e-03	ci right 6.502494e-03	k: 663	n:110000
Cons ci ratio: 6.575453e-03	ci left: 7.611234e-01	ci right 7.661536e-01	k: 84001	n:110000
KS ci ratio: 3.702149e-01	ci left: 8.301917e-04	ci right 1.215080e-03	k: 111	n:110000
SNAI1   110000 perm   25 sec   (4408 perm/sec)   p_kst 1.009091e-03   p_cons 7.636455e-01   p_joint 6.027273e-03

Joint ci ratio: 1.467825e-01	ci left: 5.474499e-03	ci right 6.349638e-03	k: 708	n:120000
Cons ci ratio: 6.297036e-03	ci left: 7.611438e-01	ci right 7.659601e-01	k: 91627	n:120000
KS ci ratio: 3.490365e-01	ci left: 8.671463e-04	ci right 1.240975e-03	k: 125	n:120000
SNAI1   120000 perm   28 sec   (4333 perm/sec)   p_kst 1.041667e-03   p_cons 7.635583e-01   p_joint 5.900000e-03

Joint ci ratio: 1.411243e-01	ci left: 5.483473e-03	ci right 6.323412e-03	k: 766	n:130000
Cons ci ratio: 6.056516e-03	ci left: 7.608485e-01	ci right 7.654782e-01	k: 99212	n:130000
KS ci ratio: 3.335141e-01	ci left: 8.848448e-04	ci right 1.245699e-03	k: 137	n:130000
SNAI1   130000 perm   31 sec   (4259 perm/sec)   p_kst 1.053846e-03   p_cons 7.631692e-01   p_joint 5.892308e-03

Joint ci ratio: 1.365742e-01	ci left: 5.450317e-03	ci right 6.256070e-03	k: 818	n:140000
Cons ci ratio: 5.831672e-03	ci left: 7.612149e-01	ci right 7.656742e-01	k: 106883	n:140000
KS ci ratio: 3.198940e-01	ci left: 9.003303e-04	ci right 1.249436e-03	k: 149	n:140000
SNAI1   140000 perm   33 sec   (4187 perm/sec)   p_kst 1.064286e-03   p_cons 7.634500e-01   p_joint 5.842857e-03

Joint ci ratio: 1.410878e-01	ci left: 4.758648e-03	ci right 5.487349e-03	k: 767	n:150000
Cons ci ratio: 5.636374e-03	ci left: 7.611339e-01	ci right 7.654426e-01	k: 114494	n:150000
KS ci ratio: 3.311447e-01	ci left: 7.790789e-04	ci right 1.094060e-03	k: 139	n:150000
SNAI1   150000 perm   36 sec   (4118 perm/sec)   p_kst 9.266667e-04   p_cons 7.632933e-01   p_joint 5.113333e-03

Joint ci ratio: 1.429935e-01	ci left: 4.340607e-03	ci right 5.015035e-03	k: 747	n:160000
Cons ci ratio: 5.463147e-03	ci left: 7.608207e-01	ci right 7.649948e-01	k: 122066	n:160000
KS ci ratio: 3.253897e-01	ci left: 7.590600e-04	ci right 1.059500e-03	k: 144	n:160000
SNAI1   160000 perm   39 sec   (4054 perm/sec)   p_kst 9.000000e-04   p_cons 7.629125e-01   p_joint 4.668750e-03

Joint ci ratio: 1.494730e-01	ci left: 3.728152e-03	ci right 4.336012e-03	k: 684	n:170000
Cons ci ratio: 5.300473e-03	ci left: 7.608532e-01	ci right 7.649026e-01	k: 129690	n:170000
KS ci ratio: 3.178109e-01	ci left: 7.522621e-04	ci right 1.041666e-03	k: 151	n:170000
SNAI1   170000 perm   43 sec   (3988 perm/sec)   p_kst 8.882353e-04   p_cons 7.628824e-01   p_joint 4.023529e-03

Joint ci ratio: 1.472411e-01	ci left: 3.633355e-03	ci right 4.216134e-03	k: 705	n:180000
Cons ci ratio: 5.149301e-03	ci left: 7.610397e-01	ci right 7.649741e-01	k: 137342	n:180000
KS ci ratio: 3.107380e-01	ci left: 7.462916e-04	ci right 1.025742e-03	k: 158	n:180000
SNAI1   180000 perm   46 sec   (3922 perm/sec)   p_kst 8.777778e-04   p_cons 7.630111e-01   p_joint 3.916667e-03

Joint ci ratio: 1.434321e-01	ci left: 3.634854e-03	ci right 4.201500e-03	k: 743	n:190000
Cons ci ratio: 5.008906e-03	ci left: 7.613135e-01	ci right 7.651416e-01	k: 145014	n:190000
KS ci ratio: 3.005150e-01	ci left: 7.604704e-04	ci right 1.034075e-03	k: 169	n:190000
SNAI1   190000 perm   49 sec   (3861 perm/sec)   p_kst 8.894737e-04   p_cons 7.632316e-01   p_joint 3.910526e-03

Joint ci ratio: 1.396356e-01	ci left: 3.650855e-03	ci right 4.203676e-03	k: 784	n:200000
Cons ci ratio: 4.880073e-03	ci left: 7.615110e-01	ci right 7.652413e-01	k: 152676	n:200000
KS ci ratio: 2.953503e-01	ci left: 7.502043e-04	ci right 1.014608e-03	k: 175	n:200000
SNAI1   200000 perm   53 sec   (3801 perm/sec)   p_kst 8.750000e-04   p_cons 7.633800e-01   p_joint 3.920000e-03

Joint ci ratio: 1.462470e-01	ci left: 3.160118e-03	ci right 3.663267e-03	k: 715	n:210000
Cons ci ratio: 4.758433e-03	ci left: 7.618628e-01	ci right 7.655014e-01	k: 160374	n:210000
KS ci ratio: 2.896478e-01	ci left: 7.453680e-04	ci right 1.002065e-03	k: 182	n:210000
SNAI1   210000 perm   56 sec   (3744 perm/sec)   p_kst 8.666667e-04   p_cons 7.636857e-01   p_joint 3.404762e-03

Joint ci ratio: 1.502031e-01	ci left: 2.854497e-03	ci right 3.322383e-03	k: 678	n:220000
Cons ci ratio: 4.650251e-03	ci left: 7.618098e-01	ci right 7.653651e-01	k: 167990	n:220000
KS ci ratio: 2.842632e-01	ci left: 7.410159e-04	ci right 9.906192e-04	k: 189	n:220000
SNAI1   220000 perm   60 sec   (3686 perm/sec)   p_kst 8.590909e-04   p_cons 7.635909e-01   p_joint 3.081818e-03

Joint ci ratio: 1.197273e-01	ci left: 4.361285e-03	ci right 4.920876e-03	k: 1066	n:230000
Cons ci ratio: 4.545456e-03	ci left: 7.620543e-01	ci right 7.655304e-01	k: 175673	n:230000
KS ci ratio: 2.770647e-01	ci left: 7.492170e-04	ci right 9.940783e-04	k: 199	n:230000
SNAI1   230000 perm   63 sec   (3632 perm/sec)   p_kst 8.652174e-04   p_cons 7.637957e-01   p_joint 4.634783e-03

Joint ci ratio: 1.171215e-01	ci left: 4.373642e-03	ci right 4.921759e-03	k: 1114	n:240000
Cons ci ratio: 4.450622e-03	ci left: 7.620202e-01	ci right 7.654234e-01	k: 183294	n:240000
KS ci ratio: 2.691072e-01	ci left: 7.645778e-04	ci right 1.006072e-03	k: 211	n:240000
SNAI1   240000 perm   67 sec   (3577 perm/sec)   p_kst 8.791667e-04   p_cons 7.637250e-01   p_joint 4.641667e-03

Joint ci ratio: 1.152275e-01	ci left: 4.342392e-03	ci right 4.877193e-03	k: 1151	n:250000
Cons ci ratio: 4.358926e-03	ci left: 7.622021e-01	ci right 7.655357e-01	k: 190968	n:250000
KS ci ratio: 2.617981e-01	ci left: 7.788019e-04	ci right 1.017014e-03	k: 223	n:250000
SNAI1   250000 perm   71 sec   (3526 perm/sec)   p_kst 8.920000e-04   p_cons 7.638720e-01   p_joint 4.604000e-03

Joint ci ratio: 1.129463e-01	ci left: 4.350989e-03	ci right 4.875533e-03	k: 1198	n:260000
Cons ci ratio: 4.270301e-03	ci left: 7.625712e-01	ci right 7.658383e-01	k: 198694	n:260000
KS ci ratio: 2.566922e-01	ci left: 7.812144e-04	ci right 1.014758e-03	k: 232	n:260000
SNAI1   260000 perm   75 sec   (3479 perm/sec)   p_kst 8.923077e-04   p_cons 7.642077e-01   p_joint 4.607692e-03

Joint ci ratio: 1.113353e-01	ci left: 4.315830e-03	ci right 4.828227e-03	k: 1233	n:270000
Cons ci ratio: 4.189057e-03	ci left: 7.627241e-01	ci right 7.659295e-01	k: 206369	n:270000
KS ci ratio: 2.493091e-01	ci left: 8.008464e-04	ci right 1.032305e-03	k: 246	n:270000
SNAI1   270000 perm   79 sec   (3433 perm/sec)   p_kst 9.111111e-04   p_cons 7.643296e-01   p_joint 4.566667e-03

Joint ci ratio: 1.190513e-01	ci left: 3.627445e-03	ci right 4.090061e-03	k: 1079	n:280000
Cons ci ratio: 4.113544e-03	ci left: 7.627556e-01	ci right 7.659032e-01	k: 214013	n:280000
KS ci ratio: 2.444102e-01	ci left: 8.057502e-04	ci right 1.033356e-03	k: 256	n:280000
SNAI1   280000 perm   83 sec   (3388 perm/sec)   p_kst 9.142857e-04   p_cons 7.643321e-01   p_joint 3.853571e-03

Joint ci ratio: 1.192812e-01	ci left: 3.488963e-03	ci right 3.934838e-03	k: 1075	n:290000
Cons ci ratio: 4.045028e-03	ci left: 7.625124e-01	ci right 7.656064e-01	k: 221578	n:290000
KS ci ratio: 2.411491e-01	ci left: 8.006350e-04	ci right 1.023326e-03	k: 263	n:290000
SNAI1   290000 perm   87 sec   (3345 perm/sec)   p_kst 9.068966e-04   p_cons 7.640621e-01   p_joint 3.706897e-03

Joint ci ratio: 1.173877e-01	ci left: 3.485878e-03	ci right 3.923796e-03	k: 1110	n:300000
Cons ci ratio: 3.977725e-03	ci left: 7.624763e-01	ci right 7.655186e-01	k: 229200	n:300000
KS ci ratio: 2.375767e-01	ci left: 7.990146e-04	ci right 1.017479e-03	k: 271	n:300000
SNAI1   300000 perm   91 sec   (3302 perm/sec)   p_kst 9.033333e-04   p_cons 7.640000e-01   p_joint 3.700000e-03

Joint ci ratio: 1.204811e-01	ci left: 3.198130e-03	ci right 3.611240e-03	k: 1054	n:310000
Cons ci ratio: 3.912902e-03	ci left: 7.625141e-01	ci right 7.655068e-01	k: 236844	n:310000
KS ci ratio: 2.333260e-01	ci left: 8.035955e-04	ci right 1.018814e-03	k: 281	n:310000
SNAI1   310000 perm   95 sec   (3259 perm/sec)   p_kst 9.064516e-04   p_cons 7.640129e-01   p_joint 3.400000e-03

Joint ci ratio: 1.116938e-01	ci left: 3.620144e-03	ci right 4.051418e-03	k: 1226	n:320000
Cons ci ratio: 3.850247e-03	ci left: 7.626344e-01	ci right 7.655795e-01	k: 244515	n:320000
KS ci ratio: 2.312861e-01	ci left: 7.931983e-04	ci right 1.003509e-03	k: 286	n:320000
SNAI1   320000 perm   99 sec   (3219 perm/sec)   p_kst 8.937500e-04   p_cons 7.641094e-01   p_joint 3.831250e-03

Joint ci ratio: 1.098292e-01	ci left: 3.634191e-03	ci right 4.059443e-03	k: 1268	n:330000
Cons ci ratio: 3.792038e-03	ci left: 7.626021e-01	ci right 7.655024e-01	k: 252138	n:330000
KS ci ratio: 2.269766e-01	ci left: 8.005825e-04	ci right 1.008343e-03	k: 297	n:330000
SNAI1   330000 perm   104 sec   (3178 perm/sec)   p_kst 9.000000e-04   p_cons 7.640545e-01   p_joint 3.842424e-03

Joint ci ratio: 1.213093e-01	ci left: 2.875981e-03	ci right 3.250215e-03	k: 1040	n:340000
Cons ci ratio: 3.737763e-03	ci left: 7.624393e-01	ci right 7.652974e-01	k: 259716	n:340000
KS ci ratio: 2.258447e-01	ci left: 7.853584e-04	ci right 9.880099e-04	k: 300	n:340000
SNAI1   340000 perm   108 sec   (3139 perm/sec)   p_kst 8.823529e-04   p_cons 7.638706e-01   p_joint 3.058824e-03

Joint ci ratio: 1.194865e-01	ci left: 2.882486e-03	ci right 3.251532e-03	k: 1072	n:350000
Cons ci ratio: 3.683474e-03	ci left: 7.625095e-01	ci right 7.653262e-01	k: 267372	n:350000
KS ci ratio: 2.214721e-01	ci left: 7.952851e-04	ci right 9.959837e-04	k: 312	n:350000
SNAI1   350000 perm   113 sec   (3100 perm/sec)   p_kst 8.914286e-04   p_cons 7.639200e-01   p_joint 3.062857e-03

Joint ci ratio: 1.180116e-01	ci left: 2.875188e-03	ci right 3.238439e-03	k: 1099	n:360000
Cons ci ratio: 3.631848e-03	ci left: 7.625398e-01	ci right 7.653170e-01	k: 275015	n:360000
KS ci ratio: 2.180165e-01	ci left: 7.994431e-04	ci right 9.976214e-04	k: 322	n:360000
SNAI1   360000 perm   118 sec   (3063 perm/sec)   p_kst 8.944444e-04   p_cons 7.639306e-01   p_joint 3.052778e-03

Joint ci ratio: 1.164346e-01	ci left: 2.876184e-03	ci right 3.234371e-03	k: 1129	n:370000
Cons ci ratio: 3.580616e-03	ci left: 7.627421e-01	ci right 7.654808e-01	k: 282722	n:370000
KS ci ratio: 2.150411e-01	ci left: 8.008418e-04	ci right 9.963000e-04	k: 331	n:370000
SNAI1   370000 perm   122 sec   (3027 perm/sec)   p_kst 8.945946e-04   p_cons 7.641135e-01   p_joint 3.051351e-03

Joint ci ratio: 1.174867e-01	ci left: 2.749393e-03	ci right 3.095098e-03	k: 1109	n:380000
Cons ci ratio: 3.533321e-03	ci left: 7.627468e-01	ci right 7.654492e-01	k: 290358	n:380000
KS ci ratio: 2.115643e-01	ci left: 8.071684e-04	ci right 1.000573e-03	k: 342	n:380000
SNAI1   380000 perm   127 sec   (2992 perm/sec)   p_kst 9.000000e-04   p_cons 7.641000e-01   p_joint 2.918421e-03

Joint ci ratio: 1.162376e-01	ci left: 2.738634e-03	ci right 3.079074e-03	k: 1133	n:390000
Cons ci ratio: 3.488398e-03	ci left: 7.626949e-01	ci right 7.653627e-01	k: 297972	n:390000
KS ci ratio: 2.097386e-01	ci left: 8.010446e-04	ci right 9.911123e-04	k: 348	n:390000
SNAI1   390000 perm   132 sec   (2957 perm/sec)   p_kst 8.923077e-04   p_cons 7.640308e-01   p_joint 2.905128e-03

Joint ci ratio: 1.142875e-01	ci left: 2.764860e-03	ci right 3.102405e-03	k: 1172	n:400000
Cons ci ratio: 3.444285e-03	ci left: 7.627361e-01	ci right 7.653701e-01	k: 305622	n:400000
KS ci ratio: 2.065089e-01	ci left: 8.070855e-04	ci right 9.952653e-04	k: 359	n:400000
SNAI1   400000 perm   137 sec   (2923 perm/sec)   p_kst 8.975000e-04   p_cons 7.640550e-01   p_joint 2.930000e-03

Joint ci ratio: 1.140481e-01	ci left: 2.709267e-03	ci right 3.039285e-03	k: 1177	n:410000
Cons ci ratio: 3.402311e-03	ci left: 7.627216e-01	ci right 7.653234e-01	k: 313250	n:410000
KS ci ratio: 2.036989e-01	ci left: 8.105383e-04	ci right 9.966316e-04	k: 369	n:410000
SNAI1   410000 perm   142 sec   (2890 perm/sec)   p_kst 9.000000e-04   p_cons 7.640244e-01   p_joint 2.870732e-03

Joint ci ratio: 1.131407e-01	ci left: 2.688711e-03	ci right 3.013446e-03	k: 1196	n:420000
Cons ci ratio: 3.361480e-03	ci left: 7.627462e-01	ci right 7.653168e-01	k: 320894	n:420000
KS ci ratio: 2.015321e-01	ci left: 8.093210e-04	ci right 9.929150e-04	k: 377	n:420000
SNAI1   420000 perm   147 sec   (2859 perm/sec)   p_kst 8.976190e-04   p_cons 7.640333e-01   p_joint 2.847619e-03

Joint ci ratio: 1.115211e-01	ci left: 2.705293e-03	ci right 3.027045e-03	k: 1231	n:430000
Cons ci ratio: 3.321571e-03	ci left: 7.628258e-01	ci right 7.653660e-01	k: 328562	n:430000
KS ci ratio: 1.978994e-01	ci left: 8.214303e-04	ci right 1.004007e-03	k: 391	n:430000
SNAI1   430000 perm   152 sec   (2827 perm/sec)   p_kst 9.093023e-04   p_cons 7.640977e-01   p_joint 2.862791e-03

Joint ci ratio: 1.144006e-01	ci left: 2.509074e-03	ci right 2.815715e-03	k: 1170	n:440000
Cons ci ratio: 3.283215e-03	ci left: 7.628836e-01	ci right 7.653947e-01	k: 336222	n:440000
KS ci ratio: 1.964027e-01	ci left: 8.157244e-04	ci right 9.954979e-04	k: 397	n:440000
SNAI1   440000 perm   157 sec   (2796 perm/sec)   p_kst 9.022727e-04   p_cons 7.641409e-01   p_joint 2.659091e-03

Joint ci ratio: 1.199765e-01	ci left: 2.224643e-03	ci right 2.510714e-03	k: 1064	n:450000
Cons ci ratio: 3.247138e-03	ci left: 7.628300e-01	ci right 7.653132e-01	k: 343833	n:450000
KS ci ratio: 1.946985e-01	ci left: 8.123910e-04	ci right 9.896922e-04	k: 404	n:450000
SNAI1   450000 perm   163 sec   (2765 perm/sec)   p_kst 8.977778e-04   p_cons 7.640733e-01   p_joint 2.364444e-03

Joint ci ratio: 1.190311e-01	ci left: 2.212132e-03	ci right 2.494195e-03	k: 1081	n:460000
Cons ci ratio: 3.209901e-03	ci left: 7.630402e-01	ci right 7.654956e-01	k: 351564	n:460000
KS ci ratio: 1.932727e-01	ci left: 8.071401e-04	ci right 9.818536e-04	k: 410	n:460000
SNAI1   460000 perm   168 sec   (2735 perm/sec)   p_kst 8.913043e-04   p_cons 7.642696e-01   p_joint 2.350000e-03

Joint ci ratio: 1.188691e-01	ci left: 2.171256e-03	ci right 2.447703e-03	k: 1084	n:470000
Cons ci ratio: 3.174833e-03	ci left: 7.631372e-01	ci right 7.655659e-01	k: 359246	n:470000
KS ci ratio: 1.905109e-01	ci left: 8.142726e-04	ci right 9.877197e-04	k: 422	n:470000
SNAI1   470000 perm   174 sec   (2707 perm/sec)   p_kst 8.978723e-04   p_cons 7.643532e-01   p_joint 2.306383e-03

Joint ci ratio: 1.158605e-01	ci left: 2.241290e-03	ci right 2.518938e-03	k: 1141	n:480000
Cons ci ratio: 3.139798e-03	ci left: 7.633554e-01	ci right 7.657580e-01	k: 366988	n:480000
KS ci ratio: 1.876485e-01	ci left: 8.231104e-04	ci right 9.955056e-04	k: 435	n:480000
SNAI1   480000 perm   179 sec   (2678 perm/sec)   p_kst 9.062500e-04   p_cons 7.645583e-01   p_joint 2.377083e-03

Joint ci ratio: 1.130691e-01	ci left: 2.308550e-03	ci right 2.587181e-03	k: 1198	n:490000
Cons ci ratio: 3.107922e-03	ci left: 7.633298e-01	ci right 7.657079e-01	k: 374615	n:490000
KS ci ratio: 1.857412e-01	ci left: 8.238211e-04	ci right 9.944139e-04	k: 444	n:490000
SNAI1   490000 perm   185 sec   (2651 perm/sec)   p_kst 9.061224e-04   p_cons 7.645204e-01   p_joint 2.444898e-03

Joint ci ratio: 1.119543e-01	ci left: 2.309028e-03	ci right 2.584787e-03	k: 1222	n:500000
Cons ci ratio: 3.076467e-03	ci left: 7.633674e-01	ci right 7.657215e-01	k: 382273	n:500000
KS ci ratio: 1.838910e-01	ci left: 8.245120e-04	ci right 9.933574e-04	k: 453	n:500000
SNAI1   500000 perm   191 sec   (2625 perm/sec)   p_kst 9.060000e-04   p_cons 7.645460e-01   p_joint 2.444000e-03

Joint ci ratio: 1.107383e-01	ci left: 2.315221e-03	ci right 2.588520e-03	k: 1249	n:510000
Cons ci ratio: 3.044538e-03	ci left: 7.635707e-01	ci right 7.659008e-01	k: 390016	n:510000
KS ci ratio: 1.815073e-01	ci left: 8.307987e-04	ci right 9.984838e-04	k: 465	n:510000
SNAI1   510000 perm   196 sec   (2598 perm/sec)   p_kst 9.117647e-04   p_cons 7.647373e-01   p_joint 2.449020e-03

Joint ci ratio: 1.093040e-01	ci left: 2.332413e-03	ci right 2.603947e-03	k: 1282	n:520000
Cons ci ratio: 3.014596e-03	ci left: 7.636448e-01	ci right 7.659522e-01	k: 397696	n:520000
KS ci ratio: 1.792140e-01	ci left: 8.368571e-04	ci right 1.003400e-03	k: 477	n:520000
SNAI1   520000 perm   202 sec   (2572 perm/sec)   p_kst 9.173077e-04   p_cons 7.648000e-01   p_joint 2.465385e-03

Joint ci ratio: 1.080063e-01	ci left: 2.345307e-03	ci right 2.614894e-03	k: 1313	n:530000
Cons ci ratio: 2.986162e-03	ci left: 7.636388e-01	ci right 7.659244e-01	k: 405335	n:530000
KS ci ratio: 1.766450e-01	ci left: 8.463065e-04	ci right 1.012057e-03	k: 491	n:530000
SNAI1   530000 perm   208 sec   (2547 perm/sec)   p_kst 9.264151e-04   p_cons 7.647830e-01   p_joint 2.477358e-03

Joint ci ratio: 1.069532e-01	ci left: 2.348730e-03	ci right 2.615912e-03	k: 1339	n:540000
Cons ci ratio: 2.959340e-03	ci left: 7.635329e-01	ci right 7.657976e-01	k: 412920	n:540000
KS ci ratio: 1.745290e-01	ci left: 8.518799e-04	ci right 1.016513e-03	k: 503	n:540000
SNAI1   540000 perm   214 sec   (2522 perm/sec)   p_kst 9.314815e-04   p_cons 7.646667e-01   p_joint 2.479630e-03

Joint ci ratio: 1.059303e-01	ci left: 2.352040e-03	ci right 2.616880e-03	k: 1365	n:550000
Cons ci ratio: 2.931271e-03	ci left: 7.636714e-01	ci right 7.659149e-01	k: 420637	n:550000
KS ci ratio: 1.728228e-01	ci left: 8.537828e-04	ci right 1.017002e-03	k: 513	n:550000
SNAI1   550000 perm   220 sec   (2497 perm/sec)   p_kst 9.327273e-04   p_cons 7.647945e-01   p_joint 2.481818e-03

Joint ci ratio: 1.051257e-01	ci left: 2.346549e-03	ci right 2.608640e-03	k: 1386	n:560000
Cons ci ratio: 2.905110e-03	ci left: 7.636654e-01	ci right 7.658890e-01	k: 428276	n:560000
KS ci ratio: 1.714936e-01	ci left: 8.522067e-04	ci right 1.013742e-03	k: 521	n:560000
SNAI1   560000 perm   226 sec   (2473 perm/sec)   p_kst 9.303571e-04   p_cons 7.647786e-01   p_joint 2.475000e-03

Joint ci ratio: 1.043020e-01	ci left: 2.342967e-03	ci right 2.602482e-03	k: 1408	n:570000
Cons ci ratio: 2.879946e-03	ci left: 7.636212e-01	ci right 7.658253e-01	k: 435893	n:570000
KS ci ratio: 1.700341e-01	ci left: 8.523704e-04	ci right 1.012421e-03	k: 530	n:570000
SNAI1   570000 perm   233 sec   (2448 perm/sec)   p_kst 9.298246e-04   p_cons 7.647246e-01   p_joint 2.470175e-03

Joint ci ratio: 1.034250e-01	ci left: 2.342875e-03	ci right 2.600065e-03	k: 1432	n:580000
Cons ci ratio: 2.856246e-03	ci left: 7.634749e-01	ci right 7.656604e-01	k: 443450	n:580000
KS ci ratio: 1.689247e-01	ci left: 8.492313e-04	ci right 1.007546e-03	k: 537	n:580000
SNAI1   580000 perm   239 sec   (2426 perm/sec)   p_kst 9.258621e-04   p_cons 7.645690e-01   p_joint 2.468966e-03

Joint ci ratio: 1.024992e-01	ci left: 2.346099e-03	ci right 2.601198e-03	k: 1458	n:590000
Cons ci ratio: 2.831306e-03	ci left: 7.635645e-01	ci right 7.657312e-01	k: 451143	n:590000
KS ci ratio: 1.673762e-01	ci left: 8.510735e-04	ci right 1.008131e-03	k: 547	n:590000
SNAI1   590000 perm   245 sec   (2403 perm/sec)   p_kst 9.271186e-04   p_cons 7.646492e-01   p_joint 2.471186e-03

Joint ci ratio: 1.017353e-01	ci left: 2.342727e-03	ci right 2.595448e-03	k: 1480	n:600000
Cons ci ratio: 2.807255e-03	ci left: 7.636196e-01	ci right 7.657679e-01	k: 458817	n:600000
KS ci ratio: 1.666184e-01	ci left: 8.448738e-04	ci right 1.000010e-03	k: 552	n:600000
SNAI1   600000 perm   252 sec   (2381 perm/sec)   p_kst 9.200000e-04   p_cons 7.646950e-01   p_joint 2.466667e-03

Joint ci ratio: 8.856013e-02	ci left: 3.059814e-03	ci right 3.344936e-03	k: 1952	n:610000
Cons ci ratio: 2.784415e-03	ci left: 7.635940e-01	ci right 7.657248e-01	k: 466443	n:610000
KS ci ratio: 1.518138e-01	ci left: 1.008911e-03	ci right 1.176214e-03	k: 665	n:610000
SNAI1   610000 perm   259 sec   (2358 perm/sec)   p_kst 1.090164e-03   p_cons 7.646607e-01   p_joint 3.200000e-03

Joint ci ratio: 8.786560e-02	ci left: 3.059359e-03	ci right 3.342089e-03	k: 1983	n:620000
Cons ci ratio: 2.762372e-03	ci left: 7.635371e-01	ci right 7.656508e-01	k: 474049	n:620000
KS ci ratio: 1.505754e-01	ci left: 1.009709e-03	ci right 1.175655e-03	k: 676	n:620000
SNAI1   620000 perm   265 sec   (2337 perm/sec)   p_kst 1.090323e-03   p_cons 7.645952e-01   p_joint 3.198387e-03

Joint ci ratio: 8.718717e-02	ci left: 3.058927e-03	ci right 3.339323e-03	k: 2014	n:630000
Cons ci ratio: 2.739635e-03	ci left: 7.636410e-01	ci right 7.657375e-01	k: 481755	n:630000
KS ci ratio: 1.496939e-01	ci left: 1.005903e-03	ci right 1.170169e-03	k: 684	n:630000
SNAI1   630000 perm   272 sec   (2313 perm/sec)   p_kst 1.085714e-03   p_cons 7.646905e-01   p_joint 3.196825e-03

Joint ci ratio: 8.652420e-02	ci left: 3.058517e-03	ci right 3.336635e-03	k: 2045	n:640000
Cons ci ratio: 2.717426e-03	ci left: 7.637449e-01	ci right 7.658246e-01	k: 489463	n:640000
KS ci ratio: 1.482931e-01	ci left: 1.009741e-03	ci right 1.172954e-03	k: 697	n:640000
SNAI1   640000 perm   279 sec   (2292 perm/sec)   p_kst 1.089062e-03   p_cons 7.647859e-01   p_joint 3.195312e-03

Joint ci ratio: 8.566949e-02	ci left: 3.073182e-03	ci right 3.349736e-03	k: 2086	n:650000
Cons ci ratio: 2.697063e-03	ci left: 7.636699e-01	ci right 7.657339e-01	k: 497057	n:650000
KS ci ratio: 1.467245e-01	ci left: 1.016432e-03	ci right 1.178836e-03	k: 712	n:650000
SNAI1   650000 perm   286 sec   (2272 perm/sec)   p_kst 1.095385e-03   p_cons 7.647031e-01   p_joint 3.209231e-03

Joint ci ratio: 8.510079e-02	ci left: 3.068137e-03	ci right 3.342313e-03	k: 2114	n:660000
Cons ci ratio: 2.676564e-03	ci left: 7.636762e-01	ci right 7.657245e-01	k: 504703	n:660000
KS ci ratio: 1.459086e-01	ci left: 1.012709e-03	ci right 1.173540e-03	k: 720	n:660000
SNAI1   660000 perm   293 sec   (2252 perm/sec)   p_kst 1.090909e-03   p_cons 7.647015e-01   p_joint 3.203030e-03

Joint ci ratio: 8.474184e-02	ci left: 3.048638e-03	ci right 3.319865e-03	k: 2132	n:670000
Cons ci ratio: 2.655964e-03	ci left: 7.637586e-01	ci right 7.657913e-01	k: 512400	n:670000
KS ci ratio: 1.454059e-01	ci left: 1.004784e-03	ci right 1.163759e-03	k: 725	n:670000
SNAI1   670000 perm   300 sec   (2232 perm/sec)   p_kst 1.082090e-03   p_cons 7.647761e-01   p_joint 3.182090e-03

Joint ci ratio: 8.407429e-02	ci left: 3.052750e-03	ci right 3.322098e-03	k: 2166	n:680000
Cons ci ratio: 2.636769e-03	ci left: 7.637105e-01	ci right 7.657284e-01	k: 520010	n:680000
KS ci ratio: 1.442188e-01	ci left: 1.007016e-03	ci right 1.164931e-03	k: 737	n:680000
SNAI1   680000 perm   307 sec   (2212 perm/sec)   p_kst 1.083824e-03   p_cons 7.647206e-01   p_joint 3.185294e-03

Joint ci ratio: 8.878201e-02	ci left: 2.692276e-03	ci right 2.943811e-03	k: 1943	n:690000
Cons ci ratio: 2.617395e-03	ci left: 7.637452e-01	ci right 7.657482e-01	k: 527676	n:690000
KS ci ratio: 1.431558e-01	ci left: 1.007790e-03	ci right 1.164563e-03	k: 748	n:690000
SNAI1   690000 perm   315 sec   (2193 perm/sec)   p_kst 1.084058e-03   p_cons 7.647478e-01   p_joint 2.815942e-03

Joint ci ratio: 8.821679e-02	ci left: 2.688739e-03	ci right 2.938261e-03	k: 1968	n:700000
Cons ci ratio: 2.598699e-03	ci left: 7.637431e-01	ci right 7.657318e-01	k: 535317	n:700000
KS ci ratio: 1.419292e-01	ci left: 1.011302e-03	ci right 1.167159e-03	k: 761	n:700000
SNAI1   700000 perm   322 sec   (2174 perm/sec)   p_kst 1.087143e-03   p_cons 7.647386e-01   p_joint 2.811429e-03

Joint ci ratio: 8.755221e-02	ci left: 2.692194e-03	ci right 2.940059e-03	k: 1998	n:710000
Cons ci ratio: 2.580973e-03	ci left: 7.636608e-01	ci right 7.656357e-01	k: 542901	n:710000
KS ci ratio: 1.406428e-01	ci left: 1.016080e-03	ci right 1.171135e-03	k: 775	n:710000
SNAI1   710000 perm   330 sec   (2154 perm/sec)   p_kst 1.091549e-03   p_cons 7.646493e-01   p_joint 2.814085e-03

Joint ci ratio: 8.683808e-02	ci left: 2.699637e-03	ci right 2.946057e-03	k: 2031	n:720000
Cons ci ratio: 2.562913e-03	ci left: 7.636781e-01	ci right 7.656392e-01	k: 550555	n:720000
KS ci ratio: 1.391265e-01	ci left: 1.024753e-03	ci right 1.179306e-03	k: 792	n:720000
SNAI1   720000 perm   337 sec   (2136 perm/sec)   p_kst 1.100000e-03   p_cons 7.646597e-01   p_joint 2.820833e-03

Joint ci ratio: 8.897263e-02	ci left: 2.534030e-03	ci right 2.771314e-03	k: 1935	n:730000
Cons ci ratio: 2.545081e-03	ci left: 7.637156e-01	ci right 7.656631e-01	k: 558224	n:730000
KS ci ratio: 1.378287e-01	ci left: 1.030552e-03	ci right 1.184410e-03	k: 807	n:730000
SNAI1   730000 perm   345 sec   (2119 perm/sec)   p_kst 1.105479e-03   p_cons 7.646904e-01   p_joint 2.650685e-03

Joint ci ratio: 8.888222e-02	ci left: 2.505070e-03	ci right 2.739391e-03	k: 1939	n:740000
Cons ci ratio: 2.528072e-03	ci left: 7.636872e-01	ci right 7.656216e-01	k: 565845	n:740000
KS ci ratio: 1.370676e-01	ci left: 1.028369e-03	ci right 1.180985e-03	k: 816	n:740000
SNAI1   740000 perm   352 sec   (2101 perm/sec)   p_kst 1.102703e-03   p_cons 7.646554e-01   p_joint 2.620270e-03

Joint ci ratio: 8.902190e-02	ci left: 2.463844e-03	ci right 2.694691e-03	k: 1933	n:750000
Cons ci ratio: 2.511157e-03	ci left: 7.636942e-01	ci right 7.656157e-01	k: 573492	n:750000
KS ci ratio: 1.364017e-01	ci left: 1.024959e-03	ci right 1.176270e-03	k: 824	n:750000
SNAI1   750000 perm   360 sec   (2084 perm/sec)   p_kst 1.098667e-03   p_cons 7.646560e-01   p_joint 2.577333e-03

Joint ci ratio: 8.829408e-02	ci left: 2.472598e-03	ci right 2.702273e-03	k: 1965	n:760000
Cons ci ratio: 2.494569e-03	ci left: 7.637025e-01	ci right 7.656113e-01	k: 581140	n:760000
KS ci ratio: 1.354203e-01	ci left: 1.026725e-03	ci right 1.177119e-03	k: 836	n:760000
SNAI1   760000 perm   368 sec   (2068 perm/sec)   p_kst 1.100000e-03   p_cons 7.646579e-01   p_joint 2.585526e-03

Joint ci ratio: 8.874929e-02	ci left: 2.415084e-03	ci right 2.640633e-03	k: 1945	n:770000
Cons ci ratio: 2.478349e-03	ci left: 7.637041e-01	ci right 7.656004e-01	k: 588783	n:770000
KS ci ratio: 1.344598e-01	ci left: 1.028450e-03	ci right 1.177942e-03	k: 848	n:770000
SNAI1   770000 perm   376 sec   (2050 perm/sec)   p_kst 1.101299e-03   p_cons 7.646532e-01   p_joint 2.525974e-03

Joint ci ratio: 8.838720e-02	ci left: 2.404179e-03	ci right 2.627746e-03	k: 1961	n:780000
Cons ci ratio: 2.462284e-03	ci left: 7.637288e-01	ci right 7.656129e-01	k: 596444	n:780000
KS ci ratio: 1.340661e-01	ci left: 1.021459e-03	ci right 1.169466e-03	k: 853	n:780000
SNAI1   780000 perm   384 sec   (2034 perm/sec)   p_kst 1.093590e-03   p_cons 7.646718e-01   p_joint 2.514103e-03

Joint ci ratio: 8.215765e-02	ci left: 2.755336e-03	ci right 2.992636e-03	k: 2269	n:790000
Cons ci ratio: 2.446906e-03	ci left: 7.636971e-01	ci right 7.655693e-01	k: 604061	n:790000
KS ci ratio: 1.332109e-01	ci left: 1.021988e-03	ci right 1.169051e-03	k: 864	n:790000
SNAI1   790000 perm   392 sec   (2018 perm/sec)   p_kst 1.093671e-03   p_cons 7.646342e-01   p_joint 2.872152e-03

Joint ci ratio: 8.257974e-02	ci left: 2.692733e-03	ci right 2.925890e-03	k: 2246	n:800000
Cons ci ratio: 2.431137e-03	ci left: 7.637664e-01	ci right 7.656267e-01	k: 611758	n:800000
KS ci ratio: 1.325234e-01	ci left: 1.020089e-03	ci right 1.166062e-03	k: 873	n:800000
SNAI1   800000 perm   400 sec   (2002 perm/sec)   p_kst 1.091250e-03   p_cons 7.646975e-01   p_joint 2.807500e-03

Joint ci ratio: 8.442857e-02	ci left: 2.542229e-03	ci right 2.767524e-03	k: 2149	n:810000
Cons ci ratio: 2.416282e-03	ci left: 7.637425e-01	ci right 7.655914e-01	k: 619381	n:810000
KS ci ratio: 1.317718e-01	ci left: 1.019433e-03	ci right 1.164420e-03	k: 883	n:810000
SNAI1   810000 perm   408 sec   (1986 perm/sec)   p_kst 1.090123e-03   p_cons 7.646679e-01   p_joint 2.653086e-03

Joint ci ratio: 8.480648e-02	ci left: 2.488543e-03	ci right 2.710116e-03	k: 2130	n:820000
Cons ci ratio: 2.401241e-03	ci left: 7.637877e-01	ci right 7.656251e-01	k: 627060	n:820000
KS ci ratio: 1.307404e-01	ci left: 1.023513e-03	ci right 1.167853e-03	k: 897	n:820000
SNAI1   820000 perm   416 sec   (1971 perm/sec)   p_kst 1.093902e-03   p_cons 7.647073e-01   p_joint 2.597561e-03

Joint ci ratio: 8.445097e-02	ci left: 2.479787e-03	ci right 2.699611e-03	k: 2148	n:830000
Cons ci ratio: 2.386788e-03	ci left: 7.637847e-01	ci right 7.656110e-01	k: 634700	n:830000
KS ci ratio: 1.300902e-01	ci left: 1.021672e-03	ci right 1.164979e-03	k: 906	n:830000
SNAI1   830000 perm   424 sec   (1956 perm/sec)   p_kst 1.091566e-03   p_cons 7.646988e-01   p_joint 2.587952e-03

Joint ci ratio: 8.386740e-02	ci left: 2.485229e-03	ci right 2.703938e-03	k: 2178	n:840000
Cons ci ratio: 2.372695e-03	ci left: 7.637663e-01	ci right 7.655818e-01	k: 642327	n:840000
KS ci ratio: 1.290975e-01	ci left: 1.025635e-03	ci right 1.168317e-03	k: 920	n:840000
SNAI1   840000 perm   433 sec   (1941 perm/sec)   p_kst 1.095238e-03   p_cons 7.646750e-01   p_joint 2.592857e-03

Joint ci ratio: 8.584641e-02	ci left: 2.341984e-03	ci right 2.553194e-03	k: 2079	n:850000
Cons ci ratio: 2.359166e-03	ci left: 7.637001e-01	ci right 7.655051e-01	k: 649913	n:850000
KS ci ratio: 1.284714e-01	ci left: 1.023816e-03	ci right 1.165502e-03	k: 929	n:850000
SNAI1   850000 perm   441 sec   (1926 perm/sec)   p_kst 1.092941e-03   p_cons 7.646035e-01   p_joint 2.445882e-03

Joint ci ratio: 8.527419e-02	ci left: 2.346614e-03	ci right 2.556760e-03	k: 2107	n:860000
Cons ci ratio: 2.345000e-03	ci left: 7.637683e-01	ci right 7.655625e-01	k: 657613	n:860000
KS ci ratio: 1.277183e-01	ci left: 1.024292e-03	ci right 1.165150e-03	k: 940	n:860000
SNAI1   860000 perm   450 sec   (1912 perm/sec)   p_kst 1.093023e-03   p_cons 7.646663e-01   p_joint 2.450000e-03

Joint ci ratio: 8.481283e-02	ci left: 2.345516e-03	ci right 2.554371e-03	k: 2130	n:870000
Cons ci ratio: 2.331400e-03	ci left: 7.637865e-01	ci right 7.655704e-01	k: 665271	n:870000
KS ci ratio: 1.271791e-01	ci left: 1.021421e-03	ci right 1.161246e-03	k: 948	n:870000
SNAI1   870000 perm   458 sec   (1898 perm/sec)   p_kst 1.089655e-03   p_cons 7.646793e-01   p_joint 2.448276e-03

Joint ci ratio: 8.430005e-02	ci left: 2.347783e-03	ci right 2.555514e-03	k: 2156	n:880000
Cons ci ratio: 2.317997e-03	ci left: 7.638100e-01	ci right 7.655837e-01	k: 672934	n:880000
KS ci ratio: 1.267129e-01	ci left: 1.017515e-03	ci right 1.156257e-03	k: 955	n:880000
SNAI1   880000 perm   467 sec   (1885 perm/sec)   p_kst 1.085227e-03   p_cons 7.646977e-01   p_joint 2.450000e-03

Joint ci ratio: 8.387353e-02	ci left: 2.345602e-03	ci right 2.552039e-03	k: 2178	n:890000
Cons ci ratio: 2.304880e-03	ci left: 7.638241e-01	ci right 7.655877e-01	k: 680589	n:890000
KS ci ratio: 1.258599e-01	ci left: 1.020228e-03	ci right 1.158333e-03	k: 968	n:890000
SNAI1   890000 perm   476 sec   (1871 perm/sec)   p_kst 1.087640e-03   p_cons 7.647067e-01   p_joint 2.447191e-03

Joint ci ratio: 8.349145e-02	ci left: 2.341297e-03	ci right 2.546371e-03	k: 2198	n:900000
Cons ci ratio: 2.291997e-03	ci left: 7.638356e-01	ci right 7.655894e-01	k: 688242	n:900000
KS ci ratio: 1.253438e-01	ci left: 1.017502e-03	ci right 1.154631e-03	k: 976	n:900000
SNAI1   900000 perm   484 sec   (1858 perm/sec)   p_kst 1.084444e-03   p_cons 7.647133e-01   p_joint 2.442222e-03

Joint ci ratio: 8.300213e-02	ci left: 2.343545e-03	ci right 2.547554e-03	k: 2224	n:910000
Cons ci ratio: 2.279697e-03	ci left: 7.637886e-01	ci right 7.655328e-01	k: 695842	n:910000
KS ci ratio: 1.245179e-01	ci left: 1.020160e-03	ci right 1.156674e-03	k: 989	n:910000
SNAI1   910000 perm   493 sec   (1845 perm/sec)   p_kst 1.086813e-03   p_cons 7.646615e-01   p_joint 2.443956e-03

Joint ci ratio: 8.250294e-02	ci left: 2.346813e-03	ci right 2.549818e-03	k: 2251	n:920000
Cons ci ratio: 2.267456e-03	ci left: 7.637644e-01	ci right 7.654992e-01	k: 703462	n:920000
KS ci ratio: 1.236465e-01	ci left: 1.023816e-03	ci right 1.159791e-03	k: 1003	n:920000
SNAI1   920000 perm   502 sec   (1833 perm/sec)   p_kst 1.090217e-03   p_cons 7.646326e-01   p_joint 2.446739e-03

Joint ci ratio: 8.199463e-02	ci left: 2.351067e-03	ci right 2.553127e-03	k: 2279	n:930000
Cons ci ratio: 2.255073e-03	ci left: 7.637945e-01	ci right 7.655199e-01	k: 711132	n:930000
KS ci ratio: 1.229141e-01	ci left: 1.025313e-03	ci right 1.160621e-03	k: 1015	n:930000
SNAI1   930000 perm   511 sec   (1820 perm/sec)   p_kst 1.091398e-03   p_cons 7.646581e-01   p_joint 2.450538e-03

Joint ci ratio: 8.169097e-02	ci left: 2.343770e-03	ci right 2.544422e-03	k: 2296	n:940000
Cons ci ratio: 2.242612e-03	ci left: 7.638688e-01	ci right 7.655849e-01	k: 718844	n:940000
KS ci ratio: 1.224332e-01	ci left: 1.022655e-03	ci right 1.157046e-03	k: 1023	n:940000
SNAI1   940000 perm   520 sec   (1807 perm/sec)   p_kst 1.088298e-03   p_cons 7.647277e-01   p_joint 2.442553e-03

Joint ci ratio: 8.124999e-02	ci left: 2.344878e-03	ci right 2.544490e-03	k: 2321	n:950000
Cons ci ratio: 2.231014e-03	ci left: 7.638351e-01	ci right 7.655422e-01	k: 726455	n:950000
KS ci ratio: 1.217808e-01	ci left: 1.023115e-03	ci right 1.156799e-03	k: 1034	n:950000
SNAI1   950000 perm   529 sec   (1794 perm/sec)   p_kst 1.088421e-03   p_cons 7.646895e-01   p_joint 2.443158e-03

Joint ci ratio: 8.090251e-02	ci left: 2.340863e-03	ci right 2.539241e-03	k: 2341	n:960000
Cons ci ratio: 2.219402e-03	ci left: 7.638335e-01	ci right 7.655316e-01	k: 734096	n:960000
KS ci ratio: 1.212549e-01	ci left: 1.021548e-03	ci right 1.154409e-03	k: 1043	n:960000
SNAI1   960000 perm   539 sec   (1782 perm/sec)   p_kst 1.086458e-03   p_cons 7.646833e-01   p_joint 2.438542e-03

Joint ci ratio: 8.107723e-02	ci left: 2.306629e-03	ci right 2.502547e-03	k: 2331	n:970000
Cons ci ratio: 2.208064e-03	ci left: 7.638164e-01	ci right 7.655058e-01	k: 741722	n:970000
KS ci ratio: 1.205639e-01	ci left: 1.023013e-03	ci right 1.155253e-03	k: 1055	n:970000
SNAI1   970000 perm   548 sec   (1770 perm/sec)   p_kst 1.087629e-03   p_cons 7.646619e-01   p_joint 2.403093e-03

Joint ci ratio: 8.078360e-02	ci left: 2.300087e-03	ci right 2.494709e-03	k: 2348	n:980000
Cons ci ratio: 2.197178e-03	ci left: 7.637536e-01	ci right 7.654346e-01	k: 749303	n:980000
KS ci ratio: 1.200535e-01	ci left: 1.021482e-03	ci right 1.152924e-03	k: 1064	n:980000
SNAI1   980000 perm   557 sec   (1758 perm/sec)   p_kst 1.085714e-03   p_cons 7.645949e-01   p_joint 2.395918e-03

Joint ci ratio: 8.034012e-02	ci left: 2.302588e-03	ci right 2.496302e-03	k: 2374	n:990000
Cons ci ratio: 2.186182e-03	ci left: 7.637367e-01	ci right 7.654092e-01	k: 756928	n:990000
KS ci ratio: 1.196053e-01	ci left: 1.019002e-03	ci right 1.149602e-03	k: 1072	n:990000
SNAI1   990000 perm   567 sec   (1746 perm/sec)   p_kst 1.082828e-03   p_cons 7.645737e-01   p_joint 2.397980e-03

Joint ci ratio: 7.998739e-02	ci left: 2.300141e-03	ci right 2.492760e-03	k: 2395	n:1000000
Cons ci ratio: 2.175228e-03	ci left: 7.637402e-01	ci right 7.654043e-01	k: 764573	n:1000000
KS ci ratio: 1.190519e-01	ci left: 1.018514e-03	ci right 1.148404e-03	k: 1082	n:1000000
SNAI1   1000000 perm   577 sec   (1734 perm/sec)   p_kst 1.082000e-03   p_cons 7.645730e-01   p_joint 2.395000e-03

Joint ci ratio: 8.211097e-02	ci left: 2.159016e-03	ci right 2.344847e-03	k: 2273	n:1010000
Cons ci ratio: 2.164151e-03	ci left: 7.637912e-01	ci right 7.654469e-01	k: 772266	n:1010000
KS ci ratio: 1.185604e-01	ci left: 1.017075e-03	ci right 1.146209e-03	k: 1091	n:1010000
SNAI1   1010000 perm   586 sec   (1723 perm/sec)   p_kst 1.080198e-03   p_cons 7.646198e-01   p_joint 2.250495e-03

Joint ci ratio: 8.223883e-02	ci left: 2.131126e-03	ci right 2.314856e-03	k: 2266	n:1020000
Cons ci ratio: 2.153424e-03	ci left: 7.638108e-01	ci right 7.654583e-01	k: 779928	n:1020000
KS ci ratio: 1.182363e-01	ci left: 1.012812e-03	ci right 1.141029e-03	k: 1097	n:1020000
SNAI1   1020000 perm   596 sec   (1712 perm/sec)   p_kst 1.075490e-03   p_cons 7.646353e-01   p_joint 2.221569e-03

Joint ci ratio: 8.198640e-02	ci left: 2.123749e-03	ci right 2.306253e-03	k: 2280	n:1030000
Cons ci ratio: 2.143351e-03	ci left: 7.637464e-01	ci right 7.653861e-01	k: 787504	n:1030000
KS ci ratio: 1.178614e-01	ci left: 1.009574e-03	ci right 1.136948e-03	k: 1104	n:1030000
SNAI1   1030000 perm   606 sec   (1700 perm/sec)   p_kst 1.071845e-03   p_cons 7.645670e-01   p_joint 2.213592e-03

Joint ci ratio: 8.233164e-02	ci left: 2.085432e-03	ci right 2.265435e-03	k: 2261	n:1040000
Cons ci ratio: 2.132963e-03	ci left: 7.637603e-01	ci right 7.653921e-01	k: 795160	n:1040000
KS ci ratio: 1.168605e-01	ci left: 1.017600e-03	ci right 1.144820e-03	k: 1123	n:1040000
SNAI1   1040000 perm   616 sec   (1688 perm/sec)   p_kst 1.079808e-03   p_cons 7.645769e-01   p_joint 2.174038e-03

Joint ci ratio: 8.179072e-02	ci left: 2.093557e-03	ci right 2.273017e-03	k: 2291	n:1050000
Cons ci ratio: 2.122999e-03	ci left: 7.637273e-01	ci right 7.653513e-01	k: 802767	n:1050000
KS ci ratio: 1.162929e-01	ci left: 1.018079e-03	ci right 1.144699e-03	k: 1134	n:1050000
SNAI1   1050000 perm   626 sec   (1677 perm/sec)   p_kst 1.080000e-03   p_cons 7.645400e-01   p_joint 2.181905e-03

Joint ci ratio: 8.286737e-02	ci left: 2.019288e-03	ci right 2.194771e-03	k: 2232	n:1060000
Cons ci ratio: 2.112775e-03	ci left: 7.637628e-01	ci right 7.653791e-01	k: 810446	n:1060000
KS ci ratio: 1.158853e-01	ci left: 1.015803e-03	ci right 1.141666e-03	k: 1142	n:1060000
SNAI1   1060000 perm   636 sec   (1666 perm/sec)   p_kst 1.077358e-03   p_cons 7.645717e-01   p_joint 2.105660e-03

Joint ci ratio: 8.537596e-02	ci left: 1.882386e-03	ci right 2.051170e-03	k: 2103	n:1070000
Cons ci ratio: 2.102709e-03	ci left: 7.637959e-01	ci right 7.654045e-01	k: 818123	n:1070000
KS ci ratio: 1.150824e-01	ci left: 1.020831e-03	ci right 1.146381e-03	k: 1158	n:1070000
SNAI1   1070000 perm   646 sec   (1656 perm/sec)   p_kst 1.082243e-03   p_cons 7.646009e-01   p_joint 1.965421e-03

Joint ci ratio: 8.019603e-02	ci left: 2.118863e-03	ci right 2.296786e-03	k: 2383	n:1080000
Cons ci ratio: 2.093237e-03	ci left: 7.637505e-01	ci right 7.653518e-01	k: 825716	n:1080000
KS ci ratio: 1.144422e-01	ci left: 1.023070e-03	ci right 1.148149e-03	k: 1171	n:1080000
SNAI1   1080000 perm   657 sec   (1645 perm/sec)   p_kst 1.084259e-03   p_cons 7.645519e-01   p_joint 2.206481e-03

Joint ci ratio: 7.994518e-02	ci left: 2.112910e-03	ci right 2.289752e-03	k: 2398	n:1090000
Cons ci ratio: 2.083907e-03	ci left: 7.637032e-01	ci right 7.652972e-01	k: 833306	n:1090000
KS ci ratio: 1.140538e-01	ci left: 1.020814e-03	ci right 1.145165e-03	k: 1179	n:1090000
SNAI1   1090000 perm   667 sec   (1635 perm/sec)   p_kst 1.081651e-03   p_cons 7.645009e-01   p_joint 2.200000e-03

Joint ci ratio: 7.966360e-02	ci left: 2.108848e-03	ci right 2.284699e-03	k: 2415	n:1100000
Cons ci ratio: 2.074764e-03	ci left: 7.636458e-01	ci right 7.652328e-01	k: 840884	n:1100000
KS ci ratio: 1.137172e-01	ci left: 1.017716e-03	ci right 1.141299e-03	k: 1186	n:1100000
SNAI1   1100000 perm   677 sec   (1625 perm/sec)   p_kst 1.078182e-03   p_cons 7.644400e-01   p_joint 2.195455e-03

Joint ci ratio: 7.930335e-02	ci left: 2.109275e-03	ci right 2.284330e-03	k: 2437	n:1110000
Cons ci ratio: 2.065441e-03	ci left: 7.636419e-01	ci right 7.652216e-01	k: 848520	n:1110000
KS ci ratio: 1.133360e-01	ci left: 1.015550e-03	ci right 1.138429e-03	k: 1194	n:1110000
SNAI1   1110000 perm   687 sec   (1615 perm/sec)   p_kst 1.075676e-03   p_cons 7.644324e-01   p_joint 2.195495e-03

Joint ci ratio: 7.883562e-02	ci left: 2.115823e-03	ci right 2.290339e-03	k: 2466	n:1120000
Cons ci ratio: 2.056380e-03	ci left: 7.636138e-01	ci right 7.651866e-01	k: 856129	n:1120000
KS ci ratio: 1.126311e-01	ci left: 1.019497e-03	ci right 1.142035e-03	k: 1209	n:1120000
SNAI1   1120000 perm   698 sec   (1605 perm/sec)   p_kst 1.079464e-03   p_cons 7.644009e-01   p_joint 2.201786e-03

Joint ci ratio: 7.853388e-02	ci left: 2.113582e-03	ci right 2.287215e-03	k: 2485	n:1130000
Cons ci ratio: 2.047200e-03	ci left: 7.636279e-01	ci right 7.651937e-01	k: 863785	n:1130000
KS ci ratio: 1.123069e-01	ci left: 1.016495e-03	ci right 1.138298e-03	k: 1216	n:1130000
SNAI1   1130000 perm   709 sec   (1595 perm/sec)   p_kst 1.076106e-03   p_cons 7.644115e-01   p_joint 2.199115e-03

Joint ci ratio: 8.241255e-02	ci left: 1.899056e-03	ci right 2.063140e-03	k: 2257	n:1140000
Cons ci ratio: 2.038371e-03	ci left: 7.636014e-01	ci right 7.651604e-01	k: 871395	n:1140000
KS ci ratio: 1.117573e-01	ci left: 1.017810e-03	ci right 1.139134e-03	k: 1228	n:1140000
SNAI1   1140000 perm   719 sec   (1585 perm/sec)   p_kst 1.077193e-03   p_cons 7.643816e-01   p_joint 1.979825e-03

Joint ci ratio: 8.221286e-02	ci left: 1.891910e-03	ci right 2.054962e-03	k: 2268	n:1150000
Cons ci ratio: 2.029723e-03	ci left: 7.635632e-01	ci right 7.651155e-01	k: 878991	n:1150000
KS ci ratio: 1.116669e-01	ci left: 1.010650e-03	ci right 1.131016e-03	k: 1230	n:1150000
SNAI1   1150000 perm   730 sec   (1575 perm/sec)   p_kst 1.069565e-03   p_cons 7.643400e-01   p_joint 1.972174e-03

Joint ci ratio: 8.185290e-02	ci left: 1.892488e-03	ci right 2.054842e-03	k: 2288	n:1160000
Cons ci ratio: 2.020817e-03	ci left: 7.635913e-01	ci right 7.651367e-01	k: 886663	n:1160000
KS ci ratio: 1.113509e-01	ci left: 1.007803e-03	ci right 1.127469e-03	k: 1237	n:1160000
SNAI1   1160000 perm   741 sec   (1565 perm/sec)   p_kst 1.066379e-03   p_cons 7.643647e-01   p_joint 1.972414e-03

Joint ci ratio: 8.142699e-02	ci left: 1.896408e-03	ci right 2.058211e-03	k: 2312	n:1170000
Cons ci ratio: 2.012404e-03	ci left: 7.635512e-01	ci right 7.650902e-01	k: 894256	n:1170000
KS ci ratio: 1.109484e-01	ci left: 1.006668e-03	ci right 1.125739e-03	k: 1246	n:1170000
SNAI1   1170000 perm   752 sec   (1556 perm/sec)   p_kst 1.064957e-03   p_cons 7.643214e-01   p_joint 1.976068e-03

Joint ci ratio: 8.109462e-02	ci left: 1.896111e-03	ci right 2.057197e-03	k: 2331	n:1180000
Cons ci ratio: 2.003775e-03	ci left: 7.635696e-01	ci right 7.651020e-01	k: 901917	n:1180000
KS ci ratio: 1.105944e-01	ci left: 1.004729e-03	ci right 1.123166e-03	k: 1254	n:1180000
SNAI1   1180000 perm   763 sec   (1546 perm/sec)   p_kst 1.062712e-03   p_cons 7.643364e-01   p_joint 1.975424e-03

Joint ci ratio: 8.080074e-02	ci left: 1.894174e-03	ci right 2.054484e-03	k: 2348	n:1190000
Cons ci ratio: 1.995233e-03	ci left: 7.635919e-01	ci right 7.651178e-01	k: 909583	n:1190000
KS ci ratio: 1.102874e-01	ci left: 1.002005e-03	ci right 1.119772e-03	k: 1261	n:1190000
SNAI1   1190000 perm   774 sec   (1537 perm/sec)   p_kst 1.059664e-03   p_cons 7.643555e-01   p_joint 1.973109e-03

Joint ci ratio: 8.044192e-02	ci left: 1.895536e-03	ci right 2.055216e-03	k: 2369	n:1200000
Cons ci ratio: 1.986730e-03	ci left: 7.636263e-01	ci right 7.651457e-01	k: 917264	n:1200000
KS ci ratio: 1.098098e-01	ci left: 1.002570e-03	ci right 1.119860e-03	k: 1272	n:1200000
SNAI1   1200000 perm   785 sec   (1528 perm/sec)   p_kst 1.060000e-03   p_cons 7.643867e-01   p_joint 1.974167e-03

Joint ci ratio: 8.015505e-02	ci left: 1.893638e-03	ci right 2.052563e-03	k: 2386	n:1210000
Cons ci ratio: 1.978416e-03	ci left: 7.636453e-01	ci right 7.651584e-01	k: 924927	n:1210000
KS ci ratio: 1.094238e-01	ci left: 1.001518e-03	ci right 1.118247e-03	k: 1281	n:1210000
SNAI1   1210000 perm   797 sec   (1519 perm/sec)   p_kst 1.058678e-03   p_cons 7.644025e-01   p_joint 1.971901e-03

Joint ci ratio: 7.566646e-02	ci left: 2.112006e-03	ci right 2.278896e-03	k: 2677	n:1220000
Cons ci ratio: 1.970202e-03	ci left: 7.636648e-01	ci right 7.651716e-01	k: 932591	n:1220000
KS ci ratio: 1.089573e-01	ci left: 1.002079e-03	ci right 1.118343e-03	k: 1292	n:1220000
SNAI1   1220000 perm   808 sec   (1510 perm/sec)   p_kst 1.059016e-03   p_cons 7.644189e-01   p_joint 2.194262e-03

Joint ci ratio: 7.534358e-02	ci left: 2.113182e-03	ci right 2.279420e-03	k: 2700	n:1230000
Cons ci ratio: 1.962022e-03	ci left: 7.636962e-01	ci right 7.651969e-01	k: 940270	n:1230000
KS ci ratio: 1.085384e-01	ci left: 1.001841e-03	ci right 1.117602e-03	k: 1302	n:1230000
SNAI1   1230000 perm   819 sec   (1501 perm/sec)   p_kst 1.058537e-03   p_cons 7.644472e-01   p_joint 2.195122e-03

Joint ci ratio: 7.498342e-02	ci left: 2.116714e-03	ci right 2.282400e-03	k: 2726	n:1240000
Cons ci ratio: 1.954185e-03	ci left: 7.636827e-01	ci right 7.651773e-01	k: 947894	n:1240000
KS ci ratio: 1.080831e-01	ci left: 1.002392e-03	ci right 1.117700e-03	k: 1313	n:1240000
SNAI1   1240000 perm   831 sec   (1492 perm/sec)   p_kst 1.058871e-03   p_cons 7.644306e-01   p_joint 2.198387e-03

Joint ci ratio: 7.882866e-02	ci left: 1.896553e-03	ci right 2.052969e-03	k: 2467	n:1250000
Cons ci ratio: 1.946120e-03	ci left: 7.637287e-01	ci right 7.652173e-01	k: 955592	n:1250000
KS ci ratio: 1.077150e-01	ci left: 1.001379e-03	ci right 1.116153e-03	k: 1322	n:1250000
SNAI1   1250000 perm   843 sec   (1483 perm/sec)   p_kst 1.057600e-03   p_cons 7.644736e-01   p_joint 1.973600e-03

Joint ci ratio: 7.840075e-02	ci left: 1.902509e-03	ci right 2.058525e-03	k: 2494	n:1260000
Cons ci ratio: 1.938359e-03	ci left: 7.637359e-01	ci right 7.652185e-01	k: 963242	n:1260000
KS ci ratio: 1.071494e-01	ci left: 1.004244e-03	ci right 1.118704e-03	k: 1336	n:1260000
SNAI1   1260000 perm   854 sec   (1475 perm/sec)   p_kst 1.060317e-03   p_cons 7.644778e-01   p_joint 1.979365e-03

Joint ci ratio: 7.807284e-02	ci left: 1.903741e-03	ci right 2.059175e-03	k: 2515	n:1270000
Cons ci ratio: 1.930552e-03	ci left: 7.637689e-01	ci right 7.652456e-01	k: 970925	n:1270000
KS ci ratio: 1.066321e-01	ci left: 1.006299e-03	ci right 1.120405e-03	k: 1349	n:1270000
SNAI1   1270000 perm   866 sec   (1466 perm/sec)   p_kst 1.062205e-03   p_cons 7.645079e-01   p_joint 1.980315e-03

Joint ci ratio: 7.787212e-02	ci left: 1.898826e-03	ci right 2.053442e-03	k: 2528	n:1280000
Cons ci ratio: 1.923171e-03	ci left: 7.637389e-01	ci right 7.652099e-01	k: 978528	n:1280000
KS ci ratio: 1.058892e-01	ci left: 1.012887e-03	ci right 1.126890e-03	k: 1368	n:1280000
SNAI1   1280000 perm   878 sec   (1458 perm/sec)   p_kst 1.068750e-03   p_cons 7.644750e-01   p_joint 1.975000e-03

Joint ci ratio: 7.755077e-02	ci left: 1.900069e-03	ci right 2.054119e-03	k: 2549	n:1290000
Cons ci ratio: 1.915623e-03	ci left: 7.637567e-01	ci right 7.652219e-01	k: 986192	n:1290000
KS ci ratio: 1.053137e-01	ci left: 1.016356e-03	ci right 1.130089e-03	k: 1383	n:1290000
SNAI1   1290000 perm   890 sec   (1449 perm/sec)   p_kst 1.072093e-03   p_cons 7.644899e-01   p_joint 1.975969e-03

Joint ci ratio: 7.723337e-02	ci left: 1.901294e-03	ci right 2.054784e-03	k: 2570	n:1300000
Cons ci ratio: 1.908355e-03	ci left: 7.637381e-01	ci right 7.651977e-01	k: 993809	n:1300000
KS ci ratio: 1.049730e-01	ci left: 1.015279e-03	ci right 1.128501e-03	k: 1392	n:1300000
SNAI1   1300000 perm   902 sec   (1441 perm/sec)   p_kst 1.070769e-03   p_cons 7.644685e-01   p_joint 1.976923e-03

Joint ci ratio: 7.683078e-02	ci left: 1.906994e-03	ci right 2.060106e-03	k: 2597	n:1310000
Cons ci ratio: 1.900931e-03	ci left: 7.637648e-01	ci right 7.652188e-01	k: 1001485	n:1310000
KS ci ratio: 1.044122e-01	ci left: 1.018679e-03	ci right 1.131637e-03	k: 1407	n:1310000
SNAI1   1310000 perm   914 sec   (1433 perm/sec)   p_kst 1.074046e-03   p_cons 7.644924e-01   p_joint 1.982443e-03

Joint ci ratio: 7.653674e-02	ci left: 1.907408e-03	ci right 2.059941e-03	k: 2617	n:1320000
Cons ci ratio: 1.893469e-03	ci left: 7.638146e-01	ci right 7.652630e-01	k: 1009192	n:1320000
KS ci ratio: 1.039700e-01	ci left: 1.019816e-03	ci right 1.132391e-03	k: 1419	n:1320000
SNAI1   1320000 perm   926 sec   (1425 perm/sec)   p_kst 1.075000e-03   p_cons 7.645394e-01   p_joint 1.982576e-03

Joint ci ratio: 7.618820e-02	ci left: 1.910768e-03	ci right 2.062843e-03	k: 2641	n:1330000
Cons ci ratio: 1.886312e-03	ci left: 7.638223e-01	ci right 7.652652e-01	k: 1016844	n:1330000
KS ci ratio: 1.036059e-01	ci left: 1.019472e-03	ci right 1.131591e-03	k: 1429	n:1330000
SNAI1   1330000 perm   939 sec   (1417 perm/sec)   p_kst 1.074436e-03   p_cons 7.645444e-01   p_joint 1.985714e-03

Joint ci ratio: 7.587290e-02	ci left: 1.912614e-03	ci right 2.064178e-03	k: 2663	n:1340000
Cons ci ratio: 1.879394e-03	ci left: 7.637993e-01	ci right 7.652369e-01	k: 1024455	n:1340000
KS ci ratio: 1.031380e-01	ci left: 1.021315e-03	ci right 1.133099e-03	k: 1442	n:1340000
SNAI1   1340000 perm   951 sec   (1409 perm/sec)   p_kst 1.076119e-03   p_cons 7.645187e-01   p_joint 1.987313e-03

Joint ci ratio: 7.557557e-02	ci left: 1.913708e-03	ci right 2.064738e-03	k: 2684	n:1350000
Cons ci ratio: 1.872383e-03	ci left: 7.638093e-01	ci right 7.652415e-01	k: 1032110	n:1350000
KS ci ratio: 1.026412e-01	ci left: 1.023853e-03	ci right 1.135342e-03	k: 1456	n:1350000
SNAI1   1350000 perm   964 sec   (1401 perm/sec)   p_kst 1.078519e-03   p_cons 7.645259e-01   p_joint 1.988148e-03

Joint ci ratio: 7.624773e-02	ci left: 1.865732e-03	ci right 2.014343e-03	k: 2637	n:1360000
Cons ci ratio: 1.865396e-03	ci left: 7.638294e-01	ci right 7.652563e-01	k: 1039779	n:1360000
KS ci ratio: 1.021862e-01	ci left: 1.025639e-03	ci right 1.136798e-03	k: 1469	n:1360000
SNAI1   1360000 perm   976 sec   (1393 perm/sec)   p_kst 1.080147e-03   p_cons 7.645434e-01   p_joint 1.938971e-03

Joint ci ratio: 7.598896e-02	ci left: 1.865002e-03	ci right 2.013029e-03	k: 2655	n:1370000
Cons ci ratio: 1.858483e-03	ci left: 7.638499e-01	ci right 7.652716e-01	k: 1047449	n:1370000
KS ci ratio: 1.017716e-01	ci left: 1.026688e-03	ci right 1.137482e-03	k: 1481	n:1370000
SNAI1   1370000 perm   989 sec   (1385 perm/sec)   p_kst 1.081022e-03   p_cons 7.645613e-01   p_joint 1.937956e-03

Joint ci ratio: 7.574700e-02	ci left: 1.863572e-03	ci right 2.010994e-03	k: 2672	n:1380000
Cons ci ratio: 1.852026e-03	ci left: 7.637962e-01	ci right 7.652128e-01	k: 1055017	n:1380000
KS ci ratio: 1.014300e-01	ci left: 1.026310e-03	ci right 1.136670e-03	k: 1491	n:1380000
SNAI1   1380000 perm   1002 sec   (1378 perm/sec)   p_kst 1.080435e-03   p_cons 7.645051e-01   p_joint 1.936232e-03

Joint ci ratio: 7.547922e-02	ci left: 1.863576e-03	ci right 2.010454e-03	k: 2691	n:1390000
Cons ci ratio: 1.845164e-03	ci left: 7.638355e-01	ci right 7.652469e-01	k: 1062713	n:1390000
KS ci ratio: 1.011931e-01	ci left: 1.023835e-03	ci right 1.133656e-03	k: 1498	n:1390000
SNAI1   1390000 perm   1014 sec   (1371 perm/sec)   p_kst 1.077698e-03   p_cons 7.645417e-01   p_joint 1.935971e-03

Joint ci ratio: 7.350876e-02	ci left: 1.952611e-03	ci right 2.102318e-03	k: 2837	n:1400000
Cons ci ratio: 1.838746e-03	ci left: 7.638020e-01	ci right 7.652084e-01	k: 1070308	n:1400000
KS ci ratio: 1.007237e-01	ci left: 1.026270e-03	ci right 1.135811e-03	k: 1512	n:1400000
SNAI1   1400000 perm   1027 sec   (1363 perm/sec)   p_kst 1.080000e-03   p_cons 7.645057e-01   p_joint 2.026429e-03

Joint ci ratio: 7.317418e-02	ci left: 1.956865e-03	ci right 2.106185e-03	k: 2863	n:1410000
Cons ci ratio: 1.832103e-03	ci left: 7.638264e-01	ci right 7.652278e-01	k: 1077984	n:1410000
KS ci ratio: 1.003266e-01	ci left: 1.027288e-03	ci right 1.136480e-03	k: 1524	n:1410000
SNAI1   1410000 perm   1040 sec   (1356 perm/sec)   p_kst 1.080851e-03   p_cons 7.645277e-01   p_joint 2.030496e-03

Joint ci ratio: 7.295806e-02	ci left: 1.954837e-03	ci right 2.103544e-03	k: 2880	n:1420000
Cons ci ratio: 1.825602e-03	ci left: 7.638365e-01	ci right 7.652329e-01	k: 1085640	n:1420000
KS ci ratio: 9.993413e-02	ci left: 1.028293e-03	ci right 1.137139e-03	k: 1536	n:1420000
SNAI1   1420000 perm   1053 sec   (1349 perm/sec)   p_kst 1.081690e-03   p_cons 7.645352e-01   p_joint 2.028169e-03

Outputting figure to mutsig2_images.part000000000163/SNAI1.4_807_1420000_0.0010817_0.76454_0.0020282.png
                gene_name: SNAI1
               theta_stop: 0.100 
                    nperm: 1420000 
                     p_ks: 0.0011 
        ci_ks_bounds_left: 0.0010 
       ci_ks_bounds_right: 0.0011 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.0020 
     ci_joint_bounds_left: 0.0020 
    ci_joint_bounds_right: 0.0021 

Current progress: 37 percent done.
SMPD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.355812e-02	ci left: 4.376211e-01	ci right 4.572096e-01	k: 4474	n:10000
Cons ci ratio: 4.907736e-02	ci left: 3.798263e-01	ci right 3.990382e-01	k: 3894	n:10000
KS ci ratio: 6.628658e-02	ci left: 2.504348e-01	ci right 2.677057e-01	k: 2590	n:10000
SMPD3   10000 perm   2 sec   (6036 perm/sec)   p_kst 2.590000e-01   p_cons 3.894000e-01   p_joint 4.474000e-01

Outputting figure to mutsig2_images.part000000000163/SMPD3.3_1996_10000_0.259_0.3894_0.4474.png
                gene_name: SMPD3
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 39 percent done.
SNAI2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.699204e-02	ci left: 1.335486e-01	ci right 1.472617e-01	k: 1403	n:10000
Cons ci ratio: 2.348632e-01	ci left: 2.391158e-02	ci right 3.036784e-02	k: 270	n:10000
KS ci ratio: 2.371833e-02	ci left: 7.232022e-01	ci right 7.406625e-01	k: 7320	n:10000
SNAI2   10000 perm   2 sec   (6647 perm/sec)   p_kst 7.320000e-01   p_cons 2.700000e-02   p_joint 1.403000e-01

Joint ci ratio: 6.902878e-02	ci left: 1.340362e-01	ci right 1.436691e-01	k: 2776	n:20000
Cons ci ratio: 1.616844e-01	ci left: 2.623765e-02	ci right 3.090076e-02	k: 570	n:20000
KS ci ratio: 1.684433e-02	ci left: 7.240911e-01	ci right 7.364419e-01	k: 14606	n:20000
SNAI2   20000 perm   3 sec   (5781 perm/sec)   p_kst 7.303000e-01   p_cons 2.850000e-02   p_joint 1.388000e-01

Joint ci ratio: 5.531400e-02	ci left: 1.394191e-01	ci right 1.473835e-01	k: 4301	n:30000
Cons ci ratio: 1.322943e-01	ci left: 2.654940e-02	ci right 3.034265e-02	k: 852	n:30000
KS ci ratio: 1.376505e-02	ci left: 7.249039e-01	ci right 7.349849e-01	k: 21899	n:30000
SNAI2   30000 perm   5 sec   (5486 perm/sec)   p_kst 7.299667e-01   p_cons 2.840000e-02   p_joint 1.433667e-01

Joint ci ratio: 4.794250e-02	ci left: 1.397561e-01	ci right 1.466458e-01	k: 5727	n:40000
Cons ci ratio: 1.130120e-01	ci left: 2.754747e-02	ci right 3.087134e-02	k: 1167	n:40000
KS ci ratio: 1.196905e-02	ci left: 7.239871e-01	ci right 7.327297e-01	k: 29135	n:40000
SNAI2   40000 perm   8 sec   (5300 perm/sec)   p_kst 7.283750e-01   p_cons 2.917500e-02   p_joint 1.431750e-01

Joint ci ratio: 4.323057e-02	ci left: 1.381586e-01	ci right 1.442831e-01	k: 7060	n:50000
Cons ci ratio: 1.018017e-01	ci left: 2.733197e-02	ci right 3.028307e-02	k: 1439	n:50000
KS ci ratio: 1.074158e-02	ci left: 7.231122e-01	ci right 7.309415e-01	k: 36352	n:50000
SNAI2   50000 perm   10 sec   (5156 perm/sec)   p_kst 7.270400e-01   p_cons 2.878000e-02   p_joint 1.412000e-01

Joint ci ratio: 3.944555e-02	ci left: 1.385384e-01	ci right 1.441297e-01	k: 8479	n:60000
Cons ci ratio: 9.271123e-02	ci left: 2.759032e-02	ci right 3.028883e-02	k: 1735	n:60000
KS ci ratio: 9.772922e-03	ci left: 7.247883e-01	ci right 7.319230e-01	k: 43702	n:60000
SNAI2   60000 perm   12 sec   (5033 perm/sec)   p_kst 7.283667e-01   p_cons 2.891667e-02   p_joint 1.413167e-01

Outputting figure to mutsig2_images.part000000000163/SNAI2.3_819_60000_0.72837_0.028917_0.14132.png
                gene_name: SNAI2
               theta_stop: 0.093 
                    nperm: 60000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.029 
      ci_cons_bounds_left: 0.028 
     ci_cons_bounds_right: 0.030 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.14 

Current progress: 42 percent done.
SNAP47
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.758897e-02	ci left: 5.110539e-01	ci right 5.307340e-01	k: 5209	n:10000
KS ci ratio: 2.078242e-02	ci left: 7.723578e-01	ci right 7.886785e-01	k: 7806	n:10000
SNAP47   10000 perm   2 sec   (6067 perm/sec)   p_kst 7.806000e-01   p_cons 5.209000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000163/SNAP47.3_1415_10000_0.7806_0.5209_1.png
                gene_name: SNAP47
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 45 percent done.
SNCAIP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.269431e-02	ci left: 5.799842e-01	ci right 5.993635e-01	k: 5897	n:10000
Cons ci ratio: 2.753382e-02	ci left: 6.602828e-01	ci right 6.788183e-01	k: 6696	n:10000
KS ci ratio: 5.874346e-02	ci left: 2.989585e-01	ci right 3.171535e-01	k: 3080	n:10000
SNCAIP   10000 perm   2 sec   (5452 perm/sec)   p_kst 3.080000e-01   p_cons 6.696000e-01   p_joint 5.897000e-01

Outputting figure to mutsig2_images.part000000000163/SNCAIP.3_2800_10000_0.308_0.6696_0.5897.png
                gene_name: SNCAIP
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 47 percent done.
SNRPB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.857548e-02	ci left: 3.847036e-01	ci right 4.039580e-01	k: 3943	n:10000
Cons ci ratio: 9.724413e-03	ci left: 9.373421e-01	ci right 9.465983e-01	k: 9421	n:10000
KS ci ratio: 6.038129e-02	ci left: 2.874598e-01	ci right 3.054589e-01	k: 2964	n:10000
SNRPB   10000 perm   2 sec   (6461 perm/sec)   p_kst 2.964000e-01   p_cons 9.421000e-01   p_joint 3.943000e-01

Outputting figure to mutsig2_images.part000000000163/SNRPB.3_766_10000_0.2964_0.9421_0.3943.png
                gene_name: SNRPB
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 50 percent done.
SNX18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.614875e-02	ci left: 2.512260e-01	ci right 2.685141e-01	k: 2598	n:10000
Cons ci ratio: 1.881975e-02	ci left: 8.049125e-01	ci right 8.203049e-01	k: 8127	n:10000
KS ci ratio: 7.283413e-02	ci left: 2.163531e-01	ci right 2.328076e-01	k: 2245	n:10000
SNX18   10000 perm   2 sec   (5969 perm/sec)   p_kst 2.245000e-01   p_cons 8.127000e-01   p_joint 2.598000e-01

Outputting figure to mutsig2_images.part000000000163/SNX18.3_2149_10000_0.2245_0.8127_0.2598.png
                gene_name: SNX18
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 53 percent done.
SMOC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.628821e-02	ci left: 8.457031e-01	ci right 8.596908e-01	k: 8528	n:10000
Cons ci ratio: 7.125468e-03	ci left: 9.644665e-01	ci right 9.714574e-01	k: 9681	n:10000
KS ci ratio: 1.206345e-01	ci left: 8.971071e-02	ci right 1.013261e-01	k: 954	n:10000
SMOC2   10000 perm   2 sec   (6485 perm/sec)   p_kst 9.540000e-02   p_cons 9.681000e-01   p_joint 8.528000e-01

Joint ci ratio: 1.198984e-02	ci left: 8.372755e-01	ci right 8.474247e-01	k: 16848	n:20000
Cons ci ratio: 5.006477e-03	ci left: 9.659333e-01	ci right 9.708292e-01	k: 19369	n:20000
KS ci ratio: 8.595144e-02	ci left: 9.013685e-02	ci right 9.828157e-02	k: 1883	n:20000
SMOC2   20000 perm   3 sec   (5729 perm/sec)   p_kst 9.415000e-02   p_cons 9.684500e-01   p_joint 8.424000e-01

Outputting figure to mutsig2_images.part000000000163/SMOC2.2_1426_20000_0.09415_0.96845_0.8424.png
                gene_name: SMOC2
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.094 
        ci_ks_bounds_left: 0.090 
       ci_ks_bounds_right: 0.098 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 55 percent done.
SMR3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.960880e-02	ci left: 2.928118e-01	ci right 3.109038e-01	k: 3018	n:10000
Cons ci ratio: 4.543874e-02	ci left: 4.168789e-01	ci right 4.363639e-01	k: 4266	n:10000
KS ci ratio: 7.045098e-02	ci left: 2.280016e-01	ci right 2.447522e-01	k: 2363	n:10000
SMR3A   10000 perm   1 sec   (7078 perm/sec)   p_kst 2.363000e-01   p_cons 4.266000e-01   p_joint 3.018000e-01

Outputting figure to mutsig2_images.part000000000163/SMR3A.2_413_10000_0.2363_0.4266_0.3018.png
                gene_name: SMR3A
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 58 percent done.
SMS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.468901e-02	ci left: 3.300180e-01	ci right 3.486756e-01	k: 3393	n:10000
Cons ci ratio: 9.206414e-03	ci left: 9.432583e-01	ci right 9.520786e-01	k: 9478	n:10000
KS ci ratio: 7.342460e-02	ci left: 2.135905e-01	ci right 2.299719e-01	k: 2217	n:10000
SMS   10000 perm   2 sec   (6638 perm/sec)   p_kst 2.217000e-01   p_cons 9.478000e-01   p_joint 3.393000e-01

Outputting figure to mutsig2_images.part000000000163/SMS.2_1145_10000_0.2217_0.9478_0.3393.png
                gene_name: SMS
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 61 percent done.
SMTN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.501509e-02	ci left: 7.016014e-01	ci right 7.194758e-01	k: 7106	n:10000
Cons ci ratio: 5.453085e-02	ci left: 3.313090e-01	ci right 3.499839e-01	k: 3406	n:10000
KS ci ratio: 3.561095e-02	ci left: 5.379823e-01	ci right 5.575898e-01	k: 5478	n:10000
SMTN   10000 perm   2 sec   (5782 perm/sec)   p_kst 5.478000e-01   p_cons 3.406000e-01   p_joint 7.106000e-01

Outputting figure to mutsig2_images.part000000000163/SMTN.2_2979_10000_0.5478_0.3406_0.7106.png
                gene_name: SMTN
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 63 percent done.
SMURF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.544729e-01	ci left: 1.222067e-03	ci right 3.087156e-03	k: 20	n:10000
Cons ci ratio: 6.639309e-03	ci left: 9.687871e-01	ci right 9.753341e-01	k: 9722	n:10000
KS ci ratio: 8.544729e-01	ci left: 1.222067e-03	ci right 3.087156e-03	k: 20	n:10000
SMURF1   10000 perm   2 sec   (6044 perm/sec)   p_kst 2.000000e-03   p_cons 9.722000e-01   p_joint 2.000000e-03

Joint ci ratio: 5.971366e-01	ci left: 1.513902e-03	ci right 2.837541e-03	k: 42	n:20000
Cons ci ratio: 4.616806e-03	ci left: 9.707108e-01	ci right 9.752503e-01	k: 19461	n:20000
KS ci ratio: 5.971366e-01	ci left: 1.513902e-03	ci right 2.837541e-03	k: 42	n:20000
SMURF1   20000 perm   4 sec   (5396 perm/sec)   p_kst 2.100000e-03   p_cons 9.730500e-01   p_joint 2.100000e-03

Joint ci ratio: 5.142149e-01	ci left: 1.439349e-03	ci right 2.460979e-03	k: 57	n:30000
Cons ci ratio: 3.623736e-03	ci left: 9.732044e-01	ci right 9.767694e-01	k: 29251	n:30000
KS ci ratio: 5.142149e-01	ci left: 1.439349e-03	ci right 2.460979e-03	k: 57	n:30000
SMURF1   30000 perm   6 sec   (5146 perm/sec)   p_kst 1.900000e-03   p_cons 9.750333e-01   p_joint 1.900000e-03

Joint ci ratio: 4.434141e-01	ci left: 1.519469e-03	ci right 2.405341e-03	k: 77	n:40000
Cons ci ratio: 3.147957e-03	ci left: 9.732939e-01	ci right 9.763867e-01	k: 38995	n:40000
KS ci ratio: 4.434141e-01	ci left: 1.519469e-03	ci right 2.405341e-03	k: 77	n:40000
SMURF1   40000 perm   8 sec   (4971 perm/sec)   p_kst 1.925000e-03   p_cons 9.748750e-01   p_joint 1.925000e-03

Joint ci ratio: 3.955876e-01	ci left: 1.573482e-03	ci right 2.366130e-03	k: 97	n:50000
Cons ci ratio: 2.849351e-03	ci left: 9.728546e-01	ci right 9.756499e-01	k: 48714	n:50000
KS ci ratio: 3.955876e-01	ci left: 1.573482e-03	ci right 2.366130e-03	k: 97	n:50000
SMURF1   50000 perm   10 sec   (4831 perm/sec)   p_kst 1.940000e-03   p_cons 9.742800e-01   p_joint 1.940000e-03

Joint ci ratio: 3.461097e-01	ci left: 1.764866e-03	ci right 2.517926e-03	k: 127	n:60000
Cons ci ratio: 2.599901e-03	ci left: 9.730023e-01	ci right 9.755515e-01	k: 58458	n:60000
KS ci ratio: 3.461097e-01	ci left: 1.764866e-03	ci right 2.517926e-03	k: 127	n:60000
SMURF1   60000 perm   13 sec   (4718 perm/sec)   p_kst 2.116667e-03   p_cons 9.743000e-01   p_joint 2.116667e-03

Joint ci ratio: 3.186586e-01	ci left: 1.813945e-03	ci right 2.514063e-03	k: 150	n:70000
Cons ci ratio: 2.440359e-03	ci left: 9.723854e-01	ci right 9.747751e-01	k: 68152	n:70000
KS ci ratio: 3.186586e-01	ci left: 1.813945e-03	ci right 2.514063e-03	k: 150	n:70000
SMURF1   70000 perm   15 sec   (4619 perm/sec)   p_kst 2.142857e-03   p_cons 9.736000e-01   p_joint 2.142857e-03

Joint ci ratio: 2.918488e-01	ci left: 1.922005e-03	ci right 2.589913e-03	k: 179	n:80000
Cons ci ratio: 2.295407e-03	ci left: 9.721721e-01	ci right 9.744184e-01	k: 77865	n:80000
KS ci ratio: 2.918488e-01	ci left: 1.922005e-03	ci right 2.589913e-03	k: 179	n:80000
SMURF1   80000 perm   18 sec   (4518 perm/sec)   p_kst 2.237500e-03   p_cons 9.733125e-01   p_joint 2.237500e-03

Joint ci ratio: 2.761850e-01	ci left: 1.925174e-03	ci right 2.552045e-03	k: 200	n:90000
Cons ci ratio: 2.160897e-03	ci left: 9.723165e-01	ci right 9.744306e-01	k: 87605	n:90000
KS ci ratio: 2.761850e-01	ci left: 1.925174e-03	ci right 2.552045e-03	k: 200	n:90000
SMURF1   90000 perm   20 sec   (4427 perm/sec)   p_kst 2.222222e-03   p_cons 9.733889e-01   p_joint 2.222222e-03

Joint ci ratio: 2.559571e-01	ci left: 2.040691e-03	ci right 2.648750e-03	k: 233	n:100000
Cons ci ratio: 2.052297e-03	ci left: 9.723126e-01	ci right 9.743198e-01	k: 97333	n:100000
KS ci ratio: 2.559571e-01	ci left: 2.040691e-03	ci right 2.648750e-03	k: 233	n:100000
SMURF1   100000 perm   23 sec   (4340 perm/sec)   p_kst 2.330000e-03   p_cons 9.733300e-01   p_joint 2.330000e-03

Joint ci ratio: 2.456774e-01	ci left: 2.025565e-03	ci right 2.601178e-03	k: 253	n:110000
Cons ci ratio: 1.958915e-03	ci left: 9.723025e-01	ci right 9.742179e-01	k: 107060	n:110000
KS ci ratio: 2.456774e-01	ci left: 2.025565e-03	ci right 2.601178e-03	k: 253	n:110000
SMURF1   110000 perm   26 sec   (4258 perm/sec)   p_kst 2.300000e-03   p_cons 9.732727e-01   p_joint 2.300000e-03

Joint ci ratio: 2.344103e-01	ci left: 2.052580e-03	ci right 2.605244e-03	k: 278	n:120000
Cons ci ratio: 1.872708e-03	ci left: 9.724231e-01	ci right 9.742540e-01	k: 116802	n:120000
KS ci ratio: 2.344103e-01	ci left: 2.052580e-03	ci right 2.605244e-03	k: 278	n:120000
SMURF1   120000 perm   29 sec   (4181 perm/sec)   p_kst 2.316667e-03   p_cons 9.733500e-01   p_joint 2.316667e-03

Joint ci ratio: 2.268182e-01	ci left: 2.032399e-03	ci right 2.559426e-03	k: 297	n:130000
Cons ci ratio: 1.791070e-03	ci left: 9.726984e-01	ci right 9.744496e-01	k: 126566	n:130000
KS ci ratio: 2.268182e-01	ci left: 2.032399e-03	ci right 2.559426e-03	k: 297	n:130000
SMURF1   130000 perm   32 sec   (4109 perm/sec)   p_kst 2.284615e-03   p_cons 9.735846e-01   p_joint 2.284615e-03

Joint ci ratio: 2.185413e-01	ci left: 2.042353e-03	ci right 2.550041e-03	k: 320	n:140000
Cons ci ratio: 1.731369e-03	ci left: 9.725654e-01	ci right 9.742577e-01	k: 136279	n:140000
KS ci ratio: 2.185413e-01	ci left: 2.042353e-03	ci right 2.550041e-03	k: 320	n:140000
SMURF1   140000 perm   35 sec   (4038 perm/sec)   p_kst 2.285714e-03   p_cons 9.734214e-01   p_joint 2.285714e-03

Joint ci ratio: 2.104966e-01	ci left: 2.063914e-03	ci right 2.555640e-03	k: 345	n:150000
Cons ci ratio: 1.676998e-03	ci left: 9.724581e-01	ci right 9.740968e-01	k: 145993	n:150000
KS ci ratio: 2.104966e-01	ci left: 2.063914e-03	ci right 2.555640e-03	k: 345	n:150000
SMURF1   150000 perm   38 sec   (3971 perm/sec)   p_kst 2.300000e-03   p_cons 9.732867e-01   p_joint 2.300000e-03

Joint ci ratio: 2.049474e-01	ci left: 2.047491e-03	ci right 2.520834e-03	k: 364	n:160000
Cons ci ratio: 1.623709e-03	ci left: 9.724857e-01	ci right 9.740721e-01	k: 155726	n:160000
KS ci ratio: 2.049474e-01	ci left: 2.047491e-03	ci right 2.520834e-03	k: 364	n:160000
SMURF1   160000 perm   41 sec   (3909 perm/sec)   p_kst 2.275000e-03   p_cons 9.732875e-01   p_joint 2.275000e-03

Joint ci ratio: 1.995548e-01	ci left: 2.038739e-03	ci right 2.496147e-03	k: 384	n:170000
Cons ci ratio: 1.578934e-03	ci left: 9.723855e-01	ci right 9.739278e-01	k: 165438	n:170000
KS ci ratio: 1.995548e-01	ci left: 2.038739e-03	ci right 2.496147e-03	k: 384	n:170000
SMURF1   170000 perm   44 sec   (3850 perm/sec)   p_kst 2.258824e-03   p_cons 9.731647e-01   p_joint 2.258824e-03

Joint ci ratio: 1.929029e-01	ci left: 2.068111e-03	ci right 2.514828e-03	k: 411	n:180000
Cons ci ratio: 1.531769e-03	ci left: 9.724998e-01	ci right 9.739960e-01	k: 175186	n:180000
KS ci ratio: 1.929029e-01	ci left: 2.068111e-03	ci right 2.514828e-03	k: 411	n:180000
SMURF1   180000 perm   47 sec   (3790 perm/sec)   p_kst 2.283333e-03   p_cons 9.732556e-01   p_joint 2.283333e-03

Joint ci ratio: 1.870883e-01	ci left: 2.089599e-03	ci right 2.525808e-03	k: 437	n:190000
Cons ci ratio: 1.491142e-03	ci left: 9.725119e-01	ci right 9.739683e-01	k: 184917	n:190000
KS ci ratio: 1.870883e-01	ci left: 2.089599e-03	ci right 2.525808e-03	k: 437	n:190000
SMURF1   190000 perm   51 sec   (3735 perm/sec)   p_kst 2.300000e-03   p_cons 9.732474e-01   p_joint 2.300000e-03

Joint ci ratio: 1.811836e-01	ci left: 2.123440e-03	ci right 2.551188e-03	k: 466	n:200000
Cons ci ratio: 1.454561e-03	ci left: 9.724879e-01	ci right 9.739084e-01	k: 194641	n:200000
KS ci ratio: 1.811836e-01	ci left: 2.123440e-03	ci right 2.551188e-03	k: 466	n:200000
SMURF1   200000 perm   54 sec   (3682 perm/sec)   p_kst 2.330000e-03   p_cons 9.732050e-01   p_joint 2.330000e-03

Joint ci ratio: 1.774256e-01	ci left: 2.113287e-03	ci right 2.529213e-03	k: 486	n:210000
Cons ci ratio: 1.422873e-03	ci left: 9.723798e-01	ci right 9.737690e-01	k: 204347	n:210000
KS ci ratio: 1.774256e-01	ci left: 2.113287e-03	ci right 2.529213e-03	k: 486	n:210000
SMURF1   210000 perm   58 sec   (3629 perm/sec)   p_kst 2.314286e-03   p_cons 9.730810e-01   p_joint 2.314286e-03

Joint ci ratio: 1.730391e-01	ci left: 2.125882e-03	ci right 2.532862e-03	k: 511	n:220000
Cons ci ratio: 1.389889e-03	ci left: 9.724062e-01	ci right 9.737631e-01	k: 214080	n:220000
KS ci ratio: 1.730391e-01	ci left: 2.125882e-03	ci right 2.532862e-03	k: 511	n:220000
SMURF1   220000 perm   61 sec   (3580 perm/sec)   p_kst 2.322727e-03   p_cons 9.730909e-01   p_joint 2.322727e-03

Joint ci ratio: 1.683353e-01	ci left: 2.154156e-03	ci right 2.554202e-03	k: 540	n:230000
Cons ci ratio: 1.361354e-03	ci left: 9.723426e-01	ci right 9.736715e-01	k: 223793	n:230000
KS ci ratio: 1.683353e-01	ci left: 2.154156e-03	ci right 2.554202e-03	k: 540	n:230000
SMURF1   230000 perm   65 sec   (3529 perm/sec)   p_kst 2.347826e-03   p_cons 9.730130e-01   p_joint 2.347826e-03

Joint ci ratio: 1.651612e-01	ci left: 2.148248e-03	ci right 2.538926e-03	k: 561	n:240000
Cons ci ratio: 1.331854e-03	ci left: 9.723901e-01	ci right 9.736901e-01	k: 233531	n:240000
KS ci ratio: 1.651612e-01	ci left: 2.148248e-03	ci right 2.538926e-03	k: 561	n:240000
SMURF1   240000 perm   69 sec   (3482 perm/sec)   p_kst 2.337500e-03   p_cons 9.730458e-01   p_joint 2.337500e-03

Joint ci ratio: 1.617435e-01	ci left: 2.154392e-03	ci right 2.537292e-03	k: 585	n:250000
Cons ci ratio: 1.305087e-03	ci left: 9.723976e-01	ci right 9.736714e-01	k: 243260	n:250000
KS ci ratio: 1.617435e-01	ci left: 2.154392e-03	ci right 2.537292e-03	k: 585	n:250000
SMURF1   250000 perm   73 sec   (3436 perm/sec)   p_kst 2.340000e-03   p_cons 9.730400e-01   p_joint 2.340000e-03

Joint ci ratio: 1.583995e-01	ci left: 2.163834e-03	ci right 2.539705e-03	k: 610	n:260000
Cons ci ratio: 1.278651e-03	ci left: 9.724553e-01	ci right 9.737033e-01	k: 253002	n:260000
KS ci ratio: 1.583995e-01	ci left: 2.163834e-03	ci right 2.539705e-03	k: 610	n:260000
SMURF1   260000 perm   77 sec   (3390 perm/sec)   p_kst 2.346154e-03   p_cons 9.730846e-01   p_joint 2.346154e-03

Joint ci ratio: 1.545257e-01	ci left: 2.194014e-03	ci right 2.564945e-03	k: 641	n:270000
Cons ci ratio: 1.255087e-03	ci left: 9.724528e-01	ci right 9.736777e-01	k: 262729	n:270000
KS ci ratio: 1.545257e-01	ci left: 2.194014e-03	ci right 2.564945e-03	k: 641	n:270000
SMURF1   270000 perm   81 sec   (3345 perm/sec)   p_kst 2.374074e-03   p_cons 9.730704e-01   p_joint 2.374074e-03

Joint ci ratio: 1.514881e-01	ci left: 2.204960e-03	ci right 2.569748e-03	k: 667	n:280000
Cons ci ratio: 1.233870e-03	ci left: 9.724038e-01	ci right 9.736078e-01	k: 272443	n:280000
KS ci ratio: 1.514881e-01	ci left: 2.204960e-03	ci right 2.569748e-03	k: 667	n:280000
SMURF1   280000 perm   85 sec   (3301 perm/sec)   p_kst 2.382143e-03   p_cons 9.730107e-01   p_joint 2.382143e-03

Joint ci ratio: 1.492710e-01	ci left: 2.195296e-03	ci right 2.552696e-03	k: 687	n:290000
Cons ci ratio: 1.211859e-03	ci left: 9.724385e-01	ci right 9.736210e-01	k: 282180	n:290000
KS ci ratio: 1.492710e-01	ci left: 2.195296e-03	ci right 2.552696e-03	k: 687	n:290000
SMURF1   290000 perm   89 sec   (3261 perm/sec)   p_kst 2.368966e-03   p_cons 9.730345e-01   p_joint 2.368966e-03

Joint ci ratio: 1.465274e-01	ci left: 2.205580e-03	ci right 2.557476e-03	k: 713	n:300000
Cons ci ratio: 1.191514e-03	ci left: 9.724474e-01	ci right 9.736101e-01	k: 291910	n:300000
KS ci ratio: 1.465274e-01	ci left: 2.205580e-03	ci right 2.557476e-03	k: 713	n:300000
SMURF1   300000 perm   93 sec   (3222 perm/sec)   p_kst 2.376667e-03   p_cons 9.730333e-01   p_joint 2.376667e-03

Joint ci ratio: 1.444196e-01	ci left: 2.199708e-03	ci right 2.545184e-03	k: 734	n:310000
Cons ci ratio: 1.174032e-03	ci left: 9.723712e-01	ci right 9.735167e-01	k: 301614	n:310000
KS ci ratio: 1.444196e-01	ci left: 2.199708e-03	ci right 2.545184e-03	k: 734	n:310000
SMURF1   310000 perm   97 sec   (3182 perm/sec)   p_kst 2.367742e-03   p_cons 9.729484e-01   p_joint 2.367742e-03

Joint ci ratio: 1.413730e-01	ci left: 2.227394e-03	ci right 2.569217e-03	k: 766	n:320000
Cons ci ratio: 1.154338e-03	ci left: 9.724357e-01	ci right 9.735619e-01	k: 311361	n:320000
KS ci ratio: 1.413730e-01	ci left: 2.227394e-03	ci right 2.569217e-03	k: 766	n:320000
SMURF1   320000 perm   102 sec   (3143 perm/sec)   p_kst 2.393750e-03   p_cons 9.730031e-01   p_joint 2.393750e-03

Joint ci ratio: 1.396549e-01	ci left: 2.215448e-03	ci right 2.550961e-03	k: 785	n:330000
Cons ci ratio: 1.138352e-03	ci left: 9.723679e-01	ci right 9.734784e-01	k: 321066	n:330000
KS ci ratio: 1.396549e-01	ci left: 2.215448e-03	ci right 2.550961e-03	k: 785	n:330000
SMURF1   330000 perm   106 sec   (3106 perm/sec)   p_kst 2.378788e-03   p_cons 9.729273e-01   p_joint 2.378788e-03

Joint ci ratio: 1.379980e-01	ci left: 2.204229e-03	ci right 2.533756e-03	k: 804	n:340000
Cons ci ratio: 1.122128e-03	ci left: 9.723457e-01	ci right 9.734403e-01	k: 330785	n:340000
KS ci ratio: 1.379980e-01	ci left: 2.204229e-03	ci right 2.533756e-03	k: 804	n:340000
SMURF1   340000 perm   111 sec   (3070 perm/sec)   p_kst 2.364706e-03   p_cons 9.728971e-01   p_joint 2.364706e-03

Joint ci ratio: 1.353327e-01	ci left: 2.229555e-03	ci right 2.555914e-03	k: 836	n:350000
Cons ci ratio: 1.106817e-03	ci left: 9.723134e-01	ci right 9.733930e-01	k: 340500	n:350000
KS ci ratio: 1.353327e-01	ci left: 2.229555e-03	ci right 2.555914e-03	k: 836	n:350000
SMURF1   350000 perm   115 sec   (3035 perm/sec)   p_kst 2.388571e-03   p_cons 9.728571e-01   p_joint 2.388571e-03

Joint ci ratio: 1.330465e-01	ci left: 2.245476e-03	ci right 2.568173e-03	k: 865	n:360000
Cons ci ratio: 1.091138e-03	ci left: 9.723307e-01	ci right 9.733950e-01	k: 350232	n:360000
KS ci ratio: 1.330465e-01	ci left: 2.245476e-03	ci right 2.568173e-03	k: 865	n:360000
SMURF1   360000 perm   120 sec   (2998 perm/sec)   p_kst 2.402778e-03   p_cons 9.728667e-01   p_joint 2.402778e-03

Joint ci ratio: 1.307992e-01	ci left: 2.263194e-03	ci right 2.582517e-03	k: 895	n:370000
Cons ci ratio: 1.077703e-03	ci left: 9.722681e-01	ci right 9.733191e-01	k: 359935	n:370000
KS ci ratio: 1.307992e-01	ci left: 2.263194e-03	ci right 2.582517e-03	k: 895	n:370000
SMURF1   370000 perm   125 sec   (2963 perm/sec)   p_kst 2.418919e-03   p_cons 9.727973e-01   p_joint 2.418919e-03

Joint ci ratio: 1.294349e-01	ci left: 2.252007e-03	ci right 2.566183e-03	k: 914	n:380000
Cons ci ratio: 1.064113e-03	ci left: 9.722407e-01	ci right 9.732784e-01	k: 369650	n:380000
KS ci ratio: 1.294349e-01	ci left: 2.252007e-03	ci right 2.566183e-03	k: 914	n:380000
SMURF1   380000 perm   130 sec   (2929 perm/sec)   p_kst 2.405263e-03   p_cons 9.727632e-01   p_joint 2.405263e-03

Joint ci ratio: 1.279752e-01	ci left: 2.246376e-03	ci right 2.555963e-03	k: 935	n:390000
Cons ci ratio: 1.050769e-03	ci left: 9.722277e-01	ci right 9.732524e-01	k: 379370	n:390000
KS ci ratio: 1.279752e-01	ci left: 2.246376e-03	ci right 2.555963e-03	k: 935	n:390000
SMURF1   390000 perm   135 sec   (2895 perm/sec)   p_kst 2.397436e-03   p_cons 9.727436e-01   p_joint 2.397436e-03

Joint ci ratio: 1.261679e-01	ci left: 2.255571e-03	ci right 2.561708e-03	k: 962	n:400000
Cons ci ratio: 1.036788e-03	ci left: 9.722736e-01	ci right 9.732846e-01	k: 389113	n:400000
KS ci ratio: 1.261679e-01	ci left: 2.255571e-03	ci right 2.561708e-03	k: 962	n:400000
SMURF1   400000 perm   140 sec   (2863 perm/sec)   p_kst 2.405000e-03   p_cons 9.727825e-01   p_joint 2.405000e-03

Joint ci ratio: 1.241213e-01	ci left: 2.276164e-03	ci right 2.579716e-03	k: 994	n:410000
Cons ci ratio: 1.025236e-03	ci left: 9.722188e-01	ci right 9.732184e-01	k: 398816	n:410000
KS ci ratio: 1.241213e-01	ci left: 2.276164e-03	ci right 2.579716e-03	k: 994	n:410000
SMURF1   410000 perm   145 sec   (2831 perm/sec)   p_kst 2.424390e-03   p_cons 9.727220e-01   p_joint 2.424390e-03

Joint ci ratio: 1.227718e-01	ci left: 2.272733e-03	ci right 2.572293e-03	k: 1016	n:420000
Cons ci ratio: 1.011693e-03	ci left: 9.722916e-01	ci right 9.732781e-01	k: 408571	n:420000
KS ci ratio: 1.227718e-01	ci left: 2.272733e-03	ci right 2.572293e-03	k: 1016	n:420000
SMURF1   420000 perm   150 sec   (2800 perm/sec)   p_kst 2.419048e-03   p_cons 9.727881e-01   p_joint 2.419048e-03

Joint ci ratio: 1.205958e-01	ci left: 2.303309e-03	ci right 2.601134e-03	k: 1053	n:430000
Cons ci ratio: 9.996341e-04	ci left: 9.723094e-01	ci right 9.732842e-01	k: 418304	n:430000
KS ci ratio: 1.205958e-01	ci left: 2.303309e-03	ci right 2.601134e-03	k: 1053	n:430000
SMURF1   430000 perm   155 sec   (2770 perm/sec)   p_kst 2.448837e-03   p_cons 9.728000e-01   p_joint 2.448837e-03

Joint ci ratio: 1.191905e-01	ci left: 2.306075e-03	ci right 2.600538e-03	k: 1078	n:440000
Cons ci ratio: 9.881236e-04	ci left: 9.723197e-01	ci right 9.732832e-01	k: 428034	n:440000
KS ci ratio: 1.191905e-01	ci left: 2.306075e-03	ci right 2.600538e-03	k: 1078	n:440000
SMURF1   440000 perm   161 sec   (2739 perm/sec)   p_kst 2.450000e-03   p_cons 9.728045e-01   p_joint 2.450000e-03

Joint ci ratio: 1.182095e-01	ci left: 2.293640e-03	ci right 2.583936e-03	k: 1096	n:450000
Cons ci ratio: 9.762218e-04	ci left: 9.723721e-01	ci right 9.733240e-01	k: 437783	n:450000
KS ci ratio: 1.182095e-01	ci left: 2.293640e-03	ci right 2.583936e-03	k: 1096	n:450000
SMURF1   450000 perm   166 sec   (2710 perm/sec)   p_kst 2.435556e-03   p_cons 9.728511e-01   p_joint 2.435556e-03

Joint ci ratio: 1.172522e-01	ci left: 2.281756e-03	ci right 2.568047e-03	k: 1114	n:460000
Cons ci ratio: 9.652540e-04	ci left: 9.723938e-01	ci right 9.733350e-01	k: 447519	n:460000
KS ci ratio: 1.172522e-01	ci left: 2.281756e-03	ci right 2.568047e-03	k: 1114	n:460000
SMURF1   460000 perm   172 sec   (2682 perm/sec)   p_kst 2.421739e-03   p_cons 9.728674e-01   p_joint 2.421739e-03

Joint ci ratio: 1.162665e-01	ci left: 2.272452e-03	ci right 2.555014e-03	k: 1133	n:470000
Cons ci ratio: 9.537617e-04	ci left: 9.724640e-01	ci right 9.733940e-01	k: 457278	n:470000
KS ci ratio: 1.162665e-01	ci left: 2.272452e-03	ci right 2.555014e-03	k: 1133	n:470000
SMURF1   470000 perm   177 sec   (2654 perm/sec)   p_kst 2.410638e-03   p_cons 9.729319e-01   p_joint 2.410638e-03

Joint ci ratio: 1.149559e-01	ci left: 2.277710e-03	ci right 2.557517e-03	k: 1159	n:480000
Cons ci ratio: 9.438603e-04	ci left: 9.724640e-01	ci right 9.733844e-01	k: 467005	n:480000
KS ci ratio: 1.149559e-01	ci left: 2.277710e-03	ci right 2.557517e-03	k: 1159	n:480000
SMURF1   480000 perm   183 sec   (2626 perm/sec)   p_kst 2.414583e-03   p_cons 9.729271e-01   p_joint 2.414583e-03

Joint ci ratio: 1.136406e-01	ci left: 2.284753e-03	ci right 2.561999e-03	k: 1186	n:490000
Cons ci ratio: 9.344780e-04	ci left: 9.724518e-01	ci right 9.733630e-01	k: 476726	n:490000
KS ci ratio: 1.136406e-01	ci left: 2.284753e-03	ci right 2.561999e-03	k: 1186	n:490000
SMURF1   490000 perm   189 sec   (2599 perm/sec)   p_kst 2.420408e-03   p_cons 9.729102e-01   p_joint 2.420408e-03

Joint ci ratio: 1.128833e-01	ci left: 2.270151e-03	ci right 2.543666e-03	k: 1202	n:500000
Cons ci ratio: 9.248784e-04	ci left: 9.724684e-01	ci right 9.733702e-01	k: 486461	n:500000
KS ci ratio: 1.128833e-01	ci left: 2.270151e-03	ci right 2.543666e-03	k: 1202	n:500000
SMURF1   500000 perm   194 sec   (2574 perm/sec)   p_kst 2.404000e-03   p_cons 9.729220e-01   p_joint 2.404000e-03

Joint ci ratio: 1.119570e-01	ci left: 2.263750e-03	ci right 2.534109e-03	k: 1222	n:510000
Cons ci ratio: 9.164883e-04	ci left: 9.724309e-01	ci right 9.733245e-01	k: 496169	n:510000
KS ci ratio: 1.119570e-01	ci left: 2.263750e-03	ci right 2.534109e-03	k: 1222	n:510000
SMURF1   510000 perm   200 sec   (2548 perm/sec)   p_kst 2.396078e-03   p_cons 9.728804e-01   p_joint 2.396078e-03

Joint ci ratio: 1.107853e-01	ci left: 2.268824e-03	ci right 2.536768e-03	k: 1248	n:520000
Cons ci ratio: 9.082213e-04	ci left: 9.724008e-01	ci right 9.732862e-01	k: 505880	n:520000
KS ci ratio: 1.107853e-01	ci left: 2.268824e-03	ci right 2.536768e-03	k: 1248	n:520000
SMURF1   520000 perm   207 sec   (2516 perm/sec)   p_kst 2.400000e-03   p_cons 9.728462e-01   p_joint 2.400000e-03

Joint ci ratio: 1.099962e-01	ci left: 2.259040e-03	ci right 2.523805e-03	k: 1266	n:530000
Cons ci ratio: 8.999157e-04	ci left: 9.723871e-01	ci right 9.732644e-01	k: 515599	n:530000
KS ci ratio: 1.099962e-01	ci left: 2.259040e-03	ci right 2.523805e-03	k: 1266	n:530000
SMURF1   530000 perm   213 sec   (2491 perm/sec)   p_kst 2.388679e-03   p_cons 9.728283e-01   p_joint 2.388679e-03

Joint ci ratio: 1.086321e-01	ci left: 2.274846e-03	ci right 2.537945e-03	k: 1298	n:540000
Cons ci ratio: 8.917087e-04	ci left: 9.723813e-01	ci right 9.732506e-01	k: 525322	n:540000
KS ci ratio: 1.086321e-01	ci left: 2.274846e-03	ci right 2.537945e-03	k: 1298	n:540000
SMURF1   540000 perm   219 sec   (2467 perm/sec)   p_kst 2.403704e-03   p_cons 9.728185e-01   p_joint 2.403704e-03

Joint ci ratio: 1.079288e-01	ci left: 2.263557e-03	ci right 2.523548e-03	k: 1315	n:550000
Cons ci ratio: 8.842686e-04	ci left: 9.723429e-01	ci right 9.732049e-01	k: 535027	n:550000
KS ci ratio: 1.079288e-01	ci left: 2.263557e-03	ci right 2.523548e-03	k: 1315	n:550000
SMURF1   550000 perm   225 sec   (2442 perm/sec)   p_kst 2.390909e-03   p_cons 9.727764e-01   p_joint 2.390909e-03

Joint ci ratio: 1.071585e-01	ci left: 2.256151e-03	ci right 2.513326e-03	k: 1334	n:560000
Cons ci ratio: 8.763303e-04	ci left: 9.723472e-01	ci right 9.732014e-01	k: 544755	n:560000
KS ci ratio: 1.071585e-01	ci left: 2.256151e-03	ci right 2.513326e-03	k: 1334	n:560000
SMURF1   560000 perm   231 sec   (2420 perm/sec)   p_kst 2.382143e-03   p_cons 9.727768e-01   p_joint 2.382143e-03

Joint ci ratio: 1.060518e-01	ci left: 2.264383e-03	ci right 2.519664e-03	k: 1362	n:570000
Cons ci ratio: 8.688034e-04	ci left: 9.723391e-01	ci right 9.731859e-01	k: 554476	n:570000
KS ci ratio: 1.060518e-01	ci left: 2.264383e-03	ci right 2.519664e-03	k: 1362	n:570000
SMURF1   570000 perm   238 sec   (2397 perm/sec)   p_kst 2.389474e-03   p_cons 9.727649e-01   p_joint 2.389474e-03

Joint ci ratio: 1.048276e-01	ci left: 2.279061e-03	ci right 2.532847e-03	k: 1394	n:580000
Cons ci ratio: 8.614391e-04	ci left: 9.723330e-01	ci right 9.731726e-01	k: 564198	n:580000
KS ci ratio: 1.048276e-01	ci left: 2.279061e-03	ci right 2.532847e-03	k: 1394	n:580000
SMURF1   580000 perm   244 sec   (2375 perm/sec)   p_kst 2.403448e-03   p_cons 9.727552e-01   p_joint 2.403448e-03

Joint ci ratio: 1.039007e-01	ci left: 2.281699e-03	ci right 2.533396e-03	k: 1419	n:590000
Cons ci ratio: 8.534939e-04	ci left: 9.723749e-01	ci right 9.732069e-01	k: 573948	n:590000
KS ci ratio: 1.039007e-01	ci left: 2.281699e-03	ci right 2.533396e-03	k: 1419	n:590000
SMURF1   590000 perm   251 sec   (2353 perm/sec)   p_kst 2.405085e-03   p_cons 9.727932e-01   p_joint 2.405085e-03

Joint ci ratio: 1.030336e-01	ci left: 2.282636e-03	ci right 2.532207e-03	k: 1443	n:600000
Cons ci ratio: 8.456829e-04	ci left: 9.724205e-01	ci right 9.732449e-01	k: 583701	n:600000
KS ci ratio: 1.030336e-01	ci left: 2.282636e-03	ci right 2.532207e-03	k: 1443	n:600000
SMURF1   600000 perm   257 sec   (2331 perm/sec)   p_kst 2.405000e-03   p_cons 9.728350e-01   p_joint 2.405000e-03

Joint ci ratio: 1.022927e-01	ci left: 2.278758e-03	ci right 2.526006e-03	k: 1464	n:610000
Cons ci ratio: 8.390433e-04	ci left: 9.724036e-01	ci right 9.732214e-01	k: 593417	n:610000
KS ci ratio: 1.022927e-01	ci left: 2.278758e-03	ci right 2.526006e-03	k: 1464	n:610000
SMURF1   610000 perm   264 sec   (2311 perm/sec)   p_kst 2.400000e-03   p_cons 9.728148e-01   p_joint 2.400000e-03

Joint ci ratio: 1.012268e-01	ci left: 2.290732e-03	ci right 2.536535e-03	k: 1495	n:620000
Cons ci ratio: 8.324303e-04	ci left: 9.723953e-01	ci right 9.732067e-01	k: 603138	n:620000
KS ci ratio: 1.012268e-01	ci left: 2.290732e-03	ci right 2.536535e-03	k: 1495	n:620000
SMURF1   620000 perm   271 sec   (2291 perm/sec)   p_kst 2.411290e-03   p_cons 9.728032e-01   p_joint 2.411290e-03

Joint ci ratio: 1.003913e-01	ci left: 2.293053e-03	ci right 2.536955e-03	k: 1520	n:630000
Cons ci ratio: 8.258473e-04	ci left: 9.723954e-01	ci right 9.732003e-01	k: 612864	n:630000
KS ci ratio: 1.003913e-01	ci left: 2.293053e-03	ci right 2.536955e-03	k: 1520	n:630000
SMURF1   630000 perm   277 sec   (2271 perm/sec)   p_kst 2.412698e-03   p_cons 9.728000e-01   p_joint 2.412698e-03

Joint ci ratio: 9.947955e-02	ci left: 2.299881e-03	ci right 2.542158e-03	k: 1548	n:640000
Cons ci ratio: 8.194906e-04	ci left: 9.723907e-01	ci right 9.731894e-01	k: 622587	n:640000
KS ci ratio: 9.947955e-02	ci left: 2.299881e-03	ci right 2.542158e-03	k: 1548	n:640000
SMURF1   640000 perm   284 sec   (2252 perm/sec)   p_kst 2.418750e-03   p_cons 9.727922e-01   p_joint 2.418750e-03

Outputting figure to mutsig2_images.part000000000163/SMURF1.2_2350_640000_0.0024187_0.97279_0.0024187.png
                gene_name: SMURF1
               theta_stop: 0.099 
                    nperm: 640000 
                     p_ks: 0.0024 
        ci_ks_bounds_left: 0.0023 
       ci_ks_bounds_right: 0.0025 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.0024 
     ci_joint_bounds_left: 0.0023 
    ci_joint_bounds_right: 0.0025 

Current progress: 66 percent done.
SMYD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.327479e-01	ci left: 7.485257e-02	ci right 8.559347e-02	k: 801	n:10000
Cons ci ratio: 2.248291e-01	ci left: 2.617677e-02	ci right 3.290101e-02	k: 294	n:10000
KS ci ratio: 3.312167e-02	ci left: 5.736643e-01	ci right 5.930871e-01	k: 5834	n:10000
SMYD2   10000 perm   2 sec   (6555 perm/sec)   p_kst 5.834000e-01   p_cons 2.940000e-02   p_joint 8.010000e-02

Joint ci ratio: 1.710052e-01	ci left: 2.340739e-02	ci right 2.783199e-02	k: 511	n:20000
Cons ci ratio: 1.580186e-01	ci left: 2.748703e-02	ci right 3.225095e-02	k: 596	n:20000
KS ci ratio: 2.329447e-02	ci left: 5.791868e-01	ci right 5.928882e-01	k: 11721	n:20000
SMYD2   20000 perm   3 sec   (5839 perm/sec)   p_kst 5.860500e-01   p_cons 2.980000e-02   p_joint 2.555000e-02

Joint ci ratio: 1.180231e-01	ci left: 3.336977e-02	ci right 3.758748e-02	k: 1063	n:30000
Cons ci ratio: 1.304178e-01	ci left: 2.732382e-02	ci right 3.116807e-02	k: 876	n:30000
KS ci ratio: 1.907842e-02	ci left: 5.789656e-01	ci right 5.901513e-01	k: 17537	n:30000
SMYD2   30000 perm   5 sec   (5548 perm/sec)   p_kst 5.845667e-01   p_cons 2.920000e-02   p_joint 3.543333e-02

Joint ci ratio: 1.018276e-01	ci left: 3.390300e-02	ci right 3.756480e-02	k: 1428	n:40000
Cons ci ratio: 1.117373e-01	ci left: 2.817971e-02	ci right 3.153900e-02	k: 1193	n:40000
KS ci ratio: 1.660319e-02	ci left: 5.773484e-01	ci right 5.870396e-01	k: 23288	n:40000
SMYD2   40000 perm   7 sec   (5353 perm/sec)   p_kst 5.822000e-01   p_cons 2.982500e-02   p_joint 3.570000e-02

Joint ci ratio: 9.074224e-02	ci left: 3.434499e-02	ci right 3.762917e-02	k: 1798	n:50000
Cons ci ratio: 9.877054e-02	ci left: 2.902957e-02	ci right 3.206526e-02	k: 1526	n:50000
KS ci ratio: 1.489504e-02	ci left: 5.764003e-01	ci right 5.850703e-01	k: 29037	n:50000
SMYD2   50000 perm   10 sec   (5202 perm/sec)   p_kst 5.807400e-01   p_cons 3.052000e-02   p_joint 3.596000e-02

Outputting figure to mutsig2_images.part000000000163/SMYD2.2_1350_50000_0.58074_0.03052_0.03596.png
                gene_name: SMYD2
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.031 
      ci_cons_bounds_left: 0.029 
     ci_cons_bounds_right: 0.032 
                  p_joint: 0.036 
     ci_joint_bounds_left: 0.034 
    ci_joint_bounds_right: 0.038 

Current progress: 68 percent done.
SNAPC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.614730e-02	ci left: 3.184024e-01	ci right 3.368981e-01	k: 3276	n:10000
Cons ci ratio: 1.940461e-02	ci left: 7.952698e-01	ci right 8.109533e-01	k: 8032	n:10000
KS ci ratio: 1.687404e-01	ci left: 4.686539e-02	ci right 5.559839e-02	k: 511	n:10000
SNAPC1   10000 perm   1 sec   (6702 perm/sec)   p_kst 5.110000e-02   p_cons 8.032000e-01   p_joint 3.276000e-01

Joint ci ratio: 2.908611e-02	ci left: 4.689575e-01	ci right 4.828495e-01	k: 9518	n:20000
Cons ci ratio: 1.386605e-02	ci left: 7.942364e-01	ci right 8.053763e-01	k: 15997	n:20000
KS ci ratio: 1.202513e-01	ci left: 4.740861e-02	ci right 5.352292e-02	k: 1008	n:20000
SNAPC1   20000 perm   3 sec   (5932 perm/sec)   p_kst 5.040000e-02   p_cons 7.998500e-01   p_joint 4.759000e-01

Joint ci ratio: 2.113687e-02	ci left: 5.284355e-01	ci right 5.397579e-01	k: 16023	n:30000
Cons ci ratio: 1.134920e-02	ci left: 7.944869e-01	ci right 8.035885e-01	k: 23972	n:30000
KS ci ratio: 9.820257e-02	ci left: 4.795141e-02	ci right 5.293611e-02	k: 1512	n:30000
SNAPC1   30000 perm   5 sec   (5632 perm/sec)   p_kst 5.040000e-02   p_cons 7.990667e-01   p_joint 5.341000e-01

Outputting figure to mutsig2_images.part000000000163/SNAPC1.2_1147_30000_0.0504_0.79907_0.5341.png
                gene_name: SNAPC1
               theta_stop: 0.098 
                    nperm: 30000 
                     p_ks: 0.050 
        ci_ks_bounds_left: 0.048 
       ci_ks_bounds_right: 0.053 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.54 

Current progress: 71 percent done.
SND1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.388548e-02	ci left: 4.339301e-01	ci right 4.535027e-01	k: 4437	n:10000
Cons ci ratio: 6.941318e-02	ci left: 2.333353e-01	ci right 2.502154e-01	k: 2417	n:10000
KS ci ratio: 1.118988e-01	ci left: 1.031515e-01	ci right 1.154771e-01	k: 1092	n:10000
SND1   10000 perm   2 sec   (5882 perm/sec)   p_kst 1.092000e-01   p_cons 2.417000e-01   p_joint 4.437000e-01

Joint ci ratio: 5.554933e-02	ci left: 1.937827e-01	ci right 2.049049e-01	k: 3986	n:20000
Cons ci ratio: 4.600889e-02	ci left: 2.601337e-01	ci right 2.724343e-01	k: 5325	n:20000
KS ci ratio: 7.914620e-02	ci left: 1.049095e-01	ci right 1.136044e-01	k: 2184	n:20000
SND1   20000 perm   4 sec   (5253 perm/sec)   p_kst 1.092000e-01   p_cons 2.662500e-01   p_joint 1.993000e-01

Outputting figure to mutsig2_images.part000000000163/SND1.2_2829_20000_0.1092_0.26625_0.1993.png
                gene_name: SND1
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 74 percent done.
SNED1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.927855e-01	ci left: 3.586235e-02	ci right 4.360871e-02	k: 396	n:10000
Cons ci ratio: 3.113784e-01	ci left: 1.317075e-02	ci right 1.811726e-02	k: 155	n:10000
KS ci ratio: 7.146083e-02	ci left: 2.229660e-01	ci right 2.395908e-01	k: 2312	n:10000
SNED1   10000 perm   2 sec   (5449 perm/sec)   p_kst 2.312000e-01   p_cons 1.550000e-02   p_joint 3.960000e-02

Joint ci ratio: 1.897147e-01	ci left: 1.891468e-02	ci right 2.292630e-02	k: 417	n:20000
Cons ci ratio: 2.277143e-01	ci left: 1.293634e-02	ci right 1.630694e-02	k: 291	n:20000
KS ci ratio: 5.073069e-02	ci left: 2.240336e-01	ci right 2.357450e-01	k: 4597	n:20000
SNED1   20000 perm   4 sec   (4892 perm/sec)   p_kst 2.298500e-01   p_cons 1.455000e-02   p_joint 2.085000e-02

Joint ci ratio: 1.870157e-01	ci left: 1.308242e-02	ci right 1.581280e-02	k: 432	n:30000
Cons ci ratio: 1.844395e-01	ci left: 1.346407e-02	ci right 1.623106e-02	k: 444	n:30000
KS ci ratio: 4.133986e-02	ci left: 2.258101e-01	ci right 2.353755e-01	k: 6917	n:30000
SNED1   30000 perm   6 sec   (4657 perm/sec)   p_kst 2.305667e-01   p_cons 1.480000e-02   p_joint 1.440000e-02

Joint ci ratio: 1.801367e-01	ci left: 1.064539e-02	ci right 1.277639e-02	k: 467	n:40000
Cons ci ratio: 1.599124e-01	ci left: 1.361547e-02	ci right 1.600573e-02	k: 591	n:40000
KS ci ratio: 3.567327e-02	ci left: 2.277214e-01	ci right 2.360175e-01	k: 9274	n:40000
SNED1   40000 perm   9 sec   (4501 perm/sec)   p_kst 2.318500e-01   p_cons 1.477500e-02   p_joint 1.167500e-02

Joint ci ratio: 1.342733e-01	ci left: 1.563358e-02	ci right 1.790302e-02	k: 837	n:50000
Cons ci ratio: 1.431285e-01	ci left: 1.372124e-02	ci right 1.585564e-02	k: 738	n:50000
KS ci ratio: 3.194798e-02	ci left: 2.277091e-01	ci right 2.351221e-01	k: 11570	n:50000
SNED1   50000 perm   11 sec   (4385 perm/sec)   p_kst 2.314000e-01   p_cons 1.476000e-02   p_joint 1.674000e-02

Joint ci ratio: 1.389914e-01	ci left: 1.217329e-02	ci right 1.400759e-02	k: 784	n:60000
Cons ci ratio: 1.302710e-01	ci left: 1.389738e-02	ci right 1.584995e-02	k: 891	n:60000
KS ci ratio: 2.927304e-02	ci left: 2.267204e-01	ci right 2.334724e-01	k: 13805	n:60000
SNED1   60000 perm   14 sec   (4288 perm/sec)   p_kst 2.300833e-01   p_cons 1.485000e-02   p_joint 1.306667e-02

Joint ci ratio: 1.293146e-01	ci left: 1.211864e-02	ci right 1.380780e-02	k: 906	n:70000
Cons ci ratio: 1.220847e-01	ci left: 1.362748e-02	ci right 1.541310e-02	k: 1015	n:70000
KS ci ratio: 2.715414e-02	ci left: 2.262895e-01	ci right 2.325330e-01	k: 16058	n:70000
SNED1   70000 perm   17 sec   (4199 perm/sec)   p_kst 2.294000e-01   p_cons 1.450000e-02   p_joint 1.294286e-02

Joint ci ratio: 9.726288e-02	ci left: 1.893123e-02	ci right 2.087880e-02	k: 1591	n:80000
Cons ci ratio: 1.141074e-01	ci left: 1.370733e-02	ci right 1.537814e-02	k: 1162	n:80000
KS ci ratio: 2.545090e-02	ci left: 2.257933e-01	ci right 2.316264e-01	k: 18296	n:80000
SNED1   80000 perm   19 sec   (4129 perm/sec)   p_kst 2.287000e-01   p_cons 1.452500e-02   p_joint 1.988750e-02

Joint ci ratio: 9.175267e-02	ci left: 1.896495e-02	ci right 2.079951e-02	k: 1788	n:90000
Cons ci ratio: 1.078064e-01	ci left: 1.369670e-02	ci right 1.526816e-02	k: 1302	n:90000
KS ci ratio: 2.403860e-02	ci left: 2.253287e-01	ci right 2.308222e-01	k: 20526	n:90000
SNED1   90000 perm   22 sec   (4063 perm/sec)   p_kst 2.280667e-01   p_cons 1.446667e-02   p_joint 1.986667e-02

Joint ci ratio: 8.739883e-02	ci left: 1.885742e-02	ci right 2.059059e-02	k: 1971	n:100000
Cons ci ratio: 1.031738e-01	ci left: 1.349530e-02	ci right 1.497307e-02	k: 1422	n:100000
KS ci ratio: 2.279193e-02	ci left: 2.256715e-01	ci right 2.308842e-01	k: 22827	n:100000
SNED1   100000 perm   25 sec   (3991 perm/sec)   p_kst 2.282700e-01   p_cons 1.422000e-02   p_joint 1.971000e-02

Joint ci ratio: 1.024422e-01	ci left: 1.246297e-02	ci right 1.381743e-02	k: 1444	n:110000
Cons ci ratio: 9.867015e-02	ci left: 1.344701e-02	ci right 1.485150e-02	k: 1555	n:110000
KS ci ratio: 2.169197e-02	ci left: 2.264289e-01	ci right 2.314035e-01	k: 25180	n:110000
SNED1   110000 perm   28 sec   (3921 perm/sec)   p_kst 2.289091e-01   p_cons 1.413636e-02   p_joint 1.312727e-02

Joint ci ratio: 1.005790e-01	ci left: 1.187090e-02	ci right 1.313616e-02	k: 1499	n:120000
Cons ci ratio: 9.476596e-02	ci left: 1.339167e-02	ci right 1.473196e-02	k: 1686	n:120000
KS ci ratio: 2.077544e-02	ci left: 2.264174e-01	ci right 2.311790e-01	k: 27455	n:120000
SNED1   120000 perm   31 sec   (3854 perm/sec)   p_kst 2.287917e-01   p_cons 1.405000e-02   p_joint 1.249167e-02

Joint ci ratio: 9.657302e-02	ci left: 1.191061e-02	ci right 1.312667e-02	k: 1626	n:130000
Cons ci ratio: 9.098722e-02	ci left: 1.343601e-02	ci right 1.472426e-02	k: 1829	n:130000
KS ci ratio: 1.998392e-02	ci left: 2.260972e-01	ci right 2.306688e-01	k: 29689	n:130000
SNED1   130000 perm   34 sec   (3791 perm/sec)   p_kst 2.283769e-01   p_cons 1.406923e-02   p_joint 1.250769e-02

Outputting figure to mutsig2_images.part000000000163/SNED1.2_4366_130000_0.22838_0.014069_0.012508.png
                gene_name: SNED1
               theta_stop: 0.097 
                    nperm: 130000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.014 
      ci_cons_bounds_left: 0.013 
     ci_cons_bounds_right: 0.015 
                  p_joint: 0.013 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.013 

Current progress: 76 percent done.
SNRPA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.743974e-02	ci left: 8.273742e-01	ci right 8.420303e-01	k: 8348	n:10000
Cons ci ratio: 5.397717e-02	ci left: 3.358779e-01	ci right 3.546124e-01	k: 3452	n:10000
KS ci ratio: 1.593649e-02	ci left: 8.512085e-01	ci right 8.649822e-01	k: 8582	n:10000
SNRPA   10000 perm   1 sec   (6695 perm/sec)   p_kst 8.582000e-01   p_cons 3.452000e-01   p_joint 8.348000e-01

Outputting figure to mutsig2_images.part000000000163/SNRPA.2_873_10000_0.8582_0.3452_0.8348.png
                gene_name: SNRPA
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 79 percent done.
SNRPD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.205248e-02	ci left: 7.510997e-01	ci right 7.679489e-01	k: 7596	n:10000
Cons ci ratio: 1.883211e-02	ci left: 8.047094e-01	ci right 8.201081e-01	k: 8125	n:10000
KS ci ratio: 2.380295e-02	ci left: 7.217883e-01	ci right 7.392772e-01	k: 7306	n:10000
SNRPD1   10000 perm   1 sec   (7042 perm/sec)   p_kst 7.306000e-01   p_cons 8.125000e-01   p_joint 7.596000e-01

Outputting figure to mutsig2_images.part000000000163/SNRPD1.2_376_10000_0.7306_0.8125_0.7596.png
                gene_name: SNRPD1
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 82 percent done.
SNTA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.068591e-02	ci left: 6.104028e-01	ci right 6.295273e-01	k: 6200	n:10000
KS ci ratio: 3.821876e-02	ci left: 5.027508e-01	ci right 5.224418e-01	k: 5126	n:10000
SNTA1   10000 perm   2 sec   (6428 perm/sec)   p_kst 5.126000e-01   p_cons 6.200000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000163/SNTA1.2_1550_10000_0.5126_0.62_1.png
                gene_name: SNTA1
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
SNW1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.019175e-03	ci left: 9.925085e-01	ci right 9.955930e-01	k: 9942	n:10000
KS ci ratio: 1.527287e-01	ci left: 5.706232e-02	ci right 6.659491e-02	k: 617	n:10000
SNW1   10000 perm   2 sec   (6629 perm/sec)   p_kst 6.170000e-02   p_cons 9.942000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 2.079841e-03	ci left: 9.933202e-01	ci right 9.954322e-01	k: 19889	n:20000
KS ci ratio: 1.068959e-01	ci left: 5.962273e-02	ci right 6.640500e-02	k: 1259	n:20000
SNW1   20000 perm   3 sec   (5876 perm/sec)   p_kst 6.295000e-02   p_cons 9.944500e-01   p_joint 1

Joint ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
Cons ci ratio: 1.598832e-03	ci left: 9.942073e-01	ci right 9.958279e-01	k: 29852	n:30000
KS ci ratio: 8.818052e-02	ci left: 5.906845e-02	ci right 6.455012e-02	k: 1853	n:30000
SNW1   30000 perm   5 sec   (5579 perm/sec)   p_kst 6.176667e-02   p_cons 9.950667e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000163/SNW1.2_1667_30000_0.061767_0.99507_1.png
                gene_name: SNW1
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.062 
        ci_ks_bounds_left: 0.059 
       ci_ks_bounds_right: 0.065 
                   p_cons: 1.00 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 1.00 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
SNX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.905421e-03	ci left: 9.570190e-01	ci right 9.647096e-01	k: 9610	n:10000
Cons ci ratio: 5.345604e-02	ci left: 3.402490e-01	ci right 3.590387e-01	k: 3496	n:10000
KS ci ratio: 5.431310e-02	ci left: 3.330967e-01	ci right 3.517951e-01	k: 3424	n:10000
SNX1   10000 perm   2 sec   (6377 perm/sec)   p_kst 3.424000e-01   p_cons 3.496000e-01   p_joint 9.610000e-01

Outputting figure to mutsig2_images.part000000000163/SNX1.2_1629_10000_0.3424_0.3496_0.961.png
                gene_name: SNX1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.96 

Current progress: 89 percent done.
SNX14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.117267e-01	ci left: 1.034441e-01	ci right 1.157844e-01	k: 1095	n:10000
Cons ci ratio: 2.297566e-02	ci left: 7.356292e-01	ci right 7.528283e-01	k: 7443	n:10000
KS ci ratio: 1.367749e-01	ci left: 7.068651e-02	ci right 8.116213e-02	k: 758	n:10000
SNX14   10000 perm   2 sec   (5825 perm/sec)   p_kst 7.580000e-02   p_cons 7.443000e-01   p_joint 1.095000e-01

Joint ci ratio: 7.175291e-02	ci left: 1.251713e-01	ci right 1.345366e-01	k: 2596	n:20000
Cons ci ratio: 1.627203e-02	ci left: 7.375891e-01	ci right 7.497399e-01	k: 14874	n:20000
KS ci ratio: 9.444622e-02	ci left: 7.554264e-02	ci right 8.308021e-02	k: 1585	n:20000
SNX14   20000 perm   4 sec   (5219 perm/sec)   p_kst 7.925000e-02   p_cons 7.437000e-01   p_joint 1.298000e-01

Outputting figure to mutsig2_images.part000000000163/SNX14.2_2957_20000_0.07925_0.7437_0.1298.png
                gene_name: SNX14
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.079 
        ci_ks_bounds_left: 0.076 
       ci_ks_bounds_right: 0.083 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 92 percent done.
SNX15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.826467e-02	ci left: 5.021507e-01	ci right 5.218423e-01	k: 5120	n:10000
Cons ci ratio: 2.006502e-02	ci left: 7.843160e-01	ci right 8.003134e-01	k: 7924	n:10000
KS ci ratio: 1.406212e-01	ci left: 6.700893e-02	ci right 7.724202e-02	k: 720	n:10000
SNX15   10000 perm   2 sec   (6637 perm/sec)   p_kst 7.200000e-02   p_cons 7.924000e-01   p_joint 5.120000e-01

Joint ci ratio: 3.504810e-02	ci left: 3.779992e-01	ci right 3.915343e-01	k: 7695	n:20000
Cons ci ratio: 1.403471e-02	ci left: 7.902969e-01	ci right 8.015169e-01	k: 15919	n:20000
KS ci ratio: 9.969730e-02	ci left: 6.816195e-02	ci right 7.536315e-02	k: 1434	n:20000
SNX15   20000 perm   3 sec   (5859 perm/sec)   p_kst 7.170000e-02   p_cons 7.959500e-01   p_joint 3.847500e-01

Outputting figure to mutsig2_images.part000000000163/SNX15.2_1061_20000_0.0717_0.79595_0.38475.png
                gene_name: SNX15
               theta_stop: 0.100 
                    nperm: 20000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.075 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.39 

Current progress: 95 percent done.
SNX17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.483260e-02	ci left: 8.681543e-01	ci right 8.812266e-01	k: 8748	n:10000
KS ci ratio: 1.274153e-02	ci left: 8.985712e-01	ci right 9.101920e-01	k: 9045	n:10000
SNX17   10000 perm   2 sec   (6490 perm/sec)   p_kst 9.045000e-01   p_cons 8.748000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000163/SNX17.2_1473_10000_0.9045_0.8748_1.png
                gene_name: SNX17
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
SNX20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.165721e-01	ci left: 1.270967e-02	ci right 1.757875e-02	k: 150	n:10000
Cons ci ratio: 4.539792e-01	ci left: 5.726273e-03	ci right 9.170022e-03	k: 73	n:10000
KS ci ratio: 4.384994e-02	ci left: 4.343291e-01	ci right 4.539035e-01	k: 4441	n:10000
SNX20   10000 perm   1 sec   (6699 perm/sec)   p_kst 4.441000e-01   p_cons 7.300000e-03   p_joint 1.500000e-02

Joint ci ratio: 2.531120e-01	ci left: 1.034973e-02	ci right 1.339466e-02	k: 236	n:20000
Cons ci ratio: 3.232272e-01	ci left: 6.121310e-03	ci right 8.525270e-03	k: 145	n:20000
KS ci ratio: 3.117307e-02	ci left: 4.346020e-01	ci right 4.484150e-01	k: 8830	n:20000
SNX20   20000 perm   3 sec   (5923 perm/sec)   p_kst 4.415000e-01   p_cons 7.250000e-03   p_joint 1.180000e-02

Joint ci ratio: 1.717537e-01	ci left: 1.559936e-02	ci right 1.856189e-02	k: 511	n:30000
Cons ci ratio: 2.728432e-01	ci left: 5.901397e-03	ci right 7.796003e-03	k: 204	n:30000
KS ci ratio: 2.548099e-02	ci left: 4.353376e-01	ci right 4.466072e-01	k: 13229	n:30000
SNX20   30000 perm   5 sec   (5611 perm/sec)   p_kst 4.409667e-01   p_cons 6.800000e-03   p_joint 1.703333e-02

Joint ci ratio: 1.823171e-01	ci left: 1.038273e-02	ci right 1.248909e-02	k: 456	n:40000
Cons ci ratio: 2.381987e-01	ci left: 5.924020e-03	ci right 7.548834e-03	k: 268	n:40000
KS ci ratio: 2.203583e-02	ci left: 4.368004e-01	ci right 4.465580e-01	k: 17667	n:40000
SNX20   40000 perm   7 sec   (5410 perm/sec)   p_kst 4.416750e-01   p_cons 6.700000e-03   p_joint 1.140000e-02

Joint ci ratio: 1.201053e-01	ci left: 1.960578e-02	ci right 2.213028e-02	k: 1042	n:50000
Cons ci ratio: 1.682480e-01	ci left: 9.835842e-03	ci right 1.166163e-02	k: 536	n:50000
KS ci ratio: 1.970222e-02	ci left: 4.375006e-01	ci right 4.462262e-01	k: 22093	n:50000
SNX20   50000 perm   10 sec   (5252 perm/sec)   p_kst 4.418600e-01   p_cons 1.072000e-02   p_joint 2.084000e-02

Joint ci ratio: 1.021622e-01	ci left: 2.272510e-02	ci right 2.518791e-02	k: 1436	n:60000
Cons ci ratio: 1.543657e-01	ci left: 9.812005e-03	ci right 1.146917e-02	k: 637	n:60000
KS ci ratio: 1.802622e-02	ci left: 4.367720e-01	ci right 4.447337e-01	k: 26445	n:60000
SNX20   60000 perm   12 sec   (5118 perm/sec)   p_kst 4.407500e-01   p_cons 1.061667e-02   p_joint 2.393333e-02

Joint ci ratio: 9.448294e-02	ci left: 2.286488e-02	ci right 2.514624e-02	k: 1679	n:70000
Cons ci ratio: 1.428504e-01	ci left: 9.882112e-03	ci right 1.141600e-02	k: 744	n:70000
KS ci ratio: 1.668113e-02	ci left: 4.373030e-01	ci right 4.446733e-01	k: 30869	n:70000
SNX20   70000 perm   14 sec   (4994 perm/sec)   p_kst 4.409857e-01   p_cons 1.062857e-02   p_joint 2.398571e-02

Joint ci ratio: 9.264773e-02	ci left: 2.087250e-02	ci right 2.291238e-02	k: 1750	n:80000
Cons ci ratio: 1.327937e-01	ci left: 1.005903e-02	ci right 1.150178e-02	k: 861	n:80000
KS ci ratio: 1.561603e-02	ci left: 4.371557e-01	ci right 4.440486e-01	k: 35248	n:80000
SNX20   80000 perm   16 sec   (4881 perm/sec)   p_kst 4.406000e-01   p_cons 1.076250e-02   p_joint 2.187500e-02

Joint ci ratio: 9.095192e-02	ci left: 1.930168e-02	ci right 2.115165e-02	k: 1819	n:90000
Cons ci ratio: 1.250526e-01	ci left: 1.012421e-02	ci right 1.148538e-02	k: 971	n:90000
KS ci ratio: 1.474356e-02	ci left: 4.366646e-01	ci right 4.431615e-01	k: 39592	n:90000
SNX20   90000 perm   19 sec   (4776 perm/sec)   p_kst 4.399111e-01   p_cons 1.078889e-02   p_joint 2.021111e-02

Joint ci ratio: 9.474498e-02	ci left: 1.603200e-02	ci right 1.763620e-02	k: 1682	n:100000
Cons ci ratio: 1.193637e-01	ci left: 1.003272e-02	ci right 1.131590e-02	k: 1066	n:100000
KS ci ratio: 1.396803e-02	ci left: 4.374997e-01	ci right 4.436637e-01	k: 44058	n:100000
SNX20   100000 perm   21 sec   (4673 perm/sec)   p_kst 4.405800e-01   p_cons 1.066000e-02   p_joint 1.682000e-02

Joint ci ratio: 8.999773e-02	ci left: 1.619094e-02	ci right 1.772559e-02	k: 1864	n:110000
Cons ci ratio: 1.134528e-01	ci left: 1.012688e-02	ci right 1.135366e-02	k: 1180	n:110000
KS ci ratio: 1.331526e-02	ci left: 4.377450e-01	ci right 4.436218e-01	k: 48475	n:110000
SNX20   110000 perm   24 sec   (4580 perm/sec)   p_kst 4.406818e-01   p_cons 1.072727e-02   p_joint 1.694545e-02

Joint ci ratio: 7.810684e-02	ci left: 1.975473e-02	ci right 2.136855e-02	k: 2466	n:120000
Cons ci ratio: 1.080883e-01	ci left: 1.025531e-02	ci right 1.143517e-02	k: 1300	n:120000
KS ci ratio: 1.275700e-02	ci left: 4.375385e-01	ci right 4.431643e-01	k: 52842	n:120000
SNX20   120000 perm   27 sec   (4493 perm/sec)   p_kst 4.403500e-01   p_cons 1.083333e-02   p_joint 2.055000e-02

Joint ci ratio: 7.812148e-02	ci left: 1.825721e-02	ci right 1.974897e-02	k: 2469	n:130000
Cons ci ratio: 1.038634e-01	ci left: 1.027520e-02	ci right 1.140832e-02	k: 1408	n:130000
KS ci ratio: 1.226371e-02	ci left: 4.373607e-01	ci right 4.427651e-01	k: 57208	n:130000
SNX20   130000 perm   29 sec   (4410 perm/sec)   p_kst 4.400615e-01   p_cons 1.083077e-02   p_joint 1.899231e-02

Joint ci ratio: 7.271592e-02	ci left: 1.959572e-02	ci right 2.108138e-02	k: 2846	n:140000
Cons ci ratio: 9.993177e-02	ci left: 1.032785e-02	ci right 1.142112e-02	k: 1521	n:140000
KS ci ratio: 1.181961e-02	ci left: 4.373761e-01	ci right 4.425835e-01	k: 61597	n:140000
SNX20   140000 perm   32 sec   (4328 perm/sec)   p_kst 4.399786e-01   p_cons 1.086429e-02   p_joint 2.032857e-02

Outputting figure to mutsig2_images.part000000000163/SNX20.2_1106_140000_0.43998_0.010864_0.020329.png
                gene_name: SNX20
               theta_stop: 0.100 
                    nperm: 140000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.011 
      ci_cons_bounds_left: 0.010 
     ci_cons_bounds_right: 0.011 
                  p_joint: 0.020 
     ci_joint_bounds_left: 0.020 
    ci_joint_bounds_right: 0.021 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000163
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 163 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1644>
Subject: Job 8004564: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1644>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000164> was used as the working directory.
Started at Sun Nov 11 15:18:43 2012
Results reported at Sun Nov 11 15:26:36 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000164.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000164.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 164  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000164.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    505.73 sec.
    Max Memory :      4679 MB
    Max Swap   :      7125 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
164
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 164
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 164: processing genes 14748 - 14837
Calculating significance of each gene.
Using projection method.
14748	SNX21	6.323915e-01
14749	SNX22	1
14750	SNX24	7.215249e-02
14751	SNX25	8.951006e-01
14752	SNX27	1
14753	SNX29	7.851003e-01
14754	SNX3	1
14755	SNX30	6.486192e-01
14756	SNX31	1
14757	SNX32	6.602427e-01
14758	SNX33	6.559232e-01
14759	SNX4	7.635462e-01
14760	SNX5	6.803368e-01
14761	SNX6	1
14762	SNX7	2.374838e-01
14763	SNX8	3.095686e-01
14764	SNX9	1
14765	SOAT1	8.875409e-01
14766	SOAT2	4.826597e-01
14767	SOBP	1
14768	SOCS1	1
14769	SOCS2	7.390375e-02
14770	SOCS3	4.965621e-01
14771	SOCS4	8.453342e-01
14772	SOCS5	6.640662e-01
14773	SOCS6	4.882036e-01
14774	SOCS7	1
14775	SOD1	1
14776	SOD2	4.864294e-01
14777	SOD3	1
14778	SOHLH1	4.742485e-01
14779	SOHLH2	7.405844e-01
14780	SOLH	1.720285e-01
14781	SON	8.622059e-01
14782	SORBS1	1
14783	SORBS2	1
14784	SORBS3	9.358829e-01
14785	SORCS1	1.034235e-03
14786	SORCS2	8.421932e-01
14787	SORCS3	1.448498e-02
14788	SORD	7.879574e-01
14789	SORL1	8.862881e-01
14790	SORT1	8.690499e-01
14791	SOS1	2.459371e-02
14792	SOS2	3.111452e-01
14793	SOST	4.394167e-01
14794	SOSTDC1	1
14795	SOX1	6.912714e-02
14796	SOX10	6.883291e-01
14797	SOX11	1.530079e-01
14798	SOX12	1
14799	SOX13	1
14800	SOX14	4.413754e-02
14801	SOX15	1
14802	SOX17	1
14803	SOX18	4.397566e-01
14804	SOX2	5.636758e-01
14805	SOX21	1
14806	SOX3	5.936466e-02
14807	SOX30	5.816037e-01
14808	SOX4	6.073726e-01
14809	SOX5	7.677935e-01
14810	SOX6	9.309274e-01
14811	SOX7	6.145366e-01
14812	SOX8	4.658177e-02
14813	SOX9	8.004226e-01
14814	SP1	7.819568e-01
14815	SP100	7.577471e-01
14816	SP110	9.258552e-01
14817	SP140	3.895183e-01
14818	SP140L	7.358660e-01
14819	SP2	6.544214e-01
14820	SP3	9.212032e-01
14821	SP4	5.253384e-03
14822	SP5	6.122283e-01
14823	SP6	1.872399e-01
14824	SP7	5.948990e-01
14825	SP8	1
14826	SPA17	1
14827	SPACA1	1
14828	SPACA3	8.458529e-02
14829	SPACA4	1
14830	SPAG1	6.281091e-01
14831	SPAG11A	2.949503e-03
14832	SPAG11B	1.126775e-01
14833	SPAG16	7.292973e-01
14834	SPAG17	6.176123e-01
14835	SPAG4	2.485853e-01
14836	SPAG5	9.160197e-01
14837	SPAG6	9.915591e-02
Done

Running MutSig 2:
Scatter job 164: processing genes 14748 - 14837
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SPAG17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.690887e-01	ci left: 4.667345e-02	ci right 5.539046e-02	k: 509	n:10000
Cons ci ratio: 1.930388e-01	ci left: 3.576701e-02	ci right 4.350411e-02	k: 395	n:10000
KS ci ratio: 1.115553e-01	ci left: 1.037366e-01	ci right 1.160916e-01	k: 1098	n:10000
SPAG17   10000 perm   3 sec   (3522 perm/sec)   p_kst 1.098000e-01   p_cons 3.950000e-02   p_joint 5.090000e-02

Joint ci ratio: 1.233734e-01	ci left: 4.507829e-02	ci right 5.105398e-02	k: 960	n:20000
Cons ci ratio: 1.380522e-01	ci left: 3.606913e-02	ci right 4.146602e-02	k: 774	n:20000
KS ci ratio: 7.916654e-02	ci left: 1.048604e-01	ci right 1.135536e-01	k: 2183	n:20000
SPAG17   20000 perm   8 sec   (2463 perm/sec)   p_kst 1.091500e-01   p_cons 3.870000e-02   p_joint 4.800000e-02

Joint ci ratio: 1.101574e-01	ci left: 3.826480e-02	ci right 4.275808e-02	k: 1214	n:30000
Cons ci ratio: 1.112110e-01	ci left: 3.755099e-02	ci right 4.200537e-02	k: 1192	n:30000
KS ci ratio: 6.666765e-02	ci left: 9.987788e-02	ci right 1.067992e-01	k: 3099	n:30000
SPAG17   30000 perm   11 sec   (2630 perm/sec)   p_kst 1.033000e-01   p_cons 3.973333e-02   p_joint 4.046667e-02

Joint ci ratio: 1.147438e-01	ci left: 2.672103e-02	ci right 2.999792e-02	k: 1133	n:40000
Cons ci ratio: 9.716320e-02	ci left: 3.719708e-02	ci right 4.102020e-02	k: 1563	n:40000
KS ci ratio: 5.783234e-02	ci left: 1.000377e-01	ci right 1.060201e-01	k: 4120	n:40000
SPAG17   40000 perm   15 sec   (2700 perm/sec)   p_kst 1.030000e-01   p_cons 3.907500e-02   p_joint 2.832500e-02

Joint ci ratio: 9.641835e-02	ci left: 3.045501e-02	ci right 3.355964e-02	k: 1599	n:50000
Cons ci ratio: 8.642368e-02	ci left: 3.780948e-02	ci right 4.124425e-02	k: 1975	n:50000
KS ci ratio: 5.177876e-02	ci left: 1.001709e-01	ci right 1.055153e-01	k: 5141	n:50000
SPAG17   50000 perm   18 sec   (2721 perm/sec)   p_kst 1.028200e-01   p_cons 3.950000e-02   p_joint 3.198000e-02

Outputting figure to mutsig2_images.part000000000164/SPAG17.21_6864_50000_0.10282_0.0395_0.03198.png
                gene_name: SPAG17
               theta_stop: 0.096 
                    nperm: 50000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.040 
      ci_cons_bounds_left: 0.038 
     ci_cons_bounds_right: 0.041 
                  p_joint: 0.032 
     ci_joint_bounds_left: 0.030 
    ci_joint_bounds_right: 0.034 

Current progress: 2 percent done.
SORCS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.467229e-02	ci left: 5.512068e-01	ci right 5.707577e-01	k: 5610	n:10000
Cons ci ratio: 1.831127e-02	ci left: 8.132417e-01	ci right 8.283709e-01	k: 8209	n:10000
KS ci ratio: 5.371559e-02	ci left: 3.380633e-01	ci right 3.568256e-01	k: 3474	n:10000
SORCS1   10000 perm   2 sec   (4138 perm/sec)   p_kst 3.474000e-01   p_cons 8.209000e-01   p_joint 5.610000e-01

Outputting figure to mutsig2_images.part000000000164/SORCS1.20_3845_10000_0.3474_0.8209_0.561.png
                gene_name: SORCS1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 4 percent done.
SORCS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.673692e-02	ci left: 1.621934e-01	ci right 1.769996e-01	k: 1695	n:10000
Cons ci ratio: 7.314920e-02	ci left: 2.148731e-01	ci right 2.312886e-01	k: 2230	n:10000
KS ci ratio: 9.360549e-02	ci left: 1.421718e-01	ci right 1.562332e-01	k: 1491	n:10000
SORCS3   10000 perm   2 sec   (4790 perm/sec)   p_kst 1.491000e-01   p_cons 2.230000e-01   p_joint 1.695000e-01

Outputting figure to mutsig2_images.part000000000164/SORCS3.17_3777_10000_0.1491_0.223_0.1695.png
                gene_name: SORCS3
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.18 

Current progress: 6 percent done.
SOS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.093398e-02	ci left: 7.698255e-01	ci right 7.862122e-01	k: 7781	n:10000
Cons ci ratio: 3.956422e-02	ci left: 4.854532e-01	ci right 5.051496e-01	k: 4953	n:10000
KS ci ratio: 3.002544e-02	ci left: 6.206514e-01	ci right 6.396727e-01	k: 6302	n:10000
SOS1   10000 perm   2 sec   (4413 perm/sec)   p_kst 6.302000e-01   p_cons 4.953000e-01   p_joint 7.781000e-01

Outputting figure to mutsig2_images.part000000000164/SOS1.11_4094_10000_0.6302_0.4953_0.7781.png
                gene_name: SOS1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 9 percent done.
SON
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.136983e-02	ci left: 7.625349e-01	ci right 7.791070e-01	k: 7709	n:10000
Cons ci ratio: 2.673487e-02	ci left: 6.732741e-01	ci right 6.916195e-01	k: 6825	n:10000
KS ci ratio: 4.362865e-02	ci left: 4.368230e-01	ci right 4.564081e-01	k: 4466	n:10000
SON   10000 perm   2 sec   (4070 perm/sec)   p_kst 4.466000e-01   p_cons 6.825000e-01   p_joint 7.709000e-01

Outputting figure to mutsig2_images.part000000000164/SON.8_7588_10000_0.4466_0.6825_0.7709.png
                gene_name: SON
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 11 percent done.
SORL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.293129e-02	ci left: 5.764730e-01	ci right 5.958768e-01	k: 5862	n:10000
Cons ci ratio: 3.920196e-02	ci left: 4.900514e-01	ci right 5.097486e-01	k: 4999	n:10000
KS ci ratio: 6.726746e-02	ci left: 2.448978e-01	ci right 2.620461e-01	k: 2534	n:10000
SORL1   10000 perm   2 sec   (4225 perm/sec)   p_kst 2.534000e-01   p_cons 4.999000e-01   p_joint 5.862000e-01

Outputting figure to mutsig2_images.part000000000164/SORL1.8_6837_10000_0.2534_0.4999_0.5862.png
                gene_name: SORL1
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 13 percent done.
SP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.478520e-02	ci left: 8.688696e-01	ci right 8.819108e-01	k: 8755	n:10000
Cons ci ratio: 4.137882e-02	ci left: 4.630737e-01	ci right 4.827421e-01	k: 4729	n:10000
KS ci ratio: 1.948433e-02	ci left: 7.939508e-01	ci right 8.096730e-01	k: 8019	n:10000
SP4   10000 perm   2 sec   (5011 perm/sec)   p_kst 8.019000e-01   p_cons 4.729000e-01   p_joint 8.755000e-01

Outputting figure to mutsig2_images.part000000000164/SP4.8_2379_10000_0.8019_0.4729_0.8755.png
                gene_name: SP4
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 15 percent done.
SOS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.580505e-02	ci left: 3.210824e-01	ci right 3.396165e-01	k: 3303	n:10000
Cons ci ratio: 3.547462e-02	ci left: 5.398854e-01	ci right 5.594856e-01	k: 5497	n:10000
KS ci ratio: 6.724969e-02	ci left: 2.449966e-01	ci right 2.621471e-01	k: 2535	n:10000
SOS2   10000 perm   2 sec   (4684 perm/sec)   p_kst 2.535000e-01   p_cons 5.497000e-01   p_joint 3.303000e-01

Outputting figure to mutsig2_images.part000000000164/SOS2.7_4091_10000_0.2535_0.5497_0.3303.png
                gene_name: SOS2
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 17 percent done.
SPAG16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.256318e-02	ci left: 3.479005e-01	ci right 3.667827e-01	k: 3573	n:10000
Cons ci ratio: 4.061489e-02	ci left: 4.723628e-01	ci right 4.920476e-01	k: 4822	n:10000
KS ci ratio: 6.387201e-02	ci left: 2.647803e-01	ci right 2.823518e-01	k: 2735	n:10000
SPAG16   10000 perm   2 sec   (5302 perm/sec)   p_kst 2.735000e-01   p_cons 4.822000e-01   p_joint 3.573000e-01

Outputting figure to mutsig2_images.part000000000164/SPAG16.7_1976_10000_0.2735_0.4822_0.3573.png
                gene_name: SPAG16
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 19 percent done.
SOX14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.197400e-02	ci left: 7.524148e-01	ci right 7.692330e-01	k: 7609	n:10000
Cons ci ratio: 5.492152e-02	ci left: 3.281313e-01	ci right 3.467635e-01	k: 3374	n:10000
KS ci ratio: 9.390706e-03	ci left: 9.411809e-01	ci right 9.501572e-01	k: 9458	n:10000
SOX14   10000 perm   2 sec   (6578 perm/sec)   p_kst 9.458000e-01   p_cons 3.374000e-01   p_joint 7.609000e-01

Outputting figure to mutsig2_images.part000000000164/SOX14.6_727_10000_0.9458_0.3374_0.7609.png
                gene_name: SOX14
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 21 percent done.
SOLH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.574771e-02	ci left: 5.360794e-01	ci right 5.556939e-01	k: 5459	n:10000
Cons ci ratio: 4.286896e-02	ci left: 4.455036e-01	ci right 4.651224e-01	k: 4553	n:10000
KS ci ratio: 3.847961e-02	ci left: 4.993504e-01	ci right 5.190443e-01	k: 5092	n:10000
SOLH   10000 perm   2 sec   (5348 perm/sec)   p_kst 5.092000e-01   p_cons 4.553000e-01   p_joint 5.459000e-01

Outputting figure to mutsig2_images.part000000000164/SOLH.5_3305_10000_0.5092_0.4553_0.5459.png
                gene_name: SOLH
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 23 percent done.
SORBS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.575520e-02	ci left: 2.031366e-01	ci right 2.192320e-01	k: 2111	n:10000
Cons ci ratio: 4.116368e-02	ci left: 4.656703e-01	ci right 4.853440e-01	k: 4755	n:10000
KS ci ratio: 1.060498e-01	ci left: 1.137899e-01	ci right 1.266323e-01	k: 1201	n:10000
SORBS1   10000 perm   2 sec   (4776 perm/sec)   p_kst 1.201000e-01   p_cons 4.755000e-01   p_joint 2.111000e-01

Joint ci ratio: 5.179208e-02	ci left: 2.168504e-01	ci right 2.284303e-01	k: 4452	n:20000
Cons ci ratio: 2.854934e-02	ci left: 4.782511e-01	ci right 4.921532e-01	k: 9704	n:20000
KS ci ratio: 7.704429e-02	ci left: 1.101675e-01	ci right 1.190449e-01	k: 2291	n:20000
SORBS1   20000 perm   5 sec   (4341 perm/sec)   p_kst 1.145500e-01   p_cons 4.852000e-01   p_joint 2.226000e-01

Outputting figure to mutsig2_images.part000000000164/SORBS1.5_4200_20000_0.11455_0.4852_0.2226.png
                gene_name: SORBS1
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 26 percent done.
SOX5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.292744e-01	ci left: 7.873206e-02	ci right 8.971158e-02	k: 841	n:10000
Cons ci ratio: 2.468251e-01	ci left: 2.155910e-02	ci right 2.772208e-02	k: 245	n:10000
KS ci ratio: 6.084766e-02	ci left: 2.842889e-01	ci right 3.022316e-01	k: 2932	n:10000
SOX5   10000 perm   2 sec   (5639 perm/sec)   p_kst 2.932000e-01   p_cons 2.450000e-02   p_joint 8.410000e-02

Joint ci ratio: 9.240486e-02	ci left: 7.872292e-02	ci right 8.639896e-02	k: 1650	n:20000
Cons ci ratio: 1.808539e-01	ci left: 2.087148e-02	ci right 2.506879e-02	k: 458	n:20000
KS ci ratio: 4.318217e-02	ci left: 2.854558e-01	ci right 2.981048e-01	k: 5835	n:20000
SOX5   20000 perm   4 sec   (5048 perm/sec)   p_kst 2.917500e-01   p_cons 2.290000e-02   p_joint 8.250000e-02

Joint ci ratio: 8.328361e-02	ci left: 6.589562e-02	ci right 7.165490e-02	k: 2062	n:30000
Cons ci ratio: 1.507789e-01	ci left: 2.036990e-02	ci right 2.372355e-02	k: 660	n:30000
KS ci ratio: 3.500672e-02	ci left: 2.895776e-01	ci right 2.999289e-01	k: 8842	n:30000
SOX5   30000 perm   6 sec   (4790 perm/sec)   p_kst 2.947333e-01   p_cons 2.200000e-02   p_joint 6.873333e-02

Joint ci ratio: 7.295052e-02	ci left: 6.486372e-02	ci right 6.979932e-02	k: 2692	n:40000
Cons ci ratio: 1.305284e-01	ci left: 2.060901e-02	ci right 2.351095e-02	k: 881	n:40000
KS ci ratio: 3.049573e-02	ci left: 2.878456e-01	ci right 2.967846e-01	k: 11692	n:40000
SOX5   40000 perm   9 sec   (4607 perm/sec)   p_kst 2.923000e-01   p_cons 2.202500e-02   p_joint 6.730000e-02

Joint ci ratio: 6.513763e-02	ci left: 6.533578e-02	ci right 6.975459e-02	k: 3376	n:50000
Cons ci ratio: 1.166133e-01	ci left: 2.080981e-02	ci right 2.340609e-02	k: 1104	n:50000
KS ci ratio: 2.726996e-02	ci left: 2.884151e-01	ci right 2.964090e-01	k: 14620	n:50000
SOX5   50000 perm   11 sec   (4512 perm/sec)   p_kst 2.924000e-01   p_cons 2.208000e-02   p_joint 6.752000e-02

Joint ci ratio: 6.067886e-02	ci left: 6.305659e-02	ci right 6.701894e-02	k: 3901	n:60000
Cons ci ratio: 1.071576e-01	ci left: 2.064638e-02	ci right 2.300019e-02	k: 1308	n:60000
KS ci ratio: 2.487413e-02	ci left: 2.890943e-01	ci right 2.963925e-01	k: 17564	n:60000
SOX5   60000 perm   14 sec   (4420 perm/sec)   p_kst 2.927333e-01   p_cons 2.180000e-02   p_joint 6.501667e-02

Joint ci ratio: 5.566509e-02	ci left: 6.431261e-02	ci right 6.800916e-02	k: 4630	n:70000
Cons ci ratio: 9.938075e-02	ci left: 2.066124e-02	ci right 2.283580e-02	k: 1521	n:70000
KS ci ratio: 2.306756e-02	ci left: 2.886760e-01	ci right 2.954270e-01	k: 20443	n:70000
SOX5   70000 perm   16 sec   (4344 perm/sec)   p_kst 2.920429e-01   p_cons 2.172857e-02   p_joint 6.614286e-02

Outputting figure to mutsig2_images.part000000000164/SOX5.5_2362_70000_0.29204_0.021729_0.066143.png
                gene_name: SOX5
               theta_stop: 0.099 
                    nperm: 70000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.022 
      ci_cons_bounds_left: 0.021 
     ci_cons_bounds_right: 0.023 
                  p_joint: 0.066 
     ci_joint_bounds_left: 0.064 
    ci_joint_bounds_right: 0.068 

Current progress: 28 percent done.
SORBS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.743772e-01	ci left: 4.389243e-02	ci right 5.237330e-02	k: 480	n:10000
Cons ci ratio: 2.432992e-01	ci left: 2.221701e-02	ci right 2.846368e-02	k: 252	n:10000
KS ci ratio: 7.738372e-02	ci left: 1.962376e-01	ci right 2.121351e-01	k: 2041	n:10000
SORBS2   10000 perm   2 sec   (4904 perm/sec)   p_kst 2.041000e-01   p_cons 2.520000e-02   p_joint 4.800000e-02

Joint ci ratio: 1.077194e-01	ci left: 5.874541e-02	ci right 6.548259e-02	k: 1241	n:20000
Cons ci ratio: 1.696499e-01	ci left: 2.379073e-02	ci right 2.824852e-02	k: 519	n:20000
KS ci ratio: 5.427699e-02	ci left: 2.012049e-01	ci right 2.124805e-01	k: 4136	n:20000
SORBS2   20000 perm   5 sec   (4334 perm/sec)   p_kst 2.068000e-01   p_cons 2.595000e-02   p_joint 6.205000e-02

Joint ci ratio: 8.866577e-02	ci left: 5.844827e-02	ci right 6.390376e-02	k: 1834	n:30000
Cons ci ratio: 1.416262e-01	ci left: 2.313404e-02	ci right 2.669212e-02	k: 746	n:30000
KS ci ratio: 4.390933e-02	ci left: 2.052703e-01	ci right 2.145193e-01	k: 6296	n:30000
SORBS2   30000 perm   7 sec   (4241 perm/sec)   p_kst 2.098667e-01   p_cons 2.486667e-02   p_joint 6.113333e-02

Joint ci ratio: 7.999989e-02	ci left: 5.435524e-02	ci right 5.890939e-02	k: 2264	n:40000
Cons ci ratio: 1.232245e-01	ci left: 2.315256e-02	ci right 2.621697e-02	k: 986	n:40000
KS ci ratio: 3.815901e-02	ci left: 2.047511e-01	ci right 2.127412e-01	k: 8349	n:40000
SORBS2   40000 perm   10 sec   (4157 perm/sec)   p_kst 2.087250e-01   p_cons 2.465000e-02   p_joint 5.660000e-02

Joint ci ratio: 6.519976e-02	ci left: 6.521760e-02	ci right 6.963278e-02	k: 3370	n:50000
Cons ci ratio: 1.147681e-01	ci left: 2.148998e-02	ci right 2.412583e-02	k: 1139	n:50000
KS ci ratio: 3.414394e-02	ci left: 2.050456e-01	ci right 2.121882e-01	k: 10430	n:50000
SORBS2   50000 perm   12 sec   (4101 perm/sec)   p_kst 2.086000e-01   p_cons 2.278000e-02   p_joint 6.740000e-02

Joint ci ratio: 7.086998e-02	ci left: 4.679465e-02	ci right 5.024919e-02	k: 2910	n:60000
Cons ci ratio: 1.008751e-01	ci left: 2.331022e-02	ci right 2.580273e-02	k: 1472	n:60000
KS ci ratio: 3.111595e-02	ci left: 2.059181e-01	ci right 2.124434e-01	k: 12550	n:60000
SORBS2   60000 perm   15 sec   (4025 perm/sec)   p_kst 2.091667e-01   p_cons 2.453333e-02   p_joint 4.850000e-02

Joint ci ratio: 7.003040e-02	ci left: 4.134051e-02	ci right 4.435468e-02	k: 2998	n:70000
Cons ci ratio: 9.337833e-02	ci left: 2.340924e-02	ci right 2.571611e-02	k: 1718	n:70000
KS ci ratio: 2.886867e-02	ci left: 2.054672e-01	ci right 2.114999e-01	k: 14593	n:70000
SORBS2   70000 perm   18 sec   (3965 perm/sec)   p_kst 2.084714e-01   p_cons 2.454286e-02   p_joint 4.282857e-02

Outputting figure to mutsig2_images.part000000000164/SORBS2.4_4491_70000_0.20847_0.024543_0.042829.png
                gene_name: SORBS2
               theta_stop: 0.093 
                    nperm: 70000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.025 
      ci_cons_bounds_left: 0.023 
     ci_cons_bounds_right: 0.026 
                  p_joint: 0.043 
     ci_joint_bounds_left: 0.041 
    ci_joint_bounds_right: 0.044 

Current progress: 30 percent done.
SOX6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.488595e-02	ci left: 4.228604e-01	ci right 4.423788e-01	k: 4326	n:10000
Cons ci ratio: 1.673668e-01	ci left: 4.763334e-02	ci right 5.642994e-02	k: 519	n:10000
KS ci ratio: 3.556068e-02	ci left: 5.386835e-01	ci right 5.582883e-01	k: 5485	n:10000
SOX6   10000 perm   2 sec   (5457 perm/sec)   p_kst 5.485000e-01   p_cons 5.190000e-02   p_joint 4.326000e-01

Joint ci ratio: 3.306991e-02	ci left: 4.057653e-01	ci right 4.194601e-01	k: 8252	n:20000
Cons ci ratio: 1.181691e-01	ci left: 4.906042e-02	ci right 5.527060e-02	k: 1042	n:20000
KS ci ratio: 2.506825e-02	ci left: 5.431234e-01	ci right 5.569620e-01	k: 11001	n:20000
SOX6   20000 perm   4 sec   (4910 perm/sec)   p_kst 5.500500e-01   p_cons 5.210000e-02   p_joint 4.126000e-01

Joint ci ratio: 2.357863e-02	ci left: 4.738324e-01	ci right 4.851716e-01	k: 14385	n:30000
Cons ci ratio: 9.617773e-02	ci left: 4.993781e-02	ci right 5.501597e-02	k: 1573	n:30000
KS ci ratio: 2.049961e-02	ci left: 5.436484e-01	ci right 5.549420e-01	k: 16479	n:30000
SOX6   30000 perm   6 sec   (4682 perm/sec)   p_kst 5.493000e-01   p_cons 5.243333e-02   p_joint 4.795000e-01

Outputting figure to mutsig2_images.part000000000164/SOX6.4_2641_30000_0.5493_0.052433_0.4795.png
                gene_name: SOX6
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.052 
      ci_cons_bounds_left: 0.050 
     ci_cons_bounds_right: 0.055 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 32 percent done.
SP140
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.045457e-02	ci left: 7.778289e-01	ci right 7.940042e-01	k: 7860	n:10000
KS ci ratio: 1.698263e-02	ci left: 8.347018e-01	ci right 8.490984e-01	k: 8420	n:10000
SP140   10000 perm   2 sec   (5334 perm/sec)   p_kst 8.420000e-01   p_cons 7.860000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000164/SP140.4_2829_10000_0.842_0.786_1.png
                gene_name: SP140
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 34 percent done.
SPAG4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.977048e-02	ci left: 4.828546e-01	ci right 5.025497e-01	k: 4927	n:10000
Cons ci ratio: 4.629413e-02	ci left: 4.078097e-01	ci right 4.272384e-01	k: 4175	n:10000
KS ci ratio: 4.037172e-02	ci left: 4.753600e-01	ci right 4.950486e-01	k: 4852	n:10000
SPAG4   10000 perm   2 sec   (5908 perm/sec)   p_kst 4.852000e-01   p_cons 4.175000e-01   p_joint 4.927000e-01

Outputting figure to mutsig2_images.part000000000164/SPAG4.4_1362_10000_0.4852_0.4175_0.4927.png
                gene_name: SPAG4
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 36 percent done.
SPAG6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.592830e-02	ci left: 5.335757e-01	ci right 5.531990e-01	k: 5434	n:10000
Cons ci ratio: 4.987073e-02	ci left: 3.722635e-01	ci right 3.914054e-01	k: 3818	n:10000
KS ci ratio: 5.413272e-02	ci left: 3.345866e-01	ci right 3.533044e-01	k: 3439	n:10000
SPAG6   10000 perm   2 sec   (5795 perm/sec)   p_kst 3.439000e-01   p_cons 3.818000e-01   p_joint 5.434000e-01

Outputting figure to mutsig2_images.part000000000164/SPAG6.4_1574_10000_0.3439_0.3818_0.5434.png
                gene_name: SPAG6
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 38 percent done.
SNX32
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.888187e-02	ci left: 4.941505e-01	ci right 5.138471e-01	k: 5040	n:10000
Cons ci ratio: 8.133230e-02	ci left: 1.807775e-01	ci right 1.962044e-01	k: 1884	n:10000
KS ci ratio: 2.211284e-02	ci left: 7.500881e-01	ci right 7.669611e-01	k: 7586	n:10000
SNX32   10000 perm   2 sec   (6216 perm/sec)   p_kst 7.586000e-01   p_cons 1.884000e-01   p_joint 5.040000e-01

Outputting figure to mutsig2_images.part000000000164/SNX32.3_1264_10000_0.7586_0.1884_0.504.png
                gene_name: SNX32
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 40 percent done.
SNX7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.208602e-02	ci left: 3.520751e-01	ci right 3.710056e-01	k: 3615	n:10000
Cons ci ratio: 3.172396e-02	ci left: 5.945361e-01	ci right 6.138031e-01	k: 6042	n:10000
KS ci ratio: 8.049148e-02	ci left: 1.839270e-01	ci right 1.994530e-01	k: 1916	n:10000
SNX7   10000 perm   2 sec   (6103 perm/sec)   p_kst 1.916000e-01   p_cons 6.042000e-01   p_joint 3.615000e-01

Outputting figure to mutsig2_images.part000000000164/SNX7.3_1392_10000_0.1916_0.6042_0.3615.png
                gene_name: SNX7
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 43 percent done.
SNX8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.008997e-02	ci left: 4.788572e-01	ci right 4.985494e-01	k: 4887	n:10000
Cons ci ratio: 7.776672e-02	ci left: 1.946611e-01	ci right 2.105125e-01	k: 2025	n:10000
KS ci ratio: 6.550165e-02	ci left: 2.549845e-01	ci right 2.723533e-01	k: 2636	n:10000
SNX8   10000 perm   2 sec   (6337 perm/sec)   p_kst 2.636000e-01   p_cons 2.025000e-01   p_joint 4.887000e-01

Outputting figure to mutsig2_images.part000000000164/SNX8.3_1442_10000_0.2636_0.2025_0.4887.png
                gene_name: SNX8
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 45 percent done.
SOCS5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.630365e-02	ci left: 4.077101e-01	ci right 4.271381e-01	k: 4174	n:10000
Cons ci ratio: 2.996107e-02	ci left: 6.216565e-01	ci right 6.406671e-01	k: 6312	n:10000
KS ci ratio: 5.356197e-02	ci left: 3.393548e-01	ci right 3.581334e-01	k: 3487	n:10000
SOCS5   10000 perm   2 sec   (6644 perm/sec)   p_kst 3.487000e-01   p_cons 6.312000e-01   p_joint 4.174000e-01

Outputting figure to mutsig2_images.part000000000164/SOCS5.3_1615_10000_0.3487_0.6312_0.4174.png
                gene_name: SOCS5
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 47 percent done.
SORT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.999969e-02	ci left: 6.210534e-01	ci right 6.400704e-01	k: 6306	n:10000
Cons ci ratio: 6.625207e-02	ci left: 2.506326e-01	ci right 2.679078e-01	k: 2592	n:10000
KS ci ratio: 5.392946e-02	ci left: 3.362752e-01	ci right 3.550148e-01	k: 3456	n:10000
SORT1   10000 perm   2 sec   (5841 perm/sec)   p_kst 3.456000e-01   p_cons 2.592000e-01   p_joint 6.306000e-01

Outputting figure to mutsig2_images.part000000000164/SORT1.3_2576_10000_0.3456_0.2592_0.6306.png
                gene_name: SORT1
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 49 percent done.
SOX30
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.812099e-02	ci left: 3.891836e-01	ci right 4.084753e-01	k: 3988	n:10000
Cons ci ratio: 7.391724e-02	ci left: 2.113215e-01	ci right 2.276422e-01	k: 2194	n:10000
KS ci ratio: 6.737426e-02	ci left: 2.443046e-01	ci right 2.614396e-01	k: 2528	n:10000
SOX30   10000 perm   2 sec   (5858 perm/sec)   p_kst 2.528000e-01   p_cons 2.194000e-01   p_joint 3.988000e-01

Outputting figure to mutsig2_images.part000000000164/SOX30.3_2282_10000_0.2528_0.2194_0.3988.png
                gene_name: SOX30
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 51 percent done.
SOX8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.376126e-02	ci left: 4.353266e-01	ci right 4.549054e-01	k: 4451	n:10000
Cons ci ratio: 2.482064e-02	ci left: 7.048299e-01	ci right 7.226454e-01	k: 7138	n:10000
KS ci ratio: 5.871592e-02	ci left: 2.991568e-01	ci right 3.173550e-01	k: 3082	n:10000
SOX8   10000 perm   2 sec   (6398 perm/sec)   p_kst 3.082000e-01   p_cons 7.138000e-01   p_joint 4.451000e-01

Outputting figure to mutsig2_images.part000000000164/SOX8.3_1353_10000_0.3082_0.7138_0.4451.png
                gene_name: SOX8
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.45 

Current progress: 53 percent done.
SP100
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.071561e-02	ci left: 3.644048e-01	ci right 3.834687e-01	k: 3739	n:10000
Cons ci ratio: 1.572531e-01	ci left: 5.388306e-02	ci right 6.317620e-02	k: 584	n:10000
KS ci ratio: 3.045847e-02	ci left: 6.139190e-01	ci right 6.330091e-01	k: 6235	n:10000
SP100   10000 perm   2 sec   (5396 perm/sec)   p_kst 6.235000e-01   p_cons 5.840000e-02   p_joint 3.739000e-01

Joint ci ratio: 5.822618e-02	ci left: 1.793431e-01	ci right 1.901487e-01	k: 3694	n:20000
Cons ci ratio: 1.160707e-01	ci left: 5.081038e-02	ci right 5.712009e-02	k: 1078	n:20000
KS ci ratio: 2.178918e-02	ci left: 6.112746e-01	ci right 6.247910e-01	k: 12361	n:20000
SP100   20000 perm   4 sec   (4874 perm/sec)   p_kst 6.180500e-01   p_cons 5.390000e-02   p_joint 1.847000e-01

Joint ci ratio: 5.350449e-02	ci left: 1.476908e-01	ci right 1.558434e-01	k: 4552	n:30000
Cons ci ratio: 9.506734e-02	ci left: 5.107803e-02	ci right 5.620885e-02	k: 1608	n:30000
KS ci ratio: 1.780930e-02	ci left: 6.120395e-01	ci right 6.230710e-01	k: 18527	n:30000
SP100   30000 perm   6 sec   (4673 perm/sec)   p_kst 6.175667e-01   p_cons 5.360000e-02   p_joint 1.517333e-01

Outputting figure to mutsig2_images.part000000000164/SP100.3_3324_30000_0.61757_0.0536_0.15173.png
                gene_name: SP100
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.054 
      ci_cons_bounds_left: 0.051 
     ci_cons_bounds_right: 0.056 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 55 percent done.
SP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.771079e-02	ci left: 8.230004e-01	ci right 8.378066e-01	k: 8305	n:10000
Cons ci ratio: 5.863342e-02	ci left: 2.997517e-01	ci right 3.179597e-01	k: 3088	n:10000
KS ci ratio: 3.317620e-02	ci left: 5.728619e-01	ci right 5.922899e-01	k: 5826	n:10000
SP6   10000 perm   2 sec   (6555 perm/sec)   p_kst 5.826000e-01   p_cons 3.088000e-01   p_joint 8.305000e-01

Outputting figure to mutsig2_images.part000000000164/SP6.3_1135_10000_0.5826_0.3088_0.8305.png
                gene_name: SP6
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 57 percent done.
SPACA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.656160e-02	ci left: 4.050199e-01	ci right 4.244298e-01	k: 4147	n:10000
Cons ci ratio: 2.138797e-02	ci left: 7.622312e-01	ci right 7.788109e-01	k: 7706	n:10000
KS ci ratio: 5.893690e-02	ci left: 2.975703e-01	ci right 3.157424e-01	k: 3066	n:10000
SPACA1   10000 perm   2 sec   (6659 perm/sec)   p_kst 3.066000e-01   p_cons 7.706000e-01   p_joint 4.147000e-01

Outputting figure to mutsig2_images.part000000000164/SPACA1.3_913_10000_0.3066_0.7706_0.4147.png
                gene_name: SPACA1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.42 

Current progress: 60 percent done.
SPACA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.078901e-02	ci left: 2.846853e-01	ci right 3.026351e-01	k: 2936	n:10000
Cons ci ratio: 4.604759e-02	ci left: 4.104006e-01	ci right 4.298460e-01	k: 4201	n:10000
KS ci ratio: 1.057501e-01	ci left: 1.143760e-01	ci right 1.272458e-01	k: 1207	n:10000
SPACA3   10000 perm   1 sec   (6826 perm/sec)   p_kst 1.207000e-01   p_cons 4.201000e-01   p_joint 2.936000e-01

Joint ci ratio: 5.252094e-02	ci left: 2.120960e-01	ci right 2.235861e-01	k: 4356	n:20000
Cons ci ratio: 3.287288e-02	ci left: 4.086579e-01	ci right 4.223667e-01	k: 8310	n:20000
KS ci ratio: 7.576212e-02	ci left: 1.135597e-01	ci right 1.225517e-01	k: 2360	n:20000
SPACA3   20000 perm   3 sec   (5990 perm/sec)   p_kst 1.180000e-01   p_cons 4.155000e-01   p_joint 2.178000e-01

Outputting figure to mutsig2_images.part000000000164/SPACA3.3_668_20000_0.118_0.4155_0.2178.png
                gene_name: SPACA3
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 62 percent done.
SPAG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.128868e-01	ci left: 1.014940e-01	ci right 1.137357e-01	k: 1075	n:10000
Cons ci ratio: 9.584355e-02	ci left: 1.363893e-01	ci right 1.502192e-01	k: 1432	n:10000
KS ci ratio: 1.219806e-01	ci left: 8.786290e-02	ci right 9.937509e-02	k: 935	n:10000
SPAG1   10000 perm   2 sec   (5589 perm/sec)   p_kst 9.350000e-02   p_cons 1.432000e-01   p_joint 1.075000e-01

Joint ci ratio: 9.314475e-02	ci left: 7.754845e-02	ci right 8.517378e-02	k: 1626	n:20000
Cons ci ratio: 6.792498e-02	ci left: 1.378798e-01	ci right 1.476244e-01	k: 2854	n:20000
KS ci ratio: 8.851651e-02	ci left: 8.533364e-02	ci right 9.328623e-02	k: 1785	n:20000
SPAG1   20000 perm   4 sec   (5039 perm/sec)   p_kst 8.925000e-02   p_cons 1.427000e-01   p_joint 8.130000e-02

Outputting figure to mutsig2_images.part000000000164/SPAG1.3_2853_20000_0.08925_0.1427_0.0813.png
                gene_name: SPAG1
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.089 
        ci_ks_bounds_left: 0.085 
       ci_ks_bounds_right: 0.093 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.081 
     ci_joint_bounds_left: 0.078 
    ci_joint_bounds_right: 0.085 

Current progress: 64 percent done.
SPAG5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.935912e-02	ci left: 6.311057e-01	ci right 6.500123e-01	k: 6406	n:10000
KS ci ratio: 1.469696e-02	ci left: 8.701983e-01	ci right 8.831813e-01	k: 8768	n:10000
SPAG5   10000 perm   2 sec   (5317 perm/sec)   p_kst 8.768000e-01   p_cons 6.406000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000164/SPAG5.3_3678_10000_0.8768_0.6406_1.png
                gene_name: SPAG5
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 66 percent done.
SNX24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.762261e-02	ci left: 1.952523e-01	ci right 2.111210e-01	k: 2031	n:10000
Cons ci ratio: 9.995174e-02	ci left: 1.265977e-01	ci right 1.400167e-01	k: 1332	n:10000
KS ci ratio: 2.316878e-02	ci left: 7.323953e-01	ci right 7.496640e-01	k: 7411	n:10000
SNX24   10000 perm   1 sec   (7068 perm/sec)   p_kst 7.411000e-01   p_cons 1.332000e-01   p_joint 2.031000e-01

Outputting figure to mutsig2_images.part000000000164/SNX24.2_538_10000_0.7411_0.1332_0.2031.png
                gene_name: SNX24
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 68 percent done.
SNX33
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.019175e-03	ci left: 9.925085e-01	ci right 9.955930e-01	k: 9942	n:10000
KS ci ratio: 1.506850e-02	ci left: 8.645785e-01	ci right 8.778045e-01	k: 8713	n:10000
SNX33   10000 perm   2 sec   (6655 perm/sec)   p_kst 8.713000e-01   p_cons 9.942000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000164/SNX33.2_1733_10000_0.8713_0.9942_1.png
                gene_name: SNX33
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 1.00 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
SOAT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.382713e-02	ci left: 7.213844e-01	ci right 7.388814e-01	k: 7302	n:10000
KS ci ratio: 1.859077e-02	ci left: 8.086701e-01	ci right 8.239452e-01	k: 8164	n:10000
SOAT2   10000 perm   2 sec   (6479 perm/sec)   p_kst 8.164000e-01   p_cons 7.302000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000164/SOAT2.2_1629_10000_0.8164_0.7302_1.png
                gene_name: SOAT2
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
SOCS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.564151e-02	ci left: 3.223729e-01	ci right 3.409253e-01	k: 3316	n:10000
KS ci ratio: 3.155181e-02	ci left: 5.971464e-01	ci right 6.163914e-01	k: 6068	n:10000
SOCS2   10000 perm   1 sec   (7077 perm/sec)   p_kst 6.068000e-01   p_cons 3.316000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000164/SOCS2.2_605_10000_0.6068_0.3316_1.png
                gene_name: SOCS2
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 74 percent done.
SOCS4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.362938e-02	ci left: 8.859570e-01	ci right 8.982135e-01	k: 8922	n:10000
KS ci ratio: 7.688723e-02	ci left: 1.983069e-01	ci right 2.142646e-01	k: 2062	n:10000
SOCS4   10000 perm   1 sec   (6821 perm/sec)   p_kst 2.062000e-01   p_cons 8.922000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000164/SOCS4.2_1327_10000_0.2062_0.8922_1.png
                gene_name: SOCS4
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
SOCS6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.462184e-02	ci left: 4.257520e-01	ci right 4.452856e-01	k: 4355	n:10000
KS ci ratio: 8.585952e-03	ci left: 9.500226e-01	ci right 9.583102e-01	k: 9543	n:10000
SOCS6   10000 perm   1 sec   (6731 perm/sec)   p_kst 9.543000e-01   p_cons 4.355000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000164/SOCS6.2_1612_10000_0.9543_0.4355_1.png
                gene_name: SOCS6
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
SORBS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.120469e-03	ci left: 9.920588e-01	ci right 9.952433e-01	k: 9938	n:10000
Cons ci ratio: 5.438552e-02	ci left: 3.325008e-01	ci right 3.511914e-01	k: 3418	n:10000
KS ci ratio: 6.602499e-03	ci left: 9.691039e-01	ci right 9.756170e-01	k: 9725	n:10000
SORBS3   10000 perm   2 sec   (6251 perm/sec)   p_kst 9.725000e-01   p_cons 3.418000e-01   p_joint 9.938000e-01

Outputting figure to mutsig2_images.part000000000164/SORBS3.2_2096_10000_0.9725_0.3418_0.9938.png
                gene_name: SORBS3
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 1.00 

Current progress: 81 percent done.
SORCS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.556745e-01	ci left: 9.867770e-03	ci right 1.422343e-02	k: 119	n:10000
Cons ci ratio: 5.395331e-02	ci left: 3.360765e-01	ci right 3.548136e-01	k: 3454	n:10000
KS ci ratio: 4.284655e-01	ci left: 6.526864e-03	ci right 1.016828e-02	k: 82	n:10000
SORCS2   10000 perm   2 sec   (5578 perm/sec)   p_kst 8.200000e-03   p_cons 3.454000e-01   p_joint 1.190000e-02

Joint ci ratio: 1.417063e-01	ci left: 3.423328e-02	ci right 3.950247e-02	k: 736	n:20000
Cons ci ratio: 3.824790e-02	ci left: 3.377130e-01	ci right 3.509322e-01	k: 6886	n:20000
KS ci ratio: 3.029783e-01	ci left: 7.043292e-03	ci right 9.602748e-03	k: 165	n:20000
SORCS2   20000 perm   4 sec   (5015 perm/sec)   p_kst 8.250000e-03   p_cons 3.443000e-01   p_joint 3.680000e-02

Joint ci ratio: 4.504347e-02	ci left: 1.970064e-01	ci right 2.061181e-01	k: 6046	n:30000
Cons ci ratio: 3.129508e-02	ci left: 3.379922e-01	ci right 3.487714e-01	k: 10301	n:30000
KS ci ratio: 2.361634e-01	ci left: 8.025163e-03	ci right 1.020483e-02	k: 272	n:30000
SORCS2   30000 perm   6 sec   (4776 perm/sec)   p_kst 9.066667e-03   p_cons 3.433667e-01   p_joint 2.015333e-01

Joint ci ratio: 2.754693e-02	ci left: 3.314454e-01	ci right 3.407284e-01	k: 13443	n:40000
Cons ci ratio: 2.696914e-02	ci left: 3.409384e-01	ci right 3.502840e-01	k: 13824	n:40000
KS ci ratio: 2.065380e-01	ci left: 8.002900e-03	ci right 9.869438e-03	k: 356	n:40000
SORCS2   40000 perm   9 sec   (4632 perm/sec)   p_kst 8.900000e-03   p_cons 3.456000e-01   p_joint 3.360750e-01

Joint ci ratio: 2.177437e-02	ci left: 3.889747e-01	ci right 3.975577e-01	k: 19663	n:50000
Cons ci ratio: 2.401169e-02	ci left: 3.435046e-01	ci right 3.518730e-01	k: 17384	n:50000
KS ci ratio: 1.831358e-01	ci left: 8.248079e-03	ci right 9.929659e-03	k: 453	n:50000
SORCS2   50000 perm   11 sec   (4518 perm/sec)   p_kst 9.060000e-03   p_cons 3.476800e-01   p_joint 3.932600e-01

Joint ci ratio: 2.635871e-02	ci left: 2.657700e-01	ci right 2.728856e-01	k: 16159	n:60000
Cons ci ratio: 2.276261e-02	ci left: 3.270020e-01	ci right 3.345477e-01	k: 19846	n:60000
KS ci ratio: 1.690368e-01	ci left: 8.132065e-03	ci right 9.649344e-03	k: 532	n:60000
SORCS2   60000 perm   14 sec   (4416 perm/sec)   p_kst 8.866667e-03   p_cons 3.307667e-01   p_joint 2.693167e-01

Joint ci ratio: 1.914342e-02	ci left: 3.710125e-01	ci right 3.781979e-01	k: 26222	n:70000
Cons ci ratio: 2.107328e-02	ci left: 3.273002e-01	ci right 3.342852e-01	k: 23155	n:70000
KS ci ratio: 1.575019e-01	ci left: 8.080230e-03	ci right 9.475232e-03	k: 613	n:70000
SORCS2   70000 perm   16 sec   (4332 perm/sec)   p_kst 8.757143e-03   p_cons 3.307857e-01   p_joint 3.746000e-01

Joint ci ratio: 2.285539e-02	ci left: 2.657674e-01	ci right 2.719243e-01	k: 21507	n:80000
Cons ci ratio: 1.970613e-02	ci left: 3.276643e-01	ci right 3.341980e-01	k: 26474	n:80000
KS ci ratio: 1.470882e-01	ci left: 8.152388e-03	ci right 9.458607e-03	k: 703	n:80000
SORCS2   80000 perm   19 sec   (4252 perm/sec)   p_kst 8.787500e-03   p_cons 3.309250e-01   p_joint 2.688375e-01

Joint ci ratio: 1.570572e-02	ci left: 4.058187e-01	ci right 4.122539e-01	k: 36813	n:90000
Cons ci ratio: 1.859282e-02	ci left: 3.275265e-01	ci right 3.336844e-01	k: 29754	n:90000
KS ci ratio: 1.393881e-01	ci left: 8.103600e-03	ci right 9.328381e-03	k: 783	n:90000
SORCS2   90000 perm   22 sec   (4179 perm/sec)   p_kst 8.700000e-03   p_cons 3.306000e-01   p_joint 4.090333e-01

Joint ci ratio: 1.516505e-02	ci left: 3.974909e-01	ci right 4.035749e-01	k: 40053	n:100000
Cons ci ratio: 1.762481e-02	ci left: 3.280335e-01	ci right 3.338763e-01	k: 33095	n:100000
KS ci ratio: 1.311096e-01	ci left: 8.278798e-03	ci right 9.449956e-03	k: 885	n:100000
SORCS2   100000 perm   24 sec   (4110 perm/sec)   p_kst 8.850000e-03   p_cons 3.309500e-01   p_joint 4.005300e-01

Joint ci ratio: 1.419725e-02	ci left: 4.064375e-01	ci right 4.122581e-01	k: 45028	n:110000
Cons ci ratio: 1.679652e-02	ci left: 3.283824e-01	ci right 3.339538e-01	k: 36428	n:110000
KS ci ratio: 1.239602e-01	ci left: 8.450333e-03	ci right 9.575783e-03	k: 990	n:110000
SORCS2   110000 perm   27 sec   (4044 perm/sec)   p_kst 9.000000e-03   p_cons 3.311636e-01   p_joint 4.093455e-01

Joint ci ratio: 3.475291e-03	ci left: 9.122147e-01	ci right 9.153986e-01	k: 109658	n:120000
Cons ci ratio: 1.547445e-02	ci left: 3.457287e-01	ci right 3.511286e-01	k: 41811	n:120000
KS ci ratio: 1.186879e-01	ci left: 8.473388e-03	ci right 9.550541e-03	k: 1080	n:120000
SORCS2   120000 perm   30 sec   (3981 perm/sec)   p_kst 9.000000e-03   p_cons 3.484250e-01   p_joint 9.138167e-01

Joint ci ratio: 9.235195e-03	ci left: 5.781814e-01	ci right 5.835534e-01	k: 75513	n:130000
Cons ci ratio: 1.485990e-02	ci left: 3.460629e-01	ci right 3.512515e-01	k: 45325	n:130000
KS ci ratio: 1.141835e-01	ci left: 8.471331e-03	ci right 9.504596e-03	k: 1167	n:130000
SORCS2   130000 perm   33 sec   (3918 perm/sec)   p_kst 8.976923e-03   p_cons 3.486538e-01   p_joint 5.808692e-01

Joint ci ratio: 8.886696e-03	ci left: 5.789679e-01	ci right 5.841430e-01	k: 81418	n:140000
Cons ci ratio: 1.430847e-02	ci left: 3.465028e-01	ci right 3.515035e-01	k: 48860	n:140000
KS ci ratio: 1.096282e-01	ci left: 8.553609e-03	ci right 9.552598e-03	k: 1266	n:140000
SORCS2   140000 perm   36 sec   (3859 perm/sec)   p_kst 9.042857e-03   p_cons 3.490000e-01   p_joint 5.815571e-01

Joint ci ratio: 8.592258e-03	ci left: 5.786650e-01	ci right 5.836652e-01	k: 87175	n:150000
Cons ci ratio: 1.383528e-02	ci left: 3.461948e-01	ci right 3.510244e-01	k: 52291	n:150000
KS ci ratio: 1.058519e-01	ci left: 8.580181e-03	ci right 9.545605e-03	k: 1358	n:150000
SORCS2   150000 perm   39 sec   (3803 perm/sec)   p_kst 9.053333e-03   p_cons 3.486067e-01   p_joint 5.811667e-01

Joint ci ratio: 8.322271e-03	ci left: 5.785778e-01	ci right 5.834192e-01	k: 92960	n:160000
Cons ci ratio: 1.341000e-02	ci left: 3.457967e-01	ci right 3.504713e-01	k: 55701	n:160000
KS ci ratio: 1.017007e-01	ci left: 8.731877e-03	ci right 9.673537e-03	k: 1471	n:160000
SORCS2   160000 perm   43 sec   (3749 perm/sec)   p_kst 9.193750e-03   p_cons 3.481313e-01   p_joint 5.810000e-01

Joint ci ratio: 6.675464e-03	ci left: 6.675527e-01	ci right 6.720297e-01	k: 113865	n:170000
Cons ci ratio: 1.300664e-02	ci left: 3.459703e-01	ci right 3.505055e-01	k: 59200	n:170000
KS ci ratio: 9.831581e-02	ci left: 8.808983e-03	ci right 9.725517e-03	k: 1574	n:170000
SORCS2   170000 perm   46 sec   (3697 perm/sec)   p_kst 9.258824e-03   p_cons 3.482353e-01   p_joint 6.697941e-01

Outputting figure to mutsig2_images.part000000000164/SORCS2.2_3588_170000_0.0092588_0.34824_0.66979.png
                gene_name: SORCS2
               theta_stop: 0.098 
                    nperm: 170000 
                     p_ks: 0.0093 
        ci_ks_bounds_left: 0.0088 
       ci_ks_bounds_right: 0.0097 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.67 

Current progress: 83 percent done.
SOX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.010278e-02	ci left: 6.194455e-01	ci right 6.384793e-01	k: 6290	n:10000
Cons ci ratio: 7.671024e-03	ci left: 9.593225e-01	ci right 9.668046e-01	k: 9632	n:10000
KS ci ratio: 7.607495e-02	ci left: 2.017565e-01	ci right 2.178129e-01	k: 2097	n:10000
SOX1   10000 perm   2 sec   (6623 perm/sec)   p_kst 2.097000e-01   p_cons 9.632000e-01   p_joint 6.290000e-01

Outputting figure to mutsig2_images.part000000000164/SOX1.2_1180_10000_0.2097_0.9632_0.629.png
                gene_name: SOX1
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 85 percent done.
SOX11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.542238e-02	ci left: 8.591667e-01	ci right 8.726194e-01	k: 8660	n:10000
KS ci ratio: 7.968333e-03	ci left: 9.563913e-01	ci right 9.641376e-01	k: 9604	n:10000
SOX11   10000 perm   2 sec   (6568 perm/sec)   p_kst 9.604000e-01   p_cons 8.660000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000164/SOX11.2_1330_10000_0.9604_0.866_1.png
                gene_name: SOX11
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
SOX3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.808936e-02	ci left: 6.513244e-01	ci right 6.699820e-01	k: 6607	n:10000
Cons ci ratio: 6.421114e-02	ci left: 2.627020e-01	ci right 2.802313e-01	k: 2714	n:10000
KS ci ratio: 8.216589e-02	ci left: 1.777272e-01	ci right 1.930565e-01	k: 1853	n:10000
SOX3   10000 perm   2 sec   (6513 perm/sec)   p_kst 1.853000e-01   p_cons 2.714000e-01   p_joint 6.607000e-01

Outputting figure to mutsig2_images.part000000000164/SOX3.2_1345_10000_0.1853_0.2714_0.6607.png
                gene_name: SOX3
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 89 percent done.
SP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.889386e-02	ci left: 8.036941e-01	ci right 8.191241e-01	k: 8115	n:10000
KS ci ratio: 2.110964e-02	ci left: 7.668886e-01	ci right 7.833508e-01	k: 7752	n:10000
SP1   10000 perm   2 sec   (6040 perm/sec)   p_kst 7.752000e-01   p_cons 8.115000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000164/SP1.2_2382_10000_0.7752_0.8115_1.png
                gene_name: SP1
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
SP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.756639e-02	ci left: 5.113540e-01	ci right 5.310336e-01	k: 5212	n:10000
Cons ci ratio: 6.270362e-02	ci left: 2.721060e-01	ci right 2.898218e-01	k: 2809	n:10000
KS ci ratio: 1.234410e-01	ci left: 8.591861e-02	ci right 9.732058e-02	k: 915	n:10000
SP2   10000 perm   2 sec   (6296 perm/sec)   p_kst 9.150000e-02   p_cons 2.809000e-01   p_joint 5.212000e-01

Joint ci ratio: 5.681600e-02	ci left: 1.867592e-01	ci right 1.977305e-01	k: 3844	n:20000
Cons ci ratio: 4.636475e-02	ci left: 2.571563e-01	ci right 2.694126e-01	k: 5265	n:20000
KS ci ratio: 8.697452e-02	ci left: 8.817594e-02	ci right 9.624307e-02	k: 1843	n:20000
SP2   20000 perm   4 sec   (5575 perm/sec)   p_kst 9.215000e-02   p_cons 2.632500e-01   p_joint 1.922000e-01

Outputting figure to mutsig2_images.part000000000164/SP2.2_1870_20000_0.09215_0.26325_0.1922.png
                gene_name: SP2
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.092 
        ci_ks_bounds_left: 0.088 
       ci_ks_bounds_right: 0.096 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 94 percent done.
SP7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.175662e-02	ci left: 7.560573e-01	ci right 7.727884e-01	k: 7645	n:10000
Cons ci ratio: 3.351839e-02	ci left: 5.678475e-01	ci right 5.873073e-01	k: 5776	n:10000
KS ci ratio: 4.747495e-02	ci left: 3.956563e-01	ci right 4.149989e-01	k: 4053	n:10000
SP7   10000 perm   2 sec   (6567 perm/sec)   p_kst 4.053000e-01   p_cons 5.776000e-01   p_joint 7.645000e-01

Outputting figure to mutsig2_images.part000000000164/SP7.2_1304_10000_0.4053_0.5776_0.7645.png
                gene_name: SP7
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 96 percent done.
SPAG11A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.429303e-02	ci left: 7.136100e-01	ci right 7.312602e-01	k: 7225	n:10000
Cons ci ratio: 3.679107e-02	ci left: 5.217618e-01	ci right 5.414198e-01	k: 5316	n:10000
KS ci ratio: 8.513967e-02	ci left: 1.674016e-01	ci right 1.823882e-01	k: 1748	n:10000
SPAG11A   10000 perm   1 sec   (7156 perm/sec)   p_kst 1.748000e-01   p_cons 5.316000e-01   p_joint 7.225000e-01

Outputting figure to mutsig2_images.part000000000164/SPAG11A.2_343_10000_0.1748_0.5316_0.7225.png
                gene_name: SPAG11A
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 98 percent done.
SPAG11B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.671421e-03	ci left: 9.893898e-01	ci right 9.931155e-01	k: 9914	n:10000
Cons ci ratio: 2.302997e-02	ci left: 7.347196e-01	ci right 7.519384e-01	k: 7434	n:10000
KS ci ratio: 3.327861e-02	ci left: 5.713575e-01	ci right 5.907953e-01	k: 5811	n:10000
SPAG11B   10000 perm   1 sec   (6696 perm/sec)   p_kst 5.811000e-01   p_cons 7.434000e-01   p_joint 9.914000e-01

Outputting figure to mutsig2_images.part000000000164/SPAG11B.2_1078_10000_0.5811_0.7434_0.9914.png
                gene_name: SPAG11B
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000164
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 164 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1700>
Subject: Job 8004569: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1700>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000165> was used as the working directory.
Started at Sun Nov 11 15:19:22 2012
Results reported at Sun Nov 11 15:26:25 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000165.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000165.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 165  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000165.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    457.69 sec.
    Max Memory :      4704 MB
    Max Swap   :      7042 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
165
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 165
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 165: processing genes 14838 - 14928
Calculating significance of each gene.
Using projection method.
14838	SPAG7	1
14839	SPAG8	1
14840	SPAG9	9.792463e-01
14841	SPAM1	5.118847e-01
14842	SPANXC	1.772642e-01
14843	SPANXD	1
14844	SPANXE	1
14845	SPANXN1	1.174572e-05
14846	SPANXN2	1
14847	SPANXN3	1.435617e-01
14848	SPANXN4	1
14849	SPANXN5	4.274123e-03
14850	SPARC	1
14851	SPARCL1	5.916658e-01
14852	SPAST	3.335113e-02
14853	SPATA1	1
14854	SPATA12	4.320080e-01
14855	SPATA13	1
14856	SPATA16	2.742660e-01
14857	SPATA17	1.783900e-01
14858	SPATA18	1.001175e-01
14859	SPATA19	1.237578e-01
14860	SPATA2	1.954887e-02
14861	SPATA20	6.785254e-01
14862	SPATA21	4.520048e-01
14863	SPATA22	1.595359e-01
14864	SPATA2L	1
14865	SPATA4	5.640418e-03
14866	SPATA5	1
14867	SPATA5L1	8.542397e-01
14868	SPATA6	3.871815e-01
14869	SPATA7	8.889512e-03
14870	SPATA8	1.695498e-03
14871	SPATA9	1
14872	SPATC1	5.518561e-01
14873	SPATS1	5.096828e-01
14874	SPATS2	7.342307e-01
14875	SPATS2L	1.270518e-01
14876	SPC24	1
14877	SPC25	1
14878	SPCS1	1.891190e-01
14879	SPCS2	1
14880	SPCS3	3.743417e-02
14881	SPDEF	2.387124e-01
14882	SPDYA	4.995360e-01
14883	SPDYC	1
14884	SPDYE1	1
14885	SPDYE3	1
14886	SPDYE4	1
14887	SPDYE5	1
14888	SPDYE6	1
14889	SPEF1	2.752631e-01
14890	SPEF2	9.889376e-01
14891	SPEG	9.718048e-01
14892	SPEM1	1.964606e-01
14893	SPEN	9.999996e-01
14894	SPERT	8.045235e-01
14895	SPESP1	4.314336e-02
14896	SPG11	5.605279e-01
14897	SPG20	3.415658e-01
14898	SPG21	6.785124e-01
14899	SPG7	9.208733e-01
14900	SPHAR	1
14901	SPHK1	1
14902	SPHK2	9.159487e-01
14903	SPHKAP	2.987318e-06
14904	SPI1	5.153183e-01
14905	SPIB	1.859862e-01
14906	SPIC	4.591841e-02
14907	SPIN1	3.781947e-01
14908	SPIN2A	1
14909	SPIN2B	1
14910	SPIN3	1
14911	SPIN4	1.951216e-02
14912	SPINK1	1
14913	SPINK13	8.514212e-02
14914	SPINK14	1
14915	SPINK2	1.314565e-01
14916	SPINK4	1.722701e-01
14917	SPINK5	7.279563e-01
14918	SPINK6	1
14919	SPINK7	1
14920	SPINK8	1
14921	SPINK9	1
14922	SPINLW1	4.625717e-02
14923	SPINT1	6.542642e-01
14924	SPINT2	3.149407e-01
14925	SPINT4	3.447635e-02
14926	SPIRE1	8.157367e-01
14927	SPIRE2	4.638294e-02
14928	SPN	1
Done

Running MutSig 2:
Scatter job 165: processing genes 14838 - 14928
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SPHKAP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.484613e-02	ci left: 8.679499e-01	ci right 8.810311e-01	k: 8746	n:10000
Cons ci ratio: 8.895760e-03	ci left: 9.466899e-01	ci right 9.552449e-01	k: 9511	n:10000
KS ci ratio: 2.243266e-02	ci left: 7.447278e-01	ci right 7.617245e-01	k: 7533	n:10000
SPHKAP   10000 perm   3 sec   (3696 perm/sec)   p_kst 7.533000e-01   p_cons 9.511000e-01   p_joint 8.746000e-01

Outputting figure to mutsig2_images.part000000000165/SPHKAP.34_5151_10000_0.7533_0.9511_0.8746.png
                gene_name: SPHKAP
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 2 percent done.
SPEF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.322340e-01	ci left: 2.447729e-02	ci right 3.100172e-02	k: 276	n:10000
Cons ci ratio: 8.661395e-02	ci left: 1.625864e-01	ci right 1.774064e-01	k: 1699	n:10000
KS ci ratio: 2.371212e-01	ci left: 2.344048e-02	ci right 2.983930e-02	k: 265	n:10000
SPEF2   10000 perm   2 sec   (4234 perm/sec)   p_kst 2.650000e-02   p_cons 1.699000e-01   p_joint 2.760000e-02

Joint ci ratio: 1.263002e-01	ci left: 4.304094e-02	ci right 4.889198e-02	k: 918	n:20000
Cons ci ratio: 6.211766e-02	ci left: 1.608671e-01	ci right 1.712301e-01	k: 3320	n:20000
KS ci ratio: 1.665517e-01	ci left: 2.470171e-02	ci right 2.923722e-02	k: 538	n:20000
SPEF2   20000 perm   5 sec   (3903 perm/sec)   p_kst 2.690000e-02   p_cons 1.660000e-01   p_joint 4.590000e-02

Joint ci ratio: 1.043401e-01	ci left: 4.258416e-02	ci right 4.730447e-02	k: 1347	n:30000
Cons ci ratio: 5.101102e-02	ci left: 1.602549e-01	ci right 1.686769e-01	k: 4933	n:30000
KS ci ratio: 1.356884e-01	ci left: 2.522737e-02	ci right 2.893165e-02	k: 811	n:30000
SPEF2   30000 perm   8 sec   (3781 perm/sec)   p_kst 2.703333e-02   p_cons 1.644333e-01   p_joint 4.490000e-02

Joint ci ratio: 1.027255e-01	ci left: 3.331783e-02	ci right 3.695006e-02	k: 1404	n:40000
Cons ci ratio: 4.441825e-02	ci left: 1.593428e-01	ci right 1.666062e-01	k: 6518	n:40000
KS ci ratio: 1.149527e-01	ci left: 2.662382e-02	ci right 2.989514e-02	k: 1129	n:40000
SPEF2   40000 perm   11 sec   (3676 perm/sec)   p_kst 2.822500e-02   p_cons 1.629500e-01   p_joint 3.510000e-02

Joint ci ratio: 9.669967e-02	ci left: 3.027922e-02	ci right 3.337545e-02	k: 1590	n:50000
Cons ci ratio: 3.991564e-02	ci left: 1.584627e-01	ci right 1.649366e-01	k: 8084	n:50000
KS ci ratio: 1.017653e-01	ci left: 2.735147e-02	ci right 3.030357e-02	k: 1440	n:50000
SPEF2   50000 perm   14 sec   (3601 perm/sec)   p_kst 2.880000e-02   p_cons 1.616800e-01   p_joint 3.180000e-02

Joint ci ratio: 8.251545e-02	ci left: 3.475222e-02	ci right 3.775952e-02	k: 2174	n:60000
Cons ci ratio: 3.652998e-02	ci left: 1.580673e-01	ci right 1.639655e-01	k: 9660	n:60000
KS ci ratio: 9.257403e-02	ci left: 2.767178e-02	ci right 3.037403e-02	k: 1740	n:60000
SPEF2   60000 perm   17 sec   (3534 perm/sec)   p_kst 2.900000e-02   p_cons 1.610000e-01   p_joint 3.623333e-02

Outputting figure to mutsig2_images.part000000000165/SPEF2.12_5638_60000_0.029_0.161_0.036233.png
                gene_name: SPEF2
               theta_stop: 0.093 
                    nperm: 60000 
                     p_ks: 0.029 
        ci_ks_bounds_left: 0.028 
       ci_ks_bounds_right: 0.030 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.036 
     ci_joint_bounds_left: 0.035 
    ci_joint_bounds_right: 0.038 

Current progress: 4 percent done.
SPG11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.869324e-02	ci left: 1.909179e-01	ci right 2.066579e-01	k: 1987	n:10000
Cons ci ratio: 5.784639e-02	ci left: 3.055038e-01	ci right 3.238042e-01	k: 3146	n:10000
KS ci ratio: 6.635571e-02	ci left: 2.500393e-01	ci right 2.673015e-01	k: 2586	n:10000
SPG11   10000 perm   3 sec   (3670 perm/sec)   p_kst 2.586000e-01   p_cons 3.146000e-01   p_joint 1.987000e-01

Outputting figure to mutsig2_images.part000000000165/SPG11.11_7492_10000_0.2586_0.3146_0.1987.png
                gene_name: SPG11
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 7 percent done.
SPEG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.838216e-02	ci left: 1.302192e-01	ci right 1.437930e-01	k: 1369	n:10000
Cons ci ratio: 2.240477e-01	ci left: 2.636581e-02	ci right 3.311184e-02	k: 296	n:10000
KS ci ratio: 1.923265e-02	ci left: 7.981111e-01	ci right 8.137103e-01	k: 8060	n:10000
SPEG   10000 perm   3 sec   (3407 perm/sec)   p_kst 8.060000e-01   p_cons 2.960000e-02   p_joint 1.369000e-01

Joint ci ratio: 7.392778e-02	ci left: 1.186750e-01	ci right 1.278348e-01	k: 2464	n:20000
Cons ci ratio: 1.663931e-01	ci left: 2.474968e-02	ci right 2.928924e-02	k: 539	n:20000
KS ci ratio: 1.329846e-02	ci left: 8.074248e-01	ci right 8.182841e-01	k: 16258	n:20000
SPEG   20000 perm   6 sec   (3151 perm/sec)   p_kst 8.129000e-01   p_cons 2.695000e-02   p_joint 1.232000e-01

Joint ci ratio: 5.027503e-02	ci left: 1.642469e-01	ci right 1.727507e-01	k: 5054	n:30000
Cons ci ratio: 1.292833e-01	ci left: 2.780802e-02	ci right 3.168376e-02	k: 891	n:30000
KS ci ratio: 1.082949e-02	ci left: 8.092472e-01	ci right 8.180919e-01	k: 24411	n:30000
SPEG   30000 perm   10 sec   (3052 perm/sec)   p_kst 8.137000e-01   p_cons 2.970000e-02   p_joint 1.684667e-01

Joint ci ratio: 4.651113e-02	ci left: 1.472813e-01	ci right 1.543195e-01	k: 6031	n:40000
Cons ci ratio: 1.126153e-01	ci left: 2.774198e-02	ci right 3.107680e-02	k: 1175	n:40000
KS ci ratio: 9.358458e-03	ci left: 8.105043e-01	ci right 8.181500e-01	k: 32574	n:40000
SPEG   40000 perm   13 sec   (3006 perm/sec)   p_kst 8.143500e-01   p_cons 2.937500e-02   p_joint 1.507750e-01

Joint ci ratio: 5.009564e-02	ci left: 1.063603e-01	ci right 1.118452e-01	k: 5454	n:50000
Cons ci ratio: 9.999294e-02	ci left: 2.832695e-02	ci right 3.132797e-02	k: 1490	n:50000
KS ci ratio: 8.374587e-03	ci left: 8.107626e-01	ci right 8.176009e-01	k: 40710	n:50000
SPEG   50000 perm   17 sec   (2974 perm/sec)   p_kst 8.142000e-01   p_cons 2.980000e-02   p_joint 1.090800e-01

Outputting figure to mutsig2_images.part000000000165/SPEG.10_9980_50000_0.8142_0.0298_0.10908.png
                gene_name: SPEG
               theta_stop: 0.100 
                    nperm: 50000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.030 
      ci_cons_bounds_left: 0.028 
     ci_cons_bounds_right: 0.031 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 9 percent done.
SPANXN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.107243e-02	ci left: 1.491353e-01	ci right 1.634655e-01	k: 1562	n:10000
Cons ci ratio: 1.616482e-02	ci left: 8.476398e-01	ci right 8.615529e-01	k: 8547	n:10000
KS ci ratio: 1.207744e-01	ci left: 8.951617e-02	ci right 1.011208e-01	k: 952	n:10000
SPANXN2   10000 perm   2 sec   (6292 perm/sec)   p_kst 9.520000e-02   p_cons 8.547000e-01   p_joint 1.562000e-01

Joint ci ratio: 5.573271e-02	ci left: 1.927438e-01	ci right 2.038440e-01	k: 3965	n:20000
Cons ci ratio: 1.142948e-02	ci left: 8.497395e-01	ci right 8.595572e-01	k: 17094	n:20000
KS ci ratio: 8.459497e-02	ci left: 9.283400e-02	ci right 1.010836e-01	k: 1938	n:20000
SPANXN2   20000 perm   4 sec   (5620 perm/sec)   p_kst 9.690000e-02   p_cons 8.547000e-01   p_joint 1.982500e-01

Outputting figure to mutsig2_images.part000000000165/SPANXN2.7_551_20000_0.0969_0.8547_0.19825.png
                gene_name: SPANXN2
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.097 
        ci_ks_bounds_left: 0.093 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 11 percent done.
SPATA16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.888151e-02	ci left: 2.979669e-01	ci right 3.161456e-01	k: 3070	n:10000
Cons ci ratio: 1.092244e-01	ci left: 1.078341e-01	ci right 1.203917e-01	k: 1140	n:10000
KS ci ratio: 3.027066e-02	ci left: 6.168328e-01	ci right 6.358936e-01	k: 6264	n:10000
SPATA16   10000 perm   2 sec   (5411 perm/sec)   p_kst 6.264000e-01   p_cons 1.140000e-01   p_joint 3.070000e-01

Joint ci ratio: 4.664121e-02	ci left: 2.548739e-01	ci right 2.670957e-01	k: 5219	n:20000
Cons ci ratio: 7.974153e-02	ci left: 1.034850e-01	ci right 1.121294e-01	k: 2155	n:20000
KS ci ratio: 2.143535e-02	ci left: 6.190003e-01	ci right 6.324631e-01	k: 12515	n:20000
SPATA16   20000 perm   4 sec   (4903 perm/sec)   p_kst 6.257500e-01   p_cons 1.077500e-01   p_joint 2.609500e-01

Outputting figure to mutsig2_images.part000000000165/SPATA16.7_1750_20000_0.62575_0.10775_0.26095.png
                gene_name: SPATA16
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 13 percent done.
SPATA7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.073529e-02	ci left: 9.251327e-01	ci right 9.352150e-01	k: 9303	n:10000
Cons ci ratio: 4.620859e-02	ci left: 4.087065e-01	ci right 4.281410e-01	k: 4184	n:10000
KS ci ratio: 2.110964e-02	ci left: 7.668886e-01	ci right 7.833508e-01	k: 7752	n:10000
SPATA7   10000 perm   2 sec   (5354 perm/sec)   p_kst 7.752000e-01   p_cons 4.184000e-01   p_joint 9.303000e-01

Outputting figure to mutsig2_images.part000000000165/SPATA7.7_1848_10000_0.7752_0.4184_0.9303.png
                gene_name: SPATA7
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 16 percent done.
SPEN
Processing conservation and coverage...
90% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.906018e-02	ci left: 6.358318e-01	ci right 6.546835e-01	k: 6453	n:10000
Cons ci ratio: 2.925084e-02	ci left: 6.328151e-01	ci right 6.517020e-01	k: 6423	n:10000
KS ci ratio: 4.004187e-02	ci left: 4.794567e-01	ci right 4.991495e-01	k: 4893	n:10000
SPEN   10000 perm   3 sec   (3536 perm/sec)   p_kst 4.893000e-01   p_cons 6.423000e-01   p_joint 6.453000e-01

Outputting figure to mutsig2_images.part000000000165/SPEN.7_11055_10000_0.4893_0.6423_0.6453.png
                gene_name: SPEN
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.65 

Current progress: 18 percent done.
SPAM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.312167e-02	ci left: 5.736643e-01	ci right 5.930871e-01	k: 5834	n:10000
Cons ci ratio: 6.691387e-02	ci left: 2.468751e-01	ci right 2.640676e-01	k: 2554	n:10000
KS ci ratio: 3.190330e-02	ci left: 5.918258e-01	ci right 6.111151e-01	k: 6015	n:10000
SPAM1   10000 perm   2 sec   (5814 perm/sec)   p_kst 6.015000e-01   p_cons 2.554000e-01   p_joint 5.834000e-01

Outputting figure to mutsig2_images.part000000000165/SPAM1.6_1597_10000_0.6015_0.2554_0.5834.png
                gene_name: SPAM1
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 20 percent done.
SPATA18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.250553e-02	ci left: 5.827935e-01	ci right 6.021526e-01	k: 5925	n:10000
Cons ci ratio: 7.894111e-02	ci left: 1.899330e-01	ci right 2.056434e-01	k: 1977	n:10000
KS ci ratio: 3.650398e-02	ci left: 5.256658e-01	ci right 5.453136e-01	k: 5355	n:10000
SPATA18   10000 perm   2 sec   (5800 perm/sec)   p_kst 5.355000e-01   p_cons 1.977000e-01   p_joint 5.925000e-01

Outputting figure to mutsig2_images.part000000000165/SPATA18.6_1669_10000_0.5355_0.1977_0.5925.png
                gene_name: SPATA18
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 22 percent done.
SPATA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.851811e-02	ci left: 4.988503e-01	ci right 5.185446e-01	k: 5087	n:10000
Cons ci ratio: 7.090273e-02	ci left: 2.257305e-01	ci right 2.424247e-01	k: 2340	n:10000
KS ci ratio: 2.929540e-02	ci left: 6.321112e-01	ci right 6.510063e-01	k: 6416	n:10000
SPATA2   10000 perm   2 sec   (5531 perm/sec)   p_kst 6.416000e-01   p_cons 2.340000e-01   p_joint 5.087000e-01

Outputting figure to mutsig2_images.part000000000165/SPATA2.6_1571_10000_0.6416_0.234_0.5087.png
                gene_name: SPATA2
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 24 percent done.
SPATA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.854893e-02	ci left: 1.298276e-01	ci right 1.433848e-01	k: 1365	n:10000
Cons ci ratio: 1.485455e-01	ci left: 6.024541e-02	ci right 7.000980e-02	k: 650	n:10000
KS ci ratio: 5.648024e-02	ci left: 3.158221e-01	ci right 3.342799e-01	k: 3250	n:10000
SPATA4   10000 perm   2 sec   (6146 perm/sec)   p_kst 3.250000e-01   p_cons 6.500000e-02   p_joint 1.365000e-01

Joint ci ratio: 6.634702e-02	ci left: 1.436475e-01	ci right 1.535549e-01	k: 2971	n:20000
Cons ci ratio: 1.085607e-01	ci left: 5.786828e-02	ci right 6.455999e-02	k: 1223	n:20000
KS ci ratio: 4.011115e-02	ci left: 3.166695e-01	ci right 3.296819e-01	k: 6463	n:20000
SPATA4   20000 perm   4 sec   (5485 perm/sec)   p_kst 3.231500e-01   p_cons 6.115000e-02   p_joint 1.485500e-01

Joint ci ratio: 6.184504e-02	ci left: 1.144356e-01	ci right 1.217718e-01	k: 3542	n:30000
Cons ci ratio: 8.957925e-02	ci left: 5.730604e-02	ci right 6.271289e-02	k: 1799	n:30000
KS ci ratio: 3.227254e-02	ci left: 3.243140e-01	ci right 3.349857e-01	k: 9889	n:30000
SPATA4   30000 perm   6 sec   (5239 perm/sec)   p_kst 3.296333e-01   p_cons 5.996667e-02   p_joint 1.180667e-01

Outputting figure to mutsig2_images.part000000000165/SPATA4.6_942_30000_0.32963_0.059967_0.11807.png
                gene_name: SPATA4
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.060 
      ci_cons_bounds_left: 0.057 
     ci_cons_bounds_right: 0.063 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 27 percent done.
SPIRE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.306014e-02	ci left: 7.342143e-01	ci right 7.514440e-01	k: 7429	n:10000
Cons ci ratio: 2.252316e-02	ci left: 7.432110e-01	ci right 7.602421e-01	k: 7518	n:10000
KS ci ratio: 3.837967e-02	ci left: 5.006505e-01	ci right 5.203434e-01	k: 5105	n:10000
SPIRE2   10000 perm   2 sec   (5353 perm/sec)   p_kst 5.105000e-01   p_cons 7.518000e-01   p_joint 7.429000e-01

Outputting figure to mutsig2_images.part000000000165/SPIRE2.6_2205_10000_0.5105_0.7518_0.7429.png
                gene_name: SPIRE2
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 29 percent done.
SPANXN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.691072e-02	ci left: 1.982083e-01	ci right 2.141632e-01	k: 2061	n:10000
Cons ci ratio: 5.645451e-02	ci left: 3.160206e-01	ci right 3.344813e-01	k: 3252	n:10000
KS ci ratio: 1.030980e-01	ci left: 1.197510e-01	ci right 1.328675e-01	k: 1262	n:10000
SPANXN1   10000 perm   2 sec   (6454 perm/sec)   p_kst 1.262000e-01   p_cons 3.252000e-01   p_joint 2.061000e-01

Joint ci ratio: 4.786282e-02	ci left: 2.451016e-01	ci right 2.571708e-01	k: 5022	n:20000
Cons ci ratio: 3.965715e-02	ci left: 3.216430e-01	ci right 3.347070e-01	k: 6563	n:20000
KS ci ratio: 7.188020e-02	ci left: 1.247774e-01	ci right 1.341306e-01	k: 2588	n:20000
SPANXN1   20000 perm   3 sec   (5747 perm/sec)   p_kst 1.294000e-01   p_cons 3.281500e-01   p_joint 2.511000e-01

Outputting figure to mutsig2_images.part000000000165/SPANXN1.5_227_20000_0.1294_0.32815_0.2511.png
                gene_name: SPANXN1
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 31 percent done.
SPAST
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.621813e-02	ci left: 6.817379e-01	ci right 6.999508e-01	k: 6909	n:10000
Cons ci ratio: 2.915544e-02	ci left: 6.343234e-01	ci right 6.531928e-01	k: 6438	n:10000
KS ci ratio: 4.940915e-02	ci left: 3.766417e-01	ci right 3.958246e-01	k: 3862	n:10000
SPAST   10000 perm   2 sec   (5435 perm/sec)   p_kst 3.862000e-01   p_cons 6.438000e-01   p_joint 6.909000e-01

Outputting figure to mutsig2_images.part000000000165/SPAST.5_1919_10000_0.3862_0.6438_0.6909.png
                gene_name: SPAST
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 33 percent done.
SPATA8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.645451e-02	ci left: 3.160206e-01	ci right 3.344813e-01	k: 3252	n:10000
Cons ci ratio: 9.788599e-02	ci left: 1.313941e-01	ci right 1.450174e-01	k: 1381	n:10000
KS ci ratio: 2.899040e-02	ci left: 6.369381e-01	ci right 6.557766e-01	k: 6464	n:10000
SPATA8   10000 perm   2 sec   (5634 perm/sec)   p_kst 6.464000e-01   p_cons 1.381000e-01   p_joint 3.252000e-01

Outputting figure to mutsig2_images.part000000000165/SPATA8.5_330_10000_0.6464_0.1381_0.3252.png
                gene_name: SPATA8
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 36 percent done.
SPINK5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.329487e-02	ci left: 4.406142e-01	ci right 4.602147e-01	k: 4504	n:10000
Cons ci ratio: 4.900521e-02	ci left: 3.805230e-01	ci right 3.997410e-01	k: 3901	n:10000
KS ci ratio: 8.069985e-02	ci left: 1.831396e-01	ci right 1.986409e-01	k: 1908	n:10000
SPINK5   10000 perm   2 sec   (5022 perm/sec)   p_kst 1.908000e-01   p_cons 3.901000e-01   p_joint 4.504000e-01

Outputting figure to mutsig2_images.part000000000165/SPINK5.5_3433_10000_0.1908_0.3901_0.4504.png
                gene_name: SPINK5
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 38 percent done.
SPATS2L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.223412e-02	ci left: 9.055571e-01	ci right 9.168020e-01	k: 9113	n:10000
Cons ci ratio: 2.050926e-02	ci left: 7.769169e-01	ci right 7.931167e-01	k: 7851	n:10000
KS ci ratio: 2.715515e-02	ci left: 6.664250e-01	ci right 6.848726e-01	k: 6757	n:10000
SPATS2L   10000 perm   2 sec   (5659 perm/sec)   p_kst 6.757000e-01   p_cons 7.851000e-01   p_joint 9.113000e-01

Outputting figure to mutsig2_images.part000000000165/SPATS2L.4_1721_10000_0.6757_0.7851_0.9113.png
                gene_name: SPATS2L
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 40 percent done.
SPESP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.860469e-02	ci left: 6.430738e-01	ci right 6.618374e-01	k: 6525	n:10000
Cons ci ratio: 5.576724e-02	ci left: 3.213802e-01	ci right 3.399186e-01	k: 3306	n:10000
KS ci ratio: 1.862176e-02	ci left: 8.081622e-01	ci right 8.234533e-01	k: 8159	n:10000
SPESP1   10000 perm   2 sec   (6187 perm/sec)   p_kst 8.159000e-01   p_cons 3.306000e-01   p_joint 6.525000e-01

Outputting figure to mutsig2_images.part000000000165/SPESP1.4_1061_10000_0.8159_0.3306_0.6525.png
                gene_name: SPESP1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 42 percent done.
SPIN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.936165e-02	ci left: 7.959800e-01	ci right 8.116426e-01	k: 8039	n:10000
Cons ci ratio: 3.793680e-02	ci left: 5.064518e-01	ci right 5.261387e-01	k: 5163	n:10000
KS ci ratio: 2.310239e-02	ci left: 7.335069e-01	ci right 7.507518e-01	k: 7422	n:10000
SPIN4   10000 perm   2 sec   (6635 perm/sec)   p_kst 7.422000e-01   p_cons 5.163000e-01   p_joint 8.039000e-01

Outputting figure to mutsig2_images.part000000000165/SPIN4.4_754_10000_0.7422_0.5163_0.8039.png
                gene_name: SPIN4
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 44 percent done.
SPANXN5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.684031e-02	ci left: 1.985040e-01	ci right 2.144674e-01	k: 2064	n:10000
Cons ci ratio: 2.563659e-02	ci left: 6.913143e-01	ci right 7.093688e-01	k: 7004	n:10000
KS ci ratio: 8.397822e-02	ci left: 1.713341e-01	ci right 1.864535e-01	k: 1788	n:10000
SPANXN5   10000 perm   1 sec   (7524 perm/sec)   p_kst 1.788000e-01   p_cons 7.004000e-01   p_joint 2.064000e-01

Outputting figure to mutsig2_images.part000000000165/SPANXN5.3_227_10000_0.1788_0.7004_0.2064.png
                gene_name: SPANXN5
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 47 percent done.
SPATA17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.668649e-02	ci left: 4.037247e-01	ci right 4.231258e-01	k: 4134	n:10000
Cons ci ratio: 6.463583e-02	ci left: 2.601291e-01	ci right 2.776057e-01	k: 2688	n:10000
KS ci ratio: 7.391724e-02	ci left: 2.113215e-01	ci right 2.276422e-01	k: 2194	n:10000
SPATA17   10000 perm   2 sec   (6515 perm/sec)   p_kst 2.194000e-01   p_cons 2.688000e-01   p_joint 4.134000e-01

Outputting figure to mutsig2_images.part000000000165/SPATA17.3_1126_10000_0.2194_0.2688_0.4134.png
                gene_name: SPATA17
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 49 percent done.
SPATA20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.004364e-02	ci left: 2.300756e-01	ci right 2.468770e-01	k: 2384	n:10000
Cons ci ratio: 3.494051e-02	ci left: 5.473990e-01	ci right 5.669676e-01	k: 5572	n:10000
KS ci ratio: 1.124773e-01	ci left: 1.021764e-01	ci right 1.144528e-01	k: 1082	n:10000
SPATA20   10000 perm   2 sec   (5909 perm/sec)   p_kst 1.082000e-01   p_cons 5.572000e-01   p_joint 2.384000e-01

Joint ci ratio: 5.101892e-02	ci left: 2.220518e-01	ci right 2.337274e-01	k: 4557	n:20000
Cons ci ratio: 2.493938e-02	ci left: 5.456767e-01	ci right 5.595080e-01	k: 11052	n:20000
KS ci ratio: 7.970010e-02	ci left: 1.035833e-01	ci right 1.122311e-01	k: 2157	n:20000
SPATA20   20000 perm   4 sec   (5290 perm/sec)   p_kst 1.078500e-01   p_cons 5.526000e-01   p_joint 2.278500e-01

Outputting figure to mutsig2_images.part000000000165/SPATA20.3_2477_20000_0.10785_0.5526_0.22785.png
                gene_name: SPATA20
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 51 percent done.
SPATA22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.642880e-02	ci left: 3.162190e-01	ci right 3.346828e-01	k: 3254	n:10000
Cons ci ratio: 1.475129e-02	ci left: 8.693806e-01	ci right 8.823995e-01	k: 8760	n:10000
KS ci ratio: 1.285258e-01	ci left: 7.960546e-02	ci right 9.063764e-02	k: 850	n:10000
SPATA22   10000 perm   2 sec   (6382 perm/sec)   p_kst 8.500000e-02   p_cons 8.760000e-01   p_joint 3.254000e-01

Joint ci ratio: 4.963128e-02	ci left: 2.318140e-01	ci right 2.436623e-01	k: 4754	n:20000
Cons ci ratio: 1.054935e-02	ci left: 8.688137e-01	ci right 8.780774e-01	k: 17470	n:20000
KS ci ratio: 9.174025e-02	ci left: 7.979973e-02	ci right 8.752182e-02	k: 1672	n:20000
SPATA22   20000 perm   4 sec   (5662 perm/sec)   p_kst 8.360000e-02   p_cons 8.735000e-01   p_joint 2.377000e-01

Outputting figure to mutsig2_images.part000000000165/SPATA22.3_1124_20000_0.0836_0.8735_0.2377.png
                gene_name: SPATA22
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.084 
        ci_ks_bounds_left: 0.080 
       ci_ks_bounds_right: 0.088 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 53 percent done.
SPEM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.362769e-02	ci left: 7.247173e-01	ci right 7.421466e-01	k: 7335	n:10000
KS ci ratio: 2.747163e-02	ci left: 6.612896e-01	ci right 6.798110e-01	k: 6706	n:10000
SPEM1   10000 perm   2 sec   (6463 perm/sec)   p_kst 6.706000e-01   p_cons 7.335000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000165/SPEM1.3_942_10000_0.6706_0.7335_1.png
                gene_name: SPEM1
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 56 percent done.
SPG20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.753709e-03	ci left: 9.830684e-01	ci right 9.878427e-01	k: 9856	n:10000
Cons ci ratio: 2.912367e-02	ci left: 6.348262e-01	ci right 6.536897e-01	k: 6443	n:10000
KS ci ratio: 2.240852e-02	ci left: 7.451322e-01	ci right 7.621198e-01	k: 7537	n:10000
SPG20   10000 perm   2 sec   (5870 perm/sec)   p_kst 7.537000e-01   p_cons 6.443000e-01   p_joint 9.856000e-01

Outputting figure to mutsig2_images.part000000000165/SPG20.3_2033_10000_0.7537_0.6443_0.9856.png
                gene_name: SPG20
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 58 percent done.
SPIC
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.894348e-02	ci left: 3.811202e-01	ci right 4.003435e-01	k: 3907	n:10000
Cons ci ratio: 2.022950e-02	ci left: 7.815789e-01	ci right 7.976520e-01	k: 7897	n:10000
KS ci ratio: 1.407264e-01	ci left: 6.691220e-02	ci right 7.713880e-02	k: 719	n:10000
SPIC   10000 perm   1 sec   (6798 perm/sec)   p_kst 7.190000e-02   p_cons 7.897000e-01   p_joint 3.907000e-01

Joint ci ratio: 3.698632e-02	ci left: 3.529451e-01	ci right 3.662957e-01	k: 7192	n:20000
Cons ci ratio: 1.426549e-02	ci left: 7.848940e-01	ci right 7.962214e-01	k: 15812	n:20000
KS ci ratio: 9.932497e-02	ci left: 6.865040e-02	ci right 7.587455e-02	k: 1444	n:20000
SPIC   20000 perm   3 sec   (6053 perm/sec)   p_kst 7.220000e-02   p_cons 7.906000e-01   p_joint 3.596000e-01

Outputting figure to mutsig2_images.part000000000165/SPIC.2_761_20000_0.0722_0.7906_0.3596.png
                gene_name: SPIC
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.076 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 60 percent done.
SPAG9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.813050e-02	ci left: 8.161888e-01	ci right 8.312222e-01	k: 8238	n:10000
KS ci ratio: 4.401905e-02	ci left: 4.324339e-01	ci right 4.519998e-01	k: 4422	n:10000
SPAG9   10000 perm   2 sec   (5555 perm/sec)   p_kst 4.422000e-01   p_cons 8.238000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000165/SPAG9.2_4086_10000_0.4422_0.8238_1.png
                gene_name: SPAG9
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
SPANXN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.951867e-02	ci left: 6.285922e-01	ci right 6.475273e-01	k: 6381	n:10000
KS ci ratio: 1.448894e-01	ci left: 6.323884e-02	ci right 7.321448e-02	k: 681	n:10000
SPANXN3   10000 perm   1 sec   (7148 perm/sec)   p_kst 6.810000e-02   p_cons 6.381000e-01   p_joint 1

Joint ci ratio: 1.784367e-02	ci left: 7.006375e-01	ci right 7.133023e-01	k: 14140	n:20000
Cons ci ratio: 2.079478e-02	ci left: 6.331521e-01	ci right 6.465072e-01	k: 12797	n:20000
KS ci ratio: 1.022936e-01	ci left: 6.489067e-02	ci right 7.193544e-02	k: 1367	n:20000
SPANXN3   20000 perm   3 sec   (6232 perm/sec)   p_kst 6.835000e-02   p_cons 6.398500e-01   p_joint 7.070000e-01

Joint ci ratio: 1.451904e-02	ci left: 7.032538e-01	ci right 7.135725e-01	k: 21253	n:30000
Cons ci ratio: 1.692697e-02	ci left: 6.358091e-01	ci right 6.466968e-01	k: 19238	n:30000
KS ci ratio: 8.423012e-02	ci left: 6.449025e-02	ci right 7.019389e-02	k: 2019	n:30000
SPANXN3   30000 perm   5 sec   (5891 perm/sec)   p_kst 6.730000e-02   p_cons 6.412667e-01   p_joint 7.084333e-01

Outputting figure to mutsig2_images.part000000000165/SPANXN3.2_434_30000_0.0673_0.64127_0.70843.png
                gene_name: SPANXN3
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.067 
        ci_ks_bounds_left: 0.064 
       ci_ks_bounds_right: 0.070 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.71 

Current progress: 64 percent done.
SPARCL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.019312e-02	ci left: 6.180386e-01	ci right 6.370870e-01	k: 6276	n:10000
Cons ci ratio: 4.658079e-02	ci left: 4.048206e-01	ci right 4.242292e-01	k: 4145	n:10000
KS ci ratio: 7.138054e-02	ci left: 2.233609e-01	ci right 2.399957e-01	k: 2316	n:10000
SPARCL1   10000 perm   2 sec   (6086 perm/sec)   p_kst 2.316000e-01   p_cons 4.145000e-01   p_joint 6.276000e-01

Outputting figure to mutsig2_images.part000000000165/SPARCL1.2_2035_10000_0.2316_0.4145_0.6276.png
                gene_name: SPARCL1
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 67 percent done.
SPATA19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.916568e-02	ci left: 1.890467e-01	ci right 2.047302e-01	k: 1968	n:10000
Cons ci ratio: 8.271402e-02	ci left: 1.757597e-01	ci right 1.910252e-01	k: 1833	n:10000
KS ci ratio: 7.443885e-02	ci left: 2.089543e-01	ci right 2.252108e-01	k: 2170	n:10000
SPATA19   10000 perm   1 sec   (7195 perm/sec)   p_kst 2.170000e-01   p_cons 1.833000e-01   p_joint 1.968000e-01

Outputting figure to mutsig2_images.part000000000165/SPATA19.2_528_10000_0.217_0.1833_0.1968.png
                gene_name: SPATA19
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 69 percent done.
SPATA21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.864034e-02	ci left: 8.078575e-01	ci right 8.231582e-01	k: 8156	n:10000
KS ci ratio: 4.496832e-02	ci left: 4.219631e-01	ci right 4.414767e-01	k: 4317	n:10000
SPATA21   10000 perm   2 sec   (6517 perm/sec)   p_kst 4.317000e-01   p_cons 8.156000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000165/SPATA21.2_1454_10000_0.4317_0.8156_1.png
                gene_name: SPATA21
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
SPATA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.183862e-01	ci left: 9.292171e-02	ci right 1.047132e-01	k: 987	n:10000
Cons ci ratio: 3.189665e-02	ci left: 5.919262e-01	ci right 6.112146e-01	k: 6016	n:10000
KS ci ratio: 2.743868e-01	ci left: 1.725330e-02	ci right 2.283124e-02	k: 199	n:10000
SPATA6   10000 perm   1 sec   (6713 perm/sec)   p_kst 1.990000e-02   p_cons 6.016000e-01   p_joint 9.870000e-02

Joint ci ratio: 8.399665e-02	ci left: 9.406032e-02	ci right 1.023569e-01	k: 1963	n:20000
Cons ci ratio: 2.225095e-02	ci left: 6.012941e-01	ci right 6.148745e-01	k: 12162	n:20000
KS ci ratio: 1.997038e-01	ci left: 1.701043e-02	ci right 2.083125e-02	k: 377	n:20000
SPATA6   20000 perm   3 sec   (5945 perm/sec)   p_kst 1.885000e-02   p_cons 6.081000e-01   p_joint 9.815000e-02

Joint ci ratio: 6.857052e-02	ci left: 9.485493e-02	ci right 1.016231e-01	k: 2946	n:30000
Cons ci ratio: 1.826994e-02	ci left: 5.998760e-01	ci right 6.109703e-01	k: 18163	n:30000
KS ci ratio: 1.649973e-01	ci left: 1.694132e-02	ci right 2.001961e-02	k: 553	n:30000
SPATA6   30000 perm   5 sec   (5650 perm/sec)   p_kst 1.843333e-02   p_cons 6.054333e-01   p_joint 9.820000e-02

Joint ci ratio: 5.944554e-02	ci left: 9.512779e-02	ci right 1.009807e-01	k: 3921	n:40000
Cons ci ratio: 1.592384e-02	ci left: 5.975591e-01	ci right 6.071760e-01	k: 24095	n:40000
KS ci ratio: 1.402710e-01	ci left: 1.780527e-02	ci right 2.051517e-02	k: 765	n:40000
SPATA6   40000 perm   7 sec   (5462 perm/sec)   p_kst 1.912500e-02   p_cons 6.023750e-01   p_joint 9.802500e-02

Joint ci ratio: 5.308881e-02	ci left: 9.570379e-02	ci right 1.009429e-01	k: 4915	n:50000
Cons ci ratio: 1.425573e-02	ci left: 5.976336e-01	ci right 6.062345e-01	k: 30097	n:50000
KS ci ratio: 1.239854e-01	ci left: 1.838351e-02	ci right 2.083271e-02	k: 979	n:50000
SPATA6   50000 perm   9 sec   (5308 perm/sec)   p_kst 1.958000e-02   p_cons 6.019400e-01   p_joint 9.830000e-02

Joint ci ratio: 4.820632e-02	ci left: 9.686866e-02	ci right 1.016702e-01	k: 5955	n:60000
Cons ci ratio: 1.301296e-02	ci left: 5.980368e-01	ci right 6.058867e-01	k: 36118	n:60000
KS ci ratio: 1.127436e-01	ci left: 1.863540e-02	ci right 2.087805e-02	k: 1184	n:60000
SPATA6   60000 perm   12 sec   (5177 perm/sec)   p_kst 1.973333e-02   p_cons 6.019667e-01   p_joint 9.925000e-02

Joint ci ratio: 4.466135e-02	ci left: 9.692432e-02	ci right 1.013661e-01	k: 6939	n:70000
Cons ci ratio: 1.204326e-02	ci left: 5.985057e-01	ci right 6.057716e-01	k: 42150	n:70000
KS ci ratio: 1.050215e-01	ci left: 1.848848e-02	ci right 2.055162e-02	k: 1365	n:70000
SPATA6   70000 perm   14 sec   (5062 perm/sec)   p_kst 1.950000e-02   p_cons 6.021429e-01   p_joint 9.912857e-02

Joint ci ratio: 4.198116e-02	ci left: 9.620814e-02	ci right 1.003460e-01	k: 7861	n:80000
Cons ci ratio: 1.128823e-02	ci left: 5.977720e-01	ci right 6.045706e-01	k: 48094	n:80000
KS ci ratio: 9.882603e-02	ci left: 1.833347e-02	ci right 2.025161e-02	k: 1542	n:80000
SPATA6   80000 perm   16 sec   (4950 perm/sec)   p_kst 1.927500e-02   p_cons 6.011750e-01   p_joint 9.826250e-02

Outputting figure to mutsig2_images.part000000000165/SPATA6.2_1519_80000_0.019275_0.60118_0.098263.png
                gene_name: SPATA6
               theta_stop: 0.099 
                    nperm: 80000 
                     p_ks: 0.019 
        ci_ks_bounds_left: 0.018 
       ci_ks_bounds_right: 0.020 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.098 
     ci_joint_bounds_left: 0.096 
    ci_joint_bounds_right: 0.10 

Current progress: 73 percent done.
SPATC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.886859e-02	ci left: 2.362004e-01	ci right 2.531486e-01	k: 2446	n:10000
Cons ci ratio: 7.979698e-02	ci left: 1.865851e-01	ci right 2.021934e-01	k: 1943	n:10000
KS ci ratio: 1.399478e-02	ci left: 8.806319e-01	ci right 8.931418e-01	k: 8870	n:10000
SPATC1   10000 perm   2 sec   (6368 perm/sec)   p_kst 8.870000e-01   p_cons 1.943000e-01   p_joint 2.446000e-01

Outputting figure to mutsig2_images.part000000000165/SPATC1.2_1796_10000_0.887_0.1943_0.2446.png
                gene_name: SPATC1
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 76 percent done.
SPCS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.785336e-02	ci left: 5.075522e-01	ci right 5.272376e-01	k: 5174	n:10000
KS ci ratio: 2.923811e-02	ci left: 6.330162e-01	ci right 6.519008e-01	k: 6425	n:10000
SPCS3   10000 perm   1 sec   (7116 perm/sec)   p_kst 6.425000e-01   p_cons 5.174000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000165/SPCS3.2_563_10000_0.6425_0.5174_1.png
                gene_name: SPCS3
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
SPDEF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.474977e-02	ci left: 5.501045e-01	ci right 5.696606e-01	k: 5599	n:10000
Cons ci ratio: 4.269655e-02	ci left: 4.474996e-01	ci right 4.671253e-01	k: 4573	n:10000
KS ci ratio: 4.426972e-02	ci left: 4.296413e-01	ci right 4.491941e-01	k: 4394	n:10000
SPDEF   10000 perm   1 sec   (6803 perm/sec)   p_kst 4.394000e-01   p_cons 4.573000e-01   p_joint 5.599000e-01

Outputting figure to mutsig2_images.part000000000165/SPDEF.2_1028_10000_0.4394_0.4573_0.5599.png
                gene_name: SPDEF
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 80 percent done.
SPDYC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.191911e-01	ci left: 9.175384e-02	ci right 1.034818e-01	k: 975	n:10000
Cons ci ratio: 1.346742e-01	ci left: 7.281740e-02	ci right 8.342992e-02	k: 780	n:10000
KS ci ratio: 5.554127e-02	ci left: 3.231670e-01	ci right 3.417307e-01	k: 3324	n:10000
SPDYC   10000 perm   1 sec   (6897 perm/sec)   p_kst 3.324000e-01   p_cons 7.800000e-02   p_joint 9.750000e-02

Joint ci ratio: 9.422057e-02	ci left: 7.588504e-02	ci right 8.343770e-02	k: 1592	n:20000
Cons ci ratio: 9.765953e-02	ci left: 7.089790e-02	ci right 7.822636e-02	k: 1490	n:20000
KS ci ratio: 4.013867e-02	ci left: 3.163711e-01	ci right 3.293804e-01	k: 6457	n:20000
SPDYC   20000 perm   3 sec   (6089 perm/sec)   p_kst 3.228500e-01   p_cons 7.450000e-02   p_joint 7.960000e-02

Outputting figure to mutsig2_images.part000000000165/SPDYC.2_909_20000_0.32285_0.0745_0.0796.png
                gene_name: SPDYC
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.074 
      ci_cons_bounds_left: 0.071 
     ci_cons_bounds_right: 0.078 
                  p_joint: 0.080 
     ci_joint_bounds_left: 0.076 
    ci_joint_bounds_right: 0.083 

Current progress: 82 percent done.
SPDYE3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.230402e-02	ci left: 5.858039e-01	ci right 6.051404e-01	k: 5955	n:10000
Cons ci ratio: 3.208993e-02	ci left: 5.890154e-01	ci right 6.083271e-01	k: 5987	n:10000
KS ci ratio: 7.231530e-02	ci left: 2.188203e-01	ci right 2.353390e-01	k: 2270	n:10000
SPDYE3   10000 perm   2 sec   (6416 perm/sec)   p_kst 2.270000e-01   p_cons 5.987000e-01   p_joint 5.955000e-01

Outputting figure to mutsig2_images.part000000000165/SPDYE3.2_1690_10000_0.227_0.5987_0.5955.png
                gene_name: SPDYE3
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 84 percent done.
SPEF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.363244e-03	ci left: 9.414924e-01	ci right 9.504455e-01	k: 9461	n:10000
KS ci ratio: 2.303600e-02	ci left: 7.346186e-01	ci right 7.518395e-01	k: 7433	n:10000
SPEF1   10000 perm   1 sec   (7245 perm/sec)   p_kst 7.433000e-01   p_cons 9.461000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000165/SPEF1.2_739_10000_0.7433_0.9461_1.png
                gene_name: SPEF1
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
SPERT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.199738e-02	ci left: 2.766613e-01	ci right 2.944638e-01	k: 2855	n:10000
Cons ci ratio: 1.050588e-01	ci left: 1.157438e-01	ci right 1.286772e-01	k: 1221	n:10000
KS ci ratio: 1.157215e-02	ci left: 9.144065e-01	ci right 9.251474e-01	k: 9199	n:10000
SPERT   10000 perm   1 sec   (6814 perm/sec)   p_kst 9.199000e-01   p_cons 1.221000e-01   p_joint 2.855000e-01

Joint ci ratio: 5.030464e-02	ci left: 2.270067e-01	ci right 2.387711e-01	k: 4657	n:20000
Cons ci ratio: 7.460246e-02	ci left: 1.167565e-01	ci right 1.258540e-01	k: 2425	n:20000
KS ci ratio: 8.175484e-03	ci left: 9.161538e-01	ci right 9.237236e-01	k: 18400	n:20000
SPERT   20000 perm   3 sec   (6025 perm/sec)   p_kst 9.200000e-01   p_cons 1.212500e-01   p_joint 2.328500e-01

Outputting figure to mutsig2_images.part000000000165/SPERT.2_1359_20000_0.92_0.12125_0.23285.png
                gene_name: SPERT
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 89 percent done.
SPIB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.140657e-02	ci left: 5.993553e-01	ci right 6.185812e-01	k: 6090	n:10000
Cons ci ratio: 2.840317e-02	ci left: 6.462931e-01	ci right 6.650161e-01	k: 6557	n:10000
KS ci ratio: 1.266640e-01	ci left: 8.183830e-02	ci right 9.300341e-02	k: 873	n:10000
SPIB   10000 perm   1 sec   (6932 perm/sec)   p_kst 8.730000e-02   p_cons 6.557000e-01   p_joint 6.090000e-01

Joint ci ratio: 2.942939e-02	ci left: 4.631127e-01	ci right 4.769960e-01	k: 9401	n:20000
Cons ci ratio: 1.992944e-02	ci left: 6.525833e-01	ci right 6.657704e-01	k: 13184	n:20000
KS ci ratio: 8.851651e-02	ci left: 8.533364e-02	ci right 9.328623e-02	k: 1785	n:20000
SPIB   20000 perm   3 sec   (6103 perm/sec)   p_kst 8.925000e-02   p_cons 6.592000e-01   p_joint 4.700500e-01

Outputting figure to mutsig2_images.part000000000165/SPIB.2_813_20000_0.08925_0.6592_0.47005.png
                gene_name: SPIB
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.089 
        ci_ks_bounds_left: 0.085 
       ci_ks_bounds_right: 0.093 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 91 percent done.
SPINLW1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 93 percent done.
SPINT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.596919e-02	ci left: 8.506986e-01	ci right 8.644924e-01	k: 8577	n:10000
KS ci ratio: 4.139542e-02	ci left: 4.628739e-01	ci right 4.825420e-01	k: 4727	n:10000
SPINT1   10000 perm   2 sec   (6452 perm/sec)   p_kst 4.727000e-01   p_cons 8.577000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000165/SPINT1.2_1630_10000_0.4727_0.8577_1.png
                gene_name: SPINT1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
SPINT4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.925109e-02	ci left: 7.978066e-01	ci right 8.134149e-01	k: 8057	n:10000
Cons ci ratio: 1.902339e-02	ci left: 8.015621e-01	ci right 8.170573e-01	k: 8094	n:10000
KS ci ratio: 3.371796e-02	ci left: 5.649396e-01	ci right 5.844169e-01	k: 5747	n:10000
SPINT4   10000 perm   1 sec   (7163 perm/sec)   p_kst 5.747000e-01   p_cons 8.094000e-01   p_joint 8.057000e-01

Outputting figure to mutsig2_images.part000000000165/SPINT4.2_312_10000_0.5747_0.8094_0.8057.png
                gene_name: SPINT4
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 98 percent done.
SPIRE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.454578e-02	ci left: 5.530107e-01	ci right 5.725527e-01	k: 5628	n:10000
KS ci ratio: 2.632864e-02	ci left: 6.799240e-01	ci right 6.981658e-01	k: 6891	n:10000
SPIRE1   10000 perm   2 sec   (6075 perm/sec)   p_kst 6.891000e-01   p_cons 5.628000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000165/SPIRE1.2_2339_10000_0.6891_0.5628_1.png
                gene_name: SPIRE1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000165
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 165 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1542>
Subject: Job 8004575: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1542>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000166> was used as the working directory.
Started at Sun Nov 11 15:20:15 2012
Results reported at Sun Nov 11 16:04:00 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000166.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000166.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 166  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000166.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   2988.35 sec.
    Max Memory :      4812 MB
    Max Swap   :      7172 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
166
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 166
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 166: processing genes 14929 - 15018
Calculating significance of each gene.
Using projection method.
14929	SPNS1	4.266259e-01
14930	SPNS2	1
14931	SPNS3	8.280586e-01
14932	SPO11	1
14933	SPOCD1	9.217287e-01
14934	SPOCK1	8.087980e-01
14935	SPOCK2	6.848467e-01
14936	SPOCK3	5.569284e-01
14937	SPON1	4.436702e-01
14938	SPON2	1
14939	SPOP	5.458060e-01
14940	SPOPL	5.812442e-03
14941	SPP1	6.971045e-01
14942	SPP2	1.536278e-01
14943	SPPL2A	1
14944	SPPL2B	1
14945	SPPL3	6.365810e-01
14946	SPR	1
14947	SPRED1	4.435162e-01
14948	SPRED2	6.719067e-01
14949	SPRED3	1.564950e-02
14950	SPRR1A	1
14951	SPRR1B	1
14952	SPRR2A	1
14953	SPRR2B	1
14954	SPRR2D	1
14955	SPRR2E	1
14956	SPRR2F	1
14957	SPRR2G	1
14958	SPRR3	1
14959	SPRR4	1
14960	SPRY1	1
14961	SPRY2	5.266812e-01
14962	SPRY3	1.900046e-01
14963	SPRY4	1
14964	SPRYD3	4.199376e-01
14965	SPRYD4	1
14966	SPRYD5	1
14967	SPSB1	6.751180e-01
14968	SPSB2	1
14969	SPSB3	7.839170e-01
14970	SPSB4	1
14971	SPTA1	1
14972	SPTAN1	1
14973	SPTB	9.995793e-01
14974	SPTBN1	9.999324e-01
14975	SPTBN2	6.398813e-01
14976	SPTBN4	9.979495e-01
14977	SPTBN5	8.345532e-01
14978	SPTLC1	7.101571e-01
14979	SPTLC2	3.379065e-01
14980	SPTLC3	9.033864e-01
14981	SPTY2D1	6.348473e-01
14982	SPZ1	8.163226e-01
14983	SQLE	4.135282e-01
14984	SQRDL	1
14985	SQSTM1	7.396050e-01
14986	SR140	3.615051e-01
14987	SRA1	1
14988	SRBD1	1
14989	SRC	1
14990	SRCAP	9.979332e-01
14991	SRCIN1	7.624973e-01
14992	SRCRB4D	2.424322e-01
14993	SRD5A1	4.805892e-01
14994	SRD5A2	2.272168e-01
14995	SRD5A3	2.056432e-01
14996	SREBF1	8.709642e-01
14997	SREBF2	6.923968e-01
14998	SRF	5.523281e-01
14999	SRFBP1	2.680938e-01
15000/18094 15000	SRGAP1	3.616751e-01
15001	SRGAP2	6.958433e-01
15002	SRGAP3	4.334215e-01
15003	SRGN	4.858017e-01
15004	SRI	1
15005	SRL	5.239770e-01
15006	SRM	1
15007	SRMS	1
15008	SRP14	1
15009	SRP19	1
15010	SRP54	7.956910e-01
15011	SRP68	1
15012	SRP72	1
15013	SRP9	1
15014	SRPK1	4.221074e-01
15015	SRPK2	1
15016	SRPK3	1
15017	SRPR	6.077789e-01
15018	SRPRB	6.970006e-01
Done

Running MutSig 2:
Scatter job 166: processing genes 14929 - 15018
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SPTA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.316274e-02	ci left: 7.324964e-01	ci right 7.497629e-01	k: 7412	n:10000
Cons ci ratio: 2.756493e-02	ci left: 6.597794e-01	ci right 6.783220e-01	k: 6691	n:10000
KS ci ratio: 3.276867e-02	ci left: 5.788806e-01	ci right 5.982678e-01	k: 5886	n:10000
SPTA1   10000 perm   4 sec   (2224 perm/sec)   p_kst 5.886000e-01   p_cons 6.691000e-01   p_joint 7.412000e-01

Outputting figure to mutsig2_images.part000000000166/SPTA1.50_7468_10000_0.5886_0.6691_0.7412.png
                gene_name: SPTA1
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 2 percent done.
SPTBN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.754621e-02	ci left: 1.596393e-01	ci right 1.743552e-01	k: 1669	n:10000
Cons ci ratio: 4.570908e-02	ci left: 4.139884e-01	ci right 4.334561e-01	k: 4237	n:10000
KS ci ratio: 1.149320e-01	ci left: 9.818038e-02	ci right 1.102513e-01	k: 1041	n:10000
SPTBN4   10000 perm   3 sec   (3011 perm/sec)   p_kst 1.041000e-01   p_cons 4.237000e-01   p_joint 1.669000e-01

Joint ci ratio: 5.844943e-02	ci left: 1.782062e-01	ci right 1.889859e-01	k: 3671	n:20000
Cons ci ratio: 3.386024e-02	ci left: 3.943969e-01	ci right 4.080318e-01	k: 8024	n:20000
KS ci ratio: 8.237831e-02	ci left: 9.749509e-02	ci right 1.059211e-01	k: 2033	n:20000
SPTBN4   20000 perm   7 sec   (2786 perm/sec)   p_kst 1.016500e-01   p_cons 4.012000e-01   p_joint 1.835500e-01

Outputting figure to mutsig2_images.part000000000166/SPTBN4.13_7929_20000_0.10165_0.4012_0.18355.png
                gene_name: SPTBN4
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.097 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 5 percent done.
SRCAP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.142864e-02	ci left: 4.624745e-01	ci right 4.821416e-01	k: 4723	n:10000
KS ci ratio: 1.566060e-02	ci left: 8.554928e-01	ci right 8.690954e-01	k: 8624	n:10000
SRCAP   10000 perm   4 sec   (2775 perm/sec)   p_kst 8.624000e-01   p_cons 4.723000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000166/SRCAP.12_9821_10000_0.8624_0.4723_1.png
                gene_name: SRCAP
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 7 percent done.
SPRYD5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.313660e-01	ci left: 1.151417e-02	ci right 1.617538e-02	k: 137	n:10000
Cons ci ratio: 2.759606e-02	ci left: 6.592760e-01	ci right 6.778257e-01	k: 6686	n:10000
KS ci ratio: 7.397357e-01	ci left: 1.780048e-03	ci right 3.925945e-03	k: 27	n:10000
SPRYD5   10000 perm   2 sec   (5448 perm/sec)   p_kst 2.700000e-03   p_cons 6.686000e-01   p_joint 1.370000e-02

Joint ci ratio: 1.718684e-01	ci left: 2.316787e-02	ci right 2.757159e-02	k: 506	n:20000
Cons ci ratio: 1.957796e-02	ci left: 6.605702e-01	ci right 6.736812e-01	k: 13343	n:20000
KS ci ratio: 5.651098e-01	ci left: 1.727187e-03	ci right 3.123791e-03	k: 47	n:20000
SPRYD5   20000 perm   4 sec   (4839 perm/sec)   p_kst 2.350000e-03   p_cons 6.671500e-01   p_joint 2.530000e-02

Joint ci ratio: 1.829841e-01	ci left: 1.368681e-02	ci right 1.647492e-02	k: 451	n:30000
Cons ci ratio: 1.596335e-02	ci left: 6.624040e-01	ci right 6.730968e-01	k: 20033	n:30000
KS ci ratio: 5.055551e-01	ci left: 1.497445e-03	ci right 2.536133e-03	k: 59	n:30000
SPRYD5   30000 perm   7 sec   (4602 perm/sec)   p_kst 1.966667e-03   p_cons 6.677667e-01   p_joint 1.503333e-02

Joint ci ratio: 1.993389e-01	ci left: 8.620141e-03	ci right 1.055206e-02	k: 382	n:40000
Cons ci ratio: 1.384864e-02	ci left: 6.623570e-01	ci right 6.716188e-01	k: 26680	n:40000
KS ci ratio: 4.351089e-01	ci left: 1.586184e-03	ci right 2.488564e-03	k: 80	n:40000
SPRYD5   40000 perm   9 sec   (4451 perm/sec)   p_kst 2.000000e-03   p_cons 6.670000e-01   p_joint 9.550000e-03

Joint ci ratio: 1.434243e-01	ci left: 1.366336e-02	ci right 1.579353e-02	k: 735	n:50000
Cons ci ratio: 1.236769e-02	ci left: 6.635315e-01	ci right 6.718090e-01	k: 33384	n:50000
KS ci ratio: 3.858472e-01	ci left: 1.663673e-03	ci right 2.475880e-03	k: 102	n:50000
SPRYD5   50000 perm   12 sec   (4322 perm/sec)   p_kst 2.040000e-03   p_cons 6.676800e-01   p_joint 1.470000e-02

Joint ci ratio: 1.408203e-01	ci left: 1.185149e-02	ci right 1.366277e-02	k: 764	n:60000
Cons ci ratio: 1.127903e-02	ci left: 6.643324e-01	ci right 6.718846e-01	k: 40087	n:60000
KS ci ratio: 3.434312e-01	ci left: 1.795318e-03	ci right 2.554126e-03	k: 129	n:60000
SPRYD5   60000 perm   14 sec   (4226 perm/sec)   p_kst 2.150000e-03   p_cons 6.681167e-01   p_joint 1.273333e-02

Joint ci ratio: 1.375371e-01	ci left: 1.068192e-02	ci right 1.227325e-02	k: 802	n:70000
Cons ci ratio: 1.044747e-02	ci left: 6.643970e-01	ci right 6.713890e-01	k: 46753	n:70000
KS ci ratio: 3.229742e-01	ci left: 1.761396e-03	ci right 2.452347e-03	k: 146	n:70000
SPRYD5   70000 perm   17 sec   (4134 perm/sec)   p_kst 2.085714e-03   p_cons 6.679000e-01   p_joint 1.145714e-02

Joint ci ratio: 1.493521e-01	ci left: 7.899547e-03	ci right 9.186475e-03	k: 682	n:80000
Cons ci ratio: 9.776031e-03	ci left: 6.644738e-01	ci right 6.710141e-01	k: 53420	n:80000
KS ci ratio: 3.030200e-01	ci left: 1.771604e-03	ci right 2.415360e-03	k: 166	n:80000
SPRYD5   80000 perm   20 sec   (4048 perm/sec)   p_kst 2.075000e-03   p_cons 6.677500e-01   p_joint 8.525000e-03

Joint ci ratio: 1.458100e-01	ci left: 7.385503e-03	ci right 8.557655e-03	k: 716	n:90000
Cons ci ratio: 9.219594e-03	ci left: 6.645337e-01	ci right 6.706999e-01	k: 60086	n:90000
KS ci ratio: 2.863592e-01	ci left: 1.780568e-03	ci right 2.385578e-03	k: 186	n:90000
SPRYD5   90000 perm   23 sec   (3973 perm/sec)   p_kst 2.066667e-03   p_cons 6.676222e-01   p_joint 7.955556e-03

Joint ci ratio: 1.412771e-01	ci left: 7.099999e-03	ci right 8.188851e-03	k: 763	n:100000
Cons ci ratio: 8.755199e-03	ci left: 6.642496e-01	ci right 6.701007e-01	k: 66718	n:100000
KS ci ratio: 2.762161e-01	ci left: 1.732632e-03	ci right 2.296878e-03	k: 200	n:100000
SPRYD5   100000 perm   26 sec   (3903 perm/sec)   p_kst 2.000000e-03   p_cons 6.671800e-01   p_joint 7.630000e-03

Joint ci ratio: 1.368860e-01	ci left: 6.893223e-03	ci right 7.914825e-03	k: 813	n:110000
Cons ci ratio: 8.344821e-03	ci left: 6.645431e-01	ci right 6.701208e-01	k: 73407	n:110000
KS ci ratio: 2.604853e-01	ci left: 1.787122e-03	ci right 2.330578e-03	k: 225	n:110000
SPRYD5   110000 perm   29 sec   (3840 perm/sec)   p_kst 2.045455e-03   p_cons 6.673364e-01   p_joint 7.390909e-03

Joint ci ratio: 1.328022e-01	ci left: 6.729413e-03	ci right 7.694632e-03	k: 864	n:120000
Cons ci ratio: 7.421889e-03	ci left: 6.966130e-01	ci right 7.018107e-01	k: 83906	n:120000
KS ci ratio: 2.476632e-01	ci left: 1.825471e-03	ci right 2.349059e-03	k: 249	n:120000
SPRYD5   120000 perm   32 sec   (3774 perm/sec)   p_kst 2.075000e-03   p_cons 6.992167e-01   p_joint 7.200000e-03

Joint ci ratio: 1.391310e-01	ci left: 5.646803e-03	ci right 6.498532e-03	k: 788	n:130000
Cons ci ratio: 7.135048e-03	ci left: 6.964597e-01	ci right 7.014545e-01	k: 90865	n:130000
KS ci ratio: 2.357048e-01	ci left: 1.872950e-03	ci right 2.380437e-03	k: 275	n:130000
SPRYD5   130000 perm   35 sec   (3712 perm/sec)   p_kst 2.115385e-03   p_cons 6.989615e-01   p_joint 6.061538e-03

Joint ci ratio: 1.227165e-01	ci left: 6.791483e-03	ci right 7.686251e-03	k: 1012	n:140000
Cons ci ratio: 7.149517e-03	ci left: 6.798181e-01	ci right 6.847030e-01	k: 95517	n:140000
KS ci ratio: 2.257012e-01	ci left: 1.907427e-03	ci right 2.399271e-03	k: 300	n:140000
SPRYD5   140000 perm   38 sec   (3644 perm/sec)   p_kst 2.142857e-03   p_cons 6.822643e-01   p_joint 7.228571e-03

Joint ci ratio: 1.192971e-01	ci left: 6.720131e-03	ci right 7.579085e-03	k: 1071	n:150000
Cons ci ratio: 6.904505e-03	ci left: 6.800639e-01	ci right 6.847823e-01	k: 102364	n:150000
KS ci ratio: 2.165394e-01	ci left: 1.944006e-03	ci right 2.422230e-03	k: 326	n:150000
SPRYD5   150000 perm   42 sec   (3589 perm/sec)   p_kst 2.173333e-03   p_cons 6.824267e-01   p_joint 7.140000e-03

Joint ci ratio: 1.202879e-01	ci left: 6.196955e-03	ci right 6.996082e-03	k: 1054	n:160000
Cons ci ratio: 6.692420e-03	ci left: 6.796741e-01	ci right 6.842443e-01	k: 109114	n:160000
KS ci ratio: 2.114325e-01	ci left: 1.917144e-03	ci right 2.376195e-03	k: 342	n:160000
SPRYD5   160000 perm   45 sec   (3534 perm/sec)   p_kst 2.137500e-03   p_cons 6.819625e-01   p_joint 6.587500e-03

Joint ci ratio: 1.179711e-01	ci left: 6.072102e-03	ci right 6.838993e-03	k: 1096	n:170000
Cons ci ratio: 6.492042e-03	ci left: 6.797802e-01	ci right 6.842136e-01	k: 115940	n:170000
KS ci ratio: 2.038449e-01	ci left: 1.949365e-03	ci right 2.397295e-03	k: 368	n:170000
SPRYD5   170000 perm   49 sec   (3479 perm/sec)   p_kst 2.164706e-03   p_cons 6.820000e-01   p_joint 6.447059e-03

Joint ci ratio: 1.169248e-01	ci left: 5.842569e-03	ci right 6.573472e-03	k: 1116	n:180000
Cons ci ratio: 6.527019e-03	ci left: 6.649120e-01	ci right 6.692716e-01	k: 120077	n:180000
KS ci ratio: 1.965215e-01	ci left: 1.988832e-03	ci right 2.427448e-03	k: 396	n:180000
SPRYD5   180000 perm   53 sec   (3425 perm/sec)   p_kst 2.200000e-03   p_cons 6.670944e-01   p_joint 6.200000e-03

Joint ci ratio: 1.149425e-01	ci left: 5.734357e-03	ci right 6.438735e-03	k: 1155	n:190000
Cons ci ratio: 6.348791e-03	ci left: 6.652605e-01	ci right 6.695028e-01	k: 126803	n:190000
KS ci ratio: 1.908368e-01	ci left: 2.004349e-03	ci right 2.432118e-03	k: 420	n:190000
SPRYD5   190000 perm   56 sec   (3375 perm/sec)   p_kst 2.210526e-03   p_cons 6.673842e-01   p_joint 6.078947e-03

Joint ci ratio: 1.121176e-01	ci left: 5.734262e-03	ci right 6.420172e-03	k: 1214	n:200000
Cons ci ratio: 6.187747e-03	ci left: 6.653352e-01	ci right 6.694699e-01	k: 133481	n:200000
KS ci ratio: 1.856185e-01	ci left: 2.018479e-03	ci right 2.436158e-03	k: 444	n:200000
SPRYD5   200000 perm   60 sec   (3326 perm/sec)   p_kst 2.220000e-03   p_cons 6.674050e-01   p_joint 6.070000e-03

Joint ci ratio: 1.115810e-01	ci left: 5.516712e-03	ci right 6.173232e-03	k: 1226	n:210000
Cons ci ratio: 6.041672e-03	ci left: 6.651609e-01	ci right 6.691964e-01	k: 140108	n:210000
KS ci ratio: 1.811937e-01	ci left: 2.022314e-03	ci right 2.429716e-03	k: 466	n:210000
SPRYD5   210000 perm   64 sec   (3280 perm/sec)   p_kst 2.219048e-03   p_cons 6.671810e-01   p_joint 5.838095e-03

Joint ci ratio: 1.140033e-01	ci left: 5.040602e-03	ci right 5.654359e-03	k: 1175	n:220000
Cons ci ratio: 5.906137e-03	ci left: 6.649534e-01	ci right 6.688968e-01	k: 146724	n:220000
KS ci ratio: 1.768898e-01	ci left: 2.030252e-03	ci right 2.428499e-03	k: 489	n:220000
SPRYD5   220000 perm   68 sec   (3234 perm/sec)   p_kst 2.222727e-03   p_cons 6.669273e-01   p_joint 5.340909e-03

Joint ci ratio: 1.024414e-01	ci left: 6.001888e-03	ci right 6.654125e-03	k: 1454	n:230000
Cons ci ratio: 5.778085e-03	ci left: 6.648607e-01	ci right 6.687177e-01	k: 153362	n:230000
KS ci ratio: 1.720405e-01	ci left: 2.058407e-03	ci right 2.449958e-03	k: 517	n:230000
SPRYD5   230000 perm   72 sec   (3188 perm/sec)   p_kst 2.247826e-03   p_cons 6.667913e-01   p_joint 6.321739e-03

Joint ci ratio: 1.016844e-01	ci left: 5.841112e-03	ci right 6.470905e-03	k: 1476	n:240000
Cons ci ratio: 5.656265e-03	ci left: 6.649143e-01	ci right 6.686900e-01	k: 160033	n:240000
KS ci ratio: 1.645751e-01	ci left: 2.164228e-03	ci right 2.556278e-03	k: 565	n:240000
SPRYD5   240000 perm   76 sec   (3146 perm/sec)   p_kst 2.354167e-03   p_cons 6.668042e-01   p_joint 6.150000e-03

Joint ci ratio: 9.281800e-02	ci left: 6.755061e-03	ci right 7.416444e-03	k: 1770	n:250000
Cons ci ratio: 5.542437e-03	ci left: 6.649163e-01	ci right 6.686158e-01	k: 166692	n:250000
KS ci ratio: 1.607838e-01	ci left: 2.181264e-03	ci right 2.566418e-03	k: 592	n:250000
SPRYD5   250000 perm   81 sec   (3105 perm/sec)   p_kst 2.368000e-03   p_cons 6.667680e-01   p_joint 7.080000e-03

Joint ci ratio: 9.241136e-02	ci left: 6.555333e-03	ci right 7.194196e-03	k: 1786	n:260000
Cons ci ratio: 5.434510e-03	ci left: 6.649767e-01	ci right 6.686042e-01	k: 173366	n:260000
KS ci ratio: 1.582697e-01	ci left: 2.167528e-03	ci right 2.543703e-03	k: 611	n:260000
SPRYD5   260000 perm   85 sec   (3064 perm/sec)   p_kst 2.350000e-03   p_cons 6.667923e-01   p_joint 6.869231e-03

Joint ci ratio: 9.369844e-02	ci left: 6.138840e-03	ci right 6.745901e-03	k: 1738	n:270000
Cons ci ratio: 5.335408e-03	ci left: 6.648033e-01	ci right 6.683635e-01	k: 179978	n:270000
KS ci ratio: 1.557463e-01	ci left: 2.158412e-03	ci right 2.526475e-03	k: 631	n:270000
SPRYD5   270000 perm   89 sec   (3025 perm/sec)   p_kst 2.337037e-03   p_cons 6.665852e-01   p_joint 6.437037e-03

Joint ci ratio: 9.319834e-02	ci left: 5.985845e-03	ci right 6.574444e-03	k: 1757	n:280000
Cons ci ratio: 5.239681e-03	ci left: 6.648003e-01	ci right 6.682963e-01	k: 186634	n:280000
KS ci ratio: 1.527540e-01	ci left: 2.167166e-03	ci right 2.528972e-03	k: 656	n:280000
SPRYD5   280000 perm   94 sec   (2985 perm/sec)   p_kst 2.342857e-03   p_cons 6.665500e-01   p_joint 6.275000e-03

Joint ci ratio: 8.595547e-02	ci left: 6.814498e-03	ci right 7.429896e-03	k: 2064	n:290000
Cons ci ratio: 5.147851e-03	ci left: 6.648912e-01	ci right 6.683262e-01	k: 193317	n:290000
KS ci ratio: 1.513808e-01	ci left: 2.132238e-03	ci right 2.484722e-03	k: 668	n:290000
SPRYD5   290000 perm   98 sec   (2948 perm/sec)   p_kst 2.303448e-03   p_cons 6.666103e-01   p_joint 7.117241e-03

Joint ci ratio: 8.760391e-02	ci left: 6.339444e-03	ci right 6.923481e-03	k: 1988	n:300000
Cons ci ratio: 5.063267e-03	ci left: 6.647496e-01	ci right 6.681272e-01	k: 199932	n:300000
KS ci ratio: 1.487362e-01	ci left: 2.138160e-03	ci right 2.484899e-03	k: 692	n:300000
SPRYD5   300000 perm   103 sec   (2908 perm/sec)   p_kst 2.306667e-03   p_cons 6.664400e-01   p_joint 6.626667e-03

Joint ci ratio: 8.728271e-02	ci left: 6.182253e-03	ci right 6.749613e-03	k: 2003	n:310000
Cons ci ratio: 4.981236e-03	ci left: 6.647500e-01	ci right 6.680727e-01	k: 206588	n:310000
KS ci ratio: 1.457171e-01	ci left: 2.159291e-03	ci right 2.501731e-03	k: 721	n:310000
SPRYD5   310000 perm   108 sec   (2869 perm/sec)   p_kst 2.325806e-03   p_cons 6.664129e-01   p_joint 6.461290e-03

Joint ci ratio: 7.961570e-02	ci left: 7.219291e-03	ci right 7.820930e-03	k: 2405	n:320000
Cons ci ratio: 4.904548e-03	ci left: 6.646163e-01	ci right 6.678870e-01	k: 213201	n:320000
KS ci ratio: 1.439351e-01	ci left: 2.146024e-03	ci right 2.481840e-03	k: 739	n:320000
SPRYD5   320000 perm   113 sec   (2833 perm/sec)   p_kst 2.309375e-03   p_cons 6.662531e-01   p_joint 7.515625e-03

Joint ci ratio: 7.626413e-02	ci left: 7.639407e-03	ci right 8.248069e-03	k: 2620	n:330000
Cons ci ratio: 4.829881e-03	ci left: 6.646215e-01	ci right 6.678423e-01	k: 219857	n:330000
KS ci ratio: 1.421230e-01	ci left: 2.136508e-03	ci right 2.466269e-03	k: 758	n:330000
SPRYD5   330000 perm   118 sec   (2795 perm/sec)   p_kst 2.296970e-03   p_cons 6.662333e-01   p_joint 7.939394e-03

Joint ci ratio: 7.518230e-02	ci left: 7.634015e-03	ci right 8.233241e-03	k: 2696	n:340000
Cons ci ratio: 4.759404e-03	ci left: 6.645443e-01	ci right 6.677176e-01	k: 226485	n:340000
KS ci ratio: 1.393935e-01	ci left: 2.158799e-03	ci right 2.485070e-03	k: 788	n:340000
SPRYD5   340000 perm   123 sec   (2761 perm/sec)   p_kst 2.317647e-03   p_cons 6.661324e-01   p_joint 7.929412e-03

Joint ci ratio: 7.453912e-02	ci left: 7.547659e-03	ci right 8.134819e-03	k: 2743	n:350000
Cons ci ratio: 4.689815e-03	ci left: 6.646721e-01	ci right 6.677994e-01	k: 233183	n:350000
KS ci ratio: 1.377456e-01	ci left: 2.149522e-03	ci right 2.470235e-03	k: 807	n:350000
SPRYD5   350000 perm   128 sec   (2727 perm/sec)   p_kst 2.305714e-03   p_cons 6.662371e-01   p_joint 7.837143e-03

Joint ci ratio: 7.668848e-02	ci left: 6.929127e-03	ci right 7.484405e-03	k: 2593	n:360000
Cons ci ratio: 4.624953e-03	ci left: 6.646235e-01	ci right 6.677072e-01	k: 239820	n:360000
KS ci ratio: 1.361549e-01	ci left: 2.140782e-03	ci right 2.456204e-03	k: 826	n:360000
SPRYD5   360000 perm   134 sec   (2691 perm/sec)   p_kst 2.294444e-03   p_cons 6.661667e-01   p_joint 7.202778e-03

Joint ci ratio: 6.975874e-02	ci left: 8.166859e-03	ci right 8.759796e-03	k: 3130	n:370000
Cons ci ratio: 4.562599e-03	ci left: 6.645886e-01	ci right 6.676304e-01	k: 246461	n:370000
KS ci ratio: 1.343002e-01	ci left: 2.142982e-03	ci right 2.454084e-03	k: 849	n:370000
SPRYD5   370000 perm   139 sec   (2659 perm/sec)   p_kst 2.294595e-03   p_cons 6.661108e-01   p_joint 8.459459e-03

Joint ci ratio: 6.964332e-02	ci left: 7.980358e-03	ci right 8.558757e-03	k: 3141	n:380000
Cons ci ratio: 4.502940e-03	ci left: 6.645321e-01	ci right 6.675338e-01	k: 253093	n:380000
KS ci ratio: 1.322916e-01	ci left: 2.152728e-03	ci right 2.460203e-03	k: 875	n:380000
SPRYD5   380000 perm   145 sec   (2629 perm/sec)   p_kst 2.302632e-03   p_cons 6.660342e-01   p_joint 8.265789e-03

Joint ci ratio: 7.085419e-02	ci left: 7.511168e-03	ci right 8.065414e-03	k: 3036	n:390000
Cons ci ratio: 4.445740e-03	ci left: 6.644608e-01	ci right 6.674239e-01	k: 259718	n:390000
KS ci ratio: 1.305884e-01	ci left: 2.154565e-03	ci right 2.458033e-03	k: 898	n:390000
SPRYD5   390000 perm   150 sec   (2599 perm/sec)   p_kst 2.302564e-03   p_cons 6.659436e-01   p_joint 7.784615e-03

Joint ci ratio: 7.008629e-02	ci left: 7.487934e-03	ci right 8.034233e-03	k: 3103	n:400000
Cons ci ratio: 4.390716e-03	ci left: 6.643883e-01	ci right 6.673143e-01	k: 266341	n:400000
KS ci ratio: 1.290194e-01	ci left: 2.153915e-03	ci right 2.453367e-03	k: 920	n:400000
SPRYD5   400000 perm   156 sec   (2570 perm/sec)   p_kst 2.300000e-03   p_cons 6.658525e-01   p_joint 7.757500e-03

Joint ci ratio: 7.222173e-02	ci left: 6.876404e-03	ci right 7.394013e-03	k: 2924	n:410000
Cons ci ratio: 4.335427e-03	ci left: 6.645515e-01	ci right 6.674413e-01	k: 273059	n:410000
KS ci ratio: 1.267668e-01	ci left: 2.179295e-03	ci right 2.476589e-03	k: 953	n:410000
SPRYD5   410000 perm   161 sec   (2542 perm/sec)   p_kst 2.324390e-03   p_cons 6.659976e-01   p_joint 7.131707e-03

Joint ci ratio: 7.146906e-02	ci left: 6.857644e-03	ci right 7.368239e-03	k: 2986	n:420000
Cons ci ratio: 4.281532e-03	ci left: 6.647739e-01	ci right 6.676286e-01	k: 279805	n:420000
KS ci ratio: 1.255883e-01	ci left: 2.168911e-03	ci right 2.461832e-03	k: 971	n:420000
SPRYD5   420000 perm   167 sec   (2516 perm/sec)   p_kst 2.311905e-03   p_cons 6.662024e-01   p_joint 7.109524e-03

Joint ci ratio: 7.079793e-02	ci left: 6.828361e-03	ci right 7.331804e-03	k: 3043	n:430000
Cons ci ratio: 4.231631e-03	ci left: 6.647719e-01	ci right 6.675933e-01	k: 286459	n:430000
KS ci ratio: 1.245683e-01	ci left: 2.154515e-03	ci right 2.442955e-03	k: 987	n:430000
SPRYD5   430000 perm   173 sec   (2487 perm/sec)   p_kst 2.295349e-03   p_cons 6.661837e-01   p_joint 7.076744e-03

Joint ci ratio: 7.150481e-02	ci left: 6.541431e-03	ci right 7.028734e-03	k: 2984	n:440000
Cons ci ratio: 4.182410e-03	ci left: 6.648795e-01	ci right 6.676683e-01	k: 293161	n:440000
KS ci ratio: 1.230822e-01	ci left: 2.158405e-03	ci right 2.443667e-03	k: 1011	n:440000
SPRYD5   440000 perm   179 sec   (2461 perm/sec)   p_kst 2.297727e-03   p_cons 6.662750e-01   p_joint 6.781818e-03

Joint ci ratio: 7.103269e-02	ci left: 6.483364e-03	ci right 6.963021e-03	k: 3024	n:450000
Cons ci ratio: 4.136065e-03	ci left: 6.648534e-01	ci right 6.676111e-01	k: 299805	n:450000
KS ci ratio: 1.217659e-01	ci left: 2.157832e-03	ci right 2.439748e-03	k: 1033	n:450000
SPRYD5   450000 perm   185 sec   (2434 perm/sec)   p_kst 2.295556e-03   p_cons 6.662333e-01   p_joint 6.720000e-03

Joint ci ratio: 7.067430e-02	ci left: 6.408610e-03	ci right 6.880245e-03	k: 3055	n:460000
Cons ci ratio: 4.090988e-03	ci left: 6.648547e-01	ci right 6.675823e-01	k: 306461	n:460000
KS ci ratio: 1.204910e-01	ci left: 2.157300e-03	ci right 2.435985e-03	k: 1055	n:460000
SPRYD5   460000 perm   191 sec   (2404 perm/sec)   p_kst 2.293478e-03   p_cons 6.662196e-01   p_joint 6.641304e-03

Joint ci ratio: 7.024109e-02	ci left: 6.351676e-03	ci right 6.816140e-03	k: 3093	n:470000
Cons ci ratio: 4.048515e-03	ci left: 6.647283e-01	ci right 6.674271e-01	k: 313057	n:470000
KS ci ratio: 1.189240e-01	ci left: 2.169191e-03	ci right 2.445512e-03	k: 1083	n:470000
SPRYD5   470000 perm   198 sec   (2379 perm/sec)   p_kst 2.304255e-03   p_cons 6.660787e-01   p_joint 6.580851e-03

Joint ci ratio: 6.461923e-02	ci left: 7.362399e-03	ci right 7.856072e-03	k: 3651	n:480000
Cons ci ratio: 4.005610e-03	ci left: 6.647993e-01	ci right 6.674696e-01	k: 319745	n:480000
KS ci ratio: 1.216568e-01	ci left: 2.026999e-03	ci right 2.291568e-03	k: 1035	n:480000
SPRYD5   480000 perm   204 sec   (2353 perm/sec)   p_kst 2.156250e-03   p_cons 6.661354e-01   p_joint 7.606250e-03

Joint ci ratio: 6.406115e-02	ci left: 7.340654e-03	ci right 7.828460e-03	k: 3715	n:490000
Cons ci ratio: 3.964369e-03	ci left: 6.648306e-01	ci right 6.674735e-01	k: 326415	n:490000
KS ci ratio: 1.206714e-01	ci left: 2.019274e-03	ci right 2.280546e-03	k: 1052	n:490000
SPRYD5   490000 perm   210 sec   (2328 perm/sec)   p_kst 2.146939e-03   p_cons 6.661531e-01   p_joint 7.581633e-03

Joint ci ratio: 6.233989e-02	ci left: 7.601331e-03	ci right 8.092398e-03	k: 3922	n:500000
Cons ci ratio: 3.924552e-03	ci left: 6.648409e-01	ci right 6.674572e-01	k: 333075	n:500000
KS ci ratio: 1.190975e-01	ci left: 2.033210e-03	ci right 2.292613e-03	k: 1080	n:500000
SPRYD5   500000 perm   217 sec   (2304 perm/sec)   p_kst 2.160000e-03   p_cons 6.661500e-01   p_joint 7.844000e-03

Joint ci ratio: 6.928595e-02	ci left: 6.021083e-03	ci right 6.455143e-03	k: 3180	n:510000
Cons ci ratio: 3.886459e-03	ci left: 6.647881e-01	ci right 6.673787e-01	k: 339703	n:510000
KS ci ratio: 1.180111e-01	ci left: 2.031395e-03	ci right 2.288038e-03	k: 1100	n:510000
SPRYD5   510000 perm   224 sec   (2281 perm/sec)   p_kst 2.156863e-03   p_cons 6.660843e-01   p_joint 6.235294e-03

Joint ci ratio: 6.881290e-02	ci left: 5.988444e-03	ci right 6.417086e-03	k: 3224	n:520000
Cons ci ratio: 3.849987e-03	ci left: 6.646758e-01	ci right 6.672416e-01	k: 346299	n:520000
KS ci ratio: 1.172160e-01	ci left: 2.020327e-03	ci right 2.273733e-03	k: 1115	n:520000
SPRYD5   520000 perm   230 sec   (2259 perm/sec)   p_kst 2.144231e-03   p_cons 6.659596e-01   p_joint 6.200000e-03

Joint ci ratio: 6.502922e-02	ci left: 6.587931e-03	ci right 7.032580e-03	k: 3608	n:530000
Cons ci ratio: 3.813924e-03	ci left: 6.646377e-01	ci right 6.671793e-01	k: 352932	n:530000
KS ci ratio: 1.133167e-01	ci left: 2.125142e-03	ci right 2.382234e-03	k: 1193	n:530000
SPRYD5   530000 perm   237 sec   (2238 perm/sec)   p_kst 2.250943e-03   p_cons 6.659094e-01   p_joint 6.807547e-03

Joint ci ratio: 5.696022e-02	ci left: 8.446717e-03	ci right 8.943761e-03	k: 4694	n:540000
Cons ci ratio: 3.647487e-03	ci left: 6.801721e-01	ci right 6.826593e-01	k: 367965	n:540000
KS ci ratio: 1.121023e-01	ci left: 2.132579e-03	ci right 2.387623e-03	k: 1219	n:540000
SPRYD5   540000 perm   244 sec   (2217 perm/sec)   p_kst 2.257407e-03   p_cons 6.814167e-01   p_joint 8.692593e-03

Joint ci ratio: 5.669137e-02	ci left: 8.373787e-03	ci right 8.864137e-03	k: 4739	n:550000
Cons ci ratio: 3.614028e-03	ci left: 6.802013e-01	ci right 6.826658e-01	k: 374789	n:550000
KS ci ratio: 1.112848e-01	ci left: 2.125617e-03	ci right 2.377854e-03	k: 1237	n:550000
SPRYD5   550000 perm   250 sec   (2196 perm/sec)   p_kst 2.249091e-03   p_cons 6.814345e-01   p_joint 8.616364e-03

Joint ci ratio: 5.627227e-02	ci left: 8.349247e-03	ci right 8.834429e-03	k: 4810	n:560000
Cons ci ratio: 3.582474e-03	ci left: 6.801081e-01	ci right 6.825507e-01	k: 381545	n:560000
KS ci ratio: 1.105733e-01	ci left: 2.115438e-03	ci right 2.364757e-03	k: 1253	n:560000
SPRYD5   560000 perm   258 sec   (2172 perm/sec)   p_kst 2.237500e-03   p_cons 6.813304e-01   p_joint 8.589286e-03

Joint ci ratio: 5.579895e-02	ci left: 8.344613e-03	ci right 8.825314e-03	k: 4892	n:570000
Cons ci ratio: 3.551129e-03	ci left: 6.800920e-01	ci right 6.825131e-01	k: 388343	n:570000
KS ci ratio: 1.097021e-01	ci left: 2.112446e-03	ci right 2.359324e-03	k: 1273	n:570000
SPRYD5   570000 perm   265 sec   (2152 perm/sec)   p_kst 2.233333e-03   p_cons 6.813035e-01   p_joint 8.582456e-03

Joint ci ratio: 5.530374e-02	ci left: 8.350357e-03	ci right 8.826985e-03	k: 4980	n:580000
Cons ci ratio: 3.520453e-03	ci left: 6.800938e-01	ci right 6.824940e-01	k: 395151	n:580000
KS ci ratio: 1.088092e-01	ci left: 2.111241e-03	ci right 2.355842e-03	k: 1294	n:580000
SPRYD5   580000 perm   272 sec   (2133 perm/sec)   p_kst 2.231034e-03   p_cons 6.812948e-01   p_joint 8.586207e-03

Joint ci ratio: 5.515168e-02	ci left: 8.255617e-03	ci right 8.725500e-03	k: 5008	n:590000
Cons ci ratio: 3.490382e-03	ci left: 6.801177e-01	ci right 6.824974e-01	k: 401972	n:590000
KS ci ratio: 1.078555e-01	ci left: 2.113385e-03	ci right 2.355951e-03	k: 1317	n:590000
SPRYD5   590000 perm   279 sec   (2113 perm/sec)   p_kst 2.232203e-03   p_cons 6.813085e-01   p_joint 8.488136e-03

Joint ci ratio: 5.477643e-02	ci left: 8.231440e-03	ci right 8.696658e-03	k: 5077	n:600000
Cons ci ratio: 3.461493e-03	ci left: 6.800875e-01	ci right 6.824474e-01	k: 408761	n:600000
KS ci ratio: 1.070065e-01	ci left: 2.112221e-03	ci right 2.352626e-03	k: 1338	n:600000
SPRYD5   600000 perm   286 sec   (2095 perm/sec)   p_kst 2.230000e-03   p_cons 6.812683e-01   p_joint 8.461667e-03

Joint ci ratio: 5.501013e-02	ci left: 8.028568e-03	ci right 8.484317e-03	k: 5035	n:610000
Cons ci ratio: 3.432688e-03	ci left: 6.801372e-01	ci right 6.824775e-01	k: 415598	n:610000
KS ci ratio: 1.062164e-01	ci left: 2.109507e-03	ci right 2.347719e-03	k: 1358	n:610000
SPRYD5   610000 perm   294 sec   (2076 perm/sec)   p_kst 2.226230e-03   p_cons 6.813082e-01   p_joint 8.254098e-03

Joint ci ratio: 5.478942e-02	ci left: 7.964289e-03	ci right 8.414518e-03	k: 5076	n:620000
Cons ci ratio: 3.405488e-03	ci left: 6.800707e-01	ci right 6.823922e-01	k: 422364	n:620000
KS ci ratio: 1.057901e-01	ci left: 2.092753e-03	ci right 2.328066e-03	k: 1369	n:620000
SPRYD5   620000 perm   301 sec   (2058 perm/sec)   p_kst 2.208065e-03   p_cons 6.812323e-01   p_joint 8.187097e-03

Joint ci ratio: 5.429921e-02	ci left: 7.981914e-03	ci right 8.428975e-03	k: 5168	n:630000
Cons ci ratio: 3.379085e-03	ci left: 6.799857e-01	ci right 6.822888e-01	k: 429117	n:630000
KS ci ratio: 1.046499e-01	ci left: 2.105901e-03	ci right 2.339983e-03	k: 1399	n:630000
SPRYD5   630000 perm   309 sec   (2040 perm/sec)   p_kst 2.220635e-03   p_cons 6.811381e-01   p_joint 8.203175e-03

Joint ci ratio: 5.434513e-02	ci left: 7.844851e-03	ci right 8.284619e-03	k: 5160	n:640000
Cons ci ratio: 3.352839e-03	ci left: 6.799613e-01	ci right 6.822464e-01	k: 435907	n:640000
KS ci ratio: 1.040206e-01	ci left: 2.098866e-03	ci right 2.330677e-03	k: 1416	n:640000
SPRYD5   640000 perm   316 sec   (2023 perm/sec)   p_kst 2.212500e-03   p_cons 6.811047e-01   p_joint 8.062500e-03

Joint ci ratio: 5.425852e-02	ci left: 7.749950e-03	ci right 8.183683e-03	k: 5177	n:650000
Cons ci ratio: 3.326607e-03	ci left: 6.800147e-01	ci right 6.822821e-01	k: 442747	n:650000
KS ci ratio: 1.030074e-01	ci left: 2.108538e-03	ci right 2.339012e-03	k: 1444	n:650000
SPRYD5   650000 perm   324 sec   (2007 perm/sec)   p_kst 2.221538e-03   p_cons 6.811492e-01   p_joint 7.964615e-03

Joint ci ratio: 5.410931e-02	ci left: 7.675863e-03	ci right 8.104231e-03	k: 5206	n:660000
Cons ci ratio: 3.301903e-03	ci left: 6.799453e-01	ci right 6.821956e-01	k: 449507	n:660000
KS ci ratio: 1.024775e-01	ci left: 2.098733e-03	ci right 2.326884e-03	k: 1459	n:660000
SPRYD5   660000 perm   332 sec   (1990 perm/sec)   p_kst 2.210606e-03   p_cons 6.810712e-01   p_joint 7.887879e-03

Joint ci ratio: 5.447749e-02	ci left: 7.459688e-03	ci right 7.878914e-03	k: 5137	n:670000
Cons ci ratio: 3.277436e-03	ci left: 6.799183e-01	ci right 6.821518e-01	k: 456294	n:670000
KS ci ratio: 1.017484e-01	ci left: 2.097951e-03	ci right 2.324298e-03	k: 1480	n:670000
SPRYD5   670000 perm   340 sec   (1973 perm/sec)   p_kst 2.208955e-03   p_cons 6.810358e-01   p_joint 7.667164e-03

Joint ci ratio: 5.675053e-02	ci left: 6.769859e-03	ci right 7.166712e-03	k: 4737	n:680000
Cons ci ratio: 3.252129e-03	ci left: 6.800762e-01	ci right 6.822929e-01	k: 463206	n:680000
KS ci ratio: 1.008666e-01	ci left: 2.104366e-03	ci right 2.329320e-03	k: 1506	n:680000
SPRYD5   680000 perm   347 sec   (1957 perm/sec)   p_kst 2.214706e-03   p_cons 6.811853e-01   p_joint 6.966176e-03

Joint ci ratio: 5.718028e-02	ci left: 6.571722e-03	ci right 6.959973e-03	k: 4667	n:690000
Cons ci ratio: 3.228303e-03	ci left: 6.801077e-01	ci right 6.823082e-01	k: 470034	n:690000
KS ci ratio: 1.001712e-01	ci left: 2.103537e-03	ci right 2.326762e-03	k: 1527	n:690000
SPRYD5   690000 perm   356 sec   (1941 perm/sec)   p_kst 2.213043e-03   p_cons 6.812087e-01   p_joint 6.763768e-03

Joint ci ratio: 5.749386e-02	ci left: 6.407420e-03	ci right 6.788109e-03	k: 4617	n:700000
Cons ci ratio: 3.205161e-03	ci left: 6.801154e-01	ci right 6.823002e-01	k: 476846	n:700000
KS ci ratio: 9.961889e-02	ci left: 2.097166e-03	ci right 2.318415e-03	k: 1544	n:700000
SPRYD5   700000 perm   364 sec   (1924 perm/sec)   p_kst 2.205714e-03   p_cons 6.812086e-01   p_joint 6.595714e-03

Outputting figure to mutsig2_images.part000000000166/SPRYD5.9_1383_700000_0.0022057_0.68121_0.0065957.png
                gene_name: SPRYD5
               theta_stop: 0.100 
                    nperm: 700000 
                     p_ks: 0.0022 
        ci_ks_bounds_left: 0.0021 
       ci_ks_bounds_right: 0.0023 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.0066 
     ci_joint_bounds_left: 0.0064 
    ci_joint_bounds_right: 0.0068 

Current progress: 10 percent done.
SPTB
Processing conservation and coverage...
Processing mutations... 
Skipping 2 mutations outside exons of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.050121e-02	ci left: 4.737614e-01	ci right 4.934481e-01	k: 4836	n:10000
Cons ci ratio: 3.703552e-02	ci left: 5.184588e-01	ci right 5.381247e-01	k: 5283	n:10000
KS ci ratio: 6.261065e-02	ci left: 2.727001e-01	ci right 2.904273e-01	k: 2815	n:10000
SPTB   10000 perm   3 sec   (3337 perm/sec)   p_kst 2.815000e-01   p_cons 5.283000e-01   p_joint 4.836000e-01

Outputting figure to mutsig2_images.part000000000166/SPTB.7_7196_10000_0.2815_0.5283_0.4836.png
                gene_name: SPTB
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 12 percent done.
SPTBN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.268081e-02	ci left: 5.801849e-01	ci right 5.995628e-01	k: 5899	n:10000
Cons ci ratio: 7.385259e-02	ci left: 2.116174e-01	ci right 2.279461e-01	k: 2197	n:10000
KS ci ratio: 2.149076e-02	ci left: 7.605104e-01	ci right 7.771327e-01	k: 7689	n:10000
SPTBN2   10000 perm   3 sec   (3273 perm/sec)   p_kst 7.689000e-01   p_cons 2.197000e-01   p_joint 5.899000e-01

Outputting figure to mutsig2_images.part000000000166/SPTBN2.9_7317_10000_0.7689_0.2197_0.5899.png
                gene_name: SPTBN2
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 15 percent done.
SPTBN5
Processing conservation and coverage...
89% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.608365e-02	ci left: 3.188987e-01	ci right 3.374015e-01	k: 3281	n:10000
KS ci ratio: 1.794294e-02	ci left: 8.192382e-01	ci right 8.341709e-01	k: 8268	n:10000
SPTBN5   10000 perm   4 sec   (2580 perm/sec)   p_kst 8.268000e-01   p_cons 3.281000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000166/SPTBN5.7_11188_10000_0.8268_0.3281_1.png
                gene_name: SPTBN5
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 17 percent done.
SPOPL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.177092e-01	ci left: 4.232871e-03	ci right 7.265981e-03	k: 56	n:10000
Cons ci ratio: 1.004304e-01	ci left: 1.255214e-01	ci right 1.388936e-01	k: 1321	n:10000
KS ci ratio: 6.346671e-01	ci left: 2.606439e-03	ci right 5.096391e-03	k: 37	n:10000
SPOPL   10000 perm   2 sec   (5795 perm/sec)   p_kst 3.700000e-03   p_cons 1.321000e-01   p_joint 5.600000e-03

Joint ci ratio: 7.682562e-01	ci left: 8.090923e-04	ci right 1.844697e-03	k: 25	n:20000
Cons ci ratio: 7.277074e-02	ci left: 1.220703e-01	ci right 1.313386e-01	k: 2533	n:20000
KS ci ratio: 4.817099e-01	ci left: 2.509150e-03	ci right 4.140543e-03	k: 65	n:20000
SPOPL   20000 perm   4 sec   (5103 perm/sec)   p_kst 3.250000e-03   p_cons 1.266500e-01   p_joint 1.250000e-03

Joint ci ratio: 3.225177e-01	ci left: 4.110775e-03	ci right 5.720741e-03	k: 146	n:30000
Cons ci ratio: 5.909738e-02	ci left: 1.241073e-01	ci right 1.316982e-01	k: 3836	n:30000
KS ci ratio: 3.874710e-01	ci left: 2.743017e-03	ci right 4.089323e-03	k: 101	n:30000
SPOPL   30000 perm   6 sec   (4829 perm/sec)   p_kst 3.366667e-03   p_cons 1.278667e-01   p_joint 4.866667e-03

Joint ci ratio: 4.324423e-01	ci left: 1.608458e-03	ci right 2.516271e-03	k: 81	n:40000
Cons ci ratio: 5.122591e-02	ci left: 1.244191e-01	ci right 1.309850e-01	k: 5107	n:40000
KS ci ratio: 3.380645e-01	ci left: 2.784672e-03	ci right 3.939287e-03	k: 133	n:40000
SPOPL   40000 perm   9 sec   (4662 perm/sec)   p_kst 3.325000e-03   p_cons 1.276750e-01   p_joint 2.025000e-03

Joint ci ratio: 4.299143e-01	ci left: 1.304547e-03	ci right 2.035270e-03	k: 82	n:50000
Cons ci ratio: 4.553224e-02	ci left: 1.261527e-01	ci right 1.320504e-01	k: 6454	n:50000
KS ci ratio: 2.884511e-01	ci left: 3.149686e-03	ci right 4.229200e-03	k: 183	n:50000
SPOPL   50000 perm   11 sec   (4528 perm/sec)   p_kst 3.660000e-03   p_cons 1.290800e-01   p_joint 1.640000e-03

Joint ci ratio: 4.379734e-01	ci left: 1.042552e-03	ci right 1.640693e-03	k: 79	n:60000
Cons ci ratio: 4.174164e-02	ci left: 1.254686e-01	ci right 1.308341e-01	k: 7688	n:60000
KS ci ratio: 2.650110e-01	ci left: 3.152148e-03	ci right 4.130165e-03	k: 217	n:60000
SPOPL   60000 perm   14 sec   (4421 perm/sec)   p_kst 3.616667e-03   p_cons 1.281333e-01   p_joint 1.316667e-03

Joint ci ratio: 3.956997e-01	ci left: 1.123860e-03	ci right 1.690196e-03	k: 97	n:70000
Cons ci ratio: 3.881794e-02	ci left: 1.246834e-01	ci right 1.296333e-01	k: 8900	n:70000
KS ci ratio: 2.450307e-01	ci left: 3.196683e-03	ci right 4.102371e-03	k: 254	n:70000
SPOPL   70000 perm   16 sec   (4326 perm/sec)   p_kst 3.628571e-03   p_cons 1.271429e-01   p_joint 1.385714e-03

Joint ci ratio: 3.252411e-01	ci left: 1.518222e-03	ci right 2.118831e-03	k: 144	n:80000
Cons ci ratio: 3.614128e-02	ci left: 1.258782e-01	ci right 1.305238e-01	k: 10255	n:80000
KS ci ratio: 2.342732e-01	ci left: 3.079068e-03	ci right 3.907583e-03	k: 278	n:80000
SPOPL   80000 perm   19 sec   (4236 perm/sec)   p_kst 3.475000e-03   p_cons 1.281875e-01   p_joint 1.800000e-03

Joint ci ratio: 3.475963e-01	ci left: 1.166367e-03	ci right 1.666656e-03	k: 126	n:90000
Cons ci ratio: 3.396973e-02	ci left: 1.266952e-01	ci right 1.310843e-01	k: 11599	n:90000
KS ci ratio: 2.187435e-01	ci left: 3.166698e-03	ci right 3.954722e-03	k: 319	n:90000
SPOPL   90000 perm   22 sec   (4150 perm/sec)   p_kst 3.544444e-03   p_cons 1.288778e-01   p_joint 1.400000e-03

Joint ci ratio: 3.287238e-01	ci left: 1.187005e-03	ci right 1.662669e-03	k: 141	n:100000
Cons ci ratio: 3.221633e-02	ci left: 1.268786e-01	ci right 1.310430e-01	k: 12895	n:100000
KS ci ratio: 2.070967e-01	ci left: 3.200316e-03	ci right 3.948933e-03	k: 356	n:100000
SPOPL   100000 perm   25 sec   (4070 perm/sec)   p_kst 3.560000e-03   p_cons 1.289500e-01   p_joint 1.410000e-03

Joint ci ratio: 2.677037e-01	ci left: 1.685239e-03	ci right 2.214300e-03	k: 213	n:110000
Cons ci ratio: 3.071037e-02	ci left: 1.270244e-01	ci right 1.309952e-01	k: 14190	n:110000
KS ci ratio: 1.963829e-01	ci left: 3.254665e-03	ci right 3.971899e-03	k: 396	n:110000
SPOPL   110000 perm   28 sec   (3999 perm/sec)   p_kst 3.600000e-03   p_cons 1.290000e-01   p_joint 1.936364e-03

Joint ci ratio: 1.826189e-01	ci left: 3.475663e-03	ci right 4.181982e-03	k: 458	n:120000
Cons ci ratio: 2.941723e-02	ci left: 1.270006e-01	ci right 1.308007e-01	k: 15467	n:120000
KS ci ratio: 1.871765e-01	ci left: 3.300786e-03	ci right 3.990210e-03	k: 436	n:120000
SPOPL   120000 perm   31 sec   (3933 perm/sec)   p_kst 3.633333e-03   p_cons 1.288917e-01   p_joint 3.816667e-03

Joint ci ratio: 1.758545e-01	ci left: 3.472805e-03	ci right 4.149624e-03	k: 494	n:130000
Cons ci ratio: 2.825736e-02	ci left: 1.271211e-01	ci right 1.307723e-01	k: 16762	n:130000
KS ci ratio: 1.804883e-01	ci left: 3.289045e-03	ci right 3.948787e-03	k: 469	n:130000
SPOPL   130000 perm   34 sec   (3864 perm/sec)   p_kst 3.607692e-03   p_cons 1.289385e-01   p_joint 3.800000e-03

Joint ci ratio: 1.694699e-01	ci left: 3.484451e-03	ci right 4.136365e-03	k: 532	n:140000
Cons ci ratio: 2.725762e-02	ci left: 1.269571e-01	ci right 1.304726e-01	k: 18019	n:140000
KS ci ratio: 1.741222e-01	ci left: 3.293021e-03	ci right 3.927812e-03	k: 504	n:140000
SPOPL   140000 perm   37 sec   (3800 perm/sec)   p_kst 3.600000e-03   p_cons 1.287071e-01   p_joint 3.800000e-03

Joint ci ratio: 2.307656e-01	ci left: 1.698531e-03	ci right 2.147738e-03	k: 287	n:150000
Cons ci ratio: 2.630690e-02	ci left: 1.272412e-01	ci right 1.306398e-01	k: 19340	n:150000
KS ci ratio: 1.669945e-01	ci left: 3.354310e-03	ci right 3.971786e-03	k: 548	n:150000
SPOPL   150000 perm   40 sec   (3740 perm/sec)   p_kst 3.653333e-03   p_cons 1.289333e-01   p_joint 1.913333e-03

Joint ci ratio: 2.246130e-01	ci left: 1.686669e-03	ci right 2.119200e-03	k: 303	n:160000
Cons ci ratio: 2.545271e-02	ci left: 1.274606e-01	ci right 1.307528e-01	k: 20656	n:160000
KS ci ratio: 1.621929e-01	ci left: 3.342419e-03	ci right 3.938290e-03	k: 581	n:160000
SPOPL   160000 perm   43 sec   (3681 perm/sec)   p_kst 3.631250e-03   p_cons 1.291000e-01   p_joint 1.893750e-03

Joint ci ratio: 2.152522e-01	ci left: 1.737536e-03	ci right 2.162090e-03	k: 330	n:170000
Cons ci ratio: 2.471932e-02	ci left: 1.272696e-01	ci right 1.304608e-01	k: 21906	n:170000
KS ci ratio: 1.586920e-01	ci left: 3.292600e-03	ci right 3.865711e-03	k: 607	n:170000
SPOPL   170000 perm   47 sec   (3612 perm/sec)   p_kst 3.570588e-03   p_cons 1.288588e-01   p_joint 1.941176e-03

Joint ci ratio: 2.084353e-01	ci left: 1.756747e-03	ci right 2.170667e-03	k: 352	n:180000
Cons ci ratio: 2.403872e-02	ci left: 1.271673e-01	ci right 1.302669e-01	k: 23168	n:180000
KS ci ratio: 1.541926e-01	ci left: 3.301850e-03	ci right 3.858771e-03	k: 643	n:180000
SPOPL   180000 perm   51 sec   (3556 perm/sec)   p_kst 3.572222e-03   p_cons 1.287111e-01   p_joint 1.955556e-03

Joint ci ratio: 2.030429e-01	ci left: 1.759136e-03	ci right 2.161566e-03	k: 371	n:190000
Cons ci ratio: 2.340755e-02	ci left: 1.271135e-01	ci right 1.301294e-01	k: 24437	n:190000
KS ci ratio: 1.497244e-01	ci left: 3.325531e-03	ci right 3.868736e-03	k: 682	n:190000
SPOPL   190000 perm   54 sec   (3498 perm/sec)   p_kst 3.589474e-03   p_cons 1.286158e-01   p_joint 1.952632e-03

Joint ci ratio: 1.374552e-01	ci left: 3.771538e-03	ci right 4.332987e-03	k: 809	n:200000
Cons ci ratio: 2.282872e-02	ci left: 1.270164e-01	ci right 1.299544e-01	k: 25696	n:200000
KS ci ratio: 1.457247e-01	ci left: 3.342234e-03	ci right 3.872314e-03	k: 720	n:200000
SPOPL   200000 perm   58 sec   (3442 perm/sec)   p_kst 3.600000e-03   p_cons 1.284800e-01   p_joint 4.045000e-03

Joint ci ratio: 1.455348e-01	ci left: 3.192239e-03	ci right 3.697811e-03	k: 722	n:210000
Cons ci ratio: 2.228653e-02	ci left: 1.269720e-01	ci right 1.298383e-01	k: 26964	n:210000
KS ci ratio: 1.420293e-01	ci left: 3.357521e-03	ci right 3.875377e-03	k: 758	n:210000
SPOPL   210000 perm   62 sec   (3387 perm/sec)   p_kst 3.609524e-03   p_cons 1.284000e-01   p_joint 3.438095e-03

Joint ci ratio: 1.414810e-01	ci left: 3.231197e-03	ci right 3.727482e-03	k: 764	n:220000
Cons ci ratio: 2.176797e-02	ci left: 1.270681e-01	ci right 1.298690e-01	k: 28262	n:220000
KS ci ratio: 1.379085e-01	ci left: 3.406682e-03	ci right 3.915624e-03	k: 804	n:220000
SPOPL   220000 perm   66 sec   (3341 perm/sec)   p_kst 3.654545e-03   p_cons 1.284636e-01   p_joint 3.472727e-03

Joint ci ratio: 1.558382e-01	ci left: 2.529648e-03	ci right 2.961296e-03	k: 630	n:230000
Cons ci ratio: 2.130012e-02	ci left: 1.269877e-01	ci right 1.297260e-01	k: 29521	n:230000
KS ci ratio: 1.343647e-01	ci left: 3.439158e-03	ci right 3.938695e-03	k: 847	n:230000
SPOPL   230000 perm   70 sec   (3295 perm/sec)   p_kst 3.682609e-03   p_cons 1.283522e-01   p_joint 2.739130e-03

Joint ci ratio: 1.524914e-01	ci left: 2.536413e-03	ci right 2.959072e-03	k: 658	n:240000
Cons ci ratio: 2.084953e-02	ci left: 1.270391e-01	ci right 1.297199e-01	k: 30810	n:240000
KS ci ratio: 1.315259e-01	ci left: 3.444900e-03	ci right 3.933873e-03	k: 884	n:240000
SPOPL   240000 perm   74 sec   (3251 perm/sec)   p_kst 3.683333e-03   p_cons 1.283750e-01   p_joint 2.741667e-03

Joint ci ratio: 1.184740e-01	ci left: 4.101609e-03	ci right 4.621985e-03	k: 1089	n:250000
Cons ci ratio: 2.043369e-02	ci left: 1.270073e-01	ci right 1.296333e-01	k: 32079	n:250000
KS ci ratio: 1.285801e-01	ci left: 3.465771e-03	ci right 3.945848e-03	k: 925	n:250000
SPOPL   250000 perm   78 sec   (3206 perm/sec)   p_kst 3.700000e-03   p_cons 1.283160e-01   p_joint 4.356000e-03

Joint ci ratio: 1.159988e-01	ci left: 4.119325e-03	ci right 4.630281e-03	k: 1136	n:260000
Cons ci ratio: 2.005903e-02	ci left: 1.267870e-01	ci right 1.293598e-01	k: 33298	n:260000
KS ci ratio: 1.258892e-01	ci left: 3.481423e-03	ci right 3.952823e-03	k: 965	n:260000
SPOPL   260000 perm   82 sec   (3163 perm/sec)   p_kst 3.711538e-03   p_cons 1.280692e-01   p_joint 4.369231e-03

Joint ci ratio: 1.187671e-01	ci left: 3.779780e-03	ci right 4.260592e-03	k: 1084	n:270000
Cons ci ratio: 1.966441e-02	ci left: 1.270333e-01	ci right 1.295598e-01	k: 34639	n:270000
KS ci ratio: 1.238557e-01	ci left: 3.467297e-03	ci right 3.928643e-03	k: 997	n:270000
SPOPL   270000 perm   87 sec   (3118 perm/sec)   p_kst 3.692593e-03   p_cons 1.282926e-01   p_joint 4.014815e-03

Joint ci ratio: 1.273697e-01	ci left: 3.156634e-03	ci right 3.589460e-03	k: 943	n:280000
Cons ci ratio: 1.933415e-02	ci left: 1.267788e-01	ci right 1.292574e-01	k: 35844	n:280000
KS ci ratio: 1.218582e-01	ci left: 3.457699e-03	ci right 3.909813e-03	k: 1030	n:280000
SPOPL   280000 perm   91 sec   (3077 perm/sec)   p_kst 3.678571e-03   p_cons 1.280143e-01   p_joint 3.367857e-03

Joint ci ratio: 1.254582e-01	ci left: 3.144621e-03	ci right 3.568848e-03	k: 972	n:290000
Cons ci ratio: 1.900263e-02	ci left: 1.267448e-01	ci right 1.291798e-01	k: 37108	n:290000
KS ci ratio: 1.198979e-01	ci left: 3.452163e-03	ci right 3.895777e-03	k: 1064	n:290000
SPOPL   290000 perm   95 sec   (3037 perm/sec)   p_kst 3.668966e-03   p_cons 1.279586e-01   p_joint 3.351724e-03

Joint ci ratio: 1.238164e-01	ci left: 3.123763e-03	ci right 3.539257e-03	k: 998	n:300000
Cons ci ratio: 1.868647e-02	ci left: 1.267267e-01	ci right 1.291204e-01	k: 38376	n:300000
KS ci ratio: 1.182996e-01	ci left: 3.430876e-03	ci right 3.865466e-03	k: 1093	n:300000
SPOPL   300000 perm   100 sec   (2997 perm/sec)   p_kst 3.643333e-03   p_cons 1.279200e-01   p_joint 3.326667e-03

Joint ci ratio: 1.222973e-01	ci left: 3.101156e-03	ci right 3.508216e-03	k: 1023	n:310000
Cons ci ratio: 1.837709e-02	ci left: 1.268130e-01	ci right 1.291682e-01	k: 39676	n:310000
KS ci ratio: 1.169204e-01	ci left: 3.401603e-03	ci right 3.827115e-03	k: 1119	n:310000
SPOPL   310000 perm   105 sec   (2958 perm/sec)   p_kst 3.609677e-03   p_cons 1.279871e-01   p_joint 3.300000e-03

Joint ci ratio: 1.444250e-01	ci left: 2.130962e-03	ci right 2.465654e-03	k: 734	n:320000
Cons ci ratio: 1.809956e-02	ci left: 1.266855e-01	ci right 1.290025e-01	k: 40909	n:320000
KS ci ratio: 1.150356e-01	ci left: 3.407574e-03	ci right 3.826495e-03	k: 1156	n:320000
SPOPL   320000 perm   110 sec   (2921 perm/sec)   p_kst 3.612500e-03   p_cons 1.278406e-01   p_joint 2.293750e-03

Joint ci ratio: 1.422170e-01	ci left: 2.133585e-03	ci right 2.463131e-03	k: 757	n:330000
Cons ci ratio: 1.781678e-02	ci left: 1.267834e-01	ci right 1.290656e-01	k: 42214	n:330000
KS ci ratio: 1.133821e-01	ci left: 3.404401e-03	ci right 3.816513e-03	k: 1190	n:330000
SPOPL   330000 perm   114 sec   (2884 perm/sec)   p_kst 3.606061e-03   p_cons 1.279212e-01   p_joint 2.293939e-03

Joint ci ratio: 1.393050e-01	ci left: 2.161638e-03	ci right 2.488113e-03	k: 789	n:340000
Cons ci ratio: 1.755797e-02	ci left: 1.267351e-01	ci right 1.289830e-01	k: 43471	n:340000
KS ci ratio: 1.112523e-01	ci left: 3.435768e-03	ci right 3.843352e-03	k: 1236	n:340000
SPOPL   340000 perm   119 sec   (2849 perm/sec)   p_kst 3.635294e-03   p_cons 1.278559e-01   p_joint 2.320588e-03

Joint ci ratio: 1.370672e-01	ci left: 2.171595e-03	ci right 2.493876e-03	k: 815	n:350000
Cons ci ratio: 1.730058e-02	ci left: 1.268123e-01	ci right 1.290282e-01	k: 44771	n:350000
KS ci ratio: 1.094955e-01	ci left: 3.448735e-03	ci right 3.850980e-03	k: 1276	n:350000
SPOPL   350000 perm   124 sec   (2816 perm/sec)   p_kst 3.645714e-03   p_cons 1.279171e-01   p_joint 2.328571e-03

Joint ci ratio: 1.350142e-01	ci left: 2.178355e-03	ci right 2.496407e-03	k: 840	n:360000
Cons ci ratio: 1.706714e-02	ci left: 1.267165e-01	ci right 1.289006e-01	k: 46010	n:360000
KS ci ratio: 1.076963e-01	ci left: 3.469139e-03	ci right 3.866694e-03	k: 1319	n:360000
SPOPL   360000 perm   129 sec   (2782 perm/sec)   p_kst 3.663889e-03   p_cons 1.278056e-01   p_joint 2.333333e-03

Joint ci ratio: 1.363245e-01	ci left: 2.077697e-03	ci right 2.384236e-03	k: 824	n:370000
Cons ci ratio: 1.684536e-02	ci left: 1.265938e-01	ci right 1.287471e-01	k: 47237	n:370000
KS ci ratio: 1.058661e-01	ci left: 3.496385e-03	ci right 3.889829e-03	k: 1365	n:370000
SPOPL   370000 perm   134 sec   (2751 perm/sec)   p_kst 3.689189e-03   p_cons 1.276676e-01   p_joint 2.227027e-03

Joint ci ratio: 1.343043e-01	ci left: 2.086584e-03	ci right 2.389507e-03	k: 849	n:380000
Cons ci ratio: 1.661471e-02	ci left: 1.267085e-01	ci right 1.288340e-01	k: 48552	n:380000
KS ci ratio: 1.043862e-01	ci left: 3.504309e-03	ci right 3.892794e-03	k: 1404	n:380000
SPOPL   380000 perm   140 sec   (2719 perm/sec)   p_kst 3.694737e-03   p_cons 1.277684e-01   p_joint 2.234211e-03

Joint ci ratio: 1.355117e-01	ci left: 1.995912e-03	ci right 2.288487e-03	k: 834	n:390000
Cons ci ratio: 1.639819e-02	ci left: 1.267511e-01	ci right 1.288493e-01	k: 49841	n:390000
KS ci ratio: 1.028951e-01	ci left: 3.516859e-03	ci right 3.900829e-03	k: 1445	n:390000
SPOPL   390000 perm   145 sec   (2687 perm/sec)   p_kst 3.705128e-03   p_cons 1.277974e-01   p_joint 2.138462e-03

Joint ci ratio: 1.339177e-01	ci left: 1.994329e-03	ci right 2.282959e-03	k: 854	n:400000
Cons ci ratio: 1.617995e-02	ci left: 1.269287e-01	ci right 1.290017e-01	k: 51185	n:400000
KS ci ratio: 1.019838e-01	ci left: 3.492270e-03	ci right 3.869976e-03	k: 1471	n:400000
SPOPL   400000 perm   151 sec   (2655 perm/sec)   p_kst 3.677500e-03   p_cons 1.279625e-01   p_joint 2.135000e-03

Joint ci ratio: 1.329124e-01	ci left: 1.976335e-03	ci right 2.260044e-03	k: 867	n:410000
Cons ci ratio: 1.597716e-02	ci left: 1.270007e-01	ci right 1.290485e-01	k: 52489	n:410000
KS ci ratio: 1.009610e-01	ci left: 3.478405e-03	ci right 3.850615e-03	k: 1501	n:410000
SPOPL   410000 perm   156 sec   (2627 perm/sec)   p_kst 3.660976e-03   p_cons 1.280220e-01   p_joint 2.114634e-03

Joint ci ratio: 1.288164e-01	ci left: 2.058254e-03	ci right 2.343922e-03	k: 923	n:420000
Cons ci ratio: 1.579309e-02	ci left: 1.269103e-01	ci right 1.289329e-01	k: 53726	n:420000
KS ci ratio: 1.000011e-01	ci left: 3.462897e-03	ci right 3.829718e-03	k: 1530	n:420000
SPOPL   420000 perm   162 sec   (2598 perm/sec)   p_kst 3.642857e-03   p_cons 1.279190e-01   p_joint 2.197619e-03

Joint ci ratio: 1.302400e-01	ci left: 1.965377e-03	ci right 2.241401e-03	k: 903	n:430000
Cons ci ratio: 1.560158e-02	ci left: 1.270190e-01	ci right 1.290186e-01	k: 55047	n:430000
KS ci ratio: 9.900447e-02	ci left: 3.452662e-03	ci right 3.814542e-03	k: 1561	n:430000
SPOPL   430000 perm   167 sec   (2569 perm/sec)   p_kst 3.630233e-03   p_cons 1.280163e-01   p_joint 2.100000e-03

Joint ci ratio: 1.284750e-01	ci left: 1.975689e-03	ci right 2.249115e-03	k: 928	n:440000
Cons ci ratio: 1.541890e-02	ci left: 1.270934e-01	ci right 1.290705e-01	k: 56355	n:440000
KS ci ratio: 9.739481e-02	ci left: 3.489475e-03	ci right 3.848928e-03	k: 1613	n:440000
SPOPL   440000 perm   173 sec   (2542 perm/sec)   p_kst 3.665909e-03   p_cons 1.280795e-01   p_joint 2.109091e-03

Joint ci ratio: 1.252756e-01	ci left: 2.035070e-03	ci right 2.309180e-03	k: 976	n:450000
Cons ci ratio: 1.525403e-02	ci left: 1.269964e-01	ci right 1.289506e-01	k: 57587	n:450000
KS ci ratio: 9.635585e-02	ci left: 3.487824e-03	ci right 3.843058e-03	k: 1648	n:450000
SPOPL   450000 perm   179 sec   (2516 perm/sec)   p_kst 3.662222e-03   p_cons 1.279711e-01   p_joint 2.168889e-03

Joint ci ratio: 1.196983e-01	ci left: 2.186822e-03	ci right 2.467331e-03	k: 1069	n:460000
Cons ci ratio: 1.508845e-02	ci left: 1.269903e-01	ci right 1.289231e-01	k: 58859	n:460000
KS ci ratio: 9.552038e-02	ci left: 3.473532e-03	ci right 3.824070e-03	k: 1677	n:460000
SPOPL   460000 perm   185 sec   (2490 perm/sec)   p_kst 3.645652e-03   p_cons 1.279543e-01   p_joint 2.323913e-03

Joint ci ratio: 1.182156e-01	ci left: 2.196032e-03	ci right 2.473990e-03	k: 1096	n:470000
Cons ci ratio: 1.492673e-02	ci left: 1.270058e-01	ci right 1.289179e-01	k: 60141	n:470000
KS ci ratio: 9.445668e-02	ci left: 3.478558e-03	ci right 3.825478e-03	k: 1715	n:470000
SPOPL   470000 perm   191 sec   (2463 perm/sec)   p_kst 3.648936e-03   p_cons 1.279596e-01   p_joint 2.331915e-03

Joint ci ratio: 1.169432e-01	ci left: 2.198811e-03	ci right 2.473918e-03	k: 1120	n:480000
Cons ci ratio: 1.476954e-02	ci left: 1.270291e-01	ci right 1.289212e-01	k: 61427	n:480000
KS ci ratio: 9.353485e-02	ci left: 3.475256e-03	ci right 3.818279e-03	k: 1749	n:480000
SPOPL   480000 perm   197 sec   (2438 perm/sec)   p_kst 3.643750e-03   p_cons 1.279729e-01   p_joint 2.333333e-03

Joint ci ratio: 1.191502e-01	ci left: 2.072726e-03	ci right 2.337296e-03	k: 1079	n:490000
Cons ci ratio: 1.462150e-02	ci left: 1.269864e-01	ci right 1.288588e-01	k: 62681	n:490000
KS ci ratio: 9.258742e-02	ci left: 3.476091e-03	ci right 3.815533e-03	k: 1785	n:490000
SPOPL   490000 perm   203 sec   (2414 perm/sec)   p_kst 3.642857e-03   p_cons 1.279204e-01   p_joint 2.202041e-03

Joint ci ratio: 1.181161e-01	ci left: 2.068144e-03	ci right 2.329678e-03	k: 1098	n:500000
Cons ci ratio: 1.447769e-02	ci left: 1.269475e-01	ci right 1.288008e-01	k: 63936	n:500000
KS ci ratio: 9.161775e-02	ci left: 3.480819e-03	ci right 3.816972e-03	k: 1823	n:500000
SPOPL   500000 perm   209 sec   (2388 perm/sec)   p_kst 3.646000e-03   p_cons 1.278720e-01   p_joint 2.196000e-03

Joint ci ratio: 1.169513e-01	ci left: 2.069461e-03	ci right 2.328403e-03	k: 1120	n:510000
Cons ci ratio: 1.433061e-02	ci left: 1.270256e-01	ci right 1.288610e-01	k: 65250	n:510000
KS ci ratio: 9.065349e-02	ci left: 3.487296e-03	ci right 3.820342e-03	k: 1862	n:510000
SPOPL   510000 perm   216 sec   (2364 perm/sec)   p_kst 3.650980e-03   p_cons 1.279412e-01   p_joint 2.196078e-03

Joint ci ratio: 1.166414e-01	ci left: 2.040863e-03	ci right 2.295503e-03	k: 1126	n:520000
Cons ci ratio: 1.418352e-02	ci left: 1.271698e-01	ci right 1.289882e-01	k: 66600	n:520000
KS ci ratio: 8.976643e-02	ci left: 3.489782e-03	ci right 3.819633e-03	k: 1899	n:520000
SPOPL   520000 perm   222 sec   (2341 perm/sec)   p_kst 3.651923e-03   p_cons 1.280769e-01   p_joint 2.165385e-03

Joint ci ratio: 1.153684e-01	ci left: 2.048158e-03	ci right 2.300729e-03	k: 1151	n:530000
Cons ci ratio: 1.405356e-02	ci left: 1.271073e-01	ci right 1.289081e-01	k: 67843	n:530000
KS ci ratio: 8.881293e-02	ci left: 3.499569e-03	ci right 3.826649e-03	k: 1940	n:530000
SPOPL   530000 perm   229 sec   (2318 perm/sec)   p_kst 3.660377e-03   p_cons 1.280057e-01   p_joint 2.171698e-03

Joint ci ratio: 9.994366e-02	ci left: 2.698728e-03	ci right 2.984425e-03	k: 1533	n:540000
Cons ci ratio: 1.391914e-02	ci left: 1.271746e-01	ci right 1.289590e-01	k: 69155	n:540000
KS ci ratio: 8.802300e-02	ci left: 3.498143e-03	ci right 3.822033e-03	k: 1975	n:540000
SPOPL   540000 perm   235 sec   (2295 perm/sec)   p_kst 3.657407e-03   p_cons 1.280648e-01   p_joint 2.838889e-03

Outputting figure to mutsig2_images.part000000000166/SPOPL.6_1219_540000_0.0036574_0.12806_0.0028389.png
                gene_name: SPOPL
               theta_stop: 0.100 
                    nperm: 540000 
                     p_ks: 0.0037 
        ci_ks_bounds_left: 0.0035 
       ci_ks_bounds_right: 0.0038 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.0028 
     ci_joint_bounds_left: 0.0027 
    ci_joint_bounds_right: 0.0030 

Current progress: 20 percent done.
SPTBN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.188344e-02	ci left: 7.539324e-01	ci right 7.707145e-01	k: 7624	n:10000
Cons ci ratio: 9.661964e-03	ci left: 9.380680e-01	ci right 9.472720e-01	k: 9428	n:10000
KS ci ratio: 4.086781e-02	ci left: 4.692660e-01	ci right 4.889461e-01	k: 4791	n:10000
SPTBN1   10000 perm   3 sec   (3368 perm/sec)   p_kst 4.791000e-01   p_cons 9.428000e-01   p_joint 7.624000e-01

Outputting figure to mutsig2_images.part000000000166/SPTBN1.6_7435_10000_0.4791_0.9428_0.7624.png
                gene_name: SPTBN1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 22 percent done.
SRGAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.694478e-02	ci left: 6.698493e-01	ci right 6.882463e-01	k: 6791	n:10000
Cons ci ratio: 5.875724e-02	ci left: 2.988593e-01	ci right 3.170527e-01	k: 3079	n:10000
KS ci ratio: 1.803054e-02	ci left: 8.178151e-01	ci right 8.327949e-01	k: 8254	n:10000
SRGAP1   10000 perm   2 sec   (4532 perm/sec)   p_kst 8.254000e-01   p_cons 3.079000e-01   p_joint 6.791000e-01

Outputting figure to mutsig2_images.part000000000166/SRGAP1.6_3346_10000_0.8254_0.3079_0.6791.png
                gene_name: SRGAP1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 24 percent done.
SR140
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.024951e-01	ci left: 1.210221e-01	ci right 1.341957e-01	k: 1275	n:10000
Cons ci ratio: 6.379177e-02	ci left: 2.652752e-01	ci right 2.828566e-01	k: 2740	n:10000
KS ci ratio: 8.876129e-02	ci left: 1.559077e-01	ci right 1.704891e-01	k: 1631	n:10000
SR140   10000 perm   2 sec   (4506 perm/sec)   p_kst 1.631000e-01   p_cons 2.740000e-01   p_joint 1.275000e-01

Joint ci ratio: 6.022457e-02	ci left: 1.695095e-01	ci right 1.800852e-01	k: 3495	n:20000
Cons ci ratio: 4.301041e-02	ci left: 2.870951e-01	ci right 2.997650e-01	k: 5868	n:20000
KS ci ratio: 6.384310e-02	ci left: 1.535128e-01	ci right 1.636867e-01	k: 3171	n:20000
SR140   20000 perm   5 sec   (4115 perm/sec)   p_kst 1.585500e-01   p_cons 2.934000e-01   p_joint 1.747500e-01

Outputting figure to mutsig2_images.part000000000166/SR140.5_3202_20000_0.15855_0.2934_0.17475.png
                gene_name: SR140
               theta_stop: 0.064 
                    nperm: 20000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 27 percent done.
SRCIN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.002437e-02	ci left: 2.301744e-01	ci right 2.469782e-01	k: 2385	n:10000
Cons ci ratio: 8.241153e-02	ci left: 1.768418e-01	ci right 1.921425e-01	k: 1844	n:10000
KS ci ratio: 4.483114e-02	ci left: 4.234587e-01	ci right 4.429803e-01	k: 4332	n:10000
SRCIN1   10000 perm   2 sec   (4400 perm/sec)   p_kst 4.332000e-01   p_cons 1.844000e-01   p_joint 2.385000e-01

Outputting figure to mutsig2_images.part000000000166/SRCIN1.5_3628_10000_0.4332_0.1844_0.2385.png
                gene_name: SRCIN1
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 29 percent done.
SRGAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.075757e-02	ci left: 6.092978e-01	ci right 6.284329e-01	k: 6189	n:10000
KS ci ratio: 2.357332e-02	ci left: 7.256263e-01	ci right 7.430370e-01	k: 7344	n:10000
SRGAP2   10000 perm   2 sec   (4619 perm/sec)   p_kst 7.344000e-01   p_cons 6.189000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000166/SRGAP2.5_3040_10000_0.7344_0.6189_1.png
                gene_name: SRGAP2
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 32 percent done.
SRGAP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.434813e-02	ci left: 8.754132e-01	ci right 8.881634e-01	k: 8819	n:10000
KS ci ratio: 2.177474e-02	ci left: 7.557537e-01	ci right 7.724921e-01	k: 7642	n:10000
SRGAP3   10000 perm   2 sec   (4696 perm/sec)   p_kst 7.642000e-01   p_cons 8.819000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000166/SRGAP3.5_3423_10000_0.7642_0.8819_1.png
                gene_name: SRGAP3
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 34 percent done.
SPNS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.099081e-02	ci left: 4.677677e-01	ci right 4.874453e-01	k: 4776	n:10000
Cons ci ratio: 1.991862e-02	ci left: 7.867494e-01	ci right 8.026785e-01	k: 7948	n:10000
KS ci ratio: 6.070122e-02	ci left: 2.852798e-01	ci right 3.032402e-01	k: 2942	n:10000
SPNS1   10000 perm   2 sec   (5337 perm/sec)   p_kst 2.942000e-01   p_cons 7.948000e-01   p_joint 4.776000e-01

Outputting figure to mutsig2_images.part000000000166/SPNS1.4_1635_10000_0.2942_0.7948_0.4776.png
                gene_name: SPNS1
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 37 percent done.
SPRED3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.004989e-02	ci left: 4.793568e-01	ci right 4.990495e-01	k: 4892	n:10000
Cons ci ratio: 3.653334e-02	ci left: 5.252653e-01	ci right 5.449142e-01	k: 5351	n:10000
KS ci ratio: 4.629413e-02	ci left: 4.078097e-01	ci right 4.272384e-01	k: 4175	n:10000
SPRED3   10000 perm   2 sec   (5784 perm/sec)   p_kst 4.175000e-01   p_cons 5.351000e-01   p_joint 4.892000e-01

Outputting figure to mutsig2_images.part000000000166/SPRED3.4_1293_10000_0.4175_0.5351_0.4892.png
                gene_name: SPRED3
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 39 percent done.
SPRY3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.338274e-01	ci left: 1.133070e-02	ci right 1.595903e-02	k: 135	n:10000
Cons ci ratio: 5.014647e-02	ci left: 3.696768e-01	ci right 3.887936e-01	k: 3792	n:10000
KS ci ratio: 1.086451e+00	ci left: 6.202064e-04	ci right 2.095219e-03	k: 12	n:10000
SPRY3   10000 perm   2 sec   (6026 perm/sec)   p_kst 1.200000e-03   p_cons 3.792000e-01   p_joint 1.350000e-02

Joint ci ratio: 3.597902e-01	ci left: 4.840441e-03	ci right 7.006997e-03	k: 117	n:20000
Cons ci ratio: 3.582292e-02	ci left: 3.677361e-01	ci right 3.812004e-01	k: 7489	n:20000
KS ci ratio: 7.996665e-01	ci left: 7.291366e-04	ci right 1.725068e-03	k: 23	n:20000
SPRY3   20000 perm   4 sec   (5321 perm/sec)   p_kst 1.150000e-03   p_cons 3.744500e-01   p_joint 5.850000e-03

Joint ci ratio: 4.933466e-01	ci left: 1.584857e-03	ci right 2.648601e-03	k: 62	n:30000
Cons ci ratio: 2.813697e-02	ci left: 3.872676e-01	ci right 3.983532e-01	k: 11784	n:30000
KS ci ratio: 6.440358e-01	ci left: 8.406024e-04	ci right 1.660923e-03	k: 36	n:30000
SPRY3   30000 perm   6 sec   (5062 perm/sec)   p_kst 1.200000e-03   p_cons 3.928000e-01   p_joint 2.066667e-03

Joint ci ratio: 1.998665e-01	ci left: 8.572620e-03	ci right 1.049959e-02	k: 380	n:40000
Cons ci ratio: 2.438050e-02	ci left: 3.877600e-01	ci right 3.973556e-01	k: 15702	n:40000
KS ci ratio: 5.596499e-01	ci left: 8.849137e-04	ci right 1.590715e-03	k: 48	n:40000
SPRY3   40000 perm   8 sec   (4882 perm/sec)   p_kst 1.200000e-03   p_cons 3.925500e-01   p_joint 9.500000e-03

Joint ci ratio: 2.024831e-01	ci left: 6.686484e-03	ci right 8.211540e-03	k: 371	n:50000
Cons ci ratio: 2.183197e-02	ci left: 3.877172e-01	ci right 3.962953e-01	k: 19600	n:50000
KS ci ratio: 5.015933e-01	ci left: 9.158475e-04	ci right 1.544372e-03	k: 60	n:50000
SPRY3   50000 perm   11 sec   (4734 perm/sec)   p_kst 1.200000e-03   p_cons 3.920000e-01   p_joint 7.420000e-03

Joint ci ratio: 2.051216e-01	ci left: 5.429353e-03	ci right 6.685813e-03	k: 362	n:60000
Cons ci ratio: 1.996967e-02	ci left: 3.871424e-01	ci right 3.949682e-01	k: 23463	n:60000
KS ci ratio: 4.716372e-01	ci left: 8.801818e-04	ci right 1.436552e-03	k: 68	n:60000
SPRY3   60000 perm   13 sec   (4612 perm/sec)   p_kst 1.133333e-03   p_cons 3.910500e-01   p_joint 6.033333e-03

Joint ci ratio: 2.200174e-01	ci left: 4.017668e-03	ci right 5.024084e-03	k: 315	n:70000
Cons ci ratio: 1.843390e-02	ci left: 3.888372e-01	ci right 3.960860e-01	k: 27472	n:70000
KS ci ratio: 4.326349e-01	ci left: 9.190414e-04	ci right 1.438021e-03	k: 81	n:70000
SPRY3   70000 perm   16 sec   (4507 perm/sec)   p_kst 1.157143e-03   p_cons 3.924571e-01   p_joint 4.500000e-03

Joint ci ratio: 2.081784e-01	ci left: 3.953160e-03	ci right 4.883343e-03	k: 352	n:80000
Cons ci ratio: 1.721161e-02	ci left: 3.899502e-01	ci right 3.967326e-01	k: 31467	n:80000
KS ci ratio: 4.224746e-01	ci left: 8.487727e-04	ci right 1.313633e-03	k: 85	n:80000
SPRY3   80000 perm   18 sec   (4399 perm/sec)   p_kst 1.062500e-03   p_cons 3.933375e-01   p_joint 4.400000e-03

Joint ci ratio: 2.115650e-01	ci left: 3.398016e-03	ci right 4.212258e-03	k: 341	n:90000
Cons ci ratio: 1.623387e-02	ci left: 3.899512e-01	ci right 3.963445e-01	k: 35383	n:90000
KS ci ratio: 3.998677e-01	ci left: 8.540888e-04	ci right 1.290210e-03	k: 95	n:90000
SPRY3   90000 perm   21 sec   (4307 perm/sec)   p_kst 1.055556e-03   p_cons 3.931444e-01   p_joint 3.788889e-03

Joint ci ratio: 2.576177e-01	ci left: 2.012618e-03	ci right 2.616829e-03	k: 230	n:100000
Cons ci ratio: 1.538517e-02	ci left: 3.906001e-01	ci right 3.966661e-01	k: 39363	n:100000
KS ci ratio: 3.860482e-01	ci left: 8.317623e-04	ci right 1.238075e-03	k: 102	n:100000
SPRY3   100000 perm   24 sec   (4215 perm/sec)   p_kst 1.020000e-03   p_cons 3.936300e-01   p_joint 2.300000e-03

Joint ci ratio: 2.245155e-01	ci left: 2.453449e-03	ci right 3.082314e-03	k: 303	n:110000
Cons ci ratio: 1.466092e-02	ci left: 3.910108e-01	ci right 3.967948e-01	k: 43329	n:110000
KS ci ratio: 3.752801e-01	ci left: 8.054719e-04	ci right 1.185268e-03	k: 108	n:110000
SPRY3   110000 perm   27 sec   (4132 perm/sec)   p_kst 9.818182e-04   p_cons 3.939000e-01   p_joint 2.754545e-03

Joint ci ratio: 2.209279e-01	ci left: 2.327662e-03	ci right 2.913454e-03	k: 313	n:120000
Cons ci ratio: 1.401256e-02	ci left: 3.919579e-01	ci right 3.974972e-01	k: 47367	n:120000
KS ci ratio: 3.622259e-01	ci left: 7.988391e-04	ci right 1.159313e-03	k: 116	n:120000
SPRY3   120000 perm   30 sec   (4058 perm/sec)   p_kst 9.666667e-04   p_cons 3.947250e-01   p_joint 2.608333e-03

Joint ci ratio: 1.427241e-01	ci left: 5.357323e-03	ci right 6.188033e-03	k: 749	n:130000
Cons ci ratio: 1.346941e-02	ci left: 3.918341e-01	ci right 3.971553e-01	k: 51284	n:130000
KS ci ratio: 3.410176e-01	ci left: 8.425957e-04	ci right 1.195656e-03	k: 131	n:130000
SPRY3   130000 perm   33 sec   (3982 perm/sec)   p_kst 1.007692e-03   p_cons 3.944923e-01   p_joint 5.761538e-03

Joint ci ratio: 1.445076e-01	ci left: 4.850613e-03	ci right 5.612957e-03	k: 731	n:140000
Cons ci ratio: 1.297304e-02	ci left: 3.921668e-01	ci right 3.972947e-01	k: 55262	n:140000
KS ci ratio: 3.335269e-01	ci left: 8.216368e-04	ci right 1.156728e-03	k: 137	n:140000
SPRY3   140000 perm   36 sec   (3913 perm/sec)   p_kst 9.785714e-04   p_cons 3.947286e-01   p_joint 5.221429e-03

Joint ci ratio: 1.426838e-01	ci left: 4.649319e-03	ci right 5.370018e-03	k: 750	n:150000
Cons ci ratio: 1.254353e-02	ci left: 3.918589e-01	ci right 3.968118e-01	k: 59150	n:150000
KS ci ratio: 3.209783e-01	ci left: 8.341730e-04	ci right 1.158947e-03	k: 148	n:150000
SPRY3   150000 perm   39 sec   (3843 perm/sec)   p_kst 9.866667e-04   p_cons 3.943333e-01   p_joint 5.000000e-03

Joint ci ratio: 1.395667e-01	ci left: 4.563720e-03	ci right 5.254408e-03	k: 784	n:160000
Cons ci ratio: 1.214290e-02	ci left: 3.920291e-01	ci right 3.968247e-01	k: 63108	n:160000
KS ci ratio: 3.136972e-01	ci left: 8.223024e-04	ci right 1.133737e-03	k: 155	n:160000
SPRY3   160000 perm   42 sec   (3780 perm/sec)   p_kst 9.687500e-04   p_cons 3.944250e-01   p_joint 4.900000e-03

Joint ci ratio: 1.465998e-01	ci left: 3.881115e-03	ci right 4.500687e-03	k: 711	n:170000
Cons ci ratio: 1.178445e-02	ci left: 3.919347e-01	ci right 3.965866e-01	k: 67024	n:170000
KS ci ratio: 3.078366e-01	ci left: 8.064726e-04	ci right 1.105086e-03	k: 161	n:170000
SPRY3   170000 perm   46 sec   (3716 perm/sec)   p_kst 9.470588e-04   p_cons 3.942588e-01   p_joint 4.182353e-03

Joint ci ratio: 1.509343e-01	ci left: 3.451488e-03	ci right 4.020235e-03	k: 671	n:180000
Cons ci ratio: 1.145225e-02	ci left: 3.920080e-01	ci right 3.965287e-01	k: 70968	n:180000
KS ci ratio: 3.005074e-01	ci left: 8.027215e-04	ci right 1.091519e-03	k: 169	n:180000
SPRY3   180000 perm   49 sec   (3653 perm/sec)   p_kst 9.388889e-04   p_cons 3.942667e-01   p_joint 3.727778e-03

Joint ci ratio: 1.526687e-01	ci left: 3.193849e-03	ci right 3.726741e-03	k: 656	n:190000
Cons ci ratio: 1.114812e-02	ci left: 3.920122e-01	ci right 3.964121e-01	k: 74900	n:190000
KS ci ratio: 2.912317e-01	ci left: 8.140727e-04	ci right 1.096248e-03	k: 180	n:190000
SPRY3   190000 perm   53 sec   (3594 perm/sec)   p_kst 9.473684e-04   p_cons 3.942105e-01   p_joint 3.452632e-03

Joint ci ratio: 1.547031e-01	ci left: 2.952397e-03	ci right 3.452174e-03	k: 639	n:200000
Cons ci ratio: 1.087030e-02	ci left: 3.918725e-01	ci right 3.961605e-01	k: 78803	n:200000
KS ci ratio: 2.835051e-01	ci left: 8.197664e-04	ci right 1.095029e-03	k: 190	n:200000
SPRY3   200000 perm   57 sec   (3539 perm/sec)   p_kst 9.500000e-04   p_cons 3.940150e-01   p_joint 3.195000e-03

Joint ci ratio: 1.545938e-01	ci left: 2.816368e-03	ci right 3.292751e-03	k: 640	n:210000
Cons ci ratio: 1.060443e-02	ci left: 3.920995e-01	ci right 3.962844e-01	k: 82780	n:210000
KS ci ratio: 2.690901e-01	ci left: 8.738101e-04	ci right 1.149786e-03	k: 211	n:210000
SPRY3   210000 perm   60 sec   (3485 perm/sec)   p_kst 1.004762e-03   p_cons 3.941905e-01   p_joint 3.047619e-03

Joint ci ratio: 1.532910e-01	ci left: 2.736417e-03	ci right 3.195016e-03	k: 651	n:220000
Cons ci ratio: 1.036160e-02	ci left: 3.921026e-01	ci right 3.961911e-01	k: 86712	n:220000
KS ci ratio: 2.629598e-01	ci left: 8.765153e-04	ci right 1.146001e-03	k: 221	n:220000
SPRY3   220000 perm   64 sec   (3435 perm/sec)   p_kst 1.004545e-03   p_cons 3.941455e-01   p_joint 2.959091e-03

Joint ci ratio: 1.317397e-01	ci left: 3.582081e-03	ci right 4.091418e-03	k: 881	n:230000
Cons ci ratio: 1.013740e-02	ci left: 3.919805e-01	ci right 3.959787e-01	k: 90615	n:230000
KS ci ratio: 2.623748e-01	ci left: 8.424654e-04	ci right 1.100812e-03	k: 222	n:230000
SPRY3   230000 perm   68 sec   (3383 perm/sec)   p_kst 9.652174e-04   p_cons 3.939783e-01   p_joint 3.830435e-03

Joint ci ratio: 1.360764e-01	ci left: 3.211294e-03	ci right 3.684156e-03	k: 826	n:240000
Cons ci ratio: 9.920043e-03	ci left: 3.922108e-01	ci right 3.961251e-01	k: 94600	n:240000
KS ci ratio: 2.600559e-01	ci left: 8.229370e-04	ci right 1.072702e-03	k: 226	n:240000
SPRY3   240000 perm   72 sec   (3332 perm/sec)   p_kst 9.416667e-04   p_cons 3.941667e-01   p_joint 3.441667e-03

Joint ci ratio: 1.339101e-01	ci left: 3.187192e-03	ci right 3.648439e-03	k: 853	n:250000
Cons ci ratio: 9.727657e-03	ci left: 3.918560e-01	ci right 3.956904e-01	k: 98443	n:250000
KS ci ratio: 2.561379e-01	ci left: 8.162079e-04	ci right 1.059602e-03	k: 233	n:250000
SPRY3   250000 perm   76 sec   (3283 perm/sec)   p_kst 9.320000e-04   p_cons 3.937720e-01   p_joint 3.412000e-03

Joint ci ratio: 1.403281e-01	ci left: 2.782281e-03	ci right 3.205841e-03	k: 777	n:260000
Cons ci ratio: 9.876654e-03	ci left: 3.754171e-01	ci right 3.791472e-01	k: 98093	n:260000
KS ci ratio: 2.513501e-01	ci left: 8.172296e-04	ci right 1.055660e-03	k: 242	n:260000
SPRY3   260000 perm   80 sec   (3237 perm/sec)   p_kst 9.307692e-04   p_cons 3.772808e-01   p_joint 2.988462e-03

Joint ci ratio: 1.473379e-01	ci left: 2.422124e-03	ci right 2.810897e-03	k: 705	n:270000
Cons ci ratio: 9.692168e-03	ci left: 3.754453e-01	ci right 3.791055e-01	k: 101864	n:270000
KS ci ratio: 2.483049e-01	ci left: 8.077923e-04	ci right 1.040173e-03	k: 248	n:270000
SPRY3   270000 perm   85 sec   (3191 perm/sec)   p_kst 9.185185e-04   p_cons 3.772741e-01   p_joint 2.611111e-03

Joint ci ratio: 1.439113e-01	ci left: 2.452627e-03	ci right 2.836354e-03	k: 739	n:280000
Cons ci ratio: 9.520398e-03	ci left: 3.753364e-01	ci right 3.789304e-01	k: 105597	n:280000
KS ci ratio: 2.439356e-01	ci left: 8.091033e-04	ci right 1.037145e-03	k: 257	n:280000
SPRY3   280000 perm   89 sec   (3148 perm/sec)   p_kst 9.178571e-04   p_cons 3.771321e-01   p_joint 2.639286e-03

Joint ci ratio: 1.430483e-01	ci left: 2.397969e-03	ci right 2.770703e-03	k: 748	n:290000
Cons ci ratio: 9.353053e-03	ci left: 3.754561e-01	ci right 3.789877e-01	k: 109394	n:290000
KS ci ratio: 2.388953e-01	ci left: 8.168404e-04	ci right 1.041602e-03	k: 268	n:290000
SPRY3   290000 perm   93 sec   (3107 perm/sec)   p_kst 9.241379e-04   p_cons 3.772207e-01   p_joint 2.579310e-03

Joint ci ratio: 1.405375e-01	ci left: 2.404845e-03	ci right 2.771536e-03	k: 775	n:300000
Cons ci ratio: 9.191102e-03	ci left: 3.757282e-01	ci right 3.792008e-01	k: 113239	n:300000
KS ci ratio: 2.358473e-01	ci left: 8.115578e-04	ci right 1.031600e-03	k: 275	n:300000
SPRY3   300000 perm   98 sec   (3066 perm/sec)   p_kst 9.166667e-04   p_cons 3.774633e-01   p_joint 2.583333e-03

Joint ci ratio: 1.389371e-01	ci left: 2.383302e-03	ci right 2.742227e-03	k: 793	n:310000
Cons ci ratio: 9.042119e-03	ci left: 3.757318e-01	ci right 3.791479e-01	k: 117006	n:310000
KS ci ratio: 2.312828e-01	ci left: 8.187866e-04	ci right 1.035879e-03	k: 286	n:310000
SPRY3   310000 perm   102 sec   (3027 perm/sec)   p_kst 9.225806e-04   p_cons 3.774387e-01   p_joint 2.558065e-03

Joint ci ratio: 1.457224e-01	ci left: 2.091808e-03	ci right 2.423559e-03	k: 721	n:320000
Cons ci ratio: 8.902462e-03	ci left: 3.756139e-01	ci right 3.789758e-01	k: 120734	n:320000
KS ci ratio: 2.269734e-01	ci left: 8.256020e-04	ci right 1.039852e-03	k: 297	n:320000
SPRY3   320000 perm   107 sec   (2988 perm/sec)   p_kst 9.281250e-04   p_cons 3.772937e-01   p_joint 2.253125e-03

Joint ci ratio: 1.432627e-01	ci left: 2.101440e-03	ci right 2.428611e-03	k: 746	n:330000
Cons ci ratio: 8.765972e-03	ci left: 3.756700e-01	ci right 3.789806e-01	k: 124517	n:330000
KS ci ratio: 2.218210e-01	ci left: 8.406244e-04	ci right 1.053145e-03	k: 311	n:330000
SPRY3   330000 perm   112 sec   (2951 perm/sec)   p_kst 9.424242e-04   p_cons 3.773242e-01   p_joint 2.260606e-03

Joint ci ratio: 1.526693e-01	ci left: 1.787527e-03	ci right 2.085770e-03	k: 657	n:340000
Cons ci ratio: 8.639519e-03	ci left: 3.755087e-01	ci right 3.787699e-01	k: 128227	n:340000
KS ci ratio: 2.183493e-01	ci left: 8.436908e-04	ci right 1.053200e-03	k: 321	n:340000
SPRY3   340000 perm   117 sec   (2914 perm/sec)   p_kst 9.441176e-04   p_cons 3.771382e-01   p_joint 1.932353e-03

Joint ci ratio: 1.552966e-01	ci left: 1.676012e-03	ci right 1.960909e-03	k: 635	n:350000
Cons ci ratio: 8.517296e-03	ci left: 3.754169e-01	ci right 3.786309e-01	k: 131958	n:350000
KS ci ratio: 2.156868e-01	ci left: 8.412001e-04	ci right 1.047207e-03	k: 329	n:350000
SPRY3   350000 perm   122 sec   (2876 perm/sec)   p_kst 9.400000e-04   p_cons 3.770229e-01   p_joint 1.814286e-03

Joint ci ratio: 1.519849e-01	ci left: 1.704246e-03	ci right 1.987203e-03	k: 663	n:360000
Cons ci ratio: 8.397733e-03	ci left: 3.754637e-01	ci right 3.786327e-01	k: 135737	n:360000
KS ci ratio: 2.115590e-01	ci left: 8.520132e-04	ci right 1.056157e-03	k: 342	n:360000
SPRY3   360000 perm   127 sec   (2839 perm/sec)   p_kst 9.500000e-04   p_cons 3.770472e-01   p_joint 1.841667e-03

Joint ci ratio: 1.548173e-01	ci left: 1.595803e-03	ci right 1.866151e-03	k: 639	n:370000
Cons ci ratio: 8.278971e-03	ci left: 3.757405e-01	ci right 3.788668e-01	k: 139602	n:370000
KS ci ratio: 2.094334e-01	ci left: 8.469073e-04	ci right 1.047527e-03	k: 349	n:370000
SPRY3   370000 perm   132 sec   (2803 perm/sec)   p_kst 9.432432e-04   p_cons 3.773027e-01   p_joint 1.727027e-03

Joint ci ratio: 1.533871e-01	ci left: 1.584168e-03	ci right 1.849838e-03	k: 651	n:380000
Cons ci ratio: 8.166295e-03	ci left: 3.759347e-01	ci right 3.790198e-01	k: 143441	n:380000
KS ci ratio: 2.073706e-01	ci left: 8.420797e-04	ci right 1.039342e-03	k: 356	n:380000
SPRY3   380000 perm   137 sec   (2765 perm/sec)   p_kst 9.368421e-04   p_cons 3.774763e-01   p_joint 1.713158e-03

Joint ci ratio: 1.523409e-01	ci left: 1.565742e-03	ci right 1.826367e-03	k: 660	n:390000
Cons ci ratio: 8.062625e-03	ci left: 3.758553e-01	ci right 3.789004e-01	k: 147177	n:390000
KS ci ratio: 2.045258e-01	ci left: 8.448068e-04	ci right 1.039654e-03	k: 366	n:390000
SPRY3   390000 perm   143 sec   (2734 perm/sec)   p_kst 9.384615e-04   p_cons 3.773769e-01   p_joint 1.692308e-03

Joint ci ratio: 1.128492e-01	ci left: 2.837735e-03	ci right 3.179527e-03	k: 1202	n:400000
Cons ci ratio: 7.962508e-03	ci left: 3.757975e-01	ci right 3.788042e-01	k: 150920	n:400000
KS ci ratio: 2.023328e-01	ci left: 8.426678e-04	ci right 1.034680e-03	k: 374	n:400000
SPRY3   400000 perm   148 sec   (2701 perm/sec)   p_kst 9.350000e-04   p_cons 3.773000e-01   p_joint 3.005000e-03

Joint ci ratio: 1.136137e-01	ci left: 2.730594e-03	ci right 3.061859e-03	k: 1186	n:410000
Cons ci ratio: 7.865786e-03	ci left: 3.757575e-01	ci right 3.787272e-01	k: 154669	n:410000
KS ci ratio: 2.007341e-01	ci left: 8.360103e-04	ci right 1.024816e-03	k: 380	n:410000
SPRY3   410000 perm   154 sec   (2669 perm/sec)   p_kst 9.268293e-04   p_cons 3.772415e-01   p_joint 2.892683e-03

Joint ci ratio: 1.191835e-01	ci left: 2.415896e-03	ci right 2.724363e-03	k: 1078	n:420000
Cons ci ratio: 7.770772e-03	ci left: 3.758242e-01	ci right 3.787584e-01	k: 158462	n:420000
KS ci ratio: 1.978972e-01	ci left: 8.409890e-04	ci right 1.027911e-03	k: 391	n:420000
SPRY3   420000 perm   159 sec   (2638 perm/sec)   p_kst 9.309524e-04   p_cons 3.772905e-01   p_joint 2.566667e-03

Joint ci ratio: 1.176663e-01	ci left: 2.422900e-03	ci right 2.728050e-03	k: 1106	n:430000
Cons ci ratio: 7.679652e-03	ci left: 3.758556e-01	ci right 3.787554e-01	k: 162241	n:430000
KS ci ratio: 1.959086e-01	ci left: 8.391185e-04	ci right 1.023527e-03	k: 399	n:430000
SPRY3   430000 perm   165 sec   (2608 perm/sec)   p_kst 9.279070e-04   p_cons 3.773047e-01   p_joint 2.572093e-03

Joint ci ratio: 1.164114e-01	ci left: 2.420783e-03	ci right 2.722191e-03	k: 1130	n:440000
Cons ci ratio: 7.589534e-03	ci left: 3.760174e-01	ci right 3.788843e-01	k: 166078	n:440000
KS ci ratio: 1.946965e-01	ci left: 8.308552e-04	ci right 1.012184e-03	k: 404	n:440000
SPRY3   440000 perm   171 sec   (2580 perm/sec)   p_kst 9.181818e-04   p_cons 3.774500e-01   p_joint 2.568182e-03

Joint ci ratio: 1.147979e-01	ci left: 2.436044e-03	ci right 2.734863e-03	k: 1162	n:450000
Cons ci ratio: 7.503899e-03	ci left: 3.760856e-01	ci right 3.789205e-01	k: 169876	n:450000
KS ci ratio: 1.916442e-01	ci left: 8.398840e-04	ci right 1.019975e-03	k: 417	n:450000
SPRY3   450000 perm   176 sec   (2551 perm/sec)   p_kst 9.266667e-04   p_cons 3.775022e-01   p_joint 2.582222e-03

Joint ci ratio: 1.136316e-01	ci left: 2.433770e-03	ci right 2.729073e-03	k: 1186	n:460000
Cons ci ratio: 7.421786e-03	ci left: 3.761075e-01	ci right 3.789114e-01	k: 173654	n:460000
KS ci ratio: 1.891709e-01	ci left: 8.443990e-04	ci right 1.022853e-03	k: 428	n:460000
SPRY3   460000 perm   182 sec   (2523 perm/sec)   p_kst 9.304348e-04   p_cons 3.775087e-01   p_joint 2.578261e-03

Joint ci ratio: 1.123144e-01	ci left: 2.439879e-03	ci right 2.732264e-03	k: 1214	n:470000
Cons ci ratio: 7.340382e-03	ci left: 3.762520e-01	ci right 3.790261e-01	k: 177490	n:470000
KS ci ratio: 1.865789e-01	ci left: 8.507645e-04	ci right 1.027821e-03	k: 440	n:470000
SPRY3   470000 perm   188 sec   (2496 perm/sec)   p_kst 9.361702e-04   p_cons 3.776383e-01   p_joint 2.582979e-03

Joint ci ratio: 1.113116e-01	ci left: 2.433599e-03	ci right 2.722457e-03	k: 1236	n:480000
Cons ci ratio: 7.262919e-03	ci left: 3.763053e-01	ci right 3.790504e-01	k: 181285	n:480000
KS ci ratio: 1.851160e-01	ci left: 8.469449e-04	ci right 1.021669e-03	k: 447	n:480000
SPRY3   480000 perm   194 sec   (2470 perm/sec)   p_kst 9.312500e-04   p_cons 3.776771e-01   p_joint 2.575000e-03

Joint ci ratio: 1.149091e-01	ci left: 2.233205e-03	ci right 2.507426e-03	k: 1160	n:490000
Cons ci ratio: 7.191197e-03	ci left: 3.761383e-01	ci right 3.788550e-01	k: 184973	n:490000
KS ci ratio: 1.836869e-01	ci left: 8.432865e-04	ci right 1.015764e-03	k: 454	n:490000
SPRY3   490000 perm   200 sec   (2444 perm/sec)   p_kst 9.265306e-04   p_cons 3.774959e-01   p_joint 2.367347e-03

Joint ci ratio: 1.165845e-01	ci left: 2.124445e-03	ci right 2.389375e-03	k: 1127	n:500000
Cons ci ratio: 7.119043e-03	ci left: 3.761441e-01	ci right 3.788334e-01	k: 188744	n:500000
KS ci ratio: 1.824882e-01	ci left: 8.378705e-04	ci right 1.007998e-03	k: 460	n:500000
SPRY3   500000 perm   207 sec   (2418 perm/sec)   p_kst 9.200000e-04   p_cons 3.774880e-01   p_joint 2.254000e-03

Joint ci ratio: 1.157164e-01	ci left: 2.115153e-03	ci right 2.376827e-03	k: 1144	n:510000
Cons ci ratio: 7.050223e-03	ci left: 3.760694e-01	ci right 3.787320e-01	k: 192474	n:510000
KS ci ratio: 1.805405e-01	ci left: 8.401587e-04	ci right 1.008731e-03	k: 470	n:510000
SPRY3   510000 perm   213 sec   (2394 perm/sec)   p_kst 9.215686e-04   p_cons 3.774000e-01   p_joint 2.243137e-03

Joint ci ratio: 1.192131e-01	ci left: 1.951273e-03	ci right 2.200481e-03	k: 1078	n:520000
Cons ci ratio: 6.982790e-03	ci left: 3.760361e-01	ci right 3.786730e-01	k: 196224	n:520000
KS ci ratio: 1.792140e-01	ci left: 8.368571e-04	ci right 1.003400e-03	k: 477	n:520000
SPRY3   520000 perm   219 sec   (2369 perm/sec)   p_kst 9.173077e-04   p_cons 3.773538e-01   p_joint 2.073077e-03

Joint ci ratio: 1.198290e-01	ci left: 1.894319e-03	ci right 2.137591e-03	k: 1067	n:530000
Cons ci ratio: 6.916394e-03	ci left: 3.760627e-01	ci right 3.786745e-01	k: 200005	n:530000
KS ci ratio: 1.777331e-01	ci left: 8.354874e-04	ci right 1.000236e-03	k: 485	n:530000
SPRY3   530000 perm   226 sec   (2346 perm/sec)   p_kst 9.150943e-04   p_cons 3.773679e-01   p_joint 2.013208e-03

Joint ci ratio: 1.185589e-01	ci left: 1.900562e-03	ci right 2.141868e-03	k: 1090	n:540000
Cons ci ratio: 6.853423e-03	ci left: 3.759810e-01	ci right 3.785684e-01	k: 203728	n:540000
KS ci ratio: 1.764671e-01	ci left: 8.324036e-04	ci right 9.952498e-04	k: 492	n:540000
SPRY3   540000 perm   233 sec   (2322 perm/sec)   p_kst 9.111111e-04   p_cons 3.772741e-01   p_joint 2.018519e-03

Joint ci ratio: 1.175399e-01	ci left: 1.899532e-03	ci right 2.138490e-03	k: 1109	n:550000
Cons ci ratio: 6.790827e-03	ci left: 3.759933e-01	ci right 3.785571e-01	k: 207501	n:550000
KS ci ratio: 1.745305e-01	ci left: 8.363906e-04	ci right 9.980318e-04	k: 503	n:550000
SPRY3   550000 perm   239 sec   (2299 perm/sec)   p_kst 9.145455e-04   p_cons 3.772745e-01   p_joint 2.016364e-03

Joint ci ratio: 1.166504e-01	ci left: 1.895079e-03	ci right 2.131549e-03	k: 1126	n:560000
Cons ci ratio: 6.730120e-03	ci left: 3.759910e-01	ci right 3.785317e-01	k: 211266	n:560000
KS ci ratio: 1.726562e-01	ci left: 8.402446e-04	ci right 1.000705e-03	k: 514	n:560000
SPRY3   560000 perm   246 sec   (2277 perm/sec)   p_kst 9.178571e-04   p_cons 3.772607e-01   p_joint 2.010714e-03

Joint ci ratio: 1.156289e-01	ci left: 1.895901e-03	ci right 2.130260e-03	k: 1146	n:570000
Cons ci ratio: 6.668398e-03	ci left: 3.761729e-01	ci right 3.786915e-01	k: 215136	n:570000
KS ci ratio: 1.713308e-01	ci left: 8.389344e-04	ci right 9.977877e-04	k: 522	n:570000
SPRY3   570000 perm   253 sec   (2256 perm/sec)   p_kst 9.157895e-04   p_cons 3.774316e-01   p_joint 2.010526e-03

Joint ci ratio: 1.225116e-01	ci left: 1.654096e-03	ci right 1.871619e-03	k: 1021	n:580000
Cons ci ratio: 6.609821e-03	ci left: 3.762436e-01	ci right 3.787404e-01	k: 218945	n:580000
KS ci ratio: 1.701960e-01	ci left: 8.360230e-04	ci right 9.931689e-04	k: 529	n:580000
SPRY3   580000 perm   259 sec   (2235 perm/sec)   p_kst 9.120690e-04   p_cons 3.774914e-01   p_joint 1.760345e-03

Joint ci ratio: 1.212717e-01	ci left: 1.660569e-03	ci right 1.876574e-03	k: 1042	n:590000
Cons ci ratio: 6.552903e-03	ci left: 3.763018e-01	ci right 3.787774e-01	k: 222748	n:590000
KS ci ratio: 1.687691e-01	ci left: 8.364604e-04	ci right 9.922362e-04	k: 538	n:590000
SPRY3   590000 perm   266 sec   (2215 perm/sec)   p_kst 9.118644e-04   p_cons 3.775390e-01   p_joint 1.766102e-03

Joint ci ratio: 1.095791e-01	ci left: 2.011680e-03	ci right 2.246502e-03	k: 1276	n:600000
Cons ci ratio: 6.497315e-03	ci left: 3.763664e-01	ci right 3.788214e-01	k: 226556	n:600000
KS ci ratio: 1.673775e-01	ci left: 8.368884e-04	ci right 9.913293e-04	k: 547	n:600000
SPRY3   600000 perm   273 sec   (2194 perm/sec)   p_kst 9.116667e-04   p_cons 3.775933e-01   p_joint 2.126667e-03

Joint ci ratio: 1.086891e-01	ci left: 2.012189e-03	ci right 2.245039e-03	k: 1297	n:610000
Cons ci ratio: 6.444197e-03	ci left: 3.763504e-01	ci right 3.787852e-01	k: 230316	n:610000
KS ci ratio: 1.654263e-01	ci left: 8.435932e-04	ci right 9.972758e-04	k: 560	n:610000
SPRY3   610000 perm   281 sec   (2174 perm/sec)   p_kst 9.180328e-04   p_cons 3.775672e-01   p_joint 2.126230e-03

Joint ci ratio: 1.079024e-01	ci left: 2.009549e-03	ci right 2.240304e-03	k: 1316	n:620000
Cons ci ratio: 6.391154e-03	ci left: 3.764237e-01	ci right 3.788388e-01	k: 234131	n:620000
KS ci ratio: 1.641151e-01	ci left: 8.439044e-04	ci right 9.963049e-04	k: 569	n:620000
SPRY3   620000 perm   288 sec   (2154 perm/sec)   p_kst 9.177419e-04   p_cons 3.776306e-01   p_joint 2.122581e-03

Joint ci ratio: 1.071326e-01	ci left: 2.006999e-03	ci right 2.235713e-03	k: 1335	n:630000
Cons ci ratio: 6.341455e-03	ci left: 3.763424e-01	ci right 3.787381e-01	k: 237850	n:630000
KS ci ratio: 1.634006e-01	ci left: 8.381201e-04	ci right 9.887523e-04	k: 574	n:630000
SPRY3   630000 perm   295 sec   (2134 perm/sec)   p_kst 9.111111e-04   p_cons 3.775397e-01   p_joint 2.119048e-03

Joint ci ratio: 1.076198e-01	ci left: 1.957390e-03	ci right 2.181530e-03	k: 1323	n:640000
Cons ci ratio: 6.291454e-03	ci left: 3.763715e-01	ci right 3.787484e-01	k: 241638	n:640000
KS ci ratio: 1.622757e-01	ci left: 8.370151e-04	ci right 9.863121e-04	k: 582	n:640000
SPRY3   640000 perm   303 sec   (2114 perm/sec)   p_kst 9.093750e-04   p_cons 3.775594e-01   p_joint 2.067188e-03

Joint ci ratio: 1.323551e-01	ci left: 1.258479e-03	ci right 1.438320e-03	k: 875	n:650000
Cons ci ratio: 6.034126e-03	ci left: 3.924843e-01	ci right 3.948613e-01	k: 255887	n:650000
KS ci ratio: 1.615848e-01	ci left: 8.315183e-04	ci right 9.791420e-04	k: 587	n:650000
SPRY3   650000 perm   310 sec   (2095 perm/sec)   p_kst 9.030769e-04   p_cons 3.936723e-01   p_joint 1.346154e-03

Joint ci ratio: 1.313100e-01	ci left: 1.259924e-03	ci right 1.438438e-03	k: 889	n:660000
Cons ci ratio: 5.987872e-03	ci left: 3.925225e-01	ci right 3.948814e-01	k: 259843	n:660000
KS ci ratio: 1.599604e-01	ci left: 8.363700e-04	ci right 9.832191e-04	k: 599	n:660000
SPRY3   660000 perm   318 sec   (2076 perm/sec)   p_kst 9.075758e-04   p_cons 3.937015e-01   p_joint 1.346970e-03

Joint ci ratio: 1.386837e-01	ci left: 1.108434e-03	ci right 1.275032e-03	k: 797	n:670000
Cons ci ratio: 5.943316e-03	ci left: 3.925075e-01	ci right 3.948487e-01	k: 263764	n:670000
KS ci ratio: 1.589047e-01	ci left: 8.353508e-04	ci right 9.809605e-04	k: 607	n:670000
SPRY3   670000 perm   326 sec   (2057 perm/sec)   p_kst 9.059701e-04   p_cons 3.936776e-01   p_joint 1.189552e-03

Joint ci ratio: 1.399192e-01	ci left: 1.072261e-03	ci right 1.234978e-03	k: 783	n:680000
Cons ci ratio: 5.899759e-03	ci left: 3.924915e-01	ci right 3.948153e-01	k: 267684	n:680000
KS ci ratio: 1.581268e-01	ci left: 8.315396e-04	ci right 9.757080e-04	k: 613	n:680000
SPRY3   680000 perm   334 sec   (2038 perm/sec)   p_kst 9.014706e-04   p_cons 3.936529e-01   p_joint 1.151471e-03

Joint ci ratio: 1.389479e-01	ci left: 1.072107e-03	ci right 1.233577e-03	k: 794	n:690000
Cons ci ratio: 5.857412e-03	ci left: 3.924542e-01	ci right 3.947612e-01	k: 271589	n:690000
KS ci ratio: 1.564785e-01	ci left: 8.375875e-04	ci right 9.811487e-04	k: 626	n:690000
SPRY3   690000 perm   341 sec   (2021 perm/sec)   p_kst 9.072464e-04   p_cons 3.936072e-01   p_joint 1.150725e-03

Joint ci ratio: 1.378254e-01	ci left: 1.074720e-03	ci right 1.235169e-03	k: 807	n:700000
Cons ci ratio: 5.815320e-03	ci left: 3.924710e-01	ci right 3.947613e-01	k: 275531	n:700000
KS ci ratio: 1.545186e-01	ci left: 8.475901e-04	ci right 9.908777e-04	k: 642	n:700000
SPRY3   700000 perm   349 sec   (2004 perm/sec)   p_kst 9.171429e-04   p_cons 3.936157e-01   p_joint 1.152857e-03

Joint ci ratio: 1.369805e-01	ci left: 1.073183e-03	ci right 1.232340e-03	k: 817	n:710000
Cons ci ratio: 5.774701e-03	ci left: 3.924394e-01	ci right 3.947136e-01	k: 279439	n:710000
KS ci ratio: 1.533308e-01	ci left: 8.491942e-04	ci right 9.915481e-04	k: 652	n:710000
SPRY3   710000 perm   357 sec   (1986 perm/sec)   p_kst 9.183099e-04   p_cons 3.935761e-01   p_joint 1.150704e-03

Joint ci ratio: 1.221740e-01	ci left: 1.340531e-03	ci right 1.516297e-03	k: 1027	n:720000
Cons ci ratio: 5.734405e-03	ci left: 3.924518e-01	ci right 3.947101e-01	k: 283378	n:720000
KS ci ratio: 1.520552e-01	ci left: 8.520940e-04	ci right 9.936376e-04	k: 663	n:720000
SPRY3   720000 perm   366 sec   (1969 perm/sec)   p_kst 9.208333e-04   p_cons 3.935806e-01   p_joint 1.426389e-03

Joint ci ratio: 1.308775e-01	ci left: 1.147055e-03	ci right 1.309000e-03	k: 895	n:730000
Cons ci ratio: 5.695431e-03	ci left: 3.924229e-01	ci right 3.946656e-01	k: 287287	n:730000
KS ci ratio: 1.514864e-01	ci left: 8.470105e-04	ci right 9.871356e-04	k: 668	n:730000
SPRY3   730000 perm   374 sec   (1953 perm/sec)   p_kst 9.150685e-04   p_cons 3.935438e-01   p_joint 1.226027e-03

Joint ci ratio: 1.291581e-01	ci left: 1.162932e-03	ci right 1.324796e-03	k: 919	n:740000
Cons ci ratio: 5.656649e-03	ci left: 3.924448e-01	ci right 3.946723e-01	k: 291233	n:740000
KS ci ratio: 1.501455e-01	ci left: 8.511689e-04	ci right 9.906234e-04	k: 680	n:740000
SPRY3   740000 perm   382 sec   (1936 perm/sec)   p_kst 9.189189e-04   p_cons 3.935581e-01   p_joint 1.241892e-03

Joint ci ratio: 1.282551e-01	ci left: 1.164202e-03	ci right 1.325024e-03	k: 932	n:750000
Cons ci ratio: 5.619417e-03	ci left: 3.924008e-01	ci right 3.946134e-01	k: 295130	n:750000
KS ci ratio: 1.487322e-01	ci left: 8.565053e-04	ci right 9.953959e-04	k: 693	n:750000
SPRY3   750000 perm   390 sec   (1921 perm/sec)   p_kst 9.240000e-04   p_cons 3.935067e-01   p_joint 1.242667e-03

Joint ci ratio: 1.072728e-01	ci left: 1.659839e-03	ci right 1.849254e-03	k: 1332	n:760000
Cons ci ratio: 5.581711e-03	ci left: 3.924606e-01	ci right 3.946586e-01	k: 299105	n:760000
KS ci ratio: 1.477771e-01	ci left: 8.566384e-04	ci right 9.945796e-04	k: 702	n:760000
SPRY3   760000 perm   399 sec   (1905 perm/sec)   p_kst 9.236842e-04   p_cons 3.935592e-01   p_joint 1.752632e-03

Joint ci ratio: 1.073143e-01	ci left: 1.637018e-03	ci right 1.823906e-03	k: 1331	n:770000
Cons ci ratio: 5.545613e-03	ci left: 3.924449e-01	ci right 3.946286e-01	k: 303023	n:770000
KS ci ratio: 1.468402e-01	ci left: 8.567707e-04	ci right 9.937818e-04	k: 711	n:770000
SPRY3   770000 perm   408 sec   (1889 perm/sec)   p_kst 9.233766e-04   p_cons 3.935364e-01   p_joint 1.728571e-03

Joint ci ratio: 1.074368e-01	ci left: 1.612286e-03	ci right 1.796574e-03	k: 1328	n:780000
Cons ci ratio: 5.510414e-03	ci left: 3.924118e-01	ci right 3.945813e-01	k: 306927	n:780000
KS ci ratio: 1.457187e-01	ci left: 8.593730e-04	ci right 9.956593e-04	k: 722	n:780000
SPRY3   780000 perm   416 sec   (1874 perm/sec)   p_kst 9.256410e-04   p_cons 3.934962e-01   p_joint 1.702564e-03

Joint ci ratio: 1.070754e-01	ci left: 1.602964e-03	ci right 1.785531e-03	k: 1337	n:790000
Cons ci ratio: 5.474541e-03	ci left: 3.924959e-01	ci right 3.946517e-01	k: 310923	n:790000
KS ci ratio: 1.454179e-01	ci left: 8.521537e-04	ci right 9.869920e-04	k: 725	n:790000
SPRY3   790000 perm   425 sec   (1858 perm/sec)   p_kst 9.177215e-04   p_cons 3.935734e-01   p_joint 1.692405e-03

Joint ci ratio: 9.539552e-02	ci left: 2.005750e-03	ci right 2.207882e-03	k: 1684	n:800000
Cons ci ratio: 5.440071e-03	ci left: 3.925155e-01	ci right 3.946578e-01	k: 314869	n:800000
KS ci ratio: 1.442305e-01	ci left: 8.559584e-04	ci right 9.901976e-04	k: 737	n:800000
SPRY3   800000 perm   434 sec   (1844 perm/sec)   p_kst 9.212500e-04   p_cons 3.935863e-01   p_joint 2.105000e-03

Joint ci ratio: 9.472315e-02	ci left: 2.009913e-03	ci right 2.210958e-03	k: 1708	n:810000
Cons ci ratio: 5.407363e-03	ci left: 3.924359e-01	ci right 3.945649e-01	k: 318735	n:810000
KS ci ratio: 1.432631e-01	ci left: 8.572927e-04	ci right 9.907623e-04	k: 747	n:810000
SPRY3   810000 perm   443 sec   (1829 perm/sec)   p_kst 9.222222e-04   p_cons 3.935000e-01   p_joint 2.108642e-03

Joint ci ratio: 9.406480e-02	ci left: 2.013979e-03	ci right 2.213954e-03	k: 1732	n:820000
Cons ci ratio: 5.374757e-03	ci left: 3.924009e-01	ci right 3.945169e-01	k: 322636	n:820000
KS ci ratio: 1.427870e-01	ci left: 8.527172e-04	ci right 9.849956e-04	k: 752	n:820000
SPRY3   820000 perm   452 sec   (1815 perm/sec)   p_kst 9.170732e-04   p_cons 3.934585e-01   p_joint 2.112195e-03

Joint ci ratio: 1.230273e-01	ci left: 1.146513e-03	ci right 1.297966e-03	k: 1013	n:830000
Cons ci ratio: 5.342991e-03	ci left: 3.923440e-01	ci right 3.944471e-01	k: 326518	n:830000
KS ci ratio: 1.418482e-01	ci left: 8.540627e-04	ci right 9.856051e-04	k: 762	n:830000
SPRY3   830000 perm   461 sec   (1802 perm/sec)   p_kst 9.180723e-04   p_cons 3.933952e-01   p_joint 1.220482e-03

Joint ci ratio: 1.224252e-01	ci left: 1.144404e-03	ci right 1.294784e-03	k: 1023	n:840000
Cons ci ratio: 5.311727e-03	ci left: 3.922932e-01	ci right 3.943837e-01	k: 330404	n:840000
KS ci ratio: 1.411105e-01	ci left: 8.530819e-04	ci right 9.837324e-04	k: 770	n:840000
SPRY3   840000 perm   470 sec   (1788 perm/sec)   p_kst 9.166667e-04   p_cons 3.933381e-01   p_joint 1.217857e-03

Joint ci ratio: 1.041966e-01	ci left: 1.575717e-03	ci right 1.750060e-03	k: 1412	n:850000
Cons ci ratio: 5.280499e-03	ci left: 3.922895e-01	ci right 3.943677e-01	k: 334329	n:850000
KS ci ratio: 1.402940e-01	ci left: 8.532612e-04	ci right 9.831198e-04	k: 779	n:850000
SPRY3   850000 perm   479 sec   (1774 perm/sec)   p_kst 9.164706e-04   p_cons 3.933282e-01   p_joint 1.661176e-03

Joint ci ratio: 1.047560e-01	ci left: 1.540407e-03	ci right 1.711815e-03	k: 1397	n:860000
Cons ci ratio: 5.250224e-03	ci left: 3.922488e-01	ci right 3.943147e-01	k: 338222	n:860000
KS ci ratio: 1.394916e-01	ci left: 8.534384e-04	ci right 9.825194e-04	k: 788	n:860000
SPRY3   860000 perm   488 sec   (1761 perm/sec)   p_kst 9.162791e-04   p_cons 3.932814e-01   p_joint 1.624419e-03

Joint ci ratio: 9.069788e-02	ci left: 2.045332e-03	ci right 2.240765e-03	k: 1863	n:870000
Cons ci ratio: 5.219734e-03	ci left: 3.922756e-01	ci right 3.943297e-01	k: 342173	n:870000
KS ci ratio: 1.385291e-01	ci left: 8.558328e-04	ci right 9.843091e-04	k: 799	n:870000
SPRY3   870000 perm   498 sec   (1749 perm/sec)   p_kst 9.183908e-04   p_cons 3.933023e-01   p_joint 2.141379e-03

Joint ci ratio: 9.091921e-02	ci left: 2.012093e-03	ci right 2.204844e-03	k: 1854	n:880000
Cons ci ratio: 5.189622e-03	ci left: 3.923155e-01	ci right 3.943579e-01	k: 346136	n:880000
KS ci ratio: 1.378417e-01	ci left: 8.548840e-04	ci right 9.825288e-04	k: 807	n:880000
SPRY3   880000 perm   507 sec   (1735 perm/sec)   p_kst 9.170455e-04   p_cons 3.933364e-01   p_joint 2.106818e-03

Joint ci ratio: 9.136557e-02	ci left: 1.969719e-03	ci right 2.159387e-03	k: 1836	n:890000
Cons ci ratio: 5.160911e-03	ci left: 3.922726e-01	ci right 3.943034e-01	k: 350026	n:890000
KS ci ratio: 1.369128e-01	ci left: 8.572134e-04	ci right 9.842731e-04	k: 818	n:890000
SPRY3   890000 perm   517 sec   (1723 perm/sec)   p_kst 9.191011e-04   p_cons 3.932876e-01   p_joint 2.062921e-03

Joint ci ratio: 9.089680e-02	ci left: 1.968464e-03	ci right 2.156986e-03	k: 1855	n:900000
Cons ci ratio: 5.132815e-03	ci left: 3.922173e-01	ci right 3.942367e-01	k: 353904	n:900000
KS ci ratio: 1.364142e-01	ci left: 8.541275e-04	ci right 9.802313e-04	k: 824	n:900000
SPRY3   900000 perm   526 sec   (1711 perm/sec)   p_kst 9.155556e-04   p_cons 3.932267e-01   p_joint 2.061111e-03

Joint ci ratio: 9.045934e-02	ci left: 1.966164e-03	ci right 2.153512e-03	k: 1873	n:910000
Cons ci ratio: 5.105267e-03	ci left: 3.921545e-01	ci right 3.941627e-01	k: 357774	n:910000
KS ci ratio: 1.356762e-01	ci left: 8.542949e-04	ci right 9.796861e-04	k: 833	n:910000
SPRY3   910000 perm   536 sec   (1699 perm/sec)   p_kst 9.153846e-04   p_cons 3.931582e-01   p_joint 2.058242e-03

Joint ci ratio: 9.036377e-02	ci left: 1.949041e-03	ci right 2.134551e-03	k: 1877	n:920000
Cons ci ratio: 5.077487e-03	ci left: 3.921560e-01	ci right 3.941533e-01	k: 361702	n:920000
KS ci ratio: 1.350302e-01	ci left: 8.534103e-04	ci right 9.780273e-04	k: 841	n:920000
SPRY3   920000 perm   546 sec   (1686 perm/sec)   p_kst 9.141304e-04   p_cons 3.931543e-01   p_joint 2.040217e-03

Joint ci ratio: 9.017251e-02	ci left: 1.936491e-03	ci right 2.120396e-03	k: 1885	n:930000
Cons ci ratio: 5.049359e-03	ci left: 3.922328e-01	ci right 3.942194e-01	k: 365700	n:930000
KS ci ratio: 1.344726e-01	ci left: 8.515069e-04	ci right 9.752914e-04	k: 848	n:930000
SPRY3   930000 perm   556 sec   (1673 perm/sec)   p_kst 9.118280e-04   p_cons 3.932258e-01   p_joint 2.026882e-03

Joint ci ratio: 9.024544e-02	ci left: 1.912770e-03	ci right 2.094576e-03	k: 1882	n:940000
Cons ci ratio: 5.023193e-03	ci left: 3.921656e-01	ci right 3.941415e-01	k: 369564	n:940000
KS ci ratio: 1.336875e-01	ci left: 8.527298e-04	ci right 9.759109e-04	k: 858	n:940000
SPRY3   940000 perm   566 sec   (1661 perm/sec)   p_kst 9.127660e-04   p_cons 3.931532e-01   p_joint 2.002128e-03

Joint ci ratio: 9.056016e-02	ci left: 1.879259e-03	ci right 2.058536e-03	k: 1869	n:950000
Cons ci ratio: 4.996515e-03	ci left: 3.921871e-01	ci right 3.941525e-01	k: 373511	n:950000
KS ci ratio: 1.329160e-01	ci left: 8.539290e-04	ci right 9.765152e-04	k: 868	n:950000
SPRY3   950000 perm   576 sec   (1649 perm/sec)   p_kst 9.136842e-04   p_cons 3.931695e-01   p_joint 1.967368e-03

Joint ci ratio: 9.017538e-02	ci left: 1.875973e-03	ci right 2.054137e-03	k: 1885	n:960000
Cons ci ratio: 4.970572e-03	ci left: 3.921779e-01	ci right 3.941331e-01	k: 377429	n:960000
KS ci ratio: 1.326115e-01	ci left: 8.490621e-04	ci right 9.706484e-04	k: 872	n:960000
SPRY3   960000 perm   586 sec   (1637 perm/sec)   p_kst 9.083333e-04   p_cons 3.931552e-01   p_joint 1.963542e-03

Joint ci ratio: 8.680557e-02	ci left: 2.006849e-03	ci right 2.189959e-03	k: 2034	n:970000
Cons ci ratio: 4.944185e-03	ci left: 3.922504e-01	ci right 3.941956e-01	k: 381426	n:970000
KS ci ratio: 1.318584e-01	ci left: 8.502771e-04	ci right 9.712918e-04	k: 882	n:970000
SPRY3   970000 perm   597 sec   (1625 perm/sec)   p_kst 9.092784e-04   p_cons 3.932227e-01   p_joint 2.096907e-03

Joint ci ratio: 8.780663e-02	ci left: 1.940454e-03	ci right 2.119652e-03	k: 1988	n:980000
Cons ci ratio: 4.919413e-03	ci left: 3.922052e-01	ci right 3.941403e-01	k: 385309	n:980000
KS ci ratio: 1.311180e-01	ci left: 8.514693e-04	ci right 9.719201e-04	k: 892	n:980000
SPRY3   980000 perm   607 sec   (1614 perm/sec)   p_kst 9.102041e-04   p_cons 3.931724e-01   p_joint 2.028571e-03

Joint ci ratio: 8.732493e-02	ci left: 1.942589e-03	ci right 2.120950e-03	k: 2010	n:990000
Cons ci ratio: 4.894253e-03	ci left: 3.922346e-01	ci right 3.941600e-01	k: 389265	n:990000
KS ci ratio: 1.305346e-01	ci left: 8.506849e-04	ci right 9.704479e-04	k: 900	n:990000
SPRY3   990000 perm   618 sec   (1603 perm/sec)   p_kst 9.090909e-04   p_cons 3.931970e-01   p_joint 2.030303e-03

Joint ci ratio: 8.680831e-02	ci left: 1.946641e-03	ci right 2.124263e-03	k: 2034	n:1000000
Cons ci ratio: 4.869842e-03	ci left: 3.922275e-01	ci right 3.941432e-01	k: 393185	n:1000000
KS ci ratio: 1.298875e-01	ci left: 8.508849e-04	ci right 9.700364e-04	k: 909	n:1000000
SPRY3   1000000 perm   628 sec   (1592 perm/sec)   p_kst 9.090000e-04   p_cons 3.931850e-01   p_joint 2.034000e-03

Joint ci ratio: 8.663871e-02	ci left: 1.935116e-03	ci right 2.111324e-03	k: 2042	n:1010000
Cons ci ratio: 4.845130e-03	ci left: 3.922858e-01	ci right 3.941920e-01	k: 397171	n:1010000
KS ci ratio: 1.295324e-01	ci left: 8.472501e-04	ci right 9.655433e-04	k: 914	n:1010000
SPRY3   1010000 perm   639 sec   (1581 perm/sec)   p_kst 9.049505e-04   p_cons 3.932386e-01   p_joint 2.021782e-03

Joint ci ratio: 8.605071e-02	ci left: 1.943003e-03	ci right 2.118668e-03	k: 2070	n:1020000
Cons ci ratio: 4.821572e-03	ci left: 3.922656e-01	ci right 3.941625e-01	k: 401078	n:1020000
KS ci ratio: 1.285524e-01	ci left: 8.522262e-04	ci right 9.702453e-04	k: 928	n:1020000
SPRY3   1020000 perm   649 sec   (1571 perm/sec)   p_kst 9.098039e-04   p_cons 3.932137e-01   p_joint 2.029412e-03

Joint ci ratio: 8.563821e-02	ci left: 1.943139e-03	ci right 2.117933e-03	k: 2090	n:1030000
Cons ci ratio: 4.798990e-03	ci left: 3.921827e-01	ci right 3.940703e-01	k: 404920	n:1030000
KS ci ratio: 1.277979e-01	ci left: 8.542894e-04	ci right 9.718473e-04	k: 939	n:1030000
SPRY3   1030000 perm   660 sec   (1560 perm/sec)   p_kst 9.116505e-04   p_cons 3.931262e-01   p_joint 2.029126e-03

Joint ci ratio: 8.645066e-02	ci left: 1.887760e-03	ci right 2.059264e-03	k: 2051	n:1040000
Cons ci ratio: 4.775624e-03	ci left: 3.922111e-01	ci right 3.940895e-01	k: 408876	n:1040000
KS ci ratio: 1.271905e-01	ci left: 8.544530e-04	ci right 9.714323e-04	k: 948	n:1040000
SPRY3   1040000 perm   671 sec   (1550 perm/sec)   p_kst 9.115385e-04   p_cons 3.931500e-01   p_joint 1.972115e-03

Joint ci ratio: 9.669231e-02	ci left: 1.487273e-03	ci right 1.639307e-03	k: 1640	n:1050000
Cons ci ratio: 4.916406e-03	ci left: 3.761985e-01	ci right 3.780536e-01	k: 395982	n:1050000
KS ci ratio: 1.261312e-01	ci left: 8.610708e-04	ci right 9.779010e-04	k: 964	n:1050000
SPRY3   1050000 perm   682 sec   (1540 perm/sec)   p_kst 9.180952e-04   p_cons 3.771257e-01   p_joint 1.561905e-03

Joint ci ratio: 9.675209e-02	ci left: 1.471400e-03	ci right 1.621911e-03	k: 1638	n:1060000
Cons ci ratio: 4.893114e-03	ci left: 3.762074e-01	ci right 3.780537e-01	k: 399758	n:1060000
KS ci ratio: 1.256763e-01	ci left: 8.593432e-04	ci right 9.754872e-04	k: 971	n:1060000
SPRY3   1060000 perm   693 sec   (1530 perm/sec)   p_kst 9.160377e-04   p_cons 3.771302e-01   p_joint 1.545283e-03

Joint ci ratio: 9.625413e-02	ci left: 1.473153e-03	ci right 1.623024e-03	k: 1655	n:1070000
Cons ci ratio: 4.870091e-03	ci left: 3.762217e-01	ci right 3.780593e-01	k: 403540	n:1070000
KS ci ratio: 1.249075e-01	ci left: 8.621755e-04	ci right 9.779367e-04	k: 983	n:1070000
SPRY3   1070000 perm   704 sec   (1520 perm/sec)   p_kst 9.186916e-04   p_cons 3.771402e-01   p_joint 1.546729e-03

Joint ci ratio: 9.570650e-02	ci left: 1.476683e-03	ci right 1.626010e-03	k: 1674	n:1080000
Cons ci ratio: 4.847496e-03	ci left: 3.762256e-01	ci right 3.780547e-01	k: 407311	n:1080000
KS ci ratio: 1.244029e-01	ci left: 8.613688e-04	ci right 9.765200e-04	k: 991	n:1080000
SPRY3   1080000 perm   715 sec   (1510 perm/sec)   p_kst 9.175926e-04   p_cons 3.771398e-01   p_joint 1.550000e-03

Joint ci ratio: 9.608133e-02	ci left: 1.451494e-03	ci right 1.598881e-03	k: 1661	n:1090000
Cons ci ratio: 4.825599e-03	ci left: 3.761918e-01	ci right 3.780125e-01	k: 411041	n:1090000
KS ci ratio: 1.237805e-01	ci left: 8.623559e-04	ci right 9.770200e-04	k: 1001	n:1090000
SPRY3   1090000 perm   727 sec   (1500 perm/sec)   p_kst 9.183486e-04   p_cons 3.771018e-01   p_joint 1.523853e-03

Joint ci ratio: 9.669575e-02	ci left: 1.419667e-03	ci right 1.564796e-03	k: 1640	n:1100000
Cons ci ratio: 4.802629e-03	ci left: 3.762923e-01	ci right 3.781047e-01	k: 414918	n:1100000
KS ci ratio: 1.225028e-01	ci left: 8.730195e-04	ci right 9.878164e-04	k: 1022	n:1100000
SPRY3   1100000 perm   738 sec   (1490 perm/sec)   p_kst 9.290909e-04   p_cons 3.771982e-01   p_joint 1.490909e-03

Joint ci ratio: 9.726194e-02	ci left: 1.390174e-03	ci right 1.533168e-03	k: 1621	n:1110000
Cons ci ratio: 4.781249e-03	ci left: 3.762667e-01	ci right 3.780709e-01	k: 418657	n:1110000
KS ci ratio: 1.220859e-01	ci left: 8.712678e-04	ci right 9.854163e-04	k: 1029	n:1110000
SPRY3   1110000 perm   750 sec   (1480 perm/sec)   p_kst 9.270270e-04   p_cons 3.771685e-01   p_joint 1.460360e-03

Joint ci ratio: 9.705307e-02	ci left: 1.383860e-03	ci right 1.525881e-03	k: 1628	n:1120000
Cons ci ratio: 4.759809e-03	ci left: 3.762755e-01	ci right 3.780716e-01	k: 422434	n:1120000
KS ci ratio: 1.216733e-01	ci left: 8.695480e-04	ci right 9.830585e-04	k: 1036	n:1120000
SPRY3   1120000 perm   761 sec   (1471 perm/sec)   p_kst 9.250000e-04   p_cons 3.771732e-01   p_joint 1.453571e-03

Joint ci ratio: 9.723318e-02	ci left: 1.366432e-03	ci right 1.506940e-03	k: 1622	n:1130000
Cons ci ratio: 4.738216e-03	ci left: 3.763274e-01	ci right 3.781157e-01	k: 426260	n:1130000
KS ci ratio: 1.210330e-01	ci left: 8.712919e-04	ci right 9.843886e-04	k: 1047	n:1130000
SPRY3   1130000 perm   773 sec   (1461 perm/sec)   p_kst 9.265487e-04   p_cons 3.772212e-01   p_joint 1.435398e-03

Joint ci ratio: 9.705431e-02	ci left: 1.359581e-03	ci right 1.499112e-03	k: 1628	n:1140000
Cons ci ratio: 4.717259e-03	ci left: 3.763443e-01	ci right 3.781247e-01	k: 430047	n:1140000
KS ci ratio: 1.207455e-01	ci left: 8.679023e-04	ci right 9.802723e-04	k: 1052	n:1140000
SPRY3   1140000 perm   785 sec   (1453 perm/sec)   p_kst 9.228070e-04   p_cons 3.772342e-01   p_joint 1.428070e-03

Joint ci ratio: 9.771794e-02	ci left: 1.329093e-03	ci right 1.466481e-03	k: 1606	n:1150000
Cons ci ratio: 4.696429e-03	ci left: 3.763757e-01	ci right 3.781484e-01	k: 433851	n:1150000
KS ci ratio: 1.202328e-01	ci left: 8.679455e-04	ci right 9.798100e-04	k: 1061	n:1150000
SPRY3   1150000 perm   797 sec   (1443 perm/sec)   p_kst 9.226087e-04   p_cons 3.772617e-01   p_joint 1.396522e-03

Joint ci ratio: 9.741548e-02	ci left: 1.326045e-03	ci right 1.462670e-03	k: 1616	n:1160000
Cons ci ratio: 4.676817e-03	ci left: 3.763118e-01	ci right 3.780767e-01	k: 437545	n:1160000
KS ci ratio: 1.197266e-01	ci left: 8.679890e-04	ci right 9.793548e-04	k: 1070	n:1160000
SPRY3   1160000 perm   809 sec   (1435 perm/sec)   p_kst 9.224138e-04   p_cons 3.771940e-01   p_joint 1.393103e-03

Joint ci ratio: 9.702627e-02	ci left: 1.325553e-03	ci right 1.461550e-03	k: 1629	n:1170000
Cons ci ratio: 4.657092e-03	ci left: 3.762849e-01	ci right 3.780422e-01	k: 441281	n:1170000
KS ci ratio: 1.191715e-01	ci left: 8.688619e-04	ci right 9.797864e-04	k: 1080	n:1170000
SPRY3   1170000 perm   820 sec   (1426 perm/sec)   p_kst 9.230769e-04   p_cons 3.771632e-01   p_joint 1.392308e-03

Joint ci ratio: 9.670065e-02	ci left: 1.323415e-03	ci right 1.458712e-03	k: 1640	n:1180000
Cons ci ratio: 4.637698e-03	ci left: 3.762500e-01	ci right 3.779998e-01	k: 445007	n:1180000
KS ci ratio: 1.188970e-01	ci left: 8.656097e-04	ci right 9.758467e-04	k: 1085	n:1180000
SPRY3   1180000 perm   833 sec   (1417 perm/sec)   p_kst 9.194915e-04   p_cons 3.771246e-01   p_joint 1.389831e-03

Joint ci ratio: 9.966428e-02	ci left: 1.233600e-03	ci right 1.363805e-03	k: 1544	n:1190000
Cons ci ratio: 4.617925e-03	ci left: 3.762786e-01	ci right 3.780211e-01	k: 448808	n:1190000
KS ci ratio: 1.182993e-01	ci left: 8.673052e-04	ci right 9.771640e-04	k: 1096	n:1190000
SPRY3   1190000 perm   845 sec   (1409 perm/sec)   p_kst 9.210084e-04   p_cons 3.771496e-01   p_joint 1.297479e-03

Joint ci ratio: 9.934342e-02	ci left: 1.231445e-03	ci right 1.360981e-03	k: 1554	n:1200000
Cons ci ratio: 4.598729e-03	ci left: 3.762735e-01	ci right 3.780087e-01	k: 452569	n:1200000
KS ci ratio: 1.179773e-01	ci left: 8.649299e-04	ci right 9.741687e-04	k: 1102	n:1200000
SPRY3   1200000 perm   857 sec   (1400 perm/sec)   p_kst 9.183333e-04   p_cons 3.771408e-01   p_joint 1.295000e-03

Joint ci ratio: 8.716760e-02	ci left: 1.595846e-03	ci right 1.742093e-03	k: 2018	n:1210000
Cons ci ratio: 4.580561e-03	ci left: 3.761876e-01	ci right 3.779155e-01	k: 456232	n:1210000
KS ci ratio: 1.173933e-01	ci left: 8.666050e-04	ci right 9.754761e-04	k: 1113	n:1210000
SPRY3   1210000 perm   869 sec   (1392 perm/sec)   p_kst 9.198347e-04   p_cons 3.770512e-01   p_joint 1.667769e-03

Joint ci ratio: 8.738523e-02	ci left: 1.574747e-03	ci right 1.719439e-03	k: 2008	n:1220000
Cons ci ratio: 4.561944e-03	ci left: 3.761710e-01	ci right 3.778918e-01	k: 459978	n:1220000
KS ci ratio: 1.166106e-01	ci left: 8.714371e-04	ci right 9.801350e-04	k: 1128	n:1220000
SPRY3   1220000 perm   882 sec   (1384 perm/sec)   p_kst 9.245902e-04   p_cons 3.770311e-01   p_joint 1.645902e-03

Joint ci ratio: 8.619082e-02	ci left: 1.606486e-03	ci right 1.751975e-03	k: 2064	n:1230000
Cons ci ratio: 4.543459e-03	ci left: 3.761645e-01	ci right 3.778783e-01	k: 463736	n:1230000
KS ci ratio: 1.161485e-01	ci left: 8.714563e-04	ci right 9.796964e-04	k: 1137	n:1230000
SPRY3   1230000 perm   894 sec   (1375 perm/sec)   p_kst 9.243902e-04   p_cons 3.770211e-01   p_joint 1.678049e-03

Joint ci ratio: 9.087354e-02	ci left: 1.430282e-03	ci right 1.567225e-03	k: 1857	n:1240000
Cons ci ratio: 4.525227e-03	ci left: 3.761549e-01	ci right 3.778618e-01	k: 467490	n:1240000
KS ci ratio: 1.158437e-01	ci left: 8.691267e-04	ci right 9.767747e-04	k: 1143	n:1240000
SPRY3   1240000 perm   907 sec   (1367 perm/sec)   p_kst 9.217742e-04   p_cons 3.770081e-01   p_joint 1.497581e-03

Joint ci ratio: 9.048473e-02	ci left: 1.431349e-03	ci right 1.567777e-03	k: 1873	n:1250000
Cons ci ratio: 4.506615e-03	ci left: 3.762079e-01	ci right 3.779079e-01	k: 471322	n:1250000
KS ci ratio: 1.152907e-01	ci left: 8.707194e-04	ci right 9.780148e-04	k: 1154	n:1250000
SPRY3   1250000 perm   920 sec   (1359 perm/sec)   p_kst 9.232000e-04   p_cons 3.770576e-01   p_joint 1.498400e-03

Joint ci ratio: 9.109584e-02	ci left: 1.400598e-03	ci right 1.535044e-03	k: 1848	n:1260000
Cons ci ratio: 4.489140e-03	ci left: 3.761648e-01	ci right 3.778580e-01	k: 475034	n:1260000
KS ci ratio: 1.149430e-01	ci left: 8.692044e-04	ci right 9.759682e-04	k: 1161	n:1260000
SPRY3   1260000 perm   933 sec   (1351 perm/sec)   p_kst 9.214286e-04   p_cons 3.770111e-01   p_joint 1.466667e-03

Joint ci ratio: 9.072856e-02	ci left: 1.401112e-03	ci right 1.535036e-03	k: 1863	n:1270000
Cons ci ratio: 4.471822e-03	ci left: 3.761271e-01	ci right 3.778136e-01	k: 478752	n:1270000
KS ci ratio: 1.145494e-01	ci left: 8.684787e-04	ci right 9.747634e-04	k: 1169	n:1270000
SPRY3   1270000 perm   946 sec   (1342 perm/sec)   p_kst 9.204724e-04   p_cons 3.769701e-01   p_joint 1.466929e-03

Joint ci ratio: 9.036568e-02	ci left: 1.401619e-03	ci right 1.535028e-03	k: 1878	n:1280000
Cons ci ratio: 4.455177e-03	ci left: 3.760401e-01	ci right 3.777199e-01	k: 482406	n:1280000
KS ci ratio: 1.141114e-01	ci left: 8.685239e-04	ci right 9.743803e-04	k: 1178	n:1280000
SPRY3   1280000 perm   959 sec   (1335 perm/sec)   p_kst 9.203125e-04   p_cons 3.768797e-01   p_joint 1.467187e-03

Joint ci ratio: 9.012633e-02	ci left: 1.398331e-03	ci right 1.531056e-03	k: 1888	n:1290000
Cons ci ratio: 4.437684e-03	ci left: 3.760636e-01	ci right 3.777369e-01	k: 486201	n:1290000
KS ci ratio: 1.137742e-01	ci left: 8.670628e-04	ci right 9.724080e-04	k: 1185	n:1290000
SPRY3   1290000 perm   972 sec   (1327 perm/sec)   p_kst 9.186047e-04   p_cons 3.769000e-01   p_joint 1.463566e-03

Joint ci ratio: 8.967632e-02	ci left: 1.401861e-03	ci right 1.534222e-03	k: 1907	n:1300000
Cons ci ratio: 4.420510e-03	ci left: 3.760745e-01	ci right 3.777414e-01	k: 489980	n:1300000
KS ci ratio: 1.131556e-01	ci left: 8.701094e-04	ci right 9.752115e-04	k: 1198	n:1300000
SPRY3   1300000 perm   985 sec   (1319 perm/sec)   p_kst 9.215385e-04   p_cons 3.769077e-01   p_joint 1.466923e-03

Joint ci ratio: 8.930262e-02	ci left: 1.403100e-03	ci right 1.534997e-03	k: 1923	n:1310000
Cons ci ratio: 4.403234e-03	ci left: 3.761173e-01	ci right 3.777779e-01	k: 493801	n:1310000
KS ci ratio: 1.126866e-01	ci left: 8.708853e-04	ci right 9.756162e-04	k: 1208	n:1310000
SPRY3   1310000 perm   998 sec   (1312 perm/sec)   p_kst 9.221374e-04   p_cons 3.769473e-01   p_joint 1.467939e-03

Joint ci ratio: 8.895652e-02	ci left: 1.403581e-03	ci right 1.534985e-03	k: 1938	n:1320000
Cons ci ratio: 4.386860e-03	ci left: 3.760845e-01	ci right 3.777387e-01	k: 497523	n:1320000
KS ci ratio: 1.122695e-01	ci left: 8.709141e-04	ci right 9.752351e-04	k: 1217	n:1320000
SPRY3   1320000 perm   1012 sec   (1305 perm/sec)   p_kst 9.219697e-04   p_cons 3.769114e-01   p_joint 1.468182e-03

Joint ci ratio: 8.856903e-02	ci left: 1.405526e-03	ci right 1.536510e-03	k: 1955	n:1330000
Cons ci ratio: 4.370827e-03	ci left: 3.760350e-01	ci right 3.776829e-01	k: 501222	n:1330000
KS ci ratio: 1.116296e-01	ci left: 8.745975e-04	ci right 9.787233e-04	k: 1231	n:1330000
SPRY3   1330000 perm   1025 sec   (1297 perm/sec)   p_kst 9.255639e-04   p_cons 3.768586e-01   p_joint 1.469925e-03

Joint ci ratio: 8.834365e-02	ci left: 1.402335e-03	ci right 1.532671e-03	k: 1965	n:1340000
Cons ci ratio: 4.354561e-03	ci left: 3.760301e-01	ci right 3.776719e-01	k: 504980	n:1340000
KS ci ratio: 1.114490e-01	ci left: 8.709724e-04	ci right 9.744879e-04	k: 1235	n:1340000
SPRY3   1340000 perm   1038 sec   (1291 perm/sec)   p_kst 9.216418e-04   p_cons 3.768507e-01   p_joint 1.466418e-03

Joint ci ratio: 9.044145e-02	ci left: 1.326768e-03	ci right 1.453164e-03	k: 1875	n:1350000
Cons ci ratio: 4.338222e-03	ci left: 3.760528e-01	ci right 3.776885e-01	k: 508775	n:1350000
KS ci ratio: 1.109563e-01	ci left: 8.724423e-04	ci right 9.756441e-04	k: 1246	n:1350000
SPRY3   1350000 perm   1052 sec   (1283 perm/sec)   p_kst 9.229630e-04   p_cons 3.768704e-01   p_joint 1.388889e-03

Joint ci ratio: 9.010586e-02	ci left: 1.327074e-03	ci right 1.453006e-03	k: 1889	n:1360000
Cons ci ratio: 4.322106e-03	ci left: 3.760707e-01	ci right 3.777004e-01	k: 512564	n:1360000
KS ci ratio: 1.106022e-01	ci left: 8.717466e-04	ci right 9.745155e-04	k: 1254	n:1360000
SPRY3   1360000 perm   1066 sec   (1276 perm/sec)   p_kst 9.220588e-04   p_cons 3.768853e-01   p_joint 1.388971e-03

Joint ci ratio: 9.149849e-02	ci left: 1.276725e-03	ci right 1.399851e-03	k: 1832	n:1370000
Cons ci ratio: 4.306643e-03	ci left: 3.760366e-01	ci right 3.776603e-01	k: 516282	n:1370000
KS ci ratio: 1.101641e-01	ci left: 8.724813e-04	ci right 9.749030e-04	k: 1264	n:1370000
SPRY3   1370000 perm   1079 sec   (1269 perm/sec)   p_kst 9.226277e-04   p_cons 3.768482e-01   p_joint 1.337226e-03

Joint ci ratio: 9.122526e-02	ci left: 1.275262e-03	ci right 1.397860e-03	k: 1843	n:1380000
Cons ci ratio: 4.290988e-03	ci left: 3.760421e-01	ci right 3.776599e-01	k: 520054	n:1380000
KS ci ratio: 1.097743e-01	ci left: 8.725013e-04	ci right 9.745395e-04	k: 1273	n:1380000
SPRY3   1380000 perm   1093 sec   (1263 perm/sec)   p_kst 9.224638e-04   p_cons 3.768507e-01   p_joint 1.335507e-03

Joint ci ratio: 8.433806e-02	ci left: 1.486339e-03	ci right 1.617911e-03	k: 2156	n:1390000
Cons ci ratio: 4.274899e-03	ci left: 3.761137e-01	ci right 3.777257e-01	k: 523918	n:1390000
KS ci ratio: 1.093886e-01	ci left: 8.725217e-04	ci right 9.741806e-04	k: 1282	n:1390000
SPRY3   1390000 perm   1107 sec   (1256 perm/sec)   p_kst 9.223022e-04   p_cons 3.769194e-01   p_joint 1.551079e-03

Joint ci ratio: 8.404635e-02	ci left: 1.486211e-03	ci right 1.617294e-03	k: 2171	n:1400000
Cons ci ratio: 4.259683e-03	ci left: 3.761079e-01	ci right 3.777141e-01	k: 527675	n:1400000
KS ci ratio: 1.090915e-01	ci left: 8.711527e-04	ci right 9.723588e-04	k: 1289	n:1400000
SPRY3   1400000 perm   1121 sec   (1249 perm/sec)   p_kst 9.207143e-04   p_cons 3.769107e-01   p_joint 1.550714e-03

Joint ci ratio: 8.375764e-02	ci left: 1.486085e-03	ci right 1.616685e-03	k: 2186	n:1410000
Cons ci ratio: 4.244744e-03	ci left: 3.760894e-01	ci right 3.776899e-01	k: 531414	n:1410000
KS ci ratio: 1.087548e-01	ci left: 8.704935e-04	ci right 9.712909e-04	k: 1297	n:1410000
SPRY3   1410000 perm   1135 sec   (1242 perm/sec)   p_kst 9.198582e-04   p_cons 3.768894e-01   p_joint 1.550355e-03

Joint ci ratio: 8.347189e-02	ci left: 1.485962e-03	ci right 1.616084e-03	k: 2201	n:1420000
Cons ci ratio: 4.229663e-03	ci left: 3.761042e-01	ci right 3.776991e-01	k: 535200	n:1420000
KS ci ratio: 1.083798e-01	ci left: 8.705292e-04	ci right 9.709609e-04	k: 1306	n:1420000
SPRY3   1420000 perm   1149 sec   (1235 perm/sec)   p_kst 9.197183e-04   p_cons 3.769014e-01   p_joint 1.550000e-03

Joint ci ratio: 8.368194e-02	ci left: 1.468039e-03	ci right 1.596931e-03	k: 2190	n:1430000
Cons ci ratio: 4.214472e-03	ci left: 3.761490e-01	ci right 3.777382e-01	k: 539029	n:1430000
KS ci ratio: 1.080908e-01	ci left: 8.692041e-04	ci right 9.691986e-04	k: 1313	n:1430000
SPRY3   1430000 perm   1164 sec   (1229 perm/sec)   p_kst 9.181818e-04   p_cons 3.769434e-01   p_joint 1.531469e-03

Joint ci ratio: 8.343485e-02	ci left: 1.466683e-03	ci right 1.595057e-03	k: 2203	n:1440000
Cons ci ratio: 4.199629e-03	ci left: 3.761722e-01	ci right 3.777560e-01	k: 542828	n:1440000
KS ci ratio: 1.078859e-01	ci left: 8.665464e-04	ci right 9.660341e-04	k: 1318	n:1440000
SPRY3   1440000 perm   1178 sec   (1222 perm/sec)   p_kst 9.152778e-04   p_cons 3.769639e-01   p_joint 1.529861e-03

Joint ci ratio: 8.324637e-02	ci left: 1.463321e-03	ci right 1.591097e-03	k: 2213	n:1450000
Cons ci ratio: 4.184912e-03	ci left: 3.761987e-01	ci right 3.777770e-01	k: 546632	n:1450000
KS ci ratio: 1.076414e-01	ci left: 8.645965e-04	ci right 9.636213e-04	k: 1324	n:1450000
SPRY3   1450000 perm   1193 sec   (1216 perm/sec)   p_kst 9.131034e-04   p_cons 3.769876e-01   p_joint 1.526207e-03

Joint ci ratio: 8.298445e-02	ci left: 1.462688e-03	ci right 1.589988e-03	k: 2227	n:1460000
Cons ci ratio: 4.170609e-03	ci left: 3.761953e-01	ci right 3.777682e-01	k: 550393	n:1460000
KS ci ratio: 1.072375e-01	ci left: 8.653399e-04	ci right 9.640544e-04	k: 1334	n:1460000
SPRY3   1460000 perm   1207 sec   (1209 perm/sec)   p_kst 9.136986e-04   p_cons 3.769815e-01   p_joint 1.525342e-03

Joint ci ratio: 8.278047e-02	ci left: 1.460065e-03	ci right 1.586810e-03	k: 2238	n:1470000
Cons ci ratio: 4.156380e-03	ci left: 3.762001e-01	ci right 3.777677e-01	k: 554166	n:1470000
KS ci ratio: 1.067983e-01	ci left: 8.667360e-04	ci right 9.651794e-04	k: 1345	n:1470000
SPRY3   1470000 perm   1222 sec   (1203 perm/sec)   p_kst 9.149660e-04   p_cons 3.769837e-01   p_joint 1.522449e-03

Joint ci ratio: 7.588005e-02	ci left: 1.731685e-03	ci right 1.868925e-03	k: 2663	n:1480000
Cons ci ratio: 4.142391e-03	ci left: 3.761941e-01	ci right 3.777564e-01	k: 557923	n:1480000
KS ci ratio: 1.064431e-01	ci left: 8.667986e-04	ci right 9.649011e-04	k: 1354	n:1480000
SPRY3   1480000 perm   1237 sec   (1197 perm/sec)   p_kst 9.148649e-04   p_cons 3.769750e-01   p_joint 1.799324e-03

Joint ci ratio: 7.554039e-02	ci left: 1.735866e-03	ci right 1.872794e-03	k: 2687	n:1490000
Cons ci ratio: 4.128170e-03	ci left: 3.762305e-01	ci right 3.777875e-01	k: 561743	n:1490000
KS ci ratio: 1.059747e-01	ci left: 8.688210e-04	ci right 9.666927e-04	k: 1366	n:1490000
SPRY3   1490000 perm   1252 sec   (1191 perm/sec)   p_kst 9.167785e-04   p_cons 3.770087e-01   p_joint 1.803356e-03

Joint ci ratio: 7.533057e-02	ci left: 1.734104e-03	ci right 1.870497e-03	k: 2702	n:1500000
Cons ci ratio: 4.114230e-03	ci left: 3.762510e-01	ci right 3.778028e-01	k: 565540	n:1500000
KS ci ratio: 1.057430e-01	ci left: 8.669229e-04	ci right 9.643540e-04	k: 1372	n:1500000
SPRY3   1500000 perm   1266 sec   (1184 perm/sec)   p_kst 9.146667e-04   p_cons 3.770267e-01   p_joint 1.801333e-03

Joint ci ratio: 7.510865e-02	ci left: 1.733017e-03	ci right 1.868905e-03	k: 2718	n:1510000
Cons ci ratio: 4.100614e-03	ci left: 3.762501e-01	ci right 3.777967e-01	k: 569305	n:1510000
KS ci ratio: 1.052458e-01	ci left: 8.695638e-04	ci right 9.668038e-04	k: 1385	n:1510000
SPRY3   1510000 perm   1281 sec   (1179 perm/sec)   p_kst 9.172185e-04   p_cons 3.770232e-01   p_joint 1.800000e-03

Joint ci ratio: 7.476555e-02	ci left: 1.737755e-03	ci right 1.873365e-03	k: 2743	n:1520000
Cons ci ratio: 4.086979e-03	ci left: 3.762669e-01	ci right 3.778085e-01	k: 573097	n:1520000
KS ci ratio: 1.048306e-01	ci left: 8.708898e-04	ci right 9.678701e-04	k: 1396	n:1520000
SPRY3   1520000 perm   1296 sec   (1172 perm/sec)   p_kst 9.184211e-04   p_cons 3.770375e-01   p_joint 1.804605e-03

Joint ci ratio: 7.452153e-02	ci left: 1.737942e-03	ci right 1.873105e-03	k: 2761	n:1530000
Cons ci ratio: 4.072917e-03	ci left: 3.763483e-01	ci right 3.778849e-01	k: 576988	n:1530000
KS ci ratio: 1.046063e-01	ci left: 8.690165e-04	ci right 9.655685e-04	k: 1402	n:1530000
SPRY3   1530000 perm   1312 sec   (1166 perm/sec)   p_kst 9.163399e-04   p_cons 3.771163e-01   p_joint 1.804575e-03

Joint ci ratio: 7.825797e-02	ci left: 1.562954e-03	ci right 1.690880e-03	k: 2504	n:1540000
Cons ci ratio: 4.059796e-03	ci left: 3.763364e-01	ci right 3.778680e-01	k: 580737	n:1540000
KS ci ratio: 1.042355e-01	ci left: 8.696975e-04	ci right 9.659616e-04	k: 1412	n:1540000
SPRY3   1540000 perm   1327 sec   (1161 perm/sec)   p_kst 9.168831e-04   p_cons 3.771019e-01   p_joint 1.625974e-03

Joint ci ratio: 7.396116e-02	ci left: 1.742111e-03	ci right 1.876536e-03	k: 2803	n:1550000
Cons ci ratio: 4.046557e-03	ci left: 3.763530e-01	ci right 3.778797e-01	k: 584530	n:1550000
KS ci ratio: 1.038320e-01	ci left: 8.709987e-04	ci right 9.670109e-04	k: 1423	n:1550000
SPRY3   1550000 perm   1342 sec   (1155 perm/sec)   p_kst 9.180645e-04   p_cons 3.771161e-01   p_joint 1.808387e-03

Joint ci ratio: 7.367262e-02	ci left: 1.744786e-03	ci right 1.878869e-03	k: 2825	n:1560000
Cons ci ratio: 4.033534e-03	ci left: 3.763592e-01	ci right 3.778810e-01	k: 588307	n:1560000
KS ci ratio: 1.036504e-01	ci left: 8.685373e-04	ci right 9.641004e-04	k: 1428	n:1560000
SPRY3   1560000 perm   1357 sec   (1150 perm/sec)   p_kst 9.153846e-04   p_cons 3.771199e-01   p_joint 1.810897e-03

Joint ci ratio: 7.346500e-02	ci left: 1.743676e-03	ci right 1.877281e-03	k: 2841	n:1570000
Cons ci ratio: 4.020527e-03	ci left: 3.763781e-01	ci right 3.778950e-01	k: 592104	n:1570000
KS ci ratio: 1.032537e-01	ci left: 8.698303e-04	ci right 9.651472e-04	k: 1439	n:1570000
SPRY3   1570000 perm   1372 sec   (1144 perm/sec)   p_kst 9.165605e-04   p_cons 3.771363e-01   p_joint 1.809554e-03

Joint ci ratio: 7.320781e-02	ci left: 1.745066e-03	ci right 1.878289e-03	k: 2861	n:1580000
Cons ci ratio: 4.007921e-03	ci left: 3.763644e-01	ci right 3.778765e-01	k: 595850	n:1580000
KS ci ratio: 1.028260e-01	ci left: 8.717243e-04	ci right 9.668292e-04	k: 1451	n:1580000
SPRY3   1580000 perm   1388 sec   (1139 perm/sec)   p_kst 9.183544e-04   p_cons 3.771203e-01   p_joint 1.810759e-03

Joint ci ratio: 7.346583e-02	ci left: 1.721742e-03	ci right 1.853668e-03	k: 2841	n:1590000
Cons ci ratio: 3.995042e-03	ci left: 3.763969e-01	ci right 3.779042e-01	k: 599669	n:1590000
KS ci ratio: 1.024737e-01	ci left: 8.723696e-04	ci right 9.671993e-04	k: 1461	n:1590000
SPRY3   1590000 perm   1403 sec   (1133 perm/sec)   p_kst 9.188679e-04   p_cons 3.771503e-01   p_joint 1.786792e-03

Joint ci ratio: 7.519562e-02	ci left: 1.631852e-03	ci right 1.759962e-03	k: 2712	n:1600000
Cons ci ratio: 3.982641e-03	ci left: 3.763870e-01	ci right 3.778896e-01	k: 603421	n:1600000
KS ci ratio: 1.022293e-01	ci left: 8.711803e-04	ci right 9.656412e-04	k: 1468	n:1600000
SPRY3   1600000 perm   1419 sec   (1128 perm/sec)   p_kst 9.175000e-04   p_cons 3.771381e-01   p_joint 1.695000e-03

Joint ci ratio: 7.497488e-02	ci left: 1.631468e-03	ci right 1.759155e-03	k: 2728	n:1610000
Cons ci ratio: 3.970156e-03	ci left: 3.764009e-01	ci right 3.778989e-01	k: 607211	n:1610000
KS ci ratio: 1.019867e-01	ci left: 8.700060e-04	ci right 9.641023e-04	k: 1475	n:1610000
SPRY3   1610000 perm   1434 sec   (1123 perm/sec)   p_kst 9.161491e-04   p_cons 3.771497e-01   p_joint 1.694410e-03

Joint ci ratio: 7.468797e-02	ci left: 1.634117e-03	ci right 1.761502e-03	k: 2749	n:1620000
Cons ci ratio: 3.958229e-03	ci left: 3.763622e-01	ci right 3.778555e-01	k: 610916	n:1620000
KS ci ratio: 1.015063e-01	ci left: 8.730577e-04	ci right 9.670128e-04	k: 1489	n:1620000
SPRY3   1620000 perm   1450 sec   (1117 perm/sec)   p_kst 9.191358e-04   p_cons 3.771086e-01   p_joint 1.696914e-03

Joint ci ratio: 7.620216e-02	ci left: 1.559082e-03	ci right 1.683190e-03	k: 2641	n:1630000
Cons ci ratio: 3.946100e-03	ci left: 3.763608e-01	ci right 3.778495e-01	k: 614681	n:1630000
KS ci ratio: 1.010326e-01	ci left: 8.760730e-04	ci right 9.698866e-04	k: 1503	n:1630000
SPRY3   1630000 perm   1466 sec   (1112 perm/sec)   p_kst 9.220859e-04   p_cons 3.771049e-01   p_joint 1.620245e-03

Joint ci ratio: 7.598678e-02	ci left: 1.558548e-03	ci right 1.682247e-03	k: 2656	n:1640000
Cons ci ratio: 3.934215e-03	ci left: 3.763435e-01	ci right 3.778276e-01	k: 618420	n:1640000
KS ci ratio: 1.008987e-01	ci left: 8.731085e-04	ci right 9.664733e-04	k: 1507	n:1640000
SPRY3   1640000 perm   1482 sec   (1106 perm/sec)   p_kst 9.189024e-04   p_cons 3.770854e-01   p_joint 1.619512e-03

Joint ci ratio: 7.915330e-02	ci left: 1.425482e-03	ci right 1.543552e-03	k: 2448	n:1650000
Cons ci ratio: 3.922365e-03	ci left: 3.763350e-01	ci right 3.778146e-01	k: 622173	n:1650000
KS ci ratio: 1.005326e-01	ci left: 8.743157e-04	ci right 9.674504e-04	k: 1518	n:1650000
SPRY3   1650000 perm   1498 sec   (1101 perm/sec)   p_kst 9.200000e-04   p_cons 3.770745e-01   p_joint 1.483636e-03

Joint ci ratio: 7.891200e-02	ci left: 1.425752e-03	ci right 1.543468e-03	k: 2463	n:1660000
Cons ci ratio: 3.910562e-03	ci left: 3.763337e-01	ci right 3.778089e-01	k: 625938	n:1660000
KS ci ratio: 1.003019e-01	ci left: 8.731597e-04	ci right 9.659451e-04	k: 1525	n:1660000
SPRY3   1660000 perm   1514 sec   (1096 perm/sec)   p_kst 9.186747e-04   p_cons 3.770711e-01   p_joint 1.483735e-03

Joint ci ratio: 7.859355e-02	ci left: 1.428955e-03	ci right 1.546438e-03	k: 2483	n:1670000
Cons ci ratio: 3.898144e-03	ci left: 3.764193e-01	ci right 3.778901e-01	k: 629848	n:1670000
KS ci ratio: 9.981232e-02	ci left: 8.766885e-04	ci right 9.693677e-04	k: 1540	n:1670000
SPRY3   1670000 perm   1530 sec   (1091 perm/sec)   p_kst 9.221557e-04   p_cons 3.771545e-01   p_joint 1.486826e-03

Outputting figure to mutsig2_images.part000000000166/SPRY3.4_871_1670000_0.00092216_0.37715_0.0014868.png
                gene_name: SPRY3
               theta_stop: 0.100 
                    nperm: 1670000 
                     p_ks: 0.00092 
        ci_ks_bounds_left: 0.00088 
       ci_ks_bounds_right: 0.00097 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.0015 
     ci_joint_bounds_left: 0.0014 
    ci_joint_bounds_right: 0.0015 

Current progress: 41 percent done.
SPTAN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.371796e-02	ci left: 5.649396e-01	ci right 5.844169e-01	k: 5747	n:10000
Cons ci ratio: 2.624268e-02	ci left: 6.813348e-01	ci right 6.995541e-01	k: 6905	n:10000
KS ci ratio: 3.590659e-02	ci left: 5.338761e-01	ci right 5.534984e-01	k: 5437	n:10000
SPTAN1   10000 perm   3 sec   (3518 perm/sec)   p_kst 5.437000e-01   p_cons 6.905000e-01   p_joint 5.747000e-01

Outputting figure to mutsig2_images.part000000000166/SPTAN1.4_7658_10000_0.5437_0.6905_0.5747.png
                gene_name: SPTAN1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 44 percent done.
SPTLC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.983895e-02	ci left: 6.235661e-01	ci right 6.425563e-01	k: 6331	n:10000
Cons ci ratio: 4.372585e-02	ci left: 4.357256e-01	ci right 4.553061e-01	k: 4455	n:10000
KS ci ratio: 4.282578e-02	ci left: 4.460026e-01	ci right 4.656231e-01	k: 4558	n:10000
SPTLC3   10000 perm   2 sec   (5533 perm/sec)   p_kst 4.558000e-01   p_cons 4.455000e-01   p_joint 6.331000e-01

Outputting figure to mutsig2_images.part000000000166/SPTLC3.4_1707_10000_0.4558_0.4455_0.6331.png
                gene_name: SPTLC3
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 46 percent done.
SRBD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.412351e-02	ci left: 7.164367e-01	ci right 7.340319e-01	k: 7253	n:10000
KS ci ratio: 1.291762e-02	ci left: 8.961077e-01	ci right 9.078569e-01	k: 9021	n:10000
SRBD1   10000 perm   2 sec   (5185 perm/sec)   p_kst 9.021000e-01   p_cons 7.253000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000166/SRBD1.4_3068_10000_0.9021_0.7253_1.png
                gene_name: SRBD1
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 49 percent done.
SPON1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.151877e-02	ci left: 5.976484e-01	ci right 6.168891e-01	k: 6073	n:10000
Cons ci ratio: 2.657465e-02	ci left: 6.758935e-01	ci right 6.941986e-01	k: 6851	n:10000
KS ci ratio: 6.964110e-02	ci left: 2.321499e-01	ci right 2.490015e-01	k: 2405	n:10000
SPON1   10000 perm   2 sec   (5553 perm/sec)   p_kst 2.405000e-01   p_cons 6.851000e-01   p_joint 6.073000e-01

Outputting figure to mutsig2_images.part000000000166/SPON1.3_2487_10000_0.2405_0.6851_0.6073.png
                gene_name: SPON1
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 51 percent done.
SPRED1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.036150e-01	ci left: 1.186757e-01	ci right 1.317435e-01	k: 1251	n:10000
Cons ci ratio: 1.797419e-01	ci left: 4.130699e-02	ci right 4.956044e-02	k: 453	n:10000
KS ci ratio: 1.180551e-01	ci left: 9.340841e-02	ci right 1.052262e-01	k: 992	n:10000
SPRED1   10000 perm   2 sec   (6210 perm/sec)   p_kst 9.920000e-02   p_cons 4.530000e-02   p_joint 1.251000e-01

Joint ci ratio: 7.310144e-02	ci left: 1.210860e-01	ci right 1.303231e-01	k: 2513	n:20000
Cons ci ratio: 1.260130e-01	ci left: 4.323490e-02	ci right 4.909795e-02	k: 922	n:20000
KS ci ratio: 8.274106e-02	ci left: 9.670986e-02	ci right 1.051066e-01	k: 2017	n:20000
SPRED1   20000 perm   4 sec   (5434 perm/sec)   p_kst 1.008500e-01   p_cons 4.610000e-02   p_joint 1.256500e-01

Joint ci ratio: 3.922070e-02	ci left: 2.448760e-01	ci right 2.547058e-01	k: 7493	n:30000
Cons ci ratio: 1.028705e-01	ci left: 4.378695e-02	ci right 4.856811e-02	k: 1384	n:30000
KS ci ratio: 6.667965e-02	ci left: 9.984504e-02	ci right 1.067653e-01	k: 3098	n:30000
SPRED1   30000 perm   6 sec   (5141 perm/sec)   p_kst 1.032667e-01   p_cons 4.613333e-02   p_joint 2.497667e-01

Joint ci ratio: 4.711046e-02	ci left: 1.440629e-01	ci right 1.510384e-01	k: 5901	n:40000
Cons ci ratio: 8.833088e-02	ci left: 4.484853e-02	ci right 4.901756e-02	k: 1876	n:40000
KS ci ratio: 5.818716e-02	ci left: 9.892719e-02	ci right 1.048807e-01	k: 4075	n:40000
SPRED1   40000 perm   8 sec   (4913 perm/sec)   p_kst 1.018750e-01   p_cons 4.690000e-02   p_joint 1.475250e-01

Outputting figure to mutsig2_images.part000000000166/SPRED1.3_1363_40000_0.10187_0.0469_0.14752.png
                gene_name: SPRED1
               theta_stop: 0.088 
                    nperm: 40000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.099 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.047 
      ci_cons_bounds_left: 0.045 
     ci_cons_bounds_right: 0.049 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 54 percent done.
SPTLC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.182535e-01	ci left: 9.311639e-02	ci right 1.049184e-01	k: 989	n:10000
KS ci ratio: 2.041202e-02	ci left: 7.785383e-01	ci right 7.946944e-01	k: 7867	n:10000
SPTLC2   10000 perm   2 sec   (5988 perm/sec)   p_kst 7.867000e-01   p_cons 9.890000e-02   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 8.383109e-02	ci left: 9.440373e-02	ci right 1.027134e-01	k: 1970	n:20000
KS ci ratio: 1.435590e-02	ci left: 7.827736e-01	ci right 7.941424e-01	k: 15770	n:20000
SPTLC2   20000 perm   4 sec   (5239 perm/sec)   p_kst 7.885000e-01   p_cons 9.850000e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000166/SPTLC2.3_1737_20000_0.7885_0.0985_1.png
                gene_name: SPTLC2
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.099 
      ci_cons_bounds_left: 0.094 
     ci_cons_bounds_right: 0.10 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 56 percent done.
SQLE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.003189e-02	ci left: 6.205509e-01	ci right 6.395732e-01	k: 6301	n:10000
KS ci ratio: 3.165769e-02	ci left: 5.955400e-01	ci right 6.147987e-01	k: 6052	n:10000
SQLE   10000 perm   2 sec   (6043 perm/sec)   p_kst 6.052000e-01   p_cons 6.301000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000166/SQLE.3_1668_10000_0.6052_0.6301_1.png
                gene_name: SQLE
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 59 percent done.
SRCRB4D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.880045e-02	ci left: 6.399554e-01	ci right 6.587575e-01	k: 6494	n:10000
KS ci ratio: 1.664326e-02	ci left: 8.400990e-01	ci right 8.542981e-01	k: 8473	n:10000
SRCRB4D   10000 perm   2 sec   (5791 perm/sec)   p_kst 8.473000e-01   p_cons 6.494000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000166/SRCRB4D.3_1768_10000_0.8473_0.6494_1.png
                gene_name: SRCRB4D
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 61 percent done.
SREBF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.355520e-02	ci left: 7.259294e-01	ci right 7.433338e-01	k: 7347	n:10000
KS ci ratio: 2.847238e-02	ci left: 6.451864e-01	ci right 6.639235e-01	k: 6546	n:10000
SREBF2   10000 perm   2 sec   (5084 perm/sec)   p_kst 6.546000e-01   p_cons 7.347000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000166/SREBF2.3_3502_10000_0.6546_0.7347_1.png
                gene_name: SREBF2
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 63 percent done.
SRFBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.234410e-01	ci left: 8.591861e-02	ci right 9.732058e-02	k: 915	n:10000
Cons ci ratio: 5.540393e-02	ci left: 3.242591e-01	ci right 3.428380e-01	k: 3335	n:10000
KS ci ratio: 1.950999e-01	ci left: 3.500453e-02	ci right 4.266711e-02	k: 387	n:10000
SRFBP1   10000 perm   2 sec   (6329 perm/sec)   p_kst 3.870000e-02   p_cons 3.335000e-01   p_joint 9.150000e-02

Joint ci ratio: 7.423726e-02	ci left: 1.177895e-01	ci right 1.269206e-01	k: 2446	n:20000
Cons ci ratio: 4.036000e-02	ci left: 3.139842e-01	ci right 3.269681e-01	k: 6409	n:20000
KS ci ratio: 1.347404e-01	ci left: 3.785835e-02	ci right 4.337623e-02	k: 811	n:20000
SRFBP1   20000 perm   4 sec   (5471 perm/sec)   p_kst 4.055000e-02   p_cons 3.204500e-01   p_joint 1.223000e-01

Joint ci ratio: 5.982359e-02	ci left: 1.214419e-01	ci right 1.289642e-01	k: 3755	n:30000
Cons ci ratio: 3.204752e-02	ci left: 3.274011e-01	ci right 3.380979e-01	k: 9982	n:30000
KS ci ratio: 1.110656e-01	ci left: 3.764831e-02	ci right 4.210802e-02	k: 1195	n:30000
SRFBP1   30000 perm   6 sec   (5157 perm/sec)   p_kst 3.983333e-02   p_cons 3.327333e-01   p_joint 1.251667e-01

Joint ci ratio: 6.433721e-02	ci left: 8.218617e-02	ci right 8.767426e-02	k: 3396	n:40000
Cons ci ratio: 2.853885e-02	ci left: 3.159025e-01	ci right 3.250736e-01	k: 12819	n:40000
KS ci ratio: 9.549168e-02	ci left: 3.849139e-02	ci right 4.237569e-02	k: 1616	n:40000
SRFBP1   40000 perm   8 sec   (4962 perm/sec)   p_kst 4.040000e-02   p_cons 3.204750e-01   p_joint 8.490000e-02

Outputting figure to mutsig2_images.part000000000166/SRFBP1.3_1322_40000_0.0404_0.32048_0.0849.png
                gene_name: SRFBP1
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.040 
        ci_ks_bounds_left: 0.038 
       ci_ks_bounds_right: 0.042 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.085 
     ci_joint_bounds_left: 0.082 
    ci_joint_bounds_right: 0.088 

Current progress: 66 percent done.
SRPK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.709069e-02	ci left: 3.111584e-01	ci right 3.295464e-01	k: 3203	n:10000
Cons ci ratio: 1.307051e-02	ci left: 8.939531e-01	ci right 9.058128e-01	k: 9000	n:10000
KS ci ratio: 8.186790e-02	ci left: 1.788095e-01	ci right 1.941736e-01	k: 1864	n:10000
SRPK1   10000 perm   2 sec   (5818 perm/sec)   p_kst 1.864000e-01   p_cons 9.000000e-01   p_joint 3.203000e-01

Outputting figure to mutsig2_images.part000000000166/SRPK1.3_2032_10000_0.1864_0.9_0.3203.png
                gene_name: SRPK1
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 68 percent done.
SPOCD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.962739e-02	ci left: 6.268832e-01	ci right 6.458373e-01	k: 6364	n:10000
Cons ci ratio: 6.680851e-02	ci left: 2.474683e-01	ci right 2.646740e-01	k: 2560	n:10000
KS ci ratio: 3.300599e-02	ci left: 5.753695e-01	ci right 5.947809e-01	k: 5851	n:10000
SPOCD1   10000 perm   2 sec   (5131 perm/sec)   p_kst 5.851000e-01   p_cons 2.560000e-01   p_joint 6.364000e-01

Outputting figure to mutsig2_images.part000000000166/SPOCD1.2_3711_10000_0.5851_0.256_0.6364.png
                gene_name: SPOCD1
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 71 percent done.
SPOCK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.861731e-02	ci left: 6.428726e-01	ci right 6.616387e-01	k: 6523	n:10000
Cons ci ratio: 1.792416e-02	ci left: 8.195432e-01	ci right 8.344658e-01	k: 8271	n:10000
KS ci ratio: 6.219546e-02	ci left: 2.753738e-01	ci right 2.931520e-01	k: 2842	n:10000
SPOCK3   10000 perm   2 sec   (6609 perm/sec)   p_kst 2.842000e-01   p_cons 8.271000e-01   p_joint 6.523000e-01

Outputting figure to mutsig2_images.part000000000166/SPOCK3.2_1355_10000_0.2842_0.8271_0.6523.png
                gene_name: SPOCK3
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 73 percent done.
SPP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.683687e-03	ci left: 9.765289e-01	ci right 9.821870e-01	k: 9795	n:10000
Cons ci ratio: 4.031520e-02	ci left: 4.760594e-01	ci right 4.957488e-01	k: 4859	n:10000
KS ci ratio: 8.710826e-02	ci left: 1.610145e-01	ci right 1.757792e-01	k: 1683	n:10000
SPP2   10000 perm   1 sec   (6948 perm/sec)   p_kst 1.683000e-01   p_cons 4.859000e-01   p_joint 9.795000e-01

Outputting figure to mutsig2_images.part000000000166/SPP2.2_664_10000_0.1683_0.4859_0.9795.png
                gene_name: SPP2
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 76 percent done.
SPRYD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.681007e-02	ci left: 8.374510e-01	ci right 8.517477e-01	k: 8447	n:10000
Cons ci ratio: 8.830905e-02	ci left: 1.572823e-01	ci right 1.719136e-01	k: 1645	n:10000
KS ci ratio: 2.121254e-02	ci left: 7.651672e-01	ci right 7.816732e-01	k: 7735	n:10000
SPRYD3   10000 perm   2 sec   (6315 perm/sec)   p_kst 7.735000e-01   p_cons 1.645000e-01   p_joint 8.447000e-01

Outputting figure to mutsig2_images.part000000000166/SPRYD3.2_1373_10000_0.7735_0.1645_0.8447.png
                gene_name: SPRYD3
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 78 percent done.
SPTY2D1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.798239e-02	ci left: 5.058516e-01	ci right 5.255392e-01	k: 5157	n:10000
Cons ci ratio: 2.038162e-02	ci left: 7.790450e-01	ci right 7.951874e-01	k: 7872	n:10000
KS ci ratio: 8.455437e-02	ci left: 1.693677e-01	ci right 1.844210e-01	k: 1768	n:10000
SPTY2D1   10000 perm   2 sec   (5912 perm/sec)   p_kst 1.768000e-01   p_cons 7.872000e-01   p_joint 5.157000e-01

Outputting figure to mutsig2_images.part000000000166/SPTY2D1.2_2082_10000_0.1768_0.7872_0.5157.png
                gene_name: SPTY2D1
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 80 percent done.
SRD5A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.920119e-01	ci left: 1.511403e-02	ci right 2.037228e-02	k: 176	n:10000
Cons ci ratio: 2.625735e-01	ci left: 1.893425e-02	ci right 2.474894e-02	k: 217	n:10000
KS ci ratio: 1.733853e-02	ci left: 8.290021e-01	ci right 8.436014e-01	k: 8364	n:10000
SRD5A1   10000 perm   2 sec   (6564 perm/sec)   p_kst 8.364000e-01   p_cons 2.170000e-02   p_joint 1.760000e-02

Joint ci ratio: 1.833216e-01	ci left: 2.029828e-02	ci right 2.444220e-02	k: 446	n:20000
Cons ci ratio: 1.850223e-01	ci left: 1.991636e-02	ci right 2.402425e-02	k: 438	n:20000
KS ci ratio: 1.236023e-02	ci left: 8.289217e-01	ci right 8.392810e-01	k: 16683	n:20000
SRD5A1   20000 perm   3 sec   (5731 perm/sec)   p_kst 8.341500e-01   p_cons 2.190000e-02   p_joint 2.230000e-02

Joint ci ratio: 1.430065e-01	ci left: 2.268361e-02	ci right 2.620931e-02	k: 732	n:30000
Cons ci ratio: 1.475034e-01	ci left: 2.130123e-02	ci right 2.472534e-02	k: 689	n:30000
KS ci ratio: 1.010348e-02	ci left: 8.295723e-01	ci right 8.380296e-01	k: 25015	n:30000
SRD5A1   30000 perm   6 sec   (5438 perm/sec)   p_kst 8.338333e-01   p_cons 2.296667e-02   p_joint 2.440000e-02

Joint ci ratio: 1.321460e-01	ci left: 2.010091e-02	ci right 2.296914e-02	k: 860	n:40000
Cons ci ratio: 1.280273e-01	ci left: 2.143209e-02	ci right 2.438773e-02	k: 915	n:40000
KS ci ratio: 8.730327e-03	ci left: 8.307709e-01	ci right 8.380805e-01	k: 33378	n:40000
SRD5A1   40000 perm   8 sec   (5228 perm/sec)   p_kst 8.344500e-01   p_cons 2.287500e-02   p_joint 2.150000e-02

Joint ci ratio: 9.742943e-02	ci left: 2.983005e-02	ci right 3.290468e-02	k: 1567	n:50000
Cons ci ratio: 1.151303e-01	ci left: 2.135392e-02	ci right 2.398191e-02	k: 1132	n:50000
KS ci ratio: 7.794754e-03	ci left: 8.316566e-01	ci right 8.381844e-01	k: 41747	n:50000
SRD5A1   50000 perm   10 sec   (5079 perm/sec)   p_kst 8.349400e-01   p_cons 2.264000e-02   p_joint 3.134000e-02

Joint ci ratio: 8.842285e-02	ci left: 3.031249e-02	ci right 3.313305e-02	k: 1902	n:60000
Cons ci ratio: 1.042628e-01	ci left: 2.181533e-02	ci right 2.423111e-02	k: 1380	n:60000
KS ci ratio: 7.096816e-03	ci left: 8.326769e-01	ci right 8.386239e-01	k: 50140	n:60000
SRD5A1   60000 perm   12 sec   (4941 perm/sec)   p_kst 8.356667e-01   p_cons 2.300000e-02   p_joint 3.170000e-02

Joint ci ratio: 8.165822e-02	ci left: 3.056845e-02	ci right 3.318483e-02	k: 2230	n:70000
Cons ci ratio: 9.607697e-02	ci left: 2.211142e-02	ci right 2.435691e-02	k: 1625	n:70000
KS ci ratio: 6.574688e-03	ci left: 8.327182e-01	ci right 8.382254e-01	k: 58484	n:70000
SRD5A1   70000 perm   15 sec   (4816 perm/sec)   p_kst 8.354857e-01   p_cons 2.321429e-02   p_joint 3.185714e-02

Outputting figure to mutsig2_images.part000000000166/SRD5A1.2_800_70000_0.83549_0.023214_0.031857.png
                gene_name: SRD5A1
               theta_stop: 0.096 
                    nperm: 70000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.023 
      ci_cons_bounds_left: 0.022 
     ci_cons_bounds_right: 0.024 
                  p_joint: 0.032 
     ci_joint_bounds_left: 0.031 
    ci_joint_bounds_right: 0.033 

Current progress: 83 percent done.
SRD5A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.541692e-02	ci left: 6.949445e-01	ci right 7.129366e-01	k: 7040	n:10000
Cons ci ratio: 7.204855e-02	ci left: 2.201034e-01	ci right 2.366552e-01	k: 2283	n:10000
KS ci ratio: 2.758983e-02	ci left: 6.593767e-01	ci right 6.779249e-01	k: 6687	n:10000
SRD5A2   10000 perm   1 sec   (6720 perm/sec)   p_kst 6.687000e-01   p_cons 2.283000e-01   p_joint 7.040000e-01

Outputting figure to mutsig2_images.part000000000166/SRD5A2.2_784_10000_0.6687_0.2283_0.704.png
                gene_name: SRD5A2
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 85 percent done.
SRD5A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.993082e-02	ci left: 7.865466e-01	ci right 8.024815e-01	k: 7946	n:10000
Cons ci ratio: 1.481906e-02	ci left: 8.683587e-01	ci right 8.814221e-01	k: 8750	n:10000
KS ci ratio: 9.784492e-02	ci left: 1.314920e-01	ci right 1.451194e-01	k: 1382	n:10000
SRD5A3   10000 perm   2 sec   (6655 perm/sec)   p_kst 1.382000e-01   p_cons 8.750000e-01   p_joint 7.946000e-01

Outputting figure to mutsig2_images.part000000000166/SRD5A3.2_977_10000_0.1382_0.875_0.7946.png
                gene_name: SRD5A3
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 88 percent done.
SREBF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.721419e-02	ci left: 2.451943e-01	ci right 2.623493e-01	k: 2537	n:10000
Cons ci ratio: 7.568707e-02	ci left: 2.034324e-01	ci right 2.195360e-01	k: 2114	n:10000
KS ci ratio: 2.670404e-02	ci left: 6.737778e-01	ci right 6.921155e-01	k: 6830	n:10000
SREBF1   10000 perm   2 sec   (5126 perm/sec)   p_kst 6.830000e-01   p_cons 2.114000e-01   p_joint 2.537000e-01

Outputting figure to mutsig2_images.part000000000166/SREBF1.2_3614_10000_0.683_0.2114_0.2537.png
                gene_name: SREBF1
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 90 percent done.
SRF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.483822e-01	ci left: 2.127733e-02	ci right 2.740406e-02	k: 242	n:10000
Cons ci ratio: 2.115267e-01	ci left: 2.968021e-02	ci right 3.679509e-02	k: 331	n:10000
KS ci ratio: 3.239796e-02	ci left: 5.843990e-01	ci right 6.037461e-01	k: 5941	n:10000
SRF   10000 perm   2 sec   (6144 perm/sec)   p_kst 5.941000e-01   p_cons 3.310000e-02   p_joint 2.420000e-02

Joint ci ratio: 1.224394e-01	ci left: 4.575777e-02	ci right 5.177429e-02	k: 974	n:20000
Cons ci ratio: 1.442662e-01	ci left: 3.302649e-02	ci right 3.820965e-02	k: 711	n:20000
KS ci ratio: 2.265920e-02	ci left: 5.925697e-01	ci right 6.062013e-01	k: 11988	n:20000
SRF   20000 perm   4 sec   (5401 perm/sec)   p_kst 5.994000e-01   p_cons 3.555000e-02   p_joint 4.870000e-02

Joint ci ratio: 1.213123e-01	ci left: 3.158952e-02	ci right 3.570144e-02	k: 1008	n:30000
Cons ci ratio: 1.187775e-01	ci left: 3.294884e-02	ci right 3.714183e-02	k: 1050	n:30000
KS ci ratio: 1.847582e-02	ci left: 5.944971e-01	ci right 6.056169e-01	k: 18002	n:30000
SRF   30000 perm   6 sec   (5114 perm/sec)   p_kst 6.000667e-01   p_cons 3.500000e-02   p_joint 3.360000e-02

Joint ci ratio: 1.054798e-01	ci left: 3.161190e-02	ci right 3.515627e-02	k: 1334	n:40000
Cons ci ratio: 1.032984e-01	ci left: 3.295217e-02	ci right 3.656578e-02	k: 1389	n:40000
KS ci ratio: 1.609892e-02	ci left: 5.922990e-01	ci right 6.019369e-01	k: 23885	n:40000
SRF   40000 perm   8 sec   (4931 perm/sec)   p_kst 5.971250e-01   p_cons 3.472500e-02   p_joint 3.335000e-02

Joint ci ratio: 9.723753e-02	ci left: 2.994722e-02	ci right 3.302750e-02	k: 1573	n:50000
Cons ci ratio: 9.282289e-02	ci left: 3.283913e-02	ci right 3.605522e-02	k: 1721	n:50000
KS ci ratio: 1.435409e-02	ci left: 5.943279e-01	ci right 6.029407e-01	k: 29932	n:50000
SRF   50000 perm   10 sec   (4781 perm/sec)   p_kst 5.986400e-01   p_cons 3.442000e-02   p_joint 3.146000e-02

Outputting figure to mutsig2_images.part000000000166/SRF.2_1555_50000_0.59864_0.03442_0.03146.png
                gene_name: SRF
               theta_stop: 0.097 
                    nperm: 50000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.034 
      ci_cons_bounds_left: 0.033 
     ci_cons_bounds_right: 0.036 
                  p_joint: 0.031 
     ci_joint_bounds_left: 0.030 
    ci_joint_bounds_right: 0.033 

Current progress: 93 percent done.
SRL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.590614e-02	ci left: 4.118954e-01	ci right 4.313503e-01	k: 4216	n:10000
KS ci ratio: 4.645628e-02	ci left: 4.061158e-01	ci right 4.255332e-01	k: 4158	n:10000
SRL   10000 perm   2 sec   (6277 perm/sec)   p_kst 4.158000e-01   p_cons 4.216000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000166/SRL.2_1446_10000_0.4158_0.4216_1.png
                gene_name: SRL
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
SRP72
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.280774e-02	ci left: 8.976473e-01	ci right 9.093165e-01	k: 9036	n:10000
Cons ci ratio: 3.728889e-02	ci left: 5.150563e-01	ci right 5.347292e-01	k: 5249	n:10000
KS ci ratio: 2.923175e-02	ci left: 6.331167e-01	ci right 6.520002e-01	k: 6426	n:10000
SRP72   10000 perm   2 sec   (5922 perm/sec)   p_kst 6.426000e-01   p_cons 5.249000e-01   p_joint 9.036000e-01

Outputting figure to mutsig2_images.part000000000166/SRP72.2_2092_10000_0.6426_0.5249_0.9036.png
                gene_name: SRP72
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 98 percent done.
SRPR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.424714e-03	ci left: 9.784504e-01	ci right 9.838641e-01	k: 9813	n:10000
Cons ci ratio: 1.836104e-02	ci left: 8.124288e-01	ci right 8.275843e-01	k: 8201	n:10000
KS ci ratio: 2.874988e-02	ci left: 6.407601e-01	ci right 6.595523e-01	k: 6502	n:10000
SRPR   10000 perm   2 sec   (5941 perm/sec)   p_kst 6.502000e-01   p_cons 8.201000e-01   p_joint 9.813000e-01

Outputting figure to mutsig2_images.part000000000166/SRPR.2_1973_10000_0.6502_0.8201_0.9813.png
                gene_name: SRPR
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000166
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 166 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1726>
Subject: Job 8004581: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1726>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000167> was used as the working directory.
Started at Sun Nov 11 15:20:23 2012
Results reported at Sun Nov 11 16:18:39 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000167.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000167.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 167  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000167.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   3494.29 sec.
    Max Memory :      5437 MB
    Max Swap   :      7919 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
167
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 167
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 167: processing genes 15019 - 15108
Calculating significance of each gene.
Using projection method.
15019	SRPX	5.374865e-01
15020	SRPX2	2.498731e-01
15021	SRR	1
15022	SRRD	1
15023	SRRM1	6.627156e-01
15024	SRRM2	9.992282e-01
15025	SRRM3	1
15026	SRRM4	6.098341e-01
15027	SRRT	9.840575e-01
15028	SRXN1	1.090304e-01
15029	SRY	4.515720e-01
15030	SS18	2.604389e-01
15031	SS18L1	5.781323e-01
15032	SS18L2	1
15033	SSB	1
15034	SSBP1	2.824517e-01
15035	SSBP2	1
15036	SSBP3	5.565129e-01
15037	SSBP4	1
15038	SSFA2	4.423358e-01
15039	SSH1	9.783396e-01
15040	SSH2	3.282693e-01
15041	SSH3	9.593114e-01
15042	SSNA1	1
15043	SSPN	1.308766e-01
15044	SSPO	9.999687e-01
15045	SSR1	1
15046	SSR2	5.179820e-01
15047	SSR3	1
15048	SSR4	1
15049	SSRP1	7.998363e-01
15050	SSSCA1	1
15051	SST	3.266199e-01
15052	SSTR1	2.236632e-01
15053	SSTR2	2.857089e-01
15054	SSTR3	1
15055	SSTR4	1
15056	SSTR5	8.049919e-01
15057	SSU72	4.981426e-01
15058	SSX1	3.286922e-01
15059	SSX2IP	6.211616e-01
15060	SSX3	1
15061	SSX5	1.387469e-01
15062	SSX7	1
15063	ST13	6.352415e-01
15064	ST14	8.307768e-01
15065	ST18	1.325793e-01
15066	ST20	5.315493e-02
15067	ST3GAL1	7.240490e-02
15068	ST3GAL2	1
15069	ST3GAL3	1
15070	ST3GAL4	2.852010e-01
15071	ST3GAL5	6.004118e-01
15072	ST3GAL6	2.231316e-01
15073	ST5	9.232757e-01
15074	ST6GAL1	5.297980e-01
15075	ST6GAL2	7.416442e-01
15076	ST6GALNAC1	8.422985e-01
15077	ST6GALNAC2	1
15078	ST6GALNAC3	3.613914e-02
15079	ST6GALNAC4	7.375697e-01
15080	ST6GALNAC5	1.825568e-01
15081	ST6GALNAC6	1
15082	ST7	8.207486e-01
15083	ST7L	1
15084	ST8SIA1	7.291931e-01
15085	ST8SIA2	2.982822e-01
15086	ST8SIA3	1
15087	ST8SIA4	1.639842e-01
15088	ST8SIA5	1
15089	ST8SIA6	2.160683e-01
15090	STAB1	9.999455e-01
15091	STAB2	9.980740e-01
15092	STAC	1.261011e-01
15093	STAC2	2.895181e-01
15094	STAC3	8.449753e-01
15095	STAG1	1
15096	STAG2	4.186055e-01
15097	STAG3	9.871824e-01
15098	STAG3L2	1
15099	STAG3L4	1
15100	STAM	3.552109e-01
15101	STAM2	5.795693e-01
15102	STAMBP	5.362856e-01
15103	STAMBPL1	1
15104	STAP1	1
15105	STAP2	1.027584e-01
15106	STAR	2.147268e-02
15107	STARD10	1
15108	STARD13	5.216512e-01
Done

Running MutSig 2:
Scatter job 167: processing genes 15019 - 15108
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SSPO
Processing conservation and coverage...
62% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.471812e-02	ci left: 2.596344e-01	ci right 2.771008e-01	k: 2683	n:10000
Cons ci ratio: 5.270076e-02	ci left: 3.467078e-01	ci right 3.655760e-01	k: 3561	n:10000
KS ci ratio: 1.093867e-01	ci left: 1.075413e-01	ci right 1.200846e-01	k: 1137	n:10000
SSPO   10000 perm   4 sec   (2606 perm/sec)   p_kst 1.137000e-01   p_cons 3.561000e-01   p_joint 2.683000e-01

Joint ci ratio: 6.780037e-02	ci left: 1.383233e-01	ci right 1.480806e-01	k: 2863	n:20000
Cons ci ratio: 3.612686e-02	ci left: 3.638012e-01	ci right 3.772365e-01	k: 7410	n:20000
KS ci ratio: 7.916654e-02	ci left: 1.048604e-01	ci right 1.135536e-01	k: 2183	n:20000
SSPO   20000 perm   10 sec   (2006 perm/sec)   p_kst 1.091500e-01   p_cons 3.705000e-01   p_joint 1.431500e-01

Outputting figure to mutsig2_images.part000000000167/SSPO.24_15875_20000_0.10915_0.3705_0.14315.png
                gene_name: SSPO
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 2 percent done.
STAB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.847868e-02	ci left: 6.450858e-01	ci right 6.638241e-01	k: 6545	n:10000
Cons ci ratio: 5.059670e-02	ci left: 3.654989e-01	ci right 3.845739e-01	k: 3750	n:10000
KS ci ratio: 2.678422e-02	ci left: 6.724682e-01	ci right 6.908258e-01	k: 6817	n:10000
STAB2   10000 perm   3 sec   (3726 perm/sec)   p_kst 6.817000e-01   p_cons 3.750000e-01   p_joint 6.545000e-01

Outputting figure to mutsig2_images.part000000000167/STAB2.22_7932_10000_0.6817_0.375_0.6545.png
                gene_name: STAB2
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.66 

Current progress: 4 percent done.
SRRM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.206990e-02	ci left: 5.893165e-01	ci right 6.086258e-01	k: 5990	n:10000
KS ci ratio: 6.223756e-03	ci left: 9.722779e-01	ci right 9.784409e-01	k: 9755	n:10000
SRRM2   10000 perm   2 sec   (4222 perm/sec)   p_kst 9.755000e-01   p_cons 5.990000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000167/SRRM2.13_8315_10000_0.9755_0.599_1.png
                gene_name: SRRM2
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 6 percent done.
ST18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.146594e-02	ci left: 5.984516e-01	ci right 6.176854e-01	k: 6081	n:10000
Cons ci ratio: 1.980869e-02	ci left: 7.885747e-01	ci right 8.044522e-01	k: 7966	n:10000
KS ci ratio: 4.566232e-02	ci left: 4.144867e-01	ci right 4.339575e-01	k: 4242	n:10000
ST18   10000 perm   2 sec   (5477 perm/sec)   p_kst 4.242000e-01   p_cons 7.966000e-01   p_joint 6.081000e-01

Outputting figure to mutsig2_images.part000000000167/ST18.12_3224_10000_0.4242_0.7966_0.6081.png
                gene_name: ST18
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 8 percent done.
SSH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.261114e-01	ci left: 8.251809e-02	ci right 9.372320e-02	k: 880	n:10000
Cons ci ratio: 5.711794e-03	ci left: 9.763158e-01	ci right 9.820003e-01	k: 9793	n:10000
KS ci ratio: 2.526781e-01	ci left: 2.052656e-02	ci right 2.655540e-02	k: 234	n:10000
SSH2   10000 perm   2 sec   (4938 perm/sec)   p_kst 2.340000e-02   p_cons 9.793000e-01   p_joint 8.800000e-02

Joint ci ratio: 1.051694e-01	ci left: 6.152427e-02	ci right 6.840287e-02	k: 1298	n:20000
Cons ci ratio: 4.161619e-03	ci left: 9.758712e-01	ci right 9.799882e-01	k: 19560	n:20000
KS ci ratio: 1.747179e-01	ci left: 2.240180e-02	ci right 2.673793e-02	k: 490	n:20000
SSH2   20000 perm   4 sec   (4549 perm/sec)   p_kst 2.450000e-02   p_cons 9.780000e-01   p_joint 6.490000e-02

Joint ci ratio: 9.782863e-02	ci left: 4.830953e-02	ci right 5.331125e-02	k: 1523	n:30000
Cons ci ratio: 3.433379e-03	ci left: 9.757927e-01	ci right 9.791806e-01	k: 29326	n:30000
KS ci ratio: 1.420166e-01	ci left: 2.300533e-02	ci right 2.655419e-02	k: 742	n:30000
SSH2   30000 perm   7 sec   (4396 perm/sec)   p_kst 2.473333e-02   p_cons 9.775333e-01   p_joint 5.076667e-02

Joint ci ratio: 8.554608e-02	ci left: 4.773746e-02	ci right 5.202819e-02	k: 1994	n:40000
Cons ci ratio: 2.995352e-03	ci left: 9.756896e-01	ci right 9.786406e-01	k: 39088	n:40000
KS ci ratio: 1.227155e-01	ci left: 2.334655e-02	ci right 2.642295e-02	k: 994	n:40000
SSH2   40000 perm   9 sec   (4284 perm/sec)   p_kst 2.485000e-02   p_cons 9.772000e-01   p_joint 4.985000e-02

Joint ci ratio: 7.851974e-02	ci left: 4.561265e-02	ci right 4.936011e-02	k: 2373	n:50000
Cons ci ratio: 2.671641e-03	ci left: 9.759770e-01	ci right 9.786072e-01	k: 48866	n:50000
KS ci ratio: 1.097038e-01	ci left: 2.353237e-02	ci right 2.628317e-02	k: 1244	n:50000
SSH2   50000 perm   12 sec   (4198 perm/sec)   p_kst 2.488000e-02   p_cons 9.773200e-01   p_joint 4.746000e-02

Joint ci ratio: 6.774763e-02	ci left: 5.105672e-02	ci right 5.465336e-02	k: 3170	n:60000
Cons ci ratio: 2.434300e-03	ci left: 9.761791e-01	ci right 9.785744e-01	k: 58644	n:60000
KS ci ratio: 1.003525e-01	ci left: 2.355408e-02	ci right 2.605884e-02	k: 1487	n:60000
SSH2   60000 perm   15 sec   (4111 perm/sec)   p_kst 2.478333e-02   p_cons 9.774000e-01   p_joint 5.283333e-02

Joint ci ratio: 6.318789e-02	ci left: 5.046519e-02	ci right 5.377206e-02	k: 3647	n:70000
Cons ci ratio: 2.240472e-03	ci left: 9.765351e-01	ci right 9.787393e-01	k: 68436	n:70000
KS ci ratio: 9.263520e-02	ci left: 2.378620e-02	ci right 2.611055e-02	k: 1745	n:70000
SSH2   70000 perm   17 sec   (4037 perm/sec)   p_kst 2.492857e-02   p_cons 9.776571e-01   p_joint 5.210000e-02

Outputting figure to mutsig2_images.part000000000167/SSH2.8_4332_70000_0.024929_0.97766_0.0521.png
                gene_name: SSH2
               theta_stop: 0.093 
                    nperm: 70000 
                     p_ks: 0.025 
        ci_ks_bounds_left: 0.024 
       ci_ks_bounds_right: 0.026 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.052 
     ci_joint_bounds_left: 0.050 
    ci_joint_bounds_right: 0.054 

Current progress: 10 percent done.
SSFA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.875766e-02	ci left: 4.957504e-01	ci right 5.154464e-01	k: 5056	n:10000
Cons ci ratio: 7.023701e-02	ci left: 2.290880e-01	ci right 2.458652e-01	k: 2374	n:10000
KS ci ratio: 2.970424e-02	ci left: 6.256770e-01	ci right 6.446442e-01	k: 6352	n:10000
SSFA2   10000 perm   2 sec   (5138 perm/sec)   p_kst 6.352000e-01   p_cons 2.374000e-01   p_joint 5.056000e-01

Outputting figure to mutsig2_images.part000000000167/SSFA2.7_3948_10000_0.6352_0.2374_0.5056.png
                gene_name: SSFA2
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 12 percent done.
ST8SIA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.262256e-02	ci left: 1.448193e-01	ci right 1.589842e-01	k: 1518	n:10000
Cons ci ratio: 6.068661e-02	ci left: 2.853789e-01	ci right 3.033411e-01	k: 2943	n:10000
KS ci ratio: 1.130045e-01	ci left: 1.012990e-01	ci right 1.135307e-01	k: 1073	n:10000
ST8SIA6   10000 perm   1 sec   (6857 perm/sec)   p_kst 1.073000e-01   p_cons 2.943000e-01   p_joint 1.518000e-01

Joint ci ratio: 6.937729e-02	ci left: 1.328538e-01	ci right 1.424518e-01	k: 2752	n:20000
Cons ci ratio: 4.183211e-02	ci left: 2.986726e-01	ci right 3.114841e-01	k: 6101	n:20000
KS ci ratio: 7.967941e-02	ci left: 1.036324e-01	ci right 1.122820e-01	k: 2158	n:20000
ST8SIA6   20000 perm   3 sec   (6003 perm/sec)   p_kst 1.079000e-01   p_cons 3.050500e-01   p_joint 1.376000e-01

Outputting figure to mutsig2_images.part000000000167/ST8SIA6.7_1229_20000_0.1079_0.30505_0.1376.png
                gene_name: ST8SIA6
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 15 percent done.
STAB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.046204e-01	ci left: 1.166232e-01	ci right 1.295972e-01	k: 1230	n:10000
Cons ci ratio: 2.740328e-02	ci left: 6.623971e-01	ci right 6.809028e-01	k: 6717	n:10000
KS ci ratio: 1.835874e-01	ci left: 3.958555e-02	ci right 4.768301e-02	k: 435	n:10000
STAB1   10000 perm   2 sec   (4137 perm/sec)   p_kst 4.350000e-02   p_cons 6.717000e-01   p_joint 1.230000e-01

Joint ci ratio: 7.223315e-02	ci left: 1.236945e-01	ci right 1.330139e-01	k: 2566	n:20000
Cons ci ratio: 1.952289e-02	ci left: 6.618262e-01	ci right 6.749248e-01	k: 13368	n:20000
KS ci ratio: 1.342244e-01	ci left: 3.814864e-02	ci right 4.368584e-02	k: 817	n:20000
STAB1   20000 perm   5 sec   (3842 perm/sec)   p_kst 4.085000e-02   p_cons 6.684000e-01   p_joint 1.283000e-01

Joint ci ratio: 7.779236e-02	ci left: 7.498971e-02	ci right 8.109230e-02	k: 2340	n:30000
Cons ci ratio: 1.525708e-02	ci left: 6.822538e-01	ci right 6.927765e-01	k: 20626	n:30000
KS ci ratio: 1.101102e-01	ci left: 3.829725e-02	ci right 4.279228e-02	k: 1215	n:30000
STAB1   30000 perm   8 sec   (3734 perm/sec)   p_kst 4.050000e-02   p_cons 6.875333e-01   p_joint 7.800000e-02

Joint ci ratio: 6.183390e-02	ci left: 8.846989e-02	ci right 9.413960e-02	k: 3651	n:40000
Cons ci ratio: 1.402985e-02	ci left: 6.565377e-01	ci right 6.658389e-01	k: 26448	n:40000
KS ci ratio: 9.437205e-02	ci left: 3.939530e-02	ci right 4.332164e-02	k: 1653	n:40000
STAB1   40000 perm   11 sec   (3638 perm/sec)   p_kst 4.132500e-02   p_cons 6.612000e-01   p_joint 9.127500e-02

Outputting figure to mutsig2_images.part000000000167/STAB1.7_7989_40000_0.041325_0.6612_0.091275.png
                gene_name: STAB1
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.041 
        ci_ks_bounds_left: 0.039 
       ci_ks_bounds_right: 0.043 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.091 
     ci_joint_bounds_left: 0.088 
    ci_joint_bounds_right: 0.094 

Current progress: 17 percent done.
STAG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.434149e-02	ci left: 7.128025e-01	ci right 7.304682e-01	k: 7217	n:10000
Cons ci ratio: 3.888187e-02	ci left: 4.941505e-01	ci right 5.138471e-01	k: 5040	n:10000
KS ci ratio: 2.195589e-02	ci left: 7.527183e-01	ci right 7.695293e-01	k: 7612	n:10000
STAG2   10000 perm   2 sec   (4756 perm/sec)   p_kst 7.612000e-01   p_cons 5.040000e-01   p_joint 7.217000e-01

Outputting figure to mutsig2_images.part000000000167/STAG2.7_3939_10000_0.7612_0.504_0.7217.png
                gene_name: STAG2
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 19 percent done.
SRRM4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.585526e-01	ci left: 5.301669e-02	ci right 6.224312e-02	k: 575	n:10000
Cons ci ratio: 1.694391e-01	ci left: 4.648153e-02	ci right 5.518251e-02	k: 507	n:10000
KS ci ratio: 6.074508e-02	ci left: 2.849825e-01	ci right 3.029377e-01	k: 2939	n:10000
SRRM4   10000 perm   1 sec   (6751 perm/sec)   p_kst 2.939000e-01   p_cons 5.070000e-02   p_joint 5.750000e-02

Joint ci ratio: 1.184089e-01	ci left: 4.886604e-02	ci right 5.506504e-02	k: 1038	n:20000
Cons ci ratio: 1.205030e-01	ci left: 4.721434e-02	ci right 5.331725e-02	k: 1004	n:20000
KS ci ratio: 4.306753e-02	ci left: 2.865486e-01	ci right 2.992116e-01	k: 5857	n:20000
SRRM4   20000 perm   3 sec   (5991 perm/sec)   p_kst 2.928500e-01   p_cons 5.020000e-02   p_joint 5.190000e-02

Joint ci ratio: 8.619086e-02	ci left: 6.171330e-02	ci right 6.730473e-02	k: 1934	n:30000
Cons ci ratio: 1.013829e-01	ci left: 4.505525e-02	ci right 4.989954e-02	k: 1423	n:30000
KS ci ratio: 3.513344e-02	ci left: 2.880854e-01	ci right 2.984213e-01	k: 8797	n:30000
SRRM4   30000 perm   5 sec   (5714 perm/sec)   p_kst 2.932333e-01   p_cons 4.743333e-02   p_joint 6.446667e-02

Joint ci ratio: 7.167464e-02	ci left: 6.707586e-02	ci right 7.208684e-02	k: 2782	n:40000
Cons ci ratio: 8.776814e-02	ci left: 4.541146e-02	ci right 4.960455e-02	k: 1899	n:40000
KS ci ratio: 3.053078e-02	ci left: 2.873727e-01	ci right 2.963075e-01	k: 11673	n:40000
SRRM4   40000 perm   7 sec   (5494 perm/sec)   p_kst 2.918250e-01   p_cons 4.747500e-02   p_joint 6.955000e-02

Outputting figure to mutsig2_images.part000000000167/SRRM4.5_1888_40000_0.29183_0.047475_0.06955.png
                gene_name: SRRM4
               theta_stop: 0.088 
                    nperm: 40000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.047 
      ci_cons_bounds_left: 0.045 
     ci_cons_bounds_right: 0.050 
                  p_joint: 0.070 
     ci_joint_bounds_left: 0.067 
    ci_joint_bounds_right: 0.072 

Current progress: 21 percent done.
ST6GALNAC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.450458e-02	ci left: 2.609207e-01	ci right 2.784136e-01	k: 2696	n:10000
Cons ci ratio: 1.429301e-02	ci left: 8.762316e-01	ci right 8.889446e-01	k: 8827	n:10000
KS ci ratio: 9.079719e-02	ci left: 1.499203e-01	ci right 1.642801e-01	k: 1570	n:10000
ST6GALNAC3   10000 perm   2 sec   (6420 perm/sec)   p_kst 1.570000e-01   p_cons 8.827000e-01   p_joint 2.696000e-01

Outputting figure to mutsig2_images.part000000000167/ST6GALNAC3.5_952_10000_0.157_0.8827_0.2696.png
                gene_name: ST6GALNAC3
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 23 percent done.
STAG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.668597e-01	ci left: 4.792139e-02	ci right 5.674170e-02	k: 522	n:10000
Cons ci ratio: 4.005790e-02	ci left: 4.792569e-01	ci right 4.989495e-01	k: 4891	n:10000
KS ci ratio: 2.560455e-01	ci left: 1.996408e-02	ci right 2.591832e-02	k: 228	n:10000
STAG1   10000 perm   2 sec   (5009 perm/sec)   p_kst 2.280000e-02   p_cons 4.891000e-01   p_joint 5.220000e-02

Joint ci ratio: 9.873701e-02	ci left: 6.943202e-02	ci right 7.669269e-02	k: 1460	n:20000
Cons ci ratio: 2.845237e-02	ci left: 4.799502e-01	ci right 4.938536e-01	k: 9738	n:20000
KS ci ratio: 1.804519e-01	ci left: 2.096705e-02	ci right 2.517319e-02	k: 460	n:20000
STAG1   20000 perm   4 sec   (4729 perm/sec)   p_kst 2.300000e-02   p_cons 4.869000e-01   p_joint 7.300000e-02

Joint ci ratio: 1.016078e-01	ci left: 4.486009e-02	ci right 4.969474e-02	k: 1417	n:30000
Cons ci ratio: 2.321173e-02	ci left: 4.816620e-01	ci right 4.930071e-01	k: 14620	n:30000
KS ci ratio: 1.459945e-01	ci left: 2.175113e-02	ci right 2.520867e-02	k: 703	n:30000
STAG1   30000 perm   7 sec   (4593 perm/sec)   p_kst 2.343333e-02   p_cons 4.873333e-01   p_joint 4.723333e-02

Joint ci ratio: 1.096715e-01	ci left: 2.925013e-02	ci right 3.266841e-02	k: 1237	n:40000
Cons ci ratio: 2.061425e-02	ci left: 4.698708e-01	ci right 4.796829e-01	k: 18991	n:40000
KS ci ratio: 1.255255e-01	ci left: 2.230417e-02	ci right 2.531551e-02	k: 951	n:40000
STAG1   40000 perm   9 sec   (4501 perm/sec)   p_kst 2.377500e-02   p_cons 4.747750e-01   p_joint 3.092500e-02

Joint ci ratio: 7.552790e-02	ci left: 4.918599e-02	ci right 5.306634e-02	k: 2555	n:50000
Cons ci ratio: 1.844012e-02	ci left: 4.703346e-01	ci right 4.791084e-01	k: 23736	n:50000
KS ci ratio: 1.127599e-01	ci left: 2.226771e-02	ci right 2.494799e-02	k: 1179	n:50000
STAG1   50000 perm   11 sec   (4422 perm/sec)   p_kst 2.358000e-02   p_cons 4.747200e-01   p_joint 5.110000e-02

Joint ci ratio: 7.260369e-02	ci left: 4.464863e-02	ci right 4.802876e-02	k: 2779	n:60000
Cons ci ratio: 1.688832e-02	ci left: 4.690981e-01	ci right 4.771045e-01	k: 28386	n:60000
KS ci ratio: 9.853416e-02	ci left: 2.443223e-02	ci right 2.698059e-02	k: 1541	n:60000
STAG1   60000 perm   14 sec   (4342 perm/sec)   p_kst 2.568333e-02   p_cons 4.731000e-01   p_joint 4.631667e-02

Outputting figure to mutsig2_images.part000000000167/STAG1.5_3909_60000_0.025683_0.4731_0.046317.png
                gene_name: STAG1
               theta_stop: 0.099 
                    nperm: 60000 
                     p_ks: 0.026 
        ci_ks_bounds_left: 0.024 
       ci_ks_bounds_right: 0.027 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.046 
     ci_joint_bounds_left: 0.045 
    ci_joint_bounds_right: 0.048 

Current progress: 25 percent done.
STAG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.153307e-02	ci left: 7.598019e-01	ci right 7.764417e-01	k: 7682	n:10000
KS ci ratio: 6.844577e-03	ci left: 9.669936e-01	ci right 9.737287e-01	k: 9705	n:10000
STAG3   10000 perm   2 sec   (5171 perm/sec)   p_kst 9.705000e-01   p_cons 7.682000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000167/STAG3.5_3810_10000_0.9705_0.7682_1.png
                gene_name: STAG3
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 27 percent done.
STARD13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.518550e-02	ci left: 1.380551e-01	ci right 1.519524e-01	k: 1449	n:10000
Cons ci ratio: 2.659928e-02	ci left: 6.754905e-01	ci right 6.938018e-01	k: 6847	n:10000
KS ci ratio: 1.505339e-01	ci left: 5.870163e-02	ci right 6.835455e-02	k: 634	n:10000
STARD13   10000 perm   2 sec   (5844 perm/sec)   p_kst 6.340000e-02   p_cons 6.847000e-01   p_joint 1.449000e-01

Joint ci ratio: 7.449765e-02	ci left: 1.170516e-01	ci right 1.261587e-01	k: 2431	n:20000
Cons ci ratio: 1.921760e-02	ci left: 6.688105e-01	ci right 6.818385e-01	k: 13507	n:20000
KS ci ratio: 1.079048e-01	ci left: 5.855047e-02	ci right 6.527759e-02	k: 1237	n:20000
STARD13   20000 perm   4 sec   (5241 perm/sec)   p_kst 6.185000e-02   p_cons 6.753500e-01   p_joint 1.215500e-01

Joint ci ratio: 5.699523e-02	ci left: 1.323044e-01	ci right 1.400995e-01	k: 4085	n:30000
Cons ci ratio: 1.569069e-02	ci left: 6.700347e-01	ci right 6.806647e-01	k: 20261	n:30000
KS ci ratio: 8.755303e-02	ci left: 5.988461e-02	ci right 6.540046e-02	k: 1878	n:30000
STARD13   30000 perm   6 sec   (5069 perm/sec)   p_kst 6.260000e-02   p_cons 6.753667e-01   p_joint 1.361667e-01

Outputting figure to mutsig2_images.part000000000167/STARD13.5_3547_30000_0.0626_0.67537_0.13617.png
                gene_name: STARD13
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.063 
        ci_ks_bounds_left: 0.060 
       ci_ks_bounds_right: 0.065 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 29 percent done.
SRRM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.432174e-02	ci left: 5.562179e-01	ci right 5.757437e-01	k: 5660	n:10000
Cons ci ratio: 4.875899e-02	ci left: 3.829118e-01	ci right 4.021508e-01	k: 3925	n:10000
KS ci ratio: 5.751282e-02	ci left: 3.079837e-01	ci right 3.263229e-01	k: 3171	n:10000
SRRM1   10000 perm   2 sec   (5925 perm/sec)   p_kst 3.171000e-01   p_cons 3.925000e-01   p_joint 5.660000e-01

Outputting figure to mutsig2_images.part000000000167/SRRM1.4_2783_10000_0.3171_0.3925_0.566.png
                gene_name: SRRM1
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 31 percent done.
ST3GAL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.282482e-02	ci left: 7.381561e-01	ci right 7.553000e-01	k: 7468	n:10000
KS ci ratio: 2.178682e-02	ci left: 7.555514e-01	ci right 7.722946e-01	k: 7640	n:10000
ST3GAL1   10000 perm   2 sec   (6488 perm/sec)   p_kst 7.640000e-01   p_cons 7.468000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000167/ST3GAL1.4_1047_10000_0.764_0.7468_1.png
                gene_name: ST3GAL1
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 33 percent done.
ST5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.616004e-02	ci left: 3.183032e-01	ci right 3.367974e-01	k: 3275	n:10000
Cons ci ratio: 2.672870e-02	ci left: 6.733749e-01	ci right 6.917187e-01	k: 6826	n:10000
KS ci ratio: 1.068598e-01	ci left: 1.122272e-01	ci right 1.249959e-01	k: 1185	n:10000
ST5   10000 perm   2 sec   (5496 perm/sec)   p_kst 1.185000e-01   p_cons 6.826000e-01   p_joint 3.275000e-01

Joint ci ratio: 4.745282e-02	ci left: 2.483255e-01	ci right 2.604460e-01	k: 5087	n:20000
Cons ci ratio: 1.888758e-02	ci left: 6.763995e-01	ci right 6.893473e-01	k: 13658	n:20000
KS ci ratio: 7.491910e-02	ci left: 1.158711e-01	ci right 1.249396e-01	k: 2407	n:20000
ST5   20000 perm   4 sec   (4913 perm/sec)   p_kst 1.203500e-01   p_cons 6.829000e-01   p_joint 2.543500e-01

Outputting figure to mutsig2_images.part000000000167/ST5.4_3490_20000_0.12035_0.6829_0.25435.png
                gene_name: ST5
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 35 percent done.
STAC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.260159e-02	ci left: 7.418966e-01	ci right 7.589573e-01	k: 7505	n:10000
KS ci ratio: 2.556943e-02	ci left: 6.924235e-01	ci right 7.104591e-01	k: 7015	n:10000
STAC   10000 perm   1 sec   (6685 perm/sec)   p_kst 7.015000e-01   p_cons 7.505000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000167/STAC.4_1253_10000_0.7015_0.7505_1.png
                gene_name: STAC
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 38 percent done.
STAR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.103741e-01	ci left: 1.057850e-01	ci right 1.182420e-01	k: 1119	n:10000
Cons ci ratio: 4.802080e-02	ci left: 3.901793e-01	ci right 4.094791e-01	k: 3998	n:10000
KS ci ratio: 1.397872e-01	ci left: 6.778282e-02	ci right 7.806763e-02	k: 728	n:10000
STAR   10000 perm   2 sec   (6236 perm/sec)   p_kst 7.280000e-02   p_cons 3.998000e-01   p_joint 1.119000e-01

Joint ci ratio: 7.221701e-02	ci left: 1.237437e-01	ci right 1.330646e-01	k: 2567	n:20000
Cons ci ratio: 3.402285e-02	ci left: 3.921037e-01	ci right 4.057257e-01	k: 7978	n:20000
KS ci ratio: 9.844654e-02	ci left: 6.982288e-02	ci right 7.710171e-02	k: 1468	n:20000
STAR   20000 perm   4 sec   (5604 perm/sec)   p_kst 7.340000e-02   p_cons 3.989000e-01   p_joint 1.283500e-01

Outputting figure to mutsig2_images.part000000000167/STAR.4_886_20000_0.0734_0.3989_0.12835.png
                gene_name: STAR
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.073 
        ci_ks_bounds_left: 0.070 
       ci_ks_bounds_right: 0.077 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 40 percent done.
SRPX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.966194e-02	ci left: 7.910089e-01	ci right 8.068166e-01	k: 7990	n:10000
KS ci ratio: 2.256539e-02	ci left: 7.425032e-01	ci right 7.595503e-01	k: 7511	n:10000
SRPX2   10000 perm   2 sec   (6557 perm/sec)   p_kst 7.511000e-01   p_cons 7.990000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000167/SRPX2.3_1438_10000_0.7511_0.799_1.png
                gene_name: SRPX2
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 42 percent done.
SS18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.142636e-02	ci left: 5.990540e-01	ci right 6.182826e-01	k: 6087	n:10000
Cons ci ratio: 2.716754e-02	ci left: 6.662236e-01	ci right 6.846741e-01	k: 6755	n:10000
KS ci ratio: 4.549450e-02	ci left: 4.162808e-01	ci right 4.357623e-01	k: 4260	n:10000
SS18   10000 perm   2 sec   (4931 perm/sec)   p_kst 4.260000e-01   p_cons 6.755000e-01   p_joint 6.087000e-01

Outputting figure to mutsig2_images.part000000000167/SS18.3_1301_10000_0.426_0.6755_0.6087.png
                gene_name: SS18
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 44 percent done.
SSTR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.236599e-01	ci left: 2.646035e-02	ci right 3.321723e-02	k: 297	n:10000
Cons ci ratio: 3.301279e-02	ci left: 5.752692e-01	ci right 5.946812e-01	k: 5850	n:10000
KS ci ratio: 3.683071e-01	ci left: 9.139894e-03	ci right 1.335208e-02	k: 111	n:10000
SSTR1   10000 perm   1 sec   (7203 perm/sec)   p_kst 1.110000e-02   p_cons 5.850000e-01   p_joint 2.970000e-02

Joint ci ratio: 1.570719e-01	ci left: 2.782361e-02	ci right 3.261426e-02	k: 603	n:20000
Cons ci ratio: 2.417444e-02	ci left: 5.610503e-01	ci right 5.748299e-01	k: 11359	n:20000
KS ci ratio: 2.391972e-01	ci left: 1.166433e-02	ci right 1.487948e-02	k: 264	n:20000
SSTR1   20000 perm   3 sec   (6476 perm/sec)   p_kst 1.320000e-02   p_cons 5.679500e-01   p_joint 3.015000e-02

Joint ci ratio: 1.564386e-01	ci left: 1.889435e-02	ci right 2.213278e-02	k: 614	n:30000
Cons ci ratio: 1.977296e-02	ci left: 5.614703e-01	ci right 5.727167e-01	k: 17013	n:30000
KS ci ratio: 1.941943e-01	ci left: 1.209779e-02	ci right 1.473103e-02	k: 401	n:30000
SSTR1   30000 perm   5 sec   (6161 perm/sec)   p_kst 1.336667e-02   p_cons 5.671000e-01   p_joint 2.046667e-02

Joint ci ratio: 1.255255e-01	ci left: 2.230417e-02	ci right 2.531551e-02	k: 951	n:40000
Cons ci ratio: 1.720003e-02	ci left: 5.600495e-01	ci right 5.697911e-01	k: 22597	n:40000
KS ci ratio: 1.683371e-01	ci left: 1.224823e-02	ci right 1.452323e-02	k: 534	n:40000
SSTR1   40000 perm   7 sec   (5971 perm/sec)   p_kst 1.335000e-02   p_cons 5.649250e-01   p_joint 2.377500e-02

Joint ci ratio: 1.208170e-01	ci left: 1.937287e-02	ci right 2.188322e-02	k: 1030	n:50000
Cons ci ratio: 1.540134e-02	ci left: 5.600202e-01	ci right 5.687323e-01	k: 28219	n:50000
KS ci ratio: 1.499702e-01	ci left: 1.246827e-02	ci right 1.450879e-02	k: 673	n:50000
SSTR1   50000 perm   9 sec   (5786 perm/sec)   p_kst 1.346000e-02   p_cons 5.643800e-01   p_joint 2.060000e-02

Joint ci ratio: 1.032721e-01	ci left: 2.223766e-02	ci right 2.467540e-02	k: 1406	n:60000
Cons ci ratio: 1.406797e-02	ci left: 5.601042e-01	ci right 5.680563e-01	k: 33845	n:60000
KS ci ratio: 1.358686e-01	ci left: 1.275291e-02	ci right 1.462789e-02	k: 820	n:60000
SSTR1   60000 perm   11 sec   (5638 perm/sec)   p_kst 1.366667e-02   p_cons 5.640833e-01   p_joint 2.343333e-02

Joint ci ratio: 9.875249e-02	ci left: 2.092608e-02	ci right 2.311379e-02	k: 1540	n:70000
Cons ci ratio: 1.303499e-02	ci left: 5.600022e-01	ci right 5.673640e-01	k: 39458	n:70000
KS ci ratio: 1.268573e-01	ci left: 1.260282e-02	ci right 1.432358e-02	k: 941	n:70000
SSTR1   70000 perm   13 sec   (5505 perm/sec)   p_kst 1.344286e-02   p_cons 5.636857e-01   p_joint 2.200000e-02

Joint ci ratio: 9.612927e-02	ci left: 1.938276e-02	ci right 2.135224e-02	k: 1628	n:80000
Cons ci ratio: 1.222318e-02	ci left: 5.590289e-01	ci right 5.659165e-01	k: 44998	n:80000
KS ci ratio: 1.194296e-01	ci left: 1.249336e-02	ci right 1.409223e-02	k: 1062	n:80000
SSTR1   80000 perm   15 sec   (5390 perm/sec)   p_kst 1.327500e-02   p_cons 5.624750e-01   p_joint 2.035000e-02

Joint ci ratio: 9.113095e-02	ci left: 1.922564e-02	ci right 2.107214e-02	k: 1812	n:90000
Cons ci ratio: 1.151914e-02	ci left: 5.594405e-01	ci right 5.659332e-01	k: 50642	n:90000
KS ci ratio: 1.127848e-01	ci left: 1.249693e-02	ci right 1.400135e-02	k: 1191	n:90000
SSTR1   90000 perm   17 sec   (5288 perm/sec)   p_kst 1.323333e-02   p_cons 5.626889e-01   p_joint 2.013333e-02

Joint ci ratio: 8.189183e-02	ci left: 2.148190e-02	ci right 2.332595e-02	k: 2239	n:100000
Cons ci ratio: 1.092378e-02	ci left: 5.597988e-01	ci right 5.659575e-01	k: 56288	n:100000
KS ci ratio: 1.070562e-01	ci left: 1.252124e-02	ci right 1.394720e-02	k: 1322	n:100000
SSTR1   100000 perm   19 sec   (5179 perm/sec)   p_kst 1.322000e-02   p_cons 5.628800e-01   p_joint 2.239000e-02

Joint ci ratio: 7.822710e-02	ci left: 2.144440e-02	ci right 2.319909e-02	k: 2454	n:110000
Cons ci ratio: 1.041193e-02	ci left: 5.601081e-01	ci right 5.659795e-01	k: 61935	n:110000
KS ci ratio: 1.027670e-01	ci left: 1.238322e-02	ci right 1.373354e-02	k: 1435	n:110000
SSTR1   110000 perm   22 sec   (5088 perm/sec)   p_kst 1.304545e-02   p_cons 5.630455e-01   p_joint 2.230909e-02

Joint ci ratio: 7.887743e-02	ci left: 1.937060e-02	ci right 2.096937e-02	k: 2419	n:120000
Cons ci ratio: 9.959467e-03	ci left: 5.606883e-01	ci right 5.663087e-01	k: 67620	n:120000
KS ci ratio: 9.831390e-02	ci left: 1.243177e-02	ci right 1.372525e-02	k: 1568	n:120000
SSTR1   120000 perm   24 sec   (4990 perm/sec)   p_kst 1.306667e-02   p_cons 5.635000e-01   p_joint 2.015833e-02

Outputting figure to mutsig2_images.part000000000167/SSTR1.3_1180_120000_0.013067_0.5635_0.020158.png
                gene_name: SSTR1
               theta_stop: 0.098 
                    nperm: 120000 
                     p_ks: 0.013 
        ci_ks_bounds_left: 0.012 
       ci_ks_bounds_right: 0.014 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.020 
     ci_joint_bounds_left: 0.019 
    ci_joint_bounds_right: 0.021 

Current progress: 46 percent done.
ST6GAL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.611379e-02	ci left: 4.097030e-01	ci right 4.291440e-01	k: 4194	n:10000
Cons ci ratio: 8.165271e-02	ci left: 1.795967e-01	ci right 1.949860e-01	k: 1872	n:10000
KS ci ratio: 4.227754e-02	ci left: 4.523904e-01	ci right 4.720316e-01	k: 4622	n:10000
ST6GAL2   10000 perm   1 sec   (6887 perm/sec)   p_kst 4.622000e-01   p_cons 1.872000e-01   p_joint 4.194000e-01

Outputting figure to mutsig2_images.part000000000167/ST6GAL2.3_1697_10000_0.4622_0.1872_0.4194.png
                gene_name: ST6GAL2
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 48 percent done.
ST6GALNAC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.079455e-02	ci left: 7.721552e-01	ci right 7.884812e-01	k: 7804	n:10000
KS ci ratio: 2.873724e-02	ci left: 6.409613e-01	ci right 6.597510e-01	k: 6504	n:10000
ST6GALNAC1   10000 perm   2 sec   (6603 perm/sec)   p_kst 6.504000e-01   p_cons 7.804000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000167/ST6GALNAC1.3_1839_10000_0.6504_0.7804_1.png
                gene_name: ST6GALNAC1
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
ST6GALNAC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.736201e-01	ci left: 4.427577e-02	ci right 5.278970e-02	k: 484	n:10000
Cons ci ratio: 3.864930e-02	ci left: 4.971503e-01	ci right 5.168456e-01	k: 5070	n:10000
KS ci ratio: 2.583643e-01	ci left: 1.958938e-02	ci right 2.549330e-02	k: 224	n:10000
ST6GALNAC5   10000 perm   1 sec   (6796 perm/sec)   p_kst 2.240000e-02   p_cons 5.070000e-01   p_joint 4.840000e-02

Joint ci ratio: 1.389877e-01	ci left: 3.558584e-02	ci right 4.094947e-02	k: 764	n:20000
Cons ci ratio: 2.744349e-02	ci left: 4.979955e-01	ci right 5.119030e-01	k: 10099	n:20000
KS ci ratio: 1.835317e-01	ci left: 2.025053e-02	ci right 2.438996e-02	k: 445	n:20000
ST6GALNAC5   20000 perm   3 sec   (6094 perm/sec)   p_kst 2.225000e-02   p_cons 5.049500e-01   p_joint 3.820000e-02

Joint ci ratio: 1.130492e-01	ci left: 3.635095e-02	ci right 4.073899e-02	k: 1155	n:30000
Cons ci ratio: 2.294547e-02	ci left: 4.874268e-01	ci right 4.987745e-01	k: 14793	n:30000
KS ci ratio: 1.514834e-01	ci left: 2.017731e-02	ci right 2.351618e-02	k: 654	n:30000
ST6GALNAC5   30000 perm   5 sec   (5807 perm/sec)   p_kst 2.180000e-02   p_cons 4.931000e-01   p_joint 3.850000e-02

Joint ci ratio: 1.102240e-01	ci left: 2.895814e-02	ci right 3.236045e-02	k: 1225	n:40000
Cons ci ratio: 1.977546e-02	ci left: 4.906133e-01	ci right 5.004374e-01	k: 19821	n:40000
KS ci ratio: 1.283143e-01	ci left: 2.133523e-02	ci right 2.428461e-02	k: 911	n:40000
ST6GALNAC5   40000 perm   7 sec   (5615 perm/sec)   p_kst 2.277500e-02   p_cons 4.955250e-01   p_joint 3.062500e-02

Joint ci ratio: 9.873720e-02	ci left: 2.904909e-02	ci right 3.208573e-02	k: 1527	n:50000
Cons ci ratio: 1.765974e-02	ci left: 4.919278e-01	ci right 5.007126e-01	k: 24816	n:50000
KS ci ratio: 1.149229e-01	ci left: 2.143166e-02	ci right 2.406415e-02	k: 1136	n:50000
ST6GALNAC5   50000 perm   9 sec   (5468 perm/sec)   p_kst 2.272000e-02   p_cons 4.963200e-01   p_joint 3.054000e-02

Joint ci ratio: 9.493042e-02	ci left: 2.632000e-02	ci right 2.895929e-02	k: 1657	n:60000
Cons ci ratio: 1.611481e-02	ci left: 4.925079e-01	ci right 5.005258e-01	k: 29791	n:60000
KS ci ratio: 1.050835e-01	ci left: 2.147429e-02	ci right 2.387219e-02	k: 1359	n:60000
ST6GALNAC5   60000 perm   11 sec   (5354 perm/sec)   p_kst 2.265000e-02   p_cons 4.965167e-01   p_joint 2.761667e-02

Joint ci ratio: 8.957761e-02	ci left: 2.543446e-02	ci right 2.783357e-02	k: 1863	n:70000
Cons ci ratio: 1.489994e-02	ci left: 4.934605e-01	ci right 5.008825e-01	k: 34802	n:70000
KS ci ratio: 9.690386e-02	ci left: 2.173481e-02	ci right 2.396213e-02	k: 1598	n:70000
ST6GALNAC5   70000 perm   13 sec   (5250 perm/sec)   p_kst 2.282857e-02   p_cons 4.971714e-01   p_joint 2.661429e-02

Outputting figure to mutsig2_images.part000000000167/ST6GALNAC5.3_1031_70000_0.022829_0.49717_0.026614.png
                gene_name: ST6GALNAC5
               theta_stop: 0.097 
                    nperm: 70000 
                     p_ks: 0.023 
        ci_ks_bounds_left: 0.022 
       ci_ks_bounds_right: 0.024 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.027 
     ci_joint_bounds_left: 0.025 
    ci_joint_bounds_right: 0.028 

Current progress: 52 percent done.
ST8SIA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.164444e-02	ci left: 5.957408e-01	ci right 6.149978e-01	k: 6054	n:10000
Cons ci ratio: 5.529198e-02	ci left: 3.251526e-01	ci right 3.437439e-01	k: 3344	n:10000
KS ci ratio: 1.413391e-02	ci left: 8.785849e-01	ci right 8.911899e-01	k: 8850	n:10000
ST8SIA1   10000 perm   2 sec   (6488 perm/sec)   p_kst 8.850000e-01   p_cons 3.344000e-01   p_joint 6.054000e-01

Outputting figure to mutsig2_images.part000000000167/ST8SIA1.3_1091_10000_0.885_0.3344_0.6054.png
                gene_name: ST8SIA1
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.61 

Current progress: 54 percent done.
ST8SIA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.194986e-02	ci left: 7.528195e-01	ci right 7.696281e-01	k: 7613	n:10000
Cons ci ratio: 5.622383e-02	ci left: 3.178069e-01	ci right 3.362939e-01	k: 3270	n:10000
KS ci ratio: 2.468101e-02	ci left: 7.071507e-01	ci right 7.249233e-01	k: 7161	n:10000
ST8SIA4   10000 perm   2 sec   (6623 perm/sec)   p_kst 7.161000e-01   p_cons 3.270000e-01   p_joint 7.613000e-01

Outputting figure to mutsig2_images.part000000000167/ST8SIA4.3_1104_10000_0.7161_0.327_0.7613.png
                gene_name: ST8SIA4
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 56 percent done.
STAC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.331165e-02	ci left: 1.429561e-01	ci right 1.570484e-01	k: 1499	n:10000
Cons ci ratio: 1.389664e-01	ci left: 6.855690e-02	ci right 7.889307e-02	k: 736	n:10000
KS ci ratio: 4.339994e-02	ci left: 4.394169e-01	ci right 4.590127e-01	k: 4492	n:10000
STAC2   10000 perm   1 sec   (6734 perm/sec)   p_kst 4.492000e-01   p_cons 7.360000e-02   p_joint 1.499000e-01

Joint ci ratio: 4.499479e-02	ci left: 2.688694e-01	ci right 2.812960e-01	k: 5501	n:20000
Cons ci ratio: 9.500031e-02	ci left: 7.471117e-02	ci right 8.221193e-02	k: 1568	n:20000
KS ci ratio: 3.076242e-02	ci left: 4.411410e-01	ci right 4.549742e-01	k: 8961	n:20000
STAC2   20000 perm   3 sec   (6103 perm/sec)   p_kst 4.480500e-01   p_cons 7.840000e-02   p_joint 2.750500e-01

Outputting figure to mutsig2_images.part000000000167/STAC2.3_1280_20000_0.44805_0.0784_0.27505.png
                gene_name: STAC2
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.078 
      ci_cons_bounds_left: 0.075 
     ci_cons_bounds_right: 0.082 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 58 percent done.
STAM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.891266e-02	ci left: 3.814188e-01	ci right 4.006447e-01	k: 3910	n:10000
Cons ci ratio: 7.144074e-02	ci left: 2.230647e-01	ci right 2.396920e-01	k: 2313	n:10000
KS ci ratio: 5.390563e-02	ci left: 3.364739e-01	ci right 3.552160e-01	k: 3458	n:10000
STAM   10000 perm   2 sec   (6628 perm/sec)   p_kst 3.458000e-01   p_cons 2.313000e-01   p_joint 3.910000e-01

Outputting figure to mutsig2_images.part000000000167/STAM.3_1679_10000_0.3458_0.2313_0.391.png
                gene_name: STAM
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 60 percent done.
STAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.127917e-02	ci left: 1.809743e-01	ci right 1.964075e-01	k: 1886	n:10000
Cons ci ratio: 5.028518e-02	ci left: 3.683836e-01	ci right 3.874876e-01	k: 3779	n:10000
KS ci ratio: 9.397593e-02	ci left: 1.411914e-01	ci right 1.552142e-01	k: 1481	n:10000
STAP2   10000 perm   2 sec   (6578 perm/sec)   p_kst 1.481000e-01   p_cons 3.779000e-01   p_joint 1.886000e-01

Outputting figure to mutsig2_images.part000000000167/STAP2.3_1402_10000_0.1481_0.3779_0.1886.png
                gene_name: STAP2
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 62 percent done.
SRPX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.355019e-02	ci left: 3.394541e-01	ci right 3.582340e-01	k: 3488	n:10000
KS ci ratio: 2.385131e-02	ci left: 7.209804e-01	ci right 7.384856e-01	k: 7298	n:10000
SRPX   10000 perm   1 sec   (6736 perm/sec)   p_kst 7.298000e-01   p_cons 3.488000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000167/SRPX.2_1435_10000_0.7298_0.3488_1.png
                gene_name: SRPX
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
SSPN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.776168e-02	ci left: 3.927683e-01	ci right 4.120886e-01	k: 4024	n:10000
KS ci ratio: 6.387201e-02	ci left: 2.647803e-01	ci right 2.823518e-01	k: 2735	n:10000
SSPN   10000 perm   1 sec   (6908 perm/sec)   p_kst 2.735000e-01   p_cons 4.024000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000167/SSPN.2_744_10000_0.2735_0.4024_1.png
                gene_name: SSPN
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
SSRP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.081572e-01	ci left: 1.097862e-01	ci right 1.224384e-01	k: 1160	n:10000
Cons ci ratio: 1.561224e-01	ci left: 5.465342e-02	ci right 6.400534e-02	k: 592	n:10000
KS ci ratio: 2.347668e-02	ci left: 7.272426e-01	ci right 7.446198e-01	k: 7360	n:10000
SSRP1   10000 perm   2 sec   (6482 perm/sec)   p_kst 7.360000e-01   p_cons 5.920000e-02   p_joint 1.160000e-01

Joint ci ratio: 7.268865e-02	ci left: 1.223163e-01	ci right 1.315924e-01	k: 2538	n:20000
Cons ci ratio: 1.083252e-01	ci left: 5.811191e-02	ci right 6.481629e-02	k: 1228	n:20000
KS ci ratio: 1.650894e-02	ci left: 7.319977e-01	ci right 7.442330e-01	k: 14763	n:20000
SSRP1   20000 perm   3 sec   (5921 perm/sec)   p_kst 7.381500e-01   p_cons 6.140000e-02   p_joint 1.269000e-01

Joint ci ratio: 6.257833e-02	ci left: 1.120354e-01	ci right 1.193059e-01	k: 3469	n:30000
Cons ci ratio: 8.735481e-02	ci left: 6.014581e-02	ci right 6.567254e-02	k: 1886	n:30000
KS ci ratio: 1.348595e-02	ci left: 7.329511e-01	ci right 7.429361e-01	k: 22139	n:30000
SSRP1   30000 perm   5 sec   (5609 perm/sec)   p_kst 7.379667e-01   p_cons 6.286667e-02   p_joint 1.156333e-01

Outputting figure to mutsig2_images.part000000000167/SSRP1.2_2194_30000_0.73797_0.062867_0.11563.png
                gene_name: SSRP1
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.063 
      ci_cons_bounds_left: 0.060 
     ci_cons_bounds_right: 0.066 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 69 percent done.
SSTR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.895677e-02	ci left: 1.553186e-01	ci right 1.698785e-01	k: 1625	n:10000
Cons ci ratio: 1.316462e-02	ci left: 8.926197e-01	ci right 9.045470e-01	k: 8987	n:10000
KS ci ratio: 8.895677e-02	ci left: 1.553186e-01	ci right 1.698785e-01	k: 1625	n:10000
SSTR2   10000 perm   2 sec   (5593 perm/sec)   p_kst 1.625000e-01   p_cons 8.987000e-01   p_joint 1.625000e-01

Outputting figure to mutsig2_images.part000000000167/SSTR2.2_1114_10000_0.1625_0.8987_0.1625.png
                gene_name: SSTR2
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 71 percent done.
SSTR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.313783e-02	ci left: 4.424102e-01	ci right 4.620177e-01	k: 4522	n:10000
Cons ci ratio: 6.007874e-02	ci left: 2.895409e-01	ci right 3.075765e-01	k: 2985	n:10000
KS ci ratio: 5.290821e-02	ci left: 3.449190e-01	ci right 3.637659e-01	k: 3543	n:10000
SSTR3   10000 perm   1 sec   (7241 perm/sec)   p_kst 3.543000e-01   p_cons 2.985000e-01   p_joint 4.522000e-01

Outputting figure to mutsig2_images.part000000000167/SSTR3.2_1261_10000_0.3543_0.2985_0.4522.png
                gene_name: SSTR3
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 73 percent done.
SSTR4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.943566e-02	ci left: 6.298992e-01	ci right 6.488195e-01	k: 6394	n:10000
Cons ci ratio: 3.038716e-02	ci left: 6.150242e-01	ci right 6.341032e-01	k: 6246	n:10000
KS ci ratio: 2.169949e-01	ci left: 2.816365e-02	ci right 3.511272e-02	k: 315	n:10000
SSTR4   10000 perm   1 sec   (6715 perm/sec)   p_kst 3.150000e-02   p_cons 6.246000e-01   p_joint 6.394000e-01

Joint ci ratio: 4.184691e-02	ci left: 2.985235e-01	ci right 3.113332e-01	k: 6098	n:20000
Cons ci ratio: 2.147427e-02	ci left: 6.181474e-01	ci right 6.316163e-01	k: 12498	n:20000
KS ci ratio: 1.501612e-01	ci left: 3.047099e-02	ci right 3.546599e-02	k: 658	n:20000
SSTR4   20000 perm   3 sec   (6169 perm/sec)   p_kst 3.290000e-02   p_cons 6.249000e-01   p_joint 3.049000e-01

Joint ci ratio: 5.442357e-02	ci left: 1.434061e-01	ci right 1.514623e-01	k: 4422	n:30000
Cons ci ratio: 1.755016e-02	ci left: 6.189583e-01	ci right 6.299509e-01	k: 18734	n:30000
KS ci ratio: 1.225110e-01	ci left: 3.097489e-02	ci right 3.504953e-02	k: 989	n:30000
SSTR4   30000 perm   5 sec   (5862 perm/sec)   p_kst 3.296667e-02   p_cons 6.244667e-01   p_joint 1.474000e-01

Joint ci ratio: 4.453666e-02	ci left: 1.586243e-01	ci right 1.658748e-01	k: 6489	n:40000
Cons ci ratio: 1.518659e-02	ci left: 6.200839e-01	ci right 6.295980e-01	k: 24994	n:40000
KS ci ratio: 1.063064e-01	ci left: 3.112472e-02	ci right 3.464352e-02	k: 1314	n:40000
SSTR4   40000 perm   7 sec   (5716 perm/sec)   p_kst 3.285000e-02   p_cons 6.248500e-01   p_joint 1.622250e-01

Joint ci ratio: 3.337117e-02	ci left: 2.126580e-01	ci right 2.198950e-01	k: 10813	n:50000
Cons ci ratio: 1.360568e-02	ci left: 6.198174e-01	ci right 6.283282e-01	k: 31204	n:50000
KS ci ratio: 9.480808e-02	ci left: 3.149045e-02	ci right 3.464406e-02	k: 1652	n:50000
SSTR4   50000 perm   9 sec   (5565 perm/sec)   p_kst 3.304000e-02   p_cons 6.240800e-01   p_joint 2.162600e-01

Outputting figure to mutsig2_images.part000000000167/SSTR4.2_1171_50000_0.03304_0.62408_0.21626.png
                gene_name: SSTR4
               theta_stop: 0.095 
                    nperm: 50000 
                     p_ks: 0.033 
        ci_ks_bounds_left: 0.031 
       ci_ks_bounds_right: 0.035 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 75 percent done.
SSX2IP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.582440e-02	ci left: 1.651411e-01	ci right 1.800501e-01	k: 1725	n:10000
Cons ci ratio: 3.702067e-02	ci left: 5.186590e-01	ci right 5.383244e-01	k: 5285	n:10000
KS ci ratio: 1.027259e-01	ci left: 1.205332e-01	ci right 1.336849e-01	k: 1270	n:10000
SSX2IP   10000 perm   1 sec   (6934 perm/sec)   p_kst 1.270000e-01   p_cons 5.285000e-01   p_joint 1.725000e-01

Joint ci ratio: 5.390757e-02	ci left: 2.034321e-01	ci right 2.147526e-01	k: 4181	n:20000
Cons ci ratio: 2.631098e-02	ci left: 5.190515e-01	ci right 5.329409e-01	k: 10520	n:20000
KS ci ratio: 7.387652e-02	ci left: 1.188226e-01	ci right 1.279872e-01	k: 2467	n:20000
SSX2IP   20000 perm   3 sec   (6133 perm/sec)   p_kst 1.233500e-01   p_cons 5.260000e-01   p_joint 2.090500e-01

Outputting figure to mutsig2_images.part000000000167/SSX2IP.2_1897_20000_0.12335_0.526_0.20905.png
                gene_name: SSX2IP
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 77 percent done.
SSX5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.424714e-03	ci left: 9.784504e-01	ci right 9.838641e-01	k: 9813	n:10000
Cons ci ratio: 1.906652e-02	ci left: 8.008515e-01	ci right 8.163683e-01	k: 8087	n:10000
KS ci ratio: 2.532304e-01	ci left: 2.043278e-02	ci right 2.644926e-02	k: 233	n:10000
SSX5   10000 perm   1 sec   (7397 perm/sec)   p_kst 2.330000e-02   p_cons 8.087000e-01   p_joint 9.813000e-01

Joint ci ratio: 3.661043e-03	ci left: 9.810064e-01	ci right 9.846513e-01	k: 19658	n:20000
Cons ci ratio: 1.342289e-02	ci left: 8.045437e-01	ci right 8.154660e-01	k: 16201	n:20000
KS ci ratio: 1.865486e-01	ci left: 1.958233e-02	ci right 2.365841e-02	k: 431	n:20000
SSX5   20000 perm   3 sec   (6607 perm/sec)   p_kst 2.155000e-02   p_cons 8.100500e-01   p_joint 9.829000e-01

Joint ci ratio: 2.984918e-03	ci left: 9.814034e-01	ci right 9.843687e-01	k: 29488	n:30000
Cons ci ratio: 1.094718e-02	ci left: 8.059177e-01	ci right 8.148221e-01	k: 24312	n:30000
KS ci ratio: 1.581536e-01	ci left: 1.847776e-02	ci right 2.168280e-02	k: 601	n:30000
SSX5   30000 perm   5 sec   (6338 perm/sec)   p_kst 2.003333e-02   p_cons 8.104000e-01   p_joint 9.829333e-01

Joint ci ratio: 2.558021e-03	ci left: 9.819701e-01	ci right 9.845090e-01	k: 39331	n:40000
Cons ci ratio: 9.519809e-03	ci left: 8.052389e-01	ci right 8.129662e-01	k: 32365	n:40000
KS ci ratio: 1.378149e-01	ci left: 1.845721e-02	ci right 2.121312e-02	k: 792	n:40000
SSX5   40000 perm   7 sec   (6153 perm/sec)   p_kst 1.980000e-02   p_cons 8.091250e-01   p_joint 9.832750e-01

Joint ci ratio: 2.271964e-03	ci left: 9.823449e-01	ci right 9.845984e-01	k: 49175	n:50000
Cons ci ratio: 8.506622e-03	ci left: 8.059495e-01	ci right 8.128546e-01	k: 40471	n:50000
KS ci ratio: 1.239854e-01	ci left: 1.838351e-02	ci right 2.083271e-02	k: 979	n:50000
SSX5   50000 perm   8 sec   (5932 perm/sec)   p_kst 1.958000e-02   p_cons 8.094200e-01   p_joint 9.835000e-01

Joint ci ratio: 2.062081e-03	ci left: 9.826376e-01	ci right 9.846819e-01	k: 59021	n:60000
Cons ci ratio: 7.771391e-03	ci left: 8.060159e-01	ci right 8.123208e-01	k: 48551	n:60000
KS ci ratio: 1.124054e-01	ci left: 1.874885e-02	ci right 2.099793e-02	k: 1191	n:60000
SSX5   60000 perm   10 sec   (5818 perm/sec)   p_kst 1.985000e-02   p_cons 8.091833e-01   p_joint 9.836833e-01

Joint ci ratio: 1.903745e-03	ci left: 9.828079e-01	ci right 9.846945e-01	k: 68864	n:70000
Cons ci ratio: 7.201169e-03	ci left: 8.059819e-01	ci right 8.118211e-01	k: 56624	n:70000
KS ci ratio: 1.046316e-01	ci left: 1.862766e-02	ci right 2.069814e-02	k: 1375	n:70000
SSX5   70000 perm   12 sec   (5675 perm/sec)   p_kst 1.964286e-02   p_cons 8.089143e-01   p_joint 9.837714e-01

Joint ci ratio: 1.769320e-03	ci left: 9.830808e-01	ci right 9.848338e-01	k: 78718	n:80000
Cons ci ratio: 6.745368e-03	ci left: 8.057434e-01	ci right 8.112092e-01	k: 64679	n:80000
KS ci ratio: 9.837194e-02	ci left: 1.850424e-02	ci right 2.043083e-02	k: 1556	n:80000
SSX5   80000 perm   14 sec   (5536 perm/sec)   p_kst 1.945000e-02   p_cons 8.084875e-01   p_joint 9.839750e-01

Outputting figure to mutsig2_images.part000000000167/SSX5.2_718_80000_0.01945_0.80849_0.98398.png
                gene_name: SSX5
               theta_stop: 0.098 
                    nperm: 80000 
                     p_ks: 0.019 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.020 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 79 percent done.
SSX7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.305411e-02	ci left: 7.343154e-01	ci right 7.515429e-01	k: 7430	n:10000
Cons ci ratio: 5.293134e-02	ci left: 3.447203e-01	ci right 3.635648e-01	k: 3541	n:10000
KS ci ratio: 3.863384e-02	ci left: 4.973503e-01	ci right 5.170455e-01	k: 5072	n:10000
SSX7   10000 perm   1 sec   (7225 perm/sec)   p_kst 5.072000e-01   p_cons 3.541000e-01   p_joint 7.430000e-01

Outputting figure to mutsig2_images.part000000000167/SSX7.2_591_10000_0.5072_0.3541_0.743.png
                gene_name: SSX7
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 81 percent done.
ST14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.321513e-02	ci left: 8.919018e-01	ci right 9.038653e-01	k: 8980	n:10000
KS ci ratio: 3.978354e-03	ci left: 9.877409e-01	ci right 9.917661e-01	k: 9899	n:10000
ST14   10000 perm   2 sec   (6596 perm/sec)   p_kst 9.899000e-01   p_cons 8.980000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000167/ST14.2_2644_10000_0.9899_0.898_1.png
                gene_name: ST14
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
ST3GAL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.149895e-02	ci left: 5.979496e-01	ci right 6.171877e-01	k: 6076	n:10000
KS ci ratio: 2.734118e-02	ci left: 6.634040e-01	ci right 6.818953e-01	k: 6727	n:10000
ST3GAL4   10000 perm   1 sec   (7306 perm/sec)   p_kst 6.727000e-01   p_cons 6.076000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000167/ST3GAL4.2_1030_10000_0.6727_0.6076_1.png
                gene_name: ST3GAL4
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 85 percent done.
ST3GAL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.619696e-02	ci left: 5.298707e-01	ci right 5.495061e-01	k: 5397	n:10000
Cons ci ratio: 1.797425e-02	ci left: 8.187299e-01	ci right 8.336795e-01	k: 8263	n:10000
KS ci ratio: 9.062615e-02	ci left: 1.504109e-01	ci right 1.647892e-01	k: 1575	n:10000
ST3GAL5   10000 perm   1 sec   (7095 perm/sec)   p_kst 1.575000e-01   p_cons 8.263000e-01   p_joint 5.397000e-01

Outputting figure to mutsig2_images.part000000000167/ST3GAL5.2_1302_10000_0.1575_0.8263_0.5397.png
                gene_name: ST3GAL5
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 88 percent done.
ST3GAL6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.501991e-02	ci left: 3.273369e-01	ci right 3.459583e-01	k: 3366	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
ST3GAL6   10000 perm   1 sec   (7327 perm/sec)   p_kst 1   p_cons 3.366000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000167/ST3GAL6.2_1032_10000_1_0.3366_1.png
                gene_name: ST3GAL6
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
ST6GAL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.807057e-02	ci left: 6.516263e-01	ci right 6.702799e-01	k: 6610	n:10000
KS ci ratio: 7.180414e-02	ci left: 2.212878e-01	ci right 2.378700e-01	k: 2295	n:10000
ST6GAL1   10000 perm   1 sec   (6788 perm/sec)   p_kst 2.295000e-01   p_cons 6.610000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000167/ST6GAL1.2_1241_10000_0.2295_0.661_1.png
                gene_name: ST6GAL1
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
ST8SIA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.795168e-02	ci left: 6.535385e-01	ci right 6.721666e-01	k: 6629	n:10000
Cons ci ratio: 3.145934e-02	ci left: 5.985520e-01	ci right 6.177849e-01	k: 6082	n:10000
KS ci ratio: 5.796730e-02	ci left: 3.046112e-01	ci right 3.228974e-01	k: 3137	n:10000
ST8SIA2   10000 perm   1 sec   (7077 perm/sec)   p_kst 3.137000e-01   p_cons 6.082000e-01   p_joint 6.629000e-01

Outputting figure to mutsig2_images.part000000000167/ST8SIA2.2_1152_10000_0.3137_0.6082_0.6629.png
                gene_name: ST8SIA2
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 94 percent done.
ST8SIA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.198465e-02	ci left: 3.529698e-01	ci right 3.719104e-01	k: 3624	n:10000
Cons ci ratio: 6.694906e-02	ci left: 2.466773e-01	ci right 2.638654e-01	k: 2552	n:10000
KS ci ratio: 6.626932e-02	ci left: 2.505337e-01	ci right 2.678068e-01	k: 2591	n:10000
ST8SIA3   10000 perm   1 sec   (6899 perm/sec)   p_kst 2.591000e-01   p_cons 2.552000e-01   p_joint 3.624000e-01

Outputting figure to mutsig2_images.part000000000167/ST8SIA3.2_1159_10000_0.2591_0.2552_0.3624.png
                gene_name: ST8SIA3
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 96 percent done.
STAM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.481028e+00	ci left: 2.202202e-04	ci right 1.305486e-03	k: 6	n:10000
Cons ci ratio: 1.906652e-02	ci left: 8.008515e-01	ci right 8.163683e-01	k: 8087	n:10000
KS ci ratio: 1.481028e+00	ci left: 2.202202e-04	ci right 1.305486e-03	k: 6	n:10000
STAM2   10000 perm   2 sec   (6608 perm/sec)   p_kst 6.000000e-04   p_cons 8.087000e-01   p_joint 6.000000e-04

Joint ci ratio: 9.235139e-01	ci left: 4.952318e-04	ci right 1.360585e-03	k: 17	n:20000
Cons ci ratio: 1.357966e-02	ci left: 8.009052e-01	ci right 8.119056e-01	k: 16129	n:20000
KS ci ratio: 9.235139e-01	ci left: 4.952318e-04	ci right 1.360585e-03	k: 17	n:20000
STAM2   20000 perm   3 sec   (5964 perm/sec)   p_kst 8.500000e-04   p_cons 8.064500e-01   p_joint 8.500000e-04

Joint ci ratio: 8.551005e-01	ci left: 4.072634e-04	ci right 1.029426e-03	k: 20	n:30000
Cons ci ratio: 1.100058e-02	ci left: 8.044045e-01	ci right 8.133356e-01	k: 24267	n:30000
KS ci ratio: 8.551005e-01	ci left: 4.072634e-04	ci right 1.029426e-03	k: 20	n:30000
STAM2   30000 perm   5 sec   (5717 perm/sec)   p_kst 6.666667e-04   p_cons 8.089000e-01   p_joint 6.666667e-04

Joint ci ratio: 7.541403e-01	ci left: 4.246441e-04	ci right 9.522566e-04	k: 26	n:40000
Cons ci ratio: 9.542145e-03	ci left: 8.045084e-01	ci right 8.122468e-01	k: 32336	n:40000
KS ci ratio: 7.541403e-01	ci left: 4.246441e-04	ci right 9.522566e-04	k: 26	n:40000
STAM2   40000 perm   7 sec   (5529 perm/sec)   p_kst 6.500000e-04   p_cons 8.084000e-01   p_joint 6.500000e-04

Joint ci ratio: 7.154689e-01	ci left: 3.884684e-04	ci right 8.328714e-04	k: 29	n:50000
Cons ci ratio: 8.890178e-03	ci left: 7.918772e-01	ci right 7.989685e-01	k: 39772	n:50000
KS ci ratio: 7.154689e-01	ci left: 3.884684e-04	ci right 8.328714e-04	k: 29	n:50000
STAM2   50000 perm   9 sec   (5383 perm/sec)   p_kst 5.800000e-04   p_cons 7.954400e-01   p_joint 5.800000e-04

Joint ci ratio: 6.720784e-01	ci left: 3.786240e-04	ci right 7.723186e-04	k: 33	n:60000
Cons ci ratio: 8.123223e-03	ci left: 7.918813e-01	ci right 7.983568e-01	k: 47708	n:60000
KS ci ratio: 6.720784e-01	ci left: 3.786240e-04	ci right 7.723186e-04	k: 33	n:60000
STAM2   60000 perm   11 sec   (5249 perm/sec)   p_kst 5.500000e-04   p_cons 7.951333e-01   p_joint 5.500000e-04

Joint ci ratio: 6.046833e-01	ci left: 4.203504e-04	ci right 7.945046e-04	k: 41	n:70000
Cons ci ratio: 7.527012e-03	ci left: 7.918464e-01	ci right 7.978434e-01	k: 55640	n:70000
KS ci ratio: 6.046833e-01	ci left: 4.203504e-04	ci right 7.945046e-04	k: 41	n:70000
STAM2   70000 perm   14 sec   (5149 perm/sec)   p_kst 5.857143e-04   p_cons 7.948571e-01   p_joint 5.857143e-04

Joint ci ratio: 5.598250e-01	ci left: 4.424247e-04	ci right 7.954352e-04	k: 48	n:80000
Cons ci ratio: 7.045613e-03	ci left: 7.918213e-01	ci right 7.974323e-01	k: 63571	n:80000
KS ci ratio: 5.598250e-01	ci left: 4.424247e-04	ci right 7.954352e-04	k: 48	n:80000
STAM2   80000 perm   16 sec   (5038 perm/sec)   p_kst 6.000000e-04   p_cons 7.946375e-01   p_joint 6.000000e-04

Joint ci ratio: 5.434461e-01	ci left: 4.219488e-04	ci right 7.449956e-04	k: 51	n:90000
Cons ci ratio: 6.631894e-03	ci left: 7.925149e-01	ci right 7.977994e-01	k: 71565	n:90000
KS ci ratio: 5.434461e-01	ci left: 4.219488e-04	ci right 7.449956e-04	k: 51	n:90000
STAM2   90000 perm   18 sec   (4946 perm/sec)   p_kst 5.666667e-04   p_cons 7.951667e-01   p_joint 5.666667e-04

Joint ci ratio: 5.236827e-01	ci left: 4.143613e-04	ci right 7.158412e-04	k: 55	n:100000
Cons ci ratio: 6.290728e-03	ci left: 7.926953e-01	ci right 7.977076e-01	k: 79521	n:100000
KS ci ratio: 5.236827e-01	ci left: 4.143613e-04	ci right 7.158412e-04	k: 55	n:100000
STAM2   100000 perm   21 sec   (4851 perm/sec)   p_kst 5.500000e-04   p_cons 7.952100e-01   p_joint 5.500000e-04

Joint ci ratio: 4.976979e-01	ci left: 4.242091e-04	ci right 7.122806e-04	k: 61	n:110000
Cons ci ratio: 6.008701e-03	ci left: 7.922277e-01	ci right 7.970113e-01	k: 87409	n:110000
KS ci ratio: 4.976979e-01	ci left: 4.242091e-04	ci right 7.122806e-04	k: 61	n:110000
STAM2   110000 perm   23 sec   (4762 perm/sec)   p_kst 5.545455e-04   p_cons 7.946273e-01   p_joint 5.545455e-04

Joint ci ratio: 4.977098e-01	ci left: 3.888563e-04	ci right 6.529282e-04	k: 61	n:120000
Cons ci ratio: 5.750141e-03	ci left: 7.924870e-01	ci right 7.970654e-01	k: 95374	n:120000
KS ci ratio: 4.977098e-01	ci left: 3.888563e-04	ci right 6.529282e-04	k: 61	n:120000
STAM2   120000 perm   26 sec   (4675 perm/sec)   p_kst 5.083333e-04   p_cons 7.947833e-01   p_joint 5.083333e-04

Joint ci ratio: 4.717855e-01	ci left: 4.062119e-04	ci right 6.630782e-04	k: 68	n:130000
Cons ci ratio: 5.516195e-03	ci left: 7.930731e-01	ci right 7.974676e-01	k: 103386	n:130000
KS ci ratio: 4.717855e-01	ci left: 4.062119e-04	ci right 6.630782e-04	k: 68	n:130000
STAM2   130000 perm   28 sec   (4591 perm/sec)   p_kst 5.230769e-04   p_cons 7.952769e-01   p_joint 5.230769e-04

Joint ci ratio: 4.684108e-01	ci left: 3.834919e-04	ci right 6.237014e-04	k: 69	n:140000
Cons ci ratio: 5.316094e-03	ci left: 7.931194e-01	ci right 7.973540e-01	k: 111334	n:140000
KS ci ratio: 4.684108e-01	ci left: 3.834919e-04	ci right 6.237014e-04	k: 69	n:140000
STAM2   140000 perm   31 sec   (4516 perm/sec)   p_kst 4.928571e-04   p_cons 7.952429e-01   p_joint 4.928571e-04

Joint ci ratio: 4.466093e-01	ci left: 3.992158e-04	ci right 6.341285e-04	k: 76	n:150000
Cons ci ratio: 5.143868e-03	ci left: 7.926804e-01	ci right 7.967749e-01	k: 119210	n:150000
KS ci ratio: 4.466093e-01	ci left: 3.992158e-04	ci right 6.341285e-04	k: 76	n:150000
STAM2   150000 perm   34 sec   (4441 perm/sec)   p_kst 5.066667e-04   p_cons 7.947333e-01   p_joint 5.066667e-04

Joint ci ratio: 4.354439e-01	ci left: 3.964882e-04	ci right 6.222552e-04	k: 80	n:160000
Cons ci ratio: 4.985330e-03	ci left: 7.924301e-01	ci right 7.963967e-01	k: 127107	n:160000
KS ci ratio: 4.354439e-01	ci left: 3.964882e-04	ci right 6.222552e-04	k: 80	n:160000
STAM2   160000 perm   37 sec   (4371 perm/sec)   p_kst 5.000000e-04   p_cons 7.944187e-01   p_joint 5.000000e-04

Joint ci ratio: 4.201593e-01	ci left: 4.046599e-04	ci right 6.247235e-04	k: 86	n:170000
Cons ci ratio: 4.838151e-03	ci left: 7.923765e-01	ci right 7.962252e-01	k: 135032	n:170000
KS ci ratio: 4.201593e-01	ci left: 4.046599e-04	ci right 6.247235e-04	k: 86	n:170000
STAM2   170000 perm   39 sec   (4308 perm/sec)   p_kst 5.058824e-04   p_cons 7.943059e-01   p_joint 5.058824e-04

Joint ci ratio: 4.042104e-01	ci left: 4.170363e-04	ci right 6.329148e-04	k: 93	n:180000
Cons ci ratio: 4.696725e-03	ci left: 7.927875e-01	ci right 7.965252e-01	k: 143039	n:180000
KS ci ratio: 4.042104e-01	ci left: 4.170363e-04	ci right 6.329148e-04	k: 93	n:180000
STAM2   180000 perm   43 sec   (4234 perm/sec)   p_kst 5.166667e-04   p_cons 7.946611e-01   p_joint 5.166667e-04

Joint ci ratio: 3.958766e-01	ci left: 4.140213e-04	ci right 6.227638e-04	k: 97	n:190000
Cons ci ratio: 4.565382e-03	ci left: 7.932727e-01	ci right 7.969078e-01	k: 151068	n:190000
KS ci ratio: 3.958766e-01	ci left: 4.140213e-04	ci right 6.227638e-04	k: 97	n:190000
STAM2   190000 perm   46 sec   (4169 perm/sec)   p_kst 5.105263e-04   p_cons 7.950947e-01   p_joint 5.105263e-04

Joint ci ratio: 3.824514e-01	ci left: 4.248968e-04	ci right 6.300324e-04	k: 104	n:200000
Cons ci ratio: 4.447663e-03	ci left: 7.934748e-01	ci right 7.970167e-01	k: 159050	n:200000
KS ci ratio: 3.824514e-01	ci left: 4.248968e-04	ci right 6.300324e-04	k: 104	n:200000
STAM2   200000 perm   49 sec   (4108 perm/sec)   p_kst 5.200000e-04   p_cons 7.952500e-01   p_joint 5.200000e-04

Joint ci ratio: 3.736585e-01	ci left: 4.262109e-04	ci right 6.260924e-04	k: 109	n:210000
Cons ci ratio: 4.337396e-03	ci left: 7.937494e-01	ci right 7.972044e-01	k: 167051	n:210000
KS ci ratio: 3.736585e-01	ci left: 4.262109e-04	ci right 6.260924e-04	k: 109	n:210000
STAM2   210000 perm   52 sec   (4052 perm/sec)   p_kst 5.190476e-04   p_cons 7.954810e-01   p_joint 5.190476e-04

Joint ci ratio: 3.654455e-01	ci left: 4.274545e-04	ci right 6.224622e-04	k: 114	n:220000
Cons ci ratio: 4.240443e-03	ci left: 7.935759e-01	ci right 7.969527e-01	k: 174959	n:220000
KS ci ratio: 3.654455e-01	ci left: 4.274545e-04	ci right 6.224622e-04	k: 114	n:220000
STAM2   220000 perm   55 sec   (3993 perm/sec)   p_kst 5.181818e-04   p_cons 7.952682e-01   p_joint 5.181818e-04

Joint ci ratio: 3.607719e-01	ci left: 4.207228e-04	ci right 6.096276e-04	k: 117	n:230000
Cons ci ratio: 4.147051e-03	ci left: 7.936277e-01	ci right 7.969301e-01	k: 182915	n:230000
KS ci ratio: 3.607719e-01	ci left: 4.207228e-04	ci right 6.096276e-04	k: 117	n:230000
STAM2   230000 perm   58 sec   (3939 perm/sec)   p_kst 5.086957e-04   p_cons 7.952826e-01   p_joint 5.086957e-04

Joint ci ratio: 3.423978e-01	ci left: 4.525803e-04	ci right 6.431525e-04	k: 130	n:240000
Cons ci ratio: 4.063933e-03	ci left: 7.933249e-01	ci right 7.965596e-01	k: 190787	n:240000
KS ci ratio: 3.423978e-01	ci left: 4.525803e-04	ci right 6.431525e-04	k: 130	n:240000
STAM2   240000 perm   62 sec   (3884 perm/sec)   p_kst 5.416667e-04   p_cons 7.949458e-01   p_joint 5.416667e-04

Joint ci ratio: 3.385450e-01	ci left: 4.454509e-04	ci right 6.304491e-04	k: 133	n:250000
Cons ci ratio: 3.981603e-03	ci left: 7.933760e-01	ci right 7.965452e-01	k: 198741	n:250000
KS ci ratio: 3.385450e-01	ci left: 4.454509e-04	ci right 6.304491e-04	k: 133	n:250000
STAM2   250000 perm   65 sec   (3827 perm/sec)   p_kst 5.320000e-04   p_cons 7.949640e-01   p_joint 5.320000e-04

Joint ci ratio: 3.300334e-01	ci left: 4.529822e-04	ci right 6.353749e-04	k: 140	n:260000
Cons ci ratio: 3.904128e-03	ci left: 7.934199e-01	ci right 7.965274e-01	k: 206694	n:260000
KS ci ratio: 3.300334e-01	ci left: 4.529822e-04	ci right 6.353749e-04	k: 140	n:260000
STAM2   260000 perm   69 sec   (3775 perm/sec)   p_kst 5.384615e-04   p_cons 7.949769e-01   p_joint 5.384615e-04

Joint ci ratio: 3.199771e-01	ci left: 4.668203e-04	ci right 6.478846e-04	k: 149	n:270000
Cons ci ratio: 3.831616e-03	ci left: 7.934091e-01	ci right 7.964586e-01	k: 214633	n:270000
KS ci ratio: 3.199771e-01	ci left: 4.668203e-04	ci right 6.478846e-04	k: 149	n:270000
STAM2   270000 perm   72 sec   (3724 perm/sec)   p_kst 5.518519e-04   p_cons 7.949370e-01   p_joint 5.518519e-04

Joint ci ratio: 3.168261e-01	ci left: 4.600060e-04	ci right 6.363140e-04	k: 152	n:280000
Cons ci ratio: 3.764112e-03	ci left: 7.933029e-01	ci right 7.962981e-01	k: 222545	n:280000
KS ci ratio: 3.168261e-01	ci left: 4.600060e-04	ci right 6.363140e-04	k: 152	n:280000
STAM2   280000 perm   76 sec   (3678 perm/sec)   p_kst 5.428571e-04   p_cons 7.948036e-01   p_joint 5.428571e-04

Joint ci ratio: 3.078977e-01	ci left: 4.727466e-04	ci right 6.478303e-04	k: 161	n:290000
Cons ci ratio: 3.699779e-03	ci left: 7.932287e-01	ci right 7.961723e-01	k: 230464	n:290000
KS ci ratio: 3.078977e-01	ci left: 4.727466e-04	ci right 6.478303e-04	k: 161	n:290000
STAM2   290000 perm   80 sec   (3632 perm/sec)   p_kst 5.551724e-04   p_cons 7.947034e-01   p_joint 5.551724e-04

Joint ci ratio: 3.023494e-01	ci left: 4.754576e-04	ci right 6.477623e-04	k: 167	n:300000
Cons ci ratio: 3.638078e-03	ci left: 7.932100e-01	ci right 7.961043e-01	k: 238398	n:300000
KS ci ratio: 3.023494e-01	ci left: 4.754576e-04	ci right 6.477623e-04	k: 167	n:300000
STAM2   300000 perm   84 sec   (3588 perm/sec)   p_kst 5.566667e-04   p_cons 7.946600e-01   p_joint 5.566667e-04

Joint ci ratio: 2.953968e-01	ci left: 4.839925e-04	ci right 6.546017e-04	k: 175	n:310000
Cons ci ratio: 3.577595e-03	ci left: 7.933546e-01	ci right 7.962012e-01	k: 246382	n:310000
KS ci ratio: 2.953968e-01	ci left: 4.839925e-04	ci right 6.546017e-04	k: 175	n:310000
STAM2   310000 perm   88 sec   (3540 perm/sec)   p_kst 5.645161e-04   p_cons 7.947806e-01   p_joint 5.645161e-04

Joint ci ratio: 2.904866e-01	ci left: 4.862402e-04	ci right 6.542691e-04	k: 181	n:320000
Cons ci ratio: 3.524179e-03	ci left: 7.931052e-01	ci right 7.959082e-01	k: 254243	n:320000
KS ci ratio: 2.904866e-01	ci left: 4.862402e-04	ci right 6.542691e-04	k: 181	n:320000
STAM2   320000 perm   92 sec   (3497 perm/sec)   p_kst 5.656250e-04   p_cons 7.945094e-01   p_joint 5.656250e-04

Joint ci ratio: 2.858135e-01	ci left: 4.883737e-04	ci right 6.539349e-04	k: 187	n:330000
Cons ci ratio: 3.468732e-03	ci left: 7.932813e-01	ci right 7.960408e-01	k: 262239	n:330000
KS ci ratio: 2.858135e-01	ci left: 4.883737e-04	ci right 6.539349e-04	k: 187	n:330000
STAM2   330000 perm   96 sec   (3455 perm/sec)   p_kst 5.666667e-04   p_cons 7.946636e-01   p_joint 5.666667e-04

Joint ci ratio: 2.835611e-01	ci left: 4.822031e-04	ci right 6.441537e-04	k: 190	n:340000
Cons ci ratio: 3.417206e-03	ci left: 7.933147e-01	ci right 7.960332e-01	k: 270190	n:340000
KS ci ratio: 2.835611e-01	ci left: 4.822031e-04	ci right 6.441537e-04	k: 190	n:340000
STAM2   340000 perm   100 sec   (3416 perm/sec)   p_kst 5.588235e-04   p_cons 7.946765e-01   p_joint 5.588235e-04

Joint ci ratio: 2.764157e-01	ci left: 4.949922e-04	ci right 6.563206e-04	k: 200	n:350000
Cons ci ratio: 3.367999e-03	ci left: 7.933379e-01	ci right 7.960172e-01	k: 278138	n:350000
KS ci ratio: 2.764157e-01	ci left: 4.949922e-04	ci right 6.563206e-04	k: 200	n:350000
STAM2   350000 perm   104 sec   (3371 perm/sec)   p_kst 5.714286e-04   p_cons 7.946800e-01   p_joint 5.714286e-04

Joint ci ratio: 2.723801e-01	ci left: 4.967625e-04	ci right 6.558999e-04	k: 206	n:360000
Cons ci ratio: 3.322243e-03	ci left: 7.932237e-01	ci right 7.958661e-01	k: 286037	n:360000
KS ci ratio: 2.723801e-01	ci left: 4.967625e-04	ci right 6.558999e-04	k: 206	n:360000
STAM2   360000 perm   108 sec   (3333 perm/sec)   p_kst 5.722222e-04   p_cons 7.945472e-01   p_joint 5.722222e-04

Joint ci ratio: 2.717263e-01	ci left: 4.858545e-04	ci right 6.410601e-04	k: 207	n:370000
Cons ci ratio: 3.278816e-03	ci left: 7.930643e-01	ci right 7.956716e-01	k: 293917	n:370000
KS ci ratio: 2.717263e-01	ci left: 4.858545e-04	ci right 6.410601e-04	k: 207	n:370000
STAM2   370000 perm   112 sec   (3294 perm/sec)   p_kst 5.594595e-04   p_cons 7.943703e-01   p_joint 5.594595e-04

Joint ci ratio: 2.685183e-01	ci left: 4.853357e-04	ci right 6.382370e-04	k: 212	n:380000
Cons ci ratio: 3.234987e-03	ci left: 7.931220e-01	ci right 7.956945e-01	k: 301876	n:380000
KS ci ratio: 2.685183e-01	ci left: 4.853357e-04	ci right 6.382370e-04	k: 212	n:380000
STAM2   380000 perm   117 sec   (3258 perm/sec)   p_kst 5.578947e-04   p_cons 7.944105e-01   p_joint 5.578947e-04

Joint ci ratio: 2.654213e-01	ci left: 4.848537e-04	ci right 6.355485e-04	k: 217	n:390000
Cons ci ratio: 3.192645e-03	ci left: 7.932001e-01	ci right 7.957391e-01	k: 309844	n:390000
KS ci ratio: 2.654213e-01	ci left: 4.848537e-04	ci right 6.355485e-04	k: 217	n:390000
STAM2   390000 perm   121 sec   (3222 perm/sec)   p_kst 5.564103e-04   p_cons 7.944718e-01   p_joint 5.564103e-04

Joint ci ratio: 2.612595e-01	ci left: 4.890774e-04	ci right 6.383121e-04	k: 224	n:400000
Cons ci ratio: 3.153635e-03	ci left: 7.930966e-01	ci right 7.956041e-01	k: 317741	n:400000
KS ci ratio: 2.612595e-01	ci left: 4.890774e-04	ci right 6.383121e-04	k: 224	n:400000
STAM2   400000 perm   126 sec   (3186 perm/sec)   p_kst 5.600000e-04   p_cons 7.943525e-01   p_joint 5.600000e-04

Joint ci ratio: 2.601072e-01	ci left: 4.817078e-04	ci right 6.279400e-04	k: 226	n:410000
Cons ci ratio: 3.114486e-03	ci left: 7.931597e-01	ci right 7.956362e-01	k: 325704	n:410000
KS ci ratio: 2.601072e-01	ci left: 4.817078e-04	ci right 6.279400e-04	k: 226	n:410000
STAM2   410000 perm   130 sec   (3152 perm/sec)   p_kst 5.512195e-04   p_cons 7.944000e-01   p_joint 5.512195e-04

Joint ci ratio: 2.567362e-01	ci left: 4.835991e-04	ci right 6.281980e-04	k: 232	n:420000
Cons ci ratio: 3.075548e-03	ci left: 7.933487e-01	ci right 7.957948e-01	k: 333721	n:420000
KS ci ratio: 2.567362e-01	ci left: 4.835991e-04	ci right 6.281980e-04	k: 232	n:420000
STAM2   420000 perm   135 sec   (3118 perm/sec)   p_kst 5.523810e-04   p_cons 7.945738e-01   p_joint 5.523810e-04

Joint ci ratio: 2.545609e-01	ci left: 4.810588e-04	ci right 6.234859e-04	k: 236	n:430000
Cons ci ratio: 3.039678e-03	ci left: 7.933521e-01	ci right 7.957696e-01	k: 341662	n:430000
KS ci ratio: 2.545609e-01	ci left: 4.810588e-04	ci right 6.234859e-04	k: 236	n:430000
STAM2   430000 perm   139 sec   (3083 perm/sec)   p_kst 5.488372e-04   p_cons 7.945628e-01   p_joint 5.488372e-04

Joint ci ratio: 2.519176e-01	ci left: 4.807681e-04	ci right 6.213992e-04	k: 241	n:440000
Cons ci ratio: 3.005829e-03	ci left: 7.932688e-01	ci right 7.956591e-01	k: 349565	n:440000
KS ci ratio: 2.519176e-01	ci left: 4.807681e-04	ci right 6.213992e-04	k: 241	n:440000
STAM2   440000 perm   144 sec   (3050 perm/sec)   p_kst 5.477273e-04   p_cons 7.944659e-01   p_joint 5.477273e-04

Joint ci ratio: 2.483509e-01	ci left: 4.846650e-04	ci right 6.241188e-04	k: 248	n:450000
Cons ci ratio: 2.972965e-03	ci left: 7.932028e-01	ci right 7.955667e-01	k: 357474	n:450000
KS ci ratio: 2.483509e-01	ci left: 4.846650e-04	ci right 6.241188e-04	k: 248	n:450000
STAM2   450000 perm   149 sec   (3019 perm/sec)   p_kst 5.511111e-04   p_cons 7.943867e-01   p_joint 5.511111e-04

Joint ci ratio: 2.425728e-01	ci left: 4.986119e-04	ci right 6.382385e-04	k: 260	n:460000
Cons ci ratio: 2.941526e-03	ci left: 7.930985e-01	ci right 7.954370e-01	k: 365364	n:460000
KS ci ratio: 2.425728e-01	ci left: 4.986119e-04	ci right 6.382385e-04	k: 260	n:460000
STAM2   460000 perm   154 sec   (2989 perm/sec)   p_kst 5.652174e-04   p_cons 7.942696e-01   p_joint 5.652174e-04

Joint ci ratio: 2.393836e-01	ci left: 5.019976e-04	ci right 6.404500e-04	k: 267	n:470000
Cons ci ratio: 2.910723e-03	ci left: 7.930370e-01	ci right 7.953508e-01	k: 373272	n:470000
KS ci ratio: 2.393836e-01	ci left: 5.019976e-04	ci right 6.404500e-04	k: 267	n:470000
STAM2   470000 perm   159 sec   (2958 perm/sec)   p_kst 5.680851e-04   p_cons 7.941957e-01   p_joint 5.680851e-04

Joint ci ratio: 2.354618e-01	ci left: 5.091743e-04	ci right 6.469702e-04	k: 276	n:480000
Cons ci ratio: 2.880811e-03	ci left: 7.929846e-01	ci right 7.952744e-01	k: 381183	n:480000
KS ci ratio: 2.354618e-01	ci left: 5.091743e-04	ci right 6.469702e-04	k: 276	n:480000
STAM2   480000 perm   164 sec   (2928 perm/sec)   p_kst 5.750000e-04   p_cons 7.941312e-01   p_joint 5.750000e-04

Joint ci ratio: 2.325415e-01	ci left: 5.122314e-04	ci right 6.488883e-04	k: 283	n:490000
Cons ci ratio: 2.852212e-03	ci left: 7.928874e-01	ci right 7.951541e-01	k: 389071	n:490000
KS ci ratio: 2.325415e-01	ci left: 5.122314e-04	ci right 6.488883e-04	k: 283	n:490000
STAM2   490000 perm   169 sec   (2901 perm/sec)   p_kst 5.775510e-04   p_cons 7.940224e-01   p_joint 5.775510e-04

Joint ci ratio: 2.293334e-01	ci left: 5.170613e-04	ci right 6.528344e-04	k: 291	n:500000
Cons ci ratio: 2.823308e-03	ci left: 7.929264e-01	ci right 7.951702e-01	k: 397025	n:500000
KS ci ratio: 2.293334e-01	ci left: 5.170613e-04	ci right 6.528344e-04	k: 291	n:500000
STAM2   500000 perm   174 sec   (2873 perm/sec)   p_kst 5.820000e-04   p_cons 7.940500e-01   p_joint 5.820000e-04

Joint ci ratio: 2.273950e-01	ci left: 5.161659e-04	ci right 6.503975e-04	k: 296	n:510000
Cons ci ratio: 2.794562e-03	ci left: 7.930465e-01	ci right 7.952678e-01	k: 405021	n:510000
KS ci ratio: 2.273950e-01	ci left: 5.161659e-04	ci right 6.503975e-04	k: 296	n:510000
STAM2   510000 perm   179 sec   (2845 perm/sec)   p_kst 5.803922e-04   p_cons 7.941588e-01   p_joint 5.803922e-04

Joint ci ratio: 2.243925e-01	ci left: 5.207539e-04	ci right 6.541434e-04	k: 304	n:520000
Cons ci ratio: 2.767895e-03	ci left: 7.930176e-01	ci right 7.952176e-01	k: 412942	n:520000
KS ci ratio: 2.243925e-01	ci left: 5.207539e-04	ci right 6.541434e-04	k: 304	n:520000
STAM2   520000 perm   185 sec   (2817 perm/sec)   p_kst 5.846154e-04   p_cons 7.941192e-01   p_joint 5.846154e-04

Joint ci ratio: 2.225757e-01	ci left: 5.198342e-04	ci right 6.517623e-04	k: 309	n:530000
Cons ci ratio: 2.742864e-03	ci left: 7.928841e-01	ci right 7.950637e-01	k: 420807	n:530000
KS ci ratio: 2.225757e-01	ci left: 5.198342e-04	ci right 6.517623e-04	k: 309	n:530000
STAM2   530000 perm   190 sec   (2790 perm/sec)   p_kst 5.830189e-04   p_cons 7.939755e-01   p_joint 5.830189e-04

Joint ci ratio: 2.204525e-01	ci left: 5.207023e-04	ci right 6.514192e-04	k: 315	n:540000
Cons ci ratio: 2.716837e-03	ci left: 7.929559e-01	ci right 7.951150e-01	k: 428780	n:540000
KS ci ratio: 2.204525e-01	ci left: 5.207023e-04	ci right 6.514192e-04	k: 315	n:540000
STAM2   540000 perm   195 sec   (2764 perm/sec)   p_kst 5.833333e-04   p_cons 7.940370e-01   p_joint 5.833333e-04

Joint ci ratio: 2.190707e-01	ci left: 5.181074e-04	ci right 6.472477e-04	k: 319	n:550000
Cons ci ratio: 2.692629e-03	ci left: 7.928923e-01	ci right 7.950319e-01	k: 436680	n:550000
KS ci ratio: 2.190707e-01	ci left: 5.181074e-04	ci right 6.472477e-04	k: 319	n:550000
STAM2   550000 perm   201 sec   (2738 perm/sec)   p_kst 5.800000e-04   p_cons 7.939636e-01   p_joint 5.800000e-04

Joint ci ratio: 2.177146e-01	ci left: 5.156075e-04	ci right 6.432228e-04	k: 323	n:560000
Cons ci ratio: 2.668737e-03	ci left: 7.928704e-01	ci right 7.949909e-01	k: 444602	n:560000
KS ci ratio: 2.177146e-01	ci left: 5.156075e-04	ci right 6.432228e-04	k: 323	n:560000
STAM2   560000 perm   206 sec   (2712 perm/sec)   p_kst 5.767857e-04   p_cons 7.939321e-01   p_joint 5.767857e-04

Joint ci ratio: 2.144298e-01	ci left: 5.231565e-04	ci right 6.504297e-04	k: 333	n:570000
Cons ci ratio: 2.645809e-03	ci left: 7.928071e-01	ci right 7.949092e-01	k: 452500	n:570000
KS ci ratio: 2.144298e-01	ci left: 5.231565e-04	ci right 6.504297e-04	k: 333	n:570000
STAM2   570000 perm   212 sec   (2689 perm/sec)   p_kst 5.842105e-04   p_cons 7.938596e-01   p_joint 5.842105e-04

Joint ci ratio: 2.128428e-01	ci left: 5.222960e-04	ci right 6.482966e-04	k: 338	n:580000
Cons ci ratio: 2.622481e-03	ci left: 7.928688e-01	ci right 7.949525e-01	k: 460469	n:580000
KS ci ratio: 2.128428e-01	ci left: 5.222960e-04	ci right 6.482966e-04	k: 338	n:580000
STAM2   580000 perm   218 sec   (2666 perm/sec)   p_kst 5.827586e-04   p_cons 7.939121e-01   p_joint 5.827586e-04

Joint ci ratio: 2.119077e-01	ci left: 5.182578e-04	ci right 6.426635e-04	k: 341	n:590000
Cons ci ratio: 2.600190e-03	ci left: 7.928740e-01	ci right 7.949400e-01	k: 468406	n:590000
KS ci ratio: 2.119077e-01	ci left: 5.182578e-04	ci right 6.426635e-04	k: 341	n:590000
STAM2   590000 perm   223 sec   (2643 perm/sec)   p_kst 5.779661e-04   p_cons 7.939085e-01   p_joint 5.779661e-04

Joint ci ratio: 2.091727e-01	ci left: 5.238294e-04	ci right 6.477420e-04	k: 350	n:600000
Cons ci ratio: 2.577907e-03	ci left: 7.929494e-01	ci right 7.949978e-01	k: 476385	n:600000
KS ci ratio: 2.091727e-01	ci left: 5.238294e-04	ci right 6.477420e-04	k: 350	n:600000
STAM2   600000 perm   229 sec   (2619 perm/sec)   p_kst 5.833333e-04   p_cons 7.939750e-01   p_joint 5.833333e-04

Joint ci ratio: 2.079913e-01	ci left: 5.214569e-04	ci right 6.440227e-04	k: 354	n:610000
Cons ci ratio: 2.556084e-03	ci left: 7.930354e-01	ci right 7.950667e-01	k: 484372	n:610000
KS ci ratio: 2.079913e-01	ci left: 5.214569e-04	ci right 6.440227e-04	k: 354	n:610000
STAM2   610000 perm   235 sec   (2596 perm/sec)   p_kst 5.803279e-04   p_cons 7.940525e-01   p_joint 5.803279e-04

Joint ci ratio: 2.065420e-01	ci left: 5.206922e-04	ci right 6.421178e-04	k: 359	n:620000
Cons ci ratio: 2.535718e-03	ci left: 7.930008e-01	ci right 7.950158e-01	k: 492286	n:620000
KS ci ratio: 2.065420e-01	ci left: 5.206922e-04	ci right 6.421178e-04	k: 359	n:620000
STAM2   620000 perm   241 sec   (2571 perm/sec)   p_kst 5.790323e-04   p_cons 7.940097e-01   p_joint 5.790323e-04

Joint ci ratio: 2.045626e-01	ci left: 5.229665e-04	ci right 6.436076e-04	k: 366	n:630000
Cons ci ratio: 2.514867e-03	ci left: 7.930930e-01	ci right 7.950916e-01	k: 500279	n:630000
KS ci ratio: 2.045626e-01	ci left: 5.229665e-04	ci right 6.436076e-04	k: 366	n:630000
STAM2   630000 perm   247 sec   (2550 perm/sec)   p_kst 5.809524e-04   p_cons 7.940937e-01   p_joint 5.809524e-04

Joint ci ratio: 2.029106e-01	ci left: 5.236920e-04	ci right 6.434038e-04	k: 372	n:640000
Cons ci ratio: 2.495606e-03	ci left: 7.930399e-01	ci right 7.950230e-01	k: 508181	n:640000
KS ci ratio: 2.029106e-01	ci left: 5.236920e-04	ci right 6.434038e-04	k: 372	n:640000
STAM2   640000 perm   253 sec   (2528 perm/sec)   p_kst 5.812500e-04   p_cons 7.940328e-01   p_joint 5.812500e-04

Joint ci ratio: 2.018316e-01	ci left: 5.214771e-04	ci right 6.399707e-04	k: 376	n:650000
Cons ci ratio: 2.476851e-03	ci left: 7.929793e-01	ci right 7.949473e-01	k: 516077	n:650000
KS ci ratio: 2.018316e-01	ci left: 5.214771e-04	ci right 6.399707e-04	k: 376	n:650000
STAM2   650000 perm   259 sec   (2507 perm/sec)   p_kst 5.784615e-04   p_cons 7.939646e-01   p_joint 5.784615e-04

Joint ci ratio: 2.005064e-01	ci left: 5.207701e-04	ci right 6.382310e-04	k: 381	n:660000
Cons ci ratio: 2.458330e-03	ci left: 7.929448e-01	ci right 7.948980e-01	k: 523989	n:660000
KS ci ratio: 2.005064e-01	ci left: 5.207701e-04	ci right 6.382310e-04	k: 381	n:660000
STAM2   660000 perm   266 sec   (2485 perm/sec)   p_kst 5.772727e-04   p_cons 7.939227e-01   p_joint 5.772727e-04

Joint ci ratio: 1.999842e-01	ci left: 5.158327e-04	ci right 6.318399e-04	k: 383	n:670000
Cons ci ratio: 2.439762e-03	ci left: 7.929728e-01	ci right 7.949113e-01	k: 531942	n:670000
KS ci ratio: 1.999842e-01	ci left: 5.158327e-04	ci right 6.318399e-04	k: 383	n:670000
STAM2   670000 perm   272 sec   (2464 perm/sec)   p_kst 5.716418e-04   p_cons 7.939433e-01   p_joint 5.716418e-04

Joint ci ratio: 1.984398e-01	ci left: 5.166304e-04	ci right 6.318112e-04	k: 389	n:680000
Cons ci ratio: 2.421598e-03	ci left: 7.930014e-01	ci right 7.949255e-01	k: 539896	n:680000
KS ci ratio: 1.984398e-01	ci left: 5.166304e-04	ci right 6.318112e-04	k: 389	n:680000
STAM2   680000 perm   278 sec   (2443 perm/sec)   p_kst 5.720588e-04   p_cons 7.939647e-01   p_joint 5.720588e-04

Joint ci ratio: 1.969307e-01	ci left: 5.174082e-04	ci right 6.317800e-04	k: 395	n:690000
Cons ci ratio: 2.404632e-03	ci left: 7.929204e-01	ci right 7.948308e-01	k: 547775	n:690000
KS ci ratio: 1.969307e-01	ci left: 5.174082e-04	ci right 6.317800e-04	k: 395	n:690000
STAM2   690000 perm   285 sec   (2423 perm/sec)   p_kst 5.724638e-04   p_cons 7.938768e-01   p_joint 5.724638e-04

Joint ci ratio: 1.961894e-01	ci left: 5.140914e-04	ci right 6.272511e-04	k: 398	n:700000
Cons ci ratio: 2.387173e-03	ci left: 7.929576e-01	ci right 7.948542e-01	k: 555735	n:700000
KS ci ratio: 1.961894e-01	ci left: 5.140914e-04	ci right 6.272511e-04	k: 398	n:700000
STAM2   700000 perm   291 sec   (2403 perm/sec)   p_kst 5.685714e-04   p_cons 7.939071e-01   p_joint 5.685714e-04

Joint ci ratio: 1.937756e-01	ci left: 5.202478e-04	ci right 6.331875e-04	k: 408	n:710000
Cons ci ratio: 2.370690e-03	ci left: 7.929106e-01	ci right 7.947940e-01	k: 563636	n:710000
KS ci ratio: 1.937756e-01	ci left: 5.202478e-04	ci right 6.331875e-04	k: 408	n:710000
STAM2   710000 perm   298 sec   (2383 perm/sec)   p_kst 5.746479e-04   p_cons 7.938535e-01   p_joint 5.746479e-04

Joint ci ratio: 1.912205e-01	ci left: 5.275639e-04	ci right 6.404062e-04	k: 419	n:720000
Cons ci ratio: 2.353296e-03	ci left: 7.930389e-01	ci right 7.949087e-01	k: 571662	n:720000
KS ci ratio: 1.912205e-01	ci left: 5.275639e-04	ci right 6.404062e-04	k: 419	n:720000
STAM2   720000 perm   305 sec   (2363 perm/sec)   p_kst 5.819444e-04   p_cons 7.939750e-01   p_joint 5.819444e-04

Joint ci ratio: 1.903166e-01	ci left: 5.255547e-04	ci right 6.373744e-04	k: 423	n:730000
Cons ci ratio: 2.337129e-03	ci left: 7.930443e-01	ci right 7.949013e-01	k: 579601	n:730000
KS ci ratio: 1.903166e-01	ci left: 5.255547e-04	ci right 6.373744e-04	k: 423	n:730000
STAM2   730000 perm   312 sec   (2343 perm/sec)   p_kst 5.794521e-04   p_cons 7.939740e-01   p_joint 5.794521e-04

Joint ci ratio: 1.885459e-01	ci left: 5.287508e-04	ci right 6.400840e-04	k: 431	n:740000
Cons ci ratio: 2.320649e-03	ci left: 7.931403e-01	ci right 7.949844e-01	k: 587607	n:740000
KS ci ratio: 1.885459e-01	ci left: 5.287508e-04	ci right 6.400840e-04	k: 431	n:740000
STAM2   740000 perm   318 sec   (2324 perm/sec)   p_kst 5.824324e-04   p_cons 7.940635e-01   p_joint 5.824324e-04

Joint ci ratio: 1.870365e-01	ci left: 5.305954e-04	ci right 6.413211e-04	k: 438	n:750000
Cons ci ratio: 2.305602e-03	ci left: 7.930789e-01	ci right 7.949108e-01	k: 595497	n:750000
KS ci ratio: 1.870365e-01	ci left: 5.305954e-04	ci right 6.413211e-04	k: 438	n:750000
STAM2   750000 perm   325 sec   (2305 perm/sec)   p_kst 5.840000e-04   p_cons 7.939960e-01   p_joint 5.840000e-04

Joint ci ratio: 1.855628e-01	ci left: 5.323949e-04	ci right 6.425222e-04	k: 445	n:760000
Cons ci ratio: 2.289904e-03	ci left: 7.931535e-01	ci right 7.949732e-01	k: 603489	n:760000
KS ci ratio: 1.855628e-01	ci left: 5.323949e-04	ci right 6.425222e-04	k: 445	n:760000
STAM2   760000 perm   332 sec   (2286 perm/sec)   p_kst 5.855263e-04   p_cons 7.940645e-01   p_joint 5.855263e-04

Joint ci ratio: 1.849422e-01	ci left: 5.291961e-04	ci right 6.382544e-04	k: 448	n:770000
Cons ci ratio: 2.275425e-03	ci left: 7.930962e-01	ci right 7.949042e-01	k: 611381	n:770000
KS ci ratio: 1.849422e-01	ci left: 5.291961e-04	ci right 6.382544e-04	k: 448	n:770000
STAM2   770000 perm   339 sec   (2268 perm/sec)   p_kst 5.818182e-04   p_cons 7.940013e-01   p_joint 5.818182e-04

Joint ci ratio: 1.835170e-01	ci left: 5.309720e-04	ci right 6.394594e-04	k: 455	n:780000
Cons ci ratio: 2.260872e-03	ci left: 7.930905e-01	ci right 7.948868e-01	k: 619312	n:780000
KS ci ratio: 1.835170e-01	ci left: 5.309720e-04	ci right 6.394594e-04	k: 455	n:780000
STAM2   780000 perm   346 sec   (2251 perm/sec)   p_kst 5.833333e-04   p_cons 7.939897e-01   p_joint 5.833333e-04

Joint ci ratio: 1.829167e-01	ci left: 5.278741e-04	ci right 6.353365e-04	k: 458	n:790000
Cons ci ratio: 2.246577e-03	ci left: 7.930874e-01	ci right 7.948724e-01	k: 627245	n:790000
KS ci ratio: 1.829167e-01	ci left: 5.278741e-04	ci right 6.353365e-04	k: 458	n:790000
STAM2   790000 perm   354 sec   (2234 perm/sec)   p_kst 5.797468e-04   p_cons 7.939810e-01   p_joint 5.797468e-04

Joint ci ratio: 1.823221e-01	ci left: 5.248542e-04	ci right 6.313162e-04	k: 461	n:800000
Cons ci ratio: 2.232225e-03	ci left: 7.931321e-01	ci right 7.949058e-01	k: 635216	n:800000
KS ci ratio: 1.823221e-01	ci left: 5.248542e-04	ci right 6.313162e-04	k: 461	n:800000
STAM2   800000 perm   361 sec   (2216 perm/sec)   p_kst 5.762500e-04   p_cons 7.940200e-01   p_joint 5.762500e-04

Joint ci ratio: 1.811496e-01	ci left: 5.254449e-04	ci right 6.312661e-04	k: 467	n:810000
Cons ci ratio: 2.218531e-03	ci left: 7.931188e-01	ci right 7.948815e-01	k: 643141	n:810000
KS ci ratio: 1.811496e-01	ci left: 5.254449e-04	ci right 6.312661e-04	k: 467	n:810000
STAM2   810000 perm   368 sec   (2200 perm/sec)   p_kst 5.765432e-04   p_cons 7.940012e-01   p_joint 5.765432e-04

Joint ci ratio: 1.798097e-01	ci left: 5.271881e-04	ci right 6.324895e-04	k: 474	n:820000
Cons ci ratio: 2.204707e-03	ci left: 7.931621e-01	ci right 7.949139e-01	k: 651112	n:820000
KS ci ratio: 1.798097e-01	ci left: 5.271881e-04	ci right 6.324895e-04	k: 474	n:820000
STAM2   820000 perm   375 sec   (2184 perm/sec)   p_kst 5.780488e-04   p_cons 7.940390e-01   p_joint 5.780488e-04

Joint ci ratio: 1.790576e-01	ci left: 5.254392e-04	ci right 6.299047e-04	k: 478	n:830000
Cons ci ratio: 2.191429e-03	ci left: 7.931609e-01	ci right 7.949021e-01	k: 659047	n:830000
KS ci ratio: 1.790576e-01	ci left: 5.254392e-04	ci right 6.299047e-04	k: 478	n:830000
STAM2   830000 perm   383 sec   (2169 perm/sec)   p_kst 5.759036e-04   p_cons 7.940325e-01   p_joint 5.759036e-04

Joint ci ratio: 1.775806e-01	ci left: 5.282827e-04	ci right 6.323542e-04	k: 486	n:840000
Cons ci ratio: 2.178697e-03	ci left: 7.931132e-01	ci right 7.948442e-01	k: 666943	n:840000
KS ci ratio: 1.775806e-01	ci left: 5.282827e-04	ci right 6.323542e-04	k: 486	n:840000
STAM2   840000 perm   390 sec   (2153 perm/sec)   p_kst 5.785714e-04   p_cons 7.939798e-01   p_joint 5.785714e-04

Joint ci ratio: 1.764966e-01	ci left: 5.288137e-04	ci right 6.322861e-04	k: 492	n:850000
Cons ci ratio: 2.165584e-03	ci left: 7.931575e-01	ci right 7.948782e-01	k: 674916	n:850000
KS ci ratio: 1.764966e-01	ci left: 5.288137e-04	ci right 6.322861e-04	k: 492	n:850000
STAM2   850000 perm   398 sec   (2137 perm/sec)   p_kst 5.788235e-04   p_cons 7.940188e-01   p_joint 5.788235e-04

Joint ci ratio: 1.757851e-01	ci left: 5.271108e-04	ci right 6.297900e-04	k: 496	n:860000
Cons ci ratio: 2.153119e-03	ci left: 7.931378e-01	ci right 7.948485e-01	k: 682835	n:860000
KS ci ratio: 1.757851e-01	ci left: 5.271108e-04	ci right 6.297900e-04	k: 496	n:860000
STAM2   860000 perm   405 sec   (2122 perm/sec)   p_kst 5.767442e-04   p_cons 7.939942e-01   p_joint 5.767442e-04

Joint ci ratio: 1.750822e-01	ci left: 5.254478e-04	ci right 6.273505e-04	k: 500	n:870000
Cons ci ratio: 2.140017e-03	ci left: 7.932488e-01	ci right 7.949493e-01	k: 690867	n:870000
KS ci ratio: 1.750822e-01	ci left: 5.254478e-04	ci right 6.273505e-04	k: 500	n:870000
STAM2   870000 perm   413 sec   (2107 perm/sec)   p_kst 5.747126e-04   p_cons 7.941000e-01   p_joint 5.747126e-04

Joint ci ratio: 1.743876e-01	ci left: 5.238234e-04	ci right 6.249656e-04	k: 504	n:880000
Cons ci ratio: 2.127497e-03	ci left: 7.933037e-01	ci right 7.949944e-01	k: 698852	n:880000
KS ci ratio: 1.743876e-01	ci left: 5.238234e-04	ci right 6.249656e-04	k: 504	n:880000
STAM2   880000 perm   421 sec   (2091 perm/sec)   p_kst 5.727273e-04   p_cons 7.941500e-01   p_joint 5.727273e-04

Joint ci ratio: 1.728538e-01	ci left: 5.276108e-04	ci right 6.284947e-04	k: 513	n:890000
Cons ci ratio: 2.115530e-03	ci left: 7.933057e-01	ci right 7.949868e-01	k: 706791	n:890000
KS ci ratio: 1.728538e-01	ci left: 5.276108e-04	ci right 6.284947e-04	k: 513	n:890000
STAM2   890000 perm   429 sec   (2076 perm/sec)   p_kst 5.764045e-04   p_cons 7.941472e-01   p_joint 5.764045e-04

Joint ci ratio: 1.716885e-01	ci left: 5.291909e-04	ci right 6.296242e-04	k: 520	n:900000
Cons ci ratio: 2.103568e-03	ci left: 7.933377e-01	ci right 7.950093e-01	k: 714757	n:900000
KS ci ratio: 1.716885e-01	ci left: 5.291909e-04	ci right 6.296242e-04	k: 520	n:900000
STAM2   900000 perm   437 sec   (2062 perm/sec)   p_kst 5.777778e-04   p_cons 7.941744e-01   p_joint 5.777778e-04

Joint ci ratio: 1.708706e-01	ci left: 5.286346e-04	ci right 6.284351e-04	k: 525	n:910000
Cons ci ratio: 2.092152e-03	ci left: 7.933150e-01	ci right 7.949776e-01	k: 722674	n:910000
KS ci ratio: 1.708706e-01	ci left: 5.286346e-04	ci right 6.284351e-04	k: 525	n:910000
STAM2   910000 perm   444 sec   (2048 perm/sec)   p_kst 5.769231e-04   p_cons 7.941473e-01   p_joint 5.769231e-04

Joint ci ratio: 1.700643e-01	ci left: 5.280914e-04	ci right 6.272708e-04	k: 530	n:920000
Cons ci ratio: 2.080706e-03	ci left: 7.933267e-01	ci right 7.949801e-01	k: 730622	n:920000
KS ci ratio: 1.700643e-01	ci left: 5.280914e-04	ci right 6.272708e-04	k: 530	n:920000
STAM2   920000 perm   452 sec   (2034 perm/sec)   p_kst 5.760870e-04   p_cons 7.941543e-01   p_joint 5.760870e-04

Joint ci ratio: 1.694275e-01	ci left: 5.265314e-04	ci right 6.250096e-04	k: 534	n:930000
Cons ci ratio: 2.070010e-03	ci left: 7.932487e-01	ci right 7.948935e-01	k: 738487	n:930000
KS ci ratio: 1.694275e-01	ci left: 5.265314e-04	ci right 6.250096e-04	k: 534	n:930000
STAM2   930000 perm   461 sec   (2019 perm/sec)   p_kst 5.741935e-04   p_cons 7.940720e-01   p_joint 5.741935e-04

Joint ci ratio: 1.687978e-01	ci left: 5.250051e-04	ci right 6.227959e-04	k: 538	n:940000
Cons ci ratio: 2.059182e-03	ci left: 7.932193e-01	ci right 7.948554e-01	k: 746396	n:940000
KS ci ratio: 1.687978e-01	ci left: 5.250051e-04	ci right 6.227959e-04	k: 538	n:940000
STAM2   940000 perm   469 sec   (2005 perm/sec)   p_kst 5.723404e-04   p_cons 7.940383e-01   p_joint 5.723404e-04

Joint ci ratio: 1.680204e-01	ci left: 5.245201e-04	ci right 6.217249e-04	k: 543	n:950000
Cons ci ratio: 2.048134e-03	ci left: 7.932528e-01	ci right 7.948802e-01	k: 754364	n:950000
KS ci ratio: 1.680204e-01	ci left: 5.245201e-04	ci right 6.217249e-04	k: 543	n:950000
STAM2   950000 perm   477 sec   (1991 perm/sec)   p_kst 5.715789e-04   p_cons 7.940674e-01   p_joint 5.715789e-04

Joint ci ratio: 1.667982e-01	ci left: 5.270406e-04	ci right 6.239307e-04	k: 551	n:960000
Cons ci ratio: 2.037560e-03	ci left: 7.932376e-01	ci right 7.948565e-01	k: 762286	n:960000
KS ci ratio: 1.667982e-01	ci left: 5.270406e-04	ci right 6.239307e-04	k: 551	n:960000
STAM2   960000 perm   486 sec   (1977 perm/sec)   p_kst 5.739583e-04   p_cons 7.940479e-01   p_joint 5.739583e-04

Joint ci ratio: 1.661973e-01	ci left: 5.255590e-04	ci right 6.217939e-04	k: 555	n:970000
Cons ci ratio: 2.026771e-03	ci left: 7.932836e-01	ci right 7.948940e-01	k: 770267	n:970000
KS ci ratio: 1.661973e-01	ci left: 5.255590e-04	ci right 6.217939e-04	k: 555	n:970000
STAM2   970000 perm   494 sec   (1965 perm/sec)   p_kst 5.721649e-04   p_cons 7.940897e-01   p_joint 5.721649e-04

Joint ci ratio: 1.653077e-01	ci left: 5.260647e-04	ci right 6.218252e-04	k: 561	n:980000
Cons ci ratio: 2.016585e-03	ci left: 7.932582e-01	ci right 7.948605e-01	k: 778179	n:980000
KS ci ratio: 1.653077e-01	ci left: 5.260647e-04	ci right 6.218252e-04	k: 561	n:980000
STAM2   980000 perm   502 sec   (1952 perm/sec)   p_kst 5.724490e-04   p_cons 7.940602e-01   p_joint 5.724490e-04

Joint ci ratio: 1.645773e-01	ci left: 5.255929e-04	ci right 6.208029e-04	k: 566	n:990000
Cons ci ratio: 2.006428e-03	ci left: 7.932536e-01	ci right 7.948477e-01	k: 786111	n:990000
KS ci ratio: 1.645773e-01	ci left: 5.255929e-04	ci right 6.208029e-04	k: 566	n:990000
STAM2   990000 perm   511 sec   (1939 perm/sec)   p_kst 5.717172e-04   p_cons 7.940515e-01   p_joint 5.717172e-04

Joint ci ratio: 1.641438e-01	ci left: 5.232135e-04	ci right 6.177183e-04	k: 569	n:1000000
Cons ci ratio: 1.996410e-03	ci left: 7.932510e-01	ci right 7.948373e-01	k: 794045	n:1000000
KS ci ratio: 1.641438e-01	ci left: 5.232135e-04	ci right 6.177183e-04	k: 569	n:1000000
STAM2   1000000 perm   519 sec   (1927 perm/sec)   p_kst 5.690000e-04   p_cons 7.940450e-01   p_joint 5.690000e-04

Joint ci ratio: 1.632867e-01	ci left: 5.237304e-04	ci right 6.177860e-04	k: 575	n:1010000
Cons ci ratio: 1.986625e-03	ci left: 7.932347e-01	ci right 7.948131e-01	k: 801965	n:1010000
KS ci ratio: 1.632867e-01	ci left: 5.237304e-04	ci right 6.177860e-04	k: 575	n:1010000
STAM2   1010000 perm   527 sec   (1915 perm/sec)   p_kst 5.693069e-04   p_cons 7.940248e-01   p_joint 5.693069e-04

Joint ci ratio: 1.624428e-01	ci left: 5.242384e-04	ci right 6.178512e-04	k: 581	n:1020000
Cons ci ratio: 1.977001e-03	ci left: 7.932158e-01	ci right 7.947865e-01	k: 809882	n:1020000
KS ci ratio: 1.624428e-01	ci left: 5.242384e-04	ci right 6.178512e-04	k: 581	n:1020000
STAM2   1020000 perm   536 sec   (1902 perm/sec)   p_kst 5.696078e-04   p_cons 7.940020e-01   p_joint 5.696078e-04

Joint ci ratio: 1.614745e-01	ci left: 5.256694e-04	ci right 6.189239e-04	k: 588	n:1030000
Cons ci ratio: 1.967048e-03	ci left: 7.932750e-01	ci right 7.948379e-01	k: 817879	n:1030000
KS ci ratio: 1.614745e-01	ci left: 5.256694e-04	ci right 6.189239e-04	k: 588	n:1030000
STAM2   1030000 perm   545 sec   (1891 perm/sec)   p_kst 5.708738e-04   p_cons 7.940573e-01   p_joint 5.708738e-04

Joint ci ratio: 1.610651e-01	ci left: 5.233831e-04	ci right 6.159737e-04	k: 591	n:1040000
Cons ci ratio: 1.957652e-03	ci left: 7.932648e-01	ci right 7.948201e-01	k: 825805	n:1040000
KS ci ratio: 1.610651e-01	ci left: 5.233831e-04	ci right 6.159737e-04	k: 591	n:1040000
STAM2   1040000 perm   554 sec   (1879 perm/sec)   p_kst 5.682692e-04   p_cons 7.940433e-01   p_joint 5.682692e-04

Joint ci ratio: 1.601211e-01	ci left: 5.247972e-04	ci right 6.170416e-04	k: 598	n:1050000
Cons ci ratio: 1.948503e-03	ci left: 7.932356e-01	ci right 7.947837e-01	k: 833711	n:1050000
KS ci ratio: 1.601211e-01	ci left: 5.247972e-04	ci right 6.170416e-04	k: 598	n:1050000
STAM2   1050000 perm   562 sec   (1867 perm/sec)   p_kst 5.695238e-04   p_cons 7.940105e-01   p_joint 5.695238e-04

Joint ci ratio: 1.598547e-01	ci left: 5.216575e-04	ci right 6.131828e-04	k: 600	n:1060000
Cons ci ratio: 1.938949e-03	ci left: 7.932968e-01	ci right 7.948374e-01	k: 841712	n:1060000
KS ci ratio: 1.598547e-01	ci left: 5.216575e-04	ci right 6.131828e-04	k: 600	n:1060000
STAM2   1060000 perm   571 sec   (1856 perm/sec)   p_kst 5.660377e-04   p_cons 7.940679e-01   p_joint 5.660377e-04

Joint ci ratio: 1.588011e-01	ci left: 5.239608e-04	ci right 6.152266e-04	k: 608	n:1070000
Cons ci ratio: 1.929755e-03	ci left: 7.933195e-01	ci right 7.948528e-01	k: 849673	n:1070000
KS ci ratio: 1.588011e-01	ci left: 5.239608e-04	ci right 6.152266e-04	k: 608	n:1070000
STAM2   1070000 perm   580 sec   (1844 perm/sec)   p_kst 5.682243e-04   p_cons 7.940869e-01   p_joint 5.682243e-04

Joint ci ratio: 1.584116e-01	ci left: 5.217768e-04	ci right 6.124180e-04	k: 611	n:1080000
Cons ci ratio: 1.920909e-03	ci left: 7.933046e-01	ci right 7.948308e-01	k: 857594	n:1080000
KS ci ratio: 1.584116e-01	ci left: 5.217768e-04	ci right 6.124180e-04	k: 611	n:1080000
STAM2   1080000 perm   589 sec   (1833 perm/sec)   p_kst 5.657407e-04   p_cons 7.940685e-01   p_joint 5.657407e-04

Joint ci ratio: 1.581537e-01	ci left: 5.187520e-04	ci right 6.087071e-04	k: 613	n:1090000
Cons ci ratio: 1.912418e-03	ci left: 7.932496e-01	ci right 7.947690e-01	k: 865471	n:1090000
KS ci ratio: 1.581537e-01	ci left: 5.187520e-04	ci right 6.087071e-04	k: 613	n:1090000
STAM2   1090000 perm   598 sec   (1822 perm/sec)   p_kst 5.623853e-04   p_cons 7.940101e-01   p_joint 5.623853e-04

Joint ci ratio: 1.575137e-01	ci left: 5.184020e-04	ci right 6.078982e-04	k: 618	n:1100000
Cons ci ratio: 1.903558e-03	ci left: 7.932785e-01	ci right 7.947909e-01	k: 873439	n:1100000
KS ci ratio: 1.575137e-01	ci left: 5.184020e-04	ci right 6.078982e-04	k: 618	n:1100000
STAM2   1100000 perm   607 sec   (1811 perm/sec)   p_kst 5.618182e-04   p_cons 7.940355e-01   p_joint 5.618182e-04

Joint ci ratio: 1.570073e-01	ci left: 5.171934e-04	ci right 6.061670e-04	k: 622	n:1110000
Cons ci ratio: 1.894971e-03	ci left: 7.932807e-01	ci right 7.947862e-01	k: 881378	n:1110000
KS ci ratio: 1.570073e-01	ci left: 5.171934e-04	ci right 6.061670e-04	k: 622	n:1110000
STAM2   1110000 perm   616 sec   (1801 perm/sec)   p_kst 5.603604e-04   p_cons 7.940342e-01   p_joint 5.603604e-04

Joint ci ratio: 1.565058e-01	ci left: 5.160069e-04	ci right 6.044662e-04	k: 626	n:1120000
Cons ci ratio: 1.886288e-03	ci left: 7.933195e-01	ci right 7.948182e-01	k: 889358	n:1120000
KS ci ratio: 1.565058e-01	ci left: 5.160069e-04	ci right 6.044662e-04	k: 626	n:1120000
STAM2   1120000 perm   626 sec   (1790 perm/sec)   p_kst 5.589286e-04   p_cons 7.940696e-01   p_joint 5.589286e-04

Joint ci ratio: 1.556393e-01	ci left: 5.173933e-04	ci right 6.055534e-04	k: 633	n:1130000
Cons ci ratio: 1.878089e-03	ci left: 7.932939e-01	ci right 7.947860e-01	k: 897266	n:1130000
KS ci ratio: 1.556393e-01	ci left: 5.173933e-04	ci right 6.055534e-04	k: 633	n:1130000
STAM2   1130000 perm   635 sec   (1779 perm/sec)   p_kst 5.601770e-04   p_cons 7.940407e-01   p_joint 5.601770e-04

Joint ci ratio: 1.543061e-01	ci left: 5.221298e-04	ci right 6.102644e-04	k: 644	n:1140000
Cons ci ratio: 1.869901e-03	ci left: 7.932854e-01	ci right 7.947710e-01	k: 905193	n:1140000
KS ci ratio: 1.543061e-01	ci left: 5.221298e-04	ci right 6.102644e-04	k: 644	n:1140000
STAM2   1140000 perm   644 sec   (1769 perm/sec)   p_kst 5.649123e-04   p_cons 7.940289e-01   p_joint 5.649123e-04

Joint ci ratio: 1.535934e-01	ci left: 5.226060e-04	ci right 6.103760e-04	k: 650	n:1150000
Cons ci ratio: 1.861715e-03	ci left: 7.932954e-01	ci right 7.947745e-01	k: 913141	n:1150000
KS ci ratio: 1.535934e-01	ci left: 5.226060e-04	ci right 6.103760e-04	k: 650	n:1150000
STAM2   1150000 perm   654 sec   (1759 perm/sec)   p_kst 5.652174e-04   p_cons 7.940357e-01   p_joint 5.652174e-04

Joint ci ratio: 1.527741e-01	ci left: 5.239040e-04	ci right 6.113797e-04	k: 657	n:1160000
Cons ci ratio: 1.853748e-03	ci left: 7.932853e-01	ci right 7.947581e-01	k: 921066	n:1160000
KS ci ratio: 1.527741e-01	ci left: 5.239040e-04	ci right 6.113797e-04	k: 657	n:1160000
STAM2   1160000 perm   663 sec   (1749 perm/sec)   p_kst 5.663793e-04   p_cons 7.940224e-01   p_joint 5.663793e-04

Joint ci ratio: 1.520823e-01	ci left: 5.243588e-04	ci right 6.114778e-04	k: 663	n:1170000
Cons ci ratio: 1.845719e-03	ci left: 7.933045e-01	ci right 7.947709e-01	k: 929025	n:1170000
KS ci ratio: 1.520823e-01	ci left: 5.243588e-04	ci right 6.114778e-04	k: 663	n:1170000
STAM2   1170000 perm   673 sec   (1739 perm/sec)   p_kst 5.666667e-04   p_cons 7.940385e-01   p_joint 5.666667e-04

Joint ci ratio: 1.512868e-01	ci left: 5.256221e-04	ci right 6.124530e-04	k: 670	n:1180000
Cons ci ratio: 1.837721e-03	ci left: 7.933362e-01	ci right 7.947963e-01	k: 936999	n:1180000
KS ci ratio: 1.512868e-01	ci left: 5.256221e-04	ci right 6.124530e-04	k: 670	n:1180000
STAM2   1180000 perm   683 sec   (1729 perm/sec)   p_kst 5.677966e-04   p_cons 7.940669e-01   p_joint 5.677966e-04

Joint ci ratio: 1.506149e-01	ci left: 5.260567e-04	ci right 6.125386e-04	k: 676	n:1190000
Cons ci ratio: 1.829549e-03	ci left: 7.934170e-01	ci right 7.948707e-01	k: 945032	n:1190000
KS ci ratio: 1.506149e-01	ci left: 5.260567e-04	ci right 6.125386e-04	k: 676	n:1190000
STAM2   1190000 perm   692 sec   (1719 perm/sec)   p_kst 5.680672e-04   p_cons 7.941445e-01   p_joint 5.680672e-04

Joint ci ratio: 1.503932e-01	ci left: 5.232768e-04	ci right 6.091636e-04	k: 678	n:1200000
Cons ci ratio: 1.821578e-03	ci left: 7.934797e-01	ci right 7.949272e-01	k: 953045	n:1200000
KS ci ratio: 1.503932e-01	ci left: 5.232768e-04	ci right 6.091636e-04	k: 678	n:1200000
STAM2   1200000 perm   702 sec   (1709 perm/sec)   p_kst 5.650000e-04   p_cons 7.942042e-01   p_joint 5.650000e-04

Joint ci ratio: 1.500622e-01	ci left: 5.213383e-04	ci right 6.067017e-04	k: 681	n:1210000
Cons ci ratio: 1.814187e-03	ci left: 7.934554e-01	ci right 7.948969e-01	k: 960954	n:1210000
KS ci ratio: 1.500622e-01	ci left: 5.213383e-04	ci right 6.067017e-04	k: 681	n:1210000
STAM2   1210000 perm   712 sec   (1699 perm/sec)   p_kst 5.628099e-04   p_cons 7.941769e-01   p_joint 5.628099e-04

Joint ci ratio: 1.495152e-01	ci left: 5.210097e-04	ci right 6.059806e-04	k: 686	n:1220000
Cons ci ratio: 1.806486e-03	ci left: 7.935037e-01	ci right 7.949392e-01	k: 968951	n:1220000
KS ci ratio: 1.495152e-01	ci left: 5.210097e-04	ci right 6.059806e-04	k: 686	n:1220000
STAM2   1220000 perm   723 sec   (1688 perm/sec)   p_kst 5.622951e-04   p_cons 7.942221e-01   p_joint 5.622951e-04

Joint ci ratio: 1.486520e-01	ci left: 5.230354e-04	ci right 6.078004e-04	k: 694	n:1230000
Cons ci ratio: 1.799102e-03	ci left: 7.935113e-01	ci right 7.949410e-01	k: 976899	n:1230000
KS ci ratio: 1.486520e-01	ci left: 5.230354e-04	ci right 6.078004e-04	k: 694	n:1230000
STAM2   1230000 perm   733 sec   (1678 perm/sec)   p_kst 5.642276e-04   p_cons 7.942268e-01   p_joint 5.642276e-04

Joint ci ratio: 1.476986e-01	ci left: 5.258064e-04	ci right 6.104257e-04	k: 703	n:1240000
Cons ci ratio: 1.791856e-03	ci left: 7.935099e-01	ci right 7.949338e-01	k: 984836	n:1240000
KS ci ratio: 1.476986e-01	ci left: 5.258064e-04	ci right 6.104257e-04	k: 703	n:1240000
STAM2   1240000 perm   743 sec   (1668 perm/sec)   p_kst 5.669355e-04   p_cons 7.942226e-01   p_joint 5.669355e-04

Joint ci ratio: 1.467632e-01	ci left: 5.285348e-04	ci right 6.130072e-04	k: 712	n:1250000
Cons ci ratio: 1.785138e-03	ci left: 7.934277e-01	ci right 7.948461e-01	k: 992672	n:1250000
KS ci ratio: 1.467632e-01	ci left: 5.285348e-04	ci right 6.130072e-04	k: 712	n:1250000
STAM2   1250000 perm   754 sec   (1659 perm/sec)   p_kst 5.696000e-04   p_cons 7.941376e-01   p_joint 5.696000e-04

Joint ci ratio: 1.465580e-01	ci left: 5.258690e-04	ci right 6.097877e-04	k: 714	n:1260000
Cons ci ratio: 1.777787e-03	ci left: 7.934771e-01	ci right 7.948898e-01	k: 1000672	n:1260000
KS ci ratio: 1.465580e-01	ci left: 5.258690e-04	ci right 6.097877e-04	k: 714	n:1260000
STAM2   1260000 perm   764 sec   (1649 perm/sec)   p_kst 5.666667e-04   p_cons 7.941841e-01   p_joint 5.666667e-04

Joint ci ratio: 1.457448e-01	ci left: 5.277972e-04	ci right 6.115156e-04	k: 722	n:1270000
Cons ci ratio: 1.770513e-03	ci left: 7.935281e-01	ci right 7.949351e-01	k: 1008675	n:1270000
KS ci ratio: 1.457448e-01	ci left: 5.277972e-04	ci right 6.115156e-04	k: 722	n:1270000
STAM2   1270000 perm   774 sec   (1640 perm/sec)   p_kst 5.685039e-04   p_cons 7.942323e-01   p_joint 5.685039e-04

Joint ci ratio: 1.453434e-01	ci left: 5.266850e-04	ci right 6.099768e-04	k: 726	n:1280000
Cons ci ratio: 1.763446e-03	ci left: 7.935565e-01	ci right 7.949578e-01	k: 1016650	n:1280000
KS ci ratio: 1.453434e-01	ci left: 5.266850e-04	ci right 6.099768e-04	k: 726	n:1280000
STAM2   1280000 perm   785 sec   (1631 perm/sec)   p_kst 5.671875e-04   p_cons 7.942578e-01   p_joint 5.671875e-04

Joint ci ratio: 1.451441e-01	ci left: 5.240962e-04	ci right 6.068551e-04	k: 728	n:1290000
Cons ci ratio: 1.756479e-03	ci left: 7.935812e-01	ci right 7.949771e-01	k: 1024621	n:1290000
KS ci ratio: 1.451441e-01	ci left: 5.240962e-04	ci right 6.068551e-04	k: 728	n:1290000
STAM2   1290000 perm   796 sec   (1622 perm/sec)   p_kst 5.643411e-04   p_cons 7.942798e-01   p_joint 5.643411e-04

Joint ci ratio: 1.447476e-01	ci left: 5.230300e-04	ci right 6.053754e-04	k: 732	n:1300000
Cons ci ratio: 1.749508e-03	ci left: 7.936218e-01	ci right 7.950122e-01	k: 1032613	n:1300000
KS ci ratio: 1.447476e-01	ci left: 5.230300e-04	ci right 6.053754e-04	k: 732	n:1300000
STAM2   1300000 perm   806 sec   (1613 perm/sec)   p_kst 5.630769e-04   p_cons 7.943177e-01   p_joint 5.630769e-04

Joint ci ratio: 1.441588e-01	ci left: 5.234520e-04	ci right 6.054998e-04	k: 738	n:1310000
Cons ci ratio: 1.742785e-03	ci left: 7.936305e-01	ci right 7.950155e-01	k: 1040564	n:1310000
KS ci ratio: 1.441588e-01	ci left: 5.234520e-04	ci right 6.054998e-04	k: 738	n:1310000
STAM2   1310000 perm   817 sec   (1604 perm/sec)   p_kst 5.633588e-04   p_cons 7.943237e-01   p_joint 5.633588e-04

Joint ci ratio: 1.433847e-01	ci left: 5.253291e-04	ci right 6.071911e-04	k: 746	n:1320000
Cons ci ratio: 1.736446e-03	ci left: 7.935814e-01	ci right 7.949613e-01	k: 1048439	n:1320000
KS ci ratio: 1.433847e-01	ci left: 5.253291e-04	ci right 6.071911e-04	k: 746	n:1320000
STAM2   1320000 perm   827 sec   (1595 perm/sec)   p_kst 5.651515e-04   p_cons 7.942720e-01   p_joint 5.651515e-04

Joint ci ratio: 1.429072e-01	ci left: 5.250040e-04	ci right 6.065197e-04	k: 751	n:1330000
Cons ci ratio: 1.730024e-03	ci left: 7.935616e-01	ci right 7.949364e-01	k: 1056352	n:1330000
KS ci ratio: 1.429072e-01	ci left: 5.250040e-04	ci right 6.065197e-04	k: 751	n:1330000
STAM2   1330000 perm   838 sec   (1586 perm/sec)   p_kst 5.646617e-04   p_cons 7.942496e-01   p_joint 5.646617e-04

Joint ci ratio: 1.423405e-01	ci left: 5.254039e-04	ci right 6.066307e-04	k: 757	n:1340000
Cons ci ratio: 1.723539e-03	ci left: 7.935675e-01	ci right 7.949372e-01	k: 1064299	n:1340000
KS ci ratio: 1.423405e-01	ci left: 5.254039e-04	ci right 6.066307e-04	k: 757	n:1340000
STAM2   1340000 perm   849 sec   (1578 perm/sec)   p_kst 5.649254e-04   p_cons 7.942530e-01   p_joint 5.649254e-04

Joint ci ratio: 1.421533e-01	ci left: 5.229407e-04	ci right 6.036714e-04	k: 759	n:1350000
Cons ci ratio: 1.717266e-03	ci left: 7.935467e-01	ci right 7.949113e-01	k: 1072210	n:1350000
KS ci ratio: 1.421533e-01	ci left: 5.229407e-04	ci right 6.036714e-04	k: 759	n:1350000
STAM2   1350000 perm   860 sec   (1570 perm/sec)   p_kst 5.622222e-04   p_cons 7.942296e-01   p_joint 5.622222e-04

Joint ci ratio: 1.415030e-01	ci left: 5.240600e-04	ci right 6.045622e-04	k: 766	n:1360000
Cons ci ratio: 1.711046e-03	ci left: 7.935291e-01	ci right 7.948888e-01	k: 1080125	n:1360000
KS ci ratio: 1.415030e-01	ci left: 5.240600e-04	ci right 6.045622e-04	k: 766	n:1360000
STAM2   1360000 perm   871 sec   (1562 perm/sec)   p_kst 5.632353e-04   p_cons 7.942096e-01   p_joint 5.632353e-04

Joint ci ratio: 1.406799e-01	ci left: 5.265723e-04	ci right 6.069504e-04	k: 775	n:1370000
Cons ci ratio: 1.704619e-03	ci left: 7.935644e-01	ci right 7.949190e-01	k: 1088112	n:1370000
KS ci ratio: 1.406799e-01	ci left: 5.265723e-04	ci right 6.069504e-04	k: 775	n:1370000
STAM2   1370000 perm   882 sec   (1553 perm/sec)   p_kst 5.656934e-04   p_cons 7.942423e-01   p_joint 5.656934e-04

Joint ci ratio: 1.404089e-01	ci left: 5.248540e-04	ci right 6.048025e-04	k: 778	n:1380000
Cons ci ratio: 1.698584e-03	ci left: 7.935376e-01	ci right 7.948873e-01	k: 1096014	n:1380000
KS ci ratio: 1.404089e-01	ci left: 5.248540e-04	ci right 6.048025e-04	k: 778	n:1380000
STAM2   1380000 perm   893 sec   (1545 perm/sec)   p_kst 5.637681e-04   p_cons 7.942130e-01   p_joint 5.637681e-04

Joint ci ratio: 1.394277e-01	ci left: 5.287148e-04	ci right 6.086419e-04	k: 789	n:1390000
Cons ci ratio: 1.692475e-03	ci left: 7.935377e-01	ci right 7.948826e-01	k: 1103953	n:1390000
KS ci ratio: 1.394277e-01	ci left: 5.287148e-04	ci right 6.086419e-04	k: 789	n:1390000
STAM2   1390000 perm   904 sec   (1537 perm/sec)   p_kst 5.676259e-04   p_cons 7.942108e-01   p_joint 5.676259e-04

Joint ci ratio: 1.392517e-01	ci left: 5.263170e-04	ci right 6.057728e-04	k: 791	n:1400000
Cons ci ratio: 1.686597e-03	ci left: 7.935057e-01	ci right 7.948459e-01	k: 1111847	n:1400000
KS ci ratio: 1.392517e-01	ci left: 5.263170e-04	ci right 6.057728e-04	k: 791	n:1400000
STAM2   1400000 perm   915 sec   (1529 perm/sec)   p_kst 5.650000e-04   p_cons 7.941764e-01   p_joint 5.650000e-04

Joint ci ratio: 1.389014e-01	ci left: 5.253224e-04	ci right 6.044121e-04	k: 795	n:1410000
Cons ci ratio: 1.680626e-03	ci left: 7.935040e-01	ci right 7.948394e-01	k: 1119783	n:1410000
KS ci ratio: 1.389014e-01	ci left: 5.253224e-04	ci right 6.044121e-04	k: 795	n:1410000
STAM2   1410000 perm   927 sec   (1522 perm/sec)   p_kst 5.638298e-04   p_cons 7.941723e-01   p_joint 5.638298e-04

Joint ci ratio: 1.381226e-01	ci left: 5.277413e-04	ci right 6.067131e-04	k: 804	n:1420000
Cons ci ratio: 1.674758e-03	ci left: 7.934946e-01	ci right 7.948253e-01	k: 1127708	n:1420000
KS ci ratio: 1.381226e-01	ci left: 5.277413e-04	ci right 6.067131e-04	k: 804	n:1420000
STAM2   1420000 perm   938 sec   (1514 perm/sec)   p_kst 5.661972e-04   p_cons 7.941606e-01   p_joint 5.661972e-04

Joint ci ratio: 1.371882e-01	ci left: 5.314783e-04	ci right 6.104274e-04	k: 815	n:1430000
Cons ci ratio: 1.668798e-03	ci left: 7.935154e-01	ci right 7.948414e-01	k: 1135676	n:1430000
KS ci ratio: 1.371882e-01	ci left: 5.314783e-04	ci right 6.104274e-04	k: 815	n:1430000
STAM2   1430000 perm   949 sec   (1506 perm/sec)   p_kst 5.699301e-04   p_cons 7.941790e-01   p_joint 5.699301e-04

Joint ci ratio: 1.366035e-01	ci left: 5.324821e-04	ci right 6.112158e-04	k: 822	n:1440000
Cons ci ratio: 1.663162e-03	ci left: 7.934845e-01	ci right 7.948060e-01	k: 1143570	n:1440000
KS ci ratio: 1.366035e-01	ci left: 5.324821e-04	ci right 6.112158e-04	k: 822	n:1440000
STAM2   1440000 perm   961 sec   (1498 perm/sec)   p_kst 5.708333e-04   p_cons 7.941458e-01   p_joint 5.708333e-04

Joint ci ratio: 1.361083e-01	ci left: 5.328066e-04	ci right 6.112795e-04	k: 828	n:1450000
Cons ci ratio: 1.657419e-03	ci left: 7.934865e-01	ci right 7.948034e-01	k: 1151511	n:1450000
KS ci ratio: 1.361083e-01	ci left: 5.328066e-04	ci right 6.112795e-04	k: 828	n:1450000
STAM2   1450000 perm   973 sec   (1491 perm/sec)   p_kst 5.710345e-04   p_cons 7.941455e-01   p_joint 5.710345e-04

Joint ci ratio: 1.358628e-01	ci left: 5.311421e-04	ci right 6.092173e-04	k: 831	n:1460000
Cons ci ratio: 1.651658e-03	ci left: 7.935035e-01	ci right 7.948159e-01	k: 1159474	n:1460000
KS ci ratio: 1.358628e-01	ci left: 5.311421e-04	ci right 6.092173e-04	k: 831	n:1460000
STAM2   1460000 perm   984 sec   (1483 perm/sec)   p_kst 5.691781e-04   p_cons 7.941603e-01   p_joint 5.691781e-04

Joint ci ratio: 1.353755e-01	ci left: 5.314721e-04	ci right 6.092930e-04	k: 837	n:1470000
Cons ci ratio: 1.645971e-03	ci left: 7.935176e-01	ci right 7.948254e-01	k: 1167433	n:1470000
KS ci ratio: 1.353755e-01	ci left: 5.314721e-04	ci right 6.092930e-04	k: 837	n:1470000
STAM2   1470000 perm   996 sec   (1476 perm/sec)   p_kst 5.693878e-04   p_cons 7.941721e-01   p_joint 5.693878e-04

Joint ci ratio: 1.348136e-01	ci left: 5.324509e-04	ci right 6.100656e-04	k: 844	n:1480000
Cons ci ratio: 1.640353e-03	ci left: 7.935295e-01	ci right 7.948329e-01	k: 1175389	n:1480000
KS ci ratio: 1.348136e-01	ci left: 5.324509e-04	ci right 6.100656e-04	k: 844	n:1480000
STAM2   1480000 perm   1008 sec   (1469 perm/sec)   p_kst 5.702703e-04   p_cons 7.941818e-01   p_joint 5.702703e-04

Joint ci ratio: 1.344165e-01	ci left: 5.321201e-04	ci right 6.094399e-04	k: 849	n:1490000
Cons ci ratio: 1.634791e-03	ci left: 7.935412e-01	ci right 7.948402e-01	k: 1183345	n:1490000
KS ci ratio: 1.344165e-01	ci left: 5.321201e-04	ci right 6.094399e-04	k: 849	n:1490000
STAM2   1490000 perm   1020 sec   (1461 perm/sec)   p_kst 5.697987e-04   p_cons 7.941913e-01   p_joint 5.697987e-04

Joint ci ratio: 1.341014e-01	ci left: 5.311497e-04	ci right 6.081332e-04	k: 853	n:1500000
Cons ci ratio: 1.629439e-03	ci left: 7.935221e-01	ci right 7.948168e-01	k: 1191255	n:1500000
KS ci ratio: 1.341014e-01	ci left: 5.311497e-04	ci right 6.081332e-04	k: 853	n:1500000
STAM2   1500000 perm   1032 sec   (1454 perm/sec)   p_kst 5.686667e-04   p_cons 7.941700e-01   p_joint 5.686667e-04

Joint ci ratio: 1.341017e-01	ci left: 5.276321e-04	ci right 6.041059e-04	k: 853	n:1510000
Cons ci ratio: 1.624221e-03	ci left: 7.934866e-01	ci right 7.947771e-01	k: 1199140	n:1510000
KS ci ratio: 1.341017e-01	ci left: 5.276321e-04	ci right 6.041059e-04	k: 853	n:1510000
STAM2   1510000 perm   1044 sec   (1447 perm/sec)   p_kst 5.649007e-04   p_cons 7.941325e-01   p_joint 5.649007e-04

Joint ci ratio: 1.335554e-01	ci left: 5.286120e-04	ci right 6.048908e-04	k: 860	n:1520000
Cons ci ratio: 1.618919e-03	ci left: 7.934787e-01	ci right 7.947649e-01	k: 1207066	n:1520000
KS ci ratio: 1.335554e-01	ci left: 5.286120e-04	ci right 6.048908e-04	k: 860	n:1520000
STAM2   1520000 perm   1056 sec   (1440 perm/sec)   p_kst 5.657895e-04   p_cons 7.941224e-01   p_joint 5.657895e-04

Joint ci ratio: 1.333234e-01	ci left: 5.270523e-04	ci right 6.029635e-04	k: 863	n:1530000
Cons ci ratio: 1.613653e-03	ci left: 7.934741e-01	ci right 7.947562e-01	k: 1214997	n:1530000
KS ci ratio: 1.333234e-01	ci left: 5.270523e-04	ci right 6.029635e-04	k: 863	n:1530000
STAM2   1530000 perm   1068 sec   (1433 perm/sec)   p_kst 5.640523e-04   p_cons 7.941157e-01   p_joint 5.640523e-04

Joint ci ratio: 1.330159e-01	ci left: 5.261407e-04	ci right 6.017321e-04	k: 867	n:1540000
Cons ci ratio: 1.608186e-03	ci left: 7.935209e-01	ci right 7.947987e-01	k: 1223007	n:1540000
KS ci ratio: 1.330159e-01	ci left: 5.261407e-04	ci right 6.017321e-04	k: 867	n:1540000
STAM2   1540000 perm   1080 sec   (1426 perm/sec)   p_kst 5.629870e-04   p_cons 7.941604e-01   p_joint 5.629870e-04

Joint ci ratio: 1.327868e-01	ci left: 5.246174e-04	ci right 5.998498e-04	k: 870	n:1550000
Cons ci ratio: 1.603169e-03	ci left: 7.934865e-01	ci right 7.947602e-01	k: 1230892	n:1550000
KS ci ratio: 1.327868e-01	ci left: 5.246174e-04	ci right 5.998498e-04	k: 870	n:1550000
STAM2   1550000 perm   1092 sec   (1419 perm/sec)   p_kst 5.612903e-04   p_cons 7.941239e-01   p_joint 5.612903e-04

Joint ci ratio: 1.322563e-01	ci left: 5.255929e-04	ci right 6.006404e-04	k: 877	n:1560000
Cons ci ratio: 1.597888e-03	ci left: 7.935159e-01	ci right 7.947855e-01	k: 1238876	n:1560000
KS ci ratio: 1.322563e-01	ci left: 5.255929e-04	ci right 6.006404e-04	k: 877	n:1560000
STAM2   1560000 perm   1105 sec   (1412 perm/sec)   p_kst 5.621795e-04   p_cons 7.941513e-01   p_joint 5.621795e-04

Joint ci ratio: 1.321061e-01	ci left: 5.234769e-04	ci right 5.981307e-04	k: 879	n:1570000
Cons ci ratio: 1.592867e-03	ci left: 7.935023e-01	ci right 7.947679e-01	k: 1246793	n:1570000
KS ci ratio: 1.321061e-01	ci left: 5.234769e-04	ci right 5.981307e-04	k: 879	n:1570000
STAM2   1570000 perm   1118 sec   (1404 perm/sec)   p_kst 5.598726e-04   p_cons 7.941357e-01   p_joint 5.598726e-04

Joint ci ratio: 1.317324e-01	ci left: 5.232238e-04	ci right 5.976140e-04	k: 884	n:1580000
Cons ci ratio: 1.588056e-03	ci left: 7.934553e-01	ci right 7.947170e-01	k: 1254657	n:1580000
KS ci ratio: 1.317324e-01	ci left: 5.232238e-04	ci right 5.976140e-04	k: 884	n:1580000
STAM2   1580000 perm   1130 sec   (1398 perm/sec)   p_kst 5.594937e-04   p_cons 7.940867e-01   p_joint 5.594937e-04

Joint ci ratio: 1.311409e-01	ci left: 5.247992e-04	ci right 5.990522e-04	k: 892	n:1590000
Cons ci ratio: 1.583081e-03	ci left: 7.934517e-01	ci right 7.947094e-01	k: 1262589	n:1590000
KS ci ratio: 1.311409e-01	ci left: 5.247992e-04	ci right 5.990522e-04	k: 892	n:1590000
STAM2   1590000 perm   1143 sec   (1391 perm/sec)   p_kst 5.610063e-04   p_cons 7.940811e-01   p_joint 5.610063e-04

Joint ci ratio: 1.303404e-01	ci left: 5.281694e-04	ci right 6.024078e-04	k: 903	n:1600000
Cons ci ratio: 1.578032e-03	ci left: 7.934732e-01	ci right 7.947270e-01	k: 1270561	n:1600000
KS ci ratio: 1.303404e-01	ci left: 5.281694e-04	ci right 6.024078e-04	k: 903	n:1600000
STAM2   1600000 perm   1155 sec   (1385 perm/sec)   p_kst 5.643750e-04   p_cons 7.941006e-01   p_joint 5.643750e-04

Joint ci ratio: 1.298386e-01	ci left: 5.290952e-04	ci right 6.031553e-04	k: 910	n:1610000
Cons ci ratio: 1.573043e-03	ci left: 7.934920e-01	ci right 7.947418e-01	k: 1278529	n:1610000
KS ci ratio: 1.298386e-01	ci left: 5.290952e-04	ci right 6.031553e-04	k: 910	n:1610000
STAM2   1610000 perm   1168 sec   (1378 perm/sec)   p_kst 5.652174e-04   p_cons 7.941174e-01   p_joint 5.652174e-04

Joint ci ratio: 1.294838e-01	ci left: 5.288155e-04	ci right 6.026186e-04	k: 915	n:1620000
Cons ci ratio: 1.567974e-03	ci left: 7.935371e-01	ci right 7.947829e-01	k: 1286540	n:1620000
KS ci ratio: 1.294838e-01	ci left: 5.288155e-04	ci right 6.026186e-04	k: 915	n:1620000
STAM2   1620000 perm   1181 sec   (1372 perm/sec)   p_kst 5.648148e-04   p_cons 7.941605e-01   p_joint 5.648148e-04

Joint ci ratio: 1.291319e-01	ci left: 5.285394e-04	ci right 6.020883e-04	k: 920	n:1630000
Cons ci ratio: 1.563091e-03	ci left: 7.935527e-01	ci right 7.947947e-01	k: 1294504	n:1630000
KS ci ratio: 1.291319e-01	ci left: 5.285394e-04	ci right 6.020883e-04	k: 920	n:1630000
STAM2   1630000 perm   1194 sec   (1366 perm/sec)   p_kst 5.644172e-04   p_cons 7.941742e-01   p_joint 5.644172e-04

Joint ci ratio: 1.289222e-01	ci left: 5.270868e-04	ci right 6.003053e-04	k: 923	n:1640000
Cons ci ratio: 1.558350e-03	ci left: 7.935481e-01	ci right 7.947863e-01	k: 1302435	n:1640000
KS ci ratio: 1.289222e-01	ci left: 5.270868e-04	ci right 6.003053e-04	k: 923	n:1640000
STAM2   1640000 perm   1207 sec   (1359 perm/sec)   p_kst 5.628049e-04   p_cons 7.941677e-01   p_joint 5.628049e-04

Joint ci ratio: 1.286441e-01	ci left: 5.262385e-04	ci right 5.991694e-04	k: 927	n:1650000
Cons ci ratio: 1.553740e-03	ci left: 7.935247e-01	ci right 7.947591e-01	k: 1310335	n:1650000
KS ci ratio: 1.286441e-01	ci left: 5.262385e-04	ci right 5.991694e-04	k: 927	n:1650000
STAM2   1650000 perm   1220 sec   (1353 perm/sec)   p_kst 5.618182e-04   p_cons 7.941424e-01   p_joint 5.618182e-04

Joint ci ratio: 1.285750e-01	ci left: 5.236514e-04	ci right 5.961818e-04	k: 928	n:1660000
Cons ci ratio: 1.549126e-03	ci left: 7.935112e-01	ci right 7.947420e-01	k: 1318251	n:1660000
KS ci ratio: 1.285750e-01	ci left: 5.236514e-04	ci right 5.961818e-04	k: 928	n:1660000
STAM2   1660000 perm   1233 sec   (1347 perm/sec)   p_kst 5.590361e-04   p_cons 7.941271e-01   p_joint 5.590361e-04

Joint ci ratio: 1.282991e-01	ci left: 5.228340e-04	ci right 5.950840e-04	k: 932	n:1670000
Cons ci ratio: 1.544298e-03	ci left: 7.935519e-01	ci right 7.947789e-01	k: 1326257	n:1670000
KS ci ratio: 1.282991e-01	ci left: 5.228340e-04	ci right 5.950840e-04	k: 932	n:1670000
STAM2   1670000 perm   1246 sec   (1340 perm/sec)   p_kst 5.580838e-04   p_cons 7.941659e-01   p_joint 5.580838e-04

Joint ci ratio: 1.280251e-01	ci left: 5.220265e-04	ci right 5.939991e-04	k: 936	n:1680000
Cons ci ratio: 1.539694e-03	ci left: 7.935539e-01	ci right 7.947772e-01	k: 1334199	n:1680000
KS ci ratio: 1.280251e-01	ci left: 5.220265e-04	ci right 5.939991e-04	k: 936	n:1680000
STAM2   1680000 perm   1259 sec   (1334 perm/sec)   p_kst 5.571429e-04   p_cons 7.941661e-01   p_joint 5.571429e-04

Joint ci ratio: 1.274145e-01	ci left: 5.240929e-04	ci right 5.959798e-04	k: 945	n:1690000
Cons ci ratio: 1.535122e-03	ci left: 7.935577e-01	ci right 7.947774e-01	k: 1342144	n:1690000
KS ci ratio: 1.274145e-01	ci left: 5.240929e-04	ci right 5.959798e-04	k: 945	n:1690000
STAM2   1690000 perm   1273 sec   (1328 perm/sec)   p_kst 5.591716e-04   p_cons 7.941680e-01   p_joint 5.591716e-04

Joint ci ratio: 1.272130e-01	ci left: 5.227185e-04	ci right 5.942949e-04	k: 948	n:1700000
Cons ci ratio: 1.530479e-03	ci left: 7.935856e-01	ci right 7.948016e-01	k: 1350130	n:1700000
KS ci ratio: 1.272130e-01	ci left: 5.227185e-04	ci right 5.942949e-04	k: 948	n:1700000
STAM2   1700000 perm   1286 sec   (1322 perm/sec)   p_kst 5.576471e-04   p_cons 7.941941e-01   p_joint 5.576471e-04

Joint ci ratio: 1.268792e-01	ci left: 5.224927e-04	ci right 5.938363e-04	k: 953	n:1710000
Cons ci ratio: 1.525907e-03	ci left: 7.936067e-01	ci right 7.948192e-01	k: 1358105	n:1710000
KS ci ratio: 1.268792e-01	ci left: 5.224927e-04	ci right 5.938363e-04	k: 953	n:1710000
STAM2   1710000 perm   1299 sec   (1316 perm/sec)   p_kst 5.573099e-04   p_cons 7.942135e-01   p_joint 5.573099e-04

Joint ci ratio: 1.266803e-01	ci left: 5.211438e-04	ci right 5.921833e-04	k: 956	n:1720000
Cons ci ratio: 1.521408e-03	ci left: 7.936206e-01	ci right 7.948295e-01	k: 1366068	n:1720000
KS ci ratio: 1.266803e-01	ci left: 5.211438e-04	ci right 5.921833e-04	k: 956	n:1720000
STAM2   1720000 perm   1313 sec   (1310 perm/sec)   p_kst 5.558140e-04   p_cons 7.942256e-01   p_joint 5.558140e-04

Joint ci ratio: 1.260887e-01	ci left: 5.231693e-04	ci right 5.941269e-04	k: 965	n:1730000
Cons ci ratio: 1.516836e-03	ci left: 7.936587e-01	ci right 7.948640e-01	k: 1374073	n:1730000
KS ci ratio: 1.260887e-01	ci left: 5.231693e-04	ci right 5.941269e-04	k: 965	n:1730000
STAM2   1730000 perm   1326 sec   (1305 perm/sec)   p_kst 5.578035e-04   p_cons 7.942618e-01   p_joint 5.578035e-04

Joint ci ratio: 1.256989e-01	ci left: 5.235022e-04	ci right 5.942692e-04	k: 971	n:1740000
Cons ci ratio: 1.512566e-03	ci left: 7.936399e-01	ci right 7.948418e-01	k: 1381980	n:1740000
KS ci ratio: 1.256989e-01	ci left: 5.235022e-04	ci right 5.942692e-04	k: 971	n:1740000
STAM2   1740000 perm   1340 sec   (1299 perm/sec)   p_kst 5.580460e-04   p_cons 7.942414e-01   p_joint 5.580460e-04

Joint ci ratio: 1.251847e-01	ci left: 5.249388e-04	ci right 5.955882e-04	k: 979	n:1750000
Cons ci ratio: 1.508236e-03	ci left: 7.936420e-01	ci right 7.948405e-01	k: 1389923	n:1750000
KS ci ratio: 1.251847e-01	ci left: 5.249388e-04	ci right 5.955882e-04	k: 979	n:1750000
STAM2   1750000 perm   1353 sec   (1293 perm/sec)   p_kst 5.594286e-04   p_cons 7.942417e-01   p_joint 5.594286e-04

Joint ci ratio: 1.247399e-01	ci left: 5.258092e-04	ci right 5.963057e-04	k: 986	n:1760000
Cons ci ratio: 1.503941e-03	ci left: 7.936446e-01	ci right 7.948396e-01	k: 1397867	n:1760000
KS ci ratio: 1.247399e-01	ci left: 5.258092e-04	ci right 5.963057e-04	k: 986	n:1760000
STAM2   1760000 perm   1367 sec   (1287 perm/sec)   p_kst 5.602273e-04   p_cons 7.942426e-01   p_joint 5.602273e-04

Joint ci ratio: 1.244252e-01	ci left: 5.255753e-04	ci right 5.958496e-04	k: 991	n:1770000
Cons ci ratio: 1.499802e-03	ci left: 7.936212e-01	ci right 7.948129e-01	k: 1405765	n:1770000
KS ci ratio: 1.244252e-01	ci left: 5.255753e-04	ci right 5.958496e-04	k: 991	n:1770000
STAM2   1770000 perm   1381 sec   (1282 perm/sec)   p_kst 5.598870e-04   p_cons 7.942175e-01   p_joint 5.598870e-04

Joint ci ratio: 1.241752e-01	ci left: 5.247999e-04	ci right 5.948191e-04	k: 995	n:1780000
Cons ci ratio: 1.495635e-03	ci left: 7.936115e-01	ci right 7.947999e-01	k: 1413687	n:1780000
KS ci ratio: 1.241752e-01	ci left: 5.247999e-04	ci right 5.948191e-04	k: 995	n:1780000
STAM2   1780000 perm   1395 sec   (1276 perm/sec)   p_kst 5.589888e-04   p_cons 7.942062e-01   p_joint 5.589888e-04

Joint ci ratio: 1.240508e-01	ci left: 5.229507e-04	ci right 5.926482e-04	k: 997	n:1790000
Cons ci ratio: 1.491398e-03	ci left: 7.936249e-01	ci right 7.948099e-01	k: 1421650	n:1790000
KS ci ratio: 1.240508e-01	ci left: 5.229507e-04	ci right 5.926482e-04	k: 997	n:1790000
STAM2   1790000 perm   1409 sec   (1271 perm/sec)   p_kst 5.569832e-04   p_cons 7.942179e-01   p_joint 5.569832e-04

Joint ci ratio: 1.236796e-01	ci left: 5.232755e-04	ci right 5.927922e-04	k: 1003	n:1800000
Cons ci ratio: 1.487192e-03	ci left: 7.936392e-01	ci right 7.948209e-01	k: 1429615	n:1800000
KS ci ratio: 1.236796e-01	ci left: 5.232755e-04	ci right 5.927922e-04	k: 1003	n:1800000
STAM2   1800000 perm   1423 sec   (1265 perm/sec)   p_kst 5.572222e-04   p_cons 7.942306e-01   p_joint 5.572222e-04

Joint ci ratio: 1.233116e-01	ci left: 5.235970e-04	ci right 5.929344e-04	k: 1009	n:1810000
Cons ci ratio: 1.483194e-03	ci left: 7.936153e-01	ci right 7.947937e-01	k: 1437511	n:1810000
KS ci ratio: 1.233116e-01	ci left: 5.235970e-04	ci right 5.929344e-04	k: 1009	n:1810000
STAM2   1810000 perm   1436 sec   (1260 perm/sec)   p_kst 5.574586e-04   p_cons 7.942050e-01   p_joint 5.574586e-04

Joint ci ratio: 1.230076e-01	ci left: 5.233827e-04	ci right 5.925084e-04	k: 1014	n:1820000
Cons ci ratio: 1.479104e-03	ci left: 7.936191e-01	ci right 7.947943e-01	k: 1445457	n:1820000
KS ci ratio: 1.230076e-01	ci left: 5.233827e-04	ci right 5.925084e-04	k: 1014	n:1820000
STAM2   1820000 perm   1450 sec   (1255 perm/sec)   p_kst 5.571429e-04   p_cons 7.942071e-01   p_joint 5.571429e-04

Joint ci ratio: 1.226456e-01	ci left: 5.237006e-04	ci right 5.926500e-04	k: 1020	n:1830000
Cons ci ratio: 1.475149e-03	ci left: 7.936004e-01	ci right 7.947725e-01	k: 1453362	n:1830000
KS ci ratio: 1.226456e-01	ci left: 5.237006e-04	ci right 5.926500e-04	k: 1020	n:1830000
STAM2   1830000 perm   1465 sec   (1249 perm/sec)   p_kst 5.573770e-04   p_cons 7.941869e-01   p_joint 5.573770e-04

Joint ci ratio: 1.222868e-01	ci left: 5.240154e-04	ci right 5.927898e-04	k: 1026	n:1840000
Cons ci ratio: 1.471036e-03	ci left: 7.936238e-01	ci right 7.947926e-01	k: 1461344	n:1840000
KS ci ratio: 1.222868e-01	ci left: 5.240154e-04	ci right 5.927898e-04	k: 1026	n:1840000
STAM2   1840000 perm   1479 sec   (1244 perm/sec)   p_kst 5.576087e-04   p_cons 7.942087e-01   p_joint 5.576087e-04

Joint ci ratio: 1.219311e-01	ci left: 5.243271e-04	ci right 5.929278e-04	k: 1032	n:1850000
Cons ci ratio: 1.467043e-03	ci left: 7.936281e-01	ci right 7.947937e-01	k: 1469291	n:1850000
KS ci ratio: 1.219311e-01	ci left: 5.243271e-04	ci right 5.929278e-04	k: 1032	n:1850000
STAM2   1850000 perm   1493 sec   (1239 perm/sec)   p_kst 5.578378e-04   p_cons 7.942114e-01   p_joint 5.578378e-04

Joint ci ratio: 1.215200e-01	ci left: 5.251570e-04	ci right 5.936179e-04	k: 1039	n:1860000
Cons ci ratio: 1.462982e-03	ci left: 7.936549e-01	ci right 7.948173e-01	k: 1477280	n:1860000
KS ci ratio: 1.215200e-01	ci left: 5.251570e-04	ci right 5.936179e-04	k: 1039	n:1860000
STAM2   1860000 perm   1507 sec   (1234 perm/sec)   p_kst 5.586022e-04   p_cons 7.942366e-01   p_joint 5.586022e-04

Joint ci ratio: 1.211710e-01	ci left: 5.254598e-04	ci right 5.937494e-04	k: 1045	n:1870000
Cons ci ratio: 1.458929e-03	ci left: 7.936867e-01	ci right 7.948460e-01	k: 1485279	n:1870000
KS ci ratio: 1.211710e-01	ci left: 5.254598e-04	ci right 5.937494e-04	k: 1045	n:1870000
STAM2   1870000 perm   1522 sec   (1229 perm/sec)   p_kst 5.588235e-04   p_cons 7.942668e-01   p_joint 5.588235e-04

Joint ci ratio: 1.209977e-01	ci left: 5.242122e-04	ci right 5.922352e-04	k: 1048	n:1880000
Cons ci ratio: 1.454932e-03	ci left: 7.937135e-01	ci right 7.948696e-01	k: 1493269	n:1880000
KS ci ratio: 1.209977e-01	ci left: 5.242122e-04	ci right 5.922352e-04	k: 1048	n:1880000
STAM2   1880000 perm   1536 sec   (1224 perm/sec)   p_kst 5.574468e-04   p_cons 7.942920e-01   p_joint 5.574468e-04

Joint ci ratio: 1.206531e-01	ci left: 5.245173e-04	ci right 5.923722e-04	k: 1054	n:1890000
Cons ci ratio: 1.451200e-03	ci left: 7.936875e-01	ci right 7.948407e-01	k: 1501160	n:1890000
KS ci ratio: 1.206531e-01	ci left: 5.245173e-04	ci right 5.923722e-04	k: 1054	n:1890000
STAM2   1890000 perm   1551 sec   (1218 perm/sec)   p_kst 5.576720e-04   p_cons 7.942646e-01   p_joint 5.576720e-04

Joint ci ratio: 1.203682e-01	ci left: 5.243089e-04	ci right 5.919653e-04	k: 1059	n:1900000
Cons ci ratio: 1.447419e-03	ci left: 7.936792e-01	ci right 7.948294e-01	k: 1509084	n:1900000
KS ci ratio: 1.203682e-01	ci left: 5.243089e-04	ci right 5.919653e-04	k: 1059	n:1900000
STAM2   1900000 perm   1566 sec   (1213 perm/sec)   p_kst 5.573684e-04   p_cons 7.942547e-01   p_joint 5.573684e-04

Joint ci ratio: 1.200854e-01	ci left: 5.241029e-04	ci right 5.915625e-04	k: 1064	n:1910000
Cons ci ratio: 1.443659e-03	ci left: 7.936731e-01	ci right 7.948202e-01	k: 1517012	n:1910000
KS ci ratio: 1.200854e-01	ci left: 5.241029e-04	ci right 5.915625e-04	k: 1064	n:1910000
STAM2   1910000 perm   1581 sec   (1208 perm/sec)   p_kst 5.570681e-04   p_cons 7.942471e-01   p_joint 5.570681e-04

Joint ci ratio: 1.197485e-01	ci left: 5.244045e-04	ci right 5.917002e-04	k: 1070	n:1920000
Cons ci ratio: 1.439868e-03	ci left: 7.936806e-01	ci right 7.948247e-01	k: 1524966	n:1920000
KS ci ratio: 1.197485e-01	ci left: 5.244045e-04	ci right 5.917002e-04	k: 1070	n:1920000
STAM2   1920000 perm   1596 sec   (1203 perm/sec)   p_kst 5.572917e-04   p_cons 7.942531e-01   p_joint 5.572917e-04

Joint ci ratio: 1.194145e-01	ci left: 5.247032e-04	ci right 5.918361e-04	k: 1076	n:1930000
Cons ci ratio: 1.436175e-03	ci left: 7.936725e-01	ci right 7.948137e-01	k: 1532890	n:1930000
KS ci ratio: 1.194145e-01	ci left: 5.247032e-04	ci right 5.918361e-04	k: 1076	n:1930000
STAM2   1930000 perm   1610 sec   (1198 perm/sec)   p_kst 5.575130e-04   p_cons 7.942435e-01   p_joint 5.575130e-04

Joint ci ratio: 1.189733e-01	ci left: 5.259993e-04	ci right 5.930320e-04	k: 1084	n:1940000
Cons ci ratio: 1.432574e-03	ci left: 7.936500e-01	ci right 7.947883e-01	k: 1540786	n:1940000
KS ci ratio: 1.189733e-01	ci left: 5.259993e-04	ci right 5.930320e-04	k: 1084	n:1940000
STAM2   1940000 perm   1625 sec   (1194 perm/sec)   p_kst 5.587629e-04   p_cons 7.942196e-01   p_joint 5.587629e-04

Joint ci ratio: 1.184828e-01	ci left: 5.277802e-04	ci right 5.947432e-04	k: 1093	n:1950000
Cons ci ratio: 1.428963e-03	ci left: 7.936360e-01	ci right 7.947714e-01	k: 1548698	n:1950000
KS ci ratio: 1.184828e-01	ci left: 5.277802e-04	ci right 5.947432e-04	k: 1093	n:1950000
STAM2   1950000 perm   1640 sec   (1189 perm/sec)   p_kst 5.605128e-04   p_cons 7.942041e-01   p_joint 5.605128e-04

Joint ci ratio: 1.181055e-01	ci left: 5.285532e-04	ci right 5.953858e-04	k: 1100	n:1960000
Cons ci ratio: 1.425345e-03	ci left: 7.936303e-01	ci right 7.947628e-01	k: 1556626	n:1960000
KS ci ratio: 1.181055e-01	ci left: 5.285532e-04	ci right 5.953858e-04	k: 1100	n:1960000
STAM2   1960000 perm   1655 sec   (1184 perm/sec)   p_kst 5.612245e-04   p_cons 7.941969e-01   p_joint 5.612245e-04

Joint ci ratio: 1.178383e-01	ci left: 5.283334e-04	ci right 5.949765e-04	k: 1105	n:1970000
Cons ci ratio: 1.421731e-03	ci left: 7.936297e-01	ci right 7.947593e-01	k: 1564564	n:1970000
KS ci ratio: 1.178383e-01	ci left: 5.283334e-04	ci right 5.949765e-04	k: 1105	n:1970000
STAM2   1970000 perm   1671 sec   (1179 perm/sec)   p_kst 5.609137e-04   p_cons 7.941949e-01   p_joint 5.609137e-04

Joint ci ratio: 1.174143e-01	ci left: 5.295866e-04	ci right 5.961307e-04	k: 1113	n:1980000
Cons ci ratio: 1.418163e-03	ci left: 7.936251e-01	ci right 7.947518e-01	k: 1572494	n:1980000
KS ci ratio: 1.174143e-01	ci left: 5.295866e-04	ci right 5.961307e-04	k: 1113	n:1980000
STAM2   1980000 perm   1686 sec   (1174 perm/sec)   p_kst 5.621212e-04   p_cons 7.941889e-01   p_joint 5.621212e-04

Joint ci ratio: 1.173092e-01	ci left: 5.279008e-04	ci right 5.941697e-04	k: 1115	n:1990000
Cons ci ratio: 1.414577e-03	ci left: 7.936306e-01	ci right 7.947545e-01	k: 1580444	n:1990000
KS ci ratio: 1.173092e-01	ci left: 5.279008e-04	ci right 5.941697e-04	k: 1115	n:1990000
STAM2   1990000 perm   1701 sec   (1170 perm/sec)   p_kst 5.603015e-04   p_cons 7.941930e-01   p_joint 5.603015e-04

Joint ci ratio: 1.170473e-01	ci left: 5.276880e-04	ci right 5.937721e-04	k: 1120	n:2000000
Cons ci ratio: 1.411140e-03	ci left: 7.936080e-01	ci right 7.947292e-01	k: 1588338	n:2000000
KS ci ratio: 1.170473e-01	ci left: 5.276880e-04	ci right 5.937721e-04	k: 1120	n:2000000
STAM2   2000000 perm   1716 sec   (1165 perm/sec)   p_kst 5.600000e-04   p_cons 7.941690e-01   p_joint 5.600000e-04

Joint ci ratio: 1.166835e-01	ci left: 5.284435e-04	ci right 5.944023e-04	k: 1127	n:2010000
Cons ci ratio: 1.407586e-03	ci left: 7.936185e-01	ci right 7.947369e-01	k: 1596298	n:2010000
KS ci ratio: 1.166835e-01	ci left: 5.284435e-04	ci right 5.944023e-04	k: 1127	n:2010000
STAM2   2010000 perm   1732 sec   (1161 perm/sec)   p_kst 5.606965e-04   p_cons 7.941781e-01   p_joint 5.606965e-04

Joint ci ratio: 1.163231e-01	ci left: 5.291918e-04	ci right 5.950260e-04	k: 1134	n:2020000
Cons ci ratio: 1.404123e-03	ci left: 7.936141e-01	ci right 7.947297e-01	k: 1604228	n:2020000
KS ci ratio: 1.163231e-01	ci left: 5.291918e-04	ci right 5.950260e-04	k: 1134	n:2020000
STAM2   2020000 perm   1747 sec   (1156 perm/sec)   p_kst 5.613861e-04   p_cons 7.941723e-01   p_joint 5.613861e-04

Joint ci ratio: 1.158645e-01	ci left: 5.308898e-04	ci right 5.966570e-04	k: 1143	n:2030000
Cons ci ratio: 1.400575e-03	ci left: 7.936353e-01	ci right 7.947481e-01	k: 1612210	n:2030000
KS ci ratio: 1.158645e-01	ci left: 5.308898e-04	ci right 5.966570e-04	k: 1143	n:2030000
STAM2   2030000 perm   1763 sec   (1152 perm/sec)   p_kst 5.630542e-04   p_cons 7.941921e-01   p_joint 5.630542e-04

Joint ci ratio: 1.157130e-01	ci left: 5.297153e-04	ci right 5.952454e-04	k: 1146	n:2040000
Cons ci ratio: 1.397102e-03	ci left: 7.936450e-01	ci right 7.947551e-01	k: 1620169	n:2040000
KS ci ratio: 1.157130e-01	ci left: 5.297153e-04	ci right 5.952454e-04	k: 1146	n:2040000
STAM2   2040000 perm   1778 sec   (1147 perm/sec)   p_kst 5.617647e-04   p_cons 7.942005e-01   p_joint 5.617647e-04

Joint ci ratio: 1.154616e-01	ci left: 5.294999e-04	ci right 5.948512e-04	k: 1151	n:2050000
Cons ci ratio: 1.393620e-03	ci left: 7.936630e-01	ci right 7.947703e-01	k: 1628145	n:2050000
KS ci ratio: 1.154616e-01	ci left: 5.294999e-04	ci right 5.948512e-04	k: 1151	n:2050000
STAM2   2050000 perm   1794 sec   (1143 perm/sec)   p_kst 5.614634e-04   p_cons 7.942171e-01   p_joint 5.614634e-04

Joint ci ratio: 1.152119e-01	ci left: 5.292866e-04	ci right 5.944608e-04	k: 1156	n:2060000
Cons ci ratio: 1.390262e-03	ci left: 7.936575e-01	ci right 7.947621e-01	k: 1636073	n:2060000
KS ci ratio: 1.152119e-01	ci left: 5.292866e-04	ci right 5.944608e-04	k: 1156	n:2060000
STAM2   2060000 perm   1810 sec   (1138 perm/sec)   p_kst 5.611650e-04   p_cons 7.942102e-01   p_joint 5.611650e-04

Joint ci ratio: 1.150629e-01	ci left: 5.281372e-04	ci right 5.930800e-04	k: 1159	n:2070000
Cons ci ratio: 1.386970e-03	ci left: 7.936423e-01	ci right 7.947443e-01	k: 1643981	n:2070000
KS ci ratio: 1.150629e-01	ci left: 5.281372e-04	ci right 5.930800e-04	k: 1159	n:2070000
STAM2   2070000 perm   1826 sec   (1134 perm/sec)   p_kst 5.599034e-04   p_cons 7.941937e-01   p_joint 5.599034e-04

Joint ci ratio: 1.147172e-01	ci left: 5.288668e-04	ci right 5.936907e-04	k: 1166	n:2080000
Cons ci ratio: 1.383524e-03	ci left: 7.936692e-01	ci right 7.947685e-01	k: 1651976	n:2080000
KS ci ratio: 1.147172e-01	ci left: 5.288668e-04	ci right 5.936907e-04	k: 1166	n:2080000
STAM2   2080000 perm   1842 sec   (1129 perm/sec)   p_kst 5.605769e-04   p_cons 7.942192e-01   p_joint 5.605769e-04

Joint ci ratio: 1.141802e-01	ci left: 5.314489e-04	ci right 5.962638e-04	k: 1177	n:2090000
Cons ci ratio: 1.380124e-03	ci left: 7.936910e-01	ci right 7.947876e-01	k: 1659961	n:2090000
KS ci ratio: 1.141802e-01	ci left: 5.314489e-04	ci right 5.962638e-04	k: 1177	n:2090000
STAM2   2090000 perm   1858 sec   (1125 perm/sec)   p_kst 5.631579e-04   p_cons 7.942397e-01   p_joint 5.631579e-04

Joint ci ratio: 1.138905e-01	ci left: 5.316938e-04	ci right 5.963630e-04	k: 1183	n:2100000
Cons ci ratio: 1.376854e-03	ci left: 7.936874e-01	ci right 7.947814e-01	k: 1667893	n:2100000
KS ci ratio: 1.138905e-01	ci left: 5.316938e-04	ci right 5.963630e-04	k: 1183	n:2100000
STAM2   2100000 perm   1874 sec   (1121 perm/sec)   p_kst 5.633333e-04   p_cons 7.942348e-01   p_joint 5.633333e-04

Joint ci ratio: 1.136987e-01	ci left: 5.310157e-04	ci right 5.954864e-04	k: 1187	n:2110000
Cons ci ratio: 1.373553e-03	ci left: 7.936970e-01	ci right 7.947884e-01	k: 1675853	n:2110000
KS ci ratio: 1.136987e-01	ci left: 5.310157e-04	ci right 5.954864e-04	k: 1187	n:2110000
STAM2   2110000 perm   1890 sec   (1116 perm/sec)   p_kst 5.625592e-04   p_cons 7.942431e-01   p_joint 5.625592e-04

Joint ci ratio: 1.134126e-01	ci left: 5.312607e-04	ci right 5.955880e-04	k: 1193	n:2120000
Cons ci ratio: 1.370354e-03	ci left: 7.936877e-01	ci right 7.947766e-01	k: 1683773	n:2120000
KS ci ratio: 1.134126e-01	ci left: 5.312607e-04	ci right 5.955880e-04	k: 1193	n:2120000
STAM2   2120000 perm   1907 sec   (1112 perm/sec)   p_kst 5.627358e-04   p_cons 7.942325e-01   p_joint 5.627358e-04

Joint ci ratio: 1.132232e-01	ci left: 5.305912e-04	ci right 5.947230e-04	k: 1197	n:2130000
Cons ci ratio: 1.367195e-03	ci left: 7.936743e-01	ci right 7.947606e-01	k: 1691684	n:2130000
KS ci ratio: 1.132232e-01	ci left: 5.305912e-04	ci right 5.947230e-04	k: 1197	n:2130000
STAM2   2130000 perm   1923 sec   (1108 perm/sec)   p_kst 5.619718e-04   p_cons 7.942178e-01   p_joint 5.619718e-04

Joint ci ratio: 1.130818e-01	ci left: 5.294740e-04	ci right 5.933854e-04	k: 1200	n:2140000
Cons ci ratio: 1.363858e-03	ci left: 7.937087e-01	ci right 7.947924e-01	k: 1699697	n:2140000
KS ci ratio: 1.130818e-01	ci left: 5.294740e-04	ci right 5.933854e-04	k: 1200	n:2140000
STAM2   2140000 perm   1940 sec   (1103 perm/sec)   p_kst 5.607477e-04   p_cons 7.942509e-01   p_joint 5.607477e-04

Joint ci ratio: 1.129878e-01	ci left: 5.279152e-04	ci right 5.915821e-04	k: 1202	n:2150000
Cons ci ratio: 1.360661e-03	ci left: 7.937153e-01	ci right 7.947965e-01	k: 1707651	n:2150000
KS ci ratio: 1.129878e-01	ci left: 5.279152e-04	ci right 5.915821e-04	k: 1202	n:2150000
STAM2   2150000 perm   1956 sec   (1099 perm/sec)   p_kst 5.590698e-04   p_cons 7.942563e-01   p_joint 5.590698e-04

Joint ci ratio: 1.126605e-01	ci left: 5.286205e-04	ci right 5.921754e-04	k: 1209	n:2160000
Cons ci ratio: 1.357391e-03	ci left: 7.937446e-01	ci right 7.948232e-01	k: 1715654	n:2160000
KS ci ratio: 1.126605e-01	ci left: 5.286205e-04	ci right 5.921754e-04	k: 1209	n:2160000
STAM2   2160000 perm   1972 sec   (1095 perm/sec)   p_kst 5.597222e-04   p_cons 7.942843e-01   p_joint 5.597222e-04

Joint ci ratio: 1.123360e-01	ci left: 5.293195e-04	ci right 5.927630e-04	k: 1216	n:2170000
Cons ci ratio: 1.354334e-03	ci left: 7.937279e-01	ci right 7.948040e-01	k: 1723558	n:2170000
KS ci ratio: 1.123360e-01	ci left: 5.293195e-04	ci right 5.927630e-04	k: 1216	n:2170000
STAM2   2170000 perm   1989 sec   (1091 perm/sec)   p_kst 5.603687e-04   p_cons 7.942664e-01   p_joint 5.603687e-04

Joint ci ratio: 1.121519e-01	ci left: 5.286748e-04	ci right 5.919303e-04	k: 1220	n:2180000
Cons ci ratio: 1.351116e-03	ci left: 7.937555e-01	ci right 7.948291e-01	k: 1731558	n:2180000
KS ci ratio: 1.121519e-01	ci left: 5.286748e-04	ci right 5.919303e-04	k: 1220	n:2180000
STAM2   2180000 perm   2006 sec   (1087 perm/sec)   p_kst 5.596330e-04   p_cons 7.942927e-01   p_joint 5.596330e-04

Joint ci ratio: 1.119229e-01	ci left: 5.284799e-04	ci right 5.915744e-04	k: 1225	n:2190000
Cons ci ratio: 1.348031e-03	ci left: 7.937558e-01	ci right 7.948270e-01	k: 1739499	n:2190000
KS ci ratio: 1.119229e-01	ci left: 5.284799e-04	ci right 5.915744e-04	k: 1225	n:2190000
STAM2   2190000 perm   2022 sec   (1083 perm/sec)   p_kst 5.593607e-04   p_cons 7.942918e-01   p_joint 5.593607e-04

Joint ci ratio: 1.116048e-01	ci left: 5.291706e-04	ci right 5.921562e-04	k: 1232	n:2200000
Cons ci ratio: 1.344876e-03	ci left: 7.937785e-01	ci right 7.948471e-01	k: 1747489	n:2200000
KS ci ratio: 1.116048e-01	ci left: 5.291706e-04	ci right 5.921562e-04	k: 1232	n:2200000
STAM2   2200000 perm   2039 sec   (1079 perm/sec)   p_kst 5.600000e-04   p_cons 7.943132e-01   p_joint 5.600000e-04

Joint ci ratio: 1.113342e-01	ci left: 5.294154e-04	ci right 5.922673e-04	k: 1238	n:2210000
Cons ci ratio: 1.341761e-03	ci left: 7.937964e-01	ci right 7.948626e-01	k: 1755469	n:2210000
KS ci ratio: 1.113342e-01	ci left: 5.294154e-04	ci right 5.922673e-04	k: 1238	n:2210000
STAM2   2210000 perm   2056 sec   (1075 perm/sec)   p_kst 5.601810e-04   p_cons 7.943299e-01   p_joint 5.601810e-04

Joint ci ratio: 1.111102e-01	ci left: 5.292202e-04	ci right 5.919144e-04	k: 1243	n:2220000
Cons ci ratio: 1.338760e-03	ci left: 7.937916e-01	ci right 7.948554e-01	k: 1763399	n:2220000
KS ci ratio: 1.111102e-01	ci left: 5.292202e-04	ci right 5.919144e-04	k: 1243	n:2220000
STAM2   2220000 perm   2073 sec   (1071 perm/sec)   p_kst 5.599099e-04   p_cons 7.943239e-01   p_joint 5.599099e-04

Joint ci ratio: 1.109766e-01	ci left: 5.281549e-04	ci right 5.906427e-04	k: 1246	n:2230000
Cons ci ratio: 1.335704e-03	ci left: 7.938052e-01	ci right 7.948667e-01	k: 1771370	n:2230000
KS ci ratio: 1.109766e-01	ci left: 5.281549e-04	ci right 5.906427e-04	k: 1246	n:2230000
STAM2   2230000 perm   2090 sec   (1067 perm/sec)   p_kst 5.587444e-04   p_cons 7.943363e-01   p_joint 5.587444e-04

Joint ci ratio: 1.107105e-01	ci left: 5.284014e-04	ci right 5.907587e-04	k: 1252	n:2240000
Cons ci ratio: 1.332593e-03	ci left: 7.938375e-01	ci right 7.948965e-01	k: 1779383	n:2240000
KS ci ratio: 1.107105e-01	ci left: 5.284014e-04	ci right 5.907587e-04	k: 1252	n:2240000
STAM2   2240000 perm   2107 sec   (1063 perm/sec)   p_kst 5.589286e-04   p_cons 7.943674e-01   p_joint 5.589286e-04

Joint ci ratio: 1.107107e-01	ci left: 5.260529e-04	ci right 5.881331e-04	k: 1252	n:2250000
Cons ci ratio: 1.329671e-03	ci left: 7.938282e-01	ci right 7.948848e-01	k: 1787303	n:2250000
KS ci ratio: 1.107107e-01	ci left: 5.260529e-04	ci right 5.881331e-04	k: 1252	n:2250000
STAM2   2250000 perm   2124 sec   (1059 perm/sec)   p_kst 5.564444e-04   p_cons 7.943569e-01   p_joint 5.564444e-04

Joint ci ratio: 1.103151e-01	ci left: 5.275975e-04	ci right 5.896231e-04	k: 1261	n:2260000
Cons ci ratio: 1.326678e-03	ci left: 7.938411e-01	ci right 7.948954e-01	k: 1795273	n:2260000
KS ci ratio: 1.103151e-01	ci left: 5.275975e-04	ci right 5.896231e-04	k: 1261	n:2260000
STAM2   2260000 perm   2142 sec   (1055 perm/sec)   p_kst 5.579646e-04   p_cons 7.943686e-01   p_joint 5.579646e-04

Joint ci ratio: 1.100538e-01	ci left: 5.278436e-04	ci right 5.897416e-04	k: 1267	n:2270000
Cons ci ratio: 1.323788e-03	ci left: 7.938335e-01	ci right 7.948855e-01	k: 1803197	n:2270000
KS ci ratio: 1.100538e-01	ci left: 5.278436e-04	ci right 5.897416e-04	k: 1267	n:2270000
STAM2   2270000 perm   2159 sec   (1051 perm/sec)   p_kst 5.581498e-04   p_cons 7.943599e-01   p_joint 5.581498e-04

Joint ci ratio: 1.097512e-01	ci left: 5.285143e-04	ci right 5.903095e-04	k: 1274	n:2280000
Cons ci ratio: 1.320916e-03	ci left: 7.938261e-01	ci right 7.948758e-01	k: 1811121	n:2280000
KS ci ratio: 1.097512e-01	ci left: 5.285143e-04	ci right 5.903095e-04	k: 1274	n:2280000
STAM2   2280000 perm   2176 sec   (1048 perm/sec)   p_kst 5.587719e-04   p_cons 7.943513e-01   p_joint 5.587719e-04

Joint ci ratio: 1.096653e-01	ci left: 5.270558e-04	ci right 5.886291e-04	k: 1276	n:2290000
Cons ci ratio: 1.317976e-03	ci left: 7.938406e-01	ci right 7.948879e-01	k: 1819095	n:2290000
KS ci ratio: 1.096653e-01	ci left: 5.270558e-04	ci right 5.886291e-04	k: 1276	n:2290000
STAM2   2290000 perm   2193 sec   (1044 perm/sec)   p_kst 5.572052e-04   p_cons 7.943646e-01   p_joint 5.572052e-04

Joint ci ratio: 1.094086e-01	ci left: 5.273014e-04	ci right 5.887500e-04	k: 1282	n:2300000
Cons ci ratio: 1.315189e-03	ci left: 7.938214e-01	ci right 7.948665e-01	k: 1826992	n:2300000
KS ci ratio: 1.094086e-01	ci left: 5.273014e-04	ci right 5.887500e-04	k: 1282	n:2300000
STAM2   2300000 perm   2211 sec   (1040 perm/sec)   p_kst 5.573913e-04   p_cons 7.943443e-01   p_joint 5.573913e-04

Joint ci ratio: 1.092385e-01	ci left: 5.267030e-04	ci right 5.879802e-04	k: 1286	n:2310000
Cons ci ratio: 1.312274e-03	ci left: 7.938388e-01	ci right 7.948817e-01	k: 1834973	n:2310000
KS ci ratio: 1.092385e-01	ci left: 5.267030e-04	ci right 5.879802e-04	k: 1286	n:2310000
STAM2   2310000 perm   2228 sec   (1037 perm/sec)   p_kst 5.567100e-04   p_cons 7.943606e-01   p_joint 5.567100e-04

Joint ci ratio: 1.089847e-01	ci left: 5.269484e-04	ci right 5.881026e-04	k: 1292	n:2320000
Cons ci ratio: 1.309514e-03	ci left: 7.938220e-01	ci right 7.948626e-01	k: 1842875	n:2320000
KS ci ratio: 1.089847e-01	ci left: 5.269484e-04	ci right 5.881026e-04	k: 1292	n:2320000
STAM2   2320000 perm   2246 sec   (1033 perm/sec)   p_kst 5.568966e-04   p_cons 7.943427e-01   p_joint 5.568966e-04

Joint ci ratio: 1.088166e-01	ci left: 5.263568e-04	ci right 5.873420e-04	k: 1296	n:2330000
Cons ci ratio: 1.306784e-03	ci left: 7.938023e-01	ci right 7.948407e-01	k: 1850770	n:2330000
KS ci ratio: 1.088166e-01	ci left: 5.263568e-04	ci right 5.873420e-04	k: 1296	n:2330000
STAM2   2330000 perm   2264 sec   (1029 perm/sec)   p_kst 5.562232e-04   p_cons 7.943219e-01   p_joint 5.562232e-04

Joint ci ratio: 1.086075e-01	ci left: 5.261860e-04	ci right 5.870269e-04	k: 1301	n:2340000
Cons ci ratio: 1.304080e-03	ci left: 7.937807e-01	ci right 7.948169e-01	k: 1858660	n:2340000
KS ci ratio: 1.086075e-01	ci left: 5.261860e-04	ci right 5.870269e-04	k: 1301	n:2340000
STAM2   2340000 perm   2281 sec   (1026 perm/sec)   p_kst 5.559829e-04   p_cons 7.942991e-01   p_joint 5.559829e-04

Joint ci ratio: 1.083995e-01	ci left: 5.260168e-04	ci right 5.867143e-04	k: 1306	n:2350000
Cons ci ratio: 1.301224e-03	ci left: 7.938014e-01	ci right 7.948354e-01	k: 1866649	n:2350000
KS ci ratio: 1.083995e-01	ci left: 5.260168e-04	ci right 5.867143e-04	k: 1306	n:2350000
STAM2   2350000 perm   2299 sec   (1022 perm/sec)   p_kst 5.557447e-04   p_cons 7.943187e-01   p_joint 5.557447e-04

Joint ci ratio: 1.082341e-01	ci left: 5.254369e-04	ci right 5.859690e-04	k: 1310	n:2360000
Cons ci ratio: 1.298433e-03	ci left: 7.938104e-01	ci right 7.948422e-01	k: 1874611	n:2360000
KS ci ratio: 1.082341e-01	ci left: 5.254369e-04	ci right 5.859690e-04	k: 1310	n:2360000
STAM2   2360000 perm   2317 sec   (1019 perm/sec)   p_kst 5.550847e-04   p_cons 7.943267e-01   p_joint 5.550847e-04

Joint ci ratio: 1.079872e-01	ci left: 5.256831e-04	ci right 5.860966e-04	k: 1316	n:2370000
Cons ci ratio: 1.295741e-03	ci left: 7.937988e-01	ci right 7.948284e-01	k: 1882524	n:2370000
KS ci ratio: 1.079872e-01	ci left: 5.256831e-04	ci right 5.860966e-04	k: 1316	n:2370000
STAM2   2370000 perm   2334 sec   (1015 perm/sec)   p_kst 5.552743e-04   p_cons 7.943139e-01   p_joint 5.552743e-04

Joint ci ratio: 1.077421e-01	ci left: 5.259274e-04	ci right 5.862230e-04	k: 1322	n:2380000
Cons ci ratio: 1.292925e-03	ci left: 7.938229e-01	ci right 7.948503e-01	k: 1890522	n:2380000
KS ci ratio: 1.077421e-01	ci left: 5.259274e-04	ci right 5.862230e-04	k: 1322	n:2380000
STAM2   2380000 perm   2352 sec   (1012 perm/sec)   p_kst 5.554622e-04   p_cons 7.943370e-01   p_joint 5.554622e-04

Joint ci ratio: 1.074986e-01	ci left: 5.261697e-04	ci right 5.863482e-04	k: 1328	n:2390000
Cons ci ratio: 1.290170e-03	ci left: 7.938360e-01	ci right 7.948612e-01	k: 1898494	n:2390000
KS ci ratio: 1.074986e-01	ci left: 5.261697e-04	ci right 5.863482e-04	k: 1328	n:2390000
STAM2   2390000 perm   2370 sec   (1009 perm/sec)   p_kst 5.556485e-04   p_cons 7.943490e-01   p_joint 5.556485e-04

Joint ci ratio: 1.072969e-01	ci left: 5.260047e-04	ci right 5.860444e-04	k: 1333	n:2400000
Cons ci ratio: 1.287484e-03	ci left: 7.938360e-01	ci right 7.948591e-01	k: 1906435	n:2400000
KS ci ratio: 1.072969e-01	ci left: 5.260047e-04	ci right 5.860444e-04	k: 1333	n:2400000
STAM2   2400000 perm   2388 sec   (1005 perm/sec)   p_kst 5.554167e-04   p_cons 7.943479e-01   p_joint 5.554167e-04

Joint ci ratio: 1.070964e-01	ci left: 5.258412e-04	ci right 5.857430e-04	k: 1338	n:2410000
Cons ci ratio: 1.284703e-03	ci left: 7.938643e-01	ci right 7.948852e-01	k: 1914444	n:2410000
KS ci ratio: 1.070964e-01	ci left: 5.258412e-04	ci right 5.857430e-04	k: 1338	n:2410000
STAM2   2410000 perm   2406 sec   (1002 perm/sec)   p_kst 5.551867e-04   p_cons 7.943751e-01   p_joint 5.551867e-04

Joint ci ratio: 1.067779e-01	ci left: 5.268857e-04	ci right 5.867167e-04	k: 1346	n:2420000
Cons ci ratio: 1.282068e-03	ci left: 7.938597e-01	ci right 7.948785e-01	k: 1922374	n:2420000
KS ci ratio: 1.067779e-01	ci left: 5.268857e-04	ci right 5.867167e-04	k: 1346	n:2420000
STAM2   2420000 perm   2424 sec   (998 perm/sec)   p_kst 5.561983e-04   p_cons 7.943694e-01   p_joint 5.561983e-04

Joint ci ratio: 1.065408e-01	ci left: 5.271207e-04	ci right 5.868372e-04	k: 1352	n:2430000
Cons ci ratio: 1.279361e-03	ci left: 7.938777e-01	ci right 7.948944e-01	k: 1930359	n:2430000
KS ci ratio: 1.065408e-01	ci left: 5.271207e-04	ci right 5.868372e-04	k: 1352	n:2430000
STAM2   2430000 perm   2442 sec   (995 perm/sec)   p_kst 5.563786e-04   p_cons 7.943864e-01   p_joint 5.563786e-04

Joint ci ratio: 1.061492e-01	ci left: 5.289497e-04	ci right 5.886394e-04	k: 1362	n:2440000
Cons ci ratio: 1.276773e-03	ci left: 7.938694e-01	ci right 7.948840e-01	k: 1938280	n:2440000
KS ci ratio: 1.061492e-01	ci left: 5.289497e-04	ci right 5.886394e-04	k: 1362	n:2440000
STAM2   2440000 perm   2460 sec   (992 perm/sec)   p_kst 5.581967e-04   p_cons 7.943770e-01   p_joint 5.581967e-04

Joint ci ratio: 1.059938e-01	ci left: 5.283801e-04	ci right 5.879128e-04	k: 1366	n:2450000
Cons ci ratio: 1.274187e-03	ci left: 7.938648e-01	ci right 7.948774e-01	k: 1946210	n:2450000
KS ci ratio: 1.059938e-01	ci left: 5.283801e-04	ci right 5.879128e-04	k: 1366	n:2450000
STAM2   2450000 perm   2478 sec   (989 perm/sec)   p_kst 5.575510e-04   p_cons 7.943714e-01   p_joint 5.575510e-04

Joint ci ratio: 1.058005e-01	ci left: 5.282109e-04	ci right 5.876092e-04	k: 1371	n:2460000
Cons ci ratio: 1.271644e-03	ci left: 7.938529e-01	ci right 7.948635e-01	k: 1954122	n:2460000
KS ci ratio: 1.058005e-01	ci left: 5.282109e-04	ci right 5.876092e-04	k: 1371	n:2460000
STAM2   2460000 perm   2497 sec   (985 perm/sec)   p_kst 5.573171e-04   p_cons 7.943585e-01   p_joint 5.573171e-04

Joint ci ratio: 1.056083e-01	ci left: 5.280432e-04	ci right 5.873080e-04	k: 1376	n:2470000
Cons ci ratio: 1.269180e-03	ci left: 7.938249e-01	ci right 7.948335e-01	k: 1961994	n:2470000
KS ci ratio: 1.056083e-01	ci left: 5.280432e-04	ci right 5.873080e-04	k: 1376	n:2470000
STAM2   2470000 perm   2515 sec   (982 perm/sec)   p_kst 5.570850e-04   p_cons 7.943296e-01   p_joint 5.570850e-04

Joint ci ratio: 1.052648e-01	ci left: 5.294473e-04	ci right 5.886645e-04	k: 1385	n:2480000
Cons ci ratio: 1.266586e-03	ci left: 7.938343e-01	ci right 7.948408e-01	k: 1969958	n:2480000
KS ci ratio: 1.052648e-01	ci left: 5.294473e-04	ci right 5.886645e-04	k: 1385	n:2480000
STAM2   2480000 perm   2534 sec   (979 perm/sec)   p_kst 5.584677e-04   p_cons 7.943379e-01   p_joint 5.584677e-04

Joint ci ratio: 1.048870e-01	ci left: 5.312316e-04	ci right 5.904219e-04	k: 1395	n:2490000
Cons ci ratio: 1.264091e-03	ci left: 7.938223e-01	ci right 7.948268e-01	k: 1977869	n:2490000
KS ci ratio: 1.048870e-01	ci left: 5.312316e-04	ci right 5.904219e-04	k: 1395	n:2490000
STAM2   2490000 perm   2553 sec   (975 perm/sec)   p_kst 5.602410e-04   p_cons 7.943249e-01   p_joint 5.602410e-04

Joint ci ratio: 1.046996e-01	ci left: 5.310542e-04	ci right 5.901126e-04	k: 1400	n:2500000
Cons ci ratio: 1.261579e-03	ci left: 7.938184e-01	ci right 7.948209e-01	k: 1985800	n:2500000
KS ci ratio: 1.046996e-01	ci left: 5.310542e-04	ci right 5.901126e-04	k: 1400	n:2500000
STAM2   2500000 perm   2572 sec   (972 perm/sec)   p_kst 5.600000e-04   p_cons 7.943200e-01   p_joint 5.600000e-04

Joint ci ratio: 1.045133e-01	ci left: 5.308784e-04	ci right 5.898057e-04	k: 1405	n:2510000
Cons ci ratio: 1.258996e-03	ci left: 7.938369e-01	ci right 7.948373e-01	k: 1993787	n:2510000
KS ci ratio: 1.045133e-01	ci left: 5.308784e-04	ci right 5.898057e-04	k: 1405	n:2510000
STAM2   2510000 perm   2591 sec   (969 perm/sec)   p_kst 5.597610e-04   p_cons 7.943375e-01   p_joint 5.597610e-04

Joint ci ratio: 1.042910e-01	ci left: 5.310905e-04	ci right 5.899083e-04	k: 1411	n:2520000
Cons ci ratio: 1.256551e-03	ci left: 7.938234e-01	ci right 7.948219e-01	k: 2001694	n:2520000
KS ci ratio: 1.042910e-01	ci left: 5.310905e-04	ci right 5.899083e-04	k: 1411	n:2520000
STAM2   2520000 perm   2609 sec   (966 perm/sec)   p_kst 5.599206e-04   p_cons 7.943230e-01   p_joint 5.599206e-04

Joint ci ratio: 1.041069e-01	ci left: 5.309161e-04	ci right 5.896044e-04	k: 1416	n:2530000
Cons ci ratio: 1.254035e-03	ci left: 7.938322e-01	ci right 7.948287e-01	k: 2009657	n:2530000
KS ci ratio: 1.041069e-01	ci left: 5.309161e-04	ci right 5.896044e-04	k: 1416	n:2530000
STAM2   2530000 perm   2628 sec   (963 perm/sec)   p_kst 5.596838e-04   p_cons 7.943308e-01   p_joint 5.596838e-04

Joint ci ratio: 1.039969e-01	ci left: 5.299762e-04	ci right 5.884950e-04	k: 1419	n:2540000
Cons ci ratio: 1.251587e-03	ci left: 7.938272e-01	ci right 7.948217e-01	k: 2017585	n:2540000
KS ci ratio: 1.039969e-01	ci left: 5.299762e-04	ci right 5.884950e-04	k: 1419	n:2540000
STAM2   2540000 perm   2647 sec   (959 perm/sec)   p_kst 5.586614e-04   p_cons 7.943248e-01   p_joint 5.586614e-04

Joint ci ratio: 1.038143e-01	ci left: 5.298077e-04	ci right 5.881989e-04	k: 1424	n:2550000
Cons ci ratio: 1.249151e-03	ci left: 7.938230e-01	ci right 7.948156e-01	k: 2025515	n:2550000
KS ci ratio: 1.038143e-01	ci left: 5.298077e-04	ci right 5.881989e-04	k: 1424	n:2550000
STAM2   2550000 perm   2666 sec   (956 perm/sec)   p_kst 5.584314e-04   p_cons 7.943196e-01   p_joint 5.584314e-04

Joint ci ratio: 1.035964e-01	ci left: 5.300211e-04	ci right 5.883058e-04	k: 1430	n:2560000
Cons ci ratio: 1.246716e-03	ci left: 7.938219e-01	ci right 7.948126e-01	k: 2033453	n:2560000
KS ci ratio: 1.035964e-01	ci left: 5.300211e-04	ci right 5.883058e-04	k: 1430	n:2560000
STAM2   2560000 perm   2685 sec   (953 perm/sec)   p_kst 5.585937e-04   p_cons 7.943176e-01   p_joint 5.585937e-04

Joint ci ratio: 1.034881e-01	ci left: 5.290959e-04	ci right 5.872142e-04	k: 1433	n:2570000
Cons ci ratio: 1.244240e-03	ci left: 7.938357e-01	ci right 7.948244e-01	k: 2041429	n:2570000
KS ci ratio: 1.034881e-01	ci left: 5.290959e-04	ci right 5.872142e-04	k: 1433	n:2570000
STAM2   2570000 perm   2704 sec   (950 perm/sec)   p_kst 5.575875e-04   p_cons 7.943304e-01   p_joint 5.575875e-04

Joint ci ratio: 1.033081e-01	ci left: 5.289330e-04	ci right 5.869263e-04	k: 1438	n:2580000
Cons ci ratio: 1.241899e-03	ci left: 7.938175e-01	ci right 7.948043e-01	k: 2049323	n:2580000
KS ci ratio: 1.033081e-01	ci left: 5.289330e-04	ci right 5.869263e-04	k: 1438	n:2580000
STAM2   2580000 perm   2724 sec   (947 perm/sec)   p_kst 5.573643e-04   p_cons 7.943112e-01   p_joint 5.573643e-04

Joint ci ratio: 1.031291e-01	ci left: 5.287714e-04	ci right 5.866405e-04	k: 1443	n:2590000
Cons ci ratio: 1.239584e-03	ci left: 7.937960e-01	ci right 7.947810e-01	k: 2057208	n:2590000
KS ci ratio: 1.031291e-01	ci left: 5.287714e-04	ci right 5.866405e-04	k: 1443	n:2590000
STAM2   2590000 perm   2743 sec   (944 perm/sec)   p_kst 5.571429e-04   p_cons 7.942888e-01   p_joint 5.571429e-04

Joint ci ratio: 1.029866e-01	ci left: 5.282365e-04	ci right 5.859623e-04	k: 1447	n:2600000
Cons ci ratio: 1.237192e-03	ci left: 7.937985e-01	ci right 7.947816e-01	k: 2065155	n:2600000
KS ci ratio: 1.029866e-01	ci left: 5.282365e-04	ci right 5.859623e-04	k: 1447	n:2600000
STAM2   2600000 perm   2763 sec   (941 perm/sec)   p_kst 5.565385e-04   p_cons 7.942904e-01   p_joint 5.565385e-04

Joint ci ratio: 1.028093e-01	ci left: 5.280790e-04	ci right 5.856822e-04	k: 1452	n:2610000
Cons ci ratio: 1.234864e-03	ci left: 7.937876e-01	ci right 7.947688e-01	k: 2073067	n:2610000
KS ci ratio: 1.028093e-01	ci left: 5.280790e-04	ci right 5.856822e-04	k: 1452	n:2610000
STAM2   2610000 perm   2783 sec   (938 perm/sec)   p_kst 5.563218e-04   p_cons 7.942785e-01   p_joint 5.563218e-04

Joint ci ratio: 1.023872e-01	ci left: 5.305261e-04	ci right 5.881444e-04	k: 1464	n:2620000
Cons ci ratio: 1.232544e-03	ci left: 7.937783e-01	ci right 7.947577e-01	k: 2080983	n:2620000
KS ci ratio: 1.023872e-01	ci left: 5.305261e-04	ci right 5.881444e-04	k: 1464	n:2620000
STAM2   2620000 perm   2802 sec   (935 perm/sec)   p_kst 5.587786e-04   p_cons 7.942683e-01   p_joint 5.587786e-04

Joint ci ratio: 1.021782e-01	ci left: 5.307319e-04	ci right 5.882478e-04	k: 1470	n:2630000
Cons ci ratio: 1.230220e-03	ci left: 7.937737e-01	ci right 7.947512e-01	k: 2088911	n:2630000
KS ci ratio: 1.021782e-01	ci left: 5.307319e-04	ci right 5.882478e-04	k: 1470	n:2630000
STAM2   2630000 perm   2822 sec   (932 perm/sec)   p_kst 5.589354e-04   p_cons 7.942627e-01   p_joint 5.589354e-04

Joint ci ratio: 1.020742e-01	ci left: 5.298289e-04	ci right 5.871850e-04	k: 1473	n:2640000
Cons ci ratio: 1.227890e-03	ci left: 7.937740e-01	ci right 7.947496e-01	k: 2096852	n:2640000
KS ci ratio: 1.020742e-01	ci left: 5.298289e-04	ci right 5.871850e-04	k: 1473	n:2640000
STAM2   2640000 perm   2842 sec   (929 perm/sec)   p_kst 5.579545e-04   p_cons 7.942621e-01   p_joint 5.579545e-04

Joint ci ratio: 1.017639e-01	ci left: 5.311392e-04	ci right 5.884519e-04	k: 1482	n:2650000
Cons ci ratio: 1.225519e-03	ci left: 7.937886e-01	ci right 7.947624e-01	k: 2104831	n:2650000
KS ci ratio: 1.017639e-01	ci left: 5.311392e-04	ci right 5.884519e-04	k: 1482	n:2650000
STAM2   2650000 perm   2862 sec   (926 perm/sec)   p_kst 5.592453e-04   p_cons 7.942758e-01   p_joint 5.592453e-04

Joint ci ratio: 1.015246e-01	ci left: 5.317071e-04	ci right 5.889381e-04	k: 1489	n:2660000
Cons ci ratio: 1.223226e-03	ci left: 7.937863e-01	ci right 7.947582e-01	k: 2112765	n:2660000
KS ci ratio: 1.015246e-01	ci left: 5.317071e-04	ci right 5.889381e-04	k: 1489	n:2660000
STAM2   2660000 perm   2882 sec   (923 perm/sec)   p_kst 5.597744e-04   p_cons 7.942726e-01   p_joint 5.597744e-04

Joint ci ratio: 1.013886e-01	ci left: 5.311758e-04	ci right 5.882685e-04	k: 1493	n:2670000
Cons ci ratio: 1.220928e-03	ci left: 7.937884e-01	ci right 7.947585e-01	k: 2120711	n:2670000
KS ci ratio: 1.013886e-01	ci left: 5.311758e-04	ci right 5.882685e-04	k: 1493	n:2670000
STAM2   2670000 perm   2901 sec   (920 perm/sec)   p_kst 5.591760e-04   p_cons 7.942738e-01   p_joint 5.591760e-04

Joint ci ratio: 1.009837e-01	ci left: 5.335581e-04	ci right 5.906643e-04	k: 1505	n:2680000
Cons ci ratio: 1.218651e-03	ci left: 7.937887e-01	ci right 7.947570e-01	k: 2128652	n:2680000
KS ci ratio: 1.009837e-01	ci left: 5.335581e-04	ci right 5.906643e-04	k: 1505	n:2680000
STAM2   2680000 perm   2922 sec   (917 perm/sec)   p_kst 5.615672e-04   p_cons 7.942731e-01   p_joint 5.615672e-04

Joint ci ratio: 1.007498e-01	ci left: 5.341112e-04	ci right 5.911364e-04	k: 1512	n:2690000
Cons ci ratio: 1.216358e-03	ci left: 7.937964e-01	ci right 7.947629e-01	k: 2136613	n:2690000
KS ci ratio: 1.007498e-01	ci left: 5.341112e-04	ci right 5.911364e-04	k: 1512	n:2690000
STAM2   2690000 perm   2942 sec   (914 perm/sec)   p_kst 5.620818e-04   p_cons 7.942799e-01   p_joint 5.620818e-04

Joint ci ratio: 1.006170e-01	ci left: 5.335772e-04	ci right 5.904658e-04	k: 1516	n:2700000
Cons ci ratio: 1.214139e-03	ci left: 7.937877e-01	ci right 7.947524e-01	k: 2144530	n:2700000
KS ci ratio: 1.006170e-01	ci left: 5.335772e-04	ci right 5.904658e-04	k: 1516	n:2700000
STAM2   2700000 perm   2962 sec   (912 perm/sec)   p_kst 5.614815e-04   p_cons 7.942704e-01   p_joint 5.614815e-04

Joint ci ratio: 1.003856e-01	ci left: 5.341264e-04	ci right 5.909349e-04	k: 1523	n:2710000
Cons ci ratio: 1.211838e-03	ci left: 7.938046e-01	ci right 7.947675e-01	k: 2152516	n:2710000
KS ci ratio: 1.003856e-01	ci left: 5.341264e-04	ci right 5.909349e-04	k: 1523	n:2710000
STAM2   2710000 perm   2982 sec   (909 perm/sec)   p_kst 5.619926e-04   p_cons 7.942863e-01   p_joint 5.619926e-04

Joint ci ratio: 1.002870e-01	ci left: 5.332380e-04	ci right 5.898929e-04	k: 1526	n:2720000
Cons ci ratio: 1.209643e-03	ci left: 7.937960e-01	ci right 7.947571e-01	k: 2160433	n:2720000
KS ci ratio: 1.002870e-01	ci left: 5.332380e-04	ci right 5.898929e-04	k: 1526	n:2720000
STAM2   2720000 perm   3002 sec   (906 perm/sec)   p_kst 5.610294e-04   p_cons 7.942768e-01   p_joint 5.610294e-04

Joint ci ratio: 1.001887e-01	ci left: 5.323561e-04	ci right 5.888586e-04	k: 1529	n:2730000
Cons ci ratio: 1.207373e-03	ci left: 7.938112e-01	ci right 7.947706e-01	k: 2168415	n:2730000
KS ci ratio: 1.001887e-01	ci left: 5.323561e-04	ci right 5.888586e-04	k: 1529	n:2730000
STAM2   2730000 perm   3023 sec   (903 perm/sec)   p_kst 5.600733e-04   p_cons 7.942912e-01   p_joint 5.600733e-04

Joint ci ratio: 9.996022e-02	ci left: 5.329040e-04	ci right 5.893281e-04	k: 1536	n:2740000
Cons ci ratio: 1.205142e-03	ci left: 7.938191e-01	ci right 7.947767e-01	k: 2176377	n:2740000
KS ci ratio: 9.996022e-02	ci left: 5.329040e-04	ci right 5.893281e-04	k: 1536	n:2740000
STAM2   2740000 perm   3043 sec   (900 perm/sec)   p_kst 5.605839e-04   p_cons 7.942982e-01   p_joint 5.605839e-04

Outputting figure to mutsig2_images.part000000000167/STAM2.2_1634_2740000_0.00056058_0.7943_0.00056058.png
                gene_name: STAM2
               theta_stop: 0.100 
                    nperm: 2740000 
                     p_ks: 0.00056 
        ci_ks_bounds_left: 0.00053 
       ci_ks_bounds_right: 0.00059 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.00056 
     ci_joint_bounds_left: 0.00053 
    ci_joint_bounds_right: 0.00059 

Current progress: 98 percent done.
STAMBP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.497168e-03	ci left: 9.509609e-01	ci right 9.591714e-01	k: 9552	n:10000
Cons ci ratio: 8.170639e-02	ci left: 1.793999e-01	ci right 1.947829e-01	k: 1870	n:10000
KS ci ratio: 2.122464e-02	ci left: 7.649647e-01	ci right 7.814758e-01	k: 7733	n:10000
STAMBP   10000 perm   1 sec   (7713 perm/sec)   p_kst 7.733000e-01   p_cons 1.870000e-01   p_joint 9.552000e-01

Outputting figure to mutsig2_images.part000000000167/STAMBP.2_1311_10000_0.7733_0.187_0.9552.png
                gene_name: STAMBP
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000167
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 167 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1416>
Subject: Job 8004586: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1416>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000168> was used as the working directory.
Started at Sun Nov 11 15:20:37 2012
Results reported at Sun Nov 11 15:31:04 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000168.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000168.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 168  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000168.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    747.54 sec.
    Max Memory :      4794 MB
    Max Swap   :      7168 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
168
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 168
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 168: processing genes 15109 - 15199
Calculating significance of each gene.
Using projection method.
15109	STARD3	1
15110	STARD3NL	3.738724e-01
15111	STARD4	2.071981e-02
15112	STARD5	1
15113	STARD6	5.191061e-01
15114	STARD7	5.482585e-01
15115	STARD8	7.849041e-01
15116	STAT1	1
15117	STAT2	9.718326e-01
15118	STAT3	7.357362e-01
15119	STAT4	1.940059e-01
15120	STAT5A	8.902267e-01
15121	STAT5B	1
15122	STAT6	8.312031e-01
15123	STATH	1.990876e-01
15124	STAU1	9.177429e-01
15125	STAU2	4.323684e-01
15126	STBD1	7.824187e-01
15127	STC1	7.855465e-02
15128	STC2	1.291318e-01
15129	STEAP1	2.946440e-01
15130	STEAP2	8.049154e-01
15131	STEAP3	6.123524e-01
15132	STEAP4	8.639584e-01
15133	STH	1
15134	STIL	7.050193e-01
15135	STIM1	2.948808e-02
15136	STIM2	8.837032e-01
15137	STIP1	6.071089e-01
15138	STK10	5.039487e-01
15139	STK11	8.183457e-02
15140	STK11IP	3.894978e-01
15141	STK16	4.262062e-01
15142	STK17A	1
15143	STK17B	1.545248e-01
15144	STK19	4.638183e-01
15145	STK24	7.812936e-01
15146	STK25	8.269186e-01
15147	STK3	5.137153e-01
15148	STK31	7.315907e-03
15149	STK32A	8.490561e-01
15150	STK32B	3.768128e-01
15151	STK32C	3.240132e-01
15152	STK33	1.695048e-01
15153	STK35	1
15154	STK36	7.283719e-01
15155	STK38	1.539316e-01
15156	STK38L	7.542191e-01
15157	STK39	7.207464e-01
15158	STK4	4.547057e-01
15159	STK40	6.884854e-01
15160	STMN1	1
15161	STMN2	8.215110e-02
15162	STMN3	1
15163	STMN4	1
15164	STOM	1
15165	STOML1	8.502301e-01
15166	STOML2	1
15167	STOML3	6.662985e-01
15168	STON1	1
15169	STON1-GTF2A1L	7.616999e-01
15170	STON2	5.433681e-01
15171	STOX1	1
15172	STOX2	6.563660e-01
15173	STRA13	1
15174	STRA6	9.495748e-01
15175	STRA8	1
15176	STRADA	7.674228e-01
15177	STRADB	1
15178	STRAP	2.132668e-01
15179	STRBP	1
15180	STRC	1
15181	STRN	2.633727e-01
15182	STRN3	4.797145e-01
15183	STRN4	1
15184	STS	4.754372e-02
15185	STT3A	1
15186	STT3B	9.409721e-01
15187	STUB1	1
15188	STX10	6.274442e-01
15189	STX11	4.114080e-01
15190	STX12	1
15191	STX16	1
15192	STX17	1
15193	STX18	1
15194	STX19	2.789347e-01
15195	STX1A	1
15196	STX1B	3.377790e-01
15197	STX2	4.742561e-01
15198	STX3	1
15199	STX4	1
Done

Running MutSig 2:
Scatter job 168: processing genes 15109 - 15199
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
STON1-GTF2A1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.953818e-02	ci left: 2.933074e-01	ci right 3.114079e-01	k: 3023	n:10000
Cons ci ratio: 1.035845e-02	ci left: 9.297834e-01	ci right 9.395616e-01	k: 9348	n:10000
KS ci ratio: 9.892670e-02	ci left: 1.289466e-01	ci right 1.424664e-01	k: 1356	n:10000
STON1-GTF2A1L   10000 perm   3 sec   (3997 perm/sec)   p_kst 1.356000e-01   p_cons 9.348000e-01   p_joint 3.023000e-01

Outputting figure to mutsig2_images.part000000000168/STON1-GTF2A1L.17_3589_10000_0.1356_0.9348_0.3023.png
                gene_name: STON1-GTF2A1L
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 2 percent done.
STK31
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.051047e-02	ci left: 3.662946e-01	ci right 3.853777e-01	k: 3758	n:10000
Cons ci ratio: 1.015329e-02	ci left: 9.322664e-01	ci right 9.418771e-01	k: 9372	n:10000
KS ci ratio: 8.036185e-02	ci left: 1.844192e-01	ci right 1.999605e-01	k: 1921	n:10000
STK31   10000 perm   2 sec   (4372 perm/sec)   p_kst 1.921000e-01   p_cons 9.372000e-01   p_joint 3.758000e-01

Outputting figure to mutsig2_images.part000000000168/STK31.13_3156_10000_0.1921_0.9372_0.3758.png
                gene_name: STK31
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 5 percent done.
STARD8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.304147e-02	ci left: 8.943634e-01	ci right 9.062022e-01	k: 9004	n:10000
Cons ci ratio: 2.706847e-02	ci left: 6.678349e-01	ci right 6.862618e-01	k: 6771	n:10000
KS ci ratio: 1.728785e-02	ci left: 8.298162e-01	ci right 8.443869e-01	k: 8372	n:10000
STARD8   10000 perm   2 sec   (4516 perm/sec)   p_kst 8.372000e-01   p_cons 6.771000e-01   p_joint 9.004000e-01

Outputting figure to mutsig2_images.part000000000168/STARD8.8_3372_10000_0.8372_0.6771_0.9004.png
                gene_name: STARD8
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.91 

Current progress: 7 percent done.
STIM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.889743e-02	ci left: 4.939506e-01	ci right 5.136472e-01	k: 5038	n:10000
Cons ci ratio: 4.416207e-02	ci left: 4.308381e-01	ci right 4.503965e-01	k: 4406	n:10000
KS ci ratio: 6.160471e-02	ci left: 2.792365e-01	ci right 2.970871e-01	k: 2881	n:10000
STIM1   10000 perm   2 sec   (5061 perm/sec)   p_kst 2.881000e-01   p_cons 4.406000e-01   p_joint 5.038000e-01

Outputting figure to mutsig2_images.part000000000168/STIM1.6_2106_10000_0.2881_0.4406_0.5038.png
                gene_name: STIM1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 10 percent done.
STK11IP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.897850e-02	ci left: 2.972729e-01	ci right 3.154400e-01	k: 3063	n:10000
Cons ci ratio: 1.159911e-01	ci left: 9.652432e-02	ci right 1.085084e-01	k: 1024	n:10000
KS ci ratio: 3.811184e-02	ci left: 5.041511e-01	ci right 5.238407e-01	k: 5140	n:10000
STK11IP   10000 perm   2 sec   (4591 perm/sec)   p_kst 5.140000e-01   p_cons 1.024000e-01   p_joint 3.063000e-01

Joint ci ratio: 4.377462e-02	ci left: 2.798927e-01	ci right 2.924695e-01	k: 5723	n:20000
Cons ci ratio: 8.416306e-02	ci left: 9.371693e-02	ci right 1.020004e-01	k: 1956	n:20000
KS ci ratio: 2.695918e-02	ci left: 5.068965e-01	ci right 5.207994e-01	k: 10277	n:20000
STK11IP   20000 perm   5 sec   (4111 perm/sec)   p_kst 5.138500e-01   p_cons 9.780000e-02   p_joint 2.861500e-01

Outputting figure to mutsig2_images.part000000000168/STK11IP.6_3400_20000_0.51385_0.0978_0.28615.png
                gene_name: STK11IP
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.098 
      ci_cons_bounds_left: 0.094 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 12 percent done.
STS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.503491e-02	ci left: 8.650892e-01	ci right 8.782934e-01	k: 8718	n:10000
Cons ci ratio: 1.438252e-02	ci left: 8.749018e-01	ci right 8.876752e-01	k: 8814	n:10000
KS ci ratio: 2.623654e-02	ci left: 6.814356e-01	ci right 6.996533e-01	k: 6906	n:10000
STS   10000 perm   2 sec   (5158 perm/sec)   p_kst 6.906000e-01   p_cons 8.814000e-01   p_joint 8.718000e-01

Outputting figure to mutsig2_images.part000000000168/STS.6_1792_10000_0.6906_0.8814_0.8718.png
                gene_name: STS
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 15 percent done.
STAT4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.065542e-01	ci left: 1.128131e-01	ci right 1.256096e-01	k: 1191	n:10000
Cons ci ratio: 3.325900e-01	ci left: 1.142242e-02	ci right 1.606722e-02	k: 136	n:10000
KS ci ratio: 1.568038e-02	ci left: 8.551867e-01	ci right 8.688017e-01	k: 8621	n:10000
STAT4   10000 perm   2 sec   (5042 perm/sec)   p_kst 8.621000e-01   p_cons 1.360000e-02   p_joint 1.191000e-01

Joint ci ratio: 9.895639e-02	ci left: 6.913890e-02	ci right 7.638590e-02	k: 1454	n:20000
Cons ci ratio: 2.373881e-01	ci left: 1.185253e-02	ci right 1.509121e-02	k: 268	n:20000
KS ci ratio: 1.098408e-02	ci left: 8.594757e-01	ci right 8.690181e-01	k: 17286	n:20000
STAT4   20000 perm   4 sec   (4459 perm/sec)   p_kst 8.643000e-01   p_cons 1.340000e-02   p_joint 7.270000e-02

Joint ci ratio: 1.140274e-01	ci left: 3.573495e-02	ci right 4.008846e-02	k: 1136	n:30000
Cons ci ratio: 2.062269e-01	ci left: 1.067210e-02	ci right 1.315710e-02	k: 356	n:30000
KS ci ratio: 9.187449e-03	ci left: 8.545384e-01	ci right 8.624587e-01	k: 25756	n:30000
STAT4   30000 perm   7 sec   (4268 perm/sec)   p_kst 8.585333e-01   p_cons 1.186667e-02   p_joint 3.786667e-02

Joint ci ratio: 8.124298e-02	ci left: 5.276118e-02	ci right 5.725370e-02	k: 2199	n:40000
Cons ci ratio: 1.702833e-01	ci left: 1.196079e-02	ci right 1.421072e-02	k: 522	n:40000
KS ci ratio: 8.020492e-03	ci left: 8.531017e-01	ci right 8.599964e-01	k: 34263	n:40000
STAT4   40000 perm   10 sec   (4137 perm/sec)   p_kst 8.565750e-01   p_cons 1.305000e-02   p_joint 5.497500e-02

Joint ci ratio: 6.347043e-02	ci left: 6.862588e-02	ci right 7.314409e-02	k: 3543	n:50000
Cons ci ratio: 1.461698e-01	ci left: 1.314267e-02	ci right 1.523430e-02	k: 708	n:50000
KS ci ratio: 7.252770e-03	ci left: 8.507332e-01	ci right 8.569457e-01	k: 42693	n:50000
STAT4   50000 perm   12 sec   (4012 perm/sec)   p_kst 8.538600e-01   p_cons 1.416000e-02   p_joint 7.086000e-02

Joint ci ratio: 5.352167e-02	ci left: 7.986597e-02	ci right 8.427455e-02	k: 4923	n:60000
Cons ci ratio: 1.493586e-01	ci left: 1.050171e-02	ci right 1.221271e-02	k: 680	n:60000
KS ci ratio: 6.680211e-03	ci left: 8.487470e-01	ci right 8.544523e-01	k: 51097	n:60000
STAT4   60000 perm   15 sec   (3904 perm/sec)   p_kst 8.516167e-01   p_cons 1.133333e-02   p_joint 8.205000e-02

Joint ci ratio: 4.834080e-02	ci left: 8.379183e-02	ci right 8.795686e-02	k: 6010	n:70000
Cons ci ratio: 1.378849e-01	ci left: 1.062673e-02	ci right 1.221416e-02	k: 798	n:70000
KS ci ratio: 6.179469e-03	ci left: 8.491750e-01	ci right 8.544529e-01	k: 59628	n:70000
STAT4   70000 perm   18 sec   (3811 perm/sec)   p_kst 8.518286e-01   p_cons 1.140000e-02   p_joint 8.585714e-02

Joint ci ratio: 5.068679e-02	ci left: 6.779660e-02	ci right 7.133469e-02	k: 5564	n:80000
Cons ci ratio: 1.303690e-01	ci left: 1.044599e-02	ci right 1.191478e-02	k: 893	n:80000
KS ci ratio: 5.776139e-03	ci left: 8.495329e-01	ci right 8.544665e-01	k: 68161	n:80000
STAT4   80000 perm   21 sec   (3731 perm/sec)   p_kst 8.520125e-01   p_cons 1.116250e-02   p_joint 6.955000e-02

Joint ci ratio: 5.106830e-02	ci left: 5.987315e-02	ci right 6.302185e-02	k: 5529	n:90000
Cons ci ratio: 1.228977e-01	ci left: 1.049039e-02	ci right 1.187472e-02	k: 1005	n:90000
KS ci ratio: 5.452053e-03	ci left: 8.493836e-01	ci right 8.540382e-01	k: 76655	n:90000
STAT4   90000 perm   25 sec   (3646 perm/sec)   p_kst 8.517222e-01   p_cons 1.116667e-02   p_joint 6.143333e-02

Joint ci ratio: 5.009459e-02	ci left: 5.625275e-02	ci right 5.915297e-02	k: 5769	n:100000
Cons ci ratio: 1.167908e-01	ci left: 1.048898e-02	ci right 1.179960e-02	k: 1113	n:100000
KS ci ratio: 5.162067e-03	ci left: 8.500052e-01	ci right 8.544143e-01	k: 85222	n:100000
STAT4   100000 perm   28 sec   (3568 perm/sec)   p_kst 8.522200e-01   p_cons 1.113000e-02   p_joint 5.769000e-02

Joint ci ratio: 5.238154e-02	ci left: 4.717504e-02	ci right 4.972156e-02	k: 5328	n:110000
Cons ci ratio: 1.116510e-01	ci left: 1.046271e-02	ci right 1.170872e-02	k: 1218	n:110000
KS ci ratio: 4.929148e-03	ci left: 8.497323e-01	ci right 8.539401e-01	k: 93703	n:110000
STAT4   110000 perm   31 sec   (3493 perm/sec)   p_kst 8.518455e-01   p_cons 1.107273e-02   p_joint 4.843636e-02

Joint ci ratio: 4.960891e-02	ci left: 4.823006e-02	ci right 5.069177e-02	k: 5934	n:120000
Cons ci ratio: 1.072990e-01	ci left: 1.040943e-02	ci right 1.159772e-02	k: 1319	n:120000
KS ci ratio: 4.721236e-03	ci left: 8.497184e-01	ci right 8.537479e-01	k: 102209	n:120000
STAT4   120000 perm   35 sec   (3417 perm/sec)   p_kst 8.517417e-01   p_cons 1.099167e-02   p_joint 4.945000e-02

Joint ci ratio: 5.017044e-02	ci left: 4.372741e-02	ci right 4.598526e-02	k: 5830	n:130000
Cons ci ratio: 1.028715e-01	ci left: 1.047758e-02	ci right 1.162131e-02	k: 1435	n:130000
KS ci ratio: 4.531925e-03	ci left: 8.500271e-01	ci right 8.538957e-01	k: 110756	n:130000
STAT4   130000 perm   39 sec   (3350 perm/sec)   p_kst 8.519692e-01   p_cons 1.103846e-02   p_joint 4.484615e-02

Joint ci ratio: 4.833957e-02	ci left: 4.377875e-02	ci right 4.595444e-02	k: 6280	n:140000
Cons ci ratio: 9.901504e-02	ci left: 1.052292e-02	ci right 1.162604e-02	k: 1549	n:140000
KS ci ratio: 4.369133e-03	ci left: 8.499783e-01	ci right 8.537071e-01	k: 119259	n:140000
STAT4   140000 perm   42 sec   (3296 perm/sec)   p_kst 8.518500e-01   p_cons 1.106429e-02   p_joint 4.485714e-02

Outputting figure to mutsig2_images.part000000000168/STAT4.5_2339_140000_0.85185_0.011064_0.044857.png
                gene_name: STAT4
               theta_stop: 0.099 
                    nperm: 140000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.011 
      ci_cons_bounds_left: 0.011 
     ci_cons_bounds_right: 0.012 
                  p_joint: 0.045 
     ci_joint_bounds_left: 0.044 
    ci_joint_bounds_right: 0.046 

Current progress: 17 percent done.
STK10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.336069e-02	ci left: 5.701540e-01	ci right 5.895994e-01	k: 5799	n:10000
Cons ci ratio: 1.862176e-02	ci left: 8.081622e-01	ci right 8.234533e-01	k: 8159	n:10000
KS ci ratio: 4.179607e-02	ci left: 4.580809e-01	ci right 4.777378e-01	k: 4679	n:10000
STK10   10000 perm   2 sec   (4437 perm/sec)   p_kst 4.679000e-01   p_cons 8.159000e-01   p_joint 5.799000e-01

Outputting figure to mutsig2_images.part000000000168/STK10.5_2983_10000_0.4679_0.8159_0.5799.png
                gene_name: STK10
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 20 percent done.
STK32B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.239779e-02	ci left: 2.184255e-01	ci right 2.349340e-01	k: 2266	n:10000
Cons ci ratio: 1.846975e-01	ci left: 3.910770e-02	ci right 4.716118e-02	k: 430	n:10000
KS ci ratio: 4.178768e-02	ci left: 4.581808e-01	ci right 4.778379e-01	k: 4680	n:10000
STK32B   10000 perm   2 sec   (5588 perm/sec)   p_kst 4.680000e-01   p_cons 4.300000e-02   p_joint 2.266000e-01

Joint ci ratio: 6.968580e-02	ci left: 1.318193e-01	ci right 1.413866e-01	k: 2731	n:20000
Cons ci ratio: 1.311613e-01	ci left: 3.993964e-02	ci right 4.559426e-02	k: 854	n:20000
KS ci ratio: 2.918248e-02	ci left: 4.673088e-01	ci right 4.811986e-01	k: 9485	n:20000
STK32B   20000 perm   4 sec   (4772 perm/sec)   p_kst 4.742500e-01   p_cons 4.270000e-02   p_joint 1.365500e-01

Joint ci ratio: 5.228475e-02	ci left: 1.536584e-01	ci right 1.619413e-01	k: 4733	n:30000
Cons ci ratio: 1.075102e-01	ci left: 4.014760e-02	ci right 4.474154e-02	k: 1272	n:30000
KS ci ratio: 2.365592e-02	ci left: 4.722000e-01	ci right 4.835376e-01	k: 14336	n:30000
STK32B   30000 perm   7 sec   (4539 perm/sec)   p_kst 4.778667e-01   p_cons 4.240000e-02   p_joint 1.577667e-01

Joint ci ratio: 4.926006e-02	ci left: 1.332979e-01	ci right 1.400549e-01	k: 5466	n:40000
Cons ci ratio: 8.852901e-02	ci left: 4.465275e-02	ci right 4.881337e-02	k: 1868	n:40000
KS ci ratio: 2.107136e-02	ci left: 4.589532e-01	ci right 4.687521e-01	k: 18554	n:40000
STK32B   40000 perm   9 sec   (4392 perm/sec)   p_kst 4.638500e-01   p_cons 4.670000e-02   p_joint 1.366500e-01

Outputting figure to mutsig2_images.part000000000168/STK32B.5_1293_40000_0.46385_0.0467_0.13665.png
                gene_name: STK32B
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.047 
      ci_cons_bounds_left: 0.045 
     ci_cons_bounds_right: 0.049 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 22 percent done.
STK36
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.941074e-02	ci left: 7.951683e-01	ci right 8.108548e-01	k: 8031	n:10000
KS ci ratio: 2.502725e-02	ci left: 7.013997e-01	ci right 7.192776e-01	k: 7104	n:10000
STK36   10000 perm   2 sec   (4366 perm/sec)   p_kst 7.104000e-01   p_cons 8.031000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000168/STK36.5_4052_10000_0.7104_0.8031_1.png
                gene_name: STK36
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 24 percent done.
STIL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.359749e-02	ci left: 7.252223e-01	ci right 7.426412e-01	k: 7340	n:10000
Cons ci ratio: 2.454149e-02	ci left: 7.094718e-01	ci right 7.272009e-01	k: 7184	n:10000
KS ci ratio: 3.277544e-02	ci left: 5.787803e-01	ci right 5.981681e-01	k: 5885	n:10000
STIL   10000 perm   2 sec   (4403 perm/sec)   p_kst 5.885000e-01   p_cons 7.184000e-01   p_joint 7.340000e-01

Outputting figure to mutsig2_images.part000000000168/STIL.4_3931_10000_0.5885_0.7184_0.734.png
                gene_name: STIL
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.74 

Current progress: 27 percent done.
STK38
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.458093e-01	ci left: 6.246605e-02	ci right 7.238775e-02	k: 673	n:10000
Cons ci ratio: 5.140488e-02	ci left: 3.581397e-01	ci right 3.771375e-01	k: 3676	n:10000
KS ci ratio: 1.938045e-01	ci left: 3.548103e-02	ci right 4.319029e-02	k: 392	n:10000
STK38   10000 perm   2 sec   (5613 perm/sec)   p_kst 3.920000e-02   p_cons 3.676000e-01   p_joint 6.730000e-02

Joint ci ratio: 1.310813e-01	ci left: 3.998807e-02	ci right 4.564582e-02	k: 855	n:20000
Cons ci ratio: 3.637597e-02	ci left: 3.606137e-01	ci right 3.740249e-01	k: 7346	n:20000
KS ci ratio: 1.391770e-01	ci left: 3.548919e-02	ci right 4.084615e-02	k: 762	n:20000
STK38   20000 perm   4 sec   (4861 perm/sec)   p_kst 3.810000e-02   p_cons 3.673000e-01   p_joint 4.275000e-02

Joint ci ratio: 1.170009e-01	ci left: 3.395273e-02	ci right 3.820439e-02	k: 1081	n:30000
Cons ci ratio: 2.968697e-02	ci left: 3.620740e-01	ci right 3.730184e-01	k: 11026	n:30000
KS ci ratio: 1.127453e-01	ci left: 3.654551e-02	ci right 4.094439e-02	k: 1161	n:30000
STK38   30000 perm   7 sec   (4559 perm/sec)   p_kst 3.870000e-02   p_cons 3.675333e-01   p_joint 3.603333e-02

Joint ci ratio: 7.418377e-02	ci left: 6.282433e-02	ci right 6.768902e-02	k: 2609	n:40000
Cons ci ratio: 2.573548e-02	ci left: 3.623487e-01	ci right 3.718206e-01	k: 14683	n:40000
KS ci ratio: 9.814697e-02	ci left: 3.646471e-02	ci right 4.025268e-02	k: 1533	n:40000
STK38   40000 perm   9 sec   (4400 perm/sec)   p_kst 3.832500e-02   p_cons 3.670750e-01   p_joint 6.522500e-02

Outputting figure to mutsig2_images.part000000000168/STK38.4_1450_40000_0.038325_0.36707_0.065225.png
                gene_name: STK38
               theta_stop: 0.098 
                    nperm: 40000 
                     p_ks: 0.038 
        ci_ks_bounds_left: 0.036 
       ci_ks_bounds_right: 0.040 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.065 
     ci_joint_bounds_left: 0.063 
    ci_joint_bounds_right: 0.068 

Current progress: 29 percent done.
STON2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.005264e-02	ci left: 1.856005e-01	ci right 2.011785e-01	k: 1933	n:10000
Cons ci ratio: 8.964901e-02	ci left: 1.532571e-01	ci right 1.677413e-01	k: 1604	n:10000
KS ci ratio: 5.562896e-02	ci left: 3.224721e-01	ci right 3.410260e-01	k: 3317	n:10000
STON2   10000 perm   2 sec   (4973 perm/sec)   p_kst 3.317000e-01   p_cons 1.604000e-01   p_joint 1.933000e-01

Outputting figure to mutsig2_images.part000000000168/STON2.4_2736_10000_0.3317_0.1604_0.1933.png
                gene_name: STON2
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 32 percent done.
STOX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.375026e-02	ci left: 1.721207e-01	ci right 1.872663e-01	k: 1796	n:10000
Cons ci ratio: 5.616004e-02	ci left: 3.183032e-01	ci right 3.367974e-01	k: 3275	n:10000
KS ci ratio: 1.024951e-01	ci left: 1.210221e-01	ci right 1.341957e-01	k: 1275	n:10000
STOX2   10000 perm   2 sec   (5162 perm/sec)   p_kst 1.275000e-01   p_cons 3.275000e-01   p_joint 1.796000e-01

Joint ci ratio: 5.485427e-02	ci left: 1.977903e-01	ci right 2.089961e-01	k: 4067	n:20000
Cons ci ratio: 3.816757e-02	ci left: 3.386586e-01	ci right 3.518864e-01	k: 6905	n:20000
KS ci ratio: 7.380830e-02	ci left: 1.190194e-01	ci right 1.281903e-01	k: 2471	n:20000
STOX2   20000 perm   4 sec   (4528 perm/sec)   p_kst 1.235500e-01   p_cons 3.452500e-01   p_joint 2.033500e-01

Outputting figure to mutsig2_images.part000000000168/STOX2.4_2797_20000_0.12355_0.34525_0.20335.png
                gene_name: STOX2
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 34 percent done.
STRN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.699905e-02	ci left: 3.118529e-01	ci right 3.302514e-01	k: 3210	n:10000
Cons ci ratio: 9.298919e-03	ci left: 9.422194e-01	ci right 9.511181e-01	k: 9468	n:10000
KS ci ratio: 7.874268e-02	ci left: 1.907209e-01	ci right 2.064550e-01	k: 1985	n:10000
STRN   10000 perm   2 sec   (4944 perm/sec)   p_kst 1.985000e-01   p_cons 9.468000e-01   p_joint 3.210000e-01

Outputting figure to mutsig2_images.part000000000168/STRN.4_2415_10000_0.1985_0.9468_0.321.png
                gene_name: STRN
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 37 percent done.
STARD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.177474e-02	ci left: 7.557537e-01	ci right 7.724921e-01	k: 7642	n:10000
Cons ci ratio: 4.941957e-02	ci left: 3.765422e-01	ci right 3.957242e-01	k: 3861	n:10000
KS ci ratio: 2.232405e-02	ci left: 7.465480e-01	ci right 7.635031e-01	k: 7551	n:10000
STARD4   10000 perm   2 sec   (6430 perm/sec)   p_kst 7.551000e-01   p_cons 3.861000e-01   p_joint 7.642000e-01

Outputting figure to mutsig2_images.part000000000168/STARD4.3_638_10000_0.7551_0.3861_0.7642.png
                gene_name: STARD4
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 39 percent done.
STC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.909237e-02	ci left: 4.914510e-01	ci right 5.111482e-01	k: 5013	n:10000
Cons ci ratio: 1.367889e-02	ci left: 8.852399e-01	ci right 8.975311e-01	k: 8915	n:10000
KS ci ratio: 9.069448e-02	ci left: 1.502147e-01	ci right 1.645855e-01	k: 1573	n:10000
STC1   10000 perm   2 sec   (6382 perm/sec)   p_kst 1.573000e-01   p_cons 8.915000e-01   p_joint 5.013000e-01

Outputting figure to mutsig2_images.part000000000168/STC1.3_760_10000_0.1573_0.8915_0.5013.png
                gene_name: STC1
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 41 percent done.
STC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.551311e-02	ci left: 4.160815e-01	ci right 4.355618e-01	k: 4258	n:10000
KS ci ratio: 1.277098e-02	ci left: 8.981605e-01	ci right 9.098029e-01	k: 9041	n:10000
STC2   10000 perm   2 sec   (5923 perm/sec)   p_kst 9.041000e-01   p_cons 4.258000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000168/STC2.3_925_10000_0.9041_0.4258_1.png
                gene_name: STC2
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 44 percent done.
STIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.947729e-02	ci left: 4.865527e-01	ci right 5.062494e-01	k: 4964	n:10000
KS ci ratio: 3.474977e-02	ci left: 5.501045e-01	ci right 5.696606e-01	k: 5599	n:10000
STIP1   10000 perm   2 sec   (5555 perm/sec)   p_kst 5.599000e-01   p_cons 4.964000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000168/STIP1.3_1688_10000_0.5599_0.4964_1.png
                gene_name: STIP1
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 46 percent done.
STK11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.854123e-02	ci left: 4.985503e-01	ci right 5.182448e-01	k: 5084	n:10000
Cons ci ratio: 1.320071e-02	ci left: 8.921069e-01	ci right 9.040601e-01	k: 8982	n:10000
KS ci ratio: 4.973370e-02	ci left: 3.735570e-01	ci right 3.927111e-01	k: 3831	n:10000
STK11   10000 perm   2 sec   (6189 perm/sec)   p_kst 3.831000e-01   p_cons 8.982000e-01   p_joint 5.084000e-01

Outputting figure to mutsig2_images.part000000000168/STK11.3_1338_10000_0.3831_0.8982_0.5084.png
                gene_name: STK11
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 49 percent done.
STK17B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.714328e-02	ci left: 2.455898e-01	ci right 2.627536e-01	k: 2541	n:10000
KS ci ratio: 1.894940e-02	ci left: 8.027803e-01	ci right 8.182384e-01	k: 8106	n:10000
STK17B   10000 perm   1 sec   (6860 perm/sec)   p_kst 8.106000e-01   p_cons 2.541000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000168/STK17B.3_1147_10000_0.8106_0.2541_1.png
                gene_name: STK17B
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 51 percent done.
STK33
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.502554e-02	ci left: 5.461967e-01	ci right 5.657707e-01	k: 5560	n:10000
KS ci ratio: 1.432059e-02	ci left: 8.758224e-01	ci right 8.885540e-01	k: 8823	n:10000
STK33   10000 perm   2 sec   (5866 perm/sec)   p_kst 8.823000e-01   p_cons 5.560000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000168/STK33.3_1593_10000_0.8823_0.556_1.png
                gene_name: STK33
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 54 percent done.
STRAP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.671176e-02	ci left: 1.342342e-01	ci right 1.479756e-01	k: 1410	n:10000
Cons ci ratio: 1.654673e-02	ci left: 8.416271e-01	ci right 8.557691e-01	k: 8488	n:10000
KS ci ratio: 1.332907e-01	ci left: 7.427098e-02	ci right 8.497542e-02	k: 795	n:10000
STRAP   10000 perm   2 sec   (5910 perm/sec)   p_kst 7.950000e-02   p_cons 8.488000e-01   p_joint 1.410000e-01

Joint ci ratio: 7.888301e-02	ci left: 1.055482e-01	ci right 1.142656e-01	k: 2197	n:20000
Cons ci ratio: 1.176105e-02	ci left: 8.423915e-01	ci right 8.524073e-01	k: 16949	n:20000
KS ci ratio: 9.457581e-02	ci left: 7.534699e-02	ci right 8.287592e-02	k: 1581	n:20000
STRAP   20000 perm   4 sec   (5000 perm/sec)   p_kst 7.905000e-02   p_cons 8.474500e-01   p_joint 1.098500e-01

Outputting figure to mutsig2_images.part000000000168/STRAP.3_1093_20000_0.07905_0.84745_0.10985.png
                gene_name: STRAP
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.079 
        ci_ks_bounds_left: 0.075 
       ci_ks_bounds_right: 0.083 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 56 percent done.
STRN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.230716e-01	ci left: 8.640461e-02	ci right 9.783428e-02	k: 920	n:10000
Cons ci ratio: 7.130045e-02	ci left: 2.237558e-01	ci right 2.404006e-01	k: 2320	n:10000
KS ci ratio: 1.145032e-01	ci left: 9.886244e-02	ci right 1.109688e-01	k: 1048	n:10000
STRN3   10000 perm   2 sec   (5668 perm/sec)   p_kst 1.048000e-01   p_cons 2.320000e-01   p_joint 9.200000e-02

Joint ci ratio: 7.103171e-02	ci left: 1.274361e-01	ci right 1.368712e-01	k: 2642	n:20000
Cons ci ratio: 5.115703e-02	ci left: 2.211105e-01	ci right 2.327690e-01	k: 4538	n:20000
KS ci ratio: 8.098908e-02	ci left: 1.005877e-01	ci right 1.091276e-01	k: 2096	n:20000
STRN3   20000 perm   4 sec   (4874 perm/sec)   p_kst 1.048000e-01   p_cons 2.269000e-01   p_joint 1.321000e-01

Outputting figure to mutsig2_images.part000000000168/STRN3.3_2466_20000_0.1048_0.2269_0.1321.png
                gene_name: STRN3
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 59 percent done.
STAT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.194625e-01	ci left: 9.136461e-02	ci right 1.030712e-01	k: 971	n:10000
KS ci ratio: 8.467069e-02	ci left: 1.689744e-01	ci right 1.840145e-01	k: 1764	n:10000
STAT1   10000 perm   2 sec   (5222 perm/sec)   p_kst 1.764000e-01   p_cons 9.710000e-02   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 8.471597e-02	ci left: 9.258877e-02	ci right 1.008289e-01	k: 1933	n:20000
KS ci ratio: 5.973855e-02	ci left: 1.718315e-01	ci right 1.824626e-01	k: 3542	n:20000
STAT1   20000 perm   4 sec   (4638 perm/sec)   p_kst 1.771000e-01   p_cons 9.665000e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000168/STAT1.2_2349_20000_0.1771_0.09665_1.png
                gene_name: STAT1
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.097 
      ci_cons_bounds_left: 0.093 
     ci_cons_bounds_right: 0.10 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 61 percent done.
STAT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.120495e-02	ci left: 4.651709e-01	ci right 4.848436e-01	k: 4750	n:10000
Cons ci ratio: 9.372405e-03	ci left: 9.413886e-01	ci right 9.503494e-01	k: 9460	n:10000
KS ci ratio: 1.334730e-01	ci left: 7.407714e-02	ci right 8.476939e-02	k: 793	n:10000
STAT3   10000 perm   2 sec   (5391 perm/sec)   p_kst 7.930000e-02   p_cons 9.460000e-01   p_joint 4.750000e-01

Joint ci ratio: 3.052411e-02	ci left: 4.449850e-01	ci right 4.588290e-01	k: 9038	n:20000
Cons ci ratio: 6.705499e-03	ci left: 9.414934e-01	ci right 9.478765e-01	k: 18895	n:20000
KS ci ratio: 9.706290e-02	ci left: 7.172876e-02	ci right 7.909525e-02	k: 1507	n:20000
STAT3   20000 perm   4 sec   (4697 perm/sec)   p_kst 7.535000e-02   p_cons 9.447500e-01   p_joint 4.519000e-01

Outputting figure to mutsig2_images.part000000000168/STAT3.2_2405_20000_0.07535_0.94475_0.4519.png
                gene_name: STAT3
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.075 
        ci_ks_bounds_left: 0.072 
       ci_ks_bounds_right: 0.079 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 63 percent done.
STAT5A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.556068e-02	ci left: 5.386835e-01	ci right 5.582883e-01	k: 5485	n:10000
KS ci ratio: 4.216718e-02	ci left: 4.536882e-01	ci right 4.733331e-01	k: 4635	n:10000
STAT5A   10000 perm   2 sec   (5829 perm/sec)   p_kst 4.635000e-01   p_cons 5.485000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000168/STAT5A.2_2457_10000_0.4635_0.5485_1.png
                gene_name: STAT5A
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 66 percent done.
STAT6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.255266e-02	ci left: 5.820912e-01	ci right 6.014553e-01	k: 5918	n:10000
Cons ci ratio: 2.905383e-02	ci left: 6.359324e-01	ci right 6.547828e-01	k: 6454	n:10000
KS ci ratio: 5.806165e-02	ci left: 3.039169e-01	ci right 3.221921e-01	k: 3130	n:10000
STAT6   10000 perm   2 sec   (5595 perm/sec)   p_kst 3.130000e-01   p_cons 6.454000e-01   p_joint 5.918000e-01

Outputting figure to mutsig2_images.part000000000168/STAT6.2_2628_10000_0.313_0.6454_0.5918.png
                gene_name: STAT6
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 68 percent done.
STAU2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.624798e-02	ci left: 5.291699e-01	ci right 5.488074e-01	k: 5390	n:10000
Cons ci ratio: 1.127142e-02	ci left: 9.183224e-01	ci right 9.288293e-01	k: 9237	n:10000
KS ci ratio: 3.624798e-02	ci left: 5.291699e-01	ci right 5.488074e-01	k: 5390	n:10000
STAU2   10000 perm   2 sec   (6032 perm/sec)   p_kst 5.390000e-01   p_cons 9.237000e-01   p_joint 5.390000e-01

Outputting figure to mutsig2_images.part000000000168/STAU2.2_1907_10000_0.539_0.9237_0.539.png
                gene_name: STAU2
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 71 percent done.
STEAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.851468e-01	ci left: 3.891660e-02	ci right 4.695241e-02	k: 428	n:10000
Cons ci ratio: 2.022577e-01	ci left: 3.252956e-02	ci right 3.994377e-02	k: 361	n:10000
KS ci ratio: 3.960612e-01	ci left: 7.782754e-03	ci right 1.171078e-02	k: 96	n:10000
STEAP1   10000 perm   2 sec   (6535 perm/sec)   p_kst 9.600000e-03   p_cons 3.610000e-02   p_joint 4.280000e-02

Joint ci ratio: 1.315637e-01	ci left: 3.969753e-02	ci right 4.533646e-02	k: 849	n:20000
Cons ci ratio: 1.470737e-01	ci left: 3.177235e-02	ci right 3.686421e-02	k: 685	n:20000
KS ci ratio: 2.697250e-01	ci left: 9.040547e-03	ci right 1.190446e-02	k: 208	n:20000
STEAP1   20000 perm   4 sec   (5575 perm/sec)   p_kst 1.040000e-02   p_cons 3.425000e-02   p_joint 4.245000e-02

Joint ci ratio: 1.518392e-01	ci left: 2.008103e-02	ci right 2.341249e-02	k: 651	n:30000
Cons ci ratio: 1.194862e-01	ci left: 3.256037e-02	ci right 3.673038e-02	k: 1038	n:30000
KS ci ratio: 2.189992e-01	ci left: 9.409021e-03	ci right 1.175388e-02	k: 316	n:30000
STEAP1   30000 perm   6 sec   (5270 perm/sec)   p_kst 1.053333e-02   p_cons 3.460000e-02   p_joint 2.170000e-02

Joint ci ratio: 1.303773e-01	ci left: 2.065741e-02	ci right 2.356254e-02	k: 883	n:40000
Cons ci ratio: 1.045517e-01	ci left: 3.217228e-02	ci right 3.574580e-02	k: 1357	n:40000
KS ci ratio: 1.909577e-01	ci left: 9.428988e-03	ci right 1.144304e-02	k: 416	n:40000
STEAP1   40000 perm   8 sec   (5060 perm/sec)   p_kst 1.040000e-02   p_cons 3.392500e-02   p_joint 2.207500e-02

Joint ci ratio: 1.147166e-01	ci left: 2.150942e-02	ci right 2.414639e-02	k: 1140	n:50000
Cons ci ratio: 9.347133e-02	ci left: 3.238949e-02	ci right 3.558491e-02	k: 1698	n:50000
KS ci ratio: 1.705091e-01	ci left: 9.567600e-03	ci right 1.136991e-02	k: 522	n:50000
STEAP1   50000 perm   10 sec   (4900 perm/sec)   p_kst 1.044000e-02   p_cons 3.396000e-02   p_joint 2.280000e-02

Joint ci ratio: 1.389914e-01	ci left: 1.217329e-02	ci right 1.400759e-02	k: 784	n:60000
Cons ci ratio: 8.532306e-02	ci left: 3.253149e-02	ci right 3.544715e-02	k: 2038	n:60000
KS ci ratio: 1.557283e-01	ci left: 9.635717e-03	ci right 1.127882e-02	k: 626	n:60000
STEAP1   60000 perm   13 sec   (4765 perm/sec)   p_kst 1.043333e-02   p_cons 3.396667e-02   p_joint 1.306667e-02

Joint ci ratio: 1.295318e-01	ci left: 1.207716e-02	ci right 1.376358e-02	k: 903	n:70000
Cons ci ratio: 7.925002e-02	ci left: 3.243145e-02	ci right 3.512166e-02	k: 2363	n:70000
KS ci ratio: 1.451320e-01	ci left: 9.565265e-03	ci right 1.107574e-02	k: 721	n:70000
STEAP1   70000 perm   15 sec   (4614 perm/sec)   p_kst 1.030000e-02   p_cons 3.375714e-02   p_joint 1.290000e-02

Joint ci ratio: 1.201766e-01	ci left: 1.233567e-02	ci right 1.392493e-02	k: 1049	n:80000
Cons ci ratio: 7.462932e-02	ci left: 3.209196e-02	ci right 3.459203e-02	k: 2666	n:80000
KS ci ratio: 1.353567e-01	ci left: 9.672315e-03	ci right 1.108853e-02	k: 829	n:80000
STEAP1   80000 perm   18 sec   (4486 perm/sec)   p_kst 1.036250e-02   p_cons 3.332500e-02   p_joint 1.311250e-02

Joint ci ratio: 1.137067e-01	ci left: 1.229173e-02	ci right 1.378435e-02	k: 1172	n:90000
Cons ci ratio: 7.016041e-02	ci left: 3.234485e-02	ci right 3.470757e-02	k: 3016	n:90000
KS ci ratio: 1.283643e-01	ci left: 9.596849e-03	ci right 1.092389e-02	k: 922	n:90000
STEAP1   90000 perm   21 sec   (4376 perm/sec)   p_kst 1.024444e-02   p_cons 3.351111e-02   p_joint 1.302222e-02

Joint ci ratio: 1.396291e-01	ci left: 7.273718e-03	ci right 8.375117e-03	k: 781	n:100000
Cons ci ratio: 6.632724e-02	ci left: 3.262944e-02	ci right 3.487771e-02	k: 3374	n:100000
KS ci ratio: 1.211554e-01	ci left: 9.731957e-03	ci right 1.099669e-02	k: 1035	n:100000
STEAP1   100000 perm   24 sec   (4254 perm/sec)   p_kst 1.035000e-02   p_cons 3.374000e-02   p_joint 7.810000e-03

Joint ci ratio: 1.333031e-01	ci left: 7.279800e-03	ci right 8.328219e-03	k: 857	n:110000
Cons ci ratio: 6.352892e-02	ci left: 3.239071e-02	ci right 3.452489e-02	k: 3679	n:110000
KS ci ratio: 1.152416e-01	ci left: 9.808878e-03	ci right 1.101714e-02	k: 1144	n:110000
STEAP1   110000 perm   26 sec   (4172 perm/sec)   p_kst 1.040000e-02   p_cons 3.344545e-02   p_joint 7.790909e-03

Joint ci ratio: 1.272858e-01	ci left: 7.342293e-03	ci right 8.348377e-03	k: 940	n:120000
Cons ci ratio: 6.093076e-02	ci left: 3.232483e-02	ci right 3.436447e-02	k: 4000	n:120000
KS ci ratio: 1.100284e-01	ci left: 9.890441e-03	ci right 1.105007e-02	k: 1255	n:120000
STEAP1   120000 perm   29 sec   (4095 perm/sec)   p_kst 1.045833e-02   p_cons 3.333333e-02   p_joint 7.833333e-03

Joint ci ratio: 1.224386e-01	ci left: 7.343860e-03	ci right 8.309058e-03	k: 1016	n:130000
Cons ci ratio: 5.864838e-02	ci left: 3.224784e-02	ci right 3.420382e-02	k: 4318	n:130000
KS ci ratio: 1.058561e-01	ci left: 9.885586e-03	ci right 1.099795e-02	k: 1356	n:130000
STEAP1   130000 perm   32 sec   (4019 perm/sec)   p_kst 1.043077e-02   p_cons 3.321538e-02   p_joint 7.815385e-03

Joint ci ratio: 1.179431e-01	ci left: 7.366626e-03	ci right 8.296789e-03	k: 1095	n:140000
Cons ci ratio: 5.672495e-02	ci left: 3.204924e-02	ci right 3.392731e-02	k: 4617	n:140000
KS ci ratio: 1.020897e-01	ci left: 9.889101e-03	ci right 1.095989e-02	k: 1458	n:140000
STEAP1   140000 perm   36 sec   (3937 perm/sec)   p_kst 1.041429e-02   p_cons 3.297857e-02   p_joint 7.821429e-03

Joint ci ratio: 1.565983e-01	ci left: 3.834156e-03	ci right 4.491904e-03	k: 623	n:150000
Cons ci ratio: 5.493863e-02	ci left: 3.192408e-02	ci right 3.373404e-02	k: 4923	n:150000
KS ci ratio: 9.882676e-02	ci left: 9.866741e-03	ci right 1.089898e-02	k: 1556	n:150000
STEAP1   150000 perm   39 sec   (3862 perm/sec)   p_kst 1.037333e-02   p_cons 3.282000e-02   p_joint 4.153333e-03

Joint ci ratio: 1.512383e-01	ci left: 3.864946e-03	ci right 4.503227e-03	k: 668	n:160000
Cons ci ratio: 5.312756e-02	ci left: 3.203133e-02	ci right 3.378565e-02	k: 5264	n:160000
KS ci ratio: 9.536422e-02	ci left: 9.951388e-03	ci right 1.095397e-02	k: 1671	n:160000
STEAP1   160000 perm   42 sec   (3791 perm/sec)   p_kst 1.044375e-02   p_cons 3.290000e-02   p_joint 4.175000e-03

Joint ci ratio: 1.059481e-01	ci left: 7.564811e-03	ci right 8.416802e-03	k: 1357	n:170000
Cons ci ratio: 5.146081e-02	ci left: 3.215586e-02	ci right 3.386011e-02	k: 5610	n:170000
KS ci ratio: 9.216367e-02	ci left: 1.004388e-02	ci right 1.101998e-02	k: 1789	n:170000
STEAP1   170000 perm   46 sec   (3722 perm/sec)   p_kst 1.052353e-02   p_cons 3.300000e-02   p_joint 7.982353e-03

Joint ci ratio: 1.412407e-01	ci left: 3.960064e-03	ci right 4.567184e-03	k: 766	n:180000
Cons ci ratio: 5.003732e-02	ci left: 3.214658e-02	ci right 3.380184e-02	k: 5934	n:180000
KS ci ratio: 8.919425e-02	ci left: 1.014288e-02	ci right 1.109520e-02	k: 1910	n:180000
STEAP1   180000 perm   49 sec   (3648 perm/sec)   p_kst 1.061111e-02   p_cons 3.296667e-02   p_joint 4.255556e-03

Joint ci ratio: 1.372704e-01	ci left: 3.980234e-03	ci right 4.571890e-03	k: 811	n:190000
Cons ci ratio: 4.865348e-02	ci left: 3.223247e-02	ci right 3.384497e-02	k: 6276	n:190000
KS ci ratio: 8.679720e-02	ci left: 1.015982e-02	ci right 1.108678e-02	k: 2017	n:190000
STEAP1   190000 perm   53 sec   (3582 perm/sec)   p_kst 1.061579e-02   p_cons 3.303158e-02   p_joint 4.268421e-03

Joint ci ratio: 1.338526e-01	ci left: 3.984101e-03	ci right 4.560413e-03	k: 853	n:200000
Cons ci ratio: 4.756456e-02	ci left: 3.206322e-02	ci right 3.363036e-02	k: 6568	n:200000
KS ci ratio: 8.490724e-02	ci left: 1.009704e-02	ci right 1.099723e-02	k: 2108	n:200000
STEAP1   200000 perm   57 sec   (3515 perm/sec)   p_kst 1.054000e-02   p_cons 3.284000e-02   p_joint 4.265000e-03

Joint ci ratio: 1.303861e-01	ci left: 4.006193e-03	ci right 4.569530e-03	k: 899	n:210000
Cons ci ratio: 4.638854e-02	ci left: 3.212233e-02	ci right 3.365250e-02	k: 6905	n:210000
KS ci ratio: 8.334639e-02	ci left: 9.989146e-03	ci right 1.086254e-02	k: 2188	n:210000
STEAP1   210000 perm   61 sec   (3454 perm/sec)   p_kst 1.041905e-02   p_cons 3.288095e-02   p_joint 4.280952e-03

Joint ci ratio: 1.275826e-01	ci left: 4.000044e-03	ci right 4.549507e-03	k: 939	n:220000
Cons ci ratio: 4.533126e-02	ci left: 3.212705e-02	ci right 3.362165e-02	k: 7231	n:220000
KS ci ratio: 8.148829e-02	ci left: 9.984722e-03	ci right 1.083734e-02	k: 2289	n:220000
STEAP1   220000 perm   65 sec   (3399 perm/sec)   p_kst 1.040455e-02   p_cons 3.286818e-02   p_joint 4.268182e-03

Joint ci ratio: 1.245701e-01	ci left: 4.019824e-03	ci right 4.558004e-03	k: 985	n:230000
Cons ci ratio: 4.435222e-02	ci left: 3.211882e-02	ci right 3.357994e-02	k: 7554	n:230000
KS ci ratio: 7.941422e-02	ci left: 1.006612e-02	ci right 1.090280e-02	k: 2410	n:230000
STEAP1   230000 perm   69 sec   (3347 perm/sec)   p_kst 1.047826e-02   p_cons 3.284348e-02   p_joint 4.282609e-03

Joint ci ratio: 1.222381e-01	ci left: 4.005775e-03	ci right 4.531308e-03	k: 1023	n:240000
Cons ci ratio: 4.331476e-02	ci left: 3.228476e-02	ci right 3.371822e-02	k: 7919	n:240000
KS ci ratio: 7.786464e-02	ci left: 1.004291e-02	ci right 1.086064e-02	k: 2507	n:240000
STEAP1   240000 perm   73 sec   (3298 perm/sec)   p_kst 1.044583e-02   p_cons 3.299583e-02   p_joint 4.262500e-03

Joint ci ratio: 1.196371e-01	ci left: 4.020101e-03	ci right 4.535496e-03	k: 1068	n:250000
Cons ci ratio: 4.255980e-02	ci left: 3.212107e-02	ci right 3.352179e-02	k: 8204	n:250000
KS ci ratio: 7.628409e-02	ci left: 1.005310e-02	ci right 1.085431e-02	k: 2612	n:250000
STEAP1   250000 perm   77 sec   (3250 perm/sec)   p_kst 1.044800e-02   p_cons 3.281600e-02   p_joint 4.272000e-03

Joint ci ratio: 1.168796e-01	ci left: 4.055837e-03	ci right 4.563002e-03	k: 1119	n:260000
Cons ci ratio: 4.174901e-02	ci left: 3.211104e-02	ci right 3.348401e-02	k: 8526	n:260000
KS ci ratio: 7.464354e-02	ci left: 1.010419e-02	ci right 1.089139e-02	k: 2728	n:260000
STEAP1   260000 perm   81 sec   (3202 perm/sec)   p_kst 1.049231e-02   p_cons 3.279231e-02   p_joint 4.303846e-03

Joint ci ratio: 1.154487e-01	ci left: 4.006306e-03	ci right 4.500725e-03	k: 1147	n:270000
Cons ci ratio: 4.096610e-02	ci left: 3.212767e-02	ci right 3.347498e-02	k: 8855	n:270000
KS ci ratio: 7.341808e-02	ci left: 1.006439e-02	ci right 1.083507e-02	k: 2820	n:270000
STEAP1   270000 perm   86 sec   (3156 perm/sec)   p_kst 1.044444e-02   p_cons 3.279630e-02   p_joint 4.248148e-03

Joint ci ratio: 1.131547e-01	ci left: 4.026284e-03	ci right 4.512637e-03	k: 1194	n:280000
Cons ci ratio: 4.020981e-02	ci left: 3.216808e-02	ci right 3.349161e-02	k: 9191	n:280000
KS ci ratio: 7.225104e-02	ci left: 1.002752e-02	ci right 1.078266e-02	k: 2912	n:280000
STEAP1   280000 perm   90 sec   (3113 perm/sec)   p_kst 1.040000e-02   p_cons 3.282500e-02   p_joint 4.264286e-03

Joint ci ratio: 1.113530e-01	ci left: 4.018152e-03	ci right 4.495287e-03	k: 1233	n:290000
Cons ci ratio: 3.957128e-02	ci left: 3.208297e-02	ci right 3.338156e-02	k: 9491	n:290000
KS ci ratio: 7.106628e-02	ci left: 1.001362e-02	ci right 1.075483e-02	k: 3010	n:290000
STEAP1   290000 perm   94 sec   (3071 perm/sec)   p_kst 1.037931e-02   p_cons 3.272759e-02   p_joint 4.251724e-03

Joint ci ratio: 1.093332e-01	ci left: 4.033317e-03	ci right 4.503006e-03	k: 1279	n:300000
Cons ci ratio: 3.890476e-02	ci left: 3.209615e-02	ci right 3.337290e-02	k: 9819	n:300000
KS ci ratio: 6.983588e-02	ci left: 1.003022e-02	ci right 1.075929e-02	k: 3117	n:300000
STEAP1   300000 perm   99 sec   (3027 perm/sec)   p_kst 1.039000e-02   p_cons 3.273000e-02   p_joint 4.263333e-03

Joint ci ratio: 1.073788e-01	ci left: 4.050716e-03	ci right 4.513465e-03	k: 1326	n:310000
Cons ci ratio: 3.823578e-02	ci left: 3.216618e-02	ci right 3.342322e-02	k: 10165	n:310000
KS ci ratio: 6.872110e-02	ci left: 1.003000e-02	ci right 1.074694e-02	k: 3219	n:310000
STEAP1   310000 perm   104 sec   (2986 perm/sec)   p_kst 1.038387e-02   p_cons 3.279032e-02   p_joint 4.277419e-03

Joint ci ratio: 7.773345e-02	ci left: 7.577776e-03	ci right 8.193686e-03	k: 2522	n:320000
Cons ci ratio: 3.758907e-02	ci left: 3.225058e-02	ci right 3.348915e-02	k: 10517	n:320000
KS ci ratio: 6.764777e-02	ci left: 1.003295e-02	ci right 1.073846e-02	k: 3322	n:320000
STEAP1   320000 perm   109 sec   (2947 perm/sec)   p_kst 1.038125e-02   p_cons 3.286563e-02   p_joint 7.881250e-03

Outputting figure to mutsig2_images.part000000000168/STEAP1.2_1036_320000_0.010381_0.032866_0.0078812.png
                gene_name: STEAP1
               theta_stop: 0.078 
                    nperm: 320000 
                     p_ks: 0.010 
        ci_ks_bounds_left: 0.010 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.033 
      ci_cons_bounds_left: 0.032 
     ci_cons_bounds_right: 0.033 
                  p_joint: 0.0079 
     ci_joint_bounds_left: 0.0076 
    ci_joint_bounds_right: 0.0082 

Current progress: 73 percent done.
STEAP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.489805e-02	ci left: 5.480002e-01	ci right 5.675661e-01	k: 5578	n:10000
Cons ci ratio: 2.181098e-02	ci left: 7.551466e-01	ci right 7.718996e-01	k: 7636	n:10000
KS ci ratio: 9.561004e-02	ci left: 1.369772e-01	ci right 1.508309e-01	k: 1438	n:10000
STEAP3   10000 perm   2 sec   (5961 perm/sec)   p_kst 1.438000e-01   p_cons 7.636000e-01   p_joint 5.578000e-01

Outputting figure to mutsig2_images.part000000000168/STEAP3.2_1517_10000_0.1438_0.7636_0.5578.png
                gene_name: STEAP3
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 76 percent done.
STK16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.944572e-02	ci left: 4.869525e-01	ci right 5.066494e-01	k: 4968	n:10000
Cons ci ratio: 1.874410e-01	ci left: 3.796147e-02	ci right 4.590818e-02	k: 418	n:10000
KS ci ratio: 3.830297e-02	ci left: 5.016506e-01	ci right 5.213427e-01	k: 5115	n:10000
STK16   10000 perm   1 sec   (6729 perm/sec)   p_kst 5.115000e-01   p_cons 4.180000e-02   p_joint 4.968000e-01

Joint ci ratio: 1.026566e-01	ci left: 6.445142e-02	ci right 7.147482e-02	k: 1358	n:20000
Cons ci ratio: 1.309216e-01	ci left: 4.008492e-02	ci right 4.574894e-02	k: 857	n:20000
KS ci ratio: 2.696458e-02	ci left: 5.067965e-01	ci right 5.206995e-01	k: 10275	n:20000
STK16   20000 perm   4 sec   (5644 perm/sec)   p_kst 5.137500e-01   p_cons 4.285000e-02   p_joint 6.790000e-02

Joint ci ratio: 8.532216e-02	ci left: 6.292191e-02	ci right 6.856255e-02	k: 1971	n:30000
Cons ci ratio: 1.090858e-01	ci left: 3.901127e-02	ci right 4.354478e-02	k: 1237	n:30000
KS ci ratio: 2.194149e-02	ci left: 5.097935e-01	ci right 5.211368e-01	k: 15464	n:30000
STK16   30000 perm   6 sec   (5281 perm/sec)   p_kst 5.154667e-01   p_cons 4.123333e-02   p_joint 6.570000e-02

Joint ci ratio: 7.055036e-02	ci left: 6.911662e-02	ci right 7.419577e-02	k: 2865	n:40000
Cons ci ratio: 9.476118e-02	ci left: 3.907768e-02	ci right 4.298931e-02	k: 1640	n:40000
KS ci ratio: 1.914495e-02	ci left: 5.068132e-01	ci right 5.166351e-01	k: 20469	n:40000
STK16   40000 perm   8 sec   (5079 perm/sec)   p_kst 5.117250e-01   p_cons 4.100000e-02   p_joint 7.162500e-02

Outputting figure to mutsig2_images.part000000000168/STK16.2_946_40000_0.51172_0.041_0.071625.png
                gene_name: STK16
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.041 
      ci_cons_bounds_left: 0.039 
     ci_cons_bounds_right: 0.043 
                  p_joint: 0.072 
     ci_joint_bounds_left: 0.069 
    ci_joint_bounds_right: 0.074 

Current progress: 78 percent done.
STK19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.125939e-01	ci left: 1.019814e-01	ci right 1.142479e-01	k: 1080	n:10000
Cons ci ratio: 1.550139e-01	ci left: 5.542402e-02	ci right 6.483425e-02	k: 600	n:10000
KS ci ratio: 7.393882e-02	ci left: 2.112229e-01	ci right 2.275409e-01	k: 2193	n:10000
STK19   10000 perm   2 sec   (6446 perm/sec)   p_kst 2.193000e-01   p_cons 6.000000e-02   p_joint 1.080000e-01

Joint ci ratio: 5.587333e-02	ci left: 1.919523e-01	ci right 2.030357e-01	k: 3949	n:20000
Cons ci ratio: 1.086552e-01	ci left: 5.777083e-02	ci right 6.445747e-02	k: 1221	n:20000
KS ci ratio: 5.206288e-02	ci left: 2.150674e-01	ci right 2.266139e-01	k: 4416	n:20000
STK19   20000 perm   4 sec   (5649 perm/sec)   p_kst 2.208000e-01   p_cons 6.105000e-02   p_joint 1.974500e-01

Joint ci ratio: 5.188193e-02	ci left: 1.557030e-01	ci right 1.640296e-01	k: 4795	n:30000
Cons ci ratio: 8.936817e-02	ci left: 5.756710e-02	ci right 6.298511e-02	k: 1807	n:30000
KS ci ratio: 4.245381e-02	ci left: 2.165800e-01	ci right 2.260074e-01	k: 6638	n:30000
STK19   30000 perm   6 sec   (5367 perm/sec)   p_kst 2.212667e-01   p_cons 6.023333e-02   p_joint 1.598333e-01

Outputting figure to mutsig2_images.part000000000168/STK19.2_1190_30000_0.22127_0.060233_0.15983.png
                gene_name: STK19
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.060 
      ci_cons_bounds_left: 0.058 
     ci_cons_bounds_right: 0.063 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.16 

Current progress: 80 percent done.
STK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.066371e-02	ci left: 4.717634e-01	ci right 4.914473e-01	k: 4816	n:10000
Cons ci ratio: 1.172054e-02	ci left: 9.124500e-01	ci right 9.233051e-01	k: 9180	n:10000
KS ci ratio: 6.784099e-02	ci left: 2.417346e-01	ci right 2.588111e-01	k: 2502	n:10000
STK3   10000 perm   2 sec   (6091 perm/sec)   p_kst 2.502000e-01   p_cons 9.180000e-01   p_joint 4.816000e-01

Outputting figure to mutsig2_images.part000000000168/STK3.2_1520_10000_0.2502_0.918_0.4816.png
                gene_name: STK3
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 83 percent done.
STK32C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.811321e-02	ci left: 2.402520e-01	ci right 2.572946e-01	k: 2487	n:10000
Cons ci ratio: 1.670282e-01	ci left: 4.782537e-02	ci right 5.663779e-02	k: 521	n:10000
KS ci ratio: 3.250553e-02	ci left: 5.827935e-01	ci right 6.021526e-01	k: 5925	n:10000
STK32C   10000 perm   2 sec   (6237 perm/sec)   p_kst 5.925000e-01   p_cons 5.210000e-02   p_joint 2.487000e-01

Joint ci ratio: 6.052902e-02	ci left: 1.680770e-01	ci right 1.786181e-01	k: 3466	n:20000
Cons ci ratio: 1.152266e-01	ci left: 5.153982e-02	ci right 5.789042e-02	k: 1093	n:20000
KS ci ratio: 2.304332e-02	ci left: 5.844491e-01	ci right 5.981243e-01	k: 11826	n:20000
STK32C   20000 perm   4 sec   (5138 perm/sec)   p_kst 5.913000e-01   p_cons 5.465000e-02   p_joint 1.733000e-01

Joint ci ratio: 4.447760e-02	ci left: 2.010719e-01	ci right 2.102519e-01	k: 6169	n:30000
Cons ci ratio: 9.420431e-02	ci left: 5.199044e-02	ci right 5.716291e-02	k: 1636	n:30000
KS ci ratio: 1.885799e-02	ci left: 5.846097e-01	ci right 5.957728e-01	k: 17706	n:30000
STK32C   30000 perm   6 sec   (4837 perm/sec)   p_kst 5.902000e-01   p_cons 5.453333e-02   p_joint 2.056333e-01

Outputting figure to mutsig2_images.part000000000168/STK32C.2_1509_30000_0.5902_0.054533_0.20563.png
                gene_name: STK32C
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.055 
      ci_cons_bounds_left: 0.052 
     ci_cons_bounds_right: 0.057 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 85 percent done.
STK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.786866e-03	ci left: 9.828525e-01	ci right 9.876587e-01	k: 9854	n:10000
Cons ci ratio: 5.965125e-02	ci left: 2.925144e-01	ci right 3.106013e-01	k: 3015	n:10000
KS ci ratio: 3.986605e-02	ci left: 4.816553e-01	ci right 5.013497e-01	k: 4915	n:10000
STK4   10000 perm   2 sec   (6241 perm/sec)   p_kst 4.915000e-01   p_cons 3.015000e-01   p_joint 9.854000e-01

Outputting figure to mutsig2_images.part000000000168/STK4.2_1508_10000_0.4915_0.3015_0.9854.png
                gene_name: STK4
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 88 percent done.
STMN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.370713e-02	ci left: 8.848302e-01	ci right 8.971410e-01	k: 8911	n:10000
KS ci ratio: 1.199829e-02	ci left: 9.087451e-01	ci right 9.198122e-01	k: 9144	n:10000
STMN2   10000 perm   1 sec   (6957 perm/sec)   p_kst 9.144000e-01   p_cons 8.911000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000168/STMN2.2_560_10000_0.9144_0.8911_1.png
                gene_name: STMN2
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
STT3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.455968e-02	ci left: 7.091690e-01	ci right 7.269038e-01	k: 7181	n:10000
KS ci ratio: 1.855977e-02	ci left: 8.091780e-01	ci right 8.244370e-01	k: 8169	n:10000
STT3A   10000 perm   2 sec   (5793 perm/sec)   p_kst 8.169000e-01   p_cons 7.181000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000168/STT3A.2_2186_10000_0.8169_0.7181_1.png
                gene_name: STT3A
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
STX11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.219088e-01	ci left: 8.796014e-02	ci right 9.947780e-02	k: 936	n:10000
Cons ci ratio: 1.504075e-01	ci left: 5.879809e-02	ci right 6.845803e-02	k: 635	n:10000
KS ci ratio: 4.628462e-02	ci left: 4.079093e-01	ci right 4.273387e-01	k: 4176	n:10000
STX11   10000 perm   1 sec   (6749 perm/sec)   p_kst 4.176000e-01   p_cons 6.350000e-02   p_joint 9.360000e-02

Joint ci ratio: 8.340923e-02	ci left: 9.528684e-02	ci right 1.036300e-01	k: 1988	n:20000
Cons ci ratio: 1.008760e-01	ci left: 6.664808e-02	ci right 7.377748e-02	k: 1403	n:20000
KS ci ratio: 3.249680e-02	ci left: 4.142442e-01	ci right 4.279788e-01	k: 8422	n:20000
STX11   20000 perm   3 sec   (5746 perm/sec)   p_kst 4.211000e-01   p_cons 7.015000e-02   p_joint 9.940000e-02

Joint ci ratio: 7.828307e-02	ci left: 7.410588e-02	ci right 8.017631e-02	k: 2313	n:30000
Cons ci ratio: 8.232350e-02	ci left: 6.736673e-02	ci right 7.318349e-02	k: 2107	n:30000
KS ci ratio: 2.647456e-02	ci left: 4.166021e-01	ci right 4.278130e-01	k: 12666	n:30000
STX11   30000 perm   6 sec   (5392 perm/sec)   p_kst 4.222000e-01   p_cons 7.023333e-02   p_joint 7.710000e-02

Outputting figure to mutsig2_images.part000000000168/STX11.2_868_30000_0.4222_0.070233_0.0771.png
                gene_name: STX11
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.070 
      ci_cons_bounds_left: 0.067 
     ci_cons_bounds_right: 0.073 
                  p_joint: 0.077 
     ci_joint_bounds_left: 0.074 
    ci_joint_bounds_right: 0.080 

Current progress: 95 percent done.
STX19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.425851e-02	ci left: 8.767431e-01	ci right 8.894328e-01	k: 8832	n:10000
Cons ci ratio: 7.786312e-02	ci left: 1.942671e-01	ci right 2.101068e-01	k: 2021	n:10000
KS ci ratio: 5.683687e-03	ci left: 9.765289e-01	ci right 9.821870e-01	k: 9795	n:10000
STX19   10000 perm   1 sec   (7130 perm/sec)   p_kst 9.795000e-01   p_cons 2.021000e-01   p_joint 8.832000e-01

Outputting figure to mutsig2_images.part000000000168/STX19.2_889_10000_0.9795_0.2021_0.8832.png
                gene_name: STX19
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 98 percent done.
STX1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.560780e-02	ci left: 8.563091e-01	ci right 8.698787e-01	k: 8632	n:10000
Cons ci ratio: 9.173417e-02	ci left: 1.472713e-01	ci right 1.615306e-01	k: 1543	n:10000
KS ci ratio: 2.315671e-02	ci left: 7.325974e-01	ci right 7.498618e-01	k: 7413	n:10000
STX1B   10000 perm   2 sec   (6424 perm/sec)   p_kst 7.413000e-01   p_cons 1.543000e-01   p_joint 8.632000e-01

Outputting figure to mutsig2_images.part000000000168/STX1B.2_907_10000_0.7413_0.1543_0.8632.png
                gene_name: STX1B
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000168
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 168 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1714>
Subject: Job 8004591: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1714>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000169> was used as the working directory.
Started at Sun Nov 11 15:20:44 2012
Results reported at Sun Nov 11 15:30:19 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000169.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000169.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 169  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000169.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    623.81 sec.
    Max Memory :      4730 MB
    Max Swap   :      7046 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
169
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 169
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 169: processing genes 15200 - 15289
Calculating significance of each gene.
Using projection method.
15200	STX5	2.304797e-01
15201	STX6	1
15202	STX7	3.673254e-01
15203	STX8	1
15204	STXBP1	1
15205	STXBP2	6.102354e-01
15206	STXBP3	7.878270e-01
15207	STXBP4	8.562546e-01
15208	STXBP5	6.263666e-01
15209	STXBP5L	9.405241e-01
15210	STXBP6	1
15211	STYK1	4.526820e-01
15212	STYX	5.263005e-01
15213	STYXL1	1.427178e-01
15214	SUB1	1.411041e-01
15215	SUCLA2	4.696357e-01
15216	SUCLG1	1
15217	SUCLG2	7.719559e-01
15218	SUCNR1	2.222056e-01
15219	SUDS3	1
15220	SUFU	5.554226e-01
15221	SUGT1	7.566899e-01
15222	SULF1	3.037360e-01
15223	SULF2	1
15224	SULT1A1	3.508505e-01
15225	SULT1A2	3.471967e-01
15226	SULT1B1	3.796854e-02
15227	SULT1C2	6.903867e-02
15228	SULT1C3	3.516742e-01
15229	SULT1C4	7.580732e-01
15230	SULT1E1	7.360301e-01
15231	SULT2A1	7.475979e-02
15232	SULT2B1	1
15233	SULT4A1	1
15234	SULT6B1	1
15235	SUMF1	1
15236	SUMF2	8.214642e-01
15237	SUMO1	2.109259e-01
15238	SUMO2	1
15239	SUMO3	1
15240	SUMO4	1
15241	SUN1	6.990365e-01
15242	SUN2	9.581105e-01
15243	SUN3	3.992870e-02
15244	SUN5	5.125684e-01
15245	SUOX	1
15246	SUPT16H	1
15247	SUPT3H	2.674742e-01
15248	SUPT4H1	1
15249	SUPT5H	1
15250	SUPT6H	9.982142e-01
15251	SUPT7L	5.284448e-01
15252	SUPV3L1	1
15253	SURF1	1
15254	SURF2	1.160770e-01
15255	SURF4	1
15256	SURF6	7.859266e-01
15257	SUSD1	6.324544e-01
15258	SUSD2	4.992745e-01
15259	SUSD3	1
15260	SUSD4	6.538007e-01
15261	SUSD5	8.237853e-01
15262	SUV39H1	3.148086e-01
15263	SUV39H2	2.151758e-01
15264	SUV420H1	3.996082e-01
15265	SUV420H2	1
15266	SUZ12	1.602689e-01
15267	SV2A	6.273737e-01
15268	SV2B	7.469924e-01
15269	SV2C	4.212174e-01
15270	SVEP1	9.972521e-01
15271	SVIL	6.658970e-01
15272	SVIP	1
15273	SVOP	1
15274	SVOPL	8.083836e-01
15275	SWAP70	8.538709e-01
15276	SYAP1	1
15277	SYBU	4.698772e-01
15278	SYCE1	2.401792e-01
15279	SYCE2	2.452918e-01
15280	SYCN	1
15281	SYCP1	1
15282	SYCP2	1
15283	SYCP2L	6.787386e-01
15284	SYCP3	1
15285	SYDE1	1
15286	SYDE2	5.270985e-01
15287	SYF2	1
15288	SYK	1
15289	SYMPK	9.119438e-01
Done

Running MutSig 2:
Scatter job 169: processing genes 15200 - 15289
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SVEP1
Processing conservation and coverage...
91% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.364582e-02	ci left: 7.244142e-01	ci right 7.418498e-01	k: 7332	n:10000
Cons ci ratio: 5.242615e-02	ci left: 3.490931e-01	ci right 3.679893e-01	k: 3585	n:10000
KS ci ratio: 1.944755e-02	ci left: 7.945595e-01	ci right 8.102639e-01	k: 8025	n:10000
SVEP1   10000 perm   3 sec   (3323 perm/sec)   p_kst 8.025000e-01   p_cons 3.585000e-01   p_joint 7.332000e-01

Outputting figure to mutsig2_images.part000000000169/SVEP1.13_10908_10000_0.8025_0.3585_0.7332.png
                gene_name: SVEP1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 2 percent done.
SVIL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.339994e-02	ci left: 4.394169e-01	ci right 4.590127e-01	k: 4492	n:10000
Cons ci ratio: 1.215078e-02	ci left: 9.066881e-01	ci right 9.178704e-01	k: 9124	n:10000
KS ci ratio: 6.849801e-02	ci left: 2.381767e-01	ci right 2.551711e-01	k: 2466	n:10000
SVIL   10000 perm   2 sec   (4120 perm/sec)   p_kst 2.466000e-01   p_cons 9.124000e-01   p_joint 4.492000e-01

Outputting figure to mutsig2_images.part000000000169/SVIL.9_6785_10000_0.2466_0.9124_0.4492.png
                gene_name: SVIL
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 4 percent done.
SYMPK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.833256e-02	ci left: 2.390661e-01	ci right 2.560812e-01	k: 2475	n:10000
Cons ci ratio: 3.696130e-02	ci left: 5.194597e-01	ci right 5.391232e-01	k: 5293	n:10000
KS ci ratio: 1.135979e-01	ci left: 1.003243e-01	ci right 1.125061e-01	k: 1063	n:10000
SYMPK   10000 perm   2 sec   (4833 perm/sec)   p_kst 1.063000e-01   p_cons 5.293000e-01   p_joint 2.475000e-01

Joint ci ratio: 6.103007e-02	ci left: 1.657557e-01	ci right 1.762402e-01	k: 3419	n:20000
Cons ci ratio: 2.640875e-02	ci left: 5.172005e-01	ci right 5.310925e-01	k: 10483	n:20000
KS ci ratio: 7.932974e-02	ci left: 1.044674e-01	ci right 1.131467e-01	k: 2175	n:20000
SYMPK   20000 perm   5 sec   (4397 perm/sec)   p_kst 1.087500e-01   p_cons 5.241500e-01   p_joint 1.709500e-01

Outputting figure to mutsig2_images.part000000000169/SYMPK.8_3929_20000_0.10875_0.52415_0.17095.png
                gene_name: SYMPK
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 7 percent done.
STXBP5L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.862992e-02	ci left: 6.426714e-01	ci right 6.614400e-01	k: 6521	n:10000
Cons ci ratio: 1.166602e-02	ci left: 9.131707e-01	ci right 9.239840e-01	k: 9187	n:10000
KS ci ratio: 4.225205e-02	ci left: 4.526899e-01	ci right 4.723320e-01	k: 4625	n:10000
STXBP5L   10000 perm   2 sec   (4818 perm/sec)   p_kst 4.625000e-01   p_cons 9.187000e-01   p_joint 6.521000e-01

Outputting figure to mutsig2_images.part000000000169/STXBP5L.7_3669_10000_0.4625_0.9187_0.6521.png
                gene_name: STXBP5L
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 9 percent done.
SULF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.157470e-02	ci left: 2.794346e-01	ci right 2.972888e-01	k: 2883	n:10000
Cons ci ratio: 7.924085e-02	ci left: 1.887513e-01	ci right 2.044258e-01	k: 1965	n:10000
KS ci ratio: 7.450460e-02	ci left: 2.086584e-01	ci right 2.249069e-01	k: 2167	n:10000
SULF1   10000 perm   2 sec   (5195 perm/sec)   p_kst 2.167000e-01   p_cons 1.965000e-01   p_joint 2.883000e-01

Outputting figure to mutsig2_images.part000000000169/SULF1.7_2692_10000_0.2167_0.1965_0.2883.png
                gene_name: SULF1
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 11 percent done.
SUPT6H
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.268989e-02	ci left: 8.992899e-01	ci right 9.108729e-01	k: 9052	n:10000
Cons ci ratio: 4.046070e-02	ci left: 4.742610e-01	ci right 4.939483e-01	k: 4841	n:10000
KS ci ratio: 1.974757e-02	ci left: 7.895889e-01	ci right 8.054374e-01	k: 7976	n:10000
SUPT6H   10000 perm   2 sec   (4611 perm/sec)   p_kst 7.976000e-01   p_cons 4.841000e-01   p_joint 9.052000e-01

Outputting figure to mutsig2_images.part000000000169/SUPT6H.6_5325_10000_0.7976_0.4841_0.9052.png
                gene_name: SUPT6H
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 13 percent done.
SUV420H1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.531941e-02	ci left: 6.965581e-01	ci right 7.145221e-01	k: 7056	n:10000
KS ci ratio: 1.012743e-02	ci left: 9.325769e-01	ci right 9.421664e-01	k: 9375	n:10000
SUV420H1   10000 perm   2 sec   (5394 perm/sec)   p_kst 9.375000e-01   p_cons 7.056000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000169/SUV420H1.6_2706_10000_0.9375_0.7056_1.png
                gene_name: SUV420H1
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 15 percent done.
SYCP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.731320e-02	ci left: 8.294091e-01	ci right 8.439942e-01	k: 8368	n:10000
Cons ci ratio: 3.330595e-02	ci left: 5.709563e-01	ci right 5.903967e-01	k: 5807	n:10000
KS ci ratio: 2.402065e-02	ci left: 7.181531e-01	ci right 7.357145e-01	k: 7270	n:10000
SYCP1   10000 perm   2 sec   (5106 perm/sec)   p_kst 7.270000e-01   p_cons 5.807000e-01   p_joint 8.368000e-01

Outputting figure to mutsig2_images.part000000000169/SYCP1.6_3055_10000_0.727_0.5807_0.8368.png
                gene_name: SYCP1
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 17 percent done.
STXBP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.806084e-02	ci left: 3.897810e-01	ci right 4.090776e-01	k: 3994	n:10000
Cons ci ratio: 5.989282e-02	ci left: 2.908294e-01	ci right 3.088873e-01	k: 2998	n:10000
KS ci ratio: 4.274819e-02	ci left: 4.469008e-01	ci right 4.665244e-01	k: 4567	n:10000
STXBP5   10000 perm   2 sec   (5083 perm/sec)   p_kst 4.567000e-01   p_cons 2.998000e-01   p_joint 3.994000e-01

Outputting figure to mutsig2_images.part000000000169/STXBP5.4_3568_10000_0.4567_0.2998_0.3994.png
                gene_name: STXBP5
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 20 percent done.
STYK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.019158e-03	ci left: 9.453375e-01	ci right 9.539982e-01	k: 9498	n:10000
KS ci ratio: 7.584265e-03	ci left: 9.601611e-01	ci right 9.675655e-01	k: 9640	n:10000
STYK1   10000 perm   2 sec   (5110 perm/sec)   p_kst 9.640000e-01   p_cons 9.498000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000169/STYK1.4_1305_10000_0.964_0.9498_1.png
                gene_name: STYK1
               theta_stop: 0.0090 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 22 percent done.
SULF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.195183e-01	ci left: 2.750089e-02	ci right 3.437595e-02	k: 308	n:10000
Cons ci ratio: 6.856483e-03	ci left: 9.668882e-01	ci right 9.736342e-01	k: 9704	n:10000
KS ci ratio: 4.160103e-01	ci left: 6.974044e-03	ci right 1.072050e-02	k: 87	n:10000
SULF2   10000 perm   2 sec   (5507 perm/sec)   p_kst 8.700000e-03   p_cons 9.704000e-01   p_joint 3.080000e-02

Joint ci ratio: 1.104967e-01	ci left: 5.591985e-02	ci right 6.250903e-02	k: 1183	n:20000
Cons ci ratio: 4.725504e-03	ci left: 9.694110e-01	ci right 9.740505e-01	k: 19436	n:20000
KS ci ratio: 2.822767e-01	ci left: 8.202300e-03	ci right 1.094312e-02	k: 190	n:20000
SULF2   20000 perm   4 sec   (4939 perm/sec)   p_kst 9.500000e-03   p_cons 9.718000e-01   p_joint 5.915000e-02

Joint ci ratio: 1.109208e-01	ci left: 3.774564e-02	ci right 4.221067e-02	k: 1198	n:30000
Cons ci ratio: 3.878387e-03	ci left: 9.695541e-01	ci right 9.733538e-01	k: 29145	n:30000
KS ci ratio: 2.383763e-01	ci left: 7.868329e-03	ci right 1.002838e-02	k: 267	n:30000
SULF2   30000 perm   6 sec   (4751 perm/sec)   p_kst 8.900000e-03   p_cons 9.715000e-01   p_joint 3.993333e-02

Joint ci ratio: 8.556866e-02	ci left: 4.771297e-02	ci right 5.200268e-02	k: 1993	n:40000
Cons ci ratio: 3.327928e-03	ci left: 9.703361e-01	ci right 9.735949e-01	k: 38880	n:40000
KS ci ratio: 2.110586e-01	ci left: 7.647359e-03	ci right 9.475061e-03	k: 341	n:40000
SULF2   40000 perm   9 sec   (4603 perm/sec)   p_kst 8.525000e-03   p_cons 9.720000e-01   p_joint 4.982500e-02

Joint ci ratio: 8.565928e-02	ci left: 3.847542e-02	ci right 4.193823e-02	k: 2009	n:50000
Cons ci ratio: 2.982904e-03	ci left: 9.703933e-01	ci right 9.733116e-01	k: 48594	n:50000
KS ci ratio: 1.882227e-01	ci left: 7.790214e-03	ci right 9.427604e-03	k: 429	n:50000
SULF2   50000 perm   11 sec   (4494 perm/sec)   p_kst 8.580000e-03   p_cons 9.718800e-01   p_joint 4.018000e-02

Joint ci ratio: 8.825535e-02	ci left: 3.042665e-02	ci right 3.325220e-02	k: 1909	n:60000
Cons ci ratio: 2.712723e-03	ci left: 9.707338e-01	ci right 9.733869e-01	k: 58325	n:60000
KS ci ratio: 1.719915e-01	ci left: 7.844769e-03	ci right 9.336682e-03	k: 514	n:60000
SULF2   60000 perm   14 sec   (4401 perm/sec)   p_kst 8.566667e-03   p_cons 9.720833e-01   p_joint 3.181667e-02

Joint ci ratio: 9.053012e-02	ci left: 2.490352e-02	ci right 2.727884e-02	k: 1825	n:70000
Cons ci ratio: 2.529729e-03	ci left: 9.704301e-01	ci right 9.729020e-01	k: 68018	n:70000
KS ci ratio: 1.593449e-01	ci left: 7.888098e-03	ci right 9.267388e-03	k: 599	n:70000
SULF2   70000 perm   16 sec   (4316 perm/sec)   p_kst 8.557143e-03   p_cons 9.716857e-01   p_joint 2.607143e-02

Joint ci ratio: 9.751316e-02	ci left: 1.883362e-02	ci right 2.077642e-02	k: 1583	n:80000
Cons ci ratio: 2.368350e-03	ci left: 9.704637e-01	ci right 9.727770e-01	k: 77731	n:80000
KS ci ratio: 1.485860e-01	ci left: 7.983811e-03	ci right 9.277202e-03	k: 689	n:80000
SULF2   80000 perm   19 sec   (4239 perm/sec)   p_kst 8.612500e-03   p_cons 9.716375e-01   p_joint 1.978750e-02

Joint ci ratio: 9.230696e-02	ci left: 1.873689e-02	ci right 2.056092e-02	k: 1767	n:90000
Cons ci ratio: 2.222201e-03	ci left: 9.707994e-01	ci right 9.729700e-01	k: 87471	n:90000
KS ci ratio: 1.400201e-01	ci left: 8.028519e-03	ci right 9.247913e-03	k: 776	n:90000
SULF2   90000 perm   22 sec   (4165 perm/sec)   p_kst 8.622222e-03   p_cons 9.719000e-01   p_joint 1.963333e-02

Joint ci ratio: 9.687450e-02	ci left: 1.532898e-02	ci right 1.689926e-02	k: 1610	n:100000
Cons ci ratio: 2.102720e-03	ci left: 9.709994e-01	ci right 9.730531e-01	k: 97204	n:100000
KS ci ratio: 1.327831e-01	ci left: 8.066001e-03	ci right 9.222769e-03	k: 863	n:100000
SULF2   100000 perm   24 sec   (4096 perm/sec)   p_kst 8.630000e-03   p_cons 9.720400e-01   p_joint 1.610000e-02

Joint ci ratio: 1.056757e-01	ci left: 1.170125e-02	ci right 1.301556e-02	k: 1358	n:110000
Cons ci ratio: 2.000945e-03	ci left: 9.711559e-01	ci right 9.731100e-01	k: 106936	n:110000
KS ci ratio: 1.265635e-01	ci left: 8.097997e-03	ci right 9.200871e-03	k: 950	n:110000
SULF2   110000 perm   27 sec   (4028 perm/sec)   p_kst 8.636364e-03   p_cons 9.721455e-01   p_joint 1.234545e-02

Joint ci ratio: 7.751542e-02	ci left: 2.005719e-02	ci right 2.168275e-02	k: 2503	n:120000
Cons ci ratio: 1.914101e-03	ci left: 9.712457e-01	ci right 9.731147e-01	k: 116663	n:120000
KS ci ratio: 1.202697e-01	ci left: 8.246971e-03	ci right 9.310306e-03	k: 1052	n:120000
SULF2   120000 perm   30 sec   (3963 perm/sec)   p_kst 8.766667e-03   p_cons 9.721917e-01   p_joint 2.085833e-02

Joint ci ratio: 7.475165e-02	ci left: 1.994045e-02	ci right 2.149642e-02	k: 2692	n:130000
Cons ci ratio: 1.842626e-03	ci left: 9.711747e-01	ci right 9.729734e-01	k: 126371	n:130000
KS ci ratio: 1.164168e-01	ci left: 8.142550e-03	ci right 9.156473e-03	k: 1123	n:130000
SULF2   130000 perm   33 sec   (3904 perm/sec)   p_kst 8.638462e-03   p_cons 9.720846e-01   p_joint 2.070769e-02

Joint ci ratio: 7.876183e-02	ci left: 1.670049e-02	ci right 1.807674e-02	k: 2433	n:140000
Cons ci ratio: 1.779982e-03	ci left: 9.710717e-01	ci right 9.728087e-01	k: 136073	n:140000
KS ci ratio: 1.119241e-01	ci left: 8.199332e-03	ci right 9.178323e-03	k: 1215	n:140000
SULF2   140000 perm   36 sec   (3847 perm/sec)   p_kst 8.678571e-03   p_cons 9.719500e-01   p_joint 1.737857e-02

Joint ci ratio: 7.169547e-02	ci left: 1.883896e-02	ci right 2.024636e-02	k: 2930	n:150000
Cons ci ratio: 1.713191e-03	ci left: 9.713082e-01	ci right 9.729802e-01	k: 145823	n:150000
KS ci ratio: 1.082487e-01	ci left: 8.197291e-03	ci right 9.141848e-03	k: 1299	n:150000
SULF2   150000 perm   40 sec   (3790 perm/sec)   p_kst 8.660000e-03   p_cons 9.721533e-01   p_joint 1.953333e-02

Joint ci ratio: 7.165301e-02	ci left: 1.770412e-02	ci right 1.902592e-02	k: 2937	n:160000
Cons ci ratio: 1.660603e-03	ci left: 9.712750e-01	ci right 9.728953e-01	k: 155535	n:160000
KS ci ratio: 1.044574e-01	ci left: 8.269018e-03	ci right 9.186417e-03	k: 1395	n:160000
SULF2   160000 perm   43 sec   (3739 perm/sec)   p_kst 8.718750e-03   p_cons 9.720937e-01   p_joint 1.835625e-02

Joint ci ratio: 7.097071e-02	ci left: 1.700335e-02	ci right 1.826024e-02	k: 2996	n:170000
Cons ci ratio: 1.610652e-03	ci left: 9.713121e-01	ci right 9.728835e-01	k: 165258	n:170000
KS ci ratio: 1.013817e-01	ci left: 8.275467e-03	ci right 9.164938e-03	k: 1481	n:170000
SULF2   170000 perm   46 sec   (3687 perm/sec)   p_kst 8.711765e-03   p_cons 9.721059e-01   p_joint 1.762353e-02

Joint ci ratio: 7.289650e-02	ci left: 1.523441e-02	ci right 1.639237e-02	k: 2845	n:180000
Cons ci ratio: 1.560779e-03	ci left: 9.714920e-01	ci right 9.730149e-01	k: 175007	n:180000
KS ci ratio: 9.802790e-02	ci left: 8.373694e-03	ci right 9.242237e-03	k: 1584	n:180000
SULF2   180000 perm   49 sec   (3637 perm/sec)   p_kst 8.800000e-03   p_cons 9.722611e-01   p_joint 1.580556e-02

Outputting figure to mutsig2_images.part000000000169/SULF2.4_2693_180000_0.0088_0.97226_0.015806.png
                gene_name: SULF2
               theta_stop: 0.098 
                    nperm: 180000 
                     p_ks: 0.0088 
        ci_ks_bounds_left: 0.0084 
       ci_ks_bounds_right: 0.0092 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.016 
     ci_joint_bounds_left: 0.015 
    ci_joint_bounds_right: 0.016 

Current progress: 24 percent done.
SULT1B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.866392e-02	ci left: 1.562022e-01	ci right 1.707944e-01	k: 1634	n:10000
Cons ci ratio: 3.054647e-01	ci left: 1.372489e-02	ci right 1.876262e-02	k: 161	n:10000
KS ci ratio: 2.008940e-02	ci left: 7.839105e-01	ci right 7.999191e-01	k: 7920	n:10000
SULT1B1   10000 perm   2 sec   (6273 perm/sec)   p_kst 7.920000e-01   p_cons 1.610000e-02   p_joint 1.634000e-01

Joint ci ratio: 9.606744e-02	ci left: 7.314641e-02	ci right 8.057716e-02	k: 1536	n:20000
Cons ci ratio: 2.110880e-01	ci left: 1.515911e-02	ci right 1.878328e-02	k: 338	n:20000
KS ci ratio: 1.443333e-02	ci left: 7.809563e-01	ci right 7.923602e-01	k: 15734	n:20000
SULT1B1   20000 perm   4 sec   (5573 perm/sec)   p_kst 7.867000e-01   p_cons 1.690000e-02   p_joint 7.680000e-02

Joint ci ratio: 7.928999e-02	ci left: 7.233859e-02	ci right 7.834396e-02	k: 2259	n:30000
Cons ci ratio: 1.799757e-01	ci left: 1.416440e-02	ci right 1.699721e-02	k: 466	n:30000
KS ci ratio: 1.175429e-02	ci left: 7.828937e-01	ci right 7.921838e-01	k: 23627	n:30000
SULT1B1   30000 perm   6 sec   (5279 perm/sec)   p_kst 7.875667e-01   p_cons 1.553333e-02   p_joint 7.530000e-02

Joint ci ratio: 6.509399e-02	ci left: 8.041276e-02	ci right 8.584794e-02	k: 3324	n:40000
Cons ci ratio: 1.556949e-01	ci left: 1.438431e-02	ci right 1.683674e-02	k: 623	n:40000
KS ci ratio: 1.018152e-02	ci left: 7.834578e-01	ci right 7.915004e-01	k: 31500	n:40000
SULT1B1   40000 perm   8 sec   (5131 perm/sec)   p_kst 7.875000e-01   p_cons 1.557500e-02   p_joint 8.310000e-02

Joint ci ratio: 6.311653e-02	ci left: 6.935503e-02	ci right 7.389486e-02	k: 3580	n:50000
Cons ci ratio: 1.327508e-01	ci left: 1.600109e-02	ci right 1.829546e-02	k: 856	n:50000
KS ci ratio: 9.253912e-03	ci left: 7.784351e-01	ci right 7.856921e-01	k: 39104	n:50000
SULT1B1   50000 perm   10 sec   (5019 perm/sec)   p_kst 7.820800e-01   p_cons 1.712000e-02   p_joint 7.160000e-02

Joint ci ratio: 5.906781e-02	ci left: 6.635987e-02	ci right 7.041533e-02	k: 4102	n:60000
Cons ci ratio: 1.259678e-01	ci left: 1.488193e-02	ci right 1.689862e-02	k: 952	n:60000
KS ci ratio: 8.449605e-03	ci left: 7.786743e-01	ci right 7.852984e-01	k: 46920	n:60000
SULT1B1   60000 perm   12 sec   (4906 perm/sec)   p_kst 7.820000e-01   p_cons 1.586667e-02   p_joint 6.836667e-02

Joint ci ratio: 5.782798e-02	ci left: 5.981588e-02	ci right 6.339199e-02	k: 4311	n:70000
Cons ci ratio: 1.152017e-01	ci left: 1.533326e-02	ci right 1.722143e-02	k: 1138	n:70000
KS ci ratio: 7.806094e-03	ci left: 7.796548e-01	ci right 7.857789e-01	k: 54791	n:70000
SULT1B1   70000 perm   15 sec   (4798 perm/sec)   p_kst 7.827286e-01   p_cons 1.625714e-02   p_joint 6.158571e-02

Joint ci ratio: 4.786600e-02	ci left: 7.549554e-02	ci right 7.921018e-02	k: 6187	n:80000
Cons ci ratio: 1.078758e-01	ci left: 1.536085e-02	ci right 1.712448e-02	k: 1298	n:80000
KS ci ratio: 7.335539e-03	ci left: 7.782810e-01	ci right 7.840236e-01	k: 62493	n:80000
SULT1B1   80000 perm   17 sec   (4697 perm/sec)   p_kst 7.811625e-01   p_cons 1.622500e-02   p_joint 7.733750e-02

Joint ci ratio: 5.032108e-02	ci left: 6.157494e-02	ci right 6.476440e-02	k: 5684	n:90000
Cons ci ratio: 1.009498e-01	ci left: 1.564530e-02	ci right 1.731941e-02	k: 1482	n:90000
KS ci ratio: 6.941093e-03	ci left: 7.772010e-01	ci right 7.826254e-01	k: 70193	n:90000
SULT1B1   90000 perm   20 sec   (4606 perm/sec)   p_kst 7.799222e-01   p_cons 1.646667e-02   p_joint 6.315556e-02

Joint ci ratio: 4.631367e-02	ci left: 6.529967e-02	ci right 6.840551e-02	k: 6684	n:100000
Cons ci ratio: 9.195043e-02	ci left: 1.702859e-02	ci right 1.867955e-02	k: 1784	n:100000
KS ci ratio: 6.595682e-03	ci left: 7.767768e-01	ci right 7.819270e-01	k: 77936	n:100000
SULT1B1   100000 perm   22 sec   (4522 perm/sec)   p_kst 7.793600e-01   p_cons 1.784000e-02   p_joint 6.684000e-02

Outputting figure to mutsig2_images.part000000000169/SULT1B1.4_919_100000_0.77936_0.01784_0.06684.png
                gene_name: SULT1B1
               theta_stop: 0.092 
                    nperm: 100000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.018 
      ci_cons_bounds_left: 0.017 
     ci_cons_bounds_right: 0.019 
                  p_joint: 0.067 
     ci_joint_bounds_left: 0.065 
    ci_joint_bounds_right: 0.068 

Current progress: 26 percent done.
SULT1C2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.291121e-02	ci left: 1.440348e-01	ci right 1.581691e-01	k: 1510	n:10000
Cons ci ratio: 1.329282e-01	ci left: 7.465870e-02	ci right 8.538747e-02	k: 799	n:10000
KS ci ratio: 3.254592e-02	ci left: 5.821915e-01	ci right 6.015549e-01	k: 5919	n:10000
SULT1C2   10000 perm   2 sec   (6546 perm/sec)   p_kst 5.919000e-01   p_cons 7.990000e-02   p_joint 1.510000e-01

Joint ci ratio: 5.549718e-02	ci left: 1.940795e-01	ci right 2.052079e-01	k: 3992	n:20000
Cons ci ratio: 9.123533e-02	ci left: 8.063194e-02	ci right 8.838936e-02	k: 1689	n:20000
KS ci ratio: 2.374136e-02	ci left: 5.699170e-01	ci right 5.836607e-01	k: 11536	n:20000
SULT1C2   20000 perm   3 sec   (5803 perm/sec)   p_kst 5.768000e-01   p_cons 8.445000e-02   p_joint 1.996000e-01

Outputting figure to mutsig2_images.part000000000169/SULT1C2.4_1018_20000_0.5768_0.08445_0.1996.png
                gene_name: SULT1C2
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.084 
      ci_cons_bounds_left: 0.081 
     ci_cons_bounds_right: 0.088 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 28 percent done.
SUN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.807057e-02	ci left: 6.516263e-01	ci right 6.702799e-01	k: 6610	n:10000
Cons ci ratio: 3.624798e-02	ci left: 5.291699e-01	ci right 5.488074e-01	k: 5390	n:10000
KS ci ratio: 3.430777e-02	ci left: 5.564183e-01	ci right 5.759431e-01	k: 5662	n:10000
SUN1   10000 perm   2 sec   (5905 perm/sec)   p_kst 5.662000e-01   p_cons 5.390000e-01   p_joint 6.610000e-01

Outputting figure to mutsig2_images.part000000000169/SUN1.4_2617_10000_0.5662_0.539_0.661.png
                gene_name: SUN1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 30 percent done.
SUN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.724192e-02	ci left: 6.650151e-01	ci right 6.834832e-01	k: 6743	n:10000
KS ci ratio: 1.920191e-02	ci left: 7.986185e-01	ci right 8.142026e-01	k: 8065	n:10000
SUN3   10000 perm   1 sec   (6937 perm/sec)   p_kst 8.065000e-01   p_cons 6.743000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000169/SUN3.4_1114_10000_0.8065_0.6743_1.png
                gene_name: SUN3
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 33 percent done.
SUN5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.538035e-02	ci left: 6.955495e-01	ci right 7.135312e-01	k: 7046	n:10000
Cons ci ratio: 1.175938e-02	ci left: 9.119352e-01	ci right 9.228202e-01	k: 9175	n:10000
KS ci ratio: 4.647540e-02	ci left: 4.059166e-01	ci right 4.253326e-01	k: 4156	n:10000
SUN5   10000 perm   2 sec   (6095 perm/sec)   p_kst 4.156000e-01   p_cons 9.175000e-01   p_joint 7.046000e-01

Outputting figure to mutsig2_images.part000000000169/SUN5.4_1192_10000_0.4156_0.9175_0.7046.png
                gene_name: SUN5
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.71 

Current progress: 35 percent done.
SUSD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.001624e-02	ci left: 7.851271e-01	ci right 8.011018e-01	k: 7932	n:10000
KS ci ratio: 2.466887e-02	ci left: 7.073525e-01	ci right 7.251214e-01	k: 7163	n:10000
SUSD2   10000 perm   2 sec   (6188 perm/sec)   p_kst 7.163000e-01   p_cons 7.932000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000169/SUSD2.4_2529_10000_0.7163_0.7932_1.png
                gene_name: SUSD2
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 37 percent done.
SUZ12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.138699e-01	ci left: 2.901644e-02	ci right 3.605933e-02	k: 324	n:10000
Cons ci ratio: 1.267434e-01	ci left: 8.174120e-02	ci right 9.290058e-02	k: 872	n:10000
KS ci ratio: 3.602602e-01	ci left: 9.594514e-03	ci right 1.389697e-02	k: 116	n:10000
SUZ12   10000 perm   2 sec   (5681 perm/sec)   p_kst 1.160000e-02   p_cons 8.720000e-02   p_joint 3.240000e-02

Joint ci ratio: 2.016150e-01	ci left: 1.667773e-02	ci right 2.046408e-02	k: 370	n:20000
Cons ci ratio: 8.967923e-02	ci left: 8.327621e-02	ci right 9.114429e-02	k: 1743	n:20000
KS ci ratio: 2.360574e-01	ci left: 1.199373e-02	ci right 1.524994e-02	k: 271	n:20000
SUZ12   20000 perm   4 sec   (5099 perm/sec)   p_kst 1.355000e-02   p_cons 8.715000e-02   p_joint 1.850000e-02

Joint ci ratio: 2.397339e-01	ci left: 7.774275e-03	ci right 9.922465e-03	k: 264	n:30000
Cons ci ratio: 7.263172e-02	ci left: 8.527657e-02	ci right 9.173671e-02	k: 2654	n:30000
KS ci ratio: 1.906213e-01	ci left: 1.257399e-02	ci right 1.525470e-02	k: 416	n:30000
SUZ12   30000 perm   6 sec   (4870 perm/sec)   p_kst 1.386667e-02   p_cons 8.846667e-02   p_joint 8.800000e-03

Joint ci ratio: 2.334406e-01	ci left: 6.182866e-03	ci right 7.839918e-03	k: 279	n:40000
Cons ci ratio: 5.952972e-02	ci left: 9.488112e-02	ci right 1.007274e-01	k: 3911	n:40000
KS ci ratio: 1.603252e-01	ci left: 1.354343e-02	ci right 1.592778e-02	k: 588	n:40000
SUZ12   40000 perm   8 sec   (4717 perm/sec)   p_kst 1.470000e-02   p_cons 9.777500e-02   p_joint 6.975000e-03

Joint ci ratio: 1.856276e-01	ci left: 8.019069e-03	ci right 9.678709e-03	k: 441	n:50000
Cons ci ratio: 5.353070e-02	ci left: 9.426123e-02	ci right 9.946568e-02	k: 4842	n:50000
KS ci ratio: 1.421554e-01	ci left: 1.391420e-02	ci right 1.606265e-02	k: 748	n:50000
SUZ12   50000 perm   11 sec   (4594 perm/sec)   p_kst 1.496000e-02   p_cons 9.684000e-02   p_joint 8.820000e-03

Joint ci ratio: 1.569985e-01	ci left: 9.475512e-03	ci right 1.110571e-02	k: 616	n:60000
Cons ci ratio: 4.900499e-02	ci left: 9.400022e-02	ci right 9.873891e-02	k: 5781	n:60000
KS ci ratio: 1.316256e-01	ci left: 1.360708e-02	ci right 1.554029e-02	k: 873	n:60000
SUZ12   60000 perm   13 sec   (4488 perm/sec)   p_kst 1.455000e-02   p_cons 9.635000e-02   p_joint 1.026667e-02

Joint ci ratio: 1.140368e-01	ci left: 1.565255e-02	ci right 1.755925e-02	k: 1161	n:70000
Cons ci ratio: 4.535001e-02	ci left: 9.425152e-02	ci right 9.863914e-02	k: 6750	n:70000
KS ci ratio: 1.185245e-01	ci left: 1.447305e-02	ci right 1.631030e-02	k: 1076	n:70000
SUZ12   70000 perm   16 sec   (4392 perm/sec)   p_kst 1.537143e-02   p_cons 9.642857e-02   p_joint 1.658571e-02

Joint ci ratio: 1.397622e-01	ci left: 9.056549e-03	ci right 1.042936e-02	k: 778	n:80000
Cons ci ratio: 4.443330e-02	ci left: 8.668906e-02	ci right 9.064083e-02	k: 7092	n:80000
KS ci ratio: 1.102282e-01	ci left: 1.470399e-02	ci right 1.643140e-02	k: 1244	n:80000
SUZ12   80000 perm   19 sec   (4310 perm/sec)   p_kst 1.555000e-02   p_cons 8.865000e-02   p_joint 9.725000e-03

Joint ci ratio: 1.340568e-01	ci left: 8.779862e-03	ci right 1.005206e-02	k: 846	n:90000
Cons ci ratio: 4.183643e-02	ci left: 8.701535e-02	ci right 9.074453e-02	k: 7998	n:90000
KS ci ratio: 1.045180e-01	ci left: 1.458396e-02	ci right 1.620305e-02	k: 1384	n:90000
SUZ12   90000 perm   21 sec   (4231 perm/sec)   p_kst 1.537778e-02   p_cons 8.886667e-02   p_joint 9.400000e-03

Joint ci ratio: 1.297860e-01	ci left: 8.452972e-03	ci right 9.635768e-03	k: 903	n:100000
Cons ci ratio: 3.966696e-02	ci left: 8.720247e-02	ci right 9.074141e-02	k: 8896	n:100000
KS ci ratio: 9.805658e-02	ci left: 1.495811e-02	ci right 1.651017e-02	k: 1572	n:100000
SUZ12   100000 perm   24 sec   (4161 perm/sec)   p_kst 1.572000e-02   p_cons 8.896000e-02   p_joint 9.030000e-03

Joint ci ratio: 1.225333e-01	ci left: 8.653031e-03	ci right 9.791252e-03	k: 1013	n:110000
Cons ci ratio: 3.773154e-02	ci left: 8.766611e-02	ci right 9.104649e-02	k: 9828	n:110000
KS ci ratio: 9.252824e-02	ci left: 1.531116e-02	ci right 1.680543e-02	k: 1765	n:110000
SUZ12   110000 perm   27 sec   (4091 perm/sec)   p_kst 1.604545e-02   p_cons 8.934545e-02   p_joint 9.209091e-03

Joint ci ratio: 1.193019e-01	ci left: 8.384427e-03	ci right 9.456174e-03	k: 1069	n:120000
Cons ci ratio: 3.615955e-02	ci left: 8.758482e-02	ci right 9.081840e-02	k: 10703	n:120000
KS ci ratio: 8.850847e-02	ci left: 1.537098e-02	ci right 1.680254e-02	k: 1929	n:120000
SUZ12   120000 perm   30 sec   (4031 perm/sec)   p_kst 1.607500e-02   p_cons 8.919167e-02   p_joint 8.908333e-03

Joint ci ratio: 1.003576e-01	ci left: 1.101750e-02	ci right 1.218905e-02	k: 1507	n:130000
Cons ci ratio: 3.475415e-02	ci left: 8.758722e-02	ci right 9.069268e-02	k: 11587	n:130000
KS ci ratio: 8.495022e-02	ci left: 1.543032e-02	ci right 1.680677e-02	k: 2094	n:130000
SUZ12   130000 perm   33 sec   (3971 perm/sec)   p_kst 1.610769e-02   p_cons 8.913077e-02   p_joint 1.159231e-02

Joint ci ratio: 9.028670e-02	ci left: 1.268550e-02	ci right 1.389192e-02	k: 1859	n:140000
Cons ci ratio: 3.354218e-02	ci left: 8.739289e-02	ci right 9.038130e-02	k: 12443	n:140000
KS ci ratio: 8.232780e-02	ci left: 1.527922e-02	ci right 1.659808e-02	k: 2230	n:140000
SUZ12   140000 perm   36 sec   (3912 perm/sec)   p_kst 1.592857e-02   p_cons 8.887857e-02   p_joint 1.327857e-02

Outputting figure to mutsig2_images.part000000000169/SUZ12.4_2284_140000_0.015929_0.088879_0.013279.png
                gene_name: SUZ12
               theta_stop: 0.090 
                    nperm: 140000 
                     p_ks: 0.016 
        ci_ks_bounds_left: 0.015 
       ci_ks_bounds_right: 0.017 
                   p_cons: 0.089 
      ci_cons_bounds_left: 0.087 
     ci_cons_bounds_right: 0.090 
                  p_joint: 0.013 
     ci_joint_bounds_left: 0.013 
    ci_joint_bounds_right: 0.014 

Current progress: 39 percent done.
SV2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.182134e-02	ci left: 9.111117e-01	ci right 9.220441e-01	k: 9167	n:10000
KS ci ratio: 1.556815e-02	ci left: 8.569213e-01	ci right 8.704660e-01	k: 8638	n:10000
SV2B   10000 perm   2 sec   (5693 perm/sec)   p_kst 8.638000e-01   p_cons 9.167000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000169/SV2B.4_2100_10000_0.8638_0.9167_1.png
                gene_name: SV2B
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 41 percent done.
SV2C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.907414e-02	ci left: 2.351136e-01	ci right 2.520360e-01	k: 2435	n:10000
Cons ci ratio: 5.850473e-03	ci left: 9.752511e-01	ci right 9.810657e-01	k: 9783	n:10000
KS ci ratio: 8.505128e-02	ci left: 1.676965e-01	ci right 1.826932e-01	k: 1751	n:10000
SV2C   10000 perm   2 sec   (5686 perm/sec)   p_kst 1.751000e-01   p_cons 9.783000e-01   p_joint 2.435000e-01

Outputting figure to mutsig2_images.part000000000169/SV2C.4_2232_10000_0.1751_0.9783_0.2435.png
                gene_name: SV2C
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 43 percent done.
SYCP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.277403e-02	ci left: 4.466014e-01	ci right 4.662240e-01	k: 4564	n:10000
Cons ci ratio: 4.190533e-02	ci left: 4.567830e-01	ci right 4.764365e-01	k: 4666	n:10000
KS ci ratio: 4.676357e-02	ci left: 4.029277e-01	ci right 4.223232e-01	k: 4126	n:10000
SYCP2   10000 perm   2 sec   (4812 perm/sec)   p_kst 4.126000e-01   p_cons 4.666000e-01   p_joint 4.564000e-01

Outputting figure to mutsig2_images.part000000000169/SYCP2.4_4765_10000_0.4126_0.4666_0.4564.png
                gene_name: SYCP2
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 46 percent done.
SYDE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.251226e-02	ci left: 5.826932e-01	ci right 6.020529e-01	k: 5924	n:10000
Cons ci ratio: 1.442374e-02	ci left: 8.742881e-01	ci right 8.870892e-01	k: 8808	n:10000
KS ci ratio: 4.123801e-02	ci left: 4.647714e-01	ci right 4.844434e-01	k: 4746	n:10000
SYDE2   10000 perm   2 sec   (5166 perm/sec)   p_kst 4.746000e-01   p_cons 8.808000e-01   p_joint 5.924000e-01

Outputting figure to mutsig2_images.part000000000169/SYDE2.4_3613_10000_0.4746_0.8808_0.5924.png
                gene_name: SYDE2
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 48 percent done.
STYXL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.504549e-02	ci left: 7.010970e-01	ci right 7.189804e-01	k: 7101	n:10000
Cons ci ratio: 6.123146e-02	ci left: 2.817130e-01	ci right 2.996091e-01	k: 2906	n:10000
KS ci ratio: 2.327139e-02	ci left: 7.306776e-01	ci right 7.479828e-01	k: 7394	n:10000
STYXL1   10000 perm   2 sec   (6635 perm/sec)   p_kst 7.394000e-01   p_cons 2.906000e-01   p_joint 7.101000e-01

Outputting figure to mutsig2_images.part000000000169/STYXL1.3_974_10000_0.7394_0.2906_0.7101.png
                gene_name: STYXL1
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 50 percent done.
SULT2A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.842809e-02	ci left: 3.012392e-01	ci right 3.194714e-01	k: 3103	n:10000
Cons ci ratio: 1.781130e-02	ci left: 8.213734e-01	ci right 8.362346e-01	k: 8289	n:10000
KS ci ratio: 1.168182e-01	ci left: 9.525826e-02	ci right 1.071752e-01	k: 1011	n:10000
SULT2A1   10000 perm   2 sec   (6480 perm/sec)   p_kst 1.011000e-01   p_cons 8.289000e-01   p_joint 3.103000e-01

Joint ci ratio: 3.367422e-02	ci left: 3.970392e-01	ci right 4.106888e-01	k: 8077	n:20000
Cons ci ratio: 1.254956e-02	ci left: 8.246200e-01	ci right 8.350839e-01	k: 16598	n:20000
KS ci ratio: 8.303886e-02	ci left: 9.607192e-02	ci right 1.044447e-01	k: 2004	n:20000
SULT2A1   20000 perm   3 sec   (5741 perm/sec)   p_kst 1.002000e-01   p_cons 8.299000e-01   p_joint 4.038500e-01

Outputting figure to mutsig2_images.part000000000169/SULT2A1.3_882_20000_0.1002_0.8299_0.40385.png
                gene_name: SULT2A1
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.096 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.41 

Current progress: 52 percent done.
SUPT16H
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.054647e-01	ci left: 1.372489e-02	ci right 1.876262e-02	k: 161	n:10000
Cons ci ratio: 1.024032e-01	ci left: 1.212176e-01	ci right 1.344000e-01	k: 1277	n:10000
KS ci ratio: 2.920119e-01	ci left: 1.511403e-02	ci right 2.037228e-02	k: 176	n:10000
SUPT16H   10000 perm   2 sec   (5489 perm/sec)   p_kst 1.760000e-02   p_cons 1.277000e-01   p_joint 1.610000e-02

Joint ci ratio: 1.999736e-01	ci left: 1.696289e-02	ci right 2.077881e-02	k: 376	n:20000
Cons ci ratio: 7.192808e-02	ci left: 1.246298e-01	ci right 1.339783e-01	k: 2585	n:20000
KS ci ratio: 2.035806e-01	ci left: 1.634521e-02	ci right 2.009673e-02	k: 363	n:20000
SUPT16H   20000 perm   4 sec   (4890 perm/sec)   p_kst 1.815000e-02   p_cons 1.292500e-01   p_joint 1.880000e-02

Joint ci ratio: 2.050674e-01	ci left: 1.079864e-02	ci right 1.329720e-02	k: 360	n:30000
Cons ci ratio: 5.872068e-02	ci left: 1.255225e-01	ci right 1.331494e-01	k: 3879	n:30000
KS ci ratio: 1.709067e-01	ci left: 1.575899e-02	ci right 1.873556e-02	k: 516	n:30000
SUPT16H   30000 perm   6 sec   (4672 perm/sec)   p_kst 1.720000e-02   p_cons 1.293000e-01   p_joint 1.200000e-02

Joint ci ratio: 1.324608e-01	ci left: 2.000416e-02	ci right 2.286591e-02	k: 856	n:40000
Cons ci ratio: 5.058642e-02	ci left: 1.272133e-01	ci right 1.338404e-01	k: 5220	n:40000
KS ci ratio: 1.481560e-01	ci left: 1.592442e-02	ci right 1.849636e-02	k: 687	n:40000
SUPT16H   40000 perm   9 sec   (4534 perm/sec)   p_kst 1.717500e-02   p_cons 1.305000e-01   p_joint 2.140000e-02

Joint ci ratio: 1.185476e-01	ci left: 2.012998e-02	ci right 2.268601e-02	k: 1069	n:50000
Cons ci ratio: 4.544740e-02	ci left: 1.265686e-01	ci right 1.324745e-01	k: 6475	n:50000
KS ci ratio: 1.326721e-01	ci left: 1.602043e-02	ci right 1.831612e-02	k: 857	n:50000
SUPT16H   50000 perm   11 sec   (4418 perm/sec)   p_kst 1.714000e-02   p_cons 1.295000e-01   p_joint 2.138000e-02

Joint ci ratio: 1.006651e-01	ci left: 2.340776e-02	ci right 2.590518e-02	k: 1478	n:60000
Cons ci ratio: 4.163302e-02	ci left: 1.260467e-01	ci right 1.314226e-01	k: 7723	n:60000
KS ci ratio: 1.213889e-01	ci left: 1.604539e-02	ci right 1.813503e-02	k: 1024	n:60000
SUPT16H   60000 perm   14 sec   (4316 perm/sec)   p_kst 1.706667e-02   p_cons 1.287167e-01   p_joint 2.463333e-02

Joint ci ratio: 8.935623e-02	ci left: 2.556023e-02	ci right 2.796493e-02	k: 1872	n:70000
Cons ci ratio: 3.846718e-02	ci left: 1.266951e-01	ci right 1.316785e-01	k: 9042	n:70000
KS ci ratio: 1.115256e-01	ci left: 1.637479e-02	ci right 1.832266e-02	k: 1213	n:70000
SUPT16H   70000 perm   17 sec   (4237 perm/sec)   p_kst 1.732857e-02   p_cons 1.291714e-01   p_joint 2.674286e-02

Joint ci ratio: 9.869567e-02	ci left: 1.838226e-02	ci right 2.030282e-02	k: 1546	n:80000
Cons ci ratio: 3.592862e-02	ci left: 1.271930e-01	ci right 1.318589e-01	k: 10361	n:80000
KS ci ratio: 1.044926e-01	ci left: 1.638341e-02	ci right 1.820184e-02	k: 1382	n:80000
SUPT16H   80000 perm   19 sec   (4171 perm/sec)   p_kst 1.727500e-02   p_cons 1.295125e-01   p_joint 1.932500e-02

Joint ci ratio: 9.289826e-02	ci left: 1.849800e-02	ci right 2.031094e-02	k: 1745	n:90000
Cons ci ratio: 3.378608e-02	ci left: 1.279085e-01	ci right 1.323153e-01	k: 11709	n:90000
KS ci ratio: 9.825590e-02	ci left: 1.652324e-02	ci right 1.824140e-02	k: 1563	n:90000
SUPT16H   90000 perm   22 sec   (4108 perm/sec)   p_kst 1.736667e-02   p_cons 1.301000e-01   p_joint 1.938889e-02

Outputting figure to mutsig2_images.part000000000169/SUPT16H.3_3248_90000_0.017367_0.1301_0.019389.png
                gene_name: SUPT16H
               theta_stop: 0.098 
                    nperm: 90000 
                     p_ks: 0.017 
        ci_ks_bounds_left: 0.017 
       ci_ks_bounds_right: 0.018 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.019 
     ci_joint_bounds_left: 0.018 
    ci_joint_bounds_right: 0.020 

Current progress: 54 percent done.
SUSD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.133093e-03	ci left: 9.868662e-01	ci right 9.910417e-01	k: 9891	n:10000
Cons ci ratio: 4.499582e-02	ci left: 4.216640e-01	ci right 4.411760e-01	k: 4314	n:10000
KS ci ratio: 3.993788e-02	ci left: 4.807559e-01	ci right 5.004496e-01	k: 4906	n:10000
SUSD1   10000 perm   2 sec   (6129 perm/sec)   p_kst 4.906000e-01   p_cons 4.314000e-01   p_joint 9.891000e-01

Outputting figure to mutsig2_images.part000000000169/SUSD1.3_2312_10000_0.4906_0.4314_0.9891.png
                gene_name: SUSD1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 57 percent done.
SV2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.859839e-02	ci left: 6.431744e-01	ci right 6.619367e-01	k: 6526	n:10000
Cons ci ratio: 2.890169e-02	ci left: 6.383461e-01	ci right 6.571677e-01	k: 6478	n:10000
KS ci ratio: 3.719183e-02	ci left: 5.163572e-01	ci right 5.360275e-01	k: 5262	n:10000
SV2A   10000 perm   2 sec   (5938 perm/sec)   p_kst 5.262000e-01   p_cons 6.478000e-01   p_joint 6.526000e-01

Outputting figure to mutsig2_images.part000000000169/SV2A.3_2277_10000_0.5262_0.6478_0.6526.png
                gene_name: SV2A
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 59 percent done.
SYBU
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.304723e-02	ci left: 3.437266e-01	ci right 3.625590e-01	k: 3531	n:10000
Cons ci ratio: 7.832462e-02	ci left: 1.923954e-01	ci right 2.081796e-01	k: 2002	n:10000
KS ci ratio: 9.052390e-02	ci left: 1.507053e-01	ci right 1.650946e-01	k: 1578	n:10000
SYBU   10000 perm   2 sec   (6062 perm/sec)   p_kst 1.578000e-01   p_cons 2.002000e-01   p_joint 3.531000e-01

Outputting figure to mutsig2_images.part000000000169/SYBU.3_2035_10000_0.1578_0.2002_0.3531.png
                gene_name: SYBU
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 61 percent done.
SYCP2L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.634004e-02	ci left: 8.448877e-01	ci right 8.589066e-01	k: 8520	n:10000
Cons ci ratio: 4.132077e-02	ci left: 4.637727e-01	ci right 4.834426e-01	k: 4736	n:10000
KS ci ratio: 7.307472e-03	ci left: 9.627847e-01	ci right 9.699403e-01	k: 9665	n:10000
SYCP2L   10000 perm   2 sec   (5917 perm/sec)   p_kst 9.665000e-01   p_cons 4.736000e-01   p_joint 8.520000e-01

Outputting figure to mutsig2_images.part000000000169/SYCP2L.3_2555_10000_0.9665_0.4736_0.852.png
                gene_name: SYCP2L
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 63 percent done.
STX5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.650076e-03	ci left: 9.895002e-01	ci right 9.932050e-01	k: 9915	n:10000
Cons ci ratio: 3.643801e-02	ci left: 5.265668e-01	ci right 5.462120e-01	k: 5364	n:10000
KS ci ratio: 2.663449e-01	ci left: 1.837333e-02	ci right 2.411031e-02	k: 211	n:10000
STX5   10000 perm   1 sec   (6791 perm/sec)   p_kst 2.110000e-02   p_cons 5.364000e-01   p_joint 9.915000e-01

Joint ci ratio: 1.191979e-02	ci left: 8.388456e-01	ci right 8.489542e-01	k: 16879	n:20000
Cons ci ratio: 2.581397e-02	ci left: 5.285582e-01	ci right 5.424314e-01	k: 10710	n:20000
KS ci ratio: 1.899469e-01	ci left: 1.886701e-02	ci right 2.287398e-02	k: 416	n:20000
STX5   20000 perm   3 sec   (5966 perm/sec)   p_kst 2.080000e-02   p_cons 5.355000e-01   p_joint 8.439500e-01

Joint ci ratio: 1.108352e-02	ci left: 8.020508e-01	ci right 8.110231e-01	k: 24197	n:30000
Cons ci ratio: 2.106196e-02	ci left: 5.302034e-01	ci right 5.415230e-01	k: 16076	n:30000
KS ci ratio: 1.542756e-01	ci left: 1.943940e-02	ci right 2.272093e-02	k: 631	n:30000
STX5   30000 perm   5 sec   (5679 perm/sec)   p_kst 2.103333e-02   p_cons 5.358667e-01   p_joint 8.065667e-01

Joint ci ratio: 9.542915e-03	ci left: 8.044832e-01	ci right 8.122220e-01	k: 32335	n:40000
Cons ci ratio: 1.822452e-02	ci left: 5.313980e-01	ci right 5.411967e-01	k: 21452	n:40000
KS ci ratio: 1.356493e-01	ci left: 1.906122e-02	ci right 2.185900e-02	k: 817	n:40000
STX5   40000 perm   7 sec   (5496 perm/sec)   p_kst 2.042500e-02   p_cons 5.363000e-01   p_joint 8.083750e-01

Joint ci ratio: 8.736409e-03	ci left: 7.975335e-01	ci right 8.045516e-01	k: 40053	n:50000
Cons ci ratio: 1.628685e-02	ci left: 5.323372e-01	ci right 5.410985e-01	k: 26836	n:50000
KS ci ratio: 1.200465e-01	ci left: 1.962519e-02	ci right 2.215087e-02	k: 1043	n:50000
STX5   50000 perm   9 sec   (5355 perm/sec)   p_kst 2.086000e-02   p_cons 5.367200e-01   p_joint 8.010600e-01

Joint ci ratio: 7.922458e-03	ci left: 7.999623e-01	ci right 8.063417e-01	k: 48190	n:60000
Cons ci ratio: 1.489239e-02	ci left: 5.318996e-01	ci right 5.398970e-01	k: 32154	n:60000
KS ci ratio: 1.094445e-01	ci left: 1.978649e-02	ci right 2.209351e-02	k: 1255	n:60000
STX5   60000 perm   11 sec   (5221 perm/sec)   p_kst 2.091667e-02   p_cons 5.359000e-01   p_joint 8.031667e-01

Joint ci ratio: 7.352543e-03	ci left: 7.994306e-01	ci right 8.053443e-01	k: 56168	n:70000
Cons ci ratio: 1.377150e-02	ci left: 5.327830e-01	ci right 5.401854e-01	k: 37554	n:70000
KS ci ratio: 1.023412e-01	ci left: 1.947696e-02	ci right 2.159161e-02	k: 1436	n:70000
STX5   70000 perm   14 sec   (5103 perm/sec)   p_kst 2.051429e-02   p_cons 5.364857e-01   p_joint 8.024000e-01

Joint ci ratio: 6.672034e-03	ci left: 8.091242e-01	ci right 8.145532e-01	k: 64948	n:80000
Cons ci ratio: 1.286812e-02	ci left: 5.335622e-01	ci right 5.404851e-01	k: 42962	n:80000
KS ci ratio: 9.553234e-02	ci left: 1.962689e-02	ci right 2.160809e-02	k: 1648	n:80000
STX5   80000 perm   16 sec   (4998 perm/sec)   p_kst 2.060000e-02   p_cons 5.370250e-01   p_joint 8.118500e-01

Outputting figure to mutsig2_images.part000000000169/STX5.2_1108_80000_0.0206_0.53702_0.81185.png
                gene_name: STX5
               theta_stop: 0.096 
                    nperm: 80000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.022 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.81 

Current progress: 65 percent done.
STXBP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.752814e-02	ci left: 8.259500e-01	ci right 8.406553e-01	k: 8334	n:10000
Cons ci ratio: 2.140007e-02	ci left: 7.620288e-01	ci right 7.786135e-01	k: 7704	n:10000
KS ci ratio: 3.600800e-02	ci left: 5.324742e-01	ci right 5.521012e-01	k: 5423	n:10000
STXBP2   10000 perm   2 sec   (6626 perm/sec)   p_kst 5.423000e-01   p_cons 7.704000e-01   p_joint 8.334000e-01

Outputting figure to mutsig2_images.part000000000169/STXBP2.2_1858_10000_0.5423_0.7704_0.8334.png
                gene_name: STXBP2
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 67 percent done.
SUCLA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.442515e-02	ci left: 1.400152e-01	ci right 1.539911e-01	k: 1469	n:10000
Cons ci ratio: 2.740328e-02	ci left: 6.623971e-01	ci right 6.809028e-01	k: 6717	n:10000
KS ci ratio: 3.587123e-01	ci left: 9.685560e-03	ci right 1.400583e-02	k: 117	n:10000
SUCLA2   10000 perm   2 sec   (6557 perm/sec)   p_kst 1.170000e-02   p_cons 6.717000e-01   p_joint 1.469000e-01

Joint ci ratio: 6.216256e-02	ci left: 1.606697e-01	ci right 1.710277e-01	k: 3316	n:20000
Cons ci ratio: 1.937774e-02	ci left: 6.651423e-01	ci right 6.782078e-01	k: 13434	n:20000
KS ci ratio: 2.586925e-01	ci left: 9.881491e-03	ci right 1.286311e-02	k: 226	n:20000
SUCLA2   20000 perm   3 sec   (5773 perm/sec)   p_kst 1.130000e-02   p_cons 6.717000e-01   p_joint 1.658000e-01

Joint ci ratio: 5.438032e-02	ci left: 1.436038e-01	ci right 1.516645e-01	k: 4428	n:30000
Cons ci ratio: 1.583999e-02	ci left: 6.658510e-01	ci right 6.765158e-01	k: 20136	n:30000
KS ci ratio: 2.086053e-01	ci left: 1.041914e-02	ci right 1.287680e-02	k: 348	n:30000
SUCLA2   30000 perm   5 sec   (5496 perm/sec)   p_kst 1.160000e-02   p_cons 6.712000e-01   p_joint 1.476000e-01

Joint ci ratio: 2.917156e-02	ci left: 3.064650e-01	ci right 3.155625e-01	k: 12440	n:40000
Cons ci ratio: 1.421739e-02	ci left: 6.505436e-01	ci right 6.598839e-01	k: 26209	n:40000
KS ci ratio: 1.793627e-01	ci left: 1.074093e-02	ci right 1.288082e-02	k: 471	n:40000
SUCLA2   40000 perm   8 sec   (5313 perm/sec)   p_kst 1.177500e-02   p_cons 6.552250e-01   p_joint 3.110000e-01

Joint ci ratio: 3.432280e-02	ci left: 2.033366e-01	ci right 2.104575e-01	k: 10344	n:50000
Cons ci ratio: 1.270930e-02	ci left: 6.512957e-01	ci right 6.596462e-01	k: 32774	n:50000
KS ci ratio: 1.611196e-01	ci left: 1.075669e-02	ci right 1.266064e-02	k: 584	n:50000
SUCLA2   50000 perm   10 sec   (5180 perm/sec)   p_kst 1.168000e-02   p_cons 6.554800e-01   p_joint 2.068800e-01

Joint ci ratio: 3.091671e-02	ci left: 2.080392e-01	ci right 2.145887e-01	k: 12678	n:60000
Cons ci ratio: 1.159376e-02	ci left: 6.519826e-01	ci right 6.596023e-01	k: 39348	n:60000
KS ci ratio: 1.451075e-01	ci left: 1.114408e-02	ci right 1.290359e-02	k: 720	n:60000
SUCLA2   60000 perm   12 sec   (5058 perm/sec)   p_kst 1.200000e-02   p_cons 6.558000e-01   p_joint 2.113000e-01

Joint ci ratio: 2.244643e-02	ci left: 3.000524e-01	ci right 3.068782e-01	k: 21242	n:70000
Cons ci ratio: 1.072017e-02	ci left: 6.528397e-01	ci right 6.598902e-01	k: 45946	n:70000
KS ci ratio: 1.344379e-01	ci left: 1.119271e-02	ci right 1.281955e-02	k: 839	n:70000
SUCLA2   70000 perm   14 sec   (4941 perm/sec)   p_kst 1.198571e-02   p_cons 6.563714e-01   p_joint 3.034571e-01

Joint ci ratio: 2.671291e-02	ci left: 2.092466e-01	ci right 2.149243e-01	k: 16966	n:80000
Cons ci ratio: 1.003246e-02	ci left: 6.528592e-01	ci right 6.594545e-01	k: 52493	n:80000
KS ci ratio: 1.260881e-01	ci left: 1.118430e-02	ci right 1.270140e-02	k: 954	n:80000
SUCLA2   80000 perm   17 sec   (4838 perm/sec)   p_kst 1.192500e-02   p_cons 6.561625e-01   p_joint 2.120750e-01

Joint ci ratio: 2.544670e-02	ci left: 2.059936e-01	ci right 2.113141e-01	k: 18778	n:90000
Cons ci ratio: 9.478892e-03	ci left: 6.520842e-01	ci right 6.583058e-01	k: 58968	n:90000
KS ci ratio: 1.188421e-01	ci left: 1.123413e-02	ci right 1.266426e-02	k: 1074	n:90000
SUCLA2   90000 perm   19 sec   (4745 perm/sec)   p_kst 1.193333e-02   p_cons 6.552000e-01   p_joint 2.086444e-01

Joint ci ratio: 2.414858e-02	ci left: 2.060255e-01	ci right 2.110714e-01	k: 20854	n:100000
Cons ci ratio: 8.999043e-03	ci left: 6.519140e-01	ci right 6.578170e-01	k: 65487	n:100000
KS ci ratio: 1.130526e-01	ci left: 1.120794e-02	ci right 1.256059e-02	k: 1187	n:100000
SUCLA2   100000 perm   21 sec   (4656 perm/sec)   p_kst 1.187000e-02   p_cons 6.548700e-01   p_joint 2.085400e-01

Joint ci ratio: 2.282410e-02	ci left: 2.090355e-01	ci right 2.138706e-01	k: 23259	n:110000
Cons ci ratio: 8.591597e-03	ci left: 6.514536e-01	ci right 6.570838e-01	k: 71970	n:110000
KS ci ratio: 1.081606e-01	ci left: 1.116136e-02	ci right 1.244639e-02	k: 1297	n:110000
SUCLA2   110000 perm   24 sec   (4569 perm/sec)   p_kst 1.179091e-02   p_cons 6.542727e-01   p_joint 2.114455e-01

Joint ci ratio: 2.183634e-02	ci left: 2.093832e-01	ci right 2.140141e-01	k: 25403	n:120000
Cons ci ratio: 8.231853e-03	ci left: 6.512423e-01	ci right 6.566336e-01	k: 78473	n:120000
KS ci ratio: 1.030053e-01	ci left: 1.131037e-02	ci right 1.254672e-02	k: 1430	n:120000
SUCLA2   120000 perm   27 sec   (4487 perm/sec)   p_kst 1.191667e-02   p_cons 6.539417e-01   p_joint 2.116917e-01

Joint ci ratio: 2.099904e-02	ci left: 2.091678e-01	ci right 2.136143e-01	k: 27480	n:130000
Cons ci ratio: 7.907894e-03	ci left: 6.514069e-01	ci right 6.565862e-01	k: 85020	n:130000
KS ci ratio: 9.887557e-02	ci left: 1.135513e-02	ci right 1.254372e-02	k: 1552	n:130000
SUCLA2   130000 perm   29 sec   (4412 perm/sec)   p_kst 1.193846e-02   p_cons 6.540000e-01   p_joint 2.113846e-01

Outputting figure to mutsig2_images.part000000000169/SUCLA2.2_1436_130000_0.011938_0.654_0.21138.png
                gene_name: SUCLA2
               theta_stop: 0.099 
                    nperm: 130000 
                     p_ks: 0.012 
        ci_ks_bounds_left: 0.011 
       ci_ks_bounds_right: 0.013 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.21 

Current progress: 70 percent done.
SUCNR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.017651e-01	ci left: 1.225867e-01	ci right 1.358301e-01	k: 1291	n:10000
Cons ci ratio: 5.322182e-02	ci left: 3.422361e-01	ci right 3.610504e-01	k: 3516	n:10000
KS ci ratio: 1.093867e-01	ci left: 1.075413e-01	ci right 1.200846e-01	k: 1137	n:10000
SUCNR1   10000 perm   1 sec   (6809 perm/sec)   p_kst 1.137000e-01   p_cons 3.516000e-01   p_joint 1.291000e-01

Joint ci ratio: 4.472000e-02	ci left: 2.713021e-01	ci right 2.837626e-01	k: 5550	n:20000
Cons ci ratio: 3.784481e-02	ci left: 3.424909e-01	ci right 3.557530e-01	k: 6982	n:20000
KS ci ratio: 7.748406e-02	ci left: 1.090370e-01	ci right 1.178757e-01	k: 2268	n:20000
SUCNR1   20000 perm   3 sec   (5954 perm/sec)   p_kst 1.134000e-01   p_cons 3.491000e-01   p_joint 2.775000e-01

Outputting figure to mutsig2_images.part000000000169/SUCNR1.2_1013_20000_0.1134_0.3491_0.2775.png
                gene_name: SUCNR1
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 72 percent done.
SUFU
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.281968e-01	ci left: 7.999369e-02	ci right 9.104916e-02	k: 854	n:10000
Cons ci ratio: 2.344190e-01	ci left: 2.400584e-02	ci right 3.047352e-02	k: 271	n:10000
KS ci ratio: 1.269826e-01	ci left: 8.144990e-02	ci right 9.259206e-02	k: 869	n:10000
SUFU   10000 perm   2 sec   (6616 perm/sec)   p_kst 8.690000e-02   p_cons 2.710000e-02   p_joint 8.540000e-02

Joint ci ratio: 8.402037e-02	ci left: 9.401126e-02	ci right 1.023060e-01	k: 1962	n:20000
Cons ci ratio: 1.646773e-01	ci left: 2.527745e-02	ci right 2.986128e-02	k: 550	n:20000
KS ci ratio: 8.925935e-02	ci left: 8.401093e-02	ci right 9.190934e-02	k: 1758	n:20000
SUFU   20000 perm   3 sec   (5851 perm/sec)   p_kst 8.790000e-02   p_cons 2.750000e-02   p_joint 9.810000e-02

Joint ci ratio: 7.557357e-02	ci left: 7.918129e-02	ci right 8.543321e-02	k: 2468	n:30000
Cons ci ratio: 1.341676e-01	ci left: 2.580763e-02	ci right 2.955126e-02	k: 829	n:30000
KS ci ratio: 7.376517e-02	ci left: 8.285097e-02	ci right 8.922946e-02	k: 2580	n:30000
SUFU   30000 perm   5 sec   (5538 perm/sec)   p_kst 8.600000e-02   p_cons 2.763333e-02   p_joint 8.226667e-02

Joint ci ratio: 7.226242e-02	ci left: 6.604343e-02	ci right 7.101942e-02	k: 2740	n:40000
Cons ci ratio: 1.177712e-01	ci left: 2.536067e-02	ci right 2.855850e-02	k: 1077	n:40000
KS ci ratio: 6.422364e-02	ci left: 8.245714e-02	ci right 8.795325e-02	k: 3407	n:40000
SUFU   40000 perm   8 sec   (5330 perm/sec)   p_kst 8.517500e-02   p_cons 2.692500e-02   p_joint 6.850000e-02

Joint ci ratio: 6.205891e-02	ci left: 7.160202e-02	ci right 7.620760e-02	k: 3694	n:50000
Cons ci ratio: 1.058436e-01	ci left: 2.528505e-02	ci right 2.813026e-02	k: 1334	n:50000
KS ci ratio: 5.750992e-02	ci left: 8.256968e-02	ci right 8.747862e-02	k: 4250	n:50000
SUFU   50000 perm   10 sec   (5175 perm/sec)   p_kst 8.500000e-02   p_cons 2.668000e-02   p_joint 7.388000e-02

Joint ci ratio: 5.400706e-02	ci left: 7.853258e-02	ci right 8.290808e-02	k: 4842	n:60000
Cons ci ratio: 9.655981e-02	ci left: 2.544099e-02	ci right 2.803840e-02	k: 1603	n:60000
KS ci ratio: 5.238258e-02	ci left: 8.312612e-02	ci right 8.761408e-02	k: 5121	n:60000
SUFU   60000 perm   12 sec   (5039 perm/sec)   p_kst 8.535000e-02   p_cons 2.671667e-02   p_joint 8.070000e-02

Outputting figure to mutsig2_images.part000000000169/SUFU.2_1513_60000_0.08535_0.026717_0.0807.png
                gene_name: SUFU
               theta_stop: 0.097 
                    nperm: 60000 
                     p_ks: 0.085 
        ci_ks_bounds_left: 0.083 
       ci_ks_bounds_right: 0.088 
                   p_cons: 0.027 
      ci_cons_bounds_left: 0.025 
     ci_cons_bounds_right: 0.028 
                  p_joint: 0.081 
     ci_joint_bounds_left: 0.079 
    ci_joint_bounds_right: 0.083 

Current progress: 74 percent done.
SULT1A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.321448e-02	ci left: 1.739892e-01	ci right 1.891967e-01	k: 1815	n:10000
Cons ci ratio: 8.219310e-02	ci left: 1.776288e-01	ci right 1.929550e-01	k: 1852	n:10000
KS ci ratio: 3.928828e-02	ci left: 4.889518e-01	ci right 5.086489e-01	k: 4988	n:10000
SULT1A1   10000 perm   1 sec   (6819 perm/sec)   p_kst 4.988000e-01   p_cons 1.852000e-01   p_joint 1.815000e-01

Outputting figure to mutsig2_images.part000000000169/SULT1A1.2_1062_10000_0.4988_0.1852_0.1815.png
                gene_name: SULT1A1
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.19 

Current progress: 76 percent done.
SULT1A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.276264e-01	ci left: 8.067319e-02	ci right 9.176924e-02	k: 861	n:10000
Cons ci ratio: 1.008262e-01	ci left: 1.246409e-01	ci right 1.379747e-01	k: 1312	n:10000
KS ci ratio: 1.202867e-01	ci left: 9.019709e-02	ci right 1.018395e-01	k: 959	n:10000
SULT1A2   10000 perm   1 sec   (7166 perm/sec)   p_kst 9.590000e-02   p_cons 1.312000e-01   p_joint 8.610000e-02

Joint ci ratio: 5.491358e-02	ci left: 1.974439e-01	ci right 2.086425e-01	k: 4060	n:20000
Cons ci ratio: 7.550851e-02	ci left: 1.142482e-01	ci right 1.232630e-01	k: 2374	n:20000
KS ci ratio: 8.466752e-02	ci left: 9.268686e-02	ci right 1.009308e-01	k: 1935	n:20000
SULT1A2   20000 perm   3 sec   (6308 perm/sec)   p_kst 9.675000e-02   p_cons 1.187000e-01   p_joint 2.030000e-01

Outputting figure to mutsig2_images.part000000000169/SULT1A2.2_916_20000_0.09675_0.1187_0.203.png
                gene_name: SULT1A2
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.097 
        ci_ks_bounds_left: 0.093 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 78 percent done.
SULT1C3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.593554e-02	ci left: 5.334756e-01	ci right 5.530992e-01	k: 5433	n:10000
Cons ci ratio: 4.235415e-02	ci left: 4.514920e-01	ci right 4.711305e-01	k: 4613	n:10000
KS ci ratio: 5.689464e-02	ci left: 3.126467e-01	ci right 3.310572e-01	k: 3218	n:10000
SULT1C3   10000 perm   1 sec   (7100 perm/sec)   p_kst 3.218000e-01   p_cons 4.613000e-01   p_joint 5.433000e-01

Outputting figure to mutsig2_images.part000000000169/SULT1C3.2_942_10000_0.3218_0.4613_0.5433.png
                gene_name: SULT1C3
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 80 percent done.
SUPT3H
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.516126e-02	ci left: 4.198695e-01	ci right 4.393715e-01	k: 4296	n:10000
Cons ci ratio: 1.160542e-01	ci left: 9.642692e-02	ci right 1.084058e-01	k: 1023	n:10000
KS ci ratio: 4.311172e-02	ci left: 4.427095e-01	ci right 4.623181e-01	k: 4525	n:10000
SUPT3H   10000 perm   1 sec   (6775 perm/sec)   p_kst 4.525000e-01   p_cons 1.023000e-01   p_joint 4.296000e-01

Joint ci ratio: 3.169999e-02	ci left: 4.263676e-01	ci right 4.401518e-01	k: 8665	n:20000
Cons ci ratio: 8.168708e-02	ci left: 9.901670e-02	ci right 1.074990e-01	k: 2064	n:20000
KS ci ratio: 3.011156e-02	ci left: 4.517257e-01	ci right 4.655864e-01	k: 9173	n:20000
SUPT3H   20000 perm   3 sec   (5999 perm/sec)   p_kst 4.586500e-01   p_cons 1.032000e-01   p_joint 4.332500e-01

Outputting figure to mutsig2_images.part000000000169/SUPT3H.2_1136_20000_0.45865_0.1032_0.43325.png
                gene_name: SUPT3H
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.099 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.44 

Current progress: 83 percent done.
SUPT5H
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.269027e-01	ci left: 8.154699e-02	ci right 9.269490e-02	k: 870	n:10000
KS ci ratio: 2.934000e-02	ci left: 6.314074e-01	ci right 6.503105e-01	k: 6409	n:10000
SUPT5H   10000 perm   2 sec   (5716 perm/sec)   p_kst 6.409000e-01   p_cons 8.700000e-02   p_joint 1

Joint ci ratio: 1.068018e-02	ci left: 8.660217e-01	ci right 8.753702e-01	k: 17415	n:20000
Cons ci ratio: 9.117641e-02	ci left: 8.072986e-02	ci right 8.849141e-02	k: 1691	n:20000
KS ci ratio: 2.072716e-02	ci left: 6.346580e-01	ci right 6.480009e-01	k: 12827	n:20000
SUPT5H   20000 perm   4 sec   (5089 perm/sec)   p_kst 6.413500e-01   p_cons 8.455000e-02   p_joint 8.707500e-01

Outputting figure to mutsig2_images.part000000000169/SUPT5H.2_3380_20000_0.64135_0.08455_0.87075.png
                gene_name: SUPT5H
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.085 
      ci_cons_bounds_left: 0.081 
     ci_cons_bounds_right: 0.088 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 85 percent done.
SUPT7L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.008330e-02	ci left: 7.840118e-01	ci right 8.000177e-01	k: 7921	n:10000
KS ci ratio: 1.560120e-02	ci left: 8.564111e-01	ci right 8.699766e-01	k: 8633	n:10000
SUPT7L   10000 perm   2 sec   (6616 perm/sec)   p_kst 8.633000e-01   p_cons 7.921000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000169/SUPT7L.2_1265_10000_0.8633_0.7921_1.png
                gene_name: SUPT7L
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
SURF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.921578e-02	ci left: 1.888498e-01	ci right 2.045273e-01	k: 1966	n:10000
Cons ci ratio: 1.073223e-01	ci left: 1.113483e-01	ci right 1.240753e-01	k: 1176	n:10000
KS ci ratio: 7.380955e-02	ci left: 2.118147e-01	ci right 2.281487e-01	k: 2199	n:10000
SURF2   10000 perm   1 sec   (7215 perm/sec)   p_kst 2.199000e-01   p_cons 1.176000e-01   p_joint 1.966000e-01

Joint ci ratio: 5.307420e-02	ci left: 2.085805e-01	ci right 2.200027e-01	k: 4285	n:20000
Cons ci ratio: 7.664826e-02	ci left: 1.111998e-01	ci right 1.201123e-01	k: 2312	n:20000
KS ci ratio: 5.176965e-02	ci left: 2.169990e-01	ci right 2.285817e-01	k: 4455	n:20000
SURF2   20000 perm   3 sec   (6342 perm/sec)   p_kst 2.227500e-01   p_cons 1.156000e-01   p_joint 2.142500e-01

Outputting figure to mutsig2_images.part000000000169/SURF2.2_795_20000_0.22275_0.1156_0.21425.png
                gene_name: SURF2
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 89 percent done.
SUSD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.896174e-02	ci left: 8.025773e-01	ci right 8.180415e-01	k: 8104	n:10000
KS ci ratio: 9.381559e-03	ci left: 9.412847e-01	ci right 9.502533e-01	k: 9459	n:10000
SUSD4   10000 perm   2 sec   (6649 perm/sec)   p_kst 9.459000e-01   p_cons 8.104000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000169/SUSD4.2_1658_10000_0.9459_0.8104_1.png
                gene_name: SUSD4
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
SUV39H1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.003217e-02	ci left: 9.337157e-01	ci right 9.432269e-01	k: 9386	n:10000
Cons ci ratio: 2.684594e-02	ci left: 6.714609e-01	ci right 6.898338e-01	k: 6807	n:10000
KS ci ratio: 5.410874e-02	ci left: 3.347852e-01	ci right 3.535056e-01	k: 3441	n:10000
SUV39H1   10000 perm   2 sec   (6498 perm/sec)   p_kst 3.441000e-01   p_cons 6.807000e-01   p_joint 9.386000e-01

Outputting figure to mutsig2_images.part000000000169/SUV39H1.2_1263_10000_0.3441_0.6807_0.9386.png
                gene_name: SUV39H1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 93 percent done.
SUV39H2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.162892e-01	ci left: 2.835310e-02	ci right 3.532314e-02	k: 317	n:10000
Cons ci ratio: 2.536206e-02	ci left: 6.958521e-01	ci right 7.138284e-01	k: 7049	n:10000
KS ci ratio: 3.634162e-01	ci left: 9.412543e-03	ci right 1.367914e-02	k: 114	n:10000
SUV39H2   10000 perm   1 sec   (6815 perm/sec)   p_kst 1.140000e-02   p_cons 7.049000e-01   p_joint 3.170000e-02

Joint ci ratio: 1.991674e-01	ci left: 1.710552e-02	ci right 2.093613e-02	k: 379	n:20000
Cons ci ratio: 1.800745e-02	ci left: 6.968143e-01	ci right 7.095266e-01	k: 14064	n:20000
KS ci ratio: 2.592707e-01	ci left: 9.834707e-03	ci right 1.280992e-02	k: 225	n:20000
SUV39H2   20000 perm   3 sec   (5994 perm/sec)   p_kst 1.125000e-02   p_cons 7.032000e-01   p_joint 1.895000e-02

Joint ci ratio: 1.659150e-01	ci left: 1.674946e-02	ci right 1.981151e-02	k: 547	n:30000
Cons ci ratio: 1.465385e-02	ci left: 6.994012e-01	ci right 7.097592e-01	k: 21138	n:30000
KS ci ratio: 2.193492e-01	ci left: 9.377501e-03	ci right 1.171874e-02	k: 315	n:30000
SUV39H2   30000 perm   5 sec   (5696 perm/sec)   p_kst 1.050000e-02   p_cons 7.046000e-01   p_joint 1.823333e-02

Joint ci ratio: 1.463272e-01	ci left: 1.633401e-02	ci right 1.893669e-02	k: 704	n:40000
Cons ci ratio: 1.262820e-02	ci left: 7.021608e-01	ci right 7.111092e-01	k: 28266	n:40000
KS ci ratio: 1.930743e-01	ci left: 9.214708e-03	ci right 1.120736e-02	k: 407	n:40000
SUV39H2   40000 perm   7 sec   (5500 perm/sec)   p_kst 1.017500e-02   p_cons 7.066500e-01   p_joint 1.760000e-02

Joint ci ratio: 1.297781e-01	ci left: 1.675589e-02	ci right 1.910056e-02	k: 895	n:50000
Cons ci ratio: 1.130620e-02	ci left: 7.022257e-01	ci right 7.102303e-01	k: 35312	n:50000
KS ci ratio: 1.708395e-01	ci left: 9.529293e-03	ci right 1.132823e-02	k: 520	n:50000
SUV39H2   50000 perm   9 sec   (5329 perm/sec)   p_kst 1.040000e-02   p_cons 7.062400e-01   p_joint 1.790000e-02

Joint ci ratio: 1.176490e-01	ci left: 1.709687e-02	ci right 1.925010e-02	k: 1089	n:60000
Cons ci ratio: 1.032792e-02	ci left: 7.023029e-01	ci right 7.096105e-01	k: 42358	n:60000
KS ci ratio: 1.540002e-01	ci left: 9.860094e-03	ci right 1.152108e-02	k: 640	n:60000
SUV39H2   60000 perm   12 sec   (5194 perm/sec)   p_kst 1.066667e-02   p_cons 7.059667e-01   p_joint 1.815000e-02

Joint ci ratio: 1.084739e-01	ci left: 1.731994e-02	ci right 1.932027e-02	k: 1281	n:70000
Cons ci ratio: 9.577495e-03	ci left: 7.018927e-01	ci right 7.086617e-01	k: 49370	n:70000
KS ci ratio: 1.422724e-01	ci left: 9.964798e-03	ci right 1.150473e-02	k: 750	n:70000
SUV39H2   70000 perm   14 sec   (5076 perm/sec)   p_kst 1.071429e-02   p_cons 7.052857e-01   p_joint 1.830000e-02

Joint ci ratio: 1.006367e-01	ci left: 1.767501e-02	ci right 1.956013e-02	k: 1488	n:80000
Cons ci ratio: 8.950007e-03	ci left: 7.025284e-01	ci right 7.088567e-01	k: 56456	n:80000
KS ci ratio: 1.319452e-01	ci left: 1.019202e-02	ci right 1.164378e-02	k: 872	n:80000
SUV39H2   80000 perm   16 sec   (4967 perm/sec)   p_kst 1.090000e-02   p_cons 7.057000e-01   p_joint 1.860000e-02

Joint ci ratio: 9.511657e-02	ci left: 1.764049e-02	ci right 1.941296e-02	k: 1666	n:90000
Cons ci ratio: 8.433188e-03	ci left: 7.029556e-01	ci right 7.089200e-01	k: 63535	n:90000
KS ci ratio: 1.247287e-01	ci left: 1.017804e-02	ci right 1.154265e-02	k: 976	n:90000
SUV39H2   90000 perm   18 sec   (4867 perm/sec)   p_kst 1.084444e-02   p_cons 7.059444e-01   p_joint 1.851111e-02

Joint ci ratio: 9.056546e-02	ci left: 1.755647e-02	ci right 1.923163e-02	k: 1838	n:100000
Cons ci ratio: 8.006296e-03	ci left: 7.028043e-01	ci right 7.084637e-01	k: 70564	n:100000
KS ci ratio: 1.184691e-01	ci left: 1.018801e-02	ci right 1.148060e-02	k: 1082	n:100000
SUV39H2   100000 perm   21 sec   (4766 perm/sec)   p_kst 1.082000e-02   p_cons 7.056400e-01   p_joint 1.838000e-02

Joint ci ratio: 8.593842e-02	ci left: 1.776525e-02	ci right 1.936937e-02	k: 2041	n:110000
Cons ci ratio: 7.631269e-03	ci left: 7.030698e-01	ci right 7.084648e-01	k: 77635	n:110000
KS ci ratio: 1.128745e-01	ci left: 1.023292e-02	ci right 1.146581e-02	k: 1192	n:110000
SUV39H2   110000 perm   24 sec   (4677 perm/sec)   p_kst 1.083636e-02   p_cons 7.057727e-01   p_joint 1.855455e-02

Joint ci ratio: 8.263269e-02	ci left: 1.764710e-02	ci right 1.917630e-02	k: 2208	n:120000
Cons ci ratio: 7.298431e-03	ci left: 7.036387e-01	ci right 7.088013e-01	k: 84747	n:120000
KS ci ratio: 1.085957e-01	ci left: 1.015800e-02	ci right 1.133249e-02	k: 1288	n:120000
SUV39H2   120000 perm   26 sec   (4595 perm/sec)   p_kst 1.073333e-02   p_cons 7.062250e-01   p_joint 1.840000e-02

Joint ci ratio: 7.954488e-02	ci left: 1.760848e-02	ci right 1.907466e-02	k: 2383	n:130000
Cons ci ratio: 7.012530e-03	ci left: 7.037155e-01	ci right 7.086753e-01	k: 91806	n:130000
KS ci ratio: 1.045026e-01	ci left: 1.014780e-02	ci right 1.127418e-02	k: 1391	n:130000
SUV39H2   130000 perm   29 sec   (4509 perm/sec)   p_kst 1.070000e-02   p_cons 7.062000e-01   p_joint 1.833077e-02

Joint ci ratio: 7.653583e-02	ci left: 1.768842e-02	ci right 1.910306e-02	k: 2574	n:140000
Cons ci ratio: 6.752444e-03	ci left: 7.041140e-01	ci right 7.088917e-01	k: 98911	n:140000
KS ci ratio: 1.007039e-01	ci left: 1.016764e-02	ci right 1.125277e-02	k: 1498	n:140000
SUV39H2   140000 perm   32 sec   (4434 perm/sec)   p_kst 1.070000e-02   p_cons 7.065071e-01   p_joint 1.838571e-02

Joint ci ratio: 7.398067e-02	ci left: 1.769315e-02	ci right 1.905889e-02	k: 2755	n:150000
Cons ci ratio: 6.518142e-03	ci left: 7.045357e-01	ci right 7.091496e-01	k: 106027	n:150000
KS ci ratio: 9.704736e-02	ci left: 1.023753e-02	ci right 1.128818e-02	k: 1613	n:150000
SUV39H2   150000 perm   35 sec   (4337 perm/sec)   p_kst 1.075333e-02   p_cons 7.068467e-01   p_joint 1.836667e-02

Outputting figure to mutsig2_images.part000000000169/SUV39H2.2_1069_150000_0.010753_0.70685_0.018367.png
                gene_name: SUV39H2
               theta_stop: 0.097 
                    nperm: 150000 
                     p_ks: 0.011 
        ci_ks_bounds_left: 0.010 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.018 
     ci_joint_bounds_left: 0.018 
    ci_joint_bounds_right: 0.019 

Current progress: 96 percent done.
SYCE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.920980e-02	ci left: 4.899514e-01	ci right 5.096487e-01	k: 4998	n:10000
KS ci ratio: 5.973631e-02	ci left: 2.919197e-01	ci right 3.099964e-01	k: 3009	n:10000
SYCE1   10000 perm   1 sec   (6806 perm/sec)   p_kst 3.009000e-01   p_cons 4.998000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000169/SYCE1.2_1151_10000_0.3009_0.4998_1.png
                gene_name: SYCE1
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
SYCE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.059863e-02	ci left: 4.725626e-01	ci right 4.922477e-01	k: 4824	n:10000
Cons ci ratio: 6.268811e-02	ci left: 2.722050e-01	ci right 2.899227e-01	k: 2810	n:10000
KS ci ratio: 2.016861e-02	ci left: 7.825926e-01	ci right 7.986378e-01	k: 7907	n:10000
SYCE2   10000 perm   1 sec   (7148 perm/sec)   p_kst 7.907000e-01   p_cons 2.810000e-01   p_joint 4.824000e-01

Outputting figure to mutsig2_images.part000000000169/SYCE2.2_681_10000_0.7907_0.281_0.4824.png
                gene_name: SYCE2
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000169
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 169 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1646>
Subject: Job 8004597: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1646>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000170> was used as the working directory.
Started at Sun Nov 11 15:20:44 2012
Results reported at Sun Nov 11 15:35:32 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000170.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000170.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 170  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000170.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    936.44 sec.
    Max Memory :      4686 MB
    Max Swap   :      7071 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
170
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 170
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 170: processing genes 15290 - 15380
Calculating significance of each gene.
Using projection method.
15290	SYN1	4.910949e-01
15291	SYN2	5.287774e-01
15292	SYN3	1.925940e-01
15293	SYNC	1
15294	SYNCRIP	1.052204e-01
15295	SYNE1	1
15296	SYNE2	9.999998e-01
15297	SYNGAP1	1
15298	SYNGR1	5.049384e-01
15299	SYNGR2	1
15300	SYNGR3	1
15301	SYNGR4	3.556324e-01
15302	SYNJ1	1
15303	SYNJ2	9.459955e-01
15304	SYNJ2BP	1
15305	SYNM	1
15306	SYNPO	9.346028e-01
15307	SYNPO2	9.269223e-01
15308	SYNPO2L	1
15309	SYNPR	1
15310	SYNRG	2.516711e-01
15311	SYP	5.570483e-01
15312	SYPL1	4.888397e-01
15313	SYPL2	1
15314	SYS1	1
15315	SYT1	7.911702e-02
15316	SYT10	1.328815e-01
15317	SYT11	2.417677e-01
15318	SYT12	1
15319	SYT13	1.399104e-01
15320	SYT14	5.670063e-01
15321	SYT15	1
15322	SYT16	1
15323	SYT17	7.284780e-01
15324	SYT2	1.641278e-01
15325	SYT3	3.569133e-01
15326	SYT4	7.923416e-01
15327	SYT5	2.075844e-01
15328	SYT6	8.921750e-02
15329	SYT7	1.062649e-01
15330	SYT8	1
15331	SYT9	1
15332	SYTL1	7.455985e-01
15333	SYTL2	9.530164e-01
15334	SYTL3	6.667282e-01
15335	SYTL4	6.183340e-01
15336	SYTL5	6.366879e-01
15337	SYVN1	8.972244e-01
15338	T	2.677799e-01
15339	TAAR1	1.625704e-01
15340	TAAR2	3.076688e-02
15341	TAAR5	1.706254e-01
15342	TAAR6	6.268056e-01
15343	TAAR8	1
15344	TAAR9	1.477058e-01
15345	TAB1	7.178965e-01
15346	TAB2	1
15347	TAB3	1.442254e-01
15348	TAC1	3.028834e-02
15349	TAC3	1
15350	TAC4	1
15351	TACC1	1
15352	TACC2	1
15353	TACC3	1
15354	TACO1	1
15355	TACR1	1.403741e-01
15356	TACR2	8.154245e-01
15357	TACR3	5.832331e-01
15358	TACSTD2	1
15359	TADA1	3.399256e-01
15360	TADA2A	1
15361	TADA2B	1.719909e-01
15362	TADA3	7.173843e-01
15363	TAF1	5.944384e-02
15364	TAF10	1
15365	TAF11	5.495568e-01
15366	TAF12	1
15367	TAF13	1
15368	TAF15	7.986413e-01
15369	TAF1A	6.490839e-02
15370	TAF1B	7.220101e-01
15371	TAF1C	9.564867e-01
15372	TAF1D	1
15373	TAF1L	5.459190e-02
15374	TAF2	3.672127e-02
15375	TAF3	9.331618e-01
15376	TAF4	1
15377	TAF4B	3.933712e-01
15378	TAF5	8.173202e-01
15379	TAF5L	1
15380	TAF6	1
Done

Running MutSig 2:
Scatter job 170: processing genes 15290 - 15380
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SYNE1
Processing conservation and coverage...
36% 73% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.202549e-01	ci left: 2.731161e-02	ci right 3.416536e-02	k: 306	n:10000
Cons ci ratio: 1.623245e-01	ci left: 5.061180e-02	ci right 5.964956e-02	k: 550	n:10000
KS ci ratio: 1.235896e-01	ci left: 8.572423e-02	ci right 9.711508e-02	k: 913	n:10000
SYNE1   10000 perm   6 sec   (1592 perm/sec)   p_kst 9.130000e-02   p_cons 5.500000e-02   p_joint 3.060000e-02

Joint ci ratio: 1.837425e-01	ci left: 2.020279e-02	ci right 2.433773e-02	k: 444	n:20000
Cons ci ratio: 1.155061e-01	ci left: 5.129666e-02	ci right 5.763366e-02	k: 1088	n:20000
KS ci ratio: 8.800347e-02	ci left: 8.626460e-02	ci right 9.425499e-02	k: 1804	n:20000
SYNE1   20000 perm   15 sec   (1330 perm/sec)   p_kst 9.020000e-02   p_cons 5.440000e-02   p_joint 2.220000e-02

Joint ci ratio: 1.520778e-01	ci left: 2.001685e-02	ci right 2.334335e-02	k: 649	n:30000
Cons ci ratio: 9.481852e-02	ci left: 5.133870e-02	ci right 5.648146e-02	k: 1616	n:30000
KS ci ratio: 7.267677e-02	ci left: 8.517822e-02	ci right 9.163508e-02	k: 2651	n:30000
SYNE1   30000 perm   22 sec   (1364 perm/sec)   p_kst 8.836667e-02   p_cons 5.386667e-02   p_joint 2.163333e-02

Joint ci ratio: 1.026120e-01	ci left: 3.339097e-02	ci right 3.702691e-02	k: 1407	n:40000
Cons ci ratio: 8.151781e-02	ci left: 5.241792e-02	ci right 5.689701e-02	k: 2185	n:40000
KS ci ratio: 6.303797e-02	ci left: 8.536445e-02	ci right 9.094551e-02	k: 3525	n:40000
SYNE1   40000 perm   29 sec   (1375 perm/sec)   p_kst 8.812500e-02   p_cons 5.462500e-02   p_joint 3.517500e-02

Joint ci ratio: 9.327260e-02	ci left: 3.252633e-02	ci right 3.572806e-02	k: 1705	n:50000
Cons ci ratio: 7.327427e-02	ci left: 5.215276e-02	ci right 5.613920e-02	k: 2706	n:50000
KS ci ratio: 5.665478e-02	ci left: 8.489904e-02	ci right 8.986899e-02	k: 4368	n:50000
SYNE1   50000 perm   36 sec   (1382 perm/sec)   p_kst 8.736000e-02   p_cons 5.412000e-02   p_joint 3.410000e-02

Outputting figure to mutsig2_images.part000000000170/SYNE1.68_27068_50000_0.08736_0.05412_0.0341.png
                gene_name: SYNE1
               theta_stop: 0.093 
                    nperm: 50000 
                     p_ks: 0.087 
        ci_ks_bounds_left: 0.085 
       ci_ks_bounds_right: 0.090 
                   p_cons: 0.054 
      ci_cons_bounds_left: 0.052 
     ci_cons_bounds_right: 0.056 
                  p_joint: 0.034 
     ci_joint_bounds_left: 0.033 
    ci_joint_bounds_right: 0.036 

Current progress: 2 percent done.
SYNE2
Processing conservation and coverage...
47% 94% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.602799e-02	ci left: 8.497808e-01	ci right 8.636107e-01	k: 8568	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
SYNE2   10000 perm   5 sec   (2151 perm/sec)   p_kst 1   p_cons 8.568000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000170/SYNE2.28_21229_10000_1_0.8568_1.png
                gene_name: SYNE2
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 4 percent done.
TAF1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.782673e-02	ci left: 6.555515e-01	ci right 6.741524e-01	k: 6649	n:10000
Cons ci ratio: 6.281241e-02	ci left: 2.714129e-01	ci right 2.891153e-01	k: 2802	n:10000
KS ci ratio: 1.968030e-02	ci left: 7.907046e-01	ci right 8.065211e-01	k: 7987	n:10000
TAF1L   10000 perm   3 sec   (3882 perm/sec)   p_kst 7.987000e-01   p_cons 2.802000e-01   p_joint 6.649000e-01

Outputting figure to mutsig2_images.part000000000170/TAF1L.20_5485_10000_0.7987_0.2802_0.6649.png
                gene_name: TAF1L
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.67 

Current progress: 6 percent done.
TAF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.014946e-01	ci left: 1.231736e-01	ci right 1.364429e-01	k: 1297	n:10000
Cons ci ratio: 5.768586e-02	ci left: 3.066941e-01	ci right 3.250132e-01	k: 3158	n:10000
KS ci ratio: 1.149936e-01	ci left: 9.808295e-02	ci right 1.101488e-01	k: 1040	n:10000
TAF1   10000 perm   3 sec   (3967 perm/sec)   p_kst 1.040000e-01   p_cons 3.158000e-01   p_joint 1.297000e-01

Joint ci ratio: 7.467253e-02	ci left: 1.165597e-01	ci right 1.256508e-01	k: 2421	n:20000
Cons ci ratio: 4.077128e-02	ci left: 3.096086e-01	ci right 3.225449e-01	k: 6321	n:20000
KS ci ratio: 8.217607e-02	ci left: 9.793682e-02	ci right 1.063792e-01	k: 2042	n:20000
TAF1   20000 perm   6 sec   (3614 perm/sec)   p_kst 1.021000e-01   p_cons 3.160500e-01   p_joint 1.210500e-01

Outputting figure to mutsig2_images.part000000000170/TAF1.14_5834_20000_0.1021_0.31605_0.12105.png
                gene_name: TAF1
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.098 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 8 percent done.
TAF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.132751e-02	ci left: 6.005602e-01	ci right 6.197756e-01	k: 6102	n:10000
Cons ci ratio: 4.376126e-02	ci left: 4.353266e-01	ci right 4.549054e-01	k: 4451	n:10000
KS ci ratio: 3.846421e-02	ci left: 4.995504e-01	ci right 5.192441e-01	k: 5094	n:10000
TAF2   10000 perm   2 sec   (4211 perm/sec)   p_kst 5.094000e-01   p_cons 4.451000e-01   p_joint 6.102000e-01

Outputting figure to mutsig2_images.part000000000170/TAF2.10_3704_10000_0.5094_0.4451_0.6102.png
                gene_name: TAF2
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 10 percent done.
SYTL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.240747e-02	ci left: 1.454077e-01	ci right 1.595954e-01	k: 1524	n:10000
Cons ci ratio: 6.276574e-02	ci left: 2.717099e-01	ci right 2.894181e-01	k: 2805	n:10000
KS ci ratio: 8.846994e-02	ci left: 1.567914e-01	ci right 1.714049e-01	k: 1640	n:10000
SYTL2   10000 perm   2 sec   (4100 perm/sec)   p_kst 1.640000e-01   p_cons 2.805000e-01   p_joint 1.524000e-01

Outputting figure to mutsig2_images.part000000000170/SYTL2.8_5361_10000_0.164_0.2805_0.1524.png
                gene_name: SYTL2
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 12 percent done.
SYNRG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.556745e-01	ci left: 9.867770e-03	ci right 1.422343e-02	k: 119	n:10000
Cons ci ratio: 6.035677e-01	ci left: 2.943789e-03	ci right 5.558045e-03	k: 41	n:10000
KS ci ratio: 1.097680e-01	ci left: 1.068582e-01	ci right 1.193681e-01	k: 1130	n:10000
SYNRG   10000 perm   2 sec   (4627 perm/sec)   p_kst 1.130000e-01   p_cons 4.100000e-03   p_joint 1.190000e-02

Joint ci ratio: 3.313245e-01	ci left: 5.799905e-03	ci right 8.146877e-03	k: 138	n:20000
Cons ci ratio: 4.517819e-01	ci left: 2.906379e-03	ci right 4.642815e-03	k: 74	n:20000
KS ci ratio: 7.854219e-02	ci left: 1.063834e-01	ci right 1.151301e-01	k: 2214	n:20000
SYNRG   20000 perm   5 sec   (4207 perm/sec)   p_kst 1.107000e-01   p_cons 3.700000e-03   p_joint 6.900000e-03

Joint ci ratio: 3.404351e-01	ci left: 3.652208e-03	ci right 5.179552e-03	k: 131	n:30000
Cons ci ratio: 3.800645e-01	ci left: 2.863519e-03	ci right 4.235401e-03	k: 105	n:30000
KS ci ratio: 6.355584e-02	ci left: 1.089454e-01	ci right 1.161298e-01	k: 3375	n:30000
SYNRG   30000 perm   7 sec   (4043 perm/sec)   p_kst 1.125000e-01   p_cons 3.500000e-03   p_joint 4.366667e-03

Joint ci ratio: 3.975279e-01	ci left: 1.944427e-03	ci right 2.930033e-03	k: 96	n:40000
Cons ci ratio: 3.486666e-01	ci left: 2.601872e-03	ci right 3.722182e-03	k: 125	n:40000
KS ci ratio: 5.487872e-02	ci left: 1.100119e-01	ci right 1.162444e-01	k: 4524	n:40000
SYNRG   40000 perm   10 sec   (3936 perm/sec)   p_kst 1.131000e-01   p_cons 3.125000e-03   p_joint 2.400000e-03

Joint ci ratio: 4.105495e-01	ci left: 1.447653e-03	ci right 2.212049e-03	k: 90	n:50000
Cons ci ratio: 3.046646e-01	ci left: 2.797855e-03	ci right 3.821154e-03	k: 164	n:50000
KS ci ratio: 4.907166e-02	ci left: 1.103958e-01	ci right 1.159692e-01	k: 5658	n:50000
SYNRG   50000 perm   13 sec   (3848 perm/sec)   p_kst 1.131600e-01   p_cons 3.280000e-03   p_joint 1.800000e-03

Joint ci ratio: 2.059797e-01	ci left: 5.381914e-03	ci right 6.633261e-03	k: 359	n:60000
Cons ci ratio: 2.788273e-01	ci left: 2.825927e-03	ci right 3.756477e-03	k: 196	n:60000
KS ci ratio: 4.471377e-02	ci left: 1.110053e-01	ci right 1.160988e-01	k: 6812	n:60000
SYNRG   60000 perm   16 sec   (3773 perm/sec)   p_kst 1.135333e-01   p_cons 3.266667e-03   p_joint 5.983333e-03

Joint ci ratio: 3.751728e-01	ci left: 1.265802e-03	ci right 1.862455e-03	k: 108	n:70000
Cons ci ratio: 3.011721e-01	ci left: 2.051143e-03	ci right 2.791068e-03	k: 168	n:70000
KS ci ratio: 4.143371e-02	ci left: 1.110175e-01	ci right 1.157289e-01	k: 7935	n:70000
SYNRG   70000 perm   19 sec   (3706 perm/sec)   p_kst 1.133571e-01   p_cons 2.400000e-03   p_joint 1.542857e-03

Joint ci ratio: 3.575747e-01	ci left: 1.232420e-03	ci right 1.779755e-03	k: 119	n:80000
Cons ci ratio: 2.825602e-01	ci left: 2.061224e-03	ci right 2.750655e-03	k: 191	n:80000
KS ci ratio: 3.879563e-02	ci left: 1.109751e-01	ci right 1.153780e-01	k: 9053	n:80000
SYNRG   80000 perm   22 sec   (3644 perm/sec)   p_kst 1.131625e-01   p_cons 2.387500e-03   p_joint 1.487500e-03

Joint ci ratio: 3.805177e-01	ci left: 9.543138e-04	ci right 1.412148e-03	k: 105	n:90000
Cons ci ratio: 2.670208e-01	ci left: 2.070160e-03	ci right 2.718135e-03	k: 214	n:90000
KS ci ratio: 3.651174e-02	ci left: 1.114566e-01	ci right 1.156128e-01	k: 10217	n:90000
SYNRG   90000 perm   25 sec   (3586 perm/sec)   p_kst 1.135222e-01   p_cons 2.377778e-03   p_joint 1.166667e-03

Joint ci ratio: 3.637499e-01	ci left: 9.495334e-04	ci right 1.380242e-03	k: 115	n:100000
Cons ci ratio: 2.527298e-01	ci left: 2.096874e-03	ci right 2.712556e-03	k: 239	n:100000
KS ci ratio: 3.447786e-02	ci left: 1.124930e-01	ci right 1.164494e-01	k: 11446	n:100000
SYNRG   100000 perm   28 sec   (3531 perm/sec)   p_kst 1.144600e-01   p_cons 2.390000e-03   p_joint 1.150000e-03

Joint ci ratio: 3.622097e-01	ci left: 8.714672e-04	ci right 1.264694e-03	k: 116	n:110000
Cons ci ratio: 2.378285e-01	ci left: 2.170770e-03	ci right 2.765038e-03	k: 270	n:110000
KS ci ratio: 3.289357e-02	ci left: 1.124615e-01	ci right 1.162316e-01	k: 12577	n:110000
SYNRG   110000 perm   32 sec   (3478 perm/sec)   p_kst 1.143364e-01   p_cons 2.454545e-03   p_joint 1.054545e-03

Joint ci ratio: 2.249127e-01	ci left: 2.241102e-03	ci right 2.816693e-03	k: 302	n:120000
Cons ci ratio: 2.223524e-01	ci left: 2.296175e-03	ci right 2.878278e-03	k: 309	n:120000
KS ci ratio: 3.155745e-02	ci left: 1.121325e-01	ci right 1.157361e-01	k: 13671	n:120000
SYNRG   120000 perm   35 sec   (3427 perm/sec)   p_kst 1.139250e-01   p_cons 2.575000e-03   p_joint 2.516667e-03

Joint ci ratio: 2.202482e-01	ci left: 2.163125e-03	ci right 2.705604e-03	k: 315	n:130000
Cons ci ratio: 2.116895e-01	ci left: 2.352335e-03	ci right 2.916369e-03	k: 341	n:130000
KS ci ratio: 3.036727e-02	ci left: 1.118875e-01	ci right 1.153452e-01	k: 14769	n:130000
SYNRG   130000 perm   39 sec   (3374 perm/sec)   p_kst 1.136077e-01   p_cons 2.623077e-03   p_joint 2.423077e-03

Joint ci ratio: 2.223936e-01	ci left: 1.968112e-03	ci right 2.467149e-03	k: 309	n:140000
Cons ci ratio: 2.060489e-01	ci left: 2.312922e-03	ci right 2.850867e-03	k: 360	n:140000
KS ci ratio: 2.925968e-02	ci left: 1.119706e-01	ci right 1.153026e-01	k: 15908	n:140000
SYNRG   140000 perm   42 sec   (3323 perm/sec)   p_kst 1.136286e-01   p_cons 2.571429e-03   p_joint 2.207143e-03

Joint ci ratio: 2.206342e-01	ci left: 1.868377e-03	ci right 2.337868e-03	k: 314	n:150000
Cons ci ratio: 2.005718e-01	ci left: 2.285270e-03	ci right 2.800925e-03	k: 380	n:150000
KS ci ratio: 2.820072e-02	ci left: 1.125018e-01	ci right 1.157264e-01	k: 17116	n:150000
SYNRG   150000 perm   46 sec   (3275 perm/sec)   p_kst 1.141067e-01   p_cons 2.533333e-03   p_joint 2.093333e-03

Joint ci ratio: 2.264868e-01	ci left: 1.657182e-03	ci right 2.086191e-03	k: 298	n:160000
Cons ci ratio: 1.928751e-01	ci left: 2.326655e-03	ci right 2.829140e-03	k: 411	n:160000
KS ci ratio: 2.730619e-02	ci left: 1.125460e-01	ci right 1.156680e-01	k: 18256	n:160000
SYNRG   160000 perm   49 sec   (3233 perm/sec)   p_kst 1.141000e-01   p_cons 2.568750e-03   p_joint 1.862500e-03

Joint ci ratio: 2.272620e-01	ci left: 1.548594e-03	ci right 1.951056e-03	k: 296	n:170000
Cons ci ratio: 1.855819e-01	ci left: 2.374723e-03	ci right 2.866013e-03	k: 444	n:170000
KS ci ratio: 2.648171e-02	ci left: 1.126625e-01	ci right 1.156918e-01	k: 19409	n:170000
SYNRG   170000 perm   54 sec   (3177 perm/sec)   p_kst 1.141706e-01   p_cons 2.611765e-03   p_joint 1.741176e-03

Joint ci ratio: 1.451908e-01	ci left: 3.740416e-03	ci right 4.331289e-03	k: 725	n:180000
Cons ci ratio: 1.794347e-01	ci left: 2.407153e-03	ci right 2.886866e-03	k: 475	n:180000
KS ci ratio: 2.604764e-02	ci left: 1.103035e-01	ci right 1.132201e-01	k: 20116	n:180000
SYNRG   180000 perm   57 sec   (3137 perm/sec)   p_kst 1.117556e-01   p_cons 2.638889e-03   p_joint 4.027778e-03

Joint ci ratio: 1.448063e-01	ci left: 3.563817e-03	ci right 4.125172e-03	k: 729	n:190000
Cons ci ratio: 1.752523e-01	ci left: 2.396139e-03	ci right 2.861348e-03	k: 498	n:190000
KS ci ratio: 2.535064e-02	ci left: 1.103602e-01	ci right 1.131990e-01	k: 21237	n:190000
SYNRG   190000 perm   61 sec   (3101 perm/sec)   p_kst 1.117737e-01   p_cons 2.621053e-03   p_joint 3.836842e-03

Joint ci ratio: 1.519873e-01	ci left: 3.062997e-03	ci right 3.571567e-03	k: 662	n:200000
Cons ci ratio: 1.708577e-01	ci left: 2.400702e-03	ci right 2.853905e-03	k: 524	n:200000
KS ci ratio: 2.467322e-02	ci left: 1.106807e-01	ci right 1.134506e-01	k: 22412	n:200000
SYNRG   200000 perm   65 sec   (3064 perm/sec)   p_kst 1.120600e-01   p_cons 2.620000e-03   p_joint 3.310000e-03

Joint ci ratio: 1.532802e-01	ci left: 2.866737e-03	ci right 3.347141e-03	k: 651	n:210000
Cons ci ratio: 1.669299e-01	ci left: 2.400399e-03	ci right 2.842080e-03	k: 549	n:210000
KS ci ratio: 2.409397e-02	ci left: 1.105878e-01	ci right 1.132895e-01	k: 23506	n:210000
SYNRG   210000 perm   69 sec   (3031 perm/sec)   p_kst 1.119333e-01   p_cons 2.614286e-03   p_joint 3.100000e-03

Joint ci ratio: 1.568286e-01	ci left: 2.609699e-03	ci right 3.058104e-03	k: 622	n:220000
Cons ci ratio: 1.624138e-01	ci left: 2.426395e-03	ci right 2.859602e-03	k: 580	n:220000
KS ci ratio: 2.352355e-02	ci left: 1.107574e-01	ci right 1.133983e-01	k: 24656	n:220000
SYNRG   220000 perm   73 sec   (2997 perm/sec)   p_kst 1.120727e-01   p_cons 2.636364e-03   p_joint 2.827273e-03

Joint ci ratio: 1.557145e-01	ci left: 2.533826e-03	ci right 2.965813e-03	k: 631	n:230000
Cons ci ratio: 1.587664e-01	ci left: 2.433574e-03	ci right 2.857375e-03	k: 607	n:230000
KS ci ratio: 2.299030e-02	ci left: 1.109258e-01	ci right 1.135100e-01	k: 25809	n:230000
SYNRG   230000 perm   78 sec   (2960 perm/sec)   p_kst 1.122130e-01   p_cons 2.639130e-03   p_joint 2.743478e-03

Joint ci ratio: 1.518000e-01	ci left: 2.560463e-03	ci right 2.985020e-03	k: 664	n:240000
Cons ci ratio: 1.554770e-01	ci left: 2.436250e-03	ci right 2.850907e-03	k: 633	n:240000
KS ci ratio: 2.249081e-02	ci left: 1.110892e-01	ci right 1.136202e-01	k: 26964	n:240000
SYNRG   240000 perm   82 sec   (2924 perm/sec)   p_kst 1.123500e-01   p_cons 2.637500e-03   p_joint 2.766667e-03

Joint ci ratio: 1.617435e-01	ci left: 2.154392e-03	ci right 2.537292e-03	k: 585	n:250000
Cons ci ratio: 1.515801e-01	ci left: 2.465732e-03	ci right 2.873934e-03	k: 666	n:250000
KS ci ratio: 2.203266e-02	ci left: 1.111484e-01	ci right 1.136286e-01	k: 28096	n:250000
SYNRG   250000 perm   87 sec   (2889 perm/sec)   p_kst 1.123840e-01   p_cons 2.664000e-03   p_joint 2.340000e-03

Joint ci ratio: 1.590531e-01	ci left: 2.145365e-03	ci right 2.519713e-03	k: 605	n:260000
Cons ci ratio: 1.490334e-01	ci left: 2.456030e-03	ci right 2.855186e-03	k: 689	n:260000
KS ci ratio: 2.160059e-02	ci left: 1.112113e-01	ci right 1.136435e-01	k: 29230	n:260000
SYNRG   260000 perm   91 sec   (2855 perm/sec)   p_kst 1.124231e-01   p_cons 2.650000e-03   p_joint 2.326923e-03

Joint ci ratio: 1.598551e-01	ci left: 2.044563e-03	ci right 2.403293e-03	k: 599	n:270000
Cons ci ratio: 1.465079e-01	ci left: 2.450667e-03	ci right 2.841612e-03	k: 713	n:270000
KS ci ratio: 2.119377e-02	ci left: 1.112625e-01	ci right 1.136495e-01	k: 30362	n:270000
SYNRG   270000 perm   96 sec   (2822 perm/sec)   p_kst 1.124519e-01   p_cons 2.640741e-03   p_joint 2.218519e-03

Joint ci ratio: 1.719091e-01	ci left: 1.694224e-03	ci right 2.016227e-03	k: 518	n:280000
Cons ci ratio: 1.447968e-01	ci left: 2.421643e-03	ci right 2.803054e-03	k: 730	n:280000
KS ci ratio: 2.055840e-02	ci left: 1.137423e-01	ci right 1.161085e-01	k: 32178	n:280000
SYNRG   280000 perm   100 sec   (2788 perm/sec)   p_kst 1.149214e-01   p_cons 2.607143e-03   p_joint 1.850000e-03

Joint ci ratio: 1.677562e-01	ci left: 1.721649e-03	ci right 2.040161e-03	k: 544	n:290000
Cons ci ratio: 1.429527e-01	ci left: 2.401295e-03	ci right 2.774274e-03	k: 749	n:290000
KS ci ratio: 2.023111e-02	ci left: 1.134600e-01	ci right 1.157822e-01	k: 33239	n:290000
SYNRG   290000 perm   105 sec   (2757 perm/sec)   p_kst 1.146172e-01   p_cons 2.582759e-03   p_joint 1.875862e-03

Joint ci ratio: 1.649063e-01	ci left: 1.724958e-03	ci right 2.038123e-03	k: 563	n:300000
Cons ci ratio: 1.404468e-01	ci left: 2.408061e-03	ci right 2.774986e-03	k: 776	n:300000
KS ci ratio: 1.988101e-02	ci left: 1.135817e-01	ci right 1.158658e-01	k: 34416	n:300000
SYNRG   300000 perm   110 sec   (2726 perm/sec)   p_kst 1.147200e-01   p_cons 2.586667e-03   p_joint 1.876667e-03

Joint ci ratio: 1.649113e-01	ci left: 1.669310e-03	ci right 1.972382e-03	k: 563	n:310000
Cons ci ratio: 1.389371e-01	ci left: 2.383302e-03	ci right 2.742227e-03	k: 793	n:310000
KS ci ratio: 1.955562e-02	ci left: 1.136220e-01	ci right 1.158691e-01	k: 35570	n:310000
SYNRG   310000 perm   115 sec   (2695 perm/sec)   p_kst 1.147419e-01   p_cons 2.558065e-03   p_joint 1.816129e-03

Joint ci ratio: 1.639002e-01	ci left: 1.638117e-03	ci right 1.933522e-03	k: 570	n:320000
Cons ci ratio: 1.369680e-01	ci left: 2.378218e-03	ci right 2.730887e-03	k: 816	n:320000
KS ci ratio: 1.924363e-02	ci left: 1.136819e-01	ci right 1.158939e-01	k: 36731	n:320000
SYNRG   320000 perm   120 sec   (2665 perm/sec)   p_kst 1.147844e-01   p_cons 2.550000e-03   p_joint 1.781250e-03

Joint ci ratio: 1.636179e-01	ci left: 1.594286e-03	ci right 1.881243e-03	k: 572	n:330000
Cons ci ratio: 1.348392e-01	ci left: 2.382260e-03	ci right 2.729598e-03	k: 842	n:330000
KS ci ratio: 1.895742e-02	ci left: 1.136177e-01	ci right 1.157952e-01	k: 37852	n:330000
SYNRG   330000 perm   125 sec   (2636 perm/sec)   p_kst 1.147030e-01   p_cons 2.551515e-03   p_joint 1.733333e-03

Joint ci ratio: 1.629116e-01	ci left: 1.561498e-03	ci right 1.841222e-03	k: 577	n:340000
Cons ci ratio: 1.322736e-01	ci left: 2.406011e-03	ci right 2.749613e-03	k: 875	n:340000
KS ci ratio: 1.865955e-02	ci left: 1.138182e-01	ci right 1.159649e-01	k: 39062	n:340000
SYNRG   340000 perm   130 sec   (2608 perm/sec)   p_kst 1.148882e-01   p_cons 2.573529e-03   p_joint 1.697059e-03

Joint ci ratio: 1.639128e-01	ci left: 1.497698e-03	ci right 1.767804e-03	k: 570	n:350000
Cons ci ratio: 1.304257e-01	ci left: 2.406350e-03	ci right 2.744827e-03	k: 900	n:350000
KS ci ratio: 1.839000e-02	ci left: 1.138453e-01	ci right 1.159611e-01	k: 40215	n:350000
SYNRG   350000 perm   136 sec   (2580 perm/sec)   p_kst 1.149000e-01   p_cons 2.571429e-03   p_joint 1.628571e-03

Joint ci ratio: 1.370716e-01	ci left: 2.111269e-03	ci right 2.424607e-03	k: 815	n:360000
Cons ci ratio: 1.278939e-01	ci left: 2.436278e-03	ci right 2.771808e-03	k: 936	n:360000
KS ci ratio: 1.812858e-02	ci left: 1.139070e-01	ci right 1.159936e-01	k: 41381	n:360000
SYNRG   360000 perm   141 sec   (2553 perm/sec)   p_kst 1.149472e-01   p_cons 2.600000e-03   p_joint 2.263889e-03

Joint ci ratio: 1.351797e-01	ci left: 2.114253e-03	ci right 2.423355e-03	k: 838	n:370000
Cons ci ratio: 1.267508e-01	ci left: 2.414913e-03	ci right 2.744305e-03	k: 953	n:370000
KS ci ratio: 1.787326e-02	ci left: 1.140195e-01	ci right 1.160784e-01	k: 42567	n:370000
SYNRG   370000 perm   146 sec   (2527 perm/sec)   p_kst 1.150459e-01   p_cons 2.575676e-03   p_joint 2.264865e-03

Joint ci ratio: 1.335194e-01	ci left: 2.112020e-03	ci right 2.416702e-03	k: 859	n:380000
Cons ci ratio: 1.245494e-01	ci left: 2.438026e-03	ci right 2.764369e-03	k: 987	n:380000
KS ci ratio: 1.764826e-02	ci left: 1.138982e-01	ci right 1.159288e-01	k: 43666	n:380000
SYNRG   380000 perm   152 sec   (2501 perm/sec)   p_kst 1.149105e-01   p_cons 2.597368e-03   p_joint 2.260526e-03

Joint ci ratio: 8.049880e-02	ci left: 5.800224e-03	ci right 6.289210e-03	k: 2356	n:390000
Cons ci ratio: 1.150232e-01	ci left: 2.798398e-03	ci right 3.142386e-03	k: 1157	n:390000
KS ci ratio: 1.742561e-02	ci left: 1.138522e-01	ci right 1.158561e-01	k: 44792	n:390000
SYNRG   390000 perm   157 sec   (2476 perm/sec)   p_kst 1.148513e-01   p_cons 2.966667e-03   p_joint 6.041026e-03

Joint ci ratio: 7.950996e-02	ci left: 5.799767e-03	ci right 6.282430e-03	k: 2415	n:400000
Cons ci ratio: 1.136576e-01	ci left: 2.796436e-03	ci right 3.135828e-03	k: 1185	n:400000
KS ci ratio: 1.721733e-02	ci left: 1.137364e-01	ci right 1.157141e-01	k: 45889	n:400000
SYNRG   400000 perm   163 sec   (2452 perm/sec)   p_kst 1.147225e-01   p_cons 2.962500e-03   p_joint 6.037500e-03

Joint ci ratio: 7.838164e-02	ci left: 5.825674e-03	ci right 6.303299e-03	k: 2485	n:410000
Cons ci ratio: 1.124324e-01	ci left: 2.789851e-03	ci right 3.124552e-03	k: 1211	n:410000
KS ci ratio: 1.700346e-02	ci left: 1.137796e-01	ci right 1.157332e-01	k: 47049	n:410000
SYNRG   410000 perm   169 sec   (2429 perm/sec)   p_kst 1.147537e-01   p_cons 2.953659e-03   p_joint 6.060976e-03

Joint ci ratio: 7.733046e-02	ci left: 5.845722e-03	ci right 6.318274e-03	k: 2553	n:420000
Cons ci ratio: 1.111559e-01	ci left: 2.788228e-03	ci right 3.118688e-03	k: 1239	n:420000
KS ci ratio: 1.680466e-02	ci left: 1.137330e-01	ci right 1.156628e-01	k: 48172	n:420000
SYNRG   420000 perm   175 sec   (2407 perm/sec)   p_kst 1.146952e-01   p_cons 2.950000e-03   p_joint 6.078571e-03

Joint ci ratio: 7.661502e-02	ci left: 5.819251e-03	ci right 6.285117e-03	k: 2601	n:430000
Cons ci ratio: 1.100963e-01	ci left: 2.777655e-03	ci right 3.103519e-03	k: 1263	n:430000
KS ci ratio: 1.661114e-02	ci left: 1.137073e-01	ci right 1.156142e-01	k: 49303	n:430000
SYNRG   430000 perm   180 sec   (2385 perm/sec)   p_kst 1.146581e-01   p_cons 2.937209e-03   p_joint 6.048837e-03

Joint ci ratio: 7.607809e-02	ci left: 5.769475e-03	ci right 6.227976e-03	k: 2638	n:440000
Cons ci ratio: 1.088970e-01	ci left: 2.776419e-03	ci right 3.098363e-03	k: 1291	n:440000
KS ci ratio: 1.641975e-02	ci left: 1.137372e-01	ci right 1.156224e-01	k: 50458	n:440000
SYNRG   440000 perm   186 sec   (2363 perm/sec)   p_kst 1.146773e-01   p_cons 2.934091e-03   p_joint 5.995455e-03

Joint ci ratio: 7.096187e-02	ci left: 6.496462e-03	ci right 6.976589e-03	k: 3030	n:450000
Cons ci ratio: 1.077360e-01	ci left: 2.775258e-03	ci right 3.093418e-03	k: 1319	n:450000
KS ci ratio: 1.624052e-02	ci left: 1.136950e-01	ci right 1.155588e-01	k: 51581	n:450000
SYNRG   450000 perm   192 sec   (2343 perm/sec)   p_kst 1.146244e-01   p_cons 2.931111e-03   p_joint 6.733333e-03

Joint ci ratio: 7.326512e-02	ci left: 5.958116e-03	ci right 6.413355e-03	k: 2844	n:460000
Cons ci ratio: 1.064926e-01	ci left: 2.780512e-03	ci right 3.095366e-03	k: 1350	n:460000
KS ci ratio: 1.606565e-02	ci left: 1.136722e-01	ci right 1.155153e-01	k: 52712	n:460000
SYNRG   460000 perm   198 sec   (2322 perm/sec)   p_kst 1.145913e-01   p_cons 2.934783e-03   p_joint 6.182609e-03

Joint ci ratio: 7.293542e-02	ci left: 5.885647e-03	ci right 6.333240e-03	k: 2870	n:470000
Cons ci ratio: 1.054828e-01	ci left: 2.775205e-03	ci right 3.086292e-03	k: 1376	n:470000
KS ci ratio: 1.589964e-02	ci left: 1.136080e-01	ci right 1.154308e-01	k: 53823	n:470000
SYNRG   470000 perm   204 sec   (2301 perm/sec)   p_kst 1.145170e-01   p_cons 2.927660e-03   p_joint 6.106383e-03

Joint ci ratio: 7.233426e-02	ci left: 5.861210e-03	ci right 6.303117e-03	k: 2918	n:480000
Cons ci ratio: 1.041666e-01	ci left: 2.788394e-03	ci right 3.096821e-03	k: 1411	n:480000
KS ci ratio: 1.573286e-02	ci left: 1.136213e-01	ci right 1.154251e-01	k: 54970	n:480000
SYNRG   480000 perm   210 sec   (2281 perm/sec)   p_kst 1.145208e-01   p_cons 2.939583e-03   p_joint 6.079167e-03

Joint ci ratio: 7.175987e-02	ci left: 5.835781e-03	ci right 6.272131e-03	k: 2965	n:490000
Cons ci ratio: 1.032570e-01	ci left: 2.781184e-03	ci right 3.085965e-03	k: 1436	n:490000
KS ci ratio: 1.556839e-02	ci left: 1.136707e-01	ci right 1.154563e-01	k: 56135	n:490000
SYNRG   490000 perm   217 sec   (2262 perm/sec)   p_kst 1.145612e-01   p_cons 2.930612e-03   p_joint 6.051020e-03

Joint ci ratio: 6.822123e-02	ci left: 6.336135e-03	ci right 6.785611e-03	k: 3279	n:500000
Cons ci ratio: 1.025821e-01	ci left: 2.762581e-03	ci right 3.063225e-03	k: 1455	n:500000
KS ci ratio: 1.540898e-02	ci left: 1.137183e-01	ci right 1.154862e-01	k: 57300	n:500000
SYNRG   500000 perm   223 sec   (2242 perm/sec)   p_kst 1.146000e-01   p_cons 2.910000e-03   p_joint 6.558000e-03

Joint ci ratio: 6.789311e-02	ci left: 6.273568e-03	ci right 6.716381e-03	k: 3311	n:510000
Cons ci ratio: 1.017130e-01	ci left: 2.756180e-03	ci right 3.053434e-03	k: 1480	n:510000
KS ci ratio: 1.525363e-02	ci left: 1.137739e-01	ci right 1.155246e-01	k: 58470	n:510000
SYNRG   510000 perm   230 sec   (2220 perm/sec)   p_kst 1.146471e-01   p_cons 2.901961e-03   p_joint 6.492157e-03

Joint ci ratio: 6.726661e-02	ci left: 6.270138e-03	ci right 6.708465e-03	k: 3373	n:520000
Cons ci ratio: 1.006982e-01	ci left: 2.759408e-03	ci right 3.053866e-03	k: 1510	n:520000
KS ci ratio: 1.510332e-02	ci left: 1.138217e-01	ci right 1.155557e-01	k: 59637	n:520000
SYNRG   520000 perm   236 sec   (2201 perm/sec)   p_kst 1.146865e-01   p_cons 2.903846e-03   p_joint 6.486538e-03

Joint ci ratio: 6.769611e-02	ci left: 6.073904e-03	ci right 6.501331e-03	k: 3331	n:530000
Cons ci ratio: 9.971306e-02	ci left: 2.762529e-03	ci right 3.054267e-03	k: 1540	n:530000
KS ci ratio: 1.496695e-02	ci left: 1.137379e-01	ci right 1.154549e-01	k: 60735	n:530000
SYNRG   530000 perm   243 sec   (2182 perm/sec)   p_kst 1.145943e-01   p_cons 2.905660e-03   p_joint 6.284906e-03

Outputting figure to mutsig2_images.part000000000170/SYNRG.7_4106_530000_0.11459_0.0029057_0.0062849.png
                gene_name: SYNRG
               theta_stop: 0.100 
                    nperm: 530000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.0029 
      ci_cons_bounds_left: 0.0028 
     ci_cons_bounds_right: 0.0031 
                  p_joint: 0.0063 
     ci_joint_bounds_left: 0.0061 
    ci_joint_bounds_right: 0.0065 

Current progress: 13 percent done.
SYTL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.580505e-02	ci left: 3.210824e-01	ci right 3.396165e-01	k: 3303	n:10000
Cons ci ratio: 3.954049e-02	ci left: 4.857530e-01	ci right 5.054495e-01	k: 4956	n:10000
KS ci ratio: 7.424233e-02	ci left: 2.098419e-01	ci right 2.261227e-01	k: 2179	n:10000
SYTL5   10000 perm   2 sec   (4948 perm/sec)   p_kst 2.179000e-01   p_cons 4.956000e-01   p_joint 3.303000e-01

Outputting figure to mutsig2_images.part000000000170/SYTL5.7_2327_10000_0.2179_0.4956_0.3303.png
                gene_name: SYTL5
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 15 percent done.
SYT13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.698355e-02	ci left: 5.191594e-01	ci right 5.388237e-01	k: 5290	n:10000
Cons ci ratio: 3.177040e-02	ci left: 5.938334e-01	ci right 6.131063e-01	k: 6035	n:10000
KS ci ratio: 5.238060e-02	ci left: 3.494907e-01	ci right 3.683915e-01	k: 3589	n:10000
SYT13   10000 perm   2 sec   (5957 perm/sec)   p_kst 3.589000e-01   p_cons 6.035000e-01   p_joint 5.290000e-01

Outputting figure to mutsig2_images.part000000000170/SYT13.6_1305_10000_0.3589_0.6035_0.529.png
                gene_name: SYT13
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 17 percent done.
SYT14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.425176e-02	ci left: 4.298407e-01	ci right 4.493945e-01	k: 4396	n:10000
Cons ci ratio: 7.281323e-02	ci left: 2.164518e-01	ci right 2.329089e-01	k: 2246	n:10000
KS ci ratio: 5.698598e-02	ci left: 3.119521e-01	ci right 3.303522e-01	k: 3211	n:10000
SYT14   10000 perm   2 sec   (5153 perm/sec)   p_kst 3.211000e-01   p_cons 2.246000e-01   p_joint 4.396000e-01

Outputting figure to mutsig2_images.part000000000170/SYT14.6_1900_10000_0.3211_0.2246_0.4396.png
                gene_name: SYT14
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 19 percent done.
T
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.701956e-02	ci left: 2.462819e-01	ci right 2.634612e-01	k: 2548	n:10000
Cons ci ratio: 4.100724e-02	ci left: 4.675680e-01	ci right 4.872452e-01	k: 4774	n:10000
KS ci ratio: 8.528745e-02	ci left: 1.669102e-01	ci right 1.818800e-01	k: 1743	n:10000
T   10000 perm   2 sec   (5643 perm/sec)   p_kst 1.743000e-01   p_cons 4.774000e-01   p_joint 2.548000e-01

Outputting figure to mutsig2_images.part000000000170/T.6_1340_10000_0.1743_0.4774_0.2548.png
                gene_name: T
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 21 percent done.
SYN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.565406e-02	ci left: 3.222736e-01	ci right 3.408246e-01	k: 3315	n:10000
Cons ci ratio: 1.095497e-01	ci left: 1.072486e-01	ci right 1.197776e-01	k: 1134	n:10000
KS ci ratio: 3.793680e-02	ci left: 5.064518e-01	ci right 5.261387e-01	k: 5163	n:10000
SYN3   10000 perm   2 sec   (6080 perm/sec)   p_kst 5.163000e-01   p_cons 1.134000e-01   p_joint 3.315000e-01

Joint ci ratio: 4.567569e-02	ci left: 2.629625e-01	ci right 2.753046e-01	k: 5382	n:20000
Cons ci ratio: 7.930929e-02	ci left: 1.045165e-01	ci right 1.131975e-01	k: 2176	n:20000
KS ci ratio: 2.653607e-02	ci left: 5.147993e-01	ci right 5.286944e-01	k: 10435	n:20000
SYN3   20000 perm   4 sec   (5343 perm/sec)   p_kst 5.217500e-01   p_cons 1.088000e-01   p_joint 2.691000e-01

Outputting figure to mutsig2_images.part000000000170/SYN3.5_1795_20000_0.52175_0.1088_0.2691.png
                gene_name: SYN3
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 23 percent done.
SYNCRIP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.119962e-02	ci left: 1.812696e-01	ci right 1.967120e-01	k: 1889	n:10000
Cons ci ratio: 3.411267e-02	ci left: 5.592250e-01	ci right 5.787348e-01	k: 5690	n:10000
KS ci ratio: 9.219358e-02	ci left: 1.459962e-01	ci right 1.602065e-01	k: 1530	n:10000
SYNCRIP   10000 perm   2 sec   (5636 perm/sec)   p_kst 1.530000e-01   p_cons 5.690000e-01   p_joint 1.889000e-01

Outputting figure to mutsig2_images.part000000000170/SYNCRIP.5_1958_10000_0.153_0.569_0.1889.png
                gene_name: SYNCRIP
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 25 percent done.
SYT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.485100e-02	ci left: 7.043254e-01	ci right 7.221502e-01	k: 7133	n:10000
Cons ci ratio: 4.122148e-02	ci left: 4.649712e-01	ci right 4.846435e-01	k: 4748	n:10000
KS ci ratio: 2.956342e-02	ci left: 6.278885e-01	ci right 6.468314e-01	k: 6374	n:10000
SYT2   10000 perm   2 sec   (5538 perm/sec)   p_kst 6.374000e-01   p_cons 4.748000e-01   p_joint 7.133000e-01

Outputting figure to mutsig2_images.part000000000170/SYT2.5_1292_10000_0.6374_0.4748_0.7133.png
                gene_name: SYT2
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 27 percent done.
SYT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.852375e-02	ci left: 3.005450e-01	ci right 3.187660e-01	k: 3096	n:10000
KS ci ratio: 2.857947e-02	ci left: 6.434762e-01	ci right 6.622347e-01	k: 6529	n:10000
SYT3   10000 perm   2 sec   (6064 perm/sec)   p_kst 6.529000e-01   p_cons 3.096000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000170/SYT3.5_1805_10000_0.6529_0.3096_1.png
                gene_name: SYT3
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 29 percent done.
TAAR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.222657e-02	ci left: 4.529894e-01	ci right 4.726323e-01	k: 4628	n:10000
Cons ci ratio: 7.660662e-02	ci left: 1.994895e-01	ci right 2.154812e-01	k: 2074	n:10000
KS ci ratio: 2.834030e-02	ci left: 6.472993e-01	ci right 6.660094e-01	k: 6567	n:10000
TAAR1   10000 perm   2 sec   (5761 perm/sec)   p_kst 6.567000e-01   p_cons 2.074000e-01   p_joint 4.628000e-01

Outputting figure to mutsig2_images.part000000000170/TAAR1.5_1024_10000_0.6567_0.2074_0.4628.png
                gene_name: TAAR1
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 31 percent done.
TAAR5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.575879e-02	ci left: 6.892979e-01	ci right 7.073865e-01	k: 6984	n:10000
Cons ci ratio: 1.842942e-02	ci left: 8.113112e-01	ci right 8.265025e-01	k: 8190	n:10000
KS ci ratio: 3.760404e-02	ci left: 5.108537e-01	ci right 5.305342e-01	k: 5207	n:10000
TAAR5   10000 perm   2 sec   (6388 perm/sec)   p_kst 5.207000e-01   p_cons 8.190000e-01   p_joint 6.984000e-01

Outputting figure to mutsig2_images.part000000000170/TAAR5.5_1018_10000_0.5207_0.819_0.6984.png
                gene_name: TAAR5
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 33 percent done.
TAAR6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.606649e-02	ci left: 4.102013e-01	ci right 4.296454e-01	k: 4199	n:10000
Cons ci ratio: 2.589946e-02	ci left: 6.869792e-01	ci right 7.051065e-01	k: 6961	n:10000
KS ci ratio: 6.533341e-02	ci left: 2.559738e-01	ci right 2.733635e-01	k: 2646	n:10000
TAAR6   10000 perm   2 sec   (6056 perm/sec)   p_kst 2.646000e-01   p_cons 6.961000e-01   p_joint 4.199000e-01

Outputting figure to mutsig2_images.part000000000170/TAAR6.5_1040_10000_0.2646_0.6961_0.4199.png
                gene_name: TAAR6
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 35 percent done.
TAB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.025640e-02	ci left: 2.289892e-01	ci right 2.457640e-01	k: 2373	n:10000
Cons ci ratio: 2.777680e-02	ci left: 6.563567e-01	ci right 6.749467e-01	k: 6657	n:10000
KS ci ratio: 1.126523e-01	ci left: 1.018840e-01	ci right 1.141454e-01	k: 1079	n:10000
TAB3   10000 perm   2 sec   (5564 perm/sec)   p_kst 1.079000e-01   p_cons 6.657000e-01   p_joint 2.373000e-01

Joint ci ratio: 4.750917e-02	ci left: 2.478791e-01	ci right 2.599925e-01	k: 5078	n:20000
Cons ci ratio: 1.985410e-02	ci left: 6.542911e-01	ci right 6.674621e-01	k: 13218	n:20000
KS ci ratio: 7.941166e-02	ci left: 1.042709e-01	ci right 1.129432e-01	k: 2171	n:20000
TAB3   20000 perm   4 sec   (4957 perm/sec)   p_kst 1.085500e-01   p_cons 6.609000e-01   p_joint 2.539000e-01

Outputting figure to mutsig2_images.part000000000170/TAB3.5_2167_20000_0.10855_0.6609_0.2539.png
                gene_name: TAB3
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 37 percent done.
TAF1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.552480e-02	ci left: 5.391843e-01	ci right 5.587872e-01	k: 5490	n:10000
Cons ci ratio: 6.709020e-02	ci left: 2.458864e-01	ci right 2.630569e-01	k: 2544	n:10000
KS ci ratio: 4.142033e-02	ci left: 4.625744e-01	ci right 4.822417e-01	k: 4724	n:10000
TAF1A   10000 perm   2 sec   (5849 perm/sec)   p_kst 4.724000e-01   p_cons 2.544000e-01   p_joint 5.490000e-01

Outputting figure to mutsig2_images.part000000000170/TAF1A.5_1393_10000_0.4724_0.2544_0.549.png
                gene_name: TAF1A
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 38 percent done.
SYNGAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.912852e-01	ci left: 3.643453e-02	ci right 4.423614e-02	k: 402	n:10000
Cons ci ratio: 5.474812e-01	ci left: 3.713306e-03	ci right 6.586626e-03	k: 50	n:10000
KS ci ratio: 4.111420e-02	ci left: 4.662695e-01	ci right 4.859444e-01	k: 4761	n:10000
SYNGAP1   10000 perm   2 sec   (5100 perm/sec)   p_kst 4.761000e-01   p_cons 5.000000e-03   p_joint 4.020000e-02

Joint ci ratio: 1.079979e-01	ci left: 5.845301e-02	ci right 6.517508e-02	k: 1235	n:20000
Cons ci ratio: 3.677103e-01	ci left: 4.613191e-03	ci right 6.734416e-03	k: 112	n:20000
KS ci ratio: 2.890599e-02	ci left: 4.720551e-01	ci right 4.859510e-01	k: 9580	n:20000
SYNGAP1   20000 perm   4 sec   (4587 perm/sec)   p_kst 4.790000e-01   p_cons 5.600000e-03   p_joint 6.175000e-02

Joint ci ratio: 9.457150e-02	ci left: 5.159938e-02	ci right 5.675405e-02	k: 1624	n:30000
Cons ci ratio: 3.071465e-01	ci left: 4.571451e-03	ci right 6.259842e-03	k: 161	n:30000
KS ci ratio: 2.349535e-02	ci left: 4.755981e-01	ci right 4.869389e-01	k: 14438	n:30000
SYNGAP1   30000 perm   7 sec   (4403 perm/sec)   p_kst 4.812667e-01   p_cons 5.366667e-03   p_joint 5.413333e-02

Joint ci ratio: 8.541099e-02	ci left: 4.788441e-02	ci right 5.218122e-02	k: 2000	n:40000
Cons ci ratio: 2.456646e-01	ci left: 5.548131e-03	ci right 7.124827e-03	k: 252	n:40000
KS ci ratio: 2.032102e-02	ci left: 4.770173e-01	ci right 4.868354e-01	k: 19277	n:40000
SYNGAP1   40000 perm   9 sec   (4263 perm/sec)   p_kst 4.819250e-01   p_cons 6.300000e-03   p_joint 5.000000e-02

Joint ci ratio: 7.245721e-02	ci left: 5.329278e-02	ci right 5.731904e-02	k: 2764	n:50000
Cons ci ratio: 2.223087e-01	ci left: 5.492974e-03	ci right 6.885294e-03	k: 308	n:50000
KS ci ratio: 1.814037e-02	ci left: 4.785111e-01	ci right 4.872909e-01	k: 24145	n:50000
SYNGAP1   50000 perm   12 sec   (4168 perm/sec)   p_kst 4.829000e-01   p_cons 6.160000e-03   p_joint 5.528000e-02

Joint ci ratio: 8.283210e-02	ci left: 3.449087e-02	ci right 3.748756e-02	k: 2158	n:60000
Cons ci ratio: 2.202846e-01	ci left: 4.671711e-03	ci right 5.843595e-03	k: 314	n:60000
KS ci ratio: 1.652347e-02	ci left: 4.799938e-01	ci right 4.880077e-01	k: 29040	n:60000
SYNGAP1   60000 perm   15 sec   (4084 perm/sec)   p_kst 4.840000e-01   p_cons 5.233333e-03   p_joint 3.596667e-02

Joint ci ratio: 7.084882e-02	ci left: 4.041356e-02	ci right 4.339599e-02	k: 2932	n:70000
Cons ci ratio: 2.018836e-01	ci left: 4.816266e-03	ci right 5.911065e-03	k: 374	n:70000
KS ci ratio: 1.530307e-02	ci left: 4.801201e-01	ci right 4.875384e-01	k: 33868	n:70000
SYNGAP1   70000 perm   17 sec   (4002 perm/sec)   p_kst 4.838286e-01   p_cons 5.342857e-03   p_joint 4.188571e-02

Joint ci ratio: 6.691104e-02	ci left: 3.975935e-02	ci right 4.252405e-02	k: 3290	n:80000
Cons ci ratio: 1.885293e-01	ci left: 4.868176e-03	ci right 5.893197e-03	k: 429	n:80000
KS ci ratio: 1.429373e-02	ci left: 4.810938e-01	ci right 4.880324e-01	k: 38765	n:80000
SYNGAP1   80000 perm   20 sec   (3936 perm/sec)   p_kst 4.845625e-01   p_cons 5.362500e-03   p_joint 4.112500e-02

Joint ci ratio: 5.847656e-02	ci left: 4.616322e-02	ci right 4.895492e-02	k: 4279	n:90000
Cons ci ratio: 1.757047e-01	ci left: 5.016632e-03	ci right 5.993434e-03	k: 494	n:90000
KS ci ratio: 1.345611e-02	ci left: 4.820409e-01	ci right 4.885823e-01	k: 43678	n:90000
SYNGAP1   90000 perm   23 sec   (3868 perm/sec)   p_kst 4.853111e-01   p_cons 5.488889e-03   p_joint 4.754444e-02

Joint ci ratio: 5.474576e-02	ci left: 4.743328e-02	ci right 5.011297e-02	k: 4876	n:100000
Cons ci ratio: 1.688630e-01	ci left: 4.907269e-03	ci right 5.821781e-03	k: 535	n:100000
KS ci ratio: 1.276078e-02	ci left: 4.823978e-01	ci right 4.886031e-01	k: 48550	n:100000
SYNGAP1   100000 perm   26 sec   (3805 perm/sec)   p_kst 4.855000e-01   p_cons 5.350000e-03   p_joint 4.876000e-02

Joint ci ratio: 5.591290e-02	ci left: 4.157552e-02	ci right 4.397593e-02	k: 4704	n:110000
Cons ci ratio: 1.610870e-01	ci left: 4.923090e-03	ci right 5.794212e-03	k: 588	n:110000
KS ci ratio: 1.218401e-02	ci left: 4.818425e-01	ci right 4.877583e-01	k: 53328	n:110000
SYNGAP1   110000 perm   29 sec   (3751 perm/sec)   p_kst 4.848000e-01   p_cons 5.345455e-03   p_joint 4.276364e-02

Joint ci ratio: 5.837532e-02	ci left: 3.515844e-02	ci right 3.728072e-02	k: 4345	n:120000
Cons ci ratio: 1.525139e-01	ci left: 5.057303e-03	ci right 5.900200e-03	k: 656	n:120000
KS ci ratio: 1.167135e-02	ci left: 4.817103e-01	ci right 4.873738e-01	k: 58145	n:120000
SYNGAP1   120000 perm   33 sec   (3691 perm/sec)   p_kst 4.845417e-01   p_cons 5.466667e-03   p_joint 3.620833e-02

Joint ci ratio: 5.688074e-02	ci left: 3.424270e-02	ci right 3.625502e-02	k: 4581	n:130000
Cons ci ratio: 1.455825e-01	ci left: 5.142250e-03	ci right 5.956967e-03	k: 720	n:130000
KS ci ratio: 1.120820e-02	ci left: 4.820567e-01	ci right 4.874978e-01	k: 63021	n:130000
SYNGAP1   130000 perm   36 sec   (3635 perm/sec)   p_kst 4.847769e-01   p_cons 5.538462e-03   p_joint 3.523846e-02

Joint ci ratio: 5.135813e-02	ci left: 3.892305e-02	ci right 4.098178e-02	k: 5592	n:140000
Cons ci ratio: 1.402379e-01	ci left: 5.160650e-03	ci right 5.945757e-03	k: 776	n:140000
KS ci ratio: 1.079367e-02	ci left: 4.824717e-01	ci right 4.877147e-01	k: 67913	n:140000
SYNGAP1   140000 perm   39 sec   (3581 perm/sec)   p_kst 4.850929e-01   p_cons 5.542857e-03   p_joint 3.994286e-02

Joint ci ratio: 4.833895e-02	ci left: 4.098384e-02	ci right 4.302058e-02	k: 6299	n:150000
Cons ci ratio: 1.364336e-01	ci left: 5.099777e-03	ci right 5.852866e-03	k: 820	n:150000
KS ci ratio: 1.041905e-02	ci left: 4.829744e-01	ci right 4.880395e-01	k: 72826	n:150000
SYNGAP1   150000 perm   43 sec   (3529 perm/sec)   p_kst 4.855067e-01   p_cons 5.466667e-03   p_joint 4.199333e-02

Joint ci ratio: 4.803723e-02	ci left: 3.899561e-02	ci right 4.092110e-02	k: 6392	n:160000
Cons ci ratio: 1.328456e-01	ci left: 5.052810e-03	ci right 5.777790e-03	k: 865	n:160000
KS ci ratio: 1.008090e-02	ci left: 4.834169e-01	ci right 4.883211e-01	k: 77739	n:160000
SYNGAP1   160000 perm   46 sec   (3478 perm/sec)   p_kst 4.858688e-01   p_cons 5.406250e-03   p_joint 3.995000e-02

Joint ci ratio: 4.886357e-02	ci left: 3.558446e-02	ci right 3.737257e-02	k: 6200	n:170000
Cons ci ratio: 1.286772e-01	ci left: 5.079917e-03	ci right 5.784170e-03	k: 922	n:170000
KS ci ratio: 9.775736e-03	ci left: 4.837038e-01	ci right 4.884614e-01	k: 82634	n:170000
SYNGAP1   170000 perm   50 sec   (3429 perm/sec)   p_kst 4.860824e-01   p_cons 5.423529e-03   p_joint 3.647059e-02

Joint ci ratio: 4.865549e-02	ci left: 3.395806e-02	ci right 3.565697e-02	k: 6264	n:180000
Cons ci ratio: 1.249422e-01	ci left: 5.098945e-03	ci right 5.783798e-03	k: 978	n:180000
KS ci ratio: 9.504309e-03	ci left: 4.835608e-01	ci right 4.881841e-01	k: 87457	n:180000
SYNGAP1   180000 perm   53 sec   (3380 perm/sec)   p_kst 4.858722e-01   p_cons 5.433333e-03   p_joint 3.480000e-02

Joint ci ratio: 4.901398e-02	ci left: 3.176959e-02	ci right 3.337103e-02	k: 6187	n:190000
Cons ci ratio: 1.218703e-01	ci left: 5.085612e-03	ci right 5.750668e-03	k: 1028	n:190000
KS ci ratio: 9.254204e-03	ci left: 4.834398e-01	ci right 4.879396e-01	k: 92281	n:190000
SYNGAP1   190000 perm   57 sec   (3334 perm/sec)   p_kst 4.856895e-01   p_cons 5.410526e-03   p_joint 3.256316e-02

Joint ci ratio: 5.034152e-02	ci left: 2.868375e-02	ci right 3.016993e-02	k: 5884	n:200000
Cons ci ratio: 1.191811e-01	ci left: 5.059242e-03	ci right 5.705221e-03	k: 1075	n:200000
KS ci ratio: 9.021863e-03	ci left: 4.833873e-01	ci right 4.877731e-01	k: 97116	n:200000
SYNGAP1   200000 perm   61 sec   (3291 perm/sec)   p_kst 4.855800e-01   p_cons 5.375000e-03   p_joint 2.942000e-02

Joint ci ratio: 4.793165e-02	ci left: 3.012633e-02	ci right 3.161047e-02	k: 6481	n:210000
Cons ci ratio: 1.161436e-01	ci left: 5.081770e-03	ci right 5.712953e-03	k: 1132	n:210000
KS ci ratio: 8.802409e-03	ci left: 4.835554e-01	ci right 4.878354e-01	k: 101996	n:210000
SYNGAP1   210000 perm   65 sec   (3249 perm/sec)   p_kst 4.856952e-01   p_cons 5.390476e-03   p_joint 3.086190e-02

Joint ci ratio: 4.467436e-02	ci left: 3.305773e-02	ci right 3.457277e-02	k: 7438	n:220000
Cons ci ratio: 1.134710e-01	ci left: 5.089187e-03	ci right 5.705773e-03	k: 1186	n:220000
KS ci ratio: 8.601670e-03	ci left: 4.835095e-01	ci right 4.876909e-01	k: 106832	n:220000
SYNGAP1   220000 perm   69 sec   (3208 perm/sec)   p_kst 4.856000e-01   p_cons 5.390909e-03   p_joint 3.380909e-02

Joint ci ratio: 4.660688e-02	ci left: 2.914324e-02	ci right 3.053820e-02	k: 6862	n:230000
Cons ci ratio: 1.106169e-01	ci left: 5.129935e-03	ci right 5.734805e-03	k: 1248	n:230000
KS ci ratio: 8.420293e-03	ci left: 4.830990e-01	ci right 4.871883e-01	k: 111583	n:230000
SYNGAP1   230000 perm   73 sec   (3166 perm/sec)   p_kst 4.851435e-01   p_cons 5.426087e-03   p_joint 2.983478e-02

Joint ci ratio: 4.721713e-02	ci left: 2.725711e-02	ci right 2.857933e-02	k: 6699	n:240000
Cons ci ratio: 1.078438e-01	ci left: 5.179629e-03	ci right 5.774076e-03	k: 1313	n:240000
KS ci ratio: 8.246475e-03	ci left: 4.829320e-01	ci right 4.869351e-01	k: 116384	n:240000
SYNGAP1   240000 perm   77 sec   (3126 perm/sec)   p_kst 4.849333e-01   p_cons 5.470833e-03   p_joint 2.791250e-02

Joint ci ratio: 3.253256e-02	ci left: 5.399439e-02	ci right 5.578395e-02	k: 13721	n:250000
Cons ci ratio: 9.868382e-02	ci left: 5.962366e-03	ci right 6.585164e-03	k: 1567	n:250000
KS ci ratio: 8.087070e-03	ci left: 4.825272e-01	ci right 4.864492e-01	k: 121122	n:250000
SYNGAP1   250000 perm   81 sec   (3088 perm/sec)   p_kst 4.844880e-01   p_cons 6.268000e-03   p_joint 5.488400e-02

Outputting figure to mutsig2_images.part000000000170/SYNGAP1.4_4108_250000_0.48449_0.006268_0.054884.png
                gene_name: SYNGAP1
               theta_stop: 0.099 
                    nperm: 250000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.0063 
      ci_cons_bounds_left: 0.0060 
     ci_cons_bounds_right: 0.0066 
                  p_joint: 0.055 
     ci_joint_bounds_left: 0.054 
    ci_joint_bounds_right: 0.056 

Current progress: 40 percent done.
SYNJ1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.686446e-02	ci left: 6.711587e-01	ci right 6.895361e-01	k: 6804	n:10000
Cons ci ratio: 4.898462e-02	ci left: 3.807221e-01	ci right 3.999419e-01	k: 3903	n:10000
KS ci ratio: 4.957627e-02	ci left: 3.750495e-01	ci right 3.942177e-01	k: 3846	n:10000
SYNJ1   10000 perm   2 sec   (4629 perm/sec)   p_kst 3.846000e-01   p_cons 3.903000e-01   p_joint 6.804000e-01

Outputting figure to mutsig2_images.part000000000170/SYNJ1.4_5001_10000_0.3846_0.3903_0.6804.png
                gene_name: SYNJ1
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 42 percent done.
SYT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.365642e-02	ci left: 3.385600e-01	ci right 3.573286e-01	k: 3479	n:10000
Cons ci ratio: 8.591465e-02	ci left: 1.648463e-01	ci right 1.797451e-01	k: 1722	n:10000
KS ci ratio: 5.515566e-02	ci left: 3.262447e-01	ci right 3.448511e-01	k: 3355	n:10000
SYT1   10000 perm   2 sec   (5773 perm/sec)   p_kst 3.355000e-01   p_cons 1.722000e-01   p_joint 3.479000e-01

Outputting figure to mutsig2_images.part000000000170/SYT1.4_1301_10000_0.3355_0.1722_0.3479.png
                gene_name: SYT1
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 44 percent done.
SYT10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.855665e-02	ci left: 4.983503e-01	ci right 5.180449e-01	k: 5082	n:10000
Cons ci ratio: 5.071561e-02	ci left: 3.644048e-01	ci right 3.834687e-01	k: 3739	n:10000
KS ci ratio: 4.498665e-02	ci left: 4.217637e-01	ci right 4.412762e-01	k: 4315	n:10000
SYT10   10000 perm   2 sec   (6176 perm/sec)   p_kst 4.315000e-01   p_cons 3.739000e-01   p_joint 5.082000e-01

Outputting figure to mutsig2_images.part000000000170/SYT10.4_1600_10000_0.4315_0.3739_0.5082.png
                gene_name: SYT10
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 46 percent done.
SYT4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.467933e-02	ci left: 5.511066e-01	ci right 5.706579e-01	k: 5609	n:10000
Cons ci ratio: 2.939100e-02	ci left: 6.306030e-01	ci right 6.495153e-01	k: 6401	n:10000
KS ci ratio: 4.410837e-02	ci left: 4.314365e-01	ci right 4.509978e-01	k: 4412	n:10000
SYT4   10000 perm   2 sec   (6328 perm/sec)   p_kst 4.412000e-01   p_cons 6.401000e-01   p_joint 5.609000e-01

Outputting figure to mutsig2_images.part000000000170/SYT4.4_1294_10000_0.4412_0.6401_0.5609.png
                gene_name: SYT4
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 48 percent done.
SYT6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.135385e-02	ci left: 6.001585e-01	ci right 6.193775e-01	k: 6098	n:10000
Cons ci ratio: 1.162697e-02	ci left: 9.136856e-01	ci right 9.244688e-01	k: 9192	n:10000
KS ci ratio: 4.182125e-02	ci left: 4.577814e-01	ci right 4.774375e-01	k: 4676	n:10000
SYT6   10000 perm   2 sec   (5780 perm/sec)   p_kst 4.676000e-01   p_cons 9.192000e-01   p_joint 6.098000e-01

Outputting figure to mutsig2_images.part000000000170/SYT6.4_1302_10000_0.4676_0.9192_0.6098.png
                gene_name: SYT6
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 50 percent done.
TAAR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.213698e-02	ci left: 7.496835e-01	ci right 7.665659e-01	k: 7582	n:10000
Cons ci ratio: 3.048442e-02	ci left: 6.135171e-01	ci right 6.326112e-01	k: 6231	n:10000
KS ci ratio: 3.270783e-02	ci left: 5.797835e-01	ci right 5.991643e-01	k: 5895	n:10000
TAAR2   10000 perm   2 sec   (5876 perm/sec)   p_kst 5.895000e-01   p_cons 6.231000e-01   p_joint 7.582000e-01

Outputting figure to mutsig2_images.part000000000170/TAAR2.4_1064_10000_0.5895_0.6231_0.7582.png
                gene_name: TAAR2
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 52 percent done.
TACR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.002234e-02	ci left: 7.850257e-01	ci right 8.010033e-01	k: 7931	n:10000
Cons ci ratio: 2.214301e-02	ci left: 7.495823e-01	ci right 7.664671e-01	k: 7581	n:10000
KS ci ratio: 3.075105e-02	ci left: 6.093982e-01	ci right 6.285324e-01	k: 6190	n:10000
TACR3   10000 perm   2 sec   (5899 perm/sec)   p_kst 6.190000e-01   p_cons 7.581000e-01   p_joint 7.931000e-01

Outputting figure to mutsig2_images.part000000000170/TACR3.4_1418_10000_0.619_0.7581_0.7931.png
                gene_name: TACR3
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 54 percent done.
TAF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.294744e-02	ci left: 1.439367e-01	ci right 1.580673e-01	k: 1509	n:10000
Cons ci ratio: 2.379086e-02	ci left: 7.219903e-01	ci right 7.394751e-01	k: 7308	n:10000
KS ci ratio: 1.341162e-01	ci left: 7.339876e-02	ci right 8.404819e-02	k: 786	n:10000
TAF3   10000 perm   2 sec   (5389 perm/sec)   p_kst 7.860000e-02   p_cons 7.308000e-01   p_joint 1.509000e-01

Joint ci ratio: 7.525703e-02	ci left: 1.149366e-01	ci right 1.239743e-01	k: 2388	n:20000
Cons ci ratio: 1.701970e-02	ci left: 7.199626e-01	ci right 7.323716e-01	k: 14524	n:20000
KS ci ratio: 9.630520e-02	ci left: 7.280418e-02	ci right 8.021950e-02	k: 1529	n:20000
TAF3   20000 perm   4 sec   (4835 perm/sec)   p_kst 7.645000e-02   p_cons 7.262000e-01   p_joint 1.194000e-01

Outputting figure to mutsig2_images.part000000000170/TAF3.4_2817_20000_0.07645_0.7262_0.1194.png
                gene_name: TAF3
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.076 
        ci_ks_bounds_left: 0.073 
       ci_ks_bounds_right: 0.080 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 56 percent done.
TAF4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.257205e-01	ci left: 8.300372e-02	ci right 9.423727e-02	k: 885	n:10000
Cons ci ratio: 1.342088e-01	ci left: 7.330186e-02	ci right 8.394515e-02	k: 785	n:10000
KS ci ratio: 1.158652e-01	ci left: 9.671912e-02	ci right 1.087134e-01	k: 1026	n:10000
TAF4B   10000 perm   2 sec   (5426 perm/sec)   p_kst 1.026000e-01   p_cons 7.850000e-02   p_joint 8.850000e-02

Joint ci ratio: 1.248127e-01	ci left: 4.405941e-02	ci right 4.997318e-02	k: 939	n:20000
Cons ci ratio: 9.797943e-02	ci left: 7.045809e-02	ci right 7.776631e-02	k: 1481	n:20000
KS ci ratio: 8.359604e-02	ci left: 9.489433e-02	ci right 1.032226e-01	k: 1980	n:20000
TAF4B   20000 perm   4 sec   (4864 perm/sec)   p_kst 9.900000e-02   p_cons 7.405000e-02   p_joint 4.695000e-02

Joint ci ratio: 9.553883e-02	ci left: 5.058932e-02	ci right 5.569766e-02	k: 1593	n:30000
Cons ci ratio: 7.772037e-02	ci left: 7.512066e-02	ci right 8.122800e-02	k: 2344	n:30000
KS ci ratio: 6.846751e-02	ci left: 9.511750e-02	ci right 1.018938e-01	k: 2954	n:30000
TAF4B   30000 perm   6 sec   (4651 perm/sec)   p_kst 9.846667e-02   p_cons 7.813333e-02   p_joint 5.310000e-02

Outputting figure to mutsig2_images.part000000000170/TAF4B.4_2649_30000_0.098467_0.078133_0.0531.png
                gene_name: TAF4B
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.098 
        ci_ks_bounds_left: 0.095 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.078 
      ci_cons_bounds_left: 0.075 
     ci_cons_bounds_right: 0.081 
                  p_joint: 0.053 
     ci_joint_bounds_left: 0.051 
    ci_joint_bounds_right: 0.056 

Current progress: 58 percent done.
SYNJ2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.380780e-02	ci left: 2.651762e-01	ci right 2.827556e-01	k: 2739	n:10000
Cons ci ratio: 5.714316e-02	ci left: 3.107615e-01	ci right 3.291435e-01	k: 3199	n:10000
KS ci ratio: 8.119962e-02	ci left: 1.812696e-01	ci right 1.967120e-01	k: 1889	n:10000
SYNJ2   10000 perm   2 sec   (5061 perm/sec)   p_kst 1.889000e-01   p_cons 3.199000e-01   p_joint 2.739000e-01

Outputting figure to mutsig2_images.part000000000170/SYNJ2.3_4599_10000_0.1889_0.3199_0.2739.png
                gene_name: SYNJ2
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 60 percent done.
SYNPO2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.304674e-02	ci left: 2.699278e-01	ci right 2.876013e-01	k: 2787	n:10000
Cons ci ratio: 7.924085e-02	ci left: 1.887513e-01	ci right 2.044258e-01	k: 1965	n:10000
KS ci ratio: 6.833256e-02	ci left: 2.390661e-01	ci right 2.560812e-01	k: 2475	n:10000
SYNPO2   10000 perm   2 sec   (5274 perm/sec)   p_kst 2.475000e-01   p_cons 1.965000e-01   p_joint 2.787000e-01

Outputting figure to mutsig2_images.part000000000170/SYNPO2.3_3918_10000_0.2475_0.1965_0.2787.png
                gene_name: SYNPO2
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 62 percent done.
SYT11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.148904e-02	ci left: 1.479580e-01	ci right 1.622435e-01	k: 1550	n:10000
Cons ci ratio: 5.688161e-02	ci left: 3.127459e-01	ci right 3.311579e-01	k: 3219	n:10000
KS ci ratio: 1.256428e-01	ci left: 8.310086e-02	ci right 9.434008e-02	k: 886	n:10000
SYT11   10000 perm   2 sec   (6065 perm/sec)   p_kst 8.860000e-02   p_cons 3.219000e-01   p_joint 1.550000e-01

Joint ci ratio: 9.189018e-02	ci left: 7.955498e-02	ci right 8.726664e-02	k: 1667	n:20000
Cons ci ratio: 4.060684e-02	ci left: 3.113488e-01	ci right 3.243042e-01	k: 6356	n:20000
KS ci ratio: 9.013292e-02	ci left: 8.249260e-02	ci right 9.032813e-02	k: 1727	n:20000
SYT11   20000 perm   4 sec   (5387 perm/sec)   p_kst 8.635000e-02   p_cons 3.178000e-01   p_joint 8.335000e-02

Outputting figure to mutsig2_images.part000000000170/SYT11.3_1312_20000_0.08635_0.3178_0.08335.png
                gene_name: SYT11
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.086 
        ci_ks_bounds_left: 0.082 
       ci_ks_bounds_right: 0.090 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.083 
     ci_joint_bounds_left: 0.080 
    ci_joint_bounds_right: 0.087 

Current progress: 63 percent done.
SYT16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.957627e-02	ci left: 3.750495e-01	ci right 3.942177e-01	k: 3846	n:10000
Cons ci ratio: 4.167877e-02	ci left: 4.594788e-01	ci right 4.791391e-01	k: 4693	n:10000
KS ci ratio: 8.415012e-02	ci left: 1.707441e-01	ci right 1.858438e-01	k: 1782	n:10000
SYT16   10000 perm   2 sec   (6401 perm/sec)   p_kst 1.782000e-01   p_cons 4.693000e-01   p_joint 3.846000e-01

Outputting figure to mutsig2_images.part000000000170/SYT16.3_1962_10000_0.1782_0.4693_0.3846.png
                gene_name: SYT16
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.39 

Current progress: 65 percent done.
SYT5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.571168e-02	ci left: 5.365801e-01	ci right 5.561928e-01	k: 5464	n:10000
Cons ci ratio: 3.845652e-02	ci left: 4.996504e-01	ci right 5.193441e-01	k: 5095	n:10000
KS ci ratio: 5.808866e-02	ci left: 3.037185e-01	ci right 3.219906e-01	k: 3128	n:10000
SYT5   10000 perm   2 sec   (6436 perm/sec)   p_kst 3.128000e-01   p_cons 5.095000e-01   p_joint 5.464000e-01

Outputting figure to mutsig2_images.part000000000170/SYT5.3_1193_10000_0.3128_0.5095_0.5464.png
                gene_name: SYT5
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 67 percent done.
SYT7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.819809e-03	ci left: 9.826368e-01	ci right 9.874746e-01	k: 9852	n:10000
Cons ci ratio: 1.393192e-02	ci left: 8.815532e-01	ci right 8.940199e-01	k: 8879	n:10000
KS ci ratio: 1.548872e-02	ci left: 8.581460e-01	ci right 8.716407e-01	k: 8650	n:10000
SYT7   10000 perm   2 sec   (6225 perm/sec)   p_kst 8.650000e-01   p_cons 8.879000e-01   p_joint 9.852000e-01

Outputting figure to mutsig2_images.part000000000170/SYT7.3_1248_10000_0.865_0.8879_0.9852.png
                gene_name: SYT7
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 69 percent done.
SYT9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.090273e-02	ci left: 2.257305e-01	ci right 2.424247e-01	k: 2340	n:10000
Cons ci ratio: 5.752610e-02	ci left: 3.078845e-01	ci right 3.262222e-01	k: 3170	n:10000
KS ci ratio: 6.647702e-02	ci left: 2.493471e-01	ci right 2.665941e-01	k: 2579	n:10000
SYT9   10000 perm   2 sec   (6304 perm/sec)   p_kst 2.579000e-01   p_cons 3.170000e-01   p_joint 2.340000e-01

Outputting figure to mutsig2_images.part000000000170/SYT9.3_1504_10000_0.2579_0.317_0.234.png
                gene_name: SYT9
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 71 percent done.
SYTL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.548520e-02	ci left: 4.163805e-01	ci right 4.358625e-01	k: 4261	n:10000
Cons ci ratio: 3.646732e-02	ci left: 5.261663e-01	ci right 5.458127e-01	k: 5360	n:10000
KS ci ratio: 9.255073e-02	ci left: 1.450154e-01	ci right 1.591879e-01	k: 1520	n:10000
SYTL4   10000 perm   2 sec   (5854 perm/sec)   p_kst 1.520000e-01   p_cons 5.360000e-01   p_joint 4.261000e-01

Outputting figure to mutsig2_images.part000000000170/SYTL4.3_2080_10000_0.152_0.536_0.4261.png
                gene_name: SYTL4
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 73 percent done.
TAAR8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.711799e-02	ci left: 6.670292e-01	ci right 6.854680e-01	k: 6763	n:10000
Cons ci ratio: 6.048275e-02	ci left: 2.867661e-01	ci right 3.047530e-01	k: 2957	n:10000
KS ci ratio: 1.910962e-02	ci left: 8.001410e-01	ci right 8.156792e-01	k: 8080	n:10000
TAAR8   10000 perm   2 sec   (6420 perm/sec)   p_kst 8.080000e-01   p_cons 2.957000e-01   p_joint 6.763000e-01

Outputting figure to mutsig2_images.part000000000170/TAAR8.3_1031_10000_0.808_0.2957_0.6763.png
                gene_name: TAAR8
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 75 percent done.
TAAR9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.511523e-02	ci left: 4.203680e-01	ci right 4.398728e-01	k: 4301	n:10000
Cons ci ratio: 7.586907e-02	ci left: 2.026437e-01	ci right 2.187252e-01	k: 2106	n:10000
KS ci ratio: 5.660918e-02	ci left: 3.148297e-01	ci right 3.332729e-01	k: 3240	n:10000
TAAR9   10000 perm   2 sec   (6325 perm/sec)   p_kst 3.240000e-01   p_cons 2.106000e-01   p_joint 4.301000e-01

Outputting figure to mutsig2_images.part000000000170/TAAR9.3_1049_10000_0.324_0.2106_0.4301.png
                gene_name: TAAR9
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 77 percent done.
TACR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.642761e-02	ci left: 4.064147e-01	ci right 4.258341e-01	k: 4161	n:10000
Cons ci ratio: 9.884244e-02	ci left: 1.291424e-01	ci right 1.426705e-01	k: 1358	n:10000
KS ci ratio: 1.052715e-02	ci left: 9.277156e-01	ci right 9.376305e-01	k: 9328	n:10000
TACR1   10000 perm   2 sec   (6118 perm/sec)   p_kst 9.328000e-01   p_cons 1.358000e-01   p_joint 4.161000e-01

Outputting figure to mutsig2_images.part000000000170/TACR1.3_1248_10000_0.9328_0.1358_0.4161.png
                gene_name: TACR1
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 79 percent done.
TADA2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.716943e-02	ci left: 3.105631e-01	ci right 3.289420e-01	k: 3197	n:10000
Cons ci ratio: 1.690602e-02	ci left: 8.359236e-01	ci right 8.502760e-01	k: 8432	n:10000
KS ci ratio: 9.809198e-02	ci left: 1.309046e-01	ci right 1.445072e-01	k: 1376	n:10000
TADA2B   10000 perm   2 sec   (6398 perm/sec)   p_kst 1.376000e-01   p_cons 8.432000e-01   p_joint 3.197000e-01

Outputting figure to mutsig2_images.part000000000170/TADA2B.3_1271_10000_0.1376_0.8432_0.3197.png
                gene_name: TADA2B
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 81 percent done.
TAF1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.757927e-02	ci left: 3.074877e-01	ci right 3.258192e-01	k: 3166	n:10000
Cons ci ratio: 9.615707e-02	ci left: 1.356056e-01	ci right 1.494034e-01	k: 1424	n:10000
KS ci ratio: 4.906704e-02	ci left: 3.799258e-01	ci right 3.991386e-01	k: 3895	n:10000
TAF1B   10000 perm   2 sec   (6448 perm/sec)   p_kst 3.895000e-01   p_cons 1.424000e-01   p_joint 3.166000e-01

Outputting figure to mutsig2_images.part000000000170/TAF1B.3_1827_10000_0.3895_0.1424_0.3166.png
                gene_name: TAF1B
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 83 percent done.
TAF1C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.971484e-02	ci left: 4.835542e-01	ci right 5.032497e-01	k: 4934	n:10000
KS ci ratio: 8.857514e-03	ci left: 9.471062e-01	ci right 9.556284e-01	k: 9515	n:10000
TAF1C   10000 perm   2 sec   (6011 perm/sec)   p_kst 9.515000e-01   p_cons 4.934000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000170/TAF1C.3_2662_10000_0.9515_0.4934_1.png
                gene_name: TAF1C
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 85 percent done.
TAF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.769032e-01	ci left: 4.264711e-02	ci right 5.101943e-02	k: 467	n:10000
Cons ci ratio: 5.003467e-01	ci left: 4.581663e-03	ci right 7.716529e-03	k: 60	n:10000
KS ci ratio: 7.168258e-02	ci left: 2.218801e-01	ci right 2.384774e-01	k: 2301	n:10000
TAF4   10000 perm   2 sec   (5255 perm/sec)   p_kst 2.301000e-01   p_cons 6.000000e-03   p_joint 4.670000e-02

Joint ci ratio: 2.089046e-01	ci left: 1.549097e-02	ci right 1.915129e-02	k: 345	n:20000
Cons ci ratio: 3.815379e-01	ci left: 4.250695e-03	ci right 6.297200e-03	k: 104	n:20000
KS ci ratio: 5.123734e-02	ci left: 2.205655e-01	ci right 2.322141e-01	k: 4527	n:20000
TAF4   20000 perm   4 sec   (4718 perm/sec)   p_kst 2.263500e-01   p_cons 5.200000e-03   p_joint 1.725000e-02

Joint ci ratio: 1.294329e-01	ci left: 2.774345e-02	ci right 3.161501e-02	k: 889	n:30000
Cons ci ratio: 3.034031e-01	ci left: 4.694616e-03	ci right 6.403287e-03	k: 165	n:30000
KS ci ratio: 4.149188e-02	ci left: 2.245196e-01	ci right 2.340662e-01	k: 6878	n:30000
TAF4   30000 perm   7 sec   (4537 perm/sec)   p_kst 2.292667e-01   p_cons 5.500000e-03   p_joint 2.963333e-02

Joint ci ratio: 1.476112e-01	ci left: 1.604487e-02	ci right 1.862589e-02	k: 692	n:40000
Cons ci ratio: 2.560555e-01	ci left: 5.079395e-03	ci right 6.593699e-03	k: 232	n:40000
KS ci ratio: 3.619946e-02	ci left: 2.225795e-01	ci right 2.308103e-01	k: 9067	n:40000
TAF4   40000 perm   9 sec   (4410 perm/sec)   p_kst 2.266750e-01   p_cons 5.800000e-03   p_joint 1.730000e-02

Joint ci ratio: 1.115081e-01	ci left: 2.277345e-02	ci right 2.548219e-02	k: 1205	n:50000
Cons ci ratio: 2.344492e-01	ci left: 4.908246e-03	ci right 6.230155e-03	k: 277	n:50000
KS ci ratio: 3.248345e-02	ci left: 2.218827e-01	ci right 2.292292e-01	k: 11277	n:50000
TAF4   50000 perm   12 sec   (4307 perm/sec)   p_kst 2.255400e-01   p_cons 5.540000e-03   p_joint 2.410000e-02

Joint ci ratio: 1.145821e-01	ci left: 1.803595e-02	ci right 2.024424e-02	k: 1147	n:60000
Cons ci ratio: 2.151929e-01	ci left: 4.908141e-03	ci right 6.107120e-03	k: 329	n:60000
KS ci ratio: 2.957084e-02	ci left: 2.231724e-01	ci right 2.298874e-01	k: 13591	n:60000
TAF4   60000 perm   14 sec   (4217 perm/sec)   p_kst 2.265167e-01   p_cons 5.483333e-03   p_joint 1.911667e-02

Joint ci ratio: 8.395987e-02	ci left: 2.893059e-02	ci right 3.147998e-02	k: 2113	n:70000
Cons ci ratio: 1.994908e-01	ci left: 4.938407e-03	ci right 6.046048e-03	k: 383	n:70000
KS ci ratio: 2.726764e-02	ci left: 2.248251e-01	ci right 2.310546e-01	k: 15955	n:70000
TAF4   70000 perm   17 sec   (4135 perm/sec)   p_kst 2.279286e-01   p_cons 5.471429e-03   p_joint 3.018571e-02

Joint ci ratio: 7.935386e-02	ci left: 2.842415e-02	ci right 3.078513e-02	k: 2367	n:80000
Cons ci ratio: 1.861503e-01	ci left: 4.999258e-03	ci right 6.037097e-03	k: 440	n:80000
KS ci ratio: 2.552053e-02	ci left: 2.248351e-01	ci right 2.306596e-01	k: 18219	n:80000
TAF4   80000 perm   20 sec   (4058 perm/sec)   p_kst 2.277375e-01   p_cons 5.500000e-03   p_joint 2.958750e-02

Joint ci ratio: 8.322760e-02	ci left: 2.305345e-02	ci right 2.506628e-02	k: 2164	n:90000
Cons ci ratio: 1.777011e-01	ci left: 4.899790e-03	ci right 5.865845e-03	k: 483	n:90000
KS ci ratio: 2.403405e-02	ci left: 2.253950e-01	ci right 2.308892e-01	k: 20532	n:90000
TAF4   90000 perm   23 sec   (3990 perm/sec)   p_kst 2.281333e-01   p_cons 5.366667e-03   p_joint 2.404444e-02

Joint ci ratio: 8.803856e-02	ci left: 1.858345e-02	ci right 2.030458e-02	k: 1943	n:100000
Cons ci ratio: 1.666882e-01	ci left: 5.041419e-03	ci right 5.967618e-03	k: 549	n:100000
KS ci ratio: 2.277771e-02	ci left: 2.258906e-01	ci right 2.311051e-01	k: 22849	n:100000
TAF4   100000 perm   25 sec   (3923 perm/sec)   p_kst 2.284900e-01   p_cons 5.490000e-03   p_joint 1.943000e-02

Joint ci ratio: 8.563978e-02	ci left: 1.788984e-02	ci right 1.949931e-02	k: 2055	n:110000
Cons ci ratio: 1.598637e-01	ci left: 5.001638e-03	ci right 5.879293e-03	k: 597	n:110000
KS ci ratio: 2.173002e-02	ci left: 2.258131e-01	ci right 2.307830e-01	k: 25112	n:110000
TAF4   110000 perm   29 sec   (3856 perm/sec)   p_kst 2.282909e-01   p_cons 5.427273e-03   p_joint 1.868182e-02

Joint ci ratio: 6.606824e-02	ci left: 2.755758e-02	ci right 2.944863e-02	k: 3419	n:120000
Cons ci ratio: 1.535752e-01	ci left: 4.985161e-03	ci right 5.822348e-03	k: 647	n:120000
KS ci ratio: 2.098464e-02	ci left: 2.229138e-01	ci right 2.276495e-01	k: 27033	n:120000
TAF4   120000 perm   32 sec   (3791 perm/sec)   p_kst 2.252750e-01   p_cons 5.391667e-03   p_joint 2.849167e-02

Joint ci ratio: 6.858098e-02	ci left: 2.367396e-02	ci right 2.536272e-02	k: 3186	n:130000
Cons ci ratio: 1.476561e-01	ci left: 4.994020e-03	ci right 5.797516e-03	k: 700	n:130000
KS ci ratio: 2.016177e-02	ci left: 2.230006e-01	ci right 2.275501e-01	k: 29285	n:130000
TAF4   130000 perm   35 sec   (3732 perm/sec)   p_kst 2.252692e-01   p_cons 5.384615e-03   p_joint 2.450769e-02

Joint ci ratio: 6.922261e-02	ci left: 2.161713e-02	ci right 2.317416e-02	k: 3134	n:140000
Cons ci ratio: 1.431380e-01	ci left: 4.947032e-03	ci right 5.716532e-03	k: 745	n:140000
KS ci ratio: 1.941874e-02	ci left: 2.232561e-01	ci right 2.276410e-01	k: 31562	n:140000
TAF4   140000 perm   38 sec   (3680 perm/sec)   p_kst 2.254429e-01   p_cons 5.321429e-03   p_joint 2.238571e-02

Joint ci ratio: 8.211112e-02	ci left: 1.435173e-02	ci right 1.558712e-02	k: 2244	n:150000
Cons ci ratio: 1.390107e-01	ci left: 4.906634e-03	ci right 5.646021e-03	k: 790	n:150000
KS ci ratio: 1.876476e-02	ci left: 2.232476e-01	ci right 2.274830e-01	k: 33804	n:150000
TAF4   150000 perm   41 sec   (3627 perm/sec)   p_kst 2.253600e-01   p_cons 5.266667e-03   p_joint 1.496000e-02

Joint ci ratio: 7.944765e-02	ci left: 1.439170e-02	ci right 1.558847e-02	k: 2397	n:160000
Cons ci ratio: 1.340176e-01	ci left: 4.962174e-03	ci right 5.680931e-03	k: 850	n:160000
KS ci ratio: 1.820138e-02	ci left: 2.226941e-01	ci right 2.267909e-01	k: 35958	n:160000
TAF4   160000 perm   45 sec   (3570 perm/sec)   p_kst 2.247375e-01   p_cons 5.312500e-03   p_joint 1.498125e-02

Joint ci ratio: 8.218450e-02	ci left: 1.266284e-02	ci right 1.375385e-02	k: 2244	n:170000
Cons ci ratio: 1.303928e-01	ci left: 4.943293e-03	ci right 5.638448e-03	k: 898	n:170000
KS ci ratio: 1.764169e-02	ci left: 2.230754e-01	ci right 2.270517e-01	k: 38260	n:170000
TAF4   170000 perm   48 sec   (3517 perm/sec)   p_kst 2.250588e-01   p_cons 5.282353e-03   p_joint 1.320000e-02

Joint ci ratio: 8.105306e-02	ci left: 1.230756e-02	ci right 1.335267e-02	k: 2308	n:180000
Cons ci ratio: 1.273855e-01	ci left: 4.899845e-03	ci right 5.571797e-03	k: 941	n:180000
KS ci ratio: 1.714700e-02	ci left: 2.230836e-01	ci right 2.269474e-01	k: 40502	n:180000
TAF4   180000 perm   52 sec   (3467 perm/sec)   p_kst 2.250111e-01   p_cons 5.227778e-03   p_joint 1.282222e-02

Joint ci ratio: 7.922579e-02	ci left: 1.221680e-02	ci right 1.322973e-02	k: 2416	n:190000
Cons ci ratio: 1.238836e-01	ci left: 4.917240e-03	ci right 5.571679e-03	k: 995	n:190000
KS ci ratio: 1.667989e-02	ci left: 2.233391e-01	ci right 2.271009e-01	k: 42791	n:190000
TAF4   190000 perm   56 sec   (3417 perm/sec)   p_kst 2.252158e-01   p_cons 5.236842e-03   p_joint 1.271579e-02

Joint ci ratio: 7.716157e-02	ci left: 1.224816e-02	ci right 1.323604e-02	k: 2547	n:200000
Cons ci ratio: 1.201961e-01	ci left: 4.971923e-03	ci right 5.612544e-03	k: 1057	n:200000
KS ci ratio: 1.625480e-02	ci left: 2.234456e-01	ci right 2.271124e-01	k: 45055	n:200000
TAF4   200000 perm   59 sec   (3370 perm/sec)   p_kst 2.252750e-01   p_cons 5.285000e-03   p_joint 1.273500e-02

Joint ci ratio: 7.252935e-02	ci left: 1.322120e-02	ci right 1.422086e-02	k: 2880	n:210000
Cons ci ratio: 1.165060e-01	ci left: 5.049401e-03	ci right 5.678656e-03	k: 1125	n:210000
KS ci ratio: 1.586107e-02	ci left: 2.235336e-01	ci right 2.271121e-01	k: 47317	n:210000
TAF4   210000 perm   63 sec   (3326 perm/sec)   p_kst 2.253190e-01   p_cons 5.357143e-03   p_joint 1.371429e-02

Joint ci ratio: 6.770374e-02	ci left: 1.450067e-02	ci right 1.552126e-02	k: 3301	n:220000
Cons ci ratio: 1.140521e-01	ci left: 5.036186e-03	ci right 5.649685e-03	k: 1174	n:220000
KS ci ratio: 1.549645e-02	ci left: 2.235737e-01	ci right 2.270699e-01	k: 49570	n:220000
TAF4   220000 perm   67 sec   (3283 perm/sec)   p_kst 2.253182e-01   p_cons 5.336364e-03   p_joint 1.500455e-02

Joint ci ratio: 6.569671e-02	ci left: 1.474243e-02	ci right 1.574810e-02	k: 3505	n:230000
Cons ci ratio: 1.118389e-01	ci left: 5.015793e-03	ci right 5.614169e-03	k: 1221	n:230000
KS ci ratio: 1.517099e-02	ci left: 2.232644e-01	ci right 2.266817e-01	k: 51743	n:230000
TAF4   230000 perm   71 sec   (3241 perm/sec)   p_kst 2.249696e-01   p_cons 5.308696e-03   p_joint 1.523913e-02

Joint ci ratio: 6.442475e-02	ci left: 1.470199e-02	ci right 1.568477e-02	k: 3645	n:240000
Cons ci ratio: 1.129718e-01	ci left: 4.709571e-03	ci right 5.277485e-03	k: 1197	n:240000
KS ci ratio: 1.485152e-02	ci left: 2.233015e-01	ci right 2.266468e-01	k: 53993	n:240000
TAF4   240000 perm   75 sec   (3200 perm/sec)   p_kst 2.249708e-01   p_cons 4.987500e-03   p_joint 1.518750e-02

Joint ci ratio: 6.415065e-02	ci left: 1.424368e-02	ci right 1.519162e-02	k: 3678	n:250000
Cons ci ratio: 1.107749e-01	ci left: 4.707816e-03	ci right 5.263756e-03	k: 1245	n:250000
KS ci ratio: 1.455659e-02	ci left: 2.232127e-01	ci right 2.264897e-01	k: 56212	n:250000
TAF4   250000 perm   79 sec   (3161 perm/sec)   p_kst 2.248480e-01   p_cons 4.980000e-03   p_joint 1.471200e-02

Joint ci ratio: 6.120729e-02	ci left: 1.505517e-02	ci right 1.600952e-02	k: 4037	n:260000
Cons ci ratio: 1.087013e-01	ci left: 4.706294e-03	ci right 5.250985e-03	k: 1293	n:260000
KS ci ratio: 1.427762e-02	ci left: 2.231544e-01	ci right 2.263672e-01	k: 58437	n:260000
TAF4   260000 perm   83 sec   (3119 perm/sec)   p_kst 2.247577e-01   p_cons 4.973077e-03   p_joint 1.552692e-02

Joint ci ratio: 6.298209e-02	ci left: 1.369875e-02	ci right 1.459320e-02	k: 3818	n:270000
Cons ci ratio: 1.069002e-01	ci left: 4.690553e-03	ci right 5.223862e-03	k: 1337	n:270000
KS ci ratio: 1.400932e-02	ci left: 2.232191e-01	ci right 2.263720e-01	k: 60694	n:270000
TAF4   270000 perm   88 sec   (3078 perm/sec)   p_kst 2.247926e-01   p_cons 4.951852e-03   p_joint 1.414074e-02

Joint ci ratio: 5.678929e-02	ci left: 1.625675e-02	ci right 1.721044e-02	k: 4684	n:280000
Cons ci ratio: 1.048432e-01	ci left: 4.707309e-03	ci right 5.231589e-03	k: 1390	n:280000
KS ci ratio: 1.375195e-02	ci left: 2.233724e-01	ci right 2.264690e-01	k: 62977	n:280000
TAF4   280000 perm   92 sec   (3040 perm/sec)   p_kst 2.249179e-01   p_cons 4.964286e-03   p_joint 1.672857e-02

Joint ci ratio: 5.943982e-02	ci left: 1.433646e-02	ci right 1.521810e-02	k: 4284	n:290000
Cons ci ratio: 1.024382e-01	ci left: 4.766683e-03	ci right 5.284664e-03	k: 1456	n:290000
KS ci ratio: 1.351253e-02	ci left: 2.234055e-01	ci right 2.264482e-01	k: 65228	n:290000
TAF4   290000 perm   97 sec   (3003 perm/sec)   p_kst 2.249241e-01   p_cons 5.020690e-03   p_joint 1.477241e-02

Joint ci ratio: 6.121021e-02	ci left: 1.307367e-02	ci right 1.390244e-02	k: 4045	n:300000
Cons ci ratio: 9.700936e-02	ci left: 5.150633e-03	ci right 5.678990e-03	k: 1623	n:300000
KS ci ratio: 1.329320e-02	ci left: 2.232274e-01	ci right 2.262179e-01	k: 67416	n:300000
TAF4   300000 perm   101 sec   (2969 perm/sec)   p_kst 2.247200e-01   p_cons 5.410000e-03   p_joint 1.348333e-02

Outputting figure to mutsig2_images.part000000000170/TAF4.3_3318_300000_0.22472_0.00541_0.013483.png
                gene_name: TAF4
               theta_stop: 0.097 
                    nperm: 300000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.0054 
      ci_cons_bounds_left: 0.0052 
     ci_cons_bounds_right: 0.0057 
                  p_joint: 0.013 
     ci_joint_bounds_left: 0.013 
    ci_joint_bounds_right: 0.014 

Current progress: 87 percent done.
SYN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.777008e-02	ci left: 5.086527e-01	ci right 5.283365e-01	k: 5185	n:10000
Cons ci ratio: 4.388548e-02	ci left: 4.339301e-01	ci right 4.535027e-01	k: 4437	n:10000
KS ci ratio: 3.097309e-02	ci left: 6.059831e-01	ci right 6.251495e-01	k: 6156	n:10000
SYN2   10000 perm   2 sec   (6366 perm/sec)   p_kst 6.156000e-01   p_cons 4.437000e-01   p_joint 5.185000e-01

Outputting figure to mutsig2_images.part000000000170/SYN2.2_1870_10000_0.6156_0.4437_0.5185.png
                gene_name: SYN2
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 88 percent done.
SYTL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.771862e-02	ci left: 1.948582e-01	ci right 2.107153e-01	k: 2027	n:10000
Cons ci ratio: 8.889150e-02	ci left: 1.555149e-01	ci right 1.700821e-01	k: 1627	n:10000
KS ci ratio: 1.351440e-01	ci left: 7.233299e-02	ci right 8.291462e-02	k: 775	n:10000
SYTL3   10000 perm   2 sec   (6562 perm/sec)   p_kst 7.750000e-02   p_cons 1.627000e-01   p_joint 2.027000e-01

Joint ci ratio: 1.378673e-01	ci left: 3.616580e-02	ci right 4.156932e-02	k: 776	n:20000
Cons ci ratio: 6.194998e-02	ci left: 1.616077e-01	ci right 1.719893e-01	k: 3335	n:20000
KS ci ratio: 9.928795e-02	ci left: 6.869925e-02	ci right 7.592569e-02	k: 1445	n:20000
SYTL3   20000 perm   3 sec   (5796 perm/sec)   p_kst 7.225000e-02   p_cons 1.667500e-01   p_joint 3.880000e-02

Joint ci ratio: 7.885687e-02	ci left: 7.309127e-02	ci right 7.912446e-02	k: 2282	n:30000
Cons ci ratio: 5.060648e-02	ci left: 1.624323e-01	ci right 1.708991e-01	k: 4999	n:30000
KS ci ratio: 8.118995e-02	ci left: 6.916528e-02	ci right 7.505124e-02	k: 2162	n:30000
SYTL3   30000 perm   5 sec   (5475 perm/sec)   p_kst 7.206667e-02   p_cons 1.666333e-01   p_joint 7.606667e-02

Outputting figure to mutsig2_images.part000000000170/SYTL3.2_1681_30000_0.072067_0.16663_0.076067.png
                gene_name: SYTL3
               theta_stop: 0.081 
                    nperm: 30000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.075 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.076 
     ci_joint_bounds_left: 0.073 
    ci_joint_bounds_right: 0.079 

Current progress: 90 percent done.
TAB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.116695e-01	ci left: 1.035416e-01	ci right 1.158868e-01	k: 1096	n:10000
Cons ci ratio: 2.318040e-01	ci left: 2.457161e-02	ci right 3.110733e-02	k: 277	n:10000
KS ci ratio: 9.764019e-02	ci left: 1.319816e-01	ci right 1.456295e-01	k: 1387	n:10000
TAB1   10000 perm   2 sec   (6454 perm/sec)   p_kst 1.387000e-01   p_cons 2.770000e-02   p_joint 1.096000e-01

Joint ci ratio: 4.031372e-02	ci left: 3.144814e-01	ci right 3.274707e-01	k: 6419	n:20000
Cons ci ratio: 1.609604e-01	ci left: 2.647782e-02	ci right 3.116050e-02	k: 575	n:20000
KS ci ratio: 6.936269e-02	ci left: 1.329030e-01	ci right 1.425026e-01	k: 2753	n:20000
TAB1   20000 perm   4 sec   (5697 perm/sec)   p_kst 1.376500e-01   p_cons 2.875000e-02   p_joint 3.209500e-01

Joint ci ratio: 4.092863e-02	ci left: 2.293508e-01	ci right 2.389674e-01	k: 7024	n:30000
Cons ci ratio: 1.301125e-01	ci left: 2.745293e-02	ci right 3.130560e-02	k: 880	n:30000
KS ci ratio: 5.590702e-02	ci left: 1.368495e-01	ci right 1.447536e-01	k: 4223	n:30000
TAB1   30000 perm   6 sec   (5418 perm/sec)   p_kst 1.407667e-01   p_cons 2.933333e-02   p_joint 2.341333e-01

Joint ci ratio: 3.146885e-02	ci left: 2.750810e-01	ci right 2.839010e-01	k: 11179	n:40000
Cons ci ratio: 1.103633e-01	ci left: 2.888515e-02	ci right 3.228345e-02	k: 1222	n:40000
KS ci ratio: 4.819318e-02	ci left: 1.384940e-01	ci right 1.453581e-01	k: 5676	n:40000
TAB1   40000 perm   8 sec   (5237 perm/sec)   p_kst 1.419000e-01   p_cons 3.055000e-02   p_joint 2.794750e-01

Joint ci ratio: 1.276393e-02	ci left: 6.493503e-01	ci right 6.577118e-01	k: 32677	n:50000
Cons ci ratio: 9.890424e-02	ci left: 2.895149e-02	ci right 3.198335e-02	k: 1522	n:50000
KS ci ratio: 4.288464e-02	ci left: 1.401009e-01	ci right 1.462606e-01	k: 7158	n:50000
TAB1   50000 perm   10 sec   (5092 perm/sec)   p_kst 1.431600e-01   p_cons 3.044000e-02   p_joint 6.535400e-01

Outputting figure to mutsig2_images.part000000000170/TAB1.2_1645_50000_0.14316_0.03044_0.65354.png
                gene_name: TAB1
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.030 
      ci_cons_bounds_left: 0.029 
     ci_cons_bounds_right: 0.032 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.66 

Current progress: 92 percent done.
TAC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.717692e-02	ci left: 5.165574e-01	ci right 5.362273e-01	k: 5264	n:10000
Cons ci ratio: 1.553508e-02	ci left: 8.574316e-01	ci right 8.709555e-01	k: 8643	n:10000
KS ci ratio: 6.210389e-02	ci left: 2.759680e-01	ci right 2.937575e-01	k: 2848	n:10000
TAC1   10000 perm   1 sec   (7122 perm/sec)   p_kst 2.848000e-01   p_cons 8.643000e-01   p_joint 5.264000e-01

Outputting figure to mutsig2_images.part000000000170/TAC1.2_414_10000_0.2848_0.8643_0.5264.png
                gene_name: TAC1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 94 percent done.
TACC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.823653e-02	ci left: 8.144611e-01	ci right 8.295509e-01	k: 8221	n:10000
Cons ci ratio: 3.527447e-02	ci left: 5.426902e-01	ci right 5.622792e-01	k: 5525	n:10000
KS ci ratio: 2.313256e-02	ci left: 7.330016e-01	ci right 7.502574e-01	k: 7417	n:10000
TACC2   10000 perm   2 sec   (4085 perm/sec)   p_kst 7.417000e-01   p_cons 5.525000e-01   p_joint 8.221000e-01

Outputting figure to mutsig2_images.part000000000170/TACC2.2_9007_10000_0.7417_0.5525_0.8221.png
                gene_name: TACC2
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 96 percent done.
TADA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.383922e-02	ci left: 7.211824e-01	ci right 7.386835e-01	k: 7300	n:10000
KS ci ratio: 2.420220e-02	ci left: 7.151243e-01	ci right 7.327451e-01	k: 7240	n:10000
TADA1   10000 perm   1 sec   (6839 perm/sec)   p_kst 7.240000e-01   p_cons 7.300000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000170/TADA1.2_1040_10000_0.724_0.73_1.png
                gene_name: TADA1
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
TAF5L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.678422e-02	ci left: 6.724682e-01	ci right 6.908258e-01	k: 6817	n:10000
Cons ci ratio: 1.200103e-01	ci left: 9.058624e-02	ci right 1.022501e-01	k: 963	n:10000
KS ci ratio: 3.745367e-02	ci left: 5.128549e-01	ci right 5.325319e-01	k: 5227	n:10000
TAF5L   10000 perm   2 sec   (6334 perm/sec)   p_kst 5.227000e-01   p_cons 9.630000e-02   p_joint 6.817000e-01

Joint ci ratio: 9.573051e-02	ci left: 7.363535e-02	ci right 8.108808e-02	k: 1546	n:20000
Cons ci ratio: 8.495935e-02	ci left: 9.209831e-02	ci right 1.003195e-01	k: 1923	n:20000
KS ci ratio: 2.664527e-02	ci left: 5.127484e-01	ci right 5.266459e-01	k: 10394	n:20000
TAF5L   20000 perm   4 sec   (5502 perm/sec)   p_kst 5.197000e-01   p_cons 9.615000e-02   p_joint 7.730000e-02

Outputting figure to mutsig2_images.part000000000170/TAF5L.2_1792_20000_0.5197_0.09615_0.0773.png
                gene_name: TAF5L
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.096 
      ci_cons_bounds_left: 0.092 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.077 
     ci_joint_bounds_left: 0.074 
    ci_joint_bounds_right: 0.081 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000170
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 170 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1641>
Subject: Job 8004604: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1641>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000171> was used as the working directory.
Started at Sun Nov 11 15:21:14 2012
Results reported at Sun Nov 11 16:00:55 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000171.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000171.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 171  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000171.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   2467.26 sec.
    Max Memory :      4670 MB
    Max Swap   :      7073 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
171
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 171
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 171: processing genes 15381 - 15470
Calculating significance of each gene.
Using projection method.
15381	TAF6L	7.367497e-01
15382	TAF7	1
15383	TAF7L	7.646270e-01
15384	TAF8	5.163727e-01
15385	TAF9	5.201489e-01
15386	TAF9B	1
15387	TAGAP	8.932184e-01
15388	TAGLN	1
15389	TAGLN2	3.214816e-01
15390	TAGLN3	1
15391	TAL1	9.042267e-03
15392	TAL2	1.500350e-01
15393	TALDO1	6.125167e-01
15394	TANC1	9.996986e-01
15395	TANC2	9.239448e-01
15396	TANK	8.143252e-02
15397	TAOK1	7.586544e-01
15398	TAOK2	9.281842e-01
15399	TAOK3	4.494608e-01
15400	TAP1	4.044961e-01
15401	TAP2	9.490624e-01
15402	TAPBP	9.171771e-02
15403	TAPBPL	1
15404	TAPT1	1
15405	TARBP1	4.052841e-01
15406	TARBP2	3.561954e-01
15407	TARDBP	1
15408	TARP	1
15409	TARS	4.935417e-01
15410	TARS2	9.241528e-01
15411	TARSL2	4.305072e-01
15412	TAS1R1	1
15413	TAS1R2	1
15414	TAS1R3	8.860345e-01
15415	TAS2R1	1
15416	TAS2R10	1.119660e-01
15417	TAS2R13	1
15418	TAS2R14	1
15419	TAS2R16	1
15420	TAS2R19	1.390090e-01
15421	TAS2R20	5.834005e-01
15422	TAS2R3	2.916824e-01
15423	TAS2R30	1
15424	TAS2R31	1
15425	TAS2R38	3.428338e-01
15426	TAS2R39	6.518947e-01
15427	TAS2R4	6.013568e-01
15428	TAS2R40	6.831762e-02
15429	TAS2R41	5.679700e-03
15430	TAS2R42	3.300506e-01
15431	TAS2R43	1
15432	TAS2R46	1
15433	TAS2R5	4.372438e-01
15434	TAS2R50	1
15435	TAS2R60	3.160276e-04
15436	TAS2R7	5.261682e-01
15437	TAS2R8	5.483013e-01
15438	TAS2R9	1.540440e-01
15439	TASP1	2.640603e-02
15440	TAT	6.830999e-01
15441	TATDN1	1.414851e-01
15442	TATDN2	6.553695e-01
15443	TATDN3	3.047579e-01
15444	TAX1BP1	8.341140e-01
15445	TAX1BP3	1
15446	TAZ	7.233025e-01
15447	TBC1D1	9.651639e-01
15448	TBC1D10A	9.272445e-01
15449	TBC1D10B	6.449692e-01
15450	TBC1D10C	4.390474e-01
15451	TBC1D12	7.818589e-01
15452	TBC1D13	8.527160e-01
15453	TBC1D14	2.584416e-01
15454	TBC1D15	4.002175e-01
15455	TBC1D16	4.537168e-01
15456	TBC1D17	1
15457	TBC1D19	2.613978e-01
15458	TBC1D2	1
15459	TBC1D20	6.114336e-01
15460	TBC1D21	1.831601e-01
15461	TBC1D22A	3.857588e-01
15462	TBC1D22B	8.785720e-01
15463	TBC1D23	1
15464	TBC1D24	3.446573e-01
15465	TBC1D25	2.683094e-01
15466	TBC1D26	4.894703e-01
15467	TBC1D28	5.647737e-01
15468	TBC1D29	4.401734e-01
15469	TBC1D2B	7.518677e-01
15470	TBC1D3B	5.729079e-01
Done

Running MutSig 2:
Scatter job 171: processing genes 15381 - 15470
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
TARBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.561562e-02	ci left: 4.149851e-01	ci right 4.344588e-01	k: 4247	n:10000
Cons ci ratio: 2.426275e-02	ci left: 7.141148e-01	ci right 7.317552e-01	k: 7230	n:10000
KS ci ratio: 6.202778e-02	ci left: 2.764632e-01	ci right 2.942620e-01	k: 2853	n:10000
TARBP1   10000 perm   2 sec   (4728 perm/sec)   p_kst 2.853000e-01   p_cons 7.230000e-01   p_joint 4.247000e-01

Outputting figure to mutsig2_images.part000000000171/TARBP1.8_4986_10000_0.2853_0.723_0.4247.png
                gene_name: TARBP1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 2 percent done.
TAS2R60
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.325114e-02	ci left: 8.913891e-01	ci right 9.033783e-01	k: 8975	n:10000
KS ci ratio: 2.208266e-02	ci left: 7.505939e-01	ci right 7.674550e-01	k: 7591	n:10000
TAS2R60   10000 perm   2 sec   (6103 perm/sec)   p_kst 7.591000e-01   p_cons 8.975000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000171/TAS2R60.8_960_10000_0.7591_0.8975_1.png
                gene_name: TAS2R60
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 4 percent done.
TAOK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.808088e-02	ci left: 3.895819e-01	ci right 4.088768e-01	k: 3992	n:10000
Cons ci ratio: 1.734486e-02	ci left: 8.289004e-01	ci right 8.435032e-01	k: 8363	n:10000
KS ci ratio: 5.853744e-02	ci left: 3.004459e-01	ci right 3.186652e-01	k: 3095	n:10000
TAOK1   10000 perm   2 sec   (5214 perm/sec)   p_kst 3.095000e-01   p_cons 8.363000e-01   p_joint 3.992000e-01

Outputting figure to mutsig2_images.part000000000171/TAOK1.7_3082_10000_0.3095_0.8363_0.3992.png
                gene_name: TAOK1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 6 percent done.
TANC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.214801e-01	ci left: 8.854359e-02	ci right 1.000940e-01	k: 942	n:10000
Cons ci ratio: 2.121886e-01	ci left: 2.949052e-02	ci right 3.658492e-02	k: 329	n:10000
KS ci ratio: 1.210554e-01	ci left: 8.912712e-02	ci right 1.007101e-01	k: 948	n:10000
TANC1   10000 perm   2 sec   (4529 perm/sec)   p_kst 9.480000e-02   p_cons 3.290000e-02   p_joint 9.420000e-02

Joint ci ratio: 8.763043e-02	ci left: 8.695066e-02	ci right 9.496872e-02	k: 1818	n:20000
Cons ci ratio: 1.474078e-01	ci left: 3.162770e-02	ci right 3.670891e-02	k: 682	n:20000
KS ci ratio: 8.628047e-02	ci left: 8.949949e-02	ci right 9.761912e-02	k: 1870	n:20000
TANC1   20000 perm   5 sec   (4115 perm/sec)   p_kst 9.350000e-02   p_cons 3.410000e-02   p_joint 9.090000e-02

Joint ci ratio: 8.481686e-02	ci left: 6.364067e-02	ci right 6.931030e-02	k: 1993	n:30000
Cons ci ratio: 1.199052e-01	ci left: 3.233379e-02	ci right 3.649034e-02	k: 1031	n:30000
KS ci ratio: 7.088790e-02	ci left: 8.921156e-02	ci right 9.580094e-02	k: 2774	n:30000
TANC1   30000 perm   8 sec   (3950 perm/sec)   p_kst 9.246667e-02   p_cons 3.436667e-02   p_joint 6.643333e-02

Joint ci ratio: 7.328664e-02	ci left: 6.429852e-02	ci right 6.921460e-02	k: 2669	n:40000
Cons ci ratio: 1.039980e-01	ci left: 3.251345e-02	ci right 3.610457e-02	k: 1371	n:40000
KS ci ratio: 6.083986e-02	ci left: 9.115717e-02	ci right 9.690192e-02	k: 3760	n:40000
TANC1   40000 perm   10 sec   (3817 perm/sec)   p_kst 9.400000e-02   p_cons 3.427500e-02   p_joint 6.672500e-02

Joint ci ratio: 6.697468e-02	ci left: 6.196848e-02	ci right 6.628230e-02	k: 3205	n:50000
Cons ci ratio: 9.243444e-02	ci left: 3.311286e-02	ci right 3.634145e-02	k: 1735	n:50000
KS ci ratio: 5.446970e-02	ci left: 9.129764e-02	ci right 9.642963e-02	k: 4692	n:50000
TANC1   50000 perm   13 sec   (3734 perm/sec)   p_kst 9.384000e-02   p_cons 3.470000e-02   p_joint 6.410000e-02

Outputting figure to mutsig2_images.part000000000171/TANC1.5_5691_50000_0.09384_0.0347_0.0641.png
                gene_name: TANC1
               theta_stop: 0.092 
                    nperm: 50000 
                     p_ks: 0.094 
        ci_ks_bounds_left: 0.091 
       ci_ks_bounds_right: 0.096 
                   p_cons: 0.035 
      ci_cons_bounds_left: 0.033 
     ci_cons_bounds_right: 0.036 
                  p_joint: 0.064 
     ci_joint_bounds_left: 0.062 
    ci_joint_bounds_right: 0.066 

Current progress: 9 percent done.
TANC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.896504e-02	ci left: 6.373404e-01	ci right 6.561741e-01	k: 6468	n:10000
Cons ci ratio: 3.897529e-02	ci left: 4.929507e-01	ci right 5.126477e-01	k: 5028	n:10000
KS ci ratio: 6.926208e-02	ci left: 2.341256e-01	ci right 2.510246e-01	k: 2425	n:10000
TANC2   10000 perm   2 sec   (4579 perm/sec)   p_kst 2.425000e-01   p_cons 5.028000e-01   p_joint 6.468000e-01

Outputting figure to mutsig2_images.part000000000171/TANC2.5_6073_10000_0.2425_0.5028_0.6468.png
                gene_name: TANC2
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 11 percent done.
TAOK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.009799e-02	ci left: 4.787572e-01	ci right 4.984494e-01	k: 4886	n:10000
Cons ci ratio: 2.638395e-02	ci left: 6.790170e-01	ci right 6.972732e-01	k: 6882	n:10000
KS ci ratio: 6.152973e-02	ci left: 2.797318e-01	ci right 2.975915e-01	k: 2886	n:10000
TAOK2   10000 perm   2 sec   (4807 perm/sec)   p_kst 2.886000e-01   p_cons 6.882000e-01   p_joint 4.886000e-01

Outputting figure to mutsig2_images.part000000000171/TAOK2.5_4698_10000_0.2886_0.6882_0.4886.png
                gene_name: TAOK2
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 13 percent done.
TAS2R19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.579714e-01	ci left: 5.340171e-02	ci right 6.265786e-02	k: 579	n:10000
Cons ci ratio: 2.022577e-01	ci left: 3.252956e-02	ci right 3.994377e-02	k: 361	n:10000
KS ci ratio: 7.644396e-02	ci left: 2.001794e-01	ci right 2.161909e-01	k: 2081	n:10000
TAS2R19   10000 perm   2 sec   (6044 perm/sec)   p_kst 2.081000e-01   p_cons 3.610000e-02   p_joint 5.790000e-02

Joint ci ratio: 9.657888e-02	ci left: 7.241309e-02	ci right 7.981071e-02	k: 1521	n:20000
Cons ci ratio: 1.413087e-01	ci left: 3.442644e-02	ci right 3.970925e-02	k: 740	n:20000
KS ci ratio: 5.340739e-02	ci left: 2.065012e-01	ci right 2.178826e-01	k: 4243	n:20000
TAS2R19   20000 perm   4 sec   (5420 perm/sec)   p_kst 2.121500e-01   p_cons 3.700000e-02   p_joint 7.605000e-02

Joint ci ratio: 9.875369e-02	ci left: 4.743057e-02	ci right 5.239039e-02	k: 1496	n:30000
Cons ci ratio: 1.171695e-01	ci left: 3.385556e-02	ci right 3.810159e-02	k: 1078	n:30000
KS ci ratio: 4.233509e-02	ci left: 2.175392e-01	ci right 2.269813e-01	k: 6667	n:30000
TAS2R19   30000 perm   6 sec   (5172 perm/sec)   p_kst 2.222333e-01   p_cons 3.593333e-02   p_joint 4.986667e-02

Joint ci ratio: 1.118339e-01	ci left: 2.813107e-02	ci right 3.148765e-02	k: 1191	n:40000
Cons ci ratio: 9.605017e-02	ci left: 3.805175e-02	ci right 4.191540e-02	k: 1598	n:40000
KS ci ratio: 3.654619e-02	ci left: 2.192762e-01	ci right 2.274640e-01	k: 8934	n:40000
TAS2R19   40000 perm   8 sec   (5000 perm/sec)   p_kst 2.233500e-01   p_cons 3.995000e-02   p_joint 2.977500e-02

Joint ci ratio: 7.864154e-02	ci left: 4.547527e-02	ci right 4.921751e-02	k: 2366	n:50000
Cons ci ratio: 8.420751e-02	ci left: 3.978809e-02	ci right 4.330539e-02	k: 2076	n:50000
KS ci ratio: 3.282563e-02	ci left: 2.182641e-01	ci right 2.255683e-01	k: 11095	n:50000
TAS2R19   50000 perm   10 sec   (4867 perm/sec)   p_kst 2.219000e-01   p_cons 4.152000e-02   p_joint 4.732000e-02

Outputting figure to mutsig2_images.part000000000171/TAS2R19.5_903_50000_0.2219_0.04152_0.04732.png
                gene_name: TAS2R19
               theta_stop: 0.084 
                    nperm: 50000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.042 
      ci_cons_bounds_left: 0.040 
     ci_cons_bounds_right: 0.043 
                  p_joint: 0.047 
     ci_joint_bounds_left: 0.045 
    ci_joint_bounds_right: 0.049 

Current progress: 15 percent done.
TAS2R41
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.314294e-02	ci left: 8.929274e-01	ci right 9.048391e-01	k: 8990	n:10000
Cons ci ratio: 2.818964e-02	ci left: 6.497142e-01	ci right 6.683930e-01	k: 6591	n:10000
KS ci ratio: 2.621199e-02	ci left: 6.818387e-01	ci right 7.000499e-01	k: 6910	n:10000
TAS2R41   10000 perm   2 sec   (5859 perm/sec)   p_kst 6.910000e-01   p_cons 6.591000e-01   p_joint 8.990000e-01

Outputting figure to mutsig2_images.part000000000171/TAS2R41.5_928_10000_0.691_0.6591_0.899.png
                gene_name: TAS2R41
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 17 percent done.
TASP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.200793e-01	ci left: 9.048895e-02	ci right 1.021474e-01	k: 962	n:10000
Cons ci ratio: 5.116258e-02	ci left: 3.603273e-01	ci right 3.793486e-01	k: 3698	n:10000
KS ci ratio: 1.416829e-01	ci left: 6.604181e-02	ci right 7.620974e-02	k: 710	n:10000
TASP1   10000 perm   2 sec   (6268 perm/sec)   p_kst 7.100000e-02   p_cons 3.698000e-01   p_joint 9.620000e-02

Joint ci ratio: 7.046446e-02	ci left: 1.292581e-01	ci right 1.387486e-01	k: 2679	n:20000
Cons ci ratio: 3.616949e-02	ci left: 3.632533e-01	ci right 3.766845e-01	k: 7399	n:20000
KS ci ratio: 1.003771e-01	ci left: 6.728287e-02	ci right 7.444250e-02	k: 1416	n:20000
TASP1   20000 perm   4 sec   (5556 perm/sec)   p_kst 7.080000e-02   p_cons 3.699500e-01   p_joint 1.339500e-01

Joint ci ratio: 6.404856e-02	ci left: 1.074336e-01	ci right 1.145753e-01	k: 3329	n:30000
Cons ci ratio: 2.932848e-02	ci left: 3.677229e-01	ci right 3.787017e-01	k: 11196	n:30000
KS ci ratio: 8.205170e-02	ci left: 6.779179e-02	ci right 7.362501e-02	k: 2120	n:30000
TASP1   30000 perm   6 sec   (5307 perm/sec)   p_kst 7.066667e-02   p_cons 3.732000e-01   p_joint 1.109667e-01

Outputting figure to mutsig2_images.part000000000171/TASP1.5_1315_30000_0.070667_0.3732_0.11097.png
                gene_name: TASP1
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.071 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.074 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 19 percent done.
TATDN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.453543e-02	ci left: 7.095727e-01	ci right 7.272999e-01	k: 7185	n:10000
Cons ci ratio: 5.584290e-02	ci left: 3.207846e-01	ci right 3.393145e-01	k: 3300	n:10000
KS ci ratio: 5.767632e-03	ci left: 9.758897e-01	ci right 9.816267e-01	k: 9789	n:10000
TATDN2   10000 perm   2 sec   (5887 perm/sec)   p_kst 9.789000e-01   p_cons 3.300000e-01   p_joint 7.185000e-01

Outputting figure to mutsig2_images.part000000000171/TATDN2.5_2310_10000_0.9789_0.33_0.7185.png
                gene_name: TATDN2
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 21 percent done.
TBC1D1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.721333e-01	ci left: 4.504270e-02	ci right 5.362227e-02	k: 492	n:10000
Cons ci ratio: 1.077899e-01	ci left: 1.104696e-01	ci right 1.231546e-01	k: 1167	n:10000
KS ci ratio: 1.677072e-01	ci left: 4.744132e-02	ci right 5.622208e-02	k: 517	n:10000
TBC1D1   10000 perm   2 sec   (5028 perm/sec)   p_kst 5.170000e-02   p_cons 1.167000e-01   p_joint 4.920000e-02

Joint ci ratio: 1.153381e-01	ci left: 5.144255e-02	ci right 5.778772e-02	k: 1091	n:20000
Cons ci ratio: 7.668576e-02	ci left: 1.111014e-01	ci right 1.200107e-01	k: 2310	n:20000
KS ci ratio: 1.206928e-01	ci left: 4.706865e-02	ci right 5.316299e-02	k: 1001	n:20000
TBC1D1   20000 perm   4 sec   (4523 perm/sec)   p_kst 5.005000e-02   p_cons 1.155000e-01   p_joint 5.455000e-02

Joint ci ratio: 1.094551e-01	ci left: 3.875160e-02	ci right 4.327117e-02	k: 1229	n:30000
Cons ci ratio: 6.128736e-02	ci left: 1.163101e-01	ci right 1.236970e-01	k: 3599	n:30000
KS ci ratio: 9.903252e-02	ci left: 4.717018e-02	ci right 5.211750e-02	k: 1488	n:30000
TBC1D1   30000 perm   7 sec   (4326 perm/sec)   p_kst 4.960000e-02   p_cons 1.199667e-01   p_joint 4.096667e-02

Joint ci ratio: 8.632308e-02	ci left: 4.690483e-02	ci right 5.116094e-02	k: 1960	n:40000
Cons ci ratio: 5.292632e-02	ci left: 1.173990e-01	ci right 1.238062e-01	k: 4823	n:40000
KS ci ratio: 8.443822e-02	ci left: 4.896221e-02	ci right 5.330325e-02	k: 2044	n:40000
TBC1D1   40000 perm   9 sec   (4215 perm/sec)   p_kst 5.110000e-02   p_cons 1.205750e-01   p_joint 4.900000e-02

Outputting figure to mutsig2_images.part000000000171/TBC1D1.5_3583_40000_0.0511_0.12058_0.049.png
                gene_name: TBC1D1
               theta_stop: 0.086 
                    nperm: 40000 
                     p_ks: 0.051 
        ci_ks_bounds_left: 0.049 
       ci_ks_bounds_right: 0.053 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.049 
     ci_joint_bounds_left: 0.047 
    ci_joint_bounds_right: 0.051 

Current progress: 23 percent done.
TBC1D14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.965300e-02	ci left: 6.264811e-01	ci right 6.454396e-01	k: 6360	n:10000
Cons ci ratio: 1.685487e-02	ci left: 8.367382e-01	ci right 8.510609e-01	k: 8440	n:10000
KS ci ratio: 3.497592e-02	ci left: 5.468981e-01	ci right 5.664689e-01	k: 5567	n:10000
TBC1D14   10000 perm   2 sec   (5596 perm/sec)   p_kst 5.567000e-01   p_cons 8.440000e-01   p_joint 6.360000e-01

Outputting figure to mutsig2_images.part000000000171/TBC1D14.5_2141_10000_0.5567_0.844_0.636.png
                gene_name: TBC1D14
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 26 percent done.
TAL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.285168e-02	ci left: 4.457032e-01	ci right 4.653227e-01	k: 4555	n:10000
Cons ci ratio: 4.819129e-02	ci left: 3.884867e-01	ci right 4.077727e-01	k: 3981	n:10000
KS ci ratio: 6.170998e-02	ci left: 2.785431e-01	ci right 2.963808e-01	k: 2874	n:10000
TAL1   10000 perm   2 sec   (5977 perm/sec)   p_kst 2.874000e-01   p_cons 3.981000e-01   p_joint 4.555000e-01

Outputting figure to mutsig2_images.part000000000171/TAL1.4_1008_10000_0.2874_0.3981_0.4555.png
                gene_name: TAL1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 28 percent done.
TANK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.389257e-02	ci left: 1.716291e-01	ci right 1.867583e-01	k: 1791	n:10000
Cons ci ratio: 2.468251e-01	ci left: 2.155910e-02	ci right 2.772208e-02	k: 245	n:10000
KS ci ratio: 2.799546e-02	ci left: 6.528339e-01	ci right 6.714715e-01	k: 6622	n:10000
TANK   10000 perm   2 sec   (6026 perm/sec)   p_kst 6.622000e-01   p_cons 2.450000e-02   p_joint 1.791000e-01

Joint ci ratio: 6.075172e-02	ci left: 1.670398e-01	ci right 1.775557e-01	k: 3445	n:20000
Cons ci ratio: 1.683252e-01	ci left: 2.417421e-02	ci right 2.866491e-02	k: 527	n:20000
KS ci ratio: 1.983860e-02	ci left: 6.546427e-01	ci right 6.678104e-01	k: 13225	n:20000
TANK   20000 perm   4 sec   (5381 perm/sec)   p_kst 6.612500e-01   p_cons 2.635000e-02   p_joint 1.722500e-01

Joint ci ratio: 5.486810e-02	ci left: 1.413960e-01	ci right 1.494062e-01	k: 4361	n:30000
Cons ci ratio: 1.364677e-01	ci left: 2.493733e-02	ci right 2.862175e-02	k: 802	n:30000
KS ci ratio: 1.611708e-02	ci left: 6.581208e-01	ci right 6.688475e-01	k: 19905	n:30000
TANK   30000 perm   6 sec   (5128 perm/sec)   p_kst 6.635000e-01   p_cons 2.673333e-02   p_joint 1.453667e-01

Joint ci ratio: 5.082742e-02	ci left: 1.261500e-01	ci right 1.327539e-01	k: 5177	n:40000
Cons ci ratio: 1.173801e-01	ci left: 2.553066e-02	ci right 2.873849e-02	k: 1084	n:40000
KS ci ratio: 1.397430e-02	ci left: 6.583185e-01	ci right 6.676078e-01	k: 26519	n:40000
TANK   40000 perm   8 sec   (4957 perm/sec)   p_kst 6.629750e-01   p_cons 2.710000e-02   p_joint 1.294250e-01

Joint ci ratio: 5.348791e-02	ci left: 9.439955e-02	ci right 9.960734e-02	k: 4849	n:50000
Cons ci ratio: 1.119369e-01	ci left: 2.259837e-02	ci right 2.529729e-02	k: 1196	n:50000
KS ci ratio: 1.188185e-02	ci left: 6.811285e-01	ci right 6.892900e-01	k: 34261	n:50000
TANK   50000 perm   10 sec   (4830 perm/sec)   p_kst 6.852200e-01   p_cons 2.392000e-02   p_joint 9.698000e-02

Joint ci ratio: 3.947537e-02	ci left: 1.383566e-01	ci right 1.439448e-01	k: 8468	n:60000
Cons ci ratio: 9.740541e-02	ci left: 2.500163e-02	ci right 2.757780e-02	k: 1576	n:60000
KS ci ratio: 1.085844e-02	ci left: 6.810152e-01	ci right 6.884670e-01	k: 41085	n:60000
TANK   60000 perm   13 sec   (4719 perm/sec)   p_kst 6.847500e-01   p_cons 2.626667e-02   p_joint 1.411333e-01

Outputting figure to mutsig2_images.part000000000171/TANK.4_1339_60000_0.68475_0.026267_0.14113.png
                gene_name: TANK
               theta_stop: 0.097 
                    nperm: 60000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.026 
      ci_cons_bounds_left: 0.025 
     ci_cons_bounds_right: 0.028 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.14 

Current progress: 30 percent done.
TAOK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.842438e-02	ci left: 2.385720e-01	ci right 2.555756e-01	k: 2470	n:10000
KS ci ratio: 2.182909e-02	ci left: 7.548431e-01	ci right 7.716033e-01	k: 7633	n:10000
TAOK3   10000 perm   2 sec   (5710 perm/sec)   p_kst 7.633000e-01   p_cons 2.470000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000171/TAOK3.4_2773_10000_0.7633_0.247_1.png
                gene_name: TAOK3
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 32 percent done.
TAPBP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.410571e-02	ci left: 5.593253e-01	ci right 5.788345e-01	k: 5691	n:10000
Cons ci ratio: 7.776672e-02	ci left: 1.946611e-01	ci right 2.105125e-01	k: 2025	n:10000
KS ci ratio: 2.455968e-02	ci left: 7.091690e-01	ci right 7.269038e-01	k: 7181	n:10000
TAPBP   10000 perm   2 sec   (5926 perm/sec)   p_kst 7.181000e-01   p_cons 2.025000e-01   p_joint 5.691000e-01

Outputting figure to mutsig2_images.part000000000171/TAPBP.4_1559_10000_0.7181_0.2025_0.5691.png
                gene_name: TAPBP
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 34 percent done.
TARS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.491220e-02	ci left: 5.477998e-01	ci right 5.673666e-01	k: 5576	n:10000
Cons ci ratio: 1.512887e-02	ci left: 8.636592e-01	ci right 8.769242e-01	k: 8704	n:10000
KS ci ratio: 5.589344e-02	ci left: 3.203876e-01	ci right 3.389118e-01	k: 3296	n:10000
TARS2   10000 perm   2 sec   (5576 perm/sec)   p_kst 3.296000e-01   p_cons 8.704000e-01   p_joint 5.576000e-01

Outputting figure to mutsig2_images.part000000000171/TARS2.4_2229_10000_0.3296_0.8704_0.5576.png
                gene_name: TARS2
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 36 percent done.
TARSL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.928093e-02	ci left: 2.340268e-01	ci right 2.509234e-01	k: 2424	n:10000
Cons ci ratio: 1.420320e-02	ci left: 8.775616e-01	ci right 8.902138e-01	k: 8840	n:10000
KS ci ratio: 1.264263e-01	ci left: 8.212963e-02	ci right 9.331191e-02	k: 876	n:10000
TARSL2   10000 perm   2 sec   (5838 perm/sec)   p_kst 8.760000e-02   p_cons 8.840000e-01   p_joint 2.424000e-01

Joint ci ratio: 6.217379e-02	ci left: 1.606203e-01	ci right 1.709771e-01	k: 3315	n:20000
Cons ci ratio: 1.008606e-02	ci left: 8.785663e-01	ci right 8.875220e-01	k: 17662	n:20000
KS ci ratio: 8.843498e-02	ci left: 8.548063e-02	ci right 9.343920e-02	k: 1788	n:20000
TARSL2   20000 perm   4 sec   (5147 perm/sec)   p_kst 8.940000e-02   p_cons 8.831000e-01   p_joint 1.657500e-01

Outputting figure to mutsig2_images.part000000000171/TARSL2.4_2485_20000_0.0894_0.8831_0.16575.png
                gene_name: TARSL2
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.089 
        ci_ks_bounds_left: 0.085 
       ci_ks_bounds_right: 0.093 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 38 percent done.
TAS2R1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.277074e-01	ci left: 8.057611e-02	ci right 9.166638e-02	k: 860	n:10000
Cons ci ratio: 4.063929e-02	ci left: 4.720631e-01	ci right 4.917475e-01	k: 4819	n:10000
KS ci ratio: 1.658582e-01	ci left: 4.849762e-02	ci right 5.736510e-02	k: 528	n:10000
TAS2R1   10000 perm   2 sec   (6261 perm/sec)   p_kst 5.280000e-02   p_cons 4.819000e-01   p_joint 8.600000e-02

Joint ci ratio: 8.144539e-02	ci left: 9.955670e-02	ci right 1.080589e-01	k: 2075	n:20000
Cons ci ratio: 2.852649e-02	ci left: 4.786509e-01	ci right 4.925533e-01	k: 9712	n:20000
KS ci ratio: 1.191363e-01	ci left: 4.828298e-02	ci right 5.444828e-02	k: 1026	n:20000
TAS2R1   20000 perm   4 sec   (5562 perm/sec)   p_kst 5.130000e-02   p_cons 4.856000e-01   p_joint 1.037500e-01

Joint ci ratio: 6.812281e-02	ci left: 9.600373e-02	ci right 1.028074e-01	k: 2981	n:30000
Cons ci ratio: 2.199132e-02	ci left: 5.086599e-01	ci right 5.200040e-01	k: 15430	n:30000
KS ci ratio: 9.611330e-02	ci left: 5.000295e-02	ci right 5.508414e-02	k: 1575	n:30000
TAS2R1   30000 perm   6 sec   (5243 perm/sec)   p_kst 5.250000e-02   p_cons 5.143333e-01   p_joint 9.936667e-02

Outputting figure to mutsig2_images.part000000000171/TAS2R1.4_904_30000_0.0525_0.51433_0.099367.png
                gene_name: TAS2R1
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.052 
        ci_ks_bounds_left: 0.050 
       ci_ks_bounds_right: 0.055 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.099 
     ci_joint_bounds_left: 0.096 
    ci_joint_bounds_right: 0.10 

Current progress: 40 percent done.
TAS2R16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.071561e-02	ci left: 3.644048e-01	ci right 3.834687e-01	k: 3739	n:10000
Cons ci ratio: 5.252887e-02	ci left: 3.481986e-01	ci right 3.670844e-01	k: 3576	n:10000
KS ci ratio: 7.419881e-02	ci left: 2.100392e-01	ci right 2.263253e-01	k: 2181	n:10000
TAS2R16   10000 perm   2 sec   (6067 perm/sec)   p_kst 2.181000e-01   p_cons 3.576000e-01   p_joint 3.739000e-01

Outputting figure to mutsig2_images.part000000000171/TAS2R16.4_880_10000_0.2181_0.3576_0.3739.png
                gene_name: TAS2R16
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 43 percent done.
TBC1D15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.452325e-01	ci left: 6.294902e-02	ci right 7.290448e-02	k: 678	n:10000
Cons ci ratio: 2.650079e-02	ci left: 6.771026e-01	ci right 6.953888e-01	k: 6863	n:10000
KS ci ratio: 2.145532e-01	ci left: 2.882687e-02	ci right 3.584904e-02	k: 322	n:10000
TBC1D15   10000 perm   2 sec   (5418 perm/sec)   p_kst 3.220000e-02   p_cons 6.863000e-01   p_joint 6.780000e-02

Joint ci ratio: 7.836327e-02	ci left: 1.068256e-01	ci right 1.155878e-01	k: 2223	n:20000
Cons ci ratio: 1.897921e-02	ci left: 6.742884e-01	ci right 6.872590e-01	k: 13616	n:20000
KS ci ratio: 1.519588e-01	ci left: 2.974850e-02	ci right 3.468873e-02	k: 643	n:20000
TBC1D15   20000 perm   4 sec   (4863 perm/sec)   p_kst 3.215000e-02   p_cons 6.808000e-01   p_joint 1.111500e-01

Joint ci ratio: 6.168721e-02	ci left: 1.149618e-01	ci right 1.223123e-01	k: 3558	n:30000
Cons ci ratio: 1.554181e-02	ci left: 6.742189e-01	ci right 6.848130e-01	k: 20386	n:30000
KS ci ratio: 1.235472e-01	ci left: 3.045747e-02	ci right 3.450040e-02	k: 973	n:30000
TBC1D15   30000 perm   6 sec   (4643 perm/sec)   p_kst 3.243333e-02   p_cons 6.795333e-01   p_joint 1.186000e-01

Joint ci ratio: 6.837743e-02	ci left: 7.332299e-02	ci right 7.853878e-02	k: 3036	n:40000
Cons ci ratio: 1.342442e-02	ci left: 6.760807e-01	ci right 6.852431e-01	k: 27227	n:40000
KS ci ratio: 1.080169e-01	ci left: 3.015070e-02	ci right 3.361770e-02	k: 1274	n:40000
TBC1D15   40000 perm   9 sec   (4507 perm/sec)   p_kst 3.185000e-02   p_cons 6.806750e-01   p_joint 7.590000e-02

Joint ci ratio: 6.026362e-02	ci left: 7.566396e-02	ci right 8.038517e-02	k: 3900	n:50000
Cons ci ratio: 1.201535e-02	ci left: 6.762721e-01	ci right 6.844669e-01	k: 34019	n:50000
KS ci ratio: 9.635615e-02	ci left: 3.049407e-02	ci right 3.360057e-02	k: 1601	n:50000
TBC1D15   50000 perm   11 sec   (4402 perm/sec)   p_kst 3.202000e-02   p_cons 6.803800e-01   p_joint 7.800000e-02

Outputting figure to mutsig2_images.part000000000171/TBC1D15.4_2272_50000_0.03202_0.68038_0.078.png
                gene_name: TBC1D15
               theta_stop: 0.096 
                    nperm: 50000 
                     p_ks: 0.032 
        ci_ks_bounds_left: 0.030 
       ci_ks_bounds_right: 0.034 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.078 
     ci_joint_bounds_left: 0.076 
    ci_joint_bounds_right: 0.080 

Current progress: 45 percent done.
TBC1D16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 2.537862e-01	ci left: 2.033901e-02	ci right 2.634310e-02	k: 232	n:10000
KS ci ratio: 5.132010e-01	ci left: 4.319899e-03	ci right 7.378784e-03	k: 57	n:10000
TBC1D16   10000 perm   2 sec   (5884 perm/sec)   p_kst 5.700000e-03   p_cons 2.320000e-02   p_joint 0

Joint ci ratio: 2.993624e-01	ci left: 7.228280e-03	ci right 9.817657e-03	k: 169	n:20000
Cons ci ratio: 1.704933e-01	ci left: 2.355113e-02	ci right 2.798821e-02	k: 514	n:20000
KS ci ratio: 3.523572e-01	ci left: 5.068179e-03	ci right 7.279094e-03	k: 122	n:20000
TBC1D16   20000 perm   4 sec   (5244 perm/sec)   p_kst 6.100000e-03   p_cons 2.570000e-02   p_joint 8.450000e-03

Joint ci ratio: 3.171422e-01	ci left: 4.264115e-03	ci right 5.900658e-03	k: 151	n:30000
Cons ci ratio: 1.382469e-01	ci left: 2.429301e-02	ci right 2.793288e-02	k: 782	n:30000
KS ci ratio: 2.963065e-01	ci left: 4.941315e-03	ci right 6.689812e-03	k: 173	n:30000
TBC1D16   30000 perm   6 sec   (4999 perm/sec)   p_kst 5.766667e-03   p_cons 2.606667e-02   p_joint 5.033333e-03

Joint ci ratio: 3.445755e-01	ci left: 2.670359e-03	ci right 3.803659e-03	k: 128	n:40000
Cons ci ratio: 1.197848e-01	ci left: 2.451102e-02	ci right 2.765829e-02	k: 1042	n:40000
KS ci ratio: 2.710921e-01	ci left: 4.495471e-03	ci right 5.927807e-03	k: 207	n:40000
TBC1D16   40000 perm   8 sec   (4841 perm/sec)   p_kst 5.175000e-03   p_cons 2.605000e-02   p_joint 3.200000e-03

Joint ci ratio: 3.916039e-01	ci left: 1.609529e-03	ci right 2.410060e-03	k: 99	n:50000
Cons ci ratio: 1.123220e-01	ci left: 2.244275e-02	ci right 2.513293e-02	k: 1188	n:50000
KS ci ratio: 2.348743e-01	ci left: 4.889416e-03	ci right 6.208989e-03	k: 276	n:50000
TBC1D16   50000 perm   11 sec   (4720 perm/sec)   p_kst 5.520000e-03   p_cons 2.376000e-02   p_joint 1.980000e-03

Joint ci ratio: 4.379734e-01	ci left: 1.042552e-03	ci right 1.640693e-03	k: 79	n:60000
Cons ci ratio: 1.014056e-01	ci left: 2.306640e-02	ci right 2.554657e-02	k: 1457	n:60000
KS ci ratio: 2.126167e-01	ci left: 5.034365e-03	ci right 6.247539e-03	k: 337	n:60000
TBC1D16   60000 perm   13 sec   (4616 perm/sec)   p_kst 5.616667e-03   p_cons 2.428333e-02   p_joint 1.316667e-03

Joint ci ratio: 4.617355e-01	ci left: 7.922479e-04	ci right 1.279214e-03	k: 71	n:70000
Cons ci ratio: 9.362991e-02	ci left: 2.328361e-02	ci right 2.558462e-02	k: 1709	n:70000
KS ci ratio: 1.813760e-01	ci left: 6.027186e-03	ci right 7.242825e-03	k: 463	n:70000
TBC1D16   70000 perm   15 sec   (4518 perm/sec)   p_kst 6.614286e-03   p_cons 2.441429e-02   p_joint 1.014286e-03

Joint ci ratio: 4.617656e-01	ci left: 6.932079e-04	ci right 1.119331e-03	k: 71	n:80000
Cons ci ratio: 8.742901e-02	ci left: 2.343975e-02	ci right 2.559492e-02	k: 1960	n:80000
KS ci ratio: 1.706832e-01	ci left: 5.990754e-03	ci right 7.120478e-03	k: 523	n:80000
TBC1D16   80000 perm   18 sec   (4431 perm/sec)   p_kst 6.537500e-03   p_cons 2.450000e-02   p_joint 8.875000e-04

Joint ci ratio: 5.101704e-01	ci left: 4.893889e-04	ci right 8.330153e-04	k: 58	n:90000
Cons ci ratio: 8.248882e-02	ci left: 2.346712e-02	ci right 2.549702e-02	k: 2202	n:90000
KS ci ratio: 1.734294e-01	ci left: 5.154796e-03	ci right 6.144143e-03	k: 507	n:90000
TBC1D16   90000 perm   21 sec   (4339 perm/sec)   p_kst 5.633333e-03   p_cons 2.446667e-02   p_joint 6.444444e-04

Joint ci ratio: 2.314616e-01	ci left: 2.529085e-03	ci right 3.200266e-03	k: 285	n:100000
Cons ci ratio: 7.797507e-02	ci left: 2.368797e-02	ci right 2.561974e-02	k: 2464	n:100000
KS ci ratio: 1.643021e-01	ci left: 5.194825e-03	ci right 6.134196e-03	k: 565	n:100000
TBC1D16   100000 perm   24 sec   (4254 perm/sec)   p_kst 5.650000e-03   p_cons 2.464000e-02   p_joint 2.850000e-03

Joint ci ratio: 2.252598e-01	ci left: 2.436289e-03	ci right 3.063113e-03	k: 301	n:110000
Cons ci ratio: 7.412940e-02	ci left: 2.387113e-02	ci right 2.571768e-02	k: 2726	n:110000
KS ci ratio: 1.554799e-01	ci left: 5.298596e-03	ci right 6.200490e-03	k: 631	n:110000
TBC1D16   110000 perm   26 sec   (4178 perm/sec)   p_kst 5.736364e-03   p_cons 2.478182e-02   p_joint 2.736364e-03

Joint ci ratio: 2.209279e-01	ci left: 2.327662e-03	ci right 2.913454e-03	k: 313	n:120000
Cons ci ratio: 7.094796e-02	ci left: 2.392744e-02	ci right 2.569563e-02	k: 2976	n:120000
KS ci ratio: 1.496768e-01	ci left: 5.257800e-03	ci right 6.116354e-03	k: 681	n:120000
TBC1D16   120000 perm   29 sec   (4106 perm/sec)   p_kst 5.675000e-03   p_cons 2.480000e-02   p_joint 2.608333e-03

Joint ci ratio: 2.419333e-01	ci left: 1.771690e-03	ci right 2.266330e-03	k: 261	n:130000
Cons ci ratio: 6.828503e-02	ci left: 2.387818e-02	ci right 2.557388e-02	k: 3213	n:130000
KS ci ratio: 1.431085e-01	ci left: 5.327648e-03	ci right 6.156171e-03	k: 745	n:130000
TBC1D16   130000 perm   32 sec   (4037 perm/sec)   p_kst 5.730769e-03   p_cons 2.471538e-02   p_joint 2.007692e-03

Joint ci ratio: 1.672788e-01	ci left: 3.580251e-03	ci right 4.240557e-03	k: 546	n:140000
Cons ci ratio: 6.571581e-02	ci left: 2.397057e-02	ci right 2.560633e-02	k: 3469	n:140000
KS ci ratio: 1.374206e-01	ci left: 5.381324e-03	ci right 6.182211e-03	k: 808	n:140000
TBC1D16   140000 perm   35 sec   (3970 perm/sec)   p_kst 5.771429e-03   p_cons 2.477857e-02   p_joint 3.900000e-03

Joint ci ratio: 1.805320e-01	ci left: 2.850446e-03	ci right 3.422360e-03	k: 469	n:150000
Cons ci ratio: 6.346002e-02	ci left: 2.401886e-02	ci right 2.559958e-02	k: 3720	n:150000
KS ci ratio: 1.224425e-01	ci left: 6.370944e-03	ci right 7.208292e-03	k: 1017	n:150000
TBC1D16   150000 perm   38 sec   (3908 perm/sec)   p_kst 6.780000e-03   p_cons 2.480000e-02   p_joint 3.126667e-03

Joint ci ratio: 1.843247e-01	ci left: 2.558929e-03	ci right 3.084344e-03	k: 450	n:160000
Cons ci ratio: 6.125579e-02	ci left: 2.419124e-02	ci right 2.572604e-02	k: 3992	n:160000
KS ci ratio: 1.180013e-01	ci left: 6.445616e-03	ci right 7.259908e-03	k: 1095	n:160000
TBC1D16   160000 perm   42 sec   (3848 perm/sec)   p_kst 6.843750e-03   p_cons 2.495000e-02   p_joint 2.812500e-03

Joint ci ratio: 1.905851e-01	ci left: 2.245784e-03	ci right 2.724376e-03	k: 421	n:170000
Cons ci ratio: 5.946685e-02	ci left: 2.418185e-02	ci right 2.566971e-02	k: 4236	n:170000
KS ci ratio: 1.146020e-01	ci left: 6.443404e-03	ci right 7.232379e-03	k: 1161	n:170000
TBC1D16   170000 perm   45 sec   (3789 perm/sec)   p_kst 6.829412e-03   p_cons 2.491765e-02   p_joint 2.476471e-03

Joint ci ratio: 1.853868e-01	ci left: 2.248078e-03	ci right 2.712622e-03	k: 445	n:180000
Cons ci ratio: 5.809247e-02	ci left: 2.395501e-02	ci right 2.539369e-02	k: 4440	n:180000
KS ci ratio: 1.119404e-01	ci left: 6.387723e-03	ci right 7.150515e-03	k: 1217	n:180000
TBC1D16   180000 perm   48 sec   (3733 perm/sec)   p_kst 6.761111e-03   p_cons 2.466667e-02   p_joint 2.472222e-03

Joint ci ratio: 1.847770e-01	ci left: 2.144805e-03	ci right 2.586387e-03	k: 448	n:190000
Cons ci ratio: 5.656609e-02	ci left: 2.395483e-02	ci right 2.535446e-02	k: 4683	n:190000
KS ci ratio: 1.094559e-01	ci left: 6.338094e-03	ci right 7.077077e-03	k: 1273	n:190000
TBC1D16   190000 perm   52 sec   (3680 perm/sec)   p_kst 6.700000e-03   p_cons 2.464737e-02   p_joint 2.357895e-03

Joint ci ratio: 1.796478e-01	ci left: 2.161638e-03	ci right 2.592988e-03	k: 474	n:200000
Cons ci ratio: 5.517701e-02	ci left: 2.393538e-02	ci right 2.529844e-02	k: 4922	n:200000
KS ci ratio: 1.065267e-01	ci left: 6.366606e-03	ci right 7.087803e-03	k: 1344	n:200000
TBC1D16   200000 perm   55 sec   (3627 perm/sec)   p_kst 6.720000e-03   p_cons 2.461000e-02   p_joint 2.370000e-03

Joint ci ratio: 1.813885e-01	ci left: 2.017768e-03	ci right 2.424739e-03	k: 465	n:210000
Cons ci ratio: 5.386943e-02	ci left: 2.393227e-02	ci right 2.526185e-02	k: 5164	n:210000
KS ci ratio: 1.040429e-01	ci left: 6.364807e-03	ci right 7.067960e-03	k: 1409	n:210000
TBC1D16   210000 perm   59 sec   (3574 perm/sec)   p_kst 6.709524e-03   p_cons 2.459048e-02   p_joint 2.214286e-03

Joint ci ratio: 1.774350e-01	ci left: 2.017219e-03	ci right 2.414260e-03	k: 486	n:220000
Cons ci ratio: 5.269559e-02	ci left: 2.388941e-02	ci right 2.518680e-02	k: 5397	n:220000
KS ci ratio: 1.017251e-01	ci left: 6.363349e-03	ci right 7.049745e-03	k: 1474	n:220000
TBC1D16   220000 perm   62 sec   (3523 perm/sec)   p_kst 6.700000e-03   p_cons 2.453182e-02   p_joint 2.209091e-03

Joint ci ratio: 1.725420e-01	ci left: 2.045924e-03	ci right 2.436354e-03	k: 514	n:230000
Cons ci ratio: 5.145494e-02	ci left: 2.397935e-02	ci right 2.525006e-02	k: 5660	n:230000
KS ci ratio: 9.965342e-02	ci left: 6.349456e-03	ci right 7.019588e-03	k: 1536	n:230000
TBC1D16   230000 perm   66 sec   (3475 perm/sec)   p_kst 6.678261e-03   p_cons 2.460870e-02   p_joint 2.234783e-03

Joint ci ratio: 1.720486e-01	ci left: 1.972632e-03	ci right 2.347887e-03	k: 517	n:240000
Cons ci ratio: 5.038962e-02	ci left: 2.397570e-02	ci right 2.521915e-02	k: 5902	n:240000
KS ci ratio: 9.721488e-02	ci left: 6.401903e-03	ci right 7.060094e-03	k: 1614	n:240000
TBC1D16   240000 perm   70 sec   (3429 perm/sec)   p_kst 6.725000e-03   p_cons 2.459167e-02   p_joint 2.154167e-03

Joint ci ratio: 1.688209e-01	ci left: 1.970314e-03	ci right 2.337381e-03	k: 537	n:250000
Cons ci ratio: 4.942084e-02	ci left: 2.394098e-02	ci right 2.515807e-02	k: 6136	n:250000
KS ci ratio: 9.548795e-02	ci left: 6.376136e-03	ci right 7.019381e-03	k: 1673	n:250000
TBC1D16   250000 perm   74 sec   (3385 perm/sec)   p_kst 6.692000e-03   p_cons 2.454400e-02   p_joint 2.148000e-03

Joint ci ratio: 1.699394e-01	ci left: 1.868743e-03	ci right 2.219429e-03	k: 530	n:260000
Cons ci ratio: 4.855276e-02	ci left: 2.386354e-02	ci right 2.505479e-02	k: 6358	n:260000
KS ci ratio: 9.352446e-02	ci left: 6.397526e-03	ci right 7.028930e-03	k: 1744	n:260000
TBC1D16   260000 perm   78 sec   (3339 perm/sec)   p_kst 6.707692e-03   p_cons 2.445385e-02   p_joint 2.038462e-03

Joint ci ratio: 1.693081e-01	ci left: 1.813711e-03	ci right 2.152677e-03	k: 534	n:270000
Cons ci ratio: 4.771400e-02	ci left: 2.380665e-02	ci right 2.497396e-02	k: 6584	n:270000
KS ci ratio: 9.190688e-02	ci left: 6.384884e-03	ci right 7.003555e-03	k: 1806	n:270000
TBC1D16   270000 perm   82 sec   (3295 perm/sec)   p_kst 6.688889e-03   p_cons 2.438519e-02   p_joint 1.977778e-03

Joint ci ratio: 1.679050e-01	ci left: 1.779720e-03	ci right 2.109297e-03	k: 543	n:280000
Cons ci ratio: 4.681519e-02	ci left: 2.385638e-02	ci right 2.500350e-02	k: 6839	n:280000
KS ci ratio: 9.046794e-02	ci left: 6.359267e-03	ci right 6.965298e-03	k: 1864	n:280000
TBC1D16   280000 perm   86 sec   (3254 perm/sec)   p_kst 6.657143e-03   p_cons 2.442500e-02   p_joint 1.939286e-03

Joint ci ratio: 1.674487e-01	ci left: 1.728257e-03	ci right 2.047346e-03	k: 546	n:290000
Cons ci ratio: 4.392038e-02	ci left: 2.614700e-02	ci right 2.732456e-02	k: 7752	n:290000
KS ci ratio: 8.890854e-02	ci left: 6.362464e-03	ci right 6.957804e-03	k: 1930	n:290000
TBC1D16   290000 perm   90 sec   (3207 perm/sec)   p_kst 6.655172e-03   p_cons 2.673103e-02   p_joint 1.882759e-03

Joint ci ratio: 1.650529e-01	ci left: 1.721762e-03	ci right 2.034653e-03	k: 562	n:300000
Cons ci ratio: 4.318866e-02	ci left: 2.614914e-02	ci right 2.730669e-02	k: 8017	n:300000
KS ci ratio: 8.718568e-02	ci left: 6.401402e-03	ci right 6.988188e-03	k: 2007	n:300000
TBC1D16   300000 perm   95 sec   (3169 perm/sec)   p_kst 6.690000e-03   p_cons 2.672333e-02   p_joint 1.873333e-03

Joint ci ratio: 1.724244e-01	ci left: 1.520994e-03	ci right 1.811030e-03	k: 515	n:310000
Cons ci ratio: 4.243710e-02	ci left: 2.621834e-02	ci right 2.735827e-02	k: 8303	n:310000
KS ci ratio: 8.589166e-02	ci left: 6.387419e-03	ci right 6.963797e-03	k: 2068	n:310000
TBC1D16   310000 perm   99 sec   (3132 perm/sec)   p_kst 6.670968e-03   p_cons 2.678387e-02   p_joint 1.661290e-03

Joint ci ratio: 1.371364e-01	ci left: 2.372181e-03	ci right 2.724424e-03	k: 814	n:320000
Cons ci ratio: 4.179349e-02	ci left: 2.619677e-02	ci right 2.731807e-02	k: 8561	n:320000
KS ci ratio: 8.475379e-02	ci left: 6.359074e-03	ci right 6.924916e-03	k: 2124	n:320000
TBC1D16   320000 perm   103 sec   (3095 perm/sec)   p_kst 6.637500e-03   p_cons 2.675312e-02   p_joint 2.543750e-03

Joint ci ratio: 1.356482e-01	ci left: 2.352980e-03	ci right 2.698273e-03	k: 832	n:330000
Cons ci ratio: 4.113280e-02	ci left: 2.623363e-02	ci right 2.733833e-02	k: 8838	n:330000
KS ci ratio: 8.352514e-02	ci left: 6.353266e-03	ci right 6.909996e-03	k: 2187	n:330000
TBC1D16   330000 perm   108 sec   (3060 perm/sec)   p_kst 6.627273e-03   p_cons 2.678182e-02   p_joint 2.521212e-03

Joint ci ratio: 1.344452e-01	ci left: 2.326399e-03	ci right 2.664522e-03	k: 847	n:340000
Cons ci ratio: 4.051391e-02	ci left: 2.625389e-02	ci right 2.734243e-02	k: 9110	n:340000
KS ci ratio: 8.220150e-02	ci left: 6.370904e-03	ci right 6.919909e-03	k: 2258	n:340000
TBC1D16   340000 perm   112 sec   (3025 perm/sec)   p_kst 6.641176e-03   p_cons 2.679412e-02   p_joint 2.491176e-03

Joint ci ratio: 1.743116e-01	ci left: 1.317089e-03	ci right 1.571280e-03	k: 504	n:350000
Cons ci ratio: 3.991558e-02	ci left: 2.628160e-02	ci right 2.735482e-02	k: 9385	n:350000
KS ci ratio: 8.092138e-02	ci left: 6.390399e-03	ci right 6.932103e-03	k: 2330	n:350000
TBC1D16   350000 perm   117 sec   (2989 perm/sec)   p_kst 6.657143e-03   p_cons 2.681429e-02   p_joint 1.440000e-03

Joint ci ratio: 1.722773e-01	ci left: 1.312391e-03	ci right 1.562411e-03	k: 516	n:360000
Cons ci ratio: 3.939331e-02	ci left: 2.624186e-02	ci right 2.729911e-02	k: 9636	n:360000
KS ci ratio: 7.986673e-02	ci left: 6.381646e-03	ci right 6.915230e-03	k: 2392	n:360000
TBC1D16   360000 perm   122 sec   (2956 perm/sec)   p_kst 6.644444e-03   p_cons 2.676667e-02   p_joint 1.433333e-03

Joint ci ratio: 1.757177e-01	ci left: 1.225216e-03	ci right 1.463785e-03	k: 496	n:370000
Cons ci ratio: 3.881646e-02	ci left: 2.630340e-02	ci right 2.734727e-02	k: 9924	n:370000
KS ci ratio: 7.878767e-02	ci left: 6.384009e-03	ci right 6.910248e-03	k: 2458	n:370000
TBC1D16   370000 perm   127 sec   (2922 perm/sec)   p_kst 6.643243e-03   p_cons 2.682162e-02   p_joint 1.340541e-03

Joint ci ratio: 1.803203e-01	ci left: 1.130110e-03	ci right 1.356553e-03	k: 471	n:380000
Cons ci ratio: 3.834532e-02	ci left: 2.625231e-02	ci right 2.728123e-02	k: 10170	n:380000
KS ci ratio: 7.764293e-02	ci left: 6.404360e-03	ci right 6.924259e-03	k: 2531	n:380000
TBC1D16   380000 perm   132 sec   (2890 perm/sec)   p_kst 6.660526e-03   p_cons 2.676316e-02   p_joint 1.239474e-03

Joint ci ratio: 1.918603e-01	ci left: 9.666621e-04	ci right 1.174199e-03	k: 416	n:390000
Cons ci ratio: 3.788533e-02	ci left: 2.621154e-02	ci right 2.722627e-02	k: 10419	n:390000
KS ci ratio: 7.639919e-02	ci left: 6.448872e-03	ci right 6.963626e-03	k: 2614	n:390000
TBC1D16   390000 perm   136 sec   (2858 perm/sec)   p_kst 6.702564e-03   p_cons 2.671538e-02   p_joint 1.066667e-03

Joint ci ratio: 1.889373e-01	ci left: 9.734468e-04	ci right 1.178891e-03	k: 429	n:400000
Cons ci ratio: 3.740190e-02	ci left: 2.622738e-02	ci right 2.722949e-02	k: 10690	n:400000
KS ci ratio: 7.543889e-02	ci left: 6.451971e-03	ci right 6.960215e-03	k: 2681	n:400000
TBC1D16   400000 perm   142 sec   (2826 perm/sec)   p_kst 6.702500e-03   p_cons 2.672500e-02   p_joint 1.072500e-03

Joint ci ratio: 1.861439e-01	ci left: 9.799232e-04	ci right 1.183331e-03	k: 442	n:410000
Cons ci ratio: 3.695903e-02	ci left: 2.621110e-02	ci right 2.720048e-02	k: 10948	n:410000
KS ci ratio: 7.454121e-02	ci left: 6.450169e-03	ci right 6.951963e-03	k: 2746	n:410000
TBC1D16   410000 perm   147 sec   (2795 perm/sec)   p_kst 6.697561e-03   p_cons 2.670244e-02   p_joint 1.078049e-03

Joint ci ratio: 1.857271e-01	ci left: 9.611311e-04	ci right 1.160141e-03	k: 444	n:420000
Cons ci ratio: 3.654997e-02	ci left: 2.616971e-02	ci right 2.714636e-02	k: 11195	n:420000
KS ci ratio: 7.364847e-02	ci left: 6.453162e-03	ci right 6.948918e-03	k: 2813	n:420000
TBC1D16   420000 perm   152 sec   (2766 perm/sec)   p_kst 6.697619e-03   p_cons 2.665476e-02   p_joint 1.057143e-03

Joint ci ratio: 1.460689e-01	ci left: 1.549941e-03	ci right 1.796387e-03	k: 718	n:430000
Cons ci ratio: 3.616069e-02	ci left: 2.612108e-02	ci right 2.708531e-02	k: 11438	n:430000
KS ci ratio: 7.292735e-02	ci left: 6.430931e-03	ci right 6.919938e-03	k: 2869	n:430000
TBC1D16   430000 perm   157 sec   (2737 perm/sec)   p_kst 6.672093e-03   p_cons 2.660000e-02   p_joint 1.669767e-03

Joint ci ratio: 1.443721e-01	ci left: 1.551947e-03	ci right 1.795599e-03	k: 735	n:440000
Cons ci ratio: 3.574431e-02	ci left: 2.613103e-02	ci right 2.708430e-02	k: 11706	n:440000
KS ci ratio: 7.230166e-02	ci left: 6.396343e-03	ci right 6.878370e-03	k: 2919	n:440000
TBC1D16   440000 perm   162 sec   (2708 perm/sec)   p_kst 6.634091e-03   p_cons 2.660455e-02   p_joint 1.670455e-03

Joint ci ratio: 1.437889e-01	ci left: 1.530311e-03	ci right 1.769512e-03	k: 741	n:450000
Cons ci ratio: 3.531625e-02	ci left: 2.617806e-02	ci right 2.712138e-02	k: 11991	n:450000
KS ci ratio: 7.147409e-02	ci left: 6.402597e-03	ci right 6.879344e-03	k: 2987	n:450000
TBC1D16   450000 perm   168 sec   (2680 perm/sec)   p_kst 6.637778e-03   p_cons 2.664667e-02   p_joint 1.646667e-03

Joint ci ratio: 1.430213e-01	ci left: 1.513810e-03	ci right 1.749061e-03	k: 749	n:460000
Cons ci ratio: 3.495589e-02	ci left: 2.614552e-02	ci right 2.707785e-02	k: 12240	n:460000
KS ci ratio: 7.197802e-02	ci left: 6.175853e-03	ci right 6.639093e-03	k: 2946	n:460000
TBC1D16   460000 perm   173 sec   (2652 perm/sec)   p_kst 6.404348e-03   p_cons 2.660870e-02   p_joint 1.628261e-03

Joint ci ratio: 1.478402e-01	ci left: 1.383181e-03	ci right 1.606015e-03	k: 701	n:470000
Cons ci ratio: 3.457934e-02	ci left: 2.615449e-02	ci right 2.707690e-02	k: 12508	n:470000
KS ci ratio: 7.153246e-02	ci left: 6.121756e-03	ci right 6.577978e-03	k: 2983	n:470000
TBC1D16   470000 perm   179 sec   (2626 perm/sec)   p_kst 6.346809e-03   p_cons 2.661277e-02   p_joint 1.491489e-03

Joint ci ratio: 1.457774e-01	ci left: 1.394502e-03	ci right 1.615752e-03	k: 721	n:480000
Cons ci ratio: 3.424224e-02	ci left: 2.612181e-02	ci right 2.703391e-02	k: 12756	n:480000
KS ci ratio: 7.083594e-02	ci left: 6.114948e-03	ci right 6.566042e-03	k: 3042	n:480000
TBC1D16   480000 perm   185 sec   (2600 perm/sec)   p_kst 6.337500e-03   p_cons 2.657500e-02   p_joint 1.502083e-03

Joint ci ratio: 1.473202e-01	ci left: 1.336550e-03	ci right 1.551047e-03	k: 706	n:490000
Cons ci ratio: 3.389339e-02	ci left: 2.612290e-02	ci right 2.702557e-02	k: 13020	n:490000
KS ci ratio: 7.018214e-02	ci left: 6.104427e-03	ci right 6.550420e-03	k: 3099	n:490000
TBC1D16   490000 perm   190 sec   (2574 perm/sec)   p_kst 6.324490e-03   p_cons 2.657143e-02   p_joint 1.440816e-03

Joint ci ratio: 1.462899e-01	ci left: 1.329084e-03	ci right 1.540761e-03	k: 716	n:500000
Cons ci ratio: 3.352132e-02	ci left: 2.617557e-02	ci right 2.706993e-02	k: 13310	n:500000
KS ci ratio: 6.952397e-02	ci left: 6.098277e-03	ci right 6.539473e-03	k: 3158	n:500000
TBC1D16   500000 perm   196 sec   (2548 perm/sec)   p_kst 6.316000e-03   p_cons 2.662000e-02   p_joint 1.432000e-03

Joint ci ratio: 1.492390e-01	ci left: 1.250147e-03	ci right 1.453624e-03	k: 688	n:510000
Cons ci ratio: 3.320641e-02	ci left: 2.615620e-02	ci right 2.704135e-02	k: 13564	n:510000
KS ci ratio: 6.883017e-02	ci left: 6.102022e-03	ci right 6.538909e-03	k: 3222	n:510000
TBC1D16   510000 perm   202 sec   (2523 perm/sec)   p_kst 6.317647e-03   p_cons 2.659608e-02   p_joint 1.349020e-03

Joint ci ratio: 1.474308e-01	ci left: 1.257585e-03	ci right 1.459574e-03	k: 705	n:520000
Cons ci ratio: 3.288432e-02	ci left: 2.616242e-02	ci right 2.703902e-02	k: 13831	n:520000
KS ci ratio: 6.819851e-02	ci left: 6.098083e-03	ci right 6.530522e-03	k: 3282	n:520000
TBC1D16   520000 perm   208 sec   (2499 perm/sec)   p_kst 6.311538e-03   p_cons 2.659808e-02   p_joint 1.355769e-03

Joint ci ratio: 1.461938e-01	ci left: 1.255667e-03	ci right 1.455508e-03	k: 717	n:530000
Cons ci ratio: 3.255364e-02	ci left: 2.619652e-02	ci right 2.706527e-02	k: 14113	n:530000
KS ci ratio: 6.767567e-02	ci left: 6.077614e-03	ci right 6.505168e-03	k: 3333	n:530000
TBC1D16   530000 perm   214 sec   (2471 perm/sec)   p_kst 6.288679e-03   p_cons 2.662830e-02   p_joint 1.352830e-03

Joint ci ratio: 1.447890e-01	ci left: 1.257396e-03	ci right 1.455423e-03	k: 731	n:540000
Cons ci ratio: 3.222469e-02	ci left: 2.624226e-02	ci right 2.710357e-02	k: 14402	n:540000
KS ci ratio: 6.703525e-02	ci left: 6.081589e-03	ci right 6.505216e-03	k: 3397	n:540000
TBC1D16   540000 perm   221 sec   (2448 perm/sec)   p_kst 6.290741e-03   p_cons 2.667037e-02   p_joint 1.353704e-03

Joint ci ratio: 1.453887e-01	ci left: 1.224020e-03	ci right 1.417658e-03	k: 725	n:550000
Cons ci ratio: 3.188879e-02	ci left: 2.631344e-02	ci right 2.716792e-02	k: 14706	n:550000
KS ci ratio: 6.630675e-02	ci left: 6.105107e-03	ci right 6.525573e-03	k: 3472	n:550000
TBC1D16   550000 perm   227 sec   (2426 perm/sec)   p_kst 6.312727e-03   p_cons 2.673818e-02   p_joint 1.318182e-03

Joint ci ratio: 1.440067e-01	ci left: 1.226257e-03	ci right 1.418247e-03	k: 739	n:560000
Cons ci ratio: 3.157615e-02	ci left: 2.636085e-02	ci right 2.720834e-02	k: 14998	n:560000
KS ci ratio: 6.576023e-02	ci left: 6.097948e-03	ci right 6.514327e-03	k: 3530	n:560000
TBC1D16   560000 perm   233 sec   (2403 perm/sec)   p_kst 6.303571e-03   p_cons 2.678214e-02   p_joint 1.319643e-03

Joint ci ratio: 1.429484e-01	ci left: 1.223349e-03	ci right 1.413356e-03	k: 750	n:570000
Cons ci ratio: 3.129356e-02	ci left: 2.637183e-02	ci right 2.721194e-02	k: 15270	n:570000
KS ci ratio: 6.529110e-02	ci left: 6.078972e-03	ci right 6.490983e-03	k: 3581	n:570000
TBC1D16   570000 perm   239 sec   (2382 perm/sec)   p_kst 6.282456e-03   p_cons 2.678947e-02   p_joint 1.315789e-03

Joint ci ratio: 1.419132e-01	ci left: 1.220547e-03	ci right 1.408629e-03	k: 761	n:580000
Cons ci ratio: 3.102868e-02	ci left: 2.636534e-02	ci right 2.719801e-02	k: 15532	n:580000
KS ci ratio: 6.482289e-02	ci left: 6.062357e-03	ci right 6.470184e-03	k: 3633	n:580000
TBC1D16   580000 perm   246 sec   (2360 perm/sec)   p_kst 6.263793e-03   p_cons 2.677931e-02   p_joint 1.312069e-03

Joint ci ratio: 1.326497e-01	ci left: 1.379911e-03	ci right 1.577578e-03	k: 871	n:590000
Cons ci ratio: 2.941998e-02	ci left: 2.878195e-02	ci right 2.964302e-02	k: 17234	n:590000
KS ci ratio: 6.418089e-02	ci left: 6.081340e-03	ci right 6.486242e-03	k: 3706	n:590000
TBC1D16   590000 perm   252 sec   (2339 perm/sec)   p_kst 6.281356e-03   p_cons 2.921017e-02   p_joint 1.476271e-03

Joint ci ratio: 1.338089e-01	ci left: 1.332744e-03	ci right 1.525455e-03	k: 856	n:600000
Cons ci ratio: 2.917474e-02	ci left: 2.878370e-02	ci right 2.963752e-02	k: 17525	n:600000
KS ci ratio: 6.367637e-02	ci left: 6.076746e-03	ci right 6.478044e-03	k: 3765	n:600000
TBC1D16   600000 perm   259 sec   (2319 perm/sec)   p_kst 6.275000e-03   p_cons 2.920833e-02   p_joint 1.426667e-03

Joint ci ratio: 1.334988e-01	ci left: 1.317233e-03	ci right 1.507225e-03	k: 860	n:610000
Cons ci ratio: 2.896485e-02	ci left: 2.872844e-02	ci right 2.957440e-02	k: 17781	n:610000
KS ci ratio: 6.324182e-02	ci left: 6.061018e-03	ci right 6.458447e-03	k: 3817	n:610000
TBC1D16   610000 perm   265 sec   (2299 perm/sec)   p_kst 6.257377e-03   p_cons 2.914918e-02   p_joint 1.409836e-03

Joint ci ratio: 1.316007e-01	ci left: 1.334974e-03	ci right 1.524573e-03	k: 885	n:620000
Cons ci ratio: 2.873483e-02	ci left: 2.872304e-02	ci right 2.956201e-02	k: 18067	n:620000
KS ci ratio: 6.268578e-02	ci left: 6.071212e-03	ci right 6.465681e-03	k: 3885	n:620000
TBC1D16   620000 perm   272 sec   (2279 perm/sec)   p_kst 6.266129e-03   p_cons 2.914032e-02   p_joint 1.427419e-03

Joint ci ratio: 1.315279e-01	ci left: 1.315318e-03	ci right 1.502014e-03	k: 886	n:630000
Cons ci ratio: 2.850140e-02	ci left: 2.873518e-02	ci right 2.956757e-02	k: 18364	n:630000
KS ci ratio: 6.215206e-02	ci left: 6.079533e-03	ci right 6.471059e-03	k: 3952	n:630000
TBC1D16   630000 perm   279 sec   (2260 perm/sec)   p_kst 6.273016e-03   p_cons 2.914921e-02   p_joint 1.406349e-03

Joint ci ratio: 1.368045e-01	ci left: 1.193586e-03	ci right 1.370353e-03	k: 819	n:640000
Cons ci ratio: 2.828840e-02	ci left: 2.871748e-02	ci right 2.954304e-02	k: 18642	n:640000
KS ci ratio: 6.162403e-02	ci left: 6.089147e-03	ci right 6.477842e-03	k: 4020	n:640000
TBC1D16   640000 perm   286 sec   (2240 perm/sec)   p_kst 6.281250e-03   p_cons 2.912813e-02   p_joint 1.279688e-03

Joint ci ratio: 1.359782e-01	ci left: 1.190082e-03	ci right 1.365180e-03	k: 829	n:650000
Cons ci ratio: 2.807248e-02	ci left: 2.871562e-02	ci right 2.953473e-02	k: 18930	n:650000
KS ci ratio: 6.126018e-02	ci left: 6.068178e-03	ci right 6.453166e-03	k: 4068	n:650000
TBC1D16   650000 perm   293 sec   (2221 perm/sec)   p_kst 6.258462e-03   p_cons 2.912308e-02   p_joint 1.275385e-03

Joint ci ratio: 1.350862e-01	ci left: 1.188152e-03	ci right 1.361727e-03	k: 840	n:660000
Cons ci ratio: 2.784352e-02	ci left: 2.874997e-02	ci right 2.956326e-02	k: 19242	n:660000
KS ci ratio: 6.073222e-02	ci left: 6.082172e-03	ci right 6.464605e-03	k: 4139	n:660000
TBC1D16   660000 perm   300 sec   (2202 perm/sec)   p_kst 6.271212e-03   p_cons 2.915455e-02   p_joint 1.272727e-03

Joint ci ratio: 1.338971e-01	ci left: 1.192054e-03	ci right 1.364544e-03	k: 855	n:670000
Cons ci ratio: 2.764629e-02	ci left: 2.872994e-02	ci right 2.953682e-02	k: 19518	n:670000
KS ci ratio: 6.018174e-02	ci left: 6.103113e-03	ci right 6.483264e-03	k: 4215	n:670000
TBC1D16   670000 perm   307 sec   (2182 perm/sec)   p_kst 6.291045e-03   p_cons 2.913134e-02   p_joint 1.276119e-03

Joint ci ratio: 1.045462e-01	ci left: 1.955344e-03	ci right 2.172462e-03	k: 1402	n:680000
Cons ci ratio: 2.744535e-02	ci left: 2.872660e-02	ci right 2.952742e-02	k: 19805	n:680000
KS ci ratio: 5.968795e-02	ci left: 6.114761e-03	ci right 6.492404e-03	k: 4285	n:680000
TBC1D16   680000 perm   314 sec   (2164 perm/sec)   p_kst 6.301471e-03   p_cons 2.912500e-02   p_joint 2.061765e-03

Joint ci ratio: 1.066240e-01	ci left: 1.850806e-03	ci right 2.060657e-03	k: 1348	n:690000
Cons ci ratio: 2.724802e-02	ci left: 2.872480e-02	ci right 2.951973e-02	k: 20093	n:690000
KS ci ratio: 5.924720e-02	ci left: 6.117516e-03	ci right 6.492444e-03	k: 4349	n:690000
TBC1D16   690000 perm   321 sec   (2147 perm/sec)   p_kst 6.302899e-03   p_cons 2.912029e-02   p_joint 1.953623e-03

Joint ci ratio: 1.109978e-01	ci left: 1.679828e-03	ci right 1.878617e-03	k: 1244	n:700000
Cons ci ratio: 2.705079e-02	ci left: 2.873160e-02	ci right 2.952087e-02	k: 20387	n:700000
KS ci ratio: 5.881607e-02	ci left: 6.120202e-03	ci right 6.492473e-03	k: 4413	n:700000
TBC1D16   700000 perm   329 sec   (2129 perm/sec)   p_kst 6.304286e-03   p_cons 2.912429e-02   p_joint 1.777143e-03

Joint ci ratio: 1.103354e-01	ci left: 1.676710e-03	ci right 1.873869e-03	k: 1259	n:710000
Cons ci ratio: 2.686313e-02	ci left: 2.872703e-02	ci right 2.951062e-02	k: 20673	n:710000
KS ci ratio: 5.845336e-02	ci left: 6.110330e-03	ci right 6.479631e-03	k: 4468	n:710000
TBC1D16   710000 perm   336 sec   (2112 perm/sec)   p_kst 6.292958e-03   p_cons 2.911690e-02   p_joint 1.773239e-03

Joint ci ratio: 1.097709e-01	ci left: 1.670981e-03	ci right 1.866396e-03	k: 1272	n:720000
Cons ci ratio: 2.670559e-02	ci left: 2.866741e-02	ci right 2.944472e-02	k: 20919	n:720000
KS ci ratio: 5.809727e-02	ci left: 6.100740e-03	ci right 6.467139e-03	k: 4523	n:720000
TBC1D16   720000 perm   344 sec   (2095 perm/sec)   p_kst 6.281944e-03   p_cons 2.905417e-02   p_joint 1.766667e-03

Joint ci ratio: 1.090453e-01	ci left: 1.670741e-03	ci right 1.864753e-03	k: 1289	n:730000
Cons ci ratio: 2.650889e-02	ci left: 2.869791e-02	ci right 2.947022e-02	k: 21230	n:730000
KS ci ratio: 5.772225e-02	ci left: 6.096819e-03	ci right 6.460540e-03	k: 4582	n:730000
TBC1D16   730000 perm   351 sec   (2077 perm/sec)   p_kst 6.276712e-03   p_cons 2.908219e-02   p_joint 1.765753e-03

Joint ci ratio: 1.089198e-01	ci left: 1.652106e-03	ci right 1.843720e-03	k: 1292	n:740000
Cons ci ratio: 2.632780e-02	ci left: 2.870343e-02	ci right 2.947054e-02	k: 21523	n:740000
KS ci ratio: 5.729853e-02	ci left: 6.105001e-03	ci right 6.466448e-03	k: 4650	n:740000
TBC1D16   740000 perm   359 sec   (2061 perm/sec)   p_kst 6.283784e-03   p_cons 2.908514e-02   p_joint 1.745946e-03

Joint ci ratio: 1.393055e-01	ci left: 9.811876e-04	ci right 1.129376e-03	k: 790	n:750000
Cons ci ratio: 2.997130e-02	ci left: 2.196568e-02	ci right 2.263535e-02	k: 16724	n:750000
KS ci ratio: 5.722054e-02	ci left: 6.040680e-03	ci right 6.397816e-03	k: 4663	n:750000
TBC1D16   750000 perm   367 sec   (2045 perm/sec)   p_kst 6.217333e-03   p_cons 2.229867e-02   p_joint 1.053333e-03

Joint ci ratio: 1.388678e-01	ci left: 9.746270e-04	ci right 1.121324e-03	k: 795	n:760000
Cons ci ratio: 2.979775e-02	ci left: 2.193262e-02	ci right 2.259734e-02	k: 16920	n:760000
KS ci ratio: 5.674739e-02	ci left: 6.062369e-03	ci right 6.417726e-03	k: 4741	n:760000
TBC1D16   760000 perm   374 sec   (2030 perm/sec)   p_kst 6.238158e-03   p_cons 2.226316e-02   p_joint 1.046053e-03

Joint ci ratio: 1.382616e-01	ci left: 9.707451e-04	ci right 1.116167e-03	k: 802	n:770000
Cons ci ratio: 2.960420e-02	ci left: 2.193395e-02	ci right 2.259432e-02	k: 17142	n:770000
KS ci ratio: 5.645695e-02	ci left: 6.046371e-03	ci right 6.398918e-03	k: 4790	n:770000
TBC1D16   770000 perm   382 sec   (2014 perm/sec)   p_kst 6.220779e-03   p_cons 2.226234e-02   p_joint 1.041558e-03

Joint ci ratio: 1.376631e-01	ci left: 9.669641e-04	ci right 1.111142e-03	k: 809	n:780000
Cons ci ratio: 2.941263e-02	ci left: 2.193781e-02	ci right 2.259395e-02	k: 17366	n:780000
KS ci ratio: 5.611844e-02	ci left: 6.042165e-03	ci right 6.392286e-03	k: 4848	n:780000
TBC1D16   780000 perm   390 sec   (1999 perm/sec)   p_kst 6.215385e-03   p_cons 2.226410e-02   p_joint 1.037179e-03

Joint ci ratio: 1.371565e-01	ci left: 9.620577e-04	ci right 1.104933e-03	k: 815	n:790000
Cons ci ratio: 2.922389e-02	ci left: 2.194284e-02	ci right 2.259485e-02	k: 17591	n:790000
KS ci ratio: 5.594102e-02	ci left: 6.004370e-03	ci right 6.351165e-03	k: 4879	n:790000
TBC1D16   790000 perm   398 sec   (1984 perm/sec)   p_kst 6.175949e-03   p_cons 2.226709e-02   p_joint 1.031646e-03

Joint ci ratio: 1.360766e-01	ci left: 9.657267e-04	ci right 1.107926e-03	k: 828	n:800000
Cons ci ratio: 2.904290e-02	ci left: 2.194155e-02	ci right 2.258942e-02	k: 17811	n:800000
KS ci ratio: 5.562865e-02	ci left: 5.997106e-03	ci right 6.341485e-03	k: 4934	n:800000
TBC1D16   800000 perm   406 sec   (1969 perm/sec)   p_kst 6.167500e-03   p_cons 2.226375e-02   p_joint 1.035000e-03

Joint ci ratio: 1.355060e-01	ci left: 9.621525e-04	ci right 1.103183e-03	k: 835	n:810000
Cons ci ratio: 2.885787e-02	ci left: 2.195134e-02	ci right 2.259529e-02	k: 18040	n:810000
KS ci ratio: 5.527690e-02	ci left: 5.999767e-03	ci right 6.342051e-03	k: 4997	n:810000
TBC1D16   810000 perm   415 sec   (1954 perm/sec)   p_kst 6.169136e-03   p_cons 2.227160e-02   p_joint 1.030864e-03

Joint ci ratio: 1.362429e-01	ci left: 9.398156e-04	ci right 1.078382e-03	k: 826	n:820000
Cons ci ratio: 2.868356e-02	ci left: 2.195000e-02	ci right 2.258997e-02	k: 18260	n:820000
KS ci ratio: 5.500834e-02	ci left: 5.985530e-03	ci right 6.325290e-03	k: 5046	n:820000
TBC1D16   820000 perm   423 sec   (1940 perm/sec)   p_kst 6.153659e-03   p_cons 2.226829e-02   p_joint 1.007317e-03

Joint ci ratio: 1.402925e-01	ci left: 8.738224e-04	ci right 1.006809e-03	k: 779	n:830000
Cons ci ratio: 2.850606e-02	ci left: 2.195828e-02	ci right 2.259446e-02	k: 18488	n:830000
KS ci ratio: 5.472744e-02	ci left: 5.975205e-03	ci right 6.312593e-03	k: 5098	n:830000
TBC1D16   830000 perm   431 sec   (1925 perm/sec)   p_kst 6.142169e-03   p_cons 2.227470e-02   p_joint 9.385542e-04

Joint ci ratio: 1.422226e-01	ci left: 8.393021e-04	ci right 9.689412e-04	k: 758	n:840000
Cons ci ratio: 2.835507e-02	ci left: 2.193091e-02	ci right 2.256287e-02	k: 18686	n:840000
KS ci ratio: 5.446145e-02	ci left: 5.962782e-03	ci right 6.297780e-03	k: 5148	n:840000
TBC1D16   840000 perm   439 sec   (1912 perm/sec)   p_kst 6.128571e-03   p_cons 2.224524e-02   p_joint 9.023810e-04

Joint ci ratio: 1.424113e-01	ci left: 8.271585e-04	ci right 9.551057e-04	k: 756	n:850000
Cons ci ratio: 2.819424e-02	ci left: 2.192288e-02	ci right 2.255097e-02	k: 18900	n:850000
KS ci ratio: 5.410514e-02	ci left: 5.971547e-03	ci right 6.304774e-03	k: 5216	n:850000
TBC1D16   850000 perm   448 sec   (1898 perm/sec)   p_kst 6.136471e-03   p_cons 2.223529e-02   p_joint 8.894118e-04

Joint ci ratio: 1.417575e-01	ci left: 8.253905e-04	ci right 9.524286e-04	k: 763	n:860000
Cons ci ratio: 2.803386e-02	ci left: 2.191851e-02	ci right 2.254285e-02	k: 19117	n:860000
KS ci ratio: 5.374550e-02	ci left: 5.982409e-03	ci right 6.313954e-03	k: 5286	n:860000
TBC1D16   860000 perm   456 sec   (1884 perm/sec)   p_kst 6.146512e-03   p_cons 2.222907e-02   p_joint 8.872093e-04

Joint ci ratio: 1.513844e-01	ci left: 7.118121e-04	ci right 8.294839e-04	k: 669	n:870000
Cons ci ratio: 2.785704e-02	ci left: 2.194394e-02	ci right 2.256500e-02	k: 19360	n:870000
KS ci ratio: 5.367086e-02	ci left: 5.930651e-03	ci right 6.258857e-03	k: 5301	n:870000
TBC1D16   870000 perm   465 sec   (1870 perm/sec)   p_kst 6.093103e-03   p_cons 2.225287e-02   p_joint 7.689655e-04

Joint ci ratio: 1.175845e-01	ci left: 1.187182e-03	ci right 1.336587e-03	k: 1109	n:880000
Cons ci ratio: 2.769725e-02	ci left: 2.194735e-02	ci right 2.256489e-02	k: 19584	n:880000
KS ci ratio: 5.134230e-02	ci left: 6.411687e-03	ci right 6.750664e-03	k: 5790	n:880000
TBC1D16   880000 perm   474 sec   (1857 perm/sec)   p_kst 6.579545e-03   p_cons 2.225455e-02   p_joint 1.260227e-03

Joint ci ratio: 1.006924e-01	ci left: 1.614381e-03	ci right 1.786641e-03	k: 1512	n:890000
Cons ci ratio: 2.754303e-02	ci left: 2.194624e-02	ci right 2.256025e-02	k: 19804	n:890000
KS ci ratio: 5.097341e-02	ci left: 6.432822e-03	ci right 6.770401e-03	k: 5874	n:890000
TBC1D16   890000 perm   483 sec   (1844 perm/sec)   p_kst 6.600000e-03   p_cons 2.225169e-02   p_joint 1.698876e-03

Joint ci ratio: 1.016398e-01	ci left: 1.566118e-03	ci right 1.734893e-03	k: 1484	n:900000
Cons ci ratio: 2.740115e-02	ci left: 2.192970e-02	ci right 2.254004e-02	k: 20010	n:900000
KS ci ratio: 5.070237e-02	ci left: 6.430456e-03	ci right 6.766065e-03	k: 5937	n:900000
TBC1D16   900000 perm   491 sec   (1832 perm/sec)   p_kst 6.596667e-03   p_cons 2.223333e-02   p_joint 1.648889e-03

Joint ci ratio: 1.028977e-01	ci left: 1.510357e-03	ci right 1.675259e-03	k: 1448	n:910000
Cons ci ratio: 2.727593e-02	ci left: 2.189062e-02	ci right 2.249704e-02	k: 20195	n:910000
KS ci ratio: 5.049494e-02	ci left: 6.412955e-03	ci right 6.746241e-03	k: 5986	n:910000
TBC1D16   910000 perm   500 sec   (1819 perm/sec)   p_kst 6.578022e-03   p_cons 2.219231e-02   p_joint 1.591209e-03

Joint ci ratio: 1.024393e-01	ci left: 1.507707e-03	ci right 1.671543e-03	k: 1461	n:920000
Cons ci ratio: 2.711978e-02	ci left: 2.190422e-02	ci right 2.250749e-02	k: 20428	n:920000
KS ci ratio: 5.022306e-02	ci left: 6.413012e-03	ci right 6.744454e-03	k: 6051	n:920000
TBC1D16   920000 perm   509 sec   (1806 perm/sec)   p_kst 6.577174e-03   p_cons 2.220435e-02   p_joint 1.588043e-03

Joint ci ratio: 1.021955e-01	ci left: 1.498829e-03	ci right 1.661289e-03	k: 1468	n:930000
Cons ci ratio: 2.699233e-02	ci left: 2.187588e-02	ci right 2.247549e-02	k: 20622	n:930000
KS ci ratio: 4.995142e-02	ci left: 6.414134e-03	ci right 6.743790e-03	k: 6117	n:930000
TBC1D16   930000 perm   518 sec   (1794 perm/sec)   p_kst 6.577419e-03   p_cons 2.217419e-02   p_joint 1.578495e-03

Joint ci ratio: 1.026170e-01	ci left: 1.470444e-03	ci right 1.630525e-03	k: 1456	n:940000
Cons ci ratio: 2.684360e-02	ci left: 2.188513e-02	ci right 2.248165e-02	k: 20851	n:940000
KS ci ratio: 4.969224e-02	ci left: 6.413135e-03	ci right 6.740980e-03	k: 6181	n:940000
TBC1D16   940000 perm   528 sec   (1781 perm/sec)   p_kst 6.575532e-03   p_cons 2.218191e-02   p_joint 1.548936e-03

Joint ci ratio: 1.029011e-01	ci left: 1.446760e-03	ci right 1.604725e-03	k: 1448	n:950000
Cons ci ratio: 2.669860e-02	ci left: 2.189211e-02	ci right 2.248554e-02	k: 21078	n:950000
KS ci ratio: 4.950090e-02	ci left: 6.395527e-03	ci right 6.721177e-03	k: 6229	n:950000
TBC1D16   950000 perm   537 sec   (1769 perm/sec)   p_kst 6.556842e-03   p_cons 2.218737e-02   p_joint 1.524211e-03

Joint ci ratio: 1.028664e-01	ci left: 1.432704e-03	ci right 1.589078e-03	k: 1449	n:960000
Cons ci ratio: 2.654891e-02	ci left: 2.191034e-02	ci right 2.250088e-02	k: 21316	n:960000
KS ci ratio: 4.919751e-02	ci left: 6.408126e-03	ci right 6.732362e-03	k: 6306	n:960000
TBC1D16   960000 perm   546 sec   (1757 perm/sec)   p_kst 6.568750e-03   p_cons 2.220417e-02   p_joint 1.509375e-03

Joint ci ratio: 1.056395e-01	ci left: 1.342627e-03	ci right 1.493365e-03	k: 1374	n:970000
Cons ci ratio: 2.642491e-02	ci left: 2.189030e-02	ci right 2.247751e-02	k: 21517	n:970000
KS ci ratio: 4.894595e-02	ci left: 6.408251e-03	ci right 6.730788e-03	k: 6371	n:970000
TBC1D16   970000 perm   556 sec   (1746 perm/sec)   p_kst 6.568041e-03   p_cons 2.218247e-02   p_joint 1.416495e-03

Joint ci ratio: 1.052577e-01	ci left: 1.338862e-03	ci right 1.488600e-03	k: 1384	n:980000
Cons ci ratio: 2.629088e-02	ci left: 2.188994e-02	ci right 2.247411e-02	k: 21737	n:980000
KS ci ratio: 4.869441e-02	ci left: 6.409386e-03	ci right 6.730276e-03	k: 6437	n:980000
TBC1D16   980000 perm   565 sec   (1735 perm/sec)   p_kst 6.568367e-03   p_cons 2.218061e-02   p_joint 1.412245e-03

Joint ci ratio: 1.046548e-01	ci left: 1.341075e-03	ci right 1.490149e-03	k: 1400	n:990000
Cons ci ratio: 2.614852e-02	ci left: 2.190666e-02	ci right 2.248806e-02	k: 21974	n:990000
KS ci ratio: 4.848424e-02	ci left: 6.400522e-03	ci right 6.719547e-03	k: 6493	n:990000
TBC1D16   990000 perm   574 sec   (1723 perm/sec)   p_kst 6.558586e-03   p_cons 2.219596e-02   p_joint 1.414141e-03

Joint ci ratio: 1.040990e-01	ci left: 1.342273e-03	ci right 1.490639e-03	k: 1415	n:1000000
Cons ci ratio: 2.601683e-02	ci left: 2.190914e-02	ci right 2.248764e-02	k: 22197	n:1000000
KS ci ratio: 4.823602e-02	ci left: 6.402707e-03	ci right 6.720161e-03	k: 6560	n:1000000
TBC1D16   1000000 perm   584 sec   (1712 perm/sec)   p_kst 6.560000e-03   p_cons 2.219700e-02   p_joint 1.415000e-03

Joint ci ratio: 1.033712e-01	ci left: 1.348272e-03	ci right 1.496196e-03	k: 1435	n:1010000
Cons ci ratio: 2.589125e-02	ci left: 2.190469e-02	ci right 2.248024e-02	k: 22413	n:1010000
KS ci ratio: 4.797335e-02	ci left: 6.409744e-03	ci right 6.725769e-03	k: 6632	n:1010000
TBC1D16   1010000 perm   594 sec   (1701 perm/sec)   p_kst 6.566337e-03   p_cons 2.219109e-02   p_joint 1.420792e-03

Joint ci ratio: 1.028000e-01	ci left: 1.350335e-03	ci right 1.497618e-03	k: 1451	n:1020000
Cons ci ratio: 2.575641e-02	ci left: 2.191884e-02	ci right 2.249172e-02	k: 22648	n:1020000
KS ci ratio: 4.772927e-02	ci left: 6.412773e-03	ci right 6.727294e-03	k: 6700	n:1020000
TBC1D16   1020000 perm   604 sec   (1690 perm/sec)   p_kst 6.568627e-03   p_cons 2.220392e-02   p_joint 1.422549e-03

Joint ci ratio: 1.021685e-01	ci left: 1.354253e-03	ci right 1.501001e-03	k: 1469	n:1030000
Cons ci ratio: 2.562308e-02	ci left: 2.193369e-02	ci right 2.250395e-02	k: 22884	n:1030000
KS ci ratio: 4.751361e-02	ci left: 6.409031e-03	ci right 6.721909e-03	k: 6761	n:1030000
TBC1D16   1030000 perm   613 sec   (1679 perm/sec)   p_kst 6.564078e-03   p_cons 2.221748e-02   p_joint 1.426214e-03

Joint ci ratio: 1.062655e-01	ci left: 1.237277e-03	ci right 1.377062e-03	k: 1358	n:1040000
Cons ci ratio: 2.550421e-02	ci left: 2.192725e-02	ci right 2.249465e-02	k: 23098	n:1040000
KS ci ratio: 4.729387e-02	ci left: 6.407264e-03	ci right 6.718570e-03	k: 6824	n:1040000
TBC1D16   1040000 perm   623 sec   (1668 perm/sec)   p_kst 6.561538e-03   p_cons 2.220962e-02   p_joint 1.305769e-03

Joint ci ratio: 1.060320e-01	ci left: 1.231056e-03	ci right 1.369813e-03	k: 1364	n:1050000
Cons ci ratio: 2.538810e-02	ci left: 2.191903e-02	ci right 2.248361e-02	k: 23310	n:1050000
KS ci ratio: 4.708059e-02	ci left: 6.404593e-03	ci right 6.714329e-03	k: 6886	n:1050000
TBC1D16   1050000 perm   633 sec   (1658 perm/sec)   p_kst 6.558095e-03   p_cons 2.220000e-02   p_joint 1.299048e-03

Joint ci ratio: 1.065814e-01	ci left: 1.206585e-03	ci right 1.343333e-03	k: 1350	n:1060000
Cons ci ratio: 2.527081e-02	ci left: 2.191567e-02	ci right 2.247751e-02	k: 23527	n:1060000
KS ci ratio: 4.684642e-02	ci left: 6.408503e-03	ci right 6.716844e-03	k: 6955	n:1060000
TBC1D16   1060000 perm   644 sec   (1647 perm/sec)   p_kst 6.561321e-03   p_cons 2.219528e-02   p_joint 1.273585e-03

Joint ci ratio: 1.059556e-01	ci left: 1.209865e-03	ci right 1.346129e-03	k: 1366	n:1070000
Cons ci ratio: 2.516164e-02	ci left: 2.190123e-02	ci right 2.246024e-02	k: 23732	n:1070000
KS ci ratio: 4.659235e-02	ci left: 6.418810e-03	ci right 6.725927e-03	k: 7031	n:1070000
TBC1D16   1070000 perm   654 sec   (1637 perm/sec)   p_kst 6.571028e-03   p_cons 2.217944e-02   p_joint 1.276636e-03

Joint ci ratio: 1.056087e-01	ci left: 1.206775e-03	ci right 1.342219e-03	k: 1375	n:1080000
Cons ci ratio: 2.504531e-02	ci left: 2.190179e-02	ci right 2.245819e-02	k: 23953	n:1080000
KS ci ratio: 4.640814e-02	ci left: 6.410624e-03	ci right 6.716105e-03	k: 7087	n:1080000
TBC1D16   1080000 perm   664 sec   (1627 perm/sec)   p_kst 6.562037e-03   p_cons 2.217870e-02   p_joint 1.273148e-03

Joint ci ratio: 1.054943e-01	ci left: 1.198383e-03	ci right 1.332730e-03	k: 1378	n:1090000
Cons ci ratio: 2.492320e-02	ci left: 2.191510e-02	ci right 2.246909e-02	k: 24188	n:1090000
KS ci ratio: 4.624891e-02	ci left: 6.396244e-03	ci right 6.699965e-03	k: 7136	n:1090000
TBC1D16   1090000 perm   674 sec   (1617 perm/sec)   p_kst 6.546789e-03   p_cons 2.219083e-02   p_joint 1.264220e-03

Joint ci ratio: 1.051898e-01	ci left: 1.194570e-03	ci right 1.328079e-03	k: 1386	n:1100000
Cons ci ratio: 2.481169e-02	ci left: 2.191282e-02	ci right 2.246424e-02	k: 24406	n:1100000
KS ci ratio: 4.601403e-02	ci left: 6.403695e-03	ci right 6.706185e-03	k: 7209	n:1100000
TBC1D16   1100000 perm   684 sec   (1607 perm/sec)   p_kst 6.553636e-03   p_cons 2.218727e-02   p_joint 1.260000e-03

Joint ci ratio: 1.044763e-01	ci left: 1.200476e-03	ci right 1.333680e-03	k: 1405	n:1110000
Cons ci ratio: 2.469295e-02	ci left: 2.192581e-02	ci right 2.247488e-02	k: 24641	n:1110000
KS ci ratio: 4.577004e-02	ci left: 6.414578e-03	ci right 6.715933e-03	k: 7286	n:1110000
TBC1D16   1110000 perm   695 sec   (1597 perm/sec)   p_kst 6.563964e-03   p_cons 2.219910e-02   p_joint 1.265766e-03

Joint ci ratio: 1.041437e-01	ci left: 1.197584e-03	ci right 1.330017e-03	k: 1414	n:1120000
Cons ci ratio: 2.459410e-02	ci left: 2.190663e-02	ci right 2.245299e-02	k: 24840	n:1120000
KS ci ratio: 4.557663e-02	ci left: 6.412030e-03	ci right 6.711959e-03	k: 7348	n:1120000
TBC1D16   1120000 perm   705 sec   (1588 perm/sec)   p_kst 6.560714e-03   p_cons 2.217857e-02   p_joint 1.262500e-03

Joint ci ratio: 7.814109e-02	ci left: 2.135274e-03	ci right 2.309771e-03	k: 2510	n:1130000
Cons ci ratio: 2.332040e-02	ci left: 2.411015e-02	ci right 2.467991e-02	k: 27565	n:1130000
KS ci ratio: 4.538566e-02	ci left: 6.409529e-03	ci right 6.708053e-03	k: 7410	n:1130000
TBC1D16   1130000 perm   716 sec   (1578 perm/sec)   p_kst 6.557522e-03   p_cons 2.439381e-02   p_joint 2.221239e-03

Outputting figure to mutsig2_images.part000000000171/TBC1D16.4_2348_1130000_0.0065575_0.024394_0.0022212.png
                gene_name: TBC1D16
               theta_stop: 0.078 
                    nperm: 1130000 
                     p_ks: 0.0066 
        ci_ks_bounds_left: 0.0064 
       ci_ks_bounds_right: 0.0067 
                   p_cons: 0.024 
      ci_cons_bounds_left: 0.024 
     ci_cons_bounds_right: 0.025 
                  p_joint: 0.0022 
     ci_joint_bounds_left: 0.0021 
    ci_joint_bounds_right: 0.0023 

Current progress: 47 percent done.
TBC1D23
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.832774e-02	ci left: 6.475005e-01	ci right 6.662080e-01	k: 6569	n:10000
Cons ci ratio: 7.338209e-02	ci left: 2.137878e-01	ci right 2.301745e-01	k: 2219	n:10000
KS ci ratio: 2.904114e-02	ci left: 6.361335e-01	ci right 6.549816e-01	k: 6456	n:10000
TBC1D23   10000 perm   2 sec   (5854 perm/sec)   p_kst 6.456000e-01   p_cons 2.219000e-01   p_joint 6.569000e-01

Outputting figure to mutsig2_images.part000000000171/TBC1D23.4_2127_10000_0.6456_0.2219_0.6569.png
                gene_name: TBC1D23
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 49 percent done.
TBC1D25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.208445e-01	ci left: 8.941891e-02	ci right 1.010181e-01	k: 951	n:10000
Cons ci ratio: 1.592875e-01	ci left: 5.253552e-02	ci right 6.172460e-02	k: 570	n:10000
KS ci ratio: 1.209850e-01	ci left: 8.922438e-02	ci right 1.008128e-01	k: 949	n:10000
TBC1D25   10000 perm   2 sec   (5678 perm/sec)   p_kst 9.490000e-02   p_cons 5.700000e-02   p_joint 9.510000e-02

Joint ci ratio: 8.590112e-02	ci left: 9.023491e-02	ci right 9.838348e-02	k: 1885	n:20000
Cons ci ratio: 1.112983e-01	ci left: 5.514077e-02	ci right 6.168835e-02	k: 1167	n:20000
KS ci ratio: 8.461913e-02	ci left: 9.278496e-02	ci right 1.010327e-01	k: 1937	n:20000
TBC1D25   20000 perm   4 sec   (5089 perm/sec)   p_kst 9.685000e-02   p_cons 5.835000e-02   p_joint 9.425000e-02

Joint ci ratio: 6.525620e-02	ci left: 1.038521e-01	ci right 1.108908e-01	k: 3220	n:30000
Cons ci ratio: 8.534532e-02	ci left: 6.288924e-02	ci right 6.852856e-02	k: 1970	n:30000
KS ci ratio: 6.955629e-02	ci left: 9.239370e-02	ci right 9.908482e-02	k: 2871	n:30000
TBC1D25   30000 perm   6 sec   (4863 perm/sec)   p_kst 9.570000e-02   p_cons 6.566667e-02   p_joint 1.073333e-01

Outputting figure to mutsig2_images.part000000000171/TBC1D25.4_2091_30000_0.0957_0.065667_0.10733.png
                gene_name: TBC1D25
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.096 
        ci_ks_bounds_left: 0.092 
       ci_ks_bounds_right: 0.099 
                   p_cons: 0.066 
      ci_cons_bounds_left: 0.063 
     ci_cons_bounds_right: 0.069 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 51 percent done.
TAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.958674e-02	ci left: 3.749500e-01	ci right 3.941173e-01	k: 3845	n:10000
Cons ci ratio: 1.982091e-02	ci left: 7.883719e-01	ci right 8.042551e-01	k: 7964	n:10000
KS ci ratio: 6.816792e-02	ci left: 2.399555e-01	ci right 2.569912e-01	k: 2484	n:10000
TAP1   10000 perm   2 sec   (5838 perm/sec)   p_kst 2.484000e-01   p_cons 7.964000e-01   p_joint 3.845000e-01

Outputting figure to mutsig2_images.part000000000171/TAP1.3_2471_10000_0.2484_0.7964_0.3845.png
                gene_name: TAP1
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 53 percent done.
TARS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.844278e-02	ci left: 2.384731e-01	ci right 2.554745e-01	k: 2469	n:10000
Cons ci ratio: 6.618316e-02	ci left: 2.510282e-01	ci right 2.683120e-01	k: 2596	n:10000
KS ci ratio: 6.994737e-02	ci left: 2.305695e-01	ci right 2.473828e-01	k: 2389	n:10000
TARS   10000 perm   2 sec   (5952 perm/sec)   p_kst 2.389000e-01   p_cons 2.596000e-01   p_joint 2.469000e-01

Outputting figure to mutsig2_images.part000000000171/TARS.3_2248_10000_0.2389_0.2596_0.2469.png
                gene_name: TARS
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 55 percent done.
TAS1R1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.491338e-02	ci left: 4.225613e-01	ci right 4.420781e-01	k: 4323	n:10000
Cons ci ratio: 1.144619e-02	ci left: 9.160549e-01	ci right 9.266981e-01	k: 9215	n:10000
KS ci ratio: 8.710826e-02	ci left: 1.610145e-01	ci right 1.757792e-01	k: 1683	n:10000
TAS1R1   10000 perm   2 sec   (5694 perm/sec)   p_kst 1.683000e-01   p_cons 9.215000e-01   p_joint 4.323000e-01

Outputting figure to mutsig2_images.part000000000171/TAS1R1.3_2550_10000_0.1683_0.9215_0.4323.png
                gene_name: TAS1R1
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 57 percent done.
TAS1R3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.969557e-01	ci left: 3.433772e-02	ci right 4.193438e-02	k: 380	n:10000
Cons ci ratio: 2.928552e-01	ci left: 1.502126e-02	ci right 2.026513e-02	k: 175	n:10000
KS ci ratio: 1.074258e-01	ci left: 1.111530e-01	ci right 1.238707e-01	k: 1174	n:10000
TAS1R3   10000 perm   2 sec   (5822 perm/sec)   p_kst 1.174000e-01   p_cons 1.750000e-02   p_joint 3.800000e-02

Joint ci ratio: 1.925569e-01	ci left: 1.834288e-02	ci right 2.229831e-02	k: 405	n:20000
Cons ci ratio: 2.117242e-01	ci left: 1.506432e-02	ci right 1.867810e-02	k: 336	n:20000
KS ci ratio: 7.413374e-02	ci left: 1.180846e-01	ci right 1.272254e-01	k: 2452	n:20000
TAS1R3   20000 perm   4 sec   (5184 perm/sec)   p_kst 1.226000e-01   p_cons 1.680000e-02   p_joint 2.025000e-02

Joint ci ratio: 1.961824e-01	ci left: 1.184400e-02	ci right 1.445155e-02	k: 393	n:30000
Cons ci ratio: 1.731349e-01	ci left: 1.534403e-02	ci right 1.828395e-02	k: 503	n:30000
KS ci ratio: 6.048816e-02	ci left: 1.190731e-01	ci right 1.265334e-01	k: 3683	n:30000
TAS1R3   30000 perm   6 sec   (4929 perm/sec)   p_kst 1.227667e-01   p_cons 1.676667e-02   p_joint 1.310000e-02

Joint ci ratio: 1.051138e-01	ci left: 3.183116e-02	ci right 3.538697e-02	k: 1343	n:40000
Cons ci ratio: 1.415959e-01	ci left: 1.746740e-02	ci right 2.015311e-02	k: 751	n:40000
KS ci ratio: 5.273383e-02	ci left: 1.181651e-01	ci right 1.245900e-01	k: 4854	n:40000
TAS1R3   40000 perm   8 sec   (4758 perm/sec)   p_kst 1.213500e-01   p_cons 1.877500e-02   p_joint 3.357500e-02

Joint ci ratio: 1.567065e-01	ci left: 1.139073e-02	ci right 1.334650e-02	k: 617	n:50000
Cons ci ratio: 1.327508e-01	ci left: 1.600109e-02	ci right 1.829546e-02	k: 856	n:50000
KS ci ratio: 4.691514e-02	ci left: 1.196382e-01	ci right 1.254057e-01	k: 6125	n:50000
TAS1R3   50000 perm   11 sec   (4630 perm/sec)   p_kst 1.225000e-01   p_cons 1.712000e-02   p_joint 1.234000e-02

Joint ci ratio: 1.449042e-01	ci left: 1.117622e-02	ci right 1.293811e-02	k: 722	n:60000
Cons ci ratio: 1.202599e-01	ci left: 1.635263e-02	ci right 1.846108e-02	k: 1043	n:60000
KS ci ratio: 4.291472e-02	ci left: 1.194573e-01	ci right 1.247127e-01	k: 7324	n:60000
TAS1R3   60000 perm   13 sec   (4523 perm/sec)   p_kst 1.220667e-01   p_cons 1.738333e-02   p_joint 1.203333e-02

Joint ci ratio: 1.450305e-01	ci left: 9.579037e-03	ci right 1.109054e-02	k: 722	n:70000
Cons ci ratio: 1.117131e-01	ci left: 1.631922e-02	ci right 1.826395e-02	k: 1209	n:70000
KS ci ratio: 3.973090e-02	ci left: 1.196549e-01	ci right 1.245194e-01	k: 8545	n:70000
TAS1R3   70000 perm   16 sec   (4423 perm/sec)   p_kst 1.220714e-01   p_cons 1.727143e-02   p_joint 1.031429e-02

Joint ci ratio: 9.885870e-02	ci left: 1.832128e-02	ci right 2.023881e-02	k: 1541	n:80000
Cons ci ratio: 9.955214e-02	ci left: 1.806517e-02	ci right 1.996994e-02	k: 1520	n:80000
KS ci ratio: 3.715157e-02	ci left: 1.198883e-01	ci right 1.244391e-01	k: 9772	n:80000
TAS1R3   80000 perm   18 sec   (4336 perm/sec)   p_kst 1.221500e-01   p_cons 1.900000e-02   p_joint 1.926250e-02

Outputting figure to mutsig2_images.part000000000171/TAS1R3.3_2582_80000_0.12215_0.019_0.019262.png
                gene_name: TAS1R3
               theta_stop: 0.100 
                    nperm: 80000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.019 
      ci_cons_bounds_left: 0.018 
     ci_cons_bounds_right: 0.020 
                  p_joint: 0.019 
     ci_joint_bounds_left: 0.018 
    ci_joint_bounds_right: 0.020 

Current progress: 60 percent done.
TAS2R10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.733853e-02	ci left: 8.290021e-01	ci right 8.436014e-01	k: 8364	n:10000
KS ci ratio: 2.407510e-02	ci left: 7.172444e-01	ci right 7.348238e-01	k: 7261	n:10000
TAS2R10   10000 perm   2 sec   (6559 perm/sec)   p_kst 7.261000e-01   p_cons 8.364000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000171/TAS2R10.3_928_10000_0.7261_0.8364_1.png
                gene_name: TAS2R10
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
TAS2R40
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.474582e-01	ci left: 6.111415e-02	ci right 7.094050e-02	k: 659	n:10000
Cons ci ratio: 6.712391e-03	ci left: 9.681537e-01	ci right 9.747678e-01	k: 9716	n:10000
KS ci ratio: 3.254388e-01	ci left: 1.197339e-02	ci right 1.671572e-02	k: 142	n:10000
TAS2R40   10000 perm   2 sec   (6440 perm/sec)   p_kst 1.420000e-02   p_cons 9.716000e-01   p_joint 6.590000e-02

Joint ci ratio: 7.838310e-02	ci left: 1.067765e-01	ci right 1.155369e-01	k: 2222	n:20000
Cons ci ratio: 4.903294e-03	ci left: 9.672301e-01	ci right 9.720321e-01	k: 19394	n:20000
KS ci ratio: 2.330359e-01	ci left: 1.232340e-02	ci right 1.562013e-02	k: 278	n:20000
TAS2R40   20000 perm   4 sec   (5651 perm/sec)   p_kst 1.390000e-02   p_cons 9.697000e-01   p_joint 1.111000e-01

Joint ci ratio: 7.127061e-02	ci left: 8.832602e-02	ci right 9.488665e-02	k: 2747	n:30000
Cons ci ratio: 4.092395e-03	ci left: 9.663236e-01	ci right 9.703184e-01	k: 29051	n:30000
KS ci ratio: 1.941943e-01	ci left: 1.209779e-02	ci right 1.473103e-02	k: 401	n:30000
TAS2R40   30000 perm   6 sec   (5359 perm/sec)   p_kst 1.336667e-02   p_cons 9.683667e-01   p_joint 9.156667e-02

Joint ci ratio: 6.503001e-02	ci left: 8.056053e-02	ci right 8.600015e-02	k: 3330	n:40000
Cons ci ratio: 3.563411e-03	ci left: 9.662540e-01	ci right 9.697276e-01	k: 38721	n:40000
KS ci ratio: 1.689786e-01	ci left: 1.215240e-02	ci right 1.441908e-02	k: 530	n:40000
TAS2R40   40000 perm   8 sec   (5171 perm/sec)   p_kst 1.325000e-02   p_cons 9.680250e-01   p_joint 8.325000e-02

Joint ci ratio: 6.430429e-02	ci left: 6.695109e-02	ci right 7.141908e-02	k: 3458	n:50000
Cons ci ratio: 3.203678e-03	ci left: 9.661129e-01	ci right 9.692325e-01	k: 48385	n:50000
KS ci ratio: 1.525133e-01	ci left: 1.204472e-02	ci right 1.405240e-02	k: 651	n:50000
TAS2R40   50000 perm   10 sec   (5021 perm/sec)   p_kst 1.302000e-02   p_cons 9.677000e-01   p_joint 6.916000e-02

Joint ci ratio: 6.161298e-02	ci left: 6.124945e-02	ci right 6.515959e-02	k: 3791	n:60000
Cons ci ratio: 2.938411e-03	ci left: 9.659479e-01	ci right 9.688067e-01	k: 58044	n:60000
KS ci ratio: 1.373172e-01	ci left: 1.247914e-02	ci right 1.433503e-02	k: 803	n:60000
TAS2R40   60000 perm   12 sec   (4896 perm/sec)   p_kst 1.338333e-02   p_cons 9.674000e-01   p_joint 6.318333e-02

Joint ci ratio: 6.230103e-02	ci left: 5.185846e-02	ci right 5.520724e-02	k: 3746	n:70000
Cons ci ratio: 2.720970e-03	ci left: 9.660432e-01	ci right 9.686893e-01	k: 67717	n:70000
KS ci ratio: 1.268573e-01	ci left: 1.260282e-02	ci right 1.432358e-02	k: 941	n:70000
TAS2R40   70000 perm   15 sec   (4785 perm/sec)   p_kst 1.344286e-02   p_cons 9.673857e-01   p_joint 5.351429e-02

Joint ci ratio: 5.797247e-02	ci left: 5.249307e-02	ci right 5.563937e-02	k: 4324	n:80000
Cons ci ratio: 2.543589e-03	ci left: 9.661715e-01	ci right 9.686444e-01	k: 77394	n:80000
KS ci ratio: 1.189767e-01	ci left: 1.259041e-02	ci right 1.419517e-02	k: 1070	n:80000
TAS2R40   80000 perm   17 sec   (4684 perm/sec)   p_kst 1.337500e-02   p_cons 9.674250e-01   p_joint 5.405000e-02

Joint ci ratio: 4.807593e-02	ci left: 6.713274e-02	ci right 7.045067e-02	k: 6190	n:90000
Cons ci ratio: 2.267876e-03	ci left: 9.696452e-01	ci right 9.718576e-01	k: 87369	n:90000
KS ci ratio: 1.112346e-01	ci left: 1.285345e-02	ci right 1.437813e-02	k: 1224	n:90000
TAS2R40   90000 perm   20 sec   (4589 perm/sec)   p_kst 1.360000e-02   p_cons 9.707667e-01   p_joint 6.877778e-02

Joint ci ratio: 4.423244e-02	ci left: 7.120703e-02	ci right 7.443780e-02	k: 7281	n:100000
Cons ci ratio: 2.162299e-03	ci left: 9.694122e-01	ci right 9.715204e-01	k: 97048	n:100000
KS ci ratio: 1.055701e-01	ci left: 1.288153e-02	ci right 1.432689e-02	k: 1359	n:100000
TAS2R40   100000 perm   22 sec   (4500 perm/sec)   p_kst 1.359000e-02   p_cons 9.704800e-01   p_joint 7.281000e-02

Joint ci ratio: 4.643468e-02	ci left: 5.943086e-02	ci right 6.226508e-02	k: 6692	n:110000
Cons ci ratio: 2.060924e-03	ci left: 9.694831e-01	ci right 9.714920e-01	k: 106755	n:110000
KS ci ratio: 1.008968e-01	ci left: 1.285292e-02	ci right 1.422745e-02	k: 1488	n:110000
TAS2R40   110000 perm   25 sec   (4417 perm/sec)   p_kst 1.352727e-02   p_cons 9.705000e-01   p_joint 6.083636e-02

Joint ci ratio: 4.429802e-02	ci left: 5.989974e-02	ci right 6.262151e-02	k: 7350	n:120000
Cons ci ratio: 1.979755e-03	ci left: 9.693324e-01	ci right 9.712615e-01	k: 116437	n:120000
KS ci ratio: 9.685443e-02	ci left: 1.281400e-02	ci right 1.412634e-02	k: 1615	n:120000
TAS2R40   120000 perm   28 sec   (4341 perm/sec)   p_kst 1.345833e-02   p_cons 9.703083e-01   p_joint 6.125000e-02

Outputting figure to mutsig2_images.part000000000171/TAS2R40.3_975_120000_0.013458_0.97031_0.06125.png
                gene_name: TAS2R40
               theta_stop: 0.097 
                    nperm: 120000 
                     p_ks: 0.013 
        ci_ks_bounds_left: 0.013 
       ci_ks_bounds_right: 0.014 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.061 
     ci_joint_bounds_left: 0.060 
    ci_joint_bounds_right: 0.063 

Current progress: 64 percent done.
TAS2R9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.301616e-02	ci left: 4.438072e-01	ci right 4.634199e-01	k: 4536	n:10000
Cons ci ratio: 4.615168e-02	ci left: 4.093044e-01	ci right 4.287428e-01	k: 4190	n:10000
KS ci ratio: 8.412142e-02	ci left: 1.708424e-01	ci right 1.859454e-01	k: 1783	n:10000
TAS2R9   10000 perm   2 sec   (6484 perm/sec)   p_kst 1.783000e-01   p_cons 4.190000e-01   p_joint 4.536000e-01

Outputting figure to mutsig2_images.part000000000171/TAS2R9.3_943_10000_0.1783_0.419_0.4536.png
                gene_name: TAS2R9
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 66 percent done.
TBC1D10C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.621107e-02	ci left: 3.179062e-01	ci right 3.363946e-01	k: 3271	n:10000
Cons ci ratio: 4.150350e-02	ci left: 4.615758e-01	ci right 4.812409e-01	k: 4714	n:10000
KS ci ratio: 6.773271e-02	ci left: 2.423276e-01	ci right 2.594177e-01	k: 2508	n:10000
TBC1D10C   10000 perm   2 sec   (6296 perm/sec)   p_kst 2.508000e-01   p_cons 4.714000e-01   p_joint 3.271000e-01

Outputting figure to mutsig2_images.part000000000171/TBC1D10C.3_1377_10000_0.2508_0.4714_0.3271.png
                gene_name: TBC1D10C
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 68 percent done.
TBC1D19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.162892e-02	ci left: 1.475656e-01	ci right 1.618362e-01	k: 1546	n:10000
Cons ci ratio: 6.656394e-02	ci left: 2.488526e-01	ci right 2.660889e-01	k: 2574	n:10000
KS ci ratio: 8.484586e-02	ci left: 1.683846e-01	ci right 1.834047e-01	k: 1758	n:10000
TBC1D19   10000 perm   2 sec   (6070 perm/sec)   p_kst 1.758000e-01   p_cons 2.574000e-01   p_joint 1.546000e-01

Outputting figure to mutsig2_images.part000000000171/TBC1D19.3_1665_10000_0.1758_0.2574_0.1546.png
                gene_name: TBC1D19
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 70 percent done.
TBC1D21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.328272e-02	ci left: 2.684428e-01	ci right 2.860871e-01	k: 2772	n:10000
Cons ci ratio: 5.070478e-02	ci left: 3.645043e-01	ci right 3.835691e-01	k: 3740	n:10000
KS ci ratio: 7.698126e-02	ci left: 1.979127e-01	ci right 2.138590e-01	k: 2058	n:10000
TBC1D21   10000 perm   1 sec   (7055 perm/sec)   p_kst 2.058000e-01   p_cons 3.740000e-01   p_joint 2.772000e-01

Outputting figure to mutsig2_images.part000000000171/TBC1D21.3_1055_10000_0.2058_0.374_0.2772.png
                gene_name: TBC1D21
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 72 percent done.
TBC1D22A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.032079e-02	ci left: 7.800585e-01	ci right 7.961733e-01	k: 7882	n:10000
KS ci ratio: 1.037541e-02	ci left: 9.295765e-01	ci right 9.393685e-01	k: 9346	n:10000
TBC1D22A   10000 perm   2 sec   (6104 perm/sec)   p_kst 9.346000e-01   p_cons 7.882000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000171/TBC1D22A.3_1606_10000_0.9346_0.7882_1.png
                gene_name: TBC1D22A
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 74 percent done.
TBC1D24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.013606e-02	ci left: 9.324734e-01	ci right 9.420699e-01	k: 9374	n:10000
Cons ci ratio: 2.772690e-02	ci left: 6.571620e-01	ci right 6.757409e-01	k: 6665	n:10000
KS ci ratio: 4.225205e-02	ci left: 4.526899e-01	ci right 4.723320e-01	k: 4625	n:10000
TBC1D24   10000 perm   2 sec   (6263 perm/sec)   p_kst 4.625000e-01   p_cons 6.665000e-01   p_joint 9.374000e-01

Outputting figure to mutsig2_images.part000000000171/TBC1D24.3_1686_10000_0.4625_0.6665_0.9374.png
                gene_name: TBC1D24
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 77 percent done.
TAF6L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.643060e-02	ci left: 8.434611e-01	ci right 8.575341e-01	k: 8506	n:10000
Cons ci ratio: 1.033297e-02	ci left: 9.300936e-01	ci right 9.398511e-01	k: 9351	n:10000
KS ci ratio: 3.643068e-02	ci left: 5.266669e-01	ci right 5.463118e-01	k: 5365	n:10000
TAF6L   10000 perm   2 sec   (6547 perm/sec)   p_kst 5.365000e-01   p_cons 9.351000e-01   p_joint 8.506000e-01

Outputting figure to mutsig2_images.part000000000171/TAF6L.2_1909_10000_0.5365_0.9351_0.8506.png
                gene_name: TAF6L
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 79 percent done.
TAF7L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.313289e-01	ci left: 7.640391e-02	ci right 8.724117e-02	k: 817	n:10000
Cons ci ratio: 7.992458e-02	ci left: 1.860928e-01	ci right 2.016859e-01	k: 1938	n:10000
KS ci ratio: 3.618281e-01	ci left: 9.503508e-03	ci right 1.378807e-02	k: 115	n:10000
TAF7L   10000 perm   1 sec   (6812 perm/sec)   p_kst 1.150000e-02   p_cons 1.938000e-01   p_joint 8.170000e-02

Joint ci ratio: 7.313472e-02	ci left: 1.209876e-01	ci right 1.302216e-01	k: 2511	n:20000
Cons ci ratio: 5.855688e-02	ci left: 1.776625e-01	ci right 1.884298e-01	k: 3660	n:20000
KS ci ratio: 2.646529e-01	ci left: 9.413987e-03	ci right 1.233084e-02	k: 216	n:20000
TAF7L   20000 perm   3 sec   (5987 perm/sec)   p_kst 1.080000e-02   p_cons 1.830000e-01   p_joint 1.255500e-01

Joint ci ratio: 7.279728e-02	ci left: 8.491596e-02	ci right 9.136406e-02	k: 2643	n:30000
Cons ci ratio: 4.767098e-02	ci left: 1.795303e-01	ci right 1.883310e-01	k: 5517	n:30000
KS ci ratio: 2.155883e-01	ci left: 9.724379e-03	ci right 1.210509e-02	k: 326	n:30000
TAF7L   30000 perm   5 sec   (5669 perm/sec)   p_kst 1.086667e-02   p_cons 1.839000e-01   p_joint 8.810000e-02

Joint ci ratio: 5.038682e-02	ci left: 1.281036e-01	ci right 1.347500e-01	k: 5256	n:40000
Cons ci ratio: 4.110080e-02	ci left: 1.814532e-01	ci right 1.890925e-01	k: 7410	n:40000
KS ci ratio: 1.856325e-01	ci left: 1.000097e-02	ci right 1.207093e-02	k: 440	n:40000
TAF7L   40000 perm   7 sec   (5472 perm/sec)   p_kst 1.100000e-02   p_cons 1.852500e-01   p_joint 1.314000e-01

Joint ci ratio: 4.201177e-02	ci left: 1.451755e-01	ci right 1.514254e-01	k: 7414	n:50000
Cons ci ratio: 3.494565e-02	ci left: 1.975345e-01	ci right 2.045802e-01	k: 10052	n:50000
KS ci ratio: 1.653165e-01	ci left: 1.020014e-02	ci right 1.205728e-02	k: 555	n:50000
TAF7L   50000 perm   9 sec   (5321 perm/sec)   p_kst 1.110000e-02   p_cons 2.010400e-01   p_joint 1.482800e-01

Joint ci ratio: 4.885552e-02	ci left: 9.452770e-02	ci right 9.927804e-02	k: 5813	n:60000
Cons ci ratio: 3.188700e-02	ci left: 1.979818e-01	ci right 2.044138e-01	k: 12071	n:60000
KS ci ratio: 1.490269e-01	ci left: 1.054987e-02	ci right 1.226455e-02	k: 683	n:60000
TAF7L   60000 perm   12 sec   (5187 perm/sec)   p_kst 1.138333e-02   p_cons 2.011833e-01   p_joint 9.688333e-02

Joint ci ratio: 4.566888e-02	ci left: 9.304963e-02	ci right 9.741256e-02	k: 6665	n:70000
Cons ci ratio: 2.957291e-02	ci left: 1.976672e-01	ci right 2.036148e-01	k: 14044	n:70000
KS ci ratio: 1.395734e-01	ci left: 1.036462e-02	ci right 1.193344e-02	k: 779	n:70000
TAF7L   70000 perm   14 sec   (5064 perm/sec)   p_kst 1.112857e-02   p_cons 2.006286e-01   p_joint 9.521429e-02

Joint ci ratio: 4.031015e-02	ci left: 1.035776e-01	ci right 1.078511e-01	k: 8456	n:80000
Cons ci ratio: 2.764939e-02	ci left: 1.980162e-01	ci right 2.035805e-01	k: 16063	n:80000
KS ci ratio: 1.294207e-01	ci left: 1.060327e-02	ci right 1.208249e-02	k: 906	n:80000
TAF7L   80000 perm   16 sec   (4956 perm/sec)   p_kst 1.132500e-02   p_cons 2.007875e-01   p_joint 1.057000e-01

Joint ci ratio: 3.273815e-02	ci left: 1.351570e-01	ci right 1.396664e-01	k: 12366	n:90000
Cons ci ratio: 2.610064e-02	ci left: 1.977778e-01	ci right 2.030193e-01	k: 18035	n:90000
KS ci ratio: 1.222237e-01	ci left: 1.060890e-02	ci right 1.200064e-02	k: 1016	n:90000
TAF7L   90000 perm   19 sec   (4854 perm/sec)   p_kst 1.128889e-02   p_cons 2.003889e-01   p_joint 1.374000e-01

Joint ci ratio: 5.701291e-02	ci left: 4.385158e-02	ci right 4.643488e-02	k: 4513	n:100000
Cons ci ratio: 2.475584e-02	ci left: 1.979824e-01	ci right 2.029550e-01	k: 20046	n:100000
KS ci ratio: 1.161077e-01	ci left: 1.061523e-02	ci right 1.193334e-02	k: 1126	n:100000
TAF7L   100000 perm   21 sec   (4756 perm/sec)   p_kst 1.126000e-02   p_cons 2.004600e-01   p_joint 4.513000e-02

Joint ci ratio: 4.077230e-02	ci left: 7.593551e-02	ci right 7.910499e-02	k: 8526	n:110000
Cons ci ratio: 2.360290e-02	ci left: 1.981102e-01	ci right 2.028511e-01	k: 22052	n:110000
KS ci ratio: 1.106908e-01	ci left: 1.064837e-02	ci right 1.190487e-02	k: 1239	n:110000
TAF7L   110000 perm   24 sec   (4664 perm/sec)   p_kst 1.126364e-02   p_cons 2.004727e-01   p_joint 7.750909e-02

Joint ci ratio: 3.694172e-02	ci left: 8.419646e-02	ci right 8.737359e-02	k: 10293	n:120000
Cons ci ratio: 2.260677e-02	ci left: 1.980884e-01	ci right 2.026261e-01	k: 24042	n:120000
KS ci ratio: 1.066473e-01	ci left: 1.053923e-02	ci right 1.173457e-02	k: 1335	n:120000
TAF7L   120000 perm   26 sec   (4577 perm/sec)   p_kst 1.112500e-02   p_cons 2.003500e-01   p_joint 8.577500e-02

Joint ci ratio: 4.196984e-02	ci left: 6.156330e-02	ci right 6.421008e-02	k: 8174	n:130000
Cons ci ratio: 2.174473e-02	ci left: 1.978132e-01	ci right 2.021695e-01	k: 25998	n:130000
KS ci ratio: 1.021901e-01	ci left: 1.062002e-02	ci right 1.177117e-02	k: 1454	n:130000
TAF7L   130000 perm   29 sec   (4493 perm/sec)   p_kst 1.118462e-02   p_cons 1.999846e-01   p_joint 6.287692e-02

Joint ci ratio: 3.472534e-02	ci left: 8.197803e-02	ci right 8.488211e-02	k: 11679	n:140000
Cons ci ratio: 2.098135e-02	ci left: 1.974734e-01	ci right 2.016676e-01	k: 27939	n:140000
KS ci ratio: 9.828032e-02	ci left: 1.068320e-02	ci right 1.179433e-02	k: 1572	n:140000
TAF7L   140000 perm   32 sec   (4410 perm/sec)   p_kst 1.122857e-02   p_cons 1.995643e-01   p_joint 8.342143e-02

Outputting figure to mutsig2_images.part000000000171/TAF7L.2_1441_140000_0.011229_0.19956_0.083421.png
                gene_name: TAF7L
               theta_stop: 0.098 
                    nperm: 140000 
                     p_ks: 0.011 
        ci_ks_bounds_left: 0.011 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.083 
     ci_joint_bounds_left: 0.082 
    ci_joint_bounds_right: 0.085 

Current progress: 81 percent done.
TAF9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.206560e-02	ci left: 4.548861e-01	ci right 4.745345e-01	k: 4647	n:10000
Cons ci ratio: 1.070134e-01	ci left: 1.119342e-01	ci right 1.246891e-01	k: 1182	n:10000
KS ci ratio: 1.175954e-01	ci left: 9.408985e-02	ci right 1.059443e-01	k: 999	n:10000
TAF9   10000 perm   2 sec   (6452 perm/sec)   p_kst 9.990000e-02   p_cons 1.182000e-01   p_joint 4.647000e-01

Joint ci ratio: 2.611380e-02	ci left: 5.228039e-01	ci right 5.366875e-01	k: 10595	n:20000
Cons ci ratio: 7.698740e-02	ci left: 1.103149e-01	ci right 1.191974e-01	k: 2294	n:20000
KS ci ratio: 8.397294e-02	ci left: 9.410938e-02	ci right 1.024078e-01	k: 1964	n:20000
TAF9   20000 perm   4 sec   (5702 perm/sec)   p_kst 9.820000e-02   p_cons 1.147000e-01   p_joint 5.297500e-01

Outputting figure to mutsig2_images.part000000000171/TAF9.2_1361_20000_0.0982_0.1147_0.52975.png
                gene_name: TAF9
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.098 
        ci_ks_bounds_left: 0.094 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 83 percent done.
TARBP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.037541e-02	ci left: 9.295765e-01	ci right 9.393685e-01	k: 9346	n:10000
Cons ci ratio: 8.154618e-03	ci left: 9.545097e-01	ci right 9.624204e-01	k: 9586	n:10000
KS ci ratio: 6.123146e-02	ci left: 2.817130e-01	ci right 2.996091e-01	k: 2906	n:10000
TARBP2   10000 perm   2 sec   (6317 perm/sec)   p_kst 2.906000e-01   p_cons 9.586000e-01   p_joint 9.346000e-01

Outputting figure to mutsig2_images.part000000000171/TARBP2.2_1137_10000_0.2906_0.9586_0.9346.png
                gene_name: TARBP2
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 85 percent done.
TAS2R3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.024168e-02	ci left: 7.813762e-01	ci right 7.974549e-01	k: 7895	n:10000
KS ci ratio: 2.085518e-02	ci left: 7.711422e-01	ci right 7.874947e-01	k: 7794	n:10000
TAS2R3   10000 perm   1 sec   (7053 perm/sec)   p_kst 7.794000e-01   p_cons 7.895000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000171/TAS2R3.2_955_10000_0.7794_0.7895_1.png
                gene_name: TAS2R3
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
TAS2R38
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.233967e-02	ci left: 9.041181e-01	ci right 9.154419e-01	k: 9099	n:10000
Cons ci ratio: 3.003189e-02	ci left: 6.205509e-01	ci right 6.395732e-01	k: 6301	n:10000
KS ci ratio: 1.864654e-02	ci left: 8.077560e-01	ci right 8.230598e-01	k: 8155	n:10000
TAS2R38   10000 perm   1 sec   (6781 perm/sec)   p_kst 8.155000e-01   p_cons 6.301000e-01   p_joint 9.099000e-01

Outputting figure to mutsig2_images.part000000000171/TAS2R38.2_1006_10000_0.8155_0.6301_0.9099.png
                gene_name: TAS2R38
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.92 

Current progress: 89 percent done.
TAS2R42
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.601525e-02	ci left: 5.323740e-01	ci right 5.520014e-01	k: 5422	n:10000
Cons ci ratio: 4.871812e-02	ci left: 3.833100e-01	ci right 4.025524e-01	k: 3929	n:10000
KS ci ratio: 2.022950e-02	ci left: 7.815789e-01	ci right 7.976520e-01	k: 7897	n:10000
TAS2R42   10000 perm   1 sec   (6812 perm/sec)   p_kst 7.897000e-01   p_cons 3.929000e-01   p_joint 5.422000e-01

Outputting figure to mutsig2_images.part000000000171/TAS2R42.2_949_10000_0.7897_0.3929_0.5422.png
                gene_name: TAS2R42
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 91 percent done.
TATDN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.181215e+00	ci left: 4.796397e-04	ci right 1.838264e-03	k: 10	n:10000
Cons ci ratio: 4.891266e-02	ci left: 3.814188e-01	ci right 4.006447e-01	k: 3910	n:10000
KS ci ratio: 1.238931e+00	ci left: 4.116173e-04	ci right 1.707790e-03	k: 9	n:10000
TATDN1   10000 perm   1 sec   (6869 perm/sec)   p_kst 9.000000e-04   p_cons 3.910000e-01   p_joint 1.000000e-03

Joint ci ratio: 9.795835e-01	ci left: 4.198281e-04	ci right 1.236710e-03	k: 15	n:20000
Cons ci ratio: 3.457897e-02	ci left: 3.843779e-01	ci right 3.979537e-01	k: 7823	n:20000
KS ci ratio: 1.011735e+00	ci left: 3.827477e-04	ci right 1.174202e-03	k: 14	n:20000
TATDN1   20000 perm   3 sec   (6041 perm/sec)   p_kst 7.000000e-04   p_cons 3.911500e-01   p_joint 7.500000e-04

Joint ci ratio: 7.153210e-01	ci left: 6.474844e-04	ci right 1.388002e-03	k: 29	n:30000
Cons ci ratio: 2.793356e-02	ci left: 3.907254e-01	ci right 4.018280e-01	k: 11888	n:30000
KS ci ratio: 7.540522e-01	ci left: 5.662111e-04	ci right 1.269611e-03	k: 26	n:30000
TATDN1   30000 perm   5 sec   (5730 perm/sec)   p_kst 8.666667e-04   p_cons 3.962667e-01   p_joint 9.666667e-04

Joint ci ratio: 4.082129e-01	ci left: 1.832071e-03	ci right 2.792472e-03	k: 91	n:40000
Cons ci ratio: 2.418988e-02	ci left: 3.915018e-01	ci right 4.011133e-01	k: 15852	n:40000
KS ci ratio: 5.974655e-01	ci left: 7.568492e-04	ci right 1.419033e-03	k: 42	n:40000
TATDN1   40000 perm   7 sec   (5520 perm/sec)   p_kst 1.050000e-03   p_cons 3.963000e-01   p_joint 2.275000e-03

Joint ci ratio: 3.955876e-01	ci left: 1.573482e-03	ci right 2.366130e-03	k: 97	n:50000
Cons ci ratio: 2.168792e-02	ci left: 3.908710e-01	ci right 3.994612e-01	k: 19758	n:50000
KS ci ratio: 5.331510e-01	ci left: 7.941104e-04	ci right 1.386280e-03	k: 53	n:50000
TATDN1   50000 perm   9 sec   (5363 perm/sec)   p_kst 1.060000e-03   p_cons 3.951600e-01   p_joint 1.940000e-03

Joint ci ratio: 3.309110e-01	ci left: 1.947903e-03	ci right 2.734806e-03	k: 139	n:60000
Cons ci ratio: 1.976848e-02	ci left: 3.919671e-01	ci right 3.998097e-01	k: 23753	n:60000
KS ci ratio: 4.786328e-01	ci left: 8.508389e-04	ci right 1.399260e-03	k: 66	n:60000
TATDN1   60000 perm   11 sec   (5218 perm/sec)   p_kst 1.100000e-03   p_cons 3.958833e-01   p_joint 2.316667e-03

Joint ci ratio: 2.149511e-01	ci left: 4.220328e-03	ci right 5.249959e-03	k: 330	n:70000
Cons ci ratio: 1.828730e-02	ci left: 3.926452e-01	ci right 3.999062e-01	k: 27739	n:70000
KS ci ratio: 4.554466e-01	ci left: 8.175199e-04	ci right 1.311060e-03	k: 73	n:70000
TATDN1   70000 perm   14 sec   (5092 perm/sec)   p_kst 1.042857e-03   p_cons 3.962714e-01   p_joint 4.714286e-03

Joint ci ratio: 2.926648e-01	ci left: 1.910420e-03	ci right 2.576502e-03	k: 178	n:80000
Cons ci ratio: 1.712134e-02	ci left: 3.924588e-01	ci right 3.992487e-01	k: 31668	n:80000
KS ci ratio: 4.380474e-01	ci left: 7.818886e-04	ci right 1.230570e-03	k: 79	n:80000
TATDN1   80000 perm   16 sec   (4978 perm/sec)   p_kst 9.875000e-04   p_cons 3.958500e-01   p_joint 2.225000e-03

Joint ci ratio: 2.761850e-01	ci left: 1.925174e-03	ci right 2.552045e-03	k: 200	n:90000
Cons ci ratio: 1.611691e-02	ci left: 3.934018e-01	ci right 3.998048e-01	k: 35694	n:90000
KS ci ratio: 4.084770e-01	ci left: 8.141593e-04	ci right 1.241277e-03	k: 91	n:90000
TATDN1   90000 perm   18 sec   (4872 perm/sec)   p_kst 1.011111e-03   p_cons 3.966000e-01   p_joint 2.222222e-03

Joint ci ratio: 2.587428e-01	ci left: 1.993910e-03	ci right 2.595541e-03	k: 228	n:100000
Cons ci ratio: 1.530554e-02	ci left: 3.930767e-01	ci right 3.991493e-01	k: 39611	n:100000
KS ci ratio: 3.860482e-01	ci left: 8.317623e-04	ci right 1.238075e-03	k: 102	n:100000
TATDN1   100000 perm   21 sec   (4776 perm/sec)   p_kst 1.020000e-03   p_cons 3.961100e-01   p_joint 2.280000e-03

Joint ci ratio: 2.476396e-01	ci left: 1.991445e-03	ci right 2.562578e-03	k: 249	n:110000
Cons ci ratio: 1.457697e-02	ci left: 3.937527e-01	ci right 3.995436e-01	k: 43631	n:110000
KS ci ratio: 3.685715e-01	ci left: 8.384393e-04	ci right 1.225011e-03	k: 112	n:110000
TATDN1   110000 perm   23 sec   (4681 perm/sec)   p_kst 1.018182e-03   p_cons 3.966455e-01   p_joint 2.263636e-03

Joint ci ratio: 2.374144e-01	ci left: 1.997688e-03	ci right 2.543479e-03	k: 271	n:120000
Cons ci ratio: 1.394534e-02	ci left: 3.942550e-01	ci right 3.997999e-01	k: 47643	n:120000
KS ci ratio: 3.504313e-01	ci left: 8.595444e-04	ci right 1.231914e-03	k: 124	n:120000
TATDN1   120000 perm   26 sec   (4591 perm/sec)   p_kst 1.033333e-03   p_cons 3.970250e-01   p_joint 2.258333e-03

Joint ci ratio: 2.311338e-01	ci left: 1.952627e-03	ci right 2.469979e-03	k: 286	n:130000
Cons ci ratio: 1.342117e-02	ci left: 3.935474e-01	ci right 3.988726e-01	k: 51507	n:130000
KS ci ratio: 3.463104e-01	ci left: 8.144798e-04	ci right 1.162245e-03	k: 127	n:130000
TATDN1   130000 perm   29 sec   (4488 perm/sec)   p_kst 9.769231e-04   p_cons 3.962077e-01   p_joint 2.200000e-03

Joint ci ratio: 2.257012e-01	ci left: 1.907427e-03	ci right 2.399271e-03	k: 300	n:140000
Cons ci ratio: 1.294845e-02	ci left: 3.930729e-01	ci right 3.982028e-01	k: 55389	n:140000
KS ci ratio: 3.384731e-01	ci left: 7.954738e-04	ci right 1.125758e-03	k: 133	n:140000
TATDN1   140000 perm   32 sec   (4404 perm/sec)   p_kst 9.500000e-04   p_cons 3.956357e-01   p_joint 2.142857e-03

Joint ci ratio: 2.175417e-01	ci left: 1.925091e-03	ci right 2.401147e-03	k: 323	n:150000
Cons ci ratio: 1.250458e-02	ci left: 3.933439e-01	ci right 3.983001e-01	k: 59373	n:150000
KS ci ratio: 3.288023e-01	ci left: 7.913085e-04	ci right 1.108493e-03	k: 141	n:150000
TATDN1   150000 perm   35 sec   (4329 perm/sec)   p_kst 9.400000e-04   p_cons 3.958200e-01   p_joint 2.153333e-03

Joint ci ratio: 2.284082e-01	ci left: 1.627709e-03	ci right 2.053167e-03	k: 293	n:160000
Cons ci ratio: 1.210850e-02	ci left: 3.933839e-01	ci right 3.981824e-01	k: 63325	n:160000
KS ci ratio: 3.157296e-01	ci left: 8.107888e-04	ci right 1.120254e-03	k: 153	n:160000
TATDN1   160000 perm   38 sec   (4255 perm/sec)   p_kst 9.562500e-04   p_cons 3.957812e-01   p_joint 1.831250e-03

Joint ci ratio: 2.016657e-01	ci left: 1.994039e-03	ci right 2.446734e-03	k: 376	n:170000
Cons ci ratio: 1.174970e-02	ci left: 3.933450e-01	ci right 3.979998e-01	k: 67264	n:170000
KS ci ratio: 3.031888e-01	ci left: 8.336318e-04	ci right 1.136743e-03	k: 166	n:170000
TATDN1   170000 perm   41 sec   (4184 perm/sec)   p_kst 9.764706e-04   p_cons 3.956706e-01   p_joint 2.211765e-03

Joint ci ratio: 1.960273e-01	ci left: 1.999398e-03	ci right 2.439103e-03	k: 398	n:180000
Cons ci ratio: 1.141928e-02	ci left: 3.933844e-01	ci right 3.979079e-01	k: 71216	n:180000
KS ci ratio: 2.944995e-01	ci left: 8.387108e-04	ci right 1.133298e-03	k: 176	n:180000
TATDN1   180000 perm   44 sec   (4115 perm/sec)   p_kst 9.777778e-04   p_cons 3.956444e-01   p_joint 2.211111e-03

Joint ci ratio: 2.075643e-01	ci left: 1.679247e-03	ci right 2.073042e-03	k: 355	n:190000
Cons ci ratio: 1.111881e-02	ci left: 3.932688e-01	ci right 3.976712e-01	k: 75139	n:190000
KS ci ratio: 2.888455e-01	ci left: 8.287145e-04	ci right 1.113182e-03	k: 183	n:190000
TATDN1   190000 perm   47 sec   (4050 perm/sec)   p_kst 9.631579e-04   p_cons 3.954684e-01   p_joint 1.868421e-03

Joint ci ratio: 2.030529e-01	ci left: 1.671171e-03	ci right 2.053498e-03	k: 371	n:200000
Cons ci ratio: 1.082853e-02	ci left: 3.937108e-01	ci right 3.980022e-01	k: 79171	n:200000
KS ci ratio: 2.835051e-01	ci left: 8.197664e-04	ci right 1.095029e-03	k: 190	n:200000
TATDN1   200000 perm   50 sec   (3986 perm/sec)   p_kst 9.500000e-04   p_cons 3.958550e-01   p_joint 1.855000e-03

Joint ci ratio: 1.985673e-01	ci left: 1.668474e-03	ci right 2.040730e-03	k: 388	n:210000
Cons ci ratio: 1.057257e-02	ci left: 3.935363e-01	ci right 3.977238e-01	k: 83082	n:210000
KS ci ratio: 2.749964e-01	ci left: 8.338732e-04	ci right 1.104016e-03	k: 202	n:210000
TATDN1   210000 perm   53 sec   (3926 perm/sec)   p_kst 9.619048e-04   p_cons 3.956286e-01   p_joint 1.847619e-03

Joint ci ratio: 1.938884e-01	ci left: 1.674755e-03	ci right 2.038570e-03	k: 407	n:220000
Cons ci ratio: 1.032530e-02	ci left: 3.937784e-01	ci right 3.978698e-01	k: 87081	n:220000
KS ci ratio: 2.672105e-01	ci left: 8.468095e-04	ci right 1.112076e-03	k: 214	n:220000
TATDN1   220000 perm   57 sec   (3864 perm/sec)   p_kst 9.727273e-04   p_cons 3.958227e-01   p_joint 1.850000e-03

Joint ci ratio: 1.908738e-01	ci left: 1.655738e-03	ci right 2.009180e-03	k: 420	n:230000
Cons ci ratio: 1.008489e-02	ci left: 3.944609e-01	ci right 3.984634e-01	k: 91186	n:230000
KS ci ratio: 2.623748e-01	ci left: 8.424654e-04	ci right 1.100812e-03	k: 222	n:230000
TATDN1   230000 perm   60 sec   (3807 perm/sec)   p_kst 9.652174e-04   p_cons 3.964609e-01   p_joint 1.826087e-03

Joint ci ratio: 1.864947e-01	ci left: 1.666147e-03	ci right 2.012728e-03	k: 440	n:240000
Cons ci ratio: 9.870887e-03	ci left: 3.945838e-01	ci right 3.985021e-01	k: 95170	n:240000
KS ci ratio: 2.550442e-01	ci left: 8.580185e-04	ci right 1.112614e-03	k: 235	n:240000
TATDN1   240000 perm   64 sec   (3750 perm/sec)   p_kst 9.791667e-04   p_cons 3.965417e-01   p_joint 1.833333e-03

Joint ci ratio: 1.838072e-01	ci left: 1.649090e-03	ci right 1.986628e-03	k: 453	n:250000
Cons ci ratio: 9.670037e-03	ci left: 3.946936e-01	ci right 3.985328e-01	k: 99153	n:250000
KS ci ratio: 2.523872e-01	ci left: 8.424252e-04	ci right 1.089380e-03	k: 240	n:250000
TATDN1   250000 perm   68 sec   (3686 perm/sec)   p_kst 9.600000e-04   p_cons 3.966120e-01   p_joint 1.812000e-03

Joint ci ratio: 1.816227e-01	ci left: 1.626034e-03	ci right 1.954462e-03	k: 464	n:260000
Cons ci ratio: 9.478987e-03	ci left: 3.948957e-01	ci right 3.986605e-01	k: 103162	n:260000
KS ci ratio: 2.483004e-01	ci left: 8.388630e-04	ci right 1.080177e-03	k: 248	n:260000
TATDN1   260000 perm   72 sec   (3620 perm/sec)   p_kst 9.538462e-04   p_cons 3.967769e-01   p_joint 1.784615e-03

Joint ci ratio: 1.783913e-01	ci left: 1.625936e-03	ci right 1.947872e-03	k: 481	n:270000
Cons ci ratio: 9.305308e-03	ci left: 3.947504e-01	ci right 3.984445e-01	k: 107081	n:270000
KS ci ratio: 2.439315e-01	ci left: 8.390717e-04	ci right 1.075555e-03	k: 257	n:270000
TATDN1   270000 perm   76 sec   (3572 perm/sec)   p_kst 9.518519e-04   p_cons 3.965963e-01   p_joint 1.781481e-03

Joint ci ratio: 1.586733e-01	ci left: 2.002401e-03	ci right 2.350888e-03	k: 608	n:280000
Cons ci ratio: 9.136949e-03	ci left: 3.948195e-01	ci right 3.984470e-01	k: 111057	n:280000
KS ci ratio: 2.345669e-01	ci left: 8.796129e-04	ci right 1.116625e-03	k: 278	n:280000
TATDN1   280000 perm   79 sec   (3525 perm/sec)   p_kst 9.928571e-04   p_cons 3.966321e-01   p_joint 2.171429e-03

Joint ci ratio: 1.557590e-01	ci left: 2.009544e-03	ci right 2.352251e-03	k: 631	n:290000
Cons ci ratio: 8.977797e-03	ci left: 3.948637e-01	ci right 3.984281e-01	k: 115027	n:290000
KS ci ratio: 2.296788e-01	ci left: 8.882551e-04	ci right 1.121902e-03	k: 290	n:290000
TATDN1   290000 perm   83 sec   (3478 perm/sec)   p_kst 1.000000e-03   p_cons 3.966448e-01   p_joint 2.175862e-03

Joint ci ratio: 1.539446e-01	ci left: 1.990620e-03	ci right 2.325780e-03	k: 646	n:300000
Cons ci ratio: 8.822566e-03	ci left: 3.951286e-01	ci right 3.986334e-01	k: 119064	n:300000
KS ci ratio: 2.265861e-01	ci left: 8.837891e-04	ci right 1.112693e-03	k: 298	n:300000
TATDN1   300000 perm   87 sec   (3433 perm/sec)   p_kst 9.933333e-04   p_cons 3.968800e-01   p_joint 2.153333e-03

Joint ci ratio: 1.512788e-01	ci left: 1.997767e-03	ci right 2.327779e-03	k: 669	n:310000
Cons ci ratio: 8.676108e-03	ci left: 3.953221e-01	ci right 3.987701e-01	k: 123084	n:310000
KS ci ratio: 2.214593e-01	ci left: 8.979080e-04	ci right 1.124490e-03	k: 312	n:310000
TATDN1   310000 perm   91 sec   (3391 perm/sec)   p_kst 1.006452e-03   p_cons 3.970452e-01   p_joint 2.158065e-03

Joint ci ratio: 1.487469e-01	ci left: 2.004515e-03	ci right 2.329606e-03	k: 692	n:320000
Cons ci ratio: 8.540665e-03	ci left: 3.952823e-01	ci right 3.986758e-01	k: 127033	n:320000
KS ci ratio: 2.176672e-01	ci left: 9.023333e-04	ci right 1.125612e-03	k: 323	n:320000
TATDN1   320000 perm   96 sec   (3349 perm/sec)   p_kst 1.009375e-03   p_cons 3.969781e-01   p_joint 2.162500e-03

Joint ci ratio: 1.469564e-01	ci left: 1.993380e-03	ci right 2.312433e-03	k: 709	n:330000
Cons ci ratio: 8.415421e-03	ci left: 3.950151e-01	ci right 3.983564e-01	k: 130906	n:330000
KS ci ratio: 2.134266e-01	ci left: 9.122579e-04	ci right 1.133019e-03	k: 336	n:330000
TATDN1   330000 perm   100 sec   (3306 perm/sec)   p_kst 1.018182e-03   p_cons 3.966848e-01   p_joint 2.148485e-03

Joint ci ratio: 1.446321e-01	ci left: 1.999932e-03	ci right 2.314532e-03	k: 732	n:340000
Cons ci ratio: 8.292162e-03	ci left: 3.949580e-01	ci right 3.982496e-01	k: 134845	n:340000
KS ci ratio: 2.106329e-01	ci left: 9.104917e-04	ci right 1.127569e-03	k: 345	n:340000
TATDN1   340000 perm   104 sec   (3264 perm/sec)   p_kst 1.014706e-03   p_cons 3.966029e-01   p_joint 2.152941e-03

Joint ci ratio: 1.421324e-01	ci left: 2.014413e-03	ci right 2.325350e-03	k: 758	n:350000
Cons ci ratio: 8.174164e-03	ci left: 3.949045e-01	ci right 3.981486e-01	k: 138784	n:350000
KS ci ratio: 2.070722e-01	ci left: 9.169706e-04	ci right 1.131429e-03	k: 357	n:350000
TATDN1   350000 perm   109 sec   (3224 perm/sec)   p_kst 1.020000e-03   p_cons 3.965257e-01   p_joint 2.165714e-03

Joint ci ratio: 1.398473e-01	ci left: 2.025452e-03	ci right 2.332649e-03	k: 783	n:360000
Cons ci ratio: 8.057509e-03	ci left: 3.950653e-01	ci right 3.982641e-01	k: 142799	n:360000
KS ci ratio: 2.036861e-01	ci left: 9.231187e-04	ci right 1.135045e-03	k: 369	n:360000
TATDN1   360000 perm   113 sec   (3185 perm/sec)   p_kst 1.025000e-03   p_cons 3.966639e-01   p_joint 2.175000e-03

Joint ci ratio: 1.379255e-01	ci left: 2.028104e-03	ci right 2.331128e-03	k: 805	n:370000
Cons ci ratio: 7.948447e-03	ci left: 3.950529e-01	ci right 3.982082e-01	k: 146753	n:370000
KS ci ratio: 2.012534e-01	ci left: 9.212606e-04	ci right 1.129924e-03	k: 378	n:370000
TATDN1   370000 perm   118 sec   (3146 perm/sec)   p_kst 1.021622e-03   p_cons 3.966297e-01   p_joint 2.175676e-03

Joint ci ratio: 1.351838e-01	ci left: 2.058610e-03	ci right 2.359587e-03	k: 838	n:380000
Cons ci ratio: 7.843653e-03	ci left: 3.950441e-01	ci right 3.981575e-01	k: 150708	n:380000
KS ci ratio: 1.983948e-01	ci left: 9.245161e-04	ci right 1.130583e-03	k: 389	n:380000
TATDN1   380000 perm   122 sec   (3109 perm/sec)   p_kst 1.023684e-03   p_cons 3.966000e-01   p_joint 2.205263e-03

Joint ci ratio: 1.332131e-01	ci left: 2.067777e-03	ci right 2.365338e-03	k: 863	n:390000
Cons ci ratio: 7.741612e-03	ci left: 3.951154e-01	ci right 3.981887e-01	k: 154694	n:390000
KS ci ratio: 1.956545e-01	ci left: 9.276246e-04	ci right 1.131188e-03	k: 400	n:390000
TATDN1   390000 perm   127 sec   (3072 perm/sec)   p_kst 1.025641e-03   p_cons 3.966513e-01   p_joint 2.212821e-03

Joint ci ratio: 1.316979e-01	ci left: 2.064425e-03	ci right 2.357860e-03	k: 883	n:400000
Cons ci ratio: 7.643053e-03	ci left: 3.952084e-01	ci right 3.982431e-01	k: 158690	n:400000
KS ci ratio: 1.932597e-01	ci left: 9.282169e-04	ci right 1.129124e-03	k: 410	n:400000
TATDN1   400000 perm   132 sec   (3037 perm/sec)   p_kst 1.025000e-03   p_cons 3.967250e-01   p_joint 2.207500e-03

Joint ci ratio: 1.303779e-01	ci left: 2.056536e-03	ci right 2.345693e-03	k: 901	n:410000
Cons ci ratio: 7.550626e-03	ci left: 3.951411e-01	ci right 3.981384e-01	k: 162622	n:410000
KS ci ratio: 1.914064e-01	ci left: 9.241499e-04	ci right 1.122035e-03	k: 418	n:410000
TATDN1   410000 perm   137 sec   (3003 perm/sec)   p_kst 1.019512e-03   p_cons 3.966390e-01   p_joint 2.197561e-03

Joint ci ratio: 1.286770e-01	ci left: 2.062863e-03	ci right 2.348836e-03	k: 925	n:420000
Cons ci ratio: 7.458839e-03	ci left: 3.952462e-01	ci right 3.982076e-01	k: 166625	n:420000
KS ci ratio: 1.885038e-01	ci left: 9.316272e-04	ci right 1.127742e-03	k: 431	n:420000
TATDN1   420000 perm   141 sec   (2969 perm/sec)   p_kst 1.026190e-03   p_cons 3.967262e-01   p_joint 2.202381e-03

Joint ci ratio: 1.275126e-01	ci left: 2.053156e-03	ci right 2.335014e-03	k: 942	n:430000
Cons ci ratio: 7.376015e-03	ci left: 3.949770e-01	ci right 3.979034e-01	k: 170469	n:430000
KS ci ratio: 1.874235e-01	ci left: 9.210417e-04	ci right 1.113691e-03	k: 436	n:430000
TATDN1   430000 perm   146 sec   (2935 perm/sec)   p_kst 1.013953e-03   p_cons 3.964395e-01   p_joint 2.190698e-03

Joint ci ratio: 1.262475e-01	ci left: 2.048305e-03	ci right 2.326498e-03	k: 961	n:440000
Cons ci ratio: 7.295367e-03	ci left: 3.947544e-01	ci right 3.976470e-01	k: 174328	n:440000
KS ci ratio: 1.855231e-01	ci left: 9.196086e-04	ci right 1.109788e-03	k: 445	n:440000
TATDN1   440000 perm   152 sec   (2903 perm/sec)   p_kst 1.011364e-03   p_cons 3.962000e-01   p_joint 2.184091e-03

Joint ci ratio: 1.253399e-01	ci left: 2.032918e-03	ci right 2.306889e-03	k: 975	n:450000
Cons ci ratio: 7.212044e-03	ci left: 3.948904e-01	ci right 3.977509e-01	k: 178344	n:450000
KS ci ratio: 1.840847e-01	ci left: 9.140085e-04	ci right 1.101401e-03	k: 452	n:450000
TATDN1   450000 perm   157 sec   (2870 perm/sec)   p_kst 1.004444e-03   p_cons 3.963200e-01   p_joint 2.166667e-03

Joint ci ratio: 1.239506e-01	ci left: 2.035059e-03	ci right 2.306055e-03	k: 997	n:460000
Cons ci ratio: 7.132742e-03	ci left: 3.949382e-01	ci right 3.977674e-01	k: 182322	n:460000
KS ci ratio: 1.822831e-01	ci left: 9.128068e-04	ci right 1.097919e-03	k: 461	n:460000
TATDN1   460000 perm   162 sec   (2840 perm/sec)   p_kst 1.002174e-03   p_cons 3.963522e-01   p_joint 2.167391e-03

Joint ci ratio: 1.226668e-01	ci left: 2.035062e-03	ci right 2.303049e-03	k: 1018	n:470000
Cons ci ratio: 7.057820e-03	ci left: 3.948608e-01	ci right 3.976596e-01	k: 186242	n:470000
KS ci ratio: 1.801509e-01	ci left: 9.157281e-04	ci right 1.099023e-03	k: 472	n:470000
TATDN1   470000 perm   167 sec   (2810 perm/sec)   p_kst 1.004255e-03   p_cons 3.962596e-01   p_joint 2.165957e-03

Joint ci ratio: 1.214222e-01	ci left: 2.035080e-03	ci right 2.300154e-03	k: 1039	n:480000
Cons ci ratio: 6.984937e-03	ci left: 3.948055e-01	ci right 3.975749e-01	k: 190171	n:480000
KS ci ratio: 1.786469e-01	ci left: 9.125685e-04	ci right 1.093542e-03	k: 480	n:480000
TATDN1   480000 perm   173 sec   (2779 perm/sec)   p_kst 1.000000e-03   p_cons 3.961896e-01   p_joint 2.164583e-03

Joint ci ratio: 1.199317e-01	ci left: 2.045007e-03	ci right 2.307873e-03	k: 1065	n:490000
Cons ci ratio: 6.913410e-03	ci left: 3.948118e-01	ci right 3.975527e-01	k: 194129	n:490000
KS ci ratio: 1.771799e-01	ci left: 9.095440e-04	ci right 1.088277e-03	k: 488	n:490000
TATDN1   490000 perm   178 sec   (2750 perm/sec)   p_kst 9.959184e-04   p_cons 3.961816e-01   p_joint 2.173469e-03

Joint ci ratio: 1.189323e-01	ci left: 2.039031e-03	ci right 2.298791e-03	k: 1083	n:500000
Cons ci ratio: 6.845467e-03	ci left: 3.947180e-01	ci right 3.974312e-01	k: 198037	n:500000
KS ci ratio: 1.752199e-01	ci left: 9.123830e-04	ci right 1.089481e-03	k: 499	n:500000
TATDN1   500000 perm   184 sec   (2722 perm/sec)   p_kst 9.980000e-04   p_cons 3.960740e-01   p_joint 2.166000e-03

Joint ci ratio: 1.181725e-01	ci left: 2.025687e-03	ci right 2.281982e-03	k: 1097	n:510000
Cons ci ratio: 6.779544e-03	ci left: 3.946241e-01	ci right 3.973105e-01	k: 201943	n:510000
KS ci ratio: 1.738351e-01	ci left: 9.094941e-04	ci right 1.084490e-03	k: 507	n:510000
TATDN1   510000 perm   189 sec   (2695 perm/sec)   p_kst 9.941176e-04   p_cons 3.959667e-01   p_joint 2.150980e-03

Joint ci ratio: 1.164861e-01	ci left: 2.046465e-03	ci right 2.301440e-03	k: 1129	n:520000
Cons ci ratio: 6.712870e-03	ci left: 3.947203e-01	ci right 3.973808e-01	k: 205946	n:520000
KS ci ratio: 1.724826e-01	ci left: 9.067216e-04	ci right 1.079685e-03	k: 515	n:520000
TATDN1   520000 perm   195 sec   (2668 perm/sec)   p_kst 9.903846e-04   p_cons 3.960500e-01   p_joint 2.171154e-03

Joint ci ratio: 1.147709e-01	ci left: 2.070149e-03	ci right 2.324021e-03	k: 1163	n:530000
Cons ci ratio: 6.650696e-03	ci left: 3.946283e-01	ci right 3.972634e-01	k: 209851	n:530000
KS ci ratio: 1.692324e-01	ci left: 9.257367e-04	ci right 1.098660e-03	k: 535	n:530000
TATDN1   530000 perm   201 sec   (2641 perm/sec)   p_kst 1.009434e-03   p_cons 3.959453e-01   p_joint 2.194340e-03

Joint ci ratio: 1.132240e-01	ci left: 2.089384e-03	ci right 2.341930e-03	k: 1195	n:540000
Cons ci ratio: 6.590881e-03	ci left: 3.944916e-01	ci right 3.971021e-01	k: 213730	n:540000
KS ci ratio: 1.673690e-01	ci left: 9.298798e-04	ci right 1.101472e-03	k: 547	n:540000
TATDN1   540000 perm   206 sec   (2616 perm/sec)   p_kst 1.012963e-03   p_cons 3.957963e-01   p_joint 2.212963e-03

Joint ci ratio: 1.123819e-01	ci left: 2.083199e-03	ci right 2.333000e-03	k: 1213	n:550000
Cons ci ratio: 6.530738e-03	ci left: 3.945000e-01	ci right 3.970866e-01	k: 217686	n:550000
KS ci ratio: 1.660115e-01	ci left: 9.286538e-04	ci right 1.098491e-03	k: 556	n:550000
TATDN1   550000 perm   212 sec   (2590 perm/sec)   p_kst 1.010909e-03   p_cons 3.957927e-01   p_joint 2.205455e-03

Joint ci ratio: 1.112421e-01	ci left: 2.089393e-03	ci right 2.337230e-03	k: 1238	n:560000
Cons ci ratio: 6.473686e-03	ci left: 3.943993e-01	ci right 3.969625e-01	k: 221581	n:560000
KS ci ratio: 1.643960e-01	ci left: 9.309016e-04	ci right 1.099329e-03	k: 567	n:560000
TATDN1   560000 perm   218 sec   (2564 perm/sec)   p_kst 1.012500e-03   p_cons 3.956804e-01   p_joint 2.210714e-03

Joint ci ratio: 1.098751e-01	ci left: 2.105620e-03	ci right 2.352114e-03	k: 1269	n:570000
Cons ci ratio: 6.416597e-03	ci left: 3.944144e-01	ci right 3.969551e-01	k: 225540	n:570000
KS ci ratio: 1.624061e-01	ci left: 9.381273e-04	ci right 1.105607e-03	k: 581	n:570000
TATDN1   570000 perm   224 sec   (2540 perm/sec)   p_kst 1.019298e-03   p_cons 3.956842e-01   p_joint 2.226316e-03

Joint ci ratio: 1.091051e-01	ci left: 2.099501e-03	ci right 2.343445e-03	k: 1287	n:580000
Cons ci ratio: 6.360350e-03	ci left: 3.944774e-01	ci right 3.969961e-01	k: 229527	n:580000
KS ci ratio: 1.611649e-01	ci left: 9.368416e-04	ci right 1.102690e-03	k: 590	n:580000
TATDN1   580000 perm   231 sec   (2514 perm/sec)   p_kst 1.017241e-03   p_cons 3.957362e-01   p_joint 2.218966e-03

Joint ci ratio: 1.087691e-01	ci left: 2.077105e-03	ci right 2.317656e-03	k: 1295	n:590000
Cons ci ratio: 6.307523e-03	ci left: 3.943892e-01	ci right 3.968864e-01	k: 233426	n:590000
KS ci ratio: 1.606231e-01	ci left: 9.274693e-04	ci right 1.091053e-03	k: 594	n:590000
TATDN1   590000 perm   237 sec   (2491 perm/sec)   p_kst 1.006780e-03   p_cons 3.956373e-01   p_joint 2.194915e-03

Joint ci ratio: 1.078986e-01	ci left: 2.076538e-03	ci right 2.314976e-03	k: 1316	n:600000
Cons ci ratio: 6.254203e-03	ci left: 3.944407e-01	ci right 3.969170e-01	k: 237407	n:600000
KS ci ratio: 1.592902e-01	ci left: 9.280110e-04	ci right 1.090202e-03	k: 604	n:600000
TATDN1   600000 perm   243 sec   (2467 perm/sec)   p_kst 1.006667e-03   p_cons 3.956783e-01   p_joint 2.193333e-03

Joint ci ratio: 1.069285e-01	ci left: 2.080784e-03	ci right 2.317427e-03	k: 1340	n:610000
Cons ci ratio: 6.200852e-03	ci left: 3.945954e-01	ci right 3.970515e-01	k: 241452	n:610000
KS ci ratio: 1.573508e-01	ci left: 9.364140e-04	ci right 1.097893e-03	k: 619	n:610000
TATDN1   610000 perm   250 sec   (2445 perm/sec)   p_kst 1.014754e-03   p_cons 3.958230e-01   p_joint 2.196721e-03

Joint ci ratio: 1.059452e-01	ci left: 2.086472e-03	ci right 2.321444e-03	k: 1365	n:620000
Cons ci ratio: 6.153262e-03	ci left: 3.944019e-01	ci right 3.968378e-01	k: 245284	n:620000
KS ci ratio: 1.553582e-01	ci left: 9.461077e-04	ci right 1.107000e-03	k: 635	n:620000
TATDN1   620000 perm   256 sec   (2422 perm/sec)   p_kst 1.024194e-03   p_cons 3.956194e-01   p_joint 2.201613e-03

Joint ci ratio: 1.052163e-01	ci left: 2.082716e-03	ci right 2.315551e-03	k: 1384	n:630000
Cons ci ratio: 6.106424e-03	ci left: 3.942399e-01	ci right 3.966563e-01	k: 249132	n:630000
KS ci ratio: 1.546311e-01	ci left: 9.402443e-04	ci right 1.099322e-03	k: 641	n:630000
TATDN1   630000 perm   263 sec   (2400 perm/sec)   p_kst 1.017460e-03   p_cons 3.954476e-01   p_joint 2.196825e-03

Joint ci ratio: 1.043162e-01	ci left: 2.086691e-03	ci right 2.317852e-03	k: 1408	n:640000
Cons ci ratio: 6.057945e-03	ci left: 3.942955e-01	ci right 3.966929e-01	k: 253116	n:640000
KS ci ratio: 1.534407e-01	ci left: 9.405758e-04	ci right 1.098372e-03	k: 651	n:640000
TATDN1   640000 perm   269 sec   (2379 perm/sec)   p_kst 1.017188e-03   p_cons 3.954937e-01   p_joint 2.200000e-03

Joint ci ratio: 1.032584e-01	ci left: 2.098046e-03	ci right 2.327965e-03	k: 1437	n:650000
Cons ci ratio: 6.011396e-03	ci left: 3.942864e-01	ci right 3.966653e-01	k: 257059	n:650000
KS ci ratio: 1.513646e-01	ci left: 9.527421e-04	ci right 1.110221e-03	k: 669	n:650000
TATDN1   650000 perm   276 sec   (2358 perm/sec)   p_kst 1.029231e-03   p_cons 3.954754e-01   p_joint 2.210769e-03

Joint ci ratio: 7.628530e-02	ci left: 3.832795e-03	ci right 4.138251e-03	k: 2629	n:660000
Cons ci ratio: 5.966717e-03	ci left: 3.942125e-01	ci right 3.965732e-01	k: 260959	n:660000
KS ci ratio: 1.504692e-01	ci left: 9.499700e-04	ci right 1.105978e-03	k: 677	n:660000
TATDN1   660000 perm   282 sec   (2337 perm/sec)   p_kst 1.025758e-03   p_cons 3.953924e-01   p_joint 3.983333e-03

Joint ci ratio: 1.016796e-01	ci left: 2.100861e-03	ci right 2.327359e-03	k: 1482	n:670000
Cons ci ratio: 5.922575e-03	ci left: 3.941767e-01	ci right 3.965197e-01	k: 264883	n:670000
KS ci ratio: 1.498083e-01	ci left: 9.444100e-04	ci right 1.098763e-03	k: 683	n:670000
TATDN1   670000 perm   289 sec   (2316 perm/sec)   p_kst 1.019403e-03   p_cons 3.953478e-01   p_joint 2.211940e-03

Joint ci ratio: 1.012376e-01	ci left: 2.088597e-03	ci right 2.312736e-03	k: 1495	n:680000
Cons ci ratio: 5.879652e-03	ci left: 3.941215e-01	ci right 3.964471e-01	k: 268793	n:680000
KS ci ratio: 1.491560e-01	ci left: 9.390149e-04	ci right 1.091758e-03	k: 689	n:680000
TATDN1   680000 perm   296 sec   (2296 perm/sec)   p_kst 1.013235e-03   p_cons 3.952838e-01   p_joint 2.198529e-03

Joint ci ratio: 1.005677e-01	ci left: 2.086582e-03	ci right 2.308935e-03	k: 1515	n:690000
Cons ci ratio: 5.839030e-03	ci left: 3.939549e-01	ci right 3.962634e-01	k: 272625	n:690000
KS ci ratio: 1.480868e-01	ci left: 9.393598e-04	ci right 1.090967e-03	k: 699	n:690000
TATDN1   690000 perm   303 sec   (2276 perm/sec)   p_kst 1.013043e-03   p_cons 3.951087e-01   p_joint 2.195652e-03

Joint ci ratio: 9.978084e-02	ci left: 2.090200e-03	ci right 2.311094e-03	k: 1539	n:700000
Cons ci ratio: 5.797417e-03	ci left: 3.939431e-01	ci right 3.962349e-01	k: 276562	n:700000
KS ci ratio: 1.467303e-01	ci left: 9.438270e-04	ci right 1.094637e-03	k: 712	n:700000
TATDN1   700000 perm   310 sec   (2257 perm/sec)   p_kst 1.017143e-03   p_cons 3.950886e-01   p_joint 2.198571e-03

Joint ci ratio: 9.926692e-02	ci left: 2.082735e-03	ci right 2.301640e-03	k: 1555	n:710000
Cons ci ratio: 5.756121e-03	ci left: 3.939781e-01	ci right 3.962538e-01	k: 280532	n:710000
KS ci ratio: 1.460156e-01	ci left: 9.400316e-04	ci right 1.089440e-03	k: 719	n:710000
TATDN1   710000 perm   317 sec   (2236 perm/sec)   p_kst 1.012676e-03   p_cons 3.951155e-01   p_joint 2.190141e-03

Joint ci ratio: 9.872940e-02	ci left: 2.076834e-03	ci right 2.293869e-03	k: 1572	n:720000
Cons ci ratio: 5.716376e-03	ci left: 3.939552e-01	ci right 3.962150e-01	k: 284461	n:720000
KS ci ratio: 1.451116e-01	ci left: 9.390203e-04	ci right 1.087264e-03	k: 728	n:720000
TATDN1   720000 perm   325 sec   (2217 perm/sec)   p_kst 1.011111e-03   p_cons 3.950847e-01   p_joint 2.183333e-03

Joint ci ratio: 9.813867e-02	ci left: 2.073771e-03	ci right 2.289114e-03	k: 1591	n:730000
Cons ci ratio: 5.677167e-03	ci left: 3.939564e-01	ci right 3.962006e-01	k: 288407	n:730000
KS ci ratio: 1.442241e-01	ci left: 9.380395e-04	ci right 1.085144e-03	k: 737	n:730000
TATDN1   730000 perm   332 sec   (2199 perm/sec)   p_kst 1.009589e-03   p_cons 3.950781e-01   p_joint 2.179452e-03

Joint ci ratio: 9.743726e-02	ci left: 2.076068e-03	ci right 2.290021e-03	k: 1614	n:740000
Cons ci ratio: 5.639663e-03	ci left: 3.938805e-01	ci right 3.961095e-01	k: 292296	n:740000
KS ci ratio: 1.429701e-01	ci left: 9.422999e-04	ci right 1.088678e-03	k: 750	n:740000
TATDN1   740000 perm   339 sec   (2181 perm/sec)   p_kst 1.013514e-03   p_cons 3.949946e-01   p_joint 2.181081e-03

Joint ci ratio: 9.692876e-02	ci left: 2.070503e-03	ci right 2.282705e-03	k: 1631	n:750000
Cons ci ratio: 5.602235e-03	ci left: 3.938627e-01	ci right 3.960767e-01	k: 296227	n:750000
KS ci ratio: 1.420277e-01	ci left: 9.425938e-04	ci right 1.087971e-03	k: 760	n:750000
TATDN1   750000 perm   347 sec   (2163 perm/sec)   p_kst 1.013333e-03   p_cons 3.949693e-01   p_joint 2.174667e-03

Joint ci ratio: 9.657498e-02	ci left: 2.058666e-03	ci right 2.268842e-03	k: 1643	n:760000
Cons ci ratio: 5.565006e-03	ci left: 3.938915e-01	ci right 3.960909e-01	k: 300193	n:760000
KS ci ratio: 1.413792e-01	ci left: 9.390751e-04	ci right 1.083193e-03	k: 767	n:760000
TATDN1   760000 perm   354 sec   (2146 perm/sec)   p_kst 1.009211e-03   p_cons 3.949908e-01   p_joint 2.161842e-03

Joint ci ratio: 9.599295e-02	ci left: 2.057279e-03	ci right 2.265976e-03	k: 1663	n:770000
Cons ci ratio: 5.526783e-03	ci left: 3.940688e-01	ci right 3.962540e-01	k: 304274	n:770000
KS ci ratio: 1.405582e-01	ci left: 9.381554e-04	ci right 1.081226e-03	k: 776	n:770000
TATDN1   770000 perm   362 sec   (2128 perm/sec)   p_kst 1.007792e-03   p_cons 3.951610e-01   p_joint 2.159740e-03

Joint ci ratio: 9.511052e-02	ci left: 2.069698e-03	ci right 2.277617e-03	k: 1694	n:780000
Cons ci ratio: 5.491088e-03	ci left: 3.940892e-01	ci right 3.962603e-01	k: 308236	n:780000
KS ci ratio: 1.395736e-01	ci left: 9.397362e-04	ci right 1.081960e-03	k: 787	n:780000
TATDN1   780000 perm   370 sec   (2111 perm/sec)   p_kst 1.008974e-03   p_cons 3.951744e-01   p_joint 2.171795e-03

Joint ci ratio: 9.441658e-02	ci left: 2.074395e-03	ci right 2.281181e-03	k: 1719	n:790000
Cons ci ratio: 5.457636e-03	ci left: 3.939724e-01	ci right 3.961297e-01	k: 312090	n:790000
KS ci ratio: 1.386094e-01	ci left: 9.412804e-04	ci right 1.082673e-03	k: 798	n:790000
TATDN1   790000 perm   377 sec   (2093 perm/sec)   p_kst 1.010127e-03   p_cons 3.950506e-01   p_joint 2.175949e-03

Joint ci ratio: 9.379150e-02	ci left: 2.076538e-03	ci right 2.282093e-03	k: 1742	n:800000
Cons ci ratio: 5.423554e-03	ci left: 3.939673e-01	ci right 3.961110e-01	k: 316031	n:800000
KS ci ratio: 1.377501e-01	ci left: 9.415822e-04	ci right 1.082071e-03	k: 808	n:800000
TATDN1   800000 perm   385 sec   (2075 perm/sec)   p_kst 1.010000e-03   p_cons 3.950387e-01   p_joint 2.177500e-03

Joint ci ratio: 9.328460e-02	ci left: 2.073810e-03	ci right 2.277925e-03	k: 1761	n:810000
Cons ci ratio: 5.389587e-03	ci left: 3.940080e-01	ci right 3.961385e-01	k: 320009	n:810000
KS ci ratio: 1.370742e-01	ci left: 9.394947e-04	ci right 1.078928e-03	k: 816	n:810000
TATDN1   810000 perm   393 sec   (2060 perm/sec)   p_kst 1.007407e-03   p_cons 3.950728e-01   p_joint 2.174074e-03

Joint ci ratio: 9.291664e-02	ci left: 2.065195e-03	ci right 2.267616e-03	k: 1775	n:820000
Cons ci ratio: 5.356810e-03	ci left: 3.939978e-01	ci right 3.961152e-01	k: 323946	n:820000
KS ci ratio: 1.364081e-01	ci left: 9.374597e-04	ci right 1.075860e-03	k: 824	n:820000
TATDN1   820000 perm   401 sec   (2044 perm/sec)   p_kst 1.004878e-03   p_cons 3.950561e-01   p_joint 2.164634e-03

Joint ci ratio: 9.226931e-02	ci left: 2.069736e-03	ci right 2.271113e-03	k: 1800	n:830000
Cons ci ratio: 5.324477e-03	ci left: 3.940011e-01	ci right 3.961057e-01	k: 327894	n:830000
KS ci ratio: 1.351038e-01	ci left: 9.447877e-04	ci right 1.082829e-03	k: 840	n:830000
TATDN1   830000 perm   409 sec   (2027 perm/sec)   p_kst 1.012048e-03   p_cons 3.950530e-01   p_joint 2.168675e-03

Joint ci ratio: 9.166047e-02	ci left: 2.073011e-03	ci right 2.273304e-03	k: 1824	n:840000
Cons ci ratio: 5.293210e-03	ci left: 3.939603e-01	ci right 3.960523e-01	k: 331805	n:840000
KS ci ratio: 1.341500e-01	ci left: 9.473449e-04	ci right 1.084705e-03	k: 852	n:840000
TATDN1   840000 perm   418 sec   (2012 perm/sec)   p_kst 1.014286e-03   p_cons 3.950060e-01   p_joint 2.171429e-03

Joint ci ratio: 9.101421e-02	ci left: 2.078512e-03	ci right 2.277846e-03	k: 1850	n:850000
Cons ci ratio: 5.261581e-03	ci left: 3.940029e-01	ci right 3.960826e-01	k: 335786	n:850000
KS ci ratio: 1.329854e-01	ci left: 9.532572e-04	ci right 1.090180e-03	k: 867	n:850000
TATDN1   850000 perm   426 sec   (1997 perm/sec)   p_kst 1.020000e-03   p_cons 3.950424e-01   p_joint 2.176471e-03

Joint ci ratio: 9.057508e-02	ci left: 2.074798e-03	ci right 2.272765e-03	k: 1868	n:860000
Cons ci ratio: 5.230728e-03	ci left: 3.940247e-01	ci right 3.960923e-01	k: 339750	n:860000
KS ci ratio: 1.320755e-01	ci left: 9.556638e-04	ci right 1.091919e-03	k: 879	n:860000
TATDN1   860000 perm   434 sec   (1982 perm/sec)   p_kst 1.022093e-03   p_cons 3.950581e-01   p_joint 2.172093e-03

Joint ci ratio: 9.014225e-02	ci left: 2.071172e-03	ci right 2.267798e-03	k: 1886	n:870000
Cons ci ratio: 5.199449e-03	ci left: 3.941345e-01	ci right 3.961903e-01	k: 343791	n:870000
KS ci ratio: 1.313314e-01	ci left: 9.557947e-04	ci right 1.091241e-03	k: 889	n:870000
TATDN1   870000 perm   442 sec   (1967 perm/sec)   p_kst 1.021839e-03   p_cons 3.951621e-01   p_joint 2.167816e-03

Joint ci ratio: 8.959779e-02	ci left: 2.073185e-03	ci right 2.268751e-03	k: 1909	n:880000
Cons ci ratio: 5.170752e-03	ci left: 3.940545e-01	ci right 3.960985e-01	k: 347667	n:880000
KS ci ratio: 1.305998e-01	ci left: 9.559247e-04	ci right 1.090576e-03	k: 899	n:880000
TATDN1   880000 perm   451 sec   (1952 perm/sec)   p_kst 1.021591e-03   p_cons 3.950761e-01   p_joint 2.169318e-03

Joint ci ratio: 8.917875e-02	ci left: 2.069663e-03	ci right 2.263937e-03	k: 1927	n:890000
Cons ci ratio: 5.140857e-03	ci left: 3.941313e-01	ci right 3.961638e-01	k: 351681	n:890000
KS ci ratio: 1.303110e-01	ci left: 9.495315e-04	ci right 1.082964e-03	k: 903	n:890000
TATDN1   890000 perm   459 sec   (1937 perm/sec)   p_kst 1.014607e-03   p_cons 3.951472e-01   p_joint 2.165169e-03

Joint ci ratio: 8.888004e-02	ci left: 2.060789e-03	ci right 2.253548e-03	k: 1940	n:900000
Cons ci ratio: 5.112044e-03	ci left: 3.941531e-01	ci right 3.961743e-01	k: 355647	n:900000
KS ci ratio: 1.299524e-01	ci left: 9.443556e-04	ci right 1.076667e-03	k: 908	n:900000
TATDN1   900000 perm   468 sec   (1923 perm/sec)   p_kst 1.008889e-03   p_cons 3.951633e-01   p_joint 2.155556e-03

Joint ci ratio: 8.831296e-02	ci left: 2.065007e-03	ci right 2.256865e-03	k: 1965	n:910000
Cons ci ratio: 5.083395e-03	ci left: 3.942041e-01	ci right 3.962142e-01	k: 359640	n:910000
KS ci ratio: 1.293139e-01	ci left: 9.435475e-04	ci right 1.075047e-03	k: 917	n:910000
TATDN1   910000 perm   477 sec   (1909 perm/sec)   p_kst 1.007692e-03   p_cons 3.952088e-01   p_joint 2.159341e-03

Joint ci ratio: 8.769041e-02	ci left: 2.072327e-03	ci right 2.263438e-03	k: 1993	n:920000
Cons ci ratio: 5.055878e-03	ci left: 3.941921e-01	ci right 3.961912e-01	k: 363576	n:920000
KS ci ratio: 1.285460e-01	ci left: 9.448624e-04	ci right 1.075703e-03	k: 928	n:920000
TATDN1   920000 perm   485 sec   (1896 perm/sec)   p_kst 1.008696e-03   p_cons 3.951913e-01   p_joint 2.166304e-03

Joint ci ratio: 8.716729e-02	ci left: 2.075286e-03	ci right 2.265470e-03	k: 2017	n:930000
Cons ci ratio: 5.029719e-03	ci left: 3.940933e-01	ci right 3.960815e-01	k: 367431	n:930000
KS ci ratio: 1.275880e-01	ci left: 9.492743e-04	ci right 1.079672e-03	k: 942	n:930000
TATDN1   930000 perm   494 sec   (1882 perm/sec)   p_kst 1.012903e-03   p_cons 3.950871e-01   p_joint 2.168817e-03

Joint ci ratio: 8.663217e-02	ci left: 2.079227e-03	ci right 2.268543e-03	k: 2042	n:940000
Cons ci ratio: 5.003382e-03	ci left: 3.940520e-01	ci right 3.960295e-01	k: 371338	n:940000
KS ci ratio: 1.268502e-01	ci left: 9.505053e-04	ci right 1.080261e-03	k: 953	n:940000
TATDN1   940000 perm   503 sec   (1869 perm/sec)   p_kst 1.013830e-03   p_cons 3.950404e-01   p_joint 2.172340e-03

Joint ci ratio: 8.629518e-02	ci left: 2.073818e-03	ci right 2.261870e-03	k: 2058	n:950000
Cons ci ratio: 4.976885e-03	ci left: 3.940662e-01	ci right 3.960334e-01	k: 375297	n:950000
KS ci ratio: 1.265194e-01	ci left: 9.455962e-04	ci right 1.074319e-03	k: 958	n:950000
TATDN1   950000 perm   512 sec   (1856 perm/sec)   p_kst 1.008421e-03   p_cons 3.950495e-01   p_joint 2.166316e-03

Joint ci ratio: 8.594133e-02	ci left: 2.069542e-03	ci right 2.256398e-03	k: 2075	n:960000
Cons ci ratio: 4.950717e-03	ci left: 3.940885e-01	ci right 3.960454e-01	k: 379264	n:960000
KS ci ratio: 1.259300e-01	ci left: 9.448252e-04	ci right 1.072800e-03	k: 967	n:960000
TATDN1   960000 perm   521 sec   (1843 perm/sec)   p_kst 1.007292e-03   p_cons 3.950667e-01   p_joint 2.161458e-03

Joint ci ratio: 8.550996e-02	ci left: 2.069392e-03	ci right 2.255250e-03	k: 2096	n:970000
Cons ci ratio: 4.925097e-03	ci left: 3.940970e-01	ci right 3.960438e-01	k: 383218	n:970000
KS ci ratio: 1.251565e-01	ci left: 9.470675e-04	ci right 1.074499e-03	k: 979	n:970000
TATDN1   970000 perm   530 sec   (1830 perm/sec)   p_kst 1.009278e-03   p_cons 3.950701e-01   p_joint 2.160825e-03

Joint ci ratio: 8.508501e-02	ci left: 2.069247e-03	ci right 2.254123e-03	k: 2117	n:980000
Cons ci ratio: 4.899368e-03	ci left: 3.941543e-01	ci right 3.960912e-01	k: 387220	n:980000
KS ci ratio: 1.245858e-01	ci left: 9.463003e-04	ci right 1.073005e-03	k: 988	n:980000
TATDN1   980000 perm   539 sec   (1817 perm/sec)   p_kst 1.008163e-03   p_cons 3.951224e-01   p_joint 2.160204e-03

Joint ci ratio: 8.460690e-02	ci left: 2.072074e-03	ci right 2.256110e-03	k: 2141	n:990000
Cons ci ratio: 4.873585e-03	ci left: 3.942549e-01	ci right 3.961820e-01	k: 391266	n:990000
KS ci ratio: 1.241474e-01	ci left: 9.435924e-04	ci right 1.069458e-03	k: 995	n:990000
TATDN1   990000 perm   549 sec   (1804 perm/sec)   p_kst 1.005051e-03   p_cons 3.952182e-01   p_joint 2.162626e-03

Joint ci ratio: 8.421472e-02	ci left: 2.070931e-03	ci right 2.253972e-03	k: 2161	n:1000000
Cons ci ratio: 4.848833e-03	ci left: 3.942916e-01	ci right 3.962090e-01	k: 395250	n:1000000
KS ci ratio: 1.237136e-01	ci left: 9.409393e-04	ci right 1.065980e-03	k: 1002	n:1000000
TATDN1   1000000 perm   558 sec   (1792 perm/sec)   p_kst 1.002000e-03   p_cons 3.952500e-01   p_joint 2.161000e-03

Joint ci ratio: 8.371268e-02	ci left: 2.075629e-03	ci right 2.257938e-03	k: 2187	n:1010000
Cons ci ratio: 4.824415e-03	ci left: 3.943315e-01	ci right 3.962394e-01	k: 399238	n:1010000
KS ci ratio: 1.231015e-01	ci left: 9.412185e-04	ci right 1.065632e-03	k: 1012	n:1010000
TATDN1   1010000 perm   568 sec   (1780 perm/sec)   p_kst 1.001980e-03   p_cons 3.952851e-01   p_joint 2.165347e-03

Joint ci ratio: 8.338955e-02	ci left: 2.071598e-03	ci right 2.252816e-03	k: 2204	n:1020000
Cons ci ratio: 4.801986e-03	ci left: 3.942089e-01	ci right 3.961074e-01	k: 403061	n:1020000
KS ci ratio: 1.227991e-01	ci left: 9.367419e-04	ci right 1.060238e-03	k: 1017	n:1020000
TATDN1   1020000 perm   577 sec   (1768 perm/sec)   p_kst 9.970588e-04   p_cons 3.951578e-01   p_joint 2.160784e-03

Joint ci ratio: 8.290204e-02	ci left: 2.076204e-03	ci right 2.256711e-03	k: 2230	n:1030000
Cons ci ratio: 4.778799e-03	ci left: 3.941955e-01	ci right 3.960847e-01	k: 406994	n:1030000
KS ci ratio: 1.218449e-01	ci left: 9.427062e-04	ci right 1.065953e-03	k: 1033	n:1030000
TATDN1   1030000 perm   587 sec   (1756 perm/sec)   p_kst 1.002913e-03   p_cons 3.951398e-01   p_joint 2.165049e-03

Joint ci ratio: 8.249627e-02	ci left: 2.076957e-03	ci right 2.256603e-03	k: 2252	n:1040000
Cons ci ratio: 4.756270e-03	ci left: 3.941497e-01	ci right 3.960298e-01	k: 410893	n:1040000
KS ci ratio: 1.212019e-01	ci left: 9.438971e-04	ci right 1.066602e-03	k: 1044	n:1040000
TATDN1   1040000 perm   596 sec   (1744 perm/sec)   p_kst 1.003846e-03   p_cons 3.950894e-01   p_joint 2.165385e-03

Joint ci ratio: 8.213260e-02	ci left: 2.075831e-03	ci right 2.254552e-03	k: 2272	n:1050000
Cons ci ratio: 4.732783e-03	ci left: 3.942333e-01	ci right 3.961044e-01	k: 414927	n:1050000
KS ci ratio: 1.209709e-01	ci left: 9.386016e-04	ci right 1.060369e-03	k: 1048	n:1050000
TATDN1   1050000 perm   606 sec   (1732 perm/sec)   p_kst 9.980952e-04   p_cons 3.951686e-01   p_joint 2.163810e-03

Joint ci ratio: 8.170230e-02	ci left: 2.078426e-03	ci right 2.256387e-03	k: 2296	n:1060000
Cons ci ratio: 4.709892e-03	ci left: 3.942899e-01	ci right 3.961522e-01	k: 418934	n:1060000
KS ci ratio: 1.203984e-01	ci left: 9.388961e-04	ci right 1.060084e-03	k: 1058	n:1060000
TATDN1   1060000 perm   616 sec   (1721 perm/sec)   p_kst 9.981132e-04   p_cons 3.952208e-01   p_joint 2.166038e-03

Joint ci ratio: 8.122611e-02	ci left: 2.083721e-03	ci right 2.261047e-03	k: 2323	n:1070000
Cons ci ratio: 4.688090e-03	ci left: 3.942679e-01	ci right 3.961215e-01	k: 422858	n:1070000
KS ci ratio: 1.196660e-01	ci left: 9.419062e-04	ci right 1.062690e-03	k: 1071	n:1070000
TATDN1   1070000 perm   626 sec   (1710 perm/sec)   p_kst 1.000935e-03   p_cons 3.951944e-01   p_joint 2.171028e-03

Joint ci ratio: 8.087890e-02	ci left: 2.082571e-03	ci right 2.259005e-03	k: 2343	n:1080000
Cons ci ratio: 4.666488e-03	ci left: 3.942565e-01	ci right 3.961015e-01	k: 426793	n:1080000
KS ci ratio: 1.189468e-01	ci left: 9.448627e-04	ci right 1.065247e-03	k: 1084	n:1080000
TATDN1   1080000 perm   636 sec   (1699 perm/sec)   p_kst 1.003704e-03   p_cons 3.951787e-01   p_joint 2.169444e-03

Joint ci ratio: 8.048495e-02	ci left: 2.084140e-03	ci right 2.259807e-03	k: 2366	n:1090000
Cons ci ratio: 4.645308e-03	ci left: 3.942325e-01	ci right 3.960690e-01	k: 430714	n:1090000
KS ci ratio: 1.183483e-01	ci left: 9.459865e-04	ci right 1.065865e-03	k: 1095	n:1090000
TATDN1   1090000 perm   646 sec   (1687 perm/sec)   p_kst 1.004587e-03   p_cons 3.951505e-01   p_joint 2.170642e-03

Joint ci ratio: 8.024826e-02	ci left: 2.077664e-03	ci right 2.252246e-03	k: 2380	n:1100000
Cons ci ratio: 4.623753e-03	ci left: 3.942771e-01	ci right 3.961053e-01	k: 434710	n:1100000
KS ci ratio: 1.180796e-01	ci left: 9.417976e-04	ci right 1.060855e-03	k: 1100	n:1100000
TATDN1   1100000 perm   656 sec   (1676 perm/sec)   p_kst 1.000000e-03   p_cons 3.951909e-01   p_joint 2.163636e-03

Joint ci ratio: 7.983014e-02	ci left: 2.081018e-03	ci right 2.254929e-03	k: 2405	n:1110000
Cons ci ratio: 4.601273e-03	ci left: 3.944479e-01	ci right 3.962679e-01	k: 438847	n:1110000
KS ci ratio: 1.173884e-01	ci left: 9.446798e-04	ci right 1.063354e-03	k: 1113	n:1110000
TATDN1   1110000 perm   666 sec   (1666 perm/sec)   p_kst 1.002703e-03   p_cons 3.953577e-01   p_joint 2.166667e-03

Joint ci ratio: 7.959916e-02	ci left: 2.074688e-03	ci right 2.247545e-03	k: 2419	n:1120000
Cons ci ratio: 4.580126e-03	ci left: 3.945104e-01	ci right 3.963223e-01	k: 442866	n:1120000
KS ci ratio: 1.171785e-01	ci left: 9.397117e-04	ci right 1.057536e-03	k: 1117	n:1120000
TATDN1   1120000 perm   677 sec   (1655 perm/sec)   p_kst 9.973214e-04   p_cons 3.954161e-01   p_joint 2.159821e-03

Joint ci ratio: 7.922353e-02	ci left: 2.076278e-03	ci right 2.248413e-03	k: 2442	n:1130000
Cons ci ratio: 4.560078e-03	ci left: 3.944868e-01	ci right 3.962907e-01	k: 446789	n:1130000
KS ci ratio: 1.166063e-01	ci left: 9.408456e-04	ci right 1.058197e-03	k: 1128	n:1130000
TATDN1   1130000 perm   687 sec   (1645 perm/sec)   p_kst 9.982301e-04   p_cons 3.953885e-01   p_joint 2.161062e-03

Joint ci ratio: 7.883714e-02	ci left: 2.078702e-03	ci right 2.250159e-03	k: 2466	n:1140000
Cons ci ratio: 4.540191e-03	ci left: 3.944742e-01	ci right 3.962702e-01	k: 450724	n:1140000
KS ci ratio: 1.157884e-01	ci left: 9.462198e-04	ci right 1.063357e-03	k: 1144	n:1140000
TATDN1   1140000 perm   698 sec   (1634 perm/sec)   p_kst 1.003509e-03   p_cons 3.953719e-01   p_joint 2.163158e-03

Joint ci ratio: 7.855122e-02	ci left: 2.075970e-03	ci right 2.246553e-03	k: 2484	n:1150000
Cons ci ratio: 4.520052e-03	ci left: 3.945158e-01	ci right 3.963039e-01	k: 454721	n:1150000
KS ci ratio: 1.153360e-01	ci left: 9.455917e-04	ci right 1.062162e-03	k: 1153	n:1150000
TATDN1   1150000 perm   708 sec   (1624 perm/sec)   p_kst 1.002609e-03   p_cons 3.954096e-01   p_joint 2.160000e-03

Joint ci ratio: 7.822143e-02	ci left: 2.075823e-03	ci right 2.245644e-03	k: 2505	n:1160000
Cons ci ratio: 4.500431e-03	ci left: 3.945299e-01	ci right 3.963103e-01	k: 458687	n:1160000
KS ci ratio: 1.148889e-01	ci left: 9.449753e-04	ci right 1.060988e-03	k: 1162	n:1160000
TATDN1   1160000 perm   719 sec   (1614 perm/sec)   p_kst 1.001724e-03   p_cons 3.954198e-01   p_joint 2.159483e-03

Joint ci ratio: 7.772639e-02	ci left: 2.084898e-03	ci right 2.254334e-03	k: 2537	n:1170000
Cons ci ratio: 4.480934e-03	ci left: 3.945575e-01	ci right 3.963302e-01	k: 462669	n:1170000
KS ci ratio: 1.141064e-01	ci left: 9.501823e-04	ci right 1.065986e-03	k: 1178	n:1170000
TATDN1   1170000 perm   729 sec   (1604 perm/sec)   p_kst 1.006838e-03   p_cons 3.954436e-01   p_joint 2.168376e-03

Joint ci ratio: 7.731605e-02	ci left: 2.089667e-03	ci right 2.258554e-03	k: 2564	n:1180000
Cons ci ratio: 4.462274e-03	ci left: 3.945219e-01	ci right 3.962871e-01	k: 466577	n:1180000
KS ci ratio: 1.135300e-01	ci left: 9.520099e-04	ci right 1.067411e-03	k: 1190	n:1180000
TATDN1   1180000 perm   740 sec   (1595 perm/sec)   p_kst 1.008475e-03   p_cons 3.954042e-01   p_joint 2.172881e-03

Joint ci ratio: 7.700151e-02	ci left: 2.089414e-03	ci right 2.257562e-03	k: 2585	n:1190000
Cons ci ratio: 4.443962e-03	ci left: 3.944743e-01	ci right 3.962321e-01	k: 470470	n:1190000
KS ci ratio: 1.131035e-01	ci left: 9.513585e-04	ci right 1.066219e-03	k: 1199	n:1190000
TATDN1   1190000 perm   751 sec   (1585 perm/sec)   p_kst 1.007563e-03   p_cons 3.953529e-01   p_joint 2.172269e-03

Joint ci ratio: 7.670552e-02	ci left: 2.088348e-03	ci right 2.255736e-03	k: 2605	n:1200000
Cons ci ratio: 4.425349e-03	ci left: 3.944842e-01	ci right 3.962346e-01	k: 474431	n:1200000
KS ci ratio: 1.126352e-01	ci left: 9.515286e-04	ci right 1.065902e-03	k: 1209	n:1200000
TATDN1   1200000 perm   761 sec   (1576 perm/sec)   p_kst 1.007500e-03   p_cons 3.953592e-01   p_joint 2.170833e-03

Joint ci ratio: 7.650055e-02	ci left: 2.082438e-03	ci right 2.248885e-03	k: 2619	n:1210000
Cons ci ratio: 4.407258e-03	ci left: 3.944626e-01	ci right 3.962057e-01	k: 478354	n:1210000
KS ci ratio: 1.124034e-01	ci left: 9.476805e-04	ci right 1.061341e-03	k: 1214	n:1210000
TATDN1   1210000 perm   772 sec   (1566 perm/sec)   p_kst 1.003306e-03   p_cons 3.953339e-01   p_joint 2.164463e-03

Joint ci ratio: 7.622474e-02	ci left: 2.080645e-03	ci right 2.246323e-03	k: 2638	n:1220000
Cons ci ratio: 4.388627e-03	ci left: 3.945240e-01	ci right 3.962601e-01	k: 482378	n:1220000
KS ci ratio: 1.119895e-01	ci left: 9.470827e-04	ci right 1.060226e-03	k: 1223	n:1220000
TATDN1   1220000 perm   783 sec   (1557 perm/sec)   p_kst 1.002459e-03   p_cons 3.953918e-01   p_joint 2.162295e-03

Joint ci ratio: 7.593759e-02	ci left: 2.079680e-03	ci right 2.244630e-03	k: 2658	n:1230000
Cons ci ratio: 4.370460e-03	ci left: 3.945593e-01	ci right 3.962883e-01	k: 486371	n:1230000
KS ci ratio: 1.116254e-01	ci left: 9.457049e-04	ci right 1.058292e-03	k: 1231	n:1230000
TATDN1   1230000 perm   795 sec   (1548 perm/sec)   p_kst 1.000813e-03   p_cons 3.954236e-01   p_joint 2.160976e-03

Joint ci ratio: 7.558300e-02	ci left: 2.082688e-03	ci right 2.247071e-03	k: 2683	n:1240000
Cons ci ratio: 4.352444e-03	ci left: 3.946021e-01	ci right 3.963242e-01	k: 490374	n:1240000
KS ci ratio: 1.107741e-01	ci left: 9.529749e-04	ci right 1.065506e-03	k: 1250	n:1240000
TATDN1   1240000 perm   806 sec   (1539 perm/sec)   p_kst 1.008065e-03   p_cons 3.954629e-01   p_joint 2.163710e-03

Joint ci ratio: 7.530301e-02	ci left: 2.081724e-03	ci right 2.245396e-03	k: 2703	n:1250000
Cons ci ratio: 4.334423e-03	ci left: 3.946691e-01	ci right 3.963842e-01	k: 494408	n:1250000
KS ci ratio: 1.103340e-01	ci left: 9.531299e-04	ci right 1.065203e-03	k: 1260	n:1250000
TATDN1   1250000 perm   817 sec   (1530 perm/sec)   p_kst 1.008000e-03   p_cons 3.955264e-01   p_joint 2.162400e-03

Joint ci ratio: 7.503991e-02	ci left: 2.079998e-03	ci right 2.242938e-03	k: 2722	n:1260000
Cons ci ratio: 4.316876e-03	ci left: 3.947072e-01	ci right 3.964155e-01	k: 498407	n:1260000
KS ci ratio: 1.100726e-01	ci left: 9.501959e-04	ci right 1.061642e-03	k: 1266	n:1260000
TATDN1   1260000 perm   828 sec   (1521 perm/sec)   p_kst 1.004762e-03   p_cons 3.955611e-01   p_joint 2.160317e-03

Joint ci ratio: 7.471131e-02	ci left: 2.082164e-03	ci right 2.244529e-03	k: 2746	n:1270000
Cons ci ratio: 4.300545e-03	ci left: 3.946329e-01	ci right 3.963345e-01	k: 502264	n:1270000
KS ci ratio: 1.095549e-01	ci left: 9.519034e-04	ci right 1.062991e-03	k: 1278	n:1270000
TATDN1   1270000 perm   840 sec   (1512 perm/sec)   p_kst 1.006299e-03   p_cons 3.954835e-01   p_joint 2.162205e-03

Joint ci ratio: 7.429302e-02	ci left: 2.089665e-03	ci right 2.251663e-03	k: 2777	n:1280000
Cons ci ratio: 4.284398e-03	ci left: 3.945599e-01	ci right 3.962547e-01	k: 506121	n:1280000
KS ci ratio: 1.091291e-01	ci left: 9.520655e-04	ci right 1.062712e-03	k: 1288	n:1280000
TATDN1   1280000 perm   851 sec   (1504 perm/sec)   p_kst 1.006250e-03   p_cons 3.954070e-01   p_joint 2.169531e-03

Joint ci ratio: 7.398733e-02	ci left: 2.090965e-03	ci right 2.252368e-03	k: 2800	n:1290000
Cons ci ratio: 4.267912e-03	ci left: 3.945460e-01	ci right 3.962343e-01	k: 510053	n:1290000
KS ci ratio: 1.087502e-01	ci left: 9.514718e-04	ci right 1.061641e-03	k: 1297	n:1290000
TATDN1   1290000 perm   863 sec   (1495 perm/sec)   p_kst 1.005426e-03   p_cons 3.953899e-01   p_joint 2.170543e-03

Joint ci ratio: 7.373773e-02	ci left: 2.089226e-03	ci right 2.249928e-03	k: 2819	n:1300000
Cons ci ratio: 4.251595e-03	ci left: 3.945348e-01	ci right 3.962165e-01	k: 513988	n:1300000
KS ci ratio: 1.084999e-01	ci left: 9.486427e-04	ci right 1.058215e-03	k: 1303	n:1300000
TATDN1   1300000 perm   874 sec   (1487 perm/sec)   p_kst 1.002308e-03   p_cons 3.953754e-01   p_joint 2.168462e-03

Joint ci ratio: 7.351661e-02	ci left: 2.086016e-03	ci right 2.245969e-03	k: 2836	n:1310000
Cons ci ratio: 4.235165e-03	ci left: 3.945572e-01	ci right 3.962325e-01	k: 517967	n:1310000
KS ci ratio: 1.081686e-01	ci left: 9.473425e-04	ci right 1.056410e-03	k: 1311	n:1310000
TATDN1   1310000 perm   886 sec   (1478 perm/sec)   p_kst 1.000763e-03   p_cons 3.953947e-01   p_joint 2.164885e-03

Joint ci ratio: 7.324604e-02	ci left: 2.085830e-03	ci right 2.245155e-03	k: 2857	n:1320000
Cons ci ratio: 4.219386e-03	ci left: 3.945271e-01	ci right 3.961960e-01	k: 521877	n:1320000
KS ci ratio: 1.075959e-01	ci left: 9.504856e-04	ci right 1.059299e-03	k: 1325	n:1320000
TATDN1   1320000 perm   898 sec   (1470 perm/sec)   p_kst 1.003788e-03   p_cons 3.953614e-01   p_joint 2.164394e-03

Joint ci ratio: 7.299113e-02	ci left: 2.084910e-03	ci right 2.243586e-03	k: 2877	n:1330000
Cons ci ratio: 4.203809e-03	ci left: 3.944945e-01	ci right 3.961571e-01	k: 525783	n:1330000
KS ci ratio: 1.072327e-01	ci left: 9.499242e-04	ci right 1.058283e-03	k: 1334	n:1330000
TATDN1   1330000 perm   910 sec   (1462 perm/sec)   p_kst 1.003008e-03   p_cons 3.953256e-01   p_joint 2.163158e-03

Joint ci ratio: 7.267607e-02	ci left: 2.087668e-03	ci right 2.245840e-03	k: 2902	n:1340000
Cons ci ratio: 4.187723e-03	ci left: 3.945399e-01	ci right 3.961963e-01	k: 529793	n:1340000
KS ci ratio: 1.065956e-01	ci left: 9.544564e-04	ci right 1.062644e-03	k: 1350	n:1340000
TATDN1   1340000 perm   922 sec   (1454 perm/sec)   p_kst 1.007463e-03   p_cons 3.953679e-01   p_joint 2.165672e-03

Joint ci ratio: 7.246433e-02	ci left: 2.084568e-03	ci right 2.242025e-03	k: 2919	n:1350000
Cons ci ratio: 4.172085e-03	ci left: 3.945544e-01	ci right 3.962046e-01	k: 533762	n:1350000
KS ci ratio: 1.063206e-01	ci left: 9.524334e-04	ci right 1.060096e-03	k: 1357	n:1350000
TATDN1   1350000 perm   934 sec   (1446 perm/sec)   p_kst 1.005185e-03   p_cons 3.953793e-01   p_joint 2.162222e-03

Joint ci ratio: 7.214374e-02	ci left: 2.088012e-03	ci right 2.245002e-03	k: 2945	n:1360000
Cons ci ratio: 4.156161e-03	ci left: 3.946215e-01	ci right 3.962657e-01	k: 537803	n:1360000
KS ci ratio: 1.060089e-01	ci left: 9.511563e-04	ci right 1.058340e-03	k: 1365	n:1360000
TATDN1   1360000 perm   946 sec   (1438 perm/sec)   p_kst 1.003676e-03   p_cons 3.954434e-01   p_joint 2.165441e-03

Joint ci ratio: 7.192444e-02	ci left: 2.085673e-03	ci right 2.241991e-03	k: 2963	n:1370000
Cons ci ratio: 4.141005e-03	ci left: 3.946198e-01	ci right 3.962580e-01	k: 541751	n:1370000
KS ci ratio: 1.056999e-01	ci left: 9.498984e-04	ci right 1.056609e-03	k: 1373	n:1370000
TATDN1   1370000 perm   958 sec   (1430 perm/sec)   p_kst 1.002190e-03   p_cons 3.954387e-01   p_joint 2.162774e-03

Joint ci ratio: 7.165898e-02	ci left: 2.086215e-03	ci right 2.241973e-03	k: 2985	n:1380000
Cons ci ratio: 4.126408e-03	ci left: 3.945725e-01	ci right 3.962047e-01	k: 545636	n:1380000
KS ci ratio: 1.052793e-01	ci left: 9.507758e-04	ci right 1.057133e-03	k: 1384	n:1380000
TATDN1   1380000 perm   970 sec   (1422 perm/sec)   p_kst 1.002899e-03   p_cons 3.953884e-01   p_joint 2.163043e-03

Joint ci ratio: 7.140834e-02	ci left: 2.086044e-03	ci right 2.241222e-03	k: 3006	n:1390000
Cons ci ratio: 4.111104e-03	ci left: 3.946259e-01	ci right 3.962523e-01	k: 549660	n:1390000
KS ci ratio: 1.049389e-01	ci left: 9.502403e-04	ci right 1.056173e-03	k: 1393	n:1390000
TATDN1   1390000 perm   982 sec   (1415 perm/sec)   p_kst 1.002158e-03   p_cons 3.954388e-01   p_joint 2.162590e-03

Joint ci ratio: 7.119566e-02	ci left: 2.083772e-03	ci right 2.238299e-03	k: 3024	n:1400000
Cons ci ratio: 4.096208e-03	ci left: 3.946506e-01	ci right 3.962712e-01	k: 553645	n:1400000
KS ci ratio: 1.046392e-01	ci left: 9.490173e-04	ci right 1.054493e-03	k: 1401	n:1400000
TATDN1   1400000 perm   995 sec   (1408 perm/sec)   p_kst 1.000714e-03   p_cons 3.954607e-01   p_joint 2.160000e-03

Joint ci ratio: 7.096150e-02	ci left: 2.082925e-03	ci right 2.236861e-03	k: 3044	n:1410000
Cons ci ratio: 4.081431e-03	ci left: 3.946800e-01	ci right 3.962949e-01	k: 557637	n:1410000
KS ci ratio: 1.040469e-01	ci left: 9.533382e-04	ci right 1.058658e-03	k: 1417	n:1410000
TATDN1   1410000 perm   1007 sec   (1400 perm/sec)   p_kst 1.004965e-03   p_cons 3.954872e-01   p_joint 2.158865e-03

Joint ci ratio: 7.063732e-02	ci left: 2.087626e-03	ci right 2.241176e-03	k: 3072	n:1420000
Cons ci ratio: 4.066854e-03	ci left: 3.947041e-01	ci right 3.963132e-01	k: 561622	n:1420000
KS ci ratio: 1.035008e-01	ci left: 9.569139e-04	ci right 1.062040e-03	k: 1432	n:1420000
TATDN1   1420000 perm   1020 sec   (1393 perm/sec)   p_kst 1.008451e-03   p_cons 3.955085e-01   p_joint 2.163380e-03

Joint ci ratio: 7.029482e-02	ci left: 2.093637e-03	ci right 2.246852e-03	k: 3102	n:1430000
Cons ci ratio: 4.052681e-03	ci left: 3.946985e-01	ci right 3.963020e-01	k: 565565	n:1430000
KS ci ratio: 1.030344e-01	ci left: 9.590783e-04	ci right 1.063939e-03	k: 1445	n:1430000
TATDN1   1430000 perm   1032 sec   (1385 perm/sec)   p_kst 1.010490e-03   p_cons 3.955000e-01   p_joint 2.169231e-03

Joint ci ratio: 7.013697e-02	ci left: 2.088649e-03	ci right 2.241142e-03	k: 3116	n:1440000
Cons ci ratio: 4.038790e-03	ci left: 3.946770e-01	ci right 3.962749e-01	k: 569485	n:1440000
KS ci ratio: 1.028569e-01	ci left: 9.558008e-04	ci right 1.060112e-03	k: 1450	n:1440000
TATDN1   1440000 perm   1045 sec   (1378 perm/sec)   p_kst 1.006944e-03   p_cons 3.954757e-01   p_joint 2.163889e-03

Joint ci ratio: 6.994659e-02	ci left: 2.085764e-03	ci right 2.237615e-03	k: 3133	n:1450000
Cons ci ratio: 4.024588e-03	ci left: 3.947095e-01	ci right 3.963019e-01	k: 573483	n:1450000
KS ci ratio: 1.025394e-01	ci left: 9.552565e-04	ci right 1.059167e-03	k: 1459	n:1450000
TATDN1   1450000 perm   1058 sec   (1371 perm/sec)   p_kst 1.006207e-03   p_cons 3.955055e-01   p_joint 2.160690e-03

Joint ci ratio: 6.976886e-02	ci left: 2.082245e-03	ci right 2.233440e-03	k: 3149	n:1460000
Cons ci ratio: 4.010839e-03	ci left: 3.947054e-01	ci right 3.962923e-01	k: 577428	n:1460000
KS ci ratio: 1.022946e-01	ci left: 9.533853e-04	ci right 1.056830e-03	k: 1466	n:1460000
TATDN1   1460000 perm   1070 sec   (1364 perm/sec)   p_kst 1.004110e-03   p_cons 3.954986e-01   p_joint 2.156849e-03

Joint ci ratio: 6.959247e-02	ci left: 2.078775e-03	ci right 2.229320e-03	k: 3165	n:1470000
Cons ci ratio: 3.997105e-03	ci left: 3.947162e-01	ci right 3.962978e-01	k: 581395	n:1470000
KS ci ratio: 1.020515e-01	ci left: 9.515399e-04	ci right 1.054524e-03	k: 1473	n:1470000
TATDN1   1470000 perm   1083 sec   (1357 perm/sec)   p_kst 1.002041e-03   p_cons 3.955068e-01   p_joint 2.153061e-03

Joint ci ratio: 6.938465e-02	ci left: 2.077343e-03	ci right 2.227318e-03	k: 3184	n:1480000
Cons ci ratio: 3.983720e-03	ci left: 3.947020e-01	ci right 3.962782e-01	k: 585325	n:1480000
KS ci ratio: 1.017071e-01	ci left: 9.516952e-04	ci right 1.054328e-03	k: 1483	n:1480000
TATDN1   1480000 perm   1096 sec   (1350 perm/sec)   p_kst 1.002027e-03   p_cons 3.954899e-01   p_joint 2.151351e-03

Joint ci ratio: 6.913544e-02	ci left: 2.078571e-03	ci right 2.228073e-03	k: 3207	n:1490000
Cons ci ratio: 3.970027e-03	ci left: 3.947409e-01	ci right 3.963118e-01	k: 589334	n:1490000
KS ci ratio: 1.013322e-01	ci left: 9.525031e-04	ci right 1.054822e-03	k: 1494	n:1490000
TATDN1   1490000 perm   1109 sec   (1343 perm/sec)   p_kst 1.002685e-03   p_cons 3.955262e-01   p_joint 2.152349e-03

Joint ci ratio: 6.885686e-02	ci left: 2.081748e-03	ci right 2.230852e-03	k: 3233	n:1500000
Cons ci ratio: 3.956746e-03	ci left: 3.947467e-01	ci right 3.963124e-01	k: 593294	n:1500000
KS ci ratio: 1.007940e-01	ci left: 9.565502e-04	ci right 1.058725e-03	k: 1510	n:1500000
TATDN1   1500000 perm   1123 sec   (1336 perm/sec)   p_kst 1.006667e-03   p_cons 3.955293e-01   p_joint 2.155333e-03

Joint ci ratio: 6.857109e-02	ci left: 2.085535e-03	ci right 2.234266e-03	k: 3260	n:1510000
Cons ci ratio: 3.943525e-03	ci left: 3.947610e-01	ci right 3.963215e-01	k: 597267	n:1510000
KS ci ratio: 1.004291e-01	ci left: 9.573169e-04	ci right 1.059182e-03	k: 1521	n:1510000
TATDN1   1510000 perm   1136 sec   (1329 perm/sec)   p_kst 1.007285e-03   p_cons 3.955411e-01   p_joint 2.158940e-03

Joint ci ratio: 6.842454e-02	ci left: 2.080867e-03	ci right 2.228935e-03	k: 3274	n:1520000
Cons ci ratio: 3.930648e-03	ci left: 3.947495e-01	ci right 3.963048e-01	k: 601201	n:1520000
KS ci ratio: 1.002976e-01	ci left: 9.535842e-04	ci right 1.054911e-03	k: 1525	n:1520000
TATDN1   1520000 perm   1149 sec   (1323 perm/sec)   p_kst 1.003289e-03   p_cons 3.955270e-01   p_joint 2.153947e-03

Joint ci ratio: 6.823736e-02	ci left: 2.078830e-03	ci right 2.226332e-03	k: 3292	n:1530000
Cons ci ratio: 3.917863e-03	ci left: 3.947421e-01	ci right 3.962923e-01	k: 605141	n:1530000
KS ci ratio: 1.000032e-01	ci left: 9.530867e-04	ci right 1.054046e-03	k: 1534	n:1530000
TATDN1   1530000 perm   1163 sec   (1316 perm/sec)   p_kst 1.002614e-03   p_cons 3.955170e-01   p_joint 2.151634e-03

Joint ci ratio: 6.803111e-02	ci left: 2.078097e-03	ci right 2.225084e-03	k: 3312	n:1540000
Cons ci ratio: 3.904996e-03	ci left: 3.947601e-01	ci right 3.963053e-01	k: 609120	n:1540000
KS ci ratio: 9.974366e-02	ci left: 9.519628e-04	ci right 1.052526e-03	k: 1542	n:1540000
TATDN1   1540000 perm   1176 sec   (1310 perm/sec)   p_kst 1.001299e-03   p_cons 3.955325e-01   p_joint 2.150649e-03

Outputting figure to mutsig2_images.part000000000171/TATDN1.2_942_1540000_0.0010013_0.39553_0.0021506.png
                gene_name: TATDN1
               theta_stop: 0.100 
                    nperm: 1540000 
                     p_ks: 0.0010 
        ci_ks_bounds_left: 0.00095 
       ci_ks_bounds_right: 0.0011 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.0022 
     ci_joint_bounds_left: 0.0021 
    ci_joint_bounds_right: 0.0022 

Current progress: 94 percent done.
TATDN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.607365e-02	ci left: 8.490671e-01	ci right 8.629248e-01	k: 8561	n:10000
Cons ci ratio: 6.157470e-02	ci left: 2.794346e-01	ci right 2.972888e-01	k: 2883	n:10000
KS ci ratio: 6.515890e-03	ci left: 9.698435e-01	ci right 9.762769e-01	k: 9732	n:10000
TATDN3   10000 perm   1 sec   (6849 perm/sec)   p_kst 9.732000e-01   p_cons 2.883000e-01   p_joint 8.561000e-01

Outputting figure to mutsig2_images.part000000000171/TATDN3.2_886_10000_0.9732_0.2883_0.8561.png
                gene_name: TATDN3
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 96 percent done.
TAX1BP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.748669e-03	ci left: 9.678372e-01	ci right 9.744845e-01	k: 9713	n:10000
Cons ci ratio: 2.224561e-02	ci left: 7.478628e-01	ci right 7.647876e-01	k: 7564	n:10000
KS ci ratio: 3.218348e-02	ci left: 5.876103e-01	ci right 6.069330e-01	k: 5973	n:10000
TAX1BP1   10000 perm   2 sec   (5994 perm/sec)   p_kst 5.973000e-01   p_cons 7.564000e-01   p_joint 9.713000e-01

Outputting figure to mutsig2_images.part000000000171/TAX1BP1.2_2434_10000_0.5973_0.7564_0.9713.png
                gene_name: TAX1BP1
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.97 

Current progress: 98 percent done.
TBC1D2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.447022e-02	ci left: 3.318056e-01	ci right 3.504870e-01	k: 3411	n:10000
Cons ci ratio: 9.647308e-02	ci left: 1.348219e-01	ci right 1.485876e-01	k: 1416	n:10000
KS ci ratio: 4.743559e-02	ci left: 3.960547e-01	ci right 4.154003e-01	k: 4057	n:10000
TBC1D2B   10000 perm   2 sec   (5813 perm/sec)   p_kst 4.057000e-01   p_cons 1.416000e-01   p_joint 3.411000e-01

Outputting figure to mutsig2_images.part000000000171/TBC1D2B.2_2944_10000_0.4057_0.1416_0.3411.png
                gene_name: TBC1D2B
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000171
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 171 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1417>
Subject: Job 8004609: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1417>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000172> was used as the working directory.
Started at Sun Nov 11 15:21:27 2012
Results reported at Sun Nov 11 15:30:53 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000172.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000172.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 172  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000172.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    705.31 sec.
    Max Memory :      4763 MB
    Max Swap   :      7125 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
172
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 172
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 172: processing genes 15471 - 15561
Calculating significance of each gene.
Using projection method.
15471	TBC1D4	1
15472	TBC1D5	7.750072e-01
15473	TBC1D7	6.839292e-02
15474	TBC1D8	9.732914e-01
15475	TBC1D8B	9.142907e-01
15476	TBC1D9	9.565865e-01
15477	TBC1D9B	1
15478	TBCA	1
15479	TBCB	2.755333e-01
15480	TBCC	1
15481	TBCCD1	1
15482	TBCD	9.703875e-01
15483	TBCE	8.811165e-01
15484	TBCEL	8.519194e-01
15485	TBCK	3.967701e-01
15486	TBK1	5.185250e-01
15487	TBKBP1	1
15488	TBL1X	1
15489	TBL1XR1	1
15490	TBL1Y	7.120774e-01
15491	TBL2	4.369778e-01
15492	TBL3	8.336130e-01
15493	TBP	4.982180e-01
15494	TBPL1	1
15495	TBPL2	5.770059e-01
15496	TBR1	1.358215e-01
15497	TBRG1	1
15498	TBRG4	1
15499	TBX1	1
15500	TBX10	8.248794e-01
15501	TBX15	6.238989e-01
15502	TBX18	7.432943e-01
15503	TBX19	1
15504	TBX2	1.918972e-01
15505	TBX20	6.591410e-01
15506	TBX21	5.980093e-01
15507	TBX22	5.801126e-01
15508	TBX3	8.073486e-01
15509	TBX4	1
15510	TBX5	7.501924e-01
15511	TBX6	5.812685e-01
15512	TBXA2R	4.310534e-01
15513	TBXAS1	1
15514	TC2N	1
15515	TCAP	1
15516	TCEA1	1
15517	TCEA2	1
15518	TCEA3	1
15519	TCEAL1	1
15520	TCEAL2	1.341842e-01
15521	TCEAL3	1.441226e-01
15522	TCEAL4	1
15523	TCEAL5	2.293895e-01
15524	TCEAL6	5.339553e-02
15525	TCEAL7	1
15526	TCEAL8	1
15527	TCEANC	4.548689e-01
15528	TCEB1	1
15529	TCEB2	1
15530	TCEB3	6.980466e-01
15531	TCEB3B	9.083710e-03
15532	TCEB3C	2.999920e-01
15533	TCEB3CL	1
15534	TCERG1	9.898373e-01
15535	TCERG1L	1
15536	TCF12	1
15537	TCF19	8.017588e-01
15538	TCF20	8.634627e-01
15539	TCF21	4.921773e-01
15540	TCF23	1.692301e-01
15541	TCF25	4.219911e-01
15542	TCF3	1
15543	TCF4	8.245420e-01
15544	TCF7	7.067753e-01
15545	TCF7L1	1
15546	TCF7L2	8.474661e-01
15547	TCFL5	1
15548	TCHH	6.950672e-01
15549	TCHHL1	9.435933e-01
15550	TCHP	3.440910e-01
15551	TCIRG1	1
15552	TCL1A	1.046398e-01
15553	TCL1B	1.384520e-01
15554	TCN1	6.270177e-01
15555	TCN2	2.950908e-01
15556	TCOF1	8.593474e-01
15557	TCP1	7.152155e-01
15558	TCP10	2.058478e-01
15559	TCP10L	1
15560	TCP10L2	1
15561	TCP11	4.251739e-01
Done

Running MutSig 2:
Scatter job 172: processing genes 15471 - 15561
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
TBX18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.942995e-02	ci left: 4.871524e-01	ci right 5.068493e-01	k: 4970	n:10000
Cons ci ratio: 2.820218e-02	ci left: 6.495130e-01	ci right 6.681944e-01	k: 6589	n:10000
KS ci ratio: 5.542886e-02	ci left: 3.240605e-01	ci right 3.426367e-01	k: 3333	n:10000
TBX18   10000 perm   2 sec   (4858 perm/sec)   p_kst 3.333000e-01   p_cons 6.589000e-01   p_joint 4.970000e-01

Outputting figure to mutsig2_images.part000000000172/TBX18.11_1856_10000_0.3333_0.6589_0.497.png
                gene_name: TBX18
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 2 percent done.
TBX22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.178575e-01	ci left: 9.370045e-02	ci right 1.055340e-01	k: 995	n:10000
Cons ci ratio: 2.206259e-01	ci left: 2.721699e-02	ci right 3.406005e-02	k: 305	n:10000
KS ci ratio: 5.197341e-02	ci left: 3.530692e-01	ci right 3.720109e-01	k: 3625	n:10000
TBX22   10000 perm   2 sec   (4981 perm/sec)   p_kst 3.625000e-01   p_cons 3.050000e-02   p_joint 9.950000e-02

Joint ci ratio: 7.176879e-02	ci left: 1.251220e-01	ci right 1.344859e-01	k: 2595	n:20000
Cons ci ratio: 1.531921e-01	ci left: 2.926703e-02	ci right 3.417036e-02	k: 633	n:20000
KS ci ratio: 3.687417e-02	ci left: 3.543392e-01	ci right 3.677012e-01	k: 7220	n:20000
TBX22   20000 perm   4 sec   (4534 perm/sec)   p_kst 3.610000e-01   p_cons 3.165000e-02   p_joint 1.297500e-01

Joint ci ratio: 6.710301e-02	ci left: 9.869577e-02	ci right 1.055815e-01	k: 3063	n:30000
Cons ci ratio: 1.361198e-01	ci left: 2.506623e-02	ci right 2.875949e-02	k: 806	n:30000
KS ci ratio: 3.008260e-02	ci left: 3.559608e-01	ci right 3.668661e-01	k: 10842	n:30000
TBX22   30000 perm   7 sec   (4375 perm/sec)   p_kst 3.614000e-01   p_cons 2.686667e-02   p_joint 1.021000e-01

Joint ci ratio: 6.083093e-02	ci left: 9.118183e-02	ci right 9.692726e-02	k: 3761	n:40000
Cons ci ratio: 1.174358e-01	ci left: 2.550637e-02	ci right 2.871277e-02	k: 1083	n:40000
KS ci ratio: 2.601611e-02	ci left: 3.573379e-01	ci right 3.667821e-01	k: 14482	n:40000
TBX22   40000 perm   9 sec   (4250 perm/sec)   p_kst 3.620500e-01   p_cons 2.707500e-02   p_joint 9.402500e-02

Joint ci ratio: 5.701298e-02	ci left: 8.391196e-02	ci right 8.885619e-02	k: 4318	n:50000
Cons ci ratio: 1.035932e-01	ci left: 2.639596e-02	ci right 2.929920e-02	k: 1391	n:50000
KS ci ratio: 2.322299e-02	ci left: 3.587632e-01	ci right 3.672127e-01	k: 18149	n:50000
TBX22   50000 perm   12 sec   (4152 perm/sec)   p_kst 3.629800e-01   p_cons 2.782000e-02   p_joint 8.636000e-02

Joint ci ratio: 5.185306e-02	ci left: 8.470716e-02	ci right 8.923288e-02	k: 5217	n:60000
Cons ci ratio: 9.481287e-02	ci left: 2.638512e-02	ci right 2.902749e-02	k: 1661	n:60000
KS ci ratio: 2.116449e-02	ci left: 3.598990e-01	ci right 3.676142e-01	k: 21825	n:60000
TBX22   60000 perm   15 sec   (4063 perm/sec)   p_kst 3.637500e-01   p_cons 2.768333e-02   p_joint 8.695000e-02

Outputting figure to mutsig2_images.part000000000172/TBX22.10_1595_60000_0.36375_0.027683_0.08695.png
                gene_name: TBX22
               theta_stop: 0.095 
                    nperm: 60000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.028 
      ci_cons_bounds_left: 0.026 
     ci_cons_bounds_right: 0.029 
                  p_joint: 0.087 
     ci_joint_bounds_left: 0.085 
    ci_joint_bounds_right: 0.089 

Current progress: 4 percent done.
TCEB3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.721419e-02	ci left: 2.451943e-01	ci right 2.623493e-01	k: 2537	n:10000
Cons ci ratio: 3.638676e-02	ci left: 5.272676e-01	ci right 5.469108e-01	k: 5371	n:10000
KS ci ratio: 1.063518e-01	ci left: 1.132038e-01	ci right 1.260187e-01	k: 1195	n:10000
TCEB3B   10000 perm   2 sec   (5524 perm/sec)   p_kst 1.195000e-01   p_cons 5.371000e-01   p_joint 2.537000e-01

Joint ci ratio: 4.794567e-02	ci left: 2.444569e-01	ci right 2.565157e-01	k: 5009	n:20000
Cons ci ratio: 2.549655e-02	ci left: 5.347139e-01	ci right 5.485740e-01	k: 10833	n:20000
KS ci ratio: 7.620193e-02	ci left: 1.123797e-01	ci right 1.213321e-01	k: 2336	n:20000
TCEB3B   20000 perm   4 sec   (4842 perm/sec)   p_kst 1.168000e-01   p_cons 5.416500e-01   p_joint 2.504500e-01

Outputting figure to mutsig2_images.part000000000172/TCEB3B.9_2266_20000_0.1168_0.54165_0.25045.png
                gene_name: TCEB3B
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 6 percent done.
TCHH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.866854e-02	ci left: 1.910164e-01	ci right 2.067594e-01	k: 1988	n:10000
Cons ci ratio: 4.044451e-02	ci left: 4.744608e-01	ci right 4.941484e-01	k: 4843	n:10000
KS ci ratio: 1.122450e-01	ci left: 1.025665e-01	ci right 1.148625e-01	k: 1086	n:10000
TCHH   10000 perm   3 sec   (3714 perm/sec)   p_kst 1.086000e-01   p_cons 4.843000e-01   p_joint 1.988000e-01

Joint ci ratio: 5.522086e-02	ci left: 1.956627e-01	ci right 2.068243e-01	k: 4024	n:20000
Cons ci ratio: 2.769158e-02	ci left: 4.934958e-01	ci right 5.074040e-01	k: 10009	n:20000
KS ci ratio: 8.020090e-02	ci left: 1.024046e-01	ci right 1.110102e-01	k: 2133	n:20000
TCHH   20000 perm   6 sec   (3430 perm/sec)   p_kst 1.066500e-01   p_cons 5.004500e-01   p_joint 2.012000e-01

Outputting figure to mutsig2_images.part000000000172/TCHH.8_5840_20000_0.10665_0.50045_0.2012.png
                gene_name: TCHH
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 9 percent done.
TCHHL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.444354e-01	ci left: 6.362530e-02	ci right 7.362777e-02	k: 685	n:10000
Cons ci ratio: 3.221025e-02	ci left: 5.872089e-01	ci right 6.065346e-01	k: 5969	n:10000
KS ci ratio: 2.037220e-01	ci left: 3.205417e-02	ci right 3.941949e-02	k: 356	n:10000
TCHHL1   10000 perm   2 sec   (4516 perm/sec)   p_kst 3.560000e-02   p_cons 5.969000e-01   p_joint 6.850000e-02

Joint ci ratio: 1.020935e-01	ci left: 6.513471e-02	ci right 7.219132e-02	k: 1372	n:20000
Cons ci ratio: 2.367820e-02	ci left: 5.712196e-01	ci right 5.849577e-01	k: 11562	n:20000
KS ci ratio: 1.477441e-01	ci left: 3.148306e-02	ci right 3.655359e-02	k: 679	n:20000
TCHHL1   20000 perm   5 sec   (4130 perm/sec)   p_kst 3.395000e-02   p_cons 5.781000e-01   p_joint 6.860000e-02

Joint ci ratio: 7.713315e-02	ci left: 7.620107e-02	ci right 8.234736e-02	k: 2377	n:30000
Cons ci ratio: 1.844761e-02	ci left: 5.952320e-01	ci right 6.063484e-01	k: 18024	n:30000
KS ci ratio: 1.170009e-01	ci left: 3.395273e-02	ci right 3.820439e-02	k: 1081	n:30000
TCHHL1   30000 perm   8 sec   (3969 perm/sec)   p_kst 3.603333e-02   p_cons 6.008000e-01   p_joint 7.923333e-02

Joint ci ratio: 7.277682e-02	ci left: 6.515863e-02	ci right 7.010437e-02	k: 2704	n:40000
Cons ci ratio: 1.602541e-02	ci left: 5.945032e-01	ci right 6.041324e-01	k: 23973	n:40000
KS ci ratio: 1.019015e-01	ci left: 3.385423e-02	ci right 3.751358e-02	k: 1426	n:40000
TCHHL1   40000 perm   10 sec   (3858 perm/sec)   p_kst 3.565000e-02   p_cons 5.993250e-01   p_joint 6.760000e-02

Joint ci ratio: 5.689052e-02	ci left: 8.424755e-02	ci right 8.920055e-02	k: 4335	n:50000
Cons ci ratio: 1.432066e-02	ci left: 5.954498e-01	ci right 6.040586e-01	k: 29988	n:50000
KS ci ratio: 9.045576e-02	ci left: 3.456018e-02	ci right 3.785395e-02	k: 1809	n:50000
TCHHL1   50000 perm   13 sec   (3769 perm/sec)   p_kst 3.618000e-02   p_cons 5.997600e-01   p_joint 8.670000e-02

Outputting figure to mutsig2_images.part000000000172/TCHHL1.8_2723_50000_0.03618_0.59976_0.0867.png
                gene_name: TCHHL1
               theta_stop: 0.090 
                    nperm: 50000 
                     p_ks: 0.036 
        ci_ks_bounds_left: 0.035 
       ci_ks_bounds_right: 0.038 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.087 
     ci_joint_bounds_left: 0.084 
    ci_joint_bounds_right: 0.089 

Current progress: 11 percent done.
TBC1D8B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.601925e-02	ci left: 4.106995e-01	ci right 4.301469e-01	k: 4204	n:10000
Cons ci ratio: 4.621809e-02	ci left: 4.086069e-01	ci right 4.280407e-01	k: 4183	n:10000
KS ci ratio: 4.973370e-02	ci left: 3.735570e-01	ci right 3.927111e-01	k: 3831	n:10000
TBC1D8B   10000 perm   2 sec   (4726 perm/sec)   p_kst 3.831000e-01   p_cons 4.183000e-01   p_joint 4.204000e-01

Outputting figure to mutsig2_images.part000000000172/TBC1D8B.7_3513_10000_0.3831_0.4183_0.4204.png
                gene_name: TBC1D8B
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 13 percent done.
TBX3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.212482e-02	ci left: 4.541873e-01	ci right 4.738337e-01	k: 4640	n:10000
Cons ci ratio: 7.552859e-02	ci left: 2.041225e-01	ci right 2.202455e-01	k: 2121	n:10000
KS ci ratio: 4.635127e-02	ci left: 4.072119e-01	ci right 4.266366e-01	k: 4169	n:10000
TBX3   10000 perm   2 sec   (5327 perm/sec)   p_kst 4.169000e-01   p_cons 2.121000e-01   p_joint 4.640000e-01

Outputting figure to mutsig2_images.part000000000172/TBX3.6_2264_10000_0.4169_0.2121_0.464.png
                gene_name: TBX3
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 15 percent done.
TCEB3C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.573861e-02	ci left: 2.535997e-01	ci right 2.709390e-01	k: 2622	n:10000
Cons ci ratio: 7.616898e-03	ci left: 9.598466e-01	ci right 9.672802e-01	k: 9637	n:10000
KS ci ratio: 9.982218e-02	ci left: 1.268913e-01	ci right 1.403229e-01	k: 1335	n:10000
TCEB3C   10000 perm   2 sec   (4658 perm/sec)   p_kst 1.335000e-01   p_cons 9.637000e-01   p_joint 2.622000e-01

Outputting figure to mutsig2_images.part000000000172/TCEB3C.6_3288_10000_0.1335_0.9637_0.2622.png
                gene_name: TCEB3C
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 17 percent done.
TCF20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.433170e-01	ci left: 6.459169e-02	ci right 7.466078e-02	k: 695	n:10000
Cons ci ratio: 1.846975e-01	ci left: 3.910770e-02	ci right 4.716118e-02	k: 430	n:10000
KS ci ratio: 7.589188e-02	ci left: 2.025451e-01	ci right 2.186238e-01	k: 2105	n:10000
TCF20   10000 perm   2 sec   (4069 perm/sec)   p_kst 2.105000e-01   p_cons 4.300000e-02   p_joint 6.950000e-02

Joint ci ratio: 1.146183e-01	ci left: 5.207485e-02	ci right 5.845522e-02	k: 1104	n:20000
Cons ci ratio: 1.312415e-01	ci left: 3.989122e-02	ci right 4.554270e-02	k: 853	n:20000
KS ci ratio: 5.399737e-02	ci left: 2.028876e-01	ci right 2.141972e-01	k: 4170	n:20000
TCF20   20000 perm   5 sec   (3693 perm/sec)   p_kst 2.085000e-01   p_cons 4.265000e-02   p_joint 5.520000e-02

Joint ci ratio: 8.215595e-02	ci left: 6.762830e-02	ci right 7.345520e-02	k: 2115	n:30000
Cons ci ratio: 1.066384e-01	ci left: 4.079715e-02	ci right 4.542520e-02	k: 1292	n:30000
KS ci ratio: 4.363757e-02	ci left: 2.073202e-01	ci right 2.166023e-01	k: 6358	n:30000
TCF20   30000 perm   8 sec   (3542 perm/sec)   p_kst 2.119333e-01   p_cons 4.306667e-02   p_joint 7.050000e-02

Joint ci ratio: 7.762982e-02	ci left: 5.759400e-02	ci right 6.227014e-02	k: 2396	n:40000
Cons ci ratio: 9.277446e-02	ci left: 4.073943e-02	ci right 4.472729e-02	k: 1708	n:40000
KS ci ratio: 3.784703e-02	ci left: 2.074569e-01	ci right 2.154850e-01	k: 8458	n:40000
TCF20   40000 perm   12 sec   (3455 perm/sec)   p_kst 2.114500e-01   p_cons 4.270000e-02   p_joint 5.990000e-02

Outputting figure to mutsig2_images.part000000000172/TCF20.6_5921_40000_0.21145_0.0427_0.0599.png
                gene_name: TCF20
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.043 
      ci_cons_bounds_left: 0.041 
     ci_cons_bounds_right: 0.045 
                  p_joint: 0.060 
     ci_joint_bounds_left: 0.058 
    ci_joint_bounds_right: 0.062 

Current progress: 19 percent done.
TBC1D4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.666916e-01	ci left: 4.801742e-02	ci right 5.684561e-02	k: 523	n:10000
Cons ci ratio: 2.016804e-01	ci left: 3.271977e-02	ci right 4.015343e-02	k: 363	n:10000
KS ci ratio: 1.029581e-01	ci left: 1.200443e-01	ci right 1.331741e-01	k: 1265	n:10000
TBC1D4   10000 perm   2 sec   (4572 perm/sec)   p_kst 1.265000e-01   p_cons 3.630000e-02   p_joint 5.230000e-02

Joint ci ratio: 1.466316e-01	ci left: 3.196523e-02	ci right 3.707126e-02	k: 689	n:20000
Cons ci ratio: 1.481959e-01	ci left: 3.129024e-02	ci right 3.634648e-02	k: 675	n:20000
KS ci ratio: 7.259044e-02	ci left: 1.226116e-01	ci right 1.318970e-01	k: 2544	n:20000
TBC1D4   20000 perm   5 sec   (4134 perm/sec)   p_kst 1.272000e-01   p_cons 3.375000e-02   p_joint 3.445000e-02

Joint ci ratio: 8.846056e-02	ci left: 5.870939e-02	ci right 6.417592e-02	k: 1842	n:30000
Cons ci ratio: 1.210024e-01	ci left: 3.175129e-02	ci right 3.587297e-02	k: 1013	n:30000
KS ci ratio: 5.966029e-02	ci left: 1.220342e-01	ci right 1.295718e-01	k: 3773	n:30000
TBC1D4   30000 perm   8 sec   (3950 perm/sec)   p_kst 1.257667e-01   p_cons 3.376667e-02   p_joint 6.140000e-02

Joint ci ratio: 8.969304e-02	ci left: 4.352722e-02	ci right 4.763907e-02	k: 1822	n:40000
Cons ci ratio: 1.053574e-01	ci left: 3.168498e-02	ci right 3.523317e-02	k: 1337	n:40000
KS ci ratio: 5.196321e-02	ci left: 1.213041e-01	ci right 1.278005e-01	k: 4981	n:40000
TBC1D4   40000 perm   10 sec   (3832 perm/sec)   p_kst 1.245250e-01   p_cons 3.342500e-02   p_joint 4.555000e-02

Joint ci ratio: 8.849582e-02	ci left: 3.608652e-02	ci right 3.944742e-02	k: 1887	n:50000
Cons ci ratio: 9.108417e-02	ci left: 3.409069e-02	ci right 3.736350e-02	k: 1785	n:50000
KS ci ratio: 4.625916e-02	ci left: 1.226674e-01	ci right 1.284961e-01	k: 6278	n:50000
TBC1D4   50000 perm   13 sec   (3754 perm/sec)   p_kst 1.255600e-01   p_cons 3.570000e-02   p_joint 3.774000e-02

Outputting figure to mutsig2_images.part000000000172/TBC1D4.5_3981_50000_0.12556_0.0357_0.03774.png
                gene_name: TBC1D4
               theta_stop: 0.091 
                    nperm: 50000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.036 
      ci_cons_bounds_left: 0.034 
     ci_cons_bounds_right: 0.037 
                  p_joint: 0.038 
     ci_joint_bounds_left: 0.036 
    ci_joint_bounds_right: 0.039 

Current progress: 21 percent done.
TBC1D9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.211284e-02	ci left: 7.500881e-01	ci right 7.669611e-01	k: 7586	n:10000
Cons ci ratio: 2.072783e-02	ci left: 7.732695e-01	ci right 7.895662e-01	k: 7815	n:10000
KS ci ratio: 5.133863e-02	ci left: 3.587363e-01	ci right 3.777405e-01	k: 3682	n:10000
TBC1D9   10000 perm   2 sec   (5210 perm/sec)   p_kst 3.682000e-01   p_cons 7.815000e-01   p_joint 7.586000e-01

Outputting figure to mutsig2_images.part000000000172/TBC1D9.5_3885_10000_0.3682_0.7815_0.7586.png
                gene_name: TBC1D9
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 23 percent done.
TBCD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.445485e-01	ci left: 6.352868e-02	ci right 7.352445e-02	k: 684	n:10000
Cons ci ratio: 6.007874e-02	ci left: 2.895409e-01	ci right 3.075765e-01	k: 2985	n:10000
KS ci ratio: 2.138699e-01	ci left: 2.901644e-02	ci right 3.605933e-02	k: 324	n:10000
TBCD   10000 perm   2 sec   (4691 perm/sec)   p_kst 3.240000e-02   p_cons 2.985000e-01   p_joint 6.840000e-02

Joint ci ratio: 1.138029e-01	ci left: 5.280458e-02	ci right 5.922527e-02	k: 1119	n:20000
Cons ci ratio: 4.361978e-02	ci left: 2.813330e-01	ci right 2.939288e-01	k: 5752	n:20000
KS ci ratio: 1.481959e-01	ci left: 3.129024e-02	ci right 3.634648e-02	k: 675	n:20000
TBCD   20000 perm   5 sec   (4261 perm/sec)   p_kst 3.375000e-02   p_cons 2.876000e-01   p_joint 5.595000e-02

Joint ci ratio: 9.484952e-02	ci left: 5.130611e-02	ci right 5.644738e-02	k: 1615	n:30000
Cons ci ratio: 3.535793e-02	ci left: 2.854660e-01	ci right 2.957746e-01	k: 8718	n:30000
KS ci ratio: 1.203893e-01	ci left: 3.207488e-02	ci right 3.621597e-02	k: 1023	n:30000
TBCD   30000 perm   7 sec   (4074 perm/sec)   p_kst 3.410000e-02   p_cons 2.906000e-01   p_joint 5.383333e-02

Joint ci ratio: 9.182436e-02	ci left: 4.157064e-02	ci right 4.559596e-02	k: 1742	n:40000
Cons ci ratio: 3.041485e-02	ci left: 2.889406e-01	ci right 2.978894e-01	k: 11736	n:40000
KS ci ratio: 1.040373e-01	ci left: 3.248908e-02	ci right 3.607895e-02	k: 1370	n:40000
TBCD   40000 perm   10 sec   (3941 perm/sec)   p_kst 3.425000e-02   p_cons 2.934000e-01   p_joint 4.355000e-02

Joint ci ratio: 8.188998e-02	ci left: 4.202273e-02	ci right 4.563048e-02	k: 2190	n:50000
Cons ci ratio: 2.715443e-02	ci left: 2.901680e-01	ci right 2.981759e-01	k: 14708	n:50000
KS ci ratio: 9.330092e-02	ci left: 3.250678e-02	ci right 3.570761e-02	k: 1704	n:50000
TBCD   50000 perm   13 sec   (3837 perm/sec)   p_kst 3.408000e-02   p_cons 2.941600e-01   p_joint 4.380000e-02

Outputting figure to mutsig2_images.part000000000172/TBCD.5_3735_50000_0.03408_0.29416_0.0438.png
                gene_name: TBCD
               theta_stop: 0.093 
                    nperm: 50000 
                     p_ks: 0.034 
        ci_ks_bounds_left: 0.033 
       ci_ks_bounds_right: 0.036 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.044 
     ci_joint_bounds_left: 0.042 
    ci_joint_bounds_right: 0.046 

Current progress: 26 percent done.
TBX5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.045847e-02	ci left: 6.139190e-01	ci right 6.330091e-01	k: 6235	n:10000
KS ci ratio: 2.220940e-02	ci left: 7.484697e-01	ci right 7.653804e-01	k: 7570	n:10000
TBX5   10000 perm   2 sec   (5387 perm/sec)   p_kst 7.570000e-01   p_cons 6.235000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000172/TBX5.5_1656_10000_0.757_0.6235_1.png
                gene_name: TBX5
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 28 percent done.
TCERG1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.059430e-02	ci left: 7.754984e-01	ci right 7.917361e-01	k: 7837	n:10000
Cons ci ratio: 2.703753e-02	ci left: 6.683385e-01	ci right 6.867580e-01	k: 6776	n:10000
KS ci ratio: 2.816456e-02	ci left: 6.501168e-01	ci right 6.687903e-01	k: 6595	n:10000
TCERG1L   10000 perm   2 sec   (5668 perm/sec)   p_kst 6.595000e-01   p_cons 6.776000e-01   p_joint 7.837000e-01

Outputting figure to mutsig2_images.part000000000172/TCERG1L.5_1809_10000_0.6595_0.6776_0.7837.png
                gene_name: TCERG1L
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.79 

Current progress: 30 percent done.
TCOF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.290821e-02	ci left: 3.449190e-01	ci right 3.637659e-01	k: 3543	n:10000
Cons ci ratio: 5.427694e-02	ci left: 3.333947e-01	ci right 3.520970e-01	k: 3427	n:10000
KS ci ratio: 5.777941e-02	ci left: 3.059998e-01	ci right 3.243080e-01	k: 3151	n:10000
TCOF1   10000 perm   2 sec   (4404 perm/sec)   p_kst 3.151000e-01   p_cons 3.427000e-01   p_joint 3.543000e-01

Outputting figure to mutsig2_images.part000000000172/TCOF1.5_4596_10000_0.3151_0.3427_0.3543.png
                gene_name: TCOF1
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 32 percent done.
TBCK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.541650e-02	ci left: 1.374671e-01	ci right 1.513407e-01	k: 1443	n:10000
Cons ci ratio: 3.556745e-01	ci left: 9.867770e-03	ci right 1.422343e-02	k: 119	n:10000
KS ci ratio: 4.721990e-02	ci left: 3.982459e-01	ci right 4.176078e-01	k: 4079	n:10000
TBCK   10000 perm   2 sec   (4988 perm/sec)   p_kst 4.079000e-01   p_cons 1.190000e-02   p_joint 1.443000e-01

Joint ci ratio: 1.360556e-01	ci left: 3.713280e-02	ci right 4.260201e-02	k: 796	n:20000
Cons ci ratio: 2.876468e-01	ci left: 7.877125e-03	ci right 1.056846e-02	k: 183	n:20000
KS ci ratio: 3.305627e-02	ci left: 4.059648e-01	ci right 4.196606e-01	k: 8256	n:20000
TBCK   20000 perm   5 sec   (4387 perm/sec)   p_kst 4.128000e-01   p_cons 9.150000e-03   p_joint 3.980000e-02

Joint ci ratio: 8.363240e-02	ci left: 6.537265e-02	ci right 7.111131e-02	k: 2046	n:30000
Cons ci ratio: 2.366011e-01	ci left: 7.993789e-03	ci right 1.016955e-02	k: 271	n:30000
KS ci ratio: 2.734691e-02	ci left: 4.009012e-01	ci right 4.120502e-01	k: 12194	n:30000
TBCK   30000 perm   7 sec   (4219 perm/sec)   p_kst 4.064667e-01   p_cons 9.033333e-03   p_joint 6.820000e-02

Joint ci ratio: 5.595097e-02	ci left: 1.062336e-01	ci right 1.123733e-01	k: 4371	n:40000
Cons ci ratio: 2.022928e-01	ci left: 8.358856e-03	ci right 1.026340e-02	k: 371	n:40000
KS ci ratio: 2.376919e-02	ci left: 3.999094e-01	ci right 4.095544e-01	k: 16189	n:40000
TBCK   40000 perm   10 sec   (4095 perm/sec)   p_kst 4.047250e-01   p_cons 9.275000e-03   p_joint 1.092750e-01

Joint ci ratio: 4.654786e-02	ci left: 1.213210e-01	ci right 1.271227e-01	k: 6210	n:50000
Cons ci ratio: 1.474406e-01	ci left: 1.291137e-02	ci right 1.498563e-02	k: 696	n:50000
KS ci ratio: 2.129645e-02	ci left: 3.995948e-01	ci right 4.082164e-01	k: 20195	n:50000
TBCK   50000 perm   13 sec   (3982 perm/sec)   p_kst 4.039000e-01   p_cons 1.392000e-02   p_joint 1.242000e-01

Joint ci ratio: 4.369636e-02	ci left: 1.156765e-01	ci right 1.208605e-01	k: 7095	n:60000
Cons ci ratio: 1.351197e-01	ci left: 1.289789e-02	ci right 1.478290e-02	k: 829	n:60000
KS ci ratio: 1.957897e-02	ci left: 3.965758e-01	ci right 4.044338e-01	k: 24030	n:60000
TBCK   60000 perm   15 sec   (3897 perm/sec)   p_kst 4.005000e-01   p_cons 1.381667e-02   p_joint 1.182500e-01

Joint ci ratio: 4.086097e-02	ci left: 1.138206e-01	ci right 1.185826e-01	k: 8133	n:70000
Cons ci ratio: 1.249224e-01	ci left: 1.300422e-02	ci right 1.475070e-02	k: 970	n:70000
KS ci ratio: 1.816071e-02	ci left: 3.959685e-01	ci right 4.032398e-01	k: 27972	n:70000
TBCK   70000 perm   18 sec   (3831 perm/sec)   p_kst 3.996000e-01   p_cons 1.385714e-02   p_joint 1.161857e-01

Joint ci ratio: 4.036354e-02	ci left: 1.033298e-01	ci right 1.075989e-01	k: 8436	n:80000
Cons ci ratio: 1.174847e-01	ci left: 1.291805e-02	ci right 1.454249e-02	k: 1097	n:80000
KS ci ratio: 1.676640e-02	ci left: 4.025068e-01	ci right 4.093250e-01	k: 32473	n:80000
TBCK   80000 perm   21 sec   (3766 perm/sec)   p_kst 4.059125e-01   p_cons 1.371250e-02   p_joint 1.054500e-01

Joint ci ratio: 3.957962e-02	ci left: 9.632931e-02	ci right 1.002300e-01	k: 8844	n:90000
Cons ci ratio: 1.107771e-01	ci left: 1.296152e-02	ci right 1.449228e-02	k: 1234	n:90000
KS ci ratio: 1.581051e-02	ci left: 4.026116e-01	ci right 4.090389e-01	k: 36524	n:90000
TBCK   90000 perm   24 sec   (3705 perm/sec)   p_kst 4.058222e-01   p_cons 1.371111e-02   p_joint 9.826667e-02

Joint ci ratio: 3.476314e-02	ci left: 1.108455e-01	ci right 1.147769e-01	k: 11280	n:100000
Cons ci ratio: 1.051399e-01	ci left: 1.298867e-02	ci right 1.443974e-02	k: 1370	n:100000
KS ci ratio: 1.507480e-02	ci left: 4.003572e-01	ci right 4.064484e-01	k: 40340	n:100000
TBCK   100000 perm   27 sec   (3645 perm/sec)   p_kst 4.034000e-01   p_cons 1.370000e-02   p_joint 1.128000e-01

Joint ci ratio: 3.485343e-02	ci left: 1.013360e-01	ci right 1.049395e-01	k: 11344	n:110000
Cons ci ratio: 1.002167e-01	ci left: 1.303023e-02	ci right 1.441377e-02	k: 1508	n:110000
KS ci ratio: 1.435484e-02	ci left: 4.011164e-01	ci right 4.069250e-01	k: 44442	n:110000
TBCK   110000 perm   31 sec   (3588 perm/sec)   p_kst 4.040182e-01   p_cons 1.370909e-02   p_joint 1.031273e-01

Joint ci ratio: 3.252528e-02	ci left: 1.062161e-01	ci right 1.097362e-01	k: 12956	n:120000
Cons ci ratio: 9.536982e-02	ci left: 1.322078e-02	ci right 1.455286e-02	k: 1665	n:120000
KS ci ratio: 1.374116e-02	ci left: 4.013301e-01	ci right 4.068912e-01	k: 48493	n:120000
TBCK   120000 perm   34 sec   (3531 perm/sec)   p_kst 4.041083e-01   p_cons 1.387500e-02   p_joint 1.079667e-01

Outputting figure to mutsig2_images.part000000000172/TBCK.4_2782_120000_0.40411_0.013875_0.10797.png
                gene_name: TBCK
               theta_stop: 0.095 
                    nperm: 120000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.014 
      ci_cons_bounds_left: 0.013 
     ci_cons_bounds_right: 0.015 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 34 percent done.
TBR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.390393e-02	ci left: 8.819628e-01	ci right 8.944101e-01	k: 8883	n:10000
KS ci ratio: 2.952506e-02	ci left: 6.284917e-01	ci right 6.474279e-01	k: 6380	n:10000
TBR1   10000 perm   2 sec   (5328 perm/sec)   p_kst 6.380000e-01   p_cons 8.883000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000172/TBR1.4_2073_10000_0.638_0.8883_1.png
                gene_name: TBR1
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 36 percent done.
TBX20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.737663e-02	ci left: 3.966523e-01	ci right 4.160023e-01	k: 4063	n:10000
Cons ci ratio: 1.367182e-02	ci left: 8.853423e-01	ci right 8.976286e-01	k: 8916	n:10000
KS ci ratio: 5.624939e-02	ci left: 3.176084e-01	ci right 3.360925e-01	k: 3268	n:10000
TBX20   10000 perm   2 sec   (5890 perm/sec)   p_kst 3.268000e-01   p_cons 8.916000e-01   p_joint 4.063000e-01

Outputting figure to mutsig2_images.part000000000172/TBX20.4_1377_10000_0.3268_0.8916_0.4063.png
                gene_name: TBX20
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 38 percent done.
TBC1D7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.441962e-02	ci left: 5.548147e-01	ci right 5.743477e-01	k: 5646	n:10000
Cons ci ratio: 8.133230e-02	ci left: 1.807775e-01	ci right 1.962044e-01	k: 1884	n:10000
KS ci ratio: 1.307777e-02	ci left: 8.938505e-01	ci right 9.057154e-01	k: 8999	n:10000
TBC1D7   10000 perm   2 sec   (6335 perm/sec)   p_kst 8.999000e-01   p_cons 1.884000e-01   p_joint 5.646000e-01

Outputting figure to mutsig2_images.part000000000172/TBC1D7.3_910_10000_0.8999_0.1884_0.5646.png
                gene_name: TBC1D7
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 40 percent done.
TBK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.288106e-02	ci left: 8.966209e-01	ci right 9.083435e-01	k: 9026	n:10000
KS ci ratio: 6.832654e-03	ci left: 9.670990e-01	ci right 9.738232e-01	k: 9706	n:10000
TBK1   10000 perm   2 sec   (5775 perm/sec)   p_kst 9.706000e-01   p_cons 9.026000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000172/TBK1.3_2270_10000_0.9706_0.9026_1.png
                gene_name: TBK1
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 43 percent done.
TBX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.575520e-02	ci left: 2.031366e-01	ci right 2.192320e-01	k: 2111	n:10000
Cons ci ratio: 8.005264e-02	ci left: 1.856005e-01	ci right 2.011785e-01	k: 1933	n:10000
KS ci ratio: 5.174931e-02	ci left: 3.550575e-01	ci right 3.740215e-01	k: 3645	n:10000
TBX2   10000 perm   2 sec   (5746 perm/sec)   p_kst 3.645000e-01   p_cons 1.933000e-01   p_joint 2.111000e-01

Outputting figure to mutsig2_images.part000000000172/TBX2.3_2167_10000_0.3645_0.1933_0.2111.png
                gene_name: TBX2
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 45 percent done.
TBX21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.432953e-02	ci left: 2.094474e-01	ci right 2.257174e-01	k: 2175	n:10000
Cons ci ratio: 1.170758e-01	ci left: 9.486876e-02	ci right 1.067649e-01	k: 1007	n:10000
KS ci ratio: 6.730302e-02	ci left: 2.447000e-01	ci right 2.618439e-01	k: 2532	n:10000
TBX21   10000 perm   2 sec   (5947 perm/sec)   p_kst 2.532000e-01   p_cons 1.007000e-01   p_joint 2.175000e-01

Joint ci ratio: 5.055938e-02	ci left: 2.252228e-01	ci right 2.369555e-01	k: 4621	n:20000
Cons ci ratio: 8.219848e-02	ci left: 9.788774e-02	ci right 1.063283e-01	k: 2041	n:20000
KS ci ratio: 4.881011e-02	ci left: 2.378619e-01	ci right 2.498127e-01	k: 4876	n:20000
TBX21   20000 perm   4 sec   (5216 perm/sec)   p_kst 2.438000e-01   p_cons 1.020500e-01   p_joint 2.310500e-01

Outputting figure to mutsig2_images.part000000000172/TBX21.3_1632_20000_0.2438_0.10205_0.23105.png
                gene_name: TBX21
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.098 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 47 percent done.
TCEAL6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.417885e-02	ci left: 1.706458e-01	ci right 1.857422e-01	k: 1781	n:10000
Cons ci ratio: 3.824171e-02	ci left: 5.024508e-01	ci right 5.221421e-01	k: 5123	n:10000
KS ci ratio: 1.451179e-01	ci left: 6.304562e-02	ci right 7.300781e-02	k: 679	n:10000
TCEAL6   10000 perm   1 sec   (6842 perm/sec)   p_kst 6.790000e-02   p_cons 5.123000e-01   p_joint 1.781000e-01

Joint ci ratio: 7.374025e-02	ci left: 1.192162e-01	ci right 1.283935e-01	k: 2475	n:20000
Cons ci ratio: 2.541451e-02	ci left: 5.363156e-01	ci right 5.501718e-01	k: 10865	n:20000
KS ci ratio: 1.045681e-01	ci left: 6.220709e-02	ci right 6.911984e-02	k: 1312	n:20000
TCEAL6   20000 perm   3 sec   (5982 perm/sec)   p_kst 6.560000e-02   p_cons 5.432500e-01   p_joint 1.237500e-01

Joint ci ratio: 6.201386e-02	ci left: 1.138766e-01	ci right 1.211976e-01	k: 3525	n:30000
Cons ci ratio: 2.076177e-02	ci left: 5.373424e-01	ci right 5.486492e-01	k: 16290	n:30000
KS ci ratio: 8.536850e-02	ci left: 6.285657e-02	ci right 6.849457e-02	k: 1969	n:30000
TCEAL6   30000 perm   5 sec   (5552 perm/sec)   p_kst 6.563333e-02   p_cons 5.430000e-01   p_joint 1.175000e-01

Outputting figure to mutsig2_images.part000000000172/TCEAL6.3_556_30000_0.065633_0.543_0.1175.png
                gene_name: TCEAL6
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.066 
        ci_ks_bounds_left: 0.063 
       ci_ks_bounds_right: 0.068 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 49 percent done.
TCF25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.246706e-02	ci left: 9.023712e-01	ci right 9.137898e-01	k: 9082	n:10000
Cons ci ratio: 3.106476e-02	ci left: 6.045771e-01	ci right 6.237564e-01	k: 6142	n:10000
KS ci ratio: 1.721807e-02	ci left: 8.309356e-01	ci right 8.454668e-01	k: 8383	n:10000
TCF25   10000 perm   2 sec   (5575 perm/sec)   p_kst 8.383000e-01   p_cons 6.142000e-01   p_joint 9.082000e-01

Outputting figure to mutsig2_images.part000000000172/TCF25.3_2103_10000_0.8383_0.6142_0.9082.png
                gene_name: TCF25
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 51 percent done.
TCN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.967515e-02	ci left: 4.840539e-01	ci right 5.037497e-01	k: 4939	n:10000
Cons ci ratio: 9.507050e-02	ci left: 1.383491e-01	ci right 1.522583e-01	k: 1452	n:10000
KS ci ratio: 1.710368e-02	ci left: 8.327676e-01	ci right 8.472337e-01	k: 8401	n:10000
TCN1   10000 perm   2 sec   (6102 perm/sec)   p_kst 8.401000e-01   p_cons 1.452000e-01   p_joint 4.939000e-01

Outputting figure to mutsig2_images.part000000000172/TCN1.3_1338_10000_0.8401_0.1452_0.4939.png
                gene_name: TCN1
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 53 percent done.
TCN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.295844e-02	ci left: 5.760717e-01	ci right 5.954783e-01	k: 5858	n:10000
KS ci ratio: 7.518634e-03	ci left: 9.607903e-01	ci right 9.681359e-01	k: 9646	n:10000
TCN2   10000 perm   2 sec   (6345 perm/sec)   p_kst 9.646000e-01   p_cons 5.858000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000172/TCN2.3_1320_10000_0.9646_0.5858_1.png
                gene_name: TCN2
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 55 percent done.
TCP11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.678286e-02	ci left: 4.027284e-01	ci right 4.221226e-01	k: 4124	n:10000
Cons ci ratio: 5.426490e-02	ci left: 3.334940e-01	ci right 3.521976e-01	k: 3428	n:10000
KS ci ratio: 6.427613e-02	ci left: 2.623061e-01	ci right 2.798274e-01	k: 2710	n:10000
TCP11   10000 perm   2 sec   (5979 perm/sec)   p_kst 2.710000e-01   p_cons 3.428000e-01   p_joint 4.124000e-01

Outputting figure to mutsig2_images.part000000000172/TCP11.3_1645_10000_0.271_0.3428_0.4124.png
                gene_name: TCP11
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 57 percent done.
TBC1D5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.499456e-02	ci left: 8.657021e-01	ci right 8.788802e-01	k: 8724	n:10000
Cons ci ratio: 5.690767e-02	ci left: 3.125475e-01	ci right 3.309565e-01	k: 3217	n:10000
KS ci ratio: 3.916278e-02	ci left: 4.905513e-01	ci right 5.102485e-01	k: 5004	n:10000
TBC1D5   10000 perm   2 sec   (5621 perm/sec)   p_kst 5.004000e-01   p_cons 3.217000e-01   p_joint 8.724000e-01

Outputting figure to mutsig2_images.part000000000172/TBC1D5.2_2538_10000_0.5004_0.3217_0.8724.png
                gene_name: TBC1D5
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 60 percent done.
TBC1D9B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.608005e-02	ci left: 2.516216e-01	ci right 2.689183e-01	k: 2602	n:10000
KS ci ratio: 4.157017e-02	ci left: 4.607769e-01	ci right 4.804402e-01	k: 4706	n:10000
TBC1D9B   10000 perm   2 sec   (5227 perm/sec)   p_kst 4.706000e-01   p_cons 2.602000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000172/TBC1D9B.2_3841_10000_0.4706_0.2602_1.png
                gene_name: TBC1D9B
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
TBL1XR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.457788e-02	ci left: 7.088662e-01	ci right 7.266068e-01	k: 7178	n:10000
Cons ci ratio: 4.467632e-02	ci left: 4.251537e-01	ci right 4.446842e-01	k: 4349	n:10000
KS ci ratio: 3.219686e-02	ci left: 5.874096e-01	ci right 6.067338e-01	k: 5971	n:10000
TBL1XR1   10000 perm   2 sec   (6352 perm/sec)   p_kst 5.971000e-01   p_cons 4.349000e-01   p_joint 7.178000e-01

Outputting figure to mutsig2_images.part000000000172/TBL1XR1.2_1601_10000_0.5971_0.4349_0.7178.png
                gene_name: TBL1XR1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 64 percent done.
TBL1Y
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.502819e-02	ci left: 8.651913e-01	ci right 8.783912e-01	k: 8719	n:10000
Cons ci ratio: 2.379086e-02	ci left: 7.219903e-01	ci right 7.394751e-01	k: 7308	n:10000
KS ci ratio: 3.170407e-02	ci left: 5.948373e-01	ci right 6.141018e-01	k: 6045	n:10000
TBL1Y   10000 perm   2 sec   (6295 perm/sec)   p_kst 6.045000e-01   p_cons 7.308000e-01   p_joint 8.719000e-01

Outputting figure to mutsig2_images.part000000000172/TBL1Y.2_1625_10000_0.6045_0.7308_0.8719.png
                gene_name: TBL1Y
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 66 percent done.
TBL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.691388e-02	ci left: 6.703529e-01	ci right 6.887424e-01	k: 6796	n:10000
Cons ci ratio: 6.990893e-02	ci left: 2.307670e-01	ci right 2.475852e-01	k: 2391	n:10000
KS ci ratio: 8.036185e-02	ci left: 1.844192e-01	ci right 1.999605e-01	k: 1921	n:10000
TBL2   10000 perm   1 sec   (6713 perm/sec)   p_kst 1.921000e-01   p_cons 2.391000e-01   p_joint 6.796000e-01

Outputting figure to mutsig2_images.part000000000172/TBL2.2_1372_10000_0.1921_0.2391_0.6796.png
                gene_name: TBL2
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 68 percent done.
TBL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.168161e-02	ci left: 9.129648e-01	ci right 9.237900e-01	k: 9185	n:10000
Cons ci ratio: 1.640474e-02	ci left: 8.438687e-01	ci right 8.579262e-01	k: 8510	n:10000
KS ci ratio: 4.037980e-02	ci left: 4.752601e-01	ci right 4.949486e-01	k: 4851	n:10000
TBL3   10000 perm   2 sec   (6045 perm/sec)   p_kst 4.851000e-01   p_cons 8.510000e-01   p_joint 9.185000e-01

Outputting figure to mutsig2_images.part000000000172/TBL3.2_2515_10000_0.4851_0.851_0.9185.png
                gene_name: TBL3
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 70 percent done.
TBX15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.429301e-02	ci left: 8.762316e-01	ci right 8.889446e-01	k: 8827	n:10000
Cons ci ratio: 9.973603e-02	ci left: 1.270870e-01	ci right 1.405271e-01	k: 1337	n:10000
KS ci ratio: 1.477164e-02	ci left: 8.690740e-01	ci right 8.821063e-01	k: 8757	n:10000
TBX15   10000 perm   2 sec   (6341 perm/sec)   p_kst 8.757000e-01   p_cons 1.337000e-01   p_joint 8.827000e-01

Outputting figure to mutsig2_images.part000000000172/TBX15.2_1519_10000_0.8757_0.1337_0.8827.png
                gene_name: TBX15
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 72 percent done.
TBX19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.377574e-02	ci left: 2.653742e-01	ci right 2.829575e-01	k: 2741	n:10000
Cons ci ratio: 1.592875e-01	ci left: 5.253552e-02	ci right 6.172460e-02	k: 570	n:10000
KS ci ratio: 6.985136e-02	ci left: 2.310633e-01	ci right 2.478887e-01	k: 2394	n:10000
TBX19   10000 perm   2 sec   (6456 perm/sec)   p_kst 2.394000e-01   p_cons 5.700000e-02   p_joint 2.741000e-01

Joint ci ratio: 4.488786e-02	ci left: 2.698127e-01	ci right 2.822525e-01	k: 5520	n:20000
Cons ci ratio: 1.109958e-01	ci left: 5.543290e-02	ci right 6.199612e-02	k: 1173	n:20000
KS ci ratio: 4.987209e-02	ci left: 2.300793e-01	ci right 2.418976e-01	k: 4719	n:20000
TBX19   20000 perm   4 sec   (5645 perm/sec)   p_kst 2.359500e-01   p_cons 5.865000e-02   p_joint 2.760000e-01

Joint ci ratio: 1.398132e-01	ci left: 2.374559e-02	ci right 2.734709e-02	k: 765	n:30000
Cons ci ratio: 1.139753e-01	ci left: 3.576737e-02	ci right 4.012270e-02	k: 1137	n:30000
KS ci ratio: 4.068668e-02	ci left: 2.314689e-01	ci right 2.411156e-01	k: 7088	n:30000
TBX19   30000 perm   6 sec   (5340 perm/sec)   p_kst 2.362667e-01   p_cons 3.790000e-02   p_joint 2.550000e-02

Joint ci ratio: 1.384395e-01	ci left: 1.828815e-02	ci right 2.103221e-02	k: 785	n:40000
Cons ci ratio: 9.909120e-02	ci left: 3.578135e-02	ci right 3.953616e-02	k: 1505	n:40000
KS ci ratio: 3.533120e-02	ci left: 2.311499e-01	ci right 2.394886e-01	k: 9412	n:40000
TBX19   40000 perm   8 sec   (5139 perm/sec)   p_kst 2.353000e-01   p_cons 3.762500e-02   p_joint 1.962500e-02

Joint ci ratio: 1.234086e-01	ci left: 1.855805e-02	ci right 2.101815e-02	k: 988	n:50000
Cons ci ratio: 8.839855e-02	ci left: 3.616482e-02	ci right 3.952911e-02	k: 1891	n:50000
KS ci ratio: 3.163506e-02	ci left: 2.312095e-01	ci right 2.386613e-01	k: 11746	n:50000
TBX19   50000 perm   10 sec   (4946 perm/sec)   p_kst 2.349200e-01   p_cons 3.782000e-02   p_joint 1.976000e-02

Joint ci ratio: 9.012432e-02	ci left: 2.918739e-02	ci right 3.195826e-02	k: 1833	n:60000
Cons ci ratio: 8.028221e-02	ci left: 3.668032e-02	ci right 3.976456e-02	k: 2292	n:60000
KS ci ratio: 2.892756e-02	ci left: 2.309320e-01	ci right 2.377270e-01	k: 14059	n:60000
TBX19   60000 perm   12 sec   (4820 perm/sec)   p_kst 2.343167e-01   p_cons 3.820000e-02   p_joint 3.055000e-02

Outputting figure to mutsig2_images.part000000000172/TBX19.2_1379_60000_0.23432_0.0382_0.03055.png
                gene_name: TBX19
               theta_stop: 0.090 
                    nperm: 60000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.038 
      ci_cons_bounds_left: 0.037 
     ci_cons_bounds_right: 0.040 
                  p_joint: 0.031 
     ci_joint_bounds_left: 0.029 
    ci_joint_bounds_right: 0.032 

Current progress: 74 percent done.
TBXA2R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.982246e-02	ci left: 1.864866e-01	ci right 2.020919e-01	k: 1942	n:10000
Cons ci ratio: 1.044753e-01	ci left: 1.169164e-01	ci right 1.299039e-01	k: 1233	n:10000
KS ci ratio: 3.728142e-02	ci left: 5.151564e-01	ci right 5.348291e-01	k: 5250	n:10000
TBXA2R   10000 perm   1 sec   (6875 perm/sec)   p_kst 5.250000e-01   p_cons 1.233000e-01   p_joint 1.942000e-01

Joint ci ratio: 5.507529e-02	ci left: 1.965038e-01	ci right 2.076829e-01	k: 4041	n:20000
Cons ci ratio: 7.380830e-02	ci left: 1.190194e-01	ci right 1.281903e-01	k: 2471	n:20000
KS ci ratio: 2.626090e-02	ci left: 5.200021e-01	ci right 5.338901e-01	k: 10539	n:20000
TBXA2R   20000 perm   3 sec   (5972 perm/sec)   p_kst 5.269500e-01   p_cons 1.235500e-01   p_joint 2.020500e-01

Outputting figure to mutsig2_images.part000000000172/TBXA2R.2_1285_20000_0.52695_0.12355_0.20205.png
                gene_name: TBXA2R
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 77 percent done.
TBXAS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.306040e-02	ci left: 5.745671e-01	ci right 5.939838e-01	k: 5843	n:10000
Cons ci ratio: 5.719572e-02	ci left: 3.103647e-01	ci right 3.287406e-01	k: 3195	n:10000
KS ci ratio: 1.351584e-02	ci left: 8.875964e-01	ci right 8.997732e-01	k: 8938	n:10000
TBXAS1   10000 perm   2 sec   (6281 perm/sec)   p_kst 8.938000e-01   p_cons 3.195000e-01   p_joint 5.843000e-01

Outputting figure to mutsig2_images.part000000000172/TBXAS1.2_1799_10000_0.8938_0.3195_0.5843.png
                gene_name: TBXAS1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 79 percent done.
TCEAL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.468101e-02	ci left: 7.071507e-01	ci right 7.249233e-01	k: 7161	n:10000
KS ci ratio: 3.004477e-02	ci left: 6.203499e-01	ci right 6.393743e-01	k: 6299	n:10000
TCEAL2   10000 perm   2 sec   (6456 perm/sec)   p_kst 6.299000e-01   p_cons 7.161000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000172/TCEAL2.2_688_10000_0.6299_0.7161_1.png
                gene_name: TCEAL2
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
TCEAL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.861921e-02	ci left: 1.912134e-01	ci right 2.069623e-01	k: 1990	n:10000
KS ci ratio: 2.251712e-02	ci left: 7.433121e-01	ci right 7.603410e-01	k: 7519	n:10000
TCEAL3   10000 perm   1 sec   (7473 perm/sec)   p_kst 7.519000e-01   p_cons 1.990000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000172/TCEAL3.2_607_10000_0.7519_0.199_1.png
                gene_name: TCEAL3
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
TCEAL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.198004e-02	ci left: 7.523136e-01	ci right 7.691342e-01	k: 7608	n:10000
Cons ci ratio: 4.885111e-02	ci left: 3.820160e-01	ci right 4.012472e-01	k: 3916	n:10000
KS ci ratio: 1.695073e-02	ci left: 8.352108e-01	ci right 8.495891e-01	k: 8425	n:10000
TCEAL5   10000 perm   1 sec   (7074 perm/sec)   p_kst 8.425000e-01   p_cons 3.916000e-01   p_joint 7.608000e-01

Outputting figure to mutsig2_images.part000000000172/TCEAL5.2_625_10000_0.8425_0.3916_0.7608.png
                gene_name: TCEAL5
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 85 percent done.
TCEB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.818666e-02	ci left: 8.152741e-01	ci right 8.303374e-01	k: 8229	n:10000
Cons ci ratio: 1.786148e-02	ci left: 8.205599e-01	ci right 8.354485e-01	k: 8281	n:10000
KS ci ratio: 1.126523e-01	ci left: 1.018840e-01	ci right 1.141454e-01	k: 1079	n:10000
TCEB3   10000 perm   2 sec   (5645 perm/sec)   p_kst 1.079000e-01   p_cons 8.281000e-01   p_joint 8.229000e-01

Joint ci ratio: 6.764882e-02	ci left: 1.388655e-01	ci right 1.486383e-01	k: 2874	n:20000
Cons ci ratio: 1.255178e-02	ci left: 8.245694e-01	ci right 8.350345e-01	k: 16597	n:20000
KS ci ratio: 7.953495e-02	ci left: 1.039762e-01	ci right 1.126380e-01	k: 2165	n:20000
TCEB3   20000 perm   4 sec   (5042 perm/sec)   p_kst 1.082500e-01   p_cons 8.298500e-01   p_joint 1.437000e-01

Outputting figure to mutsig2_images.part000000000172/TCEB3.2_2441_20000_0.10825_0.82985_0.1437.png
                gene_name: TCEB3
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 87 percent done.
TCF23
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.648198e-02	ci left: 5.259661e-01	ci right 5.456130e-01	k: 5358	n:10000
Cons ci ratio: 7.264646e-02	ci left: 2.172413e-01	ci right 2.337190e-01	k: 2254	n:10000
KS ci ratio: 1.646289e-02	ci left: 8.429516e-01	ci right 8.570439e-01	k: 8501	n:10000
TCF23   10000 perm   1 sec   (7032 perm/sec)   p_kst 8.501000e-01   p_cons 2.254000e-01   p_joint 5.358000e-01

Outputting figure to mutsig2_images.part000000000172/TCF23.2_657_10000_0.8501_0.2254_0.5358.png
                gene_name: TCF23
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 89 percent done.
TCF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.280476e-03	ci left: 9.424271e-01	ci right 9.513103e-01	k: 9470	n:10000
Cons ci ratio: 6.196701e-02	ci left: 2.768594e-01	ci right 2.946656e-01	k: 2857	n:10000
KS ci ratio: 4.386771e-02	ci left: 4.341296e-01	ci right 4.537031e-01	k: 4439	n:10000
TCF4   10000 perm   2 sec   (6349 perm/sec)   p_kst 4.439000e-01   p_cons 2.857000e-01   p_joint 9.470000e-01

Outputting figure to mutsig2_images.part000000000172/TCF4.2_2088_10000_0.4439_0.2857_0.947.png
                gene_name: TCF4
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 91 percent done.
TCHP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.334384e-02	ci left: 7.294651e-01	ci right 7.467959e-01	k: 7382	n:10000
KS ci ratio: 4.175413e-02	ci left: 4.585802e-01	ci right 4.782382e-01	k: 4684	n:10000
TCHP   10000 perm   2 sec   (6110 perm/sec)   p_kst 4.684000e-01   p_cons 7.382000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000172/TCHP.2_1545_10000_0.4684_0.7382_1.png
                gene_name: TCHP
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
TCL1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.414688e-01	ci left: 6.623521e-02	ci right 7.641622e-02	k: 712	n:10000
Cons ci ratio: 1.538251e-02	ci left: 8.597792e-01	ci right 8.732065e-01	k: 8666	n:10000
KS ci ratio: 2.086194e-01	ci left: 3.053425e-02	ci right 3.774046e-02	k: 340	n:10000
TCL1A   10000 perm   1 sec   (7227 perm/sec)   p_kst 3.400000e-02   p_cons 8.666000e-01   p_joint 7.120000e-02

Joint ci ratio: 6.177228e-02	ci left: 1.623977e-01	ci right 1.727991e-01	k: 3351	n:20000
Cons ci ratio: 1.084794e-02	ci left: 8.624184e-01	ci right 8.718746e-01	k: 17344	n:20000
KS ci ratio: 1.431237e-01	ci left: 3.355738e-02	ci right 3.877859e-02	k: 722	n:20000
TCL1A   20000 perm   3 sec   (6266 perm/sec)   p_kst 3.610000e-02   p_cons 8.672000e-01   p_joint 1.675500e-01

Joint ci ratio: 4.503414e-02	ci left: 1.970725e-01	ci right 2.061853e-01	k: 6048	n:30000
Cons ci ratio: 8.827556e-03	ci left: 8.640836e-01	ci right 8.717783e-01	k: 26039	n:30000
KS ci ratio: 1.161681e-01	ci left: 3.443865e-02	ci right 3.871837e-02	k: 1096	n:30000
TCL1A   30000 perm   5 sec   (5913 perm/sec)   p_kst 3.653333e-02   p_cons 8.679667e-01   p_joint 2.016000e-01

Joint ci ratio: 3.149427e-02	ci left: 2.747576e-01	ci right 2.835744e-01	k: 11166	n:40000
Cons ci ratio: 7.671990e-03	ci left: 8.637847e-01	ci right 8.704619e-01	k: 34686	n:40000
KS ci ratio: 9.926255e-02	ci left: 3.565933e-02	ci right 3.940819e-02	k: 1500	n:40000
TCL1A   40000 perm   7 sec   (5686 perm/sec)   p_kst 3.750000e-02   p_cons 8.671500e-01   p_joint 2.791500e-01

Outputting figure to mutsig2_images.part000000000172/TCL1A.2_357_40000_0.0375_0.86715_0.27915.png
                gene_name: TCL1A
               theta_stop: 0.099 
                    nperm: 40000 
                     p_ks: 0.037 
        ci_ks_bounds_left: 0.036 
       ci_ks_bounds_right: 0.039 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 96 percent done.
TCL1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.640140e-02	ci left: 5.270673e-01	ci right 5.467112e-01	k: 5369	n:10000
KS ci ratio: 5.097653e-02	ci left: 3.620179e-01	ci right 3.810570e-01	k: 3715	n:10000
TCL1B   10000 perm   1 sec   (7315 perm/sec)   p_kst 3.715000e-01   p_cons 5.369000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000172/TCL1B.2_399_10000_0.3715_0.5369_1.png
                gene_name: TCL1B
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
TCP10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.683687e-03	ci left: 9.765289e-01	ci right 9.821870e-01	k: 9795	n:10000
KS ci ratio: 2.768326e-02	ci left: 6.578667e-01	ci right 6.764359e-01	k: 6672	n:10000
TCP10   10000 perm   1 sec   (7138 perm/sec)   p_kst 6.672000e-01   p_cons 9.795000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000172/TCP10.2_1009_10000_0.6672_0.9795_1.png
                gene_name: TCP10
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000172
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 172 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1702>
Subject: Job 8004611: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1702>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000173> was used as the working directory.
Started at Sun Nov 11 15:21:35 2012
Results reported at Sun Nov 11 15:32:58 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000173.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000173.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 173  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000173.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    724.31 sec.
    Max Memory :      4656 MB
    Max Swap   :      7049 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
173
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 173
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 173: processing genes 15562 - 15651
Calculating significance of each gene.
Using projection method.
15562	TCP11L1	1
15563	TCP11L2	1
15564	TCTA	3.779540e-01
15565	TCTE1	1
15566	TCTE3	1
15567	TCTEX1D1	1.465675e-02
15568	TCTEX1D2	1
15569	TCTEX1D4	1
15570	TCTN1	5.249928e-02
15571	TCTN2	1.089514e-01
15572	TCTN3	1.558200e-01
15573	TDG	1.968685e-01
15574	TDGF1	1
15575	TDO2	5.427309e-01
15576	TDP1	8.832668e-01
15577	TDP2	1
15578	TDRD1	6.158062e-01
15579	TDRD10	3.647038e-01
15580	TDRD3	3.431139e-01
15581	TDRD5	6.764027e-03
15582	TDRD6	9.294458e-01
15583	TDRD7	9.407843e-01
15584	TDRD9	8.897648e-01
15585	TDRKH	5.732964e-01
15586	TEAD1	6.511082e-01
15587	TEAD2	2.645353e-01
15588	TEAD3	1
15589	TEAD4	1
15590	TEC	3.189715e-01
15591	TECPR1	8.997543e-01
15592	TECPR2	8.475483e-01
15593	TECR	1
15594	TECRL	1.497086e-05
15595	TECTA	1
15596	TECTB	3.181042e-02
15597	TEDDM1	4.609909e-01
15598	TEF	4.717925e-01
15599	TEK	6.052831e-01
15600	TEKT1	3.356899e-01
15601	TEKT2	7.465180e-01
15602	TEKT3	1.184793e-01
15603	TEKT4	1
15604	TEKT5	3.640746e-01
15605	TELO2	1.968088e-01
15606	TENC1	4.643525e-01
15607	TEP1	9.903467e-01
15608	TEPP	6.058832e-01
15609	TERF1	2.147313e-01
15610	TERF2	1
15611	TERF2IP	1
15612	TERT	9.620387e-01
15613	TES	6.817848e-01
15614	TESC	1
15615	TESK1	1
15616	TESK2	8.536218e-01
15617	TET1	8.196293e-01
15618	TET2	6.288431e-01
15619	TET3	8.395538e-01
15620	TEX10	6.226571e-01
15621	TEX101	1
15622	TEX11	5.692793e-01
15623	TEX12	2.982278e-01
15624	TEX13A	3.991453e-04
15625	TEX13B	1
15626	TEX14	6.594227e-01
15627	TEX15	9.966867e-01
15628	TEX19	1
15629	TEX2	5.080508e-01
15630	TEX261	1
15631	TEX264	1
15632	TEX9	2.585037e-01
15633	TF	5.696605e-01
15634	TFAM	3.286165e-02
15635	TFAP2A	1
15636	TFAP2B	6.985509e-02
15637	TFAP2C	1
15638	TFAP2D	2.150182e-01
15639	TFAP2E	1
15640	TFAP4	1
15641	TFB1M	4.948388e-01
15642	TFB2M	3.596475e-01
15643	TFCP2	8.981579e-01
15644	TFCP2L1	6.487722e-01
15645	TFDP1	2.694498e-01
15646	TFDP2	2.316414e-01
15647	TFDP3	6.240011e-01
15648	TFE3	3.836676e-01
15649	TFEB	4.273712e-01
15650	TFEC	1.479973e-01
15651	TFF1	1
Done

Running MutSig 2:
Scatter job 173: processing genes 15562 - 15651
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
TDRD5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.935551e-02	ci left: 7.960815e-01	ci right 8.117411e-01	k: 8040	n:10000
Cons ci ratio: 3.443362e-02	ci left: 5.546142e-01	ci right 5.741482e-01	k: 5644	n:10000
KS ci ratio: 3.343604e-02	ci left: 5.690509e-01	ci right 5.885032e-01	k: 5788	n:10000
TDRD5   10000 perm   2 sec   (4085 perm/sec)   p_kst 5.788000e-01   p_cons 5.644000e-01   p_joint 8.040000e-01

Outputting figure to mutsig2_images.part000000000173/TDRD5.15_3010_10000_0.5788_0.5644_0.804.png
                gene_name: TDRD5
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 2 percent done.
TEX15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.348846e-02	ci left: 2.132945e-01	ci right 2.296681e-01	k: 2214	n:10000
Cons ci ratio: 6.445550e-02	ci left: 2.612176e-01	ci right 2.787166e-01	k: 2699	n:10000
KS ci ratio: 6.833256e-02	ci left: 2.390661e-01	ci right 2.560812e-01	k: 2475	n:10000
TEX15   10000 perm   3 sec   (3363 perm/sec)   p_kst 2.475000e-01   p_cons 2.699000e-01   p_joint 2.214000e-01

Outputting figure to mutsig2_images.part000000000173/TEX15.15_8386_10000_0.2475_0.2699_0.2214.png
                gene_name: TEX15
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 4 percent done.
TECTA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.440474e-02	ci left: 4.281453e-01	ci right 4.476909e-01	k: 4379	n:10000
KS ci ratio: 1.195997e-02	ci left: 9.092595e-01	ci right 9.202975e-01	k: 9149	n:10000
TECTA   10000 perm   2 sec   (4065 perm/sec)   p_kst 9.149000e-01   p_cons 4.379000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000173/TECTA.14_6558_10000_0.9149_0.4379_1.png
                gene_name: TECTA
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 5 percent done.
TET1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.765078e-01	ci left: 4.283864e-02	ci right 5.122777e-02	k: 469	n:10000
Cons ci ratio: 4.509198e-01	ci left: 5.814929e-03	ci right 9.281233e-03	k: 74	n:10000
KS ci ratio: 3.389760e-02	ci left: 5.623328e-01	ci right 5.818252e-01	k: 5721	n:10000
TET1   10000 perm   3 sec   (3996 perm/sec)   p_kst 5.721000e-01   p_cons 7.400000e-03   p_joint 4.690000e-02

Joint ci ratio: 1.763823e-01	ci left: 2.197114e-02	ci right 2.626874e-02	k: 481	n:20000
Cons ci ratio: 3.313245e-01	ci left: 5.799905e-03	ci right 8.146877e-03	k: 138	n:20000
KS ci ratio: 2.379489e-02	ci left: 5.688148e-01	ci right 5.825632e-01	k: 11514	n:20000
TET1   20000 perm   5 sec   (3707 perm/sec)   p_kst 5.757000e-01   p_cons 6.900000e-03   p_joint 2.405000e-02

Joint ci ratio: 1.259045e-01	ci left: 2.932611e-02	ci right 3.329867e-02	k: 938	n:30000
Cons ci ratio: 2.790792e-01	ci left: 5.622041e-03	ci right 7.475468e-03	k: 195	n:30000
KS ci ratio: 1.866243e-02	ci left: 5.896533e-01	ci right 6.007949e-01	k: 17857	n:30000
TET1   30000 perm   8 sec   (3591 perm/sec)   p_kst 5.952333e-01   p_cons 6.500000e-03   p_joint 3.126667e-02

Joint ci ratio: 1.031831e-01	ci left: 3.302530e-02	ci right 3.664264e-02	k: 1392	n:40000
Cons ci ratio: 2.427841e-01	ci left: 5.689000e-03	ci right 7.283918e-03	k: 258	n:40000
KS ci ratio: 1.620369e-02	ci left: 5.891683e-01	ci right 5.988181e-01	k: 23760	n:40000
TET1   40000 perm   11 sec   (3494 perm/sec)   p_kst 5.940000e-01   p_cons 6.450000e-03   p_joint 3.480000e-02

Joint ci ratio: 8.034884e-02	ci left: 4.361131e-02	ci right 4.728170e-02	k: 2271	n:50000
Cons ci ratio: 2.248862e-01	ci left: 5.360775e-03	ci right 6.737522e-03	k: 301	n:50000
KS ci ratio: 1.446187e-02	ci left: 5.907219e-01	ci right 5.993471e-01	k: 29752	n:50000
TET1   50000 perm   15 sec   (3417 perm/sec)   p_kst 5.950400e-01   p_cons 6.020000e-03   p_joint 4.542000e-02

Joint ci ratio: 7.674870e-02	ci left: 4.006526e-02	ci right 4.327926e-02	k: 2499	n:60000
Cons ci ratio: 2.062681e-01	ci left: 5.366103e-03	ci right 6.615741e-03	k: 358	n:60000
KS ci ratio: 1.322489e-02	ci left: 5.902581e-01	ci right 5.981328e-01	k: 35652	n:60000
TET1   60000 perm   18 sec   (3351 perm/sec)   p_kst 5.942000e-01   p_cons 5.966667e-03   p_joint 4.165000e-02

Joint ci ratio: 7.181253e-02	ci left: 3.936046e-02	ci right 4.230632e-02	k: 2857	n:70000
Cons ci ratio: 1.916205e-01	ci left: 5.373287e-03	ci right 6.525388e-03	k: 415	n:70000
KS ci ratio: 1.224717e-02	ci left: 5.904226e-01	ci right 5.977124e-01	k: 41585	n:70000
TET1   70000 perm   21 sec   (3295 perm/sec)   p_kst 5.940714e-01   p_cons 5.928571e-03   p_joint 4.081429e-02

Joint ci ratio: 7.355201e-02	ci left: 3.302494e-02	ci right 3.555898e-02	k: 2742	n:80000
Cons ci ratio: 1.787591e-01	ci left: 5.440749e-03	ci right 6.520550e-03	k: 477	n:80000
KS ci ratio: 1.144216e-02	ci left: 5.912508e-01	ci right 5.980674e-01	k: 47573	n:80000
TET1   80000 perm   25 sec   (3244 perm/sec)   p_kst 5.946625e-01   p_cons 5.962500e-03   p_joint 3.427500e-02

Joint ci ratio: 7.099243e-02	ci left: 3.160219e-02	ci right 3.393916e-02	k: 2948	n:90000
Cons ci ratio: 1.694496e-01	ci left: 5.410080e-03	ci right 6.422164e-03	k: 531	n:90000
KS ci ratio: 1.078496e-02	ci left: 5.915730e-01	ci right 5.979987e-01	k: 53531	n:90000
TET1   90000 perm   28 sec   (3198 perm/sec)   p_kst 5.947889e-01   p_cons 5.900000e-03   p_joint 3.275556e-02

Joint ci ratio: 5.742716e-02	ci left: 4.324005e-02	ci right 4.580645e-02	k: 4451	n:100000
Cons ci ratio: 1.600895e-01	ci left: 5.482713e-03	ci right 6.446281e-03	k: 595	n:100000
KS ci ratio: 1.021368e-02	ci left: 5.925805e-01	ci right 5.986740e-01	k: 59563	n:100000
TET1   100000 perm   32 sec   (3154 perm/sec)   p_kst 5.956300e-01   p_cons 5.950000e-03   p_joint 4.451000e-02

Joint ci ratio: 6.606983e-02	ci left: 2.998361e-02	ci right 3.204121e-02	k: 3410	n:110000
Cons ci ratio: 1.528271e-01	ci left: 5.490922e-03	ci right 6.408148e-03	k: 653	n:110000
KS ci ratio: 1.012686e-02	ci left: 5.737282e-01	ci right 5.795769e-01	k: 63432	n:110000
TET1   110000 perm   35 sec   (3113 perm/sec)   p_kst 5.766545e-01   p_cons 5.936364e-03   p_joint 3.100000e-02

Joint ci ratio: 6.269497e-02	ci left: 3.055996e-02	ci right 3.254610e-02	k: 3785	n:120000
Cons ci ratio: 1.480481e-01	ci left: 5.378168e-03	ci right 6.245976e-03	k: 696	n:120000
KS ci ratio: 9.684577e-03	ci left: 5.744156e-01	ci right 5.800140e-01	k: 69266	n:120000
TET1   120000 perm   39 sec   (3074 perm/sec)   p_kst 5.772167e-01   p_cons 5.800000e-03   p_joint 3.154167e-02

Joint ci ratio: 6.328319e-02	ci left: 2.776121e-02	ci right 2.958297e-02	k: 3726	n:130000
Cons ci ratio: 1.423428e-01	ci left: 5.387000e-03	ci right 6.219892e-03	k: 753	n:130000
KS ci ratio: 9.304526e-03	ci left: 5.745322e-01	ci right 5.799105e-01	k: 75039	n:130000
TET1   130000 perm   43 sec   (3019 perm/sec)   p_kst 5.772231e-01   p_cons 5.792308e-03   p_joint 2.866154e-02

Joint ci ratio: 5.876949e-02	ci left: 2.989408e-02	ci right 3.171114e-02	k: 4311	n:140000
Cons ci ratio: 1.367422e-01	ci left: 5.436517e-03	ci right 6.241300e-03	k: 816	n:140000
KS ci ratio: 8.970826e-03	ci left: 5.743712e-01	ci right 5.795541e-01	k: 80775	n:140000
TET1   140000 perm   47 sec   (2986 perm/sec)   p_kst 5.769643e-01   p_cons 5.828571e-03   p_joint 3.079286e-02

Joint ci ratio: 5.993554e-02	ci left: 2.689501e-02	ci right 2.856331e-02	k: 4158	n:150000
Cons ci ratio: 1.322848e-01	ci left: 5.434854e-03	ci right 6.211102e-03	k: 872	n:150000
KS ci ratio: 8.678919e-03	ci left: 5.737679e-01	ci right 5.787759e-01	k: 86441	n:150000
TET1   150000 perm   51 sec   (2951 perm/sec)   p_kst 5.762733e-01   p_cons 5.813333e-03   p_joint 2.772000e-02

Joint ci ratio: 5.876718e-02	ci left: 2.626055e-02	ci right 2.785665e-02	k: 4328	n:160000
Cons ci ratio: 1.279599e-01	ci left: 5.457974e-03	ci right 6.210103e-03	k: 932	n:160000
KS ci ratio: 8.403303e-03	ci left: 5.738492e-01	ci right 5.786980e-01	k: 92204	n:160000
TET1   160000 perm   55 sec   (2919 perm/sec)   p_kst 5.762750e-01   p_cons 5.825000e-03   p_joint 2.705000e-02

Joint ci ratio: 5.951729e-02	ci left: 2.414127e-02	ci right 2.562793e-02	k: 4229	n:170000
Cons ci ratio: 1.238452e-01	ci left: 5.495841e-03	ci right 6.227048e-03	k: 995	n:170000
KS ci ratio: 8.149631e-03	ci left: 5.740881e-01	ci right 5.787917e-01	k: 97995	n:170000
TET1   170000 perm   59 sec   (2886 perm/sec)   p_kst 5.764412e-01   p_cons 5.852941e-03   p_joint 2.487647e-02

Joint ci ratio: 5.211178e-02	ci left: 2.968297e-02	ci right 3.127664e-02	k: 5485	n:180000
Cons ci ratio: 1.202750e-01	ci left: 5.513676e-03	ci right 6.224603e-03	k: 1055	n:180000
KS ci ratio: 7.921319e-03	ci left: 5.740744e-01	ci right 5.786454e-01	k: 103745	n:180000
TET1   180000 perm   63 sec   (2855 perm/sec)   p_kst 5.763611e-01   p_cons 5.861111e-03   p_joint 3.047222e-02

Joint ci ratio: 5.122487e-02	ci left: 2.913355e-02	ci right 3.067031e-02	k: 5680	n:190000
Cons ci ratio: 1.166816e-01	ci left: 5.560565e-03	ci right 6.254641e-03	k: 1121	n:190000
KS ci ratio: 7.714837e-03	ci left: 5.738320e-01	ci right 5.782814e-01	k: 109451	n:190000
TET1   190000 perm   67 sec   (2824 perm/sec)   p_kst 5.760579e-01   p_cons 5.900000e-03   p_joint 2.989474e-02

Joint ci ratio: 4.897361e-02	ci left: 3.027930e-02	ci right 3.180433e-02	k: 6207	n:200000
Cons ci ratio: 1.137297e-01	ci left: 5.569037e-03	ci right 6.245404e-03	k: 1180	n:200000
KS ci ratio: 7.510922e-03	ci left: 5.744460e-01	ci right 5.787818e-01	k: 115323	n:200000
TET1   200000 perm   72 sec   (2794 perm/sec)   p_kst 5.766150e-01   p_cons 5.900000e-03   p_joint 3.103500e-02

Joint ci ratio: 4.735060e-02	ci left: 3.085590e-02	ci right 3.235706e-02	k: 6636	n:210000
Cons ci ratio: 1.112169e-01	ci left: 5.553751e-03	ci right 6.212381e-03	k: 1234	n:210000
KS ci ratio: 7.335142e-03	ci left: 5.741498e-01	ci right 5.783815e-01	k: 121016	n:210000
TET1   210000 perm   76 sec   (2764 perm/sec)   p_kst 5.762667e-01   p_cons 5.876190e-03   p_joint 3.160000e-02

Joint ci ratio: 4.684624e-02	ci left: 3.012239e-02	ci right 3.157182e-02	k: 6785	n:220000
Cons ci ratio: 1.085674e-01	ci left: 5.570962e-03	ci right 6.214888e-03	k: 1295	n:220000
KS ci ratio: 7.170545e-03	ci left: 5.739226e-01	ci right 5.780572e-01	k: 126718	n:220000
TET1   220000 perm   80 sec   (2735 perm/sec)   p_kst 5.759909e-01   p_cons 5.886364e-03   p_joint 3.084091e-02

Joint ci ratio: 5.689523e-02	ci left: 1.964608e-02	ci right 2.080084e-02	k: 4650	n:230000
Cons ci ratio: 1.161195e-01	ci left: 4.644037e-03	ci right 5.220722e-03	k: 1133	n:230000
KS ci ratio: 7.015050e-03	ci left: 5.738206e-01	ci right 5.778644e-01	k: 132444	n:230000
TET1   230000 perm   85 sec   (2707 perm/sec)   p_kst 5.758435e-01   p_cons 4.926087e-03   p_joint 2.021739e-02

Joint ci ratio: 5.325251e-02	ci left: 2.149087e-02	ci right 2.267071e-02	k: 5298	n:240000
Cons ci ratio: 1.132095e-01	ci left: 4.689325e-03	ci right 5.256065e-03	k: 1192	n:240000
KS ci ratio: 6.891361e-03	ci left: 5.721563e-01	ci right 5.761169e-01	k: 137793	n:240000
TET1   240000 perm   90 sec   (2681 perm/sec)   p_kst 5.741375e-01   p_cons 4.966667e-03   p_joint 2.207500e-02

Joint ci ratio: 5.286020e-02	ci left: 2.095473e-02	ci right 2.209640e-02	k: 5380	n:250000
Cons ci ratio: 1.113149e-01	ci left: 4.661143e-03	ci right 5.214431e-03	k: 1233	n:250000
KS ci ratio: 6.752978e-03	ci left: 5.721348e-01	ci right 5.760155e-01	k: 143519	n:250000
TET1   250000 perm   94 sec   (2653 perm/sec)   p_kst 5.740760e-01   p_cons 4.932000e-03   p_joint 2.152000e-02

Joint ci ratio: 5.128033e-02	ci left: 2.141680e-02	ci right 2.254774e-02	k: 5714	n:260000
Cons ci ratio: 1.091686e-01	ci left: 4.665133e-03	ci right 5.207531e-03	k: 1282	n:260000
KS ci ratio: 6.621985e-03	ci left: 5.721619e-01	ci right 5.759672e-01	k: 149257	n:260000
TET1   260000 perm   99 sec   (2629 perm/sec)   p_kst 5.740654e-01   p_cons 4.930769e-03   p_joint 2.197692e-02

Joint ci ratio: 5.037300e-02	ci left: 2.138415e-02	ci right 2.249281e-02	k: 5922	n:270000
Cons ci ratio: 1.069404e-01	ci left: 4.686948e-03	ci right 5.220060e-03	k: 1336	n:270000
KS ci ratio: 6.496608e-03	ci left: 5.723174e-01	ci right 5.760513e-01	k: 155030	n:270000
TET1   270000 perm   104 sec   (2604 perm/sec)   p_kst 5.741852e-01   p_cons 4.948148e-03   p_joint 2.193333e-02

Joint ci ratio: 4.877309e-02	ci left: 2.199972e-02	ci right 2.310305e-02	k: 6313	n:280000
Cons ci ratio: 1.048054e-01	ci left: 4.710787e-03	ci right 5.235254e-03	k: 1391	n:280000
KS ci ratio: 6.380049e-03	ci left: 5.723124e-01	ci right 5.759790e-01	k: 160761	n:280000
TET1   280000 perm   109 sec   (2580 perm/sec)   p_kst 5.741464e-01   p_cons 4.967857e-03   p_joint 2.254643e-02

Joint ci ratio: 4.834049e-02	ci left: 2.163616e-02	ci right 2.271135e-02	k: 6429	n:290000
Cons ci ratio: 1.029006e-01	ci left: 4.723001e-03	ci right 5.238692e-03	k: 1443	n:290000
KS ci ratio: 6.271580e-03	ci left: 5.721495e-01	ci right 5.757525e-01	k: 166446	n:290000
TET1   290000 perm   113 sec   (2557 perm/sec)   p_kst 5.739517e-01   p_cons 4.975862e-03   p_joint 2.216897e-02

Joint ci ratio: 4.714782e-02	ci left: 2.199203e-02	ci right 2.305722e-02	k: 6756	n:300000
Cons ci ratio: 1.011980e-01	ci left: 4.724732e-03	ci right 5.231570e-03	k: 1492	n:300000
KS ci ratio: 6.169217e-03	ci left: 5.719380e-01	ci right 5.754806e-01	k: 172113	n:300000
TET1   300000 perm   118 sec   (2533 perm/sec)   p_kst 5.737100e-01   p_cons 4.973333e-03   p_joint 2.252000e-02

Joint ci ratio: 4.679499e-02	ci left: 2.161725e-02	ci right 2.265623e-02	k: 6861	n:310000
Cons ci ratio: 9.987063e-02	ci left: 4.698106e-03	ci right 5.195089e-03	k: 1532	n:310000
KS ci ratio: 6.069463e-03	ci left: 5.719213e-01	ci right 5.754063e-01	k: 177836	n:310000
TET1   310000 perm   124 sec   (2510 perm/sec)   p_kst 5.736645e-01   p_cons 4.941935e-03   p_joint 2.213226e-02

Outputting figure to mutsig2_images.part000000000173/TET1.13_6455_310000_0.57366_0.0049419_0.022132.png
                gene_name: TET1
               theta_stop: 0.100 
                    nperm: 310000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.0049 
      ci_cons_bounds_left: 0.0047 
     ci_cons_bounds_right: 0.0052 
                  p_joint: 0.022 
     ci_joint_bounds_left: 0.022 
    ci_joint_bounds_right: 0.023 

Current progress: 7 percent done.
TECRL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.122226e-02	ci left: 6.021669e-01	ci right 6.213680e-01	k: 6118	n:10000
Cons ci ratio: 7.196689e-02	ci left: 2.204982e-01	ci right 2.370601e-01	k: 2287	n:10000
KS ci ratio: 2.432937e-02	ci left: 7.130044e-01	ci right 7.306662e-01	k: 7219	n:10000
TECRL   10000 perm   2 sec   (5828 perm/sec)   p_kst 7.219000e-01   p_cons 2.287000e-01   p_joint 6.118000e-01

Outputting figure to mutsig2_images.part000000000173/TECRL.9_1140_10000_0.7219_0.2287_0.6118.png
                gene_name: TECRL
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 9 percent done.
TFAP2D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.429991e-02	ci left: 8.761293e-01	ci right 8.888470e-01	k: 8826	n:10000
Cons ci ratio: 3.584152e-02	ci left: 5.347774e-01	ci right 5.543966e-01	k: 5446	n:10000
KS ci ratio: 1.954562e-02	ci left: 7.929363e-01	ci right 8.086881e-01	k: 8009	n:10000
TFAP2D   10000 perm   2 sec   (5807 perm/sec)   p_kst 8.009000e-01   p_cons 5.446000e-01   p_joint 8.826000e-01

Outputting figure to mutsig2_images.part000000000173/TFAP2D.9_1391_10000_0.8009_0.5446_0.8826.png
                gene_name: TFAP2D
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 11 percent done.
TDRD6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.990851e-02	ci left: 1.266956e-01	ci right 1.401187e-01	k: 1333	n:10000
Cons ci ratio: 7.188542e-02	ci left: 2.208930e-01	ci right 2.374651e-01	k: 2291	n:10000
KS ci ratio: 1.118988e-01	ci left: 1.031515e-01	ci right 1.154771e-01	k: 1092	n:10000
TDRD6   10000 perm   3 sec   (4000 perm/sec)   p_kst 1.092000e-01   p_cons 2.291000e-01   p_joint 1.333000e-01

Joint ci ratio: 7.568944e-02	ci left: 1.137564e-01	ci right 1.227549e-01	k: 2364	n:20000
Cons ci ratio: 5.124466e-02	ci left: 2.205160e-01	ci right 2.321637e-01	k: 4526	n:20000
KS ci ratio: 8.007495e-02	ci left: 1.026992e-01	ci right 1.113154e-01	k: 2139	n:20000
TDRD6   20000 perm   5 sec   (3718 perm/sec)   p_kst 1.069500e-01   p_cons 2.263000e-01   p_joint 1.182000e-01

Outputting figure to mutsig2_images.part000000000173/TDRD6.8_6307_20000_0.10695_0.2263_0.1182.png
                gene_name: TDRD6
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 12 percent done.
TENC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.284305e-02	ci left: 4.458030e-01	ci right 4.654229e-01	k: 4556	n:10000
Cons ci ratio: 5.448234e-02	ci left: 3.317063e-01	ci right 3.503864e-01	k: 3410	n:10000
KS ci ratio: 4.629413e-02	ci left: 4.078097e-01	ci right 4.272384e-01	k: 4175	n:10000
TENC1   10000 perm   2 sec   (4562 perm/sec)   p_kst 4.175000e-01   p_cons 3.410000e-01   p_joint 4.556000e-01

Outputting figure to mutsig2_images.part000000000173/TENC1.8_4455_10000_0.4175_0.341_0.4556.png
                gene_name: TENC1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 14 percent done.
TEX13A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.927855e-01	ci left: 3.586235e-02	ci right 4.360871e-02	k: 396	n:10000
Cons ci ratio: 1.052552e-01	ci left: 1.153530e-01	ci right 1.282683e-01	k: 1217	n:10000
KS ci ratio: 2.432992e-01	ci left: 2.221701e-02	ci right 2.846368e-02	k: 252	n:10000
TEX13A   10000 perm   2 sec   (5915 perm/sec)   p_kst 2.520000e-02   p_cons 1.217000e-01   p_joint 3.960000e-02

Joint ci ratio: 1.856719e-01	ci left: 1.977319e-02	ci right 2.386748e-02	k: 435	n:20000
Cons ci ratio: 7.335194e-02	ci left: 1.203479e-01	ci right 1.295615e-01	k: 2498	n:20000
KS ci ratio: 1.725682e-01	ci left: 2.297630e-02	ci right 2.736323e-02	k: 502	n:20000
TEX13A   20000 perm   4 sec   (5291 perm/sec)   p_kst 2.510000e-02   p_cons 1.249000e-01   p_joint 2.175000e-02

Joint ci ratio: 1.504302e-01	ci left: 2.046620e-02	ci right 2.382722e-02	k: 663	n:30000
Cons ci ratio: 6.229448e-02	ci left: 1.129560e-01	ci right 1.202518e-01	k: 3497	n:30000
KS ci ratio: 1.422130e-01	ci left: 2.294098e-02	ci right 2.648522e-02	k: 740	n:30000
TEX13A   30000 perm   6 sec   (5023 perm/sec)   p_kst 2.466667e-02   p_cons 1.165667e-01   p_joint 2.210000e-02

Joint ci ratio: 1.213467e-01	ci left: 2.388016e-02	ci right 2.698926e-02	k: 1016	n:40000
Cons ci ratio: 5.166161e-02	ci left: 1.225649e-01	ci right 1.290895e-01	k: 5032	n:40000
KS ci ratio: 1.225262e-01	ci left: 2.341930e-02	ci right 2.650019e-02	k: 997	n:40000
TEX13A   40000 perm   8 sec   (4870 perm/sec)   p_kst 2.492500e-02   p_cons 1.258000e-01   p_joint 2.540000e-02

Joint ci ratio: 1.209369e-01	ci left: 1.933406e-02	ci right 2.184204e-02	k: 1028	n:50000
Cons ci ratio: 4.628868e-02	ci left: 1.225288e-01	ci right 1.283548e-01	k: 6271	n:50000
KS ci ratio: 1.093889e-01	ci left: 2.366863e-02	ci right 2.642689e-02	k: 1251	n:50000
TEX13A   50000 perm   11 sec   (4475 perm/sec)   p_kst 2.502000e-02   p_cons 1.254200e-01   p_joint 2.056000e-02

Joint ci ratio: 9.585599e-02	ci left: 2.581533e-02	ci right 2.843068e-02	k: 1626	n:60000
Cons ci ratio: 4.260392e-02	ci left: 1.210094e-01	ci right 1.262937e-01	k: 7418	n:60000
KS ci ratio: 9.715263e-02	ci left: 2.513180e-02	ci right 2.771429e-02	k: 1584	n:60000
TEX13A   60000 perm   13 sec   (4445 perm/sec)   p_kst 2.640000e-02   p_cons 1.236333e-01   p_joint 2.710000e-02

Outputting figure to mutsig2_images.part000000000173/TEX13A.8_1240_60000_0.0264_0.12363_0.0271.png
                gene_name: TEX13A
               theta_stop: 0.097 
                    nperm: 60000 
                     p_ks: 0.026 
        ci_ks_bounds_left: 0.025 
       ci_ks_bounds_right: 0.028 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.027 
     ci_joint_bounds_left: 0.026 
    ci_joint_bounds_right: 0.028 

Current progress: 16 percent done.
TEP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.242968e-02	ci left: 9.028849e-01	ci right 9.142758e-01	k: 9087	n:10000
Cons ci ratio: 2.937825e-02	ci left: 6.308041e-01	ci right 6.497141e-01	k: 6403	n:10000
KS ci ratio: 2.596067e-02	ci left: 6.859711e-01	ci right 7.041151e-01	k: 6951	n:10000
TEP1   10000 perm   3 sec   (3712 perm/sec)   p_kst 6.951000e-01   p_cons 6.403000e-01   p_joint 9.087000e-01

Outputting figure to mutsig2_images.part000000000173/TEP1.7_8100_10000_0.6951_0.6403_0.9087.png
                gene_name: TEP1
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 18 percent done.
TEX14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.606605e-02	ci left: 5.316731e-01	ci right 5.513027e-01	k: 5415	n:10000
Cons ci ratio: 1.610624e-02	ci left: 8.485573e-01	ci right 8.624349e-01	k: 8556	n:10000
KS ci ratio: 4.899491e-02	ci left: 3.806225e-01	ci right 3.998415e-01	k: 3902	n:10000
TEX14   10000 perm   2 sec   (4576 perm/sec)   p_kst 3.902000e-01   p_cons 8.556000e-01   p_joint 5.415000e-01

Outputting figure to mutsig2_images.part000000000173/TEX14.7_4604_10000_0.3902_0.8556_0.5415.png
                gene_name: TEX14
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 20 percent done.
TCTN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.026288e-01	ci left: 1.400230e-02	ci right 1.908497e-02	k: 164	n:10000
Cons ci ratio: 1.793285e-01	ci left: 4.149837e-02	ci right 4.976893e-02	k: 455	n:10000
KS ci ratio: 2.989652e-01	ci left: 1.437251e-02	ci right 1.951444e-02	k: 168	n:10000
TCTN2   10000 perm   2 sec   (5805 perm/sec)   p_kst 1.680000e-02   p_cons 4.550000e-02   p_joint 1.640000e-02

Joint ci ratio: 3.221178e-01	ci left: 6.167283e-03	ci right 8.579269e-03	k: 146	n:20000
Cons ci ratio: 1.316446e-01	ci left: 3.964911e-02	ci right 4.528489e-02	k: 848	n:20000
KS ci ratio: 2.261475e-01	ci left: 1.312511e-02	ci right 1.651809e-02	k: 295	n:20000
TCTN2   20000 perm   4 sec   (5264 perm/sec)   p_kst 1.475000e-02   p_cons 4.240000e-02   p_joint 7.300000e-03

Joint ci ratio: 1.848616e-01	ci left: 1.340044e-02	ci right 1.616136e-02	k: 442	n:30000
Cons ci ratio: 1.067679e-01	ci left: 4.069970e-02	ci right 4.532266e-02	k: 1289	n:30000
KS ci ratio: 1.844395e-01	ci left: 1.346407e-02	ci right 1.623106e-02	k: 444	n:30000
TCTN2   30000 perm   6 sec   (5054 perm/sec)   p_kst 1.480000e-02   p_cons 4.296667e-02   p_joint 1.473333e-02

Joint ci ratio: 1.960075e-01	ci left: 8.929192e-03	ci right 1.089294e-02	k: 395	n:40000
Cons ci ratio: 8.974463e-02	ci left: 4.347829e-02	ci right 4.758801e-02	k: 1820	n:40000
KS ci ratio: 1.535832e-01	ci left: 1.479310e-02	ci right 1.727788e-02	k: 640	n:40000
TCTN2   40000 perm   8 sec   (4898 perm/sec)   p_kst 1.600000e-02   p_cons 4.550000e-02   p_joint 9.875000e-03

Joint ci ratio: 2.118657e-01	ci left: 6.079469e-03	ci right 7.538676e-03	k: 339	n:50000
Cons ci ratio: 7.802074e-02	ci left: 4.618183e-02	ci right 4.995086e-02	k: 2402	n:50000
KS ci ratio: 1.352616e-01	ci left: 1.540155e-02	ci right 1.765509e-02	k: 825	n:50000
TCTN2   50000 perm   10 sec   (4766 perm/sec)   p_kst 1.650000e-02   p_cons 4.804000e-02   p_joint 6.780000e-03

Joint ci ratio: 1.822672e-01	ci left: 6.952487e-03	ci right 8.362429e-03	k: 458	n:60000
Cons ci ratio: 7.545103e-02	ci left: 4.142337e-02	ci right 4.468768e-02	k: 2582	n:60000
KS ci ratio: 1.232366e-01	ci left: 1.556045e-02	ci right 1.762003e-02	k: 994	n:60000
TCTN2   60000 perm   13 sec   (4653 perm/sec)   p_kst 1.656667e-02   p_cons 4.303333e-02   p_joint 7.633333e-03

Joint ci ratio: 1.370202e-01	ci left: 1.076472e-02	ci right 1.236186e-02	k: 808	n:70000
Cons ci ratio: 6.969119e-02	ci left: 4.173382e-02	ci right 4.476133e-02	k: 3026	n:70000
KS ci ratio: 1.143877e-01	ci left: 1.555537e-02	ci right 1.745644e-02	k: 1154	n:70000
TCTN2   70000 perm   15 sec   (4546 perm/sec)   p_kst 1.648571e-02   p_cons 4.322857e-02   p_joint 1.154286e-02

Joint ci ratio: 1.347835e-01	ci left: 9.756886e-03	ci right 1.117895e-02	k: 836	n:80000
Cons ci ratio: 6.494948e-02	ci left: 4.213376e-02	ci right 4.497446e-02	k: 3483	n:80000
KS ci ratio: 1.073728e-01	ci left: 1.550688e-02	ci right 1.727845e-02	k: 1310	n:80000
TCTN2   80000 perm   18 sec   (4350 perm/sec)   p_kst 1.637500e-02   p_cons 4.353750e-02   p_joint 1.045000e-02

Joint ci ratio: 1.343774e-01	ci left: 8.736897e-03	ci right 1.000614e-02	k: 842	n:90000
Cons ci ratio: 6.148554e-02	ci left: 4.188094e-02	ci right 4.454861e-02	k: 3888	n:90000
KS ci ratio: 1.007772e-01	ci left: 1.569947e-02	ci right 1.737634e-02	k: 1487	n:90000
TCTN2   90000 perm   21 sec   (4280 perm/sec)   p_kst 1.652222e-02   p_cons 4.320000e-02   p_joint 9.355556e-03

Joint ci ratio: 1.363293e-01	ci left: 7.640697e-03	ci right 8.768108e-03	k: 819	n:100000
Cons ci ratio: 5.836642e-02	ci left: 4.189888e-02	ci right 4.442771e-02	k: 4315	n:100000
KS ci ratio: 9.561546e-02	ci left: 1.573903e-02	ci right 1.732919e-02	k: 1652	n:100000
TCTN2   100000 perm   24 sec   (4218 perm/sec)   p_kst 1.652000e-02   p_cons 4.315000e-02   p_joint 8.190000e-03

Joint ci ratio: 1.428406e-01	ci left: 6.314075e-03	ci right 7.294019e-03	k: 747	n:110000
Cons ci ratio: 5.585092e-02	ci left: 4.166522e-02	ci right 4.406805e-02	k: 4714	n:110000
KS ci ratio: 9.099548e-02	ci left: 1.583540e-02	ci right 1.735387e-02	k: 1824	n:110000
TCTN2   110000 perm   27 sec   (4150 perm/sec)   p_kst 1.658182e-02   p_cons 4.285455e-02   p_joint 6.790909e-03

Joint ci ratio: 1.498980e-01	ci left: 5.241755e-03	ci right 6.099067e-03	k: 679	n:120000
Cons ci ratio: 5.354195e-02	ci left: 4.161234e-02	ci right 4.390983e-02	k: 5130	n:120000
KS ci ratio: 8.723100e-02	ci left: 1.582755e-02	ci right 1.727928e-02	k: 1985	n:120000
TCTN2   120000 perm   29 sec   (4088 perm/sec)   p_kst 1.654167e-02   p_cons 4.275000e-02   p_joint 5.658333e-03

Joint ci ratio: 1.481884e-01	ci left: 4.956975e-03	ci right 5.757641e-03	k: 695	n:130000
Cons ci ratio: 5.153637e-02	ci left: 4.150855e-02	ci right 4.371191e-02	k: 5538	n:130000
KS ci ratio: 8.397769e-02	ci left: 1.579188e-02	ci right 1.718366e-02	k: 2142	n:130000
TCTN2   130000 perm   32 sec   (4026 perm/sec)   p_kst 1.647692e-02   p_cons 4.260000e-02   p_joint 5.346154e-03

Joint ci ratio: 1.536348e-01	ci left: 4.272873e-03	ci right 4.990738e-03	k: 647	n:140000
Cons ci ratio: 4.823514e-02	ci left: 4.396232e-02	ci right 4.614229e-02	k: 6306	n:140000
KS ci ratio: 8.122490e-02	ci left: 1.569916e-02	ci right 1.703526e-02	k: 2290	n:140000
TCTN2   140000 perm   35 sec   (3967 perm/sec)   p_kst 1.635714e-02   p_cons 4.504286e-02   p_joint 4.621429e-03

Joint ci ratio: 1.223215e-01	ci left: 6.383872e-03	ci right 7.222030e-03	k: 1019	n:150000
Cons ci ratio: 4.672099e-02	ci left: 4.377839e-02	ci right 4.587925e-02	k: 6723	n:150000
KS ci ratio: 7.831910e-02	ci left: 1.578290e-02	ci right 1.707589e-02	k: 2463	n:150000
TCTN2   150000 perm   38 sec   (3909 perm/sec)   p_kst 1.642000e-02   p_cons 4.482000e-02   p_joint 6.793333e-03

Joint ci ratio: 1.008740e-01	ci left: 8.878110e-03	ci right 9.827297e-03	k: 1495	n:160000
Cons ci ratio: 4.521519e-02	ci left: 4.385334e-02	ci right 4.588820e-02	k: 7178	n:160000
KS ci ratio: 7.593896e-02	ci left: 1.575879e-02	ci right 1.700882e-02	k: 2620	n:160000
TCTN2   160000 perm   42 sec   (3852 perm/sec)   p_kst 1.637500e-02   p_cons 4.486250e-02   p_joint 9.343750e-03

Joint ci ratio: 9.989633e-02	ci left: 8.527831e-03	ci right 9.430211e-03	k: 1525	n:170000
Cons ci ratio: 4.386726e-02	ci left: 4.387968e-02	ci right 4.585352e-02	k: 7626	n:170000
KS ci ratio: 7.366910e-02	ci left: 1.577847e-02	ci right 1.699105e-02	k: 2784	n:170000
TCTN2   170000 perm   45 sec   (3797 perm/sec)   p_kst 1.637647e-02   p_cons 4.485882e-02   p_joint 8.970588e-03

Outputting figure to mutsig2_images.part000000000173/TCTN2.6_2166_170000_0.016376_0.044859_0.0089706.png
                gene_name: TCTN2
               theta_stop: 0.100 
                    nperm: 170000 
                     p_ks: 0.016 
        ci_ks_bounds_left: 0.016 
       ci_ks_bounds_right: 0.017 
                   p_cons: 0.045 
      ci_cons_bounds_left: 0.044 
     ci_cons_bounds_right: 0.046 
                  p_joint: 0.0090 
     ci_joint_bounds_left: 0.0085 
    ci_joint_bounds_right: 0.0094 

Current progress: 21 percent done.
TF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.883829e-02	ci left: 8.046079e-01	ci right 8.200097e-01	k: 8124	n:10000
Cons ci ratio: 3.966721e-02	ci left: 4.841538e-01	ci right 5.038497e-01	k: 4940	n:10000
KS ci ratio: 2.566713e-02	ci left: 6.908102e-01	ci right 7.088733e-01	k: 6999	n:10000
TF   10000 perm   2 sec   (5443 perm/sec)   p_kst 6.999000e-01   p_cons 4.940000e-01   p_joint 8.124000e-01

Outputting figure to mutsig2_images.part000000000173/TF.6_2165_10000_0.6999_0.494_0.8124.png
                gene_name: TF
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 23 percent done.
TCTN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.639762e-02	ci left: 2.003766e-01	ci right 2.163937e-01	k: 2083	n:10000
Cons ci ratio: 8.125263e-02	ci left: 1.810727e-01	ci right 1.965090e-01	k: 1887	n:10000
KS ci ratio: 7.112090e-02	ci left: 2.246444e-01	ci right 2.413115e-01	k: 2329	n:10000
TCTN1   10000 perm   2 sec   (5709 perm/sec)   p_kst 2.329000e-01   p_cons 1.887000e-01   p_joint 2.083000e-01

Outputting figure to mutsig2_images.part000000000173/TCTN1.5_2007_10000_0.2329_0.1887_0.2083.png
                gene_name: TCTN1
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 25 percent done.
TDRD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.580538e-02	ci left: 8.532484e-01	ci right 8.669411e-01	k: 8602	n:10000
Cons ci ratio: 3.939842e-02	ci left: 4.875523e-01	ci right 5.072492e-01	k: 4974	n:10000
KS ci ratio: 1.207470e-02	ci left: 9.077165e-01	ci right 9.188414e-01	k: 9134	n:10000
TDRD1   10000 perm   2 sec   (4849 perm/sec)   p_kst 9.134000e-01   p_cons 4.974000e-01   p_joint 8.602000e-01

Outputting figure to mutsig2_images.part000000000173/TDRD1.5_3670_10000_0.9134_0.4974_0.8602.png
                gene_name: TDRD1
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 27 percent done.
TEKT4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.711640e-02	ci left: 8.325641e-01	ci right 8.470374e-01	k: 8399	n:10000
Cons ci ratio: 3.051038e-02	ci left: 6.131152e-01	ci right 6.322133e-01	k: 6227	n:10000
KS ci ratio: 3.917062e-02	ci left: 4.904513e-01	ci right 5.101485e-01	k: 5003	n:10000
TEKT4   10000 perm   2 sec   (5836 perm/sec)   p_kst 5.003000e-01   p_cons 6.227000e-01   p_joint 8.399000e-01

Outputting figure to mutsig2_images.part000000000173/TEKT4.5_1332_10000_0.5003_0.6227_0.8399.png
                gene_name: TEKT4
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 29 percent done.
TELO2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.376601e-01	ci left: 6.981515e-02	ci right 8.023404e-02	k: 749	n:10000
Cons ci ratio: 1.418936e-02	ci left: 8.777662e-01	ci right 8.904090e-01	k: 8842	n:10000
KS ci ratio: 2.696112e-01	ci left: 1.790635e-02	ci right 2.357766e-02	k: 206	n:10000
TELO2   10000 perm   2 sec   (5777 perm/sec)   p_kst 2.060000e-02   p_cons 8.842000e-01   p_joint 7.490000e-02

Joint ci ratio: 1.334607e-01	ci left: 3.858415e-02	ci right 4.415019e-02	k: 826	n:20000
Cons ci ratio: 9.638692e-03	ci left: 8.877689e-01	ci right 8.964167e-01	k: 17843	n:20000
KS ci ratio: 1.865486e-01	ci left: 1.958233e-02	ci right 2.365841e-02	k: 431	n:20000
TELO2   20000 perm   4 sec   (5121 perm/sec)   p_kst 2.155000e-02   p_cons 8.921500e-01   p_joint 4.130000e-02

Joint ci ratio: 7.612932e-02	ci left: 7.810041e-02	ci right 8.431432e-02	k: 2435	n:30000
Cons ci ratio: 7.897530e-03	ci left: 8.878922e-01	ci right 8.949651e-01	k: 26744	n:30000
KS ci ratio: 1.486093e-01	ci left: 2.097999e-02	ci right 2.437998e-02	k: 679	n:30000
TELO2   30000 perm   6 sec   (4877 perm/sec)   p_kst 2.263333e-02   p_cons 8.914667e-01   p_joint 8.116667e-02

Joint ci ratio: 8.171571e-02	ci left: 5.217274e-02	ci right 5.664222e-02	k: 2175	n:40000
Cons ci ratio: 6.862852e-03	ci left: 8.877026e-01	ci right 8.938405e-01	k: 35632	n:40000
KS ci ratio: 1.281706e-01	ci left: 2.138366e-02	ci right 2.433617e-02	k: 913	n:40000
TELO2   40000 perm   8 sec   (4714 perm/sec)   p_kst 2.282500e-02   p_cons 8.908000e-01   p_joint 5.437500e-02

Joint ci ratio: 6.690781e-02	ci left: 6.208660e-02	ci right 6.640416e-02	k: 3211	n:50000
Cons ci ratio: 5.929260e-03	ci left: 8.946667e-01	ci right 9.000070e-01	k: 44868	n:50000
KS ci ratio: 1.095235e-01	ci left: 2.361023e-02	ci right 2.636530e-02	k: 1248	n:50000
TELO2   50000 perm   11 sec   (4599 perm/sec)   p_kst 2.496000e-02   p_cons 8.973600e-01   p_joint 6.422000e-02

Joint ci ratio: 7.038846e-02	ci left: 4.741734e-02	ci right 5.089310e-02	k: 2948	n:60000
Cons ci ratio: 5.389360e-03	ci left: 8.957023e-01	ci right 9.005591e-01	k: 53889	n:60000
KS ci ratio: 1.004217e-01	ci left: 2.352156e-02	ci right 2.602470e-02	k: 1485	n:60000
TELO2   60000 perm   13 sec   (4499 perm/sec)   p_kst 2.475000e-02   p_cons 8.981500e-01   p_joint 4.913333e-02

Joint ci ratio: 6.557404e-02	ci left: 4.697647e-02	ci right 5.017537e-02	k: 3399	n:70000
Cons ci ratio: 4.997526e-03	ci left: 8.955901e-01	ci right 9.000912e-01	k: 62850	n:70000
KS ci ratio: 9.335050e-02	ci left: 2.342320e-02	ci right 2.573072e-02	k: 1719	n:70000
TELO2   70000 perm   16 sec   (4400 perm/sec)   p_kst 2.455714e-02   p_cons 8.978571e-01   p_joint 4.855714e-02

Outputting figure to mutsig2_images.part000000000173/TELO2.5_2594_70000_0.024557_0.89786_0.048557.png
                gene_name: TELO2
               theta_stop: 0.093 
                    nperm: 70000 
                     p_ks: 0.025 
        ci_ks_bounds_left: 0.023 
       ci_ks_bounds_right: 0.026 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.049 
     ci_joint_bounds_left: 0.047 
    ci_joint_bounds_right: 0.050 

Current progress: 30 percent done.
TET2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.784099e-02	ci left: 2.417346e-01	ci right 2.588111e-01	k: 2502	n:10000
Cons ci ratio: 2.084306e-02	ci left: 7.713448e-01	ci right 7.876920e-01	k: 7796	n:10000
KS ci ratio: 8.072598e-02	ci left: 1.830411e-01	ci right 1.985394e-01	k: 1907	n:10000
TET2   10000 perm   2 sec   (4247 perm/sec)   p_kst 1.907000e-01   p_cons 7.796000e-01   p_joint 2.502000e-01

Outputting figure to mutsig2_images.part000000000173/TET2.5_6134_10000_0.1907_0.7796_0.2502.png
                gene_name: TET2
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 32 percent done.
TEX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.092731e-02	ci left: 6.066862e-01	ci right 6.258460e-01	k: 6163	n:10000
Cons ci ratio: 4.681183e-02	ci left: 4.024296e-01	ci right 4.218216e-01	k: 4121	n:10000
KS ci ratio: 5.917331e-02	ci left: 2.958849e-01	ci right 3.140289e-01	k: 3049	n:10000
TEX2   10000 perm   2 sec   (5449 perm/sec)   p_kst 3.049000e-01   p_cons 4.121000e-01   p_joint 6.163000e-01

Outputting figure to mutsig2_images.part000000000173/TEX2.5_3449_10000_0.3049_0.4121_0.6163.png
                gene_name: TEX2
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 34 percent done.
TCTN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.660958e-02	ci left: 4.045217e-01	ci right 4.239283e-01	k: 4142	n:10000
Cons ci ratio: 1.846048e-02	ci left: 8.108033e-01	ci right 8.260108e-01	k: 8185	n:10000
KS ci ratio: 6.922441e-02	ci left: 2.343232e-01	ci right 2.512269e-01	k: 2427	n:10000
TCTN3   10000 perm   2 sec   (5809 perm/sec)   p_kst 2.427000e-01   p_cons 8.185000e-01   p_joint 4.142000e-01

Outputting figure to mutsig2_images.part000000000173/TCTN3.4_1880_10000_0.2427_0.8185_0.4142.png
                gene_name: TCTN3
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 36 percent done.
TDRD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.987348e-02	ci left: 1.862897e-01	ci right 2.018889e-01	k: 1940	n:10000
Cons ci ratio: 1.086341e-01	ci left: 1.089077e-01	ci right 1.215175e-01	k: 1151	n:10000
KS ci ratio: 7.350978e-02	ci left: 2.131958e-01	ci right 2.295668e-01	k: 2213	n:10000
TDRD3   10000 perm   2 sec   (5506 perm/sec)   p_kst 2.213000e-01   p_cons 1.151000e-01   p_joint 1.940000e-01

Joint ci ratio: 6.721258e-02	ci left: 1.404428e-01	ci right 1.502605e-01	k: 2906	n:20000
Cons ci ratio: 7.385945e-02	ci left: 1.188718e-01	ci right 1.280380e-01	k: 2468	n:20000
KS ci ratio: 5.123734e-02	ci left: 2.205655e-01	ci right 2.322141e-01	k: 4527	n:20000
TDRD3   20000 perm   4 sec   (4973 perm/sec)   p_kst 2.263500e-01   p_cons 1.234000e-01   p_joint 1.453000e-01

Outputting figure to mutsig2_images.part000000000173/TDRD3.4_2287_20000_0.22635_0.1234_0.1453.png
                gene_name: TDRD3
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 38 percent done.
TEC
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.475004e-02	ci left: 3.295215e-01	ci right 3.481725e-01	k: 3388	n:10000
Cons ci ratio: 9.703224e-02	ci left: 1.334506e-01	ci right 1.471597e-01	k: 1402	n:10000
KS ci ratio: 5.007201e-02	ci left: 3.703732e-01	ci right 3.894968e-01	k: 3799	n:10000
TEC   10000 perm   2 sec   (6115 perm/sec)   p_kst 3.799000e-01   p_cons 1.402000e-01   p_joint 3.388000e-01

Outputting figure to mutsig2_images.part000000000173/TEC.3_1964_10000_0.3799_0.1402_0.3388.png
                gene_name: TEC
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 39 percent done.
TECPR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.535413e-02	ci left: 3.246562e-01	ci right 3.432406e-01	k: 3339	n:10000
Cons ci ratio: 8.446737e-02	ci left: 1.696626e-01	ci right 1.847259e-01	k: 1771	n:10000
KS ci ratio: 4.192217e-02	ci left: 4.565833e-01	ci right 4.762363e-01	k: 4664	n:10000
TECPR2   10000 perm   2 sec   (4945 perm/sec)   p_kst 4.664000e-01   p_cons 1.771000e-01   p_joint 3.339000e-01

Outputting figure to mutsig2_images.part000000000173/TECPR2.4_4327_10000_0.4664_0.1771_0.3339.png
                gene_name: TECPR2
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 41 percent done.
TECTB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.938332e-02	ci left: 2.943978e-01	ci right 3.125168e-01	k: 3034	n:10000
Cons ci ratio: 1.700814e-02	ci left: 8.342946e-01	ci right 8.487059e-01	k: 8416	n:10000
KS ci ratio: 7.852074e-02	ci left: 1.916074e-01	ci right 2.073681e-01	k: 1994	n:10000
TECTB   10000 perm   2 sec   (6201 perm/sec)   p_kst 1.994000e-01   p_cons 8.416000e-01   p_joint 3.034000e-01

Outputting figure to mutsig2_images.part000000000173/TECTB.4_1030_10000_0.1994_0.8416_0.3034.png
                gene_name: TECTB
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 43 percent done.
TEK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.258349e-02	ci left: 7.421999e-01	ci right 7.592538e-01	k: 7508	n:10000
Cons ci ratio: 4.899491e-02	ci left: 3.806225e-01	ci right 3.998415e-01	k: 3902	n:10000
KS ci ratio: 1.512217e-02	ci left: 8.637614e-01	ci right 8.770220e-01	k: 8705	n:10000
TEK   10000 perm   2 sec   (5223 perm/sec)   p_kst 8.705000e-01   p_cons 3.902000e-01   p_joint 7.508000e-01

Outputting figure to mutsig2_images.part000000000173/TEK.4_3467_10000_0.8705_0.3902_0.7508.png
                gene_name: TEK
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 45 percent done.
TEKT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.026393e-03	ci left: 9.738693e-01	ci right 9.798485e-01	k: 9770	n:10000
KS ci ratio: 3.013503e-02	ci left: 6.189430e-01	ci right 6.379821e-01	k: 6285	n:10000
TEKT3   10000 perm   2 sec   (5994 perm/sec)   p_kst 6.285000e-01   p_cons 9.770000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000173/TEKT3.4_1501_10000_0.6285_0.977_1.png
                gene_name: TEKT3
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 46 percent done.
TET3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.796083e-02	ci left: 3.907768e-01	ci right 4.100813e-01	k: 4004	n:10000
Cons ci ratio: 2.322310e-02	ci left: 7.314859e-01	ci right 7.487740e-01	k: 7402	n:10000
KS ci ratio: 8.125263e-02	ci left: 1.810727e-01	ci right 1.965090e-01	k: 1887	n:10000
TET3   10000 perm   2 sec   (4665 perm/sec)   p_kst 1.887000e-01   p_cons 7.402000e-01   p_joint 4.004000e-01

Outputting figure to mutsig2_images.part000000000173/TET3.4_5019_10000_0.1887_0.7402_0.4004.png
                gene_name: TET3
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 48 percent done.
TFAP2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.371106e-02	ci left: 5.650398e-01	ci right 5.845166e-01	k: 5748	n:10000
Cons ci ratio: 7.778311e-03	ci left: 9.582750e-01	ci right 9.658527e-01	k: 9622	n:10000
KS ci ratio: 5.845539e-02	ci left: 3.010409e-01	ci right 3.192698e-01	k: 3101	n:10000
TFAP2B   10000 perm   2 sec   (5979 perm/sec)   p_kst 3.101000e-01   p_cons 9.622000e-01   p_joint 5.748000e-01

Outputting figure to mutsig2_images.part000000000173/TFAP2B.4_1411_10000_0.3101_0.9622_0.5748.png
                gene_name: TFAP2B
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.58 

Current progress: 50 percent done.
TFB1M
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.605321e-03	ci left: 9.942123e-01	ci right 9.968864e-01	k: 9957	n:10000
KS ci ratio: 2.805179e-02	ci left: 6.519282e-01	ci right 6.705778e-01	k: 6613	n:10000
TFB1M   10000 perm   2 sec   (6188 perm/sec)   p_kst 6.613000e-01   p_cons 9.957000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000173/TFB1M.4_1069_10000_0.6613_0.9957_1.png
                gene_name: TFB1M
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 1.00 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 1.00 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 52 percent done.
TCTEX1D1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.692518e-02	ci left: 8.356181e-01	ci right 8.499816e-01	k: 8429	n:10000
KS ci ratio: 1.150929e-02	ci left: 9.152306e-01	ci right 9.259229e-01	k: 9207	n:10000
TCTEX1D1   10000 perm   2 sec   (6527 perm/sec)   p_kst 9.207000e-01   p_cons 8.429000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000173/TCTEX1D1.3_556_10000_0.9207_0.8429_1.png
                gene_name: TCTEX1D1
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 54 percent done.
TDG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.265993e-01	ci left: 1.188149e-02	ci right 1.660771e-02	k: 141	n:10000
Cons ci ratio: 4.337666e-01	ci left: 6.348452e-03	ci right 9.946939e-03	k: 80	n:10000
KS ci ratio: 4.553173e-02	ci left: 4.158821e-01	ci right 4.353612e-01	k: 4256	n:10000
TDG   10000 perm   2 sec   (6225 perm/sec)   p_kst 4.256000e-01   p_cons 8.000000e-03   p_joint 1.410000e-02

Joint ci ratio: 1.156747e-01	ci left: 5.115076e-02	ci right 5.747960e-02	k: 1085	n:20000
Cons ci ratio: 3.232272e-01	ci left: 6.121310e-03	ci right 8.525270e-03	k: 145	n:20000
KS ci ratio: 3.207062e-02	ci left: 4.206796e-01	ci right 4.344415e-01	k: 8551	n:20000
TDG   20000 perm   4 sec   (5524 perm/sec)   p_kst 4.275500e-01   p_cons 7.250000e-03   p_joint 5.425000e-02

Joint ci ratio: 7.887557e-02	ci left: 7.305854e-02	ci right 7.909053e-02	k: 2281	n:30000
Cons ci ratio: 2.530818e-01	ci left: 6.929423e-03	ci right 8.967601e-03	k: 237	n:30000
KS ci ratio: 2.665077e-02	ci left: 4.133749e-01	ci right 4.245741e-01	k: 12569	n:30000
TDG   30000 perm   6 sec   (5254 perm/sec)   p_kst 4.189667e-01   p_cons 7.900000e-03   p_joint 7.603333e-02

Joint ci ratio: 8.284920e-02	ci left: 5.080001e-02	ci right 5.521516e-02	k: 2119	n:40000
Cons ci ratio: 2.254682e-01	ci left: 6.654309e-03	ci right 8.368353e-03	k: 299	n:40000
KS ci ratio: 2.317169e-02	ci left: 4.122117e-01	ci right 4.219004e-01	k: 16682	n:40000
TDG   40000 perm   8 sec   (5081 perm/sec)   p_kst 4.170500e-01   p_cons 7.475000e-03   p_joint 5.297500e-02

Joint ci ratio: 9.810975e-02	ci left: 2.942001e-02	ci right 3.247477e-02	k: 1546	n:50000
Cons ci ratio: 2.013950e-01	ci left: 6.762465e-03	ci right 8.295544e-03	k: 375	n:50000
KS ci ratio: 2.074733e-02	ci left: 4.122138e-01	ci right 4.208759e-01	k: 20827	n:50000
TDG   50000 perm   10 sec   (4945 perm/sec)   p_kst 4.165400e-01   p_cons 7.500000e-03   p_joint 3.092000e-02

Joint ci ratio: 8.949703e-02	ci left: 2.959497e-02	ci right 3.238397e-02	k: 1858	n:60000
Cons ci ratio: 1.801051e-01	ci left: 7.127562e-03	ci right 8.553994e-03	k: 469	n:60000
KS ci ratio: 1.895106e-02	ci left: 4.123016e-01	ci right 4.202065e-01	k: 24975	n:60000
TDG   60000 perm   12 sec   (4828 perm/sec)   p_kst 4.162500e-01   p_cons 7.816667e-03   p_joint 3.096667e-02

Joint ci ratio: 8.317206e-02	ci left: 2.947643e-02	ci right 3.204838e-02	k: 2152	n:70000
Cons ci ratio: 1.655823e-01	ci left: 7.284886e-03	ci right 8.613531e-03	k: 555	n:70000
KS ci ratio: 1.753581e-02	ci left: 4.128587e-01	ci right 4.201768e-01	k: 29156	n:70000
TDG   70000 perm   15 sec   (4723 perm/sec)   p_kst 4.165143e-01   p_cons 7.928571e-03   p_joint 3.074286e-02

Joint ci ratio: 7.448498e-02	ci left: 3.221471e-02	ci right 3.471928e-02	k: 2676	n:80000
Cons ci ratio: 1.553111e-01	ci left: 7.286159e-03	ci right 8.524927e-03	k: 631	n:80000
KS ci ratio: 1.637092e-02	ci left: 4.140546e-01	ci right 4.209014e-01	k: 33398	n:80000
TDG   80000 perm   17 sec   (4627 perm/sec)   p_kst 4.174750e-01   p_cons 7.887500e-03   p_joint 3.345000e-02

Joint ci ratio: 7.389172e-02	ci left: 2.920065e-02	ci right 3.145198e-02	k: 2728	n:90000
Cons ci ratio: 1.471608e-01	ci left: 7.246315e-03	ci right 8.407967e-03	k: 703	n:90000
KS ci ratio: 1.546143e-02	ci left: 4.134096e-01	ci right 4.198624e-01	k: 37497	n:90000
TDG   90000 perm   20 sec   (4534 perm/sec)   p_kst 4.166333e-01   p_cons 7.811111e-03   p_joint 3.031111e-02

Joint ci ratio: 7.021006e-02	ci left: 2.916760e-02	ci right 3.129976e-02	k: 3022	n:100000
Cons ci ratio: 1.393599e-01	ci left: 7.302678e-03	ci right 8.406155e-03	k: 784	n:100000
KS ci ratio: 1.466421e-02	ci left: 4.137017e-01	ci right 4.198231e-01	k: 41676	n:100000
TDG   100000 perm   22 sec   (4449 perm/sec)   p_kst 4.167600e-01   p_cons 7.840000e-03   p_joint 3.022000e-02

Joint ci ratio: 4.366252e-02	ci left: 6.678012e-02	ci right 6.976996e-02	k: 7509	n:110000
Cons ci ratio: 1.337753e-01	ci left: 7.227064e-03	ci right 8.271868e-03	k: 851	n:110000
KS ci ratio: 1.398588e-02	ci left: 4.137025e-01	ci right 4.195383e-01	k: 45828	n:110000
TDG   110000 perm   25 sec   (4367 perm/sec)   p_kst 4.166182e-01   p_cons 7.736364e-03   p_joint 6.826364e-02

Joint ci ratio: 4.173192e-02	ci left: 6.706056e-02	ci right 6.992700e-02	k: 8218	n:120000
Cons ci ratio: 1.274908e-01	ci left: 7.318084e-03	ci right 8.322587e-03	k: 937	n:120000
KS ci ratio: 1.339442e-02	ci left: 4.136837e-01	ci right 4.192704e-01	k: 49977	n:120000
TDG   120000 perm   28 sec   (4292 perm/sec)   p_kst 4.164750e-01   p_cons 7.808333e-03   p_joint 6.848333e-02

Joint ci ratio: 4.008488e-02	ci left: 6.714790e-02	ci right 6.990216e-02	k: 8907	n:130000
Cons ci ratio: 1.218962e-01	ci left: 7.410990e-03	ci right 8.380385e-03	k: 1025	n:130000
KS ci ratio: 1.287074e-02	ci left: 4.137260e-01	ci right 4.190931e-01	k: 54133	n:130000
TDG   130000 perm   31 sec   (4219 perm/sec)   p_kst 4.164077e-01   p_cons 7.884615e-03   p_joint 6.851538e-02

Joint ci ratio: 3.867490e-02	ci left: 6.704061e-02	ci right 6.969158e-02	k: 9570	n:140000
Cons ci ratio: 1.169259e-01	ci left: 7.498383e-03	ci right 8.436453e-03	k: 1114	n:140000
KS ci ratio: 1.240368e-02	ci left: 4.137803e-01	ci right 4.189518e-01	k: 58291	n:140000
TDG   140000 perm   34 sec   (4150 perm/sec)   p_kst 4.163643e-01   p_cons 7.957143e-03   p_joint 6.835714e-02

Joint ci ratio: 5.459565e-02	ci left: 3.231878e-02	ci right 3.413932e-02	k: 4983	n:150000
Cons ci ratio: 1.125178e-01	ci left: 7.574818e-03	ci right 8.484353e-03	k: 1203	n:150000
KS ci ratio: 1.198157e-02	ci left: 4.139303e-01	ci right 4.189263e-01	k: 62464	n:150000
TDG   150000 perm   37 sec   (4083 perm/sec)   p_kst 4.164267e-01   p_cons 8.020000e-03   p_joint 3.322000e-02

Joint ci ratio: 5.533402e-02	ci left: 2.957032e-02	ci right 3.125926e-02	k: 4865	n:160000
Cons ci ratio: 1.084467e-01	ci left: 7.660522e-03	ci right 8.544941e-03	k: 1295	n:160000
KS ci ratio: 1.159802e-02	ci left: 4.141391e-01	ci right 4.189765e-01	k: 66649	n:160000
TDG   160000 perm   40 sec   (4017 perm/sec)   p_kst 4.165563e-01   p_cons 8.093750e-03   p_joint 3.040625e-02

Joint ci ratio: 5.373619e-02	ci left: 2.953670e-02	ci right 3.117349e-02	k: 5159	n:170000
Cons ci ratio: 1.051702e-01	ci left: 7.679375e-03	ci right 8.537527e-03	k: 1377	n:170000
KS ci ratio: 1.124950e-02	ci left: 4.143079e-01	ci right 4.190008e-01	k: 70831	n:170000
TDG   170000 perm   43 sec   (3954 perm/sec)   p_kst 4.166529e-01   p_cons 8.100000e-03   p_joint 3.034706e-02

Joint ci ratio: 5.230385e-02	ci left: 2.946905e-02	ci right 3.105724e-02	k: 5446	n:180000
Cons ci ratio: 1.025285e-01	ci left: 7.642346e-03	ci right 8.473615e-03	k: 1449	n:180000
KS ci ratio: 1.093749e-02	ci left: 4.141546e-01	ci right 4.187148e-01	k: 74958	n:180000
TDG   180000 perm   46 sec   (3897 perm/sec)   p_kst 4.164333e-01   p_cons 8.050000e-03   p_joint 3.025556e-02

Joint ci ratio: 5.093904e-02	ci left: 2.945582e-02	ci right 3.100066e-02	k: 5742	n:190000
Cons ci ratio: 9.991097e-02	ci left: 7.635120e-03	ci right 8.443156e-03	k: 1526	n:190000
KS ci ratio: 1.065239e-02	ci left: 4.139139e-01	ci right 4.183519e-01	k: 79065	n:190000
TDG   190000 perm   49 sec   (3841 perm/sec)   p_kst 4.161316e-01   p_cons 8.031579e-03   p_joint 3.022105e-02

Outputting figure to mutsig2_images.part000000000173/TDG.3_1273_190000_0.41613_0.0080316_0.030221.png
                gene_name: TDG
               theta_stop: 0.100 
                    nperm: 190000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.0080 
      ci_cons_bounds_left: 0.0076 
     ci_cons_bounds_right: 0.0084 
                  p_joint: 0.030 
     ci_joint_bounds_left: 0.029 
    ci_joint_bounds_right: 0.031 

Current progress: 55 percent done.
TEAD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.172038e-02	ci left: 7.566645e-01	ci right 7.733809e-01	k: 7651	n:10000
KS ci ratio: 2.603417e-02	ci left: 6.847616e-01	ci right 7.029254e-01	k: 6939	n:10000
TEAD2   10000 perm   2 sec   (6109 perm/sec)   p_kst 6.939000e-01   p_cons 7.651000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000173/TEAD2.3_1388_10000_0.6939_0.7651_1.png
                gene_name: TEAD2
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 57 percent done.
TEKT5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.470529e-02	ci left: 7.067471e-01	ci right 7.245272e-01	k: 7157	n:10000
KS ci ratio: 2.643313e-02	ci left: 6.782109e-01	ci right 6.964798e-01	k: 6874	n:10000
TEKT5   10000 perm   2 sec   (6159 perm/sec)   p_kst 6.874000e-01   p_cons 7.157000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000173/TEKT5.3_1486_10000_0.6874_0.7157_1.png
                gene_name: TEKT5
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 59 percent done.
TERF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.455362e-02	ci left: 7.092699e-01	ci right 7.270028e-01	k: 7182	n:10000
Cons ci ratio: 5.440970e-02	ci left: 3.323022e-01	ci right 3.509901e-01	k: 3416	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
TERF1   10000 perm   2 sec   (4903 perm/sec)   p_kst 1   p_cons 3.416000e-01   p_joint 7.182000e-01

Outputting figure to mutsig2_images.part000000000173/TERF1.3_1360_10000_1_0.3416_0.7182.png
                gene_name: TERF1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 61 percent done.
TERT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.175954e-01	ci left: 9.408985e-02	ci right 1.059443e-01	k: 999	n:10000
Cons ci ratio: 7.651358e-02	ci left: 1.998838e-01	ci right 2.158868e-01	k: 2078	n:10000
KS ci ratio: 1.209147e-01	ci left: 8.932164e-02	ci right 1.009155e-01	k: 950	n:10000
TERT   10000 perm   2 sec   (5138 perm/sec)   p_kst 9.500000e-02   p_cons 2.078000e-01   p_joint 9.990000e-02

Joint ci ratio: 8.979208e-02	ci left: 8.308030e-02	ci right 9.094026e-02	k: 1739	n:20000
Cons ci ratio: 5.427699e-02	ci left: 2.012049e-01	ci right 2.124805e-01	k: 4136	n:20000
KS ci ratio: 8.508172e-02	ci left: 9.185310e-02	ci right 1.000648e-01	k: 1918	n:20000
TERT   20000 perm   4 sec   (4590 perm/sec)   p_kst 9.590000e-02   p_cons 2.068000e-01   p_joint 8.695000e-02

Outputting figure to mutsig2_images.part000000000173/TERT.3_3463_20000_0.0959_0.2068_0.08695.png
                gene_name: TERT
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.096 
        ci_ks_bounds_left: 0.092 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.087 
     ci_joint_bounds_left: 0.083 
    ci_joint_bounds_right: 0.091 

Current progress: 62 percent done.
TEX10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.649139e-02	ci left: 1.629794e-01	ci right 1.778132e-01	k: 1703	n:10000
Cons ci ratio: 1.774222e-02	ci left: 8.224919e-01	ci right 8.373154e-01	k: 8300	n:10000
KS ci ratio: 1.518144e-01	ci left: 5.773721e-02	ci right 6.731959e-02	k: 624	n:10000
TEX10   10000 perm   2 sec   (5481 perm/sec)   p_kst 6.240000e-02   p_cons 8.300000e-01   p_joint 1.703000e-01

Joint ci ratio: 3.238708e-02	ci left: 4.158903e-01	ci right 4.296321e-01	k: 8455	n:20000
Cons ci ratio: 1.245835e-02	ci left: 8.266948e-01	ci right 8.371085e-01	k: 16639	n:20000
KS ci ratio: 1.061339e-01	ci left: 6.045150e-02	ci right 6.727598e-02	k: 1276	n:20000
TEX10   20000 perm   4 sec   (4870 perm/sec)   p_kst 6.380000e-02   p_cons 8.319500e-01   p_joint 4.227500e-01

Joint ci ratio: 4.169641e-02	ci left: 2.227992e-01	ci right 2.323203e-01	k: 6826	n:30000
Cons ci ratio: 1.055835e-02	ci left: 8.168835e-01	ci right 8.255875e-01	k: 24638	n:30000
KS ci ratio: 8.635796e-02	ci left: 6.148468e-02	ci right 6.706674e-02	k: 1927	n:30000
TEX10   30000 perm   6 sec   (4677 perm/sec)   p_kst 6.423333e-02   p_cons 8.212667e-01   p_joint 2.275333e-01

Outputting figure to mutsig2_images.part000000000173/TEX10.3_2859_30000_0.064233_0.82127_0.22753.png
                gene_name: TEX10
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.064 
        ci_ks_bounds_left: 0.061 
       ci_ks_bounds_right: 0.067 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 64 percent done.
TEX11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.732659e-02	ci left: 1.603269e-01	ci right 1.750672e-01	k: 1676	n:10000
Cons ci ratio: 6.167987e-02	ci left: 2.787412e-01	ci right 2.965826e-01	k: 2876	n:10000
KS ci ratio: 1.320333e-01	ci left: 7.562816e-02	ci right 8.641740e-02	k: 809	n:10000
TEX11   10000 perm   2 sec   (5472 perm/sec)   p_kst 8.090000e-02   p_cons 2.876000e-01   p_joint 1.676000e-01

Joint ci ratio: 6.125707e-02	ci left: 1.647186e-01	ci right 1.751776e-01	k: 3398	n:20000
Cons ci ratio: 4.485980e-02	ci left: 2.700609e-01	ci right 2.825042e-01	k: 5525	n:20000
KS ci ratio: 9.280368e-02	ci left: 7.808672e-02	ci right 8.573535e-02	k: 1637	n:20000
TEX11   20000 perm   4 sec   (4922 perm/sec)   p_kst 8.185000e-02   p_cons 2.762500e-01   p_joint 1.699000e-01

Outputting figure to mutsig2_images.part000000000173/TEX11.3_2980_20000_0.08185_0.27625_0.1699.png
                gene_name: TEX11
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.082 
        ci_ks_bounds_left: 0.078 
       ci_ks_bounds_right: 0.086 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.18 

Current progress: 66 percent done.
TFAM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.822641e-02	ci left: 5.026508e-01	ci right 5.223419e-01	k: 5125	n:10000
Cons ci ratio: 2.550231e-02	ci left: 6.935327e-01	ci right 7.115492e-01	k: 7026	n:10000
KS ci ratio: 5.311696e-02	ci left: 3.431304e-01	ci right 3.619556e-01	k: 3525	n:10000
TFAM   10000 perm   2 sec   (6426 perm/sec)   p_kst 3.525000e-01   p_cons 7.026000e-01   p_joint 5.125000e-01

Outputting figure to mutsig2_images.part000000000173/TFAM.3_769_10000_0.3525_0.7026_0.5125.png
                gene_name: TFAM
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 68 percent done.
TFDP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.612419e-02	ci left: 5.308720e-01	ci right 5.505042e-01	k: 5407	n:10000
Cons ci ratio: 6.130578e-02	ci left: 2.812177e-01	ci right 2.991047e-01	k: 2901	n:10000
KS ci ratio: 4.480377e-02	ci left: 4.237578e-01	ci right 4.432810e-01	k: 4335	n:10000
TFDP1   10000 perm   2 sec   (6191 perm/sec)   p_kst 4.335000e-01   p_cons 2.901000e-01   p_joint 5.407000e-01

Outputting figure to mutsig2_images.part000000000173/TFDP1.3_1277_10000_0.4335_0.2901_0.5407.png
                gene_name: TFDP1
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 70 percent done.
TFDP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.225205e-02	ci left: 4.526899e-01	ci right 4.723320e-01	k: 4625	n:10000
Cons ci ratio: 5.278129e-02	ci left: 3.460122e-01	ci right 3.648721e-01	k: 3554	n:10000
KS ci ratio: 6.440648e-02	ci left: 2.615144e-01	ci right 2.790196e-01	k: 2702	n:10000
TFDP2   10000 perm   2 sec   (6240 perm/sec)   p_kst 2.702000e-01   p_cons 3.554000e-01   p_joint 4.625000e-01

Outputting figure to mutsig2_images.part000000000173/TFDP2.3_1498_10000_0.2702_0.3554_0.4625.png
                gene_name: TFDP2
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 71 percent done.
TFEC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.104853e-01	ci left: 1.055899e-01	ci right 1.180372e-01	k: 1117	n:10000
Cons ci ratio: 7.623591e-02	ci left: 2.010665e-01	ci right 2.171033e-01	k: 2090	n:10000
KS ci ratio: 1.391704e-01	ci left: 6.836336e-02	ci right 7.868673e-02	k: 734	n:10000
TFEC   10000 perm   2 sec   (6481 perm/sec)   p_kst 7.340000e-02   p_cons 2.090000e-01   p_joint 1.117000e-01

Joint ci ratio: 8.527848e-02	ci left: 9.146078e-02	ci right 9.965724e-02	k: 1910	n:20000
Cons ci ratio: 5.423567e-02	ci left: 2.014523e-01	ci right 2.127330e-01	k: 4141	n:20000
KS ci ratio: 9.988490e-02	ci left: 6.791774e-02	ci right 7.510743e-02	k: 1429	n:20000
TFEC   20000 perm   3 sec   (5758 perm/sec)   p_kst 7.145000e-02   p_cons 2.070500e-01   p_joint 9.550000e-02

Outputting figure to mutsig2_images.part000000000173/TFEC.3_1072_20000_0.07145_0.20705_0.0955.png
                gene_name: TFEC
               theta_stop: 0.100 
                    nperm: 20000 
                     p_ks: 0.071 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.075 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.096 
     ci_joint_bounds_left: 0.091 
    ci_joint_bounds_right: 0.100 

Current progress: 73 percent done.
TDO2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.071569e-02	ci left: 7.734721e-01	ci right 7.897635e-01	k: 7817	n:10000
KS ci ratio: 2.620585e-02	ci left: 6.819395e-01	ci right 7.001491e-01	k: 6911	n:10000
TDO2   10000 perm   1 sec   (6791 perm/sec)   p_kst 6.911000e-01   p_cons 7.817000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000173/TDO2.2_1269_10000_0.6911_0.7817_1.png
                gene_name: TDO2
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
TDRD10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.150929e-02	ci left: 9.152306e-01	ci right 9.259229e-01	k: 9207	n:10000
Cons ci ratio: 2.010768e-02	ci left: 7.836063e-01	ci right 7.996234e-01	k: 7917	n:10000
KS ci ratio: 5.500759e-02	ci left: 3.274362e-01	ci right 3.460590e-01	k: 3367	n:10000
TDRD10   10000 perm   2 sec   (6460 perm/sec)   p_kst 3.367000e-01   p_cons 7.917000e-01   p_joint 9.207000e-01

Outputting figure to mutsig2_images.part000000000173/TDRD10.2_1182_10000_0.3367_0.7917_0.9207.png
                gene_name: TDRD10
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 77 percent done.
TDRD7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.809928e-02	ci left: 8.166970e-01	ci right 8.317137e-01	k: 8243	n:10000
Cons ci ratio: 4.535527e-02	ci left: 4.177760e-01	ci right 4.372662e-01	k: 4275	n:10000
KS ci ratio: 3.809659e-02	ci left: 5.043512e-01	ci right 5.240405e-01	k: 5142	n:10000
TDRD7   10000 perm   2 sec   (5779 perm/sec)   p_kst 5.142000e-01   p_cons 4.275000e-01   p_joint 8.243000e-01

Outputting figure to mutsig2_images.part000000000173/TDRD7.2_3361_10000_0.5142_0.4275_0.8243.png
                gene_name: TDRD7
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 79 percent done.
TDRD9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.621107e-02	ci left: 3.179062e-01	ci right 3.363946e-01	k: 3271	n:10000
Cons ci ratio: 6.860876e-02	ci left: 2.375838e-01	ci right 2.545644e-01	k: 2460	n:10000
KS ci ratio: 1.107083e-01	ci left: 1.051997e-01	ci right 1.176277e-01	k: 1113	n:10000
TDRD9   10000 perm   2 sec   (5402 perm/sec)   p_kst 1.113000e-01   p_cons 2.460000e-01   p_joint 3.271000e-01

Joint ci ratio: 5.091043e-02	ci left: 2.227949e-01	ci right 2.344841e-01	k: 4572	n:20000
Cons ci ratio: 4.861896e-02	ci left: 2.392997e-01	ci right 2.512744e-01	k: 4905	n:20000
KS ci ratio: 7.763852e-02	ci left: 1.086438e-01	ci right 1.174690e-01	k: 2260	n:20000
TDRD9   20000 perm   4 sec   (4912 perm/sec)   p_kst 1.130000e-01   p_cons 2.452500e-01   p_joint 2.286000e-01

Outputting figure to mutsig2_images.part000000000173/TDRD9.2_4293_20000_0.113_0.24525_0.2286.png
                gene_name: TDRD9
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 80 percent done.
TDRKH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.373175e-02	ci left: 5.647390e-01	ci right 5.842175e-01	k: 5745	n:10000
KS ci ratio: 3.411267e-02	ci left: 5.592250e-01	ci right 5.787348e-01	k: 5690	n:10000
TDRKH   10000 perm   2 sec   (6292 perm/sec)   p_kst 5.690000e-01   p_cons 5.745000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000173/TDRKH.2_1734_10000_0.569_0.5745_1.png
                gene_name: TDRKH
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
TECPR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.348616e-01	ci left: 7.262363e-02	ci right 8.322381e-02	k: 778	n:10000
Cons ci ratio: 5.252887e-02	ci left: 3.481986e-01	ci right 3.670844e-01	k: 3576	n:10000
KS ci ratio: 1.164983e-01	ci left: 9.574517e-02	ci right 1.076880e-01	k: 1016	n:10000
TECPR1   10000 perm   2 sec   (5604 perm/sec)   p_kst 1.016000e-01   p_cons 3.576000e-01   p_joint 7.780000e-02

Joint ci ratio: 9.973475e-02	ci left: 6.811311e-02	ci right 7.531201e-02	k: 1433	n:20000
Cons ci ratio: 3.711110e-02	ci left: 3.514016e-01	ci right 3.647397e-01	k: 7161	n:20000
KS ci ratio: 8.142351e-02	ci left: 9.960579e-02	ci right 1.081098e-01	k: 2076	n:20000
TECPR1   20000 perm   4 sec   (5002 perm/sec)   p_kst 1.038000e-01   p_cons 3.580500e-01   p_joint 7.165000e-02

Outputting figure to mutsig2_images.part000000000173/TECPR1.2_3594_20000_0.1038_0.35805_0.07165.png
                gene_name: TECPR1
               theta_stop: 0.100 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.100 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.072 
     ci_joint_bounds_left: 0.068 
    ci_joint_bounds_right: 0.075 

Current progress: 84 percent done.
TEKT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.067756e-03	ci left: 9.649925e-01	ci right 9.719311e-01	k: 9686	n:10000
Cons ci ratio: 2.194382e-02	ci left: 7.529207e-01	ci right 7.697268e-01	k: 7614	n:10000
KS ci ratio: 1.185996e-02	ci left: 9.105972e-01	ci right 9.215590e-01	k: 9162	n:10000
TEKT1   10000 perm   2 sec   (6547 perm/sec)   p_kst 9.162000e-01   p_cons 7.614000e-01   p_joint 9.686000e-01

Outputting figure to mutsig2_images.part000000000173/TEKT1.2_1285_10000_0.9162_0.7614_0.9686.png
                gene_name: TEKT1
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 86 percent done.
TESK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.584290e-02	ci left: 3.207846e-01	ci right 3.393145e-01	k: 3300	n:10000
Cons ci ratio: 4.078604e-02	ci left: 4.702649e-01	ci right 4.899467e-01	k: 4801	n:10000
KS ci ratio: 7.080402e-02	ci left: 2.262242e-01	ci right 2.429307e-01	k: 2345	n:10000
TESK2   10000 perm   2 sec   (5798 perm/sec)   p_kst 2.345000e-01   p_cons 4.801000e-01   p_joint 3.300000e-01

Outputting figure to mutsig2_images.part000000000173/TESK2.2_1756_10000_0.2345_0.4801_0.33.png
                gene_name: TESK2
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 88 percent done.
TEX101
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.958260e-02	ci left: 6.275869e-01	ci right 6.465332e-01	k: 6371	n:10000
Cons ci ratio: 4.363748e-02	ci left: 4.367232e-01	ci right 4.563080e-01	k: 4465	n:10000
KS ci ratio: 5.188359e-02	ci left: 3.538645e-01	ci right 3.728152e-01	k: 3633	n:10000
TEX101   10000 perm   1 sec   (6902 perm/sec)   p_kst 3.633000e-01   p_cons 4.465000e-01   p_joint 6.371000e-01

Outputting figure to mutsig2_images.part000000000173/TEX101.2_828_10000_0.3633_0.4465_0.6371.png
                gene_name: TEX101
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 89 percent done.
TEX13B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.150284e-02	ci left: 7.603080e-01	ci right 7.769353e-01	k: 7687	n:10000
KS ci ratio: 4.037980e-02	ci left: 4.752601e-01	ci right 4.949486e-01	k: 4851	n:10000
TEX13B   10000 perm   1 sec   (6776 perm/sec)   p_kst 4.851000e-01   p_cons 7.687000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000173/TEX13B.2_947_10000_0.4851_0.7687_1.png
                gene_name: TEX13B
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
TEX9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.683568e-02	ci left: 8.370436e-01	ci right 8.513552e-01	k: 8443	n:10000
Cons ci ratio: 1.154861e-02	ci left: 9.147155e-01	ci right 9.254382e-01	k: 9202	n:10000
KS ci ratio: 1.912852e-01	ci left: 3.643453e-02	ci right 4.423614e-02	k: 402	n:10000
TEX9   10000 perm   2 sec   (6227 perm/sec)   p_kst 4.020000e-02   p_cons 9.202000e-01   p_joint 8.443000e-01

Joint ci ratio: 4.107497e-02	ci left: 3.064268e-01	ci right 3.193277e-01	k: 6257	n:20000
Cons ci ratio: 8.702650e-03	ci left: 9.062549e-01	ci right 9.142254e-01	k: 18206	n:20000
KS ci ratio: 1.359668e-01	ci left: 3.718116e-02	ci right 4.265364e-02	k: 797	n:20000
TEX9   20000 perm   4 sec   (5655 perm/sec)   p_kst 3.985000e-02   p_cons 9.103000e-01   p_joint 3.128500e-01

Joint ci ratio: 3.060887e-02	ci left: 3.480217e-01	ci right 3.588734e-01	k: 10603	n:30000
Cons ci ratio: 7.135671e-03	ci left: 9.062987e-01	ci right 9.128218e-01	k: 27288	n:30000
KS ci ratio: 1.111625e-01	ci left: 3.758343e-02	ci right 4.203959e-02	k: 1193	n:30000
TEX9   30000 perm   6 sec   (5421 perm/sec)   p_kst 3.976667e-02   p_cons 9.096000e-01   p_joint 3.534333e-01

Joint ci ratio: 2.653514e-02	ci left: 3.482900e-01	ci right 3.576813e-01	k: 14119	n:40000
Cons ci ratio: 5.808746e-03	ci left: 9.165624e-01	ci right 9.219266e-01	k: 36771	n:40000
KS ci ratio: 9.620696e-02	ci left: 3.792964e-02	ci right 4.178753e-02	k: 1593	n:40000
TEX9   40000 perm   8 sec   (5270 perm/sec)   p_kst 3.982500e-02   p_cons 9.192750e-01   p_joint 3.529750e-01

Outputting figure to mutsig2_images.part000000000173/TEX9.2_1224_40000_0.039825_0.91927_0.35297.png
                gene_name: TEX9
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.040 
        ci_ks_bounds_left: 0.038 
       ci_ks_bounds_right: 0.042 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 93 percent done.
TFB2M
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.319059e-03	ci left: 9.857766e-01	ci right 9.901322e-01	k: 9881	n:10000
Cons ci ratio: 8.914833e-03	ci left: 9.464818e-01	ci right 9.550532e-01	k: 9509	n:10000
KS ci ratio: 3.178368e-02	ci left: 5.936327e-01	ci right 6.129071e-01	k: 6033	n:10000
TFB2M   10000 perm   2 sec   (6551 perm/sec)   p_kst 6.033000e-01   p_cons 9.509000e-01   p_joint 9.881000e-01

Outputting figure to mutsig2_images.part000000000173/TFB2M.2_1223_10000_0.6033_0.9509_0.9881.png
                gene_name: TFB2M
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 95 percent done.
TFCP2L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.894111e-02	ci left: 1.899330e-01	ci right 2.056434e-01	k: 1977	n:10000
KS ci ratio: 5.584290e-03	ci left: 9.772755e-01	ci right 9.828399e-01	k: 9802	n:10000
TFCP2L1   10000 perm   1 sec   (6780 perm/sec)   p_kst 9.802000e-01   p_cons 1.977000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000173/TFCP2L1.2_1500_10000_0.9802_0.1977_1.png
                gene_name: TFCP2L1
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
TFE3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.945788e-03	ci left: 9.745067e-01	ci right 9.804106e-01	k: 9776	n:10000
Cons ci ratio: 4.814106e-02	ci left: 3.889845e-01	ci right 4.082746e-01	k: 3986	n:10000
KS ci ratio: 3.397380e-02	ci left: 5.612300e-01	ci right 5.807287e-01	k: 5710	n:10000
TFE3   10000 perm   2 sec   (6422 perm/sec)   p_kst 5.710000e-01   p_cons 3.986000e-01   p_joint 9.776000e-01

Outputting figure to mutsig2_images.part000000000173/TFE3.2_1768_10000_0.571_0.3986_0.9776.png
                gene_name: TFE3
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 98 percent done.
TFEB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.601820e-01	ci left: 5.195823e-02	ci right 6.110226e-02	k: 564	n:10000
Cons ci ratio: 1.645486e-01	ci left: 4.926618e-02	ci right 5.819605e-02	k: 536	n:10000
KS ci ratio: 3.452473e-02	ci left: 5.533113e-01	ci right 5.728519e-01	k: 5631	n:10000
TFEB   10000 perm   1 sec   (6800 perm/sec)   p_kst 5.631000e-01   p_cons 5.360000e-02   p_joint 5.640000e-02

Joint ci ratio: 1.237799e-01	ci left: 4.478715e-02	ci right 5.074522e-02	k: 954	n:20000
Cons ci ratio: 1.149490e-01	ci left: 5.178301e-02	ci right 5.814716e-02	k: 1098	n:20000
KS ci ratio: 2.432996e-02	ci left: 5.578949e-01	ci right 5.716862e-01	k: 11296	n:20000
TFEB   20000 perm   3 sec   (5917 perm/sec)   p_kst 5.648000e-01   p_cons 5.490000e-02   p_joint 4.770000e-02

Joint ci ratio: 1.111625e-01	ci left: 3.758343e-02	ci right 4.203959e-02	k: 1193	n:30000
Cons ci ratio: 9.330341e-02	ci left: 5.296827e-02	ci right 5.818489e-02	k: 1666	n:30000
KS ci ratio: 1.979713e-02	ci left: 5.608695e-01	ci right 5.721177e-01	k: 16995	n:30000
TFEB   30000 perm   5 sec   (5588 perm/sec)   p_kst 5.665000e-01   p_cons 5.553333e-02   p_joint 3.976667e-02

Joint ci ratio: 9.703414e-02	ci left: 3.729474e-02	ci right 4.112252e-02	k: 1567	n:40000
Cons ci ratio: 8.151781e-02	ci left: 5.241792e-02	ci right 5.689701e-02	k: 2185	n:40000
KS ci ratio: 1.718430e-02	ci left: 5.605001e-01	ci right 5.702405e-01	k: 22615	n:40000
TFEB   40000 perm   7 sec   (5400 perm/sec)   p_kst 5.653750e-01   p_cons 5.462500e-02   p_joint 3.917500e-02

Outputting figure to mutsig2_images.part000000000173/TFEB.2_1463_40000_0.56537_0.054625_0.039175.png
                gene_name: TFEB
               theta_stop: 0.097 
                    nperm: 40000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.055 
      ci_cons_bounds_left: 0.052 
     ci_cons_bounds_right: 0.057 
                  p_joint: 0.039 
     ci_joint_bounds_left: 0.037 
    ci_joint_bounds_right: 0.041 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000173
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 173 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1729>
Subject: Job 8004616: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1729>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000174> was used as the working directory.
Started at Sun Nov 11 15:21:43 2012
Results reported at Sun Nov 11 15:29:25 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000174.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000174.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 174  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000174.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    465.53 sec.
    Max Memory :      4746 MB
    Max Swap   :      7085 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
174
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 174
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 174: processing genes 15652 - 15742
Calculating significance of each gene.
Using projection method.
15652	TFF2	1
15653	TFF3	1
15654	TFG	1
15655	TFIP11	7.206068e-01
15656	TFPI	1
15657	TFPI2	2.124667e-01
15658	TFPT	6.863731e-01
15659	TFR2	8.522282e-01
15660	TFRC	8.294526e-01
15661	TG	9.500562e-01
15662	TGDS	6.451798e-01
15663	TGFA	3.935162e-01
15664	TGFB1	4.823750e-01
15665	TGFB1I1	6.679746e-01
15666	TGFB2	1
15667	TGFB3	1
15668	TGFBI	1.872904e-01
15669	TGFBR1	1
15670	TGFBR2	5.415522e-01
15671	TGFBR3	8.064370e-02
15672	TGFBRAP1	2.731829e-01
15673	TGIF1	5.900208e-01
15674	TGIF2	6.379001e-01
15675	TGIF2LX	7.013453e-06
15676	TGIF2LY	1
15677	TGM1	1
15678	TGM2	9.318756e-01
15679	TGM3	2.549036e-01
15680	TGM4	3.007760e-01
15681	TGM5	2.086503e-01
15682	TGM6	7.675269e-01
15683	TGM7	5.973080e-01
15684	TGOLN2	4.979709e-01
15685	TGS1	1
15686	TH	8.280444e-01
15687	TH1L	1
15688	THADA	2.673447e-01
15689	THAP1	5.963173e-01
15690	THAP10	1.711430e-01
15691	THAP11	5.551696e-01
15692	THAP2	6.159115e-01
15693	THAP3	2.625869e-01
15694	THAP4	1
15695	THAP5	1
15696	THAP6	2.996397e-01
15697	THAP7	1
15698	THAP8	1
15699	THAP9	8.157762e-01
15700	THBD	1
15701	THBS1	9.970717e-01
15702	THBS2	9.112783e-01
15703	THBS3	1
15704	THBS4	9.820316e-01
15705	THEG	3.776397e-01
15706	THEM4	4.908592e-01
15707	THEM5	1
15708	THEMIS	6.268334e-03
15709	THG1L	1
15710	THNSL1	8.238526e-01
15711	THNSL2	7.936358e-01
15712	THOC1	8.206031e-01
15713	THOC2	1
15714	THOC3	1
15715	THOC4	2.583048e-01
15716	THOC5	4.573412e-01
15717	THOC6	1
15718	THOC7	1
15719	THOP1	1
15720	THPO	1
15721	THRA	8.677933e-01
15722	THRAP3	7.795987e-01
15723	THRB	6.521629e-01
15724	THRSP	2.532481e-01
15725	THSD1	1
15726	THSD4	9.433074e-01
15727	THSD7A	7.139219e-02
15728	THSD7B	1.873726e-01
15729	THTPA	1
15730	THUMPD1	3.057303e-01
15731	THUMPD2	3.476162e-01
15732	THUMPD3	2.784667e-01
15733	THY1	1.781610e-01
15734	THYN1	1
15735	TIA1	3.658029e-02
15736	TIAF1	1
15737	TIAL1	1
15738	TIAM1	7.694685e-01
15739	TIAM2	9.825187e-01
15740	TICAM1	1
15741	TIE1	9.335881e-01
15742	TIFA	1
Done

Running MutSig 2:
Scatter job 174: processing genes 15652 - 15742
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
THSD7B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.803680e-02	ci left: 8.177134e-01	ci right 8.326966e-01	k: 8253	n:10000
Cons ci ratio: 2.887637e-02	ci left: 6.387484e-01	ci right 6.575652e-01	k: 6482	n:10000
KS ci ratio: 2.643927e-02	ci left: 6.781102e-01	ci right 6.963806e-01	k: 6873	n:10000
THSD7B   10000 perm   2 sec   (4181 perm/sec)   p_kst 6.873000e-01   p_cons 6.482000e-01   p_joint 8.253000e-01

Outputting figure to mutsig2_images.part000000000174/THSD7B.24_4841_10000_0.6873_0.6482_0.8253.png
                gene_name: THSD7B
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 2 percent done.
THSD7A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.781489e-02	ci left: 1.944641e-01	ci right 2.103097e-01	k: 2023	n:10000
Cons ci ratio: 4.058238e-02	ci left: 4.727624e-01	ci right 4.924478e-01	k: 4826	n:10000
KS ci ratio: 1.309804e-01	ci left: 7.679184e-02	ci right 8.765300e-02	k: 821	n:10000
THSD7A   10000 perm   2 sec   (4641 perm/sec)   p_kst 8.210000e-02   p_cons 4.826000e-01   p_joint 2.023000e-01

Joint ci ratio: 6.891355e-02	ci left: 1.344303e-01	ci right 1.440748e-01	k: 2784	n:20000
Cons ci ratio: 2.839833e-02	ci left: 4.808997e-01	ci right 4.948038e-01	k: 9757	n:20000
KS ci ratio: 9.135347e-02	ci left: 8.043612e-02	ci right 8.818524e-02	k: 1685	n:20000
THSD7A   20000 perm   5 sec   (4247 perm/sec)   p_kst 8.425000e-02   p_cons 4.878500e-01   p_joint 1.392000e-01

Outputting figure to mutsig2_images.part000000000174/THSD7A.18_5082_20000_0.08425_0.48785_0.1392.png
                gene_name: THSD7A
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.084 
        ci_ks_bounds_left: 0.080 
       ci_ks_bounds_right: 0.088 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 4 percent done.
THBS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.348737e-02	ci left: 8.880063e-01	ci right 9.001631e-01	k: 8942	n:10000
KS ci ratio: 9.979928e-03	ci left: 9.343371e-01	ci right 9.438051e-01	k: 9392	n:10000
THBS2   10000 perm   2 sec   (4769 perm/sec)   p_kst 9.392000e-01   p_cons 8.942000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000174/THBS2.16_3603_10000_0.9392_0.8942_1.png
                gene_name: THBS2
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 7 percent done.
TG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.025994e-02	ci left: 7.810721e-01	ci right 7.971591e-01	k: 7892	n:10000
Cons ci ratio: 2.731015e-02	ci left: 6.639075e-01	ci right 6.823916e-01	k: 6732	n:10000
KS ci ratio: 3.571168e-02	ci left: 5.365801e-01	ci right 5.561928e-01	k: 5464	n:10000
TG   10000 perm   2 sec   (4169 perm/sec)   p_kst 5.464000e-01   p_cons 6.732000e-01   p_joint 7.892000e-01

Outputting figure to mutsig2_images.part000000000174/TG.15_8499_10000_0.5464_0.6732_0.7892.png
                gene_name: TG
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 9 percent done.
THADA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.140181e-01	ci left: 9.964203e-02	ci right 1.117887e-01	k: 1056	n:10000
Cons ci ratio: 2.606481e-02	ci left: 6.842576e-01	ci right 7.024297e-01	k: 6934	n:10000
KS ci ratio: 2.252227e-01	ci left: 2.608227e-02	ci right 3.279558e-02	k: 293	n:10000
THADA   10000 perm   2 sec   (4396 perm/sec)   p_kst 2.930000e-02   p_cons 6.934000e-01   p_joint 1.056000e-01

Joint ci ratio: 8.577564e-02	ci left: 9.048006e-02	ci right 9.863825e-02	k: 1890	n:20000
Cons ci ratio: 1.844199e-02	ci left: 6.867057e-01	ci right 6.995382e-01	k: 13863	n:20000
KS ci ratio: 1.651402e-01	ci left: 2.513349e-02	ci right 2.970529e-02	k: 547	n:20000
THADA   20000 perm   5 sec   (4057 perm/sec)   p_kst 2.735000e-02   p_cons 6.931500e-01   p_joint 9.450000e-02

Joint ci ratio: 9.191050e-02	ci left: 5.453327e-02	ci right 5.981956e-02	k: 1714	n:30000
Cons ci ratio: 1.505148e-02	ci left: 6.880803e-01	ci right 6.985489e-01	k: 20800	n:30000
KS ci ratio: 1.370829e-01	ci left: 2.471178e-02	ci right 2.838068e-02	k: 795	n:30000
THADA   30000 perm   8 sec   (3907 perm/sec)   p_kst 2.650000e-02   p_cons 6.933333e-01   p_joint 5.713333e-02

Joint ci ratio: 8.217600e-02	ci left: 5.160889e-02	ci right 5.605616e-02	k: 2152	n:40000
Cons ci ratio: 1.311810e-02	ci left: 6.860690e-01	ci right 6.951534e-01	k: 27625	n:40000
KS ci ratio: 1.200806e-01	ci left: 2.438968e-02	ci right 2.752965e-02	k: 1037	n:40000
THADA   40000 perm   10 sec   (3830 perm/sec)   p_kst 2.592500e-02   p_cons 6.906250e-01   p_joint 5.380000e-02

Joint ci ratio: 6.951152e-02	ci left: 5.771755e-02	ci right 6.189374e-02	k: 2989	n:50000
Cons ci ratio: 1.171250e-02	ci left: 6.873101e-01	ci right 6.954277e-01	k: 34569	n:50000
KS ci ratio: 1.099759e-01	ci left: 2.341559e-02	ci right 2.615996e-02	k: 1238	n:50000
THADA   50000 perm   13 sec   (3772 perm/sec)   p_kst 2.476000e-02   p_cons 6.913800e-01   p_joint 5.978000e-02

Joint ci ratio: 6.787201e-02	ci left: 5.087633e-02	ci right 5.446710e-02	k: 3159	n:60000
Cons ci ratio: 1.066397e-02	ci left: 6.887901e-01	ci right 6.961913e-01	k: 41550	n:60000
KS ci ratio: 1.005606e-01	ci left: 2.345653e-02	ci right 2.595640e-02	k: 1481	n:60000
THADA   60000 perm   16 sec   (3692 perm/sec)   p_kst 2.468333e-02   p_cons 6.925000e-01   p_joint 5.265000e-02

Joint ci ratio: 5.837084e-02	ci left: 5.875905e-02	ci right 6.230606e-02	k: 4236	n:70000
Cons ci ratio: 1.003053e-02	ci left: 6.822605e-01	ci right 6.891527e-01	k: 48000	n:70000
KS ci ratio: 9.323941e-02	ci left: 2.347904e-02	ci right 2.578916e-02	k: 1723	n:70000
THADA   70000 perm   19 sec   (3625 perm/sec)   p_kst 2.461429e-02   p_cons 6.857143e-01   p_joint 6.051429e-02

Outputting figure to mutsig2_images.part000000000174/THADA.11_6010_70000_0.024614_0.68571_0.060514.png
                gene_name: THADA
               theta_stop: 0.093 
                    nperm: 70000 
                     p_ks: 0.025 
        ci_ks_bounds_left: 0.023 
       ci_ks_bounds_right: 0.026 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.061 
     ci_joint_bounds_left: 0.059 
    ci_joint_bounds_right: 0.062 

Current progress: 11 percent done.
TIAM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.724980e-02	ci left: 8.304267e-01	ci right 8.449760e-01	k: 8378	n:10000
Cons ci ratio: 4.486767e-02	ci left: 4.230598e-01	ci right 4.425793e-01	k: 4328	n:10000
KS ci ratio: 1.190619e-02	ci left: 9.099797e-01	ci right 9.209768e-01	k: 9156	n:10000
TIAM1   10000 perm   2 sec   (4910 perm/sec)   p_kst 9.156000e-01   p_cons 4.328000e-01   p_joint 8.378000e-01

Outputting figure to mutsig2_images.part000000000174/TIAM1.11_4876_10000_0.9156_0.4328_0.8378.png
                gene_name: TIAM1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 13 percent done.
TGIF2LX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.989677e-02	ci left: 6.226615e-01	ci right 6.416614e-01	k: 6322	n:10000
Cons ci ratio: 4.049311e-02	ci left: 4.738613e-01	ci right 4.935482e-01	k: 4837	n:10000
KS ci ratio: 4.006591e-02	ci left: 4.791570e-01	ci right 4.988495e-01	k: 4890	n:10000
TGIF2LX   10000 perm   2 sec   (5978 perm/sec)   p_kst 4.890000e-01   p_cons 4.837000e-01   p_joint 6.322000e-01

Outputting figure to mutsig2_images.part000000000174/TGIF2LX.10_730_10000_0.489_0.4837_0.6322.png
                gene_name: TGIF2LX
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 16 percent done.
THEMIS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.330145e-02	ci left: 8.906714e-01	ci right 9.026964e-01	k: 8968	n:10000
Cons ci ratio: 3.202987e-02	ci left: 5.899187e-01	ci right 6.092232e-01	k: 5996	n:10000
KS ci ratio: 2.406905e-02	ci left: 7.173453e-01	ci right 7.349227e-01	k: 7262	n:10000
THEMIS   10000 perm   2 sec   (6035 perm/sec)   p_kst 7.262000e-01   p_cons 5.996000e-01   p_joint 8.968000e-01

Outputting figure to mutsig2_images.part000000000174/THEMIS.10_2071_10000_0.7262_0.5996_0.8968.png
                gene_name: THEMIS
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 18 percent done.
THOC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.773271e-02	ci left: 2.423276e-01	ci right 2.594177e-01	k: 2508	n:10000
Cons ci ratio: 1.085277e-01	ci left: 1.091029e-01	ci right 1.217221e-01	k: 1153	n:10000
KS ci ratio: 1.865892e-02	ci left: 8.075529e-01	ci right 8.228631e-01	k: 8153	n:10000
THOC2   10000 perm   2 sec   (5186 perm/sec)   p_kst 8.153000e-01   p_cons 1.153000e-01   p_joint 2.508000e-01

Joint ci ratio: 3.972019e-02	ci left: 3.209467e-01	ci right 3.340035e-01	k: 6549	n:20000
Cons ci ratio: 7.659211e-02	ci left: 1.113472e-01	ci right 1.202648e-01	k: 2315	n:20000
KS ci ratio: 1.323067e-02	ci left: 8.089918e-01	ci right 8.198166e-01	k: 16289	n:20000
THOC2   20000 perm   4 sec   (4720 perm/sec)   p_kst 8.144500e-01   p_cons 1.157500e-01   p_joint 3.274500e-01

Outputting figure to mutsig2_images.part000000000174/THOC2.9_4934_20000_0.81445_0.11575_0.32745.png
                gene_name: THOC2
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 20 percent done.
TGFBR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.520321e-02	ci left: 5.436920e-01	ci right 5.632768e-01	k: 5535	n:10000
Cons ci ratio: 2.290929e-02	ci left: 7.367410e-01	ci right 7.539159e-01	k: 7454	n:10000
KS ci ratio: 5.594406e-02	ci left: 3.199905e-01	ci right 3.385090e-01	k: 3292	n:10000
TGFBR3   10000 perm   2 sec   (5672 perm/sec)   p_kst 3.292000e-01   p_cons 7.454000e-01   p_joint 5.535000e-01

Outputting figure to mutsig2_images.part000000000174/TGFBR3.8_2620_10000_0.3292_0.7454_0.5535.png
                gene_name: TGFBR3
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 22 percent done.
TGM6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.490867e-03	ci left: 9.400391e-01	ci right 9.490997e-01	k: 9447	n:10000
KS ci ratio: 1.737651e-02	ci left: 8.283916e-01	ci right 8.430123e-01	k: 8358	n:10000
TGM6   10000 perm   2 sec   (5613 perm/sec)   p_kst 8.358000e-01   p_cons 9.447000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000174/TGM6.7_2173_10000_0.8358_0.9447_1.png
                gene_name: TGM6
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 24 percent done.
TIE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.083034e-01	ci left: 3.062918e-02	ci right 3.784546e-02	k: 341	n:10000
Cons ci ratio: 1.433436e-02	ci left: 8.756178e-01	ci right 8.883587e-01	k: 8821	n:10000
KS ci ratio: 4.392673e-01	ci left: 6.170319e-03	ci right 9.725324e-03	k: 78	n:10000
TIE1   10000 perm   2 sec   (5372 perm/sec)   p_kst 7.800000e-03   p_cons 8.821000e-01   p_joint 3.410000e-02

Joint ci ratio: 2.184120e-01	ci left: 1.411743e-02	ci right 1.762537e-02	k: 316	n:20000
Cons ci ratio: 1.023442e-02	ci left: 8.754668e-01	ci right 8.845224e-01	k: 17601	n:20000
KS ci ratio: 3.116120e-01	ci left: 6.627764e-03	ci right 9.118513e-03	k: 156	n:20000
TIE1   20000 perm   4 sec   (4861 perm/sec)   p_kst 7.800000e-03   p_cons 8.800500e-01   p_joint 1.580000e-02

Joint ci ratio: 1.473941e-01	ci left: 2.133336e-02	ci right 2.475987e-02	k: 690	n:30000
Cons ci ratio: 8.672884e-03	ci left: 8.681330e-01	ci right 8.757281e-01	k: 26159	n:30000
KS ci ratio: 2.520166e-01	ci left: 6.991898e-03	ci right 9.038438e-03	k: 239	n:30000
TIE1   30000 perm   6 sec   (4672 perm/sec)   p_kst 7.966667e-03   p_cons 8.719667e-01   p_joint 2.300000e-02

Joint ci ratio: 1.398990e-01	ci left: 1.790183e-02	ci right 2.061860e-02	k: 769	n:40000
Cons ci ratio: 7.520630e-03	ci left: 8.683579e-01	ci right 8.749380e-01	k: 34867	n:40000
KS ci ratio: 2.196418e-01	ci left: 7.032159e-03	ci right 8.790409e-03	k: 315	n:40000
TIE1   40000 perm   9 sec   (4551 perm/sec)   p_kst 7.875000e-03   p_cons 8.716750e-01   p_joint 1.922500e-02

Joint ci ratio: 1.084158e-01	ci left: 2.409693e-02	ci right 2.687854e-02	k: 1273	n:50000
Cons ci ratio: 6.689717e-03	ci left: 8.699488e-01	ci right 8.758079e-01	k: 43645	n:50000
KS ci ratio: 1.939940e-01	ci left: 7.313959e-03	ci right 8.903947e-03	k: 404	n:50000
TIE1   50000 perm   11 sec   (4457 perm/sec)   p_kst 8.080000e-03   p_cons 8.729000e-01   p_joint 2.546000e-02

Joint ci ratio: 9.139141e-02	ci left: 2.838872e-02	ci right 3.112368e-02	k: 1784	n:60000
Cons ci ratio: 6.110021e-03	ci left: 8.700907e-01	ci right 8.754398e-01	k: 52367	n:60000
KS ci ratio: 1.745743e-01	ci left: 7.605530e-03	ci right 9.075955e-03	k: 499	n:60000
TIE1   60000 perm   14 sec   (4368 perm/sec)   p_kst 8.316667e-03   p_cons 8.727833e-01   p_joint 2.973333e-02

Joint ci ratio: 9.451176e-02	ci left: 2.285093e-02	ci right 2.513162e-02	k: 1678	n:70000
Cons ci ratio: 5.641401e-03	ci left: 8.708996e-01	ci right 8.758408e-01	k: 61137	n:70000
KS ci ratio: 1.677241e-01	ci left: 7.093169e-03	ci right 8.405272e-03	k: 541	n:70000
TIE1   70000 perm   16 sec   (4292 perm/sec)   p_kst 7.728571e-03   p_cons 8.733857e-01   p_joint 2.397143e-02

Joint ci ratio: 8.226336e-02	ci left: 2.646344e-02	ci right 2.874600e-02	k: 2207	n:80000
Cons ci ratio: 5.268335e-03	ci left: 8.714287e-01	ci right 8.760442e-01	k: 69900	n:80000
KS ci ratio: 1.548181e-01	ci left: 7.334233e-03	ci right 8.576849e-03	k: 635	n:80000
TIE1   80000 perm   19 sec   (4222 perm/sec)   p_kst 7.937500e-03   p_cons 8.737500e-01   p_joint 2.758750e-02

Joint ci ratio: 8.081233e-02	ci left: 2.444720e-02	ci right 2.651687e-02	k: 2292	n:90000
Cons ci ratio: 4.742940e-03	ci left: 8.814756e-01	ci right 8.856774e-01	k: 79523	n:90000
KS ci ratio: 1.448961e-01	ci left: 7.481892e-03	ci right 8.661257e-03	k: 725	n:90000
TIE1   90000 perm   22 sec   (4154 perm/sec)   p_kst 8.055556e-03   p_cons 8.835889e-01   p_joint 2.546667e-02

Joint ci ratio: 7.272945e-02	ci left: 2.720232e-02	ci right 2.926517e-02	k: 2822	n:100000
Cons ci ratio: 4.518082e-03	ci left: 8.807298e-01	ci right 8.847279e-01	k: 88274	n:100000
KS ci ratio: 1.359121e-01	ci left: 7.689007e-03	ci right 8.819794e-03	k: 824	n:100000
TIE1   100000 perm   24 sec   (4088 perm/sec)   p_kst 8.240000e-03   p_cons 8.827400e-01   p_joint 2.822000e-02

Joint ci ratio: 6.751322e-02	ci left: 2.873150e-02	ci right 3.074794e-02	k: 3270	n:110000
Cons ci ratio: 4.309214e-03	ci left: 8.807563e-01	ci right 8.845689e-01	k: 97094	n:110000
KS ci ratio: 1.258314e-01	ci left: 8.194866e-03	ci right 9.303996e-03	k: 961	n:110000
TIE1   110000 perm   27 sec   (4023 perm/sec)   p_kst 8.736364e-03   p_cons 8.826727e-01   p_joint 2.972727e-02

Joint ci ratio: 6.604836e-02	ci left: 2.757398e-02	ci right 2.946556e-02	k: 3421	n:120000
Cons ci ratio: 4.134332e-03	ci left: 8.804046e-01	ci right 8.840603e-01	k: 105869	n:120000
KS ci ratio: 1.206169e-01	ci left: 8.198465e-03	ci right 9.258815e-03	k: 1046	n:120000
TIE1   120000 perm   30 sec   (3956 perm/sec)   p_kst 8.716667e-03   p_cons 8.822417e-01   p_joint 2.850833e-02

Joint ci ratio: 6.642254e-02	ci left: 2.522493e-02	ci right 2.696553e-02	k: 3391	n:130000
Cons ci ratio: 3.971900e-03	ci left: 8.804894e-01	ci right 8.840012e-01	k: 114693	n:130000
KS ci ratio: 1.153349e-01	ci left: 8.299444e-03	ci right 9.322647e-03	k: 1144	n:130000
TIE1   130000 perm   33 sec   (3897 perm/sec)   p_kst 8.800000e-03   p_cons 8.822538e-01   p_joint 2.608462e-02

Joint ci ratio: 6.702467e-02	ci left: 2.305002e-02	ci right 2.465550e-02	k: 3338	n:140000
Cons ci ratio: 3.823931e-03	ci left: 8.807442e-01	ci right 8.841256e-01	k: 123542	n:140000
KS ci ratio: 1.108712e-01	ci left: 8.359078e-03	ci right 9.347140e-03	k: 1238	n:140000
TIE1   140000 perm   36 sec   (3844 perm/sec)   p_kst 8.842857e-03   p_cons 8.824429e-01   p_joint 2.384286e-02

Joint ci ratio: 6.576178e-02	ci left: 2.237848e-02	ci right 2.390669e-02	k: 3470	n:150000
Cons ci ratio: 3.699655e-03	ci left: 8.804975e-01	ci right 8.837677e-01	k: 132321	n:150000
KS ci ratio: 1.068481e-01	ci left: 8.417911e-03	ci right 9.374551e-03	k: 1333	n:150000
TIE1   150000 perm   40 sec   (3789 perm/sec)   p_kst 8.886667e-03   p_cons 8.821400e-01   p_joint 2.313333e-02

Joint ci ratio: 5.888613e-02	ci left: 2.615582e-02	ci right 2.774889e-02	k: 4311	n:160000
Cons ci ratio: 3.580277e-03	ci left: 8.806606e-01	ci right 8.838255e-01	k: 141160	n:160000
KS ci ratio: 1.034162e-01	ci left: 8.439506e-03	ci right 9.365921e-03	k: 1423	n:160000
TIE1   160000 perm   43 sec   (3737 perm/sec)   p_kst 8.893750e-03   p_cons 8.822500e-01   p_joint 2.694375e-02

Joint ci ratio: 6.125479e-02	ci left: 2.280247e-02	ci right 2.424913e-02	k: 3998	n:170000
Cons ci ratio: 3.473032e-03	ci left: 8.807291e-01	ci right 8.837990e-01	k: 149986	n:170000
KS ci ratio: 1.006984e-01	ci left: 8.390166e-03	ci right 9.285528e-03	k: 1501	n:170000
TIE1   170000 perm   46 sec   (3687 perm/sec)   p_kst 8.829412e-03   p_cons 8.822706e-01   p_joint 2.351765e-02

Joint ci ratio: 6.027096e-02	ci left: 2.226862e-02	ci right 2.365792e-02	k: 4132	n:180000
Cons ci ratio: 3.374519e-03	ci left: 8.808135e-01	ci right 8.837964e-01	k: 158816	n:180000
KS ci ratio: 9.802790e-02	ci left: 8.373694e-03	ci right 9.242237e-03	k: 1584	n:180000
TIE1   180000 perm   49 sec   (3638 perm/sec)   p_kst 8.800000e-03   p_cons 8.823111e-01   p_joint 2.295556e-02

Outputting figure to mutsig2_images.part000000000174/TIE1.7_3509_180000_0.0088_0.88231_0.022956.png
                gene_name: TIE1
               theta_stop: 0.098 
                    nperm: 180000 
                     p_ks: 0.0088 
        ci_ks_bounds_left: 0.0084 
       ci_ks_bounds_right: 0.0092 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.023 
     ci_joint_bounds_left: 0.022 
    ci_joint_bounds_right: 0.024 

Current progress: 27 percent done.
TGFBRAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.032384e-01	ci left: 1.194577e-01	ci right 1.325610e-01	k: 1259	n:10000
Cons ci ratio: 1.385609e-01	ci left: 6.894400e-02	ci right 7.930573e-02	k: 740	n:10000
KS ci ratio: 5.709069e-02	ci left: 3.111584e-01	ci right 3.295464e-01	k: 3203	n:10000
TGFBRAP1   10000 perm   2 sec   (5726 perm/sec)   p_kst 3.203000e-01   p_cons 7.400000e-02   p_joint 1.259000e-01

Joint ci ratio: 5.163549e-02	ci left: 2.178906e-01	ci right 2.294899e-01	k: 4473	n:20000
Cons ci ratio: 9.171034e-02	ci left: 7.984868e-02	ci right 8.757286e-02	k: 1673	n:20000
KS ci ratio: 3.968415e-02	ci left: 3.213446e-01	ci right 3.344055e-01	k: 6557	n:20000
TGFBRAP1   20000 perm   4 sec   (5209 perm/sec)   p_kst 3.278500e-01   p_cons 8.365000e-02   p_joint 2.236500e-01

Outputting figure to mutsig2_images.part000000000174/TGFBRAP1.5_2627_20000_0.32785_0.08365_0.22365.png
                gene_name: TGFBRAP1
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.084 
      ci_cons_bounds_left: 0.080 
     ci_cons_bounds_right: 0.088 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 29 percent done.
TGM5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.115553e-01	ci left: 1.037366e-01	ci right 1.160916e-01	k: 1098	n:10000
Cons ci ratio: 1.556154e-02	ci left: 8.570234e-01	ci right 8.705639e-01	k: 8639	n:10000
KS ci ratio: 1.898176e-01	ci left: 3.700694e-02	ci right 4.486335e-02	k: 408	n:10000
TGM5   10000 perm   2 sec   (6120 perm/sec)   p_kst 4.080000e-02   p_cons 8.639000e-01   p_joint 1.098000e-01

Joint ci ratio: 7.156303e-02	ci left: 1.257620e-01	ci right 1.351457e-01	k: 2608	n:20000
Cons ci ratio: 1.091141e-02	ci left: 8.610485e-01	ci right 8.705449e-01	k: 17317	n:20000
KS ci ratio: 1.345678e-01	ci left: 3.795510e-02	ci right 4.347944e-02	k: 813	n:20000
TGM5   20000 perm   4 sec   (5569 perm/sec)   p_kst 4.065000e-02   p_cons 8.658500e-01   p_joint 1.304000e-01

Joint ci ratio: 6.345000e-02	ci left: 1.092741e-01	ci right 1.164678e-01	k: 3385	n:30000
Cons ci ratio: 8.919745e-03	ci left: 8.616546e-01	ci right 8.694078e-01	k: 25967	n:30000
KS ci ratio: 1.084930e-01	ci left: 3.943328e-02	ci right 4.398935e-02	k: 1250	n:30000
TGM5   30000 perm   6 sec   (5318 perm/sec)   p_kst 4.166667e-02   p_cons 8.655667e-01   p_joint 1.128333e-01

Joint ci ratio: 5.776984e-02	ci left: 1.002351e-01	ci right 1.062227e-01	k: 4128	n:40000
Cons ci ratio: 7.728491e-03	ci left: 8.620669e-01	ci right 8.687800e-01	k: 34618	n:40000
KS ci ratio: 9.479130e-02	ci left: 3.905325e-02	ci right 4.296375e-02	k: 1639	n:40000
TGM5   40000 perm   8 sec   (5175 perm/sec)   p_kst 4.097500e-02   p_cons 8.654500e-01   p_joint 1.032000e-01

Outputting figure to mutsig2_images.part000000000174/TGM5.5_2215_40000_0.040975_0.86545_0.1032.png
                gene_name: TGM5
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.041 
        ci_ks_bounds_left: 0.039 
       ci_ks_bounds_right: 0.043 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 31 percent done.
TIAM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.402065e-02	ci left: 7.181531e-01	ci right 7.357145e-01	k: 7270	n:10000
Cons ci ratio: 6.154471e-02	ci left: 2.796327e-01	ci right 2.974906e-01	k: 2885	n:10000
KS ci ratio: 1.320071e-02	ci left: 8.921069e-01	ci right 9.040601e-01	k: 8982	n:10000
TIAM2   10000 perm   2 sec   (4973 perm/sec)   p_kst 8.982000e-01   p_cons 2.885000e-01   p_joint 7.270000e-01

Outputting figure to mutsig2_images.part000000000174/TIAM2.5_5202_10000_0.8982_0.2885_0.727.png
                gene_name: TIAM2
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 33 percent done.
TGFBI
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.227051e-01	ci left: 8.689066e-02	ci right 9.834794e-02	k: 925	n:10000
Cons ci ratio: 7.614384e-02	ci left: 2.014608e-01	ci right 2.175088e-01	k: 2094	n:10000
KS ci ratio: 1.303765e-01	ci left: 7.747081e-02	ci right 8.837361e-02	k: 828	n:10000
TGFBI   10000 perm   2 sec   (6176 perm/sec)   p_kst 8.280000e-02   p_cons 2.094000e-01   p_joint 9.250000e-02

Joint ci ratio: 8.605233e-02	ci left: 8.994073e-02	ci right 9.807774e-02	k: 1879	n:20000
Cons ci ratio: 5.364009e-02	ci left: 2.050656e-01	ci right 2.164187e-01	k: 4214	n:20000
KS ci ratio: 9.216170e-02	ci left: 7.911446e-02	ci right 8.680729e-02	k: 1658	n:20000
TGFBI   20000 perm   4 sec   (5388 perm/sec)   p_kst 8.290000e-02   p_cons 2.107000e-01   p_joint 9.395000e-02

Outputting figure to mutsig2_images.part000000000174/TGFBI.4_2120_20000_0.0829_0.2107_0.09395.png
                gene_name: TGFBI
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.083 
        ci_ks_bounds_left: 0.079 
       ci_ks_bounds_right: 0.087 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.094 
     ci_joint_bounds_left: 0.090 
    ci_joint_bounds_right: 0.098 

Current progress: 36 percent done.
TGM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.777680e-02	ci left: 6.563567e-01	ci right 6.749467e-01	k: 6657	n:10000
Cons ci ratio: 1.473093e-02	ci left: 8.696873e-01	ci right 8.826927e-01	k: 8763	n:10000
KS ci ratio: 5.430104e-02	ci left: 3.331960e-01	ci right 3.518958e-01	k: 3425	n:10000
TGM3   10000 perm   2 sec   (6317 perm/sec)   p_kst 3.425000e-01   p_cons 8.763000e-01   p_joint 6.657000e-01

Outputting figure to mutsig2_images.part000000000174/TGM3.4_2134_10000_0.3425_0.8763_0.6657.png
                gene_name: TGM3
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.67 

Current progress: 38 percent done.
TGM4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.742056e-02	ci left: 1.600322e-01	ci right 1.747621e-01	k: 1673	n:10000
Cons ci ratio: 7.158161e-02	ci left: 2.223737e-01	ci right 2.389835e-01	k: 2306	n:10000
KS ci ratio: 9.731480e-02	ci left: 1.327651e-01	ci right 1.464456e-01	k: 1395	n:10000
TGM4   10000 perm   2 sec   (6011 perm/sec)   p_kst 1.395000e-01   p_cons 2.306000e-01   p_joint 1.673000e-01

Outputting figure to mutsig2_images.part000000000174/TGM4.4_2111_10000_0.1395_0.2306_0.1673.png
                gene_name: TGM4
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 40 percent done.
TIA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.634093e-02	ci left: 6.797224e-01	ci right 6.979674e-01	k: 6889	n:10000
Cons ci ratio: 8.313059e-02	ci left: 1.742843e-01	ci right 1.895015e-01	k: 1818	n:10000
KS ci ratio: 2.107936e-02	ci left: 7.673949e-01	ci right 7.838442e-01	k: 7757	n:10000
TIA1   10000 perm   1 sec   (6668 perm/sec)   p_kst 7.757000e-01   p_cons 1.818000e-01   p_joint 6.889000e-01

Outputting figure to mutsig2_images.part000000000174/TIA1.4_1213_10000_0.7757_0.1818_0.6889.png
                gene_name: TIA1
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 42 percent done.
TFIP11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.287702e-02	ci left: 5.772755e-01	ci right 5.966738e-01	k: 5870	n:10000
Cons ci ratio: 6.435754e-02	ci left: 2.618113e-01	ci right 2.793225e-01	k: 2705	n:10000
KS ci ratio: 3.204988e-02	ci left: 5.896176e-01	ci right 6.089245e-01	k: 5993	n:10000
TFIP11   10000 perm   2 sec   (6459 perm/sec)   p_kst 5.993000e-01   p_cons 2.705000e-01   p_joint 5.870000e-01

Outputting figure to mutsig2_images.part000000000174/TFIP11.3_2562_10000_0.5993_0.2705_0.587.png
                gene_name: TFIP11
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 44 percent done.
TGFB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.919412e-02	ci left: 4.901514e-01	ci right 5.098486e-01	k: 5000	n:10000
KS ci ratio: 1.103812e-02	ci left: 9.213133e-01	ci right 9.316366e-01	k: 9266	n:10000
TGFB2   10000 perm   1 sec   (7080 perm/sec)   p_kst 9.266000e-01   p_cons 5.000000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000174/TGFB2.3_1361_10000_0.9266_0.5_1.png
                gene_name: TGFB2
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 47 percent done.
TGFBR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.602602e-01	ci left: 9.594514e-03	ci right 1.389697e-02	k: 116	n:10000
Cons ci ratio: 1.050099e-01	ci left: 1.158415e-01	ci right 1.287794e-01	k: 1222	n:10000
KS ci ratio: 4.962703e-01	ci left: 4.669135e-03	ci right 7.828899e-03	k: 61	n:10000
TGFBR2   10000 perm   1 sec   (6691 perm/sec)   p_kst 6.100000e-03   p_cons 1.222000e-01   p_joint 1.160000e-02

Joint ci ratio: 2.622204e-01	ci left: 9.600898e-03	ci right 1.254384e-02	k: 220	n:20000
Cons ci ratio: 7.404775e-02	ci left: 1.183306e-01	ci right 1.274793e-01	k: 2457	n:20000
KS ci ratio: 3.374918e-01	ci left: 5.570785e-03	ci right 7.876145e-03	k: 133	n:20000
TGFBR2   20000 perm   3 sec   (5945 perm/sec)   p_kst 6.650000e-03   p_cons 1.228500e-01   p_joint 1.100000e-02

Joint ci ratio: 2.059352e-01	ci left: 1.070373e-02	ci right 1.319213e-02	k: 357	n:30000
Cons ci ratio: 6.090349e-02	ci left: 1.176258e-01	ci right 1.250477e-01	k: 3639	n:30000
KS ci ratio: 2.708548e-01	ci left: 5.994619e-03	ci right 7.902745e-03	k: 207	n:30000
TGFBR2   30000 perm   5 sec   (5669 perm/sec)   p_kst 6.900000e-03   p_cons 1.213000e-01   p_joint 1.190000e-02

Joint ci ratio: 2.028439e-01	ci left: 8.311372e-03	ci right 1.021090e-02	k: 369	n:40000
Cons ci ratio: 5.409988e-02	ci left: 1.128773e-01	ci right 1.191786e-01	k: 4640	n:40000
KS ci ratio: 2.326054e-01	ci left: 6.229965e-03	ci right 7.892807e-03	k: 281	n:40000
TGFBR2   40000 perm   7 sec   (5474 perm/sec)   p_kst 7.025000e-03   p_cons 1.160000e-01   p_joint 9.225000e-03

Joint ci ratio: 2.076047e-01	ci left: 6.344851e-03	ci right 7.833240e-03	k: 353	n:50000
Cons ci ratio: 4.856504e-02	ci left: 1.124733e-01	ci right 1.180914e-01	k: 5763	n:50000
KS ci ratio: 2.103143e-01	ci left: 6.174213e-03	ci right 7.643912e-03	k: 344	n:50000
TGFBR2   50000 perm   9 sec   (5323 perm/sec)   p_kst 6.880000e-03   p_cons 1.152600e-01   p_joint 7.060000e-03

Joint ci ratio: 1.910629e-01	ci left: 6.300866e-03	ci right 7.647487e-03	k: 417	n:60000
Cons ci ratio: 4.439827e-02	ci left: 1.124247e-01	ci right 1.175460e-01	k: 6898	n:60000
KS ci ratio: 1.910629e-01	ci left: 6.300866e-03	ci right 7.647487e-03	k: 417	n:60000
TGFBR2   60000 perm   12 sec   (5202 perm/sec)   p_kst 6.950000e-03   p_cons 1.149667e-01   p_joint 6.950000e-03

Joint ci ratio: 1.844007e-01	ci left: 5.822654e-03	ci right 7.018814e-03	k: 448	n:70000
Cons ci ratio: 4.119115e-02	ci left: 1.121925e-01	ci right 1.169252e-01	k: 8018	n:70000
KS ci ratio: 1.792494e-01	ci left: 6.177278e-03	ci right 7.406998e-03	k: 474	n:70000
TGFBR2   70000 perm   14 sec   (5059 perm/sec)   p_kst 6.771429e-03   p_cons 1.145429e-01   p_joint 6.400000e-03

Joint ci ratio: 1.679621e-01	ci left: 6.194303e-03	ci right 7.341906e-03	k: 540	n:80000
Cons ci ratio: 3.856545e-02	ci left: 1.121649e-01	ci right 1.165881e-01	k: 9149	n:80000
KS ci ratio: 1.715088e-01	ci left: 5.930915e-03	ci right 7.055324e-03	k: 518	n:80000
TGFBR2   80000 perm   16 sec   (4946 perm/sec)   p_kst 6.475000e-03   p_cons 1.143625e-01   p_joint 6.750000e-03

Joint ci ratio: 1.742941e-01	ci left: 5.101646e-03	ci right 6.086188e-03	k: 502	n:90000
Cons ci ratio: 3.641733e-02	ci left: 1.119747e-01	ci right 1.161391e-01	k: 10264	n:90000
KS ci ratio: 1.608531e-01	ci left: 6.028054e-03	ci right 7.093014e-03	k: 589	n:90000
TGFBR2   90000 perm   19 sec   (4853 perm/sec)   p_kst 6.544444e-03   p_cons 1.140444e-01   p_joint 5.577778e-03

Joint ci ratio: 1.653335e-01	ci left: 5.127698e-03	ci right 6.061330e-03	k: 558	n:100000
Cons ci ratio: 3.446936e-02	ci left: 1.125426e-01	ci right 1.164998e-01	k: 11451	n:100000
KS ci ratio: 1.530170e-01	ci left: 6.020908e-03	ci right 7.028036e-03	k: 651	n:100000
TGFBR2   100000 perm   21 sec   (4764 perm/sec)   p_kst 6.510000e-03   p_cons 1.145100e-01   p_joint 5.580000e-03

Joint ci ratio: 1.556038e-01	ci left: 5.289857e-03	ci right 6.191048e-03	k: 630	n:110000
Cons ci ratio: 3.289948e-02	ci left: 1.124254e-01	ci right 1.161950e-01	k: 12573	n:110000
KS ci ratio: 1.445032e-01	ci left: 6.165051e-03	ci right 7.133964e-03	k: 730	n:110000
TGFBR2   110000 perm   23 sec   (4681 perm/sec)   p_kst 6.636364e-03   p_cons 1.143000e-01   p_joint 5.727273e-03

Joint ci ratio: 1.481551e-01	ci left: 5.370142e-03	ci right 6.237336e-03	k: 695	n:120000
Cons ci ratio: 3.150416e-02	ci left: 1.124719e-01	ci right 1.160801e-01	k: 13712	n:120000
KS ci ratio: 1.375252e-01	ci left: 6.262316e-03	ci right 7.195096e-03	k: 806	n:120000
TGFBR2   120000 perm   26 sec   (4599 perm/sec)   p_kst 6.716667e-03   p_cons 1.142667e-01   p_joint 5.791667e-03

Joint ci ratio: 1.419646e-01	ci left: 5.416681e-03	ci right 6.251747e-03	k: 757	n:130000
Cons ci ratio: 3.027139e-02	ci left: 1.125217e-01	ci right 1.159878e-01	k: 14852	n:130000
KS ci ratio: 1.318456e-01	ci left: 6.308364e-03	ci right 7.206157e-03	k: 877	n:130000
TGFBR2   130000 perm   29 sec   (4518 perm/sec)   p_kst 6.746154e-03   p_cons 1.142462e-01   p_joint 5.823077e-03

Joint ci ratio: 1.369109e-01	ci left: 5.422718e-03	ci right 6.226528e-03	k: 814	n:140000
Cons ci ratio: 2.918522e-02	ci left: 1.124816e-01	ci right 1.158201e-01	k: 15980	n:140000
KS ci ratio: 1.271538e-01	ci left: 6.313926e-03	ci right 7.178122e-03	k: 943	n:140000
TGFBR2   140000 perm   32 sec   (4443 perm/sec)   p_kst 6.735714e-03   p_cons 1.141429e-01   p_joint 5.814286e-03

Joint ci ratio: 1.322087e-01	ci left: 5.441301e-03	ci right 6.217988e-03	k: 873	n:150000
Cons ci ratio: 2.817101e-02	ci left: 1.127138e-01	ci right 1.159411e-01	k: 17148	n:150000
KS ci ratio: 1.228685e-01	ci left: 6.325700e-03	ci right 7.160204e-03	k: 1010	n:150000
TGFBR2   150000 perm   34 sec   (4375 perm/sec)   p_kst 6.733333e-03   p_cons 1.143200e-01   p_joint 5.820000e-03

Joint ci ratio: 1.278910e-01	ci left: 5.464025e-03	ci right 6.216551e-03	k: 933	n:160000
Cons ci ratio: 2.726491e-02	ci left: 1.128505e-01	ci right 1.159760e-01	k: 18305	n:160000
KS ci ratio: 1.188228e-01	ci left: 6.354626e-03	ci right 7.163403e-03	k: 1080	n:160000
TGFBR2   160000 perm   37 sec   (4289 perm/sec)   p_kst 6.750000e-03   p_cons 1.144063e-01   p_joint 5.831250e-03

Joint ci ratio: 1.244119e-01	ci left: 5.444535e-03	ci right 6.172474e-03	k: 986	n:170000
Cons ci ratio: 2.639887e-02	ci left: 1.132941e-01	ci right 1.163308e-01	k: 19517	n:170000
KS ci ratio: 1.155571e-01	ci left: 6.334836e-03	ci right 7.117423e-03	k: 1142	n:170000
TGFBR2   170000 perm   40 sec   (4225 perm/sec)   p_kst 6.717647e-03   p_cons 1.148059e-01   p_joint 5.800000e-03

Joint ci ratio: 1.103995e-01	ci left: 6.571393e-03	ci right 7.344614e-03	k: 1251	n:180000
Cons ci ratio: 2.567131e-02	ci left: 1.132092e-01	ci right 1.161587e-01	k: 20642	n:180000
KS ci ratio: 1.127352e-01	ci left: 6.295916e-03	ci right 7.053437e-03	k: 1200	n:180000
TGFBR2   180000 perm   43 sec   (4162 perm/sec)   p_kst 6.666667e-03   p_cons 1.146778e-01   p_joint 6.950000e-03

Joint ci ratio: 1.073550e-01	ci left: 6.594163e-03	ci right 7.347314e-03	k: 1323	n:190000
Cons ci ratio: 2.496581e-02	ci left: 1.134170e-01	ci right 1.162895e-01	k: 21821	n:190000
KS ci ratio: 1.097163e-01	ci left: 6.307375e-03	ci right 7.044639e-03	k: 1267	n:190000
TGFBR2   190000 perm   46 sec   (4105 perm/sec)   p_kst 6.668421e-03   p_cons 1.148474e-01   p_joint 6.963158e-03

Joint ci ratio: 1.054662e-01	ci left: 6.498050e-03	ci right 7.226354e-03	k: 1371	n:200000
Cons ci ratio: 2.434356e-02	ci left: 1.133712e-01	ci right 1.161700e-01	k: 22953	n:200000
KS ci ratio: 1.066866e-01	ci left: 6.347136e-03	ci right 7.067274e-03	k: 1340	n:200000
TGFBR2   200000 perm   49 sec   (4049 perm/sec)   p_kst 6.700000e-03   p_cons 1.147650e-01   p_joint 6.855000e-03

Joint ci ratio: 1.026950e-01	ci left: 6.536472e-03	ci right 7.248670e-03	k: 1446	n:210000
Cons ci ratio: 2.374170e-02	ci left: 1.135343e-01	ci right 1.162669e-01	k: 24128	n:210000
KS ci ratio: 1.037839e-01	ci left: 6.397280e-03	ci right 7.102153e-03	k: 1416	n:210000
TGFBR2   210000 perm   53 sec   (3993 perm/sec)   p_kst 6.742857e-03   p_cons 1.148952e-01   p_joint 6.885714e-03

Joint ci ratio: 1.093769e-01	ci left: 5.486940e-03	ci right 6.126187e-03	k: 1276	n:220000
Cons ci ratio: 2.318445e-02	ci left: 1.136652e-01	ci right 1.163359e-01	k: 25299	n:220000
KS ci ratio: 1.014830e-01	ci left: 6.394364e-03	ci right 7.082365e-03	k: 1481	n:220000
TGFBR2   220000 perm   56 sec   (3939 perm/sec)   p_kst 6.731818e-03   p_cons 1.149955e-01   p_joint 5.800000e-03

Joint ci ratio: 1.076252e-01	ci left: 5.426021e-03	ci right 6.047404e-03	k: 1318	n:230000
Cons ci ratio: 2.267338e-02	ci left: 1.137076e-01	ci right 1.163195e-01	k: 26452	n:230000
KS ci ratio: 9.975148e-02	ci left: 6.336736e-03	ci right 7.006222e-03	k: 1533	n:230000
TGFBR2   230000 perm   59 sec   (3885 perm/sec)   p_kst 6.665217e-03   p_cons 1.150087e-01   p_joint 5.730435e-03

Joint ci ratio: 9.709390e-02	ci left: 6.418168e-03	ci right 7.077163e-03	k: 1618	n:240000
Cons ci ratio: 2.219606e-02	ci left: 1.137345e-01	ci right 1.162914e-01	k: 27602	n:240000
KS ci ratio: 9.709390e-02	ci left: 6.418168e-03	ci right 7.077163e-03	k: 1618	n:240000
TGFBR2   240000 perm   63 sec   (3833 perm/sec)   p_kst 6.741667e-03   p_cons 1.150083e-01   p_joint 6.741667e-03

Outputting figure to mutsig2_images.part000000000174/TGFBR2.3_1811_240000_0.0067417_0.11501_0.0067417.png
                gene_name: TGFBR2
               theta_stop: 0.097 
                    nperm: 240000 
                     p_ks: 0.0067 
        ci_ks_bounds_left: 0.0064 
       ci_ks_bounds_right: 0.0071 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.0067 
     ci_joint_bounds_left: 0.0064 
    ci_joint_bounds_right: 0.0071 

Current progress: 49 percent done.
TGM7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.941688e-02	ci left: 7.950668e-01	ci right 8.107563e-01	k: 8030	n:10000
KS ci ratio: 2.640239e-02	ci left: 6.787147e-01	ci right 6.969757e-01	k: 6879	n:10000
TGM7   10000 perm   2 sec   (6499 perm/sec)   p_kst 6.879000e-01   p_cons 8.030000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000174/TGM7.3_2185_10000_0.6879_0.803_1.png
                gene_name: TGM7
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 51 percent done.
THBS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.251794e-02	ci left: 2.732942e-01	ci right 2.910328e-01	k: 2821	n:10000
Cons ci ratio: 6.958397e-02	ci left: 2.324462e-01	ci right 2.493050e-01	k: 2408	n:10000
KS ci ratio: 7.735992e-02	ci left: 1.963361e-01	ci right 2.122365e-01	k: 2042	n:10000
THBS3   10000 perm   2 sec   (6092 perm/sec)   p_kst 2.042000e-01   p_cons 2.408000e-01   p_joint 2.821000e-01

Outputting figure to mutsig2_images.part000000000174/THBS3.3_2963_10000_0.2042_0.2408_0.2821.png
                gene_name: THBS3
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 53 percent done.
THNSL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.369728e-02	ci left: 5.652404e-01	ci right 5.847159e-01	k: 5750	n:10000
Cons ci ratio: 3.531729e-02	ci left: 5.420892e-01	ci right 5.616806e-01	k: 5519	n:10000
KS ci ratio: 4.007393e-02	ci left: 4.790570e-01	ci right 4.987494e-01	k: 4889	n:10000
THNSL2   10000 perm   2 sec   (6456 perm/sec)   p_kst 4.889000e-01   p_cons 5.519000e-01   p_joint 5.750000e-01

Outputting figure to mutsig2_images.part000000000174/THNSL2.3_1487_10000_0.4889_0.5519_0.575.png
                gene_name: THNSL2
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.58 

Current progress: 56 percent done.
THOC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.269208e-02	ci left: 7.403801e-01	ci right 7.574747e-01	k: 7490	n:10000
Cons ci ratio: 3.091423e-02	ci left: 6.068871e-01	ci right 6.260450e-01	k: 6165	n:10000
KS ci ratio: 4.641806e-02	ci left: 4.065144e-01	ci right 4.259345e-01	k: 4162	n:10000
THOC5   10000 perm   2 sec   (5581 perm/sec)   p_kst 4.162000e-01   p_cons 6.165000e-01   p_joint 7.490000e-01

Outputting figure to mutsig2_images.part000000000174/THOC5.3_2128_10000_0.4162_0.6165_0.749.png
                gene_name: THOC5
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 58 percent done.
THRAP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.010399e-02	ci left: 1.854036e-01	ci right 2.009755e-01	k: 1931	n:10000
Cons ci ratio: 2.544131e-02	ci left: 6.945411e-01	ci right 7.125402e-01	k: 7036	n:10000
KS ci ratio: 1.822799e-01	ci left: 4.015916e-02	ci right 4.830902e-02	k: 441	n:10000
THRAP3   10000 perm   2 sec   (6213 perm/sec)   p_kst 4.410000e-02   p_cons 7.036000e-01   p_joint 1.931000e-01

Joint ci ratio: 8.208660e-02	ci left: 9.813315e-02	ci right 1.065829e-01	k: 2046	n:20000
Cons ci ratio: 1.816286e-02	ci left: 6.931929e-01	ci right 7.059490e-01	k: 13992	n:20000
KS ci ratio: 1.358782e-01	ci left: 3.722952e-02	ci right 4.270526e-02	k: 798	n:20000
THRAP3   20000 perm   4 sec   (5549 perm/sec)   p_kst 3.990000e-02   p_cons 6.996000e-01   p_joint 1.023000e-01

Joint ci ratio: 6.911802e-02	ci left: 9.347656e-02	ci right 1.002018e-01	k: 2904	n:30000
Cons ci ratio: 1.488652e-02	ci left: 6.927689e-01	ci right 7.031927e-01	k: 20940	n:30000
KS ci ratio: 1.105850e-01	ci left: 3.797276e-02	ci right 4.245017e-02	k: 1205	n:30000
THRAP3   30000 perm   6 sec   (5335 perm/sec)   p_kst 4.016667e-02   p_cons 6.980000e-01   p_joint 9.680000e-02

Joint ci ratio: 5.803666e-02	ci left: 9.939604e-02	ci right 1.053618e-01	k: 4094	n:40000
Cons ci ratio: 1.285319e-02	ci left: 6.947542e-01	ci right 7.037668e-01	k: 27971	n:40000
KS ci ratio: 9.652272e-02	ci left: 3.768543e-02	ci right 4.153177e-02	k: 1583	n:40000
THRAP3   40000 perm   8 sec   (5186 perm/sec)   p_kst 3.957500e-02   p_cons 6.992750e-01   p_joint 1.023500e-01

Outputting figure to mutsig2_images.part000000000174/THRAP3.3_2908_40000_0.039575_0.69927_0.10235.png
                gene_name: THRAP3
               theta_stop: 0.097 
                    nperm: 40000 
                     p_ks: 0.040 
        ci_ks_bounds_left: 0.038 
       ci_ks_bounds_right: 0.042 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.099 
    ci_joint_bounds_right: 0.11 

Current progress: 60 percent done.
THSD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.412142e-02	ci left: 1.708424e-01	ci right 1.859454e-01	k: 1783	n:10000
Cons ci ratio: 1.031915e-01	ci left: 1.195555e-01	ci right 1.326632e-01	k: 1260	n:10000
KS ci ratio: 6.219546e-02	ci left: 2.753738e-01	ci right 2.931520e-01	k: 2842	n:10000
THSD4   10000 perm   2 sec   (6060 perm/sec)   p_kst 2.842000e-01   p_cons 1.260000e-01   p_joint 1.783000e-01

Joint ci ratio: 4.860583e-02	ci left: 2.393989e-01	ci right 2.513752e-01	k: 4907	n:20000
Cons ci ratio: 7.236256e-02	ci left: 1.233007e-01	ci right 1.326078e-01	k: 2558	n:20000
KS ci ratio: 4.421801e-02	ci left: 2.758205e-01	ci right 2.883429e-01	k: 5641	n:20000
THSD4   20000 perm   4 sec   (5451 perm/sec)   p_kst 2.820500e-01   p_cons 1.279000e-01   p_joint 2.453500e-01

Outputting figure to mutsig2_images.part000000000174/THSD4.3_3125_20000_0.28205_0.1279_0.24535.png
                gene_name: THSD4
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 62 percent done.
THUMPD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.599742e-02	ci left: 6.853663e-01	ci right 7.035203e-01	k: 6945	n:10000
KS ci ratio: 2.351292e-02	ci left: 7.266365e-01	ci right 7.440262e-01	k: 7354	n:10000
THUMPD3   10000 perm   1 sec   (6876 perm/sec)   p_kst 7.354000e-01   p_cons 6.945000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000174/THUMPD3.3_1560_10000_0.7354_0.6945_1.png
                gene_name: THUMPD3
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 64 percent done.
TFPI2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.951618e-02	ci left: 1.536497e-01	ci right 1.681484e-01	k: 1608	n:10000
Cons ci ratio: 2.394432e-01	ci left: 2.296967e-02	ci right 2.931046e-02	k: 260	n:10000
KS ci ratio: 3.842576e-02	ci left: 5.000504e-01	ci right 5.197438e-01	k: 5099	n:10000
TFPI2   10000 perm   1 sec   (8064 perm/sec)   p_kst 5.099000e-01   p_cons 2.600000e-02   p_joint 1.608000e-01

Joint ci ratio: 1.109958e-01	ci left: 5.543290e-02	ci right 6.199612e-02	k: 1173	n:20000
Cons ci ratio: 1.715217e-01	ci left: 2.326367e-02	ci right 2.767576e-02	k: 508	n:20000
KS ci ratio: 2.700508e-02	ci left: 5.060464e-01	ci right 5.199499e-01	k: 10260	n:20000
TFPI2   20000 perm   3 sec   (7066 perm/sec)   p_kst 5.130000e-01   p_cons 2.540000e-02   p_joint 5.865000e-02

Joint ci ratio: 8.513746e-02	ci left: 6.318326e-02	ci right 6.883447e-02	k: 1979	n:30000
Cons ci ratio: 1.228321e-01	ci left: 3.081318e-02	ci right 3.487795e-02	k: 984	n:30000
KS ci ratio: 2.189031e-02	ci left: 5.109605e-01	ci right 5.223030e-01	k: 15499	n:30000
TFPI2   30000 perm   4 sec   (6687 perm/sec)   p_kst 5.166333e-01   p_cons 3.280000e-02   p_joint 6.596667e-02

Joint ci ratio: 7.918778e-02	ci left: 5.543460e-02	ci right 6.002987e-02	k: 2308	n:40000
Cons ci ratio: 1.051138e-01	ci left: 3.183116e-02	ci right 3.538697e-02	k: 1343	n:40000
KS ci ratio: 1.891166e-02	ci left: 5.129396e-01	ci right 5.227578e-01	k: 20714	n:40000
TFPI2   40000 perm   6 sec   (6428 perm/sec)   p_kst 5.178500e-01   p_cons 3.357500e-02   p_joint 5.770000e-02

Joint ci ratio: 6.679676e-02	ci left: 6.228347e-02	ci right 6.660726e-02	k: 3221	n:50000
Cons ci ratio: 9.310323e-02	ci left: 3.264362e-02	ci right 3.585075e-02	k: 1711	n:50000
KS ci ratio: 1.690676e-02	ci left: 5.137093e-01	ci right 5.224886e-01	k: 25905	n:50000
TFPI2   50000 perm   8 sec   (6218 perm/sec)   p_kst 5.181000e-01   p_cons 3.422000e-02   p_joint 6.442000e-02

Outputting figure to mutsig2_images.part000000000174/TFPI2.2_728_50000_0.5181_0.03422_0.06442.png
                gene_name: TFPI2
               theta_stop: 0.093 
                    nperm: 50000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.034 
      ci_cons_bounds_left: 0.033 
     ci_cons_bounds_right: 0.036 
                  p_joint: 0.064 
     ci_joint_bounds_left: 0.062 
    ci_joint_bounds_right: 0.067 

Current progress: 67 percent done.
TFRC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.934937e-02	ci left: 7.961830e-01	ci right 8.118395e-01	k: 8041	n:10000
KS ci ratio: 1.310676e-02	ci left: 8.934402e-01	ci right 9.053260e-01	k: 8995	n:10000
TFRC   10000 perm   1 sec   (6863 perm/sec)   p_kst 8.995000e-01   p_cons 8.041000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000174/TFRC.2_2355_10000_0.8995_0.8041_1.png
                gene_name: TFRC
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 69 percent done.
TGFB1I1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.504455e-02	ci left: 3.271384e-01	ci right 3.457570e-01	k: 3364	n:10000
KS ci ratio: 2.075816e-02	ci left: 7.727630e-01	ci right 7.890731e-01	k: 7810	n:10000
TGFB1I1   10000 perm   1 sec   (7521 perm/sec)   p_kst 7.810000e-01   p_cons 3.364000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000174/TGFB1I1.2_1430_10000_0.781_0.3364_1.png
                gene_name: TGFB1I1
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
TGIF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.659211e-02	ci left: 5.244645e-01	ci right 5.441155e-01	k: 5343	n:10000
Cons ci ratio: 6.189121e-02	ci left: 2.773546e-01	ci right 2.951701e-01	k: 2862	n:10000
KS ci ratio: 5.345604e-02	ci left: 3.402490e-01	ci right 3.590387e-01	k: 3496	n:10000
TGIF1   10000 perm   1 sec   (7321 perm/sec)   p_kst 3.496000e-01   p_cons 2.862000e-01   p_joint 5.343000e-01

Outputting figure to mutsig2_images.part000000000174/TGIF1.2_1300_10000_0.3496_0.2862_0.5343.png
                gene_name: TGIF1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 73 percent done.
TGM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.264082e-03	ci left: 9.861030e-01	ci right 9.904055e-01	k: 9884	n:10000
Cons ci ratio: 2.647618e-02	ci left: 6.775056e-01	ci right 6.957856e-01	k: 6867	n:10000
KS ci ratio: 1.499456e-02	ci left: 8.657021e-01	ci right 8.788802e-01	k: 8724	n:10000
TGM1   10000 perm   2 sec   (6624 perm/sec)   p_kst 8.724000e-01   p_cons 6.867000e-01   p_joint 9.884000e-01

Outputting figure to mutsig2_images.part000000000174/TGM1.2_2510_10000_0.8724_0.6867_0.9884.png
                gene_name: TGM1
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 76 percent done.
TGOLN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.508072e-02	ci left: 1.675982e-01	ci right 1.825915e-01	k: 1750	n:10000
Cons ci ratio: 1.161806e-01	ci left: 9.623212e-02	ci right 1.082007e-01	k: 1021	n:10000
KS ci ratio: 2.237835e-02	ci left: 7.456379e-01	ci right 7.626138e-01	k: 7542	n:10000
TGOLN2   10000 perm   1 sec   (7308 perm/sec)   p_kst 7.542000e-01   p_cons 1.021000e-01   p_joint 1.750000e-01

Joint ci ratio: 9.019006e-02	ci left: 8.239466e-02	ci right 9.022610e-02	k: 1725	n:20000
Cons ci ratio: 8.144539e-02	ci left: 9.955670e-02	ci right 1.080589e-01	k: 2075	n:20000
KS ci ratio: 1.582612e-02	ci left: 7.481208e-01	ci right 7.601053e-01	k: 15083	n:20000
TGOLN2   20000 perm   3 sec   (6490 perm/sec)   p_kst 7.541500e-01   p_cons 1.037500e-01   p_joint 8.625000e-02

Outputting figure to mutsig2_images.part000000000174/TGOLN2.2_1330_20000_0.75415_0.10375_0.08625.png
                gene_name: TGOLN2
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.100 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.086 
     ci_joint_bounds_left: 0.082 
    ci_joint_bounds_right: 0.090 

Current progress: 78 percent done.
TGS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.795959e-02	ci left: 5.061517e-01	ci right 5.258389e-01	k: 5160	n:10000
Cons ci ratio: 3.538873e-02	ci left: 5.410874e-01	ci right 5.606829e-01	k: 5509	n:10000
KS ci ratio: 4.559696e-02	ci left: 4.151844e-01	ci right 4.346594e-01	k: 4249	n:10000
TGS1   10000 perm   2 sec   (6654 perm/sec)   p_kst 4.249000e-01   p_cons 5.509000e-01   p_joint 5.160000e-01

Outputting figure to mutsig2_images.part000000000174/TGS1.2_2614_10000_0.4249_0.5509_0.516.png
                gene_name: TGS1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 80 percent done.
THAP10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.598880e-02	ci left: 8.503927e-01	ci right 8.641985e-01	k: 8574	n:10000
Cons ci ratio: 1.881661e-03	ci left: 9.966711e-01	ci right 9.986208e-01	k: 9978	n:10000
KS ci ratio: 3.321031e-02	ci left: 5.723604e-01	ci right 5.917917e-01	k: 5821	n:10000
THAP10   10000 perm   1 sec   (7409 perm/sec)   p_kst 5.821000e-01   p_cons 9.978000e-01   p_joint 8.574000e-01

Outputting figure to mutsig2_images.part000000000174/THAP10.2_786_10000_0.5821_0.9978_0.8574.png
                gene_name: THAP10
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 82 percent done.
THAP9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.784894e-02	ci left: 8.207633e-01	ci right 8.356450e-01	k: 8283	n:10000
Cons ci ratio: 3.805849e-02	ci left: 5.048513e-01	ci right 5.245401e-01	k: 5147	n:10000
KS ci ratio: 5.139383e-02	ci left: 3.582391e-01	ci right 3.772380e-01	k: 3677	n:10000
THAP9   10000 perm   2 sec   (6585 perm/sec)   p_kst 3.677000e-01   p_cons 5.147000e-01   p_joint 8.283000e-01

Outputting figure to mutsig2_images.part000000000174/THAP9.2_2732_10000_0.3677_0.5147_0.8283.png
                gene_name: THAP9
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 84 percent done.
THEG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.863654e-02	ci left: 3.841063e-01	ci right 4.033556e-01	k: 3937	n:10000
KS ci ratio: 2.833402e-02	ci left: 6.473999e-01	ci right 6.661087e-01	k: 6568	n:10000
THEG   10000 perm   1 sec   (7387 perm/sec)   p_kst 6.568000e-01   p_cons 3.937000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000174/THEG.2_1172_10000_0.6568_0.3937_1.png
                gene_name: THEG
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
THNSL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.255939e-02	ci left: 5.819908e-01	ci right 6.013557e-01	k: 5917	n:10000
Cons ci ratio: 4.690855e-02	ci left: 4.014334e-01	ci right 4.208184e-01	k: 4111	n:10000
KS ci ratio: 8.723287e-02	ci left: 1.606216e-01	ci right 1.753724e-01	k: 1679	n:10000
THNSL1   10000 perm   1 sec   (7061 perm/sec)   p_kst 1.679000e-01   p_cons 4.111000e-01   p_joint 5.917000e-01

Outputting figure to mutsig2_images.part000000000174/THNSL1.2_2236_10000_0.1679_0.4111_0.5917.png
                gene_name: THNSL1
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 89 percent done.
THRB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.448267e-02	ci left: 2.087570e-01	ci right 2.250082e-01	k: 2168	n:10000
KS ci ratio: 2.042418e-02	ci left: 7.783356e-01	ci right 7.944972e-01	k: 7865	n:10000
THRB   10000 perm   1 sec   (7244 perm/sec)   p_kst 7.865000e-01   p_cons 2.168000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000174/THRB.2_1418_10000_0.7865_0.2168_1.png
                gene_name: THRB
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
THSD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.429381e-02	ci left: 5.566188e-01	ci right 5.761425e-01	k: 5664	n:10000
Cons ci ratio: 4.218414e-02	ci left: 4.534885e-01	ci right 4.731329e-01	k: 4633	n:10000
KS ci ratio: 9.817468e-02	ci left: 1.307088e-01	ci right 1.443032e-01	k: 1374	n:10000
THSD1   10000 perm   2 sec   (6666 perm/sec)   p_kst 1.374000e-01   p_cons 4.633000e-01   p_joint 5.664000e-01

Outputting figure to mutsig2_images.part000000000174/THSD1.2_2575_10000_0.1374_0.4633_0.5664.png
                gene_name: THSD1
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 93 percent done.
THUMPD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.626217e-02	ci left: 3.175092e-01	ci right 3.359918e-01	k: 3267	n:10000
Cons ci ratio: 1.064529e-01	ci left: 1.130085e-01	ci right 1.258142e-01	k: 1193	n:10000
KS ci ratio: 5.783299e-02	ci left: 3.056030e-01	ci right 3.239050e-01	k: 3147	n:10000
THUMPD1   10000 perm   1 sec   (7772 perm/sec)   p_kst 3.147000e-01   p_cons 1.193000e-01   p_joint 3.267000e-01

Joint ci ratio: 3.834976e-02	ci left: 3.365187e-01	ci right 3.497269e-01	k: 6862	n:20000
Cons ci ratio: 7.321807e-02	ci left: 1.207415e-01	ci right 1.299677e-01	k: 2506	n:20000
KS ci ratio: 4.147963e-02	ci left: 3.022512e-01	ci right 3.151045e-01	k: 6173	n:20000
THUMPD1   20000 perm   3 sec   (6787 perm/sec)   p_kst 3.086500e-01   p_cons 1.253000e-01   p_joint 3.431000e-01

Outputting figure to mutsig2_images.part000000000174/THUMPD1.2_1078_20000_0.30865_0.1253_0.3431.png
                gene_name: THUMPD1
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 96 percent done.
THUMPD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.297202e-02	ci left: 5.758711e-01	ci right 5.952790e-01	k: 5856	n:10000
Cons ci ratio: 6.070122e-02	ci left: 2.852798e-01	ci right 3.032402e-01	k: 2942	n:10000
KS ci ratio: 6.284356e-02	ci left: 2.712149e-01	ci right 2.889134e-01	k: 2800	n:10000
THUMPD2   10000 perm   1 sec   (7176 perm/sec)   p_kst 2.800000e-01   p_cons 2.942000e-01   p_joint 5.856000e-01

Outputting figure to mutsig2_images.part000000000174/THUMPD2.2_1552_10000_0.28_0.2942_0.5856.png
                gene_name: THUMPD2
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 98 percent done.
THY1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.252672e-02	ci left: 9.015493e-01	ci right 9.130121e-01	k: 9074	n:10000
Cons ci ratio: 8.954934e-02	ci left: 1.535515e-01	ci right 1.680467e-01	k: 1607	n:10000
KS ci ratio: 1.120715e-01	ci left: 1.028590e-01	ci right 1.151698e-01	k: 1089	n:10000
THY1   10000 perm   1 sec   (8102 perm/sec)   p_kst 1.089000e-01   p_cons 1.607000e-01   p_joint 9.074000e-01

Joint ci ratio: 6.265001e-02	ci left: 1.585469e-01	ci right 1.688511e-01	k: 3273	n:20000
Cons ci ratio: 6.339240e-02	ci left: 1.553880e-01	ci right 1.656109e-01	k: 3209	n:20000
KS ci ratio: 7.902445e-02	ci left: 1.052043e-01	ci right 1.139096e-01	k: 2190	n:20000
THY1   20000 perm   3 sec   (7132 perm/sec)   p_kst 1.095000e-01   p_cons 1.604500e-01   p_joint 1.636500e-01

Outputting figure to mutsig2_images.part000000000174/THY1.2_498_20000_0.1095_0.16045_0.16365.png
                gene_name: THY1
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000174
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 174 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1726>
Subject: Job 8004619: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1726>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000175> was used as the working directory.
Started at Sun Nov 11 15:21:49 2012
Results reported at Sun Nov 11 15:27:25 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000175.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000175.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 175  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000175.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    327.59 sec.
    Max Memory :      4774 MB
    Max Swap   :      7035 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
175
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 175
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 175: processing genes 15743 - 15832
Calculating significance of each gene.
Using projection method.
15743	TIFAB	3.966385e-01
15744	TIGD2	1
15745	TIGD3	5.098373e-02
15746	TIGD4	7.654322e-01
15747	TIGD5	6.279963e-01
15748	TIGD6	7.767463e-01
15749	TIGD7	5.738706e-01
15750	TIGIT	1
15751	TIMD4	7.294375e-03
15752	TIMELESS	8.651370e-01
15753	TIMM10	1
15754	TIMM13	1
15755	TIMM16	1
15756	TIMM17A	9.455002e-02
15757	TIMM17B	1.049087e-01
15758	TIMM22	1
15759	TIMM23	1
15760	TIMM44	7.300735e-01
15761	TIMM50	6.796509e-01
15762	TIMM8A	1
15763	TIMM8B	1
15764	TIMM9	1
15765	TIMP1	1
15766	TIMP2	5.840880e-01
15767	TIMP3	1
15768	TIMP4	5.362096e-01
15769	TINAG	2.387274e-01
15770	TINAGL1	6.132892e-01
15771	TINF2	1
15772	TIPARP	8.340906e-01
15773	TIPIN	1
15774	TIPRL	1
15775	TIRAP	1
15776	TJAP1	9.267170e-01
15777	TJP1	2.508294e-01
15778	TJP2	8.816717e-01
15779	TJP3	9.403348e-01
15780	TK1	1
15781	TK2	1
15782	TKT	8.668448e-01
15783	TKTL1	1
15784	TKTL2	9.316499e-03
15785	TLCD1	1
15786	TLE1	3.618673e-01
15787	TLE2	3.580953e-01
15788	TLE3	6.617932e-01
15789	TLE4	9.264800e-01
15790	TLE6	8.160723e-01
15791	TLK1	6.168168e-01
15792	TLK2	8.750353e-01
15793	TLL1	4.187629e-01
15794	TLL2	7.249876e-01
15795	TLN1	9.701580e-01
15796	TLN2	9.795538e-01
15797	TLR1	6.916929e-01
15798	TLR10	1
15799	TLR2	1
15800	TLR3	1
15801	TLR4	7.238282e-01
15802	TLR5	7.864898e-01
15803	TLR6	1
15804	TLR7	9.465630e-01
15805	TLR8	7.089990e-01
15806	TLR9	9.082049e-01
15807	TLX1	4.817671e-01
15808	TLX1NB	1
15809	TLX2	1
15810	TLX3	1
15811	TM2D1	1
15812	TM2D2	1
15813	TM2D3	4.244298e-01
15814	TM4SF1	2.389012e-01
15815	TM4SF18	3.722469e-01
15816	TM4SF19	4.857612e-01
15817	TM4SF20	3.823283e-01
15818	TM4SF4	1
15819	TM4SF5	3.583612e-01
15820	TM6SF1	5.406199e-01
15821	TM6SF2	1.064327e-01
15822	TM7SF2	4.910009e-01
15823	TM7SF3	6.896068e-01
15824	TM7SF4	1
15825	TM9SF1	8.173922e-01
15826	TM9SF2	6.374511e-01
15827	TM9SF3	6.395250e-01
15828	TM9SF4	1
15829	TMBIM1	5.518572e-01
15830	TMBIM4	1
15831	TMBIM6	6.077601e-01
15832	TMC1	7.443972e-01
Done

Running MutSig 2:
Scatter job 175: processing genes 15743 - 15832
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
TLN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.095686e-02	ci left: 9.223452e-01	ci right 9.326041e-01	k: 9276	n:10000
Cons ci ratio: 1.634004e-02	ci left: 8.448877e-01	ci right 8.589066e-01	k: 8520	n:10000
KS ci ratio: 2.817083e-02	ci left: 6.500161e-01	ci right 6.686910e-01	k: 6594	n:10000
TLN2   10000 perm   3 sec   (3877 perm/sec)   p_kst 6.594000e-01   p_cons 8.520000e-01   p_joint 9.276000e-01

Outputting figure to mutsig2_images.part000000000175/TLN2.14_7853_10000_0.6594_0.852_0.9276.png
                gene_name: TLN2
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 3 percent done.
TKTL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.810217e-02	ci left: 3.036194e-01	ci right 3.218898e-01	k: 3127	n:10000
Cons ci ratio: 1.833616e-02	ci left: 8.128353e-01	ci right 8.279776e-01	k: 8205	n:10000
KS ci ratio: 9.623583e-02	ci left: 1.354096e-01	ci right 1.491994e-01	k: 1422	n:10000
TKTL2   10000 perm   2 sec   (5701 perm/sec)   p_kst 1.422000e-01   p_cons 8.205000e-01   p_joint 3.127000e-01

Outputting figure to mutsig2_images.part000000000175/TKTL2.11_1885_10000_0.1422_0.8205_0.3127.png
                gene_name: TKTL2
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 5 percent done.
TLR4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.949261e-02	ci left: 3.758456e-01	ci right 3.950212e-01	k: 3854	n:10000
Cons ci ratio: 1.707186e-02	ci left: 8.332766e-01	ci right 8.477245e-01	k: 8406	n:10000
KS ci ratio: 7.094230e-02	ci left: 2.255330e-01	ci right 2.422223e-01	k: 2338	n:10000
TLR4   10000 perm   2 sec   (4907 perm/sec)   p_kst 2.338000e-01   p_cons 8.406000e-01   p_joint 3.854000e-01

Outputting figure to mutsig2_images.part000000000175/TLR4.10_2532_10000_0.2338_0.8406_0.3854.png
                gene_name: TLR4
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 8 percent done.
TJP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.752138e-02	ci left: 6.604841e-01	ci right 6.790169e-01	k: 6698	n:10000
Cons ci ratio: 5.032798e-02	ci left: 3.679857e-01	ci right 3.870857e-01	k: 3775	n:10000
KS ci ratio: 2.739707e-02	ci left: 6.624978e-01	ci right 6.810020e-01	k: 6718	n:10000
TJP1   10000 perm   2 sec   (4442 perm/sec)   p_kst 6.718000e-01   p_cons 3.775000e-01   p_joint 6.698000e-01

Outputting figure to mutsig2_images.part000000000175/TJP1.9_5359_10000_0.6718_0.3775_0.6698.png
                gene_name: TJP1
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 10 percent done.
TIMD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.063115e-02	ci left: 4.721630e-01	ci right 4.918475e-01	k: 4820	n:10000
Cons ci ratio: 8.377868e-02	ci left: 1.720224e-01	ci right 1.871647e-01	k: 1795	n:10000
KS ci ratio: 3.034183e-02	ci left: 6.157275e-01	ci right 6.347995e-01	k: 6253	n:10000
TIMD4   10000 perm   2 sec   (6430 perm/sec)   p_kst 6.253000e-01   p_cons 1.795000e-01   p_joint 4.820000e-01

Outputting figure to mutsig2_images.part000000000175/TIMD4.6_1173_10000_0.6253_0.1795_0.482.png
                gene_name: TIMD4
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 13 percent done.
TLN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.369932e-02	ci left: 4.360249e-01	ci right 4.556067e-01	k: 4458	n:10000
Cons ci ratio: 1.211278e-02	ci left: 9.072023e-01	ci right 9.183559e-01	k: 9129	n:10000
KS ci ratio: 5.359736e-02	ci left: 3.390568e-01	ci right 3.578316e-01	k: 3484	n:10000
TLN1   10000 perm   2 sec   (4301 perm/sec)   p_kst 3.484000e-01   p_cons 9.129000e-01   p_joint 4.458000e-01

Outputting figure to mutsig2_images.part000000000175/TLN1.6_7850_10000_0.3484_0.9129_0.4458.png
                gene_name: TLN1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 15 percent done.
TIGD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.608058e-02	ci left: 5.314728e-01	ci right 5.511031e-01	k: 5413	n:10000
KS ci ratio: 2.650079e-02	ci left: 6.771026e-01	ci right 6.953888e-01	k: 6863	n:10000
TIGD3   10000 perm   2 sec   (5794 perm/sec)   p_kst 6.863000e-01   p_cons 5.413000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000175/TIGD3.5_1420_10000_0.6863_0.5413_1.png
                gene_name: TIGD3
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 18 percent done.
TLL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.306326e-02	ci left: 8.940557e-01	ci right 9.059101e-01	k: 9001	n:10000
Cons ci ratio: 2.733497e-02	ci left: 6.635047e-01	ci right 6.819946e-01	k: 6728	n:10000
KS ci ratio: 2.857317e-02	ci left: 6.435768e-01	ci right 6.623341e-01	k: 6530	n:10000
TLL1   10000 perm   2 sec   (5817 perm/sec)   p_kst 6.530000e-01   p_cons 6.728000e-01   p_joint 9.001000e-01

Outputting figure to mutsig2_images.part000000000175/TLL1.5_3126_10000_0.653_0.6728_0.9001.png
                gene_name: TLL1
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.91 

Current progress: 21 percent done.
TM7SF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.316256e-02	ci left: 5.730625e-01	ci right 5.924892e-01	k: 5828	n:10000
Cons ci ratio: 4.585912e-02	ci left: 4.123937e-01	ci right 4.318517e-01	k: 4221	n:10000
KS ci ratio: 4.110596e-02	ci left: 4.663694e-01	ci right 4.860444e-01	k: 4762	n:10000
TM7SF4   10000 perm   2 sec   (6073 perm/sec)   p_kst 4.762000e-01   p_cons 4.221000e-01   p_joint 5.828000e-01

Outputting figure to mutsig2_images.part000000000175/TM7SF4.5_1425_10000_0.4762_0.4221_0.5828.png
                gene_name: TM7SF4
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 23 percent done.
TMC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.701460e-01	ci left: 4.609774e-02	ci right 5.476655e-02	k: 503	n:10000
Cons ci ratio: 2.765105e-01	ci left: 1.697368e-02	ci right 2.251108e-02	k: 196	n:10000
KS ci ratio: 5.765918e-02	ci left: 3.068925e-01	ci right 3.252147e-01	k: 3160	n:10000
TMC1   10000 perm   2 sec   (6006 perm/sec)   p_kst 3.160000e-01   p_cons 1.960000e-02   p_joint 5.030000e-02

Joint ci ratio: 6.770383e-02	ci left: 1.386683e-01	ci right 1.484355e-01	k: 2870	n:20000
Cons ci ratio: 1.942734e-01	ci left: 1.800953e-02	ci right 2.193178e-02	k: 398	n:20000
KS ci ratio: 4.129089e-02	ci left: 3.041898e-01	ci right 3.170653e-01	k: 6212	n:20000
TMC1   20000 perm   4 sec   (5467 perm/sec)   p_kst 3.106000e-01   p_cons 1.990000e-02   p_joint 1.435000e-01

Joint ci ratio: 6.239548e-02	ci left: 1.126272e-01	ci right 1.199140e-01	k: 3487	n:30000
Cons ci ratio: 1.607620e-01	ci left: 1.786925e-02	ci right 2.102478e-02	k: 582	n:30000
KS ci ratio: 3.386801e-02	ci left: 3.034414e-01	ci right 3.139290e-01	k: 9260	n:30000
TMC1   30000 perm   6 sec   (5227 perm/sec)   p_kst 3.086667e-01   p_cons 1.940000e-02   p_joint 1.162333e-01

Joint ci ratio: 6.763318e-02	ci left: 7.484871e-02	ci right 8.011283e-02	k: 3098	n:40000
Cons ci ratio: 1.365035e-01	ci left: 1.881957e-02	ci right 2.160069e-02	k: 807	n:40000
KS ci ratio: 2.949285e-02	ci left: 3.018093e-01	ci right 3.108688e-01	k: 12253	n:40000
TMC1   40000 perm   8 sec   (5098 perm/sec)   p_kst 3.063250e-01   p_cons 2.017500e-02   p_joint 7.745000e-02

Joint ci ratio: 8.021946e-02	ci left: 4.374863e-02	ci right 4.742437e-02	k: 2278	n:50000
Cons ci ratio: 1.206976e-01	ci left: 1.941168e-02	ci right 2.192440e-02	k: 1032	n:50000
KS ci ratio: 2.637239e-02	ci left: 3.024004e-01	ci right 3.105020e-01	k: 15322	n:50000
TMC1   50000 perm   10 sec   (4965 perm/sec)   p_kst 3.064400e-01   p_cons 2.064000e-02   p_joint 4.556000e-02

Joint ci ratio: 7.900138e-02	ci left: 3.785733e-02	ci right 4.098742e-02	k: 2364	n:60000
Cons ci ratio: 1.109887e-01	ci left: 1.923514e-02	ci right 2.151158e-02	k: 1221	n:60000
KS ci ratio: 2.408932e-02	ci left: 3.024965e-01	ci right 3.098889e-01	k: 18371	n:60000
TMC1   60000 perm   12 sec   (4853 perm/sec)   p_kst 3.061833e-01   p_cons 2.035000e-02   p_joint 3.940000e-02

Joint ci ratio: 6.108748e-02	ci left: 5.385747e-02	ci right 5.726521e-02	k: 3888	n:70000
Cons ci ratio: 1.024869e-01	ci left: 1.942126e-02	ci right 2.153304e-02	k: 1432	n:70000
KS ci ratio: 2.235122e-02	ci left: 3.018466e-01	ci right 3.086838e-01	k: 21368	n:70000
TMC1   70000 perm   15 sec   (4747 perm/sec)   p_kst 3.052571e-01   p_cons 2.045714e-02   p_joint 5.554286e-02

Joint ci ratio: 6.112196e-02	ci left: 4.740340e-02	ci right 5.040442e-02	k: 3911	n:80000
Cons ci ratio: 9.701447e-02	ci left: 1.902885e-02	ci right 2.098118e-02	k: 1599	n:80000
KS ci ratio: 2.093400e-02	ci left: 3.015363e-01	ci right 3.079279e-01	k: 24378	n:80000
TMC1   80000 perm   17 sec   (4674 perm/sec)   p_kst 3.047250e-01   p_cons 1.998750e-02   p_joint 4.888750e-02

Outputting figure to mutsig2_images.part000000000175/TMC1.5_2363_80000_0.30473_0.019987_0.048888.png
                gene_name: TMC1
               theta_stop: 0.097 
                    nperm: 80000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.020 
      ci_cons_bounds_left: 0.019 
     ci_cons_bounds_right: 0.021 
                  p_joint: 0.049 
     ci_joint_bounds_left: 0.047 
    ci_joint_bounds_right: 0.050 

Current progress: 26 percent done.
TJAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.381275e-02	ci left: 8.832939e-01	ci right 8.956782e-01	k: 8896	n:10000
Cons ci ratio: 6.434124e-02	ci left: 2.619103e-01	ci right 2.794235e-01	k: 2706	n:10000
KS ci ratio: 2.737843e-02	ci left: 6.627999e-01	ci right 6.812998e-01	k: 6721	n:10000
TJAP1   10000 perm   2 sec   (6140 perm/sec)   p_kst 6.721000e-01   p_cons 2.706000e-01   p_joint 8.896000e-01

Outputting figure to mutsig2_images.part000000000175/TJAP1.4_1706_10000_0.6721_0.2706_0.8896.png
                gene_name: TJAP1
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.90 

Current progress: 28 percent done.
TLE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.979389e-02	ci left: 2.313597e-01	ci right 2.481922e-01	k: 2397	n:10000
KS ci ratio: 1.504163e-02	ci left: 8.649871e-01	ci right 8.781956e-01	k: 8717	n:10000
TLE1   10000 perm   2 sec   (6040 perm/sec)   p_kst 8.717000e-01   p_cons 2.397000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000175/TLE1.4_2393_10000_0.8717_0.2397_1.png
                gene_name: TLE1
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 31 percent done.
TLE3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.202320e-02	ci left: 5.900191e-01	ci right 6.093228e-01	k: 5997	n:10000
Cons ci ratio: 7.227413e-02	ci left: 2.190177e-01	ci right 2.355415e-01	k: 2272	n:10000
KS ci ratio: 3.185010e-02	ci left: 5.926288e-01	ci right 6.119116e-01	k: 6023	n:10000
TLE3   10000 perm   2 sec   (5895 perm/sec)   p_kst 6.023000e-01   p_cons 2.272000e-01   p_joint 5.997000e-01

Outputting figure to mutsig2_images.part000000000175/TLE3.4_2399_10000_0.6023_0.2272_0.5997.png
                gene_name: TLE3
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 33 percent done.
TLL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.629793e-02	ci left: 6.804278e-01	ci right 6.986616e-01	k: 6896	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
TLL2   10000 perm   2 sec   (5620 perm/sec)   p_kst 1   p_cons 6.896000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000175/TLL2.4_3132_10000_1_0.6896_1.png
                gene_name: TLL2
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 36 percent done.
TIGD5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.969102e-02	ci left: 4.838540e-01	ci right 5.035497e-01	k: 4937	n:10000
Cons ci ratio: 3.326494e-02	ci left: 5.715581e-01	ci right 5.909945e-01	k: 5813	n:10000
KS ci ratio: 5.929916e-02	ci left: 2.949926e-01	ci right 3.131216e-01	k: 3040	n:10000
TIGD5   10000 perm   1 sec   (6764 perm/sec)   p_kst 3.040000e-01   p_cons 5.813000e-01   p_joint 4.937000e-01

Outputting figure to mutsig2_images.part000000000175/TIGD5.3_1933_10000_0.304_0.5813_0.4937.png
                gene_name: TIGD5
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 38 percent done.
TIMELESS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.270515e-02	ci left: 4.473998e-01	ci right 4.670251e-01	k: 4572	n:10000
Cons ci ratio: 1.291031e-02	ci left: 8.962104e-01	ci right 9.079542e-01	k: 9022	n:10000
KS ci ratio: 5.255174e-02	ci left: 3.479998e-01	ci right 3.668833e-01	k: 3574	n:10000
TIMELESS   10000 perm   2 sec   (5497 perm/sec)   p_kst 3.574000e-01   p_cons 9.022000e-01   p_joint 4.572000e-01

Outputting figure to mutsig2_images.part000000000175/TIMELESS.3_3739_10000_0.3574_0.9022_0.4572.png
                gene_name: TIMELESS
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 41 percent done.
TINAG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.101545e-02	ci left: 4.674681e-01	ci right 4.871451e-01	k: 4773	n:10000
Cons ci ratio: 9.240747e-02	ci left: 1.454077e-01	ci right 1.595954e-01	k: 1524	n:10000
KS ci ratio: 2.547790e-02	ci left: 6.939360e-01	ci right 7.119456e-01	k: 7030	n:10000
TINAG   10000 perm   2 sec   (6637 perm/sec)   p_kst 7.030000e-01   p_cons 1.524000e-01   p_joint 4.773000e-01

Outputting figure to mutsig2_images.part000000000175/TINAG.3_1475_10000_0.703_0.1524_0.4773.png
                gene_name: TINAG
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 44 percent done.
TJP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.722967e-02	ci left: 3.981463e-01	ci right 4.175075e-01	k: 4078	n:10000
Cons ci ratio: 7.052912e-02	ci left: 2.276066e-01	ci right 2.443474e-01	k: 2359	n:10000
KS ci ratio: 7.023701e-02	ci left: 2.290880e-01	ci right 2.458652e-01	k: 2374	n:10000
TJP2   10000 perm   2 sec   (5559 perm/sec)   p_kst 2.374000e-01   p_cons 2.359000e-01   p_joint 4.078000e-01

Outputting figure to mutsig2_images.part000000000175/TJP2.3_3924_10000_0.2374_0.2359_0.4078.png
                gene_name: TJP2
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 46 percent done.
TLE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.000613e-02	ci left: 6.209529e-01	ci right 6.399710e-01	k: 6305	n:10000
KS ci ratio: 1.561441e-02	ci left: 8.562070e-01	ci right 8.697808e-01	k: 8631	n:10000
TLE2   10000 perm   2 sec   (6300 perm/sec)   p_kst 8.631000e-01   p_cons 6.305000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000175/TLE2.3_2382_10000_0.8631_0.6305_1.png
                gene_name: TLE2
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 49 percent done.
TLK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.419618e-02	ci left: 5.580221e-01	ci right 5.775384e-01	k: 5678	n:10000
Cons ci ratio: 3.172396e-02	ci left: 5.945361e-01	ci right 6.138031e-01	k: 6042	n:10000
KS ci ratio: 5.453085e-02	ci left: 3.313090e-01	ci right 3.499839e-01	k: 3406	n:10000
TLK1   10000 perm   2 sec   (5885 perm/sec)   p_kst 3.406000e-01   p_cons 6.042000e-01   p_joint 5.678000e-01

Outputting figure to mutsig2_images.part000000000175/TLK1.3_2431_10000_0.3406_0.6042_0.5678.png
                gene_name: TLK1
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 51 percent done.
TLR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.451772e-02	ci left: 5.534115e-01	ci right 5.729516e-01	k: 5632	n:10000
Cons ci ratio: 4.126282e-02	ci left: 4.644718e-01	ci right 4.841432e-01	k: 4743	n:10000
KS ci ratio: 6.541742e-02	ci left: 2.554791e-01	ci right 2.728584e-01	k: 2641	n:10000
TLR2   10000 perm   2 sec   (6007 perm/sec)   p_kst 2.641000e-01   p_cons 4.743000e-01   p_joint 5.632000e-01

Outputting figure to mutsig2_images.part000000000175/TLR2.3_2359_10000_0.2641_0.4743_0.5632.png
                gene_name: TLR2
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 54 percent done.
TLR7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.401300e-02	ci left: 3.355799e-01	ci right 3.543105e-01	k: 3449	n:10000
Cons ci ratio: 4.962867e-02	ci left: 3.745520e-01	ci right 3.937155e-01	k: 3841	n:10000
KS ci ratio: 6.875699e-02	ci left: 2.367933e-01	ci right 2.537553e-01	k: 2452	n:10000
TLR7   10000 perm   2 sec   (5697 perm/sec)   p_kst 2.452000e-01   p_cons 3.841000e-01   p_joint 3.449000e-01

Outputting figure to mutsig2_images.part000000000175/TLR7.3_3158_10000_0.2452_0.3841_0.3449.png
                gene_name: TLR7
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 56 percent done.
TLR8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.195656e-02	ci left: 5.910228e-01	ci right 6.103185e-01	k: 6007	n:10000
Cons ci ratio: 1.677804e-02	ci left: 8.379602e-01	ci right 8.522382e-01	k: 8452	n:10000
KS ci ratio: 4.514284e-02	ci left: 4.200689e-01	ci right 4.395720e-01	k: 4298	n:10000
TLR8   10000 perm   2 sec   (6192 perm/sec)   p_kst 4.298000e-01   p_cons 8.452000e-01   p_joint 6.007000e-01

Outputting figure to mutsig2_images.part000000000175/TLR8.3_3134_10000_0.4298_0.8452_0.6007.png
                gene_name: TLR8
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 59 percent done.
TM2D3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.759937e-02	ci left: 1.320796e-01	ci right 1.457315e-01	k: 1388	n:10000
Cons ci ratio: 1.774850e-02	ci left: 8.223902e-01	ci right 8.372171e-01	k: 8299	n:10000
KS ci ratio: 2.676375e-01	ci left: 1.818649e-02	ci right 2.389730e-02	k: 209	n:10000
TM2D3   10000 perm   1 sec   (6807 perm/sec)   p_kst 2.090000e-02   p_cons 8.299000e-01   p_joint 1.388000e-01

Joint ci ratio: 4.690258e-02	ci left: 2.527405e-01	ci right 2.649297e-01	k: 5176	n:20000
Cons ci ratio: 1.257399e-02	ci left: 8.240634e-01	ci right 8.345407e-01	k: 16587	n:20000
KS ci ratio: 2.010635e-01	ci left: 1.677277e-02	ci right 2.056900e-02	k: 372	n:20000
TM2D3   20000 perm   3 sec   (6073 perm/sec)   p_kst 1.860000e-02   p_cons 8.293500e-01   p_joint 2.588000e-01

Joint ci ratio: 5.599964e-02	ci left: 1.364542e-01	ci right 1.443489e-01	k: 4211	n:30000
Cons ci ratio: 1.025500e-02	ci left: 8.253642e-01	ci right 8.339052e-01	k: 24890	n:30000
KS ci ratio: 1.639452e-01	ci left: 1.716520e-02	ci right 2.026233e-02	k: 560	n:30000
TM2D3   30000 perm   5 sec   (5791 perm/sec)   p_kst 1.866667e-02   p_cons 8.296667e-01   p_joint 1.403667e-01

Joint ci ratio: 5.287648e-02	ci left: 1.175967e-01	ci right 1.240085e-01	k: 4831	n:40000
Cons ci ratio: 8.913733e-03	ci left: 8.248958e-01	ci right 8.323065e-01	k: 33145	n:40000
KS ci ratio: 1.415001e-01	ci left: 1.749153e-02	ci right 2.017897e-02	k: 752	n:40000
TM2D3   40000 perm   7 sec   (5603 perm/sec)   p_kst 1.880000e-02   p_cons 8.286250e-01   p_joint 1.207750e-01

Joint ci ratio: 6.247986e-02	ci left: 7.069526e-02	ci right 7.527447e-02	k: 3648	n:50000
Cons ci ratio: 7.979529e-03	ci left: 8.250460e-01	ci right 8.316758e-01	k: 41419	n:50000
KS ci ratio: 1.273396e-01	ci left: 1.741439e-02	ci right 1.980197e-02	k: 929	n:50000
TM2D3   50000 perm   9 sec   (5463 perm/sec)   p_kst 1.858000e-02   p_cons 8.283800e-01   p_joint 7.296000e-02

Joint ci ratio: 5.860156e-02	ci left: 6.736264e-02	ci right 7.144580e-02	k: 4163	n:60000
Cons ci ratio: 7.277770e-03	ci left: 8.255939e-01	ci right 8.316409e-01	k: 49718	n:60000
KS ci ratio: 1.151974e-01	ci left: 1.784160e-02	ci right 2.003862e-02	k: 1135	n:60000
TM2D3   60000 perm   11 sec   (5332 perm/sec)   p_kst 1.891667e-02   p_cons 8.286333e-01   p_joint 6.938333e-02

Joint ci ratio: 6.140577e-02	ci left: 5.332246e-02	ci right 5.671455e-02	k: 3850	n:70000
Cons ci ratio: 6.749525e-03	ci left: 8.253274e-01	ci right 8.309311e-01	k: 57970	n:70000
KS ci ratio: 1.066249e-01	ci left: 1.793190e-02	ci right 1.996539e-02	k: 1325	n:70000
TM2D3   70000 perm   13 sec   (5224 perm/sec)   p_kst 1.892857e-02   p_cons 8.281429e-01   p_joint 5.500000e-02

Joint ci ratio: 5.728950e-02	ci left: 5.370139e-02	ci right 5.688096e-02	k: 4422	n:80000
Cons ci ratio: 6.319533e-03	ci left: 8.252411e-01	ci right 8.304851e-01	k: 66230	n:80000
KS ci ratio: 9.931941e-02	ci left: 1.815054e-02	ci right 2.005956e-02	k: 1527	n:80000
TM2D3   80000 perm   16 sec   (5118 perm/sec)   p_kst 1.908750e-02   p_cons 8.278750e-01   p_joint 5.527500e-02

Outputting figure to mutsig2_images.part000000000175/TM2D3.3_768_80000_0.019088_0.82788_0.055275.png
                gene_name: TM2D3
               theta_stop: 0.099 
                    nperm: 80000 
                     p_ks: 0.019 
        ci_ks_bounds_left: 0.018 
       ci_ks_bounds_right: 0.020 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.055 
     ci_joint_bounds_left: 0.054 
    ci_joint_bounds_right: 0.057 

Current progress: 62 percent done.
TM6SF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.468708e-02	ci left: 7.070498e-01	ci right 7.248243e-01	k: 7160	n:10000
Cons ci ratio: 4.218414e-02	ci left: 4.534885e-01	ci right 4.731329e-01	k: 4633	n:10000
KS ci ratio: 2.542302e-02	ci left: 6.948436e-01	ci right 7.128375e-01	k: 7039	n:10000
TM6SF2   10000 perm   2 sec   (6311 perm/sec)   p_kst 7.039000e-01   p_cons 4.633000e-01   p_joint 7.160000e-01

Outputting figure to mutsig2_images.part000000000175/TM6SF2.3_1174_10000_0.7039_0.4633_0.716.png
                gene_name: TM6SF2
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.72 

Current progress: 64 percent done.
TIGD7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.070647e-01	ci left: 1.118366e-01	ci right 1.245868e-01	k: 1181	n:10000
Cons ci ratio: 9.537790e-02	ci left: 1.375651e-01	ci right 1.514427e-01	k: 1444	n:10000
KS ci ratio: 5.177165e-02	ci left: 3.548587e-01	ci right 3.738204e-01	k: 3643	n:10000
TIGD7   10000 perm   1 sec   (6907 perm/sec)   p_kst 3.643000e-01   p_cons 1.444000e-01   p_joint 1.181000e-01

Joint ci ratio: 5.507529e-02	ci left: 1.965038e-01	ci right 2.076829e-01	k: 4041	n:20000
Cons ci ratio: 7.205614e-02	ci left: 1.242359e-01	ci right 1.335722e-01	k: 2577	n:20000
KS ci ratio: 3.694220e-02	ci left: 3.534928e-01	ci right 3.668479e-01	k: 7203	n:20000
TIGD7   20000 perm   4 sec   (5570 perm/sec)   p_kst 3.601500e-01   p_cons 1.288500e-01   p_joint 2.020500e-01

Outputting figure to mutsig2_images.part000000000175/TIGD7.2_1654_20000_0.36015_0.12885_0.20205.png
                gene_name: TIGD7
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 67 percent done.
TIMM17A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.489509e-02	ci left: 4.227607e-01	ci right 4.422786e-01	k: 4325	n:10000
KS ci ratio: 6.099475e-02	ci left: 2.832982e-01	ci right 3.012230e-01	k: 2922	n:10000
TIMM17A   10000 perm   1 sec   (7294 perm/sec)   p_kst 2.922000e-01   p_cons 4.325000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000175/TIMM17A.2_540_10000_0.2922_0.4325_1.png
                gene_name: TIMM17A
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 69 percent done.
TINAGL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.098973e-01	ci left: 3.015459e-02	ci right 3.732038e-02	k: 336	n:10000
KS ci ratio: 8.341096e-02	ci left: 1.733008e-01	ci right 1.884856e-01	k: 1808	n:10000
TINAGL1   10000 perm   1 sec   (6774 perm/sec)   p_kst 1.808000e-01   p_cons 3.360000e-02   p_joint 1

Joint ci ratio: 5.099718e-02	ci left: 2.222004e-01	ci right 2.338788e-01	k: 4560	n:20000
Cons ci ratio: 1.481959e-01	ci left: 3.129024e-02	ci right 3.634648e-02	k: 675	n:20000
KS ci ratio: 5.933193e-02	ci left: 1.738079e-01	ci right 1.844856e-01	k: 3582	n:20000
TINAGL1   20000 perm   3 sec   (5915 perm/sec)   p_kst 1.791000e-01   p_cons 3.375000e-02   p_joint 2.280000e-01

Joint ci ratio: 3.053757e-02	ci left: 3.490846e-01	ci right 3.599436e-01	k: 10635	n:30000
Cons ci ratio: 1.196055e-01	ci left: 3.249563e-02	ci right 3.666180e-02	k: 1036	n:30000
KS ci ratio: 4.869584e-02	ci left: 1.732901e-01	ci right 1.819725e-01	k: 5328	n:30000
TINAGL1   30000 perm   5 sec   (5674 perm/sec)   p_kst 1.776000e-01   p_cons 3.453333e-02   p_joint 3.545000e-01

Joint ci ratio: 4.445084e-02	ci left: 1.591446e-01	ci right 1.664044e-01	k: 6510	n:40000
Cons ci ratio: 1.030299e-01	ci left: 3.312280e-02	ci right 3.674512e-02	k: 1396	n:40000
KS ci ratio: 4.239095e-02	ci left: 1.723783e-01	ci right 1.798688e-01	k: 7044	n:40000
TINAGL1   40000 perm   7 sec   (5521 perm/sec)   p_kst 1.761000e-01   p_cons 3.490000e-02   p_joint 1.627500e-01

Joint ci ratio: 3.975446e-02	ci left: 1.595538e-01	ci right 1.660454e-01	k: 8139	n:50000
Cons ci ratio: 9.082082e-02	ci left: 3.428630e-02	ci right 3.756786e-02	k: 1795	n:50000
KS ci ratio: 3.806331e-02	ci left: 1.716586e-01	ci right 1.783392e-01	k: 8749	n:50000
TINAGL1   50000 perm   9 sec   (5344 perm/sec)   p_kst 1.749800e-01   p_cons 3.590000e-02   p_joint 1.627800e-01

Outputting figure to mutsig2_images.part000000000175/TINAGL1.2_1448_50000_0.17498_0.0359_0.16278.png
                gene_name: TINAGL1
               theta_stop: 0.091 
                    nperm: 50000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.036 
      ci_cons_bounds_left: 0.034 
     ci_cons_bounds_right: 0.038 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 72 percent done.
TJP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.223354e-02	ci left: 7.480651e-01	ci right 7.649852e-01	k: 7566	n:10000
KS ci ratio: 5.798077e-02	ci left: 3.045120e-01	ci right 3.227967e-01	k: 3136	n:10000
TJP3   10000 perm   2 sec   (6200 perm/sec)   p_kst 3.136000e-01   p_cons 7.566000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000175/TJP3.2_2938_10000_0.3136_0.7566_1.png
                gene_name: TJP3
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 74 percent done.
TLR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.730395e-02	ci left: 6.640082e-01	ci right 6.824908e-01	k: 6733	n:10000
KS ci ratio: 1.348616e-01	ci left: 7.262363e-02	ci right 8.322381e-02	k: 778	n:10000
TLR1   10000 perm   2 sec   (6504 perm/sec)   p_kst 7.780000e-02   p_cons 6.733000e-01   p_joint 1

Joint ci ratio: 1.705607e-02	ci left: 7.191067e-01	ci right 7.315277e-01	k: 14507	n:20000
Cons ci ratio: 1.851137e-02	ci left: 6.850966e-01	ci right 6.979476e-01	k: 13831	n:20000
KS ci ratio: 9.457581e-02	ci left: 7.534699e-02	ci right 8.287592e-02	k: 1581	n:20000
TLR1   20000 perm   3 sec   (5843 perm/sec)   p_kst 7.905000e-02   p_cons 6.915500e-01   p_joint 7.253500e-01

Outputting figure to mutsig2_images.part000000000175/TLR1.2_2365_20000_0.07905_0.69155_0.72535.png
                gene_name: TLR1
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.079 
        ci_ks_bounds_left: 0.075 
       ci_ks_bounds_right: 0.083 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 77 percent done.
TLR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.649036e-02	ci left: 1.999823e-01	ci right 2.159882e-01	k: 2079	n:10000
Cons ci ratio: 1.166260e-01	ci left: 9.555040e-02	ci right 1.074829e-01	k: 1014	n:10000
KS ci ratio: 3.856436e-02	ci left: 4.982503e-01	ci right 5.179450e-01	k: 5081	n:10000
TLR3   10000 perm   2 sec   (6062 perm/sec)   p_kst 5.081000e-01   p_cons 1.014000e-01   p_joint 2.079000e-01

Joint ci ratio: 6.741621e-02	ci left: 1.397034e-01	ci right 1.495001e-01	k: 2891	n:20000
Cons ci ratio: 7.906498e-02	ci left: 1.051060e-01	ci right 1.138079e-01	k: 2188	n:20000
KS ci ratio: 2.777754e-02	ci left: 4.919461e-01	ci right 5.058542e-01	k: 9978	n:20000
TLR3   20000 perm   4 sec   (5418 perm/sec)   p_kst 4.989000e-01   p_cons 1.094000e-01   p_joint 1.445500e-01

Outputting figure to mutsig2_images.part000000000175/TLR3.2_2731_20000_0.4989_0.1094_0.14455.png
                gene_name: TLR3
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 79 percent done.
TLR5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.827749e-02	ci left: 6.483055e-01	ci right 6.670026e-01	k: 6577	n:10000
Cons ci ratio: 2.864885e-02	ci left: 6.423696e-01	ci right 6.611419e-01	k: 6518	n:10000
KS ci ratio: 5.093290e-02	ci left: 3.624157e-01	ci right 3.814590e-01	k: 3719	n:10000
TLR5   10000 perm   2 sec   (6562 perm/sec)   p_kst 3.719000e-01   p_cons 6.518000e-01   p_joint 6.577000e-01

Outputting figure to mutsig2_images.part000000000175/TLR5.2_2581_10000_0.3719_0.6518_0.6577.png
                gene_name: TLR5
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 82 percent done.
TLR9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.523170e-02	ci left: 5.432913e-01	ci right 5.628777e-01	k: 5531	n:10000
Cons ci ratio: 4.238824e-02	ci left: 4.510928e-01	ci right 4.707300e-01	k: 4609	n:10000
KS ci ratio: 6.939426e-02	ci left: 2.334341e-01	ci right 2.503165e-01	k: 2418	n:10000
TLR9   10000 perm   2 sec   (6200 perm/sec)   p_kst 2.418000e-01   p_cons 4.609000e-01   p_joint 5.531000e-01

Outputting figure to mutsig2_images.part000000000175/TLR9.2_3107_10000_0.2418_0.4609_0.5531.png
                gene_name: TLR9
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 85 percent done.
TM4SF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.034183e-02	ci left: 6.157275e-01	ci right 6.347995e-01	k: 6253	n:10000
Cons ci ratio: 5.785981e-02	ci left: 3.054047e-01	ci right 3.237035e-01	k: 3145	n:10000
KS ci ratio: 1.606713e-02	ci left: 8.491691e-01	ci right 8.630228e-01	k: 8562	n:10000
TM4SF1   10000 perm   1 sec   (6977 perm/sec)   p_kst 8.562000e-01   p_cons 3.145000e-01   p_joint 6.253000e-01

Outputting figure to mutsig2_images.part000000000175/TM4SF1.2_629_10000_0.8562_0.3145_0.6253.png
                gene_name: TM4SF1
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.63 

Current progress: 87 percent done.
TM4SF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.651450e-02	ci left: 8.421365e-01	ci right 8.562594e-01	k: 8493	n:10000
Cons ci ratio: 4.056430e-03	ci left: 9.873032e-01	ci right 9.914042e-01	k: 9895	n:10000
KS ci ratio: 1.186529e-01	ci left: 9.253239e-02	ci right 1.043027e-01	k: 983	n:10000
TM4SF4   10000 perm   1 sec   (7128 perm/sec)   p_kst 9.830000e-02   p_cons 9.895000e-01   p_joint 8.493000e-01

Joint ci ratio: 2.566646e-02	ci left: 5.314107e-01	ci right 5.452781e-01	k: 10767	n:20000
Cons ci ratio: 2.929615e-03	ci left: 9.874562e-01	ci right 9.903991e-01	k: 19780	n:20000
KS ci ratio: 8.350250e-02	ci left: 9.509059e-02	ci right 1.034263e-01	k: 1984	n:20000
TM4SF4   20000 perm   3 sec   (6579 perm/sec)   p_kst 9.920000e-02   p_cons 9.890000e-01   p_joint 5.383500e-01

Outputting figure to mutsig2_images.part000000000175/TM4SF4.2_629_20000_0.0992_0.989_0.53835.png
                gene_name: TM4SF4
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.099 
        ci_ks_bounds_left: 0.095 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 90 percent done.
TM7SF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.844174e-02	ci left: 3.011400e-01	ci right 3.193706e-01	k: 3102	n:10000
Cons ci ratio: 4.145358e-02	ci left: 4.621749e-01	ci right 4.818414e-01	k: 4720	n:10000
KS ci ratio: 1.074258e-01	ci left: 1.111530e-01	ci right 1.238707e-01	k: 1174	n:10000
TM7SF3   10000 perm   2 sec   (6494 perm/sec)   p_kst 1.174000e-01   p_cons 4.720000e-01   p_joint 3.102000e-01

Joint ci ratio: 2.374622e-02	ci left: 5.698168e-01	ci right 5.835609e-01	k: 11534	n:20000
Cons ci ratio: 2.917078e-02	ci left: 4.675087e-01	ci right 4.813988e-01	k: 9489	n:20000
KS ci ratio: 7.514990e-02	ci left: 1.152317e-01	ci right 1.242791e-01	k: 2394	n:20000
TM7SF3   20000 perm   3 sec   (5956 perm/sec)   p_kst 1.197000e-01   p_cons 4.744500e-01   p_joint 5.767000e-01

Outputting figure to mutsig2_images.part000000000175/TM7SF3.2_1761_20000_0.1197_0.47445_0.5767.png
                gene_name: TM7SF3
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.58 

Current progress: 92 percent done.
TM9SF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.374510e-02	ci left: 2.121107e-01	ci right 2.284526e-01	k: 2202	n:10000
Cons ci ratio: 8.811689e-02	ci left: 1.578715e-01	ci right 1.725241e-01	k: 1651	n:10000
KS ci ratio: 1.053537e-01	ci left: 1.151575e-01	ci right 1.280638e-01	k: 1215	n:10000
TM9SF2   10000 perm   2 sec   (6580 perm/sec)   p_kst 1.215000e-01   p_cons 1.651000e-01   p_joint 2.202000e-01

Joint ci ratio: 7.110923e-02	ci left: 1.271899e-01	ci right 1.366174e-01	k: 2637	n:20000
Cons ci ratio: 6.203928e-02	ci left: 1.612127e-01	ci right 1.715844e-01	k: 3327	n:20000
KS ci ratio: 7.391069e-02	ci left: 1.187242e-01	ci right 1.278856e-01	k: 2465	n:20000
TM9SF2   20000 perm   3 sec   (5777 perm/sec)   p_kst 1.232500e-01   p_cons 1.663500e-01   p_joint 1.318500e-01

Outputting figure to mutsig2_images.part000000000175/TM9SF2.2_2060_20000_0.12325_0.16635_0.13185.png
                gene_name: TM9SF2
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 95 percent done.
TM9SF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.427694e-02	ci left: 3.333947e-01	ci right 3.520970e-01	k: 3427	n:10000
KS ci ratio: 2.219129e-02	ci left: 7.487731e-01	ci right 7.656768e-01	k: 7573	n:10000
TM9SF3   10000 perm   2 sec   (6603 perm/sec)   p_kst 7.573000e-01   p_cons 3.427000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000175/TM9SF3.2_1830_10000_0.7573_0.3427_1.png
                gene_name: TM9SF3
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
TM9SF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.032345e-02	ci left: 2.878562e-01	ci right 3.058623e-01	k: 2968	n:10000
KS ci ratio: 4.157851e-02	ci left: 4.606770e-01	ci right 4.803401e-01	k: 4705	n:10000
TM9SF4   10000 perm   1 sec   (6775 perm/sec)   p_kst 4.705000e-01   p_cons 2.968000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000175/TM9SF4.2_2001_10000_0.4705_0.2968_1.png
                gene_name: TM9SF4
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000175
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 175 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1709>
Subject: Job 8004626: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1709>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000176> was used as the working directory.
Started at Sun Nov 11 15:22:04 2012
Results reported at Sun Nov 11 15:29:11 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000176.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000176.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 176  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000176.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    458.02 sec.
    Max Memory :      4741 MB
    Max Swap   :      7044 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
176
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 176
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 176: processing genes 15833 - 15923
Calculating significance of each gene.
Using projection method.
15833	TMC2	9.092632e-01
15834	TMC3	2.868755e-01
15835	TMC4	3.778357e-01
15836	TMC5	1
15837	TMC6	7.527262e-01
15838	TMC7	1
15839	TMC8	1
15840	TMCC1	4.352461e-01
15841	TMCC2	1
15842	TMCC3	2.541478e-02
15843	TMCO1	1.013818e-01
15844	TMCO2	1
15845	TMCO3	9.527771e-01
15846	TMCO4	8.354324e-01
15847	TMCO5A	2.371680e-01
15848	TMCO6	1
15849	TMCO7	1
15850	TMED1	1
15851	TMED10	1
15852	TMED2	3.158865e-01
15853	TMED3	1.680856e-01
15854	TMED4	1.890704e-01
15855	TMED5	3.429818e-01
15856	TMED6	1
15857	TMED7	1
15858	TMED7-TICAM2	1
15859	TMED8	1.977740e-01
15860	TMED9	5.655231e-01
15861	TMEFF1	5.934617e-01
15862	TMEFF2	5.346867e-01
15863	TMEM100	1.115643e-01
15864	TMEM101	4.525451e-01
15865	TMEM102	4.648391e-01
15866	TMEM104	1
15867	TMEM105	1
15868	TMEM106A	5.949463e-01
15869	TMEM106B	4.850975e-01
15870	TMEM106C	6.104023e-01
15871	TMEM107	7.791982e-02
15872	TMEM108	1
15873	TMEM109	5.198979e-01
15874	TMEM11	1
15875	TMEM110	1
15876	TMEM111	1
15877	TMEM115	1
15878	TMEM116	5.841738e-01
15879	TMEM117	1.198914e-01
15880	TMEM119	5.705330e-01
15881	TMEM120A	1
15882	TMEM120B	1
15883	TMEM123	1
15884	TMEM125	5.397063e-01
15885	TMEM126A	1
15886	TMEM126B	5.485009e-01
15887	TMEM127	1
15888	TMEM128	1
15889	TMEM130	7.674349e-01
15890	TMEM131	1.443922e-01
15891	TMEM132A	7.647385e-01
15892	TMEM132B	5.704522e-01
15893	TMEM132D	9.905632e-03
15894	TMEM132E	9.591306e-01
15895	TMEM133	1.507276e-01
15896	TMEM134	1.314148e-01
15897	TMEM135	1.886927e-01
15898	TMEM136	1
15899	TMEM138	1
15900	TMEM139	6.230112e-01
15901	TMEM140	2.054956e-01
15902	TMEM141	1
15903	TMEM143	7.155594e-01
15904	TMEM144	2.840630e-01
15905	TMEM145	8.328150e-01
15906	TMEM146	3.778182e-01
15907	TMEM147	1
15908	TMEM149	3.713616e-01
15909	TMEM14A	1
15910	TMEM14B	1
15911	TMEM14C	2.762595e-01
15912	TMEM14E	1
15913	TMEM150A	1
15914	TMEM150B	3.631753e-01
15915	TMEM150C	1
15916	TMEM151A	3.434081e-01
15917	TMEM154	1
15918	TMEM155	8.259243e-02
15919	TMEM156	7.151216e-01
15920	TMEM159	1
15921	TMEM161A	1.375322e-01
15922	TMEM161B	7.085933e-02
15923	TMEM163	2.983619e-01
Done

Running MutSig 2:
Scatter job 176: processing genes 15833 - 15923
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
TMEM132D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.013153e-01	ci left: 1.235648e-01	ci right 1.368514e-01	k: 1301	n:10000
Cons ci ratio: 9.592170e-02	ci left: 1.361934e-01	ci right 1.500152e-01	k: 1430	n:10000
KS ci ratio: 1.037097e-01	ci left: 1.184802e-01	ci right 1.315391e-01	k: 1249	n:10000
TMEM132D   10000 perm   2 sec   (4419 perm/sec)   p_kst 1.249000e-01   p_cons 1.430000e-01   p_joint 1.301000e-01

Joint ci ratio: 8.109712e-02	ci left: 1.003422e-01	ci right 1.088731e-01	k: 2091	n:20000
Cons ci ratio: 6.758020e-02	ci left: 1.391119e-01	ci right 1.488918e-01	k: 2879	n:20000
KS ci ratio: 7.416821e-02	ci left: 1.179862e-01	ci right 1.271238e-01	k: 2450	n:20000
TMEM132D   20000 perm   7 sec   (3002 perm/sec)   p_kst 1.225000e-01   p_cons 1.439500e-01   p_joint 1.045500e-01

Outputting figure to mutsig2_images.part000000000176/TMEM132D.22_3336_20000_0.1225_0.14395_0.10455.png
                gene_name: TMEM132D
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 3 percent done.
TMEM132B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.073636e-01	ci left: 3.091404e-02	ci right 3.816041e-02	k: 344	n:10000
Cons ci ratio: 1.313289e-01	ci left: 7.640391e-02	ci right 8.724117e-02	k: 817	n:10000
KS ci ratio: 1.432065e-01	ci left: 6.468834e-02	ci right 7.476406e-02	k: 696	n:10000
TMEM132B   10000 perm   2 sec   (4461 perm/sec)   p_kst 6.960000e-02   p_cons 8.170000e-02   p_joint 3.440000e-02

Joint ci ratio: 9.056383e-02	ci left: 8.175806e-02	ci right 8.956289e-02	k: 1712	n:20000
Cons ci ratio: 9.228307e-02	ci left: 7.891869e-02	ci right 8.660313e-02	k: 1654	n:20000
KS ci ratio: 1.016175e-01	ci left: 6.572047e-02	ci right 7.280538e-02	k: 1384	n:20000
TMEM132B   20000 perm   5 sec   (4076 perm/sec)   p_kst 6.920000e-02   p_cons 8.270000e-02   p_joint 8.560000e-02

Joint ci ratio: 1.105372e-01	ci left: 3.800521e-02	ci right 4.248439e-02	k: 1206	n:30000
Cons ci ratio: 7.524199e-02	ci left: 7.983646e-02	ci right 8.611125e-02	k: 2488	n:30000
KS ci ratio: 8.369824e-02	ci left: 6.527460e-02	ci right 7.100938e-02	k: 2043	n:30000
TMEM132B   30000 perm   8 sec   (3926 perm/sec)   p_kst 6.810000e-02   p_cons 8.293333e-02   p_joint 4.020000e-02

Joint ci ratio: 9.950387e-02	ci left: 3.548853e-02	ci right 3.922902e-02	k: 1493	n:40000
Cons ci ratio: 6.467065e-02	ci left: 8.139794e-02	ci right 8.686261e-02	k: 3364	n:40000
KS ci ratio: 7.473668e-02	ci left: 6.193999e-02	ci right 6.677349e-02	k: 2573	n:40000
TMEM132B   40000 perm   10 sec   (3822 perm/sec)   p_kst 6.432500e-02   p_cons 8.410000e-02   p_joint 3.732500e-02

Outputting figure to mutsig2_images.part000000000176/TMEM132B.12_3273_40000_0.064325_0.0841_0.037325.png
                gene_name: TMEM132B
               theta_stop: 0.100 
                    nperm: 40000 
                     p_ks: 0.064 
        ci_ks_bounds_left: 0.062 
       ci_ks_bounds_right: 0.067 
                   p_cons: 0.084 
      ci_cons_bounds_left: 0.081 
     ci_cons_bounds_right: 0.087 
                  p_joint: 0.037 
     ci_joint_bounds_left: 0.035 
    ci_joint_bounds_right: 0.039 

Current progress: 6 percent done.
TMEM131
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.237935e-02	ci left: 2.741854e-01	ci right 2.919411e-01	k: 2830	n:10000
Cons ci ratio: 3.996985e-02	ci left: 4.803561e-01	ci right 5.000496e-01	k: 4902	n:10000
KS ci ratio: 1.019010e-01	ci left: 1.222933e-01	ci right 1.355237e-01	k: 1288	n:10000
TMEM131   10000 perm   2 sec   (4128 perm/sec)   p_kst 1.288000e-01   p_cons 4.902000e-01   p_joint 2.830000e-01

Joint ci ratio: 5.784248e-02	ci left: 1.813204e-01	ci right 1.921709e-01	k: 3734	n:20000
Cons ci ratio: 2.747644e-02	ci left: 4.973955e-01	ci right 5.113032e-01	k: 10087	n:20000
KS ci ratio: 7.162618e-02	ci left: 1.255651e-01	ci right 1.349427e-01	k: 2604	n:20000
TMEM131   20000 perm   5 sec   (3787 perm/sec)   p_kst 1.302000e-01   p_cons 5.043500e-01   p_joint 1.867000e-01

Outputting figure to mutsig2_images.part000000000176/TMEM131.11_5816_20000_0.1302_0.50435_0.1867.png
                gene_name: TMEM131
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 9 percent done.
TMEM108
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.764072e-02	ci left: 1.593447e-01	ci right 1.740500e-01	k: 1666	n:10000
Cons ci ratio: 1.657249e-02	ci left: 8.412196e-01	ci right 8.553769e-01	k: 8484	n:10000
KS ci ratio: 1.541967e-01	ci left: 5.600212e-02	ci right 6.545578e-02	k: 606	n:10000
TMEM108   10000 perm   2 sec   (5369 perm/sec)   p_kst 6.060000e-02   p_cons 8.484000e-01   p_joint 1.666000e-01

Joint ci ratio: 6.780037e-02	ci left: 1.383233e-01	ci right 1.480806e-01	k: 2863	n:20000
Cons ci ratio: 1.205298e-02	ci left: 8.358576e-01	ci right 8.460431e-01	k: 16820	n:20000
KS ci ratio: 1.100038e-01	ci left: 5.640686e-02	ci right 6.302186e-02	k: 1193	n:20000
TMEM108   20000 perm   4 sec   (4857 perm/sec)   p_kst 5.965000e-02   p_cons 8.410000e-01   p_joint 1.431500e-01

Joint ci ratio: 6.237524e-02	ci left: 1.126929e-01	ci right 1.199816e-01	k: 3489	n:30000
Cons ci ratio: 9.875361e-03	ci left: 8.358693e-01	ci right 8.441980e-01	k: 25202	n:30000
KS ci ratio: 8.908016e-02	ci left: 5.792607e-02	ci right 6.335940e-02	k: 1818	n:30000
TMEM108   30000 perm   6 sec   (4625 perm/sec)   p_kst 6.060000e-02   p_cons 8.400667e-01   p_joint 1.163000e-01

Outputting figure to mutsig2_images.part000000000176/TMEM108.8_1744_30000_0.0606_0.84007_0.1163.png
                gene_name: TMEM108
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.061 
        ci_ks_bounds_left: 0.058 
       ci_ks_bounds_right: 0.063 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 11 percent done.
TMC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.767632e-03	ci left: 9.758897e-01	ci right 9.816267e-01	k: 9789	n:10000
KS ci ratio: 2.953784e-02	ci left: 6.282906e-01	ci right 6.472290e-01	k: 6378	n:10000
TMC3   10000 perm   2 sec   (4891 perm/sec)   p_kst 6.378000e-01   p_cons 9.789000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000176/TMC3.7_3391_10000_0.6378_0.9789_1.png
                gene_name: TMC3
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 14 percent done.
TMCC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.643068e-02	ci left: 5.266669e-01	ci right 5.463118e-01	k: 5365	n:10000
Cons ci ratio: 5.532926e-02	ci left: 3.248548e-01	ci right 3.434420e-01	k: 3341	n:10000
KS ci ratio: 4.212482e-02	ci left: 4.541873e-01	ci right 4.738337e-01	k: 4640	n:10000
TMCC3   10000 perm   2 sec   (5731 perm/sec)   p_kst 4.640000e-01   p_cons 3.341000e-01   p_joint 5.365000e-01

Outputting figure to mutsig2_images.part000000000176/TMCC3.7_1450_10000_0.464_0.3341_0.5365.png
                gene_name: TMCC3
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 17 percent done.
TMCC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.480242e-02	ci left: 7.051326e-01	ci right 7.229426e-01	k: 7141	n:10000
Cons ci ratio: 1.665611e-02	ci left: 8.398953e-01	ci right 8.541019e-01	k: 8471	n:10000
KS ci ratio: 3.274162e-02	ci left: 5.792819e-01	ci right 5.986662e-01	k: 5890	n:10000
TMCC1   10000 perm   2 sec   (5450 perm/sec)   p_kst 5.890000e-01   p_cons 8.471000e-01   p_joint 7.141000e-01

Outputting figure to mutsig2_images.part000000000176/TMCC1.6_1978_10000_0.589_0.8471_0.7141.png
                gene_name: TMCC1
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.72 

Current progress: 20 percent done.
TMEM132E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.855993e-01	ci left: 3.872553e-02	ci right 4.674361e-02	k: 426	n:10000
Cons ci ratio: 8.338283e-02	ci left: 1.733992e-01	ci right 1.885872e-01	k: 1809	n:10000
KS ci ratio: 3.103695e-01	ci left: 1.326304e-02	ci right 1.822489e-02	k: 156	n:10000
TMEM132E   10000 perm   2 sec   (5316 perm/sec)   p_kst 1.560000e-02   p_cons 1.809000e-01   p_joint 4.260000e-02

Joint ci ratio: 1.782866e-01	ci left: 2.149287e-02	ci right 2.574718e-02	k: 471	n:20000
Cons ci ratio: 5.858627e-02	ci left: 1.775143e-01	ci right 1.882781e-01	k: 3657	n:20000
KS ci ratio: 2.095217e-01	ci left: 1.539613e-02	ci right 1.904617e-02	k: 343	n:20000
TMEM132E   20000 perm   4 sec   (4744 perm/sec)   p_kst 1.715000e-02   p_cons 1.828500e-01   p_joint 2.355000e-02

Joint ci ratio: 1.471762e-01	ci left: 2.139762e-02	ci right 2.482892e-02	k: 692	n:30000
Cons ci ratio: 4.792659e-02	ci left: 1.779453e-01	ci right 1.867163e-01	k: 5469	n:30000
KS ci ratio: 1.695765e-01	ci left: 1.601447e-02	ci right 1.901335e-02	k: 524	n:30000
TMEM132E   30000 perm   7 sec   (4539 perm/sec)   p_kst 1.746667e-02   p_cons 1.823000e-01   p_joint 2.306667e-02

Joint ci ratio: 1.122715e-01	ci left: 2.791220e-02	ci right 3.125656e-02	k: 1182	n:40000
Cons ci ratio: 4.135786e-02	ci left: 1.795933e-01	ci right 1.872027e-01	k: 7335	n:40000
KS ci ratio: 1.512035e-01	ci left: 1.527431e-02	ci right 1.779658e-02	k: 660	n:40000
TMEM132E   40000 perm   9 sec   (4405 perm/sec)   p_kst 1.650000e-02   p_cons 1.833750e-01   p_joint 2.955000e-02

Joint ci ratio: 1.142563e-01	ci left: 2.168437e-02	ci right 2.433141e-02	k: 1149	n:50000
Cons ci ratio: 3.680745e-02	ci left: 1.814857e-01	ci right 1.883109e-01	k: 9244	n:50000
KS ci ratio: 1.317379e-01	ci left: 1.625262e-02	ci right 1.856389e-02	k: 869	n:50000
TMEM132E   50000 perm   12 sec   (4302 perm/sec)   p_kst 1.738000e-02   p_cons 1.848800e-01   p_joint 2.298000e-02

Joint ci ratio: 9.960000e-02	ci left: 2.391179e-02	ci right 2.643442e-02	k: 1509	n:60000
Cons ci ratio: 3.357264e-02	ci left: 1.820324e-01	ci right 1.882647e-01	k: 11108	n:60000
KS ci ratio: 1.191611e-01	ci left: 1.665997e-02	ci right 1.878704e-02	k: 1062	n:60000
TMEM132E   60000 perm   14 sec   (4210 perm/sec)   p_kst 1.770000e-02   p_cons 1.851333e-01   p_joint 2.515000e-02

Joint ci ratio: 8.820171e-02	ci left: 2.623111e-02	ci right 2.866541e-02	k: 1920	n:70000
Cons ci ratio: 3.035366e-02	ci left: 1.894855e-01	ci right 1.953400e-01	k: 13468	n:70000
KS ci ratio: 1.117601e-01	ci left: 1.630532e-02	ci right 1.824927e-02	k: 1208	n:70000
TMEM132E   70000 perm   17 sec   (4122 perm/sec)   p_kst 1.725714e-02   p_cons 1.924000e-01   p_joint 2.742857e-02

Joint ci ratio: 7.613355e-02	ci left: 3.085250e-02	ci right 3.330659e-02	k: 2565	n:80000
Cons ci ratio: 2.841057e-02	ci left: 1.894869e-01	ci right 1.949604e-01	k: 15377	n:80000
KS ci ratio: 1.037320e-01	ci left: 1.662701e-02	ci right 1.845822e-02	k: 1402	n:80000
TMEM132E   80000 perm   20 sec   (4048 perm/sec)   p_kst 1.752500e-02   p_cons 1.922125e-01   p_joint 3.206250e-02

Joint ci ratio: 7.945382e-02	ci left: 2.528604e-02	ci right 2.738908e-02	k: 2369	n:90000
Cons ci ratio: 2.679750e-02	ci left: 1.895085e-01	ci right 1.946669e-01	k: 17287	n:90000
KS ci ratio: 9.819203e-02	ci left: 1.654492e-02	ci right 1.826416e-02	k: 1565	n:90000
TMEM132E   90000 perm   23 sec   (3977 perm/sec)   p_kst 1.738889e-02   p_cons 1.920778e-01   p_joint 2.632222e-02

Outputting figure to mutsig2_images.part000000000176/TMEM132E.6_2995_90000_0.017389_0.19208_0.026322.png
                gene_name: TMEM132E
               theta_stop: 0.098 
                    nperm: 90000 
                     p_ks: 0.017 
        ci_ks_bounds_left: 0.017 
       ci_ks_bounds_right: 0.018 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.026 
     ci_joint_bounds_left: 0.025 
    ci_joint_bounds_right: 0.027 

Current progress: 23 percent done.
TMEM146
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.397380e-02	ci left: 5.612300e-01	ci right 5.807287e-01	k: 5710	n:10000
Cons ci ratio: 1.661754e-02	ci left: 8.405065e-01	ci right 8.546904e-01	k: 8477	n:10000
KS ci ratio: 8.085693e-02	ci left: 1.825490e-01	ci right 1.980318e-01	k: 1902	n:10000
TMEM146   10000 perm   2 sec   (5235 perm/sec)   p_kst 1.902000e-01   p_cons 8.477000e-01   p_joint 5.710000e-01

Outputting figure to mutsig2_images.part000000000176/TMEM146.6_2485_10000_0.1902_0.8477_0.571.png
                gene_name: TMEM146
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 26 percent done.
TMC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.851468e-01	ci left: 3.891660e-02	ci right 4.695241e-02	k: 428	n:10000
Cons ci ratio: 4.136457e-01	ci left: 7.063669e-03	ci right 1.083076e-02	k: 88	n:10000
KS ci ratio: 2.783297e-02	ci left: 6.554508e-01	ci right 6.740531e-01	k: 6648	n:10000
TMC5   10000 perm   2 sec   (5121 perm/sec)   p_kst 6.648000e-01   p_cons 8.800000e-03   p_joint 4.280000e-02

Joint ci ratio: 1.038086e-01	ci left: 6.308517e-02	ci right 7.004149e-02	k: 1330	n:20000
Cons ci ratio: 2.950176e-01	ci left: 7.459769e-03	ci right 1.008604e-02	k: 174	n:20000
KS ci ratio: 1.974569e-02	ci left: 6.567523e-01	ci right 6.699002e-01	k: 13267	n:20000
TMC5   20000 perm   4 sec   (4590 perm/sec)   p_kst 6.633500e-01   p_cons 8.700000e-03   p_joint 6.650000e-02

Joint ci ratio: 9.816841e-02	ci left: 4.798397e-02	ci right 5.297021e-02	k: 1513	n:30000
Cons ci ratio: 2.420484e-01	ci left: 7.617595e-03	ci right 9.745863e-03	k: 259	n:30000
KS ci ratio: 1.622186e-02	ci left: 6.552099e-01	ci right 6.659590e-01	k: 19818	n:30000
TMC5   30000 perm   7 sec   (4394 perm/sec)   p_kst 6.606000e-01   p_cons 8.633333e-03   p_joint 5.043333e-02

Joint ci ratio: 9.905703e-02	ci left: 3.580575e-02	ci right 3.956175e-02	k: 1506	n:40000
Cons ci ratio: 2.104389e-01	ci left: 7.694740e-03	ci right 9.527670e-03	k: 343	n:40000
KS ci ratio: 1.402985e-02	ci left: 6.565377e-01	ci right 6.658389e-01	k: 26448	n:40000
TMC5   40000 perm   9 sec   (4258 perm/sec)   p_kst 6.612000e-01   p_cons 8.575000e-03   p_joint 3.765000e-02

Joint ci ratio: 7.337463e-02	ci left: 5.201519e-02	ci right 5.599679e-02	k: 2699	n:50000
Cons ci ratio: 1.862664e-01	ci left: 7.961841e-03	ci right 9.615947e-03	k: 438	n:50000
KS ci ratio: 1.255377e-02	ci left: 6.568516e-01	ci right 6.651697e-01	k: 33051	n:50000
TMC5   50000 perm   12 sec   (4164 perm/sec)   p_kst 6.610200e-01   p_cons 8.760000e-03   p_joint 5.398000e-02

Joint ci ratio: 6.510180e-02	ci left: 5.512521e-02	ci right 5.885112e-02	k: 3418	n:60000
Cons ci ratio: 1.669941e-01	ci left: 8.339694e-03	ci right 9.875020e-03	k: 545	n:60000
KS ci ratio: 1.145199e-02	ci left: 6.575305e-01	ci right 6.651206e-01	k: 39680	n:60000
TMC5   60000 perm   15 sec   (4080 perm/sec)   p_kst 6.613333e-01   p_cons 9.083333e-03   p_joint 5.696667e-02

Joint ci ratio: 5.462398e-02	ci left: 6.665361e-02	ci right 7.041082e-02	k: 4796	n:70000
Cons ci ratio: 1.541191e-01	ci left: 8.451028e-03	ci right 9.875819e-03	k: 640	n:70000
KS ci ratio: 1.060396e-02	ci left: 6.577516e-01	ci right 6.647779e-01	k: 46289	n:70000
TMC5   70000 perm   18 sec   (3995 perm/sec)   p_kst 6.612714e-01   p_cons 9.142857e-03   p_joint 6.851429e-02

Joint ci ratio: 5.207297e-02	ci left: 6.442487e-02	ci right 6.788168e-02	k: 5291	n:80000
Cons ci ratio: 1.445213e-01	ci left: 8.453581e-03	ci right 9.782384e-03	k: 728	n:80000
KS ci ratio: 9.932046e-03	ci left: 6.573945e-01	ci right 6.639688e-01	k: 52855	n:80000
TMC5   80000 perm   20 sec   (3923 perm/sec)   p_kst 6.606875e-01   p_cons 9.100000e-03   p_joint 6.613750e-02

Joint ci ratio: 4.902220e-02	ci left: 6.470491e-02	ci right 6.796756e-02	k: 5969	n:90000
Cons ci ratio: 1.360991e-01	ci left: 8.511391e-03	ci right 9.764998e-03	k: 821	n:90000
KS ci ratio: 9.358203e-03	ci left: 6.578633e-01	ci right 6.640597e-01	k: 59487	n:90000
TMC5   90000 perm   23 sec   (3857 perm/sec)   p_kst 6.609667e-01   p_cons 9.122222e-03   p_joint 6.632222e-02

Joint ci ratio: 4.852109e-02	ci left: 5.978143e-02	ci right 6.276408e-02	k: 6126	n:100000
Cons ci ratio: 1.287834e-01	ci left: 8.588481e-03	ci right 9.780248e-03	k: 917	n:100000
KS ci ratio: 8.872763e-03	ci left: 6.582869e-01	ci right 6.641637e-01	k: 66123	n:100000
TMC5   100000 perm   26 sec   (3794 perm/sec)   p_kst 6.612300e-01   p_cons 9.170000e-03   p_joint 6.126000e-02

Joint ci ratio: 5.969106e-02	ci left: 3.659999e-02	ci right 3.886083e-02	k: 4149	n:110000
Cons ci ratio: 1.227167e-01	ci left: 8.626588e-03	ci right 9.763152e-03	k: 1010	n:110000
KS ci ratio: 8.172825e-03	ci left: 6.737445e-01	ci right 6.792825e-01	k: 74417	n:110000
TMC5   110000 perm   30 sec   (3699 perm/sec)   p_kst 6.765182e-01   p_cons 9.181818e-03   p_joint 3.771818e-02

Joint ci ratio: 4.730936e-02	ci left: 5.283495e-02	ci right 5.540332e-02	k: 6493	n:120000
Cons ci ratio: 1.080044e-01	ci left: 1.027153e-02	ci right 1.145228e-02	k: 1302	n:120000
KS ci ratio: 7.824468e-03	ci left: 6.738865e-01	ci right 6.791883e-01	k: 81185	n:120000
TMC5   120000 perm   33 sec   (3646 perm/sec)   p_kst 6.765417e-01   p_cons 1.085000e-02   p_joint 5.410833e-02

Joint ci ratio: 4.620877e-02	ci left: 5.124049e-02	ci right 5.367183e-02	k: 6818	n:130000
Cons ci ratio: 1.040877e-01	ci left: 1.023024e-02	ci right 1.136098e-02	k: 1402	n:130000
KS ci ratio: 7.519678e-03	ci left: 6.738644e-01	ci right 6.789585e-01	k: 87934	n:130000
TMC5   130000 perm   36 sec   (3594 perm/sec)   p_kst 6.764154e-01   p_cons 1.078462e-02   p_joint 5.244615e-02

Joint ci ratio: 4.596446e-02	ci left: 4.824944e-02	ci right 5.052641e-02	k: 6913	n:140000
Cons ci ratio: 1.007718e-01	ci left: 1.015371e-02	ci right 1.123813e-02	k: 1496	n:140000
KS ci ratio: 7.241790e-03	ci left: 6.742212e-01	ci right 6.791286e-01	k: 94735	n:140000
TMC5   140000 perm   40 sec   (3541 perm/sec)   p_kst 6.766786e-01   p_cons 1.068571e-02   p_joint 4.937857e-02

Joint ci ratio: 4.480129e-02	ci left: 4.747105e-02	ci right 4.965311e-02	k: 7283	n:150000
Cons ci ratio: 9.726079e-02	ci left: 1.019198e-02	ci right 1.124039e-02	k: 1606	n:150000
KS ci ratio: 7.000051e-03	ci left: 6.740657e-01	ci right 6.788074e-01	k: 101466	n:150000
TMC5   150000 perm   43 sec   (3492 perm/sec)   p_kst 6.764400e-01   p_cons 1.070667e-02   p_joint 4.855333e-02

Outputting figure to mutsig2_images.part000000000176/TMC5.5_3415_150000_0.67644_0.010707_0.048553.png
                gene_name: TMC5
               theta_stop: 0.097 
                    nperm: 150000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.011 
      ci_cons_bounds_left: 0.010 
     ci_cons_bounds_right: 0.011 
                  p_joint: 0.049 
     ci_joint_bounds_left: 0.047 
    ci_joint_bounds_right: 0.050 

Current progress: 29 percent done.
TMEM117
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.172698e-02	ci left: 3.552563e-01	ci right 3.742225e-01	k: 3647	n:10000
Cons ci ratio: 1.214091e-01	ci left: 8.864084e-02	ci right 1.001967e-01	k: 943	n:10000
KS ci ratio: 2.566713e-02	ci left: 6.908102e-01	ci right 7.088733e-01	k: 6999	n:10000
TMEM117   10000 perm   2 sec   (5420 perm/sec)   p_kst 6.999000e-01   p_cons 9.430000e-02   p_joint 3.647000e-01

Joint ci ratio: 3.615786e-02	ci left: 3.634027e-01	ci right 3.768351e-01	k: 7402	n:20000
Cons ci ratio: 8.552611e-02	ci left: 9.097040e-02	ci right 9.914776e-02	k: 1900	n:20000
KS ci ratio: 1.822985e-02	ci left: 6.916338e-01	ci right 7.044086e-01	k: 13961	n:20000
TMEM117   20000 perm   4 sec   (4924 perm/sec)   p_kst 6.980500e-01   p_cons 9.500000e-02   p_joint 3.701000e-01

Outputting figure to mutsig2_images.part000000000176/TMEM117.5_1573_20000_0.69805_0.095_0.3701.png
                gene_name: TMEM117
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.095 
      ci_cons_bounds_left: 0.091 
     ci_cons_bounds_right: 0.099 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 31 percent done.
TMC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.022202e-02	ci left: 9.314385e-01	ci right 9.411054e-01	k: 9364	n:10000
KS ci ratio: 1.673957e-02	ci left: 8.385712e-01	ci right 8.528268e-01	k: 8458	n:10000
TMC4   10000 perm   2 sec   (6181 perm/sec)   p_kst 8.458000e-01   p_cons 9.364000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000176/TMC4.4_2199_10000_0.8458_0.9364_1.png
                gene_name: TMC4
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 34 percent done.
TMC7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.241134e-01	ci left: 8.504395e-02	ci right 9.639578e-02	k: 906	n:10000
Cons ci ratio: 1.734486e-02	ci left: 8.289004e-01	ci right 8.435032e-01	k: 8363	n:10000
KS ci ratio: 2.313764e-01	ci left: 2.466595e-02	ci right 3.121293e-02	k: 278	n:10000
TMC7   10000 perm   2 sec   (5395 perm/sec)   p_kst 2.780000e-02   p_cons 8.363000e-01   p_joint 9.060000e-02

Joint ci ratio: 7.642427e-02	ci left: 1.117897e-01	ci right 1.207222e-01	k: 2324	n:20000
Cons ci ratio: 1.254734e-02	ci left: 8.246706e-01	ci right 8.351333e-01	k: 16599	n:20000
KS ci ratio: 1.593999e-01	ci left: 2.700636e-02	ci right 3.173179e-02	k: 586	n:20000
TMC7   20000 perm   4 sec   (4917 perm/sec)   p_kst 2.930000e-02   p_cons 8.299500e-01   p_joint 1.162000e-01

Joint ci ratio: 6.824995e-02	ci left: 9.567548e-02	ci right 1.024691e-01	k: 2971	n:30000
Cons ci ratio: 1.031057e-02	ci left: 8.238159e-01	ci right 8.323871e-01	k: 24844	n:30000
KS ci ratio: 1.252178e-01	ci left: 2.964928e-02	ci right 3.364210e-02	k: 948	n:30000
TMC7   30000 perm   6 sec   (4776 perm/sec)   p_kst 3.160000e-02   p_cons 8.281333e-01   p_joint 9.903333e-02

Joint ci ratio: 5.427200e-02	ci left: 1.122350e-01	ci right 1.185209e-01	k: 4614	n:40000
Cons ci ratio: 8.934908e-03	ci left: 8.242150e-01	ci right 8.316373e-01	k: 33118	n:40000
KS ci ratio: 1.097630e-01	ci left: 2.920146e-02	ci right 3.261709e-02	k: 1235	n:40000
TMC7   40000 perm   9 sec   (4669 perm/sec)   p_kst 3.087500e-02   p_cons 8.279500e-01   p_joint 1.153500e-01

Joint ci ratio: 4.769024e-02	ci left: 1.161939e-01	ci right 1.218904e-01	k: 5951	n:50000
Cons ci ratio: 8.002529e-03	ci left: 8.242198e-01	ci right 8.308621e-01	k: 41378	n:50000
KS ci ratio: 1.011169e-01	ci left: 2.770259e-02	ci right 3.067240e-02	k: 1458	n:50000
TMC7   50000 perm   11 sec   (4568 perm/sec)   p_kst 2.916000e-02   p_cons 8.275600e-01   p_joint 1.190200e-01

Joint ci ratio: 5.690167e-02	ci left: 7.121047e-02	ci right 7.539758e-02	k: 4397	n:60000
Cons ci ratio: 7.317879e-03	ci left: 8.240164e-01	ci right 8.300852e-01	k: 49624	n:60000
KS ci ratio: 9.417375e-02	ci left: 2.674336e-02	ci right 2.940256e-02	k: 1683	n:60000
TMC7   60000 perm   13 sec   (4486 perm/sec)   p_kst 2.805000e-02   p_cons 8.270667e-01   p_joint 7.328333e-02

Outputting figure to mutsig2_images.part000000000176/TMC7.4_2236_60000_0.02805_0.82707_0.073283.png
                gene_name: TMC7
               theta_stop: 0.094 
                    nperm: 60000 
                     p_ks: 0.028 
        ci_ks_bounds_left: 0.027 
       ci_ks_bounds_right: 0.029 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.073 
     ci_joint_bounds_left: 0.071 
    ci_joint_bounds_right: 0.075 

Current progress: 37 percent done.
TMEM161B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.004187e-02	ci left: 4.794567e-01	ci right 4.991495e-01	k: 4893	n:10000
Cons ci ratio: 5.041374e-02	ci left: 3.671899e-01	ci right 3.862820e-01	k: 3767	n:10000
KS ci ratio: 4.491338e-02	ci left: 4.225613e-01	ci right 4.420781e-01	k: 4323	n:10000
TMEM161B   10000 perm   2 sec   (5932 perm/sec)   p_kst 4.323000e-01   p_cons 3.767000e-01   p_joint 4.893000e-01

Outputting figure to mutsig2_images.part000000000176/TMEM161B.4_1512_10000_0.4323_0.3767_0.4893.png
                gene_name: TMEM161B
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 40 percent done.
TMC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.415983e-02	ci left: 7.158309e-01	ci right 7.334380e-01	k: 7247	n:10000
Cons ci ratio: 4.323372e-02	ci left: 4.413126e-01	ci right 4.609159e-01	k: 4511	n:10000
KS ci ratio: 3.505392e-02	ci left: 5.457959e-01	ci right 5.653717e-01	k: 5556	n:10000
TMC2   10000 perm   2 sec   (5693 perm/sec)   p_kst 5.556000e-01   p_cons 4.511000e-01   p_joint 7.247000e-01

Outputting figure to mutsig2_images.part000000000176/TMC2.3_2801_10000_0.5556_0.4511_0.7247.png
                gene_name: TMC2
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 43 percent done.
TMCO7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.015953e-02	ci left: 2.294830e-01	ci right 2.462699e-01	k: 2378	n:10000
Cons ci ratio: 1.057501e-01	ci left: 1.143760e-01	ci right 1.272458e-01	k: 1207	n:10000
KS ci ratio: 4.027488e-02	ci left: 4.765590e-01	ci right 4.962490e-01	k: 4864	n:10000
TMCO7   10000 perm   2 sec   (5314 perm/sec)   p_kst 4.864000e-01   p_cons 1.207000e-01   p_joint 2.378000e-01

Joint ci ratio: 4.775491e-02	ci left: 2.459447e-01	ci right 2.580274e-01	k: 5039	n:20000
Cons ci ratio: 7.787170e-02	ci left: 1.080541e-01	ci right 1.168589e-01	k: 2248	n:20000
KS ci ratio: 2.855220e-02	ci left: 4.782011e-01	ci right 4.921032e-01	k: 9703	n:20000
TMCO7   20000 perm   4 sec   (4772 perm/sec)   p_kst 4.851500e-01   p_cons 1.124000e-01   p_joint 2.519500e-01

Outputting figure to mutsig2_images.part000000000176/TMCO7.3_3357_20000_0.48515_0.1124_0.25195.png
                gene_name: TMCO7
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 46 percent done.
TMEM132A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.237781e-02	ci left: 5.847001e-01	ci right 6.040449e-01	k: 5944	n:10000
Cons ci ratio: 7.457047e-02	ci left: 2.083625e-01	ci right 2.246029e-01	k: 2164	n:10000
KS ci ratio: 3.629906e-02	ci left: 5.284690e-01	ci right 5.481087e-01	k: 5383	n:10000
TMEM132A   10000 perm   2 sec   (5444 perm/sec)   p_kst 5.383000e-01   p_cons 2.164000e-01   p_joint 5.944000e-01

Outputting figure to mutsig2_images.part000000000176/TMEM132A.3_3119_10000_0.5383_0.2164_0.5944.png
                gene_name: TMEM132A
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 49 percent done.
TMEM135
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.385609e-01	ci left: 6.894400e-02	ci right 7.930573e-02	k: 740	n:10000
Cons ci ratio: 9.069448e-02	ci left: 1.502147e-01	ci right 1.645855e-01	k: 1573	n:10000
KS ci ratio: 9.651276e-02	ci left: 1.347239e-01	ci right 1.484856e-01	k: 1415	n:10000
TMEM135   10000 perm   2 sec   (6231 perm/sec)   p_kst 1.415000e-01   p_cons 1.573000e-01   p_joint 7.400000e-02

Joint ci ratio: 8.015886e-02	ci left: 1.025028e-01	ci right 1.111119e-01	k: 2135	n:20000
Cons ci ratio: 6.086913e-02	ci left: 1.664965e-01	ci right 1.769991e-01	k: 3434	n:20000
KS ci ratio: 6.655758e-02	ci left: 1.428586e-01	ci right 1.527441e-01	k: 2955	n:20000
TMEM135   20000 perm   4 sec   (5599 perm/sec)   p_kst 1.477500e-01   p_cons 1.717000e-01   p_joint 1.067500e-01

Outputting figure to mutsig2_images.part000000000176/TMEM135.3_1437_20000_0.14775_0.1717_0.10675.png
                gene_name: TMEM135
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 51 percent done.
TMEM145
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.503491e-02	ci left: 8.650892e-01	ci right 8.782934e-01	k: 8718	n:10000
Cons ci ratio: 3.420315e-02	ci left: 5.579219e-01	ci right 5.774387e-01	k: 5677	n:10000
KS ci ratio: 2.475992e-02	ci left: 7.058389e-01	ci right 7.236358e-01	k: 7148	n:10000
TMEM145   10000 perm   2 sec   (6078 perm/sec)   p_kst 7.148000e-01   p_cons 5.677000e-01   p_joint 8.718000e-01

Outputting figure to mutsig2_images.part000000000176/TMEM145.3_1542_10000_0.7148_0.5677_0.8718.png
                gene_name: TMEM145
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 54 percent done.
TMEM161A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.080238e-02	ci left: 4.700652e-01	ci right 4.897466e-01	k: 4799	n:10000
KS ci ratio: 2.172038e-02	ci left: 7.566645e-01	ci right 7.733809e-01	k: 7651	n:10000
TMEM161A   10000 perm   2 sec   (5997 perm/sec)   p_kst 7.651000e-01   p_cons 4.799000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000176/TMEM161A.3_1488_10000_0.7651_0.4799_1.png
                gene_name: TMEM161A
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 57 percent done.
TMC6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.226699e-02	ci left: 3.504847e-01	ci right 3.693970e-01	k: 3599	n:10000
Cons ci ratio: 5.864716e-02	ci left: 2.996526e-01	ci right 3.178589e-01	k: 3087	n:10000
KS ci ratio: 2.341025e-02	ci left: 7.283538e-01	ci right 7.457079e-01	k: 7371	n:10000
TMC6   10000 perm   2 sec   (6032 perm/sec)   p_kst 7.371000e-01   p_cons 3.087000e-01   p_joint 3.599000e-01

Outputting figure to mutsig2_images.part000000000176/TMC6.2_2494_10000_0.7371_0.3087_0.3599.png
                gene_name: TMC6
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 60 percent done.
TMCO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.904550e-02	ci left: 4.920509e-01	ci right 5.117480e-01	k: 5019	n:10000
Cons ci ratio: 2.998038e-02	ci left: 6.213549e-01	ci right 6.403688e-01	k: 6309	n:10000
KS ci ratio: 4.730797e-02	ci left: 3.973494e-01	ci right 4.167048e-01	k: 4070	n:10000
TMCO1   10000 perm   1 sec   (7038 perm/sec)   p_kst 4.070000e-01   p_cons 6.309000e-01   p_joint 5.019000e-01

Outputting figure to mutsig2_images.part000000000176/TMCO1.2_595_10000_0.407_0.6309_0.5019.png
                gene_name: TMCO1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 63 percent done.
TMCO4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.134096e-03	ci left: 9.547186e-01	ci right 9.626113e-01	k: 9588	n:10000
Cons ci ratio: 6.666854e-02	ci left: 2.482593e-01	ci right 2.654825e-01	k: 2568	n:10000
KS ci ratio: 2.270415e-02	ci left: 7.401779e-01	ci right 7.572770e-01	k: 7488	n:10000
TMCO4   10000 perm   2 sec   (6146 perm/sec)   p_kst 7.488000e-01   p_cons 2.568000e-01   p_joint 9.588000e-01

Outputting figure to mutsig2_images.part000000000176/TMCO4.2_1957_10000_0.7488_0.2568_0.9588.png
                gene_name: TMCO4
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 66 percent done.
TMCO5A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.971065e-02	ci left: 6.255764e-01	ci right 6.445448e-01	k: 6351	n:10000
Cons ci ratio: 3.786852e-02	ci left: 5.073522e-01	ci right 5.270378e-01	k: 5172	n:10000
KS ci ratio: 5.811568e-02	ci left: 3.035202e-01	ci right 3.217891e-01	k: 3126	n:10000
TMCO5A   10000 perm   1 sec   (6789 perm/sec)   p_kst 3.126000e-01   p_cons 5.172000e-01   p_joint 6.351000e-01

Outputting figure to mutsig2_images.part000000000176/TMCO5A.2_907_10000_0.3126_0.5172_0.6351.png
                gene_name: TMCO5A
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.64 

Current progress: 69 percent done.
TMED3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.515839e-01	ci left: 2.071417e-02	ci right 2.676765e-02	k: 236	n:10000
Cons ci ratio: 6.529986e-02	ci left: 2.561716e-01	ci right 2.735656e-01	k: 2648	n:10000
KS ci ratio: 2.870972e-01	ci left: 1.567108e-02	ci right 2.101476e-02	k: 182	n:10000
TMED3   10000 perm   1 sec   (6756 perm/sec)   p_kst 1.820000e-02   p_cons 2.648000e-01   p_joint 2.360000e-02

Joint ci ratio: 1.986352e-01	ci left: 1.720062e-02	ci right 2.104099e-02	k: 381	n:20000
Cons ci ratio: 4.628719e-02	ci left: 2.578014e-01	ci right 2.700673e-01	k: 5278	n:20000
KS ci ratio: 2.085981e-01	ci left: 1.553840e-02	ci right 1.920385e-02	k: 346	n:20000
TMED3   20000 perm   3 sec   (5963 perm/sec)   p_kst 1.730000e-02   p_cons 2.639000e-01   p_joint 1.905000e-02

Joint ci ratio: 1.484976e-01	ci left: 2.101211e-02	ci right 2.441452e-02	k: 680	n:30000
Cons ci ratio: 3.773354e-02	ci left: 2.595484e-01	ci right 2.695639e-01	k: 7936	n:30000
KS ci ratio: 1.665351e-01	ci left: 1.662158e-02	ci right 1.967275e-02	k: 543	n:30000
TMED3   30000 perm   5 sec   (5673 perm/sec)   p_kst 1.810000e-02   p_cons 2.645333e-01   p_joint 2.266667e-02

Joint ci ratio: 9.755333e-02	ci left: 3.690411e-02	ci right 4.071322e-02	k: 1551	n:40000
Cons ci ratio: 3.275961e-02	ci left: 2.592623e-01	ci right 2.679221e-01	k: 10543	n:40000
KS ci ratio: 1.469650e-01	ci left: 1.618942e-02	ci right 1.878130e-02	k: 698	n:40000
TMED3   40000 perm   7 sec   (5478 perm/sec)   p_kst 1.745000e-02   p_cons 2.635750e-01   p_joint 3.877500e-02

Joint ci ratio: 1.161839e-01	ci left: 2.096525e-02	ci right 2.357063e-02	k: 1112	n:50000
Cons ci ratio: 2.926793e-02	ci left: 2.601600e-01	ci right 2.679074e-01	k: 13201	n:50000
KS ci ratio: 1.302973e-01	ci left: 1.662037e-02	ci right 1.895610e-02	k: 888	n:50000
TMED3   50000 perm   9 sec   (5322 perm/sec)   p_kst 1.776000e-02   p_cons 2.640200e-01   p_joint 2.224000e-02

Joint ci ratio: 7.947485e-02	ci left: 3.741590e-02	ci right 4.052890e-02	k: 2337	n:60000
Cons ci ratio: 2.669199e-02	ci left: 2.608744e-01	ci right 2.679484e-01	k: 15864	n:60000
KS ci ratio: 1.190471e-01	ci left: 1.669233e-02	ci right 1.882135e-02	k: 1064	n:60000
TMED3   60000 perm   12 sec   (5183 perm/sec)   p_kst 1.773333e-02   p_cons 2.644000e-01   p_joint 3.895000e-02

Joint ci ratio: 7.398497e-02	ci left: 3.712882e-02	ci right 3.999531e-02	k: 2698	n:70000
Cons ci ratio: 2.470035e-02	ci left: 2.613206e-01	ci right 2.678703e-01	k: 18521	n:70000
KS ci ratio: 1.118543e-01	ci left: 1.627754e-02	ci right 1.821992e-02	k: 1206	n:70000
TMED3   70000 perm   14 sec   (5059 perm/sec)   p_kst 1.722857e-02   p_cons 2.645857e-01   p_joint 3.854286e-02

Joint ci ratio: 6.909690e-02	ci left: 3.733707e-02	ci right 4.002152e-02	k: 3093	n:80000
Cons ci ratio: 2.315042e-02	ci left: 2.607735e-01	ci right 2.668937e-01	k: 21106	n:80000
KS ci ratio: 1.040343e-01	ci left: 1.652956e-02	ci right 1.835567e-02	k: 1394	n:80000
TMED3   80000 perm   16 sec   (4948 perm/sec)   p_kst 1.742500e-02   p_cons 2.638250e-01   p_joint 3.866250e-02

Joint ci ratio: 5.783393e-02	ci left: 4.716034e-02	ci right 4.997996e-02	k: 4370	n:90000
Cons ci ratio: 2.185292e-02	ci left: 2.604801e-01	ci right 2.662463e-01	k: 23702	n:90000
KS ci ratio: 9.816014e-02	ci left: 1.655577e-02	ci right 1.827554e-02	k: 1566	n:90000
TMED3   90000 perm   19 sec   (4846 perm/sec)   p_kst 1.740000e-02   p_cons 2.633556e-01   p_joint 4.855556e-02

Outputting figure to mutsig2_images.part000000000176/TMED3.2_666_90000_0.0174_0.26336_0.048556.png
                gene_name: TMED3
               theta_stop: 0.098 
                    nperm: 90000 
                     p_ks: 0.017 
        ci_ks_bounds_left: 0.017 
       ci_ks_bounds_right: 0.018 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.049 
     ci_joint_bounds_left: 0.047 
    ci_joint_bounds_right: 0.050 

Current progress: 71 percent done.
TMED4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.554179e-03	ci left: 9.393127e-01	ci right 9.484265e-01	k: 9440	n:10000
KS ci ratio: 1.822407e-02	ci left: 8.146643e-01	ci right 8.297475e-01	k: 8223	n:10000
TMED4   10000 perm   1 sec   (6839 perm/sec)   p_kst 8.223000e-01   p_cons 9.440000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000176/TMED4.2_704_10000_0.8223_0.944_1.png
                gene_name: TMED4
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 74 percent done.
TMED8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.360009e-01	ci left: 7.146123e-02	ci right 8.198693e-02	k: 766	n:10000
KS ci ratio: 2.251712e-02	ci left: 7.433121e-01	ci right 7.603410e-01	k: 7519	n:10000
TMED8   10000 perm   1 sec   (6713 perm/sec)   p_kst 7.519000e-01   p_cons 7.660000e-02   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 9.559662e-02	ci left: 7.383094e-02	ci right 8.129243e-02	k: 1550	n:20000
KS ci ratio: 1.601600e-02	ci left: 7.436354e-01	ci right 7.556919e-01	k: 14994	n:20000
TMED8   20000 perm   3 sec   (5901 perm/sec)   p_kst 7.497000e-01   p_cons 7.750000e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000176/TMED8.2_1001_20000_0.7497_0.0775_1.png
                gene_name: TMED8
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.077 
      ci_cons_bounds_left: 0.074 
     ci_cons_bounds_right: 0.081 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
TMEM100
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.118695e-02	ci left: 2.820102e-01	ci right 2.999117e-01	k: 2909	n:10000
KS ci ratio: 4.000184e-02	ci left: 4.799564e-01	ci right 4.996496e-01	k: 4898	n:10000
TMEM100   10000 perm   1 sec   (6959 perm/sec)   p_kst 4.898000e-01   p_cons 2.909000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000176/TMEM100.2_409_10000_0.4898_0.2909_1.png
                gene_name: TMEM100
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
TMEM102
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.474272e-02	ci left: 5.502047e-01	ci right 5.697603e-01	k: 5600	n:10000
KS ci ratio: 3.392529e-02	ci left: 5.619317e-01	ci right 5.814265e-01	k: 5717	n:10000
TMEM102   10000 perm   2 sec   (6336 perm/sec)   p_kst 5.717000e-01   p_cons 5.600000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000176/TMEM102.2_1535_10000_0.5717_0.56_1.png
                gene_name: TMEM102
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
TMEM107
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.423087e-02	ci left: 8.771523e-01	ci right 8.898233e-01	k: 8836	n:10000
Cons ci ratio: 6.560300e-02	ci left: 2.543910e-01	ci right 2.717472e-01	k: 2630	n:10000
KS ci ratio: 4.584033e-02	ci left: 4.125930e-01	ci right 4.320522e-01	k: 4223	n:10000
TMEM107   10000 perm   1 sec   (7076 perm/sec)   p_kst 4.223000e-01   p_cons 2.630000e-01   p_joint 8.836000e-01

Outputting figure to mutsig2_images.part000000000176/TMEM107.2_461_10000_0.4223_0.263_0.8836.png
                gene_name: TMEM107
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 86 percent done.
TMEM140
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.464158e-02	ci left: 1.690728e-01	ci right 1.841161e-01	k: 1765	n:10000
Cons ci ratio: 1.259546e-01	ci left: 8.271234e-02	ci right 9.392883e-02	k: 882	n:10000
KS ci ratio: 6.315665e-02	ci left: 2.692348e-01	ci right 2.868947e-01	k: 2780	n:10000
TMEM140   10000 perm   1 sec   (7216 perm/sec)   p_kst 2.780000e-01   p_cons 8.820000e-02   p_joint 1.765000e-01

Joint ci ratio: 4.214493e-02	ci left: 2.955417e-01	ci right 3.083159e-01	k: 6038	n:20000
Cons ci ratio: 8.838073e-02	ci left: 8.557862e-02	ci right 9.354118e-02	k: 1790	n:20000
KS ci ratio: 4.421255e-02	ci left: 2.758702e-01	ci right 2.883932e-01	k: 5642	n:20000
TMEM140   20000 perm   3 sec   (6280 perm/sec)   p_kst 2.821000e-01   p_cons 8.950000e-02   p_joint 3.019000e-01

Outputting figure to mutsig2_images.part000000000176/TMEM140.2_562_20000_0.2821_0.0895_0.3019.png
                gene_name: TMEM140
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.089 
      ci_cons_bounds_left: 0.086 
     ci_cons_bounds_right: 0.094 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 89 percent done.
TMEM144
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.708012e-02	ci left: 5.178584e-01	ci right 5.375255e-01	k: 5277	n:10000
KS ci ratio: 4.527199e-02	ci left: 4.186732e-01	ci right 4.381685e-01	k: 4284	n:10000
TMEM144   10000 perm   2 sec   (6634 perm/sec)   p_kst 4.284000e-01   p_cons 5.277000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000176/TMEM144.2_1082_10000_0.4284_0.5277_1.png
                gene_name: TMEM144
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
TMEM149
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.623630e-02	ci left: 8.465185e-01	ci right 8.604749e-01	k: 8536	n:10000
Cons ci ratio: 2.084912e-02	ci left: 7.712435e-01	ci right 7.875934e-01	k: 7795	n:10000
KS ci ratio: 3.931972e-02	ci left: 4.885519e-01	ci right 5.082490e-01	k: 4984	n:10000
TMEM149   10000 perm   2 sec   (6517 perm/sec)   p_kst 4.984000e-01   p_cons 7.795000e-01   p_joint 8.536000e-01

Outputting figure to mutsig2_images.part000000000176/TMEM149.2_1084_10000_0.4984_0.7795_0.8536.png
                gene_name: TMEM149
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 94 percent done.
TMEM155
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.751082e-03	ci left: 9.370311e-01	ci right 9.463095e-01	k: 9418	n:10000
KS ci ratio: 3.681323e-02	ci left: 5.214615e-01	ci right 5.411203e-01	k: 5313	n:10000
TMEM155   10000 perm   1 sec   (7406 perm/sec)   p_kst 5.313000e-01   p_cons 9.418000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000176/TMEM155.2_405_10000_0.5313_0.9418_1.png
                gene_name: TMEM155
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
TMEM163
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.421137e-01	ci left: 6.565505e-02	ci right 7.579675e-02	k: 706	n:10000
Cons ci ratio: 1.478182e-01	ci left: 6.082454e-02	ci right 7.063030e-02	k: 656	n:10000
KS ci ratio: 6.437385e-02	ci left: 2.617124e-01	ci right 2.792215e-01	k: 2704	n:10000
TMEM163   10000 perm   1 sec   (6991 perm/sec)   p_kst 2.704000e-01   p_cons 6.560000e-02   p_joint 7.060000e-02

Joint ci ratio: 9.928795e-02	ci left: 6.869925e-02	ci right 7.592569e-02	k: 1445	n:20000
Cons ci ratio: 1.048247e-01	ci left: 6.191444e-02	ci right 6.881258e-02	k: 1306	n:20000
KS ci ratio: 4.596184e-02	ci left: 2.605307e-01	ci right 2.728372e-01	k: 5333	n:20000
TMEM163   20000 perm   3 sec   (6129 perm/sec)   p_kst 2.666500e-01   p_cons 6.530000e-02   p_joint 7.225000e-02

Joint ci ratio: 9.579296e-02	ci left: 5.032870e-02	ci right 5.542499e-02	k: 1585	n:30000
Cons ci ratio: 8.647785e-02	ci left: 6.132138e-02	ci right 6.689673e-02	k: 1922	n:30000
KS ci ratio: 3.766256e-02	ci left: 2.602772e-01	ci right 2.703016e-01	k: 7958	n:30000
TMEM163   30000 perm   5 sec   (5803 perm/sec)   p_kst 2.652667e-01   p_cons 6.406667e-02   p_joint 5.283333e-02

Outputting figure to mutsig2_images.part000000000176/TMEM163.2_902_30000_0.26527_0.064067_0.052833.png
                gene_name: TMEM163
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.064 
      ci_cons_bounds_left: 0.061 
     ci_cons_bounds_right: 0.067 
                  p_joint: 0.053 
     ci_joint_bounds_left: 0.050 
    ci_joint_bounds_right: 0.055 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000176
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 176 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1644>
Subject: Job 8004632: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1644>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000177> was used as the working directory.
Started at Sun Nov 11 15:22:27 2012
Results reported at Sun Nov 11 15:38:09 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000177.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000177.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 177  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000177.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    994.41 sec.
    Max Memory :      4828 MB
    Max Swap   :      7103 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
177
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 177
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 177: processing genes 15924 - 16013
Calculating significance of each gene.
Using projection method.
15924	TMEM164	1.395734e-01
15925	TMEM165	1
15926	TMEM167A	1
15927	TMEM167B	1
15928	TMEM168	2.500302e-01
15929	TMEM169	1
15930	TMEM17	5.764399e-02
15931	TMEM170A	1
15932	TMEM170B	2.699896e-03
15933	TMEM171	6.525868e-01
15934	TMEM173	5.352414e-01
15935	TMEM174	2.491101e-01
15936	TMEM175	4.907350e-01
15937	TMEM176A	1.492357e-01
15938	TMEM176B	1.102909e-01
15939	TMEM177	2.897610e-01
15940	TMEM178	2.256158e-01
15941	TMEM179	3.594011e-01
15942	TMEM179B	1
15943	TMEM18	1.059405e-01
15944	TMEM180	1
15945	TMEM181	1.228363e-01
15946	TMEM182	3.693614e-01
15947	TMEM183A	1
15948	TMEM183B	1
15949	TMEM184A	1.491400e-01
15950	TMEM184B	7.169942e-01
15951	TMEM184C	6.539683e-01
15952	TMEM185A	4.643745e-03
15953	TMEM186	2.023705e-01
15954	TMEM187	1
15955	TMEM188	1
15956	TMEM189	1
15957	TMEM189-UBE2V1	5.172700e-01
15958	TMEM19	6.851527e-01
15959	TMEM190	3.154070e-01
15960	TMEM192	6.593280e-01
15961	TMEM194A	1
15962	TMEM195	1.612394e-03
15963	TMEM196	1
15964	TMEM198	1
15965	TMEM199	1
15966	TMEM2	9.159518e-01
15967	TMEM20	1
15968	TMEM200A	5.435782e-01
15969	TMEM200B	1
15970	TMEM200C	3.649846e-02
15971	TMEM201	6.297001e-01
15972	TMEM202	1.438103e-01
15973	TMEM203	1
15974	TMEM204	4.863695e-01
15975	TMEM205	2.677492e-01
15976	TMEM206	7.708337e-01
15977	TMEM207	3.498585e-01
15978	TMEM208	3.925427e-01
15979	TMEM209	8.477358e-01
15980	TMEM211	1
15981	TMEM213	1
15982	TMEM214	8.881970e-01
15983	TMEM215	1
15984	TMEM216	2.350539e-01
15985	TMEM217	1
15986	TMEM218	1
15987	TMEM219	1
15988	TMEM22	6.544713e-01
15989	TMEM220	1
15990	TMEM222	3.106387e-01
15991	TMEM223	1
15992	TMEM225	1.841764e-02
15993	TMEM229B	4.071406e-01
15994	TMEM231	1
15995	TMEM25	4.104981e-01
15996	TMEM26	3.712576e-02
15997	TMEM27	8.581743e-02
15998	TMEM30A	1
15999	TMEM30B	1
16000/18094 16000	TMEM31	1
16001	TMEM33	1
16002	TMEM35	1
16003	TMEM37	1.823637e-01
16004	TMEM38A	1.853940e-01
16005	TMEM38B	2.545461e-01
16006	TMEM39A	5.876292e-01
16007	TMEM39B	1
16008	TMEM40	1.701200e-01
16009	TMEM41A	5.121213e-01
16010	TMEM41B	1
16011	TMEM42	1
16012	TMEM43	8.422325e-01
16013	TMEM44	1
Done

Running MutSig 2:
Scatter job 177: processing genes 15924 - 16013
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
TMEM195
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.546088e-02	ci left: 2.044183e-01	ci right 2.205496e-01	k: 2124	n:10000
Cons ci ratio: 1.518144e-01	ci left: 5.773721e-02	ci right 6.731959e-02	k: 624	n:10000
KS ci ratio: 3.382843e-02	ci left: 5.633354e-01	ci right 5.828220e-01	k: 5731	n:10000
TMEM195   10000 perm   2 sec   (5235 perm/sec)   p_kst 5.731000e-01   p_cons 6.240000e-02   p_joint 2.124000e-01

Joint ci ratio: 6.419219e-02	ci left: 1.520819e-01	ci right 1.622180e-01	k: 3142	n:20000
Cons ci ratio: 1.090837e-01	ci left: 5.733236e-02	ci right 6.399608e-02	k: 1212	n:20000
KS ci ratio: 2.379245e-02	ci left: 5.688649e-01	ci right 5.826131e-01	k: 11515	n:20000
TMEM195   20000 perm   6 sec   (3284 perm/sec)   p_kst 5.757500e-01   p_cons 6.060000e-02   p_joint 1.571000e-01

Joint ci ratio: 4.566379e-02	ci left: 1.926774e-01	ci right 2.017147e-01	k: 5915	n:30000
Cons ci ratio: 8.884641e-02	ci left: 5.821980e-02	ci right 6.366561e-02	k: 1827	n:30000
KS ci ratio: 1.944209e-02	ci left: 5.697496e-01	ci right 5.809691e-01	k: 17261	n:30000
TMEM195   30000 perm   8 sec   (3580 perm/sec)   p_kst 5.753667e-01   p_cons 6.090000e-02   p_joint 1.971667e-01

Outputting figure to mutsig2_images.part000000000177/TMEM195.7_1390_30000_0.57537_0.0609_0.19717.png
                gene_name: TMEM195
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.061 
      ci_cons_bounds_left: 0.058 
     ci_cons_bounds_right: 0.064 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 3 percent done.
TMEM200A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.145532e-01	ci left: 2.882687e-02	ci right 3.584904e-02	k: 322	n:10000
Cons ci ratio: 1.743772e-01	ci left: 4.389243e-02	ci right 5.237330e-02	k: 480	n:10000
KS ci ratio: 8.000136e-02	ci left: 1.857974e-01	ci right 2.013815e-01	k: 1935	n:10000
TMEM200A   10000 perm   2 sec   (5860 perm/sec)   p_kst 1.935000e-01   p_cons 4.800000e-02   p_joint 3.220000e-02

Joint ci ratio: 1.332927e-01	ci left: 3.868094e-02	ci right 4.425337e-02	k: 828	n:20000
Cons ci ratio: 1.191363e-01	ci left: 4.828298e-02	ci right 5.444828e-02	k: 1026	n:20000
KS ci ratio: 5.682515e-02	ci left: 1.867097e-01	ci right 1.976799e-01	k: 3843	n:20000
TMEM200A   20000 perm   4 sec   (5193 perm/sec)   p_kst 1.921500e-01   p_cons 5.130000e-02   p_joint 4.140000e-02

Joint ci ratio: 9.168391e-02	ci left: 5.479416e-02	ci right 6.009195e-02	k: 1722	n:30000
Cons ci ratio: 9.732508e-02	ci left: 4.879794e-02	ci right 5.382274e-02	k: 1538	n:30000
KS ci ratio: 4.638281e-02	ci left: 1.878206e-01	ci right 1.967724e-01	k: 5768	n:30000
TMEM200A   30000 perm   6 sec   (4957 perm/sec)   p_kst 1.922667e-01   p_cons 5.126667e-02   p_joint 5.740000e-02

Outputting figure to mutsig2_images.part000000000177/TMEM200A.5_1480_30000_0.19227_0.051267_0.0574.png
                gene_name: TMEM200A
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.051 
      ci_cons_bounds_left: 0.049 
     ci_cons_bounds_right: 0.054 
                  p_joint: 0.057 
     ci_joint_bounds_left: 0.055 
    ci_joint_bounds_right: 0.060 

Current progress: 6 percent done.
TMEM26
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.470749e-02	ci left: 5.507057e-01	ci right 5.702590e-01	k: 5605	n:10000
KS ci ratio: 2.199815e-02	ci left: 7.520101e-01	ci right 7.688379e-01	k: 7605	n:10000
TMEM26   10000 perm   2 sec   (6331 perm/sec)   p_kst 7.605000e-01   p_cons 5.605000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000177/TMEM26.5_1131_10000_0.7605_0.5605_1.png
                gene_name: TMEM26
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 9 percent done.
TMEM168
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.167540e-01	ci left: 9.535564e-02	ci right 1.072778e-01	k: 1012	n:10000
Cons ci ratio: 5.044595e-02	ci left: 3.668915e-01	ci right 3.859806e-01	k: 3764	n:10000
KS ci ratio: 1.408318e-01	ci left: 6.681548e-02	ci right 7.703558e-02	k: 718	n:10000
TMEM168   10000 perm   2 sec   (5826 perm/sec)   p_kst 7.180000e-02   p_cons 3.764000e-01   p_joint 1.012000e-01

Joint ci ratio: 7.527493e-02	ci left: 1.148875e-01	ci right 1.239235e-01	k: 2387	n:20000
Cons ci ratio: 3.579235e-02	ci left: 3.681347e-01	ci right 3.816017e-01	k: 7497	n:20000
KS ci ratio: 9.819427e-02	ci left: 7.016491e-02	ci right 7.745958e-02	k: 1475	n:20000
TMEM168   20000 perm   4 sec   (5206 perm/sec)   p_kst 7.375000e-02   p_cons 3.748500e-01   p_joint 1.193500e-01

Outputting figure to mutsig2_images.part000000000177/TMEM168.4_2110_20000_0.07375_0.37485_0.11935.png
                gene_name: TMEM168
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.074 
        ci_ks_bounds_left: 0.070 
       ci_ks_bounds_right: 0.077 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 12 percent done.
TMEM181
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.315853e-02	ci left: 1.741859e-01	ci right 1.893999e-01	k: 1817	n:10000
Cons ci ratio: 8.646081e-02	ci left: 1.630776e-01	ci right 1.779148e-01	k: 1704	n:10000
KS ci ratio: 7.178385e-02	ci left: 2.213865e-01	ci right 2.379712e-01	k: 2296	n:10000
TMEM181   10000 perm   2 sec   (5901 perm/sec)   p_kst 2.296000e-01   p_cons 1.704000e-01   p_joint 1.817000e-01

Outputting figure to mutsig2_images.part000000000177/TMEM181.4_1907_10000_0.2296_0.1704_0.1817.png
                gene_name: TMEM181
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.19 

Current progress: 16 percent done.
TMEM185A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.007806e-01	ci left: 1.418736e-02	ci right 1.929975e-02	k: 166	n:10000
Cons ci ratio: 8.921899e-02	ci left: 1.545332e-01	ci right 1.690644e-01	k: 1617	n:10000
KS ci ratio: 4.160103e-01	ci left: 6.974044e-03	ci right 1.072050e-02	k: 87	n:10000
TMEM185A   10000 perm   2 sec   (6359 perm/sec)   p_kst 8.700000e-03   p_cons 1.617000e-01   p_joint 1.660000e-02

Joint ci ratio: 2.658944e-01	ci left: 9.320579e-03	ci right 1.222429e-02	k: 214	n:20000
Cons ci ratio: 6.144226e-02	ci left: 1.638791e-01	ci right 1.743173e-01	k: 3381	n:20000
KS ci ratio: 2.933313e-01	ci left: 7.552441e-03	ci right 1.019332e-02	k: 176	n:20000
TMEM185A   20000 perm   4 sec   (5634 perm/sec)   p_kst 8.800000e-03   p_cons 1.690500e-01   p_joint 1.070000e-02

Joint ci ratio: 2.074060e-01	ci left: 1.054560e-02	ci right 1.301697e-02	k: 352	n:30000
Cons ci ratio: 4.986627e-02	ci left: 1.665238e-01	ci right 1.750734e-01	k: 5123	n:30000
KS ci ratio: 2.444304e-01	ci left: 7.461014e-03	ci right 9.569162e-03	k: 254	n:30000
TMEM185A   30000 perm   6 sec   (5368 perm/sec)   p_kst 8.466667e-03   p_cons 1.707667e-01   p_joint 1.173333e-02

Joint ci ratio: 1.803318e-01	ci left: 1.062150e-02	ci right 1.275027e-02	k: 466	n:40000
Cons ci ratio: 4.353567e-02	ci left: 1.648435e-01	ci right 1.722047e-01	k: 6740	n:40000
KS ci ratio: 2.110586e-01	ci left: 7.647359e-03	ci right 9.475061e-03	k: 341	n:40000
TMEM185A   40000 perm   8 sec   (5189 perm/sec)   p_kst 8.525000e-03   p_cons 1.685000e-01   p_joint 1.165000e-02

Joint ci ratio: 1.586677e-01	ci left: 1.110244e-02	ci right 1.303483e-02	k: 602	n:50000
Cons ci ratio: 3.889307e-02	ci left: 1.655657e-01	ci right 1.721527e-01	k: 8442	n:50000
KS ci ratio: 1.873458e-01	ci left: 7.866482e-03	ci right 9.511323e-03	k: 433	n:50000
TMEM185A   50000 perm   10 sec   (5049 perm/sec)   p_kst 8.660000e-03   p_cons 1.688400e-01   p_joint 1.204000e-02

Joint ci ratio: 1.431116e-01	ci left: 1.146553e-02	ci right 1.324877e-02	k: 740	n:60000
Cons ci ratio: 3.542365e-02	ci left: 1.664890e-01	ci right 1.725096e-01	k: 10169	n:60000
KS ci ratio: 1.687177e-01	ci left: 8.164001e-03	ci right 9.684071e-03	k: 534	n:60000
TMEM185A   60000 perm   12 sec   (4930 perm/sec)   p_kst 8.900000e-03   p_cons 1.694833e-01   p_joint 1.233333e-02

Joint ci ratio: 1.219022e-01	ci left: 1.366905e-02	ci right 1.545724e-02	k: 1018	n:70000
Cons ci ratio: 3.270141e-02	ci left: 1.675219e-01	ci right 1.731054e-01	k: 11921	n:70000
KS ci ratio: 1.555957e-01	ci left: 8.286188e-03	ci right 9.697821e-03	k: 628	n:70000
TMEM185A   70000 perm   15 sec   (4821 perm/sec)   p_kst 8.971429e-03   p_cons 1.703000e-01   p_joint 1.454286e-02

Joint ci ratio: 1.222581e-01	ci left: 1.191127e-02	ci right 1.347436e-02	k: 1014	n:80000
Cons ci ratio: 3.069144e-02	ci left: 1.667692e-01	ci right 1.719798e-01	k: 13549	n:80000
KS ci ratio: 1.445213e-01	ci left: 8.453581e-03	ci right 9.782384e-03	k: 728	n:80000
TMEM185A   80000 perm   17 sec   (4722 perm/sec)   p_kst 9.100000e-03   p_cons 1.693625e-01   p_joint 1.267500e-02

Joint ci ratio: 1.146512e-01	ci left: 1.208657e-02	ci right 1.356730e-02	k: 1153	n:90000
Cons ci ratio: 2.901499e-02	ci left: 1.661591e-01	ci right 1.710622e-01	k: 15174	n:90000
KS ci ratio: 1.355180e-01	ci left: 8.586549e-03	ci right 9.845389e-03	k: 828	n:90000
TMEM185A   90000 perm   19 sec   (4632 perm/sec)   p_kst 9.200000e-03   p_cons 1.686000e-01   p_joint 1.281111e-02

Joint ci ratio: 7.838356e-02	ci left: 2.344274e-02	ci right 2.536498e-02	k: 2439	n:100000
Cons ci ratio: 2.757534e-02	ci left: 1.657869e-01	ci right 1.704324e-01	k: 16810	n:100000
KS ci ratio: 1.261738e-01	ci left: 8.956468e-03	ci right 1.017223e-02	k: 955	n:100000
TMEM185A   100000 perm   22 sec   (4546 perm/sec)   p_kst 9.550000e-03   p_cons 1.681000e-01   p_joint 2.439000e-02

Joint ci ratio: 7.569527e-02	ci left: 2.289834e-02	ci right 2.470870e-02	k: 2617	n:110000
Cons ci ratio: 2.628446e-02	ci left: 1.659757e-01	ci right 1.704054e-01	k: 18500	n:110000
KS ci ratio: 1.205686e-01	ci left: 8.943989e-03	ci right 1.010027e-02	k: 1046	n:110000
TMEM185A   110000 perm   25 sec   (4462 perm/sec)   p_kst 9.509091e-03   p_cons 1.681818e-01   p_joint 2.379091e-02

Joint ci ratio: 7.424971e-02	ci left: 2.185648e-02	ci right 2.355003e-02	k: 2723	n:120000
Cons ci ratio: 2.513322e-02	ci left: 1.664275e-01	ci right 1.706719e-01	k: 20225	n:120000
KS ci ratio: 1.154960e-01	ci left: 8.958871e-03	ci right 1.006503e-02	k: 1140	n:120000
TMEM185A   120000 perm   27 sec   (4383 perm/sec)   p_kst 9.500000e-03   p_cons 1.685417e-01   p_joint 2.269167e-02

Joint ci ratio: 8.757901e-02	ci left: 1.451180e-02	ci right 1.584841e-02	k: 1972	n:130000
Cons ci ratio: 2.414556e-02	ci left: 1.665301e-01	ci right 1.706078e-01	k: 21913	n:130000
KS ci ratio: 1.116548e-01	ci left: 8.867607e-03	ci right 9.923681e-03	k: 1220	n:130000
TMEM185A   130000 perm   30 sec   (4309 perm/sec)   p_kst 9.384615e-03   p_cons 1.685615e-01   p_joint 1.516923e-02

Joint ci ratio: 8.436846e-02	ci left: 1.454462e-02	ci right 1.583272e-02	k: 2125	n:140000
Cons ci ratio: 2.327715e-02	ci left: 1.664857e-01	ci right 1.704137e-01	k: 23582	n:140000
KS ci ratio: 1.078387e-01	ci left: 8.845520e-03	ci right 9.860671e-03	k: 1308	n:140000
TMEM185A   140000 perm   33 sec   (4237 perm/sec)   p_kst 9.342857e-03   p_cons 1.684429e-01   p_joint 1.517857e-02

Joint ci ratio: 8.155965e-02	ci left: 1.454770e-02	ci right 1.579114e-02	k: 2274	n:150000
Cons ci ratio: 2.247797e-02	ci left: 1.666752e-01	ci right 1.704709e-01	k: 25285	n:150000
KS ci ratio: 1.042384e-01	ci left: 8.852888e-03	ci right 9.832885e-03	k: 1400	n:150000
TMEM185A   150000 perm   36 sec   (4167 perm/sec)   p_kst 9.333333e-03   p_cons 1.685667e-01   p_joint 1.516000e-02

Joint ci ratio: 7.917990e-02	ci left: 1.448974e-02	ci right 1.569042e-02	k: 2413	n:160000
Cons ci ratio: 2.176844e-02	ci left: 1.666813e-01	ci right 1.703558e-01	k: 26962	n:160000
KS ci ratio: 1.011130e-01	ci left: 8.835455e-03	ci right 9.782453e-03	k: 1488	n:160000
TMEM185A   160000 perm   39 sec   (4101 perm/sec)   p_kst 9.300000e-03   p_cons 1.685125e-01   p_joint 1.508125e-02

Joint ci ratio: 7.678351e-02	ci left: 1.451986e-02	ci right 1.568500e-02	k: 2566	n:170000
Cons ci ratio: 2.111769e-02	ci left: 1.667468e-01	ci right 1.703115e-01	k: 28649	n:170000
KS ci ratio: 9.781555e-02	ci left: 8.900813e-03	ci right 9.821918e-03	k: 1590	n:170000
TMEM185A   170000 perm   42 sec   (4038 perm/sec)   p_kst 9.352941e-03   p_cons 1.685235e-01   p_joint 1.509412e-02

Outputting figure to mutsig2_images.part000000000177/TMEM185A.4_1081_170000_0.0093529_0.16852_0.015094.png
                gene_name: TMEM185A
               theta_stop: 0.098 
                    nperm: 170000 
                     p_ks: 0.0094 
        ci_ks_bounds_left: 0.0089 
       ci_ks_bounds_right: 0.0098 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.015 
     ci_joint_bounds_left: 0.015 
    ci_joint_bounds_right: 0.016 

Current progress: 19 percent done.
TMEM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.854796e-02	ci left: 6.439792e-01	ci right 6.627314e-01	k: 6534	n:10000
Cons ci ratio: 4.286032e-02	ci left: 4.456034e-01	ci right 4.652226e-01	k: 4554	n:10000
KS ci ratio: 3.709500e-02	ci left: 5.176582e-01	ci right 5.373258e-01	k: 5275	n:10000
TMEM2   10000 perm   2 sec   (4747 perm/sec)   p_kst 5.275000e-01   p_cons 4.554000e-01   p_joint 6.534000e-01

Outputting figure to mutsig2_images.part000000000177/TMEM2.4_4244_10000_0.5275_0.4554_0.6534.png
                gene_name: TMEM2
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 22 percent done.
TMEM200C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.113784e-01	ci left: 1.317075e-02	ci right 1.811726e-02	k: 155	n:10000
Cons ci ratio: 2.583643e-01	ci left: 1.958938e-02	ci right 2.549330e-02	k: 224	n:10000
KS ci ratio: 6.812237e-01	ci left: 2.189796e-03	ci right 4.514469e-03	k: 32	n:10000
TMEM200C   10000 perm   2 sec   (6005 perm/sec)   p_kst 3.200000e-03   p_cons 2.240000e-02   p_joint 1.550000e-02

Joint ci ratio: 3.146564e-01	ci left: 6.489480e-03	ci right 8.956878e-03	k: 153	n:20000
Cons ci ratio: 1.885661e-01	ci left: 1.915306e-02	ci right 2.318783e-02	k: 422	n:20000
KS ci ratio: 4.373811e-01	ci left: 3.128462e-03	ci right 4.920482e-03	k: 79	n:20000
TMEM200C   20000 perm   4 sec   (5359 perm/sec)   p_kst 3.950000e-03   p_cons 2.110000e-02   p_joint 7.650000e-03

Joint ci ratio: 3.664373e-01	ci left: 3.105244e-03	ci right 4.526846e-03	k: 113	n:30000
Cons ci ratio: 1.516017e-01	ci left: 2.014522e-02	ci right 2.348162e-02	k: 653	n:30000
KS ci ratio: 3.874710e-01	ci left: 2.743017e-03	ci right 4.089323e-03	k: 101	n:30000
TMEM200C   30000 perm   6 sec   (5098 perm/sec)   p_kst 3.366667e-03   p_cons 2.176667e-02   p_joint 3.766667e-03

Joint ci ratio: 3.419265e-01	ci left: 2.716059e-03	ci right 3.857935e-03	k: 130	n:40000
Cons ci ratio: 1.309083e-01	ci left: 2.048801e-02	ci right 2.338197e-02	k: 876	n:40000
KS ci ratio: 3.272163e-01	ci left: 2.990936e-03	ci right 4.182924e-03	k: 142	n:40000
TMEM200C   40000 perm   8 sec   (4936 perm/sec)   p_kst 3.550000e-03   p_cons 2.190000e-02   p_joint 3.250000e-03

Joint ci ratio: 3.501734e-01	ci left: 2.063146e-03	ci right 2.956181e-03	k: 124	n:50000
Cons ci ratio: 1.161839e-01	ci left: 2.096525e-02	ci right 2.357063e-02	k: 1112	n:50000
KS ci ratio: 2.884511e-01	ci left: 3.149686e-03	ci right 4.229200e-03	k: 183	n:50000
TMEM200C   50000 perm   10 sec   (4815 perm/sec)   p_kst 3.660000e-03   p_cons 2.224000e-02   p_joint 2.480000e-03

Joint ci ratio: 2.993399e-01	ci left: 2.423896e-03	ci right 3.291968e-03	k: 170	n:60000
Cons ci ratio: 1.037640e-01	ci left: 2.202648e-02	ci right 2.445327e-02	k: 1393	n:60000
KS ci ratio: 2.591125e-01	ci left: 3.307901e-03	ci right 4.307705e-03	k: 227	n:60000
TMEM200C   60000 perm   13 sec   (4718 perm/sec)   p_kst 3.783333e-03   p_cons 2.321667e-02   p_joint 2.833333e-03

Joint ci ratio: 2.878210e-01	ci left: 2.262873e-03	ci right 3.036416e-03	k: 184	n:70000
Cons ci ratio: 9.518185e-02	ci left: 2.252997e-02	ci right 2.479546e-02	k: 1655	n:70000
KS ci ratio: 2.431242e-01	ci left: 3.250342e-03	ci right 4.162987e-03	k: 258	n:70000
TMEM200C   70000 perm   15 sec   (4628 perm/sec)   p_kst 3.685714e-03   p_cons 2.364286e-02   p_joint 2.628571e-03

Joint ci ratio: 3.230170e-01	ci left: 1.541191e-03	ci right 2.145853e-03	k: 146	n:80000
Cons ci ratio: 8.914487e-02	ci left: 2.254693e-02	ci right 2.466281e-02	k: 1887	n:80000
KS ci ratio: 2.309734e-01	ci left: 3.173258e-03	ci right 4.013376e-03	k: 286	n:80000
TMEM200C   80000 perm   18 sec   (4547 perm/sec)   p_kst 3.575000e-03   p_cons 2.358750e-02   p_joint 1.825000e-03

Joint ci ratio: 3.264034e-01	ci left: 1.339307e-03	ci right 1.871423e-03	k: 143	n:90000
Cons ci ratio: 8.396571e-02	ci left: 2.265073e-02	ci right 2.464680e-02	k: 2127	n:90000
KS ci ratio: 2.140933e-01	ci left: 3.313849e-03	ci right 4.118660e-03	k: 333	n:90000
TMEM200C   90000 perm   20 sec   (4471 perm/sec)   p_kst 3.700000e-03   p_cons 2.363333e-02   p_joint 1.588889e-03

Joint ci ratio: 3.264298e-01	ci left: 1.205362e-03	ci right 1.684305e-03	k: 143	n:100000
Cons ci ratio: 8.015209e-02	ci left: 2.242288e-02	ci right 2.430491e-02	k: 2335	n:100000
KS ci ratio: 2.045254e-01	ci left: 3.285693e-03	ci right 4.043545e-03	k: 365	n:100000
TMEM200C   100000 perm   23 sec   (4397 perm/sec)   p_kst 3.650000e-03   p_cons 2.335000e-02   p_joint 1.430000e-03

Joint ci ratio: 3.371713e-01	ci left: 1.020762e-03	ci right 1.442607e-03	k: 134	n:110000
Cons ci ratio: 7.633996e-02	ci left: 2.251469e-02	ci right 2.431056e-02	k: 2574	n:110000
KS ci ratio: 1.925273e-01	ci left: 3.393061e-03	ci right 4.124395e-03	k: 412	n:110000
TMEM200C   110000 perm   25 sec   (4320 perm/sec)   p_kst 3.745455e-03   p_cons 2.340000e-02   p_joint 1.218182e-03

Joint ci ratio: 3.311058e-01	ci left: 9.738658e-04	ci right 1.367546e-03	k: 139	n:120000
Cons ci ratio: 7.277347e-02	ci left: 2.274849e-02	ci right 2.447464e-02	k: 2832	n:120000
KS ci ratio: 1.846491e-01	ci left: 3.396147e-03	ci right 4.094839e-03	k: 448	n:120000
TMEM200C   120000 perm   28 sec   (4246 perm/sec)   p_kst 3.733333e-03   p_cons 2.360000e-02   p_joint 1.158333e-03

Joint ci ratio: 3.177668e-01	ci left: 9.837471e-04	ci right 1.362147e-03	k: 151	n:130000
Cons ci ratio: 7.015395e-02	ci left: 2.263040e-02	ci right 2.428325e-02	k: 3048	n:130000
KS ci ratio: 1.771160e-01	ci left: 3.421330e-03	ci right 4.093412e-03	k: 487	n:130000
TMEM200C   130000 perm   31 sec   (4160 perm/sec)   p_kst 3.746154e-03   p_cons 2.344615e-02   p_joint 1.161538e-03

Joint ci ratio: 2.098720e-01	ci left: 2.224890e-03	ci right 2.753195e-03	k: 347	n:140000
Cons ci ratio: 6.785152e-02	ci left: 2.249503e-02	ci right 2.408194e-02	k: 3259	n:140000
KS ci ratio: 1.710886e-01	ci left: 3.416056e-03	ci right 4.061909e-03	k: 522	n:140000
TMEM200C   140000 perm   34 sec   (4090 perm/sec)   p_kst 3.728571e-03   p_cons 2.327857e-02   p_joint 2.478571e-03

Joint ci ratio: 2.117268e-01	ci left: 2.038654e-03	ci right 2.527570e-03	k: 341	n:150000
Cons ci ratio: 6.568433e-02	ci left: 2.243096e-02	ci right 2.396088e-02	k: 3478	n:150000
KS ci ratio: 1.651922e-01	ci left: 3.430996e-03	ci right 4.055095e-03	k: 560	n:150000
TMEM200C   150000 perm   37 sec   (4024 perm/sec)   p_kst 3.733333e-03   p_cons 2.318667e-02   p_joint 2.273333e-03

Joint ci ratio: 2.136282e-01	ci left: 1.875718e-03	ci right 2.330126e-03	k: 335	n:160000
Cons ci ratio: 6.358047e-02	ci left: 2.246790e-02	ci right 2.394945e-02	k: 3712	n:160000
KS ci ratio: 1.597325e-01	ci left: 3.450403e-03	ci right 4.055298e-03	k: 599	n:160000
TMEM200C   160000 perm   40 sec   (3962 perm/sec)   p_kst 3.743750e-03   p_cons 2.320000e-02   p_joint 2.093750e-03

Joint ci ratio: 2.159067e-01	ci left: 1.726406e-03	ci right 2.149692e-03	k: 328	n:170000
Cons ci ratio: 6.174675e-02	ci left: 2.244325e-02	ci right 2.387896e-02	k: 3936	n:170000
KS ci ratio: 1.557624e-01	ci left: 3.422589e-03	ci right 4.006302e-03	k: 630	n:170000
TMEM200C   170000 perm   44 sec   (3904 perm/sec)   p_kst 3.705882e-03   p_cons 2.315294e-02   p_joint 1.929412e-03

Joint ci ratio: 2.300042e-01	ci left: 1.425889e-03	ci right 1.801567e-03	k: 289	n:180000
Cons ci ratio: 6.001140e-02	ci left: 2.246020e-02	ci right 2.385521e-02	k: 4167	n:180000
KS ci ratio: 1.507094e-01	ci left: 3.462181e-03	ci right 4.031764e-03	k: 673	n:180000
TMEM200C   180000 perm   47 sec   (3824 perm/sec)   p_kst 3.738889e-03   p_cons 2.315000e-02   p_joint 1.605556e-03

Joint ci ratio: 2.304122e-01	ci left: 1.345876e-03	ci right 1.701191e-03	k: 288	n:190000
Cons ci ratio: 5.843499e-02	ci left: 2.246032e-02	ci right 2.381745e-02	k: 4395	n:190000
KS ci ratio: 1.459141e-01	ci left: 3.508021e-03	ci right 4.065182e-03	k: 718	n:190000
TMEM200C   190000 perm   51 sec   (3732 perm/sec)   p_kst 3.778947e-03   p_cons 2.313158e-02   p_joint 1.515789e-03

Joint ci ratio: 2.300228e-01	ci left: 1.283289e-03	ci right 1.621426e-03	k: 289	n:200000
Cons ci ratio: 5.683210e-02	ci left: 2.257425e-02	ci right 2.389962e-02	k: 4646	n:200000
KS ci ratio: 1.422046e-01	ci left: 3.515773e-03	ci right 4.058765e-03	k: 756	n:200000
TMEM200C   200000 perm   54 sec   (3674 perm/sec)   p_kst 3.780000e-03   p_cons 2.323000e-02   p_joint 1.445000e-03

Joint ci ratio: 2.397470e-01	ci left: 1.119087e-03	ci right 1.428277e-03	k: 266	n:210000
Cons ci ratio: 5.541220e-02	ci left: 2.263082e-02	ci right 2.392525e-02	k: 4887	n:210000
KS ci ratio: 1.385023e-01	ci left: 3.536741e-03	ci right 4.067577e-03	k: 797	n:210000
TMEM200C   210000 perm   58 sec   (3590 perm/sec)   p_kst 3.795238e-03   p_cons 2.327143e-02   p_joint 1.266667e-03

Joint ci ratio: 2.324585e-01	ci left: 1.140923e-03	ci right 1.445188e-03	k: 283	n:220000
Cons ci ratio: 5.429996e-02	ci left: 2.251217e-02	ci right 2.377316e-02	k: 5090	n:220000
KS ci ratio: 1.345127e-01	ci left: 3.586717e-03	ci right 4.108307e-03	k: 845	n:220000
TMEM200C   220000 perm   62 sec   (3538 perm/sec)   p_kst 3.840909e-03   p_cons 2.313636e-02   p_joint 1.286364e-03

Joint ci ratio: 2.353876e-01	ci left: 1.062662e-03	ci right 1.350146e-03	k: 276	n:230000
Cons ci ratio: 5.312895e-02	ci left: 2.250708e-02	ci right 2.373976e-02	k: 5317	n:230000
KS ci ratio: 1.311439e-01	ci left: 3.615724e-03	ci right 4.127339e-03	k: 889	n:230000
TMEM200C   230000 perm   66 sec   (3473 perm/sec)   p_kst 3.865217e-03   p_cons 2.311739e-02   p_joint 1.200000e-03

Joint ci ratio: 2.366801e-01	ci left: 1.006620e-03	ci right 1.280657e-03	k: 273	n:240000
Cons ci ratio: 5.199698e-02	ci left: 2.253148e-02	ci right 2.373841e-02	k: 5551	n:240000
KS ci ratio: 1.281540e-01	ci left: 3.634396e-03	ci right 4.136036e-03	k: 931	n:240000
TMEM200C   240000 perm   71 sec   (3368 perm/sec)   p_kst 3.879167e-03   p_cons 2.312917e-02   p_joint 1.137500e-03

Joint ci ratio: 2.308547e-01	ci left: 1.019076e-03	ci right 1.288703e-03	k: 287	n:250000
Cons ci ratio: 5.097953e-02	ci left: 2.251468e-02	ci right 2.369641e-02	k: 5775	n:250000
KS ci ratio: 1.249099e-01	ci left: 3.678821e-03	ci right 4.172789e-03	k: 980	n:250000
TMEM200C   250000 perm   75 sec   (3313 perm/sec)   p_kst 3.920000e-03   p_cons 2.310000e-02   p_joint 1.148000e-03

Joint ci ratio: 2.243264e-01	ci left: 1.041540e-03	ci right 1.308241e-03	k: 304	n:260000
Cons ci ratio: 5.002809e-02	ci left: 2.249178e-02	ci right 2.364965e-02	k: 5997	n:260000
KS ci ratio: 1.221984e-01	ci left: 3.701331e-03	ci right 4.186752e-03	k: 1024	n:260000
TMEM200C   260000 perm   79 sec   (3276 perm/sec)   p_kst 3.938462e-03   p_cons 2.306538e-02   p_joint 1.169231e-03

Joint ci ratio: 2.292761e-01	ci left: 9.575466e-04	ci right 1.208916e-03	k: 291	n:270000
Cons ci ratio: 4.915633e-02	ci left: 2.244516e-02	ci right 2.357992e-02	k: 6212	n:270000
KS ci ratio: 1.200514e-01	ci left: 3.697130e-03	ci right 4.172875e-03	k: 1061	n:270000
TMEM200C   270000 perm   83 sec   (3241 perm/sec)   p_kst 3.929630e-03   p_cons 2.300741e-02   p_joint 1.077778e-03

Joint ci ratio: 2.243359e-01	ci left: 9.671401e-04	ci right 1.214801e-03	k: 304	n:280000
Cons ci ratio: 4.824034e-02	ci left: 2.248321e-02	ci right 2.359812e-02	k: 6450	n:280000
KS ci ratio: 1.180137e-01	ci left: 3.693297e-03	ci right 4.159920e-03	k: 1098	n:280000
TMEM200C   280000 perm   87 sec   (3205 perm/sec)   p_kst 3.921429e-03   p_cons 2.303571e-02   p_joint 1.085714e-03

Joint ci ratio: 2.388953e-01	ci left: 8.168404e-04	ci right 1.041602e-03	k: 268	n:290000
Cons ci ratio: 4.734475e-02	ci left: 2.254608e-02	ci right 2.364279e-02	k: 6696	n:290000
KS ci ratio: 1.158208e-01	ci left: 3.706536e-03	ci right 4.165534e-03	k: 1140	n:290000
TMEM200C   290000 perm   91 sec   (3170 perm/sec)   p_kst 3.931034e-03   p_cons 2.308966e-02   p_joint 9.241379e-04

Joint ci ratio: 2.349966e-01	ci left: 8.178316e-04	ci right 1.038659e-03	k: 277	n:300000
Cons ci ratio: 4.655218e-02	ci left: 2.255221e-02	ci right 2.363036e-02	k: 6926	n:300000
KS ci ratio: 1.136975e-01	ci left: 3.722205e-03	ci right 4.174127e-03	k: 1183	n:300000
TMEM200C   300000 perm   96 sec   (3136 perm/sec)   p_kst 3.943333e-03   p_cons 2.308667e-02   p_joint 9.233333e-04

Joint ci ratio: 2.550727e-01	ci left: 6.642636e-04	ci right 8.613917e-04	k: 235	n:310000
Cons ci ratio: 4.582108e-02	ci left: 2.253576e-02	ci right 2.359576e-02	k: 7149	n:310000
KS ci ratio: 1.118241e-01	ci left: 3.727527e-03	ci right 4.172147e-03	k: 1223	n:310000
TMEM200C   310000 perm   100 sec   (3102 perm/sec)   p_kst 3.945161e-03   p_cons 2.306129e-02   p_joint 7.580645e-04

Joint ci ratio: 2.384626e-01	ci left: 7.431962e-04	ci right 9.472680e-04	k: 269	n:320000
Cons ci ratio: 4.500791e-02	ci left: 2.263482e-02	ci right 2.368009e-02	k: 7409	n:320000
KS ci ratio: 1.113300e-01	ci left: 3.644449e-03	ci right 4.077112e-03	k: 1234	n:320000
TMEM200C   320000 perm   104 sec   (3068 perm/sec)   p_kst 3.856250e-03   p_cons 2.315313e-02   p_joint 8.406250e-04

Joint ci ratio: 2.316936e-01	ci left: 7.663061e-04	ci right 9.698962e-04	k: 285	n:330000
Cons ci ratio: 4.433428e-02	ci left: 2.262911e-02	ci right 2.365808e-02	k: 7636	n:330000
KS ci ratio: 1.099162e-01	ci left: 3.628296e-03	ci right 4.053217e-03	k: 1266	n:330000
TMEM200C   330000 perm   109 sec   (3035 perm/sec)   p_kst 3.836364e-03   p_cons 2.313939e-02   p_joint 8.636364e-04

Joint ci ratio: 2.277458e-01	ci left: 7.714873e-04	ci right 9.724708e-04	k: 295	n:340000
Cons ci ratio: 4.361344e-02	ci left: 2.270241e-02	ci right 2.371750e-02	k: 7890	n:340000
KS ci ratio: 1.082625e-01	ci left: 3.633158e-03	ci right 4.051839e-03	k: 1305	n:340000
TMEM200C   340000 perm   113 sec   (3002 perm/sec)   p_kst 3.838235e-03   p_cons 2.320588e-02   p_joint 8.676471e-04

Joint ci ratio: 2.232641e-01	ci left: 7.817944e-04	ci right 9.809044e-04	k: 307	n:350000
Cons ci ratio: 4.292934e-02	ci left: 2.276882e-02	ci right 2.377052e-02	k: 8143	n:350000
KS ci ratio: 1.065224e-01	ci left: 3.648912e-03	ci right 4.062226e-03	k: 1348	n:350000
TMEM200C   350000 perm   118 sec   (2970 perm/sec)   p_kst 3.851429e-03   p_cons 2.326571e-02   p_joint 8.771429e-04

Joint ci ratio: 1.667181e-01	ci left: 1.405495e-03	ci right 1.663746e-03	k: 551	n:360000
Cons ci ratio: 4.235916e-02	ci left: 2.274369e-02	ci right 2.373067e-02	k: 8364	n:360000
KS ci ratio: 1.050151e-01	ci left: 3.653022e-03	ci right 4.060584e-03	k: 1387	n:360000
TMEM200C   360000 perm   123 sec   (2939 perm/sec)   p_kst 3.852778e-03   p_cons 2.323333e-02   p_joint 1.530556e-03

Joint ci ratio: 1.685666e-01	ci left: 1.336433e-03	ci right 1.584993e-03	k: 539	n:370000
Cons ci ratio: 4.183356e-02	ci left: 2.269593e-02	ci right 2.366832e-02	k: 8576	n:370000
KS ci ratio: 1.037161e-01	ci left: 3.646416e-03	ci right 4.047902e-03	k: 1422	n:370000
TMEM200C   370000 perm   127 sec   (2908 perm/sec)   p_kst 3.843243e-03   p_cons 2.317838e-02   p_joint 1.456757e-03

Joint ci ratio: 1.659737e-01	ci left: 1.344128e-03	ci right 1.589890e-03	k: 556	n:380000
Cons ci ratio: 4.128619e-02	ci left: 2.269503e-02	ci right 2.365436e-02	k: 8805	n:380000
KS ci ratio: 1.026410e-01	ci left: 3.627366e-03	ci right 4.022365e-03	k: 1452	n:380000
TMEM200C   380000 perm   132 sec   (2877 perm/sec)   p_kst 3.821053e-03   p_cons 2.317105e-02   p_joint 1.463158e-03

Joint ci ratio: 1.830618e-01	ci left: 1.066864e-03	ci right 1.284246e-03	k: 457	n:390000
Cons ci ratio: 4.215903e-02	ci left: 2.122977e-02	ci right 2.214659e-02	k: 8457	n:390000
KS ci ratio: 1.016330e-01	ci left: 3.606814e-03	ci right 3.995487e-03	k: 1481	n:390000
TMEM200C   390000 perm   137 sec   (2848 perm/sec)   p_kst 3.797436e-03   p_cons 2.168462e-02   p_joint 1.171795e-03

Joint ci ratio: 1.816797e-01	ci left: 1.056893e-03	ci right 1.270438e-03	k: 464	n:400000
Cons ci ratio: 4.160633e-02	ci left: 2.125811e-02	ci right 2.216383e-02	k: 8683	n:400000
KS ci ratio: 1.001893e-01	ci left: 3.621432e-03	ci right 4.005811e-03	k: 1524	n:400000
TMEM200C   400000 perm   142 sec   (2819 perm/sec)   p_kst 3.810000e-03   p_cons 2.170750e-02   p_joint 1.160000e-03

Joint ci ratio: 1.653891e-01	ci left: 1.255124e-03	ci right 1.483723e-03	k: 560	n:410000
Cons ci ratio: 3.982264e-02	ci left: 2.262784e-02	ci right 2.354965e-02	k: 9465	n:410000
KS ci ratio: 9.902749e-02	ci left: 3.618721e-03	ci right 3.998100e-03	k: 1560	n:410000
TMEM200C   410000 perm   147 sec   (2791 perm/sec)   p_kst 3.804878e-03   p_cons 2.308537e-02   p_joint 1.365854e-03

Joint ci ratio: 1.632211e-01	ci left: 1.259486e-03	ci right 1.485578e-03	k: 575	n:420000
Cons ci ratio: 3.936832e-02	ci left: 2.260770e-02	ci right 2.351794e-02	k: 9685	n:420000
KS ci ratio: 9.753805e-02	ci left: 3.644040e-03	ci right 4.019999e-03	k: 1608	n:420000
TMEM200C   420000 perm   152 sec   (2763 perm/sec)   p_kst 3.828571e-03   p_cons 2.305952e-02   p_joint 1.369048e-03

Joint ci ratio: 1.659879e-01	ci left: 1.187826e-03	ci right 1.405030e-03	k: 556	n:430000
Cons ci ratio: 3.892517e-02	ci left: 2.259316e-02	ci right 2.349235e-02	k: 9907	n:430000
KS ci ratio: 9.617212e-02	ci left: 3.663682e-03	ci right 4.036076e-03	k: 1654	n:430000
TMEM200C   430000 perm   157 sec   (2735 perm/sec)   p_kst 3.846512e-03   p_cons 2.303953e-02   p_joint 1.293023e-03

Joint ci ratio: 1.651024e-01	ci left: 1.173901e-03	ci right 1.387299e-03	k: 562	n:440000
Cons ci ratio: 3.846364e-02	ci left: 2.261761e-02	ci right 2.350686e-02	k: 10146	n:440000
KS ci ratio: 9.519970e-02	ci left: 3.655840e-03	ci right 4.023469e-03	k: 1688	n:440000
TMEM200C   440000 perm   162 sec   (2708 perm/sec)   p_kst 3.836364e-03   p_cons 2.305909e-02   p_joint 1.277273e-03

Joint ci ratio: 1.633706e-01	ci left: 1.173385e-03	ci right 1.384232e-03	k: 574	n:450000
Cons ci ratio: 3.804816e-02	ci left: 2.260581e-02	ci right 2.348479e-02	k: 10369	n:450000
KS ci ratio: 9.392842e-02	ci left: 3.674405e-03	ci right 4.038696e-03	k: 1734	n:450000
TMEM200C   450000 perm   168 sec   (2682 perm/sec)   p_kst 3.853333e-03   p_cons 2.304222e-02   p_joint 1.275556e-03

Joint ci ratio: 1.764531e-01	ci left: 9.771760e-04	ci right 1.168328e-03	k: 492	n:460000
Cons ci ratio: 3.763858e-02	ci left: 2.260319e-02	ci right 2.347240e-02	k: 10596	n:460000
KS ci ratio: 9.283765e-02	ci left: 3.681576e-03	ci right 4.042109e-03	k: 1775	n:460000
TMEM200C   460000 perm   173 sec   (2657 perm/sec)   p_kst 3.858696e-03   p_cons 2.303478e-02   p_joint 1.069565e-03

Joint ci ratio: 1.859469e-01	ci left: 8.568501e-04	ci right 1.034501e-03	k: 443	n:470000
Cons ci ratio: 3.725428e-02	ci left: 2.258597e-02	ci right 2.344546e-02	k: 10816	n:470000
KS ci ratio: 9.170804e-02	ci left: 3.694702e-03	ci right 4.051882e-03	k: 1819	n:470000
TMEM200C   470000 perm   179 sec   (2632 perm/sec)   p_kst 3.870213e-03   p_cons 2.301277e-02   p_joint 9.425532e-04

Joint ci ratio: 2.073910e-01	ci left: 6.666400e-04	ci right 8.228214e-04	k: 356	n:480000
Cons ci ratio: 3.689007e-02	ci left: 2.255919e-02	ci right 2.340908e-02	k: 11031	n:480000
KS ci ratio: 9.066753e-02	ci left: 3.703235e-03	ci right 4.056962e-03	k: 1861	n:480000
TMEM200C   480000 perm   184 sec   (2608 perm/sec)   p_kst 3.877083e-03   p_cons 2.298125e-02   p_joint 7.416667e-04

Joint ci ratio: 2.059543e-01	ci left: 6.627110e-04	ci right 8.167607e-04	k: 361	n:490000
Cons ci ratio: 3.653301e-02	ci left: 2.253758e-02	ci right 2.337828e-02	k: 11248	n:490000
KS ci ratio: 8.954370e-02	ci left: 3.721417e-03	ci right 4.072244e-03	k: 1908	n:490000
TMEM200C   490000 perm   190 sec   (2583 perm/sec)   p_kst 3.893878e-03   p_cons 2.295510e-02   p_joint 7.367347e-04

Joint ci ratio: 2.037155e-01	ci left: 6.646362e-04	ci right 8.172450e-04	k: 369	n:500000
Cons ci ratio: 3.615065e-02	ci left: 2.256049e-02	ci right 2.339305e-02	k: 11487	n:500000
KS ci ratio: 8.855158e-02	ci left: 3.731074e-03	ci right 4.078713e-03	k: 1951	n:500000
TMEM200C   500000 perm   195 sec   (2560 perm/sec)   p_kst 3.902000e-03   p_cons 2.297400e-02   p_joint 7.380000e-04

Joint ci ratio: 2.031682e-01	ci left: 6.553256e-04	ci right 8.053421e-04	k: 371	n:510000
Cons ci ratio: 3.576755e-02	ci left: 2.259810e-02	ci right 2.342302e-02	k: 11734	n:510000
KS ci ratio: 8.772426e-02	ci left: 3.728866e-03	ci right 4.072886e-03	k: 1988	n:510000
TMEM200C   510000 perm   201 sec   (2536 perm/sec)   p_kst 3.898039e-03   p_cons 2.300784e-02   p_joint 7.274510e-04

Joint ci ratio: 2.012833e-01	ci left: 6.555031e-04	ci right 8.039970e-04	k: 378	n:520000
Cons ci ratio: 3.543727e-02	ci left: 2.258282e-02	ci right 2.339943e-02	k: 11954	n:520000
KS ci ratio: 8.685517e-02	ci left: 3.732401e-03	ci right 4.073163e-03	k: 2028	n:520000
TMEM200C   520000 perm   207 sec   (2512 perm/sec)   p_kst 3.900000e-03   p_cons 2.298846e-02   p_joint 7.269231e-04

Joint ci ratio: 1.991918e-01	ci left: 6.574728e-04	ci right 8.046773e-04	k: 386	n:530000
Cons ci ratio: 3.511745e-02	ci left: 2.256629e-02	ci right 2.337478e-02	k: 12173	n:530000
KS ci ratio: 8.603228e-02	ci left: 3.733973e-03	ci right 4.071486e-03	k: 2067	n:530000
TMEM200C   530000 perm   213 sec   (2489 perm/sec)   p_kst 3.900000e-03   p_cons 2.296792e-02   p_joint 7.283019e-04

Joint ci ratio: 1.986801e-01	ci left: 6.488163e-04	ci right 7.936642e-04	k: 388	n:540000
Cons ci ratio: 3.480470e-02	ci left: 2.255224e-02	ci right 2.335289e-02	k: 12393	n:540000
KS ci ratio: 8.519177e-02	ci left: 3.739126e-03	ci right 4.073639e-03	k: 2108	n:540000
TMEM200C   540000 perm   219 sec   (2467 perm/sec)   p_kst 3.903704e-03   p_cons 2.295000e-02   p_joint 7.185185e-04

Joint ci ratio: 1.976670e-01	ci left: 6.439313e-04	ci right 7.868673e-04	k: 392	n:550000
Cons ci ratio: 3.448338e-02	ci left: 2.256037e-02	ci right 2.335376e-02	k: 12625	n:550000
KS ci ratio: 8.469237e-02	ci left: 3.715629e-03	ci right 4.045995e-03	k: 2133	n:550000
TMEM200C   550000 perm   225 sec   (2444 perm/sec)   p_kst 3.878182e-03   p_cons 2.295455e-02   p_joint 7.127273e-04

Joint ci ratio: 1.971669e-01	ci left: 6.358272e-04	ci right 7.765642e-04	k: 394	n:560000
Cons ci ratio: 3.418167e-02	ci left: 2.255407e-02	ci right 2.334016e-02	k: 12849	n:560000
KS ci ratio: 8.367800e-02	ci left: 3.740182e-03	ci right 4.068554e-03	k: 2185	n:560000
TMEM200C   560000 perm   231 sec   (2422 perm/sec)   p_kst 3.901786e-03   p_cons 2.294464e-02   p_joint 7.035714e-04

Joint ci ratio: 1.956864e-01	ci left: 6.346809e-04	ci right 7.739837e-04	k: 400	n:570000
Cons ci ratio: 3.388775e-02	ci left: 2.254802e-02	ci right 2.332702e-02	k: 13073	n:570000
KS ci ratio: 8.305390e-02	ci left: 3.731252e-03	ci right 4.056278e-03	k: 2218	n:570000
TMEM200C   570000 perm   238 sec   (2398 perm/sec)   p_kst 3.891228e-03   p_cons 2.293509e-02   p_joint 7.017544e-04

Joint ci ratio: 1.974195e-01	ci left: 6.122624e-04	ci right 7.479780e-04	k: 393	n:580000
Cons ci ratio: 3.359870e-02	ci left: 2.254563e-02	ci right 2.331777e-02	k: 13299	n:580000
KS ci ratio: 8.251716e-02	ci left: 3.715884e-03	ci right 4.037379e-03	k: 2247	n:580000
TMEM200C   580000 perm   245 sec   (2370 perm/sec)   p_kst 3.874138e-03   p_cons 2.292931e-02   p_joint 6.775862e-04

Joint ci ratio: 1.971704e-01	ci left: 6.034960e-04	ci right 7.370793e-04	k: 394	n:590000
Cons ci ratio: 3.329426e-02	ci left: 2.257360e-02	ci right 2.333957e-02	k: 13543	n:590000
KS ci ratio: 8.179259e-02	ci left: 3.719307e-03	ci right 4.038138e-03	k: 2287	n:590000
TMEM200C   590000 perm   251 sec   (2350 perm/sec)   p_kst 3.876271e-03   p_cons 2.295424e-02   p_joint 6.677966e-04

Joint ci ratio: 1.964265e-01	ci left: 5.981912e-04	ci right 7.300409e-04	k: 397	n:600000
Cons ci ratio: 3.302614e-02	ci left: 2.256265e-02	ci right 2.332196e-02	k: 13764	n:600000
KS ci ratio: 8.120944e-02	ci left: 3.711197e-03	ci right 4.026957e-03	k: 2320	n:600000
TMEM200C   600000 perm   257 sec   (2330 perm/sec)   p_kst 3.866667e-03   p_cons 2.294000e-02   p_joint 6.616667e-04

Joint ci ratio: 1.979261e-01	ci left: 5.790337e-04	ci right 7.077528e-04	k: 391	n:610000
Cons ci ratio: 3.279802e-02	ci left: 2.250655e-02	ci right 2.325864e-02	k: 13957	n:610000
KS ci ratio: 8.041598e-02	ci left: 3.724244e-03	ci right 4.037873e-03	k: 2366	n:610000
TMEM200C   610000 perm   264 sec   (2311 perm/sec)   p_kst 3.878689e-03   p_cons 2.288033e-02   p_joint 6.409836e-04

Joint ci ratio: 1.959366e-01	ci left: 5.819616e-04	ci right 7.098759e-04	k: 399	n:620000
Cons ci ratio: 3.252754e-02	ci left: 2.251628e-02	ci right 2.326238e-02	k: 14190	n:620000
KS ci ratio: 7.966190e-02	ci left: 3.735305e-03	ci right 4.046779e-03	k: 2411	n:620000
TMEM200C   620000 perm   270 sec   (2292 perm/sec)   p_kst 3.888710e-03   p_cons 2.288710e-02   p_joint 6.435484e-04

Joint ci ratio: 1.935318e-01	ci left: 5.878234e-04	ci right 7.152537e-04	k: 409	n:630000
Cons ci ratio: 3.225792e-02	ci left: 2.253360e-02	ci right 2.327397e-02	k: 14428	n:630000
KS ci ratio: 7.888031e-02	ci left: 3.750695e-03	ci right 4.060243e-03	k: 2459	n:630000
TMEM200C   630000 perm   277 sec   (2274 perm/sec)   p_kst 3.903175e-03   p_cons 2.290159e-02   p_joint 6.492063e-04

Joint ci ratio: 1.912135e-01	ci left: 5.935113e-04	ci right 7.204543e-04	k: 419	n:640000
Cons ci ratio: 3.198709e-02	ci left: 2.256126e-02	ci right 2.329619e-02	k: 14673	n:640000
KS ci ratio: 7.829384e-02	ci left: 3.748767e-03	ci right 4.055750e-03	k: 2496	n:640000
TMEM200C   640000 perm   284 sec   (2255 perm/sec)   p_kst 3.900000e-03   p_cons 2.292656e-02   p_joint 6.546875e-04

Joint ci ratio: 1.887570e-01	ci left: 6.004988e-04	ci right 7.270971e-04	k: 430	n:650000
Cons ci ratio: 3.169797e-02	ci left: 2.262320e-02	ci right 2.335337e-02	k: 14941	n:650000
KS ci ratio: 7.752088e-02	ci left: 3.766519e-03	ci right 4.071774e-03	k: 2546	n:650000
TMEM200C   650000 perm   291 sec   (2237 perm/sec)   p_kst 3.916923e-03   p_cons 2.298615e-02   p_joint 6.615385e-04

Joint ci ratio: 1.861822e-01	ci left: 6.087292e-04	ci right 7.351143e-04	k: 442	n:660000
Cons ci ratio: 3.142923e-02	ci left: 2.266525e-02	ci right 2.339046e-02	k: 15197	n:660000
KS ci ratio: 7.688936e-02	ci left: 3.771859e-03	ci right 4.074945e-03	k: 2588	n:660000
TMEM200C   660000 perm   297 sec   (2219 perm/sec)   p_kst 3.921212e-03   p_cons 2.302576e-02   p_joint 6.696970e-04

Joint ci ratio: 1.851405e-01	ci left: 6.067594e-04	ci right 7.319516e-04	k: 447	n:670000
Cons ci ratio: 3.121065e-02	ci left: 2.264386e-02	ci right 2.336326e-02	k: 15411	n:670000
KS ci ratio: 7.638970e-02	ci left: 3.765336e-03	ci right 4.065844e-03	k: 2622	n:670000
TMEM200C   670000 perm   304 sec   (2201 perm/sec)   p_kst 3.913433e-03   p_cons 2.300149e-02   p_joint 6.671642e-04

Joint ci ratio: 1.837108e-01	ci left: 6.076554e-04	ci right 7.319565e-04	k: 454	n:680000
Cons ci ratio: 3.098947e-02	ci left: 2.263333e-02	ci right 2.334721e-02	k: 15632	n:680000
KS ci ratio: 7.574242e-02	ci left: 3.774882e-03	ci right 4.073487e-03	k: 2667	n:680000
TMEM200C   680000 perm   311 sec   (2184 perm/sec)   p_kst 3.922059e-03   p_cons 2.298824e-02   p_joint 6.676471e-04

Joint ci ratio: 1.821166e-01	ci left: 6.099122e-04	ci right 7.334728e-04	k: 462	n:690000
Cons ci ratio: 3.073228e-02	ci left: 2.268210e-02	ci right 2.339148e-02	k: 15894	n:690000
KS ci ratio: 7.527864e-02	ci left: 3.767096e-03	ci right 4.063180e-03	k: 2700	n:690000
TMEM200C   690000 perm   318 sec   (2167 perm/sec)   p_kst 3.913043e-03   p_cons 2.303478e-02   p_joint 6.695652e-04

Joint ci ratio: 1.805632e-01	ci left: 6.121091e-04	ci right 7.349413e-04	k: 470	n:700000
Cons ci ratio: 3.052589e-02	ci left: 2.266428e-02	ci right 2.336825e-02	k: 16110	n:700000
KS ci ratio: 7.469994e-02	ci left: 3.772155e-03	ci right 4.066259e-03	k: 2742	n:700000
TMEM200C   700000 perm   326 sec   (2150 perm/sec)   p_kst 3.917143e-03   p_cons 2.301429e-02   p_joint 6.714286e-04

Joint ci ratio: 1.790488e-01	ci left: 6.142483e-04	ci right 7.363642e-04	k: 478	n:710000
Cons ci ratio: 3.030936e-02	ci left: 2.266794e-02	ci right 2.336695e-02	k: 16341	n:710000
KS ci ratio: 7.410768e-02	ci left: 3.779846e-03	ci right 4.072112e-03	k: 2786	n:710000
TMEM200C   710000 perm   333 sec   (2133 perm/sec)   p_kst 3.923944e-03   p_cons 2.301549e-02   p_joint 6.732394e-04

Joint ci ratio: 1.459152e-01	ci left: 9.283134e-04	ci right 1.075749e-03	k: 720	n:720000
Cons ci ratio: 3.008343e-02	ci left: 2.269220e-02	ci right 2.338665e-02	k: 16587	n:720000
KS ci ratio: 7.363381e-02	ci left: 3.776424e-03	ci right 4.066479e-03	k: 2822	n:720000
TMEM200C   720000 perm   340 sec   (2117 perm/sec)   p_kst 3.919444e-03   p_cons 2.303750e-02   p_joint 1.000000e-03

Joint ci ratio: 1.407357e-01	ci left: 9.869196e-04	ci right 1.137633e-03	k: 774	n:730000
Cons ci ratio: 2.884233e-02	ci left: 2.432339e-02	ci right 2.503655e-02	k: 18015	n:730000
KS ci ratio: 7.322035e-02	ci left: 3.767722e-03	ci right 4.055415e-03	k: 2854	n:730000
TMEM200C   730000 perm   347 sec   (2101 perm/sec)   p_kst 3.909589e-03   p_cons 2.467808e-02   p_joint 1.060274e-03

Joint ci ratio: 1.399257e-01	ci left: 9.853180e-04	ci right 1.134848e-03	k: 783	n:740000
Cons ci ratio: 2.862814e-02	ci left: 2.435695e-02	ci right 2.506570e-02	k: 18285	n:740000
KS ci ratio: 7.268750e-02	ci left: 3.772529e-03	ci right 4.058403e-03	k: 2896	n:740000
TMEM200C   740000 perm   355 sec   (2085 perm/sec)   p_kst 3.913514e-03   p_cons 2.470946e-02   p_joint 1.058108e-03

Joint ci ratio: 1.389543e-01	ci left: 9.863354e-04	ci right 1.134895e-03	k: 794	n:750000
Cons ci ratio: 2.844460e-02	ci left: 2.434593e-02	ci right 2.504975e-02	k: 18522	n:750000
KS ci ratio: 7.214149e-02	ci left: 3.779833e-03	ci right 4.064019e-03	k: 2940	n:750000
TMEM200C   750000 perm   363 sec   (2069 perm/sec)   p_kst 3.920000e-03   p_cons 2.469600e-02   p_joint 1.058667e-03

Joint ci ratio: 1.393947e-01	ci left: 9.670068e-04	ci right 1.113155e-03	k: 789	n:760000
Cons ci ratio: 2.824294e-02	ci left: 2.437181e-02	ci right 2.507129e-02	k: 18787	n:760000
KS ci ratio: 7.155947e-02	ci left: 3.792123e-03	ci right 4.074837e-03	k: 2988	n:760000
TMEM200C   760000 perm   371 sec   (2051 perm/sec)   p_kst 3.931579e-03   p_cons 2.471974e-02   p_joint 1.038158e-03

Joint ci ratio: 1.387816e-01	ci left: 9.632227e-04	ci right 1.108106e-03	k: 796	n:770000
Cons ci ratio: 2.805760e-02	ci left: 2.437639e-02	ci right 2.507134e-02	k: 19036	n:770000
KS ci ratio: 7.110895e-02	ci left: 3.791345e-03	ci right 4.072148e-03	k: 3026	n:770000
TMEM200C   770000 perm   378 sec   (2036 perm/sec)   p_kst 3.929870e-03   p_cons 2.472208e-02   p_joint 1.033766e-03

Joint ci ratio: 1.377483e-01	ci left: 9.657262e-04	ci right 1.109816e-03	k: 808	n:780000
Cons ci ratio: 2.787881e-02	ci left: 2.437578e-02	ci right 2.506622e-02	k: 19281	n:780000
KS ci ratio: 7.056289e-02	ci left: 3.801927e-03	ci right 4.081264e-03	k: 3073	n:780000
TMEM200C   780000 perm   386 sec   (2021 perm/sec)   p_kst 3.939744e-03   p_cons 2.471923e-02   p_joint 1.035897e-03

Joint ci ratio: 1.380913e-01	ci left: 9.486127e-04	ci right 1.090530e-03	k: 804	n:790000
Cons ci ratio: 2.769178e-02	ci left: 2.439531e-02	ci right 2.508159e-02	k: 19542	n:790000
KS ci ratio: 7.018745e-02	ci left: 3.794838e-03	ci right 4.072110e-03	k: 3106	n:790000
TMEM200C   790000 perm   394 sec   (2006 perm/sec)   p_kst 3.931646e-03   p_cons 2.473671e-02   p_joint 1.017722e-03

Joint ci ratio: 1.375799e-01	ci left: 9.439962e-04	ci right 1.084657e-03	k: 810	n:800000
Cons ci ratio: 2.752842e-02	ci left: 2.437961e-02	ci right 2.506134e-02	k: 19775	n:800000
KS ci ratio: 6.976219e-02	ci left: 3.794072e-03	ci right 4.069539e-03	k: 3144	n:800000
TMEM200C   800000 perm   402 sec   (1991 perm/sec)   p_kst 3.930000e-03   p_cons 2.471875e-02   p_joint 1.012500e-03

Joint ci ratio: 1.367395e-01	ci left: 9.442640e-04	ci right 1.084035e-03	k: 820	n:810000
Cons ci ratio: 2.735880e-02	ci left: 2.438025e-02	ci right 2.505773e-02	k: 20021	n:810000
KS ci ratio: 6.934458e-02	ci left: 3.793329e-03	ci right 4.067028e-03	k: 3182	n:810000
TMEM200C   810000 perm   410 sec   (1977 perm/sec)   p_kst 3.928395e-03   p_cons 2.471728e-02   p_joint 1.012346e-03

Joint ci ratio: 1.130306e-01	ci left: 1.381832e-03	ci right 1.548551e-03	k: 1200	n:820000
Cons ci ratio: 2.718335e-02	ci left: 2.439663e-02	ci right 2.507015e-02	k: 20280	n:820000
KS ci ratio: 6.893437e-02	ci left: 3.792609e-03	ci right 4.064572e-03	k: 3220	n:820000
TMEM200C   820000 perm   418 sec   (1963 perm/sec)   p_kst 3.926829e-03   p_cons 2.473171e-02   p_joint 1.463415e-03

Joint ci ratio: 1.185465e-01	ci left: 1.237654e-03	ci right 1.394775e-03	k: 1091	n:830000
Cons ci ratio: 2.703012e-02	ci left: 2.437912e-02	ci right 2.504830e-02	k: 20511	n:830000
KS ci ratio: 6.673573e-02	ci left: 4.001572e-03	ci right 4.279014e-03	k: 3435	n:830000
TMEM200C   830000 perm   426 sec   (1948 perm/sec)   p_kst 4.138554e-03   p_cons 2.471205e-02   p_joint 1.314458e-03

Joint ci ratio: 1.196496e-01	ci left: 1.199819e-03	ci right 1.353654e-03	k: 1071	n:840000
Cons ci ratio: 2.686087e-02	ci left: 2.439515e-02	ci right 2.506051e-02	k: 20770	n:840000
KS ci ratio: 6.630283e-02	ci left: 4.006615e-03	ci right 4.282536e-03	k: 3480	n:840000
TMEM200C   840000 perm   434 sec   (1934 perm/sec)   p_kst 4.142857e-03   p_cons 2.472619e-02   p_joint 1.275000e-03

Joint ci ratio: 1.190956e-01	ci left: 1.197116e-03	ci right 1.349844e-03	k: 1081	n:850000
Cons ci ratio: 2.671366e-02	ci left: 2.437692e-02	ci right 2.503809e-02	k: 21000	n:850000
KS ci ratio: 6.599110e-02	ci left: 3.997659e-03	ci right 4.271619e-03	k: 3513	n:850000
TMEM200C   850000 perm   443 sec   (1921 perm/sec)   p_kst 4.132941e-03   p_cons 2.470588e-02   p_joint 1.271765e-03

Joint ci ratio: 1.188219e-01	ci left: 1.188837e-03	ci right 1.340136e-03	k: 1086	n:860000
Cons ci ratio: 2.655794e-02	ci left: 2.437876e-02	ci right 2.503607e-02	k: 21247	n:860000
KS ci ratio: 6.556319e-02	ci left: 4.003784e-03	ci right 4.276317e-03	k: 3559	n:860000
TMEM200C   860000 perm   451 sec   (1907 perm/sec)   p_kst 4.138372e-03   p_cons 2.470581e-02   p_joint 1.262791e-03

Joint ci ratio: 1.181176e-01	ci left: 1.189672e-03	ci right 1.340117e-03	k: 1099	n:870000
Cons ci ratio: 2.641121e-02	ci left: 2.436916e-02	ci right 2.502252e-02	k: 21484	n:870000
KS ci ratio: 6.526173e-02	ci left: 3.995073e-03	ci right 4.265716e-03	k: 3592	n:870000
TMEM200C   870000 perm   459 sec   (1894 perm/sec)   p_kst 4.128736e-03   p_cons 2.469425e-02   p_joint 1.263218e-03

Joint ci ratio: 1.057475e-01	ci left: 1.476628e-03	ci right 1.642590e-03	k: 1371	n:880000
Cons ci ratio: 2.815725e-02	ci left: 2.124649e-02	ci right 2.185439e-02	k: 18963	n:880000
KS ci ratio: 6.486566e-02	ci left: 3.998862e-03	ci right 4.268055e-03	k: 3636	n:880000
TMEM200C   880000 perm   468 sec   (1880 perm/sec)   p_kst 4.131818e-03   p_cons 2.154886e-02   p_joint 1.557955e-03

Joint ci ratio: 1.053264e-01	ci left: 1.472069e-03	ci right 1.636820e-03	k: 1382	n:890000
Cons ci ratio: 2.800944e-02	ci left: 2.123202e-02	ci right 2.183627e-02	k: 19164	n:890000
KS ci ratio: 6.445914e-02	ci left: 4.004781e-03	ci right 4.272620e-03	k: 3682	n:890000
TMEM200C   890000 perm   477 sec   (1868 perm/sec)   p_kst 4.137079e-03   p_cons 2.153258e-02   p_joint 1.552809e-03

Joint ci ratio: 1.046474e-01	ci left: 1.475188e-03	ci right 1.639158e-03	k: 1400	n:900000
Cons ci ratio: 2.785584e-02	ci left: 2.123002e-02	ci right 2.183084e-02	k: 19376	n:900000
KS ci ratio: 6.416392e-02	ci left: 3.997453e-03	ci right 4.263532e-03	k: 3716	n:900000
TMEM200C   900000 perm   485 sec   (1855 perm/sec)   p_kst 4.128889e-03   p_cons 2.152889e-02   p_joint 1.555556e-03

Joint ci ratio: 1.040917e-01	ci left: 1.475030e-03	ci right 1.638059e-03	k: 1415	n:910000
Cons ci ratio: 2.770620e-02	ci left: 2.122589e-02	ci right 2.182332e-02	k: 19586	n:910000
KS ci ratio: 6.376186e-02	ci left: 4.004348e-03	ci right 4.269154e-03	k: 3763	n:910000
TMEM200C   910000 perm   494 sec   (1842 perm/sec)   p_kst 4.135165e-03   p_cons 2.152308e-02   p_joint 1.554945e-03

Joint ci ratio: 1.059834e-01	ci left: 1.406075e-03	ci right 1.564482e-03	k: 1365	n:920000
Cons ci ratio: 2.755823e-02	ci left: 2.122293e-02	ci right 2.181704e-02	k: 19797	n:920000
KS ci ratio: 6.338397e-02	ci left: 4.008958e-03	ci right 4.272440e-03	k: 3808	n:920000
TMEM200C   920000 perm   503 sec   (1830 perm/sec)   p_kst 4.139130e-03   p_cons 2.151848e-02   p_joint 1.483696e-03

Joint ci ratio: 1.059454e-01	ci left: 1.392002e-03	ci right 1.548764e-03	k: 1366	n:930000
Cons ci ratio: 2.741610e-02	ci left: 2.121471e-02	ci right 2.180548e-02	k: 20003	n:930000
KS ci ratio: 6.308673e-02	ci left: 4.003948e-03	ci right 4.265822e-03	k: 3844	n:930000
TMEM200C   930000 perm   512 sec   (1818 perm/sec)   p_kst 4.133333e-03   p_cons 2.150860e-02   p_joint 1.468817e-03

Joint ci ratio: 1.055603e-01	ci left: 1.387550e-03	ci right 1.543208e-03	k: 1376	n:940000
Cons ci ratio: 2.728029e-02	ci left: 2.120033e-02	ci right 2.178773e-02	k: 20203	n:940000
KS ci ratio: 6.289950e-02	ci left: 3.985434e-03	ci right 4.245295e-03	k: 3867	n:940000
TMEM200C   940000 perm   521 sec   (1805 perm/sec)   p_kst 4.113830e-03   p_cons 2.149255e-02   p_joint 1.463830e-03

Joint ci ratio: 9.971257e-02	ci left: 1.543205e-03	ci right 1.706173e-03	k: 1542	n:950000
Cons ci ratio: 2.713765e-02	ci left: 2.119986e-02	ci right 2.178412e-02	k: 20416	n:950000
KS ci ratio: 6.252863e-02	ci left: 3.991145e-03	ci right 4.249788e-03	k: 3913	n:950000
TMEM200C   950000 perm   530 sec   (1794 perm/sec)   p_kst 4.118947e-03   p_cons 2.149053e-02   p_joint 1.623158e-03

Outputting figure to mutsig2_images.part000000000177/TMEM200C.4_1870_950000_0.0041189_0.021491_0.0016232.png
                gene_name: TMEM200C
               theta_stop: 0.100 
                    nperm: 950000 
                     p_ks: 0.0041 
        ci_ks_bounds_left: 0.0040 
       ci_ks_bounds_right: 0.0042 
                   p_cons: 0.021 
      ci_cons_bounds_left: 0.021 
     ci_cons_bounds_right: 0.022 
                  p_joint: 0.0016 
     ci_joint_bounds_left: 0.0015 
    ci_joint_bounds_right: 0.0017 

Current progress: 25 percent done.
TMEM225
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.456744e-02	ci left: 4.263503e-01	ci right 4.458869e-01	k: 4361	n:10000
Cons ci ratio: 5.375114e-02	ci left: 3.377653e-01	ci right 3.565238e-01	k: 3471	n:10000
KS ci ratio: 4.917035e-02	ci left: 3.789306e-01	ci right 3.981344e-01	k: 3885	n:10000
TMEM225   10000 perm   2 sec   (6564 perm/sec)   p_kst 3.885000e-01   p_cons 3.471000e-01   p_joint 4.361000e-01

Outputting figure to mutsig2_images.part000000000177/TMEM225.4_694_10000_0.3885_0.3471_0.4361.png
                gene_name: TMEM225
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 28 percent done.
TMEM164
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.012706e-01	ci left: 1.236626e-01	ci right 1.369535e-01	k: 1302	n:10000
Cons ci ratio: 3.227721e-02	ci left: 5.862053e-01	ci right 6.055388e-01	k: 5959	n:10000
KS ci ratio: 1.988626e-01	ci left: 3.367125e-02	ci right 4.120130e-02	k: 373	n:10000
TMEM164   10000 perm   2 sec   (6430 perm/sec)   p_kst 3.730000e-02   p_cons 5.959000e-01   p_joint 1.302000e-01

Joint ci ratio: 9.556323e-02	ci left: 7.387984e-02	ci right 8.134352e-02	k: 1551	n:20000
Cons ci ratio: 2.260970e-02	ci left: 5.936226e-01	ci right 6.072482e-01	k: 12009	n:20000
KS ci ratio: 1.446882e-01	ci left: 3.283349e-02	ci right 3.800272e-02	k: 707	n:20000
TMEM164   20000 perm   4 sec   (5694 perm/sec)   p_kst 3.535000e-02   p_cons 6.004500e-01   p_joint 7.755000e-02

Joint ci ratio: 8.326194e-02	ci left: 6.592830e-02	ci right 7.168887e-02	k: 2063	n:30000
Cons ci ratio: 1.851948e-02	ci left: 5.933612e-01	ci right 6.044863e-01	k: 17968	n:30000
KS ci ratio: 1.133043e-01	ci left: 3.618883e-02	ci right 4.056781e-02	k: 1150	n:30000
TMEM164   30000 perm   6 sec   (5377 perm/sec)   p_kst 3.833333e-02   p_cons 5.989333e-01   p_joint 6.876667e-02

Joint ci ratio: 7.334552e-02	ci left: 6.420023e-02	ci right 6.911291e-02	k: 2665	n:40000
Cons ci ratio: 1.598124e-02	ci left: 5.958307e-01	ci right 6.054547e-01	k: 24026	n:40000
KS ci ratio: 9.671361e-02	ci left: 3.753892e-02	ci right 4.137831e-02	k: 1577	n:40000
TMEM164   40000 perm   8 sec   (5182 perm/sec)   p_kst 3.942500e-02   p_cons 6.006500e-01   p_joint 6.662500e-02

Outputting figure to mutsig2_images.part000000000177/TMEM164.3_918_40000_0.039425_0.60065_0.066625.png
                gene_name: TMEM164
               theta_stop: 0.097 
                    nperm: 40000 
                     p_ks: 0.039 
        ci_ks_bounds_left: 0.038 
       ci_ks_bounds_right: 0.041 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.067 
     ci_joint_bounds_left: 0.064 
    ci_joint_bounds_right: 0.069 

Current progress: 31 percent done.
TMEM17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.735622e-02	ci left: 5.141557e-01	ci right 5.338303e-01	k: 5240	n:10000
Cons ci ratio: 7.956843e-02	ci left: 1.874712e-01	ci right 2.031067e-01	k: 1952	n:10000
KS ci ratio: 3.049091e-02	ci left: 6.134166e-01	ci right 6.325117e-01	k: 6230	n:10000
TMEM17   10000 perm   2 sec   (6656 perm/sec)   p_kst 6.230000e-01   p_cons 1.952000e-01   p_joint 5.240000e-01

Outputting figure to mutsig2_images.part000000000177/TMEM17.3_613_10000_0.623_0.1952_0.524.png
                gene_name: TMEM17
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 34 percent done.
TMEM170B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.101469e-02	ci left: 1.819585e-01	ci right 1.974227e-01	k: 1896	n:10000
Cons ci ratio: 6.724969e-02	ci left: 2.449966e-01	ci right 2.621471e-01	k: 2535	n:10000
KS ci ratio: 9.021878e-02	ci left: 1.515885e-01	ci right 1.660108e-01	k: 1587	n:10000
TMEM170B   10000 perm   2 sec   (6587 perm/sec)   p_kst 1.587000e-01   p_cons 2.535000e-01   p_joint 1.896000e-01

Outputting figure to mutsig2_images.part000000000177/TMEM170B.3_411_10000_0.1587_0.2535_0.1896.png
                gene_name: TMEM170B
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 38 percent done.
TMEM176B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.997964e-02	ci left: 7.857354e-01	ci right 8.016931e-01	k: 7938	n:10000
Cons ci ratio: 4.445889e-02	ci left: 4.275470e-01	ci right 4.470895e-01	k: 4373	n:10000
KS ci ratio: 3.133409e-02	ci left: 6.004598e-01	ci right 6.196761e-01	k: 6101	n:10000
TMEM176B   10000 perm   2 sec   (6527 perm/sec)   p_kst 6.101000e-01   p_cons 4.373000e-01   p_joint 7.938000e-01

Outputting figure to mutsig2_images.part000000000177/TMEM176B.3_837_10000_0.6101_0.4373_0.7938.png
                gene_name: TMEM176B
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 41 percent done.
TMEM184A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.259555e-02	ci left: 7.419977e-01	ci right 7.590561e-01	k: 7506	n:10000
Cons ci ratio: 3.693905e-02	ci left: 5.197599e-01	ci right 5.394228e-01	k: 5296	n:10000
KS ci ratio: 3.692423e-02	ci left: 5.199601e-01	ci right 5.396225e-01	k: 5298	n:10000
TMEM184A   10000 perm   2 sec   (6228 perm/sec)   p_kst 5.298000e-01   p_cons 5.296000e-01   p_joint 7.506000e-01

Outputting figure to mutsig2_images.part000000000177/TMEM184A.3_1274_10000_0.5298_0.5296_0.7506.png
                gene_name: TMEM184A
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 44 percent done.
TMEM20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.496648e-03	ci left: 9.610001e-01	ci right 9.683260e-01	k: 9648	n:10000
Cons ci ratio: 5.296607e-02	ci left: 3.444222e-01	ci right 3.632630e-01	k: 3538	n:10000
KS ci ratio: 3.139998e-02	ci left: 5.994557e-01	ci right 6.186808e-01	k: 6091	n:10000
TMEM20   10000 perm   2 sec   (6293 perm/sec)   p_kst 6.091000e-01   p_cons 3.538000e-01   p_joint 9.648000e-01

Outputting figure to mutsig2_images.part000000000177/TMEM20.3_1110_10000_0.6091_0.3538_0.9648.png
                gene_name: TMEM20
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 47 percent done.
TMEM202
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.355230e-01	ci left: 7.194552e-02	ci right 8.250234e-02	k: 771	n:10000
Cons ci ratio: 2.494362e-01	ci left: 2.108956e-02	ci right 2.719198e-02	k: 240	n:10000
KS ci ratio: 3.520321e-02	ci left: 5.436920e-01	ci right 5.632768e-01	k: 5535	n:10000
TMEM202   10000 perm   2 sec   (6575 perm/sec)   p_kst 5.535000e-01   p_cons 2.400000e-02   p_joint 7.710000e-02

Joint ci ratio: 8.333946e-02	ci left: 9.543404e-02	ci right 1.037828e-01	k: 1991	n:20000
Cons ci ratio: 1.779009e-01	ci left: 2.158850e-02	ci right 2.585152e-02	k: 473	n:20000
KS ci ratio: 2.501006e-02	ci left: 5.442749e-01	ci right 5.581102e-01	k: 11024	n:20000
TMEM202   20000 perm   3 sec   (5790 perm/sec)   p_kst 5.512000e-01   p_cons 2.365000e-02   p_joint 9.955000e-02

Joint ci ratio: 5.338016e-02	ci left: 1.482842e-01	ci right 1.564499e-01	k: 4570	n:30000
Cons ci ratio: 1.379758e-01	ci left: 2.438964e-02	ci right 2.803623e-02	k: 785	n:30000
KS ci ratio: 2.029071e-02	ci left: 5.487206e-01	ci right 5.600022e-01	k: 16631	n:30000
TMEM202   30000 perm   6 sec   (5439 perm/sec)   p_kst 5.543667e-01   p_cons 2.616667e-02   p_joint 1.523333e-01

Joint ci ratio: 6.249524e-02	ci left: 8.674452e-02	ci right 9.236523e-02	k: 3581	n:40000
Cons ci ratio: 1.276712e-01	ci left: 2.155318e-02	ci right 2.451662e-02	k: 920	n:40000
KS ci ratio: 1.762468e-02	ci left: 5.480114e-01	ci right 5.577809e-01	k: 22116	n:40000
TMEM202   40000 perm   8 sec   (5255 perm/sec)   p_kst 5.529000e-01   p_cons 2.300000e-02   p_joint 8.952500e-02

Joint ci ratio: 6.244295e-02	ci left: 7.077410e-02	ci right 7.535561e-02	k: 3652	n:50000
Cons ci ratio: 1.156536e-01	ci left: 2.115957e-02	ci right 2.377628e-02	k: 1122	n:50000
KS ci ratio: 1.579600e-02	ci left: 5.475282e-01	ci right 5.562658e-01	k: 27595	n:50000
TMEM202   50000 perm   10 sec   (5109 perm/sec)   p_kst 5.519000e-01   p_cons 2.244000e-02   p_joint 7.304000e-02

Joint ci ratio: 6.364402e-02	ci left: 5.757093e-02	ci right 6.137182e-02	k: 3567	n:60000
Cons ci ratio: 1.062484e-01	ci left: 2.100346e-02	ci right 2.337640e-02	k: 1330	n:60000
KS ci ratio: 1.440763e-02	ci left: 5.483271e-01	ci right 5.563012e-01	k: 33139	n:60000
TMEM202   60000 perm   12 sec   (4886 perm/sec)   p_kst 5.523167e-01   p_cons 2.216667e-02   p_joint 5.945000e-02

Joint ci ratio: 5.304985e-02	ci left: 7.043440e-02	ci right 7.428685e-02	k: 5064	n:70000
Cons ci ratio: 9.865434e-02	ci left: 2.096790e-02	ci right 2.315768e-02	k: 1543	n:70000
KS ci ratio: 1.334938e-02	ci left: 5.482354e-01	ci right 5.556175e-01	k: 38635	n:70000
TMEM202   70000 perm   15 sec   (4791 perm/sec)   p_kst 5.519286e-01   p_cons 2.204286e-02   p_joint 7.234286e-02

Outputting figure to mutsig2_images.part000000000177/TMEM202.3_842_70000_0.55193_0.022043_0.072343.png
                gene_name: TMEM202
               theta_stop: 0.099 
                    nperm: 70000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.022 
      ci_cons_bounds_left: 0.021 
     ci_cons_bounds_right: 0.023 
                  p_joint: 0.072 
     ci_joint_bounds_left: 0.070 
    ci_joint_bounds_right: 0.074 

Current progress: 50 percent done.
TMEM206
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.341162e-03	ci left: 9.624696e-01	ci right 9.696556e-01	k: 9662	n:10000
KS ci ratio: 1.262330e-02	ci left: 9.002141e-01	ci right 9.117481e-01	k: 9061	n:10000
TMEM206   10000 perm   2 sec   (6174 perm/sec)   p_kst 9.061000e-01   p_cons 9.662000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000177/TMEM206.3_1085_10000_0.9061_0.9662_1.png
                gene_name: TMEM206
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 53 percent done.
TMEM38A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.034997e-02	ci left: 9.298868e-01	ci right 9.396581e-01	k: 9349	n:10000
Cons ci ratio: 7.361654e-02	ci left: 2.127026e-01	ci right 2.290604e-01	k: 2208	n:10000
KS ci ratio: 2.217319e-02	ci left: 7.490766e-01	ci right 7.659732e-01	k: 7576	n:10000
TMEM38A   10000 perm   2 sec   (6301 perm/sec)   p_kst 7.576000e-01   p_cons 2.208000e-01   p_joint 9.349000e-01

Outputting figure to mutsig2_images.part000000000177/TMEM38A.3_924_10000_0.7576_0.2208_0.9349.png
                gene_name: TMEM38A
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 56 percent done.
TMEM173
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.425160e-02	ci left: 8.768454e-01	ci right 8.895304e-01	k: 8833	n:10000
Cons ci ratio: 1.834238e-02	ci left: 8.127337e-01	ci right 8.278793e-01	k: 8204	n:10000
KS ci ratio: 3.257287e-02	ci left: 5.817902e-01	ci right 6.011565e-01	k: 5915	n:10000
TMEM173   10000 perm   1 sec   (6693 perm/sec)   p_kst 5.915000e-01   p_cons 8.204000e-01   p_joint 8.833000e-01

Outputting figure to mutsig2_images.part000000000177/TMEM173.2_1164_10000_0.5915_0.8204_0.8833.png
                gene_name: TMEM173
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 59 percent done.
TMEM174
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.581851e-02	ci left: 8.530443e-01	ci right 8.667453e-01	k: 8600	n:10000
Cons ci ratio: 3.033536e-02	ci left: 6.158280e-01	ci right 6.348989e-01	k: 6254	n:10000
KS ci ratio: 2.337403e-02	ci left: 7.289600e-01	ci right 7.463014e-01	k: 7377	n:10000
TMEM174   10000 perm   1 sec   (7124 perm/sec)   p_kst 7.377000e-01   p_cons 6.254000e-01   p_joint 8.600000e-01

Outputting figure to mutsig2_images.part000000000177/TMEM174.2_740_10000_0.7377_0.6254_0.86.png
                gene_name: TMEM174
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 62 percent done.
TMEM175
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.073529e-02	ci left: 9.251327e-01	ci right 9.352150e-01	k: 9303	n:10000
KS ci ratio: 1.358687e-02	ci left: 8.865717e-01	ci right 8.987985e-01	k: 8928	n:10000
TMEM175   10000 perm   2 sec   (6448 perm/sec)   p_kst 8.928000e-01   p_cons 9.303000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000177/TMEM175.2_1555_10000_0.8928_0.9303_1.png
                gene_name: TMEM175
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 66 percent done.
TMEM176A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.084326e-02	ci left: 4.695657e-01	ci right 4.892463e-01	k: 4794	n:10000
Cons ci ratio: 8.795749e-02	ci left: 1.583626e-01	ci right 1.730327e-01	k: 1656	n:10000
KS ci ratio: 2.797670e-02	ci left: 6.531359e-01	ci right 6.717694e-01	k: 6625	n:10000
TMEM176A   10000 perm   1 sec   (6908 perm/sec)   p_kst 6.625000e-01   p_cons 1.656000e-01   p_joint 4.794000e-01

Outputting figure to mutsig2_images.part000000000177/TMEM176A.2_732_10000_0.6625_0.1656_0.4794.png
                gene_name: TMEM176A
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 69 percent done.
TMEM177
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.002437e-02	ci left: 2.301744e-01	ci right 2.469782e-01	k: 2385	n:10000
KS ci ratio: 2.015643e-02	ci left: 7.827953e-01	ci right 7.988349e-01	k: 7909	n:10000
TMEM177   10000 perm   1 sec   (6802 perm/sec)   p_kst 7.909000e-01   p_cons 2.385000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000177/TMEM177.2_940_10000_0.7909_0.2385_1.png
                gene_name: TMEM177
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
TMEM178
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.510420e-01	ci left: 2.080800e-02	ci right 2.687375e-02	k: 237	n:10000
Cons ci ratio: 4.184154e-01	ci left: 6.884481e-03	ci right 1.061018e-02	k: 86	n:10000
KS ci ratio: 7.014019e-02	ci left: 2.295818e-01	ci right 2.463711e-01	k: 2379	n:10000
TMEM178   10000 perm   1 sec   (6719 perm/sec)   p_kst 2.379000e-01   p_cons 8.600000e-03   p_joint 2.370000e-02

Joint ci ratio: 1.869915e-01	ci left: 1.948692e-02	ci right 2.355385e-02	k: 429	n:20000
Cons ci ratio: 3.039027e-01	ci left: 6.997074e-03	ci right 9.548992e-03	k: 164	n:20000
KS ci ratio: 4.948112e-02	ci left: 2.329045e-01	ci right 2.447715e-01	k: 4776	n:20000
TMEM178   20000 perm   3 sec   (5946 perm/sec)   p_kst 2.388000e-01   p_cons 8.200000e-03   p_joint 2.145000e-02

Joint ci ratio: 1.559217e-01	ci left: 1.902257e-02	ci right 2.227119e-02	k: 618	n:30000
Cons ci ratio: 2.552529e-01	ci left: 6.804529e-03	ci right 8.825872e-03	k: 233	n:30000
KS ci ratio: 4.078461e-02	ci left: 2.306084e-01	ci right 2.402429e-01	k: 7062	n:30000
TMEM178   30000 perm   5 sec   (5651 perm/sec)   p_kst 2.354000e-01   p_cons 7.766667e-03   p_joint 2.060000e-02

Joint ci ratio: 1.112580e-01	ci left: 2.842294e-02	ci right 3.179574e-02	k: 1203	n:40000
Cons ci ratio: 2.239687e-01	ci left: 6.748716e-03	ci right 8.473923e-03	k: 303	n:40000
KS ci ratio: 3.526995e-02	ci left: 2.317710e-01	ci right 2.401173e-01	k: 9437	n:40000
TMEM178   40000 perm   7 sec   (5451 perm/sec)   p_kst 2.359250e-01   p_cons 7.575000e-03   p_joint 3.007500e-02

Joint ci ratio: 1.147681e-01	ci left: 2.148998e-02	ci right 2.412583e-02	k: 1139	n:50000
Cons ci ratio: 1.962039e-01	ci left: 7.142690e-03	ci right 8.715247e-03	k: 395	n:50000
KS ci ratio: 3.136812e-02	ci left: 2.342526e-01	ci right 2.417378e-01	k: 11899	n:50000
TMEM178   50000 perm   9 sec   (5296 perm/sec)   p_kst 2.379800e-01   p_cons 7.900000e-03   p_joint 2.278000e-02

Joint ci ratio: 1.052817e-01	ci left: 2.139310e-02	ci right 2.378672e-02	k: 1354	n:60000
Cons ci ratio: 1.797200e-01	ci left: 7.159405e-03	ci right 8.588814e-03	k: 471	n:60000
KS ci ratio: 2.865481e-02	ci left: 2.343315e-01	ci right 2.411605e-01	k: 14264	n:60000
TMEM178   60000 perm   12 sec   (5169 perm/sec)   p_kst 2.377333e-01   p_cons 7.850000e-03   p_joint 2.256667e-02

Joint ci ratio: 6.609674e-02	ci left: 4.625931e-02	ci right 4.943545e-02	k: 3348	n:70000
Cons ci ratio: 1.646889e-01	ci left: 7.367083e-03	ci right 8.702753e-03	k: 561	n:70000
KS ci ratio: 2.655695e-02	ci left: 2.342091e-01	ci right 2.405269e-01	k: 16615	n:70000
TMEM178   70000 perm   14 sec   (5052 perm/sec)   p_kst 2.373571e-01   p_cons 8.014286e-03   p_joint 4.782857e-02

Joint ci ratio: 6.173839e-02	ci left: 4.649192e-02	ci right 4.946597e-02	k: 3837	n:80000
Cons ci ratio: 1.533663e-01	ci left: 7.478491e-03	ci right 8.732575e-03	k: 647	n:80000
KS ci ratio: 2.483208e-02	ci left: 2.345544e-01	ci right 2.404646e-01	k: 19000	n:80000
TMEM178   80000 perm   16 sec   (4946 perm/sec)   p_kst 2.375000e-01   p_cons 8.087500e-03   p_joint 4.796250e-02

Joint ci ratio: 5.808578e-02	ci left: 4.676585e-02	ci right 4.957447e-02	k: 4334	n:90000
Cons ci ratio: 1.455034e-01	ci left: 7.417630e-03	ci right 8.592192e-03	k: 719	n:90000
KS ci ratio: 2.336828e-02	ci left: 2.353978e-01	ci right 2.409747e-01	k: 21436	n:90000
TMEM178   90000 perm   19 sec   (4848 perm/sec)   p_kst 2.381778e-01   p_cons 7.988889e-03   p_joint 4.815556e-02

Joint ci ratio: 5.782935e-02	ci left: 4.265818e-02	ci right 4.520836e-02	k: 4392	n:100000
Cons ci ratio: 1.371751e-01	ci left: 7.544093e-03	ci right 8.664720e-03	k: 809	n:100000
KS ci ratio: 2.213366e-02	ci left: 2.361203e-01	ci right 2.414149e-01	k: 23876	n:100000
TMEM178   100000 perm   21 sec   (4755 perm/sec)   p_kst 2.387600e-01   p_cons 8.090000e-03   p_joint 4.392000e-02

Joint ci ratio: 5.272558e-02	ci left: 4.658254e-02	ci right 4.911409e-02	k: 5262	n:110000
Cons ci ratio: 1.310884e-01	ci left: 7.534781e-03	ci right 8.600492e-03	k: 886	n:110000
KS ci ratio: 2.111086e-02	ci left: 2.361198e-01	ci right 2.411667e-01	k: 26250	n:110000
TMEM178   110000 perm   24 sec   (4669 perm/sec)   p_kst 2.386364e-01   p_cons 8.054545e-03   p_joint 4.783636e-02

Joint ci ratio: 5.034501e-02	ci left: 4.687963e-02	ci right 4.930894e-02	k: 5770	n:120000
Cons ci ratio: 1.243238e-01	ci left: 7.705580e-03	ci right 8.735066e-03	k: 985	n:120000
KS ci ratio: 2.018131e-02	ci left: 2.367802e-01	ci right 2.416157e-01	k: 28703	n:120000
TMEM178   120000 perm   26 sec   (4587 perm/sec)   p_kst 2.391917e-01   p_cons 8.208333e-03   p_joint 4.808333e-02

Joint ci ratio: 4.223230e-02	ci left: 6.083973e-02	ci right 6.347215e-02	k: 8079	n:130000
Cons ci ratio: 1.197956e-01	ci left: 7.679605e-03	ci right 8.665600e-03	k: 1061	n:130000
KS ci ratio: 1.937934e-02	ci left: 2.370670e-01	ci right 2.417138e-01	k: 31120	n:130000
TMEM178   130000 perm   29 sec   (4509 perm/sec)   p_kst 2.393846e-01   p_cons 8.161538e-03   p_joint 6.214615e-02

Joint ci ratio: 3.877282e-02	ci left: 6.672208e-02	ci right 6.936728e-02	k: 9525	n:140000
Cons ci ratio: 1.151688e-01	ci left: 7.734244e-03	ci right 8.686294e-03	k: 1148	n:140000
KS ci ratio: 1.868060e-02	ci left: 2.370313e-01	ci right 2.415080e-01	k: 33497	n:140000
TMEM178   140000 perm   32 sec   (4428 perm/sec)   p_kst 2.392643e-01   p_cons 8.200000e-03   p_joint 6.803571e-02

Joint ci ratio: 3.923338e-02	ci left: 6.117447e-02	ci right 6.362915e-02	k: 9359	n:150000
Cons ci ratio: 1.111305e-01	ci left: 7.769266e-03	ci right 8.689895e-03	k: 1233	n:150000
KS ci ratio: 1.804312e-02	ci left: 2.371891e-01	ci right 2.415143e-01	k: 35902	n:150000
TMEM178   150000 perm   34 sec   (4349 perm/sec)   p_kst 2.393467e-01   p_cons 8.220000e-03   p_joint 6.239333e-02

Joint ci ratio: 3.796323e-02	ci left: 6.128776e-02	ci right 6.366563e-02	k: 9995	n:160000
Cons ci ratio: 1.074892e-01	ci left: 7.800420e-03	ci right 8.692537e-03	k: 1318	n:160000
KS ci ratio: 1.749617e-02	ci left: 2.367188e-01	ci right 2.409032e-01	k: 38209	n:160000
TMEM178   160000 perm   37 sec   (4275 perm/sec)   p_kst 2.388062e-01   p_cons 8.237500e-03   p_joint 6.246875e-02

Joint ci ratio: 4.012466e-02	ci left: 5.209121e-02	ci right 5.422994e-02	k: 9036	n:170000
Cons ci ratio: 1.039973e-01	ci left: 7.856995e-03	ci right 8.724605e-03	k: 1408	n:170000
KS ci ratio: 1.700655e-02	ci left: 2.360827e-01	ci right 2.401380e-01	k: 40478	n:170000
TMEM178   170000 perm   40 sec   (4204 perm/sec)   p_kst 2.381059e-01   p_cons 8.282353e-03   p_joint 5.315294e-02

Joint ci ratio: 2.724584e-02	ci left: 1.017320e-01	ci right 1.045475e-01	k: 18564	n:180000
Cons ci ratio: 1.006221e-01	ci left: 7.940200e-03	ci right 8.786860e-03	k: 1504	n:180000
KS ci ratio: 1.651504e-02	ci left: 2.364108e-01	ci right 2.403532e-01	k: 42908	n:180000
TMEM178   180000 perm   44 sec   (4136 perm/sec)   p_kst 2.383778e-01   p_cons 8.355556e-03   p_joint 1.031333e-01

Joint ci ratio: 3.792278e-02	ci left: 5.223155e-02	ci right 5.425579e-02	k: 10115	n:190000
Cons ci ratio: 9.780223e-02	ci left: 7.973967e-03	ci right 8.799033e-03	k: 1592	n:190000
KS ci ratio: 1.607848e-02	ci left: 2.363752e-01	ci right 2.402118e-01	k: 45275	n:190000
TMEM178   190000 perm   47 sec   (4072 perm/sec)   p_kst 2.382895e-01   p_cons 8.378947e-03   p_joint 5.323684e-02

Outputting figure to mutsig2_images.part000000000177/TMEM178.2_910_190000_0.23829_0.0083789_0.053237.png
                gene_name: TMEM178
               theta_stop: 0.098 
                    nperm: 190000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.0084 
      ci_cons_bounds_left: 0.0080 
     ci_cons_bounds_right: 0.0088 
                  p_joint: 0.053 
     ci_joint_bounds_left: 0.052 
    ci_joint_bounds_right: 0.054 

Current progress: 75 percent done.
TMEM18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.709916e-02	ci left: 1.974200e-01	ci right 2.133520e-01	k: 2053	n:10000
Cons ci ratio: 1.057501e-01	ci left: 1.143760e-01	ci right 1.272458e-01	k: 1207	n:10000
KS ci ratio: 1.189212e-01	ci left: 9.214310e-02	ci right 1.038923e-01	k: 979	n:10000
TMEM18   10000 perm   1 sec   (7265 perm/sec)   p_kst 9.790000e-02   p_cons 1.207000e-01   p_joint 2.053000e-01

Joint ci ratio: 1.115012e-01	ci left: 5.494603e-02	ci right 6.148315e-02	k: 1163	n:20000
Cons ci ratio: 7.545444e-02	ci left: 1.143957e-01	ci right 1.234154e-01	k: 2377	n:20000
KS ci ratio: 8.476450e-02	ci left: 9.249067e-02	ci right 1.007270e-01	k: 1931	n:20000
TMEM18   20000 perm   3 sec   (6423 perm/sec)   p_kst 9.655000e-02   p_cons 1.188500e-01   p_joint 5.815000e-02

Joint ci ratio: 9.145886e-02	ci left: 5.505507e-02	ci right 6.036432e-02	k: 1730	n:30000
Cons ci ratio: 6.150109e-02	ci left: 1.155866e-01	ci right 1.229540e-01	k: 3577	n:30000
KS ci ratio: 6.873877e-02	ci left: 9.442827e-02	ci right 1.011832e-01	k: 2933	n:30000
TMEM18   30000 perm   5 sec   (6086 perm/sec)   p_kst 9.776667e-02   p_cons 1.192333e-01   p_joint 5.766667e-02

Outputting figure to mutsig2_images.part000000000177/TMEM18.2_443_30000_0.097767_0.11923_0.057667.png
                gene_name: TMEM18
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.098 
        ci_ks_bounds_left: 0.094 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.058 
     ci_joint_bounds_left: 0.055 
    ci_joint_bounds_right: 0.060 

Current progress: 78 percent done.
TMEM186
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.984534e-02	ci left: 7.879663e-01	ci right 8.038610e-01	k: 7960	n:10000
Cons ci ratio: 4.463091e-02	ci left: 4.256523e-01	ci right 4.451853e-01	k: 4354	n:10000
KS ci ratio: 1.802429e-02	ci left: 8.179167e-01	ci right 8.328932e-01	k: 8255	n:10000
TMEM186   10000 perm   1 sec   (7145 perm/sec)   p_kst 8.255000e-01   p_cons 4.354000e-01   p_joint 7.960000e-01

Outputting figure to mutsig2_images.part000000000177/TMEM186.2_650_10000_0.8255_0.4354_0.796.png
                gene_name: TMEM186
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 81 percent done.
TMEM25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.695711e-02	ci left: 8.351090e-01	ci right 8.494910e-01	k: 8424	n:10000
KS ci ratio: 6.853489e-02	ci left: 2.379790e-01	ci right 2.549689e-01	k: 2464	n:10000
TMEM25   10000 perm   2 sec   (6651 perm/sec)   p_kst 2.464000e-01   p_cons 8.424000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000177/TMEM25.2_1166_10000_0.2464_0.8424_1.png
                gene_name: TMEM25
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
TMEM27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.831816e-01	ci left: 1.613586e-02	ci right 2.154960e-02	k: 187	n:10000
Cons ci ratio: 1.386620e-01	ci left: 6.884722e-02	ci right 7.920257e-02	k: 739	n:10000
KS ci ratio: 6.000711e-02	ci left: 2.900365e-01	ci right 3.080807e-01	k: 2990	n:10000
TMEM27   10000 perm   1 sec   (6898 perm/sec)   p_kst 2.990000e-01   p_cons 7.390000e-02   p_joint 1.870000e-02

Joint ci ratio: 2.082928e-01	ci left: 1.558582e-02	ci right 1.925640e-02	k: 347	n:20000
Cons ci ratio: 9.999791e-02	ci left: 6.777123e-02	ci right 7.495399e-02	k: 1426	n:20000
KS ci ratio: 4.243159e-02	ci left: 2.927093e-01	ci right 3.054491e-01	k: 5981	n:20000
TMEM27   20000 perm   3 sec   (5981 perm/sec)   p_kst 2.990500e-01   p_cons 7.130000e-02   p_joint 1.735000e-02

Joint ci ratio: 1.684372e-01	ci left: 1.623808e-02	ci right 1.925634e-02	k: 531	n:30000
Cons ci ratio: 8.137254e-02	ci left: 6.887093e-02	ci right 7.474565e-02	k: 2153	n:30000
KS ci ratio: 3.466734e-02	ci left: 2.936234e-01	ci right 3.040156e-01	k: 8964	n:30000
TMEM27   30000 perm   5 sec   (5681 perm/sec)   p_kst 2.988000e-01   p_cons 7.176667e-02   p_joint 1.770000e-02

Joint ci ratio: 6.895654e-02	ci left: 7.216660e-02	ci right 7.734533e-02	k: 2989	n:40000
Cons ci ratio: 7.070995e-02	ci left: 6.882153e-02	ci right 7.389091e-02	k: 2853	n:40000
KS ci ratio: 2.998763e-02	ci left: 2.948144e-01	ci right 3.038148e-01	k: 11972	n:40000
TMEM27   40000 perm   7 sec   (5452 perm/sec)   p_kst 2.993000e-01   p_cons 7.132500e-02   p_joint 7.472500e-02

Outputting figure to mutsig2_images.part000000000177/TMEM27.2_693_40000_0.2993_0.071325_0.074725.png
                gene_name: TMEM27
               theta_stop: 0.071 
                    nperm: 40000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.071 
      ci_cons_bounds_left: 0.069 
     ci_cons_bounds_right: 0.074 
                  p_joint: 0.075 
     ci_joint_bounds_left: 0.072 
    ci_joint_bounds_right: 0.077 

Current progress: 88 percent done.
TMEM37
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.367182e-02	ci left: 8.853423e-01	ci right 8.976286e-01	k: 8916	n:10000
Cons ci ratio: 1.727517e-02	ci left: 8.300197e-01	ci right 8.445832e-01	k: 8374	n:10000
KS ci ratio: 2.779552e-02	ci left: 6.560548e-01	ci right 6.746488e-01	k: 6654	n:10000
TMEM37   10000 perm   1 sec   (6965 perm/sec)   p_kst 6.654000e-01   p_cons 8.374000e-01   p_joint 8.916000e-01

Outputting figure to mutsig2_images.part000000000177/TMEM37.2_581_10000_0.6654_0.8374_0.8916.png
                gene_name: TMEM37
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 91 percent done.
TMEM38B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.580505e-02	ci left: 3.210824e-01	ci right 3.396165e-01	k: 3303	n:10000
Cons ci ratio: 8.002699e-02	ci left: 1.856990e-01	ci right 2.012800e-01	k: 1934	n:10000
KS ci ratio: 3.895970e-02	ci left: 4.931507e-01	ci right 5.128476e-01	k: 5030	n:10000
TMEM38B   10000 perm   1 sec   (7040 perm/sec)   p_kst 5.030000e-01   p_cons 1.934000e-01   p_joint 3.303000e-01

Outputting figure to mutsig2_images.part000000000177/TMEM38B.2_900_10000_0.503_0.1934_0.3303.png
                gene_name: TMEM38B
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 94 percent done.
TMEM39A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.726052e-02	ci left: 6.647131e-01	ci right 6.831855e-01	k: 6740	n:10000
Cons ci ratio: 6.524960e-02	ci left: 2.564684e-01	ci right 2.738686e-01	k: 2651	n:10000
KS ci ratio: 7.050957e-02	ci left: 2.277054e-01	ci right 2.444486e-01	k: 2360	n:10000
TMEM39A   10000 perm   2 sec   (6485 perm/sec)   p_kst 2.360000e-01   p_cons 2.651000e-01   p_joint 6.740000e-01

Outputting figure to mutsig2_images.part000000000177/TMEM39A.2_1499_10000_0.236_0.2651_0.674.png
                gene_name: TMEM39A
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 97 percent done.
TMEM40
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.320071e-02	ci left: 8.921069e-01	ci right 9.040601e-01	k: 8982	n:10000
Cons ci ratio: 9.018502e-02	ci left: 1.516867e-01	ci right 1.661126e-01	k: 1588	n:10000
KS ci ratio: 2.224561e-02	ci left: 7.478628e-01	ci right 7.647876e-01	k: 7564	n:10000
TMEM40   10000 perm   1 sec   (6853 perm/sec)   p_kst 7.564000e-01   p_cons 1.588000e-01   p_joint 8.982000e-01

Outputting figure to mutsig2_images.part000000000177/TMEM40.2_746_10000_0.7564_0.1588_0.8982.png
                gene_name: TMEM40
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000177
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 177 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1532>
Subject: Job 8004638: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1532>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000178> was used as the working directory.
Started at Sun Nov 11 15:22:41 2012
Results reported at Sun Nov 11 15:48:12 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000178.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000178.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 178  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000178.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1727.71 sec.
    Max Memory :      4758 MB
    Max Swap   :      7041 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
178
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 178
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 178: processing genes 16014 - 16104
Calculating significance of each gene.
Using projection method.
16014	TMEM45A	3.064553e-01
16015	TMEM45B	4.006638e-01
16016	TMEM47	2.979320e-01
16017	TMEM48	9.091069e-01
16018	TMEM49	2.844427e-01
16019	TMEM5	2.433716e-01
16020	TMEM50A	1
16021	TMEM50B	1
16022	TMEM51	1
16023	TMEM52	1
16024	TMEM53	5.857916e-01
16025	TMEM54	1
16026	TMEM55A	1
16027	TMEM55B	1
16028	TMEM56	1
16029	TMEM57	1
16030	TMEM59	1
16031	TMEM59L	1
16032	TMEM60	4.381215e-01
16033	TMEM61	6.460633e-01
16034	TMEM62	6.735675e-01
16035	TMEM63A	7.647545e-01
16036	TMEM63B	2.754845e-01
16037	TMEM63C	5.266900e-01
16038	TMEM64	1
16039	TMEM65	1
16040	TMEM66	5.158329e-02
16041	TMEM67	7.815366e-01
16042	TMEM68	1
16043	TMEM69	1
16044	TMEM70	1
16045	TMEM71	2.698391e-01
16046	TMEM72	6.453093e-02
16047	TMEM74	1
16048	TMEM79	1.100791e-01
16049	TMEM80	1
16050	TMEM81	1
16051	TMEM82	7.490250e-01
16052	TMEM85	1
16053	TMEM86A	1
16054	TMEM86B	1
16055	TMEM87A	9.291247e-01
16056	TMEM87B	5.301001e-01
16057	TMEM88	1
16058	TMEM89	1
16059	TMEM8A	1
16060	TMEM8B	3.988538e-01
16061	TMEM8C	1
16062	TMEM9	1
16063	TMEM90A	1.770064e-02
16064	TMEM90B	2.825402e-01
16065	TMEM91	3.397208e-01
16066	TMEM92	1
16067	TMEM93	1
16068	TMEM95	1
16069	TMEM97	8.456162e-02
16070	TMEM98	1
16071	TMEM99	1.791184e-01
16072	TMEM9B	1
16073	TMF1	1
16074	TMIE	1
16075	TMIGD1	6.005190e-01
16076	TMIGD2	9.817573e-02
16077	TMLHE	5.191116e-01
16078	TMOD1	1
16079	TMOD2	4.076146e-01
16080	TMOD3	2.210441e-01
16081	TMOD4	1
16082	TMPO	7.598579e-01
16083	TMPPE	1
16084	TMPRSS11A	5.779627e-01
16085	TMPRSS11B	1
16086	TMPRSS11D	2.983907e-01
16087	TMPRSS11E	1
16088	TMPRSS11F	1.342688e-01
16089	TMPRSS12	4.718796e-02
16090	TMPRSS13	8.344453e-01
16091	TMPRSS15	8.804024e-01
16092	TMPRSS2	8.617677e-01
16093	TMPRSS3	1
16094	TMPRSS4	1
16095	TMPRSS5	3.566019e-02
16096	TMPRSS6	4.304735e-01
16097	TMPRSS7	2.682762e-01
16098	TMPRSS9	1.084248e-01
16099	TMSB10	1
16100	TMSB15A	1
16101	TMSB15B	1
16102	TMSB4X	1
16103	TMSB4Y	1
16104	TMSL3	1
Done

Running MutSig 2:
Scatter job 178: processing genes 16014 - 16104
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
TMPRSS15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.989420e-02	ci left: 7.871550e-01	ci right 8.030727e-01	k: 7952	n:10000
Cons ci ratio: 6.083299e-02	ci left: 2.843880e-01	ci right 3.023325e-01	k: 2933	n:10000
KS ci ratio: 2.064286e-02	ci left: 7.746878e-01	ci right 7.909471e-01	k: 7829	n:10000
TMPRSS15   10000 perm   2 sec   (4212 perm/sec)   p_kst 7.829000e-01   p_cons 2.933000e-01   p_joint 7.952000e-01

Outputting figure to mutsig2_images.part000000000178/TMPRSS15.11_3160_10000_0.7829_0.2933_0.7952.png
                gene_name: TMPRSS15
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 3 percent done.
TMPRSS9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.284434e-01	ci left: 7.970251e-02	ci right 9.074052e-02	k: 851	n:10000
Cons ci ratio: 1.609972e-02	ci left: 8.486593e-01	ci right 8.625329e-01	k: 8557	n:10000
KS ci ratio: 2.911757e-01	ci left: 1.520682e-02	ci right 2.047941e-02	k: 177	n:10000
TMPRSS9   10000 perm   2 sec   (4733 perm/sec)   p_kst 1.770000e-02   p_cons 8.557000e-01   p_joint 8.510000e-02

Joint ci ratio: 1.052995e-01	ci left: 6.137797e-02	ci right 6.824922e-02	k: 1295	n:20000
Cons ci ratio: 1.083852e-02	ci left: 8.626214e-01	ci right 8.720715e-01	k: 17348	n:20000
KS ci ratio: 2.064886e-01	ci left: 1.587048e-02	ci right 1.957164e-02	k: 353	n:20000
TMPRSS9   20000 perm   5 sec   (4203 perm/sec)   p_kst 1.765000e-02   p_cons 8.674000e-01   p_joint 6.475000e-02

Joint ci ratio: 1.008266e-01	ci left: 4.554319e-02	ci right 5.041150e-02	k: 1438	n:30000
Cons ci ratio: 8.848081e-03	ci left: 8.635438e-01	ci right 8.712516e-01	k: 26023	n:30000
KS ci ratio: 1.695765e-01	ci left: 1.601447e-02	ci right 1.901335e-02	k: 524	n:30000
TMPRSS9   30000 perm   7 sec   (4034 perm/sec)   p_kst 1.746667e-02   p_cons 8.674333e-01   p_joint 4.793333e-02

Joint ci ratio: 7.688196e-02	ci left: 5.867404e-02	ci right 6.338994e-02	k: 2440	n:40000
Cons ci ratio: 7.657835e-03	ci left: 8.642141e-01	ci right 8.708824e-01	k: 34703	n:40000
KS ci ratio: 1.502814e-01	ci left: 1.546688e-02	ci right 1.800398e-02	k: 668	n:40000
TMPRSS9   40000 perm   10 sec   (3919 perm/sec)   p_kst 1.670000e-02   p_cons 8.675750e-01   p_joint 6.100000e-02

Joint ci ratio: 6.937589e-02	ci left: 5.793396e-02	ci right 6.211730e-02	k: 3000	n:50000
Cons ci ratio: 6.884296e-03	ci left: 8.633866e-01	ci right 8.693708e-01	k: 43320	n:50000
KS ci ratio: 1.350125e-01	ci left: 1.545955e-02	ci right 1.771708e-02	k: 828	n:50000
TMPRSS9   50000 perm   13 sec   (3822 perm/sec)   p_kst 1.656000e-02   p_cons 8.664000e-01   p_joint 6.000000e-02

Joint ci ratio: 7.235840e-02	ci left: 4.494344e-02	ci right 4.833391e-02	k: 2797	n:60000
Cons ci ratio: 6.294840e-03	ci left: 8.632650e-01	ci right 8.687328e-01	k: 51961	n:60000
KS ci ratio: 1.247757e-01	ci left: 1.517267e-02	ci right 1.720785e-02	k: 970	n:60000
TMPRSS9   60000 perm   16 sec   (3740 perm/sec)   p_kst 1.616667e-02   p_cons 8.660167e-01   p_joint 4.661667e-02

Joint ci ratio: 7.235532e-02	ci left: 3.878489e-02	ci right 4.171052e-02	k: 2816	n:70000
Cons ci ratio: 5.821826e-03	ci left: 8.637133e-01	ci right 8.687706e-01	k: 60638	n:70000
KS ci ratio: 1.154596e-01	ci left: 1.526386e-02	ci right 1.714798e-02	k: 1133	n:70000
TMPRSS9   70000 perm   19 sec   (3667 perm/sec)   p_kst 1.618571e-02   p_cons 8.662571e-01   p_joint 4.022857e-02

Joint ci ratio: 7.143506e-02	ci left: 3.497767e-02	ci right 3.758110e-02	k: 2901	n:80000
Cons ci ratio: 5.442446e-03	ci left: 8.640229e-01	ci right 8.687505e-01	k: 69312	n:80000
KS ci ratio: 1.072481e-01	ci left: 1.554339e-02	ci right 1.731693e-02	k: 1313	n:80000
TMPRSS9   80000 perm   22 sec   (3597 perm/sec)   p_kst 1.641250e-02   p_cons 8.664000e-01   p_joint 3.626250e-02

Joint ci ratio: 6.637224e-02	ci left: 3.607136e-02	ci right 3.855858e-02	k: 3357	n:90000
Cons ci ratio: 5.125017e-03	ci left: 8.644396e-01	ci right 8.688923e-01	k: 78001	n:90000
KS ci ratio: 1.010537e-01	ci left: 1.561279e-02	ci right 1.728525e-02	k: 1479	n:90000
TMPRSS9   90000 perm   25 sec   (3529 perm/sec)   p_kst 1.643333e-02   p_cons 8.666778e-01   p_joint 3.730000e-02

Joint ci ratio: 6.670659e-02	ci left: 3.226539e-02	ci right 3.450178e-02	k: 3337	n:100000
Cons ci ratio: 4.862383e-03	ci left: 8.645374e-01	ci right 8.687613e-01	k: 86666	n:100000
KS ci ratio: 9.555669e-02	ci left: 1.575856e-02	ci right 1.734966e-02	k: 1654	n:100000
TMPRSS9   100000 perm   29 sec   (3469 perm/sec)   p_kst 1.654000e-02   p_cons 8.666600e-01   p_joint 3.337000e-02

Outputting figure to mutsig2_images.part000000000178/TMPRSS9.7_3247_100000_0.01654_0.86666_0.03337.png
                gene_name: TMPRSS9
               theta_stop: 0.096 
                    nperm: 100000 
                     p_ks: 0.017 
        ci_ks_bounds_left: 0.016 
       ci_ks_bounds_right: 0.017 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.033 
     ci_joint_bounds_left: 0.032 
    ci_joint_bounds_right: 0.035 

Current progress: 6 percent done.
TMEM63B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.676571e-02	ci left: 6.727704e-01	ci right 6.911235e-01	k: 6820	n:10000
Cons ci ratio: 2.083700e-02	ci left: 7.714461e-01	ci right 7.877907e-01	k: 7797	n:10000
KS ci ratio: 3.769452e-02	ci left: 5.096532e-01	ci right 5.293355e-01	k: 5195	n:10000
TMEM63B   10000 perm   2 sec   (4756 perm/sec)   p_kst 5.195000e-01   p_cons 7.797000e-01   p_joint 6.820000e-01

Outputting figure to mutsig2_images.part000000000178/TMEM63B.5_2591_10000_0.5195_0.7797_0.682.png
                gene_name: TMEM63B
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 9 percent done.
TMEM90B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.712230e-02	ci left: 3.992419e-01	ci right 4.186112e-01	k: 4089	n:10000
Cons ci ratio: 3.061433e-02	ci left: 6.115078e-01	ci right 6.306216e-01	k: 6211	n:10000
KS ci ratio: 6.990893e-02	ci left: 2.307670e-01	ci right 2.475852e-01	k: 2391	n:10000
TMEM90B   10000 perm   2 sec   (5932 perm/sec)   p_kst 2.391000e-01   p_cons 6.211000e-01   p_joint 4.089000e-01

Outputting figure to mutsig2_images.part000000000178/TMEM90B.5_789_10000_0.2391_0.6211_0.4089.png
                gene_name: TMEM90B
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 12 percent done.
TMEM66
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.263474e-01	ci left: 8.222674e-02	ci right 9.341473e-02	k: 877	n:10000
Cons ci ratio: 1.072191e-01	ci left: 1.115436e-01	ci right 1.242799e-01	k: 1178	n:10000
KS ci ratio: 9.360549e-02	ci left: 1.421718e-01	ci right 1.562332e-01	k: 1491	n:10000
TMEM66   10000 perm   2 sec   (5965 perm/sec)   p_kst 1.491000e-01   p_cons 1.178000e-01   p_joint 8.770000e-02

Joint ci ratio: 7.073902e-02	ci left: 1.283717e-01	ci right 1.378353e-01	k: 2661	n:20000
Cons ci ratio: 7.572576e-02	ci left: 1.136581e-01	ci right 1.226533e-01	k: 2362	n:20000
KS ci ratio: 6.695676e-02	ci left: 1.413795e-01	ci right 1.512236e-01	k: 2925	n:20000
TMEM66   20000 perm   4 sec   (5386 perm/sec)   p_kst 1.462500e-01   p_cons 1.181000e-01   p_joint 1.330500e-01

Outputting figure to mutsig2_images.part000000000178/TMEM66.4_1044_20000_0.14625_0.1181_0.13305.png
                gene_name: TMEM66
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 15 percent done.
TMEM79
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.814967e-02	ci left: 2.400544e-01	ci right 2.570923e-01	k: 2485	n:10000
Cons ci ratio: 4.546661e-02	ci left: 4.165799e-01	ci right 4.360631e-01	k: 4263	n:10000
KS ci ratio: 1.157396e-01	ci left: 9.691393e-02	ci right 1.089185e-01	k: 1028	n:10000
TMEM79   10000 perm   2 sec   (6220 perm/sec)   p_kst 1.028000e-01   p_cons 4.263000e-01   p_joint 2.485000e-01

Joint ci ratio: 4.679891e-02	ci left: 2.535839e-01	ci right 2.657860e-01	k: 5193	n:20000
Cons ci ratio: 3.211652e-02	ci left: 4.199811e-01	ci right 4.337402e-01	k: 8537	n:20000
KS ci ratio: 8.109712e-02	ci left: 1.003422e-01	ci right 1.088731e-01	k: 2091	n:20000
TMEM79   20000 perm   4 sec   (5449 perm/sec)   p_kst 1.045500e-01   p_cons 4.268500e-01   p_joint 2.596500e-01

Outputting figure to mutsig2_images.part000000000178/TMEM79.4_1197_20000_0.10455_0.42685_0.25965.png
                gene_name: TMEM79
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 18 percent done.
TMEM90A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.861344e-01	ci left: 8.233934e-03	ci right 1.225906e-02	k: 101	n:10000
Cons ci ratio: 4.142033e-02	ci left: 4.625744e-01	ci right 4.822417e-01	k: 4724	n:10000
KS ci ratio: 9.791669e-01	ci left: 8.397740e-04	ci right 2.472817e-03	k: 15	n:10000
TMEM90A   10000 perm   2 sec   (5794 perm/sec)   p_kst 1.500000e-03   p_cons 4.724000e-01   p_joint 1.010000e-02

Joint ci ratio: 3.710268e-01	ci left: 4.522436e-03	ci right 6.625242e-03	k: 110	n:20000
Cons ci ratio: 2.909486e-02	ci left: 4.688076e-01	ci right 4.826995e-01	k: 9515	n:20000
KS ci ratio: 7.834903e-01	ci left: 7.690092e-04	ci right 1.784982e-03	k: 24	n:20000
TMEM90A   20000 perm   4 sec   (5102 perm/sec)   p_kst 1.200000e-03   p_cons 4.757500e-01   p_joint 5.500000e-03

Joint ci ratio: 3.281742e-01	ci left: 3.957669e-03	ci right 5.540593e-03	k: 141	n:30000
Cons ci ratio: 2.365592e-02	ci left: 4.722000e-01	ci right 4.835376e-01	k: 14336	n:30000
KS ci ratio: 6.529304e-01	ci left: 8.127564e-04	ci right 1.622181e-03	k: 35	n:30000
TMEM90A   30000 perm   6 sec   (4863 perm/sec)   p_kst 1.166667e-03   p_cons 4.778667e-01   p_joint 4.700000e-03

Joint ci ratio: 4.150515e-01	ci left: 1.764827e-03	ci right 2.709769e-03	k: 88	n:40000
Cons ci ratio: 1.994529e-02	ci left: 4.863391e-01	ci right 4.961621e-01	k: 19650	n:40000
KS ci ratio: 5.596499e-01	ci left: 8.849137e-04	ci right 1.590715e-03	k: 48	n:40000
TMEM90A   40000 perm   8 sec   (4709 perm/sec)   p_kst 1.200000e-03   p_cons 4.912500e-01   p_joint 2.200000e-03

Joint ci ratio: 3.935807e-01	ci left: 1.591500e-03	ci right 2.388100e-03	k: 98	n:50000
Cons ci ratio: 1.781300e-02	ci left: 4.876085e-01	ci right 4.963924e-01	k: 24600	n:50000
KS ci ratio: 5.057610e-01	ci left: 8.983883e-04	ci right 1.521854e-03	k: 59	n:50000
TMEM90A   50000 perm   11 sec   (4518 perm/sec)   p_kst 1.180000e-03   p_cons 4.920000e-01   p_joint 1.960000e-03

Joint ci ratio: 3.936464e-01	ci left: 1.326212e-03	ci right 1.990155e-03	k: 98	n:60000
Cons ci ratio: 1.626702e-02	ci left: 4.878086e-01	ci right 4.958255e-01	k: 29509	n:60000
KS ci ratio: 4.897345e-01	ci left: 8.069402e-04	ci right 1.343209e-03	k: 63	n:60000
TMEM90A   60000 perm   14 sec   (4413 perm/sec)   p_kst 1.050000e-03   p_cons 4.918167e-01   p_joint 1.633333e-03

Joint ci ratio: 3.822631e-01	ci left: 1.214093e-03	ci right 1.799908e-03	k: 104	n:70000
Cons ci ratio: 1.502092e-02	ci left: 4.894181e-01	ci right 4.968396e-01	k: 34519	n:70000
KS ci ratio: 4.464765e-01	ci left: 8.555118e-04	ci right 1.358748e-03	k: 76	n:70000
TMEM90A   70000 perm   16 sec   (4306 perm/sec)   p_kst 1.085714e-03   p_cons 4.931286e-01   p_joint 1.485714e-03

Joint ci ratio: 3.560918e-01	ci left: 1.243801e-03	ci right 1.793369e-03	k: 120	n:80000
Cons ci ratio: 1.406533e-02	ci left: 4.891422e-01	ci right 4.960833e-01	k: 39409	n:80000
KS ci ratio: 4.152854e-01	ci left: 8.823227e-04	ci right 1.355058e-03	k: 88	n:80000
TMEM90A   80000 perm   19 sec   (4205 perm/sec)   p_kst 1.100000e-03   p_cons 4.926125e-01   p_joint 1.500000e-03

Joint ci ratio: 2.521697e-01	ci left: 2.340307e-03	ci right 3.025707e-03	k: 240	n:90000
Cons ci ratio: 1.325421e-02	ci left: 4.895951e-01	ci right 4.961387e-01	k: 44358	n:90000
KS ci ratio: 3.937559e-01	ci left: 8.840983e-04	ci right 1.326849e-03	k: 98	n:90000
TMEM90A   90000 perm   22 sec   (4121 perm/sec)   p_kst 1.088889e-03   p_cons 4.928667e-01   p_joint 2.666667e-03

Joint ci ratio: 2.610379e-01	ci left: 1.956511e-03	ci right 2.552948e-03	k: 224	n:100000
Cons ci ratio: 1.257675e-02	ci left: 4.896566e-01	ci right 4.958638e-01	k: 49276	n:100000
KS ci ratio: 3.701959e-01	ci left: 9.132186e-04	ci right 1.336575e-03	k: 111	n:100000
TMEM90A   100000 perm   25 sec   (4052 perm/sec)   p_kst 1.110000e-03   p_cons 4.927600e-01   p_joint 2.240000e-03

Joint ci ratio: 2.652315e-01	ci left: 1.719178e-03	ci right 2.253081e-03	k: 217	n:110000
Cons ci ratio: 1.200012e-02	ci left: 4.894413e-01	ci right 4.953591e-01	k: 54164	n:110000
KS ci ratio: 3.518263e-01	ci left: 9.294020e-04	ci right 1.334005e-03	k: 123	n:110000
TMEM90A   110000 perm   28 sec   (3963 perm/sec)   p_kst 1.118182e-03   p_cons 4.924000e-01   p_joint 1.972727e-03

Joint ci ratio: 2.560074e-01	ci left: 1.700536e-03	ci right 2.207351e-03	k: 233	n:120000
Cons ci ratio: 1.148657e-02	ci left: 4.896841e-01	ci right 4.953496e-01	k: 59102	n:120000
KS ci ratio: 3.384459e-01	ci left: 9.280642e-04	ci right 1.313366e-03	k: 133	n:120000
TMEM90A   120000 perm   31 sec   (3899 perm/sec)   p_kst 1.108333e-03   p_cons 4.925167e-01   p_joint 1.941667e-03

Joint ci ratio: 2.582474e-01	ci left: 1.540922e-03	ci right 2.004832e-03	k: 229	n:130000
Cons ci ratio: 1.103156e-02	ci left: 4.899940e-01	ci right 4.954371e-01	k: 64053	n:130000
KS ci ratio: 3.188185e-01	ci left: 9.766687e-04	ci right 1.353843e-03	k: 150	n:130000
TMEM90A   130000 perm   34 sec   (3825 perm/sec)   p_kst 1.153846e-03   p_cons 4.927154e-01   p_joint 1.761538e-03

Joint ci ratio: 2.447750e-01	ci left: 1.604879e-03	ci right 2.059009e-03	k: 255	n:140000
Cons ci ratio: 1.063548e-02	ci left: 4.898492e-01	ci right 4.950939e-01	k: 68946	n:140000
KS ci ratio: 3.049906e-01	ci left: 9.990852e-04	ci right 1.364936e-03	k: 164	n:140000
TMEM90A   140000 perm   37 sec   (3765 perm/sec)   p_kst 1.171429e-03   p_cons 4.924714e-01   p_joint 1.821429e-03

Joint ci ratio: 2.487136e-01	ci left: 1.447836e-03	ci right 1.865139e-03	k: 247	n:150000
Cons ci ratio: 1.028537e-02	ci left: 4.894269e-01	ci right 4.944934e-01	k: 73794	n:150000
KS ci ratio: 2.987248e-01	ci left: 9.756106e-04	ci right 1.324134e-03	k: 171	n:150000
TMEM90A   150000 perm   40 sec   (3710 perm/sec)   p_kst 1.140000e-03   p_cons 4.919600e-01   p_joint 1.646667e-03

Joint ci ratio: 2.462526e-01	ci left: 1.386653e-03	ci right 1.781761e-03	k: 252	n:160000
Cons ci ratio: 9.966325e-03	ci left: 4.891287e-01	ci right 4.940341e-01	k: 78653	n:160000
KS ci ratio: 2.920142e-01	ci left: 9.609296e-04	ci right 1.295071e-03	k: 179	n:160000
TMEM90A   160000 perm   44 sec   (3655 perm/sec)   p_kst 1.118750e-03   p_cons 4.915813e-01   p_joint 1.575000e-03

Joint ci ratio: 2.013982e-01	ci left: 1.999625e-03	ci right 2.452912e-03	k: 377	n:170000
Cons ci ratio: 9.672495e-03	ci left: 4.890090e-01	ci right 4.937678e-01	k: 83536	n:170000
KS ci ratio: 2.805552e-01	ci left: 9.863088e-04	ci right 1.313439e-03	k: 194	n:170000
TMEM90A   170000 perm   47 sec   (3601 perm/sec)   p_kst 1.141176e-03   p_cons 4.913882e-01   p_joint 2.217647e-03

Joint ci ratio: 2.099302e-01	ci left: 1.730422e-03	ci right 2.141440e-03	k: 347	n:180000
Cons ci ratio: 9.394954e-03	ci left: 4.893434e-01	ci right 4.939680e-01	k: 88498	n:180000
KS ci ratio: 2.729623e-01	ci left: 9.883850e-04	ci right 1.305811e-03	k: 205	n:180000
TMEM90A   180000 perm   51 sec   (3545 perm/sec)   p_kst 1.138889e-03   p_cons 4.916556e-01   p_joint 1.927778e-03

Joint ci ratio: 2.055495e-01	ci left: 1.714187e-03	ci right 2.111783e-03	k: 362	n:190000
Cons ci ratio: 9.141258e-03	ci left: 4.895759e-01	ci right 4.940770e-01	k: 93447	n:190000
KS ci ratio: 2.678140e-01	ci left: 9.756151e-04	ci right 1.282038e-03	k: 213	n:190000
TMEM90A   190000 perm   54 sec   (3495 perm/sec)   p_kst 1.121053e-03   p_cons 4.918263e-01   p_joint 1.905263e-03

Joint ci ratio: 2.087522e-01	ci left: 1.576318e-03	ci right 1.948361e-03	k: 351	n:200000
Cons ci ratio: 8.908754e-03	ci left: 4.896916e-01	ci right 4.940786e-01	k: 98377	n:200000
KS ci ratio: 2.623556e-01	ci left: 9.688439e-04	ci right 1.265920e-03	k: 222	n:200000
TMEM90A   200000 perm   58 sec   (3445 perm/sec)   p_kst 1.110000e-03   p_cons 4.918850e-01   p_joint 1.755000e-03

Joint ci ratio: 2.050033e-01	ci left: 1.559952e-03	ci right 1.920691e-03	k: 364	n:210000
Cons ci ratio: 8.693133e-03	ci left: 4.897976e-01	ci right 4.940788e-01	k: 103307	n:210000
KS ci ratio: 2.577746e-01	ci left: 9.583198e-04	ci right 1.246213e-03	k: 230	n:210000
TMEM90A   210000 perm   62 sec   (3398 perm/sec)   p_kst 1.095238e-03   p_cons 4.919381e-01   p_joint 1.733333e-03

Joint ci ratio: 2.345349e-01	ci left: 1.119524e-03	ci right 1.421136e-03	k: 278	n:220000
Cons ci ratio: 8.489513e-03	ci left: 4.900679e-01	ci right 4.942505e-01	k: 108275	n:220000
KS ci ratio: 2.523705e-01	ci left: 9.573088e-04	ci right 1.237921e-03	k: 240	n:220000
TMEM90A   220000 perm   66 sec   (3349 perm/sec)   p_kst 1.090909e-03   p_cons 4.921591e-01   p_joint 1.263636e-03

Joint ci ratio: 2.284724e-01	ci left: 1.132286e-03	ci right 1.428339e-03	k: 293	n:230000
Cons ci ratio: 8.298116e-03	ci left: 4.904026e-01	ci right 4.944933e-01	k: 113263	n:230000
KS ci ratio: 2.458263e-01	ci left: 9.686813e-04	ci right 1.244140e-03	k: 253	n:230000
TMEM90A   230000 perm   70 sec   (3302 perm/sec)   p_kst 1.100000e-03   p_cons 4.924478e-01   p_joint 1.273913e-03

Joint ci ratio: 2.235826e-01	ci left: 1.136207e-03	ci right 1.426052e-03	k: 306	n:240000
Cons ci ratio: 8.127633e-03	ci left: 4.901854e-01	ci right 4.941898e-01	k: 118125	n:240000
KS ci ratio: 2.393179e-01	ci left: 9.831088e-04	ci right 1.254171e-03	k: 267	n:240000
TMEM90A   240000 perm   74 sec   (3256 perm/sec)   p_kst 1.112500e-03   p_cons 4.921875e-01   p_joint 1.275000e-03

Joint ci ratio: 2.221441e-01	ci left: 1.105864e-03	ci right 1.385905e-03	k: 310	n:250000
Cons ci ratio: 7.966793e-03	ci left: 4.900144e-01	ci right 4.939378e-01	k: 122994	n:250000
KS ci ratio: 2.324766e-01	ci left: 1.004004e-03	ci right 1.271777e-03	k: 283	n:250000
TMEM90A   250000 perm   78 sec   (3211 perm/sec)   p_kst 1.132000e-03   p_cons 4.919760e-01   p_joint 1.240000e-03

Joint ci ratio: 2.166397e-01	ci left: 1.121489e-03	ci right 1.397514e-03	k: 326	n:260000
Cons ci ratio: 7.819047e-03	ci left: 4.896073e-01	ci right 4.934544e-01	k: 127798	n:260000
KS ci ratio: 2.277152e-01	ci left: 1.008882e-03	ci right 1.271672e-03	k: 295	n:260000
TMEM90A   260000 perm   82 sec   (3168 perm/sec)   p_kst 1.134615e-03   p_cons 4.915308e-01   p_joint 1.253846e-03

Joint ci ratio: 2.130860e-01	ci left: 1.118501e-03	ci right 1.388684e-03	k: 337	n:270000
Cons ci ratio: 7.675007e-03	ci left: 4.895051e-01	ci right 4.932802e-01	k: 132676	n:270000
KS ci ratio: 2.221543e-01	ci left: 1.023943e-03	ci right 1.283252e-03	k: 310	n:270000
TMEM90A   270000 perm   86 sec   (3126 perm/sec)   p_kst 1.148148e-03   p_cons 4.913926e-01   p_joint 1.248148e-03

Joint ci ratio: 2.243359e-01	ci left: 9.671401e-04	ci right 1.214801e-03	k: 304	n:280000
Cons ci ratio: 7.534497e-03	ci left: 4.896859e-01	ci right 4.933929e-01	k: 137631	n:280000
KS ci ratio: 2.200441e-01	ci left: 1.007615e-03	ci right 1.260037e-03	k: 316	n:280000
TMEM90A   280000 perm   91 sec   (3084 perm/sec)   p_kst 1.128571e-03   p_cons 4.915393e-01   p_joint 1.085714e-03

Joint ci ratio: 2.221632e-01	ci left: 9.533224e-04	ci right 1.194758e-03	k: 310	n:290000
Cons ci ratio: 7.400155e-03	ci left: 4.899409e-01	ci right 4.935834e-01	k: 142611	n:290000
KS ci ratio: 2.183314e-01	ci left: 9.891631e-04	ci right 1.234775e-03	k: 321	n:290000
TMEM90A   290000 perm   95 sec   (3043 perm/sec)   p_kst 1.106897e-03   p_cons 4.917621e-01   p_joint 1.068966e-03

Joint ci ratio: 2.207506e-01	ci left: 9.341377e-04	ci right 1.169006e-03	k: 314	n:300000
Cons ci ratio: 7.276727e-03	ci left: 4.899061e-01	ci right 4.934874e-01	k: 147509	n:300000
KS ci ratio: 2.163271e-01	ci left: 9.751016e-04	ci right 1.214704e-03	k: 327	n:300000
TMEM90A   300000 perm   100 sec   (3003 perm/sec)   p_kst 1.090000e-03   p_cons 4.916967e-01   p_joint 1.046667e-03

Joint ci ratio: 2.166618e-01	ci left: 9.405939e-04	ci right 1.172122e-03	k: 326	n:310000
Cons ci ratio: 7.156412e-03	ci left: 4.900741e-01	ci right 4.935970e-01	k: 152469	n:310000
KS ci ratio: 2.106225e-01	ci left: 9.986087e-04	ci right 1.236682e-03	k: 345	n:310000
TMEM90A   310000 perm   105 sec   (2965 perm/sec)   p_kst 1.112903e-03   p_cons 4.918355e-01   p_joint 1.051613e-03

Joint ci ratio: 2.109316e-01	ci left: 9.644403e-04	ci right 1.194748e-03	k: 344	n:320000
Cons ci ratio: 7.042621e-03	ci left: 4.901789e-01	ci right 4.936463e-01	k: 157412	n:320000
KS ci ratio: 2.059137e-01	ci left: 1.014796e-03	ci right 1.250638e-03	k: 361	n:320000
TMEM90A   320000 perm   109 sec   (2926 perm/sec)   p_kst 1.128125e-03   p_cons 4.919125e-01   p_joint 1.075000e-03

Joint ci ratio: 2.082336e-01	ci left: 9.610560e-04	ci right 1.187246e-03	k: 353	n:330000
Cons ci ratio: 6.934554e-03	ci left: 4.902444e-01	ci right 4.936588e-01	k: 162344	n:330000
KS ci ratio: 2.039526e-01	ci left: 1.004167e-03	ci right 1.235040e-03	k: 368	n:330000
TMEM90A   330000 perm   114 sec   (2889 perm/sec)   p_kst 1.115152e-03   p_cons 4.919515e-01   p_joint 1.069697e-03

Joint ci ratio: 2.045116e-01	ci left: 9.690496e-04	ci right 1.192535e-03	k: 366	n:340000
Cons ci ratio: 6.833202e-03	ci left: 4.901682e-01	ci right 4.935320e-01	k: 167229	n:340000
KS ci ratio: 2.009791e-01	ci left: 1.005346e-03	ci right 1.232706e-03	k: 379	n:340000
TMEM90A   340000 perm   119 sec   (2853 perm/sec)   p_kst 1.114706e-03   p_cons 4.918500e-01   p_joint 1.076471e-03

Joint ci ratio: 2.020497e-01	ci left: 9.657677e-04	ci right 1.185484e-03	k: 375	n:350000
Cons ci ratio: 6.736168e-03	ci left: 4.900967e-01	ci right 4.934120e-01	k: 172114	n:350000
KS ci ratio: 1.978787e-01	ci left: 1.009196e-03	ci right 1.233481e-03	k: 391	n:350000
TMEM90A   350000 perm   124 sec   (2818 perm/sec)   p_kst 1.117143e-03   p_cons 4.917543e-01   p_joint 1.071429e-03

Joint ci ratio: 1.994155e-01	ci left: 9.653225e-04	ci right 1.181726e-03	k: 385	n:360000
Cons ci ratio: 6.643080e-03	ci left: 4.900351e-01	ci right 4.933040e-01	k: 177001	n:360000
KS ci ratio: 1.954024e-01	ci left: 1.007573e-03	ci right 1.228362e-03	k: 401	n:360000
TMEM90A   360000 perm   129 sec   (2784 perm/sec)   p_kst 1.113889e-03   p_cons 4.916694e-01   p_joint 1.069444e-03

Joint ci ratio: 1.968817e-01	ci left: 9.649188e-04	ci right 1.178154e-03	k: 395	n:370000
Cons ci ratio: 6.551550e-03	ci left: 4.901446e-01	ci right 4.933690e-01	k: 181950	n:370000
KS ci ratio: 1.925494e-01	ci left: 1.011198e-03	ci right 1.229168e-03	k: 413	n:370000
TMEM90A   370000 perm   134 sec   (2752 perm/sec)   p_kst 1.116216e-03   p_cons 4.917568e-01   p_joint 1.067568e-03

Joint ci ratio: 1.646469e-01	ci left: 1.366834e-03	ci right 1.614552e-03	k: 565	n:380000
Cons ci ratio: 6.465335e-03	ci left: 4.901224e-01	ci right 4.933041e-01	k: 186851	n:380000
KS ci ratio: 1.902655e-01	ci left: 1.009643e-03	ci right 1.224397e-03	k: 423	n:380000
TMEM90A   380000 perm   140 sec   (2718 perm/sec)   p_kst 1.113158e-03   p_cons 4.917132e-01   p_joint 1.486842e-03

Joint ci ratio: 1.684168e-01	ci left: 1.270350e-03	ci right 1.506388e-03	k: 540	n:390000
Cons ci ratio: 6.379916e-03	ci left: 4.902990e-01	ci right 4.934396e-01	k: 191829	n:390000
KS ci ratio: 1.882783e-01	ci left: 1.005738e-03	ci right 1.217172e-03	k: 432	n:390000
TMEM90A   390000 perm   145 sec   (2686 perm/sec)   p_kst 1.107692e-03   p_cons 4.918692e-01   p_joint 1.384615e-03

Joint ci ratio: 1.662790e-01	ci left: 1.272126e-03	ci right 1.505193e-03	k: 554	n:400000
Cons ci ratio: 6.299433e-03	ci left: 4.903370e-01	ci right 4.934381e-01	k: 196755	n:400000
KS ci ratio: 1.859315e-01	ci left: 1.006806e-03	ci right 1.215529e-03	k: 443	n:400000
TMEM90A   400000 perm   151 sec   (2655 perm/sec)   p_kst 1.107500e-03   p_cons 4.918875e-01   p_joint 1.385000e-03

Joint ci ratio: 1.640764e-01	ci left: 1.276172e-03	ci right 1.506577e-03	k: 569	n:410000
Cons ci ratio: 6.225231e-03	ci left: 4.901076e-01	ci right 4.931706e-01	k: 201572	n:410000
KS ci ratio: 1.842794e-01	ci left: 1.000858e-03	ci right 1.206298e-03	k: 451	n:410000
TMEM90A   410000 perm   156 sec   (2625 perm/sec)   p_kst 1.100000e-03   p_cons 4.916390e-01   p_joint 1.387805e-03

Joint ci ratio: 1.622369e-01	ci left: 1.275475e-03	ci right 1.502921e-03	k: 582	n:420000
Cons ci ratio: 6.148753e-03	ci left: 4.902822e-01	ci right 4.933084e-01	k: 206554	n:420000
KS ci ratio: 1.824722e-01	ci left: 9.974725e-04	ci right 1.199988e-03	k: 460	n:420000
TMEM90A   420000 perm   162 sec   (2596 perm/sec)   p_kst 1.095238e-03   p_cons 4.917952e-01   p_joint 1.385714e-03

Joint ci ratio: 1.601890e-01	ci left: 1.279290e-03	ci right 1.504259e-03	k: 597	n:430000
Cons ci ratio: 6.075732e-03	ci left: 4.903907e-01	ci right 4.933815e-01	k: 211511	n:430000
KS ci ratio: 1.805249e-01	ci left: 9.964747e-04	ci right 1.196392e-03	k: 470	n:430000
TMEM90A   430000 perm   167 sec   (2568 perm/sec)   p_kst 1.093023e-03   p_cons 4.918860e-01   p_joint 1.388372e-03

Joint ci ratio: 1.599240e-01	ci left: 1.254577e-03	ci right 1.474801e-03	k: 599	n:440000
Cons ci ratio: 6.004842e-03	ci left: 4.905285e-01	ci right 4.934852e-01	k: 216483	n:440000
KS ci ratio: 1.786387e-01	ci left: 9.955332e-04	ci right 1.192949e-03	k: 480	n:440000
TMEM90A   440000 perm   173 sec   (2540 perm/sec)   p_kst 1.090909e-03   p_cons 4.920068e-01   p_joint 1.361364e-03

Joint ci ratio: 1.719695e-01	ci left: 1.054153e-03	ci right 1.254581e-03	k: 518	n:450000
Cons ci ratio: 5.939835e-03	ci left: 4.903694e-01	ci right 4.932929e-01	k: 221324	n:450000
KS ci ratio: 1.769909e-01	ci left: 9.925199e-04	ci right 1.187329e-03	k: 489	n:450000
TMEM90A   450000 perm   179 sec   (2514 perm/sec)   p_kst 1.086667e-03   p_cons 4.918311e-01   p_joint 1.151111e-03

Joint ci ratio: 1.696955e-01	ci left: 1.060371e-03	ci right 1.259042e-03	k: 532	n:460000
Cons ci ratio: 5.874823e-03	ci left: 4.903934e-01	ci right 4.932850e-01	k: 226246	n:460000
KS ci ratio: 1.753879e-01	ci left: 9.896457e-04	ci right 1.181945e-03	k: 498	n:460000
TMEM90A   460000 perm   185 sec   (2488 perm/sec)   p_kst 1.082609e-03   p_cons 4.918391e-01   p_joint 1.156522e-03

Joint ci ratio: 1.693797e-01	ci left: 1.041884e-03	ci right 1.236690e-03	k: 534	n:470000
Cons ci ratio: 5.812395e-03	ci left: 4.903740e-01	ci right 4.932346e-01	k: 231148	n:470000
KS ci ratio: 1.726410e-01	ci left: 1.001150e-03	ci right 1.192320e-03	k: 514	n:470000
TMEM90A   470000 perm   191 sec   (2462 perm/sec)   p_kst 1.093617e-03   p_cons 4.918043e-01   p_joint 1.136170e-03

Joint ci ratio: 1.844987e-01	ci left: 8.529060e-04	ci right 1.028208e-03	k: 450	n:480000
Cons ci ratio: 5.751771e-03	ci left: 4.903681e-01	ci right 4.931987e-01	k: 236056	n:480000
KS ci ratio: 1.705021e-01	ci left: 1.006213e-03	ci right 1.195725e-03	k: 527	n:480000
TMEM90A   480000 perm   197 sec   (2437 perm/sec)   p_kst 1.097917e-03   p_cons 4.917833e-01   p_joint 9.375000e-04

Joint ci ratio: 1.928091e-01	ci left: 7.616060e-04	ci right 9.260211e-04	k: 412	n:490000
Cons ci ratio: 5.690706e-03	ci left: 4.905645e-01	ci right 4.933662e-01	k: 241063	n:490000
KS ci ratio: 1.681299e-01	ci left: 1.014994e-03	ci right 1.203230e-03	k: 542	n:490000
TMEM90A   490000 perm   203 sec   (2412 perm/sec)   p_kst 1.106122e-03   p_cons 4.919653e-01   p_joint 8.408163e-04

Joint ci ratio: 1.905161e-01	ci left: 7.654144e-04	ci right 9.284591e-04	k: 422	n:500000
Cons ci ratio: 5.633346e-03	ci left: 4.905933e-01	ci right 4.933668e-01	k: 245990	n:500000
KS ci ratio: 1.660030e-01	ci left: 1.021523e-03	ci right 1.208335e-03	k: 556	n:500000
TMEM90A   500000 perm   209 sec   (2387 perm/sec)   p_kst 1.112000e-03   p_cons 4.919800e-01   p_joint 8.440000e-04

Joint ci ratio: 1.902927e-01	ci left: 7.522731e-04	ci right 9.123088e-04	k: 423	n:510000
Cons ci ratio: 5.577380e-03	ci left: 4.906486e-01	ci right 4.933947e-01	k: 250931	n:510000
KS ci ratio: 1.638113e-01	ci left: 1.029692e-03	ci right 1.215266e-03	k: 571	n:510000
TMEM90A   510000 perm   216 sec   (2363 perm/sec)   p_kst 1.119608e-03   p_cons 4.920216e-01   p_joint 8.294118e-04

Joint ci ratio: 1.487017e-01	ci left: 1.235362e-03	ci right 1.435644e-03	k: 693	n:520000
Cons ci ratio: 5.523411e-03	ci left: 4.906691e-01	ci right 4.933887e-01	k: 255855	n:520000
KS ci ratio: 1.619807e-01	ci left: 1.033871e-03	ci right 1.217914e-03	k: 584	n:520000
TMEM90A   520000 perm   222 sec   (2339 perm/sec)   p_kst 1.123077e-03   p_cons 4.920288e-01   p_joint 1.332692e-03

Joint ci ratio: 1.559597e-01	ci left: 1.097708e-03	ci right 1.285172e-03	k: 630	n:530000
Cons ci ratio: 5.471123e-03	ci left: 4.906758e-01	ci right 4.933696e-01	k: 260772	n:530000
KS ci ratio: 1.607492e-01	ci left: 1.030659e-03	ci right 1.212601e-03	k: 593	n:530000
TMEM90A   530000 perm   229 sec   (2316 perm/sec)   p_kst 1.118868e-03   p_cons 4.920226e-01   p_joint 1.188679e-03

Joint ci ratio: 1.547386e-01	ci left: 1.095178e-03	ci right 1.280610e-03	k: 640	n:540000
Cons ci ratio: 5.420795e-03	ci left: 4.906361e-01	ci right 4.933048e-01	k: 265664	n:540000
KS ci ratio: 1.595454e-01	ci left: 1.027572e-03	ci right 1.207479e-03	k: 602	n:540000
TMEM90A   540000 perm   235 sec   (2293 perm/sec)   p_kst 1.114815e-03   p_cons 4.919704e-01   p_joint 1.185185e-03

Joint ci ratio: 1.564603e-01	ci left: 1.050801e-03	ci right 1.230884e-03	k: 626	n:550000
Cons ci ratio: 5.371811e-03	ci left: 4.905997e-01	ci right 4.932440e-01	k: 270557	n:550000
KS ci ratio: 1.583683e-01	ci left: 1.024601e-03	ci right 1.202539e-03	k: 611	n:550000
TMEM90A   550000 perm   242 sec   (2271 perm/sec)   p_kst 1.110909e-03   p_cons 4.919218e-01   p_joint 1.138182e-03

Joint ci ratio: 1.542608e-01	ci left: 1.062930e-03	ci right 1.242295e-03	k: 644	n:560000
Cons ci ratio: 5.323238e-03	ci left: 4.906487e-01	ci right 4.932692e-01	k: 275497	n:560000
KS ci ratio: 1.562127e-01	ci left: 1.035467e-03	ci right 1.212616e-03	k: 628	n:560000
TMEM90A   560000 perm   249 sec   (2249 perm/sec)   p_kst 1.121429e-03   p_cons 4.919589e-01   p_joint 1.150000e-03

Joint ci ratio: 1.527291e-01	ci left: 1.066213e-03	ci right 1.244182e-03	k: 657	n:570000
Cons ci ratio: 5.276384e-03	ci left: 4.906557e-01	ci right 4.932532e-01	k: 280414	n:570000
KS ci ratio: 1.547435e-01	ci left: 1.037535e-03	ci right 1.213213e-03	k: 640	n:570000
TMEM90A   570000 perm   256 sec   (2228 perm/sec)   p_kst 1.122807e-03   p_cons 4.919544e-01   p_joint 1.152632e-03

Joint ci ratio: 1.660158e-01	ci left: 8.806182e-04	ci right 1.041675e-03	k: 556	n:580000
Cons ci ratio: 5.229917e-03	ci left: 4.907419e-01	ci right 4.933168e-01	k: 285377	n:580000
KS ci ratio: 1.524988e-01	ci left: 1.051146e-03	ci right 1.226312e-03	k: 659	n:580000
TMEM90A   580000 perm   263 sec   (2207 perm/sec)   p_kst 1.136207e-03   p_cons 4.920293e-01   p_joint 9.586207e-04

Joint ci ratio: 1.644002e-01	ci left: 8.835658e-04	ci right 1.043433e-03	k: 567	n:590000
Cons ci ratio: 5.184884e-03	ci left: 4.908032e-01	ci right 4.933562e-01	k: 290327	n:590000
KS ci ratio: 1.514699e-01	ci left: 1.048004e-03	ci right 1.221361e-03	k: 668	n:590000
TMEM90A   590000 perm   270 sec   (2186 perm/sec)   p_kst 1.132203e-03   p_cons 4.920797e-01   p_joint 9.610169e-04

Joint ci ratio: 1.626903e-01	ci left: 8.880213e-04	ci right 1.046861e-03	k: 579	n:600000
Cons ci ratio: 5.141354e-03	ci left: 4.908275e-01	ci right 4.933592e-01	k: 295256	n:600000
KS ci ratio: 1.499091e-01	ci left: 1.052991e-03	ci right 1.225217e-03	k: 682	n:600000
TMEM90A   600000 perm   277 sec   (2166 perm/sec)   p_kst 1.136667e-03   p_cons 4.920933e-01   p_joint 9.650000e-04

Joint ci ratio: 1.624116e-01	ci left: 8.766085e-04	ci right 1.033111e-03	k: 581	n:610000
Cons ci ratio: 5.099138e-03	ci left: 4.908282e-01	ci right 4.933390e-01	k: 300171	n:610000
KS ci ratio: 1.494730e-01	ci left: 1.042041e-03	ci right 1.211935e-03	k: 686	n:610000
TMEM90A   610000 perm   284 sec   (2145 perm/sec)   p_kst 1.124590e-03   p_cons 4.920836e-01   p_joint 9.524590e-04

Joint ci ratio: 1.090705e-01	ci left: 1.965611e-03	ci right 2.193921e-03	k: 1288	n:620000
Cons ci ratio: 5.057895e-03	ci left: 4.908338e-01	ci right 4.933243e-01	k: 305089	n:620000
KS ci ratio: 1.481843e-01	ci left: 1.043868e-03	ci right 1.212462e-03	k: 698	n:620000
TMEM90A   620000 perm   292 sec   (2125 perm/sec)   p_kst 1.125806e-03   p_cons 4.920790e-01   p_joint 2.077419e-03

Joint ci ratio: 1.085671e-01	ci left: 1.952939e-03	ci right 2.178663e-03	k: 1300	n:630000
Cons ci ratio: 5.016585e-03	ci left: 4.909441e-01	ci right 4.934147e-01	k: 310073	n:630000
KS ci ratio: 1.473439e-01	ci left: 1.039527e-03	ci right 1.206385e-03	k: 706	n:630000
TMEM90A   630000 perm   299 sec   (2106 perm/sec)   p_kst 1.120635e-03   p_cons 4.921794e-01   p_joint 2.063492e-03

Joint ci ratio: 1.091589e-01	ci left: 1.901142e-03	ci right 2.122155e-03	k: 1286	n:640000
Cons ci ratio: 4.977656e-03	ci left: 4.909119e-01	ci right 4.933631e-01	k: 314968	n:640000
KS ci ratio: 1.458049e-01	ci left: 1.045863e-03	ci right 1.211831e-03	k: 721	n:640000
TMEM90A   640000 perm   307 sec   (2088 perm/sec)   p_kst 1.126562e-03   p_cons 4.921375e-01   p_joint 2.009375e-03

Joint ci ratio: 1.137226e-01	ci left: 1.720829e-03	ci right 1.929805e-03	k: 1185	n:650000
Cons ci ratio: 4.938373e-03	ci left: 4.910070e-01	ci right 4.934392e-01	k: 319945	n:650000
KS ci ratio: 1.447067e-01	ci left: 1.046081e-03	ci right 1.210725e-03	k: 732	n:650000
TMEM90A   650000 perm   314 sec   (2069 perm/sec)   p_kst 1.126154e-03   p_cons 4.922231e-01   p_joint 1.823077e-03

Joint ci ratio: 1.127755e-01	ci left: 1.724201e-03	ci right 1.931726e-03	k: 1205	n:660000
Cons ci ratio: 4.902411e-03	ci left: 4.908538e-01	ci right 4.932675e-01	k: 324760	n:660000
KS ci ratio: 1.434402e-01	ci left: 1.049218e-03	ci right 1.212787e-03	k: 745	n:660000
TMEM90A   660000 perm   322 sec   (2051 perm/sec)   p_kst 1.128788e-03   p_cons 4.920606e-01   p_joint 1.825758e-03

Joint ci ratio: 1.121270e-01	ci left: 1.718774e-03	ci right 1.924378e-03	k: 1219	n:670000
Cons ci ratio: 4.865538e-03	ci left: 4.908783e-01	ci right 4.932740e-01	k: 329691	n:670000
KS ci ratio: 1.427723e-01	ci left: 1.043631e-03	ci right 1.205508e-03	k: 752	n:670000
TMEM90A   670000 perm   329 sec   (2033 perm/sec)   p_kst 1.122388e-03   p_cons 4.920761e-01   p_joint 1.819403e-03

Joint ci ratio: 1.111740e-01	ci left: 1.723518e-03	ci right 1.927822e-03	k: 1240	n:680000
Cons ci ratio: 4.828205e-03	ci left: 4.910346e-01	ci right 4.934126e-01	k: 334712	n:680000
KS ci ratio: 1.415555e-01	ci left: 1.046722e-03	ci right 1.207577e-03	k: 765	n:680000
TMEM90A   680000 perm   337 sec   (2016 perm/sec)   p_kst 1.125000e-03   p_cons 4.922235e-01   p_joint 1.823529e-03

Joint ci ratio: 1.104644e-01	ci left: 1.721085e-03	ci right 1.923714e-03	k: 1256	n:690000
Cons ci ratio: 4.793386e-03	ci left: 4.910124e-01	ci right 4.933731e-01	k: 339613	n:690000
KS ci ratio: 1.405499e-01	ci left: 1.046931e-03	ci right 1.206580e-03	k: 776	n:690000
TMEM90A   690000 perm   345 sec   (1999 perm/sec)   p_kst 1.124638e-03   p_cons 4.921928e-01   p_joint 1.820290e-03

Joint ci ratio: 1.096819e-01	ci left: 1.721505e-03	ci right 1.922654e-03	k: 1274	n:700000
Cons ci ratio: 4.760642e-03	ci left: 4.908510e-01	ci right 4.931948e-01	k: 344416	n:700000
KS ci ratio: 1.393003e-01	ci left: 1.051275e-03	ci right 1.210043e-03	k: 790	n:700000
TMEM90A   700000 perm   353 sec   (1982 perm/sec)   p_kst 1.128571e-03   p_cons 4.920229e-01   p_joint 1.820000e-03

Joint ci ratio: 1.109100e-01	ci left: 1.658906e-03	ci right 1.855054e-03	k: 1246	n:710000
Cons ci ratio: 4.726788e-03	ci left: 4.908815e-01	ci right 4.932087e-01	k: 349352	n:710000
KS ci ratio: 1.386884e-01	ci left: 1.045984e-03	ci right 1.203202e-03	k: 797	n:710000
TMEM90A   710000 perm   361 sec   (1965 perm/sec)   p_kst 1.122535e-03   p_cons 4.920451e-01   p_joint 1.754930e-03

Joint ci ratio: 1.099875e-01	ci left: 1.664227e-03	ci right 1.859261e-03	k: 1267	n:720000
Cons ci ratio: 4.693059e-03	ci left: 4.909737e-01	ci right 4.932847e-01	k: 354333	n:720000
KS ci ratio: 1.377423e-01	ci left: 1.046206e-03	ci right 1.202296e-03	k: 808	n:720000
TMEM90A   720000 perm   370 sec   (1948 perm/sec)   p_kst 1.122222e-03   p_cons 4.921292e-01   p_joint 1.759722e-03

Joint ci ratio: 1.089185e-01	ci left: 1.674739e-03	ci right 1.868975e-03	k: 1292	n:730000
Cons ci ratio: 4.659760e-03	ci left: 4.910936e-01	ci right 4.933887e-01	k: 359336	n:730000
KS ci ratio: 1.366486e-01	ci left: 1.049072e-03	ci right 1.204246e-03	k: 821	n:730000
TMEM90A   730000 perm   378 sec   (1932 perm/sec)   p_kst 1.124658e-03   p_cons 4.922411e-01   p_joint 1.769863e-03

Joint ci ratio: 1.024546e-01	ci left: 1.873148e-03	ci right 2.076728e-03	k: 1460	n:740000
Cons ci ratio: 4.627848e-03	ci left: 4.911360e-01	ci right 4.934154e-01	k: 364284	n:740000
KS ci ratio: 1.352566e-01	ci left: 1.057087e-03	ci right 1.211726e-03	k: 838	n:740000
TMEM90A   740000 perm   386 sec   (1916 perm/sec)   p_kst 1.132432e-03   p_cons 4.922757e-01   p_joint 1.972973e-03

Joint ci ratio: 1.032737e-01	ci left: 1.818293e-03	ci right 2.017586e-03	k: 1437	n:750000
Cons ci ratio: 4.596264e-03	ci left: 4.912119e-01	ci right 4.934761e-01	k: 369258	n:750000
KS ci ratio: 1.342995e-01	ci left: 1.058453e-03	ci right 1.212108e-03	k: 850	n:750000
TMEM90A   750000 perm   395 sec   (1900 perm/sec)   p_kst 1.133333e-03   p_cons 4.923440e-01   p_joint 1.916000e-03

Joint ci ratio: 1.028104e-01	ci left: 1.811032e-03	ci right 2.008585e-03	k: 1450	n:760000
Cons ci ratio: 4.565775e-03	ci left: 4.912359e-01	ci right 4.934852e-01	k: 374194	n:760000
KS ci ratio: 1.333625e-01	ci left: 1.059787e-03	ci right 1.212477e-03	k: 862	n:760000
TMEM90A   760000 perm   403 sec   (1885 perm/sec)   p_kst 1.134211e-03   p_cons 4.923605e-01   p_joint 1.907895e-03

Joint ci ratio: 1.028117e-01	ci left: 1.787511e-03	ci right 1.982501e-03	k: 1450	n:770000
Cons ci ratio: 4.536426e-03	ci left: 4.911996e-01	ci right 4.934342e-01	k: 379084	n:770000
KS ci ratio: 1.325206e-01	ci left: 1.059834e-03	ci right 1.211491e-03	k: 873	n:770000
TMEM90A   770000 perm   412 sec   (1870 perm/sec)   p_kst 1.133766e-03   p_cons 4.923169e-01   p_joint 1.883117e-03

Joint ci ratio: 1.020408e-01	ci left: 1.792077e-03	ci right 1.986011e-03	k: 1472	n:780000
Cons ci ratio: 4.506261e-03	ci left: 4.913168e-01	ci right 4.935371e-01	k: 384093	n:780000
KS ci ratio: 1.314716e-01	ci left: 1.063603e-03	ci right 1.214500e-03	k: 887	n:780000
TMEM90A   780000 perm   420 sec   (1855 perm/sec)   p_kst 1.137179e-03   p_cons 4.924269e-01   p_joint 1.887179e-03

Joint ci ratio: 1.014572e-01	ci left: 1.790364e-03	ci right 1.982938e-03	k: 1489	n:790000
Cons ci ratio: 4.476995e-03	ci left: 4.913970e-01	ci right 4.936031e-01	k: 389075	n:790000
KS ci ratio: 1.308106e-01	ci left: 1.061158e-03	ci right 1.210893e-03	k: 896	n:790000
TMEM90A   790000 perm   429 sec   (1841 perm/sec)   p_kst 1.134177e-03   p_cons 4.925000e-01   p_joint 1.884810e-03

Joint ci ratio: 1.008834e-01	ci left: 1.788696e-03	ci right 1.979939e-03	k: 1506	n:800000
Cons ci ratio: 4.449493e-03	ci left: 4.913401e-01	ci right 4.935324e-01	k: 393949	n:800000
KS ci ratio: 1.300158e-01	ci left: 1.061195e-03	ci right 1.209955e-03	k: 907	n:800000
TMEM90A   800000 perm   438 sec   (1826 perm/sec)   p_kst 1.133750e-03   p_cons 4.924363e-01   p_joint 1.882500e-03

Joint ci ratio: 1.002534e-01	ci left: 1.789481e-03	ci right 1.979542e-03	k: 1525	n:810000
Cons ci ratio: 4.422470e-03	ci left: 4.912872e-01	ci right 4.934659e-01	k: 398825	n:810000
KS ci ratio: 1.289548e-01	ci left: 1.066013e-03	ci right 1.214135e-03	k: 922	n:810000
TMEM90A   810000 perm   447 sec   (1812 perm/sec)   p_kst 1.138272e-03   p_cons 4.923765e-01   p_joint 1.882716e-03

Joint ci ratio: 9.960274e-02	ci left: 1.791438e-03	ci right 1.980401e-03	k: 1545	n:820000
Cons ci ratio: 4.395226e-03	ci left: 4.913161e-01	ci right 4.934815e-01	k: 403767	n:820000
KS ci ratio: 1.279876e-01	ci left: 1.069537e-03	ci right 1.216950e-03	k: 936	n:820000
TMEM90A   820000 perm   456 sec   (1798 perm/sec)   p_kst 1.141463e-03   p_cons 4.923988e-01   p_joint 1.884146e-03

Joint ci ratio: 9.368754e-02	ci left: 2.006186e-03	ci right 2.204544e-03	k: 1746	n:830000
Cons ci ratio: 4.368289e-03	ci left: 4.913660e-01	ci right 4.935183e-01	k: 408727	n:830000
KS ci ratio: 1.275125e-01	ci left: 1.064815e-03	ci right 1.210991e-03	k: 943	n:830000
TMEM90A   830000 perm   465 sec   (1784 perm/sec)   p_kst 1.136145e-03   p_cons 4.924422e-01   p_joint 2.103614e-03

Joint ci ratio: 9.302408e-02	ci left: 2.011370e-03	ci right 2.208756e-03	k: 1771	n:840000
Cons ci ratio: 4.342048e-03	ci left: 4.913910e-01	ci right 4.935305e-01	k: 413667	n:840000
KS ci ratio: 1.267096e-01	ci left: 1.065970e-03	ci right 1.211315e-03	k: 955	n:840000
TMEM90A   840000 perm   474 sec   (1771 perm/sec)   p_kst 1.136905e-03   p_cons 4.924607e-01   p_joint 2.108333e-03

Joint ci ratio: 9.242608e-02	ci left: 2.014138e-03	ci right 2.210456e-03	k: 1794	n:850000
Cons ci ratio: 4.316489e-03	ci left: 4.913907e-01	ci right 4.935175e-01	k: 418586	n:850000
KS ci ratio: 1.259869e-01	ci left: 1.065962e-03	ci right 1.210414e-03	k: 966	n:850000
TMEM90A   850000 perm   484 sec   (1758 perm/sec)   p_kst 1.136471e-03   p_cons 4.924541e-01   p_joint 2.110588e-03

Joint ci ratio: 9.379865e-02	ci left: 1.931657e-03	ci right 2.122885e-03	k: 1742	n:860000
Cons ci ratio: 4.291285e-03	ci left: 4.914010e-01	ci right 4.935154e-01	k: 423514	n:860000
KS ci ratio: 1.248935e-01	ci left: 1.072714e-03	ci right 1.216726e-03	k: 983	n:860000
TMEM90A   860000 perm   493 sec   (1745 perm/sec)   p_kst 1.143023e-03   p_cons 4.924581e-01   p_joint 2.025581e-03

Joint ci ratio: 9.334472e-02	ci left: 1.928537e-03	ci right 2.118482e-03	k: 1759	n:870000
Cons ci ratio: 4.267175e-03	ci left: 4.913340e-01	ci right 4.934362e-01	k: 428375	n:870000
KS ci ratio: 1.242012e-01	ci left: 1.072634e-03	ci right 1.215778e-03	k: 994	n:870000
TMEM90A   870000 perm   503 sec   (1731 perm/sec)   p_kst 1.142529e-03   p_cons 4.923851e-01   p_joint 2.021839e-03

Joint ci ratio: 9.287114e-02	ci left: 1.926600e-03	ci right 2.115339e-03	k: 1777	n:880000
Cons ci ratio: 4.242647e-03	ci left: 4.913651e-01	ci right 4.934554e-01	k: 433321	n:880000
KS ci ratio: 1.237669e-01	ci left: 1.068152e-03	ci right 1.210164e-03	k: 1001	n:880000
TMEM90A   880000 perm   512 sec   (1719 perm/sec)   p_kst 1.137500e-03   p_cons 4.924102e-01   p_joint 2.019318e-03

Joint ci ratio: 9.240469e-02	ci left: 1.924709e-03	ci right 2.112264e-03	k: 1795	n:890000
Cons ci ratio: 4.219295e-03	ci left: 4.913058e-01	ci right 4.933842e-01	k: 438187	n:890000
KS ci ratio: 1.233984e-01	ci left: 1.062684e-03	ci right 1.203517e-03	k: 1007	n:890000
TMEM90A   890000 perm   522 sec   (1706 perm/sec)   p_kst 1.131461e-03   p_cons 4.923449e-01   p_joint 2.016854e-03

Joint ci ratio: 9.202148e-02	ci left: 1.919605e-03	ci right 2.105846e-03	k: 1810	n:900000
Cons ci ratio: 4.196447e-03	ci left: 4.912333e-01	ci right 4.933001e-01	k: 443040	n:900000
KS ci ratio: 1.230331e-01	ci left: 1.057337e-03	ci right 1.197017e-03	k: 1013	n:900000
TMEM90A   900000 perm   532 sec   (1693 perm/sec)   p_kst 1.125556e-03   p_cons 4.922667e-01   p_joint 2.011111e-03

Joint ci ratio: 9.146749e-02	ci left: 1.922132e-03	ci right 2.107435e-03	k: 1832	n:910000
Cons ci ratio: 4.172763e-03	ci left: 4.913064e-01	ci right 4.933618e-01	k: 448024	n:910000
KS ci ratio: 1.221328e-01	ci left: 1.061696e-03	ci right 1.200851e-03	k: 1028	n:910000
TMEM90A   910000 perm   541 sec   (1681 perm/sec)   p_kst 1.129670e-03   p_cons 4.923341e-01   p_joint 2.013187e-03

Joint ci ratio: 9.134375e-02	ci left: 1.906549e-03	ci right 2.090088e-03	k: 1837	n:920000
Cons ci ratio: 4.149737e-03	ci left: 4.913464e-01	ci right 4.933906e-01	k: 452979	n:920000
KS ci ratio: 1.211939e-01	ci left: 1.067018e-03	ci right 1.205719e-03	k: 1044	n:920000
TMEM90A   920000 perm   551 sec   (1669 perm/sec)   p_kst 1.134783e-03   p_cons 4.923685e-01   p_joint 1.996739e-03

Joint ci ratio: 9.228010e-02	ci left: 1.847174e-03	ci right 2.026918e-03	k: 1800	n:930000
Cons ci ratio: 4.127763e-03	ci left: 4.913038e-01	ci right 4.933371e-01	k: 457858	n:930000
KS ci ratio: 1.206183e-01	ci left: 1.065972e-03	ci right 1.203832e-03	k: 1054	n:930000
TMEM90A   930000 perm   561 sec   (1656 perm/sec)   p_kst 1.133333e-03   p_cons 4.923204e-01   p_joint 1.935484e-03

Joint ci ratio: 9.662448e-02	ci left: 1.663399e-03	ci right 1.833312e-03	k: 1642	n:940000
Cons ci ratio: 4.105313e-03	ci left: 4.913622e-01	ci right 4.933846e-01	k: 462831	n:940000
KS ci ratio: 1.199381e-01	ci left: 1.067014e-03	ci right 1.204175e-03	k: 1066	n:940000
TMEM90A   940000 perm   572 sec   (1645 perm/sec)   p_kst 1.134043e-03   p_cons 4.923734e-01   p_joint 1.746809e-03

Joint ci ratio: 9.612847e-02	ci left: 1.663353e-03	ci right 1.832340e-03	k: 1659	n:950000
Cons ci ratio: 4.083630e-03	ci left: 4.913700e-01	ci right 4.933817e-01	k: 467757	n:950000
KS ci ratio: 1.193246e-01	ci left: 1.067015e-03	ci right 1.203424e-03	k: 1077	n:950000
TMEM90A   950000 perm   582 sec   (1633 perm/sec)   p_kst 1.133684e-03   p_cons 4.923758e-01   p_joint 1.746316e-03

Joint ci ratio: 9.575448e-02	ci left: 1.659243e-03	ci right 1.827120e-03	k: 1672	n:960000
Cons ci ratio: 4.062320e-03	ci left: 4.913734e-01	ci right 4.933746e-01	k: 472679	n:960000
KS ci ratio: 1.189942e-01	ci left: 1.061964e-03	ci right 1.197325e-03	k: 1083	n:960000
TMEM90A   960000 perm   592 sec   (1621 perm/sec)   p_kst 1.128125e-03   p_cons 4.923740e-01   p_joint 1.741667e-03

Joint ci ratio: 9.521526e-02	ci left: 1.661257e-03	ci right 1.828339e-03	k: 1691	n:970000
Cons ci ratio: 4.041608e-03	ci left: 4.913438e-01	ci right 4.933346e-01	k: 477569	n:970000
KS ci ratio: 1.182330e-01	ci left: 1.065020e-03	ci right 1.199843e-03	k: 1097	n:970000
TMEM90A   970000 perm   603 sec   (1610 perm/sec)   p_kst 1.130928e-03   p_cons 4.923392e-01   p_joint 1.743299e-03

Joint ci ratio: 9.479611e-02	ci left: 1.659248e-03	ci right 1.825352e-03	k: 1706	n:980000
Cons ci ratio: 4.020388e-03	ci left: 4.914168e-01	ci right 4.933975e-01	k: 482559	n:980000
KS ci ratio: 1.176452e-01	ci left: 1.065046e-03	ci right 1.199155e-03	k: 1108	n:980000
TMEM90A   980000 perm   613 sec   (1599 perm/sec)   p_kst 1.130612e-03   p_cons 4.924071e-01   p_joint 1.740816e-03

Joint ci ratio: 9.416359e-02	ci left: 1.665171e-03	ci right 1.830695e-03	k: 1729	n:990000
Cons ci ratio: 3.999684e-03	ci left: 4.914652e-01	ci right 4.934358e-01	k: 487526	n:990000
KS ci ratio: 1.170138e-01	ci left: 1.066054e-03	ci right 1.199519e-03	k: 1120	n:990000
TMEM90A   990000 perm   624 sec   (1588 perm/sec)   p_kst 1.131313e-03   p_cons 4.924505e-01   p_joint 1.746465e-03

Joint ci ratio: 9.370434e-02	ci left: 1.665120e-03	ci right 1.829787e-03	k: 1746	n:1000000
Cons ci ratio: 3.979656e-03	ci left: 4.914677e-01	ci right 4.934284e-01	k: 492448	n:1000000
KS ci ratio: 1.162897e-01	ci left: 1.068985e-03	ci right 1.201932e-03	k: 1134	n:1000000
TMEM90A   1000000 perm   634 sec   (1577 perm/sec)   p_kst 1.134000e-03   p_cons 4.924480e-01   p_joint 1.746000e-03

Joint ci ratio: 9.304064e-02	ci left: 1.672809e-03	ci right 1.837000e-03	k: 1771	n:1010000
Cons ci ratio: 3.959729e-03	ci left: 4.914948e-01	ci right 4.934458e-01	k: 497395	n:1010000
KS ci ratio: 1.156293e-01	ci left: 1.070899e-03	ci right 1.203276e-03	k: 1147	n:1010000
TMEM90A   1010000 perm   645 sec   (1566 perm/sec)   p_kst 1.135644e-03   p_cons 4.924703e-01   p_joint 1.753465e-03

Joint ci ratio: 9.244239e-02	ci left: 1.678435e-03	ci right 1.842062e-03	k: 1794	n:1020000
Cons ci ratio: 3.941335e-03	ci left: 4.913646e-01	ci right 4.933060e-01	k: 502182	n:1020000
KS ci ratio: 1.149800e-01	ci left: 1.072777e-03	ci right 1.204592e-03	k: 1160	n:1020000
TMEM90A   1020000 perm   656 sec   (1555 perm/sec)   p_kst 1.137255e-03   p_cons 4.923353e-01   p_joint 1.758824e-03

Joint ci ratio: 8.565873e-02	ci left: 1.942189e-03	ci right 2.116941e-03	k: 2089	n:1030000
Cons ci ratio: 3.921838e-03	ci left: 4.914098e-01	ci right 4.933417e-01	k: 507147	n:1030000
KS ci ratio: 1.144881e-01	ci left: 1.071792e-03	ci right 1.202884e-03	k: 1170	n:1030000
TMEM90A   1030000 perm   667 sec   (1545 perm/sec)   p_kst 1.135922e-03   p_cons 4.923757e-01   p_joint 2.028155e-03

Joint ci ratio: 8.005810e-02	ci left: 2.207900e-03	ci right 2.392966e-03	k: 2391	n:1040000
Cons ci ratio: 3.903537e-03	ci left: 4.913377e-01	ci right 4.932604e-01	k: 511991	n:1040000
KS ci ratio: 1.139542e-01	ci left: 1.071761e-03	ci right 1.202197e-03	k: 1181	n:1040000
TMEM90A   1040000 perm   678 sec   (1535 perm/sec)   p_kst 1.135577e-03   p_cons 4.922990e-01   p_joint 2.299038e-03

Joint ci ratio: 8.131214e-02	ci left: 2.118748e-03	ci right 2.299254e-03	k: 2318	n:1050000
Cons ci ratio: 3.884904e-03	ci left: 4.913423e-01	ci right 4.932558e-01	k: 516914	n:1050000
KS ci ratio: 1.134752e-01	ci left: 1.070807e-03	ci right 1.200542e-03	k: 1191	n:1050000
TMEM90A   1050000 perm   689 sec   (1525 perm/sec)   p_kst 1.134286e-03   p_cons 4.922990e-01   p_joint 2.207619e-03

Joint ci ratio: 8.262670e-02	ci left: 2.031299e-03	ci right 2.207288e-03	k: 2245	n:1060000
Cons ci ratio: 3.867112e-03	ci left: 4.912724e-01	ci right 4.931767e-01	k: 521758	n:1060000
KS ci ratio: 1.128145e-01	ci left: 1.073539e-03	ci right 1.202797e-03	k: 1205	n:1060000
TMEM90A   1060000 perm   700 sec   (1515 perm/sec)   p_kst 1.136792e-03   p_cons 4.922245e-01   p_joint 2.117925e-03

Joint ci ratio: 8.233415e-02	ci left: 2.026960e-03	ci right 2.201921e-03	k: 2261	n:1070000
Cons ci ratio: 3.848475e-03	ci left: 4.913448e-01	ci right 4.932403e-01	k: 526753	n:1070000
KS ci ratio: 1.124424e-01	ci left: 1.070772e-03	ci right 1.199243e-03	k: 1213	n:1070000
TMEM90A   1070000 perm   711 sec   (1505 perm/sec)   p_kst 1.133645e-03   p_cons 4.922925e-01   p_joint 2.113084e-03

Joint ci ratio: 8.375694e-02	ci left: 1.939279e-03	ci right 2.109706e-03	k: 2185	n:1080000
Cons ci ratio: 3.831191e-03	ci left: 4.912743e-01	ci right 4.931609e-01	k: 531595	n:1080000
KS ci ratio: 1.119364e-01	ci left: 1.070756e-03	ci right 1.198610e-03	k: 1224	n:1080000
TMEM90A   1080000 perm   722 sec   (1495 perm/sec)   p_kst 1.133333e-03   p_cons 4.922176e-01   p_joint 2.023148e-03

Joint ci ratio: 8.525579e-02	ci left: 1.853232e-03	ci right 2.019157e-03	k: 2109	n:1090000
Cons ci ratio: 3.813571e-03	ci left: 4.912794e-01	ci right 4.931574e-01	k: 536518	n:1090000
KS ci ratio: 1.113471e-01	ci left: 1.072527e-03	ci right 1.199873e-03	k: 1237	n:1090000
TMEM90A   1090000 perm   734 sec   (1485 perm/sec)   p_kst 1.134862e-03   p_cons 4.922183e-01   p_joint 1.934862e-03

Joint ci ratio: 8.481467e-02	ci left: 1.855960e-03	ci right 2.021226e-03	k: 2131	n:1100000
Cons ci ratio: 3.796129e-03	ci left: 4.912926e-01	ci right 4.931620e-01	k: 541450	n:1100000
KS ci ratio: 1.107226e-01	ci left: 1.075150e-03	ci right 1.202045e-03	k: 1251	n:1100000
TMEM90A   1100000 perm   745 sec   (1476 perm/sec)   p_kst 1.137273e-03   p_cons 4.922273e-01   p_joint 1.937273e-03

Joint ci ratio: 8.445894e-02	ci left: 1.855112e-03	ci right 2.019576e-03	k: 2149	n:1110000
Cons ci ratio: 3.778693e-03	ci left: 4.913362e-01	ci right 4.931972e-01	k: 546416	n:1110000
KS ci ratio: 1.103269e-01	ci left: 1.073348e-03	ci right 1.199548e-03	k: 1260	n:1110000
TMEM90A   1110000 perm   757 sec   (1466 perm/sec)   p_kst 1.135135e-03   p_cons 4.922667e-01   p_joint 1.936036e-03

Joint ci ratio: 8.428311e-02	ci left: 1.846415e-03	ci right 2.009750e-03	k: 2158	n:1120000
Cons ci ratio: 3.761858e-03	ci left: 4.913308e-01	ci right 4.931835e-01	k: 551328	n:1120000
KS ci ratio: 1.100656e-01	ci left: 1.068974e-03	ci right 1.194343e-03	k: 1266	n:1120000
TMEM90A   1120000 perm   769 sec   (1457 perm/sec)   p_kst 1.130357e-03   p_cons 4.922571e-01   p_joint 1.926786e-03

Joint ci ratio: 8.383759e-02	ci left: 1.850001e-03	ci right 2.012746e-03	k: 2181	n:1130000
Cons ci ratio: 3.744854e-03	ci left: 4.913778e-01	ci right 4.932222e-01	k: 556299	n:1130000
KS ci ratio: 1.095481e-01	ci left: 1.069842e-03	ci right 1.194685e-03	k: 1278	n:1130000
TMEM90A   1130000 perm   781 sec   (1447 perm/sec)   p_kst 1.130973e-03   p_cons 4.923000e-01   p_joint 1.930088e-03

Joint ci ratio: 8.339906e-02	ci left: 1.853527e-03	ci right 2.015687e-03	k: 2204	n:1140000
Cons ci ratio: 3.728891e-03	ci left: 4.913152e-01	ci right 4.931515e-01	k: 561146	n:1140000
KS ci ratio: 1.089111e-01	ci left: 1.073256e-03	ci right 1.197722e-03	k: 1293	n:1140000
TMEM90A   1140000 perm   792 sec   (1439 perm/sec)   p_kst 1.134211e-03   p_cons 4.922333e-01   p_joint 1.933333e-03

Joint ci ratio: 8.463946e-02	ci left: 1.782923e-03	ci right 1.941342e-03	k: 2140	n:1150000
Cons ci ratio: 3.712432e-03	ci left: 4.913476e-01	ci right 4.931759e-01	k: 566101	n:1150000
KS ci ratio: 1.083680e-01	ci left: 1.074920e-03	ci right 1.198918e-03	k: 1306	n:1150000
TMEM90A   1150000 perm   804 sec   (1430 perm/sec)   p_kst 1.135652e-03   p_cons 4.922617e-01   p_joint 1.860870e-03

Joint ci ratio: 8.432506e-02	ci left: 1.781055e-03	ci right 1.938690e-03	k: 2156	n:1160000
Cons ci ratio: 3.696087e-03	ci left: 4.913933e-01	ci right 4.932137e-01	k: 571072	n:1160000
KS ci ratio: 1.079559e-01	ci left: 1.074041e-03	ci right 1.197437e-03	k: 1316	n:1160000
TMEM90A   1160000 perm   816 sec   (1421 perm/sec)   p_kst 1.134483e-03   p_cons 4.923034e-01   p_joint 1.858621e-03

Joint ci ratio: 8.389817e-02	ci left: 1.784240e-03	ci right 1.941319e-03	k: 2178	n:1170000
Cons ci ratio: 3.680227e-03	ci left: 4.914014e-01	ci right 4.932140e-01	k: 576000	n:1170000
KS ci ratio: 1.073865e-01	ci left: 1.076505e-03	ci right 1.199490e-03	k: 1330	n:1170000
TMEM90A   1170000 perm   829 sec   (1412 perm/sec)   p_kst 1.136752e-03   p_cons 4.923077e-01   p_joint 1.861538e-03

Joint ci ratio: 8.366833e-02	ci left: 1.779076e-03	ci right 1.935250e-03	k: 2190	n:1180000
Cons ci ratio: 3.664593e-03	ci left: 4.914060e-01	ci right 4.932110e-01	k: 580924	n:1180000
KS ci ratio: 1.070654e-01	ci left: 1.073980e-03	ci right 1.196286e-03	k: 1338	n:1180000
TMEM90A   1180000 perm   840 sec   (1404 perm/sec)   p_kst 1.133898e-03   p_cons 4.923085e-01   p_joint 1.855932e-03

Joint ci ratio: 7.811431e-02	ci left: 2.029256e-03	ci right 2.195031e-03	k: 2512	n:1190000
Cons ci ratio: 3.649409e-03	ci left: 4.913761e-01	ci right 4.931735e-01	k: 585807	n:1190000
KS ci ratio: 1.063526e-01	ci left: 1.079677e-03	ci right 1.201763e-03	k: 1356	n:1190000
TMEM90A   1190000 perm   853 sec   (1396 perm/sec)   p_kst 1.139496e-03   p_cons 4.922748e-01   p_joint 2.110924e-03

Joint ci ratio: 7.782074e-02	ci left: 2.027871e-03	ci right 2.192881e-03	k: 2531	n:1200000
Cons ci ratio: 3.634413e-03	ci left: 4.913468e-01	ci right 4.931366e-01	k: 590690	n:1200000
KS ci ratio: 1.060796e-01	ci left: 1.076358e-03	ci right 1.197737e-03	k: 1363	n:1200000
TMEM90A   1200000 perm   865 sec   (1387 perm/sec)   p_kst 1.135833e-03   p_cons 4.922417e-01   p_joint 2.109167e-03

Joint ci ratio: 7.922920e-02	ci left: 1.938998e-03	ci right 2.099764e-03	k: 2442	n:1210000
Cons ci ratio: 3.619120e-03	ci left: 4.913840e-01	ci right 4.931664e-01	k: 595653	n:1210000
KS ci ratio: 1.057314e-01	ci left: 1.074704e-03	ci right 1.195473e-03	k: 1372	n:1210000
TMEM90A   1210000 perm   877 sec   (1379 perm/sec)   p_kst 1.133884e-03   p_cons 4.922752e-01   p_joint 2.018182e-03

Joint ci ratio: 8.071668e-02	ci left: 1.851609e-03	ci right 2.008147e-03	k: 2353	n:1220000
Cons ci ratio: 3.604020e-03	ci left: 4.914207e-01	ci right 4.931958e-01	k: 600616	n:1220000
KS ci ratio: 1.052343e-01	ci left: 1.076269e-03	ci right 1.196611e-03	k: 1385	n:1220000
TMEM90A   1220000 perm   890 sec   (1371 perm/sec)   p_kst 1.135246e-03   p_cons 4.923082e-01   p_joint 1.928689e-03

Joint ci ratio: 7.461346e-02	ci left: 2.155465e-03	ci right 2.323316e-03	k: 2753	n:1230000
Cons ci ratio: 3.589474e-03	ci left: 4.914055e-01	ci right 4.931734e-01	k: 605516	n:1230000
KS ci ratio: 1.047817e-01	ci left: 1.077019e-03	ci right 1.196894e-03	k: 1397	n:1230000
TMEM90A   1230000 perm   902 sec   (1364 perm/sec)   p_kst 1.135772e-03   p_cons 4.922894e-01   p_joint 2.238211e-03

Joint ci ratio: 7.666400e-02	ci left: 2.023353e-03	ci right 2.185439e-03	k: 2608	n:1240000
Cons ci ratio: 3.574653e-03	ci left: 4.914535e-01	ci right 4.932142e-01	k: 610494	n:1240000
KS ci ratio: 1.043719e-01	ci left: 1.076972e-03	ci right 1.196345e-03	k: 1408	n:1240000
TMEM90A   1240000 perm   915 sec   (1356 perm/sec)   p_kst 1.135484e-03   p_cons 4.923339e-01   p_joint 2.103226e-03

Joint ci ratio: 7.638643e-02	ci left: 2.022075e-03	ci right 2.183446e-03	k: 2627	n:1250000
Cons ci ratio: 3.560351e-03	ci left: 4.914536e-01	ci right 4.932072e-01	k: 615413	n:1250000
KS ci ratio: 1.040402e-01	ci left: 1.075369e-03	ci right 1.194162e-03	k: 1417	n:1250000
TMEM90A   1250000 perm   927 sec   (1348 perm/sec)   p_kst 1.133600e-03   p_cons 4.923304e-01   p_joint 2.101600e-03

Joint ci ratio: 8.967423e-02	ci left: 1.446366e-03	ci right 1.582926e-03	k: 1907	n:1260000
Cons ci ratio: 3.635980e-03	ci left: 4.789662e-01	ci right 4.807117e-01	k: 604597	n:1260000
KS ci ratio: 1.036390e-01	ci left: 1.075338e-03	ci right 1.193641e-03	k: 1428	n:1260000
TMEM90A   1260000 perm   940 sec   (1340 perm/sec)   p_kst 1.133333e-03   p_cons 4.798389e-01   p_joint 1.513492e-03

Joint ci ratio: 8.909210e-02	ci left: 1.454223e-03	ci right 1.590586e-03	k: 1932	n:1270000
Cons ci ratio: 3.621062e-03	ci left: 4.790489e-01	ci right 4.807874e-01	k: 609496	n:1270000
KS ci ratio: 1.028854e-01	ci left: 1.082979e-03	ci right 1.201205e-03	k: 1449	n:1270000
TMEM90A   1270000 perm   953 sec   (1333 perm/sec)   p_kst 1.140945e-03   p_cons 4.799181e-01   p_joint 1.521260e-03

Joint ci ratio: 8.858916e-02	ci left: 1.459668e-03	ci right 1.595729e-03	k: 1954	n:1280000
Cons ci ratio: 3.606806e-03	ci left: 4.790639e-01	ci right 4.807956e-01	k: 614310	n:1280000
KS ci ratio: 1.023572e-01	ci left: 1.085936e-03	ci right 1.203839e-03	k: 1464	n:1280000
TMEM90A   1280000 perm   966 sec   (1325 perm/sec)   p_kst 1.143750e-03   p_cons 4.799297e-01   p_joint 1.526562e-03

Joint ci ratio: 8.820643e-02	ci left: 1.461239e-03	ci right 1.596828e-03	k: 1971	n:1290000
Cons ci ratio: 3.592951e-03	ci left: 4.790461e-01	ci right 4.807711e-01	k: 619082	n:1290000
KS ci ratio: 1.019060e-01	ci left: 1.087338e-03	ci right 1.204842e-03	k: 1477	n:1290000
TMEM90A   1290000 perm   979 sec   (1317 perm/sec)   p_kst 1.144961e-03   p_cons 4.799085e-01   p_joint 1.527907e-03

Joint ci ratio: 8.771826e-02	ci left: 1.466550e-03	ci right 1.601840e-03	k: 1993	n:1300000
Cons ci ratio: 3.579371e-03	ci left: 4.790124e-01	ci right 4.807308e-01	k: 623833	n:1300000
KS ci ratio: 1.013926e-01	ci left: 1.090220e-03	ci right 1.207406e-03	k: 1492	n:1300000
TMEM90A   1300000 perm   993 sec   (1310 perm/sec)   p_kst 1.147692e-03   p_cons 4.798715e-01   p_joint 1.533077e-03

Joint ci ratio: 8.865887e-02	ci left: 1.424000e-03	ci right 1.556846e-03	k: 1951	n:1310000
Cons ci ratio: 3.566308e-03	ci left: 4.789281e-01	ci right 4.806399e-01	k: 628517	n:1310000
KS ci ratio: 1.010885e-01	ci left: 1.088593e-03	ci right 1.205233e-03	k: 1501	n:1310000
TMEM90A   1310000 perm   1006 sec   (1302 perm/sec)   p_kst 1.145802e-03   p_cons 4.797840e-01   p_joint 1.489313e-03

Joint ci ratio: 8.845538e-02	ci left: 1.419879e-03	ci right 1.552021e-03	k: 1960	n:1320000
Cons ci ratio: 3.552757e-03	ci left: 4.789338e-01	ci right 4.806391e-01	k: 633318	n:1320000
KS ci ratio: 1.007204e-01	ci left: 1.088470e-03	ci right 1.204646e-03	k: 1512	n:1320000
TMEM90A   1320000 perm   1019 sec   (1295 perm/sec)   p_kst 1.145455e-03   p_cons 4.797864e-01   p_joint 1.484848e-03

Joint ci ratio: 8.369625e-02	ci left: 1.577685e-03	ci right 1.716229e-03	k: 2189	n:1330000
Cons ci ratio: 3.539423e-03	ci left: 4.789303e-01	ci right 4.806292e-01	k: 638107	n:1330000
KS ci ratio: 1.002575e-01	ci left: 1.090547e-03	ci right 1.206379e-03	k: 1526	n:1330000
TMEM90A   1330000 perm   1033 sec   (1288 perm/sec)   p_kst 1.147368e-03   p_cons 4.797797e-01   p_joint 1.645865e-03

Joint ci ratio: 8.362031e-02	ci left: 1.568834e-03	ci right 1.706469e-03	k: 2193	n:1340000
Cons ci ratio: 3.525653e-03	ci left: 4.790098e-01	ci right 4.807023e-01	k: 643007	n:1340000
KS ci ratio: 9.983340e-02	ci left: 1.091868e-03	ci right 1.207321e-03	k: 1539	n:1340000
TMEM90A   1340000 perm   1047 sec   (1280 perm/sec)   p_kst 1.148507e-03   p_cons 4.798560e-01   p_joint 1.636567e-03

Outputting figure to mutsig2_images.part000000000178/TMEM90A.4_729_1340000_0.0011485_0.47986_0.0016366.png
                gene_name: TMEM90A
               theta_stop: 0.100 
                    nperm: 1340000 
                     p_ks: 0.0011 
        ci_ks_bounds_left: 0.0011 
       ci_ks_bounds_right: 0.0012 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.0016 
     ci_joint_bounds_left: 0.0016 
    ci_joint_bounds_right: 0.0017 

Current progress: 21 percent done.
TMPRSS11F
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.537790e-02	ci left: 1.375651e-01	ci right 1.514427e-01	k: 1444	n:10000
Cons ci ratio: 4.087600e-02	ci left: 4.691661e-01	ci right 4.888461e-01	k: 4790	n:10000
KS ci ratio: 9.952147e-02	ci left: 1.275764e-01	ci right 1.410375e-01	k: 1342	n:10000
TMPRSS11F   10000 perm   2 sec   (6193 perm/sec)   p_kst 1.342000e-01   p_cons 4.790000e-01   p_joint 1.444000e-01

Outputting figure to mutsig2_images.part000000000178/TMPRSS11F.4_1357_10000_0.1342_0.479_0.1444.png
                gene_name: TMPRSS11F
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 24 percent done.
TMPRSS5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.147777e-02	ci left: 9.156427e-01	ci right 9.263105e-01	k: 9211	n:10000
KS ci ratio: 2.745920e-02	ci left: 6.614910e-01	ci right 6.800095e-01	k: 6708	n:10000
TMPRSS5   10000 perm   2 sec   (5825 perm/sec)   p_kst 6.708000e-01   p_cons 9.211000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000178/TMPRSS5.4_1426_10000_0.6708_0.9211_1.png
                gene_name: TMPRSS5
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 26 percent done.
TMPRSS6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.653156e-02	ci left: 6.765988e-01	ci right 6.948929e-01	k: 6858	n:10000
Cons ci ratio: 5.059670e-02	ci left: 3.654989e-01	ci right 3.845739e-01	k: 3750	n:10000
KS ci ratio: 3.576213e-02	ci left: 5.358791e-01	ci right 5.554943e-01	k: 5457	n:10000
TMPRSS6   10000 perm   2 sec   (5020 perm/sec)   p_kst 5.457000e-01   p_cons 3.750000e-01   p_joint 6.858000e-01

Outputting figure to mutsig2_images.part000000000178/TMPRSS6.4_2508_10000_0.5457_0.375_0.6858.png
                gene_name: TMPRSS6
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.69 

Current progress: 29 percent done.
TMPRSS7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.383989e-02	ci left: 2.649783e-01	ci right 2.825537e-01	k: 2737	n:10000
Cons ci ratio: 1.098228e-01	ci left: 1.067607e-01	ci right 1.192658e-01	k: 1129	n:10000
KS ci ratio: 4.017026e-02	ci left: 4.778579e-01	ci right 4.975492e-01	k: 4877	n:10000
TMPRSS7   10000 perm   2 sec   (5260 perm/sec)   p_kst 4.877000e-01   p_cons 1.129000e-01   p_joint 2.737000e-01

Joint ci ratio: 5.614801e-02	ci left: 1.904190e-01	ci right 2.014696e-01	k: 3918	n:20000
Cons ci ratio: 7.900420e-02	ci left: 1.052534e-01	ci right 1.139605e-01	k: 2191	n:20000
KS ci ratio: 2.871557e-02	ci left: 4.753528e-01	ci right 4.892523e-01	k: 9646	n:20000
TMPRSS7   20000 perm   4 sec   (4698 perm/sec)   p_kst 4.823000e-01   p_cons 1.095500e-01   p_joint 1.959000e-01

Outputting figure to mutsig2_images.part000000000178/TMPRSS7.4_2214_20000_0.4823_0.10955_0.1959.png
                gene_name: TMPRSS7
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 32 percent done.
TMEM5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.057425e-02	ci left: 4.728623e-01	ci right 4.925478e-01	k: 4827	n:10000
Cons ci ratio: 3.134068e-02	ci left: 6.003594e-01	ci right 6.195765e-01	k: 6100	n:10000
KS ci ratio: 6.859028e-02	ci left: 2.376826e-01	ci right 2.546655e-01	k: 2461	n:10000
TMEM5   10000 perm   2 sec   (6585 perm/sec)   p_kst 2.461000e-01   p_cons 6.100000e-01   p_joint 4.827000e-01

Outputting figure to mutsig2_images.part000000000178/TMEM5.3_1356_10000_0.2461_0.61_0.4827.png
                gene_name: TMEM5
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 35 percent done.
TMEM63C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.770386e-02	ci left: 1.591483e-01	ci right 1.738466e-01	k: 1664	n:10000
Cons ci ratio: 4.697642e-02	ci left: 4.007361e-01	ci right 4.201161e-01	k: 4104	n:10000
KS ci ratio: 1.209147e-01	ci left: 8.932164e-02	ci right 1.009155e-01	k: 950	n:10000
TMEM63C   10000 perm   2 sec   (5184 perm/sec)   p_kst 9.500000e-02   p_cons 4.104000e-01   p_joint 1.664000e-01

Joint ci ratio: 5.236731e-02	ci left: 2.130864e-01	ci right 2.245954e-01	k: 4376	n:20000
Cons ci ratio: 3.416158e-02	ci left: 3.901596e-01	ci right 4.037703e-01	k: 7939	n:20000
KS ci ratio: 8.906518e-02	ci left: 8.435383e-02	ci right 9.226634e-02	k: 1765	n:20000
TMEM63C   20000 perm   4 sec   (4692 perm/sec)   p_kst 8.825000e-02   p_cons 3.969500e-01   p_joint 2.188000e-01

Outputting figure to mutsig2_images.part000000000178/TMEM63C.3_2509_20000_0.08825_0.39695_0.2188.png
                gene_name: TMEM63C
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.088 
        ci_ks_bounds_left: 0.084 
       ci_ks_bounds_right: 0.092 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 38 percent done.
TMEM67
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.288380e-02	ci left: 5.771752e-01	ci right 5.965742e-01	k: 5869	n:10000
KS ci ratio: 2.881942e-02	ci left: 6.396537e-01	ci right 6.584594e-01	k: 6491	n:10000
TMEM67   10000 perm   2 sec   (4931 perm/sec)   p_kst 6.491000e-01   p_cons 5.869000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000178/TMEM67.3_3238_10000_0.6491_0.5869_1.png
                gene_name: TMEM67
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 41 percent done.
TMEM72
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.103901e-02	ci left: 2.830009e-01	ci right 3.009204e-01	k: 2919	n:10000
Cons ci ratio: 1.999762e-01	ci left: 3.329057e-02	ci right 4.078224e-02	k: 369	n:10000
KS ci ratio: 1.146988e-02	ci left: 9.157457e-01	ci right 9.264074e-01	k: 9212	n:10000
TMEM72   10000 perm   2 sec   (6265 perm/sec)   p_kst 9.212000e-01   p_cons 3.690000e-02   p_joint 2.919000e-01

Joint ci ratio: 5.602359e-02	ci left: 1.911114e-01	ci right 2.021769e-01	k: 3932	n:20000
Cons ci ratio: 1.273938e-01	ci left: 4.231371e-02	ci right 4.811944e-02	k: 903	n:20000
KS ci ratio: 8.108688e-03	ci left: 9.173795e-01	ci right 9.248976e-01	k: 18424	n:20000
TMEM72   20000 perm   4 sec   (5497 perm/sec)   p_kst 9.212000e-01   p_cons 4.515000e-02   p_joint 1.966000e-01

Joint ci ratio: 4.583758e-02	ci left: 1.914879e-01	ci right 2.005044e-01	k: 5879	n:30000
Cons ci ratio: 1.122936e-01	ci left: 3.683738e-02	ci right 4.125246e-02	k: 1170	n:30000
KS ci ratio: 6.533243e-03	ci left: 9.200273e-01	ci right 9.260905e-01	k: 27693	n:30000
TMEM72   30000 perm   6 sec   (5223 perm/sec)   p_kst 9.231000e-01   p_cons 3.900000e-02   p_joint 1.959667e-01

Joint ci ratio: 3.457741e-02	ci left: 2.389523e-01	ci right 2.473850e-01	k: 9726	n:40000
Cons ci ratio: 9.739023e-02	ci left: 3.702618e-02	ci right 4.084113e-02	k: 1556	n:40000
KS ci ratio: 5.628809e-03	ci left: 9.211819e-01	ci right 9.264063e-01	k: 36953	n:40000
TMEM72   40000 perm   8 sec   (5040 perm/sec)   p_kst 9.238250e-01   p_cons 3.890000e-02   p_joint 2.431500e-01

Outputting figure to mutsig2_images.part000000000178/TMEM72.3_848_40000_0.92383_0.0389_0.24315.png
                gene_name: TMEM72
               theta_stop: 0.097 
                    nperm: 40000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.039 
      ci_cons_bounds_left: 0.037 
     ci_cons_bounds_right: 0.041 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 44 percent done.
TMEM8B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.487901e-01	ci left: 6.005239e-02	ci right 6.980294e-02	k: 648	n:10000
Cons ci ratio: 1.613966e-01	ci left: 5.118874e-02	ci right 6.027224e-02	k: 556	n:10000
KS ci ratio: 1.350497e-01	ci left: 7.242987e-02	ci right 8.301768e-02	k: 776	n:10000
TMEM8B   10000 perm   2 sec   (5641 perm/sec)   p_kst 7.760000e-02   p_cons 5.560000e-02   p_joint 6.480000e-02

Joint ci ratio: 9.610131e-02	ci left: 7.309752e-02	ci right 8.052607e-02	k: 1535	n:20000
Cons ci ratio: 1.120645e-01	ci left: 5.441054e-02	ci right 6.091881e-02	k: 1152	n:20000
KS ci ratio: 9.330090e-02	ci left: 7.730380e-02	ci right 8.491851e-02	k: 1621	n:20000
TMEM8B   20000 perm   4 sec   (4992 perm/sec)   p_kst 8.105000e-02   p_cons 5.760000e-02   p_joint 7.675000e-02

Joint ci ratio: 1.275976e-01	ci left: 2.855075e-02	ci right 3.247421e-02	k: 914	n:30000
Cons ci ratio: 9.309663e-02	ci left: 5.319646e-02	ci right 5.842331e-02	k: 1673	n:30000
KS ci ratio: 7.692256e-02	ci left: 7.659400e-02	ci right 8.275436e-02	k: 2389	n:30000
TMEM8B   30000 perm   6 sec   (4745 perm/sec)   p_kst 7.963333e-02   p_cons 5.576667e-02   p_joint 3.046667e-02

Joint ci ratio: 1.128131e-01	ci left: 2.764472e-02	ci right 3.097408e-02	k: 1171	n:40000
Cons ci ratio: 8.068178e-02	ci left: 5.347231e-02	ci right 5.799246e-02	k: 2228	n:40000
KS ci ratio: 6.703707e-02	ci left: 7.610397e-02	ci right 8.140738e-02	k: 3149	n:40000
TMEM8B   40000 perm   9 sec   (4594 perm/sec)   p_kst 7.872500e-02   p_cons 5.570000e-02   p_joint 2.927500e-02

Joint ci ratio: 1.002357e-01	ci left: 2.819036e-02	ci right 3.118458e-02	k: 1483	n:50000
Cons ci ratio: 7.154419e-02	ci left: 5.461001e-02	ci right 5.868166e-02	k: 2831	n:50000
KS ci ratio: 5.996404e-02	ci left: 7.637402e-02	ci right 8.111503e-02	k: 3936	n:50000
TMEM8B   50000 perm   11 sec   (4470 perm/sec)   p_kst 7.872000e-02   p_cons 5.662000e-02   p_joint 2.966000e-02

Joint ci ratio: 9.830538e-02	ci left: 2.454610e-02	ci right 2.710005e-02	k: 1548	n:60000
Cons ci ratio: 6.582974e-02	ci left: 5.396015e-02	ci right 5.764963e-02	k: 3347	n:60000
KS ci ratio: 5.502063e-02	ci left: 7.584988e-02	ci right 8.015771e-02	k: 4679	n:60000
TMEM8B   60000 perm   14 sec   (4354 perm/sec)   p_kst 7.798333e-02   p_cons 5.578333e-02   p_joint 2.580000e-02

Outputting figure to mutsig2_images.part000000000178/TMEM8B.3_1649_60000_0.077983_0.055783_0.0258.png
                gene_name: TMEM8B
               theta_stop: 0.098 
                    nperm: 60000 
                     p_ks: 0.078 
        ci_ks_bounds_left: 0.076 
       ci_ks_bounds_right: 0.080 
                   p_cons: 0.056 
      ci_cons_bounds_left: 0.054 
     ci_cons_bounds_right: 0.058 
                  p_joint: 0.026 
     ci_joint_bounds_left: 0.025 
    ci_joint_bounds_right: 0.027 

Current progress: 47 percent done.
TMF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.115659e-02	ci left: 6.031711e-01	ci right 6.223632e-01	k: 6128	n:10000
KS ci ratio: 3.626257e-02	ci left: 5.289696e-01	ci right 5.486078e-01	k: 5388	n:10000
TMF1   10000 perm   2 sec   (4429 perm/sec)   p_kst 5.388000e-01   p_cons 6.128000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000178/TMF1.3_3350_10000_0.5388_0.6128_1.png
                gene_name: TMF1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
TMIGD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.380558e-02	ci left: 4.348278e-01	ci right 4.544044e-01	k: 4446	n:10000
Cons ci ratio: 6.540060e-02	ci left: 2.555781e-01	ci right 2.729595e-01	k: 2642	n:10000
KS ci ratio: 5.259752e-02	ci left: 3.476023e-01	ci right 3.664811e-01	k: 3570	n:10000
TMIGD2   10000 perm   2 sec   (6178 perm/sec)   p_kst 3.570000e-01   p_cons 2.642000e-01   p_joint 4.446000e-01

Outputting figure to mutsig2_images.part000000000178/TMIGD2.3_869_10000_0.357_0.2642_0.4446.png
                gene_name: TMIGD2
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 53 percent done.
TMPO
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.380421e-01	ci left: 2.325212e-02	ci right 2.962780e-02	k: 263	n:10000
Cons ci ratio: 3.254388e-01	ci left: 1.197339e-02	ci right 1.671572e-02	k: 142	n:10000
KS ci ratio: 4.636081e-02	ci left: 4.071122e-01	ci right 4.265363e-01	k: 4168	n:10000
TMPO   10000 perm   2 sec   (5004 perm/sec)   p_kst 4.168000e-01   p_cons 1.420000e-02   p_joint 2.630000e-02

Joint ci ratio: 1.184089e-01	ci left: 4.886604e-02	ci right 5.506504e-02	k: 1038	n:20000
Cons ci ratio: 2.326135e-01	ci left: 1.237052e-02	ci right 1.567300e-02	k: 279	n:20000
KS ci ratio: 3.208045e-02	ci left: 4.205299e-01	ci right 4.342912e-01	k: 8548	n:20000
TMPO   20000 perm   4 sec   (4582 perm/sec)   p_kst 4.274000e-01   p_cons 1.395000e-02   p_joint 5.190000e-02

Joint ci ratio: 8.468047e-02	ci left: 6.383672e-02	ci right 6.951422e-02	k: 1999	n:30000
Cons ci ratio: 1.881208e-01	ci left: 1.292349e-02	ci right 1.563844e-02	k: 427	n:30000
KS ci ratio: 2.650352e-02	ci left: 4.160697e-01	ci right 4.272788e-01	k: 12650	n:30000
TMPO   30000 perm   7 sec   (4408 perm/sec)   p_kst 4.216667e-01   p_cons 1.423333e-02   p_joint 6.663333e-02

Joint ci ratio: 9.108915e-02	ci left: 4.223086e-02	ci right 4.628564e-02	k: 1769	n:40000
Cons ci ratio: 1.761795e-01	ci left: 1.114722e-02	ci right 1.332445e-02	k: 488	n:40000
KS ci ratio: 2.287989e-02	ci left: 4.183764e-01	ci right 4.280847e-01	k: 16929	n:40000
TMPO   40000 perm   9 sec   (4294 perm/sec)   p_kst 4.232250e-01   p_cons 1.220000e-02   p_joint 4.422500e-02

Joint ci ratio: 9.074224e-02	ci left: 3.434499e-02	ci right 3.762917e-02	k: 1798	n:50000
Cons ci ratio: 1.576127e-01	ci left: 1.125617e-02	ci right 1.320107e-02	k: 610	n:50000
KS ci ratio: 2.045390e-02	ci left: 4.191436e-01	ci right 4.278253e-01	k: 21174	n:50000
TMPO   50000 perm   12 sec   (4196 perm/sec)   p_kst 4.234800e-01   p_cons 1.220000e-02   p_joint 3.596000e-02

Joint ci ratio: 1.191040e-01	ci left: 1.667615e-02	ci right 1.880420e-02	k: 1063	n:60000
Cons ci ratio: 1.436030e-01	ci left: 1.138515e-02	ci right 1.316249e-02	k: 735	n:60000
KS ci ratio: 1.869918e-02	ci left: 4.188094e-01	ci right 4.267314e-01	k: 25366	n:60000
TMPO   60000 perm   15 sec   (4105 perm/sec)   p_kst 4.227667e-01   p_cons 1.225000e-02   p_joint 1.771667e-02

Joint ci ratio: 1.037506e-01	ci left: 1.894783e-02	ci right 2.103508e-02	k: 1398	n:70000
Cons ci ratio: 1.332390e-01	ci left: 1.139990e-02	ci right 1.304091e-02	k: 854	n:70000
KS ci ratio: 1.731199e-02	ci left: 4.191080e-01	ci right 4.264412e-01	k: 29594	n:70000
TMPO   70000 perm   17 sec   (4022 perm/sec)   p_kst 4.227714e-01   p_cons 1.220000e-02   p_joint 1.997143e-02

Joint ci ratio: 1.096925e-01	ci left: 1.484992e-02	ci right 1.658546e-02	k: 1256	n:80000
Cons ci ratio: 1.249021e-01	ci left: 1.140232e-02	ci right 1.293337e-02	k: 972	n:80000
KS ci ratio: 1.620668e-02	ci left: 4.189614e-01	ci right 4.258193e-01	k: 33791	n:80000
TMPO   80000 perm   20 sec   (3945 perm/sec)   p_kst 4.223875e-01   p_cons 1.215000e-02   p_joint 1.570000e-02

Joint ci ratio: 7.589391e-02	ci left: 2.769520e-02	ci right 2.989087e-02	k: 2590	n:90000
Cons ci ratio: 1.073891e-01	ci left: 1.380486e-02	ci right 1.538221e-02	k: 1312	n:90000
KS ci ratio: 1.524332e-02	ci left: 4.203243e-01	ci right 4.267917e-01	k: 38120	n:90000
TMPO   90000 perm   23 sec   (3872 perm/sec)   p_kst 4.235556e-01   p_cons 1.457778e-02   p_joint 2.877778e-02

Joint ci ratio: 7.454245e-02	ci left: 2.590597e-02	ci right 2.792160e-02	k: 2690	n:100000
Cons ci ratio: 1.022663e-01	ci left: 1.373896e-02	ci right 1.522939e-02	k: 1447	n:100000
KS ci ratio: 1.447372e-02	ci left: 4.200651e-01	ci right 4.261993e-01	k: 42313	n:100000
TMPO   100000 perm   26 sec   (3801 perm/sec)   p_kst 4.231300e-01   p_cons 1.447000e-02   p_joint 2.690000e-02

Joint ci ratio: 6.642234e-02	ci left: 2.967054e-02	ci right 3.171794e-02	k: 3375	n:110000
Cons ci ratio: 9.713034e-02	ci left: 1.388171e-02	ci right 1.530769e-02	k: 1604	n:110000
KS ci ratio: 1.377920e-02	ci left: 4.209499e-01	ci right 4.267996e-01	k: 46626	n:110000
TMPO   110000 perm   29 sec   (3735 perm/sec)   p_kst 4.238727e-01   p_cons 1.458182e-02   p_joint 3.068182e-02

Outputting figure to mutsig2_images.part000000000178/TMPO.3_2925_110000_0.42387_0.014582_0.030682.png
                gene_name: TMPO
               theta_stop: 0.097 
                    nperm: 110000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.015 
      ci_cons_bounds_left: 0.014 
     ci_cons_bounds_right: 0.015 
                  p_joint: 0.031 
     ci_joint_bounds_left: 0.030 
    ci_joint_bounds_right: 0.032 

Current progress: 56 percent done.
TMPRSS11B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.351584e-02	ci left: 8.875964e-01	ci right 8.997732e-01	k: 8938	n:10000
KS ci ratio: 1.910962e-02	ci left: 8.001410e-01	ci right 8.156792e-01	k: 8080	n:10000
TMPRSS11B   10000 perm   2 sec   (6211 perm/sec)   p_kst 8.080000e-01   p_cons 8.938000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000178/TMPRSS11B.3_1291_10000_0.808_0.8938_1.png
                gene_name: TMPRSS11B
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 59 percent done.
TMPRSS11D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.013616e-02	ci left: 2.891445e-01	ci right 3.071732e-01	k: 2981	n:10000
Cons ci ratio: 2.721092e-02	ci left: 6.655187e-01	ci right 6.839794e-01	k: 6748	n:10000
KS ci ratio: 8.627786e-02	ci left: 1.636672e-01	ci right 1.785250e-01	k: 1710	n:10000
TMPRSS11D   10000 perm   1 sec   (6744 perm/sec)   p_kst 1.710000e-01   p_cons 6.748000e-01   p_joint 2.981000e-01

Outputting figure to mutsig2_images.part000000000178/TMPRSS11D.3_1297_10000_0.171_0.6748_0.2981.png
                gene_name: TMPRSS11D
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 62 percent done.
TMPRSS12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.470359e-02	ci left: 4.248546e-01	ci right 4.443835e-01	k: 4346	n:10000
Cons ci ratio: 1.127108e-01	ci left: 1.017865e-01	ci right 1.140430e-01	k: 1078	n:10000
KS ci ratio: 3.749121e-02	ci left: 5.123546e-01	ci right 5.320325e-01	k: 5222	n:10000
TMPRSS12   10000 perm   2 sec   (6485 perm/sec)   p_kst 5.222000e-01   p_cons 1.078000e-01   p_joint 4.346000e-01

Joint ci ratio: 2.899008e-02	ci left: 4.706062e-01	ci right 4.845004e-01	k: 9551	n:20000
Cons ci ratio: 8.131434e-02	ci left: 9.985126e-02	ci right 1.083642e-01	k: 2081	n:20000
KS ci ratio: 2.688643e-02	ci left: 5.082469e-01	ci right 5.221487e-01	k: 10304	n:20000
TMPRSS12   20000 perm   4 sec   (5607 perm/sec)   p_kst 5.152000e-01   p_cons 1.040500e-01   p_joint 4.775500e-01

Outputting figure to mutsig2_images.part000000000178/TMPRSS12.3_1067_20000_0.5152_0.10405_0.47755.png
                gene_name: TMPRSS12
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.100 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.48 

Current progress: 65 percent done.
TMEM45A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.457943e-02	ci left: 3.309118e-01	ci right 3.495813e-01	k: 3402	n:10000
Cons ci ratio: 5.509389e-02	ci left: 3.267412e-01	ci right 3.453544e-01	k: 3360	n:10000
KS ci ratio: 9.800946e-02	ci left: 1.311004e-01	ci right 1.447113e-01	k: 1378	n:10000
TMEM45A   10000 perm   1 sec   (7044 perm/sec)   p_kst 1.378000e-01   p_cons 3.360000e-01   p_joint 3.402000e-01

Outputting figure to mutsig2_images.part000000000178/TMEM45A.2_848_10000_0.1378_0.336_0.3402.png
                gene_name: TMEM45A
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 68 percent done.
TMEM49
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.107083e-01	ci left: 1.051997e-01	ci right 1.176277e-01	k: 1113	n:10000
KS ci ratio: 5.849639e-02	ci left: 3.007434e-01	ci right 3.189675e-01	k: 3098	n:10000
TMEM49   10000 perm   2 sec   (6487 perm/sec)   p_kst 3.098000e-01   p_cons 1.113000e-01   p_joint 1

Joint ci ratio: 4.154288e-02	ci left: 3.016050e-01	ci right 3.144508e-01	k: 6160	n:20000
Cons ci ratio: 7.896375e-02	ci left: 1.053517e-01	ci right 1.140622e-01	k: 2193	n:20000
KS ci ratio: 4.154288e-02	ci left: 3.016050e-01	ci right 3.144508e-01	k: 6160	n:20000
TMEM49   20000 perm   4 sec   (5591 perm/sec)   p_kst 3.080000e-01   p_cons 1.096500e-01   p_joint 3.080000e-01

Outputting figure to mutsig2_images.part000000000178/TMEM49.2_1265_20000_0.308_0.10965_0.308.png
                gene_name: TMEM49
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 71 percent done.
TMEM62
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.851468e-01	ci left: 3.891660e-02	ci right 4.695241e-02	k: 428	n:10000
Cons ci ratio: 2.375804e-01	ci left: 2.334629e-02	ci right 2.973355e-02	k: 264	n:10000
KS ci ratio: 3.981823e-02	ci left: 4.822549e-01	ci right 5.019497e-01	k: 4921	n:10000
TMEM62   10000 perm   2 sec   (6082 perm/sec)   p_kst 4.921000e-01   p_cons 2.640000e-02   p_joint 4.280000e-02

Joint ci ratio: 1.309216e-01	ci left: 4.008492e-02	ci right 4.574894e-02	k: 857	n:20000
Cons ci ratio: 1.676740e-01	ci left: 2.436600e-02	ci right 2.887305e-02	k: 531	n:20000
KS ci ratio: 2.806793e-02	ci left: 4.867474e-01	ci right 5.006545e-01	k: 9874	n:20000
TMEM62   20000 perm   4 sec   (5386 perm/sec)   p_kst 4.937000e-01   p_cons 2.655000e-02   p_joint 4.285000e-02

Joint ci ratio: 9.745865e-02	ci left: 4.866769e-02	ci right 5.368635e-02	k: 1534	n:30000
Cons ci ratio: 1.344177e-01	ci left: 2.571090e-02	ci right 2.944801e-02	k: 826	n:30000
KS ci ratio: 2.292406e-02	ci left: 4.878934e-01	ci right 4.992412e-01	k: 14807	n:30000
TMEM62   30000 perm   6 sec   (5122 perm/sec)   p_kst 4.935667e-01   p_cons 2.753333e-02   p_joint 5.113333e-02

Joint ci ratio: 8.364377e-02	ci left: 4.986876e-02	ci right 5.424656e-02	k: 2081	n:40000
Cons ci ratio: 1.145879e-01	ci left: 2.679393e-02	ci right 3.007501e-02	k: 1136	n:40000
KS ci ratio: 1.990145e-02	ci left: 4.874389e-01	ci right 4.972622e-01	k: 19694	n:40000
TMEM62   40000 perm   8 sec   (4953 perm/sec)   p_kst 4.923500e-01   p_cons 2.840000e-02   p_joint 5.202500e-02

Joint ci ratio: 7.465469e-02	ci left: 5.030568e-02	ci right 5.422650e-02	k: 2612	n:50000
Cons ci ratio: 1.024259e-01	ci left: 2.700042e-02	ci right 2.993467e-02	k: 1422	n:50000
KS ci ratio: 1.778950e-02	ci left: 4.882684e-01	ci right 4.970525e-01	k: 24633	n:50000
TMEM62   50000 perm   10 sec   (4807 perm/sec)   p_kst 4.926600e-01   p_cons 2.844000e-02   p_joint 5.224000e-02

Joint ci ratio: 6.877264e-02	ci left: 4.959738e-02	ci right 5.314617e-02	k: 3081	n:60000
Cons ci ratio: 9.343423e-02	ci left: 2.716680e-02	ci right 2.984573e-02	k: 1709	n:60000
KS ci ratio: 1.622585e-02	ci left: 4.890750e-01	ci right 4.970923e-01	k: 29585	n:60000
TMEM62   60000 perm   13 sec   (4687 perm/sec)   p_kst 4.930833e-01   p_cons 2.848333e-02   p_joint 5.135000e-02

Outputting figure to mutsig2_images.part000000000178/TMEM62.2_1988_60000_0.49308_0.028483_0.05135.png
                gene_name: TMEM62
               theta_stop: 0.093 
                    nperm: 60000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.028 
      ci_cons_bounds_left: 0.027 
     ci_cons_bounds_right: 0.030 
                  p_joint: 0.051 
     ci_joint_bounds_left: 0.050 
    ci_joint_bounds_right: 0.053 

Current progress: 74 percent done.
TMEM63A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.186327e-02	ci left: 4.572822e-01	ci right 4.769370e-01	k: 4671	n:10000
Cons ci ratio: 7.002437e-02	ci left: 2.301744e-01	ci right 2.469782e-01	k: 2385	n:10000
KS ci ratio: 4.334736e-02	ci left: 4.400155e-01	ci right 4.596137e-01	k: 4498	n:10000
TMEM63A   10000 perm   2 sec   (5470 perm/sec)   p_kst 4.498000e-01   p_cons 2.385000e-01   p_joint 4.671000e-01

Outputting figure to mutsig2_images.part000000000178/TMEM63A.2_2512_10000_0.4498_0.2385_0.4671.png
                gene_name: TMEM63A
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 76 percent done.
TMEM71
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.056065e-02	ci left: 9.273022e-01	ci right 9.372442e-01	k: 9324	n:10000
Cons ci ratio: 2.107331e-02	ci left: 7.674962e-01	ci right 7.839429e-01	k: 7758	n:10000
KS ci ratio: 2.876884e-02	ci left: 6.404584e-01	ci right 6.592543e-01	k: 6499	n:10000
TMEM71   10000 perm   2 sec   (6619 perm/sec)   p_kst 6.499000e-01   p_cons 7.758000e-01   p_joint 9.324000e-01

Outputting figure to mutsig2_images.part000000000178/TMEM71.2_924_10000_0.6499_0.7758_0.9324.png
                gene_name: TMEM71
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 79 percent done.
TMEM74
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.009630e-03	ci left: 9.655188e-01	ci right 9.724045e-01	k: 9691	n:10000
Cons ci ratio: 3.504683e-02	ci left: 5.458961e-01	ci right 5.654714e-01	k: 5557	n:10000
KS ci ratio: 3.729637e-02	ci left: 5.149562e-01	ci right 5.346293e-01	k: 5248	n:10000
TMEM74   10000 perm   1 sec   (6884 perm/sec)   p_kst 5.248000e-01   p_cons 5.557000e-01   p_joint 9.691000e-01

Outputting figure to mutsig2_images.part000000000178/TMEM74.2_922_10000_0.5248_0.5557_0.9691.png
                gene_name: TMEM74
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.97 

Current progress: 82 percent done.
TMEM87B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.787322e-02	ci left: 3.053055e-01	ci right 3.236027e-01	k: 3144	n:10000
Cons ci ratio: 4.777161e-02	ci left: 3.926687e-01	ci right 4.119882e-01	k: 4023	n:10000
KS ci ratio: 1.678782e-01	ci left: 4.734532e-02	ci right 5.611815e-02	k: 516	n:10000
TMEM87B   10000 perm   2 sec   (6061 perm/sec)   p_kst 5.160000e-02   p_cons 4.023000e-01   p_joint 3.144000e-01

Joint ci ratio: 4.071477e-02	ci left: 3.102052e-01	ci right 3.231481e-01	k: 6333	n:20000
Cons ci ratio: 3.418656e-02	ci left: 3.898107e-01	ci right 4.034194e-01	k: 7932	n:20000
KS ci ratio: 1.174580e-01	ci left: 4.964363e-02	ci right 5.588721e-02	k: 1054	n:20000
TMEM87B   20000 perm   4 sec   (5332 perm/sec)   p_kst 5.270000e-02   p_cons 3.966000e-01   p_joint 3.166500e-01

Joint ci ratio: 2.593206e-02	ci left: 4.267176e-01	ci right 4.379622e-01	k: 12970	n:30000
Cons ci ratio: 2.802914e-02	ci left: 3.890962e-01	ci right 4.001909e-01	k: 11839	n:30000
KS ci ratio: 9.712567e-02	ci left: 4.899332e-02	ci right 5.402732e-02	k: 1544	n:30000
TMEM87B   30000 perm   6 sec   (5031 perm/sec)   p_kst 5.146667e-02   p_cons 3.946333e-01   p_joint 4.323333e-01

Outputting figure to mutsig2_images.part000000000178/TMEM87B.2_1744_30000_0.051467_0.39463_0.43233.png
                gene_name: TMEM87B
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.051 
        ci_ks_bounds_left: 0.049 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.44 

Current progress: 85 percent done.
TMEM97
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.871812e-02	ci left: 3.833100e-01	ci right 4.025524e-01	k: 3929	n:10000
Cons ci ratio: 8.133230e-02	ci left: 1.807775e-01	ci right 1.962044e-01	k: 1884	n:10000
KS ci ratio: 2.018079e-02	ci left: 7.823898e-01	ci right 7.984406e-01	k: 7905	n:10000
TMEM97   10000 perm   1 sec   (6918 perm/sec)   p_kst 7.905000e-01   p_cons 1.884000e-01   p_joint 3.929000e-01

Outputting figure to mutsig2_images.part000000000178/TMEM97.2_543_10000_0.7905_0.1884_0.3929.png
                gene_name: TMEM97
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 88 percent done.
TMEM99
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.556154e-02	ci left: 8.570234e-01	ci right 8.705639e-01	k: 8639	n:10000
KS ci ratio: 3.797479e-02	ci left: 5.059517e-01	ci right 5.256391e-01	k: 5158	n:10000
TMEM99   10000 perm   1 sec   (6748 perm/sec)   p_kst 5.158000e-01   p_cons 8.639000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000178/TMEM99.2_781_10000_0.5158_0.8639_1.png
                gene_name: TMEM99
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
TMOD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.985870e-01	ci left: 3.376644e-02	ci right 4.130605e-02	k: 374	n:10000
Cons ci ratio: 1.643869e-01	ci left: 4.936226e-02	ci right 5.829990e-02	k: 537	n:10000
KS ci ratio: 1.006938e-01	ci left: 1.249344e-01	ci right 1.382810e-01	k: 1315	n:10000
TMOD2   10000 perm   1 sec   (6871 perm/sec)   p_kst 1.315000e-01   p_cons 5.370000e-02   p_joint 3.740000e-02

Joint ci ratio: 1.503973e-01	ci left: 3.037464e-02	ci right 3.536238e-02	k: 656	n:20000
Cons ci ratio: 9.533036e-02	ci left: 7.422213e-02	ci right 8.170111e-02	k: 1558	n:20000
KS ci ratio: 7.087729e-02	ci left: 1.279285e-01	ci right 1.373786e-01	k: 2652	n:20000
TMOD2   20000 perm   3 sec   (5915 perm/sec)   p_kst 1.326000e-01   p_cons 7.790000e-02   p_joint 3.280000e-02

Joint ci ratio: 1.238762e-01	ci left: 3.029580e-02	ci right 3.432877e-02	k: 968	n:30000
Cons ci ratio: 7.734530e-02	ci left: 7.580818e-02	ci right 8.194034e-02	k: 2365	n:30000
KS ci ratio: 5.791755e-02	ci left: 1.286168e-01	ci right 1.363212e-01	k: 3973	n:30000
TMOD2   30000 perm   5 sec   (5586 perm/sec)   p_kst 1.324333e-01   p_cons 7.883333e-02   p_joint 3.226667e-02

Joint ci ratio: 1.088128e-01	ci left: 2.971253e-02	ci right 3.315593e-02	k: 1256	n:40000
Cons ci ratio: 6.644358e-02	ci left: 7.738405e-02	ci right 8.272710e-02	k: 3201	n:40000
KS ci ratio: 5.012369e-02	ci left: 1.292907e-01	ci right 1.359627e-01	k: 5304	n:40000
TMOD2   40000 perm   7 sec   (5386 perm/sec)   p_kst 1.326000e-01   p_cons 8.002500e-02   p_joint 3.140000e-02

Joint ci ratio: 9.870388e-02	ci left: 2.906861e-02	ci right 3.210621e-02	k: 1528	n:50000
Cons ci ratio: 5.934450e-02	ci left: 7.787322e-02	ci right 8.265565e-02	k: 4012	n:50000
KS ci ratio: 4.493466e-02	ci left: 1.291237e-01	ci right 1.350791e-01	k: 6604	n:50000
TMOD2   50000 perm   10 sec   (5214 perm/sec)   p_kst 1.320800e-01   p_cons 8.024000e-02   p_joint 3.056000e-02

Outputting figure to mutsig2_images.part000000000178/TMOD2.2_1092_50000_0.13208_0.08024_0.03056.png
                gene_name: TMOD2
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.080 
      ci_cons_bounds_left: 0.078 
     ci_cons_bounds_right: 0.083 
                  p_joint: 0.031 
     ci_joint_bounds_left: 0.029 
    ci_joint_bounds_right: 0.032 

Current progress: 94 percent done.
TMOD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.962467e-03	ci left: 9.345442e-01	ci right 9.439979e-01	k: 9394	n:10000
Cons ci ratio: 5.892304e-02	ci left: 2.976695e-01	ci right 3.158432e-01	k: 3067	n:10000
KS ci ratio: 7.844707e-02	ci left: 1.919029e-01	ci right 2.076724e-01	k: 1997	n:10000
TMOD3   10000 perm   2 sec   (6561 perm/sec)   p_kst 1.997000e-01   p_cons 3.067000e-01   p_joint 9.394000e-01

Outputting figure to mutsig2_images.part000000000178/TMOD3.2_1095_10000_0.1997_0.3067_0.9394.png
                gene_name: TMOD3
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 97 percent done.
TMPRSS11A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.870345e-02	ci left: 4.964503e-01	ci right 5.161460e-01	k: 5063	n:10000
Cons ci ratio: 3.415440e-02	ci left: 5.586236e-01	ci right 5.781366e-01	k: 5684	n:10000
KS ci ratio: 7.639762e-02	ci left: 2.003766e-01	ci right 2.163937e-01	k: 2083	n:10000
TMPRSS11A   10000 perm   1 sec   (6692 perm/sec)   p_kst 2.083000e-01   p_cons 5.684000e-01   p_joint 5.063000e-01

Outputting figure to mutsig2_images.part000000000178/TMPRSS11A.2_1306_10000_0.2083_0.5684_0.5063.png
                gene_name: TMPRSS11A
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000178
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 178 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1702>
Subject: Job 8004642: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1702>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000179> was used as the working directory.
Started at Sun Nov 11 15:22:41 2012
Results reported at Sun Nov 11 18:36:03 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000179.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000179.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 179  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000179.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  11771.31 sec.
    Max Memory :      4786 MB
    Max Swap   :      7230 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
179
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 179
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 179: processing genes 16105 - 16194
Calculating significance of each gene.
Using projection method.
16105	TMTC1	1
16106	TMTC2	3.978686e-01
16107	TMTC3	3.670943e-01
16108	TMTC4	5.656551e-01
16109	TMUB1	1
16110	TMUB2	1
16111	TMX1	1
16112	TMX2	1
16113	TMX3	1
16114	TMX4	1
16115	TNC	2.771178e-01
16116	TNF	4.856887e-01
16117	TNFAIP1	1
16118	TNFAIP2	5.991925e-01
16119	TNFAIP3	1
16120	TNFAIP6	1
16121	TNFAIP8	5.354343e-01
16122	TNFAIP8L1	1
16123	TNFAIP8L2	5.896087e-01
16124	TNFAIP8L3	1
16125	TNFRSF10A	8.433681e-01
16126	TNFRSF10B	6.572472e-01
16127	TNFRSF10C	1
16128	TNFRSF10D	1
16129	TNFRSF11A	6.987038e-01
16130	TNFRSF11B	1
16131	TNFRSF12A	1
16132	TNFRSF13B	6.244121e-01
16133	TNFRSF13C	1
16134	TNFRSF14	1
16135	TNFRSF17	4.175415e-01
16136	TNFRSF18	3.463469e-01
16137	TNFRSF19	7.607418e-01
16138	TNFRSF1A	4.425392e-01
16139	TNFRSF1B	6.024820e-01
16140	TNFRSF21	5.318479e-01
16141	TNFRSF25	1
16142	TNFRSF4	1
16143	TNFRSF6B	5.093066e-01
16144	TNFRSF8	1
16145	TNFRSF9	6.422678e-01
16146	TNFSF10	1
16147	TNFSF11	5.292135e-01
16148	TNFSF12	1
16149	TNFSF12-TNFSF13	1
16150	TNFSF13	5.330790e-01
16151	TNFSF13B	1
16152	TNFSF14	4.864876e-01
16153	TNFSF15	6.318084e-01
16154	TNFSF18	4.921740e-01
16155	TNFSF4	1
16156	TNFSF8	1
16157	TNFSF9	1
16158	TNIK	1.086076e-01
16159	TNIP1	8.500690e-01
16160	TNIP2	1
16161	TNIP3	4.440640e-01
16162	TNK1	1
16163	TNK2	1
16164	TNKS	3.238846e-01
16165	TNKS1BP1	9.898767e-01
16166	TNKS2	8.130412e-01
16167	TNMD	1
16168	TNN	6.015135e-01
16169	TNNC1	4.858413e-01
16170	TNNC2	1
16171	TNNI1	1
16172	TNNI2	1.459701e-01
16173	TNNI3	1.419200e-01
16174	TNNI3K	6.069415e-01
16175	TNNT1	5.955372e-01
16176	TNNT2	3.506859e-01
16177	TNNT3	8.095153e-02
16178	TNP1	1
16179	TNP2	2.016102e-01
16180	TNPO1	7.795037e-01
16181	TNPO2	2.066783e-01
16182	TNPO3	9.829962e-01
16183	TNR	1
16184	TNRC18	3.620065e-01
16185	TNRC6A	9.205729e-01
16186	TNRC6B	6.774595e-01
16187	TNRC6C	9.768645e-01
16188	TNS1	7.982540e-01
16189	TNS3	4.329529e-01
16190	TNS4	9.627643e-01
16191	TNXB	9.997263e-01
16192	TOB1	1
16193	TOB2	1
16194	TOE1	7.058925e-01
Done

Running MutSig 2:
Scatter job 179: processing genes 16105 - 16194
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
TNR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.463008e-02	ci left: 5.518081e-01	ci right 5.713560e-01	k: 5616	n:10000
Cons ci ratio: 8.481661e-02	ci left: 1.684829e-01	ci right 1.835063e-01	k: 1759	n:10000
KS ci ratio: 1.677804e-02	ci left: 8.379602e-01	ci right 8.522382e-01	k: 8452	n:10000
TNR   10000 perm   3 sec   (3903 perm/sec)   p_kst 8.452000e-01   p_cons 1.759000e-01   p_joint 5.616000e-01

Outputting figure to mutsig2_images.part000000000179/TNR.26_4161_10000_0.8452_0.1759_0.5616.png
                gene_name: TNR
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 3 percent done.
TNN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.215870e-02	ci left: 4.537880e-01	ci right 4.734332e-01	k: 4636	n:10000
Cons ci ratio: 6.148482e-02	ci left: 2.800289e-01	ci right 2.978941e-01	k: 2889	n:10000
KS ci ratio: 6.183069e-02	ci left: 2.777507e-01	ci right 2.955737e-01	k: 2866	n:10000
TNN   10000 perm   2 sec   (4341 perm/sec)   p_kst 2.866000e-01   p_cons 2.889000e-01   p_joint 4.636000e-01

Outputting figure to mutsig2_images.part000000000179/TNN.20_3972_10000_0.2866_0.2889_0.4636.png
                gene_name: TNN
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 6 percent done.
TNXB
Processing conservation and coverage...
67% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.134257e-01	ci left: 1.298624e-02	ci right 1.790194e-02	k: 153	n:10000
Cons ci ratio: 2.010159e-02	ci left: 7.837077e-01	ci right 7.997220e-01	k: 7918	n:10000
KS ci ratio: 1.752551e+00	ci left: 1.089969e-04	ci right 1.023839e-03	k: 4	n:10000
TNXB   10000 perm   4 sec   (2842 perm/sec)   p_kst 4.000000e-04   p_cons 7.918000e-01   p_joint 1.530000e-02

Joint ci ratio: 3.815379e-01	ci left: 4.250695e-03	ci right 6.297200e-03	k: 104	n:20000
Cons ci ratio: 1.449136e-02	ci left: 7.795935e-01	ci right 7.910234e-01	k: 15707	n:20000
KS ci ratio: 1.481324e+00	ci left: 1.101024e-04	ci right 6.528585e-04	k: 6	n:20000
TNXB   20000 perm   8 sec   (2646 perm/sec)   p_kst 3.000000e-04   p_cons 7.853500e-01   p_joint 5.200000e-03

Joint ci ratio: 4.296732e-01	ci left: 2.174473e-03	ci right 3.391668e-03	k: 82	n:30000
Cons ci ratio: 1.182918e-02	ci left: 7.807437e-01	ci right 7.900676e-01	k: 23563	n:30000
KS ci ratio: 1.385721e+00	ci left: 9.381708e-05	ci right 4.806964e-04	k: 7	n:30000
TNXB   30000 perm   12 sec   (2580 perm/sec)   p_kst 2.333333e-04   p_cons 7.854333e-01   p_joint 2.733333e-03

Joint ci ratio: 3.820456e-01	ci left: 2.124867e-03	ci right 3.149468e-03	k: 104	n:40000
Cons ci ratio: 1.017163e-02	ci left: 7.837850e-01	ci right 7.918231e-01	k: 31513	n:40000
KS ci ratio: 1.131423e+00	ci left: 1.372867e-04	ci right 4.919976e-04	k: 11	n:40000
TNXB   40000 perm   16 sec   (2542 perm/sec)   p_kst 2.750000e-04   p_cons 7.878250e-01   p_joint 2.600000e-03

Joint ci ratio: 3.574122e-01	ci left: 1.972016e-03	ci right 2.847358e-03	k: 119	n:50000
Cons ci ratio: 9.104986e-03	ci left: 7.839481e-01	ci right 7.911385e-01	k: 39378	n:50000
KS ci ratio: 1.011978e+00	ci left: 1.530868e-04	ci right 4.697478e-04	k: 14	n:50000
TNXB   50000 perm   20 sec   (2511 perm/sec)   p_kst 2.800000e-04   p_cons 7.875600e-01   p_joint 2.380000e-03

Joint ci ratio: 3.651884e-01	ci left: 1.567514e-03	ci right 2.282044e-03	k: 114	n:60000
Cons ci ratio: 8.316059e-03	ci left: 7.840872e-01	ci right 7.906516e-01	k: 47243	n:60000
KS ci ratio: 9.798612e-01	ci left: 1.399296e-04	ci right 4.123035e-04	k: 15	n:60000
TNXB   60000 perm   24 sec   (2484 perm/sec)   p_kst 2.500000e-04   p_cons 7.873833e-01   p_joint 1.900000e-03

Joint ci ratio: 3.636586e-01	ci left: 1.356532e-03	ci right 1.971677e-03	k: 115	n:70000
Cons ci ratio: 7.700430e-03	ci left: 7.842782e-01	ci right 7.903551e-01	k: 55113	n:70000
KS ci ratio: 9.798810e-01	ci left: 1.199389e-04	ci right 3.534071e-04	k: 15	n:70000
TNXB   70000 perm   28 sec   (2459 perm/sec)   p_kst 2.142857e-04   p_cons 7.873286e-01   p_joint 1.642857e-03

Joint ci ratio: 3.448562e-01	ci left: 1.335010e-03	ci right 1.902117e-03	k: 128	n:80000
Cons ci ratio: 7.202898e-03	ci left: 7.844854e-01	ci right 7.901688e-01	k: 62987	n:80000
KS ci ratio: 9.506327e-01	ci left: 1.143215e-04	ci right 3.247672e-04	k: 16	n:80000
TNXB   80000 perm   33 sec   (2432 perm/sec)   p_kst 2.000000e-04   p_cons 7.873375e-01   p_joint 1.600000e-03

Joint ci ratio: 3.546575e-01	ci left: 1.115706e-03	ci right 1.606229e-03	k: 121	n:90000
Cons ci ratio: 6.790138e-03	ci left: 7.846898e-01	ci right 7.900472e-01	k: 70864	n:90000
KS ci ratio: 8.553096e-01	ci left: 1.357442e-04	ci right 3.431834e-04	k: 20	n:90000
TNXB   90000 perm   37 sec   (2410 perm/sec)   p_kst 2.222222e-04   p_cons 7.873778e-01   p_joint 1.344444e-03

Joint ci ratio: 3.462588e-01	ci left: 1.058848e-03	ci right 1.510877e-03	k: 127	n:100000
Cons ci ratio: 6.551172e-03	ci left: 7.791064e-01	ci right 7.842372e-01	k: 78168	n:100000
KS ci ratio: 8.356507e-01	ci left: 1.299979e-04	ci right 3.209895e-04	k: 21	n:100000
TNXB   100000 perm   42 sec   (2388 perm/sec)   p_kst 2.100000e-04   p_cons 7.816800e-01   p_joint 1.270000e-03

Joint ci ratio: 3.547017e-01	ci left: 9.128322e-04	ci right 1.314219e-03	k: 121	n:110000
Cons ci ratio: 5.863270e-03	ci left: 8.001440e-01	ci right 8.048583e-01	k: 88276	n:110000
KS ci ratio: 8.000757e-01	ci left: 1.325502e-04	ci right 3.137226e-04	k: 23	n:110000
TNXB   110000 perm   46 sec   (2368 perm/sec)   p_kst 2.090909e-04   p_cons 8.025091e-01   p_joint 1.100000e-03

Joint ci ratio: 3.384459e-01	ci left: 9.280642e-04	ci right 1.313366e-03	k: 133	n:120000
Cons ci ratio: 5.614846e-03	ci left: 8.001775e-01	ci right 8.046912e-01	k: 96293	n:120000
KS ci ratio: 7.839151e-01	ci left: 1.281478e-04	ci right 2.975696e-04	k: 24	n:120000
TNXB   120000 perm   51 sec   (2347 perm/sec)   p_kst 2.000000e-04   p_cons 8.024417e-01   p_joint 1.108333e-03

Joint ci ratio: 3.423181e-01	ci left: 8.355629e-04	ci right 1.187308e-03	k: 130	n:130000
Cons ci ratio: 5.384936e-03	ci left: 8.008351e-01	ci right 8.051668e-01	k: 104391	n:130000
KS ci ratio: 7.543231e-01	ci left: 1.306507e-04	ci right 2.930327e-04	k: 26	n:130000
TNXB   130000 perm   56 sec   (2327 perm/sec)   p_kst 2.000000e-04   p_cons 8.030077e-01   p_joint 1.000000e-03

Joint ci ratio: 3.384731e-01	ci left: 7.954738e-04	ci right 1.125758e-03	k: 133	n:140000
Cons ci ratio: 5.184493e-03	ci left: 8.011936e-01	ci right 8.053653e-01	k: 112460	n:140000
KS ci ratio: 7.278477e-01	ci left: 1.329025e-04	ci right 2.890428e-04	k: 28	n:140000
TNXB   140000 perm   61 sec   (2307 perm/sec)   p_kst 2.000000e-04   p_cons 8.032857e-01   p_joint 9.500000e-04

Joint ci ratio: 3.359837e-01	ci left: 7.546437e-04	ci right 1.065171e-03	k: 135	n:150000
Cons ci ratio: 5.016919e-03	ci left: 8.007438e-01	ci right 8.047778e-01	k: 120415	n:150000
KS ci ratio: 7.156169e-01	ci left: 1.294821e-04	ci right 2.776472e-04	k: 29	n:150000
TNXB   150000 perm   66 sec   (2288 perm/sec)   p_kst 1.933333e-04   p_cons 8.027667e-01   p_joint 9.000000e-04

Joint ci ratio: 3.265186e-01	ci left: 7.533210e-04	ci right 1.052741e-03	k: 143	n:160000
Cons ci ratio: 4.851538e-03	ci left: 8.012056e-01	ci right 8.051084e-01	k: 128506	n:160000
KS ci ratio: 6.928932e-01	ci left: 1.316474e-04	ci right 2.750015e-04	k: 31	n:160000
TNXB   160000 perm   71 sec   (2269 perm/sec)   p_kst 1.937500e-04   p_cons 8.031625e-01   p_joint 8.937500e-04

Joint ci ratio: 3.463508e-01	ci left: 6.228262e-04	ci right 8.887952e-04	k: 127	n:170000
Cons ci ratio: 4.709451e-03	ci left: 8.010776e-01	ci right 8.048650e-01	k: 136506	n:170000
KS ci ratio: 6.823162e-01	ci left: 1.287563e-04	ci right 2.657218e-04	k: 32	n:170000
TNXB   170000 perm   76 sec   (2250 perm/sec)   p_kst 1.882353e-04   p_cons 8.029765e-01   p_joint 7.470588e-04

Joint ci ratio: 3.423664e-01	ci left: 6.034489e-04	ci right 8.575222e-04	k: 130	n:180000
Cons ci ratio: 4.575137e-03	ci left: 8.012442e-01	ci right 8.049239e-01	k: 144556	n:180000
KS ci ratio: 6.722091e-01	ci left: 1.262015e-04	ci right 2.574586e-04	k: 33	n:180000
TNXB   180000 perm   81 sec   (2225 perm/sec)   p_kst 1.833333e-04   p_cons 8.030889e-01   p_joint 7.222222e-04

Joint ci ratio: 3.323675e-01	ci left: 6.102281e-04	ci right 8.580473e-04	k: 138	n:190000
Cons ci ratio: 4.455326e-03	ci left: 8.011357e-01	ci right 8.047182e-01	k: 152557	n:190000
KS ci ratio: 6.532697e-01	ci left: 1.283126e-04	ci right 2.561830e-04	k: 35	n:190000
TNXB   190000 perm   86 sec   (2206 perm/sec)   p_kst 1.842105e-04   p_cons 8.029316e-01   p_joint 7.263158e-04

Joint ci ratio: 3.323737e-01	ci left: 5.797151e-04	ci right 8.151476e-04	k: 138	n:200000
Cons ci ratio: 4.346926e-03	ci left: 8.008587e-01	ci right 8.043525e-01	k: 160522	n:200000
KS ci ratio: 6.358460e-01	ci left: 1.302603e-04	ci right 2.549892e-04	k: 37	n:200000
TNXB   200000 perm   91 sec   (2188 perm/sec)   p_kst 1.850000e-04   p_cons 8.026100e-01   p_joint 6.900000e-04

Joint ci ratio: 3.276945e-01	ci left: 5.695786e-04	ci right 7.969522e-04	k: 142	n:210000
Cons ci ratio: 4.242745e-03	ci left: 8.008576e-01	ci right 8.042674e-01	k: 168539	n:210000
KS ci ratio: 6.358489e-01	ci left: 1.240573e-04	ci right 2.428473e-04	k: 37	n:210000
TNXB   210000 perm   97 sec   (2170 perm/sec)   p_kst 1.761905e-04   p_cons 8.025667e-01   p_joint 6.761905e-04

Joint ci ratio: 2.033441e-01	ci left: 1.514920e-03	ci right 1.862058e-03	k: 370	n:220000
Cons ci ratio: 4.148031e-03	ci left: 8.006797e-01	ci right 8.040123e-01	k: 176517	n:220000
KS ci ratio: 6.048100e-01	ci left: 1.337410e-04	ci right 2.528149e-04	k: 41	n:220000
TNXB   220000 perm   102 sec   (2148 perm/sec)   p_kst 1.863636e-04   p_cons 8.023500e-01   p_joint 1.681818e-03

Joint ci ratio: 1.908738e-01	ci left: 1.655738e-03	ci right 2.009180e-03	k: 420	n:230000
Cons ci ratio: 4.060330e-03	ci left: 8.004440e-01	ci right 8.037049e-01	k: 184478	n:230000
KS ci ratio: 5.717311e-01	ci left: 1.464287e-04	ci right 2.667631e-04	k: 46	n:230000
TNXB   230000 perm   108 sec   (2129 perm/sec)   p_kst 2.000000e-04   p_cons 8.020783e-01   p_joint 1.826087e-03

Joint ci ratio: 1.875630e-01	ci left: 1.646288e-03	ci right 1.990922e-03	k: 435	n:240000
Cons ci ratio: 3.975297e-03	ci left: 8.004418e-01	ci right 8.036342e-01	k: 192490	n:240000
KS ci ratio: 5.599417e-01	ci left: 1.474678e-04	ci right 2.651623e-04	k: 48	n:240000
TNXB   240000 perm   114 sec   (2114 perm/sec)   p_kst 2.000000e-04   p_cons 8.020417e-01   p_joint 1.812500e-03

Joint ci ratio: 1.865016e-01	ci left: 1.599496e-03	ci right 1.932226e-03	k: 440	n:250000
Cons ci ratio: 3.897502e-03	ci left: 8.002680e-01	ci right 8.033970e-01	k: 200459	n:250000
KS ci ratio: 5.543152e-01	ci left: 1.450053e-04	ci right 2.591142e-04	k: 49	n:250000
TNXB   250000 perm   119 sec   (2094 perm/sec)   p_kst 1.960000e-04   p_cons 8.018360e-01   p_joint 1.760000e-03

Joint ci ratio: 1.850426e-01	ci left: 1.563645e-03	ci right 1.886087e-03	k: 447	n:260000
Cons ci ratio: 3.820213e-03	ci left: 8.004321e-01	ci right 8.034996e-01	k: 208512	n:260000
KS ci ratio: 5.435508e-01	ci left: 1.460528e-04	ci right 2.578981e-04	k: 51	n:260000
TNXB   260000 perm   125 sec   (2074 perm/sec)   p_kst 1.961538e-04   p_cons 8.019692e-01   p_joint 1.719231e-03

Joint ci ratio: 1.826148e-01	ci left: 1.548130e-03	ci right 1.862721e-03	k: 459	n:270000
Cons ci ratio: 3.748656e-03	ci left: 8.004732e-01	ci right 8.034832e-01	k: 216535	n:270000
KS ci ratio: 5.435528e-01	ci left: 1.406433e-04	ci right 2.483466e-04	k: 51	n:270000
TNXB   270000 perm   131 sec   (2056 perm/sec)   p_kst 1.888889e-04   p_cons 8.019815e-01   p_joint 1.700000e-03

Joint ci ratio: 1.850540e-01	ci left: 1.451948e-03	ci right 1.751377e-03	k: 447	n:280000
Cons ci ratio: 3.683996e-03	ci left: 8.002505e-01	ci right 8.032076e-01	k: 224485	n:280000
KS ci ratio: 5.384015e-01	ci left: 1.387033e-04	ci right 2.435325e-04	k: 52	n:280000
TNXB   280000 perm   137 sec   (2039 perm/sec)   p_kst 1.857143e-04   p_cons 8.017321e-01   p_joint 1.596429e-03

Joint ci ratio: 1.869494e-01	ci left: 1.372286e-03	ci right 1.658514e-03	k: 438	n:290000
Cons ci ratio: 3.619581e-03	ci left: 8.003063e-01	ci right 8.032118e-01	k: 232511	n:290000
KS ci ratio: 5.384033e-01	ci left: 1.339204e-04	ci right 2.351351e-04	k: 52	n:290000
TNXB   290000 perm   143 sec   (2022 perm/sec)   p_kst 1.793103e-04   p_cons 8.017621e-01   p_joint 1.510345e-03

Joint ci ratio: 1.856876e-01	ci left: 1.345609e-03	ci right 1.624164e-03	k: 444	n:300000
Cons ci ratio: 3.557609e-03	ci left: 8.004324e-01	ci right 8.032884e-01	k: 240559	n:300000
KS ci ratio: 5.333955e-01	ci left: 1.323382e-04	ci right 2.310781e-04	k: 53	n:300000
TNXB   300000 perm   150 sec   (2005 perm/sec)   p_kst 1.766667e-04   p_cons 8.018633e-01   p_joint 1.480000e-03

Joint ci ratio: 1.826350e-01	ci left: 1.348359e-03	ci right 1.622387e-03	k: 459	n:310000
Cons ci ratio: 3.500207e-03	ci left: 8.004149e-01	ci right 8.032246e-01	k: 248565	n:310000
KS ci ratio: 5.285249e-01	ci left: 1.308622e-04	ci right 2.272788e-04	k: 54	n:310000
TNXB   310000 perm   156 sec   (1989 perm/sec)   p_kst 1.741935e-04   p_cons 8.018226e-01   p_joint 1.480645e-03

Joint ci ratio: 1.786020e-01	ci left: 1.368882e-03	ci right 1.640274e-03	k: 480	n:320000
Cons ci ratio: 3.443159e-03	ci left: 8.006150e-01	ci right 8.033795e-01	k: 256640	n:320000
KS ci ratio: 4.977915e-01	ci left: 1.458161e-04	ci right 2.448591e-04	k: 61	n:320000
TNXB   320000 perm   162 sec   (1971 perm/sec)   p_kst 1.906250e-04   p_cons 8.020000e-01   p_joint 1.500000e-03

Joint ci ratio: 1.886961e-01	ci left: 1.182835e-03	ci right 1.432115e-03	k: 430	n:330000
Cons ci ratio: 3.390815e-03	ci left: 8.006150e-01	ci right 8.033373e-01	k: 264653	n:330000
KS ci ratio: 4.977930e-01	ci left: 1.413973e-04	ci right 2.374394e-04	k: 61	n:330000
TNXB   330000 perm   169 sec   (1956 perm/sec)   p_kst 1.848485e-04   p_cons 8.019788e-01   p_joint 1.303030e-03

Joint ci ratio: 1.869703e-01	ci left: 1.170468e-03	ci right 1.414630e-03	k: 438	n:340000
Cons ci ratio: 3.340385e-03	ci left: 8.006536e-01	ci right 8.033354e-01	k: 272679	n:340000
KS ci ratio: 4.899532e-01	ci left: 1.423879e-04	ci right 2.370655e-04	k: 63	n:340000
TNXB   340000 perm   175 sec   (1943 perm/sec)   p_kst 1.852941e-04   p_cons 8.019971e-01   p_joint 1.288235e-03

Joint ci ratio: 1.953992e-01	ci left: 1.036362e-03	ci right 1.263456e-03	k: 401	n:350000
Cons ci ratio: 3.516485e-03	ci left: 7.788673e-01	ci right 7.816138e-01	k: 273085	n:350000
KS ci ratio: 4.788577e-01	ci left: 1.458440e-04	ci right 2.399029e-04	k: 66	n:350000
TNXB   350000 perm   181 sec   (1929 perm/sec)   p_kst 1.885714e-04   p_cons 7.802429e-01   p_joint 1.145714e-03

Joint ci ratio: 1.937211e-01	ci left: 1.026071e-03	ci right 1.248751e-03	k: 408	n:360000
Cons ci ratio: 3.466302e-03	ci left: 7.789856e-01	ci right 7.816932e-01	k: 280923	n:360000
KS ci ratio: 4.753243e-01	ci left: 1.442364e-04	ci right 2.363486e-04	k: 67	n:360000
TNXB   360000 perm   188 sec   (1914 perm/sec)   p_kst 1.861111e-04   p_cons 7.803417e-01   p_joint 1.133333e-03

Joint ci ratio: 1.918548e-01	ci left: 1.018917e-03	ci right 1.237665e-03	k: 416	n:370000
Cons ci ratio: 3.419474e-03	ci left: 7.789705e-01	ci right 7.816414e-01	k: 288714	n:370000
KS ci ratio: 4.718679e-01	ci left: 1.427180e-04	ci right 2.329840e-04	k: 68	n:370000
TNXB   370000 perm   195 sec   (1899 perm/sec)   p_kst 1.837838e-04   p_cons 7.803081e-01   p_joint 1.124324e-03

Joint ci ratio: 1.902655e-01	ci left: 1.009643e-03	ci right 1.224397e-03	k: 423	n:380000
Cons ci ratio: 3.373769e-03	ci left: 7.790302e-01	ci right 7.816655e-01	k: 296533	n:380000
KS ci ratio: 4.587566e-01	ci left: 1.482543e-04	ci right 2.386049e-04	k: 72	n:380000
TNXB   380000 perm   202 sec   (1886 perm/sec)   p_kst 1.894737e-04   p_cons 7.803500e-01   p_joint 1.113158e-03

Joint ci ratio: 1.891550e-01	ci left: 9.959653e-04	ci right 1.206432e-03	k: 428	n:390000
Cons ci ratio: 3.329973e-03	ci left: 7.790743e-01	ci right 7.816754e-01	k: 304347	n:390000
KS ci ratio: 4.556469e-01	ci left: 1.467216e-04	ci right 2.353444e-04	k: 73	n:390000
TNXB   390000 perm   208 sec   (1871 perm/sec)   p_kst 1.871795e-04   p_cons 7.803769e-01   p_joint 1.097436e-03

Joint ci ratio: 1.872020e-01	ci left: 9.925061e-04	ci right 1.199830e-03	k: 437	n:400000
Cons ci ratio: 3.288823e-03	ci left: 7.790136e-01	ci right 7.815823e-01	k: 312120	n:400000
KS ci ratio: 4.496116e-01	ci left: 1.474834e-04	ci right 2.350273e-04	k: 75	n:400000
TNXB   400000 perm   215 sec   (1857 perm/sec)   p_kst 1.875000e-04   p_cons 7.803000e-01   p_joint 1.092500e-03

Joint ci ratio: 1.838726e-01	ci left: 1.005511e-03	ci right 1.211400e-03	k: 453	n:410000
Cons ci ratio: 3.248860e-03	ci left: 7.789879e-01	ci right 7.815252e-01	k: 319906	n:410000
KS ci ratio: 4.409914e-01	ci left: 1.503827e-04	ci right 2.374274e-04	k: 78	n:410000
TNXB   410000 perm   222 sec   (1844 perm/sec)   p_kst 1.902439e-04   p_cons 7.802585e-01   p_joint 1.104878e-03

Joint ci ratio: 1.834709e-01	ci left: 9.861125e-04	ci right 1.187539e-03	k: 455	n:420000
Cons ci ratio: 3.208849e-03	ci left: 7.791210e-01	ci right 7.816275e-01	k: 327758	n:420000
KS ci ratio: 4.382271e-01	ci left: 1.489195e-04	ci right 2.344174e-04	k: 79	n:420000
TNXB   420000 perm   229 sec   (1830 perm/sec)   p_kst 1.880952e-04   p_cons 7.803762e-01   p_joint 1.083333e-03

Joint ci ratio: 1.812972e-01	ci left: 9.875932e-04	ci right 1.186670e-03	k: 466	n:430000
Cons ci ratio: 3.172001e-03	ci left: 7.790617e-01	ci right 7.815391e-01	k: 335530	n:430000
KS ci ratio: 4.355140e-01	ci left: 1.475260e-04	ci right 2.315457e-04	k: 80	n:430000
TNXB   430000 perm   237 sec   (1817 perm/sec)   p_kst 1.860465e-04   p_cons 7.803023e-01   p_joint 1.083721e-03

Joint ci ratio: 2.015362e-01	ci left: 7.725322e-04	ci right 9.477846e-04	k: 377	n:440000
Cons ci ratio: 3.135083e-03	ci left: 7.791488e-01	ci right 7.815975e-01	k: 343365	n:440000
KS ci ratio: 4.328508e-01	ci left: 1.461974e-04	ci right 2.288031e-04	k: 81	n:440000
TNXB   440000 perm   244 sec   (1804 perm/sec)   p_kst 1.840909e-04   p_cons 7.803750e-01   p_joint 8.568182e-04

Joint ci ratio: 1.976513e-01	ci left: 7.870330e-04	ci right 9.617188e-04	k: 392	n:450000
Cons ci ratio: 3.100510e-03	ci left: 7.791119e-01	ci right 7.815334e-01	k: 351146	n:450000
KS ci ratio: 4.178321e-01	ci left: 1.548549e-04	ci right 2.384706e-04	k: 87	n:450000
TNXB   450000 perm   251 sec   (1791 perm/sec)   p_kst 1.933333e-04   p_cons 7.803244e-01   p_joint 8.711111e-04

Joint ci ratio: 1.954262e-01	ci left: 7.885261e-04	ci right 9.613386e-04	k: 401	n:460000
Cons ci ratio: 3.066493e-03	ci left: 7.791399e-01	ci right 7.815349e-01	k: 358956	n:460000
KS ci ratio: 4.178330e-01	ci left: 1.514884e-04	ci right 2.332865e-04	k: 87	n:460000
TNXB   460000 perm   259 sec   (1779 perm/sec)   p_kst 1.891304e-04   p_cons 7.803391e-01   p_joint 8.717391e-04

Joint ci ratio: 2.026175e-01	ci left: 7.151394e-04	ci right 8.783500e-04	k: 373	n:470000
Cons ci ratio: 3.033514e-03	ci left: 7.791732e-01	ci right 7.815425e-01	k: 366769	n:470000
KS ci ratio: 4.178338e-01	ci left: 1.482652e-04	ci right 2.283231e-04	k: 87	n:470000
TNXB   470000 perm   266 sec   (1767 perm/sec)   p_kst 1.851064e-04   p_cons 7.803596e-01   p_joint 7.936170e-04

Joint ci ratio: 2.002225e-01	ci left: 7.180452e-04	ci right 8.797452e-04	k: 382	n:480000
Cons ci ratio: 3.001413e-03	ci left: 7.792241e-01	ci right 7.815684e-01	k: 374591	n:480000
KS ci ratio: 4.131651e-01	ci left: 1.489074e-04	ci right 2.281663e-04	k: 89	n:480000
TNXB   480000 perm   274 sec   (1755 perm/sec)   p_kst 1.854167e-04   p_cons 7.803979e-01   p_joint 7.958333e-04

Joint ci ratio: 2.034390e-01	ci left: 6.801376e-04	ci right 8.360674e-04	k: 370	n:490000
Cons ci ratio: 2.970752e-03	ci left: 7.792219e-01	ci right 7.815422e-01	k: 382388	n:490000
KS ci ratio: 4.086495e-01	ci left: 1.495281e-04	ci right 2.280112e-04	k: 91	n:490000
TNXB   490000 perm   281 sec   (1743 perm/sec)   p_kst 1.857143e-04   p_cons 7.803837e-01   p_joint 7.551020e-04

Joint ci ratio: 2.020823e-01	ci left: 6.760270e-04	ci right 8.298533e-04	k: 375	n:500000
Cons ci ratio: 2.940154e-03	ci left: 7.793200e-01	ci right 7.816167e-01	k: 390235	n:500000
KS ci ratio: 4.086502e-01	ci left: 1.465375e-04	ci right 2.234510e-04	k: 91	n:500000
TNXB   500000 perm   289 sec   (1731 perm/sec)   p_kst 1.820000e-04   p_cons 7.804700e-01   p_joint 7.500000e-04

Joint ci ratio: 2.007525e-01	ci left: 6.720809e-04	ci right 8.238796e-04	k: 380	n:510000
Cons ci ratio: 2.912247e-03	ci left: 7.792063e-01	ci right 7.814807e-01	k: 397976	n:510000
KS ci ratio: 4.064476e-01	ci left: 1.454239e-04	ci right 2.212304e-04	k: 92	n:510000
TNXB   510000 perm   296 sec   (1720 perm/sec)   p_kst 1.803922e-04   p_cons 7.803451e-01   p_joint 7.450980e-04

Joint ci ratio: 1.444890e-01	ci left: 1.311321e-03	ci right 1.517376e-03	k: 734	n:520000
Cons ci ratio: 2.884261e-03	ci left: 7.791991e-01	ci right 7.814516e-01	k: 405770	n:520000
KS ci ratio: 3.939369e-01	ci left: 1.530048e-04	ci right 2.296695e-04	k: 98	n:520000
TNXB   520000 perm   304 sec   (1711 perm/sec)   p_kst 1.884615e-04   p_cons 7.803269e-01   p_joint 1.411538e-03

Joint ci ratio: 1.438068e-01	ci left: 1.299309e-03	ci right 1.502430e-03	k: 741	n:530000
Cons ci ratio: 2.858027e-03	ci left: 7.790770e-01	ci right 7.813086e-01	k: 413503	n:530000
KS ci ratio: 3.900170e-01	ci left: 1.535195e-04	ci right 2.294798e-04	k: 100	n:530000
TNXB   530000 perm   312 sec   (1701 perm/sec)   p_kst 1.886792e-04   p_cons 7.801943e-01   p_joint 1.398113e-03

Joint ci ratio: 1.430386e-01	ci left: 1.289531e-03	ci right 1.489954e-03	k: 749	n:540000
Cons ci ratio: 2.831103e-03	ci left: 7.791283e-01	ci right 7.813390e-01	k: 421327	n:540000
KS ci ratio: 3.900177e-01	ci left: 1.506765e-04	ci right 2.252303e-04	k: 100	n:540000
TNXB   540000 perm   319 sec   (1690 perm/sec)   p_kst 1.851852e-04   p_cons 7.802352e-01   p_joint 1.387037e-03

Joint ci ratio: 1.421886e-01	ci left: 1.281864e-03	ci right 1.479812e-03	k: 758	n:550000
Cons ci ratio: 2.805386e-03	ci left: 7.791214e-01	ci right 7.813120e-01	k: 429120	n:550000
KS ci ratio: 3.881015e-01	ci left: 1.495772e-04	ci right 2.231304e-04	k: 101	n:550000
TNXB   550000 perm   327 sec   (1680 perm/sec)   p_kst 1.836364e-04   p_cons 7.802182e-01   p_joint 1.378182e-03

Joint ci ratio: 1.409865e-01	ci left: 1.281366e-03	ci right 1.477422e-03	k: 771	n:560000
Cons ci ratio: 2.781241e-03	ci left: 7.790057e-01	ci right 7.811771e-01	k: 436852	n:560000
KS ci ratio: 3.843516e-01	ci left: 1.501309e-04	ci right 2.230625e-04	k: 103	n:560000
TNXB   560000 perm   335 sec   (1670 perm/sec)   p_kst 1.839286e-04   p_cons 7.800929e-01   p_joint 1.376786e-03

Joint ci ratio: 1.397252e-01	ci left: 1.282585e-03	ci right 1.476926e-03	k: 785	n:570000
Cons ci ratio: 2.756256e-03	ci left: 7.790752e-01	ci right 7.812272e-01	k: 444687	n:570000
KS ci ratio: 3.807083e-01	ci left: 1.506684e-04	ci right 2.229937e-04	k: 105	n:570000
TNXB   570000 perm   343 sec   (1660 perm/sec)   p_kst 1.842105e-04   p_cons 7.801526e-01   p_joint 1.377193e-03

Joint ci ratio: 1.429501e-01	ci left: 1.202256e-03	ci right 1.388989e-03	k: 750	n:580000
Cons ci ratio: 2.733059e-03	ci left: 7.790007e-01	ci right 7.811344e-01	k: 452440	n:580000
KS ci ratio: 3.771667e-01	ci left: 1.511905e-04	ci right 2.229242e-04	k: 107	n:580000
TNXB   580000 perm   351 sec   (1651 perm/sec)   p_kst 1.844828e-04   p_cons 7.800690e-01   p_joint 1.293103e-03

Joint ci ratio: 1.418216e-01	ci left: 1.201493e-03	ci right 1.386510e-03	k: 762	n:590000
Cons ci ratio: 2.709017e-03	ci left: 7.791089e-01	ci right 7.812240e-01	k: 460299	n:590000
KS ci ratio: 3.671059e-01	ci left: 1.578466e-04	ci right 2.302619e-04	k: 113	n:590000
TNXB   590000 perm   359 sec   (1642 perm/sec)   p_kst 1.915254e-04   p_cons 7.801678e-01   p_joint 1.291525e-03

Joint ci ratio: 1.421031e-01	ci left: 1.176645e-03	ci right 1.358225e-03	k: 759	n:600000
Cons ci ratio: 2.686500e-03	ci left: 7.790982e-01	ci right 7.811957e-01	k: 468089	n:600000
KS ci ratio: 3.608295e-01	ci left: 1.612729e-04	ci right 2.336979e-04	k: 117	n:600000
TNXB   600000 perm   368 sec   (1632 perm/sec)   p_kst 1.950000e-04   p_cons 7.801483e-01   p_joint 1.265000e-03

Joint ci ratio: 1.419178e-01	ci left: 1.160517e-03	ci right 1.339355e-03	k: 761	n:610000
Cons ci ratio: 2.664636e-03	ci left: 7.790749e-01	ci right 7.811552e-01	k: 475871	n:610000
KS ci ratio: 3.578099e-01	ci left: 1.616118e-04	ci right 2.334402e-04	k: 119	n:610000
TNXB   610000 perm   376 sec   (1622 perm/sec)   p_kst 1.950820e-04   p_cons 7.801164e-01   p_joint 1.247541e-03

Joint ci ratio: 1.420125e-01	ci left: 1.140243e-03	ci right 1.316084e-03	k: 760	n:620000
Cons ci ratio: 2.642130e-03	ci left: 7.792043e-01	ci right 7.812673e-01	k: 483747	n:620000
KS ci ratio: 3.534191e-01	ci left: 1.634117e-04	ci right 2.349442e-04	k: 122	n:620000
TNXB   620000 perm   384 sec   (1613 perm/sec)   p_kst 1.967742e-04   p_cons 7.802371e-01   p_joint 1.225806e-03

Joint ci ratio: 1.411805e-01	ci left: 1.135923e-03	ci right 1.309985e-03	k: 769	n:630000
Cons ci ratio: 2.621227e-03	ci left: 7.791928e-01	ci right 7.812395e-01	k: 491537	n:630000
KS ci ratio: 3.534197e-01	ci left: 1.608178e-04	ci right 2.312150e-04	k: 122	n:630000
TNXB   630000 perm   393 sec   (1604 perm/sec)   p_kst 1.936508e-04   p_cons 7.802175e-01   p_joint 1.220635e-03

Joint ci ratio: 1.492596e-01	ci left: 9.962014e-04	ci right 1.158369e-03	k: 688	n:640000
Cons ci ratio: 2.601428e-03	ci left: 7.791004e-01	ci right 7.811314e-01	k: 499275	n:640000
KS ci ratio: 3.505809e-01	ci left: 1.611537e-04	ci right 2.310024e-04	k: 124	n:640000
TNXB   640000 perm   401 sec   (1595 perm/sec)   p_kst 1.937500e-04   p_cons 7.801172e-01   p_joint 1.075000e-03

Joint ci ratio: 1.496964e-01	ci left: 9.749507e-04	ci right 1.134165e-03	k: 684	n:650000
Cons ci ratio: 2.581816e-03	ci left: 7.790449e-01	ci right 7.810603e-01	k: 507035	n:650000
KS ci ratio: 3.464479e-01	ci left: 1.628859e-04	ci right 2.324663e-04	k: 127	n:650000
TNXB   650000 perm   410 sec   (1587 perm/sec)   p_kst 1.953846e-04   p_cons 7.800538e-01   p_joint 1.052308e-03

Joint ci ratio: 1.488302e-01	ci left: 9.718471e-04	ci right 1.129555e-03	k: 692	n:660000
Cons ci ratio: 2.562505e-03	ci left: 7.790092e-01	ci right 7.810095e-01	k: 514807	n:660000
KS ci ratio: 3.437726e-01	ci left: 1.631856e-04	ci right 2.322360e-04	k: 129	n:660000
TNXB   660000 perm   418 sec   (1578 perm/sec)   p_kst 1.954545e-04   p_cons 7.800106e-01   p_joint 1.048485e-03

Joint ci ratio: 1.479788e-01	ci left: 9.688387e-04	ci right 1.125079e-03	k: 700	n:670000
Cons ci ratio: 2.542382e-03	ci left: 7.791422e-01	ci right 7.811270e-01	k: 522691	n:670000
KS ci ratio: 3.424583e-01	ci left: 1.621139e-04	ci right 2.303905e-04	k: 130	n:670000
TNXB   670000 perm   427 sec   (1569 perm/sec)   p_kst 1.940299e-04   p_cons 7.801358e-01   p_joint 1.044776e-03

Joint ci ratio: 1.510300e-01	ci left: 9.149529e-04	ci right 1.065821e-03	k: 672	n:680000
Cons ci ratio: 2.523839e-03	ci left: 7.791195e-01	ci right 7.810898e-01	k: 530472	n:680000
KS ci ratio: 3.411588e-01	ci left: 1.610742e-04	ci right 2.285988e-04	k: 131	n:680000
TNXB   680000 perm   436 sec   (1560 perm/sec)   p_kst 1.926471e-04   p_cons 7.801059e-01   p_joint 9.882353e-04

Joint ci ratio: 1.511435e-01	ci left: 9.002977e-04	ci right 1.048871e-03	k: 671	n:690000
Cons ci ratio: 2.505305e-03	ci left: 7.791513e-01	ci right 7.811072e-01	k: 538290	n:690000
KS ci ratio: 3.411593e-01	ci left: 1.587398e-04	ci right 2.252858e-04	k: 131	n:690000
TNXB   690000 perm   445 sec   (1550 perm/sec)   p_kst 1.898551e-04   p_cons 7.801304e-01   p_joint 9.724638e-04

Joint ci ratio: 1.500313e-01	ci left: 9.011838e-04	ci right 1.048710e-03	k: 681	n:700000
Cons ci ratio: 2.487400e-03	ci left: 7.791508e-01	ci right 7.810926e-01	k: 546086	n:700000
KS ci ratio: 3.411598e-01	ci left: 1.564720e-04	ci right 2.220675e-04	k: 131	n:700000
TNXB   700000 perm   454 sec   (1541 perm/sec)   p_kst 1.871429e-04   p_cons 7.801229e-01   p_joint 9.728571e-04

Joint ci ratio: 1.490511e-01	ci left: 9.006928e-04	ci right 1.047090e-03	k: 690	n:710000
Cons ci ratio: 2.469742e-03	ci left: 7.791686e-01	ci right 7.810967e-01	k: 553895	n:710000
KS ci ratio: 3.336599e-01	ci left: 1.620031e-04	ci right 2.281036e-04	k: 137	n:710000
TNXB   710000 perm   464 sec   (1530 perm/sec)   p_kst 1.929577e-04   p_cons 7.801338e-01   p_joint 9.718310e-04

Joint ci ratio: 1.490521e-01	ci left: 8.881827e-04	ci right 1.032548e-03	k: 690	n:720000
Cons ci ratio: 2.452356e-03	ci left: 7.791999e-01	ci right 7.811145e-01	k: 561714	n:720000
KS ci ratio: 3.289264e-01	ci left: 1.648467e-04	ci right 2.309514e-04	k: 141	n:720000
TNXB   720000 perm   473 sec   (1522 perm/sec)   p_kst 1.958333e-04   p_cons 7.801583e-01   p_joint 9.583333e-04

Joint ci ratio: 1.487303e-01	ci left: 8.799720e-04	ci right 1.022666e-03	k: 693	n:730000
Cons ci ratio: 2.435847e-03	ci left: 7.791577e-01	ci right 7.810593e-01	k: 569480	n:730000
KS ci ratio: 3.255057e-01	ci left: 1.663606e-04	ci right 2.322336e-04	k: 144	n:730000
TNXB   730000 perm   482 sec   (1514 perm/sec)   p_kst 1.972603e-04   p_cons 7.801096e-01   p_joint 9.493151e-04

Joint ci ratio: 1.477753e-01	ci left: 8.797915e-04	ci right 1.021459e-03	k: 702	n:740000
Cons ci ratio: 2.419181e-03	ci left: 7.791857e-01	ci right 7.810743e-01	k: 577297	n:740000
KS ci ratio: 3.232838e-01	ci left: 1.665951e-04	ci right 2.320174e-04	k: 146	n:740000
TNXB   740000 perm   491 sec   (1506 perm/sec)   p_kst 1.972973e-04   p_cons 7.801311e-01   p_joint 9.486486e-04

Joint ci ratio: 1.479871e-01	ci left: 8.654925e-04	ci right 1.005075e-03	k: 700	n:750000
Cons ci ratio: 2.402871e-03	ci left: 7.792103e-01	ci right 7.810862e-01	k: 585112	n:750000
KS ci ratio: 3.232842e-01	ci left: 1.643738e-04	ci right 2.289238e-04	k: 146	n:750000
TNXB   750000 perm   501 sec   (1498 perm/sec)   p_kst 1.946667e-04   p_cons 7.801493e-01   p_joint 9.333333e-04

Joint ci ratio: 1.485191e-01	ci left: 8.477690e-04	ci right 9.850283e-04	k: 695	n:760000
Cons ci ratio: 2.386768e-03	ci left: 7.792514e-01	ci right 7.811148e-01	k: 592940	n:760000
KS ci ratio: 3.211072e-01	ci left: 1.646298e-04	ci right 2.287554e-04	k: 148	n:760000
TNXB   760000 perm   510 sec   (1490 perm/sec)   p_kst 1.947368e-04   p_cons 7.801842e-01   p_joint 9.144737e-04

Joint ci ratio: 1.479889e-01	ci left: 8.430115e-04	ci right 9.789701e-04	k: 700	n:770000
Cons ci ratio: 2.370463e-03	ci left: 7.793670e-01	ci right 7.812179e-01	k: 600826	n:770000
KS ci ratio: 3.200353e-01	ci left: 1.636859e-04	ci right 2.271874e-04	k: 149	n:770000
TNXB   770000 perm   520 sec   (1482 perm/sec)   p_kst 1.935065e-04   p_cons 7.802935e-01   p_joint 9.090909e-04

Joint ci ratio: 1.476738e-01	ci left: 8.359073e-04	ci right 9.704078e-04	k: 703	n:780000
Cons ci ratio: 2.355113e-03	ci left: 7.793885e-01	ci right 7.812274e-01	k: 608641	n:780000
KS ci ratio: 3.168819e-01	ci left: 1.651262e-04	ci right 2.284272e-04	k: 152	n:780000
TNXB   780000 perm   529 sec   (1473 perm/sec)   p_kst 1.948718e-04   p_cons 7.803090e-01   p_joint 9.012821e-04

Joint ci ratio: 1.474651e-01	ci left: 8.277641e-04	ci right 9.607496e-04	k: 705	n:790000
Cons ci ratio: 2.340445e-03	ci left: 7.793524e-01	ci right 7.811798e-01	k: 616411	n:790000
KS ci ratio: 3.158516e-01	ci left: 1.642013e-04	ci right 2.269018e-04	k: 153	n:790000
TNXB   790000 perm   539 sec   (1466 perm/sec)   p_kst 1.936709e-04   p_cons 7.802671e-01   p_joint 8.924051e-04

Joint ci ratio: 1.465341e-01	ci left: 8.282533e-04	ci right 9.604037e-04	k: 714	n:800000
Cons ci ratio: 2.325879e-03	ci left: 7.793422e-01	ci right 7.811582e-01	k: 624201	n:800000
KS ci ratio: 3.148313e-01	ci left: 1.632998e-04	ci right 2.254141e-04	k: 154	n:800000
TNXB   800000 perm   549 sec   (1458 perm/sec)   p_kst 1.925000e-04   p_cons 7.802512e-01   p_joint 8.925000e-04

Joint ci ratio: 1.453194e-01	ci left: 8.323020e-04	ci right 9.639020e-04	k: 726	n:810000
Cons ci ratio: 2.311498e-03	ci left: 7.793448e-01	ci right 7.811495e-01	k: 632001	n:810000
KS ci ratio: 3.118278e-01	ci left: 1.646963e-04	ci right 2.266252e-04	k: 157	n:810000
TNXB   810000 perm   558 sec   (1450 perm/sec)   p_kst 1.938272e-04   p_cons 7.802481e-01   p_joint 8.962963e-04

Joint ci ratio: 1.445265e-01	ci left: 8.315542e-04	ci right 9.622568e-04	k: 734	n:820000
Cons ci ratio: 2.297912e-03	ci left: 7.792679e-01	ci right 7.810618e-01	k: 639736	n:820000
KS ci ratio: 3.108459e-01	ci left: 1.638120e-04	ci right 2.251760e-04	k: 158	n:820000
TNXB   820000 perm   568 sec   (1443 perm/sec)   p_kst 1.926829e-04   p_cons 7.801659e-01   p_joint 8.951220e-04

Joint ci ratio: 1.435531e-01	ci left: 8.331496e-04	ci right 9.631454e-04	k: 744	n:830000
Cons ci ratio: 2.284088e-03	ci left: 7.792641e-01	ci right 7.810472e-01	k: 647530	n:830000
KS ci ratio: 3.070078e-01	ci left: 1.662842e-04	ci right 2.276546e-04	k: 162	n:830000
TNXB   830000 perm   578 sec   (1436 perm/sec)   p_kst 1.951807e-04   p_cons 7.801566e-01   p_joint 8.963855e-04

Joint ci ratio: 1.434576e-01	ci left: 8.243786e-04	ci right 9.529129e-04	k: 745	n:840000
Cons ci ratio: 2.270472e-03	ci left: 7.792664e-01	ci right 7.810388e-01	k: 655329	n:840000
KS ci ratio: 3.070081e-01	ci left: 1.643046e-04	ci right 2.249445e-04	k: 162	n:840000
TNXB   840000 perm   588 sec   (1428 perm/sec)   p_kst 1.928571e-04   p_cons 7.801536e-01   p_joint 8.869048e-04

Joint ci ratio: 1.441367e-01	ci left: 8.067405e-04	ci right 9.331714e-04	k: 738	n:850000
Cons ci ratio: 2.257305e-03	ci left: 7.792368e-01	ci right 7.809989e-01	k: 663101	n:850000
KS ci ratio: 3.051418e-01	ci left: 1.645438e-04	ci right 2.248312e-04	k: 164	n:850000
TNXB   850000 perm   598 sec   (1421 perm/sec)   p_kst 1.929412e-04   p_cons 7.801188e-01   p_joint 8.682353e-04

Joint ci ratio: 1.439427e-01	ci left: 7.996013e-04	ci right 9.247302e-04	k: 740	n:860000
Cons ci ratio: 2.244601e-03	ci left: 7.791719e-01	ci right 7.809239e-01	k: 670842	n:860000
KS ci ratio: 3.033091e-01	ci left: 1.647786e-04	ci right 2.247194e-04	k: 166	n:860000
TNXB   860000 perm   608 sec   (1414 perm/sec)   p_kst 1.930233e-04   p_cons 7.800488e-01   p_joint 8.604651e-04

Joint ci ratio: 1.434598e-01	ci left: 7.959509e-04	ci right 9.200549e-04	k: 745	n:870000
Cons ci ratio: 2.231413e-03	ci left: 7.792155e-01	ci right 7.809573e-01	k: 678676	n:870000
KS ci ratio: 3.015090e-01	ci left: 1.650091e-04	ci right 2.246092e-04	k: 168	n:870000
TNXB   870000 perm   619 sec   (1406 perm/sec)   p_kst 1.931034e-04   p_cons 7.800874e-01   p_joint 8.563218e-04

Joint ci ratio: 1.428865e-01	ci left: 7.934799e-04	ci right 9.166621e-04	k: 751	n:880000
Cons ci ratio: 2.218778e-03	ci left: 7.792081e-01	ci right 7.809400e-01	k: 686466	n:880000
KS ci ratio: 3.006211e-01	ci left: 1.641845e-04	ci right 2.232788e-04	k: 169	n:880000
TNXB   880000 perm   629 sec   (1398 perm/sec)   p_kst 1.920455e-04   p_cons 7.800750e-01   p_joint 8.534091e-04

Joint ci ratio: 1.423201e-01	ci left: 7.910653e-04	ci right 9.133445e-04	k: 757	n:890000
Cons ci ratio: 2.205857e-03	ci left: 7.792786e-01	ci right 7.810005e-01	k: 694325	n:890000
KS ci ratio: 2.997409e-01	ci left: 1.633787e-04	ci right 2.219780e-04	k: 170	n:890000
TNXB   890000 perm   640 sec   (1391 perm/sec)   p_kst 1.910112e-04   p_cons 7.801404e-01   p_joint 8.505618e-04

Joint ci ratio: 1.416676e-01	ci left: 7.897771e-04	ci right 9.112502e-04	k: 764	n:900000
Cons ci ratio: 2.193401e-03	ci left: 7.793096e-01	ci right 7.810219e-01	k: 702150	n:900000
KS ci ratio: 2.997412e-01	ci left: 1.615634e-04	ci right 2.195116e-04	k: 170	n:900000
TNXB   900000 perm   650 sec   (1384 perm/sec)   p_kst 1.888889e-04   p_cons 7.801667e-01   p_joint 8.488889e-04

Joint ci ratio: 1.409326e-01	ci left: 7.895787e-04	ci right 9.103383e-04	k: 772	n:910000
Cons ci ratio: 2.181376e-03	ci left: 7.793048e-01	ci right 7.810077e-01	k: 709943	n:910000
KS ci ratio: 2.997416e-01	ci left: 1.597879e-04	ci right 2.170994e-04	k: 170	n:910000
TNXB   910000 perm   661 sec   (1377 perm/sec)   p_kst 1.868132e-04   p_cons 7.801571e-01   p_joint 8.483516e-04

Joint ci ratio: 1.402090e-01	ci left: 7.893861e-04	ci right 9.094446e-04	k: 780	n:920000
Cons ci ratio: 2.168963e-03	ci left: 7.793927e-01	ci right 7.810860e-01	k: 717821	n:920000
KS ci ratio: 2.971462e-01	ci left: 1.610679e-04	ci right 2.182439e-04	k: 173	n:920000
TNXB   920000 perm   671 sec   (1370 perm/sec)   p_kst 1.880435e-04   p_cons 7.802402e-01   p_joint 8.478261e-04

Joint ci ratio: 1.408428e-01	ci left: 7.736354e-04	ci right 8.918748e-04	k: 773	n:930000
Cons ci ratio: 2.157381e-03	ci left: 7.793796e-01	ci right 7.810638e-01	k: 725607	n:930000
KS ci ratio: 2.962961e-01	ci left: 1.603312e-04	ci right 2.170523e-04	k: 174	n:930000
TNXB   930000 perm   682 sec   (1363 perm/sec)   p_kst 1.870968e-04   p_cons 7.802226e-01   p_joint 8.311828e-04

Joint ci ratio: 1.404806e-01	ci left: 7.695107e-04	ci right 8.867919e-04	k: 777	n:940000
Cons ci ratio: 2.146003e-03	ci left: 7.793636e-01	ci right 7.810389e-01	k: 733390	n:940000
KS ci ratio: 2.954533e-01	ci left: 1.596104e-04	ci right 2.158858e-04	k: 175	n:940000
TNXB   940000 perm   693 sec   (1356 perm/sec)   p_kst 1.861702e-04   p_cons 7.802021e-01   p_joint 8.265957e-04

Joint ci ratio: 1.408440e-01	ci left: 7.573479e-04	ci right 8.730991e-04	k: 773	n:950000
Cons ci ratio: 2.134633e-03	ci left: 7.793754e-01	ci right 7.810419e-01	k: 741199	n:950000
KS ci ratio: 2.954536e-01	ci left: 1.579303e-04	ci right 2.136134e-04	k: 175	n:950000
TNXB   950000 perm   704 sec   (1350 perm/sec)   p_kst 1.842105e-04   p_cons 7.802095e-01   p_joint 8.136842e-04

Joint ci ratio: 1.394983e-01	ci left: 7.645361e-04	ci right 8.801766e-04	k: 788	n:960000
Cons ci ratio: 2.123474e-03	ci left: 7.793817e-01	ci right 7.810395e-01	k: 749003	n:960000
KS ci ratio: 2.929671e-01	ci left: 1.591796e-04	ci right 2.147432e-04	k: 178	n:960000
TNXB   960000 perm   715 sec   (1343 perm/sec)   p_kst 1.854167e-04   p_cons 7.802115e-01   p_joint 8.208333e-04

Joint ci ratio: 1.389710e-01	ci left: 7.626243e-04	ci right 8.775036e-04	k: 794	n:970000
Cons ci ratio: 2.112526e-03	ci left: 7.793818e-01	ci right 7.810310e-01	k: 756801	n:970000
KS ci ratio: 2.921523e-01	ci left: 1.584938e-04	ci right 2.136357e-04	k: 179	n:970000
TNXB   970000 perm   726 sec   (1337 perm/sec)   p_kst 1.845361e-04   p_cons 7.802072e-01   p_joint 8.185567e-04

Joint ci ratio: 1.383633e-01	ci left: 7.617375e-04	ci right 8.759400e-04	k: 801	n:980000
Cons ci ratio: 2.101952e-03	ci left: 7.793481e-01	ci right 7.809890e-01	k: 764566	n:980000
KS ci ratio: 2.913442e-01	ci left: 1.578223e-04	ci right 2.125506e-04	k: 180	n:980000
TNXB   980000 perm   737 sec   (1330 perm/sec)   p_kst 1.836735e-04   p_cons 7.801694e-01   p_joint 8.173469e-04

Joint ci ratio: 1.378488e-01	ci left: 7.598943e-04	ci right 8.733621e-04	k: 807	n:990000
Cons ci ratio: 2.091233e-03	ci left: 7.793647e-01	ci right 7.809973e-01	k: 772380	n:990000
KS ci ratio: 2.905429e-01	ci left: 1.571645e-04	ci right 2.114873e-04	k: 181	n:990000
TNXB   990000 perm   748 sec   (1324 perm/sec)   p_kst 1.828283e-04   p_cons 7.801818e-01   p_joint 8.151515e-04

Joint ci ratio: 1.387981e-01	ci left: 7.416756e-04	ci right 8.532487e-04	k: 796	n:1000000
Cons ci ratio: 2.080598e-03	ci left: 7.793941e-01	ci right 7.810183e-01	k: 780207	n:1000000
KS ci ratio: 2.905431e-01	ci left: 1.555928e-04	ci right 2.093724e-04	k: 181	n:1000000
TNXB   1000000 perm   759 sec   (1318 perm/sec)   p_kst 1.810000e-04   p_cons 7.802070e-01   p_joint 7.960000e-04

Joint ci ratio: 1.379353e-01	ci left: 7.438905e-04	ci right 8.550441e-04	k: 806	n:1010000
Cons ci ratio: 2.070213e-03	ci left: 7.794079e-01	ci right 7.810241e-01	k: 788019	n:1010000
KS ci ratio: 2.874017e-01	ci left: 1.577257e-04	ci right 2.115460e-04	k: 185	n:1010000
TNXB   1010000 perm   770 sec   (1312 perm/sec)   p_kst 1.831683e-04   p_cons 7.802168e-01   p_joint 7.980198e-04

Joint ci ratio: 1.390614e-01	ci left: 7.242935e-04	ci right 8.334755e-04	k: 793	n:1020000
Cons ci ratio: 2.060259e-03	ci left: 7.793754e-01	ci right 7.809838e-01	k: 795784	n:1020000
KS ci ratio: 2.858689e-01	ci left: 1.579992e-04	ci right 2.115734e-04	k: 187	n:1020000
TNXB   1020000 perm   781 sec   (1305 perm/sec)   p_kst 1.833333e-04   p_cons 7.801804e-01   p_joint 7.774510e-04

Joint ci ratio: 1.386258e-01	ci left: 7.219472e-04	ci right 8.304065e-04	k: 798	n:1030000
Cons ci ratio: 2.050017e-03	ci left: 7.794155e-01	ci right 7.810159e-01	k: 803623	n:1030000
KS ci ratio: 2.858692e-01	ci left: 1.564652e-04	ci right 2.095193e-04	k: 187	n:1030000
TNXB   1030000 perm   793 sec   (1299 perm/sec)   p_kst 1.815534e-04   p_cons 7.802165e-01   p_joint 7.747573e-04

Joint ci ratio: 1.642899e-01	ci left: 5.021675e-04	ci right 5.929594e-04	k: 568	n:1040000
Cons ci ratio: 2.040144e-03	ci left: 7.794183e-01	ci right 7.810109e-01	k: 811424	n:1040000
KS ci ratio: 2.921541e-01	ci left: 1.478258e-04	ci right 1.992566e-04	k: 179	n:1040000
TNXB   1040000 perm   805 sec   (1292 perm/sec)   p_kst 1.721154e-04   p_cons 7.802154e-01   p_joint 5.461538e-04

Joint ci ratio: 1.638587e-01	ci left: 5.001247e-04	ci right 5.902866e-04	k: 571	n:1050000
Cons ci ratio: 2.030446e-03	ci left: 7.794153e-01	ci right 7.810003e-01	k: 819219	n:1050000
KS ci ratio: 2.913461e-01	ci left: 1.473007e-04	ci right 1.983808e-04	k: 180	n:1050000
TNXB   1050000 perm   816 sec   (1287 perm/sec)   p_kst 1.714286e-04   p_cons 7.802086e-01   p_joint 5.438095e-04

Joint ci ratio: 1.632889e-01	ci left: 4.990256e-04	ci right 5.886458e-04	k: 575	n:1060000
Cons ci ratio: 2.020757e-03	ci left: 7.794340e-01	ci right 7.810116e-01	k: 827037	n:1060000
KS ci ratio: 2.905446e-01	ci left: 1.467856e-04	ci right 1.975213e-04	k: 181	n:1060000
TNXB   1060000 perm   828 sec   (1281 perm/sec)   p_kst 1.707547e-04   p_cons 7.802236e-01   p_joint 5.424528e-04

Joint ci ratio: 1.635737e-01	ci left: 4.925690e-04	ci right 5.811991e-04	k: 573	n:1070000
Cons ci ratio: 2.011168e-03	ci left: 7.794590e-01	ci right 7.810292e-01	k: 834862	n:1070000
KS ci ratio: 2.905449e-01	ci left: 1.454137e-04	ci right 1.956754e-04	k: 181	n:1070000
TNXB   1070000 perm   839 sec   (1275 perm/sec)   p_kst 1.691589e-04   p_cons 7.802449e-01   p_joint 5.355140e-04

Joint ci ratio: 1.627254e-01	ci left: 4.933369e-04	ci right 5.815998e-04	k: 579	n:1080000
Cons ci ratio: 2.001875e-03	ci left: 7.794558e-01	ci right 7.810186e-01	k: 842657	n:1080000
KS ci ratio: 2.889615e-01	ci left: 1.457846e-04	ci right 1.958496e-04	k: 183	n:1080000
TNXB   1080000 perm   851 sec   (1269 perm/sec)   p_kst 1.694444e-04   p_cons 7.802380e-01   p_joint 5.361111e-04

Joint ci ratio: 1.623063e-01	ci left: 4.914512e-04	ci right 5.791282e-04	k: 582	n:1090000
Cons ci ratio: 1.992860e-03	ci left: 7.794269e-01	ci right 7.809826e-01	k: 850424	n:1090000
KS ci ratio: 2.889617e-01	ci left: 1.444471e-04	ci right 1.940528e-04	k: 183	n:1090000
TNXB   1090000 perm   863 sec   (1263 perm/sec)   p_kst 1.678899e-04   p_cons 7.802055e-01   p_joint 5.339450e-04

Joint ci ratio: 1.681817e-01	ci left: 4.521223e-04	ci right 5.359988e-04	k: 542	n:1100000
Cons ci ratio: 1.983734e-03	ci left: 7.794386e-01	ci right 7.809872e-01	k: 858235	n:1100000
KS ci ratio: 2.881798e-01	ci left: 1.439772e-04	ci right 1.932634e-04	k: 184	n:1100000
TNXB   1100000 perm   875 sec   (1257 perm/sec)   p_kst 1.672727e-04   p_cons 7.802136e-01   p_joint 4.927273e-04

Joint ci ratio: 1.672601e-01	ci left: 4.532277e-04	ci right 5.368020e-04	k: 548	n:1110000
Cons ci ratio: 1.974436e-03	ci left: 7.795015e-01	ci right 7.810430e-01	k: 866103	n:1110000
KS ci ratio: 2.858710e-01	ci left: 1.451883e-04	ci right 1.944190e-04	k: 187	n:1110000
TNXB   1110000 perm   887 sec   (1251 perm/sec)   p_kst 1.684685e-04   p_cons 7.802730e-01   p_joint 4.936937e-04

Joint ci ratio: 1.665036e-01	ci left: 4.534589e-04	ci right 5.366597e-04	k: 553	n:1120000
Cons ci ratio: 1.965432e-03	ci left: 7.795347e-01	ci right 7.810692e-01	k: 873939	n:1120000
KS ci ratio: 2.858713e-01	ci left: 1.438920e-04	ci right 1.926832e-04	k: 187	n:1120000
TNXB   1120000 perm   899 sec   (1246 perm/sec)   p_kst 1.669643e-04   p_cons 7.803027e-01   p_joint 4.937500e-04

Joint ci ratio: 1.660547e-01	ci left: 4.519903e-04	ci right 5.346758e-04	k: 556	n:1130000
Cons ci ratio: 1.957009e-03	ci left: 7.794867e-01	ci right 7.810145e-01	k: 881684	n:1130000
KS ci ratio: 2.851141e-01	ci left: 1.434402e-04	ci right 1.919262e-04	k: 188	n:1130000
TNXB   1130000 perm   911 sec   (1240 perm/sec)   p_kst 1.663717e-04   p_cons 7.802513e-01   p_joint 4.920354e-04

Joint ci ratio: 1.656095e-01	ci left: 4.505478e-04	ci right 5.327264e-04	k: 559	n:1140000
Cons ci ratio: 1.948394e-03	ci left: 7.794923e-01	ci right 7.810133e-01	k: 889489	n:1140000
KS ci ratio: 2.843629e-01	ci left: 1.429965e-04	ci right 1.911823e-04	k: 189	n:1140000
TNXB   1140000 perm   923 sec   (1234 perm/sec)   p_kst 1.657895e-04   p_cons 7.802535e-01   p_joint 4.903509e-04

Joint ci ratio: 1.666552e-01	ci left: 4.407959e-04	ci right 5.217544e-04	k: 552	n:1150000
Cons ci ratio: 1.940153e-03	ci left: 7.794516e-01	ci right 7.809661e-01	k: 897241	n:1150000
KS ci ratio: 2.836176e-01	ci left: 1.425607e-04	ci right 1.904512e-04	k: 190	n:1150000
TNXB   1150000 perm   936 sec   (1229 perm/sec)   p_kst 1.652174e-04   p_cons 7.802096e-01   p_joint 4.800000e-04

Joint ci ratio: 1.662051e-01	ci left: 4.394744e-04	ci right 5.199504e-04	k: 555	n:1160000
Cons ci ratio: 1.931831e-03	ci left: 7.794444e-01	ci right 7.809525e-01	k: 905031	n:1160000
KS ci ratio: 2.828781e-01	ci left: 1.421326e-04	ci right 1.897325e-04	k: 191	n:1160000
TNXB   1160000 perm   948 sec   (1224 perm/sec)   p_kst 1.646552e-04   p_cons 7.801991e-01   p_joint 4.784483e-04

Joint ci ratio: 1.651685e-01	ci left: 4.414531e-04	ci right 5.217371e-04	k: 562	n:1170000
Cons ci ratio: 1.923112e-03	ci left: 7.795272e-01	ci right 7.810286e-01	k: 912926	n:1170000
KS ci ratio: 2.821444e-01	ci left: 1.417119e-04	ci right 1.890260e-04	k: 192	n:1170000
TNXB   1170000 perm   960 sec   (1218 perm/sec)   p_kst 1.641026e-04   p_cons 7.802786e-01   p_joint 4.803419e-04

Joint ci ratio: 1.650223e-01	ci left: 4.385244e-04	ci right 5.181981e-04	k: 563	n:1180000
Cons ci ratio: 1.915101e-03	ci left: 7.795026e-01	ci right 7.809977e-01	k: 920696	n:1180000
KS ci ratio: 2.806937e-01	ci left: 1.420863e-04	ci right 1.892383e-04	k: 194	n:1180000
TNXB   1180000 perm   973 sec   (1213 perm/sec)   p_kst 1.644068e-04   p_cons 7.802508e-01   p_joint 4.771186e-04

Joint ci ratio: 1.663559e-01	ci left: 4.275897e-04	ci right 5.059674e-04	k: 554	n:1190000
Cons ci ratio: 1.906885e-03	ci left: 7.795331e-01	ci right 7.810218e-01	k: 928531	n:1190000
KS ci ratio: 2.792652e-01	ci left: 1.424550e-04	ci right 1.894464e-04	k: 196	n:1190000
TNXB   1190000 perm   985 sec   (1208 perm/sec)   p_kst 1.647059e-04   p_cons 7.802782e-01   p_joint 4.655462e-04

Joint ci ratio: 1.654638e-01	ci left: 4.288188e-04	ci right 5.069584e-04	k: 560	n:1200000
Cons ci ratio: 1.898954e-03	ci left: 7.795306e-01	ci right 7.810131e-01	k: 936327	n:1200000
KS ci ratio: 2.771626e-01	ci left: 1.435934e-04	ci right 1.905416e-04	k: 199	n:1200000
TNXB   1200000 perm   998 sec   (1203 perm/sec)   p_kst 1.658333e-04   p_cons 7.802725e-01   p_joint 4.666667e-04

Joint ci ratio: 1.720319e-01	ci left: 3.920289e-04	ci right 4.665948e-04	k: 518	n:1210000
Cons ci ratio: 1.891058e-03	ci left: 7.795397e-01	ci right 7.810160e-01	k: 944137	n:1210000
KS ci ratio: 2.771628e-01	ci left: 1.424067e-04	ci right 1.889669e-04	k: 199	n:1210000
TNXB   1210000 perm   1011 sec   (1197 perm/sec)   p_kst 1.644628e-04   p_cons 7.802785e-01   p_joint 4.280992e-04

Joint ci ratio: 1.712091e-01	ci left: 3.927378e-04	ci right 4.670444e-04	k: 523	n:1220000
Cons ci ratio: 1.883124e-03	ci left: 7.795732e-01	ci right 7.810435e-01	k: 951977	n:1220000
KS ci ratio: 2.757873e-01	ci left: 1.427652e-04	ci right 1.891707e-04	k: 201	n:1220000
TNXB   1220000 perm   1024 sec   (1192 perm/sec)   p_kst 1.647541e-04   p_cons 7.803090e-01   p_joint 4.286885e-04

Joint ci ratio: 1.707212e-01	ci left: 3.918795e-04	ci right 4.657906e-04	k: 526	n:1230000
Cons ci ratio: 1.875423e-03	ci left: 7.795819e-01	ci right 7.810461e-01	k: 959787	n:1230000
KS ci ratio: 2.744320e-01	ci left: 1.431183e-04	ci right 1.893706e-04	k: 203	n:1230000
TNXB   1230000 perm   1036 sec   (1187 perm/sec)   p_kst 1.650407e-04   p_cons 7.803146e-01   p_joint 4.276423e-04

Joint ci ratio: 1.699170e-01	ci left: 3.925796e-04	ci right 4.662382e-04	k: 531	n:1240000
Cons ci ratio: 1.867679e-03	ci left: 7.796154e-01	ci right 7.810736e-01	k: 967628	n:1240000
KS ci ratio: 2.737619e-01	ci left: 1.427152e-04	ci right 1.887052e-04	k: 204	n:1240000
TNXB   1240000 perm   1049 sec   (1182 perm/sec)   p_kst 1.645161e-04   p_cons 7.803452e-01   p_joint 4.282258e-04

Joint ci ratio: 1.691241e-01	ci left: 3.932692e-04	ci right 4.666778e-04	k: 536	n:1250000
Cons ci ratio: 1.860499e-03	ci left: 7.795619e-01	ci right 7.810144e-01	k: 975361	n:1250000
KS ci ratio: 2.737621e-01	ci left: 1.415734e-04	ci right 1.871955e-04	k: 204	n:1250000
TNXB   1250000 perm   1063 sec   (1176 perm/sec)   p_kst 1.632000e-04   p_cons 7.802888e-01   p_joint 4.288000e-04

Joint ci ratio: 1.688102e-01	ci left: 3.916682e-04	ci right 4.646285e-04	k: 538	n:1260000
Cons ci ratio: 1.852762e-03	ci left: 7.796277e-01	ci right 7.810742e-01	k: 983243	n:1260000
KS ci ratio: 2.730969e-01	ci left: 1.411891e-04	ci right 1.865578e-04	k: 205	n:1260000
TNXB   1260000 perm   1076 sec   (1171 perm/sec)   p_kst 1.626984e-04   p_cons 7.803516e-01   p_joint 4.269841e-04

Joint ci ratio: 1.697583e-01	ci left: 3.840598e-04	ci right 4.560457e-04	k: 532	n:1270000
Cons ci ratio: 1.845286e-03	ci left: 7.796616e-01	ci right 7.811024e-01	k: 991086	n:1270000
KS ci ratio: 2.717807e-01	ci left: 1.415446e-04	ci right 1.867709e-04	k: 207	n:1270000
TNXB   1270000 perm   1090 sec   (1166 perm/sec)   p_kst 1.629921e-04   p_cons 7.803827e-01   p_joint 4.188976e-04

Joint ci ratio: 1.689676e-01	ci left: 3.848000e-04	ci right 4.565545e-04	k: 537	n:1280000
Cons ci ratio: 1.837829e-03	ci left: 7.797084e-01	ci right 7.811434e-01	k: 998946	n:1280000
KS ci ratio: 2.711298e-01	ci left: 1.411669e-04	ci right 1.861461e-04	k: 208	n:1280000
TNXB   1280000 perm   1103 sec   (1161 perm/sec)   p_kst 1.625000e-04   p_cons 7.804266e-01   p_joint 4.195312e-04

Joint ci ratio: 1.678788e-01	ci left: 3.870148e-04	ci right 4.586702e-04	k: 544	n:1290000
Cons ci ratio: 1.830713e-03	ci left: 7.797071e-01	ci right 7.811366e-01	k: 1006745	n:1290000
KS ci ratio: 2.685717e-01	ci left: 1.429636e-04	ci right 1.880131e-04	k: 212	n:1290000
TNXB   1290000 perm   1116 sec   (1156 perm/sec)   p_kst 1.643411e-04   p_cons 7.804225e-01   p_joint 4.217054e-04

Joint ci ratio: 1.675718e-01	ci left: 3.855116e-04	ci right 4.567450e-04	k: 546	n:1300000
Cons ci ratio: 1.823843e-03	ci left: 7.796750e-01	ci right 7.810991e-01	k: 1014504	n:1300000
KS ci ratio: 2.685719e-01	ci left: 1.418639e-04	ci right 1.865669e-04	k: 212	n:1300000
TNXB   1300000 perm   1129 sec   (1151 perm/sec)   p_kst 1.630769e-04   p_cons 7.803877e-01   p_joint 4.200000e-04

Joint ci ratio: 1.672664e-01	ci left: 3.840315e-04	ci right 4.548490e-04	k: 548	n:1310000
Cons ci ratio: 1.816897e-03	ci left: 7.796725e-01	ci right 7.810911e-01	k: 1022301	n:1310000
KS ci ratio: 2.673197e-01	ci left: 1.422051e-04	ci right 1.867717e-04	k: 214	n:1310000
TNXB   1310000 perm   1143 sec   (1146 perm/sec)   p_kst 1.633588e-04   p_cons 7.803824e-01   p_joint 4.183206e-04

Joint ci ratio: 1.674193e-01	ci left: 3.803962e-04	ci right 4.506140e-04	k: 547	n:1320000
Cons ci ratio: 1.809901e-03	ci left: 7.796943e-01	ci right 7.811075e-01	k: 1030130	n:1320000
KS ci ratio: 2.673199e-01	ci left: 1.411278e-04	ci right 1.853568e-04	k: 214	n:1320000
TNXB   1320000 perm   1157 sec   (1141 perm/sec)   p_kst 1.621212e-04   p_cons 7.804015e-01   p_joint 4.143939e-04

Joint ci ratio: 1.674195e-01	ci left: 3.775361e-04	ci right 4.472260e-04	k: 547	n:1330000
Cons ci ratio: 1.803206e-03	ci left: 7.796736e-01	ci right 7.810815e-01	k: 1037903	n:1330000
KS ci ratio: 2.673201e-01	ci left: 1.400667e-04	ci right 1.839632e-04	k: 214	n:1330000
TNXB   1330000 perm   1170 sec   (1137 perm/sec)   p_kst 1.609023e-04   p_cons 7.803782e-01   p_joint 4.112782e-04

Joint ci ratio: 1.671150e-01	ci left: 3.761487e-04	ci right 4.454435e-04	k: 549	n:1340000
Cons ci ratio: 1.796339e-03	ci left: 7.797003e-01	ci right 7.811029e-01	k: 1045739	n:1340000
KS ci ratio: 2.660853e-01	ci left: 1.404141e-04	ci right 1.841824e-04	k: 216	n:1340000
TNXB   1340000 perm   1184 sec   (1132 perm/sec)   p_kst 1.611940e-04   p_cons 7.804022e-01   p_joint 4.097015e-04

Joint ci ratio: 1.665106e-01	ci left: 3.762016e-04	ci right 4.452304e-04	k: 553	n:1350000
Cons ci ratio: 1.789933e-03	ci left: 7.796532e-01	ci right 7.810507e-01	k: 1053476	n:1350000
KS ci ratio: 2.642647e-01	ci left: 1.414486e-04	ci right 1.851877e-04	k: 219	n:1350000
TNXB   1350000 perm   1198 sec   (1127 perm/sec)   p_kst 1.622222e-04   p_cons 7.803526e-01   p_joint 4.096296e-04

Joint ci ratio: 1.675733e-01	ci left: 3.685034e-04	ci right 4.365948e-04	k: 546	n:1360000
Cons ci ratio: 1.783446e-03	ci left: 7.796356e-01	ci right 7.810280e-01	k: 1061252	n:1360000
KS ci ratio: 2.630716e-01	ci left: 1.417819e-04	ci right 1.853936e-04	k: 221	n:1360000
TNXB   1360000 perm   1211 sec   (1123 perm/sec)   p_kst 1.625000e-04   p_cons 7.803324e-01   p_joint 4.014706e-04

Joint ci ratio: 1.671157e-01	ci left: 3.679117e-04	ci right 4.356894e-04	k: 549	n:1370000
Cons ci ratio: 1.777214e-03	ci left: 7.795823e-01	ci right 7.809698e-01	k: 1068979	n:1370000
KS ci ratio: 2.618945e-01	ci left: 1.421108e-04	ci right 1.855960e-04	k: 223	n:1370000
TNXB   1370000 perm   1226 sec   (1118 perm/sec)   p_kst 1.627737e-04   p_cons 7.802766e-01   p_joint 4.007299e-04

Joint ci ratio: 1.668128e-01	ci left: 3.666344e-04	ci right 4.340420e-04	k: 551	n:1380000
Cons ci ratio: 1.770556e-03	ci left: 7.796249e-01	ci right 7.810072e-01	k: 1076837	n:1380000
KS ci ratio: 2.607331e-01	ci left: 1.424354e-04	ci right 1.857951e-04	k: 225	n:1380000
TNXB   1380000 perm   1239 sec   (1113 perm/sec)   p_kst 1.630435e-04   p_cons 7.803167e-01   p_joint 3.992754e-04

Joint ci ratio: 1.659135e-01	ci left: 3.681336e-04	ci right 4.354155e-04	k: 557	n:1390000
Cons ci ratio: 1.764210e-03	ci left: 7.796208e-01	ci right 7.809981e-01	k: 1084631	n:1390000
KS ci ratio: 2.607332e-01	ci left: 1.414106e-04	ci right 1.844585e-04	k: 225	n:1390000
TNXB   1390000 perm   1253 sec   (1109 perm/sec)   p_kst 1.618705e-04   p_cons 7.803101e-01   p_joint 4.007194e-04

Joint ci ratio: 1.707257e-01	ci left: 3.442934e-04	ci right 4.092313e-04	k: 526	n:1400000
Cons ci ratio: 1.757638e-03	ci left: 7.796740e-01	ci right 7.810463e-01	k: 1092505	n:1400000
KS ci ratio: 2.601584e-01	ci left: 1.410682e-04	ci right 1.839017e-04	k: 226	n:1400000
TNXB   1400000 perm   1267 sec   (1105 perm/sec)   p_kst 1.614286e-04   p_cons 7.803607e-01   p_joint 3.757143e-04

Joint ci ratio: 1.717065e-01	ci left: 3.377785e-04	ci right 4.018916e-04	k: 520	n:1410000
Cons ci ratio: 1.751516e-03	ci left: 7.796526e-01	ci right 7.810200e-01	k: 1100275	n:1410000
KS ci ratio: 2.590198e-01	ci left: 1.413939e-04	ci right 1.841080e-04	k: 228	n:1410000
TNXB   1410000 perm   1282 sec   (1100 perm/sec)   p_kst 1.617021e-04   p_cons 7.803369e-01   p_joint 3.687943e-04

Joint ci ratio: 1.713780e-01	ci left: 3.367478e-04	ci right 4.005302e-04	k: 522	n:1420000
Cons ci ratio: 1.745278e-03	ci left: 7.796667e-01	ci right 7.810293e-01	k: 1108095	n:1420000
KS ci ratio: 2.590199e-01	ci left: 1.403981e-04	ci right 1.828114e-04	k: 228	n:1420000
TNXB   1420000 perm   1296 sec   (1096 perm/sec)   p_kst 1.605634e-04   p_cons 7.803486e-01   p_joint 3.676056e-04

Joint ci ratio: 1.705645e-01	ci left: 3.377398e-04	ci right 4.013753e-04	k: 527	n:1430000
Cons ci ratio: 1.739067e-03	ci left: 7.796884e-01	ci right 7.810462e-01	k: 1115926	n:1430000
KS ci ratio: 2.567867e-01	ci left: 1.420328e-04	ci right 1.845106e-04	k: 232	n:1430000
TNXB   1430000 perm   1310 sec   (1091 perm/sec)   p_kst 1.622378e-04   p_cons 7.803678e-01   p_joint 3.685315e-04

Joint ci ratio: 1.696035e-01	ci left: 3.393837e-04	ci right 4.029318e-04	k: 533	n:1440000
Cons ci ratio: 1.733091e-03	ci left: 7.796764e-01	ci right 7.810295e-01	k: 1123709	n:1440000
KS ci ratio: 2.551493e-01	ci left: 1.429961e-04	ci right 1.854460e-04	k: 235	n:1440000
TNXB   1440000 perm   1325 sec   (1087 perm/sec)   p_kst 1.631944e-04   p_cons 7.803535e-01   p_joint 3.701389e-04

Joint ci ratio: 1.685025e-01	ci left: 3.416665e-04	ci right 4.051846e-04	k: 540	n:1450000
Cons ci ratio: 1.727207e-03	ci left: 7.796583e-01	ci right 7.810068e-01	k: 1131483	n:1450000
KS ci ratio: 2.524883e-01	ci left: 1.452389e-04	ci right 1.878342e-04	k: 240	n:1450000
TNXB   1450000 perm   1339 sec   (1083 perm/sec)   p_kst 1.655172e-04   p_cons 7.803331e-01   p_joint 3.724138e-04

Joint ci ratio: 1.683471e-01	ci left: 3.399824e-04	ci right 4.031231e-04	k: 541	n:1460000
Cons ci ratio: 1.721015e-03	ci left: 7.797139e-01	ci right 7.810576e-01	k: 1139364	n:1460000
KS ci ratio: 2.524885e-01	ci left: 1.442441e-04	ci right 1.865477e-04	k: 240	n:1460000
TNXB   1460000 perm   1353 sec   (1079 perm/sec)   p_kst 1.643836e-04   p_cons 7.803863e-01   p_joint 3.705479e-04

Joint ci ratio: 1.677293e-01	ci left: 3.402762e-04	ci right 4.032162e-04	k: 545	n:1470000
Cons ci ratio: 1.714766e-03	ci left: 7.797932e-01	ci right 7.811322e-01	k: 1147281	n:1470000
KS ci ratio: 2.519663e-01	ci left: 1.439001e-04	ci right 1.860018e-04	k: 241	n:1470000
TNXB   1470000 perm   1367 sec   (1075 perm/sec)   p_kst 1.639456e-04   p_cons 7.804633e-01   p_joint 3.707483e-04

Joint ci ratio: 1.674230e-01	ci left: 3.392717e-04	ci right 4.018998e-04	k: 547	n:1480000
Cons ci ratio: 1.709069e-03	ci left: 7.797741e-01	ci right 7.811086e-01	k: 1155054	n:1480000
KS ci ratio: 2.519665e-01	ci left: 1.429278e-04	ci right 1.847451e-04	k: 241	n:1480000
TNXB   1480000 perm   1382 sec   (1071 perm/sec)   p_kst 1.628378e-04   p_cons 7.804419e-01   p_joint 3.695946e-04

Joint ci ratio: 1.671185e-01	ci left: 3.382808e-04	ci right 4.006009e-04	k: 549	n:1490000
Cons ci ratio: 1.703466e-03	ci left: 7.797479e-01	ci right 7.810779e-01	k: 1162816	n:1490000
KS ci ratio: 2.514475e-01	ci left: 1.425974e-04	ci right 1.842186e-04	k: 242	n:1490000
TNXB   1490000 perm   1396 sec   (1067 perm/sec)   p_kst 1.624161e-04   p_cons 7.804134e-01   p_joint 3.684564e-04

Joint ci ratio: 1.666646e-01	ci left: 3.379420e-04	ci right 4.000137e-04	k: 552	n:1500000
Cons ci ratio: 1.697657e-03	ci left: 7.797747e-01	ci right 7.811002e-01	k: 1170657	n:1500000
KS ci ratio: 2.514477e-01	ci left: 1.416467e-04	ci right 1.829905e-04	k: 242	n:1500000
TNXB   1500000 perm   1411 sec   (1063 perm/sec)   p_kst 1.613333e-04   p_cons 7.804380e-01   p_joint 3.680000e-04

Joint ci ratio: 1.681930e-01	ci left: 3.293589e-04	ci right 3.904650e-04	k: 542	n:1510000
Cons ci ratio: 1.692017e-03	ci left: 7.797786e-01	ci right 7.810998e-01	k: 1178464	n:1510000
KS ci ratio: 2.499096e-01	ci left: 1.425706e-04	ci right 1.838899e-04	k: 245	n:1510000
TNXB   1510000 perm   1426 sec   (1059 perm/sec)   p_kst 1.622517e-04   p_cons 7.804397e-01   p_joint 3.589404e-04

Joint ci ratio: 1.678842e-01	ci left: 3.284525e-04	ci right 3.892672e-04	k: 544	n:1520000
Cons ci ratio: 1.686395e-03	ci left: 7.797904e-01	ci right 7.811072e-01	k: 1186283	n:1520000
KS ci ratio: 2.494033e-01	ci left: 1.422494e-04	ci right 1.833791e-04	k: 246	n:1520000
TNXB   1520000 perm   1441 sec   (1055 perm/sec)   p_kst 1.618421e-04   p_cons 7.804493e-01   p_joint 3.578947e-04

Joint ci ratio: 1.678844e-01	ci left: 3.263057e-04	ci right 3.867230e-04	k: 544	n:1530000
Cons ci ratio: 1.681171e-03	ci left: 7.797321e-01	ci right 7.810447e-01	k: 1193995	n:1530000
KS ci ratio: 2.494034e-01	ci left: 1.413196e-04	ci right 1.821805e-04	k: 246	n:1530000
TNXB   1530000 perm   1455 sec   (1051 perm/sec)   p_kst 1.607843e-04   p_cons 7.803889e-01   p_joint 3.555556e-04

Joint ci ratio: 1.677307e-01	ci left: 3.248089e-04	ci right 3.848885e-04	k: 545	n:1540000
Cons ci ratio: 1.675866e-03	ci left: 7.797011e-01	ci right 7.810095e-01	k: 1201748	n:1540000
KS ci ratio: 2.489001e-01	ci left: 1.410108e-04	ci right 1.816874e-04	k: 247	n:1540000
TNXB   1540000 perm   1470 sec   (1047 perm/sec)   p_kst 1.603896e-04   p_cons 7.803558e-01   p_joint 3.538961e-04

Joint ci ratio: 1.674244e-01	ci left: 3.239495e-04	ci right 3.837497e-04	k: 547	n:1550000
Cons ci ratio: 1.670503e-03	ci left: 7.796925e-01	ci right 7.809967e-01	k: 1209535	n:1550000
KS ci ratio: 2.479025e-01	ci left: 1.413110e-04	ci right 1.818857e-04	k: 249	n:1550000
TNXB   1550000 perm   1486 sec   (1043 perm/sec)   p_kst 1.606452e-04   p_cons 7.803452e-01   p_joint 3.529032e-04

Joint ci ratio: 1.669681e-01	ci left: 3.237155e-04	ci right 3.832933e-04	k: 550	n:1560000
Cons ci ratio: 1.665107e-03	ci left: 7.797014e-01	ci right 7.810014e-01	k: 1217349	n:1560000
KS ci ratio: 2.464282e-01	ci left: 1.422092e-04	ci right 1.827617e-04	k: 252	n:1560000
TNXB   1560000 perm   1501 sec   (1039 perm/sec)   p_kst 1.615385e-04   p_cons 7.803519e-01   p_joint 3.525641e-04

Joint ci ratio: 1.660662e-01	ci left: 3.253161e-04	ci right 3.848327e-04	k: 556	n:1570000
Cons ci ratio: 1.659751e-03	ci left: 7.797127e-01	ci right 7.810085e-01	k: 1225167	n:1570000
KS ci ratio: 2.449799e-01	ci left: 1.430966e-04	ci right 1.836258e-04	k: 255	n:1570000
TNXB   1570000 perm   1517 sec   (1035 perm/sec)   p_kst 1.624204e-04   p_cons 7.803611e-01   p_joint 3.541401e-04

Joint ci ratio: 1.663655e-01	ci left: 3.220439e-04	ci right 3.810786e-04	k: 554	n:1580000
Cons ci ratio: 1.654603e-03	ci left: 7.796916e-01	ci right 7.809833e-01	k: 1232934	n:1580000
KS ci ratio: 2.449801e-01	ci left: 1.421909e-04	ci right 1.824636e-04	k: 255	n:1580000
TNXB   1580000 perm   1532 sec   (1031 perm/sec)   p_kst 1.613924e-04   p_cons 7.803380e-01   p_joint 3.506329e-04

Joint ci ratio: 1.659177e-01	ci left: 3.218268e-04	ci right 3.806471e-04	k: 557	n:1590000
Cons ci ratio: 1.649574e-03	ci left: 7.796556e-01	ci right 7.809434e-01	k: 1240677	n:1590000
KS ci ratio: 2.445030e-01	ci left: 1.418870e-04	ci right 1.819835e-04	k: 256	n:1590000
TNXB   1590000 perm   1548 sec   (1027 perm/sec)   p_kst 1.610063e-04   p_cons 7.803000e-01   p_joint 3.503145e-04

Joint ci ratio: 1.648865e-01	ci left: 3.240093e-04	ci right 3.828240e-04	k: 564	n:1600000
Cons ci ratio: 1.644420e-03	ci left: 7.796557e-01	ci right 7.809395e-01	k: 1248477	n:1600000
KS ci ratio: 2.426220e-01	ci left: 1.433476e-04	ci right 1.834983e-04	k: 260	n:1600000
TNXB   1600000 perm   1563 sec   (1024 perm/sec)   p_kst 1.625000e-04   p_cons 7.802981e-01   p_joint 3.525000e-04

Joint ci ratio: 1.666667e-01	ci left: 3.148525e-04	ci right 3.726840e-04	k: 552	n:1610000
Cons ci ratio: 1.639400e-03	ci left: 7.796379e-01	ci right 7.809176e-01	k: 1256248	n:1610000
KS ci ratio: 2.426222e-01	ci left: 1.424573e-04	ci right 1.823586e-04	k: 260	n:1610000
TNXB   1610000 perm   1579 sec   (1020 perm/sec)   p_kst 1.614907e-04   p_cons 7.802783e-01   p_joint 3.428571e-04

Joint ci ratio: 1.659182e-01	ci left: 3.158670e-04	ci right 3.735982e-04	k: 557	n:1620000
Cons ci ratio: 1.634152e-03	ci left: 7.796777e-01	ci right 7.809534e-01	k: 1264112	n:1620000
KS ci ratio: 2.421587e-01	ci left: 1.421577e-04	ci right 1.818877e-04	k: 261	n:1620000
TNXB   1620000 perm   1594 sec   (1016 perm/sec)   p_kst 1.611111e-04   p_cons 7.803160e-01   p_joint 3.438272e-04

Joint ci ratio: 1.654740e-01	ci left: 3.156933e-04	ci right 3.732229e-04	k: 560	n:1630000
Cons ci ratio: 1.629013e-03	ci left: 7.797047e-01	ci right 7.809765e-01	k: 1271956	n:1630000
KS ci ratio: 2.407840e-01	ci left: 1.430147e-04	ci right 1.827234e-04	k: 264	n:1630000
TNXB   1630000 perm   1610 sec   (1012 perm/sec)   p_kst 1.619632e-04   p_cons 7.803411e-01   p_joint 3.435583e-04

Joint ci ratio: 1.648872e-01	ci left: 3.161066e-04	ci right 3.734869e-04	k: 564	n:1640000
Cons ci ratio: 1.623930e-03	ci left: 7.797296e-01	ci right 7.809975e-01	k: 1279797	n:1640000
KS ci ratio: 2.394325e-01	ci left: 1.438619e-04	ci right 1.835483e-04	k: 267	n:1640000
TNXB   1640000 perm   1626 sec   (1009 perm/sec)   p_kst 1.628049e-04   p_cons 7.803640e-01   p_joint 3.439024e-04

Joint ci ratio: 1.640185e-01	ci left: 3.176775e-04	ci right 3.750092e-04	k: 570	n:1650000
Cons ci ratio: 1.619187e-03	ci left: 7.796923e-01	ci right 7.809564e-01	k: 1287536	n:1650000
KS ci ratio: 2.372295e-01	ci left: 1.458394e-04	ci right 1.856468e-04	k: 272	n:1650000
TNXB   1650000 perm   1642 sec   (1005 perm/sec)   p_kst 1.648485e-04   p_cons 7.803248e-01   p_joint 3.454545e-04

Joint ci ratio: 1.665170e-01	ci left: 3.059462e-04	ci right 3.620862e-04	k: 553	n:1660000
Cons ci ratio: 1.614269e-03	ci left: 7.797013e-01	ci right 7.809616e-01	k: 1295351	n:1660000
KS ci ratio: 2.359366e-01	ci left: 1.466610e-04	ci right 1.864426e-04	k: 275	n:1660000
TNXB   1660000 perm   1658 sec   (1001 perm/sec)   p_kst 1.656627e-04   p_cons 7.803319e-01   p_joint 3.331325e-04

Joint ci ratio: 1.662173e-01	ci left: 3.052619e-04	ci right 3.611655e-04	k: 555	n:1670000
Cons ci ratio: 1.609376e-03	ci left: 7.797144e-01	ci right 7.809708e-01	k: 1303173	n:1670000
KS ci ratio: 2.355104e-01	ci left: 1.463462e-04	ci right 1.859603e-04	k: 276	n:1670000
TNXB   1670000 perm   1674 sec   (998 perm/sec)   p_kst 1.652695e-04   p_cons 7.803431e-01   p_joint 3.323353e-04

Joint ci ratio: 1.654748e-01	ci left: 3.062976e-04	ci right 3.621153e-04	k: 560	n:1680000
Cons ci ratio: 1.604630e-03	ci left: 7.797053e-01	ci right 7.809580e-01	k: 1310958	n:1680000
KS ci ratio: 2.355105e-01	ci left: 1.454751e-04	ci right 1.848534e-04	k: 276	n:1680000
TNXB   1680000 perm   1690 sec   (994 perm/sec)   p_kst 1.642857e-04   p_cons 7.803321e-01   p_joint 3.333333e-04

Joint ci ratio: 1.648880e-01	ci left: 3.067542e-04	ci right 3.624372e-04	k: 564	n:1690000
Cons ci ratio: 1.599990e-03	ci left: 7.796827e-01	ci right 7.809317e-01	k: 1318720	n:1690000
KS ci ratio: 2.342453e-01	ci left: 1.462850e-04	ci right 1.856390e-04	k: 279	n:1690000
TNXB   1690000 perm   1706 sec   (991 perm/sec)   p_kst 1.650888e-04   p_cons 7.803077e-01   p_joint 3.337278e-04

Joint ci ratio: 1.640193e-01	ci left: 3.083339e-04	ci right 3.639797e-04	k: 570	n:1700000
Cons ci ratio: 1.595192e-03	ci left: 7.797027e-01	ci right 7.809481e-01	k: 1326554	n:1700000
KS ci ratio: 2.338282e-01	ci left: 1.459782e-04	ci right 1.851697e-04	k: 280	n:1700000
TNXB   1700000 perm   1722 sec   (987 perm/sec)   p_kst 1.647059e-04   p_cons 7.803259e-01   p_joint 3.352941e-04

Joint ci ratio: 1.638760e-01	ci left: 3.070916e-04	ci right 3.624600e-04	k: 571	n:1710000
Cons ci ratio: 1.590671e-03	ci left: 7.796722e-01	ci right 7.809140e-01	k: 1334302	n:1710000
KS ci ratio: 2.334133e-01	ci left: 1.456751e-04	ci right 1.847058e-04	k: 281	n:1710000
TNXB   1710000 perm   1739 sec   (983 perm/sec)   p_kst 1.643275e-04   p_cons 7.802936e-01   p_joint 3.339181e-04

Joint ci ratio: 1.634479e-01	ci left: 3.069789e-04	ci right 3.621682e-04	k: 574	n:1720000
Cons ci ratio: 1.585917e-03	ci left: 7.797008e-01	ci right 7.809389e-01	k: 1342151	n:1720000
KS ci ratio: 2.330006e-01	ci left: 1.453756e-04	ci right 1.842472e-04	k: 282	n:1720000
TNXB   1720000 perm   1755 sec   (980 perm/sec)   p_kst 1.639535e-04   p_cons 7.803203e-01   p_joint 3.337209e-04

Joint ci ratio: 1.628823e-01	ci left: 3.074222e-04	ci right 3.624812e-04	k: 578	n:1730000
Cons ci ratio: 1.581338e-03	ci left: 7.797002e-01	ci right 7.809347e-01	k: 1349950	n:1730000
KS ci ratio: 2.317752e-01	ci left: 1.461684e-04	ci right 1.850171e-04	k: 285	n:1730000
TNXB   1730000 perm   1772 sec   (976 perm/sec)   p_kst 1.647399e-04   p_cons 7.803179e-01   p_joint 3.341040e-04

Joint ci ratio: 1.624620e-01	ci left: 3.073094e-04	ci right 3.621922e-04	k: 581	n:1740000
Cons ci ratio: 1.576690e-03	ci left: 7.797232e-01	ci right 7.809541e-01	k: 1357790	n:1740000
KS ci ratio: 2.313711e-01	ci left: 1.458697e-04	ci right 1.845617e-04	k: 286	n:1740000
TNXB   1740000 perm   1788 sec   (973 perm/sec)   p_kst 1.643678e-04   p_cons 7.803391e-01   p_joint 3.339080e-04

Joint ci ratio: 1.623227e-01	ci left: 3.061015e-04	ci right 3.607172e-04	k: 582	n:1750000
Cons ci ratio: 1.572363e-03	ci left: 7.796847e-01	ci right 7.809121e-01	k: 1365523	n:1750000
KS ci ratio: 2.313712e-01	ci left: 1.450362e-04	ci right 1.835071e-04	k: 286	n:1750000
TNXB   1750000 perm   1805 sec   (969 perm/sec)   p_kst 1.634286e-04   p_cons 7.802989e-01   p_joint 3.325714e-04

Joint ci ratio: 1.614937e-01	ci left: 3.076333e-04	ci right 3.622148e-04	k: 588	n:1760000
Cons ci ratio: 1.568069e-03	ci left: 7.796472e-01	ci right 7.808712e-01	k: 1373257	n:1760000
KS ci ratio: 2.309692e-01	ci left: 1.447474e-04	ci right 1.830655e-04	k: 287	n:1760000
TNXB   1760000 perm   1823 sec   (966 perm/sec)   p_kst 1.630682e-04   p_cons 7.802597e-01   p_joint 3.340909e-04

Joint ci ratio: 1.612203e-01	ci left: 3.069795e-04	ci right 3.613439e-04	k: 590	n:1770000
Cons ci ratio: 1.563603e-03	ci left: 7.796554e-01	ci right 7.808759e-01	k: 1381071	n:1770000
KS ci ratio: 2.309694e-01	ci left: 1.439296e-04	ci right 1.820312e-04	k: 287	n:1770000
TNXB   1770000 perm   1841 sec   (962 perm/sec)   p_kst 1.621469e-04   p_cons 7.802661e-01   p_joint 3.333333e-04

Joint ci ratio: 1.610842e-01	ci left: 3.057940e-04	ci right 3.598983e-04	k: 591	n:1780000
Cons ci ratio: 1.559174e-03	ci left: 7.796640e-01	ci right 7.808811e-01	k: 1388886	n:1780000
KS ci ratio: 2.309695e-01	ci left: 1.431210e-04	ci right 1.810086e-04	k: 287	n:1780000
TNXB   1780000 perm   1857 sec   (958 perm/sec)   p_kst 1.612360e-04   p_cons 7.802730e-01   p_joint 3.320225e-04

Joint ci ratio: 1.272819e-01	ci left: 4.958952e-04	ci right 5.638382e-04	k: 947	n:1790000
Cons ci ratio: 1.554855e-03	ci left: 7.796564e-01	ci right 7.808701e-01	k: 1396672	n:1790000
KS ci ratio: 2.301716e-01	ci left: 1.433742e-04	ci right 1.811791e-04	k: 289	n:1790000
TNXB   1790000 perm   1874 sec   (955 perm/sec)   p_kst 1.614525e-04   p_cons 7.802637e-01   p_joint 5.290503e-04

Joint ci ratio: 1.271480e-01	ci left: 4.942160e-04	ci right 5.618523e-04	k: 949	n:1800000
Cons ci ratio: 1.550566e-03	ci left: 7.796499e-01	ci right 7.808603e-01	k: 1404460	n:1800000
KS ci ratio: 2.301717e-01	ci left: 1.425777e-04	ci right 1.801726e-04	k: 289	n:1800000
TNXB   1800000 perm   1891 sec   (952 perm/sec)   p_kst 1.605556e-04   p_cons 7.802556e-01   p_joint 5.272222e-04

Joint ci ratio: 1.279593e-01	ci left: 4.850671e-04	ci right 5.519071e-04	k: 937	n:1810000
Cons ci ratio: 1.546251e-03	ci left: 7.796574e-01	ci right 7.808644e-01	k: 1412273	n:1810000
KS ci ratio: 2.297759e-01	ci left: 1.423106e-04	ci right 1.797614e-04	k: 290	n:1810000
TNXB   1810000 perm   1908 sec   (949 perm/sec)   p_kst 1.602210e-04   p_cons 7.802613e-01   p_joint 5.176796e-04

Joint ci ratio: 1.268814e-01	ci left: 4.909129e-04	ci right 5.579458e-04	k: 953	n:1820000
Cons ci ratio: 1.541937e-03	ci left: 7.796724e-01	ci right 7.808761e-01	k: 1420100	n:1820000
KS ci ratio: 2.266808e-01	ci left: 1.456731e-04	ci right 1.834201e-04	k: 298	n:1820000
TNXB   1820000 perm   1925 sec   (945 perm/sec)   p_kst 1.637363e-04   p_cons 7.802747e-01   p_joint 5.236264e-04

Joint ci ratio: 1.264842e-01	ci left: 4.914052e-04	ci right 5.582794e-04	k: 959	n:1830000
Cons ci ratio: 1.537813e-03	ci left: 7.796529e-01	ci right 7.808533e-01	k: 1427864	n:1830000
KS ci ratio: 2.255520e-01	ci left: 1.464235e-04	ci right 1.841499e-04	k: 301	n:1830000
TNXB   1830000 perm   1943 sec   (942 perm/sec)   p_kst 1.644809e-04   p_cons 7.802536e-01   p_joint 5.240437e-04

Joint ci ratio: 1.263528e-01	ci left: 4.897870e-04	ci right 5.563666e-04	k: 961	n:1840000
Cons ci ratio: 1.533538e-03	ci left: 7.796749e-01	ci right 7.808720e-01	k: 1435704	n:1840000
KS ci ratio: 2.251795e-01	ci left: 1.461406e-04	ci right 1.837232e-04	k: 302	n:1840000
TNXB   1840000 perm   1960 sec   (939 perm/sec)   p_kst 1.641304e-04   p_cons 7.802739e-01   p_joint 5.222826e-04

Joint ci ratio: 1.274176e-01	ci left: 4.787652e-04	ci right 5.444364e-04	k: 945	n:1850000
Cons ci ratio: 1.529261e-03	ci left: 7.797048e-01	ci right 7.808986e-01	k: 1443559	n:1850000
KS ci ratio: 2.237076e-01	ci left: 1.473912e-04	ci right 1.850136e-04	k: 306	n:1850000
TNXB   1850000 perm   1977 sec   (936 perm/sec)   p_kst 1.654054e-04   p_cons 7.803022e-01   p_joint 5.108108e-04

Joint ci ratio: 1.040596e-01	ci left: 7.226874e-04	ci right 8.025361e-04	k: 1417	n:1860000
Cons ci ratio: 1.525315e-03	ci left: 7.796682e-01	ci right 7.808589e-01	k: 1451291	n:1860000
KS ci ratio: 2.222642e-01	ci left: 1.486292e-04	ci right 1.862893e-04	k: 310	n:1860000
TNXB   1860000 perm   1995 sec   (932 perm/sec)   p_kst 1.666667e-04   p_cons 7.802640e-01   p_joint 7.618280e-04

Joint ci ratio: 1.038402e-01	ci left: 7.219479e-04	ci right 8.015365e-04	k: 1423	n:1870000
Cons ci ratio: 1.521197e-03	ci left: 7.796775e-01	ci right 7.808650e-01	k: 1459108	n:1870000
KS ci ratio: 2.222643e-01	ci left: 1.478344e-04	ci right 1.852931e-04	k: 310	n:1870000
TNXB   1870000 perm   2012 sec   (929 perm/sec)   p_kst 1.657754e-04   p_cons 7.802717e-01   p_joint 7.609626e-04

Joint ci ratio: 1.034053e-01	ci left: 7.243254e-04	ci right 8.038213e-04	k: 1435	n:1880000
Cons ci ratio: 1.517136e-03	ci left: 7.796814e-01	ci right 7.808656e-01	k: 1466915	n:1880000
KS ci ratio: 2.215530e-01	ci left: 1.480528e-04	ci right 1.854304e-04	k: 312	n:1880000
TNXB   1880000 perm   2030 sec   (926 perm/sec)   p_kst 1.659574e-04   p_cons 7.802739e-01   p_joint 7.632979e-04

Joint ci ratio: 1.031900e-01	ci left: 7.235855e-04	ci right 8.028248e-04	k: 1441	n:1890000
Cons ci ratio: 1.512950e-03	ci left: 7.797207e-01	ci right 7.809018e-01	k: 1474789	n:1890000
KS ci ratio: 2.212000e-01	ci left: 1.477692e-04	ci right 1.850077e-04	k: 313	n:1890000
TNXB   1890000 perm   2048 sec   (923 perm/sec)   p_kst 1.656085e-04   p_cons 7.803116e-01   p_joint 7.624339e-04

Joint ci ratio: 1.029760e-01	ci left: 7.228536e-04	ci right 8.018387e-04	k: 1447	n:1900000
Cons ci ratio: 1.509119e-03	ci left: 7.796869e-01	ci right 7.808649e-01	k: 1482525	n:1900000
KS ci ratio: 2.204988e-01	ci left: 1.479859e-04	ci right 1.851447e-04	k: 315	n:1900000
TNXB   1900000 perm   2066 sec   (920 perm/sec)   p_kst 1.657895e-04   p_cons 7.802763e-01   p_joint 7.615789e-04

Joint ci ratio: 1.029407e-01	ci left: 7.195791e-04	ci right 7.981777e-04	k: 1448	n:1910000
Cons ci ratio: 1.505138e-03	ci left: 7.796943e-01	ci right 7.808692e-01	k: 1490339	n:1910000
KS ci ratio: 2.198043e-01	ci left: 1.482005e-04	ci right 1.852801e-04	k: 317	n:1910000
TNXB   1910000 perm   2084 sec   (917 perm/sec)   p_kst 1.659686e-04   p_cons 7.802822e-01   p_joint 7.581152e-04

Joint ci ratio: 1.025520e-01	ci left: 7.214133e-04	ci right 7.998969e-04	k: 1459	n:1920000
Cons ci ratio: 1.501336e-03	ci left: 7.796678e-01	ci right 7.808397e-01	k: 1498088	n:1920000
KS ci ratio: 2.187747e-01	ci left: 1.489053e-04	ci right 1.859633e-04	k: 320	n:1920000
TNXB   1920000 perm   2102 sec   (914 perm/sec)   p_kst 1.666667e-04   p_cons 7.802542e-01   p_joint 7.598958e-04

Joint ci ratio: 1.024120e-01	ci left: 7.196947e-04	ci right 7.978780e-04	k: 1463	n:1930000
Cons ci ratio: 1.497460e-03	ci left: 7.796649e-01	ci right 7.808338e-01	k: 1505882	n:1930000
KS ci ratio: 2.184348e-01	ci left: 1.486235e-04	ci right 1.855462e-04	k: 321	n:1930000
TNXB   1930000 perm   2120 sec   (911 perm/sec)   p_kst 1.663212e-04   p_cons 7.802497e-01   p_joint 7.580311e-04

Joint ci ratio: 1.026228e-01	ci left: 7.129714e-04	ci right 7.905933e-04	k: 1457	n:1940000
Cons ci ratio: 1.493476e-03	ci left: 7.796940e-01	ci right 7.808598e-01	k: 1513738	n:1940000
KS ci ratio: 2.167582e-01	ci left: 1.502943e-04	ci right 1.873073e-04	k: 326	n:1940000
TNXB   1940000 perm   2138 sec   (907 perm/sec)   p_kst 1.680412e-04   p_cons 7.802773e-01   p_joint 7.510309e-04

Joint ci ratio: 9.637522e-02	ci left: 8.068309e-04	ci right 8.890221e-04	k: 1652	n:1950000
Cons ci ratio: 1.489501e-03	ci left: 7.797279e-01	ci right 7.808907e-01	k: 1521604	n:1950000
KS ci ratio: 2.164275e-01	ci left: 1.500085e-04	ci right 1.868874e-04	k: 327	n:1950000
TNXB   1950000 perm   2157 sec   (904 perm/sec)   p_kst 1.676923e-04   p_cons 7.803097e-01   p_joint 8.471795e-04

Joint ci ratio: 9.614286e-02	ci left: 8.066978e-04	ci right 8.886661e-04	k: 1660	n:1960000
Cons ci ratio: 1.485497e-03	ci left: 7.797753e-01	ci right 7.809351e-01	k: 1529497	n:1960000
KS ci ratio: 2.160984e-01	ci left: 1.497258e-04	ci right 1.864717e-04	k: 328	n:1960000
TNXB   1960000 perm   2176 sec   (901 perm/sec)   p_kst 1.673469e-04   p_cons 7.803556e-01   p_joint 8.469388e-04

Joint ci ratio: 9.591218e-02	ci left: 8.065663e-04	ci right 8.883135e-04	k: 1668	n:1970000
Cons ci ratio: 1.481745e-03	ci left: 7.797715e-01	ci right 7.809282e-01	k: 1537290	n:1970000
KS ci ratio: 2.154445e-01	ci left: 1.499261e-04	ci right 1.865951e-04	k: 330	n:1970000
TNXB   1970000 perm   2194 sec   (898 perm/sec)   p_kst 1.675127e-04   p_cons 7.803503e-01   p_joint 8.467005e-04

Joint ci ratio: 9.568314e-02	ci left: 8.064363e-04	ci right 8.879643e-04	k: 1676	n:1980000
Cons ci ratio: 1.478083e-03	ci left: 7.797535e-01	ci right 7.809073e-01	k: 1545055	n:1980000
KS ci ratio: 2.147966e-01	ci left: 1.501246e-04	ci right 1.867172e-04	k: 332	n:1980000
TNXB   1980000 perm   2213 sec   (895 perm/sec)   p_kst 1.676768e-04   p_cons 7.803308e-01   p_joint 8.464646e-04

Joint ci ratio: 9.539909e-02	ci left: 8.072890e-04	ci right 8.886473e-04	k: 1686	n:1990000
Cons ci ratio: 1.474259e-03	ci left: 7.797794e-01	ci right 7.809303e-01	k: 1552907	n:1990000
KS ci ratio: 2.141544e-01	ci left: 1.503212e-04	ci right 1.868378e-04	k: 334	n:1990000
TNXB   1990000 perm   2232 sec   (892 perm/sec)   p_kst 1.678392e-04   p_cons 7.803553e-01   p_joint 8.472362e-04

Joint ci ratio: 9.511756e-02	ci left: 8.081334e-04	ci right 8.893231e-04	k: 1696	n:2000000
Cons ci ratio: 1.470638e-03	ci left: 7.797646e-01	ci right 7.809126e-01	k: 1560678	n:2000000
KS ci ratio: 2.141545e-01	ci left: 1.495696e-04	ci right 1.859036e-04	k: 334	n:2000000
TNXB   2000000 perm   2250 sec   (889 perm/sec)   p_kst 1.670000e-04   p_cons 7.803390e-01   p_joint 8.480000e-04

Joint ci ratio: 9.508973e-02	ci left: 8.045985e-04	ci right 8.854080e-04	k: 1697	n:2010000
Cons ci ratio: 1.467091e-03	ci left: 7.797389e-01	ci right 7.808842e-01	k: 1568427	n:2010000
KS ci ratio: 2.141546e-01	ci left: 1.488255e-04	ci right 1.849788e-04	k: 334	n:2010000
TNXB   2010000 perm   2269 sec   (886 perm/sec)   p_kst 1.661692e-04   p_cons 7.803119e-01   p_joint 8.442786e-04

Joint ci ratio: 9.514602e-02	ci left: 7.996487e-04	ci right 8.800113e-04	k: 1695	n:2020000
Cons ci ratio: 1.463356e-03	ci left: 7.797636e-01	ci right 7.809059e-01	k: 1576277	n:2020000
KS ci ratio: 2.135181e-01	ci left: 1.490258e-04	ci right 1.851061e-04	k: 336	n:2020000
TNXB   2020000 perm   2288 sec   (883 perm/sec)   p_kst 1.663366e-04   p_cons 7.803351e-01   p_joint 8.391089e-04

Joint ci ratio: 9.489456e-02	ci left: 8.000377e-04	ci right 8.802151e-04	k: 1704	n:2030000
Cons ci ratio: 1.459803e-03	ci left: 7.797520e-01	ci right 7.808916e-01	k: 1584054	n:2030000
KS ci ratio: 2.128873e-01	ci left: 1.492243e-04	ci right 1.852320e-04	k: 338	n:2030000
TNXB   2030000 perm   2308 sec   (880 perm/sec)   p_kst 1.665025e-04   p_cons 7.803222e-01   p_joint 8.394089e-04

Joint ci ratio: 9.478354e-02	ci left: 7.980302e-04	ci right 8.779076e-04	k: 1708	n:2040000
Cons ci ratio: 1.456261e-03	ci left: 7.797439e-01	ci right 7.808808e-01	k: 1591838	n:2040000
KS ci ratio: 2.128874e-01	ci left: 1.484928e-04	ci right 1.843240e-04	k: 338	n:2040000
TNXB   2040000 perm   2327 sec   (877 perm/sec)   p_kst 1.656863e-04   p_cons 7.803127e-01   p_joint 8.372549e-04

Joint ci ratio: 9.472828e-02	ci left: 7.950898e-04	ci right 8.746239e-04	k: 1710	n:2050000
Cons ci ratio: 1.452767e-03	ci left: 7.797306e-01	ci right 7.808647e-01	k: 1599611	n:2050000
KS ci ratio: 2.119516e-01	ci left: 1.491540e-04	ci right 1.849660e-04	k: 341	n:2050000
TNXB   2050000 perm   2346 sec   (874 perm/sec)   p_kst 1.663415e-04   p_cons 7.802980e-01   p_joint 8.341463e-04

Joint ci ratio: 9.448010e-02	ci left: 7.954957e-04	ci right 8.748504e-04	k: 1719	n:2060000
Cons ci ratio: 1.449197e-03	ci left: 7.797412e-01	ci right 7.808725e-01	k: 1607433	n:2060000
KS ci ratio: 2.116424e-01	ci left: 1.488897e-04	ci right 1.845792e-04	k: 342	n:2060000
TNXB   2060000 perm   2365 sec   (871 perm/sec)   p_kst 1.660194e-04   p_cons 7.803073e-01   p_joint 8.344660e-04

Joint ci ratio: 9.415215e-02	ci left: 7.973131e-04	ci right 8.765579e-04	k: 1731	n:2070000
Cons ci ratio: 1.445805e-03	ci left: 7.797160e-01	ci right 7.808446e-01	k: 1615181	n:2070000
KS ci ratio: 2.107228e-01	ci left: 1.495430e-04	ci right 1.852133e-04	k: 345	n:2070000
TNXB   2070000 perm   2384 sec   (868 perm/sec)   p_kst 1.666667e-04   p_cons 7.802807e-01   p_joint 8.362319e-04

Joint ci ratio: 9.450798e-02	ci left: 7.873771e-04	ci right 8.659465e-04	k: 1718	n:2080000
Cons ci ratio: 1.442215e-03	ci left: 7.797434e-01	ci right 7.808693e-01	k: 1623038	n:2080000
KS ci ratio: 2.104190e-01	ci left: 1.492795e-04	ci right 1.848290e-04	k: 346	n:2080000
TNXB   2080000 perm   2404 sec   (865 perm/sec)   p_kst 1.663462e-04   p_cons 7.803067e-01   p_joint 8.259615e-04

Joint ci ratio: 9.445319e-02	ci left: 7.845440e-04	ci right 8.627828e-04	k: 1720	n:2090000
Cons ci ratio: 1.438747e-03	ci left: 7.797481e-01	ci right 7.808712e-01	k: 1630848	n:2090000
KS ci ratio: 2.104191e-01	ci left: 1.485652e-04	ci right 1.839446e-04	k: 346	n:2090000
TNXB   2090000 perm   2424 sec   (862 perm/sec)   p_kst 1.655502e-04   p_cons 7.803100e-01   p_joint 8.229665e-04

Joint ci ratio: 9.448085e-02	ci left: 7.803431e-04	ci right 8.581870e-04	k: 1719	n:2100000
Cons ci ratio: 1.435226e-03	ci left: 7.797713e-01	ci right 7.808917e-01	k: 1638697	n:2100000
KS ci ratio: 2.092166e-01	ci left: 1.496625e-04	ci right 1.850734e-04	k: 350	n:2100000
TNXB   2100000 perm   2443 sec   (860 perm/sec)   p_kst 1.666667e-04   p_cons 7.803319e-01   p_joint 8.185714e-04

Joint ci ratio: 9.848782e-02	ci left: 7.132807e-04	ci right 7.876267e-04	k: 1582	n:2110000
Cons ci ratio: 1.431863e-03	ci left: 7.797625e-01	ci right 7.808803e-01	k: 1646479	n:2110000
KS ci ratio: 2.083281e-01	ci left: 1.503006e-04	ci right 1.856923e-04	k: 353	n:2110000
TNXB   2110000 perm   2462 sec   (857 perm/sec)   p_kst 1.672986e-04   p_cons 7.803218e-01   p_joint 7.497630e-04

Joint ci ratio: 9.820900e-02	ci left: 7.140570e-04	ci right 7.882611e-04	k: 1591	n:2120000
Cons ci ratio: 1.428687e-03	ci left: 7.797147e-01	ci right 7.808299e-01	k: 1654178	n:2120000
KS ci ratio: 2.074509e-01	ci left: 1.509331e-04	ci right 1.863050e-04	k: 356	n:2120000
TNXB   2120000 perm   2482 sec   (854 perm/sec)   p_kst 1.679245e-04   p_cons 7.802726e-01   p_joint 7.504717e-04

Joint ci ratio: 9.799381e-02	ci left: 7.139104e-04	ci right 7.879273e-04	k: 1598	n:2130000
Cons ci ratio: 1.425268e-03	ci left: 7.797307e-01	ci right 7.808432e-01	k: 1662012	n:2130000
KS ci ratio: 2.071610e-01	ci left: 1.506696e-04	ci right 1.859242e-04	k: 357	n:2130000
TNXB   2130000 perm   2503 sec   (851 perm/sec)   p_kst 1.676056e-04   p_cons 7.802873e-01   p_joint 7.502347e-04

Joint ci ratio: 9.787155e-02	ci left: 7.123977e-04	ci right 7.861604e-04	k: 1602	n:2140000
Cons ci ratio: 1.422021e-03	ci left: 7.797110e-01	ci right 7.808210e-01	k: 1669770	n:2140000
KS ci ratio: 2.065847e-01	ci left: 1.508517e-04	ci right 1.860383e-04	k: 359	n:2140000
TNXB   2140000 perm   2522 sec   (848 perm/sec)   p_kst 1.677570e-04   p_cons 7.802664e-01   p_joint 7.485981e-04

Joint ci ratio: 9.851966e-02	ci left: 6.995564e-04	ci right 7.724969e-04	k: 1581	n:2150000
Cons ci ratio: 1.418748e-03	ci left: 7.797031e-01	ci right 7.808105e-01	k: 1677553	n:2150000
KS ci ratio: 2.065848e-01	ci left: 1.501501e-04	ci right 1.851730e-04	k: 359	n:2150000
TNXB   2150000 perm   2543 sec   (846 perm/sec)   p_kst 1.669767e-04   p_cons 7.802572e-01   p_joint 7.353488e-04

Joint ci ratio: 9.842648e-02	ci left: 6.976724e-04	ci right 7.703436e-04	k: 1584	n:2160000
Cons ci ratio: 1.415423e-03	ci left: 7.797134e-01	ci right 7.808183e-01	k: 1685375	n:2160000
KS ci ratio: 2.060133e-01	ci left: 1.503330e-04	ci right 1.852894e-04	k: 361	n:2160000
TNXB   2160000 perm   2562 sec   (843 perm/sec)   p_kst 1.671296e-04   p_cons 7.802662e-01   p_joint 7.333333e-04

Joint ci ratio: 9.814818e-02	ci left: 6.985029e-04	ci right 7.710430e-04	k: 1593	n:2170000
Cons ci ratio: 1.412153e-03	ci left: 7.797158e-01	ci right 7.808181e-01	k: 1693180	n:2170000
KS ci ratio: 2.057294e-01	ci left: 1.500773e-04	ci right 1.849201e-04	k: 362	n:2170000
TNXB   2170000 perm   2582 sec   (840 perm/sec)   p_kst 1.668203e-04   p_cons 7.802673e-01   p_joint 7.341014e-04

Joint ci ratio: 9.787223e-02	ci left: 6.993260e-04	ci right 7.717357e-04	k: 1602	n:2180000
Cons ci ratio: 1.408912e-03	ci left: 7.797167e-01	ci right 7.808165e-01	k: 1700982	n:2180000
KS ci ratio: 2.054466e-01	ci left: 1.498240e-04	ci right 1.845542e-04	k: 363	n:2180000
TNXB   2180000 perm   2603 sec   (837 perm/sec)   p_kst 1.665138e-04   p_cons 7.802670e-01   p_joint 7.348624e-04

Joint ci ratio: 9.784186e-02	ci left: 6.965781e-04	ci right 7.686796e-04	k: 1603	n:2190000
Cons ci ratio: 1.405725e-03	ci left: 7.797099e-01	ci right 7.808072e-01	k: 1708767	n:2190000
KS ci ratio: 2.051650e-01	ci left: 1.495730e-04	ci right 1.841915e-04	k: 364	n:2190000
TNXB   2190000 perm   2623 sec   (835 perm/sec)   p_kst 1.662100e-04   p_cons 7.802589e-01   p_joint 7.319635e-04

Joint ci ratio: 9.753822e-02	ci left: 6.978463e-04	ci right 7.698421e-04	k: 1613	n:2200000
Cons ci ratio: 1.402671e-03	ci left: 7.796759e-01	ci right 7.807707e-01	k: 1716492	n:2200000
KS ci ratio: 2.046052e-01	ci left: 1.497556e-04	ci right 1.843099e-04	k: 366	n:2200000
TNXB   2200000 perm   2644 sec   (832 perm/sec)   p_kst 1.663636e-04   p_cons 7.802236e-01   p_joint 7.331818e-04

Joint ci ratio: 9.729737e-02	ci left: 6.982203e-04	ci right 7.700667e-04	k: 1621	n:2210000
Cons ci ratio: 1.399457e-03	ci left: 7.796860e-01	ci right 7.807784e-01	k: 1724314	n:2210000
KS ci ratio: 2.043271e-01	ci left: 1.495073e-04	ci right 1.839516e-04	k: 367	n:2210000
TNXB   2210000 perm   2664 sec   (830 perm/sec)   p_kst 1.660633e-04   p_cons 7.802326e-01   p_joint 7.334842e-04

Joint ci ratio: 9.714780e-02	ci left: 6.972726e-04	ci right 7.689049e-04	k: 1626	n:2220000
Cons ci ratio: 1.396344e-03	ci left: 7.796768e-01	ci right 7.807667e-01	k: 1732093	n:2220000
KS ci ratio: 2.040500e-01	ci left: 1.492612e-04	ci right 1.835964e-04	k: 368	n:2220000
TNXB   2220000 perm   2684 sec   (827 perm/sec)   p_kst 1.657658e-04   p_cons 7.802221e-01   p_joint 7.324324e-04

Joint ci ratio: 9.732772e-02	ci left: 6.915206e-04	ci right 7.627011e-04	k: 1620	n:2230000
Cons ci ratio: 1.393232e-03	ci left: 7.796725e-01	ci right 7.807600e-01	k: 1739883	n:2230000
KS ci ratio: 2.040501e-01	ci left: 1.485919e-04	ci right 1.827731e-04	k: 368	n:2230000
TNXB   2230000 perm   2704 sec   (825 perm/sec)   p_kst 1.650224e-04   p_cons 7.802166e-01   p_joint 7.264574e-04

Joint ci ratio: 9.711826e-02	ci left: 6.914825e-04	ci right 7.624971e-04	k: 1627	n:2240000
Cons ci ratio: 1.390222e-03	ci left: 7.796482e-01	ci right 7.807332e-01	k: 1747628	n:2240000
KS ci ratio: 2.037742e-01	ci left: 1.483522e-04	ci right 1.824264e-04	k: 369	n:2240000
TNXB   2240000 perm   2725 sec   (822 perm/sec)   p_kst 1.647321e-04   p_cons 7.801911e-01   p_joint 7.263393e-04

Joint ci ratio: 9.679173e-02	ci left: 6.931796e-04	ci right 7.641156e-04	k: 1638	n:2250000
Cons ci ratio: 1.387095e-03	ci left: 7.796579e-01	ci right 7.807405e-01	k: 1755449	n:2250000
KS ci ratio: 2.034994e-01	ci left: 1.481146e-04	ci right 1.820827e-04	k: 370	n:2250000
TNXB   2250000 perm   2745 sec   (820 perm/sec)   p_kst 1.644444e-04   p_cons 7.801996e-01   p_joint 7.280000e-04

Joint ci ratio: 9.655636e-02	ci left: 6.935667e-04	ci right 7.643599e-04	k: 1646	n:2260000
Cons ci ratio: 1.383953e-03	ci left: 7.796764e-01	ci right 7.807566e-01	k: 1763290	n:2260000
KS ci ratio: 2.034995e-01	ci left: 1.474592e-04	ci right 1.812770e-04	k: 370	n:2260000
TNXB   2260000 perm   2766 sec   (817 perm/sec)   p_kst 1.637168e-04   p_cons 7.802168e-01   p_joint 7.283186e-04

Joint ci ratio: 9.638099e-02	ci left: 6.930907e-04	ci right 7.636996e-04	k: 1652	n:2270000
Cons ci ratio: 1.380792e-03	ci left: 7.797048e-01	ci right 7.807826e-01	k: 1771154	n:2270000
KS ci ratio: 2.034996e-01	ci left: 1.468096e-04	ci right 1.804784e-04	k: 370	n:2270000
TNXB   2270000 perm   2787 sec   (815 perm/sec)   p_kst 1.629956e-04   p_cons 7.802441e-01   p_joint 7.277533e-04

Joint ci ratio: 9.632284e-02	ci left: 6.909069e-04	ci right 7.612484e-04	k: 1654	n:2280000
Cons ci ratio: 1.377654e-03	ci left: 7.797326e-01	ci right 7.808079e-01	k: 1779017	n:2280000
KS ci ratio: 2.032259e-01	ci left: 1.465820e-04	ci right 1.801478e-04	k: 371	n:2280000
TNXB   2280000 perm   2808 sec   (812 perm/sec)   p_kst 1.627193e-04   p_cons 7.802706e-01   p_joint 7.254386e-04

Joint ci ratio: 9.614874e-02	ci left: 6.904468e-04	ci right 7.606073e-04	k: 1660	n:2290000
Cons ci ratio: 1.374584e-03	ci left: 7.797483e-01	ci right 7.808213e-01	k: 1786853	n:2290000
KS ci ratio: 2.032260e-01	ci left: 1.459419e-04	ci right 1.793611e-04	k: 371	n:2290000
TNXB   2290000 perm   2829 sec   (809 perm/sec)   p_kst 1.620087e-04   p_cons 7.802852e-01   p_joint 7.248908e-04

Joint ci ratio: 9.600440e-02	ci left: 6.895665e-04	ci right 7.595265e-04	k: 1665	n:2300000
Cons ci ratio: 1.371528e-03	ci left: 7.797656e-01	ci right 7.808363e-01	k: 1794693	n:2300000
KS ci ratio: 2.029534e-01	ci left: 1.457200e-04	ci right 1.790381e-04	k: 372	n:2300000
TNXB   2300000 perm   2850 sec   (807 perm/sec)   p_kst 1.617391e-04   p_cons 7.803013e-01   p_joint 7.239130e-04

Joint ci ratio: 9.574609e-02	ci left: 6.903841e-04	ci right 7.602280e-04	k: 1674	n:2310000
Cons ci ratio: 1.368525e-03	ci left: 7.797746e-01	ci right 7.808429e-01	k: 1802514	n:2310000
KS ci ratio: 2.024115e-01	ci left: 1.459111e-04	ci right 1.791728e-04	k: 374	n:2310000
TNXB   2310000 perm   2872 sec   (804 perm/sec)   p_kst 1.619048e-04   p_cons 7.803091e-01   p_joint 7.246753e-04

Joint ci ratio: 9.557509e-02	ci left: 6.899326e-04	ci right 7.595992e-04	k: 1680	n:2320000
Cons ci ratio: 1.365616e-03	ci left: 7.797649e-01	ci right 7.808309e-01	k: 1810292	n:2320000
KS ci ratio: 2.018738e-01	ci left: 1.461006e-04	ci right 1.793061e-04	k: 376	n:2320000
TNXB   2320000 perm   2893 sec   (802 perm/sec)   p_kst 1.620690e-04   p_cons 7.802983e-01   p_joint 7.241379e-04

Joint ci ratio: 9.537672e-02	ci left: 6.899041e-04	ci right 7.594151e-04	k: 1687	n:2330000
Cons ci ratio: 1.362563e-03	ci left: 7.797962e-01	ci right 7.808598e-01	k: 1818165	n:2330000
KS ci ratio: 2.018739e-01	ci left: 1.454735e-04	ci right 1.785366e-04	k: 376	n:2330000
TNXB   2330000 perm   2914 sec   (800 perm/sec)   p_kst 1.613734e-04   p_cons 7.803283e-01   p_joint 7.240343e-04

Joint ci ratio: 9.523582e-02	ci left: 6.890416e-04	ci right 7.583575e-04	k: 1692	n:2340000
Cons ci ratio: 1.359730e-03	ci left: 7.797766e-01	ci right 7.808381e-01	k: 1825920	n:2340000
KS ci ratio: 2.016067e-01	ci left: 1.452576e-04	ci right 1.782225e-04	k: 377	n:2340000
TNXB   2340000 perm   2935 sec   (797 perm/sec)   p_kst 1.611111e-04   p_cons 7.803077e-01   p_joint 7.230769e-04

Joint ci ratio: 9.537701e-02	ci left: 6.840325e-04	ci right 7.529521e-04	k: 1687	n:2350000
Cons ci ratio: 1.356819e-03	ci left: 7.797816e-01	ci right 7.808407e-01	k: 1833732	n:2350000
KS ci ratio: 2.016068e-01	ci left: 1.446395e-04	ci right 1.774641e-04	k: 377	n:2350000
TNXB   2350000 perm   2956 sec   (795 perm/sec)   p_kst 1.604255e-04   p_cons 7.803115e-01   p_joint 7.178723e-04

Joint ci ratio: 9.537716e-02	ci left: 6.811340e-04	ci right 7.497617e-04	k: 1687	n:2360000
Cons ci ratio: 1.353963e-03	ci left: 7.797771e-01	ci right 7.808340e-01	k: 1841522	n:2360000
KS ci ratio: 2.008114e-01	ci left: 1.452338e-04	ci right 1.780473e-04	k: 380	n:2360000
TNXB   2360000 perm   2977 sec   (793 perm/sec)   p_kst 1.610169e-04   p_cons 7.803059e-01   p_joint 7.148305e-04

Joint ci ratio: 9.512387e-02	ci left: 6.819670e-04	ci right 7.504861e-04	k: 1696	n:2370000
Cons ci ratio: 1.351115e-03	ci left: 7.797753e-01	ci right 7.808300e-01	k: 1849318	n:2370000
KS ci ratio: 2.005484e-01	ci left: 1.450217e-04	ci right 1.777391e-04	k: 381	n:2370000
TNXB   2370000 perm   2998 sec   (791 perm/sec)   p_kst 1.607595e-04   p_cons 7.803030e-01   p_joint 7.156118e-04

Joint ci ratio: 9.503998e-02	ci left: 6.803321e-04	ci right 7.486233e-04	k: 1699	n:2380000
Cons ci ratio: 1.348388e-03	ci left: 7.797474e-01	ci right 7.807999e-01	k: 1857052	n:2380000
KS ci ratio: 2.002865e-01	ci left: 1.448115e-04	ci right 1.774336e-04	k: 382	n:2380000
TNXB   2380000 perm   3019 sec   (788 perm/sec)   p_kst 1.605042e-04   p_cons 7.802739e-01   p_joint 7.138655e-04

Joint ci ratio: 9.476163e-02	ci left: 6.815704e-04	ci right 7.497743e-04	k: 1709	n:2390000
Cons ci ratio: 1.345672e-03	ci left: 7.797209e-01	ci right 7.807713e-01	k: 1864789	n:2390000
KS ci ratio: 2.000255e-01	ci left: 1.446030e-04	ci right 1.771305e-04	k: 383	n:2390000
TNXB   2390000 perm   3040 sec   (786 perm/sec)   p_kst 1.602510e-04   p_cons 7.802464e-01   p_joint 7.150628e-04

Joint ci ratio: 9.476177e-02	ci left: 6.787305e-04	ci right 7.466503e-04	k: 1709	n:2400000
Cons ci ratio: 1.342946e-03	ci left: 7.797014e-01	ci right 7.807496e-01	k: 1872542	n:2400000
KS ci ratio: 2.000256e-01	ci left: 1.440005e-04	ci right 1.763925e-04	k: 383	n:2400000
TNXB   2400000 perm   3062 sec   (784 perm/sec)   p_kst 1.595833e-04   p_cons 7.802258e-01   p_joint 7.120833e-04

Joint ci ratio: 9.459598e-02	ci left: 6.783448e-04	ci right 7.461007e-04	k: 1715	n:2410000
Cons ci ratio: 1.340162e-03	ci left: 7.797011e-01	ci right 7.807472e-01	k: 1880341	n:2410000
KS ci ratio: 1.995067e-01	ci left: 1.441913e-04	ci right 1.765319e-04	k: 385	n:2410000
TNXB   2410000 perm   3083 sec   (782 perm/sec)   p_kst 1.597510e-04   p_cons 7.802245e-01   p_joint 7.116183e-04

Joint ci ratio: 9.432149e-02	ci left: 6.795764e-04	ci right 7.472475e-04	k: 1725	n:2420000
Cons ci ratio: 1.337306e-03	ci left: 7.797240e-01	ci right 7.807679e-01	k: 1888196	n:2420000
KS ci ratio: 1.992488e-01	ci left: 1.439881e-04	ci right 1.762362e-04	k: 386	n:2420000
TNXB   2420000 perm   3105 sec   (779 perm/sec)   p_kst 1.595041e-04   p_cons 7.802463e-01   p_joint 7.128099e-04

Joint ci ratio: 8.975407e-02	ci left: 7.491511e-04	ci right 8.199485e-04	k: 1905	n:2430000
Cons ci ratio: 1.334496e-03	ci left: 7.797393e-01	ci right 7.807810e-01	k: 1896033	n:2430000
KS ci ratio: 1.987359e-01	ci left: 1.441776e-04	ci right 1.763750e-04	k: 388	n:2430000
TNXB   2430000 perm   3126 sec   (777 perm/sec)   p_kst 1.596708e-04   p_cons 7.802605e-01   p_joint 7.839506e-04

Joint ci ratio: 8.947278e-02	ci left: 7.508887e-04	ci right 8.216163e-04	k: 1917	n:2440000
Cons ci ratio: 1.331731e-03	ci left: 7.797475e-01	ci right 7.807870e-01	k: 1903853	n:2440000
KS ci ratio: 1.982270e-01	ci left: 1.443656e-04	ci right 1.765125e-04	k: 390	n:2440000
TNXB   2440000 perm   3148 sec   (775 perm/sec)   p_kst 1.598361e-04   p_cons 7.802676e-01   p_joint 7.856557e-04

Joint ci ratio: 8.924040e-02	ci left: 7.518143e-04	ci right 8.224355e-04	k: 1927	n:2450000
Cons ci ratio: 1.329000e-03	ci left: 7.797512e-01	ci right 7.807886e-01	k: 1911662	n:2450000
KS ci ratio: 1.979740e-01	ci left: 1.441643e-04	ci right 1.762204e-04	k: 391	n:2450000
TNXB   2450000 perm   3170 sec   (773 perm/sec)   p_kst 1.595918e-04   p_cons 7.802702e-01   p_joint 7.865306e-04

Joint ci ratio: 8.903282e-02	ci left: 7.523351e-04	ci right 8.228324e-04	k: 1936	n:2460000
Cons ci ratio: 1.326186e-03	ci left: 7.797808e-01	ci right 7.808161e-01	k: 1919535	n:2460000
KS ci ratio: 1.974709e-01	ci left: 1.443510e-04	ci right 1.763573e-04	k: 393	n:2460000
TNXB   2460000 perm   3193 sec   (771 perm/sec)   p_kst 1.597561e-04   p_cons 7.802988e-01   p_joint 7.869919e-04

Joint ci ratio: 8.891818e-02	ci left: 7.512684e-04	ci right 8.215704e-04	k: 1941	n:2470000
Cons ci ratio: 1.323544e-03	ci left: 7.797702e-01	ci right 7.808033e-01	k: 1927309	n:2470000
KS ci ratio: 1.974710e-01	ci left: 1.437666e-04	ci right 1.756433e-04	k: 393	n:2470000
TNXB   2470000 perm   3214 sec   (768 perm/sec)   p_kst 1.591093e-04   p_cons 7.802870e-01   p_joint 7.858300e-04

Joint ci ratio: 8.871283e-02	ci left: 7.517876e-04	ci right 8.219672e-04	k: 1950	n:2480000
Cons ci ratio: 1.320829e-03	ci left: 7.797825e-01	ci right 7.808136e-01	k: 1935140	n:2480000
KS ci ratio: 1.972209e-01	ci left: 1.435702e-04	ci right 1.753582e-04	k: 394	n:2480000
TNXB   2480000 perm   3237 sec   (766 perm/sec)   p_kst 1.588710e-04   p_cons 7.802984e-01   p_joint 7.862903e-04

Joint ci ratio: 8.853151e-02	ci left: 7.519100e-04	ci right 8.219502e-04	k: 1958	n:2490000
Cons ci ratio: 1.318177e-03	ci left: 7.797828e-01	ci right 7.808117e-01	k: 1942941	n:2490000
KS ci ratio: 1.967234e-01	ci left: 1.437572e-04	ci right 1.754967e-04	k: 396	n:2490000
TNXB   2490000 perm   3259 sec   (764 perm/sec)   p_kst 1.590361e-04   p_cons 7.802976e-01   p_joint 7.863454e-04

Joint ci ratio: 8.832882e-02	ci left: 7.524227e-04	ci right 8.223420e-04	k: 1967	n:2500000
Cons ci ratio: 1.315498e-03	ci left: 7.797942e-01	ci right 7.808211e-01	k: 1950770	n:2500000
KS ci ratio: 1.967235e-01	ci left: 1.431822e-04	ci right 1.747947e-04	k: 396	n:2500000
TNXB   2500000 perm   3281 sec   (762 perm/sec)   p_kst 1.584000e-04   p_cons 7.803080e-01   p_joint 7.868000e-04

Joint ci ratio: 8.828407e-02	ci left: 7.502042e-04	ci right 8.198801e-04	k: 1969	n:2510000
Cons ci ratio: 1.312899e-03	ci left: 7.797889e-01	ci right 7.808137e-01	k: 1958557	n:2510000
KS ci ratio: 1.964762e-01	ci left: 1.429905e-04	ci right 1.745163e-04	k: 397	n:2510000
TNXB   2510000 perm   3303 sec   (760 perm/sec)   p_kst 1.581673e-04   p_cons 7.803016e-01   p_joint 7.844622e-04

Joint ci ratio: 8.832910e-02	ci left: 7.464510e-04	ci right 8.158155e-04	k: 1967	n:2520000
Cons ci ratio: 1.310296e-03	ci left: 7.797887e-01	ci right 7.808115e-01	k: 1966357	n:2520000
KS ci ratio: 1.957398e-01	ci left: 1.435551e-04	ci right 1.750726e-04	k: 400	n:2520000
TNXB   2520000 perm   3325 sec   (758 perm/sec)   p_kst 1.587302e-04   p_cons 7.803004e-01   p_joint 7.805556e-04

Joint ci ratio: 8.815011e-02	ci left: 7.465929e-04	ci right 8.158228e-04	k: 1975	n:2530000
Cons ci ratio: 1.307692e-03	ci left: 7.797928e-01	ci right 7.808136e-01	k: 1974168	n:2530000
KS ci ratio: 1.945307e-01	ci left: 1.448675e-04	ci right 1.764534e-04	k: 405	n:2530000
TNXB   2530000 perm   3348 sec   (756 perm/sec)   p_kst 1.600791e-04   p_cons 7.803036e-01   p_joint 7.806324e-04

Joint ci ratio: 8.837432e-02	ci left: 7.398033e-04	ci right 8.085871e-04	k: 1965	n:2540000
Cons ci ratio: 1.305161e-03	ci left: 7.797820e-01	ci right 7.808008e-01	k: 1981941	n:2540000
KS ci ratio: 1.942916e-01	ci left: 1.446717e-04	ci right 1.761715e-04	k: 406	n:2540000
TNXB   2540000 perm   3371 sec   (754 perm/sec)   p_kst 1.598425e-04   p_cons 7.802917e-01   p_joint 7.736220e-04

Joint ci ratio: 8.819506e-02	ci left: 7.399702e-04	ci right 8.086227e-04	k: 1973	n:2550000
Cons ci ratio: 1.302708e-03	ci left: 7.797544e-01	ci right 7.807712e-01	k: 1989671	n:2550000
KS ci ratio: 1.938159e-01	ci left: 1.448505e-04	ci right 1.763030e-04	k: 408	n:2550000
TNXB   2550000 perm   3394 sec   (751 perm/sec)   p_kst 1.600000e-04   p_cons 7.802631e-01   p_joint 7.737255e-04

Joint ci ratio: 8.790598e-02	ci left: 7.420460e-04	ci right 8.106539e-04	k: 1986	n:2560000
Cons ci ratio: 1.300125e-03	ci left: 7.797649e-01	ci right 7.807798e-01	k: 1997498	n:2560000
KS ci ratio: 1.938160e-01	ci left: 1.442847e-04	ci right 1.756143e-04	k: 408	n:2560000
TNXB   2560000 perm   3417 sec   (749 perm/sec)   p_kst 1.593750e-04   p_cons 7.802727e-01   p_joint 7.757812e-04

Joint ci ratio: 8.912646e-02	ci left: 7.186117e-04	ci right 7.860234e-04	k: 1932	n:2570000
Cons ci ratio: 1.297669e-03	ci left: 7.797458e-01	ci right 7.807587e-01	k: 2005249	n:2570000
KS ci ratio: 1.933438e-01	ci left: 1.444638e-04	ci right 1.757469e-04	k: 410	n:2570000
TNXB   2570000 perm   3439 sec   (747 perm/sec)   p_kst 1.595331e-04   p_cons 7.802525e-01   p_joint 7.517510e-04

Joint ci ratio: 8.898849e-02	ci left: 7.181001e-04	ci right 7.853542e-04	k: 1938	n:2580000
Cons ci ratio: 1.295145e-03	ci left: 7.797485e-01	ci right 7.807594e-01	k: 2013056	n:2580000
KS ci ratio: 1.933439e-01	ci left: 1.439039e-04	ci right 1.750657e-04	k: 410	n:2580000
TNXB   2580000 perm   3462 sec   (745 perm/sec)   p_kst 1.589147e-04   p_cons 7.802543e-01   p_joint 7.511628e-04

Joint ci ratio: 8.896566e-02	ci left: 7.157050e-04	ci right 7.827166e-04	k: 1939	n:2590000
Cons ci ratio: 1.292682e-03	ci left: 7.797388e-01	ci right 7.807478e-01	k: 2020831	n:2590000
KS ci ratio: 1.933440e-01	ci left: 1.433482e-04	ci right 1.743898e-04	k: 410	n:2590000
TNXB   2590000 perm   3485 sec   (743 perm/sec)   p_kst 1.583012e-04   p_cons 7.802436e-01   p_joint 7.486486e-04

Joint ci ratio: 8.878278e-02	ci left: 7.159609e-04	ci right 7.828515e-04	k: 1947	n:2600000
Cons ci ratio: 1.290202e-03	ci left: 7.797377e-01	ci right 7.807447e-01	k: 2028628	n:2600000
KS ci ratio: 1.928752e-01	ci left: 1.435289e-04	ci right 1.745254e-04	k: 412	n:2600000
TNXB   2600000 perm   3508 sec   (741 perm/sec)   p_kst 1.584615e-04   p_cons 7.802415e-01   p_joint 7.488462e-04

Joint ci ratio: 8.869183e-02	ci left: 7.147162e-04	ci right 7.814186e-04	k: 1951	n:2610000
Cons ci ratio: 1.287752e-03	ci left: 7.797324e-01	ci right 7.807375e-01	k: 2036414	n:2610000
KS ci ratio: 1.926422e-01	ci left: 1.433437e-04	ci right 1.742583e-04	k: 413	n:2610000
TNXB   2610000 perm   3532 sec   (739 perm/sec)   p_kst 1.582375e-04   p_cons 7.802352e-01   p_joint 7.475096e-04

Joint ci ratio: 8.910404e-02	ci left: 7.052707e-04	ci right 7.714134e-04	k: 1933	n:2620000
Cons ci ratio: 1.285249e-03	ci left: 7.797447e-01	ci right 7.807478e-01	k: 2044246	n:2620000
KS ci ratio: 1.924100e-01	ci left: 1.431598e-04	ci right 1.739933e-04	k: 414	n:2620000
TNXB   2620000 perm   3554 sec   (737 perm/sec)   p_kst 1.580153e-04   p_cons 7.802466e-01   p_joint 7.377863e-04

Joint ci ratio: 8.901210e-02	ci left: 7.040761e-04	ci right 7.700351e-04	k: 1937	n:2630000
Cons ci ratio: 1.282810e-03	ci left: 7.797439e-01	ci right 7.807452e-01	k: 2052044	n:2630000
KS ci ratio: 1.921786e-01	ci left: 1.429774e-04	ci right 1.737302e-04	k: 415	n:2630000
TNXB   2630000 perm   3577 sec   (735 perm/sec)   p_kst 1.577947e-04   p_cons 7.802449e-01   p_joint 7.365019e-04

Joint ci ratio: 8.896629e-02	ci left: 7.021498e-04	ci right 7.678927e-04	k: 1939	n:2640000
Cons ci ratio: 1.280397e-03	ci left: 7.797398e-01	ci right 7.807392e-01	k: 2059833	n:2640000
KS ci ratio: 1.921786e-01	ci left: 1.424358e-04	ci right 1.730722e-04	k: 415	n:2640000
TNXB   2640000 perm   3600 sec   (733 perm/sec)   p_kst 1.571970e-04   p_cons 7.802398e-01   p_joint 7.344697e-04

Joint ci ratio: 8.880622e-02	ci left: 7.020830e-04	ci right 7.676952e-04	k: 1946	n:2650000
Cons ci ratio: 1.278031e-03	ci left: 7.797266e-01	ci right 7.807241e-01	k: 2067598	n:2650000
KS ci ratio: 1.917183e-01	ci left: 1.426168e-04	ci right 1.732100e-04	k: 417	n:2650000
TNXB   2650000 perm   3623 sec   (731 perm/sec)   p_kst 1.573585e-04   p_cons 7.802257e-01   p_joint 7.343396e-04

Joint ci ratio: 8.864702e-02	ci left: 7.020167e-04	ci right 7.674991e-04	k: 1953	n:2660000
Cons ci ratio: 1.275587e-03	ci left: 7.797384e-01	ci right 7.807340e-01	k: 2075429	n:2660000
KS ci ratio: 1.910340e-01	ci left: 1.431544e-04	ci right 1.737406e-04	k: 420	n:2660000
TNXB   2660000 perm   3646 sec   (729 perm/sec)   p_kst 1.578947e-04   p_cons 7.802365e-01   p_joint 7.342105e-04

Joint ci ratio: 8.851125e-02	ci left: 7.015849e-04	ci right 7.669215e-04	k: 1959	n:2670000
Cons ci ratio: 1.273259e-03	ci left: 7.797223e-01	ci right 7.807161e-01	k: 2083186	n:2670000
KS ci ratio: 1.908075e-01	ci left: 1.429749e-04	ci right 1.734823e-04	k: 421	n:2670000
TNXB   2670000 perm   3670 sec   (728 perm/sec)   p_kst 1.576779e-04   p_cons 7.802195e-01   p_joint 7.337079e-04

Joint ci ratio: 8.837611e-02	ci left: 7.011563e-04	ci right 7.663482e-04	k: 1965	n:2680000
Cons ci ratio: 1.270818e-03	ci left: 7.797403e-01	ci right 7.807322e-01	k: 2091034	n:2680000
KS ci ratio: 1.905818e-01	ci left: 1.427967e-04	ci right 1.732259e-04	k: 422	n:2680000
TNXB   2680000 perm   3693 sec   (726 perm/sec)   p_kst 1.574627e-04   p_cons 7.802366e-01   p_joint 7.332090e-04

Joint ci ratio: 9.837152e-02	ci left: 5.609360e-04	ci right 6.193299e-04	k: 1586	n:2690000
Cons ci ratio: 1.268503e-03	ci left: 7.797277e-01	ci right 7.807178e-01	k: 2098800	n:2690000
KS ci ratio: 1.901329e-01	ci left: 1.429740e-04	ci right 1.733608e-04	k: 424	n:2690000
TNXB   2690000 perm   3717 sec   (724 perm/sec)   p_kst 1.576208e-04   p_cons 7.802230e-01   p_joint 5.895911e-04

Joint ci ratio: 9.803227e-02	ci left: 5.628325e-04	ci right 6.212102e-04	k: 1597	n:2700000
Cons ci ratio: 1.266091e-03	ci left: 7.797452e-01	ci right 7.807334e-01	k: 2106647	n:2700000
KS ci ratio: 1.896871e-01	ci left: 1.431500e-04	ci right 1.734947e-04	k: 426	n:2700000
TNXB   2700000 perm   3740 sec   (722 perm/sec)   p_kst 1.577778e-04   p_cons 7.802396e-01   p_joint 5.914815e-04

Joint ci ratio: 9.790984e-02	ci left: 5.621955e-04	ci right 6.204300e-04	k: 1601	n:2710000
Cons ci ratio: 1.263778e-03	ci left: 7.797393e-01	ci right 7.807257e-01	k: 2114431	n:2710000
KS ci ratio: 1.892444e-01	ci left: 1.433247e-04	ci right 1.736275e-04	k: 428	n:2710000
TNXB   2710000 perm   3764 sec   (720 perm/sec)   p_kst 1.579336e-04   p_cons 7.802328e-01   p_joint 5.907749e-04

Joint ci ratio: 9.781834e-02	ci left: 5.612046e-04	ci right 6.192790e-04	k: 1604	n:2720000
Cons ci ratio: 1.261461e-03	ci left: 7.797379e-01	ci right 7.807225e-01	k: 2122227	n:2720000
KS ci ratio: 1.890242e-01	ci left: 1.431480e-04	ci right 1.733742e-04	k: 429	n:2720000
TNXB   2720000 perm   3788 sec   (718 perm/sec)   p_kst 1.577206e-04   p_cons 7.802305e-01   p_joint 5.897059e-04

Joint ci ratio: 9.760571e-02	ci left: 5.616503e-04	ci right 6.196373e-04	k: 1611	n:2730000
Cons ci ratio: 1.259324e-03	ci left: 7.796911e-01	ci right 7.806739e-01	k: 2129899	n:2730000
KS ci ratio: 1.885861e-01	ci left: 1.433217e-04	ci right 1.735063e-04	k: 431	n:2730000
TNXB   2730000 perm   3811 sec   (716 perm/sec)   p_kst 1.578755e-04   p_cons 7.801828e-01   p_joint 5.901099e-04

Joint ci ratio: 9.736437e-02	ci left: 5.624490e-04	ci right 6.203667e-04	k: 1619	n:2740000
Cons ci ratio: 1.257011e-03	ci left: 7.796953e-01	ci right 7.806764e-01	k: 2137710	n:2740000
KS ci ratio: 1.879347e-01	ci left: 1.438419e-04	ci right 1.740195e-04	k: 434	n:2740000
TNXB   2740000 perm   3835 sec   (714 perm/sec)   p_kst 1.583942e-04   p_cons 7.801861e-01   p_joint 5.908759e-04

Joint ci ratio: 9.715467e-02	ci left: 5.628873e-04	ci right 6.207182e-04	k: 1626	n:2750000
Cons ci ratio: 1.254678e-03	ci left: 7.797086e-01	ci right 7.806879e-01	k: 2145546	n:2750000
KS ci ratio: 1.877190e-01	ci left: 1.436654e-04	ci right 1.737674e-04	k: 435	n:2750000
TNXB   2750000 perm   3860 sec   (712 perm/sec)   p_kst 1.581818e-04   p_cons 7.801985e-01   p_joint 5.912727e-04

Joint ci ratio: 9.694633e-02	ci left: 5.633225e-04	ci right 6.210670e-04	k: 1633	n:2760000
Cons ci ratio: 1.252430e-03	ci left: 7.797023e-01	ci right 7.806797e-01	k: 2153328	n:2760000
KS ci ratio: 1.875042e-01	ci left: 1.434901e-04	ci right 1.735171e-04	k: 436	n:2760000
TNXB   2760000 perm   3884 sec   (711 perm/sec)   p_kst 1.579710e-04   p_cons 7.801913e-01   p_joint 5.916667e-04

Joint ci ratio: 9.676882e-02	ci left: 5.634025e-04	ci right 6.210434e-04	k: 1639	n:2770000
Cons ci ratio: 1.250213e-03	ci left: 7.796905e-01	ci right 7.806663e-01	k: 2161095	n:2770000
KS ci ratio: 1.875042e-01	ci left: 1.429721e-04	ci right 1.728907e-04	k: 436	n:2770000
TNXB   2770000 perm   3909 sec   (709 perm/sec)   p_kst 1.574007e-04   p_cons 7.801787e-01   p_joint 5.916968e-04

Joint ci ratio: 9.670994e-02	ci left: 5.620779e-04	ci right 6.195462e-04	k: 1641	n:2780000
Cons ci ratio: 1.248018e-03	ci left: 7.796760e-01	ci right 7.806500e-01	k: 2168854	n:2780000
KS ci ratio: 1.875043e-01	ci left: 1.424578e-04	ci right 1.722688e-04	k: 436	n:2780000
TNXB   2780000 perm   3933 sec   (707 perm/sec)   p_kst 1.568345e-04   p_cons 7.801633e-01   p_joint 5.902878e-04

Joint ci ratio: 9.673952e-02	ci left: 5.597135e-04	ci right 6.169586e-04	k: 1640	n:2790000
Cons ci ratio: 1.245798e-03	ci left: 7.796720e-01	ci right 7.806443e-01	k: 2176642	n:2790000
KS ci ratio: 1.864406e-01	ci left: 1.436555e-04	ci right 1.735272e-04	k: 441	n:2790000
TNXB   2790000 perm   3958 sec   (705 perm/sec)   p_kst 1.580645e-04   p_cons 7.801584e-01   p_joint 5.878136e-04

Joint ci ratio: 9.650454e-02	ci left: 5.605026e-04	ci right 6.176813e-04	k: 1648	n:2800000
Cons ci ratio: 1.243577e-03	ci left: 7.796712e-01	ci right 7.806418e-01	k: 2184439	n:2800000
KS ci ratio: 1.862301e-01	ci left: 1.434829e-04	ci right 1.732813e-04	k: 442	n:2800000
TNXB   2800000 perm   3983 sec   (703 perm/sec)   p_kst 1.578571e-04   p_cons 7.801568e-01   p_joint 5.885714e-04

Joint ci ratio: 9.638774e-02	ci left: 5.598971e-04	ci right 6.169410e-04	k: 1652	n:2810000
Cons ci ratio: 1.241358e-03	ci left: 7.796733e-01	ci right 7.806421e-01	k: 2192244	n:2810000
KS ci ratio: 1.860202e-01	ci left: 1.433116e-04	ci right 1.730370e-04	k: 443	n:2810000
TNXB   2810000 perm   4008 sec   (701 perm/sec)   p_kst 1.576512e-04   p_cons 7.801580e-01   p_joint 5.879004e-04

Joint ci ratio: 9.662207e-02	ci left: 5.551431e-04	ci right 6.118480e-04	k: 1644	n:2820000
Cons ci ratio: 1.239053e-03	ci left: 7.797024e-01	ci right 7.806694e-01	k: 2200125	n:2820000
KS ci ratio: 1.856027e-01	ci left: 1.434796e-04	ci right 1.731656e-04	k: 445	n:2820000
TNXB   2820000 perm   4034 sec   (699 perm/sec)   p_kst 1.578014e-04   p_cons 7.801862e-01   p_joint 5.829787e-04

Joint ci ratio: 9.638794e-02	ci left: 5.559401e-04	ci right 6.125810e-04	k: 1652	n:2830000
Cons ci ratio: 1.236881e-03	ci left: 7.796980e-01	ci right 7.806633e-01	k: 2207912	n:2830000
KS ci ratio: 1.847758e-01	ci left: 1.443205e-04	ci right 1.740326e-04	k: 449	n:2830000
TNXB   2830000 perm   4060 sec   (697 perm/sec)   p_kst 1.586572e-04   p_cons 7.801809e-01   p_joint 5.837456e-04

Joint ci ratio: 9.618448e-02	ci left: 5.563880e-04	ci right 6.129482e-04	k: 1659	n:2840000
Cons ci ratio: 1.234634e-03	ci left: 7.797176e-01	ci right 7.806812e-01	k: 2215767	n:2840000
KS ci ratio: 1.843666e-01	ci left: 1.444840e-04	ci right 1.741565e-04	k: 451	n:2840000
TNXB   2840000 perm   4086 sec   (695 perm/sec)   p_kst 1.588028e-04   p_cons 7.801996e-01   p_joint 5.841549e-04

Joint ci ratio: 9.606883e-02	ci left: 5.558056e-04	ci right 6.122347e-04	k: 1663	n:2850000
Cons ci ratio: 1.232474e-03	ci left: 7.797163e-01	ci right 7.806782e-01	k: 2223563	n:2850000
KS ci ratio: 1.841630e-01	ci left: 1.443118e-04	ci right 1.739125e-04	k: 452	n:2850000
TNXB   2850000 perm   4112 sec   (693 perm/sec)   p_kst 1.585965e-04   p_cons 7.801975e-01   p_joint 5.835088e-04

Joint ci ratio: 9.595360e-02	ci left: 5.552272e-04	ci right 6.115262e-04	k: 1667	n:2860000
Cons ci ratio: 1.230404e-03	ci left: 7.796930e-01	ci right 7.806533e-01	k: 2231296	n:2860000
KS ci ratio: 1.841630e-01	ci left: 1.438072e-04	ci right 1.733044e-04	k: 452	n:2860000
TNXB   2860000 perm   4138 sec   (691 perm/sec)   p_kst 1.580420e-04   p_cons 7.801734e-01   p_joint 5.828671e-04

Joint ci ratio: 9.641752e-02	ci left: 5.478517e-04	ci right 6.036866e-04	k: 1651	n:2870000
Cons ci ratio: 1.228234e-03	ci left: 7.797006e-01	ci right 7.806591e-01	k: 2239117	n:2870000
KS ci ratio: 1.841631e-01	ci left: 1.433061e-04	ci right 1.727006e-04	k: 452	n:2870000
TNXB   2870000 perm   4165 sec   (689 perm/sec)   p_kst 1.574913e-04   p_cons 7.801801e-01   p_joint 5.752613e-04

Joint ci ratio: 9.621387e-02	ci left: 5.483215e-04	ci right 6.040796e-04	k: 1658	n:2880000
Cons ci ratio: 1.226183e-03	ci left: 7.796782e-01	ci right 7.806351e-01	k: 2246852	n:2880000
KS ci ratio: 1.839602e-01	ci left: 1.431397e-04	ci right 1.724641e-04	k: 453	n:2880000
TNXB   2880000 perm   4193 sec   (687 perm/sec)   p_kst 1.572917e-04   p_cons 7.801569e-01   p_joint 5.756944e-04

Joint ci ratio: 9.668158e-02	ci left: 5.410213e-04	ci right 5.963196e-04	k: 1642	n:2890000
Cons ci ratio: 1.224044e-03	ci left: 7.796833e-01	ci right 7.806386e-01	k: 2254666	n:2890000
KS ci ratio: 1.839602e-01	ci left: 1.426444e-04	ci right 1.718674e-04	k: 453	n:2890000
TNXB   2890000 perm   4220 sec   (685 perm/sec)   p_kst 1.567474e-04   p_cons 7.801612e-01   p_joint 5.681661e-04

Joint ci ratio: 9.662285e-02	ci left: 5.398286e-04	ci right 5.949697e-04	k: 1644	n:2900000
Cons ci ratio: 1.221908e-03	ci left: 7.796908e-01	ci right 7.806445e-01	k: 2262487	n:2900000
KS ci ratio: 1.839603e-01	ci left: 1.421526e-04	ci right 1.712747e-04	k: 453	n:2900000
TNXB   2900000 perm   4247 sec   (683 perm/sec)   p_kst 1.562069e-04   p_cons 7.801679e-01   p_joint 5.668966e-04

Joint ci ratio: 9.638871e-02	ci left: 5.406564e-04	ci right 5.957406e-04	k: 1652	n:2910000
Cons ci ratio: 1.219770e-03	ci left: 7.797021e-01	ci right 7.806541e-01	k: 2270319	n:2910000
KS ci ratio: 1.829555e-01	ci left: 1.433034e-04	ci right 1.724832e-04	k: 458	n:2910000
TNXB   2910000 perm   4273 sec   (681 perm/sec)   p_kst 1.573883e-04   p_cons 7.801784e-01   p_joint 5.676976e-04

Joint ci ratio: 9.624328e-02	ci left: 5.404759e-04	ci right 5.954539e-04	k: 1657	n:2920000
Cons ci ratio: 1.217690e-03	ci left: 7.796999e-01	ci right 7.806502e-01	k: 2278112	n:2920000
KS ci ratio: 1.827565e-01	ci left: 1.431394e-04	ci right 1.722506e-04	k: 459	n:2920000
TNXB   2920000 perm   4299 sec   (679 perm/sec)   p_kst 1.571918e-04   p_cons 7.801753e-01   p_joint 5.674658e-04

Joint ci ratio: 9.659376e-02	ci left: 5.346344e-04	ci right 5.892274e-04	k: 1645	n:2930000
Cons ci ratio: 1.215687e-03	ci left: 7.796789e-01	ci right 7.806277e-01	k: 2285850	n:2930000
KS ci ratio: 1.823605e-01	ci left: 1.433023e-04	ci right 1.723765e-04	k: 461	n:2930000
TNXB   2930000 perm   4327 sec   (677 perm/sec)   p_kst 1.573379e-04   p_cons 7.801536e-01   p_joint 5.614334e-04

Joint ci ratio: 9.659385e-02	ci left: 5.328159e-04	ci right 5.872233e-04	k: 1645	n:2940000
Cons ci ratio: 1.213668e-03	ci left: 7.796656e-01	ci right 7.806128e-01	k: 2293610	n:2940000
KS ci ratio: 1.823605e-01	ci left: 1.428149e-04	ci right 1.717902e-04	k: 461	n:2940000
TNXB   2940000 perm   4353 sec   (675 perm/sec)   p_kst 1.568027e-04   p_cons 7.801395e-01   p_joint 5.595238e-04

Joint ci ratio: 9.638908e-02	ci left: 5.333253e-04	ci right 5.876628e-04	k: 1652	n:2950000
Cons ci ratio: 1.211561e-03	ci left: 7.796802e-01	ci right 7.806257e-01	k: 2301452	n:2950000
KS ci ratio: 1.819671e-01	ci left: 1.429778e-04	ci right 1.719167e-04	k: 463	n:2950000
TNXB   2950000 perm   4380 sec   (673 perm/sec)   p_kst 1.569492e-04   p_cons 7.801532e-01   p_joint 5.600000e-04

Joint ci ratio: 9.621462e-02	ci left: 5.335018e-04	ci right 5.877533e-04	k: 1658	n:2960000
Cons ci ratio: 1.209515e-03	ci left: 7.796801e-01	ci right 7.806241e-01	k: 2309251	n:2960000
KS ci ratio: 1.815762e-01	ci left: 1.431397e-04	ci right 1.720422e-04	k: 465	n:2960000
TNXB   2960000 perm   4406 sec   (672 perm/sec)   p_kst 1.570946e-04   p_cons 7.801524e-01   p_joint 5.601351e-04

Joint ci ratio: 9.650617e-02	ci left: 5.284195e-04	ci right 5.823263e-04	k: 1648	n:2970000
Cons ci ratio: 1.207486e-03	ci left: 7.796784e-01	ci right 7.806207e-01	k: 2317045	n:2970000
KS ci ratio: 1.813817e-01	ci left: 1.429791e-04	ci right 1.718150e-04	k: 466	n:2970000
TNXB   2970000 perm   4432 sec   (670 perm/sec)   p_kst 1.569024e-04   p_cons 7.801498e-01   p_joint 5.548822e-04

Joint ci ratio: 9.668241e-02	ci left: 5.246815e-04	ci right 5.783102e-04	k: 1642	n:2980000
Cons ci ratio: 1.205424e-03	ci left: 7.796891e-01	ci right 7.806298e-01	k: 2324876	n:2980000
KS ci ratio: 1.813817e-01	ci left: 1.424993e-04	ci right 1.712384e-04	k: 466	n:2980000
TNXB   2980000 perm   4459 sec   (668 perm/sec)   p_kst 1.563758e-04   p_cons 7.801597e-01   p_joint 5.510067e-04

Joint ci ratio: 9.659430e-02	ci left: 5.239058e-04	ci right 5.774036e-04	k: 1645	n:2990000
Cons ci ratio: 1.203354e-03	ci left: 7.797047e-01	ci right 7.806439e-01	k: 2332722	n:2990000
KS ci ratio: 1.811879e-01	ci left: 1.423420e-04	ci right 1.710153e-04	k: 467	n:2990000
TNXB   2990000 perm   4485 sec   (667 perm/sec)   p_kst 1.561873e-04   p_cons 7.801746e-01   p_joint 5.501672e-04

Joint ci ratio: 9.671204e-02	ci left: 5.208583e-04	ci right 5.741135e-04	k: 1641	n:3000000
Cons ci ratio: 1.201410e-03	ci left: 7.796876e-01	ci right 7.806252e-01	k: 2340470	n:3000000
KS ci ratio: 1.808019e-01	ci left: 1.425040e-04	ci right 1.711421e-04	k: 469	n:3000000
TNXB   3000000 perm   4510 sec   (665 perm/sec)   p_kst 1.563333e-04   p_cons 7.801567e-01   p_joint 5.470000e-04

Joint ci ratio: 9.653582e-02	ci left: 5.210730e-04	ci right 5.742476e-04	k: 1647	n:3010000
Cons ci ratio: 1.199440e-03	ci left: 7.796805e-01	ci right 7.806166e-01	k: 2348248	n:3010000
KS ci ratio: 1.802276e-01	ci left: 1.429822e-04	ci right 1.716152e-04	k: 472	n:3010000
TNXB   3010000 perm   4537 sec   (663 perm/sec)   p_kst 1.568106e-04   p_cons 7.801488e-01   p_joint 5.471761e-04

Joint ci ratio: 9.638971e-02	ci left: 5.209633e-04	ci right 5.740417e-04	k: 1652	n:3020000
Cons ci ratio: 1.197453e-03	ci left: 7.796812e-01	ci right 7.806157e-01	k: 2356049	n:3020000
KS ci ratio: 1.794703e-01	ci left: 1.437737e-04	ci right 1.724310e-04	k: 476	n:3020000
TNXB   3020000 perm   4564 sec   (662 perm/sec)   p_kst 1.576159e-04   p_cons 7.801487e-01   p_joint 5.470199e-04

Joint ci ratio: 9.624427e-02	ci left: 5.208544e-04	ci right 5.738371e-04	k: 1657	n:3030000
Cons ci ratio: 1.195560e-03	ci left: 7.796577e-01	ci right 7.805907e-01	k: 2363777	n:3030000
KS ci ratio: 1.789085e-01	ci left: 1.442449e-04	ci right 1.728964e-04	k: 479	n:3030000
TNXB   3030000 perm   4590 sec   (660 perm/sec)   p_kst 1.580858e-04   p_cons 7.801244e-01   p_joint 5.468647e-04

Joint ci ratio: 9.718731e-02	ci left: 5.088692e-04	ci right 5.611688e-04	k: 1625	n:3040000
Cons ci ratio: 1.193465e-03	ci left: 7.796949e-01	ci right 7.806263e-01	k: 2371689	n:3040000
KS ci ratio: 1.789085e-01	ci left: 1.437704e-04	ci right 1.723276e-04	k: 479	n:3040000
TNXB   3040000 perm   4617 sec   (658 perm/sec)   p_kst 1.575658e-04   p_cons 7.801609e-01   p_joint 5.345395e-04

Joint ci ratio: 9.700848e-02	ci left: 5.091202e-04	ci right 5.613439e-04	k: 1631	n:3050000
Cons ci ratio: 1.191488e-03	ci left: 7.797010e-01	ci right 7.806309e-01	k: 2379507	n:3050000
KS ci ratio: 1.787225e-01	ci left: 1.436122e-04	ci right 1.721051e-04	k: 480	n:3050000
TNXB   3050000 perm   4643 sec   (657 perm/sec)   p_kst 1.573770e-04   p_cons 7.801662e-01   p_joint 5.347541e-04

Joint ci ratio: 9.683063e-02	ci left: 5.093697e-04	ci right 5.615177e-04	k: 1637	n:3060000
Cons ci ratio: 1.189474e-03	ci left: 7.797209e-01	ci right 7.806492e-01	k: 2387367	n:3060000
KS ci ratio: 1.785370e-01	ci left: 1.434550e-04	ci right 1.718841e-04	k: 481	n:3060000
TNXB   3060000 perm   4669 sec   (655 perm/sec)   p_kst 1.571895e-04   p_cons 7.801853e-01   p_joint 5.349673e-04

Joint ci ratio: 9.665376e-02	ci left: 5.096176e-04	ci right 5.616903e-04	k: 1643	n:3070000
Cons ci ratio: 1.187535e-03	ci left: 7.797217e-01	ci right 7.806485e-01	k: 2395169	n:3070000
KS ci ratio: 1.785371e-01	ci left: 1.429878e-04	ci right 1.713242e-04	k: 481	n:3070000
TNXB   3070000 perm   4696 sec   (654 perm/sec)   p_kst 1.566775e-04   p_cons 7.801853e-01   p_joint 5.351792e-04

Joint ci ratio: 9.656573e-02	ci left: 5.089135e-04	ci right 5.608642e-04	k: 1646	n:3080000
Cons ci ratio: 1.185615e-03	ci left: 7.797196e-01	ci right 7.806449e-01	k: 2402962	n:3080000
KS ci ratio: 1.781678e-01	ci left: 1.431439e-04	ci right 1.714463e-04	k: 483	n:3080000
TNXB   3080000 perm   4722 sec   (652 perm/sec)   p_kst 1.568182e-04   p_cons 7.801825e-01   p_joint 5.344156e-04

Joint ci ratio: 9.644871e-02	ci left: 5.085298e-04	ci right 5.603748e-04	k: 1650	n:3090000
Cons ci ratio: 1.183803e-03	ci left: 7.796889e-01	ci right 7.806128e-01	k: 2410667	n:3090000
KS ci ratio: 1.778008e-01	ci left: 1.432990e-04	ci right 1.715675e-04	k: 485	n:3090000
TNXB   3090000 perm   4749 sec   (651 perm/sec)   p_kst 1.569579e-04   p_cons 7.801511e-01   p_joint 5.339806e-04

Joint ci ratio: 9.806672e-02	ci left: 4.898934e-04	ci right 5.407246e-04	k: 1596	n:3100000
Cons ci ratio: 1.181734e-03	ci left: 7.797357e-01	ci right 7.806580e-01	k: 2418611	n:3100000
KS ci ratio: 1.776182e-01	ci left: 1.431450e-04	ci right 1.713510e-04	k: 486	n:3100000
TNXB   3100000 perm   4776 sec   (649 perm/sec)   p_kst 1.567742e-04   p_cons 7.801971e-01   p_joint 5.148387e-04

Joint ci ratio: 9.797477e-02	ci left: 4.892592e-04	ci right 5.399742e-04	k: 1599	n:3110000
Cons ci ratio: 1.179861e-03	ci left: 7.797281e-01	ci right 7.806489e-01	k: 2426387	n:3110000
KS ci ratio: 1.774361e-01	ci left: 1.429920e-04	ci right 1.711358e-04	k: 487	n:3110000
TNXB   3110000 perm   4803 sec   (648 perm/sec)   p_kst 1.565916e-04   p_cons 7.801887e-01   p_joint 5.141479e-04

Joint ci ratio: 8.725546e-02	ci left: 6.182613e-04	ci right 6.749798e-04	k: 2016	n:3120000
Cons ci ratio: 1.178003e-03	ci left: 7.797189e-01	ci right 7.806383e-01	k: 2434158	n:3120000
KS ci ratio: 1.767133e-01	ci left: 1.437589e-04	ci right 1.719261e-04	k: 491	n:3120000
TNXB   3120000 perm   4830 sec   (646 perm/sec)   p_kst 1.573718e-04   p_cons 7.801788e-01   p_joint 6.461538e-04

Joint ci ratio: 8.769168e-02	ci left: 6.100360e-04	ci right 6.662939e-04	k: 1996	n:3130000
Cons ci ratio: 1.176144e-03	ci left: 7.797127e-01	ci right 7.806306e-01	k: 2441938	n:3130000
KS ci ratio: 1.759992e-01	ci left: 1.445212e-04	ci right 1.727111e-04	k: 495	n:3130000
TNXB   3130000 perm   4857 sec   (644 perm/sec)   p_kst 1.581470e-04   p_cons 7.801719e-01   p_joint 6.376997e-04

Joint ci ratio: 8.766980e-02	ci left: 6.084046e-04	ci right 6.644974e-04	k: 1997	n:3140000
Cons ci ratio: 1.174304e-03	ci left: 7.797033e-01	ci right 7.806197e-01	k: 2449708	n:3140000
KS ci ratio: 1.759993e-01	ci left: 1.440609e-04	ci right 1.721611e-04	k: 495	n:3140000
TNXB   3140000 perm   4884 sec   (643 perm/sec)   p_kst 1.576433e-04   p_cons 7.801618e-01   p_joint 6.359873e-04

Joint ci ratio: 8.753847e-02	ci left: 6.083362e-04	ci right 6.643344e-04	k: 2003	n:3150000
Cons ci ratio: 1.172497e-03	ci left: 7.796870e-01	ci right 7.806020e-01	k: 2457456	n:3150000
KS ci ratio: 1.758221e-01	ci left: 1.439071e-04	ci right 1.719460e-04	k: 496	n:3150000
TNXB   3150000 perm   4912 sec   (641 perm/sec)   p_kst 1.574603e-04   p_cons 7.801448e-01   p_joint 6.358730e-04

Joint ci ratio: 8.745127e-02	ci left: 6.076492e-04	ci right 6.635256e-04	k: 2007	n:3160000
Cons ci ratio: 1.170711e-03	ci left: 7.796670e-01	ci right 7.805806e-01	k: 2465192	n:3160000
KS ci ratio: 1.758222e-01	ci left: 1.434517e-04	ci right 1.714018e-04	k: 496	n:3160000
TNXB   3160000 perm   4940 sec   (640 perm/sec)   p_kst 1.569620e-04   p_cons 7.801241e-01   p_joint 6.351266e-04

Joint ci ratio: 8.729923e-02	ci left: 6.078923e-04	ci right 6.636889e-04	k: 2014	n:3170000
Cons ci ratio: 1.168888e-03	ci left: 7.796604e-01	ci right 7.805725e-01	k: 2472970	n:3170000
KS ci ratio: 1.756456e-01	ci left: 1.433007e-04	ci right 1.711905e-04	k: 497	n:3170000
TNXB   3170000 perm   4967 sec   (638 perm/sec)   p_kst 1.567823e-04   p_cons 7.801167e-01   p_joint 6.353312e-04

Joint ci ratio: 8.704036e-02	ci left: 6.096720e-04	ci right 6.654576e-04	k: 2026	n:3180000
Cons ci ratio: 1.166988e-03	ci left: 7.796790e-01	ci right 7.805897e-01	k: 2480828	n:3180000
KS ci ratio: 1.751189e-01	ci left: 1.437521e-04	ci right 1.716369e-04	k: 500	n:3180000
TNXB   3180000 perm   4995 sec   (637 perm/sec)   p_kst 1.572327e-04   p_cons 7.801346e-01   p_joint 6.371069e-04

Joint ci ratio: 8.682640e-02	ci left: 6.108275e-04	ci right 6.665745e-04	k: 2036	n:3190000
Cons ci ratio: 1.165181e-03	ci left: 7.796727e-01	ci right 7.805820e-01	k: 2488607	n:3190000
KS ci ratio: 1.742514e-01	ci left: 1.448003e-04	ci right 1.727347e-04	k: 505	n:3190000
TNXB   3190000 perm   5023 sec   (635 perm/sec)   p_kst 1.583072e-04   p_cons 7.801276e-01   p_joint 6.382445e-04

Joint ci ratio: 8.727782e-02	ci left: 6.024989e-04	ci right 6.577862e-04	k: 2015	n:3200000
Cons ci ratio: 1.163405e-03	ci left: 7.796599e-01	ci right 7.805678e-01	k: 2496365	n:3200000
KS ci ratio: 1.740795e-01	ci left: 1.446467e-04	ci right 1.725210e-04	k: 506	n:3200000
TNXB   3200000 perm   5051 sec   (634 perm/sec)   p_kst 1.581250e-04   p_cons 7.801141e-01   p_joint 6.296875e-04

Joint ci ratio: 8.729957e-02	ci left: 6.003172e-04	ci right 6.554187e-04	k: 2014	n:3210000
Cons ci ratio: 1.161593e-03	ci left: 7.796599e-01	ci right 7.805664e-01	k: 2504164	n:3210000
KS ci ratio: 1.737371e-01	ci left: 1.447920e-04	ci right 1.726337e-04	k: 508	n:3210000
TNXB   3210000 perm   5079 sec   (632 perm/sec)   p_kst 1.582555e-04   p_cons 7.801134e-01   p_joint 6.274143e-04

Joint ci ratio: 8.721308e-02	ci left: 5.996680e-04	ci right 6.546526e-04	k: 2018	n:3220000
Cons ci ratio: 1.159784e-03	ci left: 7.796618e-01	ci right 7.805669e-01	k: 2511969	n:3220000
KS ci ratio: 1.737372e-01	ci left: 1.443423e-04	ci right 1.720976e-04	k: 508	n:3220000
TNXB   3220000 perm   5108 sec   (630 perm/sec)   p_kst 1.577640e-04   p_cons 7.801146e-01   p_joint 6.267081e-04

Joint ci ratio: 8.822462e-02	ci left: 5.838821e-04	ci right 6.380723e-04	k: 1972	n:3230000
Cons ci ratio: 1.157982e-03	ci left: 7.796640e-01	ci right 7.805677e-01	k: 2519775	n:3230000
KS ci ratio: 1.728900e-01	ci left: 1.453763e-04	ci right 1.731798e-04	k: 513	n:3230000
TNXB   3230000 perm   5136 sec   (629 perm/sec)   p_kst 1.588235e-04   p_cons 7.801161e-01   p_joint 6.105263e-04

Joint ci ratio: 8.804627e-02	ci left: 5.844948e-04	ci right 6.386264e-04	k: 1980	n:3240000
Cons ci ratio: 1.156234e-03	ci left: 7.796529e-01	ci right 7.805552e-01	k: 2527538	n:3240000
KS ci ratio: 1.725546e-01	ci left: 1.455182e-04	ci right 1.732893e-04	k: 515	n:3240000
TNXB   3240000 perm   5165 sec   (627 perm/sec)   p_kst 1.589506e-04   p_cons 7.801043e-01   p_joint 6.111111e-04

Joint ci ratio: 8.786900e-02	ci left: 5.851037e-04	ci right 6.391771e-04	k: 1988	n:3250000
Cons ci ratio: 1.154413e-03	ci left: 7.796656e-01	ci right 7.805665e-01	k: 2535378	n:3250000
KS ci ratio: 1.723877e-01	ci left: 1.453649e-04	ci right 1.730770e-04	k: 516	n:3250000
TNXB   3250000 perm   5193 sec   (626 perm/sec)   p_kst 1.587692e-04   p_cons 7.801163e-01   p_joint 6.116923e-04

Joint ci ratio: 8.780285e-02	ci left: 5.842089e-04	ci right 6.381569e-04	k: 1991	n:3260000
Cons ci ratio: 1.152657e-03	ci left: 7.796617e-01	ci right 7.805612e-01	k: 2543164	n:3260000
KS ci ratio: 1.723877e-01	ci left: 1.449190e-04	ci right 1.725461e-04	k: 516	n:3260000
TNXB   3260000 perm   5222 sec   (624 perm/sec)   p_kst 1.582822e-04   p_cons 7.801117e-01   p_joint 6.107362e-04

Joint ci ratio: 8.767092e-02	ci left: 5.842170e-04	ci right 6.380805e-04	k: 1997	n:3270000
Cons ci ratio: 1.150978e-03	ci left: 7.796369e-01	ci right 7.805351e-01	k: 2550882	n:3270000
KS ci ratio: 1.720552e-01	ci left: 1.450611e-04	ci right 1.726564e-04	k: 518	n:3270000
TNXB   3270000 perm   5251 sec   (623 perm/sec)   p_kst 1.584098e-04   p_cons 7.800862e-01   p_joint 6.107034e-04

Joint ci ratio: 8.751773e-02	ci left: 5.845232e-04	ci right 6.383160e-04	k: 2004	n:3280000
Cons ci ratio: 1.149247e-03	ci left: 7.796303e-01	ci right 7.805271e-01	k: 2558659	n:3280000
KS ci ratio: 1.717247e-01	ci left: 1.452023e-04	ci right 1.727660e-04	k: 520	n:3280000
TNXB   3280000 perm   5280 sec   (621 perm/sec)   p_kst 1.585366e-04   p_cons 7.800790e-01   p_joint 6.109756e-04

Joint ci ratio: 8.736534e-02	ci left: 5.848277e-04	ci right 6.385500e-04	k: 2011	n:3290000
Cons ci ratio: 1.147504e-03	ci left: 7.796295e-01	ci right 7.805250e-01	k: 2566455	n:3290000
KS ci ratio: 1.715601e-01	ci left: 1.450519e-04	ci right 1.725579e-04	k: 521	n:3290000
TNXB   3290000 perm   5309 sec   (620 perm/sec)   p_kst 1.583587e-04   p_cons 7.800775e-01   p_joint 6.112462e-04

Joint ci ratio: 8.719214e-02	ci left: 5.854268e-04	ci right 6.390921e-04	k: 2019	n:3300000
Cons ci ratio: 1.145803e-03	ci left: 7.796185e-01	ci right 7.805126e-01	k: 2574217	n:3300000
KS ci ratio: 1.710692e-01	ci left: 1.454824e-04	ci right 1.729830e-04	k: 524	n:3300000
TNXB   3300000 perm   5338 sec   (618 perm/sec)   p_kst 1.587879e-04   p_cons 7.800658e-01   p_joint 6.118182e-04

Joint ci ratio: 8.706294e-02	ci left: 5.854314e-04	ci right 6.390135e-04	k: 2025	n:3310000
Cons ci ratio: 1.144127e-03	ci left: 7.796023e-01	ci right 7.804951e-01	k: 2581962	n:3310000
KS ci ratio: 1.707443e-01	ci left: 1.456213e-04	ci right 1.730904e-04	k: 526	n:3310000
TNXB   3310000 perm   5367 sec   (617 perm/sec)   p_kst 1.589124e-04   p_cons 7.800489e-01   p_joint 6.117825e-04

Joint ci ratio: 8.699859e-02	ci left: 5.845520e-04	ci right 6.380120e-04	k: 2028	n:3320000
Cons ci ratio: 1.142347e-03	ci left: 7.796197e-01	ci right 7.805111e-01	k: 2589818	n:3320000
KS ci ratio: 1.707443e-01	ci left: 1.451827e-04	ci right 1.725691e-04	k: 526	n:3320000
TNXB   3320000 perm   5394 sec   (615 perm/sec)   p_kst 1.584337e-04   p_cons 7.800657e-01   p_joint 6.108434e-04

Joint ci ratio: 8.710613e-02	ci left: 5.813277e-04	ci right 6.345620e-04	k: 2023	n:3330000
Cons ci ratio: 1.140621e-03	ci left: 7.796232e-01	ci right 7.805132e-01	k: 2597628	n:3330000
KS ci ratio: 1.700999e-01	ci left: 1.458967e-04	ci right 1.733032e-04	k: 530	n:3330000
TNXB   3330000 perm   5423 sec   (614 perm/sec)   p_kst 1.591592e-04   p_cons 7.800685e-01   p_joint 6.075075e-04

Joint ci ratio: 8.732233e-02	ci left: 5.766584e-04	ci right 6.296028e-04	k: 2013	n:3340000
Cons ci ratio: 1.138916e-03	ci left: 7.796228e-01	ci right 7.805115e-01	k: 2605425	n:3340000
KS ci ratio: 1.696214e-01	ci left: 1.463199e-04	ci right 1.737207e-04	k: 533	n:3340000
TNXB   3340000 perm   5452 sec   (613 perm/sec)   p_kst 1.595808e-04   p_cons 7.800674e-01   p_joint 6.026946e-04

Joint ci ratio: 8.736582e-02	ci left: 5.743530e-04	ci right 6.271134e-04	k: 2011	n:3350000
Cons ci ratio: 1.137281e-03	ci left: 7.796035e-01	ci right 7.804909e-01	k: 2613159	n:3350000
KS ci ratio: 1.693046e-01	ci left: 1.464548e-04	ci right 1.738245e-04	k: 535	n:3350000
TNXB   3350000 perm   5480 sec   (611 perm/sec)   p_kst 1.597015e-04   p_cons 7.800475e-01   p_joint 6.002985e-04

Joint ci ratio: 8.719262e-02	ci left: 5.749726e-04	ci right 6.276799e-04	k: 2019	n:3360000
Cons ci ratio: 1.135671e-03	ci left: 7.795787e-01	ci right 7.804648e-01	k: 2620874	n:3360000
KS ci ratio: 1.689896e-01	ci left: 1.465890e-04	ci right 1.739275e-04	k: 537	n:3360000
TNXB   3360000 perm   5509 sec   (610 perm/sec)   p_kst 1.598214e-04   p_cons 7.800220e-01   p_joint 6.008929e-04

Joint ci ratio: 8.702045e-02	ci left: 5.755887e-04	ci right 6.282429e-04	k: 2027	n:3370000
Cons ci ratio: 1.133969e-03	ci left: 7.795844e-01	ci right 7.804692e-01	k: 2628691	n:3370000
KS ci ratio: 1.688328e-01	ci left: 1.464382e-04	ci right 1.737207e-04	k: 538	n:3370000
TNXB   3370000 perm   5537 sec   (609 perm/sec)   p_kst 1.596439e-04   p_cons 7.800270e-01   p_joint 6.014837e-04

Joint ci ratio: 8.682796e-02	ci left: 5.764906e-04	ci right 6.291048e-04	k: 2036	n:3380000
Cons ci ratio: 1.132155e-03	ci left: 7.796258e-01	ci right 7.805092e-01	k: 2636629	n:3380000
KS ci ratio: 1.685205e-01	ci left: 1.465716e-04	ci right 1.738234e-04	k: 540	n:3380000
TNXB   3380000 perm   5566 sec   (607 perm/sec)   p_kst 1.597633e-04   p_cons 7.800678e-01   p_joint 6.023669e-04

Joint ci ratio: 8.815885e-02	ci left: 5.571894e-04	ci right 6.088616e-04	k: 1975	n:3390000
Cons ci ratio: 1.130516e-03	ci left: 7.796168e-01	ci right 7.804989e-01	k: 2644397	n:3390000
KS ci ratio: 1.682098e-01	ci left: 1.467044e-04	ci right 1.739255e-04	k: 542	n:3390000
TNXB   3390000 perm   5595 sec   (606 perm/sec)   p_kst 1.598820e-04   p_cons 7.800581e-01   p_joint 5.825959e-04

Joint ci ratio: 8.806978e-02	ci left: 5.567011e-04	ci right 6.082732e-04	k: 1979	n:3400000
Cons ci ratio: 1.128838e-03	ci left: 7.796217e-01	ci right 7.805025e-01	k: 2652212	n:3400000
KS ci ratio: 1.682098e-01	ci left: 1.462729e-04	ci right 1.734139e-04	k: 542	n:3400000
TNXB   3400000 perm   5624 sec   (605 perm/sec)   p_kst 1.594118e-04   p_cons 7.800624e-01   p_joint 5.820588e-04

Joint ci ratio: 8.795880e-02	ci left: 5.565026e-04	ci right 6.079880e-04	k: 1984	n:3410000
Cons ci ratio: 1.127201e-03	ci left: 7.796166e-01	ci right 7.804961e-01	k: 2659993	n:3410000
KS ci ratio: 1.680552e-01	ci left: 1.461249e-04	ci right 1.732110e-04	k: 543	n:3410000
TNXB   3410000 perm   5653 sec   (603 perm/sec)   p_kst 1.592375e-04   p_cons 7.800566e-01   p_joint 5.818182e-04

Joint ci ratio: 8.787034e-02	ci left: 5.560192e-04	ci right 6.074056e-04	k: 1988	n:3420000
Cons ci ratio: 1.125574e-03	ci left: 7.796103e-01	ci right 7.804886e-01	k: 2667770	n:3420000
KS ci ratio: 1.679009e-01	ci left: 1.459777e-04	ci right 1.730092e-04	k: 544	n:3420000
TNXB   3420000 perm   5681 sec   (602 perm/sec)   p_kst 1.590643e-04   p_cons 7.800497e-01   p_joint 5.812865e-04

Joint ci ratio: 8.778214e-02	ci left: 5.555388e-04	ci right 6.068265e-04	k: 1992	n:3430000
Cons ci ratio: 1.123900e-03	ci left: 7.796207e-01	ci right 7.804977e-01	k: 2675604	n:3430000
KS ci ratio: 1.679010e-01	ci left: 1.455521e-04	ci right 1.725048e-04	k: 544	n:3430000
TNXB   3430000 perm   5709 sec   (601 perm/sec)   p_kst 1.586006e-04   p_cons 7.800595e-01   p_joint 5.807580e-04

Joint ci ratio: 8.769420e-02	ci left: 5.550611e-04	ci right 6.062508e-04	k: 1996	n:3440000
Cons ci ratio: 1.122303e-03	ci left: 7.796099e-01	ci right 7.804856e-01	k: 2683365	n:3440000
KS ci ratio: 1.675937e-01	ci left: 1.456860e-04	ci right 1.726091e-04	k: 546	n:3440000
TNXB   3440000 perm   5738 sec   (599 perm/sec)   p_kst 1.587209e-04   p_cons 7.800480e-01   p_joint 5.802326e-04

Joint ci ratio: 8.758463e-02	ci left: 5.548697e-04	ci right 6.059745e-04	k: 2001	n:3450000
Cons ci ratio: 1.120680e-03	ci left: 7.796092e-01	ci right 7.804837e-01	k: 2691161	n:3450000
KS ci ratio: 1.674408e-01	ci left: 1.455414e-04	ci right 1.724108e-04	k: 547	n:3450000
TNXB   3450000 perm   5768 sec   (598 perm/sec)   p_kst 1.585507e-04   p_cons 7.800467e-01   p_joint 5.800000e-04

Joint ci ratio: 8.747548e-02	ci left: 5.546795e-04	ci right 6.056999e-04	k: 2006	n:3460000
Cons ci ratio: 1.119030e-03	ci left: 7.796187e-01	ci right 7.804918e-01	k: 2698992	n:3460000
KS ci ratio: 1.672882e-01	ci left: 1.453977e-04	ci right 1.722136e-04	k: 548	n:3460000
TNXB   3460000 perm   5797 sec   (597 perm/sec)   p_kst 1.583815e-04   p_cons 7.800555e-01   p_joint 5.797688e-04

Joint ci ratio: 8.730163e-02	ci left: 5.553361e-04	ci right 6.063102e-04	k: 2014	n:3470000
Cons ci ratio: 1.117417e-03	ci left: 7.796191e-01	ci right 7.804911e-01	k: 2706792	n:3470000
KS ci ratio: 1.666820e-01	ci left: 1.460832e-04	ci right 1.729182e-04	k: 552	n:3470000
TNXB   3470000 perm   5825 sec   (596 perm/sec)   p_kst 1.590778e-04   p_cons 7.800553e-01   p_joint 5.804035e-04

Joint ci ratio: 8.721513e-02	ci left: 5.548647e-04	ci right 6.057424e-04	k: 2018	n:3480000
Cons ci ratio: 1.115788e-03	ci left: 7.796268e-01	ci right 7.804975e-01	k: 2714617	n:3480000
KS ci ratio: 1.666821e-01	ci left: 1.456635e-04	ci right 1.724213e-04	k: 552	n:3480000
TNXB   3480000 perm   5855 sec   (594 perm/sec)   p_kst 1.586207e-04   p_cons 7.800624e-01   p_joint 5.798851e-04

Joint ci ratio: 8.719360e-02	ci left: 5.535551e-04	ci right 6.042996e-04	k: 2019	n:3490000
Cons ci ratio: 1.114076e-03	ci left: 7.796619e-01	ci right 7.805313e-01	k: 2722538	n:3490000
KS ci ratio: 1.666821e-01	ci left: 1.452461e-04	ci right 1.719272e-04	k: 552	n:3490000
TNXB   3490000 perm   5884 sec   (593 perm/sec)   p_kst 1.581662e-04   p_cons 7.800968e-01   p_joint 5.785100e-04

Joint ci ratio: 8.697852e-02	ci left: 5.547684e-04	ci right 6.054923e-04	k: 2029	n:3500000
Cons ci ratio: 1.112456e-03	ci left: 7.796711e-01	ci right 7.805392e-01	k: 2730369	n:3500000
KS ci ratio: 1.663815e-01	ci left: 1.453787e-04	ci right 1.720312e-04	k: 554	n:3500000
TNXB   3500000 perm   5914 sec   (592 perm/sec)   p_kst 1.582857e-04   p_cons 7.801054e-01   p_joint 5.797143e-04

Joint ci ratio: 8.676502e-02	ci left: 5.559750e-04	ci right 6.066781e-04	k: 2039	n:3510000
Cons ci ratio: 1.110903e-03	ci left: 7.796615e-01	ci right 7.805284e-01	k: 2738134	n:3510000
KS ci ratio: 1.663816e-01	ci left: 1.449645e-04	ci right 1.715411e-04	k: 554	n:3510000
TNXB   3510000 perm   5945 sec   (590 perm/sec)   p_kst 1.578348e-04   p_cons 7.800952e-01   p_joint 5.809117e-04

Joint ci ratio: 8.849652e-02	ci left: 5.324438e-04	ci right 5.820201e-04	k: 1960	n:3520000
Cons ci ratio: 1.109316e-03	ci left: 7.796644e-01	ci right 7.805300e-01	k: 2745943	n:3520000
KS ci ratio: 1.662319e-01	ci left: 1.448250e-04	ci right 1.713497e-04	k: 555	n:3520000
TNXB   3520000 perm   5976 sec   (589 perm/sec)   p_kst 1.576705e-04   p_cons 7.800974e-01   p_joint 5.568182e-04

Joint ci ratio: 8.946032e-02	ci left: 5.193021e-04	ci right 5.682088e-04	k: 1918	n:3530000
Cons ci ratio: 1.107749e-03	ci left: 7.796636e-01	ci right 7.805280e-01	k: 2753739	n:3530000
KS ci ratio: 1.660826e-01	ci left: 1.446862e-04	ci right 1.711593e-04	k: 556	n:3530000
TNXB   3530000 perm   6005 sec   (588 perm/sec)   p_kst 1.575071e-04   p_cons 7.800960e-01   p_joint 5.433428e-04

Joint ci ratio: 8.941378e-02	ci left: 5.183874e-04	ci right 5.671813e-04	k: 1920	n:3540000
Cons ci ratio: 1.106157e-03	ci left: 7.796721e-01	ci right 7.805353e-01	k: 2761568	n:3540000
KS ci ratio: 1.659337e-01	ci left: 1.445482e-04	ci right 1.709700e-04	k: 557	n:3540000
TNXB   3540000 perm   6036 sec   (586 perm/sec)   p_kst 1.573446e-04   p_cons 7.801040e-01   p_joint 5.423729e-04

Joint ci ratio: 8.934407e-02	ci left: 5.177534e-04	ci right 5.664476e-04	k: 1923	n:3550000
Cons ci ratio: 1.104585e-03	ci left: 7.796770e-01	ci right 7.805389e-01	k: 2769384	n:3550000
KS ci ratio: 1.659338e-01	ci left: 1.441410e-04	ci right 1.704884e-04	k: 557	n:3550000
TNXB   3550000 perm   6066 sec   (585 perm/sec)   p_kst 1.569014e-04   p_cons 7.801082e-01   p_joint 5.416901e-04

Joint ci ratio: 8.925136e-02	ci left: 5.173975e-04	ci right 5.660052e-04	k: 1927	n:3560000
Cons ci ratio: 1.102943e-03	ci left: 7.797054e-01	ci right 7.805661e-01	k: 2777284	n:3560000
KS ci ratio: 1.659338e-01	ci left: 1.437361e-04	ci right 1.700095e-04	k: 557	n:3560000
TNXB   3560000 perm   6096 sec   (584 perm/sec)   p_kst 1.564607e-04   p_cons 7.801360e-01   p_joint 5.412921e-04

Joint ci ratio: 8.908976e-02	ci left: 5.178653e-04	ci right 5.664242e-04	k: 1934	n:3570000
Cons ci ratio: 1.101372e-03	ci left: 7.797137e-01	ci right 7.805732e-01	k: 2785113	n:3570000
KS ci ratio: 1.654895e-01	ci left: 1.441390e-04	ci right 1.704085e-04	k: 560	n:3570000
TNXB   3570000 perm   6125 sec   (583 perm/sec)   p_kst 1.568627e-04   p_cons 7.801437e-01   p_joint 5.417367e-04

Joint ci ratio: 8.902081e-02	ci left: 5.172380e-04	ci right 5.656987e-04	k: 1937	n:3580000
Cons ci ratio: 1.099805e-03	ci left: 7.797231e-01	ci right 7.805814e-01	k: 2792946	n:3580000
KS ci ratio: 1.654895e-01	ci left: 1.437364e-04	ci right 1.699325e-04	k: 560	n:3580000
TNXB   3580000 perm   6155 sec   (582 perm/sec)   p_kst 1.564246e-04   p_cons 7.801525e-01   p_joint 5.410615e-04

Joint ci ratio: 8.946073e-02	ci left: 5.106228e-04	ci right 5.587124e-04	k: 1918	n:3590000
Cons ci ratio: 1.098287e-03	ci left: 7.797189e-01	ci right 7.805760e-01	k: 2800730	n:3590000
KS ci ratio: 1.651953e-01	ci left: 1.438701e-04	ci right 1.700393e-04	k: 562	n:3590000
TNXB   3590000 perm   6185 sec   (580 perm/sec)   p_kst 1.565460e-04   p_cons 7.801476e-01   p_joint 5.342618e-04

Joint ci ratio: 8.934441e-02	ci left: 5.105622e-04	ci right 5.585804e-04	k: 1923	n:3600000
Cons ci ratio: 1.096786e-03	ci left: 7.797115e-01	ci right 7.805675e-01	k: 2808503	n:3600000
KS ci ratio: 1.649027e-01	ci left: 1.440030e-04	ci right 1.701454e-04	k: 564	n:3600000
TNXB   3600000 perm   6216 sec   (579 perm/sec)   p_kst 1.566667e-04   p_cons 7.801397e-01   p_joint 5.341667e-04

Joint ci ratio: 8.915921e-02	ci left: 5.113146e-04	ci right 5.592986e-04	k: 1931	n:3610000
Cons ci ratio: 1.095290e-03	ci left: 7.797048e-01	ci right 7.805596e-01	k: 2816278	n:3610000
KS ci ratio: 1.643220e-01	ci left: 1.446665e-04	ci right 1.708277e-04	k: 568	n:3610000
TNXB   3610000 perm   6246 sec   (578 perm/sec)   p_kst 1.573407e-04   p_cons 7.801324e-01   p_joint 5.349030e-04

Joint ci ratio: 8.035953e-02	ci left: 6.305036e-04	ci right 6.835601e-04	k: 2377	n:3620000
Cons ci ratio: 1.093753e-03	ci left: 7.797125e-01	ci right 7.805660e-01	k: 2824105	n:3620000
KS ci ratio: 1.640339e-01	ci left: 1.447967e-04	ci right 1.709310e-04	k: 570	n:3620000
TNXB   3620000 perm   6276 sec   (577 perm/sec)   p_kst 1.574586e-04   p_cons 7.801395e-01   p_joint 6.566298e-04

Joint ci ratio: 8.046124e-02	ci left: 6.271470e-04	ci right 6.799909e-04	k: 2371	n:3630000
Cons ci ratio: 1.092254e-03	ci left: 7.797105e-01	ci right 7.805629e-01	k: 2831897	n:3630000
KS ci ratio: 1.636047e-01	ci left: 1.451904e-04	ci right 1.713204e-04	k: 573	n:3630000
TNXB   3630000 perm   6306 sec   (576 perm/sec)   p_kst 1.578512e-04   p_cons 7.801369e-01   p_joint 6.531680e-04

Joint ci ratio: 8.069997e-02	ci left: 6.216553e-04	ci right 6.741992e-04	k: 2357	n:3640000
Cons ci ratio: 1.090697e-03	ci left: 7.797286e-01	ci right 7.805798e-01	k: 2839762	n:3640000
KS ci ratio: 1.634624e-01	ci left: 1.450550e-04	ci right 1.711357e-04	k: 574	n:3640000
TNXB   3640000 perm   6338 sec   (574 perm/sec)   p_kst 1.576923e-04   p_cons 7.801544e-01   p_joint 6.475275e-04

Joint ci ratio: 8.190811e-02	ci left: 6.014321e-04	ci right 6.530641e-04	k: 2288	n:3650000
Cons ci ratio: 1.089213e-03	ci left: 7.797255e-01	ci right 7.805755e-01	k: 2847550	n:3650000
KS ci ratio: 1.627562e-01	ci left: 1.459715e-04	ci right 1.720926e-04	k: 579	n:3650000
TNXB   3650000 perm   6368 sec   (573 perm/sec)   p_kst 1.586301e-04   p_cons 7.801507e-01   p_joint 6.268493e-04

Joint ci ratio: 8.180097e-02	ci left: 6.013947e-04	ci right 6.529526e-04	k: 2294	n:3660000
Cons ci ratio: 1.087733e-03	ci left: 7.797232e-01	ci right 7.805720e-01	k: 2855341	n:3660000
KS ci ratio: 1.624763e-01	ci left: 1.460969e-04	ci right 1.721910e-04	k: 581	n:3660000
TNXB   3660000 perm   6399 sec   (572 perm/sec)   p_kst 1.587432e-04   p_cons 7.801478e-01   p_joint 6.267760e-04

Joint ci ratio: 8.174760e-02	ci left: 6.005567e-04	ci right 6.520076e-04	k: 2297	n:3670000
Cons ci ratio: 1.086187e-03	ci left: 7.797438e-01	ci right 7.805915e-01	k: 2863216	n:3670000
KS ci ratio: 1.623369e-01	ci left: 1.459602e-04	ci right 1.720054e-04	k: 582	n:3670000
TNXB   3670000 perm   6430 sec   (571 perm/sec)   p_kst 1.585831e-04   p_cons 7.801678e-01   p_joint 6.258856e-04

Joint ci ratio: 8.158795e-02	ci left: 6.013205e-04	ci right 6.527314e-04	k: 2306	n:3680000
Cons ci ratio: 1.084719e-03	ci left: 7.797415e-01	ci right 7.805880e-01	k: 2871007	n:3680000
KS ci ratio: 1.619208e-01	ci left: 1.463457e-04	ci right 1.723862e-04	k: 585	n:3680000
TNXB   3680000 perm   6461 sec   (570 perm/sec)   p_kst 1.589674e-04   p_cons 7.801649e-01   p_joint 6.266304e-04

Joint ci ratio: 8.148207e-02	ci left: 6.012837e-04	ci right 6.526217e-04	k: 2312	n:3690000
Cons ci ratio: 1.083283e-03	ci left: 7.797313e-01	ci right 7.805767e-01	k: 2878769	n:3690000
KS ci ratio: 1.617828e-01	ci left: 1.462091e-04	ci right 1.722010e-04	k: 586	n:3690000
TNXB   3690000 perm   6491 sec   (568 perm/sec)   p_kst 1.588076e-04   p_cons 7.801542e-01   p_joint 6.265583e-04

Joint ci ratio: 8.132397e-02	ci left: 6.020416e-04	ci right 6.533398e-04	k: 2321	n:3700000
Cons ci ratio: 1.081839e-03	ci left: 7.797252e-01	ci right 7.805695e-01	k: 2886546	n:3700000
KS ci ratio: 1.615079e-01	ci left: 1.463327e-04	ci right 1.722980e-04	k: 588	n:3700000
TNXB   3700000 perm   6522 sec   (567 perm/sec)   p_kst 1.589189e-04   p_cons 7.801476e-01   p_joint 6.272973e-04

Joint ci ratio: 8.121911e-02	ci left: 6.020032e-04	ci right 6.532288e-04	k: 2327	n:3710000
Cons ci ratio: 1.080345e-03	ci left: 7.797367e-01	ci right 7.805798e-01	k: 2894388	n:3710000
KS ci ratio: 1.615079e-01	ci left: 1.459382e-04	ci right 1.718336e-04	k: 588	n:3710000
TNXB   3710000 perm   6553 sec   (566 perm/sec)   p_kst 1.584906e-04   p_cons 7.801585e-01   p_joint 6.272237e-04

Joint ci ratio: 8.109727e-02	ci left: 6.022284e-04	ci right 6.533928e-04	k: 2334	n:3720000
Cons ci ratio: 1.078915e-03	ci left: 7.797299e-01	ci right 7.805718e-01	k: 2902162	n:3720000
KS ci ratio: 1.613710e-01	ci left: 1.458039e-04	ci right 1.716514e-04	k: 589	n:3720000
TNXB   3720000 perm   6584 sec   (565 perm/sec)   p_kst 1.583333e-04   p_cons 7.801511e-01   p_joint 6.274194e-04

Joint ci ratio: 8.102792e-02	ci left: 6.016645e-04	ci right 6.527352e-04	k: 2338	n:3730000
Cons ci ratio: 1.077522e-03	ci left: 7.797134e-01	ci right 7.805543e-01	k: 2909900	n:3730000
KS ci ratio: 1.610982e-01	ci left: 1.459275e-04	ci right 1.717490e-04	k: 591	n:3730000
TNXB   3730000 perm   6616 sec   (564 perm/sec)   p_kst 1.584450e-04   p_cons 7.801340e-01   p_joint 6.268097e-04

Joint ci ratio: 8.082080e-02	ci left: 6.031995e-04	ci right 6.542633e-04	k: 2350	n:3740000
Cons ci ratio: 1.076055e-03	ci left: 7.797219e-01	ci right 7.805616e-01	k: 2917731	n:3740000
KS ci ratio: 1.609623e-01	ci left: 1.457940e-04	ci right 1.715679e-04	k: 592	n:3740000
TNXB   3740000 perm   6648 sec   (563 perm/sec)   p_kst 1.582888e-04   p_cons 7.801420e-01   p_joint 6.283422e-04

Joint ci ratio: 8.097611e-02	ci left: 5.992394e-04	ci right 6.500701e-04	k: 2341	n:3750000
Cons ci ratio: 1.074639e-03	ci left: 7.797162e-01	ci right 7.805548e-01	k: 2925509	n:3750000
KS ci ratio: 1.605567e-01	ci left: 1.461730e-04	ci right 1.719425e-04	k: 595	n:3750000
TNXB   3750000 perm   6680 sec   (561 perm/sec)   p_kst 1.586667e-04   p_cons 7.801357e-01   p_joint 6.242667e-04

Joint ci ratio: 8.085536e-02	ci left: 5.994697e-04	ci right 6.502406e-04	k: 2348	n:3760000
Cons ci ratio: 1.073195e-03	ci left: 7.797212e-01	ci right 7.805587e-01	k: 2933327	n:3760000
KS ci ratio: 1.605567e-01	ci left: 1.457842e-04	ci right 1.714853e-04	k: 595	n:3760000
TNXB   3760000 perm   6713 sec   (560 perm/sec)   p_kst 1.582447e-04   p_cons 7.801402e-01   p_joint 6.244681e-04

Joint ci ratio: 8.071800e-02	ci left: 5.999588e-04	ci right 6.506807e-04	k: 2356	n:3770000
Cons ci ratio: 1.071746e-03	ci left: 7.797299e-01	ci right 7.805662e-01	k: 2941159	n:3770000
KS ci ratio: 1.604222e-01	ci left: 1.456521e-04	ci right 1.713063e-04	k: 596	n:3770000
TNXB   3770000 perm   6744 sec   (559 perm/sec)   p_kst 1.580902e-04   p_cons 7.801483e-01   p_joint 6.249337e-04

Joint ci ratio: 8.056431e-02	ci left: 6.007045e-04	ci right 6.513882e-04	k: 2365	n:3780000
Cons ci ratio: 1.070305e-03	ci left: 7.797374e-01	ci right 7.805727e-01	k: 2948987	n:3780000
KS ci ratio: 1.601541e-01	ci left: 1.457747e-04	ci right 1.714034e-04	k: 598	n:3780000
TNXB   3780000 perm   6776 sec   (558 perm/sec)   p_kst 1.582011e-04   p_cons 7.801553e-01   p_joint 6.256614e-04

Joint ci ratio: 8.042843e-02	ci left: 6.011879e-04	ci right 6.518228e-04	k: 2373	n:3790000
Cons ci ratio: 1.068836e-03	ci left: 7.797561e-01	ci right 7.805902e-01	k: 2956857	n:3790000
KS ci ratio: 1.597546e-01	ci left: 1.461500e-04	ci right 1.717744e-04	k: 601	n:3790000
TNXB   3790000 perm   6807 sec   (557 perm/sec)   p_kst 1.585752e-04   p_cons 7.801734e-01   p_joint 6.261214e-04

Joint ci ratio: 8.029324e-02	ci left: 6.016688e-04	ci right 6.522551e-04	k: 2381	n:3800000
Cons ci ratio: 1.067446e-03	ci left: 7.797512e-01	ci right 7.805842e-01	k: 2964638	n:3800000
KS ci ratio: 1.594898e-01	ci left: 1.462706e-04	ci right 1.718696e-04	k: 603	n:3800000
TNXB   3800000 perm   6839 sec   (556 perm/sec)   p_kst 1.586842e-04   p_cons 7.801679e-01   p_joint 6.265789e-04

Joint ci ratio: 8.017551e-02	ci left: 6.018900e-04	ci right 6.524172e-04	k: 2388	n:3810000
Cons ci ratio: 1.066098e-03	ci left: 7.797345e-01	ci right 7.805664e-01	k: 2972374	n:3810000
KS ci ratio: 1.592264e-01	ci left: 1.463907e-04	ci right 1.719644e-04	k: 605	n:3810000
TNXB   3810000 perm   6871 sec   (555 perm/sec)   p_kst 1.587927e-04   p_cons 7.801507e-01   p_joint 6.267717e-04

Joint ci ratio: 8.002489e-02	ci left: 6.026232e-04	ci right 6.531125e-04	k: 2397	n:3820000
Cons ci ratio: 1.064706e-03	ci left: 7.797333e-01	ci right 7.805642e-01	k: 2980169	n:3820000
KS ci ratio: 1.590952e-01	ci left: 1.462589e-04	ci right 1.717864e-04	k: 606	n:3820000
TNXB   3820000 perm   6903 sec   (553 perm/sec)   p_kst 1.586387e-04   p_cons 7.801490e-01   p_joint 6.274869e-04

Joint ci ratio: 7.992496e-02	ci left: 6.025851e-04	ci right 6.530052e-04	k: 2403	n:3830000
Cons ci ratio: 1.063367e-03	ci left: 7.797173e-01	ci right 7.805471e-01	k: 2987907	n:3830000
KS ci ratio: 1.588338e-01	ci left: 1.463784e-04	ci right 1.718808e-04	k: 608	n:3830000
TNXB   3830000 perm   6935 sec   (552 perm/sec)   p_kst 1.587467e-04   p_cons 7.801324e-01   p_joint 6.274151e-04

Joint ci ratio: 7.979229e-02	ci left: 6.030576e-04	ci right 6.534296e-04	k: 2411	n:3840000
Cons ci ratio: 1.061915e-03	ci left: 7.797393e-01	ci right 7.805680e-01	k: 2995791	n:3840000
KS ci ratio: 1.585736e-01	ci left: 1.464974e-04	ci right 1.719747e-04	k: 610	n:3840000
TNXB   3840000 perm   6968 sec   (551 perm/sec)   p_kst 1.588542e-04   p_cons 7.801539e-01   p_joint 6.278646e-04

Joint ci ratio: 7.969323e-02	ci left: 6.030185e-04	ci right 6.533219e-04	k: 2417	n:3850000
Cons ci ratio: 1.060569e-03	ci left: 7.797288e-01	ci right 7.805565e-01	k: 3003550	n:3850000
KS ci ratio: 1.584440e-01	ci left: 1.463663e-04	ci right 1.717981e-04	k: 611	n:3850000
TNXB   3850000 perm   6999 sec   (550 perm/sec)   p_kst 1.587013e-04   p_cons 7.801429e-01   p_joint 6.277922e-04

Joint ci ratio: 7.957812e-02	ci left: 6.032337e-04	ci right 6.534789e-04	k: 2424	n:3860000
Cons ci ratio: 1.059218e-03	ci left: 7.797217e-01	ci right 7.805483e-01	k: 3011322	n:3860000
KS ci ratio: 1.579287e-01	ci left: 1.469824e-04	ci right 1.724303e-04	k: 615	n:3860000
TNXB   3860000 perm   7032 sec   (549 perm/sec)   p_kst 1.593264e-04   p_cons 7.801352e-01   p_joint 6.279793e-04

Joint ci ratio: 7.951259e-02	ci left: 6.026880e-04	ci right 6.528445e-04	k: 2428	n:3870000
Cons ci ratio: 1.057850e-03	ci left: 7.797217e-01	ci right 7.805472e-01	k: 3019121	n:3870000
KS ci ratio: 1.578007e-01	ci left: 1.468507e-04	ci right 1.722533e-04	k: 616	n:3870000
TNXB   3870000 perm   7065 sec   (548 perm/sec)   p_kst 1.591731e-04   p_cons 7.801346e-01   p_joint 6.273902e-04

Joint ci ratio: 7.933311e-02	ci left: 6.039134e-04	ci right 6.540532e-04	k: 2439	n:3880000
Cons ci ratio: 1.056444e-03	ci left: 7.797360e-01	ci right 7.805605e-01	k: 3026976	n:3880000
KS ci ratio: 1.578007e-01	ci left: 1.464723e-04	ci right 1.718093e-04	k: 616	n:3880000
TNXB   3880000 perm   7097 sec   (547 perm/sec)   p_kst 1.587629e-04   p_cons 7.801485e-01   p_joint 6.286082e-04

Joint ci ratio: 7.926819e-02	ci left: 6.033688e-04	ci right 6.534205e-04	k: 2443	n:3890000
Cons ci ratio: 1.055075e-03	ci left: 7.797398e-01	ci right 7.805631e-01	k: 3034790	n:3890000
KS ci ratio: 1.576730e-01	ci left: 1.463426e-04	ci right 1.716349e-04	k: 617	n:3890000
TNXB   3890000 perm   7130 sec   (546 perm/sec)   p_kst 1.586118e-04   p_cons 7.801517e-01   p_joint 6.280206e-04

Joint ci ratio: 7.915491e-02	ci left: 6.035810e-04	ci right 6.535755e-04	k: 2450	n:3900000
Cons ci ratio: 1.053724e-03	ci left: 7.797394e-01	ci right 7.805617e-01	k: 3042588	n:3900000
KS ci ratio: 1.575456e-01	ci left: 1.462137e-04	ci right 1.714613e-04	k: 618	n:3900000
TNXB   3900000 perm   7163 sec   (544 perm/sec)   p_kst 1.584615e-04   p_cons 7.801508e-01   p_joint 6.282051e-04

Joint ci ratio: 7.938215e-02	ci left: 5.985277e-04	ci right 6.482525e-04	k: 2436	n:3910000
Cons ci ratio: 1.052350e-03	ci left: 7.797485e-01	ci right 7.805697e-01	k: 3050423	n:3910000
KS ci ratio: 1.572917e-01	ci left: 1.463311e-04	ci right 1.715544e-04	k: 620	n:3910000
TNXB   3910000 perm   7196 sec   (543 perm/sec)   p_kst 1.585678e-04   p_cons 7.801593e-01   p_joint 6.230179e-04

Joint ci ratio: 7.931711e-02	ci left: 5.980010e-04	ci right 6.476394e-04	k: 2440	n:3920000
Cons ci ratio: 1.051051e-03	ci left: 7.797346e-01	ci right 7.805548e-01	k: 3058168	n:3920000
KS ci ratio: 1.570390e-01	ci left: 1.464480e-04	ci right 1.716470e-04	k: 622	n:3920000
TNXB   3920000 perm   7228 sec   (542 perm/sec)   p_kst 1.586735e-04   p_cons 7.801449e-01   p_joint 6.224490e-04

Joint ci ratio: 7.923601e-02	ci left: 5.977264e-04	ci right 6.472890e-04	k: 2445	n:3930000
Cons ci ratio: 1.049683e-03	ci left: 7.797449e-01	ci right 7.805641e-01	k: 3066008	n:3930000
KS ci ratio: 1.569131e-01	ci left: 1.463198e-04	ci right 1.714747e-04	k: 623	n:3930000
TNXB   3930000 perm   7261 sec   (541 perm/sec)   p_kst 1.585242e-04   p_cons 7.801547e-01   p_joint 6.221374e-04

Joint ci ratio: 7.954581e-02	ci left: 5.914827e-04	ci right 6.407281e-04	k: 2426	n:3940000
Cons ci ratio: 1.048356e-03	ci left: 7.797435e-01	ci right 7.805616e-01	k: 3073802	n:3940000
KS ci ratio: 1.567875e-01	ci left: 1.461923e-04	ci right 1.713033e-04	k: 624	n:3940000
TNXB   3940000 perm   7295 sec   (540 perm/sec)   p_kst 1.583756e-04   p_cons 7.801528e-01   p_joint 6.157360e-04

Joint ci ratio: 7.948036e-02	ci left: 5.909777e-04	ci right 6.401388e-04	k: 2430	n:3950000
Cons ci ratio: 1.047120e-03	ci left: 7.797138e-01	ci right 7.805309e-01	k: 3081484	n:3950000
KS ci ratio: 1.565373e-01	ci left: 1.463086e-04	ci right 1.713958e-04	k: 626	n:3950000
TNXB   3950000 perm   7328 sec   (539 perm/sec)   p_kst 1.584810e-04   p_cons 7.801225e-01   p_joint 6.151899e-04

Joint ci ratio: 8.026055e-02	ci left: 5.778536e-04	ci right 6.264168e-04	k: 2383	n:3960000
Cons ci ratio: 1.045762e-03	ci left: 7.797259e-01	ci right 7.805419e-01	k: 3089331	n:3960000
KS ci ratio: 1.562882e-01	ci left: 1.464244e-04	ci right 1.714877e-04	k: 628	n:3960000
TNXB   3960000 perm   7361 sec   (538 perm/sec)   p_kst 1.585859e-04   p_cons 7.801341e-01   p_joint 6.017677e-04

Joint ci ratio: 8.007597e-02	ci left: 5.791133e-04	ci right 6.276653e-04	k: 2394	n:3970000
Cons ci ratio: 1.044473e-03	ci left: 7.797170e-01	ci right 7.805320e-01	k: 3097095	n:3970000
KS ci ratio: 1.559168e-01	ci left: 1.467818e-04	ci right 1.718409e-04	k: 631	n:3970000
TNXB   3970000 perm   7394 sec   (537 perm/sec)   p_kst 1.589421e-04   p_cons 7.801247e-01   p_joint 6.030227e-04

Joint ci ratio: 7.995920e-02	ci left: 5.793818e-04	ci right 6.278822e-04	k: 2401	n:3980000
Cons ci ratio: 1.043162e-03	ci left: 7.797166e-01	ci right 7.805307e-01	k: 3104893	n:3980000
KS ci ratio: 1.556707e-01	ci left: 1.468959e-04	ci right 1.719313e-04	k: 633	n:3980000
TNXB   3980000 perm   7427 sec   (536 perm/sec)   p_kst 1.590452e-04   p_cons 7.801239e-01   p_joint 6.032663e-04

Joint ci ratio: 7.990934e-02	ci left: 5.786666e-04	ci right 6.270755e-04	k: 2404	n:3990000
Cons ci ratio: 1.041862e-03	ci left: 7.797146e-01	ci right 7.805276e-01	k: 3112684	n:3990000
KS ci ratio: 1.555481e-01	ci left: 1.467686e-04	ci right 1.717607e-04	k: 634	n:3990000
TNXB   3990000 perm   7461 sec   (535 perm/sec)   p_kst 1.588972e-04   p_cons 7.801213e-01   p_joint 6.025063e-04

Joint ci ratio: 7.984299e-02	ci left: 5.781999e-04	ci right 6.265277e-04	k: 2408	n:4000000
Cons ci ratio: 1.040533e-03	ci left: 7.797236e-01	ci right 7.805355e-01	k: 3120519	n:4000000
KS ci ratio: 1.554257e-01	ci left: 1.466420e-04	ci right 1.715911e-04	k: 635	n:4000000
TNXB   4000000 perm   7494 sec   (534 perm/sec)   p_kst 1.587500e-04   p_cons 7.801297e-01   p_joint 6.020000e-04

Joint ci ratio: 7.972723e-02	ci left: 5.784689e-04	ci right 6.267458e-04	k: 2415	n:4010000
Cons ci ratio: 1.039269e-03	ci left: 7.797128e-01	ci right 7.805237e-01	k: 3128275	n:4010000
KS ci ratio: 1.553037e-01	ci left: 1.465159e-04	ci right 1.714222e-04	k: 636	n:4010000
TNXB   4010000 perm   7528 sec   (533 perm/sec)   p_kst 1.586035e-04   p_cons 7.801185e-01   p_joint 6.022444e-04

Joint ci ratio: 7.956270e-02	ci left: 5.794679e-04	ci right 6.277238e-04	k: 2425	n:4020000
Cons ci ratio: 1.037992e-03	ci left: 7.797077e-01	ci right 7.805177e-01	k: 3136054	n:4020000
KS ci ratio: 1.550605e-01	ci left: 1.466297e-04	ci right 1.715126e-04	k: 638	n:4020000
TNXB   4020000 perm   7561 sec   (532 perm/sec)   p_kst 1.587065e-04   p_cons 7.801129e-01   p_joint 6.032338e-04

Joint ci ratio: 7.992621e-02	ci left: 5.726797e-04	ci right 6.205984e-04	k: 2403	n:4030000
Cons ci ratio: 1.036690e-03	ci left: 7.797129e-01	ci right 7.805219e-01	k: 3143874	n:4030000
KS ci ratio: 1.548184e-01	ci left: 1.467429e-04	ci right 1.716025e-04	k: 640	n:4030000
TNXB   4030000 perm   7595 sec   (531 perm/sec)   p_kst 1.588089e-04   p_cons 7.801176e-01   p_joint 5.962779e-04

Joint ci ratio: 7.981009e-02	ci left: 5.729603e-04	ci right 6.208295e-04	k: 2410	n:4040000
Cons ci ratio: 1.035419e-03	ci left: 7.797089e-01	ci right 7.805169e-01	k: 3151657	n:4040000
KS ci ratio: 1.545774e-01	ci left: 1.468555e-04	ci right 1.716920e-04	k: 642	n:4040000
TNXB   4040000 perm   7629 sec   (530 perm/sec)   p_kst 1.589109e-04   p_cons 7.801131e-01   p_joint 5.965347e-04

Joint ci ratio: 7.984329e-02	ci left: 5.710616e-04	ci right 6.187929e-04	k: 2408	n:4050000
Cons ci ratio: 9.847087e-04	ci left: 7.960628e-01	ci right 7.968474e-01	k: 3225644	n:4050000
KS ci ratio: 1.539798e-01	ci left: 1.476798e-04	ci right 1.725502e-04	k: 647	n:4050000
TNXB   4050000 perm   7663 sec   (529 perm/sec)   p_kst 1.597531e-04   p_cons 7.964553e-01   p_joint 5.945679e-04

Joint ci ratio: 7.977710e-02	ci left: 5.706206e-04	ci right 6.182737e-04	k: 2412	n:4060000
Cons ci ratio: 9.834860e-04	ci left: 7.960664e-01	ci right 7.968499e-01	k: 3233621	n:4060000
KS ci ratio: 1.538611e-01	ci left: 1.475529e-04	ci right 1.723810e-04	k: 648	n:4060000
TNXB   4060000 perm   7696 sec   (528 perm/sec)   p_kst 1.596059e-04   p_cons 7.964584e-01   p_joint 5.940887e-04

Joint ci ratio: 7.969459e-02	ci left: 5.704226e-04	ci right 6.180076e-04	k: 2417	n:4070000
Cons ci ratio: 9.823400e-04	ci left: 7.960461e-01	ci right 7.968287e-01	k: 3241501	n:4070000
KS ci ratio: 1.537428e-01	ci left: 1.474266e-04	ci right 1.722126e-04	k: 649	n:4070000
TNXB   4070000 perm   7730 sec   (527 perm/sec)   p_kst 1.594595e-04   p_cons 7.964376e-01   p_joint 5.938575e-04

Joint ci ratio: 7.956306e-02	ci left: 5.709462e-04	ci right 6.184927e-04	k: 2425	n:4080000
Cons ci ratio: 9.811446e-04	ci left: 7.960435e-01	ci right 7.968252e-01	k: 3249453	n:4080000
KS ci ratio: 1.537428e-01	ci left: 1.470653e-04	ci right 1.717905e-04	k: 649	n:4080000
TNXB   4080000 perm   7764 sec   (526 perm/sec)   p_kst 1.590686e-04   p_cons 7.964346e-01   p_joint 5.943627e-04

Joint ci ratio: 7.946485e-02	ci left: 5.709881e-04	ci right 6.184766e-04	k: 2431	n:4090000
Cons ci ratio: 9.799276e-04	ci left: 7.960495e-01	ci right 7.968302e-01	k: 3257440	n:4090000
KS ci ratio: 1.535068e-01	ci left: 1.471759e-04	ci right 1.718783e-04	k: 651	n:4090000
TNXB   4090000 perm   7798 sec   (524 perm/sec)   p_kst 1.591687e-04   p_cons 7.964401e-01   p_joint 5.943765e-04

Joint ci ratio: 7.933445e-02	ci left: 5.715079e-04	ci right 6.189581e-04	k: 2439	n:4100000
Cons ci ratio: 9.787211e-04	ci left: 7.960536e-01	ci right 7.968333e-01	k: 3265419	n:4100000
KS ci ratio: 1.531548e-01	ci left: 1.475206e-04	ci right 1.722188e-04	k: 654	n:4100000
TNXB   4100000 perm   7833 sec   (523 perm/sec)   p_kst 1.595122e-04   p_cons 7.964437e-01   p_joint 5.948780e-04

Joint ci ratio: 7.928576e-02	ci left: 5.708328e-04	ci right 6.181965e-04	k: 2442	n:4110000
Cons ci ratio: 9.774890e-04	ci left: 7.960676e-01	ci right 7.968463e-01	k: 3273439	n:4110000
KS ci ratio: 1.531549e-01	ci left: 1.471616e-04	ci right 1.717998e-04	k: 654	n:4110000
TNXB   4110000 perm   7867 sec   (522 perm/sec)   p_kst 1.591241e-04   p_cons 7.964572e-01   p_joint 5.941606e-04

Joint ci ratio: 7.918857e-02	ci left: 5.708748e-04	ci right 6.181812e-04	k: 2448	n:4120000
Cons ci ratio: 9.763477e-04	ci left: 7.960529e-01	ci right 7.968307e-01	k: 3281341	n:4120000
KS ci ratio: 1.531549e-01	ci left: 1.468044e-04	ci right 1.713828e-04	k: 654	n:4120000
TNXB   4120000 perm   7901 sec   (521 perm/sec)   p_kst 1.587379e-04   p_cons 7.964420e-01   p_joint 5.941748e-04

Joint ci ratio: 7.907563e-02	ci left: 5.711539e-04	ci right 6.184128e-04	k: 2455	n:4130000
Cons ci ratio: 9.751697e-04	ci left: 7.960518e-01	ci right 7.968287e-01	k: 3289299	n:4130000
KS ci ratio: 1.531549e-01	ci left: 1.464490e-04	ci right 1.709678e-04	k: 654	n:4130000
TNXB   4130000 perm   7935 sec   (520 perm/sec)   p_kst 1.583535e-04   p_cons 7.964404e-01   p_joint 5.944310e-04

Joint ci ratio: 7.899527e-02	ci left: 5.709581e-04	ci right 6.181507e-04	k: 2460	n:4140000
Cons ci ratio: 9.740104e-04	ci left: 7.960459e-01	ci right 7.968218e-01	k: 3297237	n:4140000
KS ci ratio: 1.530381e-01	ci left: 1.463275e-04	ci right 1.708057e-04	k: 655	n:4140000
TNXB   4140000 perm   7970 sec   (519 perm/sec)   p_kst 1.582126e-04   p_cons 7.964341e-01   p_joint 5.942029e-04

Joint ci ratio: 7.896323e-02	ci left: 5.700547e-04	ci right 6.171526e-04	k: 2462	n:4150000
Cons ci ratio: 9.728125e-04	ci left: 7.960542e-01	ci right 7.968292e-01	k: 3305234	n:4150000
KS ci ratio: 1.528054e-01	ci left: 1.464384e-04	ci right 1.708944e-04	k: 657	n:4150000
TNXB   4150000 perm   8005 sec   (518 perm/sec)   p_kst 1.583133e-04   p_cons 7.964419e-01   p_joint 5.932530e-04

Joint ci ratio: 7.889921e-02	ci left: 5.696270e-04	ci right 6.166496e-04	k: 2466	n:4160000
Cons ci ratio: 9.715896e-04	ci left: 7.960724e-01	ci right 7.968464e-01	k: 3313272	n:4160000
KS ci ratio: 1.524582e-01	ci left: 1.467800e-04	ci right 1.712323e-04	k: 660	n:4160000
TNXB   4160000 perm   8039 sec   (517 perm/sec)   p_kst 1.586538e-04   p_cons 7.964596e-01   p_joint 5.927885e-04

Joint ci ratio: 7.885130e-02	ci left: 5.689662e-04	ci right 6.159044e-04	k: 2469	n:4170000
Cons ci ratio: 9.704193e-04	ci left: 7.960744e-01	ci right 7.968475e-01	k: 3321243	n:4170000
KS ci ratio: 1.524582e-01	ci left: 1.464280e-04	ci right 1.708217e-04	k: 660	n:4170000
TNXB   4170000 perm   8073 sec   (517 perm/sec)   p_kst 1.582734e-04   p_cons 7.964612e-01   p_joint 5.920863e-04

Joint ci ratio: 7.902763e-02	ci left: 5.650254e-04	ci right 6.117475e-04	k: 2458	n:4180000
Cons ci ratio: 9.692468e-04	ci left: 7.960785e-01	ci right 7.968507e-01	k: 3329223	n:4180000
KS ci ratio: 1.522281e-01	ci left: 1.465380e-04	ci right 1.709097e-04	k: 662	n:4180000
TNXB   4180000 perm   8108 sec   (516 perm/sec)   p_kst 1.583732e-04   p_cons 7.964648e-01   p_joint 5.880383e-04

Joint ci ratio: 7.891538e-02	ci left: 5.653145e-04	ci right 6.119911e-04	k: 2465	n:4190000
Cons ci ratio: 9.681413e-04	ci left: 7.960616e-01	ci right 7.968329e-01	k: 3337115	n:4190000
KS ci ratio: 1.519990e-01	ci left: 1.466474e-04	ci right 1.709973e-04	k: 664	n:4190000
TNXB   4190000 perm   8142 sec   (515 perm/sec)   p_kst 1.584726e-04   p_cons 7.964475e-01   p_joint 5.883055e-04

Joint ci ratio: 7.881955e-02	ci left: 5.653689e-04	ci right 6.119907e-04	k: 2471	n:4200000
Cons ci ratio: 9.669635e-04	ci left: 7.960703e-01	ci right 7.968407e-01	k: 3345114	n:4200000
KS ci ratio: 1.518849e-01	ci left: 1.465273e-04	ci right 1.708373e-04	k: 665	n:4200000
TNXB   4200000 perm   8177 sec   (514 perm/sec)   p_kst 1.583333e-04   p_cons 7.964557e-01   p_joint 5.883333e-04

Joint ci ratio: 7.872407e-02	ci left: 5.654231e-04	ci right 6.119903e-04	k: 2477	n:4210000
Cons ci ratio: 9.657964e-04	ci left: 7.960768e-01	ci right 7.968463e-01	k: 3353104	n:4210000
KS ci ratio: 1.517710e-01	ci left: 1.464077e-04	ci right 1.706781e-04	k: 666	n:4210000
TNXB   4210000 perm   8212 sec   (513 perm/sec)   p_kst 1.581948e-04   p_cons 7.964618e-01   p_joint 5.883610e-04

Joint ci ratio: 7.859728e-02	ci left: 5.659417e-04	ci right 6.124731e-04	k: 2485	n:4220000
Cons ci ratio: 9.646279e-04	ci left: 7.960852e-01	ci right 7.968537e-01	k: 3361102	n:4220000
KS ci ratio: 1.516573e-01	ci left: 1.462888e-04	ci right 1.705196e-04	k: 667	n:4220000
TNXB   4220000 perm   8247 sec   (512 perm/sec)   p_kst 1.580569e-04   p_cons 7.964697e-01   p_joint 5.888626e-04

Joint ci ratio: 7.847110e-02	ci left: 5.664579e-04	ci right 6.129536e-04	k: 2493	n:4230000
Cons ci ratio: 9.634713e-04	ci left: 7.960909e-01	ci right 7.968585e-01	k: 3369089	n:4230000
KS ci ratio: 1.515440e-01	ci left: 1.461704e-04	ci right 1.703618e-04	k: 668	n:4230000
TNXB   4230000 perm   8283 sec   (511 perm/sec)   p_kst 1.579196e-04   p_cons 7.964749e-01   p_joint 5.893617e-04

Joint ci ratio: 7.843969e-02	ci left: 5.655843e-04	ci right 6.119889e-04	k: 2495	n:4240000
Cons ci ratio: 9.623273e-04	ci left: 7.960938e-01	ci right 7.968605e-01	k: 3377064	n:4240000
KS ci ratio: 1.515440e-01	ci left: 1.458256e-04	ci right 1.699600e-04	k: 668	n:4240000
TNXB   4240000 perm   8319 sec   (510 perm/sec)   p_kst 1.575472e-04   p_cons 7.964774e-01   p_joint 5.884434e-04

Joint ci ratio: 7.831427e-02	ci left: 5.660990e-04	ci right 6.124681e-04	k: 2503	n:4250000
Cons ci ratio: 9.611909e-04	ci left: 7.960955e-01	ci right 7.968613e-01	k: 3385034	n:4250000
KS ci ratio: 1.514309e-01	ci left: 1.457089e-04	ci right 1.698043e-04	k: 669	n:4250000
TNXB   4250000 perm   8353 sec   (509 perm/sec)   p_kst 1.574118e-04   p_cons 7.964786e-01   p_joint 5.889412e-04

Joint ci ratio: 7.999411e-02	ci left: 5.408399e-04	ci right 5.861345e-04	k: 2399	n:4260000
Cons ci ratio: 9.601182e-04	ci left: 7.960770e-01	ci right 7.968419e-01	k: 3392918	n:4260000
KS ci ratio: 1.513180e-01	ci left: 1.455927e-04	ci right 1.696493e-04	k: 670	n:4260000
TNXB   4260000 perm   8389 sec   (508 perm/sec)   p_kst 1.572770e-04   p_cons 7.964596e-01   p_joint 5.631455e-04

Joint ci ratio: 7.992755e-02	ci left: 5.404913e-04	ci right 5.857174e-04	k: 2403	n:4270000
Cons ci ratio: 9.589771e-04	ci left: 7.960829e-01	ci right 7.968469e-01	k: 3400906	n:4270000
KS ci ratio: 1.509808e-01	ci left: 1.459277e-04	ci right 1.699812e-04	k: 673	n:4270000
TNXB   4270000 perm   8424 sec   (507 perm/sec)   p_kst 1.576112e-04   p_cons 7.964651e-01   p_joint 5.627635e-04

Joint ci ratio: 7.981142e-02	ci left: 5.408313e-04	ci right 5.860170e-04	k: 2410	n:4280000
Cons ci ratio: 9.579208e-04	ci left: 7.960614e-01	ci right 7.968246e-01	k: 3408777	n:4280000
KS ci ratio: 1.506459e-01	ci left: 1.462613e-04	ci right 1.703114e-04	k: 676	n:4280000
TNXB   4280000 perm   8459 sec   (506 perm/sec)   p_kst 1.579439e-04   p_cons 7.964432e-01   p_joint 5.630841e-04

Joint ci ratio: 7.967932e-02	ci left: 5.413983e-04	ci right 5.865530e-04	k: 2418	n:4290000
Cons ci ratio: 9.567943e-04	ci left: 7.960651e-01	ci right 7.968273e-01	k: 3416755	n:4290000
KS ci ratio: 1.504239e-01	ci left: 1.463690e-04	ci right 1.703981e-04	k: 678	n:4290000
TNXB   4290000 perm   8495 sec   (505 perm/sec)   p_kst 1.580420e-04   p_cons 7.964464e-01   p_joint 5.636364e-04

Joint ci ratio: 7.958068e-02	ci left: 5.415068e-04	ci right 5.866120e-04	k: 2424	n:4300000
Cons ci ratio: 9.556718e-04	ci left: 7.960687e-01	ci right 7.968300e-01	k: 3424733	n:4300000
KS ci ratio: 1.502028e-01	ci left: 1.464762e-04	ci right 1.704844e-04	k: 680	n:4300000
TNXB   4300000 perm   8531 sec   (504 perm/sec)   p_kst 1.581395e-04   p_cons 7.964495e-01   p_joint 5.637209e-04

Joint ci ratio: 7.940075e-02	ci left: 5.427519e-04	ci right 5.878539e-04	k: 2435	n:4310000
Cons ci ratio: 9.545472e-04	ci left: 7.960743e-01	ci right 7.968348e-01	k: 3432720	n:4310000
KS ci ratio: 1.500927e-01	ci left: 1.463596e-04	ci right 1.703296e-04	k: 681	n:4310000
TNXB   4310000 perm   8567 sec   (503 perm/sec)   p_kst 1.580046e-04   p_cons 7.964548e-01   p_joint 5.649652e-04

Joint ci ratio: 7.930314e-02	ci left: 5.428568e-04	ci right 5.879096e-04	k: 2441	n:4320000
Cons ci ratio: 9.534523e-04	ci left: 7.960712e-01	ci right 7.968308e-01	k: 3440669	n:4320000
KS ci ratio: 1.497636e-01	ci left: 1.466892e-04	ci right 1.706558e-04	k: 684	n:4320000
TNXB   4320000 perm   8602 sec   (502 perm/sec)   p_kst 1.583333e-04   p_cons 7.964512e-01   p_joint 5.650463e-04

Joint ci ratio: 7.922209e-02	ci left: 5.427350e-04	ci right 5.877294e-04	k: 2446	n:4330000
Cons ci ratio: 9.523660e-04	ci left: 7.960664e-01	ci right 7.968251e-01	k: 3448611	n:4330000
KS ci ratio: 1.495454e-01	ci left: 1.467951e-04	ci right 1.707409e-04	k: 686	n:4330000
TNXB   4330000 perm   8638 sec   (501 perm/sec)   p_kst 1.584296e-04   p_cons 7.964460e-01   p_joint 5.648961e-04

Joint ci ratio: 7.906067e-02	ci left: 5.437430e-04	ci right 5.887249e-04	k: 2456	n:4340000
Cons ci ratio: 9.513164e-04	ci left: 7.960504e-01	ci right 7.968082e-01	k: 3456504	n:4340000
KS ci ratio: 1.491119e-01	ci left: 1.473441e-04	ci right 1.713035e-04	k: 690	n:4340000
TNXB   4340000 perm   8674 sec   (500 perm/sec)   p_kst 1.589862e-04   p_cons 7.964295e-01   p_joint 5.658986e-04

Joint ci ratio: 7.938466e-02	ci left: 5.379863e-04	ci right 5.826829e-04	k: 2436	n:4350000
Cons ci ratio: 9.502320e-04	ci left: 7.960475e-01	ci right 7.968045e-01	k: 3464454	n:4350000
KS ci ratio: 1.487893e-01	ci left: 1.476693e-04	ci right 1.716251e-04	k: 693	n:4350000
TNXB   4350000 perm   8711 sec   (499 perm/sec)   p_kst 1.593103e-04   p_cons 7.964262e-01   p_joint 5.600000e-04

Joint ci ratio: 7.931960e-02	ci left: 5.376516e-04	ci right 5.822821e-04	k: 2440	n:4360000
Cons ci ratio: 9.491317e-04	ci left: 7.960513e-01	ci right 7.968075e-01	k: 3472433	n:4360000
KS ci ratio: 1.486822e-01	ci left: 1.475514e-04	ci right 1.714693e-04	k: 694	n:4360000
TNXB   4360000 perm   8747 sec   (498 perm/sec)   p_kst 1.591743e-04   p_cons 7.964296e-01   p_joint 5.596330e-04

Joint ci ratio: 7.923849e-02	ci left: 5.375428e-04	ci right 5.821165e-04	k: 2445	n:4370000
Cons ci ratio: 9.480915e-04	ci left: 7.960359e-01	ci right 7.967912e-01	k: 3480328	n:4370000
KS ci ratio: 1.485754e-01	ci left: 1.474341e-04	ci right 1.713143e-04	k: 695	n:4370000
TNXB   4370000 perm   8784 sec   (498 perm/sec)   p_kst 1.590389e-04   p_cons 7.964137e-01   p_joint 5.594966e-04

Joint ci ratio: 7.909309e-02	ci left: 5.383296e-04	ci right 5.828829e-04	k: 2454	n:4380000
Cons ci ratio: 9.470247e-04	ci left: 7.960308e-01	ci right 7.967852e-01	k: 3488268	n:4380000
KS ci ratio: 1.481502e-01	ci left: 1.479768e-04	ci right 1.718703e-04	k: 699	n:4380000
TNXB   4380000 perm   8820 sec   (497 perm/sec)   p_kst 1.595890e-04   p_cons 7.964082e-01   p_joint 5.602740e-04

Joint ci ratio: 7.928726e-02	ci left: 5.344240e-04	ci right 5.787676e-04	k: 2442	n:4390000
Cons ci ratio: 9.459541e-04	ci left: 7.960283e-01	ci right 7.967818e-01	k: 3496219	n:4390000
KS ci ratio: 1.479390e-01	ci left: 1.480785e-04	ci right 1.719512e-04	k: 701	n:4390000
TNXB   4390000 perm   8857 sec   (496 perm/sec)   p_kst 1.596811e-04   p_cons 7.964052e-01   p_joint 5.562642e-04

Joint ci ratio: 7.923865e-02	ci left: 5.338777e-04	ci right 5.781475e-04	k: 2445	n:4400000
Cons ci ratio: 9.448349e-04	ci left: 7.960437e-01	ci right 7.967964e-01	k: 3504249	n:4400000
KS ci ratio: 1.479390e-01	ci left: 1.477419e-04	ci right 1.715604e-04	k: 701	n:4400000
TNXB   4400000 perm   8893 sec   (495 perm/sec)   p_kst 1.593182e-04   p_cons 7.964202e-01   p_joint 5.556818e-04

Joint ci ratio: 7.914163e-02	ci left: 5.340007e-04	ci right 5.782240e-04	k: 2451	n:4410000
Cons ci ratio: 9.437738e-04	ci left: 7.960404e-01	ci right 7.967923e-01	k: 3512197	n:4410000
KS ci ratio: 1.477287e-01	ci left: 1.478436e-04	ci right 1.716416e-04	k: 703	n:4410000
TNXB   4410000 perm   8930 sec   (494 perm/sec)   p_kst 1.594104e-04   p_cons 7.964166e-01   p_joint 5.557823e-04

Joint ci ratio: 7.907717e-02	ci left: 5.336796e-04	ci right 5.778387e-04	k: 2455	n:4420000
Cons ci ratio: 9.427372e-04	ci left: 7.960300e-01	ci right 7.967810e-01	k: 3520113	n:4420000
KS ci ratio: 1.477288e-01	ci left: 1.475092e-04	ci right 1.712533e-04	k: 703	n:4420000
TNXB   4420000 perm   8967 sec   (493 perm/sec)   p_kst 1.590498e-04   p_cons 7.964057e-01   p_joint 5.554299e-04

Joint ci ratio: 7.896471e-02	ci left: 5.340238e-04	ci right 5.781457e-04	k: 2462	n:4430000
Cons ci ratio: 9.416700e-04	ci left: 7.960313e-01	ci right 7.967814e-01	k: 3528081	n:4430000
KS ci ratio: 1.475194e-01	ci left: 1.476110e-04	ci right 1.713349e-04	k: 705	n:4430000
TNXB   4430000 perm   9004 sec   (492 perm/sec)   p_kst 1.591422e-04   p_cons 7.964065e-01   p_joint 5.557562e-04

Joint ci ratio: 7.885273e-02	ci left: 5.343665e-04	ci right 5.784512e-04	k: 2469	n:4440000
Cons ci ratio: 9.406136e-04	ci left: 7.960301e-01	ci right 7.967794e-01	k: 3536038	n:4440000
KS ci ratio: 1.475194e-01	ci left: 1.472785e-04	ci right 1.709490e-04	k: 705	n:4440000
TNXB   4440000 perm   9041 sec   (491 perm/sec)   p_kst 1.587838e-04   p_cons 7.964050e-01   p_joint 5.560811e-04

Joint ci ratio: 7.875712e-02	ci left: 5.344874e-04	ci right 5.785262e-04	k: 2475	n:4450000
Cons ci ratio: 9.395516e-04	ci left: 7.960321e-01	ci right 7.967806e-01	k: 3544009	n:4450000
KS ci ratio: 1.474150e-01	ci left: 1.471640e-04	ci right 1.707978e-04	k: 706	n:4450000
TNXB   4450000 perm   9078 sec   (490 perm/sec)   p_kst 1.586517e-04   p_cons 7.964065e-01   p_joint 5.561798e-04

Joint ci ratio: 7.866187e-02	ci left: 5.346079e-04	ci right 5.786008e-04	k: 2481	n:4460000
Cons ci ratio: 9.384763e-04	ci left: 7.960399e-01	ci right 7.967875e-01	k: 3552006	n:4460000
KS ci ratio: 1.474151e-01	ci left: 1.468340e-04	ci right 1.704149e-04	k: 706	n:4460000
TNXB   4460000 perm   9115 sec   (489 perm/sec)   p_kst 1.582960e-04   p_cons 7.964139e-01   p_joint 5.562780e-04

Joint ci ratio: 7.863023e-02	ci left: 5.338505e-04	ci right 5.777626e-04	k: 2483	n:4470000
Cons ci ratio: 9.374422e-04	ci left: 7.960347e-01	ci right 7.967815e-01	k: 3559945	n:4470000
KS ci ratio: 1.473109e-01	ci left: 1.467210e-04	ci right 1.702656e-04	k: 707	n:4470000
TNXB   4470000 perm   9152 sec   (488 perm/sec)   p_kst 1.581655e-04   p_cons 7.964083e-01   p_joint 5.554810e-04

Joint ci ratio: 7.851965e-02	ci left: 5.341907e-04	ci right 5.780662e-04	k: 2490	n:4480000
Cons ci ratio: 9.364109e-04	ci left: 7.960297e-01	ci right 7.967757e-01	k: 3567885	n:4480000
KS ci ratio: 1.471033e-01	ci left: 1.468235e-04	ci right 1.703484e-04	k: 709	n:4480000
TNXB   4480000 perm   9190 sec   (488 perm/sec)   p_kst 1.582589e-04   p_cons 7.964029e-01   p_joint 5.558036e-04

Joint ci ratio: 7.925530e-02	ci left: 5.229579e-04	ci right 5.663318e-04	k: 2444	n:4490000
Cons ci ratio: 9.353355e-04	ci left: 7.960413e-01	ci right 7.967864e-01	k: 3575899	n:4490000
KS ci ratio: 1.471033e-01	ci left: 1.464965e-04	ci right 1.699690e-04	k: 709	n:4490000
TNXB   4490000 perm   9226 sec   (487 perm/sec)   p_kst 1.579065e-04   p_cons 7.964140e-01   p_joint 5.443207e-04

Joint ci ratio: 7.919056e-02	ci left: 5.226671e-04	ci right 5.659798e-04	k: 2448	n:4500000
Cons ci ratio: 9.342970e-04	ci left: 7.960412e-01	ci right 7.967855e-01	k: 3583861	n:4500000
KS ci ratio: 1.467935e-01	ci left: 1.468131e-04	ci right 1.702825e-04	k: 712	n:4500000
TNXB   4500000 perm   9264 sec   (486 perm/sec)   p_kst 1.582222e-04   p_cons 7.964136e-01   p_joint 5.440000e-04

Joint ci ratio: 7.909373e-02	ci left: 5.228122e-04	ci right 5.660816e-04	k: 2454	n:4510000
Cons ci ratio: 9.332530e-04	ci left: 7.960443e-01	ci right 7.967877e-01	k: 3591837	n:4510000
KS ci ratio: 1.466907e-01	ci left: 1.467011e-04	ci right 1.701348e-04	k: 713	n:4510000
TNXB   4510000 perm   9301 sec   (485 perm/sec)   p_kst 1.580931e-04   p_cons 7.964162e-01   p_joint 5.441242e-04

Joint ci ratio: 7.901331e-02	ci left: 5.227399e-04	ci right 5.659572e-04	k: 2459	n:4520000
Cons ci ratio: 9.322208e-04	ci left: 7.960444e-01	ci right 7.967871e-01	k: 3599800	n:4520000
KS ci ratio: 1.465881e-01	ci left: 1.465897e-04	ci right 1.699877e-04	k: 714	n:4520000
TNXB   4520000 perm   9339 sec   (484 perm/sec)   p_kst 1.579646e-04   p_cons 7.964159e-01   p_joint 5.440265e-04

Joint ci ratio: 7.953261e-02	ci left: 5.146618e-04	ci right 5.575039e-04	k: 2427	n:4530000
Cons ci ratio: 9.311731e-04	ci left: 7.960512e-01	ci right 7.967930e-01	k: 3607793	n:4530000
KS ci ratio: 1.465881e-01	ci left: 1.462661e-04	ci right 1.696125e-04	k: 714	n:4530000
TNXB   4530000 perm   9376 sec   (483 perm/sec)   p_kst 1.576159e-04   p_cons 7.964223e-01   p_joint 5.357616e-04

Joint ci ratio: 7.941820e-02	ci left: 5.150394e-04	ci right 5.578484e-04	k: 2434	n:4540000
Cons ci ratio: 9.301711e-04	ci left: 7.960432e-01	ci right 7.967842e-01	k: 3615719	n:4540000
KS ci ratio: 1.463835e-01	ci left: 1.463683e-04	ci right 1.696955e-04	k: 716	n:4540000
TNXB   4540000 perm   9414 sec   (482 perm/sec)   p_kst 1.577093e-04   p_cons 7.964139e-01   p_joint 5.361233e-04

Joint ci ratio: 7.936934e-02	ci left: 5.145537e-04	ci right 5.572948e-04	k: 2437	n:4550000
Cons ci ratio: 9.291573e-04	ci left: 7.960405e-01	ci right 7.967807e-01	k: 3623669	n:4550000
KS ci ratio: 1.463835e-01	ci left: 1.460466e-04	ci right 1.693226e-04	k: 716	n:4550000
TNXB   4550000 perm   9451 sec   (481 perm/sec)   p_kst 1.573626e-04   p_cons 7.964108e-01   p_joint 5.356044e-04

Joint ci ratio: 7.930432e-02	ci left: 5.142851e-04	ci right 5.569673e-04	k: 2441	n:4560000
Cons ci ratio: 9.281399e-04	ci left: 7.960402e-01	ci right 7.967796e-01	k: 3631630	n:4560000
KS ci ratio: 1.461798e-01	ci left: 1.461489e-04	ci right 1.694059e-04	k: 718	n:4560000
TNXB   4560000 perm   9487 sec   (481 perm/sec)   p_kst 1.574561e-04   p_cons 7.964101e-01   p_joint 5.353070e-04

Joint ci ratio: 7.922326e-02	ci left: 5.142322e-04	ci right 5.568643e-04	k: 2446	n:4570000
Cons ci ratio: 9.271158e-04	ci left: 7.960434e-01	ci right 7.967820e-01	k: 3639607	n:4570000
KS ci ratio: 1.460782e-01	ci left: 1.460399e-04	ci right 1.692620e-04	k: 719	n:4570000
TNXB   4570000 perm   9524 sec   (480 perm/sec)   p_kst 1.573304e-04   p_cons 7.964129e-01   p_joint 5.352298e-04

Joint ci ratio: 7.917477e-02	ci left: 5.137514e-04	ci right 5.563165e-04	k: 2449	n:4580000
Cons ci ratio: 9.261125e-04	ci left: 7.960405e-01	ci right 7.967783e-01	k: 3647556	n:4580000
KS ci ratio: 1.460783e-01	ci left: 1.457210e-04	ci right 1.688924e-04	k: 719	n:4580000
TNXB   4580000 perm   9561 sec   (479 perm/sec)   p_kst 1.569869e-04   p_cons 7.964096e-01   p_joint 5.347162e-04

Joint ci ratio: 7.909410e-02	ci left: 5.136999e-04	ci right 5.562153e-04	k: 2454	n:4590000
Cons ci ratio: 9.251044e-04	ci left: 7.960405e-01	ci right 7.967774e-01	k: 3655518	n:4590000
KS ci ratio: 1.460783e-01	ci left: 1.454036e-04	ci right 1.685245e-04	k: 719	n:4590000
TNXB   4590000 perm   9598 sec   (478 perm/sec)   p_kst 1.566449e-04   p_cons 7.964092e-01   p_joint 5.346405e-04

Joint ci ratio: 8.019663e-02	ci left: 4.983079e-04	ci right 5.401511e-04	k: 2387	n:4600000
Cons ci ratio: 9.241294e-04	ci left: 7.960300e-01	ci right 7.967662e-01	k: 3663432	n:4600000
KS ci ratio: 1.458758e-01	ci left: 1.455064e-04	ci right 1.686088e-04	k: 721	n:4600000
TNXB   4600000 perm   9636 sec   (477 perm/sec)   p_kst 1.567391e-04   p_cons 7.963983e-01   p_joint 5.189130e-04

Joint ci ratio: 8.017988e-02	ci left: 4.974395e-04	ci right 5.392007e-04	k: 2388	n:4610000
Cons ci ratio: 9.231475e-04	ci left: 7.960230e-01	ci right 7.967584e-01	k: 3671362	n:4610000
KS ci ratio: 1.458759e-01	ci left: 1.451907e-04	ci right 1.682430e-04	k: 721	n:4610000
TNXB   4610000 perm   9675 sec   (477 perm/sec)   p_kst 1.563991e-04   p_cons 7.963909e-01   p_joint 5.180043e-04

Joint ci ratio: 8.011285e-02	ci left: 4.972112e-04	ci right 5.389167e-04	k: 2392	n:4620000
Cons ci ratio: 9.221657e-04	ci left: 7.960171e-01	ci right 7.967517e-01	k: 3679297	n:4620000
KS ci ratio: 1.457749e-01	ci left: 1.450850e-04	ci right 1.681032e-04	k: 722	n:4620000
TNXB   4620000 perm   9713 sec   (476 perm/sec)   p_kst 1.562771e-04   p_cons 7.963846e-01   p_joint 5.177489e-04

Joint ci ratio: 8.004599e-02	ci left: 4.969840e-04	ci right 5.386340e-04	k: 2396	n:4630000
Cons ci ratio: 9.211919e-04	ci left: 7.960096e-01	ci right 7.967434e-01	k: 3687224	n:4630000
KS ci ratio: 1.456742e-01	ci left: 1.449798e-04	ci right 1.679640e-04	k: 723	n:4630000
TNXB   4630000 perm   9751 sec   (475 perm/sec)   p_kst 1.561555e-04   p_cons 7.963767e-01   p_joint 5.174946e-04

Joint ci ratio: 7.989610e-02	ci left: 4.978138e-04	ci right 5.394516e-04	k: 2405	n:4640000
Cons ci ratio: 9.201618e-04	ci left: 7.960230e-01	ci right 7.967560e-01	k: 3695248	n:4640000
KS ci ratio: 1.452735e-01	ci left: 1.454980e-04	ci right 1.684954e-04	k: 727	n:4640000
TNXB   4640000 perm   9789 sec   (474 perm/sec)   p_kst 1.566810e-04   p_cons 7.963897e-01   p_joint 5.183190e-04

Joint ci ratio: 7.981321e-02	ci left: 4.977970e-04	ci right 5.393882e-04	k: 2410	n:4650000
Cons ci ratio: 9.191743e-04	ci left: 7.960225e-01	ci right 7.967547e-01	k: 3703208	n:4650000
KS ci ratio: 1.452735e-01	ci left: 1.451851e-04	ci right 1.681331e-04	k: 727	n:4650000
TNXB   4650000 perm   9826 sec   (473 perm/sec)   p_kst 1.563441e-04   p_cons 7.963888e-01   p_joint 5.182796e-04

Joint ci ratio: 8.072283e-02	ci left: 4.853732e-04	ci right 5.264103e-04	k: 2356	n:4660000
Cons ci ratio: 9.182585e-04	ci left: 7.959978e-01	ci right 7.967293e-01	k: 3711055	n:4660000
KS ci ratio: 1.450743e-01	ci left: 1.452871e-04	ci right 1.682170e-04	k: 729	n:4660000
TNXB   4660000 perm   9864 sec   (472 perm/sec)   p_kst 1.564378e-04   p_cons 7.963637e-01   p_joint 5.055794e-04

Joint ci ratio: 8.087751e-02	ci left: 4.824456e-04	ci right 5.233170e-04	k: 2347	n:4670000
Cons ci ratio: 9.172710e-04	ci left: 7.959996e-01	ci right 7.967303e-01	k: 3719025	n:4670000
KS ci ratio: 1.450744e-01	ci left: 1.449760e-04	ci right 1.678568e-04	k: 729	n:4670000
TNXB   4670000 perm   9902 sec   (472 perm/sec)   p_kst 1.561028e-04   p_cons 7.963651e-01   p_joint 5.025696e-04

Joint ci ratio: 8.075720e-02	ci left: 4.828802e-04	ci right 5.237248e-04	k: 2354	n:4680000
Cons ci ratio: 9.162897e-04	ci left: 7.960003e-01	ci right 7.967302e-01	k: 3726990	n:4680000
KS ci ratio: 1.447771e-01	ci left: 1.452840e-04	ci right 1.681624e-04	k: 732	n:4680000
TNXB   4680000 perm   9940 sec   (471 perm/sec)   p_kst 1.564103e-04   p_cons 7.963654e-01   p_joint 5.029915e-04

Joint ci ratio: 8.067161e-02	ci left: 4.828952e-04	ci right 5.236957e-04	k: 2359	n:4690000
Cons ci ratio: 9.153470e-04	ci left: 7.959883e-01	ci right 7.967175e-01	k: 3734896	n:4690000
KS ci ratio: 1.447772e-01	ci left: 1.449743e-04	ci right 1.678039e-04	k: 732	n:4690000
TNXB   4690000 perm   9979 sec   (470 perm/sec)   p_kst 1.560768e-04   p_cons 7.963531e-01   p_joint 5.029851e-04

Joint ci ratio: 8.055222e-02	ci left: 4.833271e-04	ci right 5.241008e-04	k: 2366	n:4700000
Cons ci ratio: 9.144012e-04	ci left: 7.959786e-01	ci right 7.967070e-01	k: 3742812	n:4700000
KS ci ratio: 1.446785e-01	ci left: 1.448709e-04	ci right 1.676673e-04	k: 733	n:4700000
TNXB   4700000 perm   10018 sec   (469 perm/sec)   p_kst 1.559574e-04   p_cons 7.963430e-01   p_joint 5.034043e-04

Joint ci ratio: 8.089492e-02	ci left: 4.781403e-04	ci right 5.186562e-04	k: 2346	n:4710000
Cons ci ratio: 9.134278e-04	ci left: 7.959798e-01	ci right 7.967074e-01	k: 3750779	n:4710000
KS ci ratio: 1.445801e-01	ci left: 1.447679e-04	ci right 1.675313e-04	k: 734	n:4710000
TNXB   4710000 perm   10057 sec   (468 perm/sec)   p_kst 1.558386e-04   p_cons 7.963437e-01   p_joint 4.980892e-04

Joint ci ratio: 8.086050e-02	ci left: 4.775425e-04	ci right 5.179896e-04	k: 2348	n:4720000
Cons ci ratio: 9.124510e-04	ci left: 7.959832e-01	ci right 7.967101e-01	k: 3758757	n:4720000
KS ci ratio: 1.445801e-01	ci left: 1.444612e-04	ci right 1.671764e-04	k: 734	n:4720000
TNXB   4720000 perm   10095 sec   (468 perm/sec)   p_kst 1.555085e-04   p_cons 7.963468e-01   p_joint 4.974576e-04

Joint ci ratio: 8.075742e-02	ci left: 4.777758e-04	ci right 5.181886e-04	k: 2354	n:4730000
Cons ci ratio: 9.114393e-04	ci left: 7.960002e-01	ci right 7.967263e-01	k: 3766799	n:4730000
KS ci ratio: 1.444819e-01	ci left: 1.443596e-04	ci right 1.670420e-04	k: 735	n:4730000
TNXB   4730000 perm   10133 sec   (467 perm/sec)   p_kst 1.553911e-04   p_cons 7.963634e-01   p_joint 4.976744e-04

Joint ci ratio: 8.055239e-02	ci left: 4.792484e-04	ci right 5.196781e-04	k: 2366	n:4740000
Cons ci ratio: 9.104541e-04	ci left: 7.960089e-01	ci right 7.967342e-01	k: 3774802	n:4740000
KS ci ratio: 1.441883e-01	ci left: 1.446651e-04	ci right 1.673453e-04	k: 738	n:4740000
TNXB   4740000 perm   10171 sec   (466 perm/sec)   p_kst 1.556962e-04   p_cons 7.963717e-01   p_joint 4.991561e-04

Joint ci ratio: 8.041658e-02	ci left: 4.798898e-04	ci right 5.203021e-04	k: 2374	n:4750000
Cons ci ratio: 9.094879e-04	ci left: 7.960119e-01	ci right 7.967364e-01	k: 3782778	n:4750000
KS ci ratio: 1.436064e-01	ci left: 1.455782e-04	ci right 1.683016e-04	k: 744	n:4750000
TNXB   4750000 perm   10209 sec   (465 perm/sec)   p_kst 1.566316e-04   p_cons 7.963743e-01   p_joint 4.997895e-04

Joint ci ratio: 8.034896e-02	ci left: 4.797050e-04	ci right 5.200663e-04	k: 2378	n:4760000
Cons ci ratio: 9.085272e-04	ci left: 7.960140e-01	ci right 7.967377e-01	k: 3790750	n:4760000
KS ci ratio: 1.435101e-01	ci left: 1.454749e-04	ci right 1.681657e-04	k: 745	n:4760000
TNXB   4760000 perm   10248 sec   (465 perm/sec)   p_kst 1.565126e-04   p_cons 7.963761e-01   p_joint 4.995798e-04

Joint ci ratio: 8.033211e-02	ci left: 4.789048e-04	ci right 5.191899e-04	k: 2379	n:4770000
Cons ci ratio: 9.075661e-04	ci left: 7.960174e-01	ci right 7.967403e-01	k: 3798728	n:4770000
KS ci ratio: 1.434141e-01	ci left: 1.453720e-04	ci right 1.680303e-04	k: 746	n:4770000
TNXB   4770000 perm   10286 sec   (464 perm/sec)   p_kst 1.563941e-04   p_cons 7.963790e-01   p_joint 4.987421e-04

Joint ci ratio: 8.060368e-02	ci left: 4.746229e-04	ci right 5.146891e-04	k: 2363	n:4780000
Cons ci ratio: 9.066114e-04	ci left: 7.960195e-01	ci right 7.967417e-01	k: 3806700	n:4780000
KS ci ratio: 1.433182e-01	ci left: 1.452696e-04	ci right 1.678955e-04	k: 747	n:4780000
TNXB   4780000 perm   10324 sec   (463 perm/sec)   p_kst 1.562762e-04   p_cons 7.963808e-01   p_joint 4.943515e-04

Joint ci ratio: 8.053558e-02	ci left: 4.744503e-04	ci right 5.144665e-04	k: 2367	n:4790000
Cons ci ratio: 9.056825e-04	ci left: 7.960134e-01	ci right 7.967349e-01	k: 3814633	n:4790000
KS ci ratio: 1.431269e-01	ci left: 1.453689e-04	ci right 1.679774e-04	k: 749	n:4790000
TNXB   4790000 perm   10363 sec   (462 perm/sec)   p_kst 1.563674e-04   p_cons 7.963743e-01   p_joint 4.941545e-04

Joint ci ratio: 8.039986e-02	ci left: 4.750950e-04	ci right 5.150949e-04	k: 2375	n:4800000
Cons ci ratio: 9.047501e-04	ci left: 7.960097e-01	ci right 7.967304e-01	k: 3822577	n:4800000
KS ci ratio: 1.427468e-01	ci left: 1.458696e-04	ci right 1.684906e-04	k: 753	n:4800000
TNXB   4800000 perm   10402 sec   (461 perm/sec)   p_kst 1.568750e-04   p_cons 7.963702e-01   p_joint 4.947917e-04

Joint ci ratio: 8.031540e-02	ci left: 4.751259e-04	ci right 5.150844e-04	k: 2380	n:4810000
Cons ci ratio: 9.038333e-04	ci left: 7.960014e-01	ci right 7.967213e-01	k: 3830499	n:4810000
KS ci ratio: 1.425578e-01	ci left: 1.459673e-04	ci right 1.685709e-04	k: 755	n:4810000
TNXB   4810000 perm   10441 sec   (461 perm/sec)   p_kst 1.569647e-04   p_cons 7.963615e-01   p_joint 4.948025e-04

Joint ci ratio: 8.029857e-02	ci left: 4.743435e-04	ci right 5.142274e-04	k: 2381	n:4820000
Cons ci ratio: 9.028794e-04	ci left: 7.960074e-01	ci right 7.967267e-01	k: 3838490	n:4820000
KS ci ratio: 1.425578e-01	ci left: 1.456645e-04	ci right 1.682212e-04	k: 755	n:4820000
TNXB   4820000 perm   10480 sec   (460 perm/sec)   p_kst 1.566390e-04   p_cons 7.963672e-01   p_joint 4.939834e-04

Joint ci ratio: 8.077499e-02	ci left: 4.676810e-04	ci right 5.072490e-04	k: 2353	n:4830000
Cons ci ratio: 9.019331e-04	ci left: 7.960118e-01	ci right 7.967303e-01	k: 3846473	n:4830000
KS ci ratio: 1.424636e-01	ci left: 1.455625e-04	ci right 1.680873e-04	k: 756	n:4830000
TNXB   4830000 perm   10520 sec   (459 perm/sec)   p_kst 1.565217e-04   p_cons 7.963712e-01   p_joint 4.871636e-04

Joint ci ratio: 8.074073e-02	ci left: 4.671196e-04	ci right 5.066225e-04	k: 2355	n:4840000
Cons ci ratio: 9.010156e-04	ci left: 7.960069e-01	ci right 7.967246e-01	k: 3854411	n:4840000
KS ci ratio: 1.423696e-01	ci left: 1.454610e-04	ci right 1.679540e-04	k: 757	n:4840000
TNXB   4840000 perm   10559 sec   (458 perm/sec)   p_kst 1.564050e-04   p_cons 7.963659e-01   p_joint 4.865702e-04

Joint ci ratio: 8.062103e-02	ci left: 4.675706e-04	ci right 5.070503e-04	k: 2362	n:4850000
Cons ci ratio: 9.001204e-04	ci left: 7.959949e-01	ci right 7.967119e-01	k: 3862315	n:4850000
KS ci ratio: 1.419954e-01	ci left: 1.459565e-04	ci right 1.684618e-04	k: 761	n:4850000
TNXB   4850000 perm   10598 sec   (458 perm/sec)   p_kst 1.569072e-04   p_cons 7.963536e-01   p_joint 4.870103e-04

Joint ci ratio: 8.079229e-02	ci left: 4.645924e-04	ci right 5.039079e-04	k: 2352	n:4860000
Cons ci ratio: 8.991423e-04	ci left: 7.960139e-01	ci right 7.967302e-01	k: 3870369	n:4860000
KS ci ratio: 1.418095e-01	ci left: 1.460531e-04	ci right 1.685413e-04	k: 763	n:4860000
TNXB   4860000 perm   10638 sec   (457 perm/sec)   p_kst 1.569959e-04   p_cons 7.963722e-01   p_joint 4.839506e-04

Joint ci ratio: 8.072371e-02	ci left: 4.644432e-04	ci right 5.037112e-04	k: 2356	n:4870000
Cons ci ratio: 8.981662e-04	ci left: 7.960333e-01	ci right 7.967487e-01	k: 3878425	n:4870000
KS ci ratio: 1.414396e-01	ci left: 1.465455e-04	ci right 1.690456e-04	k: 767	n:4870000
TNXB   4870000 perm   10678 sec   (456 perm/sec)   p_kst 1.574949e-04   p_cons 7.963912e-01   p_joint 4.837782e-04

Joint ci ratio: 8.070662e-02	ci left: 4.636922e-04	ci right 5.028880e-04	k: 2357	n:4880000
Cons ci ratio: 8.972329e-04	ci left: 7.960381e-01	ci right 7.967529e-01	k: 3886411	n:4880000
KS ci ratio: 1.414397e-01	ci left: 1.462452e-04	ci right 1.686992e-04	k: 767	n:4880000
TNXB   4880000 perm   10719 sec   (455 perm/sec)   p_kst 1.571721e-04   p_cons 7.963957e-01   p_joint 4.829918e-04

Joint ci ratio: 8.062119e-02	ci left: 4.637459e-04	ci right 5.029027e-04	k: 2362	n:4890000
Cons ci ratio: 8.963348e-04	ci left: 7.960314e-01	ci right 7.967454e-01	k: 3894340	n:4890000
KS ci ratio: 1.412559e-01	ci left: 1.463406e-04	ci right 1.687777e-04	k: 769	n:4890000
TNXB   4890000 perm   10758 sec   (455 perm/sec)   p_kst 1.572597e-04   p_cons 7.963885e-01   p_joint 4.830266e-04

Joint ci ratio: 8.053603e-02	ci left: 4.637993e-04	ci right 5.029174e-04	k: 2367	n:4900000
Cons ci ratio: 8.954174e-04	ci left: 7.960326e-01	ci right 7.967459e-01	k: 3902308	n:4900000
KS ci ratio: 1.411642e-01	ci left: 1.462388e-04	ci right 1.686445e-04	k: 770	n:4900000
TNXB   4900000 perm   10798 sec   (454 perm/sec)   p_kst 1.571429e-04   p_cons 7.963894e-01   p_joint 4.830612e-04

Joint ci ratio: 8.087850e-02	ci left: 4.588635e-04	ci right 4.977376e-04	k: 2347	n:4910000
Cons ci ratio: 8.945247e-04	ci left: 7.960258e-01	ci right 7.967384e-01	k: 3910237	n:4910000
KS ci ratio: 1.411643e-01	ci left: 1.459410e-04	ci right 1.683011e-04	k: 770	n:4910000
TNXB   4910000 perm   10838 sec   (453 perm/sec)   p_kst 1.568228e-04   p_cons 7.963823e-01   p_joint 4.780041e-04

Joint ci ratio: 8.077535e-02	ci left: 4.591257e-04	ci right 4.979701e-04	k: 2353	n:4920000
Cons ci ratio: 8.936072e-04	ci left: 7.960291e-01	ci right 7.967409e-01	k: 3918215	n:4920000
KS ci ratio: 1.407995e-01	ci left: 1.464287e-04	ci right 1.688007e-04	k: 774	n:4920000
TNXB   4920000 perm   10878 sec   (452 perm/sec)   p_kst 1.573171e-04   p_cons 7.963852e-01   p_joint 4.782520e-04

Joint ci ratio: 8.070682e-02	ci left: 4.589894e-04	ci right 4.977878e-04	k: 2357	n:4930000
Cons ci ratio: 8.927127e-04	ci left: 7.960250e-01	ci right 7.967361e-01	k: 3926157	n:4930000
KS ci ratio: 1.407995e-01	ci left: 1.461317e-04	ci right 1.684583e-04	k: 774	n:4930000
TNXB   4930000 perm   10918 sec   (452 perm/sec)   p_kst 1.569980e-04   p_cons 7.963807e-01   p_joint 4.780933e-04

Joint ci ratio: 8.063846e-02	ci left: 4.588537e-04	ci right 4.976062e-04	k: 2361	n:4940000
Cons ci ratio: 8.918614e-04	ci left: 7.960061e-01	ci right 7.967166e-01	k: 3934026	n:4940000
KS ci ratio: 1.407087e-01	ci left: 1.460312e-04	ci right 1.683268e-04	k: 775	n:4940000
TNXB   4940000 perm   10958 sec   (451 perm/sec)   p_kst 1.568826e-04   p_cons 7.963615e-01   p_joint 4.779352e-04

Joint ci ratio: 8.048523e-02	ci left: 4.597083e-04	ci right 4.984557e-04	k: 2370	n:4950000
Cons ci ratio: 8.909854e-04	ci left: 7.959973e-01	ci right 7.967070e-01	k: 3941944	n:4950000
KS ci ratio: 1.403474e-01	ci left: 1.465158e-04	ci right 1.688232e-04	k: 779	n:4950000
TNXB   4950000 perm   10998 sec   (450 perm/sec)   p_kst 1.573737e-04   p_cons 7.963523e-01   p_joint 4.787879e-04

Joint ci ratio: 8.038358e-02	ci left: 4.599668e-04	ci right 4.986847e-04	k: 2376	n:4960000
Cons ci ratio: 8.900843e-04	ci left: 7.959985e-01	ci right 7.967076e-01	k: 3949912	n:4960000
KS ci ratio: 1.402576e-01	ci left: 1.464150e-04	ci right 1.686915e-04	k: 780	n:4960000
TNXB   4960000 perm   11039 sec   (449 perm/sec)   p_kst 1.572581e-04   p_cons 7.963532e-01   p_joint 4.790323e-04

Joint ci ratio: 8.034981e-02	ci left: 4.594356e-04	ci right 4.980919e-04	k: 2378	n:4970000
Cons ci ratio: 8.891832e-04	ci left: 7.960008e-01	ci right 7.967091e-01	k: 3957885	n:4970000
KS ci ratio: 1.400783e-01	ci left: 1.465087e-04	ci right 1.687686e-04	k: 782	n:4970000
TNXB   4970000 perm   11080 sec   (449 perm/sec)   p_kst 1.573441e-04   p_cons 7.963551e-01   p_joint 4.784708e-04

Joint ci ratio: 8.024866e-02	ci left: 4.596937e-04	ci right 4.983207e-04	k: 2384	n:4980000
Cons ci ratio: 8.883068e-04	ci left: 7.959950e-01	ci right 7.967026e-01	k: 3965818	n:4980000
KS ci ratio: 1.398998e-01	ci left: 1.466020e-04	ci right 1.688454e-04	k: 784	n:4980000
TNXB   4980000 perm   11120 sec   (448 perm/sec)   p_kst 1.574297e-04   p_cons 7.963490e-01   p_joint 4.787149e-04

Joint ci ratio: 8.018146e-02	ci left: 4.595580e-04	ci right 4.981397e-04	k: 2388	n:4990000
Cons ci ratio: 8.874176e-04	ci left: 7.959949e-01	ci right 7.967018e-01	k: 3973779	n:4990000
KS ci ratio: 1.398998e-01	ci left: 1.463082e-04	ci right 1.685070e-04	k: 784	n:4990000
TNXB   4990000 perm   11160 sec   (447 perm/sec)   p_kst 1.571142e-04   p_cons 7.963485e-01   p_joint 4.785571e-04

Joint ci ratio: 8.014794e-02	ci left: 4.590308e-04	ci right 4.975515e-04	k: 2390	n:5000000
Cons ci ratio: 8.865284e-04	ci left: 7.959957e-01	ci right 7.967019e-01	k: 3981745	n:5000000
KS ci ratio: 1.398998e-01	ci left: 1.460156e-04	ci right 1.681700e-04	k: 784	n:5000000
TNXB   5000000 perm   11201 sec   (446 perm/sec)   p_kst 1.568000e-04   p_cons 7.963490e-01   p_joint 4.780000e-04

Outputting figure to mutsig2_images.part000000000179/TNXB.19_14886_5000000_0.0001568_0.79635_0.000478.png
                gene_name: TNXB
               theta_stop: 0.14 
                    nperm: 5000000 
                     p_ks: 0.00016 
        ci_ks_bounds_left: 0.00015 
       ci_ks_bounds_right: 0.00017 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.00048 
     ci_joint_bounds_left: 0.00046 
    ci_joint_bounds_right: 0.00050 

Current progress: 9 percent done.
TNC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.847290e-02	ci left: 8.106001e-01	ci right 8.258141e-01	k: 8183	n:10000
KS ci ratio: 2.187136e-02	ci left: 7.541348e-01	ci right 7.709120e-01	k: 7626	n:10000
TNC   10000 perm   3 sec   (3731 perm/sec)   p_kst 7.626000e-01   p_cons 8.183000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000179/TNC.14_6714_10000_0.7626_0.8183_1.png
                gene_name: TNC
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 12 percent done.
TNNI3K
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.834908e-02	ci left: 1.922969e-01	ci right 2.080782e-01	k: 2001	n:10000
Cons ci ratio: 2.778304e-02	ci left: 6.562561e-01	ci right 6.748474e-01	k: 6656	n:10000
KS ci ratio: 1.033792e-01	ci left: 1.191644e-01	ci right 1.322545e-01	k: 1256	n:10000
TNNI3K   10000 perm   3 sec   (3859 perm/sec)   p_kst 1.256000e-01   p_cons 6.656000e-01   p_joint 2.001000e-01

Joint ci ratio: 6.002700e-02	ci left: 1.704482e-01	ci right 1.810463e-01	k: 3514	n:20000
Cons ci ratio: 2.037703e-02	ci left: 6.424897e-01	ci right 6.557670e-01	k: 12983	n:20000
KS ci ratio: 7.098530e-02	ci left: 1.275838e-01	ci right 1.370234e-01	k: 2645	n:20000
TNNI3K   20000 perm   5 sec   (3998 perm/sec)   p_kst 1.322500e-01   p_cons 6.491500e-01   p_joint 1.757000e-01

Outputting figure to mutsig2_images.part000000000179/TNNI3K.13_2963_20000_0.13225_0.64915_0.1757.png
                gene_name: TNNI3K
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 16 percent done.
TNIK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.569683e-01	ci left: 5.407563e-02	ci right 6.338351e-02	k: 586	n:10000
Cons ci ratio: 5.407281e-02	ci left: 3.350832e-01	ci right 3.538075e-01	k: 3444	n:10000
KS ci ratio: 2.019685e-01	ci left: 3.262466e-02	ci right 4.004861e-02	k: 362	n:10000
TNIK   10000 perm   2 sec   (4363 perm/sec)   p_kst 3.620000e-02   p_cons 3.444000e-01   p_joint 5.860000e-02

Joint ci ratio: 1.029821e-01	ci left: 6.406102e-02	ci right 7.106534e-02	k: 1350	n:20000
Cons ci ratio: 3.858486e-02	ci left: 3.337818e-01	ci right 3.469646e-01	k: 6807	n:20000
KS ci ratio: 1.410125e-01	ci left: 3.457132e-02	ci right 3.986432e-02	k: 743	n:20000
TNIK   20000 perm   5 sec   (4013 perm/sec)   p_kst 3.715000e-02   p_cons 3.403500e-01   p_joint 6.750000e-02

Joint ci ratio: 9.185370e-02	ci left: 5.459849e-02	ci right 5.988766e-02	k: 1716	n:30000
Cons ci ratio: 3.160052e-02	ci left: 3.336425e-01	ci right 3.443886e-01	k: 10170	n:30000
KS ci ratio: 1.149767e-01	ci left: 3.515152e-02	ci right 3.947201e-02	k: 1118	n:30000
TNIK   30000 perm   8 sec   (3868 perm/sec)   p_kst 3.726667e-02   p_cons 3.390000e-01   p_joint 5.720000e-02

Joint ci ratio: 8.258217e-02	ci left: 5.111865e-02	ci right 5.554648e-02	k: 2132	n:40000
Cons ci ratio: 2.730641e-02	ci left: 3.353570e-01	ci right 3.446662e-01	k: 13600	n:40000
KS ci ratio: 1.008437e-01	ci left: 3.456149e-02	ci right 3.825621e-02	k: 1455	n:40000
TNIK   40000 perm   11 sec   (3776 perm/sec)   p_kst 3.637500e-02   p_cons 3.400000e-01   p_joint 5.330000e-02

Joint ci ratio: 7.699954e-02	ci left: 4.737933e-02	ci right 5.119322e-02	k: 2463	n:50000
Cons ci ratio: 2.447401e-02	ci left: 3.349300e-01	ci right 3.432487e-01	k: 16954	n:50000
KS ci ratio: 9.001805e-02	ci left: 3.489277e-02	ci right 3.820132e-02	k: 1826	n:50000
TNIK   50000 perm   14 sec   (3697 perm/sec)   p_kst 3.652000e-02   p_cons 3.390800e-01   p_joint 4.926000e-02

Outputting figure to mutsig2_images.part000000000179/TNIK.11_4215_50000_0.03652_0.33908_0.04926.png
                gene_name: TNIK
               theta_stop: 0.090 
                    nperm: 50000 
                     p_ks: 0.037 
        ci_ks_bounds_left: 0.035 
       ci_ks_bounds_right: 0.038 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.049 
     ci_joint_bounds_left: 0.047 
    ci_joint_bounds_right: 0.051 

Current progress: 19 percent done.
TNKS1BP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.879644e-02	ci left: 4.952504e-01	ci right 5.149466e-01	k: 5051	n:10000
Cons ci ratio: 4.990243e-02	ci left: 3.719650e-01	ci right 3.911040e-01	k: 3815	n:10000
KS ci ratio: 5.699905e-02	ci left: 3.118529e-01	ci right 3.302514e-01	k: 3210	n:10000
TNKS1BP1   10000 perm   3 sec   (3758 perm/sec)   p_kst 3.210000e-01   p_cons 3.815000e-01   p_joint 5.051000e-01

Outputting figure to mutsig2_images.part000000000179/TNKS1BP1.9_5230_10000_0.321_0.3815_0.5051.png
                gene_name: TNKS1BP1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.51 

Current progress: 22 percent done.
TNRC18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.964204e-01	ci left: 3.452820e-02	ci right 4.214376e-02	k: 382	n:10000
Cons ci ratio: 4.698613e-02	ci left: 4.006365e-01	ci right 4.200158e-01	k: 4103	n:10000
KS ci ratio: 3.083799e-01	ci left: 1.344771e-02	ci right 1.844006e-02	k: 158	n:10000
TNRC18   10000 perm   3 sec   (3419 perm/sec)   p_kst 1.580000e-02   p_cons 4.103000e-01   p_joint 3.820000e-02

Joint ci ratio: 1.911204e-01	ci left: 1.862872e-02	ci right 2.261236e-02	k: 411	n:20000
Cons ci ratio: 3.326511e-02	ci left: 4.029228e-01	ci right 4.166034e-01	k: 8195	n:20000
KS ci ratio: 2.231068e-01	ci left: 1.350289e-02	ci right 1.694016e-02	k: 303	n:20000
TNRC18   20000 perm   6 sec   (3279 perm/sec)   p_kst 1.515000e-02   p_cons 4.097500e-01   p_joint 2.055000e-02

Joint ci ratio: 1.435090e-01	ci left: 2.252279e-02	ci right 2.603684e-02	k: 727	n:30000
Cons ci ratio: 2.640955e-02	ci left: 4.177998e-01	ci right 4.290150e-01	k: 12702	n:30000
KS ci ratio: 1.825744e-01	ci left: 1.375047e-02	ci right 1.654458e-02	k: 453	n:30000
TNRC18   30000 perm   10 sec   (3152 perm/sec)   p_kst 1.510000e-02   p_cons 4.234000e-01   p_joint 2.423333e-02

Joint ci ratio: 1.383498e-01	ci left: 1.831230e-02	ci right 2.105806e-02	k: 786	n:40000
Cons ci ratio: 2.300570e-02	ci left: 4.157058e-01	ci right 4.254058e-01	k: 16822	n:40000
KS ci ratio: 1.580264e-01	ci left: 1.395173e-02	ci right 1.636941e-02	k: 605	n:40000
TNRC18   40000 perm   13 sec   (3114 perm/sec)   p_kst 1.512500e-02   p_cons 4.205500e-01   p_joint 1.965000e-02

Joint ci ratio: 9.794653e-02	ci left: 2.951763e-02	ci right 3.257713e-02	k: 1551	n:50000
Cons ci ratio: 2.052611e-02	ci left: 4.174260e-01	ci right 4.261031e-01	k: 21088	n:50000
KS ci ratio: 1.419631e-01	ci left: 1.395279e-02	ci right 1.610405e-02	k: 750	n:50000
TNRC18   50000 perm   16 sec   (3082 perm/sec)   p_kst 1.500000e-02   p_cons 4.217600e-01   p_joint 3.102000e-02

Joint ci ratio: 7.874179e-02	ci left: 3.810259e-02	ci right 4.124214e-02	k: 2379	n:60000
Cons ci ratio: 1.876190e-02	ci left: 4.171782e-01	ci right 4.250961e-01	k: 25268	n:60000
KS ci ratio: 1.290285e-01	ci left: 1.417165e-02	ci right 1.614232e-02	k: 908	n:60000
TNRC18   60000 perm   20 sec   (3045 perm/sec)   p_kst 1.513333e-02   p_cons 4.211333e-01   p_joint 3.965000e-02

Joint ci ratio: 8.431006e-02	ci left: 2.869269e-02	ci right 3.123219e-02	k: 2096	n:70000
Cons ci ratio: 1.734598e-02	ci left: 4.181520e-01	ci right 4.254830e-01	k: 29527	n:70000
KS ci ratio: 1.185245e-01	ci left: 1.447305e-02	ci right 1.631030e-02	k: 1076	n:70000
TNRC18   70000 perm   23 sec   (3012 perm/sec)   p_kst 1.537143e-02   p_cons 4.218143e-01   p_joint 2.994286e-02

Joint ci ratio: 8.294186e-02	ci left: 2.603473e-02	ci right 2.829973e-02	k: 2172	n:80000
Cons ci ratio: 1.623660e-02	ci left: 4.180624e-01	ci right 4.249183e-01	k: 33719	n:80000
KS ci ratio: 1.110465e-01	ci left: 1.448512e-02	ci right 1.620028e-02	k: 1226	n:80000
TNRC18   80000 perm   27 sec   (2979 perm/sec)   p_kst 1.532500e-02   p_cons 4.214875e-01   p_joint 2.715000e-02

Joint ci ratio: 6.934409e-02	ci left: 3.309859e-02	ci right 3.548711e-02	k: 3085	n:90000
Cons ci ratio: 1.528919e-02	ci left: 4.188592e-01	ci right 4.253236e-01	k: 37988	n:90000
KS ci ratio: 1.047102e-01	ci left: 1.452984e-02	ci right 1.614607e-02	k: 1379	n:90000
TNRC18   90000 perm   31 sec   (2951 perm/sec)   p_kst 1.532222e-02   p_cons 4.220889e-01   p_joint 3.427778e-02

Joint ci ratio: 6.241328e-02	ci left: 3.676429e-02	ci right 3.914260e-02	k: 3794	n:100000
Cons ci ratio: 1.449182e-02	ci left: 4.194557e-01	ci right 4.255888e-01	k: 42252	n:100000
KS ci ratio: 9.964527e-02	ci left: 1.448004e-02	ci right 1.600826e-02	k: 1523	n:100000
TNRC18   100000 perm   34 sec   (2922 perm/sec)   p_kst 1.523000e-02   p_cons 4.225200e-01   p_joint 3.794000e-02

Outputting figure to mutsig2_images.part000000000179/TNRC18.8_9023_100000_0.01523_0.42252_0.03794.png
                gene_name: TNRC18
               theta_stop: 0.100 
                    nperm: 100000 
                     p_ks: 0.015 
        ci_ks_bounds_left: 0.014 
       ci_ks_bounds_right: 0.016 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.038 
     ci_joint_bounds_left: 0.037 
    ci_joint_bounds_right: 0.039 

Current progress: 25 percent done.
TMTC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.606713e-02	ci left: 8.491691e-01	ci right 8.630228e-01	k: 8562	n:10000
KS ci ratio: 9.317333e-03	ci left: 9.420117e-01	ci right 9.509260e-01	k: 9466	n:10000
TMTC1   10000 perm   2 sec   (5151 perm/sec)   p_kst 9.466000e-01   p_cons 8.562000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000179/TMTC1.7_2393_10000_0.9466_0.8562_1.png
                gene_name: TMTC1
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 28 percent done.
TNKS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.072702e-02	ci left: 9.252359e-01	ci right 9.353117e-01	k: 9304	n:10000
Cons ci ratio: 3.576934e-02	ci left: 5.357789e-01	ci right 5.553945e-01	k: 5456	n:10000
KS ci ratio: 5.864176e-03	ci left: 9.751447e-01	ci right 9.809722e-01	k: 9782	n:10000
TNKS   10000 perm   2 sec   (4643 perm/sec)   p_kst 9.782000e-01   p_cons 5.456000e-01   p_joint 9.304000e-01

Outputting figure to mutsig2_images.part000000000179/TNKS.7_4092_10000_0.9782_0.5456_0.9304.png
                gene_name: TNKS
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 31 percent done.
TNRC6B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.892090e-03	ci left: 9.665720e-01	ci right 9.733506e-01	k: 9701	n:10000
KS ci ratio: 1.239972e-02	ci left: 9.032959e-01	ci right 9.146645e-01	k: 9091	n:10000
TNRC6B   10000 perm   2 sec   (4085 perm/sec)   p_kst 9.091000e-01   p_cons 9.701000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000179/TNRC6B.7_5715_10000_0.9091_0.9701_1.png
                gene_name: TNRC6B
               theta_stop: 0.012 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 34 percent done.
TNS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.576527e-02	ci left: 4.133904e-01	ci right 4.328545e-01	k: 4231	n:10000
Cons ci ratio: 3.459494e-02	ci left: 5.523091e-01	ci right 5.718547e-01	k: 5621	n:10000
KS ci ratio: 6.146986e-02	ci left: 2.801280e-01	ci right 2.979950e-01	k: 2890	n:10000
TNS1   10000 perm   2 sec   (4320 perm/sec)   p_kst 2.890000e-01   p_cons 5.621000e-01   p_joint 4.231000e-01

Outputting figure to mutsig2_images.part000000000179/TNS1.6_5320_10000_0.289_0.5621_0.4231.png
                gene_name: TNS1
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 38 percent done.
TNS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.107787e-02	ci left: 6.043762e-01	ci right 6.235573e-01	k: 6140	n:10000
KS ci ratio: 1.735752e-02	ci left: 8.286969e-01	ci right 8.433068e-01	k: 8361	n:10000
TNS3   10000 perm   2 sec   (4556 perm/sec)   p_kst 8.361000e-01   p_cons 6.140000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000179/TNS3.6_4442_10000_0.8361_0.614_1.png
                gene_name: TNS3
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 41 percent done.
TMTC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.371106e-02	ci left: 5.650398e-01	ci right 5.845166e-01	k: 5748	n:10000
Cons ci ratio: 2.368812e-02	ci left: 7.237072e-01	ci right 7.411572e-01	k: 7325	n:10000
KS ci ratio: 4.068814e-02	ci left: 4.714637e-01	ci right 4.911472e-01	k: 4813	n:10000
TMTC3   10000 perm   2 sec   (4656 perm/sec)   p_kst 4.813000e-01   p_cons 7.325000e-01   p_joint 5.748000e-01

Outputting figure to mutsig2_images.part000000000179/TMTC3.5_2797_10000_0.4813_0.7325_0.5748.png
                gene_name: TMTC3
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.58 

Current progress: 44 percent done.
TNFAIP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.143695e-02	ci left: 4.623746e-01	ci right 4.820416e-01	k: 4722	n:10000
Cons ci ratio: 8.667538e-02	ci left: 1.623899e-01	ci right 1.772030e-01	k: 1697	n:10000
KS ci ratio: 2.945480e-02	ci left: 6.295976e-01	ci right 6.485213e-01	k: 6391	n:10000
TNFAIP3   10000 perm   2 sec   (5582 perm/sec)   p_kst 6.391000e-01   p_cons 1.697000e-01   p_joint 4.722000e-01

Outputting figure to mutsig2_images.part000000000179/TNFAIP3.5_2405_10000_0.6391_0.1697_0.4722.png
                gene_name: TNFAIP3
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 47 percent done.
TNPO2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.080366e-02	ci left: 2.845862e-01	ci right 3.025342e-01	k: 2935	n:10000
Cons ci ratio: 2.162892e-01	ci left: 2.835310e-02	ci right 3.532314e-02	k: 317	n:10000
KS ci ratio: 1.868369e-02	ci left: 8.071466e-01	ci right 8.224696e-01	k: 8149	n:10000
TNPO2   10000 perm   2 sec   (5072 perm/sec)   p_kst 8.149000e-01   p_cons 3.170000e-02   p_joint 2.935000e-01

Joint ci ratio: 5.642571e-02	ci left: 1.888857e-01	ci right 1.999033e-01	k: 3887	n:20000
Cons ci ratio: 1.502791e-01	ci left: 3.042282e-02	ci right 3.541419e-02	k: 657	n:20000
KS ci ratio: 1.322192e-02	ci left: 8.091940e-01	ci right 8.200143e-01	k: 16293	n:20000
TNPO2   20000 perm   5 sec   (4411 perm/sec)   p_kst 8.146500e-01   p_cons 3.285000e-02   p_joint 1.943500e-01

Joint ci ratio: 3.809565e-02	ci left: 2.558713e-01	ci right 2.658417e-01	k: 7825	n:30000
Cons ci ratio: 1.240748e-01	ci left: 3.019881e-02	ci right 3.422578e-02	k: 965	n:30000
KS ci ratio: 1.087351e-02	ci left: 8.080028e-01	ci right 8.168699e-01	k: 24374	n:30000
TNPO2   30000 perm   7 sec   (4303 perm/sec)   p_kst 8.124667e-01   p_cons 3.216667e-02   p_joint 2.608333e-01

Joint ci ratio: 3.324540e-02	ci left: 2.536180e-01	ci right 2.622172e-01	k: 10316	n:40000
Cons ci ratio: 1.070238e-01	ci left: 3.071071e-02	ci right 3.420760e-02	k: 1297	n:40000
KS ci ratio: 9.461214e-03	ci left: 8.071535e-01	ci right 8.148513e-01	k: 32441	n:40000
TNPO2   40000 perm   9 sec   (4226 perm/sec)   p_kst 8.110250e-01   p_cons 3.242500e-02   p_joint 2.579000e-01

Joint ci ratio: 2.702942e-02	ci left: 2.920804e-01	ci right 3.001033e-01	k: 14804	n:50000
Cons ci ratio: 9.546707e-02	ci left: 3.106059e-02	ci right 3.419398e-02	k: 1630	n:50000
KS ci ratio: 8.452544e-03	ci left: 8.079229e-01	ci right 8.148009e-01	k: 40569	n:50000
TNPO2   50000 perm   12 sec   (4152 perm/sec)   p_kst 8.113800e-01   p_cons 3.260000e-02   p_joint 2.960800e-01

Outputting figure to mutsig2_images.part000000000179/TNPO2.5_2786_50000_0.81138_0.0326_0.29608.png
                gene_name: TNPO2
               theta_stop: 0.095 
                    nperm: 50000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.033 
      ci_cons_bounds_left: 0.031 
     ci_cons_bounds_right: 0.034 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 50 percent done.
TNRC6A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.121569e-02	ci left: 6.022673e-01	ci right 6.214675e-01	k: 6119	n:10000
KS ci ratio: 2.193778e-02	ci left: 7.530218e-01	ci right 7.698256e-01	k: 7615	n:10000
TNRC6A   10000 perm   2 sec   (4017 perm/sec)   p_kst 7.615000e-01   p_cons 6.119000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000179/TNRC6A.5_5989_10000_0.7615_0.6119_1.png
                gene_name: TNRC6A
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 53 percent done.
TMTC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.734739e-02	ci left: 6.633033e-01	ci right 6.817961e-01	k: 6726	n:10000
Cons ci ratio: 4.042023e-02	ci left: 4.747605e-01	ci right 4.944485e-01	k: 4846	n:10000
KS ci ratio: 4.004989e-02	ci left: 4.793568e-01	ci right 4.990495e-01	k: 4892	n:10000
TMTC2   10000 perm   2 sec   (5277 perm/sec)   p_kst 4.892000e-01   p_cons 4.846000e-01   p_joint 6.726000e-01

Outputting figure to mutsig2_images.part000000000179/TMTC2.4_2559_10000_0.4892_0.4846_0.6726.png
                gene_name: TMTC2
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 56 percent done.
TMTC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.561906e-02	ci left: 2.037281e-01	ci right 2.198401e-01	k: 2117	n:10000
Cons ci ratio: 1.430680e-02	ci left: 8.760270e-01	ci right 8.887493e-01	k: 8825	n:10000
KS ci ratio: 9.683164e-02	ci left: 1.339403e-01	ci right 1.476696e-01	k: 1407	n:10000
TMTC4   10000 perm   2 sec   (5880 perm/sec)   p_kst 1.407000e-01   p_cons 8.825000e-01   p_joint 2.117000e-01

Outputting figure to mutsig2_images.part000000000179/TMTC4.3_2355_10000_0.1407_0.8825_0.2117.png
                gene_name: TMTC4
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 59 percent done.
TNFRSF21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.985807e-02	ci left: 4.817552e-01	ci right 5.014497e-01	k: 4916	n:10000
Cons ci ratio: 7.470260e-02	ci left: 2.077708e-01	ci right 2.239950e-01	k: 2158	n:10000
KS ci ratio: 3.035478e-02	ci left: 6.155265e-01	ci right 6.346006e-01	k: 6251	n:10000
TNFRSF21   10000 perm   2 sec   (5907 perm/sec)   p_kst 6.251000e-01   p_cons 2.158000e-01   p_joint 4.916000e-01

Outputting figure to mutsig2_images.part000000000179/TNFRSF21.3_1992_10000_0.6251_0.2158_0.4916.png
                gene_name: TNFRSF21
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 62 percent done.
TNKS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.095822e-02	ci left: 7.694204e-01	ci right 7.858176e-01	k: 7777	n:10000
KS ci ratio: 2.174454e-02	ci left: 7.562597e-01	ci right 7.729859e-01	k: 7647	n:10000
TNKS2   10000 perm   2 sec   (5346 perm/sec)   p_kst 7.647000e-01   p_cons 7.777000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000179/TNKS2.3_3609_10000_0.7647_0.7777_1.png
                gene_name: TNKS2
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 66 percent done.
TNNT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.503264e-02	ci left: 5.460965e-01	ci right 5.656709e-01	k: 5559	n:10000
KS ci ratio: 1.068561e-02	ci left: 9.257524e-01	ci right 9.357949e-01	k: 9309	n:10000
TNNT3   10000 perm   2 sec   (6616 perm/sec)   p_kst 9.309000e-01   p_cons 5.559000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000179/TNNT3.3_923_10000_0.9309_0.5559_1.png
                gene_name: TNNT3
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 69 percent done.
TMX4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.226904e-02	ci left: 4.524903e-01	ci right 4.721317e-01	k: 4623	n:10000
KS ci ratio: 2.500293e-02	ci left: 7.018032e-01	ci right 7.196739e-01	k: 7108	n:10000
TMX4   10000 perm   1 sec   (6767 perm/sec)   p_kst 7.108000e-01   p_cons 4.623000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000179/TMX4.2_1082_10000_0.7108_0.4623_1.png
                gene_name: TMX4
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
TNFRSF11A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.993328e-03	ci left: 9.926212e-01	ci right 9.956801e-01	k: 9943	n:10000
Cons ci ratio: 2.498469e-02	ci left: 7.021059e-01	ci right 7.199711e-01	k: 7111	n:10000
KS ci ratio: 5.745976e-02	ci left: 3.083805e-01	ci right 3.267259e-01	k: 3175	n:10000
TNFRSF11A   10000 perm   2 sec   (5716 perm/sec)   p_kst 3.175000e-01   p_cons 7.111000e-01   p_joint 9.943000e-01

Outputting figure to mutsig2_images.part000000000179/TNFRSF11A.2_1891_10000_0.3175_0.7111_0.9943.png
                gene_name: TNFRSF11A
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 1.00 

Current progress: 75 percent done.
TNFRSF1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.483445e-02	ci left: 5.489020e-01	ci right 5.684638e-01	k: 5587	n:10000
Cons ci ratio: 5.663503e-02	ci left: 3.146312e-01	ci right 3.330715e-01	k: 3238	n:10000
KS ci ratio: 3.554632e-02	ci left: 5.388838e-01	ci right 5.584878e-01	k: 5487	n:10000
TNFRSF1A   10000 perm   2 sec   (5963 perm/sec)   p_kst 5.487000e-01   p_cons 3.238000e-01   p_joint 5.587000e-01

Outputting figure to mutsig2_images.part000000000179/TNFRSF1A.2_1408_10000_0.5487_0.3238_0.5587.png
                gene_name: TNFRSF1A
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 78 percent done.
TNIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.025385e-02	ci left: 7.811735e-01	ci right 7.972577e-01	k: 7893	n:10000
Cons ci ratio: 2.613838e-02	ci left: 6.830481e-01	ci right 7.012398e-01	k: 6922	n:10000
KS ci ratio: 2.812068e-02	ci left: 6.508212e-01	ci right 6.694854e-01	k: 6602	n:10000
TNIP1   10000 perm   2 sec   (5557 perm/sec)   p_kst 6.602000e-01   p_cons 6.922000e-01   p_joint 7.893000e-01

Outputting figure to mutsig2_images.part000000000179/TNIP1.2_1979_10000_0.6602_0.6922_0.7893.png
                gene_name: TNIP1
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 81 percent done.
TNIP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.374371e-02	ci left: 2.655721e-01	ci right 2.831595e-01	k: 2743	n:10000
Cons ci ratio: 9.114155e-02	ci left: 1.489391e-01	ci right 1.632618e-01	k: 1560	n:10000
KS ci ratio: 1.849152e-02	ci left: 8.102954e-01	ci right 8.255190e-01	k: 8180	n:10000
TNIP3   10000 perm   1 sec   (6672 perm/sec)   p_kst 8.180000e-01   p_cons 1.560000e-01   p_joint 2.743000e-01

Outputting figure to mutsig2_images.part000000000179/TNIP3.2_1022_10000_0.818_0.156_0.2743.png
                gene_name: TNIP3
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 84 percent done.
TNNI2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.838059e-03	ci left: 9.885089e-01	ci right 9.923974e-01	k: 9906	n:10000
Cons ci ratio: 1.935551e-02	ci left: 7.960815e-01	ci right 8.117411e-01	k: 8040	n:10000
KS ci ratio: 3.193658e-02	ci left: 5.913239e-01	ci right 6.106172e-01	k: 6010	n:10000
TNNI2   10000 perm   1 sec   (6982 perm/sec)   p_kst 6.010000e-01   p_cons 8.040000e-01   p_joint 9.906000e-01

Outputting figure to mutsig2_images.part000000000179/TNNI2.2_592_10000_0.601_0.804_0.9906.png
                gene_name: TNNI2
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 88 percent done.
TNNI3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.105821e-02	ci left: 6.046775e-01	ci right 6.238559e-01	k: 6143	n:10000
Cons ci ratio: 1.388992e-02	ci left: 8.821675e-01	ci right 8.946052e-01	k: 8885	n:10000
KS ci ratio: 7.152117e-02	ci left: 2.226698e-01	ci right 2.392872e-01	k: 2309	n:10000
TNNI3   10000 perm   2 sec   (6534 perm/sec)   p_kst 2.309000e-01   p_cons 8.885000e-01   p_joint 6.143000e-01

Outputting figure to mutsig2_images.part000000000179/TNNI3.2_660_10000_0.2309_0.8885_0.6143.png
                gene_name: TNNI3
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 91 percent done.
TNNT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.715155e-02	ci left: 3.989431e-01	ci right 4.183102e-01	k: 4086	n:10000
Cons ci ratio: 6.359997e-02	ci left: 2.664630e-01	ci right 2.840681e-01	k: 2752	n:10000
KS ci ratio: 6.075972e-02	ci left: 2.848834e-01	ci right 3.028368e-01	k: 2938	n:10000
TNNT2   10000 perm   2 sec   (5881 perm/sec)   p_kst 2.938000e-01   p_cons 2.752000e-01   p_joint 4.086000e-01

Outputting figure to mutsig2_images.part000000000179/TNNT2.2_979_10000_0.2938_0.2752_0.4086.png
                gene_name: TNNT2
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 94 percent done.
TNPO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.250553e-02	ci left: 5.827935e-01	ci right 6.021526e-01	k: 5925	n:10000
Cons ci ratio: 6.733862e-02	ci left: 2.445023e-01	ci right 2.616417e-01	k: 2530	n:10000
KS ci ratio: 3.373175e-02	ci left: 5.647390e-01	ci right 5.842175e-01	k: 5745	n:10000
TNPO1   10000 perm   2 sec   (4975 perm/sec)   p_kst 5.745000e-01   p_cons 2.530000e-01   p_joint 5.925000e-01

Outputting figure to mutsig2_images.part000000000179/TNPO1.2_2793_10000_0.5745_0.253_0.5925.png
                gene_name: TNPO1
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 97 percent done.
TNRC6C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.502554e-02	ci left: 5.461967e-01	ci right 5.657707e-01	k: 5560	n:10000
KS ci ratio: 1.198297e-02	ci left: 9.089508e-01	ci right 9.200063e-01	k: 9146	n:10000
TNRC6C   10000 perm   2 sec   (4693 perm/sec)   p_kst 9.146000e-01   p_cons 5.560000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000179/TNRC6C.2_5266_10000_0.9146_0.556_1.png
                gene_name: TNRC6C
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000179
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 179 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1426>
Subject: Job 8004647: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1426>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000180> was used as the working directory.
Started at Sun Nov 11 17:37:13 2012
Results reported at Sun Nov 11 22:16:37 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000180.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000180.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 180  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000180.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  25894.96 sec.
    Max Memory :      4812 MB
    Max Swap   :      7154 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
180
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 180
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 180: processing genes 16195 - 16285
Calculating significance of each gene.
Using projection method.
16195	TOLLIP	5.252245e-01
16196	TOM1	5.043496e-01
16197	TOM1L1	6.661891e-01
16198	TOM1L2	1
16199	TOMM20	1
16200	TOMM20L	2.614122e-01
16201	TOMM22	4.724788e-01
16202	TOMM34	3.787880e-01
16203	TOMM40	5.134367e-01
16204	TOMM40L	4.839504e-01
16205	TOMM5	1
16206	TOMM7	1
16207	TOMM70A	3.906497e-01
16208	TOP1	4.461856e-01
16209	TOP1MT	1
16210	TOP2A	9.813873e-01
16211	TOP2B	1
16212	TOP3A	7.055643e-01
16213	TOP3B	5.106377e-01
16214	TOPBP1	6.174811e-01
16215	TOPORS	1.565224e-01
16216	TOR1A	7.351299e-01
16217	TOR1AIP1	7.543496e-01
16218	TOR1AIP2	2.568456e-01
16219	TOR1B	2.526158e-01
16220	TOR2A	1
16221	TOR3A	1
16222	TOX	7.520625e-01
16223	TOX2	8.482613e-01
16224	TOX3	8.157091e-01
16225	TOX4	7.010262e-01
16226	TP53	2.553513e-15
16227	TP53AIP1	1
16228	TP53BP1	8.786019e-01
16229	TP53BP2	9.758582e-01
16230	TP53I11	1
16231	TP53I13	1
16232	TP53I3	1
16233	TP53INP1	1
16234	TP53INP2	1
16235	TP53RK	2.971820e-01
16236	TP53TG5	1
16237	TP63	7.098073e-01
16238	TP73	1
16239	TPBG	3.300590e-01
16240	TPCN1	6.773761e-01
16241	TPCN2	9.604021e-01
16242	TPD52	6.375205e-01
16243	TPD52L1	1
16244	TPD52L2	2.785529e-01
16245	TPD52L3	1.673070e-01
16246	TPH1	3.835341e-01
16247	TPH2	2.627705e-01
16248	TPI1	1.324875e-01
16249	TPK1	7.439391e-03
16250	TPM1	6.105824e-01
16251	TPM2	1
16252	TPM3	6.396747e-01
16253	TPM4	1
16254	TPMT	1
16255	TPO	5.885258e-03
16256	TPP1	2.951296e-01
16257	TPP2	1
16258	TPPP	1
16259	TPPP2	2.293955e-01
16260	TPPP3	1
16261	TPR	9.989901e-01
16262	TPRA1	5.248456e-01
16263	TPRG1	1
16264	TPRG1L	1
16265	TPRKB	4.669404e-01
16266	TPRN	6.655935e-01
16267	TPRX1	1.473647e-01
16268	TPSAB1	1
16269	TPSB2	1
16270	TPSD1	4.147276e-01
16271	TPSG1	5.474687e-01
16272	TPST1	4.584080e-01
16273	TPST2	7.674211e-01
16274	TPT1	1
16275	TPTE	5.551115e-15
16276	TPTE2	1.406863e-01
16277	TPX2	9.588785e-01
16278	TRA2A	3.307587e-01
16279	TRA2B	3.436598e-01
16280	TRABD	1
16281	TRADD	1
16282	TRAF1	8.362607e-02
16283	TRAF2	1
16284	TRAF3	3.028910e-01
16285	TRAF3IP1	5.084337e-01
Done

Running MutSig 2:
Scatter job 180: processing genes 16195 - 16285
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
TP53
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
KS ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
TP53   10000 perm   10 sec   (986 perm/sec)   p_kst 1.000000e-04   p_cons 1.000000e-04   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 2.771651e+00	ci left: 1.265890e-06	ci right 2.785503e-04	k: 1	n:20000
KS ci ratio: 2.771651e+00	ci left: 1.265890e-06	ci right 2.785503e-04	k: 1	n:20000
TP53   20000 perm   24 sec   (843 perm/sec)   p_kst 5.000000e-05   p_cons 5.000000e-05   p_joint 0

Joint ci ratio: 3.919869e+00	ci left: 0	ci right 1.229551e-04	k: 0	n:30000
Cons ci ratio: 2.771720e+00	ci left: 8.439266e-07	ci right 1.857073e-04	k: 1	n:30000
KS ci ratio: 2.771720e+00	ci left: 8.439266e-07	ci right 1.857073e-04	k: 1	n:30000
TP53   30000 perm   34 sec   (878 perm/sec)   p_kst 3.333333e-05   p_cons 3.333333e-05   p_joint 0

Joint ci ratio: 3.919902e+00	ci left: 0	ci right 9.221773e-05	k: 0	n:40000
Cons ci ratio: 2.771755e+00	ci left: 6.329450e-07	ci right 1.392831e-04	k: 1	n:40000
KS ci ratio: 2.771755e+00	ci left: 6.329450e-07	ci right 1.392831e-04	k: 1	n:40000
TP53   40000 perm   45 sec   (893 perm/sec)   p_kst 2.500000e-05   p_cons 2.500000e-05   p_joint 0

Joint ci ratio: 3.919922e+00	ci left: 0	ci right 7.377487e-05	k: 0	n:50000
Cons ci ratio: 2.771775e+00	ci left: 5.063560e-07	ci right 1.114278e-04	k: 1	n:50000
KS ci ratio: 2.771775e+00	ci left: 5.063560e-07	ci right 1.114278e-04	k: 1	n:50000
TP53   50000 perm   55 sec   (904 perm/sec)   p_kst 2.000000e-05   p_cons 2.000000e-05   p_joint 0

Joint ci ratio: 3.919935e+00	ci left: 0	ci right 6.147943e-05	k: 0	n:60000
Cons ci ratio: 2.771789e+00	ci left: 4.219634e-07	ci right 9.285719e-05	k: 1	n:60000
KS ci ratio: 2.771789e+00	ci left: 4.219634e-07	ci right 9.285719e-05	k: 1	n:60000
TP53   60000 perm   66 sec   (909 perm/sec)   p_kst 1.666667e-05   p_cons 1.666667e-05   p_joint 0

Joint ci ratio: 3.919944e+00	ci left: 0	ci right 5.269689e-05	k: 0	n:70000
Cons ci ratio: 2.771799e+00	ci left: 3.616829e-07	ci right 7.959231e-05	k: 1	n:70000
KS ci ratio: 2.771799e+00	ci left: 3.616829e-07	ci right 7.959231e-05	k: 1	n:70000
TP53   70000 perm   77 sec   (913 perm/sec)   p_kst 1.428571e-05   p_cons 1.428571e-05   p_joint 0

Joint ci ratio: 3.919951e+00	ci left: 0	ci right 4.610993e-05	k: 0	n:80000
Cons ci ratio: 2.771807e+00	ci left: 3.164725e-07	ci right 6.964355e-05	k: 1	n:80000
KS ci ratio: 2.771807e+00	ci left: 3.164725e-07	ci right 6.964355e-05	k: 1	n:80000
TP53   80000 perm   88 sec   (914 perm/sec)   p_kst 1.250000e-05   p_cons 1.250000e-05   p_joint 0

Joint ci ratio: 3.919956e+00	ci left: 0	ci right 4.098671e-05	k: 0	n:90000
Cons ci ratio: 2.771812e+00	ci left: 2.813089e-07	ci right 6.190558e-05	k: 1	n:90000
KS ci ratio: 2.771812e+00	ci left: 2.813089e-07	ci right 6.190558e-05	k: 1	n:90000
TP53   90000 perm   98 sec   (915 perm/sec)   p_kst 1.111111e-05   p_cons 1.111111e-05   p_joint 0

Joint ci ratio: 3.919961e+00	ci left: 0	ci right 3.688811e-05	k: 0	n:100000
Cons ci ratio: 2.771817e+00	ci left: 2.531780e-07	ci right 5.571516e-05	k: 1	n:100000
KS ci ratio: 2.771817e+00	ci left: 2.531780e-07	ci right 5.571516e-05	k: 1	n:100000
TP53   100000 perm   110 sec   (913 perm/sec)   p_kst 1.000000e-05   p_cons 1.000000e-05   p_joint 0

Joint ci ratio: 3.919964e+00	ci left: 0	ci right 3.353471e-05	k: 0	n:110000
Cons ci ratio: 2.771821e+00	ci left: 2.301619e-07	ci right 5.065025e-05	k: 1	n:110000
KS ci ratio: 2.771821e+00	ci left: 2.301619e-07	ci right 5.065025e-05	k: 1	n:110000
TP53   110000 perm   121 sec   (912 perm/sec)   p_kst 9.090909e-06   p_cons 9.090909e-06   p_joint 0

Joint ci ratio: 3.919967e+00	ci left: 0	ci right 3.074019e-05	k: 0	n:120000
Cons ci ratio: 2.771824e+00	ci left: 2.109817e-07	ci right 4.642948e-05	k: 1	n:120000
KS ci ratio: 2.771824e+00	ci left: 2.109817e-07	ci right 4.642948e-05	k: 1	n:120000
TP53   120000 perm   132 sec   (910 perm/sec)   p_kst 8.333333e-06   p_cons 8.333333e-06   p_joint 0

Joint ci ratio: 3.919970e+00	ci left: 0	ci right 2.837559e-05	k: 0	n:130000
Cons ci ratio: 2.771827e+00	ci left: 1.947524e-07	ci right 4.285804e-05	k: 1	n:130000
KS ci ratio: 2.771827e+00	ci left: 1.947524e-07	ci right 4.285804e-05	k: 1	n:130000
TP53   130000 perm   143 sec   (908 perm/sec)   p_kst 7.692308e-06   p_cons 7.692308e-06   p_joint 0

Joint ci ratio: 3.919972e+00	ci left: 0	ci right 2.634879e-05	k: 0	n:140000
Cons ci ratio: 2.771829e+00	ci left: 1.808415e-07	ci right 3.979680e-05	k: 1	n:140000
KS ci ratio: 2.771829e+00	ci left: 1.808415e-07	ci right 3.979680e-05	k: 1	n:140000
TP53   140000 perm   155 sec   (905 perm/sec)   p_kst 7.142857e-06   p_cons 7.142857e-06   p_joint 0

Joint ci ratio: 3.919974e+00	ci left: 0	ci right 2.459223e-05	k: 0	n:150000
Cons ci ratio: 2.771831e+00	ci left: 1.687854e-07	ci right 3.714372e-05	k: 1	n:150000
KS ci ratio: 2.771831e+00	ci left: 1.687854e-07	ci right 3.714372e-05	k: 1	n:150000
TP53   150000 perm   166 sec   (903 perm/sec)   p_kst 6.666667e-06   p_cons 6.666667e-06   p_joint 0

Joint ci ratio: 3.919976e+00	ci left: 0	ci right 2.305523e-05	k: 0	n:160000
Cons ci ratio: 2.771833e+00	ci left: 1.582363e-07	ci right 3.482227e-05	k: 1	n:160000
KS ci ratio: 2.771833e+00	ci left: 1.582363e-07	ci right 3.482227e-05	k: 1	n:160000
TP53   160000 perm   178 sec   (900 perm/sec)   p_kst 6.250000e-06   p_cons 6.250000e-06   p_joint 0

Joint ci ratio: 3.919977e+00	ci left: 0	ci right 2.169906e-05	k: 0	n:170000
Cons ci ratio: 2.771834e+00	ci left: 1.489283e-07	ci right 3.277393e-05	k: 1	n:170000
KS ci ratio: 2.771834e+00	ci left: 1.489283e-07	ci right 3.277393e-05	k: 1	n:170000
TP53   170000 perm   189 sec   (897 perm/sec)   p_kst 5.882353e-06   p_cons 5.882353e-06   p_joint 0

Joint ci ratio: 3.919978e+00	ci left: 0	ci right 2.049356e-05	k: 0	n:180000
Cons ci ratio: 2.771835e+00	ci left: 1.406545e-07	ci right 3.095318e-05	k: 1	n:180000
KS ci ratio: 2.771835e+00	ci left: 1.406545e-07	ci right 3.095318e-05	k: 1	n:180000
TP53   180000 perm   201 sec   (895 perm/sec)   p_kst 5.555556e-06   p_cons 5.555556e-06   p_joint 0

Joint ci ratio: 3.919979e+00	ci left: 0	ci right 1.941497e-05	k: 0	n:190000
Cons ci ratio: 2.771837e+00	ci left: 1.332516e-07	ci right 2.932409e-05	k: 1	n:190000
KS ci ratio: 2.771837e+00	ci left: 1.332516e-07	ci right 2.932409e-05	k: 1	n:190000
TP53   190000 perm   213 sec   (892 perm/sec)   p_kst 5.263158e-06   p_cons 5.263158e-06   p_joint 0

Joint ci ratio: 3.919980e+00	ci left: 0	ci right 1.844423e-05	k: 0	n:200000
Cons ci ratio: 2.771838e+00	ci left: 1.265890e-07	ci right 2.785790e-05	k: 1	n:200000
KS ci ratio: 2.771838e+00	ci left: 1.265890e-07	ci right 2.785790e-05	k: 1	n:200000
TP53   200000 perm   225 sec   (889 perm/sec)   p_kst 5.000000e-06   p_cons 5.000000e-06   p_joint 0

Joint ci ratio: 3.919981e+00	ci left: 0	ci right 1.756594e-05	k: 0	n:210000
Cons ci ratio: 2.771839e+00	ci left: 1.205610e-07	ci right 2.653135e-05	k: 1	n:210000
KS ci ratio: 2.771839e+00	ci left: 1.205610e-07	ci right 2.653135e-05	k: 1	n:210000
TP53   210000 perm   237 sec   (886 perm/sec)   p_kst 4.761905e-06   p_cons 4.761905e-06   p_joint 0

Joint ci ratio: 3.919982e+00	ci left: 0	ci right 1.676749e-05	k: 0	n:220000
Cons ci ratio: 2.771840e+00	ci left: 1.150809e-07	ci right 2.532539e-05	k: 1	n:220000
KS ci ratio: 2.771840e+00	ci left: 1.150809e-07	ci right 2.532539e-05	k: 1	n:220000
TP53   220000 perm   249 sec   (883 perm/sec)   p_kst 4.545455e-06   p_cons 4.545455e-06   p_joint 0

Joint ci ratio: 3.919983e+00	ci left: 0	ci right 1.603848e-05	k: 0	n:230000
Cons ci ratio: 2.771841e+00	ci left: 1.100774e-07	ci right 2.422430e-05	k: 1	n:230000
KS ci ratio: 2.771841e+00	ci left: 1.100774e-07	ci right 2.422430e-05	k: 1	n:230000
TP53   230000 perm   261 sec   (881 perm/sec)   p_kst 4.347826e-06   p_cons 4.347826e-06   p_joint 0

Joint ci ratio: 3.919984e+00	ci left: 0	ci right 1.537021e-05	k: 0	n:240000
Cons ci ratio: 2.771841e+00	ci left: 1.054909e-07	ci right 2.321496e-05	k: 1	n:240000
KS ci ratio: 2.771841e+00	ci left: 1.054909e-07	ci right 2.321496e-05	k: 1	n:240000
TP53   240000 perm   273 sec   (878 perm/sec)   p_kst 4.166667e-06   p_cons 4.166667e-06   p_joint 0

Joint ci ratio: 3.919984e+00	ci left: 0	ci right 1.475541e-05	k: 0	n:250000
Cons ci ratio: 2.771842e+00	ci left: 1.012712e-07	ci right 2.228637e-05	k: 1	n:250000
KS ci ratio: 2.771842e+00	ci left: 1.012712e-07	ci right 2.228637e-05	k: 1	n:250000
TP53   250000 perm   286 sec   (875 perm/sec)   p_kst 4.000000e-06   p_cons 4.000000e-06   p_joint 0

Joint ci ratio: 3.919985e+00	ci left: 0	ci right 1.418790e-05	k: 0	n:260000
Cons ci ratio: 2.771843e+00	ci left: 9.737618e-08	ci right 2.142921e-05	k: 1	n:260000
KS ci ratio: 2.771843e+00	ci left: 9.737618e-08	ci right 2.142921e-05	k: 1	n:260000
TP53   260000 perm   298 sec   (872 perm/sec)   p_kst 3.846154e-06   p_cons 3.846154e-06   p_joint 0

Joint ci ratio: 3.919985e+00	ci left: 0	ci right 1.366242e-05	k: 0	n:270000
Cons ci ratio: 2.771843e+00	ci left: 9.376965e-08	ci right 2.063554e-05	k: 1	n:270000
KS ci ratio: 2.771843e+00	ci left: 9.376965e-08	ci right 2.063554e-05	k: 1	n:270000
TP53   270000 perm   311 sec   (869 perm/sec)   p_kst 3.703704e-06   p_cons 3.703704e-06   p_joint 0

Joint ci ratio: 3.919986e+00	ci left: 0	ci right 1.317448e-05	k: 0	n:280000
Cons ci ratio: 2.771844e+00	ci left: 9.042074e-08	ci right 1.989856e-05	k: 1	n:280000
KS ci ratio: 2.771844e+00	ci left: 9.042074e-08	ci right 1.989856e-05	k: 1	n:280000
TP53   280000 perm   323 sec   (866 perm/sec)   p_kst 3.571429e-06   p_cons 3.571429e-06   p_joint 0

Joint ci ratio: 3.919986e+00	ci left: 0	ci right 1.272019e-05	k: 0	n:290000
Cons ci ratio: 2.771844e+00	ci left: 8.730278e-08	ci right 1.921241e-05	k: 1	n:290000
KS ci ratio: 2.771844e+00	ci left: 8.730278e-08	ci right 1.921241e-05	k: 1	n:290000
TP53   290000 perm   336 sec   (864 perm/sec)   p_kst 3.448276e-06   p_cons 3.448276e-06   p_joint 0

Joint ci ratio: 3.919987e+00	ci left: 0	ci right 1.229619e-05	k: 0	n:300000
Cons ci ratio: 2.771845e+00	ci left: 8.439269e-08	ci right 1.857200e-05	k: 1	n:300000
KS ci ratio: 2.771845e+00	ci left: 8.439269e-08	ci right 1.857200e-05	k: 1	n:300000
TP53   300000 perm   349 sec   (861 perm/sec)   p_kst 3.333333e-06   p_cons 3.333333e-06   p_joint 0

Joint ci ratio: 3.919987e+00	ci left: 0	ci right 1.189954e-05	k: 0	n:310000
Cons ci ratio: 2.771845e+00	ci left: 8.167035e-08	ci right 1.797291e-05	k: 1	n:310000
KS ci ratio: 2.771845e+00	ci left: 8.167035e-08	ci right 1.797291e-05	k: 1	n:310000
TP53   310000 perm   361 sec   (858 perm/sec)   p_kst 3.225806e-06   p_cons 3.225806e-06   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.152768e-05	k: 0	n:320000
Cons ci ratio: 2.771846e+00	ci left: 7.911815e-08	ci right 1.741126e-05	k: 1	n:320000
KS ci ratio: 2.771846e+00	ci left: 7.911815e-08	ci right 1.741126e-05	k: 1	n:320000
TP53   320000 perm   374 sec   (855 perm/sec)   p_kst 3.125000e-06   p_cons 3.125000e-06   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.117836e-05	k: 0	n:330000
Cons ci ratio: 2.771846e+00	ci left: 7.672063e-08	ci right 1.688365e-05	k: 1	n:330000
KS ci ratio: 2.771846e+00	ci left: 7.672063e-08	ci right 1.688365e-05	k: 1	n:330000
TP53   330000 perm   387 sec   (852 perm/sec)   p_kst 3.030303e-06   p_cons 3.030303e-06   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.084959e-05	k: 0	n:340000
Cons ci ratio: 2.771846e+00	ci left: 7.446414e-08	ci right 1.638708e-05	k: 1	n:340000
KS ci ratio: 2.771846e+00	ci left: 7.446414e-08	ci right 1.638708e-05	k: 1	n:340000
TP53   340000 perm   401 sec   (849 perm/sec)   p_kst 2.941176e-06   p_cons 2.941176e-06   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 1.053960e-05	k: 0	n:350000
Cons ci ratio: 2.771847e+00	ci left: 7.233659e-08	ci right 1.591888e-05	k: 1	n:350000
KS ci ratio: 2.771847e+00	ci left: 7.233659e-08	ci right 1.591888e-05	k: 1	n:350000
TP53   350000 perm   414 sec   (846 perm/sec)   p_kst 2.857143e-06   p_cons 2.857143e-06   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 1.024683e-05	k: 0	n:360000
Cons ci ratio: 2.771847e+00	ci left: 7.032724e-08	ci right 1.547669e-05	k: 1	n:360000
KS ci ratio: 2.771847e+00	ci left: 7.032724e-08	ci right 1.547669e-05	k: 1	n:360000
TP53   360000 perm   427 sec   (843 perm/sec)   p_kst 2.777778e-06   p_cons 2.777778e-06   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 9.969895e-06	k: 0	n:370000
Cons ci ratio: 2.771847e+00	ci left: 6.842651e-08	ci right 1.505840e-05	k: 1	n:370000
KS ci ratio: 2.771847e+00	ci left: 6.842651e-08	ci right 1.505840e-05	k: 1	n:370000
TP53   370000 perm   441 sec   (840 perm/sec)   p_kst 2.702703e-06   p_cons 2.702703e-06   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.707530e-06	k: 0	n:380000
Cons ci ratio: 2.771848e+00	ci left: 6.662581e-08	ci right 1.466213e-05	k: 1	n:380000
KS ci ratio: 2.771848e+00	ci left: 6.662581e-08	ci right 1.466213e-05	k: 1	n:380000
TP53   380000 perm   454 sec   (836 perm/sec)   p_kst 2.631579e-06   p_cons 2.631579e-06   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.458621e-06	k: 0	n:390000
Cons ci ratio: 2.771848e+00	ci left: 6.491745e-08	ci right 1.428618e-05	k: 1	n:390000
KS ci ratio: 2.771848e+00	ci left: 6.491745e-08	ci right 1.428618e-05	k: 1	n:390000
TP53   390000 perm   468 sec   (834 perm/sec)   p_kst 2.564103e-06   p_cons 2.564103e-06   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.222156e-06	k: 0	n:400000
Cons ci ratio: 2.771848e+00	ci left: 6.329452e-08	ci right 1.392903e-05	k: 1	n:400000
KS ci ratio: 2.771848e+00	ci left: 6.329452e-08	ci right 1.392903e-05	k: 1	n:400000
TP53   400000 perm   482 sec   (831 perm/sec)   p_kst 2.500000e-06   p_cons 2.500000e-06   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 8.997226e-06	k: 0	n:410000
Cons ci ratio: 2.771848e+00	ci left: 6.175075e-08	ci right 1.358930e-05	k: 1	n:410000
KS ci ratio: 2.771848e+00	ci left: 6.175075e-08	ci right 1.358930e-05	k: 1	n:410000
TP53   410000 perm   495 sec   (828 perm/sec)   p_kst 2.439024e-06   p_cons 2.439024e-06   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.783008e-06	k: 0	n:420000
Cons ci ratio: 2.771849e+00	ci left: 6.028049e-08	ci right 1.326575e-05	k: 1	n:420000
KS ci ratio: 2.771849e+00	ci left: 6.028049e-08	ci right 1.326575e-05	k: 1	n:420000
TP53   420000 perm   509 sec   (825 perm/sec)   p_kst 2.380952e-06   p_cons 2.380952e-06   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.578753e-06	k: 0	n:430000
Cons ci ratio: 2.771849e+00	ci left: 5.887862e-08	ci right 1.295724e-05	k: 1	n:430000
KS ci ratio: 2.771849e+00	ci left: 5.887862e-08	ci right 1.295724e-05	k: 1	n:430000
TP53   430000 perm   523 sec   (822 perm/sec)   p_kst 2.325581e-06   p_cons 2.325581e-06   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.383782e-06	k: 0	n:440000
Cons ci ratio: 2.771849e+00	ci left: 5.754047e-08	ci right 1.266276e-05	k: 1	n:440000
KS ci ratio: 2.771849e+00	ci left: 5.754047e-08	ci right 1.266276e-05	k: 1	n:440000
TP53   440000 perm   537 sec   (819 perm/sec)   p_kst 2.272727e-06   p_cons 2.272727e-06   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.197476e-06	k: 0	n:450000
Cons ci ratio: 2.771849e+00	ci left: 5.626179e-08	ci right 1.238137e-05	k: 1	n:450000
KS ci ratio: 2.771849e+00	ci left: 5.626179e-08	ci right 1.238137e-05	k: 1	n:450000
TP53   450000 perm   551 sec   (816 perm/sec)   p_kst 2.222222e-06   p_cons 2.222222e-06   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.019271e-06	k: 0	n:460000
Cons ci ratio: 2.771850e+00	ci left: 5.503871e-08	ci right 1.211221e-05	k: 1	n:460000
KS ci ratio: 2.771850e+00	ci left: 5.503871e-08	ci right 1.211221e-05	k: 1	n:460000
TP53   460000 perm   565 sec   (814 perm/sec)   p_kst 2.173913e-06   p_cons 2.173913e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.848649e-06	k: 0	n:470000
Cons ci ratio: 2.771850e+00	ci left: 5.386768e-08	ci right 1.185450e-05	k: 1	n:470000
KS ci ratio: 2.771850e+00	ci left: 5.386768e-08	ci right 1.185450e-05	k: 1	n:470000
TP53   470000 perm   580 sec   (811 perm/sec)   p_kst 2.127660e-06   p_cons 2.127660e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.685136e-06	k: 0	n:480000
Cons ci ratio: 2.771850e+00	ci left: 5.274543e-08	ci right 1.160754e-05	k: 1	n:480000
KS ci ratio: 2.771850e+00	ci left: 5.274543e-08	ci right 1.160754e-05	k: 1	n:480000
TP53   480000 perm   594 sec   (808 perm/sec)   p_kst 2.083333e-06   p_cons 2.083333e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.528297e-06	k: 0	n:490000
Cons ci ratio: 2.771850e+00	ci left: 5.166899e-08	ci right 1.137065e-05	k: 1	n:490000
KS ci ratio: 2.771850e+00	ci left: 5.166899e-08	ci right 1.137065e-05	k: 1	n:490000
TP53   490000 perm   609 sec   (805 perm/sec)   p_kst 2.040816e-06   p_cons 2.040816e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.377732e-06	k: 0	n:500000
Cons ci ratio: 2.771850e+00	ci left: 5.063561e-08	ci right 1.114324e-05	k: 1	n:500000
KS ci ratio: 2.771850e+00	ci left: 5.063561e-08	ci right 1.114324e-05	k: 1	n:500000
TP53   500000 perm   623 sec   (802 perm/sec)   p_kst 2.000000e-06   p_cons 2.000000e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.233071e-06	k: 0	n:510000
Cons ci ratio: 2.771850e+00	ci left: 4.964276e-08	ci right 1.092474e-05	k: 1	n:510000
KS ci ratio: 2.771850e+00	ci left: 4.964276e-08	ci right 1.092474e-05	k: 1	n:510000
TP53   510000 perm   638 sec   (800 perm/sec)   p_kst 1.960784e-06   p_cons 1.960784e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.093974e-06	k: 0	n:520000
Cons ci ratio: 2.771851e+00	ci left: 4.868809e-08	ci right 1.071465e-05	k: 1	n:520000
KS ci ratio: 2.771851e+00	ci left: 4.868809e-08	ci right 1.071465e-05	k: 1	n:520000
TP53   520000 perm   652 sec   (797 perm/sec)   p_kst 1.923077e-06   p_cons 1.923077e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.960126e-06	k: 0	n:530000
Cons ci ratio: 2.771851e+00	ci left: 4.776945e-08	ci right 1.051249e-05	k: 1	n:530000
KS ci ratio: 2.771851e+00	ci left: 4.776945e-08	ci right 1.051249e-05	k: 1	n:530000
TP53   530000 perm   667 sec   (794 perm/sec)   p_kst 1.886792e-06   p_cons 1.886792e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.831235e-06	k: 0	n:540000
Cons ci ratio: 2.771851e+00	ci left: 4.688483e-08	ci right 1.031781e-05	k: 1	n:540000
KS ci ratio: 2.771851e+00	ci left: 4.688483e-08	ci right 1.031781e-05	k: 1	n:540000
TP53   540000 perm   682 sec   (792 perm/sec)   p_kst 1.851852e-06   p_cons 1.851852e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.707031e-06	k: 0	n:550000
Cons ci ratio: 2.771851e+00	ci left: 4.603238e-08	ci right 1.013022e-05	k: 1	n:550000
KS ci ratio: 2.771851e+00	ci left: 4.603238e-08	ci right 1.013022e-05	k: 1	n:550000
TP53   550000 perm   697 sec   (789 perm/sec)   p_kst 1.818182e-06   p_cons 1.818182e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.587263e-06	k: 0	n:560000
Cons ci ratio: 2.771851e+00	ci left: 4.521037e-08	ci right 9.949323e-06	k: 1	n:560000
KS ci ratio: 2.771851e+00	ci left: 4.521037e-08	ci right 9.949323e-06	k: 1	n:560000
TP53   560000 perm   712 sec   (787 perm/sec)   p_kst 1.785714e-06   p_cons 1.785714e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.471697e-06	k: 0	n:570000
Cons ci ratio: 2.771851e+00	ci left: 4.441721e-08	ci right 9.774774e-06	k: 1	n:570000
KS ci ratio: 2.771851e+00	ci left: 4.441721e-08	ci right 9.774774e-06	k: 1	n:570000
TP53   570000 perm   727 sec   (784 perm/sec)   p_kst 1.754386e-06   p_cons 1.754386e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.360117e-06	k: 0	n:580000
Cons ci ratio: 2.771851e+00	ci left: 4.365139e-08	ci right 9.606244e-06	k: 1	n:580000
KS ci ratio: 2.771851e+00	ci left: 4.365139e-08	ci right 9.606244e-06	k: 1	n:580000
TP53   580000 perm   742 sec   (782 perm/sec)   p_kst 1.724138e-06   p_cons 1.724138e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.252319e-06	k: 0	n:590000
Cons ci ratio: 2.771852e+00	ci left: 4.291154e-08	ci right 9.443427e-06	k: 1	n:590000
KS ci ratio: 2.771852e+00	ci left: 4.291154e-08	ci right 9.443427e-06	k: 1	n:590000
TP53   590000 perm   757 sec   (779 perm/sec)   p_kst 1.694915e-06   p_cons 1.694915e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.148114e-06	k: 0	n:600000
Cons ci ratio: 2.771852e+00	ci left: 4.219635e-08	ci right 9.286037e-06	k: 1	n:600000
KS ci ratio: 2.771852e+00	ci left: 4.219635e-08	ci right 9.286037e-06	k: 1	n:600000
TP53   600000 perm   773 sec   (777 perm/sec)   p_kst 1.666667e-06   p_cons 1.666667e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 6.047325e-06	k: 0	n:610000
Cons ci ratio: 2.771852e+00	ci left: 4.150460e-08	ci right 9.133807e-06	k: 1	n:610000
KS ci ratio: 2.771852e+00	ci left: 4.150460e-08	ci right 9.133807e-06	k: 1	n:610000
TP53   610000 perm   788 sec   (774 perm/sec)   p_kst 1.639344e-06   p_cons 1.639344e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.949788e-06	k: 0	n:620000
Cons ci ratio: 2.771852e+00	ci left: 4.083517e-08	ci right 8.986488e-06	k: 1	n:620000
KS ci ratio: 2.771852e+00	ci left: 4.083517e-08	ci right 8.986488e-06	k: 1	n:620000
TP53   620000 perm   804 sec   (772 perm/sec)   p_kst 1.612903e-06   p_cons 1.612903e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.855347e-06	k: 0	n:630000
Cons ci ratio: 2.771852e+00	ci left: 4.018700e-08	ci right 8.843846e-06	k: 1	n:630000
KS ci ratio: 2.771852e+00	ci left: 4.018700e-08	ci right 8.843846e-06	k: 1	n:630000
TP53   630000 perm   819 sec   (769 perm/sec)   p_kst 1.587302e-06   p_cons 1.587302e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.763858e-06	k: 0	n:640000
Cons ci ratio: 2.771852e+00	ci left: 3.955907e-08	ci right 8.705662e-06	k: 1	n:640000
KS ci ratio: 2.771852e+00	ci left: 3.955907e-08	ci right 8.705662e-06	k: 1	n:640000
TP53   640000 perm   835 sec   (767 perm/sec)   p_kst 1.562500e-06   p_cons 1.562500e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.675183e-06	k: 0	n:650000
Cons ci ratio: 2.771852e+00	ci left: 3.895047e-08	ci right 8.571729e-06	k: 1	n:650000
KS ci ratio: 2.771852e+00	ci left: 3.895047e-08	ci right 8.571729e-06	k: 1	n:650000
TP53   650000 perm   851 sec   (764 perm/sec)   p_kst 1.538462e-06   p_cons 1.538462e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.589196e-06	k: 0	n:660000
Cons ci ratio: 2.771852e+00	ci left: 3.836031e-08	ci right 8.441855e-06	k: 1	n:660000
KS ci ratio: 2.771852e+00	ci left: 3.836031e-08	ci right 8.441855e-06	k: 1	n:660000
TP53   660000 perm   867 sec   (762 perm/sec)   p_kst 1.515152e-06   p_cons 1.515152e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.505775e-06	k: 0	n:670000
Cons ci ratio: 2.771852e+00	ci left: 3.778777e-08	ci right 8.315857e-06	k: 1	n:670000
KS ci ratio: 2.771852e+00	ci left: 3.778777e-08	ci right 8.315857e-06	k: 1	n:670000
TP53   670000 perm   882 sec   (759 perm/sec)   p_kst 1.492537e-06   p_cons 1.492537e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.424808e-06	k: 0	n:680000
Cons ci ratio: 2.771852e+00	ci left: 3.723207e-08	ci right 8.193566e-06	k: 1	n:680000
KS ci ratio: 2.771852e+00	ci left: 3.723207e-08	ci right 8.193566e-06	k: 1	n:680000
TP53   680000 perm   899 sec   (757 perm/sec)   p_kst 1.470588e-06   p_cons 1.470588e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.346188e-06	k: 0	n:690000
Cons ci ratio: 2.771853e+00	ci left: 3.669247e-08	ci right 8.074819e-06	k: 1	n:690000
KS ci ratio: 2.771853e+00	ci left: 3.669247e-08	ci right 8.074819e-06	k: 1	n:690000
TP53   690000 perm   915 sec   (754 perm/sec)   p_kst 1.449275e-06   p_cons 1.449275e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.269814e-06	k: 0	n:700000
Cons ci ratio: 2.771853e+00	ci left: 3.616830e-08	ci right 7.959465e-06	k: 1	n:700000
KS ci ratio: 2.771853e+00	ci left: 3.616830e-08	ci right 7.959465e-06	k: 1	n:700000
TP53   700000 perm   931 sec   (752 perm/sec)   p_kst 1.428571e-06   p_cons 1.428571e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.195591e-06	k: 0	n:710000
Cons ci ratio: 2.771853e+00	ci left: 3.565888e-08	ci right 7.847360e-06	k: 1	n:710000
KS ci ratio: 2.771853e+00	ci left: 3.565888e-08	ci right 7.847360e-06	k: 1	n:710000
TP53   710000 perm   947 sec   (749 perm/sec)   p_kst 1.408451e-06   p_cons 1.408451e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 5.123431e-06	k: 0	n:720000
Cons ci ratio: 2.771853e+00	ci left: 3.516362e-08	ci right 7.738369e-06	k: 1	n:720000
KS ci ratio: 2.771853e+00	ci left: 3.516362e-08	ci right 7.738369e-06	k: 1	n:720000
TP53   720000 perm   964 sec   (747 perm/sec)   p_kst 1.388889e-06   p_cons 1.388889e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 5.053247e-06	k: 0	n:730000
Cons ci ratio: 2.771853e+00	ci left: 3.468193e-08	ci right 7.632364e-06	k: 1	n:730000
KS ci ratio: 2.771853e+00	ci left: 3.468193e-08	ci right 7.632364e-06	k: 1	n:730000
TP53   730000 perm   980 sec   (745 perm/sec)   p_kst 1.369863e-06   p_cons 1.369863e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.984960e-06	k: 0	n:740000
Cons ci ratio: 2.771853e+00	ci left: 3.421325e-08	ci right 7.529225e-06	k: 1	n:740000
KS ci ratio: 2.771853e+00	ci left: 3.421325e-08	ci right 7.529225e-06	k: 1	n:740000
TP53   740000 perm   997 sec   (742 perm/sec)   p_kst 1.351351e-06   p_cons 1.351351e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.918494e-06	k: 0	n:750000
Cons ci ratio: 2.771853e+00	ci left: 3.375708e-08	ci right 7.428835e-06	k: 1	n:750000
KS ci ratio: 2.771853e+00	ci left: 3.375708e-08	ci right 7.428835e-06	k: 1	n:750000
TP53   750000 perm   1014 sec   (740 perm/sec)   p_kst 1.333333e-06   p_cons 1.333333e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.853777e-06	k: 0	n:760000
Cons ci ratio: 2.771853e+00	ci left: 3.331290e-08	ci right 7.331088e-06	k: 1	n:760000
KS ci ratio: 2.771853e+00	ci left: 3.331290e-08	ci right 7.331088e-06	k: 1	n:760000
TP53   760000 perm   1030 sec   (738 perm/sec)   p_kst 1.315789e-06   p_cons 1.315789e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.790741e-06	k: 0	n:770000
Cons ci ratio: 2.771853e+00	ci left: 3.288027e-08	ci right 7.235879e-06	k: 1	n:770000
KS ci ratio: 2.771853e+00	ci left: 3.288027e-08	ci right 7.235879e-06	k: 1	n:770000
TP53   770000 perm   1047 sec   (735 perm/sec)   p_kst 1.298701e-06   p_cons 1.298701e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.729321e-06	k: 0	n:780000
Cons ci ratio: 2.771853e+00	ci left: 3.245873e-08	ci right 7.143112e-06	k: 1	n:780000
KS ci ratio: 2.771853e+00	ci left: 3.245873e-08	ci right 7.143112e-06	k: 1	n:780000
TP53   780000 perm   1064 sec   (733 perm/sec)   p_kst 1.282051e-06   p_cons 1.282051e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.669457e-06	k: 0	n:790000
Cons ci ratio: 2.771853e+00	ci left: 3.204786e-08	ci right 7.052693e-06	k: 1	n:790000
KS ci ratio: 2.771853e+00	ci left: 3.204786e-08	ci right 7.052693e-06	k: 1	n:790000
TP53   790000 perm   1081 sec   (731 perm/sec)   p_kst 1.265823e-06   p_cons 1.265823e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.611089e-06	k: 0	n:800000
Cons ci ratio: 2.771853e+00	ci left: 3.164726e-08	ci right 6.964534e-06	k: 1	n:800000
KS ci ratio: 2.771853e+00	ci left: 3.164726e-08	ci right 6.964534e-06	k: 1	n:800000
TP53   800000 perm   1098 sec   (728 perm/sec)   p_kst 1.250000e-06   p_cons 1.250000e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.554162e-06	k: 0	n:810000
Cons ci ratio: 2.771853e+00	ci left: 3.125655e-08	ci right 6.878553e-06	k: 1	n:810000
KS ci ratio: 2.771853e+00	ci left: 3.125655e-08	ci right 6.878553e-06	k: 1	n:810000
TP53   810000 perm   1115 sec   (726 perm/sec)   p_kst 1.234568e-06   p_cons 1.234568e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.498623e-06	k: 0	n:820000
Cons ci ratio: 2.771854e+00	ci left: 3.087538e-08	ci right 6.794668e-06	k: 1	n:820000
KS ci ratio: 2.771854e+00	ci left: 3.087538e-08	ci right 6.794668e-06	k: 1	n:820000
TP53   820000 perm   1133 sec   (724 perm/sec)   p_kst 1.219512e-06   p_cons 1.219512e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.444423e-06	k: 0	n:830000
Cons ci ratio: 2.771854e+00	ci left: 3.050338e-08	ci right 6.712805e-06	k: 1	n:830000
KS ci ratio: 2.771854e+00	ci left: 3.050338e-08	ci right 6.712805e-06	k: 1	n:830000
TP53   830000 perm   1150 sec   (722 perm/sec)   p_kst 1.204819e-06   p_cons 1.204819e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.391514e-06	k: 0	n:840000
Cons ci ratio: 2.771854e+00	ci left: 3.014025e-08	ci right 6.632891e-06	k: 1	n:840000
KS ci ratio: 2.771854e+00	ci left: 3.014025e-08	ci right 6.632891e-06	k: 1	n:840000
TP53   840000 perm   1167 sec   (720 perm/sec)   p_kst 1.190476e-06   p_cons 1.190476e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.339849e-06	k: 0	n:850000
Cons ci ratio: 2.771854e+00	ci left: 2.978566e-08	ci right 6.554857e-06	k: 1	n:850000
KS ci ratio: 2.771854e+00	ci left: 2.978566e-08	ci right 6.554857e-06	k: 1	n:850000
TP53   850000 perm   1185 sec   (717 perm/sec)   p_kst 1.176471e-06   p_cons 1.176471e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.289386e-06	k: 0	n:860000
Cons ci ratio: 2.771854e+00	ci left: 2.943931e-08	ci right 6.478638e-06	k: 1	n:860000
KS ci ratio: 2.771854e+00	ci left: 2.943931e-08	ci right 6.478638e-06	k: 1	n:860000
TP53   860000 perm   1203 sec   (715 perm/sec)   p_kst 1.162791e-06   p_cons 1.162791e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.240082e-06	k: 0	n:870000
Cons ci ratio: 2.771854e+00	ci left: 2.910093e-08	ci right 6.404171e-06	k: 1	n:870000
KS ci ratio: 2.771854e+00	ci left: 2.910093e-08	ci right 6.404171e-06	k: 1	n:870000
TP53   870000 perm   1220 sec   (713 perm/sec)   p_kst 1.149425e-06   p_cons 1.149425e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.191900e-06	k: 0	n:880000
Cons ci ratio: 2.771854e+00	ci left: 2.877024e-08	ci right 6.331396e-06	k: 1	n:880000
KS ci ratio: 2.771854e+00	ci left: 2.877024e-08	ci right 6.331396e-06	k: 1	n:880000
TP53   880000 perm   1238 sec   (711 perm/sec)   p_kst 1.136364e-06   p_cons 1.136364e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.144800e-06	k: 0	n:890000
Cons ci ratio: 2.771854e+00	ci left: 2.844697e-08	ci right 6.260257e-06	k: 1	n:890000
KS ci ratio: 2.771854e+00	ci left: 2.844697e-08	ci right 6.260257e-06	k: 1	n:890000
TP53   890000 perm   1256 sec   (709 perm/sec)   p_kst 1.123596e-06   p_cons 1.123596e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.098747e-06	k: 0	n:900000
Cons ci ratio: 2.771854e+00	ci left: 2.813090e-08	ci right 6.190699e-06	k: 1	n:900000
KS ci ratio: 2.771854e+00	ci left: 2.813090e-08	ci right 6.190699e-06	k: 1	n:900000
TP53   900000 perm   1274 sec   (706 perm/sec)   p_kst 1.111111e-06   p_cons 1.111111e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.053705e-06	k: 0	n:910000
Cons ci ratio: 2.771854e+00	ci left: 2.782177e-08	ci right 6.122670e-06	k: 1	n:910000
KS ci ratio: 2.771854e+00	ci left: 2.782177e-08	ci right 6.122670e-06	k: 1	n:910000
TP53   910000 perm   1292 sec   (704 perm/sec)   p_kst 1.098901e-06   p_cons 1.098901e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.009644e-06	k: 0	n:920000
Cons ci ratio: 2.771854e+00	ci left: 2.751936e-08	ci right 6.056119e-06	k: 1	n:920000
KS ci ratio: 2.771854e+00	ci left: 2.751936e-08	ci right 6.056119e-06	k: 1	n:920000
TP53   920000 perm   1311 sec   (702 perm/sec)   p_kst 1.086957e-06   p_cons 1.086957e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.966529e-06	k: 0	n:930000
Cons ci ratio: 2.771854e+00	ci left: 2.722345e-08	ci right 5.991000e-06	k: 1	n:930000
KS ci ratio: 2.771854e+00	ci left: 2.722345e-08	ci right 5.991000e-06	k: 1	n:930000
TP53   930000 perm   1329 sec   (700 perm/sec)   p_kst 1.075269e-06   p_cons 1.075269e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.924332e-06	k: 0	n:940000
Cons ci ratio: 2.771854e+00	ci left: 2.693384e-08	ci right 5.927266e-06	k: 1	n:940000
KS ci ratio: 2.771854e+00	ci left: 2.693384e-08	ci right 5.927266e-06	k: 1	n:940000
TP53   940000 perm   1347 sec   (698 perm/sec)   p_kst 1.063830e-06   p_cons 1.063830e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.883023e-06	k: 0	n:950000
Cons ci ratio: 2.771854e+00	ci left: 2.665032e-08	ci right 5.864874e-06	k: 1	n:950000
KS ci ratio: 2.771854e+00	ci left: 2.665032e-08	ci right 5.864874e-06	k: 1	n:950000
TP53   950000 perm   1366 sec   (696 perm/sec)   p_kst 1.052632e-06   p_cons 1.052632e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.842575e-06	k: 0	n:960000
Cons ci ratio: 2.771854e+00	ci left: 2.637272e-08	ci right 5.803781e-06	k: 1	n:960000
KS ci ratio: 2.771854e+00	ci left: 2.637272e-08	ci right 5.803781e-06	k: 1	n:960000
TP53   960000 perm   1384 sec   (693 perm/sec)   p_kst 1.041667e-06   p_cons 1.041667e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.802961e-06	k: 0	n:970000
Cons ci ratio: 2.771854e+00	ci left: 2.610083e-08	ci right 5.743949e-06	k: 1	n:970000
KS ci ratio: 2.771854e+00	ci left: 2.610083e-08	ci right 5.743949e-06	k: 1	n:970000
TP53   970000 perm   1403 sec   (691 perm/sec)   p_kst 1.030928e-06   p_cons 1.030928e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.764156e-06	k: 0	n:980000
Cons ci ratio: 2.771854e+00	ci left: 2.583450e-08	ci right 5.685337e-06	k: 1	n:980000
KS ci ratio: 2.771854e+00	ci left: 2.583450e-08	ci right 5.685337e-06	k: 1	n:980000
TP53   980000 perm   1422 sec   (689 perm/sec)   p_kst 1.020408e-06   p_cons 1.020408e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.726134e-06	k: 0	n:990000
Cons ci ratio: 2.771854e+00	ci left: 2.557354e-08	ci right 5.627910e-06	k: 1	n:990000
KS ci ratio: 2.771854e+00	ci left: 2.557354e-08	ci right 5.627910e-06	k: 1	n:990000
TP53   990000 perm   1441 sec   (687 perm/sec)   p_kst 1.010101e-06   p_cons 1.010101e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.688873e-06	k: 0	n:1000000
Cons ci ratio: 2.771854e+00	ci left: 2.531781e-08	ci right 5.571631e-06	k: 1	n:1000000
KS ci ratio: 2.771854e+00	ci left: 2.531781e-08	ci right 5.571631e-06	k: 1	n:1000000
TP53   1000000 perm   1460 sec   (685 perm/sec)   p_kst 1.000000e-06   p_cons 1.000000e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.652349e-06	k: 0	n:1010000
Cons ci ratio: 2.771854e+00	ci left: 2.506714e-08	ci right 5.516466e-06	k: 1	n:1010000
KS ci ratio: 2.771854e+00	ci left: 2.506714e-08	ci right 5.516466e-06	k: 1	n:1010000
TP53   1010000 perm   1479 sec   (683 perm/sec)   p_kst 9.900990e-07   p_cons 9.900990e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.616542e-06	k: 0	n:1020000
Cons ci ratio: 2.771855e+00	ci left: 2.482138e-08	ci right 5.462383e-06	k: 1	n:1020000
KS ci ratio: 2.771855e+00	ci left: 2.482138e-08	ci right 5.462383e-06	k: 1	n:1020000
TP53   1020000 perm   1498 sec   (681 perm/sec)   p_kst 9.803922e-07   p_cons 9.803922e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.581430e-06	k: 0	n:1030000
Cons ci ratio: 2.771855e+00	ci left: 2.458040e-08	ci right 5.409351e-06	k: 1	n:1030000
KS ci ratio: 2.771855e+00	ci left: 2.458040e-08	ci right 5.409351e-06	k: 1	n:1030000
TP53   1030000 perm   1517 sec   (679 perm/sec)   p_kst 9.708738e-07   p_cons 9.708738e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.546993e-06	k: 0	n:1040000
Cons ci ratio: 2.771855e+00	ci left: 2.434405e-08	ci right 5.357338e-06	k: 1	n:1040000
KS ci ratio: 2.771855e+00	ci left: 2.434405e-08	ci right 5.357338e-06	k: 1	n:1040000
TP53   1040000 perm   1536 sec   (677 perm/sec)   p_kst 9.615385e-07   p_cons 9.615385e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.513212e-06	k: 0	n:1050000
Cons ci ratio: 2.771855e+00	ci left: 2.411220e-08	ci right 5.306315e-06	k: 1	n:1050000
KS ci ratio: 2.771855e+00	ci left: 2.411220e-08	ci right 5.306315e-06	k: 1	n:1050000
TP53   1050000 perm   1555 sec   (675 perm/sec)   p_kst 9.523810e-07   p_cons 9.523810e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.480069e-06	k: 0	n:1060000
Cons ci ratio: 2.771855e+00	ci left: 2.388472e-08	ci right 5.256256e-06	k: 1	n:1060000
KS ci ratio: 2.771855e+00	ci left: 2.388472e-08	ci right 5.256256e-06	k: 1	n:1060000
TP53   1060000 perm   1575 sec   (673 perm/sec)   p_kst 9.433962e-07   p_cons 9.433962e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.447545e-06	k: 0	n:1070000
Cons ci ratio: 2.771855e+00	ci left: 2.366150e-08	ci right 5.207132e-06	k: 1	n:1070000
KS ci ratio: 2.771855e+00	ci left: 2.366150e-08	ci right 5.207132e-06	k: 1	n:1070000
TP53   1070000 perm   1595 sec   (671 perm/sec)   p_kst 9.345794e-07   p_cons 9.345794e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.415623e-06	k: 0	n:1080000
Cons ci ratio: 2.771855e+00	ci left: 2.344241e-08	ci right 5.158918e-06	k: 1	n:1080000
KS ci ratio: 2.771855e+00	ci left: 2.344241e-08	ci right 5.158918e-06	k: 1	n:1080000
TP53   1080000 perm   1614 sec   (669 perm/sec)   p_kst 9.259259e-07   p_cons 9.259259e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.384287e-06	k: 0	n:1090000
Cons ci ratio: 2.771855e+00	ci left: 2.322735e-08	ci right 5.111589e-06	k: 1	n:1090000
KS ci ratio: 2.771855e+00	ci left: 2.322735e-08	ci right 5.111589e-06	k: 1	n:1090000
TP53   1090000 perm   1634 sec   (667 perm/sec)   p_kst 9.174312e-07   p_cons 9.174312e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.353521e-06	k: 0	n:1100000
Cons ci ratio: 2.771855e+00	ci left: 2.301619e-08	ci right 5.065120e-06	k: 1	n:1100000
KS ci ratio: 2.771855e+00	ci left: 2.301619e-08	ci right 5.065120e-06	k: 1	n:1100000
TP53   1100000 perm   1654 sec   (665 perm/sec)   p_kst 9.090909e-07   p_cons 9.090909e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.323309e-06	k: 0	n:1110000
Cons ci ratio: 2.771855e+00	ci left: 2.280884e-08	ci right 5.019488e-06	k: 1	n:1110000
KS ci ratio: 2.771855e+00	ci left: 2.280884e-08	ci right 5.019488e-06	k: 1	n:1110000
TP53   1110000 perm   1674 sec   (663 perm/sec)   p_kst 9.009009e-07   p_cons 9.009009e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.293637e-06	k: 0	n:1120000
Cons ci ratio: 2.771855e+00	ci left: 2.260519e-08	ci right 4.974671e-06	k: 1	n:1120000
KS ci ratio: 2.771855e+00	ci left: 2.260519e-08	ci right 4.974671e-06	k: 1	n:1120000
TP53   1120000 perm   1694 sec   (661 perm/sec)   p_kst 8.928571e-07   p_cons 8.928571e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.264490e-06	k: 0	n:1130000
Cons ci ratio: 2.771855e+00	ci left: 2.240514e-08	ci right 4.930648e-06	k: 1	n:1130000
KS ci ratio: 2.771855e+00	ci left: 2.240514e-08	ci right 4.930648e-06	k: 1	n:1130000
TP53   1130000 perm   1714 sec   (659 perm/sec)   p_kst 8.849558e-07   p_cons 8.849558e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.235854e-06	k: 0	n:1140000
Cons ci ratio: 2.771855e+00	ci left: 2.220860e-08	ci right 4.887397e-06	k: 1	n:1140000
KS ci ratio: 2.771855e+00	ci left: 2.220860e-08	ci right 4.887397e-06	k: 1	n:1140000
TP53   1140000 perm   1734 sec   (657 perm/sec)   p_kst 8.771930e-07   p_cons 8.771930e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.207716e-06	k: 0	n:1150000
Cons ci ratio: 2.771855e+00	ci left: 2.201548e-08	ci right 4.844898e-06	k: 1	n:1150000
KS ci ratio: 2.771855e+00	ci left: 2.201548e-08	ci right 4.844898e-06	k: 1	n:1150000
TP53   1150000 perm   1754 sec   (655 perm/sec)   p_kst 8.695652e-07   p_cons 8.695652e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.180063e-06	k: 0	n:1160000
Cons ci ratio: 2.771855e+00	ci left: 2.182570e-08	ci right 4.803131e-06	k: 1	n:1160000
KS ci ratio: 2.771855e+00	ci left: 2.182570e-08	ci right 4.803131e-06	k: 1	n:1160000
TP53   1160000 perm   1775 sec   (654 perm/sec)   p_kst 8.620690e-07   p_cons 8.620690e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.152883e-06	k: 0	n:1170000
Cons ci ratio: 2.771855e+00	ci left: 2.163915e-08	ci right 4.762079e-06	k: 1	n:1170000
KS ci ratio: 2.771855e+00	ci left: 2.163915e-08	ci right 4.762079e-06	k: 1	n:1170000
TP53   1170000 perm   1795 sec   (652 perm/sec)   p_kst 8.547009e-07   p_cons 8.547009e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.126164e-06	k: 0	n:1180000
Cons ci ratio: 2.771855e+00	ci left: 2.145577e-08	ci right 4.721723e-06	k: 1	n:1180000
KS ci ratio: 2.771855e+00	ci left: 2.145577e-08	ci right 4.721723e-06	k: 1	n:1180000
TP53   1180000 perm   1816 sec   (650 perm/sec)   p_kst 8.474576e-07   p_cons 8.474576e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.099894e-06	k: 0	n:1190000
Cons ci ratio: 2.771855e+00	ci left: 2.127547e-08	ci right 4.682044e-06	k: 1	n:1190000
KS ci ratio: 2.771855e+00	ci left: 2.127547e-08	ci right 4.682044e-06	k: 1	n:1190000
TP53   1190000 perm   1836 sec   (648 perm/sec)   p_kst 8.403361e-07   p_cons 8.403361e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.074061e-06	k: 0	n:1200000
Cons ci ratio: 2.771855e+00	ci left: 2.109817e-08	ci right 4.643027e-06	k: 1	n:1200000
KS ci ratio: 2.771855e+00	ci left: 2.109817e-08	ci right 4.643027e-06	k: 1	n:1200000
TP53   1200000 perm   1857 sec   (646 perm/sec)   p_kst 8.333333e-07   p_cons 8.333333e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.048656e-06	k: 0	n:1210000
Cons ci ratio: 2.771855e+00	ci left: 2.092381e-08	ci right 4.604655e-06	k: 1	n:1210000
KS ci ratio: 2.771855e+00	ci left: 2.092381e-08	ci right 4.604655e-06	k: 1	n:1210000
TP53   1210000 perm   1878 sec   (644 perm/sec)   p_kst 8.264463e-07   p_cons 8.264463e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.023667e-06	k: 0	n:1220000
Cons ci ratio: 2.771855e+00	ci left: 2.075230e-08	ci right 4.566912e-06	k: 1	n:1220000
KS ci ratio: 2.771855e+00	ci left: 2.075230e-08	ci right 4.566912e-06	k: 1	n:1220000
TP53   1220000 perm   1899 sec   (643 perm/sec)   p_kst 8.196721e-07   p_cons 8.196721e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.999084e-06	k: 0	n:1230000
Cons ci ratio: 2.771855e+00	ci left: 2.058358e-08	ci right 4.529783e-06	k: 1	n:1230000
KS ci ratio: 2.771855e+00	ci left: 2.058358e-08	ci right 4.529783e-06	k: 1	n:1230000
TP53   1230000 perm   1920 sec   (641 perm/sec)   p_kst 8.130081e-07   p_cons 8.130081e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.974898e-06	k: 0	n:1240000
Cons ci ratio: 2.771855e+00	ci left: 2.041759e-08	ci right 4.493253e-06	k: 1	n:1240000
KS ci ratio: 2.771855e+00	ci left: 2.041759e-08	ci right 4.493253e-06	k: 1	n:1240000
TP53   1240000 perm   1941 sec   (639 perm/sec)   p_kst 8.064516e-07   p_cons 8.064516e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.951099e-06	k: 0	n:1250000
Cons ci ratio: 2.771855e+00	ci left: 2.025425e-08	ci right 4.457307e-06	k: 1	n:1250000
KS ci ratio: 2.771855e+00	ci left: 2.025425e-08	ci right 4.457307e-06	k: 1	n:1250000
TP53   1250000 perm   1962 sec   (637 perm/sec)   p_kst 8.000000e-07   p_cons 8.000000e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.927678e-06	k: 0	n:1260000
Cons ci ratio: 2.771855e+00	ci left: 2.009350e-08	ci right 4.421931e-06	k: 1	n:1260000
KS ci ratio: 2.771855e+00	ci left: 2.009350e-08	ci right 4.421931e-06	k: 1	n:1260000
TP53   1260000 perm   1983 sec   (635 perm/sec)   p_kst 7.936508e-07   p_cons 7.936508e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.904625e-06	k: 0	n:1270000
Cons ci ratio: 2.771855e+00	ci left: 1.993528e-08	ci right 4.387113e-06	k: 1	n:1270000
KS ci ratio: 2.771855e+00	ci left: 1.993528e-08	ci right 4.387113e-06	k: 1	n:1270000
TP53   1270000 perm   2004 sec   (634 perm/sec)   p_kst 7.874016e-07   p_cons 7.874016e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.881933e-06	k: 0	n:1280000
Cons ci ratio: 2.771855e+00	ci left: 1.977954e-08	ci right 4.352839e-06	k: 1	n:1280000
KS ci ratio: 2.771855e+00	ci left: 1.977954e-08	ci right 4.352839e-06	k: 1	n:1280000
TP53   1280000 perm   2026 sec   (632 perm/sec)   p_kst 7.812500e-07   p_cons 7.812500e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.859592e-06	k: 0	n:1290000
Cons ci ratio: 2.771855e+00	ci left: 1.962621e-08	ci right 4.319096e-06	k: 1	n:1290000
KS ci ratio: 2.771855e+00	ci left: 1.962621e-08	ci right 4.319096e-06	k: 1	n:1290000
TP53   1290000 perm   2047 sec   (630 perm/sec)   p_kst 7.751938e-07   p_cons 7.751938e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.837596e-06	k: 0	n:1300000
Cons ci ratio: 2.771855e+00	ci left: 1.947524e-08	ci right 4.285872e-06	k: 1	n:1300000
KS ci ratio: 2.771855e+00	ci left: 1.947524e-08	ci right 4.285872e-06	k: 1	n:1300000
TP53   1300000 perm   2069 sec   (628 perm/sec)   p_kst 7.692308e-07   p_cons 7.692308e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.815935e-06	k: 0	n:1310000
Cons ci ratio: 2.771855e+00	ci left: 1.932657e-08	ci right 4.253155e-06	k: 1	n:1310000
KS ci ratio: 2.771855e+00	ci left: 1.932657e-08	ci right 4.253155e-06	k: 1	n:1310000
TP53   1310000 perm   2090 sec   (627 perm/sec)   p_kst 7.633588e-07   p_cons 7.633588e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.794602e-06	k: 0	n:1320000
Cons ci ratio: 2.771855e+00	ci left: 1.918016e-08	ci right 4.220935e-06	k: 1	n:1320000
KS ci ratio: 2.771855e+00	ci left: 1.918016e-08	ci right 4.220935e-06	k: 1	n:1320000
TP53   1320000 perm   2112 sec   (625 perm/sec)   p_kst 7.575758e-07   p_cons 7.575758e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.773590e-06	k: 0	n:1330000
Cons ci ratio: 2.771855e+00	ci left: 1.903595e-08	ci right 4.189198e-06	k: 1	n:1330000
KS ci ratio: 2.771855e+00	ci left: 1.903595e-08	ci right 4.189198e-06	k: 1	n:1330000
TP53   1330000 perm   2134 sec   (623 perm/sec)   p_kst 7.518797e-07   p_cons 7.518797e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.752891e-06	k: 0	n:1340000
Cons ci ratio: 2.771855e+00	ci left: 1.889389e-08	ci right 4.157936e-06	k: 1	n:1340000
KS ci ratio: 2.771855e+00	ci left: 1.889389e-08	ci right 4.157936e-06	k: 1	n:1340000
TP53   1340000 perm   2156 sec   (622 perm/sec)   p_kst 7.462687e-07   p_cons 7.462687e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.732500e-06	k: 0	n:1350000
Cons ci ratio: 2.771856e+00	ci left: 1.875393e-08	ci right 4.127136e-06	k: 1	n:1350000
KS ci ratio: 2.771856e+00	ci left: 1.875393e-08	ci right 4.127136e-06	k: 1	n:1350000
TP53   1350000 perm   2178 sec   (620 perm/sec)   p_kst 7.407407e-07   p_cons 7.407407e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.712408e-06	k: 0	n:1360000
Cons ci ratio: 2.771856e+00	ci left: 1.861604e-08	ci right 4.096790e-06	k: 1	n:1360000
KS ci ratio: 2.771856e+00	ci left: 1.861604e-08	ci right 4.096790e-06	k: 1	n:1360000
TP53   1360000 perm   2200 sec   (618 perm/sec)   p_kst 7.352941e-07   p_cons 7.352941e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.692609e-06	k: 0	n:1370000
Cons ci ratio: 2.771856e+00	ci left: 1.848015e-08	ci right 4.066886e-06	k: 1	n:1370000
KS ci ratio: 2.771856e+00	ci left: 1.848015e-08	ci right 4.066886e-06	k: 1	n:1370000
TP53   1370000 perm   2222 sec   (617 perm/sec)   p_kst 7.299270e-07   p_cons 7.299270e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.673097e-06	k: 0	n:1380000
Cons ci ratio: 2.771856e+00	ci left: 1.834624e-08	ci right 4.037416e-06	k: 1	n:1380000
KS ci ratio: 2.771856e+00	ci left: 1.834624e-08	ci right 4.037416e-06	k: 1	n:1380000
TP53   1380000 perm   2244 sec   (615 perm/sec)   p_kst 7.246377e-07   p_cons 7.246377e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.653867e-06	k: 0	n:1390000
Cons ci ratio: 2.771856e+00	ci left: 1.821425e-08	ci right 4.008370e-06	k: 1	n:1390000
KS ci ratio: 2.771856e+00	ci left: 1.821425e-08	ci right 4.008370e-06	k: 1	n:1390000
TP53   1390000 perm   2267 sec   (613 perm/sec)   p_kst 7.194245e-07   p_cons 7.194245e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.634910e-06	k: 0	n:1400000
Cons ci ratio: 2.771856e+00	ci left: 1.808415e-08	ci right 3.979739e-06	k: 1	n:1400000
KS ci ratio: 2.771856e+00	ci left: 1.808415e-08	ci right 3.979739e-06	k: 1	n:1400000
TP53   1400000 perm   2289 sec   (612 perm/sec)   p_kst 7.142857e-07   p_cons 7.142857e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.616223e-06	k: 0	n:1410000
Cons ci ratio: 2.771856e+00	ci left: 1.795589e-08	ci right 3.951514e-06	k: 1	n:1410000
KS ci ratio: 2.771856e+00	ci left: 1.795589e-08	ci right 3.951514e-06	k: 1	n:1410000
TP53   1410000 perm   2311 sec   (610 perm/sec)   p_kst 7.092199e-07   p_cons 7.092199e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.597799e-06	k: 0	n:1420000
Cons ci ratio: 2.771856e+00	ci left: 1.782944e-08	ci right 3.923686e-06	k: 1	n:1420000
KS ci ratio: 2.771856e+00	ci left: 1.782944e-08	ci right 3.923686e-06	k: 1	n:1420000
TP53   1420000 perm   2334 sec   (608 perm/sec)   p_kst 7.042254e-07   p_cons 7.042254e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.579633e-06	k: 0	n:1430000
Cons ci ratio: 2.771856e+00	ci left: 1.770476e-08	ci right 3.896248e-06	k: 1	n:1430000
KS ci ratio: 2.771856e+00	ci left: 1.770476e-08	ci right 3.896248e-06	k: 1	n:1430000
TP53   1430000 perm   2356 sec   (607 perm/sec)   p_kst 6.993007e-07   p_cons 6.993007e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.561719e-06	k: 0	n:1440000
Cons ci ratio: 2.771856e+00	ci left: 1.758181e-08	ci right 3.869191e-06	k: 1	n:1440000
KS ci ratio: 2.771856e+00	ci left: 1.758181e-08	ci right 3.869191e-06	k: 1	n:1440000
TP53   1440000 perm   2379 sec   (605 perm/sec)   p_kst 6.944444e-07   p_cons 6.944444e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.544052e-06	k: 0	n:1450000
Cons ci ratio: 2.771856e+00	ci left: 1.746056e-08	ci right 3.842507e-06	k: 1	n:1450000
KS ci ratio: 2.771856e+00	ci left: 1.746056e-08	ci right 3.842507e-06	k: 1	n:1450000
TP53   1450000 perm   2402 sec   (604 perm/sec)   p_kst 6.896552e-07   p_cons 6.896552e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.526627e-06	k: 0	n:1460000
Cons ci ratio: 2.771856e+00	ci left: 1.734096e-08	ci right 3.816188e-06	k: 1	n:1460000
KS ci ratio: 2.771856e+00	ci left: 1.734096e-08	ci right 3.816188e-06	k: 1	n:1460000
TP53   1460000 perm   2424 sec   (602 perm/sec)   p_kst 6.849315e-07   p_cons 6.849315e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.509439e-06	k: 0	n:1470000
Cons ci ratio: 2.771856e+00	ci left: 1.722300e-08	ci right 3.790228e-06	k: 1	n:1470000
KS ci ratio: 2.771856e+00	ci left: 1.722300e-08	ci right 3.790228e-06	k: 1	n:1470000
TP53   1470000 perm   2447 sec   (601 perm/sec)   p_kst 6.802721e-07   p_cons 6.802721e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.492483e-06	k: 0	n:1480000
Cons ci ratio: 2.771856e+00	ci left: 1.710663e-08	ci right 3.764618e-06	k: 1	n:1480000
KS ci ratio: 2.771856e+00	ci left: 1.710663e-08	ci right 3.764618e-06	k: 1	n:1480000
TP53   1480000 perm   2471 sec   (599 perm/sec)   p_kst 6.756757e-07   p_cons 6.756757e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.475755e-06	k: 0	n:1490000
Cons ci ratio: 2.771856e+00	ci left: 1.699182e-08	ci right 3.739352e-06	k: 1	n:1490000
KS ci ratio: 2.771856e+00	ci left: 1.699182e-08	ci right 3.739352e-06	k: 1	n:1490000
TP53   1490000 perm   2494 sec   (597 perm/sec)   p_kst 6.711409e-07   p_cons 6.711409e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.459250e-06	k: 0	n:1500000
Cons ci ratio: 2.771856e+00	ci left: 1.687854e-08	ci right 3.714423e-06	k: 1	n:1500000
KS ci ratio: 2.771856e+00	ci left: 1.687854e-08	ci right 3.714423e-06	k: 1	n:1500000
TP53   1500000 perm   2517 sec   (596 perm/sec)   p_kst 6.666667e-07   p_cons 6.666667e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.442964e-06	k: 0	n:1510000
Cons ci ratio: 2.771856e+00	ci left: 1.676676e-08	ci right 3.689824e-06	k: 1	n:1510000
KS ci ratio: 2.771856e+00	ci left: 1.676676e-08	ci right 3.689824e-06	k: 1	n:1510000
TP53   1510000 perm   2540 sec   (594 perm/sec)   p_kst 6.622517e-07   p_cons 6.622517e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.426891e-06	k: 0	n:1520000
Cons ci ratio: 2.771856e+00	ci left: 1.665645e-08	ci right 3.665549e-06	k: 1	n:1520000
KS ci ratio: 2.771856e+00	ci left: 1.665645e-08	ci right 3.665549e-06	k: 1	n:1520000
TP53   1520000 perm   2564 sec   (593 perm/sec)   p_kst 6.578947e-07   p_cons 6.578947e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.411029e-06	k: 0	n:1530000
Cons ci ratio: 2.771856e+00	ci left: 1.654759e-08	ci right 3.641592e-06	k: 1	n:1530000
KS ci ratio: 2.771856e+00	ci left: 1.654759e-08	ci right 3.641592e-06	k: 1	n:1530000
TP53   1530000 perm   2588 sec   (591 perm/sec)   p_kst 6.535948e-07   p_cons 6.535948e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.395373e-06	k: 0	n:1540000
Cons ci ratio: 2.771856e+00	ci left: 1.644014e-08	ci right 3.617945e-06	k: 1	n:1540000
KS ci ratio: 2.771856e+00	ci left: 1.644014e-08	ci right 3.617945e-06	k: 1	n:1540000
TP53   1540000 perm   2611 sec   (590 perm/sec)   p_kst 6.493506e-07   p_cons 6.493506e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.379919e-06	k: 0	n:1550000
Cons ci ratio: 2.771856e+00	ci left: 1.633407e-08	ci right 3.594603e-06	k: 1	n:1550000
KS ci ratio: 2.771856e+00	ci left: 1.633407e-08	ci right 3.594603e-06	k: 1	n:1550000
TP53   1550000 perm   2635 sec   (588 perm/sec)   p_kst 6.451613e-07   p_cons 6.451613e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.364664e-06	k: 0	n:1560000
Cons ci ratio: 2.771856e+00	ci left: 1.622936e-08	ci right 3.571561e-06	k: 1	n:1560000
KS ci ratio: 2.771856e+00	ci left: 1.622936e-08	ci right 3.571561e-06	k: 1	n:1560000
TP53   1560000 perm   2658 sec   (587 perm/sec)   p_kst 6.410256e-07   p_cons 6.410256e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.349602e-06	k: 0	n:1570000
Cons ci ratio: 2.771856e+00	ci left: 1.612599e-08	ci right 3.548812e-06	k: 1	n:1570000
KS ci ratio: 2.771856e+00	ci left: 1.612599e-08	ci right 3.548812e-06	k: 1	n:1570000
TP53   1570000 perm   2683 sec   (585 perm/sec)   p_kst 6.369427e-07   p_cons 6.369427e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.334731e-06	k: 0	n:1580000
Cons ci ratio: 2.771856e+00	ci left: 1.602393e-08	ci right 3.526351e-06	k: 1	n:1580000
KS ci ratio: 2.771856e+00	ci left: 1.602393e-08	ci right 3.526351e-06	k: 1	n:1580000
TP53   1580000 perm   2706 sec   (584 perm/sec)   p_kst 6.329114e-07   p_cons 6.329114e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.320047e-06	k: 0	n:1590000
Cons ci ratio: 2.771856e+00	ci left: 1.592315e-08	ci right 3.504173e-06	k: 1	n:1590000
KS ci ratio: 2.771856e+00	ci left: 1.592315e-08	ci right 3.504173e-06	k: 1	n:1590000
TP53   1590000 perm   2730 sec   (582 perm/sec)   p_kst 6.289308e-07   p_cons 6.289308e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.305547e-06	k: 0	n:1600000
Cons ci ratio: 2.771856e+00	ci left: 1.582363e-08	ci right 3.482272e-06	k: 1	n:1600000
KS ci ratio: 2.771856e+00	ci left: 1.582363e-08	ci right 3.482272e-06	k: 1	n:1600000
TP53   1600000 perm   2754 sec   (581 perm/sec)   p_kst 6.250000e-07   p_cons 6.250000e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.291227e-06	k: 0	n:1610000
Cons ci ratio: 2.771856e+00	ci left: 1.572535e-08	ci right 3.460643e-06	k: 1	n:1610000
KS ci ratio: 2.771856e+00	ci left: 1.572535e-08	ci right 3.460643e-06	k: 1	n:1610000
TP53   1610000 perm   2778 sec   (579 perm/sec)   p_kst 6.211180e-07   p_cons 6.211180e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.277083e-06	k: 0	n:1620000
Cons ci ratio: 2.771856e+00	ci left: 1.562828e-08	ci right 3.439281e-06	k: 1	n:1620000
KS ci ratio: 2.771856e+00	ci left: 1.562828e-08	ci right 3.439281e-06	k: 1	n:1620000
TP53   1620000 perm   2803 sec   (578 perm/sec)   p_kst 6.172840e-07   p_cons 6.172840e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.263114e-06	k: 0	n:1630000
Cons ci ratio: 2.771856e+00	ci left: 1.553240e-08	ci right 3.418181e-06	k: 1	n:1630000
KS ci ratio: 2.771856e+00	ci left: 1.553240e-08	ci right 3.418181e-06	k: 1	n:1630000
TP53   1630000 perm   2828 sec   (576 perm/sec)   p_kst 6.134969e-07   p_cons 6.134969e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.249314e-06	k: 0	n:1640000
Cons ci ratio: 2.771856e+00	ci left: 1.543769e-08	ci right 3.397339e-06	k: 1	n:1640000
KS ci ratio: 2.771856e+00	ci left: 1.543769e-08	ci right 3.397339e-06	k: 1	n:1640000
TP53   1640000 perm   2852 sec   (575 perm/sec)   p_kst 6.097561e-07   p_cons 6.097561e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.235682e-06	k: 0	n:1650000
Cons ci ratio: 2.771856e+00	ci left: 1.534413e-08	ci right 3.376749e-06	k: 1	n:1650000
KS ci ratio: 2.771856e+00	ci left: 1.534413e-08	ci right 3.376749e-06	k: 1	n:1650000
TP53   1650000 perm   2877 sec   (574 perm/sec)   p_kst 6.060606e-07   p_cons 6.060606e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.222214e-06	k: 0	n:1660000
Cons ci ratio: 2.771856e+00	ci left: 1.525169e-08	ci right 3.356407e-06	k: 1	n:1660000
KS ci ratio: 2.771856e+00	ci left: 1.525169e-08	ci right 3.356407e-06	k: 1	n:1660000
TP53   1660000 perm   2902 sec   (572 perm/sec)   p_kst 6.024096e-07   p_cons 6.024096e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.208907e-06	k: 0	n:1670000
Cons ci ratio: 2.771856e+00	ci left: 1.516036e-08	ci right 3.336309e-06	k: 1	n:1670000
KS ci ratio: 2.771856e+00	ci left: 1.516036e-08	ci right 3.336309e-06	k: 1	n:1670000
TP53   1670000 perm   2926 sec   (571 perm/sec)   p_kst 5.988024e-07   p_cons 5.988024e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.195759e-06	k: 0	n:1680000
Cons ci ratio: 2.771856e+00	ci left: 1.507012e-08	ci right 3.316450e-06	k: 1	n:1680000
KS ci ratio: 2.771856e+00	ci left: 1.507012e-08	ci right 3.316450e-06	k: 1	n:1680000
TP53   1680000 perm   2951 sec   (569 perm/sec)   p_kst 5.952381e-07   p_cons 5.952381e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.182767e-06	k: 0	n:1690000
Cons ci ratio: 2.771856e+00	ci left: 1.498095e-08	ci right 3.296826e-06	k: 1	n:1690000
KS ci ratio: 2.771856e+00	ci left: 1.498095e-08	ci right 3.296826e-06	k: 1	n:1690000
TP53   1690000 perm   2976 sec   (568 perm/sec)   p_kst 5.917160e-07   p_cons 5.917160e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.169927e-06	k: 0	n:1700000
Cons ci ratio: 2.771856e+00	ci left: 1.489283e-08	ci right 3.277433e-06	k: 1	n:1700000
KS ci ratio: 2.771856e+00	ci left: 1.489283e-08	ci right 3.277433e-06	k: 1	n:1700000
TP53   1700000 perm   3001 sec   (566 perm/sec)   p_kst 5.882353e-07   p_cons 5.882353e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.157237e-06	k: 0	n:1710000
Cons ci ratio: 2.771856e+00	ci left: 1.480574e-08	ci right 3.258267e-06	k: 1	n:1710000
KS ci ratio: 2.771856e+00	ci left: 1.480574e-08	ci right 3.258267e-06	k: 1	n:1710000
TP53   1710000 perm   3026 sec   (565 perm/sec)   p_kst 5.847953e-07   p_cons 5.847953e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.144695e-06	k: 0	n:1720000
Cons ci ratio: 2.771856e+00	ci left: 1.471966e-08	ci right 3.239323e-06	k: 1	n:1720000
KS ci ratio: 2.771856e+00	ci left: 1.471966e-08	ci right 3.239323e-06	k: 1	n:1720000
TP53   1720000 perm   3052 sec   (564 perm/sec)   p_kst 5.813953e-07   p_cons 5.813953e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.132298e-06	k: 0	n:1730000
Cons ci ratio: 2.771856e+00	ci left: 1.463457e-08	ci right 3.220599e-06	k: 1	n:1730000
KS ci ratio: 2.771856e+00	ci left: 1.463457e-08	ci right 3.220599e-06	k: 1	n:1730000
TP53   1730000 perm   3077 sec   (562 perm/sec)   p_kst 5.780347e-07   p_cons 5.780347e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.120043e-06	k: 0	n:1740000
Cons ci ratio: 2.771856e+00	ci left: 1.455046e-08	ci right 3.202090e-06	k: 1	n:1740000
KS ci ratio: 2.771856e+00	ci left: 1.455046e-08	ci right 3.202090e-06	k: 1	n:1740000
TP53   1740000 perm   3102 sec   (561 perm/sec)   p_kst 5.747126e-07   p_cons 5.747126e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.107929e-06	k: 0	n:1750000
Cons ci ratio: 2.771856e+00	ci left: 1.446732e-08	ci right 3.183792e-06	k: 1	n:1750000
KS ci ratio: 2.771856e+00	ci left: 1.446732e-08	ci right 3.183792e-06	k: 1	n:1750000
TP53   1750000 perm   3127 sec   (560 perm/sec)   p_kst 5.714286e-07   p_cons 5.714286e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.095952e-06	k: 0	n:1760000
Cons ci ratio: 2.771856e+00	ci left: 1.438512e-08	ci right 3.165702e-06	k: 1	n:1760000
KS ci ratio: 2.771856e+00	ci left: 1.438512e-08	ci right 3.165702e-06	k: 1	n:1760000
TP53   1760000 perm   3153 sec   (558 perm/sec)   p_kst 5.681818e-07   p_cons 5.681818e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.084111e-06	k: 0	n:1770000
Cons ci ratio: 2.771856e+00	ci left: 1.430385e-08	ci right 3.147817e-06	k: 1	n:1770000
KS ci ratio: 2.771856e+00	ci left: 1.430385e-08	ci right 3.147817e-06	k: 1	n:1770000
TP53   1770000 perm   3179 sec   (557 perm/sec)   p_kst 5.649718e-07   p_cons 5.649718e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.072402e-06	k: 0	n:1780000
Cons ci ratio: 2.771856e+00	ci left: 1.422349e-08	ci right 3.130133e-06	k: 1	n:1780000
KS ci ratio: 2.771856e+00	ci left: 1.422349e-08	ci right 3.130133e-06	k: 1	n:1780000
TP53   1780000 perm   3204 sec   (556 perm/sec)   p_kst 5.617978e-07   p_cons 5.617978e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.060824e-06	k: 0	n:1790000
Cons ci ratio: 2.771856e+00	ci left: 1.414403e-08	ci right 3.112646e-06	k: 1	n:1790000
KS ci ratio: 2.771856e+00	ci left: 1.414403e-08	ci right 3.112646e-06	k: 1	n:1790000
TP53   1790000 perm   3231 sec   (554 perm/sec)   p_kst 5.586592e-07   p_cons 5.586592e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.049375e-06	k: 0	n:1800000
Cons ci ratio: 2.771856e+00	ci left: 1.406545e-08	ci right 3.095354e-06	k: 1	n:1800000
KS ci ratio: 2.771856e+00	ci left: 1.406545e-08	ci right 3.095354e-06	k: 1	n:1800000
TP53   1800000 perm   3257 sec   (553 perm/sec)   p_kst 5.555556e-07   p_cons 5.555556e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.038053e-06	k: 0	n:1810000
Cons ci ratio: 2.771856e+00	ci left: 1.398774e-08	ci right 3.078252e-06	k: 1	n:1810000
KS ci ratio: 2.771856e+00	ci left: 1.398774e-08	ci right 3.078252e-06	k: 1	n:1810000
TP53   1810000 perm   3284 sec   (551 perm/sec)   p_kst 5.524862e-07   p_cons 5.524862e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.026855e-06	k: 0	n:1820000
Cons ci ratio: 2.771856e+00	ci left: 1.391088e-08	ci right 3.061339e-06	k: 1	n:1820000
KS ci ratio: 2.771856e+00	ci left: 1.391088e-08	ci right 3.061339e-06	k: 1	n:1820000
TP53   1820000 perm   3311 sec   (550 perm/sec)   p_kst 5.494505e-07   p_cons 5.494505e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.015779e-06	k: 0	n:1830000
Cons ci ratio: 2.771856e+00	ci left: 1.383487e-08	ci right 3.044610e-06	k: 1	n:1830000
KS ci ratio: 2.771856e+00	ci left: 1.383487e-08	ci right 3.044610e-06	k: 1	n:1830000
TP53   1830000 perm   3338 sec   (548 perm/sec)   p_kst 5.464481e-07   p_cons 5.464481e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.004824e-06	k: 0	n:1840000
Cons ci ratio: 2.771856e+00	ci left: 1.375968e-08	ci right 3.028063e-06	k: 1	n:1840000
KS ci ratio: 2.771856e+00	ci left: 1.375968e-08	ci right 3.028063e-06	k: 1	n:1840000
TP53   1840000 perm   3365 sec   (547 perm/sec)   p_kst 5.434783e-07   p_cons 5.434783e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.993987e-06	k: 0	n:1850000
Cons ci ratio: 2.771856e+00	ci left: 1.368530e-08	ci right 3.011695e-06	k: 1	n:1850000
KS ci ratio: 2.771856e+00	ci left: 1.368530e-08	ci right 3.011695e-06	k: 1	n:1850000
TP53   1850000 perm   3392 sec   (545 perm/sec)   p_kst 5.405405e-07   p_cons 5.405405e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.983267e-06	k: 0	n:1860000
Cons ci ratio: 2.771856e+00	ci left: 1.361172e-08	ci right 2.995504e-06	k: 1	n:1860000
KS ci ratio: 2.771856e+00	ci left: 1.361172e-08	ci right 2.995504e-06	k: 1	n:1860000
TP53   1860000 perm   3419 sec   (544 perm/sec)   p_kst 5.376344e-07   p_cons 5.376344e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.972661e-06	k: 0	n:1870000
Cons ci ratio: 2.771856e+00	ci left: 1.353893e-08	ci right 2.979485e-06	k: 1	n:1870000
KS ci ratio: 2.771856e+00	ci left: 1.353893e-08	ci right 2.979485e-06	k: 1	n:1870000
TP53   1870000 perm   3446 sec   (543 perm/sec)   p_kst 5.347594e-07   p_cons 5.347594e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.962168e-06	k: 0	n:1880000
Cons ci ratio: 2.771856e+00	ci left: 1.346692e-08	ci right 2.963636e-06	k: 1	n:1880000
KS ci ratio: 2.771856e+00	ci left: 1.346692e-08	ci right 2.963636e-06	k: 1	n:1880000
TP53   1880000 perm   3473 sec   (541 perm/sec)   p_kst 5.319149e-07   p_cons 5.319149e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.951786e-06	k: 0	n:1890000
Cons ci ratio: 2.771856e+00	ci left: 1.339567e-08	ci right 2.947956e-06	k: 1	n:1890000
KS ci ratio: 2.771856e+00	ci left: 1.339567e-08	ci right 2.947956e-06	k: 1	n:1890000
TP53   1890000 perm   3500 sec   (540 perm/sec)   p_kst 5.291005e-07   p_cons 5.291005e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.941514e-06	k: 0	n:1900000
Cons ci ratio: 2.771856e+00	ci left: 1.332516e-08	ci right 2.932440e-06	k: 1	n:1900000
KS ci ratio: 2.771856e+00	ci left: 1.332516e-08	ci right 2.932440e-06	k: 1	n:1900000
TP53   1900000 perm   3527 sec   (539 perm/sec)   p_kst 5.263158e-07   p_cons 5.263158e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.931349e-06	k: 0	n:1910000
Cons ci ratio: 2.771856e+00	ci left: 1.325540e-08	ci right 2.917087e-06	k: 1	n:1910000
KS ci ratio: 2.771856e+00	ci left: 1.325540e-08	ci right 2.917087e-06	k: 1	n:1910000
TP53   1910000 perm   3555 sec   (537 perm/sec)   p_kst 5.235602e-07   p_cons 5.235602e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.921290e-06	k: 0	n:1920000
Cons ci ratio: 2.771856e+00	ci left: 1.318636e-08	ci right 2.901894e-06	k: 1	n:1920000
KS ci ratio: 2.771856e+00	ci left: 1.318636e-08	ci right 2.901894e-06	k: 1	n:1920000
TP53   1920000 perm   3582 sec   (536 perm/sec)   p_kst 5.208333e-07   p_cons 5.208333e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.911335e-06	k: 0	n:1930000
Cons ci ratio: 2.771856e+00	ci left: 1.311804e-08	ci right 2.886858e-06	k: 1	n:1930000
KS ci ratio: 2.771856e+00	ci left: 1.311804e-08	ci right 2.886858e-06	k: 1	n:1930000
TP53   1930000 perm   3609 sec   (535 perm/sec)   p_kst 5.181347e-07   p_cons 5.181347e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.901482e-06	k: 0	n:1940000
Cons ci ratio: 2.771856e+00	ci left: 1.305042e-08	ci right 2.871978e-06	k: 1	n:1940000
KS ci ratio: 2.771856e+00	ci left: 1.305042e-08	ci right 2.871978e-06	k: 1	n:1940000
TP53   1940000 perm   3637 sec   (533 perm/sec)   p_kst 5.154639e-07   p_cons 5.154639e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.891731e-06	k: 0	n:1950000
Cons ci ratio: 2.771856e+00	ci left: 1.298349e-08	ci right 2.857250e-06	k: 1	n:1950000
KS ci ratio: 2.771856e+00	ci left: 1.298349e-08	ci right 2.857250e-06	k: 1	n:1950000
TP53   1950000 perm   3664 sec   (532 perm/sec)   p_kst 5.128205e-07   p_cons 5.128205e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.882080e-06	k: 0	n:1960000
Cons ci ratio: 2.771856e+00	ci left: 1.291725e-08	ci right 2.842672e-06	k: 1	n:1960000
KS ci ratio: 2.771856e+00	ci left: 1.291725e-08	ci right 2.842672e-06	k: 1	n:1960000
TP53   1960000 perm   3692 sec   (531 perm/sec)   p_kst 5.102041e-07   p_cons 5.102041e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.872526e-06	k: 0	n:1970000
Cons ci ratio: 2.771856e+00	ci left: 1.285168e-08	ci right 2.828242e-06	k: 1	n:1970000
KS ci ratio: 2.771856e+00	ci left: 1.285168e-08	ci right 2.828242e-06	k: 1	n:1970000
TP53   1970000 perm   3719 sec   (530 perm/sec)   p_kst 5.076142e-07   p_cons 5.076142e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.863069e-06	k: 0	n:1980000
Cons ci ratio: 2.771856e+00	ci left: 1.278677e-08	ci right 2.813958e-06	k: 1	n:1980000
KS ci ratio: 2.771856e+00	ci left: 1.278677e-08	ci right 2.813958e-06	k: 1	n:1980000
TP53   1980000 perm   3746 sec   (529 perm/sec)   p_kst 5.050505e-07   p_cons 5.050505e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.853707e-06	k: 0	n:1990000
Cons ci ratio: 2.771856e+00	ci left: 1.272252e-08	ci right 2.799818e-06	k: 1	n:1990000
KS ci ratio: 2.771856e+00	ci left: 1.272252e-08	ci right 2.799818e-06	k: 1	n:1990000
TP53   1990000 perm   3774 sec   (527 perm/sec)   p_kst 5.025126e-07   p_cons 5.025126e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.844438e-06	k: 0	n:2000000
Cons ci ratio: 2.771857e+00	ci left: 1.265890e-08	ci right 2.785819e-06	k: 1	n:2000000
KS ci ratio: 2.771857e+00	ci left: 1.265890e-08	ci right 2.785819e-06	k: 1	n:2000000
TP53   2000000 perm   3801 sec   (526 perm/sec)   p_kst 5.000000e-07   p_cons 5.000000e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.835262e-06	k: 0	n:2010000
Cons ci ratio: 2.771857e+00	ci left: 1.259592e-08	ci right 2.771959e-06	k: 1	n:2010000
KS ci ratio: 2.771857e+00	ci left: 1.259592e-08	ci right 2.771959e-06	k: 1	n:2010000
TP53   2010000 perm   3829 sec   (525 perm/sec)   p_kst 4.975124e-07   p_cons 4.975124e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.826176e-06	k: 0	n:2020000
Cons ci ratio: 2.771857e+00	ci left: 1.253357e-08	ci right 2.758236e-06	k: 1	n:2020000
KS ci ratio: 2.771857e+00	ci left: 1.253357e-08	ci right 2.758236e-06	k: 1	n:2020000
TP53   2020000 perm   3857 sec   (524 perm/sec)   p_kst 4.950495e-07   p_cons 4.950495e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.817180e-06	k: 0	n:2030000
Cons ci ratio: 2.771857e+00	ci left: 1.247183e-08	ci right 2.744649e-06	k: 1	n:2030000
KS ci ratio: 2.771857e+00	ci left: 1.247183e-08	ci right 2.744649e-06	k: 1	n:2030000
TP53   2030000 perm   3885 sec   (522 perm/sec)   p_kst 4.926108e-07   p_cons 4.926108e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.808273e-06	k: 0	n:2040000
Cons ci ratio: 2.771857e+00	ci left: 1.241069e-08	ci right 2.731195e-06	k: 1	n:2040000
KS ci ratio: 2.771857e+00	ci left: 1.241069e-08	ci right 2.731195e-06	k: 1	n:2040000
TP53   2040000 perm   3913 sec   (521 perm/sec)   p_kst 4.901961e-07   p_cons 4.901961e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.799452e-06	k: 0	n:2050000
Cons ci ratio: 2.771857e+00	ci left: 1.235015e-08	ci right 2.717872e-06	k: 1	n:2050000
KS ci ratio: 2.771857e+00	ci left: 1.235015e-08	ci right 2.717872e-06	k: 1	n:2050000
TP53   2050000 perm   3941 sec   (520 perm/sec)   p_kst 4.878049e-07   p_cons 4.878049e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.790717e-06	k: 0	n:2060000
Cons ci ratio: 2.771857e+00	ci left: 1.229020e-08	ci right 2.704678e-06	k: 1	n:2060000
KS ci ratio: 2.771857e+00	ci left: 1.229020e-08	ci right 2.704678e-06	k: 1	n:2060000
TP53   2060000 perm   3970 sec   (519 perm/sec)   p_kst 4.854369e-07   p_cons 4.854369e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.782066e-06	k: 0	n:2070000
Cons ci ratio: 2.771857e+00	ci left: 1.223083e-08	ci right 2.691612e-06	k: 1	n:2070000
KS ci ratio: 2.771857e+00	ci left: 1.223083e-08	ci right 2.691612e-06	k: 1	n:2070000
TP53   2070000 perm   3998 sec   (518 perm/sec)   p_kst 4.830918e-07   p_cons 4.830918e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.773498e-06	k: 0	n:2080000
Cons ci ratio: 2.771857e+00	ci left: 1.217202e-08	ci right 2.678672e-06	k: 1	n:2080000
KS ci ratio: 2.771857e+00	ci left: 1.217202e-08	ci right 2.678672e-06	k: 1	n:2080000
TP53   2080000 perm   4027 sec   (517 perm/sec)   p_kst 4.807692e-07   p_cons 4.807692e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.765013e-06	k: 0	n:2090000
Cons ci ratio: 2.771857e+00	ci left: 1.211378e-08	ci right 2.665855e-06	k: 1	n:2090000
KS ci ratio: 2.771857e+00	ci left: 1.211378e-08	ci right 2.665855e-06	k: 1	n:2090000
TP53   2090000 perm   4055 sec   (515 perm/sec)   p_kst 4.784689e-07   p_cons 4.784689e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.756608e-06	k: 0	n:2100000
Cons ci ratio: 2.771857e+00	ci left: 1.205610e-08	ci right 2.653161e-06	k: 1	n:2100000
KS ci ratio: 2.771857e+00	ci left: 1.205610e-08	ci right 2.653161e-06	k: 1	n:2100000
TP53   2100000 perm   4083 sec   (514 perm/sec)   p_kst 4.761905e-07   p_cons 4.761905e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.748283e-06	k: 0	n:2110000
Cons ci ratio: 2.771857e+00	ci left: 1.199896e-08	ci right 2.640586e-06	k: 1	n:2110000
KS ci ratio: 2.771857e+00	ci left: 1.199896e-08	ci right 2.640586e-06	k: 1	n:2110000
TP53   2110000 perm   4112 sec   (513 perm/sec)   p_kst 4.739336e-07   p_cons 4.739336e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.740036e-06	k: 0	n:2120000
Cons ci ratio: 2.771857e+00	ci left: 1.194236e-08	ci right 2.628131e-06	k: 1	n:2120000
KS ci ratio: 2.771857e+00	ci left: 1.194236e-08	ci right 2.628131e-06	k: 1	n:2120000
TP53   2120000 perm   4140 sec   (512 perm/sec)   p_kst 4.716981e-07   p_cons 4.716981e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.731867e-06	k: 0	n:2130000
Cons ci ratio: 2.771857e+00	ci left: 1.188629e-08	ci right 2.615792e-06	k: 1	n:2130000
KS ci ratio: 2.771857e+00	ci left: 1.188629e-08	ci right 2.615792e-06	k: 1	n:2130000
TP53   2130000 perm   4169 sec   (511 perm/sec)   p_kst 4.694836e-07   p_cons 4.694836e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.723774e-06	k: 0	n:2140000
Cons ci ratio: 2.771857e+00	ci left: 1.183075e-08	ci right 2.603569e-06	k: 1	n:2140000
KS ci ratio: 2.771857e+00	ci left: 1.183075e-08	ci right 2.603569e-06	k: 1	n:2140000
TP53   2140000 perm   4198 sec   (510 perm/sec)   p_kst 4.672897e-07   p_cons 4.672897e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.715756e-06	k: 0	n:2150000
Cons ci ratio: 2.771857e+00	ci left: 1.177572e-08	ci right 2.591459e-06	k: 1	n:2150000
KS ci ratio: 2.771857e+00	ci left: 1.177572e-08	ci right 2.591459e-06	k: 1	n:2150000
TP53   2150000 perm   4227 sec   (509 perm/sec)   p_kst 4.651163e-07   p_cons 4.651163e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.707813e-06	k: 0	n:2160000
Cons ci ratio: 2.771857e+00	ci left: 1.172121e-08	ci right 2.579462e-06	k: 1	n:2160000
KS ci ratio: 2.771857e+00	ci left: 1.172121e-08	ci right 2.579462e-06	k: 1	n:2160000
TP53   2160000 perm   4257 sec   (507 perm/sec)   p_kst 4.629630e-07   p_cons 4.629630e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.699943e-06	k: 0	n:2170000
Cons ci ratio: 2.771857e+00	ci left: 1.166719e-08	ci right 2.567575e-06	k: 1	n:2170000
KS ci ratio: 2.771857e+00	ci left: 1.166719e-08	ci right 2.567575e-06	k: 1	n:2170000
TP53   2170000 perm   4286 sec   (506 perm/sec)   p_kst 4.608295e-07   p_cons 4.608295e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.692145e-06	k: 0	n:2180000
Cons ci ratio: 2.771857e+00	ci left: 1.161367e-08	ci right 2.555797e-06	k: 1	n:2180000
KS ci ratio: 2.771857e+00	ci left: 1.161367e-08	ci right 2.555797e-06	k: 1	n:2180000
TP53   2180000 perm   4316 sec   (505 perm/sec)   p_kst 4.587156e-07   p_cons 4.587156e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.684418e-06	k: 0	n:2190000
Cons ci ratio: 2.771857e+00	ci left: 1.156064e-08	ci right 2.544127e-06	k: 1	n:2190000
KS ci ratio: 2.771857e+00	ci left: 1.156064e-08	ci right 2.544127e-06	k: 1	n:2190000
TP53   2190000 perm   4345 sec   (504 perm/sec)   p_kst 4.566210e-07   p_cons 4.566210e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.676762e-06	k: 0	n:2200000
Cons ci ratio: 2.771857e+00	ci left: 1.150809e-08	ci right 2.532563e-06	k: 1	n:2200000
KS ci ratio: 2.771857e+00	ci left: 1.150809e-08	ci right 2.532563e-06	k: 1	n:2200000
TP53   2200000 perm   4375 sec   (503 perm/sec)   p_kst 4.545455e-07   p_cons 4.545455e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.669175e-06	k: 0	n:2210000
Cons ci ratio: 2.771857e+00	ci left: 1.145602e-08	ci right 2.521103e-06	k: 1	n:2210000
KS ci ratio: 2.771857e+00	ci left: 1.145602e-08	ci right 2.521103e-06	k: 1	n:2210000
TP53   2210000 perm   4404 sec   (502 perm/sec)   p_kst 4.524887e-07   p_cons 4.524887e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.661656e-06	k: 0	n:2220000
Cons ci ratio: 2.771857e+00	ci left: 1.140442e-08	ci right 2.509747e-06	k: 1	n:2220000
KS ci ratio: 2.771857e+00	ci left: 1.140442e-08	ci right 2.509747e-06	k: 1	n:2220000
TP53   2220000 perm   4434 sec   (501 perm/sec)   p_kst 4.504505e-07   p_cons 4.504505e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.654205e-06	k: 0	n:2230000
Cons ci ratio: 2.771857e+00	ci left: 1.135328e-08	ci right 2.498492e-06	k: 1	n:2230000
KS ci ratio: 2.771857e+00	ci left: 1.135328e-08	ci right 2.498492e-06	k: 1	n:2230000
TP53   2230000 perm   4464 sec   (500 perm/sec)   p_kst 4.484305e-07   p_cons 4.484305e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.646820e-06	k: 0	n:2240000
Cons ci ratio: 2.771857e+00	ci left: 1.130259e-08	ci right 2.487338e-06	k: 1	n:2240000
KS ci ratio: 2.771857e+00	ci left: 1.130259e-08	ci right 2.487338e-06	k: 1	n:2240000
TP53   2240000 perm   4494 sec   (498 perm/sec)   p_kst 4.464286e-07   p_cons 4.464286e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.639501e-06	k: 0	n:2250000
Cons ci ratio: 2.771857e+00	ci left: 1.125236e-08	ci right 2.476283e-06	k: 1	n:2250000
KS ci ratio: 2.771857e+00	ci left: 1.125236e-08	ci right 2.476283e-06	k: 1	n:2250000
TP53   2250000 perm   4524 sec   (497 perm/sec)   p_kst 4.444444e-07   p_cons 4.444444e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.632246e-06	k: 0	n:2260000
Cons ci ratio: 2.771857e+00	ci left: 1.120257e-08	ci right 2.465326e-06	k: 1	n:2260000
KS ci ratio: 2.771857e+00	ci left: 1.120257e-08	ci right 2.465326e-06	k: 1	n:2260000
TP53   2260000 perm   4554 sec   (496 perm/sec)   p_kst 4.424779e-07   p_cons 4.424779e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.625056e-06	k: 0	n:2270000
Cons ci ratio: 2.771857e+00	ci left: 1.115322e-08	ci right 2.454466e-06	k: 1	n:2270000
KS ci ratio: 2.771857e+00	ci left: 1.115322e-08	ci right 2.454466e-06	k: 1	n:2270000
TP53   2270000 perm   4584 sec   (495 perm/sec)   p_kst 4.405286e-07   p_cons 4.405286e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.617928e-06	k: 0	n:2280000
Cons ci ratio: 2.771857e+00	ci left: 1.110430e-08	ci right 2.443701e-06	k: 1	n:2280000
KS ci ratio: 2.771857e+00	ci left: 1.110430e-08	ci right 2.443701e-06	k: 1	n:2280000
TP53   2280000 perm   4614 sec   (494 perm/sec)   p_kst 4.385965e-07   p_cons 4.385965e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.610863e-06	k: 0	n:2290000
Cons ci ratio: 2.771857e+00	ci left: 1.105581e-08	ci right 2.433030e-06	k: 1	n:2290000
KS ci ratio: 2.771857e+00	ci left: 1.105581e-08	ci right 2.433030e-06	k: 1	n:2290000
TP53   2290000 perm   4644 sec   (493 perm/sec)   p_kst 4.366812e-07   p_cons 4.366812e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.603859e-06	k: 0	n:2300000
Cons ci ratio: 2.771857e+00	ci left: 1.100774e-08	ci right 2.422451e-06	k: 1	n:2300000
KS ci ratio: 2.771857e+00	ci left: 1.100774e-08	ci right 2.422451e-06	k: 1	n:2300000
TP53   2300000 perm   4675 sec   (492 perm/sec)   p_kst 4.347826e-07   p_cons 4.347826e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.596916e-06	k: 0	n:2310000
Cons ci ratio: 2.771857e+00	ci left: 1.096009e-08	ci right 2.411964e-06	k: 1	n:2310000
KS ci ratio: 2.771857e+00	ci left: 1.096009e-08	ci right 2.411964e-06	k: 1	n:2310000
TP53   2310000 perm   4705 sec   (491 perm/sec)   p_kst 4.329004e-07   p_cons 4.329004e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.590033e-06	k: 0	n:2320000
Cons ci ratio: 2.771857e+00	ci left: 1.091285e-08	ci right 2.401568e-06	k: 1	n:2320000
KS ci ratio: 2.771857e+00	ci left: 1.091285e-08	ci right 2.401568e-06	k: 1	n:2320000
TP53   2320000 perm   4736 sec   (490 perm/sec)   p_kst 4.310345e-07   p_cons 4.310345e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.583209e-06	k: 0	n:2330000
Cons ci ratio: 2.771857e+00	ci left: 1.086601e-08	ci right 2.391261e-06	k: 1	n:2330000
KS ci ratio: 2.771857e+00	ci left: 1.086601e-08	ci right 2.391261e-06	k: 1	n:2330000
TP53   2330000 perm   4767 sec   (489 perm/sec)   p_kst 4.291845e-07   p_cons 4.291845e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.576443e-06	k: 0	n:2340000
Cons ci ratio: 2.771857e+00	ci left: 1.081958e-08	ci right 2.381042e-06	k: 1	n:2340000
KS ci ratio: 2.771857e+00	ci left: 1.081958e-08	ci right 2.381042e-06	k: 1	n:2340000
TP53   2340000 perm   4798 sec   (488 perm/sec)   p_kst 4.273504e-07   p_cons 4.273504e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.569735e-06	k: 0	n:2350000
Cons ci ratio: 2.771857e+00	ci left: 1.077354e-08	ci right 2.370910e-06	k: 1	n:2350000
KS ci ratio: 2.771857e+00	ci left: 1.077354e-08	ci right 2.370910e-06	k: 1	n:2350000
TP53   2350000 perm   4828 sec   (487 perm/sec)   p_kst 4.255319e-07   p_cons 4.255319e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.563083e-06	k: 0	n:2360000
Cons ci ratio: 2.771857e+00	ci left: 1.072788e-08	ci right 2.360864e-06	k: 1	n:2360000
KS ci ratio: 2.771857e+00	ci left: 1.072788e-08	ci right 2.360864e-06	k: 1	n:2360000
TP53   2360000 perm   4859 sec   (486 perm/sec)   p_kst 4.237288e-07   p_cons 4.237288e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.556488e-06	k: 0	n:2370000
Cons ci ratio: 2.771857e+00	ci left: 1.068262e-08	ci right 2.350902e-06	k: 1	n:2370000
KS ci ratio: 2.771857e+00	ci left: 1.068262e-08	ci right 2.350902e-06	k: 1	n:2370000
TP53   2370000 perm   4890 sec   (485 perm/sec)   p_kst 4.219409e-07   p_cons 4.219409e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.549948e-06	k: 0	n:2380000
Cons ci ratio: 2.771857e+00	ci left: 1.063773e-08	ci right 2.341024e-06	k: 1	n:2380000
KS ci ratio: 2.771857e+00	ci left: 1.063773e-08	ci right 2.341024e-06	k: 1	n:2380000
TP53   2380000 perm   4922 sec   (484 perm/sec)   p_kst 4.201681e-07   p_cons 4.201681e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.543463e-06	k: 0	n:2390000
Cons ci ratio: 2.771857e+00	ci left: 1.059323e-08	ci right 2.331229e-06	k: 1	n:2390000
KS ci ratio: 2.771857e+00	ci left: 1.059323e-08	ci right 2.331229e-06	k: 1	n:2390000
TP53   2390000 perm   4953 sec   (483 perm/sec)   p_kst 4.184100e-07   p_cons 4.184100e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.537032e-06	k: 0	n:2400000
Cons ci ratio: 2.771857e+00	ci left: 1.054909e-08	ci right 2.321516e-06	k: 1	n:2400000
KS ci ratio: 2.771857e+00	ci left: 1.054909e-08	ci right 2.321516e-06	k: 1	n:2400000
TP53   2400000 perm   4984 sec   (482 perm/sec)   p_kst 4.166667e-07   p_cons 4.166667e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.530654e-06	k: 0	n:2410000
Cons ci ratio: 2.771857e+00	ci left: 1.050531e-08	ci right 2.311883e-06	k: 1	n:2410000
KS ci ratio: 2.771857e+00	ci left: 1.050531e-08	ci right 2.311883e-06	k: 1	n:2410000
TP53   2410000 perm   5015 sec   (481 perm/sec)   p_kst 4.149378e-07   p_cons 4.149378e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.524329e-06	k: 0	n:2420000
Cons ci ratio: 2.771857e+00	ci left: 1.046190e-08	ci right 2.302330e-06	k: 1	n:2420000
KS ci ratio: 2.771857e+00	ci left: 1.046190e-08	ci right 2.302330e-06	k: 1	n:2420000
TP53   2420000 perm   5047 sec   (479 perm/sec)   p_kst 4.132231e-07   p_cons 4.132231e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.518056e-06	k: 0	n:2430000
Cons ci ratio: 2.771857e+00	ci left: 1.041885e-08	ci right 2.292855e-06	k: 1	n:2430000
KS ci ratio: 2.771857e+00	ci left: 1.041885e-08	ci right 2.292855e-06	k: 1	n:2430000
TP53   2430000 perm   5079 sec   (478 perm/sec)   p_kst 4.115226e-07   p_cons 4.115226e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.511835e-06	k: 0	n:2440000
Cons ci ratio: 2.771857e+00	ci left: 1.037615e-08	ci right 2.283458e-06	k: 1	n:2440000
KS ci ratio: 2.771857e+00	ci left: 1.037615e-08	ci right 2.283458e-06	k: 1	n:2440000
TP53   2440000 perm   5110 sec   (477 perm/sec)   p_kst 4.098361e-07   p_cons 4.098361e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.505664e-06	k: 0	n:2450000
Cons ci ratio: 2.771857e+00	ci left: 1.033380e-08	ci right 2.274138e-06	k: 1	n:2450000
KS ci ratio: 2.771857e+00	ci left: 1.033380e-08	ci right 2.274138e-06	k: 1	n:2450000
TP53   2450000 perm   5142 sec   (476 perm/sec)   p_kst 4.081633e-07   p_cons 4.081633e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.499543e-06	k: 0	n:2460000
Cons ci ratio: 2.771857e+00	ci left: 1.029179e-08	ci right 2.264894e-06	k: 1	n:2460000
KS ci ratio: 2.771857e+00	ci left: 1.029179e-08	ci right 2.264894e-06	k: 1	n:2460000
TP53   2460000 perm   5173 sec   (476 perm/sec)   p_kst 4.065041e-07   p_cons 4.065041e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.493472e-06	k: 0	n:2470000
Cons ci ratio: 2.771857e+00	ci left: 1.025012e-08	ci right 2.255724e-06	k: 1	n:2470000
KS ci ratio: 2.771857e+00	ci left: 1.025012e-08	ci right 2.255724e-06	k: 1	n:2470000
TP53   2470000 perm   5205 sec   (475 perm/sec)   p_kst 4.048583e-07   p_cons 4.048583e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.487450e-06	k: 0	n:2480000
Cons ci ratio: 2.771857e+00	ci left: 1.020879e-08	ci right 2.246628e-06	k: 1	n:2480000
KS ci ratio: 2.771857e+00	ci left: 1.020879e-08	ci right 2.246628e-06	k: 1	n:2480000
TP53   2480000 perm   5237 sec   (474 perm/sec)   p_kst 4.032258e-07   p_cons 4.032258e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.481477e-06	k: 0	n:2490000
Cons ci ratio: 2.771857e+00	ci left: 1.016779e-08	ci right 2.237606e-06	k: 1	n:2490000
KS ci ratio: 2.771857e+00	ci left: 1.016779e-08	ci right 2.237606e-06	k: 1	n:2490000
TP53   2490000 perm   5269 sec   (473 perm/sec)   p_kst 4.016064e-07   p_cons 4.016064e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.475551e-06	k: 0	n:2500000
Cons ci ratio: 2.771857e+00	ci left: 1.012712e-08	ci right 2.228655e-06	k: 1	n:2500000
KS ci ratio: 2.771857e+00	ci left: 1.012712e-08	ci right 2.228655e-06	k: 1	n:2500000
TP53   2500000 perm   5302 sec   (472 perm/sec)   p_kst 4.000000e-07   p_cons 4.000000e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.469672e-06	k: 0	n:2510000
Cons ci ratio: 2.771857e+00	ci left: 1.008678e-08	ci right 2.219776e-06	k: 1	n:2510000
KS ci ratio: 2.771857e+00	ci left: 1.008678e-08	ci right 2.219776e-06	k: 1	n:2510000
TP53   2510000 perm   5335 sec   (470 perm/sec)   p_kst 3.984064e-07   p_cons 3.984064e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.463840e-06	k: 0	n:2520000
Cons ci ratio: 2.771857e+00	ci left: 1.004675e-08	ci right 2.210968e-06	k: 1	n:2520000
KS ci ratio: 2.771857e+00	ci left: 1.004675e-08	ci right 2.210968e-06	k: 1	n:2520000
TP53   2520000 perm   5368 sec   (469 perm/sec)   p_kst 3.968254e-07   p_cons 3.968254e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.458054e-06	k: 0	n:2530000
Cons ci ratio: 2.771857e+00	ci left: 1.000704e-08	ci right 2.202229e-06	k: 1	n:2530000
KS ci ratio: 2.771857e+00	ci left: 1.000704e-08	ci right 2.202229e-06	k: 1	n:2530000
TP53   2530000 perm   5401 sec   (468 perm/sec)   p_kst 3.952569e-07   p_cons 3.952569e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.452314e-06	k: 0	n:2540000
Cons ci ratio: 2.771857e+00	ci left: 9.967641e-09	ci right 2.193558e-06	k: 1	n:2540000
KS ci ratio: 2.771857e+00	ci left: 9.967641e-09	ci right 2.193558e-06	k: 1	n:2540000
TP53   2540000 perm   5433 sec   (467 perm/sec)   p_kst 3.937008e-07   p_cons 3.937008e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.446618e-06	k: 0	n:2550000
Cons ci ratio: 2.771857e+00	ci left: 9.928552e-09	ci right 2.184956e-06	k: 1	n:2550000
KS ci ratio: 2.771857e+00	ci left: 9.928552e-09	ci right 2.184956e-06	k: 1	n:2550000
TP53   2550000 perm   5467 sec   (466 perm/sec)   p_kst 3.921569e-07   p_cons 3.921569e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.440968e-06	k: 0	n:2560000
Cons ci ratio: 2.771857e+00	ci left: 9.889769e-09	ci right 2.176421e-06	k: 1	n:2560000
KS ci ratio: 2.771857e+00	ci left: 9.889769e-09	ci right 2.176421e-06	k: 1	n:2560000
TP53   2560000 perm   5500 sec   (465 perm/sec)   p_kst 3.906250e-07   p_cons 3.906250e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.435361e-06	k: 0	n:2570000
Cons ci ratio: 2.771857e+00	ci left: 9.851287e-09	ci right 2.167953e-06	k: 1	n:2570000
KS ci ratio: 2.771857e+00	ci left: 9.851287e-09	ci right 2.167953e-06	k: 1	n:2570000
TP53   2570000 perm   5533 sec   (464 perm/sec)   p_kst 3.891051e-07   p_cons 3.891051e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.429797e-06	k: 0	n:2580000
Cons ci ratio: 2.771857e+00	ci left: 9.813104e-09	ci right 2.159550e-06	k: 1	n:2580000
KS ci ratio: 2.771857e+00	ci left: 9.813104e-09	ci right 2.159550e-06	k: 1	n:2580000
TP53   2580000 perm   5567 sec   (463 perm/sec)   p_kst 3.875969e-07   p_cons 3.875969e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.424277e-06	k: 0	n:2590000
Cons ci ratio: 2.771857e+00	ci left: 9.775216e-09	ci right 2.151212e-06	k: 1	n:2590000
KS ci ratio: 2.771857e+00	ci left: 9.775216e-09	ci right 2.151212e-06	k: 1	n:2590000
TP53   2590000 perm   5600 sec   (462 perm/sec)   p_kst 3.861004e-07   p_cons 3.861004e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.418799e-06	k: 0	n:2600000
Cons ci ratio: 2.771857e+00	ci left: 9.737618e-09	ci right 2.142938e-06	k: 1	n:2600000
KS ci ratio: 2.771857e+00	ci left: 9.737618e-09	ci right 2.142938e-06	k: 1	n:2600000
TP53   2600000 perm   5633 sec   (462 perm/sec)   p_kst 3.846154e-07   p_cons 3.846154e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.413363e-06	k: 0	n:2610000
Cons ci ratio: 2.771857e+00	ci left: 9.700310e-09	ci right 2.134727e-06	k: 1	n:2610000
KS ci ratio: 2.771857e+00	ci left: 9.700310e-09	ci right 2.134727e-06	k: 1	n:2610000
TP53   2610000 perm   5667 sec   (461 perm/sec)   p_kst 3.831418e-07   p_cons 3.831418e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.407968e-06	k: 0	n:2620000
Cons ci ratio: 2.771857e+00	ci left: 9.663285e-09	ci right 2.126580e-06	k: 1	n:2620000
KS ci ratio: 2.771857e+00	ci left: 9.663285e-09	ci right 2.126580e-06	k: 1	n:2620000
TP53   2620000 perm   5700 sec   (460 perm/sec)   p_kst 3.816794e-07   p_cons 3.816794e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.402615e-06	k: 0	n:2630000
Cons ci ratio: 2.771857e+00	ci left: 9.626543e-09	ci right 2.118494e-06	k: 1	n:2630000
KS ci ratio: 2.771857e+00	ci left: 9.626543e-09	ci right 2.118494e-06	k: 1	n:2630000
TP53   2630000 perm   5734 sec   (459 perm/sec)   p_kst 3.802281e-07   p_cons 3.802281e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.397302e-06	k: 0	n:2640000
Cons ci ratio: 2.771857e+00	ci left: 9.590079e-09	ci right 2.110469e-06	k: 1	n:2640000
KS ci ratio: 2.771857e+00	ci left: 9.590079e-09	ci right 2.110469e-06	k: 1	n:2640000
TP53   2640000 perm   5769 sec   (458 perm/sec)   p_kst 3.787879e-07   p_cons 3.787879e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.392029e-06	k: 0	n:2650000
Cons ci ratio: 2.771857e+00	ci left: 9.553890e-09	ci right 2.102505e-06	k: 1	n:2650000
KS ci ratio: 2.771857e+00	ci left: 9.553890e-09	ci right 2.102505e-06	k: 1	n:2650000
TP53   2650000 perm   5803 sec   (457 perm/sec)   p_kst 3.773585e-07   p_cons 3.773585e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.386796e-06	k: 0	n:2660000
Cons ci ratio: 2.771857e+00	ci left: 9.517973e-09	ci right 2.094601e-06	k: 1	n:2660000
KS ci ratio: 2.771857e+00	ci left: 9.517973e-09	ci right 2.094601e-06	k: 1	n:2660000
TP53   2660000 perm   5836 sec   (456 perm/sec)   p_kst 3.759398e-07   p_cons 3.759398e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.381602e-06	k: 0	n:2670000
Cons ci ratio: 2.771857e+00	ci left: 9.482325e-09	ci right 2.086756e-06	k: 1	n:2670000
KS ci ratio: 2.771857e+00	ci left: 9.482325e-09	ci right 2.086756e-06	k: 1	n:2670000
TP53   2670000 perm   5870 sec   (455 perm/sec)   p_kst 3.745318e-07   p_cons 3.745318e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.376447e-06	k: 0	n:2680000
Cons ci ratio: 2.771857e+00	ci left: 9.446943e-09	ci right 2.078970e-06	k: 1	n:2680000
KS ci ratio: 2.771857e+00	ci left: 9.446943e-09	ci right 2.078970e-06	k: 1	n:2680000
TP53   2680000 perm   5904 sec   (454 perm/sec)   p_kst 3.731343e-07   p_cons 3.731343e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.371330e-06	k: 0	n:2690000
Cons ci ratio: 2.771857e+00	ci left: 9.411825e-09	ci right 2.071241e-06	k: 1	n:2690000
KS ci ratio: 2.771857e+00	ci left: 9.411825e-09	ci right 2.071241e-06	k: 1	n:2690000
TP53   2690000 perm   5938 sec   (453 perm/sec)   p_kst 3.717472e-07   p_cons 3.717472e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.366251e-06	k: 0	n:2700000
Cons ci ratio: 2.771857e+00	ci left: 9.376966e-09	ci right 2.063570e-06	k: 1	n:2700000
KS ci ratio: 2.771857e+00	ci left: 9.376966e-09	ci right 2.063570e-06	k: 1	n:2700000
TP53   2700000 perm   5971 sec   (452 perm/sec)   p_kst 3.703704e-07   p_cons 3.703704e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.361209e-06	k: 0	n:2710000
Cons ci ratio: 2.771857e+00	ci left: 9.342365e-09	ci right 2.055955e-06	k: 1	n:2710000
KS ci ratio: 2.771857e+00	ci left: 9.342365e-09	ci right 2.055955e-06	k: 1	n:2710000
TP53   2710000 perm   6005 sec   (451 perm/sec)   p_kst 3.690037e-07   p_cons 3.690037e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.356205e-06	k: 0	n:2720000
Cons ci ratio: 2.771857e+00	ci left: 9.308018e-09	ci right 2.048397e-06	k: 1	n:2720000
KS ci ratio: 2.771857e+00	ci left: 9.308018e-09	ci right 2.048397e-06	k: 1	n:2720000
TP53   2720000 perm   6039 sec   (450 perm/sec)   p_kst 3.676471e-07   p_cons 3.676471e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.351237e-06	k: 0	n:2730000
Cons ci ratio: 2.771857e+00	ci left: 9.273922e-09	ci right 2.040893e-06	k: 1	n:2730000
KS ci ratio: 2.771857e+00	ci left: 9.273922e-09	ci right 2.040893e-06	k: 1	n:2730000
TP53   2730000 perm   6073 sec   (449 perm/sec)   p_kst 3.663004e-07   p_cons 3.663004e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.346305e-06	k: 0	n:2740000
Cons ci ratio: 2.771857e+00	ci left: 9.240076e-09	ci right 2.033445e-06	k: 1	n:2740000
KS ci ratio: 2.771857e+00	ci left: 9.240076e-09	ci right 2.033445e-06	k: 1	n:2740000
TP53   2740000 perm   6108 sec   (449 perm/sec)   p_kst 3.649635e-07   p_cons 3.649635e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.341410e-06	k: 0	n:2750000
Cons ci ratio: 2.771857e+00	ci left: 9.206476e-09	ci right 2.026050e-06	k: 1	n:2750000
KS ci ratio: 2.771857e+00	ci left: 9.206476e-09	ci right 2.026050e-06	k: 1	n:2750000
TP53   2750000 perm   6142 sec   (448 perm/sec)   p_kst 3.636364e-07   p_cons 3.636364e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.336550e-06	k: 0	n:2760000
Cons ci ratio: 2.771857e+00	ci left: 9.173119e-09	ci right 2.018710e-06	k: 1	n:2760000
KS ci ratio: 2.771857e+00	ci left: 9.173119e-09	ci right 2.018710e-06	k: 1	n:2760000
TP53   2760000 perm   6176 sec   (447 perm/sec)   p_kst 3.623188e-07   p_cons 3.623188e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.331725e-06	k: 0	n:2770000
Cons ci ratio: 2.771857e+00	ci left: 9.140003e-09	ci right 2.011422e-06	k: 1	n:2770000
KS ci ratio: 2.771857e+00	ci left: 9.140003e-09	ci right 2.011422e-06	k: 1	n:2770000
TP53   2770000 perm   6211 sec   (446 perm/sec)   p_kst 3.610108e-07   p_cons 3.610108e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.326934e-06	k: 0	n:2780000
Cons ci ratio: 2.771857e+00	ci left: 9.107125e-09	ci right 2.004187e-06	k: 1	n:2780000
KS ci ratio: 2.771857e+00	ci left: 9.107125e-09	ci right 2.004187e-06	k: 1	n:2780000
TP53   2780000 perm   6246 sec   (445 perm/sec)   p_kst 3.597122e-07   p_cons 3.597122e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.322178e-06	k: 0	n:2790000
Cons ci ratio: 2.771857e+00	ci left: 9.074483e-09	ci right 1.997003e-06	k: 1	n:2790000
KS ci ratio: 2.771857e+00	ci left: 9.074483e-09	ci right 1.997003e-06	k: 1	n:2790000
TP53   2790000 perm   6281 sec   (444 perm/sec)   p_kst 3.584229e-07   p_cons 3.584229e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.317456e-06	k: 0	n:2800000
Cons ci ratio: 2.771857e+00	ci left: 9.042074e-09	ci right 1.989871e-06	k: 1	n:2800000
KS ci ratio: 2.771857e+00	ci left: 9.042074e-09	ci right 1.989871e-06	k: 1	n:2800000
TP53   2800000 perm   6316 sec   (443 perm/sec)   p_kst 3.571429e-07   p_cons 3.571429e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.312768e-06	k: 0	n:2810000
Cons ci ratio: 2.771857e+00	ci left: 9.009896e-09	ci right 1.982790e-06	k: 1	n:2810000
KS ci ratio: 2.771857e+00	ci left: 9.009896e-09	ci right 1.982790e-06	k: 1	n:2810000
TP53   2810000 perm   6351 sec   (442 perm/sec)   p_kst 3.558719e-07   p_cons 3.558719e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.308112e-06	k: 0	n:2820000
Cons ci ratio: 2.771857e+00	ci left: 8.977946e-09	ci right 1.975758e-06	k: 1	n:2820000
KS ci ratio: 2.771857e+00	ci left: 8.977946e-09	ci right 1.975758e-06	k: 1	n:2820000
TP53   2820000 perm   6386 sec   (442 perm/sec)   p_kst 3.546099e-07   p_cons 3.546099e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.303490e-06	k: 0	n:2830000
Cons ci ratio: 2.771857e+00	ci left: 8.946222e-09	ci right 1.968777e-06	k: 1	n:2830000
KS ci ratio: 2.771857e+00	ci left: 8.946222e-09	ci right 1.968777e-06	k: 1	n:2830000
TP53   2830000 perm   6421 sec   (441 perm/sec)   p_kst 3.533569e-07   p_cons 3.533569e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.298900e-06	k: 0	n:2840000
Cons ci ratio: 2.771857e+00	ci left: 8.914721e-09	ci right 1.961845e-06	k: 1	n:2840000
KS ci ratio: 2.771857e+00	ci left: 8.914721e-09	ci right 1.961845e-06	k: 1	n:2840000
TP53   2840000 perm   6456 sec   (440 perm/sec)   p_kst 3.521127e-07   p_cons 3.521127e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.294343e-06	k: 0	n:2850000
Cons ci ratio: 2.771857e+00	ci left: 8.883441e-09	ci right 1.954961e-06	k: 1	n:2850000
KS ci ratio: 2.771857e+00	ci left: 8.883441e-09	ci right 1.954961e-06	k: 1	n:2850000
TP53   2850000 perm   6492 sec   (439 perm/sec)   p_kst 3.508772e-07   p_cons 3.508772e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.289817e-06	k: 0	n:2860000
Cons ci ratio: 2.771857e+00	ci left: 8.852380e-09	ci right 1.948126e-06	k: 1	n:2860000
KS ci ratio: 2.771857e+00	ci left: 8.852380e-09	ci right 1.948126e-06	k: 1	n:2860000
TP53   2860000 perm   6527 sec   (438 perm/sec)   p_kst 3.496503e-07   p_cons 3.496503e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.285323e-06	k: 0	n:2870000
Cons ci ratio: 2.771857e+00	ci left: 8.821536e-09	ci right 1.941338e-06	k: 1	n:2870000
KS ci ratio: 2.771857e+00	ci left: 8.821536e-09	ci right 1.941338e-06	k: 1	n:2870000
TP53   2870000 perm   6562 sec   (437 perm/sec)   p_kst 3.484321e-07   p_cons 3.484321e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.280860e-06	k: 0	n:2880000
Cons ci ratio: 2.771857e+00	ci left: 8.790905e-09	ci right 1.934597e-06	k: 1	n:2880000
KS ci ratio: 2.771857e+00	ci left: 8.790905e-09	ci right 1.934597e-06	k: 1	n:2880000
TP53   2880000 perm   6598 sec   (437 perm/sec)   p_kst 3.472222e-07   p_cons 3.472222e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.276428e-06	k: 0	n:2890000
Cons ci ratio: 2.771857e+00	ci left: 8.760487e-09	ci right 1.927903e-06	k: 1	n:2890000
KS ci ratio: 2.771857e+00	ci left: 8.760487e-09	ci right 1.927903e-06	k: 1	n:2890000
TP53   2890000 perm   6634 sec   (436 perm/sec)   p_kst 3.460208e-07   p_cons 3.460208e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.272027e-06	k: 0	n:2900000
Cons ci ratio: 2.771857e+00	ci left: 8.730279e-09	ci right 1.921255e-06	k: 1	n:2900000
KS ci ratio: 2.771857e+00	ci left: 8.730279e-09	ci right 1.921255e-06	k: 1	n:2900000
TP53   2900000 perm   6670 sec   (435 perm/sec)   p_kst 3.448276e-07   p_cons 3.448276e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.267655e-06	k: 0	n:2910000
Cons ci ratio: 2.771857e+00	ci left: 8.700278e-09	ci right 1.914653e-06	k: 1	n:2910000
KS ci ratio: 2.771857e+00	ci left: 8.700278e-09	ci right 1.914653e-06	k: 1	n:2910000
TP53   2910000 perm   6705 sec   (434 perm/sec)   p_kst 3.436426e-07   p_cons 3.436426e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.263314e-06	k: 0	n:2920000
Cons ci ratio: 2.771857e+00	ci left: 8.670482e-09	ci right 1.908096e-06	k: 1	n:2920000
KS ci ratio: 2.771857e+00	ci left: 8.670482e-09	ci right 1.908096e-06	k: 1	n:2920000
TP53   2920000 perm   6741 sec   (433 perm/sec)   p_kst 3.424658e-07   p_cons 3.424658e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.259002e-06	k: 0	n:2930000
Cons ci ratio: 2.771857e+00	ci left: 8.640890e-09	ci right 1.901583e-06	k: 1	n:2930000
KS ci ratio: 2.771857e+00	ci left: 8.640890e-09	ci right 1.901583e-06	k: 1	n:2930000
TP53   2930000 perm   6777 sec   (432 perm/sec)   p_kst 3.412969e-07   p_cons 3.412969e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.254720e-06	k: 0	n:2940000
Cons ci ratio: 2.771857e+00	ci left: 8.611499e-09	ci right 1.895115e-06	k: 1	n:2940000
KS ci ratio: 2.771857e+00	ci left: 8.611499e-09	ci right 1.895115e-06	k: 1	n:2940000
TP53   2940000 perm   6813 sec   (432 perm/sec)   p_kst 3.401361e-07   p_cons 3.401361e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.250467e-06	k: 0	n:2950000
Cons ci ratio: 2.771857e+00	ci left: 8.582308e-09	ci right 1.888691e-06	k: 1	n:2950000
KS ci ratio: 2.771857e+00	ci left: 8.582308e-09	ci right 1.888691e-06	k: 1	n:2950000
TP53   2950000 perm   6850 sec   (431 perm/sec)   p_kst 3.389831e-07   p_cons 3.389831e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.246242e-06	k: 0	n:2960000
Cons ci ratio: 2.771857e+00	ci left: 8.553313e-09	ci right 1.882311e-06	k: 1	n:2960000
KS ci ratio: 2.771857e+00	ci left: 8.553313e-09	ci right 1.882311e-06	k: 1	n:2960000
TP53   2960000 perm   6886 sec   (430 perm/sec)   p_kst 3.378378e-07   p_cons 3.378378e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.242046e-06	k: 0	n:2970000
Cons ci ratio: 2.771857e+00	ci left: 8.524514e-09	ci right 1.875973e-06	k: 1	n:2970000
KS ci ratio: 2.771857e+00	ci left: 8.524514e-09	ci right 1.875973e-06	k: 1	n:2970000
TP53   2970000 perm   6922 sec   (429 perm/sec)   p_kst 3.367003e-07   p_cons 3.367003e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.237878e-06	k: 0	n:2980000
Cons ci ratio: 2.771857e+00	ci left: 8.495909e-09	ci right 1.869678e-06	k: 1	n:2980000
KS ci ratio: 2.771857e+00	ci left: 8.495909e-09	ci right 1.869678e-06	k: 1	n:2980000
TP53   2980000 perm   6959 sec   (428 perm/sec)   p_kst 3.355705e-07   p_cons 3.355705e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.233738e-06	k: 0	n:2990000
Cons ci ratio: 2.771857e+00	ci left: 8.467494e-09	ci right 1.863424e-06	k: 1	n:2990000
KS ci ratio: 2.771857e+00	ci left: 8.467494e-09	ci right 1.863424e-06	k: 1	n:2990000
TP53   2990000 perm   6995 sec   (427 perm/sec)   p_kst 3.344482e-07   p_cons 3.344482e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.229626e-06	k: 0	n:3000000
Cons ci ratio: 2.771857e+00	ci left: 8.439269e-09	ci right 1.857213e-06	k: 1	n:3000000
KS ci ratio: 2.771857e+00	ci left: 8.439269e-09	ci right 1.857213e-06	k: 1	n:3000000
TP53   3000000 perm   7031 sec   (427 perm/sec)   p_kst 3.333333e-07   p_cons 3.333333e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.225541e-06	k: 0	n:3010000
Cons ci ratio: 2.771857e+00	ci left: 8.411232e-09	ci right 1.851043e-06	k: 1	n:3010000
KS ci ratio: 2.771857e+00	ci left: 8.411232e-09	ci right 1.851043e-06	k: 1	n:3010000
TP53   3010000 perm   7068 sec   (426 perm/sec)   p_kst 3.322259e-07   p_cons 3.322259e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.221483e-06	k: 0	n:3020000
Cons ci ratio: 2.771857e+00	ci left: 8.383380e-09	ci right 1.844914e-06	k: 1	n:3020000
KS ci ratio: 2.771857e+00	ci left: 8.383380e-09	ci right 1.844914e-06	k: 1	n:3020000
TP53   3020000 perm   7105 sec   (425 perm/sec)   p_kst 3.311258e-07   p_cons 3.311258e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.217451e-06	k: 0	n:3030000
Cons ci ratio: 2.771857e+00	ci left: 8.355712e-09	ci right 1.838825e-06	k: 1	n:3030000
KS ci ratio: 2.771857e+00	ci left: 8.355712e-09	ci right 1.838825e-06	k: 1	n:3030000
TP53   3030000 perm   7142 sec   (424 perm/sec)   p_kst 3.300330e-07   p_cons 3.300330e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.213446e-06	k: 0	n:3040000
Cons ci ratio: 2.771857e+00	ci left: 8.328226e-09	ci right 1.832776e-06	k: 1	n:3040000
KS ci ratio: 2.771857e+00	ci left: 8.328226e-09	ci right 1.832776e-06	k: 1	n:3040000
TP53   3040000 perm   7179 sec   (423 perm/sec)   p_kst 3.289474e-07   p_cons 3.289474e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.209468e-06	k: 0	n:3050000
Cons ci ratio: 2.771857e+00	ci left: 8.300921e-09	ci right 1.826767e-06	k: 1	n:3050000
KS ci ratio: 2.771857e+00	ci left: 8.300921e-09	ci right 1.826767e-06	k: 1	n:3050000
TP53   3050000 perm   7216 sec   (423 perm/sec)   p_kst 3.278689e-07   p_cons 3.278689e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.205515e-06	k: 0	n:3060000
Cons ci ratio: 2.771857e+00	ci left: 8.273793e-09	ci right 1.820797e-06	k: 1	n:3060000
KS ci ratio: 2.771857e+00	ci left: 8.273793e-09	ci right 1.820797e-06	k: 1	n:3060000
TP53   3060000 perm   7253 sec   (422 perm/sec)   p_kst 3.267974e-07   p_cons 3.267974e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.201589e-06	k: 0	n:3070000
Cons ci ratio: 2.771857e+00	ci left: 8.246843e-09	ci right 1.814866e-06	k: 1	n:3070000
KS ci ratio: 2.771857e+00	ci left: 8.246843e-09	ci right 1.814866e-06	k: 1	n:3070000
TP53   3070000 perm   7290 sec   (421 perm/sec)   p_kst 3.257329e-07   p_cons 3.257329e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.197687e-06	k: 0	n:3080000
Cons ci ratio: 2.771857e+00	ci left: 8.220068e-09	ci right 1.808974e-06	k: 1	n:3080000
KS ci ratio: 2.771857e+00	ci left: 8.220068e-09	ci right 1.808974e-06	k: 1	n:3080000
TP53   3080000 perm   7328 sec   (420 perm/sec)   p_kst 3.246753e-07   p_cons 3.246753e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.193811e-06	k: 0	n:3090000
Cons ci ratio: 2.771857e+00	ci left: 8.193465e-09	ci right 1.803120e-06	k: 1	n:3090000
KS ci ratio: 2.771857e+00	ci left: 8.193465e-09	ci right 1.803120e-06	k: 1	n:3090000
TP53   3090000 perm   7365 sec   (420 perm/sec)   p_kst 3.236246e-07   p_cons 3.236246e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.189960e-06	k: 0	n:3100000
Cons ci ratio: 2.771857e+00	ci left: 8.167035e-09	ci right 1.797303e-06	k: 1	n:3100000
KS ci ratio: 2.771857e+00	ci left: 8.167035e-09	ci right 1.797303e-06	k: 1	n:3100000
TP53   3100000 perm   7402 sec   (419 perm/sec)   p_kst 3.225806e-07   p_cons 3.225806e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.186134e-06	k: 0	n:3110000
Cons ci ratio: 2.771857e+00	ci left: 8.140774e-09	ci right 1.791524e-06	k: 1	n:3110000
KS ci ratio: 2.771857e+00	ci left: 8.140774e-09	ci right 1.791524e-06	k: 1	n:3110000
TP53   3110000 perm   7439 sec   (418 perm/sec)   p_kst 3.215434e-07   p_cons 3.215434e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.182332e-06	k: 0	n:3120000
Cons ci ratio: 2.771857e+00	ci left: 8.114682e-09	ci right 1.785782e-06	k: 1	n:3120000
KS ci ratio: 2.771857e+00	ci left: 8.114682e-09	ci right 1.785782e-06	k: 1	n:3120000
TP53   3120000 perm   7477 sec   (417 perm/sec)   p_kst 3.205128e-07   p_cons 3.205128e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.178555e-06	k: 0	n:3130000
Cons ci ratio: 2.771857e+00	ci left: 8.088757e-09	ci right 1.780076e-06	k: 1	n:3130000
KS ci ratio: 2.771857e+00	ci left: 8.088757e-09	ci right 1.780076e-06	k: 1	n:3130000
TP53   3130000 perm   7514 sec   (417 perm/sec)   p_kst 3.194888e-07   p_cons 3.194888e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.174802e-06	k: 0	n:3140000
Cons ci ratio: 2.771857e+00	ci left: 8.062996e-09	ci right 1.774407e-06	k: 1	n:3140000
KS ci ratio: 2.771857e+00	ci left: 8.062996e-09	ci right 1.774407e-06	k: 1	n:3140000
TP53   3140000 perm   7553 sec   (416 perm/sec)   p_kst 3.184713e-07   p_cons 3.184713e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.171072e-06	k: 0	n:3150000
Cons ci ratio: 2.771857e+00	ci left: 8.037399e-09	ci right 1.768774e-06	k: 1	n:3150000
KS ci ratio: 2.771857e+00	ci left: 8.037399e-09	ci right 1.768774e-06	k: 1	n:3150000
TP53   3150000 perm   7592 sec   (415 perm/sec)   p_kst 3.174603e-07   p_cons 3.174603e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.167366e-06	k: 0	n:3160000
Cons ci ratio: 2.771857e+00	ci left: 8.011965e-09	ci right 1.763177e-06	k: 1	n:3160000
KS ci ratio: 2.771857e+00	ci left: 8.011965e-09	ci right 1.763177e-06	k: 1	n:3160000
TP53   3160000 perm   7630 sec   (414 perm/sec)   p_kst 3.164557e-07   p_cons 3.164557e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.163684e-06	k: 0	n:3170000
Cons ci ratio: 2.771857e+00	ci left: 7.986690e-09	ci right 1.757615e-06	k: 1	n:3170000
KS ci ratio: 2.771857e+00	ci left: 7.986690e-09	ci right 1.757615e-06	k: 1	n:3170000
TP53   3170000 perm   7668 sec   (413 perm/sec)   p_kst 3.154574e-07   p_cons 3.154574e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.160024e-06	k: 0	n:3180000
Cons ci ratio: 2.771857e+00	ci left: 7.961575e-09	ci right 1.752088e-06	k: 1	n:3180000
KS ci ratio: 2.771857e+00	ci left: 7.961575e-09	ci right 1.752088e-06	k: 1	n:3180000
TP53   3180000 perm   7706 sec   (413 perm/sec)   p_kst 3.144654e-07   p_cons 3.144654e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.156388e-06	k: 0	n:3190000
Cons ci ratio: 2.771857e+00	ci left: 7.936617e-09	ci right 1.746595e-06	k: 1	n:3190000
KS ci ratio: 2.771857e+00	ci left: 7.936617e-09	ci right 1.746595e-06	k: 1	n:3190000
TP53   3190000 perm   7744 sec   (412 perm/sec)   p_kst 3.134796e-07   p_cons 3.134796e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.152774e-06	k: 0	n:3200000
Cons ci ratio: 2.771857e+00	ci left: 7.911815e-09	ci right 1.741137e-06	k: 1	n:3200000
KS ci ratio: 2.771857e+00	ci left: 7.911815e-09	ci right 1.741137e-06	k: 1	n:3200000
TP53   3200000 perm   7782 sec   (411 perm/sec)   p_kst 3.125000e-07   p_cons 3.125000e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.149183e-06	k: 0	n:3210000
Cons ci ratio: 2.771857e+00	ci left: 7.887168e-09	ci right 1.735713e-06	k: 1	n:3210000
KS ci ratio: 2.771857e+00	ci left: 7.887168e-09	ci right 1.735713e-06	k: 1	n:3210000
TP53   3210000 perm   7820 sec   (410 perm/sec)   p_kst 3.115265e-07   p_cons 3.115265e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.145614e-06	k: 0	n:3220000
Cons ci ratio: 2.771857e+00	ci left: 7.862673e-09	ci right 1.730323e-06	k: 1	n:3220000
KS ci ratio: 2.771857e+00	ci left: 7.862673e-09	ci right 1.730323e-06	k: 1	n:3220000
TP53   3220000 perm   7859 sec   (410 perm/sec)   p_kst 3.105590e-07   p_cons 3.105590e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.142067e-06	k: 0	n:3230000
Cons ci ratio: 2.771857e+00	ci left: 7.838331e-09	ci right 1.724966e-06	k: 1	n:3230000
KS ci ratio: 2.771857e+00	ci left: 7.838331e-09	ci right 1.724966e-06	k: 1	n:3230000
TP53   3230000 perm   7897 sec   (409 perm/sec)   p_kst 3.095975e-07   p_cons 3.095975e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.138542e-06	k: 0	n:3240000
Cons ci ratio: 2.771857e+00	ci left: 7.814138e-09	ci right 1.719642e-06	k: 1	n:3240000
KS ci ratio: 2.771857e+00	ci left: 7.814138e-09	ci right 1.719642e-06	k: 1	n:3240000
TP53   3240000 perm   7937 sec   (408 perm/sec)   p_kst 3.086420e-07   p_cons 3.086420e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.135039e-06	k: 0	n:3250000
Cons ci ratio: 2.771857e+00	ci left: 7.790095e-09	ci right 1.714351e-06	k: 1	n:3250000
KS ci ratio: 2.771857e+00	ci left: 7.790095e-09	ci right 1.714351e-06	k: 1	n:3250000
TP53   3250000 perm   7975 sec   (408 perm/sec)   p_kst 3.076923e-07   p_cons 3.076923e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.131557e-06	k: 0	n:3260000
Cons ci ratio: 2.771857e+00	ci left: 7.766199e-09	ci right 1.709092e-06	k: 1	n:3260000
KS ci ratio: 2.771857e+00	ci left: 7.766199e-09	ci right 1.709092e-06	k: 1	n:3260000
TP53   3260000 perm   8014 sec   (407 perm/sec)   p_kst 3.067485e-07   p_cons 3.067485e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.128097e-06	k: 0	n:3270000
Cons ci ratio: 2.771857e+00	ci left: 7.742449e-09	ci right 1.703865e-06	k: 1	n:3270000
KS ci ratio: 2.771857e+00	ci left: 7.742449e-09	ci right 1.703865e-06	k: 1	n:3270000
TP53   3270000 perm   8053 sec   (406 perm/sec)   p_kst 3.058104e-07   p_cons 3.058104e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.124658e-06	k: 0	n:3280000
Cons ci ratio: 2.771857e+00	ci left: 7.718844e-09	ci right 1.698671e-06	k: 1	n:3280000
KS ci ratio: 2.771857e+00	ci left: 7.718844e-09	ci right 1.698671e-06	k: 1	n:3280000
TP53   3280000 perm   8092 sec   (405 perm/sec)   p_kst 3.048780e-07   p_cons 3.048780e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.121239e-06	k: 0	n:3290000
Cons ci ratio: 2.771857e+00	ci left: 7.695382e-09	ci right 1.693507e-06	k: 1	n:3290000
KS ci ratio: 2.771857e+00	ci left: 7.695382e-09	ci right 1.693507e-06	k: 1	n:3290000
TP53   3290000 perm   8131 sec   (405 perm/sec)   p_kst 3.039514e-07   p_cons 3.039514e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.117842e-06	k: 0	n:3300000
Cons ci ratio: 2.771857e+00	ci left: 7.672063e-09	ci right 1.688376e-06	k: 1	n:3300000
KS ci ratio: 2.771857e+00	ci left: 7.672063e-09	ci right 1.688376e-06	k: 1	n:3300000
TP53   3300000 perm   8170 sec   (404 perm/sec)   p_kst 3.030303e-07   p_cons 3.030303e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.114464e-06	k: 0	n:3310000
Cons ci ratio: 2.771857e+00	ci left: 7.648885e-09	ci right 1.683275e-06	k: 1	n:3310000
KS ci ratio: 2.771857e+00	ci left: 7.648885e-09	ci right 1.683275e-06	k: 1	n:3310000
TP53   3310000 perm   8209 sec   (403 perm/sec)   p_kst 3.021148e-07   p_cons 3.021148e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.111108e-06	k: 0	n:3320000
Cons ci ratio: 2.771857e+00	ci left: 7.625846e-09	ci right 1.678205e-06	k: 1	n:3320000
KS ci ratio: 2.771857e+00	ci left: 7.625846e-09	ci right 1.678205e-06	k: 1	n:3320000
TP53   3320000 perm   8249 sec   (402 perm/sec)   p_kst 3.012048e-07   p_cons 3.012048e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.107771e-06	k: 0	n:3330000
Cons ci ratio: 2.771857e+00	ci left: 7.602945e-09	ci right 1.673165e-06	k: 1	n:3330000
KS ci ratio: 2.771857e+00	ci left: 7.602945e-09	ci right 1.673165e-06	k: 1	n:3330000
TP53   3330000 perm   8289 sec   (402 perm/sec)   p_kst 3.003003e-07   p_cons 3.003003e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.104454e-06	k: 0	n:3340000
Cons ci ratio: 2.771857e+00	ci left: 7.580182e-09	ci right 1.668156e-06	k: 1	n:3340000
KS ci ratio: 2.771857e+00	ci left: 7.580182e-09	ci right 1.668156e-06	k: 1	n:3340000
TP53   3340000 perm   8329 sec   (401 perm/sec)   p_kst 2.994012e-07   p_cons 2.994012e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.101157e-06	k: 0	n:3350000
Cons ci ratio: 2.771857e+00	ci left: 7.557555e-09	ci right 1.663176e-06	k: 1	n:3350000
KS ci ratio: 2.771857e+00	ci left: 7.557555e-09	ci right 1.663176e-06	k: 1	n:3350000
TP53   3350000 perm   8368 sec   (400 perm/sec)   p_kst 2.985075e-07   p_cons 2.985075e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.097880e-06	k: 0	n:3360000
Cons ci ratio: 2.771857e+00	ci left: 7.535062e-09	ci right 1.658226e-06	k: 1	n:3360000
KS ci ratio: 2.771857e+00	ci left: 7.535062e-09	ci right 1.658226e-06	k: 1	n:3360000
TP53   3360000 perm   8408 sec   (400 perm/sec)   p_kst 2.976190e-07   p_cons 2.976190e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.094622e-06	k: 0	n:3370000
Cons ci ratio: 2.771857e+00	ci left: 7.512703e-09	ci right 1.653306e-06	k: 1	n:3370000
KS ci ratio: 2.771857e+00	ci left: 7.512703e-09	ci right 1.653306e-06	k: 1	n:3370000
TP53   3370000 perm   8447 sec   (399 perm/sec)   p_kst 2.967359e-07   p_cons 2.967359e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.091384e-06	k: 0	n:3380000
Cons ci ratio: 2.771857e+00	ci left: 7.490476e-09	ci right 1.648414e-06	k: 1	n:3380000
KS ci ratio: 2.771857e+00	ci left: 7.490476e-09	ci right 1.648414e-06	k: 1	n:3380000
TP53   3380000 perm   8487 sec   (398 perm/sec)   p_kst 2.958580e-07   p_cons 2.958580e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.088164e-06	k: 0	n:3390000
Cons ci ratio: 2.771857e+00	ci left: 7.468380e-09	ci right 1.643552e-06	k: 1	n:3390000
KS ci ratio: 2.771857e+00	ci left: 7.468380e-09	ci right 1.643552e-06	k: 1	n:3390000
TP53   3390000 perm   8527 sec   (398 perm/sec)   p_kst 2.949853e-07   p_cons 2.949853e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.084964e-06	k: 0	n:3400000
Cons ci ratio: 2.771857e+00	ci left: 7.446414e-09	ci right 1.638718e-06	k: 1	n:3400000
KS ci ratio: 2.771857e+00	ci left: 7.446414e-09	ci right 1.638718e-06	k: 1	n:3400000
TP53   3400000 perm   8568 sec   (397 perm/sec)   p_kst 2.941176e-07   p_cons 2.941176e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.081782e-06	k: 0	n:3410000
Cons ci ratio: 2.771857e+00	ci left: 7.424577e-09	ci right 1.633912e-06	k: 1	n:3410000
KS ci ratio: 2.771857e+00	ci left: 7.424577e-09	ci right 1.633912e-06	k: 1	n:3410000
TP53   3410000 perm   8608 sec   (396 perm/sec)   p_kst 2.932551e-07   p_cons 2.932551e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.078619e-06	k: 0	n:3420000
Cons ci ratio: 2.771857e+00	ci left: 7.402868e-09	ci right 1.629134e-06	k: 1	n:3420000
KS ci ratio: 2.771857e+00	ci left: 7.402868e-09	ci right 1.629134e-06	k: 1	n:3420000
TP53   3420000 perm   8648 sec   (395 perm/sec)   p_kst 2.923977e-07   p_cons 2.923977e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.075474e-06	k: 0	n:3430000
Cons ci ratio: 2.771857e+00	ci left: 7.381285e-09	ci right 1.624385e-06	k: 1	n:3430000
KS ci ratio: 2.771857e+00	ci left: 7.381285e-09	ci right 1.624385e-06	k: 1	n:3430000
TP53   3430000 perm   8688 sec   (395 perm/sec)   p_kst 2.915452e-07   p_cons 2.915452e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.072348e-06	k: 0	n:3440000
Cons ci ratio: 2.771857e+00	ci left: 7.359828e-09	ci right 1.619663e-06	k: 1	n:3440000
KS ci ratio: 2.771857e+00	ci left: 7.359828e-09	ci right 1.619663e-06	k: 1	n:3440000
TP53   3440000 perm   8729 sec   (394 perm/sec)   p_kst 2.906977e-07   p_cons 2.906977e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.069240e-06	k: 0	n:3450000
Cons ci ratio: 2.771857e+00	ci left: 7.338495e-09	ci right 1.614968e-06	k: 1	n:3450000
KS ci ratio: 2.771857e+00	ci left: 7.338495e-09	ci right 1.614968e-06	k: 1	n:3450000
TP53   3450000 perm   8770 sec   (393 perm/sec)   p_kst 2.898551e-07   p_cons 2.898551e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.066150e-06	k: 0	n:3460000
Cons ci ratio: 2.771857e+00	ci left: 7.317286e-09	ci right 1.610300e-06	k: 1	n:3460000
KS ci ratio: 2.771857e+00	ci left: 7.317286e-09	ci right 1.610300e-06	k: 1	n:3460000
TP53   3460000 perm   8811 sec   (393 perm/sec)   p_kst 2.890173e-07   p_cons 2.890173e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.063077e-06	k: 0	n:3470000
Cons ci ratio: 2.771857e+00	ci left: 7.296198e-09	ci right 1.605660e-06	k: 1	n:3470000
KS ci ratio: 2.771857e+00	ci left: 7.296198e-09	ci right 1.605660e-06	k: 1	n:3470000
TP53   3470000 perm   8851 sec   (392 perm/sec)   p_kst 2.881844e-07   p_cons 2.881844e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.060022e-06	k: 0	n:3480000
Cons ci ratio: 2.771857e+00	ci left: 7.275232e-09	ci right 1.601046e-06	k: 1	n:3480000
KS ci ratio: 2.771857e+00	ci left: 7.275232e-09	ci right 1.601046e-06	k: 1	n:3480000
TP53   3480000 perm   8892 sec   (391 perm/sec)   p_kst 2.873563e-07   p_cons 2.873563e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.056985e-06	k: 0	n:3490000
Cons ci ratio: 2.771857e+00	ci left: 7.254386e-09	ci right 1.596458e-06	k: 1	n:3490000
KS ci ratio: 2.771857e+00	ci left: 7.254386e-09	ci right 1.596458e-06	k: 1	n:3490000
TP53   3490000 perm   8934 sec   (391 perm/sec)   p_kst 2.865330e-07   p_cons 2.865330e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.053965e-06	k: 0	n:3500000
Cons ci ratio: 2.771857e+00	ci left: 7.233659e-09	ci right 1.591897e-06	k: 1	n:3500000
KS ci ratio: 2.771857e+00	ci left: 7.233659e-09	ci right 1.591897e-06	k: 1	n:3500000
TP53   3500000 perm   8975 sec   (390 perm/sec)   p_kst 2.857143e-07   p_cons 2.857143e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.050962e-06	k: 0	n:3510000
Cons ci ratio: 2.771857e+00	ci left: 7.213051e-09	ci right 1.587362e-06	k: 1	n:3510000
KS ci ratio: 2.771857e+00	ci left: 7.213051e-09	ci right 1.587362e-06	k: 1	n:3510000
TP53   3510000 perm   9016 sec   (389 perm/sec)   p_kst 2.849003e-07   p_cons 2.849003e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.047977e-06	k: 0	n:3520000
Cons ci ratio: 2.771857e+00	ci left: 7.192559e-09	ci right 1.582852e-06	k: 1	n:3520000
KS ci ratio: 2.771857e+00	ci left: 7.192559e-09	ci right 1.582852e-06	k: 1	n:3520000
TP53   3520000 perm   9058 sec   (389 perm/sec)   p_kst 2.840909e-07   p_cons 2.840909e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.045008e-06	k: 0	n:3530000
Cons ci ratio: 2.771857e+00	ci left: 7.172184e-09	ci right 1.578368e-06	k: 1	n:3530000
KS ci ratio: 2.771857e+00	ci left: 7.172184e-09	ci right 1.578368e-06	k: 1	n:3530000
TP53   3530000 perm   9099 sec   (388 perm/sec)   p_kst 2.832861e-07   p_cons 2.832861e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.042056e-06	k: 0	n:3540000
Cons ci ratio: 2.771857e+00	ci left: 7.151923e-09	ci right 1.573910e-06	k: 1	n:3540000
KS ci ratio: 2.771857e+00	ci left: 7.151923e-09	ci right 1.573910e-06	k: 1	n:3540000
TP53   3540000 perm   9140 sec   (387 perm/sec)   p_kst 2.824859e-07   p_cons 2.824859e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.039120e-06	k: 0	n:3550000
Cons ci ratio: 2.771857e+00	ci left: 7.131777e-09	ci right 1.569476e-06	k: 1	n:3550000
KS ci ratio: 2.771857e+00	ci left: 7.131777e-09	ci right 1.569476e-06	k: 1	n:3550000
TP53   3550000 perm   9183 sec   (387 perm/sec)   p_kst 2.816901e-07   p_cons 2.816901e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.036202e-06	k: 0	n:3560000
Cons ci ratio: 2.771857e+00	ci left: 7.111744e-09	ci right 1.565067e-06	k: 1	n:3560000
KS ci ratio: 2.771857e+00	ci left: 7.111744e-09	ci right 1.565067e-06	k: 1	n:3560000
TP53   3560000 perm   9225 sec   (386 perm/sec)   p_kst 2.808989e-07   p_cons 2.808989e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.033299e-06	k: 0	n:3570000
Cons ci ratio: 2.771857e+00	ci left: 7.091823e-09	ci right 1.560683e-06	k: 1	n:3570000
KS ci ratio: 2.771857e+00	ci left: 7.091823e-09	ci right 1.560683e-06	k: 1	n:3570000
TP53   3570000 perm   9267 sec   (385 perm/sec)   p_kst 2.801120e-07   p_cons 2.801120e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.030413e-06	k: 0	n:3580000
Cons ci ratio: 2.771857e+00	ci left: 7.072013e-09	ci right 1.556324e-06	k: 1	n:3580000
KS ci ratio: 2.771857e+00	ci left: 7.072013e-09	ci right 1.556324e-06	k: 1	n:3580000
TP53   3580000 perm   9309 sec   (385 perm/sec)   p_kst 2.793296e-07   p_cons 2.793296e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.027542e-06	k: 0	n:3590000
Cons ci ratio: 2.771857e+00	ci left: 7.052314e-09	ci right 1.551989e-06	k: 1	n:3590000
KS ci ratio: 2.771857e+00	ci left: 7.052314e-09	ci right 1.551989e-06	k: 1	n:3590000
TP53   3590000 perm   9350 sec   (384 perm/sec)   p_kst 2.785515e-07   p_cons 2.785515e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.024688e-06	k: 0	n:3600000
Cons ci ratio: 2.771857e+00	ci left: 7.032724e-09	ci right 1.547678e-06	k: 1	n:3600000
KS ci ratio: 2.771857e+00	ci left: 7.032724e-09	ci right 1.547678e-06	k: 1	n:3600000
TP53   3600000 perm   9392 sec   (383 perm/sec)   p_kst 2.777778e-07   p_cons 2.777778e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.021850e-06	k: 0	n:3610000
Cons ci ratio: 2.771857e+00	ci left: 7.013243e-09	ci right 1.543391e-06	k: 1	n:3610000
KS ci ratio: 2.771857e+00	ci left: 7.013243e-09	ci right 1.543391e-06	k: 1	n:3610000
TP53   3610000 perm   9433 sec   (383 perm/sec)   p_kst 2.770083e-07   p_cons 2.770083e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.019027e-06	k: 0	n:3620000
Cons ci ratio: 2.771857e+00	ci left: 6.993870e-09	ci right 1.539127e-06	k: 1	n:3620000
KS ci ratio: 2.771857e+00	ci left: 6.993870e-09	ci right 1.539127e-06	k: 1	n:3620000
TP53   3620000 perm   9475 sec   (382 perm/sec)   p_kst 2.762431e-07   p_cons 2.762431e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.016220e-06	k: 0	n:3630000
Cons ci ratio: 2.771857e+00	ci left: 6.974603e-09	ci right 1.534887e-06	k: 1	n:3630000
KS ci ratio: 2.771857e+00	ci left: 6.974603e-09	ci right 1.534887e-06	k: 1	n:3630000
TP53   3630000 perm   9517 sec   (381 perm/sec)   p_kst 2.754821e-07   p_cons 2.754821e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.013428e-06	k: 0	n:3640000
Cons ci ratio: 2.771857e+00	ci left: 6.955442e-09	ci right 1.530670e-06	k: 1	n:3640000
KS ci ratio: 2.771857e+00	ci left: 6.955442e-09	ci right 1.530670e-06	k: 1	n:3640000
TP53   3640000 perm   9560 sec   (381 perm/sec)   p_kst 2.747253e-07   p_cons 2.747253e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.010651e-06	k: 0	n:3650000
Cons ci ratio: 2.771857e+00	ci left: 6.936386e-09	ci right 1.526477e-06	k: 1	n:3650000
KS ci ratio: 2.771857e+00	ci left: 6.936386e-09	ci right 1.526477e-06	k: 1	n:3650000
TP53   3650000 perm   9602 sec   (380 perm/sec)   p_kst 2.739726e-07   p_cons 2.739726e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.007890e-06	k: 0	n:3660000
Cons ci ratio: 2.771857e+00	ci left: 6.917434e-09	ci right 1.522306e-06	k: 1	n:3660000
KS ci ratio: 2.771857e+00	ci left: 6.917434e-09	ci right 1.522306e-06	k: 1	n:3660000
TP53   3660000 perm   9645 sec   (379 perm/sec)   p_kst 2.732240e-07   p_cons 2.732240e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.005144e-06	k: 0	n:3670000
Cons ci ratio: 2.771857e+00	ci left: 6.898585e-09	ci right 1.518158e-06	k: 1	n:3670000
KS ci ratio: 2.771857e+00	ci left: 6.898585e-09	ci right 1.518158e-06	k: 1	n:3670000
TP53   3670000 perm   9688 sec   (379 perm/sec)   p_kst 2.724796e-07   p_cons 2.724796e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.002412e-06	k: 0	n:3680000
Cons ci ratio: 2.771857e+00	ci left: 6.879839e-09	ci right 1.514033e-06	k: 1	n:3680000
KS ci ratio: 2.771857e+00	ci left: 6.879839e-09	ci right 1.514033e-06	k: 1	n:3680000
TP53   3680000 perm   9731 sec   (378 perm/sec)   p_kst 2.717391e-07   p_cons 2.717391e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.996958e-07	k: 0	n:3690000
Cons ci ratio: 2.771857e+00	ci left: 6.861195e-09	ci right 1.509930e-06	k: 1	n:3690000
KS ci ratio: 2.771857e+00	ci left: 6.861195e-09	ci right 1.509930e-06	k: 1	n:3690000
TP53   3690000 perm   9774 sec   (378 perm/sec)   p_kst 2.710027e-07   p_cons 2.710027e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.969940e-07	k: 0	n:3700000
Cons ci ratio: 2.771857e+00	ci left: 6.842651e-09	ci right 1.505849e-06	k: 1	n:3700000
KS ci ratio: 2.771857e+00	ci left: 6.842651e-09	ci right 1.505849e-06	k: 1	n:3700000
TP53   3700000 perm   9817 sec   (377 perm/sec)   p_kst 2.702703e-07   p_cons 2.702703e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.943066e-07	k: 0	n:3710000
Cons ci ratio: 2.771857e+00	ci left: 6.824207e-09	ci right 1.501790e-06	k: 1	n:3710000
KS ci ratio: 2.771857e+00	ci left: 6.824207e-09	ci right 1.501790e-06	k: 1	n:3710000
TP53   3710000 perm   9859 sec   (376 perm/sec)   p_kst 2.695418e-07   p_cons 2.695418e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.916338e-07	k: 0	n:3720000
Cons ci ratio: 2.771857e+00	ci left: 6.805862e-09	ci right 1.497753e-06	k: 1	n:3720000
KS ci ratio: 2.771857e+00	ci left: 6.805862e-09	ci right 1.497753e-06	k: 1	n:3720000
TP53   3720000 perm   9902 sec   (376 perm/sec)   p_kst 2.688172e-07   p_cons 2.688172e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.889752e-07	k: 0	n:3730000
Cons ci ratio: 2.771857e+00	ci left: 6.787616e-09	ci right 1.493737e-06	k: 1	n:3730000
KS ci ratio: 2.771857e+00	ci left: 6.787616e-09	ci right 1.493737e-06	k: 1	n:3730000
TP53   3730000 perm   9945 sec   (375 perm/sec)   p_kst 2.680965e-07   p_cons 2.680965e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.863309e-07	k: 0	n:3740000
Cons ci ratio: 2.771857e+00	ci left: 6.769467e-09	ci right 1.489743e-06	k: 1	n:3740000
KS ci ratio: 2.771857e+00	ci left: 6.769467e-09	ci right 1.489743e-06	k: 1	n:3740000
TP53   3740000 perm   9989 sec   (374 perm/sec)   p_kst 2.673797e-07   p_cons 2.673797e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.837007e-07	k: 0	n:3750000
Cons ci ratio: 2.771857e+00	ci left: 6.751415e-09	ci right 1.485771e-06	k: 1	n:3750000
KS ci ratio: 2.771857e+00	ci left: 6.751415e-09	ci right 1.485771e-06	k: 1	n:3750000
TP53   3750000 perm   10032 sec   (374 perm/sec)   p_kst 2.666667e-07   p_cons 2.666667e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.810845e-07	k: 0	n:3760000
Cons ci ratio: 2.771857e+00	ci left: 6.733460e-09	ci right 1.481819e-06	k: 1	n:3760000
KS ci ratio: 2.771857e+00	ci left: 6.733460e-09	ci right 1.481819e-06	k: 1	n:3760000
TP53   3760000 perm   10076 sec   (373 perm/sec)   p_kst 2.659574e-07   p_cons 2.659574e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.784821e-07	k: 0	n:3770000
Cons ci ratio: 2.771857e+00	ci left: 6.715599e-09	ci right 1.477889e-06	k: 1	n:3770000
KS ci ratio: 2.771857e+00	ci left: 6.715599e-09	ci right 1.477889e-06	k: 1	n:3770000
TP53   3770000 perm   10119 sec   (373 perm/sec)   p_kst 2.652520e-07   p_cons 2.652520e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.758936e-07	k: 0	n:3780000
Cons ci ratio: 2.771857e+00	ci left: 6.697833e-09	ci right 1.473979e-06	k: 1	n:3780000
KS ci ratio: 2.771857e+00	ci left: 6.697833e-09	ci right 1.473979e-06	k: 1	n:3780000
TP53   3780000 perm   10163 sec   (372 perm/sec)   p_kst 2.645503e-07   p_cons 2.645503e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.733186e-07	k: 0	n:3790000
Cons ci ratio: 2.771857e+00	ci left: 6.680160e-09	ci right 1.470090e-06	k: 1	n:3790000
KS ci ratio: 2.771857e+00	ci left: 6.680160e-09	ci right 1.470090e-06	k: 1	n:3790000
TP53   3790000 perm   10207 sec   (371 perm/sec)   p_kst 2.638522e-07   p_cons 2.638522e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.707573e-07	k: 0	n:3800000
Cons ci ratio: 2.771857e+00	ci left: 6.662581e-09	ci right 1.466221e-06	k: 1	n:3800000
KS ci ratio: 2.771857e+00	ci left: 6.662581e-09	ci right 1.466221e-06	k: 1	n:3800000
TP53   3800000 perm   10251 sec   (371 perm/sec)   p_kst 2.631579e-07   p_cons 2.631579e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.682094e-07	k: 0	n:3810000
Cons ci ratio: 2.771857e+00	ci left: 6.645094e-09	ci right 1.462373e-06	k: 1	n:3810000
KS ci ratio: 2.771857e+00	ci left: 6.645094e-09	ci right 1.462373e-06	k: 1	n:3810000
TP53   3810000 perm   10295 sec   (370 perm/sec)   p_kst 2.624672e-07   p_cons 2.624672e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.656748e-07	k: 0	n:3820000
Cons ci ratio: 2.771857e+00	ci left: 6.627698e-09	ci right 1.458545e-06	k: 1	n:3820000
KS ci ratio: 2.771857e+00	ci left: 6.627698e-09	ci right 1.458545e-06	k: 1	n:3820000
TP53   3820000 perm   10340 sec   (369 perm/sec)   p_kst 2.617801e-07   p_cons 2.617801e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.631534e-07	k: 0	n:3830000
Cons ci ratio: 2.771857e+00	ci left: 6.610394e-09	ci right 1.454736e-06	k: 1	n:3830000
KS ci ratio: 2.771857e+00	ci left: 6.610394e-09	ci right 1.454736e-06	k: 1	n:3830000
TP53   3830000 perm   10384 sec   (369 perm/sec)   p_kst 2.610966e-07   p_cons 2.610966e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.606452e-07	k: 0	n:3840000
Cons ci ratio: 2.771857e+00	ci left: 6.593179e-09	ci right 1.450948e-06	k: 1	n:3840000
KS ci ratio: 2.771857e+00	ci left: 6.593179e-09	ci right 1.450948e-06	k: 1	n:3840000
TP53   3840000 perm   10428 sec   (368 perm/sec)   p_kst 2.604167e-07   p_cons 2.604167e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.581500e-07	k: 0	n:3850000
Cons ci ratio: 2.771858e+00	ci left: 6.576054e-09	ci right 1.447179e-06	k: 1	n:3850000
KS ci ratio: 2.771858e+00	ci left: 6.576054e-09	ci right 1.447179e-06	k: 1	n:3850000
TP53   3850000 perm   10473 sec   (368 perm/sec)   p_kst 2.597403e-07   p_cons 2.597403e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.556678e-07	k: 0	n:3860000
Cons ci ratio: 2.771858e+00	ci left: 6.559018e-09	ci right 1.443430e-06	k: 1	n:3860000
KS ci ratio: 2.771858e+00	ci left: 6.559018e-09	ci right 1.443430e-06	k: 1	n:3860000
TP53   3860000 perm   10517 sec   (367 perm/sec)   p_kst 2.590674e-07   p_cons 2.590674e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.531984e-07	k: 0	n:3870000
Cons ci ratio: 2.771858e+00	ci left: 6.542069e-09	ci right 1.439700e-06	k: 1	n:3870000
KS ci ratio: 2.771858e+00	ci left: 6.542069e-09	ci right 1.439700e-06	k: 1	n:3870000
TP53   3870000 perm   10562 sec   (366 perm/sec)   p_kst 2.583979e-07   p_cons 2.583979e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.507417e-07	k: 0	n:3880000
Cons ci ratio: 2.771858e+00	ci left: 6.525208e-09	ci right 1.435990e-06	k: 1	n:3880000
KS ci ratio: 2.771858e+00	ci left: 6.525208e-09	ci right 1.435990e-06	k: 1	n:3880000
TP53   3880000 perm   10606 sec   (366 perm/sec)   p_kst 2.577320e-07   p_cons 2.577320e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.482976e-07	k: 0	n:3890000
Cons ci ratio: 2.771858e+00	ci left: 6.508434e-09	ci right 1.432298e-06	k: 1	n:3890000
KS ci ratio: 2.771858e+00	ci left: 6.508434e-09	ci right 1.432298e-06	k: 1	n:3890000
TP53   3890000 perm   10651 sec   (365 perm/sec)   p_kst 2.570694e-07   p_cons 2.570694e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.458661e-07	k: 0	n:3900000
Cons ci ratio: 2.771858e+00	ci left: 6.491746e-09	ci right 1.428626e-06	k: 1	n:3900000
KS ci ratio: 2.771858e+00	ci left: 6.491746e-09	ci right 1.428626e-06	k: 1	n:3900000
TP53   3900000 perm   10695 sec   (365 perm/sec)   p_kst 2.564103e-07   p_cons 2.564103e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.434470e-07	k: 0	n:3910000
Cons ci ratio: 2.771858e+00	ci left: 6.475143e-09	ci right 1.424972e-06	k: 1	n:3910000
KS ci ratio: 2.771858e+00	ci left: 6.475143e-09	ci right 1.424972e-06	k: 1	n:3910000
TP53   3910000 perm   10740 sec   (364 perm/sec)   p_kst 2.557545e-07   p_cons 2.557545e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.410402e-07	k: 0	n:3920000
Cons ci ratio: 2.771858e+00	ci left: 6.458624e-09	ci right 1.421337e-06	k: 1	n:3920000
KS ci ratio: 2.771858e+00	ci left: 6.458624e-09	ci right 1.421337e-06	k: 1	n:3920000
TP53   3920000 perm   10784 sec   (363 perm/sec)   p_kst 2.551020e-07   p_cons 2.551020e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.386457e-07	k: 0	n:3930000
Cons ci ratio: 2.771858e+00	ci left: 6.442190e-09	ci right 1.417720e-06	k: 1	n:3930000
KS ci ratio: 2.771858e+00	ci left: 6.442190e-09	ci right 1.417720e-06	k: 1	n:3930000
TP53   3930000 perm   10830 sec   (363 perm/sec)   p_kst 2.544529e-07   p_cons 2.544529e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.362634e-07	k: 0	n:3940000
Cons ci ratio: 2.771858e+00	ci left: 6.425839e-09	ci right 1.414122e-06	k: 1	n:3940000
KS ci ratio: 2.771858e+00	ci left: 6.425839e-09	ci right 1.414122e-06	k: 1	n:3940000
TP53   3940000 perm   10875 sec   (362 perm/sec)   p_kst 2.538071e-07   p_cons 2.538071e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.338931e-07	k: 0	n:3950000
Cons ci ratio: 2.771858e+00	ci left: 6.409572e-09	ci right 1.410542e-06	k: 1	n:3950000
KS ci ratio: 2.771858e+00	ci left: 6.409572e-09	ci right 1.410542e-06	k: 1	n:3950000
TP53   3950000 perm   10920 sec   (362 perm/sec)   p_kst 2.531646e-07   p_cons 2.531646e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.315348e-07	k: 0	n:3960000
Cons ci ratio: 2.771858e+00	ci left: 6.393386e-09	ci right 1.406980e-06	k: 1	n:3960000
KS ci ratio: 2.771858e+00	ci left: 6.393386e-09	ci right 1.406980e-06	k: 1	n:3960000
TP53   3960000 perm   10965 sec   (361 perm/sec)   p_kst 2.525253e-07   p_cons 2.525253e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.291883e-07	k: 0	n:3970000
Cons ci ratio: 2.771858e+00	ci left: 6.377281e-09	ci right 1.403436e-06	k: 1	n:3970000
KS ci ratio: 2.771858e+00	ci left: 6.377281e-09	ci right 1.403436e-06	k: 1	n:3970000
TP53   3970000 perm   11010 sec   (361 perm/sec)   p_kst 2.518892e-07   p_cons 2.518892e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.268537e-07	k: 0	n:3980000
Cons ci ratio: 2.771858e+00	ci left: 6.361258e-09	ci right 1.399910e-06	k: 1	n:3980000
KS ci ratio: 2.771858e+00	ci left: 6.361258e-09	ci right 1.399910e-06	k: 1	n:3980000
TP53   3980000 perm   11057 sec   (360 perm/sec)   p_kst 2.512563e-07   p_cons 2.512563e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.245308e-07	k: 0	n:3990000
Cons ci ratio: 2.771858e+00	ci left: 6.345315e-09	ci right 1.396401e-06	k: 1	n:3990000
KS ci ratio: 2.771858e+00	ci left: 6.345315e-09	ci right 1.396401e-06	k: 1	n:3990000
TP53   3990000 perm   11102 sec   (359 perm/sec)   p_kst 2.506266e-07   p_cons 2.506266e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.222194e-07	k: 0	n:4000000
Cons ci ratio: 2.771858e+00	ci left: 6.329452e-09	ci right 1.392910e-06	k: 1	n:4000000
KS ci ratio: 2.771858e+00	ci left: 6.329452e-09	ci right 1.392910e-06	k: 1	n:4000000
TP53   4000000 perm   11148 sec   (359 perm/sec)   p_kst 2.500000e-07   p_cons 2.500000e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.199196e-07	k: 0	n:4010000
Cons ci ratio: 2.771858e+00	ci left: 6.313668e-09	ci right 1.389436e-06	k: 1	n:4010000
KS ci ratio: 2.771858e+00	ci left: 6.313668e-09	ci right 1.389436e-06	k: 1	n:4010000
TP53   4010000 perm   11194 sec   (358 perm/sec)   p_kst 2.493766e-07   p_cons 2.493766e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.176313e-07	k: 0	n:4020000
Cons ci ratio: 2.771858e+00	ci left: 6.297962e-09	ci right 1.385980e-06	k: 1	n:4020000
KS ci ratio: 2.771858e+00	ci left: 6.297962e-09	ci right 1.385980e-06	k: 1	n:4020000
TP53   4020000 perm   11240 sec   (358 perm/sec)   p_kst 2.487562e-07   p_cons 2.487562e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.153543e-07	k: 0	n:4030000
Cons ci ratio: 2.771858e+00	ci left: 6.282334e-09	ci right 1.382541e-06	k: 1	n:4030000
KS ci ratio: 2.771858e+00	ci left: 6.282334e-09	ci right 1.382541e-06	k: 1	n:4030000
TP53   4030000 perm   11286 sec   (357 perm/sec)   p_kst 2.481390e-07   p_cons 2.481390e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.130886e-07	k: 0	n:4040000
Cons ci ratio: 2.771858e+00	ci left: 6.266784e-09	ci right 1.379119e-06	k: 1	n:4040000
KS ci ratio: 2.771858e+00	ci left: 6.266784e-09	ci right 1.379119e-06	k: 1	n:4040000
TP53   4040000 perm   11332 sec   (357 perm/sec)   p_kst 2.475248e-07   p_cons 2.475248e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.108340e-07	k: 0	n:4050000
Cons ci ratio: 2.771858e+00	ci left: 6.251311e-09	ci right 1.375714e-06	k: 1	n:4050000
KS ci ratio: 2.771858e+00	ci left: 6.251311e-09	ci right 1.375714e-06	k: 1	n:4050000
TP53   4050000 perm   11378 sec   (356 perm/sec)   p_kst 2.469136e-07   p_cons 2.469136e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.085906e-07	k: 0	n:4060000
Cons ci ratio: 2.771858e+00	ci left: 6.235913e-09	ci right 1.372325e-06	k: 1	n:4060000
KS ci ratio: 2.771858e+00	ci left: 6.235913e-09	ci right 1.372325e-06	k: 1	n:4060000
TP53   4060000 perm   11424 sec   (355 perm/sec)   p_kst 2.463054e-07   p_cons 2.463054e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.063582e-07	k: 0	n:4070000
Cons ci ratio: 2.771858e+00	ci left: 6.220592e-09	ci right 1.368953e-06	k: 1	n:4070000
KS ci ratio: 2.771858e+00	ci left: 6.220592e-09	ci right 1.368953e-06	k: 1	n:4070000
TP53   4070000 perm   11469 sec   (355 perm/sec)   p_kst 2.457002e-07   p_cons 2.457002e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.041367e-07	k: 0	n:4080000
Cons ci ratio: 2.771858e+00	ci left: 6.205345e-09	ci right 1.365598e-06	k: 1	n:4080000
KS ci ratio: 2.771858e+00	ci left: 6.205345e-09	ci right 1.365598e-06	k: 1	n:4080000
TP53   4080000 perm   11516 sec   (354 perm/sec)   p_kst 2.450980e-07   p_cons 2.450980e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.019261e-07	k: 0	n:4090000
Cons ci ratio: 2.771858e+00	ci left: 6.190173e-09	ci right 1.362259e-06	k: 1	n:4090000
KS ci ratio: 2.771858e+00	ci left: 6.190173e-09	ci right 1.362259e-06	k: 1	n:4090000
TP53   4090000 perm   11562 sec   (354 perm/sec)   p_kst 2.444988e-07   p_cons 2.444988e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.997263e-07	k: 0	n:4100000
Cons ci ratio: 2.771858e+00	ci left: 6.175075e-09	ci right 1.358937e-06	k: 1	n:4100000
KS ci ratio: 2.771858e+00	ci left: 6.175075e-09	ci right 1.358937e-06	k: 1	n:4100000
TP53   4100000 perm   11610 sec   (353 perm/sec)   p_kst 2.439024e-07   p_cons 2.439024e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.975372e-07	k: 0	n:4110000
Cons ci ratio: 2.771858e+00	ci left: 6.160051e-09	ci right 1.355630e-06	k: 1	n:4110000
KS ci ratio: 2.771858e+00	ci left: 6.160051e-09	ci right 1.355630e-06	k: 1	n:4110000
TP53   4110000 perm   11656 sec   (353 perm/sec)   p_kst 2.433090e-07   p_cons 2.433090e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.953587e-07	k: 0	n:4120000
Cons ci ratio: 2.771858e+00	ci left: 6.145099e-09	ci right 1.352340e-06	k: 1	n:4120000
KS ci ratio: 2.771858e+00	ci left: 6.145099e-09	ci right 1.352340e-06	k: 1	n:4120000
TP53   4120000 perm   11703 sec   (352 perm/sec)   p_kst 2.427184e-07   p_cons 2.427184e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.931908e-07	k: 0	n:4130000
Cons ci ratio: 2.771858e+00	ci left: 6.130220e-09	ci right 1.349065e-06	k: 1	n:4130000
KS ci ratio: 2.771858e+00	ci left: 6.130220e-09	ci right 1.349065e-06	k: 1	n:4130000
TP53   4130000 perm   11750 sec   (351 perm/sec)   p_kst 2.421308e-07   p_cons 2.421308e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.910333e-07	k: 0	n:4140000
Cons ci ratio: 2.771858e+00	ci left: 6.115413e-09	ci right 1.345807e-06	k: 1	n:4140000
KS ci ratio: 2.771858e+00	ci left: 6.115413e-09	ci right 1.345807e-06	k: 1	n:4140000
TP53   4140000 perm   11797 sec   (351 perm/sec)   p_kst 2.415459e-07   p_cons 2.415459e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.888862e-07	k: 0	n:4150000
Cons ci ratio: 2.771858e+00	ci left: 6.100677e-09	ci right 1.342564e-06	k: 1	n:4150000
KS ci ratio: 2.771858e+00	ci left: 6.100677e-09	ci right 1.342564e-06	k: 1	n:4150000
TP53   4150000 perm   11844 sec   (350 perm/sec)   p_kst 2.409639e-07   p_cons 2.409639e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.867495e-07	k: 0	n:4160000
Cons ci ratio: 2.771858e+00	ci left: 6.086011e-09	ci right 1.339337e-06	k: 1	n:4160000
KS ci ratio: 2.771858e+00	ci left: 6.086011e-09	ci right 1.339337e-06	k: 1	n:4160000
TP53   4160000 perm   11891 sec   (350 perm/sec)   p_kst 2.403846e-07   p_cons 2.403846e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.846230e-07	k: 0	n:4170000
Cons ci ratio: 2.771858e+00	ci left: 6.071417e-09	ci right 1.336125e-06	k: 1	n:4170000
KS ci ratio: 2.771858e+00	ci left: 6.071417e-09	ci right 1.336125e-06	k: 1	n:4170000
TP53   4170000 perm   11938 sec   (349 perm/sec)   p_kst 2.398082e-07   p_cons 2.398082e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.825067e-07	k: 0	n:4180000
Cons ci ratio: 2.771858e+00	ci left: 6.056892e-09	ci right 1.332928e-06	k: 1	n:4180000
KS ci ratio: 2.771858e+00	ci left: 6.056892e-09	ci right 1.332928e-06	k: 1	n:4180000
TP53   4180000 perm   11987 sec   (349 perm/sec)   p_kst 2.392344e-07   p_cons 2.392344e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.804004e-07	k: 0	n:4190000
Cons ci ratio: 2.771858e+00	ci left: 6.042436e-09	ci right 1.329747e-06	k: 1	n:4190000
KS ci ratio: 2.771858e+00	ci left: 6.042436e-09	ci right 1.329747e-06	k: 1	n:4190000
TP53   4190000 perm   12034 sec   (348 perm/sec)   p_kst 2.386635e-07   p_cons 2.386635e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.783042e-07	k: 0	n:4200000
Cons ci ratio: 2.771858e+00	ci left: 6.028049e-09	ci right 1.326581e-06	k: 1	n:4200000
KS ci ratio: 2.771858e+00	ci left: 6.028049e-09	ci right 1.326581e-06	k: 1	n:4200000
TP53   4200000 perm   12082 sec   (348 perm/sec)   p_kst 2.380952e-07   p_cons 2.380952e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.762180e-07	k: 0	n:4210000
Cons ci ratio: 2.771858e+00	ci left: 6.013731e-09	ci right 1.323430e-06	k: 1	n:4210000
KS ci ratio: 2.771858e+00	ci left: 6.013731e-09	ci right 1.323430e-06	k: 1	n:4210000
TP53   4210000 perm   12130 sec   (347 perm/sec)   p_kst 2.375297e-07   p_cons 2.375297e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.741417e-07	k: 0	n:4220000
Cons ci ratio: 2.771858e+00	ci left: 5.999481e-09	ci right 1.320294e-06	k: 1	n:4220000
KS ci ratio: 2.771858e+00	ci left: 5.999481e-09	ci right 1.320294e-06	k: 1	n:4220000
TP53   4220000 perm   12178 sec   (347 perm/sec)   p_kst 2.369668e-07   p_cons 2.369668e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.720751e-07	k: 0	n:4230000
Cons ci ratio: 2.771858e+00	ci left: 5.985298e-09	ci right 1.317173e-06	k: 1	n:4230000
KS ci ratio: 2.771858e+00	ci left: 5.985298e-09	ci right 1.317173e-06	k: 1	n:4230000
TP53   4230000 perm   12226 sec   (346 perm/sec)   p_kst 2.364066e-07   p_cons 2.364066e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.700184e-07	k: 0	n:4240000
Cons ci ratio: 2.771858e+00	ci left: 5.971181e-09	ci right 1.314066e-06	k: 1	n:4240000
KS ci ratio: 2.771858e+00	ci left: 5.971181e-09	ci right 1.314066e-06	k: 1	n:4240000
TP53   4240000 perm   12273 sec   (345 perm/sec)   p_kst 2.358491e-07   p_cons 2.358491e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.679713e-07	k: 0	n:4250000
Cons ci ratio: 2.771858e+00	ci left: 5.957131e-09	ci right 1.310974e-06	k: 1	n:4250000
KS ci ratio: 2.771858e+00	ci left: 5.957131e-09	ci right 1.310974e-06	k: 1	n:4250000
TP53   4250000 perm   12321 sec   (345 perm/sec)   p_kst 2.352941e-07   p_cons 2.352941e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.659338e-07	k: 0	n:4260000
Cons ci ratio: 2.771858e+00	ci left: 5.943147e-09	ci right 1.307897e-06	k: 1	n:4260000
KS ci ratio: 2.771858e+00	ci left: 5.943147e-09	ci right 1.307897e-06	k: 1	n:4260000
TP53   4260000 perm   12370 sec   (344 perm/sec)   p_kst 2.347418e-07   p_cons 2.347418e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.639058e-07	k: 0	n:4270000
Cons ci ratio: 2.771858e+00	ci left: 5.929229e-09	ci right 1.304834e-06	k: 1	n:4270000
KS ci ratio: 2.771858e+00	ci left: 5.929229e-09	ci right 1.304834e-06	k: 1	n:4270000
TP53   4270000 perm   12418 sec   (344 perm/sec)   p_kst 2.341920e-07   p_cons 2.341920e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.618874e-07	k: 0	n:4280000
Cons ci ratio: 2.771858e+00	ci left: 5.915376e-09	ci right 1.301785e-06	k: 1	n:4280000
KS ci ratio: 2.771858e+00	ci left: 5.915376e-09	ci right 1.301785e-06	k: 1	n:4280000
TP53   4280000 perm   12466 sec   (343 perm/sec)   p_kst 2.336449e-07   p_cons 2.336449e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.598783e-07	k: 0	n:4290000
Cons ci ratio: 2.771858e+00	ci left: 5.901587e-09	ci right 1.298751e-06	k: 1	n:4290000
KS ci ratio: 2.771858e+00	ci left: 5.901587e-09	ci right 1.298751e-06	k: 1	n:4290000
TP53   4290000 perm   12514 sec   (343 perm/sec)   p_kst 2.331002e-07   p_cons 2.331002e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.578786e-07	k: 0	n:4300000
Cons ci ratio: 2.771858e+00	ci left: 5.887862e-09	ci right 1.295730e-06	k: 1	n:4300000
KS ci ratio: 2.771858e+00	ci left: 5.887862e-09	ci right 1.295730e-06	k: 1	n:4300000
TP53   4300000 perm   12562 sec   (342 perm/sec)   p_kst 2.325581e-07   p_cons 2.325581e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.558881e-07	k: 0	n:4310000
Cons ci ratio: 2.771858e+00	ci left: 5.874201e-09	ci right 1.292724e-06	k: 1	n:4310000
KS ci ratio: 2.771858e+00	ci left: 5.874201e-09	ci right 1.292724e-06	k: 1	n:4310000
TP53   4310000 perm   12612 sec   (342 perm/sec)   p_kst 2.320186e-07   p_cons 2.320186e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.539069e-07	k: 0	n:4320000
Cons ci ratio: 2.771858e+00	ci left: 5.860604e-09	ci right 1.289732e-06	k: 1	n:4320000
KS ci ratio: 2.771858e+00	ci left: 5.860604e-09	ci right 1.289732e-06	k: 1	n:4320000
TP53   4320000 perm   12661 sec   (341 perm/sec)   p_kst 2.314815e-07   p_cons 2.314815e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.519348e-07	k: 0	n:4330000
Cons ci ratio: 2.771858e+00	ci left: 5.847069e-09	ci right 1.286753e-06	k: 1	n:4330000
KS ci ratio: 2.771858e+00	ci left: 5.847069e-09	ci right 1.286753e-06	k: 1	n:4330000
TP53   4330000 perm   12709 sec   (341 perm/sec)   p_kst 2.309469e-07   p_cons 2.309469e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.499719e-07	k: 0	n:4340000
Cons ci ratio: 2.771858e+00	ci left: 5.833596e-09	ci right 1.283788e-06	k: 1	n:4340000
KS ci ratio: 2.771858e+00	ci left: 5.833596e-09	ci right 1.283788e-06	k: 1	n:4340000
TP53   4340000 perm   12758 sec   (340 perm/sec)   p_kst 2.304147e-07   p_cons 2.304147e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.480179e-07	k: 0	n:4350000
Cons ci ratio: 2.771858e+00	ci left: 5.820186e-09	ci right 1.280837e-06	k: 1	n:4350000
KS ci ratio: 2.771858e+00	ci left: 5.820186e-09	ci right 1.280837e-06	k: 1	n:4350000
TP53   4350000 perm   12807 sec   (340 perm/sec)   p_kst 2.298851e-07   p_cons 2.298851e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.460729e-07	k: 0	n:4360000
Cons ci ratio: 2.771858e+00	ci left: 5.806837e-09	ci right 1.277899e-06	k: 1	n:4360000
KS ci ratio: 2.771858e+00	ci left: 5.806837e-09	ci right 1.277899e-06	k: 1	n:4360000
TP53   4360000 perm   12857 sec   (339 perm/sec)   p_kst 2.293578e-07   p_cons 2.293578e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.441368e-07	k: 0	n:4370000
Cons ci ratio: 2.771858e+00	ci left: 5.793549e-09	ci right 1.274975e-06	k: 1	n:4370000
KS ci ratio: 2.771858e+00	ci left: 5.793549e-09	ci right 1.274975e-06	k: 1	n:4370000
TP53   4370000 perm   12906 sec   (339 perm/sec)   p_kst 2.288330e-07   p_cons 2.288330e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.422096e-07	k: 0	n:4380000
Cons ci ratio: 2.771858e+00	ci left: 5.780321e-09	ci right 1.272064e-06	k: 1	n:4380000
KS ci ratio: 2.771858e+00	ci left: 5.780321e-09	ci right 1.272064e-06	k: 1	n:4380000
TP53   4380000 perm   12955 sec   (338 perm/sec)   p_kst 2.283105e-07   p_cons 2.283105e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.402911e-07	k: 0	n:4390000
Cons ci ratio: 2.771858e+00	ci left: 5.767154e-09	ci right 1.269166e-06	k: 1	n:4390000
KS ci ratio: 2.771858e+00	ci left: 5.767154e-09	ci right 1.269166e-06	k: 1	n:4390000
TP53   4390000 perm   13005 sec   (338 perm/sec)   p_kst 2.277904e-07   p_cons 2.277904e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.383813e-07	k: 0	n:4400000
Cons ci ratio: 2.771858e+00	ci left: 5.754047e-09	ci right 1.266282e-06	k: 1	n:4400000
KS ci ratio: 2.771858e+00	ci left: 5.754047e-09	ci right 1.266282e-06	k: 1	n:4400000
TP53   4400000 perm   13054 sec   (337 perm/sec)   p_kst 2.272727e-07   p_cons 2.272727e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.364803e-07	k: 0	n:4410000
Cons ci ratio: 2.771858e+00	ci left: 5.741000e-09	ci right 1.263411e-06	k: 1	n:4410000
KS ci ratio: 2.771858e+00	ci left: 5.741000e-09	ci right 1.263411e-06	k: 1	n:4410000
TP53   4410000 perm   13103 sec   (337 perm/sec)   p_kst 2.267574e-07   p_cons 2.267574e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.345878e-07	k: 0	n:4420000
Cons ci ratio: 2.771858e+00	ci left: 5.728011e-09	ci right 1.260552e-06	k: 1	n:4420000
KS ci ratio: 2.771858e+00	ci left: 5.728011e-09	ci right 1.260552e-06	k: 1	n:4420000
TP53   4420000 perm   13153 sec   (336 perm/sec)   p_kst 2.262443e-07   p_cons 2.262443e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.327038e-07	k: 0	n:4430000
Cons ci ratio: 2.771858e+00	ci left: 5.715081e-09	ci right 1.257707e-06	k: 1	n:4430000
KS ci ratio: 2.771858e+00	ci left: 5.715081e-09	ci right 1.257707e-06	k: 1	n:4430000
TP53   4430000 perm   13203 sec   (336 perm/sec)   p_kst 2.257336e-07   p_cons 2.257336e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.308284e-07	k: 0	n:4440000
Cons ci ratio: 2.771858e+00	ci left: 5.702209e-09	ci right 1.254874e-06	k: 1	n:4440000
KS ci ratio: 2.771858e+00	ci left: 5.702209e-09	ci right 1.254874e-06	k: 1	n:4440000
TP53   4440000 perm   13253 sec   (335 perm/sec)   p_kst 2.252252e-07   p_cons 2.252252e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.289613e-07	k: 0	n:4450000
Cons ci ratio: 2.771858e+00	ci left: 5.689395e-09	ci right 1.252054e-06	k: 1	n:4450000
KS ci ratio: 2.771858e+00	ci left: 5.689395e-09	ci right 1.252054e-06	k: 1	n:4450000
TP53   4450000 perm   13303 sec   (335 perm/sec)   p_kst 2.247191e-07   p_cons 2.247191e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.271027e-07	k: 0	n:4460000
Cons ci ratio: 2.771858e+00	ci left: 5.676638e-09	ci right 1.249247e-06	k: 1	n:4460000
KS ci ratio: 2.771858e+00	ci left: 5.676638e-09	ci right 1.249247e-06	k: 1	n:4460000
TP53   4460000 perm   13352 sec   (334 perm/sec)   p_kst 2.242152e-07   p_cons 2.242152e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.252523e-07	k: 0	n:4470000
Cons ci ratio: 2.771858e+00	ci left: 5.663939e-09	ci right 1.246452e-06	k: 1	n:4470000
KS ci ratio: 2.771858e+00	ci left: 5.663939e-09	ci right 1.246452e-06	k: 1	n:4470000
TP53   4470000 perm   13402 sec   (334 perm/sec)   p_kst 2.237136e-07   p_cons 2.237136e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.234103e-07	k: 0	n:4480000
Cons ci ratio: 2.771858e+00	ci left: 5.651297e-09	ci right 1.243670e-06	k: 1	n:4480000
KS ci ratio: 2.771858e+00	ci left: 5.651297e-09	ci right 1.243670e-06	k: 1	n:4480000
TP53   4480000 perm   13452 sec   (333 perm/sec)   p_kst 2.232143e-07   p_cons 2.232143e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.215764e-07	k: 0	n:4490000
Cons ci ratio: 2.771858e+00	ci left: 5.638710e-09	ci right 1.240900e-06	k: 1	n:4490000
KS ci ratio: 2.771858e+00	ci left: 5.638710e-09	ci right 1.240900e-06	k: 1	n:4490000
TP53   4490000 perm   13503 sec   (333 perm/sec)   p_kst 2.227171e-07   p_cons 2.227171e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.197507e-07	k: 0	n:4500000
Cons ci ratio: 2.771858e+00	ci left: 5.626179e-09	ci right 1.238142e-06	k: 1	n:4500000
KS ci ratio: 2.771858e+00	ci left: 5.626179e-09	ci right 1.238142e-06	k: 1	n:4500000
TP53   4500000 perm   13554 sec   (332 perm/sec)   p_kst 2.222222e-07   p_cons 2.222222e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.179330e-07	k: 0	n:4510000
Cons ci ratio: 2.771858e+00	ci left: 5.613705e-09	ci right 1.235397e-06	k: 1	n:4510000
KS ci ratio: 2.771858e+00	ci left: 5.613705e-09	ci right 1.235397e-06	k: 1	n:4510000
TP53   4510000 perm   13604 sec   (332 perm/sec)   p_kst 2.217295e-07   p_cons 2.217295e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.161234e-07	k: 0	n:4520000
Cons ci ratio: 2.771858e+00	ci left: 5.601285e-09	ci right 1.232664e-06	k: 1	n:4520000
KS ci ratio: 2.771858e+00	ci left: 5.601285e-09	ci right 1.232664e-06	k: 1	n:4520000
TP53   4520000 perm   13654 sec   (331 perm/sec)   p_kst 2.212389e-07   p_cons 2.212389e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.143218e-07	k: 0	n:4530000
Cons ci ratio: 2.771858e+00	ci left: 5.588920e-09	ci right 1.229943e-06	k: 1	n:4530000
KS ci ratio: 2.771858e+00	ci left: 5.588920e-09	ci right 1.229943e-06	k: 1	n:4530000
TP53   4530000 perm   13704 sec   (331 perm/sec)   p_kst 2.207506e-07   p_cons 2.207506e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.125282e-07	k: 0	n:4540000
Cons ci ratio: 2.771858e+00	ci left: 5.576610e-09	ci right 1.227234e-06	k: 1	n:4540000
KS ci ratio: 2.771858e+00	ci left: 5.576610e-09	ci right 1.227234e-06	k: 1	n:4540000
TP53   4540000 perm   13755 sec   (330 perm/sec)   p_kst 2.202643e-07   p_cons 2.202643e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.107424e-07	k: 0	n:4550000
Cons ci ratio: 2.771858e+00	ci left: 5.564354e-09	ci right 1.224536e-06	k: 1	n:4550000
KS ci ratio: 2.771858e+00	ci left: 5.564354e-09	ci right 1.224536e-06	k: 1	n:4550000
TP53   4550000 perm   13806 sec   (330 perm/sec)   p_kst 2.197802e-07   p_cons 2.197802e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.089645e-07	k: 0	n:4560000
Cons ci ratio: 2.771858e+00	ci left: 5.552151e-09	ci right 1.221851e-06	k: 1	n:4560000
KS ci ratio: 2.771858e+00	ci left: 5.552151e-09	ci right 1.221851e-06	k: 1	n:4560000
TP53   4560000 perm   13856 sec   (329 perm/sec)   p_kst 2.192982e-07   p_cons 2.192982e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.071943e-07	k: 0	n:4570000
Cons ci ratio: 2.771858e+00	ci left: 5.540002e-09	ci right 1.219177e-06	k: 1	n:4570000
KS ci ratio: 2.771858e+00	ci left: 5.540002e-09	ci right 1.219177e-06	k: 1	n:4570000
TP53   4570000 perm   13907 sec   (329 perm/sec)   p_kst 2.188184e-07   p_cons 2.188184e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.054319e-07	k: 0	n:4580000
Cons ci ratio: 2.771858e+00	ci left: 5.527906e-09	ci right 1.216515e-06	k: 1	n:4580000
KS ci ratio: 2.771858e+00	ci left: 5.527906e-09	ci right 1.216515e-06	k: 1	n:4580000
TP53   4580000 perm   13958 sec   (328 perm/sec)   p_kst 2.183406e-07   p_cons 2.183406e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.036771e-07	k: 0	n:4590000
Cons ci ratio: 2.771858e+00	ci left: 5.515862e-09	ci right 1.213865e-06	k: 1	n:4590000
KS ci ratio: 2.771858e+00	ci left: 5.515862e-09	ci right 1.213865e-06	k: 1	n:4590000
TP53   4590000 perm   14008 sec   (328 perm/sec)   p_kst 2.178649e-07   p_cons 2.178649e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.019300e-07	k: 0	n:4600000
Cons ci ratio: 2.771858e+00	ci left: 5.503871e-09	ci right 1.211226e-06	k: 1	n:4600000
KS ci ratio: 2.771858e+00	ci left: 5.503871e-09	ci right 1.211226e-06	k: 1	n:4600000
TP53   4600000 perm   14060 sec   (327 perm/sec)   p_kst 2.173913e-07   p_cons 2.173913e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.001904e-07	k: 0	n:4610000
Cons ci ratio: 2.771858e+00	ci left: 5.491932e-09	ci right 1.208599e-06	k: 1	n:4610000
KS ci ratio: 2.771858e+00	ci left: 5.491932e-09	ci right 1.208599e-06	k: 1	n:4610000
TP53   4610000 perm   14111 sec   (327 perm/sec)   p_kst 2.169197e-07   p_cons 2.169197e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.984584e-07	k: 0	n:4620000
Cons ci ratio: 2.771858e+00	ci left: 5.480045e-09	ci right 1.205983e-06	k: 1	n:4620000
KS ci ratio: 2.771858e+00	ci left: 5.480045e-09	ci right 1.205983e-06	k: 1	n:4620000
TP53   4620000 perm   14162 sec   (326 perm/sec)   p_kst 2.164502e-07   p_cons 2.164502e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.967339e-07	k: 0	n:4630000
Cons ci ratio: 2.771858e+00	ci left: 5.468209e-09	ci right 1.203378e-06	k: 1	n:4630000
KS ci ratio: 2.771858e+00	ci left: 5.468209e-09	ci right 1.203378e-06	k: 1	n:4630000
TP53   4630000 perm   14214 sec   (326 perm/sec)   p_kst 2.159827e-07   p_cons 2.159827e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.950168e-07	k: 0	n:4640000
Cons ci ratio: 2.771858e+00	ci left: 5.456424e-09	ci right 1.200785e-06	k: 1	n:4640000
KS ci ratio: 2.771858e+00	ci left: 5.456424e-09	ci right 1.200785e-06	k: 1	n:4640000
TP53   4640000 perm   14265 sec   (325 perm/sec)   p_kst 2.155172e-07   p_cons 2.155172e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.933071e-07	k: 0	n:4650000
Cons ci ratio: 2.771858e+00	ci left: 5.444690e-09	ci right 1.198202e-06	k: 1	n:4650000
KS ci ratio: 2.771858e+00	ci left: 5.444690e-09	ci right 1.198202e-06	k: 1	n:4650000
TP53   4650000 perm   14316 sec   (325 perm/sec)   p_kst 2.150538e-07   p_cons 2.150538e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.916047e-07	k: 0	n:4660000
Cons ci ratio: 2.771858e+00	ci left: 5.433006e-09	ci right 1.195631e-06	k: 1	n:4660000
KS ci ratio: 2.771858e+00	ci left: 5.433006e-09	ci right 1.195631e-06	k: 1	n:4660000
TP53   4660000 perm   14369 sec   (324 perm/sec)   p_kst 2.145923e-07   p_cons 2.145923e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.899096e-07	k: 0	n:4670000
Cons ci ratio: 2.771858e+00	ci left: 5.421372e-09	ci right 1.193071e-06	k: 1	n:4670000
KS ci ratio: 2.771858e+00	ci left: 5.421372e-09	ci right 1.193071e-06	k: 1	n:4670000
TP53   4670000 perm   14421 sec   (324 perm/sec)   p_kst 2.141328e-07   p_cons 2.141328e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.882218e-07	k: 0	n:4680000
Cons ci ratio: 2.771858e+00	ci left: 5.409788e-09	ci right 1.190522e-06	k: 1	n:4680000
KS ci ratio: 2.771858e+00	ci left: 5.409788e-09	ci right 1.190522e-06	k: 1	n:4680000
TP53   4680000 perm   14472 sec   (323 perm/sec)   p_kst 2.136752e-07   p_cons 2.136752e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.865412e-07	k: 0	n:4690000
Cons ci ratio: 2.771858e+00	ci left: 5.398253e-09	ci right 1.187983e-06	k: 1	n:4690000
KS ci ratio: 2.771858e+00	ci left: 5.398253e-09	ci right 1.187983e-06	k: 1	n:4690000
TP53   4690000 perm   14524 sec   (323 perm/sec)   p_kst 2.132196e-07   p_cons 2.132196e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.848677e-07	k: 0	n:4700000
Cons ci ratio: 2.771858e+00	ci left: 5.386768e-09	ci right 1.185455e-06	k: 1	n:4700000
KS ci ratio: 2.771858e+00	ci left: 5.386768e-09	ci right 1.185455e-06	k: 1	n:4700000
TP53   4700000 perm   14577 sec   (322 perm/sec)   p_kst 2.127660e-07   p_cons 2.127660e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.832013e-07	k: 0	n:4710000
Cons ci ratio: 2.771858e+00	ci left: 5.375331e-09	ci right 1.182939e-06	k: 1	n:4710000
KS ci ratio: 2.771858e+00	ci left: 5.375331e-09	ci right 1.182939e-06	k: 1	n:4710000
TP53   4710000 perm   14629 sec   (322 perm/sec)   p_kst 2.123142e-07   p_cons 2.123142e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.815419e-07	k: 0	n:4720000
Cons ci ratio: 2.771858e+00	ci left: 5.363942e-09	ci right 1.180432e-06	k: 1	n:4720000
KS ci ratio: 2.771858e+00	ci left: 5.363942e-09	ci right 1.180432e-06	k: 1	n:4720000
TP53   4720000 perm   14681 sec   (322 perm/sec)   p_kst 2.118644e-07   p_cons 2.118644e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.798896e-07	k: 0	n:4730000
Cons ci ratio: 2.771858e+00	ci left: 5.352602e-09	ci right 1.177937e-06	k: 1	n:4730000
KS ci ratio: 2.771858e+00	ci left: 5.352602e-09	ci right 1.177937e-06	k: 1	n:4730000
TP53   4730000 perm   14733 sec   (321 perm/sec)   p_kst 2.114165e-07   p_cons 2.114165e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.782443e-07	k: 0	n:4740000
Cons ci ratio: 2.771858e+00	ci left: 5.341310e-09	ci right 1.175452e-06	k: 1	n:4740000
KS ci ratio: 2.771858e+00	ci left: 5.341310e-09	ci right 1.175452e-06	k: 1	n:4740000
TP53   4740000 perm   14786 sec   (321 perm/sec)   p_kst 2.109705e-07   p_cons 2.109705e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.766059e-07	k: 0	n:4750000
Cons ci ratio: 2.771858e+00	ci left: 5.330065e-09	ci right 1.172977e-06	k: 1	n:4750000
KS ci ratio: 2.771858e+00	ci left: 5.330065e-09	ci right 1.172977e-06	k: 1	n:4750000
TP53   4750000 perm   14839 sec   (320 perm/sec)   p_kst 2.105263e-07   p_cons 2.105263e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.749744e-07	k: 0	n:4760000
Cons ci ratio: 2.771858e+00	ci left: 5.318867e-09	ci right 1.170513e-06	k: 1	n:4760000
KS ci ratio: 2.771858e+00	ci left: 5.318867e-09	ci right 1.170513e-06	k: 1	n:4760000
TP53   4760000 perm   14891 sec   (320 perm/sec)   p_kst 2.100840e-07   p_cons 2.100840e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.733497e-07	k: 0	n:4770000
Cons ci ratio: 2.771858e+00	ci left: 5.307716e-09	ci right 1.168059e-06	k: 1	n:4770000
KS ci ratio: 2.771858e+00	ci left: 5.307716e-09	ci right 1.168059e-06	k: 1	n:4770000
TP53   4770000 perm   14943 sec   (319 perm/sec)   p_kst 2.096436e-07   p_cons 2.096436e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.717318e-07	k: 0	n:4780000
Cons ci ratio: 2.771858e+00	ci left: 5.296612e-09	ci right 1.165615e-06	k: 1	n:4780000
KS ci ratio: 2.771858e+00	ci left: 5.296612e-09	ci right 1.165615e-06	k: 1	n:4780000
TP53   4780000 perm   14997 sec   (319 perm/sec)   p_kst 2.092050e-07   p_cons 2.092050e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.701207e-07	k: 0	n:4790000
Cons ci ratio: 2.771858e+00	ci left: 5.285555e-09	ci right 1.163182e-06	k: 1	n:4790000
KS ci ratio: 2.771858e+00	ci left: 5.285555e-09	ci right 1.163182e-06	k: 1	n:4790000
TP53   4790000 perm   15049 sec   (318 perm/sec)   p_kst 2.087683e-07   p_cons 2.087683e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.685163e-07	k: 0	n:4800000
Cons ci ratio: 2.771858e+00	ci left: 5.274543e-09	ci right 1.160758e-06	k: 1	n:4800000
KS ci ratio: 2.771858e+00	ci left: 5.274543e-09	ci right 1.160758e-06	k: 1	n:4800000
TP53   4800000 perm   15102 sec   (318 perm/sec)   p_kst 2.083333e-07   p_cons 2.083333e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.669185e-07	k: 0	n:4810000
Cons ci ratio: 2.771858e+00	ci left: 5.263578e-09	ci right 1.158345e-06	k: 1	n:4810000
KS ci ratio: 2.771858e+00	ci left: 5.263578e-09	ci right 1.158345e-06	k: 1	n:4810000
TP53   4810000 perm   15156 sec   (317 perm/sec)   p_kst 2.079002e-07   p_cons 2.079002e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.653274e-07	k: 0	n:4820000
Cons ci ratio: 2.771858e+00	ci left: 5.252657e-09	ci right 1.155942e-06	k: 1	n:4820000
KS ci ratio: 2.771858e+00	ci left: 5.252657e-09	ci right 1.155942e-06	k: 1	n:4820000
TP53   4820000 perm   15210 sec   (317 perm/sec)   p_kst 2.074689e-07   p_cons 2.074689e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.637429e-07	k: 0	n:4830000
Cons ci ratio: 2.771858e+00	ci left: 5.241782e-09	ci right 1.153549e-06	k: 1	n:4830000
KS ci ratio: 2.771858e+00	ci left: 5.241782e-09	ci right 1.153549e-06	k: 1	n:4830000
TP53   4830000 perm   15263 sec   (316 perm/sec)   p_kst 2.070393e-07   p_cons 2.070393e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.621649e-07	k: 0	n:4840000
Cons ci ratio: 2.771858e+00	ci left: 5.230952e-09	ci right 1.151165e-06	k: 1	n:4840000
KS ci ratio: 2.771858e+00	ci left: 5.230952e-09	ci right 1.151165e-06	k: 1	n:4840000
TP53   4840000 perm   15316 sec   (316 perm/sec)   p_kst 2.066116e-07   p_cons 2.066116e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.605934e-07	k: 0	n:4850000
Cons ci ratio: 2.771858e+00	ci left: 5.220167e-09	ci right 1.148792e-06	k: 1	n:4850000
KS ci ratio: 2.771858e+00	ci left: 5.220167e-09	ci right 1.148792e-06	k: 1	n:4850000
TP53   4850000 perm   15369 sec   (316 perm/sec)   p_kst 2.061856e-07   p_cons 2.061856e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.590284e-07	k: 0	n:4860000
Cons ci ratio: 2.771858e+00	ci left: 5.209426e-09	ci right 1.146428e-06	k: 1	n:4860000
KS ci ratio: 2.771858e+00	ci left: 5.209426e-09	ci right 1.146428e-06	k: 1	n:4860000
TP53   4860000 perm   15422 sec   (315 perm/sec)   p_kst 2.057613e-07   p_cons 2.057613e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.574698e-07	k: 0	n:4870000
Cons ci ratio: 2.771858e+00	ci left: 5.198729e-09	ci right 1.144074e-06	k: 1	n:4870000
KS ci ratio: 2.771858e+00	ci left: 5.198729e-09	ci right 1.144074e-06	k: 1	n:4870000
TP53   4870000 perm   15476 sec   (315 perm/sec)   p_kst 2.053388e-07   p_cons 2.053388e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.559176e-07	k: 0	n:4880000
Cons ci ratio: 2.771858e+00	ci left: 5.188076e-09	ci right 1.141730e-06	k: 1	n:4880000
KS ci ratio: 2.771858e+00	ci left: 5.188076e-09	ci right 1.141730e-06	k: 1	n:4880000
TP53   4880000 perm   15529 sec   (314 perm/sec)   p_kst 2.049180e-07   p_cons 2.049180e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.543718e-07	k: 0	n:4890000
Cons ci ratio: 2.771858e+00	ci left: 5.177466e-09	ci right 1.139395e-06	k: 1	n:4890000
KS ci ratio: 2.771858e+00	ci left: 5.177466e-09	ci right 1.139395e-06	k: 1	n:4890000
TP53   4890000 perm   15582 sec   (314 perm/sec)   p_kst 2.044990e-07   p_cons 2.044990e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.528323e-07	k: 0	n:4900000
Cons ci ratio: 2.771858e+00	ci left: 5.166900e-09	ci right 1.137070e-06	k: 1	n:4900000
KS ci ratio: 2.771858e+00	ci left: 5.166900e-09	ci right 1.137070e-06	k: 1	n:4900000
TP53   4900000 perm   15636 sec   (313 perm/sec)   p_kst 2.040816e-07   p_cons 2.040816e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.512990e-07	k: 0	n:4910000
Cons ci ratio: 2.771858e+00	ci left: 5.156376e-09	ci right 1.134754e-06	k: 1	n:4910000
KS ci ratio: 2.771858e+00	ci left: 5.156376e-09	ci right 1.134754e-06	k: 1	n:4910000
TP53   4910000 perm   15690 sec   (313 perm/sec)   p_kst 2.036660e-07   p_cons 2.036660e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.497720e-07	k: 0	n:4920000
Cons ci ratio: 2.771858e+00	ci left: 5.145896e-09	ci right 1.132447e-06	k: 1	n:4920000
KS ci ratio: 2.771858e+00	ci left: 5.145896e-09	ci right 1.132447e-06	k: 1	n:4920000
TP53   4920000 perm   15745 sec   (312 perm/sec)   p_kst 2.032520e-07   p_cons 2.032520e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.482511e-07	k: 0	n:4930000
Cons ci ratio: 2.771858e+00	ci left: 5.135458e-09	ci right 1.130150e-06	k: 1	n:4930000
KS ci ratio: 2.771858e+00	ci left: 5.135458e-09	ci right 1.130150e-06	k: 1	n:4930000
TP53   4930000 perm   15799 sec   (312 perm/sec)   p_kst 2.028398e-07   p_cons 2.028398e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.467365e-07	k: 0	n:4940000
Cons ci ratio: 2.771858e+00	ci left: 5.125062e-09	ci right 1.127863e-06	k: 1	n:4940000
KS ci ratio: 2.771858e+00	ci left: 5.125062e-09	ci right 1.127863e-06	k: 1	n:4940000
TP53   4940000 perm   15854 sec   (312 perm/sec)   p_kst 2.024291e-07   p_cons 2.024291e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.452279e-07	k: 0	n:4950000
Cons ci ratio: 2.771858e+00	ci left: 5.114709e-09	ci right 1.125584e-06	k: 1	n:4950000
KS ci ratio: 2.771858e+00	ci left: 5.114709e-09	ci right 1.125584e-06	k: 1	n:4950000
TP53   4950000 perm   15908 sec   (311 perm/sec)   p_kst 2.020202e-07   p_cons 2.020202e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.437254e-07	k: 0	n:4960000
Cons ci ratio: 2.771858e+00	ci left: 5.104397e-09	ci right 1.123315e-06	k: 1	n:4960000
KS ci ratio: 2.771858e+00	ci left: 5.104397e-09	ci right 1.123315e-06	k: 1	n:4960000
TP53   4960000 perm   15963 sec   (311 perm/sec)   p_kst 2.016129e-07   p_cons 2.016129e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.422290e-07	k: 0	n:4970000
Cons ci ratio: 2.771858e+00	ci left: 5.094126e-09	ci right 1.121054e-06	k: 1	n:4970000
KS ci ratio: 2.771858e+00	ci left: 5.094126e-09	ci right 1.121054e-06	k: 1	n:4970000
TP53   4970000 perm   16018 sec   (310 perm/sec)   p_kst 2.012072e-07   p_cons 2.012072e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.407386e-07	k: 0	n:4980000
Cons ci ratio: 2.771858e+00	ci left: 5.083897e-09	ci right 1.118803e-06	k: 1	n:4980000
KS ci ratio: 2.771858e+00	ci left: 5.083897e-09	ci right 1.118803e-06	k: 1	n:4980000
TP53   4980000 perm   16073 sec   (310 perm/sec)   p_kst 2.008032e-07   p_cons 2.008032e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.392541e-07	k: 0	n:4990000
Cons ci ratio: 2.771858e+00	ci left: 5.073709e-09	ci right 1.116561e-06	k: 1	n:4990000
KS ci ratio: 2.771858e+00	ci left: 5.073709e-09	ci right 1.116561e-06	k: 1	n:4990000
TP53   4990000 perm   16129 sec   (309 perm/sec)   p_kst 2.004008e-07   p_cons 2.004008e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.377756e-07	k: 0	n:5000000
Cons ci ratio: 2.771858e+00	ci left: 5.063562e-09	ci right 1.114328e-06	k: 1	n:5000000
KS ci ratio: 2.771858e+00	ci left: 5.063562e-09	ci right 1.114328e-06	k: 1	n:5000000
TP53   5000000 perm   16185 sec   (309 perm/sec)   p_kst 2.000000e-07   p_cons 2.000000e-07   p_joint 0

Outputting figure to mutsig2_images.part000000000180/TP53.144_1311_5000000_2e-07_2e-07_0.png
                gene_name: TP53
               theta_stop: 3.9 
                    nperm: 5000000 
                     p_ks: 2.00e-07 
        ci_ks_bounds_left: 5.06e-09 
       ci_ks_bounds_right: 1.11e-06 
                   p_cons: 2.00e-07 
      ci_cons_bounds_left: 5.06e-09 
     ci_cons_bounds_right: 1.11e-06 
                  p_joint: 0 
     ci_joint_bounds_left: 0 
    ci_joint_bounds_right: 7.38e-07 

Current progress: 2 percent done.
TPTE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.375241e-02	ci left: 4.354264e-01	ci right 4.550056e-01	k: 4452	n:10000
Cons ci ratio: 5.752610e-02	ci left: 3.078845e-01	ci right 3.262222e-01	k: 3170	n:10000
KS ci ratio: 3.105166e-02	ci left: 6.047779e-01	ci right 6.239554e-01	k: 6144	n:10000
TPTE   10000 perm   3 sec   (3635 perm/sec)   p_kst 6.144000e-01   p_cons 3.170000e-01   p_joint 4.452000e-01

Outputting figure to mutsig2_images.part000000000180/TPTE.30_1740_10000_0.6144_0.317_0.4452.png
                gene_name: TPTE
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 5 percent done.
TPR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.164260e-02	ci left: 9.134796e-01	ci right 9.242749e-01	k: 9190	n:10000
Cons ci ratio: 2.235422e-02	ci left: 7.460424e-01	ci right 7.630091e-01	k: 7546	n:10000
KS ci ratio: 1.972311e-02	ci left: 7.899946e-01	ci right 8.058315e-01	k: 7980	n:10000
TPR   10000 perm   4 sec   (2847 perm/sec)   p_kst 7.980000e-01   p_cons 7.546000e-01   p_joint 9.190000e-01

Outputting figure to mutsig2_images.part000000000180/TPR.18_7296_10000_0.798_0.7546_0.919.png
                gene_name: TPR
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 7 percent done.
TPO
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.168258e-02	ci left: 2.218801e-01	ci right 2.384774e-01	k: 2301	n:10000
Cons ci ratio: 4.510603e-02	ci left: 4.204677e-01	ci right 4.399730e-01	k: 4302	n:10000
KS ci ratio: 1.039952e-01	ci left: 1.178937e-01	ci right 1.309260e-01	k: 1243	n:10000
TPO   10000 perm   2 sec   (4844 perm/sec)   p_kst 1.243000e-01   p_cons 4.302000e-01   p_joint 2.301000e-01

Joint ci ratio: 5.807201e-02	ci left: 1.801340e-01	ci right 1.909576e-01	k: 3710	n:20000
Cons ci ratio: 3.184239e-02	ci left: 4.241721e-01	ci right 4.379479e-01	k: 8621	n:20000
KS ci ratio: 7.255777e-02	ci left: 1.227101e-01	ci right 1.319986e-01	k: 2546	n:20000
TPO   20000 perm   5 sec   (4337 perm/sec)   p_kst 1.273000e-01   p_cons 4.310500e-01   p_joint 1.855000e-01

Outputting figure to mutsig2_images.part000000000180/TPO.10_2866_20000_0.1273_0.43105_0.1855.png
                gene_name: TPO
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 9 percent done.
TPTE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.847290e-02	ci left: 8.106001e-01	ci right 8.258141e-01	k: 8183	n:10000
Cons ci ratio: 5.061829e-02	ci left: 3.653000e-01	ci right 3.843730e-01	k: 3748	n:10000
KS ci ratio: 1.885064e-02	ci left: 8.044048e-01	ci right 8.198129e-01	k: 8122	n:10000
TPTE2   10000 perm   2 sec   (4754 perm/sec)   p_kst 8.122000e-01   p_cons 3.748000e-01   p_joint 8.183000e-01

Outputting figure to mutsig2_images.part000000000180/TPTE2.8_1649_10000_0.8122_0.3748_0.8183.png
                gene_name: TPTE2
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 12 percent done.
TOPORS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.104622e-02	ci left: 9.212101e-01	ci right 9.315399e-01	k: 9265	n:10000
Cons ci ratio: 1.891855e-02	ci left: 8.032880e-01	ci right 8.187304e-01	k: 8111	n:10000
KS ci ratio: 3.027713e-02	ci left: 6.167323e-01	ci right 6.357941e-01	k: 6263	n:10000
TOPORS   10000 perm   2 sec   (5076 perm/sec)   p_kst 6.263000e-01   p_cons 8.111000e-01   p_joint 9.265000e-01

Outputting figure to mutsig2_images.part000000000180/TOPORS.7_3150_10000_0.6263_0.8111_0.9265.png
                gene_name: TOPORS
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 14 percent done.
TOP3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.788029e-02	ci left: 8.202549e-01	ci right 8.351537e-01	k: 8278	n:10000
Cons ci ratio: 1.998574e-02	ci left: 7.856340e-01	ci right 8.015946e-01	k: 7937	n:10000
KS ci ratio: 2.290325e-02	ci left: 7.368421e-01	ci right 7.540147e-01	k: 7455	n:10000
TOP3A   10000 perm   2 sec   (4860 perm/sec)   p_kst 7.455000e-01   p_cons 7.937000e-01   p_joint 8.278000e-01

Outputting figure to mutsig2_images.part000000000180/TOP3A.6_3082_10000_0.7455_0.7937_0.8278.png
                gene_name: TOP3A
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 16 percent done.
TPH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.434755e-02	ci left: 7.127015e-01	ci right 7.303692e-01	k: 7216	n:10000
KS ci ratio: 1.282976e-02	ci left: 8.973393e-01	ci right 9.090246e-01	k: 9033	n:10000
TPH2   10000 perm   2 sec   (5306 perm/sec)   p_kst 9.033000e-01   p_cons 7.216000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000180/TPH2.6_1517_10000_0.9033_0.7216_1.png
                gene_name: TPH2
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 19 percent done.
TOMM70A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.925720e-02	ci left: 6.327145e-01	ci right 6.516026e-01	k: 6422	n:10000
Cons ci ratio: 9.442515e-02	ci left: 1.400152e-01	ci right 1.539911e-01	k: 1469	n:10000
KS ci ratio: 3.811184e-02	ci left: 5.041511e-01	ci right 5.238407e-01	k: 5140	n:10000
TOMM70A   10000 perm   2 sec   (5729 perm/sec)   p_kst 5.140000e-01   p_cons 1.469000e-01   p_joint 6.422000e-01

Outputting figure to mutsig2_images.part000000000180/TOMM70A.5_1875_10000_0.514_0.1469_0.6422.png
                gene_name: TOMM70A
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 21 percent done.
TOPBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.979435e-02	ci left: 4.825547e-01	ci right 5.022497e-01	k: 4924	n:10000
Cons ci ratio: 5.849639e-02	ci left: 3.007434e-01	ci right 3.189675e-01	k: 3098	n:10000
KS ci ratio: 3.791403e-02	ci left: 5.067519e-01	ci right 5.264384e-01	k: 5166	n:10000
TOPBP1   10000 perm   2 sec   (4051 perm/sec)   p_kst 5.166000e-01   p_cons 3.098000e-01   p_joint 4.924000e-01

Outputting figure to mutsig2_images.part000000000180/TOPBP1.5_4677_10000_0.5166_0.3098_0.4924.png
                gene_name: TOPBP1
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 23 percent done.
TP53BP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.760851e-02	ci left: 6.590747e-01	ci right 6.776271e-01	k: 6684	n:10000
KS ci ratio: 2.576490e-02	ci left: 6.891970e-01	ci right 7.072873e-01	k: 6983	n:10000
TP53BP1   10000 perm   3 sec   (3538 perm/sec)   p_kst 6.983000e-01   p_cons 6.684000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000180/TP53BP1.5_6046_10000_0.6983_0.6684_1.png
                gene_name: TP53BP1
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 26 percent done.
TPCN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.479894e-02	ci left: 3.291243e-01	ci right 3.477699e-01	k: 3384	n:10000
Cons ci ratio: 1.078422e-01	ci left: 1.103719e-01	ci right 1.230523e-01	k: 1166	n:10000
KS ci ratio: 3.737120e-02	ci left: 5.139556e-01	ci right 5.336306e-01	k: 5238	n:10000
TPCN2   10000 perm   2 sec   (5886 perm/sec)   p_kst 5.238000e-01   p_cons 1.166000e-01   p_joint 3.384000e-01

Joint ci ratio: 4.375320e-02	ci left: 2.800914e-01	ci right 2.926708e-01	k: 5727	n:20000
Cons ci ratio: 7.638710e-02	ci left: 1.118880e-01	ci right 1.208239e-01	k: 2326	n:20000
KS ci ratio: 2.611904e-02	ci left: 5.227038e-01	ci right 5.365876e-01	k: 10593	n:20000
TPCN2   20000 perm   4 sec   (5164 perm/sec)   p_kst 5.296500e-01   p_cons 1.163000e-01   p_joint 2.863500e-01

Outputting figure to mutsig2_images.part000000000180/TPCN2.5_2359_20000_0.52965_0.1163_0.28635.png
                gene_name: TPCN2
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 28 percent done.
TPK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.419274e-02	ci left: 3.340900e-01	ci right 3.528013e-01	k: 3434	n:10000
Cons ci ratio: 1.429991e-02	ci left: 8.761293e-01	ci right 8.888470e-01	k: 8826	n:10000
KS ci ratio: 7.698126e-02	ci left: 1.979127e-01	ci right 2.138590e-01	k: 2058	n:10000
TPK1   10000 perm   2 sec   (6432 perm/sec)   p_kst 2.058000e-01   p_cons 8.826000e-01   p_joint 3.434000e-01

Outputting figure to mutsig2_images.part000000000180/TPK1.5_764_10000_0.2058_0.8826_0.3434.png
                gene_name: TPK1
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 30 percent done.
TOP2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.606481e-02	ci left: 6.842576e-01	ci right 7.024297e-01	k: 6934	n:10000
KS ci ratio: 2.607094e-02	ci left: 6.841568e-01	ci right 7.023305e-01	k: 6933	n:10000
TOP2B   10000 perm   2 sec   (4198 perm/sec)   p_kst 6.933000e-01   p_cons 6.934000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000180/TOP2B.4_5010_10000_0.6933_0.6934_1.png
                gene_name: TOP2B
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 33 percent done.
TOP3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.126047e-02	ci left: 2.239532e-01	ci right 2.406030e-01	k: 2322	n:10000
Cons ci ratio: 1.197356e-01	ci left: 9.097541e-02	ci right 1.026607e-01	k: 967	n:10000
KS ci ratio: 7.138054e-02	ci left: 2.233609e-01	ci right 2.399957e-01	k: 2316	n:10000
TOP3B   10000 perm   2 sec   (5193 perm/sec)   p_kst 2.316000e-01   p_cons 9.670000e-02   p_joint 2.322000e-01

Joint ci ratio: 8.045436e-02	ci left: 1.018153e-01	ci right 1.103996e-01	k: 2121	n:20000
Cons ci ratio: 8.532785e-02	ci left: 9.136270e-02	ci right 9.955535e-02	k: 1908	n:20000
KS ci ratio: 5.112061e-02	ci left: 2.213582e-01	ci right 2.330212e-01	k: 4543	n:20000
TOP3B   20000 perm   4 sec   (4616 perm/sec)   p_kst 2.271500e-01   p_cons 9.540000e-02   p_joint 1.060500e-01

Outputting figure to mutsig2_images.part000000000180/TOP3B.4_2657_20000_0.22715_0.0954_0.10605.png
                gene_name: TOP3B
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.095 
      ci_cons_bounds_left: 0.091 
     ci_cons_bounds_right: 0.100 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 35 percent done.
TOR1AIP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.400364e-02	ci left: 2.109269e-01	ci right 2.272370e-01	k: 2190	n:10000
Cons ci ratio: 9.939328e-02	ci left: 1.278700e-01	ci right 1.413437e-01	k: 1345	n:10000
KS ci ratio: 4.891266e-02	ci left: 3.814188e-01	ci right 4.006447e-01	k: 3910	n:10000
TOR1AIP2   10000 perm   2 sec   (5449 perm/sec)   p_kst 3.910000e-01   p_cons 1.345000e-01   p_joint 2.190000e-01

Outputting figure to mutsig2_images.part000000000180/TOR1AIP2.4_1829_10000_0.391_0.1345_0.219.png
                gene_name: TOR1AIP2
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 37 percent done.
TOX3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.598151e-02	ci left: 4.110981e-01	ci right 4.305480e-01	k: 4208	n:10000
Cons ci ratio: 3.145934e-02	ci left: 5.985520e-01	ci right 6.177849e-01	k: 6082	n:10000
KS ci ratio: 6.719645e-02	ci left: 2.452932e-01	ci right 2.624504e-01	k: 2538	n:10000
TOX3   10000 perm   2 sec   (5823 perm/sec)   p_kst 2.538000e-01   p_cons 6.082000e-01   p_joint 4.208000e-01

Outputting figure to mutsig2_images.part000000000180/TOX3.4_1838_10000_0.2538_0.6082_0.4208.png
                gene_name: TOX3
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 40 percent done.
TPP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.274646e-01	ci left: 8.086735e-02	ci right 9.197496e-02	k: 863	n:10000
Cons ci ratio: 2.162892e-01	ci left: 2.835310e-02	ci right 3.532314e-02	k: 317	n:10000
KS ci ratio: 1.469696e-02	ci left: 8.701983e-01	ci right 8.831813e-01	k: 8768	n:10000
TPP1   10000 perm   2 sec   (6289 perm/sec)   p_kst 8.768000e-01   p_cons 3.170000e-02   p_joint 8.630000e-02

Joint ci ratio: 7.210431e-02	ci left: 1.240883e-01	ci right 1.334200e-01	k: 2574	n:20000
Cons ci ratio: 1.605304e-01	ci left: 2.662195e-02	ci right 3.131633e-02	k: 578	n:20000
KS ci ratio: 1.049440e-02	ci left: 8.699815e-01	ci right 8.792092e-01	k: 17493	n:20000
TPP1   20000 perm   4 sec   (5491 perm/sec)   p_kst 8.746500e-01   p_cons 2.890000e-02   p_joint 1.287000e-01

Joint ci ratio: 7.162986e-02	ci left: 8.750616e-02	ci right 9.404001e-02	k: 2722	n:30000
Cons ci ratio: 1.294329e-01	ci left: 2.774345e-02	ci right 3.161501e-02	k: 889	n:30000
KS ci ratio: 8.596345e-03	ci left: 8.701244e-01	ci right 8.776697e-01	k: 26218	n:30000
TPP1   30000 perm   6 sec   (5221 perm/sec)   p_kst 8.739333e-01   p_cons 2.963333e-02   p_joint 9.073333e-02

Joint ci ratio: 5.952128e-02	ci left: 9.490579e-02	ci right 1.007527e-01	k: 3912	n:40000
Cons ci ratio: 1.117856e-01	ci left: 2.815539e-02	ci right 3.151333e-02	k: 1192	n:40000
KS ci ratio: 7.547495e-03	ci left: 8.675493e-01	ci right 8.741467e-01	k: 34835	n:40000
TPP1   40000 perm   8 sec   (5038 perm/sec)   p_kst 8.708750e-01   p_cons 2.980000e-02   p_joint 9.780000e-02

Joint ci ratio: 5.078805e-02	ci left: 1.037497e-01	ci right 1.091761e-01	k: 5322	n:50000
Cons ci ratio: 9.968326e-02	ci left: 2.850258e-02	ci right 3.151231e-02	k: 1499	n:50000
KS ci ratio: 6.745071e-03	ci left: 8.680909e-01	ci right 8.739859e-01	k: 43553	n:50000
TPP1   50000 perm   10 sec   (4891 perm/sec)   p_kst 8.710600e-01   p_cons 2.998000e-02   p_joint 1.064400e-01

Outputting figure to mutsig2_images.part000000000180/TPP1.4_1744_50000_0.87106_0.02998_0.10644.png
                gene_name: TPP1
               theta_stop: 0.100 
                    nperm: 50000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.030 
      ci_cons_bounds_left: 0.029 
     ci_cons_bounds_right: 0.032 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 42 percent done.
TRAF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.035235e-02	ci left: 2.876580e-01	ci right 3.056606e-01	k: 2966	n:10000
Cons ci ratio: 2.059430e-02	ci left: 7.754984e-01	ci right 7.917361e-01	k: 7837	n:10000
KS ci ratio: 9.338490e-02	ci left: 1.427601e-01	ci right 1.568446e-01	k: 1497	n:10000
TRAF1   10000 perm   2 sec   (5892 perm/sec)   p_kst 1.497000e-01   p_cons 7.837000e-01   p_joint 2.966000e-01

Outputting figure to mutsig2_images.part000000000180/TRAF1.4_1279_10000_0.1497_0.7837_0.2966.png
                gene_name: TRAF1
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 44 percent done.
TOP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.505339e-01	ci left: 5.870163e-02	ci right 6.835455e-02	k: 634	n:10000
Cons ci ratio: 1.542902e-02	ci left: 8.590646e-01	ci right 8.725215e-01	k: 8659	n:10000
KS ci ratio: 4.772737e-01	ci left: 5.108009e-03	ci right 8.389267e-03	k: 66	n:10000
TOP1   10000 perm   2 sec   (5441 perm/sec)   p_kst 6.600000e-03   p_cons 8.659000e-01   p_joint 6.340000e-02

Joint ci ratio: 1.558784e-01	ci left: 2.825647e-02	ci right 3.308125e-02	k: 612	n:20000
Cons ci ratio: 1.092315e-02	ci left: 8.607948e-01	ci right 8.702987e-01	k: 17312	n:20000
KS ci ratio: 3.481110e-01	ci left: 5.205045e-03	ci right 7.442133e-03	k: 125	n:20000
TOP1   20000 perm   4 sec   (4855 perm/sec)   p_kst 6.250000e-03   p_cons 8.656000e-01   p_joint 3.060000e-02

Joint ci ratio: 1.076870e-01	ci left: 4.001771e-02	ci right 4.460480e-02	k: 1268	n:30000
Cons ci ratio: 8.979686e-03	ci left: 8.600691e-01	ci right 8.678602e-01	k: 25920	n:30000
KS ci ratio: 2.896822e-01	ci left: 5.188478e-03	ci right 6.975876e-03	k: 181	n:30000
TOP1   30000 perm   7 sec   (4534 perm/sec)   p_kst 6.033333e-03   p_cons 8.640000e-01   p_joint 4.226667e-02

Joint ci ratio: 1.178836e-01	ci left: 2.531211e-02	ci right 2.850707e-02	k: 1075	n:40000
Cons ci ratio: 7.773224e-03	ci left: 8.607028e-01	ci right 8.674442e-01	k: 34564	n:40000
KS ci ratio: 2.512206e-01	ci left: 5.290163e-03	ci right 6.832869e-03	k: 241	n:40000
TOP1   40000 perm   9 sec   (4404 perm/sec)   p_kst 6.025000e-03   p_cons 8.641000e-01   p_joint 2.687500e-02

Joint ci ratio: 1.703446e-01	ci left: 9.586755e-03	ci right 1.139076e-02	k: 523	n:50000
Cons ci ratio: 6.948383e-03	ci left: 8.612065e-01	ci right 8.672312e-01	k: 43212	n:50000
KS ci ratio: 2.340263e-01	ci left: 4.927077e-03	ci right 6.251319e-03	k: 278	n:50000
TOP1   50000 perm   12 sec   (4316 perm/sec)   p_kst 5.560000e-03   p_cons 8.642400e-01   p_joint 1.046000e-02

Joint ci ratio: 1.161918e-01	ci left: 1.753393e-02	ci right 1.971298e-02	k: 1116	n:60000
Cons ci ratio: 6.373271e-03	ci left: 8.603405e-01	ci right 8.658577e-01	k: 51787	n:60000
KS ci ratio: 1.960856e-01	ci left: 5.967726e-03	ci right 7.280681e-03	k: 396	n:60000
TOP1   60000 perm   14 sec   (4227 perm/sec)   p_kst 6.600000e-03   p_cons 8.631167e-01   p_joint 1.860000e-02

Joint ci ratio: 1.402110e-01	ci left: 1.026809e-02	ci right 1.182998e-02	k: 772	n:70000
Cons ci ratio: 5.896615e-03	ci left: 8.607041e-01	ci right 8.658086e-01	k: 60429	n:70000
KS ci ratio: 1.846077e-01	ci left: 5.809024e-03	ci right 7.003874e-03	k: 447	n:70000
TOP1   70000 perm   17 sec   (4146 perm/sec)   p_kst 6.385714e-03   p_cons 8.632714e-01   p_joint 1.102857e-02

Joint ci ratio: 1.311126e-01	ci left: 1.032504e-02	ci right 1.178574e-02	k: 883	n:80000
Cons ci ratio: 5.522103e-03	ci left: 8.605979e-01	ci right 8.653758e-01	k: 69040	n:80000
KS ci ratio: 1.715088e-01	ci left: 5.930915e-03	ci right 7.055324e-03	k: 518	n:80000
TOP1   80000 perm   20 sec   (4070 perm/sec)   p_kst 6.475000e-03   p_cons 8.630000e-01   p_joint 1.103750e-02

Joint ci ratio: 1.232077e-01	ci left: 1.043652e-02	ci right 1.181748e-02	k: 1000	n:90000
Cons ci ratio: 5.198447e-03	ci left: 8.610943e-01	ci right 8.655933e-01	k: 77702	n:90000
KS ci ratio: 1.612663e-01	ci left: 5.996056e-03	ci right 7.058349e-03	k: 586	n:90000
TOP1   90000 perm   22 sec   (4000 perm/sec)   p_kst 6.511111e-03   p_cons 8.633556e-01   p_joint 1.111111e-02

Joint ci ratio: 1.192508e-01	ci left: 1.005213e-02	ci right 1.133649e-02	k: 1068	n:100000
Cons ci ratio: 4.925724e-03	ci left: 8.614975e-01	ci right 8.657614e-01	k: 86364	n:100000
KS ci ratio: 1.531353e-01	ci left: 6.011289e-03	ci right 7.017656e-03	k: 650	n:100000
TOP1   100000 perm   25 sec   (3930 perm/sec)   p_kst 6.500000e-03   p_cons 8.636400e-01   p_joint 1.068000e-02

Joint ci ratio: 1.240233e-01	ci left: 8.441521e-03	ci right 9.566413e-03	k: 989	n:110000
Cons ci ratio: 4.691302e-03	ci left: 8.618595e-01	ci right 8.659213e-01	k: 95029	n:110000
KS ci ratio: 1.473717e-01	ci left: 5.919745e-03	ci right 6.870199e-03	k: 702	n:110000
TOP1   110000 perm   28 sec   (3864 perm/sec)   p_kst 6.381818e-03   p_cons 8.639000e-01   p_joint 8.990909e-03

Joint ci ratio: 1.186879e-01	ci left: 8.473388e-03	ci right 9.550541e-03	k: 1080	n:120000
Cons ci ratio: 4.351765e-03	ci left: 8.692580e-01	ci right 8.730573e-01	k: 104540	n:120000
KS ci ratio: 1.400819e-01	ci left: 6.028990e-03	ci right 6.945105e-03	k: 777	n:120000
TOP1   120000 perm   32 sec   (3800 perm/sec)   p_kst 6.475000e-03   p_cons 8.711667e-01   p_joint 9.000000e-03

Joint ci ratio: 1.140358e-01	ci left: 8.493754e-03	ci right 9.528325e-03	k: 1170	n:130000
Cons ci ratio: 4.178552e-03	ci left: 8.694675e-01	ci right 8.731159e-01	k: 113269	n:130000
KS ci ratio: 1.355475e-01	ci left: 5.958844e-03	ci right 6.832624e-03	k: 830	n:130000
TOP1   130000 perm   35 sec   (3729 perm/sec)   p_kst 6.384615e-03   p_cons 8.713000e-01   p_joint 9.000000e-03

Joint ci ratio: 1.091079e-01	ci left: 8.636998e-03	ci right 9.640633e-03	k: 1278	n:140000
Cons ci ratio: 4.026422e-03	ci left: 8.695418e-01	ci right 8.730571e-01	k: 121983	n:140000
KS ci ratio: 1.293089e-01	ci left: 6.099557e-03	ci right 6.949647e-03	k: 912	n:140000
TOP1   140000 perm   38 sec   (3663 perm/sec)   p_kst 6.514286e-03   p_cons 8.713071e-01   p_joint 9.128571e-03

Joint ci ratio: 1.051514e-01	ci left: 8.697042e-03	ci right 9.668739e-03	k: 1376	n:150000
Cons ci ratio: 3.890707e-03	ci left: 8.695546e-01	ci right 8.729510e-01	k: 130689	n:150000
KS ci ratio: 1.243634e-01	ci left: 6.170617e-03	ci right 6.995296e-03	k: 986	n:150000
TOP1   150000 perm   42 sec   (3602 perm/sec)   p_kst 6.573333e-03   p_cons 8.712600e-01   p_joint 9.173333e-03

Joint ci ratio: 1.057253e-01	ci left: 8.068145e-03	ci right 8.974799e-03	k: 1362	n:160000
Cons ci ratio: 3.771103e-03	ci left: 8.693728e-01	ci right 8.726637e-01	k: 139364	n:160000
KS ci ratio: 1.204604e-01	ci left: 6.178766e-03	ci right 6.976771e-03	k: 1051	n:160000
TOP1   160000 perm   45 sec   (3543 perm/sec)   p_kst 6.568750e-03   p_cons 8.710250e-01   p_joint 8.512500e-03

Joint ci ratio: 1.023617e-01	ci left: 8.114924e-03	ci right 8.996077e-03	k: 1453	n:170000
Cons ci ratio: 3.650192e-03	ci left: 8.699354e-01	ci right 8.731225e-01	k: 148161	n:170000
KS ci ratio: 1.164841e-01	ci left: 6.232007e-03	ci right 7.008492e-03	k: 1124	n:170000
TOP1   170000 perm   49 sec   (3487 perm/sec)   p_kst 6.611765e-03   p_cons 8.715353e-01   p_joint 8.547059e-03

Joint ci ratio: 9.965835e-02	ci left: 8.097308e-03	ci right 8.951968e-03	k: 1533	n:180000
Cons ci ratio: 3.547114e-03	ci left: 8.699955e-01	ci right 8.730925e-01	k: 156879	n:180000
KS ci ratio: 1.134988e-01	ci left: 6.209526e-03	ci right 6.962053e-03	k: 1184	n:180000
TOP1   180000 perm   52 sec   (3434 perm/sec)   p_kst 6.577778e-03   p_cons 8.715500e-01   p_joint 8.516667e-03

Joint ci ratio: 9.709782e-02	ci left: 8.092093e-03	ci right 8.923008e-03	k: 1615	n:190000
Cons ci ratio: 3.453357e-03	ci left: 8.699817e-01	ci right 8.729964e-01	k: 165584	n:190000
KS ci ratio: 1.105087e-01	ci left: 6.215232e-03	ci right 6.947313e-03	k: 1249	n:190000
TOP1   190000 perm   56 sec   (3380 perm/sec)   p_kst 6.573684e-03   p_cons 8.714947e-01   p_joint 8.500000e-03

Joint ci ratio: 9.450075e-02	ci left: 8.126714e-03	ci right 8.937628e-03	k: 1705	n:200000
Cons ci ratio: 3.366512e-03	ci left: 8.699803e-01	ci right 8.729190e-01	k: 174291	n:200000
KS ci ratio: 1.076196e-01	ci left: 6.235199e-03	ci right 6.949215e-03	k: 1317	n:200000
TOP1   200000 perm   60 sec   (3330 perm/sec)   p_kst 6.585000e-03   p_cons 8.714550e-01   p_joint 8.525000e-03

Joint ci ratio: 9.210151e-02	ci left: 8.158305e-03	ci right 8.950588e-03	k: 1795	n:210000
Cons ci ratio: 3.283391e-03	ci left: 8.701521e-01	ci right 8.730186e-01	k: 183034	n:210000
KS ci ratio: 1.047938e-01	ci left: 6.272041e-03	ci right 6.970254e-03	k: 1389	n:210000
TOP1   210000 perm   64 sec   (3282 perm/sec)   p_kst 6.614286e-03   p_cons 8.715905e-01   p_joint 8.547619e-03

Joint ci ratio: 9.014172e-02	ci left: 8.138376e-03	ci right 8.911020e-03	k: 1874	n:220000
Cons ci ratio: 3.204700e-03	ci left: 8.704096e-01	ci right 8.732079e-01	k: 191799	n:220000
KS ci ratio: 1.026398e-01	ci left: 6.248169e-03	ci right 6.928566e-03	k: 1448	n:220000
TOP1   220000 perm   68 sec   (3232 perm/sec)   p_kst 6.581818e-03   p_cons 8.718136e-01   p_joint 8.518182e-03

Joint ci ratio: 8.818820e-02	ci left: 8.141608e-03	ci right 8.896943e-03	k: 1958	n:230000
Cons ci ratio: 3.138228e-03	ci left: 8.701561e-01	ci right 8.728954e-01	k: 200452	n:230000
KS ci ratio: 1.004126e-01	ci left: 6.251943e-03	ci right 6.917105e-03	k: 1513	n:230000
TOP1   230000 perm   72 sec   (3185 perm/sec)   p_kst 6.578261e-03   p_cons 8.715304e-01   p_joint 8.513043e-03

Joint ci ratio: 8.663485e-02	ci left: 8.091731e-03	ci right 8.828547e-03	k: 2029	n:240000
Cons ci ratio: 3.074112e-03	ci left: 8.700416e-01	ci right 8.727244e-01	k: 209133	n:240000
KS ci ratio: 9.873424e-02	ci left: 6.202708e-03	ci right 6.850963e-03	k: 1565	n:240000
TOP1   240000 perm   76 sec   (3142 perm/sec)   p_kst 6.520833e-03   p_cons 8.713875e-01   p_joint 8.454167e-03

Outputting figure to mutsig2_images.part000000000180/TOP1.3_2382_240000_0.0065208_0.87139_0.0084542.png
                gene_name: TOP1
               theta_stop: 0.099 
                    nperm: 240000 
                     p_ks: 0.0065 
        ci_ks_bounds_left: 0.0062 
       ci_ks_bounds_right: 0.0069 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.0085 
     ci_joint_bounds_left: 0.0081 
    ci_joint_bounds_right: 0.0088 

Current progress: 47 percent done.
TOX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.310124e-02	ci left: 5.739652e-01	ci right 5.933860e-01	k: 5837	n:10000
Cons ci ratio: 6.267260e-02	ci left: 2.723040e-01	ci right 2.900236e-01	k: 2811	n:10000
KS ci ratio: 3.927257e-02	ci left: 4.891517e-01	ci right 5.088489e-01	k: 4990	n:10000
TOX   10000 perm   2 sec   (5957 perm/sec)   p_kst 4.990000e-01   p_cons 2.811000e-01   p_joint 5.837000e-01

Outputting figure to mutsig2_images.part000000000180/TOX.3_1617_10000_0.499_0.2811_0.5837.png
                gene_name: TOX
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 49 percent done.
TOX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.037572e-01	ci left: 1.183824e-01	ci right 1.314370e-01	k: 1248	n:10000
Cons ci ratio: 1.030513e-01	ci left: 1.198488e-01	ci right 1.329697e-01	k: 1263	n:10000
KS ci ratio: 7.717009e-02	ci left: 1.971244e-01	ci right 2.130478e-01	k: 2050	n:10000
TOX2   10000 perm   2 sec   (5849 perm/sec)   p_kst 2.050000e-01   p_cons 1.263000e-01   p_joint 1.248000e-01

Joint ci ratio: 5.449296e-02	ci left: 1.999181e-01	ci right 2.111676e-01	k: 4110	n:20000
Cons ci ratio: 7.340230e-02	ci left: 1.202003e-01	ci right 1.294091e-01	k: 2495	n:20000
KS ci ratio: 5.426872e-02	ci left: 2.012544e-01	ci right 2.125310e-01	k: 4137	n:20000
TOX2   20000 perm   4 sec   (5133 perm/sec)   p_kst 2.068500e-01   p_cons 1.247500e-01   p_joint 2.055000e-01

Outputting figure to mutsig2_images.part000000000180/TOX2.3_1687_20000_0.20685_0.12475_0.2055.png
                gene_name: TOX2
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 51 percent done.
TP63
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.224355e-02	ci left: 4.527897e-01	ci right 4.724321e-01	k: 4626	n:10000
Cons ci ratio: 1.381978e-02	ci left: 8.831915e-01	ci right 8.955806e-01	k: 8895	n:10000
KS ci ratio: 7.422056e-02	ci left: 2.099406e-01	ci right 2.262240e-01	k: 2180	n:10000
TP63   10000 perm   2 sec   (5756 perm/sec)   p_kst 2.180000e-01   p_cons 8.895000e-01   p_joint 4.626000e-01

Outputting figure to mutsig2_images.part000000000180/TP63.3_2264_10000_0.218_0.8895_0.4626.png
                gene_name: TP63
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 53 percent done.
TPCN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.541838e-01	ci left: 9.958933e-03	ci right 1.433217e-02	k: 120	n:10000
Cons ci ratio: 2.549086e-01	ci left: 2.015152e-02	ci right 2.613074e-02	k: 230	n:10000
KS ci ratio: 1.687404e-01	ci left: 4.686539e-02	ci right 5.559839e-02	k: 511	n:10000
TPCN1   10000 perm   2 sec   (5516 perm/sec)   p_kst 5.110000e-02   p_cons 2.300000e-02   p_joint 1.200000e-02

Joint ci ratio: 2.007894e-01	ci left: 1.682030e-02	ci right 2.062146e-02	k: 373	n:20000
Cons ci ratio: 1.749006e-01	ci left: 2.235394e-02	ci right 2.668581e-02	k: 489	n:20000
KS ci ratio: 1.174580e-01	ci left: 4.964363e-02	ci right 5.588721e-02	k: 1054	n:20000
TPCN1   20000 perm   4 sec   (4890 perm/sec)   p_kst 5.270000e-02   p_cons 2.445000e-02   p_joint 1.865000e-02

Joint ci ratio: 9.833955e-02	ci left: 4.782119e-02	ci right 5.279969e-02	k: 1508	n:30000
Cons ci ratio: 1.410463e-01	ci left: 2.332713e-02	ci right 2.689898e-02	k: 752	n:30000
KS ci ratio: 9.803211e-02	ci left: 4.811419e-02	ci right 5.310663e-02	k: 1517	n:30000
TPCN1   30000 perm   6 sec   (4647 perm/sec)   p_kst 5.056667e-02   p_cons 2.506667e-02   p_joint 5.026667e-02

Joint ci ratio: 9.066124e-02	ci left: 4.262216e-02	ci right 4.669427e-02	k: 1785	n:40000
Cons ci ratio: 1.087235e-01	ci left: 2.976121e-02	ci right 3.320724e-02	k: 1258	n:40000
KS ci ratio: 8.606954e-02	ci left: 4.717419e-02	ci right 5.144154e-02	k: 1971	n:40000
TPCN1   40000 perm   9 sec   (4485 perm/sec)   p_kst 4.927500e-02   p_cons 3.145000e-02   p_joint 4.462500e-02

Joint ci ratio: 8.637818e-02	ci left: 3.784865e-02	ci right 4.128507e-02	k: 1977	n:50000
Cons ci ratio: 9.768700e-02	ci left: 2.967384e-02	ci right 3.274091e-02	k: 1559	n:50000
KS ci ratio: 7.672156e-02	ci left: 4.771311e-02	ci right 5.153939e-02	k: 2480	n:50000
TPCN1   50000 perm   11 sec   (4372 perm/sec)   p_kst 4.960000e-02   p_cons 3.118000e-02   p_joint 3.954000e-02

Outputting figure to mutsig2_images.part000000000180/TPCN1.3_2779_50000_0.0496_0.03118_0.03954.png
                gene_name: TPCN1
               theta_stop: 0.098 
                    nperm: 50000 
                     p_ks: 0.050 
        ci_ks_bounds_left: 0.048 
       ci_ks_bounds_right: 0.052 
                   p_cons: 0.031 
      ci_cons_bounds_left: 0.030 
     ci_cons_bounds_right: 0.033 
                  p_joint: 0.040 
     ci_joint_bounds_left: 0.038 
    ci_joint_bounds_right: 0.041 

Current progress: 56 percent done.
TPI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.955534e-02	ci left: 3.752485e-01	ci right 3.944186e-01	k: 3848	n:10000
Cons ci ratio: 4.938832e-02	ci left: 3.768407e-01	ci right 3.960255e-01	k: 3864	n:10000
KS ci ratio: 5.545381e-02	ci left: 3.238620e-01	ci right 3.424353e-01	k: 3331	n:10000
TPI1   10000 perm   2 sec   (6249 perm/sec)   p_kst 3.331000e-01   p_cons 3.864000e-01   p_joint 3.848000e-01

Outputting figure to mutsig2_images.part000000000180/TPI1.3_889_10000_0.3331_0.3864_0.3848.png
                gene_name: TPI1
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.39 

Current progress: 58 percent done.
TPP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.154273e-01	ci left: 9.740099e-02	ci right 1.094311e-01	k: 1033	n:10000
Cons ci ratio: 1.032853e-01	ci left: 1.193599e-01	ci right 1.324588e-01	k: 1258	n:10000
KS ci ratio: 1.092784e-01	ci left: 1.077365e-01	ci right 1.202894e-01	k: 1139	n:10000
TPP2   10000 perm   2 sec   (4973 perm/sec)   p_kst 1.139000e-01   p_cons 1.258000e-01   p_joint 1.033000e-01

Joint ci ratio: 6.046574e-02	ci left: 1.683734e-01	ci right 1.789217e-01	k: 3472	n:20000
Cons ci ratio: 6.464422e-02	ci left: 1.502564e-01	ci right 1.603440e-01	k: 3105	n:20000
KS ci ratio: 7.796938e-02	ci left: 1.078084e-01	ci right 1.166047e-01	k: 2243	n:20000
TPP2   20000 perm   5 sec   (4429 perm/sec)   p_kst 1.121500e-01   p_cons 1.552500e-01   p_joint 1.736000e-01

Outputting figure to mutsig2_images.part000000000180/TPP2.3_3866_20000_0.11215_0.15525_0.1736.png
                gene_name: TPP2
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 60 percent done.
TRAF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.213733e-01	ci left: 2.702777e-02	ci right 3.384941e-02	k: 303	n:10000
Cons ci ratio: 1.028651e-01	ci left: 1.202398e-01	ci right 1.333784e-01	k: 1267	n:10000
KS ci ratio: 9.922299e-02	ci left: 1.282615e-01	ci right 1.417519e-01	k: 1349	n:10000
TRAF3   10000 perm   2 sec   (5737 perm/sec)   p_kst 1.349000e-01   p_cons 1.267000e-01   p_joint 3.030000e-02

Joint ci ratio: 9.947345e-02	ci left: 6.845501e-02	ci right 7.567000e-02	k: 1440	n:20000
Cons ci ratio: 7.104720e-02	ci left: 1.273868e-01	ci right 1.368204e-01	k: 2641	n:20000
KS ci ratio: 6.999770e-02	ci left: 1.307849e-01	ci right 1.403213e-01	k: 2710	n:20000
TRAF3   20000 perm   4 sec   (5131 perm/sec)   p_kst 1.355000e-01   p_cons 1.320500e-01   p_joint 7.200000e-02

Outputting figure to mutsig2_images.part000000000180/TRAF3.3_1747_20000_0.1355_0.13205_0.072.png
                gene_name: TRAF3
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.072 
     ci_joint_bounds_left: 0.068 
    ci_joint_bounds_right: 0.076 

Current progress: 63 percent done.
TRAF3IP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.108949e-02	ci left: 4.665692e-01	ci right 4.862446e-01	k: 4764	n:10000
Cons ci ratio: 3.592106e-02	ci left: 5.336759e-01	ci right 5.532988e-01	k: 5435	n:10000
KS ci ratio: 4.638942e-02	ci left: 4.068133e-01	ci right 4.262354e-01	k: 4165	n:10000
TRAF3IP1   10000 perm   2 sec   (5538 perm/sec)   p_kst 4.165000e-01   p_cons 5.435000e-01   p_joint 4.764000e-01

Outputting figure to mutsig2_images.part000000000180/TRAF3IP1.3_2144_10000_0.4165_0.5435_0.4764.png
                gene_name: TRAF3IP1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 65 percent done.
TOM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.671421e-03	ci left: 9.893898e-01	ci right 9.931155e-01	k: 9914	n:10000
Cons ci ratio: 9.215805e-02	ci left: 1.460943e-01	ci right 1.603084e-01	k: 1531	n:10000
KS ci ratio: 9.215698e-03	ci left: 9.431544e-01	ci right 9.519826e-01	k: 9477	n:10000
TOM1   10000 perm   1 sec   (6672 perm/sec)   p_kst 9.477000e-01   p_cons 1.531000e-01   p_joint 9.914000e-01

Outputting figure to mutsig2_images.part000000000180/TOM1.2_1542_10000_0.9477_0.1531_0.9914.png
                gene_name: TOM1
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 67 percent done.
TOP1MT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.627496e-02	ci left: 3.174100e-01	ci right 3.358911e-01	k: 3266	n:10000
Cons ci ratio: 1.166260e-01	ci left: 9.555040e-02	ci right 1.074829e-01	k: 1014	n:10000
KS ci ratio: 2.883840e-02	ci left: 6.393519e-01	ci right 6.581613e-01	k: 6488	n:10000
TOP1MT   10000 perm   2 sec   (6373 perm/sec)   p_kst 6.488000e-01   p_cons 1.014000e-01   p_joint 3.266000e-01

Joint ci ratio: 5.316103e-02	ci left: 2.080359e-01	ci right 2.194475e-01	k: 4274	n:20000
Cons ci ratio: 8.320037e-02	ci left: 9.572844e-02	ci right 1.040883e-01	k: 1997	n:20000
KS ci ratio: 2.039045e-02	ci left: 6.421884e-01	ci right 6.554683e-01	k: 12977	n:20000
TOP1MT   20000 perm   4 sec   (5613 perm/sec)   p_kst 6.488500e-01   p_cons 9.985000e-02   p_joint 2.137000e-01

Outputting figure to mutsig2_images.part000000000180/TOP1MT.2_1862_20000_0.64885_0.09985_0.2137.png
                gene_name: TOP1MT
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.100 
      ci_cons_bounds_left: 0.096 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 70 percent done.
TOP2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.354587e-02	ci left: 5.674464e-01	ci right 5.869086e-01	k: 5772	n:10000
KS ci ratio: 1.155646e-02	ci left: 9.146125e-01	ci right 9.253413e-01	k: 9201	n:10000
TOP2A   10000 perm   2 sec   (4664 perm/sec)   p_kst 9.201000e-01   p_cons 5.772000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000180/TOP2A.2_4736_10000_0.9201_0.5772_1.png
                gene_name: TOP2A
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
TOR1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.506595e-02	ci left: 2.575566e-01	ci right 2.749797e-01	k: 2662	n:10000
Cons ci ratio: 8.723287e-02	ci left: 1.606216e-01	ci right 1.753724e-01	k: 1679	n:10000
KS ci ratio: 6.465934e-03	ci left: 9.702664e-01	ci right 9.766537e-01	k: 9736	n:10000
TOR1B   10000 perm   1 sec   (6811 perm/sec)   p_kst 9.736000e-01   p_cons 1.679000e-01   p_joint 2.662000e-01

Outputting figure to mutsig2_images.part000000000180/TOR1B.2_1031_10000_0.9736_0.1679_0.2662.png
                gene_name: TOR1B
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 74 percent done.
TOX4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.076659e-03	ci left: 9.960741e-01	ci right 9.982200e-01	k: 9973	n:10000
Cons ci ratio: 2.385736e-02	ci left: 7.208794e-01	ci right 7.383866e-01	k: 7297	n:10000
KS ci ratio: 2.732256e-02	ci left: 6.637061e-01	ci right 6.821931e-01	k: 6730	n:10000
TOX4   10000 perm   2 sec   (6440 perm/sec)   p_kst 6.730000e-01   p_cons 7.297000e-01   p_joint 9.973000e-01

Outputting figure to mutsig2_images.part000000000180/TOX4.2_1902_10000_0.673_0.7297_0.9973.png
                gene_name: TOX4
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1.00 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1.00 

Current progress: 77 percent done.
TPBG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.258621e-02	ci left: 9.007276e-01	ci right 9.122343e-01	k: 9066	n:10000
KS ci ratio: 4.465815e-02	ci left: 4.253532e-01	ci right 4.448846e-01	k: 4351	n:10000
TPBG   10000 perm   2 sec   (6553 perm/sec)   p_kst 4.351000e-01   p_cons 9.066000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000180/TPBG.2_1267_10000_0.4351_0.9066_1.png
                gene_name: TPBG
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
TPD52L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.730052e-02	ci left: 8.296127e-01	ci right 8.441905e-01	k: 8370	n:10000
Cons ci ratio: 5.434929e-02	ci left: 3.327988e-01	ci right 3.514933e-01	k: 3421	n:10000
KS ci ratio: 2.658696e-02	ci left: 6.756920e-01	ci right 6.940002e-01	k: 6849	n:10000
TPD52L2   10000 perm   1 sec   (7023 perm/sec)   p_kst 6.849000e-01   p_cons 3.421000e-01   p_joint 8.370000e-01

Outputting figure to mutsig2_images.part000000000180/TPD52L2.2_726_10000_0.6849_0.3421_0.837.png
                gene_name: TPD52L2
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 81 percent done.
TPD52L3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.251794e-02	ci left: 2.732942e-01	ci right 2.910328e-01	k: 2821	n:10000
Cons ci ratio: 3.005765e-02	ci left: 6.201489e-01	ci right 6.391755e-01	k: 6297	n:10000
KS ci ratio: 1.341162e-01	ci left: 7.339876e-02	ci right 8.404819e-02	k: 786	n:10000
TPD52L3   10000 perm   1 sec   (7186 perm/sec)   p_kst 7.860000e-02   p_cons 6.297000e-01   p_joint 2.821000e-01

Joint ci ratio: 3.834976e-02	ci left: 3.365187e-01	ci right 3.497269e-01	k: 6862	n:20000
Cons ci ratio: 2.119122e-02	ci left: 6.243692e-01	ci right 6.377926e-01	k: 12622	n:20000
KS ci ratio: 9.716747e-02	ci left: 7.158212e-02	ci right 7.894193e-02	k: 1504	n:20000
TPD52L3   20000 perm   3 sec   (6215 perm/sec)   p_kst 7.520000e-02   p_cons 6.311000e-01   p_joint 3.431000e-01

Outputting figure to mutsig2_images.part000000000180/TPD52L3.2_511_20000_0.0752_0.6311_0.3431.png
                gene_name: TPD52L3
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.075 
        ci_ks_bounds_left: 0.072 
       ci_ks_bounds_right: 0.079 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 84 percent done.
TPH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.798050e-02	ci left: 8.186283e-01	ci right 8.335812e-01	k: 8262	n:10000
KS ci ratio: 3.571168e-02	ci left: 5.365801e-01	ci right 5.561928e-01	k: 5464	n:10000
TPH1   10000 perm   2 sec   (6386 perm/sec)   p_kst 5.464000e-01   p_cons 8.262000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000180/TPH1.2_1375_10000_0.5464_0.8262_1.png
                gene_name: TPH1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
TPRA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.142107e-01	ci left: 2.892165e-02	ci right 3.595419e-02	k: 323	n:10000
Cons ci ratio: 2.037220e-01	ci left: 3.205417e-02	ci right 3.941949e-02	k: 356	n:10000
KS ci ratio: 8.290783e-02	ci left: 1.750712e-01	ci right 1.903141e-01	k: 1826	n:10000
TPRA1   10000 perm   1 sec   (7055 perm/sec)   p_kst 1.826000e-01   p_cons 3.560000e-02   p_joint 3.230000e-02

Joint ci ratio: 1.743543e-01	ci left: 2.249752e-02	ci right 2.684217e-02	k: 492	n:20000
Cons ci ratio: 1.427146e-01	ci left: 3.375046e-02	ci right 3.898544e-02	k: 726	n:20000
KS ci ratio: 5.859607e-02	ci left: 1.774648e-01	ci right 1.882275e-01	k: 3656	n:20000
TPRA1   20000 perm   3 sec   (6072 perm/sec)   p_kst 1.828000e-01   p_cons 3.630000e-02   p_joint 2.460000e-02

Joint ci ratio: 1.480533e-01	ci left: 2.114060e-02	ci right 2.455267e-02	k: 684	n:30000
Cons ci ratio: 1.182538e-01	ci left: 3.324024e-02	ci right 3.745037e-02	k: 1059	n:30000
KS ci ratio: 4.808794e-02	ci left: 1.769547e-01	ci right 1.857071e-01	k: 5439	n:30000
TPRA1   30000 perm   5 sec   (5718 perm/sec)   p_kst 1.813000e-01   p_cons 3.530000e-02   p_joint 2.280000e-02

Joint ci ratio: 1.391637e-01	ci left: 1.809497e-02	ci right 2.082543e-02	k: 777	n:40000
Cons ci ratio: 1.025743e-01	ci left: 3.341535e-02	ci right 3.705253e-02	k: 1408	n:40000
KS ci ratio: 4.159062e-02	ci left: 1.779319e-01	ci right 1.855143e-01	k: 7268	n:40000
TPRA1   40000 perm   7 sec   (5471 perm/sec)   p_kst 1.817000e-01   p_cons 3.520000e-02   p_joint 1.942500e-02

Joint ci ratio: 1.143582e-01	ci left: 2.164549e-02	ci right 2.429029e-02	k: 1147	n:50000
Cons ci ratio: 9.126982e-02	ci left: 3.395377e-02	ci right 3.722043e-02	k: 1778	n:50000
KS ci ratio: 3.713803e-02	ci left: 1.788251e-01	ci right 1.856119e-01	k: 9110	n:50000
TPRA1   50000 perm   9 sec   (5287 perm/sec)   p_kst 1.822000e-01   p_cons 3.556000e-02   p_joint 2.294000e-02

Joint ci ratio: 1.057216e-01	ci left: 2.121451e-02	ci right 2.359867e-02	k: 1343	n:60000
Cons ci ratio: 8.323283e-02	ci left: 3.416422e-02	ci right 3.714758e-02	k: 2138	n:60000
KS ci ratio: 3.391781e-02	ci left: 1.789860e-01	ci right 1.851781e-01	k: 10924	n:60000
TPRA1   60000 perm   12 sec   (5140 perm/sec)   p_kst 1.820667e-01   p_cons 3.563333e-02   p_joint 2.238333e-02

Joint ci ratio: 1.006384e-01	ci left: 2.014562e-02	ci right 2.229433e-02	k: 1484	n:70000
Cons ci ratio: 7.727572e-02	ci left: 3.408529e-02	ci right 3.683910e-02	k: 2481	n:70000
KS ci ratio: 3.146648e-02	ci left: 1.786082e-01	ci right 1.843325e-01	k: 12702	n:70000
TPRA1   70000 perm   14 sec   (5001 perm/sec)   p_kst 1.814571e-01   p_cons 3.544286e-02   p_joint 2.120000e-02

Joint ci ratio: 1.070825e-01	ci left: 1.559207e-02	ci right 1.736825e-02	k: 1317	n:80000
Cons ci ratio: 7.281308e-02	ci left: 3.368801e-02	ci right 3.624586e-02	k: 2796	n:80000
KS ci ratio: 2.940293e-02	ci left: 1.791079e-01	ci right 1.844652e-01	k: 14542	n:80000
TPRA1   80000 perm   16 sec   (4877 perm/sec)   p_kst 1.817750e-01   p_cons 3.495000e-02   p_joint 1.646250e-02

Joint ci ratio: 1.209668e-01	ci left: 1.083521e-02	ci right 1.224098e-02	k: 1037	n:90000
Cons ci ratio: 6.882615e-02	ci left: 3.359024e-02	ci right 3.599542e-02	k: 3130	n:90000
KS ci ratio: 2.775233e-02	ci left: 1.789314e-01	ci right 1.839781e-01	k: 16330	n:90000
TPRA1   90000 perm   19 sec   (4764 perm/sec)   p_kst 1.814444e-01   p_cons 3.477778e-02   p_joint 1.152222e-02

Joint ci ratio: 9.644943e-02	ci left: 1.546565e-02	ci right 1.704259e-02	k: 1624	n:100000
Cons ci ratio: 6.551788e-02	ci left: 3.342654e-02	ci right 3.570056e-02	k: 3455	n:100000
KS ci ratio: 2.630565e-02	ci left: 1.793143e-01	ci right 1.841041e-01	k: 18170	n:100000
TPRA1   100000 perm   21 sec   (4661 perm/sec)   p_kst 1.817000e-01   p_cons 3.455000e-02   p_joint 1.624000e-02

Outputting figure to mutsig2_images.part000000000180/TPRA1.2_1162_100000_0.1817_0.03455_0.01624.png
                gene_name: TPRA1
               theta_stop: 0.096 
                    nperm: 100000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.035 
      ci_cons_bounds_left: 0.033 
     ci_cons_bounds_right: 0.036 
                  p_joint: 0.016 
     ci_joint_bounds_left: 0.015 
    ci_joint_bounds_right: 0.017 

Current progress: 88 percent done.
TPRG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.215104e-03	ci left: 9.799492e-01	ci right 9.851642e-01	k: 9827	n:10000
Cons ci ratio: 2.538644e-02	ci left: 6.954487e-01	ci right 7.134321e-01	k: 7045	n:10000
KS ci ratio: 2.832774e-02	ci left: 6.475005e-01	ci right 6.662080e-01	k: 6569	n:10000
TPRG1   10000 perm   1 sec   (6873 perm/sec)   p_kst 6.569000e-01   p_cons 7.045000e-01   p_joint 9.827000e-01

Outputting figure to mutsig2_images.part000000000180/TPRG1.2_848_10000_0.6569_0.7045_0.9827.png
                gene_name: TPRG1
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 91 percent done.
TPRX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.738085e-01	ci left: 4.417993e-02	ci right 5.268561e-02	k: 483	n:10000
Cons ci ratio: 2.362105e-01	ci left: 2.362888e-02	ci right 3.005075e-02	k: 267	n:10000
KS ci ratio: 6.997954e-03	ci left: 9.656240e-01	ci right 9.724991e-01	k: 9692	n:10000
TPRX1   10000 perm   2 sec   (6452 perm/sec)   p_kst 9.692000e-01   p_cons 2.670000e-02   p_joint 4.830000e-02

Joint ci ratio: 1.243967e-01	ci left: 4.435048e-02	ci right 5.028202e-02	k: 945	n:20000
Cons ci ratio: 1.645238e-01	ci left: 2.532545e-02	ci right 2.991327e-02	k: 551	n:20000
KS ci ratio: 4.781158e-03	ci left: 9.687356e-01	ci right 9.734261e-01	k: 19423	n:20000
TPRX1   20000 perm   4 sec   (5712 perm/sec)   p_kst 9.711500e-01   p_cons 2.755000e-02   p_joint 4.725000e-02

Joint ci ratio: 9.755917e-02	ci left: 4.857001e-02	ci right 5.358405e-02	k: 1531	n:30000
Cons ci ratio: 1.340017e-01	ci left: 2.587211e-02	ci right 2.962009e-02	k: 831	n:30000
KS ci ratio: 3.878387e-03	ci left: 9.695541e-01	ci right 9.733538e-01	k: 29145	n:30000
TPRX1   30000 perm   6 sec   (5395 perm/sec)   p_kst 9.715000e-01   p_cons 2.770000e-02   p_joint 5.103333e-02

Joint ci ratio: 8.534367e-02	ci left: 4.795789e-02	ci right 5.225773e-02	k: 2003	n:40000
Cons ci ratio: 1.168279e-01	ci left: 2.577352e-02	ci right 2.899558e-02	k: 1094	n:40000
KS ci ratio: 3.384014e-03	ci left: 9.693855e-01	ci right 9.726956e-01	k: 38843	n:40000
TPRX1   40000 perm   8 sec   (5212 perm/sec)   p_kst 9.710750e-01   p_cons 2.735000e-02   p_joint 5.007500e-02

Joint ci ratio: 7.432513e-02	ci left: 5.073792e-02	ci right 5.467422e-02	k: 2634	n:50000
Cons ci ratio: 1.034786e-01	ci left: 2.645445e-02	ci right 2.936071e-02	k: 1394	n:50000
KS ci ratio: 3.026254e-03	ci left: 9.695735e-01	ci right 9.725315e-01	k: 48554	n:50000
TPRX1   50000 perm   10 sec   (5043 perm/sec)   p_kst 9.710800e-01   p_cons 2.788000e-02   p_joint 5.268000e-02

Joint ci ratio: 6.997765e-02	ci left: 4.795817e-02	ci right 5.145222e-02	k: 2981	n:60000
Cons ci ratio: 1.089582e-01	ci left: 1.996491e-02	ci right 2.228173e-02	k: 1266	n:60000
KS ci ratio: 2.777802e-03	ci left: 9.693874e-01	ci right 9.721001e-01	k: 58246	n:60000
TPRX1   60000 perm   12 sec   (4909 perm/sec)   p_kst 9.707667e-01   p_cons 2.110000e-02   p_joint 4.968333e-02

Joint ci ratio: 6.489482e-02	ci left: 4.793283e-02	ci right 5.116178e-02	k: 3467	n:70000
Cons ci ratio: 1.006038e-01	ci left: 2.015955e-02	ci right 2.230896e-02	k: 1485	n:70000
KS ci ratio: 2.551962e-03	ci left: 9.699342e-01	ci right 9.724265e-01	k: 67984	n:70000
TPRX1   70000 perm   15 sec   (4792 perm/sec)   p_kst 9.712000e-01   p_cons 2.121429e-02   p_joint 4.952857e-02

Joint ci ratio: 7.132038e-02	ci left: 3.508823e-02	ci right 3.769553e-02	k: 2910	n:80000
Cons ci ratio: 9.445597e-02	ci left: 2.007862e-02	ci right 2.208132e-02	k: 1685	n:80000
KS ci ratio: 2.380136e-03	ci left: 9.701833e-01	ci right 9.725074e-01	k: 77709	n:80000
TPRX1   80000 perm   17 sec   (4685 perm/sec)   p_kst 9.713625e-01   p_cons 2.106250e-02   p_joint 3.637500e-02

Outputting figure to mutsig2_images.part000000000180/TPRX1.2_1244_80000_0.97136_0.021063_0.036375.png
                gene_name: TPRX1
               theta_stop: 0.094 
                    nperm: 80000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.021 
      ci_cons_bounds_left: 0.020 
     ci_cons_bounds_right: 0.022 
                  p_joint: 0.036 
     ci_joint_bounds_left: 0.035 
    ci_joint_bounds_right: 0.038 

Current progress: 93 percent done.
TPST1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.968333e-03	ci left: 9.563913e-01	ci right 9.641376e-01	k: 9604	n:10000
Cons ci ratio: 3.889743e-02	ci left: 4.939506e-01	ci right 5.136472e-01	k: 5038	n:10000
KS ci ratio: 2.795794e-02	ci left: 6.534378e-01	ci right 6.720673e-01	k: 6628	n:10000
TPST1   10000 perm   1 sec   (6712 perm/sec)   p_kst 6.628000e-01   p_cons 5.038000e-01   p_joint 9.604000e-01

Outputting figure to mutsig2_images.part000000000180/TPST1.2_1129_10000_0.6628_0.5038_0.9604.png
                gene_name: TPST1
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.96 

Current progress: 95 percent done.
TRA2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.147262e-02	ci left: 7.608141e-01	ci right 7.774289e-01	k: 7692	n:10000
KS ci ratio: 2.749650e-02	ci left: 6.608869e-01	ci right 6.794139e-01	k: 6702	n:10000
TRA2A   10000 perm   1 sec   (6868 perm/sec)   p_kst 6.702000e-01   p_cons 7.692000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000180/TRA2A.2_881_10000_0.6702_0.7692_1.png
                gene_name: TRA2A
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
TRA2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.638534e-02	ci left: 8.441744e-01	ci right 8.582204e-01	k: 8513	n:10000
Cons ci ratio: 1.078481e-02	ci left: 9.245130e-01	ci right 9.346350e-01	k: 9297	n:10000
KS ci ratio: 4.273097e-02	ci left: 4.471004e-01	ci right 4.667247e-01	k: 4569	n:10000
TRA2B   10000 perm   1 sec   (7115 perm/sec)   p_kst 4.569000e-01   p_cons 9.297000e-01   p_joint 8.513000e-01

Outputting figure to mutsig2_images.part000000000180/TRA2B.2_903_10000_0.4569_0.9297_0.8513.png
                gene_name: TRA2B
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000180
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 180 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1528>
Subject: Job 8004653: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1528>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000181> was used as the working directory.
Started at Sun Nov 11 15:22:57 2012
Results reported at Sun Nov 11 15:31:01 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000181.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000181.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 181  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000181.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    602.95 sec.
    Max Memory :      4702 MB
    Max Swap   :      7129 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
181
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 181
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 181: processing genes 16286 - 16375
Calculating significance of each gene.
Using projection method.
16286	TRAF3IP2	1
16287	TRAF3IP3	1
16288	TRAF4	8.754805e-01
16289	TRAF5	5.180093e-01
16290	TRAF6	5.835050e-02
16291	TRAF7	8.790691e-01
16292	TRAFD1	1
16293	TRAIP	6.371212e-01
16294	TRAK1	9.733060e-01
16295	TRAK2	3.396458e-01
16296	TRAM1	2.134726e-01
16297	TRAM1L1	3.034532e-01
16298	TRAM2	6.344667e-01
16299	TRANK1	9.994620e-01
16300	TRAP1	1
16301	TRAPPC1	1
16302	TRAPPC10	8.953129e-01
16303	TRAPPC2	1
16304	TRAPPC2L	1
16305	TRAPPC3	1
16306	TRAPPC4	6.254182e-01
16307	TRAPPC5	2.385937e-01
16308	TRAPPC6A	2.468295e-01
16309	TRAPPC6B	1
16310	TRAPPC9	5.550090e-01
16311	TRAT1	7.772486e-06
16312	TRDMT1	1
16313	TRDN	1.936752e-01
16314	TREH	6.512707e-01
16315	TREM1	1.617401e-01
16316	TREM2	6.552968e-01
16317	TREML1	1
16318	TREML2	3.881153e-01
16319	TREML4	5.540992e-01
16320	TRERF1	8.923411e-01
16321	TREX1	5.778279e-01
16322	TREX2	1
16323	TRH	1
16324	TRHDE	3.437874e-05
16325	TRHR	5.567847e-01
16326	TRIAP1	1
16327	TRIB1	1
16328	TRIB2	1
16329	TRIB3	1.121250e-01
16330	TRIL	5.600858e-01
16331	TRIM10	4.436580e-01
16332	TRIM11	2.379624e-01
16333	TRIM13	1
16334	TRIM14	4.710429e-01
16335	TRIM15	2.255729e-01
16336	TRIM16	5.757198e-01
16337	TRIM16L	1
16338	TRIM17	9.103247e-01
16339	TRIM2	7.180822e-01
16340	TRIM21	3.467062e-01
16341	TRIM22	2.273534e-01
16342	TRIM23	3.798634e-01
16343	TRIM24	1
16344	TRIM25	4.874912e-01
16345	TRIM26	6.366163e-01
16346	TRIM27	1
16347	TRIM28	1
16348	TRIM29	9.520460e-01
16349	TRIM3	7.830865e-01
16350	TRIM31	1
16351	TRIM32	3.425934e-01
16352	TRIM33	1
16353	TRIM34	1
16354	TRIM35	1
16355	TRIM36	6.887109e-01
16356	TRIM37	2.931640e-01
16357	TRIM38	7.572332e-01
16358	TRIM39	4.041495e-01
16359	TRIM4	3.681992e-01
16360	TRIM40	6.725604e-01
16361	TRIM41	8.977865e-01
16362	TRIM42	5.134764e-01
16363	TRIM43	1.681553e-01
16364	TRIM44	7.519693e-01
16365	TRIM45	2.416811e-01
16366	TRIM46	3.476367e-01
16367	TRIM47	3.311131e-01
16368	TRIM48	8.057078e-04
16369	TRIM49	1.412698e-01
16370	TRIM5	7.407671e-01
16371	TRIM50	1.123074e-01
16372	TRIM52	1
16373	TRIM54	1
16374	TRIM55	9.030923e-01
16375	TRIM56	4.708974e-01
Done

Running MutSig 2:
Scatter job 181: processing genes 16286 - 16375
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
TRHDE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.047174e-01	ci left: 1.164278e-01	ci right 1.293928e-01	k: 1228	n:10000
Cons ci ratio: 9.600000e-02	ci left: 1.359974e-01	ci right 1.498113e-01	k: 1428	n:10000
KS ci ratio: 9.066030e-02	ci left: 1.503128e-01	ci right 1.646873e-01	k: 1574	n:10000
TRHDE   10000 perm   2 sec   (4066 perm/sec)   p_kst 1.574000e-01   p_cons 1.428000e-01   p_joint 1.228000e-01

Joint ci ratio: 6.796664e-02	ci left: 1.377319e-01	ci right 1.474723e-01	k: 2851	n:20000
Cons ci ratio: 7.017748e-02	ci left: 1.301938e-01	ci right 1.397126e-01	k: 2698	n:20000
KS ci ratio: 6.377143e-02	ci left: 1.538089e-01	ci right 1.639905e-01	k: 3177	n:20000
TRHDE   20000 perm   8 sec   (2447 perm/sec)   p_kst 1.588500e-01   p_cons 1.349000e-01   p_joint 1.425500e-01

Outputting figure to mutsig2_images.part000000000181/TRHDE.15_3151_20000_0.15885_0.1349_0.14255.png
                gene_name: TRHDE
               theta_stop: 0.070 
                    nperm: 20000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 2 percent done.
TRDN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.149343e-02	ci left: 3.573442e-01	ci right 3.763334e-01	k: 3668	n:10000
Cons ci ratio: 1.224140e-01	ci left: 8.727953e-02	ci right 9.875882e-02	k: 929	n:10000
KS ci ratio: 3.094038e-02	ci left: 6.064853e-01	ci right 6.256470e-01	k: 6161	n:10000
TRDN   10000 perm   3 sec   (3868 perm/sec)   p_kst 6.161000e-01   p_cons 9.290000e-02   p_joint 3.668000e-01

Joint ci ratio: 3.721222e-02	ci left: 3.501570e-01	ci right 3.634847e-01	k: 7136	n:20000
Cons ci ratio: 8.628047e-02	ci left: 8.949949e-02	ci right 9.761912e-02	k: 1870	n:20000
KS ci ratio: 2.192785e-02	ci left: 6.082651e-01	ci right 6.218014e-01	k: 12301	n:20000
TRDN   20000 perm   5 sec   (3676 perm/sec)   p_kst 6.150500e-01   p_cons 9.350000e-02   p_joint 3.568000e-01

Outputting figure to mutsig2_images.part000000000181/TRDN.10_2354_20000_0.61505_0.0935_0.3568.png
                gene_name: TRDN
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.093 
      ci_cons_bounds_left: 0.089 
     ci_cons_bounds_right: 0.098 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 4 percent done.
TRANK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.683359e-02	ci left: 6.716624e-01	ci right 6.900322e-01	k: 6809	n:10000
Cons ci ratio: 6.282798e-02	ci left: 2.713139e-01	ci right 2.890143e-01	k: 2801	n:10000
KS ci ratio: 2.669171e-02	ci left: 6.739793e-01	ci right 6.923139e-01	k: 6832	n:10000
TRANK1   10000 perm   3 sec   (2872 perm/sec)   p_kst 6.832000e-01   p_cons 2.801000e-01   p_joint 6.809000e-01

Outputting figure to mutsig2_images.part000000000181/TRANK1.8_8870_10000_0.6832_0.2801_0.6809.png
                gene_name: TRANK1
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 6 percent done.
TRIM42
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.280068e-02	ci left: 7.385604e-01	ci right 7.556954e-01	k: 7472	n:10000
Cons ci ratio: 5.461592e-02	ci left: 3.306139e-01	ci right 3.492795e-01	k: 3399	n:10000
KS ci ratio: 2.320499e-02	ci left: 7.317890e-01	ci right 7.490707e-01	k: 7405	n:10000
TRIM42   10000 perm   2 sec   (5393 perm/sec)   p_kst 7.405000e-01   p_cons 3.399000e-01   p_joint 7.472000e-01

Outputting figure to mutsig2_images.part000000000181/TRIM42.8_2192_10000_0.7405_0.3399_0.7472.png
                gene_name: TRIM42
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 9 percent done.
TRAT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.554632e-02	ci left: 5.388838e-01	ci right 5.584878e-01	k: 5487	n:10000
Cons ci ratio: 6.762478e-02	ci left: 2.429207e-01	ci right 2.600243e-01	k: 2514	n:10000
KS ci ratio: 1.695711e-02	ci left: 8.351090e-01	ci right 8.494910e-01	k: 8424	n:10000
TRAT1   10000 perm   2 sec   (5538 perm/sec)   p_kst 8.424000e-01   p_cons 2.514000e-01   p_joint 5.487000e-01

Outputting figure to mutsig2_images.part000000000181/TRAT1.7_585_10000_0.8424_0.2514_0.5487.png
                gene_name: TRAT1
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 11 percent done.
TRIM37
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.925724e-02	ci left: 7.977051e-01	ci right 8.133165e-01	k: 8056	n:10000
KS ci ratio: 1.299784e-02	ci left: 8.949790e-01	ci right 9.067863e-01	k: 9010	n:10000
TRIM37   10000 perm   2 sec   (5033 perm/sec)   p_kst 9.010000e-01   p_cons 8.056000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000181/TRIM37.6_2999_10000_0.901_0.8056_1.png
                gene_name: TRIM37
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 13 percent done.
TRAF6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.446737e-02	ci left: 1.696626e-01	ci right 1.847259e-01	k: 1771	n:10000
Cons ci ratio: 1.438733e-01	ci left: 6.410846e-02	ci right 7.414431e-02	k: 690	n:10000
KS ci ratio: 4.264498e-02	ci left: 4.480984e-01	ci right 4.677261e-01	k: 4579	n:10000
TRAF6   10000 perm   2 sec   (6015 perm/sec)   p_kst 4.579000e-01   p_cons 6.900000e-02   p_joint 1.771000e-01

Joint ci ratio: 5.675206e-02	ci left: 1.871053e-01	ci right 1.980842e-01	k: 3851	n:20000
Cons ci ratio: 1.017755e-01	ci left: 6.552521e-02	ci right 7.260070e-02	k: 1380	n:20000
KS ci ratio: 3.044414e-02	ci left: 4.462831e-01	ci right 4.601305e-01	k: 9064	n:20000
TRAF6   20000 perm   4 sec   (5312 perm/sec)   p_kst 4.532000e-01   p_cons 6.900000e-02   p_joint 1.925500e-01

Joint ci ratio: 5.131630e-02	ci left: 1.586385e-01	ci right 1.670269e-01	k: 4884	n:30000
Cons ci ratio: 8.300312e-02	ci left: 6.632057e-02	ci right 7.209653e-02	k: 2075	n:30000
KS ci ratio: 2.470168e-02	ci left: 4.506848e-01	ci right 4.619903e-01	k: 13690	n:30000
TRAF6   30000 perm   6 sec   (5058 perm/sec)   p_kst 4.563333e-01   p_cons 6.916667e-02   p_joint 1.628000e-01

Outputting figure to mutsig2_images.part000000000181/TRAF6.5_1593_30000_0.45633_0.069167_0.1628.png
                gene_name: TRAF6
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.069 
      ci_cons_bounds_left: 0.066 
     ci_cons_bounds_right: 0.072 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 15 percent done.
TRAK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.624069e-02	ci left: 5.292700e-01	ci right 5.489072e-01	k: 5391	n:10000
Cons ci ratio: 7.310703e-02	ci left: 2.150704e-01	ci right 2.314911e-01	k: 2232	n:10000
KS ci ratio: 6.270362e-02	ci left: 2.721060e-01	ci right 2.898218e-01	k: 2809	n:10000
TRAK2   10000 perm   2 sec   (5412 perm/sec)   p_kst 2.809000e-01   p_cons 2.232000e-01   p_joint 5.391000e-01

Outputting figure to mutsig2_images.part000000000181/TRAK2.5_2805_10000_0.2809_0.2232_0.5391.png
                gene_name: TRAK2
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 17 percent done.
TRAPPC9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.827759e-02	ci left: 2.393626e-01	ci right 2.563846e-01	k: 2478	n:10000
KS ci ratio: 2.234819e-02	ci left: 7.461435e-01	ci right 7.631079e-01	k: 7547	n:10000
TRAPPC9   10000 perm   2 sec   (4903 perm/sec)   p_kst 7.547000e-01   p_cons 2.478000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000181/TRAPPC9.5_3833_10000_0.7547_0.2478_1.png
                gene_name: TRAPPC9
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 19 percent done.
TRIM45
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.453543e-02	ci left: 7.095727e-01	ci right 7.272999e-01	k: 7185	n:10000
Cons ci ratio: 2.707466e-02	ci left: 6.677342e-01	ci right 6.861626e-01	k: 6770	n:10000
KS ci ratio: 3.613873e-02	ci left: 5.306718e-01	ci right 5.503046e-01	k: 5405	n:10000
TRIM45   10000 perm   2 sec   (5970 perm/sec)   p_kst 5.405000e-01   p_cons 6.770000e-01   p_joint 7.185000e-01

Outputting figure to mutsig2_images.part000000000181/TRIM45.5_1767_10000_0.5405_0.677_0.7185.png
                gene_name: TRIM45
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 21 percent done.
TRIM48
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.972278e-02	ci left: 4.834542e-01	ci right 5.031497e-01	k: 4933	n:10000
Cons ci ratio: 6.123146e-02	ci left: 2.817130e-01	ci right 2.996091e-01	k: 2906	n:10000
KS ci ratio: 5.294291e-02	ci left: 3.446209e-01	ci right 3.634642e-01	k: 3540	n:10000
TRIM48   10000 perm   2 sec   (5952 perm/sec)   p_kst 3.540000e-01   p_cons 2.906000e-01   p_joint 4.933000e-01

Outputting figure to mutsig2_images.part000000000181/TRIM48.5_695_10000_0.354_0.2906_0.4933.png
                gene_name: TRIM48
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 23 percent done.
TRIM55
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.012206e-02	ci left: 4.784575e-01	ci right 4.981493e-01	k: 4883	n:10000
Cons ci ratio: 3.261332e-02	ci left: 5.811882e-01	ci right 6.005589e-01	k: 5909	n:10000
KS ci ratio: 6.939426e-02	ci left: 2.334341e-01	ci right 2.503165e-01	k: 2418	n:10000
TRIM55   10000 perm   2 sec   (5633 perm/sec)   p_kst 2.418000e-01   p_cons 5.909000e-01   p_joint 4.883000e-01

Outputting figure to mutsig2_images.part000000000181/TRIM55.5_1779_10000_0.2418_0.5909_0.4883.png
                gene_name: TRIM55
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 26 percent done.
TRIB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.051743e-02	ci left: 4.735616e-01	ci right 4.932481e-01	k: 4834	n:10000
KS ci ratio: 7.273648e-03	ci left: 9.630998e-01	ci right 9.702249e-01	k: 9668	n:10000
TRIB3   10000 perm   2 sec   (6377 perm/sec)   p_kst 9.668000e-01   p_cons 4.834000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000181/TRIB3.4_1089_10000_0.9668_0.4834_1.png
                gene_name: TRIB3
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 28 percent done.
TRIM32
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.353104e-02	ci left: 7.263334e-01	ci right 7.437295e-01	k: 7351	n:10000
KS ci ratio: 1.188309e-02	ci left: 9.102884e-01	ci right 9.212679e-01	k: 9159	n:10000
TRIM32   10000 perm   2 sec   (5493 perm/sec)   p_kst 9.159000e-01   p_cons 7.351000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000181/TRIM32.4_1966_10000_0.9159_0.7351_1.png
                gene_name: TRIM32
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 30 percent done.
TRIM38
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.007111e-02	ci left: 7.842146e-01	ci right 8.002148e-01	k: 7923	n:10000
Cons ci ratio: 3.713967e-02	ci left: 5.170577e-01	ci right 5.367266e-01	k: 5269	n:10000
KS ci ratio: 2.493607e-02	ci left: 7.029129e-01	ci right 7.207635e-01	k: 7119	n:10000
TRIM38   10000 perm   2 sec   (5822 perm/sec)   p_kst 7.119000e-01   p_cons 5.269000e-01   p_joint 7.923000e-01

Outputting figure to mutsig2_images.part000000000181/TRIM38.4_1422_10000_0.7119_0.5269_0.7923.png
                gene_name: TRIM38
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 32 percent done.
TRIM46
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.022198e-01	ci left: 1.216088e-01	ci right 1.348087e-01	k: 1281	n:10000
Cons ci ratio: 1.288571e-01	ci left: 7.921726e-02	ci right 9.022608e-02	k: 846	n:10000
KS ci ratio: 5.321015e-02	ci left: 3.423355e-01	ci right 3.611510e-01	k: 3517	n:10000
TRIM46   10000 perm   2 sec   (5304 perm/sec)   p_kst 3.517000e-01   p_cons 8.460000e-02   p_joint 1.281000e-01

Joint ci ratio: 6.190544e-02	ci left: 1.618052e-01	ci right 1.721918e-01	k: 3339	n:20000
Cons ci ratio: 9.219200e-02	ci left: 7.906552e-02	ci right 8.675625e-02	k: 1657	n:20000
KS ci ratio: 3.730563e-02	ci left: 3.490119e-01	ci right 3.623301e-01	k: 7113	n:20000
TRIM46   20000 perm   4 sec   (4776 perm/sec)   p_kst 3.556500e-01   p_cons 8.285000e-02   p_joint 1.669500e-01

Outputting figure to mutsig2_images.part000000000181/TRIM46.4_2320_20000_0.35565_0.08285_0.16695.png
                gene_name: TRIM46
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.083 
      ci_cons_bounds_left: 0.079 
     ci_cons_bounds_right: 0.087 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 34 percent done.
TRAM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.253522e-02	ci left: 7.430088e-01	ci right 7.600445e-01	k: 7516	n:10000
KS ci ratio: 7.296213e-03	ci left: 9.628897e-01	ci right 9.700352e-01	k: 9666	n:10000
TRAM1   10000 perm   2 sec   (6398 perm/sec)   p_kst 9.666000e-01   p_cons 7.516000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000181/TRAM1.3_1169_10000_0.9666_0.7516_1.png
                gene_name: TRAM1
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 36 percent done.
TRAM1L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.320867e-03	ci left: 9.791993e-01	ci right 9.845147e-01	k: 9820	n:10000
Cons ci ratio: 5.138321e-03	ci left: 9.804856e-01	ci right 9.856275e-01	k: 9832	n:10000
KS ci ratio: 4.878967e-02	ci left: 3.826132e-01	ci right 4.018496e-01	k: 3922	n:10000
TRAM1L1   10000 perm   2 sec   (6387 perm/sec)   p_kst 3.922000e-01   p_cons 9.832000e-01   p_joint 9.820000e-01

Outputting figure to mutsig2_images.part000000000181/TRAM1L1.3_1114_10000_0.3922_0.9832_0.982.png
                gene_name: TRAM1L1
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 38 percent done.
TRAPPC10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.158783e-02	ci left: 9.142005e-01	ci right 9.249535e-01	k: 9197	n:10000
Cons ci ratio: 3.548895e-02	ci left: 5.396851e-01	ci right 5.592861e-01	k: 5495	n:10000
KS ci ratio: 1.632061e-02	ci left: 8.451935e-01	ci right 8.592007e-01	k: 8523	n:10000
TRAPPC10   10000 perm   2 sec   (4879 perm/sec)   p_kst 8.523000e-01   p_cons 5.495000e-01   p_joint 9.197000e-01

Outputting figure to mutsig2_images.part000000000181/TRAPPC10.3_3872_10000_0.8523_0.5495_0.9197.png
                gene_name: TRAPPC10
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 40 percent done.
TREML2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.893690e-02	ci left: 2.975703e-01	ci right 3.157424e-01	k: 3066	n:10000
Cons ci ratio: 6.833256e-02	ci left: 2.390661e-01	ci right 2.560812e-01	k: 2475	n:10000
KS ci ratio: 4.620859e-02	ci left: 4.087065e-01	ci right 4.281410e-01	k: 4184	n:10000
TREML2   10000 perm   1 sec   (7128 perm/sec)   p_kst 4.184000e-01   p_cons 2.475000e-01   p_joint 3.066000e-01

Outputting figure to mutsig2_images.part000000000181/TREML2.3_986_10000_0.4184_0.2475_0.3066.png
                gene_name: TREML2
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 43 percent done.
TRERF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.493607e-02	ci left: 7.029129e-01	ci right 7.207635e-01	k: 7119	n:10000
Cons ci ratio: 7.679345e-02	ci left: 1.987011e-01	ci right 2.146701e-01	k: 2066	n:10000
KS ci ratio: 5.569957e-03	ci left: 9.773822e-01	ci right 9.829331e-01	k: 9803	n:10000
TRERF1   10000 perm   2 sec   (4938 perm/sec)   p_kst 9.803000e-01   p_cons 2.066000e-01   p_joint 7.119000e-01

Outputting figure to mutsig2_images.part000000000181/TRERF1.3_3659_10000_0.9803_0.2066_0.7119.png
                gene_name: TRERF1
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 45 percent done.
TRIM10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.325833e-02	ci left: 8.912866e-01	ci right 9.032809e-01	k: 8974	n:10000
Cons ci ratio: 4.578402e-02	ci left: 4.131910e-01	ci right 4.326539e-01	k: 4229	n:10000
KS ci ratio: 1.098128e-02	ci left: 9.220356e-01	ci right 9.323139e-01	k: 9273	n:10000
TRIM10   10000 perm   2 sec   (6589 perm/sec)   p_kst 9.273000e-01   p_cons 4.229000e-01   p_joint 8.974000e-01

Outputting figure to mutsig2_images.part000000000181/TRIM10.3_1562_10000_0.9273_0.4229_0.8974.png
                gene_name: TRIM10
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 47 percent done.
TRIM11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.411267e-02	ci left: 5.592250e-01	ci right 5.787348e-01	k: 5690	n:10000
KS ci ratio: 1.915270e-02	ci left: 7.994305e-01	ci right 8.149901e-01	k: 8073	n:10000
TRIM11   10000 perm   2 sec   (5829 perm/sec)   p_kst 8.073000e-01   p_cons 5.690000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000181/TRIM11.3_1431_10000_0.8073_0.569_1.png
                gene_name: TRIM11
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 49 percent done.
TRIM15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.627786e-02	ci left: 1.636672e-01	ci right 1.785250e-01	k: 1710	n:10000
Cons ci ratio: 4.089238e-02	ci left: 4.689664e-01	ci right 4.886460e-01	k: 4788	n:10000
KS ci ratio: 1.425481e-01	ci left: 6.526833e-02	ci right 7.538371e-02	k: 702	n:10000
TRIM15   10000 perm   2 sec   (5991 perm/sec)   p_kst 7.020000e-02   p_cons 4.788000e-01   p_joint 1.710000e-01

Joint ci ratio: 6.306507e-02	ci left: 1.567700e-01	ci right 1.670285e-01	k: 3237	n:20000
Cons ci ratio: 3.008732e-02	ci left: 4.521251e-01	ci right 4.659868e-01	k: 9181	n:20000
KS ci ratio: 1.030640e-01	ci left: 6.396343e-02	ci right 7.096296e-02	k: 1348	n:20000
TRIM15   20000 perm   4 sec   (5262 perm/sec)   p_kst 6.740000e-02   p_cons 4.590500e-01   p_joint 1.618500e-01

Joint ci ratio: 4.653266e-02	ci left: 1.868295e-01	ci right 1.957637e-01	k: 5738	n:30000
Cons ci ratio: 2.461392e-02	ci left: 4.524496e-01	ci right 4.637585e-01	k: 13743	n:30000
KS ci ratio: 8.389662e-02	ci left: 6.498045e-02	ci right 7.070358e-02	k: 2034	n:30000
TRIM15   30000 perm   6 sec   (4948 perm/sec)   p_kst 6.780000e-02   p_cons 4.581000e-01   p_joint 1.912667e-01

Outputting figure to mutsig2_images.part000000000181/TRIM15.3_1426_30000_0.0678_0.4581_0.19127.png
                gene_name: TRIM15
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.068 
        ci_ks_bounds_left: 0.065 
       ci_ks_bounds_right: 0.071 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 51 percent done.
TRIM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.432366e-02	ci left: 4.290429e-01	ci right 4.485928e-01	k: 4388	n:10000
KS ci ratio: 2.276448e-02	ci left: 7.391670e-01	ci right 7.562885e-01	k: 7478	n:10000
TRIM2   10000 perm   2 sec   (5702 perm/sec)   p_kst 7.478000e-01   p_cons 4.388000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000181/TRIM2.3_2364_10000_0.7478_0.4388_1.png
                gene_name: TRIM2
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 53 percent done.
TRIM21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.120650e-02	ci left: 3.599296e-01	ci right 3.789466e-01	k: 3694	n:10000
Cons ci ratio: 4.602870e-02	ci left: 4.105999e-01	ci right 4.300466e-01	k: 4203	n:10000
KS ci ratio: 5.297765e-02	ci left: 3.443228e-01	ci right 3.631625e-01	k: 3537	n:10000
TRIM21   10000 perm   1 sec   (6680 perm/sec)   p_kst 3.537000e-01   p_cons 4.203000e-01   p_joint 3.694000e-01

Outputting figure to mutsig2_images.part000000000181/TRIM21.3_1452_10000_0.3537_0.4203_0.3694.png
                gene_name: TRIM21
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 55 percent done.
TRIM22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.113034e-02	ci left: 6.035728e-01	ci right 6.227612e-01	k: 6132	n:10000
Cons ci ratio: 4.912899e-02	ci left: 3.793287e-01	ci right 3.985361e-01	k: 3889	n:10000
KS ci ratio: 3.913147e-02	ci left: 4.909512e-01	ci right 5.106484e-01	k: 5008	n:10000
TRIM22   10000 perm   2 sec   (5927 perm/sec)   p_kst 5.008000e-01   p_cons 3.889000e-01   p_joint 6.132000e-01

Outputting figure to mutsig2_images.part000000000181/TRIM22.3_1525_10000_0.5008_0.3889_0.6132.png
                gene_name: TRIM22
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 57 percent done.
TRIM23
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.822401e-02	ci left: 3.027268e-01	ci right 3.209830e-01	k: 3118	n:10000
Cons ci ratio: 4.005790e-02	ci left: 4.792569e-01	ci right 4.989495e-01	k: 4891	n:10000
KS ci ratio: 6.478410e-02	ci left: 2.592386e-01	ci right 2.766968e-01	k: 2679	n:10000
TRIM23   10000 perm   2 sec   (5999 perm/sec)   p_kst 2.679000e-01   p_cons 4.891000e-01   p_joint 3.118000e-01

Outputting figure to mutsig2_images.part000000000181/TRIM23.3_1836_10000_0.2679_0.4891_0.3118.png
                gene_name: TRIM23
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 60 percent done.
TRIM24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.577795e-02	ci left: 2.030380e-01	ci right 2.191306e-01	k: 2110	n:10000
Cons ci ratio: 8.455437e-02	ci left: 1.693677e-01	ci right 1.844210e-01	k: 1768	n:10000
KS ci ratio: 7.098191e-02	ci left: 2.253355e-01	ci right 2.420199e-01	k: 2336	n:10000
TRIM24   10000 perm   2 sec   (5110 perm/sec)   p_kst 2.336000e-01   p_cons 1.768000e-01   p_joint 2.110000e-01

Outputting figure to mutsig2_images.part000000000181/TRIM24.3_3229_10000_0.2336_0.1768_0.211.png
                gene_name: TRIM24
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 62 percent done.
TRIM36
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.673487e-02	ci left: 6.732741e-01	ci right 6.916195e-01	k: 6825	n:10000
KS ci ratio: 9.113168e-03	ci left: 9.442976e-01	ci right 9.530386e-01	k: 9488	n:10000
TRIM36   10000 perm   2 sec   (5608 perm/sec)   p_kst 9.488000e-01   p_cons 6.825000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000181/TRIM36.3_2478_10000_0.9488_0.6825_1.png
                gene_name: TRIM36
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 64 percent done.
TRIM39
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.556785e-02	ci left: 5.385833e-01	ci right 5.581885e-01	k: 5484	n:10000
Cons ci ratio: 5.043521e-02	ci left: 3.669909e-01	ci right 3.860810e-01	k: 3765	n:10000
KS ci ratio: 3.513917e-02	ci left: 5.445937e-01	ci right 5.641746e-01	k: 5544	n:10000
TRIM39   10000 perm   2 sec   (6141 perm/sec)   p_kst 5.544000e-01   p_cons 3.765000e-01   p_joint 5.484000e-01

Outputting figure to mutsig2_images.part000000000181/TRIM39.3_1585_10000_0.5544_0.3765_0.5484.png
                gene_name: TRIM39
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 66 percent done.
TRIM47
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.354587e-02	ci left: 5.674464e-01	ci right 5.869086e-01	k: 5772	n:10000
Cons ci ratio: 3.543881e-02	ci left: 5.403863e-01	ci right 5.599845e-01	k: 5502	n:10000
KS ci ratio: 8.176015e-02	ci left: 1.792031e-01	ci right 1.945798e-01	k: 1868	n:10000
TRIM47   10000 perm   2 sec   (5886 perm/sec)   p_kst 1.868000e-01   p_cons 5.502000e-01   p_joint 5.772000e-01

Outputting figure to mutsig2_images.part000000000181/TRIM47.3_1941_10000_0.1868_0.5502_0.5772.png
                gene_name: TRIM47
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 68 percent done.
TRIM49
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.513557e-02	ci left: 8.635571e-01	ci right 8.768264e-01	k: 8703	n:10000
Cons ci ratio: 4.744543e-02	ci left: 3.959551e-01	ci right 4.152999e-01	k: 4056	n:10000
KS ci ratio: 1.513557e-02	ci left: 8.635571e-01	ci right 8.768264e-01	k: 8703	n:10000
TRIM49   10000 perm   2 sec   (6259 perm/sec)   p_kst 8.703000e-01   p_cons 4.056000e-01   p_joint 8.703000e-01

Outputting figure to mutsig2_images.part000000000181/TRIM49.3_1383_10000_0.8703_0.4056_0.8703.png
                gene_name: TRIM49
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.88 

Current progress: 70 percent done.
TRIM50
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.455968e-02	ci left: 7.091690e-01	ci right 7.269038e-01	k: 7181	n:10000
KS ci ratio: 2.460821e-02	ci left: 7.083616e-01	ci right 7.261116e-01	k: 7173	n:10000
TRIM50   10000 perm   2 sec   (6226 perm/sec)   p_kst 7.173000e-01   p_cons 7.181000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000181/TRIM50.3_1488_10000_0.7173_0.7181_1.png
                gene_name: TRIM50
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
TRIM56
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.526021e-02	ci left: 5.428906e-01	ci right 5.624787e-01	k: 5527	n:10000
Cons ci ratio: 8.519871e-02	ci left: 1.672051e-01	ci right 1.821849e-01	k: 1746	n:10000
KS ci ratio: 1.581194e-02	ci left: 8.531464e-01	ci right 8.668432e-01	k: 8601	n:10000
TRIM56   10000 perm   2 sec   (5770 perm/sec)   p_kst 8.601000e-01   p_cons 1.746000e-01   p_joint 5.527000e-01

Outputting figure to mutsig2_images.part000000000181/TRIM56.3_2272_10000_0.8601_0.1746_0.5527.png
                gene_name: TRIM56
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 74 percent done.
TRAF5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.541488e-03	ci left: 9.900531e-01	ci right 9.936515e-01	k: 9920	n:10000
KS ci ratio: 5.987856e-02	ci left: 2.909285e-01	ci right 3.089882e-01	k: 2999	n:10000
TRAF5   10000 perm   2 sec   (6235 perm/sec)   p_kst 2.999000e-01   p_cons 9.920000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000181/TRAF5.2_1714_10000_0.2999_0.992_1.png
                gene_name: TRAF5
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
TRAIP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.494084e-02	ci left: 4.222622e-01	ci right 4.417774e-01	k: 4320	n:10000
Cons ci ratio: 5.412073e-02	ci left: 3.346859e-01	ci right 3.534050e-01	k: 3440	n:10000
KS ci ratio: 8.403543e-02	ci left: 1.711374e-01	ci right 1.862502e-01	k: 1786	n:10000
TRAIP   10000 perm   2 sec   (6424 perm/sec)   p_kst 1.786000e-01   p_cons 3.440000e-01   p_joint 4.320000e-01

Outputting figure to mutsig2_images.part000000000181/TRAIP.2_1470_10000_0.1786_0.344_0.432.png
                gene_name: TRAIP
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 79 percent done.
TREM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.501604e-02	ci left: 2.578534e-01	ci right 2.752827e-01	k: 2665	n:10000
Cons ci ratio: 1.079470e-01	ci left: 1.101767e-01	ci right 1.228477e-01	k: 1164	n:10000
KS ci ratio: 1.958849e-02	ci left: 7.922262e-01	ci right 8.079986e-01	k: 8002	n:10000
TREM1   10000 perm   1 sec   (6882 perm/sec)   p_kst 8.002000e-01   p_cons 1.164000e-01   p_joint 2.665000e-01

Joint ci ratio: 5.426872e-02	ci left: 2.012544e-01	ci right 2.125310e-01	k: 4137	n:20000
Cons ci ratio: 7.794982e-02	ci left: 1.078575e-01	ci right 1.166556e-01	k: 2244	n:20000
KS ci ratio: 1.368395e-02	ci left: 7.984799e-01	ci right 8.095316e-01	k: 16081	n:20000
TREM1   20000 perm   3 sec   (5946 perm/sec)   p_kst 8.040500e-01   p_cons 1.122000e-01   p_joint 2.068500e-01

Outputting figure to mutsig2_images.part000000000181/TREM1.2_721_20000_0.80405_0.1122_0.20685.png
                gene_name: TREM1
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 81 percent done.
TRHR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.265884e-02	ci left: 1.759564e-01	ci right 1.912283e-01	k: 1835	n:10000
Cons ci ratio: 1.176608e-01	ci left: 9.399250e-02	ci right 1.058417e-01	k: 998	n:10000
KS ci ratio: 2.760228e-02	ci left: 6.591754e-01	ci right 6.777264e-01	k: 6685	n:10000
TRHR   10000 perm   2 sec   (6661 perm/sec)   p_kst 6.685000e-01   p_cons 9.980000e-02   p_joint 1.835000e-01

Joint ci ratio: 7.633143e-02	ci left: 1.120355e-01	ci right 1.209763e-01	k: 2329	n:20000
Cons ci ratio: 8.308492e-02	ci left: 9.597378e-02	ci right 1.043429e-01	k: 2002	n:20000
KS ci ratio: 1.929872e-02	ci left: 6.669512e-01	ci right 6.799984e-01	k: 13470	n:20000
TRHR   20000 perm   3 sec   (5789 perm/sec)   p_kst 6.735000e-01   p_cons 1.001000e-01   p_joint 1.164500e-01

Outputting figure to mutsig2_images.part000000000181/TRHR.2_1205_20000_0.6735_0.1001_0.11645.png
                gene_name: TRHR
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.096 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 83 percent done.
TRIL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.541019e-02	ci left: 5.407869e-01	ci right 5.603836e-01	k: 5506	n:10000
Cons ci ratio: 5.209730e-02	ci left: 3.519757e-01	ci right 3.709051e-01	k: 3614	n:10000
KS ci ratio: 2.509415e-02	ci left: 7.002900e-01	ci right 7.181879e-01	k: 7093	n:10000
TRIL   10000 perm   2 sec   (5810 perm/sec)   p_kst 7.093000e-01   p_cons 3.614000e-01   p_joint 5.506000e-01

Outputting figure to mutsig2_images.part000000000181/TRIL.2_2440_10000_0.7093_0.3614_0.5506.png
                gene_name: TRIL
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 85 percent done.
TRIM16
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 87 percent done.
TRIM16L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.878092e-02	ci left: 4.954504e-01	ci right 5.151465e-01	k: 5053	n:10000
KS ci ratio: 1.531595e-02	ci left: 8.608001e-01	ci right 8.741851e-01	k: 8676	n:10000
TRIM16L   10000 perm   2 sec   (6622 perm/sec)   p_kst 8.676000e-01   p_cons 5.053000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000181/TRIM16L.2_1063_10000_0.8676_0.5053_1.png
                gene_name: TRIM16L
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
TRIM25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.221808e-02	ci left: 4.530892e-01	ci right 4.727324e-01	k: 4629	n:10000
Cons ci ratio: 6.471812e-02	ci left: 2.596344e-01	ci right 2.771008e-01	k: 2683	n:10000
KS ci ratio: 1.433170e-01	ci left: 6.459169e-02	ci right 7.466078e-02	k: 695	n:10000
TRIM25   10000 perm   2 sec   (6084 perm/sec)   p_kst 6.950000e-02   p_cons 2.683000e-01   p_joint 4.629000e-01

Joint ci ratio: 5.511802e-02	ci left: 1.962564e-01	ci right 2.074304e-01	k: 4036	n:20000
Cons ci ratio: 4.592662e-02	ci left: 2.608285e-01	ci right 2.731394e-01	k: 5339	n:20000
KS ci ratio: 1.020935e-01	ci left: 6.513471e-02	ci right 7.219132e-02	k: 1372	n:20000
TRIM25   20000 perm   4 sec   (5357 perm/sec)   p_kst 6.860000e-02   p_cons 2.669500e-01   p_joint 2.018000e-01

Joint ci ratio: 4.166086e-02	ci left: 2.230969e-01	ci right 2.326225e-01	k: 6835	n:30000
Cons ci ratio: 3.767544e-02	ci left: 2.601447e-01	ci right 2.701675e-01	k: 7954	n:30000
KS ci ratio: 8.238657e-02	ci left: 6.726865e-02	ci right 7.308159e-02	k: 2104	n:30000
TRIM25   30000 perm   6 sec   (5086 perm/sec)   p_kst 7.013333e-02   p_cons 2.651333e-01   p_joint 2.278333e-01

Outputting figure to mutsig2_images.part000000000181/TRIM25.2_1929_30000_0.070133_0.26513_0.22783.png
                gene_name: TRIM25
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.070 
        ci_ks_bounds_left: 0.067 
       ci_ks_bounds_right: 0.073 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 91 percent done.
TRIM26
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.725902e-02	ci left: 3.978474e-01	ci right 4.172065e-01	k: 4075	n:10000
Cons ci ratio: 6.769670e-02	ci left: 2.425253e-01	ci right 2.596199e-01	k: 2510	n:10000
KS ci ratio: 4.652327e-02	ci left: 4.054184e-01	ci right 4.248311e-01	k: 4151	n:10000
TRIM26   10000 perm   2 sec   (6275 perm/sec)   p_kst 4.151000e-01   p_cons 2.510000e-01   p_joint 4.075000e-01

Outputting figure to mutsig2_images.part000000000181/TRIM26.2_1648_10000_0.4151_0.251_0.4075.png
                gene_name: TRIM26
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 94 percent done.
TRIM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.551511e-03	ci left: 9.604756e-01	ci right 9.678508e-01	k: 9643	n:10000
Cons ci ratio: 4.101545e-02	ci left: 4.674681e-01	ci right 4.871451e-01	k: 4773	n:10000
KS ci ratio: 9.883601e-03	ci left: 9.354766e-01	ci right 9.448650e-01	k: 9403	n:10000
TRIM3   10000 perm   2 sec   (5876 perm/sec)   p_kst 9.403000e-01   p_cons 4.773000e-01   p_joint 9.643000e-01

Outputting figure to mutsig2_images.part000000000181/TRIM3.2_2279_10000_0.9403_0.4773_0.9643.png
                gene_name: TRIM3
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 96 percent done.
TRIM4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.672464e-02	ci left: 5.226626e-01	ci right 5.423184e-01	k: 5325	n:10000
Cons ci ratio: 4.346137e-02	ci left: 4.387185e-01	ci right 4.583115e-01	k: 4485	n:10000
KS ci ratio: 4.654243e-02	ci left: 4.052191e-01	ci right 4.246305e-01	k: 4149	n:10000
TRIM4   10000 perm   2 sec   (6220 perm/sec)   p_kst 4.149000e-01   p_cons 4.485000e-01   p_joint 5.325000e-01

Outputting figure to mutsig2_images.part000000000181/TRIM4.2_1531_10000_0.4149_0.4485_0.5325.png
                gene_name: TRIM4
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 98 percent done.
TRIM43
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.973651e-02	ci left: 2.316560e-01	ci right 2.484957e-01	k: 2400	n:10000
Cons ci ratio: 3.429577e-03	ci left: 9.906076e-01	ci right 9.940963e-01	k: 9925	n:10000
KS ci ratio: 3.498200e-01	ci left: 1.023265e-02	ci right 1.465817e-02	k: 123	n:10000
TRIM43   10000 perm   1 sec   (6828 perm/sec)   p_kst 1.230000e-02   p_cons 9.925000e-01   p_joint 2.400000e-01

Joint ci ratio: 1.985631e-02	ci left: 6.542408e-01	ci right 6.674124e-01	k: 13217	n:20000
Cons ci ratio: 2.425381e-03	ci left: 9.911509e-01	ci right 9.936026e-01	k: 19849	n:20000
KS ci ratio: 2.356187e-01	ci left: 1.204081e-02	ci right 1.530284e-02	k: 272	n:20000
TRIM43   20000 perm   3 sec   (5909 perm/sec)   p_kst 1.360000e-02   p_cons 9.924500e-01   p_joint 6.608500e-01

Joint ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
Cons ci ratio: 1.931678e-03	ci left: 9.917773e-01	ci right 9.937254e-01	k: 29784	n:30000
KS ci ratio: 1.964352e-01	ci left: 1.181229e-02	ci right 1.441660e-02	k: 392	n:30000
TRIM43   30000 perm   5 sec   (5597 perm/sec)   p_kst 1.306667e-02   p_cons 9.928000e-01   p_joint 1

Joint ci ratio: 9.799510e-05	ci left: 9.999078e-01	ci right 1	k: 40000	n:40000
Cons ci ratio: 1.674858e-03	ci left: 9.918957e-01	ci right 9.935815e-01	k: 39711	n:40000
KS ci ratio: 1.707803e-01	ci left: 1.188895e-02	ci right 1.413257e-02	k: 519	n:40000
TRIM43   40000 perm   7 sec   (5364 perm/sec)   p_kst 1.297500e-02   p_cons 9.927750e-01   p_joint 1

Joint ci ratio: 7.839686e-05	ci left: 9.999262e-01	ci right 1	k: 50000	n:50000
Cons ci ratio: 1.501176e-03	ci left: 9.919565e-01	ci right 9.934654e-01	k: 49637	n:50000
KS ci ratio: 1.535910e-01	ci left: 1.187154e-02	ci right 1.386561e-02	k: 642	n:50000
TRIM43   50000 perm   10 sec   (5180 perm/sec)   p_kst 1.284000e-02   p_cons 9.927400e-01   p_joint 1

Joint ci ratio: 6.533116e-05	ci left: 9.999385e-01	ci right 1	k: 60000	n:60000
Cons ci ratio: 1.364374e-03	ci left: 9.920908e-01	ci right 9.934609e-01	k: 59568	n:60000
KS ci ratio: 1.393516e-01	ci left: 1.210892e-02	ci right 1.393864e-02	k: 780	n:60000
TRIM43   60000 perm   12 sec   (5029 perm/sec)   p_kst 1.300000e-02   p_cons 9.928000e-01   p_joint 1

Joint ci ratio: 5.599840e-05	ci left: 9.999473e-01	ci right 1	k: 70000	n:70000
Cons ci ratio: 1.259178e-03	ci left: 9.921904e-01	ci right 9.934540e-01	k: 69499	n:70000
KS ci ratio: 1.290984e-01	ci left: 1.216013e-02	ci right 1.385202e-02	k: 909	n:70000
TRIM43   70000 perm   14 sec   (4908 perm/sec)   p_kst 1.298571e-02   p_cons 9.928429e-01   p_joint 1

Joint ci ratio: 4.899878e-05	ci left: 9.999539e-01	ci right 1	k: 80000	n:80000
Cons ci ratio: 1.176085e-03	ci left: 9.922547e-01	ci right 9.934342e-01	k: 79429	n:80000
KS ci ratio: 1.202346e-01	ci left: 1.232354e-02	ci right 1.391206e-02	k: 1048	n:80000
TRIM43   80000 perm   17 sec   (4788 perm/sec)   p_kst 1.310000e-02   p_cons 9.928625e-01   p_joint 1

Joint ci ratio: 2.826786e-03	ci left: 9.539296e-01	ci right 9.566409e-01	k: 85977	n:90000
Cons ci ratio: 1.092659e-03	ci left: 9.925028e-01	ci right 9.935984e-01	k: 89376	n:90000
KS ci ratio: 1.127368e-01	ci left: 1.250773e-02	ci right 1.401277e-02	k: 1192	n:90000
TRIM43   90000 perm   19 sec   (4681 perm/sec)   p_kst 1.324444e-02   p_cons 9.930667e-01   p_joint 9.553000e-01

Joint ci ratio: 2.687970e-03	ci left: 9.537982e-01	ci right 9.563753e-01	k: 95510	n:100000
Cons ci ratio: 1.040758e-03	ci left: 9.924741e-01	ci right 9.935170e-01	k: 99301	n:100000
KS ci ratio: 1.071383e-01	ci left: 1.250177e-02	ci right 1.392667e-02	k: 1320	n:100000
TRIM43   100000 perm   22 sec   (4571 perm/sec)   p_kst 1.320000e-02   p_cons 9.930100e-01   p_joint 9.551000e-01

Joint ci ratio: 2.556332e-03	ci left: 9.540806e-01	ci right 9.565316e-01	k: 105085	n:110000
Cons ci ratio: 9.884247e-04	ci left: 9.925554e-01	ci right 9.935456e-01	k: 109237	n:110000
KS ci ratio: 1.020848e-01	ci left: 1.255158e-02	ci right 1.391063e-02	k: 1454	n:110000
TRIM43   110000 perm   25 sec   (4479 perm/sec)   p_kst 1.321818e-02   p_cons 9.930636e-01   p_joint 9.553182e-01

Joint ci ratio: 2.560076e-03	ci left: 9.500839e-01	ci right 9.525275e-01	k: 114158	n:120000
Cons ci ratio: 9.563260e-04	ci left: 9.924259e-01	ci right 9.933834e-01	k: 119150	n:120000
KS ci ratio: 9.756060e-02	ci left: 1.262693e-02	ci right 1.393008e-02	k: 1592	n:120000
TRIM43   120000 perm   27 sec   (4390 perm/sec)   p_kst 1.326667e-02   p_cons 9.929167e-01   p_joint 9.513167e-01

Outputting figure to mutsig2_images.part000000000181/TRIM43.2_1365_120000_0.013267_0.99292_0.95132.png
                gene_name: TRIM43
               theta_stop: 0.098 
                    nperm: 120000 
                     p_ks: 0.013 
        ci_ks_bounds_left: 0.013 
       ci_ks_bounds_right: 0.014 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.95 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000181
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 181 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1727>
Subject: Job 8004658: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1727>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000182> was used as the working directory.
Started at Sun Nov 11 15:23:18 2012
Results reported at Sun Nov 11 15:31:15 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000182.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000182.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 182  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000182.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    477.20 sec.
    Max Memory :      4748 MB
    Max Swap   :      7140 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
182
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 182
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 182: processing genes 16376 - 16466
Calculating significance of each gene.
Using projection method.
16376	TRIM58	1.157851e-09
16377	TRIM59	1
16378	TRIM6	7.979504e-01
16379	TRIM6-TRIM34	6.504426e-01
16380	TRIM60	2.740037e-01
16381	TRIM61	1
16382	TRIM62	1
16383	TRIM63	2.652620e-01
16384	TRIM65	3.402073e-01
16385	TRIM67	1
16386	TRIM68	4.698371e-01
16387	TRIM69	1
16388	TRIM7	2.095959e-01
16389	TRIM71	9.393966e-01
16390	TRIM72	1
16391	TRIM73	1
16392	TRIM74	1
16393	TRIM8	5.656541e-01
16394	TRIM9	3.181458e-01
16395	TRIML1	3.458984e-03
16396	TRIML2	7.601118e-01
16397	TRIO	1
16398	TRIOBP	1.476847e-01
16399	TRIP10	6.070721e-01
16400	TRIP11	1
16401	TRIP12	2.531966e-01
16402	TRIP13	4.559385e-01
16403	TRIP4	8.899608e-01
16404	TRIP6	7.362664e-01
16405	TRIT1	7.696783e-01
16406	TRMT1	7.914684e-01
16407	TRMT11	6.732979e-01
16408	TRMT112	1
16409	TRMT12	1
16410	TRMT2A	1
16411	TRMT2B	6.584981e-01
16412	TRMT5	1
16413	TRMT6	7.200999e-01
16414	TRMT61A	1
16415	TRMT61B	1
16416	TRMU	7.972438e-01
16417	TRNAU1AP	1
16418	TRNT1	1
16419	TRO	9.093145e-01
16420	TROAP	5.461028e-01
16421	TROVE2	3.919814e-01
16422	TRPA1	6.786269e-01
16423	TRPC1	1.005071e-01
16424	TRPC3	6.875264e-01
16425	TRPC4	2.498679e-01
16426	TRPC4AP	1.545827e-01
16427	TRPC5	8.470425e-01
16428	TRPC6	8.445837e-01
16429	TRPC7	1
16430	TRPM1	9.787065e-01
16431	TRPM2	9.214288e-01
16432	TRPM3	1
16433	TRPM4	8.274427e-01
16434	TRPM5	1
16435	TRPM6	2.965410e-01
16436	TRPM7	8.649454e-01
16437	TRPM8	8.101136e-01
16438	TRPS1	8.477285e-01
16439	TRPT1	1
16440	TRPV1	3.396426e-01
16441	TRPV2	9.690071e-01
16442	TRPV3	6.531555e-01
16443	TRPV4	9.793215e-01
16444	TRPV5	1.205480e-03
16445	TRPV6	6.021517e-01
16446	TRRAP	9.921531e-01
16447	TRUB1	2.520853e-01
16448	TRUB2	1
16449	TRYX3	2.786007e-01
16450	TSC1	5.815970e-01
16451	TSC2	7.405964e-01
16452	TSC22D1	9.037627e-01
16453	TSC22D2	9.386260e-01
16454	TSC22D3	6.265341e-01
16455	TSC22D4	1
16456	TSEN15	1.598329e-01
16457	TSEN2	8.368908e-01
16458	TSEN34	1
16459	TSEN54	5.814709e-01
16460	TSFM	1
16461	TSG101	6.419208e-01
16462	TSGA10	1
16463	TSGA10IP	2.963971e-01
16464	TSGA13	5.655514e-01
16465	TSGA14	4.281403e-01
16466	TSHB	1
Done

Running MutSig 2:
Scatter job 182: processing genes 16376 - 16466
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
TRIOBP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.194552e-02	ci left: 1.466828e-01	ci right 1.609195e-01	k: 1537	n:10000
Cons ci ratio: 3.308081e-02	ci left: 5.742662e-01	ci right 5.936849e-01	k: 5840	n:10000
KS ci ratio: 1.420057e-01	ci left: 6.575174e-02	ci right 7.590000e-02	k: 707	n:10000
TRIOBP   10000 perm   3 sec   (3910 perm/sec)   p_kst 7.070000e-02   p_cons 5.840000e-01   p_joint 1.537000e-01

Joint ci ratio: 7.661082e-02	ci left: 1.112981e-01	ci right 1.202140e-01	k: 2314	n:20000
Cons ci ratio: 2.316031e-02	ci left: 5.819933e-01	ci right 5.956809e-01	k: 11777	n:20000
KS ci ratio: 1.012254e-01	ci left: 6.620866e-02	ci right 7.331704e-02	k: 1394	n:20000
TRIOBP   20000 perm   7 sec   (2696 perm/sec)   p_kst 6.970000e-02   p_cons 5.888500e-01   p_joint 1.157000e-01

Joint ci ratio: 6.128736e-02	ci left: 1.163101e-01	ci right 1.236970e-01	k: 3599	n:30000
Cons ci ratio: 1.947261e-02	ci left: 5.689817e-01	ci right 5.802038e-01	k: 17238	n:30000
KS ci ratio: 8.198932e-02	ci left: 6.788989e-02	ci right 7.372689e-02	k: 2123	n:30000
TRIOBP   30000 perm   10 sec   (2901 perm/sec)   p_kst 7.076667e-02   p_cons 5.746000e-01   p_joint 1.199667e-01

Outputting figure to mutsig2_images.part000000000182/TRIOBP.20_7484_30000_0.070767_0.5746_0.11997.png
                gene_name: TRIOBP
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.071 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.074 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 2 percent done.
TRPA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.033904e-02	ci left: 7.797545e-01	ci right 7.958775e-01	k: 7879	n:10000
Cons ci ratio: 3.065987e-02	ci left: 6.108046e-01	ci right 6.299252e-01	k: 6204	n:10000
KS ci ratio: 2.412956e-02	ci left: 7.163357e-01	ci right 7.339330e-01	k: 7252	n:10000
TRPA1   10000 perm   2 sec   (4585 perm/sec)   p_kst 7.252000e-01   p_cons 6.204000e-01   p_joint 7.879000e-01

Outputting figure to mutsig2_images.part000000000182/TRPA1.17_3468_10000_0.7252_0.6204_0.7879.png
                gene_name: TRPA1
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 4 percent done.
TRIM58
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.187888e-01	ci left: 2.769020e-02	ci right 3.458650e-02	k: 310	n:10000
Cons ci ratio: 4.096618e-02	ci left: 4.680674e-01	ci right 4.877455e-01	k: 4779	n:10000
KS ci ratio: 3.587123e-01	ci left: 9.685560e-03	ci right 1.400583e-02	k: 117	n:10000
TRIM58   10000 perm   2 sec   (5441 perm/sec)   p_kst 1.170000e-02   p_cons 4.779000e-01   p_joint 3.100000e-02

Joint ci ratio: 1.427146e-01	ci left: 3.375046e-02	ci right 3.898544e-02	k: 726	n:20000
Cons ci ratio: 2.937039e-02	ci left: 4.641117e-01	ci right 4.779967e-01	k: 9421	n:20000
KS ci ratio: 2.665217e-01	ci left: 9.273887e-03	ci right 1.217100e-02	k: 213	n:20000
TRIM58   20000 perm   4 sec   (4950 perm/sec)   p_kst 1.065000e-02   p_cons 4.710500e-01   p_joint 3.630000e-02

Joint ci ratio: 1.350911e-01	ci left: 2.545300e-02	ci right 2.917264e-02	k: 818	n:30000
Cons ci ratio: 2.413682e-02	ci left: 4.621738e-01	ci right 4.734991e-01	k: 14035	n:30000
KS ci ratio: 2.179593e-01	ci left: 9.503598e-03	ci right 1.185927e-02	k: 319	n:30000
TRIM58   30000 perm   6 sec   (4758 perm/sec)   p_kst 1.063333e-02   p_cons 4.678333e-01   p_joint 2.726667e-02

Joint ci ratio: 1.126647e-01	ci left: 2.771767e-02	ci right 3.105112e-02	k: 1174	n:40000
Cons ci ratio: 2.095628e-02	ci left: 4.616761e-01	ci right 4.714787e-01	k: 18663	n:40000
KS ci ratio: 1.898110e-01	ci left: 9.548085e-03	ci right 1.157391e-02	k: 421	n:40000
TRIM58   40000 perm   9 sec   (4630 perm/sec)   p_kst 1.052500e-02   p_cons 4.665750e-01   p_joint 2.935000e-02

Joint ci ratio: 9.177922e-02	ci left: 3.358218e-02	ci right 3.683208e-02	k: 1759	n:50000
Cons ci ratio: 1.873179e-02	ci left: 4.625190e-01	ci right 4.712848e-01	k: 23345	n:50000
KS ci ratio: 1.685656e-01	ci left: 9.797512e-03	ci right 1.161997e-02	k: 534	n:50000
TRIM58   50000 perm   11 sec   (4523 perm/sec)   p_kst 1.068000e-02   p_cons 4.669000e-01   p_joint 3.518000e-02

Joint ci ratio: 7.821288e-02	ci left: 3.860951e-02	ci right 4.176850e-02	k: 2410	n:60000
Cons ci ratio: 1.710152e-02	ci left: 4.628514e-01	ci right 4.708518e-01	k: 28011	n:60000
KS ci ratio: 1.557283e-01	ci left: 9.635717e-03	ci right 1.127882e-02	k: 626	n:60000
TRIM58   60000 perm   14 sec   (4436 perm/sec)   p_kst 1.043333e-02   p_cons 4.668500e-01   p_joint 4.016667e-02

Joint ci ratio: 8.150739e-02	ci left: 3.068048e-02	ci right 3.330137e-02	k: 2238	n:70000
Cons ci ratio: 1.584549e-02	ci left: 4.627558e-01	ci right 4.701613e-01	k: 32652	n:70000
KS ci ratio: 1.452336e-01	ci left: 9.551494e-03	ci right 1.106094e-02	k: 720	n:70000
TRIM58   70000 perm   16 sec   (4354 perm/sec)   p_kst 1.028571e-02   p_cons 4.664571e-01   p_joint 3.197143e-02

Joint ci ratio: 8.173196e-02	ci left: 2.680645e-02	ci right 2.910295e-02	k: 2235	n:80000
Cons ci ratio: 1.480004e-02	ci left: 4.637377e-01	ci right 4.706647e-01	k: 37376	n:80000
KS ci ratio: 1.374641e-01	ci left: 9.370380e-03	ci right 1.076549e-02	k: 804	n:80000
TRIM58   80000 perm   19 sec   (4283 perm/sec)   p_kst 1.005000e-02   p_cons 4.672000e-01   p_joint 2.793750e-02

Joint ci ratio: 7.282528e-02	ci left: 3.005189e-02	ci right 3.233401e-02	k: 2806	n:90000
Cons ci ratio: 1.390733e-02	ci left: 4.655908e-01	ci right 4.721223e-01	k: 42197	n:90000
KS ci ratio: 1.298653e-01	ci left: 9.370982e-03	ci right 1.068311e-02	k: 901	n:90000
TRIM58   90000 perm   21 sec   (4213 perm/sec)   p_kst 1.001111e-02   p_cons 4.688556e-01   p_joint 3.117778e-02

Joint ci ratio: 7.322475e-02	ci left: 2.683888e-02	ci right 2.888862e-02	k: 2785	n:100000
Cons ci ratio: 1.319011e-02	ci left: 4.658929e-01	ci right 4.720889e-01	k: 46899	n:100000
KS ci ratio: 1.230290e-01	ci left: 9.431335e-03	ci right 1.067733e-02	k: 1004	n:100000
TRIM58   100000 perm   24 sec   (4148 perm/sec)   p_kst 1.004000e-02   p_cons 4.689900e-01   p_joint 2.785000e-02

Joint ci ratio: 6.375331e-02	ci left: 3.216694e-02	ci right 3.429413e-02	k: 3654	n:110000
Cons ci ratio: 1.256710e-02	ci left: 4.664016e-01	ci right 4.723091e-01	k: 51629	n:110000
KS ci ratio: 1.173841e-01	ci left: 9.446891e-03	ci right 1.063370e-02	k: 1103	n:110000
TRIM58   110000 perm   27 sec   (4090 perm/sec)   p_kst 1.002727e-02   p_cons 4.693545e-01   p_joint 3.321818e-02

Joint ci ratio: 6.410735e-02	ci left: 2.924712e-02	ci right 3.119234e-02	k: 3625	n:120000
Cons ci ratio: 1.203200e-02	ci left: 4.665313e-01	ci right 4.721869e-01	k: 56323	n:120000
KS ci ratio: 1.111517e-01	ci left: 9.687814e-03	ci right 1.083604e-02	k: 1230	n:120000
TRIM58   120000 perm   30 sec   (4025 perm/sec)   p_kst 1.025000e-02   p_cons 4.693583e-01   p_joint 3.020833e-02

Joint ci ratio: 5.825195e-02	ci left: 3.268011e-02	ci right 3.464845e-02	k: 4375	n:130000
Cons ci ratio: 1.155492e-02	ci left: 4.668608e-01	ci right 4.722944e-01	k: 61045	n:130000
KS ci ratio: 1.069364e-01	ci left: 9.683368e-03	ci right 1.078480e-02	k: 1329	n:130000
TRIM58   130000 perm   33 sec   (3963 perm/sec)   p_kst 1.022308e-02   p_cons 4.695769e-01   p_joint 3.365385e-02

Joint ci ratio: 5.753515e-02	ci left: 3.116872e-02	ci right 3.302215e-02	k: 4492	n:140000
Cons ci ratio: 1.113649e-02	ci left: 4.668757e-01	ci right 4.721113e-01	k: 65729	n:140000
KS ci ratio: 1.033865e-01	ci left: 9.638502e-03	ci right 1.069622e-02	k: 1422	n:140000
TRIM58   140000 perm   36 sec   (3905 perm/sec)   p_kst 1.015714e-02   p_cons 4.694929e-01   p_joint 3.208571e-02

Joint ci ratio: 5.766490e-02	ci left: 2.902416e-02	ci right 3.075407e-02	k: 4482	n:150000
Cons ci ratio: 1.076852e-02	ci left: 4.665185e-01	ci right 4.715760e-01	k: 70357	n:150000
KS ci ratio: 9.967111e-02	ci left: 9.697668e-03	ci right 1.072140e-02	k: 1530	n:150000
TRIM58   150000 perm   39 sec   (3848 perm/sec)   p_kst 1.020000e-02   p_cons 4.690467e-01   p_joint 2.988000e-02

Outputting figure to mutsig2_images.part000000000182/TRIM58.15_1485_150000_0.0102_0.46905_0.02988.png
                gene_name: TRIM58
               theta_stop: 0.100 
                    nperm: 150000 
                     p_ks: 0.010 
        ci_ks_bounds_left: 0.0097 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.030 
     ci_joint_bounds_left: 0.029 
    ci_joint_bounds_right: 0.031 

Current progress: 6 percent done.
TRPM6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.733738e-02	ci left: 3.970506e-01	ci right 4.164037e-01	k: 4067	n:10000
Cons ci ratio: 2.411141e-02	ci left: 7.166386e-01	ci right 7.342299e-01	k: 7255	n:10000
KS ci ratio: 7.002437e-02	ci left: 2.301744e-01	ci right 2.469782e-01	k: 2385	n:10000
TRPM6   10000 perm   2 sec   (4492 perm/sec)   p_kst 2.385000e-01   p_cons 7.255000e-01   p_joint 4.067000e-01

Outputting figure to mutsig2_images.part000000000182/TRPM6.14_6269_10000_0.2385_0.7255_0.4067.png
                gene_name: TRPM6
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 8 percent done.
TRRAP
Processing conservation and coverage...
84% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.354076e-03	ci left: 9.415963e-01	ci right 9.505416e-01	k: 9462	n:10000
Cons ci ratio: 1.696987e-02	ci left: 8.349054e-01	ci right 8.492947e-01	k: 8422	n:10000
KS ci ratio: 2.232405e-02	ci left: 7.465480e-01	ci right 7.635031e-01	k: 7551	n:10000
TRRAP   10000 perm   3 sec   (3302 perm/sec)   p_kst 7.551000e-01   p_cons 8.422000e-01   p_joint 9.462000e-01

Outputting figure to mutsig2_images.part000000000182/TRRAP.14_11773_10000_0.7551_0.8422_0.9462.png
                gene_name: TRRAP
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 10 percent done.
TRPS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.052170e-01	ci left: 3.157898e-02	ci right 3.889501e-02	k: 351	n:10000
Cons ci ratio: 2.954286e-01	ci left: 1.474309e-02	ci right 1.994354e-02	k: 172	n:10000
KS ci ratio: 5.989282e-02	ci left: 2.908294e-01	ci right 3.088873e-01	k: 2998	n:10000
TRPS1   10000 perm   2 sec   (4948 perm/sec)   p_kst 2.998000e-01   p_cons 1.720000e-02   p_joint 3.510000e-02

Joint ci ratio: 1.094202e-01	ci left: 5.699136e-02	ci right 6.363718e-02	k: 1205	n:20000
Cons ci ratio: 2.070849e-01	ci left: 1.577558e-02	ci right 1.946657e-02	k: 351	n:20000
KS ci ratio: 4.240125e-02	ci left: 2.930075e-01	ci right 3.057509e-01	k: 5987	n:20000
TRPS1   20000 perm   4 sec   (4549 perm/sec)   p_kst 2.993500e-01   p_cons 1.755000e-02   p_joint 6.025000e-02

Joint ci ratio: 9.348168e-02	ci left: 5.277268e-02	ci right 5.798051e-02	k: 1660	n:30000
Cons ci ratio: 1.668478e-01	ci left: 1.655765e-02	ci right 1.960336e-02	k: 541	n:30000
KS ci ratio: 3.565751e-02	ci left: 2.820179e-01	ci right 2.922900e-01	k: 8614	n:30000
TRPS1   30000 perm   7 sec   (4401 perm/sec)   p_kst 2.871333e-01   p_cons 1.803333e-02   p_joint 5.533333e-02

Joint ci ratio: 9.146829e-02	ci left: 4.188851e-02	ci right 4.592804e-02	k: 1755	n:40000
Cons ci ratio: 1.435538e-01	ci left: 1.698493e-02	ci right 1.963566e-02	k: 731	n:40000
KS ci ratio: 3.099513e-02	ci left: 2.812015e-01	ci right 2.900796e-01	k: 11425	n:40000
TRPS1   40000 perm   9 sec   (4290 perm/sec)   p_kst 2.856250e-01   p_cons 1.827500e-02   p_joint 4.387500e-02

Joint ci ratio: 8.928513e-02	ci left: 3.546023e-02	ci right 3.879378e-02	k: 1855	n:50000
Cons ci ratio: 1.289743e-01	ci left: 1.696889e-02	ci right 1.932753e-02	k: 906	n:50000
KS ci ratio: 2.768423e-02	ci left: 2.822408e-01	ci right 2.901841e-01	k: 14310	n:50000
TRPS1   50000 perm   12 sec   (4201 perm/sec)   p_kst 2.862000e-01   p_cons 1.812000e-02   p_joint 3.710000e-02

Joint ci ratio: 6.639876e-02	ci left: 5.307420e-02	ci right 5.673567e-02	k: 3293	n:60000
Cons ci ratio: 1.108499e-01	ci left: 1.928378e-02	ci right 2.156294e-02	k: 1224	n:60000
KS ci ratio: 2.502007e-02	ci left: 2.866866e-01	ci right 2.939670e-01	k: 17419	n:60000
TRPS1   60000 perm   15 sec   (4111 perm/sec)   p_kst 2.903167e-01   p_cons 2.040000e-02   p_joint 5.488333e-02

Joint ci ratio: 7.011594e-02	ci left: 4.124219e-02	ci right 4.425301e-02	k: 2991	n:70000
Cons ci ratio: 1.022686e-01	ci left: 1.950482e-02	ci right 2.162090e-02	k: 1438	n:70000
KS ci ratio: 2.313869e-02	ci left: 2.874089e-01	ci right 2.941513e-01	k: 20354	n:70000
TRPS1   70000 perm   17 sec   (4044 perm/sec)   p_kst 2.907714e-01   p_cons 2.054286e-02   p_joint 4.272857e-02

Joint ci ratio: 7.061845e-02	ci left: 3.577626e-02	ci right 3.840745e-02	k: 2966	n:80000
Cons ci ratio: 9.637110e-02	ci left: 1.928512e-02	ci right 2.124988e-02	k: 1620	n:80000
KS ci ratio: 2.161469e-02	ci left: 2.881902e-01	ci right 2.944999e-01	k: 23307	n:80000
TRPS1   80000 perm   20 sec   (3981 perm/sec)   p_kst 2.913375e-01   p_cons 2.025000e-02   p_joint 3.707500e-02

Outputting figure to mutsig2_images.part000000000182/TRPS1.11_3909_80000_0.29134_0.02025_0.037075.png
                gene_name: TRPS1
               theta_stop: 0.096 
                    nperm: 80000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.020 
      ci_cons_bounds_left: 0.019 
     ci_cons_bounds_right: 0.021 
                  p_joint: 0.037 
     ci_joint_bounds_left: 0.036 
    ci_joint_bounds_right: 0.038 

Current progress: 12 percent done.
TRPV5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.851014e-02	ci left: 8.099906e-01	ci right 8.252239e-01	k: 8177	n:10000
Cons ci ratio: 3.143295e-02	ci left: 5.989536e-01	ci right 6.181831e-01	k: 6086	n:10000
KS ci ratio: 3.602976e-02	ci left: 5.321738e-01	ci right 5.518018e-01	k: 5420	n:10000
TRPV5   10000 perm   2 sec   (5426 perm/sec)   p_kst 5.420000e-01   p_cons 6.086000e-01   p_joint 8.177000e-01

Outputting figure to mutsig2_images.part000000000182/TRPV5.11_2250_10000_0.542_0.6086_0.8177.png
                gene_name: TRPV5
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 13 percent done.
TRIP12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.572211e-02	ci left: 6.899028e-01	ci right 7.079812e-01	k: 6990	n:10000
Cons ci ratio: 3.789127e-02	ci left: 5.070521e-01	ci right 5.267381e-01	k: 5169	n:10000
KS ci ratio: 3.393222e-02	ci left: 5.618315e-01	ci right 5.813268e-01	k: 5716	n:10000
TRIP12   10000 perm   2 sec   (4594 perm/sec)   p_kst 5.716000e-01   p_cons 5.169000e-01   p_joint 6.990000e-01

Outputting figure to mutsig2_images.part000000000182/TRIP12.10_6139_10000_0.5716_0.5169_0.699.png
                gene_name: TRIP12
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 15 percent done.
TRPC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.960880e-02	ci left: 2.928118e-01	ci right 3.109038e-01	k: 3018	n:10000
Cons ci ratio: 6.223756e-03	ci left: 9.722779e-01	ci right 9.784409e-01	k: 9755	n:10000
KS ci ratio: 8.114669e-02	ci left: 1.814664e-01	ci right 1.969151e-01	k: 1891	n:10000
TRPC5   10000 perm   2 sec   (5139 perm/sec)   p_kst 1.891000e-01   p_cons 9.755000e-01   p_joint 3.018000e-01

Outputting figure to mutsig2_images.part000000000182/TRPC5.10_2962_10000_0.1891_0.9755_0.3018.png
                gene_name: TRPC5
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 17 percent done.
TRIO
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.631022e-02	ci left: 6.802263e-01	ci right 6.984633e-01	k: 6894	n:10000
Cons ci ratio: 5.013582e-02	ci left: 3.697763e-01	ci right 3.888940e-01	k: 3793	n:10000
KS ci ratio: 2.693860e-02	ci left: 6.699500e-01	ci right 6.883455e-01	k: 6792	n:10000
TRIO   10000 perm   2 sec   (4173 perm/sec)   p_kst 6.792000e-01   p_cons 3.793000e-01   p_joint 6.894000e-01

Outputting figure to mutsig2_images.part000000000182/TRIO.8_9522_10000_0.6792_0.3793_0.6894.png
                gene_name: TRIO
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 19 percent done.
TRO
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.797809e-03	ci left: 9.969128e-01	ci right 9.987779e-01	k: 9980	n:10000
KS ci ratio: 1.310676e-02	ci left: 8.934402e-01	ci right 9.053260e-01	k: 8995	n:10000
TRO   10000 perm   2 sec   (5006 perm/sec)   p_kst 8.995000e-01   p_cons 9.980000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000182/TRO.8_4479_10000_0.8995_0.998_1.png
                gene_name: TRO
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.91 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 21 percent done.
TRPC4AP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.279685e-02	ci left: 2.715119e-01	ci right 2.892162e-01	k: 2803	n:10000
Cons ci ratio: 1.016747e-01	ci left: 1.227823e-01	ci right 1.360344e-01	k: 1293	n:10000
KS ci ratio: 4.132077e-02	ci left: 4.637727e-01	ci right 4.834426e-01	k: 4736	n:10000
TRPC4AP   10000 perm   2 sec   (6292 perm/sec)   p_kst 4.736000e-01   p_cons 1.293000e-01   p_joint 2.803000e-01

Joint ci ratio: 4.874403e-02	ci left: 2.383577e-01	ci right 2.503167e-01	k: 4886	n:20000
Cons ci ratio: 7.273787e-02	ci left: 1.221687e-01	ci right 1.314401e-01	k: 2535	n:20000
KS ci ratio: 2.938218e-02	ci left: 4.639119e-01	ci right 4.777965e-01	k: 9417	n:20000
TRPC4AP   20000 perm   4 sec   (5643 perm/sec)   p_kst 4.708500e-01   p_cons 1.267500e-01   p_joint 2.443000e-01

Outputting figure to mutsig2_images.part000000000182/TRPC4AP.8_2470_20000_0.47085_0.12675_0.2443.png
                gene_name: TRPC4AP
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 23 percent done.
TRPM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.956580e-02	ci left: 3.751490e-01	ci right 3.943182e-01	k: 3847	n:10000
Cons ci ratio: 3.734750e-03	ci left: 9.890590e-01	ci right 9.928466e-01	k: 9911	n:10000
KS ci ratio: 7.015953e-02	ci left: 2.294830e-01	ci right 2.462699e-01	k: 2378	n:10000
TRPM1   10000 perm   2 sec   (4791 perm/sec)   p_kst 2.378000e-01   p_cons 9.911000e-01   p_joint 3.847000e-01

Outputting figure to mutsig2_images.part000000000182/TRPM1.8_4916_10000_0.2378_0.9911_0.3847.png
                gene_name: TRPM1
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.39 

Current progress: 25 percent done.
TRIML1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.417885e-02	ci left: 1.706458e-01	ci right 1.857422e-01	k: 1781	n:10000
Cons ci ratio: 3.611692e-02	ci left: 5.309722e-01	ci right 5.506041e-01	k: 5408	n:10000
KS ci ratio: 1.541967e-01	ci left: 5.600212e-02	ci right 6.545578e-02	k: 606	n:10000
TRIML1   10000 perm   2 sec   (6158 perm/sec)   p_kst 6.060000e-02   p_cons 5.408000e-01   p_joint 1.781000e-01

Joint ci ratio: 7.104720e-02	ci left: 1.273868e-01	ci right 1.368204e-01	k: 2641	n:20000
Cons ci ratio: 2.729568e-02	ci left: 5.006956e-01	ci right 5.146022e-01	k: 10153	n:20000
KS ci ratio: 1.064011e-01	ci left: 6.015897e-02	ci right 6.696859e-02	k: 1270	n:20000
TRIML1   20000 perm   4 sec   (5571 perm/sec)   p_kst 6.350000e-02   p_cons 5.076500e-01   p_joint 1.320500e-01

Joint ci ratio: 5.280891e-02	ci left: 1.510535e-01	ci right 1.592801e-01	k: 4654	n:30000
Cons ci ratio: 2.164615e-02	ci left: 5.165624e-01	ci right 5.278999e-01	k: 15667	n:30000
KS ci ratio: 8.696205e-02	ci left: 6.066825e-02	ci right 6.621666e-02	k: 1902	n:30000
TRIML1   30000 perm   6 sec   (5332 perm/sec)   p_kst 6.340000e-02   p_cons 5.222333e-01   p_joint 1.551333e-01

Outputting figure to mutsig2_images.part000000000182/TRIML1.7_1431_30000_0.0634_0.52223_0.15513.png
                gene_name: TRIML1
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.063 
        ci_ks_bounds_left: 0.061 
       ci_ks_bounds_right: 0.066 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 27 percent done.
TRPM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.064764e-02	ci left: 1.833364e-01	ci right 1.988440e-01	k: 1910	n:10000
Cons ci ratio: 1.436189e-02	ci left: 8.752086e-01	ci right 8.879681e-01	k: 8817	n:10000
KS ci ratio: 1.207044e-01	ci left: 8.961344e-02	ci right 1.012235e-01	k: 953	n:10000
TRPM2   10000 perm   2 sec   (5101 perm/sec)   p_kst 9.530000e-02   p_cons 8.817000e-01   p_joint 1.910000e-01

Joint ci ratio: 5.988238e-02	ci left: 1.711398e-01	ci right 1.817544e-01	k: 3528	n:20000
Cons ci ratio: 1.006407e-02	ci left: 8.790237e-01	ci right 8.879645e-01	k: 17671	n:20000
KS ci ratio: 8.658713e-02	ci left: 8.891121e-02	ci right 9.700757e-02	k: 1858	n:20000
TRPM2   20000 perm   4 sec   (4673 perm/sec)   p_kst 9.290000e-02   p_cons 8.835500e-01   p_joint 1.764000e-01

Outputting figure to mutsig2_images.part000000000182/TRPM2.7_4640_20000_0.0929_0.88355_0.1764.png
                gene_name: TRPM2
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.093 
        ci_ks_bounds_left: 0.089 
       ci_ks_bounds_right: 0.097 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 29 percent done.
TRPM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.509389e-02	ci left: 3.267412e-01	ci right 3.453544e-01	k: 3360	n:10000
Cons ci ratio: 3.046495e-02	ci left: 6.138185e-01	ci right 6.329096e-01	k: 6234	n:10000
KS ci ratio: 6.822271e-02	ci left: 2.396590e-01	ci right 2.566879e-01	k: 2481	n:10000
TRPM3   10000 perm   2 sec   (5192 perm/sec)   p_kst 2.481000e-01   p_cons 6.234000e-01   p_joint 3.360000e-01

Outputting figure to mutsig2_images.part000000000182/TRPM3.7_5347_10000_0.2481_0.6234_0.336.png
                gene_name: TRPM3
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 31 percent done.
TRIML2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.582440e-02	ci left: 1.651411e-01	ci right 1.800501e-01	k: 1725	n:10000
Cons ci ratio: 2.948673e-02	ci left: 6.290949e-01	ci right 6.480243e-01	k: 6386	n:10000
KS ci ratio: 1.344875e-01	ci left: 7.301117e-02	ci right 8.363602e-02	k: 782	n:10000
TRIML2   10000 perm   2 sec   (6331 perm/sec)   p_kst 7.820000e-02   p_cons 6.386000e-01   p_joint 1.725000e-01

Joint ci ratio: 5.986178e-02	ci left: 1.712386e-01	ci right 1.818556e-01	k: 3530	n:20000
Cons ci ratio: 2.271349e-02	ci left: 5.914167e-01	ci right 6.050547e-01	k: 11965	n:20000
KS ci ratio: 9.542997e-02	ci left: 7.407543e-02	ci right 8.154786e-02	k: 1555	n:20000
TRIML2   20000 perm   4 sec   (5687 perm/sec)   p_kst 7.775000e-02   p_cons 5.982500e-01   p_joint 1.765000e-01

Outputting figure to mutsig2_images.part000000000182/TRIML2.6_1192_20000_0.07775_0.59825_0.1765.png
                gene_name: TRIML2
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.078 
        ci_ks_bounds_left: 0.074 
       ci_ks_bounds_right: 0.082 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 33 percent done.
TRPC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.232929e-01	ci left: 8.611301e-02	ci right 9.752607e-02	k: 917	n:10000
Cons ci ratio: 9.386443e-02	ci left: 1.414855e-01	ci right 1.555199e-01	k: 1484	n:10000
KS ci ratio: 1.428763e-01	ci left: 6.497832e-02	ci right 7.507390e-02	k: 699	n:10000
TRPC1   10000 perm   2 sec   (5830 perm/sec)   p_kst 6.990000e-02   p_cons 1.484000e-01   p_joint 9.170000e-02

Joint ci ratio: 1.134279e-01	ci left: 5.314517e-02	ci right 5.958457e-02	k: 1126	n:20000
Cons ci ratio: 6.684975e-02	ci left: 1.417739e-01	ci right 1.516291e-01	k: 2933	n:20000
KS ci ratio: 9.928795e-02	ci left: 6.869925e-02	ci right 7.592569e-02	k: 1445	n:20000
TRPC1   20000 perm   4 sec   (5288 perm/sec)   p_kst 7.225000e-02   p_cons 1.466500e-01   p_joint 5.630000e-02

Joint ci ratio: 8.923694e-02	ci left: 5.773026e-02	ci right 6.315525e-02	k: 1812	n:30000
Cons ci ratio: 5.440914e-02	ci left: 1.434720e-01	ci right 1.515297e-01	k: 4424	n:30000
KS ci ratio: 8.188564e-02	ci left: 6.805338e-02	ci right 7.389670e-02	k: 2128	n:30000
TRPC1   30000 perm   6 sec   (5094 perm/sec)   p_kst 7.093333e-02   p_cons 1.474667e-01   p_joint 6.040000e-02

Outputting figure to mutsig2_images.part000000000182/TRPC1.6_2328_30000_0.070933_0.14747_0.0604.png
                gene_name: TRPC1
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.071 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.074 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.060 
     ci_joint_bounds_left: 0.058 
    ci_joint_bounds_right: 0.063 

Current progress: 35 percent done.
TRPC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.168713e-02	ci left: 4.593790e-01	ci right 4.790390e-01	k: 4692	n:10000
Cons ci ratio: 1.005822e-02	ci left: 9.334051e-01	ci right 9.429377e-01	k: 9383	n:10000
KS ci ratio: 5.848272e-02	ci left: 3.008425e-01	ci right 3.190683e-01	k: 3099	n:10000
TRPC4   10000 perm   2 sec   (5616 perm/sec)   p_kst 3.099000e-01   p_cons 9.383000e-01   p_joint 4.692000e-01

Outputting figure to mutsig2_images.part000000000182/TRPC4.6_2989_10000_0.3099_0.9383_0.4692.png
                gene_name: TRPC4
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 37 percent done.
TRIP11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.719929e-02	ci left: 5.162571e-01	ci right 5.359277e-01	k: 5261	n:10000
Cons ci ratio: 5.493380e-02	ci left: 3.280320e-01	ci right 3.466628e-01	k: 3373	n:10000
KS ci ratio: 3.430777e-02	ci left: 5.564183e-01	ci right 5.759431e-01	k: 5662	n:10000
TRIP11   10000 perm   2 sec   (5002 perm/sec)   p_kst 5.662000e-01   p_cons 3.373000e-01   p_joint 5.261000e-01

Outputting figure to mutsig2_images.part000000000182/TRIP11.5_6024_10000_0.5662_0.3373_0.5261.png
                gene_name: TRIP11
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 38 percent done.
TRPM7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.146986e-02	ci left: 2.801280e-01	ci right 2.979950e-01	k: 2890	n:10000
Cons ci ratio: 6.780486e-02	ci left: 2.419322e-01	ci right 2.590133e-01	k: 2504	n:10000
KS ci ratio: 6.675595e-02	ci left: 2.477650e-01	ci right 2.649772e-01	k: 2563	n:10000
TRPM7   10000 perm   2 sec   (4786 perm/sec)   p_kst 2.563000e-01   p_cons 2.504000e-01   p_joint 2.890000e-01

Outputting figure to mutsig2_images.part000000000182/TRPM7.5_5754_10000_0.2563_0.2504_0.289.png
                gene_name: TRPM7
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 40 percent done.
TRPM8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.692071e-02	ci left: 3.124482e-01	ci right 3.308558e-01	k: 3216	n:10000
Cons ci ratio: 2.104303e-02	ci left: 7.680025e-01	ci right 7.844363e-01	k: 7763	n:10000
KS ci ratio: 7.609790e-02	ci left: 2.016579e-01	ci right 2.177115e-01	k: 2096	n:10000
TRPM8   10000 perm   2 sec   (5502 perm/sec)   p_kst 2.096000e-01   p_cons 7.763000e-01   p_joint 3.216000e-01

Outputting figure to mutsig2_images.part000000000182/TRPM8.5_3411_10000_0.2096_0.7763_0.3216.png
                gene_name: TRPM8
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 42 percent done.
TSC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.581381e-02	ci left: 6.883905e-01	ci right 7.064943e-01	k: 6975	n:10000
KS ci ratio: 8.933874e-03	ci left: 9.462737e-01	ci right 9.548614e-01	k: 9507	n:10000
TSC1   10000 perm   2 sec   (5240 perm/sec)   p_kst 9.507000e-01   p_cons 6.975000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000182/TSC1.5_3579_10000_0.9507_0.6975_1.png
                gene_name: TSC1
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 44 percent done.
TSC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.735700e-02	ci left: 3.968515e-01	ci right 4.162030e-01	k: 4065	n:10000
Cons ci ratio: 8.423637e-02	ci left: 1.704491e-01	ci right 1.855389e-01	k: 1779	n:10000
KS ci ratio: 3.719929e-02	ci left: 5.162571e-01	ci right 5.359277e-01	k: 5261	n:10000
TSC2   10000 perm   2 sec   (4784 perm/sec)   p_kst 5.261000e-01   p_cons 1.779000e-01   p_joint 4.065000e-01

Outputting figure to mutsig2_images.part000000000182/TSC2.5_5588_10000_0.5261_0.1779_0.4065.png
                gene_name: TSC2
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 46 percent done.
TRIM9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.783900e-02	ci left: 1.943656e-01	ci right 2.102082e-01	k: 2022	n:10000
Cons ci ratio: 4.572780e-02	ci left: 4.137890e-01	ci right 4.332556e-01	k: 4235	n:10000
KS ci ratio: 1.102080e-01	ci left: 1.060777e-01	ci right 1.185492e-01	k: 1122	n:10000
TRIM9   10000 perm   2 sec   (6473 perm/sec)   p_kst 1.122000e-01   p_cons 4.235000e-01   p_joint 2.022000e-01

Joint ci ratio: 5.652499e-02	ci left: 1.883417e-01	ci right 1.993475e-01	k: 3876	n:20000
Cons ci ratio: 3.271436e-02	ci left: 4.110020e-01	ci right 4.247219e-01	k: 8357	n:20000
KS ci ratio: 7.846254e-02	ci left: 1.065799e-01	ci right 1.153335e-01	k: 2218	n:20000
TRIM9   20000 perm   3 sec   (5819 perm/sec)   p_kst 1.109000e-01   p_cons 4.178500e-01   p_joint 1.938000e-01

Outputting figure to mutsig2_images.part000000000182/TRIM9.4_2223_20000_0.1109_0.41785_0.1938.png
                gene_name: TRIM9
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 48 percent done.
TROAP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.964445e-02	ci left: 1.871758e-01	ci right 2.028023e-01	k: 1949	n:10000
Cons ci ratio: 1.746502e-02	ci left: 8.269673e-01	ci right 8.416374e-01	k: 8344	n:10000
KS ci ratio: 1.224140e-01	ci left: 8.727953e-02	ci right 9.875882e-02	k: 929	n:10000
TROAP   10000 perm   1 sec   (6830 perm/sec)   p_kst 9.290000e-02   p_cons 8.344000e-01   p_joint 1.949000e-01

Joint ci ratio: 5.372893e-02	ci left: 2.045211e-01	ci right 2.158633e-01	k: 4203	n:20000
Cons ci ratio: 1.227080e-02	ci left: 8.309464e-01	ci right 8.412556e-01	k: 16723	n:20000
KS ci ratio: 8.392559e-02	ci left: 9.420749e-02	ci right 1.025097e-01	k: 1966	n:20000
TROAP   20000 perm   3 sec   (6065 perm/sec)   p_kst 9.830000e-02   p_cons 8.361500e-01   p_joint 2.101500e-01

Outputting figure to mutsig2_images.part000000000182/TROAP.4_2495_20000_0.0983_0.83615_0.21015.png
                gene_name: TROAP
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.098 
        ci_ks_bounds_left: 0.094 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 50 percent done.
TRPC7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.686016e-02	ci left: 4.019315e-01	ci right 4.213200e-01	k: 4116	n:10000
Cons ci ratio: 1.436501e-01	ci left: 6.430174e-02	ci right 7.435091e-02	k: 692	n:10000
KS ci ratio: 5.751282e-02	ci left: 3.079837e-01	ci right 3.263229e-01	k: 3171	n:10000
TRPC7   10000 perm   1 sec   (6803 perm/sec)   p_kst 3.171000e-01   p_cons 6.920000e-02   p_joint 4.116000e-01

Joint ci ratio: 3.052411e-02	ci left: 4.449850e-01	ci right 4.588290e-01	k: 9038	n:20000
Cons ci ratio: 1.029821e-01	ci left: 6.406102e-02	ci right 7.106534e-02	k: 1350	n:20000
KS ci ratio: 4.070536e-02	ci left: 3.103047e-01	ci right 3.232486e-01	k: 6335	n:20000
TRPC7   20000 perm   3 sec   (6039 perm/sec)   p_kst 3.167500e-01   p_cons 6.750000e-02   p_joint 4.519000e-01

Joint ci ratio: 2.845408e-02	ci left: 3.819484e-01	ci right 3.930068e-01	k: 11624	n:30000
Cons ci ratio: 8.463514e-02	ci left: 6.390207e-02	ci right 6.958219e-02	k: 2001	n:30000
KS ci ratio: 3.317704e-02	ci left: 3.122668e-01	ci right 3.228352e-01	k: 9526	n:30000
TRPC7   30000 perm   5 sec   (5769 perm/sec)   p_kst 3.175333e-01   p_cons 6.670000e-02   p_joint 3.874667e-01

Outputting figure to mutsig2_images.part000000000182/TRPC7.4_2637_30000_0.31753_0.0667_0.38747.png
                gene_name: TRPC7
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.067 
      ci_cons_bounds_left: 0.064 
     ci_cons_bounds_right: 0.070 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.39 

Current progress: 52 percent done.
TRIM6-TRIM34
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.812710e-02	ci left: 5.039511e-01	ci right 5.236409e-01	k: 5138	n:10000
KS ci ratio: 1.961298e-02	ci left: 7.918204e-01	ci right 8.076046e-01	k: 7998	n:10000
TRIM6-TRIM34   10000 perm   1 sec   (6815 perm/sec)   p_kst 7.998000e-01   p_cons 5.138000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000182/TRIM6-TRIM34.3_2558_10000_0.7998_0.5138_1.png
                gene_name: TRIM6-TRIM34
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 54 percent done.
TRIM60
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.229061e-02	ci left: 5.860046e-01	ci right 6.053396e-01	k: 5957	n:10000
Cons ci ratio: 8.948304e-02	ci left: 1.537479e-01	ci right 1.682502e-01	k: 1609	n:10000
KS ci ratio: 1.864654e-02	ci left: 8.077560e-01	ci right 8.230598e-01	k: 8155	n:10000
TRIM60   10000 perm   1 sec   (6952 perm/sec)   p_kst 8.155000e-01   p_cons 1.609000e-01   p_joint 5.957000e-01

Outputting figure to mutsig2_images.part000000000182/TRIM60.3_1420_10000_0.8155_0.1609_0.5957.png
                gene_name: TRIM60
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 56 percent done.
TRIM7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.540610e-02	ci left: 1.665170e-01	ci right 1.814734e-01	k: 1739	n:10000
Cons ci ratio: 6.049727e-02	ci left: 2.866670e-01	ci right 3.046522e-01	k: 2956	n:10000
KS ci ratio: 2.288572e-01	ci left: 2.523219e-02	ci right 3.184628e-02	k: 284	n:10000
TRIM7   10000 perm   1 sec   (7350 perm/sec)   p_kst 2.840000e-02   p_cons 2.956000e-01   p_joint 1.739000e-01

Joint ci ratio: 1.175757e-01	ci left: 4.954642e-02	ci right 5.578445e-02	k: 1052	n:20000
Cons ci ratio: 4.280389e-02	ci left: 2.890823e-01	ci right 3.017772e-01	k: 5908	n:20000
KS ci ratio: 1.657632e-01	ci left: 2.494157e-02	ci right 2.949728e-02	k: 543	n:20000
TRIM7   20000 perm   3 sec   (6494 perm/sec)   p_kst 2.715000e-02   p_cons 2.954000e-01   p_joint 5.260000e-02

Joint ci ratio: 8.674324e-02	ci left: 6.096215e-02	ci right 6.652270e-02	k: 1911	n:30000
Cons ci ratio: 3.369423e-02	ci left: 3.056310e-01	ci right 3.161390e-01	k: 9326	n:30000
KS ci ratio: 1.369063e-01	ci left: 2.477622e-02	ci right 2.844956e-02	k: 797	n:30000
TRIM7   30000 perm   5 sec   (6172 perm/sec)   p_kst 2.656667e-02   p_cons 3.108667e-01   p_joint 6.370000e-02

Joint ci ratio: 6.506198e-02	ci left: 8.048664e-02	ci right 8.592405e-02	k: 3327	n:40000
Cons ci ratio: 3.028517e-02	ci left: 2.907076e-01	ci right 2.996722e-01	k: 11807	n:40000
KS ci ratio: 1.182228e-01	ci left: 2.516643e-02	ci right 2.835277e-02	k: 1069	n:40000
TRIM7   40000 perm   7 sec   (5925 perm/sec)   p_kst 2.672500e-02   p_cons 2.951750e-01   p_joint 8.317500e-02

Joint ci ratio: 6.329759e-02	ci left: 6.898059e-02	ci right 7.350934e-02	k: 3561	n:50000
Cons ci ratio: 2.712047e-02	ci left: 2.906860e-01	ci right 2.986979e-01	k: 14734	n:50000
KS ci ratio: 1.056811e-01	ci left: 2.536298e-02	ci right 2.821232e-02	k: 1338	n:50000
TRIM7   50000 perm   9 sec   (5770 perm/sec)   p_kst 2.676000e-02   p_cons 2.946800e-01   p_joint 7.122000e-02

Joint ci ratio: 5.916848e-02	ci left: 6.614618e-02	ci right 7.019571e-02	k: 4089	n:60000
Cons ci ratio: 2.473667e-02	ci left: 2.913858e-01	ci right 2.987007e-01	k: 17702	n:60000
KS ci ratio: 9.628262e-02	ci left: 2.558746e-02	ci right 2.819191e-02	k: 1612	n:60000
TRIM7   60000 perm   11 sec   (5610 perm/sec)   p_kst 2.686667e-02   p_cons 2.950333e-01   p_joint 6.815000e-02

Outputting figure to mutsig2_images.part000000000182/TRIM7.3_1684_60000_0.026867_0.29503_0.06815.png
                gene_name: TRIM7
               theta_stop: 0.096 
                    nperm: 60000 
                     p_ks: 0.027 
        ci_ks_bounds_left: 0.026 
       ci_ks_bounds_right: 0.028 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.068 
     ci_joint_bounds_left: 0.066 
    ci_joint_bounds_right: 0.070 

Current progress: 58 percent done.
TROVE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.545351e-02	ci left: 6.943394e-01	ci right 7.123420e-01	k: 7034	n:10000
Cons ci ratio: 4.847396e-02	ci left: 3.856991e-01	ci right 4.049619e-01	k: 3953	n:10000
KS ci ratio: 2.425669e-02	ci left: 7.142157e-01	ci right 7.318542e-01	k: 7231	n:10000
TROVE2   10000 perm   1 sec   (6882 perm/sec)   p_kst 7.231000e-01   p_cons 3.953000e-01   p_joint 7.034000e-01

Outputting figure to mutsig2_images.part000000000182/TROVE2.3_1706_10000_0.7231_0.3953_0.7034.png
                gene_name: TROVE2
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 60 percent done.
TRPC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.537380e-02	ci left: 4.175767e-01	ci right 4.370657e-01	k: 4273	n:10000
Cons ci ratio: 1.421012e-02	ci left: 8.774593e-01	ci right 8.901162e-01	k: 8839	n:10000
KS ci ratio: 5.426490e-02	ci left: 3.334940e-01	ci right 3.521976e-01	k: 3428	n:10000
TRPC3   10000 perm   2 sec   (5637 perm/sec)   p_kst 3.428000e-01   p_cons 8.839000e-01   p_joint 4.273000e-01

Outputting figure to mutsig2_images.part000000000182/TRPC3.3_2814_10000_0.3428_0.8839_0.4273.png
                gene_name: TRPC3
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 62 percent done.
TRPM4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.472956e-02	ci left: 7.063434e-01	ci right 7.241310e-01	k: 7153	n:10000
Cons ci ratio: 4.270515e-02	ci left: 4.473998e-01	ci right 4.670251e-01	k: 4572	n:10000
KS ci ratio: 4.632269e-02	ci left: 4.075108e-01	ci right 4.269375e-01	k: 4172	n:10000
TRPM4   10000 perm   2 sec   (5212 perm/sec)   p_kst 4.172000e-01   p_cons 4.572000e-01   p_joint 7.153000e-01

Outputting figure to mutsig2_images.part000000000182/TRPM4.3_3745_10000_0.4172_0.4572_0.7153.png
                gene_name: TRPM4
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.72 

Current progress: 63 percent done.
TRPV1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.529504e-02	ci left: 6.969615e-01	ci right 7.149184e-01	k: 7060	n:10000
Cons ci ratio: 4.235415e-02	ci left: 4.514920e-01	ci right 4.711305e-01	k: 4613	n:10000
KS ci ratio: 9.936231e-03	ci left: 9.348550e-01	ci right 9.442869e-01	k: 9397	n:10000
TRPV1   10000 perm   2 sec   (6550 perm/sec)   p_kst 9.397000e-01   p_cons 4.613000e-01   p_joint 7.060000e-01

Outputting figure to mutsig2_images.part000000000182/TRPV1.3_2253_10000_0.9397_0.4613_0.706.png
                gene_name: TRPV1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.71 

Current progress: 65 percent done.
TRPV3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.384600e-01	ci left: 6.904079e-02	ci right 7.940888e-02	k: 741	n:10000
Cons ci ratio: 3.618968e-02	ci left: 5.299709e-01	ci right 5.496059e-01	k: 5398	n:10000
KS ci ratio: 3.220289e-01	ci left: 1.224928e-02	ci right 1.703957e-02	k: 145	n:10000
TRPV3   10000 perm   1 sec   (6835 perm/sec)   p_kst 1.450000e-02   p_cons 5.398000e-01   p_joint 7.410000e-02

Joint ci ratio: 1.030230e-01	ci left: 6.401222e-02	ci right 7.101415e-02	k: 1349	n:20000
Cons ci ratio: 2.468321e-02	ci left: 5.507838e-01	ci right 5.645994e-01	k: 11154	n:20000
KS ci ratio: 2.317754e-01	ci left: 1.246477e-02	ci right 1.577870e-02	k: 281	n:20000
TRPV3   20000 perm   3 sec   (6061 perm/sec)   p_kst 1.405000e-02   p_cons 5.577000e-01   p_joint 6.745000e-02

Joint ci ratio: 9.035612e-02	ci left: 5.635984e-02	ci right 6.172595e-02	k: 1770	n:30000
Cons ci ratio: 2.009842e-02	ci left: 5.534262e-01	ci right 5.646957e-01	k: 16772	n:30000
KS ci ratio: 1.917907e-01	ci left: 1.241520e-02	ci right 1.508019e-02	k: 411	n:30000
TRPV3   30000 perm   5 sec   (5757 perm/sec)   p_kst 1.370000e-02   p_cons 5.590667e-01   p_joint 5.900000e-02

Joint ci ratio: 5.923644e-02	ci left: 9.574448e-02	ci right 1.016139e-01	k: 3946	n:40000
Cons ci ratio: 1.792705e-02	ci left: 5.395789e-01	ci right 5.493646e-01	k: 21779	n:40000
KS ci ratio: 1.650836e-01	ci left: 1.275159e-02	ci right 1.506977e-02	k: 555	n:40000
TRPV3   40000 perm   7 sec   (5580 perm/sec)   p_kst 1.387500e-02   p_cons 5.444750e-01   p_joint 9.865000e-02

Joint ci ratio: 6.018835e-02	ci left: 7.584147e-02	ci right 8.056764e-02	k: 3909	n:50000
Cons ci ratio: 1.600209e-02	ci left: 5.411030e-01	ci right 5.498517e-01	k: 27274	n:50000
KS ci ratio: 1.480884e-01	ci left: 1.279575e-02	ci right 1.486126e-02	k: 690	n:50000
TRPV3   50000 perm   9 sec   (5436 perm/sec)   p_kst 1.380000e-02   p_cons 5.454800e-01   p_joint 7.818000e-02

Joint ci ratio: 7.141309e-02	ci left: 4.610651e-02	ci right 4.953740e-02	k: 2868	n:60000
Cons ci ratio: 1.466338e-02	ci left: 5.396041e-01	ci right 5.475917e-01	k: 32616	n:60000
KS ci ratio: 1.357011e-01	ci left: 1.278513e-02	ci right 1.466234e-02	k: 822	n:60000
TRPV3   60000 perm   11 sec   (5305 perm/sec)   p_kst 1.370000e-02   p_cons 5.436000e-01   p_joint 4.780000e-02

Joint ci ratio: 6.539231e-02	ci left: 4.722961e-02	ci right 5.043650e-02	k: 3417	n:70000
Cons ci ratio: 1.353120e-02	ci left: 5.415308e-01	ci right 5.489226e-01	k: 38166	n:70000
KS ci ratio: 1.256460e-01	ci left: 1.285194e-02	ci right 1.458871e-02	k: 959	n:70000
TRPV3   70000 perm   13 sec   (5192 perm/sec)   p_kst 1.370000e-02   p_cons 5.452286e-01   p_joint 4.881429e-02

Joint ci ratio: 6.561185e-02	ci left: 4.130935e-02	ci right 4.412394e-02	k: 3416	n:80000
Cons ci ratio: 1.265070e-02	ci left: 5.420293e-01	ci right 5.489424e-01	k: 43639	n:80000
KS ci ratio: 1.170531e-01	ci left: 1.301516e-02	ci right 1.464538e-02	k: 1105	n:80000
TRPV3   80000 perm   16 sec   (5088 perm/sec)   p_kst 1.381250e-02   p_cons 5.454875e-01   p_joint 4.270000e-02

Joint ci ratio: 5.777837e-02	ci left: 4.724801e-02	ci right 5.007006e-02	k: 4378	n:90000
Cons ci ratio: 1.189141e-02	ci left: 5.437186e-01	ci right 5.502339e-01	k: 49228	n:90000
KS ci ratio: 1.103251e-01	ci left: 1.306960e-02	ci right 1.460642e-02	k: 1244	n:90000
TRPV3   90000 perm   18 sec   (4995 perm/sec)   p_kst 1.382222e-02   p_cons 5.469778e-01   p_joint 4.864444e-02

Joint ci ratio: 5.418741e-02	ci left: 4.838085e-02	ci right 5.108534e-02	k: 4972	n:100000
Cons ci ratio: 1.127432e-02	ci left: 5.441886e-01	ci right 5.503687e-01	k: 54728	n:100000
KS ci ratio: 1.050235e-01	ci left: 1.301789e-02	ci right 1.447052e-02	k: 1373	n:100000
TRPV3   100000 perm   20 sec   (4905 perm/sec)   p_kst 1.373000e-02   p_cons 5.472800e-01   p_joint 4.972000e-02

Joint ci ratio: 5.263635e-02	ci left: 4.673515e-02	ci right 4.927056e-02	k: 5279	n:110000
Cons ci ratio: 1.075731e-02	ci left: 5.439798e-01	ci right 5.498723e-01	k: 60162	n:110000
KS ci ratio: 1.008625e-01	ci left: 1.286179e-02	ci right 1.423676e-02	k: 1489	n:110000
TRPV3   110000 perm   23 sec   (4816 perm/sec)   p_kst 1.353636e-02   p_cons 5.469273e-01   p_joint 4.799091e-02

Joint ci ratio: 5.243081e-02	ci left: 4.334017e-02	ci right 4.568191e-02	k: 5340	n:120000
Cons ci ratio: 1.030477e-02	ci left: 5.438448e-01	ci right 5.494863e-01	k: 65600	n:120000
KS ci ratio: 9.661232e-02	ci left: 1.287907e-02	ci right 1.419459e-02	k: 1623	n:120000
TRPV3   120000 perm   25 sec   (4729 perm/sec)   p_kst 1.352500e-02   p_cons 5.466667e-01   p_joint 4.450000e-02

Outputting figure to mutsig2_images.part000000000182/TRPV3.3_2441_120000_0.013525_0.54667_0.0445.png
                gene_name: TRPV3
               theta_stop: 0.097 
                    nperm: 120000 
                     p_ks: 0.014 
        ci_ks_bounds_left: 0.013 
       ci_ks_bounds_right: 0.014 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.044 
     ci_joint_bounds_left: 0.043 
    ci_joint_bounds_right: 0.046 

Current progress: 67 percent done.
TRPV6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.692647e-03	ci left: 9.892795e-01	ci right 9.930260e-01	k: 9913	n:10000
Cons ci ratio: 3.054284e-02	ci left: 6.126129e-01	ci right 6.317159e-01	k: 6222	n:10000
KS ci ratio: 2.228181e-02	ci left: 7.472560e-01	ci right 7.641948e-01	k: 7558	n:10000
TRPV6   10000 perm   2 sec   (6550 perm/sec)   p_kst 7.558000e-01   p_cons 6.222000e-01   p_joint 9.913000e-01

Outputting figure to mutsig2_images.part000000000182/TRPV6.3_2238_10000_0.7558_0.6222_0.9913.png
                gene_name: TRPV6
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 69 percent done.
TRYX3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.846382e-02	ci left: 3.857986e-01	ci right 4.050623e-01	k: 3954	n:10000
Cons ci ratio: 9.866011e-03	ci left: 9.356838e-01	ci right 9.450576e-01	k: 9405	n:10000
KS ci ratio: 7.168258e-02	ci left: 2.218801e-01	ci right 2.384774e-01	k: 2301	n:10000
TRYX3   10000 perm   1 sec   (7439 perm/sec)   p_kst 2.301000e-01   p_cons 9.405000e-01   p_joint 3.954000e-01

Outputting figure to mutsig2_images.part000000000182/TRYX3.3_746_10000_0.2301_0.9405_0.3954.png
                gene_name: TRYX3
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 71 percent done.
TSGA10IP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.161806e-01	ci left: 9.623212e-02	ci right 1.082007e-01	k: 1021	n:10000
Cons ci ratio: 1.302053e-01	ci left: 7.766482e-02	ci right 8.857947e-02	k: 830	n:10000
KS ci ratio: 6.818617e-02	ci left: 2.398567e-01	ci right 2.568901e-01	k: 2483	n:10000
TSGA10IP   10000 perm   1 sec   (6756 perm/sec)   p_kst 2.483000e-01   p_cons 8.300000e-02   p_joint 1.021000e-01

Joint ci ratio: 9.496748e-02	ci left: 7.476008e-02	ci right 8.226301e-02	k: 1569	n:20000
Cons ci ratio: 9.855520e-02	ci left: 6.967630e-02	ci right 7.694833e-02	k: 1465	n:20000
KS ci ratio: 4.823469e-02	ci left: 2.422253e-01	ci right 2.542480e-01	k: 4964	n:20000
TSGA10IP   20000 perm   3 sec   (6031 perm/sec)   p_kst 2.482000e-01   p_cons 7.325000e-02   p_joint 7.845000e-02

Outputting figure to mutsig2_images.part000000000182/TSGA10IP.3_1703_20000_0.2482_0.07325_0.07845.png
                gene_name: TSGA10IP
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.073 
      ci_cons_bounds_left: 0.070 
     ci_cons_bounds_right: 0.077 
                  p_joint: 0.078 
     ci_joint_bounds_left: 0.075 
    ci_joint_bounds_right: 0.082 

Current progress: 73 percent done.
TRIM63
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.182907e-02	ci left: 9.110088e-01	ci right 9.219471e-01	k: 9166	n:10000
Cons ci ratio: 1.083156e-01	ci left: 1.094933e-01	ci right 1.221314e-01	k: 1157	n:10000
KS ci ratio: 7.387413e-02	ci left: 2.115188e-01	ci right 2.278448e-01	k: 2196	n:10000
TRIM63   10000 perm   1 sec   (7081 perm/sec)   p_kst 2.196000e-01   p_cons 1.157000e-01   p_joint 9.166000e-01

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 7.627586e-02	ci left: 1.121830e-01	ci right 1.211288e-01	k: 2332	n:20000
KS ci ratio: 5.067345e-02	ci left: 2.244300e-01	ci right 2.361485e-01	k: 4605	n:20000
TRIM63   20000 perm   3 sec   (6223 perm/sec)   p_kst 2.302500e-01   p_cons 1.166000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000182/TRIM63.2_1098_20000_0.23025_0.1166_1.png
                gene_name: TRIM63
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
TRIM65
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.256777e-02	ci left: 4.489967e-01	ci right 4.686273e-01	k: 4588	n:10000
Cons ci ratio: 4.541090e-02	ci left: 4.171780e-01	ci right 4.366646e-01	k: 4269	n:10000
KS ci ratio: 2.964659e-02	ci left: 6.265817e-01	ci right 6.455390e-01	k: 6361	n:10000
TRIM65   10000 perm   1 sec   (7400 perm/sec)   p_kst 6.361000e-01   p_cons 4.269000e-01   p_joint 4.588000e-01

Outputting figure to mutsig2_images.part000000000182/TRIM65.2_1578_10000_0.6361_0.4269_0.4588.png
                gene_name: TRIM65
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 77 percent done.
TRIM68
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.015053e-02	ci left: 2.890454e-01	ci right 3.070724e-01	k: 2980	n:10000
Cons ci ratio: 6.528310e-02	ci left: 2.562705e-01	ci right 2.736666e-01	k: 2649	n:10000
KS ci ratio: 4.404582e-02	ci left: 4.321347e-01	ci right 4.516992e-01	k: 4419	n:10000
TRIM68   10000 perm   1 sec   (7126 perm/sec)   p_kst 4.419000e-01   p_cons 2.649000e-01   p_joint 2.980000e-01

Outputting figure to mutsig2_images.part000000000182/TRIM68.2_1482_10000_0.4419_0.2649_0.298.png
                gene_name: TRIM68
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 79 percent done.
TRIM72
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.956981e-02	ci left: 6.277880e-01	ci right 6.467320e-01	k: 6373	n:10000
KS ci ratio: 5.402496e-02	ci left: 3.354805e-01	ci right 3.542099e-01	k: 3448	n:10000
TRIM72   10000 perm   1 sec   (7500 perm/sec)   p_kst 3.448000e-01   p_cons 6.373000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000182/TRIM72.2_1458_10000_0.3448_0.6373_1.png
                gene_name: TRIM72
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
TRIM8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.057608e-02	ci left: 7.758023e-01	ci right 7.920319e-01	k: 7840	n:10000
KS ci ratio: 6.092113e-02	ci left: 2.837935e-01	ci right 3.017273e-01	k: 2927	n:10000
TRIM8   10000 perm   1 sec   (7082 perm/sec)   p_kst 2.927000e-01   p_cons 7.840000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000182/TRIM8.2_1680_10000_0.2927_0.784_1.png
                gene_name: TRIM8
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
TRIP10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.898779e-03	ci left: 9.881795e-01	ci right 9.921271e-01	k: 9903	n:10000
Cons ci ratio: 6.514930e-02	ci left: 2.570620e-01	ci right 2.744747e-01	k: 2657	n:10000
KS ci ratio: 3.329228e-02	ci left: 5.711569e-01	ci right 5.905960e-01	k: 5809	n:10000
TRIP10   10000 perm   1 sec   (7316 perm/sec)   p_kst 5.809000e-01   p_cons 2.657000e-01   p_joint 9.903000e-01

Outputting figure to mutsig2_images.part000000000182/TRIP10.2_1694_10000_0.5809_0.2657_0.9903.png
                gene_name: TRIP10
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 85 percent done.
TRIP13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.039952e-01	ci left: 1.178937e-01	ci right 1.309260e-01	k: 1243	n:10000
KS ci ratio: 4.014615e-02	ci left: 4.781577e-01	ci right 4.978493e-01	k: 4880	n:10000
TRIP13   10000 perm   1 sec   (7475 perm/sec)   p_kst 4.880000e-01   p_cons 1.243000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 7.341911e-02	ci left: 1.201511e-01	ci right 1.293583e-01	k: 2494	n:20000
KS ci ratio: 2.793073e-02	ci left: 4.891967e-01	ci right 5.031045e-01	k: 9923	n:20000
TRIP13   20000 perm   3 sec   (6626 perm/sec)   p_kst 4.961500e-01   p_cons 1.247000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000182/TRIP13.2_1355_20000_0.49615_0.1247_1.png
                gene_name: TRIP13
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
TRMT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.556441e-03	ci left: 9.503353e-01	ci right 9.585973e-01	k: 9546	n:10000
KS ci ratio: 8.377591e-03	ci left: 9.522126e-01	ci right 9.603189e-01	k: 9564	n:10000
TRMT1   10000 perm   1 sec   (7002 perm/sec)   p_kst 9.564000e-01   p_cons 9.546000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000182/TRMT1.2_2044_10000_0.9564_0.9546_1.png
                gene_name: TRMT1
               theta_stop: 0.0086 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
TRMT2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.967958e-02	ci left: 2.923162e-01	ci right 3.103997e-01	k: 3013	n:10000
Cons ci ratio: 1.345808e-01	ci left: 7.291428e-02	ci right 8.353297e-02	k: 781	n:10000
KS ci ratio: 7.452509e-03	ci left: 9.614198e-01	ci right 9.687060e-01	k: 9652	n:10000
TRMT2B   10000 perm   1 sec   (7216 perm/sec)   p_kst 9.652000e-01   p_cons 7.810000e-02   p_joint 3.013000e-01

Joint ci ratio: 7.117140e-02	ci left: 1.269929e-01	ci right 1.364144e-01	k: 2633	n:20000
Cons ci ratio: 9.583125e-02	ci left: 7.348866e-02	ci right 8.093481e-02	k: 1543	n:20000
KS ci ratio: 5.266474e-03	ci left: 9.625664e-01	ci right 9.676972e-01	k: 19304	n:20000
TRMT2B   20000 perm   3 sec   (6379 perm/sec)   p_kst 9.652000e-01   p_cons 7.715000e-02   p_joint 1.316500e-01

Outputting figure to mutsig2_images.part000000000182/TRMT2B.2_1563_20000_0.9652_0.07715_0.13165.png
                gene_name: TRMT2B
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.077 
      ci_cons_bounds_left: 0.073 
     ci_cons_bounds_right: 0.081 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 90 percent done.
TRPC6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.923248e-02	ci left: 3.783335e-01	ci right 3.975319e-01	k: 3879	n:10000
KS ci ratio: 2.240477e-01	ci left: 2.636581e-02	ci right 3.311184e-02	k: 296	n:10000
TRPC6   10000 perm   2 sec   (6438 perm/sec)   p_kst 2.960000e-02   p_cons 3.879000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 3.471729e-02	ci left: 3.824841e-01	ci right 3.960481e-01	k: 7785	n:20000
KS ci ratio: 1.609604e-01	ci left: 2.647782e-02	ci right 3.116050e-02	k: 575	n:20000
TRPC6   20000 perm   3 sec   (5741 perm/sec)   p_kst 2.875000e-02   p_cons 3.892500e-01   p_joint 1

Joint ci ratio: 3.842440e-02	ci left: 2.525922e-01	ci right 2.625215e-01	k: 7726	n:30000
Cons ci ratio: 2.975307e-02	ci left: 3.610440e-01	ci right 3.719819e-01	k: 10995	n:30000
KS ci ratio: 1.316602e-01	ci left: 2.680750e-02	ci right 3.061784e-02	k: 860	n:30000
TRPC6   30000 perm   5 sec   (5496 perm/sec)   p_kst 2.866667e-02   p_cons 3.665000e-01   p_joint 2.575333e-01

Joint ci ratio: 8.231752e-02	ci left: 5.143730e-02	ci right 5.587778e-02	k: 2145	n:40000
Cons ci ratio: 2.572164e-02	ci left: 3.625980e-01	ci right 3.720713e-01	k: 14693	n:40000
KS ci ratio: 1.154265e-01	ci left: 2.640513e-02	ci right 2.966387e-02	k: 1120	n:40000
TRPC6   40000 perm   8 sec   (5087 perm/sec)   p_kst 2.800000e-02   p_cons 3.673250e-01   p_joint 5.362500e-02

Joint ci ratio: 4.595831e-02	ci left: 1.240931e-01	ci right 1.299502e-01	k: 6350	n:50000
Cons ci ratio: 2.301454e-02	ci left: 3.629327e-01	ci right 3.714027e-01	k: 18358	n:50000
KS ci ratio: 1.038621e-01	ci left: 2.625950e-02	ci right 2.915568e-02	k: 1384	n:50000
TRPC6   50000 perm   10 sec   (5023 perm/sec)   p_kst 2.768000e-02   p_cons 3.671600e-01   p_joint 1.270000e-01

Joint ci ratio: 4.204638e-02	ci left: 1.238665e-01	ci right 1.292030e-01	k: 7591	n:60000
Cons ci ratio: 2.098281e-02	ci left: 3.638899e-01	ci right 3.716229e-01	k: 22065	n:60000
KS ci ratio: 9.531541e-02	ci left: 2.610835e-02	ci right 2.873763e-02	k: 1644	n:60000
TRPC6   60000 perm   12 sec   (4942 perm/sec)   p_kst 2.740000e-02   p_cons 3.677500e-01   p_joint 1.265167e-01

Outputting figure to mutsig2_images.part000000000182/TRPC6.2_2848_60000_0.0274_0.36775_0.12652.png
                gene_name: TRPC6
               theta_stop: 0.095 
                    nperm: 60000 
                     p_ks: 0.027 
        ci_ks_bounds_left: 0.026 
       ci_ks_bounds_right: 0.029 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 92 percent done.
TRUB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.753709e-03	ci left: 9.830684e-01	ci right 9.878427e-01	k: 9856	n:10000
Cons ci ratio: 4.401905e-02	ci left: 4.324339e-01	ci right 4.519998e-01	k: 4422	n:10000
KS ci ratio: 5.879861e-02	ci left: 2.985619e-01	ci right 3.167503e-01	k: 3076	n:10000
TRUB1   10000 perm   1 sec   (7224 perm/sec)   p_kst 3.076000e-01   p_cons 4.422000e-01   p_joint 9.856000e-01

Outputting figure to mutsig2_images.part000000000182/TRUB1.2_1082_10000_0.3076_0.4422_0.9856.png
                gene_name: TRUB1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 94 percent done.
TSC22D1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.832462e-02	ci left: 1.923954e-01	ci right 2.081796e-01	k: 2002	n:10000
Cons ci ratio: 7.825135e-02	ci left: 1.926909e-01	ci right 2.084839e-01	k: 2005	n:10000
KS ci ratio: 2.944204e-02	ci left: 6.297987e-01	ci right 6.487201e-01	k: 6393	n:10000
TSC22D1   10000 perm   2 sec   (6320 perm/sec)   p_kst 6.393000e-01   p_cons 2.005000e-01   p_joint 2.002000e-01

Outputting figure to mutsig2_images.part000000000182/TSC22D1.2_3363_10000_0.6393_0.2005_0.2002.png
                gene_name: TSC22D1
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 96 percent done.
TSGA10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.119938e-02	ci left: 9.192503e-01	ci right 9.297008e-01	k: 9246	n:10000
KS ci ratio: 2.466281e-02	ci left: 7.074534e-01	ci right 7.252204e-01	k: 7164	n:10000
TSGA10   10000 perm   1 sec   (6967 perm/sec)   p_kst 7.164000e-01   p_cons 9.246000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000182/TSGA10.2_2161_10000_0.7164_0.9246_1.png
                gene_name: TSGA10
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
TSGA14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.591382e-02	ci left: 5.337760e-01	ci right 5.533986e-01	k: 5436	n:10000
Cons ci ratio: 5.928515e-02	ci left: 2.950918e-01	ci right 3.132224e-01	k: 3041	n:10000
KS ci ratio: 4.466723e-02	ci left: 4.252535e-01	ci right 4.447844e-01	k: 4350	n:10000
TSGA14   10000 perm   1 sec   (7519 perm/sec)   p_kst 4.350000e-01   p_cons 3.041000e-01   p_joint 5.436000e-01

Outputting figure to mutsig2_images.part000000000182/TSGA14.2_1166_10000_0.435_0.3041_0.5436.png
                gene_name: TSGA14
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000182
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 182 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1712>
Subject: Job 8004664: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1712>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000183> was used as the working directory.
Started at Sun Nov 11 15:23:25 2012
Results reported at Sun Nov 11 15:29:57 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000183.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000183.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 183  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000183.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    424.27 sec.
    Max Memory :      4606 MB
    Max Swap   :      7105 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
183
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 183
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 183: processing genes 16467 - 16556
Calculating significance of each gene.
Using projection method.
16467	TSHR	2.575133e-01
16468	TSHZ1	3.044635e-01
16469	TSHZ2	8.243824e-01
16470	TSHZ3	3.157282e-02
16471	TSKS	3.294832e-01
16472	TSKU	7.882769e-01
16473	TSLP	1
16474	TSN	3.698604e-01
16475	TSNARE1	6.632067e-01
16476	TSNAX	1
16477	TSNAXIP1	8.667190e-01
16478	TSPAN1	4.587368e-01
16479	TSPAN10	6.871592e-01
16480	TSPAN11	6.545490e-01
16481	TSPAN12	1
16482	TSPAN13	1
16483	TSPAN14	6.370866e-01
16484	TSPAN15	5.382880e-01
16485	TSPAN16	1
16486	TSPAN17	3.287847e-01
16487	TSPAN18	6.448439e-01
16488	TSPAN19	1
16489	TSPAN2	1
16490	TSPAN3	3.119970e-01
16491	TSPAN31	9.840359e-02
16492	TSPAN32	1
16493	TSPAN33	1
16494	TSPAN4	1
16495	TSPAN5	3.557950e-01
16496	TSPAN6	1
16497	TSPAN7	1
16498	TSPAN8	3.162238e-01
16499	TSPAN9	4.329387e-01
16500	TSPO	1
16501	TSPO2	1.936759e-02
16502	TSPY1	1
16503	TSPY2	2.851113e-02
16504	TSPYL1	8.289135e-01
16505	TSPYL2	8.499364e-01
16506	TSPYL4	1
16507	TSPYL5	7.702466e-01
16508	TSPYL6	7.303270e-01
16509	TSR1	1
16510	TSR2	1
16511	TSSC1	2.480874e-01
16512	TSSC4	1.257241e-01
16513	TSSK1B	1
16514	TSSK2	3.231167e-01
16515	TSSK3	1
16516	TSSK4	5.530204e-01
16517	TSSK6	1.998946e-02
16518	TST	4.842534e-01
16519	TSTA3	1
16520	TSTD2	7.484752e-01
16521	TTBK1	5.979126e-01
16522	TTBK2	7.984704e-01
16523	TTC1	1
16524	TTC12	1
16525	TTC13	7.002815e-01
16526	TTC14	4.618250e-01
16527	TTC15	6.127002e-01
16528	TTC16	9.801992e-01
16529	TTC17	1.679033e-01
16530	TTC18	9.692672e-01
16531	TTC19	2.116132e-01
16532	TTC21A	5.113072e-01
16533	TTC21B	1.739678e-02
16534	TTC22	1
16535	TTC23	8.186232e-01
16536	TTC23L	3.053653e-01
16537	TTC24	1.368788e-01
16538	TTC25	8.422763e-01
16539	TTC26	4.336975e-01
16540	TTC27	1.674021e-01
16541	TTC29	1
16542	TTC3	9.993233e-01
16543	TTC30A	1
16544	TTC30B	5.914131e-01
16545	TTC31	1
16546	TTC32	1
16547	TTC33	4.590588e-01
16548	TTC35	5.010272e-01
16549	TTC36	1
16550	TTC37	9.960373e-01
16551	TTC38	7.142638e-01
16552	TTC39A	6.473375e-01
16553	TTC39B	5.545601e-01
16554	TTC39C	1
16555	TTC4	5.296400e-01
16556	TTC5	5.354614e-01
Done

Running MutSig 2:
Scatter job 183: processing genes 16467 - 16556
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
TSHZ3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.178706e-02	ci left: 1.791047e-01	ci right 1.944782e-01	k: 1867	n:10000
Cons ci ratio: 4.908768e-02	ci left: 3.797268e-01	ci right 3.989377e-01	k: 3893	n:10000
KS ci ratio: 8.403543e-02	ci left: 1.711374e-01	ci right 1.862502e-01	k: 1786	n:10000
TSHZ3   10000 perm   2 sec   (4380 perm/sec)   p_kst 1.786000e-01   p_cons 3.893000e-01   p_joint 1.867000e-01

Outputting figure to mutsig2_images.part000000000183/TSHZ3.16_3254_10000_0.1786_0.3893_0.1867.png
                gene_name: TSHZ3
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 3 percent done.
TTC21B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.610433e-02	ci left: 4.098026e-01	ci right 4.292443e-01	k: 4195	n:10000
Cons ci ratio: 9.530083e-02	ci left: 1.377611e-01	ci right 1.516466e-01	k: 1446	n:10000
KS ci ratio: 7.009630e-03	ci left: 9.655188e-01	ci right 9.724045e-01	k: 9691	n:10000
TTC21B   10000 perm   2 sec   (4291 perm/sec)   p_kst 9.691000e-01   p_cons 1.446000e-01   p_joint 4.195000e-01

Outputting figure to mutsig2_images.part000000000183/TTC21B.11_4067_10000_0.9691_0.1446_0.4195.png
                gene_name: TTC21B
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 6 percent done.
TSHZ2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.243911e-02	ci left: 2.182281e-01	ci right 2.347315e-01	k: 2264	n:10000
Cons ci ratio: 1.461584e-01	ci left: 6.217631e-02	ci right 7.207768e-02	k: 670	n:10000
KS ci ratio: 1.417551e-02	ci left: 8.779709e-01	ci right 8.906043e-01	k: 8844	n:10000
TSHZ2   10000 perm   2 sec   (4912 perm/sec)   p_kst 8.844000e-01   p_cons 6.700000e-02   p_joint 2.264000e-01

Joint ci ratio: 5.124466e-02	ci left: 2.205160e-01	ci right 2.321637e-01	k: 4526	n:20000
Cons ci ratio: 9.797943e-02	ci left: 7.045809e-02	ci right 7.776631e-02	k: 1481	n:20000
KS ci ratio: 8.845711e-03	ci left: 9.035021e-01	ci right 9.115790e-01	k: 18152	n:20000
TSHZ2   20000 perm   4 sec   (4469 perm/sec)   p_kst 9.076000e-01   p_cons 7.405000e-02   p_joint 2.263000e-01

Outputting figure to mutsig2_images.part000000000183/TSHZ2.10_3113_20000_0.9076_0.07405_0.2263.png
                gene_name: TSHZ2
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.074 
      ci_cons_bounds_left: 0.070 
     ci_cons_bounds_right: 0.078 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 9 percent done.
TTC14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.669516e-02	ci left: 5.230630e-01	ci right 5.427178e-01	k: 5329	n:10000
Cons ci ratio: 4.856532e-02	ci left: 3.848032e-01	ci right 4.040584e-01	k: 3944	n:10000
KS ci ratio: 2.897772e-02	ci left: 6.371392e-01	ci right 6.559753e-01	k: 6466	n:10000
TTC14   10000 perm   2 sec   (5100 perm/sec)   p_kst 6.466000e-01   p_cons 3.944000e-01   p_joint 5.329000e-01

Outputting figure to mutsig2_images.part000000000183/TTC14.9_2391_10000_0.6466_0.3944_0.5329.png
                gene_name: TTC14
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 11 percent done.
TTC17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.325328e-02	ci left: 7.309807e-01	ci right 7.482795e-01	k: 7397	n:10000
Cons ci ratio: 2.876252e-02	ci left: 6.405589e-01	ci right 6.593536e-01	k: 6500	n:10000
KS ci ratio: 4.231157e-02	ci left: 4.519911e-01	ci right 4.716311e-01	k: 4618	n:10000
TTC17   10000 perm   2 sec   (5013 perm/sec)   p_kst 4.618000e-01   p_cons 6.500000e-01   p_joint 7.397000e-01

Outputting figure to mutsig2_images.part000000000183/TTC17.9_3522_10000_0.4618_0.65_0.7397.png
                gene_name: TTC17
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 14 percent done.
TSHZ1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.332702e-02	ci left: 3.413419e-01	ci right 3.601452e-01	k: 3507	n:10000
Cons ci ratio: 1.053554e-02	ci left: 9.276122e-01	ci right 9.375340e-01	k: 9327	n:10000
KS ci ratio: 8.670614e-02	ci left: 1.622916e-01	ci right 1.771013e-01	k: 1696	n:10000
TSHZ1   10000 perm   2 sec   (5203 perm/sec)   p_kst 1.696000e-01   p_cons 9.327000e-01   p_joint 3.507000e-01

Outputting figure to mutsig2_images.part000000000183/TSHZ1.6_3103_10000_0.1696_0.9327_0.3507.png
                gene_name: TSHZ1
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 17 percent done.
TTC21A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.543881e-02	ci left: 5.403863e-01	ci right 5.599845e-01	k: 5502	n:10000
Cons ci ratio: 5.885386e-02	ci left: 2.981652e-01	ci right 3.163472e-01	k: 3072	n:10000
KS ci ratio: 2.129120e-02	ci left: 7.638510e-01	ci right 7.803902e-01	k: 7722	n:10000
TTC21A   10000 perm   2 sec   (4903 perm/sec)   p_kst 7.722000e-01   p_cons 3.072000e-01   p_joint 5.502000e-01

Outputting figure to mutsig2_images.part000000000183/TTC21A.6_4082_10000_0.7722_0.3072_0.5502.png
                gene_name: TTC21A
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 20 percent done.
TSHR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.965508e-03	ci left: 9.816675e-01	ci right 9.866446e-01	k: 9843	n:10000
KS ci ratio: 1.048516e-02	ci left: 9.282324e-01	ci right 9.381134e-01	k: 9333	n:10000
TSHR   10000 perm   2 sec   (5152 perm/sec)   p_kst 9.333000e-01   p_cons 9.843000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000183/TSHR.5_2472_10000_0.9333_0.9843_1.png
                gene_name: TSHR
               theta_stop: 0.010 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 23 percent done.
TSSK6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.474977e-02	ci left: 5.501045e-01	ci right 5.696606e-01	k: 5599	n:10000
Cons ci ratio: 1.475129e-02	ci left: 8.693806e-01	ci right 8.823995e-01	k: 8760	n:10000
KS ci ratio: 6.158970e-02	ci left: 2.793356e-01	ci right 2.971879e-01	k: 2882	n:10000
TSSK6   10000 perm   2 sec   (5939 perm/sec)   p_kst 2.882000e-01   p_cons 8.760000e-01   p_joint 5.599000e-01

Outputting figure to mutsig2_images.part000000000183/TSSK6.5_826_10000_0.2882_0.876_0.5599.png
                gene_name: TSSK6
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 26 percent done.
TTC27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.491770e-02	ci left: 1.387411e-01	ci right 1.526660e-01	k: 1456	n:10000
Cons ci ratio: 1.893355e-01	ci left: 3.719780e-02	ci right 4.507236e-02	k: 410	n:10000
KS ci ratio: 2.673487e-02	ci left: 6.732741e-01	ci right 6.916195e-01	k: 6825	n:10000
TTC27   10000 perm   2 sec   (5410 perm/sec)   p_kst 6.825000e-01   p_cons 4.100000e-02   p_joint 1.456000e-01

Joint ci ratio: 6.811993e-02	ci left: 1.371898e-01	ci right 1.469145e-01	k: 2840	n:20000
Cons ci ratio: 1.285902e-01	ci left: 4.153824e-02	ci right 4.729516e-02	k: 887	n:20000
KS ci ratio: 1.902289e-02	ci left: 6.732832e-01	ci right 6.862645e-01	k: 13596	n:20000
TTC27   20000 perm   4 sec   (4631 perm/sec)   p_kst 6.798000e-01   p_cons 4.435000e-02   p_joint 1.420000e-01

Joint ci ratio: 4.528747e-02	ci left: 1.952879e-01	ci right 2.043703e-01	k: 5994	n:30000
Cons ci ratio: 1.071591e-01	ci left: 4.040740e-02	ci right 4.501502e-02	k: 1280	n:30000
KS ci ratio: 1.545743e-02	ci left: 6.765957e-01	ci right 6.871691e-01	k: 20457	n:30000
TTC27   30000 perm   7 sec   (4513 perm/sec)   p_kst 6.819000e-01   p_cons 4.266667e-02   p_joint 1.998000e-01

Joint ci ratio: 4.965530e-02	ci left: 1.314426e-01	ci right 1.381605e-01	k: 5391	n:40000
Cons ci ratio: 9.586298e-02	ci left: 3.819829e-02	ci right 4.206884e-02	k: 1604	n:40000
KS ci ratio: 1.333187e-02	ci left: 6.790920e-01	ci right 6.882314e-01	k: 27347	n:40000
TTC27   40000 perm   9 sec   (4406 perm/sec)   p_kst 6.836750e-01   p_cons 4.010000e-02   p_joint 1.347750e-01

Outputting figure to mutsig2_images.part000000000183/TTC27.5_2612_40000_0.68368_0.0401_0.13478.png
                gene_name: TTC27
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.040 
      ci_cons_bounds_left: 0.038 
     ci_cons_bounds_right: 0.042 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 29 percent done.
TSKS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.957012e-02	ci left: 7.925305e-01	ci right 8.082941e-01	k: 8005	n:10000
Cons ci ratio: 5.338560e-02	ci left: 3.408451e-01	ci right 3.596422e-01	k: 3502	n:10000
KS ci ratio: 1.311400e-02	ci left: 8.933376e-01	ci right 9.052286e-01	k: 8994	n:10000
TSKS   10000 perm   2 sec   (5719 perm/sec)   p_kst 8.994000e-01   p_cons 3.502000e-01   p_joint 8.005000e-01

Outputting figure to mutsig2_images.part000000000183/TSKS.4_1823_10000_0.8994_0.3502_0.8005.png
                gene_name: TSKS
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 31 percent done.
TTBK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.021896e-02	ci left: 6.176367e-01	ci right 6.366892e-01	k: 6272	n:10000
Cons ci ratio: 9.390706e-03	ci left: 9.411809e-01	ci right 9.501572e-01	k: 9458	n:10000
KS ci ratio: 5.470120e-02	ci left: 3.299187e-01	ci right 3.485750e-01	k: 3392	n:10000
TTBK1   10000 perm   2 sec   (4919 perm/sec)   p_kst 3.392000e-01   p_cons 9.458000e-01   p_joint 6.272000e-01

Outputting figure to mutsig2_images.part000000000183/TTBK1.4_4022_10000_0.3392_0.9458_0.6272.png
                gene_name: TTBK1
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 34 percent done.
TTBK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.773191e-02	ci left: 3.930670e-01	ci right 4.123897e-01	k: 4027	n:10000
Cons ci ratio: 2.249902e-02	ci left: 7.436154e-01	ci right 7.606374e-01	k: 7522	n:10000
KS ci ratio: 9.888455e-02	ci left: 1.290445e-01	ci right 1.425684e-01	k: 1357	n:10000
TTBK2   10000 perm   2 sec   (5355 perm/sec)   p_kst 1.357000e-01   p_cons 7.522000e-01   p_joint 4.027000e-01

Outputting figure to mutsig2_images.part000000000183/TTBK2.4_3791_10000_0.1357_0.7522_0.4027.png
                gene_name: TTBK2
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 37 percent done.
TTC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.015033e-02	ci left: 7.828967e-01	ci right 7.989335e-01	k: 7910	n:10000
Cons ci ratio: 4.507844e-02	ci left: 4.207667e-01	ci right 4.402738e-01	k: 4305	n:10000
KS ci ratio: 2.067928e-02	ci left: 7.740800e-01	ci right 7.903553e-01	k: 7823	n:10000
TTC3   10000 perm   2 sec   (4300 perm/sec)   p_kst 7.823000e-01   p_cons 4.305000e-01   p_joint 7.910000e-01

Outputting figure to mutsig2_images.part000000000183/TTC3.4_6258_10000_0.7823_0.4305_0.791.png
                gene_name: TTC3
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 40 percent done.
TSPO2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.939054e-02	ci left: 4.876522e-01	ci right 5.073492e-01	k: 4975	n:10000
Cons ci ratio: 8.487256e-03	ci left: 9.510652e-01	ci right 9.592670e-01	k: 9553	n:10000
KS ci ratio: 5.970793e-02	ci left: 2.921179e-01	ci right 3.101981e-01	k: 3011	n:10000
TSPO2   10000 perm   1 sec   (6786 perm/sec)   p_kst 3.011000e-01   p_cons 9.553000e-01   p_joint 4.975000e-01

Outputting figure to mutsig2_images.part000000000183/TSPO2.3_525_10000_0.3011_0.9553_0.4975.png
                gene_name: TSPO2
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 43 percent done.
TSSC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.965007e-02	ci left: 1.272828e-01	ci right 1.407312e-01	k: 1339	n:10000
Cons ci ratio: 1.825522e-02	ci left: 8.141562e-01	ci right 8.292559e-01	k: 8218	n:10000
KS ci ratio: 1.260329e-01	ci left: 8.261521e-02	ci right 9.382602e-02	k: 881	n:10000
TSSC1   10000 perm   2 sec   (6222 perm/sec)   p_kst 8.810000e-02   p_cons 8.218000e-01   p_joint 1.339000e-01

Joint ci ratio: 5.905103e-02	ci left: 1.751915e-01	ci right 1.859015e-01	k: 3610	n:20000
Cons ci ratio: 1.296518e-02	ci left: 8.151098e-01	ci right 8.257968e-01	k: 16410	n:20000
KS ci ratio: 8.792318e-02	ci left: 8.641161e-02	ci right 9.440794e-02	k: 1807	n:20000
TSSC1   20000 perm   4 sec   (5562 perm/sec)   p_kst 9.035000e-02   p_cons 8.205000e-01   p_joint 1.805000e-01

Outputting figure to mutsig2_images.part000000000183/TSSC1.3_1200_20000_0.09035_0.8205_0.1805.png
                gene_name: TSSC1
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.090 
        ci_ks_bounds_left: 0.086 
       ci_ks_bounds_right: 0.094 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 46 percent done.
TSSC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.708612e-01	ci left: 4.571402e-02	ci right 5.435051e-02	k: 499	n:10000
Cons ci ratio: 1.074258e-01	ci left: 1.111530e-01	ci right 1.238707e-01	k: 1174	n:10000
KS ci ratio: 1.173999e-01	ci left: 9.438193e-02	ci right 1.062521e-01	k: 1002	n:10000
TSSC4   10000 perm   2 sec   (6300 perm/sec)   p_kst 1.002000e-01   p_cons 1.174000e-01   p_joint 4.990000e-02

Joint ci ratio: 7.268865e-02	ci left: 1.223163e-01	ci right 1.315924e-01	k: 2538	n:20000
Cons ci ratio: 7.648011e-02	ci left: 1.116422e-01	ci right 1.205697e-01	k: 2321	n:20000
KS ci ratio: 8.582577e-02	ci left: 9.038200e-02	ci right 9.853634e-02	k: 1888	n:20000
TSSC4   20000 perm   4 sec   (5643 perm/sec)   p_kst 9.440000e-02   p_cons 1.160500e-01   p_joint 1.269000e-01

Outputting figure to mutsig2_images.part000000000183/TSSC4.3_994_20000_0.0944_0.11605_0.1269.png
                gene_name: TSSC4
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.094 
        ci_ks_bounds_left: 0.090 
       ci_ks_bounds_right: 0.099 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 49 percent done.
TTC13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.111580e-01	ci left: 1.044194e-01	ci right 1.168085e-01	k: 1105	n:10000
Cons ci ratio: 7.172305e-02	ci left: 2.216827e-01	ci right 2.382749e-01	k: 2299	n:10000
KS ci ratio: 2.206259e-01	ci left: 2.721699e-02	ci right 3.406005e-02	k: 305	n:10000
TTC13   10000 perm   2 sec   (5733 perm/sec)   p_kst 3.050000e-02   p_cons 2.299000e-01   p_joint 1.105000e-01

Joint ci ratio: 1.062227e-01	ci left: 6.035399e-02	ci right 6.717352e-02	k: 1274	n:20000
Cons ci ratio: 5.026244e-02	ci left: 2.273040e-01	ci right 2.390737e-01	k: 4663	n:20000
KS ci ratio: 1.562733e-01	ci left: 2.811217e-02	ci right 3.292560e-02	k: 609	n:20000
TTC13   20000 perm   4 sec   (5155 perm/sec)   p_kst 3.045000e-02   p_cons 2.331500e-01   p_joint 6.370000e-02

Joint ci ratio: 1.228966e-01	ci left: 3.078084e-02	ci right 3.484363e-02	k: 983	n:30000
Cons ci ratio: 4.111973e-02	ci left: 2.276962e-01	ci right 2.372890e-01	k: 6974	n:30000
KS ci ratio: 1.278863e-01	ci left: 2.842155e-02	ci right 3.233676e-02	k: 910	n:30000
TTC13   30000 perm   6 sec   (4924 perm/sec)   p_kst 3.033333e-02   p_cons 2.324667e-01   p_joint 3.276667e-02

Joint ci ratio: 1.054798e-01	ci left: 3.161190e-02	ci right 3.515627e-02	k: 1334	n:40000
Cons ci ratio: 3.574100e-02	ci left: 2.270507e-01	ci right 2.353384e-01	k: 9247	n:40000
KS ci ratio: 1.100851e-01	ci left: 2.903113e-02	ci right 3.243744e-02	k: 1228	n:40000
TTC13   40000 perm   8 sec   (4777 perm/sec)   p_kst 3.070000e-02   p_cons 2.311750e-01   p_joint 3.335000e-02

Joint ci ratio: 9.390127e-02	ci left: 3.209629e-02	ci right 3.527815e-02	k: 1683	n:50000
Cons ci ratio: 3.191568e-02	ci left: 2.280671e-01	ci right 2.354841e-01	k: 11588	n:50000
KS ci ratio: 9.797911e-02	ci left: 2.949811e-02	ci right 3.255666e-02	k: 1550	n:50000
TTC13   50000 perm   11 sec   (4659 perm/sec)   p_kst 3.100000e-02   p_cons 2.317600e-01   p_joint 3.366000e-02

Outputting figure to mutsig2_images.part000000000183/TTC13.3_2675_50000_0.031_0.23176_0.03366.png
                gene_name: TTC13
               theta_stop: 0.098 
                    nperm: 50000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.034 
     ci_joint_bounds_left: 0.032 
    ci_joint_bounds_right: 0.035 

Current progress: 51 percent done.
TTC24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.039576e-02	ci left: 2.873607e-01	ci right 3.053581e-01	k: 2963	n:10000
Cons ci ratio: 3.245844e-02	ci left: 5.834959e-01	ci right 6.028498e-01	k: 5932	n:10000
KS ci ratio: 9.100344e-02	ci left: 1.493316e-01	ci right 1.636692e-01	k: 1564	n:10000
TTC24   10000 perm   2 sec   (6085 perm/sec)   p_kst 1.564000e-01   p_cons 5.932000e-01   p_joint 2.963000e-01

Outputting figure to mutsig2_images.part000000000183/TTC24.3_1789_10000_0.1564_0.5932_0.2963.png
                gene_name: TTC24
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 54 percent done.
TTC26
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.347034e-02	ci left: 5.685494e-01	ci right 5.880049e-01	k: 5783	n:10000
KS ci ratio: 5.612854e-03	ci left: 9.770621e-01	ci right 9.826535e-01	k: 9800	n:10000
TTC26   10000 perm   2 sec   (5383 perm/sec)   p_kst 9.800000e-01   p_cons 5.783000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000183/TTC26.3_1737_10000_0.98_0.5783_1.png
                gene_name: TTC26
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 57 percent done.
TTC39B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.829190e-02	ci left: 3.022309e-01	ci right 3.204791e-01	k: 3113	n:10000
Cons ci ratio: 1.219088e-01	ci left: 8.796014e-02	ci right 9.947780e-02	k: 936	n:10000
KS ci ratio: 5.300083e-02	ci left: 3.441241e-01	ci right 3.629613e-01	k: 3535	n:10000
TTC39B   10000 perm   2 sec   (5465 perm/sec)   p_kst 3.535000e-01   p_cons 9.360000e-02   p_joint 3.113000e-01

Joint ci ratio: 4.728455e-02	ci left: 2.496648e-01	ci right 2.618063e-01	k: 5114	n:20000
Cons ci ratio: 8.498378e-02	ci left: 9.204927e-02	ci right 1.002686e-01	k: 1922	n:20000
KS ci ratio: 3.791569e-02	ci left: 3.416448e-01	ci right 3.548994e-01	k: 6965	n:20000
TTC39B   20000 perm   4 sec   (4997 perm/sec)   p_kst 3.482500e-01   p_cons 9.610000e-02   p_joint 2.557000e-01

Outputting figure to mutsig2_images.part000000000183/TTC39B.3_2150_20000_0.34825_0.0961_0.2557.png
                gene_name: TTC39B
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.096 
      ci_cons_bounds_left: 0.092 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 60 percent done.
TSNARE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.677804e-02	ci left: 8.379602e-01	ci right 8.522382e-01	k: 8452	n:10000
Cons ci ratio: 2.939738e-02	ci left: 6.305025e-01	ci right 6.494159e-01	k: 6400	n:10000
KS ci ratio: 1.866511e-02	ci left: 8.074513e-01	ci right 8.227647e-01	k: 8152	n:10000
TSNARE1   10000 perm   2 sec   (4645 perm/sec)   p_kst 8.152000e-01   p_cons 6.400000e-01   p_joint 8.452000e-01

Outputting figure to mutsig2_images.part000000000183/TSNARE1.2_1590_10000_0.8152_0.64_0.8452.png
                gene_name: TSNARE1
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 63 percent done.
TSPAN17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.811321e-02	ci left: 2.402520e-01	ci right 2.572946e-01	k: 2487	n:10000
Cons ci ratio: 4.652901e-03	ci left: 9.837165e-01	ci right 9.883940e-01	k: 9862	n:10000
KS ci ratio: 8.346729e-02	ci left: 1.731041e-01	ci right 1.882824e-01	k: 1806	n:10000
TSPAN17   10000 perm   2 sec   (6461 perm/sec)   p_kst 1.806000e-01   p_cons 9.862000e-01   p_joint 2.487000e-01

Outputting figure to mutsig2_images.part000000000183/TSPAN17.2_1035_10000_0.1806_0.9862_0.2487.png
                gene_name: TSPAN17
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 66 percent done.
TSPAN31
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.246706e-02	ci left: 9.023712e-01	ci right 9.137898e-01	k: 9082	n:10000
Cons ci ratio: 4.160355e-02	ci left: 4.603775e-01	ci right 4.800399e-01	k: 4702	n:10000
KS ci ratio: 1.728785e-02	ci left: 8.298162e-01	ci right 8.443869e-01	k: 8372	n:10000
TSPAN31   10000 perm   1 sec   (6942 perm/sec)   p_kst 8.372000e-01   p_cons 4.702000e-01   p_joint 9.082000e-01

Outputting figure to mutsig2_images.part000000000183/TSPAN31.2_657_10000_0.8372_0.4702_0.9082.png
                gene_name: TSPAN31
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 69 percent done.
TSPAN5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.260762e-02	ci left: 7.417955e-01	ci right 7.588585e-01	k: 7504	n:10000
KS ci ratio: 7.293884e-02	ci left: 2.158598e-01	ci right 2.323013e-01	k: 2240	n:10000
TSPAN5   10000 perm   1 sec   (7034 perm/sec)   p_kst 2.240000e-01   p_cons 7.504000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000183/TSPAN5.2_839_10000_0.224_0.7504_1.png
                gene_name: TSPAN5
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
TSPY2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.856994e-02	ci left: 1.914104e-01	ci right 2.071652e-01	k: 1992	n:10000
KS ci ratio: 1.655280e-01	ci left: 4.868974e-02	ci right 5.757286e-02	k: 530	n:10000
TSPY2   10000 perm   1 sec   (6806 perm/sec)   p_kst 5.300000e-02   p_cons 1.992000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 5.524664e-02	ci left: 1.955143e-01	ci right 2.066728e-01	k: 4021	n:20000
KS ci ratio: 1.169904e-01	ci left: 5.003249e-02	ci right 5.629822e-02	k: 1062	n:20000
TSPY2   20000 perm   3 sec   (6011 perm/sec)   p_kst 5.310000e-02   p_cons 2.010500e-01   p_joint 1

Joint ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
Cons ci ratio: 4.491327e-02	ci left: 1.979318e-01	ci right 2.070592e-01	k: 6074	n:30000
KS ci ratio: 9.519244e-02	ci left: 5.094770e-02	ci right 5.607254e-02	k: 1604	n:30000
TSPY2   30000 perm   5 sec   (5691 perm/sec)   p_kst 5.346667e-02   p_cons 2.024667e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000183/TSPY2.2_951_30000_0.053467_0.20247_1.png
                gene_name: TSPY2
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.053 
        ci_ks_bounds_left: 0.051 
       ci_ks_bounds_right: 0.056 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 74 percent done.
TSSK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.662888e-02	ci left: 5.239639e-01	ci right 5.436164e-01	k: 5338	n:10000
Cons ci ratio: 4.281715e-02	ci left: 4.461024e-01	ci right 4.657233e-01	k: 4559	n:10000
KS ci ratio: 4.312913e-02	ci left: 4.425100e-01	ci right 4.621178e-01	k: 4523	n:10000
TSSK2   10000 perm   1 sec   (6668 perm/sec)   p_kst 4.523000e-01   p_cons 4.559000e-01   p_joint 5.338000e-01

Outputting figure to mutsig2_images.part000000000183/TSSK2.2_1081_10000_0.4523_0.4559_0.5338.png
                gene_name: TSSK2
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 77 percent done.
TTC15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.331581e-02	ci left: 8.904663e-01	ci right 9.025016e-01	k: 8966	n:10000
Cons ci ratio: 6.849801e-02	ci left: 2.381767e-01	ci right 2.551711e-01	k: 2466	n:10000
KS ci ratio: 8.639973e-02	ci left: 1.632741e-01	ci right 1.781182e-01	k: 1706	n:10000
TTC15   10000 perm   2 sec   (5326 perm/sec)   p_kst 1.706000e-01   p_cons 2.466000e-01   p_joint 8.966000e-01

Outputting figure to mutsig2_images.part000000000183/TTC15.2_2252_10000_0.1706_0.2466_0.8966.png
                gene_name: TTC15
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 80 percent done.
TTC18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.020515e-02	ci left: 7.819844e-01	ci right 7.980463e-01	k: 7901	n:10000
Cons ci ratio: 1.957012e-02	ci left: 7.925305e-01	ci right 8.082941e-01	k: 8005	n:10000
KS ci ratio: 2.500901e-02	ci left: 7.017023e-01	ci right 7.195748e-01	k: 7107	n:10000
TTC18   10000 perm   2 sec   (5417 perm/sec)   p_kst 7.107000e-01   p_cons 8.005000e-01   p_joint 7.901000e-01

Outputting figure to mutsig2_images.part000000000183/TTC18.2_3474_10000_0.7107_0.8005_0.7901.png
                gene_name: TTC18
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 83 percent done.
TTC19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.362105e-01	ci left: 2.362888e-02	ci right 3.005075e-02	k: 267	n:10000
Cons ci ratio: 3.512569e-01	ci left: 1.014137e-02	ci right 1.454954e-02	k: 122	n:10000
KS ci ratio: 5.481118e-02	ci left: 3.290250e-01	ci right 3.476693e-01	k: 3383	n:10000
TTC19   10000 perm   2 sec   (6255 perm/sec)   p_kst 3.383000e-01   p_cons 1.220000e-02   p_joint 2.670000e-02

Joint ci ratio: 1.978447e-01	ci left: 1.734330e-02	ci right 2.119826e-02	k: 384	n:20000
Cons ci ratio: 2.439040e-01	ci left: 1.119427e-02	ci right 1.434975e-02	k: 254	n:20000
KS ci ratio: 3.930460e-02	ci left: 3.255726e-01	ci right 3.386762e-01	k: 6642	n:20000
TTC19   20000 perm   4 sec   (5555 perm/sec)   p_kst 3.321000e-01   p_cons 1.270000e-02   p_joint 1.920000e-02

Joint ci ratio: 1.795854e-01	ci left: 1.422811e-02	ci right 1.706682e-02	k: 468	n:30000
Cons ci ratio: 2.028049e-01	ci left: 1.105183e-02	ci right 1.357727e-02	k: 368	n:30000
KS ci ratio: 3.249532e-02	ci left: 3.212935e-01	ci right 3.319401e-01	k: 9798	n:30000
TTC19   30000 perm   6 sec   (5274 perm/sec)   p_kst 3.266000e-01   p_cons 1.226667e-02   p_joint 1.560000e-02

Joint ci ratio: 1.617243e-01	ci left: 1.330337e-02	ci right 1.566788e-02	k: 578	n:40000
Cons ci ratio: 1.928357e-01	ci left: 9.238511e-03	ci right 1.123355e-02	k: 408	n:40000
KS ci ratio: 2.825464e-02	ci left: 3.202609e-01	ci right 3.294645e-01	k: 12994	n:40000
TTC19   40000 perm   8 sec   (5099 perm/sec)   p_kst 3.248500e-01   p_cons 1.020000e-02   p_joint 1.445000e-02

Joint ci ratio: 1.476556e-01	ci left: 1.287283e-02	ci right 1.494417e-02	k: 694	n:50000
Cons ci ratio: 1.737267e-01	ci left: 9.203821e-03	ci right 1.097375e-02	k: 503	n:50000
KS ci ratio: 2.520591e-02	ci left: 3.218915e-01	ci right 3.301287e-01	k: 16300	n:50000
TTC19   50000 perm   10 sec   (4964 perm/sec)   p_kst 3.260000e-01   p_cons 1.006000e-02   p_joint 1.388000e-02

Joint ci ratio: 1.460328e-01	ci left: 1.099949e-02	ci right 1.274820e-02	k: 711	n:60000
Cons ci ratio: 1.608627e-01	ci left: 9.011227e-03	ci right 1.060339e-02	k: 587	n:60000
KS ci ratio: 2.300904e-02	ci left: 3.222661e-01	ci right 3.297841e-01	k: 19561	n:60000
TTC19   60000 perm   12 sec   (4849 perm/sec)   p_kst 3.260167e-01   p_cons 9.783333e-03   p_joint 1.185000e-02

Joint ci ratio: 1.301899e-01	ci left: 1.195271e-02	ci right 1.363089e-02	k: 894	n:70000
Cons ci ratio: 1.517477e-01	ci left: 8.725900e-03	ci right 1.017234e-02	k: 660	n:70000
KS ci ratio: 2.130108e-02	ci left: 3.225704e-01	ci right 3.295297e-01	k: 22823	n:70000
TTC19   70000 perm   15 sec   (4741 perm/sec)   p_kst 3.260429e-01   p_cons 9.428571e-03   p_joint 1.277143e-02

Joint ci ratio: 1.078336e-01	ci left: 1.537302e-02	ci right 1.713731e-02	k: 1299	n:80000
Cons ci ratio: 1.435311e-01	ci left: 8.574114e-03	ci right 9.911839e-03	k: 738	n:80000
KS ci ratio: 1.992396e-02	ci left: 3.228267e-01	ci right 3.293359e-01	k: 26086	n:80000
TTC19   80000 perm   17 sec   (4649 perm/sec)   p_kst 3.260750e-01   p_cons 9.225000e-03   p_joint 1.623750e-02

Joint ci ratio: 1.195760e-01	ci left: 1.109394e-02	ci right 1.251556e-02	k: 1061	n:90000
Cons ci ratio: 1.356833e-01	ci left: 8.565074e-03	ci right 9.822422e-03	k: 826	n:90000
KS ci ratio: 1.882058e-02	ci left: 3.221729e-01	ci right 3.283050e-01	k: 29271	n:90000
TTC19   90000 perm   20 sec   (4575 perm/sec)   p_kst 3.252333e-01   p_cons 9.177778e-03   p_joint 1.178889e-02

Joint ci ratio: 9.480229e-02	ci left: 1.601247e-02	ci right 1.761573e-02	k: 1680	n:100000
Cons ci ratio: 1.293535e-01	ci left: 8.511043e-03	ci right 9.697693e-03	k: 909	n:100000
KS ci ratio: 1.785048e-02	ci left: 3.224363e-01	ci right 3.282538e-01	k: 32534	n:100000
TTC19   100000 perm   22 sec   (4502 perm/sec)   p_kst 3.253400e-01   p_cons 9.090000e-03   p_joint 1.680000e-02

Joint ci ratio: 9.244847e-02	ci left: 1.533781e-02	ci right 1.683332e-02	k: 1768	n:110000
Cons ci ratio: 1.231477e-01	ci left: 8.564892e-03	ci right 9.697579e-03	k: 1003	n:110000
KS ci ratio: 1.703228e-02	ci left: 3.222504e-01	ci right 3.277952e-01	k: 35752	n:110000
TTC19   110000 perm   25 sec   (4432 perm/sec)   p_kst 3.250182e-01   p_cons 9.118182e-03   p_joint 1.607273e-02

Joint ci ratio: 9.528286e-02	ci left: 1.324519e-02	ci right 1.457845e-02	k: 1668	n:120000
Cons ci ratio: 1.170066e-01	ci left: 8.724171e-03	ci right 9.816409e-03	k: 1111	n:120000
KS ci ratio: 1.631500e-02	ci left: 3.221588e-01	ci right 3.274663e-01	k: 38977	n:120000
TTC19   120000 perm   28 sec   (4361 perm/sec)   p_kst 3.248083e-01   p_cons 9.258333e-03   p_joint 1.390000e-02

Joint ci ratio: 8.454100e-02	ci left: 1.558096e-02	ci right 1.696382e-02	k: 2114	n:130000
Cons ci ratio: 1.121660e-01	ci left: 8.785340e-03	ci right 9.836722e-03	k: 1209	n:130000
KS ci ratio: 1.565906e-02	ci left: 3.227073e-01	ci right 3.278082e-01	k: 42283	n:130000
TTC19   130000 perm   30 sec   (4293 perm/sec)   p_kst 3.252538e-01   p_cons 9.300000e-03   p_joint 1.626154e-02

Joint ci ratio: 9.561104e-02	ci left: 1.129670e-02	ci right 1.243794e-02	k: 1660	n:140000
Cons ci ratio: 1.080472e-01	ci left: 8.810762e-03	ci right 9.824003e-03	k: 1303	n:140000
KS ci ratio: 1.506973e-02	ci left: 3.233736e-01	ci right 3.282908e-01	k: 45616	n:140000
TTC19   140000 perm   33 sec   (4229 perm/sec)   p_kst 3.258286e-01   p_cons 9.307143e-03   p_joint 1.185714e-02

Joint ci ratio: 9.155621e-02	ci left: 1.152024e-02	ci right 1.263207e-02	k: 1810	n:150000
Cons ci ratio: 1.042384e-01	ci left: 8.852888e-03	ci right 9.832885e-03	k: 1400	n:150000
KS ci ratio: 1.455595e-02	ci left: 3.235414e-01	ci right 3.282920e-01	k: 48887	n:150000
TTC19   150000 perm   36 sec   (4166 perm/sec)   p_kst 3.259133e-01   p_cons 9.333333e-03   p_joint 1.206667e-02

Joint ci ratio: 8.873577e-02	ci left: 1.151499e-02	ci right 1.259030e-02	k: 1927	n:160000
Cons ci ratio: 1.011816e-01	ci left: 8.823269e-03	ci right 9.769641e-03	k: 1486	n:160000
KS ci ratio: 1.409719e-02	ci left: 3.235098e-01	ci right 3.281090e-01	k: 52129	n:160000
TTC19   160000 perm   39 sec   (4103 perm/sec)   p_kst 3.258063e-01   p_cons 9.287500e-03   p_joint 1.204375e-02

Joint ci ratio: 8.618222e-02	ci left: 1.150507e-02	ci right 1.254697e-02	k: 2043	n:170000
Cons ci ratio: 9.831581e-02	ci left: 8.808983e-03	ci right 9.725517e-03	k: 1574	n:170000
KS ci ratio: 1.367301e-02	ci left: 3.236837e-01	ci right 3.281457e-01	k: 55405	n:170000
TTC19   170000 perm   42 sec   (4040 perm/sec)   p_kst 3.259118e-01   p_cons 9.258824e-03   p_joint 1.201765e-02

Outputting figure to mutsig2_images.part000000000183/TTC19.2_1546_170000_0.32591_0.0092588_0.012018.png
                gene_name: TTC19
               theta_stop: 0.098 
                    nperm: 170000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.0093 
      ci_cons_bounds_left: 0.0088 
     ci_cons_bounds_right: 0.0097 
                  p_joint: 0.012 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.013 

Current progress: 86 percent done.
TTC23L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.355138e-02	ci left: 8.870840e-01	ci right 8.992859e-01	k: 8933	n:10000
Cons ci ratio: 1.329427e-02	ci left: 8.907739e-01	ci right 9.027938e-01	k: 8969	n:10000
KS ci ratio: 1.277074e-01	ci left: 8.057611e-02	ci right 9.166638e-02	k: 860	n:10000
TTC23L   10000 perm   2 sec   (6610 perm/sec)   p_kst 8.600000e-02   p_cons 8.969000e-01   p_joint 8.933000e-01

Joint ci ratio: 2.742957e-03	ci left: 9.888965e-01	ci right 9.916582e-01	k: 19807	n:20000
Cons ci ratio: 9.297232e-03	ci left: 8.946389e-01	ci right 9.030448e-01	k: 17978	n:20000
KS ci ratio: 9.264975e-02	ci left: 7.833140e-02	ci right 8.599059e-02	k: 1642	n:20000
TTC23L   20000 perm   3 sec   (5871 perm/sec)   p_kst 8.210000e-02   p_cons 8.989000e-01   p_joint 9.903500e-01

Outputting figure to mutsig2_images.part000000000183/TTC23L.2_1122_20000_0.0821_0.8989_0.99035.png
                gene_name: TTC23L
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.082 
        ci_ks_bounds_left: 0.078 
       ci_ks_bounds_right: 0.086 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 89 percent done.
TTC30B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.314008e-03	ci left: 9.911641e-01	ci right 9.945392e-01	k: 9930	n:10000
Cons ci ratio: 6.974550e-03	ci left: 9.658346e-01	ci right 9.726884e-01	k: 9694	n:10000
KS ci ratio: 1.299056e-02	ci left: 8.950816e-01	ci right 9.068836e-01	k: 9011	n:10000
TTC30B   10000 perm   2 sec   (6102 perm/sec)   p_kst 9.011000e-01   p_cons 9.694000e-01   p_joint 9.930000e-01

Outputting figure to mutsig2_images.part000000000183/TTC30B.2_2002_10000_0.9011_0.9694_0.993.png
                gene_name: TTC30B
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 91 percent done.
TTC39A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.374371e-02	ci left: 2.655721e-01	ci right 2.831595e-01	k: 2743	n:10000
Cons ci ratio: 1.388648e-01	ci left: 6.865367e-02	ci right 7.899624e-02	k: 737	n:10000
KS ci ratio: 1.689963e-02	ci left: 8.360254e-01	ci right 8.503741e-01	k: 8433	n:10000
TTC39A   10000 perm   2 sec   (6178 perm/sec)   p_kst 8.433000e-01   p_cons 7.370000e-02   p_joint 2.743000e-01

Joint ci ratio: 5.382621e-02	ci left: 2.039271e-01	ci right 2.152575e-01	k: 4191	n:20000
Cons ci ratio: 9.342632e-02	ci left: 7.710809e-02	ci right 8.471428e-02	k: 1617	n:20000
KS ci ratio: 1.180876e-02	ci left: 8.413276e-01	ci right 8.513715e-01	k: 16928	n:20000
TTC39A   20000 perm   4 sec   (5489 perm/sec)   p_kst 8.464000e-01   p_cons 8.085000e-02   p_joint 2.095500e-01

Outputting figure to mutsig2_images.part000000000183/TTC39A.2_1866_20000_0.8464_0.08085_0.20955.png
                gene_name: TTC39A
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.081 
      ci_cons_bounds_left: 0.077 
     ci_cons_bounds_right: 0.085 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 94 percent done.
TTC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.240852e-02	ci left: 7.451322e-01	ci right 7.621198e-01	k: 7537	n:10000
Cons ci ratio: 4.049311e-02	ci left: 4.738613e-01	ci right 4.935482e-01	k: 4837	n:10000
KS ci ratio: 2.817083e-02	ci left: 6.500161e-01	ci right 6.686910e-01	k: 6594	n:10000
TTC4   10000 perm   2 sec   (6464 perm/sec)   p_kst 6.594000e-01   p_cons 4.837000e-01   p_joint 7.537000e-01

Outputting figure to mutsig2_images.part000000000183/TTC4.2_1204_10000_0.6594_0.4837_0.7537.png
                gene_name: TTC4
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.76 

Current progress: 97 percent done.
TTC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.034183e-02	ci left: 6.157275e-01	ci right 6.347995e-01	k: 6253	n:10000
Cons ci ratio: 3.262681e-02	ci left: 5.809875e-01	ci right 6.003596e-01	k: 5907	n:10000
KS ci ratio: 9.131491e-02	ci left: 1.484485e-01	ci right 1.627527e-01	k: 1555	n:10000
TTC5   10000 perm   2 sec   (6421 perm/sec)   p_kst 1.555000e-01   p_cons 5.907000e-01   p_joint 6.253000e-01

Outputting figure to mutsig2_images.part000000000183/TTC5.2_1363_10000_0.1555_0.5907_0.6253.png
                gene_name: TTC5
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.63 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000183
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 183 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1647>
Subject: Job 8004671: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1647>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000184> was used as the working directory.
Started at Sun Nov 11 15:23:39 2012
Results reported at Sun Nov 11 15:35:44 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000184.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000184.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 184  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000184.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    764.42 sec.
    Max Memory :      4791 MB
    Max Swap   :      7256 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
184
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 184
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 184: processing genes 16557 - 16646
Calculating significance of each gene.
Using projection method.
16557	TTC7A	8.038087e-01
16558	TTC7B	9.032501e-01
16559	TTC8	8.576236e-01
16560	TTC9	1
16561	TTC9B	3.684017e-01
16562	TTC9C	1
16563	TTF1	3.454638e-01
16564	TTF2	8.014014e-01
16565	TTK	1.763899e-01
16566	TTL	1
16567	TTLL1	4.901175e-01
16568	TTLL10	1
16569	TTLL11	1
16570	TTLL12	8.504389e-01
16571	TTLL13	1
16572	TTLL2	4.040694e-02
16573	TTLL3	9.744586e-01
16574	TTLL4	3.534324e-01
16575	TTLL5	1
16576	TTLL6	3.276513e-01
16577	TTLL7	9.179892e-01
16578	TTLL8	8.602228e-01
16579	TTLL9	7.537843e-01
16580	TTN	1
16581	TTPA	9.416365e-03
16582	TTPAL	6.014821e-01
16583	TTR	1.681056e-01
16584	TTYH1	2.526020e-01
16585	TTYH2	1
16586	TTYH3	7.089879e-02
16587	TUB	1
16588	TUBA1A	7.168531e-01
16589	TUBA1B	6.720693e-01
16590	TUBA1C	6.627613e-01
16591	TUBA3C	1.589064e-03
16592	TUBA3D	4.718803e-01
16593	TUBA3E	1.808966e-01
16594	TUBA4A	6.700291e-01
16595	TUBA8	8.367650e-01
16596	TUBAL3	6.113697e-01
16597	TUBB	7.145125e-01
16598	TUBB1	8.384585e-01
16599	TUBB2A	2.296817e-01
16600	TUBB2B	1
16601	TUBB2C	1
16602	TUBB3	6.451596e-01
16603	TUBB4	1.587356e-01
16604	TUBB4Q	3.955807e-01
16605	TUBB6	1
16606	TUBB8	7.644418e-01
16607	TUBD1	1
16608	TUBE1	1
16609	TUBG1	1
16610	TUBG2	5.183126e-01
16611	TUBGCP2	1
16612	TUBGCP3	1
16613	TUBGCP4	7.310559e-01
16614	TUBGCP5	9.278726e-01
16615	TUBGCP6	9.984445e-01
16616	TUFM	6.581913e-01
16617	TUFT1	8.342247e-01
16618	TULP1	1
16619	TULP2	4.410494e-01
16620	TULP3	3.263831e-02
16621	TULP4	7.946277e-01
16622	TUSC2	1
16623	TUSC3	4.329875e-01
16624	TUSC5	3.180848e-01
16625	TUT1	4.094294e-01
16626	TWF1	5.962137e-01
16627	TWF2	5.407633e-01
16628	TWIST1	1
16629	TWISTNB	1.769483e-01
16630	TWSG1	1
16631	TXK	7.002658e-01
16632	TXLNA	1
16633	TXLNB	1.701339e-01
16634	TXLNG	2.532171e-01
16635	TXN	1
16636	TXN2	5.144231e-01
16637	TXNDC11	1
16638	TXNDC12	1
16639	TXNDC15	7.062510e-01
16640	TXNDC16	6.500728e-01
16641	TXNDC17	1
16642	TXNDC2	5.796536e-01
16643	TXNDC3	7.445387e-02
16644	TXNDC5	7.951521e-01
16645	TXNDC6	4.736602e-01
16646	TXNDC8	1
Done

Running MutSig 2:
Scatter job 184: processing genes 16557 - 16646
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
TTN
Processing conservation and coverage...
8% 17% 26% 35% 44% 53% 62% 71% 80% 89% 98% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.910361e-02	ci left: 2.963806e-01	ci right 3.145329e-01	k: 3054	n:10000
Cons ci ratio: 1.839835e-02	ci left: 8.118192e-01	ci right 8.269942e-01	k: 8195	n:10000
KS ci ratio: 7.463647e-02	ci left: 2.080667e-01	ci right 2.242990e-01	k: 2161	n:10000
TTN   10000 perm   39 sec   (257 perm/sec)   p_kst 2.161000e-01   p_cons 8.195000e-01   p_joint 3.054000e-01

Outputting figure to mutsig2_images.part000000000184/TTN.332_111433_10000_0.2161_0.8195_0.3054.png
                gene_name: TTN
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 2 percent done.
TTLL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.923811e-02	ci left: 6.330162e-01	ci right 6.519008e-01	k: 6425	n:10000
KS ci ratio: 1.249691e-02	ci left: 9.019602e-01	ci right 9.134010e-01	k: 9078	n:10000
TTLL4   10000 perm   2 sec   (5019 perm/sec)   p_kst 9.078000e-01   p_cons 6.425000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000184/TTLL4.7_3672_10000_0.9078_0.6425_1.png
                gene_name: TTLL4
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 5 percent done.
TUBA3C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.284895e-02	ci left: 7.377518e-01	ci right 7.549045e-01	k: 7464	n:10000
Cons ci ratio: 4.592497e-02	ci left: 4.116961e-01	ci right 4.311497e-01	k: 4214	n:10000
KS ci ratio: 2.610159e-02	ci left: 6.836528e-01	ci right 7.018348e-01	k: 6928	n:10000
TUBA3C   10000 perm   2 sec   (5560 perm/sec)   p_kst 6.928000e-01   p_cons 4.214000e-01   p_joint 7.464000e-01

Outputting figure to mutsig2_images.part000000000184/TUBA3C.7_1373_10000_0.6928_0.4214_0.7464.png
                gene_name: TUBA3C
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.75 

Current progress: 7 percent done.
TTLL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.202867e-01	ci left: 9.019709e-02	ci right 1.018395e-01	k: 959	n:10000
Cons ci ratio: 1.562625e-01	ci left: 5.455711e-02	ci right 6.390171e-02	k: 591	n:10000
KS ci ratio: 7.512432e-02	ci left: 2.058972e-01	ci right 2.220697e-01	k: 2139	n:10000
TTLL2   10000 perm   2 sec   (5491 perm/sec)   p_kst 2.139000e-01   p_cons 5.910000e-02   p_joint 9.590000e-02

Joint ci ratio: 7.616503e-02	ci left: 1.124780e-01	ci right 1.214337e-01	k: 2338	n:20000
Cons ci ratio: 1.089404e-01	ci left: 5.747851e-02	ci right 6.414988e-02	k: 1215	n:20000
KS ci ratio: 5.343936e-02	ci left: 2.063031e-01	ci right 2.176807e-01	k: 4239	n:20000
TTLL2   20000 perm   4 sec   (4956 perm/sec)   p_kst 2.119500e-01   p_cons 6.075000e-02   p_joint 1.169000e-01

Joint ci ratio: 7.465479e-02	ci left: 8.101590e-02	ci right 8.733157e-02	k: 2524	n:30000
Cons ci ratio: 8.787778e-02	ci left: 5.946019e-02	ci right 6.495830e-02	k: 1865	n:30000
KS ci ratio: 4.389610e-02	ci left: 2.053695e-01	ci right 2.146201e-01	k: 6299	n:30000
TTLL2   30000 perm   6 sec   (4722 perm/sec)   p_kst 2.099667e-01   p_cons 6.216667e-02   p_joint 8.413333e-02

Outputting figure to mutsig2_images.part000000000184/TTLL2.6_1791_30000_0.20997_0.062167_0.084133.png
                gene_name: TTLL2
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.062 
      ci_cons_bounds_left: 0.059 
     ci_cons_bounds_right: 0.065 
                  p_joint: 0.084 
     ci_joint_bounds_left: 0.081 
    ci_joint_bounds_right: 0.087 

Current progress: 9 percent done.
TUBGCP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.813050e-02	ci left: 8.161888e-01	ci right 8.312222e-01	k: 8238	n:10000
Cons ci ratio: 1.556815e-02	ci left: 8.569213e-01	ci right 8.704660e-01	k: 8638	n:10000
KS ci ratio: 3.331963e-02	ci left: 5.707557e-01	ci right 5.901974e-01	k: 5805	n:10000
TUBGCP5   10000 perm   2 sec   (4863 perm/sec)   p_kst 5.805000e-01   p_cons 8.638000e-01   p_joint 8.238000e-01

Outputting figure to mutsig2_images.part000000000184/TUBGCP5.6_3214_10000_0.5805_0.8638_0.8238.png
                gene_name: TUBGCP5
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 12 percent done.
TULP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.751436e-02	ci left: 3.952579e-01	ci right 4.145975e-01	k: 4049	n:10000
Cons ci ratio: 5.532926e-02	ci left: 3.248548e-01	ci right 3.434420e-01	k: 3341	n:10000
KS ci ratio: 6.028013e-02	ci left: 2.881535e-01	ci right 3.061648e-01	k: 2971	n:10000
TULP4   10000 perm   2 sec   (4605 perm/sec)   p_kst 2.971000e-01   p_cons 3.341000e-01   p_joint 4.049000e-01

Outputting figure to mutsig2_images.part000000000184/TULP4.6_4688_10000_0.2971_0.3341_0.4049.png
                gene_name: TULP4
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.41 

Current progress: 14 percent done.
TTF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.316395e-02	ci left: 4.421108e-01	ci right 4.617172e-01	k: 4519	n:10000
Cons ci ratio: 5.019975e-02	ci left: 3.691794e-01	ci right 3.882913e-01	k: 3787	n:10000
KS ci ratio: 4.598151e-02	ci left: 4.110981e-01	ci right 4.305480e-01	k: 4208	n:10000
TTF1   10000 perm   2 sec   (5476 perm/sec)   p_kst 4.208000e-01   p_cons 3.787000e-01   p_joint 4.519000e-01

Outputting figure to mutsig2_images.part000000000184/TTF1.5_2758_10000_0.4208_0.3787_0.4519.png
                gene_name: TTF1
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 16 percent done.
TTK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.323371e-02	ci left: 2.144784e-01	ci right 2.308835e-01	k: 2226	n:10000
Cons ci ratio: 1.629514e-01	ci left: 5.022725e-02	ci right 5.923435e-02	k: 546	n:10000
KS ci ratio: 1.803680e-02	ci left: 8.177134e-01	ci right 8.326966e-01	k: 8253	n:10000
TTK   10000 perm   2 sec   (5133 perm/sec)   p_kst 8.253000e-01   p_cons 5.460000e-02   p_joint 2.226000e-01

Joint ci ratio: 4.841629e-02	ci left: 2.408368e-01	ci right 2.528369e-01	k: 4936	n:20000
Cons ci ratio: 1.139647e-01	ci left: 5.265862e-02	ci right 5.907127e-02	k: 1116	n:20000
KS ci ratio: 1.278661e-02	ci left: 8.192066e-01	ci right 8.297988e-01	k: 16491	n:20000
TTK   20000 perm   4 sec   (4666 perm/sec)   p_kst 8.245500e-01   p_cons 5.580000e-02   p_joint 2.468000e-01

Joint ci ratio: 3.954780e-02	ci left: 2.417968e-01	ci right 2.515857e-01	k: 7400	n:30000
Cons ci ratio: 9.123533e-02	ci left: 5.531599e-02	ci right 6.063668e-02	k: 1738	n:30000
KS ci ratio: 1.038533e-02	ci left: 8.217292e-01	ci right 8.303409e-01	k: 24782	n:30000
TTK   30000 perm   7 sec   (4445 perm/sec)   p_kst 8.260667e-01   p_cons 5.793333e-02   p_joint 2.466667e-01

Outputting figure to mutsig2_images.part000000000184/TTK.5_2658_30000_0.82607_0.057933_0.24667.png
                gene_name: TTK
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.058 
      ci_cons_bounds_left: 0.055 
     ci_cons_bounds_right: 0.061 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 19 percent done.
TUBA3E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.874988e-02	ci left: 6.407601e-01	ci right 6.595523e-01	k: 6502	n:10000
Cons ci ratio: 4.085963e-02	ci left: 4.693659e-01	ci right 4.890462e-01	k: 4792	n:10000
KS ci ratio: 3.221025e-02	ci left: 5.872089e-01	ci right 6.065346e-01	k: 5969	n:10000
TUBA3E   10000 perm   2 sec   (6289 perm/sec)   p_kst 5.969000e-01   p_cons 4.792000e-01   p_joint 6.502000e-01

Outputting figure to mutsig2_images.part000000000184/TUBA3E.5_1373_10000_0.5969_0.4792_0.6502.png
                gene_name: TUBA3E
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 21 percent done.
TUBGCP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.070545e-02	ci left: 6.101014e-01	ci right 6.292288e-01	k: 6197	n:10000
KS ci ratio: 2.381504e-02	ci left: 7.215864e-01	ci right 7.390793e-01	k: 7304	n:10000
TUBGCP2   10000 perm   2 sec   (5148 perm/sec)   p_kst 7.304000e-01   p_cons 6.197000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000184/TUBGCP2.5_2777_10000_0.7304_0.6197_1.png
                gene_name: TUBGCP2
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 23 percent done.
TULP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.247176e-02	ci left: 3.486956e-01	ci right 3.675871e-01	k: 3581	n:10000
Cons ci ratio: 8.186790e-02	ci left: 1.788095e-01	ci right 1.941736e-01	k: 1864	n:10000
KS ci ratio: 4.183805e-02	ci left: 4.575817e-01	ci right 4.772373e-01	k: 4674	n:10000
TULP3   10000 perm   2 sec   (5256 perm/sec)   p_kst 4.674000e-01   p_cons 1.864000e-01   p_joint 3.581000e-01

Outputting figure to mutsig2_images.part000000000184/TULP3.5_1574_10000_0.4674_0.1864_0.3581.png
                gene_name: TULP3
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 26 percent done.
TUT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.369350e-02	ci left: 1.723174e-01	ci right 1.874696e-01	k: 1798	n:10000
Cons ci ratio: 1.631092e-01	ci left: 5.013112e-02	ci right 5.913054e-02	k: 545	n:10000
KS ci ratio: 3.449668e-02	ci left: 5.537122e-01	ci right 5.732508e-01	k: 5635	n:10000
TUT1   10000 perm   2 sec   (5404 perm/sec)   p_kst 5.635000e-01   p_cons 5.450000e-02   p_joint 1.798000e-01

Joint ci ratio: 6.031868e-02	ci left: 1.690650e-01	ci right 1.796299e-01	k: 3486	n:20000
Cons ci ratio: 1.193816e-01	ci left: 4.808865e-02	ci right 5.424267e-02	k: 1022	n:20000
KS ci ratio: 2.450610e-02	ci left: 5.543392e-01	ci right 5.681430e-01	k: 11225	n:20000
TUT1   20000 perm   4 sec   (4869 perm/sec)   p_kst 5.612500e-01   p_cons 5.110000e-02   p_joint 1.743000e-01

Joint ci ratio: 5.345606e-02	ci left: 1.479216e-01	ci right 1.560793e-01	k: 4559	n:30000
Cons ci ratio: 9.722523e-02	ci left: 4.889563e-02	ci right 5.392503e-02	k: 1541	n:30000
KS ci ratio: 1.953108e-02	ci left: 5.675127e-01	ci right 5.787398e-01	k: 17194	n:30000
TUT1   30000 perm   6 sec   (4670 perm/sec)   p_kst 5.731333e-01   p_cons 5.136667e-02   p_joint 1.519667e-01

Outputting figure to mutsig2_images.part000000000184/TUT1.5_2775_30000_0.57313_0.051367_0.15197.png
                gene_name: TUT1
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.051 
      ci_cons_bounds_left: 0.049 
     ci_cons_bounds_right: 0.054 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 28 percent done.
TXLNB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.330595e-02	ci left: 5.709563e-01	ci right 5.903967e-01	k: 5807	n:10000
Cons ci ratio: 7.465850e-02	ci left: 2.079681e-01	ci right 2.241977e-01	k: 2160	n:10000
KS ci ratio: 2.165393e-02	ci left: 7.577777e-01	ci right 7.744670e-01	k: 7662	n:10000
TXLNB   10000 perm   2 sec   (5915 perm/sec)   p_kst 7.662000e-01   p_cons 2.160000e-01   p_joint 5.807000e-01

Outputting figure to mutsig2_images.part000000000184/TXLNB.5_2091_10000_0.7662_0.216_0.5807.png
                gene_name: TXLNB
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 30 percent done.
TXNDC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.856686e-02	ci left: 6.436774e-01	ci right 6.624334e-01	k: 6531	n:10000
KS ci ratio: 2.258952e-02	ci left: 7.420988e-01	ci right 7.591550e-01	k: 7507	n:10000
TXNDC3   10000 perm   2 sec   (5723 perm/sec)   p_kst 7.507000e-01   p_cons 6.531000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000184/TXNDC3.5_1827_10000_0.7507_0.6531_1.png
                gene_name: TXNDC3
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 33 percent done.
TTPA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.314920e-02	ci left: 2.148731e-01	ci right 2.312886e-01	k: 2230	n:10000
Cons ci ratio: 3.349779e-02	ci left: 5.681483e-01	ci right 5.876063e-01	k: 5779	n:10000
KS ci ratio: 1.159281e-01	ci left: 9.662172e-02	ci right 1.086109e-01	k: 1025	n:10000
TTPA   10000 perm   2 sec   (6580 perm/sec)   p_kst 1.025000e-01   p_cons 5.779000e-01   p_joint 2.230000e-01

Joint ci ratio: 5.813935e-02	ci left: 1.797879e-01	ci right 1.906037e-01	k: 3703	n:20000
Cons ci ratio: 2.344842e-02	ci left: 5.759796e-01	ci right 5.896963e-01	k: 11657	n:20000
KS ci ratio: 8.313105e-02	ci left: 9.587565e-02	ci right 1.042410e-01	k: 2000	n:20000
TTPA   20000 perm   3 sec   (5844 perm/sec)   p_kst 1.000000e-01   p_cons 5.828500e-01   p_joint 1.851500e-01

Outputting figure to mutsig2_images.part000000000184/TTPA.4_857_20000_0.1_0.58285_0.18515.png
                gene_name: TTPA
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.096 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 35 percent done.
TTYH3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.660467e-02	ci left: 8.407102e-01	ci right 8.548865e-01	k: 8479	n:10000
KS ci ratio: 1.838591e-02	ci left: 8.120224e-01	ci right 8.271909e-01	k: 8197	n:10000
TTYH3   10000 perm   2 sec   (6227 perm/sec)   p_kst 8.197000e-01   p_cons 8.479000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000184/TTYH3.4_1628_10000_0.8197_0.8479_1.png
                gene_name: TTYH3
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 37 percent done.
TUBB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.737048e-03	ci left: 9.831763e-01	ci right 9.879347e-01	k: 9857	n:10000
KS ci ratio: 8.327350e-03	ci left: 9.527344e-01	ci right 9.607967e-01	k: 9569	n:10000
TUBB4   10000 perm   2 sec   (6220 perm/sec)   p_kst 9.569000e-01   p_cons 9.857000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000184/TUBB4.4_1351_10000_0.9569_0.9857_1.png
                gene_name: TUBB4
               theta_stop: 0.0083 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 40 percent done.
TXNDC16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.450369e-02	ci left: 5.536120e-01	ci right 5.731511e-01	k: 5634	n:10000
Cons ci ratio: 2.277052e-02	ci left: 7.390659e-01	ci right 7.561897e-01	k: 7477	n:10000
KS ci ratio: 5.495838e-02	ci left: 3.278334e-01	ci right 3.464615e-01	k: 3371	n:10000
TXNDC16   10000 perm   2 sec   (5455 perm/sec)   p_kst 3.371000e-01   p_cons 7.477000e-01   p_joint 5.634000e-01

Outputting figure to mutsig2_images.part000000000184/TXNDC16.4_2554_10000_0.3371_0.7477_0.5634.png
                gene_name: TXNDC16
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 42 percent done.
TTF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.469974e-01	ci left: 1.041531e-02	ci right 1.487532e-02	k: 125	n:10000
Cons ci ratio: 1.551513e-01	ci left: 5.532768e-02	ci right 6.473065e-02	k: 599	n:10000
KS ci ratio: 4.884054e-01	ci left: 4.844389e-03	ci right 8.053335e-03	k: 63	n:10000
TTF2   10000 perm   2 sec   (5750 perm/sec)   p_kst 6.300000e-03   p_cons 5.990000e-02   p_joint 1.250000e-02

Joint ci ratio: 5.592997e-01	ci left: 1.770085e-03	ci right 3.180807e-03	k: 48	n:20000
Cons ci ratio: 1.104967e-01	ci left: 5.591985e-02	ci right 6.250903e-02	k: 1183	n:20000
KS ci ratio: 3.970395e-01	ci left: 3.889694e-03	ci right 5.858508e-03	k: 96	n:20000
TTF2   20000 perm   4 sec   (5168 perm/sec)   p_kst 4.800000e-03   p_cons 5.915000e-02   p_joint 2.400000e-03

Joint ci ratio: 4.520690e-01	ci left: 1.937345e-03	ci right 3.095698e-03	k: 74	n:30000
Cons ci ratio: 9.027489e-02	ci left: 5.645771e-02	ci right 6.182806e-02	k: 1773	n:30000
KS ci ratio: 3.225177e-01	ci left: 4.110775e-03	ci right 5.720741e-03	k: 146	n:30000
TTF2   30000 perm   6 sec   (4941 perm/sec)   p_kst 4.866667e-03   p_cons 5.910000e-02   p_joint 2.466667e-03

Joint ci ratio: 3.272163e-01	ci left: 2.990936e-03	ci right 4.182924e-03	k: 142	n:40000
Cons ci ratio: 7.778527e-02	ci left: 5.737311e-02	ci right 6.204106e-02	k: 2387	n:40000
KS ci ratio: 2.837070e-01	ci left: 4.076631e-03	ci right 5.446791e-03	k: 189	n:40000
TTF2   40000 perm   8 sec   (4771 perm/sec)   p_kst 4.725000e-03   p_cons 5.967500e-02   p_joint 3.550000e-03

Joint ci ratio: 3.019230e-01	ci left: 2.853302e-03	ci right 3.885687e-03	k: 167	n:50000
Cons ci ratio: 6.935131e-02	ci left: 5.797331e-02	ci right 6.215795e-02	k: 3002	n:50000
KS ci ratio: 2.601620e-01	ci left: 3.932257e-03	ci right 5.126391e-03	k: 225	n:50000
TTF2   50000 perm   11 sec   (4645 perm/sec)   p_kst 4.500000e-03   p_cons 6.004000e-02   p_joint 3.340000e-03

Joint ci ratio: 3.333058e-01	ci left: 1.917344e-03	ci right 2.698712e-03	k: 137	n:60000
Cons ci ratio: 6.323052e-02	ci left: 5.829334e-02	ci right 6.211601e-02	k: 3611	n:60000
KS ci ratio: 2.345587e-01	ci left: 4.089995e-03	ci right 5.192096e-03	k: 277	n:60000
TTF2   60000 perm   13 sec   (4531 perm/sec)   p_kst 4.616667e-03   p_cons 6.018333e-02   p_joint 2.283333e-03

Joint ci ratio: 4.062121e-01	ci left: 1.059627e-03	ci right 1.611615e-03	k: 92	n:70000
Cons ci ratio: 5.876304e-02	ci left: 5.801232e-02	ci right 6.153857e-02	k: 4183	n:70000
KS ci ratio: 2.207201e-01	ci left: 3.990667e-03	ci right 4.993946e-03	k: 313	n:70000
TTF2   70000 perm   16 sec   (4432 perm/sec)   p_kst 4.471429e-03   p_cons 5.975714e-02   p_joint 1.314286e-03

Joint ci ratio: 2.639211e-01	ci left: 2.387324e-03	ci right 3.124472e-03	k: 219	n:80000
Cons ci ratio: 5.498443e-02	ci left: 5.809260e-02	ci right 6.138941e-02	k: 4778	n:80000
KS ci ratio: 2.027682e-01	ci left: 4.178490e-03	ci right 5.132979e-03	k: 371	n:80000
TTF2   80000 perm   18 sec   (4344 perm/sec)   p_kst 4.637500e-03   p_cons 5.972500e-02   p_joint 2.737500e-03

Joint ci ratio: 2.465895e-01	ci left: 2.454909e-03	ci right 3.155526e-03	k: 251	n:90000
Cons ci ratio: 5.182640e-02	ci left: 5.821562e-02	ci right 6.132394e-02	k: 5378	n:90000
KS ci ratio: 1.910572e-01	ci left: 4.210713e-03	ci right 5.110561e-03	k: 418	n:90000
TTF2   90000 perm   21 sec   (4265 perm/sec)   p_kst 4.644444e-03   p_cons 5.975556e-02   p_joint 2.788889e-03

Joint ci ratio: 2.356293e-01	ci left: 2.434922e-03	ci right 3.094445e-03	k: 275	n:100000
Cons ci ratio: 4.921797e-02	ci left: 5.818000e-02	ci right 6.112561e-02	k: 5964	n:100000
KS ci ratio: 1.825486e-01	ci left: 4.170935e-03	ci right 5.018195e-03	k: 458	n:100000
TTF2   100000 perm   24 sec   (4182 perm/sec)   p_kst 4.580000e-03   p_cons 5.964000e-02   p_joint 2.750000e-03

Joint ci ratio: 1.340133e-01	ci left: 7.200698e-03	ci right 8.243690e-03	k: 848	n:110000
Cons ci ratio: 4.684216e-02	ci left: 5.845079e-02	ci right 6.126338e-02	k: 6583	n:110000
KS ci ratio: 1.742094e-01	ci left: 4.182593e-03	ci right 4.989325e-03	k: 503	n:110000
TTF2   110000 perm   27 sec   (4112 perm/sec)   p_kst 4.572727e-03   p_cons 5.984545e-02   p_joint 7.709091e-03

Joint ci ratio: 1.368440e-01	ci left: 6.326708e-03	ci right 7.264032e-03	k: 814	n:120000
Cons ci ratio: 4.491634e-02	ci left: 5.834121e-02	ci right 6.103011e-02	k: 7161	n:120000
KS ci ratio: 1.676865e-01	ci left: 4.153112e-03	ci right 4.921134e-03	k: 543	n:120000
TTF2   120000 perm   30 sec   (4040 perm/sec)   p_kst 4.525000e-03   p_cons 5.967500e-02   p_joint 6.783333e-03

Joint ci ratio: 1.462983e-01	ci left: 5.090360e-03	ci right 5.901169e-03	k: 713	n:130000
Cons ci ratio: 4.317742e-02	ci left: 5.833428e-02	ci right 6.091617e-02	k: 7750	n:130000
KS ci ratio: 1.603355e-01	ci left: 4.209863e-03	ci right 4.950964e-03	k: 594	n:130000
TTF2   130000 perm   33 sec   (3976 perm/sec)   p_kst 4.569231e-03   p_cons 5.961538e-02   p_joint 5.484615e-03

Joint ci ratio: 1.822711e-01	ci left: 2.992704e-03	ci right 3.599585e-03	k: 460	n:140000
Cons ci ratio: 4.150968e-02	ci left: 5.864129e-02	ci right 6.113412e-02	k: 8383	n:140000
KS ci ratio: 1.561982e-01	ci left: 4.128664e-03	ci right 4.834958e-03	k: 626	n:140000
TTF2   140000 perm   36 sec   (3915 perm/sec)   p_kst 4.471429e-03   p_cons 5.987857e-02   p_joint 3.285714e-03

Joint ci ratio: 2.202841e-01	ci left: 1.874677e-03	ci right 2.344901e-03	k: 315	n:150000
Cons ci ratio: 4.016131e-02	ci left: 5.851938e-02	ci right 6.092434e-02	k: 8957	n:150000
KS ci ratio: 1.523652e-01	ci left: 4.058506e-03	ci right 4.734205e-03	k: 658	n:150000
TTF2   150000 perm   39 sec   (3857 perm/sec)   p_kst 4.386667e-03   p_cons 5.971333e-02   p_joint 2.100000e-03

Joint ci ratio: 2.111243e-01	ci left: 1.923064e-03	ci right 2.382775e-03	k: 343	n:160000
Cons ci ratio: 3.875935e-02	ci left: 5.892170e-02	ci right 6.125677e-02	k: 9613	n:160000
KS ci ratio: 1.466840e-01	ci left: 4.117702e-03	ci right 4.775454e-03	k: 710	n:160000
TTF2   160000 perm   42 sec   (3799 perm/sec)   p_kst 4.437500e-03   p_cons 6.008125e-02   p_joint 2.143750e-03

Joint ci ratio: 8.287937e-02	ci left: 1.244963e-02	ci right 1.353178e-02	k: 2207	n:170000
Cons ci ratio: 3.757056e-02	ci left: 5.905056e-02	ci right 6.131741e-02	k: 10230	n:170000
KS ci ratio: 1.422512e-01	ci left: 4.130625e-03	ci right 4.768810e-03	k: 755	n:170000
TTF2   170000 perm   45 sec   (3743 perm/sec)   p_kst 4.441176e-03   p_cons 6.017647e-02   p_joint 1.298235e-02

Joint ci ratio: 8.614744e-02	ci left: 1.088205e-02	ci right 1.186711e-02	k: 2046	n:180000
Cons ci ratio: 3.648842e-02	ci left: 5.915506e-02	ci right 6.135913e-02	k: 10845	n:180000
KS ci ratio: 1.376805e-01	ci left: 4.174565e-03	ci right 4.797116e-03	k: 806	n:180000
TTF2   180000 perm   49 sec   (3689 perm/sec)   p_kst 4.477778e-03   p_cons 6.025000e-02   p_joint 1.136667e-02

Joint ci ratio: 8.870509e-02	ci left: 9.722169e-03	ci right 1.062971e-02	k: 1932	n:190000
Cons ci ratio: 3.556410e-02	ci left: 5.903018e-02	ci right 6.117274e-02	k: 11418	n:190000
KS ci ratio: 1.344716e-01	ci left: 4.153123e-03	ci right 4.756887e-03	k: 845	n:190000
TTF2   190000 perm   52 sec   (3637 perm/sec)   p_kst 4.447368e-03   p_cons 6.009474e-02   p_joint 1.016842e-02

Joint ci ratio: 8.785998e-02	ci left: 9.421801e-03	ci right 1.029249e-02	k: 1970	n:200000
Cons ci ratio: 3.466054e-02	ci left: 5.906722e-02	ci right 6.115556e-02	k: 12021	n:200000
KS ci ratio: 1.308107e-01	ci left: 4.177507e-03	ci right 4.766997e-03	k: 893	n:200000
TTF2   200000 perm   56 sec   (3587 perm/sec)   p_kst 4.465000e-03   p_cons 6.010500e-02   p_joint 9.850000e-03

Joint ci ratio: 9.438078e-02	ci left: 7.762906e-03	ci right 8.536478e-03	k: 1710	n:210000
Cons ci ratio: 3.372598e-02	ci left: 5.942259e-02	ci right 6.146575e-02	k: 12692	n:210000
KS ci ratio: 1.279805e-01	ci left: 4.162887e-03	ci right 4.736639e-03	k: 933	n:210000
TTF2   210000 perm   59 sec   (3536 perm/sec)   p_kst 4.442857e-03   p_cons 6.043810e-02   p_joint 8.142857e-03

Joint ci ratio: 9.764277e-02	ci left: 6.917464e-03	ci right 7.631974e-03	k: 1599	n:220000
Cons ci ratio: 3.292742e-02	ci left: 5.952533e-02	ci right 6.152264e-02	k: 13314	n:220000
KS ci ratio: 1.250044e-01	ci left: 4.171739e-03	ci right 4.732350e-03	k: 978	n:220000
TTF2   220000 perm   63 sec   (3487 perm/sec)   p_kst 4.445455e-03   p_cons 6.051818e-02   p_joint 7.268182e-03

Joint ci ratio: 9.523099e-02	ci left: 6.964636e-03	ci right 7.665258e-03	k: 1681	n:230000
Cons ci ratio: 3.219163e-02	ci left: 5.958944e-02	ci right 6.154339e-02	k: 13929	n:230000
KS ci ratio: 1.225276e-01	ci left: 4.158886e-03	ci right 4.705893e-03	k: 1018	n:230000
TTF2   230000 perm   67 sec   (3440 perm/sec)   p_kst 4.426087e-03   p_cons 6.056087e-02   p_joint 7.308696e-03

Joint ci ratio: 9.733631e-02	ci left: 6.385640e-03	ci right 7.043025e-03	k: 1610	n:240000
Cons ci ratio: 3.152267e-02	ci left: 5.957835e-02	ci right 6.149061e-02	k: 14527	n:240000
KS ci ratio: 1.204784e-01	ci left: 4.126996e-03	ci right 4.660082e-03	k: 1053	n:240000
TTF2   240000 perm   71 sec   (3394 perm/sec)   p_kst 4.387500e-03   p_cons 6.052917e-02   p_joint 6.708333e-03

Joint ci ratio: 1.060847e-01	ci left: 5.143730e-03	ci right 5.723826e-03	k: 1357	n:250000
Cons ci ratio: 3.088072e-02	ci left: 5.961620e-02	ci right 6.149001e-02	k: 15137	n:250000
KS ci ratio: 1.184740e-01	ci left: 4.101609e-03	ci right 4.621985e-03	k: 1089	n:250000
TTF2   250000 perm   75 sec   (3350 perm/sec)   p_kst 4.356000e-03   p_cons 6.054800e-02   p_joint 5.428000e-03

Joint ci ratio: 1.053959e-01	ci left: 5.013276e-03	ci right 5.574761e-03	k: 1375	n:260000
Cons ci ratio: 3.025805e-02	ci left: 5.972024e-02	ci right 6.155880e-02	k: 15765	n:260000
KS ci ratio: 1.161528e-01	ci left: 4.108120e-03	ci right 4.618410e-03	k: 1133	n:260000
TTF2   260000 perm   79 sec   (3300 perm/sec)   p_kst 4.357692e-03   p_cons 6.063462e-02   p_joint 5.288462e-03

Joint ci ratio: 1.019627e-01	ci left: 5.166742e-03	ci right 5.725436e-03	k: 1469	n:270000
Cons ci ratio: 2.964753e-02	ci left: 5.990886e-02	ci right 6.171539e-02	k: 16418	n:270000
KS ci ratio: 1.147481e-01	ci left: 4.056671e-03	ci right 4.554062e-03	k: 1161	n:270000
TTF2   270000 perm   83 sec   (3256 perm/sec)   p_kst 4.300000e-03   p_cons 6.080741e-02   p_joint 5.440741e-03

Joint ci ratio: 1.003388e-01	ci left: 5.149305e-03	ci right 5.696723e-03	k: 1517	n:280000
Cons ci ratio: 2.911158e-02	ci left: 5.993184e-02	ci right 6.170584e-02	k: 17028	n:280000
KS ci ratio: 1.131072e-01	ci left: 4.029754e-03	ci right 4.516309e-03	k: 1195	n:280000
TTF2   280000 perm   87 sec   (3215 perm/sec)   p_kst 4.267857e-03   p_cons 6.081429e-02   p_joint 5.417857e-03

Joint ci ratio: 1.006151e-01	ci left: 4.944823e-03	ci right 5.472036e-03	k: 1509	n:290000
Cons ci ratio: 2.863654e-02	ci left: 5.982334e-02	ci right 6.156476e-02	k: 17600	n:290000
KS ci ratio: 1.111722e-01	ci left: 4.031563e-03	ci right 4.509462e-03	k: 1237	n:290000
TTF2   290000 perm   91 sec   (3174 perm/sec)   p_kst 4.265517e-03   p_cons 6.068966e-02   p_joint 5.203448e-03

Joint ci ratio: 1.034141e-01	ci left: 4.520080e-03	ci right 5.016228e-03	k: 1429	n:300000
Cons ci ratio: 2.816257e-02	ci left: 5.980840e-02	ci right 6.152010e-02	k: 18198	n:300000
KS ci ratio: 1.088644e-01	ci left: 4.068987e-03	ci right 4.540668e-03	k: 1290	n:300000
TTF2   300000 perm   96 sec   (3134 perm/sec)   p_kst 4.300000e-03   p_cons 6.066000e-02   p_joint 4.763333e-03

Joint ci ratio: 1.020336e-01	ci left: 4.496843e-03	ci right 4.983455e-03	k: 1468	n:310000
Cons ci ratio: 2.772631e-02	ci left: 5.973375e-02	ci right 6.141641e-02	k: 18777	n:310000
KS ci ratio: 1.074601e-01	ci left: 4.044437e-03	ci right 4.506841e-03	k: 1324	n:310000
TTF2   310000 perm   100 sec   (3096 perm/sec)   p_kst 4.270968e-03   p_cons 6.057097e-02   p_joint 4.735484e-03

Joint ci ratio: 1.002735e-01	ci left: 4.514707e-03	ci right 4.994329e-03	k: 1520	n:320000
Cons ci ratio: 2.729470e-02	ci left: 5.972606e-02	ci right 6.138191e-02	k: 19376	n:320000
KS ci ratio: 1.056802e-01	ci left: 4.054926e-03	ci right 4.510373e-03	k: 1369	n:320000
TTF2   320000 perm   105 sec   (3059 perm/sec)   p_kst 4.278125e-03   p_cons 6.055000e-02   p_joint 4.750000e-03

Joint ci ratio: 1.011530e-01	ci left: 4.301071e-03	ci right 4.762242e-03	k: 1494	n:330000
Cons ci ratio: 2.688551e-02	ci left: 5.970699e-02	ci right 6.133710e-02	k: 19971	n:330000
KS ci ratio: 1.045438e-01	ci left: 4.020565e-03	ci right 4.466998e-03	k: 1399	n:330000
TTF2   330000 perm   109 sec   (3023 perm/sec)   p_kst 4.239394e-03   p_cons 6.051818e-02   p_joint 4.527273e-03

Joint ci ratio: 1.184882e-01	ci left: 3.018643e-03	ci right 3.401666e-03	k: 1090	n:340000
Cons ci ratio: 2.649486e-02	ci left: 5.968629e-02	ci right 6.129180e-02	k: 20565	n:340000
KS ci ratio: 1.031899e-01	ci left: 4.008308e-03	ci right 4.447267e-03	k: 1436	n:340000
TTF2   340000 perm   114 sec   (2989 perm/sec)   p_kst 4.223529e-03   p_cons 6.048529e-02   p_joint 3.205882e-03

Joint ci ratio: 1.166837e-01	ci left: 3.026682e-03	ci right 3.404474e-03	k: 1124	n:350000
Cons ci ratio: 2.612734e-02	ci left: 5.963854e-02	ci right 6.122018e-02	k: 21149	n:350000
KS ci ratio: 1.016797e-01	ci left: 4.013495e-03	ci right 4.446205e-03	k: 1479	n:350000
TTF2   350000 perm   118 sec   (2954 perm/sec)   p_kst 4.225714e-03   p_cons 6.042571e-02   p_joint 3.211429e-03

Joint ci ratio: 1.151587e-01	ci left: 3.023525e-03	ci right 3.395654e-03	k: 1154	n:360000
Cons ci ratio: 2.576902e-02	ci left: 5.961844e-02	ci right 6.117754e-02	k: 21742	n:360000
KS ci ratio: 1.002340e-01	ci left: 4.018438e-03	ci right 4.445158e-03	k: 1522	n:360000
TTF2   360000 perm   123 sec   (2921 perm/sec)   p_kst 4.227778e-03   p_cons 6.039444e-02   p_joint 3.205556e-03

Joint ci ratio: 9.113295e-02	ci left: 4.748847e-03	ci right 5.204905e-03	k: 1840	n:370000
Cons ci ratio: 2.542202e-02	ci left: 5.961300e-02	ci right 6.115065e-02	k: 22340	n:370000
KS ci ratio: 9.919865e-02	ci left: 3.994159e-03	ci right 4.413665e-03	k: 1554	n:370000
TTF2   370000 perm   128 sec   (2889 perm/sec)   p_kst 4.200000e-03   p_cons 6.037838e-02   p_joint 4.972973e-03

Outputting figure to mutsig2_images.part000000000184/TTF2.3_3581_370000_0.0042_0.060378_0.004973.png
                gene_name: TTF2
               theta_stop: 0.099 
                    nperm: 370000 
                     p_ks: 0.0042 
        ci_ks_bounds_left: 0.0040 
       ci_ks_bounds_right: 0.0044 
                   p_cons: 0.060 
      ci_cons_bounds_left: 0.060 
     ci_cons_bounds_right: 0.061 
                  p_joint: 0.0050 
     ci_joint_bounds_left: 0.0047 
    ci_joint_bounds_right: 0.0052 

Current progress: 44 percent done.
TTLL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.121749e-02	ci left: 3.598301e-01	ci right 3.788461e-01	k: 3693	n:10000
Cons ci ratio: 8.597494e-02	ci left: 1.646498e-01	ci right 1.795417e-01	k: 1720	n:10000
KS ci ratio: 4.862636e-02	ci left: 3.842059e-01	ci right 4.034560e-01	k: 3938	n:10000
TTLL3   10000 perm   2 sec   (5962 perm/sec)   p_kst 3.938000e-01   p_cons 1.720000e-01   p_joint 3.693000e-01

Outputting figure to mutsig2_images.part000000000184/TTLL3.3_2367_10000_0.3938_0.172_0.3693.png
                gene_name: TTLL3
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 47 percent done.
TTLL6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.916000e-02	ci left: 3.790301e-01	ci right 3.982348e-01	k: 3886	n:10000
Cons ci ratio: 1.133519e-02	ci left: 9.174977e-01	ci right 9.280545e-01	k: 9229	n:10000
KS ci ratio: 8.127917e-02	ci left: 1.809743e-01	ci right 1.964075e-01	k: 1886	n:10000
TTLL6   10000 perm   2 sec   (5730 perm/sec)   p_kst 1.886000e-01   p_cons 9.229000e-01   p_joint 3.886000e-01

Outputting figure to mutsig2_images.part000000000184/TTLL6.3_2817_10000_0.1886_0.9229_0.3886.png
                gene_name: TTLL6
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 49 percent done.
TTLL7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.169081e-02	ci left: 5.950381e-01	ci right 6.143009e-01	k: 6047	n:10000
KS ci ratio: 2.462640e-02	ci left: 7.080589e-01	ci right 7.258146e-01	k: 7170	n:10000
TTLL7   10000 perm   2 sec   (5547 perm/sec)   p_kst 7.170000e-01   p_cons 6.047000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000184/TTLL7.3_2744_10000_0.717_0.6047_1.png
                gene_name: TTLL7
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 51 percent done.
TTYH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.680584e-02	ci left: 5.215616e-01	ci right 5.412201e-01	k: 5314	n:10000
Cons ci ratio: 2.849127e-02	ci left: 6.448846e-01	ci right 6.636255e-01	k: 6543	n:10000
KS ci ratio: 5.128351e-02	ci left: 3.592335e-01	ci right 3.782430e-01	k: 3687	n:10000
TTYH1   10000 perm   2 sec   (6618 perm/sec)   p_kst 3.687000e-01   p_cons 6.543000e-01   p_joint 5.314000e-01

Outputting figure to mutsig2_images.part000000000184/TTYH1.3_1485_10000_0.3687_0.6543_0.5314.png
                gene_name: TTYH1
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 53 percent done.
TUBAL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.107643e-01	ci left: 1.051021e-01	ci right 1.175253e-01	k: 1112	n:10000
Cons ci ratio: 5.085669e-02	ci left: 3.631119e-01	ci right 3.821624e-01	k: 3726	n:10000
KS ci ratio: 1.257984e-01	ci left: 8.290659e-02	ci right 9.413446e-02	k: 884	n:10000
TUBAL3   10000 perm   2 sec   (6089 perm/sec)   p_kst 8.840000e-02   p_cons 3.726000e-01   p_joint 1.112000e-01

Joint ci ratio: 6.181659e-02	ci left: 1.622002e-01	ci right 1.725967e-01	k: 3347	n:20000
Cons ci ratio: 3.706675e-02	ci left: 3.519493e-01	ci right 3.652918e-01	k: 7172	n:20000
KS ci ratio: 8.889963e-02	ci left: 8.464776e-02	ci right 9.257232e-02	k: 1771	n:20000
TUBAL3   20000 perm   4 sec   (5460 perm/sec)   p_kst 8.855000e-02   p_cons 3.586000e-01   p_joint 1.673500e-01

Outputting figure to mutsig2_images.part000000000184/TUBAL3.3_1357_20000_0.08855_0.3586_0.16735.png
                gene_name: TUBAL3
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.089 
        ci_ks_bounds_left: 0.085 
       ci_ks_bounds_right: 0.093 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 56 percent done.
TUBGCP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.120495e-02	ci left: 4.651709e-01	ci right 4.848436e-01	k: 4750	n:10000
KS ci ratio: 3.696130e-02	ci left: 5.194597e-01	ci right 5.391232e-01	k: 5293	n:10000
TUBGCP6   10000 perm   2 sec   (4632 perm/sec)   p_kst 5.293000e-01   p_cons 4.750000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000184/TUBGCP6.3_5560_10000_0.5293_0.475_1.png
                gene_name: TUBGCP6
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.48 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 58 percent done.
TULP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.065741e-02	ci left: 2.855770e-01	ci right 3.035428e-01	k: 2945	n:10000
Cons ci ratio: 1.621032e-02	ci left: 8.469262e-01	ci right 8.608669e-01	k: 8540	n:10000
KS ci ratio: 1.250251e-01	ci left: 8.387799e-02	ci right 9.516246e-02	k: 894	n:10000
TULP2   10000 perm   2 sec   (6112 perm/sec)   p_kst 8.940000e-02   p_cons 8.540000e-01   p_joint 2.945000e-01

Joint ci ratio: 4.489348e-02	ci left: 2.697630e-01	ci right 2.822021e-01	k: 5519	n:20000
Cons ci ratio: 1.160146e-02	ci left: 8.459383e-01	ci right 8.558595e-01	k: 17019	n:20000
KS ci ratio: 8.773658e-02	ci left: 8.675464e-02	ci right 9.476480e-02	k: 1814	n:20000
TULP2   20000 perm   4 sec   (5458 perm/sec)   p_kst 9.070000e-02   p_cons 8.509500e-01   p_joint 2.759500e-01

Outputting figure to mutsig2_images.part000000000184/TULP2.3_1611_20000_0.0907_0.85095_0.27595.png
                gene_name: TULP2
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.091 
        ci_ks_bounds_left: 0.087 
       ci_ks_bounds_right: 0.095 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 60 percent done.
TWISTNB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.526021e-02	ci left: 5.428906e-01	ci right 5.624787e-01	k: 5527	n:10000
KS ci ratio: 3.046495e-02	ci left: 6.138185e-01	ci right 6.329096e-01	k: 6234	n:10000
TWISTNB   10000 perm   1 sec   (7039 perm/sec)   p_kst 6.234000e-01   p_cons 5.527000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000184/TWISTNB.3_1033_10000_0.6234_0.5527_1.png
                gene_name: TWISTNB
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 63 percent done.
TXK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.157165e-02	ci left: 5.968452e-01	ci right 6.160928e-01	k: 6065	n:10000
Cons ci ratio: 6.435754e-02	ci left: 2.618113e-01	ci right 2.793225e-01	k: 2705	n:10000
KS ci ratio: 8.857514e-03	ci left: 9.471062e-01	ci right 9.556284e-01	k: 9515	n:10000
TXK   10000 perm   2 sec   (6232 perm/sec)   p_kst 9.515000e-01   p_cons 2.705000e-01   p_joint 6.065000e-01

Outputting figure to mutsig2_images.part000000000184/TXK.3_1644_10000_0.9515_0.2705_0.6065.png
                gene_name: TXK
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 65 percent done.
TXLNG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.345253e-02	ci left: 7.276467e-01	ci right 7.450155e-01	k: 7364	n:10000
KS ci ratio: 2.435966e-02	ci left: 7.124997e-01	ci right 7.301712e-01	k: 7214	n:10000
TXLNG   10000 perm   2 sec   (6122 perm/sec)   p_kst 7.214000e-01   p_cons 7.364000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000184/TXLNG.3_1627_10000_0.7214_0.7364_1.png
                gene_name: TXLNG
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
TTC7A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.193694e-02	ci left: 9.095681e-01	ci right 9.205886e-01	k: 9152	n:10000
KS ci ratio: 4.579340e-02	ci left: 4.130914e-01	ci right 4.325536e-01	k: 4228	n:10000
TTC7A   10000 perm   2 sec   (5905 perm/sec)   p_kst 4.228000e-01   p_cons 9.152000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000184/TTC7A.2_2657_10000_0.4228_0.9152_1.png
                gene_name: TTC7A
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
TTC7B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.734125e-02	ci left: 5.143558e-01	ci right 5.340301e-01	k: 5242	n:10000
KS ci ratio: 2.053964e-02	ci left: 7.764103e-01	ci right 7.926236e-01	k: 7846	n:10000
TTC7B   10000 perm   2 sec   (5919 perm/sec)   p_kst 7.846000e-01   p_cons 5.242000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000184/TTC7B.2_2612_10000_0.7846_0.5242_1.png
                gene_name: TTC7B
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
TTLL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.641468e-02	ci left: 6.785132e-01	ci right 6.967774e-01	k: 6877	n:10000
KS ci ratio: 1.056065e-02	ci left: 9.273022e-01	ci right 9.372442e-01	k: 9324	n:10000
TTLL1   10000 perm   2 sec   (6553 perm/sec)   p_kst 9.324000e-01   p_cons 6.877000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000184/TTLL1.2_1308_10000_0.9324_0.6877_1.png
                gene_name: TTLL1
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 74 percent done.
TTLL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.911583e-02	ci left: 4.911511e-01	ci right 5.108483e-01	k: 5010	n:10000
Cons ci ratio: 7.166236e-02	ci left: 2.219788e-01	ci right 2.385786e-01	k: 2302	n:10000
KS ci ratio: 1.379167e-02	ci left: 8.836011e-01	ci right 8.959708e-01	k: 8899	n:10000
TTLL5   10000 perm   2 sec   (5441 perm/sec)   p_kst 8.899000e-01   p_cons 2.302000e-01   p_joint 5.010000e-01

Outputting figure to mutsig2_images.part000000000184/TTLL5.2_3970_10000_0.8899_0.2302_0.501.png
                gene_name: TTLL5
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 77 percent done.
TTR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.609790e-02	ci left: 2.016579e-01	ci right 2.177115e-01	k: 2096	n:10000
Cons ci ratio: 1.075815e-01	ci left: 1.108601e-01	ci right 1.235638e-01	k: 1171	n:10000
KS ci ratio: 3.144615e-02	ci left: 5.987528e-01	ci right 6.179840e-01	k: 6084	n:10000
TTR   10000 perm   1 sec   (7173 perm/sec)   p_kst 6.084000e-01   p_cons 1.171000e-01   p_joint 2.096000e-01

Joint ci ratio: 5.338344e-02	ci left: 2.066497e-01	ci right 2.180341e-01	k: 4246	n:20000
Cons ci ratio: 7.536455e-02	ci left: 1.146416e-01	ci right 1.236695e-01	k: 2382	n:20000
KS ci ratio: 2.226729e-02	ci left: 6.009430e-01	ci right 6.145256e-01	k: 12155	n:20000
TTR   20000 perm   3 sec   (6328 perm/sec)   p_kst 6.077500e-01   p_cons 1.191000e-01   p_joint 2.123000e-01

Outputting figure to mutsig2_images.part000000000184/TTR.2_460_20000_0.60775_0.1191_0.2123.png
                gene_name: TTR
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 79 percent done.
TUBA1C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.345173e-02	ci left: 8.885187e-01	ci right 9.006503e-01	k: 8947	n:10000
Cons ci ratio: 6.388808e-02	ci left: 2.646814e-01	ci right 2.822508e-01	k: 2734	n:10000
KS ci ratio: 3.740866e-02	ci left: 5.134552e-01	ci right 5.331312e-01	k: 5233	n:10000
TUBA1C   10000 perm   2 sec   (6579 perm/sec)   p_kst 5.233000e-01   p_cons 2.734000e-01   p_joint 8.947000e-01

Outputting figure to mutsig2_images.part000000000184/TUBA1C.2_1366_10000_0.5233_0.2734_0.8947.png
                gene_name: TUBA1C
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 81 percent done.
TUBA3D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.120740e-02	ci left: 9.191472e-01	ci right 9.296040e-01	k: 9245	n:10000
Cons ci ratio: 2.081274e-02	ci left: 7.718513e-01	ci right 7.881853e-01	k: 7801	n:10000
KS ci ratio: 5.283892e-02	ci left: 3.455153e-01	ci right 3.643693e-01	k: 3549	n:10000
TUBA3D   10000 perm   1 sec   (6711 perm/sec)   p_kst 3.549000e-01   p_cons 7.801000e-01   p_joint 9.245000e-01

Outputting figure to mutsig2_images.part000000000184/TUBA3D.2_1373_10000_0.3549_0.7801_0.9245.png
                gene_name: TUBA3D
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 84 percent done.
TUBB2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.792416e-02	ci left: 8.195432e-01	ci right 8.344658e-01	k: 8271	n:10000
KS ci ratio: 7.562442e-03	ci left: 9.603708e-01	ci right 9.677557e-01	k: 9642	n:10000
TUBB2A   10000 perm   2 sec   (6638 perm/sec)   p_kst 9.642000e-01   p_cons 8.271000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000184/TUBB2A.2_1354_10000_0.9642_0.8271_1.png
                gene_name: TUBB2A
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
TUBB3
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 88 percent done.
TUBB4Q
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.148685e-02	ci left: 4.617755e-01	ci right 4.814411e-01	k: 4716	n:10000
Cons ci ratio: 3.373175e-02	ci left: 5.647390e-01	ci right 5.842175e-01	k: 5745	n:10000
KS ci ratio: 5.583028e-02	ci left: 3.208839e-01	ci right 3.394152e-01	k: 3301	n:10000
TUBB4Q   10000 perm   2 sec   (6653 perm/sec)   p_kst 3.301000e-01   p_cons 5.745000e-01   p_joint 4.716000e-01

Outputting figure to mutsig2_images.part000000000184/TUBB4Q.2_1318_10000_0.3301_0.5745_0.4716.png
                gene_name: TUBB4Q
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 91 percent done.
TUBG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.898779e-03	ci left: 9.881795e-01	ci right 9.921271e-01	k: 9903	n:10000
Cons ci ratio: 3.102546e-02	ci left: 6.051797e-01	ci right 6.243534e-01	k: 6148	n:10000
KS ci ratio: 1.823653e-02	ci left: 8.144611e-01	ci right 8.295509e-01	k: 8221	n:10000
TUBG2   10000 perm   2 sec   (6057 perm/sec)   p_kst 8.221000e-01   p_cons 6.148000e-01   p_joint 9.903000e-01

Outputting figure to mutsig2_images.part000000000184/TUBG2.2_1400_10000_0.8221_0.6148_0.9903.png
                gene_name: TUBG2
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 93 percent done.
TUBGCP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.253417e-02	ci left: 9.014466e-01	ci right 9.129149e-01	k: 9073	n:10000
Cons ci ratio: 1.309804e-01	ci left: 7.679184e-02	ci right 8.765300e-02	k: 821	n:10000
KS ci ratio: 7.628204e-02	ci left: 2.008694e-01	ci right 2.169006e-01	k: 2088	n:10000
TUBGCP4   10000 perm   2 sec   (6112 perm/sec)   p_kst 2.088000e-01   p_cons 8.210000e-02   p_joint 9.073000e-01

Joint ci ratio: 1.804412e-02	ci left: 6.959592e-01	ci right 7.086819e-01	k: 14047	n:20000
Cons ci ratio: 9.120586e-02	ci left: 8.068090e-02	ci right 8.844038e-02	k: 1690	n:20000
KS ci ratio: 5.385872e-02	ci left: 2.037291e-01	ci right 2.150555e-01	k: 4187	n:20000
TUBGCP4   20000 perm   4 sec   (5411 perm/sec)   p_kst 2.093500e-01   p_cons 8.450000e-02   p_joint 7.023500e-01

Outputting figure to mutsig2_images.part000000000184/TUBGCP4.2_2073_20000_0.20935_0.0845_0.70235.png
                gene_name: TUBGCP4
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.085 
      ci_cons_bounds_left: 0.081 
     ci_cons_bounds_right: 0.088 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.71 

Current progress: 95 percent done.
TUSC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.682907e-01	ci left: 1.809309e-02	ci right 2.379077e-02	k: 208	n:10000
Cons ci ratio: 1.510425e-01	ci left: 5.831582e-02	ci right 6.794061e-02	k: 630	n:10000
KS ci ratio: 7.817824e-02	ci left: 1.929864e-01	ci right 2.087882e-01	k: 2008	n:10000
TUSC3   10000 perm   1 sec   (6844 perm/sec)   p_kst 2.008000e-01   p_cons 6.300000e-02   p_joint 2.080000e-02

Joint ci ratio: 2.405811e-01	ci left: 1.152325e-02	ci right 1.472062e-02	k: 261	n:20000
Cons ci ratio: 1.085134e-01	ci left: 5.791700e-02	ci right 6.461125e-02	k: 1224	n:20000
KS ci ratio: 5.476978e-02	ci left: 1.982851e-01	ci right 2.095011e-01	k: 4077	n:20000
TUSC3   20000 perm   3 sec   (6106 perm/sec)   p_kst 2.038500e-01   p_cons 6.120000e-02   p_joint 1.305000e-02

Joint ci ratio: 1.761816e-01	ci left: 1.480177e-02	ci right 1.769301e-02	k: 486	n:30000
Cons ci ratio: 8.840946e-02	ci left: 5.877467e-02	ci right 6.424396e-02	k: 1844	n:30000
KS ci ratio: 4.454578e-02	ci left: 2.005761e-01	ci right 2.097478e-01	k: 6154	n:30000
TUSC3   30000 perm   5 sec   (5821 perm/sec)   p_kst 2.051333e-01   p_cons 6.146667e-02   p_joint 1.620000e-02

Joint ci ratio: 1.761795e-01	ci left: 1.114722e-02	ci right 1.332445e-02	k: 488	n:40000
Cons ci ratio: 7.648233e-02	ci left: 5.926324e-02	ci right 6.400065e-02	k: 2464	n:40000
KS ci ratio: 3.864204e-02	ci left: 2.006557e-01	ci right 2.085872e-01	k: 8184	n:40000
TUSC3   40000 perm   7 sec   (5628 perm/sec)   p_kst 2.046000e-01   p_cons 6.160000e-02   p_joint 1.220000e-02

Joint ci ratio: 1.589347e-01	ci left: 1.106401e-02	ci right 1.299327e-02	k: 600	n:50000
Cons ci ratio: 6.875647e-02	ci left: 5.893742e-02	ci right 6.315372e-02	k: 3051	n:50000
KS ci ratio: 3.473387e-02	ci left: 1.994817e-01	ci right 2.065529e-01	k: 10150	n:50000
TUSC3   50000 perm   9 sec   (5476 perm/sec)   p_kst 2.030000e-01   p_cons 6.102000e-02   p_joint 1.200000e-02

Joint ci ratio: 1.433076e-01	ci left: 1.143338e-02	ci right 1.321426e-02	k: 738	n:60000
Cons ci ratio: 6.269662e-02	ci left: 5.924572e-02	ci right 6.309686e-02	k: 3669	n:60000
KS ci ratio: 3.171770e-02	ci left: 1.996882e-01	ci right 2.061405e-01	k: 12174	n:60000
TUSC3   60000 perm   11 sec   (5338 perm/sec)   p_kst 2.029000e-01   p_cons 6.115000e-02   p_joint 1.230000e-02

Joint ci ratio: 1.324570e-01	ci left: 1.153806e-02	ci right 1.318845e-02	k: 864	n:70000
Cons ci ratio: 5.806511e-02	ci left: 5.935086e-02	ci right 6.291420e-02	k: 4278	n:70000
KS ci ratio: 2.942751e-02	ci left: 1.992441e-01	ci right 2.052092e-01	k: 14155	n:70000
TUSC3   70000 perm   13 sec   (5213 perm/sec)   p_kst 2.022143e-01   p_cons 6.111429e-02   p_joint 1.234286e-02

Joint ci ratio: 1.247724e-01	ci left: 1.142654e-02	ci right 1.295914e-02	k: 974	n:80000
Cons ci ratio: 5.427531e-02	ci left: 5.954870e-02	ci right 6.288321e-02	k: 4896	n:80000
KS ci ratio: 2.760103e-02	ci left: 1.985758e-01	ci right 2.041459e-01	k: 16108	n:80000
TUSC3   80000 perm   16 sec   (5091 perm/sec)   p_kst 2.013500e-01   p_cons 6.120000e-02   p_joint 1.217500e-02

Joint ci ratio: 1.177930e-01	ci left: 1.143906e-02	ci right 1.288153e-02	k: 1093	n:90000
Cons ci ratio: 5.135586e-02	ci left: 5.923644e-02	ci right 6.236972e-02	k: 5471	n:90000
KS ci ratio: 2.601948e-02	ci left: 1.987729e-01	ci right 2.040241e-01	k: 18125	n:90000
TUSC3   90000 perm   18 sec   (4977 perm/sec)   p_kst 2.013889e-01   p_cons 6.078889e-02   p_joint 1.214444e-02

Joint ci ratio: 1.129564e-01	ci left: 1.122738e-02	ci right 1.258115e-02	k: 1189	n:100000
Cons ci ratio: 4.866935e-02	ci left: 5.943542e-02	ci right 6.241011e-02	k: 6091	n:100000
KS ci ratio: 2.470729e-02	ci left: 1.986095e-01	ci right 2.035879e-01	k: 20109	n:100000
TUSC3   100000 perm   21 sec   (4877 perm/sec)   p_kst 2.010900e-01   p_cons 6.091000e-02   p_joint 1.189000e-02

Joint ci ratio: 1.081606e-01	ci left: 1.116136e-02	ci right 1.244639e-02	k: 1297	n:110000
Cons ci ratio: 4.649759e-02	ci left: 5.927800e-02	ci right 6.210886e-02	k: 6675	n:110000
KS ci ratio: 2.358485e-02	ci left: 1.983546e-01	ci right 2.030976e-01	k: 22079	n:110000
TUSC3   110000 perm   23 sec   (4783 perm/sec)   p_kst 2.007182e-01   p_cons 6.068182e-02   p_joint 1.179091e-02

Joint ci ratio: 1.036300e-01	ci left: 1.117232e-02	ci right 1.240144e-02	k: 1413	n:120000
Cons ci ratio: 4.463533e-02	ci left: 5.904211e-02	ci right 6.174585e-02	k: 7246	n:120000
KS ci ratio: 2.258035e-02	ci left: 1.984618e-01	ci right 2.030026e-01	k: 24087	n:120000
TUSC3   120000 perm   26 sec   (4693 perm/sec)   p_kst 2.007250e-01   p_cons 6.038333e-02   p_joint 1.177500e-02

Joint ci ratio: 9.929705e-02	ci left: 1.125758e-02	ci right 1.244127e-02	k: 1539	n:130000
Cons ci ratio: 4.306528e-02	ci left: 5.862363e-02	ci right 6.121142e-02	k: 7788	n:130000
KS ci ratio: 2.171863e-02	ci left: 1.981962e-01	ci right 2.025556e-01	k: 26048	n:130000
TUSC3   130000 perm   28 sec   (4610 perm/sec)   p_kst 2.003692e-01   p_cons 5.990769e-02   p_joint 1.183846e-02

Outputting figure to mutsig2_images.part000000000184/TUSC3.2_1107_130000_0.20037_0.059908_0.011838.png
                gene_name: TUSC3
               theta_stop: 0.099 
                    nperm: 130000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.060 
      ci_cons_bounds_left: 0.059 
     ci_cons_bounds_right: 0.061 
                  p_joint: 0.012 
     ci_joint_bounds_left: 0.011 
    ci_joint_bounds_right: 0.012 

Current progress: 98 percent done.
TXNDC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.194188e-03	ci left: 9.638355e-01	ci right 9.708888e-01	k: 9675	n:10000
KS ci ratio: 5.005077e-02	ci left: 3.705722e-01	ci right 3.896977e-01	k: 3801	n:10000
TXNDC2   10000 perm   2 sec   (6445 perm/sec)   p_kst 3.801000e-01   p_cons 9.675000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000184/TXNDC2.2_1670_10000_0.3801_0.9675_1.png
                gene_name: TXNDC2
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000184
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 184 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1726>
Subject: Job 8004677: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1726>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000185> was used as the working directory.
Started at Sun Nov 11 15:23:55 2012
Results reported at Sun Nov 11 18:49:51 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000185.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000185.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 185  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000185.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  12458.13 sec.
    Max Memory :      4820 MB
    Max Swap   :      7196 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
185
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 185
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 185: processing genes 16647 - 16737
Calculating significance of each gene.
Using projection method.
16647	TXNDC9	3.262246e-01
16648	TXNIP	1
16649	TXNL1	4.531025e-01
16650	TXNL4A	1
16651	TXNL4B	1.858140e-01
16652	TXNRD1	6.530048e-01
16653	TXNRD2	6.995370e-01
16654	TXNRD3IT1	1
16655	TYK2	1.418498e-01
16656	TYMP	1
16657	TYMS	1
16658	TYR	6.637947e-04
16659	TYRO3	1
16660	TYROBP	1.504000e-02
16661	TYRP1	7.111652e-01
16662	TYSND1	5.464320e-01
16663	TYW1	7.002480e-02
16664	TYW1B	1
16665	TYW3	1.689449e-01
16666	U2AF1	1
16667	U2AF1L4	1
16668	U2AF2	7.868655e-01
16669	UACA	1
16670	UAP1	6.211385e-01
16671	UAP1L1	1
16672	UBA1	6.910722e-01
16673	UBA2	5.873627e-01
16674	UBA3	1.971156e-01
16675	UBA5	1
16676	UBA52	1
16677	UBA6	9.802598e-01
16678	UBA7	1
16679	UBAC1	2.694373e-01
16680	UBAC2	6.288652e-01
16681	UBAP1	8.989489e-01
16682	UBAP2	1
16683	UBAP2L	9.787265e-01
16684	UBASH3A	8.475819e-01
16685	UBASH3B	5.916532e-01
16686	UBB	1.796226e-01
16687	UBC	1
16688	UBD	5.153238e-01
16689	UBE2A	7.771959e-02
16690	UBE2B	1
16691	UBE2C	4.411918e-01
16692	UBE2CBP	1
16693	UBE2D1	3.143464e-01
16694	UBE2D2	1.237293e-01
16695	UBE2D3	1
16696	UBE2D4	1
16697	UBE2E1	1
16698	UBE2E2	1.007474e-01
16699	UBE2E3	1.811842e-01
16700	UBE2F	1
16701	UBE2G1	2.996780e-01
16702	UBE2G2	5.208980e-01
16703	UBE2H	1
16704	UBE2I	1
16705	UBE2J1	4.085578e-01
16706	UBE2J2	1
16707	UBE2K	1
16708	UBE2L3	1
16709	UBE2L6	4.259111e-01
16710	UBE2M	3.294276e-01
16711	UBE2N	1
16712	UBE2NL	1
16713	UBE2O	9.592667e-01
16714	UBE2Q1	5.192974e-01
16715	UBE2Q2	5.223165e-01
16716	UBE2R2	5.796992e-01
16717	UBE2S	1
16718	UBE2T	4.872242e-01
16719	UBE2U	3.706329e-01
16720	UBE2V1	1
16721	UBE2V2	3.975008e-01
16722	UBE2W	1
16723	UBE2Z	4.514436e-01
16724	UBE3A	1.196296e-01
16725	UBE3B	6.281424e-01
16726	UBE3C	8.863253e-01
16727	UBE4A	1
16728	UBE4B	9.196647e-01
16729	UBFD1	1
16730	UBIAD1	1
16731	UBL3	1.955256e-01
16732	UBL4A	4.070544e-01
16733	UBL4B	1
16734	UBL5	1
16735	UBL7	6.980088e-01
16736	UBLCP1	1
16737	UBN1	8.187780e-01
Done

Running MutSig 2:
Scatter job 185: processing genes 16647 - 16737
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
TYR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.250783e-02	ci left: 4.496954e-01	ci right 4.693282e-01	k: 4595	n:10000
Cons ci ratio: 3.458089e-02	ci left: 5.525096e-01	ci right 5.720541e-01	k: 5623	n:10000
KS ci ratio: 6.390416e-02	ci left: 2.645824e-01	ci right 2.821498e-01	k: 2733	n:10000
TYR   10000 perm   2 sec   (5903 perm/sec)   p_kst 2.733000e-01   p_cons 5.623000e-01   p_joint 4.595000e-01

Outputting figure to mutsig2_images.part000000000185/TYR.10_1610_10000_0.2733_0.5623_0.4595.png
                gene_name: TYR
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 3 percent done.
TYK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.184094e-02	ci left: 1.789079e-01	ci right 1.942751e-01	k: 1865	n:10000
Cons ci ratio: 8.263127e-02	ci left: 1.760548e-01	ci right 1.913299e-01	k: 1836	n:10000
KS ci ratio: 7.417707e-02	ci left: 2.101378e-01	ci right 2.264266e-01	k: 2182	n:10000
TYK2   10000 perm   2 sec   (5367 perm/sec)   p_kst 2.182000e-01   p_cons 1.836000e-01   p_joint 1.865000e-01

Outputting figure to mutsig2_images.part000000000185/TYK2.8_3656_10000_0.2182_0.1836_0.1865.png
                gene_name: TYK2
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 6 percent done.
TYW1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.771079e-02	ci left: 8.230004e-01	ci right 8.378066e-01	k: 8305	n:10000
Cons ci ratio: 3.496175e-02	ci left: 5.470984e-01	ci right 5.666684e-01	k: 5569	n:10000
KS ci ratio: 2.522805e-02	ci left: 6.980709e-01	ci right 7.160083e-01	k: 7071	n:10000
TYW1   10000 perm   2 sec   (5740 perm/sec)   p_kst 7.071000e-01   p_cons 5.569000e-01   p_joint 8.305000e-01

Outputting figure to mutsig2_images.part000000000185/TYW1.6_2263_10000_0.7071_0.5569_0.8305.png
                gene_name: TYW1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 9 percent done.
UBE3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.453543e-02	ci left: 7.095727e-01	ci right 7.272999e-01	k: 7185	n:10000
Cons ci ratio: 6.784099e-02	ci left: 2.417346e-01	ci right 2.588111e-01	k: 2502	n:10000
KS ci ratio: 2.204644e-02	ci left: 7.512008e-01	ci right 7.680477e-01	k: 7597	n:10000
UBE3A   10000 perm   2 sec   (6029 perm/sec)   p_kst 7.597000e-01   p_cons 2.502000e-01   p_joint 7.185000e-01

Outputting figure to mutsig2_images.part000000000185/UBE3A.6_2696_10000_0.7597_0.2502_0.7185.png
                gene_name: UBE3A
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 12 percent done.
TYRO3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.257984e-01	ci left: 8.290659e-02	ci right 9.413446e-02	k: 884	n:10000
Cons ci ratio: 2.177074e-01	ci left: 2.797424e-02	ci right 3.490226e-02	k: 313	n:10000
KS ci ratio: 6.658135e-02	ci left: 2.487538e-01	ci right 2.659878e-01	k: 2573	n:10000
TYRO3   10000 perm   2 sec   (5707 perm/sec)   p_kst 2.573000e-01   p_cons 3.130000e-02   p_joint 8.840000e-02

Joint ci ratio: 1.136954e-01	ci left: 5.290189e-02	ci right 5.932793e-02	k: 1121	n:20000
Cons ci ratio: 1.601038e-01	ci left: 2.676609e-02	ci right 3.147214e-02	k: 581	n:20000
KS ci ratio: 4.719777e-02	ci left: 2.503593e-01	ci right 2.625116e-01	k: 5128	n:20000
TYRO3   20000 perm   4 sec   (5226 perm/sec)   p_kst 2.564000e-01   p_cons 2.905000e-02   p_joint 5.605000e-02

Joint ci ratio: 9.213864e-02	ci left: 5.427240e-02	ci right 5.954716e-02	k: 1706	n:30000
Cons ci ratio: 1.318969e-01	ci left: 2.671071e-02	ci right 3.051465e-02	k: 857	n:30000
KS ci ratio: 3.855208e-02	ci left: 2.513336e-01	ci right 2.612470e-01	k: 7688	n:30000
TYRO3   30000 perm   6 sec   (5038 perm/sec)   p_kst 2.562667e-01   p_cons 2.856667e-02   p_joint 5.686667e-02

Joint ci ratio: 7.152284e-02	ci left: 6.734629e-02	ci right 7.236637e-02	k: 2793	n:40000
Cons ci ratio: 1.147438e-01	ci left: 2.672103e-02	ci right 2.999792e-02	k: 1133	n:40000
KS ci ratio: 3.338493e-02	ci left: 2.520268e-01	ci right 2.606086e-01	k: 10252	n:40000
TYRO3   40000 perm   8 sec   (4891 perm/sec)   p_kst 2.563000e-01   p_cons 2.832500e-02   p_joint 6.982500e-02

Joint ci ratio: 6.617328e-02	ci left: 6.340577e-02	ci right 6.776483e-02	k: 3278	n:50000
Cons ci ratio: 1.020941e-01	ci left: 2.717594e-02	ci right 3.011913e-02	k: 1431	n:50000
KS ci ratio: 2.953537e-02	ci left: 2.566569e-01	ci right 2.643710e-01	k: 13025	n:50000
TYRO3   50000 perm   10 sec   (4802 perm/sec)   p_kst 2.605000e-01   p_cons 2.862000e-02   p_joint 6.556000e-02

Joint ci ratio: 6.133718e-02	ci left: 6.177512e-02	ci right 6.570054e-02	k: 3823	n:60000
Cons ci ratio: 9.332194e-02	ci left: 2.723195e-02	ci right 2.991391e-02	k: 1713	n:60000
KS ci ratio: 2.692612e-02	ci left: 2.575058e-01	ci right 2.645507e-01	k: 15661	n:60000
TYRO3   60000 perm   13 sec   (4542 perm/sec)   p_kst 2.610167e-01   p_cons 2.855000e-02   p_joint 6.371667e-02

Outputting figure to mutsig2_images.part000000000185/TYRO3.5_2749_60000_0.26102_0.02855_0.063717.png
                gene_name: TYRO3
               theta_stop: 0.093 
                    nperm: 60000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.029 
      ci_cons_bounds_left: 0.027 
     ci_cons_bounds_right: 0.030 
                  p_joint: 0.064 
     ci_joint_bounds_left: 0.062 
    ci_joint_bounds_right: 0.066 

Current progress: 16 percent done.
UBE3C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.765680e-02	ci left: 5.101534e-01	ci right 5.298350e-01	k: 5200	n:10000
KS ci ratio: 2.064893e-02	ci left: 7.745865e-01	ci right 7.908485e-01	k: 7828	n:10000
UBE3C   10000 perm   2 sec   (5343 perm/sec)   p_kst 7.828000e-01   p_cons 5.200000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000185/UBE3C.5_3344_10000_0.7828_0.52_1.png
                gene_name: UBE3C
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 19 percent done.
UBAP2L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.177092e-01	ci left: 4.232871e-03	ci right 7.265981e-03	k: 56	n:10000
Cons ci ratio: 2.778304e-02	ci left: 6.562561e-01	ci right 6.748474e-01	k: 6656	n:10000
KS ci ratio: 1.959510e+00	ci left: 6.187149e-05	ci right 8.764745e-04	k: 3	n:10000
UBAP2L   10000 perm   2 sec   (6097 perm/sec)   p_kst 3.000000e-04   p_cons 6.656000e-01   p_joint 5.600000e-03

Joint ci ratio: 7.151360e-01	ci left: 9.712961e-04	ci right 2.081783e-03	k: 29	n:20000
Cons ci ratio: 1.964190e-02	ci left: 6.591133e-01	ci right 6.722385e-01	k: 13314	n:20000
KS ci ratio: 1.752814e+00	ci left: 5.449587e-05	ci right 5.119995e-04	k: 4	n:20000
UBAP2L   20000 perm   4 sec   (5432 perm/sec)   p_kst 2.000000e-04   p_cons 6.657000e-01   p_joint 1.450000e-03

Joint ci ratio: 8.354264e-01	ci left: 4.333616e-04	ci right 1.069826e-03	k: 21	n:30000
Cons ci ratio: 1.602214e-02	ci left: 6.607643e-01	ci right 6.714702e-01	k: 19984	n:30000
KS ci ratio: 1.600147e+00	ci left: 5.411836e-05	ci right 3.889012e-04	k: 5	n:30000
UBAP2L   30000 perm   6 sec   (5190 perm/sec)   p_kst 1.666667e-04   p_cons 6.661333e-01   p_joint 7.000000e-04

Joint ci ratio: 7.685158e-01	ci left: 4.045066e-04	ci right 9.224860e-04	k: 25	n:40000
Cons ci ratio: 1.384552e-02	ci left: 6.624573e-01	ci right 6.717184e-01	k: 26684	n:40000
KS ci ratio: 1.385773e+00	ci left: 7.036188e-05	ci right 3.605334e-04	k: 7	n:40000
UBAP2L   40000 perm   8 sec   (5039 perm/sec)   p_kst 1.750000e-04   p_cons 6.671000e-01   p_joint 6.250000e-04

Joint ci ratio: 2.712345e-01	ci left: 3.596140e-03	ci right 4.742604e-03	k: 207	n:50000
Cons ci ratio: 1.239222e-02	ci left: 6.626489e-01	ci right 6.709318e-01	k: 33340	n:50000
KS ci ratio: 1.131459e+00	ci left: 1.098282e-04	ci right 3.936066e-04	k: 11	n:50000
UBAP2L   50000 perm   10 sec   (4894 perm/sec)   p_kst 2.200000e-04   p_cons 6.668000e-01   p_joint 4.140000e-03

Joint ci ratio: 3.321019e-01	ci left: 1.932621e-03	ci right 2.716762e-03	k: 138	n:60000
Cons ci ratio: 1.131635e-02	ci left: 6.628617e-01	ci right 6.704222e-01	k: 39999	n:60000
KS ci ratio: 1.131484e+00	ci left: 9.152278e-05	ci right 3.280102e-04	k: 11	n:60000
UBAP2L   60000 perm   12 sec   (4816 perm/sec)   p_kst 1.833333e-04   p_cons 6.666500e-01   p_joint 2.300000e-03

Joint ci ratio: 3.274695e-01	ci left: 1.708910e-03	ci right 2.390568e-03	k: 142	n:70000
Cons ci ratio: 1.049427e-02	ci left: 6.624062e-01	ci right 6.694086e-01	k: 46614	n:70000
KS ci ratio: 1.047552e+00	ci left: 9.888862e-05	ci right 3.175561e-04	k: 13	n:70000
UBAP2L   70000 perm   15 sec   (4722 perm/sec)   p_kst 1.857143e-04   p_cons 6.659143e-01   p_joint 2.028571e-03

Joint ci ratio: 3.409085e-01	ci left: 1.369286e-03	ci right 1.942828e-03	k: 131	n:80000
Cons ci ratio: 9.803032e-03	ci left: 6.632458e-01	ci right 6.697921e-01	k: 53322	n:80000
KS ci ratio: 9.798959e-01	ci left: 1.049460e-04	ci right 3.092339e-04	k: 15	n:80000
UBAP2L   80000 perm   17 sec   (4639 perm/sec)   p_kst 1.875000e-04   p_cons 6.665250e-01   p_joint 1.637500e-03

Joint ci ratio: 3.823275e-01	ci left: 9.442672e-04	ci right 1.399978e-03	k: 104	n:90000
Cons ci ratio: 9.229983e-03	ci left: 6.640326e-01	ci right 6.702011e-01	k: 60041	n:90000
KS ci ratio: 9.238553e-01	ci left: 1.100385e-04	ci right 3.024122e-04	k: 17	n:90000
UBAP2L   90000 perm   20 sec   (4563 perm/sec)   p_kst 1.888889e-04   p_cons 6.671222e-01   p_joint 1.155556e-03

Joint ci ratio: 4.107386e-01	ci left: 7.237665e-04	ci right 1.106139e-03	k: 90	n:100000
Cons ci ratio: 8.763283e-03	ci left: 6.638387e-01	ci right 6.696916e-01	k: 66677	n:100000
KS ci ratio: 8.172784e-01	ci left: 1.378778e-04	ci right 3.330638e-04	k: 22	n:100000
UBAP2L   100000 perm   22 sec   (4482 perm/sec)   p_kst 2.200000e-04   p_cons 6.667700e-01   p_joint 9.000000e-04

Joint ci ratio: 3.937957e-01	ci left: 7.233404e-04	ci right 1.085627e-03	k: 98	n:110000
Cons ci ratio: 8.358323e-03	ci left: 6.638234e-01	ci right 6.694042e-01	k: 73328	n:110000
KS ci ratio: 7.278265e-01	ci left: 1.691501e-04	ci right 3.678682e-04	k: 28	n:110000
UBAP2L   110000 perm   25 sec   (4413 perm/sec)   p_kst 2.545455e-04   p_cons 6.666182e-01   p_joint 8.909091e-04

Joint ci ratio: 3.823838e-01	ci left: 7.081827e-04	ci right 1.050015e-03	k: 104	n:120000
Cons ci ratio: 8.005968e-03	ci left: 6.637492e-01	ci right 6.690928e-01	k: 79971	n:120000
KS ci ratio: 7.155984e-01	ci left: 1.618537e-04	ci right 3.470554e-04	k: 29	n:120000
UBAP2L   120000 perm   28 sec   (4348 perm/sec)   p_kst 2.416667e-04   p_cons 6.664250e-01   p_joint 8.666667e-04

Joint ci ratio: 3.879840e-01	ci left: 6.328598e-04	ci right 9.439531e-04	k: 101	n:130000
Cons ci ratio: 7.681145e-03	ci left: 6.644768e-01	ci right 6.696081e-01	k: 86716	n:130000
KS ci ratio: 6.928767e-01	ci left: 1.620286e-04	ci right 3.384602e-04	k: 31	n:130000
UBAP2L   130000 perm   30 sec   (4275 perm/sec)   p_kst 2.384615e-04   p_cons 6.670462e-01   p_joint 7.769231e-04

Joint ci ratio: 3.753204e-01	ci left: 6.328594e-04	ci right 9.313020e-04	k: 108	n:140000
Cons ci ratio: 7.400366e-03	ci left: 6.646531e-01	ci right 6.695971e-01	k: 93398	n:140000
KS ci ratio: 6.823015e-01	ci left: 1.563478e-04	ci right 3.226595e-04	k: 32	n:140000
UBAP2L   140000 perm   33 sec   (4211 perm/sec)   p_kst 2.285714e-04   p_cons 6.671286e-01   p_joint 7.714286e-04

Joint ci ratio: 3.958491e-01	ci left: 5.244334e-04	ci right 7.888224e-04	k: 97	n:150000
Cons ci ratio: 7.143779e-03	ci left: 6.650893e-01	ci right 6.698642e-01	k: 100122	n:150000
KS ci ratio: 6.625214e-01	ci left: 1.569782e-04	ci right 3.167297e-04	k: 34	n:150000
UBAP2L   150000 perm   36 sec   (4151 perm/sec)   p_kst 2.266667e-04   p_cons 6.674800e-01   p_joint 6.466667e-04

Joint ci ratio: 3.842615e-01	ci left: 5.254791e-04	ci right 7.806806e-04	k: 103	n:160000
Cons ci ratio: 6.917307e-03	ci left: 6.651416e-01	ci right 6.697648e-01	k: 106793	n:160000
KS ci ratio: 6.443675e-01	ci left: 1.575921e-04	ci right 3.114814e-04	k: 36	n:160000
UBAP2L   160000 perm   39 sec   (4095 perm/sec)   p_kst 2.250000e-04   p_cons 6.674562e-01   p_joint 6.437500e-04

Joint ci ratio: 4.042041e-01	ci left: 4.415691e-04	ci right 6.701428e-04	k: 93	n:170000
Cons ci ratio: 6.715450e-03	ci left: 6.649012e-01	ci right 6.693872e-01	k: 113415	n:170000
KS ci ratio: 6.276285e-01	ci left: 1.581874e-04	ci right 3.067988e-04	k: 38	n:170000
UBAP2L   170000 perm   42 sec   (4031 perm/sec)   p_kst 2.235294e-04   p_cons 6.671471e-01   p_joint 5.470588e-04

Joint ci ratio: 4.085827e-01	ci left: 4.070607e-04	ci right 6.206745e-04	k: 91	n:180000
Cons ci ratio: 6.526611e-03	ci left: 6.649398e-01	ci right 6.692993e-01	k: 120082	n:180000
KS ci ratio: 6.047969e-01	ci left: 1.634621e-04	ci right 3.089937e-04	k: 41	n:180000
UBAP2L   180000 perm   45 sec   (3958 perm/sec)   p_kst 2.277778e-04   p_cons 6.671222e-01   p_joint 5.055556e-04

Joint ci ratio: 3.999812e-01	ci left: 4.045481e-04	ci right 6.111901e-04	k: 95	n:190000
Cons ci ratio: 6.349845e-03	ci left: 6.651867e-01	ci right 6.694292e-01	k: 126789	n:190000
KS ci ratio: 6.048007e-01	ci left: 1.548586e-04	ci right 2.927315e-04	k: 41	n:190000
UBAP2L   190000 perm   49 sec   (3907 perm/sec)   p_kst 2.157895e-04   p_cons 6.673105e-01   p_joint 5.000000e-04

Joint ci ratio: 3.880379e-01	ci left: 4.113490e-04	ci right 6.135874e-04	k: 101	n:200000
Cons ci ratio: 6.196809e-03	ci left: 6.646842e-01	ci right 6.688209e-01	k: 133351	n:200000
KS ci ratio: 5.908957e-01	ci left: 1.556008e-04	ci right 2.895928e-04	k: 43	n:200000
UBAP2L   200000 perm   52 sec   (3855 perm/sec)   p_kst 2.150000e-04   p_cons 6.667550e-01   p_joint 5.050000e-04

Joint ci ratio: 3.861534e-01	ci left: 3.960588e-04	ci right 5.895934e-04	k: 102	n:210000
Cons ci ratio: 6.042125e-03	ci left: 6.651275e-01	ci right 6.691631e-01	k: 140101	n:210000
KS ci ratio: 5.657373e-01	ci left: 1.644513e-04	ci right 2.976082e-04	k: 47	n:210000
UBAP2L   210000 perm   55 sec   (3808 perm/sec)   p_kst 2.238095e-04   p_cons 6.671476e-01   p_joint 4.857143e-04

Joint ci ratio: 3.938853e-01	ci left: 3.616559e-04	ci right 5.428400e-04	k: 98	n:220000
Cons ci ratio: 5.905110e-03	ci left: 6.650307e-01	ci right 6.689739e-01	k: 146741	n:220000
KS ci ratio: 5.543075e-01	ci left: 1.647793e-04	ci right 2.944467e-04	k: 49	n:220000
UBAP2L   220000 perm   59 sec   (3760 perm/sec)   p_kst 2.227273e-04   p_cons 6.670045e-01   p_joint 4.454545e-04

Joint ci ratio: 4.201877e-01	ci left: 2.990927e-04	ci right 4.617593e-04	k: 86	n:230000
Cons ci ratio: 5.776672e-03	ci left: 6.649695e-01	ci right 6.688263e-01	k: 153387	n:230000
KS ci ratio: 5.543103e-01	ci left: 1.576148e-04	ci right 2.816451e-04	k: 49	n:230000
UBAP2L   230000 perm   62 sec   (3712 perm/sec)   p_kst 2.130435e-04   p_cons 6.669000e-01   p_joint 3.739130e-04

Joint ci ratio: 4.131259e-01	ci left: 2.978199e-04	ci right 4.563228e-04	k: 89	n:240000
Cons ci ratio: 5.655575e-03	ci left: 6.649685e-01	ci right 6.687441e-01	k: 160046	n:240000
KS ci ratio: 5.543128e-01	ci left: 1.510473e-04	ci right 2.699103e-04	k: 49	n:240000
UBAP2L   240000 perm   66 sec   (3662 perm/sec)   p_kst 2.041667e-04   p_cons 6.668583e-01   p_joint 3.708333e-04

Joint ci ratio: 4.064086e-01	ci left: 2.966699e-04	ci right 4.513005e-04	k: 92	n:250000
Cons ci ratio: 5.541888e-03	ci left: 6.649604e-01	ci right 6.686597e-01	k: 166703	n:250000
KS ci ratio: 5.383953e-01	ci left: 1.553481e-04	ci right 2.727555e-04	k: 52	n:250000
UBAP2L   250000 perm   69 sec   (3615 perm/sec)   p_kst 2.080000e-04   p_cons 6.668120e-01   p_joint 3.680000e-04

Joint ci ratio: 4.154472e-01	ci left: 2.714646e-04	ci right 4.169777e-04	k: 88	n:260000
Cons ci ratio: 5.432299e-03	ci left: 6.651577e-01	ci right 6.687847e-01	k: 173413	n:260000
KS ci ratio: 5.237746e-01	ci left: 1.593636e-04	ci right 2.753376e-04	k: 55	n:260000
UBAP2L   260000 perm   73 sec   (3572 perm/sec)   p_kst 2.115385e-04   p_cons 6.669731e-01   p_joint 3.384615e-04

Joint ci ratio: 4.108576e-01	ci left: 2.680476e-04	ci right 4.097076e-04	k: 90	n:270000
Cons ci ratio: 5.329229e-03	ci left: 6.653188e-01	ci right 6.688776e-01	k: 180117	n:270000
KS ci ratio: 5.060127e-01	ci left: 1.663505e-04	ci right 2.818640e-04	k: 59	n:270000
UBAP2L   270000 perm   76 sec   (3530 perm/sec)   p_kst 2.185185e-04   p_cons 6.671000e-01   p_joint 3.333333e-04

Joint ci ratio: 4.000140e-01	ci left: 2.745108e-04	ci right 4.147435e-04	k: 95	n:280000
Cons ci ratio: 5.232569e-03	ci left: 6.654046e-01	ci right 6.688991e-01	k: 186803	n:280000
KS ci ratio: 4.861589e-01	ci left: 1.760322e-04	ci right 2.918714e-04	k: 64	n:280000
UBAP2L   280000 perm   80 sec   (3485 perm/sec)   p_kst 2.285714e-04   p_cons 6.671536e-01   p_joint 3.392857e-04

Joint ci ratio: 3.959122e-01	ci left: 2.712511e-04	ci right 4.080256e-04	k: 97	n:290000
Cons ci ratio: 5.143219e-03	ci left: 6.652917e-01	ci right 6.687257e-01	k: 193433	n:290000
KS ci ratio: 4.788481e-01	ci left: 1.760194e-04	ci right 2.895365e-04	k: 66	n:290000
UBAP2L   290000 perm   84 sec   (3444 perm/sec)   p_kst 2.275862e-04   p_cons 6.670103e-01   p_joint 3.344828e-04

Joint ci ratio: 3.899883e-01	ci left: 2.712213e-04	ci right 4.054080e-04	k: 100	n:300000
Cons ci ratio: 5.054766e-03	ci left: 6.654972e-01	ci right 6.688729e-01	k: 200156	n:300000
KS ci ratio: 4.718575e-01	ci left: 1.760197e-04	ci right 2.873453e-04	k: 68	n:300000
UBAP2L   300000 perm   88 sec   (3405 perm/sec)   p_kst 2.266667e-04   p_cons 6.671867e-01   p_joint 3.333333e-04

Joint ci ratio: 3.771359e-01	ci left: 2.828764e-04	ci right 4.170771e-04	k: 107	n:310000
Cons ci ratio: 4.972709e-03	ci left: 6.655122e-01	ci right 6.688330e-01	k: 206824	n:310000
KS ci ratio: 4.619220e-01	ci left: 1.788803e-04	ci right 2.888844e-04	k: 71	n:310000
UBAP2L   310000 perm   92 sec   (3365 perm/sec)   p_kst 2.290323e-04   p_cons 6.671742e-01   p_joint 3.451613e-04

Joint ci ratio: 3.654756e-01	ci left: 2.938710e-04	ci right 4.279497e-04	k: 114	n:320000
Cons ci ratio: 4.895487e-03	ci left: 6.654391e-01	ci right 6.687078e-01	k: 213464	n:320000
KS ci ratio: 4.466710e-01	ci left: 1.871274e-04	ci right 2.972578e-04	k: 76	n:320000
UBAP2L   320000 perm   96 sec   (3328 perm/sec)   p_kst 2.375000e-04   p_cons 6.670750e-01   p_joint 3.562500e-04

Joint ci ratio: 3.608002e-01	ci left: 2.932273e-04	ci right 4.248985e-04	k: 117	n:330000
Cons ci ratio: 4.820209e-03	ci left: 6.655135e-01	ci right 6.687321e-01	k: 220151	n:330000
KS ci ratio: 4.409810e-01	ci left: 1.868400e-04	ci right 2.949839e-04	k: 78	n:330000
UBAP2L   330000 perm   100 sec   (3290 perm/sec)   p_kst 2.363636e-04   p_cons 6.671242e-01   p_joint 3.545455e-04

Joint ci ratio: 3.577817e-01	ci left: 2.899543e-04	ci right 4.188128e-04	k: 119	n:340000
Cons ci ratio: 4.749305e-03	ci left: 6.654895e-01	ci right 6.686606e-01	k: 226806	n:340000
KS ci ratio: 4.382171e-01	ci left: 1.839602e-04	ci right 2.895728e-04	k: 79	n:340000
UBAP2L   340000 perm   104 sec   (3254 perm/sec)   p_kst 2.323529e-04   p_cons 6.670765e-01   p_joint 3.500000e-04

Joint ci ratio: 2.583918e-01	ci left: 5.723043e-04	ci right 7.447087e-04	k: 229	n:350000
Cons ci ratio: 4.680267e-03	ci left: 6.655789e-01	ci right 6.687041e-01	k: 233500	n:350000
KS ci ratio: 4.328403e-01	ci left: 1.837918e-04	ci right 2.876365e-04	k: 81	n:350000
UBAP2L   350000 perm   109 sec   (3220 perm/sec)   p_kst 2.314286e-04   p_cons 6.671429e-01   p_joint 6.542857e-04

Joint ci ratio: 2.545472e-01	ci left: 5.746017e-04	ci right 7.447139e-04	k: 236	n:360000
Cons ci ratio: 4.617763e-03	ci left: 6.653159e-01	ci right 6.683980e-01	k: 240069	n:360000
KS ci ratio: 4.276566e-01	ci left: 1.836403e-04	ci right 2.858004e-04	k: 83	n:360000
UBAP2L   360000 perm   113 sec   (3186 perm/sec)   p_kst 2.305556e-04   p_cons 6.668583e-01   p_joint 6.555556e-04

Joint ci ratio: 2.503563e-01	ci left: 5.793258e-04	ci right 7.475730e-04	k: 244	n:370000
Cons ci ratio: 4.554174e-03	ci left: 6.654111e-01	ci right 6.684511e-01	k: 246765	n:370000
KS ci ratio: 4.251343e-01	ci left: 1.810896e-04	ci right 2.810673e-04	k: 84	n:370000
UBAP2L   370000 perm   117 sec   (3151 perm/sec)   p_kst 2.270270e-04   p_cons 6.669324e-01   p_joint 6.594595e-04

Joint ci ratio: 2.463659e-01	ci left: 5.838230e-04	ci right 7.502600e-04	k: 252	n:380000
Cons ci ratio: 4.492422e-03	ci left: 6.655727e-01	ci right 6.685721e-01	k: 253488	n:380000
KS ci ratio: 4.226561e-01	ci left: 1.786748e-04	ci right 2.765817e-04	k: 85	n:380000
UBAP2L   380000 perm   122 sec   (3118 perm/sec)   p_kst 2.236842e-04   p_cons 6.670737e-01   p_joint 6.631579e-04

Joint ci ratio: 2.449193e-01	ci left: 5.760718e-04	ci right 7.391879e-04	k: 255	n:390000
Cons ci ratio: 4.433423e-03	ci left: 6.656955e-01	ci right 6.686559e-01	k: 260199	n:390000
KS ci ratio: 4.226573e-01	ci left: 1.740933e-04	ci right 2.694900e-04	k: 85	n:390000
UBAP2L   390000 perm   126 sec   (3083 perm/sec)   p_kst 2.179487e-04   p_cons 6.671769e-01   p_joint 6.538462e-04

Joint ci ratio: 2.430288e-01	ci left: 5.710585e-04	ci right 7.313186e-04	k: 259	n:400000
Cons ci ratio: 4.378832e-03	ci left: 6.655946e-01	ci right 6.685180e-01	k: 266823	n:400000
KS ci ratio: 4.178269e-01	ci left: 1.742121e-04	ci right 2.682786e-04	k: 87	n:400000
UBAP2L   400000 perm   131 sec   (3049 perm/sec)   p_kst 2.175000e-04   p_cons 6.670575e-01   p_joint 6.475000e-04

Joint ci ratio: 2.672714e-01	ci left: 4.543728e-04	ci right 5.967431e-04	k: 214	n:410000
Cons ci ratio: 4.324878e-03	ci left: 6.656356e-01	ci right 6.685230e-01	k: 273503	n:410000
KS ci ratio: 4.131584e-01	ci left: 1.743311e-04	ci right 2.671205e-04	k: 89	n:410000
UBAP2L   410000 perm   136 sec   (3015 perm/sec)   p_kst 2.170732e-04   p_cons 6.670805e-01   p_joint 5.219512e-04

Joint ci ratio: 2.850735e-01	ci left: 3.859297e-04	ci right 5.163616e-04	k: 188	n:420000
Cons ci ratio: 4.274268e-03	ci left: 6.655295e-01	ci right 6.683825e-01	k: 280122	n:420000
KS ci ratio: 4.042714e-01	ci left: 1.787250e-04	ci right 2.712582e-04	k: 93	n:420000
UBAP2L   420000 perm   141 sec   (2983 perm/sec)   p_kst 2.214286e-04   p_cons 6.669571e-01   p_joint 4.476190e-04

Joint ci ratio: 2.813758e-01	ci left: 3.877567e-04	ci right 5.168048e-04	k: 193	n:430000
Cons ci ratio: 4.225791e-03	ci left: 6.653865e-01	ci right 6.682066e-01	k: 286723	n:430000
KS ci ratio: 4.042725e-01	ci left: 1.745686e-04	ci right 2.649500e-04	k: 93	n:430000
UBAP2L   430000 perm   146 sec   (2952 perm/sec)   p_kst 2.162791e-04   p_cons 6.667977e-01   p_joint 4.488372e-04

Joint ci ratio: 2.778183e-01	ci left: 3.895111e-04	ci right 5.172174e-04	k: 198	n:440000
Cons ci ratio: 4.179119e-03	ci left: 6.652298e-01	ci right 6.680180e-01	k: 293315	n:440000
KS ci ratio: 4.021396e-01	ci left: 1.726433e-04	ci right 2.614306e-04	k: 94	n:440000
UBAP2L   440000 perm   151 sec   (2921 perm/sec)   p_kst 2.136364e-04   p_cons 6.666250e-01   p_joint 4.500000e-04

Joint ci ratio: 2.743924e-01	ci left: 3.911973e-04	ci right 5.176021e-04	k: 203	n:450000
Cons ci ratio: 4.132821e-03	ci left: 6.652026e-01	ci right 6.679597e-01	k: 299962	n:450000
KS ci ratio: 3.939310e-01	ci left: 1.768060e-04	ci right 2.653950e-04	k: 98	n:450000
UBAP2L   450000 perm   156 sec   (2892 perm/sec)   p_kst 2.177778e-04   p_cons 6.665822e-01   p_joint 4.511111e-04

Joint ci ratio: 2.730579e-01	ci left: 3.867423e-04	ci right 5.109955e-04	k: 205	n:460000
Cons ci ratio: 4.088029e-03	ci left: 6.651768e-01	ci right 6.679037e-01	k: 306609	n:460000
KS ci ratio: 3.919570e-01	ci left: 1.749214e-04	ci right 2.620133e-04	k: 99	n:460000
UBAP2L   460000 perm   161 sec   (2860 perm/sec)   p_kst 2.152174e-04   p_cons 6.665413e-01   p_joint 4.456522e-04

Joint ci ratio: 2.764361e-01	ci left: 3.686077e-04	ci right 4.887547e-04	k: 200	n:470000
Cons ci ratio: 4.043829e-03	ci left: 6.652438e-01	ci right 6.679414e-01	k: 313299	n:470000
KS ci ratio: 3.900123e-01	ci left: 1.731181e-04	ci right 2.587745e-04	k: 100	n:470000
UBAP2L   470000 perm   166 sec   (2832 perm/sec)   p_kst 2.127660e-04   p_cons 6.665936e-01   p_joint 4.255319e-04

Joint ci ratio: 1.979088e-01	ci left: 7.358613e-04	ci right 8.994277e-04	k: 391	n:480000
Cons ci ratio: 4.002402e-03	ci left: 6.651559e-01	ci right 6.678255e-01	k: 319916	n:480000
KS ci ratio: 3.843456e-01	ci left: 1.751531e-04	ci right 2.602388e-04	k: 103	n:480000
UBAP2L   480000 perm   171 sec   (2804 perm/sec)   p_kst 2.145833e-04   p_cons 6.664917e-01   p_joint 8.145833e-04

Joint ci ratio: 1.959198e-01	ci left: 7.363654e-04	ci right 8.982024e-04	k: 399	n:490000
Cons ci ratio: 3.961822e-03	ci left: 6.651166e-01	ci right 6.677589e-01	k: 326555	n:490000
KS ci ratio: 3.807025e-01	ci left: 1.752677e-04	ci right 2.594001e-04	k: 105	n:490000
UBAP2L   490000 perm   176 sec   (2777 perm/sec)   p_kst 2.142857e-04   p_cons 6.664388e-01   p_joint 8.142857e-04

Joint ci ratio: 3.277597e-01	ci left: 2.392160e-04	ci right 3.347317e-04	k: 142	n:500000
Cons ci ratio: 3.922011e-03	ci left: 6.651292e-01	ci right 6.677449e-01	k: 333219	n:500000
KS ci ratio: 4.131667e-01	ci left: 1.429510e-04	ci right 2.190398e-04	k: 89	n:500000
UBAP2L   500000 perm   182 sec   (2749 perm/sec)   p_kst 1.780000e-04   p_cons 6.664380e-01   p_joint 2.840000e-04

Joint ci ratio: 3.243748e-01	ci left: 2.399264e-04	ci right 3.345304e-04	k: 145	n:510000
Cons ci ratio: 3.883616e-03	ci left: 6.651139e-01	ci right 6.677039e-01	k: 339869	n:510000
KS ci ratio: 4.108906e-01	ci left: 1.419055e-04	ci right 2.169079e-04	k: 90	n:510000
UBAP2L   510000 perm   187 sec   (2724 perm/sec)   p_kst 1.764706e-04   p_cons 6.664098e-01   p_joint 2.843137e-04

Joint ci ratio: 3.200202e-01	ci left: 2.423827e-04	ci right 3.364094e-04	k: 149	n:520000
Cons ci ratio: 3.846377e-03	ci left: 6.650935e-01	ci right 6.676585e-01	k: 346516	n:520000
KS ci ratio: 4.042802e-01	ci left: 1.443543e-04	ci right 2.190942e-04	k: 93	n:520000
UBAP2L   520000 perm   193 sec   (2699 perm/sec)   p_kst 1.788462e-04   p_cons 6.663769e-01   p_joint 2.865385e-04

Joint ci ratio: 3.148156e-01	ci left: 2.464921e-04	ci right 3.402449e-04	k: 154	n:530000
Cons ci ratio: 3.808604e-03	ci left: 6.652591e-01	ci right 6.677995e-01	k: 353261	n:530000
KS ci ratio: 3.979789e-01	ci left: 1.467199e-04	ci right 2.211888e-04	k: 96	n:530000
UBAP2L   530000 perm   198 sec   (2674 perm/sec)   p_kst 1.811321e-04   p_cons 6.665302e-01   p_joint 2.905660e-04

Joint ci ratio: 3.118125e-01	ci left: 2.470462e-04	ci right 3.399350e-04	k: 157	n:540000
Cons ci ratio: 3.773918e-03	ci left: 6.651832e-01	ci right 6.677002e-01	k: 359879	n:540000
KS ci ratio: 3.939383e-01	ci left: 1.473378e-04	ci right 2.211634e-04	k: 98	n:540000
UBAP2L   540000 perm   204 sec   (2646 perm/sec)   p_kst 1.814815e-04   p_cons 6.664426e-01   p_joint 2.907407e-04

Joint ci ratio: 3.088938e-01	ci left: 2.475842e-04	ci right 3.396324e-04	k: 160	n:550000
Cons ci ratio: 3.739627e-03	ci left: 6.651740e-01	ci right 6.676679e-01	k: 366532	n:550000
KS ci ratio: 3.881015e-01	ci left: 1.495772e-04	ci right 2.231304e-04	k: 101	n:550000
UBAP2L   550000 perm   210 sec   (2617 perm/sec)   p_kst 1.836364e-04   p_cons 6.664218e-01   p_joint 2.909091e-04

Joint ci ratio: 3.060555e-01	ci left: 2.481070e-04	ci right 3.393367e-04	k: 163	n:560000
Cons ci ratio: 3.706136e-03	ci left: 6.651794e-01	ci right 6.676510e-01	k: 373193	n:560000
KS ci ratio: 3.862132e-01	ci left: 1.485181e-04	ci right 2.211047e-04	k: 102	n:560000
UBAP2L   560000 perm   216 sec   (2594 perm/sec)   p_kst 1.821429e-04   p_cons 6.664161e-01   p_joint 2.910714e-04

Joint ci ratio: 3.032940e-01	ci left: 2.486151e-04	ci right 3.390476e-04	k: 166	n:570000
Cons ci ratio: 3.672542e-03	ci left: 6.653042e-01	ci right 6.677538e-01	k: 379922	n:570000
KS ci ratio: 3.825173e-01	ci left: 1.490822e-04	ci right 2.210719e-04	k: 104	n:570000
UBAP2L   570000 perm   222 sec   (2571 perm/sec)   p_kst 1.824561e-04   p_cons 6.665298e-01   p_joint 2.912281e-04

Joint ci ratio: 2.962792e-01	ci left: 2.570847e-04	ci right 3.480290e-04	k: 174	n:580000
Cons ci ratio: 3.640198e-03	ci left: 6.653816e-01	ci right 6.678098e-01	k: 386626	n:580000
KS ci ratio: 3.737216e-01	ci left: 1.543134e-04	ci right 2.266964e-04	k: 109	n:580000
UBAP2L   580000 perm   228 sec   (2549 perm/sec)   p_kst 1.879310e-04   p_cons 6.665966e-01   p_joint 3.000000e-04

Joint ci ratio: 2.937718e-01	ci left: 2.574359e-04	ci right 3.475902e-04	k: 177	n:590000
Cons ci ratio: 3.609437e-03	ci left: 6.653649e-01	ci right 6.677725e-01	k: 393276	n:590000
KS ci ratio: 3.703697e-01	ci left: 1.547708e-04	ci right 2.265594e-04	k: 111	n:590000
UBAP2L   590000 perm   233 sec   (2527 perm/sec)   p_kst 1.881356e-04   p_cons 6.665695e-01   p_joint 3.000000e-04

Joint ci ratio: 2.897303e-01	ci left: 2.608689e-04	ci right 3.507383e-04	k: 182	n:600000
Cons ci ratio: 3.579724e-03	ci left: 6.653138e-01	ci right 6.677013e-01	k: 399905	n:600000
KS ci ratio: 3.655065e-01	ci left: 1.567290e-04	ci right 2.282437e-04	k: 114	n:600000
UBAP2L   600000 perm   239 sec   (2506 perm/sec)   p_kst 1.900000e-04   p_cons 6.665083e-01   p_joint 3.033333e-04

Joint ci ratio: 2.971318e-01	ci left: 2.429236e-04	ci right 3.291522e-04	k: 173	n:610000
Cons ci ratio: 3.550943e-03	ci left: 6.652381e-01	ci right 6.676062e-01	k: 406518	n:610000
KS ci ratio: 3.655071e-01	ci left: 1.541597e-04	ci right 2.245020e-04	k: 114	n:610000
UBAP2L   610000 perm   245 sec   (2485 perm/sec)   p_kst 1.868852e-04   p_cons 6.664230e-01   p_joint 2.836066e-04

Joint ci ratio: 2.929520e-01	ci left: 2.464733e-04	ci right 3.325029e-04	k: 178	n:620000
Cons ci ratio: 3.521631e-03	ci left: 6.653184e-01	ci right 6.676671e-01	k: 413226	n:620000
KS ci ratio: 3.593110e-01	ci left: 1.575375e-04	ci right 2.279175e-04	k: 118	n:620000
UBAP2L   620000 perm   252 sec   (2464 perm/sec)   p_kst 1.903226e-04   p_cons 6.664935e-01   p_joint 2.870968e-04

Joint ci ratio: 2.889438e-01	ci left: 2.499185e-04	ci right 3.357390e-04	k: 183	n:630000
Cons ci ratio: 3.493207e-03	ci left: 6.653740e-01	ci right 6.677039e-01	k: 419920	n:630000
KS ci ratio: 3.548655e-01	ci left: 1.593717e-04	ci right 2.294871e-04	k: 121	n:630000
UBAP2L   630000 perm   258 sec   (2444 perm/sec)   p_kst 1.920635e-04   p_cons 6.665397e-01   p_joint 2.904762e-04

Joint ci ratio: 3.051320e-01	ci left: 2.185358e-04	ci right 2.986024e-04	k: 164	n:640000
Cons ci ratio: 3.466874e-03	ci left: 6.652464e-01	ci right 6.675583e-01	k: 426498	n:640000
KS ci ratio: 3.505809e-01	ci left: 1.611537e-04	ci right 2.310024e-04	k: 124	n:640000
UBAP2L   640000 perm   264 sec   (2424 perm/sec)   p_kst 1.937500e-04   p_cons 6.664031e-01   p_joint 2.562500e-04

Joint ci ratio: 3.032995e-01	ci left: 2.180158e-04	ci right 2.973196e-04	k: 166	n:650000
Cons ci ratio: 3.440960e-03	ci left: 6.651445e-01	ci right 6.674387e-01	k: 433090	n:650000
KS ci ratio: 3.491872e-01	ci left: 1.600777e-04	ci right 2.291217e-04	k: 125	n:650000
UBAP2L   650000 perm   270 sec   (2405 perm/sec)   p_kst 1.923077e-04   p_cons 6.662923e-01   p_joint 2.553846e-04

Joint ci ratio: 3.023958e-01	ci left: 2.161125e-04	ci right 2.944447e-04	k: 167	n:660000
Cons ci ratio: 3.414443e-03	ci left: 6.651988e-01	ci right 6.674755e-01	k: 439783	n:660000
KS ci ratio: 3.478100e-01	ci left: 1.590348e-04	ci right 2.272975e-04	k: 126	n:660000
UBAP2L   660000 perm   277 sec   (2386 perm/sec)   p_kst 1.909091e-04   p_cons 6.663379e-01   p_joint 2.530303e-04

Joint ci ratio: 2.988586e-01	ci left: 2.184069e-04	ci right 2.964690e-04	k: 171	n:670000
Cons ci ratio: 3.388722e-03	ci left: 6.652262e-01	ci right 6.674858e-01	k: 446459	n:670000
KS ci ratio: 3.424583e-01	ci left: 1.621139e-04	ci right 2.303905e-04	k: 130	n:670000
UBAP2L   670000 perm   283 sec   (2366 perm/sec)   p_kst 1.940299e-04   p_cons 6.663567e-01   p_joint 2.552239e-04

Joint ci ratio: 2.954427e-01	ci left: 2.206390e-04	ci right 2.984287e-04	k: 175	n:680000
Cons ci ratio: 3.363463e-03	ci left: 6.652676e-01	ci right 6.675104e-01	k: 453145	n:680000
KS ci ratio: 3.373461e-01	ci left: 1.651102e-04	ci right 2.333849e-04	k: 134	n:680000
UBAP2L   680000 perm   290 sec   (2347 perm/sec)   p_kst 1.970588e-04   p_cons 6.663897e-01   p_joint 2.573529e-04

Joint ci ratio: 2.913329e-01	ci left: 2.241545e-04	ci right 3.018817e-04	k: 180	n:690000
Cons ci ratio: 3.339926e-03	ci left: 6.651526e-01	ci right 6.673793e-01	k: 459724	n:690000
KS ci ratio: 3.324563e-01	ci left: 1.680271e-04	ci right 2.362852e-04	k: 138	n:690000
UBAP2L   690000 perm   296 sec   (2328 perm/sec)   p_kst 2.000000e-04   p_cons 6.662667e-01   p_joint 2.608696e-04

Joint ci ratio: 2.897367e-01	ci left: 2.236013e-04	ci right 3.006339e-04	k: 182	n:700000
Cons ci ratio: 3.315607e-03	ci left: 6.652111e-01	ci right 6.674218e-01	k: 466422	n:700000
KS ci ratio: 3.300901e-01	ci left: 1.682462e-04	ci right 2.360036e-04	k: 140	n:700000
UBAP2L   700000 perm   303 sec   (2310 perm/sec)   p_kst 2.000000e-04   p_cons 6.663171e-01   p_joint 2.600000e-04

Joint ci ratio: 2.866208e-01	ci left: 2.256786e-04	ci right 3.024394e-04	k: 186	n:710000
Cons ci ratio: 3.292093e-03	ci left: 6.652300e-01	ci right 6.674250e-01	k: 473093	n:710000
KS ci ratio: 3.266333e-01	ci left: 1.697537e-04	ci right 2.372520e-04	k: 143	n:710000
UBAP2L   710000 perm   310 sec   (2292 perm/sec)   p_kst 2.014085e-04   p_cons 6.663282e-01   p_joint 2.619718e-04

Joint ci ratio: 2.843490e-01	ci left: 2.264126e-04	ci right 3.027030e-04	k: 189	n:720000
Cons ci ratio: 3.269348e-03	ci left: 6.652109e-01	ci right 6.673906e-01	k: 479737	n:720000
KS ci ratio: 3.243884e-01	ci left: 1.699468e-04	ci right 2.369608e-04	k: 145	n:720000
UBAP2L   720000 perm   317 sec   (2275 perm/sec)   p_kst 2.013889e-04   p_cons 6.663014e-01   p_joint 2.625000e-04

Joint ci ratio: 2.843495e-01	ci left: 2.233110e-04	ci right 2.985565e-04	k: 189	n:730000
Cons ci ratio: 3.246869e-03	ci left: 6.652197e-01	ci right 6.673844e-01	k: 486401	n:730000
KS ci ratio: 3.243888e-01	ci left: 1.676187e-04	ci right 2.337148e-04	k: 145	n:730000
UBAP2L   730000 perm   323 sec   (2257 perm/sec)   p_kst 1.986301e-04   p_cons 6.663027e-01   p_joint 2.589041e-04

Joint ci ratio: 2.416744e-01	ci left: 3.124829e-04	ci right 3.996146e-04	k: 262	n:740000
Cons ci ratio: 3.224503e-03	ci left: 6.652757e-01	ci right 6.674257e-01	k: 493100	n:740000
KS ci ratio: 3.211064e-01	ci left: 1.690793e-04	ci right 2.349378e-04	k: 148	n:740000
UBAP2L   740000 perm   331 sec   (2239 perm/sec)   p_kst 2.000000e-04   p_cons 6.663514e-01   p_joint 3.540541e-04

Joint ci ratio: 2.407610e-01	ci left: 3.108220e-04	ci right 3.971140e-04	k: 264	n:750000
Cons ci ratio: 3.203564e-03	ci left: 6.651955e-01	ci right 6.673312e-01	k: 499698	n:750000
KS ci ratio: 3.200344e-01	ci left: 1.680509e-04	ci right 2.332456e-04	k: 149	n:750000
UBAP2L   750000 perm   338 sec   (2222 perm/sec)   p_kst 1.986667e-04   p_cons 6.662640e-01   p_joint 3.520000e-04

Joint ci ratio: 2.389642e-01	ci left: 3.116791e-04	ci right 3.974677e-04	k: 268	n:760000
Cons ci ratio: 3.183149e-03	ci left: 6.651003e-01	ci right 6.672221e-01	k: 506283	n:760000
KS ci ratio: 3.189732e-01	ci left: 1.670500e-04	ci right 2.315976e-04	k: 150	n:760000
UBAP2L   760000 perm   345 sec   (2205 perm/sec)   p_kst 1.973684e-04   p_cons 6.661618e-01   p_joint 3.526316e-04

Joint ci ratio: 2.376428e-01	ci left: 3.112948e-04	ci right 3.964341e-04	k: 271	n:770000
Cons ci ratio: 3.161993e-03	ci left: 6.651662e-01	ci right 6.672741e-01	k: 512990	n:770000
KS ci ratio: 3.179224e-01	ci left: 1.660754e-04	ci right 2.299920e-04	k: 151	n:770000
UBAP2L   770000 perm   352 sec   (2187 perm/sec)   p_kst 1.961039e-04   p_cons 6.662208e-01   p_joint 3.519481e-04

Joint ci ratio: 1.896500e-01	ci left: 4.955278e-04	ci right 6.005469e-04	k: 426	n:780000
Cons ci ratio: 3.141587e-03	ci left: 6.651830e-01	ci right 6.672773e-01	k: 519660	n:780000
KS ci ratio: 3.118267e-01	ci left: 1.710309e-04	ci right 2.353414e-04	k: 157	n:780000
UBAP2L   780000 perm   359 sec   (2171 perm/sec)   p_kst 2.012821e-04   p_cons 6.662308e-01   p_joint 5.461538e-04

Joint ci ratio: 1.994739e-01	ci left: 4.398816e-04	ci right 5.385247e-04	k: 385	n:790000
Cons ci ratio: 3.121324e-03	ci left: 6.652349e-01	ci right 6.673158e-01	k: 526358	n:790000
KS ci ratio: 3.098716e-01	ci left: 1.712001e-04	ci right 2.350909e-04	k: 159	n:790000
UBAP2L   790000 perm   367 sec   (2155 perm/sec)   p_kst 2.012658e-04   p_cons 6.662759e-01   p_joint 4.873418e-04

Joint ci ratio: 1.576245e-01	ci left: 7.116076e-04	ci right 8.345536e-04	k: 617	n:800000
Cons ci ratio: 3.101717e-03	ci left: 6.652467e-01	ci right 6.673146e-01	k: 533025	n:800000
KS ci ratio: 3.070066e-01	ci left: 1.725199e-04	ci right 2.361916e-04	k: 162	n:800000
UBAP2L   800000 perm   374 sec   (2139 perm/sec)   p_kst 2.025000e-04   p_cons 6.662813e-01   p_joint 7.712500e-04

Joint ci ratio: 1.564890e-01	ci left: 7.134968e-04	ci right 8.357979e-04	k: 626	n:810000
Cons ci ratio: 3.083194e-03	ci left: 6.651545e-01	ci right 6.672097e-01	k: 539608	n:810000
KS ci ratio: 3.051403e-01	ci left: 1.726696e-04	ci right 2.359338e-04	k: 164	n:810000
UBAP2L   810000 perm   381 sec   (2123 perm/sec)   p_kst 2.024691e-04   p_cons 6.661827e-01   p_joint 7.728395e-04

Joint ci ratio: 1.555001e-01	ci left: 7.141709e-04	ci right 8.357418e-04	k: 634	n:820000
Cons ci ratio: 3.064612e-03	ci left: 6.651208e-01	ci right 6.671634e-01	k: 546237	n:820000
KS ci ratio: 3.024034e-01	ci left: 1.739436e-04	ci right 2.369930e-04	k: 167	n:820000
UBAP2L   820000 perm   389 sec   (2108 perm/sec)   p_kst 2.036585e-04   p_cons 6.661427e-01   p_joint 7.731707e-04

Joint ci ratio: 1.660399e-01	ci left: 6.153647e-04	ci right 7.279265e-04	k: 556	n:830000
Cons ci ratio: 3.045876e-03	ci left: 6.651590e-01	ci right 6.671892e-01	k: 552925	n:830000
KS ci ratio: 2.997388e-01	ci left: 1.751894e-04	ci right 2.380243e-04	k: 170	n:830000
UBAP2L   830000 perm   397 sec   (2093 perm/sec)   p_kst 2.048193e-04   p_cons 6.661747e-01   p_joint 6.698795e-04

Joint ci ratio: 1.648601e-01	ci left: 6.171684e-04	ci right 7.291785e-04	k: 564	n:840000
Cons ci ratio: 3.027957e-03	ci left: 6.651261e-01	ci right 6.671442e-01	k: 559554	n:840000
KS ci ratio: 2.988664e-01	ci left: 1.742049e-04	ci right 2.364703e-04	k: 171	n:840000
UBAP2L   840000 perm   404 sec   (2077 perm/sec)   p_kst 2.035714e-04   p_cons 6.661357e-01   p_joint 6.714286e-04

Joint ci ratio: 1.639917e-01	ci left: 6.166760e-04	ci right 7.279490e-04	k: 570	n:850000
Cons ci ratio: 3.010939e-03	ci left: 6.650068e-01	ci right 6.670133e-01	k: 566109	n:850000
KS ci ratio: 2.962935e-01	ci left: 1.754214e-04	ci right 2.374804e-04	k: 174	n:850000
UBAP2L   850000 perm   412 sec   (2063 perm/sec)   p_kst 2.047059e-04   p_cons 6.660106e-01   p_joint 6.705882e-04

Joint ci ratio: 1.632785e-01	ci left: 6.150811e-04	ci right 7.255363e-04	k: 575	n:860000
Cons ci ratio: 2.993055e-03	ci left: 6.650614e-01	ci right 6.670561e-01	k: 572811	n:860000
KS ci ratio: 2.954507e-01	ci left: 1.744581e-04	ci right 2.359679e-04	k: 175	n:860000
UBAP2L   860000 perm   420 sec   (2048 perm/sec)   p_kst 2.034884e-04   p_cons 6.660593e-01   p_joint 6.686047e-04

Joint ci ratio: 1.800024e-01	ci left: 4.957915e-04	ci right 5.949394e-04	k: 473	n:870000
Cons ci ratio: 2.975770e-03	ci left: 6.650722e-01	ci right 6.670554e-01	k: 579476	n:870000
KS ci ratio: 2.929642e-01	ci left: 1.756467e-04	ci right 2.369576e-04	k: 178	n:870000
UBAP2L   870000 perm   427 sec   (2035 perm/sec)   p_kst 2.045977e-04   p_cons 6.660644e-01   p_joint 5.436782e-04

Joint ci ratio: 1.819333e-01	ci left: 4.793082e-04	ci right 5.763014e-04	k: 463	n:880000
Cons ci ratio: 2.958630e-03	ci left: 6.651056e-01	ci right 6.670774e-01	k: 586161	n:880000
KS ci ratio: 2.929646e-01	ci left: 1.736506e-04	ci right 2.342650e-04	k: 178	n:880000
UBAP2L   880000 perm   435 sec   (2022 perm/sec)   p_kst 2.022727e-04   p_cons 6.660920e-01   p_joint 5.261364e-04

Joint ci ratio: 2.007846e-01	ci left: 3.851191e-04	ci right 4.721187e-04	k: 380	n:890000
Cons ci ratio: 2.941455e-03	ci left: 6.651877e-01	ci right 6.671483e-01	k: 592890	n:890000
KS ci ratio: 2.913415e-01	ci left: 1.737820e-04	ci right 2.340442e-04	k: 180	n:890000
UBAP2L   890000 perm   443 sec   (2010 perm/sec)   p_kst 2.022472e-04   p_cons 6.661685e-01   p_joint 4.269663e-04

Joint ci ratio: 1.987088e-01	ci left: 3.892845e-04	ci right 4.762057e-04	k: 388	n:900000
Cons ci ratio: 2.925483e-03	ci left: 6.651301e-01	ci right 6.670799e-01	k: 599495	n:900000
KS ci ratio: 2.873985e-01	ci left: 1.770036e-04	ci right 2.374013e-04	k: 185	n:900000
UBAP2L   900000 perm   451 sec   (1996 perm/sec)   p_kst 2.055556e-04   p_cons 6.661056e-01   p_joint 4.311111e-04

Joint ci ratio: 1.966961e-01	ci left: 3.933628e-04	ci right 4.801984e-04	k: 396	n:910000
Cons ci ratio: 2.909336e-03	ci left: 6.651399e-01	ci right 6.670789e-01	k: 606160	n:910000
KS ci ratio: 2.843568e-01	ci left: 1.791390e-04	ci right 2.395023e-04	k: 189	n:910000
UBAP2L   910000 perm   459 sec   (1984 perm/sec)   p_kst 2.076923e-04   p_cons 6.661099e-01   p_joint 4.351648e-04

Joint ci ratio: 1.947434e-01	ci left: 3.973567e-04	ci right 4.840999e-04	k: 404	n:920000
Cons ci ratio: 2.893588e-03	ci left: 6.651287e-01	ci right 6.670572e-01	k: 612806	n:920000
KS ci ratio: 2.806871e-01	ci left: 1.822416e-04	ci right 2.427178e-04	k: 194	n:920000
UBAP2L   920000 perm   467 sec   (1972 perm/sec)   p_kst 2.108696e-04   p_cons 6.660935e-01   p_joint 4.391304e-04

Joint ci ratio: 1.937888e-01	ci left: 3.971760e-04	ci right 4.834046e-04	k: 408	n:930000
Cons ci ratio: 2.877821e-03	ci left: 6.651598e-01	ci right 6.670778e-01	k: 619491	n:930000
KS ci ratio: 2.792587e-01	ci left: 1.822816e-04	ci right 2.424090e-04	k: 196	n:930000
UBAP2L   930000 perm   475 sec   (1959 perm/sec)   p_kst 2.107527e-04   p_cons 6.661194e-01   p_joint 4.387097e-04

Joint ci ratio: 1.923826e-01	ci left: 3.990251e-04	ci right 4.849531e-04	k: 414	n:940000
Cons ci ratio: 2.862310e-03	ci left: 6.651903e-01	ci right 6.670980e-01	k: 626176	n:940000
KS ci ratio: 2.778519e-01	ci left: 1.823215e-04	ci right 2.421061e-04	k: 198	n:940000
UBAP2L   940000 perm   483 sec   (1947 perm/sec)   p_kst 2.106383e-04   p_cons 6.661447e-01   p_joint 4.404255e-04

Joint ci ratio: 1.910067e-01	ci left: 4.008376e-04	ci right 4.864668e-04	k: 420	n:950000
Cons ci ratio: 2.847202e-03	ci left: 6.651959e-01	ci right 6.670936e-01	k: 632838	n:950000
KS ci ratio: 2.757808e-01	ci left: 1.833411e-04	ci right 2.429341e-04	k: 201	n:950000
UBAP2L   950000 perm   491 sec   (1934 perm/sec)   p_kst 2.115789e-04   p_cons 6.661453e-01   p_joint 4.421053e-04

Joint ci ratio: 1.907806e-01	ci left: 3.976540e-04	ci right 4.824909e-04	k: 421	n:960000
Cons ci ratio: 2.832244e-03	ci left: 6.652150e-01	ci right 6.671027e-01	k: 639513	n:960000
KS ci ratio: 2.757811e-01	ci left: 1.814312e-04	ci right 2.404036e-04	k: 201	n:960000
UBAP2L   960000 perm   500 sec   (1921 perm/sec)   p_kst 2.093750e-04   p_cons 6.661594e-01   p_joint 4.385417e-04

Joint ci ratio: 1.903303e-01	ci left: 3.955180e-04	ci right 4.796769e-04	k: 423	n:970000
Cons ci ratio: 2.817924e-03	ci left: 6.651698e-01	ci right 6.670478e-01	k: 646126	n:970000
KS ci ratio: 2.744259e-01	ci left: 1.814805e-04	ci right 2.401290e-04	k: 203	n:970000
UBAP2L   970000 perm   508 sec   (1909 perm/sec)   p_kst 2.092784e-04   p_cons 6.661093e-01   p_joint 4.360825e-04

Joint ci ratio: 1.896607e-01	ci left: 3.943977e-04	ci right 4.779890e-04	k: 426	n:980000
Cons ci ratio: 2.803112e-03	ci left: 6.652378e-01	ci right 6.671061e-01	k: 652849	n:980000
KS ci ratio: 2.724299e-01	ci left: 1.824800e-04	ci right 2.409492e-04	k: 206	n:980000
UBAP2L   980000 perm   517 sec   (1897 perm/sec)   p_kst 2.102041e-04   p_cons 6.661724e-01   p_joint 4.346939e-04

Joint ci ratio: 1.892183e-01	ci left: 3.923382e-04	ci right 4.752767e-04	k: 428	n:990000
Cons ci ratio: 2.788284e-03	ci left: 6.653439e-01	ci right 6.672026e-01	k: 659611	n:990000
KS ci ratio: 2.717744e-01	ci left: 1.815780e-04	ci right 2.395942e-04	k: 207	n:990000
UBAP2L   990000 perm   525 sec   (1885 perm/sec)   p_kst 2.090909e-04   p_cons 6.662737e-01   p_joint 4.323232e-04

Joint ci ratio: 1.881251e-01	ci left: 3.931787e-04	ci right 4.757598e-04	k: 433	n:1000000
Cons ci ratio: 2.774412e-03	ci left: 6.653318e-01	ci right 6.671812e-01	k: 666257	n:1000000
KS ci ratio: 2.698353e-01	ci left: 1.825585e-04	ci right 2.404015e-04	k: 210	n:1000000
UBAP2L   1000000 perm   534 sec   (1873 perm/sec)   p_kst 2.100000e-04   p_cons 6.662570e-01   p_joint 4.330000e-04

Joint ci ratio: 1.894401e-01	ci left: 3.836258e-04	ci right 4.648286e-04	k: 427	n:1010000
Cons ci ratio: 2.760376e-03	ci left: 6.653794e-01	ci right 6.672196e-01	k: 672963	n:1010000
KS ci ratio: 2.685655e-01	ci left: 1.825976e-04	ci right 2.401348e-04	k: 212	n:1010000
UBAP2L   1010000 perm   543 sec   (1862 perm/sec)   p_kst 2.099010e-04   p_cons 6.663000e-01   p_joint 4.227723e-04

Joint ci ratio: 1.887798e-01	ci left: 3.826667e-04	ci right 4.633517e-04	k: 430	n:1020000
Cons ci ratio: 2.746805e-03	ci left: 6.653849e-01	ci right 6.672161e-01	k: 679627	n:1020000
KS ci ratio: 2.673135e-01	ci left: 1.826365e-04	ci right 2.398727e-04	k: 214	n:1020000
UBAP2L   1020000 perm   551 sec   (1850 perm/sec)   p_kst 2.098039e-04   p_cons 6.663010e-01   p_joint 4.215686e-04

Joint ci ratio: 1.964538e-01	ci left: 3.484564e-04	ci right 4.252726e-04	k: 397	n:1030000
Cons ci ratio: 2.733427e-03	ci left: 6.653913e-01	ci right 6.672136e-01	k: 686292	n:1030000
KS ci ratio: 2.673137e-01	ci left: 1.808633e-04	ci right 2.375439e-04	k: 214	n:1030000
UBAP2L   1030000 perm   560 sec   (1839 perm/sec)   p_kst 2.077670e-04   p_cons 6.663029e-01   p_joint 3.854369e-04

Joint ci ratio: 1.945083e-01	ci left: 3.524217e-04	ci right 4.292517e-04	k: 405	n:1040000
Cons ci ratio: 2.720454e-03	ci left: 6.653630e-01	ci right 6.671765e-01	k: 692921	n:1040000
KS ci ratio: 2.648610e-01	ci left: 1.827139e-04	ci right 2.393619e-04	k: 218	n:1040000
UBAP2L   1040000 perm   569 sec   (1828 perm/sec)   p_kst 2.096154e-04   p_cons 6.662702e-01   p_joint 3.894231e-04

Joint ci ratio: 1.935571e-01	ci left: 3.526898e-04	ci right 4.291579e-04	k: 409	n:1050000
Cons ci ratio: 2.707734e-03	ci left: 6.653238e-01	ci right 6.671286e-01	k: 699538	n:1050000
KS ci ratio: 2.624746e-01	ci left: 1.845315e-04	ci right 2.411429e-04	k: 222	n:1050000
UBAP2L   1050000 perm   578 sec   (1818 perm/sec)   p_kst 2.114286e-04   p_cons 6.662267e-01   p_joint 3.895238e-04

Joint ci ratio: 1.930869e-01	ci left: 3.511580e-04	ci right 4.270873e-04	k: 411	n:1060000
Cons ci ratio: 2.694835e-03	ci left: 6.653438e-01	ci right 6.671402e-01	k: 706217	n:1060000
KS ci ratio: 2.624749e-01	ci left: 1.827906e-04	ci right 2.388680e-04	k: 222	n:1060000
UBAP2L   1060000 perm   587 sec   (1807 perm/sec)   p_kst 2.094340e-04   p_cons 6.662425e-01   p_joint 3.877358e-04

Joint ci ratio: 1.921564e-01	ci left: 3.514342e-04	ci right 4.270142e-04	k: 415	n:1070000
Cons ci ratio: 2.681922e-03	ci left: 6.653963e-01	ci right 6.671841e-01	k: 712931	n:1070000
KS ci ratio: 2.607269e-01	ci left: 1.837022e-04	ci right 2.396228e-04	k: 225	n:1070000
UBAP2L   1070000 perm   596 sec   (1796 perm/sec)   p_kst 2.102804e-04   p_cons 6.662907e-01   p_joint 3.878505e-04

Joint ci ratio: 1.914673e-01	ci left: 3.508246e-04	ci right 4.259714e-04	k: 418	n:1080000
Cons ci ratio: 2.669416e-03	ci left: 6.654107e-01	ci right 6.671902e-01	k: 719605	n:1080000
KS ci ratio: 2.595808e-01	ci left: 1.837324e-04	ci right 2.393764e-04	k: 227	n:1080000
UBAP2L   1080000 perm   605 sec   (1786 perm/sec)   p_kst 2.101852e-04   p_cons 6.663009e-01   p_joint 3.870370e-04

Joint ci ratio: 1.905598e-01	ci left: 3.511002e-04	ci right 4.259084e-04	k: 422	n:1090000
Cons ci ratio: 2.656841e-03	ci left: 6.654653e-01	ci right 6.672366e-01	k: 726323	n:1090000
KS ci ratio: 2.595811e-01	ci left: 1.820467e-04	ci right 2.371803e-04	k: 227	n:1090000
UBAP2L   1090000 perm   614 sec   (1776 perm/sec)   p_kst 2.082569e-04   p_cons 6.663514e-01   p_joint 3.871560e-04

Joint ci ratio: 1.898878e-01	ci left: 3.505058e-04	ci right 4.248935e-04	k: 425	n:1100000
Cons ci ratio: 2.644512e-03	ci left: 6.655071e-01	ci right 6.672702e-01	k: 733028	n:1100000
KS ci ratio: 2.590138e-01	ci left: 1.812418e-04	ci right 2.359922e-04	k: 228	n:1100000
UBAP2L   1100000 perm   623 sec   (1765 perm/sec)   p_kst 2.072727e-04   p_cons 6.663891e-01   p_joint 3.863636e-04

Joint ci ratio: 1.894437e-01	ci left: 3.490643e-04	ci right 4.229529e-04	k: 427	n:1110000
Cons ci ratio: 2.632482e-03	ci left: 6.655265e-01	ci right 6.672817e-01	k: 739709	n:1110000
KS ci ratio: 2.590141e-01	ci left: 1.796089e-04	ci right 2.338662e-04	k: 228	n:1110000
UBAP2L   1110000 perm   632 sec   (1755 perm/sec)   p_kst 2.054054e-04   p_cons 6.664045e-01   p_joint 3.846847e-04

Joint ci ratio: 1.881295e-01	ci left: 3.510517e-04	ci right 4.247866e-04	k: 433	n:1120000
Cons ci ratio: 2.620514e-03	ci left: 6.655625e-01	ci right 6.673098e-01	k: 746409	n:1120000
KS ci ratio: 2.567809e-01	ci left: 1.813459e-04	ci right 2.355798e-04	k: 232	n:1120000
UBAP2L   1120000 perm   642 sec   (1745 perm/sec)   p_kst 2.071429e-04   p_cons 6.664366e-01   p_joint 3.866071e-04

Joint ci ratio: 1.876976e-01	ci left: 3.496316e-04	ci right 4.228805e-04	k: 435	n:1130000
Cons ci ratio: 2.608854e-03	ci left: 6.655732e-01	ci right 6.673127e-01	k: 753081	n:1130000
KS ci ratio: 2.567811e-01	ci left: 1.797410e-04	ci right 2.334951e-04	k: 232	n:1130000
UBAP2L   1130000 perm   651 sec   (1735 perm/sec)   p_kst 2.053097e-04   p_cons 6.664434e-01   p_joint 3.849558e-04

Joint ci ratio: 1.857895e-01	ci left: 3.540905e-04	ci right 4.274343e-04	k: 444	n:1140000
Cons ci ratio: 2.597634e-03	ci left: 6.655345e-01	ci right 6.672664e-01	k: 759697	n:1140000
KS ci ratio: 2.540692e-01	ci left: 1.822696e-04	ci right 2.361130e-04	k: 237	n:1140000
UBAP2L   1140000 perm   661 sec   (1725 perm/sec)   p_kst 2.078947e-04   p_cons 6.664009e-01   p_joint 3.894737e-04

Joint ci ratio: 1.849600e-01	ci left: 3.543283e-04	ci right 4.273569e-04	k: 448	n:1150000
Cons ci ratio: 2.586402e-03	ci left: 6.655235e-01	ci right 6.672479e-01	k: 766344	n:1150000
KS ci ratio: 2.535373e-01	ci left: 1.814989e-04	ci right 2.349846e-04	k: 238	n:1150000
UBAP2L   1150000 perm   670 sec   (1715 perm/sec)   p_kst 2.069565e-04   p_cons 6.663861e-01   p_joint 3.895652e-04

Joint ci ratio: 1.843453e-01	ci left: 3.537404e-04	ci right 4.263785e-04	k: 451	n:1160000
Cons ci ratio: 2.575328e-03	ci left: 6.655101e-01	ci right 6.672270e-01	k: 772988	n:1160000
KS ci ratio: 2.524831e-01	ci left: 1.815491e-04	ci right 2.347921e-04	k: 240	n:1160000
UBAP2L   1160000 perm   680 sec   (1706 perm/sec)   p_kst 2.068966e-04   p_cons 6.663690e-01   p_joint 3.887931e-04

Joint ci ratio: 1.833340e-01	ci left: 3.547938e-04	ci right 4.272041e-04	k: 456	n:1170000
Cons ci ratio: 2.564391e-03	ci left: 6.654978e-01	ci right 6.672074e-01	k: 779633	n:1170000
KS ci ratio: 2.509260e-01	ci left: 1.823997e-04	ci right 2.355108e-04	k: 243	n:1170000
UBAP2L   1170000 perm   690 sec   (1696 perm/sec)   p_kst 2.076923e-04   p_cons 6.663530e-01   p_joint 3.897436e-04

Joint ci ratio: 1.829343e-01	ci left: 3.534043e-04	ci right 4.253563e-04	k: 458	n:1180000
Cons ci ratio: 2.553524e-03	ci left: 6.654976e-01	ci right 6.671999e-01	k: 786292	n:1180000
KS ci ratio: 2.509262e-01	ci left: 1.808540e-04	ci right 2.335150e-04	k: 243	n:1180000
UBAP2L   1180000 perm   699 sec   (1687 perm/sec)   p_kst 2.059322e-04   p_cons 6.663492e-01   p_joint 3.881356e-04

Joint ci ratio: 1.821423e-01	ci left: 3.536422e-04	ci right 4.252967e-04	k: 462	n:1190000
Cons ci ratio: 2.542520e-03	ci left: 6.655453e-01	ci right 6.672404e-01	k: 793008	n:1190000
KS ci ratio: 2.499041e-01	ci left: 1.809094e-04	ci right 2.333386e-04	k: 245	n:1190000
UBAP2L   1190000 perm   709 sec   (1678 perm/sec)   p_kst 2.058824e-04   p_cons 6.663933e-01   p_joint 3.882353e-04

Joint ci ratio: 1.815552e-01	ci left: 3.530814e-04	ci right 4.243662e-04	k: 465	n:1200000
Cons ci ratio: 2.531956e-03	ci left: 6.655397e-01	ci right 6.672278e-01	k: 799661	n:1200000
KS ci ratio: 2.488944e-01	ci left: 1.809643e-04	ci right 2.331647e-04	k: 247	n:1200000
UBAP2L   1200000 perm   719 sec   (1668 perm/sec)   p_kst 2.058333e-04   p_cons 6.663842e-01   p_joint 3.875000e-04

Joint ci ratio: 1.930916e-01	ci left: 3.076253e-04	ci right 3.741435e-04	k: 411	n:1210000
Cons ci ratio: 2.521284e-03	ci left: 6.655764e-01	ci right 6.672575e-01	k: 806365	n:1210000
KS ci ratio: 2.474024e-01	ci left: 1.817939e-04	ci right 2.338709e-04	k: 250	n:1210000
UBAP2L   1210000 perm   730 sec   (1659 perm/sec)   p_kst 2.066116e-04   p_cons 6.664174e-01   p_joint 3.396694e-04

Joint ci ratio: 1.954795e-01	ci left: 2.973056e-04	ci right 3.624820e-04	k: 401	n:1220000
Cons ci ratio: 2.511212e-03	ci left: 6.655297e-01	ci right 6.672039e-01	k: 812968	n:1220000
KS ci ratio: 2.469112e-01	ci left: 1.810727e-04	ci right 2.328243e-04	k: 251	n:1220000
UBAP2L   1220000 perm   740 sec   (1649 perm/sec)   p_kst 2.057377e-04   p_cons 6.663672e-01   p_joint 3.286885e-04

Joint ci ratio: 1.952370e-01	ci left: 2.956617e-04	ci right 3.603878e-04	k: 402	n:1230000
Cons ci ratio: 2.501224e-03	ci left: 6.654903e-01	ci right 6.671577e-01	k: 819579	n:1230000
KS ci ratio: 2.469114e-01	ci left: 1.796005e-04	ci right 2.309315e-04	k: 251	n:1230000
UBAP2L   1230000 perm   750 sec   (1640 perm/sec)   p_kst 2.040650e-04   p_cons 6.663244e-01   p_joint 3.268293e-04

Joint ci ratio: 1.942752e-01	ci left: 2.963459e-04	ci right 3.608643e-04	k: 406	n:1240000
Cons ci ratio: 2.491056e-03	ci left: 6.655048e-01	ci right 6.671654e-01	k: 826256	n:1240000
KS ci ratio: 2.459374e-01	ci left: 1.796655e-04	ci right 2.307814e-04	k: 253	n:1240000
UBAP2L   1240000 perm   760 sec   (1631 perm/sec)   p_kst 2.040323e-04   p_cons 6.663355e-01   p_joint 3.274194e-04

Joint ci ratio: 1.930926e-01	ci left: 2.977812e-04	ci right 3.621711e-04	k: 411	n:1250000
Cons ci ratio: 2.480868e-03	ci left: 6.655446e-01	ci right 6.671986e-01	k: 832965	n:1250000
KS ci ratio: 2.435516e-01	ci left: 1.819829e-04	ci right 2.331800e-04	k: 258	n:1250000
UBAP2L   1250000 perm   771 sec   (1622 perm/sec)   p_kst 2.064000e-04   p_cons 6.663720e-01   p_joint 3.288000e-04

Joint ci ratio: 1.987211e-01	ci left: 2.780587e-04	ci right 3.401491e-04	k: 388	n:1260000
Cons ci ratio: 2.471214e-03	ci left: 6.655100e-01	ci right 6.671575e-01	k: 839581	n:1260000
KS ci ratio: 2.435518e-01	ci left: 1.805385e-04	ci right 2.313293e-04	k: 258	n:1260000
UBAP2L   1260000 perm   781 sec   (1613 perm/sec)   p_kst 2.047619e-04   p_cons 6.663341e-01   p_joint 3.079365e-04

Joint ci ratio: 2.010616e-01	ci left: 2.691372e-04	ci right 3.300301e-04	k: 379	n:1270000
Cons ci ratio: 2.461258e-03	ci left: 6.655508e-01	ci right 6.671917e-01	k: 846292	n:1270000
KS ci ratio: 2.421533e-01	ci left: 1.813355e-04	ci right 2.320135e-04	k: 261	n:1270000
UBAP2L   1270000 perm   792 sec   (1604 perm/sec)   p_kst 2.055118e-04   p_cons 6.663717e-01   p_joint 2.984252e-04

Joint ci ratio: 1.994926e-01	ci left: 2.714870e-04	ci right 3.323740e-04	k: 385	n:1280000
Cons ci ratio: 2.451249e-03	ci left: 6.656223e-01	ci right 6.672566e-01	k: 853043	n:1280000
KS ci ratio: 2.407787e-01	ci left: 1.821207e-04	ci right 2.326862e-04	k: 264	n:1280000
UBAP2L   1280000 perm   803 sec   (1595 perm/sec)   p_kst 2.062500e-04   p_cons 6.664398e-01   p_joint 3.007812e-04

Joint ci ratio: 2.071496e-01	ci left: 2.487814e-04	ci right 3.069893e-04	k: 357	n:1290000
Cons ci ratio: 2.442178e-03	ci left: 6.655437e-01	ci right 6.671718e-01	k: 859602	n:1290000
KS ci ratio: 2.376598e-01	ci left: 1.858101e-04	ci right 2.366333e-04	k: 271	n:1290000
UBAP2L   1290000 perm   813 sec   (1586 perm/sec)   p_kst 2.100775e-04   p_cons 6.663581e-01   p_joint 2.767442e-04

Joint ci ratio: 1.754496e-01	ci left: 3.501720e-04	ci right 4.182400e-04	k: 498	n:1300000
Cons ci ratio: 2.433039e-03	ci left: 6.654971e-01	ci right 6.671190e-01	k: 866201	n:1300000
KS ci ratio: 2.363598e-01	ci left: 1.865515e-04	ci right 2.372575e-04	k: 274	n:1300000
UBAP2L   1300000 perm   825 sec   (1577 perm/sec)   p_kst 2.107692e-04   p_cons 6.663085e-01   p_joint 3.830769e-04

Joint ci ratio: 1.752742e-01	ci left: 3.482288e-04	ci right 4.158442e-04	k: 499	n:1310000
Cons ci ratio: 2.423989e-03	ci left: 6.654536e-01	ci right 6.670693e-01	k: 872803	n:1310000
KS ci ratio: 2.359313e-01	ci left: 1.858456e-04	ci right 2.362549e-04	k: 275	n:1310000
UBAP2L   1310000 perm   836 sec   (1568 perm/sec)   p_kst 2.099237e-04   p_cons 6.662618e-01   p_joint 3.809160e-04

Joint ci ratio: 1.744043e-01	ci left: 3.492128e-04	ci right 4.166473e-04	k: 504	n:1320000
Cons ci ratio: 2.414661e-03	ci left: 6.654805e-01	ci right 6.670900e-01	k: 879497	n:1320000
KS ci ratio: 2.346594e-01	ci left: 1.865765e-04	ci right 2.368715e-04	k: 278	n:1320000
UBAP2L   1320000 perm   847 sec   (1559 perm/sec)   p_kst 2.106061e-04   p_cons 6.662856e-01   p_joint 3.818182e-04

Joint ci ratio: 1.750996e-01	ci left: 3.437111e-04	ci right 4.103758e-04	k: 500	n:1330000
Cons ci ratio: 2.405793e-03	ci left: 6.654415e-01	ci right 6.670450e-01	k: 886104	n:1330000
KS ci ratio: 2.342401e-01	ci left: 1.858814e-04	ci right 2.358865e-04	k: 279	n:1330000
UBAP2L   1330000 perm   858 sec   (1551 perm/sec)   p_kst 2.097744e-04   p_cons 6.662436e-01   p_joint 3.759398e-04

Joint ci ratio: 1.749253e-01	ci left: 3.418596e-04	ci right 4.080923e-04	k: 501	n:1340000
Cons ci ratio: 2.396934e-03	ci left: 6.654195e-01	ci right 6.670171e-01	k: 892733	n:1340000
KS ci ratio: 2.338230e-01	ci left: 1.851967e-04	ci right 2.349161e-04	k: 280	n:1340000
UBAP2L   1340000 perm   869 sec   (1542 perm/sec)   p_kst 2.089552e-04   p_cons 6.662187e-01   p_joint 3.738806e-04

Joint ci ratio: 1.864248e-01	ci left: 2.968902e-04	ci right 3.586200e-04	k: 441	n:1350000
Cons ci ratio: 2.387925e-03	ci left: 6.654438e-01	ci right 6.670355e-01	k: 899424	n:1350000
KS ci ratio: 2.317698e-01	ci left: 1.873126e-04	ci right 2.370953e-04	k: 285	n:1350000
UBAP2L   1350000 perm   880 sec   (1534 perm/sec)   p_kst 2.111111e-04   p_cons 6.662400e-01   p_joint 3.266667e-04

Joint ci ratio: 1.857953e-01	ci left: 2.968103e-04	ci right 3.582916e-04	k: 444	n:1360000
Cons ci ratio: 2.379246e-03	ci left: 6.654251e-01	ci right 6.670109e-01	k: 906057	n:1360000
KS ci ratio: 2.309637e-01	ci left: 1.873207e-04	ci right 2.369076e-04	k: 287	n:1360000
UBAP2L   1360000 perm   891 sec   (1526 perm/sec)   p_kst 2.110294e-04   p_cons 6.662184e-01   p_joint 3.264706e-04

Joint ci ratio: 1.371865e-01	ci left: 5.547552e-04	ci right 6.371608e-04	k: 815	n:1370000
Cons ci ratio: 2.370504e-03	ci left: 6.654359e-01	ci right 6.670159e-01	k: 912730	n:1370000
KS ci ratio: 2.293761e-01	ci left: 1.887047e-04	ci right 2.382661e-04	k: 291	n:1370000
UBAP2L   1370000 perm   903 sec   (1518 perm/sec)   p_kst 2.124088e-04   p_cons 6.662263e-01   p_joint 5.948905e-04

Joint ci ratio: 1.368516e-01	ci left: 5.535344e-04	ci right 6.355416e-04	k: 819	n:1380000
Cons ci ratio: 2.361843e-03	ci left: 6.654495e-01	ci right 6.670237e-01	k: 919407	n:1380000
KS ci ratio: 2.285946e-01	ci left: 1.887035e-04	ci right 2.380718e-04	k: 293	n:1380000
UBAP2L   1380000 perm   914 sec   (1510 perm/sec)   p_kst 2.123188e-04   p_cons 6.662370e-01   p_joint 5.934783e-04

Joint ci ratio: 1.366852e-01	ci left: 5.509417e-04	ci right 6.324575e-04	k: 821	n:1390000
Cons ci ratio: 2.353573e-03	ci left: 6.654067e-01	ci right 6.669753e-01	k: 926006	n:1390000
KS ci ratio: 2.282069e-01	ci left: 1.880241e-04	ci right 2.371196e-04	k: 294	n:1390000
UBAP2L   1390000 perm   926 sec   (1502 perm/sec)   p_kst 2.115108e-04   p_cons 6.661914e-01   p_joint 5.906475e-04

Joint ci ratio: 1.361891e-01	ci left: 5.511458e-04	ci right 6.323718e-04	k: 827	n:1400000
Cons ci ratio: 2.345356e-03	ci left: 6.653710e-01	ci right 6.669340e-01	k: 932614	n:1400000
KS ci ratio: 2.270553e-01	ci left: 1.887018e-04	ci right 2.376907e-04	k: 297	n:1400000
UBAP2L   1400000 perm   937 sec   (1493 perm/sec)   p_kst 2.121429e-04   p_cons 6.661529e-01   p_joint 5.907143e-04

Joint ci ratio: 1.352125e-01	ci left: 5.554588e-04	ci right 6.366862e-04	k: 839	n:1410000
Cons ci ratio: 2.336802e-03	ci left: 6.654160e-01	ci right 6.669734e-01	k: 939335	n:1410000
KS ci ratio: 2.259208e-01	ci left: 1.893704e-04	ci right 2.382531e-04	k: 300	n:1410000
UBAP2L   1410000 perm   949 sec   (1485 perm/sec)   p_kst 2.127660e-04   p_cons 6.661950e-01   p_joint 5.950355e-04

Joint ci ratio: 1.347322e-01	ci left: 5.556298e-04	ci right 6.365705e-04	k: 845	n:1420000
Cons ci ratio: 2.328427e-03	ci left: 6.654441e-01	ci right 6.669960e-01	k: 946033	n:1420000
KS ci ratio: 2.251740e-01	ci left: 1.893657e-04	ci right 2.380631e-04	k: 302	n:1420000
UBAP2L   1420000 perm   961 sec   (1478 perm/sec)   p_kst 2.126761e-04   p_cons 6.662204e-01   p_joint 5.950704e-04

Joint ci ratio: 1.343358e-01	ci left: 5.551231e-04	ci right 6.357331e-04	k: 850	n:1430000
Cons ci ratio: 2.320184e-03	ci left: 6.654635e-01	ci right 6.670100e-01	k: 952719	n:1430000
KS ci ratio: 2.244345e-01	ci left: 1.893613e-04	ci right 2.378756e-04	k: 304	n:1430000
UBAP2L   1430000 perm   972 sec   (1471 perm/sec)   p_kst 2.125874e-04   p_cons 6.662371e-01   p_joint 5.944056e-04

Joint ci ratio: 1.337867e-01	ci left: 5.559662e-04	ci right 6.363423e-04	k: 857	n:1440000
Cons ci ratio: 2.311827e-03	ci left: 6.655215e-01	ci right 6.670625e-01	k: 959461	n:1440000
KS ci ratio: 2.229770e-01	ci left: 1.906685e-04	ci right 2.391568e-04	k: 308	n:1440000
UBAP2L   1440000 perm   984 sec   (1464 perm/sec)   p_kst 2.138889e-04   p_cons 6.662924e-01   p_joint 5.951389e-04

Joint ci ratio: 1.349727e-01	ci left: 5.421346e-04	ci right 6.212616e-04	k: 842	n:1450000
Cons ci ratio: 2.303876e-03	ci left: 6.655173e-01	ci right 6.670530e-01	k: 966114	n:1450000
KS ci ratio: 2.219023e-01	ci left: 1.913072e-04	ci right 2.396915e-04	k: 311	n:1450000
UBAP2L   1450000 perm   995 sec   (1457 perm/sec)   p_kst 2.144828e-04   p_cons 6.662855e-01   p_joint 5.806897e-04

Joint ci ratio: 1.343367e-01	ci left: 5.437162e-04	ci right 6.226703e-04	k: 850	n:1460000
Cons ci ratio: 2.295895e-03	ci left: 6.655351e-01	ci right 6.670656e-01	k: 972799	n:1460000
KS ci ratio: 2.211945e-01	ci left: 1.912907e-04	ci right 2.394955e-04	k: 313	n:1460000
UBAP2L   1460000 perm   1007 sec   (1450 perm/sec)   p_kst 2.143836e-04   p_cons 6.663007e-01   p_joint 5.821918e-04

Joint ci ratio: 1.388158e-01	ci left: 5.045369e-04	ci right 5.804466e-04	k: 796	n:1470000
Cons ci ratio: 2.287936e-03	ci left: 6.655643e-01	ci right 6.670895e-01	k: 979501	n:1470000
KS ci ratio: 2.208432e-01	ci left: 1.906320e-04	ci right 2.385842e-04	k: 314	n:1470000
UBAP2L   1470000 perm   1019 sec   (1443 perm/sec)   p_kst 2.136054e-04   p_cons 6.663272e-01   p_joint 5.414966e-04

Joint ci ratio: 2.071533e-01	ci left: 2.168429e-04	ci right 2.675790e-04	k: 357	n:1480000
Cons ci ratio: 2.280135e-03	ci left: 6.655782e-01	ci right 6.670982e-01	k: 986181	n:1480000
KS ci ratio: 2.363629e-01	ci left: 1.638626e-04	ci right 2.084022e-04	k: 274	n:1480000
UBAP2L   1480000 perm   1030 sec   (1436 perm/sec)   p_kst 1.851351e-04   p_cons 6.663385e-01   p_joint 2.412162e-04

Joint ci ratio: 2.062907e-01	ci left: 2.172967e-04	ci right 2.679007e-04	k: 360	n:1490000
Cons ci ratio: 2.272657e-03	ci left: 6.655442e-01	ci right 6.670591e-01	k: 992790	n:1490000
KS ci ratio: 2.355080e-01	ci left: 1.640258e-04	ci right 2.084250e-04	k: 276	n:1490000
UBAP2L   1490000 perm   1042 sec   (1429 perm/sec)   p_kst 1.852349e-04   p_cons 6.663020e-01   p_joint 2.416107e-04

Joint ci ratio: 2.060057e-01	ci left: 2.164803e-04	ci right 2.668157e-04	k: 361	n:1500000
Cons ci ratio: 2.264831e-03	ci left: 6.655934e-01	ci right 6.671032e-01	k: 999523	n:1500000
KS ci ratio: 2.355081e-01	ci left: 1.629323e-04	ci right 2.070355e-04	k: 276	n:1500000
UBAP2L   1500000 perm   1054 sec   (1423 perm/sec)   p_kst 1.840000e-04   p_cons 6.663487e-01   p_joint 2.406667e-04

Joint ci ratio: 2.045974e-01	ci left: 2.181878e-04	ci right 2.685299e-04	k: 366	n:1510000
Cons ci ratio: 2.257331e-03	ci left: 6.655936e-01	ci right 6.670984e-01	k: 1006183	n:1510000
KS ci ratio: 2.334107e-01	ci left: 1.649700e-04	ci right 2.091698e-04	k: 281	n:1510000
UBAP2L   1510000 perm   1066 sec   (1416 perm/sec)   p_kst 1.860927e-04   p_cons 6.663464e-01   p_joint 2.423841e-04

Joint ci ratio: 2.037662e-01	ci left: 2.186251e-04	ci right 2.688377e-04	k: 369	n:1520000
Cons ci ratio: 2.249905e-03	ci left: 6.655938e-01	ci right 6.670937e-01	k: 1012843	n:1520000
KS ci ratio: 2.321789e-01	ci left: 1.657433e-04	ci right 2.098823e-04	k: 284	n:1520000
UBAP2L   1520000 perm   1078 sec   (1410 perm/sec)   p_kst 1.868421e-04   p_cons 6.663441e-01   p_joint 2.427632e-04

Joint ci ratio: 2.034915e-01	ci left: 2.178164e-04	ci right 2.677675e-04	k: 370	n:1530000
Cons ci ratio: 2.242532e-03	ci left: 6.655980e-01	ci right 6.670929e-01	k: 1019509	n:1530000
KS ci ratio: 2.317727e-01	ci left: 1.652756e-04	ci right 2.092020e-04	k: 285	n:1530000
UBAP2L   1530000 perm   1090 sec   (1403 perm/sec)   p_kst 1.862745e-04   p_cons 6.663458e-01   p_joint 2.418301e-04

Joint ci ratio: 2.029453e-01	ci left: 2.176347e-04	ci right 2.673935e-04	k: 372	n:1540000
Cons ci ratio: 2.235267e-03	ci left: 6.655949e-01	ci right 6.670850e-01	k: 1026164	n:1540000
KS ci ratio: 2.313686e-01	ci left: 1.648141e-04	ci right 2.085305e-04	k: 286	n:1540000
UBAP2L   1540000 perm   1103 sec   (1397 perm/sec)   p_kst 1.857143e-04   p_cons 6.663403e-01   p_joint 2.415584e-04

Joint ci ratio: 2.060065e-01	ci left: 2.094970e-04	ci right 2.582089e-04	k: 361	n:1550000
Cons ci ratio: 2.228001e-03	ci left: 6.656061e-01	ci right 6.670913e-01	k: 1032841	n:1550000
KS ci ratio: 2.309667e-01	ci left: 1.643585e-04	ci right 2.078676e-04	k: 287	n:1550000
UBAP2L   1550000 perm   1115 sec   (1390 perm/sec)   p_kst 1.851613e-04   p_cons 6.663490e-01   p_joint 2.329032e-04

Joint ci ratio: 2.051581e-01	ci left: 2.099782e-04	ci right 2.585756e-04	k: 364	n:1560000
Cons ci ratio: 2.220664e-03	ci left: 6.656454e-01	ci right 6.671258e-01	k: 1039562	n:1560000
KS ci ratio: 2.297730e-01	ci left: 1.651171e-04	ci right 2.085690e-04	k: 290	n:1560000
UBAP2L   1560000 perm   1128 sec   (1384 perm/sec)   p_kst 1.858974e-04   p_cons 6.663859e-01   p_joint 2.333333e-04

Joint ci ratio: 2.037670e-01	ci left: 2.116624e-04	ci right 2.602761e-04	k: 369	n:1570000
Cons ci ratio: 2.213469e-03	ci left: 6.656701e-01	ci right 6.671458e-01	k: 1046261	n:1570000
KS ci ratio: 2.285976e-01	ci left: 1.658665e-04	ci right 2.092609e-04	k: 293	n:1570000
UBAP2L   1570000 perm   1140 sec   (1377 perm/sec)   p_kst 1.866242e-04   p_cons 6.664083e-01   p_joint 2.350318e-04

Joint ci ratio: 2.032185e-01	ci left: 2.115241e-04	ci right 2.599591e-04	k: 371	n:1580000
Cons ci ratio: 2.206290e-03	ci left: 6.657054e-01	ci right 6.671763e-01	k: 1052977	n:1580000
KS ci ratio: 2.278240e-01	ci left: 1.660102e-04	ci right 2.092745e-04	k: 295	n:1580000
UBAP2L   1580000 perm   1153 sec   (1371 perm/sec)   p_kst 1.867089e-04   p_cons 6.664411e-01   p_joint 2.348101e-04

Joint ci ratio: 1.989835e-01	ci left: 2.197501e-04	ci right 2.688928e-04	k: 387	n:1590000
Cons ci ratio: 2.199523e-03	ci left: 6.656709e-01	ci right 6.671373e-01	k: 1059583	n:1590000
KS ci ratio: 2.266781e-01	ci left: 1.667455e-04	ci right 2.099523e-04	k: 298	n:1590000
UBAP2L   1590000 perm   1165 sec   (1365 perm/sec)   p_kst 1.874214e-04   p_cons 6.664044e-01   p_joint 2.433962e-04

Joint ci ratio: 1.984727e-01	ci left: 2.195645e-04	ci right 2.685244e-04	k: 389	n:1600000
Cons ci ratio: 2.192845e-03	ci left: 6.656313e-01	ci right 6.670931e-01	k: 1066180	n:1600000
KS ci ratio: 2.263000e-01	ci left: 1.662929e-04	ci right 2.093005e-04	k: 299	n:1600000
UBAP2L   1600000 perm   1178 sec   (1359 perm/sec)   p_kst 1.868750e-04   p_cons 6.663625e-01   p_joint 2.431250e-04

Joint ci ratio: 1.977136e-01	ci left: 2.199717e-04	ci right 2.688122e-04	k: 392	n:1610000
Cons ci ratio: 2.185874e-03	ci left: 6.656642e-01	ci right 6.671215e-01	k: 1072893	n:1610000
KS ci ratio: 2.263001e-01	ci left: 1.652600e-04	ci right 2.080005e-04	k: 299	n:1610000
UBAP2L   1610000 perm   1190 sec   (1352 perm/sec)   p_kst 1.857143e-04   p_cons 6.663932e-01   p_joint 2.434783e-04

Joint ci ratio: 1.967150e-01	ci left: 2.209611e-04	ci right 2.697437e-04	k: 396	n:1620000
Cons ci ratio: 2.179123e-03	ci left: 6.656653e-01	ci right 6.671180e-01	k: 1079555	n:1620000
KS ci ratio: 2.248063e-01	ci left: 1.665695e-04	ci right 2.093250e-04	k: 303	n:1620000
UBAP2L   1620000 perm   1203 sec   (1346 perm/sec)   p_kst 1.870370e-04   p_cons 6.663920e-01   p_joint 2.444444e-04

Joint ci ratio: 1.959759e-01	ci left: 2.213555e-04	ci right 2.700197e-04	k: 399	n:1630000
Cons ci ratio: 2.172527e-03	ci left: 6.656473e-01	ci right 6.670956e-01	k: 1086186	n:1630000
KS ci ratio: 2.240704e-01	ci left: 1.667056e-04	ci right 2.093366e-04	k: 305	n:1630000
UBAP2L   1630000 perm   1216 sec   (1340 perm/sec)   p_kst 1.871166e-04   p_cons 6.663718e-01   p_joint 2.447853e-04

Joint ci ratio: 1.940447e-01	ci left: 2.246457e-04	ci right 2.734891e-04	k: 407	n:1640000
Cons ci ratio: 2.166142e-03	ci left: 6.655985e-01	ci right 6.670424e-01	k: 1092766	n:1640000
KS ci ratio: 2.215503e-01	ci left: 1.697192e-04	ci right 2.125662e-04	k: 312	n:1640000
UBAP2L   1640000 perm   1229 sec   (1334 perm/sec)   p_kst 1.902439e-04   p_cons 6.663207e-01   p_joint 2.481707e-04

Joint ci ratio: 1.931004e-01	ci left: 2.255910e-04	ci right 2.743732e-04	k: 411	n:1650000
Cons ci ratio: 2.159248e-03	ci left: 6.656666e-01	ci right 6.671061e-01	k: 1099538	n:1650000
KS ci ratio: 2.208458e-01	ci left: 1.698356e-04	ci right 2.125571e-04	k: 314	n:1650000
UBAP2L   1650000 perm   1242 sec   (1329 perm/sec)   p_kst 1.903030e-04   p_cons 6.663867e-01   p_joint 2.490909e-04

Joint ci ratio: 1.926334e-01	ci left: 2.253786e-04	ci right 2.739832e-04	k: 413	n:1660000
Cons ci ratio: 2.152704e-03	ci left: 6.656749e-01	ci right 6.671100e-01	k: 1106212	n:1660000
KS ci ratio: 2.204962e-01	ci left: 1.693816e-04	ci right 2.119123e-04	k: 315	n:1660000
UBAP2L   1660000 perm   1255 sec   (1323 perm/sec)   p_kst 1.897590e-04   p_cons 6.663928e-01   p_joint 2.487952e-04

Joint ci ratio: 1.924013e-01	ci left: 2.245990e-04	ci right 2.729703e-04	k: 414	n:1670000
Cons ci ratio: 2.146333e-03	ci left: 6.656597e-01	ci right 6.670906e-01	k: 1112847	n:1670000
KS ci ratio: 2.201482e-01	ci left: 1.689331e-04	ci right 2.112752e-04	k: 316	n:1670000
UBAP2L   1670000 perm   1268 sec   (1317 perm/sec)   p_kst 1.892216e-04   p_cons 6.663754e-01   p_joint 2.479042e-04

Joint ci ratio: 1.910251e-01	ci left: 2.266621e-04	ci right 2.750880e-04	k: 420	n:1680000
Cons ci ratio: 2.139915e-03	ci left: 6.656662e-01	ci right 6.670928e-01	k: 1119518	n:1680000
KS ci ratio: 2.187721e-01	ci left: 1.701777e-04	ci right 2.125292e-04	k: 320	n:1680000
UBAP2L   1680000 perm   1281 sec   (1311 perm/sec)   p_kst 1.904762e-04   p_cons 6.663798e-01   p_joint 2.500000e-04

Joint ci ratio: 1.907987e-01	ci left: 2.258844e-04	ci right 2.740803e-04	k: 421	n:1690000
Cons ci ratio: 2.133418e-03	ci left: 6.657010e-01	ci right 6.671233e-01	k: 1126237	n:1690000
KS ci ratio: 2.184322e-01	ci left: 1.697300e-04	ci right 2.118957e-04	k: 321	n:1690000
UBAP2L   1690000 perm   1295 sec   (1306 perm/sec)   p_kst 1.899408e-04   p_cons 6.664124e-01   p_joint 2.491124e-04

Joint ci ratio: 1.907989e-01	ci left: 2.245556e-04	ci right 2.724681e-04	k: 421	n:1700000
Cons ci ratio: 2.127264e-03	ci left: 6.656759e-01	ci right 6.670941e-01	k: 1132855	n:1700000
KS ci ratio: 2.184323e-01	ci left: 1.687316e-04	ci right 2.106493e-04	k: 321	n:1700000
UBAP2L   1700000 perm   1308 sec   (1300 perm/sec)   p_kst 1.888235e-04   p_cons 6.663853e-01   p_joint 2.476471e-04

Joint ci ratio: 1.905733e-01	ci left: 2.237993e-04	ci right 2.714874e-04	k: 422	n:1710000
Cons ci ratio: 2.120908e-03	ci left: 6.657044e-01	ci right 6.671184e-01	k: 1139564	n:1710000
KS ci ratio: 2.180940e-01	ci left: 1.682977e-04	ci right 2.100341e-04	k: 322	n:1710000
UBAP2L   1710000 perm   1321 sec   (1294 perm/sec)   p_kst 1.883041e-04   p_cons 6.664117e-01   p_joint 2.467836e-04

Joint ci ratio: 1.749326e-01	ci left: 2.663316e-04	ci right 3.179336e-04	k: 501	n:1720000
Cons ci ratio: 2.114776e-03	ci left: 6.656977e-01	ci right 6.671076e-01	k: 1146213	n:1720000
KS ci ratio: 2.177572e-01	ci left: 1.678689e-04	ci right 2.094261e-04	k: 323	n:1720000
UBAP2L   1720000 perm   1335 sec   (1289 perm/sec)   p_kst 1.877907e-04   p_cons 6.664029e-01   p_joint 2.912791e-04

Joint ci ratio: 1.747587e-01	ci left: 2.653448e-04	ci right 3.166991e-04	k: 502	n:1730000
Cons ci ratio: 2.108652e-03	ci left: 6.657003e-01	ci right 6.671061e-01	k: 1152878	n:1730000
KS ci ratio: 2.174220e-01	ci left: 1.674450e-04	ci right 2.088250e-04	k: 324	n:1730000
UBAP2L   1730000 perm   1348 sec   (1283 perm/sec)   p_kst 1.872832e-04   p_cons 6.664035e-01   p_joint 2.901734e-04

Joint ci ratio: 1.744123e-01	ci left: 2.649191e-04	ci right 3.160786e-04	k: 504	n:1740000
Cons ci ratio: 2.102579e-03	ci left: 6.657035e-01	ci right 6.671052e-01	k: 1159544	n:1740000
KS ci ratio: 2.167561e-01	ci left: 1.675697e-04	ci right 2.088367e-04	k: 326	n:1740000
UBAP2L   1740000 perm   1362 sec   (1278 perm/sec)   p_kst 1.873563e-04   p_cons 6.664046e-01   p_joint 2.896552e-04

Joint ci ratio: 1.740680e-01	ci left: 2.644982e-04	ci right 3.154651e-04	k: 506	n:1750000
Cons ci ratio: 2.096784e-03	ci left: 6.656586e-01	ci right 6.670563e-01	k: 1166126	n:1750000
KS ci ratio: 2.164254e-01	ci left: 1.671525e-04	ci right 2.082457e-04	k: 327	n:1750000
UBAP2L   1750000 perm   1375 sec   (1272 perm/sec)   p_kst 1.868571e-04   p_cons 6.663577e-01   p_joint 2.891429e-04

Joint ci ratio: 1.735553e-01	ci left: 2.646258e-04	ci right 3.154513e-04	k: 509	n:1760000
Cons ci ratio: 2.090641e-03	ci left: 6.656983e-01	ci right 6.670920e-01	k: 1172856	n:1760000
KS ci ratio: 2.154424e-01	ci left: 1.678152e-04	ci right 2.088591e-04	k: 330	n:1760000
UBAP2L   1760000 perm   1389 sec   (1267 perm/sec)   p_kst 1.875000e-04   p_cons 6.663955e-01   p_joint 2.892045e-04

Joint ci ratio: 1.727107e-01	ci left: 2.658332e-04	ci right 3.166162e-04	k: 514	n:1770000
Cons ci ratio: 2.084666e-03	ci left: 6.657133e-01	ci right 6.671031e-01	k: 1179543	n:1770000
KS ci ratio: 2.151177e-01	ci left: 1.674016e-04	ci right 2.082745e-04	k: 331	n:1770000
UBAP2L   1770000 perm   1403 sec   (1261 perm/sec)   p_kst 1.870056e-04   p_cons 6.664085e-01   p_joint 2.903955e-04

Joint ci ratio: 1.723763e-01	ci left: 2.654148e-04	ci right 3.160096e-04	k: 516	n:1780000
Cons ci ratio: 2.078671e-03	ci left: 6.657433e-01	ci right 6.671292e-01	k: 1186257	n:1780000
KS ci ratio: 2.147945e-01	ci left: 1.669927e-04	ci right 2.076964e-04	k: 332	n:1780000
UBAP2L   1780000 perm   1418 sec   (1256 perm/sec)   p_kst 1.865169e-04   p_cons 6.664365e-01   p_joint 2.898876e-04

Joint ci ratio: 1.728789e-01	ci left: 2.623285e-04	ci right 3.124959e-04	k: 513	n:1790000
Cons ci ratio: 2.072837e-03	ci left: 6.657495e-01	ci right 6.671315e-01	k: 1192929	n:1790000
KS ci ratio: 2.131997e-01	ci left: 1.687034e-04	ci right 2.094788e-04	k: 337	n:1790000
UBAP2L   1790000 perm   1432 sec   (1250 perm/sec)   p_kst 1.882682e-04   p_cons 6.664408e-01   p_joint 2.865922e-04

Joint ci ratio: 1.723766e-01	ci left: 2.624658e-04	ci right 3.124984e-04	k: 516	n:1800000
Cons ci ratio: 2.066974e-03	ci left: 6.657724e-01	ci right 6.671504e-01	k: 1199631	n:1800000
KS ci ratio: 2.122597e-01	ci left: 1.693440e-04	ci right 2.100704e-04	k: 340	n:1800000
UBAP2L   1800000 perm   1446 sec   (1245 perm/sec)   p_kst 1.888889e-04   p_cons 6.664617e-01   p_joint 2.866667e-04

Joint ci ratio: 1.713848e-01	ci left: 2.641880e-04	ci right 3.142293e-04	k: 522	n:1810000
Cons ci ratio: 2.061401e-03	ci left: 6.657430e-01	ci right 6.671173e-01	k: 1206239	n:1810000
KS ci ratio: 2.113321e-01	ci left: 1.699780e-04	ci right 2.106550e-04	k: 343	n:1810000
UBAP2L   1810000 perm   1460 sec   (1240 perm/sec)   p_kst 1.895028e-04   p_cons 6.664304e-01   p_joint 2.883978e-04

Joint ci ratio: 1.708954e-01	ci left: 2.643142e-04	ci right 3.142216e-04	k: 525	n:1820000
Cons ci ratio: 2.055690e-03	ci left: 6.657535e-01	ci right 6.671240e-01	k: 1212919	n:1820000
KS ci ratio: 2.107204e-01	ci left: 1.700848e-04	ci right 2.106545e-04	k: 345	n:1820000
UBAP2L   1820000 perm   1474 sec   (1234 perm/sec)   p_kst 1.895604e-04   p_cons 6.664390e-01   p_joint 2.884615e-04

Joint ci ratio: 1.705714e-01	ci left: 2.639160e-04	ci right 3.136441e-04	k: 527	n:1830000
Cons ci ratio: 2.049835e-03	ci left: 6.658055e-01	ci right 6.671722e-01	k: 1219675	n:1830000
KS ci ratio: 2.101140e-01	ci left: 1.701907e-04	ci right 2.106537e-04	k: 347	n:1830000
UBAP2L   1830000 perm   1489 sec   (1229 perm/sec)   p_kst 1.896175e-04   p_cons 6.664891e-01   p_joint 2.879781e-04

Joint ci ratio: 1.705716e-01	ci left: 2.624817e-04	ci right 3.119395e-04	k: 527	n:1840000
Cons ci ratio: 2.044442e-03	ci left: 6.657671e-01	ci right 6.671302e-01	k: 1226266	n:1840000
KS ci ratio: 2.101141e-01	ci left: 1.692658e-04	ci right 2.095089e-04	k: 347	n:1840000
UBAP2L   1840000 perm   1503 sec   (1224 perm/sec)   p_kst 1.885870e-04   p_cons 6.664489e-01   p_joint 2.864130e-04

Joint ci ratio: 1.697695e-01	ci left: 2.636505e-04	ci right 3.130711e-04	k: 532	n:1850000
Cons ci ratio: 2.038645e-03	ci left: 6.658266e-01	ci right 6.671859e-01	k: 1233037	n:1850000
KS ci ratio: 2.089168e-01	ci left: 1.703996e-04	ci right 2.106518e-04	k: 351	n:1850000
UBAP2L   1850000 perm   1517 sec   (1219 perm/sec)   p_kst 1.897297e-04   p_cons 6.665065e-01   p_joint 2.875676e-04

Joint ci ratio: 1.691360e-01	ci left: 2.642923e-04	ci right 3.136295e-04	k: 536	n:1860000
Cons ci ratio: 2.033233e-03	ci left: 6.658117e-01	ci right 6.671673e-01	k: 1239671	n:1860000
KS ci ratio: 2.080321e-01	ci left: 1.710121e-04	ci right 2.112163e-04	k: 354	n:1860000
UBAP2L   1860000 perm   1532 sec   (1214 perm/sec)   p_kst 1.903226e-04   p_cons 6.664898e-01   p_joint 2.881720e-04

Joint ci ratio: 1.686655e-01	ci left: 2.644155e-04	ci right 3.136244e-04	k: 539	n:1870000
Cons ci ratio: 2.027838e-03	ci left: 6.658029e-01	ci right 6.671549e-01	k: 1246316	n:1870000
KS ci ratio: 2.074485e-01	ci left: 1.711115e-04	ci right 2.112119e-04	k: 356	n:1870000
UBAP2L   1870000 perm   1546 sec   (1209 perm/sec)   p_kst 1.903743e-04   p_cons 6.664791e-01   p_joint 2.882353e-04

Joint ci ratio: 1.681990e-01	ci left: 2.645375e-04	ci right 3.136191e-04	k: 542	n:1880000
Cons ci ratio: 2.022568e-03	ci left: 6.657761e-01	ci right 6.671245e-01	k: 1252927	n:1880000
KS ci ratio: 2.071587e-01	ci left: 1.707057e-04	ci right 2.106479e-04	k: 357	n:1880000
UBAP2L   1880000 perm   1561 sec   (1205 perm/sec)   p_kst 1.898936e-04   p_cons 6.664505e-01   p_joint 2.882979e-04

Joint ci ratio: 1.759901e-01	ci left: 2.393404e-04	ci right 2.860229e-04	k: 495	n:1890000
Cons ci ratio: 2.017087e-03	ci left: 6.658051e-01	ci right 6.671499e-01	k: 1259643	n:1890000
KS ci ratio: 2.071588e-01	ci left: 1.698024e-04	ci right 2.095334e-04	k: 357	n:1890000
UBAP2L   1890000 perm   1575 sec   (1200 perm/sec)   p_kst 1.888889e-04   p_cons 6.664778e-01   p_joint 2.619048e-04

Joint ci ratio: 1.751095e-01	ci left: 2.405966e-04	ci right 2.872646e-04	k: 500	n:1900000
Cons ci ratio: 2.011838e-03	ci left: 6.657922e-01	ci right 6.671336e-01	k: 1266280	n:1900000
KS ci ratio: 2.065825e-01	ci left: 1.699068e-04	ci right 2.095376e-04	k: 359	n:1900000
UBAP2L   1900000 perm   1590 sec   (1195 perm/sec)   p_kst 1.889474e-04   p_cons 6.664632e-01   p_joint 2.631579e-04

Joint ci ratio: 1.749351e-01	ci left: 2.398376e-04	ci right 2.863071e-04	k: 501	n:1910000
Cons ci ratio: 2.006611e-03	ci left: 6.657837e-01	ci right 6.671215e-01	k: 1272925	n:1910000
KS ci ratio: 2.062962e-01	ci left: 1.695138e-04	ci right 2.089912e-04	k: 360	n:1910000
UBAP2L   1910000 perm   1604 sec   (1191 perm/sec)   p_kst 1.884817e-04   p_cons 6.664529e-01   p_joint 2.623037e-04

Joint ci ratio: 1.749352e-01	ci left: 2.385884e-04	ci right 2.848159e-04	k: 501	n:1920000
Cons ci ratio: 2.001604e-03	ci left: 6.657352e-01	ci right 6.670695e-01	k: 1279493	n:1920000
KS ci ratio: 2.062963e-01	ci left: 1.686309e-04	ci right 2.079027e-04	k: 360	n:1920000
UBAP2L   1920000 perm   1619 sec   (1186 perm/sec)   p_kst 1.875000e-04   p_cons 6.664026e-01   p_joint 2.609375e-04

Joint ci ratio: 1.745878e-01	ci left: 2.383431e-04	ci right 2.844217e-04	k: 503	n:1930000
Cons ci ratio: 1.996494e-03	ci left: 6.657187e-01	ci right 6.670497e-01	k: 1286122	n:1930000
KS ci ratio: 2.060112e-01	ci left: 1.682485e-04	ci right 2.073703e-04	k: 361	n:1930000
UBAP2L   1930000 perm   1634 sec   (1181 perm/sec)   p_kst 1.870466e-04   p_cons 6.663845e-01   p_joint 2.606218e-04

Joint ci ratio: 1.742425e-01	ci left: 2.381005e-04	ci right 2.840315e-04	k: 505	n:1940000
Cons ci ratio: 1.991246e-03	ci left: 6.657417e-01	ci right 6.670692e-01	k: 1292827	n:1940000
KS ci ratio: 2.057273e-01	ci left: 1.678702e-04	ci right 2.068434e-04	k: 362	n:1940000
UBAP2L   1940000 perm   1649 sec   (1176 perm/sec)   p_kst 1.865979e-04   p_cons 6.664057e-01   p_joint 2.603093e-04

Joint ci ratio: 1.733878e-01	ci left: 2.393320e-04	ci right 2.852505e-04	k: 510	n:1950000
Cons ci ratio: 1.986169e-03	ci left: 6.657357e-01	ci right 6.670597e-01	k: 1299476	n:1950000
KS ci ratio: 2.043248e-01	ci left: 1.694418e-04	ci right 2.084782e-04	k: 367	n:1950000
UBAP2L   1950000 perm   1664 sec   (1172 perm/sec)   p_kst 1.882051e-04   p_cons 6.663979e-01   p_joint 2.615385e-04

Joint ci ratio: 1.727131e-01	ci left: 2.400634e-04	ci right 2.859242e-04	k: 514	n:1960000
Cons ci ratio: 1.981211e-03	ci left: 6.657113e-01	ci right 6.670320e-01	k: 1306089	n:1960000
KS ci ratio: 2.034969e-01	ci left: 1.700297e-04	ci right 2.090232e-04	k: 370	n:1960000
UBAP2L   1960000 perm   1679 sec   (1167 perm/sec)   p_kst 1.887755e-04   p_cons 6.663719e-01   p_joint 2.622449e-04

Joint ci ratio: 1.722122e-01	ci left: 2.403019e-04	ci right 2.860613e-04	k: 517	n:1970000
Cons ci ratio: 1.976250e-03	ci left: 6.656964e-01	ci right 6.670138e-01	k: 1312720	n:1970000
KS ci ratio: 2.032233e-01	ci left: 1.696484e-04	ci right 2.084956e-04	k: 371	n:1970000
UBAP2L   1970000 perm   1694 sec   (1163 perm/sec)   p_kst 1.883249e-04   p_cons 6.663553e-01   p_joint 2.624365e-04

Joint ci ratio: 1.737286e-01	ci left: 2.347395e-04	ci right 2.798746e-04	k: 508	n:1980000
Cons ci ratio: 1.971306e-03	ci left: 6.656862e-01	ci right 6.670002e-01	k: 1319360	n:1980000
KS ci ratio: 2.024087e-01	ci left: 1.702298e-04	ci right 2.090346e-04	k: 374	n:1980000
UBAP2L   1980000 perm   1710 sec   (1158 perm/sec)   p_kst 1.888889e-04   p_cons 6.663434e-01   p_joint 2.565657e-04

Joint ci ratio: 1.498591e-01	ci left: 3.179594e-04	ci right 3.699449e-04	k: 683	n:1990000
Cons ci ratio: 1.966401e-03	ci left: 6.656755e-01	ci right 6.669863e-01	k: 1325999	n:1990000
KS ci ratio: 2.016038e-01	ci left: 1.708057e-04	ci right 2.095678e-04	k: 377	n:1990000
UBAP2L   1990000 perm   1725 sec   (1154 perm/sec)   p_kst 1.894472e-04   p_cons 6.663312e-01   p_joint 3.432161e-04

Joint ci ratio: 1.494229e-01	ci left: 3.182947e-04	ci right 3.701700e-04	k: 687	n:2000000
Cons ci ratio: 1.961544e-03	ci left: 6.656625e-01	ci right 6.669700e-01	k: 1332633	n:2000000
KS ci ratio: 2.010726e-01	ci left: 1.709012e-04	ci right 2.095703e-04	k: 379	n:2000000
UBAP2L   2000000 perm   1740 sec   (1149 perm/sec)   p_kst 1.895000e-04   p_cons 6.663165e-01   p_joint 3.435000e-04

Joint ci ratio: 1.486683e-01	ci left: 3.200639e-04	ci right 3.719407e-04	k: 694	n:2010000
Cons ci ratio: 1.956455e-03	ci left: 6.657104e-01	ci right 6.670145e-01	k: 1339389	n:2010000
KS ci ratio: 2.002835e-01	ci left: 1.714685e-04	ci right 2.100951e-04	k: 382	n:2010000
UBAP2L   2010000 perm   1756 sec   (1145 perm/sec)   p_kst 1.900498e-04   p_cons 6.663627e-01   p_joint 3.452736e-04

Joint ci ratio: 1.484549e-01	ci left: 3.194327e-04	ci right 3.711263e-04	k: 696	n:2020000
Cons ci ratio: 1.951542e-03	ci left: 6.657265e-01	ci right 6.670275e-01	k: 1346082	n:2020000
KS ci ratio: 2.002836e-01	ci left: 1.706197e-04	ci right 2.090551e-04	k: 382	n:2020000
UBAP2L   2020000 perm   1771 sec   (1140 perm/sec)   p_kst 1.891089e-04   p_cons 6.663772e-01   p_joint 3.445545e-04

Joint ci ratio: 1.480308e-01	ci left: 3.197565e-04	ci right 3.713416e-04	k: 700	n:2030000
Cons ci ratio: 1.946826e-03	ci left: 6.657061e-01	ci right 6.670038e-01	k: 1352701	n:2030000
KS ci ratio: 1.992458e-01	ci left: 1.716511e-04	ci right 2.100941e-04	k: 386	n:2030000
UBAP2L   2030000 perm   1787 sec   (1136 perm/sec)   p_kst 1.901478e-04   p_cons 6.663552e-01   p_joint 3.448276e-04

Joint ci ratio: 1.479254e-01	ci left: 3.186611e-04	ci right 3.700296e-04	k: 701	n:2040000
Cons ci ratio: 1.942071e-03	ci left: 6.657025e-01	ci right 6.669970e-01	k: 1359354	n:2040000
KS ci ratio: 1.989889e-01	ci left: 1.712754e-04	ci right 2.095788e-04	k: 387	n:2040000
UBAP2L   2040000 perm   1802 sec   (1132 perm/sec)   p_kst 1.897059e-04   p_cons 6.663500e-01   p_joint 3.436275e-04

Joint ci ratio: 1.478202e-01	ci left: 3.175764e-04	ci right 3.687304e-04	k: 702	n:2050000
Cons ci ratio: 1.937341e-03	ci left: 6.657014e-01	ci right 6.669928e-01	k: 1366012	n:2050000
KS ci ratio: 1.987330e-01	ci left: 1.709034e-04	ci right 2.090686e-04	k: 388	n:2050000
UBAP2L   2050000 perm   1818 sec   (1128 perm/sec)   p_kst 1.892683e-04   p_cons 6.663473e-01   p_joint 3.424390e-04

Joint ci ratio: 1.486690e-01	ci left: 3.122953e-04	ci right 3.629131e-04	k: 694	n:2060000
Cons ci ratio: 1.932842e-03	ci left: 6.656546e-01	ci right 6.669430e-01	k: 1372576	n:2060000
KS ci ratio: 1.984781e-01	ci left: 1.705351e-04	ci right 2.085632e-04	k: 389	n:2060000
UBAP2L   2060000 perm   1833 sec   (1124 perm/sec)   p_kst 1.888350e-04   p_cons 6.662990e-01   p_joint 3.368932e-04

Joint ci ratio: 1.483491e-01	ci left: 3.121820e-04	ci right 3.626630e-04	k: 697	n:2070000
Cons ci ratio: 1.928093e-03	ci left: 6.656736e-01	ci right 6.669588e-01	k: 1379275	n:2070000
KS ci ratio: 1.979711e-01	ci left: 1.706295e-04	ci right 2.085697e-04	k: 391	n:2070000
UBAP2L   2070000 perm   1849 sec   (1119 perm/sec)   p_kst 1.888889e-04   p_cons 6.663164e-01   p_joint 3.367150e-04

Joint ci ratio: 1.481371e-01	ci left: 3.116070e-04	ci right 3.619166e-04	k: 699	n:2080000
Cons ci ratio: 1.923307e-03	ci left: 6.657087e-01	ci right 6.669908e-01	k: 1386008	n:2080000
KS ci ratio: 1.977191e-01	ci left: 1.702661e-04	ci right 2.080716e-04	k: 392	n:2080000
UBAP2L   2080000 perm   1865 sec   (1115 perm/sec)   p_kst 1.884615e-04   p_cons 6.663500e-01   p_joint 3.360577e-04

Joint ci ratio: 1.474018e-01	ci left: 3.133416e-04	ci right 3.636580e-04	k: 706	n:2090000
Cons ci ratio: 1.918691e-03	ci left: 6.657124e-01	ci right 6.669914e-01	k: 1392676	n:2090000
KS ci ratio: 1.969687e-01	ci left: 1.708159e-04	ci right 2.085822e-04	k: 395	n:2090000
UBAP2L   2090000 perm   1881 sec   (1111 perm/sec)   p_kst 1.889952e-04   p_cons 6.663522e-01   p_joint 3.377990e-04

Joint ci ratio: 1.472977e-01	ci left: 3.123081e-04	ci right 3.624200e-04	k: 707	n:2100000
Cons ci ratio: 1.913895e-03	ci left: 6.657656e-01	ci right 6.670415e-01	k: 1399448	n:2100000
KS ci ratio: 1.969688e-01	ci left: 1.700025e-04	ci right 2.075890e-04	k: 395	n:2100000
UBAP2L   2100000 perm   1897 sec   (1107 perm/sec)   p_kst 1.880952e-04   p_cons 6.664038e-01   p_joint 3.366667e-04

Joint ci ratio: 1.470902e-01	ci left: 3.117409e-04	ci right 3.616852e-04	k: 709	n:2110000
Cons ci ratio: 1.909434e-03	ci left: 6.657486e-01	ci right 6.670215e-01	k: 1406073	n:2110000
KS ci ratio: 1.967206e-01	ci left: 1.696474e-04	ci right 2.071024e-04	k: 396	n:2110000
UBAP2L   2110000 perm   1913 sec   (1103 perm/sec)   p_kst 1.876777e-04   p_cons 6.663853e-01   p_joint 3.360190e-04

Joint ci ratio: 1.464725e-01	ci left: 3.129967e-04	ci right 3.629131e-04	k: 715	n:2120000
Cons ci ratio: 1.904997e-03	ci left: 6.657332e-01	ci right 6.670031e-01	k: 1412701	n:2120000
KS ci ratio: 1.959815e-01	ci left: 1.701927e-04	ci right 2.076101e-04	k: 399	n:2120000
UBAP2L   2120000 perm   1929 sec   (1099 perm/sec)   p_kst 1.882075e-04   p_cons 6.663684e-01   p_joint 3.372642e-04

Joint ci ratio: 1.459637e-01	ci left: 3.137888e-04	ci right 3.636425e-04	k: 720	n:2130000
Cons ci ratio: 1.900554e-03	ci left: 6.657269e-01	ci right 6.669938e-01	k: 1419348	n:2130000
KS ci ratio: 1.954933e-01	ci left: 1.702866e-04	ci right 2.076203e-04	k: 401	n:2130000
UBAP2L   2130000 perm   1946 sec   (1095 perm/sec)   p_kst 1.882629e-04   p_cons 6.663606e-01   p_joint 3.380282e-04

Joint ci ratio: 1.458626e-01	ci left: 3.127727e-04	ci right 3.624276e-04	k: 721	n:2140000
Cons ci ratio: 1.896117e-03	ci left: 6.657262e-01	ci right 6.669902e-01	k: 1426007	n:2140000
KS ci ratio: 1.952507e-01	ci left: 1.699353e-04	ci right 2.071403e-04	k: 402	n:2140000
UBAP2L   2140000 perm   1962 sec   (1091 perm/sec)   p_kst 1.878505e-04   p_cons 6.663584e-01   p_joint 3.369159e-04

Joint ci ratio: 1.457618e-01	ci left: 3.117661e-04	ci right 3.612240e-04	k: 722	n:2150000
Cons ci ratio: 1.891624e-03	ci left: 6.657460e-01	ci right 6.670070e-01	k: 1432710	n:2150000
KS ci ratio: 1.950089e-01	ci left: 1.695873e-04	ci right 2.066646e-04	k: 403	n:2150000
UBAP2L   2150000 perm   1978 sec   (1087 perm/sec)   p_kst 1.874419e-04   p_cons 6.663767e-01   p_joint 3.358140e-04

Joint ci ratio: 1.456612e-01	ci left: 3.107688e-04	ci right 3.600315e-04	k: 723	n:2160000
Cons ci ratio: 1.887262e-03	ci left: 6.657425e-01	ci right 6.670006e-01	k: 1439363	n:2160000
KS ci ratio: 1.950090e-01	ci left: 1.688022e-04	ci right 2.057079e-04	k: 403	n:2160000
UBAP2L   2160000 perm   1995 sec   (1083 perm/sec)   p_kst 1.865741e-04   p_cons 6.663718e-01   p_joint 3.347222e-04

Joint ci ratio: 1.452605e-01	ci left: 3.111129e-04	ci right 3.602827e-04	k: 727	n:2170000
Cons ci ratio: 1.882841e-03	ci left: 6.657598e-01	ci right 6.670149e-01	k: 1446061	n:2170000
KS ci ratio: 1.945281e-01	ci left: 1.689010e-04	ci right 2.057264e-04	k: 405	n:2170000
UBAP2L   2170000 perm   2011 sec   (1079 perm/sec)   p_kst 1.866359e-04   p_cons 6.663876e-01   p_joint 3.350230e-04

Joint ci ratio: 1.449621e-01	ci left: 3.110119e-04	ci right 3.600561e-04	k: 730	n:2180000
Cons ci ratio: 1.878365e-03	ci left: 6.657975e-01	ci right 6.670497e-01	k: 1452804	n:2180000
KS ci ratio: 1.938133e-01	ci left: 1.694355e-04	ci right 2.062257e-04	k: 408	n:2180000
UBAP2L   2180000 perm   2028 sec   (1075 perm/sec)   p_kst 1.871560e-04   p_cons 6.664239e-01   p_joint 3.348624e-04

Joint ci ratio: 1.445671e-01	ci left: 3.113521e-04	ci right 3.603046e-04	k: 734	n:2190000
Cons ci ratio: 1.874018e-03	ci left: 6.658116e-01	ci right 6.670610e-01	k: 1459496	n:2190000
KS ci ratio: 1.928724e-01	ci left: 1.703999e-04	ci right 2.071988e-04	k: 412	n:2190000
UBAP2L   2190000 perm   2045 sec   (1071 perm/sec)   p_kst 1.881279e-04   p_cons 6.664365e-01   p_joint 3.351598e-04

Joint ci ratio: 1.442730e-01	ci left: 3.112513e-04	ci right 3.600798e-04	k: 737	n:2200000
Cons ci ratio: 1.869816e-03	ci left: 6.657983e-01	ci right 6.670449e-01	k: 1466128	n:2200000
KS ci ratio: 1.924070e-01	ci left: 1.704906e-04	ci right 2.072099e-04	k: 414	n:2200000
UBAP2L   2200000 perm   2062 sec   (1067 perm/sec)   p_kst 1.881818e-04   p_cons 6.664218e-01   p_joint 3.350000e-04

Joint ci ratio: 1.442731e-01	ci left: 3.098429e-04	ci right 3.584505e-04	k: 737	n:2210000
Cons ci ratio: 1.865522e-03	ci left: 6.658137e-01	ci right 6.670574e-01	k: 1472823	n:2210000
KS ci ratio: 1.924071e-01	ci left: 1.697191e-04	ci right 2.062723e-04	k: 414	n:2210000
UBAP2L   2210000 perm   2079 sec   (1063 perm/sec)   p_kst 1.873303e-04   p_cons 6.664357e-01   p_joint 3.334842e-04

Joint ci ratio: 1.571556e-01	ci left: 2.581612e-04	ci right 3.026188e-04	k: 621	n:2220000
Cons ci ratio: 1.861303e-03	ci left: 6.658181e-01	ci right 6.670590e-01	k: 1479494	n:2220000
KS ci ratio: 1.919452e-01	ci left: 1.698122e-04	ci right 2.062873e-04	k: 416	n:2220000
UBAP2L   2220000 perm   2095 sec   (1059 perm/sec)   p_kst 1.873874e-04   p_cons 6.664387e-01   p_joint 2.797297e-04

Joint ci ratio: 1.570295e-01	ci left: 2.574344e-04	ci right 3.017279e-04	k: 622	n:2230000
Cons ci ratio: 1.857141e-03	ci left: 6.658157e-01	ci right 6.670538e-01	k: 1486150	n:2230000
KS ci ratio: 1.919452e-01	ci left: 1.690507e-04	ci right 2.053623e-04	k: 416	n:2230000
UBAP2L   2230000 perm   2112 sec   (1056 perm/sec)   p_kst 1.865471e-04   p_cons 6.664350e-01   p_joint 2.789238e-04

Joint ci ratio: 1.564031e-01	ci left: 2.584297e-04	ci right 3.027005e-04	k: 627	n:2240000
Cons ci ratio: 1.852947e-03	ci left: 6.658277e-01	ci right 6.670630e-01	k: 1492838	n:2240000
KS ci ratio: 1.908046e-01	ci left: 1.704212e-04	ci right 2.067844e-04	k: 421	n:2240000
UBAP2L   2240000 perm   2129 sec   (1052 perm/sec)   p_kst 1.879464e-04   p_cons 6.664455e-01   p_joint 2.799107e-04

Joint ci ratio: 1.559073e-01	ci left: 2.589895e-04	ci right 3.032023e-04	k: 631	n:2250000
Cons ci ratio: 1.848925e-03	ci left: 6.658048e-01	ci right 6.670374e-01	k: 1499448	n:2250000
KS ci ratio: 1.903540e-01	ci left: 1.705103e-04	ci right 2.067966e-04	k: 423	n:2250000
UBAP2L   2250000 perm   2146 sec   (1049 perm/sec)   p_kst 1.880000e-04   p_cons 6.664213e-01   p_joint 2.804444e-04

Joint ci ratio: 1.554162e-01	ci left: 2.595445e-04	ci right 3.036995e-04	k: 635	n:2260000
Cons ci ratio: 1.844829e-03	ci left: 6.658065e-01	ci right 6.670364e-01	k: 1506113	n:2260000
KS ci ratio: 1.899067e-01	ci left: 1.705986e-04	ci right 2.068086e-04	k: 425	n:2260000
UBAP2L   2260000 perm   2163 sec   (1045 perm/sec)   p_kst 1.880531e-04   p_cons 6.664217e-01   p_joint 2.809735e-04

Joint ci ratio: 1.548088e-01	ci left: 2.605183e-04	ci right 3.046497e-04	k: 640	n:2270000
Cons ci ratio: 1.840679e-03	ci left: 6.658276e-01	ci right 6.670548e-01	k: 1512822	n:2270000
KS ci ratio: 1.888018e-01	ci left: 1.719453e-04	ci right 2.082045e-04	k: 430	n:2270000
UBAP2L   2270000 perm   2180 sec   (1041 perm/sec)   p_kst 1.894273e-04   p_cons 6.664414e-01   p_joint 2.819383e-04

Joint ci ratio: 1.370350e-01	ci left: 3.341842e-04	ci right 3.837659e-04	k: 817	n:2280000
Cons ci ratio: 1.836691e-03	ci left: 6.658161e-01	ci right 6.670405e-01	k: 1519457	n:2280000
KS ci ratio: 1.875010e-01	ci left: 1.736988e-04	ci right 2.100467e-04	k: 436	n:2280000
UBAP2L   2280000 perm   2197 sec   (1038 perm/sec)   p_kst 1.912281e-04   p_cons 6.664285e-01   p_joint 3.583333e-04

Joint ci ratio: 1.368678e-01	ci left: 3.335683e-04	ci right 3.829934e-04	k: 819	n:2290000
Cons ci ratio: 1.832654e-03	ci left: 6.658230e-01	ci right 6.670447e-01	k: 1526134	n:2290000
KS ci ratio: 1.872869e-01	ci left: 1.733565e-04	ci right 2.095866e-04	k: 437	n:2290000
UBAP2L   2290000 perm   2215 sec   (1034 perm/sec)   p_kst 1.908297e-04   p_cons 6.664341e-01   p_joint 3.576419e-04

Joint ci ratio: 1.364524e-01	ci left: 3.342176e-04	ci right 3.835763e-04	k: 824	n:2300000
Cons ci ratio: 1.828723e-03	ci left: 6.658102e-01	ci right 6.670293e-01	k: 1532766	n:2300000
KS ci ratio: 1.870735e-01	ci left: 1.730172e-04	ci right 2.091305e-04	k: 438	n:2300000
UBAP2L   2300000 perm   2232 sec   (1030 perm/sec)   p_kst 1.904348e-04   p_cons 6.664200e-01   p_joint 3.582609e-04

Joint ci ratio: 1.360407e-01	ci left: 3.348615e-04	ci right 3.841541e-04	k: 829	n:2310000
Cons ci ratio: 1.824820e-03	ci left: 6.657972e-01	ci right 6.670137e-01	k: 1539397	n:2310000
KS ci ratio: 1.862269e-01	ci left: 1.739189e-04	ci right 2.100376e-04	k: 442	n:2310000
UBAP2L   2310000 perm   2250 sec   (1027 perm/sec)   p_kst 1.913420e-04   p_cons 6.664056e-01   p_joint 3.588745e-04

Joint ci ratio: 1.376257e-01	ci left: 3.255088e-04	ci right 3.740285e-04	k: 810	n:2320000
Cons ci ratio: 1.820946e-03	ci left: 6.657829e-01	ci right 6.669968e-01	k: 1546025	n:2320000
KS ci ratio: 1.855995e-01	ci left: 1.744022e-04	ci right 2.104854e-04	k: 445	n:2320000
UBAP2L   2320000 perm   2268 sec   (1023 perm/sec)   p_kst 1.918103e-04   p_cons 6.663901e-01   p_joint 3.491379e-04

Joint ci ratio: 1.383962e-01	ci left: 3.203824e-04	ci right 3.684274e-04	k: 801	n:2330000
Cons ci ratio: 1.816952e-03	ci left: 6.658045e-01	ci right 6.670157e-01	k: 1552736	n:2330000
KS ci ratio: 1.851847e-01	ci left: 1.744722e-04	ci right 2.104802e-04	k: 447	n:2330000
UBAP2L   2330000 perm   2285 sec   (1019 perm/sec)   p_kst 1.918455e-04   p_cons 6.664103e-01   p_joint 3.437768e-04

Joint ci ratio: 1.380523e-01	ci left: 3.206635e-04	ci right 3.686214e-04	k: 805	n:2340000
Cons ci ratio: 1.812966e-03	ci left: 6.658301e-01	ci right 6.670387e-01	k: 1559457	n:2340000
KS ci ratio: 1.845678e-01	ci left: 1.749493e-04	ci right 2.109221e-04	k: 450	n:2340000
UBAP2L   2340000 perm   2303 sec   (1016 perm/sec)   p_kst 1.923077e-04   p_cons 6.664346e-01   p_joint 3.440171e-04

Joint ci ratio: 1.378814e-01	ci left: 3.201207e-04	ci right 3.679332e-04	k: 807	n:2350000
Cons ci ratio: 1.809116e-03	ci left: 6.658287e-01	ci right 6.670347e-01	k: 1566115	n:2350000
KS ci ratio: 1.845678e-01	ci left: 1.742049e-04	ci right 2.100245e-04	k: 450	n:2350000
UBAP2L   2350000 perm   2321 sec   (1013 perm/sec)   p_kst 1.914894e-04   p_cons 6.664319e-01   p_joint 3.434043e-04

Joint ci ratio: 1.377111e-01	ci left: 3.195825e-04	ci right 3.672508e-04	k: 809	n:2360000
Cons ci ratio: 1.805379e-03	ci left: 6.658052e-01	ci right 6.670088e-01	k: 1572721	n:2360000
KS ci ratio: 1.845679e-01	ci left: 1.734667e-04	ci right 2.091346e-04	k: 450	n:2360000
UBAP2L   2360000 perm   2339 sec   (1009 perm/sec)   p_kst 1.906780e-04   p_cons 6.664072e-01   p_joint 3.427966e-04

Joint ci ratio: 1.373723e-01	ci left: 3.198637e-04	ci right 3.674471e-04	k: 813	n:2370000
Cons ci ratio: 1.801471e-03	ci left: 6.658301e-01	ci right 6.670311e-01	k: 1579441	n:2370000
KS ci ratio: 1.839571e-01	ci left: 1.739422e-04	ci right 2.095763e-04	k: 453	n:2370000
UBAP2L   2370000 perm   2357 sec   (1006 perm/sec)   p_kst 1.911392e-04   p_cons 6.664308e-01   p_joint 3.430380e-04

Joint ci ratio: 1.369523e-01	ci left: 3.205485e-04	ci right 3.680760e-04	k: 818	n:2380000
Cons ci ratio: 1.797754e-03	ci left: 6.658136e-01	ci right 6.670120e-01	k: 1586063	n:2380000
KS ci ratio: 1.831519e-01	ci left: 1.748148e-04	ci right 2.104535e-04	k: 457	n:2380000
UBAP2L   2380000 perm   2375 sec   (1002 perm/sec)   p_kst 1.920168e-04   p_cons 6.664130e-01   p_joint 3.436975e-04

Joint ci ratio: 1.365361e-01	ci left: 3.212278e-04	ci right 3.686995e-04	k: 823	n:2390000
Cons ci ratio: 1.793920e-03	ci left: 6.658320e-01	ci right 6.670279e-01	k: 1592768	n:2390000
KS ci ratio: 1.823572e-01	ci left: 1.756805e-04	ci right 2.113231e-04	k: 461	n:2390000
UBAP2L   2390000 perm   2393 sec   (999 perm/sec)   p_kst 1.928870e-04   p_cons 6.664301e-01   p_joint 3.443515e-04

Joint ci ratio: 1.362882e-01	ci left: 3.210967e-04	ci right 3.684559e-04	k: 826	n:2400000
Cons ci ratio: 1.790272e-03	ci left: 6.658102e-01	ci right 6.670036e-01	k: 1599377	n:2400000
KS ci ratio: 1.817680e-01	ci left: 1.761415e-04	ci right 2.117495e-04	k: 464	n:2400000
UBAP2L   2400000 perm   2411 sec   (995 perm/sec)   p_kst 1.933333e-04   p_cons 6.664071e-01   p_joint 3.441667e-04

Joint ci ratio: 1.360417e-01	ci left: 3.209667e-04	ci right 3.682143e-04	k: 829	n:2410000
Cons ci ratio: 1.786662e-03	ci left: 6.657844e-01	ci right 6.669754e-01	k: 1605976	n:2410000
KS ci ratio: 1.815729e-01	ci left: 1.758067e-04	ci right 2.113046e-04	k: 465	n:2410000
UBAP2L   2410000 perm   2429 sec   (992 perm/sec)   p_kst 1.929461e-04   p_cons 6.663801e-01   p_joint 3.439834e-04

Joint ci ratio: 1.478241e-01	ci left: 2.690209e-04	ci right 3.123549e-04	k: 702	n:2420000
Cons ci ratio: 1.782867e-03	ci left: 6.658105e-01	ci right 6.669990e-01	k: 1612700	n:2420000
KS ci ratio: 1.813784e-01	ci left: 1.754747e-04	ci right 2.108635e-04	k: 466	n:2420000
UBAP2L   2420000 perm   2447 sec   (989 perm/sec)   p_kst 1.925620e-04   p_cons 6.664050e-01   p_joint 2.900826e-04

Joint ci ratio: 1.470935e-01	ci left: 2.706882e-04	ci right 3.140564e-04	k: 709	n:2430000
Cons ci ratio: 1.779208e-03	ci left: 6.658084e-01	ci right 6.669945e-01	k: 1619356	n:2430000
KS ci ratio: 1.804151e-01	ci left: 1.767170e-04	ci right 2.121464e-04	k: 471	n:2430000
UBAP2L   2430000 perm   2466 sec   (986 perm/sec)   p_kst 1.938272e-04   p_cons 6.664016e-01   p_joint 2.917695e-04

Joint ci ratio: 1.230770e-01	ci left: 3.899931e-04	ci right 4.415325e-04	k: 1013	n:2440000
Cons ci ratio: 1.775514e-03	ci left: 6.658207e-01	ci right 6.670043e-01	k: 1626047	n:2440000
KS ci ratio: 1.794669e-01	ci left: 1.779497e-04	ci right 2.134183e-04	k: 476	n:2440000
UBAP2L   2440000 perm   2484 sec   (982 perm/sec)   p_kst 1.950820e-04   p_cons 6.664127e-01   p_joint 4.151639e-04

Joint ci ratio: 1.229558e-01	ci left: 3.891925e-04	ci right 4.405718e-04	k: 1015	n:2450000
Cons ci ratio: 1.772014e-03	ci left: 6.657900e-01	ci right 6.669712e-01	k: 1632633	n:2450000
KS ci ratio: 1.790918e-01	ci left: 1.780030e-04	ci right 2.134001e-04	k: 478	n:2450000
UBAP2L   2450000 perm   2502 sec   (979 perm/sec)   p_kst 1.951020e-04   p_cons 6.663808e-01   p_joint 4.142857e-04

Joint ci ratio: 1.227145e-01	ci left: 3.891865e-04	ci right 4.404568e-04	k: 1019	n:2460000
Cons ci ratio: 1.768407e-03	ci left: 6.657917e-01	ci right 6.669705e-01	k: 1639298	n:2460000
KS ci ratio: 1.789052e-01	ci left: 1.776677e-04	ci right 2.129573e-04	k: 479	n:2460000
UBAP2L   2460000 perm   2521 sec   (976 perm/sec)   p_kst 1.947154e-04   p_cons 6.663813e-01   p_joint 4.142276e-04

Joint ci ratio: 1.225944e-01	ci left: 3.883957e-04	ci right 4.395081e-04	k: 1021	n:2470000
Cons ci ratio: 1.764704e-03	ci left: 6.658229e-01	ci right 6.669993e-01	k: 1646036	n:2470000
KS ci ratio: 1.787192e-01	ci left: 1.773352e-04	ci right 2.125181e-04	k: 480	n:2470000
UBAP2L   2470000 perm   2540 sec   (973 perm/sec)   p_kst 1.943320e-04   p_cons 6.664113e-01   p_joint 4.133603e-04

Joint ci ratio: 1.222956e-01	ci left: 3.887840e-04	ci right 4.398138e-04	k: 1026	n:2480000
Cons ci ratio: 1.761031e-03	ci left: 6.658523e-01	ci right 6.670263e-01	k: 1652770	n:2480000
KS ci ratio: 1.781644e-01	ci left: 1.777757e-04	ci right 2.129248e-04	k: 483	n:2480000
UBAP2L   2480000 perm   2558 sec   (969 perm/sec)   p_kst 1.947581e-04   p_cons 6.664395e-01   p_joint 4.137097e-04

Joint ci ratio: 1.219990e-01	ci left: 3.891693e-04	ci right 4.401168e-04	k: 1031	n:2490000
Cons ci ratio: 1.757338e-03	ci left: 6.658923e-01	ci right 6.670639e-01	k: 1659531	n:2490000
KS ci ratio: 1.777974e-01	ci left: 1.778292e-04	ci right 2.129087e-04	k: 485	n:2490000
UBAP2L   2490000 perm   2577 sec   (966 perm/sec)   p_kst 1.947791e-04   p_cons 6.664783e-01   p_joint 4.140562e-04

Joint ci ratio: 1.217045e-01	ci left: 3.895516e-04	ci right 4.404173e-04	k: 1036	n:2500000
Cons ci ratio: 1.753957e-03	ci left: 6.658588e-01	ci right 6.670281e-01	k: 1666109	n:2500000
KS ci ratio: 1.768897e-01	ci left: 1.790291e-04	ci right 2.141457e-04	k: 490	n:2500000
UBAP2L   2500000 perm   2596 sec   (963 perm/sec)   p_kst 1.960000e-04   p_cons 6.664436e-01   p_joint 4.144000e-04

Joint ci ratio: 1.215288e-01	ci left: 3.891585e-04	ci right 4.398942e-04	k: 1039	n:2510000
Cons ci ratio: 1.750382e-03	ci left: 6.658797e-01	ci right 6.670466e-01	k: 1672823	n:2510000
KS ci ratio: 1.765305e-01	ci left: 1.790774e-04	ci right 2.141246e-04	k: 492	n:2510000
UBAP2L   2510000 perm   2615 sec   (960 perm/sec)   p_kst 1.960159e-04   p_cons 6.664633e-01   p_joint 4.139442e-04

Joint ci ratio: 1.213540e-01	ci left: 3.887685e-04	ci right 4.393752e-04	k: 1042	n:2520000
Cons ci ratio: 1.746936e-03	ci left: 6.658730e-01	ci right 6.670377e-01	k: 1679468	n:2520000
KS ci ratio: 1.765306e-01	ci left: 1.783668e-04	ci right 2.132749e-04	k: 492	n:2520000
UBAP2L   2520000 perm   2634 sec   (957 perm/sec)   p_kst 1.952381e-04   p_cons 6.664556e-01   p_joint 4.134921e-04

Joint ci ratio: 1.239988e-01	ci left: 3.703740e-04	ci right 4.197141e-04	k: 998	n:2530000
Cons ci ratio: 1.743411e-03	ci left: 6.658918e-01	ci right 6.670541e-01	k: 1686177	n:2530000
KS ci ratio: 1.763519e-01	ci left: 1.780396e-04	ci right 2.128446e-04	k: 493	n:2530000
UBAP2L   2530000 perm   2652 sec   (954 perm/sec)   p_kst 1.948617e-04   p_cons 6.664731e-01   p_joint 3.944664e-04

Joint ci ratio: 1.246875e-01	ci left: 3.647197e-04	ci right 4.135964e-04	k: 987	n:2540000
Cons ci ratio: 1.739931e-03	ci left: 6.659045e-01	ci right 6.670645e-01	k: 1692871	n:2540000
KS ci ratio: 1.759960e-01	ci left: 1.780913e-04	ci right 2.128287e-04	k: 495	n:2540000
UBAP2L   2540000 perm   2672 sec   (951 perm/sec)   p_kst 1.948819e-04   p_cons 6.664846e-01   p_joint 3.885827e-04

Joint ci ratio: 1.245616e-01	ci left: 3.640493e-04	ci right 4.127833e-04	k: 989	n:2550000
Cons ci ratio: 1.736577e-03	ci left: 6.658900e-01	ci right 6.670477e-01	k: 1699496	n:2550000
KS ci ratio: 1.758189e-01	ci left: 1.777678e-04	ci right 2.124035e-04	k: 496	n:2550000
UBAP2L   2550000 perm   2691 sec   (948 perm/sec)   p_kst 1.945098e-04   p_cons 6.664690e-01   p_joint 3.878431e-04

Joint ci ratio: 1.239370e-01	ci left: 3.664121e-04	ci right 4.151984e-04	k: 999	n:2560000
Cons ci ratio: 1.733173e-03	ci left: 6.658932e-01	ci right 6.670486e-01	k: 1706166	n:2560000
KS ci ratio: 1.751155e-01	ci left: 1.785673e-04	ci right 2.132048e-04	k: 500	n:2560000
UBAP2L   2560000 perm   2710 sec   (945 perm/sec)   p_kst 1.953125e-04   p_cons 6.664711e-01   p_joint 3.902344e-04

Joint ci ratio: 1.236283e-01	ci left: 3.668717e-04	ci right 4.155886e-04	k: 1004	n:2570000
Cons ci ratio: 1.729746e-03	ci left: 6.659076e-01	ci right 6.670609e-01	k: 1712865	n:2570000
KS ci ratio: 1.745935e-01	ci left: 1.789887e-04	ci right 2.135936e-04	k: 503	n:2570000
UBAP2L   2570000 perm   2729 sec   (942 perm/sec)   p_kst 1.957198e-04   p_cons 6.664844e-01   p_joint 3.906615e-04

Joint ci ratio: 1.232609e-01	ci left: 3.677035e-04	ci right 4.163751e-04	k: 1010	n:2580000
Cons ci ratio: 1.726394e-03	ci left: 6.659080e-01	ci right 6.670590e-01	k: 1719528	n:2580000
KS ci ratio: 1.740762e-01	ci left: 1.794070e-04	ci right 2.139792e-04	k: 506	n:2580000
UBAP2L   2580000 perm   2748 sec   (939 perm/sec)   p_kst 1.961240e-04   p_cons 6.664837e-01   p_joint 3.914729e-04

Joint ci ratio: 1.229572e-01	ci left: 3.681548e-04	ci right 4.167574e-04	k: 1015	n:2590000
Cons ci ratio: 1.723083e-03	ci left: 6.659027e-01	ci right 6.670514e-01	k: 1726176	n:2590000
KS ci ratio: 1.733934e-01	ci left: 1.801916e-04	ci right 2.147645e-04	k: 510	n:2590000
UBAP2L   2590000 perm   2767 sec   (936 perm/sec)   p_kst 1.969112e-04   p_cons 6.664772e-01   p_joint 3.918919e-04

Joint ci ratio: 1.266261e-01	ci left: 3.451271e-04	ci right 3.921512e-04	k: 957	n:2600000
Cons ci ratio: 1.719776e-03	ci left: 6.659012e-01	ci right 6.670477e-01	k: 1732834	n:2600000
KS ci ratio: 1.730551e-01	ci left: 1.802344e-04	ci right 2.147410e-04	k: 512	n:2600000
UBAP2L   2600000 perm   2786 sec   (933 perm/sec)   p_kst 1.969231e-04   p_cons 6.664746e-01   p_joint 3.680769e-04

Joint ci ratio: 1.262314e-01	ci left: 3.460309e-04	ci right 3.930202e-04	k: 963	n:2610000
Cons ci ratio: 1.716364e-03	ci left: 6.659319e-01	ci right 6.670762e-01	k: 1739576	n:2610000
KS ci ratio: 1.725513e-01	ci left: 1.806436e-04	ci right 2.151173e-04	k: 515	n:2610000
UBAP2L   2610000 perm   2806 sec   (930 perm/sec)   p_kst 1.973180e-04   p_cons 6.665042e-01   p_joint 3.689655e-04

Joint ci ratio: 1.259052e-01	ci left: 3.465584e-04	ci right 3.934887e-04	k: 968	n:2620000
Cons ci ratio: 1.712996e-03	ci left: 6.659562e-01	ci right 6.670984e-01	k: 1746302	n:2620000
KS ci ratio: 1.723844e-01	ci left: 1.803193e-04	ci right 2.146944e-04	k: 516	n:2620000
UBAP2L   2620000 perm   2826 sec   (927 perm/sec)   p_kst 1.969466e-04   p_cons 6.665275e-01   p_joint 3.694656e-04

Joint ci ratio: 1.266264e-01	ci left: 3.411902e-04	ci right 3.876781e-04	k: 957	n:2630000
Cons ci ratio: 1.709728e-03	ci left: 6.659595e-01	ci right 6.670994e-01	k: 1752973	n:2630000
KS ci ratio: 1.717213e-01	ci left: 1.810891e-04	ci right 2.154644e-04	k: 520	n:2630000
UBAP2L   2630000 perm   2845 sec   (924 perm/sec)   p_kst 1.977186e-04   p_cons 6.665297e-01   p_joint 3.638783e-04

Joint ci ratio: 1.262972e-01	ci left: 3.417319e-04	ci right 3.881634e-04	k: 962	n:2640000
Cons ci ratio: 1.706483e-03	ci left: 6.659616e-01	ci right 6.670994e-01	k: 1759641	n:2640000
KS ci ratio: 1.713926e-01	ci left: 1.811282e-04	ci right 2.154384e-04	k: 522	n:2640000
UBAP2L   2640000 perm   2865 sec   (921 perm/sec)   p_kst 1.977273e-04   p_cons 6.665307e-01   p_joint 3.643939e-04

Joint ci ratio: 1.262317e-01	ci left: 3.408078e-04	ci right 3.870879e-04	k: 963	n:2650000
Cons ci ratio: 1.703350e-03	ci left: 6.659392e-01	ci right 6.670748e-01	k: 1766244	n:2650000
KS ci ratio: 1.712290e-01	ci left: 1.808059e-04	ci right 2.150189e-04	k: 523	n:2650000
UBAP2L   2650000 perm   2885 sec   (919 perm/sec)   p_kst 1.973585e-04   p_cons 6.665072e-01   p_joint 3.633962e-04

Joint ci ratio: 1.261010e-01	ci left: 3.402547e-04	ci right 3.864083e-04	k: 965	n:2660000
Cons ci ratio: 1.700136e-03	ci left: 6.659425e-01	ci right 6.670760e-01	k: 1772915	n:2660000
KS ci ratio: 1.710659e-01	ci left: 1.804860e-04	ci right 2.146026e-04	k: 524	n:2660000
UBAP2L   2660000 perm   2905 sec   (916 perm/sec)   p_kst 1.969925e-04   p_cons 6.665094e-01   p_joint 3.627820e-04

Joint ci ratio: 1.258407e-01	ci left: 3.404312e-04	ci right 3.865064e-04	k: 969	n:2670000
Cons ci ratio: 1.697007e-03	ci left: 6.659285e-01	ci right 6.670599e-01	k: 1779540	n:2670000
KS ci ratio: 1.710660e-01	ci left: 1.798100e-04	ci right 2.137988e-04	k: 524	n:2670000
UBAP2L   2670000 perm   2925 sec   (913 perm/sec)   p_kst 1.962547e-04   p_cons 6.664944e-01   p_joint 3.629213e-04

Joint ci ratio: 1.257760e-01	ci left: 3.395224e-04	ci right 3.854491e-04	k: 970	n:2680000
Cons ci ratio: 1.693777e-03	ci left: 6.659456e-01	ci right 6.670749e-01	k: 1786248	n:2680000
KS ci ratio: 1.709033e-01	ci left: 1.794963e-04	ci right 2.133902e-04	k: 525	n:2680000
UBAP2L   2680000 perm   2945 sec   (910 perm/sec)   p_kst 1.958955e-04   p_cons 6.665104e-01   p_joint 3.619403e-04

Joint ci ratio: 1.256467e-01	ci left: 3.389803e-04	ci right 3.847831e-04	k: 972	n:2690000
Cons ci ratio: 1.690616e-03	ci left: 6.659492e-01	ci right 6.670764e-01	k: 1792920	n:2690000
KS ci ratio: 1.707411e-01	ci left: 1.791848e-04	ci right 2.129845e-04	k: 526	n:2690000
UBAP2L   2690000 perm   2965 sec   (907 perm/sec)   p_kst 1.955390e-04   p_cons 6.665130e-01   p_joint 3.613383e-04

Joint ci ratio: 1.255822e-01	ci left: 3.380835e-04	ci right 3.837400e-04	k: 973	n:2700000
Cons ci ratio: 1.687550e-03	ci left: 6.659325e-01	ci right 6.670576e-01	k: 1799537	n:2700000
KS ci ratio: 1.707412e-01	ci left: 1.785212e-04	ci right 2.121957e-04	k: 526	n:2700000
UBAP2L   2700000 perm   2986 sec   (904 perm/sec)   p_kst 1.948148e-04   p_cons 6.664952e-01   p_joint 3.603704e-04

Joint ci ratio: 1.253251e-01	ci left: 3.382657e-04	ci right 3.838463e-04	k: 977	n:2710000
Cons ci ratio: 1.684355e-03	ci left: 6.659542e-01	ci right 6.670772e-01	k: 1806258	n:2710000
KS ci ratio: 1.704181e-01	ci left: 1.785689e-04	ci right 2.121822e-04	k: 528	n:2710000
UBAP2L   2710000 perm   3006 sec   (901 perm/sec)   p_kst 1.948339e-04   p_cons 6.665159e-01   p_joint 3.605166e-04

Joint ci ratio: 1.197024e-01	ci left: 3.705227e-04	ci right 4.180515e-04	k: 1071	n:2720000
Cons ci ratio: 1.681319e-03	ci left: 6.659386e-01	ci right 6.670596e-01	k: 1812878	n:2720000
KS ci ratio: 1.700969e-01	ci left: 1.786164e-04	ci right 2.121687e-04	k: 530	n:2720000
UBAP2L   2720000 perm   3027 sec   (899 perm/sec)   p_kst 1.948529e-04   p_cons 6.664993e-01   p_joint 3.937500e-04

Joint ci ratio: 1.193688e-01	ci left: 3.712976e-04	ci right 4.187836e-04	k: 1077	n:2730000
Cons ci ratio: 1.678166e-03	ci left: 6.659583e-01	ci right 6.670772e-01	k: 1819594	n:2730000
KS ci ratio: 1.694597e-01	ci left: 1.793651e-04	ci right 2.129189e-04	k: 534	n:2730000
UBAP2L   2730000 perm   3047 sec   (896 perm/sec)   p_kst 1.956044e-04   p_cons 6.665179e-01   p_joint 3.945055e-04

Joint ci ratio: 1.193135e-01	ci left: 3.702966e-04	ci right 4.176311e-04	k: 1078	n:2740000
Cons ci ratio: 1.675092e-03	ci left: 6.659618e-01	ci right 6.670787e-01	k: 1826266	n:2740000
KS ci ratio: 1.694598e-01	ci left: 1.787104e-04	ci right 2.121419e-04	k: 534	n:2740000
UBAP2L   2740000 perm   3067 sec   (893 perm/sec)   p_kst 1.948905e-04   p_cons 6.665204e-01   p_joint 3.934307e-04

Joint ci ratio: 1.190380e-01	ci left: 3.707140e-04	ci right 4.179848e-04	k: 1083	n:2750000
Cons ci ratio: 1.672060e-03	ci left: 6.659584e-01	ci right 6.670732e-01	k: 1832919	n:2750000
KS ci ratio: 1.689866e-01	ci left: 1.791053e-04	ci right 2.125075e-04	k: 537	n:2750000
UBAP2L   2750000 perm   3087 sec   (891 perm/sec)   p_kst 1.952727e-04   p_cons 6.665160e-01   p_joint 3.938182e-04

Joint ci ratio: 1.187099e-01	ci left: 3.714801e-04	ci right 4.187089e-04	k: 1089	n:2760000
Cons ci ratio: 1.668963e-03	ci left: 6.659768e-01	ci right 6.670895e-01	k: 1839632	n:2760000
KS ci ratio: 1.685174e-01	ci left: 1.794974e-04	ci right 2.128704e-04	k: 540	n:2760000
UBAP2L   2760000 perm   3108 sec   (888 perm/sec)   p_kst 1.956522e-04   p_cons 6.665333e-01   p_joint 3.945652e-04

Joint ci ratio: 1.186012e-01	ci left: 3.708396e-04	ci right 4.179407e-04	k: 1091	n:2770000
Cons ci ratio: 1.665970e-03	ci left: 6.659719e-01	ci right 6.670826e-01	k: 1846281	n:2770000
KS ci ratio: 1.683619e-01	ci left: 1.791952e-04	ci right 2.124781e-04	k: 541	n:2770000
UBAP2L   2770000 perm   3128 sec   (885 perm/sec)   p_kst 1.953069e-04   p_cons 6.665274e-01   p_joint 3.938628e-04

Joint ci ratio: 1.183846e-01	ci left: 3.709019e-04	ci right 4.179188e-04	k: 1095	n:2780000
Cons ci ratio: 1.662964e-03	ci left: 6.659746e-01	ci right 6.670833e-01	k: 1852951	n:2780000
KS ci ratio: 1.678979e-01	ci left: 1.795844e-04	ci right 2.128383e-04	k: 544	n:2780000
UBAP2L   2780000 perm   3149 sec   (883 perm/sec)   p_kst 1.956835e-04   p_cons 6.665291e-01   p_joint 3.938849e-04

Joint ci ratio: 1.181691e-01	ci left: 3.709638e-04	ci right 4.178970e-04	k: 1099	n:2790000
Cons ci ratio: 1.659963e-03	ci left: 6.659805e-01	ci right 6.670873e-01	k: 1859630	n:2790000
KS ci ratio: 1.675906e-01	ci left: 1.796274e-04	ci right 2.128223e-04	k: 546	n:2790000
UBAP2L   2790000 perm   3169 sec   (880 perm/sec)   p_kst 1.956989e-04   p_cons 6.665341e-01   p_joint 3.939068e-04

Joint ci ratio: 1.178481e-01	ci left: 3.717185e-04	ci right 4.186106e-04	k: 1105	n:2800000
Cons ci ratio: 1.656927e-03	ci left: 6.659999e-01	ci right 6.671047e-01	k: 1866347	n:2800000
KS ci ratio: 1.668298e-01	ci left: 1.806969e-04	ci right 2.139226e-04	k: 551	n:2800000
UBAP2L   2800000 perm   3190 sec   (878 perm/sec)   p_kst 1.967857e-04   p_cons 6.665525e-01   p_joint 3.946429e-04

Joint ci ratio: 1.174241e-01	ci left: 3.731589e-04	ci right 4.200515e-04	k: 1113	n:2810000
Cons ci ratio: 1.654006e-03	ci left: 6.659929e-01	ci right 6.670957e-01	k: 1872990	n:2810000
KS ci ratio: 1.662286e-01	ci left: 1.814180e-04	ci right 2.146441e-04	k: 555	n:2810000
UBAP2L   2810000 perm   3211 sec   (875 perm/sec)   p_kst 1.975089e-04   p_cons 6.665445e-01   p_joint 3.960854e-04

Joint ci ratio: 1.171091e-01	ci left: 3.739009e-04	ci right 4.207520e-04	k: 1119	n:2820000
Cons ci ratio: 1.651064e-03	ci left: 6.659959e-01	ci right 6.670967e-01	k: 1879661	n:2820000
KS ci ratio: 1.657819e-01	ci left: 1.817943e-04	ci right 2.149909e-04	k: 558	n:2820000
UBAP2L   2820000 perm   3232 sec   (873 perm/sec)   p_kst 1.978723e-04   p_cons 6.665465e-01   p_joint 3.968085e-04

Joint ci ratio: 1.170569e-01	ci left: 3.729227e-04	ci right 4.196290e-04	k: 1120	n:2830000
Cons ci ratio: 1.648166e-03	ci left: 6.659910e-01	ci right 6.670899e-01	k: 1886310	n:2830000
KS ci ratio: 1.656338e-01	ci left: 1.814907e-04	ci right 2.145992e-04	k: 559	n:2830000
UBAP2L   2830000 perm   3253 sec   (870 perm/sec)   p_kst 1.975265e-04   p_cons 6.665406e-01   p_joint 3.957597e-04

Joint ci ratio: 1.170048e-01	ci left: 3.719514e-04	ci right 4.185138e-04	k: 1121	n:2840000
Cons ci ratio: 1.645270e-03	ci left: 6.659897e-01	ci right 6.670867e-01	k: 1892969	n:2840000
KS ci ratio: 1.654862e-01	ci left: 1.811891e-04	ci right 2.142103e-04	k: 560	n:2840000
UBAP2L   2840000 perm   3274 sec   (868 perm/sec)   p_kst 1.971831e-04   p_cons 6.665384e-01   p_joint 3.947183e-04

Joint ci ratio: 1.167968e-01	ci left: 3.720087e-04	ci right 4.184899e-04	k: 1125	n:2850000
Cons ci ratio: 1.642248e-03	ci left: 6.660267e-01	ci right 6.671217e-01	k: 1899737	n:2850000
KS ci ratio: 1.654862e-01	ci left: 1.805534e-04	ci right 2.134587e-04	k: 560	n:2850000
UBAP2L   2850000 perm   3295 sec   (865 perm/sec)   p_kst 1.964912e-04   p_cons 6.665744e-01   p_joint 3.947368e-04

Joint ci ratio: 1.166933e-01	ci left: 3.713869e-04	ci right 4.177464e-04	k: 1127	n:2860000
Cons ci ratio: 1.639339e-03	ci left: 6.660372e-01	ci right 6.671303e-01	k: 1906430	n:2860000
KS ci ratio: 1.651920e-01	ci left: 1.805924e-04	ci right 2.134405e-04	k: 562	n:2860000
UBAP2L   2860000 perm   3316 sec   (862 perm/sec)   p_kst 1.965035e-04   p_cons 6.665839e-01   p_joint 3.940559e-04

Joint ci ratio: 1.164355e-01	ci left: 3.717842e-04	ci right 4.180837e-04	k: 1132	n:2870000
Cons ci ratio: 1.636519e-03	ci left: 6.660278e-01	ci right 6.671189e-01	k: 1913066	n:2870000
KS ci ratio: 1.646082e-01	ci left: 1.812994e-04	ci right 2.141480e-04	k: 566	n:2870000
UBAP2L   2870000 perm   3338 sec   (860 perm/sec)   p_kst 1.972125e-04   p_cons 6.665735e-01   p_joint 3.944251e-04

Joint ci ratio: 1.162816e-01	ci left: 3.715046e-04	ci right 4.177040e-04	k: 1135	n:2880000
Cons ci ratio: 1.633736e-03	ci left: 6.660121e-01	ci right 6.671014e-01	k: 1919684	n:2880000
KS ci ratio: 1.644633e-01	ci left: 1.810028e-04	ci right 2.137660e-04	k: 567	n:2880000
UBAP2L   2880000 perm   3359 sec   (857 perm/sec)   p_kst 1.968750e-04   p_cons 6.665569e-01   p_joint 3.940972e-04

Joint ci ratio: 1.158743e-01	ci left: 3.729070e-04	ci right 4.191072e-04	k: 1143	n:2890000
Cons ci ratio: 1.630935e-03	ci left: 6.660056e-01	ci right 6.670930e-01	k: 1926328	n:2890000
KS ci ratio: 1.637441e-01	ci left: 1.820356e-04	ci right 2.148274e-04	k: 572	n:2890000
UBAP2L   2890000 perm   3380 sec   (855 perm/sec)   p_kst 1.979239e-04   p_cons 6.665495e-01   p_joint 3.955017e-04

Joint ci ratio: 1.298550e-01	ci left: 2.937367e-04	ci right 3.348580e-04	k: 910	n:2900000
Cons ci ratio: 1.681342e-03	ci left: 6.515525e-01	ci right 6.526492e-01	k: 1891093	n:2900000
KS ci ratio: 1.634591e-01	ci left: 1.820693e-04	ci right 2.148044e-04	k: 574	n:2900000
UBAP2L   2900000 perm   3402 sec   (852 perm/sec)   p_kst 1.979310e-04   p_cons 6.521010e-01   p_joint 3.137931e-04

Joint ci ratio: 1.295708e-01	ci left: 2.940573e-04	ci right 3.351265e-04	k: 914	n:2910000
Cons ci ratio: 1.678335e-03	ci left: 6.515847e-01	ci right 6.526796e-01	k: 1897705	n:2910000
KS ci ratio: 1.634591e-01	ci left: 1.814436e-04	ci right 2.140663e-04	k: 574	n:2910000
UBAP2L   2910000 perm   3423 sec   (850 perm/sec)   p_kst 1.972509e-04   p_cons 6.521323e-01   p_joint 3.140893e-04

Joint ci ratio: 1.292885e-01	ci left: 2.943758e-04	ci right 3.353930e-04	k: 918	n:2920000
Cons ci ratio: 1.675474e-03	ci left: 6.515815e-01	ci right 6.526744e-01	k: 1904214	n:2920000
KS ci ratio: 1.631756e-01	ci left: 1.814792e-04	ci right 2.140461e-04	k: 576	n:2920000
UBAP2L   2920000 perm   3445 sec   (848 perm/sec)   p_kst 1.972603e-04   p_cons 6.521281e-01   p_joint 3.143836e-04

Joint ci ratio: 1.292886e-01	ci left: 2.933711e-04	ci right 3.342483e-04	k: 918	n:2930000
Cons ci ratio: 1.672580e-03	ci left: 6.515912e-01	ci right 6.526822e-01	k: 1910761	n:2930000
KS ci ratio: 1.631756e-01	ci left: 1.808598e-04	ci right 2.133156e-04	k: 576	n:2930000
UBAP2L   2930000 perm   3466 sec   (845 perm/sec)   p_kst 1.965870e-04   p_cons 6.521369e-01   p_joint 3.133106e-04

Joint ci ratio: 1.292183e-01	ci left: 2.927023e-04	ci right 3.334625e-04	k: 919	n:2940000
Cons ci ratio: 1.669701e-03	ci left: 6.516008e-01	ci right 6.526900e-01	k: 1917308	n:2940000
KS ci ratio: 1.631757e-01	ci left: 1.802446e-04	ci right 2.125900e-04	k: 576	n:2940000
UBAP2L   2940000 perm   3488 sec   (843 perm/sec)   p_kst 1.959184e-04   p_cons 6.521456e-01   p_joint 3.125850e-04

Joint ci ratio: 1.290781e-01	ci left: 2.923662e-04	ci right 3.330320e-04	k: 921	n:2950000
Cons ci ratio: 1.666876e-03	ci left: 6.515999e-01	ci right 6.526873e-01	k: 1923824	n:2950000
KS ci ratio: 1.630345e-01	ci left: 1.799587e-04	ci right 2.122222e-04	k: 577	n:2950000
UBAP2L   2950000 perm   3510 sec   (840 perm/sec)   p_kst 1.955932e-04   p_cons 6.521437e-01   p_joint 3.122034e-04

Joint ci ratio: 1.287990e-01	ci left: 2.926862e-04	ci right 3.333018e-04	k: 925	n:2960000
Cons ci ratio: 1.664166e-03	ci left: 6.515713e-01	ci right 6.526568e-01	k: 1930258	n:2960000
KS ci ratio: 1.624732e-01	ci left: 1.806471e-04	ci right 2.129115e-04	k: 581	n:2960000
UBAP2L   2960000 perm   3532 sec   (838 perm/sec)   p_kst 1.962838e-04   p_cons 6.521142e-01   p_joint 3.125000e-04

Joint ci ratio: 1.283837e-01	ci left: 2.936560e-04	ci right 3.342647e-04	k: 931	n:2970000
Cons ci ratio: 1.661243e-03	ci left: 6.516048e-01	ci right 6.526885e-01	k: 1936876	n:2970000
KS ci ratio: 1.617797e-01	ci left: 1.816541e-04	ci right 2.139464e-04	k: 586	n:2970000
UBAP2L   2970000 perm   3554 sec   (836 perm/sec)   p_kst 1.973064e-04   p_cons 6.521468e-01   p_joint 3.134680e-04

Joint ci ratio: 1.282462e-01	ci left: 2.933201e-04	ci right 3.338357e-04	k: 933	n:2980000
Cons ci ratio: 1.658451e-03	ci left: 6.516062e-01	ci right 6.526881e-01	k: 1943399	n:2980000
KS ci ratio: 1.616421e-01	ci left: 1.813665e-04	ci right 2.135776e-04	k: 587	n:2980000
UBAP2L   2980000 perm   3576 sec   (833 perm/sec)   p_kst 1.969799e-04   p_cons 6.521473e-01   p_joint 3.130872e-04

Joint ci ratio: 1.278362e-01	ci left: 2.942816e-04	ci right 3.347901e-04	k: 939	n:2990000
Cons ci ratio: 1.655659e-03	ci left: 6.516117e-01	ci right 6.526917e-01	k: 1949934	n:2990000
KS ci ratio: 1.610950e-01	ci left: 1.820437e-04	ci right 2.142551e-04	k: 591	n:2990000
UBAP2L   2990000 perm   3598 sec   (831 perm/sec)   p_kst 1.976589e-04   p_cons 6.521518e-01   p_joint 3.140468e-04

Joint ci ratio: 1.278362e-01	ci left: 2.933006e-04	ci right 3.336742e-04	k: 939	n:3000000
Cons ci ratio: 1.652847e-03	ci left: 6.516264e-01	ci right 6.527046e-01	k: 1956497	n:3000000
KS ci ratio: 1.610951e-01	ci left: 1.814369e-04	ci right 2.135409e-04	k: 591	n:3000000
UBAP2L   3000000 perm   3620 sec   (829 perm/sec)   p_kst 1.970000e-04   p_cons 6.521657e-01   p_joint 3.130000e-04

Joint ci ratio: 1.275651e-01	ci left: 2.936126e-04	ci right 3.339369e-04	k: 943	n:3010000
Cons ci ratio: 1.650136e-03	ci left: 6.516171e-01	ci right 6.526936e-01	k: 1962988	n:3010000
KS ci ratio: 1.606884e-01	ci left: 1.817906e-04	ci right 2.138682e-04	k: 594	n:3010000
UBAP2L   3010000 perm   3642 sec   (827 perm/sec)   p_kst 1.973422e-04   p_cons 6.521555e-01   p_joint 3.132890e-04

Joint ci ratio: 1.272957e-01	ci left: 2.939227e-04	ci right 3.341979e-04	k: 947	n:3020000
Cons ci ratio: 1.647452e-03	ci left: 6.516042e-01	ci right 6.526789e-01	k: 1969468	n:3020000
KS ci ratio: 1.604190e-01	ci left: 1.818243e-04	ci right 2.138489e-04	k: 596	n:3020000
UBAP2L   3020000 perm   3664 sec   (824 perm/sec)   p_kst 1.973510e-04   p_cons 6.521417e-01   p_joint 3.135762e-04

Joint ci ratio: 1.270279e-01	ci left: 2.942308e-04	ci right 3.344570e-04	k: 951	n:3030000
Cons ci ratio: 1.644834e-03	ci left: 6.515766e-01	ci right 6.526495e-01	k: 1975903	n:3030000
KS ci ratio: 1.601510e-01	ci left: 1.818578e-04	ci right 2.138296e-04	k: 598	n:3030000
UBAP2L   3030000 perm   3686 sec   (822 perm/sec)   p_kst 1.973597e-04   p_cons 6.521132e-01   p_joint 3.138614e-04

Joint ci ratio: 1.268947e-01	ci left: 2.938999e-04	ci right 3.340356e-04	k: 953	n:3040000
Cons ci ratio: 1.642193e-03	ci left: 6.515590e-01	ci right 6.526302e-01	k: 1982368	n:3040000
KS ci ratio: 1.598843e-01	ci left: 1.818912e-04	ci right 2.138105e-04	k: 600	n:3040000
UBAP2L   3040000 perm   3709 sec   (820 perm/sec)   p_kst 1.973684e-04   p_cons 6.520947e-01   p_joint 3.134868e-04

Joint ci ratio: 1.266295e-01	ci left: 2.942062e-04	ci right 3.342935e-04	k: 957	n:3050000
Cons ci ratio: 1.639498e-03	ci left: 6.515602e-01	ci right 6.526296e-01	k: 1988890	n:3050000
KS ci ratio: 1.596189e-01	ci left: 1.819243e-04	ci right 2.137914e-04	k: 602	n:3050000
UBAP2L   3050000 perm   3731 sec   (817 perm/sec)   p_kst 1.973770e-04   p_cons 6.520951e-01   p_joint 3.137705e-04

Joint ci ratio: 1.299274e-01	ci left: 2.780616e-04	ci right 3.170119e-04	k: 909	n:3060000
Cons ci ratio: 1.636752e-03	ci left: 6.515791e-01	ci right 6.526468e-01	k: 1995466	n:3060000
KS ci ratio: 1.593549e-01	ci left: 1.819573e-04	ci right 2.137724e-04	k: 604	n:3060000
UBAP2L   3060000 perm   3754 sec   (815 perm/sec)   p_kst 1.973856e-04   p_cons 6.521131e-01   p_joint 2.970588e-04

Joint ci ratio: 1.298561e-01	ci left: 2.774710e-04	ci right 3.163156e-04	k: 910	n:3070000
Cons ci ratio: 1.633975e-03	ci left: 6.516102e-01	ci right 6.526761e-01	k: 2002080	n:3070000
KS ci ratio: 1.593549e-01	ci left: 1.813646e-04	ci right 2.130760e-04	k: 604	n:3070000
UBAP2L   3070000 perm   3776 sec   (813 perm/sec)   p_kst 1.967427e-04   p_cons 6.521433e-01   p_joint 2.964169e-04

Joint ci ratio: 1.293600e-01	ci left: 2.787692e-04	ci right 3.176350e-04	k: 917	n:3080000
Cons ci ratio: 1.631353e-03	ci left: 6.516019e-01	ci right 6.526660e-01	k: 2008573	n:3080000
KS ci ratio: 1.588307e-01	ci left: 1.820228e-04	ci right 2.137346e-04	k: 608	n:3080000
UBAP2L   3080000 perm   3798 sec   (811 perm/sec)   p_kst 1.974026e-04   p_cons 6.521341e-01   p_joint 2.977273e-04

Joint ci ratio: 1.292193e-01	ci left: 2.784933e-04	ci right 3.172752e-04	k: 919	n:3090000
Cons ci ratio: 1.628554e-03	ci left: 6.516466e-01	ci right 6.527091e-01	k: 2015230	n:3090000
KS ci ratio: 1.585705e-01	ci left: 1.820552e-04	ci right 2.137158e-04	k: 610	n:3090000
UBAP2L   3090000 perm   3821 sec   (809 perm/sec)   p_kst 1.974110e-04   p_cons 6.521780e-01   p_joint 2.974110e-04

Joint ci ratio: 1.289393e-01	ci left: 2.788436e-04	ci right 3.175837e-04	k: 923	n:3100000
Cons ci ratio: 1.625873e-03	ci left: 6.516621e-01	ci right 6.527228e-01	k: 2021797	n:3100000
KS ci ratio: 1.580540e-01	ci left: 1.827072e-04	ci right 2.143678e-04	k: 614	n:3100000
UBAP2L   3100000 perm   3844 sec   (806 perm/sec)   p_kst 1.980645e-04   p_cons 6.521926e-01   p_joint 2.977419e-04

Joint ci ratio: 1.285918e-01	ci left: 2.795030e-04	ci right 3.182220e-04	k: 928	n:3110000
Cons ci ratio: 1.623303e-03	ci left: 6.516501e-01	ci right 6.527091e-01	k: 2028279	n:3110000
KS ci ratio: 1.576698e-01	ci left: 1.830462e-04	ci right 2.146812e-04	k: 617	n:3110000
UBAP2L   3110000 perm   3867 sec   (804 perm/sec)   p_kst 1.983923e-04   p_cons 6.521797e-01   p_joint 2.983923e-04

Joint ci ratio: 1.370416e-01	ci left: 2.442108e-04	ci right 2.804453e-04	k: 817	n:3120000
Cons ci ratio: 1.620607e-03	ci left: 6.516767e-01	ci right 6.527339e-01	k: 2034881	n:3120000
KS ci ratio: 1.572885e-01	ci left: 1.833832e-04	ci right 2.149925e-04	k: 620	n:3120000
UBAP2L   3120000 perm   3889 sec   (802 perm/sec)   p_kst 1.987179e-04   p_cons 6.522054e-01   p_joint 2.618590e-04

Joint ci ratio: 1.366246e-01	ci left: 2.449733e-04	ci right 2.812014e-04	k: 822	n:3130000
Cons ci ratio: 1.617946e-03	ci left: 6.516973e-01	ci right 6.527529e-01	k: 2041465	n:3130000
KS ci ratio: 1.567843e-01	ci left: 1.840250e-04	ci right 2.156338e-04	k: 624	n:3130000
UBAP2L   3130000 perm   3912 sec   (800 perm/sec)   p_kst 1.993610e-04   p_cons 6.522252e-01   p_joint 2.626198e-04

Joint ci ratio: 1.365417e-01	ci left: 2.445007e-04	ci right 2.806352e-04	k: 823	n:3140000
Cons ci ratio: 1.615380e-03	ci left: 6.516946e-01	ci right 6.527485e-01	k: 2047976	n:3140000
KS ci ratio: 1.566591e-01	ci left: 1.837449e-04	ci right 2.152780e-04	k: 625	n:3140000
UBAP2L   3140000 perm   3936 sec   (798 perm/sec)   p_kst 1.990446e-04   p_cons 6.522217e-01   p_joint 2.621019e-04

Joint ci ratio: 1.363763e-01	ci left: 2.443378e-04	ci right 2.804009e-04	k: 825	n:3150000
Cons ci ratio: 1.612871e-03	ci left: 6.516795e-01	ci right 6.527317e-01	k: 2054448	n:3150000
KS ci ratio: 1.564094e-01	ci left: 1.837717e-04	ci right 2.152544e-04	k: 627	n:3150000
UBAP2L   3150000 perm   3959 sec   (796 perm/sec)   p_kst 1.990476e-04   p_cons 6.522057e-01   p_joint 2.619048e-04

Joint ci ratio: 1.362939e-01	ci left: 2.438702e-04	ci right 2.798408e-04	k: 826	n:3160000
Cons ci ratio: 1.610285e-03	ci left: 6.516891e-01	ci right 6.527397e-01	k: 2060998	n:3160000
KS ci ratio: 1.564095e-01	ci left: 1.831901e-04	ci right 2.145732e-04	k: 627	n:3160000
UBAP2L   3160000 perm   3982 sec   (794 perm/sec)   p_kst 1.984177e-04   p_cons 6.522146e-01   p_joint 2.613924e-04

Joint ci ratio: 1.359654e-01	ci left: 2.443198e-04	ci right 2.802628e-04	k: 830	n:3170000
Cons ci ratio: 1.607774e-03	ci left: 6.516814e-01	ci right 6.527303e-01	k: 2067493	n:3170000
KS ci ratio: 1.560372e-01	ci left: 1.835216e-04	ci right 2.148796e-04	k: 630	n:3170000
UBAP2L   3170000 perm   4006 sec   (791 perm/sec)   p_kst 1.987382e-04   p_cons 6.522060e-01   p_joint 2.618297e-04

Joint ci ratio: 1.358837e-01	ci left: 2.438552e-04	ci right 2.797066e-04	k: 831	n:3180000
Cons ci ratio: 1.605282e-03	ci left: 6.516715e-01	ci right 6.527188e-01	k: 2073981	n:3180000
KS ci ratio: 1.559137e-01	ci left: 1.832467e-04	ci right 2.145306e-04	k: 631	n:3180000
UBAP2L   3180000 perm   4029 sec   (789 perm/sec)   p_kst 1.984277e-04   p_cons 6.521953e-01   p_joint 2.613208e-04

Joint ci ratio: 1.358022e-01	ci left: 2.433936e-04	ci right 2.791539e-04	k: 832	n:3190000
Cons ci ratio: 1.602649e-03	ci left: 6.517050e-01	ci right 6.527506e-01	k: 2080607	n:3190000
KS ci ratio: 1.557905e-01	ci left: 1.829735e-04	ci right 2.141838e-04	k: 632	n:3190000
UBAP2L   3190000 perm   4053 sec   (787 perm/sec)   p_kst 1.981191e-04   p_cons 6.522279e-01   p_joint 2.608150e-04

Joint ci ratio: 1.358022e-01	ci left: 2.426330e-04	ci right 2.782815e-04	k: 832	n:3200000
Cons ci ratio: 1.600144e-03	ci left: 6.517054e-01	ci right 6.527493e-01	k: 2087128	n:3200000
KS ci ratio: 1.557906e-01	ci left: 1.824017e-04	ci right 2.135145e-04	k: 632	n:3200000
UBAP2L   3200000 perm   4077 sec   (785 perm/sec)   p_kst 1.975000e-04   p_cons 6.522275e-01   p_joint 2.600000e-04

Joint ci ratio: 1.355584e-01	ci left: 2.427800e-04	ci right 2.783809e-04	k: 835	n:3210000
Cons ci ratio: 1.597583e-03	ci left: 6.517251e-01	ci right 6.527674e-01	k: 2093711	n:3210000
KS ci ratio: 1.555450e-01	ci left: 1.824323e-04	ci right 2.134967e-04	k: 634	n:3210000
UBAP2L   3210000 perm   4100 sec   (783 perm/sec)   p_kst 1.975078e-04   p_cons 6.522464e-01   p_joint 2.601246e-04

Joint ci ratio: 1.352352e-01	ci left: 2.432262e-04	ci right 2.788007e-04	k: 839	n:3220000
Cons ci ratio: 1.595129e-03	ci left: 6.517177e-01	ci right 6.527584e-01	k: 2100207	n:3220000
KS ci ratio: 1.551789e-01	ci left: 1.827612e-04	ci right 2.138015e-04	k: 637	n:3220000
UBAP2L   3220000 perm   4124 sec   (781 perm/sec)   p_kst 1.978261e-04   p_cons 6.522382e-01   p_joint 2.605590e-04

Joint ci ratio: 1.350745e-01	ci left: 2.430714e-04	ci right 2.785776e-04	k: 841	n:3230000
Cons ci ratio: 1.592568e-03	ci left: 6.517441e-01	ci right 6.527832e-01	k: 2106812	n:3230000
KS ci ratio: 1.549362e-01	ci left: 1.827905e-04	ci right 2.137828e-04	k: 639	n:3230000
UBAP2L   3230000 perm   4148 sec   (779 perm/sec)   p_kst 1.978328e-04   p_cons 6.522638e-01   p_joint 2.603715e-04

Joint ci ratio: 1.348345e-01	ci left: 2.432159e-04	ci right 2.786750e-04	k: 844	n:3240000
Cons ci ratio: 1.590097e-03	ci left: 6.517481e-01	ci right 6.527856e-01	k: 2113345	n:3240000
KS ci ratio: 1.545743e-01	ci left: 1.831164e-04	ci right 2.140847e-04	k: 642	n:3240000
UBAP2L   3240000 perm   4171 sec   (777 perm/sec)   p_kst 1.981481e-04   p_cons 6.522670e-01   p_joint 2.604938e-04

Joint ci ratio: 1.346752e-01	ci left: 2.430622e-04	ci right 2.784536e-04	k: 846	n:3250000
Cons ci ratio: 1.587701e-03	ci left: 6.517342e-01	ci right 6.527701e-01	k: 2119820	n:3250000
KS ci ratio: 1.543345e-01	ci left: 1.831446e-04	ci right 2.140651e-04	k: 644	n:3250000
UBAP2L   3250000 perm   4195 sec   (775 perm/sec)   p_kst 1.981538e-04   p_cons 6.522523e-01   p_joint 2.603077e-04

Joint ci ratio: 1.344373e-01	ci left: 2.432058e-04	ci right 2.785507e-04	k: 849	n:3260000
Cons ci ratio: 1.585245e-03	ci left: 6.517404e-01	ci right 6.527747e-01	k: 2126360	n:3260000
KS ci ratio: 1.539768e-01	ci left: 1.834675e-04	ci right 2.143642e-04	k: 647	n:3260000
UBAP2L   3260000 perm   4219 sec   (773 perm/sec)   p_kst 1.984663e-04   p_cons 6.522577e-01   p_joint 2.604294e-04

Joint ci ratio: 1.343584e-01	ci left: 2.427576e-04	ci right 2.780149e-04	k: 850	n:3270000
Cons ci ratio: 1.582748e-03	ci left: 6.517615e-01	ci right 6.527942e-01	k: 2132949	n:3270000
KS ci ratio: 1.539769e-01	ci left: 1.829065e-04	ci right 2.137087e-04	k: 647	n:3270000
UBAP2L   3270000 perm   4243 sec   (771 perm/sec)   p_kst 1.978593e-04   p_cons 6.522780e-01   p_joint 2.599388e-04

Joint ci ratio: 1.338871e-01	ci left: 2.437854e-04	ci right 2.790579e-04	k: 856	n:3280000
Cons ci ratio: 1.580462e-03	ci left: 6.517255e-01	ci right 6.527566e-01	k: 2139351	n:3280000
KS ci ratio: 1.533862e-01	ci left: 1.838146e-04	ci right 2.146401e-04	k: 652	n:3280000
UBAP2L   3280000 perm   4268 sec   (769 perm/sec)   p_kst 1.987805e-04   p_cons 6.522412e-01   p_joint 2.609756e-04

Joint ci ratio: 1.336534e-01	ci left: 2.439257e-04	ci right 2.791521e-04	k: 859	n:3290000
Cons ci ratio: 1.578100e-03	ci left: 6.517143e-01	ci right 6.527438e-01	k: 2145834	n:3290000
KS ci ratio: 1.532689e-01	ci left: 1.835482e-04	ci right 2.143033e-04	k: 653	n:3290000
UBAP2L   3290000 perm   4292 sec   (767 perm/sec)   p_kst 1.984802e-04   p_cons 6.522292e-01   p_joint 2.610942e-04

Joint ci ratio: 1.334209e-01	ci left: 2.440653e-04	ci right 2.792456e-04	k: 862	n:3300000
Cons ci ratio: 1.575747e-03	ci left: 6.517034e-01	ci right 6.527314e-01	k: 2152318	n:3300000
KS ci ratio: 1.529185e-01	ci left: 1.838663e-04	ci right 2.145977e-04	k: 656	n:3300000
UBAP2L   3300000 perm   4316 sec   (765 perm/sec)   p_kst 1.987879e-04   p_cons 6.522176e-01   p_joint 2.612121e-04

Joint ci ratio: 1.334209e-01	ci left: 2.433279e-04	ci right 2.784020e-04	k: 862	n:3310000
Cons ci ratio: 1.573298e-03	ci left: 6.517235e-01	ci right 6.527499e-01	k: 2158904	n:3310000
KS ci ratio: 1.529186e-01	ci left: 1.833108e-04	ci right 2.139494e-04	k: 656	n:3310000
UBAP2L   3310000 perm   4340 sec   (763 perm/sec)   p_kst 1.981873e-04   p_cons 6.522369e-01   p_joint 2.604230e-04

Joint ci ratio: 1.332666e-01	ci left: 2.431773e-04	ci right 2.781859e-04	k: 864	n:3320000
Cons ci ratio: 1.570940e-03	ci left: 6.517205e-01	ci right 6.527455e-01	k: 2165414	n:3320000
KS ci ratio: 1.528023e-01	ci left: 1.830483e-04	ci right 2.136177e-04	k: 657	n:3320000
UBAP2L   3320000 perm   4365 sec   (761 perm/sec)   p_kst 1.978916e-04   p_cons 6.522331e-01   p_joint 2.602410e-04

Joint ci ratio: 1.329595e-01	ci left: 2.436083e-04	ci right 2.785917e-04	k: 868	n:3330000
Cons ci ratio: 1.568525e-03	ci left: 6.517371e-01	ci right 6.527605e-01	k: 2171989	n:3330000
KS ci ratio: 1.524552e-01	ci left: 1.833651e-04	ci right 2.139115e-04	k: 660	n:3330000
UBAP2L   3330000 perm   4390 sec   (759 perm/sec)   p_kst 1.981982e-04   p_cons 6.522489e-01   p_joint 2.606607e-04

Joint ci ratio: 1.328068e-01	ci left: 2.434578e-04	ci right 2.783763e-04	k: 870	n:3340000
Cons ci ratio: 1.566236e-03	ci left: 6.517201e-01	ci right 6.527419e-01	k: 2178452	n:3340000
KS ci ratio: 1.522251e-01	ci left: 1.833921e-04	ci right 2.138927e-04	k: 662	n:3340000
UBAP2L   3340000 perm   4414 sec   (757 perm/sec)   p_kst 1.982036e-04   p_cons 6.522311e-01   p_joint 2.604790e-04

Joint ci ratio: 1.325787e-01	ci left: 2.435969e-04	ci right 2.784705e-04	k: 873	n:3350000
Cons ci ratio: 1.563844e-03	ci left: 6.517363e-01	ci right 6.527566e-01	k: 2185026	n:3350000
KS ci ratio: 1.518818e-01	ci left: 1.837061e-04	ci right 2.141837e-04	k: 665	n:3350000
UBAP2L   3350000 perm   4438 sec   (755 perm/sec)   p_kst 1.985075e-04   p_cons 6.522466e-01   p_joint 2.605970e-04

Joint ci ratio: 1.322763e-01	ci left: 2.440229e-04	ci right 2.788716e-04	k: 877	n:3360000
Cons ci ratio: 1.561422e-03	ci left: 6.517640e-01	ci right 6.527828e-01	k: 2191639	n:3360000
KS ci ratio: 1.518818e-01	ci left: 1.831593e-04	ci right 2.135463e-04	k: 665	n:3360000
UBAP2L   3360000 perm   4463 sec   (753 perm/sec)   p_kst 1.979167e-04   p_cons 6.522735e-01   p_joint 2.610119e-04

Joint ci ratio: 1.319012e-01	ci left: 2.447335e-04	ci right 2.795768e-04	k: 882	n:3370000
Cons ci ratio: 1.559130e-03	ci left: 6.517571e-01	ci right 6.527744e-01	k: 2198136	n:3370000
KS ci ratio: 1.515409e-01	ci left: 1.834723e-04	ci right 2.138366e-04	k: 668	n:3370000
UBAP2L   3370000 perm   4488 sec   (751 perm/sec)   p_kst 1.982196e-04   p_cons 6.522659e-01   p_joint 2.617211e-04

Joint ci ratio: 1.315293e-01	ci left: 2.454400e-04	ci right 2.802777e-04	k: 887	n:3380000
Cons ci ratio: 1.556858e-03	ci left: 6.517473e-01	ci right 6.527631e-01	k: 2204623	n:3380000
KS ci ratio: 1.510898e-01	ci left: 1.840681e-04	ci right 2.144321e-04	k: 672	n:3380000
UBAP2L   3380000 perm   4513 sec   (749 perm/sec)   p_kst 1.988166e-04   p_cons 6.522553e-01   p_joint 2.624260e-04

Joint ci ratio: 1.313814e-01	ci left: 2.452865e-04	ci right 2.800602e-04	k: 889	n:3390000
Cons ci ratio: 1.554414e-03	ci left: 6.517907e-01	ci right 6.528049e-01	k: 2211290	n:3390000
KS ci ratio: 1.508658e-01	ci left: 1.840928e-04	ci right 2.144118e-04	k: 674	n:3390000
UBAP2L   3390000 perm   4537 sec   (747 perm/sec)   p_kst 1.988201e-04   p_cons 6.522979e-01   p_joint 2.622419e-04

Joint ci ratio: 1.313077e-01	ci left: 2.448495e-04	ci right 2.795403e-04	k: 890	n:3400000
Cons ci ratio: 1.552148e-03	ci left: 6.517853e-01	ci right 6.527980e-01	k: 2217792	n:3400000
KS ci ratio: 1.507542e-01	ci left: 1.838344e-04	ci right 2.140864e-04	k: 675	n:3400000
UBAP2L   3400000 perm   4562 sec   (745 perm/sec)   p_kst 1.985294e-04   p_cons 6.522918e-01   p_joint 2.617647e-04

Joint ci ratio: 1.224816e-01	ci left: 2.818982e-04	ci right 3.189590e-04	k: 1023	n:3410000
Cons ci ratio: 1.549841e-03	ci left: 6.517945e-01	ci right 6.528058e-01	k: 2224344	n:3410000
KS ci ratio: 1.504208e-01	ci left: 1.841419e-04	ci right 2.143715e-04	k: 678	n:3410000
UBAP2L   3410000 perm   4587 sec   (743 perm/sec)   p_kst 1.988270e-04   p_cons 6.523003e-01   p_joint 3.000000e-04

Joint ci ratio: 1.223026e-01	ci left: 2.819243e-04	ci right 3.189304e-04	k: 1026	n:3420000
Cons ci ratio: 1.547635e-03	ci left: 6.517772e-01	ci right 6.527869e-01	k: 2230805	n:3420000
KS ci ratio: 1.501997e-01	ci left: 1.841662e-04	ci right 2.143514e-04	k: 680	n:3420000
UBAP2L   3420000 perm   4612 sec   (742 perm/sec)   p_kst 1.988304e-04   p_cons 6.522822e-01   p_joint 3.000000e-04

Joint ci ratio: 1.186057e-01	ci left: 2.994821e-04	ci right 3.375214e-04	k: 1091	n:3430000
Cons ci ratio: 1.545478e-03	ci left: 6.517485e-01	ci right 6.527568e-01	k: 2237227	n:3430000
KS ci ratio: 1.495423e-01	ci left: 1.853130e-04	ci right 2.155413e-04	k: 686	n:3430000
UBAP2L   3430000 perm   4637 sec   (740 perm/sec)   p_kst 2.000000e-04   p_cons 6.522528e-01   p_joint 3.180758e-04

Joint ci ratio: 1.183890e-01	ci left: 2.997398e-04	ci right 3.377375e-04	k: 1095	n:3440000
Cons ci ratio: 1.543170e-03	ci left: 6.517668e-01	ci right 6.527736e-01	k: 2243810	n:3440000
KS ci ratio: 1.493251e-01	ci left: 1.853340e-04	ci right 2.155179e-04	k: 688	n:3440000
UBAP2L   3440000 perm   4663 sec   (738 perm/sec)   p_kst 2.000000e-04   p_cons 6.522703e-01   p_joint 3.183140e-04

Joint ci ratio: 1.182274e-01	ci left: 2.997148e-04	ci right 3.376538e-04	k: 1098	n:3450000
Cons ci ratio: 1.540886e-03	ci left: 6.517810e-01	ci right 6.527863e-01	k: 2250379	n:3450000
KS ci ratio: 1.491089e-01	ci left: 1.853548e-04	ci right 2.154945e-04	k: 690	n:3450000
UBAP2L   3450000 perm   4688 sec   (736 perm/sec)   p_kst 2.000000e-04   p_cons 6.522838e-01   p_joint 3.182609e-04

Joint ci ratio: 1.182274e-01	ci left: 2.988486e-04	ci right 3.366780e-04	k: 1098	n:3460000
Cons ci ratio: 1.538678e-03	ci left: 6.517757e-01	ci right 6.527796e-01	k: 2256881	n:3460000
KS ci ratio: 1.491089e-01	ci left: 1.848191e-04	ci right 2.148717e-04	k: 690	n:3460000
UBAP2L   3460000 perm   4713 sec   (734 perm/sec)   p_kst 1.994220e-04   p_cons 6.522777e-01   p_joint 3.173410e-04

Joint ci ratio: 1.180128e-01	ci left: 2.991060e-04	ci right 3.368945e-04	k: 1102	n:3470000
Cons ci ratio: 1.536536e-03	ci left: 6.517540e-01	ci right 6.527564e-01	k: 2263326	n:3470000
KS ci ratio: 1.487863e-01	ci left: 1.851188e-04	ci right 2.151492e-04	k: 693	n:3470000
UBAP2L   3470000 perm   4738 sec   (732 perm/sec)   p_kst 1.997118e-04   p_cons 6.522553e-01   p_joint 3.175793e-04

Joint ci ratio: 1.180129e-01	ci left: 2.982465e-04	ci right 3.359264e-04	k: 1102	n:3480000
Cons ci ratio: 1.534278e-03	ci left: 6.517689e-01	ci right 6.527699e-01	k: 2269898	n:3480000
KS ci ratio: 1.487863e-01	ci left: 1.845869e-04	ci right 2.145310e-04	k: 693	n:3480000
UBAP2L   3480000 perm   4764 sec   (731 perm/sec)   p_kst 1.991379e-04   p_cons 6.522695e-01   p_joint 3.166667e-04

Joint ci ratio: 1.203835e-01	ci left: 2.854383e-04	ci right 3.222759e-04	k: 1059	n:3490000
Cons ci ratio: 1.532084e-03	ci left: 6.517680e-01	ci right 6.527676e-01	k: 2276415	n:3490000
KS ci ratio: 1.485724e-01	ci left: 1.846097e-04	ci right 2.145107e-04	k: 695	n:3490000
UBAP2L   3490000 perm   4790 sec   (729 perm/sec)   p_kst 1.991404e-04   p_cons 6.522679e-01   p_joint 3.034384e-04

Joint ci ratio: 1.201006e-01	ci left: 2.860083e-04	ci right 3.228267e-04	k: 1064	n:3500000
Cons ci ratio: 1.529892e-03	ci left: 6.517694e-01	ci right 6.527675e-01	k: 2282940	n:3500000
KS ci ratio: 1.481472e-01	ci left: 1.851827e-04	ci right 2.150830e-04	k: 699	n:3500000
UBAP2L   3500000 perm   4815 sec   (727 perm/sec)   p_kst 1.997143e-04   p_cons 6.522686e-01   p_joint 3.040000e-04

Joint ci ratio: 1.197636e-01	ci left: 2.868516e-04	ci right 3.236676e-04	k: 1070	n:3510000
Cons ci ratio: 1.527698e-03	ci left: 6.517739e-01	ci right 6.527706e-01	k: 2289476	n:3510000
KS ci ratio: 1.476209e-01	ci left: 1.860269e-04	ci right 2.159474e-04	k: 704	n:3510000
UBAP2L   3510000 perm   4841 sec   (725 perm/sec)   p_kst 2.005698e-04   p_cons 6.522724e-01   p_joint 3.048433e-04

Joint ci ratio: 1.194295e-01	ci left: 2.876903e-04	ci right 3.245036e-04	k: 1076	n:3520000
Cons ci ratio: 1.525560e-03	ci left: 6.517647e-01	ci right 6.527600e-01	k: 2295964	n:3520000
KS ci ratio: 1.471001e-01	ci left: 1.868665e-04	ci right 2.168067e-04	k: 709	n:3520000
UBAP2L   3520000 perm   4867 sec   (723 perm/sec)   p_kst 2.014205e-04   p_cons 6.522625e-01   p_joint 3.056818e-04

Joint ci ratio: 1.190982e-01	ci left: 2.885243e-04	ci right 3.253347e-04	k: 1082	n:3530000
Cons ci ratio: 1.523458e-03	ci left: 6.517474e-01	ci right 6.527413e-01	k: 2302423	n:3530000
KS ci ratio: 1.466875e-01	ci left: 1.874287e-04	ci right 2.173673e-04	k: 713	n:3530000
UBAP2L   3530000 perm   4893 sec   (722 perm/sec)   p_kst 2.019830e-04   p_cons 6.522445e-01   p_joint 3.065156e-04

Joint ci ratio: 1.189884e-01	ci left: 2.882574e-04	ci right 3.249975e-04	k: 1084	n:3540000
Cons ci ratio: 1.521324e-03	ci left: 6.517423e-01	ci right 6.527348e-01	k: 2308925	n:3540000
KS ci ratio: 1.464824e-01	ci left: 1.874434e-04	ci right 2.173389e-04	k: 715	n:3540000
UBAP2L   3540000 perm   4918 sec   (720 perm/sec)   p_kst 2.019774e-04   p_cons 6.522387e-01   p_joint 3.062147e-04

Joint ci ratio: 1.187696e-01	ci left: 2.885387e-04	ci right 3.252422e-04	k: 1088	n:3550000
Cons ci ratio: 1.519106e-03	ci left: 6.517649e-01	ci right 6.527560e-01	k: 2315525	n:3550000
KS ci ratio: 1.462783e-01	ci left: 1.874582e-04	ci right 2.173107e-04	k: 717	n:3550000
UBAP2L   3550000 perm   4944 sec   (718 perm/sec)   p_kst 2.019718e-04   p_cons 6.522606e-01   p_joint 3.064789e-04

Joint ci ratio: 1.186607e-01	ci left: 2.882733e-04	ci right 3.249071e-04	k: 1090	n:3560000
Cons ci ratio: 1.516940e-03	ci left: 6.517750e-01	ci right 6.527647e-01	k: 2322081	n:3560000
KS ci ratio: 1.460750e-01	ci left: 1.874729e-04	ci right 2.172826e-04	k: 719	n:3560000
UBAP2L   3560000 perm   4970 sec   (716 perm/sec)   p_kst 2.019663e-04   p_cons 6.522699e-01   p_joint 3.061798e-04

Joint ci ratio: 1.184438e-01	ci left: 2.885530e-04	ci right 3.251506e-04	k: 1094	n:3570000
Cons ci ratio: 1.514809e-03	ci left: 6.517771e-01	ci right 6.527655e-01	k: 2328609	n:3570000
KS ci ratio: 1.457716e-01	ci left: 1.877574e-04	ci right 2.175450e-04	k: 722	n:3570000
UBAP2L   3570000 perm   4996 sec   (715 perm/sec)   p_kst 2.022409e-04   p_cons 6.522714e-01   p_joint 3.064426e-04

Joint ci ratio: 1.183358e-01	ci left: 2.882891e-04	ci right 3.248176e-04	k: 1096	n:3580000
Cons ci ratio: 1.512648e-03	ci left: 6.517910e-01	ci right 6.527780e-01	k: 2335179	n:3580000
KS ci ratio: 1.456709e-01	ci left: 1.875021e-04	ci right 2.172268e-04	k: 723	n:3580000
UBAP2L   3580000 perm   5022 sec   (713 perm/sec)   p_kst 2.019553e-04   p_cons 6.522846e-01   p_joint 3.061453e-04

Joint ci ratio: 1.182819e-01	ci left: 2.877564e-04	ci right 3.241996e-04	k: 1097	n:3590000
Cons ci ratio: 1.510601e-03	ci left: 6.517734e-01	ci right 6.527590e-01	k: 2341636	n:3590000
KS ci ratio: 1.455704e-01	ci left: 1.872482e-04	ci right 2.169104e-04	k: 724	n:3590000
UBAP2L   3590000 perm   5048 sec   (711 perm/sec)   p_kst 2.016713e-04   p_cons 6.522663e-01   p_joint 3.055710e-04

Joint ci ratio: 1.181744e-01	ci left: 2.874962e-04	ci right 3.238710e-04	k: 1099	n:3600000
Cons ci ratio: 1.508558e-03	ci left: 6.517569e-01	ci right 6.527412e-01	k: 2348097	n:3600000
KS ci ratio: 1.453701e-01	ci left: 1.872634e-04	ci right 2.168836e-04	k: 726	n:3600000
UBAP2L   3600000 perm   5075 sec   (709 perm/sec)   p_kst 2.016667e-04   p_cons 6.522492e-01   p_joint 3.052778e-04

Joint ci ratio: 1.181207e-01	ci left: 2.869686e-04	ci right 3.232591e-04	k: 1100	n:3610000
Cons ci ratio: 1.506474e-03	ci left: 6.517555e-01	ci right 6.527384e-01	k: 2354612	n:3610000
KS ci ratio: 1.453701e-01	ci left: 1.867446e-04	ci right 2.162829e-04	k: 726	n:3610000
UBAP2L   3610000 perm   5101 sec   (708 perm/sec)   p_kst 2.011080e-04   p_cons 6.522471e-01   p_joint 3.047091e-04

Joint ci ratio: 1.181208e-01	ci left: 2.861759e-04	ci right 3.223661e-04	k: 1100	n:3620000
Cons ci ratio: 1.504489e-03	ci left: 6.517271e-01	ci right 6.527086e-01	k: 2361029	n:3620000
KS ci ratio: 1.453701e-01	ci left: 1.862288e-04	ci right 2.156854e-04	k: 726	n:3620000
UBAP2L   3620000 perm   5127 sec   (706 perm/sec)   p_kst 2.005525e-04   p_cons 6.522180e-01   p_joint 3.038674e-04

Joint ci ratio: 1.179068e-01	ci left: 2.864569e-04	ci right 3.226125e-04	k: 1104	n:3630000
Cons ci ratio: 1.502399e-03	ci left: 6.517324e-01	ci right 6.527125e-01	k: 2367568	n:3630000
KS ci ratio: 1.450711e-01	ci left: 1.865122e-04	ci right 2.159477e-04	k: 729	n:3630000
UBAP2L   3630000 perm   5154 sec   (704 perm/sec)   p_kst 2.008264e-04   p_cons 6.522226e-01   p_joint 3.041322e-04

Joint ci ratio: 1.121186e-01	ci left: 3.168890e-04	ci right 3.547924e-04	k: 1221	n:3640000
Cons ci ratio: 1.500326e-03	ci left: 6.517355e-01	ci right 6.527143e-01	k: 2374099	n:3640000
KS ci ratio: 1.446752e-01	ci left: 1.870588e-04	ci right 2.164931e-04	k: 733	n:3640000
UBAP2L   3640000 perm   5181 sec   (703 perm/sec)   p_kst 2.013736e-04   p_cons 6.522250e-01   p_joint 3.354396e-04

Joint ci ratio: 1.119355e-01	ci left: 3.170860e-04	ci right 3.549470e-04	k: 1225	n:3650000
Cons ci ratio: 1.498340e-03	ci left: 6.517147e-01	ci right 6.526922e-01	k: 2380543	n:3650000
KS ci ratio: 1.442826e-01	ci left: 1.876026e-04	ci right 2.170355e-04	k: 737	n:3650000
UBAP2L   3650000 perm   5207 sec   (701 perm/sec)   p_kst 2.019178e-04   p_cons 6.522036e-01   p_joint 3.356164e-04

Joint ci ratio: 1.139042e-01	ci left: 3.050682e-04	ci right 3.421779e-04	k: 1183	n:3660000
Cons ci ratio: 1.496265e-03	ci left: 6.517236e-01	ci right 6.526997e-01	k: 2387095	n:3660000
KS ci ratio: 1.438931e-01	ci left: 1.881436e-04	ci right 2.175747e-04	k: 741	n:3660000
UBAP2L   3660000 perm   5234 sec   (699 perm/sec)   p_kst 2.024590e-04   p_cons 6.522117e-01   p_joint 3.232240e-04

Joint ci ratio: 1.136167e-01	ci left: 3.058253e-04	ci right 3.429269e-04	k: 1189	n:3670000
Cons ci ratio: 1.494228e-03	ci left: 6.517234e-01	ci right 6.526982e-01	k: 2393614	n:3670000
KS ci ratio: 1.434107e-01	ci left: 1.889443e-04	ci right 2.183932e-04	k: 746	n:3670000
UBAP2L   3670000 perm   5261 sec   (698 perm/sec)   p_kst 2.032698e-04   p_cons 6.522109e-01   p_joint 3.239782e-04

Joint ci ratio: 1.135690e-01	ci left: 3.052583e-04	ci right 3.422745e-04	k: 1190	n:3680000
Cons ci ratio: 1.492159e-03	ci left: 6.517354e-01	ci right 6.527089e-01	k: 2400178	n:3680000
KS ci ratio: 1.433148e-01	ci left: 1.886929e-04	ci right 2.180812e-04	k: 747	n:3680000
UBAP2L   3680000 perm   5288 sec   (696 perm/sec)   p_kst 2.029891e-04   p_cons 6.522223e-01   p_joint 3.233696e-04

Joint ci ratio: 1.134738e-01	ci left: 3.049576e-04	ci right 3.419043e-04	k: 1192	n:3690000
Cons ci ratio: 1.490173e-03	ci left: 6.517246e-01	ci right 6.526968e-01	k: 2406658	n:3690000
KS ci ratio: 1.431236e-01	ci left: 1.887041e-04	ci right 2.180516e-04	k: 749	n:3690000
UBAP2L   3690000 perm   5315 sec   (694 perm/sec)   p_kst 2.029810e-04   p_cons 6.522108e-01   p_joint 3.230352e-04

Joint ci ratio: 1.133788e-01	ci left: 3.046586e-04	ci right 3.415362e-04	k: 1194	n:3700000
Cons ci ratio: 1.488165e-03	ci left: 6.517234e-01	ci right 6.526942e-01	k: 2413173	n:3700000
KS ci ratio: 1.430283e-01	ci left: 1.884547e-04	ci right 2.177423e-04	k: 750	n:3700000
UBAP2L   3700000 perm   5341 sec   (693 perm/sec)   p_kst 2.027027e-04   p_cons 6.522089e-01   p_joint 3.227027e-04

Joint ci ratio: 1.132841e-01	ci left: 3.043612e-04	ci right 3.411699e-04	k: 1196	n:3710000
Cons ci ratio: 1.486225e-03	ci left: 6.517035e-01	ci right 6.526731e-01	k: 2419619	n:3710000
KS ci ratio: 1.430283e-01	ci left: 1.879467e-04	ci right 2.171553e-04	k: 750	n:3710000
UBAP2L   3710000 perm   5368 sec   (691 perm/sec)   p_kst 2.021563e-04   p_cons 6.521884e-01   p_joint 3.223720e-04

Joint ci ratio: 1.130953e-01	ci left: 3.045879e-04	ci right 3.413585e-04	k: 1200	n:3720000
Cons ci ratio: 1.484271e-03	ci left: 6.516902e-01	ci right 6.526585e-01	k: 2426089	n:3720000
KS ci ratio: 1.428383e-01	ci left: 1.879599e-04	ci right 2.171284e-04	k: 752	n:3720000
UBAP2L   3720000 perm   5395 sec   (690 perm/sec)   p_kst 2.021505e-04   p_cons 6.521745e-01   p_joint 3.225806e-04

Joint ci ratio: 1.129543e-01	ci left: 3.045529e-04	ci right 3.412704e-04	k: 1203	n:3730000
Cons ci ratio: 1.482306e-03	ci left: 6.516832e-01	ci right 6.526501e-01	k: 2432582	n:3730000
KS ci ratio: 1.426489e-01	ci left: 1.879730e-04	ci right 2.171017e-04	k: 754	n:3730000
UBAP2L   3730000 perm   5422 sec   (688 perm/sec)   p_kst 2.021448e-04   p_cons 6.521668e-01   p_joint 3.225201e-04

Joint ci ratio: 1.128138e-01	ci left: 3.045180e-04	ci right 3.411826e-04	k: 1206	n:3740000
Cons ci ratio: 1.480324e-03	ci left: 6.516834e-01	ci right 6.526490e-01	k: 2439102	n:3740000
KS ci ratio: 1.423664e-01	ci left: 1.882440e-04	ci right 2.173519e-04	k: 757	n:3740000
UBAP2L   3740000 perm   5449 sec   (686 perm/sec)   p_kst 2.024064e-04   p_cons 6.521663e-01   p_joint 3.224599e-04

Joint ci ratio: 1.127205e-01	ci left: 3.042243e-04	ci right 3.408212e-04	k: 1208	n:3750000
Cons ci ratio: 1.478361e-03	ci left: 6.516804e-01	ci right 6.526447e-01	k: 2445610	n:3750000
KS ci ratio: 1.422726e-01	ci left: 1.879992e-04	ci right 2.170484e-04	k: 758	n:3750000
UBAP2L   3750000 perm   5476 sec   (685 perm/sec)   p_kst 2.021333e-04   p_cons 6.521627e-01   p_joint 3.221333e-04

Joint ci ratio: 1.126274e-01	ci left: 3.039321e-04	ci right 3.404617e-04	k: 1210	n:3760000
Cons ci ratio: 1.476383e-03	ci left: 6.516843e-01	ci right 6.526474e-01	k: 2452144	n:3760000
KS ci ratio: 1.422726e-01	ci left: 1.874992e-04	ci right 2.164712e-04	k: 758	n:3760000
UBAP2L   3760000 perm   5504 sec   (683 perm/sec)   p_kst 2.015957e-04   p_cons 6.521660e-01   p_joint 3.218085e-04

Joint ci ratio: 1.122111e-01	ci left: 3.054461e-04	ci right 3.420129e-04	k: 1219	n:3770000
Cons ci ratio: 1.474381e-03	ci left: 6.516980e-01	ci right 6.526598e-01	k: 2458715	n:3770000
KS ci ratio: 1.416209e-01	ci left: 1.887926e-04	ci right 2.178196e-04	k: 765	n:3770000
UBAP2L   3770000 perm   5531 sec   (682 perm/sec)   p_kst 2.029178e-04   p_cons 6.521790e-01   p_joint 3.233422e-04

Joint ci ratio: 1.122111e-01	ci left: 3.046380e-04	ci right 3.411081e-04	k: 1219	n:3780000
Cons ci ratio: 1.472322e-03	ci left: 6.517318e-01	ci right 6.526923e-01	k: 2465362	n:3780000
KS ci ratio: 1.416210e-01	ci left: 1.882932e-04	ci right 2.172434e-04	k: 765	n:3780000
UBAP2L   3780000 perm   5559 sec   (680 perm/sec)   p_kst 2.023810e-04   p_cons 6.522122e-01   p_joint 3.224868e-04

Joint ci ratio: 1.121193e-01	ci left: 3.043471e-04	ci right 3.407506e-04	k: 1221	n:3790000
Cons ci ratio: 1.470377e-03	ci left: 6.517329e-01	ci right 6.526922e-01	k: 2471886	n:3790000
KS ci ratio: 1.415287e-01	ci left: 1.880509e-04	ci right 2.169434e-04	k: 766	n:3790000
UBAP2L   3790000 perm   5586 sec   (678 perm/sec)   p_kst 2.021108e-04   p_cons 6.522127e-01   p_joint 3.221636e-04

Joint ci ratio: 1.118906e-01	ci left: 3.048251e-04	ci right 3.412065e-04	k: 1226	n:3800000
Cons ci ratio: 1.468455e-03	ci left: 6.517293e-01	ci right 6.526873e-01	k: 2478392	n:3800000
KS ci ratio: 1.410695e-01	ci left: 1.888253e-04	ci right 2.177348e-04	k: 771	n:3800000
UBAP2L   3800000 perm   5613 sec   (677 perm/sec)   p_kst 2.028947e-04   p_cons 6.522084e-01   p_joint 3.226316e-04

Joint ci ratio: 1.116633e-01	ci left: 3.053007e-04	ci right 3.416600e-04	k: 1231	n:3810000
Cons ci ratio: 1.466503e-03	ci left: 6.517370e-01	ci right 6.526937e-01	k: 2484941	n:3810000
KS ci ratio: 1.408872e-01	ci left: 1.888361e-04	ci right 2.177067e-04	k: 773	n:3810000
UBAP2L   3810000 perm   5640 sec   (675 perm/sec)   p_kst 2.028871e-04   p_cons 6.522155e-01   p_joint 3.230971e-04

Joint ci ratio: 1.116180e-01	ci left: 3.047559e-04	ci right 3.410347e-04	k: 1232	n:3820000
Cons ci ratio: 1.464619e-03	ci left: 6.517263e-01	ci right 6.526818e-01	k: 2491420	n:3820000
KS ci ratio: 1.408872e-01	ci left: 1.883418e-04	ci right 2.171368e-04	k: 773	n:3820000
UBAP2L   3820000 perm   5668 sec   (674 perm/sec)   p_kst 2.023560e-04   p_cons 6.522042e-01   p_joint 3.225131e-04

Joint ci ratio: 1.115276e-01	ci left: 3.044679e-04	ci right 3.406810e-04	k: 1234	n:3830000
Cons ci ratio: 1.462747e-03	ci left: 6.517142e-01	ci right 6.526684e-01	k: 2497893	n:3830000
KS ci ratio: 1.408872e-01	ci left: 1.878500e-04	ci right 2.165699e-04	k: 773	n:3830000
UBAP2L   3830000 perm   5695 sec   (672 perm/sec)   p_kst 2.018277e-04   p_cons 6.521914e-01   p_joint 3.221932e-04

Joint ci ratio: 1.115277e-01	ci left: 3.036750e-04	ci right 3.397938e-04	k: 1234	n:3840000
Cons ci ratio: 1.460860e-03	ci left: 6.517088e-01	ci right 6.526618e-01	k: 2504392	n:3840000
KS ci ratio: 1.408873e-01	ci left: 1.873608e-04	ci right 2.160059e-04	k: 773	n:3840000
UBAP2L   3840000 perm   5723 sec   (671 perm/sec)   p_kst 2.013021e-04   p_cons 6.521854e-01   p_joint 3.213542e-04

Joint ci ratio: 1.113925e-01	ci left: 3.036437e-04	ci right 3.397122e-04	k: 1237	n:3850000
Cons ci ratio: 1.458961e-03	ci left: 6.517097e-01	ci right 6.526615e-01	k: 2510915	n:3850000
KS ci ratio: 1.406150e-01	ci left: 1.876259e-04	ci right 2.162515e-04	k: 776	n:3850000
UBAP2L   3850000 perm   5751 sec   (669 perm/sec)   p_kst 2.015584e-04   p_cons 6.521857e-01   p_joint 3.212987e-04

Joint ci ratio: 1.110788e-01	ci left: 3.046201e-04	ci right 3.406960e-04	k: 1244	n:3860000
Cons ci ratio: 1.457041e-03	ci left: 6.517194e-01	ci right 6.526700e-01	k: 2517472	n:3860000
KS ci ratio: 1.402544e-01	ci left: 1.881397e-04	ci right 2.167639e-04	k: 780	n:3860000
UBAP2L   3860000 perm   5779 sec   (668 perm/sec)   p_kst 2.020725e-04   p_cons 6.521948e-01   p_joint 3.222798e-04

Joint ci ratio: 1.109452e-01	ci left: 3.045866e-04	ci right 3.406124e-04	k: 1247	n:3870000
Cons ci ratio: 1.455110e-03	ci left: 6.517348e-01	ci right 6.526841e-01	k: 2524051	n:3870000
KS ci ratio: 1.400752e-01	ci left: 1.881523e-04	ci right 2.167387e-04	k: 782	n:3870000
UBAP2L   3870000 perm   5807 sec   (666 perm/sec)   p_kst 2.020672e-04   p_cons 6.522096e-01   p_joint 3.222222e-04

Joint ci ratio: 1.107679e-01	ci left: 3.048039e-04	ci right 3.407940e-04	k: 1251	n:3880000
Cons ci ratio: 1.453220e-03	ci left: 6.517395e-01	ci right 6.526876e-01	k: 2530589	n:3880000
KS ci ratio: 1.398966e-01	ci left: 1.881647e-04	ci right 2.167136e-04	k: 784	n:3880000
UBAP2L   3880000 perm   5835 sec   (665 perm/sec)   p_kst 2.020619e-04   p_cons 6.522137e-01   p_joint 3.224227e-04

Joint ci ratio: 1.106354e-01	ci left: 3.047702e-04	ci right 3.407105e-04	k: 1254	n:3890000
Cons ci ratio: 1.451406e-03	ci left: 6.517229e-01	ci right 6.526697e-01	k: 2537044	n:3890000
KS ci ratio: 1.397188e-01	ci left: 1.881772e-04	ci right 2.166886e-04	k: 786	n:3890000
UBAP2L   3890000 perm   5864 sec   (663 perm/sec)   p_kst 2.020566e-04   p_cons 6.521964e-01   p_joint 3.223650e-04

Joint ci ratio: 1.104595e-01	ci left: 3.049861e-04	ci right 3.408908e-04	k: 1258	n:3900000
Cons ci ratio: 1.449562e-03	ci left: 6.517178e-01	ci right 6.526635e-01	k: 2543544	n:3900000
KS ci ratio: 1.395416e-01	ci left: 1.881896e-04	ci right 2.166637e-04	k: 788	n:3900000
UBAP2L   3900000 perm   5892 sec   (662 perm/sec)   p_kst 2.020513e-04   p_cons 6.521908e-01   p_joint 3.225641e-04

Joint ci ratio: 1.103281e-01	ci left: 3.049521e-04	ci right 3.408074e-04	k: 1261	n:3910000
Cons ci ratio: 1.447684e-03	ci left: 6.517259e-01	ci right 6.526703e-01	k: 2550095	n:3910000
KS ci ratio: 1.392770e-01	ci left: 1.884488e-04	ci right 2.169036e-04	k: 791	n:3910000
UBAP2L   3910000 perm   5920 sec   (660 perm/sec)   p_kst 2.023018e-04   p_cons 6.521982e-01   p_joint 3.225064e-04

Joint ci ratio: 1.136179e-01	ci left: 2.863210e-04	ci right 3.210568e-04	k: 1189	n:3920000
Cons ci ratio: 1.445856e-03	ci left: 6.517204e-01	ci right 6.526636e-01	k: 2556593	n:3920000
KS ci ratio: 1.392770e-01	ci left: 1.879680e-04	ci right 2.163503e-04	k: 791	n:3920000
UBAP2L   3920000 perm   5948 sec   (659 perm/sec)   p_kst 2.017857e-04   p_cons 6.521921e-01   p_joint 3.033163e-04

Joint ci ratio: 1.134274e-01	ci left: 2.865813e-04	ci right 3.212865e-04	k: 1193	n:3930000
Cons ci ratio: 1.444037e-03	ci left: 6.517139e-01	ci right 6.526559e-01	k: 2563087	n:3930000
KS ci ratio: 1.390140e-01	ci left: 1.882265e-04	ci right 2.165897e-04	k: 794	n:3930000
UBAP2L   3930000 perm   5976 sec   (658 perm/sec)   p_kst 2.020356e-04   p_cons 6.521850e-01   p_joint 3.035623e-04

Joint ci ratio: 1.131906e-01	ci left: 2.870871e-04	ci right 3.217761e-04	k: 1198	n:3940000
Cons ci ratio: 1.442187e-03	ci left: 6.517198e-01	ci right 6.526607e-01	k: 2569630	n:3940000
KS ci ratio: 1.385788e-01	ci left: 1.889738e-04	ci right 2.173530e-04	k: 799	n:3940000
UBAP2L   3940000 perm   6005 sec   (656 perm/sec)   p_kst 2.027919e-04   p_cons 6.521904e-01   p_joint 3.040609e-04

Joint ci ratio: 1.129084e-01	ci left: 2.878363e-04	ci right 3.225234e-04	k: 1204	n:3950000
Cons ci ratio: 1.440361e-03	ci left: 6.517202e-01	ci right 6.526598e-01	k: 2576151	n:3950000
KS ci ratio: 1.380620e-01	ci left: 1.899618e-04	ci right 2.183743e-04	k: 805	n:3950000
UBAP2L   3950000 perm   6033 sec   (655 perm/sec)   p_kst 2.037975e-04   p_cons 6.521901e-01   p_joint 3.048101e-04

Joint ci ratio: 1.126283e-01	ci left: 2.885819e-04	ci right 3.232668e-04	k: 1210	n:3960000
Cons ci ratio: 1.438579e-03	ci left: 6.517087e-01	ci right 6.526471e-01	k: 2582625	n:3960000
KS ci ratio: 1.375509e-01	ci left: 1.909450e-04	ci right 2.193902e-04	k: 811	n:3960000
UBAP2L   3960000 perm   6061 sec   (653 perm/sec)   p_kst 2.047980e-04   p_cons 6.521780e-01   p_joint 3.055556e-04

Joint ci ratio: 1.123965e-01	ci left: 2.890790e-04	ci right 3.237474e-04	k: 1215	n:3970000
Cons ci ratio: 1.436736e-03	ci left: 6.517189e-01	ci right 6.526562e-01	k: 2589185	n:3970000
KS ci ratio: 1.372133e-01	ci left: 1.914370e-04	ci right 2.198797e-04	k: 815	n:3970000
UBAP2L   3970000 perm   6090 sec   (652 perm/sec)   p_kst 2.052897e-04   p_cons 6.521877e-01   p_joint 3.060453e-04

Joint ci ratio: 1.122121e-01	ci left: 2.893294e-04	ci right 3.239672e-04	k: 1219	n:3980000
Cons ci ratio: 1.434876e-03	ci left: 6.517364e-01	ci right 6.526724e-01	k: 2595774	n:3980000
KS ci ratio: 1.370455e-01	ci left: 1.914413e-04	ci right 2.198470e-04	k: 817	n:3980000
UBAP2L   3980000 perm   6119 sec   (650 perm/sec)   p_kst 2.052764e-04   p_cons 6.522045e-01   p_joint 3.062814e-04

Joint ci ratio: 1.121202e-01	ci left: 2.890915e-04	ci right 3.236705e-04	k: 1221	n:3990000
Cons ci ratio: 1.433147e-03	ci left: 6.517149e-01	ci right 6.526498e-01	k: 2602208	n:3990000
KS ci ratio: 1.368783e-01	ci left: 1.914455e-04	ci right 2.198144e-04	k: 819	n:3990000
UBAP2L   3990000 perm   6148 sec   (649 perm/sec)   p_kst 2.052632e-04   p_cons 6.521825e-01   p_joint 3.060150e-04

Joint ci ratio: 1.118915e-01	ci left: 2.895837e-04	ci right 3.241464e-04	k: 1226	n:4000000
Cons ci ratio: 1.431373e-03	ci left: 6.517095e-01	ci right 6.526433e-01	k: 2608706	n:4000000
KS ci ratio: 1.366285e-01	ci left: 1.916913e-04	ci right 2.200405e-04	k: 822	n:4000000
UBAP2L   4000000 perm   6176 sec   (648 perm/sec)   p_kst 2.055000e-04   p_cons 6.521765e-01   p_joint 3.065000e-04

Joint ci ratio: 1.118004e-01	ci left: 2.893464e-04	ci right 3.238507e-04	k: 1228	n:4010000
Cons ci ratio: 1.429608e-03	ci left: 6.517034e-01	ci right 6.526360e-01	k: 2615201	n:4010000
KS ci ratio: 1.366286e-01	ci left: 1.912132e-04	ci right 2.194918e-04	k: 822	n:4010000
UBAP2L   4010000 perm   6205 sec   (646 perm/sec)   p_kst 2.049875e-04   p_cons 6.521698e-01   p_joint 3.062344e-04

Joint ci ratio: 1.117096e-01	ci left: 2.891102e-04	ci right 3.235565e-04	k: 1230	n:4020000
Cons ci ratio: 1.427866e-03	ci left: 6.516921e-01	ci right 6.526236e-01	k: 2621675	n:4020000
KS ci ratio: 1.366286e-01	ci left: 1.907376e-04	ci right 2.189458e-04	k: 822	n:4020000
UBAP2L   4020000 perm   6234 sec   (645 perm/sec)   p_kst 2.044776e-04   p_cons 6.521580e-01   p_joint 3.059701e-04

Joint ci ratio: 1.113933e-01	ci left: 2.900813e-04	ci right 3.245391e-04	k: 1237	n:4030000
Cons ci ratio: 1.426072e-03	ci left: 6.516998e-01	ci right 6.526300e-01	k: 2628225	n:4030000
KS ci ratio: 1.362978e-01	ci left: 1.912229e-04	ci right 2.194289e-04	k: 826	n:4030000
UBAP2L   4030000 perm   6263 sec   (643 perm/sec)   p_kst 2.049628e-04   p_cons 6.521650e-01   p_joint 3.069479e-04

Joint ci ratio: 1.112137e-01	ci left: 2.903259e-04	ci right 3.247534e-04	k: 1241	n:4040000
Cons ci ratio: 1.424320e-03	ci left: 6.516957e-01	ci right 6.526248e-01	k: 2634728	n:4040000
KS ci ratio: 1.360512e-01	ci left: 1.914669e-04	ci right 2.196536e-04	k: 829	n:4040000
UBAP2L   4040000 perm   6291 sec   (642 perm/sec)   p_kst 2.051980e-04   p_cons 6.521604e-01   p_joint 3.071782e-04

Joint ci ratio: 1.111690e-01	ci left: 2.898490e-04	ci right 3.242053e-04	k: 1242	n:4050000
Cons ci ratio: 1.422494e-03	ci left: 6.517174e-01	ci right 6.526453e-01	k: 2641335	n:4050000
KS ci ratio: 1.360512e-01	ci left: 1.909941e-04	ci right 2.191113e-04	k: 829	n:4050000
UBAP2L   4050000 perm   6320 sec   (641 perm/sec)   p_kst 2.046914e-04   p_cons 6.521815e-01   p_joint 3.066667e-04

Joint ci ratio: 1.110351e-01	ci left: 2.898535e-04	ci right 3.241662e-04	k: 1245	n:4060000
Cons ci ratio: 1.420744e-03	ci left: 6.517170e-01	ci right 6.526438e-01	k: 2647853	n:4060000
KS ci ratio: 1.358876e-01	ci left: 1.909996e-04	ci right 2.190810e-04	k: 831	n:4060000
UBAP2L   4060000 perm   6349 sec   (639 perm/sec)   p_kst 2.046798e-04   p_cons 6.521805e-01   p_joint 3.066502e-04

Joint ci ratio: 1.109461e-01	ci left: 2.896191e-04	ci right 3.238748e-04	k: 1247	n:4070000
Cons ci ratio: 1.418989e-03	ci left: 6.517203e-01	ci right 6.526460e-01	k: 2654386	n:4070000
KS ci ratio: 1.357246e-01	ci left: 1.910050e-04	ci right 2.190508e-04	k: 833	n:4070000
UBAP2L   4070000 perm   6379 sec   (638 perm/sec)   p_kst 2.046683e-04   p_cons 6.521833e-01   p_joint 3.063882e-04

Joint ci ratio: 1.108130e-01	ci left: 2.896241e-04	ci right 3.238367e-04	k: 1250	n:4080000
Cons ci ratio: 1.417272e-03	ci left: 6.517136e-01	ci right 6.526381e-01	k: 2660878	n:4080000
KS ci ratio: 1.355621e-01	ci left: 1.910104e-04	ci right 2.190207e-04	k: 835	n:4080000
UBAP2L   4080000 perm   6409 sec   (637 perm/sec)   p_kst 2.046569e-04   p_cons 6.521760e-01   p_joint 3.063725e-04

Joint ci ratio: 1.107688e-01	ci left: 2.891537e-04	ci right 3.232962e-04	k: 1251	n:4090000
Cons ci ratio: 1.415487e-03	ci left: 6.517309e-01	ci right 6.526543e-01	k: 2667468	n:4090000
KS ci ratio: 1.355622e-01	ci left: 1.905434e-04	ci right 2.184852e-04	k: 835	n:4090000
UBAP2L   4090000 perm   6438 sec   (635 perm/sec)   p_kst 2.041565e-04   p_cons 6.521927e-01   p_joint 3.058680e-04

Joint ci ratio: 1.107246e-01	ci left: 2.886856e-04	ci right 3.227583e-04	k: 1252	n:4100000
Cons ci ratio: 1.413790e-03	ci left: 6.517214e-01	ci right 6.526437e-01	k: 2673949	n:4100000
KS ci ratio: 1.354812e-01	ci left: 1.903143e-04	ci right 2.182045e-04	k: 836	n:4100000
UBAP2L   4100000 perm   6468 sec   (634 perm/sec)   p_kst 2.039024e-04   p_cons 6.521827e-01   p_joint 3.053659e-04

Joint ci ratio: 1.104165e-01	ci left: 2.896393e-04	ci right 3.237232e-04	k: 1259	n:4110000
Cons ci ratio: 1.412052e-03	ci left: 6.517276e-01	ci right 6.526488e-01	k: 2680494	n:4110000
KS ci ratio: 1.350783e-01	ci left: 1.910266e-04	ci right 2.189313e-04	k: 841	n:4110000
UBAP2L   4110000 perm   6497 sec   (633 perm/sec)   p_kst 2.046229e-04   p_cons 6.521883e-01   p_joint 3.063260e-04

Joint ci ratio: 1.102417e-01	ci left: 2.898804e-04	ci right 3.239352e-04	k: 1263	n:4120000
Cons ci ratio: 1.410333e-03	ci left: 6.517294e-01	ci right 6.526495e-01	k: 2687021	n:4120000
KS ci ratio: 1.349981e-01	ci left: 1.907975e-04	ci right 2.186508e-04	k: 842	n:4120000
UBAP2L   4120000 perm   6527 sec   (631 perm/sec)   p_kst 2.043689e-04   p_cons 6.521896e-01   p_joint 3.065534e-04

Joint ci ratio: 1.100677e-01	ci left: 2.901203e-04	ci right 3.241460e-04	k: 1267	n:4130000
Cons ci ratio: 1.408642e-03	ci left: 6.517245e-01	ci right 6.526434e-01	k: 2693520	n:4130000
KS ci ratio: 1.348383e-01	ci left: 1.908034e-04	ci right 2.186220e-04	k: 844	n:4130000
UBAP2L   4130000 perm   6557 sec   (630 perm/sec)   p_kst 2.043584e-04   p_cons 6.521840e-01   p_joint 3.067797e-04

Joint ci ratio: 1.099810e-01	ci left: 2.898894e-04	ci right 3.238594e-04	k: 1269	n:4140000
Cons ci ratio: 1.407036e-03	ci left: 6.516939e-01	ci right 6.526117e-01	k: 2699913	n:4140000
KS ci ratio: 1.347586e-01	ci left: 1.905759e-04	ci right 2.183436e-04	k: 845	n:4140000
UBAP2L   4140000 perm   6587 sec   (629 perm/sec)   p_kst 2.041063e-04   p_cons 6.521529e-01   p_joint 3.065217e-04

Joint ci ratio: 1.097220e-01	ci left: 2.905969e-04	ci right 3.245645e-04	k: 1275	n:4150000
Cons ci ratio: 1.405374e-03	ci left: 6.516835e-01	ci right 6.526002e-01	k: 2706389	n:4150000
KS ci ratio: 1.345203e-01	ci left: 1.908152e-04	ci right 2.185647e-04	k: 848	n:4150000
UBAP2L   4150000 perm   6617 sec   (627 perm/sec)   p_kst 2.043373e-04   p_cons 6.521419e-01   p_joint 3.072289e-04

Joint ci ratio: 1.043395e-01	ci left: 3.214824e-04	ci right 3.571038e-04	k: 1410	n:4160000
Cons ci ratio: 1.403657e-03	ci left: 6.516926e-01	ci right 6.526082e-01	k: 2712946	n:4160000
KS ci ratio: 1.340474e-01	ci left: 1.917504e-04	ci right 2.195300e-04	k: 854	n:4160000
UBAP2L   4160000 perm   6647 sec   (626 perm/sec)   p_kst 2.052885e-04   p_cons 6.521505e-01   p_joint 3.389423e-04

Joint ci ratio: 1.041551e-01	ci left: 3.218792e-04	ci right 3.574777e-04	k: 1415	n:4170000
Cons ci ratio: 1.401968e-03	ci left: 6.516949e-01	ci right 6.526094e-01	k: 2719475	n:4170000
KS ci ratio: 1.338909e-01	ci left: 1.917541e-04	ci right 2.194992e-04	k: 856	n:4170000
UBAP2L   4170000 perm   6677 sec   (625 perm/sec)   p_kst 2.052758e-04   p_cons 6.521523e-01   p_joint 3.393285e-04

Joint ci ratio: 1.039717e-01	ci left: 3.222742e-04	ci right 3.578498e-04	k: 1420	n:4180000
Cons ci ratio: 1.400298e-03	ci left: 6.516927e-01	ci right 6.526061e-01	k: 2725985	n:4180000
KS ci ratio: 1.336571e-01	ci left: 1.919891e-04	ci right 2.197158e-04	k: 859	n:4180000
UBAP2L   4180000 perm   6707 sec   (623 perm/sec)   p_kst 2.055024e-04   p_cons 6.521495e-01   p_joint 3.397129e-04

Joint ci ratio: 1.038257e-01	ci left: 3.224349e-04	ci right 3.579752e-04	k: 1424	n:4190000
Cons ci ratio: 1.398647e-03	ci left: 6.516864e-01	ci right 6.525988e-01	k: 2732478	n:4190000
KS ci ratio: 1.335020e-01	ci left: 1.919922e-04	ci right 2.196847e-04	k: 861	n:4190000
UBAP2L   4190000 perm   6737 sec   (622 perm/sec)   p_kst 2.054893e-04   p_cons 6.521427e-01   p_joint 3.398568e-04

Joint ci ratio: 1.037166e-01	ci left: 3.223629e-04	ci right 3.578557e-04	k: 1427	n:4200000
Cons ci ratio: 1.397011e-03	ci left: 6.516774e-01	ci right 6.525886e-01	k: 2738959	n:4200000
KS ci ratio: 1.332703e-01	ci left: 1.922256e-04	ci right 2.198997e-04	k: 864	n:4200000
UBAP2L   4200000 perm   6768 sec   (621 perm/sec)   p_kst 2.057143e-04   p_cons 6.521331e-01   p_joint 3.397619e-04

Joint ci ratio: 1.037166e-01	ci left: 3.215972e-04	ci right 3.570057e-04	k: 1427	n:4210000
Cons ci ratio: 1.395386e-03	ci left: 6.516664e-01	ci right 6.525766e-01	k: 2745432	n:4210000
KS ci ratio: 1.332703e-01	ci left: 1.917690e-04	ci right 2.193774e-04	k: 864	n:4210000
UBAP2L   4210000 perm   6798 sec   (619 perm/sec)   p_kst 2.052257e-04   p_cons 6.521216e-01   p_joint 3.389549e-04

Joint ci ratio: 1.036803e-01	ci left: 3.210660e-04	ci right 3.564028e-04	k: 1428	n:4220000
Cons ci ratio: 1.393693e-03	ci left: 6.516797e-01	ci right 6.525888e-01	k: 2752007	n:4220000
KS ci ratio: 1.331933e-01	ci left: 1.915436e-04	ci right 2.191024e-04	k: 865	n:4220000
UBAP2L   4220000 perm   6827 sec   (618 perm/sec)   p_kst 2.049763e-04   p_cons 6.521344e-01   p_joint 3.383886e-04

Joint ci ratio: 1.034994e-01	ci left: 3.214584e-04	ci right 3.567729e-04	k: 1433	n:4230000
Cons ci ratio: 1.392079e-03	ci left: 6.516688e-01	ci right 6.525768e-01	k: 2758480	n:4230000
KS ci ratio: 1.330398e-01	ci left: 1.915478e-04	ci right 2.190730e-04	k: 867	n:4230000
UBAP2L   4230000 perm   6857 sec   (617 perm/sec)   p_kst 2.049645e-04   p_cons 6.521229e-01   p_joint 3.387707e-04

Joint ci ratio: 1.033913e-01	ci left: 3.213894e-04	ci right 3.566573e-04	k: 1436	n:4240000
Cons ci ratio: 1.390409e-03	ci left: 6.516785e-01	ci right 6.525854e-01	k: 2765040	n:4240000
KS ci ratio: 1.330398e-01	ci left: 1.910961e-04	ci right 2.185563e-04	k: 867	n:4240000
UBAP2L   4240000 perm   6888 sec   (616 perm/sec)   p_kst 2.044811e-04   p_cons 6.521321e-01   p_joint 3.386792e-04

Joint ci ratio: 1.032836e-01	ci left: 3.213209e-04	ci right 3.565422e-04	k: 1439	n:4250000
Cons ci ratio: 1.388771e-03	ci left: 6.516792e-01	ci right 6.525851e-01	k: 2771562	n:4250000
KS ci ratio: 1.329633e-01	ci left: 1.908739e-04	ci right 2.182852e-04	k: 868	n:4250000
UBAP2L   4250000 perm   6918 sec   (614 perm/sec)   p_kst 2.042353e-04   p_cons 6.521322e-01   p_joint 3.385882e-04

Joint ci ratio: 1.031047e-01	ci left: 3.217100e-04	ci right 3.569092e-04	k: 1444	n:4260000
Cons ci ratio: 1.387148e-03	ci left: 6.516773e-01	ci right 6.525821e-01	k: 2778073	n:4260000
KS ci ratio: 1.326583e-01	ci left: 1.913336e-04	ci right 2.187429e-04	k: 872	n:4260000
UBAP2L   4260000 perm   6948 sec   (613 perm/sec)   p_kst 2.046948e-04   p_cons 6.521298e-01   p_joint 3.389671e-04

Joint ci ratio: 1.029623e-01	ci left: 3.218692e-04	ci right 3.570343e-04	k: 1448	n:4270000
Cons ci ratio: 1.385546e-03	ci left: 6.516700e-01	ci right 6.525738e-01	k: 2784561	n:4270000
KS ci ratio: 1.325066e-01	ci left: 1.913384e-04	ci right 2.187146e-04	k: 874	n:4270000
UBAP2L   4270000 perm   6979 sec   (612 perm/sec)   p_kst 2.046838e-04   p_cons 6.521220e-01   p_joint 3.391101e-04

Joint ci ratio: 1.028559e-01	ci left: 3.218001e-04	ci right 3.569191e-04	k: 1451	n:4280000
Cons ci ratio: 1.383943e-03	ci left: 6.516654e-01	ci right 6.525681e-01	k: 2791060	n:4280000
KS ci ratio: 1.323554e-01	ci left: 1.913431e-04	ci right 2.186863e-04	k: 876	n:4280000
UBAP2L   4280000 perm   7010 sec   (611 perm/sec)   p_kst 2.046729e-04   p_cons 6.521168e-01   p_joint 3.390187e-04

Joint ci ratio: 1.027145e-01	ci left: 3.219584e-04	ci right 3.570434e-04	k: 1455	n:4290000
Cons ci ratio: 1.382283e-03	ci left: 6.516808e-01	ci right 6.525824e-01	k: 2797645	n:4290000
KS ci ratio: 1.322048e-01	ci left: 1.913479e-04	ci right 2.186582e-04	k: 878	n:4290000
UBAP2L   4290000 perm   7042 sec   (609 perm/sec)   p_kst 2.046620e-04   p_cons 6.521317e-01   p_joint 3.391608e-04

Joint ci ratio: 1.026440e-01	ci left: 3.216628e-04	ci right 3.566902e-04	k: 1457	n:4300000
Cons ci ratio: 1.380617e-03	ci left: 6.517003e-01	ci right 6.526009e-01	k: 2804248	n:4300000
KS ci ratio: 1.321296e-01	ci left: 1.911278e-04	ci right 2.183899e-04	k: 879	n:4300000
UBAP2L   4300000 perm   7073 sec   (608 perm/sec)   p_kst 2.044186e-04   p_cons 6.521507e-01   p_joint 3.388372e-04

Joint ci ratio: 1.025035e-01	ci left: 3.218208e-04	ci right 3.568145e-04	k: 1461	n:4310000
Cons ci ratio: 1.379040e-03	ci left: 6.516926e-01	ci right 6.525921e-01	k: 2810734	n:4310000
KS ci ratio: 1.319050e-01	ci left: 1.913574e-04	ci right 2.186022e-04	k: 882	n:4310000
UBAP2L   4310000 perm   7103 sec   (607 perm/sec)   p_kst 2.046404e-04   p_cons 6.521425e-01   p_joint 3.389791e-04

Joint ci ratio: 1.023635e-01	ci left: 3.219780e-04	ci right 3.569381e-04	k: 1465	n:4320000
Cons ci ratio: 1.377389e-03	ci left: 6.517108e-01	ci right 6.526093e-01	k: 2817332	n:4320000
KS ci ratio: 1.316072e-01	ci left: 1.918098e-04	ci right 2.190526e-04	k: 886	n:4320000
UBAP2L   4320000 perm   7135 sec   (606 perm/sec)   p_kst 2.050926e-04   p_cons 6.521602e-01   p_joint 3.391204e-04

Joint ci ratio: 1.022590e-01	ci left: 3.219095e-04	ci right 3.568244e-04	k: 1468	n:4330000
Cons ci ratio: 1.375809e-03	ci left: 6.517078e-01	ci right 6.526052e-01	k: 2823838	n:4330000
KS ci ratio: 1.314591e-01	ci left: 1.918135e-04	ci right 2.190238e-04	k: 888	n:4330000
UBAP2L   4330000 perm   7166 sec   (604 perm/sec)   p_kst 2.050808e-04   p_cons 6.521566e-01   p_joint 3.390300e-04

Joint ci ratio: 1.021895e-01	ci left: 3.216169e-04	ci right 3.564748e-04	k: 1470	n:4340000
Cons ci ratio: 1.374267e-03	ci left: 6.516936e-01	ci right 6.525900e-01	k: 2830296	n:4340000
KS ci ratio: 1.313852e-01	ci left: 1.915944e-04	ci right 2.187572e-04	k: 889	n:4340000
UBAP2L   4340000 perm   7197 sec   (603 perm/sec)   p_kst 2.048387e-04   p_cons 6.521419e-01   p_joint 3.387097e-04

Joint ci ratio: 1.021201e-01	ci left: 3.213255e-04	ci right 3.561268e-04	k: 1472	n:4350000
Cons ci ratio: 1.372639e-03	ci left: 6.517097e-01	ci right 6.526051e-01	k: 2836885	n:4350000
KS ci ratio: 1.313115e-01	ci left: 1.913763e-04	ci right 2.184917e-04	k: 890	n:4350000
UBAP2L   4350000 perm   7228 sec   (602 perm/sec)   p_kst 2.045977e-04   p_cons 6.521575e-01   p_joint 3.383908e-04

Joint ci ratio: 1.020508e-01	ci left: 3.210356e-04	ci right 3.557804e-04	k: 1474	n:4360000
Cons ci ratio: 1.370981e-03	ci left: 6.517378e-01	ci right 6.526322e-01	k: 2843527	n:4360000
KS ci ratio: 1.313115e-01	ci left: 1.909374e-04	ci right 2.179906e-04	k: 890	n:4360000
UBAP2L   4360000 perm   7260 sec   (601 perm/sec)   p_kst 2.041284e-04   p_cons 6.521851e-01   p_joint 3.380734e-04

Joint ci ratio: 1.020163e-01	ci left: 3.205239e-04	ci right 3.552010e-04	k: 1475	n:4370000
Cons ci ratio: 1.369399e-03	ci left: 6.517425e-01	ci right 6.526358e-01	k: 2850067	n:4370000
KS ci ratio: 1.313115e-01	ci left: 1.905004e-04	ci right 2.174917e-04	k: 890	n:4370000
UBAP2L   4370000 perm   7291 sec   (599 perm/sec)   p_kst 2.036613e-04   p_cons 6.521892e-01   p_joint 3.375286e-04

Joint ci ratio: 1.019128e-01	ci left: 3.204596e-04	ci right 3.550924e-04	k: 1478	n:4380000
Cons ci ratio: 1.367784e-03	ci left: 6.517597e-01	ci right 6.526520e-01	k: 2856662	n:4380000
KS ci ratio: 1.311644e-01	ci left: 1.905071e-04	ci right 2.174668e-04	k: 892	n:4380000
UBAP2L   4380000 perm   7323 sec   (598 perm/sec)   p_kst 2.036530e-04   p_cons 6.522059e-01   p_joint 3.374429e-04

Joint ci ratio: 1.018784e-01	ci left: 3.199516e-04	ci right 3.545171e-04	k: 1479	n:4390000
Cons ci ratio: 1.366211e-03	ci left: 6.517652e-01	ci right 6.526565e-01	k: 2863206	n:4390000
KS ci ratio: 1.310910e-01	ci left: 1.902935e-04	ci right 2.172067e-04	k: 893	n:4390000
UBAP2L   4390000 perm   7354 sec   (597 perm/sec)   p_kst 2.034169e-04   p_cons 6.522109e-01   p_joint 3.369021e-04

Joint ci ratio: 1.017753e-01	ci left: 3.198889e-04	ci right 3.544106e-04	k: 1482	n:4400000
Cons ci ratio: 1.364629e-03	ci left: 6.517752e-01	ci right 6.526655e-01	k: 2869770	n:4400000
KS ci ratio: 1.310178e-01	ci left: 1.900808e-04	ci right 2.169478e-04	k: 894	n:4400000
UBAP2L   4400000 perm   7386 sec   (596 perm/sec)   p_kst 2.031818e-04   p_cons 6.522205e-01   p_joint 3.368182e-04

Joint ci ratio: 1.017067e-01	ci left: 3.196055e-04	ci right 3.540720e-04	k: 1484	n:4410000
Cons ci ratio: 1.363025e-03	ci left: 6.517941e-01	ci right 6.526833e-01	k: 2876373	n:4410000
KS ci ratio: 1.309447e-01	ci left: 1.898691e-04	ci right 2.166900e-04	k: 895	n:4410000
UBAP2L   4410000 perm   7418 sec   (595 perm/sec)   p_kst 2.029478e-04   p_cons 6.522388e-01   p_joint 3.365079e-04

Joint ci ratio: 1.014678e-01	ci left: 3.204259e-04	ci right 3.548949e-04	k: 1491	n:4420000
Cons ci ratio: 1.361533e-03	ci left: 6.517777e-01	ci right 6.526660e-01	k: 2882821	n:4420000
KS ci ratio: 1.306533e-01	ci left: 1.903149e-04	ci right 2.171343e-04	k: 899	n:4420000
UBAP2L   4420000 perm   7449 sec   (593 perm/sec)   p_kst 2.033937e-04   p_cons 6.522219e-01   p_joint 3.373303e-04

Joint ci ratio: 1.013321e-01	ci left: 3.205826e-04	ci right 3.550196e-04	k: 1495	n:4430000
Cons ci ratio: 1.359997e-03	ci left: 6.517777e-01	ci right 6.526650e-01	k: 2889341	n:4430000
KS ci ratio: 1.304361e-01	ci left: 1.905404e-04	ci right 2.173435e-04	k: 902	n:4430000
UBAP2L   4430000 perm   7481 sec   (592 perm/sec)   p_kst 2.036117e-04   p_cons 6.522214e-01   p_joint 3.374718e-04

Joint ci ratio: 1.011631e-01	ci left: 3.209582e-04	ci right 3.553746e-04	k: 1500	n:4440000
Cons ci ratio: 1.358457e-03	ci left: 6.517809e-01	ci right 6.526671e-01	k: 2895875	n:4440000
KS ci ratio: 1.301482e-01	ci left: 1.909828e-04	ci right 2.177842e-04	k: 906	n:4440000
UBAP2L   4440000 perm   7513 sec   (591 perm/sec)   p_kst 2.040541e-04   p_cons 6.522241e-01   p_joint 3.378378e-04

Joint ci ratio: 1.011295e-01	ci left: 3.204560e-04	ci right 3.548064e-04	k: 1501	n:4450000
Cons ci ratio: 1.356905e-03	ci left: 6.517896e-01	ci right 6.526749e-01	k: 2902434	n:4450000
KS ci ratio: 1.301482e-01	ci left: 1.905536e-04	ci right 2.172948e-04	k: 906	n:4450000
UBAP2L   4450000 perm   7545 sec   (590 perm/sec)   p_kst 2.035955e-04   p_cons 6.522324e-01   p_joint 3.373034e-04

Joint ci ratio: 1.010286e-01	ci left: 3.203931e-04	ci right 3.547005e-04	k: 1504	n:4460000
Cons ci ratio: 1.355396e-03	ci left: 6.517858e-01	ci right 6.526700e-01	k: 2908937	n:4460000
KS ci ratio: 1.300765e-01	ci left: 1.903433e-04	ci right 2.170391e-04	k: 907	n:4460000
UBAP2L   4460000 perm   7577 sec   (589 perm/sec)   p_kst 2.033632e-04   p_cons 6.522280e-01   p_joint 3.372197e-04

Joint ci ratio: 1.028212e-01	ci left: 3.083396e-04	ci right 3.419776e-04	k: 1452	n:4470000
Cons ci ratio: 1.353858e-03	ci left: 6.517932e-01	ci right 6.526764e-01	k: 2915490	n:4470000
KS ci ratio: 1.297198e-01	ci left: 1.909997e-04	ci right 2.177085e-04	k: 912	n:4470000
UBAP2L   4470000 perm   7609 sec   (587 perm/sec)   p_kst 2.040268e-04   p_cons 6.522349e-01   p_joint 3.248322e-04

Joint ci ratio: 1.027858e-01	ci left: 3.078688e-04	ci right 3.414432e-04	k: 1453	n:4480000
Cons ci ratio: 1.352296e-03	ci left: 6.518106e-01	ci right 6.526928e-01	k: 2922088	n:4480000
KS ci ratio: 1.296488e-01	ci left: 1.907893e-04	ci right 2.174530e-04	k: 913	n:4480000
UBAP2L   4480000 perm   7641 sec   (586 perm/sec)   p_kst 2.037946e-04   p_cons 6.522518e-01   p_joint 3.243304e-04

Joint ci ratio: 1.026800e-01	ci left: 3.078342e-04	ci right 3.413681e-04	k: 1456	n:4490000
Cons ci ratio: 1.350804e-03	ci left: 6.518063e-01	ci right 6.526875e-01	k: 2928589	n:4490000
KS ci ratio: 1.295780e-01	ci left: 1.905799e-04	ci right 2.171986e-04	k: 914	n:4490000
UBAP2L   4490000 perm   7673 sec   (585 perm/sec)   p_kst 2.035635e-04   p_cons 6.522470e-01   p_joint 3.242762e-04

Joint ci ratio: 1.025744e-01	ci left: 3.077996e-04	ci right 3.412932e-04	k: 1459	n:4500000
Cons ci ratio: 1.349296e-03	ci left: 6.518086e-01	ci right 6.526889e-01	k: 2935120	n:4500000
KS ci ratio: 1.295072e-01	ci left: 1.903714e-04	ci right 2.169453e-04	k: 915	n:4500000
UBAP2L   4500000 perm   7706 sec   (584 perm/sec)   p_kst 2.033333e-04   p_cons 6.522489e-01   p_joint 3.242222e-04

Joint ci ratio: 1.023992e-01	ci left: 3.081974e-04	ci right 3.416736e-04	k: 1464	n:4510000
Cons ci ratio: 1.347785e-03	ci left: 6.518139e-01	ci right 6.526932e-01	k: 2941664	n:4510000
KS ci ratio: 1.292957e-01	ci left: 1.905930e-04	ci right 2.171510e-04	k: 918	n:4510000
UBAP2L   4510000 perm   7740 sec   (583 perm/sec)   p_kst 2.035477e-04   p_cons 6.522537e-01   p_joint 3.246120e-04

Joint ci ratio: 1.022249e-01	ci left: 3.085934e-04	ci right 3.420521e-04	k: 1469	n:4520000
Cons ci ratio: 1.346307e-03	ci left: 6.518099e-01	ci right 6.526882e-01	k: 2948166	n:4520000
KS ci ratio: 1.289453e-01	ci left: 1.912418e-04	ci right 2.178125e-04	k: 923	n:4520000
UBAP2L   4520000 perm   7777 sec   (581 perm/sec)   p_kst 2.042035e-04   p_cons 6.522491e-01   p_joint 3.250000e-04

Joint ci ratio: 1.020515e-01	ci left: 3.089878e-04	ci right 3.424290e-04	k: 1474	n:4530000
Cons ci ratio: 1.344790e-03	ci left: 6.518206e-01	ci right 6.526980e-01	k: 2954735	n:4530000
KS ci ratio: 1.286671e-01	ci left: 1.916741e-04	ci right 2.182431e-04	k: 927	n:4530000
UBAP2L   4530000 perm   7815 sec   (580 perm/sec)   p_kst 2.046358e-04   p_cons 6.522594e-01   p_joint 3.253863e-04

Joint ci ratio: 1.018789e-01	ci left: 3.093804e-04	ci right 3.428041e-04	k: 1479	n:4540000
Cons ci ratio: 1.343289e-03	ci left: 6.518273e-01	ci right 6.527037e-01	k: 2961286	n:4540000
KS ci ratio: 1.285287e-01	ci left: 1.916783e-04	ci right 2.182171e-04	k: 929	n:4540000
UBAP2L   4540000 perm   7852 sec   (578 perm/sec)   p_kst 2.046256e-04   p_cons 6.522656e-01   p_joint 3.257709e-04

Joint ci ratio: 1.018102e-01	ci left: 3.091288e-04	ci right 3.425015e-04	k: 1481	n:4550000
Cons ci ratio: 1.341802e-03	ci left: 6.518314e-01	ci right 6.527068e-01	k: 2967825	n:4550000
KS ci ratio: 1.284597e-01	ci left: 1.914698e-04	ci right 2.179643e-04	k: 930	n:4550000
UBAP2L   4550000 perm   7889 sec   (577 perm/sec)   p_kst 2.043956e-04   p_cons 6.522692e-01   p_joint 3.254945e-04

Joint ci ratio: 1.017073e-01	ci left: 3.090921e-04	ci right 3.424250e-04	k: 1484	n:4560000
Cons ci ratio: 1.340284e-03	ci left: 6.518475e-01	ci right 6.527220e-01	k: 2974419	n:4560000
KS ci ratio: 1.283219e-01	ci left: 1.914744e-04	ci right 2.179390e-04	k: 932	n:4560000
UBAP2L   4560000 perm   7927 sec   (575 perm/sec)   p_kst 2.043860e-04   p_cons 6.522849e-01   p_joint 3.254386e-04

Joint ci ratio: 1.015706e-01	ci left: 3.092687e-04	ci right 3.425732e-04	k: 1488	n:4570000
Cons ci ratio: 1.338846e-03	ci left: 6.518380e-01	ci right 6.527115e-01	k: 2980896	n:4570000
KS ci ratio: 1.281846e-01	ci left: 1.914790e-04	ci right 2.179138e-04	k: 934	n:4570000
UBAP2L   4570000 perm   7963 sec   (574 perm/sec)   p_kst 2.043764e-04   p_cons 6.522748e-01   p_joint 3.256018e-04

Joint ci ratio: 1.014004e-01	ci left: 3.096575e-04	ci right 3.429446e-04	k: 1493	n:4580000
Cons ci ratio: 1.337422e-03	ci left: 6.518254e-01	ci right 6.526980e-01	k: 2987359	n:4580000
KS ci ratio: 1.279112e-01	ci left: 1.919063e-04	ci right 2.183393e-04	k: 938	n:4580000
UBAP2L   4580000 perm   7996 sec   (573 perm/sec)   p_kst 2.048035e-04   p_cons 6.522618e-01   p_joint 3.259825e-04

Joint ci ratio: 1.011974e-01	ci left: 3.102569e-04	ci right 3.435378e-04	k: 1499	n:4590000
Cons ci ratio: 1.335954e-03	ci left: 6.518295e-01	ci right 6.527011e-01	k: 2993898	n:4590000
KS ci ratio: 1.275720e-01	ci left: 1.925427e-04	ci right 2.189877e-04	k: 943	n:4590000
UBAP2L   4590000 perm   8029 sec   (572 perm/sec)   p_kst 2.054466e-04   p_cons 6.522654e-01   p_joint 3.265795e-04

Joint ci ratio: 1.011300e-01	ci left: 3.100062e-04	ci right 3.432367e-04	k: 1501	n:4600000
Cons ci ratio: 1.334477e-03	ci left: 6.518381e-01	ci right 6.527087e-01	k: 3000458	n:4600000
KS ci ratio: 1.275045e-01	ci left: 1.923346e-04	ci right 2.187360e-04	k: 944	n:4600000
UBAP2L   4600000 perm   8065 sec   (570 perm/sec)   p_kst 2.052174e-04   p_cons 6.522735e-01   p_joint 3.263043e-04

Joint ci ratio: 1.010964e-01	ci left: 3.095452e-04	ci right 3.427146e-04	k: 1502	n:4610000
Cons ci ratio: 1.333012e-03	ci left: 6.518444e-01	ci right 6.527141e-01	k: 3007008	n:4610000
KS ci ratio: 1.275045e-01	ci left: 1.919174e-04	ci right 2.182615e-04	k: 944	n:4610000
UBAP2L   4610000 perm   8103 sec   (569 perm/sec)   p_kst 2.047722e-04   p_cons 6.522794e-01   p_joint 3.258134e-04

Joint ci ratio: 1.010628e-01	ci left: 3.090862e-04	ci right 3.421947e-04	k: 1503	n:4620000
Cons ci ratio: 1.331572e-03	ci left: 6.518437e-01	ci right 6.527124e-01	k: 3013525	n:4620000
KS ci ratio: 1.275046e-01	ci left: 1.915020e-04	ci right 2.177891e-04	k: 944	n:4620000
UBAP2L   4620000 perm   8141 sec   (568 perm/sec)   p_kst 2.043290e-04   p_cons 6.522781e-01   p_joint 3.253247e-04

Joint ci ratio: 1.008952e-01	ci left: 3.094712e-04	ci right 3.425628e-04	k: 1508	n:4630000
Cons ci ratio: 1.330192e-03	ci left: 6.518241e-01	ci right 6.526919e-01	k: 3019955	n:4630000
KS ci ratio: 1.272355e-01	ci left: 1.919248e-04	ci right 2.182102e-04	k: 948	n:4630000
UBAP2L   4630000 perm   8176 sec   (566 perm/sec)   p_kst 2.047516e-04   p_cons 6.522581e-01   p_joint 3.257019e-04

Joint ci ratio: 1.008284e-01	ci left: 3.092244e-04	ci right 3.422664e-04	k: 1510	n:4640000
Cons ci ratio: 1.328755e-03	ci left: 6.518253e-01	ci right 6.526922e-01	k: 3026481	n:4640000
KS ci ratio: 1.271686e-01	ci left: 1.917198e-04	ci right 2.179623e-04	k: 949	n:4640000
UBAP2L   4640000 perm   8210 sec   (565 perm/sec)   p_kst 2.045259e-04   p_cons 6.522588e-01   p_joint 3.254310e-04

Joint ci ratio: 1.007618e-01	ci left: 3.089787e-04	ci right 3.419713e-04	k: 1512	n:4650000
Cons ci ratio: 1.327273e-03	ci left: 6.518439e-01	ci right 6.527099e-01	k: 3033088	n:4650000
KS ci ratio: 1.271017e-01	ci left: 1.915157e-04	ci right 2.177154e-04	k: 950	n:4650000
UBAP2L   4650000 perm   8243 sec   (564 perm/sec)   p_kst 2.043011e-04   p_cons 6.522770e-01   p_joint 3.251613e-04

Joint ci ratio: 1.006289e-01	ci left: 3.091524e-04	ci right 3.421175e-04	k: 1516	n:4660000
Cons ci ratio: 1.325892e-03	ci left: 6.518294e-01	ci right 6.526944e-01	k: 3039541	n:4660000
KS ci ratio: 1.269683e-01	ci left: 1.915203e-04	ci right 2.176910e-04	k: 952	n:4660000
UBAP2L   4660000 perm   8277 sec   (563 perm/sec)   p_kst 2.042918e-04   p_cons 6.522620e-01   p_joint 3.253219e-04

Joint ci ratio: 1.004964e-01	ci left: 3.093254e-04	ci right 3.422629e-04	k: 1520	n:4670000
Cons ci ratio: 1.324512e-03	ci left: 6.518160e-01	ci right 6.526801e-01	k: 3045999	n:4670000
KS ci ratio: 1.268352e-01	ci left: 1.915249e-04	ci right 2.176667e-04	k: 954	n:4670000
UBAP2L   4670000 perm   8313 sec   (562 perm/sec)   p_kst 2.042827e-04   p_cons 6.522482e-01   p_joint 3.254818e-04

Joint ci ratio: 1.003975e-01	ci left: 3.092894e-04	ci right 3.421887e-04	k: 1523	n:4680000
Cons ci ratio: 1.323106e-03	ci left: 6.518132e-01	ci right 6.526764e-01	k: 3052506	n:4680000
KS ci ratio: 1.266365e-01	ci left: 1.917363e-04	ci right 2.178630e-04	k: 957	n:4680000
UBAP2L   4680000 perm   8352 sec   (560 perm/sec)   p_kst 2.044872e-04   p_cons 6.522449e-01   p_joint 3.254274e-04

Joint ci ratio: 1.002332e-01	ci left: 3.096692e-04	ci right 3.425519e-04	k: 1528	n:4690000
Cons ci ratio: 1.321719e-03	ci left: 6.518052e-01	ci right 6.526675e-01	k: 3058989	n:4690000
KS ci ratio: 1.264386e-01	ci left: 1.919469e-04	ci right 2.180583e-04	k: 960	n:4690000
UBAP2L   4690000 perm   8390 sec   (559 perm/sec)   p_kst 2.046908e-04   p_cons 6.522365e-01   p_joint 3.257996e-04

Joint ci ratio: 1.001023e-01	ci left: 3.098401e-04	ci right 3.426955e-04	k: 1532	n:4700000
Cons ci ratio: 1.320302e-03	ci left: 6.518090e-01	ci right 6.526704e-01	k: 3065527	n:4700000
KS ci ratio: 1.263073e-01	ci left: 1.919506e-04	ci right 2.180334e-04	k: 962	n:4700000
UBAP2L   4700000 perm   8429 sec   (558 perm/sec)   p_kst 2.046809e-04   p_cons 6.522398e-01   p_joint 3.259574e-04

Joint ci ratio: 1.000045e-01	ci left: 3.098033e-04	ci right 3.426208e-04	k: 1535	n:4710000
Cons ci ratio: 1.318874e-03	ci left: 6.518185e-01	ci right 6.526790e-01	k: 3072092	n:4710000
KS ci ratio: 1.261110e-01	ci left: 1.921599e-04	ci right 2.182275e-04	k: 965	n:4710000
UBAP2L   4710000 perm   8467 sec   (556 perm/sec)   p_kst 2.048832e-04   p_cons 6.522488e-01   p_joint 3.259023e-04

Joint ci ratio: 9.997200e-02	ci left: 3.093535e-04	ci right 3.421120e-04	k: 1536	n:4720000
Cons ci ratio: 1.317466e-03	ci left: 6.518225e-01	ci right 6.526820e-01	k: 3078631	n:4720000
KS ci ratio: 1.261110e-01	ci left: 1.917528e-04	ci right 2.177651e-04	k: 965	n:4720000
UBAP2L   4720000 perm   8506 sec   (555 perm/sec)   p_kst 2.044492e-04   p_cons 6.522523e-01   p_joint 3.254237e-04

Joint ci ratio: 9.984215e-02	ci left: 3.095240e-04	ci right 3.422555e-04	k: 1540	n:4730000
Cons ci ratio: 1.316054e-03	ci left: 6.518294e-01	ci right 6.526880e-01	k: 3085184	n:4730000
KS ci ratio: 1.259807e-01	ci left: 1.917569e-04	ci right 2.177409e-04	k: 967	n:4730000
UBAP2L   4730000 perm   8541 sec   (554 perm/sec)   p_kst 2.044397e-04   p_cons 6.522588e-01   p_joint 3.255814e-04

Joint ci ratio: 9.968055e-02	ci left: 3.098995e-04	ci right 3.426146e-04	k: 1545	n:4740000
Cons ci ratio: 1.314651e-03	ci left: 6.518346e-01	ci right 6.526923e-01	k: 3091729	n:4740000
KS ci ratio: 1.257859e-01	ci left: 1.919653e-04	ci right 2.179344e-04	k: 970	n:4740000
UBAP2L   4740000 perm   8579 sec   (553 perm/sec)   p_kst 2.046414e-04   p_cons 6.522635e-01   p_joint 3.259494e-04

Joint ci ratio: 9.955184e-02	ci left: 3.100682e-04	ci right 3.427564e-04	k: 1549	n:4750000
Cons ci ratio: 1.313300e-03	ci left: 6.518233e-01	ci right 6.526801e-01	k: 3098196	n:4750000
KS ci ratio: 1.255276e-01	ci left: 1.923768e-04	ci right 2.183441e-04	k: 974	n:4750000
UBAP2L   4750000 perm   8618 sec   (551 perm/sec)   p_kst 2.050526e-04   p_cons 6.522518e-01   p_joint 3.261053e-04

Joint ci ratio: 9.942363e-02	ci left: 3.102363e-04	ci right 3.428976e-04	k: 1553	n:4760000
Cons ci ratio: 1.311959e-03	ci left: 6.518102e-01	ci right 6.526661e-01	k: 3104654	n:4760000
KS ci ratio: 1.253990e-01	ci left: 1.923796e-04	ci right 2.183188e-04	k: 976	n:4760000
UBAP2L   4760000 perm   8657 sec   (550 perm/sec)   p_kst 2.050420e-04   p_cons 6.522382e-01   p_joint 3.262605e-04

Joint ci ratio: 9.932780e-02	ci left: 3.101992e-04	ci right 3.428233e-04	k: 1556	n:4770000
Cons ci ratio: 1.310589e-03	ci left: 6.518087e-01	ci right 6.526637e-01	k: 3111167	n:4770000
KS ci ratio: 1.252709e-01	ci left: 1.923825e-04	ci right 2.182935e-04	k: 978	n:4770000
UBAP2L   4770000 perm   8697 sec   (548 perm/sec)   p_kst 2.050314e-04   p_cons 6.522363e-01   p_joint 3.262055e-04

Joint ci ratio: 9.910523e-02	ci left: 3.109783e-04	ci right 3.436068e-04	k: 1563	n:4780000
Cons ci ratio: 1.309252e-03	ci left: 6.517969e-01	ci right 6.526510e-01	k: 3117631	n:4780000
KS ci ratio: 1.248887e-01	ci left: 1.931960e-04	ci right 2.191313e-04	k: 984	n:4780000
UBAP2L   4780000 perm   8734 sec   (547 perm/sec)   p_kst 2.058577e-04   p_cons 6.522241e-01   p_joint 3.269874e-04

Joint ci ratio: 9.897873e-02	ci left: 3.111435e-04	ci right 3.437452e-04	k: 1567	n:4790000
Cons ci ratio: 1.307891e-03	ci left: 6.517952e-01	ci right 6.526484e-01	k: 3124143	n:4790000
KS ci ratio: 1.248254e-01	ci left: 1.929949e-04	ci right 2.188891e-04	k: 985	n:4790000
UBAP2L   4790000 perm   8768 sec   (546 perm/sec)   p_kst 2.056367e-04   p_cons 6.522219e-01   p_joint 3.271399e-04

Joint ci ratio: 9.882128e-02	ci left: 3.115112e-04	ci right 3.440965e-04	k: 1572	n:4800000
Cons ci ratio: 1.306540e-03	ci left: 6.517917e-01	ci right 6.526440e-01	k: 3130646	n:4800000
KS ci ratio: 1.246359e-01	ci left: 1.931983e-04	ci right 2.190776e-04	k: 988	n:4800000
UBAP2L   4800000 perm   8806 sec   (545 perm/sec)   p_kst 2.058333e-04   p_cons 6.522179e-01   p_joint 3.275000e-04

Joint ci ratio: 9.866458e-02	ci left: 3.118774e-04	ci right 3.444463e-04	k: 1577	n:4810000
Cons ci ratio: 1.305150e-03	ci left: 6.518029e-01	ci right 6.526543e-01	k: 3137220	n:4810000
KS ci ratio: 1.243846e-01	ci left: 1.936023e-04	ci right 2.194796e-04	k: 992	n:4810000
UBAP2L   4810000 perm   8844 sec   (544 perm/sec)   p_kst 2.062370e-04   p_cons 6.522287e-01   p_joint 3.278586e-04

Joint ci ratio: 9.857093e-02	ci left: 3.118374e-04	ci right 3.443694e-04	k: 1580	n:4820000
Cons ci ratio: 1.303795e-03	ci left: 6.518033e-01	ci right 6.526538e-01	k: 3143742	n:4820000
KS ci ratio: 1.241971e-01	ci left: 1.938037e-04	ci right 2.196660e-04	k: 995	n:4820000
UBAP2L   4820000 perm   8882 sec   (543 perm/sec)   p_kst 2.064315e-04   p_cons 6.522286e-01   p_joint 3.278008e-04

Joint ci ratio: 9.850865e-02	ci left: 3.115956e-04	ci right 3.440807e-04	k: 1582	n:4830000
Cons ci ratio: 1.302411e-03	ci left: 6.518157e-01	ci right 6.526653e-01	k: 3150322	n:4830000
KS ci ratio: 1.240726e-01	ci left: 1.938037e-04	ci right 2.196381e-04	k: 997	n:4830000
UBAP2L   4830000 perm   8917 sec   (542 perm/sec)   p_kst 2.064182e-04   p_cons 6.522406e-01   p_joint 3.275362e-04

Joint ci ratio: 9.835343e-02	ci left: 3.119595e-04	ci right 3.444283e-04	k: 1587	n:4840000
Cons ci ratio: 1.301038e-03	ci left: 6.518255e-01	ci right 6.526743e-01	k: 3156890	n:4840000
KS ci ratio: 1.239485e-01	ci left: 1.938037e-04	ci right 2.196104e-04	k: 999	n:4840000
UBAP2L   4840000 perm   8956 sec   (540 perm/sec)   p_kst 2.064050e-04   p_cons 6.522500e-01   p_joint 3.278926e-04

Joint ci ratio: 9.832250e-02	ci left: 3.115174e-04	ci right 3.439294e-04	k: 1588	n:4850000
Cons ci ratio: 1.299695e-03	ci left: 6.518263e-01	ci right 6.526742e-01	k: 3163414	n:4850000
KS ci ratio: 1.238866e-01	ci left: 1.936039e-04	ci right 2.193701e-04	k: 1000	n:4850000
UBAP2L   4850000 perm   8995 sec   (539 perm/sec)   p_kst 2.061856e-04   p_cons 6.522503e-01   p_joint 3.274227e-04

Joint ci ratio: 9.819897e-02	ci left: 3.116792e-04	ci right 3.440650e-04	k: 1592	n:4860000
Cons ci ratio: 1.298380e-03	ci left: 6.518188e-01	ci right 6.526658e-01	k: 3169898	n:4860000
KS ci ratio: 1.237630e-01	ci left: 1.936043e-04	ci right 2.193430e-04	k: 1002	n:4860000
UBAP2L   4860000 perm   9034 sec   (538 perm/sec)   p_kst 2.061728e-04   p_cons 6.522424e-01   p_joint 3.275720e-04

Joint ci ratio: 9.813740e-02	ci left: 3.114398e-04	ci right 3.437793e-04	k: 1594	n:4870000
Cons ci ratio: 1.297035e-03	ci left: 6.518230e-01	ci right 6.526692e-01	k: 3176439	n:4870000
KS ci ratio: 1.237630e-01	ci left: 1.932067e-04	ci right 2.188926e-04	k: 1002	n:4870000
UBAP2L   4870000 perm   9074 sec   (537 perm/sec)   p_kst 2.057495e-04   p_cons 6.522462e-01   p_joint 3.273101e-04

Joint ci ratio: 9.807594e-02	ci left: 3.112014e-04	ci right 3.434947e-04	k: 1596	n:4880000
Cons ci ratio: 1.295661e-03	ci left: 6.518389e-01	ci right 6.526842e-01	k: 3183037	n:4880000
KS ci ratio: 1.237014e-01	ci left: 1.930094e-04	ci right 2.186553e-04	k: 1003	n:4880000
UBAP2L   4880000 perm   9109 sec   (536 perm/sec)   p_kst 2.055328e-04   p_cons 6.522617e-01   p_joint 3.270492e-04

Joint ci ratio: 9.786167e-02	ci left: 3.119614e-04	ci right 3.442588e-04	k: 1603	n:4890000
Cons ci ratio: 1.294310e-03	ci left: 6.518485e-01	ci right 6.526929e-01	k: 3189604	n:4890000
KS ci ratio: 1.234557e-01	ci left: 1.934074e-04	ci right 2.190514e-04	k: 1007	n:4890000
UBAP2L   4890000 perm   9144 sec   (535 perm/sec)   p_kst 2.059305e-04   p_cons 6.522708e-01   p_joint 3.278119e-04

Joint ci ratio: 9.777028e-02	ci left: 3.119220e-04	ci right 3.441834e-04	k: 1606	n:4900000
Cons ci ratio: 1.292982e-03	ci left: 6.518512e-01	ci right 6.526948e-01	k: 3196138	n:4900000
KS ci ratio: 1.233334e-01	ci left: 1.934083e-04	ci right 2.190252e-04	k: 1009	n:4900000
UBAP2L   4900000 perm   9179 sec   (534 perm/sec)   p_kst 2.059184e-04   p_cons 6.522731e-01   p_joint 3.277551e-04

Joint ci ratio: 9.764882e-02	ci left: 3.120815e-04	ci right 3.443170e-04	k: 1610	n:4910000
Cons ci ratio: 1.291627e-03	ci left: 6.518647e-01	ci right 6.527074e-01	k: 3202725	n:4910000
KS ci ratio: 1.232114e-01	ci left: 1.934091e-04	ci right 2.189990e-04	k: 1011	n:4910000
UBAP2L   4910000 perm   9219 sec   (533 perm/sec)   p_kst 2.059063e-04   p_cons 6.522862e-01   p_joint 3.279022e-04

Joint ci ratio: 9.749762e-02	ci left: 3.124387e-04	ci right 3.446582e-04	k: 1615	n:4920000
Cons ci ratio: 1.290373e-03	ci left: 6.518444e-01	ci right 6.526863e-01	k: 3209146	n:4920000
KS ci ratio: 1.229686e-01	ci left: 1.938040e-04	ci right 2.193919e-04	k: 1015	n:4920000
UBAP2L   4920000 perm   9259 sec   (531 perm/sec)   p_kst 2.063008e-04   p_cons 6.522654e-01   p_joint 3.282520e-04

Joint ci ratio: 9.746749e-02	ci left: 3.120028e-04	ci right 3.441669e-04	k: 1616	n:4930000
Cons ci ratio: 1.289036e-03	ci left: 6.518545e-01	ci right 6.526955e-01	k: 3215716	n:4930000
KS ci ratio: 1.229082e-01	ci left: 1.936075e-04	ci right 2.191559e-04	k: 1016	n:4930000
UBAP2L   4930000 perm   9300 sec   (530 perm/sec)   p_kst 2.060852e-04   p_cons 6.522751e-01   p_joint 3.277890e-04

Joint ci ratio: 9.740728e-02	ci left: 3.117662e-04	ci right 3.438849e-04	k: 1618	n:4940000
Cons ci ratio: 1.287705e-03	ci left: 6.518641e-01	ci right 6.527042e-01	k: 3222284	n:4940000
KS ci ratio: 1.228478e-01	ci left: 1.934118e-04	ci right 2.189209e-04	k: 1017	n:4940000
UBAP2L   4940000 perm   9340 sec   (529 perm/sec)   p_kst 2.058704e-04   p_cons 6.522842e-01   p_joint 3.275304e-04

Joint ci ratio: 9.731716e-02	ci left: 3.117277e-04	ci right 3.438110e-04	k: 1621	n:4950000
Cons ci ratio: 1.286461e-03	ci left: 6.518441e-01	ci right 6.526834e-01	k: 3228706	n:4950000
KS ci ratio: 1.227875e-01	ci left: 1.932169e-04	ci right 2.186869e-04	k: 1018	n:4950000
UBAP2L   4950000 perm   9380 sec   (528 perm/sec)   p_kst 2.056566e-04   p_cons 6.522638e-01   p_joint 3.274747e-04

Joint ci ratio: 9.725723e-02	ci left: 3.114926e-04	ci right 3.435309e-04	k: 1623	n:4960000
Cons ci ratio: 1.285179e-03	ci left: 6.518392e-01	ci right 6.526776e-01	k: 3235202	n:4960000
KS ci ratio: 1.227273e-01	ci left: 1.930227e-04	ci right 2.184538e-04	k: 1019	n:4960000
UBAP2L   4960000 perm   9421 sec   (526 perm/sec)   p_kst 2.054435e-04   p_cons 6.522585e-01   p_joint 3.272177e-04

Joint ci ratio: 9.722732e-02	ci left: 3.110622e-04	ci right 3.430458e-04	k: 1624	n:4970000
Cons ci ratio: 1.283925e-03	ci left: 6.518254e-01	ci right 6.526630e-01	k: 3241654	n:4970000
KS ci ratio: 1.227274e-01	ci left: 1.926344e-04	ci right 2.180143e-04	k: 1019	n:4970000
UBAP2L   4970000 perm   9460 sec   (525 perm/sec)   p_kst 2.050302e-04   p_cons 6.522443e-01   p_joint 3.267606e-04

Joint ci ratio: 9.713770e-02	ci left: 3.110253e-04	ci right 3.429740e-04	k: 1627	n:4980000
Cons ci ratio: 1.282647e-03	ci left: 6.518219e-01	ci right 6.526587e-01	k: 3248157	n:4980000
KS ci ratio: 1.226072e-01	ci left: 1.926368e-04	ci right 2.179904e-04	k: 1021	n:4980000
UBAP2L   4980000 perm   9502 sec   (524 perm/sec)   p_kst 2.050201e-04   p_cons 6.522404e-01   p_joint 3.267068e-04

Joint ci ratio: 9.704833e-02	ci left: 3.109886e-04	ci right 3.429025e-04	k: 1630	n:4990000
Cons ci ratio: 1.281401e-03	ci left: 6.518082e-01	ci right 6.526441e-01	k: 3254609	n:4990000
KS ci ratio: 1.225473e-01	ci left: 1.924450e-04	ci right 2.177601e-04	k: 1022	n:4990000
UBAP2L   4990000 perm   9543 sec   (523 perm/sec)   p_kst 2.048096e-04   p_cons 6.522263e-01   p_joint 3.266533e-04

Joint ci ratio: 9.625466e-02	ci left: 3.156362e-04	ci right 3.477471e-04	k: 1657	n:5000000
Cons ci ratio: 1.239559e-03	ci left: 6.662726e-01	ci right 6.670992e-01	k: 3333430	n:5000000
KS ci ratio: 1.224874e-01	ci left: 1.922540e-04	ci right 2.175307e-04	k: 1023	n:5000000
UBAP2L   5000000 perm   9584 sec   (522 perm/sec)   p_kst 2.046000e-04   p_cons 6.666860e-01   p_joint 3.314000e-04

Outputting figure to mutsig2_images.part000000000185/UBAP2L.4_3422_5000000_0.0002046_0.66669_0.0003314.png
                gene_name: UBAP2L
               theta_stop: 0.12 
                    nperm: 5000000 
                     p_ks: 0.00020 
        ci_ks_bounds_left: 0.00019 
       ci_ks_bounds_right: 0.00022 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.00033 
     ci_joint_bounds_left: 0.00032 
    ci_joint_bounds_right: 0.00035 

Current progress: 22 percent done.
UBE2O
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.885105e-02	ci left: 6.391508e-01	ci right 6.579626e-01	k: 6486	n:10000
KS ci ratio: 6.364973e-03	ci left: 9.711128e-01	ci right 9.774068e-01	k: 9744	n:10000
UBE2O   10000 perm   2 sec   (5132 perm/sec)   p_kst 9.744000e-01   p_cons 6.486000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000185/UBE2O.4_3951_10000_0.9744_0.6486_1.png
                gene_name: UBE2O
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 25 percent done.
UBE3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.915495e-02	ci left: 4.906512e-01	ci right 5.103485e-01	k: 5005	n:10000
KS ci ratio: 1.648225e-02	ci left: 8.426459e-01	ci right 8.567497e-01	k: 8498	n:10000
UBE3B   10000 perm   2 sec   (5653 perm/sec)   p_kst 8.498000e-01   p_cons 5.005000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000185/UBE3B.4_3311_10000_0.8498_0.5005_1.png
                gene_name: UBE3B
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 28 percent done.
UBN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.007201e-02	ci left: 3.703732e-01	ci right 3.894968e-01	k: 3799	n:10000
Cons ci ratio: 1.208232e-02	ci left: 9.076136e-01	ci right 9.187443e-01	k: 9133	n:10000
KS ci ratio: 8.679855e-02	ci left: 1.619969e-01	ci right 1.767962e-01	k: 1693	n:10000
UBN1   10000 perm   2 sec   (5587 perm/sec)   p_kst 1.693000e-01   p_cons 9.133000e-01   p_joint 3.799000e-01

Outputting figure to mutsig2_images.part000000000185/UBN1.4_3473_10000_0.1693_0.9133_0.3799.png
                gene_name: UBN1
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 31 percent done.
TXNRD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.539269e-01	ci left: 5.619485e-02	ci right 6.566293e-02	k: 608	n:10000
Cons ci ratio: 8.429399e-02	ci left: 1.702525e-01	ci right 1.853357e-01	k: 1777	n:10000
KS ci ratio: 2.013935e-01	ci left: 3.281488e-02	ci right 4.025825e-02	k: 364	n:10000
TXNRD2   10000 perm   2 sec   (6165 perm/sec)   p_kst 3.640000e-02   p_cons 1.777000e-01   p_joint 6.080000e-02

Joint ci ratio: 1.160707e-01	ci left: 5.081038e-02	ci right 5.712009e-02	k: 1078	n:20000
Cons ci ratio: 6.055015e-02	ci left: 1.679782e-01	ci right 1.785169e-01	k: 3464	n:20000
KS ci ratio: 1.419064e-01	ci left: 3.413670e-02	ci right 3.939908e-02	k: 734	n:20000
TXNRD2   20000 perm   4 sec   (5496 perm/sec)   p_kst 3.670000e-02   p_cons 1.732000e-01   p_joint 5.390000e-02

Joint ci ratio: 9.550719e-02	ci left: 5.062190e-02	ci right 5.573174e-02	k: 1594	n:30000
Cons ci ratio: 4.925879e-02	ci left: 1.699892e-01	ci right 1.786074e-01	k: 5228	n:30000
KS ci ratio: 1.158942e-01	ci left: 3.460064e-02	ci right 3.888967e-02	k: 1101	n:30000
TXNRD2   30000 perm   6 sec   (5241 perm/sec)   p_kst 3.670000e-02   p_cons 1.742667e-01   p_joint 5.313333e-02

Joint ci ratio: 8.332759e-02	ci left: 5.023634e-02	ci right 5.462892e-02	k: 2096	n:40000
Cons ci ratio: 4.268171e-02	ci left: 1.704200e-01	ci right 1.778774e-01	k: 6965	n:40000
KS ci ratio: 1.011686e-01	ci left: 3.434197e-02	ci right 3.802576e-02	k: 1446	n:40000
TXNRD2   40000 perm   8 sec   (5073 perm/sec)   p_kst 3.615000e-02   p_cons 1.741250e-01   p_joint 5.240000e-02

Joint ci ratio: 8.132868e-02	ci left: 4.259140e-02	ci right 4.622173e-02	k: 2219	n:50000
Cons ci ratio: 3.904338e-02	ci left: 1.644942e-01	ci right 1.710644e-01	k: 8388	n:50000
KS ci ratio: 9.024903e-02	ci left: 3.471669e-02	ci right 3.801742e-02	k: 1817	n:50000
TXNRD2   50000 perm   10 sec   (4939 perm/sec)   p_kst 3.634000e-02   p_cons 1.677600e-01   p_joint 4.438000e-02

Outputting figure to mutsig2_images.part000000000185/TXNRD2.3_1643_50000_0.03634_0.16776_0.04438.png
                gene_name: TXNRD2
               theta_stop: 0.090 
                    nperm: 50000 
                     p_ks: 0.036 
        ci_ks_bounds_left: 0.035 
       ci_ks_bounds_right: 0.038 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.044 
     ci_joint_bounds_left: 0.043 
    ci_joint_bounds_right: 0.046 

Current progress: 34 percent done.
TYROBP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.131434e-02	ci left: 6.007610e-01	ci right 6.199746e-01	k: 6104	n:10000
Cons ci ratio: 4.245605e-03	ci left: 9.862119e-01	ci right 9.904965e-01	k: 9885	n:10000
KS ci ratio: 4.839296e-02	ci left: 3.864955e-01	ci right 4.057650e-01	k: 3961	n:10000
TYROBP   10000 perm   1 sec   (6857 perm/sec)   p_kst 3.961000e-01   p_cons 9.885000e-01   p_joint 6.104000e-01

Outputting figure to mutsig2_images.part000000000185/TYROBP.3_362_10000_0.3961_0.9885_0.6104.png
                gene_name: TYROBP
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 38 percent done.
UACA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.482583e-02	ci left: 8.682565e-01	ci right 8.813243e-01	k: 8749	n:10000
KS ci ratio: 1.662397e-02	ci left: 8.404046e-01	ci right 8.545923e-01	k: 8476	n:10000
UACA   10000 perm   2 sec   (5135 perm/sec)   p_kst 8.476000e-01   p_cons 8.749000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000185/UACA.3_4370_10000_0.8476_0.8749_1.png
                gene_name: UACA
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 41 percent done.
UBA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.405162e-01	ci left: 6.710566e-02	ci right 7.734523e-02	k: 721	n:10000
Cons ci ratio: 8.636922e-02	ci left: 1.633724e-01	ci right 1.782199e-01	k: 1707	n:10000
KS ci ratio: 1.696151e-01	ci left: 4.638557e-02	ci right 5.507852e-02	k: 506	n:10000
UBA1   10000 perm   2 sec   (5517 perm/sec)   p_kst 5.060000e-02   p_cons 1.707000e-01   p_joint 7.210000e-02

Joint ci ratio: 8.478879e-02	ci left: 9.244163e-02	ci right 1.006761e-01	k: 1930	n:20000
Cons ci ratio: 6.315819e-02	ci left: 1.563751e-01	ci right 1.666235e-01	k: 3229	n:20000
KS ci ratio: 1.214604e-01	ci left: 4.648596e-02	ci right 5.254587e-02	k: 989	n:20000
UBA1   20000 perm   4 sec   (4940 perm/sec)   p_kst 4.945000e-02   p_cons 1.614500e-01   p_joint 9.650000e-02

Joint ci ratio: 1.126445e-01	ci left: 3.661037e-02	ci right 4.101285e-02	k: 1163	n:30000
Cons ci ratio: 4.950549e-02	ci left: 1.685699e-01	ci right 1.771602e-01	k: 5185	n:30000
KS ci ratio: 1.001342e-01	ci left: 4.616135e-02	ci right 5.105987e-02	k: 1457	n:30000
UBA1   30000 perm   6 sec   (4728 perm/sec)   p_kst 4.856667e-02   p_cons 1.728333e-01   p_joint 3.876667e-02

Joint ci ratio: 9.337536e-02	ci left: 4.022615e-02	ci right 4.419066e-02	k: 1687	n:40000
Cons ci ratio: 4.279333e-02	ci left: 1.696764e-01	ci right 1.771211e-01	k: 6935	n:40000
KS ci ratio: 8.664882e-02	ci left: 4.656204e-02	ci right 5.080379e-02	k: 1946	n:40000
UBA1   40000 perm   9 sec   (4587 perm/sec)   p_kst 4.865000e-02   p_cons 1.733750e-01   p_joint 4.217500e-02

Outputting figure to mutsig2_images.part000000000185/UBA1.3_3277_40000_0.04865_0.17338_0.042175.png
                gene_name: UBA1
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.049 
        ci_ks_bounds_left: 0.047 
       ci_ks_bounds_right: 0.051 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.042 
     ci_joint_bounds_left: 0.040 
    ci_joint_bounds_right: 0.044 

Current progress: 44 percent done.
UBA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.458799e-02	ci left: 8.718340e-01	ci right 8.847448e-01	k: 8784	n:10000
KS ci ratio: 3.145274e-02	ci left: 5.986524e-01	ci right 6.178845e-01	k: 6083	n:10000
UBA3   10000 perm   2 sec   (6498 perm/sec)   p_kst 6.083000e-01   p_cons 8.784000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000185/UBA3.3_1464_10000_0.6083_0.8784_1.png
                gene_name: UBA3
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 47 percent done.
UBAC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.973534e-02	ci left: 7.897918e-01	ci right 8.056344e-01	k: 7978	n:10000
Cons ci ratio: 4.714180e-02	ci left: 3.990427e-01	ci right 4.184105e-01	k: 4087	n:10000
KS ci ratio: 4.756368e-02	ci left: 3.947600e-01	ci right 4.140957e-01	k: 4044	n:10000
UBAC1   10000 perm   2 sec   (6502 perm/sec)   p_kst 4.044000e-01   p_cons 4.087000e-01   p_joint 7.978000e-01

Outputting figure to mutsig2_images.part000000000185/UBAC1.3_1258_10000_0.4044_0.4087_0.7978.png
                gene_name: UBAC1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 50 percent done.
UBASH3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.540566e-03	ci left: 9.605805e-01	ci right 9.679458e-01	k: 9644	n:10000
Cons ci ratio: 3.139998e-02	ci left: 5.994557e-01	ci right 6.186808e-01	k: 6091	n:10000
KS ci ratio: 2.043026e-02	ci left: 7.782343e-01	ci right 7.943986e-01	k: 7864	n:10000
UBASH3B   10000 perm   2 sec   (5963 perm/sec)   p_kst 7.864000e-01   p_cons 6.091000e-01   p_joint 9.644000e-01

Outputting figure to mutsig2_images.part000000000185/UBASH3B.3_2006_10000_0.7864_0.6091_0.9644.png
                gene_name: UBASH3B
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 53 percent done.
UBE2NL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.480348e-02	ci left: 1.390351e-01	ci right 1.529718e-01	k: 1459	n:10000
Cons ci ratio: 4.966014e-02	ci left: 3.742535e-01	ci right 3.934142e-01	k: 3838	n:10000
KS ci ratio: 9.480348e-02	ci left: 1.390351e-01	ci right 1.529718e-01	k: 1459	n:10000
UBE2NL   10000 perm   1 sec   (6840 perm/sec)   p_kst 1.459000e-01   p_cons 3.838000e-01   p_joint 1.459000e-01

Outputting figure to mutsig2_images.part000000000185/UBE2NL.3_466_10000_0.1459_0.3838_0.1459.png
                gene_name: UBE2NL
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 56 percent done.
UBE4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.173608e-02	ci left: 9.122441e-01	ci right 9.231112e-01	k: 9178	n:10000
Cons ci ratio: 4.715155e-02	ci left: 3.989431e-01	ci right 4.183102e-01	k: 4086	n:10000
KS ci ratio: 2.121859e-02	ci left: 7.650660e-01	ci right 7.815745e-01	k: 7734	n:10000
UBE4B   10000 perm   2 sec   (5397 perm/sec)   p_kst 7.734000e-01   p_cons 4.086000e-01   p_joint 9.178000e-01

Outputting figure to mutsig2_images.part000000000185/UBE4B.3_4021_10000_0.7734_0.4086_0.9178.png
                gene_name: UBE4B
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 59 percent done.
TXNRD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.965928e-02	ci left: 4.842538e-01	ci right 5.039497e-01	k: 4941	n:10000
Cons ci ratio: 7.023701e-02	ci left: 2.290880e-01	ci right 2.458652e-01	k: 2374	n:10000
KS ci ratio: 8.230215e-02	ci left: 1.772353e-01	ci right 1.925487e-01	k: 1848	n:10000
TXNRD1   10000 perm   2 sec   (6510 perm/sec)   p_kst 1.848000e-01   p_cons 2.374000e-01   p_joint 4.941000e-01

Outputting figure to mutsig2_images.part000000000185/TXNRD1.2_2032_10000_0.1848_0.2374_0.4941.png
                gene_name: TXNRD1
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 62 percent done.
TYRP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.818083e-02	ci left: 1.576751e-01	ci right 1.723206e-01	k: 1649	n:10000
Cons ci ratio: 1.084215e-01	ci left: 1.092981e-01	ci right 1.219268e-01	k: 1155	n:10000
KS ci ratio: 2.391782e-02	ci left: 7.198696e-01	ci right 7.373970e-01	k: 7287	n:10000
TYRP1   10000 perm   2 sec   (6521 perm/sec)   p_kst 7.287000e-01   p_cons 1.155000e-01   p_joint 1.649000e-01

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 7.625736e-02	ci left: 1.122322e-01	ci right 1.211796e-01	k: 2333	n:20000
KS ci ratio: 1.685288e-02	ci left: 7.238897e-01	ci right 7.362433e-01	k: 14602	n:20000
TYRP1   20000 perm   4 sec   (5614 perm/sec)   p_kst 7.301000e-01   p_cons 1.166500e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000185/TYRP1.2_1642_20000_0.7301_0.11665_1.png
                gene_name: TYRP1
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 66 percent done.
TYW3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.297280e-02	ci left: 4.443061e-01	ci right 4.639206e-01	k: 4541	n:10000
KS ci ratio: 3.011568e-02	ci left: 6.192445e-01	ci right 6.382804e-01	k: 6288	n:10000
TYW3   10000 perm   1 sec   (8297 perm/sec)   p_kst 6.288000e-01   p_cons 4.541000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000185/TYW3.2_804_10000_0.6288_0.4541_1.png
                gene_name: TYW3
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 69 percent done.
UAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.862636e-02	ci left: 3.842059e-01	ci right 4.034560e-01	k: 3938	n:10000
KS ci ratio: 4.026683e-02	ci left: 4.766589e-01	ci right 4.963490e-01	k: 4865	n:10000
UAP1   10000 perm   1 sec   (7455 perm/sec)   p_kst 4.865000e-01   p_cons 3.938000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000185/UAP1.2_1554_10000_0.4865_0.3938_1.png
                gene_name: UAP1
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
UBA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.189885e-01	ci left: 9.204578e-02	ci right 1.037896e-01	k: 978	n:10000
Cons ci ratio: 4.209943e-02	ci left: 4.544868e-01	ci right 4.741340e-01	k: 4643	n:10000
KS ci ratio: 1.665240e-01	ci left: 4.811345e-02	ci right 5.694952e-02	k: 524	n:10000
UBA2   10000 perm   1 sec   (7281 perm/sec)   p_kst 5.240000e-02   p_cons 4.643000e-01   p_joint 9.780000e-02

Joint ci ratio: 7.320138e-02	ci left: 1.207908e-01	ci right 1.300185e-01	k: 2507	n:20000
Cons ci ratio: 2.955372e-02	ci left: 4.610148e-01	ci right 4.748945e-01	k: 9359	n:20000
KS ci ratio: 1.182888e-01	ci left: 4.896323e-02	ci right 5.516782e-02	k: 1040	n:20000
UBA2   20000 perm   3 sec   (6465 perm/sec)   p_kst 5.200000e-02   p_cons 4.679500e-01   p_joint 1.253500e-01

Joint ci ratio: 5.437311e-02	ci left: 1.436368e-01	ci right 1.516982e-01	k: 4429	n:30000
Cons ci ratio: 2.412390e-02	ci left: 4.624402e-01	ci right 4.737659e-01	k: 14043	n:30000
KS ci ratio: 9.759274e-02	ci left: 4.853745e-02	ci right 5.354995e-02	k: 1530	n:30000
UBA2   30000 perm   5 sec   (6151 perm/sec)   p_kst 5.100000e-02   p_cons 4.681000e-01   p_joint 1.476333e-01

Outputting figure to mutsig2_images.part000000000185/UBA2.2_1991_30000_0.051_0.4681_0.14763.png
                gene_name: UBA2
               theta_stop: 0.098 
                    nperm: 30000 
                     p_ks: 0.051 
        ci_ks_bounds_left: 0.049 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 75 percent done.
UBA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.823653e-02	ci left: 8.144611e-01	ci right 8.295509e-01	k: 8221	n:10000
Cons ci ratio: 9.047443e-03	ci left: 9.450255e-01	ci right 9.537104e-01	k: 9495	n:10000
KS ci ratio: 4.618961e-02	ci left: 4.089058e-01	ci right 4.283416e-01	k: 4186	n:10000
UBA6   10000 perm   1 sec   (6681 perm/sec)   p_kst 4.186000e-01   p_cons 9.495000e-01   p_joint 8.221000e-01

Outputting figure to mutsig2_images.part000000000185/UBA6.2_3291_10000_0.4186_0.9495_0.8221.png
                gene_name: UBA6
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 78 percent done.
UBB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.783921e-02	ci left: 6.553502e-01	ci right 6.739538e-01	k: 6647	n:10000
Cons ci ratio: 7.374510e-02	ci left: 2.121107e-01	ci right 2.284526e-01	k: 2202	n:10000
KS ci ratio: 3.336069e-02	ci left: 5.701540e-01	ci right 5.895994e-01	k: 5799	n:10000
UBB   10000 perm   1 sec   (8102 perm/sec)   p_kst 5.799000e-01   p_cons 2.202000e-01   p_joint 6.647000e-01

Outputting figure to mutsig2_images.part000000000185/UBB.2_694_10000_0.5799_0.2202_0.6647.png
                gene_name: UBB
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.67 

Current progress: 81 percent done.
UBE2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.497140e-03	ci left: 9.902747e-01	ci right 9.938297e-01	k: 9922	n:10000
Cons ci ratio: 9.028594e-03	ci left: 9.452335e-01	ci right 9.539023e-01	k: 9497	n:10000
KS ci ratio: 3.497140e-03	ci left: 9.902747e-01	ci right 9.938297e-01	k: 9922	n:10000
UBE2A   10000 perm   1 sec   (8284 perm/sec)   p_kst 9.922000e-01   p_cons 9.497000e-01   p_joint 9.922000e-01

Outputting figure to mutsig2_images.part000000000185/UBE2A.2_483_10000_0.9922_0.9497_0.9922.png
                gene_name: UBE2A
               theta_stop: 0.0090 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 84 percent done.
UBE2CBP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.524235e-02	ci left: 3.255497e-01	ci right 3.441466e-01	k: 3348	n:10000
Cons ci ratio: 8.181399e-02	ci left: 1.790063e-01	ci right 1.943767e-01	k: 1866	n:10000
KS ci ratio: 8.083070e-02	ci left: 1.826474e-01	ci right 1.981334e-01	k: 1903	n:10000
UBE2CBP   10000 perm   1 sec   (8108 perm/sec)   p_kst 1.903000e-01   p_cons 1.866000e-01   p_joint 3.348000e-01

Outputting figure to mutsig2_images.part000000000185/UBE2CBP.2_1210_10000_0.1903_0.1866_0.3348.png
                gene_name: UBE2CBP
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 88 percent done.
UBE2D2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.487993e-02	ci left: 8.674390e-01	ci right 8.805423e-01	k: 8741	n:10000
Cons ci ratio: 6.833256e-02	ci left: 2.390661e-01	ci right 2.560812e-01	k: 2475	n:10000
KS ci ratio: 9.739590e-02	ci left: 1.325692e-01	ci right 1.462416e-01	k: 1393	n:10000
UBE2D2   10000 perm   1 sec   (8022 perm/sec)   p_kst 1.393000e-01   p_cons 2.475000e-01   p_joint 8.741000e-01

Outputting figure to mutsig2_images.part000000000185/UBE2D2.2_472_10000_0.1393_0.2475_0.8741.png
                gene_name: UBE2D2
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 91 percent done.
UBE2E2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.262761e+00	ci left: 2.422185e-05	ci right 7.222801e-04	k: 2	n:10000
Cons ci ratio: 3.469974e-01	ci left: 1.041531e-02	ci right 1.487532e-02	k: 125	n:10000
KS ci ratio: 2.073636e-01	ci left: 3.091404e-02	ci right 3.816041e-02	k: 344	n:10000
UBE2E2   10000 perm   1 sec   (7926 perm/sec)   p_kst 3.440000e-02   p_cons 1.250000e-02   p_joint 2.000000e-04

Joint ci ratio: 1.752814e+00	ci left: 5.449587e-05	ci right 5.119995e-04	k: 4	n:20000
Cons ci ratio: 2.509773e-01	ci left: 1.053722e-02	ci right 1.360709e-02	k: 240	n:20000
KS ci ratio: 1.452206e-01	ci left: 3.259226e-02	ci right 3.774403e-02	k: 702	n:20000
UBE2E2   20000 perm   3 sec   (6887 perm/sec)   p_kst 3.510000e-02   p_cons 1.200000e-02   p_joint 2.000000e-04

Joint ci ratio: 2.263062e+00	ci left: 8.073745e-06	ci right 2.408020e-04	k: 2	n:30000
Cons ci ratio: 2.044948e-01	ci left: 1.086192e-02	ci right 1.336723e-02	k: 362	n:30000
KS ci ratio: 1.180807e-01	ci left: 3.333738e-02	ci right 3.755320e-02	k: 1062	n:30000
UBE2E2   30000 perm   5 sec   (6595 perm/sec)   p_kst 3.540000e-02   p_cons 1.206667e-02   p_joint 6.666667e-05

Joint ci ratio: 1.959878e+00	ci left: 1.546707e-05	ci right 2.191660e-04	k: 3	n:40000
Cons ci ratio: 1.787886e-01	ci left: 1.081261e-02	ci right 1.295913e-02	k: 474	n:40000
KS ci ratio: 1.013140e-01	ci left: 3.424442e-02	ci right 3.792333e-02	k: 1442	n:40000
UBE2E2   40000 perm   6 sec   (6377 perm/sec)   p_kst 3.605000e-02   p_cons 1.185000e-02   p_joint 7.500000e-05

Joint ci ratio: 1.752972e+00	ci left: 2.179772e-05	ci right 2.048190e-04	k: 4	n:50000
Cons ci ratio: 1.609804e-01	ci left: 1.077589e-02	ci right 1.268143e-02	k: 585	n:50000
KS ci ratio: 9.001805e-02	ci left: 3.489277e-02	ci right 3.820132e-02	k: 1826	n:50000
UBE2E2   50000 perm   8 sec   (6162 perm/sec)   p_kst 3.652000e-02   p_cons 1.170000e-02   p_joint 8.000000e-05

Joint ci ratio: 1.087086e+00	ci left: 1.033471e-04	ci right 3.493337e-04	k: 12	n:60000
Cons ci ratio: 1.475074e-01	ci left: 1.077463e-02	ci right 1.250642e-02	k: 697	n:60000
KS ci ratio: 8.208565e-02	ci left: 3.511161e-02	ci right 3.813343e-02	k: 2196	n:60000
UBE2E2   60000 perm   10 sec   (6015 perm/sec)   p_kst 3.660000e-02   p_cons 1.161667e-02   p_joint 2.000000e-04

Joint ci ratio: 8.991812e-01	ci left: 1.524060e-04	ci right 4.063662e-04	k: 18	n:70000
Cons ci ratio: 1.369346e-01	ci left: 1.077852e-02	ci right 1.237663e-02	k: 809	n:70000
KS ci ratio: 7.627766e-02	ci left: 3.496862e-02	ci right 3.775570e-02	k: 2544	n:70000
UBE2E2   70000 perm   12 sec   (5871 perm/sec)   p_kst 3.634286e-02   p_cons 1.155714e-02   p_joint 2.571429e-04

Joint ci ratio: 1.131515e+00	ci left: 6.864144e-05	ci right 2.460121e-04	k: 11	n:80000
Cons ci ratio: 1.292048e-01	ci left: 1.063957e-02	ci right 1.212119e-02	k: 909	n:80000
KS ci ratio: 7.115566e-02	ci left: 3.524794e-02	ci right 3.786081e-02	k: 2923	n:80000
UBE2E2   80000 perm   14 sec   (5744 perm/sec)   p_kst 3.653750e-02   p_cons 1.136250e-02   p_joint 1.375000e-04

Joint ci ratio: 1.131525e+00	ci left: 6.101442e-05	ci right 2.186788e-04	k: 11	n:90000
Cons ci ratio: 1.224675e-01	ci left: 1.056580e-02	ci right 1.195486e-02	k: 1012	n:90000
KS ci ratio: 6.712332e-02	ci left: 3.528422e-02	ci right 3.774577e-02	k: 3285	n:90000
UBE2E2   90000 perm   16 sec   (5638 perm/sec)   p_kst 3.650000e-02   p_cons 1.124444e-02   p_joint 1.222222e-04

Joint ci ratio: 1.087136e+00	ci left: 6.200724e-05	ci right 2.096065e-04	k: 12	n:100000
Cons ci ratio: 1.158480e-01	ci left: 1.066380e-02	ci right 1.198477e-02	k: 1131	n:100000
KS ci ratio: 6.365267e-02	ci left: 3.537569e-02	ci right 3.771129e-02	k: 3653	n:100000
UBE2E2   100000 perm   18 sec   (5535 perm/sec)   p_kst 3.653000e-02   p_cons 1.131000e-02   p_joint 1.200000e-04

Joint ci ratio: 1.012066e+00	ci left: 6.958288e-05	ci right 2.135328e-04	k: 14	n:110000
Cons ci ratio: 1.111450e-01	ci left: 1.055995e-02	ci right 1.181147e-02	k: 1229	n:110000
KS ci ratio: 6.086672e-02	ci left: 3.522928e-02	ci right 3.744980e-02	k: 3996	n:110000
UBE2E2   110000 perm   20 sec   (5436 perm/sec)   p_kst 3.632727e-02   p_cons 1.117273e-02   p_joint 1.272727e-04

Joint ci ratio: 9.799306e-01	ci left: 6.996318e-05	ci right 2.061601e-04	k: 15	n:120000
Cons ci ratio: 1.066070e-01	ci left: 1.054734e-02	ci right 1.174313e-02	k: 1336	n:120000
KS ci ratio: 5.831964e-02	ci left: 3.522417e-02	ci right 3.734832e-02	k: 4353	n:120000
UBE2E2   120000 perm   22 sec   (5342 perm/sec)   p_kst 3.627500e-02   p_cons 1.113333e-02   p_joint 1.250000e-04

Joint ci ratio: 8.553417e-01	ci left: 9.397568e-05	ci right 2.375930e-04	k: 20	n:130000
Cons ci ratio: 1.029804e-01	ci left: 1.045509e-02	ci right 1.159765e-02	k: 1432	n:130000
KS ci ratio: 5.593233e-02	ci left: 3.538844e-02	ci right 3.743231e-02	k: 4732	n:130000
UBE2E2   130000 perm   25 sec   (5250 perm/sec)   p_kst 3.640000e-02   p_cons 1.101538e-02   p_joint 1.538462e-04

Joint ci ratio: 8.356782e-01	ci left: 9.285469e-05	ci right 2.292818e-04	k: 21	n:140000
Cons ci ratio: 9.907970e-02	ci left: 1.050899e-02	ci right 1.161140e-02	k: 1547	n:140000
KS ci ratio: 5.410230e-02	ci left: 3.516416e-02	ci right 3.712654e-02	k: 5059	n:140000
UBE2E2   140000 perm   27 sec   (5159 perm/sec)   p_kst 3.613571e-02   p_cons 1.105000e-02   p_joint 1.500000e-04

Joint ci ratio: 8.001000e-01	ci left: 9.720258e-05	ci right 2.300665e-04	k: 23	n:150000
Cons ci ratio: 9.550407e-02	ci left: 1.057593e-02	ci right 1.164309e-02	k: 1665	n:150000
KS ci ratio: 5.226494e-02	ci left: 3.520114e-02	ci right 3.709685e-02	k: 5421	n:150000
UBE2E2   150000 perm   30 sec   (5075 perm/sec)   p_kst 3.614000e-02   p_cons 1.110000e-02   p_joint 1.533333e-04

Joint ci ratio: 8.001041e-01	ci left: 9.112728e-05	ci right 2.156878e-04	k: 23	n:160000
Cons ci ratio: 9.279053e-02	ci left: 1.051910e-02	ci right 1.154873e-02	k: 1764	n:160000
KS ci ratio: 5.066200e-02	ci left: 3.515422e-02	ci right 3.698764e-02	k: 5770	n:160000
UBE2E2   160000 perm   32 sec   (4987 perm/sec)   p_kst 3.606250e-02   p_cons 1.102500e-02   p_joint 1.437500e-04

Joint ci ratio: 7.687142e-01	ci left: 9.517091e-05	ci right 2.170802e-04	k: 25	n:170000
Cons ci ratio: 9.012490e-02	ci left: 1.050960e-02	ci right 1.150718e-02	k: 1870	n:170000
KS ci ratio: 4.908167e-02	ci left: 3.527637e-02	ci right 3.705714e-02	k: 6147	n:170000
UBE2E2   170000 perm   35 sec   (4904 perm/sec)   p_kst 3.615882e-02   p_cons 1.100000e-02   p_joint 1.470588e-04

Joint ci ratio: 7.543457e-01	ci left: 9.435801e-05	ci right 2.116375e-04	k: 26	n:180000
Cons ci ratio: 8.806014e-02	ci left: 1.040914e-02	ci right 1.137338e-02	k: 1959	n:180000
KS ci ratio: 4.781572e-02	ci left: 3.513312e-02	ci right 3.685965e-02	k: 6478	n:180000
UBE2E2   180000 perm   37 sec   (4820 perm/sec)   p_kst 3.598889e-02   p_cons 1.088333e-02   p_joint 1.444444e-04

Joint ci ratio: 7.278683e-01	ci left: 9.792741e-05	ci right 2.129814e-04	k: 28	n:190000
Cons ci ratio: 8.583505e-02	ci left: 1.039160e-02	ci right 1.132868e-02	k: 2062	n:190000
KS ci ratio: 4.651553e-02	ci left: 3.519283e-02	ci right 3.687400e-02	k: 6845	n:190000
UBE2E2   190000 perm   40 sec   (4746 perm/sec)   p_kst 3.602632e-02   p_cons 1.085263e-02   p_joint 1.473684e-04

Joint ci ratio: 6.823264e-01	ci left: 1.094424e-04	ci right 2.258648e-04	k: 32	n:200000
Cons ci ratio: 8.345945e-02	ci left: 1.045444e-02	ci right 1.136982e-02	k: 2181	n:200000
KS ci ratio: 4.531268e-02	ci left: 3.525208e-02	ci right 3.689140e-02	k: 7213	n:200000
UBE2E2   200000 perm   43 sec   (4670 perm/sec)   p_kst 3.606500e-02   p_cons 1.090500e-02   p_joint 1.600000e-04

Joint ci ratio: 6.276426e-01	ci left: 1.280558e-04	ci right 2.483629e-04	k: 38	n:210000
Cons ci ratio: 8.188463e-02	ci left: 1.035298e-02	ci right 1.124155e-02	k: 2266	n:210000
KS ci ratio: 4.418949e-02	ci left: 3.532034e-02	ci right 3.692107e-02	k: 7584	n:210000
UBE2E2   210000 perm   46 sec   (4600 perm/sec)   p_kst 3.611429e-02   p_cons 1.079048e-02   p_joint 1.809524e-04

Joint ci ratio: 6.276453e-01	ci left: 1.222349e-04	ci right 2.370740e-04	k: 38	n:220000
Cons ci ratio: 8.012062e-02	ci left: 1.033218e-02	ci right 1.119897e-02	k: 2367	n:220000
KS ci ratio: 4.318815e-02	ci left: 3.531537e-02	ci right 3.687871e-02	k: 7940	n:220000
UBE2E2   220000 perm   49 sec   (4529 perm/sec)   p_kst 3.609091e-02   p_cons 1.075909e-02   p_joint 1.727273e-04

Joint ci ratio: 6.048126e-01	ci left: 1.279260e-04	ci right 2.418233e-04	k: 41	n:230000
Cons ci ratio: 7.821014e-02	ci left: 1.038159e-02	ci right 1.123081e-02	k: 2484	n:230000
KS ci ratio: 4.230485e-02	ci left: 3.522513e-02	ci right 3.675181e-02	k: 8276	n:230000
UBE2E2   230000 perm   52 sec   (4462 perm/sec)   p_kst 3.598261e-02   p_cons 1.080000e-02   p_joint 1.782609e-04

Joint ci ratio: 5.779159e-01	ci left: 1.367670e-04	ci right 2.508818e-04	k: 45	n:240000
Cons ci ratio: 7.617892e-02	ci left: 1.049660e-02	ci right 1.133194e-02	k: 2618	n:240000
KS ci ratio: 4.138647e-02	ci left: 3.528710e-02	ci right 3.678247e-02	k: 8647	n:240000
UBE2E2   240000 perm   55 sec   (4395 perm/sec)   p_kst 3.602917e-02   p_cons 1.090833e-02   p_joint 1.875000e-04

Joint ci ratio: 4.302036e-01	ci left: 2.608764e-04	ci right 4.071184e-04	k: 82	n:250000
Cons ci ratio: 7.454489e-02	ci left: 1.053200e-02	ci right 1.135140e-02	k: 2734	n:250000
KS ci ratio: 4.055808e-02	ci left: 3.528898e-02	ci right 3.675380e-02	k: 9004	n:250000
UBE2E2   250000 perm   58 sec   (4329 perm/sec)   p_kst 3.601600e-02   p_cons 1.093600e-02   p_joint 3.280000e-04

Joint ci ratio: 2.806112e-01	ci left: 6.448776e-04	ci right 8.588128e-04	k: 194	n:260000
Cons ci ratio: 7.329816e-02	ci left: 1.048177e-02	ci right 1.128304e-02	k: 2828	n:260000
KS ci ratio: 3.974231e-02	ci left: 3.535195e-02	ci right 3.678919e-02	k: 9377	n:260000
UBE2E2   260000 perm   61 sec   (4237 perm/sec)   p_kst 3.606538e-02   p_cons 1.087692e-02   p_joint 7.461538e-04

Joint ci ratio: 4.154499e-01	ci left: 2.614101e-04	ci right 4.015347e-04	k: 88	n:270000
Cons ci ratio: 7.164263e-02	ci left: 1.057360e-02	ci right 1.136288e-02	k: 2960	n:270000
KS ci ratio: 3.896350e-02	ci left: 3.542887e-02	ci right 3.684037e-02	k: 9755	n:270000
UBE2E2   270000 perm   65 sec   (4147 perm/sec)   p_kst 3.612963e-02   p_cons 1.096296e-02   p_joint 3.259259e-04

Joint ci ratio: 3.450566e-01	ci left: 3.813971e-04	ci right 5.435209e-04	k: 128	n:280000
Cons ci ratio: 7.040579e-02	ci left: 1.056431e-02	ci right 1.133872e-02	k: 3065	n:280000
KS ci ratio: 3.824440e-02	ci left: 3.547224e-02	ci right 3.685881e-02	k: 10125	n:280000
UBE2E2   280000 perm   69 sec   (4064 perm/sec)   p_kst 3.616071e-02   p_cons 1.094643e-02   p_joint 4.571429e-04

Joint ci ratio: 2.647886e-01	ci left: 6.552717e-04	ci right 8.583682e-04	k: 218	n:290000
Cons ci ratio: 6.924190e-02	ci left: 1.055238e-02	ci right 1.131262e-02	k: 3169	n:290000
KS ci ratio: 3.756000e-02	ci left: 3.551967e-02	ci right 3.688272e-02	k: 10497	n:290000
UBE2E2   290000 perm   73 sec   (3983 perm/sec)   p_kst 3.619655e-02   p_cons 1.092759e-02   p_joint 7.517241e-04

Joint ci ratio: 3.300454e-01	ci left: 3.925825e-04	ci right 5.506618e-04	k: 140	n:300000
Cons ci ratio: 6.815494e-02	ci left: 1.053479e-02	ci right 1.128137e-02	k: 3271	n:300000
KS ci ratio: 3.691283e-02	ci left: 3.556085e-02	ci right 3.690146e-02	k: 10868	n:300000
UBE2E2   300000 perm   77 sec   (3906 perm/sec)   p_kst 3.622667e-02   p_cons 1.090333e-02   p_joint 4.666667e-04

Joint ci ratio: 3.861843e-01	ci left: 2.682942e-04	ci right 3.994087e-04	k: 102	n:310000
Cons ci ratio: 6.704733e-02	ci left: 1.054063e-02	ci right 1.127501e-02	k: 3380	n:310000
KS ci ratio: 3.624783e-02	ci left: 3.569548e-02	ci right 3.701643e-02	k: 11269	n:310000
UBE2E2   310000 perm   81 sec   (3834 perm/sec)   p_kst 3.635161e-02   p_cons 1.090323e-02   p_joint 3.290323e-04

Joint ci ratio: 3.788967e-01	ci left: 2.712081e-04	ci right 4.006234e-04	k: 106	n:320000
Cons ci ratio: 6.593474e-02	ci left: 1.056464e-02	ci right 1.128801e-02	k: 3495	n:320000
KS ci ratio: 3.569854e-02	ci left: 3.566390e-02	ci right 3.696326e-02	k: 11619	n:320000
UBE2E2   320000 perm   85 sec   (3768 perm/sec)   p_kst 3.630937e-02   p_cons 1.092187e-02   p_joint 3.312500e-04

Joint ci ratio: 3.736945e-01	ci left: 2.712208e-04	ci right 3.984302e-04	k: 109	n:330000
Cons ci ratio: 6.503071e-02	ci left: 1.053660e-02	ci right 1.124779e-02	k: 3593	n:330000
KS ci ratio: 3.515673e-02	ci left: 3.566742e-02	ci right 3.694680e-02	k: 11980	n:330000
UBE2E2   330000 perm   89 sec   (3702 perm/sec)   p_kst 3.630303e-02   p_cons 1.088788e-02   p_joint 3.303030e-04

Joint ci ratio: 3.670795e-01	ci left: 2.739135e-04	ci right 3.995665e-04	k: 113	n:340000
Cons ci ratio: 6.386622e-02	ci left: 1.060869e-02	ci right 1.131145e-02	k: 3725	n:340000
KS ci ratio: 3.458656e-02	ci left: 3.577588e-02	ci right 3.703792e-02	k: 12377	n:340000
UBE2E2   340000 perm   93 sec   (3637 perm/sec)   p_kst 3.640294e-02   p_cons 1.095588e-02   p_joint 3.323529e-04

Joint ci ratio: 3.639020e-01	ci left: 2.712768e-04	ci right 3.943873e-04	k: 115	n:350000
Cons ci ratio: 6.288583e-02	ci left: 1.063457e-02	ci right 1.132784e-02	k: 3842	n:350000
KS ci ratio: 3.411537e-02	ci left: 3.573095e-02	ci right 3.697389e-02	k: 12722	n:350000
UBE2E2   350000 perm   98 sec   (3580 perm/sec)   p_kst 3.634857e-02   p_cons 1.097714e-02   p_joint 3.285714e-04

Joint ci ratio: 3.608056e-01	ci left: 2.687910e-04	ci right 3.894914e-04	k: 117	n:360000
Cons ci ratio: 6.205231e-02	ci left: 1.062354e-02	ci right 1.130658e-02	k: 3946	n:360000
KS ci ratio: 3.362690e-02	ci left: 3.576301e-02	ci right 3.698891e-02	k: 13094	n:360000
UBE2E2   360000 perm   102 sec   (3524 perm/sec)   p_kst 3.637222e-02   p_cons 1.096111e-02   p_joint 3.250000e-04

Joint ci ratio: 2.971041e-01	ci left: 4.005008e-04	ci right 5.426484e-04	k: 173	n:370000
Cons ci ratio: 6.119003e-02	ci left: 1.063446e-02	ci right 1.130837e-02	k: 4058	n:370000
KS ci ratio: 3.316777e-02	ci left: 3.577469e-02	ci right 3.698393e-02	k: 13459	n:370000
UBE2E2   370000 perm   107 sec   (3471 perm/sec)   p_kst 3.637568e-02   p_cons 1.096757e-02   p_joint 4.675676e-04

Joint ci ratio: 2.929252e-01	ci left: 4.021456e-04	ci right 5.424969e-04	k: 178	n:380000
Cons ci ratio: 6.043601e-02	ci left: 1.061894e-02	ci right 1.128328e-02	k: 4160	n:380000
KS ci ratio: 3.274170e-02	ci left: 3.575454e-02	ci right 3.694728e-02	k: 13812	n:380000
UBE2E2   380000 perm   111 sec   (3415 perm/sec)   p_kst 3.634737e-02   p_cons 1.094737e-02   p_joint 4.684211e-04

Joint ci ratio: 2.873594e-01	ci left: 4.084771e-04	ci right 5.478376e-04	k: 185	n:390000
Cons ci ratio: 5.978723e-02	ci left: 1.057648e-02	ci right 1.123082e-02	k: 4251	n:390000
KS ci ratio: 3.229026e-02	ci left: 3.582456e-02	ci right 3.700285e-02	k: 14200	n:390000
UBE2E2   390000 perm   116 sec   (3364 perm/sec)   p_kst 3.641026e-02   p_cons 1.090000e-02   p_joint 4.743590e-04

Joint ci ratio: 2.813710e-01	ci left: 4.168394e-04	ci right 5.555637e-04	k: 193	n:400000
Cons ci ratio: 5.888535e-02	ci left: 1.063472e-02	ci right 1.128239e-02	k: 4382	n:400000
KS ci ratio: 3.187514e-02	ci left: 3.585149e-02	ci right 3.701523e-02	k: 14572	n:400000
UBE2E2   400000 perm   121 sec   (3317 perm/sec)   p_kst 3.643000e-02   p_cons 1.095500e-02   p_joint 4.825000e-04

Joint ci ratio: 3.373239e-01	ci left: 2.738441e-04	ci right 3.870727e-04	k: 134	n:410000
Cons ci ratio: 5.809469e-02	ci left: 1.066374e-02	ci right 1.130417e-02	k: 4502	n:410000
KS ci ratio: 3.148438e-02	ci left: 3.585784e-02	ci right 3.700726e-02	k: 14936	n:410000
UBE2E2   410000 perm   125 sec   (3269 perm/sec)   p_kst 3.642927e-02   p_cons 1.098049e-02   p_joint 3.268293e-04

Joint ci ratio: 3.373253e-01	ci left: 2.673239e-04	ci right 3.778570e-04	k: 134	n:420000
Cons ci ratio: 5.733505e-02	ci left: 1.069144e-02	ci right 1.132486e-02	k: 4622	n:420000
KS ci ratio: 3.108130e-02	ci left: 3.592305e-02	ci right 3.705955e-02	k: 15325	n:420000
UBE2E2   420000 perm   130 sec   (3226 perm/sec)   p_kst 3.648810e-02   p_cons 1.100476e-02   p_joint 3.190476e-04

Joint ci ratio: 3.312461e-01	ci left: 2.717592e-04	ci right 3.816697e-04	k: 139	n:430000
Cons ci ratio: 5.664068e-02	ci left: 1.070414e-02	ci right 1.133038e-02	k: 4736	n:430000
KS ci ratio: 3.068926e-02	ci left: 3.599454e-02	ci right 3.711869e-02	k: 15718	n:430000
UBE2E2   430000 perm   135 sec   (3182 perm/sec)   p_kst 3.655349e-02   p_cons 1.101395e-02   p_joint 3.232558e-04

Joint ci ratio: 3.277532e-01	ci left: 2.718371e-04	ci right 3.803756e-04	k: 142	n:440000
Cons ci ratio: 5.594762e-02	ci left: 1.072528e-02	ci right 1.134482e-02	k: 4854	n:440000
KS ci ratio: 3.032537e-02	ci left: 3.603129e-02	ci right 3.714301e-02	k: 16097	n:440000
UBE2E2   440000 perm   140 sec   (3139 perm/sec)   p_kst 3.658409e-02   p_cons 1.103182e-02   p_joint 3.227273e-04

Joint ci ratio: 3.243685e-01	ci left: 2.719173e-04	ci right 3.791332e-04	k: 145	n:450000
Cons ci ratio: 5.534696e-02	ci left: 1.071921e-02	ci right 1.133155e-02	k: 4960	n:450000
KS ci ratio: 3.000437e-02	ci left: 3.599588e-02	ci right 3.709455e-02	k: 16444	n:450000
UBE2E2   450000 perm   145 sec   (3097 perm/sec)   p_kst 3.654222e-02   p_cons 1.102222e-02   p_joint 3.222222e-04

Joint ci ratio: 3.210865e-01	ci left: 2.719996e-04	ci right 3.779395e-04	k: 148	n:460000
Cons ci ratio: 5.469434e-02	ci left: 1.074133e-02	ci right 1.134746e-02	k: 5079	n:460000
KS ci ratio: 2.967594e-02	ci left: 3.600307e-02	ci right 3.708973e-02	k: 16810	n:460000
UBE2E2   460000 perm   150 sec   (3059 perm/sec)   p_kst 3.654348e-02   p_cons 1.104130e-02   p_joint 3.217391e-04

Joint ci ratio: 3.168613e-01	ci left: 2.740417e-04	ci right 3.790878e-04	k: 152	n:470000
Cons ci ratio: 5.409057e-02	ci left: 1.075204e-02	ci right 1.135188e-02	k: 5193	n:470000
KS ci ratio: 2.938292e-02	ci left: 3.595087e-02	ci right 3.702506e-02	k: 17148	n:470000
UBE2E2   470000 perm   156 sec   (3021 perm/sec)   p_kst 3.648511e-02   p_cons 1.104894e-02   p_joint 3.234043e-04

Joint ci ratio: 3.108244e-01	ci left: 2.798483e-04	ci right 3.846712e-04	k: 158	n:480000
Cons ci ratio: 5.344024e-02	ci left: 1.078907e-02	ci right 1.138352e-02	k: 5320	n:480000
KS ci ratio: 2.909583e-02	ci left: 3.590711e-02	ci right 3.696933e-02	k: 17489	n:480000
UBE2E2   480000 perm   161 sec   (2984 perm/sec)   p_kst 3.643542e-02   p_cons 1.108333e-02   p_joint 3.291667e-04

Joint ci ratio: 2.529727e-01	ci left: 4.278852e-04	ci right 5.536540e-04	k: 239	n:490000
Cons ci ratio: 5.285697e-02	ci left: 1.080651e-02	ci right 1.139521e-02	k: 5438	n:490000
KS ci ratio: 2.879437e-02	ci left: 3.591990e-02	ci right 3.697131e-02	k: 17857	n:490000
UBE2E2   490000 perm   166 sec   (2946 perm/sec)   p_kst 3.644286e-02   p_cons 1.109796e-02   p_joint 4.877551e-04

Joint ci ratio: 2.493618e-01	ci left: 4.324464e-04	ci right 5.574601e-04	k: 246	n:500000
Cons ci ratio: 5.227813e-02	ci left: 1.082920e-02	ci right 1.141249e-02	k: 5559	n:500000
KS ci ratio: 2.849479e-02	ci left: 3.595011e-02	ci right 3.699127e-02	k: 18234	n:500000
UBE2E2   500000 perm   172 sec   (2910 perm/sec)   p_kst 3.646800e-02   p_cons 1.111800e-02   p_joint 4.920000e-04

Joint ci ratio: 1.956783e-01	ci left: 7.093520e-04	ci right 8.650369e-04	k: 400	n:510000
Cons ci ratio: 5.175015e-02	ci left: 1.083749e-02	ci right 1.141515e-02	k: 5673	n:510000
KS ci ratio: 2.820515e-02	ci left: 3.597724e-02	ci right 3.700843e-02	k: 18610	n:510000
UBE2E2   510000 perm   177 sec   (2876 perm/sec)   p_kst 3.649020e-02   p_cons 1.112353e-02   p_joint 7.843137e-04

Joint ci ratio: 1.947103e-01	ci left: 7.030267e-04	ci right 8.564697e-04	k: 404	n:520000
Cons ci ratio: 5.121101e-02	ci left: 1.085687e-02	ci right 1.142936e-02	k: 5793	n:520000
KS ci ratio: 2.793945e-02	ci left: 3.596518e-02	ci right 3.698615e-02	k: 18966	n:520000
UBE2E2   520000 perm   182 sec   (2853 perm/sec)   p_kst 3.647308e-02   p_cons 1.114038e-02   p_joint 7.769231e-04

Joint ci ratio: 1.935199e-01	ci left: 6.987374e-04	ci right 8.502020e-04	k: 409	n:530000
Cons ci ratio: 5.072308e-02	ci left: 1.086066e-02	ci right 1.142773e-02	k: 5905	n:530000
KS ci ratio: 2.769004e-02	ci left: 3.593112e-02	ci right 3.694188e-02	k: 19310	n:530000
UBE2E2   530000 perm   187 sec   (2830 perm/sec)   p_kst 3.643396e-02   p_cons 1.114151e-02   p_joint 7.716981e-04

Joint ci ratio: 1.914300e-01	ci left: 7.016615e-04	ci right 8.519262e-04	k: 418	n:540000
Cons ci ratio: 5.026573e-02	ci left: 1.085701e-02	ci right 1.141863e-02	k: 6013	n:540000
KS ci ratio: 2.743706e-02	ci left: 3.592412e-02	ci right 3.692531e-02	k: 19668	n:540000
UBE2E2   540000 perm   192 sec   (2808 perm/sec)   p_kst 3.642222e-02   p_cons 1.113519e-02   p_joint 7.740741e-04

Joint ci ratio: 1.889651e-01	ci left: 7.079520e-04	ci right 8.573875e-04	k: 429	n:550000
Cons ci ratio: 4.979587e-02	ci left: 1.086429e-02	ci right 1.142088e-02	k: 6127	n:550000
KS ci ratio: 2.720569e-02	ci left: 3.587948e-02	ci right 3.687086e-02	k: 20005	n:550000
UBE2E2   550000 perm   197 sec   (2785 perm/sec)   p_kst 3.637273e-02   p_cons 1.114000e-02   p_joint 7.800000e-04

Joint ci ratio: 1.880929e-01	ci left: 7.021155e-04	ci right 8.495569e-04	k: 433	n:560000
Cons ci ratio: 4.935093e-02	ci left: 1.086604e-02	ci right 1.141761e-02	k: 6238	n:560000
KS ci ratio: 2.691014e-02	ci left: 3.601744e-02	ci right 3.700165e-02	k: 20444	n:560000
UBE2E2   560000 perm   203 sec   (2764 perm/sec)   p_kst 3.650714e-02   p_cons 1.113929e-02   p_joint 7.732143e-04

Joint ci ratio: 1.863829e-01	ci left: 7.031750e-04	ci right 8.493445e-04	k: 441	n:570000
Cons ci ratio: 4.897625e-02	ci left: 1.084175e-02	ci right 1.138779e-02	k: 6334	n:570000
KS ci ratio: 2.667909e-02	ci left: 3.600593e-02	ci right 3.698125e-02	k: 20800	n:570000
UBE2E2   570000 perm   208 sec   (2744 perm/sec)   p_kst 3.649123e-02   p_cons 1.111228e-02   p_joint 7.736842e-04

Joint ci ratio: 1.851309e-01	ci left: 7.009150e-04	ci right 8.455261e-04	k: 447	n:580000
Cons ci ratio: 4.854512e-02	ci left: 1.084728e-02	ci right 1.138865e-02	k: 6447	n:580000
KS ci ratio: 2.645519e-02	ci left: 3.599142e-02	ci right 3.695804e-02	k: 21154	n:580000
UBE2E2   580000 perm   213 sec   (2723 perm/sec)   p_kst 3.647241e-02   p_cons 1.111552e-02   p_joint 7.706897e-04

Joint ci ratio: 1.841068e-01	ci left: 6.971178e-04	ci right 8.400611e-04	k: 452	n:590000
Cons ci ratio: 4.816603e-02	ci left: 1.083422e-02	ci right 1.137060e-02	k: 6549	n:590000
KS ci ratio: 2.623304e-02	ci left: 3.598755e-02	ci right 3.694582e-02	k: 21514	n:590000
UBE2E2   590000 perm   218 sec   (2702 perm/sec)   p_kst 3.646441e-02   p_cons 1.110000e-02   p_joint 7.661017e-04

Joint ci ratio: 1.827007e-01	ci left: 6.966302e-04	ci right 8.382618e-04	k: 459	n:600000
Cons ci ratio: 4.774129e-02	ci left: 1.084631e-02	ci right 1.137843e-02	k: 6666	n:600000
KS ci ratio: 2.602626e-02	ci left: 3.595733e-02	ci right 3.690715e-02	k: 21858	n:600000
UBE2E2   600000 perm   224 sec   (2681 perm/sec)   p_kst 3.643000e-02   p_cons 1.111000e-02   p_joint 7.650000e-04

Joint ci ratio: 1.809390e-01	ci left: 6.992928e-04	ci right 8.399446e-04	k: 468	n:610000
Cons ci ratio: 4.728883e-02	ci left: 1.087585e-02	ci right 1.140422e-02	k: 6794	n:610000
KS ci ratio: 2.579238e-02	ci left: 3.601449e-02	ci right 3.695713e-02	k: 22255	n:610000
UBE2E2   610000 perm   229 sec   (2660 perm/sec)   p_kst 3.648361e-02   p_cons 1.113770e-02   p_joint 7.672131e-04

Joint ci ratio: 1.796038e-01	ci left: 6.987947e-04	ci right 8.381964e-04	k: 475	n:620000
Cons ci ratio: 4.690040e-02	ci left: 1.088054e-02	ci right 1.140468e-02	k: 6907	n:620000
KS ci ratio: 2.558579e-02	ci left: 3.601213e-02	ci right 3.694705e-02	k: 22616	n:620000
UBE2E2   620000 perm   235 sec   (2640 perm/sec)   p_kst 3.647742e-02   p_cons 1.114032e-02   p_joint 7.661290e-04

Joint ci ratio: 1.777461e-01	ci left: 7.028660e-04	ci right 8.414737e-04	k: 485	n:630000
Cons ci ratio: 4.653144e-02	ci left: 1.088040e-02	ci right 1.140030e-02	k: 7017	n:630000
KS ci ratio: 2.536977e-02	ci left: 3.604931e-02	ci right 3.697718e-02	k: 23002	n:630000
UBE2E2   630000 perm   241 sec   (2616 perm/sec)   p_kst 3.651111e-02   p_cons 1.113810e-02   p_joint 7.698413e-04

Joint ci ratio: 1.759448e-01	ci left: 7.068172e-04	ci right 8.446414e-04	k: 495	n:640000
Cons ci ratio: 4.612201e-02	ci left: 1.090345e-02	ci right 1.141974e-02	k: 7142	n:640000
KS ci ratio: 2.516248e-02	ci left: 3.607604e-02	ci right 3.699691e-02	k: 23382	n:640000
UBE2E2   640000 perm   247 sec   (2586 perm/sec)   p_kst 3.653438e-02   p_cons 1.115937e-02   p_joint 7.734375e-04

Joint ci ratio: 1.745428e-01	ci left: 7.077110e-04	ci right 8.444939e-04	k: 503	n:650000
Cons ci ratio: 4.576141e-02	ci left: 1.090755e-02	ci right 1.141990e-02	k: 7255	n:650000
KS ci ratio: 2.493950e-02	ci left: 3.616009e-02	ci right 3.707481e-02	k: 23800	n:650000
UBE2E2   650000 perm   254 sec   (2558 perm/sec)   p_kst 3.661538e-02   p_cons 1.116154e-02   p_joint 7.738462e-04

Joint ci ratio: 1.728363e-01	ci left: 7.114811e-04	ci right 8.475079e-04	k: 513	n:660000
Cons ci ratio: 4.543722e-02	ci left: 1.089806e-02	ci right 1.140624e-02	k: 7359	n:660000
KS ci ratio: 2.475525e-02	ci left: 3.614825e-02	ci right 3.705582e-02	k: 24156	n:660000
UBE2E2   660000 perm   261 sec   (2530 perm/sec)   p_kst 3.660000e-02   p_cons 1.115000e-02   p_joint 7.772727e-04

Joint ci ratio: 1.711789e-01	ci left: 7.151449e-04	ci right 8.504257e-04	k: 523	n:670000
Cons ci ratio: 4.512287e-02	ci left: 1.088740e-02	ci right 1.139147e-02	k: 7462	n:670000
KS ci ratio: 2.454853e-02	ci left: 3.621246e-02	ci right 3.711394e-02	k: 24563	n:670000
UBE2E2   670000 perm   268 sec   (2502 perm/sec)   p_kst 3.666119e-02   p_cons 1.113731e-02   p_joint 7.805970e-04

Joint ci ratio: 1.700470e-01	ci left: 7.144826e-04	ci right 8.486528e-04	k: 530	n:680000
Cons ci ratio: 4.477010e-02	ci left: 1.089887e-02	ci right 1.139943e-02	k: 7580	n:680000
KS ci ratio: 2.437376e-02	ci left: 3.619733e-02	ci right 3.709192e-02	k: 24917	n:680000
UBE2E2   680000 perm   275 sec   (2477 perm/sec)   p_kst 3.664265e-02   p_cons 1.114706e-02   p_joint 7.794118e-04

Joint ci ratio: 1.686238e-01	ci left: 7.166185e-04	ci right 8.499491e-04	k: 539	n:690000
Cons ci ratio: 4.448980e-02	ci left: 1.087849e-02	ci right 1.137490e-02	k: 7676	n:690000
KS ci ratio: 2.418728e-02	ci left: 3.622732e-02	ci right 3.711571e-02	k: 25302	n:690000
UBE2E2   690000 perm   281 sec   (2452 perm/sec)   p_kst 3.666957e-02   p_cons 1.112464e-02   p_joint 7.811594e-04

Joint ci ratio: 1.672358e-01	ci left: 7.186980e-04	ci right 8.512039e-04	k: 548	n:700000
Cons ci ratio: 4.414870e-02	ci left: 1.089120e-02	ci right 1.138429e-02	k: 7795	n:700000
KS ci ratio: 2.400890e-02	ci left: 3.624511e-02	ci right 3.712730e-02	k: 25679	n:700000
UBE2E2   700000 perm   288 sec   (2427 perm/sec)   p_kst 3.668429e-02   p_cons 1.113571e-02   p_joint 7.828571e-04

Joint ci ratio: 1.652896e-01	ci left: 7.261237e-04	ci right 8.582859e-04	k: 561	n:710000
Cons ci ratio: 4.378456e-02	ci left: 1.091889e-02	ci right 1.140905e-02	k: 7925	n:710000
KS ci ratio: 2.384058e-02	ci left: 3.624423e-02	ci right 3.712012e-02	k: 26043	n:710000
UBE2E2   710000 perm   295 sec   (2404 perm/sec)   p_kst 3.668028e-02   p_cons 1.116197e-02   p_joint 7.901408e-04

Joint ci ratio: 1.636951e-01	ci left: 7.306877e-04	ci right 8.622712e-04	k: 572	n:720000
Cons ci ratio: 4.345930e-02	ci left: 1.093072e-02	ci right 1.141767e-02	k: 8044	n:720000
KS ci ratio: 2.365948e-02	ci left: 3.629172e-02	ci right 3.716201e-02	k: 26442	n:720000
UBE2E2   720000 perm   302 sec   (2381 perm/sec)   p_kst 3.672500e-02   p_cons 1.117222e-02   p_joint 7.944444e-04

Joint ci ratio: 1.621457e-01	ci left: 7.351325e-04	ci right 8.661414e-04	k: 583	n:730000
Cons ci ratio: 4.316258e-02	ci left: 1.093139e-02	ci right 1.141497e-02	k: 8155	n:730000
KS ci ratio: 2.348972e-02	ci left: 3.631615e-02	ci right 3.718069e-02	k: 26825	n:730000
UBE2E2   730000 perm   310 sec   (2358 perm/sec)   p_kst 3.674658e-02   p_cons 1.117123e-02   p_joint 7.986301e-04

Joint ci ratio: 1.607749e-01	ci left: 7.381659e-04	ci right 8.684958e-04	k: 593	n:740000
Cons ci ratio: 4.289022e-02	ci left: 1.092269e-02	ci right 1.140276e-02	k: 8259	n:740000
KS ci ratio: 2.333380e-02	ci left: 3.630902e-02	ci right 3.716758e-02	k: 27185	n:740000
UBE2E2   740000 perm   317 sec   (2336 perm/sec)   p_kst 3.673649e-02   p_cons 1.116081e-02   p_joint 8.013514e-04

Joint ci ratio: 1.598359e-01	ci left: 7.372826e-04	ci right 8.666233e-04	k: 600	n:750000
Cons ci ratio: 4.262553e-02	ci left: 1.091292e-02	ci right 1.138953e-02	k: 8362	n:750000
KS ci ratio: 2.317090e-02	ci left: 3.633261e-02	ci right 3.718564e-02	k: 27568	n:750000
UBE2E2   750000 perm   324 sec   (2314 perm/sec)   p_kst 3.675733e-02   p_cons 1.114933e-02   p_joint 8.000000e-04

Joint ci ratio: 1.590442e-01	ci left: 7.351612e-04	ci right 8.634299e-04	k: 606	n:760000
Cons ci ratio: 4.234040e-02	ci left: 1.091644e-02	ci right 1.138993e-02	k: 8475	n:760000
KS ci ratio: 2.302719e-02	ci left: 3.630717e-02	ci right 3.715426e-02	k: 27914	n:760000
UBE2E2   760000 perm   332 sec   (2292 perm/sec)   p_kst 3.672895e-02   p_cons 1.115132e-02   p_joint 7.973684e-04

Joint ci ratio: 1.574947e-01	ci left: 7.405810e-04	ci right 8.684175e-04	k: 618	n:770000
Cons ci ratio: 4.201641e-02	ci left: 1.094300e-02	ci right 1.141393e-02	k: 8606	n:770000
KS ci ratio: 2.288234e-02	ci left: 3.629404e-02	ci right 3.713542e-02	k: 28269	n:770000
UBE2E2   770000 perm   339 sec   (2270 perm/sec)   p_kst 3.671299e-02   p_cons 1.117662e-02   p_joint 8.025974e-04

Joint ci ratio: 1.563619e-01	ci left: 7.421717e-04	ci right 8.692751e-04	k: 627	n:780000
Cons ci ratio: 4.170458e-02	ci left: 1.096637e-02	ci right 1.143471e-02	k: 8735	n:780000
KS ci ratio: 2.272536e-02	ci left: 3.632716e-02	ci right 3.716346e-02	k: 28660	n:780000
UBE2E2   780000 perm   347 sec   (2248 perm/sec)   p_kst 3.674359e-02   p_cons 1.119872e-02   p_joint 8.038462e-04

Joint ci ratio: 1.556205e-01	ci left: 7.400756e-04	ci right 8.661628e-04	k: 633	n:790000
Cons ci ratio: 4.143978e-02	ci left: 1.096785e-02	ci right 1.143321e-02	k: 8847	n:790000
KS ci ratio: 2.258529e-02	ci left: 3.631666e-02	ci right 3.714750e-02	k: 29017	n:790000
UBE2E2   790000 perm   355 sec   (2228 perm/sec)   p_kst 3.673038e-02   p_cons 1.119873e-02   p_joint 8.012658e-04

Joint ci ratio: 1.547686e-01	ci left: 7.392348e-04	ci right 8.644254e-04	k: 640	n:800000
Cons ci ratio: 4.117765e-02	ci left: 1.097054e-02	ci right 1.143301e-02	k: 8960	n:800000
KS ci ratio: 2.245453e-02	ci left: 3.628530e-02	ci right 3.711055e-02	k: 29357	n:800000
UBE2E2   800000 perm   362 sec   (2207 perm/sec)   p_kst 3.669625e-02   p_cons 1.120000e-02   p_joint 8.000000e-04

Joint ci ratio: 1.542883e-01	ci left: 7.348556e-04	ci right 8.588827e-04	k: 644	n:810000
Cons ci ratio: 4.097297e-02	ci left: 1.094507e-02	ci right 1.140411e-02	k: 9050	n:810000
KS ci ratio: 2.232016e-02	ci left: 3.627315e-02	ci right 3.709313e-02	k: 29712	n:810000
UBE2E2   810000 perm   370 sec   (2187 perm/sec)   p_kst 3.668148e-02   p_cons 1.117284e-02   p_joint 7.950617e-04

Joint ci ratio: 2.329795e-01	ci left: 3.049372e-04	ci right 3.864654e-04	k: 282	n:820000
Cons ci ratio: 4.076004e-02	ci left: 1.092626e-02	ci right 1.138208e-02	k: 9145	n:820000
KS ci ratio: 2.216942e-02	ci left: 3.632075e-02	ci right 3.713618e-02	k: 30116	n:820000
UBE2E2   820000 perm   378 sec   (2168 perm/sec)   p_kst 3.672683e-02   p_cons 1.115244e-02   p_joint 3.439024e-04

Joint ci ratio: 2.317544e-01	ci left: 3.046673e-04	ci right 3.856337e-04	k: 285	n:830000
Cons ci ratio: 4.053044e-02	ci left: 1.091865e-02	ci right 1.137152e-02	k: 9249	n:830000
KS ci ratio: 2.204158e-02	ci left: 3.630370e-02	ci right 3.711399e-02	k: 30467	n:830000
UBE2E2   830000 perm   386 sec   (2148 perm/sec)   p_kst 3.670723e-02   p_cons 1.114337e-02   p_joint 3.433735e-04

Joint ci ratio: 1.518366e-01	ci left: 7.326533e-04	ci right 8.541651e-04	k: 665	n:840000
Cons ci ratio: 4.028291e-02	ci left: 1.092301e-02	ci right 1.137323e-02	k: 9363	n:840000
KS ci ratio: 2.192220e-02	ci left: 3.626694e-02	ci right 3.707197e-02	k: 30801	n:840000
UBE2E2   840000 perm   394 sec   (2130 perm/sec)   p_kst 3.666786e-02   p_cons 1.114643e-02   p_joint 7.916667e-04

Joint ci ratio: 1.507092e-01	ci left: 7.353533e-04	ci right 8.563257e-04	k: 675	n:850000
Cons ci ratio: 4.003559e-02	ci left: 1.092960e-02	ci right 1.137727e-02	k: 9479	n:850000
KS ci ratio: 2.178876e-02	ci left: 3.628255e-02	ci right 3.708296e-02	k: 31179	n:850000
UBE2E2   850000 perm   403 sec   (2111 perm/sec)   p_kst 3.668118e-02   p_cons 1.115176e-02   p_joint 7.941176e-04

Joint ci ratio: 1.498252e-01	ci left: 7.357553e-04	ci right 8.560202e-04	k: 683	n:860000
Cons ci ratio: 3.983477e-02	ci left: 1.091302e-02	ci right 1.135772e-02	k: 9575	n:860000
KS ci ratio: 2.165132e-02	ci left: 3.631863e-02	ci right 3.711473e-02	k: 31575	n:860000
UBE2E2   860000 perm   411 sec   (2092 perm/sec)   p_kst 3.671512e-02   p_cons 1.113372e-02   p_joint 7.941860e-04

Joint ci ratio: 1.492809e-01	ci left: 7.328303e-04	ci right 8.521431e-04	k: 688	n:870000
Cons ci ratio: 3.961209e-02	ci left: 1.091049e-02	ci right 1.135254e-02	k: 9683	n:870000
KS ci ratio: 2.152833e-02	ci left: 3.631502e-02	ci right 3.710646e-02	k: 31937	n:870000
UBE2E2   870000 perm   419 sec   (2075 perm/sec)   p_kst 3.670920e-02   p_cons 1.112989e-02   p_joint 7.908046e-04

Joint ci ratio: 1.486353e-01	ci left: 7.310667e-04	ci right 8.495318e-04	k: 694	n:880000
Cons ci ratio: 3.941347e-02	ci left: 1.089677e-02	ci right 1.133600e-02	k: 9781	n:880000
KS ci ratio: 2.140880e-02	ci left: 3.630698e-02	ci right 3.709380e-02	k: 32295	n:880000
UBE2E2   880000 perm   428 sec   (2057 perm/sec)   p_kst 3.669886e-02   p_cons 1.111477e-02   p_joint 7.886364e-04

Joint ci ratio: 1.478924e-01	ci left: 7.304258e-04	ci right 8.481433e-04	k: 701	n:890000
Cons ci ratio: 3.920577e-02	ci left: 1.089004e-02	ci right 1.132663e-02	k: 9885	n:890000
KS ci ratio: 2.128379e-02	ci left: 3.632373e-02	ci right 3.710626e-02	k: 32675	n:890000
UBE2E2   890000 perm   436 sec   (2040 perm/sec)   p_kst 3.671348e-02   p_cons 1.110674e-02   p_joint 7.876404e-04

Joint ci ratio: 1.470569e-01	ci left: 7.308709e-04	ci right 8.479361e-04	k: 709	n:900000
Cons ci ratio: 3.894813e-02	ci left: 1.091318e-02	ci right 1.134776e-02	k: 10016	n:900000
KS ci ratio: 2.117558e-02	ci left: 3.629148e-02	ci right 3.706929e-02	k: 33011	n:900000
UBE2E2   900000 perm   445 sec   (2023 perm/sec)   p_kst 3.667889e-02   p_cons 1.112889e-02   p_joint 7.877778e-04

Joint ci ratio: 1.464396e-01	ci left: 7.291906e-04	ci right 8.454535e-04	k: 715	n:910000
Cons ci ratio: 3.871093e-02	ci left: 1.092710e-02	ci right 1.135953e-02	k: 10139	n:910000
KS ci ratio: 2.106015e-02	ci left: 3.628946e-02	ci right 3.706294e-02	k: 33374	n:910000
UBE2E2   910000 perm   453 sec   (2007 perm/sec)   p_kst 3.667473e-02   p_cons 1.114176e-02   p_joint 7.857143e-04

Joint ci ratio: 1.453272e-01	ci left: 7.327848e-04	ci right 8.486563e-04	k: 726	n:920000
Cons ci ratio: 3.848940e-02	ci left: 1.093428e-02	ci right 1.136446e-02	k: 10256	n:920000
KS ci ratio: 2.095175e-02	ci left: 3.627020e-02	ci right 3.703924e-02	k: 33721	n:920000
UBE2E2   920000 perm   461 sec   (1994 perm/sec)   p_kst 3.665326e-02   p_cons 1.114783e-02   p_joint 7.891304e-04

Joint ci ratio: 1.446327e-01	ci left: 7.321593e-04	ci right 8.473307e-04	k: 733	n:930000
Cons ci ratio: 3.825298e-02	ci left: 1.095196e-02	ci right 1.138013e-02	k: 10383	n:930000
KS ci ratio: 2.084405e-02	ci left: 3.625457e-02	ci right 3.701928e-02	k: 34071	n:930000
UBE2E2   930000 perm   469 sec   (1982 perm/sec)   p_kst 3.663548e-02   p_cons 1.116452e-02   p_joint 7.881720e-04

Joint ci ratio: 1.441428e-01	ci left: 7.294972e-04	ci right 8.438279e-04	k: 738	n:940000
Cons ci ratio: 3.805750e-02	ci left: 1.094819e-02	ci right 1.137398e-02	k: 10490	n:940000
KS ci ratio: 2.074019e-02	ci left: 3.623188e-02	ci right 3.699226e-02	k: 34414	n:940000
UBE2E2   940000 perm   477 sec   (1972 perm/sec)   p_kst 3.661064e-02   p_cons 1.115957e-02   p_joint 7.851064e-04

Joint ci ratio: 1.435613e-01	ci left: 7.279068e-04	ci right 8.414885e-04	k: 744	n:950000
Cons ci ratio: 3.787583e-02	ci left: 1.093825e-02	ci right 1.136158e-02	k: 10591	n:950000
KS ci ratio: 2.063693e-02	ci left: 3.621281e-02	ci right 3.696896e-02	k: 34760	n:950000
UBE2E2   950000 perm   484 sec   (1961 perm/sec)   p_kst 3.658947e-02   p_cons 1.114842e-02   p_joint 7.831579e-04

Joint ci ratio: 1.427018e-01	ci left: 7.293637e-04	ci right 8.424334e-04	k: 753	n:960000
Cons ci ratio: 3.767893e-02	ci left: 1.093884e-02	ci right 1.135995e-02	k: 10702	n:960000
KS ci ratio: 2.051944e-02	ci left: 3.624805e-02	ci right 3.700058e-02	k: 35158	n:960000
UBE2E2   960000 perm   493 sec   (1948 perm/sec)   p_kst 3.662292e-02   p_cons 1.114792e-02   p_joint 7.843750e-04

Joint ci ratio: 2.147777e-01	ci left: 3.064426e-04	ci right 3.811302e-04	k: 332	n:970000
Cons ci ratio: 3.746405e-02	ci left: 1.095169e-02	ci right 1.137083e-02	k: 10825	n:970000
KS ci ratio: 2.040304e-02	ci left: 3.628566e-02	ci right 3.703464e-02	k: 35559	n:970000
UBE2E2   970000 perm   502 sec   (1934 perm/sec)   p_kst 3.665876e-02   p_cons 1.115979e-02   p_joint 3.422680e-04

Joint ci ratio: 2.125549e-01	ci left: 3.100763e-04	ci right 3.847656e-04	k: 339	n:980000
Cons ci ratio: 3.730452e-02	ci left: 1.093394e-02	ci right 1.135059e-02	k: 10918	n:980000
KS ci ratio: 2.030589e-02	ci left: 3.626259e-02	ci right 3.700749e-02	k: 35901	n:980000
UBE2E2   980000 perm   510 sec   (1923 perm/sec)   p_kst 3.663367e-02   p_cons 1.114082e-02   p_joint 3.459184e-04

Joint ci ratio: 2.110088e-01	ci left: 3.117269e-04	ci right 3.861970e-04	k: 344	n:990000
Cons ci ratio: 3.709085e-02	ci left: 1.094959e-02	ci right 1.136439e-02	k: 11044	n:990000
KS ci ratio: 2.019826e-02	ci left: 3.628122e-02	ci right 3.702251e-02	k: 36284	n:990000
UBE2E2   990000 perm   518 sec   (1912 perm/sec)   p_kst 3.665051e-02   p_cons 1.115556e-02   p_joint 3.474747e-04

Joint ci ratio: 2.097961e-01	ci left: 3.123989e-04	ci right 3.865455e-04	k: 348	n:1000000
Cons ci ratio: 3.689083e-02	ci left: 1.095899e-02	ci right 1.137185e-02	k: 11164	n:1000000
KS ci ratio: 2.009745e-02	ci left: 3.628157e-02	ci right 3.701912e-02	k: 36649	n:1000000
UBE2E2   1000000 perm   526 sec   (1901 perm/sec)   p_kst 3.664900e-02   p_cons 1.116400e-02   p_joint 3.480000e-04

Joint ci ratio: 2.080153e-01	ci left: 3.149357e-04	ci right 3.889691e-04	k: 354	n:1010000
Cons ci ratio: 3.671376e-02	ci left: 1.095643e-02	ci right 1.136717e-02	k: 11272	n:1010000
KS ci ratio: 1.999477e-02	ci left: 3.629374e-02	ci right 3.702773e-02	k: 37026	n:1010000
UBE2E2   1010000 perm   534 sec   (1891 perm/sec)   p_kst 3.665941e-02   p_cons 1.116040e-02   p_joint 3.504950e-04

Joint ci ratio: 2.071420e-01	ci left: 3.146364e-04	ci right 3.882496e-04	k: 357	n:1020000
Cons ci ratio: 3.651488e-02	ci left: 1.096850e-02	ci right 1.137742e-02	k: 11395	n:1020000
KS ci ratio: 1.990497e-02	ci left: 3.626569e-02	ci right 3.699577e-02	k: 37362	n:1020000
UBE2E2   1020000 perm   542 sec   (1881 perm/sec)   p_kst 3.662941e-02   p_cons 1.117157e-02   p_joint 3.500000e-04

Joint ci ratio: 2.062795e-01	ci left: 3.143436e-04	ci right 3.875433e-04	k: 360	n:1030000
Cons ci ratio: 3.631124e-02	ci left: 1.098515e-02	ci right 1.139236e-02	k: 11523	n:1030000
KS ci ratio: 1.980982e-02	ci left: 3.626137e-02	ci right 3.698784e-02	k: 37722	n:1030000
UBE2E2   1030000 perm   551 sec   (1871 perm/sec)   p_kst 3.662330e-02   p_cons 1.118738e-02   p_joint 3.495146e-04

Joint ci ratio: 2.062799e-01	ci left: 3.113210e-04	ci right 3.838170e-04	k: 360	n:1040000
Cons ci ratio: 3.615020e-02	ci left: 1.097766e-02	ci right 1.138276e-02	k: 11626	n:1040000
KS ci ratio: 1.971200e-02	ci left: 3.627150e-02	ci right 3.699455e-02	k: 38097	n:1040000
UBE2E2   1040000 perm   559 sec   (1861 perm/sec)   p_kst 3.663173e-02   p_cons 1.117885e-02   p_joint 3.461538e-04

Joint ci ratio: 2.054281e-01	ci left: 3.110659e-04	ci right 3.831659e-04	k: 363	n:1050000
Cons ci ratio: 3.599594e-02	ci left: 1.096749e-02	ci right 1.137045e-02	k: 11726	n:1050000
KS ci ratio: 1.961376e-02	ci left: 3.628808e-02	ci right 3.700781e-02	k: 38479	n:1050000
UBE2E2   1050000 perm   567 sec   (1851 perm/sec)   p_kst 3.664667e-02   p_cons 1.116762e-02   p_joint 3.457143e-04

Joint ci ratio: 2.054285e-01	ci left: 3.081312e-04	ci right 3.795512e-04	k: 363	n:1060000
Cons ci ratio: 3.583751e-02	ci left: 1.096126e-02	ci right 1.136218e-02	k: 11830	n:1060000
KS ci ratio: 1.951985e-02	ci left: 3.629403e-02	ci right 3.701039e-02	k: 38850	n:1060000
UBE2E2   1060000 perm   576 sec   (1841 perm/sec)   p_kst 3.665094e-02   p_cons 1.116038e-02   p_joint 3.424528e-04

Joint ci ratio: 2.045871e-01	ci left: 3.079113e-04	ci right 3.789514e-04	k: 366	n:1070000
Cons ci ratio: 3.567662e-02	ci left: 1.095792e-02	ci right 1.135688e-02	k: 11937	n:1070000
KS ci ratio: 1.942161e-02	ci left: 3.632034e-02	ci right 3.703357e-02	k: 39243	n:1070000
UBE2E2   1070000 perm   585 sec   (1831 perm/sec)   p_kst 3.667570e-02   p_cons 1.115607e-02   p_joint 3.420561e-04

Joint ci ratio: 2.034812e-01	ci left: 3.085748e-04	ci right 3.793353e-04	k: 370	n:1080000
Cons ci ratio: 3.549405e-02	ci left: 1.096934e-02	ci right 1.136663e-02	k: 12060	n:1080000
KS ci ratio: 1.932814e-02	ci left: 3.633419e-02	ci right 3.704422e-02	k: 39623	n:1080000
UBE2E2   1080000 perm   593 sec   (1820 perm/sec)   p_kst 3.668796e-02   p_cons 1.116667e-02   p_joint 3.425926e-04

Joint ci ratio: 2.018553e-01	ci left: 3.109691e-04	ci right 3.816386e-04	k: 376	n:1090000
Cons ci ratio: 3.531425e-02	ci left: 1.098055e-02	ci right 1.137619e-02	k: 12183	n:1090000
KS ci ratio: 1.923700e-02	ci left: 3.634414e-02	ci right 3.705098e-02	k: 39999	n:1090000
UBE2E2   1090000 perm   602 sec   (1810 perm/sec)   p_kst 3.669633e-02   p_cons 1.117706e-02   p_joint 3.449541e-04

Joint ci ratio: 2.005297e-01	ci left: 3.124586e-04	ci right 3.829433e-04	k: 381	n:1100000
Cons ci ratio: 3.515449e-02	ci left: 1.098074e-02	ci right 1.137456e-02	k: 12294	n:1100000
KS ci ratio: 1.914664e-02	ci left: 3.635573e-02	ci right 3.705944e-02	k: 40377	n:1100000
UBE2E2   1100000 perm   611 sec   (1801 perm/sec)   p_kst 3.670636e-02   p_cons 1.117636e-02   p_joint 3.463636e-04

Joint ci ratio: 1.989730e-01	ci left: 3.147788e-04	ci right 3.851687e-04	k: 387	n:1110000
Cons ci ratio: 3.497266e-02	ci left: 1.099612e-02	ci right 1.138842e-02	k: 12422	n:1110000
KS ci ratio: 1.906265e-02	ci left: 3.634828e-02	ci right 3.704873e-02	k: 40734	n:1110000
UBE2E2   1110000 perm   620 sec   (1791 perm/sec)   p_kst 3.669730e-02   p_cons 1.119099e-02   p_joint 3.486486e-04

Joint ci ratio: 1.984623e-01	ci left: 3.136651e-04	ci right 3.836042e-04	k: 389	n:1120000
Cons ci ratio: 3.481747e-02	ci left: 1.099619e-02	ci right 1.138671e-02	k: 12533	n:1120000
KS ci ratio: 1.897376e-02	ci left: 3.636320e-02	ci right 3.706063e-02	k: 41116	n:1120000
UBE2E2   1120000 perm   629 sec   (1782 perm/sec)   p_kst 3.671071e-02   p_cons 1.119018e-02   p_joint 3.473214e-04

Joint ci ratio: 1.972020e-01	ci left: 3.150949e-04	ci right 3.848531e-04	k: 394	n:1130000
Cons ci ratio: 3.465048e-02	ci left: 1.100502e-02	ci right 1.139395e-02	k: 12654	n:1130000
KS ci ratio: 1.889555e-02	ci left: 3.634262e-02	ci right 3.703675e-02	k: 41458	n:1130000
UBE2E2   1130000 perm   638 sec   (1772 perm/sec)   p_kst 3.668850e-02   p_cons 1.119823e-02   p_joint 3.486726e-04

Joint ci ratio: 1.964575e-01	ci left: 3.148328e-04	ci right 3.842383e-04	k: 397	n:1140000
Cons ci ratio: 3.452004e-02	ci left: 1.099197e-02	ci right 1.137894e-02	k: 12750	n:1140000
KS ci ratio: 1.881317e-02	ci left: 3.634162e-02	ci right 3.703267e-02	k: 41822	n:1140000
UBE2E2   1140000 perm   647 sec   (1763 perm/sec)   p_kst 3.668596e-02   p_cons 1.118421e-02   p_joint 3.482456e-04

Joint ci ratio: 2.578910e-01	ci left: 1.749881e-04	ci right 2.275833e-04	k: 230	n:1150000
Cons ci ratio: 3.436402e-02	ci left: 1.099639e-02	ci right 1.138173e-02	k: 12866	n:1150000
KS ci ratio: 1.873094e-02	ci left: 3.634410e-02	ci right 3.703215e-02	k: 42190	n:1150000
UBE2E2   1150000 perm   656 sec   (1753 perm/sec)   p_kst 3.668696e-02   p_cons 1.118783e-02   p_joint 2.000000e-04

Joint ci ratio: 2.567818e-01	ci left: 1.750925e-04	ci right 2.274565e-04	k: 232	n:1160000
Cons ci ratio: 3.423544e-02	ci left: 1.098450e-02	ci right 1.136795e-02	k: 12963	n:1160000
KS ci ratio: 1.865114e-02	ci left: 3.634140e-02	ci right 3.702643e-02	k: 42552	n:1160000
UBE2E2   1160000 perm   667 sec   (1740 perm/sec)   p_kst 3.668276e-02   p_cons 1.117500e-02   p_joint 2.000000e-04

Joint ci ratio: 1.935610e-01	ci left: 3.165159e-04	ci right 3.851425e-04	k: 409	n:1170000
Cons ci ratio: 3.407269e-02	ci left: 1.099569e-02	ci right 1.137768e-02	k: 13087	n:1170000
KS ci ratio: 1.856920e-02	ci left: 3.635066e-02	ci right 3.703283e-02	k: 42928	n:1170000
UBE2E2   1170000 perm   677 sec   (1728 perm/sec)   p_kst 3.669060e-02   p_cons 1.118547e-02   p_joint 3.495726e-04

Joint ci ratio: 1.933256e-01	ci left: 3.146400e-04	ci right 3.827671e-04	k: 410	n:1180000
Cons ci ratio: 3.393693e-02	ci left: 1.099073e-02	ci right 1.137099e-02	k: 13192	n:1180000
KS ci ratio: 1.849144e-02	ci left: 3.634796e-02	ci right 3.702719e-02	k: 43290	n:1180000
UBE2E2   1180000 perm   688 sec   (1715 perm/sec)   p_kst 3.668644e-02   p_cons 1.117966e-02   p_joint 3.474576e-04

Joint ci ratio: 2.551449e-01	ci left: 1.730377e-04	ci right 2.244047e-04	k: 235	n:1190000
Cons ci ratio: 3.375149e-02	ci left: 1.101919e-02	ci right 1.139832e-02	k: 13337	n:1190000
KS ci ratio: 1.840808e-02	ci left: 3.637041e-02	ci right 3.704697e-02	k: 43682	n:1190000
UBE2E2   1190000 perm   699 sec   (1703 perm/sec)   p_kst 3.670756e-02   p_cons 1.120756e-02   p_joint 1.974790e-04

Joint ci ratio: 2.540706e-01	ci left: 1.731560e-04	ci right 2.243075e-04	k: 237	n:1200000
Cons ci ratio: 3.361193e-02	ci left: 1.101909e-02	ci right 1.139661e-02	k: 13448	n:1200000
KS ci ratio: 1.833016e-02	ci left: 3.637591e-02	ci right 3.704967e-02	k: 44054	n:1200000
UBE2E2   1200000 perm   710 sec   (1691 perm/sec)   p_kst 3.671167e-02   p_cons 1.120667e-02   p_joint 1.975000e-04

Joint ci ratio: 2.535386e-01	ci left: 1.724988e-04	ci right 2.233326e-04	k: 238	n:1210000
Cons ci ratio: 3.346536e-02	ci left: 1.102472e-02	ci right 1.140076e-02	k: 13566	n:1210000
KS ci ratio: 1.825407e-02	ci left: 3.637802e-02	ci right 3.704899e-02	k: 44422	n:1210000
UBE2E2   1210000 perm   720 sec   (1679 perm/sec)   p_kst 3.671240e-02   p_cons 1.121157e-02   p_joint 1.966942e-04

Joint ci ratio: 2.524844e-01	ci left: 1.726203e-04	ci right 2.232451e-04	k: 240	n:1220000
Cons ci ratio: 3.331576e-02	ci left: 1.103352e-02	ci right 1.140815e-02	k: 13688	n:1220000
KS ci ratio: 1.818103e-02	ci left: 3.637194e-02	ci right 3.704009e-02	k: 44780	n:1220000
UBE2E2   1220000 perm   731 sec   (1668 perm/sec)   p_kst 3.670492e-02   p_cons 1.121967e-02   p_joint 1.967213e-04

Joint ci ratio: 2.514432e-01	ci left: 1.727402e-04	ci right 2.231586e-04	k: 242	n:1230000
Cons ci ratio: 3.318760e-02	ci left: 1.102928e-02	ci right 1.140229e-02	k: 13794	n:1230000
KS ci ratio: 1.810470e-02	ci left: 3.638216e-02	ci right 3.704766e-02	k: 45158	n:1230000
UBE2E2   1230000 perm   742 sec   (1657 perm/sec)   p_kst 3.671382e-02   p_cons 1.121463e-02   p_joint 1.967480e-04

Joint ci ratio: 2.488953e-01	ci left: 1.751267e-04	ci right 2.256434e-04	k: 247	n:1240000
Cons ci ratio: 3.304649e-02	ci left: 1.103471e-02	ci right 1.140629e-02	k: 13912	n:1240000
KS ci ratio: 1.803384e-02	ci left: 3.637456e-02	ci right 3.703729e-02	k: 45514	n:1240000
UBE2E2   1240000 perm   754 sec   (1645 perm/sec)   p_kst 3.670484e-02   p_cons 1.121935e-02   p_joint 1.991935e-04

Joint ci ratio: 2.488955e-01	ci left: 1.737257e-04	ci right 2.238383e-04	k: 247	n:1250000
Cons ci ratio: 3.290953e-02	ci left: 1.103847e-02	ci right 1.140860e-02	k: 14028	n:1250000
KS ci ratio: 1.795832e-02	ci left: 3.638858e-02	ci right 3.704877e-02	k: 45897	n:1250000
UBE2E2   1250000 perm   765 sec   (1634 perm/sec)   p_kst 3.671760e-02   p_cons 1.122240e-02   p_joint 1.976000e-04

Joint ci ratio: 2.474035e-01	ci left: 1.745798e-04	ci right 2.245905e-04	k: 250	n:1260000
Cons ci ratio: 3.276021e-02	ci left: 1.105162e-02	ci right 1.142048e-02	k: 14156	n:1260000
KS ci ratio: 1.788113e-02	ci left: 3.641267e-02	ci right 3.707042e-02	k: 46293	n:1260000
UBE2E2   1260000 perm   776 sec   (1623 perm/sec)   p_kst 3.674048e-02   p_cons 1.123492e-02   p_joint 1.984127e-04

Joint ci ratio: 2.454552e-01	ci left: 1.761603e-04	ci right 2.261657e-04	k: 254	n:1270000
Cons ci ratio: 3.261637e-02	ci left: 1.106222e-02	ci right 1.142978e-02	k: 14281	n:1270000
KS ci ratio: 1.780632e-02	ci left: 3.643089e-02	ci right 3.708619e-02	k: 46682	n:1270000
UBE2E2   1270000 perm   788 sec   (1612 perm/sec)   p_kst 3.675748e-02   p_cons 1.124488e-02   p_joint 2.000000e-04

Joint ci ratio: 2.435522e-01	ci left: 1.777176e-04	ci right 2.277149e-04	k: 258	n:1280000
Cons ci ratio: 3.248353e-02	ci left: 1.106646e-02	ci right 1.143264e-02	k: 14398	n:1280000
KS ci ratio: 1.773811e-02	ci left: 3.642627e-02	ci right 3.707895e-02	k: 47042	n:1280000
UBE2E2   1280000 perm   799 sec   (1602 perm/sec)   p_kst 3.675156e-02   p_cons 1.124844e-02   p_joint 2.015625e-04

Joint ci ratio: 2.430835e-01	ci left: 1.770679e-04	ci right 2.267720e-04	k: 259	n:1290000
Cons ci ratio: 3.236019e-02	ci left: 1.106525e-02	ci right 1.142997e-02	k: 14508	n:1290000
KS ci ratio: 1.766952e-02	ci left: 3.642636e-02	ci right 3.707650e-02	k: 47408	n:1290000
UBE2E2   1290000 perm   811 sec   (1591 perm/sec)   p_kst 3.675039e-02   p_cons 1.124651e-02   p_joint 2.007752e-04

Joint ci ratio: 1.837402e-01	ci left: 3.178461e-04	ci right 3.828754e-04	k: 454	n:1300000
Cons ci ratio: 3.221819e-02	ci left: 1.107780e-02	ci right 1.144131e-02	k: 14636	n:1300000
KS ci ratio: 1.760593e-02	ci left: 3.640960e-02	ci right 3.705708e-02	k: 47752	n:1300000
UBE2E2   1300000 perm   822 sec   (1581 perm/sec)   p_kst 3.673231e-02   p_cons 1.125846e-02   p_joint 3.492308e-04

Joint ci ratio: 1.833378e-01	ci left: 3.168763e-04	ci right 3.815495e-04	k: 456	n:1310000
Cons ci ratio: 3.210334e-02	ci left: 1.107274e-02	ci right 1.143477e-02	k: 14741	n:1310000
KS ci ratio: 1.754074e-02	ci left: 3.640223e-02	ci right 3.704715e-02	k: 48108	n:1310000
UBE2E2   1310000 perm   834 sec   (1571 perm/sec)   p_kst 3.672366e-02   p_cons 1.125267e-02   p_joint 3.480916e-04

Joint ci ratio: 2.407794e-01	ci left: 1.766019e-04	ci right 2.256352e-04	k: 264	n:1320000
Cons ci ratio: 3.197882e-02	ci left: 1.107528e-02	ci right 1.143596e-02	k: 14856	n:1320000
KS ci ratio: 1.747347e-02	ci left: 3.640629e-02	ci right 3.704878e-02	k: 48479	n:1320000
UBE2E2   1320000 perm   846 sec   (1561 perm/sec)   p_kst 3.672652e-02   p_cons 1.125455e-02   p_joint 2.000000e-04

Joint ci ratio: 2.403265e-01	ci left: 1.759806e-04	ci right 2.247358e-04	k: 265	n:1330000
Cons ci ratio: 3.184928e-02	ci left: 1.108226e-02	ci right 1.144168e-02	k: 14977	n:1330000
KS ci ratio: 1.741012e-02	ci left: 3.639756e-02	ci right 3.703754e-02	k: 48833	n:1330000
UBE2E2   1330000 perm   857 sec   (1551 perm/sec)   p_kst 3.671654e-02   p_cons 1.126090e-02   p_joint 1.992481e-04

Joint ci ratio: 2.389825e-01	ci left: 1.767717e-04	ci right 2.254316e-04	k: 268	n:1340000
Cons ci ratio: 3.172769e-02	ci left: 1.108470e-02	ci right 1.144279e-02	k: 15092	n:1340000
KS ci ratio: 1.734195e-02	ci left: 3.641126e-02	ci right 3.704896e-02	k: 49217	n:1340000
UBE2E2   1340000 perm   869 sec   (1542 perm/sec)   p_kst 3.672910e-02   p_cons 1.126269e-02   p_joint 2.000000e-04

Joint ci ratio: 2.385397e-01	ci left: 1.761587e-04	ci right 2.245467e-04	k: 269	n:1350000
Cons ci ratio: 3.160747e-02	ci left: 1.108710e-02	ci right 1.144389e-02	k: 15207	n:1350000
KS ci ratio: 1.726645e-02	ci left: 3.645796e-02	ci right 3.709366e-02	k: 49646	n:1350000
UBE2E2   1350000 perm   881 sec   (1532 perm/sec)   p_kst 3.677481e-02   p_cons 1.126444e-02   p_joint 1.992593e-04

Joint ci ratio: 2.376611e-01	ci left: 1.762463e-04	ci right 2.244538e-04	k: 271	n:1360000
Cons ci ratio: 3.151150e-02	ci left: 1.107342e-02	ci right 1.142867e-02	k: 15300	n:1360000
KS ci ratio: 1.720246e-02	ci left: 3.646077e-02	ci right 3.709415e-02	k: 50016	n:1360000
UBE2E2   1360000 perm   893 sec   (1523 perm/sec)   p_kst 3.677647e-02   p_cons 1.125000e-02   p_joint 1.992647e-04

Joint ci ratio: 2.367921e-01	ci left: 1.763329e-04	ci right 2.243619e-04	k: 273	n:1370000
Cons ci ratio: 3.138445e-02	ci left: 1.108239e-02	ci right 1.143647e-02	k: 15424	n:1370000
KS ci ratio: 1.713970e-02	ci left: 3.646137e-02	ci right 3.709242e-02	k: 50383	n:1370000
UBE2E2   1370000 perm   905 sec   (1513 perm/sec)   p_kst 3.677591e-02   p_cons 1.125839e-02   p_joint 1.992701e-04

Joint ci ratio: 2.350822e-01	ci left: 1.777824e-04	ci right 2.258057e-04	k: 277	n:1380000
Cons ci ratio: 3.128540e-02	ci left: 1.107254e-02	ci right 1.142517e-02	k: 15522	n:1380000
KS ci ratio: 1.708076e-02	ci left: 3.644897e-02	ci right 3.707762e-02	k: 50732	n:1380000
UBE2E2   1380000 perm   917 sec   (1504 perm/sec)   p_kst 3.676232e-02   p_cons 1.124783e-02   p_joint 2.007246e-04

Joint ci ratio: 2.350824e-01	ci left: 1.765033e-04	ci right 2.241812e-04	k: 277	n:1390000
Cons ci ratio: 3.118323e-02	ci left: 1.106569e-02	ci right 1.141693e-02	k: 15624	n:1390000
KS ci ratio: 1.702157e-02	ci left: 3.644033e-02	ci right 3.706663e-02	k: 51086	n:1390000
UBE2E2   1390000 perm   930 sec   (1495 perm/sec)   p_kst 3.675252e-02   p_cons 1.124029e-02   p_joint 1.992806e-04

Joint ci ratio: 2.342413e-01	ci left: 1.765872e-04	ci right 2.240923e-04	k: 279	n:1400000
Cons ci ratio: 3.106010e-02	ci left: 1.107453e-02	ci right 1.142464e-02	k: 15748	n:1400000
KS ci ratio: 1.696213e-02	ci left: 3.643538e-02	ci right 3.705939e-02	k: 51445	n:1400000
UBE2E2   1400000 perm   942 sec   (1486 perm/sec)   p_kst 3.674643e-02   p_cons 1.124857e-02   p_joint 1.992857e-04

Joint ci ratio: 2.334092e-01	ci left: 1.766701e-04	ci right 2.240044e-04	k: 281	n:1410000
Cons ci ratio: 3.094236e-02	ci left: 1.108044e-02	ci right 1.142938e-02	k: 15868	n:1410000
KS ci ratio: 1.690263e-02	ci left: 3.643333e-02	ci right 3.705510e-02	k: 51808	n:1410000
UBE2E2   1410000 perm   954 sec   (1477 perm/sec)   p_kst 3.674326e-02   p_cons 1.125390e-02   p_joint 1.992908e-04

Joint ci ratio: 2.317710e-01	ci left: 1.780788e-04	ci right 2.254076e-04	k: 285	n:1420000
Cons ci ratio: 3.082594e-02	ci left: 1.108626e-02	ci right 1.143405e-02	k: 15988	n:1420000
KS ci ratio: 1.684945e-02	ci left: 3.640747e-02	ci right 3.702682e-02	k: 52137	n:1420000
UBE2E2   1420000 perm   967 sec   (1469 perm/sec)   p_kst 3.671620e-02   p_cons 1.125915e-02   p_joint 2.007042e-04

Joint ci ratio: 2.317712e-01	ci left: 1.768335e-04	ci right 2.238313e-04	k: 285	n:1430000
Cons ci ratio: 3.072144e-02	ci left: 1.108437e-02	ci right 1.143090e-02	k: 16097	n:1430000
KS ci ratio: 1.678664e-02	ci left: 3.642445e-02	ci right 3.704176e-02	k: 52527	n:1430000
UBE2E2   1430000 perm   979 sec   (1461 perm/sec)   p_kst 3.673217e-02   p_cons 1.125664e-02   p_joint 1.993007e-04

Joint ci ratio: 2.305650e-01	ci left: 1.775681e-04	ci right 2.244807e-04	k: 288	n:1440000
Cons ci ratio: 3.060654e-02	ci left: 1.109078e-02	ci right 1.143619e-02	k: 16218	n:1440000
KS ci ratio: 1.672732e-02	ci left: 3.642945e-02	ci right 3.704464e-02	k: 52900	n:1440000
UBE2E2   1440000 perm   992 sec   (1452 perm/sec)   p_kst 3.673611e-02   p_cons 1.126250e-02   p_joint 2.000000e-04

Joint ci ratio: 2.289856e-01	ci left: 1.789434e-04	ci right 2.258497e-04	k: 292	n:1450000
Cons ci ratio: 3.049197e-02	ci left: 1.109779e-02	ci right 1.144210e-02	k: 16340	n:1450000
KS ci ratio: 1.666733e-02	ci left: 3.643988e-02	ci right 3.705301e-02	k: 53281	n:1450000
UBE2E2   1450000 perm   1005 sec   (1443 perm/sec)   p_kst 3.674552e-02   p_cons 1.126897e-02   p_joint 2.013793e-04

Joint ci ratio: 2.274383e-01	ci left: 1.803009e-04	ci right 2.271988e-04	k: 296	n:1460000
Cons ci ratio: 3.037868e-02	ci left: 1.110470e-02	ci right 1.144793e-02	k: 16462	n:1460000
KS ci ratio: 1.661023e-02	ci left: 3.644061e-02	ci right 3.705164e-02	k: 53648	n:1460000
UBE2E2   1460000 perm   1017 sec   (1435 perm/sec)   p_kst 3.674521e-02   p_cons 1.127534e-02   p_joint 2.027397e-04

Joint ci ratio: 2.274384e-01	ci left: 1.790743e-04	ci right 2.256533e-04	k: 296	n:1470000
Cons ci ratio: 3.028790e-02	ci left: 1.109600e-02	ci right 1.143791e-02	k: 16561	n:1470000
KS ci ratio: 1.655116e-02	ci left: 3.645218e-02	ci right 3.706121e-02	k: 54031	n:1470000
UBE2E2   1470000 perm   1030 sec   (1427 perm/sec)   p_kst 3.675578e-02   p_cons 1.126599e-02   p_joint 2.013605e-04

Joint ci ratio: 2.262983e-01	ci left: 1.797762e-04	ci right 2.262706e-04	k: 299	n:1480000
Cons ci ratio: 3.018418e-02	ci left: 1.109747e-02	ci right 1.143823e-02	k: 16675	n:1480000
KS ci ratio: 1.649477e-02	ci left: 3.645485e-02	ci right 3.706183e-02	k: 54401	n:1480000
UBE2E2   1480000 perm   1043 sec   (1419 perm/sec)   p_kst 3.675743e-02   p_cons 1.126689e-02   p_joint 2.020270e-04

Joint ci ratio: 2.259221e-01	ci left: 1.792028e-04	ci right 2.254611e-04	k: 300	n:1490000
Cons ci ratio: 3.009058e-02	ci left: 1.109226e-02	ci right 1.143179e-02	k: 16779	n:1490000
KS ci ratio: 1.643723e-02	ci left: 3.646484e-02	ci right 3.706985e-02	k: 54782	n:1490000
UBE2E2   1490000 perm   1056 sec   (1411 perm/sec)   p_kst 3.676644e-02   p_cons 1.126107e-02   p_joint 2.013423e-04

Joint ci ratio: 2.255479e-01	ci left: 1.786371e-04	ci right 2.246624e-04	k: 301	n:1500000
Cons ci ratio: 2.999516e-02	ci left: 1.108911e-02	ci right 1.142745e-02	k: 16886	n:1500000
KS ci ratio: 1.637860e-02	ci left: 3.648201e-02	ci right 3.708512e-02	k: 55174	n:1500000
UBE2E2   1500000 perm   1070 sec   (1403 perm/sec)   p_kst 3.678267e-02   p_cons 1.125733e-02   p_joint 2.006667e-04

Joint ci ratio: 2.248047e-01	ci left: 1.787038e-04	ci right 2.245736e-04	k: 303	n:1510000
Cons ci ratio: 2.990954e-02	ci left: 1.107943e-02	ci right 1.141649e-02	k: 16983	n:1510000
KS ci ratio: 1.632166e-02	ci left: 3.649433e-02	ci right 3.709553e-02	k: 55559	n:1510000
UBE2E2   1510000 perm   1083 sec   (1395 perm/sec)   p_kst 3.679404e-02   p_cons 1.124702e-02   p_joint 2.006623e-04

Joint ci ratio: 2.244360e-01	ci left: 1.781490e-04	ci right 2.237910e-04	k: 304	n:1520000
Cons ci ratio: 2.981229e-02	ci left: 1.107902e-02	ci right 1.141495e-02	k: 17094	n:1520000
KS ci ratio: 1.626319e-02	ci left: 3.651567e-02	ci right 3.711504e-02	k: 55958	n:1520000
UBE2E2   1520000 perm   1096 sec   (1387 perm/sec)   p_kst 3.681447e-02   p_cons 1.124605e-02   p_joint 2.000000e-04

Joint ci ratio: 2.240690e-01	ci left: 1.776015e-04	ci right 2.230186e-04	k: 305	n:1530000
Cons ci ratio: 2.972210e-02	ci left: 1.107407e-02	ci right 1.140883e-02	k: 17198	n:1530000
KS ci ratio: 1.621177e-02	ci left: 3.650874e-02	ci right 3.710609e-02	k: 56314	n:1530000
UBE2E2   1530000 perm   1110 sec   (1379 perm/sec)   p_kst 3.680654e-02   p_cons 1.124052e-02   p_joint 1.993464e-04

Joint ci ratio: 2.237038e-01	ci left: 1.770612e-04	ci right 2.222561e-04	k: 306	n:1540000
Cons ci ratio: 2.963186e-02	ci left: 1.106984e-02	ci right 1.140343e-02	k: 17303	n:1540000
KS ci ratio: 1.616217e-02	ci left: 3.649608e-02	ci right 3.709138e-02	k: 56661	n:1540000
UBE2E2   1540000 perm   1123 sec   (1371 perm/sec)   p_kst 3.679286e-02   p_cons 1.123571e-02   p_joint 1.987013e-04

Joint ci ratio: 2.229787e-01	ci left: 1.771370e-04	ci right 2.221846e-04	k: 308	n:1550000
Cons ci ratio: 2.953386e-02	ci left: 1.107207e-02	ci right 1.140460e-02	k: 17418	n:1550000
KS ci ratio: 1.610598e-02	ci left: 3.651444e-02	ci right 3.710794e-02	k: 57056	n:1550000
UBE2E2   1550000 perm   1137 sec   (1364 perm/sec)   p_kst 3.681032e-02   p_cons 1.123742e-02   p_joint 1.987097e-04

Joint ci ratio: 2.222606e-01	ci left: 1.772121e-04	ci right 2.221138e-04	k: 310	n:1560000
Cons ci ratio: 2.944022e-02	ci left: 1.107172e-02	ci right 1.140317e-02	k: 17529	n:1560000
KS ci ratio: 1.605415e-02	ci left: 3.651596e-02	ci right 3.710756e-02	k: 57425	n:1560000
UBE2E2   1560000 perm   1150 sec   (1356 perm/sec)   p_kst 3.681090e-02   p_cons 1.123654e-02   p_joint 1.987179e-04

Joint ci ratio: 2.222607e-01	ci left: 1.760833e-04	ci right 2.206990e-04	k: 310	n:1570000
Cons ci ratio: 2.935251e-02	ci left: 1.106759e-02	ci right 1.139791e-02	k: 17634	n:1570000
KS ci ratio: 1.600497e-02	ci left: 3.650794e-02	ci right 3.709759e-02	k: 57779	n:1570000
UBE2E2   1570000 perm   1164 sec   (1349 perm/sec)   p_kst 3.680191e-02   p_cons 1.123185e-02   p_joint 1.974522e-04

Joint ci ratio: 2.219043e-01	ci left: 1.755666e-04	ci right 2.199703e-04	k: 311	n:1580000
Cons ci ratio: 2.926142e-02	ci left: 1.106665e-02	ci right 1.139591e-02	k: 17744	n:1580000
KS ci ratio: 1.595823e-02	ci left: 3.649121e-02	ci right 3.707885e-02	k: 58119	n:1580000
UBE2E2   1580000 perm   1178 sec   (1341 perm/sec)   p_kst 3.678418e-02   p_cons 1.123038e-02   p_joint 1.968354e-04

Joint ci ratio: 2.211965e-01	ci left: 1.756505e-04	ci right 2.199144e-04	k: 313	n:1590000
Cons ci ratio: 2.917529e-02	ci left: 1.106260e-02	ci right 1.139075e-02	k: 17849	n:1590000
KS ci ratio: 1.590710e-02	ci left: 3.649599e-02	ci right 3.708180e-02	k: 58493	n:1590000
UBE2E2   1590000 perm   1192 sec   (1334 perm/sec)   p_kst 3.678805e-02   p_cons 1.122579e-02   p_joint 1.968553e-04

Joint ci ratio: 2.208452e-01	ci left: 1.751430e-04	ci right 2.191995e-04	k: 314	n:1600000
Cons ci ratio: 2.907029e-02	ci left: 1.107350e-02	ci right 1.140077e-02	k: 17978	n:1600000
KS ci ratio: 1.585856e-02	ci left: 3.649137e-02	ci right 3.707531e-02	k: 58852	n:1600000
UBE2E2   1600000 perm   1206 sec   (1327 perm/sec)   p_kst 3.678250e-02   p_cons 1.123625e-02   p_joint 1.962500e-04

Joint ci ratio: 2.194561e-01	ci left: 1.764027e-04	ci right 2.204592e-04	k: 318	n:1610000
Cons ci ratio: 2.899638e-02	ci left: 1.106145e-02	ci right 1.138752e-02	k: 18070	n:1610000
KS ci ratio: 1.580367e-02	ci left: 3.651713e-02	ci right 3.709944e-02	k: 59260	n:1610000
UBE2E2   1610000 perm   1220 sec   (1320 perm/sec)   p_kst 3.680745e-02   p_cons 1.122360e-02   p_joint 1.975155e-04

Joint ci ratio: 2.187713e-01	ci left: 1.764806e-04	ci right 2.204006e-04	k: 320	n:1620000
Cons ci ratio: 2.890453e-02	ci left: 1.106364e-02	ci right 1.138873e-02	k: 18185	n:1620000
KS ci ratio: 1.575853e-02	ci left: 3.650138e-02	ci right 3.708176e-02	k: 59601	n:1620000
UBE2E2   1620000 perm   1233 sec   (1314 perm/sec)   p_kst 3.679074e-02   p_cons 1.122531e-02   p_joint 1.975309e-04

Joint ci ratio: 2.180930e-01	ci left: 1.765578e-04	ci right 2.203424e-04	k: 322	n:1630000
Cons ci ratio: 2.882071e-02	ci left: 1.106033e-02	ci right 1.138436e-02	k: 18291	n:1630000
KS ci ratio: 1.571187e-02	ci left: 3.649438e-02	ci right 3.707291e-02	k: 59956	n:1630000
UBE2E2   1630000 perm   1248 sec   (1307 perm/sec)   p_kst 3.678282e-02   p_cons 1.122147e-02   p_joint 1.975460e-04

Joint ci ratio: 2.180931e-01	ci left: 1.754812e-04	ci right 2.189989e-04	k: 322	n:1640000
Cons ci ratio: 2.873999e-02	ci left: 1.105524e-02	ci right 1.137820e-02	k: 18394	n:1640000
KS ci ratio: 1.566320e-02	ci left: 3.649840e-02	ci right 3.707519e-02	k: 60329	n:1640000
UBE2E2   1640000 perm   1261 sec   (1300 perm/sec)   p_kst 3.678598e-02   p_cons 1.121585e-02   p_joint 1.963415e-04

Joint ci ratio: 2.170872e-01	ci left: 1.761368e-04	ci right 2.195887e-04	k: 325	n:1650000
Cons ci ratio: 2.864507e-02	ci left: 1.106165e-02	ci right 1.138371e-02	k: 18516	n:1650000
KS ci ratio: 1.561832e-02	ci left: 3.648728e-02	ci right 3.706223e-02	k: 60677	n:1650000
UBE2E2   1650000 perm   1275 sec   (1294 perm/sec)   p_kst 3.677394e-02   p_cons 1.122182e-02   p_joint 1.969697e-04

Joint ci ratio: 2.167551e-01	ci left: 1.756454e-04	ci right 2.189010e-04	k: 326	n:1660000
Cons ci ratio: 2.855961e-02	ci left: 1.106140e-02	ci right 1.138248e-02	k: 18627	n:1660000
KS ci ratio: 1.557263e-02	ci left: 3.648170e-02	ci right 3.705486e-02	k: 61034	n:1660000
UBE2E2   1660000 perm   1290 sec   (1287 perm/sec)   p_kst 3.676747e-02   p_cons 1.122108e-02   p_joint 1.963855e-04

Joint ci ratio: 2.167552e-01	ci left: 1.745936e-04	ci right 2.175902e-04	k: 326	n:1670000
Cons ci ratio: 2.848414e-02	ci left: 1.105402e-02	ci right 1.137402e-02	k: 18726	n:1670000
KS ci ratio: 1.553088e-02	ci left: 3.646008e-02	ci right 3.703135e-02	k: 61364	n:1670000
UBE2E2   1670000 perm   1304 sec   (1280 perm/sec)   p_kst 3.674491e-02   p_cons 1.121317e-02   p_joint 1.952096e-04

Joint ci ratio: 2.164246e-01	ci left: 1.741173e-04	ci right 2.169225e-04	k: 327	n:1680000
Cons ci ratio: 2.840849e-02	ci left: 1.104732e-02	ci right 1.136627e-02	k: 18826	n:1680000
KS ci ratio: 1.548725e-02	ci left: 3.644880e-02	ci right 3.701828e-02	k: 61711	n:1680000
UBE2E2   1680000 perm   1319 sec   (1274 perm/sec)   p_kst 3.673274e-02   p_cons 1.120595e-02   p_joint 1.946429e-04

Joint ci ratio: 2.157678e-01	ci left: 1.742064e-04	ci right 2.168863e-04	k: 329	n:1690000
Cons ci ratio: 2.832588e-02	ci left: 1.104658e-02	ci right 1.136456e-02	k: 18936	n:1690000
KS ci ratio: 1.544360e-02	ci left: 3.643942e-02	ci right 3.700714e-02	k: 62061	n:1690000
UBE2E2   1690000 perm   1333 sec   (1268 perm/sec)   p_kst 3.672249e-02   p_cons 1.120473e-02   p_joint 1.946746e-04

Joint ci ratio: 2.151169e-01	ci left: 1.742947e-04	ci right 2.168504e-04	k: 331	n:1700000
Cons ci ratio: 2.823799e-02	ci left: 1.105052e-02	ci right 1.136762e-02	k: 19054	n:1700000
KS ci ratio: 1.539558e-02	ci left: 3.645184e-02	ci right 3.701797e-02	k: 62448	n:1700000
UBE2E2   1700000 perm   1348 sec   (1261 perm/sec)   p_kst 3.673412e-02   p_cons 1.120824e-02   p_joint 1.947059e-04

Joint ci ratio: 2.141514e-01	ci left: 1.749355e-04	ci right 2.174308e-04	k: 334	n:1710000
Cons ci ratio: 2.816131e-02	ci left: 1.104629e-02	ci right 1.136239e-02	k: 19158	n:1710000
KS ci ratio: 1.535055e-02	ci left: 3.645247e-02	ci right 3.701694e-02	k: 62815	n:1710000
UBE2E2   1710000 perm   1363 sec   (1255 perm/sec)   p_kst 3.673392e-02   p_cons 1.120351e-02   p_joint 1.953216e-04

Joint ci ratio: 2.138326e-01	ci left: 1.744686e-04	ci right 2.167792e-04	k: 335	n:1720000
Cons ci ratio: 2.807346e-02	ci left: 1.105135e-02	ci right 1.136658e-02	k: 19278	n:1720000
KS ci ratio: 1.530653e-02	ci left: 3.645020e-02	ci right 3.701299e-02	k: 63177	n:1720000
UBE2E2   1720000 perm   1377 sec   (1249 perm/sec)   p_kst 3.673081e-02   p_cons 1.120814e-02   p_joint 1.947674e-04

Joint ci ratio: 2.131990e-01	ci left: 1.745544e-04	ci right 2.167439e-04	k: 337	n:1730000
Cons ci ratio: 2.797331e-02	ci left: 1.106668e-02	ci right 1.138121e-02	k: 19416	n:1730000
KS ci ratio: 1.526027e-02	ci left: 3.646004e-02	ci right 3.702128e-02	k: 63560	n:1730000
UBE2E2   1730000 perm   1392 sec   (1243 perm/sec)   p_kst 3.673988e-02   p_cons 1.122312e-02   p_joint 1.947977e-04

Joint ci ratio: 2.128844e-01	ci left: 1.740953e-04	ci right 2.161036e-04	k: 338	n:1740000
Cons ci ratio: 2.787350e-02	ci left: 1.108240e-02	ci right 1.139624e-02	k: 19555	n:1740000
KS ci ratio: 1.521529e-02	ci left: 3.646577e-02	ci right 3.702543e-02	k: 63936	n:1740000
UBE2E2   1740000 perm   1407 sec   (1237 perm/sec)   p_kst 3.674483e-02   p_cons 1.123851e-02   p_joint 1.942529e-04

Joint ci ratio: 2.119485e-01	ci left: 1.747235e-04	ci right 2.166741e-04	k: 341	n:1750000
Cons ci ratio: 2.779903e-02	ci left: 1.107866e-02	ci right 1.139154e-02	k: 19660	n:1750000
KS ci ratio: 1.516839e-02	ci left: 3.648226e-02	ci right 3.704042e-02	k: 64331	n:1750000
UBE2E2   1750000 perm   1422 sec   (1231 perm/sec)   p_kst 3.676057e-02   p_cons 1.123429e-02   p_joint 1.948571e-04

Joint ci ratio: 2.116394e-01	ci left: 1.742688e-04	ci right 2.160412e-04	k: 342	n:1760000
Cons ci ratio: 2.771240e-02	ci left: 1.108511e-02	ci right 1.139718e-02	k: 19783	n:1760000
KS ci ratio: 1.512434e-02	ci left: 3.648723e-02	ci right 3.704384e-02	k: 64706	n:1760000
UBE2E2   1760000 perm   1437 sec   (1225 perm/sec)   p_kst 3.676477e-02   p_cons 1.124034e-02   p_joint 1.943182e-04

Joint ci ratio: 2.113316e-01	ci left: 1.738193e-04	ci right 2.154155e-04	k: 343	n:1770000
Cons ci ratio: 2.763429e-02	ci left: 1.108532e-02	ci right 1.139651e-02	k: 19895	n:1770000
KS ci ratio: 1.507850e-02	ci left: 3.650229e-02	ci right 3.705742e-02	k: 65099	n:1770000
UBE2E2   1770000 perm   1452 sec   (1219 perm/sec)   p_kst 3.677910e-02   p_cons 1.124011e-02   p_joint 1.937853e-04

Joint ci ratio: 2.107200e-01	ci left: 1.739070e-04	ci right 2.153882e-04	k: 345	n:1780000
Cons ci ratio: 2.754431e-02	ci left: 1.109558e-02	ci right 1.140602e-02	k: 20025	n:1780000
KS ci ratio: 1.503583e-02	ci left: 3.650430e-02	ci right 3.705788e-02	k: 65469	n:1780000
UBE2E2   1780000 perm   1468 sec   (1213 perm/sec)   p_kst 3.678034e-02   p_cons 1.125000e-02   p_joint 1.938202e-04

Joint ci ratio: 2.101136e-01	ci left: 1.739939e-04	ci right 2.153610e-04	k: 347	n:1790000
Cons ci ratio: 2.746072e-02	ci left: 1.110128e-02	ci right 1.141092e-02	k: 20147	n:1790000
KS ci ratio: 1.499741e-02	ci left: 3.648793e-02	ci right 3.703983e-02	k: 65806	n:1790000
UBE2E2   1790000 perm   1483 sec   (1207 perm/sec)   p_kst 3.676313e-02   p_cons 1.125531e-02   p_joint 1.938547e-04

Joint ci ratio: 2.098124e-01	ci left: 1.735536e-04	ci right 2.147493e-04	k: 348	n:1800000
Cons ci ratio: 2.739361e-02	ci left: 1.109423e-02	ci right 1.140290e-02	k: 20246	n:1800000
KS ci ratio: 1.495483e-02	ci left: 3.649277e-02	ci right 3.704317e-02	k: 66181	n:1800000
UBE2E2   1800000 perm   1499 sec   (1201 perm/sec)   p_kst 3.676722e-02   p_cons 1.124778e-02   p_joint 1.933333e-04

Joint ci ratio: 2.095125e-01	ci left: 1.731182e-04	ci right 2.141443e-04	k: 349	n:1810000
Cons ci ratio: 2.731612e-02	ci left: 1.109603e-02	ci right 1.140387e-02	k: 20361	n:1810000
KS ci ratio: 1.491354e-02	ci left: 3.649316e-02	ci right 3.704203e-02	k: 66548	n:1810000
UBE2E2   1810000 perm   1514 sec   (1195 perm/sec)   p_kst 3.676685e-02   p_cons 1.124917e-02   p_joint 1.928177e-04

Joint ci ratio: 2.089164e-01	ci left: 1.732084e-04	ci right 2.141241e-04	k: 351	n:1820000
Cons ci ratio: 2.724939e-02	ci left: 1.108964e-02	ci right 1.139654e-02	k: 20461	n:1820000
KS ci ratio: 1.487086e-02	ci left: 3.650175e-02	ci right 3.704917e-02	k: 66930	n:1820000
UBE2E2   1820000 perm   1530 sec   (1190 perm/sec)   p_kst 3.677473e-02   p_cons 1.124231e-02   p_joint 1.928571e-04

Joint ci ratio: 2.083254e-01	ci left: 1.732977e-04	ci right 2.141039e-04	k: 353	n:1830000
Cons ci ratio: 2.717178e-02	ci left: 1.109254e-02	ci right 1.139863e-02	k: 20578	n:1830000
KS ci ratio: 1.482855e-02	ci left: 3.651026e-02	ci right 3.705623e-02	k: 67312	n:1830000
UBE2E2   1830000 perm   1545 sec   (1184 perm/sec)   p_kst 3.678251e-02   p_cons 1.124481e-02   p_joint 1.928962e-04

Joint ci ratio: 2.071582e-01	ci left: 1.744167e-04	ci right 2.152271e-04	k: 357	n:1840000
Cons ci ratio: 2.710411e-02	ci left: 1.108785e-02	ci right 1.139304e-02	k: 20681	n:1840000
KS ci ratio: 1.478750e-02	ci left: 3.651434e-02	ci right 3.705885e-02	k: 67686	n:1840000
UBE2E2   1840000 perm   1561 sec   (1179 perm/sec)   p_kst 3.678587e-02   p_cons 1.123967e-02   p_joint 1.940217e-04

Joint ci ratio: 2.062956e-01	ci left: 1.750116e-04	ci right 2.157692e-04	k: 360	n:1850000
Cons ci ratio: 2.703430e-02	ci left: 1.108536e-02	ci right 1.138968e-02	k: 20788	n:1850000
KS ci ratio: 1.474768e-02	ci left: 3.651408e-02	ci right 3.705710e-02	k: 68052	n:1850000
UBE2E2   1850000 perm   1577 sec   (1173 perm/sec)   p_kst 3.678486e-02   p_cons 1.123676e-02   p_joint 1.945946e-04

Joint ci ratio: 2.057265e-01	ci left: 1.750904e-04	ci right 2.157398e-04	k: 362	n:1860000
Cons ci ratio: 2.696634e-02	ci left: 1.108183e-02	ci right 1.138528e-02	k: 20893	n:1860000
KS ci ratio: 1.470429e-02	ci left: 3.653256e-02	ci right 3.707425e-02	k: 68453	n:1860000
UBE2E2   1860000 perm   1593 sec   (1168 perm/sec)   p_kst 3.680269e-02   p_cons 1.123280e-02   p_joint 1.946237e-04

Joint ci ratio: 2.051621e-01	ci left: 1.751686e-04	ci right 2.157106e-04	k: 364	n:1870000
Cons ci ratio: 2.689112e-02	ci left: 1.108472e-02	ci right 1.138739e-02	k: 21010	n:1870000
KS ci ratio: 1.466404e-02	ci left: 3.653754e-02	ci right 3.707780e-02	k: 68829	n:1870000
UBE2E2   1870000 perm   1609 sec   (1163 perm/sec)   p_kst 3.680695e-02   p_cons 1.123529e-02   p_joint 1.946524e-04

Joint ci ratio: 2.046023e-01	ci left: 1.752461e-04	ci right 2.156815e-04	k: 366	n:1880000
Cons ci ratio: 2.682167e-02	ci left: 1.108335e-02	ci right 1.138518e-02	k: 21119	n:1880000
KS ci ratio: 1.462522e-02	ci left: 3.653715e-02	ci right 3.707598e-02	k: 69195	n:1880000
UBE2E2   1880000 perm   1624 sec   (1157 perm/sec)   p_kst 3.680585e-02   p_cons 1.123351e-02   p_joint 1.946809e-04

Joint ci ratio: 2.032225e-01	ci left: 1.768294e-04	ci right 2.173207e-04	k: 371	n:1890000
Cons ci ratio: 2.674574e-02	ci left: 1.108777e-02	ci right 1.138886e-02	k: 21239	n:1890000
KS ci ratio: 1.458615e-02	ci left: 3.653942e-02	ci right 3.707682e-02	k: 69566	n:1890000
UBE2E2   1890000 perm   1640 sec   (1152 perm/sec)   p_kst 3.680741e-02   p_cons 1.123757e-02   p_joint 1.962963e-04

Joint ci ratio: 2.026784e-01	ci left: 1.768978e-04	ci right 2.172830e-04	k: 373	n:1900000
Cons ci ratio: 2.666919e-02	ci left: 1.109320e-02	ci right 1.139356e-02	k: 21361	n:1900000
KS ci ratio: 1.454859e-02	ci left: 3.653589e-02	ci right 3.707184e-02	k: 69926	n:1900000
UBE2E2   1900000 perm   1656 sec   (1147 perm/sec)   p_kst 3.680316e-02   p_cons 1.124263e-02   p_joint 1.963158e-04

Joint ci ratio: 2.024080e-01	ci left: 1.764687e-04	ci right 2.166955e-04	k: 374	n:1910000
Cons ci ratio: 2.659078e-02	ci left: 1.110065e-02	ci right 1.140031e-02	k: 21487	n:1910000
KS ci ratio: 1.450842e-02	ci left: 3.654648e-02	ci right 3.708110e-02	k: 70313	n:1910000
UBE2E2   1910000 perm   1673 sec   (1142 perm/sec)   p_kst 3.681309e-02   p_cons 1.124974e-02   p_joint 1.958115e-04

Joint ci ratio: 2.018704e-01	ci left: 1.765385e-04	ci right 2.166611e-04	k: 376	n:1920000
Cons ci ratio: 2.652611e-02	ci left: 1.109716e-02	ci right 1.139599e-02	k: 21592	n:1920000
KS ci ratio: 1.447369e-02	ci left: 3.653206e-02	ci right 3.706517e-02	k: 70652	n:1920000
UBE2E2   1920000 perm   1689 sec   (1137 perm/sec)   p_kst 3.679792e-02   p_cons 1.124583e-02   p_joint 1.958333e-04

Joint ci ratio: 2.016032e-01	ci left: 1.761157e-04	ci right 2.160828e-04	k: 377	n:1930000
Cons ci ratio: 2.645512e-02	ci left: 1.109936e-02	ci right 1.139744e-02	k: 21708	n:1930000
KS ci ratio: 1.443857e-02	ci left: 3.652088e-02	ci right 3.705253e-02	k: 70997	n:1930000
UBE2E2   1930000 perm   1705 sec   (1132 perm/sec)   p_kst 3.678601e-02   p_cons 1.124767e-02   p_joint 1.953368e-04

Joint ci ratio: 2.010720e-01	ci left: 1.761869e-04	ci right 2.160518e-04	k: 379	n:1940000
Cons ci ratio: 2.639142e-02	ci left: 1.109592e-02	ci right 1.139317e-02	k: 21813	n:1940000
KS ci ratio: 1.440423e-02	ci left: 3.650725e-02	ci right 3.703743e-02	k: 71337	n:1940000
UBE2E2   1940000 perm   1722 sec   (1127 perm/sec)   p_kst 3.677165e-02   p_cons 1.124381e-02   p_joint 1.953608e-04

Joint ci ratio: 2.010721e-01	ci left: 1.752834e-04	ci right 2.149439e-04	k: 379	n:1950000
Cons ci ratio: 2.631605e-02	ci left: 1.110269e-02	ci right 1.139927e-02	k: 21938	n:1950000
KS ci ratio: 1.436680e-02	ci left: 3.651012e-02	ci right 3.703895e-02	k: 71709	n:1950000
UBE2E2   1950000 perm   1738 sec   (1122 perm/sec)   p_kst 3.677385e-02   p_cons 1.125026e-02   p_joint 1.943590e-04

Joint ci ratio: 2.008081e-01	ci left: 1.748736e-04	ci right 2.143831e-04	k: 380	n:1960000
Cons ci ratio: 2.624672e-02	ci left: 1.110484e-02	ci right 1.140069e-02	k: 22054	n:1960000
KS ci ratio: 1.432853e-02	ci left: 3.651855e-02	ci right 3.704608e-02	k: 72092	n:1960000
UBE2E2   1960000 perm   1755 sec   (1117 perm/sec)   p_kst 3.678163e-02   p_cons 1.125204e-02   p_joint 1.938776e-04

Joint ci ratio: 2.005452e-01	ci left: 1.744680e-04	ci right 2.138279e-04	k: 381	n:1970000
Cons ci ratio: 2.618332e-02	ci left: 1.110243e-02	ci right 1.139748e-02	k: 22161	n:1970000
KS ci ratio: 1.429046e-02	ci left: 3.652741e-02	ci right 3.705365e-02	k: 72476	n:1970000
UBE2E2   1970000 perm   1771 sec   (1112 perm/sec)   p_kst 3.678985e-02   p_cons 1.124924e-02   p_joint 1.934010e-04

Joint ci ratio: 2.002832e-01	ci left: 1.740666e-04	ci right 2.132784e-04	k: 382	n:1980000
Cons ci ratio: 2.612157e-02	ci left: 1.109904e-02	ci right 1.139330e-02	k: 22266	n:1980000
KS ci ratio: 1.425493e-02	ci left: 3.652510e-02	ci right 3.704999e-02	k: 72838	n:1980000
UBE2E2   1980000 perm   1788 sec   (1107 perm/sec)   p_kst 3.678687e-02   p_cons 1.124545e-02   p_joint 1.929293e-04

Joint ci ratio: 2.002833e-01	ci left: 1.731918e-04	ci right 2.122066e-04	k: 382	n:1990000
Cons ci ratio: 2.605730e-02	ci left: 1.109818e-02	ci right 1.139168e-02	k: 22376	n:1990000
KS ci ratio: 1.421946e-02	ci left: 3.652382e-02	ci right 3.704738e-02	k: 73202	n:1990000
UBE2E2   1990000 perm   1805 sec   (1103 perm/sec)   p_kst 3.678492e-02   p_cons 1.124422e-02   p_joint 1.919598e-04

Joint ci ratio: 1.987325e-01	ci left: 1.751760e-04	ci right 2.142952e-04	k: 388	n:2000000
Cons ci ratio: 2.599468e-02	ci left: 1.109634e-02	ci right 1.138908e-02	k: 22484	n:2000000
KS ci ratio: 1.418205e-02	ci left: 3.653352e-02	ci right 3.705583e-02	k: 73588	n:2000000
UBE2E2   2000000 perm   1822 sec   (1098 perm/sec)   p_kst 3.679400e-02   p_cons 1.124200e-02   p_joint 1.940000e-04

Joint ci ratio: 1.982236e-01	ci left: 1.752501e-04	ci right 2.142735e-04	k: 390	n:2010000
Cons ci ratio: 2.591337e-02	ci left: 1.111083e-02	ci right 1.140302e-02	k: 22625	n:2010000
KS ci ratio: 1.414732e-02	ci left: 3.653122e-02	ci right 3.705221e-02	k: 73950	n:2010000
UBE2E2   2010000 perm   1839 sec   (1093 perm/sec)   p_kst 3.679104e-02   p_cons 1.125622e-02   p_joint 1.940299e-04

Joint ci ratio: 1.969681e-01	ci left: 1.767353e-04	ci right 2.158103e-04	k: 395	n:2020000
Cons ci ratio: 2.584315e-02	ci left: 1.111632e-02	ci right 1.140785e-02	k: 22748	n:2020000
KS ci ratio: 1.411097e-02	ci left: 3.653832e-02	ci right 3.705806e-02	k: 74331	n:2020000
UBE2E2   2020000 perm   1856 sec   (1088 perm/sec)   p_kst 3.679752e-02   p_cons 1.126139e-02   p_joint 1.955446e-04

Joint ci ratio: 1.967199e-01	ci left: 1.763331e-04	ci right 2.152640e-04	k: 396	n:2030000
Cons ci ratio: 2.577122e-02	ci left: 1.112372e-02	ci right 1.141462e-02	k: 22875	n:2030000
KS ci ratio: 1.407421e-02	ci left: 3.654879e-02	ci right 3.706731e-02	k: 74719	n:2030000
UBE2E2   2030000 perm   1873 sec   (1084 perm/sec)   p_kst 3.680739e-02   p_cons 1.126847e-02   p_joint 1.950739e-04

Joint ci ratio: 1.967200e-01	ci left: 1.754687e-04	ci right 2.142088e-04	k: 396	n:2040000
Cons ci ratio: 2.570498e-02	ci left: 1.112667e-02	ci right 1.141688e-02	k: 22993	n:2040000
KS ci ratio: 1.404123e-02	ci left: 3.654157e-02	ci right 3.705877e-02	k: 75071	n:2040000
UBE2E2   2040000 perm   1891 sec   (1079 perm/sec)   p_kst 3.679951e-02   p_cons 1.127108e-02   p_joint 1.941176e-04

Joint ci ratio: 1.962263e-01	ci left: 1.755403e-04	ci right 2.141874e-04	k: 398	n:2050000
Cons ci ratio: 2.563195e-02	ci left: 1.113588e-02	ci right 1.142550e-02	k: 23124	n:2050000
KS ci ratio: 1.400704e-02	ci left: 3.654172e-02	ci right 3.705764e-02	k: 75438	n:2050000
UBE2E2   2050000 perm   1908 sec   (1074 perm/sec)   p_kst 3.679902e-02   p_cons 1.128000e-02   p_joint 1.941463e-04

Joint ci ratio: 1.954927e-01	ci left: 1.760731e-04	ci right 2.146753e-04	k: 401	n:2060000
Cons ci ratio: 2.557456e-02	ci left: 1.113199e-02	ci right 1.142085e-02	k: 23228	n:2060000
KS ci ratio: 1.397157e-02	ci left: 3.654960e-02	ci right 3.706432e-02	k: 75821	n:2060000
UBE2E2   2060000 perm   1926 sec   (1070 perm/sec)   p_kst 3.680631e-02   p_cons 1.127573e-02   p_joint 1.946602e-04

Joint ci ratio: 1.950082e-01	ci left: 1.761415e-04	ci right 2.146516e-04	k: 403	n:2070000
Cons ci ratio: 2.549271e-02	ci left: 1.114973e-02	ci right 1.143811e-02	k: 23377	n:2070000
KS ci ratio: 1.393569e-02	ci left: 3.656078e-02	ci right 3.707433e-02	k: 76211	n:2070000
UBE2E2   2070000 perm   1943 sec   (1065 perm/sec)   p_kst 3.681691e-02   p_cons 1.129324e-02   p_joint 1.946860e-04

Joint ci ratio: 1.942881e-01	ci left: 1.766667e-04	ci right 2.151321e-04	k: 406	n:2080000
Cons ci ratio: 2.543460e-02	ci left: 1.114724e-02	ci right 1.143489e-02	k: 23484	n:2080000
KS ci ratio: 1.390302e-02	ci left: 3.655701e-02	ci right 3.706929e-02	k: 76570	n:2080000
UBE2E2   2080000 perm   1961 sec   (1061 perm/sec)   p_kst 3.681250e-02   p_cons 1.129038e-02   p_joint 1.951923e-04

Joint ci ratio: 1.935760e-01	ci left: 1.771871e-04	ci right 2.156078e-04	k: 409	n:2090000
Cons ci ratio: 2.537526e-02	ci left: 1.114620e-02	ci right 1.143314e-02	k: 23594	n:2090000
KS ci ratio: 1.387057e-02	ci left: 3.655326e-02	ci right 3.706429e-02	k: 76929	n:2090000
UBE2E2   2090000 perm   1979 sec   (1056 perm/sec)   p_kst 3.680813e-02   p_cons 1.128900e-02   p_joint 1.956938e-04

Joint ci ratio: 1.924062e-01	ci left: 1.786093e-04	ci right 2.170769e-04	k: 414	n:2100000
Cons ci ratio: 2.530554e-02	ci left: 1.115464e-02	ci right 1.144100e-02	k: 23724	n:2100000
KS ci ratio: 1.383436e-02	ci left: 3.656997e-02	ci right 3.707988e-02	k: 77331	n:2100000
UBE2E2   2100000 perm   1996 sec   (1052 perm/sec)   p_kst 3.682429e-02   p_cons 1.129714e-02   p_joint 1.971429e-04

Joint ci ratio: 1.921748e-01	ci left: 1.782139e-04	ci right 2.165448e-04	k: 415	n:2110000
Cons ci ratio: 2.524978e-02	ci left: 1.115122e-02	ci right 1.143685e-02	k: 23829	n:2110000
KS ci ratio: 1.380451e-02	ci left: 3.655534e-02	ci right 3.706394e-02	k: 77667	n:2110000
UBE2E2   2110000 perm   2014 sec   (1048 perm/sec)   p_kst 3.680900e-02   p_cons 1.129336e-02   p_joint 1.966825e-04

Joint ci ratio: 1.919443e-01	ci left: 1.778223e-04	ci right 2.160178e-04	k: 416	n:2120000
Cons ci ratio: 2.519438e-02	ci left: 1.114784e-02	ci right 1.143275e-02	k: 23934	n:2120000
KS ci ratio: 1.376826e-02	ci left: 3.657470e-02	ci right 3.708222e-02	k: 78075	n:2120000
UBE2E2   2120000 perm   2032 sec   (1043 perm/sec)   p_kst 3.682783e-02   p_cons 1.128962e-02   p_joint 1.962264e-04

Joint ci ratio: 1.914857e-01	ci left: 1.778813e-04	ci right 2.159876e-04	k: 418	n:2130000
Cons ci ratio: 2.513670e-02	ci left: 1.114682e-02	ci right 1.143104e-02	k: 24044	n:2130000
KS ci ratio: 1.373211e-02	ci left: 3.659482e-02	ci right 3.710128e-02	k: 78485	n:2130000
UBE2E2   2130000 perm   2050 sec   (1039 perm/sec)   p_kst 3.684742e-02   p_cons 1.128826e-02   p_joint 1.962441e-04

Joint ci ratio: 1.905780e-01	ci left: 1.788299e-04	ci right 2.169367e-04	k: 422	n:2140000
Cons ci ratio: 2.507679e-02	ci left: 1.114813e-02	ci right 1.143170e-02	k: 24159	n:2140000
KS ci ratio: 1.370121e-02	ci left: 3.658913e-02	ci right 3.709436e-02	k: 78840	n:2140000
UBE2E2   2140000 perm   2068 sec   (1035 perm/sec)   p_kst 3.684112e-02   p_cons 1.128925e-02   p_joint 1.971963e-04

Joint ci ratio: 1.901291e-01	ci left: 1.788840e-04	ci right 2.169022e-04	k: 424	n:2150000
Cons ci ratio: 2.501888e-02	ci left: 1.114805e-02	ci right 1.143095e-02	k: 24271	n:2150000
KS ci ratio: 1.366639e-02	ci left: 3.660483e-02	ci right 3.710898e-02	k: 79241	n:2150000
UBE2E2   2150000 perm   2086 sec   (1031 perm/sec)   p_kst 3.685628e-02   p_cons 1.128884e-02   p_joint 1.972093e-04

Joint ci ratio: 1.899058e-01	ci left: 1.784968e-04	ci right 2.163830e-04	k: 425	n:2160000
Cons ci ratio: 2.496705e-02	ci left: 1.114290e-02	ci right 1.142508e-02	k: 24372	n:2160000
KS ci ratio: 1.363468e-02	ci left: 3.660561e-02	ci right 3.710859e-02	k: 79610	n:2160000
UBE2E2   2160000 perm   2104 sec   (1027 perm/sec)   p_kst 3.685648e-02   p_cons 1.128333e-02   p_joint 1.967593e-04

Joint ci ratio: 1.894616e-01	ci left: 1.785521e-04	ci right 2.163512e-04	k: 427	n:2170000
Cons ci ratio: 2.490732e-02	ci left: 1.114513e-02	ci right 1.142668e-02	k: 24489	n:2170000
KS ci ratio: 1.360027e-02	ci left: 3.662155e-02	ci right 3.712347e-02	k: 80012	n:2170000
UBE2E2   2170000 perm   2122 sec   (1022 perm/sec)   p_kst 3.687189e-02   p_cons 1.128525e-02   p_joint 1.967742e-04

Joint ci ratio: 1.888010e-01	ci left: 1.790441e-04	ci right 2.168000e-04	k: 430	n:2180000
Cons ci ratio: 2.484597e-02	ci left: 1.114917e-02	ci right 1.143011e-02	k: 24610	n:2180000
KS ci ratio: 1.357174e-02	ci left: 3.660807e-02	ci right 3.710875e-02	k: 80350	n:2180000
UBE2E2   2180000 perm   2141 sec   (1018 perm/sec)   p_kst 3.685780e-02   p_cons 1.128899e-02   p_joint 1.972477e-04

Joint ci ratio: 1.883645e-01	ci left: 1.790966e-04	ci right 2.167664e-04	k: 432	n:2190000
Cons ci ratio: 2.478000e-02	ci left: 1.115771e-02	ci right 1.143811e-02	k: 24741	n:2190000
KS ci ratio: 1.354164e-02	ci left: 3.660383e-02	ci right 3.710333e-02	k: 80708	n:2190000
UBE2E2   2190000 perm   2159 sec   (1014 perm/sec)   p_kst 3.685297e-02   p_cons 1.129726e-02   p_joint 1.972603e-04

Joint ci ratio: 1.870727e-01	ci left: 1.808817e-04	ci right 2.186363e-04	k: 438	n:2200000
Cons ci ratio: 2.471607e-02	ci left: 1.116481e-02	ci right 1.144466e-02	k: 24869	n:2200000
KS ci ratio: 1.351407e-02	ci left: 3.658739e-02	ci right 3.708565e-02	k: 81039	n:2200000
UBE2E2   2200000 perm   2178 sec   (1010 perm/sec)   p_kst 3.683591e-02   p_cons 1.130409e-02   p_joint 1.990909e-04

Joint ci ratio: 1.866480e-01	ci left: 1.809259e-04	ci right 2.185943e-04	k: 440	n:2210000
Cons ci ratio: 2.466160e-02	ci left: 1.116376e-02	ci right 1.144296e-02	k: 24979	n:2210000
KS ci ratio: 1.348152e-02	ci left: 3.659817e-02	ci right 3.709536e-02	k: 81430	n:2210000
UBE2E2   2210000 perm   2196 sec   (1006 perm/sec)   p_kst 3.684615e-02   p_cons 1.130271e-02   p_joint 1.990950e-04

Joint ci ratio: 1.862262e-01	ci left: 1.809697e-04	ci right 2.185525e-04	k: 442	n:2220000
Cons ci ratio: 2.460155e-02	ci left: 1.116809e-02	ci right 1.144670e-02	k: 25101	n:2220000
KS ci ratio: 1.344979e-02	ci left: 3.660570e-02	ci right 3.710181e-02	k: 81814	n:2220000
UBE2E2   2220000 perm   2215 sec   (1002 perm/sec)   p_kst 3.685315e-02   p_cons 1.130676e-02   p_joint 1.990991e-04

Joint ci ratio: 1.860164e-01	ci left: 1.805858e-04	ci right 2.180418e-04	k: 443	n:2230000
Cons ci ratio: 2.454292e-02	ci left: 1.117149e-02	ci right 1.144951e-02	k: 25221	n:2230000
KS ci ratio: 1.342253e-02	ci left: 3.659082e-02	ci right 3.708572e-02	k: 82148	n:2230000
UBE2E2   2230000 perm   2234 sec   (998 perm/sec)   p_kst 3.683767e-02   p_cons 1.130987e-02   p_joint 1.986547e-04

Joint ci ratio: 1.853911e-01	ci left: 1.810566e-04	ci right 2.184698e-04	k: 446	n:2240000
Cons ci ratio: 2.449301e-02	ci left: 1.116731e-02	ci right 1.144467e-02	k: 25324	n:2240000
KS ci ratio: 1.339240e-02	ci left: 3.659209e-02	ci right 3.708589e-02	k: 82518	n:2240000
UBE2E2   2240000 perm   2252 sec   (995 perm/sec)   p_kst 3.683839e-02   p_cons 1.130536e-02   p_joint 1.991071e-04

Joint ci ratio: 1.851841e-01	ci left: 1.806757e-04	ci right 2.179639e-04	k: 447	n:2250000
Cons ci ratio: 2.444147e-02	ci left: 1.116495e-02	ci right 1.144165e-02	k: 25431	n:2250000
KS ci ratio: 1.336122e-02	ci left: 3.660000e-02	ci right 3.709275e-02	k: 82903	n:2250000
UBE2E2   2250000 perm   2271 sec   (991 perm/sec)   p_kst 3.684578e-02   p_cons 1.130267e-02   p_joint 1.986667e-04

Joint ci ratio: 1.851842e-01	ci left: 1.798763e-04	ci right 2.169995e-04	k: 447	n:2260000
Cons ci ratio: 2.439073e-02	ci left: 1.116216e-02	ci right 1.143821e-02	k: 25537	n:2260000
KS ci ratio: 1.333382e-02	ci left: 3.658888e-02	ci right 3.708045e-02	k: 83245	n:2260000
UBE2E2   2260000 perm   2290 sec   (987 perm/sec)   p_kst 3.683407e-02   p_cons 1.129956e-02   p_joint 1.977876e-04

Joint ci ratio: 1.851843e-01	ci left: 1.790839e-04	ci right 2.160435e-04	k: 447	n:2270000
Cons ci ratio: 2.433311e-02	ci left: 1.116597e-02	ci right 1.144145e-02	k: 25658	n:2270000
KS ci ratio: 1.330528e-02	ci left: 3.658488e-02	ci right 3.707534e-02	k: 83603	n:2270000
UBE2E2   2270000 perm   2309 sec   (983 perm/sec)   p_kst 3.682952e-02   p_cons 1.130308e-02   p_joint 1.969163e-04

Joint ci ratio: 1.847723e-01	ci left: 1.791350e-04	ci right 2.160137e-04	k: 449	n:2280000
Cons ci ratio: 2.428495e-02	ci left: 1.116146e-02	ci right 1.143628e-02	k: 25760	n:2280000
KS ci ratio: 1.327273e-02	ci left: 3.660321e-02	ci right 3.709271e-02	k: 84012	n:2280000
UBE2E2   2280000 perm   2328 sec   (979 perm/sec)   p_kst 3.684737e-02   p_cons 1.129825e-02   p_joint 1.969298e-04

Joint ci ratio: 1.837541e-01	ci left: 1.804354e-04	ci right 2.173544e-04	k: 454	n:2290000
Cons ci ratio: 2.422618e-02	ci left: 1.116697e-02	ci right 1.144125e-02	k: 25885	n:2290000
KS ci ratio: 1.324139e-02	ci left: 3.661616e-02	ci right 3.710466e-02	k: 84409	n:2290000
UBE2E2   2290000 perm   2347 sec   (976 perm/sec)   p_kst 3.685983e-02   p_cons 1.130349e-02   p_joint 1.982533e-04

Joint ci ratio: 1.837542e-01	ci left: 1.796509e-04	ci right 2.164094e-04	k: 454	n:2300000
Cons ci ratio: 2.417253e-02	ci left: 1.116812e-02	ci right 1.144181e-02	k: 26000	n:2300000
KS ci ratio: 1.321441e-02	ci left: 3.660689e-02	ci right 3.709427e-02	k: 84755	n:2300000
UBE2E2   2300000 perm   2367 sec   (972 perm/sec)   p_kst 3.685000e-02   p_cons 1.130435e-02   p_joint 1.973913e-04

Joint ci ratio: 1.835527e-01	ci left: 1.792862e-04	ci right 2.159254e-04	k: 455	n:2310000
Cons ci ratio: 2.412205e-02	ci left: 1.116667e-02	ci right 1.143975e-02	k: 26109	n:2310000
KS ci ratio: 1.318525e-02	ci left: 3.661022e-02	ci right 3.709657e-02	k: 85130	n:2310000
UBE2E2   2310000 perm   2386 sec   (968 perm/sec)   p_kst 3.685281e-02   p_cons 1.130260e-02   p_joint 1.969697e-04

Joint ci ratio: 1.829518e-01	ci left: 1.797472e-04	ci right 2.163470e-04	k: 458	n:2320000
Cons ci ratio: 2.406398e-02	ci left: 1.117252e-02	ci right 1.144508e-02	k: 26235	n:2320000
KS ci ratio: 1.315565e-02	ci left: 3.661697e-02	ci right 3.710230e-02	k: 85513	n:2320000
UBE2E2   2320000 perm   2406 sec   (964 perm/sec)   p_kst 3.685905e-02   p_cons 1.130819e-02   p_joint 1.974138e-04

Joint ci ratio: 1.827529e-01	ci left: 1.793853e-04	ci right 2.158673e-04	k: 459	n:2330000
Cons ci ratio: 2.401325e-02	ci left: 1.117193e-02	ci right 1.144388e-02	k: 26346	n:2330000
KS ci ratio: 1.312854e-02	ci left: 3.661124e-02	ci right 3.709549e-02	k: 85867	n:2330000
UBE2E2   2330000 perm   2426 sec   (961 perm/sec)   p_kst 3.685279e-02   p_cons 1.130730e-02   p_joint 1.969957e-04

Joint ci ratio: 1.813778e-01	ci left: 1.814739e-04	ci right 2.180724e-04	k: 466	n:2340000
Cons ci ratio: 2.395963e-02	ci left: 1.117431e-02	ci right 1.144571e-02	k: 26464	n:2340000
KS ci ratio: 1.310027e-02	ci left: 3.661281e-02	ci right 3.709603e-02	k: 86238	n:2340000
UBE2E2   2340000 perm   2446 sec   (957 perm/sec)   p_kst 3.685385e-02   p_cons 1.130940e-02   p_joint 1.991453e-04

Joint ci ratio: 1.807980e-01	ci left: 1.819204e-04	ci right 2.184788e-04	k: 469	n:2350000
Cons ci ratio: 2.391274e-02	ci left: 1.117075e-02	ci right 1.144152e-02	k: 26568	n:2350000
KS ci ratio: 1.306982e-02	ci left: 3.662709e-02	ci right 3.710937e-02	k: 86639	n:2350000
UBE2E2   2350000 perm   2465 sec   (953 perm/sec)   p_kst 3.686766e-02   p_cons 1.130553e-02   p_joint 1.995745e-04

Joint ci ratio: 9.056507e-02	ci left: 7.572899e-04	ci right 8.295374e-04	k: 1871	n:2360000
Cons ci ratio: 2.385165e-02	ci left: 1.118070e-02	ci right 1.145101e-02	k: 26704	n:2360000
KS ci ratio: 1.304037e-02	ci left: 3.663703e-02	ci right 3.711834e-02	k: 87030	n:2360000
UBE2E2   2360000 perm   2485 sec   (950 perm/sec)   p_kst 3.687712e-02   p_cons 1.131525e-02   p_joint 7.927966e-04

Outputting figure to mutsig2_images.part000000000185/UBE2E2.2_626_2360000_0.036877_0.011315_0.0007928.png
                gene_name: UBE2E2
               theta_stop: 0.091 
                    nperm: 2360000 
                     p_ks: 0.037 
        ci_ks_bounds_left: 0.037 
       ci_ks_bounds_right: 0.037 
                   p_cons: 0.011 
      ci_cons_bounds_left: 0.011 
     ci_cons_bounds_right: 0.011 
                  p_joint: 0.00079 
     ci_joint_bounds_left: 0.00076 
    ci_joint_bounds_right: 0.00083 

Current progress: 94 percent done.
UBE2E3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.119136e-02	ci left: 9.193534e-01	ci right 9.297976e-01	k: 9247	n:10000
KS ci ratio: 7.067756e-03	ci left: 9.649925e-01	ci right 9.719311e-01	k: 9686	n:10000
UBE2E3   10000 perm   1 sec   (7109 perm/sec)   p_kst 9.686000e-01   p_cons 9.247000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000185/UBE2E3.2_644_10000_0.9686_0.9247_1.png
                gene_name: UBE2E3
               theta_stop: 0.011 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
UBE2J1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.670904e-03	ci left: 9.379643e-01	ci right 9.471758e-01	k: 9427	n:10000
Cons ci ratio: 5.380435e-03	ci left: 9.787712e-01	ci right 9.841431e-01	k: 9816	n:10000
KS ci ratio: 1.269727e-02	ci left: 8.991872e-01	ci right 9.107756e-01	k: 9051	n:10000
UBE2J1   10000 perm   1 sec   (6764 perm/sec)   p_kst 9.051000e-01   p_cons 9.816000e-01   p_joint 9.427000e-01

Outputting figure to mutsig2_images.part000000000185/UBE2J1.2_989_10000_0.9051_0.9816_0.9427.png
                gene_name: UBE2J1
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000185
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 185 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1655>
Subject: Job 8004682: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1655>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000186> was used as the working directory.
Started at Sun Nov 11 15:24:16 2012
Results reported at Sun Nov 11 15:51:41 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000186.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000186.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 186  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000186.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1715.54 sec.
    Max Memory :      4569 MB
    Max Swap   :      7041 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
186
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 186
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 186: processing genes 16738 - 16827
Calculating significance of each gene.
Using projection method.
16738	UBN2	7.888036e-01
16739	UBOX5	7.823884e-01
16740	UBP1	6.538764e-01
16741	UBQLN1	6.513923e-01
16742	UBQLN2	2.997027e-01
16743	UBQLN3	6.805700e-02
16744	UBQLN4	7.502449e-01
16745	UBQLNL	1
16746	UBR1	9.847837e-01
16747	UBR2	1
16748	UBR3	9.476284e-01
16749	UBR4	9.999999e-01
16750	UBR5	1
16751	UBR7	5.214339e-01
16752	UBTD1	1
16753	UBTD2	1
16754	UBTF	7.186679e-01
16755	UBTFL1	1
16756	UBXN1	5.736169e-01
16757	UBXN10	5.193578e-01
16758	UBXN11	5.257054e-01
16759	UBXN2A	6.055781e-02
16760	UBXN2B	1
16761	UBXN4	1.874996e-01
16762	UBXN6	1
16763	UBXN7	6.110941e-01
16764	UBXN8	3.874840e-01
16765	UCHL1	1
16766	UCHL3	4.974039e-01
16767	UCHL5	3.785473e-02
16768	UCK1	1
16769	UCK2	1
16770	UCKL1	1
16771	UCMA	1
16772	UCN	9.060628e-02
16773	UCN2	1
16774	UCN3	1
16775	UCP1	2.221604e-01
16776	UCP2	7.491053e-01
16777	UCP3	1.715258e-01
16778	UEVLD	1
16779	UFC1	5.588633e-01
16780	UFD1L	1
16781	UFM1	1
16782	UFSP1	1.824389e-01
16783	UFSP2	8.003886e-01
16784	UGCG	6.177857e-01
16785	UGDH	5.620879e-01
16786	UGGT1	9.970219e-01
16787	UGGT2	3.393161e-01
16788	UGP2	1.642362e-01
16789	UGT1A1	7.263816e-01
16790	UGT1A10	5.995338e-01
16791	UGT1A3	8.236427e-01
16792	UGT1A4	7.884489e-01
16793	UGT1A5	2.590694e-01
16794	UGT1A6	8.516253e-01
16795	UGT1A7	5.744688e-01
16796	UGT1A8	1.103861e-01
16797	UGT1A9	3.650714e-01
16798	UGT2A1	3.743070e-01
16799	UGT2A2	1
16800	UGT2A3	4.572269e-01
16801	UGT2B10	7.149925e-01
16802	UGT2B11	5.572260e-02
16803	UGT2B15	8.486810e-01
16804	UGT2B17	1
16805	UGT2B28	5.862714e-01
16806	UGT2B4	8.609187e-01
16807	UGT2B7	5.890441e-01
16808	UGT3A1	4.816162e-02
16809	UGT3A2	4.454908e-05
16810	UGT8	7.572877e-02
16811	UHMK1	3.296538e-01
16812	UHRF1	7.695152e-01
16813	UHRF1BP1	9.208933e-01
16814	UHRF1BP1L	2.032213e-01
16815	UHRF2	1
16816	UIMC1	9.136729e-01
16817	ULBP1	2.330140e-01
16818	ULBP2	1
16819	ULBP3	6.699717e-01
16820	ULK1	5.958513e-01
16821	ULK2	5.272553e-01
16822	ULK3	1
16823	ULK4	8.814287e-01
16824	UMOD	4.874243e-02
16825	UMODL1	9.978430e-01
16826	UMPS	4.551370e-01
16827	UNC119	1
Done

Running MutSig 2:
Scatter job 186: processing genes 16738 - 16827
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
UBR4
Processing conservation and coverage...
62% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.728722e-01	ci left: 4.465920e-02	ci right 5.320602e-02	k: 488	n:10000
Cons ci ratio: 4.233520e-01	ci left: 6.705543e-03	ci right 1.038936e-02	k: 84	n:10000
KS ci ratio: 3.480620e-02	ci left: 5.493028e-01	ci right 5.688627e-01	k: 5591	n:10000
UBR4   10000 perm   4 sec   (2813 perm/sec)   p_kst 5.591000e-01   p_cons 8.400000e-03   p_joint 4.880000e-02

Joint ci ratio: 1.269532e-01	ci left: 4.260458e-02	ci right 4.842848e-02	k: 909	n:20000
Cons ci ratio: 3.146564e-01	ci left: 6.489480e-03	ci right 8.956878e-03	k: 153	n:20000
KS ci ratio: 2.469572e-02	ci left: 5.505334e-01	ci right 5.643499e-01	k: 11149	n:20000
UBR4   20000 perm   9 sec   (2124 perm/sec)   p_kst 5.574500e-01   p_cons 7.650000e-03   p_joint 4.545000e-02

Joint ci ratio: 9.806613e-02	ci left: 4.808163e-02	ci right 5.307253e-02	k: 1516	n:30000
Cons ci ratio: 2.499256e-01	ci left: 7.116901e-03	ci right 9.180058e-03	k: 243	n:30000
KS ci ratio: 2.024831e-02	ci left: 5.497551e-01	ci right 5.610342e-01	k: 16662	n:30000
UBR4   30000 perm   13 sec   (2227 perm/sec)   p_kst 5.554000e-01   p_cons 8.100000e-03   p_joint 5.053333e-02

Joint ci ratio: 7.735556e-02	ci left: 5.798672e-02	ci right 6.267736e-02	k: 2412	n:40000
Cons ci ratio: 2.203457e-01	ci left: 6.984896e-03	ci right 8.737684e-03	k: 313	n:40000
KS ci ratio: 1.749406e-02	ci left: 5.516901e-01	ci right 5.614517e-01	k: 22263	n:40000
UBR4   40000 perm   18 sec   (2258 perm/sec)   p_kst 5.565750e-01   p_cons 7.825000e-03   p_joint 6.030000e-02

Joint ci ratio: 7.603080e-02	ci left: 4.855750e-02	ci right 5.241490e-02	k: 2523	n:50000
Cons ci ratio: 1.992701e-01	ci left: 6.914492e-03	ci right 8.463488e-03	k: 383	n:50000
KS ci ratio: 1.566549e-02	ci left: 5.516318e-01	ci right 5.603617e-01	k: 27800	n:50000
UBR4   50000 perm   22 sec   (2272 perm/sec)   p_kst 5.560000e-01   p_cons 7.660000e-03   p_joint 5.046000e-02

Joint ci ratio: 7.033830e-02	ci left: 4.748289e-02	ci right 5.096087e-02	k: 2952	n:60000
Cons ci ratio: 1.816699e-01	ci left: 7.000225e-03	ci right 8.414684e-03	k: 461	n:60000
KS ci ratio: 1.442463e-02	ci left: 5.477433e-01	ci right 5.557184e-01	k: 33104	n:60000
UBR4   60000 perm   26 sec   (2277 perm/sec)   p_kst 5.517333e-01   p_cons 7.683333e-03   p_joint 4.920000e-02

Joint ci ratio: 7.796220e-02	ci left: 3.349654e-02	ci right 3.622791e-02	k: 2439	n:70000
Cons ci ratio: 1.683513e-01	ci left: 7.038413e-03	ci right 8.345749e-03	k: 537	n:70000
KS ci ratio: 1.362305e-02	ci left: 5.381716e-01	ci right 5.455677e-01	k: 37931	n:70000
UBR4   70000 perm   31 sec   (2274 perm/sec)   p_kst 5.418714e-01   p_cons 7.671429e-03   p_joint 3.484286e-02

Joint ci ratio: 6.892329e-02	ci left: 3.752145e-02	ci right 4.021212e-02	k: 3108	n:80000
Cons ci ratio: 1.575891e-01	ci left: 7.069906e-03	ci right 8.291204e-03	k: 613	n:80000
KS ci ratio: 1.273736e-02	ci left: 5.386398e-01	ci right 5.455571e-01	k: 43368	n:80000
UBR4   80000 perm   35 sec   (2270 perm/sec)   p_kst 5.421000e-01   p_cons 7.662500e-03   p_joint 3.885000e-02

Joint ci ratio: 6.462314e-02	ci left: 3.800704e-02	ci right 4.055610e-02	k: 3534	n:90000
Cons ci ratio: 1.492036e-01	ci left: 7.042976e-03	ci right 8.189103e-03	k: 684	n:90000
KS ci ratio: 1.201107e-02	ci left: 5.387492e-01	ci right 5.452703e-01	k: 48781	n:90000
UBR4   90000 perm   40 sec   (2262 perm/sec)   p_kst 5.420111e-01   p_cons 7.600000e-03   p_joint 3.926667e-02

Joint ci ratio: 5.686793e-02	ci left: 4.406859e-02	ci right 4.665786e-02	k: 4535	n:100000
Cons ci ratio: 1.411841e-01	ci left: 7.109648e-03	ci right 8.199201e-03	k: 764	n:100000
KS ci ratio: 1.079714e-02	ci left: 5.655334e-01	ci right 5.716826e-01	k: 56861	n:100000
UBR4   100000 perm   44 sec   (2252 perm/sec)   p_kst 5.686100e-01   p_cons 7.640000e-03   p_joint 4.535000e-02

Joint ci ratio: 5.281522e-02	ci left: 4.642994e-02	ci right 4.895761e-02	k: 5245	n:110000
Cons ci ratio: 1.347348e-01	ci left: 7.121611e-03	ci right 8.159147e-03	k: 839	n:110000
KS ci ratio: 1.030061e-02	ci left: 5.653939e-01	ci right 5.712570e-01	k: 62516	n:110000
UBR4   110000 perm   49 sec   (2241 perm/sec)   p_kst 5.683273e-01   p_cons 7.627273e-03   p_joint 4.768182e-02

Joint ci ratio: 5.095553e-02	ci left: 4.580112e-02	ci right 4.820416e-02	k: 5639	n:120000
Cons ci ratio: 1.288829e-01	ci left: 7.156724e-03	ci right 8.150625e-03	k: 917	n:120000
KS ci ratio: 9.865154e-03	ci left: 5.653667e-01	ci right 5.709800e-01	k: 68181	n:120000
UBR4   120000 perm   54 sec   (2228 perm/sec)   p_kst 5.681750e-01   p_cons 7.641667e-03   p_joint 4.699167e-02

Joint ci ratio: 4.996891e-02	ci left: 4.406943e-02	ci right 4.633553e-02	k: 5875	n:130000
Cons ci ratio: 1.244270e-01	ci left: 7.105252e-03	ci right 8.055373e-03	k: 984	n:130000
KS ci ratio: 9.480035e-03	ci left: 5.653789e-01	ci right 5.707719e-01	k: 73850	n:130000
UBR4   130000 perm   59 sec   (2214 perm/sec)   p_kst 5.680769e-01   p_cons 7.569231e-03   p_joint 4.519231e-02

Joint ci ratio: 5.147327e-02	ci left: 3.875374e-02	ci right 4.080824e-02	k: 5568	n:140000
Cons ci ratio: 1.203458e-01	ci left: 7.068572e-03	ci right 7.980575e-03	k: 1052	n:140000
KS ci ratio: 9.126925e-03	ci left: 5.659221e-01	ci right 5.711180e-01	k: 79593	n:140000
UBR4   140000 perm   64 sec   (2200 perm/sec)   p_kst 5.685214e-01   p_cons 7.514286e-03   p_joint 3.977143e-02

Joint ci ratio: 5.099057e-02	ci left: 3.693926e-02	ci right 3.887865e-02	k: 5685	n:150000
Cons ci ratio: 1.165368e-01	ci left: 7.050171e-03	ci right 7.929027e-03	k: 1122	n:150000
KS ci ratio: 8.811249e-03	ci left: 5.663558e-01	ci right 5.713748e-01	k: 85330	n:150000
UBR4   150000 perm   69 sec   (2186 perm/sec)   p_kst 5.688667e-01   p_cons 7.480000e-03   p_joint 3.790000e-02

Joint ci ratio: 4.996554e-02	ci left: 3.611741e-02	ci right 3.797442e-02	k: 5926	n:160000
Cons ci ratio: 1.130679e-01	ci left: 7.034470e-03	ci right 7.883524e-03	k: 1192	n:160000
KS ci ratio: 8.533054e-03	ci left: 5.663440e-01	ci right 5.712035e-01	k: 91004	n:160000
UBR4   160000 perm   74 sec   (2172 perm/sec)   p_kst 5.687750e-01   p_cons 7.450000e-03   p_joint 3.703750e-02

Joint ci ratio: 4.876571e-02	ci left: 3.572397e-02	ci right 3.751540e-02	k: 6224	n:170000
Cons ci ratio: 1.096729e-01	ci left: 7.049568e-03	ci right 7.873245e-03	k: 1267	n:170000
KS ci ratio: 8.272501e-03	ci left: 5.667596e-01	ci right 5.714734e-01	k: 96750	n:170000
UBR4   170000 perm   79 sec   (2157 perm/sec)   p_kst 5.691176e-01   p_cons 7.452941e-03   p_joint 3.661176e-02

Joint ci ratio: 4.721056e-02	ci left: 3.601732e-02	ci right 3.776430e-02	k: 6639	n:180000
Cons ci ratio: 1.065265e-01	ci left: 7.068736e-03	ci right 7.869472e-03	k: 1343	n:180000
KS ci ratio: 8.037533e-03	ci left: 5.669419e-01	ci right 5.715226e-01	k: 102462	n:180000
UBR4   180000 perm   84 sec   (2142 perm/sec)   p_kst 5.692333e-01   p_cons 7.461111e-03   p_joint 3.688333e-02

Joint ci ratio: 4.583232e-02	ci left: 3.622334e-02	ci right 3.792766e-02	k: 7043	n:190000
Cons ci ratio: 1.037467e-01	ci left: 7.070805e-03	ci right 7.849599e-03	k: 1416	n:190000
KS ci ratio: 7.819245e-03	ci left: 5.672488e-01	ci right 5.717069e-01	k: 108201	n:190000
UBR4   190000 perm   89 sec   (2127 perm/sec)   p_kst 5.694789e-01   p_cons 7.452632e-03   p_joint 3.706842e-02

Joint ci ratio: 4.340691e-02	ci left: 3.832891e-02	ci right 4.003448e-02	k: 7835	n:200000
Cons ci ratio: 1.012080e-01	ci left: 7.068037e-03	ci right 7.826344e-03	k: 1488	n:200000
KS ci ratio: 7.622720e-03	ci left: 5.672114e-01	ci right 5.715566e-01	k: 113877	n:200000
UBR4   200000 perm   95 sec   (2113 perm/sec)   p_kst 5.693850e-01   p_cons 7.440000e-03   p_joint 3.917500e-02

Joint ci ratio: 4.118154e-02	ci left: 4.050948e-02	ci right 4.221749e-02	k: 8685	n:210000
Cons ci ratio: 9.862444e-02	ci left: 7.098260e-03	ci right 7.839243e-03	k: 1567	n:210000
KS ci ratio: 7.445147e-03	ci left: 5.668596e-01	ci right 5.711004e-01	k: 119486	n:210000
UBR4   210000 perm   100 sec   (2098 perm/sec)   p_kst 5.689810e-01   p_cons 7.461905e-03   p_joint 4.135714e-02

Outputting figure to mutsig2_images.part000000000186/UBR4.11_15976_210000_0.56898_0.0074619_0.041357.png
                gene_name: UBR4
               theta_stop: 0.099 
                    nperm: 210000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.0075 
      ci_cons_bounds_left: 0.0071 
     ci_cons_bounds_right: 0.0078 
                  p_joint: 0.041 
     ci_joint_bounds_left: 0.041 
    ci_joint_bounds_right: 0.042 

Current progress: 2 percent done.
UBR5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.845539e-02	ci left: 3.010409e-01	ci right 3.192698e-01	k: 3101	n:10000
Cons ci ratio: 3.546746e-02	ci left: 5.399856e-01	ci right 5.595854e-01	k: 5498	n:10000
KS ci ratio: 7.128045e-02	ci left: 2.238545e-01	ci right 2.405018e-01	k: 2321	n:10000
UBR5   10000 perm   3 sec   (3742 perm/sec)   p_kst 2.321000e-01   p_cons 5.498000e-01   p_joint 3.101000e-01

Outputting figure to mutsig2_images.part000000000186/UBR5.11_8636_10000_0.2321_0.5498_0.3101.png
                gene_name: UBR5
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 4 percent done.
UGT3A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.909192e-02	ci left: 6.353290e-01	ci right 6.541866e-01	k: 6448	n:10000
KS ci ratio: 2.714277e-02	ci left: 6.666264e-01	ci right 6.850711e-01	k: 6759	n:10000
UGT3A2   10000 perm   2 sec   (5496 perm/sec)   p_kst 6.759000e-01   p_cons 6.448000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000186/UGT3A2.10_1600_10000_0.6759_0.6448_1.png
                gene_name: UGT3A2
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 6 percent done.
UGGT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.136050e-02	ci left: 2.234596e-01	ci right 2.400969e-01	k: 2317	n:10000
Cons ci ratio: 3.473567e-02	ci left: 5.503049e-01	ci right 5.698601e-01	k: 5601	n:10000
KS ci ratio: 9.809198e-02	ci left: 1.309046e-01	ci right 1.445072e-01	k: 1376	n:10000
UGGT2   10000 perm   2 sec   (4656 perm/sec)   p_kst 1.376000e-01   p_cons 5.601000e-01   p_joint 2.317000e-01

Outputting figure to mutsig2_images.part000000000186/UGGT2.8_4707_10000_0.1376_0.5601_0.2317.png
                gene_name: UGGT2
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 8 percent done.
UGT2B4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.613879e-02	ci left: 8.480476e-01	ci right 8.619449e-01	k: 8551	n:10000
Cons ci ratio: 6.974550e-03	ci left: 9.658346e-01	ci right 9.726884e-01	k: 9694	n:10000
KS ci ratio: 2.867409e-02	ci left: 6.419672e-01	ci right 6.607446e-01	k: 6514	n:10000
UGT2B4   10000 perm   2 sec   (5529 perm/sec)   p_kst 6.514000e-01   p_cons 9.694000e-01   p_joint 8.551000e-01

Outputting figure to mutsig2_images.part000000000186/UGT2B4.8_1611_10000_0.6514_0.9694_0.8551.png
                gene_name: UGT2B4
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 10 percent done.
UGT3A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.071196e-02	ci left: 6.100009e-01	ci right 6.291294e-01	k: 6196	n:10000
KS ci ratio: 8.427585e-03	ci left: 9.516910e-01	ci right 9.598408e-01	k: 9559	n:10000
UGT3A1   10000 perm   2 sec   (5775 perm/sec)   p_kst 9.559000e-01   p_cons 6.196000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000186/UGT3A1.8_1682_10000_0.9559_0.6196_1.png
                gene_name: UGT3A1
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 12 percent done.
UHRF1BP1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.588733e-02	ci left: 4.120947e-01	ci right 4.315508e-01	k: 4218	n:10000
Cons ci ratio: 1.639828e-02	ci left: 8.439706e-01	ci right 8.580243e-01	k: 8511	n:10000
KS ci ratio: 7.353110e-02	ci left: 2.130972e-01	ci right 2.294655e-01	k: 2212	n:10000
UHRF1BP1L   10000 perm   2 sec   (4481 perm/sec)   p_kst 2.212000e-01   p_cons 8.511000e-01   p_joint 4.218000e-01

Outputting figure to mutsig2_images.part000000000186/UHRF1BP1L.8_4503_10000_0.2212_0.8511_0.4218.png
                gene_name: UHRF1BP1L
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 14 percent done.
UBQLN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.067067e-01	ci left: 1.125202e-01	ci right 1.253028e-01	k: 1188	n:10000
Cons ci ratio: 6.679098e-02	ci left: 2.475672e-01	ci right 2.647751e-01	k: 2561	n:10000
KS ci ratio: 1.161173e-01	ci left: 9.632952e-02	ci right 1.083033e-01	k: 1022	n:10000
UBQLN3   10000 perm   2 sec   (5428 perm/sec)   p_kst 1.022000e-01   p_cons 2.561000e-01   p_joint 1.188000e-01

Joint ci ratio: 7.802814e-02	ci left: 1.076609e-01	ci right 1.164522e-01	k: 2240	n:20000
Cons ci ratio: 4.709897e-02	ci left: 2.511530e-01	ci right 2.633177e-01	k: 5144	n:20000
KS ci ratio: 8.215368e-02	ci left: 9.798590e-02	ci right 1.064301e-01	k: 2043	n:20000
UBQLN3   20000 perm   4 sec   (4925 perm/sec)   p_kst 1.021500e-01   p_cons 2.572000e-01   p_joint 1.120000e-01

Outputting figure to mutsig2_images.part000000000186/UBQLN3.7_1972_20000_0.10215_0.2572_0.112.png
                gene_name: UBQLN3
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.098 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 16 percent done.
UBR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.588110e-02	ci left: 6.872816e-01	ci right 7.054039e-01	k: 6964	n:10000
Cons ci ratio: 1.560120e-02	ci left: 8.564111e-01	ci right 8.699766e-01	k: 8633	n:10000
KS ci ratio: 3.800521e-02	ci left: 5.055515e-01	ci right 5.252395e-01	k: 5154	n:10000
UBR1   10000 perm   2 sec   (4515 perm/sec)   p_kst 5.154000e-01   p_cons 8.633000e-01   p_joint 6.964000e-01

Outputting figure to mutsig2_images.part000000000186/UBR1.6_5438_10000_0.5154_0.8633_0.6964.png
                gene_name: UBR1
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 18 percent done.
UGT2A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.780389e-02	ci left: 1.315900e-01	ci right 1.452214e-01	k: 1383	n:10000
Cons ci ratio: 4.703560e-03	ci left: 9.833923e-01	ci right 9.881185e-01	k: 9859	n:10000
KS ci ratio: 1.597330e-01	ci left: 5.224686e-02	ci right 6.141345e-02	k: 567	n:10000
UGT2A3   10000 perm   2 sec   (5671 perm/sec)   p_kst 5.670000e-02   p_cons 9.859000e-01   p_joint 1.383000e-01

Joint ci ratio: 8.264998e-02	ci left: 9.690616e-02	ci right 1.053102e-01	k: 2021	n:20000
Cons ci ratio: 3.278487e-03	ci left: 9.845385e-01	ci right 9.878179e-01	k: 19725	n:20000
KS ci ratio: 1.094202e-01	ci left: 5.699136e-02	ci right 6.363718e-02	k: 1205	n:20000
UGT2A3   20000 perm   4 sec   (5110 perm/sec)   p_kst 6.025000e-02   p_cons 9.862500e-01   p_joint 1.010500e-01

Joint ci ratio: 6.311431e-02	ci left: 1.103259e-01	ci right 1.175490e-01	k: 3417	n:30000
Cons ci ratio: 2.483488e-03	ci left: 9.868429e-01	ci right 9.893279e-01	k: 29644	n:30000
KS ci ratio: 8.957925e-02	ci left: 5.730604e-02	ci right 6.271289e-02	k: 1799	n:30000
UGT2A3   30000 perm   6 sec   (4846 perm/sec)   p_kst 5.996667e-02   p_cons 9.881333e-01   p_joint 1.139000e-01

Outputting figure to mutsig2_images.part000000000186/UGT2A3.6_1608_30000_0.059967_0.98813_0.1139.png
                gene_name: UGT2A3
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.060 
        ci_ks_bounds_left: 0.057 
       ci_ks_bounds_right: 0.063 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 20 percent done.
UHRF1BP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.849500e-02	ci left: 4.991503e-01	ci right 5.188444e-01	k: 5090	n:10000
KS ci ratio: 5.669586e-03	ci left: 9.766355e-01	ci right 9.822803e-01	k: 9796	n:10000
UHRF1BP1   10000 perm   2 sec   (4685 perm/sec)   p_kst 9.796000e-01   p_cons 5.090000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000186/UHRF1BP1.6_4407_10000_0.9796_0.509_1.png
                gene_name: UHRF1BP1
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 22 percent done.
UBR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.470045e-02	ci left: 5.508059e-01	ci right 5.703587e-01	k: 5606	n:10000
Cons ci ratio: 9.688766e-03	ci left: 9.377569e-01	ci right 9.469833e-01	k: 9425	n:10000
KS ci ratio: 6.337758e-02	ci left: 2.678488e-01	ci right 2.854815e-01	k: 2766	n:10000
UBR2   10000 perm   2 sec   (4526 perm/sec)   p_kst 2.766000e-01   p_cons 9.425000e-01   p_joint 5.606000e-01

Outputting figure to mutsig2_images.part000000000186/UBR2.5_5602_10000_0.2766_0.9425_0.5606.png
                gene_name: UBR2
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 24 percent done.
UGT2B11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.216112e-02	ci left: 7.492789e-01	ci right 7.661707e-01	k: 7578	n:10000
Cons ci ratio: 1.896174e-02	ci left: 8.025773e-01	ci right 8.180415e-01	k: 8104	n:10000
KS ci ratio: 3.542450e-02	ci left: 5.405866e-01	ci right 5.601840e-01	k: 5504	n:10000
UGT2B11   10000 perm   2 sec   (5783 perm/sec)   p_kst 5.504000e-01   p_cons 8.104000e-01   p_joint 7.578000e-01

Outputting figure to mutsig2_images.part000000000186/UGT2B11.5_1614_10000_0.5504_0.8104_0.7578.png
                gene_name: UGT2B11
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 25 percent done.
UGT2B28
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.939316e-03	ci left: 9.661506e-01	ci right 9.729722e-01	k: 9697	n:10000
KS ci ratio: 2.244472e-02	ci left: 7.445255e-01	ci right 7.615269e-01	k: 7531	n:10000
UGT2B28   10000 perm   2 sec   (5778 perm/sec)   p_kst 7.531000e-01   p_cons 9.697000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000186/UGT2B28.5_1614_10000_0.7531_0.9697_1.png
                gene_name: UGT2B28
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 27 percent done.
UGT8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.205248e-02	ci left: 7.510997e-01	ci right 7.679489e-01	k: 7596	n:10000
KS ci ratio: 1.592994e-02	ci left: 8.513105e-01	ci right 8.650802e-01	k: 8583	n:10000
UGT8   10000 perm   2 sec   (5801 perm/sec)   p_kst 8.583000e-01   p_cons 7.596000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000186/UGT8.5_1646_10000_0.8583_0.7596_1.png
                gene_name: UGT8
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 29 percent done.
ULK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.086341e-01	ci left: 1.089077e-01	ci right 1.215175e-01	k: 1151	n:10000
Cons ci ratio: 2.831816e-01	ci left: 1.613586e-02	ci right 2.154960e-02	k: 187	n:10000
KS ci ratio: 3.103201e-02	ci left: 6.050792e-01	ci right 6.242539e-01	k: 6147	n:10000
ULK2   10000 perm   2 sec   (5285 perm/sec)   p_kst 6.147000e-01   p_cons 1.870000e-02   p_joint 1.151000e-01

Joint ci ratio: 9.085417e-02	ci left: 8.126842e-02	ci right 8.905268e-02	k: 1702	n:20000
Cons ci ratio: 1.915958e-01	ci left: 1.853343e-02	ci right 2.250769e-02	k: 409	n:20000
KS ci ratio: 2.172923e-02	ci left: 6.125788e-01	ci right 6.260865e-01	k: 12387	n:20000
ULK2   20000 perm   4 sec   (4728 perm/sec)   p_kst 6.193500e-01   p_cons 2.045000e-02   p_joint 8.510000e-02

Joint ci ratio: 8.104870e-02	ci left: 6.939423e-02	ci right 7.528892e-02	k: 2169	n:30000
Cons ci ratio: 1.549027e-01	ci left: 1.927906e-02	ci right 2.254798e-02	k: 626	n:30000
KS ci ratio: 1.771894e-02	ci left: 6.144459e-01	ci right 6.254642e-01	k: 18599	n:30000
ULK2   30000 perm   7 sec   (4512 perm/sec)   p_kst 6.199667e-01   p_cons 2.086667e-02   p_joint 7.230000e-02

Joint ci ratio: 5.903751e-02	ci left: 9.633654e-02	ci right 1.022218e-01	k: 3970	n:40000
Cons ci ratio: 1.359891e-01	ci left: 1.896456e-02	ci right 2.175569e-02	k: 813	n:40000
KS ci ratio: 1.561727e-02	ci left: 6.068533e-01	ci right 6.164304e-01	k: 24466	n:40000
ULK2   40000 perm   9 sec   (4379 perm/sec)   p_kst 6.116500e-01   p_cons 2.032500e-02   p_joint 9.925000e-02

Joint ci ratio: 5.638650e-02	ci left: 8.564929e-02	ci right 9.063865e-02	k: 4406	n:50000
Cons ci ratio: 1.158649e-01	ci left: 2.108184e-02	ci right 2.369402e-02	k: 1118	n:50000
KS ci ratio: 1.393949e-02	ci left: 6.083536e-01	ci right 6.169133e-01	k: 30632	n:50000
ULK2   50000 perm   12 sec   (4286 perm/sec)   p_kst 6.126400e-01   p_cons 2.236000e-02   p_joint 8.812000e-02

Joint ci ratio: 5.252847e-02	ci left: 8.269796e-02	ci right 8.717561e-02	k: 5095	n:60000
Cons ci ratio: 1.050045e-01	ci left: 2.150677e-02	ci right 2.390637e-02	k: 1361	n:60000
KS ci ratio: 1.272339e-02	ci left: 6.087885e-01	ci right 6.166006e-01	k: 36762	n:60000
ULK2   60000 perm   14 sec   (4199 perm/sec)   p_kst 6.127000e-01   p_cons 2.268333e-02   p_joint 8.491667e-02

Joint ci ratio: 4.855762e-02	ci left: 8.309955e-02	ci right 8.724920e-02	k: 5961	n:70000
Cons ci ratio: 9.684190e-02	ci left: 2.176271e-02	ci right 2.399137e-02	k: 1600	n:70000
KS ci ratio: 1.177641e-02	ci left: 6.092084e-01	ci right 6.164394e-01	k: 42898	n:70000
ULK2   70000 perm   17 sec   (4112 perm/sec)   p_kst 6.128286e-01   p_cons 2.285714e-02   p_joint 8.515714e-02

Outputting figure to mutsig2_images.part000000000186/ULK2.5_3219_70000_0.61283_0.022857_0.085157.png
                gene_name: ULK2
               theta_stop: 0.097 
                    nperm: 70000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.023 
      ci_cons_bounds_left: 0.022 
     ci_cons_bounds_right: 0.024 
                  p_joint: 0.085 
     ci_joint_bounds_left: 0.083 
    ci_joint_bounds_right: 0.087 

Current progress: 31 percent done.
UMOD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.081627e-02	ci left: 6.083937e-01	ci right 6.275375e-01	k: 6180	n:10000
Cons ci ratio: 3.648198e-02	ci left: 5.259661e-01	ci right 5.456130e-01	k: 5358	n:10000
KS ci ratio: 5.068314e-02	ci left: 3.647032e-01	ci right 3.837701e-01	k: 3742	n:10000
UMOD   10000 perm   2 sec   (5715 perm/sec)   p_kst 3.742000e-01   p_cons 5.358000e-01   p_joint 6.180000e-01

Outputting figure to mutsig2_images.part000000000186/UMOD.5_1963_10000_0.3742_0.5358_0.618.png
                gene_name: UMOD
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 33 percent done.
UBN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.261065e-02	ci left: 2.727001e-01	ci right 2.904273e-01	k: 2815	n:10000
Cons ci ratio: 1.140181e-01	ci left: 9.964203e-02	ci right 1.117887e-01	k: 1056	n:10000
KS ci ratio: 3.112378e-02	ci left: 6.036732e-01	ci right 6.228608e-01	k: 6133	n:10000
UBN2   10000 perm   2 sec   (5534 perm/sec)   p_kst 6.133000e-01   p_cons 1.056000e-01   p_joint 2.815000e-01

Joint ci ratio: 4.197559e-02	ci left: 2.972314e-01	ci right 3.100258e-01	k: 6072	n:20000
Cons ci ratio: 8.034850e-02	ci left: 1.020608e-01	ci right 1.106540e-01	k: 2126	n:20000
KS ci ratio: 2.201824e-02	ci left: 6.063090e-01	ci right 6.198581e-01	k: 12262	n:20000
UBN2   20000 perm   4 sec   (5016 perm/sec)   p_kst 6.131000e-01   p_cons 1.063000e-01   p_joint 3.036000e-01

Outputting figure to mutsig2_images.part000000000186/UBN2.4_4116_20000_0.6131_0.1063_0.3036.png
                gene_name: UBN2
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 35 percent done.
UBQLNL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.002234e-02	ci left: 7.850257e-01	ci right 8.010033e-01	k: 7931	n:10000
Cons ci ratio: 4.292950e-02	ci left: 4.448051e-01	ci right 4.644214e-01	k: 4546	n:10000
KS ci ratio: 1.632061e-02	ci left: 8.451935e-01	ci right 8.592007e-01	k: 8523	n:10000
UBQLNL   10000 perm   2 sec   (6289 perm/sec)   p_kst 8.523000e-01   p_cons 4.546000e-01   p_joint 7.931000e-01

Outputting figure to mutsig2_images.part000000000186/UBQLNL.4_1432_10000_0.8523_0.4546_0.7931.png
                gene_name: UBQLNL
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 37 percent done.
UBR7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.157851e-02	ci left: 4.606770e-01	ci right 4.803401e-01	k: 4705	n:10000
Cons ci ratio: 5.307046e-02	ci left: 3.435278e-01	ci right 3.623579e-01	k: 3529	n:10000
KS ci ratio: 4.474909e-02	ci left: 4.243561e-01	ci right 4.438824e-01	k: 4341	n:10000
UBR7   10000 perm   2 sec   (6167 perm/sec)   p_kst 4.341000e-01   p_cons 3.529000e-01   p_joint 4.705000e-01

Outputting figure to mutsig2_images.part000000000186/UBR7.4_1322_10000_0.4341_0.3529_0.4705.png
                gene_name: UBR7
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 39 percent done.
UBXN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.457650e-02	ci left: 4.262506e-01	ci right 4.457867e-01	k: 4360	n:10000
Cons ci ratio: 4.672501e-02	ci left: 4.033262e-01	ci right 4.227245e-01	k: 4130	n:10000
KS ci ratio: 9.262256e-02	ci left: 1.448193e-01	ci right 1.589842e-01	k: 1518	n:10000
UBXN4   10000 perm   2 sec   (5747 perm/sec)   p_kst 1.518000e-01   p_cons 4.130000e-01   p_joint 4.360000e-01

Outputting figure to mutsig2_images.part000000000186/UBXN4.4_1579_10000_0.1518_0.413_0.436.png
                gene_name: UBXN4
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 41 percent done.
UCHL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.901577e-02	ci left: 6.365358e-01	ci right 6.553791e-01	k: 6460	n:10000
KS ci ratio: 2.890169e-02	ci left: 6.383461e-01	ci right 6.571677e-01	k: 6478	n:10000
UCHL5   10000 perm   2 sec   (6212 perm/sec)   p_kst 6.478000e-01   p_cons 6.460000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000186/UCHL5.4_1034_10000_0.6478_0.646_1.png
                gene_name: UCHL5
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 43 percent done.
UGGT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.349092e-02	ci left: 5.682486e-01	ci right 5.877059e-01	k: 5780	n:10000
Cons ci ratio: 3.969102e-02	ci left: 4.838540e-01	ci right 5.035497e-01	k: 4937	n:10000
KS ci ratio: 6.776877e-02	ci left: 2.421299e-01	ci right 2.592155e-01	k: 2506	n:10000
UGGT1   10000 perm   2 sec   (4896 perm/sec)   p_kst 2.506000e-01   p_cons 4.937000e-01   p_joint 5.780000e-01

Outputting figure to mutsig2_images.part000000000186/UGGT1.4_4832_10000_0.2506_0.4937_0.578.png
                gene_name: UGGT1
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 45 percent done.
UGP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.994177e-02	ci left: 6.219580e-01	ci right 6.409654e-01	k: 6315	n:10000
Cons ci ratio: 1.371664e-01	ci left: 7.029921e-02	ci right 8.074967e-02	k: 754	n:10000
KS ci ratio: 3.807373e-02	ci left: 5.046513e-01	ci right 5.243403e-01	k: 5145	n:10000
UGP2   10000 perm   2 sec   (5827 perm/sec)   p_kst 5.145000e-01   p_cons 7.540000e-02   p_joint 6.315000e-01

Joint ci ratio: 2.458332e-02	ci left: 5.527868e-01	ci right 5.665958e-01	k: 11194	n:20000
Cons ci ratio: 9.637342e-02	ci left: 7.270641e-02	ci right 8.011730e-02	k: 1527	n:20000
KS ci ratio: 2.717310e-02	ci left: 5.029458e-01	ci right 5.168513e-01	k: 10198	n:20000
UGP2   20000 perm   4 sec   (5138 perm/sec)   p_kst 5.099000e-01   p_cons 7.635000e-02   p_joint 5.597000e-01

Outputting figure to mutsig2_images.part000000000186/UGP2.4_1567_20000_0.5099_0.07635_0.5597.png
                gene_name: UGP2
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.076 
      ci_cons_bounds_left: 0.073 
     ci_cons_bounds_right: 0.080 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 47 percent done.
UGT1A8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.131226e-01	ci left: 1.011041e-01	ci right 1.133258e-01	k: 1071	n:10000
Cons ci ratio: 1.870845e-02	ci left: 8.067404e-01	ci right 8.220760e-01	k: 8145	n:10000
KS ci ratio: 2.276270e-01	ci left: 2.551545e-02	ci right 3.216281e-02	k: 287	n:10000
UGT1A8   10000 perm   2 sec   (5967 perm/sec)   p_kst 2.870000e-02   p_cons 8.145000e-01   p_joint 1.071000e-01

Joint ci ratio: 8.283239e-02	ci left: 9.651357e-02	ci right 1.049029e-01	k: 2013	n:20000
Cons ci ratio: 1.330502e-02	ci left: 8.072731e-01	ci right 8.181358e-01	k: 16255	n:20000
KS ci ratio: 1.608167e-01	ci left: 2.652586e-02	ci right 3.121245e-02	k: 576	n:20000
UGT1A8   20000 perm   4 sec   (4861 perm/sec)   p_kst 2.880000e-02   p_cons 8.127500e-01   p_joint 1.006500e-01

Joint ci ratio: 7.206733e-02	ci left: 8.652244e-02	ci right 9.302393e-02	k: 2692	n:30000
Cons ci ratio: 1.081044e-02	ci left: 8.097854e-01	ci right 8.186204e-01	k: 24427	n:30000
KS ci ratio: 1.298092e-01	ci left: 2.758204e-02	ci right 3.144312e-02	k: 884	n:30000
UGT1A8   30000 perm   6 sec   (4723 perm/sec)   p_kst 2.946667e-02   p_cons 8.142333e-01   p_joint 8.973333e-02

Joint ci ratio: 6.628619e-02	ci left: 7.772872e-02	ci right 8.308238e-02	k: 3215	n:40000
Cons ci ratio: 9.391711e-03	ci left: 8.094209e-01	ci right 8.170836e-01	k: 32531	n:40000
KS ci ratio: 1.103168e-01	ci left: 2.890948e-02	ci right 3.230912e-02	k: 1223	n:40000
UGT1A8   40000 perm   9 sec   (4667 perm/sec)   p_kst 3.057500e-02   p_cons 8.132750e-01   p_joint 8.037500e-02

Joint ci ratio: 6.997316e-02	ci left: 5.698969e-02	ci right 6.114169e-02	k: 2952	n:50000
Cons ci ratio: 8.376247e-03	ci left: 8.107022e-01	ci right 8.175413e-01	k: 40707	n:50000
KS ci ratio: 9.651186e-02	ci left: 3.039641e-02	ci right 3.349824e-02	k: 1596	n:50000
UGT1A8   50000 perm   11 sec   (4595 perm/sec)   p_kst 3.192000e-02   p_cons 8.141400e-01   p_joint 5.904000e-02

Outputting figure to mutsig2_images.part000000000186/UGT1A8.4_1613_50000_0.03192_0.81414_0.05904.png
                gene_name: UGT1A8
               theta_stop: 0.097 
                    nperm: 50000 
                     p_ks: 0.032 
        ci_ks_bounds_left: 0.030 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.059 
     ci_joint_bounds_left: 0.057 
    ci_joint_bounds_right: 0.061 

Current progress: 49 percent done.
ULK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.540909e-02	ci left: 8.593708e-01	ci right 8.728151e-01	k: 8662	n:10000
Cons ci ratio: 2.119438e-02	ci left: 7.654710e-01	ci right 7.819693e-01	k: 7738	n:10000
KS ci ratio: 3.773228e-02	ci left: 5.091529e-01	ci right 5.288360e-01	k: 5190	n:10000
ULK1   10000 perm   2 sec   (5129 perm/sec)   p_kst 5.190000e-01   p_cons 7.738000e-01   p_joint 8.662000e-01

Outputting figure to mutsig2_images.part000000000186/ULK1.4_3265_10000_0.519_0.7738_0.8662.png
                gene_name: ULK1
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 51 percent done.
UBQLN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.292450e-02	ci left: 5.765733e-01	ci right 5.959764e-01	k: 5863	n:10000
Cons ci ratio: 3.983416e-02	ci left: 4.820550e-01	ci right 5.017497e-01	k: 4919	n:10000
KS ci ratio: 3.677630e-02	ci left: 5.219620e-01	ci right 5.416195e-01	k: 5318	n:10000
UBQLN2   10000 perm   2 sec   (5869 perm/sec)   p_kst 5.318000e-01   p_cons 4.919000e-01   p_joint 5.863000e-01

Outputting figure to mutsig2_images.part000000000186/UBQLN2.3_1879_10000_0.5318_0.4919_0.5863.png
                gene_name: UBQLN2
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 53 percent done.
UBTF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.362097e-02	ci left: 3.388581e-01	ci right 3.576304e-01	k: 3482	n:10000
Cons ci ratio: 3.078365e-02	ci left: 6.088960e-01	ci right 6.280350e-01	k: 6185	n:10000
KS ci ratio: 7.118065e-02	ci left: 2.243482e-01	ci right 2.410078e-01	k: 2326	n:10000
UBTF   10000 perm   2 sec   (5936 perm/sec)   p_kst 2.326000e-01   p_cons 6.185000e-01   p_joint 3.482000e-01

Outputting figure to mutsig2_images.part000000000186/UBTF.3_2375_10000_0.2326_0.6185_0.3482.png
                gene_name: UBTF
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 55 percent done.
UBXN2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.935551e-02	ci left: 7.960815e-01	ci right 8.117411e-01	k: 8040	n:10000
KS ci ratio: 8.857514e-03	ci left: 9.471062e-01	ci right 9.556284e-01	k: 9515	n:10000
UBXN2A   10000 perm   2 sec   (6370 perm/sec)   p_kst 9.515000e-01   p_cons 8.040000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000186/UBXN2A.3_804_10000_0.9515_0.804_1.png
                gene_name: UBXN2A
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 57 percent done.
UCP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.659877e-02	ci left: 2.486549e-01	ci right 2.658867e-01	k: 2572	n:10000
Cons ci ratio: 5.080236e-02	ci left: 3.636092e-01	ci right 3.826648e-01	k: 3731	n:10000
KS ci ratio: 9.805070e-02	ci left: 1.310025e-01	ci right 1.446093e-01	k: 1377	n:10000
UCP3   10000 perm   2 sec   (6459 perm/sec)   p_kst 1.377000e-01   p_cons 3.731000e-01   p_joint 2.572000e-01

Outputting figure to mutsig2_images.part000000000186/UCP3.3_967_10000_0.1377_0.3731_0.2572.png
                gene_name: UCP3
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 59 percent done.
UGT1A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.290325e-02	ci left: 7.368421e-01	ci right 7.540147e-01	k: 7455	n:10000
Cons ci ratio: 4.098259e-02	ci left: 4.678676e-01	ci right 4.875454e-01	k: 4777	n:10000
KS ci ratio: 3.798239e-02	ci left: 5.058516e-01	ci right 5.255392e-01	k: 5157	n:10000
UGT1A5   10000 perm   2 sec   (6122 perm/sec)   p_kst 5.157000e-01   p_cons 4.777000e-01   p_joint 7.455000e-01

Outputting figure to mutsig2_images.part000000000186/UGT1A5.3_1625_10000_0.5157_0.4777_0.7455.png
                gene_name: UGT1A5
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.75 

Current progress: 61 percent done.
UGT1A9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.648497e-02	ci left: 4.058169e-01	ci right 4.252323e-01	k: 4155	n:10000
Cons ci ratio: 1.744606e-02	ci left: 8.272725e-01	ci right 8.419321e-01	k: 8347	n:10000
KS ci ratio: 8.307477e-02	ci left: 1.744810e-01	ci right 1.897046e-01	k: 1820	n:10000
UGT1A9   10000 perm   2 sec   (6264 perm/sec)   p_kst 1.820000e-01   p_cons 8.347000e-01   p_joint 4.155000e-01

Outputting figure to mutsig2_images.part000000000186/UGT1A9.3_1613_10000_0.182_0.8347_0.4155.png
                gene_name: UGT1A9
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 63 percent done.
UGT2A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.490173e-02	ci left: 2.068833e-01	ci right 2.230831e-01	k: 2149	n:10000
Cons ci ratio: 1.591398e-01	ci left: 5.263174e-02	ci right 6.182831e-02	k: 571	n:10000
KS ci ratio: 3.487684e-02	ci left: 5.483008e-01	ci right 5.678653e-01	k: 5581	n:10000
UGT2A1   10000 perm   2 sec   (6101 perm/sec)   p_kst 5.581000e-01   p_cons 5.710000e-02   p_joint 2.149000e-01

Joint ci ratio: 4.898946e-02	ci left: 2.365233e-01	ci right 2.484517e-01	k: 4849	n:20000
Cons ci ratio: 1.162417e-01	ci left: 5.066451e-02	ci right 5.696600e-02	k: 1075	n:20000
KS ci ratio: 2.517477e-02	ci left: 5.410209e-01	ci right 5.548652e-01	k: 10959	n:20000
UGT2A1   20000 perm   4 sec   (5423 perm/sec)   p_kst 5.479500e-01   p_cons 5.375000e-02   p_joint 2.424500e-01

Joint ci ratio: 5.190770e-02	ci left: 1.555711e-01	ci right 1.638949e-01	k: 4791	n:30000
Cons ci ratio: 9.500496e-02	ci left: 5.114319e-02	ci right 5.627700e-02	k: 1610	n:30000
KS ci ratio: 2.048719e-02	ci left: 5.439487e-01	ci right 5.552417e-01	k: 16488	n:30000
UGT2A1   30000 perm   6 sec   (5169 perm/sec)   p_kst 5.496000e-01   p_cons 5.366667e-02   p_joint 1.597000e-01

Outputting figure to mutsig2_images.part000000000186/UGT2A1.3_1608_30000_0.5496_0.053667_0.1597.png
                gene_name: UGT2A1
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.054 
      ci_cons_bounds_left: 0.051 
     ci_cons_bounds_right: 0.056 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.16 

Current progress: 65 percent done.
UGT2B10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.312913e-02	ci left: 4.425100e-01	ci right 4.621178e-01	k: 4523	n:10000
Cons ci ratio: 4.705415e-02	ci left: 3.999392e-01	ci right 4.193135e-01	k: 4096	n:10000
KS ci ratio: 5.016777e-02	ci left: 3.694779e-01	ci right 3.885927e-01	k: 3790	n:10000
UGT2B10   10000 perm   2 sec   (5514 perm/sec)   p_kst 3.790000e-01   p_cons 4.096000e-01   p_joint 4.523000e-01

Outputting figure to mutsig2_images.part000000000186/UGT2B10.3_3196_10000_0.379_0.4096_0.4523.png
                gene_name: UGT2B10
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 67 percent done.
UGT2B15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.769094e-01	ci left: 8.686342e-03	ci right 1.280614e-02	k: 106	n:10000
Cons ci ratio: 7.029257e-01	ci left: 2.024975e-03	ci right 4.279939e-03	k: 30	n:10000
KS ci ratio: 8.808495e-02	ci left: 1.579697e-01	ci right 1.726258e-01	k: 1652	n:10000
UGT2B15   10000 perm   2 sec   (5454 perm/sec)   p_kst 1.652000e-01   p_cons 3.000000e-03   p_joint 1.060000e-02

Joint ci ratio: 5.139616e-01	ci left: 2.159255e-03	ci right 3.690949e-03	k: 57	n:20000
Cons ci ratio: 4.780895e-01	ci left: 2.553111e-03	ci right 4.196522e-03	k: 66	n:20000
KS ci ratio: 6.342771e-02	ci left: 1.552400e-01	ci right 1.654590e-01	k: 3206	n:20000
UGT2B15   20000 perm   4 sec   (4889 perm/sec)   p_kst 1.603000e-01   p_cons 3.300000e-03   p_joint 2.850000e-03

Joint ci ratio: 4.819796e-01	ci left: 1.672573e-03	ci right 2.760773e-03	k: 65	n:30000
Cons ci ratio: 7.998332e-01	ci left: 4.860610e-04	ci right 1.150156e-03	k: 23	n:30000
KS ci ratio: 5.184333e-02	ci left: 1.559009e-01	ci right 1.642317e-01	k: 4801	n:30000
UGT2B15   30000 perm   6 sec   (4677 perm/sec)   p_kst 1.600333e-01   p_cons 7.666667e-04   p_joint 2.166667e-03

Joint ci ratio: 4.934784e-01	ci left: 1.188576e-03	ci right 1.986596e-03	k: 62	n:40000
Cons ci ratio: 6.355979e-01	ci left: 6.513664e-04	ci right 1.274768e-03	k: 37	n:40000
KS ci ratio: 4.505985e-02	ci left: 1.555031e-01	ci right 1.626965e-01	k: 6363	n:40000
UGT2B15   40000 perm   9 sec   (4539 perm/sec)   p_kst 1.590750e-01   p_cons 9.250000e-04   p_joint 1.550000e-03

Joint ci ratio: 5.655260e-01	ci left: 6.907559e-04	ci right 1.249807e-03	k: 47	n:50000
Cons ci ratio: 5.282766e-01	ci left: 8.114302e-04	ci right 1.408934e-03	k: 54	n:50000
KS ci ratio: 4.012899e-02	ci left: 1.570345e-01	ci right 1.634850e-01	k: 8012	n:50000
UGT2B15   50000 perm   11 sec   (4431 perm/sec)   p_kst 1.602400e-01   p_cons 1.080000e-03   p_joint 9.400000e-04

Joint ci ratio: 5.715620e-01	ci left: 5.613493e-04	ci right 1.022495e-03	k: 46	n:60000
Cons ci ratio: 4.859487e-01	ci left: 8.215572e-04	ci right 1.361908e-03	k: 64	n:60000
KS ci ratio: 3.644235e-02	ci left: 1.587125e-01	ci right 1.646203e-01	k: 9699	n:60000
UGT2B15   60000 perm   14 sec   (4334 perm/sec)   p_kst 1.616500e-01   p_cons 1.066667e-03   p_joint 7.666667e-04

Joint ci ratio: 5.190015e-01	ci left: 6.043662e-04	ci right 1.038742e-03	k: 56	n:70000
Cons ci ratio: 4.523968e-01	ci left: 8.301729e-04	ci right 1.326967e-03	k: 74	n:70000
KS ci ratio: 3.379193e-02	ci left: 1.585113e-01	ci right 1.639740e-01	k: 11286	n:70000
UGT2B15   70000 perm   17 sec   (4239 perm/sec)   p_kst 1.612286e-01   p_cons 1.057143e-03   p_joint 8.000000e-04

Joint ci ratio: 6.928217e-01	ci left: 2.633022e-04	ci right 5.499806e-04	k: 31	n:80000
Cons ci ratio: 4.326670e-01	ci left: 8.041499e-04	ci right 1.258290e-03	k: 81	n:80000
KS ci ratio: 3.171275e-02	ci left: 1.578134e-01	ci right 1.629112e-01	k: 12828	n:80000
UGT2B15   80000 perm   19 sec   (4158 perm/sec)   p_kst 1.603500e-01   p_cons 1.012500e-03   p_joint 3.875000e-04

Joint ci ratio: 3.653062e-01	ci left: 1.044954e-03	ci right 1.521460e-03	k: 114	n:90000
Cons ci ratio: 4.019690e-01	ci left: 8.440973e-04	ci right 1.277986e-03	k: 94	n:90000
KS ci ratio: 2.988875e-02	ci left: 1.580521e-01	ci right 1.628587e-01	k: 14440	n:90000
UGT2B15   90000 perm   22 sec   (4085 perm/sec)   p_kst 1.604444e-01   p_cons 1.044444e-03   p_joint 1.266667e-03

Joint ci ratio: 4.019904e-01	ci left: 7.596804e-04	ci right 1.150201e-03	k: 94	n:100000
Cons ci ratio: 3.918020e-01	ci left: 8.046937e-04	ci right 1.205160e-03	k: 99	n:100000
KS ci ratio: 2.835555e-02	ci left: 1.581701e-01	ci right 1.627296e-01	k: 16044	n:100000
UGT2B15   100000 perm   25 sec   (4017 perm/sec)   p_kst 1.604400e-01   p_cons 9.900000e-04   p_joint 9.400000e-04

Joint ci ratio: 3.787746e-01	ci left: 7.890118e-04	ci right 1.165373e-03	k: 106	n:110000
Cons ci ratio: 3.653491e-01	ci left: 8.549459e-04	ci right 1.244859e-03	k: 114	n:110000
KS ci ratio: 2.704829e-02	ci left: 1.581544e-01	ci right 1.624999e-01	k: 17635	n:110000
UGT2B15   110000 perm   28 sec   (3948 perm/sec)   p_kst 1.603182e-01   p_cons 1.036364e-03   p_joint 9.636364e-04

Joint ci ratio: 3.490365e-01	ci left: 8.671463e-04	ci right 1.240975e-03	k: 125	n:120000
Cons ci ratio: 3.504313e-01	ci left: 8.595444e-04	ci right 1.231914e-03	k: 124	n:120000
KS ci ratio: 2.600654e-02	ci left: 1.571175e-01	ci right 1.612657e-01	k: 19102	n:120000
UGT2B15   120000 perm   31 sec   (3882 perm/sec)   p_kst 1.591833e-01   p_cons 1.033333e-03   p_joint 1.041667e-03

Joint ci ratio: 3.449641e-01	ci left: 8.215049e-04	ci right 1.170602e-03	k: 128	n:130000
Cons ci ratio: 3.372034e-01	ci left: 8.637093e-04	ci right 1.220689e-03	k: 134	n:130000
KS ci ratio: 2.496757e-02	ci left: 1.573986e-01	ci right 1.613858e-01	k: 20720	n:130000
UGT2B15   130000 perm   34 sec   (3819 perm/sec)   p_kst 1.593846e-01   p_cons 1.030769e-03   p_joint 9.846154e-04

Joint ci ratio: 2.880126e-01	ci left: 1.131337e-03	ci right 1.518363e-03	k: 184	n:140000
Cons ci ratio: 3.264975e-01	ci left: 8.609466e-04	ci right 1.203119e-03	k: 143	n:140000
KS ci ratio: 2.406958e-02	ci left: 1.573581e-01	ci right 1.611989e-01	k: 22298	n:140000
UGT2B15   140000 perm   37 sec   (3760 perm/sec)   p_kst 1.592714e-01   p_cons 1.021429e-03   p_joint 1.314286e-03

Joint ci ratio: 2.819853e-01	ci left: 1.105434e-03	ci right 1.474277e-03	k: 192	n:150000
Cons ci ratio: 3.146982e-01	ci left: 8.709852e-04	ci right 1.202123e-03	k: 154	n:150000
KS ci ratio: 2.327706e-02	ci left: 1.571527e-01	ci right 1.608605e-01	k: 23850	n:150000
UGT2B15   150000 perm   41 sec   (3703 perm/sec)   p_kst 1.590000e-01   p_cons 1.026667e-03   p_joint 1.280000e-03

Joint ci ratio: 3.022748e-01	ci left: 8.915134e-04	ci right 1.214506e-03	k: 167	n:160000
Cons ci ratio: 2.987356e-01	ci left: 9.146304e-04	ci right 1.241382e-03	k: 171	n:160000
KS ci ratio: 2.255113e-02	ci left: 1.570558e-01	ci right 1.606441e-01	k: 25415	n:160000
UGT2B15   160000 perm   44 sec   (3648 perm/sec)   p_kst 1.588438e-01   p_cons 1.068750e-03   p_joint 1.043750e-03

Joint ci ratio: 2.996182e-01	ci left: 8.553836e-04	ci right 1.162044e-03	k: 170	n:170000
Cons ci ratio: 2.888290e-01	ci left: 9.262174e-04	ci right 1.244133e-03	k: 183	n:170000
KS ci ratio: 2.190265e-02	ci left: 1.568078e-01	ci right 1.602862e-01	k: 26952	n:170000
UGT2B15   170000 perm   47 sec   (3595 perm/sec)   p_kst 1.585412e-01   p_cons 1.076471e-03   p_joint 1.000000e-03

Joint ci ratio: 2.827499e-01	ci left: 9.160194e-04	ci right 1.222637e-03	k: 191	n:180000
Cons ci ratio: 2.791348e-01	ci left: 9.418421e-04	ci right 1.252364e-03	k: 196	n:180000
KS ci ratio: 2.128665e-02	ci left: 1.568432e-01	ci right 1.602233e-01	k: 28535	n:180000
UGT2B15   180000 perm   51 sec   (3543 perm/sec)   p_kst 1.585278e-01   p_cons 1.088889e-03   p_joint 1.061111e-03

Joint ci ratio: 2.872869e-01	ci left: 8.384809e-04	ci right 1.124465e-03	k: 185	n:190000
Cons ci ratio: 2.729705e-01	ci left: 9.363612e-04	ci right 1.237090e-03	k: 205	n:190000
KS ci ratio: 2.071618e-02	ci left: 1.569233e-01	ci right 1.602134e-01	k: 30127	n:190000
UGT2B15   190000 perm   54 sec   (3494 perm/sec)   p_kst 1.585632e-01   p_cons 1.078947e-03   p_joint 9.736842e-04

Joint ci ratio: 2.777425e-01	ci left: 8.569543e-04	ci right 1.137832e-03	k: 198	n:200000
Cons ci ratio: 2.659619e-01	ci left: 9.408284e-04	ci right 1.233941e-03	k: 216	n:200000
KS ci ratio: 2.019189e-02	ci left: 1.569616e-01	ci right 1.601683e-01	k: 31712	n:200000
UGT2B15   200000 perm   58 sec   (3447 perm/sec)   p_kst 1.585600e-01   p_cons 1.080000e-03   p_joint 9.900000e-04

Joint ci ratio: 2.703698e-01	ci left: 8.649298e-04	ci right 1.139620e-03	k: 209	n:210000
Cons ci ratio: 2.623626e-01	ci left: 9.227054e-04	ci right 1.205643e-03	k: 222	n:210000
KS ci ratio: 1.971148e-02	ci left: 1.569166e-01	ci right 1.600452e-01	k: 33280	n:210000
UGT2B15   210000 perm   62 sec   (3403 perm/sec)   p_kst 1.584762e-01   p_cons 1.057143e-03   p_joint 9.952381e-04

Joint ci ratio: 2.600447e-01	ci left: 8.977541e-04	ci right 1.170213e-03	k: 226	n:220000
Cons ci ratio: 2.508125e-01	ci left: 9.700862e-04	ci right 1.252414e-03	k: 243	n:220000
KS ci ratio: 1.924412e-02	ci left: 1.571482e-01	ci right 1.602063e-01	k: 34908	n:220000
UGT2B15   220000 perm   65 sec   (3359 perm/sec)   p_kst 1.586727e-01   p_cons 1.104545e-03   p_joint 1.027273e-03

Joint ci ratio: 2.555814e-01	ci left: 8.912561e-04	ci right 1.156360e-03	k: 234	n:230000
Cons ci ratio: 2.458263e-01	ci left: 9.686813e-04	ci right 1.244140e-03	k: 253	n:230000
KS ci ratio: 1.882841e-02	ci left: 1.570789e-01	ci right 1.600688e-01	k: 36471	n:230000
UGT2B15   230000 perm   69 sec   (3319 perm/sec)   p_kst 1.585696e-01   p_cons 1.100000e-03   p_joint 1.017391e-03

Joint ci ratio: 2.600559e-01	ci left: 8.229370e-04	ci right 1.072702e-03	k: 226	n:240000
Cons ci ratio: 2.388721e-01	ci left: 9.870261e-04	ci right 1.258587e-03	k: 268	n:240000
KS ci ratio: 1.844458e-02	ci left: 1.569289e-01	ci right 1.598544e-01	k: 38013	n:240000
UGT2B15   240000 perm   73 sec   (3275 perm/sec)   p_kst 1.583875e-01   p_cons 1.116667e-03   p_joint 9.416667e-04

Joint ci ratio: 2.296602e-01	ci left: 1.030385e-03	ci right 1.301393e-03	k: 290	n:250000
Cons ci ratio: 2.358255e-01	ci left: 9.738793e-04	ci right 1.237906e-03	k: 275	n:250000
KS ci ratio: 1.807136e-02	ci left: 1.569668e-01	ci right 1.598332e-01	k: 39599	n:250000
UGT2B15   250000 perm   77 sec   (3234 perm/sec)   p_kst 1.583960e-01   p_cons 1.100000e-03   p_joint 1.160000e-03

Joint ci ratio: 2.217927e-01	ci left: 1.066961e-03	ci right 1.336664e-03	k: 311	n:260000
Cons ci ratio: 2.300615e-01	ci left: 9.871274e-04	ci right 1.247276e-03	k: 289	n:260000
KS ci ratio: 1.770970e-02	ci left: 1.571556e-01	ci right 1.599674e-01	k: 41225	n:260000
UGT2B15   260000 perm   81 sec   (3193 perm/sec)   p_kst 1.585577e-01   p_cons 1.111538e-03   p_joint 1.196154e-03

Joint ci ratio: 2.269537e-01	ci left: 9.785002e-04	ci right 1.232404e-03	k: 297	n:270000
Cons ci ratio: 2.258186e-01	ci left: 9.889818e-04	ci right 1.244144e-03	k: 300	n:270000
KS ci ratio: 1.737228e-02	ci left: 1.572793e-01	ci right 1.600392e-01	k: 42837	n:270000
UGT2B15   270000 perm   86 sec   (3154 perm/sec)   p_kst 1.586556e-01   p_cons 1.111111e-03   p_joint 1.100000e-03

Joint ci ratio: 2.247049e-01	ci left: 9.637693e-04	ci right 1.211030e-03	k: 303	n:280000
Cons ci ratio: 2.228775e-01	ci left: 9.806264e-04	ci right 1.229885e-03	k: 308	n:280000
KS ci ratio: 1.704935e-02	ci left: 1.574587e-01	ci right 1.601698e-01	k: 44467	n:280000
UGT2B15   280000 perm   90 sec   (3116 perm/sec)   p_kst 1.588107e-01   p_cons 1.100000e-03   p_joint 1.082143e-03

Joint ci ratio: 2.218065e-01	ci left: 9.565791e-04	ci right 1.198397e-03	k: 311	n:290000
Cons ci ratio: 2.197017e-01	ci left: 9.761259e-04	ci right 1.220227e-03	k: 317	n:290000
KS ci ratio: 1.674355e-02	ci left: 1.576295e-01	ci right 1.602945e-01	k: 46098	n:290000
UGT2B15   290000 perm   94 sec   (3079 perm/sec)   p_kst 1.589586e-01   p_cons 1.093103e-03   p_joint 1.072414e-03

Joint ci ratio: 2.186756e-01	ci left: 9.530381e-04	ci right 1.190103e-03	k: 320	n:300000
Cons ci ratio: 2.159977e-01	ci left: 9.782546e-04	ci right 1.218217e-03	k: 328	n:300000
KS ci ratio: 1.647027e-02	ci left: 1.575203e-01	ci right 1.601396e-01	k: 47648	n:300000
UGT2B15   300000 perm   99 sec   (3043 perm/sec)   p_kst 1.588267e-01   p_cons 1.093333e-03   p_joint 1.066667e-03

Joint ci ratio: 2.211060e-01	ci left: 9.009551e-04	ci right 1.127894e-03	k: 313	n:310000
Cons ci ratio: 2.121628e-01	ci left: 9.833327e-04	ci right 1.219701e-03	k: 340	n:310000
KS ci ratio: 1.621856e-02	ci left: 1.572771e-01	ci right 1.598519e-01	k: 49154	n:310000
UGT2B15   310000 perm   103 sec   (3008 perm/sec)   p_kst 1.585613e-01   p_cons 1.096774e-03   p_joint 1.009677e-03

Joint ci ratio: 2.289036e-01	ci left: 8.108684e-04	ci right 1.023337e-03	k: 292	n:320000
Cons ci ratio: 2.076437e-01	ci left: 9.970155e-04	ci right 1.230920e-03	k: 355	n:320000
KS ci ratio: 1.595989e-02	ci left: 1.573514e-01	ci right 1.598860e-01	k: 50757	n:320000
UGT2B15   320000 perm   108 sec   (2974 perm/sec)   p_kst 1.586156e-01   p_cons 1.109375e-03   p_joint 9.125000e-04

Joint ci ratio: 2.281288e-01	ci left: 7.920094e-04	ci right 9.987352e-04	k: 294	n:330000
Cons ci ratio: 2.042298e-01	ci left: 1.001292e-03	ci right 1.231855e-03	k: 367	n:330000
KS ci ratio: 1.571036e-02	ci left: 1.574699e-01	ci right 1.599664e-01	k: 52376	n:330000
UGT2B15   330000 perm   112 sec   (2942 perm/sec)   p_kst 1.587152e-01   p_cons 1.112121e-03   p_joint 8.909091e-04

Joint ci ratio: 2.243575e-01	ci left: 7.964602e-04	ci right 1.000436e-03	k: 304	n:340000
Cons ci ratio: 2.012443e-01	ci left: 1.002553e-03	ci right 1.229617e-03	k: 378	n:340000
KS ci ratio: 1.546809e-02	ci left: 1.576521e-01	ci right 1.601126e-01	k: 54019	n:340000
UGT2B15   340000 perm   117 sec   (2909 perm/sec)   p_kst 1.588794e-01   p_cons 1.111765e-03   p_joint 8.941176e-04

Joint ci ratio: 2.398082e-01	ci left: 6.714328e-04	ci right 8.569940e-04	k: 266	n:350000
Cons ci ratio: 1.986411e-01	ci left: 1.001049e-03	ci right 1.224486e-03	k: 388	n:350000
KS ci ratio: 1.524337e-02	ci left: 1.577073e-01	ci right 1.601326e-01	k: 55621	n:350000
UGT2B15   350000 perm   122 sec   (2876 perm/sec)   p_kst 1.589171e-01   p_cons 1.108571e-03   p_joint 7.600000e-04

Joint ci ratio: 2.375948e-01	ci left: 6.658399e-04	ci right 8.479070e-04	k: 271	n:360000
Cons ci ratio: 1.954024e-01	ci left: 1.007573e-03	ci right 1.228362e-03	k: 401	n:360000
KS ci ratio: 1.502505e-02	ci left: 1.578151e-01	ci right 1.602070e-01	k: 57243	n:360000
UGT2B15   360000 perm   127 sec   (2845 perm/sec)   p_kst 1.590083e-01   p_cons 1.113889e-03   p_joint 7.527778e-04

Joint ci ratio: 2.354415e-01	ci left: 6.605567e-04	ci right 8.393037e-04	k: 276	n:370000
Cons ci ratio: 1.939616e-01	ci left: 9.957660e-04	ci right 1.212169e-03	k: 407	n:370000
KS ci ratio: 1.482288e-02	ci left: 1.577907e-01	ci right 1.601498e-01	k: 58818	n:370000
UGT2B15   370000 perm   131 sec   (2814 perm/sec)   p_kst 1.589676e-01   p_cons 1.100000e-03   p_joint 7.459459e-04

Joint ci ratio: 2.325220e-01	ci left: 6.605149e-04	ci right 8.367157e-04	k: 283	n:380000
Cons ci ratio: 1.923199e-01	ci left: 9.870916e-04	ci right 1.199581e-03	k: 414	n:380000
KS ci ratio: 1.463183e-02	ci left: 1.577101e-01	ci right 1.600372e-01	k: 60371	n:380000
UGT2B15   380000 perm   137 sec   (2783 perm/sec)   p_kst 1.588711e-01   p_cons 1.089474e-03   p_joint 7.447368e-04

Joint ci ratio: 2.367324e-01	ci left: 6.194431e-04	ci right 7.881183e-04	k: 273	n:390000
Cons ci ratio: 1.904933e-01	ci left: 9.813111e-04	ci right 1.190318e-03	k: 422	n:390000
KS ci ratio: 1.443371e-02	ci left: 1.578971e-01	ci right 1.601952e-01	k: 62027	n:390000
UGT2B15   390000 perm   142 sec   (2754 perm/sec)   p_kst 1.590436e-01   p_cons 1.082051e-03   p_joint 7.000000e-04

Joint ci ratio: 2.333500e-01	ci left: 6.227795e-04	ci right 7.895908e-04	k: 281	n:400000
Cons ci ratio: 1.887178e-01	ci left: 9.758287e-04	ci right 1.181509e-03	k: 430	n:400000
KS ci ratio: 1.424595e-02	ci left: 1.580275e-01	ci right 1.602974e-01	k: 63664	n:400000
UGT2B15   400000 perm   147 sec   (2725 perm/sec)   p_kst 1.591600e-01   p_cons 1.075000e-03   p_joint 7.025000e-04

Joint ci ratio: 2.293187e-01	ci left: 6.305669e-04	ci right 7.961333e-04	k: 291	n:410000
Cons ci ratio: 1.859340e-01	ci left: 9.822488e-04	ci right 1.185883e-03	k: 443	n:410000
KS ci ratio: 1.407200e-02	ci left: 1.580254e-01	ci right 1.602673e-01	k: 65249	n:410000
UGT2B15   410000 perm   152 sec   (2696 perm/sec)   p_kst 1.591439e-01   p_cons 1.080488e-03   p_joint 7.097561e-04

Joint ci ratio: 1.828697e-01	ci left: 9.929282e-04	ci right 1.195008e-03	k: 458	n:420000
Cons ci ratio: 1.836726e-01	ci left: 9.838409e-04	ci right 1.185049e-03	k: 454	n:420000
KS ci ratio: 1.390179e-02	ci left: 1.580709e-01	ci right 1.602861e-01	k: 66854	n:420000
UGT2B15   420000 perm   157 sec   (2669 perm/sec)   p_kst 1.591762e-01   p_cons 1.080952e-03   p_joint 1.090476e-03

Joint ci ratio: 1.809098e-01	ci left: 9.920338e-04	ci right 1.191531e-03	k: 468	n:430000
Cons ci ratio: 1.822767e-01	ci left: 9.764939e-04	ci right 1.174514e-03	k: 461	n:430000
KS ci ratio: 1.373725e-02	ci left: 1.581215e-01	ci right 1.603110e-01	k: 68462	n:430000
UGT2B15   430000 perm   163 sec   (2642 perm/sec)   p_kst 1.592140e-01   p_cons 1.072093e-03   p_joint 1.088372e-03

Joint ci ratio: 1.882902e-01	ci left: 8.914442e-04	ci right 1.078863e-03	k: 432	n:440000
Cons ci ratio: 1.803356e-01	ci left: 9.759967e-04	ci right 1.171578e-03	k: 471	n:440000
KS ci ratio: 1.357635e-02	ci left: 1.582107e-01	ci right 1.603756e-01	k: 70088	n:440000
UGT2B15   440000 perm   168 sec   (2617 perm/sec)   p_kst 1.592909e-01   p_cons 1.070455e-03   p_joint 9.818182e-04

Joint ci ratio: 1.964047e-01	ci left: 7.975964e-04	ci right 9.733768e-04	k: 397	n:450000
Cons ci ratio: 1.790138e-01	ci left: 9.691635e-04	ci right 1.161798e-03	k: 478	n:450000
KS ci ratio: 1.342688e-02	ci left: 1.581787e-01	ci right 1.603191e-01	k: 71661	n:450000
UGT2B15   450000 perm   174 sec   (2591 perm/sec)   p_kst 1.592467e-01   p_cons 1.062222e-03   p_joint 8.822222e-04

Joint ci ratio: 1.944602e-01	ci left: 7.967977e-04	ci right 9.704577e-04	k: 405	n:460000
Cons ci ratio: 1.777207e-01	ci left: 9.626325e-04	ci right 1.152438e-03	k: 485	n:460000
KS ci ratio: 1.328105e-02	ci left: 1.581720e-01	ci right 1.602888e-01	k: 73245	n:460000
UGT2B15   460000 perm   179 sec   (2566 perm/sec)   p_kst 1.592283e-01   p_cons 1.054348e-03   p_joint 8.804348e-04

Joint ci ratio: 1.921085e-01	ci left: 8.000917e-04	ci right 9.721144e-04	k: 415	n:470000
Cons ci ratio: 1.766345e-01	ci left: 9.543504e-04	ci right 1.141250e-03	k: 491	n:470000
KS ci ratio: 1.314018e-02	ci left: 1.581593e-01	ci right 1.602534e-01	k: 74826	n:470000
UGT2B15   470000 perm   185 sec   (2542 perm/sec)   p_kst 1.592043e-01   p_cons 1.044681e-03   p_joint 8.829787e-04

Joint ci ratio: 1.896175e-01	ci left: 8.052450e-04	ci right 9.758721e-04	k: 426	n:480000
Cons ci ratio: 1.738296e-01	ci left: 9.663400e-04	ci right 1.152267e-03	k: 507	n:480000
KS ci ratio: 1.299693e-02	ci left: 1.582865e-01	ci right 1.603593e-01	k: 76474	n:480000
UGT2B15   480000 perm   191 sec   (2518 perm/sec)   p_kst 1.593208e-01   p_cons 1.056250e-03   p_joint 8.875000e-04

Joint ci ratio: 1.874352e-01	ci left: 8.082566e-04	ci right 9.773264e-04	k: 436	n:490000
Cons ci ratio: 1.716468e-01	ci left: 9.720026e-04	ci right 1.156428e-03	k: 520	n:490000
KS ci ratio: 1.286482e-02	ci left: 1.582723e-01	ci right 1.603236e-01	k: 78055	n:490000
UGT2B15   490000 perm   196 sec   (2494 perm/sec)   p_kst 1.592959e-01   p_cons 1.061224e-03   p_joint 8.897959e-04

Joint ci ratio: 1.863728e-01	ci left: 8.016233e-04	ci right 9.682476e-04	k: 441	n:500000
Cons ci ratio: 1.701835e-01	ci left: 9.697925e-04	ci right 1.152068e-03	k: 529	n:500000
KS ci ratio: 1.272877e-02	ci left: 1.584243e-01	ci right 1.604557e-01	k: 79719	n:500000
UGT2B15   500000 perm   202 sec   (2470 perm/sec)   p_kst 1.594380e-01   p_cons 1.058000e-03   p_joint 8.820000e-04

Joint ci ratio: 1.670590e-01	ci left: 9.883386e-04	ci right 1.170347e-03	k: 549	n:510000
Cons ci ratio: 1.692290e-01	ci left: 9.620416e-04	ci right 1.141743e-03	k: 535	n:510000
KS ci ratio: 1.260331e-02	ci left: 1.584355e-01	ci right 1.604469e-01	k: 81314	n:510000
UGT2B15   510000 perm   208 sec   (2448 perm/sec)   p_kst 1.594392e-01   p_cons 1.049020e-03   p_joint 1.076471e-03

Joint ci ratio: 1.698664e-01	ci left: 9.361739e-04	ci right 1.111770e-03	k: 531	n:520000
Cons ci ratio: 1.669090e-01	ci left: 9.711740e-04	ci right 1.149844e-03	k: 550	n:520000
KS ci ratio: 1.248587e-02	ci left: 1.583523e-01	ci right 1.603438e-01	k: 82860	n:520000
UGT2B15   520000 perm   214 sec   (2425 perm/sec)   p_kst 1.593462e-01   p_cons 1.057692e-03   p_joint 1.021154e-03

Joint ci ratio: 1.676739e-01	ci left: 9.438099e-04	ci right 1.118322e-03	k: 545	n:530000
Cons ci ratio: 1.655625e-01	ci left: 9.691246e-04	ci right 1.145836e-03	k: 559	n:530000
KS ci ratio: 1.236181e-02	ci left: 1.584851e-01	ci right 1.604583e-01	k: 84519	n:530000
UGT2B15   530000 perm   221 sec   (2403 perm/sec)   p_kst 1.594698e-01   p_cons 1.054717e-03   p_joint 1.028302e-03

Joint ci ratio: 1.679838e-01	ci left: 9.227829e-04	ci right 1.093754e-03	k: 543	n:540000
Cons ci ratio: 1.645379e-01	ci left: 9.636051e-04	ci right 1.138115e-03	k: 566	n:540000
KS ci ratio: 1.224409e-02	ci left: 1.585539e-01	ci right 1.605090e-01	k: 86146	n:540000
UGT2B15   540000 perm   227 sec   (2381 perm/sec)   p_kst 1.595296e-01   p_cons 1.048148e-03   p_joint 1.005556e-03

Joint ci ratio: 1.670656e-01	ci left: 9.164565e-04	ci right 1.085234e-03	k: 549	n:550000
Cons ci ratio: 1.631060e-01	ci left: 9.635214e-04	ci right 1.136349e-03	k: 576	n:550000
KS ci ratio: 1.213180e-02	ci left: 1.585731e-01	ci right 1.605104e-01	k: 87747	n:550000
UGT2B15   550000 perm   233 sec   (2360 perm/sec)   p_kst 1.595400e-01   p_cons 1.047273e-03   p_joint 9.981818e-04

Joint ci ratio: 1.663121e-01	ci left: 9.086470e-04	ci right 1.075156e-03	k: 554	n:560000
Cons ci ratio: 1.622651e-01	ci left: 9.565935e-04	ci right 1.127208e-03	k: 582	n:560000
KS ci ratio: 1.202535e-02	ci left: 1.585294e-01	ci right 1.604491e-01	k: 89313	n:560000
UGT2B15   560000 perm   239 sec   (2339 perm/sec)   p_kst 1.594875e-01   p_cons 1.039286e-03   p_joint 9.892857e-04

Joint ci ratio: 1.713308e-01	ci left: 8.389344e-04	ci right 9.977877e-04	k: 522	n:570000
Cons ci ratio: 1.610272e-01	ci left: 9.549618e-04	ci right 1.123860e-03	k: 591	n:570000
KS ci ratio: 1.191837e-02	ci left: 1.585608e-01	ci right 1.604637e-01	k: 90921	n:570000
UGT2B15   570000 perm   246 sec   (2318 perm/sec)   p_kst 1.595105e-01   p_cons 1.036842e-03   p_joint 9.157895e-04

Joint ci ratio: 1.795990e-01	ci left: 7.469891e-04	ci right 8.960008e-04	k: 475	n:580000
Cons ci ratio: 1.592874e-01	ci left: 9.600127e-04	ci right 1.127794e-03	k: 604	n:580000
KS ci ratio: 1.182112e-02	ci left: 1.584347e-01	ci right 1.603204e-01	k: 92438	n:580000
UGT2B15   580000 perm   252 sec   (2299 perm/sec)   p_kst 1.593759e-01   p_cons 1.041379e-03   p_joint 8.189655e-04

Joint ci ratio: 1.777414e-01	ci left: 7.505196e-04	ci right 8.985206e-04	k: 485	n:590000
Cons ci ratio: 1.578587e-01	ci left: 9.616456e-04	ci right 1.128062e-03	k: 615	n:590000
KS ci ratio: 1.171768e-02	ci left: 1.585074e-01	ci right 1.603773e-01	k: 94070	n:590000
UGT2B15   590000 perm   259 sec   (2277 perm/sec)   p_kst 1.594407e-01   p_cons 1.042373e-03   p_joint 8.220339e-04

Joint ci ratio: 1.771961e-01	ci left: 7.427886e-04	ci right 8.887675e-04	k: 488	n:600000
Cons ci ratio: 1.567182e-01	ci left: 9.600277e-04	ci right 1.124851e-03	k: 624	n:600000
KS ci ratio: 1.161604e-02	ci left: 1.585976e-01	ci right 1.604523e-01	k: 95714	n:600000
UGT2B15   600000 perm   266 sec   (2259 perm/sec)   p_kst 1.595233e-01   p_cons 1.040000e-03   p_joint 8.133333e-04

Joint ci ratio: 1.766558e-01	ci left: 7.353117e-04	ci right 8.793334e-04	k: 491	n:610000
Cons ci ratio: 1.556020e-01	ci left: 9.584670e-04	ci right 1.121741e-03	k: 633	n:610000
KS ci ratio: 1.152200e-02	ci left: 1.585689e-01	ci right 1.604081e-01	k: 97287	n:610000
UGT2B15   610000 perm   272 sec   (2242 perm/sec)   p_kst 1.594869e-01   p_cons 1.037705e-03   p_joint 8.049180e-04

Joint ci ratio: 1.723294e-01	ci left: 7.620145e-04	ci right 9.072311e-04	k: 516	n:620000
Cons ci ratio: 1.539115e-01	ci left: 9.647143e-04	ci right 1.127103e-03	k: 647	n:620000
KS ci ratio: 1.142726e-02	ci left: 1.586103e-01	ci right 1.604348e-01	k: 98903	n:620000
UGT2B15   620000 perm   279 sec   (2224 perm/sec)   p_kst 1.595210e-01   p_cons 1.043548e-03   p_joint 8.322581e-04

Joint ci ratio: 1.731706e-01	ci left: 7.423250e-04	ci right 8.845522e-04	k: 511	n:630000
Cons ci ratio: 1.529705e-01	ci left: 9.616122e-04	ci right 1.122398e-03	k: 655	n:630000
KS ci ratio: 1.133420e-02	ci left: 1.586647e-01	ci right 1.604749e-01	k: 100528	n:630000
UGT2B15   630000 perm   286 sec   (2204 perm/sec)   p_kst 1.595683e-01   p_cons 1.039683e-03   p_joint 8.111111e-04

Joint ci ratio: 1.459061e-01	ci left: 1.044357e-03	ci right 1.210212e-03	k: 720	n:640000
Cons ci ratio: 1.514766e-01	ci left: 9.661259e-04	ci right 1.125946e-03	k: 668	n:640000
KS ci ratio: 1.124660e-02	ci left: 1.586411e-01	ci right 1.604369e-01	k: 102104	n:640000
UGT2B15   640000 perm   293 sec   (2187 perm/sec)   p_kst 1.595375e-01   p_cons 1.043750e-03   p_joint 1.125000e-03

Joint ci ratio: 1.455038e-01	ci left: 1.034219e-03	ci right 1.197972e-03	k: 724	n:650000
Cons ci ratio: 1.505792e-01	ci left: 9.631049e-04	ci right 1.121396e-03	k: 676	n:650000
KS ci ratio: 1.116259e-02	ci left: 1.585799e-01	ci right 1.603616e-01	k: 103655	n:650000
UGT2B15   650000 perm   300 sec   (2169 perm/sec)   p_kst 1.594692e-01   p_cons 1.040000e-03   p_joint 1.113846e-03

Joint ci ratio: 1.446093e-01	ci left: 1.031691e-03	ci right 1.193952e-03	k: 733	n:660000
Cons ci ratio: 1.500269e-01	ci left: 9.558030e-04	ci right 1.112266e-03	k: 681	n:660000
KS ci ratio: 1.107524e-02	ci left: 1.586461e-01	ci right 1.604144e-01	k: 105289	n:660000
UGT2B15   660000 perm   307 sec   (2151 perm/sec)   p_kst 1.595288e-01   p_cons 1.031818e-03   p_joint 1.110606e-03

Joint ci ratio: 1.428673e-01	ci left: 1.042192e-03	ci right 1.203962e-03	k: 751	n:670000
Cons ci ratio: 1.490468e-01	ci left: 9.544675e-04	ci right 1.109600e-03	k: 690	n:670000
KS ci ratio: 1.099230e-02	ci left: 1.586523e-01	ci right 1.604074e-01	k: 106884	n:670000
UGT2B15   670000 perm   314 sec   (2134 perm/sec)   p_kst 1.595284e-01   p_cons 1.029851e-03   p_joint 1.120896e-03

Joint ci ratio: 1.428685e-01	ci left: 1.026865e-03	ci right 1.186257e-03	k: 751	n:680000
Cons ci ratio: 1.477690e-01	ci left: 9.574231e-04	ci right 1.111584e-03	k: 702	n:680000
KS ci ratio: 1.091072e-02	ci left: 1.586701e-01	ci right 1.604122e-01	k: 108487	n:680000
UGT2B15   680000 perm   321 sec   (2118 perm/sec)   p_kst 1.595397e-01   p_cons 1.032353e-03   p_joint 1.104412e-03

Joint ci ratio: 1.416492e-01	ci left: 1.030153e-03	ci right 1.188576e-03	k: 764	n:690000
Cons ci ratio: 1.463189e-01	ci left: 9.630909e-04	ci right 1.116510e-03	k: 716	n:690000
KS ci ratio: 1.083355e-02	ci left: 1.586223e-01	ci right 1.603515e-01	k: 110045	n:690000
UGT2B15   690000 perm   328 sec   (2101 perm/sec)   p_kst 1.594855e-01   p_cons 1.037681e-03   p_joint 1.107246e-03

Joint ci ratio: 1.484065e-01	ci left: 9.218130e-04	ci right 1.070938e-03	k: 696	n:700000
Cons ci ratio: 1.447126e-01	ci left: 9.713577e-04	ci right 1.124248e-03	k: 732	n:700000
KS ci ratio: 1.075520e-02	ci left: 1.586458e-01	ci right 1.603627e-01	k: 111652	n:700000
UGT2B15   700000 perm   336 sec   (2085 perm/sec)   p_kst 1.595029e-01   p_cons 1.045714e-03   p_joint 9.942857e-04

Joint ci ratio: 1.475623e-01	ci left: 9.196800e-04	ci right 1.067539e-03	k: 704	n:710000
Cons ci ratio: 1.440268e-01	ci left: 9.671795e-04	ci right 1.118629e-03	k: 739	n:710000
KS ci ratio: 1.067891e-02	ci left: 1.586589e-01	ci right 1.603636e-01	k: 113252	n:710000
UGT2B15   710000 perm   343 sec   (2069 perm/sec)   p_kst 1.595099e-01   p_cons 1.040845e-03   p_joint 9.915493e-04

Joint ci ratio: 1.467323e-01	ci left: 9.176087e-04	ci right 1.064232e-03	k: 712	n:720000
Cons ci ratio: 1.433508e-01	ci left: 9.631190e-04	ci right 1.113164e-03	k: 746	n:720000
KS ci ratio: 1.060428e-02	ci left: 1.586702e-01	ci right 1.603631e-01	k: 114851	n:720000
UGT2B15   720000 perm   351 sec   (2053 perm/sec)   p_kst 1.595153e-01   p_cons 1.036111e-03   p_joint 9.888889e-04

Joint ci ratio: 1.458150e-01	ci left: 9.169162e-04	ci right 1.062433e-03	k: 721	n:730000
Cons ci ratio: 1.424951e-01	ci left: 9.618135e-04	ci right 1.110685e-03	k: 755	n:730000
KS ci ratio: 1.053098e-02	ci left: 1.586867e-01	ci right 1.603680e-01	k: 116454	n:730000
UGT2B15   730000 perm   358 sec   (2038 perm/sec)   p_kst 1.595260e-01   p_cons 1.034247e-03   p_joint 9.876712e-04

Joint ci ratio: 1.444211e-01	ci left: 9.227577e-04	ci right 1.067681e-03	k: 735	n:740000
Cons ci ratio: 1.414695e-01	ci left: 9.631529e-04	ci right 1.111068e-03	k: 766	n:740000
KS ci ratio: 1.045775e-02	ci left: 1.587393e-01	ci right 1.604094e-01	k: 118084	n:740000
UGT2B15   740000 perm   366 sec   (2022 perm/sec)   p_kst 1.595730e-01   p_cons 1.035135e-03   p_joint 9.932432e-04

Joint ci ratio: 1.436428e-01	ci left: 9.207364e-04	ci right 1.064496e-03	k: 743	n:750000
Cons ci ratio: 1.409198e-01	ci left: 9.580280e-04	ci right 1.104536e-03	k: 772	n:750000
KS ci ratio: 1.038680e-02	ci left: 1.587705e-01	ci right 1.604295e-01	k: 119699	n:750000
UGT2B15   750000 perm   374 sec   (2007 perm/sec)   p_kst 1.595987e-01   p_cons 1.029333e-03   p_joint 9.906667e-04

Joint ci ratio: 1.550075e-01	ci left: 7.756135e-04	ci right 9.071865e-04	k: 638	n:760000
Cons ci ratio: 1.397494e-01	ci left: 9.619272e-04	ci right 1.107708e-03	k: 785	n:760000
KS ci ratio: 1.031824e-02	ci left: 1.587759e-01	ci right 1.604240e-01	k: 121295	n:760000
UGT2B15   760000 perm   381 sec   (1994 perm/sec)   p_kst 1.595987e-01   p_cons 1.032895e-03   p_joint 8.394737e-04

Joint ci ratio: 1.534539e-01	ci left: 7.817723e-04	ci right 9.129388e-04	k: 651	n:770000
Cons ci ratio: 1.388688e-01	ci left: 9.619691e-04	ci right 1.106762e-03	k: 795	n:770000
KS ci ratio: 1.025216e-02	ci left: 1.587515e-01	ci right 1.603887e-01	k: 122868	n:770000
UGT2B15   770000 perm   389 sec   (1979 perm/sec)   p_kst 1.595688e-01   p_cons 1.032468e-03   p_joint 8.454545e-04

Joint ci ratio: 1.529858e-01	ci left: 7.766810e-04	ci right 9.065593e-04	k: 655	n:780000
Cons ci ratio: 1.380047e-01	ci left: 9.620126e-04	ci right 1.105837e-03	k: 805	n:780000
KS ci ratio: 1.018816e-02	ci left: 1.587060e-01	ci right 1.603324e-01	k: 124424	n:780000
UGT2B15   780000 perm   397 sec   (1964 perm/sec)   p_kst 1.595179e-01   p_cons 1.032051e-03   p_joint 8.397436e-04

Joint ci ratio: 1.512655e-01	ci left: 7.851145e-04	ci right 9.147931e-04	k: 670	n:790000
Cons ci ratio: 1.371565e-01	ci left: 9.620577e-04	ci right 1.104933e-03	k: 815	n:790000
KS ci ratio: 1.012253e-02	ci left: 1.587362e-01	ci right 1.603524e-01	k: 126039	n:790000
UGT2B15   790000 perm   405 sec   (1949 perm/sec)   p_kst 1.595430e-01   p_cons 1.031646e-03   p_joint 8.481013e-04

Joint ci ratio: 1.500405e-01	ci left: 7.885323e-04	ci right 9.176260e-04	k: 681	n:800000
Cons ci ratio: 1.363237e-01	ci left: 9.621044e-04	ci right 1.104048e-03	k: 825	n:800000
KS ci ratio: 1.005970e-02	ci left: 1.587245e-01	ci right 1.603305e-01	k: 127621	n:800000
UGT2B15   800000 perm   414 sec   (1935 perm/sec)   p_kst 1.595263e-01   p_cons 1.031250e-03   p_joint 8.512500e-04

Joint ci ratio: 1.490601e-01	ci left: 7.894927e-04	ci right 9.178238e-04	k: 690	n:810000
Cons ci ratio: 1.353440e-01	ci left: 9.645380e-04	ci right 1.105736e-03	k: 837	n:810000
KS ci ratio: 9.998478e-03	ci left: 1.587008e-01	ci right 1.602967e-01	k: 129193	n:810000
UGT2B15   810000 perm   422 sec   (1920 perm/sec)   p_kst 1.594975e-01   p_cons 1.033333e-03   p_joint 8.518519e-04

Joint ci ratio: 1.484174e-01	ci left: 7.869095e-04	ci right 9.142202e-04	k: 696	n:820000
Cons ci ratio: 1.351030e-01	ci left: 9.563099e-04	ci right 1.096034e-03	k: 840	n:820000
KS ci ratio: 9.936827e-03	ci left: 1.587191e-01	ci right 1.603053e-01	k: 130799	n:820000
UGT2B15   820000 perm   430 sec   (1906 perm/sec)   p_kst 1.595110e-01   p_cons 1.024390e-03   p_joint 8.487805e-04

Joint ci ratio: 1.469484e-01	ci left: 7.936730e-04	ci right 9.206955e-04	k: 710	n:830000
Cons ci ratio: 1.342280e-01	ci left: 9.575946e-04	ci right 1.096528e-03	k: 851	n:830000
KS ci ratio: 9.875415e-03	ci left: 1.587610e-01	ci right 1.603378e-01	k: 132425	n:830000
UGT2B15   830000 perm   438 sec   (1893 perm/sec)   p_kst 1.595482e-01   p_cons 1.025301e-03   p_joint 8.554217e-04

Joint ci ratio: 1.459257e-01	ci left: 7.956932e-04	ci right 9.220754e-04	k: 720	n:840000
Cons ci ratio: 1.333697e-01	ci left: 9.588516e-04	ci right 1.097007e-03	k: 862	n:840000
KS ci ratio: 9.815041e-03	ci left: 1.588043e-01	ci right 1.603718e-01	k: 134053	n:840000
UGT2B15   840000 perm   447 sec   (1879 perm/sec)   p_kst 1.595869e-01   p_cons 1.026190e-03   p_joint 8.571429e-04

Joint ci ratio: 1.447260e-01	ci left: 7.999365e-04	ci right 9.258579e-04	k: 732	n:850000
Cons ci ratio: 1.323762e-01	ci left: 9.623569e-04	ci right 1.099903e-03	k: 875	n:850000
KS ci ratio: 9.756017e-03	ci left: 1.588396e-01	ci right 1.603980e-01	k: 135675	n:850000
UGT2B15   850000 perm   455 sec   (1866 perm/sec)   p_kst 1.596176e-01   p_cons 1.029412e-03   p_joint 8.611765e-04

Joint ci ratio: 1.444312e-01	ci left: 7.939969e-04	ci right 9.187069e-04	k: 735	n:860000
Cons ci ratio: 1.316270e-01	ci left: 9.624106e-04	ci right 1.099126e-03	k: 885	n:860000
KS ci ratio: 9.699643e-03	ci left: 1.588300e-01	ci right 1.603793e-01	k: 137259	n:860000
UGT2B15   860000 perm   464 sec   (1854 perm/sec)   p_kst 1.596035e-01   p_cons 1.029070e-03   p_joint 8.546512e-04

Joint ci ratio: 1.455244e-01	ci left: 7.726849e-04	ci right 8.950458e-04	k: 724	n:870000
Cons ci ratio: 1.310370e-01	ci left: 9.602416e-04	ci right 1.095989e-03	k: 893	n:870000
KS ci ratio: 9.641260e-03	ci left: 1.589033e-01	ci right 1.604438e-01	k: 138915	n:870000
UGT2B15   870000 perm   473 sec   (1841 perm/sec)   p_kst 1.596724e-01   p_cons 1.026437e-03   p_joint 8.321839e-04

Joint ci ratio: 1.447281e-01	ci left: 7.726652e-04	ci right 8.942956e-04	k: 732	n:880000
Cons ci ratio: 1.303824e-01	ci left: 9.592226e-04	ci right 1.094096e-03	k: 902	n:880000
KS ci ratio: 9.584284e-03	ci left: 1.589647e-01	ci right 1.604967e-01	k: 140562	n:880000
UGT2B15   880000 perm   481 sec   (1828 perm/sec)   p_kst 1.597295e-01   p_cons 1.025000e-03   p_joint 8.318182e-04

Joint ci ratio: 1.411141e-01	ci left: 8.051546e-04	ci right 9.284683e-04	k: 770	n:890000
Cons ci ratio: 1.299517e-01	ci left: 9.549667e-04	ci right 1.088764e-03	k: 908	n:890000
KS ci ratio: 9.530778e-03	ci left: 1.589552e-01	ci right 1.604785e-01	k: 142147	n:890000
UGT2B15   890000 perm   490 sec   (1816 perm/sec)   p_kst 1.597157e-01   p_cons 1.020225e-03   p_joint 8.651685e-04

Joint ci ratio: 1.416676e-01	ci left: 7.897771e-04	ci right 9.112502e-04	k: 764	n:900000
Cons ci ratio: 1.295252e-01	ci left: 9.508061e-04	ci right 1.083550e-03	k: 914	n:900000
KS ci ratio: 9.476198e-03	ci left: 1.590014e-01	ci right 1.605164e-01	k: 143782	n:900000
UGT2B15   900000 perm   499 sec   (1804 perm/sec)   p_kst 1.597578e-01   p_cons 1.015556e-03   p_joint 8.488889e-04

Joint ci ratio: 1.056731e-01	ci left: 1.430085e-03	ci right 1.590697e-03	k: 1373	n:910000
Cons ci ratio: 1.280632e-01	ci left: 9.626915e-04	ci right 1.095463e-03	k: 935	n:910000
KS ci ratio: 9.425591e-03	ci left: 1.589599e-01	ci right 1.604664e-01	k: 145338	n:910000
UGT2B15   910000 perm   508 sec   (1791 perm/sec)   p_kst 1.597121e-01   p_cons 1.027473e-03   p_joint 1.508791e-03

Joint ci ratio: 1.132760e-01	ci left: 1.226347e-03	ci right 1.374648e-03	k: 1195	n:920000
Cons ci ratio: 1.269154e-01	ci left: 9.701167e-04	ci right 1.102622e-03	k: 952	n:920000
KS ci ratio: 9.374724e-03	ci left: 1.589498e-01	ci right 1.604480e-01	k: 146922	n:920000
UGT2B15   920000 perm   517 sec   (1779 perm/sec)   p_kst 1.596978e-01   p_cons 1.034783e-03   p_joint 1.298913e-03

Joint ci ratio: 1.124791e-01	ci left: 1.230924e-03	ci right 1.378662e-03	k: 1212	n:930000
Cons ci ratio: 1.261892e-01	ci left: 9.711389e-04	ci right 1.102968e-03	k: 963	n:930000
KS ci ratio: 9.326017e-03	ci left: 1.589013e-01	ci right 1.603912e-01	k: 148470	n:930000
UGT2B15   930000 perm   526 sec   (1767 perm/sec)   p_kst 1.596452e-01   p_cons 1.035484e-03   p_joint 1.303226e-03

Joint ci ratio: 1.120185e-01	ci left: 1.228168e-03	ci right 1.374932e-03	k: 1222	n:940000
Cons ci ratio: 1.257337e-01	ci left: 9.680197e-04	ci right 1.098916e-03	k: 970	n:940000
KS ci ratio: 9.277729e-03	ci left: 1.588633e-01	ci right 1.603451e-01	k: 150027	n:940000
UGT2B15   940000 perm   535 sec   (1755 perm/sec)   p_kst 1.596032e-01   p_cons 1.031915e-03   p_joint 1.300000e-03

Joint ci ratio: 1.014733e-01	ci left: 1.488817e-03	ci right 1.648983e-03	k: 1489	n:950000
Cons ci ratio: 1.246469e-01	ci left: 9.751645e-04	ci right 1.105803e-03	k: 987	n:950000
KS ci ratio: 9.227214e-03	ci left: 1.589124e-01	ci right 1.603865e-01	k: 151666	n:950000
UGT2B15   950000 perm   545 sec   (1744 perm/sec)   p_kst 1.596484e-01   p_cons 1.038947e-03   p_joint 1.567368e-03

Joint ci ratio: 1.009328e-01	ci left: 1.489553e-03	ci right 1.648895e-03	k: 1505	n:960000
Cons ci ratio: 1.237110e-01	ci left: 9.801464e-04	ci right 1.110394e-03	k: 1002	n:960000
KS ci ratio: 9.177338e-03	ci left: 1.589656e-01	ci right 1.604323e-01	k: 153310	n:960000
UGT2B15   960000 perm   554 sec   (1732 perm/sec)   p_kst 1.596979e-01   p_cons 1.043750e-03   p_joint 1.567708e-03

Joint ci ratio: 1.004670e-01	ci left: 1.488267e-03	ci right 1.646692e-03	k: 1519	n:970000
Cons ci ratio: 1.232207e-01	ci left: 9.780344e-04	ci right 1.107449e-03	k: 1010	n:970000
KS ci ratio: 9.130400e-03	ci left: 1.589550e-01	ci right 1.604140e-01	k: 154893	n:970000
UGT2B15   970000 perm   564 sec   (1721 perm/sec)   p_kst 1.596835e-01   p_cons 1.041237e-03   p_joint 1.565979e-03

Joint ci ratio: 9.984476e-02	ci left: 1.491982e-03	ci right 1.649762e-03	k: 1538	n:980000
Cons ci ratio: 1.225558e-01	ci left: 9.789339e-04	ci right 1.107718e-03	k: 1021	n:980000
KS ci ratio: 9.084072e-03	ci left: 1.589477e-01	ci right 1.603992e-01	k: 156479	n:980000
UGT2B15   980000 perm   573 sec   (1710 perm/sec)   p_kst 1.596724e-01   p_cons 1.041837e-03   p_joint 1.569388e-03

Joint ci ratio: 9.952223e-02	ci left: 1.486761e-03	ci right 1.643451e-03	k: 1548	n:990000
Cons ci ratio: 1.221979e-01	ci left: 9.749207e-04	ci right 1.102775e-03	k: 1027	n:990000
KS ci ratio: 9.039530e-03	ci left: 1.589083e-01	ci right 1.603523e-01	k: 158033	n:990000
UGT2B15   990000 perm   583 sec   (1699 perm/sec)   p_kst 1.596293e-01   p_cons 1.037374e-03   p_joint 1.563636e-03

Joint ci ratio: 9.894886e-02	ci left: 1.489447e-03	ci right 1.645463e-03	k: 1566	n:1000000
Cons ci ratio: 1.214323e-01	ci left: 9.777754e-04	ci right 1.105143e-03	k: 1040	n:1000000
KS ci ratio: 8.994129e-03	ci left: 1.589146e-01	ci right 1.603514e-01	k: 159632	n:1000000
UGT2B15   1000000 perm   592 sec   (1688 perm/sec)   p_kst 1.596320e-01   p_cons 1.040000e-03   p_joint 1.566000e-03

Joint ci ratio: 9.832318e-02	ci left: 1.494013e-03	ci right 1.649462e-03	k: 1586	n:1010000
Cons ci ratio: 1.205094e-01	ci left: 9.834569e-04	ci right 1.110522e-03	k: 1056	n:1010000
KS ci ratio: 8.950329e-03	ci left: 1.588932e-01	ci right 1.603227e-01	k: 161203	n:1010000
UGT2B15   1010000 perm   602 sec   (1677 perm/sec)   p_kst 1.596069e-01   p_cons 1.045545e-03   p_joint 1.570297e-03

Joint ci ratio: 9.789242e-02	ci left: 1.492755e-03	ci right 1.647353e-03	k: 1600	n:1020000
Cons ci ratio: 1.191634e-01	ci left: 9.966397e-04	ci right 1.123868e-03	k: 1080	n:1020000
KS ci ratio: 8.908368e-03	ci left: 1.588359e-01	ci right 1.602582e-01	k: 162737	n:1020000
UGT2B15   1020000 perm   612 sec   (1667 perm/sec)   p_kst 1.595461e-01   p_cons 1.058824e-03   p_joint 1.568627e-03

Joint ci ratio: 1.011064e-01	ci left: 1.383586e-03	ci right 1.531862e-03	k: 1500	n:1030000
Cons ci ratio: 1.187250e-01	ci left: 9.944994e-04	ci right 1.120955e-03	k: 1088	n:1030000
KS ci ratio: 8.864423e-03	ci left: 1.588573e-01	ci right 1.602727e-01	k: 164351	n:1030000
UGT2B15   1030000 perm   621 sec   (1657 perm/sec)   p_kst 1.595641e-01   p_cons 1.056311e-03   p_joint 1.456311e-03

Joint ci ratio: 1.007382e-01	ci left: 1.380592e-03	ci right 1.527976e-03	k: 1511	n:1040000
Cons ci ratio: 1.179689e-01	ci left: 9.980000e-04	ci right 1.124036e-03	k: 1102	n:1040000
KS ci ratio: 8.822514e-03	ci left: 1.588361e-01	ci right 1.602446e-01	k: 165921	n:1040000
UGT2B15   1040000 perm   631 sec   (1648 perm/sec)   p_kst 1.595394e-01   p_cons 1.059615e-03   p_joint 1.452885e-03

Joint ci ratio: 1.019617e-01	ci left: 1.334025e-03	ci right 1.478271e-03	k: 1475	n:1050000
Cons ci ratio: 1.171222e-01	ci left: 1.003286e-03	ci right 1.129017e-03	k: 1118	n:1050000
KS ci ratio: 8.780758e-03	ci left: 1.588287e-01	ci right 1.602304e-01	k: 167505	n:1050000
UGT2B15   1050000 perm   641 sec   (1638 perm/sec)   p_kst 1.595286e-01   p_cons 1.064762e-03   p_joint 1.404762e-03

Joint ci ratio: 1.013794e-01	ci left: 1.337070e-03	ci right 1.480771e-03	k: 1492	n:1060000
Cons ci ratio: 1.167059e-01	ci left: 1.001147e-03	ci right 1.126133e-03	k: 1126	n:1060000
KS ci ratio: 8.740849e-03	ci left: 1.587827e-01	ci right 1.601776e-01	k: 169048	n:1060000
UGT2B15   1060000 perm   651 sec   (1629 perm/sec)   p_kst 1.594792e-01   p_cons 1.062264e-03   p_joint 1.407547e-03

Joint ci ratio: 1.008405e-01	ci left: 1.339150e-03	ci right 1.482263e-03	k: 1508	n:1070000
Cons ci ratio: 1.156835e-01	ci left: 1.009939e-03	ci right 1.134843e-03	k: 1146	n:1070000
KS ci ratio: 8.699538e-03	ci left: 1.587974e-01	ci right 1.601858e-01	k: 170655	n:1070000
UGT2B15   1070000 perm   661 sec   (1618 perm/sec)   p_kst 1.594907e-01   p_cons 1.071028e-03   p_joint 1.409346e-03

Joint ci ratio: 9.940029e-02	ci left: 1.366472e-03	ci right 1.510298e-03	k: 1552	n:1080000
Cons ci ratio: 1.149341e-01	ci left: 1.014076e-03	ci right 1.138624e-03	k: 1161	n:1080000
KS ci ratio: 8.658897e-03	ci left: 1.588090e-01	ci right 1.601910e-01	k: 172259	n:1080000
UGT2B15   1080000 perm   671 sec   (1609 perm/sec)   p_kst 1.594991e-01   p_cons 1.075000e-03   p_joint 1.437037e-03

Joint ci ratio: 9.876610e-02	ci left: 1.371829e-03	ci right 1.515245e-03	k: 1572	n:1090000
Cons ci ratio: 1.143939e-01	ci left: 1.014575e-03	ci right 1.138559e-03	k: 1172	n:1090000
KS ci ratio: 8.616875e-03	ci left: 1.588809e-01	ci right 1.602567e-01	k: 173929	n:1090000
UGT2B15   1090000 perm   681 sec   (1601 perm/sec)   p_kst 1.595679e-01   p_cons 1.075229e-03   p_joint 1.442202e-03

Joint ci ratio: 9.832951e-02	ci left: 1.371772e-03	ci right 1.514511e-03	k: 1586	n:1100000
Cons ci ratio: 1.138613e-01	ci left: 1.015066e-03	ci right 1.138494e-03	k: 1183	n:1100000
KS ci ratio: 8.577696e-03	ci left: 1.588816e-01	ci right 1.602511e-01	k: 175522	n:1100000
UGT2B15   1100000 perm   691 sec   (1592 perm/sec)   p_kst 1.595655e-01   p_cons 1.075455e-03   p_joint 1.441818e-03

Joint ci ratio: 9.799065e-02	ci left: 1.369080e-03	ci right 1.511020e-03	k: 1597	n:1110000
Cons ci ratio: 1.134787e-01	ci left: 1.012924e-03	ci right 1.135650e-03	k: 1191	n:1110000
KS ci ratio: 8.537498e-03	ci left: 1.589308e-01	ci right 1.602944e-01	k: 177169	n:1110000
UGT2B15   1110000 perm   701 sec   (1583 perm/sec)   p_kst 1.596117e-01   p_cons 1.072973e-03   p_joint 1.438739e-03

Joint ci ratio: 1.006435e-01	ci left: 1.284586e-03	ci right 1.421585e-03	k: 1514	n:1120000
Cons ci ratio: 1.130057e-01	ci left: 1.012555e-03	ci right 1.134691e-03	k: 1201	n:1120000
KS ci ratio: 8.497464e-03	ci left: 1.589917e-01	ci right 1.603494e-01	k: 178830	n:1120000
UGT2B15   1120000 perm   712 sec   (1574 perm/sec)   p_kst 1.596696e-01   p_cons 1.072321e-03   p_joint 1.351786e-03

Joint ci ratio: 1.001161e-01	ci left: 1.287022e-03	ci right 1.423519e-03	k: 1530	n:1130000
Cons ci ratio: 1.123532e-01	ci left: 1.015635e-03	ci right 1.137388e-03	k: 1215	n:1130000
KS ci ratio: 8.458769e-03	ci left: 1.590268e-01	ci right 1.603785e-01	k: 180463	n:1130000
UGT2B15   1130000 perm   722 sec   (1565 perm/sec)   p_kst 1.597018e-01   p_cons 1.075221e-03   p_joint 1.353982e-03

Joint ci ratio: 1.003796e-01	ci left: 1.268890e-03	ci right 1.403839e-03	k: 1522	n:1140000
Cons ci ratio: 1.116663e-01	ci left: 1.019515e-03	ci right 1.140937e-03	k: 1230	n:1140000
KS ci ratio: 8.420955e-03	ci left: 1.590499e-01	ci right 1.603957e-01	k: 182083	n:1140000
UGT2B15   1140000 perm   733 sec   (1555 perm/sec)   p_kst 1.597219e-01   p_cons 1.078947e-03   p_joint 1.335088e-03

Joint ci ratio: 9.988887e-02	ci left: 1.270573e-03	ci right 1.405002e-03	k: 1537	n:1150000
Cons ci ratio: 1.110366e-01	ci left: 1.022485e-03	ci right 1.143529e-03	k: 1244	n:1150000
KS ci ratio: 8.386578e-03	ci left: 1.589788e-01	ci right 1.603186e-01	k: 183595	n:1150000
UGT2B15   1150000 perm   744 sec   (1546 perm/sec)   p_kst 1.596478e-01   p_cons 1.081739e-03   p_joint 1.336522e-03

Joint ci ratio: 9.946939e-02	ci left: 1.270548e-03	ci right 1.404376e-03	k: 1550	n:1160000
Cons ci ratio: 1.104612e-01	ci left: 1.024567e-03	ci right 1.145188e-03	k: 1257	n:1160000
KS ci ratio: 8.350444e-03	ci left: 1.589787e-01	ci right 1.603127e-01	k: 185188	n:1160000
UGT2B15   1160000 perm   754 sec   (1539 perm/sec)   p_kst 1.596448e-01   p_cons 1.083621e-03   p_joint 1.336207e-03

Joint ci ratio: 9.880244e-02	ci left: 1.277192e-03	ci right 1.410766e-03	k: 1571	n:1170000
Cons ci ratio: 1.101118e-01	ci left: 1.022459e-03	ci right 1.142426e-03	k: 1265	n:1170000
KS ci ratio: 8.313476e-03	ci left: 1.590204e-01	ci right 1.603488e-01	k: 186830	n:1170000
UGT2B15   1170000 perm   764 sec   (1530 perm/sec)   p_kst 1.596838e-01   p_cons 1.081197e-03   p_joint 1.342735e-03

Joint ci ratio: 9.839644e-02	ci left: 1.277114e-03	ci right 1.410099e-03	k: 1584	n:1180000
Cons ci ratio: 1.095078e-01	ci left: 1.025333e-03	ci right 1.144935e-03	k: 1279	n:1180000
KS ci ratio: 8.279634e-03	ci left: 1.589760e-01	ci right 1.602986e-01	k: 188371	n:1180000
UGT2B15   1180000 perm   775 sec   (1523 perm/sec)   p_kst 1.596364e-01   p_cons 1.083898e-03   p_joint 1.342373e-03

Joint ci ratio: 9.442374e-02	ci left: 1.377916e-03	ci right 1.515285e-03	k: 1720	n:1190000
Cons ci ratio: 1.090826e-01	ci left: 1.024890e-03	ci right 1.143946e-03	k: 1289	n:1190000
KS ci ratio: 8.244627e-03	ci left: 1.589835e-01	ci right 1.603005e-01	k: 189973	n:1190000
UGT2B15   1190000 perm   786 sec   (1515 perm/sec)   p_kst 1.596412e-01   p_cons 1.083193e-03   p_joint 1.445378e-03

Joint ci ratio: 9.404202e-02	ci left: 1.377826e-03	ci right 1.514599e-03	k: 1734	n:1200000
Cons ci ratio: 1.086623e-01	ci left: 1.024456e-03	ci right 1.142974e-03	k: 1299	n:1200000
KS ci ratio: 8.209806e-03	ci left: 1.589992e-01	ci right 1.603108e-01	k: 191585	n:1200000
UGT2B15   1200000 perm   796 sec   (1507 perm/sec)   p_kst 1.596542e-01   p_cons 1.082500e-03   p_joint 1.445000e-03

Joint ci ratio: 9.355782e-02	ci left: 1.380966e-03	ci right 1.517306e-03	k: 1752	n:1210000
Cons ci ratio: 1.082882e-01	ci left: 1.023225e-03	ci right 1.141167e-03	k: 1308	n:1210000
KS ci ratio: 8.176983e-03	ci left: 1.589635e-01	ci right 1.602695e-01	k: 193135	n:1210000
UGT2B15   1210000 perm   807 sec   (1499 perm/sec)   p_kst 1.596157e-01   p_cons 1.080992e-03   p_joint 1.447934e-03

Joint ci ratio: 9.302844e-02	ci left: 1.385657e-03	ci right 1.521645e-03	k: 1772	n:1220000
Cons ci ratio: 1.079179e-01	ci left: 1.022016e-03	ci right 1.139390e-03	k: 1317	n:1220000
KS ci ratio: 8.145023e-03	ci left: 1.589129e-01	ci right 1.602133e-01	k: 194666	n:1220000
UGT2B15   1220000 perm   818 sec   (1491 perm/sec)   p_kst 1.595623e-01   p_cons 1.079508e-03   p_joint 1.452459e-03

Joint ci ratio: 9.274132e-02	ci left: 1.383127e-03	ci right 1.518425e-03	k: 1783	n:1230000
Cons ci ratio: 1.073895e-01	ci left: 1.023991e-03	ci right 1.140980e-03	k: 1330	n:1230000
KS ci ratio: 8.111321e-03	ci left: 1.589329e-01	ci right 1.602281e-01	k: 196283	n:1230000
UGT2B15   1230000 perm   829 sec   (1483 perm/sec)   p_kst 1.595797e-01   p_cons 1.081301e-03   p_joint 1.449593e-03

Joint ci ratio: 9.240531e-02	ci left: 1.382214e-03	ci right 1.516906e-03	k: 1796	n:1240000
Cons ci ratio: 1.071084e-01	ci left: 1.021227e-03	ci right 1.137575e-03	k: 1337	n:1240000
KS ci ratio: 8.079247e-03	ci left: 1.589123e-01	ci right 1.602022e-01	k: 197850	n:1240000
UGT2B15   1240000 perm   840 sec   (1475 perm/sec)   p_kst 1.595565e-01   p_cons 1.078226e-03   p_joint 1.448387e-03

Joint ci ratio: 9.202203e-02	ci left: 1.382880e-03	ci right 1.517047e-03	k: 1811	n:1250000
Cons ci ratio: 1.066312e-01	ci left: 1.022400e-03	ci right 1.138331e-03	k: 1349	n:1250000
KS ci ratio: 8.047623e-03	ci left: 1.588897e-01	ci right 1.601743e-01	k: 199414	n:1250000
UGT2B15   1250000 perm   852 sec   (1468 perm/sec)   p_kst 1.595312e-01   p_cons 1.079200e-03   p_joint 1.448800e-03

Joint ci ratio: 9.166860e-02	ci left: 1.382760e-03	ci right 1.516374e-03	k: 1825	n:1260000
Cons ci ratio: 1.062776e-01	ci left: 1.021239e-03	ci right 1.136630e-03	k: 1358	n:1260000
KS ci ratio: 8.014304e-03	ci left: 1.589363e-01	ci right 1.602160e-01	k: 201065	n:1260000
UGT2B15   1260000 perm   863 sec   (1460 perm/sec)   p_kst 1.595754e-01   p_cons 1.077778e-03   p_joint 1.448413e-03

Joint ci ratio: 9.129437e-02	ci left: 1.383413e-03	ci right 1.516515e-03	k: 1840	n:1270000
Cons ci ratio: 1.058501e-01	ci left: 1.021629e-03	ci right 1.136571e-03	k: 1369	n:1270000
KS ci ratio: 7.983410e-03	ci left: 1.589147e-01	ci right 1.601892e-01	k: 202630	n:1270000
UGT2B15   1270000 perm   874 sec   (1453 perm/sec)   p_kst 1.595512e-01   p_cons 1.077953e-03   p_joint 1.448819e-03

Joint ci ratio: 9.109689e-02	ci left: 1.378713e-03	ci right 1.511060e-03	k: 1848	n:1280000
Cons ci ratio: 1.054659e-01	ci left: 1.021254e-03	ci right 1.135711e-03	k: 1379	n:1280000
KS ci ratio: 7.951458e-03	ci left: 1.589410e-01	ci right 1.602106e-01	k: 204256	n:1280000
UGT2B15   1280000 perm   886 sec   (1445 perm/sec)   p_kst 1.595750e-01   p_cons 1.077344e-03   p_joint 1.443750e-03

Joint ci ratio: 8.441141e-02	ci left: 1.598527e-03	ci right 1.740159e-03	k: 2152	n:1290000
Cons ci ratio: 1.051996e-01	ci left: 1.018620e-03	ci right 1.132476e-03	k: 1386	n:1290000
KS ci ratio: 7.919932e-03	ci left: 1.589653e-01	ci right 1.602300e-01	k: 205880	n:1290000
UGT2B15   1290000 perm   898 sec   (1437 perm/sec)   p_kst 1.595969e-01   p_cons 1.074419e-03   p_joint 1.668217e-03

Joint ci ratio: 8.451031e-02	ci left: 1.582465e-03	ci right 1.722847e-03	k: 2147	n:1300000
Cons ci ratio: 1.050107e-01	ci left: 1.014530e-03	ci right 1.127712e-03	k: 1391	n:1300000
KS ci ratio: 7.887941e-03	ci left: 1.590177e-01	ci right 1.602777e-01	k: 207541	n:1300000
UGT2B15   1300000 perm   910 sec   (1429 perm/sec)   p_kst 1.596469e-01   p_cons 1.070000e-03   p_joint 1.651538e-03

Joint ci ratio: 8.516867e-02	ci left: 1.545728e-03	ci right 1.683972e-03	k: 2114	n:1310000
Cons ci ratio: 1.047853e-01	ci left: 1.011245e-03	ci right 1.123804e-03	k: 1397	n:1310000
KS ci ratio: 7.856960e-03	ci left: 1.590479e-01	ci right 1.603032e-01	k: 209174	n:1310000
UGT2B15   1310000 perm   922 sec   (1421 perm/sec)   p_kst 1.596748e-01   p_cons 1.066412e-03   p_joint 1.613740e-03

Joint ci ratio: 8.754357e-02	ci left: 1.450257e-03	ci right 1.583764e-03	k: 2001	n:1320000
Cons ci ratio: 1.044126e-01	ci left: 1.010962e-03	ci right 1.123064e-03	k: 1407	n:1320000
KS ci ratio: 7.826850e-03	ci left: 1.590603e-01	ci right 1.603109e-01	k: 210784	n:1320000
UGT2B15   1320000 perm   934 sec   (1414 perm/sec)   p_kst 1.596848e-01   p_cons 1.065909e-03   p_joint 1.515909e-03

Joint ci ratio: 8.730419e-02	ci left: 1.447442e-03	ci right 1.580307e-03	k: 2012	n:1330000
Cons ci ratio: 1.041173e-01	ci left: 1.009219e-03	ci right 1.120792e-03	k: 1415	n:1330000
KS ci ratio: 7.797892e-03	ci left: 1.590448e-01	ci right 1.602906e-01	k: 212357	n:1330000
UGT2B15   1330000 perm   946 sec   (1405 perm/sec)   p_kst 1.596669e-01   p_cons 1.063910e-03   p_joint 1.512782e-03

Joint ci ratio: 8.363940e-02	ci left: 1.568103e-03	ci right 1.705707e-03	k: 2192	n:1340000
Cons ci ratio: 1.040075e-01	ci left: 1.003868e-03	ci right 1.114725e-03	k: 1418	n:1340000
KS ci ratio: 7.768150e-03	ci left: 1.590674e-01	ci right 1.603086e-01	k: 213981	n:1340000
UGT2B15   1340000 perm   959 sec   (1398 perm/sec)   p_kst 1.596873e-01   p_cons 1.058209e-03   p_joint 1.635821e-03

Joint ci ratio: 8.331707e-02	ci left: 1.568817e-03	ci right 1.705928e-03	k: 2209	n:1350000
Cons ci ratio: 1.037520e-01	ci left: 1.001482e-03	ci right 1.111788e-03	k: 1425	n:1350000
KS ci ratio: 7.739515e-03	ci left: 1.590632e-01	ci right 1.602998e-01	k: 215569	n:1350000
UGT2B15   1350000 perm   971 sec   (1390 perm/sec)   p_kst 1.596807e-01   p_cons 1.055556e-03   p_joint 1.636296e-03

Joint ci ratio: 8.358317e-02	ci left: 1.547202e-03	ci right 1.682876e-03	k: 2195	n:1360000
Cons ci ratio: 1.034623e-01	ci left: 9.998481e-04	ci right 1.109647e-03	k: 1433	n:1360000
KS ci ratio: 7.710836e-03	ci left: 1.590715e-01	ci right 1.603035e-01	k: 217174	n:1360000
UGT2B15   1360000 perm   984 sec   (1383 perm/sec)   p_kst 1.596868e-01   p_cons 1.053676e-03   p_joint 1.613971e-03

Joint ci ratio: 8.341263e-02	ci left: 1.542340e-03	ci right 1.677299e-03	k: 2204	n:1370000
Cons ci ratio: 1.028897e-01	ci left: 1.003927e-03	ci right 1.113528e-03	k: 1449	n:1370000
KS ci ratio: 7.682431e-03	ci left: 1.590811e-01	ci right 1.603087e-01	k: 218781	n:1370000
UGT2B15   1370000 perm   996 sec   (1376 perm/sec)   p_kst 1.596942e-01   p_cons 1.057664e-03   p_joint 1.608759e-03

Joint ci ratio: 8.311164e-02	ci left: 1.542517e-03	ci right 1.676980e-03	k: 2220	n:1380000
Cons ci ratio: 1.026071e-01	ci left: 1.002301e-03	ci right 1.111405e-03	k: 1457	n:1380000
KS ci ratio: 7.655371e-03	ci left: 1.590544e-01	ci right 1.602774e-01	k: 220338	n:1380000
UGT2B15   1380000 perm   1008 sec   (1369 perm/sec)   p_kst 1.596652e-01   p_cons 1.055797e-03   p_joint 1.608696e-03

Joint ci ratio: 9.022680e-02	ci left: 1.294915e-03	ci right 1.417969e-03	k: 1884	n:1390000
Cons ci ratio: 1.021179e-01	ci left: 1.004904e-03	ci right 1.113739e-03	k: 1471	n:1390000
KS ci ratio: 7.628166e-03	ci left: 1.590432e-01	ci right 1.602618e-01	k: 221916	n:1390000
UGT2B15   1390000 perm   1021 sec   (1362 perm/sec)   p_kst 1.596518e-01   p_cons 1.058273e-03   p_joint 1.355396e-03

Joint ci ratio: 8.994102e-02	ci left: 1.294044e-03	ci right 1.416605e-03	k: 1896	n:1400000
Cons ci ratio: 1.017728e-01	ci left: 1.004687e-03	ci right 1.113108e-03	k: 1481	n:1400000
KS ci ratio: 7.601228e-03	ci left: 1.590329e-01	ci right 1.602471e-01	k: 223495	n:1400000
UGT2B15   1400000 perm   1033 sec   (1355 perm/sec)   p_kst 1.596393e-01   p_cons 1.057857e-03   p_joint 1.354286e-03

Joint ci ratio: 8.975215e-02	ci left: 1.290413e-03	ci right 1.412359e-03	k: 1904	n:1410000
Cons ci ratio: 1.013632e-01	ci left: 1.005856e-03	ci right 1.113941e-03	k: 1493	n:1410000
KS ci ratio: 7.573413e-03	ci left: 1.590638e-01	ci right 1.602737e-01	k: 225132	n:1410000
UGT2B15   1410000 perm   1046 sec   (1348 perm/sec)   p_kst 1.596681e-01   p_cons 1.058865e-03   p_joint 1.350355e-03

Joint ci ratio: 8.947084e-02	ci left: 1.289587e-03	ci right 1.411053e-03	k: 1916	n:1420000
Cons ci ratio: 1.009921e-01	ci left: 1.006323e-03	ci right 1.114039e-03	k: 1504	n:1420000
KS ci ratio: 7.546950e-03	ci left: 1.590570e-01	ci right 1.602627e-01	k: 226716	n:1420000
UGT2B15   1420000 perm   1059 sec   (1341 perm/sec)   p_kst 1.596592e-01   p_cons 1.059155e-03   p_joint 1.349296e-03

Joint ci ratio: 8.914590e-02	ci left: 1.290140e-03	ci right 1.411194e-03	k: 1930	n:1430000
Cons ci ratio: 1.008584e-01	ci left: 1.002012e-03	ci right 1.109116e-03	k: 1508	n:1430000
KS ci ratio: 7.521586e-03	ci left: 1.590210e-01	ci right 1.602223e-01	k: 228258	n:1430000
UGT2B15   1430000 perm   1071 sec   (1335 perm/sec)   p_kst 1.596210e-01   p_cons 1.054545e-03   p_joint 1.349650e-03

Joint ci ratio: 8.893901e-02	ci left: 1.287292e-03	ci right 1.407784e-03	k: 1939	n:1440000
Cons ci ratio: 1.004266e-01	ci left: 1.003854e-03	ci right 1.110669e-03	k: 1521	n:1440000
KS ci ratio: 7.497330e-03	ci left: 1.589550e-01	ci right 1.601519e-01	k: 229756	n:1440000
UGT2B15   1440000 perm   1084 sec   (1328 perm/sec)   p_kst 1.595528e-01   p_cons 1.056250e-03   p_joint 1.346528e-03

Joint ci ratio: 8.861981e-02	ci left: 1.287855e-03	ci right 1.407944e-03	k: 1953	n:1450000
Cons ci ratio: 1.001966e-01	ci left: 1.001638e-03	ci right 1.107958e-03	k: 1528	n:1450000
KS ci ratio: 7.473019e-03	ci left: 1.589002e-01	ci right 1.600928e-01	k: 231269	n:1450000
UGT2B15   1450000 perm   1097 sec   (1322 perm/sec)   p_kst 1.594959e-01   p_cons 1.053793e-03   p_joint 1.346897e-03

Joint ci ratio: 9.535610e-02	ci left: 1.101022e-03	ci right 1.211931e-03	k: 1687	n:1460000
Cons ci ratio: 9.990308e-02	ci left: 1.000787e-03	ci right 1.106687e-03	k: 1537	n:1460000
KS ci ratio: 7.447515e-03	ci left: 1.588975e-01	ci right 1.600860e-01	k: 232857	n:1460000
UGT2B15   1460000 perm   1110 sec   (1315 perm/sec)   p_kst 1.594911e-01   p_cons 1.052740e-03   p_joint 1.155479e-03

Outputting figure to mutsig2_images.part000000000186/UGT2B15.3_3234_1460000_0.15949_0.0010527_0.0011555.png
                gene_name: UGT2B15
               theta_stop: 0.100 
                    nperm: 1460000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.0011 
      ci_cons_bounds_left: 0.0010 
     ci_cons_bounds_right: 0.0011 
                  p_joint: 0.0012 
     ci_joint_bounds_left: 0.0011 
    ci_joint_bounds_right: 0.0012 

Current progress: 69 percent done.
UHMK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.594843e-02	ci left: 6.861727e-01	ci right 7.043134e-01	k: 6953	n:10000
KS ci ratio: 2.967861e-02	ci left: 6.260790e-01	ci right 6.450419e-01	k: 6356	n:10000
UHMK1   10000 perm   2 sec   (6323 perm/sec)   p_kst 6.356000e-01   p_cons 6.953000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000186/UHMK1.3_1342_10000_0.6356_0.6953_1.png
                gene_name: UHMK1
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
ULK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.532620e-03	ci left: 9.844741e-01	ci right 9.890359e-01	k: 9869	n:10000
KS ci ratio: 5.497778e-03	ci left: 9.779161e-01	ci right 9.833989e-01	k: 9808	n:10000
ULK4   10000 perm   2 sec   (5361 perm/sec)   p_kst 9.808000e-01   p_cons 9.869000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000186/ULK4.3_3972_10000_0.9808_0.9869_1.png
                gene_name: ULK4
               theta_stop: 0.0055 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
UMODL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.696667e-02	ci left: 2.465785e-01	ci right 2.637644e-01	k: 2551	n:10000
Cons ci ratio: 2.852906e-02	ci left: 6.442810e-01	ci right 6.630294e-01	k: 6537	n:10000
KS ci ratio: 1.108203e-01	ci left: 1.050046e-01	ci right 1.174229e-01	k: 1111	n:10000
UMODL1   10000 perm   2 sec   (5161 perm/sec)   p_kst 1.111000e-01   p_cons 6.537000e-01   p_joint 2.551000e-01

Joint ci ratio: 4.236590e-02	ci left: 2.933553e-01	ci right 3.061030e-01	k: 5994	n:20000
Cons ci ratio: 1.939751e-02	ci left: 6.646901e-01	ci right 6.777601e-01	k: 13425	n:20000
KS ci ratio: 7.850234e-02	ci left: 1.064817e-01	ci right 1.152318e-01	k: 2216	n:20000
UMODL1   20000 perm   4 sec   (4636 perm/sec)   p_kst 1.108000e-01   p_cons 6.712500e-01   p_joint 2.997000e-01

Outputting figure to mutsig2_images.part000000000186/UMODL1.3_4425_20000_0.1108_0.67125_0.2997.png
                gene_name: UMODL1
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 75 percent done.
UBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.559459e-02	ci left: 8.565131e-01	ci right 8.700745e-01	k: 8634	n:10000
KS ci ratio: 6.997954e-03	ci left: 9.656240e-01	ci right 9.724991e-01	k: 9692	n:10000
UBP1   10000 perm   2 sec   (6361 perm/sec)   p_kst 9.692000e-01   p_cons 8.634000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000186/UBP1.2_1687_10000_0.9692_0.8634_1.png
                gene_name: UBP1
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
UBQLN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.691880e-02	ci left: 8.357199e-01	ci right 8.500797e-01	k: 8430	n:10000
Cons ci ratio: 9.960716e-02	ci left: 1.273806e-01	ci right 1.408333e-01	k: 1340	n:10000
KS ci ratio: 2.894603e-02	ci left: 6.376421e-01	ci right 6.564722e-01	k: 6471	n:10000
UBQLN1   10000 perm   2 sec   (6385 perm/sec)   p_kst 6.471000e-01   p_cons 1.340000e-01   p_joint 8.430000e-01

Outputting figure to mutsig2_images.part000000000186/UBQLN1.2_1814_10000_0.6471_0.134_0.843.png
                gene_name: UBQLN1
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 78 percent done.
UBQLN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.026480e-02	ci left: 9.309212e-01	ci right 9.406231e-01	k: 9359	n:10000
Cons ci ratio: 4.298147e-02	ci left: 4.442063e-01	ci right 4.638205e-01	k: 4540	n:10000
KS ci ratio: 2.297566e-02	ci left: 7.356292e-01	ci right 7.528283e-01	k: 7443	n:10000
UBQLN4   10000 perm   2 sec   (6323 perm/sec)   p_kst 7.443000e-01   p_cons 4.540000e-01   p_joint 9.359000e-01

Outputting figure to mutsig2_images.part000000000186/UBQLN4.2_1850_10000_0.7443_0.454_0.9359.png
                gene_name: UBQLN4
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 80 percent done.
UBXN11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.231157e-02	ci left: 4.519911e-01	ci right 4.716311e-01	k: 4618	n:10000
Cons ci ratio: 6.466872e-02	ci left: 2.599312e-01	ci right 2.774037e-01	k: 2686	n:10000
KS ci ratio: 2.119438e-02	ci left: 7.654710e-01	ci right 7.819693e-01	k: 7738	n:10000
UBXN11   10000 perm   2 sec   (6434 perm/sec)   p_kst 7.738000e-01   p_cons 2.686000e-01   p_joint 4.618000e-01

Outputting figure to mutsig2_images.part000000000186/UBXN11.2_1619_10000_0.7738_0.2686_0.4618.png
                gene_name: UBXN11
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 82 percent done.
UBXN7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.742710e-02	ci left: 8.275777e-01	ci right 8.422267e-01	k: 8350	n:10000
Cons ci ratio: 2.837802e-02	ci left: 6.466956e-01	ci right 6.654134e-01	k: 6561	n:10000
KS ci ratio: 3.264030e-02	ci left: 5.807868e-01	ci right 6.001604e-01	k: 5905	n:10000
UBXN7   10000 perm   2 sec   (6626 perm/sec)   p_kst 5.905000e-01   p_cons 6.561000e-01   p_joint 8.350000e-01

Outputting figure to mutsig2_images.part000000000186/UBXN7.2_1514_10000_0.5905_0.6561_0.835.png
                gene_name: UBXN7
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 84 percent done.
UCP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.245959e-02	ci left: 9.024739e-01	ci right 9.138870e-01	k: 9083	n:10000
Cons ci ratio: 3.681323e-02	ci left: 5.214615e-01	ci right 5.411203e-01	k: 5313	n:10000
KS ci ratio: 4.760319e-02	ci left: 3.943616e-01	ci right 4.136943e-01	k: 4040	n:10000
UCP1   10000 perm   1 sec   (6799 perm/sec)   p_kst 4.040000e-01   p_cons 5.313000e-01   p_joint 9.083000e-01

Outputting figure to mutsig2_images.part000000000186/UCP1.2_946_10000_0.404_0.5313_0.9083.png
                gene_name: UCP1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 86 percent done.
UGDH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.840317e-02	ci left: 6.462931e-01	ci right 6.650161e-01	k: 6557	n:10000
KS ci ratio: 2.354312e-02	ci left: 7.261314e-01	ci right 7.435316e-01	k: 7349	n:10000
UGDH   10000 perm   1 sec   (6741 perm/sec)   p_kst 7.349000e-01   p_cons 6.557000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000186/UGDH.2_1529_10000_0.7349_0.6557_1.png
                gene_name: UGDH
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
UGT1A10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.987073e-02	ci left: 3.722635e-01	ci right 3.914054e-01	k: 3818	n:10000
Cons ci ratio: 9.883601e-03	ci left: 9.354766e-01	ci right 9.448650e-01	k: 9403	n:10000
KS ci ratio: 1.248719e-01	ci left: 8.407230e-02	ci right 9.536803e-02	k: 896	n:10000
UGT1A10   10000 perm   2 sec   (6383 perm/sec)   p_kst 8.960000e-02   p_cons 9.403000e-01   p_joint 3.818000e-01

Joint ci ratio: 1.536719e-02	ci left: 7.589597e-01	ci right 7.707632e-01	k: 15298	n:20000
Cons ci ratio: 6.946042e-03	ci left: 9.375935e-01	ci right 9.441775e-01	k: 18819	n:20000
KS ci ratio: 9.010439e-02	ci left: 8.254157e-02	ci right 9.037914e-02	k: 1728	n:20000
UGT1A10   20000 perm   4 sec   (5648 perm/sec)   p_kst 8.640000e-02   p_cons 9.409500e-01   p_joint 7.649000e-01

Outputting figure to mutsig2_images.part000000000186/UGT1A10.2_1613_20000_0.0864_0.94095_0.7649.png
                gene_name: UGT1A10
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.086 
        ci_ks_bounds_left: 0.083 
       ci_ks_bounds_right: 0.090 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 90 percent done.
UGT1A7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.343441e-02	ci left: 7.279497e-01	ci right 7.453122e-01	k: 7367	n:10000
Cons ci ratio: 3.105166e-02	ci left: 6.047779e-01	ci right 6.239554e-01	k: 6144	n:10000
KS ci ratio: 6.135045e-02	ci left: 2.809205e-01	ci right 2.988021e-01	k: 2898	n:10000
UGT1A7   10000 perm   2 sec   (6373 perm/sec)   p_kst 2.898000e-01   p_cons 6.144000e-01   p_joint 7.367000e-01

Outputting figure to mutsig2_images.part000000000186/UGT1A7.2_1613_10000_0.2898_0.6144_0.7367.png
                gene_name: UGT1A7
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 92 percent done.
UGT2B7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.110596e-02	ci left: 4.663694e-01	ci right 4.860444e-01	k: 4762	n:10000
Cons ci ratio: 1.538251e-02	ci left: 8.597792e-01	ci right 8.732065e-01	k: 8666	n:10000
KS ci ratio: 1.019464e-01	ci left: 1.221955e-01	ci right 1.354215e-01	k: 1287	n:10000
UGT2B7   10000 perm   2 sec   (6416 perm/sec)   p_kst 1.287000e-01   p_cons 8.666000e-01   p_joint 4.762000e-01

Joint ci ratio: 5.416147e-02	ci left: 2.018978e-01	ci right 2.131874e-01	k: 4150	n:20000
Cons ci ratio: 1.077248e-02	ci left: 8.640423e-01	ci right 8.734502e-01	k: 17376	n:20000
KS ci ratio: 7.188020e-02	ci left: 1.247774e-01	ci right 1.341306e-01	k: 2588	n:20000
UGT2B7   20000 perm   4 sec   (5678 perm/sec)   p_kst 1.294000e-01   p_cons 8.688000e-01   p_joint 2.075000e-01

Outputting figure to mutsig2_images.part000000000186/UGT2B7.2_1614_20000_0.1294_0.8688_0.2075.png
                gene_name: UGT2B7
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 94 percent done.
UHRF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.450658e-02	ci left: 3.315077e-01	ci right 3.501851e-01	k: 3408	n:10000
KS ci ratio: 6.374371e-02	ci left: 2.655721e-01	ci right 2.831595e-01	k: 2743	n:10000
UHRF1   10000 perm   2 sec   (6208 perm/sec)   p_kst 2.743000e-01   p_cons 3.408000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000186/UHRF1.2_2484_10000_0.2743_0.3408_1.png
                gene_name: UHRF1
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
ULBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.301790e-02	ci left: 7.349217e-01	ci right 7.521362e-01	k: 7436	n:10000
Cons ci ratio: 6.491644e-02	ci left: 2.584471e-01	ci right 2.758888e-01	k: 2671	n:10000
KS ci ratio: 1.972311e-02	ci left: 7.899946e-01	ci right 8.058315e-01	k: 7980	n:10000
ULBP1   10000 perm   1 sec   (6910 perm/sec)   p_kst 7.980000e-01   p_cons 2.671000e-01   p_joint 7.436000e-01

Outputting figure to mutsig2_images.part000000000186/ULBP1.2_751_10000_0.798_0.2671_0.7436.png
                gene_name: ULBP1
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 98 percent done.
UMPS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.096001e-02	ci left: 6.061840e-01	ci right 6.253485e-01	k: 6158	n:10000
KS ci ratio: 4.821140e-02	ci left: 3.882876e-01	ci right 4.075719e-01	k: 3979	n:10000
UMPS   10000 perm   2 sec   (6476 perm/sec)   p_kst 3.979000e-01   p_cons 6.158000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000186/UMPS.2_1467_10000_0.3979_0.6158_1.png
                gene_name: UMPS
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000186
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 186 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1707>
Subject: Job 8004684: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1707>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000187> was used as the working directory.
Started at Sun Nov 11 15:24:45 2012
Results reported at Sun Nov 11 15:35:56 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000187.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000187.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 187  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000187.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    721.79 sec.
    Max Memory :      4710 MB
    Max Swap   :      7215 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
187
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 187
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 187: processing genes 16828 - 16918
Calculating significance of each gene.
Using projection method.
16828	UNC119B	5.504743e-01
16829	UNC13A	4.567997e-02
16830	UNC13B	7.878035e-01
16831	UNC13C	8.139088e-01
16832	UNC13D	1
16833	UNC45A	9.636504e-01
16834	UNC45B	3.934421e-01
16835	UNC50	4.636563e-01
16836	UNC5A	2.853639e-01
16837	UNC5B	9.260642e-01
16838	UNC5C	7.017969e-01
16839	UNC5CL	7.445671e-01
16840	UNC5D	1
16841	UNC93A	1
16842	UNC93B1	1
16843	UNCX	1
16844	UNG	1
16845	UNK	1.521817e-01
16846	UNKL	4.150310e-01
16847	UPB1	1
16848	UPF1	7.212783e-01
16849	UPF2	3.605870e-01
16850	UPF3A	1
16851	UPF3B	8.541661e-02
16852	UPK1A	1
16853	UPK1B	4.448946e-01
16854	UPK2	1
16855	UPK3A	6.216991e-01
16856	UPK3B	1
16857	UPP1	1.825821e-01
16858	UPP2	5.276996e-01
16859	UPRT	6.265610e-01
16860	UQCC	1.097998e-01
16861	UQCR10	1
16862	UQCR11	1
16863	UQCRB	2.793844e-01
16864	UQCRC1	1
16865	UQCRC2	7.873722e-01
16866	UQCRFS1	2.099667e-01
16867	UQCRH	1
16868	UQCRHL	1
16869	UQCRQ	1
16870	URB2	9.897841e-01
16871	URGCP	6.358755e-01
16872	URM1	1
16873	UROC1	9.530733e-01
16874	UROD	6.802519e-01
16875	UROS	6.752881e-01
16876	USE1	5.707470e-01
16877	USF1	1
16878	USF2	5.322592e-01
16879	USH1C	6.168004e-02
16880	USH1G	1
16881	USH2A	2.053036e-01
16882	USHBP1	4.147923e-01
16883	USMG5	1
16884	USO1	1
16885	USP1	8.720271e-01
16886	USP10	8.965462e-01
16887	USP11	6.902446e-01
16888	USP12	1
16889	USP13	7.608143e-01
16890	USP14	1
16891	USP15	4.930806e-01
16892	USP16	8.840550e-01
16893	USP17L2	6.198227e-01
16894	USP18	1
16895	USP19	9.073720e-01
16896	USP2	8.927854e-01
16897	USP20	8.717099e-01
16898	USP21	5.445585e-01
16899	USP22	7.209266e-01
16900	USP24	9.954688e-01
16901	USP25	9.512746e-01
16902	USP26	7.174202e-01
16903	USP28	6.030505e-01
16904	USP29	2.091958e-07
16905	USP3	7.159668e-01
16906	USP30	7.801401e-01
16907	USP31	9.274148e-01
16908	USP32	7.630554e-01
16909	USP33	2.323309e-01
16910	USP34	1
16911	USP35	7.045703e-01
16912	USP36	1
16913	USP37	3.175697e-01
16914	USP38	9.678185e-01
16915	USP39	8.809432e-01
16916	USP4	9.599256e-01
16917	USP40	6.672323e-01
16918	USP42	1
Done

Running MutSig 2:
Scatter job 187: processing genes 16828 - 16918
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
USH2A
Processing conservation and coverage...
62% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.958397e-02	ci left: 2.324462e-01	ci right 2.493050e-01	k: 2408	n:10000
Cons ci ratio: 1.158000e-02	ci left: 9.143035e-01	ci right 9.250505e-01	k: 9198	n:10000
KS ci ratio: 1.093867e-01	ci left: 1.075413e-01	ci right 1.200846e-01	k: 1137	n:10000
USH2A   10000 perm   5 sec   (1818 perm/sec)   p_kst 1.137000e-01   p_cons 9.198000e-01   p_joint 2.408000e-01

Joint ci ratio: 5.060922e-02	ci left: 2.248759e-01	ci right 2.366025e-01	k: 4614	n:20000
Cons ci ratio: 8.130995e-03	ci left: 9.169709e-01	ci right 9.245063e-01	k: 18416	n:20000
KS ci ratio: 7.922764e-02	ci left: 1.047130e-01	ci right 1.134010e-01	k: 2180	n:20000
USH2A   20000 perm   13 sec   (1504 perm/sec)   p_kst 1.090000e-01   p_cons 9.208000e-01   p_joint 2.307000e-01

Outputting figure to mutsig2_images.part000000000187/USH2A.90_15907_20000_0.109_0.9208_0.2307.png
                gene_name: USH2A
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 2 percent done.
UNC13C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.997964e-02	ci left: 7.857354e-01	ci right 8.016931e-01	k: 7938	n:10000
KS ci ratio: 1.107859e-02	ci left: 9.207974e-01	ci right 9.311528e-01	k: 9261	n:10000
UNC13C   10000 perm   3 sec   (3482 perm/sec)   p_kst 9.261000e-01   p_cons 7.938000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000187/UNC13C.21_6769_10000_0.9261_0.7938_1.png
                gene_name: UNC13C
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 4 percent done.
USP34
Processing conservation and coverage...
91% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.172305e-02	ci left: 2.216827e-01	ci right 2.382749e-01	k: 2299	n:10000
Cons ci ratio: 1.509149e-01	ci left: 5.841227e-02	ci right 6.804410e-02	k: 631	n:10000
KS ci ratio: 2.599129e-02	ci left: 6.854671e-01	ci right 7.036194e-01	k: 6946	n:10000
USP34   10000 perm   3 sec   (3357 perm/sec)   p_kst 6.946000e-01   p_cons 6.310000e-02   p_joint 2.299000e-01

Joint ci ratio: 4.720395e-02	ci left: 2.503097e-01	ci right 2.624612e-01	k: 5127	n:20000
Cons ci ratio: 1.085134e-01	ci left: 5.791700e-02	ci right 6.461125e-02	k: 1224	n:20000
KS ci ratio: 1.853307e-02	ci left: 6.845939e-01	ci right 6.974506e-01	k: 13821	n:20000
USP34   20000 perm   7 sec   (3064 perm/sec)   p_kst 6.910500e-01   p_cons 6.120000e-02   p_joint 2.563500e-01

Joint ci ratio: 4.014920e-02	ci left: 2.362682e-01	ci right 2.459820e-01	k: 7233	n:30000
Cons ci ratio: 8.955279e-02	ci left: 5.733867e-02	ci right 6.274692e-02	k: 1800	n:30000
KS ci ratio: 1.520857e-02	ci left: 6.836266e-01	ci right 6.941368e-01	k: 20667	n:30000
USP34   30000 perm   10 sec   (2973 perm/sec)   p_kst 6.889000e-01   p_cons 6.000000e-02   p_joint 2.411000e-01

Outputting figure to mutsig2_images.part000000000187/USP34.20_10961_30000_0.6889_0.06_0.2411.png
                gene_name: USP34
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.060 
      ci_cons_bounds_left: 0.057 
     ci_cons_bounds_right: 0.063 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 7 percent done.
UNC5D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.361654e-02	ci left: 2.127026e-01	ci right 2.290604e-01	k: 2208	n:10000
Cons ci ratio: 1.414688e-01	ci left: 6.623521e-02	ci right 7.641622e-02	k: 712	n:10000
KS ci ratio: 5.421677e-02	ci left: 3.338913e-01	ci right 3.526001e-01	k: 3432	n:10000
UNC5D   10000 perm   2 sec   (4757 perm/sec)   p_kst 3.432000e-01   p_cons 7.120000e-02   p_joint 2.208000e-01

Joint ci ratio: 5.845918e-02	ci left: 1.781568e-01	ci right 1.889354e-01	k: 3670	n:20000
Cons ci ratio: 1.047818e-01	ci left: 6.196321e-02	ci right 6.886379e-02	k: 1307	n:20000
KS ci ratio: 3.803290e-02	ci left: 3.402512e-01	ci right 3.534933e-01	k: 6937	n:20000
UNC5D   20000 perm   5 sec   (4328 perm/sec)   p_kst 3.468500e-01   p_cons 6.535000e-02   p_joint 1.835000e-01

Joint ci ratio: 5.177916e-02	ci left: 1.562307e-01	ci right 1.645685e-01	k: 4811	n:30000
Cons ci ratio: 8.674324e-02	ci left: 6.096215e-02	ci right 6.652270e-02	k: 1911	n:30000
KS ci ratio: 3.099669e-02	ci left: 3.423092e-01	ci right 3.531203e-01	k: 10431	n:30000
UNC5D   30000 perm   7 sec   (4167 perm/sec)   p_kst 3.477000e-01   p_cons 6.370000e-02   p_joint 1.603667e-01

Outputting figure to mutsig2_images.part000000000187/UNC5D.19_2930_30000_0.3477_0.0637_0.16037.png
                gene_name: UNC5D
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.064 
      ci_cons_bounds_left: 0.061 
     ci_cons_bounds_right: 0.067 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.16 

Current progress: 9 percent done.
USP29
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.714711e-02	ci left: 5.169577e-01	ci right 5.366267e-01	k: 5268	n:10000
Cons ci ratio: 6.901795e-02	ci left: 2.354100e-01	ci right 2.523395e-01	k: 2438	n:10000
KS ci ratio: 1.524259e-02	ci left: 8.619232e-01	ci right 8.752613e-01	k: 8687	n:10000
USP29   10000 perm   2 sec   (4329 perm/sec)   p_kst 8.687000e-01   p_cons 2.438000e-01   p_joint 5.268000e-01

Outputting figure to mutsig2_images.part000000000187/USP29.18_2773_10000_0.8687_0.2438_0.5268.png
                gene_name: USP29
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 11 percent done.
UNC13A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.609511e-02	ci left: 5.312726e-01	ci right 5.509035e-01	k: 5411	n:10000
Cons ci ratio: 2.113385e-02	ci left: 7.664836e-01	ci right 7.829561e-01	k: 7748	n:10000
KS ci ratio: 4.916000e-02	ci left: 3.790301e-01	ci right 3.982348e-01	k: 3886	n:10000
UNC13A   10000 perm   2 sec   (4338 perm/sec)   p_kst 3.886000e-01   p_cons 7.748000e-01   p_joint 5.411000e-01

Outputting figure to mutsig2_images.part000000000187/UNC13A.13_5280_10000_0.3886_0.7748_0.5411.png
                gene_name: UNC13A
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 13 percent done.
USP13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.529973e-02	ci left: 4.183742e-01	ci right 4.378677e-01	k: 4281	n:10000
Cons ci ratio: 1.058498e-01	ci left: 1.141806e-01	ci right 1.270413e-01	k: 1205	n:10000
KS ci ratio: 2.200419e-02	ci left: 7.519090e-01	ci right 7.687391e-01	k: 7604	n:10000
USP13   10000 perm   2 sec   (5093 perm/sec)   p_kst 7.604000e-01   p_cons 1.205000e-01   p_joint 4.281000e-01

Joint ci ratio: 3.130933e-02	ci left: 4.324559e-01	ci right 4.462618e-01	k: 8787	n:20000
Cons ci ratio: 6.632081e-02	ci left: 1.437461e-01	ci right 1.536563e-01	k: 2973	n:20000
KS ci ratio: 1.545262e-02	ci left: 7.569427e-01	ci right 7.687808e-01	k: 15258	n:20000
USP13   20000 perm   4 sec   (4633 perm/sec)   p_kst 7.629000e-01   p_cons 1.486500e-01   p_joint 4.393500e-01

Outputting figure to mutsig2_images.part000000000187/USP13.10_2676_20000_0.7629_0.14865_0.43935.png
                gene_name: USP13
               theta_stop: 0.066 
                    nperm: 20000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 16 percent done.
UNC13B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.844356e-02	ci left: 3.859978e-01	ci right 4.052631e-01	k: 3956	n:10000
Cons ci ratio: 9.353182e-02	ci left: 1.423679e-01	ci right 1.564370e-01	k: 1493	n:10000
KS ci ratio: 1.719268e-02	ci left: 8.313427e-01	ci right 8.458595e-01	k: 8387	n:10000
UNC13B   10000 perm   2 sec   (4969 perm/sec)   p_kst 8.387000e-01   p_cons 1.493000e-01   p_joint 3.956000e-01

Outputting figure to mutsig2_images.part000000000187/UNC13B.7_4932_10000_0.8387_0.1493_0.3956.png
                gene_name: UNC13B
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 18 percent done.
UNC5C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.070444e-02	ci left: 4.712639e-01	ci right 4.909471e-01	k: 4811	n:10000
Cons ci ratio: 4.566232e-02	ci left: 4.144867e-01	ci right 4.339575e-01	k: 4242	n:10000
KS ci ratio: 7.435137e-02	ci left: 2.093488e-01	ci right 2.256161e-01	k: 2174	n:10000
UNC5C   10000 perm   2 sec   (4833 perm/sec)   p_kst 2.174000e-01   p_cons 4.242000e-01   p_joint 4.811000e-01

Outputting figure to mutsig2_images.part000000000187/UNC5C.7_2860_10000_0.2174_0.4242_0.4811.png
                gene_name: UNC5C
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 20 percent done.
USH1C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.681654e-02	ci left: 3.132420e-01	ci right 3.316615e-01	k: 3224	n:10000
Cons ci ratio: 9.788599e-02	ci left: 1.313941e-01	ci right 1.450174e-01	k: 1381	n:10000
KS ci ratio: 5.305884e-02	ci left: 3.436272e-01	ci right 3.624585e-01	k: 3530	n:10000
USH1C   10000 perm   2 sec   (5479 perm/sec)   p_kst 3.530000e-01   p_cons 1.381000e-01   p_joint 3.224000e-01

Outputting figure to mutsig2_images.part000000000187/USH1C.7_2886_10000_0.353_0.1381_0.3224.png
                gene_name: USH1C
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 22 percent done.
USP24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.293134e-02	ci left: 3.447203e-01	ci right 3.635648e-01	k: 3541	n:10000
Cons ci ratio: 4.268795e-02	ci left: 4.475994e-01	ci right 4.672254e-01	k: 4574	n:10000
KS ci ratio: 6.540060e-02	ci left: 2.555781e-01	ci right 2.729595e-01	k: 2642	n:10000
USP24   10000 perm   3 sec   (3709 perm/sec)   p_kst 2.642000e-01   p_cons 4.574000e-01   p_joint 3.541000e-01

Outputting figure to mutsig2_images.part000000000187/USP24.7_8135_10000_0.2642_0.4574_0.3541.png
                gene_name: USP24
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 24 percent done.
UPF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.023176e-02	ci left: 3.688810e-01	ci right 3.879899e-01	k: 3784	n:10000
Cons ci ratio: 6.204299e-02	ci left: 2.763642e-01	ci right 2.941611e-01	k: 2852	n:10000
KS ci ratio: 7.519138e-02	ci left: 2.056014e-01	ci right 2.217657e-01	k: 2136	n:10000
UPF2   10000 perm   2 sec   (4226 perm/sec)   p_kst 2.136000e-01   p_cons 2.852000e-01   p_joint 3.784000e-01

Outputting figure to mutsig2_images.part000000000187/UPF2.6_3903_10000_0.2136_0.2852_0.3784.png
                gene_name: UPF2
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 27 percent done.
UPF3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.375610e-01	ci left: 6.991195e-02	ci right 8.033717e-02	k: 750	n:10000
Cons ci ratio: 2.148972e-01	ci left: 2.873209e-02	ci right 3.574387e-02	k: 321	n:10000
KS ci ratio: 7.788726e-02	ci left: 1.941685e-01	ci right 2.100054e-01	k: 2020	n:10000
UPF3B   10000 perm   2 sec   (5731 perm/sec)   p_kst 2.020000e-01   p_cons 3.210000e-02   p_joint 7.500000e-02

Joint ci ratio: 1.018547e-01	ci left: 6.542758e-02	ci right 7.249836e-02	k: 1378	n:20000
Cons ci ratio: 1.618303e-01	ci left: 2.618962e-02	ci right 3.084880e-02	k: 569	n:20000
KS ci ratio: 5.478665e-02	ci left: 1.981862e-01	ci right 2.094001e-01	k: 4075	n:20000
UPF3B   20000 perm   4 sec   (5140 perm/sec)   p_kst 2.037500e-01   p_cons 2.845000e-02   p_joint 6.890000e-02

Joint ci ratio: 9.330341e-02	ci left: 5.296827e-02	ci right 5.818489e-02	k: 1666	n:30000
Cons ci ratio: 1.333438e-01	ci left: 2.613009e-02	ci right 2.989539e-02	k: 839	n:30000
KS ci ratio: 4.446400e-02	ci left: 2.011710e-01	ci right 2.103527e-01	k: 6172	n:30000
UPF3B   30000 perm   6 sec   (4927 perm/sec)   p_kst 2.057333e-01   p_cons 2.796667e-02   p_joint 5.553333e-02

Joint ci ratio: 7.759539e-02	ci left: 5.764309e-02	ci right 6.232104e-02	k: 2398	n:40000
Cons ci ratio: 1.160673e-01	ci left: 2.611359e-02	ci right 2.935546e-02	k: 1108	n:40000
KS ci ratio: 3.819081e-02	ci left: 2.044781e-01	ci right 2.124643e-01	k: 8338	n:40000
UPF3B   40000 perm   8 sec   (4771 perm/sec)   p_kst 2.084500e-01   p_cons 2.770000e-02   p_joint 5.995000e-02

Joint ci ratio: 7.192185e-02	ci left: 5.405949e-02	ci right 5.811225e-02	k: 2803	n:50000
Cons ci ratio: 9.971753e-02	ci left: 2.848307e-02	ci right 3.149183e-02	k: 1498	n:50000
KS ci ratio: 3.427685e-02	ci left: 2.037738e-01	ci right 2.109002e-01	k: 10366	n:50000
UPF3B   50000 perm   11 sec   (4658 perm/sec)   p_kst 2.073200e-01   p_cons 2.996000e-02   p_joint 5.606000e-02

Outputting figure to mutsig2_images.part000000000187/UPF3B.6_1496_50000_0.20732_0.02996_0.05606.png
                gene_name: UPF3B
               theta_stop: 0.100 
                    nperm: 50000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.030 
      ci_cons_bounds_left: 0.028 
     ci_cons_bounds_right: 0.031 
                  p_joint: 0.056 
     ci_joint_bounds_left: 0.054 
    ci_joint_bounds_right: 0.058 

Current progress: 29 percent done.
USP25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.307401e-02	ci left: 5.743665e-01	ci right 5.937845e-01	k: 5841	n:10000
Cons ci ratio: 9.541650e-02	ci left: 1.374671e-01	ci right 1.513407e-01	k: 1443	n:10000
KS ci ratio: 2.002843e-02	ci left: 7.849243e-01	ci right 8.009047e-01	k: 7930	n:10000
USP25   10000 perm   2 sec   (5156 perm/sec)   p_kst 7.930000e-01   p_cons 1.443000e-01   p_joint 5.841000e-01

Outputting figure to mutsig2_images.part000000000187/USP25.6_3264_10000_0.793_0.1443_0.5841.png
                gene_name: USP25
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 31 percent done.
USP33
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.445662e-02	ci left: 7.108847e-01	ci right 7.285871e-01	k: 7198	n:10000
Cons ci ratio: 4.502334e-02	ci left: 4.213649e-01	ci right 4.408752e-01	k: 4311	n:10000
KS ci ratio: 1.656605e-02	ci left: 8.413215e-01	ci right 8.554749e-01	k: 8485	n:10000
USP33   10000 perm   2 sec   (5204 perm/sec)   p_kst 8.485000e-01   p_cons 4.311000e-01   p_joint 7.198000e-01

Outputting figure to mutsig2_images.part000000000187/USP33.6_2937_10000_0.8485_0.4311_0.7198.png
                gene_name: USP33
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 33 percent done.
UNC5A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.994303e-02	ci left: 7.863438e-01	ci right 8.022844e-01	k: 7944	n:10000
Cons ci ratio: 2.691388e-02	ci left: 6.703529e-01	ci right 6.887424e-01	k: 6796	n:10000
KS ci ratio: 2.775808e-02	ci left: 6.566587e-01	ci right 6.752445e-01	k: 6660	n:10000
UNC5A   10000 perm   2 sec   (5437 perm/sec)   p_kst 6.660000e-01   p_cons 6.796000e-01   p_joint 7.944000e-01

Outputting figure to mutsig2_images.part000000000187/UNC5A.5_2589_10000_0.666_0.6796_0.7944.png
                gene_name: UNC5A
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 36 percent done.
UNK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.495916e-02	ci left: 4.220628e-01	ci right 4.415769e-01	k: 4318	n:10000
Cons ci ratio: 1.820536e-02	ci left: 8.149692e-01	ci right 8.300424e-01	k: 8226	n:10000
KS ci ratio: 6.160471e-02	ci left: 2.792365e-01	ci right 2.970871e-01	k: 2881	n:10000
UNK   10000 perm   2 sec   (5410 perm/sec)   p_kst 2.881000e-01   p_cons 8.226000e-01   p_joint 4.318000e-01

Outputting figure to mutsig2_images.part000000000187/UNK.5_2729_10000_0.2881_0.8226_0.4318.png
                gene_name: UNK
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 38 percent done.
URB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.844114e-02	ci left: 4.998504e-01	ci right 5.195439e-01	k: 5097	n:10000
Cons ci ratio: 4.485854e-02	ci left: 4.231596e-01	ci right 4.426795e-01	k: 4329	n:10000
KS ci ratio: 4.348773e-02	ci left: 4.384192e-01	ci right 4.580110e-01	k: 4482	n:10000
URB2   10000 perm   2 sec   (4626 perm/sec)   p_kst 4.482000e-01   p_cons 4.329000e-01   p_joint 5.097000e-01

Outputting figure to mutsig2_images.part000000000187/URB2.5_4611_10000_0.4482_0.4329_0.5097.png
                gene_name: URB2
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 40 percent done.
USP11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.184154e-01	ci left: 6.884481e-03	ci right 1.061018e-02	k: 86	n:10000
Cons ci ratio: 6.521239e-01	ci left: 2.439052e-03	ci right 4.864323e-03	k: 35	n:10000
KS ci ratio: 1.516850e-01	ci left: 5.783363e-02	ci right 6.742310e-02	k: 625	n:10000
USP11   10000 perm   2 sec   (5266 perm/sec)   p_kst 6.250000e-02   p_cons 3.500000e-03   p_joint 8.600000e-03

Joint ci ratio: 3.020622e-01	ci left: 7.089521e-03	ci right 9.656492e-03	k: 166	n:20000
Cons ci ratio: 4.293715e-01	ci left: 3.262140e-03	ci right 5.086662e-03	k: 82	n:20000
KS ci ratio: 1.054737e-01	ci left: 6.118290e-02	ci right 6.804434e-02	k: 1291	n:20000
USP11   20000 perm   4 sec   (4789 perm/sec)   p_kst 6.455000e-02   p_cons 4.100000e-03   p_joint 8.300000e-03

Joint ci ratio: 3.353689e-01	ci left: 3.774267e-03	ci right 5.324092e-03	k: 135	n:30000
Cons ci ratio: 3.293414e-01	ci left: 3.927077e-03	ci right 5.504534e-03	k: 140	n:30000
KS ci ratio: 8.713328e-02	ci left: 6.043968e-02	ci right 6.597862e-02	k: 1895	n:30000
USP11   30000 perm   7 sec   (4584 perm/sec)   p_kst 6.316667e-02   p_cons 4.666667e-03   p_joint 4.500000e-03

Joint ci ratio: 1.784089e-01	ci left: 1.086039e-02	ci right 1.301133e-02	k: 476	n:40000
Cons ci ratio: 2.822184e-01	ci left: 4.123096e-03	ci right 5.500309e-03	k: 191	n:40000
KS ci ratio: 7.573209e-02	ci left: 6.039272e-02	ci right 6.517099e-02	k: 2510	n:40000
USP11   40000 perm   9 sec   (4451 perm/sec)   p_kst 6.275000e-02   p_cons 4.775000e-03   p_joint 1.190000e-02

Joint ci ratio: 1.780601e-01	ci left: 8.744768e-03	ci right 1.047288e-02	k: 479	n:50000
Cons ci ratio: 2.493120e-01	ci left: 4.306830e-03	ci right 5.551719e-03	k: 245	n:50000
KS ci ratio: 6.740251e-02	ci left: 6.122042e-02	ci right 6.551045e-02	k: 3167	n:50000
USP11   50000 perm   12 sec   (4346 perm/sec)   p_kst 6.334000e-02   p_cons 4.900000e-03   p_joint 9.580000e-03

Joint ci ratio: 1.752827e-01	ci left: 7.541761e-03	ci right 9.006400e-03	k: 495	n:60000
Cons ci ratio: 2.304313e-01	ci left: 4.246993e-03	ci right 5.368398e-03	k: 287	n:60000
KS ci ratio: 6.114102e-02	ci left: 6.215296e-02	ci right 6.608933e-02	k: 3846	n:60000
USP11   60000 perm   14 sec   (4260 perm/sec)   p_kst 6.410000e-02   p_cons 4.783333e-03   p_joint 8.250000e-03

Joint ci ratio: 2.179485e-01	ci left: 4.098699e-03	ci right 5.114466e-03	k: 321	n:70000
Cons ci ratio: 2.247086e-01	ci left: 3.842257e-03	ci right 4.828097e-03	k: 302	n:70000
KS ci ratio: 5.667427e-02	ci left: 6.215555e-02	ci right 6.579499e-02	k: 4477	n:70000
USP11   70000 perm   17 sec   (4176 perm/sec)   p_kst 6.395714e-02   p_cons 4.314286e-03   p_joint 4.585714e-03

Joint ci ratio: 2.309734e-01	ci left: 3.173258e-03	ci right 4.013376e-03	k: 286	n:80000
Cons ci ratio: 2.075886e-01	ci left: 3.976864e-03	ci right 4.909636e-03	k: 354	n:80000
KS ci ratio: 5.291855e-02	ci left: 6.248640e-02	ci right 6.589529e-02	k: 5134	n:80000
USP11   80000 perm   19 sec   (4104 perm/sec)   p_kst 6.417500e-02   p_cons 4.425000e-03   p_joint 3.575000e-03

Joint ci ratio: 1.428281e-01	ci left: 7.706889e-03	ci right 8.902906e-03	k: 746	n:90000
Cons ci ratio: 1.950736e-01	ci left: 4.030917e-03	ci right 4.912602e-03	k: 401	n:90000
KS ci ratio: 4.984545e-02	ci left: 6.269501e-02	ci right 6.591092e-02	k: 5786	n:90000
USP11   90000 perm   22 sec   (4033 perm/sec)   p_kst 6.428889e-02   p_cons 4.455556e-03   p_joint 8.288889e-03

Joint ci ratio: 1.532538e-01	ci left: 6.001670e-03	ci right 7.007276e-03	k: 649	n:100000
Cons ci ratio: 1.829495e-01	ci left: 4.151846e-03	ci right 4.997285e-03	k: 456	n:100000
KS ci ratio: 4.727186e-02	ci left: 6.281705e-02	ci right 6.586828e-02	k: 6433	n:100000
USP11   100000 perm   25 sec   (3967 perm/sec)   p_kst 6.433000e-02   p_cons 4.560000e-03   p_joint 6.490000e-03

Joint ci ratio: 1.465349e-01	ci left: 5.989813e-03	ci right 6.945579e-03	k: 710	n:110000
Cons ci ratio: 1.728367e-01	ci left: 4.252174e-03	ci right 5.065191e-03	k: 511	n:110000
KS ci ratio: 4.510058e-02	ci left: 6.281245e-02	ci right 6.571966e-02	k: 7068	n:110000
USP11   110000 perm   28 sec   (3904 perm/sec)   p_kst 6.425455e-02   p_cons 4.645455e-03   p_joint 6.454545e-03

Joint ci ratio: 1.412748e-01	ci left: 5.924448e-03	ci right 6.832988e-03	k: 764	n:120000
Cons ci ratio: 1.661593e-01	ci left: 4.232979e-03	ci right 5.007927e-03	k: 553	n:120000
KS ci ratio: 4.312270e-02	ci left: 6.303405e-02	ci right 6.582038e-02	k: 7730	n:120000
USP11   120000 perm   31 sec   (3839 perm/sec)   p_kst 6.441667e-02   p_cons 4.608333e-03   p_joint 6.366667e-03

Joint ci ratio: 1.348147e-01	ci left: 6.025747e-03	ci right 6.904178e-03	k: 839	n:130000
Cons ci ratio: 1.592635e-01	ci left: 4.268950e-03	ci right 5.014949e-03	k: 602	n:130000
KS ci ratio: 4.138675e-02	ci left: 6.321629e-02	ci right 6.589548e-02	k: 8391	n:130000
USP11   130000 perm   34 sec   (3776 perm/sec)   p_kst 6.454615e-02   p_cons 4.630769e-03   p_joint 6.453846e-03

Joint ci ratio: 1.301001e-01	ci left: 6.023520e-03	ci right 6.868546e-03	k: 901	n:140000
Cons ci ratio: 1.536348e-01	ci left: 4.272873e-03	ci right 4.990738e-03	k: 647	n:140000
KS ci ratio: 3.987783e-02	ci left: 6.327534e-02	ci right 6.585701e-02	k: 9038	n:140000
USP11   140000 perm   38 sec   (3717 perm/sec)   p_kst 6.455714e-02   p_cons 4.621429e-03   p_joint 6.435714e-03

Joint ci ratio: 1.082068e-01	ci left: 8.203779e-03	ci right 9.148693e-03	k: 1300	n:150000
Cons ci ratio: 1.474983e-01	ci left: 4.340882e-03	ci right 5.038476e-03	k: 702	n:150000
KS ci ratio: 3.914869e-02	ci left: 6.142548e-02	ci right 6.388479e-02	k: 9397	n:150000
USP11   150000 perm   41 sec   (3662 perm/sec)   p_kst 6.264667e-02   p_cons 4.680000e-03   p_joint 8.666667e-03

Joint ci ratio: 1.041567e-01	ci left: 8.317724e-03	ci right 9.237709e-03	k: 1403	n:160000
Cons ci ratio: 1.366244e-01	ci left: 4.768912e-03	ci right 5.474204e-03	k: 818	n:160000
KS ci ratio: 3.793491e-02	ci left: 6.137448e-02	ci right 6.375390e-02	k: 10009	n:160000
USP11   160000 perm   44 sec   (3611 perm/sec)   p_kst 6.255625e-02   p_cons 5.112500e-03   p_joint 8.768750e-03

Joint ci ratio: 1.063038e-01	ci left: 7.513265e-03	ci right 8.362469e-03	k: 1348	n:170000
Cons ci ratio: 1.330988e-01	ci left: 4.738474e-03	ci right 5.419749e-03	k: 862	n:170000
KS ci ratio: 3.529771e-02	ci left: 6.644601e-02	ci right 6.883935e-02	k: 11498	n:170000
USP11   170000 perm   48 sec   (3563 perm/sec)   p_kst 6.763529e-02   p_cons 5.070588e-03   p_joint 7.929412e-03

Joint ci ratio: 1.064468e-01	ci left: 7.079553e-03	ci right 7.880876e-03	k: 1345	n:180000
Cons ci ratio: 1.295460e-01	ci left: 4.733131e-03	ci right 5.394075e-03	k: 910	n:180000
KS ci ratio: 3.430988e-02	ci left: 6.645541e-02	ci right 6.878077e-02	k: 12170	n:180000
USP11   180000 perm   51 sec   (3513 perm/sec)   p_kst 6.761111e-02   p_cons 5.055556e-03   p_joint 7.472222e-03

Joint ci ratio: 1.095859e-01	ci left: 6.322735e-03	ci right 7.060859e-03	k: 1270	n:190000
Cons ci ratio: 1.260652e-01	ci left: 4.743860e-03	ci right 5.387173e-03	k: 961	n:190000
KS ci ratio: 3.335605e-02	ci left: 6.663177e-02	ci right 6.889723e-02	k: 12874	n:190000
USP11   190000 perm   55 sec   (3465 perm/sec)   p_kst 6.775789e-02   p_cons 5.057895e-03   p_joint 6.684211e-03

Joint ci ratio: 1.070488e-01	ci left: 6.303331e-03	ci right 7.021080e-03	k: 1331	n:200000
Cons ci ratio: 1.225471e-01	ci left: 4.777966e-03	ci right 5.406510e-03	k: 1017	n:200000
KS ci ratio: 3.253159e-02	ci left: 6.658288e-02	ci right 6.878967e-02	k: 13536	n:200000
USP11   200000 perm   59 sec   (3416 perm/sec)   p_kst 6.768000e-02   p_cons 5.085000e-03   p_joint 6.655000e-03

Joint ci ratio: 1.065439e-01	ci left: 6.063384e-03	ci right 6.750348e-03	k: 1344	n:210000
Cons ci ratio: 1.191408e-01	ci left: 4.822911e-03	ci right 5.438490e-03	k: 1076	n:210000
KS ci ratio: 3.178940e-02	ci left: 6.644474e-02	ci right 6.859579e-02	k: 14178	n:210000
USP11   210000 perm   62 sec   (3370 perm/sec)   p_kst 6.751429e-02   p_cons 5.123810e-03   p_joint 6.400000e-03

Joint ci ratio: 1.330214e-01	ci left: 3.670201e-03	ci right 4.197547e-03	k: 864	n:220000
Cons ci ratio: 1.164683e-01	ci left: 4.824263e-03	ci right 5.425253e-03	k: 1126	n:220000
KS ci ratio: 3.226826e-02	ci left: 6.184838e-02	ci right 6.388133e-02	k: 13829	n:220000
USP11   220000 perm   66 sec   (3326 perm/sec)   p_kst 6.285909e-02   p_cons 5.118182e-03   p_joint 3.927273e-03

Joint ci ratio: 1.328787e-01	ci left: 3.519015e-03	ci right 4.024052e-03	k: 866	n:230000
Cons ci ratio: 1.142611e-01	ci left: 4.800293e-03	ci right 5.386199e-03	k: 1170	n:230000
KS ci ratio: 3.153878e-02	ci left: 6.194566e-02	ci right 6.393494e-02	k: 14475	n:230000
USP11   230000 perm   70 sec   (3283 perm/sec)   p_kst 6.293478e-02   p_cons 5.086957e-03   p_joint 3.765217e-03

Joint ci ratio: 1.325063e-01	ci left: 3.392516e-03	ci right 3.877926e-03	k: 871	n:240000
Cons ci ratio: 1.119896e-01	ci left: 4.794621e-03	ci right 5.367432e-03	k: 1218	n:240000
KS ci ratio: 3.089044e-02	ci left: 6.190706e-02	ci right 6.385351e-02	k: 15090	n:240000
USP11   240000 perm   74 sec   (3240 perm/sec)   p_kst 6.287500e-02   p_cons 5.075000e-03   p_joint 3.629167e-03

Joint ci ratio: 1.295669e-01	ci left: 3.411573e-03	ci right 3.888048e-03	k: 911	n:250000
Cons ci ratio: 1.094583e-01	ci left: 4.824526e-03	ci right 5.387041e-03	k: 1275	n:250000
KS ci ratio: 3.029285e-02	ci left: 6.182428e-02	ci right 6.372987e-02	k: 15693	n:250000
USP11   250000 perm   78 sec   (3199 perm/sec)   p_kst 6.277200e-02   p_cons 5.100000e-03   p_joint 3.644000e-03

Joint ci ratio: 1.046342e-01	ci left: 5.088189e-03	ci right 5.653692e-03	k: 1395	n:260000
Cons ci ratio: 1.076200e-01	ci left: 4.803601e-03	ci right 5.353674e-03	k: 1319	n:260000
KS ci ratio: 2.970630e-02	ci left: 6.183606e-02	ci right 6.370447e-02	k: 16319	n:260000
USP11   260000 perm   82 sec   (3160 perm/sec)   p_kst 6.276538e-02   p_cons 5.073077e-03   p_joint 5.365385e-03

Joint ci ratio: 1.043072e-01	ci left: 4.932179e-03	ci right 5.478525e-03	k: 1404	n:270000
Cons ci ratio: 1.055606e-01	ci left: 4.813149e-03	ci right 5.353114e-03	k: 1371	n:270000
KS ci ratio: 2.916173e-02	ci left: 6.181051e-02	ci right 6.364333e-02	k: 16935	n:270000
USP11   270000 perm   86 sec   (3124 perm/sec)   p_kst 6.272222e-02   p_cons 5.077778e-03   p_joint 5.200000e-03

Joint ci ratio: 1.025706e-01	ci left: 4.923022e-03	ci right 5.458727e-03	k: 1452	n:280000
Cons ci ratio: 1.034692e-01	ci left: 4.836026e-03	ci right 5.367154e-03	k: 1427	n:280000
KS ci ratio: 2.863126e-02	ci left: 6.184738e-02	ci right 6.364739e-02	k: 17568	n:280000
USP11   280000 perm   91 sec   (3089 perm/sec)   p_kst 6.274286e-02   p_cons 5.096429e-03   p_joint 5.185714e-03

Joint ci ratio: 9.241843e-02	ci left: 5.880469e-03	ci right 6.453605e-03	k: 1787	n:290000
Cons ci ratio: 1.017734e-01	ci left: 4.830535e-03	ci right 5.351845e-03	k: 1475	n:290000
KS ci ratio: 2.810484e-02	ci left: 6.198134e-02	ci right 6.375155e-02	k: 18230	n:290000
USP11   290000 perm   95 sec   (3054 perm/sec)   p_kst 6.286207e-02   p_cons 5.086207e-03   p_joint 6.162069e-03

Joint ci ratio: 9.635533e-02	ci left: 5.222202e-03	ci right 5.754086e-03	k: 1645	n:300000
Cons ci ratio: 9.973166e-02	ci left: 4.867731e-03	ci right 5.381900e-03	k: 1536	n:300000
KS ci ratio: 2.765175e-02	ci left: 6.191456e-02	ci right 6.365390e-02	k: 18834	n:300000
USP11   300000 perm   99 sec   (3020 perm/sec)   p_kst 6.278000e-02   p_cons 5.120000e-03   p_joint 5.483333e-03

Outputting figure to mutsig2_images.part000000000187/USP11.5_2976_300000_0.06278_0.00512_0.0054833.png
                gene_name: USP11
               theta_stop: 0.100 
                    nperm: 300000 
                     p_ks: 0.063 
        ci_ks_bounds_left: 0.062 
       ci_ks_bounds_right: 0.064 
                   p_cons: 0.0051 
      ci_cons_bounds_left: 0.0049 
     ci_cons_bounds_right: 0.0054 
                  p_joint: 0.0055 
     ci_joint_bounds_left: 0.0052 
    ci_joint_bounds_right: 0.0058 

Current progress: 42 percent done.
USP32
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.182125e-02	ci left: 4.577814e-01	ci right 4.774375e-01	k: 4676	n:10000
Cons ci ratio: 4.362865e-02	ci left: 4.368230e-01	ci right 4.564081e-01	k: 4466	n:10000
KS ci ratio: 5.840080e-02	ci left: 3.014375e-01	ci right 3.196729e-01	k: 3105	n:10000
USP32   10000 perm   2 sec   (4772 perm/sec)   p_kst 3.105000e-01   p_cons 4.466000e-01   p_joint 4.676000e-01

Outputting figure to mutsig2_images.part000000000187/USP32.5_4951_10000_0.3105_0.4466_0.4676.png
                gene_name: USP32
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 44 percent done.
USP37
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.781042e-01	ci left: 4.207265e-02	ci right 5.039427e-02	k: 461	n:10000
Cons ci ratio: 5.369981e-01	ci left: 3.885975e-03	ci right 6.813584e-03	k: 52	n:10000
KS ci ratio: 8.824489e-02	ci left: 1.574787e-01	ci right 1.721171e-01	k: 1647	n:10000
USP37   10000 perm   2 sec   (5176 perm/sec)   p_kst 1.647000e-01   p_cons 5.200000e-03   p_joint 4.610000e-02

Joint ci ratio: 1.911204e-01	ci left: 1.862872e-02	ci right 2.261236e-02	k: 411	n:20000
Cons ci ratio: 3.991121e-01	ci left: 3.844683e-03	ci right 5.803559e-03	k: 95	n:20000
KS ci ratio: 6.278765e-02	ci left: 1.579546e-01	ci right 1.682436e-01	k: 3261	n:20000
USP37   20000 perm   4 sec   (4685 perm/sec)   p_kst 1.630500e-01   p_cons 4.750000e-03   p_joint 2.055000e-02

Joint ci ratio: 1.842295e-01	ci left: 1.349588e-02	ci right 1.626590e-02	k: 445	n:30000
Cons ci ratio: 3.192602e-01	ci left: 4.202752e-03	ci right 5.828718e-03	k: 149	n:30000
KS ci ratio: 5.132885e-02	ci left: 1.585725e-01	ci right 1.669595e-01	k: 4882	n:30000
USP37   30000 perm   7 sec   (4495 perm/sec)   p_kst 1.627333e-01   p_cons 4.966667e-03   p_joint 1.483333e-02

Joint ci ratio: 1.678608e-01	ci left: 1.232011e-02	ci right 1.460133e-02	k: 537	n:40000
Cons ci ratio: 2.829597e-01	ci left: 4.099861e-03	ci right 5.473552e-03	k: 190	n:40000
KS ci ratio: 4.426018e-02	ci left: 1.603090e-01	ci right 1.675898e-01	k: 6557	n:40000
USP37   40000 perm   9 sec   (4376 perm/sec)   p_kst 1.639250e-01   p_cons 4.750000e-03   p_joint 1.342500e-02

Joint ci ratio: 1.829326e-01	ci left: 8.267170e-03	ci right 9.950565e-03	k: 454	n:50000
Cons ci ratio: 2.482997e-01	ci left: 4.344346e-03	ci right 5.594193e-03	k: 247	n:50000
KS ci ratio: 3.906577e-02	ci left: 1.643355e-01	ci right 1.709032e-01	k: 8380	n:50000
USP37   50000 perm   12 sec   (4280 perm/sec)   p_kst 1.676000e-01   p_cons 4.940000e-03   p_joint 9.080000e-03

Joint ci ratio: 1.567420e-01	ci left: 9.507549e-03	ci right 1.114034e-02	k: 618	n:60000
Cons ci ratio: 2.320561e-01	ci left: 4.184173e-03	ci right 5.297898e-03	k: 283	n:60000
KS ci ratio: 3.578436e-02	ci left: 1.636760e-01	ci right 1.696563e-01	k: 9999	n:60000
USP37   60000 perm   14 sec   (4195 perm/sec)   p_kst 1.666500e-01   p_cons 4.716667e-03   p_joint 1.030000e-02

Joint ci ratio: 1.077484e-01	ci left: 1.755635e-02	ci right 1.956956e-02	k: 1298	n:70000
Cons ci ratio: 2.152781e-01	ci left: 4.206809e-03	ci right 5.234909e-03	k: 329	n:70000
KS ci ratio: 3.305796e-02	ci left: 1.644991e-01	ci right 1.700428e-01	k: 11708	n:70000
USP37   70000 perm   17 sec   (4120 perm/sec)   p_kst 1.672571e-01   p_cons 4.700000e-03   p_joint 1.854286e-02

Joint ci ratio: 1.072896e-01	ci left: 1.553122e-02	ci right 1.730410e-02	k: 1312	n:80000
Cons ci ratio: 1.992992e-01	ci left: 4.332844e-03	ci right 5.303603e-03	k: 384	n:80000
KS ci ratio: 3.092945e-02	ci left: 1.646201e-01	ci right 1.698041e-01	k: 13376	n:80000
USP37   80000 perm   20 sec   (4048 perm/sec)   p_kst 1.672000e-01   p_cons 4.800000e-03   p_joint 1.640000e-02

Joint ci ratio: 1.101905e-01	ci left: 1.310202e-02	ci right 1.464066e-02	k: 1247	n:90000
Cons ci ratio: 1.872776e-01	ci left: 4.390694e-03	ci right 5.308334e-03	k: 435	n:90000
KS ci ratio: 2.915026e-02	ci left: 1.648667e-01	ci right 1.697547e-01	k: 15057	n:90000
USP37   90000 perm   23 sec   (3981 perm/sec)   p_kst 1.673000e-01   p_cons 4.833333e-03   p_joint 1.385556e-02

Joint ci ratio: 9.171529e-02	ci left: 1.711655e-02	ci right 1.877157e-02	k: 1793	n:100000
Cons ci ratio: 1.768337e-01	ci left: 4.457500e-03	ci right 5.331597e-03	k: 488	n:100000
KS ci ratio: 2.765746e-02	ci left: 1.649615e-01	ci right 1.695978e-01	k: 16727	n:100000
USP37   100000 perm   26 sec   (3918 perm/sec)   p_kst 1.672700e-01   p_cons 4.880000e-03   p_joint 1.793000e-02

Joint ci ratio: 8.373012e-02	ci left: 1.871772e-02	ci right 2.036230e-02	k: 2148	n:110000
Cons ci ratio: 1.670357e-01	ci left: 4.565591e-03	ci right 5.406289e-03	k: 547	n:110000
KS ci ratio: 2.637707e-02	ci left: 1.649991e-01	ci right 1.694185e-01	k: 18392	n:110000
USP37   110000 perm   28 sec   (3860 perm/sec)   p_kst 1.672000e-01   p_cons 4.972727e-03   p_joint 1.952727e-02

Joint ci ratio: 7.416617e-02	ci left: 2.190557e-02	ci right 2.360093e-02	k: 2729	n:120000
Cons ci ratio: 1.597659e-01	ci left: 4.592756e-03	ci right 5.398119e-03	k: 598	n:120000
KS ci ratio: 2.523532e-02	ci left: 1.652999e-01	ci right 1.695329e-01	k: 20089	n:120000
USP37   120000 perm   32 sec   (3802 perm/sec)   p_kst 1.674083e-01   p_cons 4.983333e-03   p_joint 2.274167e-02

Joint ci ratio: 7.223098e-02	ci left: 2.135303e-02	ci right 2.296069e-02	k: 2879	n:130000
Cons ci ratio: 1.538461e-01	ci left: 4.586821e-03	ci right 5.358592e-03	k: 645	n:130000
KS ci ratio: 2.423406e-02	ci left: 1.655120e-01	ci right 1.695798e-01	k: 21780	n:130000
USP37   130000 perm   35 sec   (3744 perm/sec)   p_kst 1.675385e-01   p_cons 4.961538e-03   p_joint 2.214615e-02

Joint ci ratio: 7.249529e-02	ci left: 1.971499e-02	ci right 2.120497e-02	k: 2863	n:140000
Cons ci ratio: 1.473681e-01	ci left: 4.657881e-03	ci right 5.405702e-03	k: 703	n:140000
KS ci ratio: 2.348766e-02	ci left: 1.639903e-01	ci right 1.678949e-01	k: 23231	n:140000
USP37   140000 perm   38 sec   (3690 perm/sec)   p_kst 1.659357e-01   p_cons 5.021429e-03   p_joint 2.045000e-02

Joint ci ratio: 7.918947e-02	ci left: 1.543642e-02	ci right 1.671572e-02	k: 2410	n:150000
Cons ci ratio: 1.415517e-01	ci left: 4.726488e-03	ci right 5.452845e-03	k: 762	n:150000
KS ci ratio: 2.270788e-02	ci left: 1.638547e-01	ci right 1.676249e-01	k: 24860	n:150000
USP37   150000 perm   41 sec   (3640 perm/sec)   p_kst 1.657333e-01   p_cons 5.080000e-03   p_joint 1.606667e-02

Joint ci ratio: 6.664945e-02	ci left: 2.045669e-02	ci right 2.187324e-02	k: 3385	n:160000
Cons ci ratio: 1.363736e-01	ci left: 4.787025e-03	ci right 5.493590e-03	k: 821	n:160000
KS ci ratio: 2.196666e-02	ci left: 1.641673e-01	ci right 1.678198e-01	k: 26558	n:160000
USP37   160000 perm   45 sec   (3590 perm/sec)   p_kst 1.659875e-01   p_cons 5.131250e-03   p_joint 2.115625e-02

Joint ci ratio: 6.594070e-02	ci left: 1.969274e-02	ci right 2.104133e-02	k: 3461	n:170000
Cons ci ratio: 1.320267e-01	ci left: 4.818109e-03	ci right 5.504816e-03	k: 876	n:170000
KS ci ratio: 2.130307e-02	ci left: 1.643219e-01	ci right 1.678660e-01	k: 28235	n:170000
USP37   170000 perm   48 sec   (3540 perm/sec)   p_kst 1.660882e-01   p_cons 5.152941e-03   p_joint 2.035882e-02

Joint ci ratio: 6.281457e-02	ci left: 2.051212e-02	ci right 2.184780e-02	k: 3811	n:180000
Cons ci ratio: 1.272498e-01	ci left: 4.910604e-03	ci right 5.583260e-03	k: 943	n:180000
KS ci ratio: 2.068376e-02	ci left: 1.646267e-01	ci right 1.680729e-01	k: 29942	n:180000
USP37   180000 perm   52 sec   (3493 perm/sec)   p_kst 1.663444e-01   p_cons 5.238889e-03   p_joint 2.117222e-02

Joint ci ratio: 6.066176e-02	ci left: 2.085249e-02	ci right 2.216216e-02	k: 4085	n:190000
Cons ci ratio: 1.247682e-01	ci left: 4.845836e-03	ci right 5.495718e-03	k: 981	n:190000
KS ci ratio: 2.015869e-02	ci left: 1.643085e-01	ci right 1.676596e-01	k: 31536	n:190000
USP37   190000 perm   55 sec   (3447 perm/sec)   p_kst 1.659789e-01   p_cons 5.163158e-03   p_joint 2.150000e-02

Joint ci ratio: 6.010460e-02	ci left: 2.019870e-02	ci right 2.145525e-02	k: 4164	n:200000
Cons ci ratio: 1.217681e-01	ci left: 4.840989e-03	ci right 5.473484e-03	k: 1030	n:200000
KS ci ratio: 1.967095e-02	ci left: 1.640330e-01	ci right 1.672967e-01	k: 33132	n:200000
USP37   200000 perm   59 sec   (3403 perm/sec)   p_kst 1.656600e-01   p_cons 5.150000e-03   p_joint 2.082000e-02

Joint ci ratio: 6.026062e-02	ci left: 1.915681e-02	ci right 2.035174e-02	k: 4147	n:210000
Cons ci ratio: 1.188638e-01	ci left: 4.846015e-03	ci right 5.463004e-03	k: 1081	n:210000
KS ci ratio: 1.918916e-02	ci left: 1.641832e-01	ci right 1.673689e-01	k: 34812	n:210000
USP37   210000 perm   63 sec   (3359 perm/sec)   p_kst 1.657714e-01   p_cons 5.147619e-03   p_joint 1.974762e-02

Joint ci ratio: 5.989209e-02	ci left: 1.852763e-02	ci right 1.967600e-02	k: 4201	n:220000
Cons ci ratio: 1.156970e-01	ci left: 4.890475e-03	ci right 5.495402e-03	k: 1141	n:220000
KS ci ratio: 1.873712e-02	ci left: 1.643794e-01	ci right 1.674930e-01	k: 36505	n:220000
USP37   220000 perm   66 sec   (3317 perm/sec)   p_kst 1.659318e-01   p_cons 5.186364e-03   p_joint 1.909545e-02

Joint ci ratio: 6.550723e-02	ci left: 1.482798e-02	ci right 1.583646e-02	k: 3525	n:230000
Cons ci ratio: 1.131495e-01	ci left: 4.897463e-03	ci right 5.489025e-03	k: 1193	n:230000
KS ci ratio: 1.852506e-02	ci left: 1.614449e-01	ci right 1.644679e-01	k: 37479	n:230000
USP37   230000 perm   70 sec   (3276 perm/sec)   p_kst 1.629522e-01   p_cons 5.186957e-03   p_joint 1.532609e-02

Joint ci ratio: 6.643301e-02	ci left: 1.382470e-02	ci right 1.477875e-02	k: 3431	n:240000
Cons ci ratio: 1.109424e-01	ci left: 4.887795e-03	ci right 5.465921e-03	k: 1241	n:240000
KS ci ratio: 1.813268e-02	ci left: 1.615118e-01	ci right 1.644713e-01	k: 39117	n:240000
USP37   240000 perm   74 sec   (3236 perm/sec)   p_kst 1.629875e-01   p_cons 5.170833e-03   p_joint 1.429583e-02

Joint ci ratio: 6.091257e-02	ci left: 1.579937e-02	ci right 1.679589e-02	k: 4073	n:250000
Cons ci ratio: 1.082707e-01	ci left: 4.933491e-03	ci right 5.502073e-03	k: 1303	n:250000
KS ci ratio: 1.723613e-02	ci left: 1.699485e-01	ci right 1.729071e-01	k: 42856	n:250000
USP37   250000 perm   78 sec   (3196 perm/sec)   p_kst 1.714240e-01   p_cons 5.212000e-03   p_joint 1.629200e-02

Joint ci ratio: 6.051085e-02	ci left: 1.540372e-02	ci right 1.636866e-02	k: 4129	n:260000
Cons ci ratio: 1.062532e-01	ci left: 4.930890e-03	ci right 5.487920e-03	k: 1353	n:260000
KS ci ratio: 1.691408e-02	ci left: 1.697653e-01	ci right 1.726651e-01	k: 44515	n:260000
USP37   260000 perm   82 sec   (3158 perm/sec)   p_kst 1.712115e-01   p_cons 5.203846e-03   p_joint 1.588077e-02

Joint ci ratio: 5.670983e-02	ci left: 1.689552e-02	ci right 1.788525e-02	k: 4694	n:270000
Cons ci ratio: 1.000309e-01	ci left: 5.372548e-03	ci right 5.941845e-03	k: 1526	n:270000
KS ci ratio: 1.661224e-02	ci left: 1.695483e-01	ci right 1.723921e-01	k: 46161	n:270000
USP37   270000 perm   86 sec   (3122 perm/sec)   p_kst 1.709667e-01   p_cons 5.651852e-03   p_joint 1.738519e-02

Joint ci ratio: 5.373243e-02	ci left: 1.815211e-02	ci right 1.915789e-02	k: 5222	n:280000
Cons ci ratio: 9.830821e-02	ci left: 5.368745e-03	ci right 5.927276e-03	k: 1580	n:280000
KS ci ratio: 1.631736e-02	ci left: 1.694967e-01	ci right 1.722887e-01	k: 47849	n:280000
USP37   280000 perm   91 sec   (3086 perm/sec)   p_kst 1.708893e-01   p_cons 5.642857e-03   p_joint 1.865000e-02

Outputting figure to mutsig2_images.part000000000187/USP37.5_3032_280000_0.17089_0.0056429_0.01865.png
                gene_name: USP37
               theta_stop: 0.098 
                    nperm: 280000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.0056 
      ci_cons_bounds_left: 0.0054 
     ci_cons_bounds_right: 0.0059 
                  p_joint: 0.019 
     ci_joint_bounds_left: 0.018 
    ci_joint_bounds_right: 0.019 

Current progress: 47 percent done.
UNC45B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.170226e-02	ci left: 7.569681e-01	ci right 7.736771e-01	k: 7654	n:10000
Cons ci ratio: 3.329911e-02	ci left: 5.710566e-01	ci right 5.904963e-01	k: 5808	n:10000
KS ci ratio: 3.769452e-02	ci left: 5.096532e-01	ci right 5.293355e-01	k: 5195	n:10000
UNC45B   10000 perm   2 sec   (5383 perm/sec)   p_kst 5.195000e-01   p_cons 5.808000e-01   p_joint 7.654000e-01

Outputting figure to mutsig2_images.part000000000187/UNC45B.4_2872_10000_0.5195_0.5808_0.7654.png
                gene_name: UNC45B
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 49 percent done.
UPF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.848410e-02	ci left: 3.855995e-01	ci right 4.048615e-01	k: 3952	n:10000
Cons ci ratio: 7.365934e-02	ci left: 2.125053e-01	ci right 2.288578e-01	k: 2206	n:10000
KS ci ratio: 4.602870e-02	ci left: 4.105999e-01	ci right 4.300466e-01	k: 4203	n:10000
UPF1   10000 perm   2 sec   (5386 perm/sec)   p_kst 4.203000e-01   p_cons 2.206000e-01   p_joint 3.952000e-01

Outputting figure to mutsig2_images.part000000000187/UPF1.4_3449_10000_0.4203_0.2206_0.3952.png
                gene_name: UPF1
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.40 

Current progress: 51 percent done.
URGCP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.987402e-02	ci left: 4.815553e-01	ci right 5.012497e-01	k: 4914	n:10000
Cons ci ratio: 3.019312e-02	ci left: 6.180386e-01	ci right 6.370870e-01	k: 6276	n:10000
KS ci ratio: 5.364460e-02	ci left: 3.386594e-01	ci right 3.574292e-01	k: 3480	n:10000
URGCP   10000 perm   2 sec   (4983 perm/sec)   p_kst 3.480000e-01   p_cons 6.276000e-01   p_joint 4.914000e-01

Outputting figure to mutsig2_images.part000000000187/URGCP.4_2820_10000_0.348_0.6276_0.4914.png
                gene_name: URGCP
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 53 percent done.
USHBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.185861e-01	ci left: 9.262972e-02	ci right 1.044053e-01	k: 984	n:10000
Cons ci ratio: 3.646732e-02	ci left: 5.261663e-01	ci right 5.458127e-01	k: 5360	n:10000
KS ci ratio: 2.702786e-01	ci left: 1.781300e-02	ci right 2.347108e-02	k: 205	n:10000
USHBP1   10000 perm   2 sec   (5547 perm/sec)   p_kst 2.050000e-02   p_cons 5.360000e-01   p_joint 9.840000e-02

Joint ci ratio: 1.018944e-01	ci left: 6.537877e-02	ci right 7.244718e-02	k: 1377	n:20000
Cons ci ratio: 2.591791e-02	ci left: 5.265566e-01	ci right 5.404337e-01	k: 10670	n:20000
KS ci ratio: 1.940254e-01	ci left: 1.805714e-02	ci right 2.198415e-02	k: 399	n:20000
USHBP1   20000 perm   4 sec   (5010 perm/sec)   p_kst 1.995000e-02   p_cons 5.335000e-01   p_joint 6.885000e-02

Joint ci ratio: 8.562464e-02	ci left: 6.249723e-02	ci right 6.812065e-02	k: 1958	n:30000
Cons ci ratio: 2.105632e-02	ci left: 5.303368e-01	ci right 5.416562e-01	k: 16080	n:30000
KS ci ratio: 1.582878e-01	ci left: 1.844573e-02	ci right 2.164817e-02	k: 600	n:30000
USHBP1   30000 perm   6 sec   (4783 perm/sec)   p_kst 2.000000e-02   p_cons 5.360000e-01   p_joint 6.526667e-02

Joint ci ratio: 8.648552e-02	ci left: 4.673343e-02	ci right 5.098237e-02	k: 1953	n:40000
Cons ci ratio: 1.750380e-02	ci left: 5.514148e-01	ci right 5.611770e-01	k: 22252	n:40000
KS ci ratio: 1.355647e-01	ci left: 1.908539e-02	ci right 2.188483e-02	k: 818	n:40000
USHBP1   40000 perm   9 sec   (4606 perm/sec)   p_kst 2.045000e-02   p_cons 5.563000e-01   p_joint 4.882500e-02

Joint ci ratio: 8.102361e-02	ci left: 4.290519e-02	ci right 4.654790e-02	k: 2235	n:50000
Cons ci ratio: 1.566613e-02	ci left: 5.516118e-01	ci right 5.603417e-01	k: 27799	n:50000
KS ci ratio: 1.205784e-01	ci left: 1.945050e-02	ci right 2.196558e-02	k: 1034	n:50000
USHBP1   50000 perm   11 sec   (4522 perm/sec)   p_kst 2.068000e-02   p_cons 5.559800e-01   p_joint 4.470000e-02

Joint ci ratio: 7.424270e-02	ci left: 4.274920e-02	ci right 4.606172e-02	k: 2663	n:60000
Cons ci ratio: 1.433591e-02	ci left: 5.507958e-01	ci right 5.587656e-01	k: 33287	n:60000
KS ci ratio: 1.095782e-01	ci left: 1.973783e-02	ci right 2.204217e-02	k: 1252	n:60000
USHBP1   60000 perm   14 sec   (4399 perm/sec)   p_kst 2.086667e-02   p_cons 5.547833e-01   p_joint 4.438333e-02

Joint ci ratio: 6.415855e-02	ci left: 4.900191e-02	ci right 5.226404e-02	k: 3543	n:70000
Cons ci ratio: 1.327936e-02	ci left: 5.508373e-01	ci right 5.582153e-01	k: 38817	n:70000
KS ci ratio: 1.015149e-01	ci left: 1.979732e-02	ci right 2.192837e-02	k: 1459	n:70000
USHBP1   70000 perm   16 sec   (4326 perm/sec)   p_kst 2.084286e-02   p_cons 5.545286e-01   p_joint 5.061429e-02

Joint ci ratio: 5.586625e-02	ci left: 5.635306e-02	ci right 5.960408e-02	k: 4637	n:80000
Cons ci ratio: 1.243345e-02	ci left: 5.506099e-01	ci right 5.575112e-01	k: 44325	n:80000
KS ci ratio: 9.506251e-02	ci left: 1.982222e-02	ci right 2.181275e-02	k: 1664	n:80000
USHBP1   80000 perm   19 sec   (4247 perm/sec)   p_kst 2.080000e-02   p_cons 5.540625e-01   p_joint 5.796250e-02

Outputting figure to mutsig2_images.part000000000187/USHBP1.4_2160_80000_0.0208_0.55406_0.057963.png
                gene_name: USHBP1
               theta_stop: 0.095 
                    nperm: 80000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.022 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.058 
     ci_joint_bounds_left: 0.056 
    ci_joint_bounds_right: 0.060 

Current progress: 56 percent done.
USP15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.421012e-02	ci left: 5.578216e-01	ci right 5.773390e-01	k: 5676	n:10000
KS ci ratio: 1.721807e-02	ci left: 8.309356e-01	ci right 8.454668e-01	k: 8383	n:10000
USP15   10000 perm   2 sec   (5539 perm/sec)   p_kst 8.383000e-01   p_cons 5.676000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000187/USP15.4_2943_10000_0.8383_0.5676_1.png
                gene_name: USP15
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 58 percent done.
USP28
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.213439e-02	ci left: 2.757699e-01	ci right 2.935557e-01	k: 2846	n:10000
Cons ci ratio: 9.148904e-02	ci left: 1.479580e-01	ci right 1.622435e-01	k: 1550	n:10000
KS ci ratio: 4.354051e-02	ci left: 4.378206e-01	ci right 4.574099e-01	k: 4476	n:10000
USP28   10000 perm   2 sec   (5310 perm/sec)   p_kst 4.476000e-01   p_cons 1.550000e-01   p_joint 2.846000e-01

Outputting figure to mutsig2_images.part000000000187/USP28.4_3334_10000_0.4476_0.155_0.2846.png
                gene_name: USP28
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 60 percent done.
USP42
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.054030e-01	ci left: 1.150598e-01	ci right 1.279615e-01	k: 1214	n:10000
Cons ci ratio: 1.634652e-02	ci left: 8.447858e-01	ci right 8.588086e-01	k: 8519	n:10000
KS ci ratio: 1.407264e-01	ci left: 6.691220e-02	ci right 7.713880e-02	k: 719	n:10000
USP42   10000 perm   2 sec   (5526 perm/sec)   p_kst 7.190000e-02   p_cons 8.519000e-01   p_joint 1.214000e-01

Joint ci ratio: 7.636853e-02	ci left: 1.119372e-01	ci right 1.208747e-01	k: 2327	n:20000
Cons ci ratio: 1.190848e-02	ci left: 8.390988e-01	ci right 8.492009e-01	k: 16884	n:20000
KS ci ratio: 9.713258e-02	ci left: 7.163100e-02	ci right 7.899304e-02	k: 1505	n:20000
USP42   20000 perm   4 sec   (5003 perm/sec)   p_kst 7.525000e-02   p_cons 8.442000e-01   p_joint 1.163500e-01

Outputting figure to mutsig2_images.part000000000187/USP42.4_2571_20000_0.07525_0.8442_0.11635.png
                gene_name: USP42
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.075 
        ci_ks_bounds_left: 0.072 
       ci_ks_bounds_right: 0.079 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 62 percent done.
UPP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.179401e-02	ci left: 3.546598e-01	ci right 3.736194e-01	k: 3641	n:10000
Cons ci ratio: 7.510200e-02	ci left: 2.059958e-01	ci right 2.221711e-01	k: 2140	n:10000
KS ci ratio: 3.752127e-02	ci left: 5.119543e-01	ci right 5.316330e-01	k: 5218	n:10000
UPP1   10000 perm   2 sec   (6664 perm/sec)   p_kst 5.218000e-01   p_cons 2.140000e-01   p_joint 3.641000e-01

Outputting figure to mutsig2_images.part000000000187/UPP1.3_961_10000_0.5218_0.214_0.3641.png
                gene_name: UPP1
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 64 percent done.
UQCC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.844114e-02	ci left: 4.998504e-01	ci right 5.195439e-01	k: 5097	n:10000
Cons ci ratio: 1.176608e-01	ci left: 9.399250e-02	ci right 1.058417e-01	k: 998	n:10000
KS ci ratio: 1.513557e-02	ci left: 8.635571e-01	ci right 8.768264e-01	k: 8703	n:10000
UQCC   10000 perm   1 sec   (6685 perm/sec)   p_kst 8.703000e-01   p_cons 9.980000e-02   p_joint 5.097000e-01

Joint ci ratio: 4.109409e-02	ci left: 3.062279e-01	ci right 3.191266e-01	k: 6253	n:20000
Cons ci ratio: 8.333946e-02	ci left: 9.543404e-02	ci right 1.037828e-01	k: 1991	n:20000
KS ci ratio: 1.072519e-02	ci left: 8.650573e-01	ci right 8.744349e-01	k: 17396	n:20000
UQCC   20000 perm   3 sec   (5819 perm/sec)   p_kst 8.698000e-01   p_cons 9.955000e-02   p_joint 3.126500e-01

Outputting figure to mutsig2_images.part000000000187/UQCC.3_940_20000_0.8698_0.09955_0.31265.png
                gene_name: UQCC
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.100 
      ci_cons_bounds_left: 0.095 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 67 percent done.
UROC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.665096e-02	ci left: 5.236636e-01	ci right 5.433168e-01	k: 5335	n:10000
KS ci ratio: 2.791418e-02	ci left: 6.541423e-01	ci right 6.727624e-01	k: 6635	n:10000
UROC1   10000 perm   2 sec   (5913 perm/sec)   p_kst 6.635000e-01   p_cons 5.335000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000187/UROC1.3_2295_10000_0.6635_0.5335_1.png
                gene_name: UROC1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 69 percent done.
USP19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.648198e-02	ci left: 5.259661e-01	ci right 5.456130e-01	k: 5358	n:10000
KS ci ratio: 2.834659e-02	ci left: 6.471987e-01	ci right 6.659100e-01	k: 6566	n:10000
USP19   10000 perm   2 sec   (5247 perm/sec)   p_kst 6.566000e-01   p_cons 5.358000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000187/USP19.3_4057_10000_0.6566_0.5358_1.png
                gene_name: USP19
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
USP21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.023059e-02	ci left: 9.313350e-01	ci right 9.410090e-01	k: 9363	n:10000
KS ci ratio: 1.552184e-02	ci left: 8.576357e-01	ci right 8.711513e-01	k: 8645	n:10000
USP21   10000 perm   2 sec   (5999 perm/sec)   p_kst 8.645000e-01   p_cons 9.363000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000187/USP21.3_1746_10000_0.8645_0.9363_1.png
                gene_name: USP21
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
USP26
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.894348e-02	ci left: 3.811202e-01	ci right 4.003435e-01	k: 3907	n:10000
Cons ci ratio: 7.472467e-02	ci left: 2.076722e-01	ci right 2.238937e-01	k: 2157	n:10000
KS ci ratio: 3.168419e-02	ci left: 5.951385e-01	ci right 6.144005e-01	k: 6048	n:10000
USP26   10000 perm   2 sec   (5698 perm/sec)   p_kst 6.048000e-01   p_cons 2.157000e-01   p_joint 3.907000e-01

Outputting figure to mutsig2_images.part000000000187/USP26.3_2745_10000_0.6048_0.2157_0.3907.png
                gene_name: USP26
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 76 percent done.
USP30
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.374510e-02	ci left: 2.121107e-01	ci right 2.284526e-01	k: 2202	n:10000
Cons ci ratio: 4.282482e-03	ci left: 9.859942e-01	ci right 9.903144e-01	k: 9883	n:10000
KS ci ratio: 1.161173e-01	ci left: 9.632952e-02	ci right 1.083033e-01	k: 1022	n:10000
USP30   10000 perm   2 sec   (6001 perm/sec)   p_kst 1.022000e-01   p_cons 9.883000e-01   p_joint 2.202000e-01

Joint ci ratio: 5.862550e-02	ci left: 1.773166e-01	ci right 1.880758e-01	k: 3653	n:20000
Cons ci ratio: 2.861843e-03	ci left: 9.879889e-01	ci right 9.908661e-01	k: 19790	n:20000
KS ci ratio: 8.137980e-02	ci left: 9.970398e-02	ci right 1.082116e-01	k: 2078	n:20000
USP30   20000 perm   4 sec   (5384 perm/sec)   p_kst 1.039000e-01   p_cons 9.895000e-01   p_joint 1.826500e-01

Outputting figure to mutsig2_images.part000000000187/USP30.3_1606_20000_0.1039_0.9895_0.18265.png
                gene_name: USP30
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.100 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 78 percent done.
USP31
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.683164e-02	ci left: 1.339403e-01	ci right 1.476696e-01	k: 1407	n:10000
Cons ci ratio: 1.841078e-02	ci left: 8.116160e-01	ci right 8.267975e-01	k: 8193	n:10000
KS ci ratio: 1.655280e-01	ci left: 4.868974e-02	ci right 5.757286e-02	k: 530	n:10000
USP31   10000 perm   2 sec   (5090 perm/sec)   p_kst 5.300000e-02   p_cons 8.193000e-01   p_joint 1.407000e-01

Joint ci ratio: 8.705255e-02	ci left: 8.802889e-02	ci right 9.609016e-02	k: 1840	n:20000
Cons ci ratio: 1.276230e-02	ci left: 8.197631e-01	ci right 8.303423e-01	k: 16502	n:20000
KS ci ratio: 1.200010e-01	ci left: 4.760289e-02	ci right 5.372858e-02	k: 1012	n:20000
USP31   20000 perm   4 sec   (4598 perm/sec)   p_kst 5.060000e-02   p_cons 8.251000e-01   p_joint 9.200000e-02

Joint ci ratio: 8.100847e-02	ci left: 6.945964e-02	ci right 7.535682e-02	k: 2171	n:30000
Cons ci ratio: 1.051277e-02	ci left: 8.181621e-01	ci right 8.268420e-01	k: 24676	n:30000
KS ci ratio: 1.006797e-01	ci left: 4.567332e-02	ci right 5.054801e-02	k: 1442	n:30000
USP31   30000 perm   7 sec   (4405 perm/sec)   p_kst 4.806667e-02   p_cons 8.225333e-01   p_joint 7.236667e-02

Joint ci ratio: 7.334552e-02	ci left: 6.420023e-02	ci right 6.911291e-02	k: 2665	n:40000
Cons ci ratio: 9.397894e-03	ci left: 8.092194e-01	ci right 8.168851e-01	k: 32523	n:40000
KS ci ratio: 8.669564e-02	ci left: 4.651307e-02	ci right 5.075276e-02	k: 1944	n:40000
USP31   40000 perm   9 sec   (4281 perm/sec)   p_kst 4.860000e-02   p_cons 8.130750e-01   p_joint 6.662500e-02

Outputting figure to mutsig2_images.part000000000187/USP31.3_4123_40000_0.0486_0.81307_0.066625.png
                gene_name: USP31
               theta_stop: 0.087 
                    nperm: 40000 
                     p_ks: 0.049 
        ci_ks_bounds_left: 0.047 
       ci_ks_bounds_right: 0.051 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.067 
     ci_joint_bounds_left: 0.064 
    ci_joint_bounds_right: 0.069 

Current progress: 80 percent done.
USP35
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.461592e-02	ci left: 3.306139e-01	ci right 3.492795e-01	k: 3399	n:10000
Cons ci ratio: 1.090626e-01	ci left: 1.081269e-01	ci right 1.206987e-01	k: 1143	n:10000
KS ci ratio: 2.208869e-02	ci left: 7.504927e-01	ci right 7.673562e-01	k: 7590	n:10000
USP35   10000 perm   2 sec   (5577 perm/sec)   p_kst 7.590000e-01   p_cons 1.143000e-01   p_joint 3.399000e-01

Joint ci ratio: 3.141121e-02	ci left: 4.308589e-01	ci right 4.446592e-01	k: 8755	n:20000
Cons ci ratio: 7.779378e-02	ci left: 1.082507e-01	ci right 1.170623e-01	k: 2252	n:20000
KS ci ratio: 1.575571e-02	ci left: 7.497841e-01	ci right 7.617415e-01	k: 15116	n:20000
USP35   20000 perm   4 sec   (5007 perm/sec)   p_kst 7.558000e-01   p_cons 1.126000e-01   p_joint 4.377500e-01

Outputting figure to mutsig2_images.part000000000187/USP35.3_3097_20000_0.7558_0.1126_0.43775.png
                gene_name: USP35
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.44 

Current progress: 82 percent done.
USP40
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.527067e-02	ci left: 6.973649e-01	ci right 7.153147e-01	k: 7064	n:10000
Cons ci ratio: 8.682941e-02	ci left: 1.618987e-01	ci right 1.766945e-01	k: 1692	n:10000
KS ci ratio: 2.134564e-02	ci left: 7.629399e-01	ci right 7.795018e-01	k: 7713	n:10000
USP40   10000 perm   2 sec   (5184 perm/sec)   p_kst 7.713000e-01   p_cons 1.692000e-01   p_joint 7.064000e-01

Outputting figure to mutsig2_images.part000000000187/USP40.3_3796_10000_0.7713_0.1692_0.7064.png
                gene_name: USP40
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 84 percent done.
UNC5B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.679838e-03	ci left: 9.378606e-01	ci right 9.470795e-01	k: 9426	n:10000
Cons ci ratio: 9.197123e-03	ci left: 9.433622e-01	ci right 9.521746e-01	k: 9479	n:10000
KS ci ratio: 2.928904e-02	ci left: 6.322118e-01	ci right 6.511057e-01	k: 6417	n:10000
UNC5B   10000 perm   2 sec   (5988 perm/sec)   p_kst 6.417000e-01   p_cons 9.479000e-01   p_joint 9.426000e-01

Outputting figure to mutsig2_images.part000000000187/UNC5B.2_2906_10000_0.6417_0.9479_0.9426.png
                gene_name: UNC5B
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 87 percent done.
UNC93A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.289722e-02	ci left: 7.369431e-01	ci right 7.541136e-01	k: 7456	n:10000
Cons ci ratio: 5.331531e-02	ci left: 3.414412e-01	ci right 3.602457e-01	k: 3508	n:10000
KS ci ratio: 1.119938e-02	ci left: 9.192503e-01	ci right 9.297008e-01	k: 9246	n:10000
UNC93A   10000 perm   1 sec   (6797 perm/sec)   p_kst 9.246000e-01   p_cons 3.508000e-01   p_joint 7.456000e-01

Outputting figure to mutsig2_images.part000000000187/UNC93A.2_1406_10000_0.9246_0.3508_0.7456.png
                gene_name: UNC93A
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.75 

Current progress: 89 percent done.
UQCRFS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.357936e-02	ci left: 7.255253e-01	ci right 7.429380e-01	k: 7343	n:10000
KS ci ratio: 1.891855e-02	ci left: 8.032880e-01	ci right 8.187304e-01	k: 8111	n:10000
UQCRFS1   10000 perm   1 sec   (7206 perm/sec)   p_kst 8.111000e-01   p_cons 7.343000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000187/UQCRFS1.2_833_10000_0.8111_0.7343_1.png
                gene_name: UQCRFS1
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
USP16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.323079e-02	ci left: 5.720595e-01	ci right 5.914928e-01	k: 5818	n:10000
Cons ci ratio: 6.186093e-02	ci left: 2.775527e-01	ci right 2.953719e-01	k: 2864	n:10000
KS ci ratio: 2.246282e-02	ci left: 7.442221e-01	ci right 7.612304e-01	k: 7528	n:10000
USP16   10000 perm   2 sec   (6014 perm/sec)   p_kst 7.528000e-01   p_cons 2.864000e-01   p_joint 5.818000e-01

Outputting figure to mutsig2_images.part000000000187/USP16.2_2540_10000_0.7528_0.2864_0.5818.png
                gene_name: USP16
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 93 percent done.
USP17L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.671973e-01	ci left: 4.772935e-02	ci right 5.653387e-02	k: 520	n:10000
Cons ci ratio: 2.723101e-01	ci left: 1.753307e-02	ci right 2.315124e-02	k: 202	n:10000
KS ci ratio: 3.734125e-02	ci left: 5.143558e-01	ci right 5.340301e-01	k: 5242	n:10000
USP17L2   10000 perm   1 sec   (6726 perm/sec)   p_kst 5.242000e-01   p_cons 2.020000e-02   p_joint 5.200000e-02

Joint ci ratio: 1.826955e-01	ci left: 2.044155e-02	ci right 2.459888e-02	k: 449	n:20000
Cons ci ratio: 1.918348e-01	ci left: 1.848579e-02	ci right 2.245535e-02	k: 408	n:20000
KS ci ratio: 2.649357e-02	ci left: 5.155997e-01	ci right 5.294938e-01	k: 10451	n:20000
USP17L2   20000 perm   3 sec   (5935 perm/sec)   p_kst 5.225500e-01   p_cons 2.040000e-02   p_joint 2.245000e-02

Joint ci ratio: 1.215618e-01	ci left: 3.146011e-02	ci right 3.556422e-02	k: 1004	n:30000
Cons ci ratio: 1.560504e-01	ci left: 1.899051e-02	ci right 2.223659e-02	k: 617	n:30000
KS ci ratio: 2.173161e-02	ci left: 5.145950e-01	ci right 5.259344e-01	k: 15608	n:30000
USP17L2   30000 perm   5 sec   (5500 perm/sec)   p_kst 5.202667e-01   p_cons 2.056667e-02   p_joint 3.346667e-02

Joint ci ratio: 6.413112e-02	ci left: 8.267885e-02	ci right 8.818151e-02	k: 3416	n:40000
Cons ci ratio: 1.232885e-01	ci left: 2.312831e-02	ci right 2.619122e-02	k: 985	n:40000
KS ci ratio: 1.881249e-02	ci left: 5.155654e-01	ci right 5.253817e-01	k: 20819	n:40000
USP17L2   40000 perm   7 sec   (5338 perm/sec)   p_kst 5.204750e-01   p_cons 2.462500e-02   p_joint 8.540000e-02

Joint ci ratio: 6.826941e-02	ci left: 5.974425e-02	ci right 6.398679e-02	k: 3092	n:50000
Cons ci ratio: 1.084595e-01	ci left: 2.407746e-02	ci right 2.685801e-02	k: 1272	n:50000
KS ci ratio: 1.687158e-02	ci left: 5.147496e-01	ci right 5.235282e-01	k: 25957	n:50000
USP17L2   50000 perm   10 sec   (5214 perm/sec)   p_kst 5.191400e-01   p_cons 2.544000e-02   p_joint 6.184000e-02

Joint ci ratio: 6.244329e-02	ci left: 5.970554e-02	ci right 6.357033e-02	k: 3697	n:60000
Cons ci ratio: 9.939761e-02	ci left: 2.400936e-02	ci right 2.653684e-02	k: 1515	n:60000
KS ci ratio: 1.541111e-02	ci left: 5.148262e-01	ci right 5.228386e-01	k: 31130	n:60000
USP17L2   60000 perm   12 sec   (5100 perm/sec)   p_kst 5.188333e-01   p_cons 2.525000e-02   p_joint 6.161667e-02

Outputting figure to mutsig2_images.part000000000187/USP17L2.2_1597_60000_0.51883_0.02525_0.061617.png
                gene_name: USP17L2
               theta_stop: 0.099 
                    nperm: 60000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.025 
      ci_cons_bounds_left: 0.024 
     ci_cons_bounds_right: 0.027 
                  p_joint: 0.062 
     ci_joint_bounds_left: 0.060 
    ci_joint_bounds_right: 0.064 

Current progress: 96 percent done.
USP20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.892293e-02	ci left: 3.813192e-01	ci right 4.005443e-01	k: 3909	n:10000
Cons ci ratio: 9.110698e-02	ci left: 1.490372e-01	ci right 1.633637e-01	k: 1561	n:10000
KS ci ratio: 9.103802e-03	ci left: 9.444016e-01	ci right 9.531346e-01	k: 9489	n:10000
USP20   10000 perm   2 sec   (5866 perm/sec)   p_kst 9.489000e-01   p_cons 1.561000e-01   p_joint 3.909000e-01

Outputting figure to mutsig2_images.part000000000187/USP20.2_2837_10000_0.9489_0.1561_0.3909.png
                gene_name: USP20
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 98 percent done.
USP36
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.143295e-02	ci left: 5.989536e-01	ci right 6.181831e-01	k: 6086	n:10000
Cons ci ratio: 2.954286e-01	ci left: 1.474309e-02	ci right 1.994354e-02	k: 172	n:10000
KS ci ratio: 1.710413e-01	ci left: 4.561810e-02	ci right 5.424649e-02	k: 498	n:10000
USP36   10000 perm   2 sec   (5637 perm/sec)   p_kst 4.980000e-02   p_cons 1.720000e-02   p_joint 6.086000e-01

Joint ci ratio: 1.657632e-01	ci left: 2.494157e-02	ci right 2.949728e-02	k: 543	n:20000
Cons ci ratio: 2.110880e-01	ci left: 1.515911e-02	ci right 1.878328e-02	k: 338	n:20000
KS ci ratio: 1.217194e-01	ci left: 4.629176e-02	ci right 5.234013e-02	k: 985	n:20000
USP36   20000 perm   4 sec   (5081 perm/sec)   p_kst 4.925000e-02   p_cons 1.690000e-02   p_joint 2.715000e-02

Joint ci ratio: 2.207657e-01	ci left: 9.251451e-03	ci right 1.157816e-02	k: 311	n:30000
Cons ci ratio: 1.724403e-01	ci left: 1.547168e-02	ci right 1.842294e-02	k: 507	n:30000
KS ci ratio: 9.799811e-02	ci left: 4.814675e-02	ci right 5.314073e-02	k: 1518	n:30000
USP36   30000 perm   6 sec   (4867 perm/sec)   p_kst 5.060000e-02   p_cons 1.690000e-02   p_joint 1.036667e-02

Joint ci ratio: 6.269731e-02	ci left: 8.622697e-02	ci right 9.183286e-02	k: 3560	n:40000
Cons ci ratio: 1.465389e-01	ci left: 1.628581e-02	ci right 1.888490e-02	k: 702	n:40000
KS ci ratio: 8.481038e-02	ci left: 4.854575e-02	ci right 5.286977e-02	k: 2027	n:40000
USP36   40000 perm   8 sec   (4713 perm/sec)   p_kst 5.067500e-02   p_cons 1.755000e-02   p_joint 8.900000e-02

Joint ci ratio: 5.192521e-02	ci left: 9.965691e-02	ci right 1.049894e-01	k: 5115	n:50000
Cons ci ratio: 1.318150e-01	ci left: 1.623327e-02	ci right 1.854325e-02	k: 868	n:50000
KS ci ratio: 7.577818e-02	ci left: 4.887174e-02	ci right 5.274063e-02	k: 2539	n:50000
USP36   50000 perm   11 sec   (4603 perm/sec)   p_kst 5.078000e-02   p_cons 1.736000e-02   p_joint 1.023000e-01

Joint ci ratio: 4.670991e-02	ci left: 1.025909e-01	ci right 1.075140e-01	k: 6302	n:60000
Cons ci ratio: 1.212086e-01	ci left: 1.609389e-02	ci right 1.818652e-02	k: 1027	n:60000
KS ci ratio: 6.946440e-02	ci left: 4.864657e-02	ci right 5.216375e-02	k: 3023	n:60000
USP36   60000 perm   13 sec   (4506 perm/sec)   p_kst 5.038333e-02   p_cons 1.711667e-02   p_joint 1.050333e-01

Joint ci ratio: 4.687553e-02	ci left: 8.869549e-02	ci right 9.296707e-02	k: 6357	n:70000
Cons ci ratio: 1.118071e-01	ci left: 1.629143e-02	ci right 1.823459e-02	k: 1207	n:70000
KS ci ratio: 6.436927e-02	ci left: 4.869241e-02	ci right 5.194499e-02	k: 3521	n:70000
USP36   70000 perm   16 sec   (4427 perm/sec)   p_kst 5.030000e-02   p_cons 1.724286e-02   p_joint 9.081429e-02

Joint ci ratio: 3.816161e-02	ci left: 1.142969e-01	ci right 1.187559e-01	k: 9321	n:80000
Cons ci ratio: 1.043392e-01	ci left: 1.643213e-02	ci right 1.825312e-02	k: 1386	n:80000
KS ci ratio: 6.032366e-02	ci left: 4.862304e-02	ci right 5.165968e-02	k: 4010	n:80000
USP36   80000 perm   18 sec   (4362 perm/sec)   p_kst 5.012500e-02   p_cons 1.732500e-02   p_joint 1.165125e-01

Joint ci ratio: 3.596991e-02	ci left: 1.144770e-01	ci right 1.186811e-01	k: 10491	n:90000
Cons ci ratio: 9.877131e-02	ci left: 1.634977e-02	ci right 1.805933e-02	k: 1547	n:90000
KS ci ratio: 5.688285e-02	ci left: 4.869469e-02	ci right 5.155661e-02	k: 4510	n:90000
USP36   90000 perm   21 sec   (4294 perm/sec)   p_kst 5.011111e-02   p_cons 1.718889e-02   p_joint 1.165667e-01

Outputting figure to mutsig2_images.part000000000187/USP36.2_3444_90000_0.050111_0.017189_0.11657.png
                gene_name: USP36
               theta_stop: 0.099 
                    nperm: 90000 
                     p_ks: 0.050 
        ci_ks_bounds_left: 0.049 
       ci_ks_bounds_right: 0.052 
                   p_cons: 0.017 
      ci_cons_bounds_left: 0.016 
     ci_cons_bounds_right: 0.018 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000187
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 187 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1652>
Subject: Job 8004686: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1652>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000188> was used as the working directory.
Started at Sun Nov 11 15:24:45 2012
Results reported at Sun Nov 11 18:32:40 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000188.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000188.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 188  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000188.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  11441.68 sec.
    Max Memory :      4733 MB
    Max Swap   :      7120 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
188
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 188
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 188: processing genes 16919 - 17008
Calculating significance of each gene.
Using projection method.
16919	USP43	9.527126e-01
16920	USP44	1
16921	USP45	9.374272e-01
16922	USP46	1.398675e-01
16923	USP47	7.553637e-01
16924	USP48	1
16925	USP49	8.783422e-01
16926	USP5	9.307041e-01
16927	USP50	2.551639e-01
16928	USP51	1
16929	USP53	9.615037e-01
16930	USP54	5.328770e-01
16931	USP6	2.827907e-01
16932	USP6NL	2.240859e-01
16933	USP7	4.519484e-01
16934	USP8	6.868660e-01
16935	USP9X	6.930613e-01
16936	USP9Y	9.973093e-01
16937	USPL1	8.828535e-01
16938	UST	6.408704e-01
16939	UTP11L	4.019940e-01
16940	UTP14A	9.077071e-01
16941	UTP14C	6.752201e-01
16942	UTP15	8.090383e-01
16943	UTP18	1
16944	UTP20	9.980045e-01
16945	UTP23	1
16946	UTP3	2.878203e-01
16947	UTP6	5.599093e-01
16948	UTRN	9.884799e-01
16949	UTS2	1
16950	UTS2D	2.290574e-01
16951	UTS2R	1
16952	UTY	9.853293e-01
16953	UVRAG	6.573557e-01
16954	UXS1	3.216957e-02
16955	UXT	1
16956	VAC14	4.297073e-01
16957	VAMP1	1
16958	VAMP2	1
16959	VAMP3	1
16960	VAMP4	1
16961	VAMP5	1
16962	VAMP7	3.485040e-02
16963	VAMP8	1
16964	VANGL1	8.126332e-01
16965	VANGL2	1
16966	VAPA	6.960285e-01
16967	VAPB	1.536871e-01
16968	VARS	9.281404e-01
16969	VARS2	9.938536e-01
16970	VASH1	1
16971	VASH2	6.691146e-01
16972	VASN	8.993811e-01
16973	VASP	4.077324e-01
16974	VAT1	1
16975	VAT1L	7.429016e-03
16976	VAV1	7.894775e-02
16977	VAV2	9.387476e-01
16978	VAV3	9.155188e-01
16979	VAX1	1
16980	VAX2	6.132347e-01
16981	VBP1	8.634916e-02
16982	VCAM1	2.163976e-01
16983	VCAN	9.993293e-01
16984	VCL	9.519571e-01
16985	VCP	9.316148e-01
16986	VCPIP1	7.889428e-01
16987	VCX	1
16988	VCX2	1
16989	VCX3A	1.162218e-01
16990	VCX3B	2.407176e-01
16991	VDAC1	5.691827e-01
16992	VDAC2	1
16993	VDAC3	1
16994	VDR	1
16995	VEGFA	1
16996	VEGFB	1
16997	VEGFC	7.768920e-03
16998	VENTX	1.059562e-01
16999	VEPH1	1
17000/18094 17000	VEZF1	2.245746e-01
17001	VEZT	2.359345e-02
17002	VGF	4.520476e-01
17003	VGLL1	2.696028e-01
17004	VGLL2	1.622323e-01
17005	VGLL3	1.290029e-01
17006	VGLL4	1
17007	VHL	2.650202e-01
17008	VHLL	1
Done

Running MutSig 2:
Scatter job 188: processing genes 16919 - 17008
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
VCAN
Processing conservation and coverage...
97% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.633897e-02	ci left: 3.169137e-01	ci right 3.353876e-01	k: 3261	n:10000
Cons ci ratio: 6.090642e-02	ci left: 2.838926e-01	ci right 3.018282e-01	k: 2928	n:10000
KS ci ratio: 5.895076e-02	ci left: 2.974712e-01	ci right 3.156416e-01	k: 3065	n:10000
VCAN   10000 perm   3 sec   (3172 perm/sec)   p_kst 3.065000e-01   p_cons 2.928000e-01   p_joint 3.261000e-01

Outputting figure to mutsig2_images.part000000000188/VCAN.23_10247_10000_0.3065_0.2928_0.3261.png
                gene_name: VCAN
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 2 percent done.
UTRN
Processing conservation and coverage...
94% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.863244e-03	ci left: 9.574375e-01	ci right 9.650907e-01	k: 9614	n:10000
KS ci ratio: 2.239042e-02	ci left: 7.454356e-01	ci right 7.624162e-01	k: 7540	n:10000
UTRN   10000 perm   3 sec   (3216 perm/sec)   p_kst 7.540000e-01   p_cons 9.614000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000188/UTRN.15_10598_10000_0.754_0.9614_1.png
                gene_name: UTRN
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 4 percent done.
UTP20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.543521e-02	ci left: 6.946419e-01	ci right 7.126393e-01	k: 7037	n:10000
Cons ci ratio: 2.554502e-02	ci left: 6.928268e-01	ci right 7.108555e-01	k: 7019	n:10000
KS ci ratio: 3.592106e-02	ci left: 5.336759e-01	ci right 5.532988e-01	k: 5435	n:10000
UTP20   10000 perm   3 sec   (3470 perm/sec)   p_kst 5.435000e-01   p_cons 7.019000e-01   p_joint 7.037000e-01

Outputting figure to mutsig2_images.part000000000188/UTP20.11_8606_10000_0.5435_0.7019_0.7037.png
                gene_name: UTP20
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 7 percent done.
VEPH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.385883e-02	ci left: 4.342293e-01	ci right 4.538033e-01	k: 4440	n:10000
Cons ci ratio: 3.636482e-02	ci left: 5.275679e-01	ci right 5.472103e-01	k: 5374	n:10000
KS ci ratio: 6.480061e-02	ci left: 2.591396e-01	ci right 2.765958e-01	k: 2678	n:10000
VEPH1   10000 perm   2 sec   (4875 perm/sec)   p_kst 2.678000e-01   p_cons 5.374000e-01   p_joint 4.440000e-01

Outputting figure to mutsig2_images.part000000000188/VEPH1.10_2676_10000_0.2678_0.5374_0.444.png
                gene_name: VEPH1
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 9 percent done.
USP9X
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.587755e-02	ci left: 8.521264e-01	ci right 8.658638e-01	k: 8591	n:10000
Cons ci ratio: 2.435360e-02	ci left: 7.126006e-01	ci right 7.302702e-01	k: 7215	n:10000
KS ci ratio: 2.466281e-02	ci left: 7.074534e-01	ci right 7.252204e-01	k: 7164	n:10000
USP9X   10000 perm   3 sec   (3534 perm/sec)   p_kst 7.164000e-01   p_cons 7.215000e-01   p_joint 8.591000e-01

Outputting figure to mutsig2_images.part000000000188/USP9X.9_7889_10000_0.7164_0.7215_0.8591.png
                gene_name: USP9X
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 11 percent done.
USP54
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.363681e-02	ci left: 1.725141e-01	ci right 1.876728e-01	k: 1800	n:10000
Cons ci ratio: 3.536729e-02	ci left: 5.413880e-01	ci right 5.609822e-01	k: 5512	n:10000
KS ci ratio: 9.334826e-02	ci left: 1.428581e-01	ci right 1.569465e-01	k: 1498	n:10000
USP54   10000 perm   2 sec   (4279 perm/sec)   p_kst 1.498000e-01   p_cons 5.512000e-01   p_joint 1.800000e-01

Outputting figure to mutsig2_images.part000000000188/USP54.8_5143_10000_0.1498_0.5512_0.18.png
                gene_name: USP54
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.19 

Current progress: 13 percent done.
USP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.239686e-03	ci left: 9.634151e-01	ci right 9.705095e-01	k: 9671	n:10000
KS ci ratio: 1.150142e-02	ci left: 9.153336e-01	ci right 9.260198e-01	k: 9208	n:10000
USP6   10000 perm   2 sec   (4433 perm/sec)   p_kst 9.208000e-01   p_cons 9.671000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000188/USP6.8_4337_10000_0.9208_0.9671_1.png
                gene_name: USP6
               theta_stop: 0.012 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 15 percent done.
VCPIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.394138e-02	ci left: 3.361759e-01	ci right 3.549142e-01	k: 3455	n:10000
Cons ci ratio: 5.404887e-02	ci left: 3.352819e-01	ci right 3.540087e-01	k: 3446	n:10000
KS ci ratio: 6.056996e-02	ci left: 2.861716e-01	ci right 3.041479e-01	k: 2951	n:10000
VCPIP1   10000 perm   2 sec   (4847 perm/sec)   p_kst 2.951000e-01   p_cons 3.446000e-01   p_joint 3.455000e-01

Outputting figure to mutsig2_images.part000000000188/VCPIP1.8_3681_10000_0.2951_0.3446_0.3455.png
                gene_name: VCPIP1
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 17 percent done.
VAV1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.920980e-02	ci left: 4.899514e-01	ci right 5.096487e-01	k: 4998	n:10000
Cons ci ratio: 5.364460e-02	ci left: 3.386594e-01	ci right 3.574292e-01	k: 3480	n:10000
KS ci ratio: 3.297202e-02	ci left: 5.758711e-01	ci right 5.952790e-01	k: 5856	n:10000
VAV1   10000 perm   2 sec   (5273 perm/sec)   p_kst 5.856000e-01   p_cons 3.480000e-01   p_joint 4.998000e-01

Outputting figure to mutsig2_images.part000000000188/VAV1.7_2646_10000_0.5856_0.348_0.4998.png
                gene_name: VAV1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 20 percent done.
VEZT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.357589e-01	ci left: 2.372311e-02	ci right 3.015646e-02	k: 268	n:10000
Cons ci ratio: 3.220289e-01	ci left: 1.224928e-02	ci right 1.703957e-02	k: 145	n:10000
KS ci ratio: 9.233604e-02	ci left: 1.456039e-01	ci right 1.597991e-01	k: 1526	n:10000
VEZT   10000 perm   2 sec   (5296 perm/sec)   p_kst 1.526000e-01   p_cons 1.450000e-02   p_joint 2.680000e-02

Joint ci ratio: 1.134279e-01	ci left: 5.314517e-02	ci right 5.958457e-02	k: 1126	n:20000
Cons ci ratio: 2.277143e-01	ci left: 1.293634e-02	ci right 1.630694e-02	k: 291	n:20000
KS ci ratio: 6.629463e-02	ci left: 1.438447e-01	ci right 1.537576e-01	k: 2975	n:20000
VEZT   20000 perm   4 sec   (4746 perm/sec)   p_kst 1.487500e-01   p_cons 1.455000e-02   p_joint 5.630000e-02

Joint ci ratio: 1.166657e-01	ci left: 3.414708e-02	ci right 3.841000e-02	k: 1087	n:30000
Cons ci ratio: 1.855002e-01	ci left: 1.330502e-02	ci right 1.605681e-02	k: 439	n:30000
KS ci ratio: 5.404432e-02	ci left: 1.451528e-01	ci right 1.532486e-01	k: 4475	n:30000
VEZT   30000 perm   7 sec   (4548 perm/sec)   p_kst 1.491667e-01   p_cons 1.463333e-02   p_joint 3.623333e-02

Joint ci ratio: 1.094436e-01	ci left: 2.937180e-02	ci right 3.279672e-02	k: 1242	n:40000
Cons ci ratio: 1.510873e-01	ci left: 1.529838e-02	ci right 1.782251e-02	k: 661	n:40000
KS ci ratio: 4.676245e-02	ci left: 1.459196e-01	ci right 1.529314e-01	k: 5976	n:40000
VEZT   40000 perm   9 sec   (4414 perm/sec)   p_kst 1.494000e-01   p_cons 1.652500e-02   p_joint 3.105000e-02

Joint ci ratio: 1.056405e-01	ci left: 2.538247e-02	ci right 2.823283e-02	k: 1339	n:50000
Cons ci ratio: 1.352616e-01	ci left: 1.540155e-02	ci right 1.765509e-02	k: 825	n:50000
KS ci ratio: 4.181991e-02	ci left: 1.463254e-01	ci right 1.525953e-01	k: 7472	n:50000
VEZT   50000 perm   12 sec   (4303 perm/sec)   p_kst 1.494400e-01   p_cons 1.650000e-02   p_joint 2.678000e-02

Joint ci ratio: 1.039933e-01	ci left: 2.192902e-02	ci right 2.435074e-02	k: 1387	n:60000
Cons ci ratio: 1.318555e-01	ci left: 1.355870e-02	ci right 1.548867e-02	k: 870	n:60000
KS ci ratio: 3.815522e-02	ci left: 1.467382e-01	ci right 1.524624e-01	k: 8975	n:60000
VEZT   60000 perm   14 sec   (4210 perm/sec)   p_kst 1.495833e-01   p_cons 1.450000e-02   p_joint 2.311667e-02

Joint ci ratio: 9.299085e-02	ci left: 2.360469e-02	ci right 2.592065e-02	k: 1732	n:70000
Cons ci ratio: 1.222068e-01	ci left: 1.359977e-02	ci right 1.538367e-02	k: 1013	n:70000
KS ci ratio: 3.526947e-02	ci left: 1.473480e-01	ci right 1.526524e-01	k: 10499	n:70000
VEZT   70000 perm   17 sec   (4114 perm/sec)   p_kst 1.499857e-01   p_cons 1.447143e-02   p_joint 2.474286e-02

Joint ci ratio: 8.434886e-02	ci left: 2.517756e-02	ci right 2.740697e-02	k: 2102	n:80000
Cons ci ratio: 1.147094e-01	ci left: 1.356157e-02	ci right 1.522392e-02	k: 1150	n:80000
KS ci ratio: 3.297057e-02	ci left: 1.476811e-01	ci right 1.526443e-01	k: 12012	n:80000
VEZT   80000 perm   20 sec   (4048 perm/sec)   p_kst 1.501500e-01   p_cons 1.437500e-02   p_joint 2.627500e-02

Joint ci ratio: 7.631956e-02	ci left: 2.738984e-02	ci right 2.957402e-02	k: 2562	n:90000
Cons ci ratio: 1.084843e-01	ci left: 1.352366e-02	ci right 1.508565e-02	k: 1286	n:90000
KS ci ratio: 3.101025e-02	ci left: 1.484347e-01	ci right 1.531212e-01	k: 13569	n:90000
VEZT   90000 perm   23 sec   (3978 perm/sec)   p_kst 1.507667e-01   p_cons 1.428889e-02   p_joint 2.846667e-02

Joint ci ratio: 7.284904e-02	ci left: 2.711391e-02	ci right 2.917358e-02	k: 2813	n:100000
Cons ci ratio: 1.032843e-01	ci left: 1.346606e-02	ci right 1.494231e-02	k: 1419	n:100000
KS ci ratio: 2.947162e-02	ci left: 1.481002e-01	ci right 1.525401e-01	k: 15031	n:100000
VEZT   100000 perm   26 sec   (3916 perm/sec)   p_kst 1.503100e-01   p_cons 1.419000e-02   p_joint 2.813000e-02

Joint ci ratio: 6.878049e-02	ci left: 2.769441e-02	ci right 2.967599e-02	k: 3154	n:110000
Cons ci ratio: 9.847773e-02	ci left: 1.350023e-02	ci right 1.490737e-02	k: 1561	n:110000
KS ci ratio: 2.806834e-02	ci left: 1.484911e-01	ci right 1.527273e-01	k: 16566	n:110000
VEZT   110000 perm   29 sec   (3851 perm/sec)   p_kst 1.506000e-01   p_cons 1.419091e-02   p_joint 2.867273e-02

Outputting figure to mutsig2_images.part000000000188/VEZT.7_2388_110000_0.1506_0.014191_0.028673.png
                gene_name: VEZT
               theta_stop: 0.098 
                    nperm: 110000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.014 
      ci_cons_bounds_left: 0.014 
     ci_cons_bounds_right: 0.015 
                  p_joint: 0.029 
     ci_joint_bounds_left: 0.028 
    ci_joint_bounds_right: 0.030 

Current progress: 22 percent done.
VAT1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.370683e-01	ci left: 7.039603e-02	ci right 8.085279e-02	k: 755	n:10000
Cons ci ratio: 9.901113e-02	ci left: 1.287509e-01	ci right 1.422622e-01	k: 1354	n:10000
KS ci ratio: 1.403068e-01	ci left: 6.729912e-02	ci right 7.755164e-02	k: 723	n:10000
VAT1L   10000 perm   2 sec   (5773 perm/sec)   p_kst 7.230000e-02   p_cons 1.354000e-01   p_joint 7.550000e-02

Joint ci ratio: 1.150598e-01	ci left: 5.168573e-02	ci right 5.804447e-02	k: 1096	n:20000
Cons ci ratio: 7.132741e-02	ci left: 1.265005e-01	ci right 1.359070e-01	k: 2623	n:20000
KS ci ratio: 9.921401e-02	ci left: 6.879694e-02	ci right 7.602796e-02	k: 1447	n:20000
VAT1L   20000 perm   4 sec   (5156 perm/sec)   p_kst 7.235000e-02   p_cons 1.311500e-01   p_joint 5.480000e-02

Joint ci ratio: 7.654043e-02	ci left: 7.731441e-02	ci right 8.350047e-02	k: 2411	n:30000
Cons ci ratio: 5.825597e-02	ci left: 1.273000e-01	ci right 1.349716e-01	k: 3933	n:30000
KS ci ratio: 8.174109e-02	ci left: 6.828229e-02	ci right 7.413441e-02	k: 2135	n:30000
VAT1L   30000 perm   6 sec   (4920 perm/sec)   p_kst 7.116667e-02   p_cons 1.311000e-01   p_joint 8.036667e-02

Outputting figure to mutsig2_images.part000000000188/VAT1L.6_1296_30000_0.071167_0.1311_0.080367.png
                gene_name: VAT1L
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.071 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.074 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.080 
     ci_joint_bounds_left: 0.077 
    ci_joint_bounds_right: 0.084 

Current progress: 24 percent done.
VEGFC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.693762e-02	ci left: 4.011345e-01	ci right 4.205174e-01	k: 4108	n:10000
Cons ci ratio: 6.616595e-02	ci left: 2.511271e-01	ci right 2.684130e-01	k: 2597	n:10000
KS ci ratio: 5.131657e-02	ci left: 3.589352e-01	ci right 3.779415e-01	k: 3684	n:10000
VEGFC   10000 perm   2 sec   (5891 perm/sec)   p_kst 3.684000e-01   p_cons 2.597000e-01   p_joint 4.108000e-01

Outputting figure to mutsig2_images.part000000000188/VEGFC.6_1291_10000_0.3684_0.2597_0.4108.png
                gene_name: VEGFC
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 26 percent done.
USP7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.527199e-02	ci left: 4.186732e-01	ci right 4.381685e-01	k: 4284	n:10000
Cons ci ratio: 1.129456e-01	ci left: 1.013965e-01	ci right 1.136332e-01	k: 1074	n:10000
KS ci ratio: 5.018909e-02	ci left: 3.692789e-01	ci right 3.883917e-01	k: 3788	n:10000
USP7   10000 perm   2 sec   (5203 perm/sec)   p_kst 3.788000e-01   p_cons 1.074000e-01   p_joint 4.284000e-01

Joint ci ratio: 4.450356e-02	ci left: 2.732385e-01	ci right 2.857257e-01	k: 5589	n:20000
Cons ci ratio: 7.930929e-02	ci left: 1.045165e-01	ci right 1.131975e-01	k: 2176	n:20000
KS ci ratio: 3.511110e-02	ci left: 3.771522e-01	ci right 3.906816e-01	k: 7678	n:20000
USP7   20000 perm   4 sec   (4643 perm/sec)   p_kst 3.839000e-01   p_cons 1.088000e-01   p_joint 2.794500e-01

Outputting figure to mutsig2_images.part000000000188/USP7.5_3433_20000_0.3839_0.1088_0.27945.png
                gene_name: USP7
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 28 percent done.
VCAM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.510623e-02	ci left: 3.266419e-01	ci right 3.452538e-01	k: 3359	n:10000
KS ci ratio: 8.154618e-03	ci left: 9.545097e-01	ci right 9.624204e-01	k: 9586	n:10000
VCAM1   10000 perm   2 sec   (5552 perm/sec)   p_kst 9.586000e-01   p_cons 3.359000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000188/VCAM1.5_2256_10000_0.9586_0.3359_1.png
                gene_name: VCAM1
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 30 percent done.
USP47
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.141993e-01	ci left: 9.934967e-02	ci right 1.114813e-01	k: 1053	n:10000
Cons ci ratio: 1.456751e-02	ci left: 8.721407e-01	ci right 8.850379e-01	k: 8787	n:10000
KS ci ratio: 1.467453e-01	ci left: 6.169346e-02	ci right 7.156083e-02	k: 665	n:10000
USP47   10000 perm   2 sec   (5163 perm/sec)   p_kst 6.650000e-02   p_cons 8.787000e-01   p_joint 1.053000e-01

Joint ci ratio: 6.950910e-02	ci left: 1.324104e-01	ci right 1.419953e-01	k: 2743	n:20000
Cons ci ratio: 1.037686e-02	ci left: 8.724699e-01	ci right 8.816202e-01	k: 17542	n:20000
KS ci ratio: 1.073513e-01	ci left: 5.913530e-02	ci right 6.589257e-02	k: 1249	n:20000
USP47   20000 perm   4 sec   (4630 perm/sec)   p_kst 6.245000e-02   p_cons 8.771000e-01   p_joint 1.371500e-01

Joint ci ratio: 5.765029e-02	ci left: 1.296703e-01	ci right 1.374009e-01	k: 4005	n:30000
Cons ci ratio: 8.507709e-03	ci left: 8.724200e-01	ci right 8.799070e-01	k: 26286	n:30000
KS ci ratio: 8.973847e-02	ci left: 5.711026e-02	ci right 6.250871e-02	k: 1793	n:30000
USP47   30000 perm   7 sec   (4432 perm/sec)   p_kst 5.976667e-02   p_cons 8.762000e-01   p_joint 1.335000e-01

Outputting figure to mutsig2_images.part000000000188/USP47.4_3972_30000_0.059767_0.8762_0.1335.png
                gene_name: USP47
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.060 
        ci_ks_bounds_left: 0.057 
       ci_ks_bounds_right: 0.063 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 33 percent done.
USP6NL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.204093e-02	ci left: 3.524727e-01	ci right 3.714078e-01	k: 3619	n:10000
Cons ci ratio: 5.439399e-03	ci left: 9.783435e-01	ci right 9.837711e-01	k: 9812	n:10000
KS ci ratio: 7.140060e-02	ci left: 2.232622e-01	ci right 2.398945e-01	k: 2315	n:10000
USP6NL   10000 perm   2 sec   (5447 perm/sec)   p_kst 2.315000e-01   p_cons 9.812000e-01   p_joint 3.619000e-01

Outputting figure to mutsig2_images.part000000000188/USP6NL.4_2602_10000_0.2315_0.9812_0.3619.png
                gene_name: USP6NL
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 35 percent done.
USP8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.063929e-02	ci left: 4.720631e-01	ci right 4.917475e-01	k: 4819	n:10000
Cons ci ratio: 2.983895e-02	ci left: 6.235661e-01	ci right 6.425563e-01	k: 6331	n:10000
KS ci ratio: 6.680851e-02	ci left: 2.474683e-01	ci right 2.646740e-01	k: 2560	n:10000
USP8   10000 perm   2 sec   (5169 perm/sec)   p_kst 2.560000e-01   p_cons 6.331000e-01   p_joint 4.819000e-01

Outputting figure to mutsig2_images.part000000000188/USP8.4_3433_10000_0.256_0.6331_0.4819.png
                gene_name: USP8
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 37 percent done.
UTP14A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.258621e-02	ci left: 9.007276e-01	ci right 9.122343e-01	k: 9066	n:10000
KS ci ratio: 8.387610e-03	ci left: 9.521083e-01	ci right 9.602233e-01	k: 9563	n:10000
UTP14A   10000 perm   2 sec   (5820 perm/sec)   p_kst 9.563000e-01   p_cons 9.066000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000188/UTP14A.4_2376_10000_0.9563_0.9066_1.png
                gene_name: UTP14A
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 39 percent done.
UXS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.896315e-01	ci left: 3.113627e-03	ci right 5.787748e-03	k: 43	n:10000
Cons ci ratio: 1.046878e+00	ci left: 6.923711e-04	ci right 2.222014e-03	k: 13	n:10000
KS ci ratio: 1.961298e-02	ci left: 7.918204e-01	ci right 8.076046e-01	k: 7998	n:10000
UXS1   10000 perm   2 sec   (6240 perm/sec)   p_kst 7.998000e-01   p_cons 1.300000e-03   p_joint 4.300000e-03

Joint ci ratio: 2.205424e-01	ci left: 1.383370e-02	ci right 1.730922e-02	k: 310	n:20000
Cons ci ratio: 7.034894e-01	ci left: 1.012265e-03	ci right 2.140657e-03	k: 30	n:20000
KS ci ratio: 1.385306e-02	ci left: 7.945395e-01	ci right 8.056731e-01	k: 16003	n:20000
UXS1   20000 perm   4 sec   (5549 perm/sec)   p_kst 8.001500e-01   p_cons 1.500000e-03   p_joint 1.550000e-02

Joint ci ratio: 1.759980e-01	ci left: 1.483366e-02	ci right 1.772779e-02	k: 487	n:30000
Cons ci ratio: 5.713332e-01	ci left: 1.122805e-03	ci right 2.044728e-03	k: 46	n:30000
KS ci ratio: 1.137628e-02	ci left: 7.937138e-01	ci right 8.028283e-01	k: 23949	n:30000
UXS1   30000 perm   6 sec   (5283 perm/sec)   p_kst 7.983000e-01   p_cons 1.533333e-03   p_joint 1.623333e-02

Joint ci ratio: 1.138175e-01	ci left: 2.715851e-02	ci right 3.046037e-02	k: 1151	n:40000
Cons ci ratio: 4.934784e-01	ci left: 1.188576e-03	ci right 1.986596e-03	k: 62	n:40000
KS ci ratio: 9.857475e-03	ci left: 7.941573e-01	ci right 8.020494e-01	k: 31925	n:40000
UXS1   40000 perm   8 sec   (5106 perm/sec)   p_kst 7.981250e-01   p_cons 1.550000e-03   p_joint 2.877500e-02

Joint ci ratio: 1.249644e-01	ci left: 1.809269e-02	ci right 2.052358e-02	k: 964	n:50000
Cons ci ratio: 4.325322e-01	ci left: 1.286716e-03	ci right 2.013116e-03	k: 81	n:50000
KS ci ratio: 8.868320e-03	ci left: 7.926823e-01	ci right 7.997633e-01	k: 39812	n:50000
UXS1   50000 perm   10 sec   (4961 perm/sec)   p_kst 7.962400e-01   p_cons 1.620000e-03   p_joint 1.928000e-02

Joint ci ratio: 1.025651e-01	ci left: 2.254636e-02	ci right 2.500000e-02	k: 1425	n:60000
Cons ci ratio: 4.106125e-01	ci left: 1.206344e-03	ci right 1.843438e-03	k: 90	n:60000
KS ci ratio: 8.130286e-03	ci left: 7.915963e-01	ci right 7.980751e-01	k: 47691	n:60000
UXS1   60000 perm   12 sec   (4839 perm/sec)   p_kst 7.948500e-01   p_cons 1.500000e-03   p_joint 2.375000e-02

Joint ci ratio: 1.022686e-01	ci left: 1.950482e-02	ci right 2.162090e-02	k: 1438	n:70000
Cons ci ratio: 3.878522e-01	ci left: 1.175380e-03	ci right 1.752930e-03	k: 101	n:70000
KS ci ratio: 7.519428e-03	ci left: 7.921768e-01	ci right 7.981702e-01	k: 55663	n:70000
UXS1   70000 perm   15 sec   (4731 perm/sec)   p_kst 7.951857e-01   p_cons 1.442857e-03   p_joint 2.054286e-02

Joint ci ratio: 1.041483e-01	ci left: 1.649302e-02	ci right 1.831721e-02	k: 1391	n:80000
Cons ci ratio: 3.605968e-01	ci left: 1.209673e-03	ci right 1.752513e-03	k: 117	n:80000
KS ci ratio: 7.019161e-03	ci left: 7.930525e-01	ci right 7.986511e-01	k: 63669	n:80000
UXS1   80000 perm   17 sec   (4634 perm/sec)   p_kst 7.958625e-01   p_cons 1.462500e-03   p_joint 1.738750e-02

Joint ci ratio: 8.346492e-02	ci left: 2.292283e-02	ci right 2.493024e-02	k: 2152	n:90000
Cons ci ratio: 3.396540e-01	ci left: 1.227288e-03	ci right 1.739042e-03	k: 132	n:90000
KS ci ratio: 6.600212e-03	ci left: 7.940779e-01	ci right 7.993474e-01	k: 71705	n:90000
UXS1   90000 perm   20 sec   (4534 perm/sec)   p_kst 7.967222e-01   p_cons 1.466667e-03   p_joint 2.391111e-02

Joint ci ratio: 7.975100e-02	ci left: 2.264838e-02	ci right 2.453939e-02	k: 2358	n:100000
Cons ci ratio: 3.198249e-01	ci left: 1.260502e-03	ci right 1.749145e-03	k: 149	n:100000
KS ci ratio: 6.275660e-03	ci left: 7.934788e-01	ci right 7.984840e-01	k: 79599	n:100000
UXS1   100000 perm   23 sec   (4443 perm/sec)   p_kst 7.959900e-01   p_cons 1.490000e-03   p_joint 2.358000e-02

Joint ci ratio: 8.809484e-02	ci left: 1.690229e-02	ci right 1.846875e-02	k: 1944	n:110000
Cons ci ratio: 3.058709e-01	ci left: 1.263196e-03	ci right 1.727361e-03	k: 163	n:110000
KS ci ratio: 5.981243e-03	ci left: 7.937250e-01	ci right 7.984957e-01	k: 87573	n:110000
UXS1   110000 perm   25 sec   (4363 perm/sec)   p_kst 7.961182e-01   p_cons 1.481818e-03   p_joint 1.767273e-02

Joint ci ratio: 9.008695e-02	ci left: 1.483308e-02	ci right 1.624048e-02	k: 1863	n:120000
Cons ci ratio: 2.919591e-01	ci left: 1.281272e-03	ci right 1.726711e-03	k: 179	n:120000
KS ci ratio: 5.734567e-03	ci left: 7.933740e-01	ci right 7.979450e-01	k: 95480	n:120000
UXS1   120000 perm   28 sec   (4279 perm/sec)   p_kst 7.956667e-01   p_cons 1.491667e-03   p_joint 1.552500e-02

Joint ci ratio: 8.604202e-02	ci left: 1.503875e-02	ci right 1.639837e-02	k: 2042	n:130000
Cons ci ratio: 2.783690e-01	ci left: 1.311280e-03	ci right 1.742216e-03	k: 197	n:130000
KS ci ratio: 5.502771e-03	ci left: 7.938685e-01	ci right 7.982567e-01	k: 103489	n:130000
UXS1   130000 perm   31 sec   (4209 perm/sec)   p_kst 7.960692e-01   p_cons 1.515385e-03   p_joint 1.570769e-02

Joint ci ratio: 8.272433e-02	ci left: 1.513227e-02	ci right 1.644504e-02	k: 2209	n:140000
Cons ci ratio: 2.677598e-01	ci left: 1.324082e-03	ci right 1.739859e-03	k: 213	n:140000
KS ci ratio: 5.299183e-03	ci left: 7.941591e-01	ci right 7.983858e-01	k: 111479	n:140000
UXS1   140000 perm   34 sec   (4133 perm/sec)   p_kst 7.962786e-01   p_cons 1.521429e-03   p_joint 1.577857e-02

Joint ci ratio: 7.983127e-02	ci left: 1.518805e-02	ci right 1.645744e-02	k: 2372	n:150000
Cons ci ratio: 2.571607e-01	ci left: 1.347920e-03	ci right 1.751740e-03	k: 231	n:150000
KS ci ratio: 5.128309e-03	ci left: 7.936707e-01	ci right 7.977579e-01	k: 119358	n:150000
UXS1   150000 perm   37 sec   (4068 perm/sec)   p_kst 7.957200e-01   p_cons 1.540000e-03   p_joint 1.581333e-02

Joint ci ratio: 7.926328e-02	ci left: 1.445910e-02	ci right 1.565856e-02	k: 2408	n:160000
Cons ci ratio: 2.502470e-01	ci left: 1.339759e-03	ci right 1.728662e-03	k: 244	n:160000
KS ci ratio: 4.968345e-03	ci left: 7.935466e-01	ci right 7.975052e-01	k: 127285	n:160000
UXS1   160000 perm   40 sec   (3983 perm/sec)   p_kst 7.955313e-01   p_cons 1.525000e-03   p_joint 1.505000e-02

Joint ci ratio: 7.497996e-02	ci left: 1.522987e-02	ci right 1.642202e-02	k: 2689	n:170000
Cons ci ratio: 2.429214e-01	ci left: 1.343734e-03	ci right 1.720652e-03	k: 259	n:170000
KS ci ratio: 4.821598e-03	ci left: 7.934980e-01	ci right 7.973390e-01	k: 135222	n:170000
UXS1   170000 perm   43 sec   (3920 perm/sec)   p_kst 7.954235e-01   p_cons 1.523529e-03   p_joint 1.581765e-02

Joint ci ratio: 7.272791e-02	ci left: 1.530533e-02	ci right 1.646589e-02	k: 2858	n:180000
Cons ci ratio: 2.366349e-01	ci left: 1.342188e-03	ci right 1.707502e-03	k: 273	n:180000
KS ci ratio: 4.691288e-03	ci left: 7.931665e-01	ci right 7.969017e-01	k: 143107	n:180000
UXS1   180000 perm   47 sec   (3857 perm/sec)   p_kst 7.950389e-01   p_cons 1.516667e-03   p_joint 1.587778e-02

Joint ci ratio: 7.089366e-02	ci left: 1.527508e-02	ci right 1.640292e-02	k: 3008	n:190000
Cons ci ratio: 2.280534e-01	ci left: 1.375644e-03	ci right 1.734576e-03	k: 294	n:190000
KS ci ratio: 4.568036e-03	ci left: 7.930826e-01	ci right 7.967189e-01	k: 151032	n:190000
UXS1   190000 perm   50 sec   (3798 perm/sec)   p_kst 7.949053e-01   p_cons 1.547368e-03   p_joint 1.583158e-02

Joint ci ratio: 6.913597e-02	ci left: 1.527275e-02	ci right 1.637134e-02	k: 3163	n:200000
Cons ci ratio: 2.224679e-01	ci left: 1.377630e-03	ci right 1.727072e-03	k: 309	n:200000
KS ci ratio: 4.451350e-03	ci left: 7.932039e-01	ci right 7.967475e-01	k: 158996	n:200000
UXS1   200000 perm   53 sec   (3743 perm/sec)   p_kst 7.949800e-01   p_cons 1.545000e-03   p_joint 1.581500e-02

Joint ci ratio: 6.750284e-02	ci left: 1.527096e-02	ci right 1.634246e-02	k: 3318	n:210000
Cons ci ratio: 2.176092e-01	ci left: 1.375022e-03	ci right 1.715166e-03	k: 323	n:210000
KS ci ratio: 4.345329e-03	ci left: 7.931523e-01	ci right 7.966110e-01	k: 166926	n:210000
UXS1   210000 perm   57 sec   (3688 perm/sec)   p_kst 7.948857e-01   p_cons 1.538095e-03   p_joint 1.580000e-02

Joint ci ratio: 6.569263e-02	ci left: 1.540377e-02	ci right 1.645450e-02	k: 3503	n:220000
Cons ci ratio: 2.114946e-01	ci left: 1.394246e-03	ci right 1.728198e-03	k: 342	n:220000
KS ci ratio: 4.250740e-03	ci left: 7.927826e-01	ci right 7.961642e-01	k: 174785	n:220000
UXS1   220000 perm   61 sec   (3635 perm/sec)   p_kst 7.944773e-01   p_cons 1.554545e-03   p_joint 1.592273e-02

Joint ci ratio: 6.427785e-02	ci left: 1.540128e-02	ci right 1.642837e-02	k: 3659	n:230000
Cons ci ratio: 2.039028e-01	ci left: 1.440796e-03	ci right 1.771968e-03	k: 368	n:230000
KS ci ratio: 4.158289e-03	ci left: 7.927425e-01	ci right 7.960501e-01	k: 182712	n:230000
UXS1   230000 perm   64 sec   (3586 perm/sec)   p_kst 7.944000e-01   p_cons 1.600000e-03   p_joint 1.590870e-02

Joint ci ratio: 6.455973e-02	ci left: 1.464049e-02	ci right 1.562128e-02	k: 3630	n:240000
Cons ci ratio: 1.983352e-01	ci left: 1.463858e-03	ci right 1.790034e-03	k: 389	n:240000
KS ci ratio: 4.070372e-03	ci left: 7.928068e-01	ci right 7.960445e-01	k: 190663	n:240000
UXS1   240000 perm   68 sec   (3535 perm/sec)   p_kst 7.944292e-01   p_cons 1.620833e-03   p_joint 1.512500e-02

Joint ci ratio: 6.156877e-02	ci left: 1.546449e-02	ci right 1.645078e-02	k: 3988	n:250000
Cons ci ratio: 1.946281e-01	ci left: 1.462353e-03	ci right 1.781380e-03	k: 404	n:250000
KS ci ratio: 3.985853e-03	ci left: 7.930270e-01	ci right 7.961982e-01	k: 198654	n:250000
UXS1   250000 perm   72 sec   (3487 perm/sec)   p_kst 7.946160e-01   p_cons 1.616000e-03   p_joint 1.595200e-02

Joint ci ratio: 6.190393e-02	ci left: 1.471806e-02	ci right 1.566203e-02	k: 3948	n:260000
Cons ci ratio: 1.904415e-01	ci left: 1.472003e-03	ci right 1.785429e-03	k: 422	n:260000
KS ci ratio: 3.909148e-03	ci left: 7.929995e-01	ci right 7.961093e-01	k: 206585	n:260000
UXS1   260000 perm   76 sec   (3440 perm/sec)   p_kst 7.945577e-01   p_cons 1.623077e-03   p_joint 1.518462e-02

Joint ci ratio: 6.594374e-02	ci left: 1.249232e-02	ci right 1.334782e-02	k: 3487	n:270000
Cons ci ratio: 1.875820e-01	ci left: 1.463353e-03	ci right 1.769726e-03	k: 435	n:270000
KS ci ratio: 3.835663e-03	ci left: 7.930637e-01	ci right 7.961151e-01	k: 214540	n:270000
UXS1   270000 perm   80 sec   (3393 perm/sec)   p_kst 7.945926e-01   p_cons 1.611111e-03   p_joint 1.291481e-02

Joint ci ratio: 5.826775e-02	ci left: 1.544342e-02	ci right 1.637378e-02	k: 4453	n:280000
Cons ci ratio: 1.852613e-01	ci left: 1.448542e-03	ci right 1.747640e-03	k: 446	n:280000
KS ci ratio: 3.765719e-03	ci left: 7.931632e-01	ci right 7.961592e-01	k: 222506	n:280000
UXS1   280000 perm   84 sec   (3350 perm/sec)   p_kst 7.946643e-01   p_cons 1.592857e-03   p_joint 1.590357e-02

Joint ci ratio: 5.723587e-02	ci left: 1.546145e-02	ci right 1.637585e-02	k: 4615	n:290000
Cons ci ratio: 1.816395e-01	ci left: 1.457812e-03	ci right 1.752292e-03	k: 464	n:290000
KS ci ratio: 3.700835e-03	ci left: 7.931353e-01	ci right 7.960795e-01	k: 230437	n:290000
UXS1   290000 perm   88 sec   (3307 perm/sec)   p_kst 7.946103e-01   p_cons 1.600000e-03   p_joint 1.591379e-02

Joint ci ratio: 4.608778e-02	ci left: 2.300371e-02	ci right 2.409218e-02	k: 7063	n:300000
Cons ci ratio: 1.780377e-01	ci left: 1.469701e-03	ci right 1.760062e-03	k: 483	n:300000
KS ci ratio: 3.638895e-03	ci left: 7.931365e-01	ci right 7.960312e-01	k: 238376	n:300000
UXS1   300000 perm   92 sec   (3266 perm/sec)   p_kst 7.945867e-01   p_cons 1.610000e-03   p_joint 2.354333e-02

Joint ci ratio: 4.335790e-02	ci left: 2.513303e-02	ci right 2.625006e-02	k: 7963	n:310000
Cons ci ratio: 1.753417e-01	ci left: 1.468539e-03	ci right 1.753811e-03	k: 498	n:310000
KS ci ratio: 3.579364e-03	ci left: 7.931929e-01	ci right 7.960403e-01	k: 246332	n:310000
UXS1   310000 perm   96 sec   (3224 perm/sec)   p_kst 7.946194e-01   p_cons 1.606452e-03   p_joint 2.568710e-02

Joint ci ratio: 4.467574e-02	ci left: 2.296862e-02	ci right 2.402128e-02	k: 7517	n:320000
Cons ci ratio: 1.736124e-01	ci left: 1.452531e-03	ci right 1.731619e-03	k: 508	n:320000
KS ci ratio: 3.523977e-03	ci left: 7.931240e-01	ci right 7.959269e-01	k: 254249	n:320000
UXS1   320000 perm   101 sec   (3183 perm/sec)   p_kst 7.945281e-01   p_cons 1.587500e-03   p_joint 2.349063e-02

Joint ci ratio: 4.398474e-02	ci left: 2.298583e-02	ci right 2.402256e-02	k: 7755	n:330000
Cons ci ratio: 1.717676e-01	ci left: 1.440407e-03	ci right 1.713920e-03	k: 519	n:330000
KS ci ratio: 3.471083e-03	ci left: 7.930596e-01	ci right 7.958201e-01	k: 262166	n:330000
UXS1   330000 perm   105 sec   (3144 perm/sec)   p_kst 7.944424e-01   p_cons 1.572727e-03   p_joint 2.350000e-02

Joint ci ratio: 4.325838e-02	ci left: 2.307198e-02	ci right 2.409499e-02	k: 8017	n:340000
Cons ci ratio: 1.698203e-01	ci left: 1.431827e-03	ci right 1.700313e-03	k: 531	n:340000
KS ci ratio: 3.418038e-03	ci left: 7.932351e-01	ci right 7.959540e-01	k: 270163	n:340000
UXS1   340000 perm   109 sec   (3105 perm/sec)   p_kst 7.945971e-01   p_cons 1.561765e-03   p_joint 2.357941e-02

Joint ci ratio: 4.261167e-02	ci left: 2.310527e-02	ci right 2.411407e-02	k: 8262	n:350000
Cons ci ratio: 1.676294e-01	ci left: 1.429228e-03	ci right 1.693420e-03	k: 545	n:350000
KS ci ratio: 3.368382e-03	ci left: 7.933007e-01	ci right 7.959801e-01	k: 278125	n:350000
UXS1   350000 perm   114 sec   (3068 perm/sec)   p_kst 7.946429e-01   p_cons 1.557143e-03   p_joint 2.360571e-02

Joint ci ratio: 4.200071e-02	ci left: 2.312857e-02	ci right 2.412356e-02	k: 8504	n:360000
Cons ci ratio: 1.658179e-01	ci left: 1.421469e-03	ci right 1.681104e-03	k: 557	n:360000
KS ci ratio: 3.320773e-03	ci left: 7.933684e-01	ci right 7.960101e-01	k: 286089	n:360000
UXS1   360000 perm   119 sec   (3031 perm/sec)   p_kst 7.946917e-01   p_cons 1.547222e-03   p_joint 2.362222e-02

Joint ci ratio: 5.043469e-02	ci left: 1.565953e-02	ci right 1.647240e-02	k: 5943	n:370000
Cons ci ratio: 1.642083e-01	ci left: 1.411553e-03	ci right 1.666626e-03	k: 568	n:370000
KS ci ratio: 3.276157e-03	ci left: 7.933298e-01	ci right 7.959358e-01	k: 294015	n:370000
UXS1   370000 perm   123 sec   (2997 perm/sec)   p_kst 7.946351e-01   p_cons 1.535135e-03   p_joint 1.606216e-02

Joint ci ratio: 4.090500e-02	ci left: 2.311447e-02	ci right 2.408229e-02	k: 8966	n:380000
Cons ci ratio: 1.619470e-01	ci left: 1.414794e-03	ci right 1.666589e-03	k: 584	n:380000
KS ci ratio: 3.232146e-03	ci left: 7.934095e-01	ci right 7.959807e-01	k: 301985	n:380000
UXS1   380000 perm   128 sec   (2964 perm/sec)   p_kst 7.946974e-01   p_cons 1.536842e-03   p_joint 2.359474e-02

Joint ci ratio: 4.042212e-02	ci left: 2.306999e-02	ci right 2.402429e-02	k: 9182	n:390000
Cons ci ratio: 1.601776e-01	ci left: 1.410507e-03	ci right 1.658532e-03	k: 597	n:390000
KS ci ratio: 3.191893e-03	ci left: 7.932772e-01	ci right 7.958158e-01	k: 309874	n:390000
UXS1   390000 perm   133 sec   (2931 perm/sec)   p_kst 7.945487e-01   p_cons 1.530769e-03   p_joint 2.354359e-02

Joint ci ratio: 3.988430e-02	ci left: 2.310950e-02	ci right 2.405242e-02	k: 9431	n:400000
Cons ci ratio: 1.579479e-01	ci left: 1.416053e-03	ci right 1.661259e-03	k: 614	n:400000
KS ci ratio: 3.152115e-03	ci left: 7.932544e-01	ci right 7.957613e-01	k: 317804	n:400000
UXS1   400000 perm   138 sec   (2898 perm/sec)   p_kst 7.945100e-01   p_cons 1.535000e-03   p_joint 2.357750e-02

Joint ci ratio: 3.943838e-02	ci left: 2.306503e-02	ci right 2.399538e-02	k: 9646	n:410000
Cons ci ratio: 1.563050e-01	ci left: 1.411975e-03	ci right 1.653694e-03	k: 627	n:410000
KS ci ratio: 3.111765e-03	ci left: 7.934457e-01	ci right 7.959209e-01	k: 325821	n:410000
UXS1   410000 perm   143 sec   (2860 perm/sec)   p_kst 7.946854e-01   p_cons 1.529268e-03   p_joint 2.352683e-02

Joint ci ratio: 3.893840e-02	ci left: 2.310292e-02	ci right 2.402272e-02	k: 9895	n:420000
Cons ci ratio: 1.545916e-01	ci left: 1.410393e-03	ci right 1.648949e-03	k: 641	n:420000
KS ci ratio: 3.075032e-03	ci left: 7.934036e-01	ci right 7.958495e-01	k: 333744	n:420000
UXS1   420000 perm   149 sec   (2821 perm/sec)   p_kst 7.946286e-01   p_cons 1.526190e-03   p_joint 2.355952e-02

Joint ci ratio: 4.669084e-02	ci left: 1.575120e-02	ci right 1.650650e-02	k: 6934	n:430000
Cons ci ratio: 1.532848e-01	ci left: 1.402189e-03	ci right 1.637168e-03	k: 652	n:430000
KS ci ratio: 3.039591e-03	ci left: 7.933614e-01	ci right 7.957788e-01	k: 341666	n:430000
UXS1   430000 perm   154 sec   (2791 perm/sec)   p_kst 7.945721e-01   p_cons 1.516279e-03   p_joint 1.612558e-02

Joint ci ratio: 4.776381e-02	ci left: 1.471702e-02	ci right 1.543939e-02	k: 6633	n:440000
Cons ci ratio: 1.515540e-01	ci left: 1.403112e-03	ci right 1.635350e-03	k: 667	n:440000
KS ci ratio: 3.005892e-03	ci left: 7.932620e-01	ci right 7.956523e-01	k: 349562	n:440000
UXS1   440000 perm   159 sec   (2762 perm/sec)   p_kst 7.944591e-01   p_cons 1.515909e-03   p_joint 1.507500e-02

Joint ci ratio: 4.726823e-02	ci left: 1.469738e-02	ci right 1.541110e-02	k: 6773	n:450000
Cons ci ratio: 1.498806e-01	ci left: 1.404008e-03	ci right 1.633598e-03	k: 682	n:450000
KS ci ratio: 2.972843e-03	ci left: 7.932162e-01	ci right 7.955800e-01	k: 357480	n:450000
UXS1   450000 perm   165 sec   (2733 perm/sec)   p_kst 7.944000e-01   p_cons 1.515556e-03   p_joint 1.505111e-02

Joint ci ratio: 4.675003e-02	ci left: 1.470228e-02	ci right 1.540820e-02	k: 6924	n:460000
Cons ci ratio: 1.481552e-01	ci left: 1.406972e-03	ci right 1.634164e-03	k: 698	n:460000
KS ci ratio: 2.939667e-03	ci left: 7.933054e-01	ci right 7.956430e-01	k: 365459	n:460000
UXS1   460000 perm   170 sec   (2704 perm/sec)   p_kst 7.944761e-01   p_cons 1.517391e-03   p_joint 1.505217e-02

Joint ci ratio: 4.622860e-02	ci left: 1.471963e-02	ci right 1.541828e-02	k: 7081	n:470000
Cons ci ratio: 1.467967e-01	ci left: 1.403675e-03	ci right 1.628074e-03	k: 711	n:470000
KS ci ratio: 2.907805e-03	ci left: 7.933654e-01	ci right 7.956778e-01	k: 373426	n:470000
UXS1   470000 perm   176 sec   (2676 perm/sec)   p_kst 7.945234e-01   p_cons 1.512766e-03   p_joint 1.506596e-02

Joint ci ratio: 5.098249e-02	ci left: 1.185638e-02	ci right 1.247870e-02	k: 5839	n:480000
Cons ci ratio: 1.454750e-01	ci left: 1.400525e-03	ci right 1.622229e-03	k: 724	n:480000
KS ci ratio: 2.876497e-03	ci left: 7.934752e-01	ci right 7.957629e-01	k: 381418	n:480000
UXS1   480000 perm   181 sec   (2649 perm/sec)   p_kst 7.946208e-01   p_cons 1.508333e-03   p_joint 1.216458e-02

Joint ci ratio: 5.047530e-02	ci left: 1.185217e-02	ci right 1.246790e-02	k: 5957	n:490000
Cons ci ratio: 1.435083e-01	ci left: 1.411284e-03	ci right 1.631413e-03	k: 744	n:490000
KS ci ratio: 2.848012e-03	ci left: 7.933700e-01	ci right 7.956347e-01	k: 389307	n:490000
UXS1   490000 perm   187 sec   (2623 perm/sec)   p_kst 7.945041e-01   p_cons 1.518367e-03   p_joint 1.215714e-02

Joint ci ratio: 4.992475e-02	ci left: 1.187582e-02	ci right 1.248585e-02	k: 6089	n:500000
Cons ci ratio: 1.418982e-01	ci left: 1.415844e-03	ci right 1.633997e-03	k: 761	n:500000
KS ci ratio: 2.818629e-03	ci left: 7.934695e-01	ci right 7.957111e-01	k: 397296	n:500000
UXS1   500000 perm   193 sec   (2595 perm/sec)   p_kst 7.945920e-01   p_cons 1.522000e-03   p_joint 1.217800e-02

Joint ci ratio: 4.942401e-02	ci left: 1.188308e-02	ci right 1.248719e-02	k: 6213	n:510000
Cons ci ratio: 1.401610e-01	ci left: 1.424024e-03	ci right 1.640526e-03	k: 780	n:510000
KS ci ratio: 2.790052e-03	ci left: 7.935750e-01	ci right 7.957942e-01	k: 405290	n:510000
UXS1   510000 perm   198 sec   (2570 perm/sec)   p_kst 7.946863e-01   p_cons 1.529412e-03   p_joint 1.218235e-02

Joint ci ratio: 4.386871e-02	ci left: 1.479121e-02	ci right 1.545652e-02	k: 7863	n:520000
Cons ci ratio: 1.382268e-01	ci left: 1.437474e-03	ci right 1.652757e-03	k: 802	n:520000
KS ci ratio: 2.761562e-03	ci left: 7.937672e-01	ci right 7.959641e-01	k: 413331	n:520000
UXS1   520000 perm   204 sec   (2545 perm/sec)   p_kst 7.948673e-01   p_cons 1.542308e-03   p_joint 1.512115e-02

Joint ci ratio: 4.346729e-02	ci left: 1.478459e-02	ci right 1.544337e-02	k: 8009	n:530000
Cons ci ratio: 1.368699e-01	ci left: 1.439501e-03	ci right 1.652799e-03	k: 818	n:530000
KS ci ratio: 2.735475e-03	ci left: 7.937669e-01	ci right 7.959431e-01	k: 421274	n:530000
UXS1   530000 perm   210 sec   (2522 perm/sec)   p_kst 7.948566e-01   p_cons 1.543396e-03   p_joint 1.511132e-02

Joint ci ratio: 4.797813e-02	ci left: 1.191805e-02	ci right 1.250572e-02	k: 6593	n:540000
Cons ci ratio: 1.358785e-01	ci left: 1.434308e-03	ci right 1.645172e-03	k: 830	n:540000
KS ci ratio: 2.710206e-03	ci left: 7.937556e-01	ci right 7.959116e-01	k: 429211	n:540000
UXS1   540000 perm   216 sec   (2497 perm/sec)   p_kst 7.948352e-01   p_cons 1.537037e-03   p_joint 1.220926e-02

Joint ci ratio: 4.751530e-02	ci left: 1.193310e-02	ci right 1.251569e-02	k: 6722	n:550000
Cons ci ratio: 1.346686e-01	ci left: 1.434579e-03	ci right 1.643455e-03	k: 845	n:550000
KS ci ratio: 2.686194e-03	ci left: 7.936756e-01	ci right 7.958122e-01	k: 437110	n:550000
UXS1   550000 perm   223 sec   (2472 perm/sec)   p_kst 7.947455e-01   p_cons 1.536364e-03   p_joint 1.222182e-02

Joint ci ratio: 4.050484e-02	ci left: 1.611670e-02	ci right 1.678475e-02	k: 9211	n:560000
Cons ci ratio: 1.333354e-01	ci left: 1.438301e-03	ci right 1.645482e-03	k: 862	n:560000
KS ci ratio: 2.662050e-03	ci left: 7.936916e-01	ci right 7.958090e-01	k: 445061	n:560000
UXS1   560000 perm   229 sec   (2448 perm/sec)   p_kst 7.947518e-01   p_cons 1.539286e-03   p_joint 1.644821e-02

Joint ci ratio: 4.659130e-02	ci left: 1.198078e-02	ci right 1.255402e-02	k: 6991	n:570000
Cons ci ratio: 1.318910e-01	ci left: 1.445296e-03	ci right 1.651052e-03	k: 881	n:570000
KS ci ratio: 2.638319e-03	ci left: 7.937352e-01	ci right 7.958338e-01	k: 453028	n:570000
UXS1   570000 perm   235 sec   (2423 perm/sec)   p_kst 7.947860e-01   p_cons 1.545614e-03   p_joint 1.226491e-02

Joint ci ratio: 4.620325e-02	ci left: 1.197530e-02	ci right 1.254338e-02	k: 7109	n:580000
Cons ci ratio: 1.307107e-01	ci left: 1.447057e-03	ci right 1.651077e-03	k: 897	n:580000
KS ci ratio: 2.615833e-03	ci left: 7.936996e-01	ci right 7.957802e-01	k: 460950	n:580000
UXS1   580000 perm   242 sec   (2401 perm/sec)   p_kst 7.947414e-01   p_cons 1.546552e-03   p_joint 1.225690e-02

Joint ci ratio: 4.579908e-02	ci left: 1.198344e-02	ci right 1.254679e-02	k: 7235	n:590000
Cons ci ratio: 1.290674e-01	ci left: 1.460248e-03	ci right 1.663341e-03	k: 920	n:590000
KS ci ratio: 2.593873e-03	ci left: 7.936704e-01	ci right 7.957334e-01	k: 468875	n:590000
UXS1   590000 perm   248 sec   (2378 perm/sec)   p_kst 7.947034e-01   p_cons 1.559322e-03   p_joint 1.226271e-02

Joint ci ratio: 3.905703e-02	ci left: 1.618908e-02	ci right 1.683560e-02	k: 9906	n:600000
Cons ci ratio: 1.274170e-01	ci left: 1.474628e-03	ci right 1.676900e-03	k: 944	n:600000
KS ci ratio: 2.571970e-03	ci left: 7.937041e-01	ci right 7.957497e-01	k: 476837	n:600000
UXS1   600000 perm   255 sec   (2356 perm/sec)   p_kst 7.947283e-01   p_cons 1.573333e-03   p_joint 1.651000e-02

Joint ci ratio: 3.875145e-02	ci left: 1.617855e-02	ci right 1.681949e-02	k: 10063	n:610000
Cons ci ratio: 1.266161e-01	ci left: 1.469500e-03	ci right 1.669707e-03	k: 956	n:610000
KS ci ratio: 2.550676e-03	ci left: 7.937285e-01	ci right 7.957572e-01	k: 484794	n:610000
UXS1   610000 perm   261 sec   (2334 perm/sec)   p_kst 7.947443e-01   p_cons 1.567213e-03   p_joint 1.649672e-02

Joint ci ratio: 3.844337e-02	ci left: 1.617638e-02	ci right 1.681202e-02	k: 10225	n:620000
Cons ci ratio: 1.251847e-01	ci left: 1.480165e-03	ci right 1.679377e-03	k: 978	n:620000
KS ci ratio: 2.530591e-03	ci left: 7.936633e-01	ci right 7.956759e-01	k: 492696	n:620000
UXS1   620000 perm   268 sec   (2313 perm/sec)   p_kst 7.946710e-01   p_cons 1.577419e-03   p_joint 1.649194e-02

Joint ci ratio: 3.813319e-02	ci left: 1.618215e-02	ci right 1.681278e-02	k: 10392	n:630000
Cons ci ratio: 1.241116e-01	ci left: 1.482814e-03	ci right 1.680545e-03	k: 995	n:630000
KS ci ratio: 2.510863e-03	ci left: 7.936146e-01	ci right 7.956113e-01	k: 500607	n:630000
UXS1   630000 perm   275 sec   (2293 perm/sec)   p_kst 7.946143e-01   p_cons 1.579365e-03   p_joint 1.649524e-02

Joint ci ratio: 4.277375e-02	ci left: 1.267598e-02	ci right 1.323156e-02	k: 8289	n:640000
Cons ci ratio: 1.230049e-01	ci left: 1.486901e-03	ci right 1.683280e-03	k: 1013	n:640000
KS ci ratio: 2.491183e-03	ci left: 7.936206e-01	ci right 7.956017e-01	k: 508552	n:640000
UXS1   640000 perm   282 sec   (2273 perm/sec)   p_kst 7.946125e-01   p_cons 1.582813e-03   p_joint 1.295156e-02

Joint ci ratio: 4.245758e-02	ci left: 1.266970e-02	ci right 1.322081e-02	k: 8413	n:650000
Cons ci ratio: 1.222242e-01	ci left: 1.483412e-03	ci right 1.677997e-03	k: 1026	n:650000
KS ci ratio: 2.471912e-03	ci left: 7.936327e-01	ci right 7.955985e-01	k: 516501	n:650000
UXS1   650000 perm   288 sec   (2254 perm/sec)   p_kst 7.946169e-01   p_cons 1.578462e-03   p_joint 1.294308e-02

Joint ci ratio: 4.213582e-02	ci left: 1.267112e-02	ci right 1.321801e-02	k: 8542	n:660000
Cons ci ratio: 1.216928e-01	ci left: 1.474156e-03	ci right 1.666625e-03	k: 1035	n:660000
KS ci ratio: 2.453264e-03	ci left: 7.936203e-01	ci right 7.955711e-01	k: 524434	n:660000
UXS1   660000 perm   295 sec   (2235 perm/sec)   p_kst 7.945970e-01   p_cons 1.568182e-03   p_joint 1.294242e-02

Joint ci ratio: 4.178711e-02	ci left: 1.269320e-02	ci right 1.323640e-02	k: 8685	n:670000
Cons ci ratio: 1.207638e-01	ci left: 1.475310e-03	ci right 1.666355e-03	k: 1051	n:670000
KS ci ratio: 2.434965e-03	ci left: 7.936172e-01	ci right 7.955534e-01	k: 532373	n:670000
UXS1   670000 perm   302 sec   (2215 perm/sec)   p_kst 7.945866e-01   p_cons 1.568657e-03   p_joint 1.296269e-02

Joint ci ratio: 4.147071e-02	ci left: 1.270009e-02	ci right 1.323937e-02	k: 8818	n:680000
Cons ci ratio: 1.200247e-01	ci left: 1.472156e-03	ci right 1.661543e-03	k: 1064	n:680000
KS ci ratio: 2.416187e-03	ci left: 7.937336e-01	ci right 7.956551e-01	k: 540393	n:680000
UXS1   680000 perm   310 sec   (2197 perm/sec)   p_kst 7.946956e-01   p_cons 1.564706e-03   p_joint 1.296765e-02

Joint ci ratio: 4.116605e-02	ci left: 1.270392e-02	ci right 1.323931e-02	k: 8949	n:690000
Cons ci ratio: 1.190779e-01	ci left: 1.474721e-03	ci right 1.662837e-03	k: 1081	n:690000
KS ci ratio: 2.398657e-03	ci left: 7.937348e-01	ci right 7.956424e-01	k: 548336	n:690000
UXS1   690000 perm   317 sec   (2177 perm/sec)   p_kst 7.946899e-01   p_cons 1.566667e-03   p_joint 1.296957e-02

Joint ci ratio: 4.190156e-02	ci left: 1.208976e-02	ci right 1.260858e-02	k: 8643	n:700000
Cons ci ratio: 1.183151e-01	ci left: 1.473060e-03	ci right 1.659675e-03	k: 1095	n:700000
KS ci ratio: 2.381534e-03	ci left: 7.937318e-01	ci right 7.956258e-01	k: 556276	n:700000
UXS1   700000 perm   324 sec   (2159 perm/sec)   p_kst 7.946800e-01   p_cons 1.564286e-03   p_joint 1.234714e-02

Joint ci ratio: 4.059868e-02	ci left: 1.269737e-02	ci right 1.322493e-02	k: 9201	n:710000
Cons ci ratio: 1.173552e-01	ci left: 1.476918e-03	ci right 1.662399e-03	k: 1113	n:710000
KS ci ratio: 2.364364e-03	ci left: 7.937854e-01	ci right 7.956658e-01	k: 564256	n:710000
UXS1   710000 perm   332 sec   (2141 perm/sec)   p_kst 7.947268e-01   p_cons 1.567606e-03   p_joint 1.295915e-02

Joint ci ratio: 3.825247e-01	ci left: 1.180231e-04	ci right 1.750159e-04	k: 104	n:720000
Cons ci ratio: 5.543521e-01	ci left: 5.034829e-05	ci right 8.997207e-05	k: 49	n:720000
KS ci ratio: 2.347900e-03	ci left: 7.937902e-01	ci right 7.956575e-01	k: 572202	n:720000
UXS1   720000 perm   339 sec   (2123 perm/sec)   p_kst 7.947250e-01   p_cons 6.805556e-05   p_joint 1.444444e-04

Joint ci ratio: 3.789327e-01	ci left: 1.188838e-04	ci right 1.756192e-04	k: 106	n:730000
Cons ci ratio: 5.543524e-01	ci left: 4.965858e-05	ci right 8.873959e-05	k: 49	n:730000
KS ci ratio: 2.331677e-03	ci left: 7.938086e-01	ci right 7.956630e-01	k: 580158	n:730000
UXS1   730000 perm   347 sec   (2104 perm/sec)   p_kst 7.947370e-01   p_cons 6.712329e-05   p_joint 1.452055e-04

Joint ci ratio: 3.737293e-01	ci left: 1.209479e-04	ci right 1.776817e-04	k: 109	n:740000
Cons ci ratio: 5.488905e-01	ci left: 5.015035e-05	ci right 8.907846e-05	k: 50	n:740000
KS ci ratio: 2.315336e-03	ci left: 7.938902e-01	ci right 7.957318e-01	k: 588161	n:740000
UXS1   740000 perm   355 sec   (2087 perm/sec)   p_kst 7.948122e-01   p_cons 6.756757e-05   p_joint 1.472973e-04

Joint ci ratio: 3.720422e-01	ci left: 1.205437e-04	ci right 1.767703e-04	k: 110	n:750000
Cons ci ratio: 5.435870e-01	ci left: 5.063087e-05	ci right 8.940648e-05	k: 51	n:750000
KS ci ratio: 2.300075e-03	ci left: 7.938642e-01	ci right 7.956935e-01	k: 596085	n:750000
UXS1   750000 perm   363 sec   (2068 perm/sec)   p_kst 7.947800e-01   p_cons 6.800000e-05   p_joint 1.466667e-04

Joint ci ratio: 3.671139e-01	ci left: 1.225384e-04	ci right 1.787567e-04	k: 113	n:760000
Cons ci ratio: 5.334251e-01	ci left: 5.223810e-05	ci right 9.121653e-05	k: 53	n:760000
KS ci ratio: 2.285020e-03	ci left: 7.938521e-01	ci right 7.956694e-01	k: 604019	n:760000
UXS1   760000 perm   370 sec   (2052 perm/sec)   p_kst 7.947618e-01   p_cons 6.973684e-05   p_joint 1.486842e-04

Joint ci ratio: 3.655143e-01	ci left: 1.221261e-04	ci right 1.778530e-04	k: 114	n:770000
Cons ci ratio: 5.334254e-01	ci left: 5.155968e-05	ci right 9.003191e-05	k: 53	n:770000
KS ci ratio: 2.269742e-03	ci left: 7.939144e-01	ci right 7.957197e-01	k: 612010	n:770000
UXS1   770000 perm   378 sec   (2035 perm/sec)   p_kst 7.948182e-01   p_cons 6.883117e-05   p_joint 1.480519e-04

Joint ci ratio: 3.348786e-01	ci left: 1.462897e-04	ci right 2.062439e-04	k: 136	n:780000
Cons ci ratio: 5.334256e-01	ci left: 5.089865e-05	ci right 8.887767e-05	k: 53	n:780000
KS ci ratio: 2.260420e-03	ci left: 7.931560e-01	ci right 7.949521e-01	k: 619363	n:780000
UXS1   780000 perm   387 sec   (2018 perm/sec)   p_kst 7.940551e-01   p_cons 6.794872e-05   p_joint 1.743590e-04

Joint ci ratio: 3.324606e-01	ci left: 1.467575e-04	ci right 2.063761e-04	k: 138	n:790000
Cons ci ratio: 5.285540e-01	ci left: 5.135036e-05	ci right 8.918678e-05	k: 54	n:790000
KS ci ratio: 2.246542e-03	ci left: 7.930925e-01	ci right 7.948775e-01	k: 627249	n:790000
UXS1   790000 perm   395 sec   (2002 perm/sec)   p_kst 7.939861e-01   p_cons 6.835443e-05   p_joint 1.746835e-04

Joint ci ratio: 3.312713e-01	ci left: 1.460689e-04	ci right 2.051502e-04	k: 139	n:800000
Cons ci ratio: 5.285542e-01	ci left: 5.070847e-05	ci right 8.807195e-05	k: 54	n:800000
KS ci ratio: 2.232430e-03	ci left: 7.931021e-01	ci right 7.948758e-01	k: 635192	n:800000
UXS1   800000 perm   403 sec   (1986 perm/sec)   p_kst 7.939900e-01   p_cons 6.750000e-05   p_joint 1.737500e-04

Joint ci ratio: 3.277777e-01	ci left: 1.476630e-04	ci right 2.066265e-04	k: 142	n:810000
Cons ci ratio: 5.285544e-01	ci left: 5.008244e-05	ci right 8.698466e-05	k: 54	n:810000
KS ci ratio: 2.218665e-03	ci left: 7.930990e-01	ci right 7.948618e-01	k: 643125	n:810000
UXS1   810000 perm   411 sec   (1971 perm/sec)   p_kst 7.939815e-01   p_cons 6.666667e-05   p_joint 1.753086e-04

Joint ci ratio: 3.243924e-01	ci left: 1.492213e-04	ci right 2.080636e-04	k: 145	n:820000
Cons ci ratio: 5.285546e-01	ci left: 4.947167e-05	ci right 8.592388e-05	k: 54	n:820000
KS ci ratio: 2.204978e-03	ci left: 7.931218e-01	ci right 7.948737e-01	k: 651079	n:820000
UXS1   820000 perm   419 sec   (1955 perm/sec)   p_kst 7.939988e-01   p_cons 6.585366e-05   p_joint 1.768293e-04

Joint ci ratio: 3.243928e-01	ci left: 1.474234e-04	ci right 2.055568e-04	k: 145	n:830000
Cons ci ratio: 5.285549e-01	ci left: 4.887562e-05	ci right 8.488866e-05	k: 54	n:830000
KS ci ratio: 2.191671e-03	ci left: 7.931247e-01	ci right 7.948660e-01	k: 659017	n:830000
UXS1   830000 perm   428 sec   (1940 perm/sec)   p_kst 7.939964e-01   p_cons 6.506024e-05   p_joint 1.746988e-04

Joint ci ratio: 3.221934e-01	ci left: 1.478561e-04	ci right 2.056832e-04	k: 147	n:840000
Cons ci ratio: 5.191988e-01	ci left: 5.035966e-05	ci right 8.657135e-05	k: 56	n:840000
KS ci ratio: 2.178729e-03	ci left: 7.931085e-01	ci right 7.948395e-01	k: 666939	n:840000
UXS1   840000 perm   436 sec   (1926 perm/sec)   p_kst 7.939750e-01   p_cons 6.666667e-05   p_joint 1.750000e-04

Joint ci ratio: 3.179254e-01	ci left: 1.504446e-04	ci right 2.083460e-04	k: 151	n:850000
Cons ci ratio: 5.147034e-01	ci left: 5.079008e-05	ci right 8.688162e-05	k: 57	n:850000
KS ci ratio: 2.165608e-03	ci left: 7.931540e-01	ci right 7.948746e-01	k: 674913	n:850000
UXS1   850000 perm   445 sec   (1911 perm/sec)   p_kst 7.940153e-01   p_cons 6.705882e-05   p_joint 1.776471e-04

Joint ci ratio: 3.179257e-01	ci left: 1.486952e-04	ci right 2.059234e-04	k: 151	n:860000
Cons ci ratio: 5.147036e-01	ci left: 5.019949e-05	ci right 8.587138e-05	k: 57	n:860000
KS ci ratio: 2.152606e-03	ci left: 7.932159e-01	ci right 7.949263e-01	k: 682902	n:860000
UXS1   860000 perm   453 sec   (1897 perm/sec)   p_kst 7.940721e-01   p_cons 6.627907e-05   p_joint 1.755814e-04

Joint ci ratio: 3.168852e-01	ci left: 1.480439e-04	ci right 2.047972e-04	k: 152	n:870000
Cons ci ratio: 5.147038e-01	ci left: 4.962248e-05	ci right 8.488436e-05	k: 57	n:870000
KS ci ratio: 2.139814e-03	ci left: 7.932799e-01	ci right 7.949803e-01	k: 690894	n:870000
UXS1   870000 perm   462 sec   (1882 perm/sec)   p_kst 7.941310e-01   p_cons 6.551724e-05   p_joint 1.747126e-04

Joint ci ratio: 3.148341e-01	ci left: 1.484542e-04	ci right 2.049222e-04	k: 154	n:880000
Cons ci ratio: 5.147040e-01	ci left: 4.905859e-05	ci right 8.391978e-05	k: 57	n:880000
KS ci ratio: 2.127549e-03	ci left: 7.932957e-01	ci right 7.949864e-01	k: 698845	n:880000
UXS1   880000 perm   471 sec   (1868 perm/sec)   p_kst 7.941420e-01   p_cons 6.477273e-05   p_joint 1.750000e-04

Joint ci ratio: 3.138235e-01	ci left: 1.478211e-04	ci right 2.038317e-04	k: 155	n:890000
Cons ci ratio: 5.103233e-01	ci left: 4.948556e-05	ci right 8.424465e-05	k: 58	n:890000
KS ci ratio: 2.115646e-03	ci left: 7.932877e-01	ci right 7.949688e-01	k: 706775	n:890000
UXS1   890000 perm   480 sec   (1855 perm/sec)   p_kst 7.941292e-01   p_cons 6.516854e-05   p_joint 1.741573e-04

Joint ci ratio: 3.118309e-01	ci left: 1.482265e-04	ci right 2.039630e-04	k: 157	n:900000
Cons ci ratio: 5.018873e-01	ci left: 5.087406e-05	ci right 8.581239e-05	k: 60	n:900000
KS ci ratio: 2.103890e-03	ci left: 7.932876e-01	ci right 7.949594e-01	k: 714712	n:900000
UXS1   900000 perm   489 sec   (1842 perm/sec)   p_kst 7.941244e-01   p_cons 6.666667e-05   p_joint 1.744444e-04

Joint ci ratio: 3.098758e-01	ci left: 1.486240e-04	ci right 2.040904e-04	k: 159	n:910000
Cons ci ratio: 5.018875e-01	ci left: 5.031500e-05	ci right 8.486941e-05	k: 60	n:910000
KS ci ratio: 2.091984e-03	ci left: 7.933415e-01	ci right 7.950039e-01	k: 722698	n:910000
UXS1   910000 perm   498 sec   (1829 perm/sec)   p_kst 7.941736e-01   p_cons 6.593407e-05   p_joint 1.747253e-04

Joint ci ratio: 3.089121e-01	ci left: 1.480111e-04	ci right 2.030431e-04	k: 160	n:920000
Cons ci ratio: 5.018877e-01	ci left: 4.976810e-05	ci right 8.394692e-05	k: 60	n:920000
KS ci ratio: 2.081010e-03	ci left: 7.932788e-01	ci right 7.949324e-01	k: 730578	n:920000
UXS1   920000 perm   506 sec   (1816 perm/sec)   p_kst 7.941065e-01   p_cons 6.521739e-05   p_joint 1.739130e-04

Joint ci ratio: 3.079573e-01	ci left: 1.474116e-04	ci right 2.020181e-04	k: 161	n:930000
Cons ci ratio: 5.018878e-01	ci left: 4.923295e-05	ci right 8.304428e-05	k: 60	n:930000
KS ci ratio: 2.069227e-03	ci left: 7.933726e-01	ci right 7.950170e-01	k: 738602	n:930000
UXS1   930000 perm   515 sec   (1804 perm/sec)   p_kst 7.941957e-01   p_cons 6.451613e-05   p_joint 1.731183e-04

Joint ci ratio: 3.051446e-01	ci left: 1.487895e-04	ci right 2.033051e-04	k: 164	n:940000
Cons ci ratio: 4.938568e-01	ci left: 5.056956e-05	ci right 8.455368e-05	k: 62	n:940000
KS ci ratio: 2.058345e-03	ci left: 7.933525e-01	ci right 7.949882e-01	k: 746521	n:940000
UXS1   940000 perm   525 sec   (1792 perm/sec)   p_kst 7.941713e-01   p_cons 6.595745e-05   p_joint 1.744681e-04

Joint ci ratio: 3.033119e-01	ci left: 1.491678e-04	ci right 2.034305e-04	k: 166	n:950000
Cons ci ratio: 4.861993e-01	ci left: 5.188227e-05	ci right 8.602717e-05	k: 64	n:950000
KS ci ratio: 2.047791e-03	ci left: 7.933076e-01	ci right 7.949348e-01	k: 754416	n:950000
UXS1   950000 perm   534 sec   (1780 perm/sec)   p_kst 7.941221e-01   p_cons 6.736842e-05   p_joint 1.747368e-04

Joint ci ratio: 3.015118e-01	ci left: 1.495393e-04	ci right 2.035524e-04	k: 168	n:960000
Cons ci ratio: 4.861994e-01	ci left: 5.134182e-05	ci right 8.513106e-05	k: 64	n:960000
KS ci ratio: 2.037060e-03	ci left: 7.933179e-01	ci right 7.949366e-01	k: 762363	n:960000
UXS1   960000 perm   543 sec   (1768 perm/sec)   p_kst 7.941281e-01   p_cons 6.666667e-05   p_joint 1.750000e-04

Joint ci ratio: 3.015120e-01	ci left: 1.479976e-04	ci right 2.014539e-04	k: 168	n:970000
Cons ci ratio: 4.861996e-01	ci left: 5.081252e-05	ci right 8.425343e-05	k: 64	n:970000
KS ci ratio: 2.026470e-03	ci left: 7.933321e-01	ci right 7.949424e-01	k: 770314	n:970000
UXS1   970000 perm   552 sec   (1756 perm/sec)   p_kst 7.941381e-01   p_cons 6.597938e-05   p_joint 1.731959e-04

Joint ci ratio: 3.006240e-01	ci left: 1.474308e-04	ci right 2.004955e-04	k: 169	n:980000
Cons ci ratio: 4.825022e-01	ci left: 5.118978e-05	ci right 8.453784e-05	k: 65	n:980000
KS ci ratio: 2.016032e-03	ci left: 7.933481e-01	ci right 7.949501e-01	k: 778267	n:980000
UXS1   980000 perm   562 sec   (1745 perm/sec)   p_kst 7.941500e-01   p_cons 6.632653e-05   p_joint 1.724490e-04

Joint ci ratio: 2.937899e-01	ci left: 1.534201e-04	ci right 2.071517e-04	k: 177	n:990000
Cons ci ratio: 4.652015e-01	ci left: 5.512003e-05	ci right 8.933330e-05	k: 70	n:990000
KS ci ratio: 2.006044e-03	ci left: 7.933163e-01	ci right 7.949103e-01	k: 786173	n:990000
UXS1   990000 perm   572 sec   (1732 perm/sec)   p_kst 7.941141e-01   p_cons 7.070707e-05   p_joint 1.787879e-04

Joint ci ratio: 2.937901e-01	ci left: 1.518859e-04	ci right 2.050802e-04	k: 177	n:1000000
Cons ci ratio: 4.652017e-01	ci left: 5.456883e-05	ci right 8.843997e-05	k: 70	n:1000000
KS ci ratio: 1.995867e-03	ci left: 7.933402e-01	ci right 7.949261e-01	k: 794134	n:1000000
UXS1   1000000 perm   581 sec   (1720 perm/sec)   p_kst 7.941340e-01   p_cons 7.000000e-05   p_joint 1.770000e-04

Joint ci ratio: 2.921534e-01	ci left: 1.522168e-04	ci right 2.051750e-04	k: 179	n:1010000
Cons ci ratio: 4.619597e-01	ci left: 5.490296e-05	ci right 8.866932e-05	k: 71	n:1010000
KS ci ratio: 1.986108e-03	ci left: 7.933200e-01	ci right 7.948981e-01	k: 802051	n:1010000
UXS1   1010000 perm   591 sec   (1709 perm/sec)   p_kst 7.941099e-01   p_cons 7.029703e-05   p_joint 1.772277e-04

Joint ci ratio: 2.905437e-01	ci left: 1.525419e-04	ci right 2.052671e-04	k: 181	n:1020000
Cons ci ratio: 4.587847e-01	ci left: 5.523134e-05	ci right 8.889339e-05	k: 72	n:1020000
KS ci ratio: 1.976124e-03	ci left: 7.933611e-01	ci right 7.949314e-01	k: 810030	n:1020000
UXS1   1020000 perm   601 sec   (1697 perm/sec)   p_kst 7.941471e-01   p_cons 7.058824e-05   p_joint 1.774510e-04

Joint ci ratio: 2.874023e-01	ci left: 1.546630e-04	ci right 2.074384e-04	k: 185	n:1030000
Cons ci ratio: 4.556742e-01	ci left: 5.555413e-05	ci right 8.911233e-05	k: 73	n:1030000
KS ci ratio: 1.966254e-03	ci left: 7.934072e-01	ci right 7.949698e-01	k: 818015	n:1030000
UXS1   1030000 perm   611 sec   (1686 perm/sec)   p_kst 7.941893e-01   p_cons 7.087379e-05   p_joint 1.796117e-04

Joint ci ratio: 2.874025e-01	ci left: 1.531759e-04	ci right 2.054438e-04	k: 185	n:1040000
Cons ci ratio: 4.556743e-01	ci left: 5.501996e-05	ci right 8.825549e-05	k: 73	n:1040000
KS ci ratio: 1.956719e-03	ci left: 7.934207e-01	ci right 7.949757e-01	k: 825967	n:1040000
UXS1   1040000 perm   621 sec   (1675 perm/sec)   p_kst 7.941990e-01   p_cons 7.019231e-05   p_joint 1.778846e-04

Joint ci ratio: 2.858697e-01	ci left: 1.534849e-04	ci right 2.055285e-04	k: 187	n:1050000
Cons ci ratio: 4.526262e-01	ci left: 5.533936e-05	ci right 8.847561e-05	k: 74	n:1050000
KS ci ratio: 1.946937e-03	ci left: 7.934989e-01	ci right 7.950462e-01	k: 833987	n:1050000
UXS1   1050000 perm   631 sec   (1664 perm/sec)   p_kst 7.942733e-01   p_cons 7.047619e-05   p_joint 1.780952e-04

Joint ci ratio: 2.851125e-01	ci left: 1.529128e-04	ci right 2.046004e-04	k: 188	n:1060000
Cons ci ratio: 4.526264e-01	ci left: 5.481729e-05	ci right 8.764094e-05	k: 74	n:1060000
KS ci ratio: 1.937635e-03	ci left: 7.935188e-01	ci right 7.950588e-01	k: 841947	n:1060000
UXS1   1060000 perm   641 sec   (1653 perm/sec)   p_kst 7.942896e-01   p_cons 6.981132e-05   p_joint 1.773585e-04

Joint ci ratio: 2.843613e-01	ci left: 1.523515e-04	ci right 2.036894e-04	k: 189	n:1070000
Cons ci ratio: 4.526265e-01	ci left: 5.430497e-05	ci right 8.682187e-05	k: 74	n:1070000
KS ci ratio: 1.928790e-03	ci left: 7.934832e-01	ci right 7.950161e-01	k: 849848	n:1070000
UXS1   1070000 perm   651 sec   (1643 perm/sec)   p_kst 7.942505e-01   p_cons 6.915888e-05   p_joint 1.766355e-04

Joint ci ratio: 2.814142e-01	ci left: 1.543819e-04	ci right 2.057691e-04	k: 193	n:1080000
Cons ci ratio: 4.496388e-01	ci left: 5.462284e-05	ci right 8.704845e-05	k: 75	n:1080000
KS ci ratio: 1.919864e-03	ci left: 7.934826e-01	ci right 7.950084e-01	k: 857786	n:1080000
UXS1   1080000 perm   662 sec   (1632 perm/sec)   p_kst 7.942463e-01   p_cons 6.944444e-05   p_joint 1.787037e-04

Joint ci ratio: 2.806918e-01	ci left: 1.538183e-04	ci right 2.048632e-04	k: 194	n:1090000
Cons ci ratio: 4.496390e-01	ci left: 5.412171e-05	ci right 8.624984e-05	k: 75	n:1090000
KS ci ratio: 1.910750e-03	ci left: 7.935353e-01	ci right 7.950539e-01	k: 865782	n:1090000
UXS1   1090000 perm   672 sec   (1622 perm/sec)   p_kst 7.942954e-01   p_cons 6.880734e-05   p_joint 1.779817e-04

Joint ci ratio: 2.799749e-01	ci left: 1.532651e-04	ci right 2.039737e-04	k: 195	n:1100000
Cons ci ratio: 4.496391e-01	ci left: 5.362969e-05	ci right 8.546576e-05	k: 75	n:1100000
KS ci ratio: 1.902045e-03	ci left: 7.935388e-01	ci right 7.950505e-01	k: 873725	n:1100000
UXS1   1100000 perm   682 sec   (1612 perm/sec)   p_kst 7.942955e-01   p_cons 6.818182e-05   p_joint 1.772727e-04

Joint ci ratio: 2.785573e-01	ci left: 1.535600e-04	ci right 2.040637e-04	k: 197	n:1110000
Cons ci ratio: 4.496392e-01	ci left: 5.314654e-05	ci right 8.469581e-05	k: 75	n:1110000
KS ci ratio: 1.892982e-03	ci left: 7.936244e-01	ci right 7.951290e-01	k: 881759	n:1110000
UXS1   1110000 perm   693 sec   (1602 perm/sec)   p_kst 7.943775e-01   p_cons 6.756757e-05   p_joint 1.774775e-04

Joint ci ratio: 2.757852e-01	ci left: 1.555122e-04	ci right 2.060607e-04	k: 201	n:1120000
Cons ci ratio: 4.438369e-01	ci left: 5.425679e-05	ci right 8.592497e-05	k: 77	n:1120000
KS ci ratio: 1.884414e-03	ci left: 7.936450e-01	ci right 7.951428e-01	k: 889722	n:1120000
UXS1   1120000 perm   703 sec   (1592 perm/sec)   p_kst 7.943946e-01   p_cons 6.875000e-05   p_joint 1.794643e-04

Joint ci ratio: 2.744300e-01	ci left: 1.557838e-04	ci right 2.061288e-04	k: 203	n:1130000
Cons ci ratio: 4.410188e-01	ci left: 5.456299e-05	ci right 8.614752e-05	k: 78	n:1130000
KS ci ratio: 1.876102e-03	ci left: 7.936404e-01	ci right 7.951316e-01	k: 897657	n:1130000
UXS1   1130000 perm   714 sec   (1583 perm/sec)   p_kst 7.943867e-01   p_cons 6.902655e-05   p_joint 1.796460e-04

Joint ci ratio: 2.737599e-01	ci left: 1.552342e-04	ci right 2.052580e-04	k: 204	n:1140000
Cons ci ratio: 4.410190e-01	ci left: 5.408437e-05	ci right 8.539185e-05	k: 78	n:1140000
KS ci ratio: 1.867900e-03	ci left: 7.936359e-01	ci right 7.951205e-01	k: 905592	n:1140000
UXS1   1140000 perm   725 sec   (1573 perm/sec)   p_kst 7.943789e-01   p_cons 6.842105e-05   p_joint 1.789474e-04

Joint ci ratio: 2.724342e-01	ci left: 1.555044e-04	ci right 2.053311e-04	k: 206	n:1150000
Cons ci ratio: 4.410191e-01	ci left: 5.361406e-05	ci right 8.464931e-05	k: 78	n:1150000
KS ci ratio: 1.860037e-03	ci left: 7.935905e-01	ci right 7.950689e-01	k: 913480	n:1150000
UXS1   1150000 perm   735 sec   (1564 perm/sec)   p_kst 7.943304e-01   p_cons 6.782609e-05   p_joint 1.791304e-04

Joint ci ratio: 2.704811e-01	ci left: 1.565741e-04	ci right 2.063228e-04	k: 209	n:1160000
Cons ci ratio: 4.382540e-01	ci left: 5.391850e-05	ci right 8.487650e-05	k: 79	n:1160000
KS ci ratio: 1.851716e-03	ci left: 7.936444e-01	ci right 7.951162e-01	k: 921482	n:1160000
UXS1   1160000 perm   746 sec   (1555 perm/sec)   p_kst 7.943810e-01   p_cons 6.810345e-05   p_joint 1.801724e-04

Joint ci ratio: 2.698395e-01	ci left: 1.560326e-04	ci right 2.054718e-04	k: 210	n:1170000
Cons ci ratio: 4.355403e-01	ci left: 5.421833e-05	ci right 8.509922e-05	k: 80	n:1170000
KS ci ratio: 1.844079e-03	ci left: 7.935955e-01	ci right 7.950611e-01	k: 929365	n:1170000
UXS1   1170000 perm   757 sec   (1546 perm/sec)   p_kst 7.943291e-01   p_cons 6.837607e-05   p_joint 1.794872e-04

Joint ci ratio: 2.692024e-01	ci left: 1.555005e-04	ci right 2.046351e-04	k: 211	n:1180000
Cons ci ratio: 4.328764e-01	ci left: 5.451366e-05	ci right 8.531760e-05	k: 81	n:1180000
KS ci ratio: 1.836193e-03	ci left: 7.936086e-01	ci right 7.950679e-01	k: 937320	n:1180000
UXS1   1180000 perm   768 sec   (1537 perm/sec)   p_kst 7.943390e-01   p_cons 6.864407e-05   p_joint 1.788136e-04

Joint ci ratio: 2.692026e-01	ci left: 1.541938e-04	ci right 2.029155e-04	k: 211	n:1190000
Cons ci ratio: 4.328765e-01	ci left: 5.405556e-05	ci right 8.460065e-05	k: 81	n:1190000
KS ci ratio: 1.827993e-03	ci left: 7.936955e-01	ci right 7.951485e-01	k: 945363	n:1190000
UXS1   1190000 perm   779 sec   (1527 perm/sec)   p_kst 7.944227e-01   p_cons 6.806723e-05   p_joint 1.773109e-04

Joint ci ratio: 2.673177e-01	ci left: 1.552407e-04	ci right 2.038923e-04	k: 214	n:1200000
Cons ci ratio: 4.276919e-01	ci left: 5.509123e-05	ci right 8.574178e-05	k: 83	n:1200000
KS ci ratio: 1.819976e-03	ci left: 7.937676e-01	ci right 7.952143e-01	k: 953390	n:1200000
UXS1   1200000 perm   790 sec   (1518 perm/sec)   p_kst 7.944917e-01   p_cons 6.916667e-05   p_joint 1.783333e-04

Joint ci ratio: 2.660830e-01	ci left: 1.555001e-04	ci right 2.039703e-04	k: 216	n:1210000
Cons ci ratio: 4.251686e-01	ci left: 5.537366e-05	ci right 8.594782e-05	k: 84	n:1210000
KS ci ratio: 1.812581e-03	ci left: 7.937450e-01	ci right 7.951858e-01	k: 961304	n:1210000
UXS1   1210000 perm   802 sec   (1510 perm/sec)   p_kst 7.944661e-01   p_cons 6.942149e-05   p_joint 1.785124e-04

Joint ci ratio: 3.118381e-01	ci left: 1.093470e-04	ci right 1.504651e-04	k: 157	n:1220000
Cons ci ratio: 4.202530e-01	ci left: 5.638472e-05	ci right 8.705608e-05	k: 86	n:1220000
KS ci ratio: 1.805317e-03	ci left: 7.937154e-01	ci right 7.951504e-01	k: 969209	n:1220000
UXS1   1220000 perm   813 sec   (1501 perm/sec)   p_kst 7.944336e-01   p_cons 7.049180e-05   p_joint 1.286885e-04

Joint ci ratio: 3.108560e-01	ci left: 1.092075e-04	ci right 1.501181e-04	k: 158	n:1230000
Cons ci ratio: 4.202531e-01	ci left: 5.592630e-05	ci right 8.634832e-05	k: 86	n:1230000
KS ci ratio: 1.797714e-03	ci left: 7.937637e-01	ci right 7.951927e-01	k: 977209	n:1230000
UXS1   1230000 perm   824 sec   (1492 perm/sec)   p_kst 7.944789e-01   p_cons 6.991870e-05   p_joint 1.284553e-04

Joint ci ratio: 3.098831e-01	ci left: 1.090705e-04	ci right 1.497766e-04	k: 159	n:1240000
Cons ci ratio: 4.202532e-01	ci left: 5.547528e-05	ci right 8.565196e-05	k: 86	n:1240000
KS ci ratio: 1.790512e-03	ci left: 7.937554e-01	ci right 7.951787e-01	k: 985140	n:1240000
UXS1   1240000 perm   836 sec   (1483 perm/sec)   p_kst 7.944677e-01   p_cons 6.935484e-05   p_joint 1.282258e-04

Joint ci ratio: 3.079642e-01	ci left: 1.096739e-04	ci right 1.503020e-04	k: 161	n:1250000
Cons ci ratio: 4.178585e-01	ci left: 5.574711e-05	ci right 8.585065e-05	k: 87	n:1250000
KS ci ratio: 1.783557e-03	ci left: 7.937177e-01	ci right 7.951354e-01	k: 993034	n:1250000
UXS1   1250000 perm   847 sec   (1475 perm/sec)   p_kst 7.944272e-01   p_cons 6.960000e-05   p_joint 1.288000e-04

Joint ci ratio: 3.070181e-01	ci left: 1.095359e-04	ci right 1.499638e-04	k: 162	n:1260000
Cons ci ratio: 4.155043e-01	ci left: 5.601511e-05	ci right 8.604570e-05	k: 88	n:1260000
KS ci ratio: 1.776578e-03	ci left: 7.936996e-01	ci right 7.951117e-01	k: 1000952	n:1260000
UXS1   1260000 perm   859 sec   (1466 perm/sec)   p_kst 7.944063e-01   p_cons 6.984127e-05   p_joint 1.285714e-04

Joint ci ratio: 3.060807e-01	ci left: 1.094002e-04	ci right 1.496308e-04	k: 163	n:1270000
Cons ci ratio: 4.131895e-01	ci left: 5.627935e-05	ci right 8.623722e-05	k: 89	n:1270000
KS ci ratio: 1.769673e-03	ci left: 7.936834e-01	ci right 7.950900e-01	k: 1008872	n:1270000
UXS1   1270000 perm   871 sec   (1459 perm/sec)   p_kst 7.943874e-01   p_cons 7.007874e-05   p_joint 1.283465e-04

Joint ci ratio: 3.051518e-01	ci left: 1.092669e-04	ci right 1.493028e-04	k: 164	n:1280000
Cons ci ratio: 4.109129e-01	ci left: 5.653992e-05	ci right 8.642530e-05	k: 90	n:1280000
KS ci ratio: 1.762872e-03	ci left: 7.936628e-01	ci right 7.950640e-01	k: 1016786	n:1280000
UXS1   1280000 perm   883 sec   (1450 perm/sec)   p_kst 7.943641e-01   p_cons 7.031250e-05   p_joint 1.281250e-04

Joint ci ratio: 3.033190e-01	ci left: 1.098519e-04	ci right 1.498137e-04	k: 166	n:1290000
Cons ci ratio: 4.064703e-01	ci left: 5.749261e-05	ci right 8.746428e-05	k: 92	n:1290000
KS ci ratio: 1.756429e-03	ci left: 7.935906e-01	ci right 7.949864e-01	k: 1024633	n:1290000
UXS1   1290000 perm   894 sec   (1442 perm/sec)   p_kst 7.942891e-01   p_cons 7.131783e-05   p_joint 1.286822e-04

Joint ci ratio: 3.024149e-01	ci left: 1.097177e-04	ci right 1.494888e-04	k: 167	n:1300000
Cons ci ratio: 4.064704e-01	ci left: 5.705036e-05	ci right 8.679148e-05	k: 92	n:1300000
KS ci ratio: 1.749681e-03	ci left: 7.935895e-01	ci right 7.949800e-01	k: 1032571	n:1300000
UXS1   1300000 perm   907 sec   (1434 perm/sec)   p_kst 7.942854e-01   p_cons 7.076923e-05   p_joint 1.284615e-04

Joint ci ratio: 3.024151e-01	ci left: 1.088801e-04	ci right 1.483477e-04	k: 167	n:1310000
Cons ci ratio: 4.064705e-01	ci left: 5.661486e-05	ci right 8.612896e-05	k: 92	n:1310000
KS ci ratio: 1.743127e-03	ci left: 7.935663e-01	ci right 7.949515e-01	k: 1040480	n:1310000
UXS1   1310000 perm   919 sec   (1426 perm/sec)   p_kst 7.942595e-01   p_cons 7.022901e-05   p_joint 1.274809e-04

Joint ci ratio: 3.024152e-01	ci left: 1.080553e-04	ci right 1.472239e-04	k: 167	n:1320000
Cons ci ratio: 4.064706e-01	ci left: 5.618595e-05	ci right 8.547647e-05	k: 92	n:1320000
KS ci ratio: 1.736466e-03	ci left: 7.935776e-01	ci right 7.949575e-01	k: 1048434	n:1320000
UXS1   1320000 perm   931 sec   (1418 perm/sec)   p_kst 7.942682e-01   p_cons 6.969697e-05   p_joint 1.265152e-04

Joint ci ratio: 3.024154e-01	ci left: 1.072428e-04	ci right 1.461169e-04	k: 167	n:1330000
Cons ci ratio: 4.064707e-01	ci left: 5.576350e-05	ci right 8.483380e-05	k: 92	n:1330000
KS ci ratio: 1.729805e-03	ci left: 7.936030e-01	ci right 7.949777e-01	k: 1056407	n:1330000
UXS1   1330000 perm   943 sec   (1410 perm/sec)   p_kst 7.942910e-01   p_cons 6.917293e-05   p_joint 1.255639e-04

Joint ci ratio: 3.024155e-01	ci left: 1.064425e-04	ci right 1.450265e-04	k: 167	n:1340000
Cons ci ratio: 4.064708e-01	ci left: 5.534735e-05	ci right 8.420071e-05	k: 92	n:1340000
KS ci ratio: 1.723216e-03	ci left: 7.936288e-01	ci right 7.949983e-01	k: 1064381	n:1340000
UXS1   1340000 perm   955 sec   (1402 perm/sec)   p_kst 7.943142e-01   p_cons 6.865672e-05   p_joint 1.246269e-04

Joint ci ratio: 3.006312e-01	ci left: 1.070235e-04	ci right 1.455455e-04	k: 169	n:1350000
Cons ci ratio: 4.043029e-01	ci left: 5.560257e-05	ci right 8.439289e-05	k: 93	n:1350000
KS ci ratio: 1.716675e-03	ci left: 7.936594e-01	ci right 7.950238e-01	k: 1072362	n:1350000
UXS1   1350000 perm   968 sec   (1395 perm/sec)   p_kst 7.943422e-01   p_cons 6.888889e-05   p_joint 1.251852e-04

Joint ci ratio: 2.988782e-01	ci left: 1.075965e-04	ci right 1.460561e-04	k: 171	n:1360000
Cons ci ratio: 4.021693e-01	ci left: 5.585444e-05	ci right 8.458184e-05	k: 94	n:1360000
KS ci ratio: 1.710373e-03	ci left: 7.936579e-01	ci right 7.950173e-01	k: 1080300	n:1360000
UXS1   1360000 perm   980 sec   (1387 perm/sec)   p_kst 7.943382e-01   p_cons 6.911765e-05   p_joint 1.257353e-04

Joint ci ratio: 2.980132e-01	ci left: 1.074865e-04	ci right 1.457744e-04	k: 172	n:1370000
Cons ci ratio: 4.021694e-01	ci left: 5.544675e-05	ci right 8.396446e-05	k: 94	n:1370000
KS ci ratio: 1.704010e-03	ci left: 7.936814e-01	ci right 7.950357e-01	k: 1088272	n:1370000
UXS1   1370000 perm   993 sec   (1380 perm/sec)   p_kst 7.943591e-01   p_cons 6.861314e-05   p_joint 1.255474e-04

Joint ci ratio: 2.980133e-01	ci left: 1.067076e-04	ci right 1.447181e-04	k: 172	n:1380000
Cons ci ratio: 4.021695e-01	ci left: 5.504495e-05	ci right 8.335603e-05	k: 94	n:1380000
KS ci ratio: 1.698151e-03	ci left: 7.936210e-01	ci right 7.949705e-01	k: 1096129	n:1380000
UXS1   1380000 perm   1006 sec   (1372 perm/sec)   p_kst 7.942964e-01   p_cons 6.811594e-05   p_joint 1.246377e-04

Joint ci ratio: 2.963054e-01	ci left: 1.072715e-04	ci right 1.452228e-04	k: 174	n:1390000
Cons ci ratio: 3.980017e-01	ci left: 5.594301e-05	ci right 8.433923e-05	k: 96	n:1390000
KS ci ratio: 1.691961e-03	ci left: 7.936371e-01	ci right 7.949818e-01	k: 1104091	n:1390000
UXS1   1390000 perm   1019 sec   (1364 perm/sec)   p_kst 7.943101e-01   p_cons 6.906475e-05   p_joint 1.251799e-04

Joint ci ratio: 2.929757e-01	ci left: 1.091513e-04	ci right 1.472531e-04	k: 178	n:1400000
Cons ci ratio: 3.919859e-01	ci left: 5.747344e-05	ci right 8.609144e-05	k: 99	n:1400000
KS ci ratio: 1.685893e-03	ci left: 7.936423e-01	ci right 7.949822e-01	k: 1112038	n:1400000
UXS1   1400000 perm   1032 sec   (1357 perm/sec)   p_kst 7.943129e-01   p_cons 7.071429e-05   p_joint 1.271429e-04

Joint ci ratio: 2.921608e-01	ci left: 1.090343e-04	ci right 1.469699e-04	k: 179	n:1410000
Cons ci ratio: 3.900405e-01	ci left: 5.770532e-05	ci right 8.625948e-05	k: 100	n:1410000
KS ci ratio: 1.679711e-03	ci left: 7.936823e-01	ci right 7.950172e-01	k: 1120034	n:1410000
UXS1   1410000 perm   1045 sec   (1350 perm/sec)   p_kst 7.943504e-01   p_cons 7.092199e-05   p_joint 1.269504e-04

Joint ci ratio: 2.921609e-01	ci left: 1.082665e-04	ci right 1.459349e-04	k: 179	n:1420000
Cons ci ratio: 3.900406e-01	ci left: 5.729894e-05	ci right 8.565202e-05	k: 100	n:1420000
KS ci ratio: 1.673784e-03	ci left: 7.936850e-01	ci right 7.950152e-01	k: 1127978	n:1420000
UXS1   1420000 perm   1058 sec   (1343 perm/sec)   p_kst 7.943507e-01   p_cons 7.042254e-05   p_joint 1.260563e-04

Joint ci ratio: 2.921611e-01	ci left: 1.075094e-04	ci right 1.449144e-04	k: 179	n:1430000
Cons ci ratio: 3.900407e-01	ci left: 5.689825e-05	ci right 8.505306e-05	k: 100	n:1430000
KS ci ratio: 1.667584e-03	ci left: 7.937535e-01	ci right 7.950789e-01	k: 1136016	n:1430000
UXS1   1430000 perm   1072 sec   (1334 perm/sec)   p_kst 7.944168e-01   p_cons 6.993007e-05   p_joint 1.251748e-04

Joint ci ratio: 2.913529e-01	ci left: 1.074064e-04	ci right 1.446532e-04	k: 180	n:1440000
Cons ci ratio: 3.881240e-01	ci left: 5.712963e-05	ci right 8.522447e-05	k: 101	n:1440000
KS ci ratio: 1.661869e-03	ci left: 7.937390e-01	ci right 7.950598e-01	k: 1143936	n:1440000
UXS1   1440000 perm   1085 sec   (1327 perm/sec)   p_kst 7.944000e-01   p_cons 7.013889e-05   p_joint 1.250000e-04

Joint ci ratio: 2.905514e-01	ci left: 1.073050e-04	ci right 1.443954e-04	k: 181	n:1450000
Cons ci ratio: 3.862352e-01	ci left: 5.735815e-05	ci right 8.539318e-05	k: 102	n:1450000
KS ci ratio: 1.655915e-03	ci left: 7.937834e-01	ci right 7.950996e-01	k: 1151941	n:1450000
UXS1   1450000 perm   1099 sec   (1319 perm/sec)   p_kst 7.944421e-01   p_cons 7.034483e-05   p_joint 1.248276e-04

Joint ci ratio: 2.905515e-01	ci left: 1.065700e-04	ci right 1.434064e-04	k: 181	n:1460000
Cons ci ratio: 3.862353e-01	ci left: 5.696529e-05	ci right 8.480830e-05	k: 102	n:1460000
KS ci ratio: 1.650240e-03	ci left: 7.937847e-01	ci right 7.950964e-01	k: 1159884	n:1460000
UXS1   1460000 perm   1112 sec   (1312 perm/sec)   p_kst 7.944411e-01   p_cons 6.986301e-05   p_joint 1.239726e-04

Joint ci ratio: 2.889680e-01	ci left: 1.071067e-04	ci right 1.438900e-04	k: 183	n:1470000
Cons ci ratio: 3.843739e-01	ci left: 5.719214e-05	ci right 8.497723e-05	k: 103	n:1470000
KS ci ratio: 1.644547e-03	ci left: 7.938009e-01	ci right 7.951081e-01	k: 1167849	n:1470000
UXS1   1470000 perm   1125 sec   (1306 perm/sec)   p_kst 7.944551e-01   p_cons 7.006803e-05   p_joint 1.244898e-04

Joint ci ratio: 2.889682e-01	ci left: 1.063830e-04	ci right 1.429178e-04	k: 183	n:1480000
Cons ci ratio: 3.843740e-01	ci left: 5.680571e-05	ci right 8.440306e-05	k: 103	n:1480000
KS ci ratio: 1.639156e-03	ci left: 7.937683e-01	ci right 7.950711e-01	k: 1175742	n:1480000
UXS1   1480000 perm   1139 sec   (1299 perm/sec)   p_kst 7.944203e-01   p_cons 6.959459e-05   p_joint 1.236486e-04

Joint ci ratio: 2.889683e-01	ci left: 1.056690e-04	ci right 1.419586e-04	k: 183	n:1490000
Cons ci ratio: 3.843741e-01	ci left: 5.642446e-05	ci right 8.383660e-05	k: 103	n:1490000
KS ci ratio: 1.633590e-03	ci left: 7.937818e-01	ci right 7.950802e-01	k: 1183703	n:1490000
UXS1   1490000 perm   1152 sec   (1293 perm/sec)   p_kst 7.944315e-01   p_cons 6.912752e-05   p_joint 1.228188e-04

Joint ci ratio: 2.881863e-01	ci left: 1.055830e-04	ci right 1.417270e-04	k: 184	n:1500000
Cons ci ratio: 3.825393e-01	ci left: 5.665070e-05	ci right 8.400832e-05	k: 104	n:1500000
KS ci ratio: 1.628266e-03	ci left: 7.937577e-01	ci right 7.950518e-01	k: 1191608	n:1500000
UXS1   1500000 perm   1166 sec   (1287 perm/sec)   p_kst 7.944053e-01   p_cons 6.933333e-05   p_joint 1.226667e-04

Joint ci ratio: 2.874105e-01	ci left: 1.054982e-04	ci right 1.414983e-04	k: 185	n:1510000
Cons ci ratio: 3.807306e-01	ci left: 5.687425e-05	ci right 8.417746e-05	k: 105	n:1510000
KS ci ratio: 1.622895e-03	ci left: 7.937538e-01	ci right 7.950437e-01	k: 1199543	n:1510000
UXS1   1510000 perm   1179 sec   (1280 perm/sec)   p_kst 7.943993e-01   p_cons 6.953642e-05   p_joint 1.225166e-04

Joint ci ratio: 2.858776e-01	ci left: 1.060254e-04	ci right 1.419776e-04	k: 187	n:1520000
Cons ci ratio: 3.789472e-01	ci left: 5.709515e-05	ci right 8.434409e-05	k: 106	n:1520000
KS ci ratio: 1.617486e-03	ci left: 7.937685e-01	ci right 7.950541e-01	k: 1207506	n:1520000
UXS1   1520000 perm   1193 sec   (1274 perm/sec)   p_kst 7.944118e-01   p_cons 6.973684e-05   p_joint 1.230263e-04

Joint ci ratio: 2.843689e-01	ci left: 1.065461e-04	ci right 1.424500e-04	k: 189	n:1530000
Cons ci ratio: 3.771887e-01	ci left: 5.731347e-05	ci right 8.450824e-05	k: 107	n:1530000
KS ci ratio: 1.612247e-03	ci left: 7.937594e-01	ci right 7.950408e-01	k: 1215433	n:1530000
UXS1   1530000 perm   1207 sec   (1268 perm/sec)   p_kst 7.944007e-01   p_cons 6.993464e-05   p_joint 1.235294e-04

Joint ci ratio: 2.821500e-01	ci left: 1.076640e-04	ci right 1.436111e-04	k: 192	n:1540000
Cons ci ratio: 3.737439e-01	ci left: 5.811745e-05	ci right 8.538018e-05	k: 109	n:1540000
KS ci ratio: 1.607205e-03	ci left: 7.937205e-01	ci right 7.949978e-01	k: 1223314	n:1540000
UXS1   1540000 perm   1221 sec   (1262 perm/sec)   p_kst 7.943597e-01   p_cons 7.077922e-05   p_joint 1.246753e-04

Joint ci ratio: 2.821501e-01	ci left: 1.069693e-04	ci right 1.426845e-04	k: 192	n:1550000
Cons ci ratio: 3.737440e-01	ci left: 5.774250e-05	ci right 8.482935e-05	k: 109	n:1550000
KS ci ratio: 1.601827e-03	ci left: 7.937603e-01	ci right 7.950334e-01	k: 1231316	n:1550000
UXS1   1550000 perm   1234 sec   (1256 perm/sec)   p_kst 7.943974e-01   p_cons 7.032258e-05   p_joint 1.238710e-04

Joint ci ratio: 2.814220e-01	ci left: 1.068794e-04	ci right 1.424561e-04	k: 193	n:1560000
Cons ci ratio: 3.737440e-01	ci left: 5.737235e-05	ci right 8.428557e-05	k: 109	n:1560000
KS ci ratio: 1.596588e-03	ci left: 7.937823e-01	ci right 7.950512e-01	k: 1239291	n:1560000
UXS1   1560000 perm   1248 sec   (1250 perm/sec)   p_kst 7.944173e-01   p_cons 6.987179e-05   p_joint 1.237179e-04

Joint ci ratio: 2.799824e-01	ci left: 1.073828e-04	ci right 1.429121e-04	k: 195	n:1570000
Cons ci ratio: 3.737441e-01	ci left: 5.700692e-05	ci right 8.374873e-05	k: 109	n:1570000
KS ci ratio: 1.591433e-03	ci left: 7.937969e-01	ci right 7.950618e-01	k: 1247255	n:1570000
UXS1   1570000 perm   1262 sec   (1244 perm/sec)   p_kst 7.944299e-01   p_cons 6.942675e-05   p_joint 1.242038e-04

Joint ci ratio: 2.799825e-01	ci left: 1.067032e-04	ci right 1.420076e-04	k: 195	n:1580000
Cons ci ratio: 3.737442e-01	ci left: 5.664612e-05	ci right 8.321867e-05	k: 109	n:1580000
KS ci ratio: 1.586470e-03	ci left: 7.937823e-01	ci right 7.950432e-01	k: 1255173	n:1580000
UXS1   1580000 perm   1276 sec   (1238 perm/sec)   p_kst 7.944133e-01   p_cons 6.898734e-05   p_joint 1.234177e-04

Joint ci ratio: 2.792710e-01	ci left: 1.066169e-04	ci right 1.417873e-04	k: 196	n:1590000
Cons ci ratio: 3.720568e-01	ci left: 5.685984e-05	ci right 8.338290e-05	k: 110	n:1590000
KS ci ratio: 1.581477e-03	ci left: 7.937836e-01	ci right 7.950405e-01	k: 1263116	n:1590000
UXS1   1590000 perm   1290 sec   (1232 perm/sec)   p_kst 7.944126e-01   p_cons 6.918239e-05   p_joint 1.232704e-04

Joint ci ratio: 2.785649e-01	ci left: 1.065319e-04	ci right 1.415698e-04	k: 197	n:1600000
Cons ci ratio: 3.703921e-01	ci left: 5.707116e-05	ci right 8.354480e-05	k: 111	n:1600000
KS ci ratio: 1.576283e-03	ci left: 7.938361e-01	ci right 7.950890e-01	k: 1271141	n:1600000
UXS1   1600000 perm   1304 sec   (1227 perm/sec)   p_kst 7.944631e-01   p_cons 6.937500e-05   p_joint 1.231250e-04

Joint ci ratio: 2.785651e-01	ci left: 1.058702e-04	ci right 1.406905e-04	k: 197	n:1610000
Cons ci ratio: 3.703922e-01	ci left: 5.671668e-05	ci right 8.302590e-05	k: 111	n:1610000
KS ci ratio: 1.571259e-03	ci left: 7.938632e-01	ci right 7.951121e-01	k: 1279126	n:1610000
UXS1   1610000 perm   1319 sec   (1221 perm/sec)   p_kst 7.944882e-01   p_cons 6.894410e-05   p_joint 1.223602e-04

Joint ci ratio: 2.785652e-01	ci left: 1.052167e-04	ci right 1.398220e-04	k: 197	n:1620000
Cons ci ratio: 3.703923e-01	ci left: 5.636658e-05	ci right 8.251339e-05	k: 111	n:1620000
KS ci ratio: 1.566298e-03	ci left: 7.938868e-01	ci right 7.951319e-01	k: 1287106	n:1620000
UXS1   1620000 perm   1334 sec   (1215 perm/sec)   p_kst 7.945099e-01   p_cons 6.851852e-05   p_joint 1.216049e-04

Joint ci ratio: 2.785653e-01	ci left: 1.045712e-04	ci right 1.389642e-04	k: 197	n:1630000
Cons ci ratio: 3.703923e-01	ci left: 5.602077e-05	ci right 8.200718e-05	k: 111	n:1630000
KS ci ratio: 1.561387e-03	ci left: 7.939096e-01	ci right 7.951507e-01	k: 1295085	n:1630000
UXS1   1630000 perm   1348 sec   (1209 perm/sec)   p_kst 7.945307e-01   p_cons 6.809816e-05   p_joint 1.208589e-04

Joint ci ratio: 2.785654e-01	ci left: 1.039335e-04	ci right 1.381169e-04	k: 197	n:1640000
Cons ci ratio: 3.703924e-01	ci left: 5.567918e-05	ci right 8.150714e-05	k: 111	n:1640000
KS ci ratio: 1.556579e-03	ci left: 7.939198e-01	ci right 7.951572e-01	k: 1303044	n:1640000
UXS1   1640000 perm   1363 sec   (1203 perm/sec)   p_kst 7.945390e-01   p_cons 6.768293e-05   p_joint 1.201220e-04

Joint ci ratio: 2.778646e-01	ci left: 1.038674e-04	ci right 1.379281e-04	k: 198	n:1650000
Cons ci ratio: 3.687498e-01	ci left: 5.589150e-05	ci right 8.167526e-05	k: 112	n:1650000
KS ci ratio: 1.551969e-03	ci left: 7.938978e-01	ci right 7.951315e-01	k: 1310950	n:1650000
UXS1   1650000 perm   1378 sec   (1198 perm/sec)   p_kst 7.945152e-01   p_cons 6.787879e-05   p_joint 1.200000e-04

Joint ci ratio: 2.764787e-01	ci left: 1.043628e-04	ci right 1.383855e-04	k: 200	n:1660000
Cons ci ratio: 3.671289e-01	ci left: 5.610152e-05	ci right 8.184110e-05	k: 113	n:1660000
KS ci ratio: 1.547316e-03	ci left: 7.938936e-01	ci right 7.951235e-01	k: 1318885	n:1660000
UXS1   1660000 perm   1392 sec   (1192 perm/sec)   p_kst 7.945090e-01   p_cons 6.807229e-05   p_joint 1.204819e-04

Joint ci ratio: 2.757935e-01	ci left: 1.042952e-04	ci right 1.381970e-04	k: 201	n:1670000
Cons ci ratio: 3.655292e-01	ci left: 5.630927e-05	ci right 8.200472e-05	k: 114	n:1670000
KS ci ratio: 1.542646e-03	ci left: 7.939019e-01	ci right 7.951282e-01	k: 1326841	n:1670000
UXS1   1670000 perm   1408 sec   (1186 perm/sec)   p_kst 7.945156e-01   p_cons 6.826347e-05   p_joint 1.203593e-04

Joint ci ratio: 2.751134e-01	ci left: 1.042285e-04	ci right 1.380106e-04	k: 202	n:1680000
Cons ci ratio: 3.639502e-01	ci left: 5.651478e-05	ci right 8.216615e-05	k: 115	n:1680000
KS ci ratio: 1.538121e-03	ci left: 7.938882e-01	ci right 7.951108e-01	k: 1334760	n:1680000
UXS1   1680000 perm   1423 sec   (1181 perm/sec)   p_kst 7.945000e-01   p_cons 6.845238e-05   p_joint 1.202381e-04

Joint ci ratio: 2.731026e-01	ci left: 1.052650e-04	ci right 1.390909e-04	k: 205	n:1690000
Cons ci ratio: 3.623915e-01	ci left: 5.671810e-05	ci right 8.232544e-05	k: 116	n:1690000
KS ci ratio: 1.533739e-03	ci left: 7.938527e-01	ci right 7.950718e-01	k: 1342642	n:1690000
UXS1   1690000 perm   1438 sec   (1175 perm/sec)   p_kst 7.944627e-01   p_cons 6.863905e-05   p_joint 1.213018e-04

Joint ci ratio: 2.717864e-01	ci left: 1.057419e-04	ci right 1.395293e-04	k: 207	n:1700000
Cons ci ratio: 3.608526e-01	ci left: 5.691926e-05	ci right 8.248263e-05	k: 117	n:1700000
KS ci ratio: 1.529154e-03	ci left: 7.938688e-01	ci right 7.950843e-01	k: 1350611	n:1700000
UXS1   1700000 perm   1453 sec   (1170 perm/sec)   p_kst 7.944771e-01   p_cons 6.882353e-05   p_joint 1.217647e-04

Joint ci ratio: 2.711354e-01	ci left: 1.056685e-04	ci right 1.393378e-04	k: 208	n:1710000
Cons ci ratio: 3.593332e-01	ci left: 5.711829e-05	ci right 8.263776e-05	k: 118	n:1710000
KS ci ratio: 1.524924e-03	ci left: 7.938175e-01	ci right 7.950295e-01	k: 1358465	n:1710000
UXS1   1710000 perm   1469 sec   (1164 perm/sec)   p_kst 7.944240e-01   p_cons 6.900585e-05   p_joint 1.216374e-04

Joint ci ratio: 2.698473e-01	ci left: 1.061381e-04	ci right 1.397692e-04	k: 210	n:1720000
Cons ci ratio: 3.578328e-01	ci left: 5.731523e-05	ci right 8.279086e-05	k: 119	n:1720000
KS ci ratio: 1.520566e-03	ci left: 7.938016e-01	ci right 7.950102e-01	k: 1366379	n:1720000
UXS1   1720000 perm   1484 sec   (1159 perm/sec)   p_kst 7.944064e-01   p_cons 6.918605e-05   p_joint 1.220930e-04

Joint ci ratio: 2.692101e-01	ci left: 1.060635e-04	ci right 1.395783e-04	k: 211	n:1730000
Cons ci ratio: 3.563511e-01	ci left: 5.751011e-05	ci right 8.294197e-05	k: 120	n:1730000
KS ci ratio: 1.516356e-03	ci left: 7.937623e-01	ci right 7.949674e-01	k: 1374252	n:1730000
UXS1   1730000 perm   1499 sec   (1154 perm/sec)   p_kst 7.943653e-01   p_cons 6.936416e-05   p_joint 1.219653e-04

Joint ci ratio: 2.685775e-01	ci left: 1.059900e-04	ci right 1.393895e-04	k: 212	n:1740000
Cons ci ratio: 3.548876e-01	ci left: 5.770296e-05	ci right 8.309114e-05	k: 121	n:1740000
KS ci ratio: 1.512015e-03	ci left: 7.937590e-01	ci right 7.949607e-01	k: 1382187	n:1740000
UXS1   1740000 perm   1515 sec   (1149 perm/sec)   p_kst 7.943603e-01   p_cons 6.954023e-05   p_joint 1.218391e-04

Joint ci ratio: 2.679492e-01	ci left: 1.059173e-04	ci right 1.392027e-04	k: 213	n:1750000
Cons ci ratio: 3.548877e-01	ci left: 5.737323e-05	ci right 8.261633e-05	k: 121	n:1750000
KS ci ratio: 1.507780e-03	ci left: 7.937410e-01	ci right 7.949392e-01	k: 1390096	n:1750000
UXS1   1750000 perm   1530 sec   (1144 perm/sec)   p_kst 7.943406e-01   p_cons 6.914286e-05   p_joint 1.217143e-04

Joint ci ratio: 2.673254e-01	ci left: 1.058456e-04	ci right 1.390180e-04	k: 214	n:1760000
Cons ci ratio: 3.534420e-01	ci left: 5.756488e-05	ci right 8.276545e-05	k: 122	n:1760000
KS ci ratio: 1.503622e-03	ci left: 7.937140e-01	ci right 7.949089e-01	k: 1397989	n:1760000
UXS1   1760000 perm   1546 sec   (1138 perm/sec)   p_kst 7.943119e-01   p_cons 6.931818e-05   p_joint 1.215909e-04

Joint ci ratio: 2.673255e-01	ci left: 1.052476e-04	ci right 1.382326e-04	k: 214	n:1770000
Cons ci ratio: 3.534421e-01	ci left: 5.723966e-05	ci right 8.229785e-05	k: 122	n:1770000
KS ci ratio: 1.499289e-03	ci left: 7.937332e-01	ci right 7.949246e-01	k: 1405963	n:1770000
UXS1   1770000 perm   1562 sec   (1133 perm/sec)   p_kst 7.943294e-01   p_cons 6.892655e-05   p_joint 1.209040e-04

Joint ci ratio: 2.667060e-01	ci left: 1.051805e-04	ci right 1.380553e-04	k: 215	n:1780000
Cons ci ratio: 3.520140e-01	ci left: 5.743011e-05	ci right 8.244688e-05	k: 123	n:1780000
KS ci ratio: 1.495021e-03	ci left: 7.937459e-01	ci right 7.949340e-01	k: 1413926	n:1780000
UXS1   1780000 perm   1578 sec   (1128 perm/sec)   p_kst 7.943404e-01   p_cons 6.910112e-05   p_joint 1.207865e-04

Joint ci ratio: 2.660907e-01	ci left: 1.051142e-04	ci right 1.378800e-04	k: 216	n:1790000
Cons ci ratio: 3.506031e-01	ci left: 5.761864e-05	ci right 8.259404e-05	k: 124	n:1790000
KS ci ratio: 1.490845e-03	ci left: 7.937462e-01	ci right 7.949310e-01	k: 1421867	n:1790000
UXS1   1790000 perm   1594 sec   (1123 perm/sec)   p_kst 7.943391e-01   p_cons 6.927374e-05   p_joint 1.206704e-04

Joint ci ratio: 2.660908e-01	ci left: 1.045303e-04	ci right 1.371140e-04	k: 216	n:1800000
Cons ci ratio: 3.506032e-01	ci left: 5.729853e-05	ci right 8.213519e-05	k: 124	n:1800000
KS ci ratio: 1.486836e-03	ci left: 7.937176e-01	ci right 7.948992e-01	k: 1429756	n:1800000
UXS1   1800000 perm   1610 sec   (1118 perm/sec)   p_kst 7.943089e-01   p_cons 6.888889e-05   p_joint 1.200000e-04

Joint ci ratio: 2.654798e-01	ci left: 1.044684e-04	ci right 1.369456e-04	k: 217	n:1810000
Cons ci ratio: 3.506033e-01	ci left: 5.698196e-05	ci right 8.168140e-05	k: 124	n:1810000
KS ci ratio: 1.482760e-03	ci left: 7.937109e-01	ci right 7.948892e-01	k: 1437684	n:1810000
UXS1   1810000 perm   1626 sec   (1113 perm/sec)   p_kst 7.943006e-01   p_cons 6.850829e-05   p_joint 1.198895e-04

Joint ci ratio: 2.654799e-01	ci left: 1.038944e-04	ci right 1.361932e-04	k: 217	n:1820000
Cons ci ratio: 3.506033e-01	ci left: 5.666887e-05	ci right 8.123261e-05	k: 124	n:1820000
KS ci ratio: 1.478699e-03	ci left: 7.937087e-01	ci right 7.948838e-01	k: 1445620	n:1820000
UXS1   1820000 perm   1642 sec   (1108 perm/sec)   p_kst 7.942967e-01   p_cons 6.813187e-05   p_joint 1.192308e-04

Joint ci ratio: 2.654800e-01	ci left: 1.033267e-04	ci right 1.354490e-04	k: 217	n:1830000
Cons ci ratio: 3.506034e-01	ci left: 5.635920e-05	ci right 8.078872e-05	k: 124	n:1830000
KS ci ratio: 1.474660e-03	ci left: 7.937087e-01	ci right 7.948805e-01	k: 1453560	n:1830000
UXS1   1830000 perm   1658 sec   (1103 perm/sec)   p_kst 7.942951e-01   p_cons 6.775956e-05   p_joint 1.185792e-04

Joint ci ratio: 2.636718e-01	ci left: 1.042874e-04	ci right 1.364512e-04	k: 220	n:1840000
Cons ci ratio: 3.478317e-01	ci left: 5.704453e-05	ci right 8.153156e-05	k: 126	n:1840000
KS ci ratio: 1.470821e-03	ci left: 7.936717e-01	ci right 7.948404e-01	k: 1461432	n:1840000
UXS1   1840000 perm   1675 sec   (1099 perm/sec)   p_kst 7.942565e-01   p_cons 6.847826e-05   p_joint 1.195652e-04

Joint ci ratio: 2.630773e-01	ci left: 1.042286e-04	ci right 1.362897e-04	k: 221	n:1850000
Cons ci ratio: 3.464702e-01	ci left: 5.722960e-05	ci right 8.167834e-05	k: 127	n:1850000
KS ci ratio: 1.466781e-03	ci left: 7.936865e-01	ci right 7.948520e-01	k: 1469399	n:1850000
UXS1   1850000 perm   1691 sec   (1094 perm/sec)   p_kst 7.942697e-01   p_cons 6.864865e-05   p_joint 1.194595e-04

Joint ci ratio: 2.613175e-01	ci left: 1.051751e-04	ci right 1.372756e-04	k: 224	n:1860000
Cons ci ratio: 3.424798e-01	ci left: 5.839530e-05	ci right 8.299109e-05	k: 130	n:1860000
KS ci ratio: 1.462849e-03	ci left: 7.936845e-01	ci right 7.948469e-01	k: 1477335	n:1860000
UXS1   1860000 perm   1708 sec   (1089 perm/sec)   p_kst 7.942661e-01   p_cons 6.989247e-05   p_joint 1.204301e-04

Joint ci ratio: 2.607387e-01	ci left: 1.051125e-04	ci right 1.371112e-04	k: 225	n:1870000
Cons ci ratio: 3.411801e-01	ci left: 5.857188e-05	ci right 8.312778e-05	k: 131	n:1870000
KS ci ratio: 1.459037e-03	ci left: 7.936627e-01	ci right 7.948220e-01	k: 1485234	n:1870000
UXS1   1870000 perm   1724 sec   (1085 perm/sec)   p_kst 7.942428e-01   p_cons 7.005348e-05   p_joint 1.203209e-04

Joint ci ratio: 2.595925e-01	ci left: 1.055478e-04	ci right 1.375150e-04	k: 227	n:1880000
Cons ci ratio: 3.398950e-01	ci left: 5.874676e-05	ci right 8.326284e-05	k: 132	n:1880000
KS ci ratio: 1.455188e-03	ci left: 7.936560e-01	ci right 7.948123e-01	k: 1493161	n:1880000
UXS1   1880000 perm   1741 sec   (1080 perm/sec)   p_kst 7.942346e-01   p_cons 7.021277e-05   p_joint 1.207447e-04

Joint ci ratio: 2.590251e-01	ci left: 1.054841e-04	ci right 1.373508e-04	k: 228	n:1890000
Cons ci ratio: 3.398951e-01	ci left: 5.843593e-05	ci right 8.282230e-05	k: 132	n:1890000
KS ci ratio: 1.451327e-03	ci left: 7.936589e-01	ci right 7.948121e-01	k: 1501106	n:1890000
UXS1   1890000 perm   1758 sec   (1075 perm/sec)   p_kst 7.942360e-01   p_cons 6.984127e-05   p_joint 1.206349e-04

Joint ci ratio: 2.584614e-01	ci left: 1.054211e-04	ci right 1.371883e-04	k: 229	n:1900000
Cons ci ratio: 3.386244e-01	ci left: 5.860986e-05	ci right 8.295738e-05	k: 133	n:1900000
KS ci ratio: 1.447559e-03	ci left: 7.936476e-01	ci right 7.947978e-01	k: 1509024	n:1900000
UXS1   1900000 perm   1775 sec   (1071 perm/sec)   p_kst 7.942232e-01   p_cons 7.000000e-05   p_joint 1.205263e-04

Joint ci ratio: 2.573449e-01	ci left: 1.058486e-04	ci right 1.375846e-04	k: 231	n:1910000
Cons ci ratio: 3.373679e-01	ci left: 5.878213e-05	ci right 8.309087e-05	k: 134	n:1910000
KS ci ratio: 1.443835e-03	ci left: 7.936333e-01	ci right 7.947805e-01	k: 1516936	n:1910000
UXS1   1910000 perm   1792 sec   (1066 perm/sec)   p_kst 7.942073e-01   p_cons 7.015707e-05   p_joint 1.209424e-04

Joint ci ratio: 2.573450e-01	ci left: 1.052973e-04	ci right 1.368681e-04	k: 231	n:1920000
Cons ci ratio: 3.373679e-01	ci left: 5.847597e-05	ci right 8.265811e-05	k: 134	n:1920000
KS ci ratio: 1.440001e-03	ci left: 7.936504e-01	ci right 7.947946e-01	k: 1524908	n:1920000
UXS1   1920000 perm   1809 sec   (1062 perm/sec)   p_kst 7.942229e-01   p_cons 6.979167e-05   p_joint 1.203125e-04

Joint ci ratio: 2.551546e-01	ci left: 1.066911e-04	ci right 1.383642e-04	k: 235	n:1930000
Cons ci ratio: 3.361253e-01	ci left: 5.864731e-05	ci right 8.279161e-05	k: 135	n:1930000
KS ci ratio: 1.436095e-03	ci left: 7.936907e-01	ci right 7.948318e-01	k: 1532925	n:1930000
UXS1   1930000 perm   1825 sec   (1057 perm/sec)   p_kst 7.942617e-01   p_cons 6.994819e-05   p_joint 1.217617e-04

Joint ci ratio: 2.546157e-01	ci left: 1.066237e-04	ci right 1.381994e-04	k: 236	n:1940000
Cons ci ratio: 3.348963e-01	ci left: 5.881705e-05	ci right 8.292358e-05	k: 136	n:1940000
KS ci ratio: 1.432244e-03	ci left: 7.937253e-01	ci right 7.948635e-01	k: 1540932	n:1940000
UXS1   1940000 perm   1843 sec   (1053 perm/sec)   p_kst 7.942948e-01   p_cons 7.010309e-05   p_joint 1.216495e-04

Joint ci ratio: 2.540803e-01	ci left: 1.065571e-04	ci right 1.380361e-04	k: 237	n:1950000
Cons ci ratio: 3.348964e-01	ci left: 5.851542e-05	ci right 8.249833e-05	k: 136	n:1950000
KS ci ratio: 1.428499e-03	ci left: 7.937422e-01	ci right 7.948774e-01	k: 1548905	n:1950000
UXS1   1950000 perm   1860 sec   (1049 perm/sec)   p_kst 7.943103e-01   p_cons 6.974359e-05   p_joint 1.215385e-04

Joint ci ratio: 2.535482e-01	ci left: 1.064912e-04	ci right 1.378744e-04	k: 238	n:1960000
Cons ci ratio: 3.348964e-01	ci left: 5.821687e-05	ci right 8.207743e-05	k: 136	n:1960000
KS ci ratio: 1.424942e-03	ci left: 7.937227e-01	ci right 7.948550e-01	k: 1556807	n:1960000
UXS1   1960000 perm   1877 sec   (1044 perm/sec)   p_kst 7.942893e-01   p_cons 6.938776e-05   p_joint 1.214286e-04

Joint ci ratio: 2.157708e-01	ci left: 1.494459e-04	ci right 1.860602e-04	k: 329	n:1970000
Cons ci ratio: 3.324782e-01	ci left: 5.885154e-05	ci right 8.276076e-05	k: 138	n:1970000
KS ci ratio: 1.421175e-03	ci left: 7.937577e-01	ci right 7.948871e-01	k: 1564816	n:1970000
UXS1   1970000 perm   1894 sec   (1040 perm/sec)   p_kst 7.943228e-01   p_cons 7.005076e-05   p_joint 1.670051e-04

Joint ci ratio: 2.147966e-01	ci left: 1.501246e-04	ci right 1.867172e-04	k: 332	n:1980000
Cons ci ratio: 3.324783e-01	ci left: 5.855431e-05	ci right 8.234278e-05	k: 138	n:1980000
KS ci ratio: 1.417564e-03	ci left: 7.937631e-01	ci right 7.948896e-01	k: 1572767	n:1980000
UXS1   1980000 perm   1912 sec   (1036 perm/sec)   p_kst 7.943268e-01   p_cons 6.969697e-05   p_joint 1.676768e-04

Joint ci ratio: 2.135179e-01	ci left: 1.512724e-04	ci right 1.878966e-04	k: 336	n:1990000
Cons ci ratio: 3.301118e-01	ci left: 5.918151e-05	ci right 8.301731e-05	k: 140	n:1990000
KS ci ratio: 1.414121e-03	ci left: 7.937362e-01	ci right 7.948599e-01	k: 1580654	n:1990000
UXS1   1990000 perm   1930 sec   (1031 perm/sec)   p_kst 7.942985e-01   p_cons 7.035176e-05   p_joint 1.688442e-04

Joint ci ratio: 2.128871e-01	ci left: 1.514627e-04	ci right 1.880104e-04	k: 338	n:2000000
Cons ci ratio: 3.301118e-01	ci left: 5.888560e-05	ci right 8.260222e-05	k: 140	n:2000000
KS ci ratio: 1.410611e-03	ci left: 7.937306e-01	ci right 7.948515e-01	k: 1588583	n:2000000
UXS1   2000000 perm   1948 sec   (1027 perm/sec)   p_kst 7.942915e-01   p_cons 7.000000e-05   p_joint 1.690000e-04

Joint ci ratio: 2.489048e-01	ci left: 1.080379e-04	ci right 1.392036e-04	k: 247	n:2010000
Cons ci ratio: 3.289474e-01	ci left: 5.904899e-05	ci right 8.272979e-05	k: 141	n:2010000
KS ci ratio: 1.407068e-03	ci left: 7.937390e-01	ci right 7.948571e-01	k: 1596540	n:2010000
UXS1   2010000 perm   1965 sec   (1023 perm/sec)   p_kst 7.942985e-01   p_cons 7.014925e-05   p_joint 1.228856e-04

Joint ci ratio: 2.474128e-01	ci left: 1.088958e-04	ci right 1.400918e-04	k: 250	n:2020000
Cons ci ratio: 3.289474e-01	ci left: 5.875667e-05	ci right 8.232024e-05	k: 141	n:2020000
KS ci ratio: 1.403449e-03	ci left: 7.937711e-01	ci right 7.948864e-01	k: 1604545	n:2020000
UXS1   2020000 perm   1983 sec   (1019 perm/sec)   p_kst 7.943292e-01   p_cons 6.980198e-05   p_joint 1.237624e-04

Joint ci ratio: 2.464329e-01	ci left: 1.092837e-04	ci right 1.404477e-04	k: 252	n:2030000
Cons ci ratio: 3.266550e-01	ci left: 5.937139e-05	ci right 8.298073e-05	k: 143	n:2030000
KS ci ratio: 1.400062e-03	ci left: 7.937551e-01	ci right 7.948677e-01	k: 1612453	n:2030000
UXS1   2030000 perm   2001 sec   (1014 perm/sec)   p_kst 7.943118e-01   p_cons 7.044335e-05   p_joint 1.241379e-04

Joint ci ratio: 2.459473e-01	ci left: 1.092079e-04	ci right 1.402796e-04	k: 253	n:2040000
Cons ci ratio: 3.255266e-01	ci left: 5.953042e-05	ci right 8.310414e-05	k: 144	n:2040000
KS ci ratio: 1.396629e-03	ci left: 7.937559e-01	ci right 7.948658e-01	k: 1620395	n:2040000
UXS1   2040000 perm   2019 sec   (1010 perm/sec)   p_kst 7.943113e-01   p_cons 7.058824e-05   p_joint 1.240196e-04

Joint ci ratio: 2.454646e-01	ci left: 1.091330e-04	ci right 1.401131e-04	k: 254	n:2050000
Cons ci ratio: 3.255267e-01	ci left: 5.924003e-05	ci right 8.269876e-05	k: 144	n:2050000
KS ci ratio: 1.393133e-03	ci left: 7.937773e-01	ci right 7.948843e-01	k: 1628379	n:2050000
UXS1   2050000 perm   2037 sec   (1006 perm/sec)   p_kst 7.943312e-01   p_cons 7.024390e-05   p_joint 1.239024e-04

Joint ci ratio: 2.454647e-01	ci left: 1.086032e-04	ci right 1.394330e-04	k: 254	n:2060000
Cons ci ratio: 3.255267e-01	ci left: 5.895245e-05	ci right 8.229731e-05	k: 144	n:2060000
KS ci ratio: 1.389919e-03	ci left: 7.937381e-01	ci right 7.948426e-01	k: 1636239	n:2060000
UXS1   2060000 perm   2056 sec   (1002 perm/sec)   p_kst 7.942908e-01   p_cons 6.990291e-05   p_joint 1.233010e-04

Joint ci ratio: 2.449848e-01	ci left: 1.085319e-04	ci right 1.392721e-04	k: 255	n:2070000
Cons ci ratio: 3.255268e-01	ci left: 5.866766e-05	ci right 8.189974e-05	k: 144	n:2070000
KS ci ratio: 1.386408e-03	ci left: 7.937748e-01	ci right 7.948765e-01	k: 1644255	n:2070000
UXS1   2070000 perm   2074 sec   (998 perm/sec)   p_kst 7.943261e-01   p_cons 6.956522e-05   p_joint 1.231884e-04

Joint ci ratio: 2.445077e-01	ci left: 1.084614e-04	ci right 1.391127e-04	k: 256	n:2080000
Cons ci ratio: 3.255269e-01	ci left: 5.838560e-05	ci right 8.150600e-05	k: 144	n:2080000
KS ci ratio: 1.383099e-03	ci left: 7.937698e-01	ci right 7.948688e-01	k: 1652185	n:2080000
UXS1   2080000 perm   2093 sec   (994 perm/sec)   p_kst 7.943197e-01   p_cons 6.923077e-05   p_joint 1.230769e-04

Joint ci ratio: 2.445078e-01	ci left: 1.079425e-04	ci right 1.384471e-04	k: 256	n:2090000
Cons ci ratio: 3.255269e-01	ci left: 5.810624e-05	ci right 8.111602e-05	k: 144	n:2090000
KS ci ratio: 1.379802e-03	ci left: 7.937672e-01	ci right 7.948636e-01	k: 1660120	n:2090000
UXS1   2090000 perm   2111 sec   (990 perm/sec)   p_kst 7.943158e-01   p_cons 6.889952e-05   p_joint 1.224880e-04

Joint ci ratio: 2.435619e-01	ci left: 1.083226e-04	ci right 1.387983e-04	k: 258	n:2100000
Cons ci ratio: 3.255270e-01	ci left: 5.782955e-05	ci right 8.072975e-05	k: 144	n:2100000
KS ci ratio: 1.376628e-03	ci left: 7.937412e-01	ci right 7.948351e-01	k: 1668006	n:2100000
UXS1   2100000 perm   2129 sec   (986 perm/sec)   p_kst 7.942886e-01   p_cons 6.857143e-05   p_joint 1.228571e-04

Joint ci ratio: 2.435619e-01	ci left: 1.078092e-04	ci right 1.381405e-04	k: 258	n:2110000
Cons ci ratio: 3.255270e-01	ci left: 5.755547e-05	ci right 8.034715e-05	k: 144	n:2110000
KS ci ratio: 1.373421e-03	ci left: 7.937283e-01	ci right 7.948197e-01	k: 1675919	n:2110000
UXS1   2110000 perm   2147 sec   (983 perm/sec)   p_kst 7.942744e-01   p_cons 6.824645e-05   p_joint 1.222749e-04

Joint ci ratio: 2.417025e-01	ci left: 1.090728e-04	ci right 1.394902e-04	k: 262	n:2120000
Cons ci ratio: 3.211276e-01	ci left: 5.901767e-05	ci right 8.200754e-05	k: 148	n:2120000
KS ci ratio: 1.370235e-03	ci left: 7.937161e-01	ci right 7.948048e-01	k: 1683833	n:2120000
UXS1   2120000 perm   2166 sec   (979 perm/sec)   p_kst 7.942608e-01   p_cons 6.981132e-05   p_joint 1.235849e-04

Joint ci ratio: 2.403356e-01	ci left: 1.098841e-04	ci right 1.403287e-04	k: 265	n:2130000
Cons ci ratio: 3.200553e-01	ci left: 5.917230e-05	ci right 8.212966e-05	k: 149	n:2130000
KS ci ratio: 1.366987e-03	ci left: 7.937241e-01	ci right 7.948103e-01	k: 1691790	n:2130000
UXS1   2130000 perm   2184 sec   (975 perm/sec)   p_kst 7.942676e-01   p_cons 6.995305e-05   p_joint 1.244131e-04

Joint ci ratio: 2.389915e-01	ci left: 1.106884e-04	ci right 1.411588e-04	k: 268	n:2140000
Cons ci ratio: 3.189937e-01	ci left: 5.932561e-05	ci right 8.225051e-05	k: 150	n:2140000
KS ci ratio: 1.363761e-03	ci left: 7.937321e-01	ci right 7.948157e-01	k: 1699747	n:2140000
UXS1   2140000 perm   2203 sec   (972 perm/sec)   p_kst 7.942743e-01   p_cons 7.009346e-05   p_joint 1.252336e-04

Joint ci ratio: 2.381080e-01	ci left: 1.110482e-04	ci right 1.414880e-04	k: 270	n:2150000
Cons ci ratio: 3.169019e-01	ci left: 5.990569e-05	ci right 8.287216e-05	k: 152	n:2150000
KS ci ratio: 1.360531e-03	ci left: 7.937465e-01	ci right 7.948276e-01	k: 1707718	n:2150000
UXS1   2150000 perm   2221 sec   (968 perm/sec)   p_kst 7.942874e-01   p_cons 7.069767e-05   p_joint 1.255814e-04

Joint ci ratio: 2.381080e-01	ci left: 1.105340e-04	ci right 1.408329e-04	k: 270	n:2160000
Cons ci ratio: 3.169019e-01	ci left: 5.962835e-05	ci right 8.248850e-05	k: 152	n:2160000
KS ci ratio: 1.357282e-03	ci left: 7.937710e-01	ci right 7.948495e-01	k: 1715711	n:2160000
UXS1   2160000 perm   2240 sec   (964 perm/sec)   p_kst 7.943106e-01   p_cons 7.037037e-05   p_joint 1.250000e-04

Joint ci ratio: 2.368009e-01	ci left: 1.113249e-04	ci right 1.416485e-04	k: 273	n:2170000
Cons ci ratio: 3.169020e-01	ci left: 5.935356e-05	ci right 8.210837e-05	k: 152	n:2170000
KS ci ratio: 1.354208e-03	ci left: 7.937583e-01	ci right 7.948344e-01	k: 1723624	n:2170000
UXS1   2170000 perm   2259 sec   (961 perm/sec)   p_kst 7.942968e-01   p_cons 7.004608e-05   p_joint 1.258065e-04

Joint ci ratio: 2.368009e-01	ci left: 1.108143e-04	ci right 1.409988e-04	k: 273	n:2180000
Cons ci ratio: 3.169020e-01	ci left: 5.908130e-05	ci right 8.173173e-05	k: 152	n:2180000
KS ci ratio: 1.351146e-03	ci left: 7.937481e-01	ci right 7.948217e-01	k: 1731542	n:2180000
UXS1   2180000 perm   2278 sec   (957 perm/sec)   p_kst 7.942853e-01   p_cons 6.972477e-05   p_joint 1.252294e-04

Joint ci ratio: 2.355150e-01	ci left: 1.115971e-04	ci right 1.418057e-04	k: 276	n:2190000
Cons ci ratio: 3.138399e-01	ci left: 6.007298e-05	ci right 8.283644e-05	k: 155	n:2190000
KS ci ratio: 1.348074e-03	ci left: 7.937453e-01	ci right 7.948165e-01	k: 1739476	n:2190000
UXS1   2190000 perm   2297 sec   (953 perm/sec)   p_kst 7.942813e-01   p_cons 7.077626e-05   p_joint 1.260274e-04

Joint ci ratio: 2.350911e-01	ci left: 1.115176e-04	ci right 1.416424e-04	k: 277	n:2200000
Cons ci ratio: 3.128388e-01	ci left: 6.021873e-05	ci right 8.295009e-05	k: 156	n:2200000
KS ci ratio: 1.344986e-03	ci left: 7.937516e-01	ci right 7.948203e-01	k: 1747430	n:2200000
UXS1   2200000 perm   2316 sec   (950 perm/sec)   p_kst 7.942864e-01   p_cons 7.090909e-05   p_joint 1.259091e-04

Joint ci ratio: 2.350911e-01	ci left: 1.110130e-04	ci right 1.410015e-04	k: 277	n:2210000
Cons ci ratio: 3.128389e-01	ci left: 5.994624e-05	ci right 8.257475e-05	k: 156	n:2210000
KS ci ratio: 1.341861e-03	ci left: 7.937719e-01	ci right 7.948382e-01	k: 1755415	n:2210000
UXS1   2210000 perm   2335 sec   (946 perm/sec)   p_kst 7.943054e-01   p_cons 7.058824e-05   p_joint 1.253394e-04

Joint ci ratio: 2.346695e-01	ci left: 1.109368e-04	ci right 1.408433e-04	k: 278	n:2220000
Cons ci ratio: 3.118473e-01	ci left: 6.009136e-05	ci right 8.268843e-05	k: 157	n:2220000
KS ci ratio: 1.338749e-03	ci left: 7.937943e-01	ci right 7.948581e-01	k: 1763405	n:2220000
UXS1   2220000 perm   2354 sec   (943 perm/sec)   p_kst 7.943266e-01   p_cons 7.072072e-05   p_joint 1.252252e-04

Joint ci ratio: 2.342500e-01	ci left: 1.108615e-04	ci right 1.406864e-04	k: 279	n:2230000
Cons ci ratio: 3.108651e-01	ci left: 6.023529e-05	ci right 8.280099e-05	k: 158	n:2230000
KS ci ratio: 1.335803e-03	ci left: 7.937810e-01	ci right 7.948425e-01	k: 1771316	n:2230000
UXS1   2230000 perm   2373 sec   (940 perm/sec)   p_kst 7.943121e-01   p_cons 7.085202e-05   p_joint 1.251121e-04

Joint ci ratio: 2.338329e-01	ci left: 1.107868e-04	ci right 1.405309e-04	k: 280	n:2240000
Cons ci ratio: 3.108651e-01	ci left: 5.996638e-05	ci right 8.243134e-05	k: 158	n:2240000
KS ci ratio: 1.332809e-03	ci left: 7.937844e-01	ci right 7.948435e-01	k: 1779264	n:2240000
UXS1   2240000 perm   2392 sec   (936 perm/sec)   p_kst 7.943143e-01   p_cons 7.053571e-05   p_joint 1.250000e-04

Joint ci ratio: 2.330051e-01	ci left: 1.111313e-04	ci right 1.408471e-04	k: 282	n:2250000
Cons ci ratio: 3.089282e-01	ci left: 6.051964e-05	ci right 8.302277e-05	k: 160	n:2250000
KS ci ratio: 1.329870e-03	ci left: 7.937792e-01	ci right 7.948360e-01	k: 1787193	n:2250000
UXS1   2250000 perm   2412 sec   (933 perm/sec)   p_kst 7.943080e-01   p_cons 7.111111e-05   p_joint 1.253333e-04

Joint ci ratio: 2.321861e-01	ci left: 1.114730e-04	ci right 1.411603e-04	k: 284	n:2260000
Cons ci ratio: 3.089282e-01	ci left: 6.025185e-05	ci right 8.265542e-05	k: 160	n:2260000
KS ci ratio: 1.326876e-03	ci left: 7.937923e-01	ci right 7.948467e-01	k: 1795163	n:2260000
UXS1   2260000 perm   2432 sec   (929 perm/sec)   p_kst 7.943199e-01   p_cons 7.079646e-05   p_joint 1.256637e-04

Joint ci ratio: 2.317798e-01	ci left: 1.113968e-04	ci right 1.410045e-04	k: 285	n:2270000
Cons ci ratio: 3.089283e-01	ci left: 5.998643e-05	ci right 8.229130e-05	k: 160	n:2270000
KS ci ratio: 1.323792e-03	ci left: 7.938327e-01	ci right 7.948846e-01	k: 1803195	n:2270000
UXS1   2270000 perm   2452 sec   (926 perm/sec)   p_kst 7.943590e-01   p_cons 7.048458e-05   p_joint 1.255507e-04

Joint ci ratio: 2.313757e-01	ci left: 1.113214e-04	ci right 1.408501e-04	k: 286	n:2280000
Cons ci ratio: 3.079733e-01	ci left: 6.012798e-05	ci right 8.240281e-05	k: 161	n:2280000
KS ci ratio: 1.320881e-03	ci left: 7.938349e-01	ci right 7.948846e-01	k: 1811141	n:2280000
UXS1   2280000 perm   2472 sec   (922 perm/sec)   p_kst 7.943601e-01   p_cons 7.061404e-05   p_joint 1.254386e-04

Joint ci ratio: 2.305736e-01	ci left: 1.116581e-04	ci right 1.411588e-04	k: 288	n:2290000
Cons ci ratio: 3.060895e-01	ci left: 6.067150e-05	ci right 8.298340e-05	k: 163	n:2290000
KS ci ratio: 1.318060e-03	ci left: 7.938196e-01	ci right 7.948670e-01	k: 1819047	n:2290000
UXS1   2290000 perm   2491 sec   (919 perm/sec)   p_kst 7.943437e-01   p_cons 7.117904e-05   p_joint 1.257642e-04

Joint ci ratio: 2.305737e-01	ci left: 1.111726e-04	ci right 1.405451e-04	k: 288	n:2300000
Cons ci ratio: 3.060896e-01	ci left: 6.040771e-05	ci right 8.262261e-05	k: 163	n:2300000
KS ci ratio: 1.315091e-03	ci left: 7.938458e-01	ci right 7.948909e-01	k: 1827048	n:2300000
UXS1   2300000 perm   2511 sec   (916 perm/sec)   p_kst 7.943687e-01   p_cons 7.086957e-05   p_joint 1.252174e-04

Joint ci ratio: 2.301758e-01	ci left: 1.110993e-04	ci right 1.403945e-04	k: 289	n:2310000
Cons ci ratio: 3.060896e-01	ci left: 6.014621e-05	ci right 8.226493e-05	k: 163	n:2310000
KS ci ratio: 1.312169e-03	ci left: 7.938648e-01	ci right 7.949076e-01	k: 1835033	n:2310000
UXS1   2310000 perm   2531 sec   (913 perm/sec)   p_kst 7.943866e-01   p_cons 7.056277e-05   p_joint 1.251082e-04

Joint ci ratio: 2.297800e-01	ci left: 1.110266e-04	ci right 1.402452e-04	k: 290	n:2320000
Cons ci ratio: 3.051607e-01	ci left: 6.028494e-05	ci right 8.237433e-05	k: 164	n:2320000
KS ci ratio: 1.309330e-03	ci left: 7.938682e-01	ci right 7.949087e-01	k: 1842982	n:2320000
UXS1   2320000 perm   2551 sec   (910 perm/sec)   p_kst 7.943888e-01   p_cons 7.068966e-05   p_joint 1.250000e-04

Joint ci ratio: 2.297801e-01	ci left: 1.105501e-04	ci right 1.396433e-04	k: 290	n:2330000
Cons ci ratio: 3.051607e-01	ci left: 6.002620e-05	ci right 8.202079e-05	k: 164	n:2330000
KS ci ratio: 1.306625e-03	ci left: 7.938423e-01	ci right 7.948806e-01	k: 1850863	n:2330000
UXS1   2330000 perm   2570 sec   (906 perm/sec)   p_kst 7.943618e-01   p_cons 7.038627e-05   p_joint 1.244635e-04

Joint ci ratio: 2.286046e-01	ci left: 1.112861e-04	ci right 1.404020e-04	k: 293	n:2340000
Cons ci ratio: 3.024236e-01	ci left: 6.095403e-05	ci right 8.304974e-05	k: 167	n:2340000
KS ci ratio: 1.303940e-03	ci left: 7.938157e-01	ci right 7.948519e-01	k: 1858742	n:2340000
UXS1   2340000 perm   2591 sec   (903 perm/sec)   p_kst 7.943342e-01   p_cons 7.136752e-05   p_joint 1.252137e-04

Joint ci ratio: 2.278310e-01	ci left: 1.116150e-04	ci right 1.407042e-04	k: 295	n:2350000
Cons ci ratio: 3.015276e-01	ci left: 6.108795e-05	ci right 8.315401e-05	k: 168	n:2350000
KS ci ratio: 1.301053e-03	ci left: 7.938444e-01	ci right 7.948783e-01	k: 1866750	n:2350000
UXS1   2350000 perm   2611 sec   (900 perm/sec)   p_kst 7.943617e-01   p_cons 7.148936e-05   p_joint 1.255319e-04

Joint ci ratio: 2.278310e-01	ci left: 1.111420e-04	ci right 1.401080e-04	k: 295	n:2360000
Cons ci ratio: 3.015276e-01	ci left: 6.082910e-05	ci right 8.280167e-05	k: 168	n:2360000
KS ci ratio: 1.298307e-03	ci left: 7.938423e-01	ci right 7.948740e-01	k: 1874686	n:2360000
UXS1   2360000 perm   2631 sec   (897 perm/sec)   p_kst 7.943585e-01   p_cons 7.118644e-05   p_joint 1.250000e-04

Joint ci ratio: 2.270652e-01	ci left: 1.114689e-04	ci right 1.404087e-04	k: 297	n:2370000
Cons ci ratio: 2.997590e-01	ci left: 6.135268e-05	ci right 8.335963e-05	k: 170	n:2370000
KS ci ratio: 1.295470e-03	ci left: 7.938672e-01	ci right 7.948967e-01	k: 1882686	n:2370000
UXS1   2370000 perm   2652 sec   (894 perm/sec)   p_kst 7.943823e-01   p_cons 7.172996e-05   p_joint 1.253165e-04

Joint ci ratio: 2.266852e-01	ci left: 1.113968e-04	ci right 1.402628e-04	k: 298	n:2380000
Cons ci ratio: 2.988863e-01	ci left: 6.148351e-05	ci right 8.346101e-05	k: 171	n:2380000
KS ci ratio: 1.292682e-03	ci left: 7.938843e-01	ci right 7.949116e-01	k: 1890668	n:2380000
UXS1   2380000 perm   2672 sec   (891 perm/sec)   p_kst 7.943983e-01   p_cons 7.184874e-05   p_joint 1.252101e-04

Joint ci ratio: 2.255564e-01	ci left: 1.121149e-04	ci right 1.410021e-04	k: 301	n:2390000
Cons ci ratio: 2.971636e-01	ci left: 6.200052e-05	ci right 8.401099e-05	k: 173	n:2390000
KS ci ratio: 1.289992e-03	ci left: 7.938812e-01	ci right 7.949064e-01	k: 1898602	n:2390000
UXS1   2390000 perm   2693 sec   (888 perm/sec)   p_kst 7.943941e-01   p_cons 7.238494e-05   p_joint 1.259414e-04

Joint ci ratio: 2.251839e-01	ci left: 1.120409e-04	ci right 1.408548e-04	k: 302	n:2400000
Cons ci ratio: 2.963133e-01	ci left: 6.212784e-05	ci right 8.410854e-05	k: 174	n:2400000
KS ci ratio: 1.287293e-03	ci left: 7.938844e-01	ci right 7.949074e-01	k: 1906551	n:2400000
UXS1   2400000 perm   2714 sec   (884 perm/sec)   p_kst 7.943963e-01   p_cons 7.250000e-05   p_joint 1.258333e-04

Joint ci ratio: 2.251839e-01	ci left: 1.115760e-04	ci right 1.402703e-04	k: 302	n:2410000
Cons ci ratio: 2.963133e-01	ci left: 6.187005e-05	ci right 8.375954e-05	k: 174	n:2410000
KS ci ratio: 1.284613e-03	ci left: 7.938871e-01	ci right 7.949080e-01	k: 1914499	n:2410000
UXS1   2410000 perm   2735 sec   (881 perm/sec)   p_kst 7.943979e-01   p_cons 7.219917e-05   p_joint 1.253112e-04

Joint ci ratio: 2.251840e-01	ci left: 1.111149e-04	ci right 1.396907e-04	k: 302	n:2420000
Cons ci ratio: 2.963134e-01	ci left: 6.161439e-05	ci right 8.341343e-05	k: 174	n:2420000
KS ci ratio: 1.281954e-03	ci left: 7.938886e-01	ci right 7.949074e-01	k: 1922444	n:2420000
UXS1   2420000 perm   2756 sec   (878 perm/sec)   p_kst 7.943983e-01   p_cons 7.190083e-05   p_joint 1.247934e-04

Joint ci ratio: 2.248133e-01	ci left: 1.110460e-04	ci right 1.395505e-04	k: 303	n:2430000
Cons ci ratio: 2.963134e-01	ci left: 6.136083e-05	ci right 8.307017e-05	k: 174	n:2430000
KS ci ratio: 1.279245e-03	ci left: 7.939074e-01	ci right 7.949240e-01	k: 1930431	n:2430000
UXS1   2430000 perm   2776 sec   (875 perm/sec)   p_kst 7.944160e-01   p_cons 7.160494e-05   p_joint 1.246914e-04

Joint ci ratio: 2.244445e-01	ci left: 1.109776e-04	ci right 1.394114e-04	k: 304	n:2440000
Cons ci ratio: 2.954704e-01	ci left: 6.148877e-05	ci right 8.316988e-05	k: 175	n:2440000
KS ci ratio: 1.276542e-03	ci left: 7.939285e-01	ci right 7.949430e-01	k: 1938424	n:2440000
UXS1   2440000 perm   2798 sec   (872 perm/sec)   p_kst 7.944361e-01   p_cons 7.172131e-05   p_joint 1.245902e-04

Joint ci ratio: 2.240774e-01	ci left: 1.109099e-04	ci right 1.392734e-04	k: 305	n:2450000
Cons ci ratio: 2.946345e-01	ci left: 6.161575e-05	ci right 8.326870e-05	k: 176	n:2450000
KS ci ratio: 1.274062e-03	ci left: 7.938967e-01	ci right 7.949092e-01	k: 1946288	n:2450000
UXS1   2450000 perm   2818 sec   (869 perm/sec)   p_kst 7.944033e-01   p_cons 7.183673e-05   p_joint 1.244898e-04

Joint ci ratio: 2.233487e-01	ci left: 1.112265e-04	ci right 1.395658e-04	k: 307	n:2460000
Cons ci ratio: 2.938057e-01	ci left: 6.174179e-05	ci right 8.336663e-05	k: 177	n:2460000
KS ci ratio: 1.271396e-03	ci left: 7.939168e-01	ci right 7.949272e-01	k: 1954279	n:2460000
UXS1   2460000 perm   2840 sec   (866 perm/sec)   p_kst 7.944224e-01   p_cons 7.195122e-05   p_joint 1.247967e-04

Joint ci ratio: 2.229870e-01	ci left: 1.111584e-04	ci right 1.394282e-04	k: 308	n:2470000
Cons ci ratio: 2.938058e-01	ci left: 6.149182e-05	ci right 8.302911e-05	k: 177	n:2470000
KS ci ratio: 1.268913e-03	ci left: 7.938938e-01	ci right 7.949022e-01	k: 1962164	n:2470000
UXS1   2470000 perm   2860 sec   (863 perm/sec)   p_kst 7.943984e-01   p_cons 7.165992e-05   p_joint 1.246964e-04

Joint ci ratio: 2.229871e-01	ci left: 1.107102e-04	ci right 1.388660e-04	k: 308	n:2480000
Cons ci ratio: 2.938058e-01	ci left: 6.124387e-05	ci right 8.269432e-05	k: 177	n:2480000
KS ci ratio: 1.266325e-03	ci left: 7.939017e-01	ci right 7.949081e-01	k: 1970125	n:2480000
UXS1   2480000 perm   2882 sec   (861 perm/sec)   p_kst 7.944052e-01   p_cons 7.137097e-05   p_joint 1.241935e-04

Joint ci ratio: 2.226271e-01	ci left: 1.106448e-04	ci right 1.387323e-04	k: 309	n:2490000
Cons ci ratio: 2.938059e-01	ci left: 6.099791e-05	ci right 8.236222e-05	k: 177	n:2490000
KS ci ratio: 1.263870e-03	ci left: 7.938794e-01	ci right 7.948838e-01	k: 1978011	n:2490000
UXS1   2490000 perm   2903 sec   (858 perm/sec)   p_kst 7.943819e-01   p_cons 7.108434e-05   p_joint 1.240964e-04

Joint ci ratio: 2.212045e-01	ci left: 1.117133e-04	ci right 1.398661e-04	k: 313	n:2500000
Cons ci ratio: 2.921690e-01	ci left: 6.149513e-05	ci right 8.289139e-05	k: 179	n:2500000
KS ci ratio: 1.261380e-03	ci left: 7.938701e-01	ci right 7.948725e-01	k: 1985929	n:2500000
UXS1   2500000 perm   2925 sec   (855 perm/sec)   p_kst 7.943716e-01   p_cons 7.160000e-05   p_joint 1.252000e-04

Joint ci ratio: 2.208531e-01	ci left: 1.116445e-04	ci right 1.397293e-04	k: 314	n:2510000
Cons ci ratio: 2.913607e-01	ci left: 6.161938e-05	ci right 8.298863e-05	k: 180	n:2510000
KS ci ratio: 1.258893e-03	ci left: 7.938636e-01	ci right 7.948640e-01	k: 1993854	n:2510000
UXS1   2510000 perm   2947 sec   (852 perm/sec)   p_kst 7.943641e-01   p_cons 7.171315e-05   p_joint 1.250996e-04

Joint ci ratio: 2.208531e-01	ci left: 1.112015e-04	ci right 1.391748e-04	k: 314	n:2520000
Cons ci ratio: 2.913608e-01	ci left: 6.137486e-05	ci right 8.265931e-05	k: 180	n:2520000
KS ci ratio: 1.256321e-03	ci left: 7.938834e-01	ci right 7.948818e-01	k: 2001845	n:2520000
UXS1   2520000 perm   2969 sec   (849 perm/sec)   p_kst 7.943829e-01   p_cons 7.142857e-05   p_joint 1.246032e-04

Joint ci ratio: 2.205034e-01	ci left: 1.111354e-04	ci right 1.390418e-04	k: 315	n:2530000
Cons ci ratio: 2.905592e-01	ci left: 6.149869e-05	ci right 8.275661e-05	k: 181	n:2530000
KS ci ratio: 1.253908e-03	ci left: 7.938655e-01	ci right 7.948619e-01	k: 2009741	n:2530000
UXS1   2530000 perm   2991 sec   (846 perm/sec)   p_kst 7.943640e-01   p_cons 7.154150e-05   p_joint 1.245059e-04

Joint ci ratio: 2.198089e-01	ci left: 1.114418e-04	ci right 1.393252e-04	k: 317	n:2540000
Cons ci ratio: 2.889757e-01	ci left: 6.198675e-05	ci right 8.327527e-05	k: 183	n:2540000
KS ci ratio: 1.251440e-03	ci left: 7.938658e-01	ci right 7.948603e-01	k: 2017683	n:2540000
UXS1   2540000 perm   3013 sec   (843 perm/sec)   p_kst 7.943634e-01   p_cons 7.204724e-05   p_joint 1.248031e-04

Joint ci ratio: 2.198089e-01	ci left: 1.110048e-04	ci right 1.387788e-04	k: 317	n:2550000
Cons ci ratio: 2.889758e-01	ci left: 6.174366e-05	ci right 8.294870e-05	k: 183	n:2550000
KS ci ratio: 1.249007e-03	ci left: 7.938607e-01	ci right 7.948532e-01	k: 2025611	n:2550000
UXS1   2550000 perm   3035 sec   (840 perm/sec)   p_kst 7.943573e-01   p_cons 7.176471e-05   p_joint 1.243137e-04

Joint ci ratio: 2.191209e-01	ci left: 1.113095e-04	ci right 1.390608e-04	k: 319	n:2560000
Cons ci ratio: 2.889758e-01	ci left: 6.150247e-05	ci right 8.262468e-05	k: 183	n:2560000
KS ci ratio: 1.246545e-03	ci left: 7.938669e-01	ci right 7.948575e-01	k: 2033568	n:2560000
UXS1   2560000 perm   3057 sec   (838 perm/sec)   p_kst 7.943625e-01   p_cons 7.148438e-05   p_joint 1.246094e-04

Joint ci ratio: 2.187794e-01	ci left: 1.112442e-04	ci right 1.389301e-04	k: 320	n:2570000
Cons ci ratio: 2.889758e-01	ci left: 6.126316e-05	ci right 8.230319e-05	k: 183	n:2570000
KS ci ratio: 1.244121e-03	ci left: 7.938668e-01	ci right 7.948555e-01	k: 2041509	n:2570000
UXS1   2570000 perm   3079 sec   (835 perm/sec)   p_kst 7.943615e-01   p_cons 7.120623e-05   p_joint 1.245136e-04

Joint ci ratio: 2.187794e-01	ci left: 1.108130e-04	ci right 1.383916e-04	k: 320	n:2580000
Cons ci ratio: 2.889759e-01	ci left: 6.102571e-05	ci right 8.198418e-05	k: 183	n:2580000
KS ci ratio: 1.241738e-03	ci left: 7.938598e-01	ci right 7.948465e-01	k: 2049432	n:2580000
UXS1   2580000 perm   3101 sec   (832 perm/sec)   p_kst 7.943535e-01   p_cons 7.093023e-05   p_joint 1.240310e-04

Joint ci ratio: 2.177641e-01	ci left: 1.114801e-04	ci right 1.390788e-04	k: 323	n:2590000
Cons ci ratio: 2.881938e-01	ci left: 6.114824e-05	ci right 8.208161e-05	k: 184	n:2590000
KS ci ratio: 1.239315e-03	ci left: 7.938671e-01	ci right 7.948519e-01	k: 2057392	n:2590000
UXS1   2590000 perm   3123 sec   (829 perm/sec)   p_kst 7.943598e-01   p_cons 7.104247e-05   p_joint 1.247104e-04

Joint ci ratio: 2.174288e-01	ci left: 1.114150e-04	ci right 1.389495e-04	k: 324	n:2600000
Cons ci ratio: 2.874180e-01	ci left: 6.126991e-05	ci right 8.217821e-05	k: 185	n:2600000
KS ci ratio: 1.236893e-03	ci left: 7.938774e-01	ci right 7.948604e-01	k: 2065360	n:2600000
UXS1   2600000 perm   3145 sec   (827 perm/sec)   p_kst 7.943692e-01   p_cons 7.115385e-05   p_joint 1.246154e-04

Joint ci ratio: 2.174289e-01	ci left: 1.109881e-04	ci right 1.384171e-04	k: 324	n:2610000
Cons ci ratio: 2.874180e-01	ci left: 6.103516e-05	ci right 8.186336e-05	k: 185	n:2610000
KS ci ratio: 1.234492e-03	ci left: 7.938862e-01	ci right 7.948672e-01	k: 2073324	n:2610000
UXS1   2610000 perm   3168 sec   (824 perm/sec)   p_kst 7.943770e-01   p_cons 7.088123e-05   p_joint 1.241379e-04

Joint ci ratio: 2.174289e-01	ci left: 1.105645e-04	ci right 1.378888e-04	k: 324	n:2620000
Cons ci ratio: 2.874181e-01	ci left: 6.080220e-05	ci right 8.155090e-05	k: 185	n:2620000
KS ci ratio: 1.232070e-03	ci left: 7.939040e-01	ci right 7.948831e-01	k: 2081312	n:2620000
UXS1   2620000 perm   3190 sec   (821 perm/sec)   p_kst 7.943939e-01   p_cons 7.061069e-05   p_joint 1.236641e-04

Joint ci ratio: 2.174290e-01	ci left: 1.101441e-04	ci right 1.373645e-04	k: 324	n:2630000
Cons ci ratio: 2.874181e-01	ci left: 6.057101e-05	ci right 8.124083e-05	k: 185	n:2630000
KS ci ratio: 1.229796e-03	ci left: 7.938863e-01	ci right 7.948636e-01	k: 2089207	n:2630000
UXS1   2630000 perm   3213 sec   (819 perm/sec)   p_kst 7.943753e-01   p_cons 7.034221e-05   p_joint 1.231939e-04

Joint ci ratio: 2.174291e-01	ci left: 1.097269e-04	ci right 1.368442e-04	k: 324	n:2640000
Cons ci ratio: 2.874182e-01	ci left: 6.034158e-05	ci right 8.093310e-05	k: 185	n:2640000
KS ci ratio: 1.227484e-03	ci left: 7.938820e-01	ci right 7.948575e-01	k: 2097137	n:2640000
UXS1   2640000 perm   3236 sec   (816 perm/sec)   p_kst 7.943701e-01   p_cons 7.007576e-05   p_joint 1.227273e-04

Joint ci ratio: 2.167631e-01	ci left: 1.100265e-04	ci right 1.371235e-04	k: 326	n:2650000
Cons ci ratio: 2.858852e-01	ci left: 6.081434e-05	ci right 8.143651e-05	k: 187	n:2650000
KS ci ratio: 1.225232e-03	ci left: 7.938653e-01	ci right 7.948389e-01	k: 2105034	n:2650000
UXS1   2650000 perm   3259 sec   (813 perm/sec)   p_kst 7.943525e-01   p_cons 7.056604e-05   p_joint 1.230189e-04

Joint ci ratio: 2.164324e-01	ci left: 1.099684e-04	ci right 1.370043e-04	k: 327	n:2660000
Cons ci ratio: 2.858852e-01	ci left: 6.058571e-05	ci right 8.113036e-05	k: 187	n:2660000
KS ci ratio: 1.222856e-03	ci left: 7.938852e-01	ci right 7.948570e-01	k: 2113028	n:2660000
UXS1   2660000 perm   3281 sec   (811 perm/sec)   p_kst 7.943714e-01   p_cons 7.030075e-05   p_joint 1.229323e-04

Joint ci ratio: 2.164325e-01	ci left: 1.095565e-04	ci right 1.364911e-04	k: 327	n:2670000
Cons ci ratio: 2.858853e-01	ci left: 6.035880e-05	ci right 8.082651e-05	k: 187	n:2670000
KS ci ratio: 1.220616e-03	ci left: 7.938720e-01	ci right 7.948420e-01	k: 2120934	n:2670000
UXS1   2670000 perm   3305 sec   (808 perm/sec)   p_kst 7.943573e-01   p_cons 7.003745e-05   p_joint 1.224719e-04

Joint ci ratio: 2.154493e-01	ci left: 1.102066e-04	ci right 1.371617e-04	k: 330	n:2680000
Cons ci ratio: 2.843766e-01	ci left: 6.082649e-05	ci right 8.132440e-05	k: 189	n:2680000
KS ci ratio: 1.218384e-03	ci left: 7.938604e-01	ci right 7.948285e-01	k: 2128844	n:2680000
UXS1   2680000 perm   3328 sec   (805 perm/sec)   p_kst 7.943448e-01   p_cons 7.052239e-05   p_joint 1.231343e-04

Joint ci ratio: 2.148013e-01	ci left: 1.105004e-04	ci right 1.374353e-04	k: 332	n:2690000
Cons ci ratio: 2.836311e-01	ci left: 6.094564e-05	ci right 8.142023e-05	k: 190	n:2690000
KS ci ratio: 1.216083e-03	ci left: 7.938704e-01	ci right 7.948368e-01	k: 2136812	n:2690000
UXS1   2690000 perm   3351 sec   (803 perm/sec)   p_kst 7.943539e-01   p_cons 7.063197e-05   p_joint 1.234201e-04

Joint ci ratio: 2.144795e-01	ci left: 1.104416e-04	ci right 1.373165e-04	k: 333	n:2700000
Cons ci ratio: 2.836312e-01	ci left: 6.071992e-05	ci right 8.111868e-05	k: 190	n:2700000
KS ci ratio: 1.213754e-03	ci left: 7.938915e-01	ci right 7.948560e-01	k: 2144810	n:2700000
UXS1   2700000 perm   3374 sec   (800 perm/sec)   p_kst 7.943741e-01   p_cons 7.037037e-05   p_joint 1.233333e-04

Joint ci ratio: 2.141592e-01	ci left: 1.103832e-04	ci right 1.371986e-04	k: 334	n:2710000
Cons ci ratio: 2.836312e-01	ci left: 6.049586e-05	ci right 8.081935e-05	k: 190	n:2710000
KS ci ratio: 1.211476e-03	ci left: 7.939021e-01	ci right 7.948648e-01	k: 2152780	n:2710000
UXS1   2710000 perm   3397 sec   (798 perm/sec)   p_kst 7.943838e-01   p_cons 7.011070e-05   p_joint 1.232472e-04

Joint ci ratio: 2.135227e-01	ci left: 1.106733e-04	ci right 1.374688e-04	k: 336	n:2720000
Cons ci ratio: 2.836312e-01	ci left: 6.027345e-05	ci right 8.052222e-05	k: 190	n:2720000
KS ci ratio: 1.209336e-03	ci left: 7.938791e-01	ci right 7.948401e-01	k: 2160659	n:2720000
UXS1   2720000 perm   3419 sec   (795 perm/sec)   p_kst 7.943599e-01   p_cons 6.985294e-05   p_joint 1.235294e-04

Joint ci ratio: 2.135228e-01	ci left: 1.102679e-04	ci right 1.369653e-04	k: 336	n:2730000
Cons ci ratio: 2.836313e-01	ci left: 6.005266e-05	ci right 8.022727e-05	k: 190	n:2730000
KS ci ratio: 1.207099e-03	ci left: 7.938853e-01	ci right 7.948445e-01	k: 2168617	n:2730000
UXS1   2730000 perm   3442 sec   (793 perm/sec)   p_kst 7.943652e-01   p_cons 6.959707e-05   p_joint 1.230769e-04

Joint ci ratio: 2.135228e-01	ci left: 1.098655e-04	ci right 1.364654e-04	k: 336	n:2740000
Cons ci ratio: 2.836313e-01	ci left: 5.983349e-05	ci right 7.993447e-05	k: 190	n:2740000
KS ci ratio: 1.204891e-03	ci left: 7.938870e-01	ci right 7.948445e-01	k: 2176563	n:2740000
UXS1   2740000 perm   3466 sec   (791 perm/sec)   p_kst 7.943661e-01   p_cons 6.934307e-05   p_joint 1.226277e-04

Joint ci ratio: 2.132067e-01	ci left: 1.098102e-04	ci right 1.363522e-04	k: 337	n:2750000
Cons ci ratio: 2.828917e-01	ci left: 5.995372e-05	ci right 8.003320e-05	k: 191	n:2750000
KS ci ratio: 1.202780e-03	ci left: 7.938658e-01	ci right 7.948216e-01	k: 2184446	n:2750000
UXS1   2750000 perm   3489 sec   (788 perm/sec)   p_kst 7.943440e-01   p_cons 6.945455e-05   p_joint 1.225455e-04

Joint ci ratio: 2.132068e-01	ci left: 1.094123e-04	ci right 1.358582e-04	k: 337	n:2760000
Cons ci ratio: 2.828917e-01	ci left: 5.973650e-05	ci right 7.974322e-05	k: 191	n:2760000
KS ci ratio: 1.200658e-03	ci left: 7.938506e-01	ci right 7.948046e-01	k: 2192345	n:2760000
UXS1   2760000 perm   3513 sec   (786 perm/sec)   p_kst 7.943279e-01   p_cons 6.920290e-05   p_joint 1.221014e-04

Joint ci ratio: 2.128921e-01	ci left: 1.093591e-04	ci right 1.357479e-04	k: 338	n:2770000
Cons ci ratio: 2.828918e-01	ci left: 5.952084e-05	ci right 7.945534e-05	k: 191	n:2770000
KS ci ratio: 1.198452e-03	ci left: 7.938614e-01	ci right 7.948138e-01	k: 2200316	n:2770000
UXS1   2770000 perm   3536 sec   (783 perm/sec)   p_kst 7.943379e-01   p_cons 6.895307e-05   p_joint 1.220217e-04

Joint ci ratio: 2.128922e-01	ci left: 1.089657e-04	ci right 1.352596e-04	k: 338	n:2780000
Cons ci ratio: 2.828918e-01	ci left: 5.930674e-05	ci right 7.916953e-05	k: 191	n:2780000
KS ci ratio: 1.196256e-03	ci left: 7.938730e-01	ci right 7.948235e-01	k: 2208289	n:2780000
UXS1   2780000 perm   3560 sec   (781 perm/sec)   p_kst 7.943486e-01   p_cons 6.870504e-05   p_joint 1.215827e-04

Joint ci ratio: 2.125789e-01	ci left: 1.089145e-04	ci right 1.351523e-04	k: 339	n:2790000
Cons ci ratio: 2.821580e-01	ci left: 5.942720e-05	ci right 7.926952e-05	k: 192	n:2790000
KS ci ratio: 1.194219e-03	ci left: 7.938439e-01	ci right 7.947928e-01	k: 2216149	n:2790000
UXS1   2790000 perm   3583 sec   (779 perm/sec)   p_kst 7.943186e-01   p_cons 6.881720e-05   p_joint 1.215054e-04

Joint ci ratio: 2.122669e-01	ci left: 1.088636e-04	ci right 1.350458e-04	k: 340	n:2800000
Cons ci ratio: 2.814298e-01	ci left: 5.954687e-05	ci right 7.936873e-05	k: 193	n:2800000
KS ci ratio: 1.192107e-03	ci left: 7.938386e-01	ci right 7.947858e-01	k: 2224075	n:2800000
UXS1   2800000 perm   3607 sec   (776 perm/sec)   p_kst 7.943125e-01   p_cons 6.892857e-05   p_joint 1.214286e-04

Joint ci ratio: 2.113393e-01	ci left: 1.094872e-04	ci right 1.356893e-04	k: 343	n:2810000
Cons ci ratio: 2.799902e-01	ci left: 5.999660e-05	ci right 7.984799e-05	k: 195	n:2810000
KS ci ratio: 1.189974e-03	ci left: 7.938422e-01	ci right 7.947878e-01	k: 2232026	n:2810000
UXS1   2810000 perm   3631 sec   (774 perm/sec)   p_kst 7.943153e-01   p_cons 6.939502e-05   p_joint 1.220641e-04

Joint ci ratio: 2.107275e-01	ci left: 1.097707e-04	ci right 1.359548e-04	k: 345	n:2820000
Cons ci ratio: 2.785724e-01	ci left: 6.044341e-05	ci right 8.032360e-05	k: 197	n:2820000
KS ci ratio: 1.187877e-03	ci left: 7.938391e-01	ci right 7.947830e-01	k: 2239958	n:2820000
UXS1   2820000 perm   3656 sec   (771 perm/sec)   p_kst 7.943113e-01   p_cons 6.985816e-05   p_joint 1.223404e-04

Joint ci ratio: 2.104237e-01	ci left: 1.097175e-04	ci right 1.358464e-04	k: 346	n:2830000
Cons ci ratio: 2.785725e-01	ci left: 6.022983e-05	ci right 8.003977e-05	k: 197	n:2830000
KS ci ratio: 1.185781e-03	ci left: 7.938385e-01	ci right 7.947807e-01	k: 2247897	n:2830000
UXS1   2830000 perm   3680 sec   (769 perm/sec)   p_kst 7.943099e-01   p_cons 6.961131e-05   p_joint 1.222615e-04

Joint ci ratio: 2.104237e-01	ci left: 1.093312e-04	ci right 1.353680e-04	k: 346	n:2840000
Cons ci ratio: 2.785725e-01	ci left: 6.001775e-05	ci right 7.975794e-05	k: 197	n:2840000
KS ci ratio: 1.183659e-03	ci left: 7.938484e-01	ci right 7.947890e-01	k: 2255866	n:2840000
UXS1   2840000 perm   3704 sec   (767 perm/sec)   p_kst 7.943190e-01   p_cons 6.936620e-05   p_joint 1.218310e-04

Joint ci ratio: 2.095199e-01	ci left: 1.099449e-04	ci right 1.360010e-04	k: 349	n:2850000
Cons ci ratio: 2.764857e-01	ci left: 6.078655e-05	ci right 8.060378e-05	k: 200	n:2850000
KS ci ratio: 1.181644e-03	ci left: 7.938316e-01	ci right 7.947706e-01	k: 2263759	n:2850000
UXS1   2850000 perm   3730 sec   (764 perm/sec)   p_kst 7.943014e-01   p_cons 7.017544e-05   p_joint 1.224561e-04

Joint ci ratio: 2.092212e-01	ci left: 1.098918e-04	ci right 1.358934e-04	k: 350	n:2860000
Cons ci ratio: 2.758004e-01	ci left: 6.089945e-05	ci right 8.069575e-05	k: 201	n:2860000
KS ci ratio: 1.179463e-03	ci left: 7.938640e-01	ci right 7.948012e-01	k: 2271792	n:2860000
UXS1   2860000 perm   3755 sec   (762 perm/sec)   p_kst 7.943329e-01   p_cons 7.027972e-05   p_joint 1.223776e-04

Joint ci ratio: 2.083328e-01	ci left: 1.104995e-04	ci right 1.365197e-04	k: 353	n:2870000
Cons ci ratio: 2.737749e-01	ci left: 6.166054e-05	ci right 8.153171e-05	k: 204	n:2870000
KS ci ratio: 1.177349e-03	ci left: 7.938807e-01	ci right 7.948163e-01	k: 2279781	n:2870000
UXS1   2870000 perm   3780 sec   (759 perm/sec)   p_kst 7.943488e-01   p_cons 7.108014e-05   p_joint 1.229965e-04

Joint ci ratio: 2.074555e-01	ci left: 1.111033e-04	ci right 1.371415e-04	k: 356	n:2880000
Cons ci ratio: 2.737749e-01	ci left: 6.144644e-05	ci right 8.124862e-05	k: 204	n:2880000
KS ci ratio: 1.175271e-03	ci left: 7.938904e-01	ci right 7.948243e-01	k: 2287750	n:2880000
UXS1   2880000 perm   3804 sec   (757 perm/sec)   p_kst 7.943576e-01   p_cons 7.083333e-05   p_joint 1.236111e-04

Joint ci ratio: 2.071656e-01	ci left: 1.110469e-04	ci right 1.370310e-04	k: 357	n:2890000
Cons ci ratio: 2.737749e-01	ci left: 6.123383e-05	ci right 8.096748e-05	k: 204	n:2890000
KS ci ratio: 1.173270e-03	ci left: 7.938816e-01	ci right 7.948140e-01	k: 2295666	n:2890000
UXS1   2890000 perm   3829 sec   (755 perm/sec)   p_kst 7.943481e-01   p_cons 7.058824e-05   p_joint 1.235294e-04

Joint ci ratio: 2.068768e-01	ci left: 1.109909e-04	ci right 1.369211e-04	k: 358	n:2900000
Cons ci ratio: 2.731096e-01	ci left: 6.134386e-05	ci right 8.105669e-05	k: 205	n:2900000
KS ci ratio: 1.171275e-03	ci left: 7.938743e-01	ci right 7.948051e-01	k: 2303586	n:2900000
UXS1   2900000 perm   3854 sec   (752 perm/sec)   p_kst 7.943400e-01   p_cons 7.068966e-05   p_joint 1.234483e-04

Joint ci ratio: 2.063030e-01	ci left: 1.112613e-04	ci right 1.371734e-04	k: 360	n:2910000
Cons ci ratio: 2.724491e-01	ci left: 6.145320e-05	ci right 8.114523e-05	k: 206	n:2910000
KS ci ratio: 1.169207e-03	ci left: 7.938901e-01	ci right 7.948192e-01	k: 2311573	n:2910000
UXS1   2910000 perm   3879 sec   (750 perm/sec)   p_kst 7.943550e-01   p_cons 7.079038e-05   p_joint 1.237113e-04

Joint ci ratio: 2.060178e-01	ci left: 1.112050e-04	ci right 1.370637e-04	k: 361	n:2920000
Cons ci ratio: 2.724491e-01	ci left: 6.124275e-05	ci right 8.086734e-05	k: 206	n:2920000
KS ci ratio: 1.167186e-03	ci left: 7.938959e-01	ci right 7.948234e-01	k: 2319531	n:2920000
UXS1   2920000 perm   3905 sec   (748 perm/sec)   p_kst 7.943599e-01   p_cons 7.054795e-05   p_joint 1.236301e-04

Joint ci ratio: 2.060179e-01	ci left: 1.108255e-04	ci right 1.365959e-04	k: 361	n:2930000
Cons ci ratio: 2.724492e-01	ci left: 6.103373e-05	ci right 8.059134e-05	k: 206	n:2930000
KS ci ratio: 1.165189e-03	ci left: 7.938975e-01	ci right 7.948234e-01	k: 2327477	n:2930000
UXS1   2930000 perm   3930 sec   (746 perm/sec)   p_kst 7.943608e-01   p_cons 7.030717e-05   p_joint 1.232082e-04

Joint ci ratio: 2.054511e-01	ci left: 1.110937e-04	ci right 1.368466e-04	k: 363	n:2940000
Cons ci ratio: 2.711424e-01	ci left: 6.146005e-05	ci right 8.104374e-05	k: 208	n:2940000
KS ci ratio: 1.163191e-03	ci left: 7.939025e-01	ci right 7.948268e-01	k: 2335433	n:2940000
UXS1   2940000 perm   3956 sec   (743 perm/sec)   p_kst 7.943650e-01   p_cons 7.074830e-05   p_joint 1.234694e-04

Joint ci ratio: 2.040543e-01	ci left: 1.123252e-04	ci right 1.381644e-04	k: 368	n:2950000
Cons ci ratio: 2.704960e-01	ci left: 6.156768e-05	ci right 8.113096e-05	k: 209	n:2950000
KS ci ratio: 1.161304e-03	ci left: 7.938790e-01	ci right 7.948018e-01	k: 2343305	n:2950000
UXS1   2950000 perm   3981 sec   (741 perm/sec)   p_kst 7.943407e-01   p_cons 7.084746e-05   p_joint 1.247458e-04

Joint ci ratio: 2.037783e-01	ci left: 1.122663e-04	ci right 1.380527e-04	k: 369	n:2960000
Cons ci ratio: 2.698543e-01	ci left: 6.167464e-05	ci right 8.121753e-05	k: 210	n:2960000
KS ci ratio: 1.159352e-03	ci left: 7.938766e-01	ci right 7.947978e-01	k: 2351239	n:2960000
UXS1   2960000 perm   4007 sec   (739 perm/sec)   p_kst 7.943375e-01   p_cons 7.094595e-05   p_joint 1.246622e-04

Joint ci ratio: 2.035035e-01	ci left: 1.122078e-04	ci right 1.379417e-04	k: 370	n:2970000
Cons ci ratio: 2.692171e-01	ci left: 6.178093e-05	ci right 8.130347e-05	k: 211	n:2970000
KS ci ratio: 1.157400e-03	ci left: 7.938769e-01	ci right 7.947966e-01	k: 2359181	n:2970000
UXS1   2970000 perm   4033 sec   (736 perm/sec)   p_kst 7.943370e-01   p_cons 7.104377e-05   p_joint 1.245791e-04

Joint ci ratio: 2.035036e-01	ci left: 1.118313e-04	ci right 1.374788e-04	k: 370	n:2980000
Cons ci ratio: 2.692171e-01	ci left: 6.157361e-05	ci right 8.103064e-05	k: 211	n:2980000
KS ci ratio: 1.155443e-03	ci left: 7.938816e-01	ci right 7.947997e-01	k: 2367136	n:2980000
UXS1   2980000 perm   4059 sec   (734 perm/sec)   p_kst 7.943409e-01   p_cons 7.080537e-05   p_joint 1.241611e-04

Joint ci ratio: 2.032299e-01	ci left: 1.117747e-04	ci right 1.373705e-04	k: 371	n:2990000
Cons ci ratio: 2.685844e-01	ci left: 6.167958e-05	ci right 8.111657e-05	k: 212	n:2990000
KS ci ratio: 1.153465e-03	ci left: 7.938949e-01	ci right 7.948115e-01	k: 2375117	n:2990000
UXS1   2990000 perm   4085 sec   (732 perm/sec)   p_kst 7.943535e-01   p_cons 7.090301e-05   p_joint 1.240803e-04

Joint ci ratio: 2.032299e-01	ci left: 1.114021e-04	ci right 1.369126e-04	k: 371	n:3000000
Cons ci ratio: 2.685844e-01	ci left: 6.147398e-05	ci right 8.084619e-05	k: 212	n:3000000
KS ci ratio: 1.151535e-03	ci left: 7.938972e-01	ci right 7.948122e-01	k: 2383065	n:3000000
UXS1   3000000 perm   4111 sec   (730 perm/sec)   p_kst 7.943550e-01   p_cons 7.066667e-05   p_joint 1.236667e-04

Joint ci ratio: 2.032299e-01	ci left: 1.110320e-04	ci right 1.364577e-04	k: 371	n:3010000
Cons ci ratio: 2.685844e-01	ci left: 6.126975e-05	ci right 8.057760e-05	k: 212	n:3010000
KS ci ratio: 1.149683e-03	ci left: 7.938802e-01	ci right 7.947937e-01	k: 2390955	n:3010000
UXS1   3010000 perm   4135 sec   (728 perm/sec)   p_kst 7.943372e-01   p_cons 7.043189e-05   p_joint 1.232558e-04

Joint ci ratio: 2.026858e-01	ci left: 1.112929e-04	ci right 1.367017e-04	k: 373	n:3020000
Cons ci ratio: 2.673322e-01	ci left: 6.168464e-05	ci right 8.101741e-05	k: 214	n:3020000
KS ci ratio: 1.147760e-03	ci left: 7.938861e-01	ci right 7.947981e-01	k: 2398914	n:3020000
UXS1   3020000 perm   4162 sec   (726 perm/sec)   p_kst 7.943424e-01   p_cons 7.086093e-05   p_joint 1.235099e-04

Joint ci ratio: 2.024154e-01	ci left: 1.112389e-04	ci right 1.365973e-04	k: 374	n:3030000
Cons ci ratio: 2.673323e-01	ci left: 6.148106e-05	ci right 8.075003e-05	k: 214	n:3030000
KS ci ratio: 1.145852e-03	ci left: 7.938903e-01	ci right 7.948009e-01	k: 2406868	n:3030000
UXS1   3030000 perm   4188 sec   (723 perm/sec)   p_kst 7.943459e-01   p_cons 7.062706e-05   p_joint 1.234323e-04

Joint ci ratio: 2.016105e-01	ci left: 1.118099e-04	ci right 1.371847e-04	k: 377	n:3040000
Cons ci ratio: 2.654863e-01	ci left: 6.219976e-05	ci right 8.153700e-05	k: 217	n:3040000
KS ci ratio: 1.144017e-03	ci left: 7.938764e-01	ci right 7.947855e-01	k: 2414767	n:3040000
UXS1   3040000 perm   4214 sec   (721 perm/sec)   p_kst 7.943313e-01   p_cons 7.138158e-05   p_joint 1.240132e-04

Joint ci ratio: 2.008151e-01	ci left: 1.123774e-04	ci right 1.377680e-04	k: 380	n:3050000
Cons ci ratio: 2.636781e-01	ci left: 6.291420e-05	ci right 8.231835e-05	k: 220	n:3050000
KS ci ratio: 1.142200e-03	ci left: 7.938600e-01	ci right 7.947676e-01	k: 2422658	n:3050000
UXS1   3050000 perm   4241 sec   (719 perm/sec)   p_kst 7.943141e-01   p_cons 7.213115e-05   p_joint 1.245902e-04

Joint ci ratio: 2.008151e-01	ci left: 1.120102e-04	ci right 1.373178e-04	k: 380	n:3060000
Cons ci ratio: 2.636782e-01	ci left: 6.270860e-05	ci right 8.204934e-05	k: 220	n:3060000
KS ci ratio: 1.140278e-03	ci left: 7.938764e-01	ci right 7.947825e-01	k: 2430649	n:3060000
UXS1   3060000 perm   4267 sec   (717 perm/sec)   p_kst 7.943297e-01   p_cons 7.189542e-05   p_joint 1.241830e-04

Joint ci ratio: 2.008152e-01	ci left: 1.116453e-04	ci right 1.368705e-04	k: 380	n:3070000
Cons ci ratio: 2.636782e-01	ci left: 6.250434e-05	ci right 8.178208e-05	k: 220	n:3070000
KS ci ratio: 1.138382e-03	ci left: 7.938878e-01	ci right 7.947924e-01	k: 2438625	n:3070000
UXS1   3070000 perm   4292 sec   (715 perm/sec)   p_kst 7.943404e-01   p_cons 7.166124e-05   p_joint 1.237785e-04

Joint ci ratio: 2.008152e-01	ci left: 1.112828e-04	ci right 1.364261e-04	k: 380	n:3080000
Cons ci ratio: 2.636782e-01	ci left: 6.230140e-05	ci right 8.151655e-05	k: 220	n:3080000
KS ci ratio: 1.136439e-03	ci left: 7.939154e-01	ci right 7.948185e-01	k: 2446651	n:3080000
UXS1   3080000 perm   4317 sec   (713 perm/sec)   p_kst 7.943672e-01   p_cons 7.142857e-05   p_joint 1.233766e-04

Joint ci ratio: 2.008153e-01	ci left: 1.109227e-04	ci right 1.359846e-04	k: 380	n:3090000
Cons ci ratio: 2.636783e-01	ci left: 6.209977e-05	ci right 8.125275e-05	k: 220	n:3090000
KS ci ratio: 1.134578e-03	ci left: 7.939221e-01	ci right 7.948237e-01	k: 2454613	n:3090000
UXS1   3090000 perm   4344 sec   (711 perm/sec)   p_kst 7.943731e-01   p_cons 7.119741e-05   p_joint 1.229773e-04

Joint ci ratio: 2.008153e-01	ci left: 1.105649e-04	ci right 1.355459e-04	k: 380	n:3100000
Cons ci ratio: 2.636783e-01	ci left: 6.189945e-05	ci right 8.099064e-05	k: 220	n:3100000
KS ci ratio: 1.132781e-03	ci left: 7.939129e-01	ci right 7.948130e-01	k: 2462526	n:3100000
UXS1   3100000 perm   4369 sec   (709 perm/sec)   p_kst 7.943632e-01   p_cons 7.096774e-05   p_joint 1.225806e-04

Joint ci ratio: 2.005523e-01	ci left: 1.105147e-04	ci right 1.354478e-04	k: 381	n:3110000
Cons ci ratio: 2.636783e-01	ci left: 6.170042e-05	ci right 8.073022e-05	k: 220	n:3110000
KS ci ratio: 1.130925e-03	ci left: 7.939234e-01	ci right 7.948221e-01	k: 2470500	n:3110000
UXS1   3110000 perm   4395 sec   (708 perm/sec)   p_kst 7.943730e-01   p_cons 7.073955e-05   p_joint 1.225080e-04

Joint ci ratio: 2.000293e-01	ci left: 1.107694e-04	ci right 1.356868e-04	k: 383	n:3120000
Cons ci ratio: 2.630838e-01	ci left: 6.180201e-05	ci right 8.081310e-05	k: 221	n:3120000
KS ci ratio: 1.129089e-03	ci left: 7.939306e-01	ci right 7.948278e-01	k: 2478464	n:3120000
UXS1   3120000 perm   4420 sec   (706 perm/sec)   p_kst 7.943795e-01   p_cons 7.083333e-05   p_joint 1.227564e-04

Joint ci ratio: 1.997694e-01	ci left: 1.107190e-04	ci right 1.355887e-04	k: 384	n:3130000
Cons ci ratio: 2.630838e-01	ci left: 6.160456e-05	ci right 8.055491e-05	k: 221	n:3130000
KS ci ratio: 1.127291e-03	ci left: 7.939291e-01	ci right 7.948249e-01	k: 2486401	n:3130000
UXS1   3130000 perm   4446 sec   (704 perm/sec)   p_kst 7.943773e-01   p_cons 7.060703e-05   p_joint 1.226837e-04

Joint ci ratio: 1.992525e-01	ci left: 1.109715e-04	ci right 1.358256e-04	k: 386	n:3140000
Cons ci ratio: 2.630838e-01	ci left: 6.140837e-05	ci right 8.029837e-05	k: 221	n:3140000
KS ci ratio: 1.125509e-03	ci left: 7.939258e-01	ci right 7.948202e-01	k: 2494332	n:3140000
UXS1   3140000 perm   4473 sec   (702 perm/sec)   p_kst 7.943732e-01   p_cons 7.038217e-05   p_joint 1.229299e-04

Joint ci ratio: 1.992525e-01	ci left: 1.106192e-04	ci right 1.353945e-04	k: 386	n:3150000
Cons ci ratio: 2.630839e-01	ci left: 6.121342e-05	ci right 8.004345e-05	k: 221	n:3150000
KS ci ratio: 1.123767e-03	ci left: 7.939129e-01	ci right 7.948059e-01	k: 2502233	n:3150000
UXS1   3150000 perm   4499 sec   (700 perm/sec)   p_kst 7.943597e-01   p_cons 7.015873e-05   p_joint 1.225397e-04

Joint ci ratio: 1.987396e-01	ci left: 1.108705e-04	ci right 1.356304e-04	k: 388	n:3160000
Cons ci ratio: 2.624933e-01	ci left: 6.131532e-05	ci right 8.012740e-05	k: 222	n:3160000
KS ci ratio: 1.121945e-03	ci left: 7.939261e-01	ci right 7.948177e-01	k: 2510216	n:3160000
UXS1   3160000 perm   4526 sec   (698 perm/sec)   p_kst 7.943722e-01   p_cons 7.025316e-05   p_joint 1.227848e-04

Joint ci ratio: 1.982307e-01	ci left: 1.111204e-04	ci right 1.358648e-04	k: 390	n:3170000
Cons ci ratio: 2.619067e-01	ci left: 6.141662e-05	ci right 8.021078e-05	k: 223	n:3170000
KS ci ratio: 1.120135e-03	ci left: 7.939383e-01	ci right 7.948284e-01	k: 2518196	n:3170000
UXS1   3170000 perm   4553 sec   (696 perm/sec)   p_kst 7.943836e-01   p_cons 7.034700e-05   p_joint 1.230284e-04

Joint ci ratio: 1.977256e-01	ci left: 1.113687e-04	ci right 1.360976e-04	k: 392	n:3180000
Cons ci ratio: 2.607452e-01	ci left: 6.181122e-05	ci right 8.062858e-05	k: 225	n:3180000
KS ci ratio: 1.118401e-03	ci left: 7.939305e-01	ci right 7.948193e-01	k: 2526113	n:3180000
UXS1   3180000 perm   4579 sec   (694 perm/sec)   p_kst 7.943752e-01   p_cons 7.075472e-05   p_joint 1.232704e-04

Joint ci ratio: 1.977256e-01	ci left: 1.110196e-04	ci right 1.356709e-04	k: 392	n:3190000
Cons ci ratio: 2.607452e-01	ci left: 6.161746e-05	ci right 8.037582e-05	k: 225	n:3190000
KS ci ratio: 1.116663e-03	ci left: 7.939263e-01	ci right 7.948136e-01	k: 2534041	n:3190000
UXS1   3190000 perm   4605 sec   (693 perm/sec)   p_kst 7.943702e-01   p_cons 7.053292e-05   p_joint 1.228840e-04

Joint ci ratio: 1.972244e-01	ci left: 1.112667e-04	ci right 1.359028e-04	k: 394	n:3200000
Cons ci ratio: 2.601703e-01	ci left: 6.171700e-05	ci right 8.045751e-05	k: 226	n:3200000
KS ci ratio: 1.114962e-03	ci left: 7.939139e-01	ci right 7.947999e-01	k: 2541943	n:3200000
UXS1   3200000 perm   4631 sec   (691 perm/sec)   p_kst 7.943572e-01   p_cons 7.062500e-05   p_joint 1.231250e-04

Joint ci ratio: 1.969752e-01	ci left: 1.112163e-04	ci right 1.358063e-04	k: 395	n:3210000
Cons ci ratio: 2.601703e-01	ci left: 6.152474e-05	ci right 8.020686e-05	k: 226	n:3210000
KS ci ratio: 1.113206e-03	ci left: 7.939197e-01	ci right 7.948043e-01	k: 2549903	n:3210000
UXS1   3210000 perm   4658 sec   (689 perm/sec)   p_kst 7.943623e-01   p_cons 7.040498e-05   p_joint 1.230530e-04

Joint ci ratio: 1.964797e-01	ci left: 1.114614e-04	ci right 1.360363e-04	k: 397	n:3220000
Cons ci ratio: 2.601703e-01	ci left: 6.133367e-05	ci right 7.995777e-05	k: 226	n:3220000
KS ci ratio: 1.111458e-03	ci left: 7.939258e-01	ci right 7.948090e-01	k: 2557864	n:3220000
UXS1   3220000 perm   4685 sec   (687 perm/sec)   p_kst 7.943677e-01   p_cons 7.018634e-05   p_joint 1.232919e-04

Joint ci ratio: 1.962333e-01	ci left: 1.114107e-04	ci right 1.359399e-04	k: 398	n:3230000
Cons ci ratio: 2.601704e-01	ci left: 6.114378e-05	ci right 7.971023e-05	k: 226	n:3230000
KS ci ratio: 1.109711e-03	ci left: 7.939341e-01	ci right 7.948159e-01	k: 2565832	n:3230000
UXS1   3230000 perm   4711 sec   (686 perm/sec)   p_kst 7.943752e-01   p_cons 6.996904e-05   p_joint 1.232198e-04

Joint ci ratio: 1.962333e-01	ci left: 1.110668e-04	ci right 1.355203e-04	k: 398	n:3240000
Cons ci ratio: 2.601704e-01	ci left: 6.095506e-05	ci right 7.946421e-05	k: 226	n:3240000
KS ci ratio: 1.108064e-03	ci left: 7.939147e-01	ci right 7.947952e-01	k: 2573711	n:3240000
UXS1   3240000 perm   4738 sec   (684 perm/sec)   p_kst 7.943552e-01   p_cons 6.975309e-05   p_joint 1.228395e-04

Joint ci ratio: 1.959879e-01	ci left: 1.110177e-04	ci right 1.354261e-04	k: 399	n:3250000
Cons ci ratio: 2.595992e-01	ci left: 6.105516e-05	ci right 7.954739e-05	k: 227	n:3250000
KS ci ratio: 1.106369e-03	ci left: 7.939122e-01	ci right 7.947913e-01	k: 2581644	n:3250000
UXS1   3250000 perm   4765 sec   (682 perm/sec)   p_kst 7.943520e-01   p_cons 6.984615e-05   p_joint 1.227692e-04

Joint ci ratio: 1.957434e-01	ci left: 1.109688e-04	ci right 1.353325e-04	k: 400	n:3260000
Cons ci ratio: 2.595992e-01	ci left: 6.086787e-05	ci right 7.930338e-05	k: 227	n:3260000
KS ci ratio: 1.104746e-03	ci left: 7.938906e-01	ci right 7.947684e-01	k: 2589515	n:3260000
UXS1   3260000 perm   4791 sec   (680 perm/sec)   p_kst 7.943298e-01   p_cons 6.963190e-05   p_joint 1.226994e-04

Joint ci ratio: 1.957434e-01	ci left: 1.106295e-04	ci right 1.349186e-04	k: 400	n:3270000
Cons ci ratio: 2.595993e-01	ci left: 6.068173e-05	ci right 7.906087e-05	k: 227	n:3270000
KS ci ratio: 1.103037e-03	ci left: 7.938970e-01	ci right 7.947734e-01	k: 2597477	n:3270000
UXS1   3270000 perm   4819 sec   (679 perm/sec)   p_kst 7.943355e-01   p_cons 6.941896e-05   p_joint 1.223242e-04

Joint ci ratio: 1.957435e-01	ci left: 1.102922e-04	ci right 1.345073e-04	k: 400	n:3280000
Cons ci ratio: 2.595993e-01	ci left: 6.049672e-05	ci right 7.881983e-05	k: 227	n:3280000
KS ci ratio: 1.101368e-03	ci left: 7.938936e-01	ci right 7.947687e-01	k: 2605407	n:3280000
UXS1   3280000 perm   4845 sec   (677 perm/sec)   p_kst 7.943314e-01   p_cons 6.920732e-05   p_joint 1.219512e-04

Joint ci ratio: 1.954999e-01	ci left: 1.102460e-04	ci right 1.344173e-04	k: 401	n:3290000
Cons ci ratio: 2.595993e-01	ci left: 6.031284e-05	ci right 7.858026e-05	k: 227	n:3290000
KS ci ratio: 1.099710e-03	ci left: 7.938890e-01	ci right 7.947628e-01	k: 2613333	n:3290000
UXS1   3290000 perm   4873 sec   (675 perm/sec)   p_kst 7.943261e-01   p_cons 6.899696e-05   p_joint 1.218845e-04

Joint ci ratio: 1.950153e-01	ci left: 1.104884e-04	ci right 1.346456e-04	k: 403	n:3300000
Cons ci ratio: 2.590319e-01	ci left: 6.041341e-05	ci right 7.866482e-05	k: 228	n:3300000
KS ci ratio: 1.098032e-03	ci left: 7.938929e-01	ci right 7.947654e-01	k: 2621287	n:3300000
UXS1   3300000 perm   4900 sec   (673 perm/sec)   p_kst 7.943294e-01   p_cons 6.909091e-05   p_joint 1.221212e-04

Joint ci ratio: 1.938195e-01	ci left: 1.115916e-04	ci right 1.358228e-04	k: 408	n:3310000
Cons ci ratio: 2.567987e-01	ci left: 6.136124e-05	ci right 7.971356e-05	k: 232	n:3310000
KS ci ratio: 1.096292e-03	ci left: 7.939174e-01	ci right 7.947885e-01	k: 2629309	n:3310000
UXS1   3310000 perm   4928 sec   (672 perm/sec)   p_kst 7.943532e-01   p_cons 7.009063e-05   p_joint 1.232628e-04

Joint ci ratio: 1.938196e-01	ci left: 1.112555e-04	ci right 1.354137e-04	k: 408	n:3320000
Cons ci ratio: 2.567987e-01	ci left: 6.117642e-05	ci right 7.947346e-05	k: 232	n:3320000
KS ci ratio: 1.094602e-03	ci left: 7.939293e-01	ci right 7.947991e-01	k: 2637290	n:3320000
UXS1   3320000 perm   4956 sec   (670 perm/sec)   p_kst 7.943645e-01   p_cons 6.987952e-05   p_joint 1.228916e-04

Joint ci ratio: 1.933474e-01	ci left: 1.114929e-04	ci right 1.356367e-04	k: 410	n:3330000
Cons ci ratio: 2.562494e-01	ci left: 6.127370e-05	ci right 7.955437e-05	k: 233	n:3330000
KS ci ratio: 1.092945e-03	ci left: 7.939337e-01	ci right 7.948022e-01	k: 2645246	n:3330000
UXS1   3330000 perm   4983 sec   (668 perm/sec)   p_kst 7.943682e-01   p_cons 6.996997e-05   p_joint 1.231231e-04

Joint ci ratio: 1.928786e-01	ci left: 1.117289e-04	ci right 1.358583e-04	k: 412	n:3340000
Cons ci ratio: 2.557036e-01	ci left: 6.137044e-05	ci right 7.963475e-05	k: 234	n:3340000
KS ci ratio: 1.091227e-03	ci left: 7.939584e-01	ci right 7.948255e-01	k: 2653270	n:3340000
UXS1   3340000 perm   5011 sec   (666 perm/sec)   p_kst 7.943922e-01   p_cons 7.005988e-05   p_joint 1.233533e-04

Joint ci ratio: 1.926456e-01	ci left: 1.116795e-04	ci right 1.357657e-04	k: 413	n:3350000
Cons ci ratio: 2.557036e-01	ci left: 6.118724e-05	ci right 7.939703e-05	k: 234	n:3350000
KS ci ratio: 1.089520e-03	ci left: 7.939821e-01	ci right 7.948479e-01	k: 2661291	n:3350000
UXS1   3350000 perm   5040 sec   (665 perm/sec)   p_kst 7.944152e-01   p_cons 6.985075e-05   p_joint 1.232836e-04

Joint ci ratio: 1.921819e-01	ci left: 1.119137e-04	ci right 1.359855e-04	k: 415	n:3360000
Cons ci ratio: 2.551613e-01	ci left: 6.128371e-05	ci right 7.947736e-05	k: 235	n:3360000
KS ci ratio: 1.087843e-03	ci left: 7.939993e-01	ci right 7.948638e-01	k: 2669291	n:3360000
UXS1   3360000 perm   5068 sec   (663 perm/sec)   p_kst 7.944318e-01   p_cons 6.994048e-05   p_joint 1.235119e-04

Joint ci ratio: 1.921819e-01	ci left: 1.115816e-04	ci right 1.355820e-04	k: 415	n:3370000
Cons ci ratio: 2.551613e-01	ci left: 6.110185e-05	ci right 7.924153e-05	k: 235	n:3370000
KS ci ratio: 1.086232e-03	ci left: 7.939987e-01	ci right 7.948619e-01	k: 2677231	n:3370000
UXS1   3370000 perm   5096 sec   (661 perm/sec)   p_kst 7.944306e-01   p_cons 6.973294e-05   p_joint 1.231454e-04

Joint ci ratio: 1.919514e-01	ci left: 1.115331e-04	ci right 1.354909e-04	k: 416	n:3380000
Cons ci ratio: 2.546224e-01	ci left: 6.119804e-05	ci right 7.932180e-05	k: 236	n:3380000
KS ci ratio: 1.084646e-03	ci left: 7.939927e-01	ci right 7.948547e-01	k: 2685153	n:3380000
UXS1   3380000 perm   5124 sec   (660 perm/sec)   p_kst 7.944240e-01   p_cons 6.982249e-05   p_joint 1.230769e-04

Joint ci ratio: 1.919514e-01	ci left: 1.112041e-04	ci right 1.350912e-04	k: 416	n:3390000
Cons ci ratio: 2.546224e-01	ci left: 6.101751e-05	ci right 7.908782e-05	k: 236	n:3390000
KS ci ratio: 1.083035e-03	ci left: 7.939963e-01	ci right 7.948569e-01	k: 2693107	n:3390000
UXS1   3390000 perm   5150 sec   (658 perm/sec)   p_kst 7.944268e-01   p_cons 6.961652e-05   p_joint 1.227139e-04

Joint ci ratio: 1.914927e-01	ci left: 1.114370e-04	ci right 1.353104e-04	k: 418	n:3400000
Cons ci ratio: 2.546225e-01	ci left: 6.083805e-05	ci right 7.885521e-05	k: 236	n:3400000
KS ci ratio: 1.081405e-03	ci left: 7.940077e-01	ci right 7.948671e-01	k: 2701088	n:3400000
UXS1   3400000 perm   5178 sec   (657 perm/sec)   p_kst 7.944376e-01   p_cons 6.941176e-05   p_joint 1.229412e-04

Joint ci ratio: 1.914927e-01	ci left: 1.111103e-04	ci right 1.349136e-04	k: 418	n:3410000
Cons ci ratio: 2.546225e-01	ci left: 6.065964e-05	ci right 7.862396e-05	k: 236	n:3410000
KS ci ratio: 1.079838e-03	ci left: 7.940024e-01	ci right 7.948605e-01	k: 2709012	n:3410000
UXS1   3410000 perm   5207 sec   (655 perm/sec)   p_kst 7.944317e-01   p_cons 6.920821e-05   p_joint 1.225806e-04

Joint ci ratio: 1.914928e-01	ci left: 1.107854e-04	ci right 1.345191e-04	k: 418	n:3420000
Cons ci ratio: 2.546225e-01	ci left: 6.048227e-05	ci right 7.839407e-05	k: 236	n:3420000
KS ci ratio: 1.078265e-03	ci left: 7.940011e-01	ci right 7.948580e-01	k: 2716950	n:3420000
UXS1   3420000 perm   5235 sec   (653 perm/sec)   p_kst 7.944298e-01   p_cons 6.900585e-05   p_joint 1.222222e-04

Joint ci ratio: 1.914928e-01	ci left: 1.104624e-04	ci right 1.341269e-04	k: 418	n:3430000
Cons ci ratio: 2.546225e-01	ci left: 6.030594e-05	ci right 7.816551e-05	k: 236	n:3430000
KS ci ratio: 1.076614e-03	ci left: 7.940253e-01	ci right 7.948809e-01	k: 2724975	n:3430000
UXS1   3430000 perm   5263 sec   (652 perm/sec)   p_kst 7.944534e-01   p_cons 6.880466e-05   p_joint 1.218659e-04

Joint ci ratio: 1.912647e-01	ci left: 1.104180e-04	ci right 1.340416e-04	k: 419	n:3440000
Cons ci ratio: 2.546226e-01	ci left: 6.013063e-05	ci right 7.793829e-05	k: 236	n:3440000
KS ci ratio: 1.075031e-03	ci left: 7.940310e-01	ci right 7.948854e-01	k: 2732937	n:3440000
UXS1   3440000 perm   5291 sec   (650 perm/sec)   p_kst 7.944584e-01   p_cons 6.860465e-05   p_joint 1.218023e-04

Joint ci ratio: 1.905852e-01	ci left: 1.109260e-04	ci right 1.345641e-04	k: 422	n:3450000
Cons ci ratio: 2.535549e-01	ci left: 6.049913e-05	ci right 7.832893e-05	k: 238	n:3450000
KS ci ratio: 1.073480e-03	ci left: 7.940291e-01	ci right 7.948822e-01	k: 2740873	n:3450000
UXS1   3450000 perm   5319 sec   (649 perm/sec)   p_kst 7.944559e-01   p_cons 6.898551e-05   p_joint 1.223188e-04

Joint ci ratio: 1.903603e-01	ci left: 1.108806e-04	ci right 1.344780e-04	k: 423	n:3460000
Cons ci ratio: 2.530261e-01	ci left: 6.059495e-05	ci right 7.840987e-05	k: 239	n:3460000
KS ci ratio: 1.071941e-03	ci left: 7.940258e-01	ci right 7.948777e-01	k: 2748804	n:3460000
UXS1   3460000 perm   5348 sec   (647 perm/sec)   p_kst 7.944520e-01   p_cons 6.907514e-05   p_joint 1.222543e-04

Joint ci ratio: 1.896904e-01	ci left: 1.113845e-04	ci right 1.349961e-04	k: 426	n:3470000
Cons ci ratio: 2.525006e-01	ci left: 6.069026e-05	ci right 7.849030e-05	k: 240	n:3470000
KS ci ratio: 1.070420e-03	ci left: 7.940188e-01	ci right 7.948695e-01	k: 2756722	n:3470000
UXS1   3470000 perm   5377 sec   (645 perm/sec)   p_kst 7.944444e-01   p_cons 6.916427e-05   p_joint 1.227666e-04

Joint ci ratio: 1.896904e-01	ci left: 1.110644e-04	ci right 1.346082e-04	k: 426	n:3480000
Cons ci ratio: 2.525006e-01	ci left: 6.051586e-05	ci right 7.826476e-05	k: 240	n:3480000
KS ci ratio: 1.068815e-03	ci left: 7.940397e-01	ci right 7.948891e-01	k: 2764737	n:3480000
UXS1   3480000 perm   5405 sec   (644 perm/sec)   p_kst 7.944647e-01   p_cons 6.896552e-05   p_joint 1.224138e-04

Joint ci ratio: 1.892477e-01	ci left: 1.112921e-04	ci right 1.348227e-04	k: 428	n:3490000
Cons ci ratio: 2.519784e-01	ci left: 6.061088e-05	ci right 7.834511e-05	k: 241	n:3490000
KS ci ratio: 1.067312e-03	ci left: 7.940312e-01	ci right 7.948794e-01	k: 2772650	n:3490000
UXS1   3490000 perm   5434 sec   (642 perm/sec)   p_kst 7.944556e-01   p_cons 6.905444e-05   p_joint 1.226361e-04

Joint ci ratio: 1.890275e-01	ci left: 1.112463e-04	ci right 1.347367e-04	k: 429	n:3500000
Cons ci ratio: 2.519784e-01	ci left: 6.043771e-05	ci right 7.812127e-05	k: 241	n:3500000
KS ci ratio: 1.065790e-03	ci left: 7.940305e-01	ci right 7.948775e-01	k: 2780590	n:3500000
UXS1   3500000 perm   5463 sec   (641 perm/sec)   p_kst 7.944543e-01   p_cons 6.885714e-05   p_joint 1.225714e-04

Joint ci ratio: 1.885895e-01	ci left: 1.114722e-04	ci right 1.349496e-04	k: 431	n:3510000
Cons ci ratio: 2.509435e-01	ci left: 6.079942e-05	ci right 7.850433e-05	k: 243	n:3510000
KS ci ratio: 1.064259e-03	ci left: 7.940350e-01	ci right 7.948808e-01	k: 2788548	n:3510000
UXS1   3510000 perm   5493 sec   (639 perm/sec)   p_kst 7.944581e-01   p_cons 6.923077e-05   p_joint 1.227920e-04

Joint ci ratio: 1.885895e-01	ci left: 1.111555e-04	ci right 1.345662e-04	k: 431	n:3520000
Cons ci ratio: 2.509436e-01	ci left: 6.062669e-05	ci right 7.828131e-05	k: 243	n:3520000
KS ci ratio: 1.062782e-03	ci left: 7.940246e-01	ci right 7.948692e-01	k: 2796454	n:3520000
UXS1   3520000 perm   5523 sec   (637 perm/sec)   p_kst 7.944472e-01   p_cons 6.903409e-05   p_joint 1.224432e-04

Joint ci ratio: 1.881544e-01	ci left: 1.113805e-04	ci right 1.347782e-04	k: 433	n:3530000
Cons ci ratio: 2.504309e-01	ci left: 6.072043e-05	ci right 7.836060e-05	k: 244	n:3530000
KS ci ratio: 1.061334e-03	ci left: 7.940072e-01	ci right 7.948506e-01	k: 2804335	n:3530000
UXS1   3530000 perm   5552 sec   (636 perm/sec)   p_kst 7.944292e-01   p_cons 6.912181e-05   p_joint 1.226629e-04

Joint ci ratio: 1.881545e-01	ci left: 1.110659e-04	ci right 1.343975e-04	k: 433	n:3540000
Cons ci ratio: 2.504309e-01	ci left: 6.054891e-05	ci right 7.813924e-05	k: 244	n:3540000
KS ci ratio: 1.059836e-03	ci left: 7.940072e-01	ci right 7.948494e-01	k: 2812277	n:3540000
UXS1   3540000 perm   5582 sec   (634 perm/sec)   p_kst 7.944285e-01   p_cons 6.892655e-05   p_joint 1.223164e-04

Joint ci ratio: 1.881545e-01	ci left: 1.107530e-04	ci right 1.340189e-04	k: 433	n:3550000
Cons ci ratio: 2.504309e-01	ci left: 6.037834e-05	ci right 7.791913e-05	k: 244	n:3550000
KS ci ratio: 1.058366e-03	ci left: 7.940004e-01	ci right 7.948414e-01	k: 2820195	n:3550000
UXS1   3550000 perm   5612 sec   (633 perm/sec)   p_kst 7.944211e-01   p_cons 6.873239e-05   p_joint 1.219718e-04

Joint ci ratio: 1.879381e-01	ci left: 1.107096e-04	ci right 1.339366e-04	k: 434	n:3560000
Cons ci ratio: 2.499214e-01	ci left: 6.047203e-05	ci right 7.799873e-05	k: 245	n:3560000
KS ci ratio: 1.056908e-03	ci left: 7.939919e-01	ci right 7.948318e-01	k: 2828107	n:3560000
UXS1   3560000 perm   5642 sec   (631 perm/sec)   p_kst 7.944121e-01   p_cons 6.882022e-05   p_joint 1.219101e-04

Joint ci ratio: 1.879381e-01	ci left: 1.103995e-04	ci right 1.335614e-04	k: 434	n:3570000
Cons ci ratio: 2.499214e-01	ci left: 6.030264e-05	ci right 7.778025e-05	k: 245	n:3570000
KS ci ratio: 1.055420e-03	ci left: 7.939944e-01	ci right 7.948331e-01	k: 2836058	n:3570000
UXS1   3570000 perm   5672 sec   (629 perm/sec)   p_kst 7.944140e-01   p_cons 6.862745e-05   p_joint 1.215686e-04

Joint ci ratio: 1.877225e-01	ci left: 1.103573e-04	ci right 1.334808e-04	k: 435	n:3580000
Cons ci ratio: 2.499214e-01	ci left: 6.013420e-05	ci right 7.756299e-05	k: 245	n:3580000
KS ci ratio: 1.054024e-03	ci left: 7.939704e-01	ci right 7.948079e-01	k: 2843914	n:3580000
UXS1   3580000 perm   5701 sec   (628 perm/sec)   p_kst 7.943894e-01   p_cons 6.843575e-05   p_joint 1.215084e-04

Joint ci ratio: 1.875076e-01	ci left: 1.103154e-04	ci right 1.334006e-04	k: 436	n:3590000
Cons ci ratio: 2.499215e-01	ci left: 5.996669e-05	ci right 7.734693e-05	k: 245	n:3590000
KS ci ratio: 1.052564e-03	ci left: 7.939682e-01	ci right 7.948046e-01	k: 2851848	n:3590000
UXS1   3590000 perm   5731 sec   (626 perm/sec)   p_kst 7.943866e-01   p_cons 6.824513e-05   p_joint 1.214485e-04

Joint ci ratio: 1.868672e-01	ci left: 1.108032e-04	ci right 1.339024e-04	k: 439	n:3600000
Cons ci ratio: 2.489116e-01	ci left: 6.032095e-05	ci right 7.772229e-05	k: 247	n:3600000
KS ci ratio: 1.051046e-03	ci left: 7.939860e-01	ci right 7.948213e-01	k: 2859854	n:3600000
UXS1   3600000 perm   5762 sec   (625 perm/sec)   p_kst 7.944039e-01   p_cons 6.861111e-05   p_joint 1.219444e-04

Joint ci ratio: 1.868673e-01	ci left: 1.104963e-04	ci right 1.335314e-04	k: 439	n:3610000
Cons ci ratio: 2.489117e-01	ci left: 6.015386e-05	ci right 7.750699e-05	k: 247	n:3610000
KS ci ratio: 1.049631e-03	ci left: 7.939736e-01	ci right 7.948077e-01	k: 2867751	n:3610000
UXS1   3610000 perm   5792 sec   (623 perm/sec)   p_kst 7.943909e-01   p_cons 6.842105e-05   p_joint 1.216066e-04

Joint ci ratio: 1.864440e-01	ci left: 1.107177e-04	ci right 1.337408e-04	k: 441	n:3620000
Cons ci ratio: 2.484113e-01	ci left: 6.024672e-05	ci right 7.758631e-05	k: 248	n:3620000
KS ci ratio: 1.048232e-03	ci left: 7.939579e-01	ci right 7.947908e-01	k: 2875636	n:3620000
UXS1   3620000 perm   5823 sec   (622 perm/sec)   p_kst 7.943746e-01   p_cons 6.850829e-05   p_joint 1.218232e-04

Joint ci ratio: 1.858144e-01	ci left: 1.112006e-04	ci right 1.342373e-04	k: 444	n:3630000
Cons ci ratio: 2.474196e-01	ci left: 6.059749e-05	ci right 7.795769e-05	k: 250	n:3630000
KS ci ratio: 1.046809e-03	ci left: 7.939516e-01	ci right 7.947834e-01	k: 2883555	n:3630000
UXS1   3630000 perm   5852 sec   (620 perm/sec)   p_kst 7.943678e-01   p_cons 6.887052e-05   p_joint 1.223140e-04

Joint ci ratio: 1.856060e-01	ci left: 1.111571e-04	ci right 1.341560e-04	k: 445	n:3640000
Cons ci ratio: 2.469282e-01	ci left: 6.068872e-05	ci right 7.803523e-05	k: 251	n:3640000
KS ci ratio: 1.045371e-03	ci left: 7.939520e-01	ci right 7.947827e-01	k: 2891498	n:3640000
UXS1   3640000 perm   5882 sec   (619 perm/sec)   p_kst 7.943676e-01   p_cons 6.895604e-05   p_joint 1.222527e-04

Joint ci ratio: 1.851912e-01	ci left: 1.113751e-04	ci right 1.343618e-04	k: 447	n:3650000
Cons ci ratio: 2.464397e-01	ci left: 6.077949e-05	ci right 7.811231e-05	k: 252	n:3650000
KS ci ratio: 1.043907e-03	ci left: 7.939623e-01	ci right 7.947918e-01	k: 2899477	n:3650000
UXS1   3650000 perm   5912 sec   (617 perm/sec)   p_kst 7.943773e-01   p_cons 6.904110e-05   p_joint 1.224658e-04

Joint ci ratio: 1.849849e-01	ci left: 1.113313e-04	ci right 1.342806e-04	k: 448	n:3660000
Cons ci ratio: 2.459541e-01	ci left: 6.086979e-05	ci right 7.818893e-05	k: 253	n:3660000
KS ci ratio: 1.042473e-03	ci left: 7.939651e-01	ci right 7.947935e-01	k: 2907429	n:3660000
UXS1   3660000 perm   5942 sec   (616 perm/sec)   p_kst 7.943795e-01   p_cons 6.912568e-05   p_joint 1.224044e-04

Joint ci ratio: 1.847792e-01	ci left: 1.112879e-04	ci right 1.341998e-04	k: 449	n:3670000
Cons ci ratio: 2.454714e-01	ci left: 6.095964e-05	ci right 7.826511e-05	k: 254	n:3670000
KS ci ratio: 1.041064e-03	ci left: 7.939619e-01	ci right 7.947891e-01	k: 2915359	n:3670000
UXS1   3670000 perm   5972 sec   (615 perm/sec)   p_kst 7.943757e-01   p_cons 6.920981e-05   p_joint 1.223433e-04

Joint ci ratio: 1.843699e-01	ci left: 1.115038e-04	ci right 1.344036e-04	k: 451	n:3680000
Cons ci ratio: 2.445143e-01	ci left: 6.130410e-05	ci right 7.862920e-05	k: 256	n:3680000
KS ci ratio: 1.039707e-03	ci left: 7.939440e-01	ci right 7.947702e-01	k: 2923235	n:3680000
UXS1   3680000 perm   6002 sec   (613 perm/sec)   p_kst 7.943573e-01   p_cons 6.956522e-05   p_joint 1.225543e-04

Joint ci ratio: 1.841663e-01	ci left: 1.114601e-04	ci right 1.343229e-04	k: 452	n:3690000
Cons ci ratio: 2.445143e-01	ci left: 6.113797e-05	ci right 7.841612e-05	k: 256	n:3690000
KS ci ratio: 1.038310e-03	ci left: 7.939404e-01	ci right 7.947654e-01	k: 2931163	n:3690000
UXS1   3690000 perm   6033 sec   (612 perm/sec)   p_kst 7.943531e-01   p_cons 6.937669e-05   p_joint 1.224932e-04

Joint ci ratio: 1.839634e-01	ci left: 1.114167e-04	ci right 1.342426e-04	k: 453	n:3700000
Cons ci ratio: 2.440400e-01	ci left: 6.122646e-05	ci right 7.849096e-05	k: 257	n:3700000
KS ci ratio: 1.036872e-03	ci left: 7.939519e-01	ci right 7.947758e-01	k: 2939147	n:3700000
UXS1   3700000 perm   6062 sec   (610 perm/sec)   p_kst 7.943641e-01   p_cons 6.945946e-05   p_joint 1.224324e-04

Joint ci ratio: 1.835595e-01	ci left: 1.116307e-04	ci right 1.344446e-04	k: 455	n:3710000
Cons ci ratio: 2.435684e-01	ci left: 6.131450e-05	ci right 7.856537e-05	k: 258	n:3710000
KS ci ratio: 1.035487e-03	ci left: 7.939482e-01	ci right 7.947710e-01	k: 2947075	n:3710000
UXS1   3710000 perm   6092 sec   (609 perm/sec)   p_kst 7.943598e-01   p_cons 6.954178e-05   p_joint 1.226415e-04

Joint ci ratio: 1.833586e-01	ci left: 1.115871e-04	ci right 1.343643e-04	k: 456	n:3720000
Cons ci ratio: 2.430996e-01	ci left: 6.140211e-05	ci right 7.863935e-05	k: 259	n:3720000
KS ci ratio: 1.034087e-03	ci left: 7.939510e-01	ci right 7.947727e-01	k: 2955027	n:3720000
UXS1   3720000 perm   6122 sec   (608 perm/sec)   p_kst 7.943621e-01   p_cons 6.962366e-05   p_joint 1.225806e-04

Joint ci ratio: 1.833586e-01	ci left: 1.112879e-04	ci right 1.340041e-04	k: 456	n:3730000
Cons ci ratio: 2.430996e-01	ci left: 6.123749e-05	ci right 7.842852e-05	k: 259	n:3730000
KS ci ratio: 1.032708e-03	ci left: 7.939490e-01	ci right 7.947696e-01	k: 2962961	n:3730000
UXS1   3730000 perm   6153 sec   (606 perm/sec)   p_kst 7.943595e-01   p_cons 6.943700e-05   p_joint 1.222520e-04

Joint ci ratio: 1.827597e-01	ci left: 1.117557e-04	ci right 1.344846e-04	k: 459	n:3740000
Cons ci ratio: 2.421699e-01	ci left: 6.157600e-05	ci right 7.878603e-05	k: 261	n:3740000
KS ci ratio: 1.031297e-03	ci left: 7.939587e-01	ci right 7.947782e-01	k: 2970939	n:3740000
UXS1   3740000 perm   6184 sec   (605 perm/sec)   p_kst 7.943687e-01   p_cons 6.978610e-05   p_joint 1.227273e-04

Joint ci ratio: 1.823636e-01	ci left: 1.119667e-04	ci right 1.346837e-04	k: 461	n:3750000
Cons ci ratio: 2.417090e-01	ci left: 6.166230e-05	ci right 7.885873e-05	k: 262	n:3750000
KS ci ratio: 1.029922e-03	ci left: 7.939591e-01	ci right 7.947775e-01	k: 2978882	n:3750000
UXS1   3750000 perm   6216 sec   (603 perm/sec)   p_kst 7.943685e-01   p_cons 6.986667e-05   p_joint 1.229333e-04

Joint ci ratio: 1.817744e-01	ci left: 1.124304e-04	ci right 1.351597e-04	k: 464	n:3760000
Cons ci ratio: 2.412508e-01	ci left: 6.174817e-05	ci right 7.893102e-05	k: 263	n:3760000
KS ci ratio: 1.028520e-03	ci left: 7.939696e-01	ci right 7.947869e-01	k: 2986863	n:3760000
UXS1   3760000 perm   6248 sec   (602 perm/sec)   p_kst 7.943785e-01   p_cons 6.994681e-05   p_joint 1.234043e-04

Joint ci ratio: 1.815792e-01	ci left: 1.123854e-04	ci right 1.350785e-04	k: 465	n:3770000
Cons ci ratio: 2.412508e-01	ci left: 6.158439e-05	ci right 7.872165e-05	k: 263	n:3770000
KS ci ratio: 1.027187e-03	ci left: 7.939601e-01	ci right 7.947763e-01	k: 2994769	n:3770000
UXS1   3770000 perm   6279 sec   (600 perm/sec)   p_kst 7.943684e-01   p_cons 6.976127e-05   p_joint 1.233422e-04

Joint ci ratio: 1.813847e-01	ci left: 1.123406e-04	ci right 1.349977e-04	k: 466	n:3780000
Cons ci ratio: 2.407952e-01	ci left: 6.167004e-05	ci right 7.879389e-05	k: 264	n:3780000
KS ci ratio: 1.025861e-03	ci left: 7.939499e-01	ci right 7.947650e-01	k: 3002672	n:3780000
UXS1   3780000 perm   6310 sec   (599 perm/sec)   p_kst 7.943577e-01   p_cons 6.984127e-05   p_joint 1.232804e-04

Joint ci ratio: 1.809976e-01	ci left: 1.125479e-04	ci right 1.351931e-04	k: 468	n:3790000
Cons ci ratio: 2.403422e-01	ci left: 6.175527e-05	ci right 7.886572e-05	k: 265	n:3790000
KS ci ratio: 1.024558e-03	ci left: 7.939339e-01	ci right 7.947480e-01	k: 3010553	n:3790000
UXS1   3790000 perm   6340 sec   (598 perm/sec)   p_kst 7.943412e-01   p_cons 6.992084e-05   p_joint 1.234828e-04

Joint ci ratio: 1.809976e-01	ci left: 1.122518e-04	ci right 1.348373e-04	k: 468	n:3800000
Cons ci ratio: 2.403422e-01	ci left: 6.159276e-05	ci right 7.865818e-05	k: 265	n:3800000
KS ci ratio: 1.023220e-03	ci left: 7.939309e-01	ci right 7.947439e-01	k: 3018483	n:3800000
UXS1   3800000 perm   6372 sec   (596 perm/sec)   p_kst 7.943376e-01   p_cons 6.973684e-05   p_joint 1.231579e-04

Joint ci ratio: 1.808049e-01	ci left: 1.122077e-04	ci right 1.347578e-04	k: 469	n:3810000
Cons ci ratio: 2.403422e-01	ci left: 6.143109e-05	ci right 7.845173e-05	k: 265	n:3810000
KS ci ratio: 1.021882e-03	ci left: 7.939298e-01	ci right 7.947417e-01	k: 3026420	n:3810000
UXS1   3810000 perm   6403 sec   (595 perm/sec)   p_kst 7.943360e-01   p_cons 6.955381e-05   p_joint 1.230971e-04

Joint ci ratio: 1.808050e-01	ci left: 1.119140e-04	ci right 1.344050e-04	k: 469	n:3820000
Cons ci ratio: 2.403422e-01	ci left: 6.127028e-05	ci right 7.824636e-05	k: 265	n:3820000
KS ci ratio: 1.020553e-03	ci left: 7.939273e-01	ci right 7.947382e-01	k: 3034352	n:3820000
UXS1   3820000 perm   6435 sec   (594 perm/sec)   p_kst 7.943330e-01   p_cons 6.937173e-05   p_joint 1.227749e-04

Joint ci ratio: 1.804215e-01	ci left: 1.121204e-04	ci right 1.345998e-04	k: 471	n:3830000
Cons ci ratio: 2.398917e-01	ci left: 6.135569e-05	ci right 7.831883e-05	k: 266	n:3830000
KS ci ratio: 1.019177e-03	ci left: 7.939413e-01	ci right 7.947512e-01	k: 3042347	n:3830000
UXS1   3830000 perm   6467 sec   (592 perm/sec)   p_kst 7.943465e-01   p_cons 6.945170e-05   p_joint 1.229765e-04

Joint ci ratio: 1.802307e-01	ci left: 1.120771e-04	ci right 1.345215e-04	k: 472	n:3840000
Cons ci ratio: 2.394437e-01	ci left: 6.144069e-05	ci right 7.839090e-05	k: 267	n:3840000
KS ci ratio: 1.017844e-03	ci left: 7.939436e-01	ci right 7.947523e-01	k: 3050297	n:3840000
UXS1   3840000 perm   6499 sec   (591 perm/sec)   p_kst 7.943482e-01   p_cons 6.953125e-05   p_joint 1.229167e-04

Joint ci ratio: 1.802307e-01	ci left: 1.117859e-04	ci right 1.341721e-04	k: 472	n:3850000
Cons ci ratio: 2.394437e-01	ci left: 6.128111e-05	ci right 7.818729e-05	k: 267	n:3850000
KS ci ratio: 1.016515e-03	ci left: 7.939461e-01	ci right 7.947538e-01	k: 3058248	n:3850000
UXS1   3850000 perm   6531 sec   (590 perm/sec)   p_kst 7.943501e-01   p_cons 6.935065e-05   p_joint 1.225974e-04

Joint ci ratio: 1.802307e-01	ci left: 1.114963e-04	ci right 1.338245e-04	k: 472	n:3860000
Cons ci ratio: 2.394438e-01	ci left: 6.112235e-05	ci right 7.798473e-05	k: 267	n:3860000
KS ci ratio: 1.015168e-03	ci left: 7.939563e-01	ci right 7.947629e-01	k: 3066229	n:3860000
UXS1   3860000 perm   6566 sec   (588 perm/sec)   p_kst 7.943598e-01   p_cons 6.917098e-05   p_joint 1.222798e-04

Joint ci ratio: 1.802308e-01	ci left: 1.112082e-04	ci right 1.334787e-04	k: 472	n:3870000
Cons ci ratio: 2.394438e-01	ci left: 6.096441e-05	ci right 7.778322e-05	k: 267	n:3870000
KS ci ratio: 1.013878e-03	ci left: 7.939494e-01	ci right 7.947550e-01	k: 3074144	n:3870000
UXS1   3870000 perm   6598 sec   (586 perm/sec)   p_kst 7.943525e-01   p_cons 6.899225e-05   p_joint 1.219638e-04

Joint ci ratio: 1.800405e-01	ci left: 1.111677e-04	ci right 1.334040e-04	k: 473	n:3880000
Cons ci ratio: 2.394438e-01	ci left: 6.080728e-05	ci right 7.758275e-05	k: 267	n:3880000
KS ci ratio: 1.012609e-03	ci left: 7.939377e-01	ci right 7.947423e-01	k: 3082040	n:3880000
UXS1   3880000 perm   6631 sec   (585 perm/sec)   p_kst 7.943402e-01   p_cons 6.881443e-05   p_joint 1.219072e-04

Joint ci ratio: 1.796619e-01	ci left: 1.113729e-04	ci right 1.335983e-04	k: 475	n:3890000
Cons ci ratio: 2.394438e-01	ci left: 6.065096e-05	ci right 7.738331e-05	k: 267	n:3890000
KS ci ratio: 1.011303e-03	ci left: 7.939391e-01	ci right 7.947427e-01	k: 3089987	n:3890000
UXS1   3890000 perm   6663 sec   (584 perm/sec)   p_kst 7.943411e-01   p_cons 6.863753e-05   p_joint 1.221080e-04

Joint ci ratio: 1.796619e-01	ci left: 1.110874e-04	ci right 1.332558e-04	k: 475	n:3900000
Cons ci ratio: 2.394439e-01	ci left: 6.049545e-05	ci right 7.718489e-05	k: 267	n:3900000
KS ci ratio: 1.009993e-03	ci left: 7.939439e-01	ci right 7.947464e-01	k: 3097947	n:3900000
UXS1   3900000 perm   6695 sec   (582 perm/sec)   p_kst 7.943454e-01   p_cons 6.846154e-05   p_joint 1.217949e-04

Joint ci ratio: 1.794735e-01	ci left: 1.110475e-04	ci right 1.331822e-04	k: 476	n:3910000
Cons ci ratio: 2.389984e-01	ci left: 6.058115e-05	ci right 7.725854e-05	k: 268	n:3910000
KS ci ratio: 1.008665e-03	ci left: 7.939561e-01	ci right 7.947576e-01	k: 3105936	n:3910000
UXS1   3910000 perm   6727 sec   (581 perm/sec)   p_kst 7.943570e-01   p_cons 6.854220e-05   p_joint 1.217391e-04

Joint ci ratio: 1.794735e-01	ci left: 1.107642e-04	ci right 1.328425e-04	k: 476	n:3920000
Cons ci ratio: 2.389984e-01	ci left: 6.042661e-05	ci right 7.706146e-05	k: 268	n:3920000
KS ci ratio: 1.007393e-03	ci left: 7.939513e-01	ci right 7.947518e-01	k: 3113859	n:3920000
UXS1   3920000 perm   6760 sec   (580 perm/sec)   p_kst 7.943518e-01   p_cons 6.836735e-05   p_joint 1.214286e-04

Joint ci ratio: 1.792857e-01	ci left: 1.107254e-04	ci right 1.327703e-04	k: 477	n:3930000
Cons ci ratio: 2.389984e-01	ci left: 6.027285e-05	ci right 7.686537e-05	k: 268	n:3930000
KS ci ratio: 1.006115e-03	ci left: 7.939504e-01	ci right 7.947499e-01	k: 3121797	n:3930000
UXS1   3930000 perm   6793 sec   (579 perm/sec)   p_kst 7.943504e-01   p_cons 6.819338e-05   p_joint 1.213740e-04

Joint ci ratio: 1.789118e-01	ci left: 1.109292e-04	ci right 1.329637e-04	k: 479	n:3940000
Cons ci ratio: 2.389984e-01	ci left: 6.011987e-05	ci right 7.667028e-05	k: 268	n:3940000
KS ci ratio: 1.004918e-03	ci left: 7.939247e-01	ci right 7.947231e-01	k: 3129637	n:3940000
UXS1   3940000 perm   6825 sec   (577 perm/sec)   p_kst 7.943241e-01   p_cons 6.802030e-05   p_joint 1.215736e-04

Joint ci ratio: 1.785402e-01	ci left: 1.111321e-04	ci right 1.331560e-04	k: 481	n:3950000
Cons ci ratio: 2.381148e-01	ci left: 6.044374e-05	ci right 7.701272e-05	k: 270	n:3950000
KS ci ratio: 1.003664e-03	ci left: 7.939193e-01	ci right 7.947167e-01	k: 3137557	n:3950000
UXS1   3950000 perm   6858 sec   (576 perm/sec)   p_kst 7.943182e-01   p_cons 6.835443e-05   p_joint 1.217722e-04

Joint ci ratio: 1.783553e-01	ci left: 1.110927e-04	ci right 1.330835e-04	k: 482	n:3960000
Cons ci ratio: 2.376767e-01	ci left: 6.052858e-05	ci right 7.708579e-05	k: 271	n:3960000
KS ci ratio: 1.002395e-03	ci left: 7.939200e-01	ci right 7.947164e-01	k: 3145501	n:3960000
UXS1   3960000 perm   6891 sec   (575 perm/sec)   p_kst 7.943184e-01   p_cons 6.843434e-05   p_joint 1.217172e-04

Joint ci ratio: 1.781709e-01	ci left: 1.110535e-04	ci right 1.330114e-04	k: 483	n:3970000
Cons ci ratio: 2.376767e-01	ci left: 6.037611e-05	ci right 7.689162e-05	k: 271	n:3970000
KS ci ratio: 1.001086e-03	ci left: 7.939356e-01	ci right 7.947310e-01	k: 3153504	n:3970000
UXS1   3970000 perm   6923 sec   (573 perm/sec)   p_kst 7.943335e-01   p_cons 6.826196e-05   p_joint 1.216625e-04

Joint ci ratio: 1.781710e-01	ci left: 1.107745e-04	ci right 1.326772e-04	k: 483	n:3980000
Cons ci ratio: 2.376768e-01	ci left: 6.022442e-05	ci right 7.669842e-05	k: 271	n:3980000
KS ci ratio: 9.998297e-04	ci left: 7.939352e-01	ci right 7.947297e-01	k: 3161444	n:3980000
UXS1   3980000 perm   6954 sec   (572 perm/sec)   p_kst 7.943327e-01   p_cons 6.809045e-05   p_joint 1.213568e-04

Joint ci ratio: 1.781710e-01	ci left: 1.104969e-04	ci right 1.323447e-04	k: 483	n:3990000
Cons ci ratio: 2.376768e-01	ci left: 6.007348e-05	ci right 7.650620e-05	k: 271	n:3990000
KS ci ratio: 9.986091e-04	ci left: 7.939249e-01	ci right 7.947183e-01	k: 3169344	n:3990000
UXS1   3990000 perm   6987 sec   (571 perm/sec)   p_kst 7.943218e-01   p_cons 6.791980e-05   p_joint 1.210526e-04

Joint ci ratio: 1.776213e-01	ci left: 1.109372e-04	ci right 1.327972e-04	k: 486	n:4000000
Cons ci ratio: 2.368077e-01	ci left: 6.039358e-05	ci right 7.684459e-05	k: 273	n:4000000
KS ci ratio: 9.973519e-04	ci left: 7.939281e-01	ci right 7.947205e-01	k: 3177298	n:4000000
UXS1   4000000 perm   7021 sec   (570 perm/sec)   p_kst 7.943245e-01   p_cons 6.825000e-05   p_joint 1.215000e-04

Joint ci ratio: 1.774392e-01	ci left: 1.108989e-04	ci right 1.327265e-04	k: 487	n:4010000
Cons ci ratio: 2.368077e-01	ci left: 6.024297e-05	ci right 7.665296e-05	k: 273	n:4010000
KS ci ratio: 9.961009e-04	ci left: 7.939307e-01	ci right 7.947222e-01	k: 3185250	n:4010000
UXS1   4010000 perm   7054 sec   (569 perm/sec)   p_kst 7.943267e-01   p_cons 6.807980e-05   p_joint 1.214464e-04

Joint ci ratio: 1.770767e-01	ci left: 1.110984e-04	ci right 1.329159e-04	k: 489	n:4020000
Cons ci ratio: 2.363768e-01	ci left: 6.032712e-05	ci right 7.672576e-05	k: 274	n:4020000
KS ci ratio: 9.948417e-04	ci left: 7.939376e-01	ci right 7.947281e-01	k: 3193219	n:4020000
UXS1   4020000 perm   7087 sec   (567 perm/sec)   p_kst 7.943331e-01   p_cons 6.815920e-05   p_joint 1.216418e-04

Joint ci ratio: 1.770768e-01	ci left: 1.108228e-04	ci right 1.325861e-04	k: 489	n:4030000
Cons ci ratio: 2.363768e-01	ci left: 6.017743e-05	ci right 7.653537e-05	k: 274	n:4030000
KS ci ratio: 9.935895e-04	ci left: 7.939438e-01	ci right 7.947332e-01	k: 3201185	n:4030000
UXS1   4030000 perm   7120 sec   (566 perm/sec)   p_kst 7.943387e-01   p_cons 6.799007e-05   p_joint 1.213400e-04

Joint ci ratio: 1.770768e-01	ci left: 1.105484e-04	ci right 1.322579e-04	k: 489	n:4040000
Cons ci ratio: 2.363768e-01	ci left: 6.002847e-05	ci right 7.634593e-05	k: 274	n:4040000
KS ci ratio: 9.923939e-04	ci left: 7.939328e-01	ci right 7.947213e-01	k: 3209082	n:4040000
UXS1   4040000 perm   7152 sec   (565 perm/sec)   p_kst 7.943272e-01   p_cons 6.782178e-05   p_joint 1.210396e-04

Joint ci ratio: 1.770768e-01	ci left: 1.102755e-04	ci right 1.319313e-04	k: 489	n:4050000
Cons ci ratio: 2.363768e-01	ci left: 5.988025e-05	ci right 7.615742e-05	k: 274	n:4050000
KS ci ratio: 9.911495e-04	ci left: 7.939394e-01	ci right 7.947269e-01	k: 3217050	n:4050000
UXS1   4050000 perm   7185 sec   (564 perm/sec)   p_kst 7.943333e-01   p_cons 6.765432e-05   p_joint 1.207407e-04

Joint ci ratio: 1.767165e-01	ci left: 1.104747e-04	ci right 1.321208e-04	k: 491	n:4060000
Cons ci ratio: 2.359482e-01	ci left: 5.996450e-05	ci right 7.623069e-05	k: 275	n:4060000
KS ci ratio: 9.899552e-04	ci left: 7.939309e-01	ci right 7.947175e-01	k: 3224957	n:4060000
UXS1   4060000 perm   7217 sec   (563 perm/sec)   p_kst 7.943244e-01   p_cons 6.773399e-05   p_joint 1.209360e-04

Joint ci ratio: 1.765372e-01	ci left: 1.104381e-04	ci right 1.320527e-04	k: 492	n:4070000
Cons ci ratio: 2.355219e-01	ci left: 6.004835e-05	ci right 7.630358e-05	k: 276	n:4070000
KS ci ratio: 9.887080e-04	ci left: 7.939414e-01	ci right 7.947270e-01	k: 3232941	n:4070000
UXS1   4070000 perm   7251 sec   (561 perm/sec)   p_kst 7.943344e-01   p_cons 6.781327e-05   p_joint 1.208845e-04

Joint ci ratio: 1.763584e-01	ci left: 1.104017e-04	ci right 1.319850e-04	k: 493	n:4080000
Cons ci ratio: 2.350979e-01	ci left: 6.013183e-05	ci right 7.637608e-05	k: 277	n:4080000
KS ci ratio: 9.875247e-04	ci left: 7.939322e-01	ci right 7.947169e-01	k: 3240845	n:4080000
UXS1   4080000 perm   7285 sec   (560 perm/sec)   p_kst 7.943248e-01   p_cons 6.789216e-05   p_joint 1.208333e-04

Joint ci ratio: 1.760025e-01	ci left: 1.105992e-04	ci right 1.321728e-04	k: 495	n:4090000
Cons ci ratio: 2.350980e-01	ci left: 5.998480e-05	ci right 7.618934e-05	k: 277	n:4090000
KS ci ratio: 9.863361e-04	ci left: 7.939263e-01	ci right 7.947100e-01	k: 3248762	n:4090000
UXS1   4090000 perm   7319 sec   (559 perm/sec)   p_kst 7.943183e-01   p_cons 6.772616e-05   p_joint 1.210269e-04

Joint ci ratio: 1.758254e-01	ci left: 1.105626e-04	ci right 1.321051e-04	k: 496	n:4100000
Cons ci ratio: 2.346762e-01	ci left: 6.006805e-05	ci right 7.626174e-05	k: 278	n:4100000
KS ci ratio: 9.851628e-04	ci left: 7.939167e-01	ci right 7.946995e-01	k: 3256664	n:4100000
UXS1   4100000 perm   7353 sec   (558 perm/sec)   p_kst 7.943083e-01   p_cons 6.780488e-05   p_joint 1.209756e-04

Joint ci ratio: 1.758254e-01	ci left: 1.102936e-04	ci right 1.317836e-04	k: 496	n:4110000
Cons ci ratio: 2.346763e-01	ci left: 5.992190e-05	ci right 7.607619e-05	k: 278	n:4110000
KS ci ratio: 9.839981e-04	ci left: 7.939057e-01	ci right 7.946875e-01	k: 3264560	n:4110000
UXS1   4110000 perm   7387 sec   (556 perm/sec)   p_kst 7.942968e-01   p_cons 6.763990e-05   p_joint 1.206813e-04

Joint ci ratio: 1.754727e-01	ci left: 1.104900e-04	ci right 1.319705e-04	k: 498	n:4120000
Cons ci ratio: 2.346763e-01	ci left: 5.977646e-05	ci right 7.589154e-05	k: 278	n:4120000
KS ci ratio: 9.828506e-04	ci left: 7.938904e-01	ci right 7.946713e-01	k: 3272438	n:4120000
UXS1   4120000 perm   7422 sec   (555 perm/sec)   p_kst 7.942811e-01   p_cons 6.747573e-05   p_joint 1.208738e-04

Joint ci ratio: 1.754727e-01	ci left: 1.102224e-04	ci right 1.316510e-04	k: 498	n:4130000
Cons ci ratio: 2.346763e-01	ci left: 5.963172e-05	ci right 7.570779e-05	k: 278	n:4130000
KS ci ratio: 9.816701e-04	ci left: 7.938875e-01	ci right 7.946675e-01	k: 3280367	n:4130000
UXS1   4130000 perm   7456 sec   (554 perm/sec)   p_kst 7.942777e-01   p_cons 6.731235e-05   p_joint 1.205811e-04

Joint ci ratio: 1.752971e-01	ci left: 1.101871e-04	ci right 1.315851e-04	k: 499	n:4140000
Cons ci ratio: 2.342569e-01	ci left: 5.971504e-05	ci right 7.578063e-05	k: 279	n:4140000
KS ci ratio: 9.804763e-04	ci left: 7.938905e-01	ci right 7.946695e-01	k: 3288320	n:4140000
UXS1   4140000 perm   7490 sec   (553 perm/sec)   p_kst 7.942802e-01   p_cons 6.739130e-05   p_joint 1.205314e-04

Joint ci ratio: 1.752971e-01	ci left: 1.099216e-04	ci right 1.312681e-04	k: 499	n:4150000
Cons ci ratio: 2.342569e-01	ci left: 5.957115e-05	ci right 7.559802e-05	k: 279	n:4150000
KS ci ratio: 9.792920e-04	ci left: 7.938917e-01	ci right 7.946698e-01	k: 3296266	n:4150000
UXS1   4150000 perm   7524 sec   (552 perm/sec)   p_kst 7.942810e-01   p_cons 6.722892e-05   p_joint 1.202410e-04

Joint ci ratio: 1.751221e-01	ci left: 1.098872e-04	ci right 1.312034e-04	k: 500	n:4160000
Cons ci ratio: 2.338397e-01	ci left: 5.965424e-05	ci right 7.567075e-05	k: 280	n:4160000
KS ci ratio: 9.780969e-04	ci left: 7.938980e-01	ci right 7.946751e-01	k: 3304233	n:4160000
UXS1   4160000 perm   7558 sec   (550 perm/sec)   p_kst 7.942868e-01   p_cons 6.730769e-05   p_joint 1.201923e-04

Joint ci ratio: 1.749476e-01	ci left: 1.098530e-04	ci right 1.311391e-04	k: 501	n:4170000
Cons ci ratio: 2.334247e-01	ci left: 5.973695e-05	ci right 7.574311e-05	k: 281	n:4170000
KS ci ratio: 9.769004e-04	ci left: 7.939062e-01	ci right 7.946824e-01	k: 3312208	n:4170000
UXS1   4170000 perm   7592 sec   (549 perm/sec)   p_kst 7.942945e-01   p_cons 6.738609e-05   p_joint 1.201439e-04

Joint ci ratio: 1.747736e-01	ci left: 1.098190e-04	ci right 1.310751e-04	k: 502	n:4180000
Cons ci ratio: 2.334247e-01	ci left: 5.959404e-05	ci right 7.556190e-05	k: 281	n:4180000
KS ci ratio: 9.757239e-04	ci left: 7.939091e-01	ci right 7.946843e-01	k: 3320161	n:4180000
UXS1   4180000 perm   7626 sec   (548 perm/sec)   p_kst 7.942969e-01   p_cons 6.722488e-05   p_joint 1.200957e-04

Joint ci ratio: 1.746002e-01	ci left: 1.097851e-04	ci right 1.310113e-04	k: 503	n:4190000
Cons ci ratio: 2.330119e-01	ci left: 5.967653e-05	ci right 7.563415e-05	k: 282	n:4190000
KS ci ratio: 9.745866e-04	ci left: 7.939002e-01	ci right 7.946745e-01	k: 3328065	n:4190000
UXS1   4190000 perm   7660 sec   (547 perm/sec)   p_kst 7.942876e-01   p_cons 6.730310e-05   p_joint 1.200477e-04

Joint ci ratio: 1.740828e-01	ci left: 1.102068e-04	ci right 1.314448e-04	k: 506	n:4200000
Cons ci ratio: 2.321929e-01	ci left: 5.998289e-05	ci right 7.595795e-05	k: 284	n:4200000
KS ci ratio: 9.734590e-04	ci left: 7.938895e-01	ci right 7.946629e-01	k: 3335961	n:4200000
UXS1   4200000 perm   7693 sec   (546 perm/sec)   p_kst 7.942764e-01   p_cons 6.761905e-05   p_joint 1.204762e-04

Joint ci ratio: 1.735700e-01	ci left: 1.106266e-04	ci right 1.318761e-04	k: 509	n:4210000
Cons ci ratio: 2.317866e-01	ci left: 6.006414e-05	ci right 7.602884e-05	k: 285	n:4210000
KS ci ratio: 9.722695e-04	ci left: 7.939010e-01	ci right 7.946735e-01	k: 3343950	n:4210000
UXS1   4210000 perm   7728 sec   (545 perm/sec)   p_kst 7.942874e-01   p_cons 6.769596e-05   p_joint 1.209026e-04

Joint ci ratio: 1.735700e-01	ci left: 1.103645e-04	ci right 1.315636e-04	k: 509	n:4220000
Cons ci ratio: 2.317866e-01	ci left: 5.992181e-05	ci right 7.584868e-05	k: 285	n:4220000
KS ci ratio: 9.710843e-04	ci left: 7.939124e-01	ci right 7.946839e-01	k: 3351939	n:4220000
UXS1   4220000 perm   7762 sec   (544 perm/sec)   p_kst 7.942983e-01   p_cons 6.753555e-05   p_joint 1.206161e-04

Joint ci ratio: 1.734001e-01	ci left: 1.103297e-04	ci right 1.314993e-04	k: 510	n:4230000
Cons ci ratio: 2.313824e-01	ci left: 6.000284e-05	ci right 7.591946e-05	k: 286	n:4230000
KS ci ratio: 9.699379e-04	ci left: 7.939121e-01	ci right 7.946828e-01	k: 3359879	n:4230000
UXS1   4230000 perm   7795 sec   (543 perm/sec)   p_kst 7.942976e-01   p_cons 6.761229e-05   p_joint 1.205674e-04

Joint ci ratio: 1.732307e-01	ci left: 1.102951e-04	ci right 1.314352e-04	k: 511	n:4240000
Cons ci ratio: 2.309803e-01	ci left: 6.008351e-05	ci right 7.598989e-05	k: 287	n:4240000
KS ci ratio: 9.687682e-04	ci left: 7.939211e-01	ci right 7.946908e-01	k: 3367858	n:4240000
UXS1   4240000 perm   7830 sec   (542 perm/sec)   p_kst 7.943061e-01   p_cons 6.768868e-05   p_joint 1.205189e-04

Joint ci ratio: 1.732307e-01	ci left: 1.100356e-04	ci right 1.311260e-04	k: 511	n:4250000
Cons ci ratio: 2.309804e-01	ci left: 5.994214e-05	ci right 7.581109e-05	k: 287	n:4250000
KS ci ratio: 9.675568e-04	ci left: 7.939455e-01	ci right 7.947143e-01	k: 3375903	n:4250000
UXS1   4250000 perm   7864 sec   (540 perm/sec)   p_kst 7.943301e-01   p_cons 6.752941e-05   p_joint 1.202353e-04

Joint ci ratio: 1.728933e-01	ci left: 1.102265e-04	ci right 1.313079e-04	k: 513	n:4260000
Cons ci ratio: 2.309804e-01	ci left: 5.980143e-05	ci right 7.563313e-05	k: 287	n:4260000
KS ci ratio: 9.664096e-04	ci left: 7.939497e-01	ci right 7.947175e-01	k: 3383862	n:4260000
UXS1   4260000 perm   7899 sec   (539 perm/sec)   p_kst 7.943338e-01   p_cons 6.737089e-05   p_joint 1.204225e-04

Joint ci ratio: 1.728934e-01	ci left: 1.099683e-04	ci right 1.310004e-04	k: 513	n:4270000
Cons ci ratio: 2.309804e-01	ci left: 5.966138e-05	ci right 7.545601e-05	k: 287	n:4270000
KS ci ratio: 9.652762e-04	ci left: 7.939505e-01	ci right 7.947175e-01	k: 3391807	n:4270000
UXS1   4270000 perm   7934 sec   (538 perm/sec)   p_kst 7.943342e-01   p_cons 6.721311e-05   p_joint 1.201405e-04

Joint ci ratio: 1.725580e-01	ci left: 1.101585e-04	ci right 1.311818e-04	k: 515	n:4280000
Cons ci ratio: 2.301825e-01	ci left: 5.996228e-05	ci right 7.577394e-05	k: 289	n:4280000
KS ci ratio: 9.641336e-04	ci left: 7.939558e-01	ci right 7.947219e-01	k: 3399771	n:4280000
UXS1   4280000 perm   7968 sec   (537 perm/sec)   p_kst 7.943390e-01   p_cons 6.752336e-05   p_joint 1.203271e-04

Joint ci ratio: 1.725580e-01	ci left: 1.099017e-04	ci right 1.308760e-04	k: 515	n:4290000
Cons ci ratio: 2.301825e-01	ci left: 5.982251e-05	ci right 7.559731e-05	k: 289	n:4290000
KS ci ratio: 9.630226e-04	ci left: 7.939517e-01	ci right 7.947169e-01	k: 3407695	n:4290000
UXS1   4290000 perm   8002 sec   (536 perm/sec)   p_kst 7.943345e-01   p_cons 6.736597e-05   p_joint 1.200466e-04

Joint ci ratio: 1.722245e-01	ci left: 1.100912e-04	ci right 1.310568e-04	k: 517	n:4300000
Cons ci ratio: 2.301825e-01	ci left: 5.968339e-05	ci right 7.542151e-05	k: 289	n:4300000
KS ci ratio: 9.619427e-04	ci left: 7.939383e-01	ci right 7.947027e-01	k: 3415579	n:4300000
UXS1   4300000 perm   8037 sec   (535 perm/sec)   p_kst 7.943207e-01   p_cons 6.720930e-05   p_joint 1.202326e-04

Joint ci ratio: 1.718930e-01	ci left: 1.102798e-04	ci right 1.312368e-04	k: 519	n:4310000
Cons ci ratio: 2.293929e-01	ci left: 5.998224e-05	ci right 7.573722e-05	k: 291	n:4310000
KS ci ratio: 9.608195e-04	ci left: 7.939411e-01	ci right 7.947045e-01	k: 3423532	n:4310000
UXS1   4310000 perm   8072 sec   (534 perm/sec)   p_kst 7.943230e-01   p_cons 6.751740e-05   p_joint 1.204176e-04

Joint ci ratio: 1.718930e-01	ci left: 1.100245e-04	ci right 1.309330e-04	k: 519	n:4320000
Cons ci ratio: 2.293929e-01	ci left: 5.984339e-05	ci right 7.556190e-05	k: 291	n:4320000
KS ci ratio: 9.597151e-04	ci left: 7.939387e-01	ci right 7.947012e-01	k: 3431463	n:4320000
UXS1   4320000 perm   8108 sec   (533 perm/sec)   p_kst 7.943201e-01   p_cons 6.736111e-05   p_joint 1.201389e-04

Joint ci ratio: 1.718930e-01	ci left: 1.097704e-04	ci right 1.306306e-04	k: 519	n:4330000
Cons ci ratio: 2.293929e-01	ci left: 5.970518e-05	ci right 7.538739e-05	k: 291	n:4330000
KS ci ratio: 9.586186e-04	ci left: 7.939349e-01	ci right 7.946966e-01	k: 3439388	n:4330000
UXS1   4330000 perm   8143 sec   (532 perm/sec)   p_kst 7.943159e-01   p_cons 6.720554e-05   p_joint 1.198614e-04

Joint ci ratio: 1.718931e-01	ci left: 1.095175e-04	ci right 1.303296e-04	k: 519	n:4340000
Cons ci ratio: 2.293929e-01	ci left: 5.956761e-05	ci right 7.521369e-05	k: 291	n:4340000
KS ci ratio: 9.575879e-04	ci left: 7.939099e-01	ci right 7.946708e-01	k: 3447221	n:4340000
UXS1   4340000 perm   8179 sec   (531 perm/sec)   p_kst 7.942906e-01   p_cons 6.705069e-05   p_joint 1.195853e-04

Joint ci ratio: 1.717280e-01	ci left: 1.094857e-04	ci right 1.302698e-04	k: 520	n:4350000
Cons ci ratio: 2.290011e-01	ci left: 5.964736e-05	ci right 7.528384e-05	k: 292	n:4350000
KS ci ratio: 9.564832e-04	ci left: 7.939116e-01	ci right 7.946715e-01	k: 3455169	n:4350000
UXS1   4350000 perm   8214 sec   (530 perm/sec)   p_kst 7.942917e-01   p_cons 6.712644e-05   p_joint 1.195402e-04

Joint ci ratio: 1.715634e-01	ci left: 1.094541e-04	ci right 1.302102e-04	k: 521	n:4360000
Cons ci ratio: 2.286113e-01	ci left: 5.972677e-05	ci right 7.535366e-05	k: 293	n:4360000
KS ci ratio: 9.553702e-04	ci left: 7.939173e-01	ci right 7.946764e-01	k: 3463135	n:4360000
UXS1   4360000 perm   8250 sec   (528 perm/sec)   p_kst 7.942970e-01   p_cons 6.720183e-05   p_joint 1.194954e-04

Joint ci ratio: 1.713994e-01	ci left: 1.094226e-04	ci right 1.301509e-04	k: 522	n:4370000
Cons ci ratio: 2.286113e-01	ci left: 5.959010e-05	ci right 7.518122e-05	k: 293	n:4370000
KS ci ratio: 9.542751e-04	ci left: 7.939182e-01	ci right 7.946764e-01	k: 3471080	n:4370000
UXS1   4370000 perm   8286 sec   (527 perm/sec)   p_kst 7.942975e-01   p_cons 6.704805e-05   p_joint 1.194508e-04

Joint ci ratio: 1.713994e-01	ci left: 1.091728e-04	ci right 1.298537e-04	k: 522	n:4380000
Cons ci ratio: 2.286113e-01	ci left: 5.945405e-05	ci right 7.500958e-05	k: 293	n:4380000
KS ci ratio: 9.532057e-04	ci left: 7.939115e-01	ci right 7.946689e-01	k: 3478992	n:4380000
UXS1   4380000 perm   8321 sec   (526 perm/sec)   p_kst 7.942904e-01   p_cons 6.689498e-05   p_joint 1.191781e-04

Joint ci ratio: 1.712358e-01	ci left: 1.091422e-04	ci right 1.297955e-04	k: 523	n:4390000
Cons ci ratio: 2.286114e-01	ci left: 5.931861e-05	ci right 7.483871e-05	k: 293	n:4390000
KS ci ratio: 9.520988e-04	ci left: 7.939191e-01	ci right 7.946755e-01	k: 3486966	n:4390000
UXS1   4390000 perm   8358 sec   (525 perm/sec)   p_kst 7.942975e-01   p_cons 6.674260e-05   p_joint 1.191344e-04

Joint ci ratio: 1.710726e-01	ci left: 1.091116e-04	ci right 1.297375e-04	k: 524	n:4400000
Cons ci ratio: 2.282235e-01	ci left: 5.939807e-05	ci right 7.490888e-05	k: 294	n:4400000
KS ci ratio: 9.509739e-04	ci left: 7.939341e-01	ci right 7.946896e-01	k: 3494973	n:4400000
UXS1   4400000 perm   8395 sec   (524 perm/sec)   p_kst 7.943120e-01   p_cons 6.681818e-05   p_joint 1.190909e-04

Joint ci ratio: 1.710726e-01	ci left: 1.088642e-04	ci right 1.294433e-04	k: 524	n:4410000
Cons ci ratio: 2.282236e-01	ci left: 5.926338e-05	ci right 7.473902e-05	k: 294	n:4410000
KS ci ratio: 9.499130e-04	ci left: 7.939283e-01	ci right 7.946831e-01	k: 3502889	n:4410000
UXS1   4410000 perm   8430 sec   (523 perm/sec)   p_kst 7.943059e-01   p_cons 6.666667e-05   p_joint 1.188209e-04

Joint ci ratio: 1.709099e-01	ci left: 1.088345e-04	ci right 1.293863e-04	k: 525	n:4420000
Cons ci ratio: 2.278377e-01	ci left: 5.934262e-05	ci right 7.480907e-05	k: 295	n:4420000
KS ci ratio: 9.488701e-04	ci left: 7.939177e-01	ci right 7.946716e-01	k: 3510783	n:4420000
UXS1   4420000 perm   8465 sec   (522 perm/sec)   p_kst 7.942948e-01   p_cons 6.674208e-05   p_joint 1.187783e-04

Joint ci ratio: 1.705859e-01	ci left: 1.090210e-04	ci right 1.295650e-04	k: 527	n:4430000
Cons ci ratio: 2.270718e-01	ci left: 5.963441e-05	ci right 7.511735e-05	k: 297	n:4430000
KS ci ratio: 9.477998e-04	ci left: 7.939176e-01	ci right 7.946707e-01	k: 3518724	n:4430000
UXS1   4430000 perm   8501 sec   (521 perm/sec)   p_kst 7.942944e-01   p_cons 6.704289e-05   p_joint 1.189616e-04

Joint ci ratio: 1.705859e-01	ci left: 1.087754e-04	ci right 1.292732e-04	k: 527	n:4440000
Cons ci ratio: 2.270719e-01	ci left: 5.950010e-05	ci right 7.494817e-05	k: 297	n:4440000
KS ci ratio: 9.467461e-04	ci left: 7.939131e-01	ci right 7.946653e-01	k: 3526645	n:4440000
UXS1   4440000 perm   8537 sec   (520 perm/sec)   p_kst 7.942894e-01   p_cons 6.689189e-05   p_joint 1.186937e-04

Joint ci ratio: 1.705860e-01	ci left: 1.085310e-04	ci right 1.289827e-04	k: 527	n:4450000
Cons ci ratio: 2.270719e-01	ci left: 5.936639e-05	ci right 7.477974e-05	k: 297	n:4450000
KS ci ratio: 9.456798e-04	ci left: 7.939142e-01	ci right 7.946656e-01	k: 3534591	n:4450000
UXS1   4450000 perm   8573 sec   (519 perm/sec)   p_kst 7.942901e-01   p_cons 6.674157e-05   p_joint 1.184270e-04

Joint ci ratio: 1.701034e-01	ci left: 1.089316e-04	ci right 1.293948e-04	k: 530	n:4460000
Cons ci ratio: 2.263137e-01	ci left: 5.965625e-05	ci right 7.508593e-05	k: 299	n:4460000
KS ci ratio: 9.446526e-04	ci left: 7.939030e-01	ci right 7.946535e-01	k: 3542482	n:4460000
UXS1   4460000 perm   8609 sec   (518 perm/sec)   p_kst 7.942785e-01   p_cons 6.704036e-05   p_joint 1.188341e-04

Joint ci ratio: 1.699434e-01	ci left: 1.089021e-04	ci right 1.293386e-04	k: 531	n:4470000
Cons ci ratio: 2.263137e-01	ci left: 5.952279e-05	ci right 7.491795e-05	k: 299	n:4470000
KS ci ratio: 9.436062e-04	ci left: 7.938997e-01	ci right 7.946494e-01	k: 3550408	n:4470000
UXS1   4470000 perm   8646 sec   (517 perm/sec)   p_kst 7.942747e-01   p_cons 6.689038e-05   p_joint 1.187919e-04

Joint ci ratio: 1.699434e-01	ci left: 1.086590e-04	ci right 1.290499e-04	k: 531	n:4480000
Cons ci ratio: 2.263137e-01	ci left: 5.938993e-05	ci right 7.475072e-05	k: 299	n:4480000
KS ci ratio: 9.425923e-04	ci left: 7.938863e-01	ci right 7.946352e-01	k: 3558289	n:4480000
UXS1   4480000 perm   8683 sec   (516 perm/sec)   p_kst 7.942609e-01   p_cons 6.674107e-05   p_joint 1.185268e-04

Joint ci ratio: 1.697840e-01	ci left: 1.086303e-04	ci right 1.289946e-04	k: 532	n:4490000
Cons ci ratio: 2.259374e-01	ci left: 5.946776e-05	ci right 7.481955e-05	k: 300	n:4490000
KS ci ratio: 9.415745e-04	ci left: 7.938754e-01	ci right 7.946235e-01	k: 3566181	n:4490000
UXS1   4490000 perm   8721 sec   (515 perm/sec)   p_kst 7.942497e-01   p_cons 6.681514e-05   p_joint 1.184855e-04

Joint ci ratio: 1.696249e-01	ci left: 1.086017e-04	ci right 1.289396e-04	k: 533	n:4500000
Cons ci ratio: 2.259375e-01	ci left: 5.933561e-05	ci right 7.465329e-05	k: 300	n:4500000
KS ci ratio: 9.404954e-04	ci left: 7.938871e-01	ci right 7.946343e-01	k: 3574174	n:4500000
UXS1   4500000 perm   8758 sec   (514 perm/sec)   p_kst 7.942609e-01   p_cons 6.666667e-05   p_joint 1.184444e-04

Joint ci ratio: 1.689931e-01	ci left: 1.092102e-04	ci right 1.295782e-04	k: 537	n:4510000
Cons ci ratio: 2.251905e-01	ci left: 5.962245e-05	ci right 7.495623e-05	k: 302	n:4510000
KS ci ratio: 9.394697e-04	ci left: 7.938814e-01	ci right 7.946278e-01	k: 3582089	n:4510000
UXS1   4510000 perm   8795 sec   (513 perm/sec)   p_kst 7.942548e-01   p_cons 6.696231e-05   p_joint 1.190687e-04

Joint ci ratio: 1.689931e-01	ci left: 1.089686e-04	ci right 1.292915e-04	k: 537	n:4520000
Cons ci ratio: 2.251905e-01	ci left: 5.949054e-05	ci right 7.479040e-05	k: 302	n:4520000
KS ci ratio: 9.384385e-04	ci left: 7.938788e-01	ci right 7.946244e-01	k: 3590018	n:4520000
UXS1   4520000 perm   8830 sec   (512 perm/sec)   p_kst 7.942518e-01   p_cons 6.681416e-05   p_joint 1.188053e-04

Joint ci ratio: 1.688363e-01	ci left: 1.089395e-04	ci right 1.292362e-04	k: 538	n:4530000
Cons ci ratio: 2.248199e-01	ci left: 5.956752e-05	ci right 7.485847e-05	k: 303	n:4530000
KS ci ratio: 9.373993e-04	ci left: 7.938802e-01	ci right 7.946249e-01	k: 3597965	n:4530000
UXS1   4530000 perm   8867 sec   (511 perm/sec)   p_kst 7.942528e-01   p_cons 6.688742e-05   p_joint 1.187638e-04

Joint ci ratio: 1.688363e-01	ci left: 1.086995e-04	ci right 1.289515e-04	k: 538	n:4540000
Cons ci ratio: 2.248199e-01	ci left: 5.943631e-05	ci right 7.469358e-05	k: 303	n:4540000
KS ci ratio: 9.363257e-04	ci left: 7.938948e-01	ci right 7.946387e-01	k: 3605972	n:4540000
UXS1   4540000 perm   8903 sec   (510 perm/sec)   p_kst 7.942670e-01   p_cons 6.674009e-05   p_joint 1.185022e-04

Joint ci ratio: 1.683684e-01	ci left: 1.090921e-04	ci right 1.293552e-04	k: 541	n:4550000
Cons ci ratio: 2.237186e-01	ci left: 5.992799e-05	ci right 7.522574e-05	k: 306	n:4550000
KS ci ratio: 9.353123e-04	ci left: 7.938896e-01	ci right 7.946327e-01	k: 3613889	n:4550000
UXS1   4550000 perm   8940 sec   (509 perm/sec)   p_kst 7.942613e-01   p_cons 6.725275e-05   p_joint 1.189011e-04

Joint ci ratio: 1.683684e-01	ci left: 1.088529e-04	ci right 1.290716e-04	k: 541	n:4560000
Cons ci ratio: 2.237187e-01	ci left: 5.979657e-05	ci right 7.506077e-05	k: 306	n:4560000
KS ci ratio: 9.342797e-04	ci left: 7.938923e-01	ci right 7.946345e-01	k: 3621842	n:4560000
UXS1   4560000 perm   8977 sec   (508 perm/sec)   p_kst 7.942636e-01   p_cons 6.710526e-05   p_joint 1.186404e-04

Joint ci ratio: 1.677505e-01	ci left: 1.094532e-04	ci right 1.297012e-04	k: 545	n:4570000
Cons ci ratio: 2.226335e-01	ci left: 6.028548e-05	ci right 7.558961e-05	k: 309	n:4570000
KS ci ratio: 9.332405e-04	ci left: 7.938985e-01	ci right 7.946399e-01	k: 3629811	n:4570000
UXS1   4570000 perm   9014 sec   (507 perm/sec)   p_kst 7.942694e-01   p_cons 6.761488e-05   p_joint 1.192560e-04

Joint ci ratio: 1.677505e-01	ci left: 1.092142e-04	ci right 1.294180e-04	k: 545	n:4580000
Cons ci ratio: 2.226335e-01	ci left: 6.015386e-05	ci right 7.542457e-05	k: 309	n:4580000
KS ci ratio: 9.321730e-04	ci left: 7.939158e-01	ci right 7.946564e-01	k: 3637831	n:4580000
UXS1   4580000 perm   9051 sec   (506 perm/sec)   p_kst 7.942862e-01   p_cons 6.746725e-05   p_joint 1.189956e-04

Joint ci ratio: 1.671393e-01	ci left: 1.098112e-04	ci right 1.300440e-04	k: 549	n:4590000
Cons ci ratio: 2.215639e-01	ci left: 6.064004e-05	ci right 7.595014e-05	k: 312	n:4590000
KS ci ratio: 9.311488e-04	ci left: 7.939190e-01	ci right 7.946588e-01	k: 3645787	n:4590000
UXS1   4590000 perm   9087 sec   (505 perm/sec)   p_kst 7.942891e-01   p_cons 6.797386e-05   p_joint 1.196078e-04

Joint ci ratio: 1.671394e-01	ci left: 1.095725e-04	ci right 1.297613e-04	k: 549	n:4600000
Cons ci ratio: 2.215639e-01	ci left: 6.050821e-05	ci right 7.578503e-05	k: 312	n:4600000
KS ci ratio: 9.301082e-04	ci left: 7.939292e-01	ci right 7.946682e-01	k: 3653775	n:4600000
UXS1   4600000 perm   9124 sec   (504 perm/sec)   p_kst 7.942989e-01   p_cons 6.782609e-05   p_joint 1.193478e-04

Joint ci ratio: 1.668363e-01	ci left: 1.097505e-04	ci right 1.299317e-04	k: 551	n:4610000
Cons ci ratio: 2.212108e-01	ci left: 6.058185e-05	ci right 7.584957e-05	k: 313	n:4610000
KS ci ratio: 9.291106e-04	ci left: 7.939255e-01	ci right 7.946637e-01	k: 3661699	n:4610000
UXS1   4610000 perm   9161 sec   (503 perm/sec)   p_kst 7.942948e-01   p_cons 6.789588e-05   p_joint 1.195228e-04

Joint ci ratio: 1.663847e-01	ci left: 1.101352e-04	ci right 1.303269e-04	k: 554	n:4620000
Cons ci ratio: 2.205097e-01	ci left: 6.085968e-05	ci right 7.614220e-05	k: 315	n:4620000
KS ci ratio: 9.281143e-04	ci left: 7.939225e-01	ci right 7.946599e-01	k: 3669626	n:4620000
UXS1   4620000 perm   9197 sec   (502 perm/sec)   p_kst 7.942913e-01   p_cons 6.818182e-05   p_joint 1.199134e-04

Joint ci ratio: 1.660857e-01	ci left: 1.103113e-04	ci right 1.304953e-04	k: 556	n:4630000
Cons ci ratio: 2.205097e-01	ci left: 6.072823e-05	ci right 7.597774e-05	k: 315	n:4630000
KS ci ratio: 9.271360e-04	ci left: 7.939142e-01	ci right 7.946508e-01	k: 3677529	n:4630000
UXS1   4630000 perm   9234 sec   (501 perm/sec)   p_kst 7.942827e-01   p_cons 6.803456e-05   p_joint 1.200864e-04

Joint ci ratio: 1.657883e-01	ci left: 1.104867e-04	ci right 1.306630e-04	k: 558	n:4640000
Cons ci ratio: 2.201616e-01	ci left: 6.080097e-05	ci right 7.604139e-05	k: 316	n:4640000
KS ci ratio: 9.261387e-04	ci left: 7.939138e-01	ci right 7.946496e-01	k: 3685468	n:4640000
UXS1   4640000 perm   9272 sec   (500 perm/sec)   p_kst 7.942819e-01   p_cons 6.810345e-05   p_joint 1.202586e-04

Joint ci ratio: 1.656402e-01	ci left: 1.104553e-04	ci right 1.306060e-04	k: 559	n:4650000
Cons ci ratio: 2.198151e-01	ci left: 6.087342e-05	ci right 7.610474e-05	k: 317	n:4650000
KS ci ratio: 9.251398e-04	ci left: 7.939151e-01	ci right 7.946501e-01	k: 3693415	n:4650000
UXS1   4650000 perm   9309 sec   (500 perm/sec)   p_kst 7.942828e-01   p_cons 6.817204e-05   p_joint 1.202151e-04

Joint ci ratio: 1.656403e-01	ci left: 1.102182e-04	ci right 1.303257e-04	k: 559	n:4660000
Cons ci ratio: 2.198152e-01	ci left: 6.074279e-05	ci right 7.594143e-05	k: 317	n:4660000
KS ci ratio: 9.241501e-04	ci left: 7.939142e-01	ci right 7.946485e-01	k: 3701352	n:4660000
UXS1   4660000 perm   9346 sec   (499 perm/sec)   p_kst 7.942815e-01   p_cons 6.802575e-05   p_joint 1.199571e-04

Joint ci ratio: 1.651983e-01	ci left: 1.105980e-04	ci right 1.307156e-04	k: 562	n:4670000
Cons ci ratio: 2.191271e-01	ci left: 6.101745e-05	ci right 7.623058e-05	k: 319	n:4670000
KS ci ratio: 9.231794e-04	ci left: 7.939078e-01	ci right 7.946413e-01	k: 3709263	n:4670000
UXS1   4670000 perm   9384 sec   (498 perm/sec)   p_kst 7.942747e-01   p_cons 6.830835e-05   p_joint 1.203426e-04

Joint ci ratio: 1.649057e-01	ci left: 1.107714e-04	ci right 1.308813e-04	k: 564	n:4680000
Cons ci ratio: 2.184455e-01	ci left: 6.129101e-05	ci right 7.651843e-05	k: 321	n:4680000
KS ci ratio: 9.222177e-04	ci left: 7.938993e-01	ci right 7.946320e-01	k: 3717164	n:4680000
UXS1   4680000 perm   9421 sec   (497 perm/sec)   p_kst 7.942658e-01   p_cons 6.858974e-05   p_joint 1.205128e-04

Joint ci ratio: 1.647599e-01	ci left: 1.107396e-04	ci right 1.308242e-04	k: 565	n:4690000
Cons ci ratio: 2.181071e-01	ci left: 6.136189e-05	ci right 7.658013e-05	k: 322	n:4690000
KS ci ratio: 9.212651e-04	ci left: 7.938887e-01	ci right 7.946206e-01	k: 3725055	n:4690000
UXS1   4690000 perm   9458 sec   (496 perm/sec)   p_kst 7.942548e-01   p_cons 6.865672e-05   p_joint 1.204691e-04

Joint ci ratio: 1.646146e-01	ci left: 1.107080e-04	ci right 1.307674e-04	k: 566	n:4700000
Cons ci ratio: 2.181071e-01	ci left: 6.123133e-05	ci right 7.641720e-05	k: 322	n:4700000
KS ci ratio: 9.202992e-04	ci left: 7.938838e-01	ci right 7.946150e-01	k: 3732973	n:4700000
UXS1   4700000 perm   9496 sec   (495 perm/sec)   p_kst 7.942496e-01   p_cons 6.851064e-05   p_joint 1.204255e-04

Joint ci ratio: 1.644696e-01	ci left: 1.106765e-04	ci right 1.307108e-04	k: 567	n:4710000
Cons ci ratio: 2.177703e-01	ci left: 6.130205e-05	ci right 7.647884e-05	k: 323	n:4710000
KS ci ratio: 9.193525e-04	ci left: 7.938733e-01	ci right 7.946037e-01	k: 3740864	n:4710000
UXS1   4710000 perm   9536 sec   (494 perm/sec)   p_kst 7.942386e-01   p_cons 6.857749e-05   p_joint 1.203822e-04

Joint ci ratio: 1.644696e-01	ci left: 1.104421e-04	ci right 1.304339e-04	k: 567	n:4720000
Cons ci ratio: 2.177703e-01	ci left: 6.117217e-05	ci right 7.631681e-05	k: 323	n:4720000
KS ci ratio: 9.183819e-04	ci left: 7.938723e-01	ci right 7.946019e-01	k: 3748800	n:4720000
UXS1   4720000 perm   9574 sec   (493 perm/sec)   p_kst 7.942373e-01   p_cons 6.843220e-05   p_joint 1.201271e-04

Joint ci ratio: 1.644697e-01	ci left: 1.102086e-04	ci right 1.301581e-04	k: 567	n:4730000
Cons ci ratio: 2.177703e-01	ci left: 6.104284e-05	ci right 7.615546e-05	k: 323	n:4730000
KS ci ratio: 9.174197e-04	ci left: 7.938694e-01	ci right 7.945983e-01	k: 3756727	n:4730000
UXS1   4730000 perm   9612 sec   (492 perm/sec)   p_kst 7.942340e-01   p_cons 6.828753e-05   p_joint 1.198732e-04

Joint ci ratio: 1.641808e-01	ci left: 1.103806e-04	ci right 1.303228e-04	k: 569	n:4740000
Cons ci ratio: 2.171012e-01	ci left: 6.131303e-05	ci right 7.643968e-05	k: 325	n:4740000
KS ci ratio: 9.164055e-04	ci left: 7.938862e-01	ci right 7.946143e-01	k: 3764747	n:4740000
UXS1   4740000 perm   9650 sec   (491 perm/sec)   p_kst 7.942504e-01   p_cons 6.856540e-05   p_joint 1.200422e-04

Joint ci ratio: 1.631818e-01	ci left: 1.115616e-04	ci right 1.315824e-04	k: 576	n:4750000
Cons ci ratio: 2.154552e-01	ci left: 6.217957e-05	ci right 7.738831e-05	k: 330	n:4750000
KS ci ratio: 9.154418e-04	ci left: 7.938861e-01	ci right 7.946134e-01	k: 3772687	n:4750000
UXS1   4750000 perm   9687 sec   (490 perm/sec)   p_kst 7.942499e-01   p_cons 6.947368e-05   p_joint 1.212632e-04

Joint ci ratio: 1.627592e-01	ci left: 1.119318e-04	ci right 1.319619e-04	k: 579	n:4760000
Cons ci ratio: 2.148071e-01	ci left: 6.244647e-05	ci right 7.766850e-05	k: 332	n:4760000
KS ci ratio: 9.145000e-04	ci left: 7.938792e-01	ci right 7.946057e-01	k: 3780595	n:4760000
UXS1   4760000 perm   9726 sec   (489 perm/sec)   p_kst 7.942426e-01   p_cons 6.974790e-05   p_joint 1.216387e-04

Joint ci ratio: 1.626191e-01	ci left: 1.118982e-04	ci right 1.319035e-04	k: 580	n:4770000
Cons ci ratio: 2.148072e-01	ci left: 6.231555e-05	ci right 7.750567e-05	k: 332	n:4770000
KS ci ratio: 9.135353e-04	ci left: 7.938816e-01	ci right 7.946074e-01	k: 3788547	n:4770000
UXS1   4770000 perm   9763 sec   (489 perm/sec)   p_kst 7.942447e-01   p_cons 6.960168e-05   p_joint 1.215933e-04

Joint ci ratio: 1.624793e-01	ci left: 1.118648e-04	ci right 1.318452e-04	k: 581	n:4780000
Cons ci ratio: 2.144853e-01	ci left: 6.238315e-05	ci right 7.756396e-05	k: 333	n:4780000
KS ci ratio: 9.125672e-04	ci left: 7.938863e-01	ci right 7.946113e-01	k: 3796510	n:4780000
UXS1   4780000 perm   9800 sec   (488 perm/sec)   p_kst 7.942490e-01   p_cons 6.966527e-05   p_joint 1.215481e-04

Joint ci ratio: 1.619238e-01	ci left: 1.124325e-04	ci right 1.324389e-04	k: 585	n:4790000
Cons ci ratio: 2.138460e-01	ci left: 6.264805e-05	ci right 7.784193e-05	k: 335	n:4790000
KS ci ratio: 9.116359e-04	ci left: 7.938788e-01	ci right 7.946031e-01	k: 3804415	n:4790000
UXS1   4790000 perm   9838 sec   (487 perm/sec)   p_kst 7.942411e-01   p_cons 6.993737e-05   p_joint 1.221294e-04

Joint ci ratio: 1.619238e-01	ci left: 1.121982e-04	ci right 1.321630e-04	k: 585	n:4800000
Cons ci ratio: 2.138460e-01	ci left: 6.251754e-05	ci right 7.767976e-05	k: 335	n:4800000
KS ci ratio: 9.106861e-04	ci left: 7.938791e-01	ci right 7.946026e-01	k: 3812357	n:4800000
UXS1   4800000 perm   9877 sec   (486 perm/sec)   p_kst 7.942410e-01   p_cons 6.979167e-05   p_joint 1.218750e-04

Joint ci ratio: 1.616482e-01	ci left: 1.123639e-04	ci right 1.323208e-04	k: 587	n:4810000
Cons ci ratio: 2.135285e-01	ci left: 6.258434e-05	ci right 7.773727e-05	k: 336	n:4810000
KS ci ratio: 9.097137e-04	ci left: 7.938886e-01	ci right 7.946113e-01	k: 3820343	n:4810000
UXS1   4810000 perm   9915 sec   (485 perm/sec)   p_kst 7.942501e-01   p_cons 6.985447e-05   p_joint 1.220374e-04

Joint ci ratio: 1.616482e-01	ci left: 1.121308e-04	ci right 1.320463e-04	k: 587	n:4820000
Cons ci ratio: 2.135285e-01	ci left: 6.245449e-05	ci right 7.757599e-05	k: 336	n:4820000
KS ci ratio: 9.087311e-04	ci left: 7.939027e-01	ci right 7.946247e-01	k: 3828352	n:4820000
UXS1   4820000 perm   9954 sec   (484 perm/sec)   p_kst 7.942639e-01   p_cons 6.970954e-05   p_joint 1.217842e-04

Joint ci ratio: 1.615109e-01	ci left: 1.120973e-04	ci right 1.319883e-04	k: 588	n:4830000
Cons ci ratio: 2.132124e-01	ci left: 6.252116e-05	ci right 7.763346e-05	k: 337	n:4830000
KS ci ratio: 9.078139e-04	ci left: 7.938945e-01	ci right 7.946157e-01	k: 3836253	n:4830000
UXS1   4830000 perm   9991 sec   (483 perm/sec)   p_kst 7.942553e-01   p_cons 6.977226e-05   p_joint 1.217391e-04

Joint ci ratio: 1.613740e-01	ci left: 1.120640e-04	ci right 1.319306e-04	k: 589	n:4840000
Cons ci ratio: 2.128977e-01	ci left: 6.258758e-05	ci right 7.769068e-05	k: 338	n:4840000
KS ci ratio: 9.069160e-04	ci left: 7.938803e-01	ci right 7.946008e-01	k: 3844125	n:4840000
UXS1   4840000 perm   10030 sec   (483 perm/sec)   p_kst 7.942407e-01   p_cons 6.983471e-05   p_joint 1.216942e-04

Joint ci ratio: 1.613740e-01	ci left: 1.118329e-04	ci right 1.316586e-04	k: 589	n:4850000
Cons ci ratio: 2.128977e-01	ci left: 6.245853e-05	ci right 7.753050e-05	k: 338	n:4850000
KS ci ratio: 9.059259e-04	ci left: 7.939004e-01	ci right 7.946201e-01	k: 3852163	n:4850000
UXS1   4850000 perm   10068 sec   (482 perm/sec)   p_kst 7.942604e-01   p_cons 6.969072e-05   p_joint 1.214433e-04

Joint ci ratio: 1.612374e-01	ci left: 1.118003e-04	ci right 1.316017e-04	k: 590	n:4860000
Cons ci ratio: 2.125844e-01	ci left: 6.252481e-05	ci right 7.758768e-05	k: 339	n:4860000
KS ci ratio: 9.049670e-04	ci left: 7.939103e-01	ci right 7.946293e-01	k: 3860152	n:4860000
UXS1   4860000 perm   10106 sec   (481 perm/sec)   p_kst 7.942700e-01   p_cons 6.975309e-05   p_joint 1.213992e-04

Joint ci ratio: 1.612375e-01	ci left: 1.115707e-04	ci right 1.313315e-04	k: 590	n:4870000
Cons ci ratio: 2.125844e-01	ci left: 6.239642e-05	ci right 7.742836e-05	k: 339	n:4870000
KS ci ratio: 9.040622e-04	ci left: 7.939017e-01	ci right 7.946199e-01	k: 3868051	n:4870000
UXS1   4870000 perm   10144 sec   (480 perm/sec)   p_kst 7.942610e-01   p_cons 6.960986e-05   p_joint 1.211499e-04

Joint ci ratio: 1.609653e-01	ci left: 1.117354e-04	ci right 1.314887e-04	k: 592	n:4880000
Cons ci ratio: 2.119619e-01	ci left: 6.265661e-05	ci right 7.770128e-05	k: 341	n:4880000
KS ci ratio: 9.031137e-04	ci left: 7.939099e-01	ci right 7.946274e-01	k: 3876032	n:4880000
UXS1   4880000 perm   10184 sec   (479 perm/sec)   p_kst 7.942689e-01   p_cons 6.987705e-05   p_joint 1.213115e-04

Joint ci ratio: 1.605597e-01	ci left: 1.120957e-04	ci right 1.318580e-04	k: 595	n:4890000
Cons ci ratio: 2.113448e-01	ci left: 6.291580e-05	ci right 7.797303e-05	k: 343	n:4890000
KS ci ratio: 9.022105e-04	ci left: 7.939028e-01	ci right 7.946196e-01	k: 3883938	n:4890000
UXS1   4890000 perm   10223 sec   (478 perm/sec)   p_kst 7.942613e-01   p_cons 7.014315e-05   p_joint 1.216769e-04

Joint ci ratio: 1.601571e-01	ci left: 1.124546e-04	ci right 1.322257e-04	k: 598	n:4900000
Cons ci ratio: 2.107330e-01	ci left: 6.317400e-05	ci right 7.824360e-05	k: 345	n:4900000
KS ci ratio: 9.013027e-04	ci left: 7.938983e-01	ci right 7.946144e-01	k: 3891857	n:4900000
UXS1   4900000 perm   10262 sec   (477 perm/sec)   p_kst 7.942565e-01   p_cons 7.040816e-05   p_joint 1.220408e-04

Joint ci ratio: 1.600235e-01	ci left: 1.124211e-04	ci right 1.321682e-04	k: 599	n:4910000
Cons ci ratio: 2.107331e-01	ci left: 6.304533e-05	ci right 7.808425e-05	k: 345	n:4910000
KS ci ratio: 9.003685e-04	ci left: 7.939045e-01	ci right 7.946198e-01	k: 3899828	n:4910000
UXS1   4910000 perm   10301 sec   (477 perm/sec)   p_kst 7.942623e-01   p_cons 7.026477e-05   p_joint 1.219959e-04

Joint ci ratio: 1.598904e-01	ci left: 1.123877e-04	ci right 1.321109e-04	k: 600	n:4920000
Cons ci ratio: 2.104292e-01	ci left: 6.310972e-05	ci right 7.813949e-05	k: 346	n:4920000
KS ci ratio: 8.994735e-04	ci left: 7.938974e-01	ci right 7.946120e-01	k: 3907734	n:4920000
UXS1   4920000 perm   10340 sec   (476 perm/sec)   p_kst 7.942549e-01   p_cons 7.032520e-05   p_joint 1.219512e-04

Joint ci ratio: 1.598904e-01	ci left: 1.121597e-04	ci right 1.318430e-04	k: 600	n:4930000
Cons ci ratio: 2.104292e-01	ci left: 6.298171e-05	ci right 7.798100e-05	k: 346	n:4930000
KS ci ratio: 8.985912e-04	ci left: 7.938867e-01	ci right 7.946006e-01	k: 3915622	n:4930000
UXS1   4930000 perm   10380 sec   (475 perm/sec)   p_kst 7.942438e-01   p_cons 7.018256e-05   p_joint 1.217039e-04

Joint ci ratio: 1.597575e-01	ci left: 1.121270e-04	ci right 1.317866e-04	k: 601	n:4940000
Cons ci ratio: 2.101266e-01	ci left: 6.304599e-05	ci right 7.803621e-05	k: 347	n:4940000
KS ci ratio: 8.977110e-04	ci left: 7.938762e-01	ci right 7.945894e-01	k: 3923511	n:4940000
UXS1   4940000 perm   10419 sec   (474 perm/sec)   p_kst 7.942330e-01   p_cons 7.024291e-05   p_joint 1.216599e-04

Joint ci ratio: 1.596250e-01	ci left: 1.120945e-04	ci right 1.317305e-04	k: 602	n:4950000
Cons ci ratio: 2.101266e-01	ci left: 6.291862e-05	ci right 7.787857e-05	k: 347	n:4950000
KS ci ratio: 8.968172e-04	ci left: 7.938717e-01	ci right 7.945841e-01	k: 3931429	n:4950000
UXS1   4950000 perm   10459 sec   (473 perm/sec)   p_kst 7.942281e-01   p_cons 7.010101e-05   p_joint 1.216162e-04

Joint ci ratio: 1.594928e-01	ci left: 1.120620e-04	ci right 1.316745e-04	k: 603	n:4960000
Cons ci ratio: 2.098254e-01	ci left: 6.298278e-05	ci right 7.793375e-05	k: 348	n:4960000
KS ci ratio: 8.959316e-04	ci left: 7.938651e-01	ci right 7.945769e-01	k: 3939337	n:4960000
UXS1   4960000 perm   10498 sec   (472 perm/sec)   p_kst 7.942212e-01   p_cons 7.016129e-05   p_joint 1.215726e-04

Joint ci ratio: 1.593609e-01	ci left: 1.120297e-04	ci right 1.316188e-04	k: 604	n:4970000
Cons ci ratio: 2.095254e-01	ci left: 6.304670e-05	ci right 7.798870e-05	k: 349	n:4970000
KS ci ratio: 8.950030e-04	ci left: 7.938753e-01	ci right 7.945863e-01	k: 3947328	n:4970000
UXS1   4970000 perm   10538 sec   (472 perm/sec)   p_kst 7.942310e-01   p_cons 7.022133e-05   p_joint 1.215292e-04

Joint ci ratio: 1.593610e-01	ci left: 1.118048e-04	ci right 1.313545e-04	k: 604	n:4980000
Cons ci ratio: 2.095254e-01	ci left: 6.292010e-05	ci right 7.783210e-05	k: 349	n:4980000
KS ci ratio: 8.941008e-04	ci left: 7.938768e-01	ci right 7.945871e-01	k: 3955276	n:4980000
UXS1   4980000 perm   10578 sec   (471 perm/sec)   p_kst 7.942321e-01   p_cons 7.008032e-05   p_joint 1.212851e-04

Joint ci ratio: 1.593610e-01	ci left: 1.115807e-04	ci right 1.310913e-04	k: 604	n:4990000
Cons ci ratio: 2.095254e-01	ci left: 6.279401e-05	ci right 7.767612e-05	k: 349	n:4990000
KS ci ratio: 8.932046e-04	ci left: 7.938771e-01	ci right 7.945867e-01	k: 3963218	n:4990000
UXS1   4990000 perm   10618 sec   (470 perm/sec)   p_kst 7.942321e-01   p_cons 6.993988e-05   p_joint 1.210421e-04

Joint ci ratio: 1.593610e-01	ci left: 1.113575e-04	ci right 1.308291e-04	k: 604	n:5000000
Cons ci ratio: 2.095255e-01	ci left: 6.266842e-05	ci right 7.752077e-05	k: 349	n:5000000
KS ci ratio: 8.922680e-04	ci left: 7.938932e-01	ci right 7.946021e-01	k: 3971239	n:5000000
UXS1   5000000 perm   10658 sec   (469 perm/sec)   p_kst 7.942478e-01   p_cons 6.980000e-05   p_joint 1.208000e-04

Outputting figure to mutsig2_images.part000000000188/UXS1.4_1323_5000000_0.79425_6.98e-05_0.0001208.png
                gene_name: UXS1
               theta_stop: 0.21 
                    nperm: 5000000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.79 
                   p_cons: 6.98e-05 
      ci_cons_bounds_left: 6.27e-05 
     ci_cons_bounds_right: 7.75e-05 
                  p_joint: 0.00012 
     ci_joint_bounds_left: 0.00011 
    ci_joint_bounds_right: 0.00013 

Current progress: 41 percent done.
VAC14
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.205725e-02	ci left: 1.781208e-01	ci right 1.934627e-01	k: 1857	n:10000
Cons ci ratio: 5.539147e-02	ci left: 3.243584e-01	ci right 3.429386e-01	k: 3336	n:10000
KS ci ratio: 1.324787e-01	ci left: 7.514340e-02	ci right 8.590246e-02	k: 804	n:10000
VAC14   10000 perm   2 sec   (5830 perm/sec)   p_kst 8.040000e-02   p_cons 3.336000e-01   p_joint 1.857000e-01

Joint ci ratio: 1.007989e-01	ci left: 6.674574e-02	ci right 7.387980e-02	k: 1405	n:20000
Cons ci ratio: 3.860635e-02	ci left: 3.335330e-01	ci right 3.467135e-01	k: 6802	n:20000
KS ci ratio: 9.516495e-02	ci left: 7.446665e-02	ci right 8.195653e-02	k: 1563	n:20000
VAC14   20000 perm   4 sec   (5197 perm/sec)   p_kst 7.815000e-02   p_cons 3.401000e-01   p_joint 7.025000e-02

Joint ci ratio: 8.454467e-02	ci left: 6.403277e-02	ci right 6.971813e-02	k: 2005	n:30000
Cons ci ratio: 3.155592e-02	ci left: 3.342734e-01	ci right 3.450243e-01	k: 10189	n:30000
KS ci ratio: 7.806395e-02	ci left: 7.449868e-02	ci right 8.058343e-02	k: 2325	n:30000
VAC14   30000 perm   6 sec   (4927 perm/sec)   p_kst 7.750000e-02   p_cons 3.396333e-01   p_joint 6.683333e-02

Outputting figure to mutsig2_images.part000000000188/VAC14.3_2425_30000_0.0775_0.33963_0.066833.png
                gene_name: VAC14
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.077 
        ci_ks_bounds_left: 0.074 
       ci_ks_bounds_right: 0.081 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.067 
     ci_joint_bounds_left: 0.064 
    ci_joint_bounds_right: 0.070 

Current progress: 43 percent done.
VARS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.187607e-02	ci left: 2.774536e-01	ci right 2.952710e-01	k: 2863	n:10000
Cons ci ratio: 6.038129e-02	ci left: 2.874598e-01	ci right 3.054589e-01	k: 2964	n:10000
KS ci ratio: 7.644396e-02	ci left: 2.001794e-01	ci right 2.161909e-01	k: 2081	n:10000
VARS   10000 perm   2 sec   (5130 perm/sec)   p_kst 2.081000e-01   p_cons 2.964000e-01   p_joint 2.863000e-01

Outputting figure to mutsig2_images.part000000000188/VARS.4_3911_10000_0.2081_0.2964_0.2863.png
                gene_name: VARS
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 46 percent done.
VAV2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.202549e-01	ci left: 2.731161e-02	ci right 3.416536e-02	k: 306	n:10000
Cons ci ratio: 1.327479e-01	ci left: 7.485257e-02	ci right 8.559347e-02	k: 801	n:10000
KS ci ratio: 1.183862e-01	ci left: 9.292171e-02	ci right 1.047132e-01	k: 987	n:10000
VAV2   10000 perm   2 sec   (5504 perm/sec)   p_kst 9.870000e-02   p_cons 8.010000e-02   p_joint 3.060000e-02

Joint ci ratio: 1.053865e-01	ci left: 6.128043e-02	ci right 6.814678e-02	k: 1293	n:20000
Cons ci ratio: 9.280368e-02	ci left: 7.808672e-02	ci right 8.573535e-02	k: 1637	n:20000
KS ci ratio: 8.326984e-02	ci left: 9.558124e-02	ci right 1.039355e-01	k: 1994	n:20000
VAV2   20000 perm   4 sec   (4933 perm/sec)   p_kst 9.970000e-02   p_cons 8.185000e-02   p_joint 6.465000e-02

Joint ci ratio: 7.131347e-02	ci left: 8.822763e-02	ci right 9.478506e-02	k: 2744	n:30000
Cons ci ratio: 7.496317e-02	ci left: 8.039339e-02	ci right 8.668754e-02	k: 2505	n:30000
KS ci ratio: 6.860925e-02	ci left: 9.475646e-02	ci right 1.015216e-01	k: 2943	n:30000
VAV2   30000 perm   6 sec   (4687 perm/sec)   p_kst 9.810000e-02   p_cons 8.350000e-02   p_joint 9.146667e-02

Outputting figure to mutsig2_images.part000000000188/VAV2.4_2757_30000_0.0981_0.0835_0.091467.png
                gene_name: VAV2
               theta_stop: 0.075 
                    nperm: 30000 
                     p_ks: 0.098 
        ci_ks_bounds_left: 0.095 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.084 
      ci_cons_bounds_left: 0.080 
     ci_cons_bounds_right: 0.087 
                  p_joint: 0.091 
     ci_joint_bounds_left: 0.088 
    ci_joint_bounds_right: 0.095 

Current progress: 48 percent done.
VDR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.774222e-02	ci left: 8.224919e-01	ci right 8.373154e-01	k: 8300	n:10000
KS ci ratio: 1.067731e-02	ci left: 9.258557e-01	ci right 9.358915e-01	k: 9310	n:10000
VDR   10000 perm   2 sec   (6011 perm/sec)   p_kst 9.310000e-01   p_cons 8.300000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000188/VDR.4_1316_10000_0.931_0.83_1.png
                gene_name: VDR
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
VGLL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.293560e-02	ci left: 1.749728e-01	ci right 1.902126e-01	k: 1825	n:10000
Cons ci ratio: 1.038522e-01	ci left: 1.181869e-01	ci right 1.312326e-01	k: 1246	n:10000
KS ci ratio: 6.985136e-02	ci left: 2.310633e-01	ci right 2.478887e-01	k: 2394	n:10000
VGLL3   10000 perm   2 sec   (6614 perm/sec)   p_kst 2.394000e-01   p_cons 1.246000e-01   p_joint 1.825000e-01

Joint ci ratio: 6.872731e-02	ci left: 1.350709e-01	ci right 1.447341e-01	k: 2797	n:20000
Cons ci ratio: 7.362152e-02	ci left: 1.195606e-01	ci right 1.287490e-01	k: 2482	n:20000
KS ci ratio: 4.967239e-02	ci left: 2.315166e-01	ci right 2.433598e-01	k: 4748	n:20000
VGLL3   20000 perm   3 sec   (5847 perm/sec)   p_kst 2.374000e-01   p_cons 1.241000e-01   p_joint 1.398500e-01

Outputting figure to mutsig2_images.part000000000188/VGLL3.4_997_20000_0.2374_0.1241_0.13985.png
                gene_name: VGLL3
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.14 

Current progress: 52 percent done.
USP46
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.455385e-02	ci left: 8.723452e-01	ci right 8.852332e-01	k: 8789	n:10000
Cons ci ratio: 2.699424e-02	ci left: 6.690435e-01	ci right 6.874525e-01	k: 6783	n:10000
KS ci ratio: 4.160355e-02	ci left: 4.603775e-01	ci right 4.800399e-01	k: 4702	n:10000
USP46   10000 perm   2 sec   (6472 perm/sec)   p_kst 4.702000e-01   p_cons 6.783000e-01   p_joint 8.789000e-01

Outputting figure to mutsig2_images.part000000000188/USP46.3_1156_10000_0.4702_0.6783_0.8789.png
                gene_name: USP46
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.89 

Current progress: 54 percent done.
USP9Y
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.925190e-02	ci left: 1.544350e-01	ci right 1.689626e-01	k: 1616	n:10000
KS ci ratio: 2.580770e-02	ci left: 6.884913e-01	ci right 7.065935e-01	k: 6976	n:10000
USP9Y   10000 perm   2 sec   (4231 perm/sec)   p_kst 6.976000e-01   p_cons 1.616000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000188/USP9Y.3_7844_10000_0.6976_0.1616_1.png
                gene_name: USP9Y
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 57 percent done.
UTP14C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.380421e-01	ci left: 2.325212e-02	ci right 2.962780e-02	k: 263	n:10000
Cons ci ratio: 1.435501e-02	ci left: 8.753109e-01	ci right 8.880658e-01	k: 8818	n:10000
KS ci ratio: 4.668639e-01	ci left: 5.372463e-03	ci right 8.724383e-03	k: 69	n:10000
UTP14C   10000 perm   2 sec   (6406 perm/sec)   p_kst 6.900000e-03   p_cons 8.818000e-01   p_joint 2.630000e-02

Joint ci ratio: 1.611044e-01	ci left: 2.642978e-02	ci right 3.110856e-02	k: 574	n:20000
Cons ci ratio: 1.006651e-02	ci left: 8.789729e-01	ci right 8.879153e-01	k: 17670	n:20000
KS ci ratio: 3.188563e-01	ci left: 6.305286e-03	ci right 8.741182e-03	k: 149	n:20000
UTP14C   20000 perm   4 sec   (5645 perm/sec)   p_kst 7.450000e-03   p_cons 8.835000e-01   p_joint 2.870000e-02

Joint ci ratio: 9.351148e-02	ci left: 5.274009e-02	ci right 5.794645e-02	k: 1659	n:30000
Cons ci ratio: 7.700270e-03	ci left: 8.927612e-01	ci right 8.996952e-01	k: 26888	n:30000
KS ci ratio: 2.454029e-01	ci left: 7.398410e-03	ci right 9.498454e-03	k: 252	n:30000
UTP14C   30000 perm   6 sec   (5369 perm/sec)   p_kst 8.400000e-03   p_cons 8.962667e-01   p_joint 5.530000e-02

Joint ci ratio: 9.633291e-02	ci left: 3.783195e-02	ci right 4.168523e-02	k: 1589	n:40000
Cons ci ratio: 6.676242e-03	ci left: 8.930178e-01	ci right 8.990245e-01	k: 35842	n:40000
KS ci ratio: 2.107481e-01	ci left: 7.671049e-03	ci right 9.501366e-03	k: 342	n:40000
UTP14C   40000 perm   8 sec   (5184 perm/sec)   p_kst 8.550000e-03   p_cons 8.960500e-01   p_joint 3.972500e-02

Joint ci ratio: 7.779992e-02	ci left: 4.643701e-02	ci right 5.021565e-02	k: 2415	n:50000
Cons ci ratio: 5.984462e-03	ci left: 8.929272e-01	ci right 8.983067e-01	k: 44782	n:50000
KS ci ratio: 1.843692e-01	ci left: 8.133555e-03	ci right 9.804203e-03	k: 447	n:50000
UTP14C   50000 perm   10 sec   (5042 perm/sec)   p_kst 8.940000e-03   p_cons 8.956400e-01   p_joint 4.830000e-02

Joint ci ratio: 7.574260e-02	ci left: 4.111244e-02	ci right 4.436531e-02	k: 2563	n:60000
Cons ci ratio: 5.460264e-03	ci left: 8.932605e-01	ci right 8.981678e-01	k: 53744	n:60000
KS ci ratio: 1.679277e-01	ci left: 8.243851e-03	ci right 9.770876e-03	k: 539	n:60000
UTP14C   60000 perm   12 sec   (4925 perm/sec)   p_kst 8.983333e-03   p_cons 8.957333e-01   p_joint 4.271667e-02

Joint ci ratio: 7.274635e-02	ci left: 3.837782e-02	ci right 4.128905e-02	k: 2787	n:70000
Cons ci ratio: 5.034031e-03	ci left: 8.942343e-01	ci right 8.987614e-01	k: 62756	n:70000
KS ci ratio: 1.572437e-01	ci left: 8.107685e-03	ci right 9.504917e-03	k: 615	n:70000
UTP14C   70000 perm   15 sec   (4818 perm/sec)   p_kst 8.785714e-03   p_cons 8.965143e-01   p_joint 3.981429e-02

Joint ci ratio: 6.154494e-02	ci left: 4.677520e-02	ci right 4.975767e-02	k: 3860	n:80000
Cons ci ratio: 4.725403e-03	ci left: 8.937253e-01	ci right 8.979709e-01	k: 71669	n:80000
KS ci ratio: 1.455320e-01	ci left: 8.333079e-03	ci right 9.652898e-03	k: 718	n:80000
UTP14C   80000 perm   17 sec   (4717 perm/sec)   p_kst 8.975000e-03   p_cons 8.958625e-01   p_joint 4.825000e-02

Joint ci ratio: 6.333793e-02	ci left: 3.952776e-02	ci right 4.212416e-02	k: 3673	n:90000
Cons ci ratio: 4.453444e-03	ci left: 8.939201e-01	ci right 8.979210e-01	k: 80634	n:90000
KS ci ratio: 1.380619e-01	ci left: 8.264528e-03	ci right 9.500772e-03	k: 798	n:90000
UTP14C   90000 perm   19 sec   (4623 perm/sec)   p_kst 8.866667e-03   p_cons 8.959333e-01   p_joint 4.081111e-02

Joint ci ratio: 5.402754e-02	ci left: 4.865726e-02	ci right 5.136892e-02	k: 5000	n:100000
Cons ci ratio: 4.217491e-03	ci left: 8.943536e-01	ci right 8.981434e-01	k: 89626	n:100000
KS ci ratio: 1.308120e-01	ci left: 8.317498e-03	ci right 9.491253e-03	k: 889	n:100000
UTP14C   100000 perm   22 sec   (4532 perm/sec)   p_kst 8.890000e-03   p_cons 8.962600e-01   p_joint 5.000000e-02

Joint ci ratio: 5.682750e-02	ci left: 4.028411e-02	ci right 4.264924e-02	k: 4560	n:110000
Cons ci ratio: 4.014445e-03	ci left: 8.947582e-01	ci right 8.983663e-01	k: 98623	n:110000
KS ci ratio: 1.247244e-01	ci left: 8.344607e-03	ci right 9.463335e-03	k: 978	n:110000
UTP14C   110000 perm   25 sec   (4451 perm/sec)   p_kst 8.890909e-03   p_cons 8.965727e-01   p_joint 4.145455e-02

Joint ci ratio: 6.012700e-02	ci left: 3.317882e-02	ci right 3.524377e-02	k: 4104	n:120000
Cons ci ratio: 3.836572e-03	ci left: 8.951741e-01	ci right 8.986233e-01	k: 107629	n:120000
KS ci ratio: 1.189101e-01	ci left: 8.441037e-03	ci right 9.516227e-03	k: 1076	n:120000
UTP14C   120000 perm   27 sec   (4370 perm/sec)   p_kst 8.966667e-03   p_cons 8.969083e-01   p_joint 3.420000e-02

Joint ci ratio: 6.033039e-02	ci left: 3.050409e-02	ci right 3.240920e-02	k: 4088	n:130000
Cons ci ratio: 3.687138e-03	ci left: 8.951878e-01	ci right 8.985022e-01	k: 116591	n:130000
KS ci ratio: 1.137421e-01	ci left: 8.538604e-03	ci right 9.575780e-03	k: 1176	n:130000
UTP14C   130000 perm   30 sec   (4298 perm/sec)   p_kst 9.046154e-03   p_cons 8.968538e-01   p_joint 3.144615e-02

Joint ci ratio: 5.393113e-02	ci left: 3.538271e-02	ci right 3.735084e-02	k: 5090	n:140000
Cons ci ratio: 3.552398e-03	ci left: 8.952809e-01	ci right 8.984740e-01	k: 125564	n:140000
KS ci ratio: 1.094105e-01	ci left: 8.588353e-03	ci right 9.589281e-03	k: 1271	n:140000
UTP14C   140000 perm   33 sec   (4224 perm/sec)   p_kst 9.078571e-03   p_cons 8.968857e-01   p_joint 3.635714e-02

Joint ci ratio: 5.154431e-02	ci left: 3.616889e-02	ci right 3.808906e-02	k: 5568	n:150000
Cons ci ratio: 3.431673e-03	ci left: 8.953501e-01	ci right 8.984345e-01	k: 134535	n:150000
KS ci ratio: 1.058519e-01	ci left: 8.580181e-03	ci right 9.545605e-03	k: 1358	n:150000
UTP14C   150000 perm   36 sec   (4157 perm/sec)   p_kst 9.053333e-03   p_cons 8.969000e-01   p_joint 3.712000e-02

Joint ci ratio: 4.646935e-02	ci left: 4.159089e-02	ci right 4.357572e-02	k: 6812	n:160000
Cons ci ratio: 3.320453e-03	ci left: 8.955255e-01	ci right 8.985101e-01	k: 143524	n:160000
KS ci ratio: 1.022986e-01	ci left: 8.628314e-03	ci right 9.564604e-03	k: 1454	n:160000
UTP14C   160000 perm   39 sec   (4093 perm/sec)   p_kst 9.087500e-03   p_cons 8.970250e-01   p_joint 4.257500e-02

Joint ci ratio: 4.437524e-02	ci left: 4.291350e-02	ci right 4.486680e-02	k: 7460	n:170000
Cons ci ratio: 3.222873e-03	ci left: 8.954803e-01	ci right 8.983768e-01	k: 152479	n:170000
KS ci ratio: 9.960038e-02	ci left: 8.579462e-03	ci right 9.484459e-03	k: 1534	n:170000
UTP14C   170000 perm   42 sec   (4031 perm/sec)   p_kst 9.023529e-03   p_cons 8.969353e-01   p_joint 4.388235e-02

Outputting figure to mutsig2_images.part000000000188/UTP14C.3_2305_170000_0.0090235_0.89694_0.043882.png
                gene_name: UTP14C
               theta_stop: 0.100 
                    nperm: 170000 
                     p_ks: 0.0090 
        ci_ks_bounds_left: 0.0086 
       ci_ks_bounds_right: 0.0095 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.044 
     ci_joint_bounds_left: 0.043 
    ci_joint_bounds_right: 0.045 

Current progress: 59 percent done.
UTP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.067940e-02	ci left: 6.105032e-01	ci right 6.296268e-01	k: 6201	n:10000
KS ci ratio: 1.907267e-02	ci left: 8.007500e-01	ci right 8.162698e-01	k: 8086	n:10000
UTP3   10000 perm   2 sec   (6498 perm/sec)   p_kst 8.086000e-01   p_cons 6.201000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000188/UTP3.3_1444_10000_0.8086_0.6201_1.png
                gene_name: UTP3
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 61 percent done.
VAMP7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.944208e-02	ci left: 1.879635e-01	ci right 2.036141e-01	k: 1957	n:10000
Cons ci ratio: 7.769459e-02	ci left: 1.949567e-01	ci right 2.108168e-01	k: 2028	n:10000
KS ci ratio: 1.110452e-01	ci left: 1.046144e-01	ci right 1.170133e-01	k: 1107	n:10000
VAMP7   10000 perm   2 sec   (6497 perm/sec)   p_kst 1.107000e-01   p_cons 2.028000e-01   p_joint 1.957000e-01

Joint ci ratio: 5.909097e-02	ci left: 1.749938e-01	ci right 1.856993e-01	k: 3606	n:20000
Cons ci ratio: 5.424393e-02	ci left: 2.014028e-01	ci right 2.126825e-01	k: 4140	n:20000
KS ci ratio: 7.920726e-02	ci left: 1.047622e-01	ci right 1.134519e-01	k: 2181	n:20000
VAMP7   20000 perm   3 sec   (5785 perm/sec)   p_kst 1.090500e-01   p_cons 2.070000e-01   p_joint 1.803000e-01

Outputting figure to mutsig2_images.part000000000188/VAMP7.3_879_20000_0.10905_0.207_0.1803.png
                gene_name: VAMP7
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.19 

Current progress: 63 percent done.
VEZF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.261065e-02	ci left: 4.484977e-01	ci right 4.681266e-01	k: 4583	n:10000
KS ci ratio: 2.519152e-02	ci left: 6.986761e-01	ci right 7.166028e-01	k: 7077	n:10000
VEZF1   10000 perm   2 sec   (6180 perm/sec)   p_kst 7.077000e-01   p_cons 4.583000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000188/VEZF1.3_1590_10000_0.7077_0.4583_1.png
                gene_name: VEZF1
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
USP48
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.471734e-02	ci left: 8.698917e-01	ci right 8.828882e-01	k: 8765	n:10000
Cons ci ratio: 2.340422e-02	ci left: 7.284549e-01	ci right 7.458068e-01	k: 7372	n:10000
KS ci ratio: 2.425064e-02	ci left: 7.143166e-01	ci right 7.319532e-01	k: 7232	n:10000
USP48   10000 perm   2 sec   (6038 perm/sec)   p_kst 7.232000e-01   p_cons 7.372000e-01   p_joint 8.765000e-01

Outputting figure to mutsig2_images.part000000000188/USP48.2_3224_10000_0.7232_0.7372_0.8765.png
                gene_name: USP48
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 67 percent done.
USP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.034263e-01	ci left: 1.190667e-01	ci right 1.321523e-01	k: 1255	n:10000
KS ci ratio: 3.376626e-02	ci left: 5.642377e-01	ci right 5.837192e-01	k: 5740	n:10000
USP5   10000 perm   2 sec   (5951 perm/sec)   p_kst 5.740000e-01   p_cons 1.255000e-01   p_joint 1

Joint ci ratio: 3.815486e-03	ci left: 9.794835e-01	ci right 9.832748e-01	k: 19629	n:20000
Cons ci ratio: 7.278719e-02	ci left: 1.220210e-01	ci right 1.312878e-01	k: 2532	n:20000
KS ci ratio: 2.421140e-02	ci left: 5.602990e-01	ci right 5.740815e-01	k: 11344	n:20000
USP5   20000 perm   4 sec   (5332 perm/sec)   p_kst 5.672000e-01   p_cons 1.266000e-01   p_joint 9.814500e-01

Outputting figure to mutsig2_images.part000000000188/USP5.2_2657_20000_0.5672_0.1266_0.98145.png
                gene_name: USP5
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 70 percent done.
USP50
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.713222e-02	ci left: 5.171578e-01	ci right 5.368265e-01	k: 5270	n:10000
KS ci ratio: 2.770196e-02	ci left: 6.575647e-01	ci right 6.761380e-01	k: 6669	n:10000
USP50   10000 perm   1 sec   (6864 perm/sec)   p_kst 6.669000e-01   p_cons 5.270000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000188/USP50.2_1033_10000_0.6669_0.527_1.png
                gene_name: USP50
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
USP51
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.863244e-03	ci left: 9.574375e-01	ci right 9.650907e-01	k: 9614	n:10000
Cons ci ratio: 2.512457e-02	ci left: 6.997857e-01	ci right 7.176926e-01	k: 7088	n:10000
KS ci ratio: 2.211887e-02	ci left: 7.499869e-01	ci right 7.668623e-01	k: 7585	n:10000
USP51   10000 perm   2 sec   (6515 perm/sec)   p_kst 7.585000e-01   p_cons 7.088000e-01   p_joint 9.614000e-01

Outputting figure to mutsig2_images.part000000000188/USP51.2_2140_10000_0.7585_0.7088_0.9614.png
                gene_name: USP51
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 74 percent done.
USPL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.578567e-02	ci left: 8.535544e-01	ci right 8.672349e-01	k: 8605	n:10000
Cons ci ratio: 5.350728e-03	ci left: 9.789852e-01	ci right 9.843289e-01	k: 9818	n:10000
KS ci ratio: 8.931779e-02	ci left: 1.542387e-01	ci right 1.687591e-01	k: 1614	n:10000
USPL1   10000 perm   2 sec   (5832 perm/sec)   p_kst 1.614000e-01   p_cons 9.818000e-01   p_joint 8.605000e-01

Outputting figure to mutsig2_images.part000000000188/USPL1.2_3311_10000_0.1614_0.9818_0.8605.png
                gene_name: USPL1
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 76 percent done.
UTP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.315918e-01	ci left: 7.611299e-02	ci right 8.693227e-02	k: 814	n:10000
Cons ci ratio: 1.372648e-01	ci left: 7.020239e-02	ci right 8.064655e-02	k: 753	n:10000
KS ci ratio: 1.660239e-01	ci left: 4.840157e-02	ci right 5.726121e-02	k: 527	n:10000
UTP6   10000 perm   2 sec   (6430 perm/sec)   p_kst 5.270000e-02   p_cons 7.530000e-02   p_joint 8.140000e-02

Joint ci ratio: 1.890231e-01	ci left: 1.905770e-02	ci right 2.308322e-02	k: 420	n:20000
Cons ci ratio: 9.603360e-02	ci left: 7.319530e-02	ci right 8.062826e-02	k: 1537	n:20000
KS ci ratio: 1.179307e-01	ci left: 4.925481e-02	ci right 5.547615e-02	k: 1046	n:20000
UTP6   20000 perm   4 sec   (5685 perm/sec)   p_kst 5.230000e-02   p_cons 7.685000e-02   p_joint 2.100000e-02

Joint ci ratio: 2.139407e-01	ci left: 9.882165e-03	ci right 1.228060e-02	k: 331	n:30000
Cons ci ratio: 8.655001e-02	ci left: 6.122341e-02	ci right 6.679473e-02	k: 1919	n:30000
KS ci ratio: 9.762634e-02	ci left: 4.850489e-02	ci right 5.351585e-02	k: 1529	n:30000
UTP6   30000 perm   6 sec   (5387 perm/sec)   p_kst 5.096667e-02   p_cons 6.396667e-02   p_joint 1.103333e-02

Joint ci ratio: 1.550650e-01	ci left: 1.450452e-02	ci right 1.696651e-02	k: 628	n:40000
Cons ci ratio: 7.467469e-02	ci left: 6.203824e-02	ci right 6.687522e-02	k: 2577	n:40000
KS ci ratio: 8.588645e-02	ci left: 4.737010e-02	ci right 5.164560e-02	k: 1979	n:40000
UTP6   40000 perm   8 sec   (5193 perm/sec)   p_kst 4.947500e-02   p_cons 6.442500e-02   p_joint 1.570000e-02

Joint ci ratio: 1.289019e-01	ci left: 1.698825e-02	ci right 1.934816e-02	k: 907	n:50000
Cons ci ratio: 6.698584e-02	ci left: 6.194879e-02	ci right 6.626199e-02	k: 3204	n:50000
KS ci ratio: 7.716438e-02	ci left: 4.718299e-02	ci right 5.098958e-02	k: 2453	n:50000
UTP6   50000 perm   10 sec   (5040 perm/sec)   p_kst 4.906000e-02   p_cons 6.408000e-02   p_joint 1.814000e-02

Joint ci ratio: 1.295359e-01	ci left: 1.405871e-02	ci right 1.602194e-02	k: 901	n:60000
Cons ci ratio: 6.098871e-02	ci left: 6.244868e-02	ci right 6.639358e-02	k: 3864	n:60000
KS ci ratio: 7.115301e-02	ci left: 4.643418e-02	ci right 4.987636e-02	k: 2888	n:60000
UTP6   60000 perm   13 sec   (4736 perm/sec)   p_kst 4.813333e-02   p_cons 6.440000e-02   p_joint 1.501667e-02

Joint ci ratio: 1.198885e-01	ci left: 1.414027e-02	ci right 1.595739e-02	k: 1052	n:70000
Cons ci ratio: 5.616677e-02	ci left: 6.322695e-02	ci right 6.689491e-02	k: 4553	n:70000
KS ci ratio: 6.562477e-02	ci left: 4.690615e-02	ci right 5.010283e-02	k: 3394	n:70000
UTP6   70000 perm   15 sec   (4654 perm/sec)   p_kst 4.848571e-02   p_cons 6.504286e-02   p_joint 1.502857e-02

Joint ci ratio: 1.063465e-01	ci left: 1.581115e-02	ci right 1.759914e-02	k: 1335	n:80000
Cons ci ratio: 5.250995e-02	ci left: 6.341236e-02	ci right 6.684426e-02	k: 5209	n:80000
KS ci ratio: 6.146135e-02	ci left: 4.689837e-02	ci right 4.988449e-02	k: 3870	n:80000
UTP6   80000 perm   17 sec   (4574 perm/sec)   p_kst 4.837500e-02   p_cons 6.511250e-02   p_joint 1.668750e-02

Joint ci ratio: 9.485601e-02	ci left: 1.773815e-02	ci right 1.951529e-02	k: 1675	n:90000
Cons ci ratio: 4.954420e-02	ci left: 6.341984e-02	ci right 6.665271e-02	k: 5852	n:90000
KS ci ratio: 5.805061e-02	ci left: 4.682064e-02	ci right 4.963079e-02	k: 4339	n:90000
UTP6   90000 perm   20 sec   (4485 perm/sec)   p_kst 4.821111e-02   p_cons 6.502222e-02   p_joint 1.861111e-02

Outputting figure to mutsig2_images.part000000000188/UTP6.2_1870_90000_0.048211_0.065022_0.018611.png
                gene_name: UTP6
               theta_stop: 0.095 
                    nperm: 90000 
                     p_ks: 0.048 
        ci_ks_bounds_left: 0.047 
       ci_ks_bounds_right: 0.050 
                   p_cons: 0.065 
      ci_cons_bounds_left: 0.063 
     ci_cons_bounds_right: 0.067 
                  p_joint: 0.019 
     ci_joint_bounds_left: 0.018 
    ci_joint_bounds_right: 0.020 

Current progress: 78 percent done.
UVRAG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.029653e-02	ci left: 6.164309e-01	ci right 6.354957e-01	k: 6260	n:10000
Cons ci ratio: 1.266640e-01	ci left: 8.183830e-02	ci right 9.300341e-02	k: 873	n:10000
KS ci ratio: 2.807057e-02	ci left: 6.516263e-01	ci right 6.702799e-01	k: 6610	n:10000
UVRAG   10000 perm   2 sec   (5433 perm/sec)   p_kst 6.610000e-01   p_cons 8.730000e-02   p_joint 6.260000e-01

Joint ci ratio: 2.517477e-02	ci left: 5.410209e-01	ci right 5.548652e-01	k: 10959	n:20000
Cons ci ratio: 8.846213e-02	ci left: 8.543163e-02	ci right 9.338821e-02	k: 1787	n:20000
KS ci ratio: 1.975674e-02	ci left: 6.565012e-01	ci right 6.696514e-01	k: 13262	n:20000
UVRAG   20000 perm   4 sec   (5211 perm/sec)   p_kst 6.631000e-01   p_cons 8.935000e-02   p_joint 5.479500e-01

Outputting figure to mutsig2_images.part000000000188/UVRAG.2_2160_20000_0.6631_0.08935_0.54795.png
                gene_name: UVRAG
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.089 
      ci_cons_bounds_left: 0.085 
     ci_cons_bounds_right: 0.093 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.55 

Current progress: 80 percent done.
VANGL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.245605e-03	ci left: 9.862119e-01	ci right 9.904965e-01	k: 9885	n:10000
KS ci ratio: 3.713756e-03	ci left: 9.891692e-01	ci right 9.929363e-01	k: 9912	n:10000
VANGL2   10000 perm   2 sec   (6577 perm/sec)   p_kst 9.912000e-01   p_cons 9.885000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000188/VANGL2.2_1594_10000_0.9912_0.9885_1.png
                gene_name: VANGL2
               theta_stop: 0.0042 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
VAPB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.296871e-02	ci left: 8.953894e-01	ci right 9.071756e-01	k: 9014	n:10000
Cons ci ratio: 8.412142e-02	ci left: 1.708424e-01	ci right 1.859454e-01	k: 1783	n:10000
KS ci ratio: 1.886917e-02	ci left: 8.041002e-01	ci right 8.195177e-01	k: 8119	n:10000
VAPB   10000 perm   1 sec   (7081 perm/sec)   p_kst 8.119000e-01   p_cons 1.783000e-01   p_joint 9.014000e-01

Outputting figure to mutsig2_images.part000000000188/VAPB.2_756_10000_0.8119_0.1783_0.9014.png
                gene_name: VAPB
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 85 percent done.
VASP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.714031e-01	ci left: 4.542628e-02	ci right 5.403844e-02	k: 496	n:10000
Cons ci ratio: 7.936649e-02	ci left: 1.882589e-01	ci right 2.039185e-01	k: 1960	n:10000
KS ci ratio: 2.473410e-01	ci left: 2.146516e-02	ci right 2.761609e-02	k: 244	n:10000
VASP   10000 perm   1 sec   (7005 perm/sec)   p_kst 2.440000e-02   p_cons 1.960000e-01   p_joint 4.960000e-02

Joint ci ratio: 1.142902e-01	ci left: 5.236672e-02	ci right 5.876326e-02	k: 1110	n:20000
Cons ci ratio: 5.638072e-02	ci left: 1.891330e-01	ci right 2.001559e-01	k: 3892	n:20000
KS ci ratio: 1.763823e-01	ci left: 2.197114e-02	ci right 2.626874e-02	k: 481	n:20000
VASP   20000 perm   3 sec   (6140 perm/sec)   p_kst 2.405000e-02   p_cons 1.946000e-01   p_joint 5.550000e-02

Joint ci ratio: 1.005700e-01	ci left: 4.577092e-02	ci right 5.065039e-02	k: 1445	n:30000
Cons ci ratio: 4.597377e-02	ci left: 1.905627e-01	ci right 1.995631e-01	k: 5851	n:30000
KS ci ratio: 1.426081e-01	ci left: 2.281229e-02	ci right 2.634727e-02	k: 736	n:30000
VASP   30000 perm   5 sec   (5825 perm/sec)   p_kst 2.453333e-02   p_cons 1.950333e-01   p_joint 4.816667e-02

Joint ci ratio: 1.066423e-01	ci left: 3.092988e-02	ci right 3.443839e-02	k: 1306	n:40000
Cons ci ratio: 3.979448e-02	ci left: 1.913255e-01	ci right 1.991188e-01	k: 7808	n:40000
KS ci ratio: 1.241955e-01	ci left: 2.278890e-02	ci right 2.583069e-02	k: 971	n:40000
VASP   40000 perm   7 sec   (5627 perm/sec)   p_kst 2.427500e-02   p_cons 1.952000e-01   p_joint 3.265000e-02

Joint ci ratio: 9.558830e-02	ci left: 3.098244e-02	ci right 3.411214e-02	k: 1626	n:50000
Cons ci ratio: 3.563471e-02	ci left: 1.913761e-01	ci right 1.983394e-01	k: 9742	n:50000
KS ci ratio: 1.117934e-01	ci left: 2.265673e-02	ci right 2.535892e-02	k: 1199	n:50000
VASP   50000 perm   9 sec   (5455 perm/sec)   p_kst 2.398000e-02   p_cons 1.948400e-01   p_joint 3.252000e-02

Joint ci ratio: 8.773481e-02	ci left: 3.078550e-02	ci right 3.362665e-02	k: 1931	n:60000
Cons ci ratio: 3.241392e-02	ci left: 1.927969e-01	ci right 1.991658e-01	k: 11758	n:60000
KS ci ratio: 1.023082e-01	ci left: 2.266010e-02	ci right 2.511958e-02	k: 1432	n:60000
VASP   60000 perm   11 sec   (5309 perm/sec)   p_kst 2.386667e-02   p_cons 1.959667e-01   p_joint 3.218333e-02

Joint ci ratio: 8.175289e-02	ci left: 3.049843e-02	ci right 3.311199e-02	k: 2225	n:70000
Cons ci ratio: 3.007060e-02	ci left: 1.923972e-01	ci right 1.982852e-01	k: 13673	n:70000
KS ci ratio: 9.488881e-02	ci left: 2.266951e-02	ci right 2.494163e-02	k: 1665	n:70000
VASP   70000 perm   14 sec   (5184 perm/sec)   p_kst 2.378571e-02   p_cons 1.953286e-01   p_joint 3.178571e-02

Outputting figure to mutsig2_images.part000000000188/VASP.2_1195_70000_0.023786_0.19533_0.031786.png
                gene_name: VASP
               theta_stop: 0.095 
                    nperm: 70000 
                     p_ks: 0.024 
        ci_ks_bounds_left: 0.023 
       ci_ks_bounds_right: 0.025 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.032 
     ci_joint_bounds_left: 0.030 
    ci_joint_bounds_right: 0.033 

Current progress: 87 percent done.
VBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.185349e-01	ci left: 2.774707e-03	ci right 5.327611e-03	k: 39	n:10000
Cons ci ratio: 1.012706e-01	ci left: 1.236626e-01	ci right 1.369535e-01	k: 1302	n:10000
KS ci ratio: 6.185349e-01	ci left: 2.774707e-03	ci right 5.327611e-03	k: 39	n:10000
VBP1   10000 perm   1 sec   (7118 perm/sec)   p_kst 3.900000e-03   p_cons 1.302000e-01   p_joint 3.900000e-03

Joint ci ratio: 4.487885e-01	ci left: 2.950721e-03	ci right 4.698422e-03	k: 75	n:20000
Cons ci ratio: 7.137438e-02	ci left: 1.263528e-01	ci right 1.357547e-01	k: 2620	n:20000
KS ci ratio: 4.487885e-01	ci left: 2.950721e-03	ci right 4.698422e-03	k: 75	n:20000
VBP1   20000 perm   3 sec   (6199 perm/sec)   p_kst 3.750000e-03   p_cons 1.310000e-01   p_joint 3.750000e-03

Joint ci ratio: 3.586265e-01	ci left: 3.256774e-03	ci right 4.708553e-03	k: 118	n:30000
Cons ci ratio: 5.769185e-02	ci left: 1.295057e-01	ci right 1.372322e-01	k: 4000	n:30000
KS ci ratio: 3.586265e-01	ci left: 3.256774e-03	ci right 4.708553e-03	k: 118	n:30000
VBP1   30000 perm   5 sec   (5887 perm/sec)   p_kst 3.933333e-03   p_cons 1.333333e-01   p_joint 3.933333e-03

Joint ci ratio: 3.036153e-01	ci left: 3.520621e-03	ci right 4.803011e-03	k: 165	n:40000
Cons ci ratio: 4.968193e-02	ci left: 1.313189e-01	ci right 1.380342e-01	k: 5386	n:40000
KS ci ratio: 3.036153e-01	ci left: 3.520621e-03	ci right 4.803011e-03	k: 165	n:40000
VBP1   40000 perm   7 sec   (5671 perm/sec)   p_kst 4.125000e-03   p_cons 1.346500e-01   p_joint 4.125000e-03

Joint ci ratio: 2.590132e-01	ci left: 3.969664e-03	ci right 5.168974e-03	k: 227	n:50000
Cons ci ratio: 4.423503e-02	ci left: 1.327292e-01	ci right 1.387532e-01	k: 6786	n:50000
KS ci ratio: 2.590132e-01	ci left: 3.969664e-03	ci right 5.168974e-03	k: 227	n:50000
VBP1   50000 perm   9 sec   (5510 perm/sec)   p_kst 4.540000e-03   p_cons 1.357200e-01   p_joint 4.540000e-03

Joint ci ratio: 2.402693e-01	ci left: 3.886166e-03	ci right 4.962636e-03	k: 264	n:60000
Cons ci ratio: 4.031051e-02	ci left: 1.333987e-01	ci right 1.389032e-01	k: 8168	n:60000
KS ci ratio: 2.402693e-01	ci left: 3.886166e-03	ci right 4.962636e-03	k: 264	n:60000
VBP1   60000 perm   11 sec   (5376 perm/sec)   p_kst 4.400000e-03   p_cons 1.361333e-01   p_joint 4.400000e-03

Joint ci ratio: 2.217869e-01	ci left: 3.950176e-03	ci right 4.948730e-03	k: 310	n:70000
Cons ci ratio: 3.724683e-02	ci left: 1.340639e-01	ci right 1.391663e-01	k: 9562	n:70000
KS ci ratio: 2.217869e-01	ci left: 3.950176e-03	ci right 4.948730e-03	k: 310	n:70000
VBP1   70000 perm   13 sec   (5256 perm/sec)   p_kst 4.428571e-03   p_cons 1.366000e-01   p_joint 4.428571e-03

Joint ci ratio: 2.061355e-01	ci left: 4.036139e-03	ci right 4.975352e-03	k: 359	n:80000
Cons ci ratio: 3.478990e-02	ci left: 1.345746e-01	ci right 1.393517e-01	k: 10956	n:80000
KS ci ratio: 2.061355e-01	ci left: 4.036139e-03	ci right 4.975352e-03	k: 359	n:80000
VBP1   80000 perm   16 sec   (5136 perm/sec)   p_kst 4.487500e-03   p_cons 1.369500e-01   p_joint 4.487500e-03

Joint ci ratio: 1.963037e-01	ci left: 3.978073e-03	ci right 4.854342e-03	k: 396	n:90000
Cons ci ratio: 3.286767e-02	ci left: 1.342301e-01	ci right 1.387267e-01	k: 12282	n:90000
KS ci ratio: 1.963037e-01	ci left: 3.978073e-03	ci right 4.854342e-03	k: 396	n:90000
VBP1   90000 perm   18 sec   (5025 perm/sec)   p_kst 4.400000e-03   p_cons 1.364667e-01   p_joint 4.400000e-03

Joint ci ratio: 1.858309e-01	ci left: 4.018282e-03	ci right 4.850864e-03	k: 442	n:100000
Cons ci ratio: 3.124838e-02	ci left: 1.338413e-01	ci right 1.380999e-01	k: 13596	n:100000
KS ci ratio: 1.858309e-01	ci left: 4.018282e-03	ci right 4.850864e-03	k: 442	n:100000
VBP1   100000 perm   20 sec   (4921 perm/sec)   p_kst 4.420000e-03   p_cons 1.359600e-01   p_joint 4.420000e-03

Joint ci ratio: 1.779733e-01	ci left: 4.000064e-03	ci right 4.790054e-03	k: 482	n:110000
Cons ci ratio: 2.978115e-02	ci left: 1.340426e-01	ci right 1.381039e-01	k: 14967	n:110000
KS ci ratio: 1.779733e-01	ci left: 4.000064e-03	ci right 4.790054e-03	k: 482	n:110000
VBP1   110000 perm   23 sec   (4825 perm/sec)   p_kst 4.381818e-03   p_cons 1.360636e-01   p_joint 4.381818e-03

Joint ci ratio: 1.720289e-01	ci left: 3.937639e-03	ci right 4.686628e-03	k: 516	n:120000
Cons ci ratio: 2.852009e-02	ci left: 1.340735e-01	ci right 1.379608e-01	k: 16321	n:120000
KS ci ratio: 1.720289e-01	ci left: 3.937639e-03	ci right 4.686628e-03	k: 516	n:120000
VBP1   120000 perm   25 sec   (4723 perm/sec)   p_kst 4.300000e-03   p_cons 1.360083e-01   p_joint 4.300000e-03

Joint ci ratio: 1.644102e-01	ci left: 3.995813e-03	ci right 4.718878e-03	k: 565	n:130000
Cons ci ratio: 2.745441e-02	ci left: 1.336973e-01	ci right 1.374266e-01	k: 17622	n:130000
KS ci ratio: 1.644102e-01	ci left: 3.995813e-03	ci right 4.718878e-03	k: 565	n:130000
VBP1   130000 perm   28 sec   (4634 perm/sec)   p_kst 4.346154e-03   p_cons 1.355538e-01   p_joint 4.346154e-03

Joint ci ratio: 1.575929e-01	ci left: 4.053165e-03	ci right 4.753320e-03	k: 615	n:140000
Cons ci ratio: 2.649662e-02	ci left: 1.334058e-01	ci right 1.369951e-01	k: 18927	n:140000
KS ci ratio: 1.575929e-01	ci left: 4.053165e-03	ci right 4.753320e-03	k: 615	n:140000
VBP1   140000 perm   31 sec   (4546 perm/sec)   p_kst 4.392857e-03   p_cons 1.351929e-01   p_joint 4.392857e-03

Joint ci ratio: 1.531845e-01	ci left: 4.013616e-03	ci right 4.685764e-03	k: 651	n:150000
Cons ci ratio: 2.559744e-02	ci left: 1.334733e-01	ci right 1.369408e-01	k: 20280	n:150000
KS ci ratio: 1.531845e-01	ci left: 4.013616e-03	ci right 4.685764e-03	k: 651	n:150000
VBP1   150000 perm   34 sec   (4469 perm/sec)   p_kst 4.340000e-03   p_cons 1.352000e-01   p_joint 4.340000e-03

Joint ci ratio: 1.485852e-01	ci left: 4.009341e-03	ci right 4.658822e-03	k: 692	n:160000
Cons ci ratio: 2.477341e-02	ci left: 1.336337e-01	ci right 1.369920e-01	k: 21649	n:160000
KS ci ratio: 1.485852e-01	ci left: 4.009341e-03	ci right 4.658822e-03	k: 692	n:160000
VBP1   160000 perm   37 sec   (4374 perm/sec)   p_kst 4.325000e-03   p_cons 1.353062e-01   p_joint 4.325000e-03

Joint ci ratio: 1.440813e-01	ci left: 4.022847e-03	ci right 4.653064e-03	k: 736	n:170000
Cons ci ratio: 2.400787e-02	ci left: 1.339349e-01	ci right 1.371952e-01	k: 23045	n:170000
KS ci ratio: 1.440813e-01	ci left: 4.022847e-03	ci right 4.653064e-03	k: 736	n:170000
VBP1   170000 perm   40 sec   (4302 perm/sec)   p_kst 4.329412e-03   p_cons 1.355588e-01   p_joint 4.329412e-03

Joint ci ratio: 1.395158e-01	ci left: 4.061927e-03	ci right 4.676426e-03	k: 785	n:180000
Cons ci ratio: 2.335341e-02	ci left: 1.337617e-01	ci right 1.369279e-01	k: 24361	n:180000
KS ci ratio: 1.395158e-01	ci left: 4.061927e-03	ci right 4.676426e-03	k: 785	n:180000
VBP1   180000 perm   43 sec   (4230 perm/sec)   p_kst 4.361111e-03   p_cons 1.353389e-01   p_joint 4.361111e-03

Joint ci ratio: 1.353584e-01	ci left: 4.097175e-03	ci right 4.697049e-03	k: 834	n:190000
Cons ci ratio: 2.274714e-02	ci left: 1.336340e-01	ci right 1.367140e-01	k: 25682	n:190000
KS ci ratio: 1.353584e-01	ci left: 4.097175e-03	ci right 4.697049e-03	k: 834	n:190000
VBP1   190000 perm   46 sec   (4165 perm/sec)   p_kst 4.389474e-03   p_cons 1.351684e-01   p_joint 4.389474e-03

Joint ci ratio: 1.320026e-01	ci left: 4.100126e-03	ci right 4.684382e-03	k: 877	n:200000
Cons ci ratio: 2.214217e-02	ci left: 1.339779e-01	ci right 1.369826e-01	k: 27095	n:200000
KS ci ratio: 1.320026e-01	ci left: 4.100126e-03	ci right 4.684382e-03	k: 877	n:200000
VBP1   200000 perm   49 sec   (4100 perm/sec)   p_kst 4.385000e-03   p_cons 1.354750e-01   p_joint 4.385000e-03

Joint ci ratio: 1.279117e-01	ci left: 4.167497e-03	ci right 4.741552e-03	k: 934	n:210000
Cons ci ratio: 2.160846e-02	ci left: 1.340151e-01	ci right 1.369473e-01	k: 28450	n:210000
KS ci ratio: 1.279117e-01	ci left: 4.167497e-03	ci right 4.741552e-03	k: 934	n:210000
VBP1   210000 perm   52 sec   (4038 perm/sec)   p_kst 4.447619e-03   p_cons 1.354762e-01   p_joint 4.447619e-03

Joint ci ratio: 1.248763e-01	ci left: 4.180547e-03	ci right 4.741723e-03	k: 980	n:220000
Cons ci ratio: 2.111772e-02	ci left: 1.339819e-01	ci right 1.368459e-01	k: 29790	n:220000
KS ci ratio: 1.248763e-01	ci left: 4.180547e-03	ci right 4.741723e-03	k: 980	n:220000
VBP1   220000 perm   55 sec   (3977 perm/sec)   p_kst 4.454545e-03   p_cons 1.354091e-01   p_joint 4.454545e-03

Joint ci ratio: 1.225880e-01	ci left: 4.154671e-03	ci right 4.701412e-03	k: 1017	n:230000
Cons ci ratio: 2.064286e-02	ci left: 1.341340e-01	ci right 1.369361e-01	k: 31172	n:230000
KS ci ratio: 1.225880e-01	ci left: 4.154671e-03	ci right 4.701412e-03	k: 1017	n:230000
VBP1   230000 perm   59 sec   (3919 perm/sec)   p_kst 4.421739e-03   p_cons 1.355304e-01   p_joint 4.421739e-03

Joint ci ratio: 1.205358e-01	ci left: 4.122954e-03	ci right 4.655791e-03	k: 1052	n:240000
Cons ci ratio: 2.018646e-02	ci left: 1.344152e-01	ci right 1.371603e-01	k: 32588	n:240000
KS ci ratio: 1.205358e-01	ci left: 4.122954e-03	ci right 4.655791e-03	k: 1052	n:240000
VBP1   240000 perm   62 sec   (3861 perm/sec)   p_kst 4.383333e-03   p_cons 1.357833e-01   p_joint 4.383333e-03

Joint ci ratio: 1.183106e-01	ci left: 4.113255e-03	ci right 4.634338e-03	k: 1092	n:250000
Cons ci ratio: 1.977520e-02	ci left: 1.344833e-01	ci right 1.371732e-01	k: 33956	n:250000
KS ci ratio: 1.183106e-01	ci left: 4.113255e-03	ci right 4.634338e-03	k: 1092	n:250000
VBP1   250000 perm   66 sec   (3806 perm/sec)   p_kst 4.368000e-03   p_cons 1.358240e-01   p_joint 4.368000e-03

Joint ci ratio: 1.157944e-01	ci left: 4.134266e-03	ci right 4.646110e-03	k: 1140	n:260000
Cons ci ratio: 1.939381e-02	ci left: 1.344777e-01	ci right 1.371151e-01	k: 35306	n:260000
KS ci ratio: 1.157944e-01	ci left: 4.134266e-03	ci right 4.646110e-03	k: 1140	n:260000
VBP1   260000 perm   69 sec   (3752 perm/sec)   p_kst 4.384615e-03   p_cons 1.357923e-01   p_joint 4.384615e-03

Joint ci ratio: 1.140114e-01	ci left: 4.110643e-03	ci right 4.611199e-03	k: 1176	n:270000
Cons ci ratio: 1.903577e-02	ci left: 1.344472e-01	ci right 1.370347e-01	k: 36649	n:270000
KS ci ratio: 1.140114e-01	ci left: 4.110643e-03	ci right 4.611199e-03	k: 1176	n:270000
VBP1   270000 perm   73 sec   (3700 perm/sec)   p_kst 4.355556e-03   p_cons 1.357370e-01   p_joint 4.355556e-03

Joint ci ratio: 1.119843e-01	ci left: 4.113066e-03	ci right 4.604423e-03	k: 1219	n:280000
Cons ci ratio: 1.869487e-02	ci left: 1.344442e-01	ci right 1.369848e-01	k: 37999	n:280000
KS ci ratio: 1.119843e-01	ci left: 4.113066e-03	ci right 4.604423e-03	k: 1219	n:280000
VBP1   280000 perm   77 sec   (3649 perm/sec)   p_kst 4.353571e-03   p_cons 1.357107e-01   p_joint 4.353571e-03

Joint ci ratio: 1.105462e-01	ci left: 4.078505e-03	ci right 4.559069e-03	k: 1251	n:290000
Cons ci ratio: 1.835977e-02	ci left: 1.345929e-01	ci right 1.370903e-01	k: 39393	n:290000
KS ci ratio: 1.105462e-01	ci left: 4.078505e-03	ci right 4.559069e-03	k: 1251	n:290000
VBP1   290000 perm   81 sec   (3600 perm/sec)   p_kst 4.313793e-03   p_cons 1.358379e-01   p_joint 4.313793e-03

Joint ci ratio: 1.081515e-01	ci left: 4.124122e-03	ci right 4.598864e-03	k: 1307	n:300000
Cons ci ratio: 1.806360e-02	ci left: 1.344531e-01	ci right 1.369073e-01	k: 40703	n:300000
KS ci ratio: 1.081515e-01	ci left: 4.124122e-03	ci right 4.598864e-03	k: 1307	n:300000
VBP1   300000 perm   84 sec   (3552 perm/sec)   p_kst 4.356667e-03   p_cons 1.356767e-01   p_joint 4.356667e-03

Joint ci ratio: 1.064562e-01	ci left: 4.122933e-03	ci right 4.589633e-03	k: 1349	n:310000
Cons ci ratio: 1.776127e-02	ci left: 1.345862e-01	ci right 1.370012e-01	k: 42095	n:310000
KS ci ratio: 1.064562e-01	ci left: 4.122933e-03	ci right 4.589633e-03	k: 1349	n:310000
VBP1   310000 perm   88 sec   (3507 perm/sec)   p_kst 4.351613e-03   p_cons 1.357903e-01   p_joint 4.351613e-03

Joint ci ratio: 1.049138e-01	ci left: 4.115787e-03	ci right 4.574511e-03	k: 1389	n:320000
Cons ci ratio: 1.747269e-02	ci left: 1.347238e-01	ci right 1.371016e-01	k: 43491	n:320000
KS ci ratio: 1.049138e-01	ci left: 4.115787e-03	ci right 4.574511e-03	k: 1389	n:320000
VBP1   320000 perm   92 sec   (3463 perm/sec)   p_kst 4.340625e-03   p_cons 1.359094e-01   p_joint 4.340625e-03

Joint ci ratio: 1.036187e-01	ci left: 4.094358e-03	ci right 4.544718e-03	k: 1424	n:330000
Cons ci ratio: 1.720839e-02	ci left: 1.347083e-01	ci right 1.370496e-01	k: 44839	n:330000
KS ci ratio: 1.036187e-01	ci left: 4.094358e-03	ci right 4.544718e-03	k: 1424	n:330000
VBP1   330000 perm   96 sec   (3420 perm/sec)   p_kst 4.315152e-03   p_cons 1.358758e-01   p_joint 4.315152e-03

Joint ci ratio: 1.019853e-01	ci left: 4.105753e-03	ci right 4.549820e-03	k: 1470	n:340000
Cons ci ratio: 1.695955e-02	ci left: 1.346413e-01	ci right 1.369472e-01	k: 46169	n:340000
KS ci ratio: 1.019853e-01	ci left: 4.105753e-03	ci right 4.549820e-03	k: 1470	n:340000
VBP1   340000 perm   101 sec   (3375 perm/sec)   p_kst 4.323529e-03   p_cons 1.357912e-01   p_joint 4.323529e-03

Joint ci ratio: 1.003935e-01	ci left: 4.119334e-03	ci right 4.557506e-03	k: 1517	n:350000
Cons ci ratio: 1.672141e-02	ci left: 1.345755e-01	ci right 1.368476e-01	k: 47498	n:350000
KS ci ratio: 1.003935e-01	ci left: 4.119334e-03	ci right 4.557506e-03	k: 1517	n:350000
VBP1   350000 perm   105 sec   (3327 perm/sec)   p_kst 4.334286e-03   p_cons 1.357086e-01   p_joint 4.334286e-03

Joint ci ratio: 9.874737e-02	ci left: 4.143049e-03	ci right 4.576100e-03	k: 1568	n:360000
Cons ci ratio: 1.649693e-02	ci left: 1.344583e-01	ci right 1.366976e-01	k: 48807	n:360000
KS ci ratio: 9.874737e-02	ci left: 4.143049e-03	ci right 4.576100e-03	k: 1568	n:360000
VBP1   360000 perm   109 sec   (3288 perm/sec)   p_kst 4.355556e-03   p_cons 1.355750e-01   p_joint 4.355556e-03

Outputting figure to mutsig2_images.part000000000188/VBP1.2_618_360000_0.0043556_0.13558_0.0043556.png
                gene_name: VBP1
               theta_stop: 0.099 
                    nperm: 360000 
                     p_ks: 0.0044 
        ci_ks_bounds_left: 0.0041 
       ci_ks_bounds_right: 0.0046 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.0044 
     ci_joint_bounds_left: 0.0041 
    ci_joint_bounds_right: 0.0046 

Current progress: 89 percent done.
VCL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.290783e-02	ci left: 1.750712e-01	ci right 1.903141e-01	k: 1826	n:10000
Cons ci ratio: 3.293807e-02	ci left: 5.763726e-01	ci right 5.957772e-01	k: 5861	n:10000
KS ci ratio: 1.089551e-01	ci left: 1.083220e-01	ci right 1.209034e-01	k: 1145	n:10000
VCL   10000 perm   2 sec   (5700 perm/sec)   p_kst 1.145000e-01   p_cons 5.861000e-01   p_joint 1.826000e-01

Joint ci ratio: 5.347137e-02	ci left: 2.061051e-01	ci right 2.174788e-01	k: 4235	n:20000
Cons ci ratio: 2.313401e-02	ci left: 5.825446e-01	ci right 5.962294e-01	k: 11788	n:20000
KS ci ratio: 7.758051e-02	ci left: 1.087912e-01	ci right 1.176216e-01	k: 2263	n:20000
VCL   20000 perm   4 sec   (5076 perm/sec)   p_kst 1.131500e-01   p_cons 5.894000e-01   p_joint 2.117500e-01

Outputting figure to mutsig2_images.part000000000188/VCL.2_3493_20000_0.11315_0.5894_0.21175.png
                gene_name: VCL
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 91 percent done.
VENTX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.070229e-03	ci left: 9.922835e-01	ci right 9.954183e-01	k: 9940	n:10000
KS ci ratio: 4.497695e-03	ci left: 9.846908e-01	ci right 9.892189e-01	k: 9871	n:10000
VENTX   10000 perm   1 sec   (6998 perm/sec)   p_kst 9.871000e-01   p_cons 9.940000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000188/VENTX.2_789_10000_0.9871_0.994_1.png
                gene_name: VENTX
               theta_stop: 0.0045 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 1.00 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
VGF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.803565e-02	ci left: 5.051514e-01	ci right 5.248398e-01	k: 5150	n:10000
Cons ci ratio: 2.597292e-02	ci left: 6.857695e-01	ci right 7.039168e-01	k: 6949	n:10000
KS ci ratio: 1.090088e-01	ci left: 1.082244e-01	ci right 1.208011e-01	k: 1144	n:10000
VGF   10000 perm   2 sec   (6423 perm/sec)   p_kst 1.144000e-01   p_cons 6.949000e-01   p_joint 5.150000e-01

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 1.826661e-02	ci left: 6.907789e-01	ci right 7.035638e-01	k: 13944	n:20000
KS ci ratio: 7.802814e-02	ci left: 1.076609e-01	ci right 1.164522e-01	k: 2240	n:20000
VGF   20000 perm   4 sec   (5654 perm/sec)   p_kst 1.120000e-01   p_cons 6.972000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000188/VGF.2_1852_20000_0.112_0.6972_1.png
                gene_name: VGF
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
VGLL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.459607e-02	ci left: 7.085635e-01	ci right 7.263097e-01	k: 7175	n:10000
Cons ci ratio: 1.407139e-02	ci left: 8.795059e-01	ci right 8.920683e-01	k: 8859	n:10000
KS ci ratio: 6.613156e-02	ci left: 2.513249e-01	ci right 2.686151e-01	k: 2599	n:10000
VGLL1   10000 perm   1 sec   (7167 perm/sec)   p_kst 2.599000e-01   p_cons 8.859000e-01   p_joint 7.175000e-01

Outputting figure to mutsig2_images.part000000000188/VGLL1.2_793_10000_0.2599_0.8859_0.7175.png
                gene_name: VGLL1
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 98 percent done.
VGLL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.838763e-02	ci left: 2.387696e-01	ci right 2.557779e-01	k: 2472	n:10000
Cons ci ratio: 8.386407e-02	ci left: 1.717274e-01	ci right 1.868599e-01	k: 1792	n:10000
KS ci ratio: 4.709308e-02	ci left: 3.995407e-01	ci right 4.189122e-01	k: 4092	n:10000
VGLL2   10000 perm   1 sec   (6914 perm/sec)   p_kst 4.092000e-01   p_cons 1.792000e-01   p_joint 2.472000e-01

Outputting figure to mutsig2_images.part000000000188/VGLL2.2_970_10000_0.4092_0.1792_0.2472.png
                gene_name: VGLL2
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000188
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 188 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1643>
Subject: Job 8004689: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1643>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000189> was used as the working directory.
Started at Sun Nov 11 15:25:23 2012
Results reported at Sun Nov 11 15:32:44 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000189.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000189.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 189  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000189.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    473.15 sec.
    Max Memory :      4721 MB
    Max Swap   :      7090 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
189
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 189
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 189: processing genes 17009 - 17099
Calculating significance of each gene.
Using projection method.
17009	VIL1	1
17010	VILL	8.462428e-01
17011	VIM	1.550235e-01
17012	VIP	2.675273e-01
17013	VIPAR	6.280592e-01
17014	VIPR1	1
17015	VIPR2	2.372022e-01
17016	VIT	8.949473e-01
17017	VKORC1	1
17018	VKORC1L1	1
17019	VLDLR	1
17020	VMA21	1.874494e-01
17021	VMAC	1
17022	VMO1	1
17023	VN1R1	3.853010e-02
17024	VN1R2	1.000006e-01
17025	VN1R4	6.449880e-01
17026	VN1R5	2.595802e-04
17027	VNN1	4.245077e-01
17028	VNN2	4.186179e-01
17029	VOPP1	1.500627e-01
17030	VPRBP	1
17031	VPREB1	1
17032	VPREB3	3.521301e-01
17033	VPS11	8.444417e-01
17034	VPS13A	2.873755e-01
17035	VPS13B	9.994120e-01
17036	VPS13C	9.999949e-01
17037	VPS13D	9.999952e-01
17038	VPS16	7.499372e-01
17039	VPS18	9.852969e-01
17040	VPS24	2.444532e-01
17041	VPS25	1
17042	VPS26A	7.429350e-01
17043	VPS26B	7.339166e-01
17044	VPS28	6.724620e-01
17045	VPS29	3.421897e-01
17046	VPS33A	7.610877e-01
17047	VPS33B	8.240316e-01
17048	VPS35	8.242254e-02
17049	VPS36	1
17050	VPS37A	1
17051	VPS37B	1
17052	VPS37C	1
17053	VPS37D	2.491743e-01
17054	VPS39	6.206307e-01
17055	VPS41	1.458086e-01
17056	VPS45	7.418031e-01
17057	VPS4A	6.653679e-01
17058	VPS4B	4.186667e-01
17059	VPS52	8.926525e-01
17060	VPS53	7.783045e-01
17061	VPS54	9.491190e-01
17062	VPS72	1
17063	VPS8	9.776408e-01
17064	VRK1	6.252138e-01
17065	VRK2	7.924224e-03
17066	VRK3	4.521380e-01
17067	VSIG1	1
17068	VSIG10	8.118662e-01
17069	VSIG2	1.840016e-01
17070	VSIG4	1.089026e-01
17071	VSIG8	1
17072	VSNL1	3.485133e-01
17073	VSTM1	1.517738e-02
17074	VSTM2A	1
17075	VSTM2L	3.081401e-01
17076	VSX1	1
17077	VSX2	1
17078	VTA1	1.000442e-01
17079	VTCN1	1
17080	VTI1A	1
17081	VTI1B	1
17082	VTN	1
17083	VWA1	1
17084	VWA2	1
17085	VWA3A	3.890052e-01
17086	VWA3B	3.701604e-02
17087	VWA5A	8.386977e-01
17088	VWC2	2.193283e-01
17089	VWC2L	1
17090	VWCE	1.072743e-01
17091	VWF	8.471811e-01
17092	WAC	1
17093	WAPAL	4.260175e-01
17094	WARS	8.726847e-01
17095	WARS2	3.932408e-01
17096	WAS	5.763578e-02
17097	WASF1	8.711712e-01
17098	WASF2	1
17099	WASF3	8.793125e-01
Done

Running MutSig 2:
Scatter job 189: processing genes 17009 - 17099
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
VPS13B
Processing conservation and coverage...
79% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.575560e-02	ci left: 2.535008e-01	ci right 2.708379e-01	k: 2621	n:10000
Cons ci ratio: 6.471812e-02	ci left: 2.596344e-01	ci right 2.771008e-01	k: 2683	n:10000
KS ci ratio: 6.334593e-02	ci left: 2.680468e-01	ci right 2.856834e-01	k: 2768	n:10000
VPS13B   10000 perm   4 sec   (2763 perm/sec)   p_kst 2.768000e-01   p_cons 2.683000e-01   p_joint 2.621000e-01

Outputting figure to mutsig2_images.part000000000189/VPS13B.25_12507_10000_0.2768_0.2683_0.2621.png
                gene_name: VPS13B
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 2 percent done.
VWF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.814967e-02	ci left: 2.400544e-01	ci right 2.570923e-01	k: 2485	n:10000
Cons ci ratio: 8.377868e-02	ci left: 1.720224e-01	ci right 1.871647e-01	k: 1795	n:10000
KS ci ratio: 4.925322e-02	ci left: 3.781344e-01	ci right 3.973310e-01	k: 3877	n:10000
VWF   10000 perm   3 sec   (3309 perm/sec)   p_kst 3.877000e-01   p_cons 1.795000e-01   p_joint 2.485000e-01

Outputting figure to mutsig2_images.part000000000189/VWF.17_8646_10000_0.3877_0.1795_0.2485.png
                gene_name: VWF
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 4 percent done.
VPS13A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.412956e-02	ci left: 7.163357e-01	ci right 7.339330e-01	k: 7252	n:10000
Cons ci ratio: 2.578324e-02	ci left: 6.888946e-01	ci right 7.069900e-01	k: 6980	n:10000
KS ci ratio: 4.278265e-02	ci left: 4.465016e-01	ci right 4.661239e-01	k: 4563	n:10000
VPS13A   10000 perm   3 sec   (3333 perm/sec)   p_kst 4.563000e-01   p_cons 6.980000e-01   p_joint 7.252000e-01

Outputting figure to mutsig2_images.part000000000189/VPS13A.16_9941_10000_0.4563_0.698_0.7252.png
                gene_name: VPS13A
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 6 percent done.
VPS13D
Processing conservation and coverage...
74% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.969783e-02	ci left: 6.257775e-01	ci right 6.447437e-01	k: 6353	n:10000
Cons ci ratio: 5.719572e-02	ci left: 3.103647e-01	ci right 3.287406e-01	k: 3195	n:10000
KS ci ratio: 2.296963e-02	ci left: 7.357303e-01	ci right 7.529272e-01	k: 7444	n:10000
VPS13D   10000 perm   4 sec   (2737 perm/sec)   p_kst 7.444000e-01   p_cons 3.195000e-01   p_joint 6.353000e-01

Outputting figure to mutsig2_images.part000000000189/VPS13D.16_13443_10000_0.7444_0.3195_0.6353.png
                gene_name: VPS13D
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.64 

Current progress: 8 percent done.
VWA3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.519152e-02	ci left: 6.986761e-01	ci right 7.166028e-01	k: 7077	n:10000
Cons ci ratio: 2.802049e-02	ci left: 6.524314e-01	ci right 6.710743e-01	k: 6618	n:10000
KS ci ratio: 3.983416e-02	ci left: 4.820550e-01	ci right 5.017497e-01	k: 4919	n:10000
VWA3B   10000 perm   2 sec   (4397 perm/sec)   p_kst 4.919000e-01   p_cons 6.618000e-01   p_joint 7.077000e-01

Outputting figure to mutsig2_images.part000000000189/VWA3B.15_3993_10000_0.4919_0.6618_0.7077.png
                gene_name: VWA3B
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 10 percent done.
VPS13C
Processing conservation and coverage...
85% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.052060e-01	ci left: 1.154507e-01	ci right 1.283705e-01	k: 1218	n:10000
Cons ci ratio: 7.936930e-03	ci left: 9.567051e-01	ci right 9.644236e-01	k: 9607	n:10000
KS ci ratio: 1.522044e-01	ci left: 5.744795e-02	ci right 6.700903e-02	k: 621	n:10000
VPS13C   10000 perm   3 sec   (3341 perm/sec)   p_kst 6.210000e-02   p_cons 9.607000e-01   p_joint 1.218000e-01

Joint ci ratio: 7.495449e-02	ci left: 1.157727e-01	ci right 1.248380e-01	k: 2405	n:20000
Cons ci ratio: 5.575790e-03	ci left: 9.583790e-01	ci right 9.637859e-01	k: 19223	n:20000
KS ci ratio: 1.082314e-01	ci left: 5.820936e-02	ci right 6.491880e-02	k: 1230	n:20000
VPS13C   20000 perm   6 sec   (3095 perm/sec)   p_kst 6.150000e-02   p_cons 9.611500e-01   p_joint 1.202500e-01

Joint ci ratio: 6.045075e-02	ci left: 1.192047e-01	ci right 1.266685e-01	k: 3687	n:30000
Cons ci ratio: 4.331042e-03	ci left: 9.625496e-01	ci right 9.667598e-01	k: 28941	n:30000
KS ci ratio: 8.926314e-02	ci left: 5.769763e-02	ci right 6.312122e-02	k: 1811	n:30000
VPS13C   30000 perm   10 sec   (2999 perm/sec)   p_kst 6.036667e-02   p_cons 9.647000e-01   p_joint 1.229000e-01

Outputting figure to mutsig2_images.part000000000189/VPS13C.10_11630_30000_0.060367_0.9647_0.1229.png
                gene_name: VPS13C
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.060 
        ci_ks_bounds_left: 0.058 
       ci_ks_bounds_right: 0.063 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 12 percent done.
VN1R5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.508764e-02	ci left: 4.206670e-01	ci right 4.401735e-01	k: 4304	n:10000
Cons ci ratio: 1.813674e-02	ci left: 8.160871e-01	ci right 8.311239e-01	k: 8237	n:10000
KS ci ratio: 6.169492e-02	ci left: 2.786422e-01	ci right 2.964817e-01	k: 2875	n:10000
VN1R5   10000 perm   2 sec   (5138 perm/sec)   p_kst 2.875000e-01   p_cons 8.237000e-01   p_joint 4.304000e-01

Outputting figure to mutsig2_images.part000000000189/VN1R5.9_1077_10000_0.2875_0.8237_0.4304.png
                gene_name: VN1R5
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 15 percent done.
VPS8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.584068e-01	ci left: 5.311294e-02	ci right 6.234681e-02	k: 576	n:10000
Cons ci ratio: 2.213094e-02	ci left: 7.497846e-01	ci right 7.666647e-01	k: 7583	n:10000
KS ci ratio: 2.537862e-01	ci left: 2.033901e-02	ci right 2.634310e-02	k: 232	n:10000
VPS8   10000 perm   2 sec   (4367 perm/sec)   p_kst 2.320000e-02   p_cons 7.583000e-01   p_joint 5.760000e-02

Joint ci ratio: 1.248127e-01	ci left: 4.405941e-02	ci right 4.997318e-02	k: 939	n:20000
Cons ci ratio: 1.540564e-02	ci left: 7.580520e-01	ci right 7.698712e-01	k: 15280	n:20000
KS ci ratio: 1.794582e-01	ci left: 2.120602e-02	ci right 2.543413e-02	k: 465	n:20000
VPS8   20000 perm   5 sec   (4019 perm/sec)   p_kst 2.325000e-02   p_cons 7.640000e-01   p_joint 4.695000e-02

Joint ci ratio: 8.889821e-02	ci left: 5.815453e-02	ci right 6.359756e-02	k: 1825	n:30000
Cons ci ratio: 1.258679e-02	ci left: 7.589180e-01	ci right 7.685642e-01	k: 22913	n:30000
KS ci ratio: 1.449437e-01	ci left: 2.207259e-02	ci right 2.555380e-02	k: 713	n:30000
VPS8   30000 perm   8 sec   (3787 perm/sec)   p_kst 2.376667e-02   p_cons 7.637667e-01   p_joint 6.083333e-02

Joint ci ratio: 7.620269e-02	ci left: 5.968063e-02	ci right 6.443319e-02	k: 2481	n:40000
Cons ci ratio: 1.083982e-02	ci left: 7.615929e-01	ci right 7.699184e-01	k: 30631	n:40000
KS ci ratio: 1.273883e-01	ci left: 2.165006e-02	ci right 2.461973e-02	k: 924	n:40000
VPS8   40000 perm   11 sec   (3718 perm/sec)   p_kst 2.310000e-02   p_cons 7.657750e-01   p_joint 6.202500e-02

Joint ci ratio: 6.467669e-02	ci left: 6.622219e-02	ci right 7.066808e-02	k: 3421	n:50000
Cons ci ratio: 9.638528e-03	ci left: 7.641540e-01	ci right 7.715749e-01	k: 38394	n:50000
KS ci ratio: 1.138517e-01	ci left: 2.183991e-02	ci right 2.449585e-02	k: 1157	n:50000
VPS8   50000 perm   14 sec   (3654 perm/sec)   p_kst 2.314000e-02   p_cons 7.678800e-01   p_joint 6.842000e-02

Joint ci ratio: 7.665277e-02	ci left: 4.016342e-02	ci right 4.338109e-02	k: 2505	n:60000
Cons ci ratio: 8.795770e-03	ci left: 7.646012e-01	ci right 7.713728e-01	k: 46080	n:60000
KS ci ratio: 1.057618e-01	ci left: 2.119827e-02	ci right 2.358157e-02	k: 1342	n:60000
VPS8   60000 perm   17 sec   (3592 perm/sec)   p_kst 2.236667e-02   p_cons 7.680000e-01   p_joint 4.175000e-02

Joint ci ratio: 7.071054e-02	ci left: 4.056804e-02	ci right 4.355578e-02	k: 2943	n:70000
Cons ci ratio: 8.157663e-03	ci left: 7.642233e-01	ci right 7.704974e-01	k: 53716	n:70000
KS ci ratio: 9.752989e-02	ci left: 2.145589e-02	ci right 2.366964e-02	k: 1578	n:70000
VPS8   70000 perm   20 sec   (3544 perm/sec)   p_kst 2.254286e-02   p_cons 7.673714e-01   p_joint 4.204286e-02

Outputting figure to mutsig2_images.part000000000189/VPS8.7_4471_70000_0.022543_0.76737_0.042043.png
                gene_name: VPS8
               theta_stop: 0.098 
                    nperm: 70000 
                     p_ks: 0.023 
        ci_ks_bounds_left: 0.021 
       ci_ks_bounds_right: 0.024 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.042 
     ci_joint_bounds_left: 0.041 
    ci_joint_bounds_right: 0.044 

Current progress: 17 percent done.
VWCE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.115201e-02	ci left: 7.661798e-01	ci right 7.826601e-01	k: 7745	n:10000
Cons ci ratio: 2.721716e-03	ci left: 9.937548e-01	ci right 9.965446e-01	k: 9953	n:10000
KS ci ratio: 2.990962e-02	ci left: 6.224605e-01	ci right 6.414626e-01	k: 6320	n:10000
VWCE   10000 perm   2 sec   (5005 perm/sec)   p_kst 6.320000e-01   p_cons 9.953000e-01   p_joint 7.745000e-01

Outputting figure to mutsig2_images.part000000000189/VWCE.7_2948_10000_0.632_0.9953_0.7745.png
                gene_name: VWCE
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 1.00 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 19 percent done.
VIM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.136378e-02	ci left: 7.626362e-01	ci right 7.792057e-01	k: 7710	n:10000
Cons ci ratio: 3.157826e-02	ci left: 5.967448e-01	ci right 6.159932e-01	k: 6064	n:10000
KS ci ratio: 2.843462e-02	ci left: 6.457901e-01	ci right 6.645195e-01	k: 6552	n:10000
VIM   10000 perm   2 sec   (5826 perm/sec)   p_kst 6.552000e-01   p_cons 6.064000e-01   p_joint 7.710000e-01

Outputting figure to mutsig2_images.part000000000189/VIM.6_1437_10000_0.6552_0.6064_0.771.png
                gene_name: VIM
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 21 percent done.
VPS35
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.400848e-02	ci left: 5.607287e-01	ci right 5.802302e-01	k: 5705	n:10000
KS ci ratio: 1.466975e-02	ci left: 8.706072e-01	ci right 8.835722e-01	k: 8772	n:10000
VPS35   10000 perm   2 sec   (5445 perm/sec)   p_kst 8.772000e-01   p_cons 5.705000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000189/VPS35.6_2459_10000_0.8772_0.5705_1.png
                gene_name: VPS35
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 23 percent done.
VPS41
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.826145e-02	ci left: 8.140546e-01	ci right 8.291576e-01	k: 8217	n:10000
KS ci ratio: 1.403660e-02	ci left: 8.800177e-01	ci right 8.925563e-01	k: 8864	n:10000
VPS41   10000 perm   2 sec   (5646 perm/sec)   p_kst 8.864000e-01   p_cons 8.217000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000189/VPS41.6_2681_10000_0.8864_0.8217_1.png
                gene_name: VPS41
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 25 percent done.
VRK2
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.056825e-02	ci left: 2.274091e-01	ci right 2.441451e-01	k: 2357	n:10000
Cons ci ratio: 1.057999e-01	ci left: 1.142783e-01	ci right 1.271436e-01	k: 1206	n:10000
KS ci ratio: 6.045373e-02	ci left: 2.869643e-01	ci right 3.049547e-01	k: 2959	n:10000
VRK2   10000 perm   2 sec   (5492 perm/sec)   p_kst 2.959000e-01   p_cons 1.206000e-01   p_joint 2.357000e-01

Joint ci ratio: 6.292600e-02	ci left: 1.573622e-01	ci right 1.676361e-01	k: 3249	n:20000
Cons ci ratio: 7.578032e-02	ci left: 1.135105e-01	ci right 1.225008e-01	k: 2359	n:20000
KS ci ratio: 4.266550e-02	ci left: 2.904238e-01	ci right 3.031354e-01	k: 5935	n:20000
VRK2   20000 perm   4 sec   (4979 perm/sec)   p_kst 2.967500e-01   p_cons 1.179500e-01   p_joint 1.624500e-01

Outputting figure to mutsig2_images.part000000000189/VRK2.5_1588_20000_0.29675_0.11795_0.16245.png
                gene_name: VRK2
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 27 percent done.
VNN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.955229e-02	ci left: 2.932083e-01	ci right 3.113070e-01	k: 3022	n:10000
Cons ci ratio: 2.157537e-02	ci left: 7.590934e-01	ci right 7.757506e-01	k: 7675	n:10000
KS ci ratio: 7.665324e-02	ci left: 1.992924e-01	ci right 2.152785e-01	k: 2072	n:10000
VNN2   10000 perm   2 sec   (5700 perm/sec)   p_kst 2.072000e-01   p_cons 7.675000e-01   p_joint 3.022000e-01

Outputting figure to mutsig2_images.part000000000189/VNN2.5_1591_10000_0.2072_0.7675_0.3022.png
                gene_name: VNN2
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 29 percent done.
VWA3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.911164e-02	ci left: 2.349160e-01	ci right 2.518337e-01	k: 2433	n:10000
Cons ci ratio: 1.463924e-01	ci left: 6.198316e-02	ci right 7.187095e-02	k: 668	n:10000
KS ci ratio: 5.644165e-02	ci left: 3.161198e-01	ci right 3.345821e-01	k: 3253	n:10000
VWA3A   10000 perm   2 sec   (4632 perm/sec)   p_kst 3.253000e-01   p_cons 6.680000e-02   p_joint 2.433000e-01

Joint ci ratio: 6.511643e-02	ci left: 1.483819e-01	ci right 1.584191e-01	k: 3067	n:20000
Cons ci ratio: 1.025756e-01	ci left: 6.454903e-02	ci right 7.157718e-02	k: 1360	n:20000
KS ci ratio: 4.031834e-02	ci left: 3.144317e-01	ci right 3.274204e-01	k: 6418	n:20000
VWA3A   20000 perm   5 sec   (4281 perm/sec)   p_kst 3.209000e-01   p_cons 6.800000e-02   p_joint 1.533500e-01

Joint ci ratio: 5.423673e-02	ci left: 1.442629e-01	ci right 1.523386e-01	k: 4448	n:30000
Cons ci ratio: 8.102858e-02	ci left: 6.942693e-02	ci right 7.532287e-02	k: 2170	n:30000
KS ci ratio: 3.283315e-02	ci left: 3.167799e-01	ci right 3.273879e-01	k: 9662	n:30000
VWA3A   30000 perm   7 sec   (4051 perm/sec)   p_kst 3.220667e-01   p_cons 7.233333e-02   p_joint 1.482667e-01

Outputting figure to mutsig2_images.part000000000189/VWA3A.5_3687_30000_0.32207_0.072333_0.14827.png
                gene_name: VWA3A
               theta_stop: 0.081 
                    nperm: 30000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.072 
      ci_cons_bounds_left: 0.069 
     ci_cons_bounds_right: 0.075 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 31 percent done.
VWA5A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.814967e-02	ci left: 2.400544e-01	ci right 2.570923e-01	k: 2485	n:10000
Cons ci ratio: 2.264382e-02	ci left: 7.411889e-01	ci right 7.582654e-01	k: 7498	n:10000
KS ci ratio: 1.117267e-01	ci left: 1.034441e-01	ci right 1.157844e-01	k: 1095	n:10000
VWA5A   10000 perm   2 sec   (5616 perm/sec)   p_kst 1.095000e-01   p_cons 7.498000e-01   p_joint 2.485000e-01

Joint ci ratio: 5.832301e-02	ci left: 1.788488e-01	ci right 1.896432e-01	k: 3684	n:20000
Cons ci ratio: 1.564901e-02	ci left: 7.523045e-01	ci right 7.642204e-01	k: 15166	n:20000
KS ci ratio: 7.793027e-02	ci left: 1.079067e-01	ci right 1.167064e-01	k: 2245	n:20000
VWA5A   20000 perm   4 sec   (5033 perm/sec)   p_kst 1.122500e-01   p_cons 7.583000e-01   p_joint 1.842000e-01

Outputting figure to mutsig2_images.part000000000189/VWA5A.5_2433_20000_0.11225_0.7583_0.1842.png
                gene_name: VWA5A
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 33 percent done.
WAPAL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.391782e-02	ci left: 7.198696e-01	ci right 7.373970e-01	k: 7287	n:10000
KS ci ratio: 1.215078e-02	ci left: 9.066881e-01	ci right 9.178704e-01	k: 9124	n:10000
WAPAL   10000 perm   2 sec   (4775 perm/sec)   p_kst 9.124000e-01   p_cons 7.287000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000189/WAPAL.5_3645_10000_0.9124_0.7287_1.png
                gene_name: WAPAL
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 35 percent done.
VN1R1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.177165e-02	ci left: 3.548587e-01	ci right 3.738204e-01	k: 3643	n:10000
Cons ci ratio: 5.239198e-02	ci left: 3.493913e-01	ci right 3.682910e-01	k: 3588	n:10000
KS ci ratio: 5.283892e-02	ci left: 3.455153e-01	ci right 3.643693e-01	k: 3549	n:10000
VN1R1   10000 perm   2 sec   (6305 perm/sec)   p_kst 3.549000e-01   p_cons 3.588000e-01   p_joint 3.643000e-01

Outputting figure to mutsig2_images.part000000000189/VN1R1.4_1066_10000_0.3549_0.3588_0.3643.png
                gene_name: VN1R1
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 38 percent done.
VPS16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.887162e-02	ci left: 3.818169e-01	ci right 4.010464e-01	k: 3914	n:10000
Cons ci ratio: 7.317031e-02	ci left: 2.147744e-01	ci right 2.311873e-01	k: 2229	n:10000
KS ci ratio: 6.339341e-02	ci left: 2.677498e-01	ci right 2.853805e-01	k: 2765	n:10000
VPS16   10000 perm   2 sec   (5626 perm/sec)   p_kst 2.765000e-01   p_cons 2.229000e-01   p_joint 3.914000e-01

Outputting figure to mutsig2_images.part000000000189/VPS16.4_2616_10000_0.2765_0.2229_0.3914.png
                gene_name: VPS16
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 40 percent done.
VSIG4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.888903e-02	ci left: 6.385473e-01	ci right 6.573664e-01	k: 6480	n:10000
Cons ci ratio: 2.844721e-02	ci left: 6.455889e-01	ci right 6.643208e-01	k: 6550	n:10000
KS ci ratio: 4.722967e-02	ci left: 3.981463e-01	ci right 4.175075e-01	k: 4078	n:10000
VSIG4   10000 perm   2 sec   (6118 perm/sec)   p_kst 4.078000e-01   p_cons 6.550000e-01   p_joint 6.480000e-01

Outputting figure to mutsig2_images.part000000000189/VSIG4.4_1236_10000_0.4078_0.655_0.648.png
                gene_name: VSIG4
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 42 percent done.
VSTM1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.769670e-02	ci left: 2.425253e-01	ci right 2.596199e-01	k: 2510	n:10000
Cons ci ratio: 9.960716e-02	ci left: 1.273806e-01	ci right 1.408333e-01	k: 1340	n:10000
KS ci ratio: 3.904550e-02	ci left: 4.920509e-01	ci right 5.117480e-01	k: 5019	n:10000
VSTM1   10000 perm   2 sec   (6349 perm/sec)   p_kst 5.019000e-01   p_cons 1.340000e-01   p_joint 2.510000e-01

Outputting figure to mutsig2_images.part000000000189/VSTM1.3_747_10000_0.5019_0.134_0.251.png
                gene_name: VSTM1
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 44 percent done.
WARS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.549450e-02	ci left: 4.162808e-01	ci right 4.357623e-01	k: 4260	n:10000
Cons ci ratio: 3.454578e-02	ci left: 5.530107e-01	ci right 5.725527e-01	k: 5628	n:10000
KS ci ratio: 7.080402e-02	ci left: 2.262242e-01	ci right 2.429307e-01	k: 2345	n:10000
WARS   10000 perm   2 sec   (6070 perm/sec)   p_kst 2.345000e-01   p_cons 5.628000e-01   p_joint 4.260000e-01

Outputting figure to mutsig2_images.part000000000189/WARS.4_1456_10000_0.2345_0.5628_0.426.png
                gene_name: WARS
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 46 percent done.
WAS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.944572e-02	ci left: 4.869525e-01	ci right 5.066494e-01	k: 4968	n:10000
Cons ci ratio: 8.018115e-02	ci left: 1.851083e-01	ci right 2.006710e-01	k: 1928	n:10000
KS ci ratio: 6.440827e-03	ci left: 9.704780e-01	ci right 9.768420e-01	k: 9738	n:10000
WAS   10000 perm   2 sec   (5714 perm/sec)   p_kst 9.738000e-01   p_cons 1.928000e-01   p_joint 4.968000e-01

Outputting figure to mutsig2_images.part000000000189/WAS.4_1557_10000_0.9738_0.1928_0.4968.png
                gene_name: WAS
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 48 percent done.
VIPR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.487901e-01	ci left: 6.005239e-02	ci right 6.980294e-02	k: 648	n:10000
Cons ci ratio: 1.647107e-01	ci left: 4.917009e-02	ci right 5.809220e-02	k: 535	n:10000
KS ci ratio: 9.280271e-02	ci left: 1.443289e-01	ci right 1.584748e-01	k: 1513	n:10000
VIPR2   10000 perm   1 sec   (6739 perm/sec)   p_kst 1.513000e-01   p_cons 5.350000e-02   p_joint 6.480000e-02

Joint ci ratio: 6.967104e-02	ci left: 1.318685e-01	ci right 1.414374e-01	k: 2732	n:20000
Cons ci ratio: 1.175757e-01	ci left: 4.954642e-02	ci right 5.578445e-02	k: 1052	n:20000
KS ci ratio: 6.596943e-02	ci left: 1.450775e-01	ci right 1.550245e-01	k: 3000	n:20000
VIPR2   20000 perm   3 sec   (5915 perm/sec)   p_kst 1.500000e-01   p_cons 5.260000e-02   p_joint 1.366000e-01

Joint ci ratio: 5.504541e-02	ci left: 1.406052e-01	ci right 1.485971e-01	k: 4337	n:30000
Cons ci ratio: 9.528656e-02	ci left: 5.084996e-02	ci right 5.597030e-02	k: 1601	n:30000
KS ci ratio: 5.378330e-02	ci left: 1.463723e-01	ci right 1.544955e-01	k: 4512	n:30000
VIPR2   30000 perm   5 sec   (5620 perm/sec)   p_kst 1.504000e-01   p_cons 5.336667e-02   p_joint 1.445667e-01

Outputting figure to mutsig2_images.part000000000189/VIPR2.3_1369_30000_0.1504_0.053367_0.14457.png
                gene_name: VIPR2
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.053 
      ci_cons_bounds_left: 0.051 
     ci_cons_bounds_right: 0.056 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 50 percent done.
VIT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.847961e-02	ci left: 4.993504e-01	ci right 5.190443e-01	k: 5092	n:10000
Cons ci ratio: 1.213381e-01	ci left: 8.873809e-02	ci right 1.002994e-01	k: 944	n:10000
KS ci ratio: 2.628565e-02	ci left: 6.806294e-01	ci right 6.988600e-01	k: 6898	n:10000
VIT   10000 perm   2 sec   (5721 perm/sec)   p_kst 6.898000e-01   p_cons 9.440000e-02   p_joint 5.092000e-01

Joint ci ratio: 2.973237e-02	ci left: 4.580180e-01	ci right 4.718921e-01	k: 9299	n:20000
Cons ci ratio: 8.510625e-02	ci left: 9.180406e-02	ci right 1.000139e-01	k: 1917	n:20000
KS ci ratio: 1.855694e-02	ci left: 6.840408e-01	ci right 6.969038e-01	k: 13810	n:20000
VIT   20000 perm   4 sec   (5106 perm/sec)   p_kst 6.905000e-01   p_cons 9.585000e-02   p_joint 4.649500e-01

Outputting figure to mutsig2_images.part000000000189/VIT.3_2267_20000_0.6905_0.09585_0.46495.png
                gene_name: VIT
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.096 
      ci_cons_bounds_left: 0.092 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.47 

Current progress: 52 percent done.
VN1R2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.625609e-02	ci left: 4.082083e-01	ci right 4.276396e-01	k: 4179	n:10000
Cons ci ratio: 1.127940e-02	ci left: 9.182193e-01	ci right 9.287325e-01	k: 9236	n:10000
KS ci ratio: 8.310267e-02	ci left: 1.743827e-01	ci right 1.896031e-01	k: 1819	n:10000
VN1R2   10000 perm   2 sec   (6622 perm/sec)   p_kst 1.819000e-01   p_cons 9.236000e-01   p_joint 4.179000e-01

Outputting figure to mutsig2_images.part000000000189/VN1R2.3_1192_10000_0.1819_0.9236_0.4179.png
                gene_name: VN1R2
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 54 percent done.
VN1R4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.569727e-02	ci left: 5.367804e-01	ci right 5.563924e-01	k: 5466	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
VN1R4   10000 perm   2 sec   (5665 perm/sec)   p_kst 1   p_cons 5.466000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000189/VN1R4.3_909_10000_1_0.5466_1.png
                gene_name: VN1R4
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 56 percent done.
VPRBP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.095449e-03	ci left: 9.921711e-01	ci right 9.953309e-01	k: 9939	n:10000
Cons ci ratio: 2.379086e-02	ci left: 7.219903e-01	ci right 7.394751e-01	k: 7308	n:10000
KS ci ratio: 2.782048e-02	ci left: 6.556521e-01	ci right 6.742517e-01	k: 6650	n:10000
VPRBP   10000 perm   2 sec   (4820 perm/sec)   p_kst 6.650000e-01   p_cons 7.308000e-01   p_joint 9.939000e-01

Outputting figure to mutsig2_images.part000000000189/VPRBP.3_4453_10000_0.665_0.7308_0.9939.png
                gene_name: VPRBP
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 1.00 

Current progress: 58 percent done.
VPS11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.497436e-02	ci left: 8.660086e-01	ci right 8.791735e-01	k: 8727	n:10000
Cons ci ratio: 4.838285e-02	ci left: 3.865951e-01	ci right 4.058654e-01	k: 3962	n:10000
KS ci ratio: 4.065557e-02	ci left: 4.718633e-01	ci right 4.915474e-01	k: 4817	n:10000
VPS11   10000 perm   2 sec   (5890 perm/sec)   p_kst 4.817000e-01   p_cons 3.962000e-01   p_joint 8.727000e-01

Outputting figure to mutsig2_images.part000000000189/VPS11.3_2889_10000_0.4817_0.3962_0.8727.png
                gene_name: VPS11
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 60 percent done.
VPS39
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.641121e-02	ci left: 8.437668e-01	ci right 8.578282e-01	k: 8509	n:10000
KS ci ratio: 6.939316e-03	ci left: 9.661506e-01	ci right 9.729722e-01	k: 9697	n:10000
VPS39   10000 perm   2 sec   (5017 perm/sec)   p_kst 9.697000e-01   p_cons 8.509000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000189/VPS39.3_2728_10000_0.9697_0.8509_1.png
                gene_name: VPS39
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
VSIG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.601493e-02	ci left: 8.499848e-01	ci right 8.638066e-01	k: 8570	n:10000
Cons ci ratio: 5.734068e-02	ci left: 3.092734e-01	ci right 3.276325e-01	k: 3184	n:10000
KS ci ratio: 3.306040e-02	ci left: 5.745671e-01	ci right 5.939838e-01	k: 5843	n:10000
VSIG2   10000 perm   2 sec   (6398 perm/sec)   p_kst 5.843000e-01   p_cons 3.184000e-01   p_joint 8.570000e-01

Outputting figure to mutsig2_images.part000000000189/VSIG2.3_1012_10000_0.5843_0.3184_0.857.png
                gene_name: VSIG2
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 65 percent done.
VSTM2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.762664e-02	ci left: 5.105536e-01	ci right 5.302345e-01	k: 5204	n:10000
Cons ci ratio: 5.547877e-02	ci left: 3.236634e-01	ci right 3.422340e-01	k: 3329	n:10000
KS ci ratio: 5.031728e-02	ci left: 3.680851e-01	ci right 3.871862e-01	k: 3776	n:10000
VSTM2A   10000 perm   2 sec   (6546 perm/sec)   p_kst 3.776000e-01   p_cons 3.329000e-01   p_joint 5.204000e-01

Outputting figure to mutsig2_images.part000000000189/VSTM2A.3_731_10000_0.3776_0.3329_0.5204.png
                gene_name: VSTM2A
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 67 percent done.
VTA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.391837e-02	ci left: 5.620320e-01	ci right 5.815262e-01	k: 5718	n:10000
Cons ci ratio: 7.465850e-02	ci left: 2.079681e-01	ci right 2.241977e-01	k: 2160	n:10000
KS ci ratio: 1.153289e-02	ci left: 9.149216e-01	ci right 9.256321e-01	k: 9204	n:10000
VTA1   10000 perm   2 sec   (6435 perm/sec)   p_kst 9.204000e-01   p_cons 2.160000e-01   p_joint 5.718000e-01

Outputting figure to mutsig2_images.part000000000189/VTA1.3_956_10000_0.9204_0.216_0.5718.png
                gene_name: VTA1
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 69 percent done.
VWC2L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.511784e-02	ci left: 5.448942e-01	ci right 5.644739e-01	k: 5547	n:10000
Cons ci ratio: 3.917845e-02	ci left: 4.903513e-01	ci right 5.100486e-01	k: 5002	n:10000
KS ci ratio: 4.244799e-02	ci left: 4.503941e-01	ci right 4.700291e-01	k: 4602	n:10000
VWC2L   10000 perm   2 sec   (6511 perm/sec)   p_kst 4.602000e-01   p_cons 5.002000e-01   p_joint 5.547000e-01

Outputting figure to mutsig2_images.part000000000189/VWC2L.3_681_10000_0.4602_0.5002_0.5547.png
                gene_name: VWC2L
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 71 percent done.
VIL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.594306e-02	ci left: 2.524128e-01	ci right 2.697266e-01	k: 2610	n:10000
Cons ci ratio: 1.048516e-02	ci left: 9.282324e-01	ci right 9.381134e-01	k: 9333	n:10000
KS ci ratio: 1.174650e-01	ci left: 9.428457e-02	ci right 1.061495e-01	k: 1001	n:10000
VIL1   10000 perm   2 sec   (5995 perm/sec)   p_kst 1.001000e-01   p_cons 9.333000e-01   p_joint 2.610000e-01

Joint ci ratio: 6.962678e-02	ci left: 1.320163e-01	ci right 1.415895e-01	k: 2735	n:20000
Cons ci ratio: 7.253199e-03	ci left: 9.324679e-01	ci right 9.393047e-01	k: 18719	n:20000
KS ci ratio: 8.301585e-02	ci left: 9.612099e-02	ci right 1.044956e-01	k: 2005	n:20000
VIL1   20000 perm   4 sec   (5305 perm/sec)   p_kst 1.002500e-01   p_cons 9.359500e-01   p_joint 1.367500e-01

Outputting figure to mutsig2_images.part000000000189/VIL1.2_2560_20000_0.10025_0.93595_0.13675.png
                gene_name: VIL1
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.096 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 73 percent done.
VILL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.768106e-02	ci left: 1.318837e-01	ci right 1.455275e-01	k: 1386	n:10000
Cons ci ratio: 8.789393e-02	ci left: 1.585590e-01	ci right 1.732362e-01	k: 1658	n:10000
KS ci ratio: 6.918678e-02	ci left: 2.345208e-01	ci right 2.514292e-01	k: 2429	n:10000
VILL   10000 perm   2 sec   (5762 perm/sec)   p_kst 2.429000e-01   p_cons 1.658000e-01   p_joint 1.386000e-01

Outputting figure to mutsig2_images.part000000000189/VILL.2_2647_10000_0.2429_0.1658_0.1386.png
                gene_name: VILL
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.15 

Current progress: 75 percent done.
VIPAR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.660225e-03	ci left: 9.594273e-01	ci right 9.668997e-01	k: 9633	n:10000
Cons ci ratio: 4.969165e-02	ci left: 3.739550e-01	ci right 3.931129e-01	k: 3835	n:10000
KS ci ratio: 2.232405e-02	ci left: 7.465480e-01	ci right 7.635031e-01	k: 7551	n:10000
VIPAR   10000 perm   2 sec   (6284 perm/sec)   p_kst 7.551000e-01   p_cons 3.835000e-01   p_joint 9.633000e-01

Outputting figure to mutsig2_images.part000000000189/VIPAR.2_1558_10000_0.7551_0.3835_0.9633.png
                gene_name: VIPAR
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 77 percent done.
VNN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.712279e-02	ci left: 1.973215e-01	ci right 2.132506e-01	k: 2052	n:10000
KS ci ratio: 2.595455e-02	ci left: 6.860719e-01	ci right 7.042143e-01	k: 6952	n:10000
VNN1   10000 perm   2 sec   (6277 perm/sec)   p_kst 6.952000e-01   p_cons 2.052000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000189/VNN1.2_1570_10000_0.6952_0.2052_1.png
                gene_name: VNN1
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
VOPP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.829005e-02	ci left: 6.481042e-01	ci right 6.668040e-01	k: 6575	n:10000
Cons ci ratio: 1.958236e-02	ci left: 7.923276e-01	ci right 8.080971e-01	k: 8003	n:10000
KS ci ratio: 3.632827e-02	ci left: 5.280685e-01	ci right 5.477094e-01	k: 5379	n:10000
VOPP1   10000 perm   1 sec   (6841 perm/sec)   p_kst 5.379000e-01   p_cons 8.003000e-01   p_joint 6.575000e-01

Outputting figure to mutsig2_images.part000000000189/VOPP1.2_539_10000_0.5379_0.8003_0.6575.png
                gene_name: VOPP1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 81 percent done.
VPS24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.214319e-02	ci left: 9.067909e-01	ci right 9.179675e-01	k: 9125	n:10000
Cons ci ratio: 2.118228e-02	ci left: 7.656735e-01	ci right 7.821666e-01	k: 7740	n:10000
KS ci ratio: 6.048275e-02	ci left: 2.867661e-01	ci right 3.047530e-01	k: 2957	n:10000
VPS24   10000 perm   1 sec   (6775 perm/sec)   p_kst 2.957000e-01   p_cons 7.740000e-01   p_joint 9.125000e-01

Outputting figure to mutsig2_images.part000000000189/VPS24.2_693_10000_0.2957_0.774_0.9125.png
                gene_name: VPS24
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 83 percent done.
VPS33A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.522805e-02	ci left: 6.980709e-01	ci right 7.160083e-01	k: 7071	n:10000
KS ci ratio: 2.204644e-02	ci left: 7.512008e-01	ci right 7.680477e-01	k: 7597	n:10000
VPS33A   10000 perm   2 sec   (6108 perm/sec)   p_kst 7.597000e-01   p_cons 7.071000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000189/VPS33A.2_1843_10000_0.7597_0.7071_1.png
                gene_name: VPS33A
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 85 percent done.
VPS45
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.249299e-02	ci left: 7.437166e-01	ci right 7.607363e-01	k: 7523	n:10000
Cons ci ratio: 8.998313e-02	ci left: 1.522755e-01	ci right 1.667234e-01	k: 1594	n:10000
KS ci ratio: 1.348025e-02	ci left: 8.881088e-01	ci right 9.002605e-01	k: 8943	n:10000
VPS45   10000 perm   2 sec   (6399 perm/sec)   p_kst 8.943000e-01   p_cons 1.594000e-01   p_joint 7.523000e-01

Outputting figure to mutsig2_images.part000000000189/VPS45.2_1773_10000_0.8943_0.1594_0.7523.png
                gene_name: VPS45
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 88 percent done.
VPS4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.256613e-02	ci left: 5.818905e-01	ci right 6.012561e-01	k: 5916	n:10000
Cons ci ratio: 3.457387e-02	ci left: 5.526098e-01	ci right 5.721538e-01	k: 5624	n:10000
KS ci ratio: 4.648497e-02	ci left: 4.058169e-01	ci right 4.252323e-01	k: 4155	n:10000
VPS4B   10000 perm   2 sec   (6600 perm/sec)   p_kst 4.155000e-01   p_cons 5.624000e-01   p_joint 5.916000e-01

Outputting figure to mutsig2_images.part000000000189/VPS4B.2_1379_10000_0.4155_0.5624_0.5916.png
                gene_name: VPS4B
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 90 percent done.
VPS53
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.214301e-02	ci left: 7.495823e-01	ci right 7.664671e-01	k: 7581	n:10000
Cons ci ratio: 2.700042e-02	ci left: 6.689428e-01	ci right 6.873533e-01	k: 6782	n:10000
KS ci ratio: 4.952396e-02	ci left: 3.755471e-01	ci right 3.947199e-01	k: 3851	n:10000
VPS53   10000 perm   2 sec   (6110 perm/sec)   p_kst 3.851000e-01   p_cons 6.782000e-01   p_joint 7.581000e-01

Outputting figure to mutsig2_images.part000000000189/VPS53.2_2602_10000_0.3851_0.6782_0.7581.png
                gene_name: VPS53
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 92 percent done.
VPS54
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.856483e-03	ci left: 9.668882e-01	ci right 9.736342e-01	k: 9704	n:10000
Cons ci ratio: 2.504549e-02	ci left: 7.010970e-01	ci right 7.189804e-01	k: 7101	n:10000
KS ci ratio: 3.235768e-02	ci left: 5.850011e-01	ci right 6.043437e-01	k: 5947	n:10000
VPS54   10000 perm   2 sec   (5634 perm/sec)   p_kst 5.947000e-01   p_cons 7.101000e-01   p_joint 9.704000e-01

Outputting figure to mutsig2_images.part000000000189/VPS54.2_3022_10000_0.5947_0.7101_0.9704.png
                gene_name: VPS54
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.97 

Current progress: 94 percent done.
VRK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.153199e-02	ci left: 5.974476e-01	ci right 6.166900e-01	k: 6071	n:10000
Cons ci ratio: 3.967515e-02	ci left: 4.840539e-01	ci right 5.037497e-01	k: 4939	n:10000
KS ci ratio: 5.091734e-03	ci left: 9.808076e-01	ci right 9.859052e-01	k: 9835	n:10000
VRK3   10000 perm   2 sec   (6338 perm/sec)   p_kst 9.835000e-01   p_cons 4.939000e-01   p_joint 6.071000e-01

Outputting figure to mutsig2_images.part000000000189/VRK3.2_1473_10000_0.9835_0.4939_0.6071.png
                gene_name: VRK3
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 96 percent done.
WAC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.169719e-02	ci left: 9.127588e-01	ci right 9.235961e-01	k: 9183	n:10000
Cons ci ratio: 4.665763e-02	ci left: 4.040236e-01	ci right 4.234267e-01	k: 4137	n:10000
KS ci ratio: 2.115807e-02	ci left: 7.660785e-01	ci right 7.825614e-01	k: 7744	n:10000
WAC   10000 perm   2 sec   (6196 perm/sec)   p_kst 7.744000e-01   p_cons 4.137000e-01   p_joint 9.183000e-01

Outputting figure to mutsig2_images.part000000000189/WAC.2_2000_10000_0.7744_0.4137_0.9183.png
                gene_name: WAC
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 98 percent done.
WARS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.699584e-02	ci left: 4.005369e-01	ci right 4.199155e-01	k: 4102	n:10000
Cons ci ratio: 6.844577e-03	ci left: 9.669936e-01	ci right 9.737287e-01	k: 9705	n:10000
KS ci ratio: 7.088296e-02	ci left: 2.258292e-01	ci right 2.425259e-01	k: 2341	n:10000
WARS2   10000 perm   2 sec   (6374 perm/sec)   p_kst 2.341000e-01   p_cons 9.705000e-01   p_joint 4.102000e-01

Outputting figure to mutsig2_images.part000000000189/WARS2.2_1136_10000_0.2341_0.9705_0.4102.png
                gene_name: WARS2
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000189
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 189 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1538>
Subject: Job 8004692: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1538>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000190> was used as the working directory.
Started at Sun Nov 11 15:25:29 2012
Results reported at Sun Nov 11 15:44:20 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000190.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000190.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 190  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000190.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1336.34 sec.
    Max Memory :      4669 MB
    Max Swap   :      7135 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
190
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 190
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 190: processing genes 17100 - 17189
Calculating significance of each gene.
Using projection method.
17100	WASL	6.364215e-01
17101	WBP1	1
17102	WBP11	1
17103	WBP2	1
17104	WBP2NL	1
17105	WBP4	1
17106	WBP5	1
17107	WBSCR16	1
17108	WBSCR17	5.887766e-01
17109	WBSCR22	1.068656e-01
17110	WBSCR27	1
17111	WBSCR28	7.241973e-01
17112	WDFY1	6.214694e-01
17113	WDFY2	8.665872e-01
17114	WDFY3	9.999847e-01
17115	WDHD1	5.294945e-01
17116	WDR1	4.473370e-01
17117	WDR11	8.599119e-01
17118	WDR12	2.956670e-01
17119	WDR13	7.799342e-01
17120	WDR16	1
17121	WDR17	3.191968e-01
17122	WDR18	1
17123	WDR19	9.115533e-01
17124	WDR20	1
17125	WDR24	8.774351e-01
17126	WDR25	6.507226e-01
17127	WDR26	4.714061e-01
17128	WDR27	6.679557e-01
17129	WDR3	7.887213e-01
17130	WDR31	1
17131	WDR33	5.331576e-01
17132	WDR34	5.067541e-01
17133	WDR35	1
17134	WDR36	6.045790e-01
17135	WDR37	1
17136	WDR38	7.444428e-01
17137	WDR4	4.408383e-01
17138	WDR41	4.193043e-01
17139	WDR43	8.232579e-02
17140	WDR44	3.360074e-01
17141	WDR45	2.213702e-01
17142	WDR45L	1
17143	WDR46	4.122524e-01
17144	WDR47	8.089183e-01
17145	WDR48	8.794141e-01
17146	WDR49	3.358102e-01
17147	WDR5	1
17148	WDR52	7.248795e-02
17149	WDR53	6.566327e-01
17150	WDR54	2.741544e-01
17151	WDR55	6.250297e-01
17152	WDR59	8.572834e-01
17153	WDR5B	6.005272e-01
17154	WDR6	9.126102e-01
17155	WDR60	8.207133e-01
17156	WDR61	1
17157	WDR62	8.596615e-01
17158	WDR63	5.427268e-01
17159	WDR64	3.342208e-02
17160	WDR65	9.166657e-01
17161	WDR66	2.562749e-01
17162	WDR67	2.056333e-01
17163	WDR69	2.909899e-01
17164	WDR7	6.880045e-01
17165	WDR70	3.377057e-01
17166	WDR72	6.889129e-01
17167	WDR73	1
17168	WDR74	1
17169	WDR75	4.813999e-01
17170	WDR76	7.433302e-01
17171	WDR77	1
17172	WDR78	6.235335e-01
17173	WDR8	6.849421e-01
17174	WDR81	9.784650e-01
17175	WDR82	4.462969e-01
17176	WDR83	1
17177	WDR85	5.659178e-01
17178	WDR86	2.214213e-01
17179	WDR88	3.949080e-02
17180	WDR89	1
17181	WDR90	6.218720e-01
17182	WDR91	2.241186e-01
17183	WDR92	7.047084e-01
17184	WDR93	2.044325e-01
17185	WDSUB1	1
17186	WDTC1	8.618102e-01
17187	WDYHV1	1.371593e-01
17188	WEE1	7.545661e-02
17189	WEE2	1.266177e-01
Done

Running MutSig 2:
Scatter job 190: processing genes 17100 - 17189
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
WDR17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.651309e-02	ci left: 6.769010e-01	ci right 6.951905e-01	k: 6861	n:10000
Cons ci ratio: 5.965125e-02	ci left: 2.925144e-01	ci right 3.106013e-01	k: 3015	n:10000
KS ci ratio: 2.421431e-02	ci left: 7.149223e-01	ci right 7.325471e-01	k: 7238	n:10000
WDR17   10000 perm   3 sec   (3467 perm/sec)   p_kst 7.238000e-01   p_cons 3.015000e-01   p_joint 6.861000e-01

Outputting figure to mutsig2_images.part000000000190/WDR17.20_4089_10000_0.7238_0.3015_0.6861.png
                gene_name: WDR17
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 2 percent done.
WDR72
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.082601e-03	ci left: 9.552412e-01	ci right 9.630885e-01	k: 9593	n:10000
KS ci ratio: 1.393891e-02	ci left: 8.814508e-01	ci right 8.939223e-01	k: 8878	n:10000
WDR72   10000 perm   3 sec   (3745 perm/sec)   p_kst 8.878000e-01   p_cons 9.593000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000190/WDR72.12_3385_10000_0.8878_0.9593_1.png
                gene_name: WDR72
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 4 percent done.
WBSCR17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.236972e-02	ci left: 9.037070e-01	ci right 9.150532e-01	k: 9095	n:10000
KS ci ratio: 8.427585e-03	ci left: 9.516910e-01	ci right 9.598408e-01	k: 9559	n:10000
WBSCR17   10000 perm   2 sec   (4685 perm/sec)   p_kst 9.559000e-01   p_cons 9.095000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000190/WBSCR17.11_1841_10000_0.9559_0.9095_1.png
                gene_name: WBSCR17
               theta_stop: 0.012 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 6 percent done.
WDFY3
Processing conservation and coverage...
91% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.243716e-02	ci left: 9.027822e-01	ci right 9.141786e-01	k: 9086	n:10000
Cons ci ratio: 1.412003e-02	ci left: 8.787895e-01	ci right 8.913852e-01	k: 8852	n:10000
KS ci ratio: 1.602146e-02	ci left: 8.498828e-01	ci right 8.637086e-01	k: 8569	n:10000
WDFY3   10000 perm   4 sec   (2443 perm/sec)   p_kst 8.569000e-01   p_cons 8.852000e-01   p_joint 9.086000e-01

Outputting figure to mutsig2_images.part000000000190/WDFY3.9_10884_10000_0.8569_0.8852_0.9086.png
                gene_name: WDFY3
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 7 percent done.
WDR7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.142599e-01	ci left: 9.925222e-02	ci right 1.113788e-01	k: 1052	n:10000
Cons ci ratio: 1.835874e-01	ci left: 3.958555e-02	ci right 4.768301e-02	k: 435	n:10000
KS ci ratio: 7.090273e-02	ci left: 2.257305e-01	ci right 2.424247e-01	k: 2340	n:10000
WDR7   10000 perm   3 sec   (3911 perm/sec)   p_kst 2.340000e-01   p_cons 4.350000e-02   p_joint 1.052000e-01

Joint ci ratio: 1.115012e-01	ci left: 5.494603e-02	ci right 6.148315e-02	k: 1163	n:20000
Cons ci ratio: 1.265168e-01	ci left: 4.289548e-02	ci right 4.873749e-02	k: 915	n:20000
KS ci ratio: 5.083838e-02	ci left: 2.232904e-01	ci right 2.349885e-01	k: 4582	n:20000
WDR7   20000 perm   6 sec   (3586 perm/sec)   p_kst 2.291000e-01   p_cons 4.575000e-02   p_joint 5.815000e-02

Joint ci ratio: 9.043755e-02	ci left: 5.626197e-02	ci right 6.162384e-02	k: 1767	n:30000
Cons ci ratio: 1.027151e-01	ci left: 4.391700e-02	ci right 4.870469e-02	k: 1388	n:30000
KS ci ratio: 4.200718e-02	ci left: 2.202187e-01	ci right 2.297013e-01	k: 6748	n:30000
WDR7   30000 perm   9 sec   (3466 perm/sec)   p_kst 2.249333e-01   p_cons 4.626667e-02   p_joint 5.890000e-02

Joint ci ratio: 7.191098e-02	ci left: 6.665796e-02	ci right 7.165481e-02	k: 2765	n:40000
Cons ci ratio: 8.959010e-02	ci left: 4.362508e-02	ci right 4.774120e-02	k: 1826	n:40000
KS ci ratio: 3.640980e-02	ci left: 2.205676e-01	ci right 2.287724e-01	k: 8986	n:40000
WDR7   40000 perm   12 sec   (3396 perm/sec)   p_kst 2.246500e-01   p_cons 4.565000e-02   p_joint 6.912500e-02

Outputting figure to mutsig2_images.part000000000190/WDR7.9_4581_40000_0.22465_0.04565_0.069125.png
                gene_name: WDR7
               theta_stop: 0.090 
                    nperm: 40000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.046 
      ci_cons_bounds_left: 0.044 
     ci_cons_bounds_right: 0.048 
                  p_joint: 0.069 
     ci_joint_bounds_left: 0.067 
    ci_joint_bounds_right: 0.072 

Current progress: 9 percent done.
WDR49
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.081572e-01	ci left: 1.097862e-01	ci right 1.224384e-01	k: 1160	n:10000
Cons ci ratio: 9.909574e-02	ci left: 1.285551e-01	ci right 1.420581e-01	k: 1352	n:10000
KS ci ratio: 1.500300e-01	ci left: 5.908749e-02	ci right 6.876845e-02	k: 638	n:10000
WDR49   10000 perm   2 sec   (4760 perm/sec)   p_kst 6.380000e-02   p_cons 1.352000e-01   p_joint 1.160000e-01

Joint ci ratio: 8.333946e-02	ci left: 9.543404e-02	ci right 1.037828e-01	k: 1991	n:20000
Cons ci ratio: 6.987848e-02	ci left: 1.311789e-01	ci right 1.407272e-01	k: 2718	n:20000
KS ci ratio: 1.042287e-01	ci left: 6.259732e-02	ci right 6.952949e-02	k: 1320	n:20000
WDR49   20000 perm   5 sec   (4370 perm/sec)   p_kst 6.600000e-02   p_cons 1.359000e-01   p_joint 9.955000e-02

Joint ci ratio: 8.082808e-02	ci left: 6.975402e-02	ci right 7.566239e-02	k: 2180	n:30000
Cons ci ratio: 5.673031e-02	ci left: 1.333911e-01	ci right 1.412126e-01	k: 4118	n:30000
KS ci ratio: 8.574176e-02	ci left: 6.233390e-02	ci right 6.795067e-02	k: 1953	n:30000
WDR49   30000 perm   7 sec   (4201 perm/sec)   p_kst 6.510000e-02   p_cons 1.372667e-01   p_joint 7.266667e-02

Outputting figure to mutsig2_images.part000000000190/WDR49.8_2150_30000_0.0651_0.13727_0.072667.png
                gene_name: WDR49
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.065 
        ci_ks_bounds_left: 0.062 
       ci_ks_bounds_right: 0.068 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.073 
     ci_joint_bounds_left: 0.070 
    ci_joint_bounds_right: 0.076 

Current progress: 11 percent done.
WDR52
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.103695e-01	ci left: 1.326304e-02	ci right 1.822489e-02	k: 156	n:10000
Cons ci ratio: 1.763111e-01	ci left: 4.293441e-02	ci right 5.133194e-02	k: 470	n:10000
KS ci ratio: 4.233520e-01	ci left: 6.705543e-03	ci right 1.038936e-02	k: 84	n:10000
WDR52   10000 perm   3 sec   (3602 perm/sec)   p_kst 8.400000e-03   p_cons 4.700000e-02   p_joint 1.560000e-02

Joint ci ratio: 3.400560e-01	ci left: 5.479249e-03	ci right 7.767742e-03	k: 131	n:20000
Cons ci ratio: 1.230376e-01	ci left: 4.532094e-02	ci right 5.131125e-02	k: 965	n:20000
KS ci ratio: 3.221178e-01	ci left: 6.167283e-03	ci right 8.579269e-03	k: 146	n:20000
WDR52   20000 perm   6 sec   (3306 perm/sec)   p_kst 7.300000e-03   p_cons 4.825000e-02   p_joint 6.550000e-03

Joint ci ratio: 3.586265e-01	ci left: 3.256774e-03	ci right 4.708553e-03	k: 118	n:30000
Cons ci ratio: 1.044213e-01	ci left: 4.251916e-02	ci right 4.723615e-02	k: 1345	n:30000
KS ci ratio: 2.695528e-01	ci left: 6.056795e-03	ci right 7.973879e-03	k: 209	n:30000
WDR52   30000 perm   9 sec   (3169 perm/sec)   p_kst 6.966667e-03   p_cons 4.483333e-02   p_joint 3.933333e-03

Joint ci ratio: 3.445755e-01	ci left: 2.670359e-03	ci right 3.803659e-03	k: 128	n:40000
Cons ci ratio: 9.074104e-02	ci left: 4.254879e-02	ci right 4.661766e-02	k: 1782	n:40000
KS ci ratio: 2.409186e-01	ci left: 5.782973e-03	ci right 7.389919e-03	k: 262	n:40000
WDR52   40000 perm   13 sec   (3069 perm/sec)   p_kst 6.550000e-03   p_cons 4.455000e-02   p_joint 3.200000e-03

Joint ci ratio: 3.530160e-01	ci left: 2.026672e-03	ci right 2.912674e-03	k: 122	n:50000
Cons ci ratio: 8.144392e-02	ci left: 4.247374e-02	ci right 4.609941e-02	k: 2213	n:50000
KS ci ratio: 2.154023e-01	ci left: 5.871172e-03	ci right 7.307016e-03	k: 328	n:50000
WDR52   50000 perm   17 sec   (3005 perm/sec)   p_kst 6.560000e-03   p_cons 4.426000e-02   p_joint 2.440000e-03

Joint ci ratio: 3.447627e-01	ci left: 1.780089e-03	ci right 2.536029e-03	k: 128	n:60000
Cons ci ratio: 7.450649e-02	ci left: 4.245453e-02	ci right 4.575641e-02	k: 2645	n:60000
KS ci ratio: 1.988783e-01	ci left: 5.793406e-03	ci right 7.088364e-03	k: 385	n:60000
WDR52   60000 perm   20 sec   (2946 perm/sec)   p_kst 6.416667e-03   p_cons 4.408333e-02   p_joint 2.133333e-03

Joint ci ratio: 1.902452e-01	ci left: 5.454925e-03	ci right 6.615166e-03	k: 421	n:70000
Cons ci ratio: 6.546281e-02	ci left: 4.713116e-02	ci right 5.033495e-02	k: 3410	n:70000
KS ci ratio: 1.827690e-01	ci left: 5.931717e-03	ci right 7.138307e-03	k: 456	n:70000
WDR52   70000 perm   24 sec   (2883 perm/sec)   p_kst 6.514286e-03   p_cons 4.871429e-02   p_joint 6.014286e-03

Joint ci ratio: 1.828442e-01	ci left: 5.190067e-03	ci right 6.246264e-03	k: 456	n:80000
Cons ci ratio: 6.137809e-02	ci left: 4.702154e-02	ci right 5.001131e-02	k: 3880	n:80000
KS ci ratio: 1.725154e-01	ci left: 5.859126e-03	ci right 6.977122e-03	k: 512	n:80000
WDR52   80000 perm   28 sec   (2828 perm/sec)   p_kst 6.400000e-03   p_cons 4.850000e-02   p_joint 5.700000e-03

Joint ci ratio: 1.467412e-01	ci left: 7.289136e-03	ci right 8.454030e-03	k: 707	n:90000
Cons ci ratio: 5.783393e-02	ci left: 4.716034e-02	ci right 4.997996e-02	k: 4370	n:90000
KS ci ratio: 1.612663e-01	ci left: 5.996056e-03	ci right 7.058349e-03	k: 586	n:90000
WDR52   90000 perm   32 sec   (2792 perm/sec)   p_kst 6.511111e-03   p_cons 4.855556e-02   p_joint 7.855556e-03

Joint ci ratio: 1.499235e-01	ci left: 6.280736e-03	ci right 7.308184e-03	k: 678	n:100000
Cons ci ratio: 5.488195e-02	ci left: 4.720627e-02	ci right 4.987999e-02	k: 4853	n:100000
KS ci ratio: 1.532538e-01	ci left: 6.001670e-03	ci right 7.007276e-03	k: 649	n:100000
WDR52   100000 perm   36 sec   (2757 perm/sec)   p_kst 6.490000e-03   p_cons 4.853000e-02   p_joint 6.780000e-03

Joint ci ratio: 1.448027e-01	ci left: 6.138759e-03	ci right 7.105712e-03	k: 727	n:110000
Cons ci ratio: 5.210979e-02	ci left: 4.765088e-02	ci right 5.020934e-02	k: 5381	n:110000
KS ci ratio: 1.452048e-01	ci left: 6.103707e-03	ci right 7.068039e-03	k: 723	n:110000
WDR52   110000 perm   40 sec   (2721 perm/sec)   p_kst 6.572727e-03   p_cons 4.891818e-02   p_joint 6.609091e-03

Joint ci ratio: 1.409046e-01	ci left: 5.956611e-03	ci right 6.867489e-03	k: 768	n:120000
Cons ci ratio: 5.007217e-02	ci left: 4.737366e-02	ci right 4.981488e-02	k: 5830	n:120000
KS ci ratio: 1.395413e-01	ci left: 6.077252e-03	ci right 6.996840e-03	k: 783	n:120000
WDR52   120000 perm   45 sec   (2688 perm/sec)   p_kst 6.525000e-03   p_cons 4.858333e-02   p_joint 6.400000e-03

Joint ci ratio: 1.432050e-01	ci left: 5.320230e-03	ci right 6.148205e-03	k: 744	n:130000
Cons ci ratio: 4.807947e-02	ci left: 4.747536e-02	ci right 4.982175e-02	k: 6323	n:130000
KS ci ratio: 1.349765e-01	ci left: 6.010878e-03	ci right 6.888278e-03	k: 837	n:130000
WDR52   130000 perm   49 sec   (2656 perm/sec)   p_kst 6.438462e-03   p_cons 4.863846e-02   p_joint 5.723077e-03

Joint ci ratio: 1.352516e-01	ci left: 5.560738e-03	ci right 6.374214e-03	k: 834	n:140000
Cons ci ratio: 4.638233e-02	ci left: 4.741583e-02	ci right 4.967434e-02	k: 6795	n:140000
KS ci ratio: 1.312771e-01	ci left: 5.912949e-03	ci right 6.750552e-03	k: 885	n:140000
WDR52   140000 perm   53 sec   (2630 perm/sec)   p_kst 6.321429e-03   p_cons 4.853571e-02   p_joint 5.957143e-03

Joint ci ratio: 1.503170e-01	ci left: 4.173980e-03	ci right 4.858723e-03	k: 676	n:150000
Cons ci ratio: 4.467893e-02	ci left: 4.772169e-02	ci right 4.990913e-02	k: 7321	n:150000
KS ci ratio: 1.277971e-01	ci left: 5.834818e-03	ci right 6.637781e-03	k: 934	n:150000
WDR52   150000 perm   58 sec   (2601 perm/sec)   p_kst 6.226667e-03   p_cons 4.880667e-02   p_joint 4.506667e-03

Joint ci ratio: 1.564930e-01	ci left: 3.600492e-03	ci right 4.217698e-03	k: 624	n:160000
Cons ci ratio: 4.208139e-02	ci left: 5.036018e-02	ci right 5.253111e-02	k: 8230	n:160000
KS ci ratio: 1.233250e-01	ci left: 5.887859e-03	ci right 6.667695e-03	k: 1003	n:160000
WDR52   160000 perm   62 sec   (2576 perm/sec)   p_kst 6.268750e-03   p_cons 5.143750e-02   p_joint 3.900000e-03

Joint ci ratio: 1.665747e-01	ci left: 2.976547e-03	ci right 3.522964e-03	k: 551	n:170000
Cons ci ratio: 4.080144e-02	ci left: 5.044827e-02	ci right 5.255530e-02	k: 8754	n:170000
KS ci ratio: 1.193476e-01	ci left: 5.929382e-03	ci right 6.687602e-03	k: 1071	n:170000
WDR52   170000 perm   67 sec   (2548 perm/sec)   p_kst 6.300000e-03   p_cons 5.149412e-02   p_joint 3.241176e-03

Joint ci ratio: 1.664386e-01	ci left: 2.816488e-03	ci right 3.333056e-03	k: 552	n:180000
Cons ci ratio: 3.967671e-02	ci left: 5.041739e-02	ci right 5.246375e-02	k: 9258	n:180000
KS ci ratio: 1.160395e-01	ci left: 5.934277e-03	ci right 6.670648e-03	k: 1133	n:180000
WDR52   180000 perm   71 sec   (2521 perm/sec)   p_kst 6.294444e-03   p_cons 5.143333e-02   p_joint 3.066667e-03

Joint ci ratio: 1.649629e-01	ci left: 2.718689e-03	ci right 3.212459e-03	k: 562	n:190000
Cons ci ratio: 3.856731e-02	ci left: 5.057301e-02	ci right 5.256702e-02	k: 9797	n:190000
KS ci ratio: 1.122857e-01	ci left: 6.015653e-03	ci right 6.736374e-03	k: 1210	n:190000
WDR52   190000 perm   76 sec   (2490 perm/sec)   p_kst 6.368421e-03   p_cons 5.156316e-02   p_joint 2.957895e-03

Joint ci ratio: 1.400842e-01	ci left: 3.626726e-03	ci right 4.177806e-03	k: 779	n:200000
Cons ci ratio: 3.752117e-02	ci left: 5.077820e-02	ci right 5.272482e-02	k: 10349	n:200000
KS ci ratio: 1.108847e-01	ci left: 5.865519e-03	ci right 6.558910e-03	k: 1241	n:200000
WDR52   200000 perm   81 sec   (2459 perm/sec)   p_kst 6.205000e-03   p_cons 5.174500e-02   p_joint 3.895000e-03

Joint ci ratio: 1.317155e-01	ci left: 3.923278e-03	ci right 4.481021e-03	k: 881	n:210000
Cons ci ratio: 3.663202e-02	ci left: 5.076152e-02	ci right 5.266040e-02	k: 10858	n:210000
KS ci ratio: 1.083001e-01	ci left: 5.864091e-03	ci right 6.540125e-03	k: 1301	n:210000
WDR52   210000 perm   86 sec   (2430 perm/sec)   p_kst 6.195238e-03   p_cons 5.170476e-02   p_joint 4.195238e-03

Joint ci ratio: 1.287571e-01	ci left: 3.925239e-03	ci right 4.469770e-03	k: 922	n:220000
Cons ci ratio: 3.581154e-02	ci left: 5.072431e-02	ci right 5.257843e-02	k: 11362	n:220000
KS ci ratio: 1.053449e-01	ci left: 5.924928e-03	ci right 6.588182e-03	k: 1375	n:220000
WDR52   220000 perm   92 sec   (2402 perm/sec)   p_kst 6.250000e-03   p_cons 5.164545e-02   p_joint 4.190909e-03

Joint ci ratio: 1.256627e-01	ci left: 3.948215e-03	ci right 4.481790e-03	k: 968	n:230000
Cons ci ratio: 3.505317e-02	ci left: 5.066491e-02	ci right 5.247685e-02	k: 11860	n:230000
KS ci ratio: 1.027617e-01	ci left: 5.963756e-03	ci right 6.613998e-03	k: 1445	n:230000
WDR52   230000 perm   97 sec   (2376 perm/sec)   p_kst 6.282609e-03   p_cons 5.156522e-02   p_joint 4.208696e-03

Joint ci ratio: 1.236404e-01	ci left: 3.912877e-03	ci right 4.432543e-03	k: 1000	n:240000
Cons ci ratio: 3.431030e-02	ci left: 5.069763e-02	ci right 5.247155e-02	k: 12379	n:240000
KS ci ratio: 1.008970e-01	ci left: 5.934531e-03	ci right 6.569148e-03	k: 1499	n:240000
WDR52   240000 perm   102 sec   (2352 perm/sec)   p_kst 6.245833e-03   p_cons 5.157917e-02   p_joint 4.166667e-03

Joint ci ratio: 1.220692e-01	ci left: 3.857159e-03	ci right 4.362444e-03	k: 1026	n:250000
Cons ci ratio: 3.361824e-02	ci left: 5.071223e-02	ci right 5.245018e-02	k: 12894	n:250000
KS ci ratio: 9.916225e-02	ci left: 5.903841e-03	ci right 6.523690e-03	k: 1552	n:250000
WDR52   250000 perm   107 sec   (2330 perm/sec)   p_kst 6.208000e-03   p_cons 5.157600e-02   p_joint 4.104000e-03

Joint ci ratio: 1.193112e-01	ci left: 3.887853e-03	ci right 4.384839e-03	k: 1074	n:260000
Cons ci ratio: 3.290697e-02	ci left: 5.090159e-02	ci right 5.260842e-02	k: 13455	n:260000
KS ci ratio: 9.724022e-02	ci left: 5.909376e-03	ci right 6.517095e-03	k: 1614	n:260000
WDR52   260000 perm   113 sec   (2307 perm/sec)   p_kst 6.207692e-03   p_cons 5.175000e-02   p_joint 4.130769e-03

Joint ci ratio: 1.194320e-01	ci left: 3.736654e-03	ci right 4.214830e-03	k: 1072	n:270000
Cons ci ratio: 3.232055e-02	ci left: 5.083102e-02	ci right 5.250454e-02	k: 13949	n:270000
KS ci ratio: 9.514078e-02	ci left: 5.950768e-03	ci right 6.548794e-03	k: 1686	n:270000
WDR52   270000 perm   118 sec   (2285 perm/sec)   p_kst 6.244444e-03   p_cons 5.166296e-02   p_joint 3.970370e-03

Joint ci ratio: 1.227578e-01	ci left: 3.405761e-03	ci right 3.854610e-03	k: 1015	n:280000
Cons ci ratio: 3.172505e-02	ci left: 5.088626e-02	ci right 5.253017e-02	k: 14477	n:280000
KS ci ratio: 9.317168e-02	ci left: 5.989334e-03	ci right 6.578098e-03	k: 1758	n:280000
WDR52   280000 perm   124 sec   (2261 perm/sec)   p_kst 6.278571e-03   p_cons 5.170357e-02   p_joint 3.625000e-03

Joint ci ratio: 1.219848e-01	ci left: 3.331768e-03	ci right 3.767901e-03	k: 1028	n:290000
Cons ci ratio: 3.118541e-02	ci left: 5.086266e-02	ci right 5.247735e-02	k: 14983	n:290000
KS ci ratio: 9.144571e-02	ci left: 6.008509e-03	ci right 6.587631e-03	k: 1825	n:290000
WDR52   290000 perm   130 sec   (2235 perm/sec)   p_kst 6.293103e-03   p_cons 5.166552e-02   p_joint 3.544828e-03

Joint ci ratio: 1.202457e-01	ci left: 3.317678e-03	ci right 3.745334e-03	k: 1058	n:300000
Cons ci ratio: 3.065676e-02	ci left: 5.089048e-02	ci right 5.247819e-02	k: 15504	n:300000
KS ci ratio: 9.002786e-02	ci left: 5.997170e-03	ci right 6.565765e-03	k: 1883	n:300000
WDR52   300000 perm   136 sec   (2212 perm/sec)   p_kst 6.276667e-03   p_cons 5.168000e-02   p_joint 3.526667e-03

Joint ci ratio: 1.186335e-01	ci left: 3.301408e-03	ci right 3.720861e-03	k: 1087	n:310000
Cons ci ratio: 3.016999e-02	ci left: 5.086549e-02	ci right 5.242678e-02	k: 16009	n:310000
KS ci ratio: 8.860513e-02	ci left: 5.996091e-03	ci right 6.555135e-03	k: 1944	n:310000
WDR52   310000 perm   141 sec   (2193 perm/sec)   p_kst 6.270968e-03   p_cons 5.164194e-02   p_joint 3.506452e-03

Joint ci ratio: 1.224838e-01	ci left: 2.995147e-03	ci right 3.388935e-03	k: 1020	n:320000
Cons ci ratio: 2.969149e-02	ci left: 5.088878e-02	ci right 5.242560e-02	k: 16529	n:320000
KS ci ratio: 8.724778e-02	ci left: 5.995146e-03	ci right 6.545103e-03	k: 2005	n:320000
WDR52   320000 perm   147 sec   (2173 perm/sec)   p_kst 6.265625e-03   p_cons 5.165313e-02   p_joint 3.187500e-03

Joint ci ratio: 1.262013e-01	ci left: 2.731134e-03	ci right 3.101923e-03	k: 961	n:330000
Cons ci ratio: 2.925767e-02	ci left: 5.083562e-02	ci right 5.234802e-02	k: 17024	n:330000
KS ci ratio: 8.580488e-02	ci left: 6.015080e-03	ci right 6.557282e-03	k: 2073	n:330000
WDR52   330000 perm   153 sec   (2155 perm/sec)   p_kst 6.281818e-03   p_cons 5.158788e-02   p_joint 2.912121e-03

Joint ci ratio: 1.264707e-01	ci left: 2.639405e-03	ci right 2.998563e-03	k: 957	n:340000
Cons ci ratio: 2.883713e-02	ci left: 5.080327e-02	ci right 5.229262e-02	k: 17525	n:340000
KS ci ratio: 8.451072e-02	ci left: 6.022393e-03	ci right 6.556663e-03	k: 2137	n:340000
WDR52   340000 perm   159 sec   (2136 perm/sec)   p_kst 6.285294e-03   p_cons 5.154412e-02   p_joint 2.814706e-03

Joint ci ratio: 1.240329e-01	ci left: 2.669166e-03	ci right 3.024859e-03	k: 995	n:350000
Cons ci ratio: 2.840349e-02	ci left: 5.087792e-02	ci right 5.234666e-02	k: 18063	n:350000
KS ci ratio: 8.356029e-02	ci left: 5.987378e-03	ci right 6.512276e-03	k: 2186	n:350000
WDR52   350000 perm   165 sec   (2117 perm/sec)   p_kst 6.245714e-03   p_cons 5.160857e-02   p_joint 2.842857e-03

Joint ci ratio: 1.225658e-01	ci left: 2.659632e-03	ci right 3.009558e-03	k: 1019	n:360000
Cons ci ratio: 2.797774e-02	ci left: 5.098721e-02	ci right 5.243669e-02	k: 18615	n:360000
KS ci ratio: 8.238209e-02	ci left: 5.992431e-03	ci right 6.510009e-03	k: 2249	n:360000
WDR52   360000 perm   172 sec   (2098 perm/sec)   p_kst 6.247222e-03   p_cons 5.170833e-02   p_joint 2.830556e-03

Joint ci ratio: 1.221509e-01	ci left: 2.606086e-03	ci right 2.947721e-03	k: 1026	n:370000
Cons ci ratio: 2.761391e-02	ci left: 5.093769e-02	ci right 5.236664e-02	k: 19110	n:370000
KS ci ratio: 8.121703e-02	ci left: 6.002557e-03	ci right 6.513330e-03	k: 2314	n:370000
WDR52   370000 perm   178 sec   (2080 perm/sec)   p_kst 6.254054e-03   p_cons 5.164865e-02   p_joint 2.772973e-03

Joint ci ratio: 1.216222e-01	ci left: 2.560463e-03	ci right 2.894560e-03	k: 1035	n:380000
Cons ci ratio: 2.724779e-02	ci left: 5.094842e-02	ci right 5.235842e-02	k: 19627	n:380000
KS ci ratio: 8.015089e-02	ci left: 6.004461e-03	ci right 6.508376e-03	k: 2376	n:380000
WDR52   380000 perm   184 sec   (2062 perm/sec)   p_kst 6.252632e-03   p_cons 5.165000e-02   p_joint 2.723684e-03

Joint ci ratio: 1.077935e-01	ci left: 3.197268e-03	ci right 3.564018e-03	k: 1317	n:390000
Cons ci ratio: 2.690079e-02	ci left: 5.094089e-02	ci right 5.233245e-02	k: 20137	n:390000
KS ci ratio: 8.137170e-02	ci left: 5.674599e-03	ci right 6.158428e-03	k: 2306	n:390000
WDR52   390000 perm   191 sec   (2042 perm/sec)   p_kst 5.912821e-03   p_cons 5.163333e-02   p_joint 3.376923e-03

Joint ci ratio: 1.063900e-01	ci left: 3.202493e-03	ci right 3.564760e-03	k: 1352	n:400000
Cons ci ratio: 2.657146e-02	ci left: 5.091645e-02	ci right 5.229005e-02	k: 20640	n:400000
KS ci ratio: 8.036783e-02	ci left: 5.674801e-03	ci right 6.152399e-03	k: 2364	n:400000
WDR52   400000 perm   198 sec   (2019 perm/sec)   p_kst 5.910000e-03   p_cons 5.160000e-02   p_joint 3.380000e-03

Joint ci ratio: 1.061585e-01	ci left: 3.138623e-03	ci right 3.492844e-03	k: 1358	n:410000
Cons ci ratio: 2.624674e-02	ci left: 5.091997e-02	ci right 5.227662e-02	k: 21154	n:410000
KS ci ratio: 7.940023e-02	ci left: 5.675029e-03	ci right 6.146629e-03	k: 2422	n:410000
WDR52   410000 perm   205 sec   (1998 perm/sec)   p_kst 5.907317e-03   p_cons 5.159512e-02   p_joint 3.312195e-03

Joint ci ratio: 1.050062e-01	ci left: 3.133436e-03	ci right 3.482996e-03	k: 1388	n:420000
Cons ci ratio: 2.594817e-02	ci left: 5.086899e-02	ci right 5.220864e-02	k: 21645	n:420000
KS ci ratio: 7.854641e-02	ci left: 5.663606e-03	ci right 6.128964e-03	k: 2475	n:420000
WDR52   420000 perm   212 sec   (1979 perm/sec)   p_kst 5.892857e-03   p_cons 5.153571e-02   p_joint 3.304762e-03

Joint ci ratio: 9.809470e-02	ci left: 3.518447e-03	ci right 3.883639e-03	k: 1590	n:430000
Cons ci ratio: 2.562114e-02	ci left: 5.096608e-02	ci right 5.229113e-02	k: 22199	n:430000
KS ci ratio: 7.773501e-02	ci left: 5.650460e-03	ci right 6.109725e-03	k: 2527	n:430000
WDR52   430000 perm   219 sec   (1960 perm/sec)   p_kst 5.876744e-03   p_cons 5.162558e-02   p_joint 3.697674e-03

Outputting figure to mutsig2_images.part000000000190/WDR52.8_5716_430000_0.0058767_0.051626_0.0036977.png
                gene_name: WDR52
               theta_stop: 0.098 
                    nperm: 430000 
                     p_ks: 0.0059 
        ci_ks_bounds_left: 0.0057 
       ci_ks_bounds_right: 0.0061 
                   p_cons: 0.052 
      ci_cons_bounds_left: 0.051 
     ci_cons_bounds_right: 0.052 
                  p_joint: 0.0037 
     ci_joint_bounds_left: 0.0035 
    ci_joint_bounds_right: 0.0039 

Current progress: 13 percent done.
WDR64
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.467453e-01	ci left: 6.169346e-02	ci right 7.156083e-02	k: 665	n:10000
Cons ci ratio: 1.152409e-01	ci left: 9.769325e-02	ci right 1.097387e-01	k: 1036	n:10000
KS ci ratio: 1.297800e-01	ci left: 7.814990e-02	ci right 8.909410e-02	k: 835	n:10000
WDR64   10000 perm   2 sec   (4213 perm/sec)   p_kst 8.350000e-02   p_cons 1.036000e-01   p_joint 6.650000e-02

Joint ci ratio: 8.728774e-02	ci left: 8.758778e-02	ci right 9.563141e-02	k: 1831	n:20000
Cons ci ratio: 7.852226e-02	ci left: 1.064325e-01	ci right 1.151810e-01	k: 2215	n:20000
KS ci ratio: 9.024730e-02	ci left: 8.229672e-02	ci right 9.012407e-02	k: 1723	n:20000
WDR64   20000 perm   5 sec   (3908 perm/sec)   p_kst 8.615000e-02   p_cons 1.107500e-01   p_joint 9.155000e-02

Outputting figure to mutsig2_images.part000000000190/WDR64.8_3354_20000_0.08615_0.11075_0.09155.png
                gene_name: WDR64
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.086 
        ci_ks_bounds_left: 0.082 
       ci_ks_bounds_right: 0.090 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.092 
     ci_joint_bounds_left: 0.088 
    ci_joint_bounds_right: 0.096 

Current progress: 15 percent done.
WDR33
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.023176e-02	ci left: 3.688810e-01	ci right 3.879899e-01	k: 3784	n:10000
Cons ci ratio: 1.615502e-01	ci left: 5.109258e-02	ci right 6.016847e-02	k: 555	n:10000
KS ci ratio: 1.104622e-02	ci left: 9.212101e-01	ci right 9.315399e-01	k: 9265	n:10000
WDR33   10000 perm   3 sec   (3700 perm/sec)   p_kst 9.265000e-01   p_cons 5.550000e-02   p_joint 3.784000e-01

Joint ci ratio: 3.904908e-02	ci left: 3.284580e-01	ci right 3.415900e-01	k: 6700	n:20000
Cons ci ratio: 1.155061e-01	ci left: 5.129666e-02	ci right 5.763366e-02	k: 1088	n:20000
KS ci ratio: 7.866153e-03	ci left: 9.217736e-01	ci right 9.291021e-01	k: 18510	n:20000
WDR33   20000 perm   6 sec   (3551 perm/sec)   p_kst 9.255000e-01   p_cons 5.440000e-02   p_joint 3.350000e-01

Joint ci ratio: 4.090202e-02	ci left: 2.295825e-01	ci right 2.392023e-01	k: 7031	n:30000
Cons ci ratio: 9.472568e-02	ci left: 5.143645e-02	ci right 5.658368e-02	k: 1619	n:30000
KS ci ratio: 6.419083e-03	ci left: 9.225385e-01	ci right 9.285121e-01	k: 27767	n:30000
WDR33   30000 perm   9 sec   (3477 perm/sec)   p_kst 9.255667e-01   p_cons 5.396667e-02   p_joint 2.343667e-01

Outputting figure to mutsig2_images.part000000000190/WDR33.7_4504_30000_0.92557_0.053967_0.23437.png
                gene_name: WDR33
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.054 
      ci_cons_bounds_left: 0.051 
     ci_cons_bounds_right: 0.057 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 17 percent done.
WDR60
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.015439e-02	ci left: 6.186415e-01	ci right 6.376837e-01	k: 6282	n:10000
KS ci ratio: 8.683729e-03	ci left: 9.489806e-01	ci right 9.573529e-01	k: 9533	n:10000
WDR60   10000 perm   2 sec   (4281 perm/sec)   p_kst 9.533000e-01   p_cons 6.282000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000190/WDR60.6_3301_10000_0.9533_0.6282_1.png
                gene_name: WDR60
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 19 percent done.
WDR66
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.510623e-02	ci left: 3.266419e-01	ci right 3.452538e-01	k: 3359	n:10000
Cons ci ratio: 8.667538e-02	ci left: 1.623899e-01	ci right 1.772030e-01	k: 1697	n:10000
KS ci ratio: 2.175058e-02	ci left: 7.561585e-01	ci right 7.728871e-01	k: 7646	n:10000
WDR66   10000 perm   2 sec   (4545 perm/sec)   p_kst 7.646000e-01   p_cons 1.697000e-01   p_joint 3.359000e-01

Outputting figure to mutsig2_images.part000000000190/WDR66.6_3593_10000_0.7646_0.1697_0.3359.png
                gene_name: WDR66
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 20 percent done.
WDR67
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.735992e-02	ci left: 1.963361e-01	ci right 2.122365e-01	k: 2042	n:10000
Cons ci ratio: 1.611275e-02	ci left: 8.484554e-01	ci right 8.623369e-01	k: 8555	n:10000
KS ci ratio: 1.013601e-01	ci left: 1.234670e-01	ci right 1.367493e-01	k: 1300	n:10000
WDR67   10000 perm   2 sec   (4848 perm/sec)   p_kst 1.300000e-01   p_cons 8.555000e-01   p_joint 2.042000e-01

Joint ci ratio: 4.959023e-02	ci left: 2.321114e-01	ci right 2.439648e-01	k: 4760	n:20000
Cons ci ratio: 1.074885e-02	ci left: 8.645498e-01	ci right 8.739426e-01	k: 17386	n:20000
KS ci ratio: 7.262314e-02	ci left: 1.225132e-01	ci right 1.317955e-01	k: 2542	n:20000
WDR67   20000 perm   5 sec   (4323 perm/sec)   p_kst 1.271000e-01   p_cons 8.693000e-01   p_joint 2.380000e-01

Outputting figure to mutsig2_images.part000000000190/WDR67.6_3289_20000_0.1271_0.8693_0.238.png
                gene_name: WDR67
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 22 percent done.
WDR90
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.896187e-02	ci left: 2.357064e-01	ci right 2.526429e-01	k: 2441	n:10000
Cons ci ratio: 9.138447e-02	ci left: 1.482523e-01	ci right 1.625490e-01	k: 1553	n:10000
KS ci ratio: 4.630365e-02	ci left: 4.077101e-01	ci right 4.271381e-01	k: 4174	n:10000
WDR90   10000 perm   3 sec   (3484 perm/sec)   p_kst 4.174000e-01   p_cons 1.553000e-01   p_joint 2.441000e-01

Outputting figure to mutsig2_images.part000000000190/WDR90.6_5411_10000_0.4174_0.1553_0.2441.png
                gene_name: WDR90
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 24 percent done.
WBP11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.969165e-02	ci left: 3.739550e-01	ci right 3.931129e-01	k: 3835	n:10000
Cons ci ratio: 3.705039e-02	ci left: 5.182587e-01	ci right 5.379249e-01	k: 5281	n:10000
KS ci ratio: 6.766072e-02	ci left: 2.427230e-01	ci right 2.598221e-01	k: 2512	n:10000
WBP11   10000 perm   2 sec   (5210 perm/sec)   p_kst 2.512000e-01   p_cons 5.281000e-01   p_joint 3.835000e-01

Outputting figure to mutsig2_images.part000000000190/WBP11.5_1970_10000_0.2512_0.5281_0.3835.png
                gene_name: WBP11
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 26 percent done.
WDHD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.017051e-02	ci left: 9.320594e-01	ci right 9.416842e-01	k: 9370	n:10000
KS ci ratio: 8.546586e-03	ci left: 9.504396e-01	ci right 9.586930e-01	k: 9547	n:10000
WDHD1   10000 perm   2 sec   (4468 perm/sec)   p_kst 9.547000e-01   p_cons 9.370000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000190/WDHD1.5_3490_10000_0.9547_0.937_1.png
                gene_name: WDHD1
               theta_stop: 0.010 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 28 percent done.
WDR11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.463711e-02	ci left: 5.517079e-01	ci right 5.712563e-01	k: 5615	n:10000
Cons ci ratio: 4.514284e-02	ci left: 4.200689e-01	ci right 4.395720e-01	k: 4298	n:10000
KS ci ratio: 3.780791e-02	ci left: 5.081525e-01	ci right 5.278370e-01	k: 5180	n:10000
WDR11   10000 perm   2 sec   (4589 perm/sec)   p_kst 5.180000e-01   p_cons 4.298000e-01   p_joint 5.615000e-01

Outputting figure to mutsig2_images.part000000000190/WDR11.5_3791_10000_0.518_0.4298_0.5615.png
                gene_name: WDR11
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 30 percent done.
WDR43
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.871639e-02	ci left: 1.294361e-01	ci right 1.429766e-01	k: 1361	n:10000
Cons ci ratio: 4.498665e-02	ci left: 4.217637e-01	ci right 4.412762e-01	k: 4315	n:10000
KS ci ratio: 1.389664e-01	ci left: 6.855690e-02	ci right 7.889307e-02	k: 736	n:10000
WDR43   10000 perm   2 sec   (5016 perm/sec)   p_kst 7.360000e-02   p_cons 4.315000e-01   p_joint 1.361000e-01

Joint ci ratio: 7.816569e-02	ci left: 1.073170e-01	ci right 1.160963e-01	k: 2233	n:20000
Cons ci ratio: 3.149429e-02	ci left: 4.295613e-01	ci right 4.433571e-01	k: 8729	n:20000
KS ci ratio: 9.640759e-02	ci left: 7.265752e-02	ci right 8.006620e-02	k: 1526	n:20000
WDR43   20000 perm   4 sec   (4550 perm/sec)   p_kst 7.630000e-02   p_cons 4.364500e-01   p_joint 1.116500e-01

Outputting figure to mutsig2_images.part000000000190/WDR43.5_2106_20000_0.0763_0.43645_0.11165.png
                gene_name: WDR43
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.076 
        ci_ks_bounds_left: 0.073 
       ci_ks_bounds_right: 0.080 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 31 percent done.
WDR88
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.167809e-02	ci left: 7.573729e-01	ci right 7.740721e-01	k: 7658	n:10000
Cons ci ratio: 6.292156e-02	ci left: 2.707198e-01	ci right 2.884088e-01	k: 2795	n:10000
KS ci ratio: 2.089762e-02	ci left: 7.704332e-01	ci right 7.868042e-01	k: 7787	n:10000
WDR88   10000 perm   2 sec   (5463 perm/sec)   p_kst 7.787000e-01   p_cons 2.795000e-01   p_joint 7.658000e-01

Outputting figure to mutsig2_images.part000000000190/WDR88.5_1463_10000_0.7787_0.2795_0.7658.png
                gene_name: WDR88
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 33 percent done.
WDR91
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.331842e-02	ci left: 2.140838e-01	ci right 2.304783e-01	k: 2222	n:10000
Cons ci ratio: 5.211988e-02	ci left: 3.517769e-01	ci right 3.707040e-01	k: 3612	n:10000
KS ci ratio: 6.359997e-02	ci left: 2.664630e-01	ci right 2.840681e-01	k: 2752	n:10000
WDR91   10000 perm   2 sec   (4666 perm/sec)   p_kst 2.752000e-01   p_cons 3.612000e-01   p_joint 2.222000e-01

Outputting figure to mutsig2_images.part000000000190/WDR91.5_2304_10000_0.2752_0.3612_0.2222.png
                gene_name: WDR91
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 35 percent done.
WDR93
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.669516e-02	ci left: 5.230630e-01	ci right 5.427178e-01	k: 5329	n:10000
Cons ci ratio: 2.090974e-02	ci left: 7.702306e-01	ci right 7.866069e-01	k: 7785	n:10000
KS ci ratio: 6.163475e-02	ci left: 2.790384e-01	ci right 2.968853e-01	k: 2879	n:10000
WDR93   10000 perm   2 sec   (5147 perm/sec)   p_kst 2.879000e-01   p_cons 7.785000e-01   p_joint 5.329000e-01

Outputting figure to mutsig2_images.part000000000190/WDR93.5_2125_10000_0.2879_0.7785_0.5329.png
                gene_name: WDR93
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 37 percent done.
WEE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.843563e-02	ci left: 8.112097e-01	ci right 8.264042e-01	k: 8189	n:10000
Cons ci ratio: 3.857979e-02	ci left: 4.980503e-01	ci right 5.177451e-01	k: 5079	n:10000
KS ci ratio: 2.202833e-02	ci left: 7.515043e-01	ci right 7.683440e-01	k: 7600	n:10000
WEE2   10000 perm   2 sec   (5330 perm/sec)   p_kst 7.600000e-01   p_cons 5.079000e-01   p_joint 8.189000e-01

Outputting figure to mutsig2_images.part000000000190/WEE2.5_1752_10000_0.76_0.5079_0.8189.png
                gene_name: WEE2
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 39 percent done.
WDR35
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.486767e-02	ci left: 4.230598e-01	ci right 4.425793e-01	k: 4328	n:10000
KS ci ratio: 1.445118e-02	ci left: 8.738790e-01	ci right 8.866985e-01	k: 8804	n:10000
WDR35   10000 perm   2 sec   (4972 perm/sec)   p_kst 8.804000e-01   p_cons 4.328000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000190/WDR35.4_3658_10000_0.8804_0.4328_1.png
                gene_name: WDR35
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 41 percent done.
WDR36
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.693080e-03	ci left: 9.938690e-01	ci right 9.966303e-01	k: 9954	n:10000
KS ci ratio: 4.669845e-03	ci left: 9.836084e-01	ci right 9.883022e-01	k: 9861	n:10000
WDR36   10000 perm   2 sec   (4833 perm/sec)   p_kst 9.861000e-01   p_cons 9.954000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000190/WDR36.4_2948_10000_0.9861_0.9954_1.png
                gene_name: WDR36
               theta_stop: 0.0047 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 1.00 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 1.00 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 43 percent done.
WDR44
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.338745e-02	ci left: 8.894412e-01	ci right 9.015273e-01	k: 8956	n:10000
KS ci ratio: 3.152538e-02	ci left: 5.975480e-01	ci right 6.167896e-01	k: 6072	n:10000
WDR44   10000 perm   2 sec   (4717 perm/sec)   p_kst 6.072000e-01   p_cons 8.956000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000190/WDR44.4_2822_10000_0.6072_0.8956_1.png
                gene_name: WDR44
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 44 percent done.
WDR62
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.764585e-02	ci left: 3.069917e-01	ci right 3.253155e-01	k: 3161	n:10000
Cons ci ratio: 4.232859e-02	ci left: 4.517915e-01	ci right 4.714309e-01	k: 4616	n:10000
KS ci ratio: 8.525785e-02	ci left: 1.670085e-01	ci right 1.819816e-01	k: 1744	n:10000
WDR62   10000 perm   2 sec   (4144 perm/sec)   p_kst 1.744000e-01   p_cons 4.616000e-01   p_joint 3.161000e-01

Outputting figure to mutsig2_images.part000000000190/WDR62.4_4700_10000_0.1744_0.4616_0.3161.png
                gene_name: WDR62
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 46 percent done.
WDR70
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.935274e-02	ci left: 6.312063e-01	ci right 6.501117e-01	k: 6407	n:10000
KS ci ratio: 2.493607e-02	ci left: 7.029129e-01	ci right 7.207635e-01	k: 7119	n:10000
WDR70   10000 perm   2 sec   (5841 perm/sec)   p_kst 7.119000e-01   p_cons 6.407000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000190/WDR70.4_2037_10000_0.7119_0.6407_1.png
                gene_name: WDR70
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 48 percent done.
WEE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.553251e-02	ci left: 1.371732e-01	ci right 1.510349e-01	k: 1440	n:10000
Cons ci ratio: 3.158488e-02	ci left: 5.966444e-01	ci right 6.158937e-01	k: 6063	n:10000
KS ci ratio: 1.422220e-01	ci left: 6.555836e-02	ci right 7.569349e-02	k: 705	n:10000
WEE1   10000 perm   2 sec   (5330 perm/sec)   p_kst 7.050000e-02   p_cons 6.063000e-01   p_joint 1.440000e-01

Joint ci ratio: 8.435431e-02	ci left: 9.332451e-02	ci right 1.015929e-01	k: 1948	n:20000
Cons ci ratio: 2.233974e-02	ci left: 5.993886e-01	ci right 6.129806e-01	k: 12124	n:20000
KS ci ratio: 1.016964e-01	ci left: 6.562284e-02	ci right 7.270304e-02	k: 1382	n:20000
WEE1   20000 perm   4 sec   (4773 perm/sec)   p_kst 6.910000e-02   p_cons 6.062000e-01   p_joint 9.740000e-02

Joint ci ratio: 5.710855e-02	ci left: 1.318434e-01	ci right 1.396273e-01	k: 4071	n:30000
Cons ci ratio: 1.814020e-02	ci left: 6.032841e-01	ci right 6.143615e-01	k: 18265	n:30000
KS ci ratio: 8.264018e-02	ci left: 6.687632e-02	ci right 7.267400e-02	k: 2092	n:30000
WEE1   30000 perm   7 sec   (4559 perm/sec)   p_kst 6.973333e-02   p_cons 6.088333e-01   p_joint 1.357000e-01

Outputting figure to mutsig2_images.part000000000190/WEE1.4_1985_30000_0.069733_0.60883_0.1357.png
                gene_name: WEE1
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.070 
        ci_ks_bounds_left: 0.067 
       ci_ks_bounds_right: 0.073 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 50 percent done.
WBSCR22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.223506e-02	ci left: 4.528895e-01	ci right 4.725322e-01	k: 4627	n:10000
Cons ci ratio: 1.129456e-01	ci left: 1.013965e-01	ci right 1.136332e-01	k: 1074	n:10000
KS ci ratio: 3.710244e-02	ci left: 5.175581e-01	ci right 5.372259e-01	k: 5274	n:10000
WBSCR22   10000 perm   2 sec   (6547 perm/sec)   p_kst 5.274000e-01   p_cons 1.074000e-01   p_joint 4.627000e-01

Joint ci ratio: 2.826795e-02	ci left: 4.831987e-01	ci right 4.971042e-01	k: 9803	n:20000
Cons ci ratio: 7.926844e-02	ci left: 1.046148e-01	ci right 1.132993e-01	k: 2178	n:20000
KS ci ratio: 2.601961e-02	ci left: 5.246051e-01	ci right 5.384857e-01	k: 10631	n:20000
WBSCR22   20000 perm   4 sec   (5655 perm/sec)   p_kst 5.315500e-01   p_cons 1.089000e-01   p_joint 4.901500e-01

Outputting figure to mutsig2_images.part000000000190/WBSCR22.3_894_20000_0.53155_0.1089_0.49015.png
                gene_name: WBSCR22
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 52 percent done.
WDR12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.776107e-02	ci left: 8.221868e-01	ci right 8.370206e-01	k: 8297	n:10000
KS ci ratio: 3.702067e-02	ci left: 5.186590e-01	ci right 5.383244e-01	k: 5285	n:10000
WDR12   10000 perm   2 sec   (5955 perm/sec)   p_kst 5.285000e-01   p_cons 8.297000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000190/WDR12.3_1324_10000_0.5285_0.8297_1.png
                gene_name: WDR12
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 54 percent done.
WDR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.214319e-02	ci left: 9.067909e-01	ci right 9.179675e-01	k: 9125	n:10000
KS ci ratio: 2.368207e-02	ci left: 7.238082e-01	ci right 7.412561e-01	k: 7326	n:10000
WDR3   10000 perm   2 sec   (4933 perm/sec)   p_kst 7.326000e-01   p_cons 9.125000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000190/WDR3.3_2936_10000_0.7326_0.9125_1.png
                gene_name: WDR3
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 56 percent done.
WDR46
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.169719e-02	ci left: 9.127588e-01	ci right 9.235961e-01	k: 9183	n:10000
KS ci ratio: 1.322954e-02	ci left: 8.916967e-01	ci right 9.036705e-01	k: 8978	n:10000
WDR46   10000 perm   2 sec   (5715 perm/sec)   p_kst 8.978000e-01   p_cons 9.183000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000190/WDR46.3_1893_10000_0.8978_0.9183_1.png
                gene_name: WDR46
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 57 percent done.
WDR59
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.955174e-02	ci left: 7.928348e-01	ci right 8.085896e-01	k: 8008	n:10000
KS ci ratio: 2.563048e-02	ci left: 6.914151e-01	ci right 7.094680e-01	k: 7005	n:10000
WDR59   10000 perm   2 sec   (5145 perm/sec)   p_kst 7.005000e-01   p_cons 8.008000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000190/WDR59.3_3029_10000_0.7005_0.8008_1.png
                gene_name: WDR59
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 59 percent done.
WDR63
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.144074e-02	ci left: 2.230647e-01	ci right 2.396920e-01	k: 2313	n:10000
Cons ci ratio: 4.032327e-02	ci left: 4.759595e-01	ci right 4.956488e-01	k: 4858	n:10000
KS ci ratio: 7.984796e-02	ci left: 1.863882e-01	ci right 2.019904e-01	k: 1941	n:10000
WDR63   10000 perm   2 sec   (5322 perm/sec)   p_kst 1.941000e-01   p_cons 4.858000e-01   p_joint 2.313000e-01

Outputting figure to mutsig2_images.part000000000190/WDR63.3_2764_10000_0.1941_0.4858_0.2313.png
                gene_name: WDR63
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 61 percent done.
WDR69
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.404887e-02	ci left: 3.352819e-01	ci right 3.540087e-01	k: 3446	n:10000
Cons ci ratio: 4.056430e-03	ci left: 9.873032e-01	ci right 9.914042e-01	k: 9895	n:10000
KS ci ratio: 7.066629e-02	ci left: 2.269154e-01	ci right 2.436391e-01	k: 2352	n:10000
WDR69   10000 perm   2 sec   (6069 perm/sec)   p_kst 2.352000e-01   p_cons 9.895000e-01   p_joint 3.446000e-01

Outputting figure to mutsig2_images.part000000000190/WDR69.3_1300_10000_0.2352_0.9895_0.3446.png
                gene_name: WDR69
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 63 percent done.
WDR75
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.805849e-02	ci left: 5.048513e-01	ci right 5.245401e-01	k: 5147	n:10000
Cons ci ratio: 2.053356e-02	ci left: 7.765116e-01	ci right 7.927222e-01	k: 7847	n:10000
KS ci ratio: 5.432516e-02	ci left: 3.329974e-01	ci right 3.516945e-01	k: 3423	n:10000
WDR75   10000 perm   2 sec   (5364 perm/sec)   p_kst 3.423000e-01   p_cons 7.847000e-01   p_joint 5.147000e-01

Outputting figure to mutsig2_images.part000000000190/WDR75.3_2577_10000_0.3423_0.7847_0.5147.png
                gene_name: WDR75
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 65 percent done.
WDR78
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.237835e-02	ci left: 7.456379e-01	ci right 7.626138e-01	k: 7542	n:10000
KS ci ratio: 6.553133e-03	ci left: 9.695265e-01	ci right 9.759942e-01	k: 9729	n:10000
WDR78   10000 perm   2 sec   (5178 perm/sec)   p_kst 9.729000e-01   p_cons 7.542000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000190/WDR78.3_2672_10000_0.9729_0.7542_1.png
                gene_name: WDR78
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
WDR86
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.766130e-01	ci left: 3.284168e-03	ci right 6.016771e-03	k: 45	n:10000
Cons ci ratio: 4.210789e-02	ci left: 4.543870e-01	ci right 4.740339e-01	k: 4642	n:10000
KS ci ratio: 7.533478e-01	ci left: 1.699088e-03	ci right 3.807298e-03	k: 26	n:10000
WDR86   10000 perm   1 sec   (6842 perm/sec)   p_kst 2.600000e-03   p_cons 4.642000e-01   p_joint 4.500000e-03

Joint ci ratio: 3.039027e-01	ci left: 6.997074e-03	ci right 9.548992e-03	k: 164	n:20000
Cons ci ratio: 2.964289e-02	ci left: 4.595164e-01	ci right 4.733934e-01	k: 9329	n:20000
KS ci ratio: 5.278323e-01	ci left: 2.028954e-03	ci right 3.521464e-03	k: 54	n:20000
WDR86   20000 perm   4 sec   (5678 perm/sec)   p_kst 2.700000e-03   p_cons 4.664500e-01   p_joint 8.200000e-03

Joint ci ratio: 1.791977e-01	ci left: 1.429182e-02	ci right 1.713642e-02	k: 470	n:30000
Cons ci ratio: 2.419669e-02	ci left: 4.609415e-01	ci right 4.722650e-01	k: 13998	n:30000
KS ci ratio: 4.404461e-01	ci left: 2.055718e-03	ci right 3.243871e-03	k: 78	n:30000
WDR86   30000 perm   6 sec   (5421 perm/sec)   p_kst 2.600000e-03   p_cons 4.666000e-01   p_joint 1.566667e-02

Joint ci ratio: 1.869226e-01	ci left: 9.857902e-03	ci right 1.191403e-02	k: 434	n:40000
Cons ci ratio: 2.172908e-02	ci left: 4.437174e-01	ci right 4.534900e-01	k: 17944	n:40000
KS ci ratio: 3.876378e-01	ci left: 2.057110e-03	ci right 3.067270e-03	k: 101	n:40000
WDR86   40000 perm   8 sec   (5246 perm/sec)   p_kst 2.525000e-03   p_cons 4.486000e-01   p_joint 1.085000e-02

Joint ci ratio: 2.070166e-01	ci left: 6.382787e-03	ci right 7.875297e-03	k: 355	n:50000
Cons ci ratio: 1.934358e-02	ci left: 4.465715e-01	ci right 4.553142e-01	k: 22547	n:50000
KS ci ratio: 3.420396e-01	ci left: 2.172736e-03	ci right 3.086536e-03	k: 130	n:50000
WDR86   50000 perm   10 sec   (5085 perm/sec)   p_kst 2.600000e-03   p_cons 4.509400e-01   p_joint 7.100000e-03

Joint ci ratio: 2.320561e-01	ci left: 4.184173e-03	ci right 5.297898e-03	k: 283	n:60000
Cons ci ratio: 1.771450e-02	ci left: 4.453807e-01	ci right 4.533576e-01	k: 26962	n:60000
KS ci ratio: 3.218217e-01	ci left: 2.070336e-03	ci right 2.878991e-03	k: 147	n:60000
WDR86   60000 perm   12 sec   (4966 perm/sec)   p_kst 2.450000e-03   p_cons 4.493667e-01   p_joint 4.716667e-03

Joint ci ratio: 1.731169e-01	ci left: 6.641711e-03	ci right 7.913932e-03	k: 508	n:70000
Cons ci ratio: 1.581369e-02	ci left: 4.637553e-01	ci right 4.711617e-01	k: 32722	n:70000
KS ci ratio: 2.909923e-01	ci left: 2.209869e-03	ci right 2.975150e-03	k: 180	n:70000
WDR86   70000 perm   14 sec   (4828 perm/sec)   p_kst 2.571429e-03   p_cons 4.674571e-01   p_joint 7.257143e-03

Joint ci ratio: 1.828442e-01	ci left: 5.190067e-03	ci right 6.246264e-03	k: 456	n:80000
Cons ci ratio: 1.479261e-02	ci left: 4.639876e-01	ci right 4.709148e-01	k: 37396	n:80000
KS ci ratio: 2.926648e-01	ci left: 1.910420e-03	ci right 2.576502e-03	k: 178	n:80000
WDR86   80000 perm   17 sec   (4708 perm/sec)   p_kst 2.225000e-03   p_cons 4.674500e-01   p_joint 5.700000e-03

Joint ci ratio: 1.725773e-01	ci left: 5.207958e-03	ci right 6.202086e-03	k: 512	n:90000
Cons ci ratio: 1.393435e-02	ci left: 4.646245e-01	ci right 4.711553e-01	k: 42110	n:90000
KS ci ratio: 2.748181e-01	ci left: 1.945864e-03	ci right 2.575794e-03	k: 202	n:90000
WDR86   90000 perm   20 sec   (4612 perm/sec)   p_kst 2.244444e-03   p_cons 4.678889e-01   p_joint 5.688889e-03

Joint ci ratio: 1.761113e-01	ci left: 4.495741e-03	ci right 5.373352e-03	k: 492	n:100000
Cons ci ratio: 1.321769e-02	ci left: 4.648534e-01	ci right 4.710485e-01	k: 46795	n:100000
KS ci ratio: 2.548677e-01	ci left: 2.059413e-03	ci right 2.670024e-03	k: 235	n:100000
WDR86   100000 perm   22 sec   (4524 perm/sec)   p_kst 2.350000e-03   p_cons 4.679500e-01   p_joint 4.920000e-03

Joint ci ratio: 1.750840e-01	ci left: 4.139117e-03	ci right 4.941895e-03	k: 498	n:110000
Cons ci ratio: 1.258523e-02	ci left: 4.656837e-01	ci right 4.715906e-01	k: 51550	n:110000
KS ci ratio: 2.432889e-01	ci left: 2.068240e-03	ci right 2.649404e-03	k: 258	n:110000
WDR86   110000 perm   25 sec   (4433 perm/sec)   p_kst 2.345455e-03   p_cons 4.686364e-01   p_joint 4.527273e-03

Joint ci ratio: 1.679970e-01	ci left: 4.137143e-03	ci right 4.903772e-03	k: 541	n:120000
Cons ci ratio: 1.205962e-02	ci left: 4.653901e-01	ci right 4.710448e-01	k: 56186	n:120000
KS ci ratio: 2.356838e-01	ci left: 2.029050e-03	ci right 2.578779e-03	k: 275	n:120000
WDR86   120000 perm   28 sec   (4343 perm/sec)   p_kst 2.291667e-03   p_cons 4.682167e-01   p_joint 4.508333e-03

Joint ci ratio: 1.645562e-01	ci left: 3.988436e-03	ci right 4.710871e-03	k: 564	n:130000
Cons ci ratio: 1.158136e-02	ci left: 4.657228e-01	ci right 4.711555e-01	k: 60897	n:130000
KS ci ratio: 2.272006e-01	ci left: 2.025143e-03	ci right 2.551298e-03	k: 296	n:130000
WDR86   130000 perm   31 sec   (4257 perm/sec)   p_kst 2.276923e-03   p_cons 4.684385e-01   p_joint 4.338462e-03

Joint ci ratio: 1.668201e-01	ci left: 3.600787e-03	ci right 4.262877e-03	k: 549	n:140000
Cons ci ratio: 1.115519e-02	ci left: 4.660403e-01	ci right 4.712753e-01	k: 65612	n:140000
KS ci ratio: 2.195721e-01	ci left: 2.022098e-03	ci right 2.527442e-03	k: 317	n:140000
WDR86   140000 perm   33 sec   (4180 perm/sec)   p_kst 2.264286e-03   p_cons 4.686571e-01   p_joint 3.921429e-03

Joint ci ratio: 1.489962e-01	ci left: 4.250996e-03	ci right 4.941701e-03	k: 688	n:150000
Cons ci ratio: 1.078410e-02	ci left: 4.657987e-01	ci right 4.708558e-01	k: 70249	n:150000
KS ci ratio: 2.136132e-01	ci left: 2.000780e-03	ci right 2.485448e-03	k: 335	n:150000
WDR86   150000 perm   37 sec   (4108 perm/sec)   p_kst 2.233333e-03   p_cons 4.683267e-01   p_joint 4.586667e-03

Joint ci ratio: 1.551284e-01	ci left: 3.666571e-03	ci right 4.289115e-03	k: 635	n:160000
Cons ci ratio: 1.044511e-02	ci left: 4.657150e-01	ci right 4.706112e-01	k: 74906	n:160000
KS ci ratio: 2.063689e-01	ci left: 2.017847e-03	ci right 2.487981e-03	k: 359	n:160000
WDR86   160000 perm   40 sec   (4038 perm/sec)   p_kst 2.243750e-03   p_cons 4.681625e-01   p_joint 3.968750e-03

Joint ci ratio: 1.280510e-01	ci left: 5.131167e-03	ci right 5.838800e-03	k: 931	n:170000
Cons ci ratio: 1.047457e-02	ci left: 4.493381e-01	ci right 4.540753e-01	k: 76790	n:170000
KS ci ratio: 1.992955e-01	ci left: 2.044328e-03	ci right 2.502322e-03	k: 385	n:170000
WDR86   170000 perm   43 sec   (3972 perm/sec)   p_kst 2.264706e-03   p_cons 4.517059e-01   p_joint 5.476471e-03

Joint ci ratio: 1.282090e-01	ci left: 4.835299e-03	ci right 5.503013e-03	k: 929	n:180000
Cons ci ratio: 1.018746e-02	ci left: 4.490158e-01	ci right 4.536191e-01	k: 81237	n:180000
KS ci ratio: 1.940868e-01	ci left: 2.041676e-03	ci right 2.485709e-03	k: 406	n:180000
WDR86   180000 perm   46 sec   (3909 perm/sec)   p_kst 2.255556e-03   p_cons 4.513167e-01   p_joint 5.161111e-03

Joint ci ratio: 1.249602e-01	ci left: 4.830538e-03	ci right 5.479438e-03	k: 978	n:190000
Cons ci ratio: 9.927051e-03	ci left: 4.485135e-01	ci right 4.529933e-01	k: 85643	n:190000
KS ci ratio: 1.899346e-01	ci left: 2.024401e-03	ci right 2.454170e-03	k: 424	n:190000
WDR86   190000 perm   49 sec   (3842 perm/sec)   p_kst 2.231579e-03   p_cons 4.507526e-01   p_joint 5.147368e-03

Joint ci ratio: 1.214723e-01	ci left: 4.865232e-03	ci right 5.499240e-03	k: 1035	n:200000
Cons ci ratio: 9.676334e-03	ci left: 4.485376e-01	ci right 4.529038e-01	k: 90144	n:200000
KS ci ratio: 1.835628e-01	ci left: 2.066174e-03	ci right 2.488460e-03	k: 454	n:200000
WDR86   200000 perm   53 sec   (3782 perm/sec)   p_kst 2.270000e-03   p_cons 4.507200e-01   p_joint 5.175000e-03

Joint ci ratio: 1.079254e-01	ci left: 5.905796e-03	ci right 6.584132e-03	k: 1310	n:210000
Cons ci ratio: 9.443975e-03	ci left: 4.485464e-01	ci right 4.528073e-01	k: 94642	n:210000
KS ci ratio: 1.796580e-01	ci left: 2.058692e-03	ci right 2.469526e-03	k: 474	n:210000
WDR86   210000 perm   56 sec   (3720 perm/sec)   p_kst 2.257143e-03   p_cons 4.506762e-01   p_joint 6.238095e-03

Joint ci ratio: 1.096797e-01	ci left: 5.455989e-03	ci right 6.093503e-03	k: 1269	n:220000
Cons ci ratio: 9.231232e-03	ci left: 4.483603e-01	ci right 4.525229e-01	k: 99097	n:220000
KS ci ratio: 1.761706e-01	ci left: 2.047632e-03	ci right 2.447482e-03	k: 493	n:220000
WDR86   220000 perm   60 sec   (3662 perm/sec)   p_kst 2.240909e-03   p_cons 4.504409e-01   p_joint 5.768182e-03

Joint ci ratio: 1.068137e-01	ci left: 5.510658e-03	ci right 6.136677e-03	k: 1338	n:230000
Cons ci ratio: 9.027248e-03	ci left: 4.484651e-01	ci right 4.525362e-01	k: 103615	n:230000
KS ci ratio: 1.723743e-01	ci left: 2.050085e-03	ci right 2.440889e-03	k: 515	n:230000
WDR86   230000 perm   64 sec   (3598 perm/sec)   p_kst 2.239130e-03   p_cons 4.505000e-01   p_joint 5.817391e-03

Joint ci ratio: 1.044602e-01	ci left: 5.528501e-03	ci right 6.141859e-03	k: 1399	n:240000
Cons ci ratio: 8.837554e-03	ci left: 4.484871e-01	ci right 4.524724e-01	k: 108115	n:240000
KS ci ratio: 1.686563e-01	ci left: 2.056409e-03	ci right 2.439104e-03	k: 538	n:240000
WDR86   240000 perm   68 sec   (3535 perm/sec)   p_kst 2.241667e-03   p_cons 4.504792e-01   p_joint 5.829167e-03

Joint ci ratio: 1.066387e-01	ci left: 5.089212e-03	ci right 5.666346e-03	k: 1343	n:250000
Cons ci ratio: 8.661226e-03	ci left: 4.484003e-01	ci right 4.523048e-01	k: 112588	n:250000
KS ci ratio: 1.654643e-01	ci left: 2.054641e-03	ci right 2.429049e-03	k: 559	n:250000
WDR86   250000 perm   72 sec   (3470 perm/sec)   p_kst 2.236000e-03   p_cons 4.503520e-01   p_joint 5.372000e-03

Joint ci ratio: 1.045589e-01	ci left: 5.095681e-03	ci right 5.661585e-03	k: 1397	n:260000
Cons ci ratio: 8.492210e-03	ci left: 4.484862e-01	ci right 4.523149e-01	k: 117104	n:260000
KS ci ratio: 1.625872e-01	ci left: 2.049381e-03	ci right 2.415703e-03	k: 579	n:260000
WDR86   260000 perm   76 sec   (3414 perm/sec)   p_kst 2.226923e-03   p_cons 4.504000e-01   p_joint 5.373077e-03

Joint ci ratio: 1.024544e-01	ci left: 5.116209e-03	ci right 5.672267e-03	k: 1455	n:270000
Cons ci ratio: 8.336022e-03	ci left: 4.483702e-01	ci right 4.521271e-01	k: 121567	n:270000
KS ci ratio: 1.594561e-01	ci left: 2.055231e-03	ci right 2.414846e-03	k: 602	n:270000
WDR86   270000 perm   80 sec   (3363 perm/sec)   p_kst 2.229630e-03   p_cons 4.502481e-01   p_joint 5.388889e-03

Joint ci ratio: 9.481280e-02	ci left: 5.780056e-03	ci right 6.358811e-03	k: 1698	n:280000
Cons ci ratio: 8.187790e-03	ci left: 4.482846e-01	ci right 4.519736e-01	k: 126036	n:280000
KS ci ratio: 1.560005e-01	ci left: 2.074454e-03	ci right 2.428831e-03	k: 629	n:280000
WDR86   280000 perm   84 sec   (3319 perm/sec)   p_kst 2.246429e-03   p_cons 4.501286e-01   p_joint 6.064286e-03

Joint ci ratio: 9.312859e-02	ci left: 5.789513e-03	ci right 6.358357e-03	k: 1760	n:290000
Cons ci ratio: 8.041871e-03	ci left: 4.485328e-01	ci right 4.521578e-01	k: 130600	n:290000
KS ci ratio: 1.535824e-01	ci left: 2.069215e-03	ci right 2.416714e-03	k: 649	n:290000
WDR86   290000 perm   89 sec   (3274 perm/sec)   p_kst 2.237931e-03   p_cons 4.503448e-01   p_joint 6.068966e-03

Joint ci ratio: 9.186117e-02	ci left: 5.756080e-03	ci right 6.313527e-03	k: 1809	n:300000
Cons ci ratio: 7.906410e-03	ci left: 4.485818e-01	ci right 4.521458e-01	k: 135109	n:300000
KS ci ratio: 1.524176e-01	ci left: 2.032296e-03	ci right 2.370769e-03	k: 659	n:300000
WDR86   300000 perm   93 sec   (3230 perm/sec)   p_kst 2.196667e-03   p_cons 4.503633e-01   p_joint 6.030000e-03

Joint ci ratio: 9.076699e-02	ci left: 5.709088e-03	ci right 6.255048e-03	k: 1853	n:310000
Cons ci ratio: 7.783452e-03	ci left: 4.482540e-01	ci right 4.517598e-01	k: 139502	n:310000
KS ci ratio: 1.502707e-01	ci left: 2.025706e-03	ci right 2.357903e-03	k: 678	n:310000
WDR86   310000 perm   97 sec   (3181 perm/sec)   p_kst 2.187097e-03   p_cons 4.500065e-01   p_joint 5.977419e-03

Joint ci ratio: 9.558708e-02	ci left: 4.978135e-03	ci right 5.480890e-03	k: 1672	n:320000
Cons ci ratio: 7.660198e-03	ci left: 4.483252e-01	ci right 4.517757e-01	k: 144016	n:320000
KS ci ratio: 1.479997e-01	ci left: 2.025579e-03	ci right 2.352291e-03	k: 699	n:320000
WDR86   320000 perm   102 sec   (3139 perm/sec)   p_kst 2.184375e-03   p_cons 4.500500e-01   p_joint 5.225000e-03

Joint ci ratio: 9.463298e-02	ci left: 4.927855e-03	ci right 5.420289e-03	k: 1706	n:330000
Cons ci ratio: 7.539803e-03	ci left: 4.485772e-01	ci right 4.519752e-01	k: 148591	n:330000
KS ci ratio: 1.453245e-01	ci left: 2.040096e-03	ci right 2.362685e-03	k: 725	n:330000
WDR86   330000 perm   107 sec   (3093 perm/sec)   p_kst 2.196970e-03   p_cons 4.502758e-01   p_joint 5.169697e-03

Joint ci ratio: 1.081794e-01	ci left: 3.638882e-03	ci right 4.057880e-03	k: 1307	n:340000
Cons ci ratio: 7.429102e-03	ci left: 4.485355e-01	ci right 4.518830e-01	k: 153071	n:340000
KS ci ratio: 1.430756e-01	ci left: 2.045300e-03	ci right 2.363280e-03	k: 748	n:340000
WDR86   340000 perm   111 sec   (3050 perm/sec)   p_kst 2.200000e-03   p_cons 4.502088e-01   p_joint 3.844118e-03

Joint ci ratio: 1.066813e-01	ci left: 3.637787e-03	ci right 4.050494e-03	k: 1344	n:350000
Cons ci ratio: 7.319546e-03	ci left: 4.487393e-01	ci right 4.520387e-01	k: 157636	n:350000
KS ci ratio: 1.407454e-01	ci left: 2.055756e-03	ci right 2.369719e-03	k: 773	n:350000
WDR86   350000 perm   116 sec   (3008 perm/sec)   p_kst 2.208571e-03   p_cons 4.503886e-01   p_joint 3.840000e-03

Joint ci ratio: 1.102838e-01	ci left: 3.304297e-03	ci right 3.692651e-03	k: 1258	n:360000
Cons ci ratio: 7.217895e-03	ci left: 4.487127e-01	ci right 4.519659e-01	k: 162122	n:360000
KS ci ratio: 1.390497e-01	ci left: 2.049582e-03	ci right 2.358518e-03	k: 792	n:360000
WDR86   360000 perm   121 sec   (2970 perm/sec)   p_kst 2.200000e-03   p_cons 4.503389e-01   p_joint 3.494444e-03

Joint ci ratio: 8.788161e-02	ci left: 5.113514e-03	ci right 5.586175e-03	k: 1978	n:370000
Cons ci ratio: 7.118188e-03	ci left: 4.488391e-01	ci right 4.520481e-01	k: 166664	n:370000
KS ci ratio: 1.373291e-01	ci left: 2.046373e-03	ci right 2.350697e-03	k: 812	n:370000
WDR86   370000 perm   126 sec   (2930 perm/sec)   p_kst 2.194595e-03   p_cons 4.504432e-01   p_joint 5.345946e-03

Joint ci ratio: 8.672801e-02	ci left: 5.115377e-03	ci right 5.581689e-03	k: 2031	n:380000
Cons ci ratio: 7.026534e-03	ci left: 4.486751e-01	ci right 4.518414e-01	k: 171098	n:380000
KS ci ratio: 1.356708e-01	ci left: 2.043355e-03	ci right 2.343264e-03	k: 832	n:380000
WDR86   380000 perm   131 sec   (2890 perm/sec)   p_kst 2.189474e-03   p_cons 4.502579e-01   p_joint 5.344737e-03

Joint ci ratio: 8.416977e-02	ci left: 5.297899e-03	ci right 5.765904e-03	k: 2156	n:390000
Cons ci ratio: 6.933588e-03	ci left: 4.488581e-01	ci right 4.519837e-01	k: 175664	n:390000
KS ci ratio: 1.337573e-01	ci left: 2.050426e-03	ci right 2.346791e-03	k: 856	n:390000
WDR86   390000 perm   137 sec   (2856 perm/sec)   p_kst 2.194872e-03   p_cons 4.504205e-01   p_joint 5.528205e-03

Joint ci ratio: 8.427388e-02	ci left: 5.153198e-03	ci right 5.609012e-03	k: 2151	n:400000
Cons ci ratio: 6.846170e-03	ci left: 4.488923e-01	ci right 4.519785e-01	k: 180174	n:400000
KS ci ratio: 1.318475e-01	ci left: 2.059590e-03	ci right 2.352696e-03	k: 881	n:400000
WDR86   400000 perm   142 sec   (2822 perm/sec)   p_kst 2.202500e-03   p_cons 4.504350e-01   p_joint 5.377500e-03

Joint ci ratio: 8.304698e-02	ci left: 5.180345e-03	ci right 5.631566e-03	k: 2215	n:410000
Cons ci ratio: 6.760245e-03	ci left: 4.490518e-01	ci right 4.521002e-01	k: 184736	n:410000
KS ci ratio: 1.300173e-01	ci left: 2.068335e-03	ci right 2.358284e-03	k: 906	n:410000
WDR86   410000 perm   147 sec   (2788 perm/sec)   p_kst 2.209756e-03   p_cons 4.505756e-01   p_joint 5.402439e-03

Joint ci ratio: 8.466122e-02	ci left: 4.863495e-03	ci right 5.295757e-03	k: 2132	n:420000
Cons ci ratio: 6.678632e-03	ci left: 4.491182e-01	ci right 4.521301e-01	k: 189262	n:420000
KS ci ratio: 1.283302e-01	ci left: 2.074385e-03	ci right 2.361123e-03	k: 930	n:420000
WDR86   420000 perm   152 sec   (2756 perm/sec)   p_kst 2.214286e-03   p_cons 4.506238e-01   p_joint 5.076190e-03

Joint ci ratio: 9.316811e-02	ci left: 3.908922e-03	ci right 4.293156e-03	k: 1762	n:430000
Cons ci ratio: 6.611914e-03	ci left: 4.482820e-01	ci right 4.512582e-01	k: 193401	n:430000
KS ci ratio: 1.273098e-01	ci left: 2.059911e-03	ci right 2.342213e-03	k: 945	n:430000
WDR86   430000 perm   158 sec   (2725 perm/sec)   p_kst 2.197674e-03   p_cons 4.497698e-01   p_joint 4.097674e-03

Joint ci ratio: 9.233486e-02	ci left: 3.891122e-03	ci right 4.270000e-03	k: 1794	n:440000
Cons ci ratio: 6.537029e-03	ci left: 4.482475e-01	ci right 4.511895e-01	k: 197876	n:440000
KS ci ratio: 1.262475e-01	ci left: 2.048305e-03	ci right 2.326498e-03	k: 961	n:440000
WDR86   440000 perm   163 sec   (2695 perm/sec)   p_kst 2.184091e-03   p_cons 4.497182e-01   p_joint 4.077273e-03

Joint ci ratio: 9.134802e-02	ci left: 3.889328e-03	ci right 4.263768e-03	k: 1833	n:450000
Cons ci ratio: 6.464806e-03	ci left: 4.482013e-01	ci right 4.511104e-01	k: 202345	n:450000
KS ci ratio: 1.248918e-01	ci left: 2.047987e-03	ci right 2.322930e-03	k: 982	n:450000
WDR86   450000 perm   169 sec   (2665 perm/sec)   p_kst 2.182222e-03   p_cons 4.496556e-01   p_joint 4.073333e-03

Joint ci ratio: 9.041639e-02	ci left: 3.885508e-03	ci right 4.255564e-03	k: 1871	n:460000
Cons ci ratio: 6.395290e-03	ci left: 4.481291e-01	ci right 4.510063e-01	k: 206801	n:460000
KS ci ratio: 1.235173e-01	ci left: 2.049806e-03	ci right 2.321742e-03	k: 1004	n:460000
WDR86   460000 perm   175 sec   (2635 perm/sec)   p_kst 2.182609e-03   p_cons 4.495674e-01   p_joint 4.067391e-03

Joint ci ratio: 8.944220e-02	ci left: 3.888110e-03	ci right 4.254215e-03	k: 1912	n:470000
Cons ci ratio: 6.327016e-03	ci left: 4.481345e-01	ci right 4.509810e-01	k: 211292	n:470000
KS ci ratio: 1.222468e-01	ci left: 2.049501e-03	ci right 2.318397e-03	k: 1025	n:470000
WDR86   470000 perm   180 sec   (2606 perm/sec)   p_kst 2.180851e-03   p_cons 4.495574e-01   p_joint 4.068085e-03

Joint ci ratio: 8.872709e-02	ci left: 3.870251e-03	ci right 4.231609e-03	k: 1943	n:480000
Cons ci ratio: 6.260726e-03	ci left: 4.481524e-01	ci right 4.509690e-01	k: 215789	n:480000
KS ci ratio: 1.212470e-01	ci left: 2.041140e-03	ci right 2.306593e-03	k: 1042	n:480000
WDR86   480000 perm   186 sec   (2579 perm/sec)   p_kst 2.170833e-03   p_cons 4.495604e-01   p_joint 4.047917e-03

Joint ci ratio: 8.778375e-02	ci left: 3.875089e-03	ci right 4.232855e-03	k: 1985	n:490000
Cons ci ratio: 6.199390e-03	ci left: 4.479371e-01	ci right 4.507247e-01	k: 220172	n:490000
KS ci ratio: 1.198754e-01	ci left: 2.046987e-03	ci right 2.309975e-03	k: 1066	n:490000
WDR86   490000 perm   192 sec   (2550 perm/sec)   p_kst 2.175510e-03   p_cons 4.493306e-01   p_joint 4.051020e-03

Joint ci ratio: 8.680542e-02	ci left: 3.885623e-03	ci right 4.240161e-03	k: 2030	n:500000
Cons ci ratio: 6.138307e-03	ci left: 4.478526e-01	ci right 4.506120e-01	k: 224616	n:500000
KS ci ratio: 1.181700e-01	ci left: 2.066203e-03	ci right 2.327619e-03	k: 1097	n:500000
WDR86   500000 perm   198 sec   (2522 perm/sec)   p_kst 2.194000e-03   p_cons 4.492320e-01   p_joint 4.060000e-03

Joint ci ratio: 8.596309e-02	ci left: 3.886172e-03	ci right 4.237146e-03	k: 2070	n:510000
Cons ci ratio: 6.078343e-03	ci left: 4.478244e-01	ci right 4.505566e-01	k: 229087	n:510000
KS ci ratio: 1.173190e-01	ci left: 2.056137e-03	ci right 2.314276e-03	k: 1113	n:510000
WDR86   510000 perm   205 sec   (2492 perm/sec)   p_kst 2.182353e-03   p_cons 4.491902e-01   p_joint 4.058824e-03

Joint ci ratio: 8.524624e-02	ci left: 3.877304e-03	ci right 4.224412e-03	k: 2105	n:520000
Cons ci ratio: 6.021765e-03	ci left: 4.476609e-01	ci right 4.503666e-01	k: 233487	n:520000
KS ci ratio: 1.163314e-01	ci left: 2.052066e-03	ci right 2.307377e-03	k: 1132	n:520000
WDR86   520000 perm   211 sec   (2466 perm/sec)   p_kst 2.176923e-03   p_cons 4.490135e-01   p_joint 4.048077e-03

Joint ci ratio: 8.417284e-02	ci left: 3.903878e-03	ci right 4.248748e-03	k: 2159	n:530000
Cons ci ratio: 5.964552e-03	ci left: 4.476848e-01	ci right 4.503648e-01	k: 237983	n:530000
KS ci ratio: 1.147709e-01	ci left: 2.070149e-03	ci right 2.324021e-03	k: 1163	n:530000
WDR86   530000 perm   217 sec   (2438 perm/sec)   p_kst 2.194340e-03   p_cons 4.490245e-01   p_joint 4.073585e-03

Joint ci ratio: 8.270871e-02	ci left: 3.971207e-03	ci right 4.315628e-03	k: 2236	n:540000
Cons ci ratio: 5.907834e-03	ci left: 4.478005e-01	ci right 4.504556e-01	k: 242529	n:540000
KS ci ratio: 1.136534e-01	ci left: 2.073189e-03	ci right 2.324792e-03	k: 1186	n:540000
WDR86   540000 perm   224 sec   (2409 perm/sec)   p_kst 2.196296e-03   p_cons 4.491278e-01   p_joint 4.140741e-03

Joint ci ratio: 8.265621e-02	ci left: 3.904339e-03	ci right 4.242736e-03	k: 2239	n:550000
Cons ci ratio: 5.852768e-03	ci left: 4.479066e-01	ci right 4.505376e-01	k: 247072	n:550000
KS ci ratio: 1.126146e-01	ci left: 2.074363e-03	ci right 2.323654e-03	k: 1208	n:550000
WDR86   550000 perm   231 sec   (2381 perm/sec)   p_kst 2.196364e-03   p_cons 4.492218e-01   p_joint 4.070909e-03

Joint ci ratio: 8.212716e-02	ci left: 3.885336e-03	ci right 4.219827e-03	k: 2268	n:560000
Cons ci ratio: 5.799946e-03	ci left: 4.479466e-01	ci right 4.505539e-01	k: 251580	n:560000
KS ci ratio: 1.116492e-01	ci left: 2.073769e-03	ci right 2.320712e-03	k: 1229	n:560000
WDR86   560000 perm   238 sec   (2357 perm/sec)   p_kst 2.194643e-03   p_cons 4.492500e-01   p_joint 4.050000e-03

Joint ci ratio: 8.074826e-02	ci left: 3.951233e-03	ci right 4.285417e-03	k: 2346	n:570000
Cons ci ratio: 5.748508e-03	ci left: 4.479870e-01	ci right 4.505714e-01	k: 256089	n:570000
KS ci ratio: 1.107970e-01	ci left: 2.069793e-03	ci right 2.314258e-03	k: 1248	n:570000
WDR86   570000 perm   244 sec   (2332 perm/sec)   p_kst 2.189474e-03   p_cons 4.492789e-01   p_joint 4.115789e-03

Joint ci ratio: 8.088968e-02	ci left: 3.869587e-03	ci right 4.197466e-03	k: 2338	n:580000
Cons ci ratio: 5.698475e-03	ci left: 4.480210e-01	ci right 4.505830e-01	k: 260595	n:580000
KS ci ratio: 1.100076e-01	ci left: 2.064284e-03	ci right 2.306249e-03	k: 1266	n:580000
WDR86   580000 perm   251 sec   (2309 perm/sec)   p_kst 2.182759e-03   p_cons 4.493017e-01   p_joint 4.031034e-03

Joint ci ratio: 8.007172e-02	ci left: 3.883721e-03	ci right 4.209315e-03	k: 2386	n:590000
Cons ci ratio: 5.650480e-03	ci left: 4.479878e-01	ci right 4.505280e-01	k: 265062	n:590000
KS ci ratio: 1.090647e-01	ci left: 2.065563e-03	ci right 2.305469e-03	k: 1288	n:590000
WDR86   590000 perm   258 sec   (2287 perm/sec)   p_kst 2.183051e-03   p_cons 4.492576e-01   p_joint 4.044068e-03

Joint ci ratio: 7.950791e-02	ci left: 3.874527e-03	ci right 4.196957e-03	k: 2420	n:600000
Cons ci ratio: 5.602224e-03	ci left: 4.480841e-01	ci right 4.506031e-01	k: 269606	n:600000
KS ci ratio: 1.084362e-01	ci left: 2.055456e-03	ci right 2.292725e-03	k: 1303	n:600000
WDR86   600000 perm   265 sec   (2263 perm/sec)   p_kst 2.171667e-03   p_cons 4.493433e-01   p_joint 4.033333e-03

Joint ci ratio: 7.893970e-02	ci left: 3.867250e-03	ci right 4.186669e-03	k: 2455	n:610000
Cons ci ratio: 5.556399e-03	ci left: 4.480692e-01	ci right 4.505674e-01	k: 274084	n:610000
KS ci ratio: 1.076143e-01	ci left: 2.053661e-03	ci right 2.288812e-03	k: 1323	n:610000
WDR86   610000 perm   272 sec   (2241 perm/sec)   p_kst 2.168852e-03   p_cons 4.493180e-01   p_joint 4.024590e-03

Joint ci ratio: 7.830464e-02	ci left: 3.868123e-03	ci right 4.184926e-03	k: 2495	n:620000
Cons ci ratio: 5.511644e-03	ci left: 4.480580e-01	ci right 4.505360e-01	k: 278564	n:620000
KS ci ratio: 1.068506e-01	ci left: 2.050360e-03	ci right 2.283363e-03	k: 1342	n:620000
WDR86   620000 perm   279 sec   (2219 perm/sec)   p_kst 2.164516e-03   p_cons 4.492968e-01   p_joint 4.024194e-03

Joint ci ratio: 7.766928e-02	ci left: 3.870534e-03	ci right 4.184847e-03	k: 2536	n:630000
Cons ci ratio: 5.468550e-03	ci left: 4.479934e-01	ci right 4.504515e-01	k: 283010	n:630000
KS ci ratio: 1.059082e-01	ci left: 2.054897e-03	ci right 2.286227e-03	k: 1366	n:630000
WDR86   630000 perm   287 sec   (2199 perm/sec)   p_kst 2.168254e-03   p_cons 4.492222e-01   p_joint 4.025397e-03

Joint ci ratio: 7.707917e-02	ci left: 3.869816e-03	ci right 4.181575e-03	k: 2575	n:640000
Cons ci ratio: 5.426931e-03	ci left: 4.478871e-01	ci right 4.503259e-01	k: 287428	n:640000
KS ci ratio: 1.050283e-01	ci left: 2.057779e-03	ci right 2.287390e-03	k: 1389	n:640000
WDR86   640000 perm   294 sec   (2179 perm/sec)   p_kst 2.170312e-03   p_cons 4.491062e-01   p_joint 4.023438e-03

Joint ci ratio: 7.647295e-02	ci left: 3.872146e-03	ci right 4.181531e-03	k: 2616	n:650000
Cons ci ratio: 5.384221e-03	ci left: 4.479702e-01	ci right 4.503902e-01	k: 291967	n:650000
KS ci ratio: 1.042438e-01	ci left: 2.057583e-03	ci right 2.285352e-03	k: 1410	n:650000
WDR86   650000 perm   301 sec   (2159 perm/sec)   p_kst 2.169231e-03   p_cons 4.491800e-01   p_joint 4.024615e-03

Joint ci ratio: 7.592384e-02	ci left: 3.869956e-03	ci right 4.176847e-03	k: 2654	n:660000
Cons ci ratio: 5.342749e-03	ci left: 4.480282e-01	ci right 4.504298e-01	k: 296491	n:660000
KS ci ratio: 1.033322e-01	ci left: 2.063303e-03	ci right 2.289587e-03	k: 1435	n:660000
WDR86   660000 perm   309 sec   (2139 perm/sec)   p_kst 2.174242e-03   p_cons 4.492288e-01   p_joint 4.021212e-03

Joint ci ratio: 7.530222e-02	ci left: 3.876626e-03	ci right 4.181419e-03	k: 2698	n:670000
Cons ci ratio: 5.303805e-03	ci left: 4.479368e-01	ci right 4.503203e-01	k: 300916	n:670000
KS ci ratio: 1.027263e-01	ci left: 2.057227e-03	ci right 2.281441e-03	k: 1452	n:670000
WDR86   670000 perm   316 sec   (2119 perm/sec)   p_kst 2.167164e-03   p_cons 4.491284e-01   p_joint 4.026866e-03

Joint ci ratio: 7.466829e-02	ci left: 3.885996e-03	ci right 4.188842e-03	k: 2744	n:680000
Cons ci ratio: 5.264134e-03	ci left: 4.479952e-01	ci right 4.503611e-01	k: 305441	n:680000
KS ci ratio: 1.017845e-01	ci left: 2.065664e-03	ci right 2.288611e-03	k: 1479	n:680000
WDR86   680000 perm   324 sec   (2100 perm/sec)   p_kst 2.175000e-03   p_cons 4.491779e-01   p_joint 4.035294e-03

Joint ci ratio: 7.429103e-02	ci left: 3.869500e-03	ci right 4.169471e-03	k: 2772	n:690000
Cons ci ratio: 5.226259e-03	ci left: 4.479650e-01	ci right 4.503137e-01	k: 309906	n:690000
KS ci ratio: 1.013071e-01	ci left: 2.055501e-03	ci right 2.276248e-03	k: 1493	n:690000
WDR86   690000 perm   332 sec   (2081 perm/sec)   p_kst 2.163768e-03   p_cons 4.491391e-01   p_joint 4.017391e-03

Joint ci ratio: 7.365587e-02	ci left: 3.881525e-03	ci right 4.179745e-03	k: 2820	n:700000
Cons ci ratio: 5.188426e-03	ci left: 4.480085e-01	ci right 4.503404e-01	k: 314422	n:700000
KS ci ratio: 1.004697e-01	ci left: 2.060950e-03	ci right 2.280345e-03	k: 1518	n:700000
WDR86   700000 perm   339 sec   (2063 perm/sec)   p_kst 2.168571e-03   p_cons 4.491743e-01   p_joint 4.028571e-03

Joint ci ratio: 7.321630e-02	ci left: 3.873863e-03	ci right 4.169643e-03	k: 2854	n:710000
Cons ci ratio: 5.151227e-03	ci left: 4.480678e-01	ci right 4.503833e-01	k: 318950	n:710000
KS ci ratio: 9.984739e-02	ci left: 2.058013e-03	ci right 2.275659e-03	k: 1537	n:710000
WDR86   710000 perm   347 sec   (2044 perm/sec)   p_kst 2.164789e-03   p_cons 4.492254e-01   p_joint 4.019718e-03

Outputting figure to mutsig2_images.part000000000190/WDR86.3_1155_710000_0.0021648_0.44923_0.0040197.png
                gene_name: WDR86
               theta_stop: 0.100 
                    nperm: 710000 
                     p_ks: 0.0022 
        ci_ks_bounds_left: 0.0021 
       ci_ks_bounds_right: 0.0023 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.0040 
     ci_joint_bounds_left: 0.0039 
    ci_joint_bounds_right: 0.0042 

Current progress: 69 percent done.
WASL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.988199e-02	ci left: 7.873578e-01	ci right 8.032698e-01	k: 7954	n:10000
Cons ci ratio: 4.273958e-02	ci left: 4.470006e-01	ci right 4.666246e-01	k: 4568	n:10000
KS ci ratio: 6.237935e-02	ci left: 2.741854e-01	ci right 2.919411e-01	k: 2830	n:10000
WASL   10000 perm   2 sec   (6513 perm/sec)   p_kst 2.830000e-01   p_cons 4.568000e-01   p_joint 7.954000e-01

Outputting figure to mutsig2_images.part000000000190/WASL.2_1562_10000_0.283_0.4568_0.7954.png
                gene_name: WASL
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 70 percent done.
WDR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.518634e-03	ci left: 9.607903e-01	ci right 9.681359e-01	k: 9646	n:10000
Cons ci ratio: 1.873938e-02	ci left: 8.062326e-01	ci right 8.215841e-01	k: 8140	n:10000
KS ci ratio: 4.828189e-02	ci left: 3.875906e-01	ci right 4.068693e-01	k: 3972	n:10000
WDR1   10000 perm   2 sec   (6092 perm/sec)   p_kst 3.972000e-01   p_cons 8.140000e-01   p_joint 9.646000e-01

Outputting figure to mutsig2_images.part000000000190/WDR1.2_1881_10000_0.3972_0.814_0.9646.png
                gene_name: WDR1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 72 percent done.
WDR19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.102425e-02	ci left: 2.831000e-01	ci right 3.010213e-01	k: 2920	n:10000
KS ci ratio: 2.126700e-02	ci left: 7.642560e-01	ci right 7.807849e-01	k: 7726	n:10000
WDR19   10000 perm   2 sec   (4891 perm/sec)   p_kst 7.726000e-01   p_cons 2.920000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000190/WDR19.2_4173_10000_0.7726_0.292_1.png
                gene_name: WDR19
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 74 percent done.
WDR25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.651866e-02	ci left: 5.254655e-01	ci right 5.451139e-01	k: 5353	n:10000
Cons ci ratio: 5.146020e-02	ci left: 3.576425e-01	ci right 3.766349e-01	k: 3671	n:10000
KS ci ratio: 4.824160e-02	ci left: 3.879889e-01	ci right 4.072708e-01	k: 3976	n:10000
WDR25   10000 perm   2 sec   (6521 perm/sec)   p_kst 3.976000e-01   p_cons 3.671000e-01   p_joint 5.353000e-01

Outputting figure to mutsig2_images.part000000000190/WDR25.2_1659_10000_0.3976_0.3671_0.5353.png
                gene_name: WDR25
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 76 percent done.
WDR26
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.194986e-02	ci left: 7.528195e-01	ci right 7.696281e-01	k: 7613	n:10000
Cons ci ratio: 3.537443e-02	ci left: 5.412878e-01	ci right 5.608824e-01	k: 5511	n:10000
KS ci ratio: 2.454756e-02	ci left: 7.093708e-01	ci right 7.271019e-01	k: 7183	n:10000
WDR26   10000 perm   2 sec   (5983 perm/sec)   p_kst 7.183000e-01   p_cons 5.511000e-01   p_joint 7.613000e-01

Outputting figure to mutsig2_images.part000000000190/WDR26.2_2042_10000_0.7183_0.5511_0.7613.png
                gene_name: WDR26
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 78 percent done.
WDR27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.962522e-02	ci left: 7.916175e-01	ci right 8.074076e-01	k: 7996	n:10000
KS ci ratio: 3.458089e-02	ci left: 5.525096e-01	ci right 5.720541e-01	k: 5623	n:10000
WDR27   10000 perm   2 sec   (5600 perm/sec)   p_kst 5.623000e-01   p_cons 7.996000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000190/WDR27.2_2670_10000_0.5623_0.7996_1.png
                gene_name: WDR27
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
WDR34
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.906652e-02	ci left: 6.357313e-01	ci right 6.545841e-01	k: 6452	n:10000
Cons ci ratio: 3.040660e-02	ci left: 6.147227e-01	ci right 6.338048e-01	k: 6243	n:10000
KS ci ratio: 8.487514e-02	ci left: 1.682863e-01	ci right 1.833030e-01	k: 1757	n:10000
WDR34   10000 perm   2 sec   (5693 perm/sec)   p_kst 1.757000e-01   p_cons 6.243000e-01   p_joint 6.452000e-01

Outputting figure to mutsig2_images.part000000000190/WDR34.2_1647_10000_0.1757_0.6243_0.6452.png
                gene_name: WDR34
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.65 

Current progress: 81 percent done.
WDR4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.984796e-02	ci left: 1.863882e-01	ci right 2.019904e-01	k: 1941	n:10000
KS ci ratio: 7.568707e-02	ci left: 2.034324e-01	ci right 2.195360e-01	k: 2114	n:10000
WDR4   10000 perm   2 sec   (6513 perm/sec)   p_kst 2.114000e-01   p_cons 1.941000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000190/WDR4.2_1283_10000_0.2114_0.1941_1.png
                gene_name: WDR4
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
WDR41
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.298919e-03	ci left: 9.422194e-01	ci right 9.511181e-01	k: 9468	n:10000
Cons ci ratio: 1.562761e-02	ci left: 8.560029e-01	ci right 8.695850e-01	k: 8629	n:10000
KS ci ratio: 5.403691e-02	ci left: 3.353812e-01	ci right 3.541093e-01	k: 3447	n:10000
WDR41   10000 perm   2 sec   (5997 perm/sec)   p_kst 3.447000e-01   p_cons 8.629000e-01   p_joint 9.468000e-01

Outputting figure to mutsig2_images.part000000000190/WDR41.2_1432_10000_0.3447_0.8629_0.9468.png
                gene_name: WDR41
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 85 percent done.
WDR45
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.789283e-02	ci left: 8.200516e-01	ci right 8.349571e-01	k: 8276	n:10000
KS ci ratio: 8.634954e-03	ci left: 9.495015e-01	ci right 9.578316e-01	k: 9538	n:10000
WDR45   10000 perm   2 sec   (6008 perm/sec)   p_kst 9.538000e-01   p_cons 8.276000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000190/WDR45.2_1126_10000_0.9538_0.8276_1.png
                gene_name: WDR45
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
WDR45L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.034997e-02	ci left: 9.298868e-01	ci right 9.396581e-01	k: 9349	n:10000
Cons ci ratio: 8.162590e-02	ci left: 1.796951e-01	ci right 1.950875e-01	k: 1873	n:10000
KS ci ratio: 4.462184e-02	ci left: 4.257520e-01	ci right 4.452856e-01	k: 4355	n:10000
WDR45L   10000 perm   2 sec   (6140 perm/sec)   p_kst 4.355000e-01   p_cons 1.873000e-01   p_joint 9.349000e-01

Outputting figure to mutsig2_images.part000000000190/WDR45L.2_1075_10000_0.4355_0.1873_0.9349.png
                gene_name: WDR45L
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 89 percent done.
WDR47
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.373042e-02	ci left: 7.230002e-01	ci right 7.404646e-01	k: 7318	n:10000
Cons ci ratio: 3.638676e-02	ci left: 5.272676e-01	ci right 5.469108e-01	k: 5371	n:10000
KS ci ratio: 4.735700e-02	ci left: 3.968515e-01	ci right 4.162030e-01	k: 4065	n:10000
WDR47   10000 perm   2 sec   (5353 perm/sec)   p_kst 4.065000e-01   p_cons 5.371000e-01   p_joint 7.318000e-01

Outputting figure to mutsig2_images.part000000000190/WDR47.2_2840_10000_0.4065_0.5371_0.7318.png
                gene_name: WDR47
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 91 percent done.
WDR54
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.096209e-02	ci left: 2.254342e-01	ci right 2.421211e-01	k: 2337	n:10000
Cons ci ratio: 2.066107e-02	ci left: 7.743839e-01	ci right 7.906512e-01	k: 7826	n:10000
KS ci ratio: 8.840551e-02	ci left: 1.569877e-01	ci right 1.716084e-01	k: 1642	n:10000
WDR54   10000 perm   2 sec   (6079 perm/sec)   p_kst 1.642000e-01   p_cons 7.826000e-01   p_joint 2.337000e-01

Outputting figure to mutsig2_images.part000000000190/WDR54.2_1041_10000_0.1642_0.7826_0.2337.png
                gene_name: WDR54
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 93 percent done.
WDR6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.072176e-02	ci left: 7.733708e-01	ci right 7.896649e-01	k: 7816	n:10000
Cons ci ratio: 6.820712e-03	ci left: 9.672044e-01	ci right 9.739177e-01	k: 9707	n:10000
KS ci ratio: 4.632269e-02	ci left: 4.075108e-01	ci right 4.269375e-01	k: 4172	n:10000
WDR6   10000 perm   2 sec   (5020 perm/sec)   p_kst 4.172000e-01   p_cons 9.707000e-01   p_joint 7.816000e-01

Outputting figure to mutsig2_images.part000000000190/WDR6.2_3480_10000_0.4172_0.9707_0.7816.png
                gene_name: WDR6
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 94 percent done.
WDR76
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.504075e-01	ci left: 5.879809e-02	ci right 6.845803e-02	k: 635	n:10000
Cons ci ratio: 1.265054e-01	ci left: 8.203252e-02	ci right 9.320908e-02	k: 875	n:10000
KS ci ratio: 6.604575e-02	ci left: 2.518194e-01	ci right 2.691203e-01	k: 2604	n:10000
WDR76   10000 perm   2 sec   (5830 perm/sec)   p_kst 2.604000e-01   p_cons 8.750000e-02   p_joint 6.350000e-02

Joint ci ratio: 5.576779e-02	ci left: 1.925459e-01	ci right 2.036420e-01	k: 3961	n:20000
Cons ci ratio: 8.457082e-02	ci left: 9.288305e-02	ci right 1.011345e-01	k: 1939	n:20000
KS ci ratio: 4.656276e-02	ci left: 2.555189e-01	ci right 2.677505e-01	k: 5232	n:20000
WDR76   20000 perm   4 sec   (5076 perm/sec)   p_kst 2.616000e-01   p_cons 9.695000e-02   p_joint 1.980500e-01

Outputting figure to mutsig2_images.part000000000190/WDR76.2_1933_20000_0.2616_0.09695_0.19805.png
                gene_name: WDR76
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.097 
      ci_cons_bounds_left: 0.093 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 96 percent done.
WDR85
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.693080e-03	ci left: 9.938690e-01	ci right 9.966303e-01	k: 9954	n:10000
Cons ci ratio: 1.530263e-02	ci left: 8.610043e-01	ci right 8.743807e-01	k: 8678	n:10000
KS ci ratio: 2.477813e-02	ci left: 7.055362e-01	ci right 7.233387e-01	k: 7145	n:10000
WDR85   10000 perm   2 sec   (6232 perm/sec)   p_kst 7.145000e-01   p_cons 8.678000e-01   p_joint 9.954000e-01

Outputting figure to mutsig2_images.part000000000190/WDR85.2_1395_10000_0.7145_0.8678_0.9954.png
                gene_name: WDR85
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1.00 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 1.00 

Current progress: 98 percent done.
WDYHV1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.597900e-02	ci left: 5.328747e-01	ci right 5.525004e-01	k: 5427	n:10000
Cons ci ratio: 9.166397e-02	ci left: 1.474675e-01	ci right 1.617343e-01	k: 1545	n:10000
KS ci ratio: 1.553508e-02	ci left: 8.574316e-01	ci right 8.709555e-01	k: 8643	n:10000
WDYHV1   10000 perm   1 sec   (6740 perm/sec)   p_kst 8.643000e-01   p_cons 1.545000e-01   p_joint 5.427000e-01

Outputting figure to mutsig2_images.part000000000190/WDYHV1.2_642_10000_0.8643_0.1545_0.5427.png
                gene_name: WDYHV1
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000190
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 190 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1703>
Subject: Job 8004693: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1703>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000191> was used as the working directory.
Started at Sun Nov 11 15:25:29 2012
Results reported at Sun Nov 11 15:34:10 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000191.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000191.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 191  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000191.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    557.64 sec.
    Max Memory :      4661 MB
    Max Swap   :      7237 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
191
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 191
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 191: processing genes 17190 - 17280
Calculating significance of each gene.
Using projection method.
17190	WFDC1	4.004174e-01
17191	WFDC10A	1
17192	WFDC10B	1
17193	WFDC11	5.649636e-02
17194	WFDC12	1
17195	WFDC13	1
17196	WFDC2	1
17197	WFDC3	1
17198	WFDC5	1
17199	WFDC6	1
17200	WFDC8	1.529064e-01
17201	WFDC9	1
17202	WFIKKN1	1
17203	WFIKKN2	5.172215e-01
17204	WFS1	8.839918e-01
17205	WHAMM	6.326005e-01
17206	WHSC1	9.966272e-01
17207	WHSC1L1	1.370543e-02
17208	WHSC2	3.586285e-01
17209	WIBG	1
17210	WIF1	7.146555e-03
17211	WIPF1	1.628152e-01
17212	WIPF2	2.123468e-01
17213	WIPF3	3.512161e-01
17214	WIPI1	7.821251e-01
17215	WIPI2	1
17216	WISP1	4.320601e-01
17217	WISP2	1
17218	WISP3	8.200699e-02
17219	WIZ	2.614334e-01
17220	WLS	1
17221	WNK1	9.998214e-01
17222	WNK2	9.767878e-01
17223	WNK3	9.434954e-01
17224	WNK4	8.687047e-01
17225	WNT1	6.628008e-01
17226	WNT10A	6.669515e-01
17227	WNT10B	5.538473e-02
17228	WNT11	5.716231e-01
17229	WNT16	1
17230	WNT2	1
17231	WNT2B	2.413214e-01
17232	WNT3	4.003188e-01
17233	WNT3A	4.021002e-01
17234	WNT4	1
17235	WNT5A	6.435875e-01
17236	WNT5B	1
17237	WNT6	1.366040e-01
17238	WNT7A	2.264241e-01
17239	WNT7B	7.859104e-01
17240	WNT8A	2.694809e-01
17241	WNT8B	1
17242	WNT9A	6.313384e-01
17243	WNT9B	5.461565e-01
17244	WRAP53	7.578511e-01
17245	WRB	1
17246	WRN	1
17247	WRNIP1	6.875490e-01
17248	WSB1	5.856569e-01
17249	WSB2	1
17250	WSCD1	2.164593e-01
17251	WSCD2	5.316801e-01
17252	WT1	1
17253	WTAP	3.144551e-01
17254	WTIP	4.377246e-01
17255	WWC1	4.693839e-01
17256	WWC2	6.893059e-01
17257	WWC3	6.731865e-01
17258	WWOX	5.268727e-01
17259	WWP1	6.571064e-01
17260	WWP2	8.798301e-01
17261	WWTR1	1
17262	XAB2	8.762163e-01
17263	XAF1	1
17264	XAGE3	9.026956e-02
17265	XAGE5	9.052785e-02
17266	XBP1	1
17267	XCL1	2.062875e-01
17268	XCL2	1
17269	XCR1	4.762206e-01
17270	XDH	9.378646e-02
17271	XG	1
17272	XIAP	3.383045e-02
17273	XIRP1	1
17274	XIRP2	1
17275	XK	2.110050e-01
17276	XKR3	1.652552e-01
17277	XKR4	2.476129e-01
17278	XKR5	3.416601e-01
17279	XKR6	1
17280	XKR7	3.650358e-01
Done

Running MutSig 2:
Scatter job 191: processing genes 17190 - 17280
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
XIRP2
Processing conservation and coverage...
81% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.040185e-01	ci left: 3.195912e-02	ci right 3.931460e-02	k: 355	n:10000
Cons ci ratio: 3.589212e-02	ci left: 5.340764e-01	ci right 5.536980e-01	k: 5439	n:10000
KS ci ratio: 4.113205e-01	ci left: 7.153353e-03	ci right 1.094096e-02	k: 89	n:10000
XIRP2   10000 perm   5 sec   (1971 perm/sec)   p_kst 8.900000e-03   p_cons 5.439000e-01   p_joint 3.550000e-02

Joint ci ratio: 1.767584e-01	ci left: 2.187547e-02	ci right 2.616445e-02	k: 479	n:20000
Cons ci ratio: 2.427804e-02	ci left: 5.589467e-01	ci right 5.727342e-01	k: 11317	n:20000
KS ci ratio: 2.892375e-01	ci left: 7.784307e-03	ci right 1.046133e-02	k: 181	n:20000
XIRP2   20000 perm   13 sec   (1495 perm/sec)   p_kst 9.050000e-03   p_cons 5.658500e-01   p_joint 2.395000e-02

Joint ci ratio: 1.343342e-01	ci left: 2.574314e-02	ci right 2.948243e-02	k: 827	n:30000
Cons ci ratio: 1.970727e-02	ci left: 5.631060e-01	ci right 5.743473e-01	k: 17062	n:30000
KS ci ratio: 2.278841e-01	ci left: 8.653395e-03	ci right 1.090973e-02	k: 292	n:30000
XIRP2   30000 perm   18 sec   (1675 perm/sec)   p_kst 9.733333e-03   p_cons 5.687333e-01   p_joint 2.756667e-02

Joint ci ratio: 1.302267e-01	ci left: 2.070581e-02	ci right 2.361413e-02	k: 885	n:40000
Cons ci ratio: 1.709879e-02	ci left: 5.629531e-01	ci right 5.726870e-01	k: 22713	n:40000
KS ci ratio: 1.970149e-01	ci left: 8.834070e-03	ci right 1.078808e-02	k: 391	n:40000
XIRP2   40000 perm   23 sec   (1764 perm/sec)   p_kst 9.775000e-03   p_cons 5.678250e-01   p_joint 2.212500e-02

Joint ci ratio: 8.918537e-02	ci left: 3.553851e-02	ci right 3.887550e-02	k: 1859	n:50000
Cons ci ratio: 1.527332e-02	ci left: 5.641248e-01	ci right 5.728272e-01	k: 28424	n:50000
KS ci ratio: 1.762160e-01	ci left: 8.935976e-03	ci right 1.068164e-02	k: 489	n:50000
XIRP2   50000 perm   27 sec   (1832 perm/sec)   p_kst 9.780000e-03   p_cons 5.684800e-01   p_joint 3.718000e-02

Joint ci ratio: 9.798121e-02	ci left: 2.470877e-02	ci right 2.727069e-02	k: 1558	n:60000
Cons ci ratio: 1.395437e-02	ci left: 5.640916e-01	ci right 5.720351e-01	k: 34084	n:60000
KS ci ratio: 1.632631e-01	ci left: 8.739285e-03	ci right 1.030871e-02	k: 570	n:60000
XIRP2   60000 perm   32 sec   (1878 perm/sec)   p_kst 9.500000e-03   p_cons 5.680667e-01   p_joint 2.596667e-02

Joint ci ratio: 8.263895e-02	ci left: 2.985439e-02	ci right 3.244181e-02	k: 2179	n:70000
Cons ci ratio: 1.293307e-02	ci left: 5.638629e-01	ci right 5.712172e-01	k: 39728	n:70000
KS ci ratio: 1.500384e-01	ci left: 8.932165e-03	ci right 1.039463e-02	k: 675	n:70000
XIRP2   70000 perm   37 sec   (1908 perm/sec)   p_kst 9.642857e-03   p_cons 5.675429e-01   p_joint 3.112857e-02

Joint ci ratio: 8.615393e-02	ci left: 2.413715e-02	ci right 2.632246e-02	k: 2017	n:80000
Cons ci ratio: 1.211458e-02	ci left: 5.634202e-01	ci right 5.702999e-01	k: 45349	n:80000
KS ci ratio: 1.422734e-01	ci left: 8.730853e-03	ci right 1.008008e-02	k: 751	n:80000
XIRP2   80000 perm   42 sec   (1928 perm/sec)   p_kst 9.387500e-03   p_cons 5.668625e-01   p_joint 2.521250e-02

Joint ci ratio: 7.523865e-02	ci left: 2.817511e-02	ci right 3.038870e-02	k: 2634	n:90000
Cons ci ratio: 1.140745e-02	ci left: 5.642334e-01	ci right 5.707178e-01	k: 51073	n:90000
KS ci ratio: 1.289301e-01	ci left: 9.510794e-03	ci right 1.083218e-02	k: 914	n:90000
XIRP2   90000 perm   46 sec   (1940 perm/sec)   p_kst 1.015556e-02   p_cons 5.674778e-01   p_joint 2.926667e-02

Joint ci ratio: 7.100106e-02	ci left: 2.852874e-02	ci right 3.063866e-02	k: 2957	n:100000
Cons ci ratio: 1.082798e-02	ci left: 5.641322e-01	ci right 5.702839e-01	k: 56721	n:100000
KS ci ratio: 1.228439e-01	ci left: 9.460421e-03	ci right 1.070824e-02	k: 1007	n:100000
XIRP2   100000 perm   51 sec   (1947 perm/sec)   p_kst 1.007000e-02   p_cons 5.672100e-01   p_joint 2.957000e-02

Joint ci ratio: 6.598006e-02	ci left: 3.006412e-02	ci right 3.212434e-02	k: 3419	n:110000
Cons ci ratio: 1.032066e-02	ci left: 5.644386e-01	ci right 5.703033e-01	k: 62411	n:110000
KS ci ratio: 1.169568e-01	ci left: 9.517507e-03	ci right 1.070854e-02	k: 1111	n:110000
XIRP2   110000 perm   56 sec   (1951 perm/sec)   p_kst 1.010000e-02   p_cons 5.673727e-01   p_joint 3.108182e-02

Joint ci ratio: 7.104591e-02	ci left: 2.386193e-02	ci right 2.562781e-02	k: 2968	n:120000
Cons ci ratio: 9.880575e-03	ci left: 5.645994e-01	ci right 5.702140e-01	k: 68089	n:120000
KS ci ratio: 1.124511e-01	ci left: 9.460944e-03	ci right 1.059626e-02	k: 1202	n:120000
XIRP2   120000 perm   61 sec   (1952 perm/sec)   p_kst 1.001667e-02   p_cons 5.674083e-01   p_joint 2.473333e-02

Joint ci ratio: 6.156140e-02	ci left: 2.931424e-02	ci right 3.118372e-02	k: 3931	n:130000
Cons ci ratio: 9.489995e-03	ci left: 5.648632e-01	ci right 5.702569e-01	k: 73783	n:130000
KS ci ratio: 1.080500e-01	ci left: 9.481206e-03	ci right 1.057159e-02	k: 1302	n:130000
XIRP2   130000 perm   67 sec   (1949 perm/sec)   p_kst 1.001538e-02   p_cons 5.675615e-01   p_joint 3.023846e-02

Joint ci ratio: 6.361339e-02	ci left: 2.556645e-02	ci right 2.725324e-02	k: 3696	n:140000
Cons ci ratio: 9.144078e-03	ci left: 5.650000e-01	ci right 5.701972e-01	k: 79464	n:140000
KS ci ratio: 1.040160e-01	ci left: 9.520193e-03	ci right 1.057168e-02	k: 1405	n:140000
XIRP2   140000 perm   72 sec   (1946 perm/sec)   p_kst 1.003571e-02   p_cons 5.676000e-01   p_joint 2.640000e-02

Joint ci ratio: 5.943763e-02	ci left: 2.734176e-02	ci right 2.902321e-02	k: 4226	n:150000
Cons ci ratio: 8.829105e-03	ci left: 5.653618e-01	ci right 5.703822e-01	k: 85181	n:150000
KS ci ratio: 1.008422e-01	ci left: 9.470130e-03	ci right 1.048228e-02	k: 1495	n:150000
XIRP2   150000 perm   77 sec   (1942 perm/sec)   p_kst 9.966667e-03   p_cons 5.678733e-01   p_joint 2.817333e-02

Joint ci ratio: 5.857278e-02	ci left: 2.643305e-02	ci right 2.803415e-02	k: 4356	n:160000
Cons ci ratio: 8.556669e-03	ci left: 5.649868e-01	ci right 5.698482e-01	k: 90787	n:160000
KS ci ratio: 9.772463e-02	ci left: 9.469444e-03	ci right 1.044844e-02	k: 1592	n:160000
XIRP2   160000 perm   83 sec   (1935 perm/sec)   p_kst 9.950000e-03   p_cons 5.674187e-01   p_joint 2.722500e-02

Outputting figure to mutsig2_images.part000000000191/XIRP2.48_12236_160000_0.00995_0.56742_0.027225.png
                gene_name: XIRP2
               theta_stop: 0.098 
                    nperm: 160000 
                     p_ks: 0.0100 
        ci_ks_bounds_left: 0.0095 
       ci_ks_bounds_right: 0.010 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.027 
     ci_joint_bounds_left: 0.026 
    ci_joint_bounds_right: 0.028 

Current progress: 2 percent done.
WNK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.307221e-02	ci left: 7.340122e-01	ci right 7.512462e-01	k: 7427	n:10000
Cons ci ratio: 2.549010e-02	ci left: 6.937343e-01	ci right 7.117474e-01	k: 7028	n:10000
KS ci ratio: 4.309433e-02	ci left: 4.429091e-01	ci right 4.625185e-01	k: 4527	n:10000
WNK1   10000 perm   3 sec   (3415 perm/sec)   p_kst 4.527000e-01   p_cons 7.028000e-01   p_joint 7.427000e-01

Outputting figure to mutsig2_images.part000000000191/WNK1.18_8763_10000_0.4527_0.7028_0.7427.png
                gene_name: WNK1
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 4 percent done.
WHSC1L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.758897e-02	ci left: 5.110539e-01	ci right 5.307340e-01	k: 5209	n:10000
Cons ci ratio: 5.424083e-02	ci left: 3.336927e-01	ci right 3.523989e-01	k: 3430	n:10000
KS ci ratio: 3.602251e-02	ci left: 5.322739e-01	ci right 5.519016e-01	k: 5421	n:10000
WHSC1L1   10000 perm   2 sec   (4360 perm/sec)   p_kst 5.421000e-01   p_cons 3.430000e-01   p_joint 5.209000e-01

Outputting figure to mutsig2_images.part000000000191/WHSC1L1.16_4493_10000_0.5421_0.343_0.5209.png
                gene_name: WHSC1L1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 6 percent done.
XDH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.500499e-02	ci left: 4.215643e-01	ci right 4.410757e-01	k: 4313	n:10000
Cons ci ratio: 8.686029e-02	ci left: 1.618004e-01	ci right 1.765928e-01	k: 1691	n:10000
KS ci ratio: 3.209660e-02	ci left: 5.889150e-01	ci right 6.082275e-01	k: 5986	n:10000
XDH   10000 perm   2 sec   (4388 perm/sec)   p_kst 5.986000e-01   p_cons 1.691000e-01   p_joint 4.313000e-01

Outputting figure to mutsig2_images.part000000000191/XDH.10_4146_10000_0.5986_0.1691_0.4313.png
                gene_name: XDH
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 8 percent done.
WNK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.259349e-02	ci left: 4.486973e-01	ci right 4.683269e-01	k: 4585	n:10000
Cons ci ratio: 7.363793e-02	ci left: 2.126039e-01	ci right 2.289591e-01	k: 2207	n:10000
KS ci ratio: 4.944042e-02	ci left: 3.763431e-01	ci right 3.955234e-01	k: 3859	n:10000
WNK3   10000 perm   2 sec   (4557 perm/sec)   p_kst 3.859000e-01   p_cons 2.207000e-01   p_joint 4.585000e-01

Outputting figure to mutsig2_images.part000000000191/WNK3.9_5495_10000_0.3859_0.2207_0.4585.png
                gene_name: WNK3
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 10 percent done.
XIRP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.633221e-02	ci left: 4.074111e-01	ci right 4.268372e-01	k: 4171	n:10000
Cons ci ratio: 5.157110e-02	ci left: 3.566483e-01	ci right 3.756298e-01	k: 3661	n:10000
KS ci ratio: 5.844174e-02	ci left: 3.011400e-01	ci right 3.193706e-01	k: 3102	n:10000
XIRP1   10000 perm   2 sec   (4806 perm/sec)   p_kst 3.102000e-01   p_cons 3.661000e-01   p_joint 4.171000e-01

Outputting figure to mutsig2_images.part000000000191/XIRP1.6_5536_10000_0.3102_0.3661_0.4171.png
                gene_name: XIRP1
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 12 percent done.
XKR4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.166482e-02	ci left: 2.788403e-01	ci right 2.966835e-01	k: 2877	n:10000
Cons ci ratio: 9.541650e-02	ci left: 1.374671e-01	ci right 1.513407e-01	k: 1443	n:10000
KS ci ratio: 4.122148e-02	ci left: 4.649712e-01	ci right 4.846435e-01	k: 4748	n:10000
XKR4   10000 perm   2 sec   (5774 perm/sec)   p_kst 4.748000e-01   p_cons 1.443000e-01   p_joint 2.877000e-01

Outputting figure to mutsig2_images.part000000000191/XKR4.6_1965_10000_0.4748_0.1443_0.2877.png
                gene_name: XKR4
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 14 percent done.
WFIKKN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.971560e-02	ci left: 1.530607e-01	ci right 1.675377e-01	k: 1602	n:10000
Cons ci ratio: 1.096501e-02	ci left: 9.222420e-01	ci right 9.325074e-01	k: 9275	n:10000
KS ci ratio: 1.141993e-01	ci left: 9.934967e-02	ci right 1.114813e-01	k: 1053	n:10000
WFIKKN2   10000 perm   2 sec   (6459 perm/sec)   p_kst 1.053000e-01   p_cons 9.275000e-01   p_joint 1.602000e-01

Joint ci ratio: 6.163978e-02	ci left: 1.629902e-01	ci right 1.734064e-01	k: 3363	n:20000
Cons ci ratio: 8.021848e-03	ci left: 9.189630e-01	ci right 9.264135e-01	k: 18455	n:20000
KS ci ratio: 8.204196e-02	ci left: 9.823132e-02	ci right 1.066847e-01	k: 2048	n:20000
WFIKKN2   20000 perm   3 sec   (5743 perm/sec)   p_kst 1.024000e-01   p_cons 9.227500e-01   p_joint 1.681500e-01

Outputting figure to mutsig2_images.part000000000191/WFIKKN2.5_1739_20000_0.1024_0.92275_0.16815.png
                gene_name: WFIKKN2
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.098 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 16 percent done.
WIF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.265846e-01	ci left: 8.193541e-02	ci right 9.310624e-02	k: 874	n:10000
Cons ci ratio: 1.699685e-01	ci left: 4.619368e-02	ci right 5.487054e-02	k: 504	n:10000
KS ci ratio: 1.211965e-01	ci left: 8.893260e-02	ci right 1.005047e-01	k: 946	n:10000
WIF1   10000 perm   2 sec   (5369 perm/sec)   p_kst 9.460000e-02   p_cons 5.040000e-02   p_joint 8.740000e-02

Joint ci ratio: 1.047389e-01	ci left: 6.201199e-02	ci right 6.891500e-02	k: 1308	n:20000
Cons ci ratio: 1.196902e-01	ci left: 4.784576e-02	ci right 5.398563e-02	k: 1017	n:20000
KS ci ratio: 8.887212e-02	ci left: 8.469674e-02	ci right 9.262332e-02	k: 1772	n:20000
WIF1   20000 perm   4 sec   (5183 perm/sec)   p_kst 8.860000e-02   p_cons 5.085000e-02   p_joint 6.540000e-02

Joint ci ratio: 1.132021e-01	ci left: 3.625368e-02	ci right 4.063629e-02	k: 1152	n:30000
Cons ci ratio: 9.776107e-02	ci left: 4.837465e-02	ci right 5.337945e-02	k: 1525	n:30000
KS ci ratio: 7.269181e-02	ci left: 8.514544e-02	ci right 9.160121e-02	k: 2650	n:30000
WIF1   30000 perm   6 sec   (5034 perm/sec)   p_kst 8.833333e-02   p_cons 5.083333e-02   p_joint 3.840000e-02

Joint ci ratio: 8.136045e-02	ci left: 5.261406e-02	ci right 5.710083e-02	k: 2193	n:40000
Cons ci ratio: 8.015004e-02	ci left: 5.415902e-02	ci right 5.870564e-02	k: 2256	n:40000
KS ci ratio: 6.099213e-02	ci left: 9.073801e-02	ci right 9.647115e-02	k: 3743	n:40000
WIF1   40000 perm   8 sec   (4919 perm/sec)   p_kst 9.357500e-02   p_cons 5.640000e-02   p_joint 5.482500e-02

Outputting figure to mutsig2_images.part000000000191/WIF1.5_1180_40000_0.093575_0.0564_0.054825.png
                gene_name: WIF1
               theta_stop: 0.081 
                    nperm: 40000 
                     p_ks: 0.094 
        ci_ks_bounds_left: 0.091 
       ci_ks_bounds_right: 0.096 
                   p_cons: 0.056 
      ci_cons_bounds_left: 0.054 
     ci_cons_bounds_right: 0.059 
                  p_joint: 0.055 
     ci_joint_bounds_left: 0.053 
    ci_joint_bounds_right: 0.057 

Current progress: 18 percent done.
WIZ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.285046e-02	ci left: 3.454159e-01	ci right 3.642687e-01	k: 3548	n:10000
Cons ci ratio: 7.254263e-02	ci left: 2.177347e-01	ci right 2.342252e-01	k: 2259	n:10000
KS ci ratio: 5.214247e-02	ci left: 3.515781e-01	ci right 3.705029e-01	k: 3610	n:10000
WIZ   10000 perm   2 sec   (5805 perm/sec)   p_kst 3.610000e-01   p_cons 2.259000e-01   p_joint 3.548000e-01

Outputting figure to mutsig2_images.part000000000191/WIZ.5_2413_10000_0.361_0.2259_0.3548.png
                gene_name: WIZ
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 20 percent done.
WRN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.155724e-02	ci left: 7.593970e-01	ci right 7.760468e-01	k: 7678	n:10000
Cons ci ratio: 4.448599e-02	ci left: 4.272478e-01	ci right 4.467889e-01	k: 4370	n:10000
KS ci ratio: 2.341025e-02	ci left: 7.283538e-01	ci right 7.457079e-01	k: 7371	n:10000
WRN   10000 perm   2 sec   (4882 perm/sec)   p_kst 7.371000e-01   p_cons 4.370000e-01   p_joint 7.678000e-01

Outputting figure to mutsig2_images.part000000000191/WRN.5_4435_10000_0.7371_0.437_0.7678.png
                gene_name: WRN
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 22 percent done.
WWC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.483523e-02	ci left: 2.071791e-01	ci right 2.233870e-01	k: 2152	n:10000
Cons ci ratio: 2.103697e-02	ci left: 7.681038e-01	ci right 7.845349e-01	k: 7764	n:10000
KS ci ratio: 1.130635e-01	ci left: 1.012015e-01	ci right 1.134283e-01	k: 1072	n:10000
WWC1   10000 perm   2 sec   (5051 perm/sec)   p_kst 1.072000e-01   p_cons 7.764000e-01   p_joint 2.152000e-01

Joint ci ratio: 5.122272e-02	ci left: 2.206646e-01	ci right 2.323150e-01	k: 4529	n:20000
Cons ci ratio: 1.511714e-02	ci left: 7.648602e-01	ci right 7.765610e-01	k: 15415	n:20000
KS ci ratio: 7.992864e-02	ci left: 1.030430e-01	ci right 1.116715e-01	k: 2146	n:20000
WWC1   20000 perm   4 sec   (4580 perm/sec)   p_kst 1.073000e-01   p_cons 7.707500e-01   p_joint 2.264500e-01

Outputting figure to mutsig2_images.part000000000191/WWC1.5_3452_20000_0.1073_0.77075_0.22645.png
                gene_name: WWC1
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 24 percent done.
XIAP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.963134e-02	ci left: 7.915161e-01	ci right 8.073091e-01	k: 7995	n:10000
KS ci ratio: 1.864034e-02	ci left: 8.078575e-01	ci right 8.231582e-01	k: 8156	n:10000
XIAP   10000 perm   2 sec   (6001 perm/sec)   p_kst 8.156000e-01   p_cons 7.995000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000191/XIAP.5_1518_10000_0.8156_0.7995_1.png
                gene_name: XIAP
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 26 percent done.
WIPF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.071259e-02	ci left: 4.711640e-01	ci right 4.908471e-01	k: 4810	n:10000
Cons ci ratio: 2.874988e-02	ci left: 6.407601e-01	ci right 6.595523e-01	k: 6502	n:10000
KS ci ratio: 5.986431e-02	ci left: 2.910276e-01	ci right 3.090890e-01	k: 3000	n:10000
WIPF1   10000 perm   2 sec   (6030 perm/sec)   p_kst 3.000000e-01   p_cons 6.502000e-01   p_joint 4.810000e-01

Outputting figure to mutsig2_images.part000000000191/WIPF1.4_1540_10000_0.3_0.6502_0.481.png
                gene_name: WIPF1
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 28 percent done.
WIPF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.555655e-01	ci left: 5.503869e-02	ci right 6.441983e-02	k: 596	n:10000
Cons ci ratio: 7.591471e-02	ci left: 2.024465e-01	ci right 2.185225e-01	k: 2104	n:10000
KS ci ratio: 1.706816e-01	ci left: 4.580994e-02	ci right 5.445453e-02	k: 500	n:10000
WIPF2   10000 perm   2 sec   (5981 perm/sec)   p_kst 5.000000e-02   p_cons 2.104000e-01   p_joint 5.960000e-02

Joint ci ratio: 1.122713e-01	ci left: 5.421584e-02	ci right 6.071357e-02	k: 1148	n:20000
Cons ci ratio: 5.380185e-02	ci left: 2.040756e-01	ci right 2.154089e-01	k: 4194	n:20000
KS ci ratio: 1.200634e-01	ci left: 4.755432e-02	ci right 5.367717e-02	k: 1011	n:20000
WIPF2   20000 perm   4 sec   (5416 perm/sec)   p_kst 5.055000e-02   p_cons 2.097000e-01   p_joint 5.740000e-02

Joint ci ratio: 7.910089e-02	ci left: 7.266583e-02	ci right 7.868332e-02	k: 2269	n:30000
Cons ci ratio: 4.390933e-02	ci left: 2.052703e-01	ci right 2.145193e-01	k: 6296	n:30000
KS ci ratio: 9.749212e-02	ci left: 4.863513e-02	ci right 5.365225e-02	k: 1533	n:30000
WIPF2   30000 perm   6 sec   (5154 perm/sec)   p_kst 5.110000e-02   p_cons 2.098667e-01   p_joint 7.563333e-02

Outputting figure to mutsig2_images.part000000000191/WIPF2.4_1351_30000_0.0511_0.20987_0.075633.png
                gene_name: WIPF2
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.051 
        ci_ks_bounds_left: 0.049 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.076 
     ci_joint_bounds_left: 0.073 
    ci_joint_bounds_right: 0.079 

Current progress: 30 percent done.
WISP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.149343e-02	ci left: 3.573442e-01	ci right 3.763334e-01	k: 3668	n:10000
Cons ci ratio: 5.829190e-02	ci left: 3.022309e-01	ci right 3.204791e-01	k: 3113	n:10000
KS ci ratio: 5.807515e-02	ci left: 3.038177e-01	ci right 3.220914e-01	k: 3129	n:10000
WISP3   10000 perm   2 sec   (6221 perm/sec)   p_kst 3.129000e-01   p_cons 3.113000e-01   p_joint 3.668000e-01

Outputting figure to mutsig2_images.part000000000191/WISP3.4_1139_10000_0.3129_0.3113_0.3668.png
                gene_name: WISP3
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 32 percent done.
WNT10B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.844806e-02	ci left: 8.110065e-01	ci right 8.262075e-01	k: 8187	n:10000
Cons ci ratio: 6.248709e-02	ci left: 2.734923e-01	ci right 2.912347e-01	k: 2823	n:10000
KS ci ratio: 7.363547e-03	ci left: 9.622595e-01	ci right 9.694658e-01	k: 9660	n:10000
WNT10B   10000 perm   2 sec   (6128 perm/sec)   p_kst 9.660000e-01   p_cons 2.823000e-01   p_joint 8.187000e-01

Outputting figure to mutsig2_images.part000000000191/WNT10B.4_1186_10000_0.966_0.2823_0.8187.png
                gene_name: WNT10B
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 34 percent done.
WSCD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.787107e-02	ci left: 3.916729e-01	ci right 4.109846e-01	k: 4013	n:10000
Cons ci ratio: 1.118988e-01	ci left: 1.031515e-01	ci right 1.154771e-01	k: 1092	n:10000
KS ci ratio: 1.528263e-02	ci left: 8.613106e-01	ci right 8.746743e-01	k: 8681	n:10000
WSCD1   10000 perm   2 sec   (6245 perm/sec)   p_kst 8.681000e-01   p_cons 1.092000e-01   p_joint 4.013000e-01

Joint ci ratio: 3.606499e-02	ci left: 3.645981e-01	ci right 3.780394e-01	k: 7426	n:20000
Cons ci ratio: 7.862204e-02	ci left: 1.061869e-01	ci right 1.149267e-01	k: 2210	n:20000
KS ci ratio: 1.077248e-02	ci left: 8.640423e-01	ci right 8.734502e-01	k: 17376	n:20000
WSCD1   20000 perm   4 sec   (5569 perm/sec)   p_kst 8.688000e-01   p_cons 1.105000e-01   p_joint 3.713000e-01

Outputting figure to mutsig2_images.part000000000191/WSCD1.4_1760_20000_0.8688_0.1105_0.3713.png
                gene_name: WSCD1
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 36 percent done.
WT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.083148e-02	ci left: 1.498222e-01	ci right 1.641783e-01	k: 1569	n:10000
Cons ci ratio: 3.712477e-02	ci left: 5.172579e-01	ci right 5.369263e-01	k: 5271	n:10000
KS ci ratio: 1.108203e-01	ci left: 1.050046e-01	ci right 1.174229e-01	k: 1111	n:10000
WT1   10000 perm   2 sec   (6306 perm/sec)   p_kst 1.111000e-01   p_cons 5.271000e-01   p_joint 1.569000e-01

Joint ci ratio: 5.437644e-02	ci left: 2.006110e-01	ci right 2.118745e-01	k: 4124	n:20000
Cons ci ratio: 2.632945e-02	ci left: 5.187013e-01	ci right 5.325912e-01	k: 10513	n:20000
KS ci ratio: 7.822483e-02	ci left: 1.071696e-01	ci right 1.159437e-01	k: 2230	n:20000
WT1   20000 perm   4 sec   (5641 perm/sec)   p_kst 1.115000e-01   p_cons 5.256500e-01   p_joint 2.062000e-01

Outputting figure to mutsig2_images.part000000000191/WT1.4_1594_20000_0.1115_0.52565_0.2062.png
                gene_name: WT1
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 38 percent done.
WWC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.094156e-02	ci left: 4.683670e-01	ci right 4.880457e-01	k: 4782	n:10000
Cons ci ratio: 1.235153e-01	ci left: 8.582142e-02	ci right 9.721783e-02	k: 914	n:10000
KS ci ratio: 6.026393e-03	ci left: 9.738693e-01	ci right 9.798485e-01	k: 9770	n:10000
WWC3   10000 perm   2 sec   (5239 perm/sec)   p_kst 9.770000e-01   p_cons 9.140000e-02   p_joint 4.782000e-01

Joint ci ratio: 3.083404e-02	ci left: 4.399928e-01	ci right 4.538226e-01	k: 8938	n:20000
Cons ci ratio: 8.710467e-02	ci left: 8.793086e-02	ci right 9.598822e-02	k: 1838	n:20000
KS ci ratio: 4.204837e-03	ci left: 9.754011e-01	ci right 9.795585e-01	k: 19551	n:20000
WWC3   20000 perm   4 sec   (4758 perm/sec)   p_kst 9.775500e-01   p_cons 9.190000e-02   p_joint 4.469000e-01

Outputting figure to mutsig2_images.part000000000191/WWC3.4_3367_20000_0.97755_0.0919_0.4469.png
                gene_name: WWC3
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.092 
      ci_cons_bounds_left: 0.088 
     ci_cons_bounds_right: 0.096 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.45 

Current progress: 40 percent done.
WNK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.679726e-02	ci left: 8.376546e-01	ci right 8.519439e-01	k: 8449	n:10000
Cons ci ratio: 3.569727e-02	ci left: 5.367804e-01	ci right 5.563924e-01	k: 5466	n:10000
KS ci ratio: 3.270783e-02	ci left: 5.797835e-01	ci right 5.991643e-01	k: 5895	n:10000
WNK4   10000 perm   2 sec   (5376 perm/sec)   p_kst 5.895000e-01   p_cons 5.466000e-01   p_joint 8.449000e-01

Outputting figure to mutsig2_images.part000000000191/WNK4.3_3808_10000_0.5895_0.5466_0.8449.png
                gene_name: WNK4
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 42 percent done.
WNT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.287355e-02	ci left: 3.452172e-01	ci right 3.640676e-01	k: 3546	n:10000
Cons ci ratio: 4.803081e-02	ci left: 3.900798e-01	ci right 4.093787e-01	k: 3997	n:10000
KS ci ratio: 6.486675e-02	ci left: 2.587439e-01	ci right 2.761918e-01	k: 2674	n:10000
WNT2   10000 perm   2 sec   (6479 perm/sec)   p_kst 2.674000e-01   p_cons 3.997000e-01   p_joint 3.546000e-01

Outputting figure to mutsig2_images.part000000000191/WNT2.3_1103_10000_0.2674_0.3997_0.3546.png
                gene_name: WNT2
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 44 percent done.
WNT2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.010154e-02	ci left: 2.297793e-01	ci right 2.465735e-01	k: 2381	n:10000
Cons ci ratio: 3.640872e-02	ci left: 5.269672e-01	ci right 5.466113e-01	k: 5368	n:10000
KS ci ratio: 7.798399e-02	ci left: 1.937745e-01	ci right 2.095997e-01	k: 2016	n:10000
WNT2B   10000 perm   2 sec   (6212 perm/sec)   p_kst 2.016000e-01   p_cons 5.368000e-01   p_joint 2.381000e-01

Outputting figure to mutsig2_images.part000000000191/WNT2B.3_1329_10000_0.2016_0.5368_0.2381.png
                gene_name: WNT2B
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 46 percent done.
WNT7A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.978118e-02	ci left: 6.244707e-01	ci right 6.434512e-01	k: 6340	n:10000
Cons ci ratio: 7.894111e-02	ci left: 1.899330e-01	ci right 2.056434e-01	k: 1977	n:10000
KS ci ratio: 1.736385e-02	ci left: 8.285951e-01	ci right 8.432086e-01	k: 8360	n:10000
WNT7A   10000 perm   2 sec   (6519 perm/sec)   p_kst 8.360000e-01   p_cons 1.977000e-01   p_joint 6.340000e-01

Outputting figure to mutsig2_images.part000000000191/WNT7A.3_1066_10000_0.836_0.1977_0.634.png
                gene_name: WNT7A
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 48 percent done.
WWC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.127917e-02	ci left: 1.809743e-01	ci right 1.964075e-01	k: 1886	n:10000
Cons ci ratio: 5.735389e-02	ci left: 3.091742e-01	ci right 3.275318e-01	k: 3183	n:10000
KS ci ratio: 2.102203e-01	ci left: 3.005970e-02	ci right 3.721534e-02	k: 335	n:10000
WWC2   10000 perm   2 sec   (5296 perm/sec)   p_kst 3.350000e-02   p_cons 3.183000e-01   p_joint 1.886000e-01

Joint ci ratio: 1.009921e-01	ci left: 6.650160e-02	ci right 7.362401e-02	k: 1400	n:20000
Cons ci ratio: 4.085629e-02	ci left: 3.087137e-01	ci right 3.216401e-01	k: 6303	n:20000
KS ci ratio: 1.533170e-01	ci left: 2.921889e-02	ci right 3.411851e-02	k: 632	n:20000
WWC2   20000 perm   4 sec   (4752 perm/sec)   p_kst 3.160000e-02   p_cons 3.151500e-01   p_joint 7.000000e-02

Joint ci ratio: 1.088567e-01	ci left: 3.917357e-02	ci right 4.371578e-02	k: 1242	n:30000
Cons ci ratio: 3.320001e-02	ci left: 3.119682e-01	ci right 3.225339e-01	k: 9517	n:30000
KS ci ratio: 1.260431e-01	ci left: 2.926149e-02	ci right 3.322998e-02	k: 936	n:30000
WWC2   30000 perm   7 sec   (4553 perm/sec)   p_kst 3.120000e-02   p_cons 3.172333e-01   p_joint 4.140000e-02

Joint ci ratio: 9.950387e-02	ci left: 3.548853e-02	ci right 3.922902e-02	k: 1493	n:40000
Cons ci ratio: 2.872996e-02	ci left: 3.130137e-01	ci right 3.221628e-01	k: 12703	n:40000
KS ci ratio: 1.086790e-01	ci left: 2.978556e-02	ci right 3.323290e-02	k: 1259	n:40000
WWC2   40000 perm   9 sec   (4416 perm/sec)   p_kst 3.147500e-02   p_cons 3.175750e-01   p_joint 3.732500e-02

Joint ci ratio: 8.242253e-02	ci left: 4.149335e-02	ci right 4.507992e-02	k: 2163	n:50000
Cons ci ratio: 2.565305e-02	ci left: 3.142376e-01	ci right 3.224235e-01	k: 15916	n:50000
KS ci ratio: 9.726944e-02	ci left: 2.992769e-02	ci right 3.300703e-02	k: 1572	n:50000
WWC2   50000 perm   12 sec   (4308 perm/sec)   p_kst 3.144000e-02   p_cons 3.183200e-01   p_joint 4.326000e-02

Outputting figure to mutsig2_images.part000000000191/WWC2.3_3671_50000_0.03144_0.31832_0.04326.png
                gene_name: WWC2
               theta_stop: 0.097 
                    nperm: 50000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.030 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.043 
     ci_joint_bounds_left: 0.041 
    ci_joint_bounds_right: 0.045 

Current progress: 50 percent done.
WWP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.189885e-01	ci left: 9.204578e-02	ci right 1.037896e-01	k: 978	n:10000
Cons ci ratio: 3.817613e-03	ci left: 9.886188e-01	ci right 9.924873e-01	k: 9907	n:10000
KS ci ratio: 2.408683e-01	ci left: 2.268733e-02	ci right 2.899301e-02	k: 257	n:10000
WWP1   10000 perm   2 sec   (5573 perm/sec)   p_kst 2.570000e-02   p_cons 9.907000e-01   p_joint 9.780000e-02

Joint ci ratio: 1.618303e-01	ci left: 2.618962e-02	ci right 3.084880e-02	k: 569	n:20000
Cons ci ratio: 2.799507e-03	ci left: 9.884691e-01	ci right 9.912858e-01	k: 19799	n:20000
KS ci ratio: 1.716948e-01	ci left: 2.321577e-02	ci right 2.762368e-02	k: 507	n:20000
WWP1   20000 perm   4 sec   (5038 perm/sec)   p_kst 2.535000e-02   p_cons 9.899500e-01   p_joint 2.845000e-02

Joint ci ratio: 1.359467e-01	ci left: 2.513068e-02	ci right 2.882836e-02	k: 808	n:30000
Cons ci ratio: 2.243592e-03	ci left: 9.891255e-01	ci right 9.913780e-01	k: 29709	n:30000
KS ci ratio: 1.428069e-01	ci left: 2.274795e-02	ci right 2.627829e-02	k: 734	n:30000
WWP1   30000 perm   6 sec   (4804 perm/sec)   p_kst 2.446667e-02   p_cons 9.903000e-01   p_joint 2.693333e-02

Joint ci ratio: 1.181094e-01	ci left: 2.521499e-02	ci right 2.840421e-02	k: 1071	n:40000
Cons ci ratio: 1.942208e-03	ci left: 9.892906e-01	ci right 9.912373e-01	k: 39612	n:40000
KS ci ratio: 1.238044e-01	ci left: 2.293435e-02	ci right 2.598522e-02	k: 977	n:40000
WWP1   40000 perm   9 sec   (4652 perm/sec)   p_kst 2.442500e-02   p_cons 9.903000e-01   p_joint 2.677500e-02

Joint ci ratio: 1.059252e-01	ci left: 2.524608e-02	ci right 2.808924e-02	k: 1332	n:50000
Cons ci ratio: 1.743937e-03	ci left: 9.893184e-01	ci right 9.910640e-01	k: 49511	n:50000
KS ci ratio: 1.110841e-01	ci left: 2.294855e-02	ci right 2.566706e-02	k: 1214	n:50000
WWP1   50000 perm   11 sec   (4530 perm/sec)   p_kst 2.428000e-02   p_cons 9.902200e-01   p_joint 2.664000e-02

Joint ci ratio: 9.683931e-02	ci left: 2.529452e-02	ci right 2.788488e-02	k: 1594	n:60000
Cons ci ratio: 1.612385e-03	ci left: 9.891367e-01	ci right 9.907487e-01	k: 59398	n:60000
KS ci ratio: 1.014413e-01	ci left: 2.305014e-02	ci right 2.552950e-02	k: 1456	n:60000
WWP1   60000 perm   14 sec   (4420 perm/sec)   p_kst 2.426667e-02   p_cons 9.899667e-01   p_joint 2.656667e-02

Joint ci ratio: 8.995013e-02	ci left: 2.522486e-02	ci right 2.761461e-02	k: 1848	n:70000
Cons ci ratio: 1.497602e-03	ci left: 9.891315e-01	ci right 9.906275e-01	k: 69293	n:70000
KS ci ratio: 9.428188e-02	ci left: 2.296258e-02	ci right 2.524853e-02	k: 1686	n:70000
WWP1   70000 perm   16 sec   (4332 perm/sec)   p_kst 2.408571e-02   p_cons 9.899000e-01   p_joint 2.640000e-02

Outputting figure to mutsig2_images.part000000000191/WWP1.3_2861_70000_0.024086_0.9899_0.0264.png
                gene_name: WWP1
               theta_stop: 0.094 
                    nperm: 70000 
                     p_ks: 0.024 
        ci_ks_bounds_left: 0.023 
       ci_ks_bounds_right: 0.025 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.026 
     ci_joint_bounds_left: 0.025 
    ci_joint_bounds_right: 0.028 

Current progress: 52 percent done.
XK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.073740e-01	ci left: 1.112507e-01	ci right 1.239730e-01	k: 1175	n:10000
Cons ci ratio: 6.775073e-02	ci left: 2.422288e-01	ci right 2.593166e-01	k: 2507	n:10000
KS ci ratio: 1.117840e-01	ci left: 1.033465e-01	ci right 1.156820e-01	k: 1094	n:10000
XK   10000 perm   2 sec   (6198 perm/sec)   p_kst 1.094000e-01   p_cons 2.507000e-01   p_joint 1.175000e-01

Joint ci ratio: 7.748406e-02	ci left: 1.090370e-01	ci right 1.178757e-01	k: 2268	n:20000
Cons ci ratio: 4.771062e-02	ci left: 2.462919e-01	ci right 2.583802e-01	k: 5046	n:20000
KS ci ratio: 7.828409e-02	ci left: 1.070221e-01	ci right 1.157912e-01	k: 2227	n:20000
XK   20000 perm   4 sec   (5517 perm/sec)   p_kst 1.113500e-01   p_cons 2.523000e-01   p_joint 1.134000e-01

Outputting figure to mutsig2_images.part000000000191/XK.3_1347_20000_0.11135_0.2523_0.1134.png
                gene_name: XK
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 54 percent done.
XKR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.440813e-02	ci left: 7.116922e-01	ci right 7.293792e-01	k: 7206	n:10000
Cons ci ratio: 6.084766e-02	ci left: 2.842889e-01	ci right 3.022316e-01	k: 2932	n:10000
KS ci ratio: 3.082932e-02	ci left: 6.081928e-01	ci right 6.273385e-01	k: 6178	n:10000
XKR3   10000 perm   2 sec   (6381 perm/sec)   p_kst 6.178000e-01   p_cons 2.932000e-01   p_joint 7.206000e-01

Outputting figure to mutsig2_images.part000000000191/XKR3.3_1392_10000_0.6178_0.2932_0.7206.png
                gene_name: XKR3
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 56 percent done.
XKR7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.670574e-02	ci left: 4.035254e-01	ci right 4.229252e-01	k: 4132	n:10000
Cons ci ratio: 2.804553e-02	ci left: 6.520288e-01	ci right 6.706771e-01	k: 6614	n:10000
KS ci ratio: 6.461939e-02	ci left: 2.602281e-01	ci right 2.777067e-01	k: 2689	n:10000
XKR7   10000 perm   2 sec   (6212 perm/sec)   p_kst 2.689000e-01   p_cons 6.614000e-01   p_joint 4.132000e-01

Outputting figure to mutsig2_images.part000000000191/XKR7.3_1752_10000_0.2689_0.6614_0.4132.png
                gene_name: XKR7
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 58 percent done.
WFDC11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.367182e-02	ci left: 8.853423e-01	ci right 8.976286e-01	k: 8916	n:10000
Cons ci ratio: 1.632709e-02	ci left: 8.450916e-01	ci right 8.591026e-01	k: 8522	n:10000
KS ci ratio: 4.090057e-02	ci left: 4.688665e-01	ci right 4.885459e-01	k: 4787	n:10000
WFDC11   10000 perm   1 sec   (7500 perm/sec)   p_kst 4.787000e-01   p_cons 8.522000e-01   p_joint 8.916000e-01

Outputting figure to mutsig2_images.part000000000191/WFDC11.2_276_10000_0.4787_0.8522_0.8916.png
                gene_name: WFDC11
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 60 percent done.
WFDC8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.083070e-02	ci left: 1.826474e-01	ci right 1.981334e-01	k: 1903	n:10000
Cons ci ratio: 1.620135e-01	ci left: 5.080410e-02	ci right 5.985714e-02	k: 552	n:10000
KS ci ratio: 4.733738e-02	ci left: 3.970506e-01	ci right 4.164037e-01	k: 4067	n:10000
WFDC8   10000 perm   1 sec   (6977 perm/sec)   p_kst 4.067000e-01   p_cons 5.520000e-02   p_joint 1.903000e-01

Joint ci ratio: 7.408212e-02	ci left: 1.182322e-01	ci right 1.273777e-01	k: 2455	n:20000
Cons ci ratio: 1.137492e-01	ci left: 5.285323e-02	ci right 5.927660e-02	k: 1120	n:20000
KS ci ratio: 3.386024e-02	ci left: 3.943969e-01	ci right 4.080318e-01	k: 8024	n:20000
WFDC8   20000 perm   3 sec   (6114 perm/sec)   p_kst 4.012000e-01   p_cons 5.600000e-02   p_joint 1.227500e-01

Joint ci ratio: 6.513167e-02	ci left: 1.042135e-01	ci right 1.112627e-01	k: 3231	n:30000
Cons ci ratio: 9.345190e-02	ci left: 5.280528e-02	ci right 5.801457e-02	k: 1661	n:30000
KS ci ratio: 2.770912e-02	ci left: 3.945826e-01	ci right 4.057034e-01	k: 12004	n:30000
WFDC8   30000 perm   5 sec   (5802 perm/sec)   p_kst 4.001333e-01   p_cons 5.536667e-02   p_joint 1.077000e-01

Outputting figure to mutsig2_images.part000000000191/WFDC8.2_750_30000_0.40013_0.055367_0.1077.png
                gene_name: WFDC8
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.055 
      ci_cons_bounds_left: 0.053 
     ci_cons_bounds_right: 0.058 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 62 percent done.
WFS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.105821e-02	ci left: 6.046775e-01	ci right 6.238559e-01	k: 6143	n:10000
Cons ci ratio: 4.486767e-02	ci left: 4.230598e-01	ci right 4.425793e-01	k: 4328	n:10000
KS ci ratio: 5.017843e-02	ci left: 3.693784e-01	ci right 3.884922e-01	k: 3789	n:10000
WFS1   10000 perm   2 sec   (5941 perm/sec)   p_kst 3.789000e-01   p_cons 4.328000e-01   p_joint 6.143000e-01

Outputting figure to mutsig2_images.part000000000191/WFS1.2_2701_10000_0.3789_0.4328_0.6143.png
                gene_name: WFS1
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 64 percent done.
WHSC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.304623e-01	ci left: 7.737381e-02	ci right 8.827067e-02	k: 827	n:10000
Cons ci ratio: 2.452959e-01	ci left: 2.184098e-02	ci right 2.803999e-02	k: 248	n:10000
KS ci ratio: 1.049357e-02	ci left: 9.281291e-01	ci right 9.380168e-01	k: 9332	n:10000
WHSC2   10000 perm   2 sec   (6433 perm/sec)   p_kst 9.332000e-01   p_cons 2.480000e-02   p_joint 8.270000e-02

Joint ci ratio: 8.454669e-02	ci left: 9.293210e-02	ci right 1.011855e-01	k: 1940	n:20000
Cons ci ratio: 1.741732e-01	ci left: 2.254539e-02	ci right 2.689429e-02	k: 493	n:20000
KS ci ratio: 7.530406e-03	ci left: 9.277063e-01	ci right 9.347677e-01	k: 18626	n:20000
WHSC2   20000 perm   4 sec   (5704 perm/sec)   p_kst 9.313000e-01   p_cons 2.465000e-02   p_joint 9.700000e-02

Joint ci ratio: 6.689651e-02	ci left: 9.925397e-02	ci right 1.061565e-01	k: 3080	n:30000
Cons ci ratio: 1.396263e-01	ci left: 2.380998e-02	ci right 2.741602e-02	k: 767	n:30000
KS ci ratio: 6.243528e-03	ci left: 9.263410e-01	ci right 9.321755e-01	k: 27879	n:30000
WHSC2   30000 perm   6 sec   (5418 perm/sec)   p_kst 9.293000e-01   p_cons 2.556667e-02   p_joint 1.026667e-01

Joint ci ratio: 5.759114e-02	ci left: 1.008027e-01	ci right 1.068050e-01	k: 4151	n:40000
Cons ci ratio: 1.187944e-01	ci left: 2.492365e-02	ci right 2.809559e-02	k: 1059	n:40000
KS ci ratio: 5.442733e-03	ci left: 9.258550e-01	ci right 9.309326e-01	k: 37137	n:40000
WHSC2   40000 perm   8 sec   (5237 perm/sec)   p_kst 9.284250e-01   p_cons 2.647500e-02   p_joint 1.037750e-01

Joint ci ratio: 5.868712e-02	ci left: 7.951079e-02	ci right 8.433788e-02	k: 4095	n:50000
Cons ci ratio: 1.063357e-01	ci left: 2.505125e-02	ci right 2.788408e-02	k: 1322	n:50000
KS ci ratio: 4.890856e-03	ci left: 9.254965e-01	ci right 9.300537e-01	k: 46390	n:50000
WHSC2   50000 perm   10 sec   (5098 perm/sec)   p_kst 9.278000e-01   p_cons 2.644000e-02   p_joint 8.190000e-02

Joint ci ratio: 2.086748e-02	ci left: 3.664508e-01	ci right 3.741950e-01	k: 22219	n:60000
Cons ci ratio: 9.609911e-02	ci left: 2.568512e-02	ci right 2.829424e-02	k: 1618	n:60000
KS ci ratio: 4.465203e-03	ci left: 9.256831e-01	ci right 9.298421e-01	k: 55667	n:60000
WHSC2   60000 perm   12 sec   (4980 perm/sec)   p_kst 9.277833e-01   p_cons 2.696667e-02   p_joint 3.703167e-01

Outputting figure to mutsig2_images.part000000000191/WHSC2.2_1664_60000_0.92778_0.026967_0.37032.png
                gene_name: WHSC2
               theta_stop: 0.096 
                    nperm: 60000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.027 
      ci_cons_bounds_left: 0.026 
     ci_cons_bounds_right: 0.028 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.37 

Current progress: 66 percent done.
WIPF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.301904e-02	ci left: 1.746777e-01	ci right 1.899078e-01	k: 1822	n:10000
Cons ci ratio: 2.513066e-02	ci left: 6.996848e-01	ci right 7.175935e-01	k: 7087	n:10000
KS ci ratio: 1.035205e-01	ci left: 1.188712e-01	ci right 1.319479e-01	k: 1253	n:10000
WIPF3   10000 perm   2 sec   (6522 perm/sec)   p_kst 1.253000e-01   p_cons 7.087000e-01   p_joint 1.822000e-01

Joint ci ratio: 5.568018e-02	ci left: 1.930406e-01	ci right 2.041471e-01	k: 3971	n:20000
Cons ci ratio: 1.781784e-02	ci left: 7.012412e-01	ci right 7.138985e-01	k: 14152	n:20000
KS ci ratio: 7.285306e-02	ci left: 1.218242e-01	ci right 1.310847e-01	k: 2528	n:20000
WIPF3   20000 perm   3 sec   (5800 perm/sec)   p_kst 1.264000e-01   p_cons 7.076000e-01   p_joint 1.985500e-01

Outputting figure to mutsig2_images.part000000000191/WIPF3.2_1480_20000_0.1264_0.7076_0.19855.png
                gene_name: WIPF3
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 68 percent done.
WISP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.515500e-02	ci left: 6.992813e-01	ci right 7.171972e-01	k: 7083	n:10000
KS ci ratio: 3.340178e-02	ci left: 5.695523e-01	ci right 5.890015e-01	k: 5793	n:10000
WISP1   10000 perm   1 sec   (6716 perm/sec)   p_kst 5.793000e-01   p_cons 7.083000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000191/WISP1.2_1124_10000_0.5793_0.7083_1.png
                gene_name: WISP1
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
WNK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.378589e-01	ci left: 6.962154e-02	ci right 8.002777e-02	k: 747	n:10000
KS ci ratio: 9.751082e-03	ci left: 9.370311e-01	ci right 9.463095e-01	k: 9418	n:10000
WNK2   10000 perm   2 sec   (4644 perm/sec)   p_kst 9.418000e-01   p_cons 7.470000e-02   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 9.180014e-02	ci left: 7.970183e-02	ci right 8.741975e-02	k: 1670	n:20000
KS ci ratio: 6.949165e-03	ci left: 9.375423e-01	ci right 9.441288e-01	k: 18818	n:20000
WNK2   20000 perm   5 sec   (4207 perm/sec)   p_kst 9.409000e-01   p_cons 8.350000e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000191/WNK2.2_6770_20000_0.9409_0.0835_1.png
                gene_name: WNK2
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.084 
      ci_cons_bounds_left: 0.080 
     ci_cons_bounds_right: 0.087 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
WNT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.049103e-02	ci left: 7.772209e-01	ci right 7.934125e-01	k: 7854	n:10000
Cons ci ratio: 1.514227e-02	ci left: 8.634550e-01	ci right 8.767286e-01	k: 8702	n:10000
KS ci ratio: 9.222915e-02	ci left: 1.458981e-01	ci right 1.601047e-01	k: 1529	n:10000
WNT3   10000 perm   1 sec   (6731 perm/sec)   p_kst 1.529000e-01   p_cons 8.702000e-01   p_joint 7.854000e-01

Outputting figure to mutsig2_images.part000000000191/WNT3.2_1084_10000_0.1529_0.8702_0.7854.png
                gene_name: WNT3
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.79 

Current progress: 74 percent done.
WNT3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.724923e-02	ci left: 3.979471e-01	ci right 4.173068e-01	k: 4076	n:10000
KS ci ratio: 5.007201e-02	ci left: 3.703732e-01	ci right 3.894968e-01	k: 3799	n:10000
WNT3A   10000 perm   1 sec   (6743 perm/sec)   p_kst 3.799000e-01   p_cons 4.076000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000191/WNT3A.2_1075_10000_0.3799_0.4076_1.png
                gene_name: WNT3A
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
WNT6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.902845e-02	ci left: 6.363347e-01	ci right 6.551803e-01	k: 6458	n:10000
Cons ci ratio: 3.604427e-02	ci left: 5.319735e-01	ci right 5.516021e-01	k: 5418	n:10000
KS ci ratio: 5.176048e-02	ci left: 3.549581e-01	ci right 3.739210e-01	k: 3644	n:10000
WNT6   10000 perm   1 sec   (6716 perm/sec)   p_kst 3.644000e-01   p_cons 5.418000e-01   p_joint 6.458000e-01

Outputting figure to mutsig2_images.part000000000191/WNT6.2_1114_10000_0.3644_0.5418_0.6458.png
                gene_name: WNT6
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 78 percent done.
WNT8A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.429303e-02	ci left: 7.136100e-01	ci right 7.312602e-01	k: 7225	n:10000
KS ci ratio: 9.901168e-03	ci left: 9.352693e-01	ci right 9.446723e-01	k: 9401	n:10000
WNT8A   10000 perm   1 sec   (6804 perm/sec)   p_kst 9.401000e-01   p_cons 7.225000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000191/WNT8A.2_1080_10000_0.9401_0.7225_1.png
                gene_name: WNT8A
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
WRAP53
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.056065e-02	ci left: 9.273022e-01	ci right 9.372442e-01	k: 9324	n:10000
KS ci ratio: 1.189079e-02	ci left: 9.101855e-01	ci right 9.211709e-01	k: 9158	n:10000
WRAP53   10000 perm   2 sec   (6477 perm/sec)   p_kst 9.158000e-01   p_cons 9.324000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000191/WRAP53.2_1687_10000_0.9158_0.9324_1.png
                gene_name: WRAP53
               theta_stop: 0.012 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
WSCD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.607020e-03	ci left: 9.897211e-01	ci right 9.933838e-01	k: 9917	n:10000
Cons ci ratio: 3.249207e-02	ci left: 5.829942e-01	ci right 6.023518e-01	k: 5927	n:10000
KS ci ratio: 8.895760e-03	ci left: 9.466899e-01	ci right 9.552449e-01	k: 9511	n:10000
WSCD2   10000 perm   2 sec   (6666 perm/sec)   p_kst 9.511000e-01   p_cons 5.927000e-01   p_joint 9.917000e-01

Outputting figure to mutsig2_images.part000000000191/WSCD2.2_1730_10000_0.9511_0.5927_0.9917.png
                gene_name: WSCD2
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 84 percent done.
WTAP
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 86 percent done.
WWOX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.200595e-02	ci left: 9.086422e-01	ci right 9.197151e-01	k: 9143	n:10000
Cons ci ratio: 1.923265e-02	ci left: 7.981111e-01	ci right 8.137103e-01	k: 8060	n:10000
KS ci ratio: 1.804305e-02	ci left: 8.176118e-01	ci right 8.325984e-01	k: 8252	n:10000
WWOX   10000 perm   2 sec   (6610 perm/sec)   p_kst 8.252000e-01   p_cons 8.060000e-01   p_joint 9.143000e-01

Outputting figure to mutsig2_images.part000000000191/WWOX.2_1343_10000_0.8252_0.806_0.9143.png
                gene_name: WWOX
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 88 percent done.
WWP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.048275e-02	ci left: 2.867661e-01	ci right 3.047530e-01	k: 2957	n:10000
KS ci ratio: 3.383534e-02	ci left: 5.632351e-01	ci right 5.827224e-01	k: 5730	n:10000
WWP2   10000 perm   2 sec   (6001 perm/sec)   p_kst 5.730000e-01   p_cons 2.957000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000191/WWP2.2_2709_10000_0.573_0.2957_1.png
                gene_name: WWP2
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
WWTR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.438252e-02	ci left: 8.749018e-01	ci right 8.876752e-01	k: 8814	n:10000
Cons ci ratio: 2.578935e-02	ci left: 6.887938e-01	ci right 7.068908e-01	k: 6979	n:10000
KS ci ratio: 2.885738e-02	ci left: 6.390502e-01	ci right 6.578633e-01	k: 6485	n:10000
WWTR1   10000 perm   1 sec   (6877 perm/sec)   p_kst 6.485000e-01   p_cons 6.979000e-01   p_joint 8.814000e-01

Outputting figure to mutsig2_images.part000000000191/WWTR1.2_1227_10000_0.6485_0.6979_0.8814.png
                gene_name: WWTR1
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.89 

Current progress: 92 percent done.
XAB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.459494e-02	ci left: 5.523091e-01	ci right 5.718547e-01	k: 5621	n:10000
Cons ci ratio: 5.689464e-02	ci left: 3.126467e-01	ci right 3.310572e-01	k: 3218	n:10000
KS ci ratio: 2.817083e-02	ci left: 6.500161e-01	ci right 6.686910e-01	k: 6594	n:10000
XAB2   10000 perm   2 sec   (6163 perm/sec)   p_kst 6.594000e-01   p_cons 3.218000e-01   p_joint 5.621000e-01

Outputting figure to mutsig2_images.part000000000191/XAB2.2_2644_10000_0.6594_0.3218_0.5621.png
                gene_name: XAB2
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 94 percent done.
XAGE3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.476731e-02	ci left: 4.241566e-01	ci right 4.436819e-01	k: 4339	n:10000
KS ci ratio: 3.289737e-02	ci left: 5.769745e-01	ci right 5.963749e-01	k: 5867	n:10000
XAGE3   10000 perm   1 sec   (7196 perm/sec)   p_kst 5.867000e-01   p_cons 4.339000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000191/XAGE3.2_352_10000_0.5867_0.4339_1.png
                gene_name: XAGE3
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
XAGE5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.407096e-02	ci left: 5.598265e-01	ci right 5.793330e-01	k: 5696	n:10000
KS ci ratio: 1.723172e-01	ci left: 4.494682e-02	ci right 5.351821e-02	k: 491	n:10000
XAGE5   10000 perm   1 sec   (7187 perm/sec)   p_kst 4.910000e-02   p_cons 5.696000e-01   p_joint 1

Joint ci ratio: 9.068004e-03	ci left: 8.991711e-01	ci right 9.074112e-01	k: 18067	n:20000
Cons ci ratio: 2.391686e-02	ci left: 5.663099e-01	ci right 5.800688e-01	k: 11464	n:20000
KS ci ratio: 1.218494e-01	ci left: 4.619466e-02	ci right 5.223726e-02	k: 983	n:20000
XAGE5   20000 perm   3 sec   (6323 perm/sec)   p_kst 4.915000e-02   p_cons 5.732000e-01   p_joint 9.033500e-01

Joint ci ratio: 7.450848e-03	ci left: 8.988168e-01	ci right 9.055717e-01	k: 27067	n:30000
Cons ci ratio: 1.948854e-02	ci left: 5.685811e-01	ci right 5.798045e-01	k: 17226	n:30000
KS ci ratio: 1.002426e-01	ci left: 4.606374e-02	ci right 5.095750e-02	k: 1454	n:30000
XAGE5   30000 perm   5 sec   (5972 perm/sec)   p_kst 4.846667e-02   p_cons 5.742000e-01   p_joint 9.022333e-01

Joint ci ratio: 6.435381e-03	ci left: 8.997539e-01	ci right 9.055875e-01	k: 36108	n:40000
Cons ci ratio: 1.680795e-02	ci left: 5.713645e-01	ci right 5.810745e-01	k: 23049	n:40000
KS ci ratio: 8.716774e-02	ci left: 4.602343e-02	ci right 5.024248e-02	k: 1924	n:40000
XAGE5   40000 perm   7 sec   (5414 perm/sec)   p_kst 4.810000e-02   p_cons 5.762250e-01   p_joint 9.027000e-01

Outputting figure to mutsig2_images.part000000000191/XAGE5.2_343_40000_0.0481_0.57622_0.9027.png
                gene_name: XAGE5
               theta_stop: 0.087 
                    nperm: 40000 
                     p_ks: 0.048 
        ci_ks_bounds_left: 0.046 
       ci_ks_bounds_right: 0.050 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 98 percent done.
XCR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.850394e-02	ci left: 8.100922e-01	ci right 8.253223e-01	k: 8178	n:10000
KS ci ratio: 1.153289e-02	ci left: 9.149216e-01	ci right 9.256321e-01	k: 9204	n:10000
XCR1   10000 perm   1 sec   (6826 perm/sec)   p_kst 9.204000e-01   p_cons 8.178000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000191/XCR1.2_1006_10000_0.9204_0.8178_1.png
                gene_name: XCR1
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000191
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 191 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1424>
Subject: Job 8004696: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1424>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000192> was used as the working directory.
Started at Sun Nov 11 15:25:37 2012
Results reported at Sun Nov 11 15:36:11 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000192.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000192.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 192  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000192.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    784.90 sec.
    Max Memory :      4730 MB
    Max Swap   :      7209 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
192
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 192
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 192: processing genes 17281 - 17370
Calculating significance of each gene.
Using projection method.
17281	XKR8	6.858700e-01
17282	XKR9	1.611407e-01
17283	XKRX	1
17284	XPA	1.389542e-01
17285	XPC	8.405212e-01
17286	XPNPEP1	1
17287	XPNPEP2	8.294049e-01
17288	XPNPEP3	4.163710e-01
17289	XPO1	9.149369e-01
17290	XPO4	9.825847e-01
17291	XPO5	9.451849e-01
17292	XPO6	1
17293	XPO7	6.335996e-01
17294	XPOT	9.019048e-01
17295	XPR1	8.717962e-01
17296	XRCC1	9.048877e-01
17297	XRCC2	6.983799e-01
17298	XRCC3	1
17299	XRCC4	1
17300	XRCC5	8.101427e-01
17301	XRCC6	1
17302	XRCC6BP1	3.100544e-01
17303	XRN1	9.582966e-01
17304	XRN2	7.634448e-01
17305	XRRA1	2.215881e-01
17306	XYLB	8.630718e-01
17307	XYLT1	3.759488e-01
17308	XYLT2	1
17309	YAF2	1.658938e-02
17310	YAP1	4.308414e-01
17311	YARS	7.283144e-01
17312	YARS2	6.312755e-01
17313	YBX1	2.930518e-01
17314	YBX2	7.128330e-01
17315	YDJC	1
17316	YEATS2	8.640690e-01
17317	YEATS4	1
17318	YES1	8.398918e-01
17319	YIF1A	1
17320	YIF1B	1
17321	YIPF1	6.401685e-01
17322	YIPF2	7.787019e-01
17323	YIPF3	7.812881e-01
17324	YIPF4	1.344171e-01
17325	YIPF5	1
17326	YIPF6	1
17327	YIPF7	6.103163e-01
17328	YJEFN3	1
17329	YKT6	4.055343e-01
17330	YLPM1	9.949491e-01
17331	YME1L1	1
17332	YOD1	1
17333	YPEL1	1
17334	YPEL2	4.281684e-02
17335	YPEL3	1
17336	YPEL4	5.081382e-02
17337	YPEL5	3.369673e-01
17338	YRDC	1
17339	YSK4	1
17340	YTHDC1	8.024682e-01
17341	YTHDC2	7.951754e-01
17342	YTHDF1	8.230218e-01
17343	YTHDF2	7.406438e-01
17344	YTHDF3	3.593048e-01
17345	YWHAB	5.980867e-01
17346	YWHAE	1
17347	YWHAG	1
17348	YWHAH	1
17349	YWHAQ	6.118467e-01
17350	YWHAZ	1
17351	YY1	1
17352	YY1AP1	5.580151e-01
17353	YY2	1
17354	ZACN	1
17355	ZADH2	5.899258e-01
17356	ZAK	1
17357	ZAN	9.999680e-01
17358	ZAP70	7.673727e-01
17359	ZAR1	1
17360	ZBBX	4.884868e-08
17361	ZBED1	1
17362	ZBED2	1
17363	ZBED4	9.489677e-01
17364	ZBP1	1.970693e-01
17365	ZBTB1	1
17366	ZBTB10	6.661140e-01
17367	ZBTB11	2.880944e-01
17368	ZBTB12	7.891357e-01
17369	ZBTB16	2.421514e-01
17370	ZBTB17	9.633033e-01
Done

Running MutSig 2:
Scatter job 192: processing genes 17281 - 17370
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ZBBX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.465171e-02	ci left: 1.394271e-01	ci right 1.533796e-01	k: 1463	n:10000
Cons ci ratio: 2.796419e-02	ci left: 6.533372e-01	ci right 6.719680e-01	k: 6627	n:10000
KS ci ratio: 2.537862e-01	ci left: 2.033901e-02	ci right 2.634310e-02	k: 232	n:10000
ZBBX   10000 perm   3 sec   (3908 perm/sec)   p_kst 2.320000e-02   p_cons 6.627000e-01   p_joint 1.463000e-01

Joint ci ratio: 1.124792e-01	ci left: 5.402115e-02	ci right 6.050832e-02	k: 1144	n:20000
Cons ci ratio: 1.913002e-02	ci left: 6.708206e-01	ci right 6.838278e-01	k: 13547	n:20000
KS ci ratio: 1.831122e-01	ci left: 2.034603e-02	ci right 2.449443e-02	k: 447	n:20000
ZBBX   20000 perm   8 sec   (2368 perm/sec)   p_kst 2.235000e-02   p_cons 6.773500e-01   p_joint 5.720000e-02

Joint ci ratio: 9.345190e-02	ci left: 5.280528e-02	ci right 5.801457e-02	k: 1661	n:30000
Cons ci ratio: 1.646852e-02	ci left: 6.483850e-01	ci right 6.591852e-01	k: 19614	n:30000
KS ci ratio: 1.504302e-01	ci left: 2.046620e-02	ci right 2.382722e-02	k: 663	n:30000
ZBBX   30000 perm   11 sec   (2614 perm/sec)   p_kst 2.210000e-02   p_cons 6.538000e-01   p_joint 5.536667e-02

Joint ci ratio: 8.341158e-02	ci left: 5.013832e-02	ci right 5.452696e-02	k: 2092	n:40000
Cons ci ratio: 1.429141e-02	ci left: 6.481863e-01	ci right 6.575415e-01	k: 26115	n:40000
KS ci ratio: 1.290402e-01	ci left: 2.109311e-02	ci right 2.402677e-02	k: 901	n:40000
ZBBX   40000 perm   15 sec   (2743 perm/sec)   p_kst 2.252500e-02   p_cons 6.528750e-01   p_joint 5.230000e-02

Joint ci ratio: 7.655935e-02	ci left: 4.790947e-02	ci right 5.174301e-02	k: 2490	n:50000
Cons ci ratio: 1.274759e-02	ci left: 6.499319e-01	ci right 6.582902e-01	k: 32706	n:50000
KS ci ratio: 1.156010e-01	ci left: 2.117900e-02	ci right 2.379685e-02	k: 1123	n:50000
ZBBX   50000 perm   18 sec   (2813 perm/sec)   p_kst 2.246000e-02   p_cons 6.541200e-01   p_joint 4.980000e-02

Joint ci ratio: 7.522308e-02	ci left: 4.166886e-02	ci right 4.494216e-02	k: 2597	n:60000
Cons ci ratio: 1.162245e-02	ci left: 6.508631e-01	ci right 6.584886e-01	k: 39281	n:60000
KS ci ratio: 1.048471e-01	ci left: 2.157172e-02	ci right 2.397475e-02	k: 1365	n:60000
ZBBX   60000 perm   21 sec   (2846 perm/sec)   p_kst 2.275000e-02   p_cons 6.546833e-01   p_joint 4.328333e-02

Joint ci ratio: 7.476637e-02	ci left: 3.637120e-02	ci right 3.921014e-02	k: 2644	n:70000
Cons ci ratio: 1.077284e-02	ci left: 6.506201e-01	ci right 6.576814e-01	k: 45791	n:70000
KS ci ratio: 9.674917e-02	ci left: 2.180455e-02	ci right 2.403524e-02	k: 1603	n:70000
ZBBX   70000 perm   25 sec   (2857 perm/sec)   p_kst 2.290000e-02   p_cons 6.541571e-01   p_joint 3.777143e-02

Outputting figure to mutsig2_images.part000000000192/ZBBX.17_2475_70000_0.0229_0.65416_0.037771.png
                gene_name: ZBBX
               theta_stop: 0.097 
                    nperm: 70000 
                     p_ks: 0.023 
        ci_ks_bounds_left: 0.022 
       ci_ks_bounds_right: 0.024 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.038 
     ci_joint_bounds_left: 0.036 
    ci_joint_bounds_right: 0.039 

Current progress: 2 percent done.
ZAN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.306720e-02	ci left: 5.744668e-01	ci right 5.938842e-01	k: 5842	n:10000
Cons ci ratio: 5.385802e-02	ci left: 3.368712e-01	ci right 3.556184e-01	k: 3462	n:10000
KS ci ratio: 2.788918e-02	ci left: 6.545449e-01	ci right 6.731595e-01	k: 6639	n:10000
ZAN   10000 perm   3 sec   (3017 perm/sec)   p_kst 6.639000e-01   p_cons 3.462000e-01   p_joint 5.842000e-01

Outputting figure to mutsig2_images.part000000000192/ZAN.11_8691_10000_0.6639_0.3462_0.5842.png
                gene_name: ZAN
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 5 percent done.
YLPM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.046204e-01	ci left: 1.166232e-01	ci right 1.295972e-01	k: 1230	n:10000
Cons ci ratio: 1.732451e-01	ci left: 4.446748e-02	ci right 5.299787e-02	k: 486	n:10000
KS ci ratio: 4.324244e-02	ci left: 4.412128e-01	ci right 4.608157e-01	k: 4510	n:10000
YLPM1   10000 perm   3 sec   (3300 perm/sec)   p_kst 4.510000e-01   p_cons 4.860000e-02   p_joint 1.230000e-01

Joint ci ratio: 6.823194e-02	ci left: 1.367955e-01	ci right 1.465089e-01	k: 2832	n:20000
Cons ci ratio: 1.254441e-01	ci left: 4.362287e-02	ci right 4.950986e-02	k: 930	n:20000
KS ci ratio: 3.040118e-02	ci left: 4.469821e-01	ci right 4.608313e-01	k: 9078	n:20000
YLPM1   20000 perm   7 sec   (3047 perm/sec)   p_kst 4.539000e-01   p_cons 4.650000e-02   p_joint 1.416000e-01

Joint ci ratio: 5.650788e-02	ci left: 1.343133e-01	ci right 1.421569e-01	k: 4146	n:30000
Cons ci ratio: 1.024447e-01	ci left: 4.414462e-02	ci right 4.894369e-02	k: 1395	n:30000
KS ci ratio: 2.460896e-02	ci left: 4.525495e-01	ci right 4.638586e-01	k: 13746	n:30000
YLPM1   30000 perm   10 sec   (2940 perm/sec)   p_kst 4.582000e-01   p_cons 4.650000e-02   p_joint 1.382000e-01

Joint ci ratio: 4.942775e-02	ci left: 1.325063e-01	ci right 1.392466e-01	k: 5434	n:40000
Cons ci ratio: 8.374991e-02	ci left: 4.974625e-02	ci right 5.411909e-02	k: 2076	n:40000
KS ci ratio: 2.134020e-02	ci left: 4.526585e-01	ci right 4.624477e-01	k: 18302	n:40000
YLPM1   40000 perm   14 sec   (2876 perm/sec)   p_kst 4.575500e-01   p_cons 5.190000e-02   p_joint 1.358500e-01

Outputting figure to mutsig2_images.part000000000192/YLPM1.10_6521_40000_0.45755_0.0519_0.13585.png
                gene_name: YLPM1
               theta_stop: 0.084 
                    nperm: 40000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.052 
      ci_cons_bounds_left: 0.050 
     ci_cons_bounds_right: 0.054 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 8 percent done.
YEATS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.079421e-02	ci left: 4.701650e-01	ci right 4.898466e-01	k: 4800	n:10000
Cons ci ratio: 1.069622e-01	ci left: 1.120319e-01	ci right 1.247914e-01	k: 1183	n:10000
KS ci ratio: 3.037421e-02	ci left: 6.152251e-01	ci right 6.343022e-01	k: 6248	n:10000
YEATS2   10000 perm   2 sec   (4454 perm/sec)   p_kst 6.248000e-01   p_cons 1.183000e-01   p_joint 4.800000e-01

Joint ci ratio: 3.372322e-02	ci left: 3.963412e-01	ci right 4.099870e-01	k: 8063	n:20000
Cons ci ratio: 7.796938e-02	ci left: 1.078084e-01	ci right 1.166047e-01	k: 2243	n:20000
KS ci ratio: 2.114119e-02	ci left: 6.254732e-01	ci right 6.388883e-01	k: 12644	n:20000
YEATS2   20000 perm   5 sec   (3923 perm/sec)   p_kst 6.322000e-01   p_cons 1.121500e-01   p_joint 4.031500e-01

Outputting figure to mutsig2_images.part000000000192/YEATS2.7_4389_20000_0.6322_0.11215_0.40315.png
                gene_name: YEATS2
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.41 

Current progress: 10 percent done.
XPNPEP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.947207e-02	ci left: 7.941537e-01	ci right 8.098700e-01	k: 8021	n:10000
Cons ci ratio: 9.206414e-03	ci left: 9.432583e-01	ci right 9.520786e-01	k: 9478	n:10000
KS ci ratio: 3.794440e-02	ci left: 5.063518e-01	ci right 5.260388e-01	k: 5162	n:10000
XPNPEP3   10000 perm   2 sec   (5785 perm/sec)   p_kst 5.162000e-01   p_cons 9.478000e-01   p_joint 8.021000e-01

Outputting figure to mutsig2_images.part000000000192/XPNPEP3.6_1564_10000_0.5162_0.9478_0.8021.png
                gene_name: XPNPEP3
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 12 percent done.
XRRA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.195533e-03	ci left: 9.540918e-01	ci right 9.620385e-01	k: 9582	n:10000
KS ci ratio: 2.194382e-02	ci left: 7.529207e-01	ci right 7.697268e-01	k: 7614	n:10000
XRRA1   10000 perm   2 sec   (5361 perm/sec)   p_kst 7.614000e-01   p_cons 9.582000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000192/XRRA1.5_2447_10000_0.7614_0.9582_1.png
                gene_name: XRRA1
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 15 percent done.
XYLT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.359516e-02	ci left: 2.128012e-01	ci right 2.291616e-01	k: 2209	n:10000
Cons ci ratio: 5.375114e-02	ci left: 3.377653e-01	ci right 3.565238e-01	k: 3471	n:10000
KS ci ratio: 8.745193e-02	ci left: 1.599340e-01	ci right 1.746603e-01	k: 1672	n:10000
XYLT1   10000 perm   2 sec   (5392 perm/sec)   p_kst 1.672000e-01   p_cons 3.471000e-01   p_joint 2.209000e-01

Outputting figure to mutsig2_images.part000000000192/XYLT1.5_2928_10000_0.1672_0.3471_0.2209.png
                gene_name: XYLT1
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 18 percent done.
YSK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.980736e-02	ci left: 2.914241e-01	ci right 3.094923e-01	k: 3004	n:10000
Cons ci ratio: 3.996185e-02	ci left: 4.804561e-01	ci right 5.001496e-01	k: 4903	n:10000
KS ci ratio: 6.218018e-02	ci left: 2.754728e-01	ci right 2.932529e-01	k: 2843	n:10000
YSK4   10000 perm   2 sec   (4820 perm/sec)   p_kst 2.843000e-01   p_cons 4.903000e-01   p_joint 3.004000e-01

Outputting figure to mutsig2_images.part000000000192/YSK4.5_4027_10000_0.2843_0.4903_0.3004.png
                gene_name: YSK4
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 20 percent done.
ZBTB11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.467681e-02	ci left: 3.301173e-01	ci right 3.487763e-01	k: 3394	n:10000
Cons ci ratio: 1.519441e-01	ci left: 5.764078e-02	ci right 6.721608e-02	k: 623	n:10000
KS ci ratio: 1.388292e-02	ci left: 8.822699e-01	ci right 8.947028e-01	k: 8886	n:10000
ZBTB11   10000 perm   2 sec   (4965 perm/sec)   p_kst 8.886000e-01   p_cons 6.230000e-02   p_joint 3.394000e-01

Joint ci ratio: 4.617429e-02	ci left: 2.587442e-01	ci right 2.710242e-01	k: 5297	n:20000
Cons ci ratio: 1.074889e-01	ci left: 5.898909e-02	ci right 6.573884e-02	k: 1246	n:20000
KS ci ratio: 1.016403e-02	ci left: 8.769402e-01	ci right 8.859485e-01	k: 17630	n:20000
ZBTB11   20000 perm   5 sec   (4357 perm/sec)   p_kst 8.815000e-01   p_cons 6.230000e-02   p_joint 2.648500e-01

Joint ci ratio: 4.092863e-02	ci left: 2.293508e-01	ci right 2.389674e-01	k: 7024	n:30000
Cons ci ratio: 8.767754e-02	ci left: 5.972137e-02	ci right 6.523040e-02	k: 1873	n:30000
KS ci ratio: 7.453662e-03	ci left: 8.987491e-01	ci right 9.055061e-01	k: 27065	n:30000
ZBTB11   30000 perm   7 sec   (4127 perm/sec)   p_kst 9.021667e-01   p_cons 6.243333e-02   p_joint 2.341333e-01

Outputting figure to mutsig2_images.part000000000192/ZBTB11.5_3206_30000_0.90217_0.062433_0.23413.png
                gene_name: ZBTB11
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.062 
      ci_cons_bounds_left: 0.060 
     ci_cons_bounds_right: 0.065 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 22 percent done.
ZBTB16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.720887e-02	ci left: 3.102655e-01	ci right 3.286398e-01	k: 3194	n:10000
Cons ci ratio: 1.849218e-01	ci left: 3.901215e-02	ci right 4.705680e-02	k: 429	n:10000
KS ci ratio: 1.408530e-02	ci left: 8.793013e-01	ci right 8.918731e-01	k: 8857	n:10000
ZBTB16   10000 perm   2 sec   (4981 perm/sec)   p_kst 8.857000e-01   p_cons 4.290000e-02   p_joint 3.194000e-01

Joint ci ratio: 4.947432e-02	ci left: 2.329541e-01	ci right 2.448219e-01	k: 4777	n:20000
Cons ci ratio: 1.387052e-01	ci left: 3.573081e-02	ci right 4.110445e-02	k: 767	n:20000
KS ci ratio: 1.019076e-02	ci left: 8.763813e-01	ci right 8.854076e-01	k: 17619	n:20000
ZBTB16   20000 perm   4 sec   (4462 perm/sec)   p_kst 8.809500e-01   p_cons 3.835000e-02   p_joint 2.388500e-01

Joint ci ratio: 4.147233e-02	ci left: 2.246851e-01	ci right 2.342340e-01	k: 6883	n:30000
Cons ci ratio: 1.129984e-01	ci left: 3.638338e-02	ci right 4.077323e-02	k: 1156	n:30000
KS ci ratio: 8.302566e-03	ci left: 8.776877e-01	ci right 8.850382e-01	k: 26442	n:30000
ZBTB16   30000 perm   7 sec   (4278 perm/sec)   p_kst 8.814000e-01   p_cons 3.853333e-02   p_joint 2.294333e-01

Joint ci ratio: 3.198659e-02	ci left: 2.685885e-01	ci right 2.773445e-01	k: 10918	n:40000
Cons ci ratio: 9.732521e-02	ci left: 3.707501e-02	ci right 4.089229e-02	k: 1558	n:40000
KS ci ratio: 7.134978e-03	ci left: 8.798098e-01	ci right 8.861345e-01	k: 35320	n:40000
ZBTB16   40000 perm   10 sec   (4145 perm/sec)   p_kst 8.830000e-01   p_cons 3.895000e-02   p_joint 2.729500e-01

Outputting figure to mutsig2_images.part000000000192/ZBTB16.5_2046_40000_0.883_0.03895_0.27295.png
                gene_name: ZBTB16
               theta_stop: 0.097 
                    nperm: 40000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.039 
      ci_cons_bounds_left: 0.037 
     ci_cons_bounds_right: 0.041 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 25 percent done.
XPO7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.221968e-01	ci left: 8.757121e-02	ci right 9.906697e-02	k: 932	n:10000
Cons ci ratio: 1.639045e-01	ci left: 4.965055e-02	ci right 5.861142e-02	k: 540	n:10000
KS ci ratio: 1.296954e-01	ci left: 7.824692e-02	ci right 8.919702e-02	k: 836	n:10000
XPO7   10000 perm   2 sec   (4827 perm/sec)   p_kst 8.360000e-02   p_cons 5.400000e-02   p_joint 9.320000e-02

Joint ci ratio: 8.648459e-02	ci left: 8.910730e-02	ci right 9.721143e-02	k: 1862	n:20000
Cons ci ratio: 1.157874e-01	ci left: 5.105351e-02	ci right 5.737688e-02	k: 1083	n:20000
KS ci ratio: 9.286544e-02	ci left: 7.798885e-02	ci right 8.563325e-02	k: 1635	n:20000
XPO7   20000 perm   5 sec   (4324 perm/sec)   p_kst 8.175000e-02   p_cons 5.415000e-02   p_joint 9.310000e-02

Joint ci ratio: 7.020695e-02	ci left: 9.081888e-02	ci right 9.745996e-02	k: 2823	n:30000
Cons ci ratio: 9.396171e-02	ci left: 5.225117e-02	ci right 5.743546e-02	k: 1644	n:30000
KS ci ratio: 7.529148e-02	ci left: 7.973818e-02	ci right 8.600955e-02	k: 2485	n:30000
XPO7   30000 perm   7 sec   (4146 perm/sec)   p_kst 8.283333e-02   p_cons 5.480000e-02   p_joint 9.410000e-02

Outputting figure to mutsig2_images.part000000000192/XPO7.4_3428_30000_0.082833_0.0548_0.0941.png
                gene_name: XPO7
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.083 
        ci_ks_bounds_left: 0.080 
       ci_ks_bounds_right: 0.086 
                   p_cons: 0.055 
      ci_cons_bounds_left: 0.052 
     ci_cons_bounds_right: 0.057 
                  p_joint: 0.094 
     ci_joint_bounds_left: 0.091 
    ci_joint_bounds_right: 0.097 

Current progress: 28 percent done.
XRCC6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.770196e-02	ci left: 6.575647e-01	ci right 6.761380e-01	k: 6669	n:10000
KS ci ratio: 2.810189e-02	ci left: 6.511231e-01	ci right 6.697834e-01	k: 6605	n:10000
XRCC6   10000 perm   2 sec   (5761 perm/sec)   p_kst 6.605000e-01   p_cons 6.669000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000192/XRCC6.4_1878_10000_0.6605_0.6669_1.png
                gene_name: XRCC6
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 30 percent done.
XRN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.024777e-02	ci left: 7.812748e-01	ci right 7.973563e-01	k: 7894	n:10000
Cons ci ratio: 5.141594e-02	ci left: 3.580403e-01	ci right 3.770370e-01	k: 3675	n:10000
KS ci ratio: 2.594843e-02	ci left: 6.861727e-01	ci right 7.043134e-01	k: 6953	n:10000
XRN1   10000 perm   2 sec   (4648 perm/sec)   p_kst 6.953000e-01   p_cons 3.675000e-01   p_joint 7.894000e-01

Outputting figure to mutsig2_images.part000000000192/XRN1.4_5289_10000_0.6953_0.3675_0.7894.png
                gene_name: XRN1
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 32 percent done.
YTHDC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.772336e-02	ci left: 8.227970e-01	ci right 8.376101e-01	k: 8303	n:10000
KS ci ratio: 1.540909e-02	ci left: 8.593708e-01	ci right 8.728151e-01	k: 8662	n:10000
YTHDC2   10000 perm   2 sec   (4541 perm/sec)   p_kst 8.662000e-01   p_cons 8.303000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000192/YTHDC2.4_4409_10000_0.8662_0.8303_1.png
                gene_name: YTHDC2
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 35 percent done.
YY1AP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.169744e-02	ci left: 5.949377e-01	ci right 6.142014e-01	k: 6046	n:10000
Cons ci ratio: 3.396687e-02	ci left: 5.613302e-01	ci right 5.808283e-01	k: 5711	n:10000
KS ci ratio: 4.587792e-02	ci left: 4.121944e-01	ci right 4.316511e-01	k: 4219	n:10000
YY1AP1   10000 perm   2 sec   (5949 perm/sec)   p_kst 4.219000e-01   p_cons 5.711000e-01   p_joint 6.046000e-01

Outputting figure to mutsig2_images.part000000000192/YY1AP1.4_2495_10000_0.4219_0.5711_0.6046.png
                gene_name: YY1AP1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 38 percent done.
ZAP70
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.580505e-02	ci left: 3.210824e-01	ci right 3.396165e-01	k: 3303	n:10000
Cons ci ratio: 2.067928e-02	ci left: 7.740800e-01	ci right 7.903553e-01	k: 7823	n:10000
KS ci ratio: 6.791337e-02	ci left: 2.413392e-01	ci right 2.584067e-01	k: 2498	n:10000
ZAP70   10000 perm   2 sec   (5721 perm/sec)   p_kst 2.498000e-01   p_cons 7.823000e-01   p_joint 3.303000e-01

Outputting figure to mutsig2_images.part000000000192/ZAP70.4_1908_10000_0.2498_0.7823_0.3303.png
                gene_name: ZAP70
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 40 percent done.
ZBED4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.688917e-02	ci left: 6.707558e-01	ci right 6.891393e-01	k: 6800	n:10000
Cons ci ratio: 1.380573e-02	ci left: 8.833963e-01	ci right 8.957757e-01	k: 8897	n:10000
KS ci ratio: 3.755134e-02	ci left: 5.115541e-01	ci right 5.312334e-01	k: 5214	n:10000
ZBED4   10000 perm   2 sec   (4885 perm/sec)   p_kst 5.214000e-01   p_cons 8.897000e-01   p_joint 6.800000e-01

Outputting figure to mutsig2_images.part000000000192/ZBED4.4_3520_10000_0.5214_0.8897_0.68.png
                gene_name: ZBED4
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 42 percent done.
ZBTB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.314211e-02	ci left: 5.733634e-01	ci right 5.927881e-01	k: 5831	n:10000
KS ci ratio: 1.783640e-02	ci left: 8.209666e-01	ci right 8.358415e-01	k: 8285	n:10000
ZBTB1   10000 perm   2 sec   (6175 perm/sec)   p_kst 8.285000e-01   p_cons 5.831000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000192/ZBTB1.4_2187_10000_0.8285_0.5831_1.png
                gene_name: ZBTB1
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 45 percent done.
XKR9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.405044e-02	ci left: 1.409954e-01	ci right 1.550103e-01	k: 1479	n:10000
Cons ci ratio: 6.481713e-02	ci left: 2.590407e-01	ci right 2.764948e-01	k: 2677	n:10000
KS ci ratio: 9.788599e-02	ci left: 1.313941e-01	ci right 1.450174e-01	k: 1381	n:10000
XKR9   10000 perm   2 sec   (6476 perm/sec)   p_kst 1.381000e-01   p_cons 2.677000e-01   p_joint 1.479000e-01

Outputting figure to mutsig2_images.part000000000192/XKR9.3_1134_10000_0.1381_0.2677_0.1479.png
                gene_name: XKR9
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.16 

Current progress: 48 percent done.
XPNPEP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.033134e-02	ci left: 4.758596e-01	ci right 4.955488e-01	k: 4857	n:10000
Cons ci ratio: 7.672327e-02	ci left: 1.989967e-01	ci right 2.149743e-01	k: 2069	n:10000
KS ci ratio: 3.297202e-02	ci left: 5.758711e-01	ci right 5.952790e-01	k: 5856	n:10000
XPNPEP2   10000 perm   2 sec   (5669 perm/sec)   p_kst 5.856000e-01   p_cons 2.069000e-01   p_joint 4.857000e-01

Outputting figure to mutsig2_images.part000000000192/XPNPEP2.3_2109_10000_0.5856_0.2069_0.4857.png
                gene_name: XPNPEP2
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 50 percent done.
XPO4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.072890e-02	ci left: 4.709642e-01	ci right 4.906470e-01	k: 4808	n:10000
Cons ci ratio: 6.951078e-03	ci left: 9.660453e-01	ci right 9.728776e-01	k: 9696	n:10000
KS ci ratio: 4.360219e-02	ci left: 4.371223e-01	ci right 4.567087e-01	k: 4469	n:10000
XPO4   10000 perm   2 sec   (5204 perm/sec)   p_kst 4.469000e-01   p_cons 9.696000e-01   p_joint 4.808000e-01

Outputting figure to mutsig2_images.part000000000192/XPO4.3_3548_10000_0.4469_0.9696_0.4808.png
                gene_name: XPO4
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 52 percent done.
XPOT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.838341e-03	ci left: 9.473144e-01	ci right 9.558201e-01	k: 9517	n:10000
Cons ci ratio: 1.282242e-02	ci left: 8.974420e-01	ci right 9.091219e-01	k: 9034	n:10000
KS ci ratio: 2.123069e-02	ci left: 7.648635e-01	ci right 7.813771e-01	k: 7732	n:10000
XPOT   10000 perm   2 sec   (5280 perm/sec)   p_kst 7.732000e-01   p_cons 9.034000e-01   p_joint 9.517000e-01

Outputting figure to mutsig2_images.part000000000192/XPOT.3_2985_10000_0.7732_0.9034_0.9517.png
                gene_name: XPOT
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 55 percent done.
XRN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.128351e-02	ci left: 3.592335e-01	ci right 3.782430e-01	k: 3687	n:10000
Cons ci ratio: 2.575879e-02	ci left: 6.892979e-01	ci right 7.073865e-01	k: 6984	n:10000
KS ci ratio: 6.524960e-02	ci left: 2.564684e-01	ci right 2.738686e-01	k: 2651	n:10000
XRN2   10000 perm   2 sec   (5426 perm/sec)   p_kst 2.651000e-01   p_cons 6.984000e-01   p_joint 3.687000e-01

Outputting figure to mutsig2_images.part000000000192/XRN2.3_2973_10000_0.2651_0.6984_0.3687.png
                gene_name: XRN2
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 57 percent done.
YAF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.829303e-01	ci left: 3.987233e-02	ci right 4.799604e-02	k: 438	n:10000
Cons ci ratio: 6.937534e-02	ci left: 2.335329e-01	ci right 2.504177e-01	k: 2419	n:10000
KS ci ratio: 2.083034e-01	ci left: 3.062918e-02	ci right 3.784546e-02	k: 341	n:10000
YAF2   10000 perm   1 sec   (6999 perm/sec)   p_kst 3.410000e-02   p_cons 2.419000e-01   p_joint 4.380000e-02

Joint ci ratio: 1.320512e-01	ci left: 3.940703e-02	ci right 4.502705e-02	k: 843	n:20000
Cons ci ratio: 4.900279e-02	ci left: 2.364241e-01	ci right 2.483509e-01	k: 4847	n:20000
KS ci ratio: 1.519588e-01	ci left: 2.974850e-02	ci right 3.468873e-02	k: 643	n:20000
YAF2   20000 perm   3 sec   (5871 perm/sec)   p_kst 3.215000e-02   p_cons 2.423500e-01   p_joint 4.215000e-02

Joint ci ratio: 1.206947e-01	ci left: 3.191308e-02	ci right 3.604448e-02	k: 1018	n:30000
Cons ci ratio: 4.023349e-02	ci left: 2.355069e-01	ci right 2.452101e-01	k: 7210	n:30000
KS ci ratio: 1.236785e-01	ci left: 3.039280e-02	ci right 3.443175e-02	k: 971	n:30000
YAF2   30000 perm   6 sec   (5444 perm/sec)   p_kst 3.236667e-02   p_cons 2.403333e-01   p_joint 3.393333e-02

Joint ci ratio: 9.739023e-02	ci left: 3.702618e-02	ci right 4.084113e-02	k: 1556	n:40000
Cons ci ratio: 3.490461e-02	ci left: 2.355230e-01	ci right 2.439149e-01	k: 9588	n:40000
KS ci ratio: 1.067690e-01	ci left: 3.085682e-02	ci right 3.436146e-02	k: 1303	n:40000
YAF2   40000 perm   8 sec   (5243 perm/sec)   p_kst 3.257500e-02   p_cons 2.397000e-01   p_joint 3.890000e-02

Joint ci ratio: 8.581509e-02	ci left: 3.833830e-02	ci right 4.179536e-02	k: 2002	n:50000
Cons ci ratio: 3.118245e-02	ci left: 2.364009e-01	ci right 2.439092e-01	k: 12007	n:50000
KS ci ratio: 9.863736e-02	ci left: 2.910765e-02	ci right 3.214716e-02	k: 1530	n:50000
YAF2   50000 perm   10 sec   (5095 perm/sec)   p_kst 3.060000e-02   p_cons 2.401400e-01   p_joint 4.004000e-02

Outputting figure to mutsig2_images.part000000000192/YAF2.3_559_50000_0.0306_0.24014_0.04004.png
                gene_name: YAF2
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.040 
     ci_joint_bounds_left: 0.038 
    ci_joint_bounds_right: 0.042 

Current progress: 60 percent done.
YTHDF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.884244e-02	ci left: 1.291424e-01	ci right 1.426705e-01	k: 1358	n:10000
Cons ci ratio: 2.288572e-01	ci left: 2.523219e-02	ci right 3.184628e-02	k: 284	n:10000
KS ci ratio: 5.448234e-02	ci left: 3.317063e-01	ci right 3.503864e-01	k: 3410	n:10000
YTHDF3   10000 perm   2 sec   (5995 perm/sec)   p_kst 3.410000e-01   p_cons 2.840000e-02   p_joint 1.358000e-01

Joint ci ratio: 1.387052e-01	ci left: 3.573081e-02	ci right 4.110445e-02	k: 767	n:20000
Cons ci ratio: 1.631610e-01	ci left: 2.575746e-02	ci right 3.038111e-02	k: 560	n:20000
KS ci ratio: 3.868819e-02	ci left: 3.325876e-01	ci right 3.457592e-01	k: 6783	n:20000
YTHDF3   20000 perm   4 sec   (5276 perm/sec)   p_kst 3.391500e-01   p_cons 2.800000e-02   p_joint 3.835000e-02

Joint ci ratio: 1.302649e-01	ci left: 2.738837e-02	ci right 3.123684e-02	k: 878	n:30000
Cons ci ratio: 1.331807e-01	ci left: 2.619459e-02	ci right 2.996421e-02	k: 841	n:30000
KS ci ratio: 3.185603e-02	ci left: 3.300569e-01	ci right 3.407750e-01	k: 10062	n:30000
YTHDF3   30000 perm   6 sec   (4969 perm/sec)   p_kst 3.354000e-01   p_cons 2.803333e-02   p_joint 2.926667e-02

Joint ci ratio: 7.915141e-02	ci left: 5.548366e-02	ci right 6.008080e-02	k: 2310	n:40000
Cons ci ratio: 1.174915e-01	ci left: 2.548209e-02	ci right 2.868706e-02	k: 1082	n:40000
KS ci ratio: 2.770352e-02	ci left: 3.289293e-01	ci right 3.381949e-01	k: 13342	n:40000
YTHDF3   40000 perm   8 sec   (4771 perm/sec)   p_kst 3.335500e-01   p_cons 2.705000e-02   p_joint 5.775000e-02

Joint ci ratio: 8.051604e-02	ci left: 4.343477e-02	ci right 4.709826e-02	k: 2262	n:50000
Cons ci ratio: 1.053983e-01	ci left: 2.549938e-02	ci right 2.835590e-02	k: 1345	n:50000
KS ci ratio: 2.484329e-02	ci left: 3.282708e-01	ci right 3.365487e-01	k: 16620	n:50000
YTHDF3   50000 perm   11 sec   (4618 perm/sec)   p_kst 3.324000e-01   p_cons 2.690000e-02   p_joint 4.524000e-02

Joint ci ratio: 7.402488e-02	ci left: 4.299477e-02	ci right 4.631613e-02	k: 2678	n:60000
Cons ci ratio: 9.579549e-02	ci left: 2.584789e-02	ci right 2.846478e-02	k: 1628	n:60000
KS ci ratio: 2.266697e-02	ci left: 3.288632e-01	ci right 3.364197e-01	k: 19958	n:60000
YTHDF3   60000 perm   13 sec   (4490 perm/sec)   p_kst 3.326333e-01   p_cons 2.713333e-02   p_joint 4.463333e-02

Outputting figure to mutsig2_images.part000000000192/YTHDF3.3_1777_60000_0.33263_0.027133_0.044633.png
                gene_name: YTHDF3
               theta_stop: 0.096 
                    nperm: 60000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.027 
      ci_cons_bounds_left: 0.026 
     ci_cons_bounds_right: 0.028 
                  p_joint: 0.045 
     ci_joint_bounds_left: 0.043 
    ci_joint_bounds_right: 0.046 

Current progress: 62 percent done.
ZBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.236221e-02	ci left: 9.038097e-01	ci right 9.151504e-01	k: 9096	n:10000
KS ci ratio: 2.545351e-02	ci left: 6.943394e-01	ci right 7.123420e-01	k: 7034	n:10000
ZBP1   10000 perm   1 sec   (6737 perm/sec)   p_kst 7.034000e-01   p_cons 9.096000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000192/ZBP1.3_1399_10000_0.7034_0.9096_1.png
                gene_name: ZBP1
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
XPA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.668597e-01	ci left: 4.792139e-02	ci right 5.674170e-02	k: 522	n:10000
Cons ci ratio: 3.713756e-03	ci left: 9.891692e-01	ci right 9.929363e-01	k: 9912	n:10000
KS ci ratio: 6.614075e-01	ci left: 2.355713e-03	ci right 4.747948e-03	k: 34	n:10000
XPA   10000 perm   1 sec   (7275 perm/sec)   p_kst 3.400000e-03   p_cons 9.912000e-01   p_joint 5.220000e-02

Joint ci ratio: 1.196902e-01	ci left: 4.784576e-02	ci right 5.398563e-02	k: 1017	n:20000
Cons ci ratio: 2.976176e-03	ci left: 9.870837e-01	ci right 9.900717e-01	k: 19773	n:20000
KS ci ratio: 4.293715e-01	ci left: 3.262140e-03	ci right 5.086662e-03	k: 82	n:20000
XPA   20000 perm   3 sec   (6232 perm/sec)   p_kst 4.100000e-03   p_cons 9.886500e-01   p_joint 5.085000e-02

Joint ci ratio: 9.981082e-02	ci left: 4.645421e-02	ci right 5.136696e-02	k: 1466	n:30000
Cons ci ratio: 2.364607e-03	ci left: 9.880002e-01	ci right 9.903703e-01	k: 29677	n:30000
KS ci ratio: 3.457367e-01	ci left: 3.530325e-03	ci right 5.034838e-03	k: 127	n:30000
XPA   30000 perm   5 sec   (5889 perm/sec)   p_kst 4.233333e-03   p_cons 9.892333e-01   p_joint 4.886667e-02

Joint ci ratio: 8.636941e-02	ci left: 4.685586e-02	ci right 5.110992e-02	k: 1958	n:40000
Cons ci ratio: 2.052639e-03	ci left: 9.881121e-01	ci right 9.901659e-01	k: 39567	n:40000
KS ci ratio: 2.907077e-01	ci left: 3.867775e-03	ci right 5.205722e-03	k: 180	n:40000
XPA   40000 perm   7 sec   (5664 perm/sec)   p_kst 4.500000e-03   p_cons 9.891750e-01   p_joint 4.895000e-02

Joint ci ratio: 6.935131e-02	ci left: 5.797331e-02	ci right 6.215795e-02	k: 3002	n:50000
Cons ci ratio: 1.828246e-03	ci left: 9.883175e-01	ci right 9.901450e-01	k: 49463	n:50000
KS ci ratio: 2.607421e-01	ci left: 3.913558e-03	ci right 5.105096e-03	k: 224	n:50000
XPA   50000 perm   9 sec   (5471 perm/sec)   p_kst 4.480000e-03   p_cons 9.892600e-01   p_joint 6.004000e-02

Joint ci ratio: 6.282435e-02	ci left: 5.901582e-02	ci right 6.286012e-02	k: 3655	n:60000
Cons ci ratio: 1.662945e-03	ci left: 9.884789e-01	ci right 9.901399e-01	k: 59360	n:60000
KS ci ratio: 2.332974e-01	ci left: 4.137076e-03	ci right 5.245005e-03	k: 280	n:60000
XPA   60000 perm   11 sec   (5311 perm/sec)   p_kst 4.666667e-03   p_cons 9.893333e-01   p_joint 6.091667e-02

Joint ci ratio: 5.807957e-02	ci left: 5.932268e-02	ci right 6.288524e-02	k: 4276	n:70000
Cons ci ratio: 1.542889e-03	ci left: 9.884953e-01	ci right 9.900352e-01	k: 69250	n:70000
KS ci ratio: 2.172717e-01	ci left: 4.125719e-03	ci right 5.144584e-03	k: 323	n:70000
XPA   70000 perm   14 sec   (5122 perm/sec)   p_kst 4.614286e-03   p_cons 9.892857e-01   p_joint 6.108571e-02

Joint ci ratio: 5.441155e-02	ci left: 5.926486e-02	ci right 6.259207e-02	k: 4873	n:80000
Cons ci ratio: 1.448096e-03	ci left: 9.884724e-01	ci right 9.899168e-01	k: 79137	n:80000
KS ci ratio: 2.022228e-01	ci left: 4.202227e-03	ci right 5.159238e-03	k: 373	n:80000
XPA   80000 perm   16 sec   (5003 perm/sec)   p_kst 4.662500e-03   p_cons 9.892125e-01   p_joint 6.091250e-02

Joint ci ratio: 5.142594e-02	ci left: 5.908276e-02	ci right 6.221230e-02	k: 5457	n:90000
Cons ci ratio: 1.365992e-03	ci left: 9.885032e-01	ci right 9.898650e-01	k: 89028	n:90000
KS ci ratio: 1.896974e-01	ci left: 4.274215e-03	ci right 5.180384e-03	k: 424	n:90000
XPA   90000 perm   18 sec   (4885 perm/sec)   p_kst 4.711111e-03   p_cons 9.892000e-01   p_joint 6.063333e-02

Joint ci ratio: 4.872047e-02	ci left: 5.931679e-02	ci right 6.228875e-02	k: 6079	n:100000
Cons ci ratio: 1.300669e-03	ci left: 9.884576e-01	ci right 9.897537e-01	k: 98912	n:100000
KS ci ratio: 1.813616e-01	ci left: 4.228213e-03	ci right 5.080910e-03	k: 464	n:100000
XPA   100000 perm   21 sec   (4774 perm/sec)   p_kst 4.640000e-03   p_cons 9.891200e-01   p_joint 6.079000e-02

Joint ci ratio: 4.643838e-02	ci left: 5.942187e-02	ci right 6.225589e-02	k: 6691	n:110000
Cons ci ratio: 1.243852e-03	ci left: 9.884221e-01	ci right 9.896610e-01	k: 108796	n:110000
KS ci ratio: 1.736909e-01	ci left: 4.208683e-03	ci right 5.017777e-03	k: 506	n:110000
XPA   110000 perm   24 sec   (4675 perm/sec)   p_kst 4.600000e-03   p_cons 9.890545e-01   p_joint 6.082727e-02

Joint ci ratio: 4.449826e-02	ci left: 5.938845e-02	ci right 6.209949e-02	k: 7288	n:120000
Cons ci ratio: 1.187440e-03	ci left: 9.885135e-01	ci right 9.896960e-01	k: 118694	n:120000
KS ci ratio: 1.672240e-01	ci left: 4.177069e-03	ci right 4.947175e-03	k: 546	n:120000
XPA   120000 perm   26 sec   (4572 perm/sec)   p_kst 4.550000e-03   p_cons 9.891167e-01   p_joint 6.073333e-02

Joint ci ratio: 4.276818e-02	ci left: 5.940035e-02	ci right 6.200390e-02	k: 7890	n:130000
Cons ci ratio: 1.153048e-03	ci left: 9.882998e-01	ci right 9.894475e-01	k: 128555	n:130000
KS ci ratio: 1.595295e-01	ci left: 4.254177e-03	ci right 4.998954e-03	k: 600	n:130000
XPA   130000 perm   29 sec   (4473 perm/sec)   p_kst 4.615385e-03   p_cons 9.888846e-01   p_joint 6.069231e-02

Joint ci ratio: 4.124088e-02	ci left: 5.936987e-02	ci right 6.187694e-02	k: 8486	n:140000
Cons ci ratio: 1.007145e-03	ci left: 9.903374e-01	ci right 9.913422e-01	k: 138719	n:140000
KS ci ratio: 1.542338e-01	ci left: 4.238529e-03	ci right 4.953656e-03	k: 642	n:140000
XPA   140000 perm   32 sec   (4386 perm/sec)   p_kst 4.585714e-03   p_cons 9.908500e-01   p_joint 6.061429e-02

Joint ci ratio: 3.988035e-02	ci left: 5.930527e-02	ci right 6.172508e-02	k: 9076	n:150000
Cons ci ratio: 9.720758e-04	ci left: 9.903723e-01	ci right 9.913419e-01	k: 148630	n:150000
KS ci ratio: 1.497624e-01	ci left: 4.206067e-03	ci right 4.893300e-03	k: 681	n:150000
XPA   150000 perm   35 sec   (4297 perm/sec)   p_kst 4.540000e-03   p_cons 9.908667e-01   p_joint 6.050667e-02

Joint ci ratio: 3.853385e-02	ci left: 5.957820e-02	ci right 6.192525e-02	k: 9719	n:160000
Cons ci ratio: 9.371738e-04	ci left: 9.904674e-01	ci right 9.914021e-01	k: 158551	n:160000
KS ci ratio: 1.434761e-01	ci left: 4.310472e-03	ci right 4.982671e-03	k: 742	n:160000
XPA   160000 perm   38 sec   (4216 perm/sec)   p_kst 4.637500e-03   p_cons 9.909438e-01   p_joint 6.074375e-02

Joint ci ratio: 3.741130e-02	ci left: 5.952868e-02	ci right 6.180398e-02	k: 10312	n:170000
Cons ci ratio: 9.051271e-04	ci left: 9.905638e-01	ci right 9.914664e-01	k: 168474	n:170000
KS ci ratio: 1.394978e-01	ci left: 4.300901e-03	ci right 4.951464e-03	k: 785	n:170000
XPA   170000 perm   41 sec   (4136 perm/sec)   p_kst 4.617647e-03   p_cons 9.910235e-01   p_joint 6.065882e-02

Joint ci ratio: 3.642058e-02	ci left: 5.936437e-02	ci right 6.157204e-02	k: 10883	n:180000
Cons ci ratio: 8.785760e-04	ci left: 9.905984e-01	ci right 9.914745e-01	k: 178388	n:180000
KS ci ratio: 1.362464e-01	ci left: 4.265786e-03	ci right 4.894778e-03	k: 823	n:180000
XPA   180000 perm   44 sec   (4061 perm/sec)   p_kst 4.572222e-03   p_cons 9.910444e-01   p_joint 6.046111e-02

Joint ci ratio: 3.547330e-02	ci left: 5.931725e-02	ci right 6.146461e-02	k: 11473	n:190000
Cons ci ratio: 8.544818e-04	ci left: 9.906244e-01	ci right 9.914763e-01	k: 188301	n:190000
KS ci ratio: 1.316862e-01	ci left: 4.336316e-03	ci right 4.952632e-03	k: 881	n:190000
XPA   190000 perm   48 sec   (3990 perm/sec)   p_kst 4.636842e-03   p_cons 9.910579e-01   p_joint 6.038421e-02

Joint ci ratio: 3.453540e-02	ci left: 5.947389e-02	ci right 6.156887e-02	k: 12103	n:200000
Cons ci ratio: 8.315602e-04	ci left: 9.906633e-01	ci right 9.914923e-01	k: 198217	n:200000
KS ci ratio: 1.274190e-01	ci left: 4.409789e-03	ci right 5.014704e-03	k: 941	n:200000
XPA   200000 perm   51 sec   (3922 perm/sec)   p_kst 4.705000e-03   p_cons 9.910850e-01   p_joint 6.051500e-02

Joint ci ratio: 3.373306e-02	ci left: 5.939897e-02	ci right 6.144175e-02	k: 12687	n:210000
Cons ci ratio: 8.099450e-04	ci left: 9.907085e-01	ci right 9.915159e-01	k: 208135	n:210000
KS ci ratio: 1.245445e-01	ci left: 4.402719e-03	ci right 4.992034e-03	k: 985	n:210000
XPA   210000 perm   55 sec   (3853 perm/sec)   p_kst 4.690476e-03   p_cons 9.911190e-01   p_joint 6.041429e-02

Joint ci ratio: 3.288145e-02	ci left: 5.968319e-02	ci right 6.168295e-02	k: 13349	n:220000
Cons ci ratio: 7.895128e-04	ci left: 9.907591e-01	ci right 9.915460e-01	k: 218055	n:220000
KS ci ratio: 1.206268e-01	ci left: 4.489003e-03	ci right 5.069618e-03	k: 1050	n:220000
XPA   220000 perm   58 sec   (3788 perm/sec)   p_kst 4.772727e-03   p_cons 9.911591e-01   p_joint 6.067727e-02

Joint ci ratio: 3.214376e-02	ci left: 5.975773e-02	ci right 6.171423e-02	k: 13968	n:230000
Cons ci ratio: 7.718806e-04	ci left: 9.907744e-01	ci right 9.915436e-01	k: 227968	n:230000
KS ci ratio: 1.178554e-01	ci left: 4.504738e-03	ci right 5.073070e-03	k: 1100	n:230000
XPA   230000 perm   62 sec   (3724 perm/sec)   p_kst 4.782609e-03   p_cons 9.911652e-01   p_joint 6.073043e-02

Joint ci ratio: 3.146623e-02	ci left: 5.978102e-02	ci right 6.169628e-02	k: 14576	n:240000
Cons ci ratio: 7.573536e-04	ci left: 9.907417e-01	ci right 9.914964e-01	k: 237870	n:240000
KS ci ratio: 1.150159e-01	ci left: 4.539538e-03	ci right 5.097524e-03	k: 1155	n:240000
XPA   240000 perm   66 sec   (3662 perm/sec)   p_kst 4.812500e-03   p_cons 9.911250e-01   p_joint 6.073333e-02

Joint ci ratio: 3.083413e-02	ci left: 5.978695e-02	ci right 6.166325e-02	k: 15180	n:250000
Cons ci ratio: 7.393845e-04	ci left: 9.908139e-01	ci right 9.915506e-01	k: 247797	n:250000
KS ci ratio: 1.126529e-01	ci left: 4.548377e-03	ci right 5.095200e-03	k: 1204	n:250000
XPA   250000 perm   69 sec   (3600 perm/sec)   p_kst 4.816000e-03   p_cons 9.911880e-01   p_joint 6.072000e-02

Joint ci ratio: 3.025499e-02	ci left: 5.973169e-02	ci right 6.157042e-02	k: 15768	n:260000
Cons ci ratio: 7.267541e-04	ci left: 9.907786e-01	ci right 9.915027e-01	k: 257698	n:260000
KS ci ratio: 1.107409e-01	ci left: 4.530462e-03	ci right 5.065284e-03	k: 1246	n:260000
XPA   260000 perm   73 sec   (3546 perm/sec)   p_kst 4.792308e-03   p_cons 9.911462e-01   p_joint 6.064615e-02

Joint ci ratio: 2.965907e-02	ci left: 5.986473e-02	ci right 6.167064e-02	k: 16406	n:270000
Cons ci ratio: 7.115761e-04	ci left: 9.908254e-01	ci right 9.915343e-01	k: 267620	n:270000
KS ci ratio: 1.090932e-01	ci left: 4.499535e-03	ci right 5.022294e-03	k: 1284	n:270000
XPA   270000 perm   77 sec   (3491 perm/sec)   p_kst 4.755556e-03   p_cons 9.911852e-01   p_joint 6.076296e-02

Joint ci ratio: 2.911431e-02	ci left: 5.992119e-02	ci right 6.169505e-02	k: 17025	n:280000
Cons ci ratio: 6.981564e-04	ci left: 9.908471e-01	ci right 9.915426e-01	k: 277536	n:280000
KS ci ratio: 1.068696e-01	ci left: 4.526489e-03	ci right 5.040986e-03	k: 1338	n:280000
XPA   280000 perm   81 sec   (3437 perm/sec)   p_kst 4.778571e-03   p_cons 9.912000e-01   p_joint 6.080357e-02

Joint ci ratio: 2.862182e-02	ci left: 5.988157e-02	ci right 6.162377e-02	k: 17617	n:290000
Cons ci ratio: 6.869572e-04	ci left: 9.908288e-01	ci right 9.915130e-01	k: 287441	n:290000
KS ci ratio: 1.051947e-01	ci left: 4.514745e-03	ci right 5.019368e-03	k: 1381	n:290000
XPA   290000 perm   86 sec   (3387 perm/sec)   p_kst 4.762069e-03   p_cons 9.911759e-01   p_joint 6.074828e-02

Joint ci ratio: 2.811327e-02	ci left: 6.000708e-02	ci right 6.172141e-02	k: 18258	n:300000
Cons ci ratio: 6.764041e-04	ci left: 9.908084e-01	ci right 9.914821e-01	k: 297345	n:300000
KS ci ratio: 1.033778e-01	ci left: 4.523328e-03	ci right 5.019647e-03	k: 1430	n:300000
XPA   300000 perm   90 sec   (3338 perm/sec)   p_kst 4.766667e-03   p_cons 9.911500e-01   p_joint 6.086000e-02

Joint ci ratio: 2.763400e-02	ci left: 6.011193e-02	ci right 6.179952e-02	k: 18895	n:310000
Cons ci ratio: 6.647280e-04	ci left: 9.908321e-01	ci right 9.914941e-01	k: 307262	n:310000
KS ci ratio: 1.015829e-01	ci left: 4.537715e-03	ci right 5.026452e-03	k: 1481	n:310000
XPA   310000 perm   94 sec   (3290 perm/sec)   p_kst 4.777419e-03   p_cons 9.911677e-01   p_joint 6.095161e-02

Joint ci ratio: 2.719772e-02	ci left: 6.012972e-02	ci right 6.179074e-02	k: 19506	n:320000
Cons ci ratio: 6.525816e-04	ci left: 9.908831e-01	ci right 9.915330e-01	k: 317188	n:320000
KS ci ratio: 1.001083e-01	ci left: 4.529943e-03	ci right 5.010344e-03	k: 1525	n:320000
XPA   320000 perm   99 sec   (3244 perm/sec)   p_kst 4.765625e-03   p_cons 9.912125e-01   p_joint 6.095625e-02

Joint ci ratio: 2.678146e-02	ci left: 6.014663e-02	ci right 6.178230e-02	k: 20117	n:330000
Cons ci ratio: 6.420697e-04	ci left: 9.909032e-01	ci right 9.915426e-01	k: 327105	n:330000
KS ci ratio: 9.866454e-02	ci left: 4.525645e-03	ci right 4.998268e-03	k: 1570	n:330000
XPA   330000 perm   103 sec   (3199 perm/sec)   p_kst 4.757576e-03   p_cons 9.912273e-01   p_joint 6.096061e-02

Outputting figure to mutsig2_images.part000000000192/XPA.2_846_330000_0.0047576_0.99123_0.060961.png
                gene_name: XPA
               theta_stop: 0.099 
                    nperm: 330000 
                     p_ks: 0.0048 
        ci_ks_bounds_left: 0.0045 
       ci_ks_bounds_right: 0.0050 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.061 
     ci_joint_bounds_left: 0.060 
    ci_joint_bounds_right: 0.062 

Current progress: 68 percent done.
XPO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.607094e-02	ci left: 6.841568e-01	ci right 7.023305e-01	k: 6933	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
XPO1   10000 perm   2 sec   (5433 perm/sec)   p_kst 1   p_cons 6.933000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000192/XPO1.2_3312_10000_1_0.6933_1.png
                gene_name: XPO1
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
XPO5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.428612e-02	ci left: 8.763339e-01	ci right 8.890423e-01	k: 8828	n:10000
KS ci ratio: 1.789283e-02	ci left: 8.200516e-01	ci right 8.349571e-01	k: 8276	n:10000
XPO5   10000 perm   2 sec   (5198 perm/sec)   p_kst 8.276000e-01   p_cons 8.828000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000192/XPO5.2_3743_10000_0.8276_0.8828_1.png
                gene_name: XPO5
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
XPO6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.317620e-02	ci left: 5.728619e-01	ci right 5.922899e-01	k: 5826	n:10000
KS ci ratio: 2.083093e-02	ci left: 7.715474e-01	ci right 7.878893e-01	k: 7798	n:10000
XPO6   10000 perm   2 sec   (5590 perm/sec)   p_kst 7.798000e-01   p_cons 5.826000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000192/XPO6.2_3474_10000_0.7798_0.5826_1.png
                gene_name: XPO6
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
XRCC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.537925e-01	ci left: 5.629122e-02	ci right 6.576649e-02	k: 609	n:10000
Cons ci ratio: 2.121886e-01	ci left: 2.949052e-02	ci right 3.658492e-02	k: 329	n:10000
KS ci ratio: 1.055019e-01	ci left: 1.148645e-01	ci right 1.277571e-01	k: 1212	n:10000
XRCC5   10000 perm   2 sec   (5978 perm/sec)   p_kst 1.212000e-01   p_cons 3.290000e-02   p_joint 6.090000e-02

Joint ci ratio: 7.781324e-02	ci left: 1.082015e-01	ci right 1.170115e-01	k: 2251	n:20000
Cons ci ratio: 1.599623e-01	ci left: 2.681414e-02	ci right 3.152408e-02	k: 582	n:20000
KS ci ratio: 7.416821e-02	ci left: 1.179862e-01	ci right 1.271238e-01	k: 2450	n:20000
XRCC5   20000 perm   4 sec   (5253 perm/sec)   p_kst 1.225000e-01   p_cons 2.910000e-02   p_joint 1.125500e-01

Joint ci ratio: 9.557049e-02	ci left: 5.055674e-02	ci right 5.566357e-02	k: 1592	n:30000
Cons ci ratio: 1.290598e-01	ci left: 2.790488e-02	ci right 3.178688e-02	k: 894	n:30000
KS ci ratio: 6.114270e-02	ci left: 1.168035e-01	ci right 1.242035e-01	k: 3614	n:30000
XRCC5   30000 perm   6 sec   (4978 perm/sec)   p_kst 1.204667e-01   p_cons 2.980000e-02   p_joint 5.306667e-02

Joint ci ratio: 1.489287e-01	ci left: 1.575582e-02	ci right 1.831498e-02	k: 680	n:40000
Cons ci ratio: 1.039588e-01	ci left: 3.253782e-02	ci right 3.613020e-02	k: 1372	n:40000
KS ci ratio: 5.310171e-02	ci left: 1.167070e-01	ci right 1.230983e-01	k: 4795	n:40000
XRCC5   40000 perm   8 sec   (4808 perm/sec)   p_kst 1.198750e-01   p_cons 3.430000e-02   p_joint 1.700000e-02

Joint ci ratio: 1.556893e-01	ci left: 1.154454e-02	ci right 1.351266e-02	k: 625	n:50000
Cons ci ratio: 9.330092e-02	ci left: 3.250678e-02	ci right 3.570761e-02	k: 1704	n:50000
KS ci ratio: 4.743280e-02	ci left: 1.173221e-01	ci right 1.230421e-01	k: 6008	n:50000
XRCC5   50000 perm   11 sec   (4659 perm/sec)   p_kst 1.201600e-01   p_cons 3.408000e-02   p_joint 1.250000e-02

Joint ci ratio: 1.527999e-01	ci left: 1.002043e-02	ci right 1.169406e-02	k: 650	n:60000
Cons ci ratio: 8.530140e-02	ci left: 3.254781e-02	ci right 3.546416e-02	k: 2039	n:60000
KS ci ratio: 4.317698e-02	ci left: 1.181694e-01	ci right 1.234007e-01	k: 7246	n:60000
XRCC5   60000 perm   13 sec   (4540 perm/sec)   p_kst 1.207667e-01   p_cons 3.398333e-02   p_joint 1.083333e-02

Joint ci ratio: 1.371919e-01	ci left: 1.073712e-02	ci right 1.233233e-02	k: 806	n:70000
Cons ci ratio: 7.914613e-02	ci left: 3.251552e-02	ci right 3.520901e-02	k: 2369	n:70000
KS ci ratio: 3.999792e-02	ci left: 1.182386e-01	ci right 1.230786e-01	k: 8445	n:70000
XRCC5   70000 perm   16 sec   (4443 perm/sec)   p_kst 1.206429e-01   p_cons 3.384286e-02   p_joint 1.151429e-02

Joint ci ratio: 1.292048e-01	ci left: 1.063957e-02	ci right 1.212119e-02	k: 909	n:80000
Cons ci ratio: 7.438442e-02	ci left: 3.230063e-02	ci right 3.480835e-02	k: 2683	n:80000
KS ci ratio: 3.752431e-02	ci left: 1.177805e-01	ci right 1.222971e-01	k: 9602	n:80000
XRCC5   80000 perm   18 sec   (4348 perm/sec)   p_kst 1.200250e-01   p_cons 3.353750e-02   p_joint 1.136250e-02

Joint ci ratio: 1.225900e-01	ci left: 1.054425e-02	ci right 1.193196e-02	k: 1010	n:90000
Cons ci ratio: 7.017244e-02	ci left: 3.233392e-02	ci right 3.469627e-02	k: 3015	n:90000
KS ci ratio: 3.531029e-02	ci left: 1.183137e-01	ci right 1.225775e-01	k: 10839	n:90000
XRCC5   90000 perm   21 sec   (4259 perm/sec)   p_kst 1.204333e-01   p_cons 3.350000e-02   p_joint 1.122222e-02

Joint ci ratio: 1.205688e-01	ci left: 9.828963e-03	ci right 1.109967e-02	k: 1045	n:100000
Cons ci ratio: 6.658288e-02	ci left: 3.238346e-02	ci right 3.462370e-02	k: 3349	n:100000
KS ci ratio: 3.355763e-02	ci left: 1.180515e-01	ci right 1.220906e-01	k: 12006	n:100000
XRCC5   100000 perm   24 sec   (4173 perm/sec)   p_kst 1.200600e-01   p_cons 3.349000e-02   p_joint 1.045000e-02

Joint ci ratio: 1.048584e-01	ci left: 1.188719e-02	ci right 1.321142e-02	k: 1379	n:110000
Cons ci ratio: 6.351106e-02	ci left: 3.240862e-02	ci right 3.454335e-02	k: 3681	n:110000
KS ci ratio: 3.192143e-02	ci left: 1.186358e-01	ci right 1.224933e-01	k: 13261	n:110000
XRCC5   110000 perm   27 sec   (4093 perm/sec)   p_kst 1.205545e-01   p_cons 3.346364e-02   p_joint 1.253636e-02

Joint ci ratio: 9.812397e-02	ci left: 1.248056e-02	ci right 1.377646e-02	k: 1574	n:120000
Cons ci ratio: 6.061023e-02	ci left: 3.266147e-02	ci right 3.471114e-02	k: 4041	n:120000
KS ci ratio: 3.056922e-02	ci left: 1.186714e-01	ci right 1.223636e-01	k: 14461	n:120000
XRCC5   120000 perm   30 sec   (4018 perm/sec)   p_kst 1.205083e-01   p_cons 3.367500e-02   p_joint 1.311667e-02

Outputting figure to mutsig2_images.part000000000192/XRCC5.2_2283_120000_0.12051_0.033675_0.013117.png
                gene_name: XRCC5
               theta_stop: 0.098 
                    nperm: 120000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.034 
      ci_cons_bounds_left: 0.033 
     ci_cons_bounds_right: 0.035 
                  p_joint: 0.013 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.014 

Current progress: 78 percent done.
YAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.583820e-02	ci left: 8.527383e-01	ci right 8.664514e-01	k: 8597	n:10000
Cons ci ratio: 6.871987e-02	ci left: 2.369909e-01	ci right 2.539576e-01	k: 2454	n:10000
KS ci ratio: 5.063989e-02	ci left: 3.651011e-01	ci right 3.841720e-01	k: 3746	n:10000
YAP1   10000 perm   2 sec   (6010 perm/sec)   p_kst 3.746000e-01   p_cons 2.454000e-01   p_joint 8.597000e-01

Outputting figure to mutsig2_images.part000000000192/YAP1.2_1563_10000_0.3746_0.2454_0.8597.png
                gene_name: YAP1
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 80 percent done.
YARS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.958796e-02	ci left: 4.851533e-01	ci right 5.048496e-01	k: 4950	n:10000
Cons ci ratio: 9.320203e-02	ci left: 1.432503e-01	ci right 1.573541e-01	k: 1502	n:10000
KS ci ratio: 3.780034e-02	ci left: 5.082525e-01	ci right 5.279369e-01	k: 5181	n:10000
YARS2   10000 perm   2 sec   (6470 perm/sec)   p_kst 5.181000e-01   p_cons 1.502000e-01   p_joint 4.950000e-01

Outputting figure to mutsig2_images.part000000000192/YARS2.2_1454_10000_0.5181_0.1502_0.495.png
                gene_name: YARS2
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.50 

Current progress: 82 percent done.
YBX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.362105e-01	ci left: 2.362888e-02	ci right 3.005075e-02	k: 267	n:10000
Cons ci ratio: 2.736895e-01	ci left: 1.734654e-02	ci right 2.293792e-02	k: 200	n:10000
KS ci ratio: 3.898308e-02	ci left: 4.928507e-01	ci right 5.125477e-01	k: 5027	n:10000
YBX1   10000 perm   1 sec   (6815 perm/sec)   p_kst 5.027000e-01   p_cons 2.000000e-02   p_joint 2.670000e-02

Joint ci ratio: 1.648311e-01	ci left: 2.522947e-02	ci right 2.980929e-02	k: 549	n:20000
Cons ci ratio: 1.915958e-01	ci left: 1.853343e-02	ci right 2.250769e-02	k: 409	n:20000
KS ci ratio: 2.752043e-02	ci left: 4.965956e-01	ci right 5.105034e-01	k: 10071	n:20000
YBX1   20000 perm   3 sec   (5933 perm/sec)   p_kst 5.035500e-01   p_cons 2.045000e-02   p_joint 2.745000e-02

Joint ci ratio: 1.450478e-01	ci left: 2.204044e-02	ci right 2.551929e-02	k: 712	n:30000
Cons ci ratio: 1.566989e-01	ci left: 1.883025e-02	ci right 2.206356e-02	k: 612	n:30000
KS ci ratio: 2.252714e-02	ci left: 4.966255e-01	ci right 5.079741e-01	k: 15069	n:30000
YBX1   30000 perm   5 sec   (5595 perm/sec)   p_kst 5.023000e-01   p_cons 2.040000e-02   p_joint 2.373333e-02

Joint ci ratio: 1.202591e-01	ci left: 2.431688e-02	ci right 2.745246e-02	k: 1034	n:40000
Cons ci ratio: 1.378149e-01	ci left: 1.845721e-02	ci right 2.121312e-02	k: 792	n:40000
KS ci ratio: 1.969947e-02	ci left: 4.925380e-01	ci right 5.023624e-01	k: 19898	n:40000
YBX1   40000 perm   7 sec   (5381 perm/sec)   p_kst 4.974500e-01   p_cons 1.980000e-02   p_joint 2.585000e-02

Joint ci ratio: 1.133516e-01	ci left: 2.203435e-02	ci right 2.470139e-02	k: 1167	n:50000
Cons ci ratio: 1.234086e-01	ci left: 1.855805e-02	ci right 2.101815e-02	k: 988	n:50000
KS ci ratio: 1.759487e-02	ci left: 4.937676e-01	ci right 5.025526e-01	k: 24908	n:50000
YBX1   50000 perm   10 sec   (5202 perm/sec)   p_kst 4.981600e-01   p_cons 1.976000e-02   p_joint 2.334000e-02

Joint ci ratio: 1.032345e-01	ci left: 2.225391e-02	ci right 2.469249e-02	k: 1407	n:60000
Cons ci ratio: 1.122134e-01	ci left: 1.881368e-02	ci right 2.106643e-02	k: 1195	n:60000
KS ci ratio: 1.604192e-02	ci left: 4.947744e-01	ci right 5.027924e-01	k: 29927	n:60000
YBX1   60000 perm   12 sec   (5050 perm/sec)   p_kst 4.987833e-01   p_cons 1.991667e-02   p_joint 2.345000e-02

Joint ci ratio: 9.474328e-02	ci left: 2.273928e-02	ci right 2.501470e-02	k: 1670	n:70000
Cons ci ratio: 1.027067e-01	ci left: 1.933770e-02	ci right 2.144518e-02	k: 1426	n:70000
KS ci ratio: 1.482859e-02	ci left: 4.958604e-01	ci right 5.032825e-01	k: 34970	n:70000
YBX1   70000 perm   14 sec   (4921 perm/sec)   p_kst 4.995714e-01   p_cons 2.037143e-02   p_joint 2.385714e-02

Joint ci ratio: 8.873657e-02	ci left: 2.275481e-02	ci right 2.487992e-02	k: 1904	n:80000
Cons ci ratio: 9.621975e-02	ci left: 1.934615e-02	ci right 2.131385e-02	k: 1625	n:80000
KS ci ratio: 1.387082e-02	ci left: 4.961041e-01	ci right 5.030460e-01	k: 39966	n:80000
YBX1   80000 perm   17 sec   (4797 perm/sec)   p_kst 4.995750e-01   p_cons 2.031250e-02   p_joint 2.380000e-02

Outputting figure to mutsig2_images.part000000000192/YBX1.2_1003_80000_0.49957_0.020313_0.0238.png
                gene_name: YBX1
               theta_stop: 0.096 
                    nperm: 80000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.020 
      ci_cons_bounds_left: 0.019 
     ci_cons_bounds_right: 0.021 
                  p_joint: 0.024 
     ci_joint_bounds_left: 0.023 
    ci_joint_bounds_right: 0.025 

Current progress: 85 percent done.
YIPF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.377898e-02	ci left: 4.351271e-01	ci right 4.547050e-01	k: 4449	n:10000
KS ci ratio: 4.646584e-02	ci left: 4.060162e-01	ci right 4.254329e-01	k: 4157	n:10000
YIPF4   10000 perm   1 sec   (6900 perm/sec)   p_kst 4.157000e-01   p_cons 4.449000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000192/YIPF4.2_759_10000_0.4157_0.4449_1.png
                gene_name: YIPF4
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.45 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
YPEL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.060242e-02	ci left: 9.267855e-01	ci right 9.367612e-01	k: 9319	n:10000
KS ci ratio: 9.508989e-03	ci left: 9.398315e-01	ci right 9.489074e-01	k: 9445	n:10000
YPEL2   10000 perm   1 sec   (7245 perm/sec)   p_kst 9.445000e-01   p_cons 9.319000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000192/YPEL2.2_376_10000_0.9445_0.9319_1.png
                gene_name: YPEL2
               theta_stop: 0.011 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
YPEL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.850717e-02	ci left: 1.299255e-01	ci right 1.434869e-01	k: 1366	n:10000
Cons ci ratio: 5.979314e-02	ci left: 2.915232e-01	ci right 3.095931e-01	k: 3005	n:10000
KS ci ratio: 1.377594e-01	ci left: 6.971834e-02	ci right 8.013090e-02	k: 748	n:10000
YPEL4   10000 perm   1 sec   (7296 perm/sec)   p_kst 7.480000e-02   p_cons 3.005000e-01   p_joint 1.366000e-01

Joint ci ratio: 9.675099e-02	ci left: 7.216868e-02	ci right 7.955520e-02	k: 1516	n:20000
Cons ci ratio: 3.978339e-02	ci left: 3.202503e-01	ci right 3.333001e-01	k: 6535	n:20000
KS ci ratio: 9.675099e-02	ci left: 7.216868e-02	ci right 7.955520e-02	k: 1516	n:20000
YPEL4   20000 perm   3 sec   (6272 perm/sec)   p_kst 7.580000e-02   p_cons 3.267500e-01   p_joint 7.580000e-02

Outputting figure to mutsig2_images.part000000000192/YPEL4.2_400_20000_0.0758_0.32675_0.0758.png
                gene_name: YPEL4
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.076 
        ci_ks_bounds_left: 0.072 
       ci_ks_bounds_right: 0.080 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.076 
     ci_joint_bounds_left: 0.072 
    ci_joint_bounds_right: 0.080 

Current progress: 92 percent done.
YTHDC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.953727e-03	ci left: 9.346478e-01	ci right 9.440942e-01	k: 9395	n:10000
Cons ci ratio: 3.626986e-02	ci left: 5.288695e-01	ci right 5.485080e-01	k: 5387	n:10000
KS ci ratio: 2.032688e-02	ci left: 7.799572e-01	ci right 7.960747e-01	k: 7881	n:10000
YTHDC1   10000 perm   2 sec   (6180 perm/sec)   p_kst 7.881000e-01   p_cons 5.387000e-01   p_joint 9.395000e-01

Outputting figure to mutsig2_images.part000000000192/YTHDC1.2_2252_10000_0.7881_0.5387_0.9395.png
                gene_name: YTHDC1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 95 percent done.
ZBTB10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.669516e-02	ci left: 5.230630e-01	ci right 5.427178e-01	k: 5329	n:10000
KS ci ratio: 3.519609e-02	ci left: 5.437922e-01	ci right 5.633765e-01	k: 5536	n:10000
ZBTB10   10000 perm   2 sec   (5459 perm/sec)   p_kst 5.536000e-01   p_cons 5.329000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000192/ZBTB10.2_2640_10000_0.5536_0.5329_1.png
                gene_name: ZBTB10
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
ZBTB12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.836104e-02	ci left: 8.124288e-01	ci right 8.275843e-01	k: 8201	n:10000
Cons ci ratio: 8.609581e-02	ci left: 1.642567e-01	ci right 1.791350e-01	k: 1716	n:10000
KS ci ratio: 3.330595e-02	ci left: 5.709563e-01	ci right 5.903967e-01	k: 5807	n:10000
ZBTB12   10000 perm   1 sec   (6833 perm/sec)   p_kst 5.807000e-01   p_cons 1.716000e-01   p_joint 8.201000e-01

Outputting figure to mutsig2_images.part000000000192/ZBTB12.2_1384_10000_0.5807_0.1716_0.8201.png
                gene_name: ZBTB12
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000192
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 192 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1725>
Subject: Job 8004704: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1725>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000193> was used as the working directory.
Started at Sun Nov 11 15:25:52 2012
Results reported at Sun Nov 11 15:58:45 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000193.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000193.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 193  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000193.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1982.55 sec.
    Max Memory :      4771 MB
    Max Swap   :      7116 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
193
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 193
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 193: processing genes 17371 - 17461
Calculating significance of each gene.
Using projection method.
17371	ZBTB2	6.538885e-01
17372	ZBTB20	1
17373	ZBTB22	9.386525e-01
17374	ZBTB24	5.363220e-01
17375	ZBTB25	1
17376	ZBTB26	1
17377	ZBTB3	7.534661e-01
17378	ZBTB32	1
17379	ZBTB33	8.630088e-01
17380	ZBTB34	1
17381	ZBTB37	8.216193e-01
17382	ZBTB38	9.824365e-01
17383	ZBTB39	1
17384	ZBTB4	9.163373e-01
17385	ZBTB40	9.620142e-01
17386	ZBTB41	7.207536e-01
17387	ZBTB43	6.758073e-01
17388	ZBTB44	7.415409e-01
17389	ZBTB45	7.762399e-01
17390	ZBTB46	2.409092e-01
17391	ZBTB47	7.242756e-01
17392	ZBTB48	8.668574e-01
17393	ZBTB49	2.995165e-01
17394	ZBTB5	9.051021e-01
17395	ZBTB6	7.664138e-01
17396	ZBTB7A	3.373448e-01
17397	ZBTB7B	4.581882e-01
17398	ZBTB7C	1
17399	ZBTB8A	3.841244e-01
17400	ZBTB8OS	3.137418e-01
17401	ZBTB9	1.935736e-01
17402	ZC3H10	1
17403	ZC3H11A	4.761545e-01
17404	ZC3H12A	6.466827e-01
17405	ZC3H12B	5.844045e-01
17406	ZC3H12C	4.311471e-01
17407	ZC3H12D	1
17408	ZC3H13	9.310941e-01
17409	ZC3H14	7.024903e-01
17410	ZC3H15	1
17411	ZC3H18	7.125917e-01
17412	ZC3H3	1
17413	ZC3H4	9.435418e-01
17414	ZC3H6	9.275236e-01
17415	ZC3H7A	1
17416	ZC3H7B	1
17417	ZC3H8	1
17418	ZC3HAV1	6.970875e-01
17419	ZC3HAV1L	3.010833e-01
17420	ZC3HC1	8.042121e-01
17421	ZC4H2	3.832386e-01
17422	ZCCHC10	1
17423	ZCCHC11	7.361752e-01
17424	ZCCHC12	6.846902e-02
17425	ZCCHC13	6.461328e-02
17426	ZCCHC14	7.559874e-01
17427	ZCCHC16	1
17428	ZCCHC17	1
17429	ZCCHC18	1
17430	ZCCHC2	9.218734e-01
17431	ZCCHC24	1
17432	ZCCHC3	5.785161e-03
17433	ZCCHC4	1
17434	ZCCHC5	3.145762e-01
17435	ZCCHC6	7.753717e-01
17436	ZCCHC7	3.055496e-01
17437	ZCCHC8	3.769692e-01
17438	ZCCHC9	1
17439	ZCRB1	3.295676e-01
17440	ZCWPW1	9.393636e-01
17441	ZCWPW2	4.173134e-01
17442	ZDBF2	9.986056e-01
17443	ZDHHC1	5.992645e-01
17444	ZDHHC11	1
17445	ZDHHC12	1
17446	ZDHHC13	1
17447	ZDHHC14	5.384914e-01
17448	ZDHHC15	7.525885e-02
17449	ZDHHC16	1
17450	ZDHHC17	2.694470e-03
17451	ZDHHC18	1
17452	ZDHHC19	1
17453	ZDHHC2	1
17454	ZDHHC20	3.352135e-01
17455	ZDHHC21	4.268206e-01
17456	ZDHHC22	1
17457	ZDHHC23	7.306201e-01
17458	ZDHHC24	1
17459	ZDHHC3	1
17460	ZDHHC4	7.388923e-01
17461	ZDHHC5	7.516271e-01
Done

Running MutSig 2:
Scatter job 193: processing genes 17371 - 17461
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ZDBF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.150556e-02	ci left: 5.978492e-01	ci right 6.170882e-01	k: 6075	n:10000
Cons ci ratio: 1.898640e-02	ci left: 8.021712e-01	ci right 8.176478e-01	k: 8100	n:10000
KS ci ratio: 5.082408e-02	ci left: 3.634102e-01	ci right 3.824638e-01	k: 3729	n:10000
ZDBF2   10000 perm   3 sec   (3744 perm/sec)   p_kst 3.729000e-01   p_cons 8.100000e-01   p_joint 6.075000e-01

Outputting figure to mutsig2_images.part000000000193/ZDBF2.18_7077_10000_0.3729_0.81_0.6075.png
                gene_name: ZDBF2
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 2 percent done.
ZDHHC17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.577260e-02	ci left: 2.534019e-01	ci right 2.707369e-01	k: 2620	n:10000
Cons ci ratio: 1.190559e-01	ci left: 9.194847e-02	ci right 1.036870e-01	k: 977	n:10000
KS ci ratio: 6.807679e-02	ci left: 2.404497e-01	ci right 2.574968e-01	k: 2489	n:10000
ZDHHC17   10000 perm   2 sec   (5958 perm/sec)   p_kst 2.489000e-01   p_cons 9.770000e-02   p_joint 2.620000e-01

Joint ci ratio: 6.658401e-02	ci left: 1.427599e-01	ci right 1.526427e-01	k: 2953	n:20000
Cons ci ratio: 8.336270e-02	ci left: 9.538497e-02	ci right 1.037319e-01	k: 1990	n:20000
KS ci ratio: 4.745907e-02	ci left: 2.482759e-01	ci right 2.603956e-01	k: 5086	n:20000
ZDHHC17   20000 perm   4 sec   (5372 perm/sec)   p_kst 2.543000e-01   p_cons 9.950000e-02   p_joint 1.476500e-01

Outputting figure to mutsig2_images.part000000000193/ZDHHC17.7_1967_20000_0.2543_0.0995_0.14765.png
                gene_name: ZDHHC17
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.100 
      ci_cons_bounds_left: 0.095 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 5 percent done.
ZCCHC11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.882037e-02	ci left: 3.823146e-01	ci right 4.015484e-01	k: 3919	n:10000
Cons ci ratio: 6.470164e-02	ci left: 2.597333e-01	ci right 2.772017e-01	k: 2684	n:10000
KS ci ratio: 5.321015e-02	ci left: 3.423355e-01	ci right 3.611510e-01	k: 3517	n:10000
ZCCHC11   10000 perm   2 sec   (4839 perm/sec)   p_kst 3.517000e-01   p_cons 2.684000e-01   p_joint 3.919000e-01

Outputting figure to mutsig2_images.part000000000193/ZCCHC11.6_5054_10000_0.3517_0.2684_0.3919.png
                gene_name: ZCCHC11
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 7 percent done.
ZBTB20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.931551e-02	ci left: 3.775373e-01	ci right 3.967285e-01	k: 3871	n:10000
Cons ci ratio: 9.103792e-02	ci left: 1.492334e-01	ci right 1.635673e-01	k: 1563	n:10000
KS ci ratio: 4.164532e-02	ci left: 4.598782e-01	ci right 4.795394e-01	k: 4697	n:10000
ZBTB20   10000 perm   2 sec   (5942 perm/sec)   p_kst 4.697000e-01   p_cons 1.563000e-01   p_joint 3.871000e-01

Outputting figure to mutsig2_images.part000000000193/ZBTB20.5_2242_10000_0.4697_0.1563_0.3871.png
                gene_name: ZBTB20
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 9 percent done.
ZBTB24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.024266e-02	ci left: 4.769586e-01	ci right 4.966491e-01	k: 4868	n:10000
KS ci ratio: 1.542238e-02	ci left: 8.591667e-01	ci right 8.726194e-01	k: 8660	n:10000
ZBTB24   10000 perm   2 sec   (5504 perm/sec)   p_kst 8.660000e-01   p_cons 4.868000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000193/ZBTB24.5_2168_10000_0.866_0.4868_1.png
                gene_name: ZBTB24
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 11 percent done.
ZBTB38
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.552846e-02	ci left: 8.575336e-01	ci right 8.710534e-01	k: 8644	n:10000
KS ci ratio: 2.229991e-02	ci left: 7.469526e-01	ci right 7.638984e-01	k: 7555	n:10000
ZBTB38   10000 perm   2 sec   (5182 perm/sec)   p_kst 7.555000e-01   p_cons 8.644000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000193/ZBTB38.5_3592_10000_0.7555_0.8644_1.png
                gene_name: ZBTB38
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 14 percent done.
ZBTB49
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.191375e-02	ci left: 4.566832e-01	ci right 4.763364e-01	k: 4665	n:10000
Cons ci ratio: 4.299881e-02	ci left: 4.440068e-01	ci right 4.636202e-01	k: 4538	n:10000
KS ci ratio: 4.336488e-02	ci left: 4.398160e-01	ci right 4.594134e-01	k: 4496	n:10000
ZBTB49   10000 perm   1 sec   (6811 perm/sec)   p_kst 4.496000e-01   p_cons 4.538000e-01   p_joint 4.665000e-01

Outputting figure to mutsig2_images.part000000000193/ZBTB49.5_2326_10000_0.4496_0.4538_0.4665.png
                gene_name: ZBTB49
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 16 percent done.
ZCCHC6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.489961e-02	ci left: 7.035183e-01	ci right 7.213578e-01	k: 7125	n:10000
KS ci ratio: 1.460163e-02	ci left: 8.716295e-01	ci right 8.845493e-01	k: 8782	n:10000
ZCCHC6   10000 perm   2 sec   (4998 perm/sec)   p_kst 8.782000e-01   p_cons 7.125000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000193/ZCCHC6.5_4592_10000_0.8782_0.7125_1.png
                gene_name: ZCCHC6
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 18 percent done.
ZBTB41
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.067185e-02	ci left: 4.716635e-01	ci right 4.913473e-01	k: 4815	n:10000
Cons ci ratio: 5.342080e-02	ci left: 3.405470e-01	ci right 3.593405e-01	k: 3499	n:10000
KS ci ratio: 4.160355e-02	ci left: 4.603775e-01	ci right 4.800399e-01	k: 4702	n:10000
ZBTB41   10000 perm   2 sec   (6097 perm/sec)   p_kst 4.702000e-01   p_cons 3.499000e-01   p_joint 4.815000e-01

Outputting figure to mutsig2_images.part000000000193/ZBTB41.4_2770_10000_0.4702_0.3499_0.4815.png
                gene_name: ZBTB41
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 20 percent done.
ZBTB46
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.764158e-02	ci left: 8.241191e-01	ci right 8.388872e-01	k: 8316	n:10000
Cons ci ratio: 2.745299e-02	ci left: 6.615916e-01	ci right 6.801087e-01	k: 6709	n:10000
KS ci ratio: 2.945480e-02	ci left: 6.295976e-01	ci right 6.485213e-01	k: 6391	n:10000
ZBTB46   10000 perm   2 sec   (6114 perm/sec)   p_kst 6.391000e-01   p_cons 6.709000e-01   p_joint 8.316000e-01

Outputting figure to mutsig2_images.part000000000193/ZBTB46.4_1786_10000_0.6391_0.6709_0.8316.png
                gene_name: ZBTB46
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 23 percent done.
ZBTB9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.293223e-02	ci left: 8.959025e-01	ci right 9.076623e-01	k: 9019	n:10000
KS ci ratio: 2.281878e-02	ci left: 7.382572e-01	ci right 7.553988e-01	k: 7469	n:10000
ZBTB9   10000 perm   2 sec   (6471 perm/sec)   p_kst 7.469000e-01   p_cons 9.019000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000193/ZBTB9.4_1426_10000_0.7469_0.9019_1.png
                gene_name: ZBTB9
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 25 percent done.
ZC3H11A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.889536e-02	ci left: 6.384467e-01	ci right 6.572671e-01	k: 6479	n:10000
Cons ci ratio: 4.492253e-02	ci left: 4.224616e-01	ci right 4.419779e-01	k: 4322	n:10000
KS ci ratio: 2.809562e-02	ci left: 6.512237e-01	ci right 6.698827e-01	k: 6606	n:10000
ZC3H11A   10000 perm   2 sec   (5836 perm/sec)   p_kst 6.606000e-01   p_cons 4.322000e-01   p_joint 6.479000e-01

Outputting figure to mutsig2_images.part000000000193/ZC3H11A.4_2497_10000_0.6606_0.4322_0.6479.png
                gene_name: ZC3H11A
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 27 percent done.
ZC3H12C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.997394e-02	ci left: 6.214554e-01	ci right 6.404682e-01	k: 6310	n:10000
Cons ci ratio: 8.286976e-03	ci left: 9.531520e-01	ci right 9.611789e-01	k: 9573	n:10000
KS ci ratio: 3.893634e-02	ci left: 4.934506e-01	ci right 5.131474e-01	k: 5033	n:10000
ZC3H12C   10000 perm   2 sec   (6015 perm/sec)   p_kst 5.033000e-01   p_cons 9.573000e-01   p_joint 6.310000e-01

Outputting figure to mutsig2_images.part000000000193/ZC3H12C.4_2676_10000_0.5033_0.9573_0.631.png
                gene_name: ZC3H12C
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 30 percent done.
ZC3H13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.470164e-02	ci left: 2.597333e-01	ci right 2.772017e-01	k: 2684	n:10000
Cons ci ratio: 4.022656e-02	ci left: 4.771585e-01	ci right 4.968491e-01	k: 4870	n:10000
KS ci ratio: 9.121080e-02	ci left: 1.487429e-01	ci right 1.630582e-01	k: 1558	n:10000
ZC3H13   10000 perm   2 sec   (4997 perm/sec)   p_kst 1.558000e-01   p_cons 4.870000e-01   p_joint 2.684000e-01

Outputting figure to mutsig2_images.part000000000193/ZC3H13.4_4759_10000_0.1558_0.487_0.2684.png
                gene_name: ZC3H13
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 32 percent done.
ZC4H2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.997344e-03	ci left: 9.814524e-01	ci right 9.864599e-01	k: 9841	n:10000
Cons ci ratio: 2.432937e-02	ci left: 7.130044e-01	ci right 7.306662e-01	k: 7219	n:10000
KS ci ratio: 2.150284e-02	ci left: 7.603080e-01	ci right 7.769353e-01	k: 7687	n:10000
ZC4H2   10000 perm   1 sec   (6807 perm/sec)   p_kst 7.687000e-01   p_cons 7.219000e-01   p_joint 9.841000e-01

Outputting figure to mutsig2_images.part000000000193/ZC4H2.4_714_10000_0.7687_0.7219_0.9841.png
                gene_name: ZC4H2
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 34 percent done.
ZCCHC12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.487514e-02	ci left: 1.682863e-01	ci right 1.833030e-01	k: 1757	n:10000
Cons ci ratio: 3.056883e-02	ci left: 6.122110e-01	ci right 6.313180e-01	k: 6218	n:10000
KS ci ratio: 1.093325e-01	ci left: 1.076389e-01	ci right 1.201870e-01	k: 1138	n:10000
ZCCHC12   10000 perm   2 sec   (6499 perm/sec)   p_kst 1.138000e-01   p_cons 6.218000e-01   p_joint 1.757000e-01

Joint ci ratio: 4.664121e-02	ci left: 2.548739e-01	ci right 2.670957e-01	k: 5219	n:20000
Cons ci ratio: 2.297902e-02	ci left: 5.858024e-01	ci right 5.994706e-01	k: 11853	n:20000
KS ci ratio: 7.704429e-02	ci left: 1.101675e-01	ci right 1.190449e-01	k: 2291	n:20000
ZCCHC12   20000 perm   3 sec   (5893 perm/sec)   p_kst 1.145500e-01   p_cons 5.926500e-01   p_joint 2.609500e-01

Outputting figure to mutsig2_images.part000000000193/ZCCHC12.4_1213_20000_0.11455_0.59265_0.26095.png
                gene_name: ZCCHC12
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 36 percent done.
ZCCHC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.571839e-01	ci left: 9.776646e-03	ci right 1.411465e-02	k: 118	n:10000
Cons ci ratio: 2.322591e-03	ci left: 9.952521e-01	ci right 9.976443e-01	k: 9966	n:10000
KS ci ratio: 1.238931e+00	ci left: 4.116173e-04	ci right 1.707790e-03	k: 9	n:10000
ZCCHC3   10000 perm   1 sec   (6810 perm/sec)   p_kst 9.000000e-04   p_cons 9.966000e-01   p_joint 1.180000e-02

Joint ci ratio: 3.890588e-01	ci left: 4.069996e-03	ci right 6.078049e-03	k: 100	n:20000
Cons ci ratio: 1.618809e-03	ci left: 9.957475e-01	ci right 9.974029e-01	k: 19933	n:20000
KS ci ratio: 1.086832e+00	ci left: 3.100660e-04	ci right 1.047844e-03	k: 12	n:20000
ZCCHC3   20000 perm   3 sec   (6118 perm/sec)   p_kst 6.000000e-04   p_cons 9.966500e-01   p_joint 5.000000e-03

Joint ci ratio: 3.024883e-01	ci left: 4.725427e-03	ci right 6.439129e-03	k: 166	n:30000
Cons ci ratio: 1.397680e-03	ci left: 9.954732e-01	ci right 9.968948e-01	k: 29887	n:30000
KS ci ratio: 8.990099e-01	ci left: 3.556356e-04	ci right 9.480936e-04	k: 18	n:30000
ZCCHC3   30000 perm   5 sec   (5901 perm/sec)   p_kst 6.000000e-04   p_cons 9.962333e-01   p_joint 5.533333e-03

Joint ci ratio: 2.014743e-01	ci left: 8.430095e-03	ci right 1.034215e-02	k: 374	n:40000
Cons ci ratio: 1.230276e-03	ci left: 9.954392e-01	ci right 9.966871e-01	k: 39844	n:40000
KS ci ratio: 7.541403e-01	ci left: 4.246441e-04	ci right 9.522566e-04	k: 26	n:40000
ZCCHC3   40000 perm   7 sec   (5705 perm/sec)   p_kst 6.500000e-04   p_cons 9.961000e-01   p_joint 9.350000e-03

Joint ci ratio: 3.261927e-01	ci left: 2.410984e-03	ci right 3.368181e-03	k: 143	n:50000
Cons ci ratio: 1.102515e-03	ci left: 9.954924e-01	ci right 9.966087e-01	k: 49804	n:50000
KS ci ratio: 7.154689e-01	ci left: 3.884684e-04	ci right 8.328714e-04	k: 29	n:50000
ZCCHC3   50000 perm   9 sec   (5536 perm/sec)   p_kst 5.800000e-04   p_cons 9.960800e-01   p_joint 2.860000e-03

Joint ci ratio: 1.946106e-01	ci left: 6.062863e-03	ci right 7.385528e-03	k: 402	n:60000
Cons ci ratio: 1.024680e-03	ci left: 9.953910e-01	ci right 9.964268e-01	k: 59756	n:60000
KS ci ratio: 6.531319e-01	ci left: 4.063456e-04	ci right 8.111830e-04	k: 35	n:60000
ZCCHC3   60000 perm   11 sec   (5391 perm/sec)   p_kst 5.833333e-04   p_cons 9.959333e-01   p_joint 6.700000e-03

Joint ci ratio: 1.777485e-01	ci left: 6.286488e-03	ci right 7.526345e-03	k: 482	n:70000
Cons ci ratio: 9.638303e-04	ci left: 9.952926e-01	ci right 9.962656e-01	k: 69706	n:70000
KS ci ratio: 5.541697e-01	ci left: 5.179073e-04	ci right 9.253328e-04	k: 49	n:70000
ZCCHC3   70000 perm   13 sec   (5264 perm/sec)   p_kst 7.000000e-04   p_cons 9.958000e-01   p_joint 6.885714e-03

Joint ci ratio: 2.044312e-01	ci left: 4.107298e-03	ci right 5.054182e-03	k: 365	n:80000
Cons ci ratio: 8.973548e-04	ci left: 9.953666e-01	ci right 9.962718e-01	k: 79667	n:80000
KS ci ratio: 5.332610e-01	ci left: 4.962961e-04	ci right 8.664779e-04	k: 53	n:80000
ZCCHC3   80000 perm   16 sec   (5137 perm/sec)   p_kst 6.625000e-04   p_cons 9.958375e-01   p_joint 4.562500e-03

Joint ci ratio: 1.815107e-01	ci left: 4.687511e-03	ci right 5.633704e-03	k: 463	n:90000
Cons ci ratio: 8.383720e-04	ci left: 9.954722e-01	ci right 9.963175e-01	k: 89632	n:90000
KS ci ratio: 5.434461e-01	ci left: 4.219488e-04	ci right 7.449956e-04	k: 51	n:90000
ZCCHC3   90000 perm   18 sec   (5023 perm/sec)   p_kst 5.666667e-04   p_cons 9.959111e-01   p_joint 5.144444e-03

Joint ci ratio: 1.819522e-01	ci left: 4.199572e-03	ci right 5.049554e-03	k: 461	n:100000
Cons ci ratio: 7.471658e-04	ci left: 9.959985e-01	ci right 9.967523e-01	k: 99639	n:100000
KS ci ratio: 5.145694e-01	ci left: 4.317401e-04	ci right 7.384389e-04	k: 57	n:100000
ZCCHC3   100000 perm   20 sec   (4940 perm/sec)   p_kst 5.700000e-04   p_cons 9.963900e-01   p_joint 4.610000e-03

Joint ci ratio: 1.915982e-01	ci left: 3.427682e-03	ci right 4.162498e-03	k: 416	n:110000
Cons ci ratio: 7.237978e-04	ci left: 9.958947e-01	ci right 9.966242e-01	k: 109590	n:110000
KS ci ratio: 4.860703e-01	ci left: 4.480988e-04	ci right 7.429090e-04	k: 64	n:110000
ZCCHC3   110000 perm   23 sec   (4853 perm/sec)   p_kst 5.818182e-04   p_cons 9.962727e-01   p_joint 3.781818e-03

Joint ci ratio: 1.930271e-01	ci left: 3.094397e-03	ci right 3.763289e-03	k: 410	n:120000
Cons ci ratio: 6.919264e-04	ci left: 9.959226e-01	ci right 9.966198e-01	k: 119554	n:120000
KS ci ratio: 4.618359e-01	ci left: 4.621246e-04	ci right 7.462493e-04	k: 71	n:120000
ZCCHC3   120000 perm   25 sec   (4769 perm/sec)   p_kst 5.916667e-04   p_cons 9.962833e-01   p_joint 3.416667e-03

Joint ci ratio: 2.024058e-01	ci left: 2.585762e-03	ci right 3.175221e-03	k: 373	n:130000
Cons ci ratio: 6.721487e-04	ci left: 9.958504e-01	ci right 9.965272e-01	k: 129506	n:130000
KS ci ratio: 4.437177e-01	ci left: 4.674674e-04	ci right 7.402282e-04	k: 77	n:130000
ZCCHC3   130000 perm   28 sec   (4692 perm/sec)   p_kst 5.923077e-04   p_cons 9.962000e-01   p_joint 2.869231e-03

Joint ci ratio: 2.040747e-01	ci left: 2.360360e-03	ci right 2.903423e-03	k: 367	n:140000
Cons ci ratio: 6.476527e-04	ci left: 9.958636e-01	ci right 9.965155e-01	k: 139468	n:140000
KS ci ratio: 4.225731e-01	ci left: 4.849920e-04	ci right 7.506876e-04	k: 85	n:140000
ZCCHC3   140000 perm   30 sec   (4614 perm/sec)   p_kst 6.071429e-04   p_cons 9.962000e-01   p_joint 2.621429e-03

Joint ci ratio: 2.311680e-01	ci left: 1.692250e-03	ci right 2.140687e-03	k: 286	n:150000
Cons ci ratio: 6.278494e-04	ci left: 9.958478e-01	ci right 9.964795e-01	k: 149426	n:150000
KS ci ratio: 4.130789e-01	ci left: 4.765216e-04	ci right 7.300978e-04	k: 89	n:150000
ZCCHC3   150000 perm   33 sec   (4542 perm/sec)   p_kst 5.933333e-04   p_cons 9.961733e-01   p_joint 1.906667e-03

Joint ci ratio: 1.498942e-01	ci left: 3.937131e-03	ci right 4.581037e-03	k: 680	n:160000
Cons ci ratio: 6.022490e-04	ci left: 9.959317e-01	ci right 9.965376e-01	k: 159399	n:160000
KS ci ratio: 3.958573e-01	ci left: 4.916546e-04	ci right 7.395243e-04	k: 97	n:160000
ZCCHC3   160000 perm   36 sec   (4459 perm/sec)   p_kst 6.062500e-04   p_cons 9.962437e-01   p_joint 4.250000e-03

Joint ci ratio: 1.481755e-01	ci left: 3.796122e-03	ci right 4.409215e-03	k: 696	n:170000
Cons ci ratio: 5.885504e-04	ci left: 9.958837e-01	ci right 9.964756e-01	k: 169352	n:170000
KS ci ratio: 3.880202e-01	ci left: 4.839438e-04	ci right 7.218607e-04	k: 101	n:170000
ZCCHC3   170000 perm   39 sec   (4386 perm/sec)   p_kst 5.941176e-04   p_cons 9.961882e-01   p_joint 4.094118e-03

Joint ci ratio: 1.457969e-01	ci left: 3.708292e-03	ci right 4.296748e-03	k: 719	n:180000
Cons ci ratio: 5.731471e-04	ci left: 9.958760e-01	ci right 9.964523e-01	k: 179311	n:180000
KS ci ratio: 3.736421e-01	ci left: 4.972497e-04	ci right 7.304346e-04	k: 109	n:180000
ZCCHC3   180000 perm   42 sec   (4315 perm/sec)   p_kst 6.055556e-04   p_cons 9.961722e-01   p_joint 3.994444e-03

Joint ci ratio: 1.439185e-01	ci left: 3.609481e-03	ci right 4.174243e-03	k: 738	n:190000
Cons ci ratio: 5.581170e-04	ci left: 9.958803e-01	ci right 9.964413e-01	k: 189272	n:190000
KS ci ratio: 3.607522e-01	ci left: 5.093005e-04	ci right 7.379624e-04	k: 117	n:190000
ZCCHC3   190000 perm   45 sec   (4228 perm/sec)   p_kst 6.157895e-04   p_cons 9.961684e-01   p_joint 3.884211e-03

Joint ci ratio: 1.439325e-01	ci left: 3.428984e-03	ci right 3.965559e-03	k: 738	n:200000
Cons ci ratio: 5.438544e-04	ci left: 9.958895e-01	ci right 9.964360e-01	k: 199234	n:200000
KS ci ratio: 3.592380e-01	ci left: 4.883822e-04	ci right 7.065164e-04	k: 118	n:200000
ZCCHC3   200000 perm   48 sec   (4163 perm/sec)   p_kst 5.900000e-04   p_cons 9.961700e-01   p_joint 3.690000e-03

Joint ci ratio: 1.456359e-01	ci left: 3.187650e-03	ci right 3.692877e-03	k: 721	n:210000
Cons ci ratio: 5.283111e-04	ci left: 9.959324e-01	ci right 9.964633e-01	k: 209203	n:210000
KS ci ratio: 3.577423e-01	ci left: 4.694581e-04	ci right 6.780634e-04	k: 119	n:210000
ZCCHC3   210000 perm   51 sec   (4103 perm/sec)   p_kst 5.666667e-04   p_cons 9.962048e-01   p_joint 3.433333e-03

Joint ci ratio: 1.542430e-01	ci left: 2.701449e-03	ci right 3.157259e-03	k: 643	n:220000
Cons ci ratio: 5.158547e-04	ci left: 9.959434e-01	ci right 9.964616e-01	k: 219166	n:220000
KS ci ratio: 3.477425e-01	ci left: 4.771188e-04	ci right 6.818676e-04	k: 126	n:220000
ZCCHC3   220000 perm   55 sec   (4032 perm/sec)   p_kst 5.727273e-04   p_cons 9.962091e-01   p_joint 2.922727e-03

Joint ci ratio: 1.313664e-01	ci left: 3.603108e-03	ci right 4.113869e-03	k: 886	n:230000
Cons ci ratio: 5.068446e-04	ci left: 9.959131e-01	ci right 9.964221e-01	k: 229120	n:230000
KS ci ratio: 3.348077e-01	ci left: 4.961289e-04	ci right 6.994090e-04	k: 136	n:230000
ZCCHC3   230000 perm   58 sec   (3975 perm/sec)   p_kst 5.913043e-04   p_cons 9.961739e-01   p_joint 3.852174e-03

Joint ci ratio: 1.339005e-01	ci left: 3.320007e-03	ci right 3.800438e-03	k: 853	n:240000
Cons ci ratio: 4.952773e-04	ci left: 9.959328e-01	ci right 9.964301e-01	k: 239085	n:240000
KS ci ratio: 3.254392e-01	ci left: 5.060287e-04	ci right 7.063521e-04	k: 144	n:240000
ZCCHC3   240000 perm   61 sec   (3914 perm/sec)   p_kst 6.000000e-04   p_cons 9.961875e-01   p_joint 3.554167e-03

Joint ci ratio: 1.308695e-01	ci left: 3.341911e-03	ci right 3.813713e-03	k: 893	n:250000
Cons ci ratio: 4.847175e-04	ci left: 9.959468e-01	ci right 9.964335e-01	k: 249049	n:250000
KS ci ratio: 3.117593e-01	ci left: 5.336327e-04	ci right 7.342387e-04	k: 157	n:250000
ZCCHC3   250000 perm   65 sec   (3862 perm/sec)   p_kst 6.280000e-04   p_cons 9.961960e-01   p_joint 3.572000e-03

Joint ci ratio: 1.293627e-01	ci left: 3.291510e-03	ci right 3.750436e-03	k: 914	n:260000
Cons ci ratio: 4.752855e-04	ci left: 9.959520e-01	ci right 9.964291e-01	k: 259011	n:260000
KS ci ratio: 3.050742e-01	ci left: 5.379484e-04	ci right 7.349985e-04	k: 164	n:260000
ZCCHC3   260000 perm   68 sec   (3808 perm/sec)   p_kst 6.307692e-04   p_cons 9.961962e-01   p_joint 3.515385e-03

Joint ci ratio: 1.309604e-01	ci left: 3.090753e-03	ci right 3.527423e-03	k: 892	n:270000
Cons ci ratio: 4.666112e-04	ci left: 9.959530e-01	ci right 9.964214e-01	k: 268972	n:270000
KS ci ratio: 2.996744e-01	ci left: 5.385610e-04	ci right 7.316792e-04	k: 170	n:270000
ZCCHC3   270000 perm   72 sec   (3761 perm/sec)   p_kst 6.296296e-04   p_cons 9.961926e-01   p_joint 3.303704e-03

Joint ci ratio: 1.330006e-01	ci left: 2.887104e-03	ci right 3.301858e-03	k: 865	n:280000
Cons ci ratio: 4.571004e-04	ci left: 9.959761e-01	ci right 9.964349e-01	k: 278939	n:280000
KS ci ratio: 2.945516e-01	ci left: 5.391583e-04	ci right 7.285688e-04	k: 176	n:280000
ZCCHC3   280000 perm   75 sec   (3713 perm/sec)   p_kst 6.285714e-04   p_cons 9.962107e-01   p_joint 3.089286e-03

Joint ci ratio: 1.303184e-01	ci left: 2.907600e-03	ci right 3.316223e-03	k: 901	n:290000
Cons ci ratio: 4.469050e-04	ci left: 9.960190e-01	ci right 9.964675e-01	k: 288912	n:290000
KS ci ratio: 2.888940e-01	ci left: 5.429388e-04	ci right 7.293447e-04	k: 183	n:290000
ZCCHC3   290000 perm   79 sec   (3668 perm/sec)   p_kst 6.310345e-04   p_cons 9.962483e-01   p_joint 3.106897e-03

Joint ci ratio: 1.287596e-01	ci left: 2.881634e-03	ci right 3.281394e-03	k: 923	n:300000
Cons ci ratio: 4.383055e-04	ci left: 9.960419e-01	ci right 9.964818e-01	k: 298880	n:300000
KS ci ratio: 2.835505e-01	ci left: 5.464995e-04	ci right 7.300367e-04	k: 190	n:300000
ZCCHC3   300000 perm   83 sec   (3621 perm/sec)   p_kst 6.333333e-04   p_cons 9.962667e-01   p_joint 3.076667e-03

Joint ci ratio: 1.273905e-01	ci left: 2.851124e-03	ci right 3.242128e-03	k: 943	n:310000
Cons ci ratio: 4.294249e-04	ci left: 9.960766e-01	ci right 9.965076e-01	k: 308852	n:310000
KS ci ratio: 2.757199e-01	ci left: 5.618674e-04	ci right 7.444515e-04	k: 201	n:310000
ZCCHC3   310000 perm   87 sec   (3571 perm/sec)   p_kst 6.483871e-04   p_cons 9.962968e-01   p_joint 3.041935e-03

Joint ci ratio: 1.254780e-01	ci left: 2.849785e-03	ci right 3.234302e-03	k: 972	n:320000
Cons ci ratio: 4.224716e-04	ci left: 9.960835e-01	ci right 9.965074e-01	k: 318816	n:320000
KS ci ratio: 2.691371e-01	ci left: 5.734254e-04	ci right 7.545657e-04	k: 211	n:320000
ZCCHC3   320000 perm   91 sec   (3525 perm/sec)   p_kst 6.593750e-04   p_cons 9.963000e-01   p_joint 3.037500e-03

Joint ci ratio: 1.342814e-01	ci left: 2.402759e-03	ci right 2.751522e-03	k: 849	n:330000
Cons ci ratio: 4.160160e-04	ci left: 9.960869e-01	ci right 9.965043e-01	k: 328779	n:330000
KS ci ratio: 2.641978e-01	ci left: 5.786711e-04	ci right 7.575590e-04	k: 219	n:330000
ZCCHC3   330000 perm   95 sec   (3484 perm/sec)   p_kst 6.636364e-04   p_cons 9.963000e-01   p_joint 2.572727e-03

Joint ci ratio: 1.321980e-01	ci left: 2.408855e-03	ci right 2.752651e-03	k: 876	n:340000
Cons ci ratio: 4.096842e-04	ci left: 9.960932e-01	ci right 9.965042e-01	k: 338743	n:340000
KS ci ratio: 2.595209e-01	ci left: 5.836367e-04	ci right 7.603479e-04	k: 227	n:340000
ZCCHC3   340000 perm   99 sec   (3443 perm/sec)   p_kst 6.676471e-04   p_cons 9.963029e-01   p_joint 2.576471e-03

Joint ci ratio: 1.329650e-01	ci left: 2.312399e-03	ci right 2.644495e-03	k: 866	n:350000
Cons ci ratio: 4.045709e-04	ci left: 9.960815e-01	ci right 9.964873e-01	k: 348701	n:350000
KS ci ratio: 2.556264e-01	ci left: 5.856703e-04	ci right 7.599119e-04	k: 234	n:350000
ZCCHC3   350000 perm   103 sec   (3394 perm/sec)   p_kst 6.685714e-04   p_cons 9.962886e-01   p_joint 2.474286e-03

Joint ci ratio: 1.313841e-01	ci left: 2.304570e-03	ci right 2.631299e-03	k: 887	n:360000
Cons ci ratio: 3.987412e-04	ci left: 9.960877e-01	ci right 9.964876e-01	k: 358665	n:360000
KS ci ratio: 2.519021e-01	ci left: 5.876097e-04	ci right 7.594817e-04	k: 241	n:360000
ZCCHC3   360000 perm   107 sec   (3356 perm/sec)   p_kst 6.694444e-04   p_cons 9.962917e-01   p_joint 2.463889e-03

Joint ci ratio: 1.307992e-01	ci left: 2.263194e-03	ci right 2.582517e-03	k: 895	n:370000
Cons ci ratio: 3.947350e-04	ci left: 9.960630e-01	ci right 9.964589e-01	k: 368618	n:370000
KS ci ratio: 2.503563e-01	ci left: 5.793258e-04	ci right 7.475730e-04	k: 244	n:370000
ZCCHC3   370000 perm   111 sec   (3321 perm/sec)   p_kst 6.594595e-04   p_cons 9.962649e-01   p_joint 2.418919e-03

Joint ci ratio: 1.339101e-01	ci left: 2.099301e-03	ci right 2.403105e-03	k: 854	n:380000
Cons ci ratio: 3.884898e-04	ci left: 9.960856e-01	ci right 9.964752e-01	k: 378588	n:380000
KS ci ratio: 2.478407e-01	ci left: 5.764169e-04	ci right 7.418778e-04	k: 249	n:380000
ZCCHC3   380000 perm   116 sec   (3284 perm/sec)   p_kst 6.552632e-04   p_cons 9.962842e-01   p_joint 2.247368e-03

Joint ci ratio: 1.197294e-01	ci left: 2.576872e-03	ci right 2.907507e-03	k: 1068	n:390000
Cons ci ratio: 4.129909e-04	ci left: 9.954818e-01	ci right 9.958954e-01	k: 388320	n:390000
KS ci ratio: 2.444420e-01	ci left: 5.784787e-04	ci right 7.419087e-04	k: 256	n:390000
ZCCHC3   390000 perm   120 sec   (3249 perm/sec)   p_kst 6.564103e-04   p_cons 9.956923e-01   p_joint 2.738462e-03

Joint ci ratio: 1.238061e-01	ci left: 2.345186e-03	ci right 2.657090e-03	k: 999	n:400000
Cons ci ratio: 4.084958e-04	ci left: 9.954693e-01	ci right 9.958785e-01	k: 398271	n:400000
KS ci ratio: 2.430288e-01	ci left: 5.710585e-04	ci right 7.313186e-04	k: 259	n:400000
ZCCHC3   400000 perm   124 sec   (3213 perm/sec)   p_kst 6.475000e-04   p_cons 9.956775e-01   p_joint 2.497500e-03

Joint ci ratio: 1.381120e-01	ci left: 1.825517e-03	ci right 2.098671e-03	k: 803	n:410000
Cons ci ratio: 4.029976e-04	ci left: 9.954825e-01	ci right 9.958861e-01	k: 408232	n:410000
KS ci ratio: 2.421007e-01	ci left: 5.617114e-04	ci right 7.186560e-04	k: 261	n:410000
ZCCHC3   410000 perm   129 sec   (3179 perm/sec)   p_kst 6.365854e-04   p_cons 9.956878e-01   p_joint 1.958537e-03

Joint ci ratio: 1.200794e-01	ci left: 2.378938e-03	ci right 2.685132e-03	k: 1062	n:420000
Cons ci ratio: 3.983756e-04	ci left: 9.954804e-01	ci right 9.958794e-01	k: 418187	n:420000
KS ci ratio: 2.380459e-01	ci left: 5.684773e-04	ci right 7.242599e-04	k: 270	n:420000
ZCCHC3   420000 perm   134 sec   (3145 perm/sec)   p_kst 6.428571e-04   p_cons 9.956833e-01   p_joint 2.528571e-03

Joint ci ratio: 1.186919e-01	ci left: 2.380018e-03	ci right 2.682562e-03	k: 1087	n:430000
Cons ci ratio: 3.945467e-04	ci left: 9.954642e-01	ci right 9.958593e-01	k: 428136	n:430000
KS ci ratio: 2.363090e-01	ci left: 5.640063e-04	ci right 7.172710e-04	k: 274	n:430000
ZCCHC3   430000 perm   138 sec   (3111 perm/sec)   p_kst 6.372093e-04   p_cons 9.956651e-01   p_joint 2.527907e-03

Joint ci ratio: 1.178299e-01	ci left: 2.361213e-03	ci right 2.659035e-03	k: 1103	n:440000
Cons ci ratio: 3.904096e-04	ci left: 9.954581e-01	ci right 9.958490e-01	k: 438089	n:440000
KS ci ratio: 2.346096e-01	ci left: 5.597425e-04	ci right 7.105958e-04	k: 278	n:440000
ZCCHC3   440000 perm   143 sec   (3078 perm/sec)   p_kst 6.318182e-04   p_cons 9.956568e-01   p_joint 2.506818e-03

Joint ci ratio: 1.178867e-01	ci left: 2.306581e-03	ci right 2.597662e-03	k: 1102	n:450000
Cons ci ratio: 3.860024e-04	ci left: 9.954613e-01	ci right 9.958478e-01	k: 448046	n:450000
KS ci ratio: 2.309140e-01	ci left: 5.661378e-04	ci right 7.159686e-04	k: 287	n:450000
ZCCHC3   450000 perm   148 sec   (3048 perm/sec)   p_kst 6.377778e-04   p_cons 9.956578e-01   p_joint 2.448889e-03

Joint ci ratio: 1.169373e-01	ci left: 2.294418e-03	ci right 2.581472e-03	k: 1120	n:460000
Cons ci ratio: 3.816451e-04	ci left: 9.954667e-01	ci right 9.958488e-01	k: 458004	n:460000
KS ci ratio: 2.266255e-01	ci left: 5.763736e-04	ci right 7.256846e-04	k: 298	n:460000
ZCCHC3   460000 perm   152 sec   (3017 perm/sec)   p_kst 6.478261e-04   p_cons 9.956609e-01   p_joint 2.434783e-03

Joint ci ratio: 1.161126e-01	ci left: 2.278650e-03	ci right 2.561582e-03	k: 1136	n:470000
Cons ci ratio: 3.780820e-04	ci left: 9.954566e-01	ci right 9.958351e-01	k: 467955	n:470000
KS ci ratio: 2.240183e-01	ci left: 5.781634e-04	ci right 7.259773e-04	k: 305	n:470000
ZCCHC3   470000 perm   157 sec   (2986 perm/sec)   p_kst 6.489362e-04   p_cons 9.956489e-01   p_joint 2.417021e-03

Joint ci ratio: 1.168388e-01	ci left: 2.202856e-03	ci right 2.478206e-03	k: 1122	n:480000
Cons ci ratio: 3.738953e-04	ci left: 9.954640e-01	ci right 9.958383e-01	k: 477914	n:480000
KS ci ratio: 2.214990e-01	ci left: 5.798881e-04	ci right 7.262484e-04	k: 312	n:480000
ZCCHC3   480000 perm   162 sec   (2956 perm/sec)   p_kst 6.500000e-04   p_cons 9.956542e-01   p_joint 2.337500e-03

Joint ci ratio: 1.168416e-01	ci left: 2.157897e-03	ci right 2.427634e-03	k: 1122	n:490000
Cons ci ratio: 3.707159e-04	ci left: 9.954503e-01	ci right 9.958214e-01	k: 487863	n:490000
KS ci ratio: 2.187212e-01	ci left: 5.834802e-04	ci right 7.286520e-04	k: 320	n:490000
ZCCHC3   490000 perm   167 sec   (2927 perm/sec)   p_kst 6.530612e-04   p_cons 9.956388e-01   p_joint 2.289796e-03

Joint ci ratio: 1.167401e-01	ci left: 2.118620e-03	ci right 2.383201e-03	k: 1124	n:500000
Cons ci ratio: 3.659213e-04	ci left: 9.954780e-01	ci right 9.958442e-01	k: 497832	n:500000
KS ci ratio: 2.160453e-01	ci left: 5.869396e-04	ci right 7.309486e-04	k: 328	n:500000
ZCCHC3   500000 perm   173 sec   (2897 perm/sec)   p_kst 6.560000e-04   p_cons 9.956640e-01   p_joint 2.248000e-03

Joint ci ratio: 1.151633e-01	ci left: 2.136101e-03	ci right 2.399017e-03	k: 1155	n:510000
Cons ci ratio: 3.618734e-04	ci left: 9.954906e-01	ci right 9.958528e-01	k: 507794	n:510000
KS ci ratio: 2.125208e-01	ci left: 5.958425e-04	ci right 7.393402e-04	k: 339	n:510000
ZCCHC3   510000 perm   178 sec   (2869 perm/sec)   p_kst 6.647059e-04   p_cons 9.956745e-01   p_joint 2.264706e-03

Joint ci ratio: 1.216670e-01	ci left: 1.871067e-03	ci right 2.115304e-03	k: 1035	n:520000
Cons ci ratio: 3.579549e-04	ci left: 9.955027e-01	ci right 9.958610e-01	k: 517756	n:520000
KS ci ratio: 2.100635e-01	ci left: 5.989547e-04	ci right 7.413195e-04	k: 347	n:520000
ZCCHC3   520000 perm   183 sec   (2839 perm/sec)   p_kst 6.673077e-04   p_cons 9.956846e-01   p_joint 1.990385e-03

Joint ci ratio: 1.233508e-01	ci left: 1.784548e-03	ci right 2.020950e-03	k: 1007	n:530000
Cons ci ratio: 3.541592e-04	ci left: 9.955144e-01	ci right 9.958688e-01	k: 527718	n:530000
KS ci ratio: 2.068194e-01	ci left: 6.073254e-04	ci right 7.491684e-04	k: 358	n:530000
ZCCHC3   530000 perm   189 sec   (2809 perm/sec)   p_kst 6.754717e-04   p_cons 9.956943e-01   p_joint 1.900000e-03

Joint ci ratio: 1.049314e-01	ci left: 2.442481e-03	ci right 2.714752e-03	k: 1391	n:540000
Cons ci ratio: 3.504800e-04	ci left: 9.955256e-01	ci right 9.958764e-01	k: 537680	n:540000
KS ci ratio: 2.045526e-01	ci left: 6.101305e-04	ci right 7.508716e-04	k: 366	n:540000
ZCCHC3   540000 perm   194 sec   (2780 perm/sec)   p_kst 6.777778e-04   p_cons 9.957037e-01   p_joint 2.575926e-03

Joint ci ratio: 1.107482e-01	ci left: 2.146831e-03	ci right 2.400276e-03	k: 1249	n:550000
Cons ci ratio: 3.470592e-04	ci left: 9.955328e-01	ci right 9.958801e-01	k: 547640	n:550000
KS ci ratio: 2.023587e-01	ci left: 6.128418e-04	ci right 7.525048e-04	k: 374	n:550000
ZCCHC3   550000 perm   200 sec   (2753 perm/sec)   p_kst 6.800000e-04   p_cons 9.957091e-01   p_joint 2.270909e-03

Joint ci ratio: 1.100033e-01	ci left: 2.138013e-03	ci right 2.388610e-03	k: 1266	n:560000
Cons ci ratio: 3.442390e-04	ci left: 9.955270e-01	ci right 9.958715e-01	k: 557593	n:560000
KS ci ratio: 2.002340e-01	ci left: 6.154640e-04	ci right 7.540719e-04	k: 382	n:560000
ZCCHC3   560000 perm   205 sec   (2726 perm/sec)   p_kst 6.821429e-04   p_cons 9.957018e-01   p_joint 2.260714e-03

Joint ci ratio: 1.103991e-01	ci left: 2.085146e-03	ci right 2.330483e-03	k: 1257	n:570000
Cons ci ratio: 3.408563e-04	ci left: 9.955374e-01	ci right 9.958785e-01	k: 567555	n:570000
KS ci ratio: 1.986839e-01	ci left: 6.146669e-04	ci right 7.518939e-04	k: 388	n:570000
ZCCHC3   570000 perm   211 sec   (2699 perm/sec)   p_kst 6.807018e-04   p_cons 9.957105e-01   p_joint 2.205263e-03

Joint ci ratio: 9.616193e-02	ci left: 2.719480e-03	ci right 2.995868e-03	k: 1656	n:580000
Cons ci ratio: 3.384561e-04	ci left: 9.955247e-01	ci right 9.958634e-01	k: 577504	n:580000
KS ci ratio: 1.969200e-01	ci left: 6.155405e-04	ci right 7.515961e-04	k: 395	n:580000
ZCCHC3   580000 perm   217 sec   (2674 perm/sec)   p_kst 6.810345e-04   p_cons 9.956966e-01   p_joint 2.855172e-03

Joint ci ratio: 9.802064e-02	ci left: 2.570844e-03	ci right 2.837466e-03	k: 1594	n:590000
Cons ci ratio: 3.350410e-04	ci left: 9.955401e-01	ci right 9.958753e-01	k: 587469	n:590000
KS ci ratio: 1.956888e-01	ci left: 6.131656e-04	ci right 7.477479e-04	k: 400	n:590000
ZCCHC3   590000 perm   223 sec   (2648 perm/sec)   p_kst 6.779661e-04   p_cons 9.957102e-01   p_joint 2.701695e-03

Joint ci ratio: 9.918303e-02	ci left: 2.467844e-03	ci right 2.726995e-03	k: 1557	n:600000
Cons ci ratio: 3.312695e-04	ci left: 9.955669e-01	ci right 9.958983e-01	k: 597441	n:600000
KS ci ratio: 1.928240e-01	ci left: 6.219738e-04	ci right 7.562565e-04	k: 412	n:600000
ZCCHC3   600000 perm   229 sec   (2622 perm/sec)   p_kst 6.866667e-04   p_cons 9.957350e-01   p_joint 2.595000e-03

Joint ci ratio: 1.032869e-01	ci left: 2.234034e-03	ci right 2.478928e-03	k: 1436	n:610000
Cons ci ratio: 3.278027e-04	ci left: 9.955877e-01	ci right 9.959157e-01	k: 607410	n:610000
KS ci ratio: 1.905307e-01	ci left: 6.273845e-04	ci right 7.610378e-04	k: 422	n:610000
ZCCHC3   610000 perm   235 sec   (2600 perm/sec)   p_kst 6.918033e-04   p_cons 9.957541e-01   p_joint 2.354098e-03

Joint ci ratio: 1.024350e-01	ci left: 2.235715e-03	ci right 2.478650e-03	k: 1460	n:620000
Cons ci ratio: 3.248087e-04	ci left: 9.955981e-01	ci right 9.959231e-01	k: 617373	n:620000
KS ci ratio: 1.894148e-01	ci left: 6.249463e-04	ci right 7.572107e-04	k: 427	n:620000
ZCCHC3   620000 perm   241 sec   (2576 perm/sec)   p_kst 6.887097e-04   p_cons 9.957629e-01   p_joint 2.354839e-03

Joint ci ratio: 1.016038e-01	ci left: 2.237350e-03	ci right 2.478373e-03	k: 1484	n:630000
Cons ci ratio: 3.225605e-04	ci left: 9.955903e-01	ci right 9.959130e-01	k: 627325	n:630000
KS ci ratio: 1.885363e-01	ci left: 6.210752e-04	ci right 7.518409e-04	k: 431	n:630000
ZCCHC3   630000 perm   247 sec   (2554 perm/sec)   p_kst 6.841270e-04   p_cons 9.957540e-01   p_joint 2.355556e-03

Joint ci ratio: 8.362177e-02	ci left: 3.278746e-03	ci right 3.566402e-03	k: 2189	n:640000
Cons ci ratio: 3.198842e-04	ci left: 9.955955e-01	ci right 9.959156e-01	k: 637285	n:640000
KS ci ratio: 1.863908e-01	ci left: 6.262628e-04	ci right 7.564506e-04	k: 441	n:640000
ZCCHC3   640000 perm   253 sec   (2531 perm/sec)   p_kst 6.890625e-04   p_cons 9.957578e-01   p_joint 3.420313e-03

Joint ci ratio: 8.854615e-02	ci left: 2.873010e-03	ci right 3.140681e-03	k: 1953	n:650000
Cons ci ratio: 3.172731e-04	ci left: 9.956006e-01	ci right 9.959180e-01	k: 647245	n:650000
KS ci ratio: 1.851386e-01	ci left: 6.254295e-04	ci right 7.544725e-04	k: 447	n:650000
ZCCHC3   650000 perm   259 sec   (2508 perm/sec)   p_kst 6.876923e-04   p_cons 9.957615e-01   p_joint 3.004615e-03

Joint ci ratio: 8.794087e-02	ci left: 2.869486e-03	ci right 3.134906e-03	k: 1980	n:660000
Cons ci ratio: 3.144986e-04	ci left: 9.956117e-01	ci right 9.959263e-01	k: 657209	n:660000
KS ci ratio: 1.837089e-01	ci left: 6.260698e-04	ci right 7.541362e-04	k: 454	n:660000
ZCCHC3   660000 perm   266 sec   (2486 perm/sec)   p_kst 6.878788e-04   p_cons 9.957712e-01   p_joint 3.000000e-03

Joint ci ratio: 8.713049e-02	ci left: 2.880673e-03	ci right 3.144549e-03	k: 2017	n:670000
Cons ci ratio: 3.120707e-04	ci left: 9.956149e-01	ci right 9.959271e-01	k: 667168	n:670000
KS ci ratio: 1.821148e-01	ci left: 6.281191e-04	ci right 7.553668e-04	k: 462	n:670000
ZCCHC3   670000 perm   272 sec   (2464 perm/sec)   p_kst 6.895522e-04   p_cons 9.957731e-01   p_joint 3.010448e-03

Joint ci ratio: 8.636318e-02	ci left: 2.890104e-03	ci right 3.152394e-03	k: 2053	n:680000
Cons ci ratio: 3.099686e-04	ci left: 9.956105e-01	ci right 9.959206e-01	k: 677122	n:680000
KS ci ratio: 1.801790e-01	ci left: 6.329213e-04	ci right 7.596303e-04	k: 472	n:680000
ZCCHC3   680000 perm   278 sec   (2442 perm/sec)   p_kst 6.941176e-04   p_cons 9.957676e-01   p_joint 3.019118e-03

Joint ci ratio: 9.261053e-02	ci left: 2.469885e-03	ci right 2.711133e-03	k: 1786	n:690000
Cons ci ratio: 3.076435e-04	ci left: 9.956136e-01	ci right 9.959213e-01	k: 687081	n:690000
KS ci ratio: 1.783036e-01	ci left: 6.375912e-04	ci right 7.637632e-04	k: 482	n:690000
ZCCHC3   690000 perm   285 sec   (2421 perm/sec)   p_kst 6.985507e-04   p_cons 9.957696e-01   p_joint 2.588406e-03

Joint ci ratio: 9.484659e-02	ci left: 2.318800e-03	ci right 2.551062e-03	k: 1703	n:700000
Cons ci ratio: 3.058873e-04	ci left: 9.956021e-01	ci right 9.959081e-01	k: 697030	n:700000
KS ci ratio: 1.773881e-01	ci left: 6.353076e-04	ci right 7.603129e-04	k: 487	n:700000
ZCCHC3   700000 perm   292 sec   (2400 perm/sec)   p_kst 6.957143e-04   p_cons 9.957571e-01   p_joint 2.432857e-03

Joint ci ratio: 9.437747e-02	ci left: 2.309518e-03	ci right 2.539642e-03	k: 1720	n:710000
Cons ci ratio: 3.039561e-04	ci left: 9.955967e-01	ci right 9.959007e-01	k: 706983	n:710000
KS ci ratio: 1.768458e-01	ci left: 6.303974e-04	ci right 7.540170e-04	k: 490	n:710000
ZCCHC3   710000 perm   298 sec   (2380 perm/sec)   p_kst 6.901408e-04   p_cons 9.957507e-01   p_joint 2.422535e-03

Joint ci ratio: 9.388817e-02	ci left: 2.301852e-03	ci right 2.529959e-03	k: 1738	n:720000
Cons ci ratio: 3.021098e-04	ci left: 9.955900e-01	ci right 9.958921e-01	k: 716935	n:720000
KS ci ratio: 1.752467e-01	ci left: 6.335912e-04	ci right 7.565946e-04	k: 499	n:720000
ZCCHC3   720000 perm   305 sec   (2359 perm/sec)   p_kst 6.930556e-04   p_cons 9.957431e-01   p_joint 2.413889e-03

Joint ci ratio: 8.511391e-02	ci left: 2.773914e-03	ci right 3.021837e-03	k: 2114	n:730000
Cons ci ratio: 3.001021e-04	ci left: 9.955890e-01	ci right 9.958892e-01	k: 726891	n:730000
KS ci ratio: 1.738612e-01	ci left: 6.353921e-04	ci right 7.576675e-04	k: 507	n:730000
ZCCHC3   730000 perm   312 sec   (2339 perm/sec)   p_kst 6.945205e-04   p_cons 9.957411e-01   p_joint 2.895890e-03

Joint ci ratio: 8.521666e-02	ci left: 2.729814e-03	ci right 2.974104e-03	k: 2109	n:740000
Cons ci ratio: 2.979439e-04	ci left: 9.955936e-01	ci right 9.958916e-01	k: 736851	n:740000
KS ci ratio: 1.728436e-01	ci left: 6.345620e-04	ci right 7.558883e-04	k: 513	n:740000
ZCCHC3   740000 perm   319 sec   (2320 perm/sec)   p_kst 6.932432e-04   p_cons 9.957446e-01   p_joint 2.850000e-03

Joint ci ratio: 8.616532e-02	ci left: 2.633391e-03	ci right 2.871808e-03	k: 2063	n:750000
Cons ci ratio: 2.962502e-04	ci left: 9.955859e-01	ci right 9.958822e-01	k: 746802	n:750000
KS ci ratio: 1.720092e-01	ci left: 6.324801e-04	ci right 7.527640e-04	k: 518	n:750000
ZCCHC3   750000 perm   326 sec   (2302 perm/sec)   p_kst 6.906667e-04   p_cons 9.957360e-01   p_joint 2.750667e-03

Joint ci ratio: 8.571006e-02	ci left: 2.627066e-03	ci right 2.863591e-03	k: 2085	n:760000
Cons ci ratio: 2.944473e-04	ci left: 9.955824e-01	ci right 9.958769e-01	k: 756756	n:760000
KS ci ratio: 1.708609e-01	ci left: 6.329733e-04	ci right 7.524645e-04	k: 525	n:760000
ZCCHC3   760000 perm   333 sec   (2283 perm/sec)   p_kst 6.907895e-04   p_cons 9.957316e-01   p_joint 2.743421e-03

Joint ci ratio: 7.116798e-02	ci left: 3.784966e-03	ci right 4.065539e-03	k: 3021	n:770000
Cons ci ratio: 2.927659e-04	ci left: 9.955764e-01	ci right 9.958692e-01	k: 766708	n:770000
KS ci ratio: 1.692592e-01	ci left: 6.371872e-04	ci right 7.562314e-04	k: 535	n:770000
ZCCHC3   770000 perm   340 sec   (2266 perm/sec)   p_kst 6.948052e-04   p_cons 9.957247e-01   p_joint 3.923377e-03

Joint ci ratio: 7.147912e-02	ci left: 3.703697e-03	ci right 3.979496e-03	k: 2995	n:780000
Cons ci ratio: 2.907182e-04	ci left: 9.955823e-01	ci right 9.958730e-01	k: 776669	n:780000
KS ci ratio: 1.686314e-01	ci left: 6.339295e-04	ci right 7.518811e-04	k: 539	n:780000
ZCCHC3   780000 perm   347 sec   (2247 perm/sec)   p_kst 6.910256e-04   p_cons 9.957295e-01   p_joint 3.839744e-03

Joint ci ratio: 7.780885e-02	ci left: 3.077892e-03	ci right 3.328305e-03	k: 2529	n:790000
Cons ci ratio: 2.890563e-04	ci left: 9.955777e-01	ci right 9.958667e-01	k: 786622	n:790000
KS ci ratio: 1.677024e-01	ci left: 6.331803e-04	ci right 7.502779e-04	k: 545	n:790000
ZCCHC3   790000 perm   354 sec   (2229 perm/sec)   p_kst 6.898734e-04   p_cons 9.957241e-01   p_joint 3.201266e-03

Joint ci ratio: 7.726092e-02	ci left: 3.083546e-03	ci right 3.332573e-03	k: 2565	n:800000
Cons ci ratio: 2.871693e-04	ci left: 9.955809e-01	ci right 9.958680e-01	k: 796581	n:800000
KS ci ratio: 1.666376e-01	ci left: 6.336495e-04	ci right 7.500152e-04	k: 552	n:800000
ZCCHC3   800000 perm   362 sec   (2211 perm/sec)   p_kst 6.900000e-04   p_cons 9.957263e-01   p_joint 3.206250e-03

Joint ci ratio: 7.862666e-02	ci left: 2.938944e-03	ci right 3.180681e-03	k: 2477	n:810000
Cons ci ratio: 2.856497e-04	ci left: 9.955739e-01	ci right 9.958596e-01	k: 806532	n:810000
KS ci ratio: 1.651508e-01	ci left: 6.376599e-04	ci right 7.536133e-04	k: 562	n:810000
ZCCHC3   810000 perm   369 sec   (2195 perm/sec)   p_kst 6.938272e-04   p_cons 9.957185e-01   p_joint 3.058025e-03

Joint ci ratio: 7.826465e-02	ci left: 2.930601e-03	ci right 3.170491e-03	k: 2500	n:820000
Cons ci ratio: 2.841126e-04	ci left: 9.955684e-01	ci right 9.958525e-01	k: 816484	n:820000
KS ci ratio: 1.648587e-01	ci left: 6.322217e-04	ci right 7.469628e-04	k: 564	n:820000
ZCCHC3   820000 perm   377 sec   (2178 perm/sec)   p_kst 6.878049e-04   p_cons 9.957122e-01   p_joint 3.048780e-03

Joint ci ratio: 7.792308e-02	ci left: 2.921281e-03	ci right 3.159317e-03	k: 2522	n:830000
Cons ci ratio: 2.829176e-04	ci left: 9.955532e-01	ci right 9.958361e-01	k: 826428	n:830000
KS ci ratio: 1.637037e-01	ci left: 6.338469e-04	ci right 7.479977e-04	k: 572	n:830000
ZCCHC3   830000 perm   384 sec   (2161 perm/sec)   p_kst 6.891566e-04   p_cons 9.956964e-01   p_joint 3.038554e-03

Joint ci ratio: 7.741830e-02	ci left: 2.925027e-03	ci right 3.161754e-03	k: 2555	n:840000
Cons ci ratio: 2.809922e-04	ci left: 9.955614e-01	ci right 9.958423e-01	k: 836391	n:840000
KS ci ratio: 1.622934e-01	ci left: 6.377204e-04	ci right 7.514827e-04	k: 582	n:840000
ZCCHC3   840000 perm   392 sec   (2144 perm/sec)   p_kst 6.928571e-04   p_cons 9.957036e-01   p_joint 3.041667e-03

Joint ci ratio: 7.680427e-02	ci left: 2.937920e-03	ci right 3.173722e-03	k: 2596	n:850000
Cons ci ratio: 2.791433e-04	ci left: 9.955682e-01	ci right 9.958473e-01	k: 846353	n:850000
KS ci ratio: 1.613277e-01	ci left: 6.381196e-04	ci right 7.512102e-04	k: 589	n:850000
ZCCHC3   850000 perm   400 sec   (2127 perm/sec)   p_kst 6.929412e-04   p_cons 9.957094e-01   p_joint 3.054118e-03

Joint ci ratio: 7.637907e-02	ci left: 2.936834e-03	ci right 3.171185e-03	k: 2625	n:860000
Cons ci ratio: 2.775943e-04	ci left: 9.955665e-01	ci right 9.958441e-01	k: 856308	n:860000
KS ci ratio: 1.605137e-01	ci left: 6.373954e-04	ci right 7.497327e-04	k: 595	n:860000
ZCCHC3   860000 perm   407 sec   (2111 perm/sec)   p_kst 6.918605e-04   p_cons 9.957070e-01   p_joint 3.052326e-03

Joint ci ratio: 7.591785e-02	ci left: 2.939158e-03	ci right 3.172216e-03	k: 2657	n:870000
Cons ci ratio: 2.756995e-04	ci left: 9.955766e-01	ci right 9.958523e-01	k: 866273	n:870000
KS ci ratio: 1.591836e-01	ci left: 6.411036e-04	ci right 7.530686e-04	k: 605	n:870000
ZCCHC3   870000 perm   415 sec   (2096 perm/sec)   p_kst 6.954023e-04   p_cons 9.957161e-01   p_joint 3.054023e-03

Joint ci ratio: 7.547895e-02	ci left: 2.940319e-03	ci right 3.172062e-03	k: 2688	n:880000
Cons ci ratio: 2.739880e-04	ci left: 9.955819e-01	ci right 9.958558e-01	k: 876234	n:880000
KS ci ratio: 1.585311e-01	ci left: 6.392742e-04	ci right 7.504186e-04	k: 610	n:880000
ZCCHC3   880000 perm   423 sec   (2079 perm/sec)   p_kst 6.931818e-04   p_cons 9.957205e-01   p_joint 3.054545e-03

Joint ci ratio: 7.500610e-02	ci left: 2.944766e-03	ci right 3.175341e-03	k: 2722	n:890000
Cons ci ratio: 2.722717e-04	ci left: 9.955881e-01	ci right 9.958603e-01	k: 886196	n:890000
KS ci ratio: 1.576307e-01	ci left: 6.396454e-04	ci right 7.501630e-04	k: 617	n:890000
ZCCHC3   890000 perm   431 sec   (2063 perm/sec)   p_kst 6.932584e-04   p_cons 9.957258e-01   p_joint 3.058427e-03

Joint ci ratio: 7.456917e-02	ci left: 2.946937e-03	ci right 3.176280e-03	k: 2754	n:900000
Cons ci ratio: 2.706576e-04	ci left: 9.955920e-01	ci right 9.958626e-01	k: 896156	n:900000
KS ci ratio: 1.567455e-01	ci left: 6.400101e-04	ci right 7.499113e-04	k: 624	n:900000
ZCCHC3   900000 perm   439 sec   (2049 perm/sec)   p_kst 6.933333e-04   p_cons 9.957289e-01   p_joint 3.060000e-03

Joint ci ratio: 6.717114e-02	ci left: 3.603299e-03	ci right 3.854821e-03	k: 3392	n:910000
Cons ci ratio: 2.688630e-04	ci left: 9.956025e-01	ci right 9.958713e-01	k: 906122	n:910000
KS ci ratio: 1.452267e-01	ci left: 7.418966e-04	ci right 8.591207e-04	k: 727	n:910000
ZCCHC3   910000 perm   447 sec   (2035 perm/sec)   p_kst 7.989011e-04   p_cons 9.957385e-01   p_joint 3.727473e-03

Joint ci ratio: 6.688622e-02	ci left: 3.595126e-03	ci right 3.844971e-03	k: 3421	n:920000
Cons ci ratio: 2.674790e-04	ci left: 9.956006e-01	ci right 9.958680e-01	k: 916077	n:920000
KS ci ratio: 1.444352e-01	ci left: 7.422131e-04	ci right 8.587930e-04	k: 735	n:920000
ZCCHC3   920000 perm   455 sec   (2021 perm/sec)   p_kst 7.989130e-04   p_cons 9.957359e-01   p_joint 3.718478e-03

Joint ci ratio: 6.806550e-02	ci left: 3.432775e-03	ci right 3.675710e-03	k: 3304	n:930000
Cons ci ratio: 2.657118e-04	ci left: 9.956119e-01	ci right 9.958775e-01	k: 926044	n:930000
KS ci ratio: 1.439473e-01	ci left: 7.394146e-04	ci right 8.551289e-04	k: 740	n:930000
ZCCHC3   930000 perm   463 sec   (2007 perm/sec)   p_kst 7.956989e-04   p_cons 9.957462e-01   p_joint 3.552688e-03

Joint ci ratio: 6.780990e-02	ci left: 3.422399e-03	ci right 3.663654e-03	k: 3329	n:940000
Cons ci ratio: 2.641437e-04	ci left: 9.956175e-01	ci right 9.958816e-01	k: 936006	n:940000
KS ci ratio: 1.433682e-01	ci left: 7.377020e-04	ci right 8.526441e-04	k: 746	n:940000
ZCCHC3   940000 perm   472 sec   (1992 perm/sec)   p_kst 7.936170e-04   p_cons 9.957511e-01   p_joint 3.541489e-03

Joint ci ratio: 6.811978e-02	ci left: 3.355328e-03	ci right 3.592978e-03	k: 3299	n:950000
Cons ci ratio: 2.628315e-04	ci left: 9.956155e-01	ci right 9.958783e-01	k: 945961	n:950000
KS ci ratio: 1.425122e-01	ci left: 7.390716e-04	ci right 8.534811e-04	k: 755	n:950000
ZCCHC3   950000 perm   480 sec   (1978 perm/sec)   p_kst 7.947368e-04   p_cons 9.957484e-01   p_joint 3.472632e-03

Joint ci ratio: 6.781241e-02	ci left: 3.351095e-03	ci right 3.587333e-03	k: 3329	n:960000
Cons ci ratio: 2.613778e-04	ci left: 9.956189e-01	ci right 9.958802e-01	k: 955921	n:960000
KS ci ratio: 1.418570e-01	ci left: 7.384052e-04	ci right 8.521416e-04	k: 762	n:960000
ZCCHC3   960000 perm   488 sec   (1965 perm/sec)   p_kst 7.937500e-04   p_cons 9.957510e-01   p_joint 3.467708e-03

Joint ci ratio: 6.741862e-02	ci left: 3.356075e-03	ci right 3.591236e-03	k: 3368	n:970000
Cons ci ratio: 2.599795e-04	ci left: 9.956212e-01	ci right 9.958810e-01	k: 965880	n:970000
KS ci ratio: 1.411192e-01	ci left: 7.387483e-04	ci right 8.518958e-04	k: 770	n:970000
ZCCHC3   970000 perm   497 sec   (1952 perm/sec)   p_kst 7.938144e-04   p_cons 9.957526e-01   p_joint 3.472165e-03

Joint ci ratio: 6.702174e-02	ci left: 3.361960e-03	ci right 3.596092e-03	k: 3408	n:980000
Cons ci ratio: 2.589151e-04	ci left: 9.956130e-01	ci right 9.958718e-01	k: 975829	n:980000
KS ci ratio: 1.403026e-01	ci left: 7.400704e-04	ci right 8.527097e-04	k: 779	n:980000
ZCCHC3   980000 perm   505 sec   (1939 perm/sec)   p_kst 7.948980e-04   p_cons 9.957439e-01   p_joint 3.477551e-03

Joint ci ratio: 6.681672e-02	ci left: 3.348857e-03	ci right 3.581336e-03	k: 3429	n:990000
Cons ci ratio: 2.574331e-04	ci left: 9.956194e-01	ci right 9.958767e-01	k: 985792	n:990000
KS ci ratio: 1.395886e-01	ci left: 7.403929e-04	ci right 8.524601e-04	k: 787	n:990000
ZCCHC3   990000 perm   514 sec   (1926 perm/sec)   p_kst 7.949495e-04   p_cons 9.957495e-01   p_joint 3.463636e-03

Joint ci ratio: 7.037578e-02	ci left: 2.984125e-03	ci right 3.202769e-03	k: 3092	n:1000000
Cons ci ratio: 2.557638e-04	ci left: 9.956327e-01	ci right 9.958884e-01	k: 995762	n:1000000
KS ci ratio: 1.395006e-01	ci left: 7.339539e-04	ci right 8.449706e-04	k: 788	n:1000000
ZCCHC3   1000000 perm   523 sec   (1913 perm/sec)   p_kst 7.880000e-04   p_cons 9.957620e-01   p_joint 3.092000e-03

Joint ci ratio: 7.004823e-02	ci left: 2.982788e-03	ci right 3.200276e-03	k: 3121	n:1010000
Cons ci ratio: 2.543635e-04	ci left: 9.956378e-01	ci right 9.958920e-01	k: 1005724	n:1010000
KS ci ratio: 1.389733e-01	ci left: 7.324206e-04	ci right 8.427520e-04	k: 794	n:1010000
ZCCHC3   1010000 perm   531 sec   (1901 perm/sec)   p_kst 7.861386e-04   p_cons 9.957663e-01   p_joint 3.090099e-03

Joint ci ratio: 6.976964e-02	ci left: 2.977626e-03	ci right 3.193839e-03	k: 3146	n:1020000
Cons ci ratio: 2.531033e-04	ci left: 9.956388e-01	ci right 9.958917e-01	k: 1015682	n:1020000
KS ci ratio: 1.386252e-01	ci left: 7.290253e-04	ci right 8.385475e-04	k: 798	n:1020000
ZCCHC3   1020000 perm   540 sec   (1889 perm/sec)   p_kst 7.823529e-04   p_cons 9.957667e-01   p_joint 3.084314e-03

Joint ci ratio: 6.941756e-02	ci left: 2.979244e-03	ci right 3.194439e-03	k: 3178	n:1030000
Cons ci ratio: 2.515716e-04	ci left: 9.956496e-01	ci right 9.959010e-01	k: 1025650	n:1030000
KS ci ratio: 1.378510e-01	ci left: 7.303831e-04	ci right 8.394461e-04	k: 807	n:1030000
ZCCHC3   1030000 perm   549 sec   (1877 perm/sec)   p_kst 7.834951e-04   p_cons 9.957767e-01   p_joint 3.085437e-03

Joint ci ratio: 7.013026e-02	ci left: 2.890128e-03	ci right 3.101117e-03	k: 3114	n:1040000
Cons ci ratio: 2.502664e-04	ci left: 9.956533e-01	ci right 9.959035e-01	k: 1035611	n:1040000
KS ci ratio: 1.371735e-01	ci left: 7.307879e-04	ci right 8.393313e-04	k: 815	n:1040000
ZCCHC3   1040000 perm   558 sec   (1865 perm/sec)   p_kst 7.836538e-04   p_cons 9.957798e-01   p_joint 2.994231e-03

Joint ci ratio: 7.073740e-02	ci left: 2.813012e-03	ci right 3.020221e-03	k: 3061	n:1050000
Cons ci ratio: 2.490094e-04	ci left: 9.956561e-01	ci right 9.959050e-01	k: 1045571	n:1050000
KS ci ratio: 1.365890e-01	ci left: 7.302663e-04	ci right 8.382325e-04	k: 822	n:1050000
ZCCHC3   1050000 perm   567 sec   (1853 perm/sec)   p_kst 7.828571e-04   p_cons 9.957819e-01   p_joint 2.915238e-03

Joint ci ratio: 7.048488e-02	ci left: 2.806862e-03	ci right 3.012850e-03	k: 3083	n:1060000
Cons ci ratio: 2.479102e-04	ci left: 9.956540e-01	ci right 9.959018e-01	k: 1055526	n:1060000
KS ci ratio: 1.360118e-01	ci left: 7.297556e-04	ci right 8.371535e-04	k: 829	n:1060000
ZCCHC3   1060000 perm   576 sec   (1842 perm/sec)   p_kst 7.820755e-04   p_cons 9.957792e-01   p_joint 2.908491e-03

Joint ci ratio: 6.441151e-02	ci left: 3.338399e-03	ci right 3.561499e-03	k: 3690	n:1070000
Cons ci ratio: 2.468527e-04	ci left: 9.956510e-01	ci right 9.958977e-01	k: 1065480	n:1070000
KS ci ratio: 1.351997e-01	ci left: 7.319642e-04	ci right 8.389922e-04	k: 839	n:1070000
ZCCHC3   1070000 perm   585 sec   (1830 perm/sec)   p_kst 7.841121e-04   p_cons 9.957757e-01   p_joint 3.448598e-03

Joint ci ratio: 6.493539e-02	ci left: 3.253737e-03	ci right 3.473014e-03	k: 3631	n:1080000
Cons ci ratio: 2.455652e-04	ci left: 9.956565e-01	ci right 9.959019e-01	k: 1075443	n:1080000
KS ci ratio: 1.345604e-01	ci left: 7.323443e-04	ci right 8.388809e-04	k: 847	n:1080000
ZCCHC3   1080000 perm   594 sec   (1820 perm/sec)   p_kst 7.842593e-04   p_cons 9.957806e-01   p_joint 3.362037e-03

Joint ci ratio: 6.455410e-02	ci left: 3.262698e-03	ci right 3.481239e-03	k: 3674	n:1090000
Cons ci ratio: 2.447241e-04	ci left: 9.956470e-01	ci right 9.958916e-01	k: 1085390	n:1090000
KS ci ratio: 1.339302e-01	ci left: 7.327185e-04	ci right 8.387706e-04	k: 855	n:1090000
ZCCHC3   1090000 perm   603 sec   (1808 perm/sec)   p_kst 7.844037e-04   p_cons 9.957706e-01   p_joint 3.370642e-03

Joint ci ratio: 6.424884e-02	ci left: 3.264343e-03	ci right 3.481922e-03	k: 3709	n:1100000
Cons ci ratio: 2.437851e-04	ci left: 9.956414e-01	ci right 9.958851e-01	k: 1095341	n:1100000
KS ci ratio: 1.331545e-01	ci left: 7.348447e-04	ci right 8.405398e-04	k: 865	n:1100000
ZCCHC3   1100000 perm   612 sec   (1797 perm/sec)   p_kst 7.863636e-04   p_cons 9.957645e-01   p_joint 3.371818e-03

Joint ci ratio: 6.393931e-02	ci left: 3.266847e-03	ci right 3.483505e-03	k: 3745	n:1110000
Cons ci ratio: 2.426751e-04	ci left: 9.956423e-01	ci right 9.958848e-01	k: 1105299	n:1110000
KS ci ratio: 1.325437e-01	ci left: 7.351921e-04	ci right 8.404139e-04	k: 873	n:1110000
ZCCHC3   1110000 perm   622 sec   (1786 perm/sec)   p_kst 7.864865e-04   p_cons 9.957649e-01   p_joint 3.373874e-03

Joint ci ratio: 6.365109e-02	ci left: 3.267552e-03	ci right 3.483244e-03	k: 3779	n:1120000
Cons ci ratio: 2.416568e-04	ci left: 9.956405e-01	ci right 9.958820e-01	k: 1115254	n:1120000
KS ci ratio: 1.320161e-01	ci left: 7.346711e-04	ci right 8.393670e-04	k: 880	n:1120000
ZCCHC3   1120000 perm   631 sec   (1776 perm/sec)   p_kst 7.857143e-04   p_cons 9.957625e-01   p_joint 3.374107e-03

Joint ci ratio: 6.335008e-02	ci left: 3.269988e-03	ci right 3.484782e-03	k: 3815	n:1130000
Cons ci ratio: 2.406511e-04	ci left: 9.956387e-01	ci right 9.958791e-01	k: 1125209	n:1130000
KS ci ratio: 1.316433e-01	ci left: 7.324483e-04	ci right 8.365096e-04	k: 885	n:1130000
ZCCHC3   1130000 perm   640 sec   (1765 perm/sec)   p_kst 7.831858e-04   p_cons 9.957602e-01   p_joint 3.376106e-03

Joint ci ratio: 6.337602e-02	ci left: 3.238712e-03	ci right 3.451543e-03	k: 3812	n:1140000
Cons ci ratio: 2.394338e-04	ci left: 9.956449e-01	ci right 9.958842e-01	k: 1135173	n:1140000
KS ci ratio: 1.306877e-01	ci left: 7.370528e-04	ci right 8.409492e-04	k: 898	n:1140000
ZCCHC3   1140000 perm   650 sec   (1755 perm/sec)   p_kst 7.877193e-04   p_cons 9.957658e-01   p_joint 3.343860e-03

Joint ci ratio: 6.514027e-02	ci left: 3.036853e-03	ci right 3.242184e-03	k: 3609	n:1150000
Cons ci ratio: 2.382098e-04	ci left: 9.956519e-01	ci right 9.958899e-01	k: 1145138	n:1150000
KS ci ratio: 1.298953e-01	ci left: 7.398972e-04	ci right 8.435133e-04	k: 909	n:1150000
ZCCHC3   1150000 perm   659 sec   (1745 perm/sec)   p_kst 7.904348e-04   p_cons 9.957722e-01   p_joint 3.138261e-03

Joint ci ratio: 6.486238e-02	ci left: 3.036963e-03	ci right 3.241392e-03	k: 3640	n:1160000
Cons ci ratio: 2.373195e-04	ci left: 9.956474e-01	ci right 9.958846e-01	k: 1155090	n:1160000
KS ci ratio: 1.290470e-01	ci left: 7.435286e-04	ci right 8.469212e-04	k: 921	n:1160000
ZCCHC3   1160000 perm   669 sec   (1734 perm/sec)   p_kst 7.939655e-04   p_cons 9.957672e-01   p_joint 3.137931e-03

Joint ci ratio: 6.457920e-02	ci left: 3.037914e-03	ci right 3.241481e-03	k: 3672	n:1170000
Cons ci ratio: 2.362711e-04	ci left: 9.956491e-01	ci right 9.958852e-01	k: 1165049	n:1170000
KS ci ratio: 1.284216e-01	ci left: 7.446183e-04	ci right 8.476224e-04	k: 930	n:1170000
ZCCHC3   1170000 perm   679 sec   (1723 perm/sec)   p_kst 7.948718e-04   p_cons 9.957684e-01   p_joint 3.138462e-03

Joint ci ratio: 6.435199e-02	ci left: 3.033848e-03	ci right 3.236400e-03	k: 3698	n:1180000
Cons ci ratio: 2.354257e-04	ci left: 9.956439e-01	ci right 9.958791e-01	k: 1175000	n:1180000
KS ci ratio: 1.282155e-01	ci left: 7.407686e-04	ci right 8.430633e-04	k: 933	n:1180000
ZCCHC3   1180000 perm   689 sec   (1713 perm/sec)   p_kst 7.906780e-04   p_cons 9.957627e-01   p_joint 3.133898e-03

Joint ci ratio: 6.423970e-02	ci left: 3.019101e-03	ci right 3.220304e-03	k: 3711	n:1190000
Cons ci ratio: 2.342854e-04	ci left: 9.956498e-01	ci right 9.958839e-01	k: 1184964	n:1190000
KS ci ratio: 1.276699e-01	ci left: 7.410512e-04	ci right 8.429164e-04	k: 941	n:1190000
ZCCHC3   1190000 perm   699 sec   (1703 perm/sec)   p_kst 7.907563e-04   p_cons 9.957681e-01   p_joint 3.118487e-03

Joint ci ratio: 6.393031e-02	ci left: 3.023461e-03	ci right 3.223949e-03	k: 3747	n:1200000
Cons ci ratio: 2.332074e-04	ci left: 9.956539e-01	ci right 9.958870e-01	k: 1194926	n:1200000
KS ci ratio: 1.269308e-01	ci left: 7.437506e-04	ci right 8.453505e-04	k: 952	n:1200000
ZCCHC3   1200000 perm   709 sec   (1693 perm/sec)   p_kst 7.933333e-04   p_cons 9.957717e-01   p_joint 3.122500e-03

Joint ci ratio: 6.363378e-02	ci left: 3.026939e-03	ci right 3.226691e-03	k: 3782	n:1210000
Cons ci ratio: 2.323262e-04	ci left: 9.956513e-01	ci right 9.958835e-01	k: 1204880	n:1210000
KS ci ratio: 1.266654e-01	ci left: 7.408048e-04	ci right 8.417748e-04	k: 956	n:1210000
ZCCHC3   1210000 perm   719 sec   (1684 perm/sec)   p_kst 7.900826e-04   p_cons 9.957686e-01   p_joint 3.125620e-03

Joint ci ratio: 6.332471e-02	ci left: 3.031974e-03	ci right 3.231052e-03	k: 3819	n:1220000
Cons ci ratio: 2.309820e-04	ci left: 9.956662e-01	ci right 9.958970e-01	k: 1214855	n:1220000
KS ci ratio: 1.258785e-01	ci left: 7.442580e-04	ci right 8.450215e-04	k: 968	n:1220000
ZCCHC3   1220000 perm   729 sec   (1674 perm/sec)   p_kst 7.934426e-04   p_cons 9.957828e-01   p_joint 3.130328e-03

Joint ci ratio: 6.484141e-02	ci left: 2.866519e-03	ci right 3.059410e-03	k: 3643	n:1230000
Cons ci ratio: 2.301484e-04	ci left: 9.956627e-01	ci right 9.958927e-01	k: 1224808	n:1230000
KS ci ratio: 1.254907e-01	ci left: 7.429318e-04	ci right 8.431828e-04	k: 974	n:1230000
ZCCHC3   1230000 perm   739 sec   (1665 perm/sec)   p_kst 7.918699e-04   p_cons 9.957789e-01   p_joint 2.961789e-03

Joint ci ratio: 6.416578e-02	ci left: 2.904499e-03	ci right 3.097834e-03	k: 3720	n:1240000
Cons ci ratio: 2.293456e-04	ci left: 9.956584e-01	ci right 9.958876e-01	k: 1234760	n:1240000
KS ci ratio: 1.249154e-01	ci left: 7.439712e-04	ci right 8.438681e-04	k: 983	n:1240000
ZCCHC3   1240000 perm   749 sec   (1655 perm/sec)   p_kst 7.927419e-04   p_cons 9.957742e-01   p_joint 3.000000e-03

Joint ci ratio: 6.403722e-02	ci left: 2.893070e-03	ci right 3.085244e-03	k: 3735	n:1250000
Cons ci ratio: 2.282685e-04	ci left: 9.956648e-01	ci right 9.958929e-01	k: 1244725	n:1250000
KS ci ratio: 1.245364e-01	ci left: 7.426696e-04	ci right 8.420669e-04	k: 989	n:1250000
ZCCHC3   1250000 perm   759 sec   (1646 perm/sec)   p_kst 7.912000e-04   p_cons 9.957800e-01   p_joint 2.988000e-03

Joint ci ratio: 6.380714e-02	ci left: 2.891196e-03	ci right 3.082529e-03	k: 3762	n:1260000
Cons ci ratio: 2.274423e-04	ci left: 9.956622e-01	ci right 9.958895e-01	k: 1254679	n:1260000
KS ci ratio: 1.240985e-01	ci left: 7.421582e-04	ci right 8.411121e-04	k: 996	n:1260000
ZCCHC3   1260000 perm   769 sec   (1637 perm/sec)   p_kst 7.904762e-04   p_cons 9.957770e-01   p_joint 2.985714e-03

Joint ci ratio: 5.881961e-02	ci left: 3.382511e-03	ci right 3.588268e-03	k: 4425	n:1270000
Cons ci ratio: 2.264340e-04	ci left: 9.956668e-01	ci right 9.958931e-01	k: 1264642	n:1270000
KS ci ratio: 1.238505e-01	ci left: 7.393663e-04	ci right 8.377365e-04	k: 1000	n:1270000
ZCCHC3   1270000 perm   780 sec   (1628 perm/sec)   p_kst 7.874016e-04   p_cons 9.957811e-01   p_joint 3.484252e-03

Joint ci ratio: 5.857523e-02	ci left: 3.384567e-03	ci right 3.589565e-03	k: 4462	n:1280000
Cons ci ratio: 2.254597e-04	ci left: 9.956706e-01	ci right 9.958959e-01	k: 1274604	n:1280000
KS ci ratio: 1.232363e-01	ci left: 7.411611e-04	ci right 8.392454e-04	k: 1010	n:1280000
ZCCHC3   1280000 perm   791 sec   (1619 perm/sec)   p_kst 7.890625e-04   p_cons 9.957844e-01   p_joint 3.485937e-03

Joint ci ratio: 5.836642e-02	ci left: 3.382774e-03	ci right 3.586907e-03	k: 4494	n:1290000
Cons ci ratio: 2.246637e-04	ci left: 9.956680e-01	ci right 9.958925e-01	k: 1284558	n:1290000
KS ci ratio: 1.229934e-01	ci left: 7.384209e-04	ci right 8.359360e-04	k: 1014	n:1290000
ZCCHC3   1290000 perm   801 sec   (1610 perm/sec)   p_kst 7.860465e-04   p_cons 9.957814e-01   p_joint 3.483721e-03

Joint ci ratio: 5.824381e-02	ci left: 3.371154e-03	ci right 3.574145e-03	k: 4513	n:1300000
Cons ci ratio: 2.237325e-04	ci left: 9.956710e-01	ci right 9.958945e-01	k: 1294519	n:1300000
KS ci ratio: 1.223322e-01	ci left: 7.409427e-04	ci right 8.382267e-04	k: 1025	n:1300000
ZCCHC3   1300000 perm   812 sec   (1601 perm/sec)   p_kst 7.884615e-04   p_cons 9.957838e-01   p_joint 3.471538e-03

Joint ci ratio: 5.816706e-02	ci left: 3.354446e-03	ci right 3.556156e-03	k: 4525	n:1310000
Cons ci ratio: 2.225897e-04	ci left: 9.956824e-01	ci right 9.959048e-01	k: 1304491	n:1310000
KS ci ratio: 1.219761e-01	ci left: 7.397268e-04	ci right 8.365481e-04	k: 1031	n:1310000
ZCCHC3   1310000 perm   823 sec   (1592 perm/sec)   p_kst 7.870229e-04   p_cons 9.957947e-01   p_joint 3.454198e-03

Joint ci ratio: 5.994125e-02	ci left: 3.132722e-03	ci right 3.327044e-03	k: 4262	n:1320000
Cons ci ratio: 2.216434e-04	ci left: 9.956867e-01	ci right 9.959081e-01	k: 1314454	n:1320000
KS ci ratio: 1.215061e-01	ci left: 7.399989e-04	ci right 8.364556e-04	k: 1039	n:1320000
ZCCHC3   1320000 perm   833 sec   (1584 perm/sec)   p_kst 7.871212e-04   p_cons 9.957985e-01   p_joint 3.228788e-03

Joint ci ratio: 5.981543e-02	ci left: 3.122498e-03	ci right 3.315765e-03	k: 4280	n:1330000
Cons ci ratio: 2.211055e-04	ci left: 9.956757e-01	ci right 9.958966e-01	k: 1324397	n:1330000
KS ci ratio: 1.209837e-01	ci left: 7.409967e-04	ci right 8.371385e-04	k: 1048	n:1330000
ZCCHC3   1330000 perm   844 sec   (1575 perm/sec)   p_kst 7.879699e-04   p_cons 9.957872e-01   p_joint 3.218045e-03

Joint ci ratio: 5.971129e-02	ci left: 3.110222e-03	ci right 3.302383e-03	k: 4295	n:1340000
Cons ci ratio: 2.203938e-04	ci left: 9.956717e-01	ci right 9.958919e-01	k: 1334349	n:1340000
KS ci ratio: 1.205821e-01	ci left: 7.405329e-04	ci right 8.362729e-04	k: 1055	n:1340000
ZCCHC3   1340000 perm   855 sec   (1568 perm/sec)   p_kst 7.873134e-04   p_cons 9.957828e-01   p_joint 3.205224e-03

Joint ci ratio: 5.953155e-02	ci left: 3.106156e-03	ci right 3.297467e-03	k: 4321	n:1350000
Cons ci ratio: 2.196500e-04	ci left: 9.956692e-01	ci right 9.958887e-01	k: 1344303	n:1350000
KS ci ratio: 1.201844e-01	ci left: 7.400765e-04	ci right 8.354195e-04	k: 1062	n:1350000
ZCCHC3   1350000 perm   866 sec   (1559 perm/sec)   p_kst 7.866667e-04   p_cons 9.957800e-01   p_joint 3.200741e-03

Joint ci ratio: 5.948395e-02	ci left: 3.088386e-03	ci right 3.278445e-03	k: 4328	n:1360000
Cons ci ratio: 2.189710e-04	ci left: 9.956646e-01	ci right 9.958833e-01	k: 1354254	n:1360000
KS ci ratio: 1.195672e-01	ci left: 7.424805e-04	ci right 8.376073e-04	k: 1073	n:1360000
ZCCHC3   1360000 perm   877 sec   (1551 perm/sec)   p_kst 7.889706e-04   p_cons 9.957750e-01   p_joint 3.182353e-03

Joint ci ratio: 6.092753e-02	ci left: 2.920609e-03	ci right 3.104859e-03	k: 4126	n:1370000
Cons ci ratio: 2.026343e-04	ci left: 9.962509e-01	ci right 9.964535e-01	k: 1365004	n:1370000
KS ci ratio: 1.189046e-01	ci left: 7.455589e-04	ci right 8.405136e-04	k: 1085	n:1370000
ZCCHC3   1370000 perm   888 sec   (1543 perm/sec)   p_kst 7.919708e-04   p_cons 9.963533e-01   p_joint 3.011679e-03

Joint ci ratio: 6.070728e-02	ci left: 2.920854e-03	ci right 3.104430e-03	k: 4156	n:1380000
Cons ci ratio: 2.020099e-04	ci left: 9.962472e-01	ci right 9.964492e-01	k: 1374962	n:1380000
KS ci ratio: 1.185233e-01	ci left: 7.450782e-04	ci right 8.396459e-04	k: 1092	n:1380000
ZCCHC3   1380000 perm   899 sec   (1535 perm/sec)   p_kst 7.913043e-04   p_cons 9.963493e-01   p_joint 3.011594e-03

Joint ci ratio: 6.048217e-02	ci left: 2.921805e-03	ci right 3.104736e-03	k: 4187	n:1390000
Cons ci ratio: 2.012120e-04	ci left: 9.962502e-01	ci right 9.964514e-01	k: 1384929	n:1390000
KS ci ratio: 1.180919e-01	ci left: 7.453030e-04	ci right 8.395309e-04	k: 1100	n:1390000
ZCCHC3   1390000 perm   911 sec   (1526 perm/sec)   p_kst 7.913669e-04   p_cons 9.963518e-01   p_joint 3.012230e-03

Joint ci ratio: 6.032411e-02	ci left: 2.916412e-03	ci right 3.098511e-03	k: 4209	n:1400000
Cons ci ratio: 2.003248e-04	ci left: 9.962567e-01	ci right 9.964570e-01	k: 1394901	n:1400000
KS ci ratio: 1.176652e-01	ci left: 7.455252e-04	ci right 8.394170e-04	k: 1108	n:1400000
ZCCHC3   1400000 perm   922 sec   (1518 perm/sec)   p_kst 7.914286e-04   p_cons 9.963579e-01   p_joint 3.006429e-03

Joint ci ratio: 6.015302e-02	ci left: 2.912493e-03	ci right 3.093814e-03	k: 4233	n:1410000
Cons ci ratio: 1.997218e-04	ci left: 9.962530e-01	ci right 9.964527e-01	k: 1404859	n:1410000
KS ci ratio: 1.173483e-01	ci left: 7.443680e-04	ci right 8.378440e-04	k: 1114	n:1410000
ZCCHC3   1410000 perm   933 sec   (1511 perm/sec)   p_kst 7.900709e-04   p_cons 9.963539e-01   p_joint 3.002128e-03

Joint ci ratio: 5.997632e-02	ci left: 2.909323e-03	ci right 3.089896e-03	k: 4258	n:1420000
Cons ci ratio: 1.989890e-04	ci left: 9.962544e-01	ci right 9.964534e-01	k: 1414824	n:1420000
KS ci ratio: 1.170862e-01	ci left: 7.425438e-04	ci right 8.355681e-04	k: 1119	n:1420000
ZCCHC3   1420000 perm   945 sec   (1503 perm/sec)   p_kst 7.880282e-04   p_cons 9.963549e-01   p_joint 2.998592e-03

Joint ci ratio: 5.975223e-02	ci left: 2.911021e-03	ci right 3.091001e-03	k: 4290	n:1430000
Cons ci ratio: 1.983215e-04	ci left: 9.962537e-01	ci right 9.964520e-01	k: 1424786	n:1430000
KS ci ratio: 1.164637e-01	ci left: 7.454978e-04	ci right 8.383615e-04	k: 1131	n:1430000
ZCCHC3   1430000 perm   956 sec   (1495 perm/sec)   p_kst 7.909091e-04   p_cons 9.963538e-01   p_joint 3.000000e-03

Joint ci ratio: 5.951682e-02	ci left: 2.914065e-03	ci right 3.093499e-03	k: 4324	n:1440000
Cons ci ratio: 1.975851e-04	ci left: 9.962558e-01	ci right 9.964533e-01	k: 1434752	n:1440000
KS ci ratio: 1.161053e-01	ci left: 7.450404e-04	ci right 8.375420e-04	k: 1138	n:1440000
ZCCHC3   1440000 perm   968 sec   (1487 perm/sec)   p_kst 7.902778e-04   p_cons 9.963556e-01   p_joint 3.002778e-03

Joint ci ratio: 5.927053e-02	ci left: 2.918427e-03	ci right 3.097361e-03	k: 4360	n:1450000
Cons ci ratio: 1.970810e-04	ci left: 9.962495e-01	ci right 9.964465e-01	k: 1444706	n:1450000
KS ci ratio: 1.156493e-01	ci left: 7.459292e-04	ci right 8.381525e-04	k: 1147	n:1450000
ZCCHC3   1450000 perm   980 sec   (1479 perm/sec)   p_kst 7.910345e-04   p_cons 9.963490e-01   p_joint 3.006897e-03

Joint ci ratio: 6.050104e-02	ci left: 2.780363e-03	ci right 2.954495e-03	k: 4185	n:1460000
Cons ci ratio: 1.963214e-04	ci left: 9.962529e-01	ci right 9.964492e-01	k: 1454674	n:1460000
KS ci ratio: 1.154987e-01	ci left: 7.428154e-04	ci right 8.345260e-04	k: 1150	n:1460000
ZCCHC3   1460000 perm   992 sec   (1472 perm/sec)   p_kst 7.876712e-04   p_cons 9.963521e-01   p_joint 2.866438e-03

Joint ci ratio: 6.027104e-02	ci left: 2.782889e-03	ci right 2.956493e-03	k: 4217	n:1470000
Cons ci ratio: 1.956069e-04	ci left: 9.962550e-01	ci right 9.964505e-01	k: 1464640	n:1470000
KS ci ratio: 1.150497e-01	ci left: 7.437082e-04	ci right 8.351478e-04	k: 1159	n:1470000
ZCCHC3   1470000 perm   1004 sec   (1464 perm/sec)   p_kst 7.884354e-04   p_cons 9.963537e-01   p_joint 2.868707e-03

Joint ci ratio: 6.015018e-02	ci left: 2.775399e-03	ci right 2.948177e-03	k: 4234	n:1480000
Cons ci ratio: 1.948821e-04	ci left: 9.962577e-01	ci right 9.964525e-01	k: 1474607	n:1480000
KS ci ratio: 1.148520e-01	ci left: 7.413081e-04	ci right 8.322854e-04	k: 1163	n:1480000
ZCCHC3   1480000 perm   1016 sec   (1457 perm/sec)   p_kst 7.858108e-04   p_cons 9.963561e-01   p_joint 2.860811e-03

Joint ci ratio: 5.993119e-02	ci left: 2.777266e-03	ci right 2.949508e-03	k: 4265	n:1490000
Cons ci ratio: 1.941472e-04	ci left: 9.962610e-01	ci right 9.964551e-01	k: 1484575	n:1490000
KS ci ratio: 1.145572e-01	ci left: 7.402441e-04	ci right 8.308419e-04	k: 1169	n:1490000
ZCCHC3   1490000 perm   1028 sec   (1450 perm/sec)   p_kst 7.845638e-04   p_cons 9.963591e-01   p_joint 2.862416e-03

Joint ci ratio: 5.977039e-02	ci left: 2.773854e-03	ci right 2.945408e-03	k: 4288	n:1500000
Cons ci ratio: 1.935449e-04	ci left: 9.962596e-01	ci right 9.964531e-01	k: 1494536	n:1500000
KS ci ratio: 1.140707e-01	ci left: 7.417853e-04	ci right 8.321602e-04	k: 1179	n:1500000
ZCCHC3   1500000 perm   1040 sec   (1442 perm/sec)   p_kst 7.860000e-04   p_cons 9.963573e-01   p_joint 2.858667e-03

Joint ci ratio: 5.954859e-02	ci left: 2.776360e-03	ci right 2.947410e-03	k: 4320	n:1510000
Cons ci ratio: 1.929833e-04	ci left: 9.962569e-01	ci right 9.964498e-01	k: 1504495	n:1510000
KS ci ratio: 1.135426e-01	ci left: 7.439502e-04	ci right 8.341412e-04	k: 1190	n:1510000
ZCCHC3   1510000 perm   1052 sec   (1435 perm/sec)   p_kst 7.880795e-04   p_cons 9.963543e-01   p_joint 2.860927e-03

Joint ci ratio: 6.186801e-02	ci left: 2.552698e-03	ci right 2.716312e-03	k: 4003	n:1520000
Cons ci ratio: 1.924090e-04	ci left: 9.962548e-01	ci right 9.964472e-01	k: 1514455	n:1520000
KS ci ratio: 1.131159e-01	ci left: 7.448091e-04	ci right 8.347422e-04	k: 1199	n:1520000
ZCCHC3   1520000 perm   1064 sec   (1428 perm/sec)   p_kst 7.888158e-04   p_cons 9.963520e-01   p_joint 2.633553e-03

Joint ci ratio: 5.733642e-02	ci left: 2.958408e-03	ci right 3.133678e-03	k: 4659	n:1530000
Cons ci ratio: 1.917363e-04	ci left: 9.962568e-01	ci right 9.964485e-01	k: 1524421	n:1530000
KS ci ratio: 1.128343e-01	ci left: 7.437518e-04	ci right 8.333187e-04	k: 1205	n:1530000
ZCCHC3   1530000 perm   1077 sec   (1421 perm/sec)   p_kst 7.875817e-04   p_cons 9.963536e-01   p_joint 3.045098e-03

Joint ci ratio: 5.715887e-02	ci left: 2.957759e-03	ci right 3.132430e-03	k: 4688	n:1540000
Cons ci ratio: 1.911389e-04	ci left: 9.962561e-01	ci right 9.964472e-01	k: 1534383	n:1540000
KS ci ratio: 1.126012e-01	ci left: 7.420774e-04	ci right 8.312459e-04	k: 1210	n:1540000
ZCCHC3   1540000 perm   1089 sec   (1414 perm/sec)   p_kst 7.857143e-04   p_cons 9.963526e-01   p_joint 3.044156e-03

Joint ci ratio: 5.697085e-02	ci left: 2.958391e-03	ci right 3.132506e-03	k: 4719	n:1550000
Cons ci ratio: 1.903948e-04	ci left: 9.962613e-01	ci right 9.964517e-01	k: 1544354	n:1550000
KS ci ratio: 1.121851e-01	ci left: 7.429330e-04	ci right 8.318526e-04	k: 1219	n:1550000
ZCCHC3   1550000 perm   1101 sec   (1407 perm/sec)   p_kst 7.864516e-04   p_cons 9.963574e-01   p_joint 3.044516e-03

Joint ci ratio: 5.679666e-02	ci left: 2.957752e-03	ci right 3.131280e-03	k: 4748	n:1560000
Cons ci ratio: 1.898266e-04	ci left: 9.962600e-01	ci right 9.964497e-01	k: 1554315	n:1560000
KS ci ratio: 1.117280e-01	ci left: 7.444014e-04	ci right 8.331098e-04	k: 1229	n:1560000
ZCCHC3   1560000 perm   1114 sec   (1400 perm/sec)   p_kst 7.878205e-04   p_cons 9.963558e-01   p_joint 3.043590e-03

Joint ci ratio: 5.657657e-02	ci left: 2.962146e-03	ci right 3.135236e-03	k: 4785	n:1570000
Cons ci ratio: 1.893795e-04	ci left: 9.962541e-01	ci right 9.964434e-01	k: 1564269	n:1570000
KS ci ratio: 1.113214e-01	ci left: 7.452326e-04	ci right 8.336957e-04	k: 1238	n:1570000
ZCCHC3   1570000 perm   1127 sec   (1393 perm/sec)   p_kst 7.885350e-04   p_cons 9.963497e-01   p_joint 3.047771e-03

Joint ci ratio: 5.638835e-02	ci left: 2.963366e-03	ci right 3.135932e-03	k: 4817	n:1580000
Cons ci ratio: 1.889515e-04	ci left: 9.962477e-01	ci right 9.964366e-01	k: 1574222	n:1580000
KS ci ratio: 1.109638e-01	ci left: 7.454385e-04	ci right 8.336231e-04	k: 1246	n:1580000
ZCCHC3   1580000 perm   1139 sec   (1387 perm/sec)   p_kst 7.886076e-04   p_cons 9.963430e-01   p_joint 3.048734e-03

Joint ci ratio: 5.633614e-02	ci left: 2.950308e-03	ci right 3.121950e-03	k: 4826	n:1590000
Cons ci ratio: 1.881356e-04	ci left: 9.962566e-01	ci right 9.964447e-01	k: 1584199	n:1590000
KS ci ratio: 1.106979e-01	ci left: 7.444191e-04	ci right 8.322584e-04	k: 1252	n:1590000
ZCCHC3   1590000 perm   1152 sec   (1380 perm/sec)   p_kst 7.874214e-04   p_cons 9.963516e-01   p_joint 3.035220e-03

Joint ci ratio: 5.627240e-02	ci left: 2.938647e-03	ci right 3.109410e-03	k: 4837	n:1600000
Cons ci ratio: 1.874260e-04	ci left: 9.962617e-01	ci right 9.964490e-01	k: 1594170	n:1600000
KS ci ratio: 1.103900e-01	ci left: 7.440206e-04	ci right 8.315527e-04	k: 1259	n:1600000
ZCCHC3   1600000 perm   1164 sec   (1374 perm/sec)   p_kst 7.868750e-04   p_cons 9.963563e-01   p_joint 3.023125e-03

Joint ci ratio: 5.607563e-02	ci left: 2.941216e-03	ci right 3.111512e-03	k: 4871	n:1610000
Cons ci ratio: 1.867560e-04	ci left: 9.962654e-01	ci right 9.964521e-01	k: 1604139	n:1610000
KS ci ratio: 1.098679e-01	ci left: 7.466475e-04	ci right 8.340464e-04	k: 1271	n:1610000
ZCCHC3   1610000 perm   1177 sec   (1368 perm/sec)   p_kst 7.894410e-04   p_cons 9.963596e-01   p_joint 3.025466e-03

Joint ci ratio: 5.622684e-02	ci left: 2.907235e-03	ci right 3.076032e-03	k: 4845	n:1620000
Cons ci ratio: 1.860771e-04	ci left: 9.962697e-01	ci right 9.964557e-01	k: 1614109	n:1620000
KS ci ratio: 1.095668e-01	ci left: 7.462409e-04	ci right 8.333375e-04	k: 1278	n:1620000
ZCCHC3   1620000 perm   1190 sec   (1361 perm/sec)   p_kst 7.888889e-04   p_cons 9.963636e-01   p_joint 2.990741e-03

Joint ci ratio: 5.624482e-02	ci left: 2.887583e-03	ci right 3.055295e-03	k: 4842	n:1630000
Cons ci ratio: 1.855938e-04	ci left: 9.962665e-01	ci right 9.964520e-01	k: 1624067	n:1630000
KS ci ratio: 1.091409e-01	ci left: 7.476300e-04	ci right 8.345276e-04	k: 1288	n:1630000
ZCCHC3   1630000 perm   1203 sec   (1355 perm/sec)   p_kst 7.901840e-04   p_cons 9.963601e-01   p_joint 2.970552e-03

Joint ci ratio: 5.611186e-02	ci left: 2.883803e-03	ci right 3.050886e-03	k: 4865	n:1640000
Cons ci ratio: 1.849586e-04	ci left: 9.962695e-01	ci right 9.964544e-01	k: 1634035	n:1640000
KS ci ratio: 1.089300e-01	ci left: 7.460369e-04	ci right 8.325710e-04	k: 1293	n:1640000
ZCCHC3   1640000 perm   1216 sec   (1348 perm/sec)   p_kst 7.884146e-04   p_cons 9.963628e-01   p_joint 2.966463e-03

Joint ci ratio: 5.597983e-02	ci left: 2.880070e-03	ci right 3.046531e-03	k: 4888	n:1650000
Cons ci ratio: 1.842681e-04	ci left: 9.962749e-01	ci right 9.964591e-01	k: 1644007	n:1650000
KS ci ratio: 1.085531e-01	ci left: 7.468216e-04	ci right 8.331279e-04	k: 1302	n:1650000
ZCCHC3   1650000 perm   1229 sec   (1343 perm/sec)   p_kst 7.890909e-04   p_cons 9.963679e-01   p_joint 2.962424e-03

Joint ci ratio: 5.579748e-02	ci left: 2.881728e-03	ci right 3.047725e-03	k: 4920	n:1660000
Cons ci ratio: 1.837378e-04	ci left: 9.962742e-01	ci right 9.964578e-01	k: 1653969	n:1660000
KS ci ratio: 1.080977e-01	ci left: 7.487697e-04	ci right 8.349150e-04	k: 1313	n:1660000
ZCCHC3   1660000 perm   1242 sec   (1336 perm/sec)   p_kst 7.909639e-04   p_cons 9.963669e-01   p_joint 2.963855e-03

Joint ci ratio: 5.317913e-02	ci left: 3.156854e-03	ci right 3.329905e-03	k: 5415	n:1670000
Cons ci ratio: 1.831514e-04	ci left: 9.962759e-01	ci right 9.964589e-01	k: 1663935	n:1670000
KS ci ratio: 1.078109e-01	ci left: 7.483645e-04	ci right 8.342203e-04	k: 1320	n:1670000
ZCCHC3   1670000 perm   1255 sec   (1330 perm/sec)   p_kst 7.904192e-04   p_cons 9.963683e-01   p_joint 3.242515e-03

Joint ci ratio: 5.172888e-02	ci left: 3.318413e-03	ci right 3.495211e-03	k: 5722	n:1680000
Cons ci ratio: 1.828108e-04	ci left: 9.962679e-01	ci right 9.964506e-01	k: 1673885	n:1680000
KS ci ratio: 1.072841e-01	ci left: 7.514400e-04	ci right 8.372008e-04	k: 1333	n:1680000
ZCCHC3   1680000 perm   1269 sec   (1324 perm/sec)   p_kst 7.934524e-04   p_cons 9.963601e-01   p_joint 3.405952e-03

Joint ci ratio: 5.171127e-02	ci left: 3.301112e-03	ci right 3.476928e-03	k: 5726	n:1690000
Cons ci ratio: 1.821293e-04	ci left: 9.962738e-01	ci right 9.964558e-01	k: 1683858	n:1690000
KS ci ratio: 1.070837e-01	ci left: 7.498728e-04	ci right 8.352848e-04	k: 1338	n:1690000
ZCCHC3   1690000 perm   1282 sec   (1318 perm/sec)   p_kst 7.917160e-04   p_cons 9.963657e-01   p_joint 3.388166e-03

Joint ci ratio: 5.152705e-02	ci left: 3.305501e-03	ci right 3.480904e-03	k: 5767	n:1700000
Cons ci ratio: 1.816171e-04	ci left: 9.962731e-01	ci right 9.964546e-01	k: 1693820	n:1700000
KS ci ratio: 1.065675e-01	ci left: 7.529046e-04	ci right 8.382226e-04	k: 1351	n:1700000
ZCCHC3   1700000 perm   1295 sec   (1312 perm/sec)   p_kst 7.947059e-04   p_cons 9.963647e-01   p_joint 3.392353e-03

Joint ci ratio: 5.137141e-02	ci left: 3.306375e-03	ci right 3.481279e-03	k: 5802	n:1710000
Cons ci ratio: 1.809777e-04	ci left: 9.962777e-01	ci right 9.964586e-01	k: 1703791	n:1710000
KS ci ratio: 1.062927e-01	ci left: 7.524862e-04	ci right 8.375232e-04	k: 1358	n:1710000
ZCCHC3   1710000 perm   1309 sec   (1306 perm/sec)   p_kst 7.941520e-04   p_cons 9.963690e-01   p_joint 3.392982e-03

Joint ci ratio: 5.151015e-02	ci left: 3.269359e-03	ci right 3.442785e-03	k: 5771	n:1720000
Cons ci ratio: 1.804173e-04	ci left: 9.962793e-01	ci right 9.964597e-01	k: 1713757	n:1720000
KS ci ratio: 1.059812e-01	ci left: 7.526390e-04	ci right 8.374285e-04	k: 1366	n:1720000
ZCCHC3   1720000 perm   1322 sec   (1301 perm/sec)   p_kst 7.941860e-04   p_cons 9.963703e-01   p_joint 3.355233e-03

Joint ci ratio: 5.137686e-02	ci left: 3.267579e-03	ci right 3.440449e-03	k: 5801	n:1730000
Cons ci ratio: 1.798764e-04	ci left: 9.962804e-01	ci right 9.964602e-01	k: 1723722	n:1730000
KS ci ratio: 1.056341e-01	ci left: 7.533532e-04	ci right 8.379278e-04	k: 1375	n:1730000
ZCCHC3   1730000 perm   1336 sec   (1295 perm/sec)   p_kst 7.947977e-04   p_cons 9.963711e-01   p_joint 3.353179e-03

Joint ci ratio: 5.124020e-02	ci left: 3.266387e-03	ci right 3.438721e-03	k: 5832	n:1740000
Cons ci ratio: 1.795682e-04	ci left: 9.962721e-01	ci right 9.964516e-01	k: 1733671	n:1740000
KS ci ratio: 1.052902e-01	ci left: 7.540595e-04	ci right 8.384209e-04	k: 1384	n:1740000
ZCCHC3   1740000 perm   1350 sec   (1289 perm/sec)   p_kst 7.954023e-04   p_cons 9.963626e-01   p_joint 3.351724e-03

Joint ci ratio: 5.112649e-02	ci left: 3.262389e-03	ci right 3.434119e-03	k: 5858	n:1750000
Cons ci ratio: 1.791337e-04	ci left: 9.962691e-01	ci right 9.964481e-01	k: 1743629	n:1750000
KS ci ratio: 1.052145e-01	ci left: 7.508633e-04	ci right 8.348029e-04	k: 1386	n:1750000
ZCCHC3   1750000 perm   1364 sec   (1283 perm/sec)   p_kst 7.920000e-04   p_cons 9.963594e-01   p_joint 3.347429e-03

Joint ci ratio: 5.131183e-02	ci left: 3.220293e-03	ci right 3.390439e-03	k: 5816	n:1760000
Cons ci ratio: 1.787442e-04	ci left: 9.962644e-01	ci right 9.964430e-01	k: 1753584	n:1760000
KS ci ratio: 1.051010e-01	ci left: 7.482567e-04	ci right 8.318091e-04	k: 1389	n:1760000
ZCCHC3   1760000 perm   1377 sec   (1278 perm/sec)   p_kst 7.892045e-04   p_cons 9.963545e-01   p_joint 3.304545e-03

Joint ci ratio: 5.140994e-02	ci left: 3.189828e-03	ci right 3.358697e-03	k: 5794	n:1770000
Cons ci ratio: 1.783292e-04	ci left: 9.962609e-01	ci right 9.964391e-01	k: 1763541	n:1770000
KS ci ratio: 1.047624e-01	ci left: 7.489806e-04	ci right 8.323278e-04	k: 1398	n:1770000
ZCCHC3   1770000 perm   1391 sec   (1272 perm/sec)   p_kst 7.898305e-04   p_cons 9.963508e-01   p_joint 3.273446e-03

Joint ci ratio: 5.169309e-02	ci left: 3.136968e-03	ci right 3.303980e-03	k: 5731	n:1780000
Cons ci ratio: 1.778345e-04	ci left: 9.962609e-01	ci right 9.964386e-01	k: 1773504	n:1780000
KS ci ratio: 1.044270e-01	ci left: 7.496968e-04	ci right 8.328401e-04	k: 1407	n:1780000
ZCCHC3   1780000 perm   1405 sec   (1267 perm/sec)   p_kst 7.904494e-04   p_cons 9.963506e-01   p_joint 3.219663e-03

Joint ci ratio: 5.332336e-02	ci left: 2.929779e-03	ci right 3.090830e-03	k: 5387	n:1790000
Cons ci ratio: 1.773166e-04	ci left: 9.962620e-01	ci right 9.964392e-01	k: 1783469	n:1790000
KS ci ratio: 1.042053e-01	ci left: 7.487730e-04	ci right 8.316268e-04	k: 1413	n:1790000
ZCCHC3   1790000 perm   1420 sec   (1261 perm/sec)   p_kst 7.893855e-04   p_cons 9.963514e-01   p_joint 3.009497e-03

Joint ci ratio: 5.364937e-02	ci left: 2.877872e-03	ci right 3.037067e-03	k: 5322	n:1800000
Cons ci ratio: 1.766410e-04	ci left: 9.962698e-01	ci right 9.964464e-01	k: 1793446	n:1800000
KS ci ratio: 1.039483e-01	ci left: 7.484008e-04	ci right 8.309967e-04	k: 1420	n:1800000
ZCCHC3   1800000 perm   1434 sec   (1255 perm/sec)   p_kst 7.888889e-04   p_cons 9.963589e-01   p_joint 2.956667e-03

Joint ci ratio: 5.352389e-02	ci left: 2.875599e-03	ci right 3.034285e-03	k: 5347	n:1810000
Cons ci ratio: 1.762406e-04	ci left: 9.962664e-01	ci right 9.964425e-01	k: 1803403	n:1810000
KS ci ratio: 1.036569e-01	ci left: 7.485712e-04	ci right 8.309402e-04	k: 1428	n:1810000
ZCCHC3   1810000 perm   1448 sec   (1250 perm/sec)   p_kst 7.889503e-04   p_cons 9.963552e-01   p_joint 2.954144e-03

Joint ci ratio: 5.336942e-02	ci left: 2.876604e-03	ci right 3.034874e-03	k: 5378	n:1820000
Cons ci ratio: 1.756567e-04	ci left: 9.962708e-01	ci right 9.964463e-01	k: 1813374	n:1820000
KS ci ratio: 1.031885e-01	ci left: 7.514163e-04	ci right 8.337021e-04	k: 1441	n:1820000
ZCCHC3   1820000 perm   1462 sec   (1244 perm/sec)   p_kst 7.917582e-04   p_cons 9.963593e-01   p_joint 2.954945e-03

Joint ci ratio: 5.321134e-02	ci left: 2.878139e-03	ci right 3.036009e-03	k: 5410	n:1830000
Cons ci ratio: 1.751575e-04	ci left: 9.962718e-01	ci right 9.964468e-01	k: 1823339	n:1830000
KS ci ratio: 1.027971e-01	ci left: 7.531663e-04	ci right 8.353120e-04	k: 1452	n:1830000
ZCCHC3   1830000 perm   1477 sec   (1239 perm/sec)   p_kst 7.934426e-04   p_cons 9.963601e-01   p_joint 2.956284e-03

Joint ci ratio: 5.307911e-02	ci left: 2.876975e-03	ci right 3.034378e-03	k: 5437	n:1840000
Cons ci ratio: 1.746494e-04	ci left: 9.962734e-01	ci right 9.964479e-01	k: 1833305	n:1840000
KS ci ratio: 1.025152e-01	ci left: 7.533092e-04	ci right 8.352317e-04	k: 1460	n:1840000
ZCCHC3   1840000 perm   1491 sec   (1234 perm/sec)   p_kst 7.934783e-04   p_cons 9.963614e-01   p_joint 2.954891e-03

Joint ci ratio: 5.297704e-02	ci left: 2.872625e-03	ci right 3.029478e-03	k: 5458	n:1850000
Cons ci ratio: 1.740028e-04	ci left: 9.962809e-01	ci right 9.964548e-01	k: 1843282	n:1850000
KS ci ratio: 1.023403e-01	ci left: 7.518707e-04	ci right 8.334888e-04	k: 1465	n:1850000
ZCCHC3   1850000 perm   1506 sec   (1228 perm/sec)   p_kst 7.918919e-04   p_cons 9.963686e-01   p_joint 2.950270e-03

Joint ci ratio: 5.281759e-02	ci left: 2.874688e-03	ci right 3.031167e-03	k: 5491	n:1860000
Cons ci ratio: 1.863548e-04	ci left: 9.957207e-01	ci right 9.959068e-01	k: 1852215	n:1860000
KS ci ratio: 1.019930e-01	ci left: 7.530674e-04	ci right 8.345214e-04	k: 1475	n:1860000
ZCCHC3   1860000 perm   1520 sec   (1223 perm/sec)   p_kst 7.930108e-04   p_cons 9.958145e-01   p_joint 2.952151e-03

Joint ci ratio: 5.267870e-02	ci left: 2.874619e-03	ci right 3.030670e-03	k: 5520	n:1870000
Cons ci ratio: 1.858575e-04	ci left: 9.957209e-01	ci right 9.959065e-01	k: 1862173	n:1870000
KS ci ratio: 1.018896e-01	ci left: 7.506036e-04	ci right 8.317039e-04	k: 1478	n:1870000
ZCCHC3   1870000 perm   1535 sec   (1218 perm/sec)   p_kst 7.903743e-04   p_cons 9.958144e-01   p_joint 2.951872e-03

Joint ci ratio: 5.256465e-02	ci left: 2.871926e-03	ci right 3.027484e-03	k: 5544	n:1880000
Cons ci ratio: 1.853287e-04	ci left: 9.957227e-01	ci right 9.959077e-01	k: 1872134	n:1880000
KS ci ratio: 1.017866e-01	ci left: 7.481661e-04	ci right 8.289164e-04	k: 1481	n:1880000
ZCCHC3   1880000 perm   1550 sec   (1213 perm/sec)   p_kst 7.877660e-04   p_cons 9.958160e-01   p_joint 2.948936e-03

Joint ci ratio: 5.243717e-02	ci left: 2.870829e-03	ci right 3.025938e-03	k: 5571	n:1890000
Cons ci ratio: 1.848279e-04	ci left: 9.957234e-01	ci right 9.959079e-01	k: 1882093	n:1890000
KS ci ratio: 1.016496e-01	ci left: 7.462701e-04	ci right 8.267009e-04	k: 1485	n:1890000
ZCCHC3   1890000 perm   1564 sec   (1208 perm/sec)   p_kst 7.857143e-04   p_cons 9.958164e-01   p_joint 2.947619e-03

Joint ci ratio: 5.228253e-02	ci left: 2.872860e-03	ci right 3.027608e-03	k: 5604	n:1900000
Cons ci ratio: 1.843893e-04	ci left: 9.957214e-01	ci right 9.959055e-01	k: 1892047	n:1900000
KS ci ratio: 1.013093e-01	ci left: 7.474719e-04	ci right 8.277465e-04	k: 1495	n:1900000
ZCCHC3   1900000 perm   1579 sec   (1203 perm/sec)   p_kst 7.868421e-04   p_cons 9.958142e-01   p_joint 2.949474e-03

Joint ci ratio: 5.217568e-02	ci left: 2.869704e-03	ci right 3.023956e-03	k: 5627	n:1910000
Cons ci ratio: 1.838613e-04	ci left: 9.957237e-01	ci right 9.959073e-01	k: 1902009	n:1910000
KS ci ratio: 1.009388e-01	ci left: 7.491720e-04	ci right 8.293174e-04	k: 1506	n:1910000
ZCCHC3   1910000 perm   1594 sec   (1198 perm/sec)   p_kst 7.884817e-04   p_cons 9.958162e-01   p_joint 2.946073e-03

Joint ci ratio: 5.203717e-02	ci left: 2.870179e-03	ci right 3.024035e-03	k: 5657	n:1920000
Cons ci ratio: 1.832920e-04	ci left: 9.957280e-01	ci right 9.959111e-01	k: 1911975	n:1920000
KS ci ratio: 1.006387e-01	ci left: 7.498394e-04	ci right 8.298037e-04	k: 1515	n:1920000
ZCCHC3   1920000 perm   1609 sec   (1193 perm/sec)   p_kst 7.890625e-04   p_cons 9.958203e-01   p_joint 2.946354e-03

Joint ci ratio: 5.189517e-02	ci left: 2.871161e-03	ci right 3.024637e-03	k: 5688	n:1930000
Cons ci ratio: 1.827505e-04	ci left: 9.957313e-01	ci right 9.959138e-01	k: 1921939	n:1930000
KS ci ratio: 1.003742e-01	ci left: 7.499951e-04	ci right 8.297534e-04	k: 1523	n:1930000
ZCCHC3   1930000 perm   1624 sec   (1188 perm/sec)   p_kst 7.891192e-04   p_cons 9.958233e-01   p_joint 2.947150e-03

Joint ci ratio: 5.179522e-02	ci left: 2.867554e-03	ci right 3.020533e-03	k: 5710	n:1940000
Cons ci ratio: 1.823831e-04	ci left: 9.957268e-01	ci right 9.959089e-01	k: 1931888	n:1940000
KS ci ratio: 1.002100e-01	ci left: 7.486418e-04	ci right 8.281183e-04	k: 1528	n:1940000
ZCCHC3   1940000 perm   1639 sec   (1183 perm/sec)   p_kst 7.876289e-04   p_cons 9.958186e-01   p_joint 2.943299e-03

Joint ci ratio: 5.165068e-02	ci left: 2.869047e-03	ci right 3.021666e-03	k: 5742	n:1950000
Cons ci ratio: 1.818832e-04	ci left: 9.957284e-01	ci right 9.959101e-01	k: 1941849	n:1950000
KS ci ratio: 9.975418e-02	ci left: 7.518027e-04	ci right 8.312304e-04	k: 1542	n:1950000
ZCCHC3   1950000 perm   1654 sec   (1179 perm/sec)   p_kst 7.907692e-04   p_cons 9.958200e-01   p_joint 2.944615e-03

Outputting figure to mutsig2_images.part000000000193/ZCCHC3.4_1219_1950000_0.00079077_0.99582_0.0029446.png
                gene_name: ZCCHC3
               theta_stop: 0.100 
                    nperm: 1950000 
                     p_ks: 0.00079 
        ci_ks_bounds_left: 0.00075 
       ci_ks_bounds_right: 0.00083 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.0029 
     ci_joint_bounds_left: 0.0029 
    ci_joint_bounds_right: 0.0030 

Current progress: 39 percent done.
ZDHHC15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.449503e-02	ci left: 4.271481e-01	ci right 4.466887e-01	k: 4369	n:10000
Cons ci ratio: 6.154471e-02	ci left: 2.796327e-01	ci right 2.974906e-01	k: 2885	n:10000
KS ci ratio: 5.326853e-02	ci left: 3.418387e-01	ci right 3.606481e-01	k: 3512	n:10000
ZDHHC15   10000 perm   1 sec   (7238 perm/sec)   p_kst 3.512000e-01   p_cons 2.885000e-01   p_joint 4.369000e-01

Outputting figure to mutsig2_images.part000000000193/ZDHHC15.4_1138_10000_0.3512_0.2885_0.4369.png
                gene_name: ZDHHC15
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 41 percent done.
ZBTB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.807373e-02	ci left: 5.046513e-01	ci right 5.243403e-01	k: 5145	n:10000
Cons ci ratio: 6.000711e-02	ci left: 2.900365e-01	ci right 3.080807e-01	k: 2990	n:10000
KS ci ratio: 4.714180e-02	ci left: 3.990427e-01	ci right 4.184105e-01	k: 4087	n:10000
ZBTB4   10000 perm   2 sec   (6519 perm/sec)   p_kst 4.087000e-01   p_cons 2.990000e-01   p_joint 5.145000e-01

Outputting figure to mutsig2_images.part000000000193/ZBTB4.3_3050_10000_0.4087_0.299_0.5145.png
                gene_name: ZBTB4
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 43 percent done.
ZBTB7B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.799423e-02	ci left: 3.044128e-01	ci right 3.226959e-01	k: 3135	n:10000
Cons ci ratio: 5.580505e-02	ci left: 3.210824e-01	ci right 3.396165e-01	k: 3303	n:10000
KS ci ratio: 6.546793e-02	ci left: 2.551824e-01	ci right 2.725554e-01	k: 2638	n:10000
ZBTB7B   10000 perm   1 sec   (7230 perm/sec)   p_kst 2.638000e-01   p_cons 3.303000e-01   p_joint 3.135000e-01

Outputting figure to mutsig2_images.part000000000193/ZBTB7B.3_1628_10000_0.2638_0.3303_0.3135.png
                gene_name: ZBTB7B
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 45 percent done.
ZC3H12B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.122849e-02	ci left: 3.597307e-01	ci right 3.787456e-01	k: 3692	n:10000
KS ci ratio: 4.471269e-02	ci left: 4.247549e-01	ci right 4.442833e-01	k: 4345	n:10000
ZC3H12B   10000 perm   2 sec   (6498 perm/sec)   p_kst 4.345000e-01   p_cons 3.692000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000193/ZC3H12B.3_2531_10000_0.4345_0.3692_1.png
                gene_name: ZC3H12B
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 48 percent done.
ZC3H14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.217497e-01	ci left: 2.693317e-02	ci right 3.374407e-02	k: 302	n:10000
Cons ci ratio: 1.458093e-01	ci left: 6.246605e-02	ci right 7.238775e-02	k: 673	n:10000
KS ci ratio: 1.814227e-01	ci left: 4.054168e-02	ci right 4.872625e-02	k: 445	n:10000
ZC3H14   10000 perm   1 sec   (6743 perm/sec)   p_kst 4.450000e-02   p_cons 6.730000e-02   p_joint 3.020000e-02

Joint ci ratio: 2.908546e-01	ci left: 7.691529e-03	ci right 1.035416e-02	k: 179	n:20000
Cons ci ratio: 1.002630e-01	ci left: 6.742937e-02	ci right 7.459595e-02	k: 1419	n:20000
KS ci ratio: 1.298188e-01	ci left: 4.076302e-02	ci right 4.647062e-02	k: 871	n:20000
ZC3H14   20000 perm   3 sec   (5998 perm/sec)   p_kst 4.355000e-02   p_cons 7.095000e-02   p_joint 8.950000e-03

Joint ci ratio: 1.677961e-01	ci left: 1.636590e-02	ci right 1.939517e-02	k: 535	n:30000
Cons ci ratio: 8.468047e-02	ci left: 6.383672e-02	ci right 6.951422e-02	k: 1999	n:30000
KS ci ratio: 1.108246e-01	ci left: 3.781053e-02	ci right 4.227910e-02	k: 1200	n:30000
ZC3H14   30000 perm   5 sec   (5725 perm/sec)   p_kst 4.000000e-02   p_cons 6.663333e-02   p_joint 1.783333e-02

Joint ci ratio: 9.892069e-02	ci left: 3.590336e-02	ci right 3.966412e-02	k: 1510	n:40000
Cons ci ratio: 7.020792e-02	ci left: 6.975602e-02	ci right 7.485628e-02	k: 2891	n:40000
KS ci ratio: 9.696979e-02	ci left: 3.734358e-02	ci right 4.117368e-02	k: 1569	n:40000
ZC3H14   40000 perm   7 sec   (5536 perm/sec)   p_kst 3.922500e-02   p_cons 7.227500e-02   p_joint 3.775000e-02

Outputting figure to mutsig2_images.part000000000193/ZC3H14.3_2668_40000_0.039225_0.072275_0.03775.png
                gene_name: ZC3H14
               theta_stop: 0.099 
                    nperm: 40000 
                     p_ks: 0.039 
        ci_ks_bounds_left: 0.037 
       ci_ks_bounds_right: 0.041 
                   p_cons: 0.072 
      ci_cons_bounds_left: 0.070 
     ci_cons_bounds_right: 0.075 
                  p_joint: 0.038 
     ci_joint_bounds_left: 0.036 
    ci_joint_bounds_right: 0.040 

Current progress: 50 percent done.
ZC3H18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.566060e-02	ci left: 8.554928e-01	ci right 8.690954e-01	k: 8624	n:10000
KS ci ratio: 3.406402e-02	ci left: 5.599267e-01	ci right 5.794327e-01	k: 5697	n:10000
ZC3H18   10000 perm   2 sec   (6414 perm/sec)   p_kst 5.697000e-01   p_cons 8.624000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000193/ZC3H18.3_2930_10000_0.5697_0.8624_1.png
                gene_name: ZC3H18
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 52 percent done.
ZC3HAV1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.501285e-02	ci left: 2.063903e-01	ci right 2.225764e-01	k: 2144	n:10000
Cons ci ratio: 2.423247e-02	ci left: 7.146195e-01	ci right 7.322502e-01	k: 7235	n:10000
KS ci ratio: 1.509149e-01	ci left: 5.841227e-02	ci right 6.804410e-02	k: 631	n:10000
ZC3HAV1   10000 perm   2 sec   (6471 perm/sec)   p_kst 6.310000e-02   p_cons 7.235000e-01   p_joint 2.144000e-01

Joint ci ratio: 5.498154e-02	ci left: 1.970481e-01	ci right 2.082385e-01	k: 4052	n:20000
Cons ci ratio: 1.732595e-02	ci left: 7.127643e-01	ci right 7.252719e-01	k: 14381	n:20000
KS ci ratio: 1.068507e-01	ci left: 5.967148e-02	ci right 6.645624e-02	k: 1260	n:20000
ZC3HAV1   20000 perm   3 sec   (5812 perm/sec)   p_kst 6.300000e-02   p_cons 7.190500e-01   p_joint 2.026000e-01

Joint ci ratio: 3.420959e-02	ci left: 2.991955e-01	ci right 3.096424e-01	k: 9132	n:30000
Cons ci ratio: 1.407609e-02	ci left: 7.159539e-01	ci right 7.261366e-01	k: 21632	n:30000
KS ci ratio: 8.876887e-02	ci left: 5.831772e-02	ci right 6.376768e-02	k: 1830	n:30000
ZC3HAV1   30000 perm   5 sec   (5534 perm/sec)   p_kst 6.100000e-02   p_cons 7.210667e-01   p_joint 3.044000e-01

Outputting figure to mutsig2_images.part000000000193/ZC3HAV1.3_2765_30000_0.061_0.72107_0.3044.png
                gene_name: ZC3HAV1
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.061 
        ci_ks_bounds_left: 0.058 
       ci_ks_bounds_right: 0.064 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 55 percent done.
ZCCHC14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.106241e-02	ci left: 9.210038e-01	ci right 9.313463e-01	k: 9263	n:10000
KS ci ratio: 1.876412e-02	ci left: 8.058264e-01	ci right 8.211905e-01	k: 8136	n:10000
ZCCHC14   10000 perm   2 sec   (6603 perm/sec)   p_kst 8.136000e-01   p_cons 9.263000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000193/ZCCHC14.3_2902_10000_0.8136_0.9263_1.png
                gene_name: ZCCHC14
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 57 percent done.
ZCCHC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.645451e-02	ci left: 3.160206e-01	ci right 3.344813e-01	k: 3252	n:10000
Cons ci ratio: 1.291907e-01	ci left: 7.882909e-02	ci right 8.981448e-02	k: 842	n:10000
KS ci ratio: 3.571168e-02	ci left: 5.365801e-01	ci right 5.561928e-01	k: 5464	n:10000
ZCCHC2   10000 perm   2 sec   (6116 perm/sec)   p_kst 5.464000e-01   p_cons 8.420000e-02   p_joint 3.252000e-01

Joint ci ratio: 3.250347e-02	ci left: 4.141444e-01	ci right 4.278786e-01	k: 8420	n:20000
Cons ci ratio: 8.694855e-02	ci left: 8.822495e-02	ci right 9.629404e-02	k: 1844	n:20000
KS ci ratio: 2.509104e-02	ci left: 5.426729e-01	ci right 5.565127e-01	k: 10992	n:20000
ZCCHC2   20000 perm   4 sec   (5498 perm/sec)   p_kst 5.496000e-01   p_cons 9.220000e-02   p_joint 4.210000e-01

Outputting figure to mutsig2_images.part000000000193/ZCCHC2.3_3593_20000_0.5496_0.0922_0.421.png
                gene_name: ZCCHC2
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.092 
      ci_cons_bounds_left: 0.088 
     ci_cons_bounds_right: 0.096 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 59 percent done.
ZCCHC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.519609e-02	ci left: 5.437922e-01	ci right 5.633765e-01	k: 5536	n:10000
KS ci ratio: 2.931451e-02	ci left: 6.318096e-01	ci right 6.507081e-01	k: 6413	n:10000
ZCCHC5   10000 perm   1 sec   (7050 perm/sec)   p_kst 6.413000e-01   p_cons 5.536000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000193/ZCCHC5.3_1432_10000_0.6413_0.5536_1.png
                gene_name: ZCCHC5
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 61 percent done.
ZCCHC7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.159900e-03	ci left: 9.641510e-01	ci right 9.711731e-01	k: 9678	n:10000
Cons ci ratio: 2.514556e-03	ci left: 9.945571e-01	ci right 9.971408e-01	k: 9960	n:10000
KS ci ratio: 1.491369e-02	ci left: 8.669281e-01	ci right 8.800535e-01	k: 8736	n:10000
ZCCHC7   10000 perm   1 sec   (6933 perm/sec)   p_kst 8.736000e-01   p_cons 9.960000e-01   p_joint 9.678000e-01

Outputting figure to mutsig2_images.part000000000193/ZCCHC7.3_1664_10000_0.8736_0.996_0.9678.png
                gene_name: ZCCHC7
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 1.00 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 64 percent done.
ZCCHC8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.566060e-02	ci left: 8.554928e-01	ci right 8.690954e-01	k: 8624	n:10000
Cons ci ratio: 4.108126e-02	ci left: 4.666691e-01	ci right 4.863446e-01	k: 4765	n:10000
KS ci ratio: 2.940376e-02	ci left: 6.304019e-01	ci right 6.493165e-01	k: 6399	n:10000
ZCCHC8   10000 perm   1 sec   (6812 perm/sec)   p_kst 6.399000e-01   p_cons 4.765000e-01   p_joint 8.624000e-01

Outputting figure to mutsig2_images.part000000000193/ZCCHC8.3_2180_10000_0.6399_0.4765_0.8624.png
                gene_name: ZCCHC8
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 66 percent done.
ZBTB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.006293e-02	ci left: 2.299769e-01	ci right 2.467758e-01	k: 2383	n:10000
KS ci ratio: 8.703178e-03	ci left: 9.487722e-01	ci right 9.571614e-01	k: 9531	n:10000
ZBTB2   10000 perm   1 sec   (7431 perm/sec)   p_kst 9.531000e-01   p_cons 2.383000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000193/ZBTB2.2_1553_10000_0.9531_0.2383_1.png
                gene_name: ZBTB2
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
ZBTB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.218526e-02	ci left: 7.488743e-01	ci right 7.657756e-01	k: 7574	n:10000
KS ci ratio: 6.951078e-03	ci left: 9.660453e-01	ci right 9.728776e-01	k: 9696	n:10000
ZBTB3   10000 perm   1 sec   (7667 perm/sec)   p_kst 9.696000e-01   p_cons 7.574000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000193/ZBTB3.2_1733_10000_0.9696_0.7574_1.png
                gene_name: ZBTB3
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
ZBTB40
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.804305e-02	ci left: 8.176118e-01	ci right 8.325984e-01	k: 8252	n:10000
Cons ci ratio: 4.532749e-02	ci left: 4.180751e-01	ci right 4.375670e-01	k: 4278	n:10000
KS ci ratio: 1.296142e-02	ci left: 8.954920e-01	ci right 9.072730e-01	k: 9015	n:10000
ZBTB40   10000 perm   2 sec   (6412 perm/sec)   p_kst 9.015000e-01   p_cons 4.278000e-01   p_joint 8.252000e-01

Outputting figure to mutsig2_images.part000000000193/ZBTB40.2_3788_10000_0.9015_0.4278_0.8252.png
                gene_name: ZBTB40
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 73 percent done.
ZBTB7A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.935524e-02	ci left: 2.945961e-01	ci right 3.127184e-01	k: 3036	n:10000
Cons ci ratio: 6.656394e-02	ci left: 2.488526e-01	ci right 2.660889e-01	k: 2574	n:10000
KS ci ratio: 6.905540e-02	ci left: 2.352124e-01	ci right 2.521372e-01	k: 2436	n:10000
ZBTB7A   10000 perm   1 sec   (7283 perm/sec)   p_kst 2.436000e-01   p_cons 2.574000e-01   p_joint 3.036000e-01

Outputting figure to mutsig2_images.part000000000193/ZBTB7A.2_1763_10000_0.2436_0.2574_0.3036.png
                gene_name: ZBTB7A
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 75 percent done.
ZBTB8A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.139078e-02	ci left: 9.167762e-01	ci right 9.273764e-01	k: 9222	n:10000
Cons ci ratio: 6.046824e-02	ci left: 2.868652e-01	ci right 3.048539e-01	k: 2958	n:10000
KS ci ratio: 3.898308e-02	ci left: 4.928507e-01	ci right 5.125477e-01	k: 5027	n:10000
ZBTB8A   10000 perm   1 sec   (7640 perm/sec)   p_kst 5.027000e-01   p_cons 2.958000e-01   p_joint 9.222000e-01

Outputting figure to mutsig2_images.part000000000193/ZBTB8A.2_1338_10000_0.5027_0.2958_0.9222.png
                gene_name: ZBTB8A
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 77 percent done.
ZC3H12A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.656394e-02	ci left: 2.488526e-01	ci right 2.660889e-01	k: 2574	n:10000
Cons ci ratio: 7.058784e-02	ci left: 2.273104e-01	ci right 2.440439e-01	k: 2356	n:10000
KS ci ratio: 3.976252e-02	ci left: 4.829545e-01	ci right 5.026497e-01	k: 4928	n:10000
ZC3H12A   10000 perm   1 sec   (7362 perm/sec)   p_kst 4.928000e-01   p_cons 2.356000e-01   p_joint 2.574000e-01

Outputting figure to mutsig2_images.part000000000193/ZC3H12A.2_1820_10000_0.4928_0.2356_0.2574.png
                gene_name: ZC3H12A
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 80 percent done.
ZC3H4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.341025e-02	ci left: 7.283538e-01	ci right 7.457079e-01	k: 7371	n:10000
Cons ci ratio: 6.701956e-02	ci left: 2.462819e-01	ci right 2.634612e-01	k: 2548	n:10000
KS ci ratio: 3.126828e-02	ci left: 6.014639e-01	ci right 6.206713e-01	k: 6111	n:10000
ZC3H4   10000 perm   2 sec   (6276 perm/sec)   p_kst 6.111000e-01   p_cons 2.548000e-01   p_joint 7.371000e-01

Outputting figure to mutsig2_images.part000000000193/ZC3H4.2_3968_10000_0.6111_0.2548_0.7371.png
                gene_name: ZC3H4
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 82 percent done.
ZC3H6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.038389e-02	ci left: 9.294731e-01	ci right 9.392720e-01	k: 9345	n:10000
Cons ci ratio: 2.528286e-02	ci left: 6.971632e-01	ci right 7.151166e-01	k: 7062	n:10000
KS ci ratio: 2.516717e-02	ci left: 6.990796e-01	ci right 7.169991e-01	k: 7081	n:10000
ZC3H6   10000 perm   2 sec   (6495 perm/sec)   p_kst 7.081000e-01   p_cons 7.062000e-01   p_joint 9.345000e-01

Outputting figure to mutsig2_images.part000000000193/ZC3H6.2_3618_10000_0.7081_0.7062_0.9345.png
                gene_name: ZC3H6
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 84 percent done.
ZC3H7B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.957213e-02	ci left: 4.853532e-01	ci right 5.050496e-01	k: 4952	n:10000
KS ci ratio: 2.365790e-02	ci left: 7.242122e-01	ci right 7.416519e-01	k: 7330	n:10000
ZC3H7B   10000 perm   2 sec   (6621 perm/sec)   p_kst 7.330000e-01   p_cons 4.952000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000193/ZC3H7B.2_3022_10000_0.733_0.4952_1.png
                gene_name: ZC3H7B
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
ZCCHC13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.366775e-01	ci left: 7.078334e-02	ci right 8.126524e-02	k: 759	n:10000
Cons ci ratio: 1.365803e-01	ci left: 7.088017e-02	ci right 8.136835e-02	k: 760	n:10000
KS ci ratio: 5.168237e-02	ci left: 3.556540e-01	ci right 3.746246e-01	k: 3651	n:10000
ZCCHC13   10000 perm   1 sec   (8233 perm/sec)   p_kst 3.651000e-01   p_cons 7.600000e-02   p_joint 7.590000e-02

Joint ci ratio: 6.875588e-02	ci left: 1.349723e-01	ci right 1.446327e-01	k: 2795	n:20000
Cons ci ratio: 9.699335e-02	ci left: 7.182651e-02	ci right 7.919747e-02	k: 1509	n:20000
KS ci ratio: 3.634469e-02	ci left: 3.610121e-01	ci right 3.744264e-01	k: 7354	n:20000
ZCCHC13   20000 perm   3 sec   (7191 perm/sec)   p_kst 3.677000e-01   p_cons 7.545000e-02   p_joint 1.397500e-01

Outputting figure to mutsig2_images.part000000000193/ZCCHC13.2_505_20000_0.3677_0.07545_0.13975.png
                gene_name: ZCCHC13
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.075 
      ci_cons_bounds_left: 0.072 
     ci_cons_bounds_right: 0.079 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 89 percent done.
ZCCHC16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.073996e-02	ci left: 7.730669e-01	ci right 7.893690e-01	k: 7813	n:10000
Cons ci ratio: 4.392105e-02	ci left: 4.335311e-01	ci right 4.531019e-01	k: 4433	n:10000
KS ci ratio: 9.953727e-03	ci left: 9.346478e-01	ci right 9.440942e-01	k: 9395	n:10000
ZCCHC16   10000 perm   1 sec   (7921 perm/sec)   p_kst 9.395000e-01   p_cons 4.433000e-01   p_joint 7.813000e-01

Outputting figure to mutsig2_images.part000000000193/ZCCHC16.2_937_10000_0.9395_0.4433_0.7813.png
                gene_name: ZCCHC16
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 91 percent done.
ZCWPW2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.353627e-02	ci left: 2.668589e-01	ci right 2.844719e-01	k: 2756	n:10000
Cons ci ratio: 1.471006e-01	ci left: 6.140379e-02	ci right 7.125068e-02	k: 662	n:10000
KS ci ratio: 2.514556e-03	ci left: 9.945571e-01	ci right 9.971408e-01	k: 9960	n:10000
ZCWPW2   10000 perm   1 sec   (8038 perm/sec)   p_kst 9.960000e-01   p_cons 6.620000e-02   p_joint 2.756000e-01

Joint ci ratio: 9.213143e-02	ci left: 7.916341e-02	ci right 8.685833e-02	k: 1659	n:20000
Cons ci ratio: 1.056925e-01	ci left: 6.093909e-02	ci right 6.778824e-02	k: 1286	n:20000
KS ci ratio: 1.863384e-03	ci left: 9.945267e-01	ci right 9.964248e-01	k: 19911	n:20000
ZCWPW2   20000 perm   3 sec   (7100 perm/sec)   p_kst 9.955500e-01   p_cons 6.430000e-02   p_joint 8.295000e-02

Joint ci ratio: 7.322328e-02	ci left: 8.399812e-02	ci right 9.041542e-02	k: 2615	n:30000
Cons ci ratio: 8.607205e-02	ci left: 6.187661e-02	ci right 6.747473e-02	k: 1939	n:30000
KS ci ratio: 1.555110e-03	ci left: 9.944955e-01	ci right 9.960729e-01	k: 29860	n:30000
ZCWPW2   30000 perm   4 sec   (6733 perm/sec)   p_kst 9.953333e-01   p_cons 6.463333e-02   p_joint 8.716667e-02

Outputting figure to mutsig2_images.part000000000193/ZCWPW2.2_1103_30000_0.99533_0.064633_0.087167.png
                gene_name: ZCWPW2
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 1.00 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 1.00 
                   p_cons: 0.065 
      ci_cons_bounds_left: 0.062 
     ci_cons_bounds_right: 0.067 
                  p_joint: 0.087 
     ci_joint_bounds_left: 0.084 
    ci_joint_bounds_right: 0.090 

Current progress: 93 percent done.
ZDHHC11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.949518e-03	ci left: 9.817751e-01	ci right 9.867370e-01	k: 9844	n:10000
Cons ci ratio: 2.292739e-02	ci left: 7.364378e-01	ci right 7.536193e-01	k: 7451	n:10000
KS ci ratio: 4.491338e-02	ci left: 4.225613e-01	ci right 4.420781e-01	k: 4323	n:10000
ZDHHC11   10000 perm   1 sec   (7712 perm/sec)   p_kst 4.323000e-01   p_cons 7.451000e-01   p_joint 9.844000e-01

Outputting figure to mutsig2_images.part000000000193/ZDHHC11.2_1287_10000_0.4323_0.7451_0.9844.png
                gene_name: ZDHHC11
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 95 percent done.
ZDHHC14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.630765e-02	ci left: 8.453973e-01	ci right 8.593967e-01	k: 8525	n:10000
KS ci ratio: 1.619733e-02	ci left: 8.471301e-01	ci right 8.610629e-01	k: 8542	n:10000
ZDHHC14   10000 perm   1 sec   (7846 perm/sec)   p_kst 8.542000e-01   p_cons 8.525000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000193/ZDHHC14.2_1503_10000_0.8542_0.8525_1.png
                gene_name: ZDHHC14
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
ZDHHC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.735548e-03	ci left: 9.586940e-01	ci right 9.662336e-01	k: 9626	n:10000
Cons ci ratio: 1.146253e-01	ci left: 9.866755e-02	ci right 1.107638e-01	k: 1046	n:10000
KS ci ratio: 5.026381e-02	ci left: 3.685825e-01	ci right 3.876885e-01	k: 3781	n:10000
ZDHHC5   10000 perm   1 sec   (7145 perm/sec)   p_kst 3.781000e-01   p_cons 1.046000e-01   p_joint 9.626000e-01

Joint ci ratio: 1.808944e-02	ci left: 6.949030e-01	ci right 7.076385e-01	k: 14026	n:20000
Cons ci ratio: 7.976226e-02	ci left: 1.034359e-01	ci right 1.120785e-01	k: 2154	n:20000
KS ci ratio: 3.529362e-02	ci left: 3.747107e-01	ci right 3.882238e-01	k: 7629	n:20000
ZDHHC5   20000 perm   3 sec   (6327 perm/sec)   p_kst 3.814500e-01   p_cons 1.077000e-01   p_joint 7.013000e-01

Outputting figure to mutsig2_images.part000000000193/ZDHHC5.2_2192_20000_0.38145_0.1077_0.7013.png
                gene_name: ZDHHC5
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000193
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 193 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1552>
Subject: Job 8004707: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1552>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000194> was used as the working directory.
Started at Sun Nov 11 15:26:06 2012
Results reported at Sun Nov 11 19:48:23 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000194.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000194.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 194  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000194.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  16975.70 sec.
    Max Memory :      4806 MB
    Max Swap   :      7146 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
194
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 194
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 194: processing genes 17462 - 17551
Calculating significance of each gene.
Using projection method.
17462	ZDHHC6	6.791063e-01
17463	ZDHHC7	1
17464	ZDHHC8	9.234368e-01
17465	ZDHHC9	1.768063e-01
17466	ZEB1	1
17467	ZEB2	1.683071e-02
17468	ZER1	1
17469	ZFAND1	1.758261e-01
17470	ZFAND2A	1.709438e-01
17471	ZFAND2B	4.341305e-01
17472	ZFAND3	1
17473	ZFAND5	1
17474	ZFAND6	6.577920e-02
17475	ZFAT	1
17476	ZFC3H1	6.795614e-01
17477	ZFHX3	9.999996e-01
17478	ZFHX4	1
17479	ZFP1	8.087392e-01
17480	ZFP106	9.984569e-01
17481	ZFP112	6.405263e-01
17482	ZFP14	8.726785e-02
17483	ZFP161	5.643302e-01
17484	ZFP2	1
17485	ZFP28	5.774686e-01
17486	ZFP3	8.536732e-01
17487	ZFP30	2.142469e-01
17488	ZFP36	1
17489	ZFP36L1	2.041541e-01
17490	ZFP36L2	2.024541e-03
17491	ZFP37	3.209493e-03
17492	ZFP41	1
17493	ZFP42	2.954874e-05
17494	ZFP57	7.904213e-02
17495	ZFP64	1.020844e-01
17496	ZFP82	7.142515e-01
17497	ZFP90	7.987052e-01
17498	ZFP91	2.797094e-01
17499	ZFPL1	6.709145e-01
17500	ZFPM1	1
17501	ZFPM2	9.868454e-01
17502	ZFR	4.205582e-01
17503	ZFR2	2.292448e-01
17504	ZFX	8.964598e-01
17505	ZFY	7.698445e-01
17506	ZFYVE1	1
17507	ZFYVE16	9.450991e-01
17508	ZFYVE19	8.921634e-01
17509	ZFYVE20	7.448953e-01
17510	ZFYVE21	1
17511	ZFYVE26	9.968926e-01
17512	ZFYVE27	1
17513	ZFYVE28	1
17514	ZFYVE9	9.626343e-01
17515	ZG16B	1
17516	ZGLP1	4.464202e-01
17517	ZGPAT	5.192231e-01
17518	ZHX1	1
17519	ZHX2	1
17520	ZHX3	1
17521	ZIC1	6.560067e-05
17522	ZIC2	1
17523	ZIC3	5.485802e-01
17524	ZIC4	1
17525	ZIC5	3.754349e-01
17526	ZIK1	7.336731e-01
17527	ZIM2	6.084733e-03
17528	ZIM3	5.464372e-02
17529	ZKSCAN1	1
17530	ZKSCAN2	4.070707e-01
17531	ZKSCAN3	8.515333e-01
17532	ZKSCAN4	3.201789e-01
17533	ZKSCAN5	8.784337e-01
17534	ZMAT1	2.577372e-01
17535	ZMAT2	2.921963e-01
17536	ZMAT3	1
17537	ZMAT4	1.780803e-01
17538	ZMAT5	1
17539	ZMIZ1	6.102368e-01
17540	ZMIZ2	9.404583e-01
17541	ZMPSTE24	5.855950e-01
17542	ZMYM1	3.891172e-01
17543	ZMYM2	9.870970e-01
17544	ZMYM3	9.853765e-01
17545	ZMYM4	9.536632e-01
17546	ZMYM5	1.882279e-01
17547	ZMYM6	5.099733e-01
17548	ZMYND10	1
17549	ZMYND11	7.321690e-01
17550	ZMYND12	1.320017e-01
17551	ZMYND15	5.057951e-01
Done

Running MutSig 2:
Scatter job 194: processing genes 17462 - 17551
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ZFHX4
Processing conservation and coverage...
91% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.777941e-02	ci left: 3.059998e-01	ci right 3.243080e-01	k: 3151	n:10000
Cons ci ratio: 7.781489e-02	ci left: 1.944641e-01	ci right 2.103097e-01	k: 2023	n:10000
KS ci ratio: 4.681183e-02	ci left: 4.024296e-01	ci right 4.218216e-01	k: 4121	n:10000
ZFHX4   10000 perm   8 sec   (1324 perm/sec)   p_kst 4.121000e-01   p_cons 2.023000e-01   p_joint 3.151000e-01

Outputting figure to mutsig2_images.part000000000194/ZFHX4.86_10891_10000_0.4121_0.2023_0.3151.png
                gene_name: ZFHX4
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 2 percent done.
ZIC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.657893e-02	ci left: 8.411177e-01	ci right 8.552788e-01	k: 8483	n:10000
Cons ci ratio: 1.073529e-02	ci left: 9.251327e-01	ci right 9.352150e-01	k: 9303	n:10000
KS ci ratio: 2.073389e-02	ci left: 7.731682e-01	ci right 7.894676e-01	k: 7814	n:10000
ZIC1   10000 perm   2 sec   (4440 perm/sec)   p_kst 7.814000e-01   p_cons 9.303000e-01   p_joint 8.483000e-01

Outputting figure to mutsig2_images.part000000000194/ZIC1.20_1356_10000_0.7814_0.9303_0.8483.png
                gene_name: ZIC1
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 3 percent done.
ZEB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 6.151475e-02	ci left: 2.798308e-01	ci right 2.976924e-01	k: 2887	n:10000
KS ci ratio: 2.262761e+00	ci left: 2.422185e-05	ci right 7.222801e-04	k: 2	n:10000
ZEB2   10000 perm   2 sec   (4250 perm/sec)   p_kst 2.000000e-04   p_cons 2.887000e-01   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 4.358788e-02	ci left: 2.816310e-01	ci right 2.942307e-01	k: 5758	n:20000
KS ci ratio: 2.262987e+00	ci left: 1.211069e-05	ci right 3.611872e-04	k: 2	n:20000
ZEB2   20000 perm   5 sec   (3855 perm/sec)   p_kst 1.000000e-04   p_cons 2.879000e-01   p_joint 0

Joint ci ratio: 3.919869e+00	ci left: 0	ci right 1.229551e-04	k: 0	n:30000
Cons ci ratio: 3.537795e-02	ci left: 2.852339e-01	ci right 2.955401e-01	k: 8711	n:30000
KS ci ratio: 2.263062e+00	ci left: 8.073745e-06	ci right 2.408020e-04	k: 2	n:30000
ZEB2   30000 perm   8 sec   (3710 perm/sec)   p_kst 6.666667e-05   p_cons 2.903667e-01   p_joint 0

Joint ci ratio: 4.247264e-01	ci left: 1.675377e-03	ci right 2.599293e-03	k: 84	n:40000
Cons ci ratio: 3.073515e-02	ci left: 2.846354e-01	ci right 2.935453e-01	k: 11563	n:40000
KS ci ratio: 1.959878e+00	ci left: 1.546707e-05	ci right 2.191660e-04	k: 3	n:40000
ZEB2   40000 perm   11 sec   (3603 perm/sec)   p_kst 7.500000e-05   p_cons 2.890750e-01   p_joint 2.100000e-03

Joint ci ratio: 4.750417e-01	ci left: 1.038628e-03	ci right 1.701445e-03	k: 67	n:50000
Cons ci ratio: 2.740766e-02	ci left: 2.863436e-01	ci right 2.943207e-01	k: 14516	n:50000
KS ci ratio: 1.959902e+00	ci left: 1.237361e-05	ci right 1.753353e-04	k: 3	n:50000
ZEB2   50000 perm   14 sec   (3529 perm/sec)   p_kst 6.000000e-05   p_cons 2.903200e-01   p_joint 1.340000e-03

Joint ci ratio: 4.493662e-01	ci left: 9.833273e-04	ci right 1.566638e-03	k: 75	n:60000
Cons ci ratio: 2.509618e-02	ci left: 2.854413e-01	ci right 2.927125e-01	k: 17344	n:60000
KS ci ratio: 1.959918e+00	ci left: 1.031132e-05	ci right 1.461142e-04	k: 3	n:60000
ZEB2   60000 perm   17 sec   (3467 perm/sec)   p_kst 5.000000e-05   p_cons 2.890667e-01   p_joint 1.250000e-03

Joint ci ratio: 4.716765e-01	ci left: 7.544288e-04	ci right 1.231357e-03	k: 68	n:70000
Cons ci ratio: 2.326352e-02	ci left: 2.852023e-01	ci right 2.919295e-01	k: 20199	n:70000
KS ci ratio: 1.959930e+00	ci left: 8.838260e-06	ci right 1.252416e-04	k: 3	n:70000
ZEB2   70000 perm   21 sec   (3401 perm/sec)   p_kst 4.285714e-05   p_cons 2.885571e-01   p_joint 9.714286e-04

Joint ci ratio: 4.650090e-01	ci left: 6.821670e-04	ci right 1.105382e-03	k: 70	n:80000
Cons ci ratio: 2.182795e-02	ci left: 2.841659e-01	ci right 2.904495e-01	k: 22984	n:80000
KS ci ratio: 1.959939e+00	ci left: 7.733468e-06	ci right 1.095870e-04	k: 3	n:80000
ZEB2   80000 perm   24 sec   (3337 perm/sec)   p_kst 3.750000e-05   p_cons 2.873000e-01   p_joint 8.750000e-04

Joint ci ratio: 4.976662e-01	ci left: 5.184847e-04	ci right 8.705499e-04	k: 61	n:90000
Cons ci ratio: 2.058077e-02	ci left: 2.843229e-01	ci right 2.902464e-01	k: 25855	n:90000
KS ci ratio: 1.959946e+00	ci left: 6.874187e-06	ci right 9.741102e-05	k: 3	n:90000
ZEB2   90000 perm   27 sec   (3284 perm/sec)   p_kst 3.333333e-05   p_cons 2.872778e-01   p_joint 6.777778e-04

Joint ci ratio: 4.717474e-01	ci left: 5.280841e-04	ci right 8.619835e-04	k: 68	n:100000
Cons ci ratio: 1.951982e-02	ci left: 2.845764e-01	ci right 2.901960e-01	k: 28738	n:100000
KS ci ratio: 1.753025e+00	ci left: 1.089876e-05	ci right 1.024127e-04	k: 4	n:100000
ZEB2   100000 perm   31 sec   (3234 perm/sec)   p_kst 4.000000e-05   p_cons 2.873800e-01   p_joint 6.800000e-04

Joint ci ratio: 4.555354e-01	ci left: 5.202199e-04	ci right 8.343518e-04	k: 73	n:110000
Cons ci ratio: 1.860312e-02	ci left: 2.848899e-01	ci right 2.902486e-01	k: 31632	n:110000
KS ci ratio: 1.753029e+00	ci left: 9.907953e-06	ci right 9.310271e-05	k: 4	n:110000
ZEB2   110000 perm   34 sec   (3189 perm/sec)   p_kst 3.636364e-05   p_cons 2.875636e-01   p_joint 6.636364e-04

Joint ci ratio: 4.752331e-01	ci left: 4.327260e-04	ci right 7.090102e-04	k: 67	n:120000
Cons ci ratio: 1.783315e-02	ci left: 2.844998e-01	ci right 2.896272e-01	k: 34447	n:120000
KS ci ratio: 1.753033e+00	ci left: 9.082284e-06	ci right 8.534435e-05	k: 4	n:120000
ZEB2   120000 perm   38 sec   (3145 perm/sec)   p_kst 3.333333e-05   p_cons 2.870583e-01   p_joint 5.583333e-04

Joint ci ratio: 5.284588e-01	ci left: 3.120646e-04	ci right 5.419525e-04	k: 54	n:130000
Cons ci ratio: 1.713021e-02	ci left: 2.846800e-01	ci right 2.896064e-01	k: 37328	n:130000
KS ci ratio: 1.753037e+00	ci left: 8.383641e-06	ci right 7.877956e-05	k: 4	n:130000
ZEB2   130000 perm   42 sec   (3103 perm/sec)   p_kst 3.076923e-05   p_cons 2.871385e-01   p_joint 4.153846e-04

Joint ci ratio: 5.017934e-01	ci left: 3.270606e-04	ci right 5.516224e-04	k: 60	n:140000
Cons ci ratio: 1.650233e-02	ci left: 2.848878e-01	ci right 2.896353e-01	k: 40216	n:140000
KS ci ratio: 1.481578e+00	ci left: 1.572797e-05	ci right 9.327961e-05	k: 6	n:140000
ZEB2   140000 perm   46 sec   (3061 perm/sec)   p_kst 4.285714e-05   p_cons 2.872571e-01   p_joint 4.285714e-04

Joint ci ratio: 5.716993e-01	ci left: 2.245270e-04	ci right 4.090294e-04	k: 46	n:150000
Cons ci ratio: 1.595254e-02	ci left: 2.847182e-01	ci right 2.893033e-01	k: 43051	n:150000
KS ci ratio: 1.481581e+00	ci left: 1.467943e-05	ci right 8.706111e-05	k: 6	n:150000
ZEB2   150000 perm   50 sec   (3022 perm/sec)   p_kst 4.000000e-05   p_cons 2.870067e-01   p_joint 3.066667e-04

Joint ci ratio: 5.435162e-01	ci left: 2.373392e-04	ci right 4.190764e-04	k: 51	n:160000
Cons ci ratio: 1.544153e-02	ci left: 2.849089e-01	ci right 2.893488e-01	k: 45940	n:160000
KS ci ratio: 1.481584e+00	ci left: 1.376196e-05	ci right 8.161991e-05	k: 6	n:160000
ZEB2   160000 perm   54 sec   (2986 perm/sec)   p_kst 3.750000e-05   p_cons 2.871250e-01   p_joint 3.187500e-04

Joint ci ratio: 5.842800e-01	ci left: 1.880677e-04	ci right 3.474431e-04	k: 44	n:170000
Cons ci ratio: 1.631830e-02	ci left: 2.513513e-01	ci right 2.554925e-01	k: 43081	n:170000
KS ci ratio: 1.481586e+00	ci left: 1.295243e-05	ci right 7.681884e-05	k: 6	n:170000
ZEB2   170000 perm   58 sec   (2949 perm/sec)   p_kst 3.529412e-05   p_cons 2.534176e-01   p_joint 2.588235e-04

Joint ci ratio: 5.599222e-01	ci left: 1.966253e-04	ci right 3.535460e-04	k: 48	n:180000
Cons ci ratio: 1.585743e-02	ci left: 2.514362e-01	ci right 2.554607e-01	k: 45620	n:180000
KS ci ratio: 1.481588e+00	ci left: 1.223284e-05	ci right 7.255121e-05	k: 6	n:180000
ZEB2   180000 perm   62 sec   (2911 perm/sec)   p_kst 3.333333e-05   p_cons 2.534444e-01   p_joint 2.666667e-04

Joint ci ratio: 5.542973e-01	ci left: 1.907978e-04	ci right 3.409364e-04	k: 49	n:190000
Cons ci ratio: 1.541230e-02	ci left: 2.520333e-01	ci right 2.559531e-01	k: 48258	n:190000
KS ci ratio: 1.385896e+00	ci left: 1.481256e-05	ci right 7.590733e-05	k: 7	n:190000
ZEB2   190000 perm   66 sec   (2873 perm/sec)   p_kst 3.684211e-05   p_cons 2.539895e-01   p_joint 2.578947e-04

Joint ci ratio: 5.908957e-01	ci left: 1.556008e-04	ci right 2.895928e-04	k: 43	n:200000
Cons ci ratio: 1.502244e-02	ci left: 2.520734e-01	ci right 2.558937e-01	k: 50796	n:200000
KS ci ratio: 1.385898e+00	ci left: 1.407193e-05	ci right 7.211204e-05	k: 7	n:200000
ZEB2   200000 perm   70 sec   (2838 perm/sec)   p_kst 3.500000e-05   p_cons 2.539800e-01   p_joint 2.150000e-04

Joint ci ratio: 5.657373e-01	ci left: 1.644513e-04	ci right 2.976082e-04	k: 47	n:210000
Cons ci ratio: 1.465301e-02	ci left: 2.523103e-01	ci right 2.560394e-01	k: 53376	n:210000
KS ci ratio: 1.385900e+00	ci left: 1.340183e-05	ci right 6.867819e-05	k: 7	n:210000
ZEB2   210000 perm   75 sec   (2805 perm/sec)   p_kst 3.333333e-05   p_cons 2.541714e-01   p_joint 2.238095e-04

Joint ci ratio: 5.657403e-01	ci left: 1.569761e-04	ci right 2.840811e-04	k: 47	n:220000
Cons ci ratio: 1.433463e-02	ci left: 2.518646e-01	ci right 2.555055e-01	k: 55810	n:220000
KS ci ratio: 1.385901e+00	ci left: 1.279265e-05	ci right 6.555651e-05	k: 7	n:220000
ZEB2   220000 perm   79 sec   (2772 perm/sec)   p_kst 3.181818e-05   p_cons 2.536818e-01   p_joint 2.136364e-04

Joint ci ratio: 5.543103e-01	ci left: 1.576148e-04	ci right 2.816451e-04	k: 49	n:230000
Cons ci ratio: 1.402516e-02	ci left: 2.517535e-01	ci right 2.553136e-01	k: 58312	n:230000
KS ci ratio: 1.385902e+00	ci left: 1.223645e-05	ci right 6.270627e-05	k: 7	n:230000
ZEB2   230000 perm   84 sec   (2737 perm/sec)   p_kst 3.043478e-05   p_cons 2.535304e-01   p_joint 2.130435e-04

Joint ci ratio: 5.435462e-01	ci left: 1.582242e-04	ci right 2.793889e-04	k: 51	n:240000
Cons ci ratio: 1.372583e-02	ci left: 2.519019e-01	ci right 2.553874e-01	k: 60874	n:240000
KS ci ratio: 1.306639e+00	ci left: 1.439107e-05	ci right 6.567889e-05	k: 8	n:240000
ZEB2   240000 perm   89 sec   (2704 perm/sec)   p_kst 3.333333e-05   p_cons 2.536417e-01   p_joint 2.125000e-04

Joint ci ratio: 5.383953e-01	ci left: 1.553481e-04	ci right 2.727555e-04	k: 52	n:250000
Cons ci ratio: 1.343311e-02	ci left: 2.523704e-01	ci right 2.557873e-01	k: 63519	n:250000
KS ci ratio: 1.306641e+00	ci left: 1.381543e-05	ci right 6.305178e-05	k: 8	n:250000
ZEB2   250000 perm   94 sec   (2673 perm/sec)   p_kst 3.200000e-05   p_cons 2.540760e-01   p_joint 2.080000e-04

Joint ci ratio: 5.237746e-01	ci left: 1.593636e-04	ci right 2.753376e-04	k: 55	n:260000
Cons ci ratio: 1.316728e-02	ci left: 2.525464e-01	ci right 2.558976e-01	k: 66097	n:260000
KS ci ratio: 1.306642e+00	ci left: 1.328406e-05	ci right 6.062675e-05	k: 8	n:260000
ZEB2   260000 perm   98 sec   (2644 perm/sec)   p_kst 3.076923e-05   p_cons 2.542192e-01   p_joint 2.115385e-04

Joint ci ratio: 5.237767e-01	ci left: 1.534611e-04	ci right 2.651402e-04	k: 55	n:270000
Cons ci ratio: 1.292546e-02	ci left: 2.524513e-01	ci right 2.557392e-01	k: 68605	n:270000
KS ci ratio: 1.306642e+00	ci left: 1.279206e-05	ci right 5.838134e-05	k: 8	n:270000
ZEB2   270000 perm   103 sec   (2615 perm/sec)   p_kst 2.962963e-05   p_cons 2.540926e-01   p_joint 2.037037e-04

Joint ci ratio: 5.146670e-01	ci left: 1.541865e-04	ci right 2.637425e-04	k: 57	n:280000
Cons ci ratio: 1.270272e-02	ci left: 2.521782e-01	ci right 2.554055e-01	k: 71061	n:280000
KS ci ratio: 1.306643e+00	ci left: 1.233519e-05	ci right 5.629632e-05	k: 8	n:280000
ZEB2   280000 perm   108 sec   (2586 perm/sec)   p_kst 2.857143e-05   p_cons 2.537893e-01   p_joint 2.035714e-04

Joint ci ratio: 5.191648e-01	ci left: 1.458715e-04	ci right 2.507537e-04	k: 56	n:290000
Cons ci ratio: 1.248849e-02	ci left: 2.520035e-01	ci right 2.551738e-01	k: 73540	n:290000
KS ci ratio: 1.306644e+00	ci left: 1.190984e-05	ci right 5.435510e-05	k: 8	n:290000
ZEB2   290000 perm   113 sec   (2559 perm/sec)   p_kst 2.758621e-05   p_cons 2.535862e-01   p_joint 1.931034e-04

Joint ci ratio: 5.237823e-01	ci left: 1.381146e-04	ci right 2.386269e-04	k: 55	n:300000
Cons ci ratio: 1.228192e-02	ci left: 2.519274e-01	ci right 2.550440e-01	k: 76045	n:300000
KS ci ratio: 1.306645e+00	ci left: 1.151284e-05	ci right 5.254328e-05	k: 8	n:300000
ZEB2   300000 perm   119 sec   (2531 perm/sec)   p_kst 2.666667e-05   p_cons 2.534833e-01   p_joint 1.833333e-04

Joint ci ratio: 5.237839e-01	ci left: 1.336592e-04	ci right 2.309295e-04	k: 55	n:310000
Cons ci ratio: 1.209456e-02	ci left: 2.515669e-01	ci right 2.546312e-01	k: 78460	n:310000
KS ci ratio: 1.239591e+00	ci left: 1.327548e-05	ci right 5.511155e-05	k: 9	n:310000
ZEB2   310000 perm   124 sec   (2503 perm/sec)   p_kst 2.903226e-05   p_cons 2.530968e-01   p_joint 1.774194e-04

Joint ci ratio: 5.191696e-01	ci left: 1.321957e-04	ci right 2.272461e-04	k: 56	n:320000
Cons ci ratio: 1.191137e-02	ci left: 2.513603e-01	ci right 2.543754e-01	k: 80917	n:320000
KS ci ratio: 1.239592e+00	ci left: 1.286062e-05	ci right 5.338934e-05	k: 9	n:320000
ZEB2   320000 perm   129 sec   (2477 perm/sec)   p_kst 2.812500e-05   p_cons 2.528656e-01   p_joint 1.750000e-04

Joint ci ratio: 5.146752e-01	ci left: 1.308245e-04	ci right 2.237825e-04	k: 57	n:330000
Cons ci ratio: 1.173108e-02	ci left: 2.513329e-01	ci right 2.543017e-01	k: 83429	n:330000
KS ci ratio: 1.239592e+00	ci left: 1.247090e-05	ci right 5.177150e-05	k: 9	n:330000
ZEB2   330000 perm   135 sec   (2451 perm/sec)   p_kst 2.727273e-05   p_cons 2.528152e-01   p_joint 1.727273e-04

Joint ci ratio: 5.146766e-01	ci left: 1.269766e-04	ci right 2.172008e-04	k: 57	n:340000
Cons ci ratio: 1.155648e-02	ci left: 2.513809e-01	ci right 2.543057e-01	k: 85966	n:340000
KS ci ratio: 1.239593e+00	ci left: 1.210411e-05	ci right 5.024882e-05	k: 9	n:340000
ZEB2   340000 perm   141 sec   (2419 perm/sec)   p_kst 2.647059e-05   p_cons 2.528412e-01   p_joint 1.676471e-04

Joint ci ratio: 5.384119e-01	ci left: 1.109622e-04	ci right 1.948272e-04	k: 52	n:350000
Cons ci ratio: 1.139359e-02	ci left: 2.512895e-01	ci right 2.541718e-01	k: 88455	n:350000
KS ci ratio: 1.181904e+00	ci left: 1.370119e-05	ci right 5.254324e-05	k: 10	n:350000
ZEB2   350000 perm   147 sec   (2389 perm/sec)   p_kst 2.857143e-05   p_cons 2.527286e-01   p_joint 1.485714e-04

Joint ci ratio: 4.276566e-01	ci left: 1.836403e-04	ci right 2.858004e-04	k: 83	n:360000
Cons ci ratio: 1.123566e-02	ci left: 2.512617e-01	ci right 2.541034e-01	k: 90965	n:360000
KS ci ratio: 1.047642e+00	ci left: 1.922778e-05	ci right 6.175031e-05	k: 13	n:360000
ZEB2   360000 perm   152 sec   (2365 perm/sec)   p_kst 3.611111e-05   p_cons 2.526806e-01   p_joint 2.305556e-04

Joint ci ratio: 4.276579e-01	ci left: 1.786769e-04	ci right 2.780763e-04	k: 83	n:370000
Cons ci ratio: 1.107976e-02	ci left: 2.513840e-01	ci right 2.541874e-01	k: 93530	n:370000
KS ci ratio: 1.012118e+00	ci left: 2.068645e-05	ci right 6.348465e-05	k: 14	n:370000
ZEB2   370000 perm   158 sec   (2342 perm/sec)   p_kst 3.783784e-05   p_cons 2.527838e-01   p_joint 2.243243e-04

Joint ci ratio: 4.276592e-01	ci left: 1.739748e-04	ci right 2.707587e-04	k: 83	n:380000
Cons ci ratio: 1.093459e-02	ci left: 2.513478e-01	ci right 2.541139e-01	k: 96037	n:380000
KS ci ratio: 9.799781e-01	ci left: 2.209328e-05	ci right 6.510500e-05	k: 15	n:380000
ZEB2   380000 perm   164 sec   (2318 perm/sec)   p_kst 3.947368e-05   p_cons 2.527289e-01   p_joint 2.184211e-04

Joint ci ratio: 4.328455e-01	ci left: 1.649410e-04	ci right 2.581361e-04	k: 81	n:390000
Cons ci ratio: 1.079330e-02	ci left: 2.513725e-01	ci right 2.541029e-01	k: 98567	n:390000
KS ci ratio: 9.507177e-01	ci left: 2.344987e-05	ci right 6.662222e-05	k: 16	n:390000
ZEB2   390000 perm   170 sec   (2296 perm/sec)   p_kst 4.102564e-05   p_cons 2.527359e-01   p_joint 2.076923e-04

Joint ci ratio: 4.276616e-01	ci left: 1.652759e-04	ci right 2.572211e-04	k: 83	n:400000
Cons ci ratio: 1.065826e-02	ci left: 2.513638e-01	ci right 2.540597e-01	k: 101084	n:400000
KS ci ratio: 9.507183e-01	ci left: 2.286362e-05	ci right 6.495668e-05	k: 16	n:400000
ZEB2   400000 perm   176 sec   (2274 perm/sec)   p_kst 4.000000e-05   p_cons 2.527100e-01   p_joint 2.075000e-04

Joint ci ratio: 4.226596e-01	ci left: 1.656008e-04	ci right 2.563445e-04	k: 85	n:410000
Cons ci ratio: 1.052362e-02	ci left: 2.515189e-01	ci right 2.541822e-01	k: 103668	n:410000
KS ci ratio: 9.507188e-01	ci left: 2.230597e-05	ci right 6.337239e-05	k: 16	n:410000
ZEB2   410000 perm   182 sec   (2250 perm/sec)   p_kst 3.902439e-05   p_cons 2.528488e-01   p_joint 2.073171e-04

Joint ci ratio: 4.226607e-01	ci left: 1.616578e-04	ci right 2.502412e-04	k: 85	n:420000
Cons ci ratio: 1.039755e-02	ci left: 2.515360e-01	ci right 2.541674e-01	k: 106197	n:420000
KS ci ratio: 9.239320e-01	ci left: 2.357904e-05	ci right 6.480551e-05	k: 17	n:420000
ZEB2   420000 perm   189 sec   (2224 perm/sec)   p_kst 4.047619e-05   p_cons 2.528500e-01   p_joint 2.023810e-04

Joint ci ratio: 4.226617e-01	ci left: 1.578983e-04	ci right 2.444218e-04	k: 85	n:430000
Cons ci ratio: 1.027787e-02	ci left: 2.514806e-01	ci right 2.540809e-01	k: 108695	n:430000
KS ci ratio: 9.239324e-01	ci left: 2.303069e-05	ci right 6.329843e-05	k: 17	n:430000
ZEB2   430000 perm   195 sec   (2200 perm/sec)   p_kst 3.953488e-05   p_cons 2.527791e-01   p_joint 1.976744e-04

Joint ci ratio: 4.556519e-01	ci left: 1.300484e-04	ci right 2.086013e-04	k: 73	n:440000
Cons ci ratio: 1.016271e-02	ci left: 2.514097e-01	ci right 2.539800e-01	k: 111185	n:440000
KS ci ratio: 9.239329e-01	ci left: 2.250726e-05	ci right 6.185984e-05	k: 17	n:440000
ZEB2   440000 perm   202 sec   (2178 perm/sec)   p_kst 3.863636e-05   p_cons 2.526932e-01   p_joint 1.659091e-04

Joint ci ratio: 4.438136e-01	ci left: 1.350405e-04	ci right 2.138550e-04	k: 77	n:450000
Cons ci ratio: 1.005016e-02	ci left: 2.513864e-01	ci right 2.539279e-01	k: 113695	n:450000
KS ci ratio: 9.239334e-01	ci left: 2.200710e-05	ci right 6.048520e-05	k: 17	n:450000
ZEB2   450000 perm   209 sec   (2158 perm/sec)   p_kst 3.777778e-05   p_cons 2.526556e-01   p_joint 1.711111e-04

Joint ci ratio: 4.438145e-01	ci left: 1.321048e-04	ci right 2.092060e-04	k: 77	n:460000
Cons ci ratio: 9.940240e-03	ci left: 2.514034e-01	ci right 2.539171e-01	k: 116223	n:460000
KS ci ratio: 9.239338e-01	ci left: 2.152868e-05	ci right 5.917031e-05	k: 17	n:460000
ZEB2   460000 perm   215 sec   (2139 perm/sec)   p_kst 3.695652e-05   p_cons 2.526587e-01   p_joint 1.673913e-04

Joint ci ratio: 4.409969e-01	ci left: 1.311846e-04	ci right 2.071181e-04	k: 78	n:470000
Cons ci ratio: 9.837616e-03	ci left: 2.512754e-01	ci right 2.537617e-01	k: 118683	n:470000
KS ci ratio: 9.239342e-01	ci left: 2.107062e-05	ci right 5.791138e-05	k: 17	n:470000
ZEB2   470000 perm   222 sec   (2119 perm/sec)   p_kst 3.617021e-05   p_cons 2.525170e-01   p_joint 1.659574e-04

Joint ci ratio: 4.355184e-01	ci left: 1.321584e-04	ci right 2.074269e-04	k: 80	n:480000
Cons ci ratio: 9.736277e-03	ci left: 2.512236e-01	ci right 2.536836e-01	k: 121177	n:480000
KS ci ratio: 8.765195e-01	ci left: 2.383192e-05	ci right 6.181359e-05	k: 19	n:480000
ZEB2   480000 perm   228 sec   (2101 perm/sec)   p_kst 3.958333e-05   p_cons 2.524521e-01   p_joint 1.666667e-04

Joint ci ratio: 4.355191e-01	ci left: 1.294613e-04	ci right 2.031937e-04	k: 80	n:490000
Cons ci ratio: 9.636757e-03	ci left: 2.512229e-01	ci right 2.536576e-01	k: 123695	n:490000
KS ci ratio: 8.765199e-01	ci left: 2.334555e-05	ci right 6.055210e-05	k: 19	n:490000
ZEB2   490000 perm   235 sec   (2084 perm/sec)   p_kst 3.877551e-05   p_cons 2.524388e-01   p_joint 1.632653e-04

Joint ci ratio: 4.556566e-01	ci left: 1.144424e-04	ci right 1.835696e-04	k: 73	n:500000
Cons ci ratio: 9.538659e-03	ci left: 2.512843e-01	ci right 2.536946e-01	k: 126244	n:500000
KS ci ratio: 8.765202e-01	ci left: 2.287863e-05	ci right 5.934107e-05	k: 19	n:500000
ZEB2   500000 perm   242 sec   (2067 perm/sec)   p_kst 3.800000e-05   p_cons 2.524880e-01   p_joint 1.460000e-04

Joint ci ratio: 4.496209e-01	ci left: 1.156728e-04	ci right 1.843361e-04	k: 75	n:510000
Cons ci ratio: 9.441389e-03	ci left: 2.514275e-01	ci right 2.538145e-01	k: 128836	n:510000
KS ci ratio: 8.765206e-01	ci left: 2.243003e-05	ci right 5.817754e-05	k: 19	n:510000
ZEB2   510000 perm   249 sec   (2049 perm/sec)   p_kst 3.725490e-05   p_cons 2.526196e-01   p_joint 1.470588e-04

Joint ci ratio: 4.496215e-01	ci left: 1.134483e-04	ci right 1.807912e-04	k: 75	n:520000
Cons ci ratio: 9.347796e-03	ci left: 2.515347e-01	ci right 2.538989e-01	k: 131412	n:520000
KS ci ratio: 8.765209e-01	ci left: 2.199868e-05	ci right 5.705875e-05	k: 19	n:520000
ZEB2   520000 perm   256 sec   (2031 perm/sec)   p_kst 3.653846e-05   p_cons 2.527154e-01   p_joint 1.442308e-04

Joint ci ratio: 4.466926e-01	ci left: 1.129815e-04	ci right 1.794785e-04	k: 76	n:530000
Cons ci ratio: 9.258087e-03	ci left: 2.515908e-01	ci right 2.539327e-01	k: 133963	n:530000
KS ci ratio: 8.765213e-01	ci left: 2.158361e-05	ci right 5.598218e-05	k: 19	n:530000
ZEB2   530000 perm   263 sec   (2012 perm/sec)   p_kst 3.584906e-05   p_cons 2.527604e-01   p_joint 1.433962e-04

Joint ci ratio: 4.466932e-01	ci left: 1.108892e-04	ci right 1.761549e-04	k: 76	n:540000
Cons ci ratio: 9.174781e-03	ci left: 2.514859e-01	ci right 2.538057e-01	k: 136428	n:540000
KS ci ratio: 8.765216e-01	ci left: 2.118391e-05	ci right 5.494548e-05	k: 19	n:540000
ZEB2   540000 perm   271 sec   (1993 perm/sec)   p_kst 3.518519e-05   p_cons 2.526444e-01   p_joint 1.407407e-04

Joint ci ratio: 4.410024e-01	ci left: 1.121030e-04	ci right 1.769924e-04	k: 78	n:550000
Cons ci ratio: 9.089611e-03	ci left: 2.515537e-01	ci right 2.538525e-01	k: 138986	n:550000
KS ci ratio: 8.553970e-01	ci left: 2.221199e-05	ci right 5.616013e-05	k: 20	n:550000
ZEB2   550000 perm   278 sec   (1976 perm/sec)   p_kst 3.636364e-05   p_cons 2.527018e-01   p_joint 1.418182e-04

Joint ci ratio: 4.328595e-01	ci left: 1.148689e-04	ci right 1.797747e-04	k: 81	n:560000
Cons ci ratio: 9.008260e-03	ci left: 2.515569e-01	ci right 2.538350e-01	k: 141509	n:560000
KS ci ratio: 8.357296e-01	ci left: 2.321324e-05	ci right 5.732217e-05	k: 21	n:560000
ZEB2   560000 perm   286 sec   (1959 perm/sec)   p_kst 3.750000e-05   p_cons 2.526946e-01   p_joint 1.446429e-04

Joint ci ratio: 4.587715e-01	ci left: 9.883560e-05	ci right 1.590712e-04	k: 72	n:570000
Cons ci ratio: 8.931420e-03	ci left: 2.514601e-01	ci right 2.537178e-01	k: 143975	n:570000
KS ci ratio: 8.357299e-01	ci left: 2.280598e-05	ci right 5.631652e-05	k: 21	n:570000
ZEB2   570000 perm   293 sec   (1942 perm/sec)   p_kst 3.684211e-05   p_cons 2.525877e-01   p_joint 1.263158e-04

Joint ci ratio: 4.685009e-01	ci left: 9.256342e-05	ci right 1.505561e-04	k: 69	n:580000
Cons ci ratio: 8.854894e-03	ci left: 2.514357e-01	ci right 2.536737e-01	k: 146481	n:580000
KS ci ratio: 8.357302e-01	ci left: 2.241277e-05	ci right 5.534556e-05	k: 21	n:580000
ZEB2   580000 perm   301 sec   (1927 perm/sec)   p_kst 3.620690e-05   p_cons 2.525534e-01   p_joint 1.189655e-04

Joint ci ratio: 4.685014e-01	ci left: 9.099453e-05	ci right 1.480043e-04	k: 69	n:590000
Cons ci ratio: 8.779515e-03	ci left: 2.514460e-01	ci right 2.536649e-01	k: 149007	n:590000
KS ci ratio: 8.357305e-01	ci left: 2.203290e-05	ci right 5.440751e-05	k: 21	n:590000
ZEB2   590000 perm   309 sec   (1912 perm/sec)   p_kst 3.559322e-05   p_cons 2.525542e-01   p_joint 1.169492e-04

Joint ci ratio: 4.685019e-01	ci left: 8.947793e-05	ci right 1.455376e-04	k: 69	n:600000
Cons ci ratio: 8.704337e-03	ci left: 2.515292e-01	ci right 2.537298e-01	k: 151577	n:600000
KS ci ratio: 8.357308e-01	ci left: 2.166568e-05	ci right 5.350072e-05	k: 21	n:600000
ZEB2   600000 perm   316 sec   (1897 perm/sec)   p_kst 3.500000e-05   p_cons 2.526283e-01   p_joint 1.150000e-04

Joint ci ratio: 4.651910e-01	ci left: 8.945751e-05	ci right 1.449827e-04	k: 70	n:610000
Cons ci ratio: 8.636906e-03	ci left: 2.513545e-01	ci right 2.535364e-01	k: 153991	n:610000
KS ci ratio: 8.357311e-01	ci left: 2.131050e-05	ci right 5.262367e-05	k: 21	n:610000
ZEB2   610000 perm   324 sec   (1882 perm/sec)   p_kst 3.442623e-05   p_cons 2.524443e-01   p_joint 1.147541e-04

Joint ci ratio: 4.587739e-01	ci left: 9.086489e-05	ci right 1.462431e-04	k: 72	n:620000
Cons ci ratio: 8.568342e-03	ci left: 2.513030e-01	ci right 2.534671e-01	k: 156478	n:620000
KS ci ratio: 8.357313e-01	ci left: 2.096678e-05	ci right 5.177491e-05	k: 21	n:620000
ZEB2   620000 perm   332 sec   (1867 perm/sec)   p_kst 3.387097e-05   p_cons 2.523839e-01   p_joint 1.161290e-04

Joint ci ratio: 4.438248e-01	ci left: 9.645703e-05	ci right 1.527545e-04	k: 77	n:630000
Cons ci ratio: 8.501600e-03	ci left: 2.512437e-01	ci right 2.533903e-01	k: 158959	n:630000
KS ci ratio: 8.173609e-01	ci left: 2.188470e-05	ci right 5.286979e-05	k: 22	n:630000
ZEB2   630000 perm   340 sec   (1853 perm/sec)   p_kst 3.492063e-05   p_cons 2.523159e-01   p_joint 1.222222e-04

Joint ci ratio: 4.382416e-01	ci left: 9.772781e-05	ci right 1.538376e-04	k: 79	n:640000
Cons ci ratio: 8.436428e-03	ci left: 2.511848e-01	ci right 2.533144e-01	k: 161439	n:640000
KS ci ratio: 8.173612e-01	ci left: 2.154275e-05	ci right 5.204370e-05	k: 22	n:640000
ZEB2   640000 perm   348 sec   (1838 perm/sec)   p_kst 3.437500e-05   p_cons 2.522484e-01   p_joint 1.234375e-04

Joint ci ratio: 4.382420e-01	ci left: 9.622429e-05	ci right 1.514709e-04	k: 79	n:650000
Cons ci ratio: 8.370376e-03	ci left: 2.512337e-01	ci right 2.533470e-01	k: 163988	n:650000
KS ci ratio: 8.173614e-01	ci left: 2.121132e-05	ci right 5.124304e-05	k: 22	n:650000
ZEB2   650000 perm   356 sec   (1824 perm/sec)   p_kst 3.384615e-05   p_cons 2.522892e-01   p_joint 1.215385e-04

Joint ci ratio: 4.382424e-01	ci left: 9.476633e-05	ci right 1.491759e-04	k: 79	n:660000
Cons ci ratio: 8.305285e-03	ci left: 2.513070e-01	ci right 2.534043e-01	k: 166554	n:660000
KS ci ratio: 8.173616e-01	ci left: 2.088994e-05	ci right 5.046663e-05	k: 22	n:660000
ZEB2   660000 perm   365 sec   (1809 perm/sec)   p_kst 3.333333e-05   p_cons 2.523545e-01   p_joint 1.196970e-04

Joint ci ratio: 4.382428e-01	ci left: 9.335189e-05	ci right 1.469495e-04	k: 79	n:670000
Cons ci ratio: 8.242341e-03	ci left: 2.513483e-01	ci right 2.534300e-01	k: 169100	n:670000
KS ci ratio: 8.173619e-01	ci left: 2.057814e-05	ci right 4.971341e-05	k: 22	n:670000
ZEB2   670000 perm   373 sec   (1796 perm/sec)   p_kst 3.283582e-05   p_cons 2.523881e-01   p_joint 1.179104e-04

Joint ci ratio: 4.382432e-01	ci left: 9.197905e-05	ci right 1.447885e-04	k: 79	n:680000
Cons ci ratio: 8.184378e-03	ci left: 2.512239e-01	ci right 2.532899e-01	k: 171534	n:680000
KS ci ratio: 8.173621e-01	ci left: 2.027552e-05	ci right 4.898233e-05	k: 22	n:680000
ZEB2   680000 perm   381 sec   (1783 perm/sec)   p_kst 3.235294e-05   p_cons 2.522559e-01   p_joint 1.161765e-04

Joint ci ratio: 4.355297e-01	ci left: 9.193586e-05	ci right 1.442978e-04	k: 80	n:690000
Cons ci ratio: 8.123936e-03	ci left: 2.512741e-01	ci right 2.533251e-01	k: 174086	n:690000
KS ci ratio: 8.173623e-01	ci left: 1.998167e-05	ci right 4.827245e-05	k: 22	n:690000
ZEB2   690000 perm   390 sec   (1770 perm/sec)   p_kst 3.188406e-05   p_cons 2.522986e-01   p_joint 1.159420e-04

Joint ci ratio: 4.438276e-01	ci left: 8.681122e-05	ci right 1.374792e-04	k: 77	n:700000
Cons ci ratio: 8.066249e-03	ci left: 2.512557e-01	ci right 2.532920e-01	k: 176591	n:700000
KS ci ratio: 8.173625e-01	ci left: 1.969622e-05	ci right 4.758285e-05	k: 22	n:700000
ZEB2   700000 perm   399 sec   (1757 perm/sec)   p_kst 3.142857e-05   p_cons 2.522729e-01   p_joint 1.100000e-04

Joint ci ratio: 4.410096e-01	ci left: 8.684004e-05	ci right 1.371073e-04	k: 78	n:710000
Cons ci ratio: 8.010790e-03	ci left: 2.511902e-01	ci right 2.532119e-01	k: 179062	n:710000
KS ci ratio: 8.173627e-01	ci left: 1.941881e-05	ci right 4.691267e-05	k: 22	n:710000
ZEB2   710000 perm   407 sec   (1744 perm/sec)   p_kst 3.098592e-05   p_cons 2.522000e-01   p_joint 1.098592e-04

Joint ci ratio: 4.410100e-01	ci left: 8.563392e-05	ci right 1.352031e-04	k: 78	n:720000
Cons ci ratio: 7.957925e-03	ci left: 2.510571e-01	ci right 2.530643e-01	k: 181483	n:720000
KS ci ratio: 8.173629e-01	ci left: 1.914910e-05	ci right 4.626112e-05	k: 22	n:720000
ZEB2   720000 perm   416 sec   (1732 perm/sec)   p_kst 3.055556e-05   p_cons 2.520597e-01   p_joint 1.083333e-04

Joint ci ratio: 4.382450e-01	ci left: 8.567905e-05	ci right 1.348716e-04	k: 79	n:730000
Cons ci ratio: 7.904455e-03	ci left: 2.510057e-01	ci right 2.529990e-01	k: 183961	n:730000
KS ci ratio: 8.173631e-01	ci left: 1.888678e-05	ci right 4.562741e-05	k: 22	n:730000
ZEB2   730000 perm   425 sec   (1719 perm/sec)   p_kst 3.013699e-05   p_cons 2.520014e-01   p_joint 1.082192e-04

Joint ci ratio: 4.328673e-01	ci left: 8.692753e-05	ci right 1.360463e-04	k: 81	n:740000
Cons ci ratio: 7.852019e-03	ci left: 2.509571e-01	ci right 2.529367e-01	k: 186440	n:740000
KS ci ratio: 8.173632e-01	ci left: 1.863155e-05	ci right 4.501082e-05	k: 22	n:740000
ZEB2   740000 perm   433 sec   (1707 perm/sec)   p_kst 2.972973e-05   p_cons 2.519459e-01   p_joint 1.094595e-04

Joint ci ratio: 4.276828e-01	ci left: 8.814632e-05	ci right 1.371862e-04	k: 83	n:750000
Cons ci ratio: 7.798462e-03	ci left: 2.510137e-01	ci right 2.529802e-01	k: 188997	n:750000
KS ci ratio: 7.839864e-01	ci left: 2.050311e-05	ci right 4.761309e-05	k: 24	n:750000
ZEB2   750000 perm   442 sec   (1695 perm/sec)   p_kst 3.200000e-05   p_cons 2.519960e-01   p_joint 1.106667e-04

Joint ci ratio: 4.276831e-01	ci left: 8.698648e-05	ci right 1.353811e-04	k: 83	n:760000
Cons ci ratio: 7.746391e-03	ci left: 2.510492e-01	ci right 2.530027e-01	k: 191539	n:760000
KS ci ratio: 7.839866e-01	ci left: 2.023333e-05	ci right 4.698661e-05	k: 24	n:760000
ZEB2   760000 perm   451 sec   (1683 perm/sec)   p_kst 3.157895e-05   p_cons 2.520250e-01   p_joint 1.092105e-04

Joint ci ratio: 4.251600e-01	ci left: 8.701609e-05	ci right 1.350602e-04	k: 84	n:770000
Cons ci ratio: 7.694448e-03	ci left: 2.511278e-01	ci right 2.530688e-01	k: 194115	n:770000
KS ci ratio: 7.687618e-01	ci left: 2.101138e-05	ci right 4.792811e-05	k: 25	n:770000
ZEB2   770000 perm   461 sec   (1672 perm/sec)   p_kst 3.246753e-05   p_cons 2.520974e-01   p_joint 1.090909e-04

Joint ci ratio: 4.251603e-01	ci left: 8.590048e-05	ci right 1.333287e-04	k: 84	n:780000
Cons ci ratio: 7.645095e-03	ci left: 2.511277e-01	ci right 2.530562e-01	k: 196631	n:780000
KS ci ratio: 7.687619e-01	ci left: 2.074200e-05	ci right 4.731365e-05	k: 25	n:780000
ZEB2   780000 perm   470 sec   (1660 perm/sec)   p_kst 3.205128e-05   p_cons 2.520910e-01   p_joint 1.076923e-04

Joint ci ratio: 4.226812e-01	ci left: 8.594389e-05	ci right 1.330411e-04	k: 85	n:790000
Cons ci ratio: 7.596884e-03	ci left: 2.511175e-01	ci right 2.530337e-01	k: 199139	n:790000
KS ci ratio: 7.687621e-01	ci left: 2.047945e-05	ci right 4.671475e-05	k: 25	n:790000
ZEB2   790000 perm   479 sec   (1648 perm/sec)   p_kst 3.164557e-05   p_cons 2.520747e-01   p_joint 1.075949e-04

Joint ci ratio: 4.824984e-01	ci left: 6.270758e-05	ci right 1.035586e-04	k: 65	n:800000
Cons ci ratio: 7.548647e-03	ci left: 2.511538e-01	ci right 2.530580e-01	k: 201684	n:800000
KS ci ratio: 7.687623e-01	ci left: 2.022345e-05	ci right 4.613082e-05	k: 25	n:800000
ZEB2   800000 perm   489 sec   (1637 perm/sec)   p_kst 3.125000e-05   p_cons 2.521050e-01   p_joint 8.125000e-05

Joint ci ratio: 4.824987e-01	ci left: 6.193340e-05	ci right 1.022802e-04	k: 65	n:810000
Cons ci ratio: 7.501318e-03	ci left: 2.511892e-01	ci right 2.530817e-01	k: 204229	n:810000
KS ci ratio: 7.687624e-01	ci left: 1.997378e-05	ci right 4.556131e-05	k: 25	n:810000
ZEB2   810000 perm   498 sec   (1626 perm/sec)   p_kst 3.086420e-05   p_cons 2.521346e-01   p_joint 8.024691e-05

Joint ci ratio: 4.788844e-01	ci left: 6.224979e-05	ci right 1.023991e-04	k: 66	n:820000
Cons ci ratio: 7.456363e-03	ci left: 2.511483e-01	ci right 2.530291e-01	k: 206712	n:820000
KS ci ratio: 7.687626e-01	ci left: 1.973019e-05	ci right 4.500569e-05	k: 25	n:820000
ZEB2   820000 perm   508 sec   (1615 perm/sec)   p_kst 3.048780e-05   p_cons 2.520878e-01   p_joint 8.048780e-05

Joint ci ratio: 4.718926e-01	ci left: 6.362062e-05	ci right 1.038618e-04	k: 68	n:830000
Cons ci ratio: 7.410004e-03	ci left: 2.512203e-01	ci right 2.530899e-01	k: 209288	n:830000
KS ci ratio: 7.543916e-01	ci left: 2.046283e-05	ci right 4.589849e-05	k: 26	n:830000
ZEB2   830000 perm   518 sec   (1604 perm/sec)   p_kst 3.132530e-05   p_cons 2.521542e-01   p_joint 8.192771e-05

Joint ci ratio: 4.824994e-01	ci left: 5.972148e-05	ci right 9.862733e-05	k: 65	n:840000
Cons ci ratio: 7.368290e-03	ci left: 2.510968e-01	ci right 2.529549e-01	k: 211701	n:840000
KS ci ratio: 7.543918e-01	ci left: 2.021922e-05	ci right 4.535208e-05	k: 26	n:840000
ZEB2   840000 perm   527 sec   (1593 perm/sec)   p_kst 3.095238e-05   p_cons 2.520250e-01   p_joint 7.738095e-05

Joint ci ratio: 4.824996e-01	ci left: 5.901887e-05	ci right 9.746702e-05	k: 65	n:850000
Cons ci ratio: 7.325808e-03	ci left: 2.510514e-01	ci right 2.528985e-01	k: 214178	n:850000
KS ci ratio: 7.543919e-01	ci left: 1.998135e-05	ci right 4.481853e-05	k: 26	n:850000
ZEB2   850000 perm   537 sec   (1582 perm/sec)   p_kst 3.058824e-05   p_cons 2.519741e-01   p_joint 7.647059e-05

Joint ci ratio: 4.753508e-01	ci left: 6.037733e-05	ci right 9.893807e-05	k: 67	n:860000
Cons ci ratio: 7.283984e-03	ci left: 2.510107e-01	ci right 2.528468e-01	k: 216658	n:860000
KS ci ratio: 7.279130e-01	ci left: 2.163475e-05	ci right 4.705524e-05	k: 28	n:860000
ZEB2   860000 perm   547 sec   (1572 perm/sec)   p_kst 3.255814e-05   p_cons 2.519279e-01   p_joint 7.790698e-05

Joint ci ratio: 4.788855e-01	ci left: 5.867219e-05	ci right 9.651416e-05	k: 66	n:870000
Cons ci ratio: 7.241920e-03	ci left: 2.510202e-01	ci right 2.528458e-01	k: 219181	n:870000
KS ci ratio: 7.279132e-01	ci left: 2.138608e-05	ci right 4.651437e-05	k: 28	n:870000
ZEB2   870000 perm   557 sec   (1562 perm/sec)   p_kst 3.218391e-05   p_cons 2.519322e-01   p_joint 7.586207e-05

Joint ci ratio: 4.861979e-01	ci left: 5.600930e-05	ci right 9.287017e-05	k: 64	n:880000
Cons ci ratio: 7.200423e-03	ci left: 2.510375e-01	ci right 2.528527e-01	k: 221711	n:880000
KS ci ratio: 7.279133e-01	ci left: 2.114305e-05	ci right 4.598581e-05	k: 28	n:880000
ZEB2   880000 perm   567 sec   (1551 perm/sec)   p_kst 3.181818e-05   p_cons 2.519443e-01   p_joint 7.272727e-05

Joint ci ratio: 4.825005e-01	ci left: 5.636631e-05	ci right 9.308652e-05	k: 65	n:890000
Cons ci ratio: 7.159440e-03	ci left: 2.510646e-01	ci right 2.528696e-01	k: 224250	n:890000
KS ci ratio: 7.279135e-01	ci left: 2.090549e-05	ci right 4.546912e-05	k: 28	n:890000
ZEB2   890000 perm   577 sec   (1541 perm/sec)   p_kst 3.146067e-05   p_cons 2.519663e-01   p_joint 7.303371e-05

Joint ci ratio: 4.978231e-01	ci left: 5.184501e-05	ci right 8.706255e-05	k: 61	n:900000
Cons ci ratio: 7.120387e-03	ci left: 2.510256e-01	ci right 2.528205e-01	k: 226730	n:900000
KS ci ratio: 7.279136e-01	ci left: 2.067320e-05	ci right 4.496391e-05	k: 28	n:900000
ZEB2   900000 perm   588 sec   (1531 perm/sec)   p_kst 3.111111e-05   p_cons 2.519222e-01   p_joint 6.777778e-05

Joint ci ratio: 4.938562e-01	ci left: 5.223670e-05	ci right 8.734114e-05	k: 62	n:910000
Cons ci ratio: 7.080562e-03	ci left: 2.510621e-01	ci right 2.528472e-01	k: 229278	n:910000
KS ci ratio: 7.279137e-01	ci left: 2.044602e-05	ci right 4.446980e-05	k: 28	n:910000
ZEB2   910000 perm   598 sec   (1521 perm/sec)   p_kst 3.076923e-05   p_cons 2.519538e-01   p_joint 6.813187e-05

Joint ci ratio: 4.861987e-01	ci left: 5.357409e-05	ci right 8.883237e-05	k: 64	n:920000
Cons ci ratio: 7.041804e-03	ci left: 2.510762e-01	ci right 2.528515e-01	k: 231806	n:920000
KS ci ratio: 7.279139e-01	ci left: 2.022378e-05	ci right 4.398644e-05	k: 28	n:920000
ZEB2   920000 perm   609 sec   (1512 perm/sec)   p_kst 3.043478e-05   p_cons 2.519630e-01   p_joint 6.956522e-05

Joint ci ratio: 4.825013e-01	ci left: 5.394194e-05	ci right 8.908284e-05	k: 65	n:930000
Cons ci ratio: 7.005314e-03	ci left: 2.510019e-01	ci right 2.527674e-01	k: 234252	n:930000
KS ci ratio: 7.156789e-01	ci left: 2.088370e-05	ci right 4.478339e-05	k: 29	n:930000
ZEB2   930000 perm   619 sec   (1502 perm/sec)   p_kst 3.118280e-05   p_cons 2.518839e-01   p_joint 6.989247e-05

Joint ci ratio: 4.825014e-01	ci left: 5.336808e-05	ci right 8.813516e-05	k: 65	n:940000
Cons ci ratio: 6.968165e-03	ci left: 2.509950e-01	ci right 2.527512e-01	k: 236760	n:940000
KS ci ratio: 7.156790e-01	ci left: 2.066154e-05	ci right 4.430698e-05	k: 29	n:940000
ZEB2   940000 perm   630 sec   (1492 perm/sec)   p_kst 3.085106e-05   p_cons 2.518723e-01   p_joint 6.914894e-05

Joint ci ratio: 4.788871e-01	ci left: 5.373134e-05	ci right 8.838672e-05	k: 66	n:950000
Cons ci ratio: 6.931137e-03	ci left: 2.510136e-01	ci right 2.527605e-01	k: 239292	n:950000
KS ci ratio: 7.040409e-01	ci left: 2.130628e-05	ci right 4.508061e-05	k: 30	n:950000
ZEB2   950000 perm   641 sec   (1483 perm/sec)   p_kst 3.157895e-05   p_cons 2.518863e-01   p_joint 6.947368e-05

Joint ci ratio: 4.788873e-01	ci left: 5.317163e-05	ci right 8.746604e-05	k: 66	n:960000
Cons ci ratio: 6.895512e-03	ci left: 2.509871e-01	ci right 2.527248e-01	k: 241781	n:960000
KS ci ratio: 6.929527e-01	ci left: 2.194072e-05	ci right 4.583513e-05	k: 31	n:960000
ZEB2   960000 perm   652 sec   (1474 perm/sec)   p_kst 3.229167e-05   p_cons 2.518552e-01   p_joint 6.875000e-05

Joint ci ratio: 4.753529e-01	ci left: 5.353037e-05	ci right 8.771839e-05	k: 67	n:970000
Cons ci ratio: 6.860018e-03	ci left: 2.509838e-01	ci right 2.527125e-01	k: 244292	n:970000
KS ci ratio: 6.929529e-01	ci left: 2.171453e-05	ci right 4.536261e-05	k: 31	n:970000
ZEB2   970000 perm   662 sec   (1464 perm/sec)   p_kst 3.195876e-05   p_cons 2.518474e-01   p_joint 6.907216e-05

Joint ci ratio: 4.718957e-01	ci left: 5.388270e-05	ci right 8.796470e-05	k: 68	n:980000
Cons ci ratio: 6.825270e-03	ci left: 2.509694e-01	ci right 2.526892e-01	k: 246792	n:980000
KS ci ratio: 6.823726e-01	ci left: 2.233477e-05	ci right 4.609607e-05	k: 32	n:980000
ZEB2   980000 perm   673 sec   (1455 perm/sec)   p_kst 3.265306e-05   p_cons 2.518286e-01   p_joint 6.938776e-05

Joint ci ratio: 2.595783e-01	ci left: 2.004355e-04	ci right 2.611375e-04	k: 227	n:990000
Cons ci ratio: 6.790262e-03	ci left: 2.509987e-01	ci right 2.527098e-01	k: 249335	n:990000
KS ci ratio: 6.625889e-01	ci left: 2.378394e-05	ci right 4.799118e-05	k: 34	n:990000
ZEB2   990000 perm   684 sec   (1446 perm/sec)   p_kst 3.434343e-05   p_cons 2.518535e-01   p_joint 2.292929e-04

Joint ci ratio: 2.578871e-01	ci left: 2.012367e-04	ci right 2.617203e-04	k: 230	n:1000000
Cons ci ratio: 6.756414e-03	ci left: 2.509925e-01	ci right 2.526950e-01	k: 251843	n:1000000
KS ci ratio: 6.533212e-01	ci left: 2.437890e-05	ci right 4.867619e-05	k: 35	n:1000000
ZEB2   1000000 perm   696 sec   (1437 perm/sec)   p_kst 3.500000e-05   p_cons 2.518430e-01   p_joint 2.300000e-04

Joint ci ratio: 2.573309e-01	ci left: 2.001704e-04	ci right 2.601829e-04	k: 231	n:1010000
Cons ci ratio: 6.723969e-03	ci left: 2.509359e-01	ci right 2.526299e-01	k: 254300	n:1010000
KS ci ratio: 6.444319e-01	ci left: 2.496444e-05	ci right 4.934538e-05	k: 36	n:1010000
ZEB2   1010000 perm   707 sec   (1429 perm/sec)   p_kst 3.564356e-05   p_cons 2.517822e-01   p_joint 2.287129e-04

Joint ci ratio: 2.551406e-01	ci left: 2.018777e-04	ci right 2.618049e-04	k: 235	n:1020000
Cons ci ratio: 6.690123e-03	ci left: 2.509853e-01	ci right 2.526710e-01	k: 256864	n:1020000
KS ci ratio: 6.444320e-01	ci left: 2.471968e-05	ci right 4.886160e-05	k: 36	n:1020000
ZEB2   1020000 perm   718 sec   (1420 perm/sec)   p_kst 3.529412e-05   p_cons 2.518275e-01   p_joint 2.303922e-04

Joint ci ratio: 2.546019e-01	ci left: 2.008265e-04	ci right 2.602959e-04	k: 236	n:1030000
Cons ci ratio: 6.656904e-03	ci left: 2.510270e-01	ci right 2.527045e-01	k: 259421	n:1030000
KS ci ratio: 6.444321e-01	ci left: 2.447969e-05	ci right 4.838722e-05	k: 36	n:1030000
ZEB2   1030000 perm   730 sec   (1412 perm/sec)   p_kst 3.495146e-05   p_cons 2.518650e-01   p_joint 2.291262e-04

Joint ci ratio: 2.514386e-01	ci left: 2.042990e-04	ci right 2.639273e-04	k: 242	n:1040000
Cons ci ratio: 6.624986e-03	ci left: 2.510217e-01	ci right 2.526912e-01	k: 261930	n:1040000
KS ci ratio: 6.276903e-01	ci left: 2.585692e-05	ci right 5.015155e-05	k: 38	n:1040000
ZEB2   1040000 perm   741 sec   (1403 perm/sec)   p_kst 3.653846e-05   p_cons 2.518558e-01   p_joint 2.326923e-04

Joint ci ratio: 2.551415e-01	ci left: 1.961097e-04	ci right 2.543249e-04	k: 235	n:1050000
Cons ci ratio: 6.593022e-03	ci left: 2.510452e-01	ci right 2.527067e-01	k: 264469	n:1050000
KS ci ratio: 6.276904e-01	ci left: 2.561066e-05	ci right 4.967392e-05	k: 38	n:1050000
ZEB2   1050000 perm   753 sec   (1395 perm/sec)   p_kst 3.619048e-05   p_cons 2.518752e-01   p_joint 2.238095e-04

Joint ci ratio: 2.567794e-01	ci left: 1.916109e-04	ci right 2.489143e-04	k: 232	n:1060000
Cons ci ratio: 6.561780e-03	ci left: 2.510531e-01	ci right 2.527068e-01	k: 266992	n:1060000
KS ci ratio: 6.121890e-01	ci left: 2.695918e-05	ci right 5.138517e-05	k: 40	n:1060000
ZEB2   1060000 perm   764 sec   (1387 perm/sec)   p_kst 3.773585e-05   p_cons 2.518792e-01   p_joint 2.188679e-04

Joint ci ratio: 2.551420e-01	ci left: 1.924440e-04	ci right 2.495712e-04	k: 235	n:1070000
Cons ci ratio: 6.531479e-03	ci left: 2.510319e-01	ci right 2.526778e-01	k: 269484	n:1070000
KS ci ratio: 6.121891e-01	ci left: 2.670722e-05	ci right 5.090493e-05	k: 40	n:1070000
ZEB2   1070000 perm   776 sec   (1378 perm/sec)   p_kst 3.738318e-05   p_cons 2.518542e-01   p_joint 2.196262e-04

Joint ci ratio: 2.562305e-01	ci left: 1.889289e-04	ci right 2.452902e-04	k: 233	n:1080000
Cons ci ratio: 6.500668e-03	ci left: 2.510648e-01	ci right 2.527032e-01	k: 272034	n:1080000
KS ci ratio: 6.121892e-01	ci left: 2.645993e-05	ci right 5.043359e-05	k: 40	n:1080000
ZEB2   1080000 perm   788 sec   (1371 perm/sec)   p_kst 3.703704e-05   p_cons 2.518833e-01   p_joint 2.157407e-04

Joint ci ratio: 2.584498e-01	ci left: 1.837625e-04	ci right 2.391340e-04	k: 229	n:1090000
Cons ci ratio: 6.471124e-03	ci left: 2.510486e-01	ci right 2.526793e-01	k: 274531	n:1090000
KS ci ratio: 6.121894e-01	ci left: 2.621718e-05	ci right 4.997090e-05	k: 40	n:1090000
ZEB2   1090000 perm   800 sec   (1363 perm/sec)   p_kst 3.669725e-05   p_cons 2.518633e-01   p_joint 2.100917e-04

Joint ci ratio: 2.567804e-01	ci left: 1.846431e-04	ci right 2.398630e-04	k: 232	n:1100000
Cons ci ratio: 6.442414e-03	ci left: 2.510072e-01	ci right 2.526304e-01	k: 277000	n:1100000
KS ci ratio: 6.121895e-01	ci left: 2.597884e-05	ci right 4.951663e-05	k: 40	n:1100000
ZEB2   1100000 perm   812 sec   (1355 perm/sec)   p_kst 3.636364e-05   p_cons 2.518182e-01   p_joint 2.109091e-04

Joint ci ratio: 2.921557e-01	ci left: 1.385034e-04	ci right 1.866910e-04	k: 179	n:1110000
Cons ci ratio: 6.413010e-03	ci left: 2.510296e-01	ci right 2.526455e-01	k: 279539	n:1110000
KS ci ratio: 5.977825e-01	ci left: 2.727032e-05	ci right 5.114542e-05	k: 42	n:1110000
ZEB2   1110000 perm   824 sec   (1347 perm/sec)   p_kst 3.783784e-05   p_cons 2.518369e-01   p_joint 1.612613e-04

Joint ci ratio: 2.913476e-01	ci left: 1.380943e-04	ci right 1.859821e-04	k: 180	n:1120000
Cons ci ratio: 6.385063e-03	ci left: 2.509892e-01	ci right 2.525978e-01	k: 282008	n:1120000
KS ci ratio: 5.977827e-01	ci left: 2.702683e-05	ci right 5.068877e-05	k: 42	n:1120000
ZEB2   1120000 perm   836 sec   (1339 perm/sec)   p_kst 3.750000e-05   p_cons 2.517929e-01   p_joint 1.607143e-04

Joint ci ratio: 3.006275e-01	ci left: 1.278601e-04	ci right 1.738814e-04	k: 169	n:1130000
Cons ci ratio: 6.356448e-03	ci left: 2.510105e-01	ci right 2.526120e-01	k: 284546	n:1130000
KS ci ratio: 5.909505e-01	ci left: 2.753935e-05	ci right 5.125693e-05	k: 43	n:1130000
ZEB2   1130000 perm   848 sec   (1332 perm/sec)   p_kst 3.805310e-05   p_cons 2.518106e-01   p_joint 1.495575e-04

Joint ci ratio: 2.997473e-01	ci left: 1.275497e-04	ci right 1.732992e-04	k: 170	n:1140000
Cons ci ratio: 6.328038e-03	ci left: 2.510420e-01	ci right 2.526365e-01	k: 287096	n:1140000
KS ci ratio: 5.909506e-01	ci left: 2.729777e-05	ci right 5.080731e-05	k: 43	n:1140000
ZEB2   1140000 perm   861 sec   (1324 perm/sec)   p_kst 3.771930e-05   p_cons 2.518386e-01   p_joint 1.491228e-04

Joint ci ratio: 2.980095e-01	ci left: 1.280493e-04	ci right 1.736614e-04	k: 172	n:1150000
Cons ci ratio: 6.299903e-03	ci left: 2.510790e-01	ci right 2.526666e-01	k: 289653	n:1150000
KS ci ratio: 5.909507e-01	ci left: 2.706040e-05	ci right 5.036551e-05	k: 43	n:1150000
ZEB2   1150000 perm   873 sec   (1317 perm/sec)   p_kst 3.739130e-05   p_cons 2.518722e-01   p_joint 1.495652e-04

Joint ci ratio: 2.971520e-01	ci left: 1.277431e-04	ci right 1.730905e-04	k: 173	n:1160000
Cons ci ratio: 6.272643e-03	ci left: 2.510852e-01	ci right 2.526660e-01	k: 292175	n:1160000
KS ci ratio: 5.909508e-01	ci left: 2.682712e-05	ci right 4.993133e-05	k: 43	n:1160000
ZEB2   1160000 perm   886 sec   (1309 perm/sec)   p_kst 3.706897e-05   p_cons 2.518750e-01   p_joint 1.491379e-04

Joint ci ratio: 2.946228e-01	ci left: 1.290251e-04	ci right 1.743650e-04	k: 176	n:1170000
Cons ci ratio: 6.245393e-03	ci left: 2.511119e-01	ci right 2.526859e-01	k: 294721	n:1170000
KS ci ratio: 5.909509e-01	ci left: 2.659783e-05	ci right 4.950457e-05	k: 43	n:1170000
ZEB2   1170000 perm   898 sec   (1302 perm/sec)   p_kst 3.675214e-05   p_cons 2.518983e-01   p_joint 1.504274e-04

Joint ci ratio: 2.929722e-01	ci left: 1.295017e-04	ci right 1.747068e-04	k: 178	n:1180000
Cons ci ratio: 6.218636e-03	ci left: 2.511296e-01	ci right 2.526970e-01	k: 297257	n:1180000
KS ci ratio: 5.909510e-01	ci left: 2.637242e-05	ci right 4.908504e-05	k: 43	n:1180000
ZEB2   1180000 perm   911 sec   (1295 perm/sec)   p_kst 3.644068e-05   p_cons 2.519127e-01   p_joint 1.508475e-04

Joint ci ratio: 2.921573e-01	ci left: 1.291921e-04	ci right 1.741405e-04	k: 179	n:1190000
Cons ci ratio: 6.191998e-03	ci left: 2.511605e-01	ci right 2.527214e-01	k: 299809	n:1190000
KS ci ratio: 5.909511e-01	ci left: 2.615080e-05	ci right 4.867257e-05	k: 43	n:1190000
ZEB2   1190000 perm   924 sec   (1288 perm/sec)   p_kst 3.613445e-05   p_cons 2.519403e-01   p_joint 1.504202e-04

Joint ci ratio: 2.921575e-01	ci left: 1.281155e-04	ci right 1.726893e-04	k: 179	n:1200000
Cons ci ratio: 6.165905e-03	ci left: 2.511784e-01	ci right 2.527328e-01	k: 302346	n:1200000
KS ci ratio: 5.909512e-01	ci left: 2.593288e-05	ci right 4.826696e-05	k: 43	n:1200000
ZEB2   1200000 perm   937 sec   (1281 perm/sec)   p_kst 3.583333e-05   p_cons 2.519550e-01   p_joint 1.491667e-04

Joint ci ratio: 3.138308e-01	ci left: 1.087276e-04	ci right 1.499264e-04	k: 155	n:1210000
Cons ci ratio: 6.140448e-03	ci left: 2.511771e-01	ci right 2.527250e-01	k: 304860	n:1210000
KS ci ratio: 5.909512e-01	ci left: 2.571856e-05	ci right 4.786807e-05	k: 43	n:1210000
ZEB2   1210000 perm   949 sec   (1275 perm/sec)   p_kst 3.553719e-05   p_cons 2.519504e-01   p_joint 1.280992e-04

Joint ci ratio: 3.128298e-01	ci left: 1.085916e-04	ci right 1.495814e-04	k: 156	n:1220000
Cons ci ratio: 6.115024e-03	ci left: 2.511929e-01	ci right 2.527345e-01	k: 307395	n:1220000
KS ci ratio: 5.843481e-01	ci left: 2.620542e-05	ci right 4.841605e-05	k: 44	n:1220000
ZEB2   1220000 perm   962 sec   (1268 perm/sec)   p_kst 3.606557e-05   p_cons 2.519631e-01   p_joint 1.278689e-04

Joint ci ratio: 3.118383e-01	ci left: 1.084580e-04	ci right 1.492418e-04	k: 157	n:1230000
Cons ci ratio: 6.090085e-03	ci left: 2.511980e-01	ci right 2.527333e-01	k: 309917	n:1230000
KS ci ratio: 5.843482e-01	ci left: 2.599237e-05	ci right 4.802243e-05	k: 44	n:1230000
ZEB2   1230000 perm   975 sec   (1261 perm/sec)   p_kst 3.577236e-05   p_cons 2.519650e-01   p_joint 1.276423e-04

Joint ci ratio: 3.108562e-01	ci left: 1.083268e-04	ci right 1.489075e-04	k: 158	n:1240000
Cons ci ratio: 6.065279e-03	ci left: 2.512135e-01	ci right 2.527425e-01	k: 312452	n:1240000
KS ci ratio: 5.843483e-01	ci left: 2.578275e-05	ci right 4.763515e-05	k: 44	n:1240000
ZEB2   1240000 perm   989 sec   (1254 perm/sec)   p_kst 3.548387e-05   p_cons 2.519774e-01   p_joint 1.274194e-04

Joint ci ratio: 3.098833e-01	ci left: 1.081979e-04	ci right 1.485784e-04	k: 159	n:1250000
Cons ci ratio: 6.040646e-03	ci left: 2.512367e-01	ci right 2.527597e-01	k: 314997	n:1250000
KS ci ratio: 5.843483e-01	ci left: 2.557649e-05	ci right 4.725407e-05	k: 44	n:1250000
ZEB2   1250000 perm   1002 sec   (1248 perm/sec)   p_kst 3.520000e-05   p_cons 2.519976e-01   p_joint 1.272000e-04

Joint ci ratio: 3.089194e-01	ci left: 1.080712e-04	ci right 1.482543e-04	k: 160	n:1260000
Cons ci ratio: 6.016906e-03	ci left: 2.512223e-01	ci right 2.527392e-01	k: 317495	n:1260000
KS ci ratio: 5.843484e-01	ci left: 2.537350e-05	ci right 4.687904e-05	k: 44	n:1260000
ZEB2   1260000 perm   1015 sec   (1241 perm/sec)   p_kst 3.492063e-05   p_cons 2.519802e-01   p_joint 1.269841e-04

Joint ci ratio: 3.098836e-01	ci left: 1.064940e-04	ci right 1.462386e-04	k: 159	n:1270000
Cons ci ratio: 5.993531e-03	ci left: 2.512026e-01	ci right 2.527135e-01	k: 319986	n:1270000
KS ci ratio: 5.779618e-01	ci left: 2.584524e-05	ci right 4.741195e-05	k: 45	n:1270000
ZEB2   1270000 perm   1028 sec   (1235 perm/sec)   p_kst 3.543307e-05   p_cons 2.519575e-01   p_joint 1.251969e-04

Joint ci ratio: 3.079647e-01	ci left: 1.071034e-04	ci right 1.467793e-04	k: 161	n:1280000
Cons ci ratio: 5.970414e-03	ci left: 2.511840e-01	ci right 2.526890e-01	k: 322478	n:1280000
KS ci ratio: 5.717800e-01	ci left: 2.631088e-05	ci right 4.793530e-05	k: 46	n:1280000
ZEB2   1280000 perm   1041 sec   (1229 perm/sec)   p_kst 3.593750e-05   p_cons 2.519359e-01   p_joint 1.257812e-04

Joint ci ratio: 3.079648e-01	ci left: 1.062731e-04	ci right 1.456415e-04	k: 161	n:1290000
Cons ci ratio: 5.947759e-03	ci left: 2.511534e-01	ci right 2.526524e-01	k: 324954	n:1290000
KS ci ratio: 5.717801e-01	ci left: 2.610692e-05	ci right 4.756371e-05	k: 46	n:1290000
ZEB2   1290000 perm   1055 sec   (1223 perm/sec)   p_kst 3.565891e-05   p_cons 2.519023e-01   p_joint 1.248062e-04

Joint ci ratio: 3.079650e-01	ci left: 1.054556e-04	ci right 1.445212e-04	k: 161	n:1300000
Cons ci ratio: 5.924694e-03	ci left: 2.511655e-01	ci right 2.526587e-01	k: 327485	n:1300000
KS ci ratio: 5.717802e-01	ci left: 2.590610e-05	ci right 4.719784e-05	k: 46	n:1300000
ZEB2   1300000 perm   1068 sec   (1217 perm/sec)   p_kst 3.538462e-05   p_cons 2.519115e-01   p_joint 1.238462e-04

Joint ci ratio: 3.079651e-01	ci left: 1.046506e-04	ci right 1.434180e-04	k: 161	n:1310000
Cons ci ratio: 5.902027e-03	ci left: 2.511690e-01	ci right 2.526565e-01	k: 330005	n:1310000
KS ci ratio: 5.717803e-01	ci left: 2.570834e-05	ci right 4.683755e-05	k: 46	n:1310000
ZEB2   1310000 perm   1082 sec   (1211 perm/sec)   p_kst 3.511450e-05   p_cons 2.519122e-01   p_joint 1.229008e-04

Joint ci ratio: 3.070190e-01	ci left: 1.045569e-04	ci right 1.431473e-04	k: 162	n:1320000
Cons ci ratio: 5.879960e-03	ci left: 2.511505e-01	ci right 2.526324e-01	k: 332496	n:1320000
KS ci ratio: 5.717804e-01	ci left: 2.551358e-05	ci right 4.648272e-05	k: 46	n:1320000
ZEB2   1320000 perm   1095 sec   (1205 perm/sec)   p_kst 3.484848e-05   p_cons 2.518909e-01   p_joint 1.227273e-04

Joint ci ratio: 3.042319e-01	ci left: 1.058535e-04	ci right 1.444991e-04	k: 165	n:1330000
Cons ci ratio: 5.857906e-03	ci left: 2.511474e-01	ci right 2.526236e-01	k: 335007	n:1330000
KS ci ratio: 5.717804e-01	ci left: 2.532175e-05	ci right 4.613323e-05	k: 46	n:1330000
ZEB2   1330000 perm   1109 sec   (1199 perm/sec)   p_kst 3.458647e-05   p_cons 2.518850e-01   p_joint 1.240602e-04

Joint ci ratio: 3.060817e-01	ci left: 1.036853e-04	ci right 1.418143e-04	k: 163	n:1340000
Cons ci ratio: 5.835509e-03	ci left: 2.511823e-01	ci right 2.526531e-01	k: 337569	n:1340000
KS ci ratio: 5.657929e-01	ci left: 2.577163e-05	ci right 4.664155e-05	k: 47	n:1340000
ZEB2   1340000 perm   1123 sec   (1194 perm/sec)   p_kst 3.507463e-05   p_cons 2.519172e-01   p_joint 1.216418e-04

Joint ci ratio: 3.051528e-01	ci left: 1.036012e-04	ci right 1.415612e-04	k: 164	n:1350000
Cons ci ratio: 5.813458e-03	ci left: 2.512108e-01	ci right 2.526762e-01	k: 340123	n:1350000
KS ci ratio: 5.657930e-01	ci left: 2.558073e-05	ci right 4.629606e-05	k: 47	n:1350000
ZEB2   1350000 perm   1136 sec   (1188 perm/sec)   p_kst 3.481481e-05   p_cons 2.519430e-01   p_joint 1.214815e-04

Joint ci ratio: 3.042323e-01	ci left: 1.035185e-04	ci right 1.413117e-04	k: 165	n:1360000
Cons ci ratio: 5.791700e-03	ci left: 2.512360e-01	ci right 2.526960e-01	k: 342673	n:1360000
KS ci ratio: 5.599897e-01	ci left: 2.602321e-05	ci right 4.679461e-05	k: 48	n:1360000
ZEB2   1360000 perm   1150 sec   (1182 perm/sec)   p_kst 3.529412e-05   p_cons 2.519654e-01   p_joint 1.213235e-04

Joint ci ratio: 3.024159e-01	ci left: 1.041116e-04	ci right 1.418508e-04	k: 167	n:1370000
Cons ci ratio: 5.770319e-03	ci left: 2.512520e-01	ci right 2.527067e-01	k: 345211	n:1370000
KS ci ratio: 5.543614e-01	ci left: 2.646031e-05	ci right 4.728484e-05	k: 49	n:1370000
ZEB2   1370000 perm   1164 sec   (1177 perm/sec)   p_kst 3.576642e-05   p_cons 2.519788e-01   p_joint 1.218978e-04

Joint ci ratio: 3.006316e-01	ci left: 1.046969e-04	ci right 1.423815e-04	k: 169	n:1380000
Cons ci ratio: 5.750002e-03	ci left: 2.512135e-01	ci right 2.526629e-01	k: 347674	n:1380000
KS ci ratio: 5.488995e-01	ci left: 2.689212e-05	ci right 4.776695e-05	k: 50	n:1380000
ZEB2   1380000 perm   1178 sec   (1171 perm/sec)   p_kst 3.623188e-05   p_cons 2.519377e-01   p_joint 1.224638e-04

Joint ci ratio: 3.006318e-01	ci left: 1.039436e-04	ci right 1.413572e-04	k: 169	n:1390000
Cons ci ratio: 5.729055e-03	ci left: 2.512310e-01	ci right 2.526751e-01	k: 350214	n:1390000
KS ci ratio: 5.488995e-01	ci left: 2.669865e-05	ci right 4.742330e-05	k: 50	n:1390000
ZEB2   1390000 perm   1193 sec   (1166 perm/sec)   p_kst 3.597122e-05   p_cons 2.519525e-01   p_joint 1.215827e-04

Joint ci ratio: 3.006319e-01	ci left: 1.032012e-04	ci right 1.403475e-04	k: 169	n:1400000
Cons ci ratio: 5.708293e-03	ci left: 2.512510e-01	ci right 2.526900e-01	k: 352758	n:1400000
KS ci ratio: 5.488996e-01	ci left: 2.650794e-05	ci right 4.708457e-05	k: 50	n:1400000
ZEB2   1400000 perm   1207 sec   (1160 perm/sec)   p_kst 3.571429e-05   p_cons 2.519700e-01   p_joint 1.207143e-04

Joint ci ratio: 2.997516e-01	ci left: 1.031251e-04	ci right 1.401146e-04	k: 170	n:1410000
Cons ci ratio: 5.687520e-03	ci left: 2.512864e-01	ci right 2.527203e-01	k: 355324	n:1410000
KS ci ratio: 5.488997e-01	ci left: 2.631994e-05	ci right 4.675063e-05	k: 50	n:1410000
ZEB2   1410000 perm   1221 sec   (1154 perm/sec)   p_kst 3.546099e-05   p_cons 2.520028e-01   p_joint 1.205674e-04

Joint ci ratio: 2.997517e-01	ci left: 1.023988e-04	ci right 1.391279e-04	k: 170	n:1420000
Cons ci ratio: 5.667818e-03	ci left: 2.512650e-01	ci right 2.526938e-01	k: 357810	n:1420000
KS ci ratio: 5.488997e-01	ci left: 2.613459e-05	ci right 4.642141e-05	k: 50	n:1420000
ZEB2   1420000 perm   1236 sec   (1149 perm/sec)   p_kst 3.521127e-05   p_cons 2.519789e-01   p_joint 1.197183e-04

Joint ci ratio: 3.098858e-01	ci left: 9.457847e-05	ci right 1.298764e-04	k: 159	n:1430000
Cons ci ratio: 5.647157e-03	ci left: 2.513214e-01	ci right 2.527453e-01	k: 360407	n:1430000
KS ci ratio: 5.488998e-01	ci left: 2.595183e-05	ci right 4.609678e-05	k: 50	n:1430000
ZEB2   1430000 perm   1250 sec   (1144 perm/sec)   p_kst 3.496503e-05   p_cons 2.520329e-01   p_joint 1.111888e-04

Joint ci ratio: 3.098859e-01	ci left: 9.392167e-05	ci right 1.289745e-04	k: 159	n:1440000
Cons ci ratio: 5.628171e-03	ci left: 2.512799e-01	ci right 2.526988e-01	k: 362864	n:1440000
KS ci ratio: 5.488999e-01	ci left: 2.577161e-05	ci right 4.577667e-05	k: 50	n:1440000
ZEB2   1440000 perm   1265 sec   (1138 perm/sec)   p_kst 3.472222e-05   p_cons 2.519889e-01   p_joint 1.104167e-04

Joint ci ratio: 3.079670e-01	ci left: 9.454634e-05	ci right 1.295709e-04	k: 161	n:1450000
Cons ci ratio: 5.608832e-03	ci left: 2.512756e-01	ci right 2.526896e-01	k: 365374	n:1450000
KS ci ratio: 5.435963e-01	ci left: 2.618828e-05	ci right 4.624497e-05	k: 51	n:1450000
ZEB2   1450000 perm   1280 sec   (1133 perm/sec)   p_kst 3.517241e-05   p_cons 2.519821e-01   p_joint 1.110345e-04

Joint ci ratio: 3.070209e-01	ci left: 9.453085e-05	ci right 1.294210e-04	k: 162	n:1460000
Cons ci ratio: 5.589528e-03	ci left: 2.512822e-01	ci right 2.526914e-01	k: 367900	n:1460000
KS ci ratio: 5.384435e-01	ci left: 2.660017e-05	ci right 4.670596e-05	k: 52	n:1460000
ZEB2   1460000 perm   1294 sec   (1128 perm/sec)   p_kst 3.561644e-05   p_cons 2.519863e-01   p_joint 1.109589e-04

Joint ci ratio: 3.060834e-01	ci left: 9.451574e-05	ci right 1.292730e-04	k: 163	n:1470000
Cons ci ratio: 5.570492e-03	ci left: 2.512840e-01	ci right 2.526884e-01	k: 370419	n:1470000
KS ci ratio: 5.334345e-01	ci left: 2.700735e-05	ci right 4.715981e-05	k: 53	n:1470000
ZEB2   1470000 perm   1309 sec   (1123 perm/sec)   p_kst 3.605442e-05   p_cons 2.519857e-01   p_joint 1.108844e-04

Joint ci ratio: 3.079673e-01	ci left: 9.262985e-05	ci right 1.269445e-04	k: 161	n:1480000
Cons ci ratio: 5.551888e-03	ci left: 2.512696e-01	ci right 2.526692e-01	k: 372914	n:1480000
KS ci ratio: 5.334345e-01	ci left: 2.682487e-05	ci right 4.684116e-05	k: 53	n:1480000
ZEB2   1480000 perm   1324 sec   (1118 perm/sec)   p_kst 3.581081e-05   p_cons 2.519689e-01   p_joint 1.087838e-04

Joint ci ratio: 3.070212e-01	ci left: 9.262753e-05	ci right 1.268152e-04	k: 162	n:1490000
Cons ci ratio: 5.532770e-03	ci left: 2.513030e-01	ci right 2.526979e-01	k: 375480	n:1490000
KS ci ratio: 5.334346e-01	ci left: 2.664483e-05	ci right 4.652680e-05	k: 53	n:1490000
ZEB2   1490000 perm   1339 sec   (1112 perm/sec)   p_kst 3.557047e-05   p_cons 2.520000e-01   p_joint 1.087248e-04

Joint ci ratio: 3.051547e-01	ci left: 9.324096e-05	ci right 1.274052e-04	k: 164	n:1500000
Cons ci ratio: 5.514677e-03	ci left: 2.512794e-01	ci right 2.526696e-01	k: 377961	n:1500000
KS ci ratio: 5.285628e-01	ci left: 2.704442e-05	ci right 4.697193e-05	k: 54	n:1500000
ZEB2   1500000 perm   1355 sec   (1107 perm/sec)   p_kst 3.600000e-05   p_cons 2.519740e-01   p_joint 1.093333e-04

Joint ci ratio: 3.089227e-01	ci left: 9.017850e-05	ci right 1.237091e-04	k: 160	n:1510000
Cons ci ratio: 5.496287e-03	ci left: 2.512885e-01	ci right 2.526741e-01	k: 380491	n:1510000
KS ci ratio: 5.285629e-01	ci left: 2.686532e-05	ci right 4.666086e-05	k: 54	n:1510000
ZEB2   1510000 perm   1370 sec   (1102 perm/sec)   p_kst 3.576159e-05   p_cons 2.519808e-01   p_joint 1.059603e-04

Joint ci ratio: 3.079678e-01	ci left: 9.019220e-05	ci right 1.236038e-04	k: 161	n:1520000
Cons ci ratio: 5.478539e-03	ci left: 2.512659e-01	ci right 2.526469e-01	k: 382973	n:1520000
KS ci ratio: 5.238222e-01	ci left: 2.725901e-05	ci right 4.709847e-05	k: 55	n:1520000
ZEB2   1520000 perm   1385 sec   (1097 perm/sec)   p_kst 3.618421e-05   p_cons 2.519559e-01   p_joint 1.059211e-04

Joint ci ratio: 3.079679e-01	ci left: 8.960270e-05	ci right 1.227960e-04	k: 161	n:1530000
Cons ci ratio: 5.461540e-03	ci left: 2.512038e-01	ci right 2.525801e-01	k: 385394	n:1530000
KS ci ratio: 5.238223e-01	ci left: 2.708085e-05	ci right 4.679064e-05	k: 55	n:1530000
ZEB2   1530000 perm   1401 sec   (1092 perm/sec)   p_kst 3.594771e-05   p_cons 2.518915e-01   p_joint 1.052288e-04

Joint ci ratio: 3.158667e-01	ci left: 8.423254e-05	ci right 1.163986e-04	k: 153	n:1540000
Cons ci ratio: 5.443956e-03	ci left: 2.511938e-01	ci right 2.525656e-01	k: 387894	n:1540000
KS ci ratio: 5.238223e-01	ci left: 2.690500e-05	ci right 4.648680e-05	k: 55	n:1540000
ZEB2   1540000 perm   1416 sec   (1088 perm/sec)   p_kst 3.571429e-05   p_cons 2.518792e-01   p_joint 9.935065e-05

Joint ci ratio: 3.158668e-01	ci left: 8.368910e-05	ci right 1.156477e-04	k: 153	n:1550000
Cons ci ratio: 5.426541e-03	ci left: 2.511839e-01	ci right 2.525513e-01	k: 390394	n:1550000
KS ci ratio: 5.238224e-01	ci left: 2.673142e-05	ci right 4.618689e-05	k: 55	n:1550000
ZEB2   1550000 perm   1431 sec   (1083 perm/sec)   p_kst 3.548387e-05   p_cons 2.518671e-01   p_joint 9.870968e-05

Joint ci ratio: 3.138354e-01	ci left: 8.433340e-05	ci right 1.162893e-04	k: 155	n:1560000
Cons ci ratio: 5.408805e-03	ci left: 2.512080e-01	ci right 2.525711e-01	k: 392947	n:1560000
KS ci ratio: 5.192070e-01	ci left: 2.711665e-05	ci right 4.661556e-05	k: 56	n:1560000
ZEB2   1560000 perm   1447 sec   (1078 perm/sec)   p_kst 3.589744e-05   p_cons 2.518891e-01   p_joint 9.935897e-05

Joint ci ratio: 3.128343e-01	ci left: 8.438310e-05	ci right 1.162355e-04	k: 156	n:1570000
Cons ci ratio: 5.391277e-03	ci left: 2.512294e-01	ci right 2.525881e-01	k: 395496	n:1570000
KS ci ratio: 5.147115e-01	ci left: 2.749772e-05	ci right 4.703804e-05	k: 57	n:1570000
ZEB2   1570000 perm   1463 sec   (1073 perm/sec)   p_kst 3.630573e-05   p_cons 2.519083e-01   p_joint 9.936306e-05

Joint ci ratio: 3.128344e-01	ci left: 8.384903e-05	ci right 1.154998e-04	k: 156	n:1580000
Cons ci ratio: 5.374623e-03	ci left: 2.512011e-01	ci right 2.525555e-01	k: 397967	n:1580000
KS ci ratio: 5.147116e-01	ci left: 2.732368e-05	ci right 4.674033e-05	k: 57	n:1580000
ZEB2   1580000 perm   1479 sec   (1069 perm/sec)   p_kst 3.607595e-05   p_cons 2.518778e-01   p_joint 9.873418e-05

Joint ci ratio: 3.118429e-01	ci left: 8.390132e-05	ci right 1.154515e-04	k: 157	n:1590000
Cons ci ratio: 5.358292e-03	ci left: 2.511613e-01	ci right 2.525113e-01	k: 400419	n:1590000
KS ci ratio: 5.147117e-01	ci left: 2.715183e-05	ci right 4.644636e-05	k: 57	n:1590000
ZEB2   1590000 perm   1495 sec   (1064 perm/sec)   p_kst 3.584906e-05   p_cons 2.518358e-01   p_joint 9.874214e-05

Joint ci ratio: 3.277921e-01	ci left: 7.475388e-05	ci right 1.046055e-04	k: 142	n:1600000
Cons ci ratio: 5.341259e-03	ci left: 2.511819e-01	ci right 2.525277e-01	k: 402967	n:1600000
KS ci ratio: 5.147117e-01	ci left: 2.698214e-05	ci right 4.615608e-05	k: 57	n:1600000
ZEB2   1600000 perm   1511 sec   (1059 perm/sec)   p_kst 3.562500e-05   p_cons 2.518544e-01   p_joint 8.875000e-05

Joint ci ratio: 3.233013e-01	ci left: 7.657105e-05	ci right 1.066425e-04	k: 146	n:1610000
Cons ci ratio: 5.324984e-03	ci left: 2.511601e-01	ci right 2.525017e-01	k: 405447	n:1610000
KS ci ratio: 5.103310e-01	ci left: 2.735529e-05	ci right 4.657022e-05	k: 58	n:1610000
ZEB2   1610000 perm   1527 sec   (1054 perm/sec)   p_kst 3.602484e-05   p_cons 2.518304e-01   p_joint 9.068323e-05

Joint ci ratio: 3.233014e-01	ci left: 7.609839e-05	ci right 1.059842e-04	k: 146	n:1620000
Cons ci ratio: 5.308021e-03	ci left: 2.511977e-01	ci right 2.525352e-01	k: 408023	n:1620000
KS ci ratio: 5.060603e-01	ci left: 2.772452e-05	ci right 4.697858e-05	k: 59	n:1620000
ZEB2   1620000 perm   1543 sec   (1050 perm/sec)   p_kst 3.641975e-05   p_cons 2.518660e-01   p_joint 9.012346e-05

Joint ci ratio: 3.222073e-01	ci left: 7.619533e-05	ci right 1.059971e-04	k: 147	n:1630000
Cons ci ratio: 5.291298e-03	ci left: 2.512294e-01	ci right 2.525629e-01	k: 410590	n:1630000
KS ci ratio: 5.060604e-01	ci left: 2.755443e-05	ci right 4.669037e-05	k: 59	n:1630000
ZEB2   1630000 perm   1560 sec   (1045 perm/sec)   p_kst 3.619632e-05   p_cons 2.518957e-01   p_joint 9.018405e-05

Joint ci ratio: 3.211242e-01	ci left: 7.629125e-05	ci right 1.060096e-04	k: 148	n:1640000
Cons ci ratio: 5.275679e-03	ci left: 2.511931e-01	ci right 2.525224e-01	k: 413046	n:1640000
KS ci ratio: 5.018951e-01	ci left: 2.791860e-05	ci right 4.709237e-05	k: 60	n:1640000
ZEB2   1640000 perm   1576 sec   (1041 perm/sec)   p_kst 3.658537e-05   p_cons 2.518573e-01   p_joint 9.024390e-05

Joint ci ratio: 3.211243e-01	ci left: 7.582888e-05	ci right 1.053671e-04	k: 148	n:1650000
Cons ci ratio: 5.259715e-03	ci left: 2.511917e-01	ci right 2.525170e-01	k: 415559	n:1650000
KS ci ratio: 5.018951e-01	ci left: 2.774940e-05	ci right 4.680696e-05	k: 60	n:1650000
ZEB2   1650000 perm   1592 sec   (1036 perm/sec)   p_kst 3.636364e-05   p_cons 2.518539e-01   p_joint 8.969697e-05

Joint ci ratio: 3.200521e-01	ci left: 7.592602e-05	ci right 1.053831e-04	k: 149	n:1660000
Cons ci ratio: 5.244012e-03	ci left: 2.511820e-01	ci right 2.525032e-01	k: 418058	n:1660000
KS ci ratio: 5.018952e-01	ci left: 2.758223e-05	ci right 4.652500e-05	k: 60	n:1660000
ZEB2   1660000 perm   1609 sec   (1032 perm/sec)   p_kst 3.614458e-05   p_cons 2.518422e-01   p_joint 8.975904e-05

Joint ci ratio: 3.189906e-01	ci left: 7.602216e-05	ci right 1.053987e-04	k: 150	n:1670000
Cons ci ratio: 5.227926e-03	ci left: 2.512100e-01	ci right 2.525274e-01	k: 420620	n:1670000
KS ci ratio: 4.978311e-01	ci left: 2.794033e-05	ci right 4.692015e-05	k: 61	n:1670000
ZEB2   1670000 perm   1626 sec   (1027 perm/sec)   p_kst 3.652695e-05   p_cons 2.518683e-01   p_joint 8.982036e-05

Joint ci ratio: 3.179395e-01	ci left: 7.611731e-05	ci right 1.054140e-04	k: 151	n:1680000
Cons ci ratio: 5.212374e-03	ci left: 2.512098e-01	ci right 2.525232e-01	k: 423135	n:1680000
KS ci ratio: 4.938642e-01	ci left: 2.829478e-05	ci right 4.730999e-05	k: 62	n:1680000
ZEB2   1680000 perm   1643 sec   (1023 perm/sec)   p_kst 3.690476e-05   p_cons 2.518661e-01   p_joint 8.988095e-05

Joint ci ratio: 3.179396e-01	ci left: 7.566691e-05	ci right 1.047902e-04	k: 151	n:1690000
Cons ci ratio: 5.196845e-03	ci left: 2.512179e-01	ci right 2.525274e-01	k: 425664	n:1690000
KS ci ratio: 4.938642e-01	ci left: 2.812736e-05	ci right 4.703005e-05	k: 62	n:1690000
ZEB2   1690000 perm   1659 sec   (1018 perm/sec)   p_kst 3.668639e-05   p_cons 2.518722e-01   p_joint 8.934911e-05

Joint ci ratio: 3.138367e-01	ci left: 7.738825e-05	ci right 1.067126e-04	k: 155	n:1700000
Cons ci ratio: 5.180994e-03	ci left: 2.512593e-01	ci right 2.525650e-01	k: 428250	n:1700000
KS ci ratio: 4.825091e-01	ci left: 2.950931e-05	ci right 4.873377e-05	k: 65	n:1700000
ZEB2   1700000 perm   1676 sec   (1014 perm/sec)   p_kst 3.823529e-05   p_cons 2.519118e-01   p_joint 9.117647e-05

Joint ci ratio: 3.128356e-01	ci left: 7.747450e-05	ci right 1.067192e-04	k: 156	n:1710000
Cons ci ratio: 5.165960e-03	ci left: 2.512512e-01	ci right 2.525531e-01	k: 430752	n:1710000
KS ci ratio: 4.825092e-01	ci left: 2.933674e-05	ci right 4.844877e-05	k: 65	n:1710000
ZEB2   1710000 perm   1693 sec   (1010 perm/sec)   p_kst 3.801170e-05   p_cons 2.519018e-01   p_joint 9.122807e-05

Joint ci ratio: 3.128357e-01	ci left: 7.702406e-05	ci right 1.060988e-04	k: 156	n:1720000
Cons ci ratio: 5.150611e-03	ci left: 2.512758e-01	ci right 2.525739e-01	k: 433310	n:1720000
KS ci ratio: 4.825092e-01	ci left: 2.916618e-05	ci right 4.816710e-05	k: 65	n:1720000
ZEB2   1720000 perm   1711 sec   (1006 perm/sec)   p_kst 3.779070e-05   p_cons 2.519244e-01   p_joint 9.069767e-05

Joint ci ratio: 3.108618e-01	ci left: 7.764445e-05	ci right 1.067317e-04	k: 158	n:1730000
Cons ci ratio: 5.135855e-03	ci left: 2.512665e-01	ci right 2.525609e-01	k: 435810	n:1730000
KS ci ratio: 4.825093e-01	ci left: 2.899759e-05	ci right 4.788868e-05	k: 65	n:1730000
ZEB2   1730000 perm   1728 sec   (1001 perm/sec)   p_kst 3.757225e-05   p_cons 2.519133e-01   p_joint 9.132948e-05

Joint ci ratio: 3.079699e-01	ci left: 7.878851e-05	ci right 1.079759e-04	k: 161	n:1740000
Cons ci ratio: 5.121115e-03	ci left: 2.512655e-01	ci right 2.525561e-01	k: 438324	n:1740000
KS ci ratio: 4.825094e-01	ci left: 2.883094e-05	ci right 4.761345e-05	k: 65	n:1740000
ZEB2   1740000 perm   1745 sec   (997 perm/sec)   p_kst 3.735632e-05   p_cons 2.519103e-01   p_joint 9.252874e-05

Joint ci ratio: 3.079699e-01	ci left: 7.833829e-05	ci right 1.073589e-04	k: 161	n:1750000
Cons ci ratio: 5.106069e-03	ci left: 2.512964e-01	ci right 2.525833e-01	k: 440894	n:1750000
KS ci ratio: 4.825094e-01	ci left: 2.866619e-05	ci right 4.734138e-05	k: 65	n:1750000
ZEB2   1750000 perm   1762 sec   (993 perm/sec)   p_kst 3.714286e-05   p_cons 2.519394e-01   p_joint 9.200000e-05

Joint ci ratio: 3.070238e-01	ci left: 7.841753e-05	ci right 1.073608e-04	k: 162	n:1760000
Cons ci ratio: 5.092090e-03	ci left: 2.512577e-01	ci right 2.525409e-01	k: 443342	n:1760000
KS ci ratio: 4.788950e-01	ci left: 2.900261e-05	ci right 4.770895e-05	k: 66	n:1760000
ZEB2   1760000 perm   1779 sec   (989 perm/sec)   p_kst 3.750000e-05   p_cons 2.518989e-01   p_joint 9.204545e-05

Joint ci ratio: 3.098891e-01	ci left: 7.641074e-05	ci right 1.049286e-04	k: 159	n:1770000
Cons ci ratio: 5.077762e-03	ci left: 2.512538e-01	ci right 2.525334e-01	k: 445851	n:1770000
KS ci ratio: 4.788950e-01	ci left: 2.883876e-05	ci right 4.743941e-05	k: 66	n:1770000
ZEB2   1770000 perm   1796 sec   (985 perm/sec)   p_kst 3.728814e-05   p_cons 2.518932e-01   p_joint 8.983051e-05

Joint ci ratio: 3.138373e-01	ci left: 7.391010e-05	ci right 1.019166e-04	k: 155	n:1780000
Cons ci ratio: 5.063530e-03	ci left: 2.512517e-01	ci right 2.525277e-01	k: 448363	n:1780000
KS ci ratio: 4.788951e-01	ci left: 2.867674e-05	ci right 4.717290e-05	k: 66	n:1780000
ZEB2   1780000 perm   1813 sec   (982 perm/sec)   p_kst 3.707865e-05   p_cons 2.518893e-01   p_joint 8.707865e-05

Joint ci ratio: 3.108623e-01	ci left: 7.504183e-05	ci right 1.031542e-04	k: 158	n:1790000
Cons ci ratio: 5.049291e-03	ci left: 2.512592e-01	ci right 2.525316e-01	k: 450892	n:1790000
KS ci ratio: 4.788951e-01	ci left: 2.851653e-05	ci right 4.690936e-05	k: 66	n:1790000
ZEB2   1790000 perm   1831 sec   (978 perm/sec)   p_kst 3.687151e-05   p_cons 2.518950e-01   p_joint 8.826816e-05

Joint ci ratio: 3.200532e-01	ci left: 7.002062e-05	ci right 9.718665e-05	k: 149	n:1800000
Cons ci ratio: 5.035208e-03	ci left: 2.512637e-01	ci right 2.525326e-01	k: 453416	n:1800000
KS ci ratio: 4.753607e-01	ci left: 2.884682e-05	ci right 4.727067e-05	k: 67	n:1800000
ZEB2   1800000 perm   1849 sec   (974 perm/sec)   p_kst 3.722222e-05   p_cons 2.518978e-01   p_joint 8.277778e-05

Joint ci ratio: 3.179405e-01	ci left: 7.065029e-05	ci right 9.784285e-05	k: 151	n:1810000
Cons ci ratio: 5.020286e-03	ci left: 2.513400e-01	ci right 2.526055e-01	k: 456070	n:1810000
KS ci ratio: 4.719034e-01	ci left: 2.917396e-05	ci right 4.762750e-05	k: 68	n:1810000
ZEB2   1810000 perm   1867 sec   (970 perm/sec)   p_kst 3.756906e-05   p_cons 2.519724e-01   p_joint 8.342541e-05

Joint ci ratio: 3.168998e-01	ci left: 7.076778e-05	ci right 9.789833e-05	k: 152	n:1820000
Cons ci ratio: 5.006634e-03	ci left: 2.513298e-01	ci right 2.525918e-01	k: 458568	n:1820000
KS ci ratio: 4.719035e-01	ci left: 2.901366e-05	ci right 4.736581e-05	k: 68	n:1820000
ZEB2   1820000 perm   1884 sec   (966 perm/sec)   p_kst 3.736264e-05   p_cons 2.519604e-01   p_joint 8.351648e-05

Joint ci ratio: 3.148486e-01	ci left: 7.138734e-05	ci right 9.854261e-05	k: 154	n:1830000
Cons ci ratio: 4.993287e-03	ci left: 2.513050e-01	ci right 2.525635e-01	k: 461039	n:1830000
KS ci ratio: 4.719035e-01	ci left: 2.885512e-05	ci right 4.710698e-05	k: 68	n:1830000
ZEB2   1830000 perm   1903 sec   (962 perm/sec)   p_kst 3.715847e-05   p_cons 2.519339e-01   p_joint 8.415301e-05

Joint ci ratio: 3.148486e-01	ci left: 7.099936e-05	ci right 9.800706e-05	k: 154	n:1840000
Cons ci ratio: 4.979789e-03	ci left: 2.513000e-01	ci right 2.525551e-01	k: 463546	n:1840000
KS ci ratio: 4.719036e-01	ci left: 2.869830e-05	ci right 4.685097e-05	k: 68	n:1840000
ZEB2   1840000 perm   1921 sec   (958 perm/sec)   p_kst 3.695652e-05   p_cons 2.519272e-01   p_joint 8.369565e-05

Joint ci ratio: 3.138379e-01	ci left: 7.111349e-05	ci right 9.806033e-05	k: 155	n:1850000
Cons ci ratio: 4.966834e-03	ci left: 2.512622e-01	ci right 2.525138e-01	k: 465992	n:1850000
KS ci ratio: 4.719036e-01	ci left: 2.854317e-05	ci right 4.659772e-05	k: 68	n:1850000
ZEB2   1850000 perm   1939 sec   (954 perm/sec)   p_kst 3.675676e-05   p_cons 2.518876e-01   p_joint 8.378378e-05

Joint ci ratio: 3.138379e-01	ci left: 7.073115e-05	ci right 9.753313e-05	k: 155	n:1860000
Cons ci ratio: 4.953089e-03	ci left: 2.512924e-01	ci right 2.525407e-01	k: 468564	n:1860000
KS ci ratio: 4.685207e-01	ci left: 2.886362e-05	ci right 4.694811e-05	k: 69	n:1860000
ZEB2   1860000 perm   1957 sec   (951 perm/sec)   p_kst 3.709677e-05   p_cons 2.519161e-01   p_joint 8.333333e-05

Joint ci ratio: 3.138380e-01	ci left: 7.035291e-05	ci right 9.701156e-05	k: 155	n:1870000
Cons ci ratio: 4.939485e-03	ci left: 2.513201e-01	ci right 2.525651e-01	k: 471132	n:1870000
KS ci ratio: 4.685207e-01	ci left: 2.870926e-05	ci right 4.669705e-05	k: 69	n:1870000
ZEB2   1870000 perm   1975 sec   (947 perm/sec)   p_kst 3.689840e-05   p_cons 2.519422e-01   p_joint 8.288770e-05

Joint ci ratio: 3.108630e-01	ci left: 7.144938e-05	ci right 9.821596e-05	k: 158	n:1880000
Cons ci ratio: 4.926327e-03	ci left: 2.513221e-01	ci right 2.525638e-01	k: 473652	n:1880000
KS ci ratio: 4.685208e-01	ci left: 2.855655e-05	ci right 4.644867e-05	k: 69	n:1880000
ZEB2   1880000 perm   1993 sec   (943 perm/sec)   p_kst 3.670213e-05   p_cons 2.519426e-01   p_joint 8.404255e-05

Joint ci ratio: 3.098900e-01	ci left: 7.155923e-05	ci right 9.826647e-05	k: 159	n:1890000
Cons ci ratio: 4.913025e-03	ci left: 2.513431e-01	ci right 2.525815e-01	k: 476208	n:1890000
KS ci ratio: 4.685208e-01	ci left: 2.840546e-05	ci right 4.620291e-05	k: 69	n:1890000
ZEB2   1890000 perm   2012 sec   (939 perm/sec)   p_kst 3.650794e-05   p_cons 2.519619e-01   p_joint 8.412698e-05

Joint ci ratio: 3.089261e-01	ci left: 7.166806e-05	ci right 9.831633e-05	k: 160	n:1900000
Cons ci ratio: 4.900220e-03	ci left: 2.513339e-01	ci right 2.525690e-01	k: 478707	n:1900000
KS ci ratio: 4.652096e-01	ci left: 2.872034e-05	ci right 4.654756e-05	k: 70	n:1900000
ZEB2   1900000 perm   2030 sec   (936 perm/sec)   p_kst 3.684211e-05   p_cons 2.519511e-01   p_joint 8.421053e-05

Joint ci ratio: 3.079711e-01	ci left: 7.177588e-05	ci right 9.836554e-05	k: 161	n:1910000
Cons ci ratio: 4.887039e-03	ci left: 2.513614e-01	ci right 2.525933e-01	k: 481276	n:1910000
KS ci ratio: 4.652096e-01	ci left: 2.856997e-05	ci right 4.630385e-05	k: 70	n:1910000
ZEB2   1910000 perm   2049 sec   (932 perm/sec)   p_kst 3.664921e-05   p_cons 2.519770e-01   p_joint 8.429319e-05

Joint ci ratio: 3.079712e-01	ci left: 7.140205e-05	ci right 9.785322e-05	k: 161	n:1920000
Cons ci ratio: 4.874173e-03	ci left: 2.513725e-01	ci right 2.526012e-01	k: 483814	n:1920000
KS ci ratio: 4.652097e-01	ci left: 2.842117e-05	ci right 4.606269e-05	k: 70	n:1920000
ZEB2   1920000 perm   2068 sec   (929 perm/sec)   p_kst 3.645833e-05   p_cons 2.519865e-01   p_joint 8.385417e-05

Joint ci ratio: 3.079713e-01	ci left: 7.103208e-05	ci right 9.734622e-05	k: 161	n:1930000
Cons ci ratio: 4.861141e-03	ci left: 2.514042e-01	ci right 2.526297e-01	k: 486392	n:1930000
KS ci ratio: 4.652097e-01	ci left: 2.827391e-05	ci right 4.582402e-05	k: 70	n:1930000
ZEB2   1930000 perm   2087 sec   (925 perm/sec)   p_kst 3.626943e-05   p_cons 2.520166e-01   p_joint 8.341969e-05

Joint ci ratio: 3.060876e-01	ci left: 7.161746e-05	ci right 9.795453e-05	k: 163	n:1940000
Cons ci ratio: 4.848412e-03	ci left: 2.514201e-01	ci right 2.526425e-01	k: 488940	n:1940000
KS ci ratio: 4.652098e-01	ci left: 2.812816e-05	ci right 4.558782e-05	k: 70	n:1940000
ZEB2   1940000 perm   2105 sec   (921 perm/sec)   p_kst 3.608247e-05   p_cons 2.520309e-01   p_joint 8.402062e-05

Joint ci ratio: 3.089264e-01	ci left: 6.983041e-05	ci right 9.579542e-05	k: 160	n:1950000
Cons ci ratio: 4.835670e-03	ci left: 2.514445e-01	ci right 2.526639e-01	k: 491505	n:1950000
KS ci ratio: 4.652098e-01	ci left: 2.798392e-05	ci right 4.535404e-05	k: 70	n:1950000
ZEB2   1950000 perm   2124 sec   (918 perm/sec)   p_kst 3.589744e-05   p_cons 2.520538e-01   p_joint 8.205128e-05

Joint ci ratio: 3.089265e-01	ci left: 6.947413e-05	ci right 9.530667e-05	k: 160	n:1960000
Cons ci ratio: 4.823230e-03	ci left: 2.514530e-01	ci right 2.526692e-01	k: 494039	n:1960000
KS ci ratio: 4.619678e-01	ci left: 2.829173e-05	ci right 4.569205e-05	k: 71	n:1960000
ZEB2   1960000 perm   2143 sec   (915 perm/sec)   p_kst 3.622449e-05   p_cons 2.520607e-01   p_joint 8.163265e-05

Joint ci ratio: 3.070253e-01	ci left: 7.005825e-05	ci right 9.591631e-05	k: 162	n:1970000
Cons ci ratio: 4.810116e-03	ci left: 2.515217e-01	ci right 2.527349e-01	k: 496692	n:1970000
KS ci ratio: 4.619679e-01	ci left: 2.814812e-05	ci right 4.546011e-05	k: 71	n:1970000
ZEB2   1970000 perm   2162 sec   (911 perm/sec)   p_kst 3.604061e-05   p_cons 2.521279e-01   p_joint 8.223350e-05

Joint ci ratio: 3.060878e-01	ci left: 7.017063e-05	ci right 9.597566e-05	k: 163	n:1980000
Cons ci ratio: 4.797846e-03	ci left: 2.515316e-01	ci right 2.527418e-01	k: 499230	n:1980000
KS ci ratio: 4.587927e-01	ci left: 2.845241e-05	ci right 4.579377e-05	k: 72	n:1980000
ZEB2   1980000 perm   2181 sec   (908 perm/sec)   p_kst 3.636364e-05   p_cons 2.521364e-01   p_joint 8.232323e-05

Joint ci ratio: 3.089267e-01	ci left: 6.842678e-05	ci right 9.386989e-05	k: 160	n:1990000
Cons ci ratio: 4.785555e-03	ci left: 2.515505e-01	ci right 2.527577e-01	k: 501786	n:1990000
KS ci ratio: 4.587928e-01	ci left: 2.830943e-05	ci right 4.556365e-05	k: 72	n:1990000
ZEB2   1990000 perm   2200 sec   (905 perm/sec)   p_kst 3.618090e-05   p_cons 2.521538e-01   p_joint 8.040201e-05

Joint ci ratio: 3.089268e-01	ci left: 6.808464e-05	ci right 9.340055e-05	k: 160	n:2000000
Cons ci ratio: 4.773649e-03	ci left: 2.515463e-01	ci right 2.527504e-01	k: 504296	n:2000000
KS ci ratio: 4.587928e-01	ci left: 2.816789e-05	ci right 4.533583e-05	k: 72	n:2000000
ZEB2   2000000 perm   2219 sec   (901 perm/sec)   p_kst 3.600000e-05   p_cons 2.521480e-01   p_joint 8.000000e-05

Joint ci ratio: 3.089268e-01	ci left: 6.774591e-05	ci right 9.293587e-05	k: 160	n:2010000
Cons ci ratio: 4.762291e-03	ci left: 2.515058e-01	ci right 2.527069e-01	k: 506733	n:2010000
KS ci ratio: 4.587929e-01	ci left: 2.802775e-05	ci right 4.511028e-05	k: 72	n:2010000
ZEB2   2010000 perm   2239 sec   (898 perm/sec)   p_kst 3.582090e-05   p_cons 2.521060e-01   p_joint 7.960199e-05

Joint ci ratio: 3.089269e-01	ci left: 6.741053e-05	ci right 9.247580e-05	k: 160	n:2020000
Cons ci ratio: 4.751062e-03	ci left: 2.514617e-01	ci right 2.526598e-01	k: 509162	n:2020000
KS ci ratio: 4.587929e-01	ci left: 2.788900e-05	ci right 4.488696e-05	k: 72	n:2020000
ZEB2   2020000 perm   2258 sec   (894 perm/sec)   p_kst 3.564356e-05   p_cons 2.520604e-01   p_joint 7.920792e-05

Joint ci ratio: 3.070257e-01	ci left: 6.798756e-05	ci right 9.308137e-05	k: 162	n:2030000
Cons ci ratio: 4.738761e-03	ci left: 2.515097e-01	ci right 2.527048e-01	k: 511777	n:2030000
KS ci ratio: 4.556823e-01	ci left: 2.818747e-05	ci right 4.521484e-05	k: 73	n:2030000
ZEB2   2030000 perm   2278 sec   (891 perm/sec)   p_kst 3.596059e-05   p_cons 2.521069e-01   p_joint 7.980296e-05

Joint ci ratio: 3.060882e-01	ci left: 6.810678e-05	ci right 9.315287e-05	k: 163	n:2040000
Cons ci ratio: 4.726703e-03	ci left: 2.515454e-01	ci right 2.527377e-01	k: 514368	n:2040000
KS ci ratio: 4.526342e-01	ci left: 2.848340e-05	ci right 4.553911e-05	k: 74	n:2040000
ZEB2   2040000 perm   2298 sec   (888 perm/sec)   p_kst 3.627451e-05   p_cons 2.521412e-01   p_joint 7.990196e-05

Joint ci ratio: 3.051592e-01	ci left: 6.822495e-05	ci right 9.322356e-05	k: 164	n:2050000
Cons ci ratio: 4.715389e-03	ci left: 2.515286e-01	ci right 2.527179e-01	k: 516852	n:2050000
KS ci ratio: 4.526342e-01	ci left: 2.834445e-05	ci right 4.531697e-05	k: 74	n:2050000
ZEB2   2050000 perm   2317 sec   (885 perm/sec)   p_kst 3.609756e-05   p_cons 2.521229e-01   p_joint 8.000000e-05

Joint ci ratio: 3.098911e-01	ci left: 6.565383e-05	ci right 9.015716e-05	k: 159	n:2060000
Cons ci ratio: 4.704524e-03	ci left: 2.514824e-01	ci right 2.526688e-01	k: 519275	n:2060000
KS ci ratio: 4.496464e-01	ci left: 2.863712e-05	ci right 4.563724e-05	k: 75	n:2060000
ZEB2   2060000 perm   2337 sec   (882 perm/sec)   p_kst 3.640777e-05   p_cons 2.520752e-01   p_joint 7.718447e-05

Joint ci ratio: 3.158708e-01	ci left: 6.266564e-05	ci right 8.659625e-05	k: 153	n:2070000
Cons ci ratio: 4.693134e-03	ci left: 2.514849e-01	ci right 2.526684e-01	k: 521798	n:2070000
KS ci ratio: 4.496465e-01	ci left: 2.849878e-05	ci right 4.541677e-05	k: 75	n:2070000
ZEB2   2070000 perm   2357 sec   (878 perm/sec)   p_kst 3.623188e-05   p_cons 2.520763e-01   p_joint 7.391304e-05

Joint ci ratio: 3.158708e-01	ci left: 6.236436e-05	ci right 8.617993e-05	k: 153	n:2080000
Cons ci ratio: 4.681449e-03	ci left: 2.515177e-01	ci right 2.526984e-01	k: 524384	n:2080000
KS ci ratio: 4.496465e-01	ci left: 2.836176e-05	ci right 4.519842e-05	k: 75	n:2080000
ZEB2   2080000 perm   2377 sec   (875 perm/sec)   p_kst 3.605769e-05   p_cons 2.521077e-01   p_joint 7.355769e-05

Joint ci ratio: 3.158709e-01	ci left: 6.206596e-05	ci right 8.576759e-05	k: 153	n:2090000
Cons ci ratio: 4.670805e-03	ci left: 2.514732e-01	ci right 2.526510e-01	k: 526809	n:2090000
KS ci ratio: 4.496466e-01	ci left: 2.822606e-05	ci right 4.498216e-05	k: 75	n:2090000
ZEB2   2090000 perm   2397 sec   (872 perm/sec)   p_kst 3.588517e-05   p_cons 2.520617e-01   p_joint 7.320574e-05

Joint ci ratio: 3.148503e-01	ci left: 6.220892e-05	ci right 8.587292e-05	k: 154	n:2100000
Cons ci ratio: 4.659604e-03	ci left: 2.514800e-01	ci right 2.526550e-01	k: 529341	n:2100000
KS ci ratio: 4.467172e-01	ci left: 2.851408e-05	ci right 4.529757e-05	k: 76	n:2100000
ZEB2   2100000 perm   2416 sec   (869 perm/sec)   p_kst 3.619048e-05   p_cons 2.520671e-01   p_joint 7.333333e-05

Joint ci ratio: 3.138395e-01	ci left: 6.235064e-05	ci right 8.597714e-05	k: 155	n:2110000
Cons ci ratio: 4.648641e-03	ci left: 2.514740e-01	ci right 2.526462e-01	k: 531846	n:2110000
KS ci ratio: 4.438443e-01	ci left: 2.879972e-05	ci right 4.560964e-05	k: 77	n:2110000
ZEB2   2110000 perm   2437 sec   (866 perm/sec)   p_kst 3.649289e-05   p_cons 2.520597e-01   p_joint 7.345972e-05

Joint ci ratio: 3.138396e-01	ci left: 6.205653e-05	ci right 8.557159e-05	k: 155	n:2120000
Cons ci ratio: 4.638022e-03	ci left: 2.514463e-01	ci right 2.526157e-01	k: 534305	n:2120000
KS ci ratio: 4.438443e-01	ci left: 2.866387e-05	ci right 4.539451e-05	k: 77	n:2120000
ZEB2   2120000 perm   2457 sec   (863 perm/sec)   p_kst 3.632075e-05   p_cons 2.520307e-01   p_joint 7.311321e-05

Joint ci ratio: 3.128385e-01	ci left: 6.219776e-05	ci right 8.567613e-05	k: 156	n:2130000
Cons ci ratio: 4.627014e-03	ci left: 2.514565e-01	ci right 2.526231e-01	k: 536844	n:2130000
KS ci ratio: 4.382610e-01	ci left: 2.936398e-05	ci right 4.622400e-05	k: 79	n:2130000
ZEB2   2130000 perm   2477 sec   (860 perm/sec)   p_kst 3.708920e-05   p_cons 2.520394e-01   p_joint 7.323944e-05

Joint ci ratio: 3.118469e-01	ci left: 6.233778e-05	ci right 8.577957e-05	k: 157	n:2140000
Cons ci ratio: 4.616135e-03	ci left: 2.514623e-01	ci right 2.526262e-01	k: 539374	n:2140000
KS ci ratio: 4.382610e-01	ci left: 2.922676e-05	ci right 4.600800e-05	k: 79	n:2140000
ZEB2   2140000 perm   2498 sec   (857 perm/sec)   p_kst 3.691589e-05   p_cons 2.520439e-01   p_joint 7.336449e-05

Joint ci ratio: 3.118469e-01	ci left: 6.204784e-05	ci right 8.538060e-05	k: 157	n:2150000
Cons ci ratio: 4.605345e-03	ci left: 2.514672e-01	ci right 2.526284e-01	k: 541902	n:2150000
KS ci ratio: 4.382611e-01	ci left: 2.909082e-05	ci right 4.579401e-05	k: 79	n:2150000
ZEB2   2150000 perm   2518 sec   (854 perm/sec)   p_kst 3.674419e-05   p_cons 2.520474e-01   p_joint 7.302326e-05

Joint ci ratio: 3.108647e-01	ci left: 6.218737e-05	ci right 8.548434e-05	k: 158	n:2160000
Cons ci ratio: 4.594567e-03	ci left: 2.514771e-01	ci right 2.526356e-01	k: 544441	n:2160000
KS ci ratio: 4.355473e-01	ci left: 2.936817e-05	ci right 4.609559e-05	k: 80	n:2160000
ZEB2   2160000 perm   2539 sec   (851 perm/sec)   p_kst 3.703704e-05   p_cons 2.520560e-01   p_joint 7.314815e-05

Joint ci ratio: 3.108648e-01	ci left: 6.190079e-05	ci right 8.509040e-05	k: 158	n:2170000
Cons ci ratio: 4.583686e-03	ci left: 2.515016e-01	ci right 2.526575e-01	k: 547012	n:2170000
KS ci ratio: 4.355473e-01	ci left: 2.923284e-05	ci right 4.588317e-05	k: 80	n:2170000
ZEB2   2170000 perm   2559 sec   (848 perm/sec)   p_kst 3.686636e-05   p_cons 2.520793e-01   p_joint 7.281106e-05

Joint ci ratio: 3.098918e-01	ci left: 6.203984e-05	ci right 8.519441e-05	k: 159	n:2180000
Cons ci ratio: 4.572570e-03	ci left: 2.515517e-01	ci right 2.527050e-01	k: 549639	n:2180000
KS ci ratio: 4.355474e-01	ci left: 2.909874e-05	ci right 4.567270e-05	k: 80	n:2180000
ZEB2   2180000 perm   2581 sec   (845 perm/sec)   p_kst 3.669725e-05   p_cons 2.521280e-01   p_joint 7.293578e-05

Joint ci ratio: 3.098918e-01	ci left: 6.175655e-05	ci right 8.480540e-05	k: 159	n:2190000
Cons ci ratio: 4.562231e-03	ci left: 2.515437e-01	ci right 2.526944e-01	k: 552140	n:2190000
KS ci ratio: 4.355474e-01	ci left: 2.896587e-05	ci right 4.546415e-05	k: 80	n:2190000
ZEB2   2190000 perm   2602 sec   (842 perm/sec)   p_kst 3.652968e-05   p_cons 2.521187e-01   p_joint 7.260274e-05

Joint ci ratio: 3.089279e-01	ci left: 6.189510e-05	ci right 8.490964e-05	k: 160	n:2200000
Cons ci ratio: 4.551802e-03	ci left: 2.515490e-01	ci right 2.526971e-01	k: 554670	n:2200000
KS ci ratio: 4.328834e-01	ci left: 2.923906e-05	ci right 4.576143e-05	k: 81	n:2200000
ZEB2   2200000 perm   2623 sec   (839 perm/sec)   p_kst 3.681818e-05   p_cons 2.521227e-01   p_joint 7.272727e-05

Joint ci ratio: 3.060891e-01	ci left: 6.286777e-05	ci right 8.598731e-05	k: 163	n:2210000
Cons ci ratio: 4.541575e-03	ci left: 2.515434e-01	ci right 2.526889e-01	k: 557176	n:2210000
KS ci ratio: 4.302677e-01	ci left: 2.951008e-05	ci right 4.605573e-05	k: 82	n:2210000
ZEB2   2210000 perm   2644 sec   (836 perm/sec)   p_kst 3.710407e-05   p_cons 2.521158e-01   p_joint 7.375566e-05

Joint ci ratio: 3.060892e-01	ci left: 6.258458e-05	ci right 8.559998e-05	k: 163	n:2220000
Cons ci ratio: 4.531384e-03	ci left: 2.515406e-01	ci right 2.526835e-01	k: 559688	n:2220000
KS ci ratio: 4.302678e-01	ci left: 2.937715e-05	ci right 4.584827e-05	k: 82	n:2220000
ZEB2   2220000 perm   2665 sec   (833 perm/sec)   p_kst 3.693694e-05   p_cons 2.521117e-01   p_joint 7.342342e-05

Joint ci ratio: 3.042396e-01	ci left: 6.313213e-05	ci right 8.618144e-05	k: 165	n:2230000
Cons ci ratio: 4.521428e-03	ci left: 2.515239e-01	ci right 2.526642e-01	k: 562169	n:2230000
KS ci ratio: 4.302678e-01	ci left: 2.924541e-05	ci right 4.564268e-05	k: 82	n:2230000
ZEB2   2230000 perm   2686 sec   (830 perm/sec)   p_kst 3.677130e-05   p_cons 2.520937e-01   p_joint 7.399103e-05

Joint ci ratio: 3.033273e-01	ci left: 6.326270e-05	ci right 8.627705e-05	k: 166	n:2240000
Cons ci ratio: 4.511015e-03	ci left: 2.515511e-01	ci right 2.526888e-01	k: 564748	n:2240000
KS ci ratio: 4.302678e-01	ci left: 2.911485e-05	ci right 4.543892e-05	k: 82	n:2240000
ZEB2   2240000 perm   2708 sec   (827 perm/sec)   p_kst 3.660714e-05   p_cons 2.521196e-01   p_joint 7.410714e-05

Joint ci ratio: 3.024232e-01	ci left: 6.339220e-05	ci right 8.637171e-05	k: 167	n:2250000
Cons ci ratio: 4.500858e-03	ci left: 2.515625e-01	ci right 2.526977e-01	k: 567292	n:2250000
KS ci ratio: 4.302679e-01	ci left: 2.898545e-05	ci right 4.523697e-05	k: 82	n:2250000
ZEB2   2250000 perm   2730 sec   (824 perm/sec)   p_kst 3.644444e-05   p_cons 2.521298e-01   p_joint 7.422222e-05

Joint ci ratio: 3.024233e-01	ci left: 6.311171e-05	ci right 8.598954e-05	k: 167	n:2260000
Cons ci ratio: 4.491054e-03	ci left: 2.515499e-01	ci right 2.526826e-01	k: 569782	n:2260000
KS ci ratio: 4.302679e-01	ci left: 2.885720e-05	ci right 4.503680e-05	k: 82	n:2260000
ZEB2   2260000 perm   2751 sec   (822 perm/sec)   p_kst 3.628319e-05   p_cons 2.521159e-01   p_joint 7.389381e-05

Joint ci ratio: 3.042398e-01	ci left: 6.201966e-05	ci right 8.466283e-05	k: 165	n:2270000
Cons ci ratio: 4.480943e-03	ci left: 2.515687e-01	ci right 2.526989e-01	k: 572343	n:2270000
KS ci ratio: 4.276991e-01	ci left: 2.912303e-05	ci right 4.532623e-05	k: 83	n:2270000
ZEB2   2270000 perm   2773 sec   (819 perm/sec)   p_kst 3.656388e-05   p_cons 2.521335e-01   p_joint 7.268722e-05

Joint ci ratio: 3.033275e-01	ci left: 6.215282e-05	ci right 8.476343e-05	k: 166	n:2280000
Cons ci ratio: 4.471211e-03	ci left: 2.515610e-01	ci right 2.526887e-01	k: 574844	n:2280000
KS ci ratio: 4.276991e-01	ci left: 2.899529e-05	ci right 4.512743e-05	k: 83	n:2280000
ZEB2   2280000 perm   2795 sec   (816 perm/sec)   p_kst 3.640351e-05   p_cons 2.521246e-01   p_joint 7.280702e-05

Joint ci ratio: 3.024234e-01	ci left: 6.228491e-05	ci right 8.486304e-05	k: 167	n:2290000
Cons ci ratio: 4.461744e-03	ci left: 2.515364e-01	ci right 2.526616e-01	k: 577306	n:2290000
KS ci ratio: 4.276991e-01	ci left: 2.886868e-05	ci right 4.493037e-05	k: 83	n:2290000
ZEB2   2290000 perm   2816 sec   (813 perm/sec)   p_kst 3.624454e-05   p_cons 2.520987e-01   p_joint 7.292576e-05

Joint ci ratio: 3.024235e-01	ci left: 6.201411e-05	ci right 8.449408e-05	k: 167	n:2300000
Cons ci ratio: 4.451988e-03	ci left: 2.515415e-01	ci right 2.526643e-01	k: 579836	n:2300000
KS ci ratio: 4.276992e-01	ci left: 2.874316e-05	ci right 4.473502e-05	k: 83	n:2300000
ZEB2   2300000 perm   2838 sec   (810 perm/sec)   p_kst 3.608696e-05   p_cons 2.521026e-01   p_joint 7.260870e-05

Joint ci ratio: 3.015274e-01	ci left: 6.214575e-05	ci right 8.459390e-05	k: 168	n:2310000
Cons ci ratio: 4.442168e-03	ci left: 2.515574e-01	ci right 2.526778e-01	k: 582391	n:2310000
KS ci ratio: 4.276992e-01	ci left: 2.861873e-05	ci right 4.454136e-05	k: 83	n:2310000
ZEB2   2310000 perm   2860 sec   (808 perm/sec)   p_kst 3.593074e-05   p_cons 2.521173e-01   p_joint 7.272727e-05

Joint ci ratio: 3.006392e-01	ci left: 6.227636e-05	ci right 8.469277e-05	k: 169	n:2320000
Cons ci ratio: 4.432200e-03	ci left: 2.515913e-01	ci right 2.527093e-01	k: 584988	n:2320000
KS ci ratio: 4.276992e-01	ci left: 2.849537e-05	ci right 4.434937e-05	k: 83	n:2320000
ZEB2   2320000 perm   2882 sec   (805 perm/sec)   p_kst 3.577586e-05   p_cons 2.521500e-01   p_joint 7.284483e-05

Joint ci ratio: 3.006392e-01	ci left: 6.200908e-05	ci right 8.432928e-05	k: 169	n:2330000
Cons ci ratio: 4.422424e-03	ci left: 2.516142e-01	ci right 2.527298e-01	k: 587560	n:2330000
KS ci ratio: 4.276993e-01	ci left: 2.837307e-05	ci right 4.415903e-05	k: 83	n:2330000
ZEB2   2330000 perm   2904 sec   (802 perm/sec)   p_kst 3.562232e-05   p_cons 2.521717e-01   p_joint 7.253219e-05

Joint ci ratio: 2.997589e-01	ci left: 6.213925e-05	ci right 8.442834e-05	k: 170	n:2340000
Cons ci ratio: 4.413088e-03	ci left: 2.516048e-01	ci right 2.527180e-01	k: 590057	n:2340000
KS ci ratio: 4.276993e-01	ci left: 2.825182e-05	ci right 4.397032e-05	k: 83	n:2340000
ZEB2   2340000 perm   2926 sec   (800 perm/sec)   p_kst 3.547009e-05   p_cons 2.521611e-01   p_joint 7.264957e-05

Joint ci ratio: 2.997589e-01	ci left: 6.187483e-05	ci right 8.406907e-05	k: 170	n:2350000
Cons ci ratio: 4.403289e-03	ci left: 2.516402e-01	ci right 2.527511e-01	k: 592659	n:2350000
KS ci ratio: 4.276993e-01	ci left: 2.813160e-05	ci right 4.378321e-05	k: 83	n:2350000
ZEB2   2350000 perm   2949 sec   (797 perm/sec)   p_kst 3.531915e-05   p_cons 2.521953e-01   p_joint 7.234043e-05

Joint ci ratio: 2.997590e-01	ci left: 6.161265e-05	ci right 8.371285e-05	k: 170	n:2360000
Cons ci ratio: 4.393654e-03	ci left: 2.516668e-01	ci right 2.527754e-01	k: 595241	n:2360000
KS ci ratio: 4.276994e-01	ci left: 2.801240e-05	ci right 4.359769e-05	k: 83	n:2360000
ZEB2   2360000 perm   2971 sec   (794 perm/sec)   p_kst 3.516949e-05   p_cons 2.522208e-01   p_joint 7.203390e-05

Joint ci ratio: 2.997590e-01	ci left: 6.135268e-05	ci right 8.335963e-05	k: 170	n:2370000
Cons ci ratio: 4.384587e-03	ci left: 2.516497e-01	ci right 2.527559e-01	k: 597720	n:2370000
KS ci ratio: 4.251760e-01	ci left: 2.827085e-05	ci right 4.388071e-05	k: 84	n:2370000
ZEB2   2370000 perm   2993 sec   (792 perm/sec)   p_kst 3.544304e-05   p_cons 2.522025e-01   p_joint 7.172996e-05

Joint ci ratio: 2.980212e-01	ci left: 6.187223e-05	ci right 8.391254e-05	k: 172	n:2380000
Cons ci ratio: 4.375624e-03	ci left: 2.516286e-01	ci right 2.527325e-01	k: 600189	n:2380000
KS ci ratio: 4.226967e-01	ci left: 2.852740e-05	ci right 4.416108e-05	k: 85	n:2380000
ZEB2   2380000 perm   3016 sec   (789 perm/sec)   p_kst 3.571429e-05   p_cons 2.521803e-01   p_joint 7.226891e-05

Joint ci ratio: 2.980212e-01	ci left: 6.161335e-05	ci right 8.356144e-05	k: 172	n:2390000
Cons ci ratio: 4.366542e-03	ci left: 2.516228e-01	ci right 2.527243e-01	k: 602694	n:2390000
KS ci ratio: 4.226968e-01	ci left: 2.840804e-05	ci right 4.397631e-05	k: 85	n:2390000
ZEB2   2390000 perm   3038 sec   (787 perm/sec)   p_kst 3.556485e-05   p_cons 2.521732e-01   p_joint 7.196653e-05

Joint ci ratio: 2.980213e-01	ci left: 6.135662e-05	ci right 8.321327e-05	k: 172	n:2400000
Cons ci ratio: 4.357603e-03	ci left: 2.516094e-01	ci right 2.527087e-01	k: 605181	n:2400000
KS ci ratio: 4.226968e-01	ci left: 2.828967e-05	ci right 4.379307e-05	k: 85	n:2400000
ZEB2   2400000 perm   3061 sec   (784 perm/sec)   p_kst 3.541667e-05   p_cons 2.521587e-01   p_joint 7.166667e-05

Joint ci ratio: 2.938055e-01	ci left: 6.302274e-05	ci right 8.509622e-05	k: 177	n:2410000
Cons ci ratio: 4.348421e-03	ci left: 2.516220e-01	ci right 2.527189e-01	k: 607730	n:2410000
KS ci ratio: 4.202604e-01	ci left: 2.854321e-05	ci right 4.407006e-05	k: 86	n:2410000
ZEB2   2410000 perm   3084 sec   (781 perm/sec)   p_kst 3.568465e-05   p_cons 2.521701e-01   p_joint 7.344398e-05

Joint ci ratio: 2.921686e-01	ci left: 6.352804e-05	ci right 8.563159e-05	k: 179	n:2420000
Cons ci ratio: 4.339526e-03	ci left: 2.516145e-01	ci right 2.527092e-01	k: 610231	n:2420000
KS ci ratio: 4.155114e-01	ci left: 2.916480e-05	ci right 4.480083e-05	k: 88	n:2420000
ZEB2   2420000 perm   3107 sec   (779 perm/sec)   p_kst 3.636364e-05   p_cons 2.521616e-01   p_joint 7.396694e-05

Joint ci ratio: 2.913604e-01	ci left: 6.364801e-05	ci right 8.572075e-05	k: 180	n:2430000
Cons ci ratio: 4.330889e-03	ci left: 2.515895e-01	ci right 2.526819e-01	k: 612689	n:2430000
KS ci ratio: 4.155115e-01	ci left: 2.904478e-05	ci right 4.461646e-05	k: 88	n:2430000
ZEB2   2430000 perm   3130 sec   (776 perm/sec)   p_kst 3.621399e-05   p_cons 2.521354e-01   p_joint 7.407407e-05

Joint ci ratio: 2.905588e-01	ci left: 6.376709e-05	ci right 8.580909e-05	k: 181	n:2440000
Cons ci ratio: 4.322025e-03	ci left: 2.515888e-01	ci right 2.526790e-01	k: 615206	n:2440000
KS ci ratio: 4.131966e-01	ci left: 2.929285e-05	ci right 4.488594e-05	k: 89	n:2440000
ZEB2   2440000 perm   3153 sec   (774 perm/sec)   p_kst 3.647541e-05   p_cons 2.521336e-01   p_joint 7.418033e-05

Joint ci ratio: 2.905589e-01	ci left: 6.350682e-05	ci right 8.545885e-05	k: 181	n:2450000
Cons ci ratio: 4.313085e-03	ci left: 2.515996e-01	ci right 2.526875e-01	k: 617751	n:2450000
KS ci ratio: 4.109199e-01	ci left: 2.953913e-05	ci right 4.515299e-05	k: 90	n:2450000
ZEB2   2450000 perm   3176 sec   (772 perm/sec)   p_kst 3.673469e-05   p_cons 2.521433e-01   p_joint 7.387755e-05

Joint ci ratio: 2.881932e-01	ci left: 6.437967e-05	ci right 8.641923e-05	k: 184	n:2460000
Cons ci ratio: 4.304275e-03	ci left: 2.516038e-01	ci right 2.526895e-01	k: 620280	n:2460000
KS ci ratio: 4.086805e-01	ci left: 2.978365e-05	ci right 4.541763e-05	k: 91	n:2460000
ZEB2   2460000 perm   3199 sec   (769 perm/sec)   p_kst 3.699187e-05   p_cons 2.521463e-01   p_joint 7.479675e-05

Joint ci ratio: 2.866479e-01	ci left: 6.487038e-05	ci right 8.693728e-05	k: 186	n:2470000
Cons ci ratio: 4.295532e-03	ci left: 2.516067e-01	ci right 2.526902e-01	k: 622806	n:2470000
KS ci ratio: 4.043094e-01	ci left: 3.038998e-05	ci right 4.612583e-05	k: 93	n:2470000
ZEB2   2470000 perm   3222 sec   (767 perm/sec)   p_kst 3.765182e-05   p_cons 2.521482e-01   p_joint 7.530364e-05

Joint ci ratio: 2.866479e-01	ci left: 6.460881e-05	ci right 8.658673e-05	k: 186	n:2480000
Cons ci ratio: 4.286677e-03	ci left: 2.516241e-01	ci right 2.527055e-01	k: 625368	n:2480000
KS ci ratio: 4.043094e-01	ci left: 3.026744e-05	ci right 4.593984e-05	k: 93	n:2480000
ZEB2   2480000 perm   3246 sec   (764 perm/sec)   p_kst 3.750000e-05   p_cons 2.521645e-01   p_joint 7.500000e-05

Joint ci ratio: 2.851272e-01	ci left: 6.509496e-05	ci right 8.709963e-05	k: 188	n:2490000
Cons ci ratio: 4.277963e-03	ci left: 2.516338e-01	ci right 2.527130e-01	k: 627911	n:2490000
KS ci ratio: 4.021758e-01	ci left: 3.050676e-05	ci right 4.619747e-05	k: 94	n:2490000
ZEB2   2490000 perm   3269 sec   (762 perm/sec)   p_kst 3.775100e-05   p_cons 2.521731e-01   p_joint 7.550201e-05

Joint ci ratio: 2.843758e-01	ci left: 6.520602e-05	ci right 8.717972e-05	k: 189	n:2500000
Cons ci ratio: 4.269642e-03	ci left: 2.516134e-01	ci right 2.526904e-01	k: 630379	n:2500000
KS ci ratio: 4.021758e-01	ci left: 3.038473e-05	ci right 4.601268e-05	k: 94	n:2500000
ZEB2   2500000 perm   3293 sec   (759 perm/sec)   p_kst 3.760000e-05   p_cons 2.521516e-01   p_joint 7.560000e-05

Joint ci ratio: 2.866481e-01	ci left: 6.383658e-05	ci right 8.555183e-05	k: 186	n:2510000
Cons ci ratio: 4.260942e-03	ci left: 2.516310e-01	ci right 2.527058e-01	k: 632942	n:2510000
KS ci ratio: 4.021758e-01	ci left: 3.026368e-05	ci right 4.582937e-05	k: 94	n:2510000
ZEB2   2510000 perm   3317 sec   (757 perm/sec)   p_kst 3.745020e-05   p_cons 2.521681e-01   p_joint 7.410359e-05

Joint ci ratio: 2.866481e-01	ci left: 6.358326e-05	ci right 8.521234e-05	k: 186	n:2520000
Cons ci ratio: 4.252576e-03	ci left: 2.516235e-01	ci right 2.526962e-01	k: 635442	n:2520000
KS ci ratio: 4.021759e-01	ci left: 3.014358e-05	ci right 4.564751e-05	k: 94	n:2520000
ZEB2   2520000 perm   3341 sec   (754 perm/sec)   p_kst 3.730159e-05   p_cons 2.521595e-01   p_joint 7.380952e-05

Joint ci ratio: 2.889757e-01	ci left: 6.223176e-05	ci right 8.360442e-05	k: 183	n:2530000
Cons ci ratio: 4.244611e-03	ci left: 2.515848e-01	ci right 2.526553e-01	k: 637863	n:2530000
KS ci ratio: 4.000757e-01	ci left: 3.037982e-05	ci right 4.590201e-05	k: 95	n:2530000
ZEB2   2530000 perm   3365 sec   (752 perm/sec)   p_kst 3.754941e-05   p_cons 2.521198e-01   p_joint 7.233202e-05

Joint ci ratio: 2.866482e-01	ci left: 6.308261e-05	ci right 8.454138e-05	k: 186	n:2540000
Cons ci ratio: 4.236686e-03	ci left: 2.515468e-01	ci right 2.526152e-01	k: 640285	n:2540000
KS ci ratio: 3.980080e-01	ci left: 3.061440e-05	ci right 4.615431e-05	k: 96	n:2540000
ZEB2   2540000 perm   3389 sec   (749 perm/sec)   p_kst 3.779528e-05   p_cons 2.520807e-01   p_joint 7.322835e-05

Joint ci ratio: 2.929842e-01	ci left: 5.992596e-05	ci right 8.084523e-05	k: 178	n:2550000
Cons ci ratio: 4.228365e-03	ci left: 2.515483e-01	ci right 2.526146e-01	k: 642807	n:2550000
KS ci ratio: 3.959721e-01	ci left: 3.084735e-05	ci right 4.640442e-05	k: 97	n:2550000
ZEB2   2550000 perm   3413 sec   (747 perm/sec)   p_kst 3.803922e-05   p_cons 2.520812e-01   p_joint 6.980392e-05

Joint ci ratio: 2.177640e-01	ci left: 1.127865e-04	ci right 1.407086e-04	k: 323	n:2560000
Cons ci ratio: 4.220282e-03	ci left: 2.515330e-01	ci right 2.525972e-01	k: 645286	n:2560000
KS ci ratio: 3.900468e-01	ci left: 3.178292e-05	ci right 4.751027e-05	k: 100	n:2560000
ZEB2   2560000 perm   3437 sec   (745 perm/sec)   p_kst 3.906250e-05   p_cons 2.520648e-01   p_joint 1.261719e-04

Joint ci ratio: 2.177640e-01	ci left: 1.123477e-04	ci right 1.401611e-04	k: 323	n:2570000
Cons ci ratio: 4.211740e-03	ci left: 2.515630e-01	ci right 2.526251e-01	k: 647881	n:2570000
KS ci ratio: 3.900468e-01	ci left: 3.165925e-05	ci right 4.732540e-05	k: 100	n:2570000
ZEB2   2570000 perm   3462 sec   (742 perm/sec)   p_kst 3.891051e-05   p_cons 2.520938e-01   p_joint 1.256809e-04

Joint ci ratio: 2.177641e-01	ci left: 1.119122e-04	ci right 1.396179e-04	k: 323	n:2580000
Cons ci ratio: 4.203626e-03	ci left: 2.515590e-01	ci right 2.526191e-01	k: 650389	n:2580000
KS ci ratio: 3.900469e-01	ci left: 3.153654e-05	ci right 4.714197e-05	k: 100	n:2580000
ZEB2   2580000 perm   3487 sec   (740 perm/sec)   p_kst 3.875969e-05   p_cons 2.520888e-01   p_joint 1.251938e-04

Joint ci ratio: 2.170950e-01	ci left: 1.122103e-04	ci right 1.398930e-04	k: 325	n:2590000
Cons ci ratio: 4.195601e-03	ci left: 2.515512e-01	ci right 2.526092e-01	k: 652887	n:2590000
KS ci ratio: 3.881301e-01	ci left: 3.176310e-05	ci right 4.738365e-05	k: 101	n:2590000
ZEB2   2590000 perm   3511 sec   (738 perm/sec)   p_kst 3.899614e-05   p_cons 2.520799e-01   p_joint 1.254826e-04

Joint ci ratio: 2.161029e-01	ci left: 1.128699e-04	ci right 1.405713e-04	k: 328	n:2600000
Cons ci ratio: 4.187780e-03	ci left: 2.515292e-01	ci right 2.525852e-01	k: 655348	n:2600000
KS ci ratio: 3.881301e-01	ci left: 3.164094e-05	ci right 4.720140e-05	k: 101	n:2600000
ZEB2   2600000 perm   3535 sec   (735 perm/sec)   p_kst 3.884615e-05   p_cons 2.520569e-01   p_joint 1.261538e-04

Joint ci ratio: 2.194644e-01	ci left: 1.088150e-04	ci right 1.359927e-04	k: 318	n:2610000
Cons ci ratio: 4.179735e-03	ci left: 2.515316e-01	ci right 2.525855e-01	k: 657872	n:2610000
KS ci ratio: 3.881302e-01	ci left: 3.151971e-05	ci right 4.702055e-05	k: 101	n:2610000
ZEB2   2610000 perm   3560 sec   (733 perm/sec)   p_kst 3.869732e-05   p_cons 2.520582e-01   p_joint 1.218391e-04

Joint ci ratio: 2.194645e-01	ci left: 1.083997e-04	ci right 1.354736e-04	k: 318	n:2620000
Cons ci ratio: 4.171796e-03	ci left: 2.515285e-01	ci right 2.525804e-01	k: 660382	n:2620000
KS ci ratio: 3.881302e-01	ci left: 3.139940e-05	ci right 4.684109e-05	k: 101	n:2620000
ZEB2   2620000 perm   3585 sec   (731 perm/sec)   p_kst 3.854962e-05   p_cons 2.520542e-01   p_joint 1.213740e-04

Joint ci ratio: 2.194645e-01	ci left: 1.079875e-04	ci right 1.349585e-04	k: 318	n:2630000
Cons ci ratio: 4.163733e-03	ci left: 2.515407e-01	ci right 2.525906e-01	k: 662932	n:2630000
KS ci ratio: 3.881302e-01	ci left: 3.128001e-05	ci right 4.666298e-05	k: 101	n:2630000
ZEB2   2630000 perm   3610 sec   (729 perm/sec)   p_kst 3.840304e-05   p_cons 2.520654e-01   p_joint 1.209125e-04

Joint ci ratio: 2.191213e-01	ci left: 1.079365e-04	ci right 1.348469e-04	k: 319	n:2640000
Cons ci ratio: 4.156022e-03	ci left: 2.515252e-01	ci right 2.525731e-01	k: 665409	n:2640000
KS ci ratio: 3.881303e-01	ci left: 3.116153e-05	ci right 4.648623e-05	k: 101	n:2640000
ZEB2   2640000 perm   3635 sec   (726 perm/sec)   p_kst 3.825758e-05   p_cons 2.520489e-01   p_joint 1.208333e-04

Joint ci ratio: 2.181013e-01	ci left: 1.085993e-04	ci right 1.355320e-04	k: 322	n:2650000
Cons ci ratio: 4.148391e-03	ci left: 2.515064e-01	ci right 2.525523e-01	k: 667877	n:2650000
KS ci ratio: 3.843800e-01	ci left: 3.172537e-05	ci right 4.713847e-05	k: 103	n:2650000
ZEB2   2650000 perm   3660 sec   (724 perm/sec)   p_kst 3.886792e-05   p_cons 2.520291e-01   p_joint 1.215094e-04

Joint ci ratio: 2.177645e-01	ci left: 1.085464e-04	ci right 1.354189e-04	k: 323	n:2660000
Cons ci ratio: 4.140984e-03	ci left: 2.514712e-01	ci right 2.525151e-01	k: 670301	n:2660000
KS ci ratio: 3.843800e-01	ci left: 3.160610e-05	ci right 4.696126e-05	k: 103	n:2660000
ZEB2   2660000 perm   3685 sec   (722 perm/sec)   p_kst 3.872180e-05   p_cons 2.519929e-01   p_joint 1.214286e-04

Joint ci ratio: 2.177645e-01	ci left: 1.081399e-04	ci right 1.349117e-04	k: 323	n:2670000
Cons ci ratio: 4.133300e-03	ci left: 2.514651e-01	ci right 2.525070e-01	k: 672802	n:2670000
KS ci ratio: 3.843801e-01	ci left: 3.148772e-05	ci right 4.678537e-05	k: 103	n:2670000
ZEB2   2670000 perm   3710 sec   (720 perm/sec)   p_kst 3.857678e-05   p_cons 2.519858e-01   p_joint 1.209738e-04

Joint ci ratio: 2.177646e-01	ci left: 1.077364e-04	ci right 1.344083e-04	k: 323	n:2680000
Cons ci ratio: 4.125479e-03	ci left: 2.514754e-01	ci right 2.525154e-01	k: 675347	n:2680000
KS ci ratio: 3.843801e-01	ci left: 3.137023e-05	ci right 4.661080e-05	k: 103	n:2680000
ZEB2   2680000 perm   3737 sec   (717 perm/sec)   p_kst 3.843284e-05   p_cons 2.519951e-01   p_joint 1.205224e-04

Joint ci ratio: 2.219134e-01	ci left: 1.031205e-04	ci right 1.292025e-04	k: 311	n:2690000
Cons ci ratio: 4.117970e-03	ci left: 2.514612e-01	ci right 2.524992e-01	k: 677826	n:2690000
KS ci ratio: 3.843801e-01	ci left: 3.125361e-05	ci right 4.643753e-05	k: 103	n:2690000
ZEB2   2690000 perm   3764 sec   (715 perm/sec)   p_kst 3.828996e-05   p_cons 2.519799e-01   p_joint 1.156134e-04

Joint ci ratio: 2.208541e-01	ci left: 1.037880e-04	ci right 1.298966e-04	k: 314	n:2700000
Cons ci ratio: 4.110384e-03	ci left: 2.514578e-01	ci right 2.524939e-01	k: 680334	n:2700000
KS ci ratio: 3.789531e-01	ci left: 3.214237e-05	ci right 4.748275e-05	k: 106	n:2700000
ZEB2   2700000 perm   3790 sec   (712 perm/sec)   p_kst 3.925926e-05   p_cons 2.519756e-01   p_joint 1.162963e-04

Joint ci ratio: 2.198097e-01	ci left: 1.044510e-04	ci right 1.305853e-04	k: 317	n:2710000
Cons ci ratio: 4.102793e-03	ci left: 2.514588e-01	ci right 2.524930e-01	k: 682854	n:2710000
KS ci ratio: 3.754603e-01	ci left: 3.269181e-05	ci right 4.811519e-05	k: 108	n:2710000
ZEB2   2710000 perm   3817 sec   (710 perm/sec)   p_kst 3.985240e-05   p_cons 2.519756e-01   p_joint 1.169742e-04

Joint ci ratio: 2.198098e-01	ci left: 1.040670e-04	ci right 1.301052e-04	k: 317	n:2720000
Cons ci ratio: 4.095634e-03	ci left: 2.514239e-01	ci right 2.524561e-01	k: 685276	n:2720000
KS ci ratio: 3.754603e-01	ci left: 3.257162e-05	ci right 4.793830e-05	k: 108	n:2720000
ZEB2   2720000 perm   3844 sec   (708 perm/sec)   p_kst 3.970588e-05   p_cons 2.519397e-01   p_joint 1.165441e-04

Joint ci ratio: 2.198098e-01	ci left: 1.036858e-04	ci right 1.296286e-04	k: 317	n:2730000
Cons ci ratio: 4.088064e-03	ci left: 2.514305e-01	ci right 2.524608e-01	k: 687811	n:2730000
KS ci ratio: 3.754603e-01	ci left: 3.245230e-05	ci right 4.776270e-05	k: 108	n:2730000
ZEB2   2730000 perm   3869 sec   (706 perm/sec)   p_kst 3.956044e-05   p_cons 2.519454e-01   p_joint 1.161172e-04

Joint ci ratio: 2.198099e-01	ci left: 1.033073e-04	ci right 1.291555e-04	k: 317	n:2740000
Cons ci ratio: 4.080477e-03	ci left: 2.514426e-01	ci right 2.524711e-01	k: 690361	n:2740000
KS ci ratio: 3.754604e-01	ci left: 3.233387e-05	ci right 4.758839e-05	k: 108	n:2740000
ZEB2   2740000 perm   3898 sec   (703 perm/sec)   p_kst 3.941606e-05   p_cons 2.519566e-01   p_joint 1.156934e-04

Joint ci ratio: 2.191219e-01	ci left: 1.036190e-04	ci right 1.294530e-04	k: 319	n:2750000
Cons ci ratio: 4.072920e-03	ci left: 2.514557e-01	ci right 2.524823e-01	k: 692914	n:2750000
KS ci ratio: 3.720624e-01	ci left: 3.287525e-05	ci right 4.821062e-05	k: 110	n:2750000
ZEB2   2750000 perm   3925 sec   (701 perm/sec)   p_kst 4.000000e-05   p_cons 2.519687e-01   p_joint 1.160000e-04

Joint ci ratio: 2.187803e-01	ci left: 1.035860e-04	ci right 1.293662e-04	k: 320	n:2760000
Cons ci ratio: 4.065799e-03	ci left: 2.514321e-01	ci right 2.524568e-01	k: 695366	n:2760000
KS ci ratio: 3.720624e-01	ci left: 3.275613e-05	ci right 4.803594e-05	k: 110	n:2760000
ZEB2   2760000 perm   3952 sec   (698 perm/sec)   p_kst 3.985507e-05   p_cons 2.519442e-01   p_joint 1.159420e-04

Joint ci ratio: 2.191220e-01	ci left: 1.028708e-04	ci right 1.285184e-04	k: 319	n:2770000
Cons ci ratio: 4.058576e-03	ci left: 2.514217e-01	ci right 2.524445e-01	k: 697854	n:2770000
KS ci ratio: 3.703976e-01	ci left: 3.296521e-05	ci right 4.825707e-05	k: 111	n:2770000
ZEB2   2770000 perm   3978 sec   (696 perm/sec)   p_kst 4.007220e-05   p_cons 2.519329e-01   p_joint 1.151625e-04

Joint ci ratio: 2.191220e-01	ci left: 1.025008e-04	ci right 1.280561e-04	k: 319	n:2780000
Cons ci ratio: 4.050903e-03	ci left: 2.514566e-01	ci right 2.524777e-01	k: 700468	n:2780000
KS ci ratio: 3.703977e-01	ci left: 3.284663e-05	ci right 4.808348e-05	k: 111	n:2780000
ZEB2   2780000 perm   4006 sec   (694 perm/sec)   p_kst 3.992806e-05   p_cons 2.519669e-01   p_joint 1.147482e-04

Joint ci ratio: 2.191221e-01	ci left: 1.021334e-04	ci right 1.275971e-04	k: 319	n:2790000
Cons ci ratio: 4.043855e-03	ci left: 2.514373e-01	ci right 2.524564e-01	k: 702931	n:2790000
KS ci ratio: 3.703977e-01	ci left: 3.272890e-05	ci right 4.791114e-05	k: 111	n:2790000
ZEB2   2790000 perm   4032 sec   (692 perm/sec)   p_kst 3.978495e-05   p_cons 2.519466e-01   p_joint 1.143369e-04

Joint ci ratio: 2.181020e-01	ci left: 1.027814e-04	ci right 1.282714e-04	k: 322	n:2800000
Cons ci ratio: 4.036484e-03	ci left: 2.514516e-01	ci right 2.524689e-01	k: 705488	n:2800000
KS ci ratio: 3.671341e-01	ci left: 3.326011e-05	ci right 4.852022e-05	k: 113	n:2800000
ZEB2   2800000 perm   4062 sec   (689 perm/sec)   p_kst 4.035714e-05   p_cons 2.519600e-01   p_joint 1.150000e-04

Joint ci ratio: 2.177652e-01	ci left: 1.027521e-04	ci right 1.281902e-04	k: 323	n:2810000
Cons ci ratio: 4.029457e-03	ci left: 2.514373e-01	ci right 2.524529e-01	k: 707965	n:2810000
KS ci ratio: 3.655343e-01	ci left: 3.346486e-05	ci right 4.873604e-05	k: 114	n:2810000
ZEB2   2810000 perm   4091 sec   (687 perm/sec)   p_kst 4.056940e-05   p_cons 2.519448e-01   p_joint 1.149466e-04

Joint ci ratio: 2.174299e-01	ci left: 1.027230e-04	ci right 1.281095e-04	k: 324	n:2820000
Cons ci ratio: 4.022403e-03	ci left: 2.514292e-01	ci right 2.524429e-01	k: 710459	n:2820000
KS ci ratio: 3.655344e-01	ci left: 3.334619e-05	ci right 4.856322e-05	k: 114	n:2820000
ZEB2   2820000 perm   4121 sec   (684 perm/sec)   p_kst 4.042553e-05   p_cons 2.519358e-01   p_joint 1.148936e-04

Joint ci ratio: 2.170962e-01	ci left: 1.026941e-04	ci right 1.280294e-04	k: 325	n:2830000
Cons ci ratio: 4.015246e-03	ci left: 2.514342e-01	ci right 2.524462e-01	k: 712990	n:2830000
KS ci ratio: 3.655344e-01	ci left: 3.322836e-05	ci right 4.839161e-05	k: 114	n:2830000
ZEB2   2830000 perm   4149 sec   (682 perm/sec)   p_kst 4.028269e-05   p_cons 2.519399e-01   p_joint 1.148410e-04

Joint ci ratio: 2.164333e-01	ci left: 1.029985e-04	ci right 1.283210e-04	k: 327	n:2840000
Cons ci ratio: 4.008127e-03	ci left: 2.514392e-01	ci right 2.524493e-01	k: 715521	n:2840000
KS ci ratio: 3.639554e-01	ci left: 3.343120e-05	ci right 4.860547e-05	k: 115	n:2840000
ZEB2   2840000 perm   4176 sec   (680 perm/sec)   p_kst 4.049296e-05   p_cons 2.519440e-01   p_joint 1.151408e-04

Joint ci ratio: 2.157764e-01	ci left: 1.033009e-04	ci right 1.286104e-04	k: 329	n:2850000
Cons ci ratio: 4.000890e-03	ci left: 2.514589e-01	ci right 2.524673e-01	k: 718094	n:2850000
KS ci ratio: 3.639554e-01	ci left: 3.331390e-05	ci right 4.843492e-05	k: 115	n:2850000
ZEB2   2850000 perm   4206 sec   (678 perm/sec)   p_kst 4.035088e-05   p_cons 2.519628e-01   p_joint 1.154386e-04

Joint ci ratio: 2.222707e-01	ci left: 9.666068e-05	ci right 1.211536e-04	k: 310	n:2860000
Cons ci ratio: 3.994062e-03	ci left: 2.514434e-01	ci right 2.524501e-01	k: 720567	n:2860000
KS ci ratio: 3.623967e-01	ci left: 3.351516e-05	ci right 4.864699e-05	k: 116	n:2860000
ZEB2   2860000 perm   4236 sec   (675 perm/sec)   p_kst 4.055944e-05   p_cons 2.519465e-01   p_joint 1.083916e-04

Joint ci ratio: 2.215594e-01	ci left: 9.698201e-05	ci right 1.214670e-04	k: 312	n:2870000
Cons ci ratio: 3.986867e-03	ci left: 2.514661e-01	ci right 2.524710e-01	k: 723149	n:2870000
KS ci ratio: 3.623967e-01	ci left: 3.339838e-05	ci right 4.847749e-05	k: 116	n:2870000
ZEB2   2870000 perm   4265 sec   (673 perm/sec)   p_kst 4.041812e-05   p_cons 2.519683e-01   p_joint 1.087108e-04

Joint ci ratio: 2.215594e-01	ci left: 9.664527e-05	ci right 1.210452e-04	k: 312	n:2880000
Cons ci ratio: 3.979971e-03	ci left: 2.514640e-01	ci right 2.524671e-01	k: 725660	n:2880000
KS ci ratio: 3.623967e-01	ci left: 3.328242e-05	ci right 4.830916e-05	k: 116	n:2880000
ZEB2   2880000 perm   4295 sec   (671 perm/sec)   p_kst 4.027778e-05   p_cons 2.519653e-01   p_joint 1.083333e-04

Joint ci ratio: 2.205051e-01	ci left: 9.729146e-05	ci right 1.217218e-04	k: 315	n:2890000
Cons ci ratio: 3.972998e-03	ci left: 2.514726e-01	ci right 2.524740e-01	k: 728202	n:2890000
KS ci ratio: 3.623967e-01	ci left: 3.316725e-05	ci right 4.814200e-05	k: 116	n:2890000
ZEB2   2890000 perm   4322 sec   (669 perm/sec)   p_kst 4.013841e-05   p_cons 2.519730e-01   p_joint 1.089965e-04

Joint ci ratio: 2.201571e-01	ci left: 9.728177e-05	ci right 1.216659e-04	k: 316	n:2900000
Cons ci ratio: 3.966442e-03	ci left: 2.514449e-01	ci right 2.524446e-01	k: 730639	n:2900000
KS ci ratio: 3.608578e-01	ci left: 3.336638e-05	ci right 4.835202e-05	k: 117	n:2900000
ZEB2   2900000 perm   4349 sec   (667 perm/sec)   p_kst 4.034483e-05   p_cons 2.519445e-01   p_joint 1.089655e-04

Joint ci ratio: 2.194658e-01	ci left: 9.759691e-05	ci right 1.219729e-04	k: 318	n:2910000
Cons ci ratio: 3.959673e-03	ci left: 2.514408e-01	ci right 2.524387e-01	k: 733144	n:2910000
KS ci ratio: 3.593384e-01	ci left: 3.356428e-05	ci right 4.856047e-05	k: 118	n:2910000
ZEB2   2910000 perm   4378 sec   (665 perm/sec)   p_kst 4.054983e-05   p_cons 2.519395e-01   p_joint 1.092784e-04

Joint ci ratio: 2.194658e-01	ci left: 9.726268e-05	ci right 1.215552e-04	k: 318	n:2920000
Cons ci ratio: 3.952526e-03	ci left: 2.514761e-01	ci right 2.524723e-01	k: 735764	n:2920000
KS ci ratio: 3.593384e-01	ci left: 3.344933e-05	ci right 4.839416e-05	k: 118	n:2920000
ZEB2   2920000 perm   4407 sec   (663 perm/sec)   p_kst 4.041096e-05   p_cons 2.519740e-01   p_joint 1.089041e-04

Joint ci ratio: 2.187810e-01	ci left: 9.757586e-05	ci right 1.218603e-04	k: 320	n:2930000
Cons ci ratio: 3.945660e-03	ci left: 2.514879e-01	ci right 2.524825e-01	k: 738316	n:2930000
KS ci ratio: 3.593385e-01	ci left: 3.333517e-05	ci right 4.822900e-05	k: 118	n:2930000
ZEB2   2930000 perm   4434 sec   (661 perm/sec)   p_kst 4.027304e-05   p_cons 2.519850e-01   p_joint 1.092150e-04

Joint ci ratio: 2.184411e-01	ci left: 9.756548e-05	ci right 1.218046e-04	k: 321	n:2940000
Cons ci ratio: 3.938805e-03	ci left: 2.515021e-01	ci right 2.524950e-01	k: 740875	n:2940000
KS ci ratio: 3.593385e-01	ci left: 3.322178e-05	ci right 4.806495e-05	k: 118	n:2940000
ZEB2   2940000 perm   4462 sec   (659 perm/sec)   p_kst 4.013605e-05   p_cons 2.519983e-01   p_joint 1.091837e-04

Joint ci ratio: 2.184411e-01	ci left: 9.723475e-05	ci right 1.213917e-04	k: 321	n:2950000
Cons ci ratio: 3.932137e-03	ci left: 2.515016e-01	ci right 2.524928e-01	k: 743391	n:2950000
KS ci ratio: 3.593385e-01	ci left: 3.310917e-05	ci right 4.790202e-05	k: 118	n:2950000
ZEB2   2950000 perm   4490 sec   (657 perm/sec)   p_kst 4.000000e-05   p_cons 2.519969e-01   p_joint 1.088136e-04

Joint ci ratio: 2.184411e-01	ci left: 9.690625e-05	ci right 1.209816e-04	k: 321	n:2960000
Cons ci ratio: 3.925205e-03	ci left: 2.515298e-01	ci right 2.525194e-01	k: 745992	n:2960000
KS ci ratio: 3.593385e-01	ci left: 3.299731e-05	ci right 4.774019e-05	k: 118	n:2960000
ZEB2   2960000 perm   4520 sec   (655 perm/sec)   p_kst 3.986486e-05   p_cons 2.520243e-01   p_joint 1.084459e-04

Joint ci ratio: 2.181027e-01	ci left: 9.689826e-05	ci right 1.209293e-04	k: 322	n:2970000
Cons ci ratio: 3.918238e-03	ci left: 2.515645e-01	ci right 2.525525e-01	k: 748613	n:2970000
KS ci ratio: 3.593386e-01	ci left: 3.288621e-05	ci right 4.757945e-05	k: 118	n:2970000
ZEB2   2970000 perm   4553 sec   (652 perm/sec)   p_kst 3.973064e-05   p_cons 2.520582e-01   p_joint 1.084175e-04

Joint ci ratio: 2.325981e-01	ci left: 8.422374e-05	ci right 1.066996e-04	k: 283	n:2980000
Cons ci ratio: 3.911657e-03	ci left: 2.515655e-01	ci right 2.525518e-01	k: 751134	n:2980000
KS ci ratio: 3.578381e-01	ci left: 3.308119e-05	ci right 4.778546e-05	k: 119	n:2980000
ZEB2   2980000 perm   4581 sec   (651 perm/sec)   p_kst 3.993289e-05   p_cons 2.520584e-01   p_joint 9.496644e-05

Joint ci ratio: 2.325981e-01	ci left: 8.394205e-05	ci right 1.063427e-04	k: 283	n:2990000
Cons ci ratio: 3.905223e-03	ci left: 2.515554e-01	ci right 2.525400e-01	k: 753622	n:2990000
KS ci ratio: 3.578382e-01	ci left: 3.297055e-05	ci right 4.762565e-05	k: 119	n:2990000
ZEB2   2990000 perm   4611 sec   (648 perm/sec)   p_kst 3.979933e-05   p_cons 2.520475e-01   p_joint 9.464883e-05

Joint ci ratio: 2.321897e-01	ci left: 8.397617e-05	ci right 1.063410e-04	k: 284	n:3000000
Cons ci ratio: 3.898628e-03	ci left: 2.515641e-01	ci right 2.525471e-01	k: 756166	n:3000000
KS ci ratio: 3.578382e-01	ci left: 3.286065e-05	ci right 4.746690e-05	k: 119	n:3000000
ZEB2   3000000 perm   4643 sec   (646 perm/sec)   p_kst 3.966667e-05   p_cons 2.520553e-01   p_joint 9.466667e-05

Joint ci ratio: 2.321897e-01	ci left: 8.369718e-05	ci right 1.059877e-04	k: 284	n:3010000
Cons ci ratio: 3.892083e-03	ci left: 2.515710e-01	ci right 2.525524e-01	k: 758705	n:3010000
KS ci ratio: 3.578382e-01	ci left: 3.275148e-05	ci right 4.730920e-05	k: 119	n:3010000
ZEB2   3010000 perm   4672 sec   (644 perm/sec)   p_kst 3.953488e-05   p_cons 2.520615e-01   p_joint 9.435216e-05

Joint ci ratio: 2.359455e-01	ci left: 8.061463e-05	ci right 1.024822e-04	k: 275	n:3020000
Cons ci ratio: 3.885670e-03	ci left: 2.515683e-01	ci right 2.525480e-01	k: 761215	n:3020000
KS ci ratio: 3.534472e-01	ci left: 3.354767e-05	ci right 4.823430e-05	k: 122	n:3020000
ZEB2   3020000 perm   4701 sec   (642 perm/sec)   p_kst 4.039735e-05   p_cons 2.520579e-01   p_joint 9.105960e-05

Joint ci ratio: 2.346734e-01	ci left: 8.128031e-05	ci right 1.031923e-04	k: 278	n:3030000
Cons ci ratio: 3.879174e-03	ci left: 2.515769e-01	ci right 2.525550e-01	k: 763759	n:3030000
KS ci ratio: 3.534473e-01	ci left: 3.343695e-05	ci right 4.807512e-05	k: 122	n:3030000
ZEB2   3030000 perm   4729 sec   (641 perm/sec)   p_kst 4.026403e-05   p_cons 2.520657e-01   p_joint 9.174917e-05

Joint ci ratio: 2.342540e-01	ci left: 8.132256e-05	ci right 1.032011e-04	k: 279	n:3040000
Cons ci ratio: 3.872831e-03	ci left: 2.515735e-01	ci right 2.525500e-01	k: 766267	n:3040000
KS ci ratio: 3.534473e-01	ci left: 3.332696e-05	ci right 4.791697e-05	k: 122	n:3040000
ZEB2   3040000 perm   4756 sec   (639 perm/sec)   p_kst 4.013158e-05   p_cons 2.520615e-01   p_joint 9.177632e-05

Joint ci ratio: 2.342540e-01	ci left: 8.105593e-05	ci right 1.028627e-04	k: 279	n:3050000
Cons ci ratio: 3.866496e-03	ci left: 2.515725e-01	ci right 2.525474e-01	k: 768782	n:3050000
KS ci ratio: 3.534473e-01	ci left: 3.321769e-05	ci right 4.775987e-05	k: 122	n:3050000
ZEB2   3050000 perm   4784 sec   (638 perm/sec)   p_kst 4.000000e-05   p_cons 2.520597e-01   p_joint 9.147541e-05

Joint ci ratio: 2.359456e-01	ci left: 7.956084e-05	ci right 1.011425e-04	k: 275	n:3060000
Cons ci ratio: 3.860048e-03	ci left: 2.515855e-01	ci right 2.525588e-01	k: 771340	n:3060000
KS ci ratio: 3.534473e-01	ci left: 3.310913e-05	ci right 4.760379e-05	k: 122	n:3060000
ZEB2   3060000 perm   4812 sec   (636 perm/sec)   p_kst 3.986928e-05   p_cons 2.520719e-01   p_joint 8.986928e-05

Joint ci ratio: 2.359456e-01	ci left: 7.930168e-05	ci right 1.008131e-04	k: 275	n:3070000
Cons ci ratio: 3.854091e-03	ci left: 2.515535e-01	ci right 2.525252e-01	k: 773760	n:3070000
KS ci ratio: 3.520192e-01	ci left: 3.329816e-05	ci right 4.780321e-05	k: 123	n:3070000
ZEB2   3070000 perm   4840 sec   (634 perm/sec)   p_kst 4.006515e-05   p_cons 2.520391e-01   p_joint 8.957655e-05

Joint ci ratio: 2.355193e-01	ci left: 7.934971e-05	ci right 1.008296e-04	k: 276	n:3080000
Cons ci ratio: 3.847824e-03	ci left: 2.515548e-01	ci right 2.525249e-01	k: 776282	n:3080000
KS ci ratio: 3.520192e-01	ci left: 3.319005e-05	ci right 4.764800e-05	k: 123	n:3080000
ZEB2   3080000 perm   4869 sec   (633 perm/sec)   p_kst 3.993506e-05   p_cons 2.520396e-01   p_joint 8.961039e-05

Joint ci ratio: 2.346736e-01	ci left: 7.970204e-05	ci right 1.011886e-04	k: 278	n:3090000
Cons ci ratio: 3.841344e-03	ci left: 2.515800e-01	ci right 2.525486e-01	k: 778878	n:3090000
KS ci ratio: 3.520193e-01	ci left: 3.308264e-05	ci right 4.749380e-05	k: 123	n:3090000
ZEB2   3090000 perm   4900 sec   (631 perm/sec)   p_kst 3.980583e-05   p_cons 2.520641e-01   p_joint 8.996764e-05

Joint ci ratio: 2.342542e-01	ci left: 7.974857e-05	ci right 1.012037e-04	k: 279	n:3100000
Cons ci ratio: 3.834905e-03	ci left: 2.516041e-01	ci right 2.525712e-01	k: 781471	n:3100000
KS ci ratio: 3.506083e-01	ci left: 3.327004e-05	ci right 4.769153e-05	k: 124	n:3100000
ZEB2   3100000 perm   4928 sec   (629 perm/sec)   p_kst 4.000000e-05   p_cons 2.520874e-01   p_joint 9.000000e-05

Joint ci ratio: 2.338370e-01	ci left: 7.979484e-05	ci right 1.012186e-04	k: 280	n:3110000
Cons ci ratio: 3.828666e-03	ci left: 2.516117e-01	ci right 2.525772e-01	k: 784013	n:3110000
KS ci ratio: 3.506084e-01	ci left: 3.316306e-05	ci right 4.753818e-05	k: 124	n:3110000
ZEB2   3110000 perm   4957 sec   (627 perm/sec)   p_kst 3.987138e-05   p_cons 2.520942e-01   p_joint 9.003215e-05

Joint ci ratio: 2.330092e-01	ci left: 8.014263e-05	ci right 1.015726e-04	k: 282	n:3120000
Cons ci ratio: 3.822594e-03	ci left: 2.516058e-01	ci right 2.525697e-01	k: 786513	n:3120000
KS ci ratio: 3.506084e-01	ci left: 3.305677e-05	ci right 4.738582e-05	k: 124	n:3120000
ZEB2   3120000 perm   4986 sec   (626 perm/sec)   p_kst 3.974359e-05   p_cons 2.520875e-01   p_joint 9.038462e-05

Joint ci ratio: 2.317838e-01	ci left: 8.078925e-05	ci right 1.022623e-04	k: 285	n:3130000
Cons ci ratio: 3.816462e-03	ci left: 2.516085e-01	ci right 2.525709e-01	k: 789040	n:3130000
KS ci ratio: 3.506084e-01	ci left: 3.295115e-05	ci right 4.723443e-05	k: 124	n:3130000
ZEB2   3130000 perm   5015 sec   (624 perm/sec)   p_kst 3.961661e-05   p_cons 2.520895e-01   p_joint 9.105431e-05

Joint ci ratio: 2.317839e-01	ci left: 8.053196e-05	ci right 1.019366e-04	k: 285	n:3140000
Cons ci ratio: 3.810457e-03	ci left: 2.516017e-01	ci right 2.525625e-01	k: 791537	n:3140000
KS ci ratio: 3.506084e-01	ci left: 3.284621e-05	ci right 4.708400e-05	k: 124	n:3140000
ZEB2   3140000 perm   5044 sec   (623 perm/sec)   p_kst 3.949045e-05   p_cons 2.520818e-01   p_joint 9.076433e-05

Joint ci ratio: 2.317839e-01	ci left: 8.027630e-05	ci right 1.016130e-04	k: 285	n:3150000
Cons ci ratio: 3.804420e-03	ci left: 2.516009e-01	ci right 2.525602e-01	k: 794053	n:3150000
KS ci ratio: 3.506084e-01	ci left: 3.274194e-05	ci right 4.693453e-05	k: 124	n:3150000
ZEB2   3150000 perm   5073 sec   (621 perm/sec)   p_kst 3.936508e-05   p_cons 2.520803e-01   p_joint 9.047619e-05

Joint ci ratio: 2.334222e-01	ci left: 7.883019e-05	ci right 9.995200e-05	k: 281	n:3160000
Cons ci ratio: 3.798210e-03	ci left: 2.516200e-01	ci right 2.525779e-01	k: 796632	n:3160000
KS ci ratio: 3.492143e-01	ci left: 3.292697e-05	ci right 4.713016e-05	k: 125	n:3160000
ZEB2   3160000 perm   5103 sec   (619 perm/sec)   p_kst 3.955696e-05   p_cons 2.520987e-01   p_joint 8.892405e-05

Joint ci ratio: 2.334222e-01	ci left: 7.858151e-05	ci right 9.963670e-05	k: 281	n:3170000
Cons ci ratio: 3.792036e-03	ci left: 2.516385e-01	ci right 2.525948e-01	k: 799209	n:3170000
KS ci ratio: 3.492144e-01	ci left: 3.282310e-05	ci right 4.698148e-05	k: 125	n:3170000
ZEB2   3170000 perm   5133 sec   (618 perm/sec)   p_kst 3.943218e-05   p_cons 2.521164e-01   p_joint 8.864353e-05

Joint ci ratio: 2.334222e-01	ci left: 7.833440e-05	ci right 9.932338e-05	k: 281	n:3180000
Cons ci ratio: 3.785941e-03	ci left: 2.516520e-01	ci right 2.526069e-01	k: 801771	n:3180000
KS ci ratio: 3.492144e-01	ci left: 3.271988e-05	ci right 4.683374e-05	k: 125	n:3180000
ZEB2   3180000 perm   5162 sec   (616 perm/sec)   p_kst 3.930818e-05   p_cons 2.521292e-01   p_joint 8.836478e-05

Joint ci ratio: 2.359460e-01	ci left: 7.631853e-05	ci right 9.702077e-05	k: 275	n:3190000
Cons ci ratio: 3.779912e-03	ci left: 2.516618e-01	ci right 2.526151e-01	k: 804321	n:3190000
KS ci ratio: 3.492144e-01	ci left: 3.261731e-05	ci right 4.668693e-05	k: 125	n:3190000
ZEB2   3190000 perm   5191 sec   (615 perm/sec)   p_kst 3.918495e-05   p_cons 2.521382e-01   p_joint 8.620690e-05

Joint ci ratio: 2.355197e-01	ci left: 7.637408e-05	ci right 9.704850e-05	k: 276	n:3200000
Cons ci ratio: 3.774055e-03	ci left: 2.516571e-01	ci right 2.526090e-01	k: 806825	n:3200000
KS ci ratio: 3.478368e-01	ci left: 3.280053e-05	ci right 4.688078e-05	k: 126	n:3200000
ZEB2   3200000 perm   5221 sec   (613 perm/sec)   p_kst 3.937500e-05   p_cons 2.521328e-01   p_joint 8.625000e-05

Joint ci ratio: 2.355198e-01	ci left: 7.613615e-05	ci right 9.674617e-05	k: 276	n:3210000
Cons ci ratio: 3.768266e-03	ci left: 2.516484e-01	ci right 2.525988e-01	k: 809316	n:3210000
KS ci ratio: 3.478368e-01	ci left: 3.269835e-05	ci right 4.673473e-05	k: 126	n:3210000
ZEB2   3210000 perm   5251 sec   (611 perm/sec)   p_kst 3.925234e-05   p_cons 2.521234e-01   p_joint 8.598131e-05

Joint ci ratio: 2.355198e-01	ci left: 7.589970e-05	ci right 9.644572e-05	k: 276	n:3220000
Cons ci ratio: 3.762486e-03	ci left: 2.516416e-01	ci right 2.525905e-01	k: 811813	n:3220000
KS ci ratio: 3.478368e-01	ci left: 3.259680e-05	ci right 4.658959e-05	k: 126	n:3220000
ZEB2   3220000 perm   5281 sec   (610 perm/sec)   p_kst 3.913043e-05   p_cons 2.521158e-01   p_joint 8.571429e-05

Joint ci ratio: 2.346741e-01	ci left: 7.624745e-05	ci right 9.680272e-05	k: 278	n:3230000
Cons ci ratio: 3.756574e-03	ci left: 2.516507e-01	ci right 2.525981e-01	k: 814361	n:3230000
KS ci ratio: 3.478369e-01	ci left: 3.249588e-05	ci right 4.644535e-05	k: 126	n:3230000
ZEB2   3230000 perm   5310 sec   (608 perm/sec)   p_kst 3.900929e-05   p_cons 2.521241e-01   p_joint 8.606811e-05

Joint ci ratio: 2.346741e-01	ci left: 7.601211e-05	ci right 9.650395e-05	k: 278	n:3240000
Cons ci ratio: 3.750764e-03	ci left: 2.516522e-01	ci right 2.525982e-01	k: 816885	n:3240000
KS ci ratio: 3.478369e-01	ci left: 3.239558e-05	ci right 4.630201e-05	k: 126	n:3240000
ZEB2   3240000 perm   5340 sec   (607 perm/sec)   p_kst 3.888889e-05   p_cons 2.521250e-01   p_joint 8.580247e-05

Joint ci ratio: 2.346742e-01	ci left: 7.577823e-05	ci right 9.620702e-05	k: 278	n:3250000
Cons ci ratio: 3.744865e-03	ci left: 2.516655e-01	ci right 2.526100e-01	k: 819447	n:3250000
KS ci ratio: 3.464754e-01	ci left: 3.257677e-05	ci right 4.649395e-05	k: 127	n:3250000
ZEB2   3250000 perm   5370 sec   (605 perm/sec)   p_kst 3.907692e-05   p_cons 2.521375e-01   p_joint 8.553846e-05

Joint ci ratio: 2.338375e-01	ci left: 7.612328e-05	ci right 9.656134e-05	k: 280	n:3260000
Cons ci ratio: 3.738981e-03	ci left: 2.516799e-01	ci right 2.526230e-01	k: 822013	n:3260000
KS ci ratio: 3.464755e-01	ci left: 3.247684e-05	ci right 4.635133e-05	k: 127	n:3260000
ZEB2   3260000 perm   5400 sec   (604 perm/sec)   p_kst 3.895706e-05   p_cons 2.521512e-01   p_joint 8.588957e-05

Joint ci ratio: 2.334225e-01	ci left: 7.617840e-05	ci right 9.658972e-05	k: 281	n:3270000
Cons ci ratio: 3.733134e-03	ci left: 2.516933e-01	ci right 2.526350e-01	k: 824576	n:3270000
KS ci ratio: 3.437999e-01	ci left: 3.293614e-05	ci right 4.687401e-05	k: 129	n:3270000
ZEB2   3270000 perm   5430 sec   (602 perm/sec)   p_kst 3.944954e-05   p_cons 2.521639e-01   p_joint 8.593272e-05

Joint ci ratio: 2.359463e-01	ci left: 7.422441e-05	ci right 9.435863e-05	k: 275	n:3280000
Cons ci ratio: 3.727820e-03	ci left: 2.516554e-01	ci right 2.525956e-01	k: 826971	n:3280000
KS ci ratio: 3.437999e-01	ci left: 3.283572e-05	ci right 4.673111e-05	k: 129	n:3280000
ZEB2   3280000 perm   5460 sec   (601 perm/sec)   p_kst 3.932927e-05   p_cons 2.521253e-01   p_joint 8.384146e-05

Joint ci ratio: 2.417079e-01	ci left: 7.028382e-05	ci right 8.988452e-05	k: 262	n:3290000
Cons ci ratio: 3.722214e-03	ci left: 2.516497e-01	ci right 2.525884e-01	k: 829471	n:3290000
KS ci ratio: 3.424851e-01	ci left: 3.301368e-05	ci right 4.691911e-05	k: 130	n:3290000
ZEB2   3290000 perm   5490 sec   (599 perm/sec)   p_kst 3.951368e-05   p_cons 2.521188e-01   p_joint 7.963526e-05

Joint ci ratio: 2.417079e-01	ci left: 7.007084e-05	ci right 8.961214e-05	k: 262	n:3300000
Cons ci ratio: 3.716517e-03	ci left: 2.516558e-01	ci right 2.525931e-01	k: 832010	n:3300000
KS ci ratio: 3.424851e-01	ci left: 3.291363e-05	ci right 4.677693e-05	k: 130	n:3300000
ZEB2   3300000 perm   5520 sec   (598 perm/sec)   p_kst 3.939394e-05   p_cons 2.521242e-01   p_joint 7.939394e-05

Joint ci ratio: 2.417079e-01	ci left: 6.985914e-05	ci right 8.934141e-05	k: 262	n:3310000
Cons ci ratio: 3.711146e-03	ci left: 2.516314e-01	ci right 2.525672e-01	k: 834448	n:3310000
KS ci ratio: 3.424852e-01	ci left: 3.281420e-05	ci right 4.663561e-05	k: 130	n:3310000
ZEB2   3310000 perm   5550 sec   (596 perm/sec)   p_kst 3.927492e-05   p_cons 2.520991e-01   p_joint 7.915408e-05

Joint ci ratio: 2.412497e-01	ci left: 6.993170e-05	ci right 8.939170e-05	k: 263	n:3320000
Cons ci ratio: 3.705458e-03	ci left: 2.516417e-01	ci right 2.525762e-01	k: 837001	n:3320000
KS ci ratio: 3.411854e-01	ci left: 3.299071e-05	ci right 4.682211e-05	k: 131	n:3320000
ZEB2   3320000 perm   5581 sec   (595 perm/sec)   p_kst 3.945783e-05   p_cons 2.521087e-01   p_joint 7.921687e-05

Joint ci ratio: 2.403410e-01	ci left: 7.028607e-05	ci right 8.976003e-05	k: 265	n:3330000
Cons ci ratio: 3.699991e-03	ci left: 2.516322e-01	ci right 2.525652e-01	k: 839488	n:3330000
KS ci ratio: 3.386296e-01	ci left: 3.344098e-05	ci right 4.733317e-05	k: 133	n:3330000
ZEB2   3330000 perm   5612 sec   (593 perm/sec)   p_kst 3.993994e-05   p_cons 2.520985e-01   p_joint 7.957958e-05

Joint ci ratio: 2.398905e-01	ci left: 7.035702e-05	ci right 8.980866e-05	k: 266	n:3340000
Cons ci ratio: 3.694248e-03	ci left: 2.516532e-01	ci right 2.525849e-01	k: 842077	n:3340000
KS ci ratio: 3.386296e-01	ci left: 3.334086e-05	ci right 4.719145e-05	k: 133	n:3340000
ZEB2   3340000 perm   5642 sec   (592 perm/sec)   p_kst 3.982036e-05   p_cons 2.521189e-01   p_joint 7.964072e-05

Joint ci ratio: 2.394425e-01	ci left: 7.042758e-05	ci right 8.985698e-05	k: 267	n:3350000
Cons ci ratio: 3.688620e-03	ci left: 2.516652e-01	ci right 2.525955e-01	k: 844636	n:3350000
KS ci ratio: 3.386296e-01	ci left: 3.324133e-05	ci right 4.705058e-05	k: 133	n:3350000
ZEB2   3350000 perm   5674 sec   (590 perm/sec)   p_kst 3.970149e-05   p_cons 2.521301e-01   p_joint 7.970149e-05

Joint ci ratio: 2.389970e-01	ci left: 7.049776e-05	ci right 8.990497e-05	k: 268	n:3360000
Cons ci ratio: 3.683078e-03	ci left: 2.516709e-01	ci right 2.525998e-01	k: 847174	n:3360000
KS ci ratio: 3.386296e-01	ci left: 3.314240e-05	ci right 4.691055e-05	k: 133	n:3360000
ZEB2   3360000 perm   5705 sec   (589 perm/sec)   p_kst 3.958333e-05   p_cons 2.521351e-01   p_joint 7.976190e-05

Joint ci ratio: 2.381134e-01	ci left: 7.084657e-05	ci right 9.026706e-05	k: 270	n:3370000
Cons ci ratio: 3.677651e-03	ci left: 2.516673e-01	ci right 2.525948e-01	k: 849681	n:3370000
KS ci ratio: 3.361304e-01	ci left: 3.358726e-05	ci right 4.741491e-05	k: 135	n:3370000
ZEB2   3370000 perm   5736 sec   (587 perm/sec)   p_kst 4.005935e-05   p_cons 2.521309e-01   p_joint 8.011869e-05

Joint ci ratio: 2.381135e-01	ci left: 7.063696e-05	ci right 9.000000e-05	k: 270	n:3380000
Cons ci ratio: 3.672009e-03	ci left: 2.516883e-01	ci right 2.526145e-01	k: 852271	n:3380000
KS ci ratio: 3.361304e-01	ci left: 3.348788e-05	ci right 4.727463e-05	k: 135	n:3380000
ZEB2   3380000 perm   5767 sec   (586 perm/sec)   p_kst 3.994083e-05   p_cons 2.521512e-01   p_joint 7.988166e-05

Joint ci ratio: 2.372396e-01	ci left: 7.098344e-05	ci right 9.035955e-05	k: 272	n:3390000
Cons ci ratio: 3.666387e-03	ci left: 2.517098e-01	ci right 2.526346e-01	k: 854863	n:3390000
KS ci ratio: 3.349014e-01	ci left: 3.365924e-05	ci right 4.745492e-05	k: 136	n:3390000
ZEB2   3390000 perm   5798 sec   (585 perm/sec)   p_kst 4.011799e-05   p_cons 2.521720e-01   p_joint 8.023599e-05

Joint ci ratio: 2.372396e-01	ci left: 7.077466e-05	ci right 9.009379e-05	k: 272	n:3400000
Cons ci ratio: 3.661028e-03	ci left: 2.517067e-01	ci right 2.526302e-01	k: 857372	n:3400000
KS ci ratio: 3.349014e-01	ci left: 3.356024e-05	ci right 4.731535e-05	k: 136	n:3400000
ZEB2   3400000 perm   5830 sec   (583 perm/sec)   p_kst 4.000000e-05   p_cons 2.521682e-01   p_joint 8.000000e-05

Joint ci ratio: 2.363753e-01	ci left: 7.111882e-05	ci right 9.045082e-05	k: 274	n:3410000
Cons ci ratio: 3.655820e-03	ci left: 2.516905e-01	ci right 2.526126e-01	k: 859836	n:3410000
KS ci ratio: 3.349014e-01	ci left: 3.346182e-05	ci right 4.717659e-05	k: 136	n:3410000
ZEB2   3410000 perm   5861 sec   (582 perm/sec)   p_kst 3.988270e-05   p_cons 2.521513e-01   p_joint 8.035191e-05

Joint ci ratio: 2.363754e-01	ci left: 7.091087e-05	ci right 9.018635e-05	k: 274	n:3420000
Cons ci ratio: 3.650438e-03	ci left: 2.516945e-01	ci right 2.526153e-01	k: 862369	n:3420000
KS ci ratio: 3.349014e-01	ci left: 3.336398e-05	ci right 4.703865e-05	k: 136	n:3420000
ZEB2   3420000 perm   5892 sec   (580 perm/sec)   p_kst 3.976608e-05   p_cons 2.521547e-01   p_joint 8.011696e-05

Joint ci ratio: 2.363754e-01	ci left: 7.070414e-05	ci right 8.992342e-05	k: 274	n:3430000
Cons ci ratio: 3.645151e-03	ci left: 2.516912e-01	ci right 2.526106e-01	k: 864877	n:3430000
KS ci ratio: 3.336858e-01	ci left: 3.353379e-05	ci right 4.721744e-05	k: 137	n:3430000
ZEB2   3430000 perm   5924 sec   (579 perm/sec)   p_kst 3.994169e-05   p_cons 2.521507e-01   p_joint 7.988338e-05

Joint ci ratio: 2.359468e-01	ci left: 7.077210e-05	ci right 8.996988e-05	k: 275	n:3440000
Cons ci ratio: 3.639708e-03	ci left: 2.517066e-01	ci right 2.526247e-01	k: 867449	n:3440000
KS ci ratio: 3.312937e-01	ci left: 3.396917e-05	ci right 4.770993e-05	k: 139	n:3440000
ZEB2   3440000 perm   5955 sec   (578 perm/sec)   p_kst 4.040698e-05   p_cons 2.521654e-01   p_joint 7.994186e-05

Joint ci ratio: 2.350965e-01	ci left: 7.111247e-05	ci right 9.032295e-05	k: 277	n:3450000
Cons ci ratio: 3.634557e-03	ci left: 2.516940e-01	ci right 2.526107e-01	k: 869925	n:3450000
KS ci ratio: 3.301168e-01	ci left: 3.413650e-05	ci right 4.788547e-05	k: 140	n:3450000
ZEB2   3450000 perm   5987 sec   (576 perm/sec)   p_kst 4.057971e-05   p_cons 2.521522e-01   p_joint 8.028986e-05

Joint ci ratio: 2.338381e-01	ci left: 7.172307e-05	ci right 9.097979e-05	k: 280	n:3460000
Cons ci ratio: 3.629555e-03	ci left: 2.516682e-01	ci right 2.525836e-01	k: 872355	n:3460000
KS ci ratio: 3.301168e-01	ci left: 3.403784e-05	ci right 4.774708e-05	k: 140	n:3460000
ZEB2   3460000 perm   6018 sec   (575 perm/sec)   p_kst 4.046243e-05   p_cons 2.521257e-01   p_joint 8.092486e-05

Joint ci ratio: 2.334231e-01	ci left: 7.178769e-05	ci right 9.102262e-05	k: 281	n:3470000
Cons ci ratio: 3.624630e-03	ci left: 2.516369e-01	ci right 2.525509e-01	k: 874765	n:3470000
KS ci ratio: 3.289523e-01	ci left: 3.420410e-05	ci right 4.792142e-05	k: 141	n:3470000
ZEB2   3470000 perm   6050 sec   (574 perm/sec)   p_kst 4.063401e-05   p_cons 2.520937e-01   p_joint 8.097983e-05

Joint ci ratio: 2.334231e-01	ci left: 7.158140e-05	ci right 9.076106e-05	k: 281	n:3480000
Cons ci ratio: 3.619445e-03	ci left: 2.516347e-01	ci right 2.525474e-01	k: 877276	n:3480000
KS ci ratio: 3.289523e-01	ci left: 3.410581e-05	ci right 4.778371e-05	k: 141	n:3480000
ZEB2   3480000 perm   6082 sec   (572 perm/sec)   p_kst 4.051724e-05   p_cons 2.520908e-01   p_joint 8.074713e-05

Joint ci ratio: 2.426328e-01	ci left: 6.571778e-05	ci right 8.412580e-05	k: 260	n:3490000
Cons ci ratio: 3.614300e-03	ci left: 2.516308e-01	ci right 2.525421e-01	k: 879781	n:3490000
KS ci ratio: 3.289524e-01	ci left: 3.400808e-05	ci right 4.764680e-05	k: 141	n:3490000
ZEB2   3490000 perm   6114 sec   (571 perm/sec)   p_kst 4.040115e-05   p_cons 2.520862e-01   p_joint 7.449857e-05

Joint ci ratio: 2.421693e-01	ci left: 6.579838e-05	ci right 8.418847e-05	k: 261	n:3500000
Cons ci ratio: 3.609412e-03	ci left: 2.516023e-01	ci right 2.525124e-01	k: 882200	n:3500000
KS ci ratio: 3.289524e-01	ci left: 3.391092e-05	ci right 4.751066e-05	k: 141	n:3500000
ZEB2   3500000 perm   6146 sec   (570 perm/sec)   p_kst 4.028571e-05   p_cons 2.520571e-01   p_joint 7.457143e-05

Joint ci ratio: 2.421693e-01	ci left: 6.561092e-05	ci right 8.394862e-05	k: 261	n:3510000
Cons ci ratio: 3.604129e-03	ci left: 2.516173e-01	ci right 2.525261e-01	k: 884771	n:3510000
KS ci ratio: 3.289524e-01	ci left: 3.381430e-05	ci right 4.737531e-05	k: 141	n:3510000
ZEB2   3510000 perm   6177 sec   (568 perm/sec)   p_kst 4.017094e-05   p_cons 2.520715e-01   p_joint 7.435897e-05

Joint ci ratio: 2.417085e-01	ci left: 6.569139e-05	ci right 8.401141e-05	k: 262	n:3520000
Cons ci ratio: 3.599151e-03	ci left: 2.516027e-01	ci right 2.525102e-01	k: 887238	n:3520000
KS ci ratio: 3.278002e-01	ci left: 3.397891e-05	ci right 4.754815e-05	k: 142	n:3520000
ZEB2   3520000 perm   6209 sec   (567 perm/sec)   p_kst 4.034091e-05   p_cons 2.520562e-01   p_joint 7.443182e-05

Joint ci ratio: 2.398910e-01	ci left: 6.657008e-05	ci right 8.497479e-05	k: 266	n:3530000
Cons ci ratio: 3.593927e-03	ci left: 2.516162e-01	ci right 2.525224e-01	k: 889804	n:3530000
KS ci ratio: 3.266600e-01	ci left: 3.414267e-05	ci right 4.771992e-05	k: 143	n:3530000
ZEB2   3530000 perm   6242 sec   (566 perm/sec)   p_kst 4.050992e-05   p_cons 2.520691e-01   p_joint 7.535411e-05

Joint ci ratio: 2.389975e-01	ci left: 6.691311e-05	ci right 8.533355e-05	k: 268	n:3540000
Cons ci ratio: 3.588879e-03	ci left: 2.516136e-01	ci right 2.525185e-01	k: 892313	n:3540000
KS ci ratio: 3.255316e-01	ci left: 3.430559e-05	ci right 4.789065e-05	k: 144	n:3540000
ZEB2   3540000 perm   6274 sec   (564 perm/sec)   p_kst 4.067797e-05   p_cons 2.520658e-01   p_joint 7.570621e-05

Joint ci ratio: 2.385545e-01	ci left: 6.698946e-05	ci right 8.539168e-05	k: 269	n:3550000
Cons ci ratio: 3.583779e-03	ci left: 2.516185e-01	ci right 2.525222e-01	k: 894849	n:3550000
KS ci ratio: 3.255316e-01	ci left: 3.420895e-05	ci right 4.775575e-05	k: 144	n:3550000
ZEB2   3550000 perm   6306 sec   (563 perm/sec)   p_kst 4.056338e-05   p_cons 2.520701e-01   p_joint 7.577465e-05

Joint ci ratio: 2.385545e-01	ci left: 6.680129e-05	ci right 8.515182e-05	k: 269	n:3560000
Cons ci ratio: 3.578502e-03	ci left: 2.516445e-01	ci right 2.525469e-01	k: 897460	n:3560000
KS ci ratio: 3.255316e-01	ci left: 3.411286e-05	ci right 4.762160e-05	k: 144	n:3560000
ZEB2   3560000 perm   6339 sec   (562 perm/sec)   p_kst 4.044944e-05   p_cons 2.520955e-01   p_joint 7.556180e-05

Joint ci ratio: 2.385545e-01	ci left: 6.661417e-05	ci right 8.491330e-05	k: 269	n:3570000
Cons ci ratio: 3.573571e-03	ci left: 2.516362e-01	ci right 2.525373e-01	k: 899949	n:3570000
KS ci ratio: 3.255316e-01	ci left: 3.401731e-05	ci right 4.748821e-05	k: 144	n:3570000
ZEB2   3570000 perm   6371 sec   (560 perm/sec)   p_kst 4.033613e-05   p_cons 2.520866e-01   p_joint 7.535014e-05

Joint ci ratio: 2.385546e-01	ci left: 6.642809e-05	ci right 8.467612e-05	k: 269	n:3580000
Cons ci ratio: 3.568521e-03	ci left: 2.516427e-01	ci right 2.525426e-01	k: 902491	n:3580000
KS ci ratio: 3.255316e-01	ci left: 3.392229e-05	ci right 4.735556e-05	k: 144	n:3580000
ZEB2   3580000 perm   6404 sec   (559 perm/sec)   p_kst 4.022346e-05   p_cons 2.520925e-01   p_joint 7.513966e-05

Joint ci ratio: 2.426331e-01	ci left: 6.388719e-05	ci right 8.178247e-05	k: 260	n:3590000
Cons ci ratio: 3.563618e-03	ci left: 2.516359e-01	ci right 2.525345e-01	k: 904985	n:3590000
KS ci ratio: 3.244149e-01	ci left: 3.408363e-05	ci right 4.752485e-05	k: 145	n:3590000
ZEB2   3590000 perm   6436 sec   (558 perm/sec)   p_kst 4.038997e-05   p_cons 2.520850e-01   p_joint 7.242340e-05

Joint ci ratio: 2.421696e-01	ci left: 6.397064e-05	ci right 8.184991e-05	k: 261	n:3600000
Cons ci ratio: 3.558576e-03	ci left: 2.516460e-01	ci right 2.525433e-01	k: 907540	n:3600000
KS ci ratio: 3.244149e-01	ci left: 3.398895e-05	ci right 4.739283e-05	k: 145	n:3600000
ZEB2   3600000 perm   6469 sec   (556 perm/sec)   p_kst 4.027778e-05   p_cons 2.520944e-01   p_joint 7.250000e-05

Joint ci ratio: 2.421696e-01	ci left: 6.379343e-05	ci right 8.162318e-05	k: 261	n:3610000
Cons ci ratio: 3.553513e-03	ci left: 2.516604e-01	ci right 2.525566e-01	k: 910111	n:3610000
KS ci ratio: 3.244149e-01	ci left: 3.389480e-05	ci right 4.726155e-05	k: 145	n:3610000
ZEB2   3610000 perm   6502 sec   (555 perm/sec)   p_kst 4.016620e-05   p_cons 2.521083e-01   p_joint 7.229917e-05

Joint ci ratio: 2.417087e-01	ci left: 6.387670e-05	ci right 8.169066e-05	k: 262	n:3620000
Cons ci ratio: 3.548674e-03	ci left: 2.516533e-01	ci right 2.525482e-01	k: 912604	n:3620000
KS ci ratio: 3.233095e-01	ci left: 3.405495e-05	ci right 4.742962e-05	k: 146	n:3620000
ZEB2   3620000 perm   6535 sec   (554 perm/sec)   p_kst 4.033149e-05   p_cons 2.521006e-01   p_joint 7.237569e-05

Joint ci ratio: 2.407949e-01	ci left: 6.421840e-05	ci right 8.204982e-05	k: 264	n:3630000
Cons ci ratio: 3.543814e-03	ci left: 2.516506e-01	ci right 2.525443e-01	k: 915113	n:3630000
KS ci ratio: 3.233096e-01	ci left: 3.396114e-05	ci right 4.729896e-05	k: 146	n:3630000
ZEB2   3630000 perm   6569 sec   (553 perm/sec)   p_kst 4.022039e-05   p_cons 2.520972e-01   p_joint 7.272727e-05

Joint ci ratio: 2.398913e-01	ci left: 6.455834e-05	ci right 8.240688e-05	k: 266	n:3640000
Cons ci ratio: 3.538927e-03	ci left: 2.516529e-01	ci right 2.525453e-01	k: 917640	n:3640000
KS ci ratio: 3.233096e-01	ci left: 3.386784e-05	ci right 4.716902e-05	k: 146	n:3640000
ZEB2   3640000 perm   6602 sec   (551 perm/sec)   p_kst 4.010989e-05   p_cons 2.520989e-01   p_joint 7.307692e-05

Joint ci ratio: 2.389978e-01	ci left: 6.489654e-05	ci right 8.276187e-05	k: 268	n:3650000
Cons ci ratio: 3.534115e-03	ci left: 2.516494e-01	ci right 2.525406e-01	k: 920146	n:3650000
KS ci ratio: 3.222154e-01	ci left: 3.402683e-05	ci right 4.733588e-05	k: 147	n:3650000
ZEB2   3650000 perm   6636 sec   (550 perm/sec)   p_kst 4.027397e-05   p_cons 2.520948e-01   p_joint 7.342466e-05

Joint ci ratio: 2.381142e-01	ci left: 6.523302e-05	ci right 8.311479e-05	k: 270	n:3660000
Cons ci ratio: 3.529265e-03	ci left: 2.516519e-01	ci right 2.525419e-01	k: 922674	n:3660000
KS ci ratio: 3.222155e-01	ci left: 3.393386e-05	ci right 4.720655e-05	k: 147	n:3660000
ZEB2   3660000 perm   6669 sec   (549 perm/sec)   p_kst 4.016393e-05   p_cons 2.520967e-01   p_joint 7.377049e-05

Joint ci ratio: 2.381142e-01	ci left: 6.505527e-05	ci right 8.288832e-05	k: 270	n:3670000
Cons ci ratio: 3.524487e-03	ci left: 2.516490e-01	ci right 2.525378e-01	k: 925182	n:3670000
KS ci ratio: 3.222155e-01	ci left: 3.384140e-05	ci right 4.707792e-05	k: 147	n:3670000
ZEB2   3670000 perm   6703 sec   (548 perm/sec)   p_kst 4.005450e-05   p_cons 2.520932e-01   p_joint 7.356948e-05

Joint ci ratio: 2.381142e-01	ci left: 6.487849e-05	ci right 8.266308e-05	k: 270	n:3680000
Cons ci ratio: 3.519570e-03	ci left: 2.516629e-01	ci right 2.525505e-01	k: 927752	n:3680000
KS ci ratio: 3.222155e-01	ci left: 3.374943e-05	ci right 4.694999e-05	k: 147	n:3680000
ZEB2   3680000 perm   6736 sec   (546 perm/sec)   p_kst 3.994565e-05   p_cons 2.521065e-01   p_joint 7.336957e-05

Joint ci ratio: 2.381143e-01	ci left: 6.470267e-05	ci right 8.243906e-05	k: 270	n:3690000
Cons ci ratio: 3.514695e-03	ci left: 2.516746e-01	ci right 2.525610e-01	k: 930314	n:3690000
KS ci ratio: 3.222155e-01	ci left: 3.365797e-05	ci right 4.682275e-05	k: 147	n:3690000
ZEB2   3690000 perm   6770 sec   (545 perm/sec)   p_kst 3.983740e-05   p_cons 2.521176e-01   p_joint 7.317073e-05

Joint ci ratio: 2.376761e-01	ci left: 6.478196e-05	ci right 8.250260e-05	k: 271	n:3700000
Cons ci ratio: 3.509849e-03	ci left: 2.516852e-01	ci right 2.525704e-01	k: 932872	n:3700000
KS ci ratio: 3.222155e-01	ci left: 3.356700e-05	ci right 4.669621e-05	k: 147	n:3700000
ZEB2   3700000 perm   6804 sec   (544 perm/sec)   p_kst 3.972973e-05   p_cons 2.521276e-01   p_joint 7.324324e-05

Joint ci ratio: 2.368071e-01	ci left: 6.511439e-05	ci right 8.285129e-05	k: 273	n:3710000
Cons ci ratio: 3.505162e-03	ci left: 2.516808e-01	ci right 2.525648e-01	k: 935375	n:3710000
KS ci ratio: 3.222155e-01	ci left: 3.347653e-05	ci right 4.657034e-05	k: 147	n:3710000
ZEB2   3710000 perm   6837 sec   (543 perm/sec)   p_kst 3.962264e-05   p_cons 2.521226e-01   p_joint 7.358491e-05

Joint ci ratio: 2.363761e-01	ci left: 6.519223e-05	ci right 8.291329e-05	k: 274	n:3720000
Cons ci ratio: 3.500370e-03	ci left: 2.516897e-01	ci right 2.525725e-01	k: 937927	n:3720000
KS ci ratio: 3.211324e-01	ci left: 3.363365e-05	ci right 4.673560e-05	k: 148	n:3720000
ZEB2   3720000 perm   6871 sec   (541 perm/sec)   p_kst 3.978495e-05   p_cons 2.521309e-01   p_joint 7.365591e-05

Joint ci ratio: 2.359475e-01	ci left: 6.526969e-05	ci right 8.297493e-05	k: 275	n:3730000
Cons ci ratio: 3.495596e-03	ci left: 2.516988e-01	ci right 2.525804e-01	k: 940480	n:3730000
KS ci ratio: 3.200602e-01	ci left: 3.379001e-05	ci right 4.689990e-05	k: 149	n:3730000
ZEB2   3730000 perm   6905 sec   (540 perm/sec)   p_kst 3.994638e-05   p_cons 2.521394e-01   p_joint 7.372654e-05

Joint ci ratio: 2.394435e-01	ci left: 6.308350e-05	ci right 8.048691e-05	k: 267	n:3740000
Cons ci ratio: 3.490753e-03	ci left: 2.517174e-01	ci right 2.525979e-01	k: 943069	n:3740000
KS ci ratio: 3.189986e-01	ci left: 3.394560e-05	ci right 4.706325e-05	k: 150	n:3740000
ZEB2   3740000 perm   6939 sec   (539 perm/sec)   p_kst 4.010695e-05   p_cons 2.521575e-01   p_joint 7.139037e-05

Joint ci ratio: 2.454715e-01	ci left: 5.965916e-05	ci right 7.659546e-05	k: 254	n:3750000
Cons ci ratio: 3.486148e-03	ci left: 2.517123e-01	ci right 2.525916e-01	k: 945569	n:3750000
KS ci ratio: 3.189986e-01	ci left: 3.385508e-05	ci right 4.693775e-05	k: 150	n:3750000
ZEB2   3750000 perm   6972 sec   (538 perm/sec)   p_kst 4.000000e-05   p_cons 2.521517e-01   p_joint 6.773333e-05

Joint ci ratio: 2.449916e-01	ci left: 5.975011e-05	ci right 7.667401e-05	k: 255	n:3760000
Cons ci ratio: 3.481575e-03	ci left: 2.517058e-01	ci right 2.525839e-01	k: 948064	n:3760000
KS ci ratio: 3.179475e-01	ci left: 3.400974e-05	ci right 4.710006e-05	k: 151	n:3760000
ZEB2   3760000 perm   7006 sec   (537 perm/sec)   p_kst 4.015957e-05   p_cons 2.521447e-01   p_joint 6.781915e-05

Joint ci ratio: 2.445145e-01	ci left: 5.984061e-05	ci right 7.675212e-05	k: 256	n:3770000
Cons ci ratio: 3.476906e-03	ci left: 2.517116e-01	ci right 2.525885e-01	k: 950605	n:3770000
KS ci ratio: 3.169067e-01	ci left: 3.416365e-05	ci right 4.726144e-05	k: 152	n:3770000
ZEB2   3770000 perm   7041 sec   (535 perm/sec)   p_kst 4.031830e-05   p_cons 2.521499e-01   p_joint 6.790451e-05

Joint ci ratio: 2.445145e-01	ci left: 5.968230e-05	ci right 7.654908e-05	k: 256	n:3780000
Cons ci ratio: 3.472225e-03	ci left: 2.517208e-01	ci right 2.525966e-01	k: 953159	n:3780000
KS ci ratio: 3.169068e-01	ci left: 3.407327e-05	ci right 4.713641e-05	k: 152	n:3780000
ZEB2   3780000 perm   7074 sec   (534 perm/sec)   p_kst 4.021164e-05   p_cons 2.521585e-01   p_joint 6.772487e-05

Joint ci ratio: 2.435686e-01	ci left: 6.002026e-05	ci right 7.690701e-05	k: 258	n:3790000
Cons ci ratio: 3.467689e-03	ci left: 2.517162e-01	ci right 2.525908e-01	k: 955661	n:3790000
KS ci ratio: 3.148555e-01	ci left: 3.446924e-05	ci right 4.758144e-05	k: 154	n:3790000
ZEB2   3790000 perm   7109 sec   (533 perm/sec)   p_kst 4.063325e-05   p_cons 2.521533e-01   p_joint 6.807388e-05

Joint ci ratio: 2.430997e-01	ci left: 6.010943e-05	ci right 7.698379e-05	k: 259	n:3800000
Cons ci ratio: 3.462972e-03	ci left: 2.517332e-01	ci right 2.526067e-01	k: 958245	n:3800000
KS ci ratio: 3.148555e-01	ci left: 3.437853e-05	ci right 4.745622e-05	k: 154	n:3800000
ZEB2   3800000 perm   7142 sec   (532 perm/sec)   p_kst 4.052632e-05   p_cons 2.521697e-01   p_joint 6.815789e-05

Joint ci ratio: 1.696231e-01	ci left: 1.282698e-04	ci right 1.522907e-04	k: 533	n:3810000
Cons ci ratio: 3.458481e-03	ci left: 2.517275e-01	ci right 2.525999e-01	k: 960743	n:3810000
KS ci ratio: 3.138447e-01	ci left: 3.453006e-05	ci right 4.761477e-05	k: 155	n:3810000
ZEB2   3810000 perm   7177 sec   (531 perm/sec)   p_kst 4.068241e-05   p_cons 2.521635e-01   p_joint 1.398950e-04

Joint ci ratio: 1.694645e-01	ci left: 1.281847e-04	ci right 1.521649e-04	k: 534	n:3820000
Cons ci ratio: 3.454056e-03	ci left: 2.517167e-01	ci right 2.525879e-01	k: 963221	n:3820000
KS ci ratio: 3.138447e-01	ci left: 3.443967e-05	ci right 4.749013e-05	k: 155	n:3820000
ZEB2   3820000 perm   7211 sec   (530 perm/sec)   p_kst 4.057592e-05   p_cons 2.521521e-01   p_joint 1.397906e-04

Joint ci ratio: 1.693063e-01	ci left: 1.281000e-04	ci right 1.520398e-04	k: 535	n:3830000
Cons ci ratio: 3.449619e-03	ci left: 2.517090e-01	ci right 2.525791e-01	k: 965711	n:3830000
KS ci ratio: 3.138447e-01	ci left: 3.434975e-05	ci right 4.736613e-05	k: 155	n:3830000
ZEB2   3830000 perm   7247 sec   (529 perm/sec)   p_kst 4.046997e-05   p_cons 2.521439e-01   p_joint 1.396867e-04

Joint ci ratio: 1.689913e-01	ci left: 1.282652e-04	ci right 1.521867e-04	k: 537	n:3840000
Cons ci ratio: 3.445140e-03	ci left: 2.517079e-01	ci right 2.525768e-01	k: 968226	n:3840000
KS ci ratio: 3.128436e-01	ci left: 3.450024e-05	ci right 4.752361e-05	k: 156	n:3840000
ZEB2   3840000 perm   7282 sec   (527 perm/sec)   p_kst 4.062500e-05   p_cons 2.521422e-01   p_joint 1.398437e-04

Joint ci ratio: 1.701018e-01	ci left: 1.261910e-04	ci right 1.498962e-04	k: 530	n:3850000
Cons ci ratio: 3.440508e-03	ci left: 2.517255e-01	ci right 2.525933e-01	k: 970813	n:3850000
KS ci ratio: 3.118520e-01	ci left: 3.465001e-05	ci right 4.768021e-05	k: 157	n:3850000
ZEB2   3850000 perm   7317 sec   (526 perm/sec)   p_kst 4.077922e-05   p_cons 2.521592e-01   p_joint 1.376623e-04

Joint ci ratio: 1.699418e-01	ci left: 1.261122e-04	ci right 1.497779e-04	k: 531	n:3860000
Cons ci ratio: 3.435854e-03	ci left: 2.517474e-01	ci right 2.526141e-01	k: 973417	n:3860000
KS ci ratio: 3.118520e-01	ci left: 3.456024e-05	ci right 4.755668e-05	k: 157	n:3860000
ZEB2   3860000 perm   7352 sec   (525 perm/sec)   p_kst 4.067358e-05   p_cons 2.521806e-01   p_joint 1.375648e-04

Joint ci ratio: 1.699419e-01	ci left: 1.257863e-04	ci right 1.493909e-04	k: 531	n:3870000
Cons ci ratio: 3.431273e-03	ci left: 2.517633e-01	ci right 2.526288e-01	k: 975998	n:3870000
KS ci ratio: 3.118520e-01	ci left: 3.447094e-05	ci right 4.743380e-05	k: 157	n:3870000
ZEB2   3870000 perm   7386 sec   (524 perm/sec)   p_kst 4.056848e-05   p_cons 2.521959e-01   p_joint 1.372093e-04

Joint ci ratio: 1.699419e-01	ci left: 1.254621e-04	ci right 1.490059e-04	k: 531	n:3880000
Cons ci ratio: 3.426780e-03	ci left: 2.517713e-01	ci right 2.526358e-01	k: 978549	n:3880000
KS ci ratio: 3.118521e-01	ci left: 3.438210e-05	ci right 4.731154e-05	k: 157	n:3880000
ZEB2   3880000 perm   7421 sec   (523 perm/sec)   p_kst 4.046392e-05   p_cons 2.522034e-01   p_joint 1.368557e-04

Joint ci ratio: 1.699419e-01	ci left: 1.251396e-04	ci right 1.486228e-04	k: 531	n:3890000
Cons ci ratio: 3.422415e-03	ci left: 2.517672e-01	ci right 2.526306e-01	k: 981053	n:3890000
KS ci ratio: 3.118521e-01	ci left: 3.429371e-05	ci right 4.718992e-05	k: 157	n:3890000
ZEB2   3890000 perm   7456 sec   (522 perm/sec)   p_kst 4.035990e-05   p_cons 2.521987e-01   p_joint 1.365039e-04

Joint ci ratio: 1.696234e-01	ci left: 1.253097e-04	ci right 1.487764e-04	k: 533	n:3900000
Cons ci ratio: 3.418019e-03	ci left: 2.517683e-01	ci right 2.526305e-01	k: 983577	n:3900000
KS ci ratio: 3.108698e-01	ci left: 3.444216e-05	ci right 4.734530e-05	k: 158	n:3900000
ZEB2   3900000 perm   7492 sec   (521 perm/sec)   p_kst 4.051282e-05   p_cons 2.521992e-01   p_joint 1.366667e-04

Joint ci ratio: 1.694648e-01	ci left: 1.252341e-04	ci right 1.486624e-04	k: 534	n:3910000
Cons ci ratio: 3.413766e-03	ci left: 2.517555e-01	ci right 2.526167e-01	k: 986047	n:3910000
KS ci ratio: 3.108699e-01	ci left: 3.435407e-05	ci right 4.722421e-05	k: 158	n:3910000
ZEB2   3910000 perm   7528 sec   (519 perm/sec)   p_kst 4.040921e-05   p_cons 2.521859e-01   p_joint 1.365729e-04

Joint ci ratio: 1.693066e-01	ci left: 1.251589e-04	ci right 1.485491e-04	k: 535	n:3920000
Cons ci ratio: 3.409409e-03	ci left: 2.517561e-01	ci right 2.526162e-01	k: 988569	n:3920000
KS ci ratio: 3.108699e-01	ci left: 3.426643e-05	ci right 4.710375e-05	k: 158	n:3920000
ZEB2   3920000 perm   7564 sec   (518 perm/sec)   p_kst 4.030612e-05   p_cons 2.521860e-01   p_joint 1.364796e-04

Joint ci ratio: 1.691489e-01	ci left: 1.250842e-04	ci right 1.484363e-04	k: 536	n:3930000
Cons ci ratio: 3.405176e-03	ci left: 2.517448e-01	ci right 2.526037e-01	k: 991044	n:3930000
KS ci ratio: 3.098969e-01	ci left: 3.441388e-05	ci right 4.725810e-05	k: 159	n:3930000
ZEB2   3930000 perm   7599 sec   (517 perm/sec)   p_kst 4.045802e-05   p_cons 2.521740e-01   p_joint 1.363868e-04

Joint ci ratio: 1.689916e-01	ci left: 1.250097e-04	ci right 1.483241e-04	k: 537	n:3940000
Cons ci ratio: 3.400970e-03	ci left: 2.517322e-01	ci right 2.525900e-01	k: 993514	n:3940000
KS ci ratio: 3.089329e-01	ci left: 3.456063e-05	ci right 4.741160e-05	k: 160	n:3940000
ZEB2   3940000 perm   7634 sec   (516 perm/sec)   p_kst 4.060914e-05   p_cons 2.521609e-01   p_joint 1.362944e-04

Joint ci ratio: 1.689917e-01	ci left: 1.246933e-04	ci right 1.479486e-04	k: 537	n:3950000
Cons ci ratio: 3.396612e-03	ci left: 2.517384e-01	ci right 2.525951e-01	k: 996058	n:3950000
KS ci ratio: 3.089329e-01	ci left: 3.447314e-05	ci right 4.729157e-05	k: 160	n:3950000
ZEB2   3950000 perm   7670 sec   (515 perm/sec)   p_kst 4.050633e-05   p_cons 2.521666e-01   p_joint 1.359494e-04

Joint ci ratio: 1.685224e-01	ci left: 1.251040e-04	ci right 1.483646e-04	k: 540	n:3960000
Cons ci ratio: 3.392240e-03	ci left: 2.517478e-01	ci right 2.526035e-01	k: 998615	n:3960000
KS ci ratio: 3.089330e-01	ci left: 3.438608e-05	ci right 4.717215e-05	k: 160	n:3960000
ZEB2   3960000 perm   7705 sec   (514 perm/sec)   p_kst 4.040404e-05   p_cons 2.521755e-01   p_joint 1.363636e-04

Joint ci ratio: 1.680571e-01	ci left: 1.255127e-04	ci right 1.487783e-04	k: 543	n:3970000
Cons ci ratio: 3.388059e-03	ci left: 2.517379e-01	ci right 2.525925e-01	k: 1001095	n:3970000
KS ci ratio: 3.089330e-01	ci left: 3.429947e-05	ci right 4.705333e-05	k: 160	n:3970000
ZEB2   3970000 perm   7741 sec   (513 perm/sec)   p_kst 4.030227e-05   p_cons 2.521650e-01   p_joint 1.367758e-04

Joint ci ratio: 1.679028e-01	ci left: 1.254380e-04	ci right 1.486663e-04	k: 544	n:3980000
Cons ci ratio: 3.383797e-03	ci left: 2.517388e-01	ci right 2.525923e-01	k: 1003618	n:3980000
KS ci ratio: 3.089330e-01	ci left: 3.421329e-05	ci right 4.693511e-05	k: 160	n:3980000
ZEB2   3980000 perm   7777 sec   (512 perm/sec)   p_kst 4.020101e-05   p_cons 2.521653e-01   p_joint 1.366834e-04

Joint ci ratio: 1.677490e-01	ci left: 1.253637e-04	ci right 1.485549e-04	k: 545	n:3990000
Cons ci ratio: 3.379466e-03	ci left: 2.517491e-01	ci right 2.526016e-01	k: 1006179	n:3990000
KS ci ratio: 3.089330e-01	ci left: 3.412754e-05	ci right 4.681747e-05	k: 160	n:3990000
ZEB2   3990000 perm   7813 sec   (511 perm/sec)   p_kst 4.010025e-05   p_cons 2.521752e-01   p_joint 1.365915e-04

Joint ci ratio: 1.674426e-01	ci left: 1.255294e-04	ci right 1.487044e-04	k: 547	n:4000000
Cons ci ratio: 3.375424e-03	ci left: 2.517290e-01	ci right 2.525804e-01	k: 1008618	n:4000000
KS ci ratio: 3.079780e-01	ci left: 3.427288e-05	ci right 4.696972e-05	k: 161	n:4000000
ZEB2   4000000 perm   7850 sec   (510 perm/sec)   p_kst 4.025000e-05   p_cons 2.521545e-01   p_joint 1.367500e-04

Joint ci ratio: 1.767164e-01	ci left: 1.118522e-04	ci right 1.337682e-04	k: 491	n:4010000
Cons ci ratio: 3.371156e-03	ci left: 2.517359e-01	ci right 2.525862e-01	k: 1011165	n:4010000
KS ci ratio: 3.079780e-01	ci left: 3.418741e-05	ci right 4.685259e-05	k: 161	n:4010000
ZEB2   4010000 perm   7887 sec   (508 perm/sec)   p_kst 4.014963e-05   p_cons 2.521608e-01   p_joint 1.224439e-04

Joint ci ratio: 1.761800e-01	ci left: 1.122872e-04	ci right 1.342146e-04	k: 494	n:4020000
Cons ci ratio: 3.367017e-03	ci left: 2.517300e-01	ci right 2.525793e-01	k: 1013661	n:4020000
KS ci ratio: 3.060943e-01	ci left: 3.456155e-05	ci right 4.727176e-05	k: 163	n:4020000
ZEB2   4020000 perm   7923 sec   (507 perm/sec)   p_kst 4.054726e-05   p_cons 2.521545e-01   p_joint 1.228856e-04

Joint ci ratio: 1.760023e-01	ci left: 1.122458e-04	ci right 1.341406e-04	k: 495	n:4030000
Cons ci ratio: 3.362984e-03	ci left: 2.517141e-01	ci right 2.525622e-01	k: 1016116	n:4030000
KS ci ratio: 3.060943e-01	ci left: 3.447579e-05	ci right 4.715446e-05	k: 163	n:4030000
ZEB2   4030000 perm   7960 sec   (506 perm/sec)   p_kst 4.044665e-05   p_cons 2.521380e-01   p_joint 1.228288e-04

Joint ci ratio: 1.758252e-01	ci left: 1.122046e-04	ci right 1.340670e-04	k: 496	n:4040000
Cons ci ratio: 3.358746e-03	ci left: 2.517229e-01	ci right 2.525700e-01	k: 1018671	n:4040000
KS ci ratio: 3.060943e-01	ci left: 3.439046e-05	ci right 4.703774e-05	k: 163	n:4040000
ZEB2   4040000 perm   7997 sec   (505 perm/sec)   p_kst 4.034653e-05   p_cons 2.521463e-01   p_joint 1.227723e-04

Joint ci ratio: 1.756486e-01	ci left: 1.121636e-04	ci right 1.339937e-04	k: 497	n:4050000
Cons ci ratio: 3.354556e-03	ci left: 2.517280e-01	ci right 2.525741e-01	k: 1021211	n:4050000
KS ci ratio: 3.051653e-01	ci left: 3.453352e-05	ci right 4.718739e-05	k: 164	n:4050000
ZEB2   4050000 perm   8033 sec   (504 perm/sec)   p_kst 4.049383e-05   p_cons 2.521509e-01   p_joint 1.227160e-04

Joint ci ratio: 1.754725e-01	ci left: 1.121228e-04	ci right 1.339208e-04	k: 498	n:4060000
Cons ci ratio: 3.350298e-03	ci left: 2.517424e-01	ci right 2.525875e-01	k: 1023789	n:4060000
KS ci ratio: 3.051653e-01	ci left: 3.444846e-05	ci right 4.707116e-05	k: 164	n:4060000
ZEB2   4060000 perm   8069 sec   (503 perm/sec)   p_kst 4.039409e-05   p_cons 2.521648e-01   p_joint 1.226601e-04

Joint ci ratio: 1.752969e-01	ci left: 1.120823e-04	ci right 1.338483e-04	k: 499	n:4070000
Cons ci ratio: 3.346127e-03	ci left: 2.517489e-01	ci right 2.525930e-01	k: 1026335	n:4070000
KS ci ratio: 3.051654e-01	ci left: 3.436382e-05	ci right 4.695551e-05	k: 164	n:4070000
ZEB2   4070000 perm   8107 sec   (502 perm/sec)   p_kst 4.029484e-05   p_cons 2.521708e-01   p_joint 1.226044e-04

Joint ci ratio: 1.749474e-01	ci left: 1.122763e-04	ci right 1.340319e-04	k: 501	n:4080000
Cons ci ratio: 3.342112e-03	ci left: 2.517395e-01	ci right 2.525825e-01	k: 1028816	n:4080000
KS ci ratio: 3.033325e-01	ci left: 3.473238e-05	ci right 4.736792e-05	k: 166	n:4080000
ZEB2   4080000 perm   8143 sec   (501 perm/sec)   p_kst 4.068627e-05   p_cons 2.521608e-01   p_joint 1.227941e-04

Joint ci ratio: 1.749474e-01	ci left: 1.120017e-04	ci right 1.337041e-04	k: 501	n:4090000
Cons ci ratio: 3.337818e-03	ci left: 2.517633e-01	ci right 2.526053e-01	k: 1031433	n:4090000
KS ci ratio: 3.033325e-01	ci left: 3.464746e-05	ci right 4.725211e-05	k: 166	n:4090000
ZEB2   4090000 perm   8180 sec   (500 perm/sec)   p_kst 4.058680e-05   p_cons 2.521841e-01   p_joint 1.224939e-04

Joint ci ratio: 1.744269e-01	ci left: 1.124283e-04	ci right 1.341417e-04	k: 504	n:4100000
Cons ci ratio: 3.333665e-03	ci left: 2.517729e-01	ci right 2.526138e-01	k: 1033992	n:4100000
KS ci ratio: 3.024283e-01	ci left: 3.478832e-05	ci right 4.739924e-05	k: 167	n:4100000
ZEB2   4100000 perm   8217 sec   (499 perm/sec)   p_kst 4.073171e-05   p_cons 2.521932e-01   p_joint 1.229268e-04

Joint ci ratio: 1.739111e-01	ci left: 1.128528e-04	ci right 1.345770e-04	k: 507	n:4110000
Cons ci ratio: 3.329488e-03	ci left: 2.517868e-01	ci right 2.526267e-01	k: 1036569	n:4110000
KS ci ratio: 2.997636e-01	ci left: 3.537848e-05	ci right 4.806881e-05	k: 170	n:4110000
ZEB2   4110000 perm   8254 sec   (498 perm/sec)   p_kst 4.136253e-05   p_cons 2.522066e-01   p_joint 1.233577e-04

Joint ci ratio: 1.733998e-01	ci left: 1.132754e-04	ci right 1.350102e-04	k: 510	n:4120000
Cons ci ratio: 3.325452e-03	ci left: 2.517865e-01	ci right 2.526255e-01	k: 1039088	n:4120000
KS ci ratio: 2.997636e-01	ci left: 3.529261e-05	ci right 4.795214e-05	k: 170	n:4120000
ZEB2   4120000 perm   8292 sec   (497 perm/sec)   p_kst 4.126214e-05   p_cons 2.522058e-01   p_joint 1.237864e-04

Joint ci ratio: 1.733998e-01	ci left: 1.130012e-04	ci right 1.346833e-04	k: 510	n:4130000
Cons ci ratio: 3.321319e-03	ci left: 2.517989e-01	ci right 2.526368e-01	k: 1041659	n:4130000
KS ci ratio: 2.997637e-01	ci left: 3.520715e-05	ci right 4.783603e-05	k: 170	n:4130000
ZEB2   4130000 perm   8329 sec   (496 perm/sec)   p_kst 4.116223e-05   p_cons 2.522177e-01   p_joint 1.234867e-04

Joint ci ratio: 1.728930e-01	ci left: 1.134215e-04	ci right 1.351140e-04	k: 513	n:4140000
Cons ci ratio: 3.317516e-03	ci left: 2.517755e-01	ci right 2.526123e-01	k: 1044082	n:4140000
KS ci ratio: 2.988910e-01	ci left: 3.534552e-05	ci right 4.798012e-05	k: 171	n:4140000
ZEB2   4140000 perm   8366 sec   (495 perm/sec)   p_kst 4.130435e-05   p_cons 2.521937e-01   p_joint 1.239130e-04

Joint ci ratio: 1.728931e-01	ci left: 1.131481e-04	ci right 1.347884e-04	k: 513	n:4150000
Cons ci ratio: 3.313387e-03	ci left: 2.517907e-01	ci right 2.526266e-01	k: 1046665	n:4150000
KS ci ratio: 2.988910e-01	ci left: 3.526035e-05	ci right 4.786450e-05	k: 171	n:4150000
ZEB2   4150000 perm   8404 sec   (494 perm/sec)   p_kst 4.120482e-05   p_cons 2.522084e-01   p_joint 1.236145e-04

Joint ci ratio: 1.728931e-01	ci left: 1.128762e-04	ci right 1.344644e-04	k: 513	n:4160000
Cons ci ratio: 3.309396e-03	ci left: 2.517919e-01	ci right 2.526267e-01	k: 1049190	n:4160000
KS ci ratio: 2.988910e-01	ci left: 3.517559e-05	ci right 4.774944e-05	k: 171	n:4160000
ZEB2   4160000 perm   8442 sec   (493 perm/sec)   p_kst 4.110577e-05   p_cons 2.522091e-01   p_joint 1.233173e-04

Joint ci ratio: 1.727252e-01	ci left: 1.128349e-04	ci right 1.343921e-04	k: 514	n:4170000
Cons ci ratio: 3.305268e-03	ci left: 2.518103e-01	ci right 2.526442e-01	k: 1051787	n:4170000
KS ci ratio: 2.980259e-01	ci left: 3.531309e-05	ci right 4.789265e-05	k: 172	n:4170000
ZEB2   4170000 perm   8479 sec   (492 perm/sec)   p_kst 4.124700e-05   p_cons 2.522271e-01   p_joint 1.232614e-04

Joint ci ratio: 1.725577e-01	ci left: 1.127939e-04	ci right 1.343201e-04	k: 515	n:4180000
Cons ci ratio: 3.301328e-03	ci left: 2.518091e-01	ci right 2.526420e-01	k: 1054302	n:4180000
KS ci ratio: 2.980259e-01	ci left: 3.522861e-05	ci right 4.777807e-05	k: 172	n:4180000
ZEB2   4180000 perm   8517 sec   (491 perm/sec)   p_kst 4.114833e-05   p_cons 2.522254e-01   p_joint 1.232057e-04

Joint ci ratio: 1.751222e-01	ci left: 1.091004e-04	ci right 1.302640e-04	k: 500	n:4190000
Cons ci ratio: 3.297334e-03	ci left: 2.518155e-01	ci right 2.526474e-01	k: 1056849	n:4190000
KS ci ratio: 2.963179e-01	ci left: 3.558628e-05	ci right 4.817685e-05	k: 174	n:4190000
ZEB2   4190000 perm   8554 sec   (490 perm/sec)   p_kst 4.152745e-05   p_cons 2.522313e-01   p_joint 1.193317e-04

Joint ci ratio: 1.789125e-01	ci left: 1.040622e-04	ci right 1.247326e-04	k: 479	n:4200000
Cons ci ratio: 3.293503e-03	ci left: 2.518050e-01	ci right 2.526359e-01	k: 1059325	n:4200000
KS ci ratio: 2.963179e-01	ci left: 3.550155e-05	ci right 4.806214e-05	k: 174	n:4200000
ZEB2   4200000 perm   8592 sec   (489 perm/sec)   p_kst 4.142857e-05   p_cons 2.522202e-01   p_joint 1.140476e-04

Joint ci ratio: 1.787264e-01	ci left: 1.040419e-04	ci right 1.246845e-04	k: 480	n:4210000
Cons ci ratio: 3.289635e-03	ci left: 2.518002e-01	ci right 2.526301e-01	k: 1061825	n:4210000
KS ci ratio: 2.963180e-01	ci left: 3.541722e-05	ci right 4.794798e-05	k: 174	n:4210000
ZEB2   4210000 perm   8630 sec   (488 perm/sec)   p_kst 4.133017e-05   p_cons 2.522150e-01   p_joint 1.140143e-04

Joint ci ratio: 1.940595e-01	ci left: 8.730245e-05	ci right 1.062857e-04	k: 407	n:4220000
Cons ci ratio: 3.285686e-03	ci left: 2.518063e-01	ci right 2.526353e-01	k: 1064371	n:4220000
KS ci ratio: 2.938102e-01	ci left: 3.599158e-05	ci right 4.859772e-05	k: 177	n:4220000
ZEB2   4220000 perm   8668 sec   (487 perm/sec)   p_kst 4.194313e-05   p_cons 2.522206e-01   p_joint 9.644550e-05

Joint ci ratio: 1.935856e-01	ci left: 8.754594e-05	ci right 1.065301e-04	k: 409	n:4230000
Cons ci ratio: 3.281866e-03	ci left: 2.517992e-01	ci right 2.526271e-01	k: 1066861	n:4230000
KS ci ratio: 2.938102e-01	ci left: 3.590650e-05	ci right 4.848284e-05	k: 177	n:4230000
ZEB2   4230000 perm   8707 sec   (486 perm/sec)   p_kst 4.184397e-05   p_cons 2.522130e-01   p_joint 9.669031e-05

Joint ci ratio: 1.931151e-01	ci left: 8.778833e-05	ci right 1.067734e-04	k: 411	n:4240000
Cons ci ratio: 3.277936e-03	ci left: 2.518063e-01	ci right 2.526332e-01	k: 1069411	n:4240000
KS ci ratio: 2.929883e-01	ci left: 3.604031e-05	ci right 4.862165e-05	k: 178	n:4240000
ZEB2   4240000 perm   8745 sec   (485 perm/sec)   p_kst 4.198113e-05   p_cons 2.522196e-01   p_joint 9.693396e-05

Joint ci ratio: 1.931152e-01	ci left: 8.758177e-05	ci right 1.065222e-04	k: 411	n:4250000
Cons ci ratio: 3.274053e-03	ci left: 2.518095e-01	ci right 2.526355e-01	k: 1071945	n:4250000
KS ci ratio: 2.929884e-01	ci left: 3.595551e-05	ci right 4.850724e-05	k: 178	n:4250000
ZEB2   4250000 perm   8783 sec   (484 perm/sec)   p_kst 4.188235e-05   p_cons 2.522224e-01   p_joint 9.670588e-05

Joint ci ratio: 1.928812e-01	ci left: 8.759957e-05	ci right 1.065182e-04	k: 412	n:4260000
Cons ci ratio: 3.270127e-03	ci left: 2.518193e-01	ci right 2.526444e-01	k: 1074507	n:4260000
KS ci ratio: 2.929884e-01	ci left: 3.587110e-05	ci right 4.839338e-05	k: 178	n:4260000
ZEB2   4260000 perm   8822 sec   (483 perm/sec)   p_kst 4.178404e-05   p_cons 2.522317e-01   p_joint 9.671362e-05

Joint ci ratio: 1.924159e-01	ci left: 8.784022e-05	ci right 1.067597e-04	k: 414	n:4270000
Cons ci ratio: 3.266347e-03	ci left: 2.518139e-01	ci right 2.526380e-01	k: 1077004	n:4270000
KS ci ratio: 2.921734e-01	ci left: 3.600410e-05	ci right 4.853137e-05	k: 179	n:4270000
ZEB2   4270000 perm   8860 sec   (482 perm/sec)   p_kst 4.192037e-05   p_cons 2.522258e-01   p_joint 9.695550e-05

Joint ci ratio: 1.921844e-01	ci left: 8.785738e-05	ci right 1.067551e-04	k: 415	n:4280000
Cons ci ratio: 3.262635e-03	ci left: 2.518022e-01	ci right 2.526253e-01	k: 1079474	n:4280000
KS ci ratio: 2.913651e-01	ci left: 3.613653e-05	ci right 4.866868e-05	k: 180	n:4280000
ZEB2   4280000 perm   8899 sec   (481 perm/sec)   p_kst 4.205607e-05   p_cons 2.522136e-01   p_joint 9.696262e-05

Joint ci ratio: 1.917241e-01	ci left: 8.809638e-05	ci right 1.069948e-04	k: 417	n:4290000
Cons ci ratio: 3.258760e-03	ci left: 2.518108e-01	ci right 2.526329e-01	k: 1082031	n:4290000
KS ci ratio: 2.905635e-01	ci left: 3.626838e-05	ci right 4.880529e-05	k: 181	n:4290000
ZEB2   4290000 perm   8937 sec   (480 perm/sec)   p_kst 4.219114e-05   p_cons 2.522217e-01   p_joint 9.720280e-05

Joint ci ratio: 1.914952e-01	ci left: 8.811291e-05	ci right 1.069897e-04	k: 418	n:4300000
Cons ci ratio: 3.255037e-03	ci left: 2.518033e-01	ci right 2.526245e-01	k: 1084519	n:4300000
KS ci ratio: 2.897685e-01	ci left: 3.639967e-05	ci right 4.894123e-05	k: 182	n:4300000
ZEB2   4300000 perm   8976 sec   (479 perm/sec)   p_kst 4.232558e-05   p_cons 2.522137e-01   p_joint 9.720930e-05

Joint ci ratio: 1.914952e-01	ci left: 8.790847e-05	ci right 1.067415e-04	k: 418	n:4310000
Cons ci ratio: 3.251293e-03	ci left: 2.517998e-01	ci right 2.526200e-01	k: 1087024	n:4310000
KS ci ratio: 2.897686e-01	ci left: 3.631522e-05	ci right 4.882768e-05	k: 182	n:4310000
ZEB2   4310000 perm   9015 sec   (478 perm/sec)   p_kst 4.222738e-05   p_cons 2.522097e-01   p_joint 9.698376e-05

Joint ci ratio: 1.914952e-01	ci left: 8.770498e-05	ci right 1.064944e-04	k: 418	n:4320000
Cons ci ratio: 3.247448e-03	ci left: 2.518095e-01	ci right 2.526288e-01	k: 1089586	n:4320000
KS ci ratio: 2.897686e-01	ci left: 3.623116e-05	ci right 4.871465e-05	k: 182	n:4320000
ZEB2   4320000 perm   9055 sec   (477 perm/sec)   p_kst 4.212963e-05   p_cons 2.522190e-01   p_joint 9.675926e-05

Joint ci ratio: 1.917242e-01	ci left: 8.728256e-05	ci right 1.060064e-04	k: 417	n:4330000
Cons ci ratio: 3.243556e-03	ci left: 2.518263e-01	ci right 2.526447e-01	k: 1092179	n:4330000
KS ci ratio: 2.881979e-01	ci left: 3.657590e-05	ci right 4.909742e-05	k: 184	n:4330000
ZEB2   4330000 perm   9094 sec   (476 perm/sec)   p_kst 4.249423e-05   p_cons 2.522353e-01   p_joint 9.630485e-05

Joint ci ratio: 1.917242e-01	ci left: 8.708144e-05	ci right 1.057622e-04	k: 417	n:4340000
Cons ci ratio: 3.239871e-03	ci left: 2.518205e-01	ci right 2.526379e-01	k: 1094674	n:4340000
KS ci ratio: 2.881980e-01	ci left: 3.649162e-05	ci right 4.898430e-05	k: 184	n:4340000
ZEB2   4340000 perm   9134 sec   (475 perm/sec)   p_kst 4.239631e-05   p_cons 2.522290e-01   p_joint 9.608295e-05

Joint ci ratio: 1.917242e-01	ci left: 8.688126e-05	ci right 1.055191e-04	k: 417	n:4350000
Cons ci ratio: 3.236072e-03	ci left: 2.518294e-01	ci right 2.526459e-01	k: 1097233	n:4350000
KS ci ratio: 2.881980e-01	ci left: 3.640774e-05	ci right 4.887169e-05	k: 184	n:4350000
ZEB2   4350000 perm   9174 sec   (474 perm/sec)   p_kst 4.229885e-05   p_cons 2.522375e-01   p_joint 9.586207e-05

Joint ci ratio: 1.917243e-01	ci left: 8.668199e-05	ci right 1.052770e-04	k: 417	n:4360000
Cons ci ratio: 3.232206e-03	ci left: 2.518477e-01	ci right 2.526632e-01	k: 1099833	n:4360000
KS ci ratio: 2.874222e-01	ci left: 3.653703e-05	ci right 4.900547e-05	k: 185	n:4360000
ZEB2   4360000 perm   9215 sec   (473 perm/sec)   p_kst 4.243119e-05   p_cons 2.522553e-01   p_joint 9.564220e-05

Joint ci ratio: 1.917243e-01	ci left: 8.648363e-05	ci right 1.050361e-04	k: 417	n:4370000
Cons ci ratio: 3.228601e-03	ci left: 2.518370e-01	ci right 2.526516e-01	k: 1102307	n:4370000
KS ci ratio: 2.874222e-01	ci left: 3.645343e-05	ci right 4.889333e-05	k: 185	n:4370000
ZEB2   4370000 perm   9255 sec   (472 perm/sec)   p_kst 4.233410e-05   p_cons 2.522442e-01   p_joint 9.542334e-05

Joint ci ratio: 1.912672e-01	ci left: 8.672091e-05	ci right 1.052748e-04	k: 419	n:4380000
Cons ci ratio: 3.224992e-03	ci left: 2.518283e-01	ci right 2.526419e-01	k: 1104789	n:4380000
KS ci ratio: 2.866526e-01	ci left: 3.658208e-05	ci right 4.902640e-05	k: 186	n:4380000
ZEB2   4380000 perm   9295 sec   (471 perm/sec)   p_kst 4.246575e-05   p_cons 2.522349e-01   p_joint 9.566210e-05

Joint ci ratio: 1.908134e-01	ci left: 8.695716e-05	ci right 1.055124e-04	k: 421	n:4390000
Cons ci ratio: 3.221355e-03	ci left: 2.518243e-01	ci right 2.526371e-01	k: 1107292	n:4390000
KS ci ratio: 2.866527e-01	ci left: 3.649874e-05	ci right 4.891472e-05	k: 186	n:4390000
ZEB2   4390000 perm   9335 sec   (470 perm/sec)   p_kst 4.236902e-05   p_cons 2.522305e-01   p_joint 9.589977e-05

Joint ci ratio: 1.905877e-01	ci left: 8.697595e-05	ci right 1.055107e-04	k: 422	n:4400000
Cons ci ratio: 3.217671e-03	ci left: 2.518272e-01	ci right 2.526390e-01	k: 1109825	n:4400000
KS ci ratio: 2.866527e-01	ci left: 3.641579e-05	ci right 4.880355e-05	k: 186	n:4400000
ZEB2   4400000 perm   9376 sec   (469 perm/sec)   p_kst 4.227273e-05   p_cons 2.522330e-01   p_joint 9.590909e-05

Joint ci ratio: 1.905878e-01	ci left: 8.677873e-05	ci right 1.052714e-04	k: 422	n:4410000
Cons ci ratio: 3.214006e-03	ci left: 2.518294e-01	ci right 2.526403e-01	k: 1112355	n:4410000
KS ci ratio: 2.866527e-01	ci left: 3.633322e-05	ci right 4.869289e-05	k: 186	n:4410000
ZEB2   4410000 perm   9417 sec   (468 perm/sec)   p_kst 4.217687e-05   p_cons 2.522347e-01   p_joint 9.569161e-05

Joint ci ratio: 1.903629e-01	ci left: 8.679785e-05	ci right 1.052703e-04	k: 423	n:4420000
Cons ci ratio: 3.210437e-03	ci left: 2.518219e-01	ci right 2.526318e-01	k: 1114842	n:4420000
KS ci ratio: 2.858893e-01	ci left: 3.646102e-05	ci right 4.882517e-05	k: 187	n:4420000
ZEB2   4420000 perm   9459 sec   (467 perm/sec)   p_kst 4.230769e-05   p_cons 2.522267e-01   p_joint 9.570136e-05

Joint ci ratio: 1.903629e-01	ci left: 8.660192e-05	ci right 1.050326e-04	k: 423	n:4430000
Cons ci ratio: 3.206791e-03	ci left: 2.518248e-01	ci right 2.526338e-01	k: 1117375	n:4430000
KS ci ratio: 2.858893e-01	ci left: 3.637871e-05	ci right 4.871495e-05	k: 187	n:4430000
ZEB2   4430000 perm   9500 sec   (466 perm/sec)   p_kst 4.221219e-05   p_cons 2.522291e-01   p_joint 9.548533e-05

Joint ci ratio: 1.899155e-01	ci left: 8.683588e-05	ci right 1.052679e-04	k: 425	n:4440000
Cons ci ratio: 3.203151e-03	ci left: 2.518283e-01	ci right 2.526364e-01	k: 1119911	n:4440000
KS ci ratio: 2.843806e-01	ci left: 3.671502e-05	ci right 4.908781e-05	k: 189	n:4440000
ZEB2   4440000 perm   9542 sec   (465 perm/sec)   p_kst 4.256757e-05   p_cons 2.522322e-01   p_joint 9.572072e-05

Joint ci ratio: 1.896930e-01	ci left: 8.685478e-05	ci right 1.052668e-04	k: 426	n:4450000
Cons ci ratio: 3.199491e-03	ci left: 2.518356e-01	ci right 2.526429e-01	k: 1122464	n:4450000
KS ci ratio: 2.843806e-01	ci left: 3.663252e-05	ci right 4.897750e-05	k: 189	n:4450000
ZEB2   4450000 perm   9583 sec   (464 perm/sec)   p_kst 4.247191e-05   p_cons 2.522391e-01   p_joint 9.573034e-05

Joint ci ratio: 1.894712e-01	ci left: 8.687362e-05	ci right 1.052656e-04	k: 427	n:4460000
Cons ci ratio: 3.195873e-03	ci left: 2.518396e-01	ci right 2.526459e-01	k: 1125002	n:4460000
KS ci ratio: 2.843806e-01	ci left: 3.655038e-05	ci right 4.886768e-05	k: 189	n:4460000
ZEB2   4460000 perm   9624 sec   (463 perm/sec)   p_kst 4.237668e-05   p_cons 2.522426e-01   p_joint 9.573991e-05

Joint ci ratio: 1.894713e-01	ci left: 8.667927e-05	ci right 1.050301e-04	k: 427	n:4470000
Cons ci ratio: 3.192210e-03	ci left: 2.518502e-01	ci right 2.526557e-01	k: 1127570	n:4470000
KS ci ratio: 2.843806e-01	ci left: 3.646861e-05	ci right 4.875836e-05	k: 189	n:4470000
ZEB2   4470000 perm   9664 sec   (463 perm/sec)   p_kst 4.228188e-05   p_cons 2.522528e-01   p_joint 9.552573e-05

Joint ci ratio: 1.890301e-01	ci left: 8.691107e-05	ci right 1.052632e-04	k: 429	n:4480000
Cons ci ratio: 3.188546e-03	ci left: 2.518624e-01	ci right 2.526670e-01	k: 1130145	n:4480000
KS ci ratio: 2.843806e-01	ci left: 3.638721e-05	ci right 4.864952e-05	k: 189	n:4480000
ZEB2   4480000 perm   9705 sec   (462 perm/sec)   p_kst 4.218750e-05   p_cons 2.522645e-01   p_joint 9.575893e-05

Joint ci ratio: 1.890301e-01	ci left: 8.671750e-05	ci right 1.050288e-04	k: 429	n:4490000
Cons ci ratio: 3.185092e-03	ci left: 2.518511e-01	ci right 2.526548e-01	k: 1132615	n:4490000
KS ci ratio: 2.843806e-01	ci left: 3.630617e-05	ci right 4.854117e-05	k: 189	n:4490000
ZEB2   4490000 perm   9746 sec   (461 perm/sec)   p_kst 4.209354e-05   p_cons 2.522528e-01   p_joint 9.554566e-05

Joint ci ratio: 1.885920e-01	ci left: 8.694823e-05	ci right 1.052608e-04	k: 431	n:4500000
Cons ci ratio: 3.181513e-03	ci left: 2.518561e-01	ci right 2.526589e-01	k: 1135158	n:4500000
KS ci ratio: 2.836352e-01	ci left: 3.643188e-05	ci right 4.867131e-05	k: 190	n:4500000
ZEB2   4500000 perm   9788 sec   (460 perm/sec)   p_kst 4.222222e-05   p_cons 2.522573e-01   p_joint 9.577778e-05

Joint ci ratio: 1.883741e-01	ci left: 8.696671e-05	ci right 1.052596e-04	k: 432	n:4510000
Cons ci ratio: 3.177873e-03	ci left: 2.518697e-01	ci right 2.526716e-01	k: 1137740	n:4510000
KS ci ratio: 2.836352e-01	ci left: 3.635110e-05	ci right 4.856339e-05	k: 190	n:4510000
ZEB2   4510000 perm   9830 sec   (459 perm/sec)   p_kst 4.212860e-05   p_cons 2.522705e-01   p_joint 9.578714e-05

Joint ci ratio: 1.883741e-01	ci left: 8.677431e-05	ci right 1.050267e-04	k: 432	n:4520000
Cons ci ratio: 3.174232e-03	ci left: 2.518848e-01	ci right 2.526858e-01	k: 1140329	n:4520000
KS ci ratio: 2.836352e-01	ci left: 3.627068e-05	ci right 4.845595e-05	k: 190	n:4520000
ZEB2   4520000 perm   9871 sec   (458 perm/sec)   p_kst 4.203540e-05   p_cons 2.522852e-01   p_joint 9.557522e-05

Joint ci ratio: 1.881570e-01	ci left: 8.679310e-05	ci right 1.050260e-04	k: 433	n:4530000
Cons ci ratio: 3.170840e-03	ci left: 2.518718e-01	ci right 2.526720e-01	k: 1142791	n:4530000
KS ci ratio: 2.821617e-01	ci left: 3.660079e-05	ci right 4.882172e-05	k: 192	n:4530000
ZEB2   4530000 perm   9912 sec   (457 perm/sec)   p_kst 4.238411e-05   p_cons 2.522717e-01   p_joint 9.558499e-05

Joint ci ratio: 1.881570e-01	ci left: 8.660192e-05	ci right 1.047947e-04	k: 433	n:4540000
Cons ci ratio: 3.167267e-03	ci left: 2.518816e-01	ci right 2.526808e-01	k: 1145356	n:4540000
KS ci ratio: 2.821617e-01	ci left: 3.652018e-05	ci right 4.871419e-05	k: 192	n:4540000
ZEB2   4540000 perm   9953 sec   (456 perm/sec)   p_kst 4.229075e-05   p_cons 2.522811e-01   p_joint 9.537445e-05

Joint ci ratio: 1.881570e-01	ci left: 8.641159e-05	ci right 1.045643e-04	k: 433	n:4550000
Cons ci ratio: 3.163766e-03	ci left: 2.518843e-01	ci right 2.526826e-01	k: 1147889	n:4550000
KS ci ratio: 2.821618e-01	ci left: 3.643991e-05	ci right 4.860712e-05	k: 192	n:4550000
ZEB2   4550000 perm   9994 sec   (455 perm/sec)   p_kst 4.219780e-05   p_cons 2.522833e-01   p_joint 9.516484e-05

Joint ci ratio: 1.875100e-01	ci left: 8.684905e-05	ci right 1.050238e-04	k: 436	n:4560000
Cons ci ratio: 3.160271e-03	ci left: 2.518876e-01	ci right 2.526851e-01	k: 1150425	n:4560000
KS ci ratio: 2.814336e-01	ci left: 3.656380e-05	ci right 4.873528e-05	k: 193	n:4560000
ZEB2   4560000 perm   10035 sec   (454 perm/sec)   p_kst 4.232456e-05   p_cons 2.522862e-01   p_joint 9.561404e-05

Joint ci ratio: 1.875100e-01	ci left: 8.665901e-05	ci right 1.047940e-04	k: 436	n:4570000
Cons ci ratio: 3.156962e-03	ci left: 2.518701e-01	ci right 2.526667e-01	k: 1152866	n:4570000
KS ci ratio: 2.814336e-01	ci left: 3.648379e-05	ci right 4.862864e-05	k: 193	n:4570000
ZEB2   4570000 perm   10077 sec   (454 perm/sec)   p_kst 4.223195e-05   p_cons 2.522683e-01   p_joint 9.540481e-05

Joint ci ratio: 1.870824e-01	ci left: 8.688600e-05	ci right 1.050223e-04	k: 438	n:4580000
Cons ci ratio: 3.153458e-03	ci left: 2.518772e-01	ci right 2.526729e-01	k: 1155419	n:4580000
KS ci ratio: 2.814336e-01	ci left: 3.640413e-05	ci right 4.852247e-05	k: 193	n:4580000
ZEB2   4580000 perm   10118 sec   (453 perm/sec)   p_kst 4.213974e-05   p_cons 2.522749e-01   p_joint 9.563319e-05

Joint ci ratio: 1.870824e-01	ci left: 8.669671e-05	ci right 1.047935e-04	k: 438	n:4590000
Cons ci ratio: 3.149957e-03	ci left: 2.518853e-01	ci right 2.526802e-01	k: 1157977	n:4590000
KS ci ratio: 2.814336e-01	ci left: 3.632482e-05	ci right 4.841675e-05	k: 193	n:4590000
ZEB2   4590000 perm   10159 sec   (452 perm/sec)   p_kst 4.204793e-05   p_cons 2.522826e-01   p_joint 9.542484e-05

Joint ci ratio: 1.868697e-01	ci left: 8.671545e-05	ci right 1.047933e-04	k: 439	n:4600000
Cons ci ratio: 3.146556e-03	ci left: 2.518827e-01	ci right 2.526767e-01	k: 1160486	n:4600000
KS ci ratio: 2.814336e-01	ci left: 3.624585e-05	ci right 4.831150e-05	k: 193	n:4600000
ZEB2   4600000 perm   10200 sec   (451 perm/sec)   p_kst 4.195652e-05   p_cons 2.522796e-01   p_joint 9.543478e-05

Joint ci ratio: 1.866577e-01	ci left: 8.673413e-05	ci right 1.047930e-04	k: 440	n:4610000
Cons ci ratio: 3.143092e-03	ci left: 2.518890e-01	ci right 2.526822e-01	k: 1163036	n:4610000
KS ci ratio: 2.807111e-01	ci left: 3.636886e-05	ci right 4.843887e-05	k: 194	n:4610000
ZEB2   4610000 perm   10241 sec   (450 perm/sec)   p_kst 4.208243e-05   p_cons 2.522855e-01   p_joint 9.544469e-05

Joint ci ratio: 1.864464e-01	ci left: 8.675274e-05	ci right 1.047927e-04	k: 441	n:4620000
Cons ci ratio: 3.139674e-03	ci left: 2.518912e-01	ci right 2.526835e-01	k: 1165567	n:4620000
KS ci ratio: 2.799940e-01	ci left: 3.649138e-05	ci right 4.856565e-05	k: 195	n:4620000
ZEB2   4620000 perm   10283 sec   (449 perm/sec)   p_kst 4.220779e-05   p_cons 2.522872e-01   p_joint 9.545455e-05

Joint ci ratio: 1.862359e-01	ci left: 8.677127e-05	ci right 1.047924e-04	k: 442	n:4630000
Cons ci ratio: 3.136344e-03	ci left: 2.518841e-01	ci right 2.526756e-01	k: 1168055	n:4630000
KS ci ratio: 2.799940e-01	ci left: 3.641256e-05	ci right 4.846076e-05	k: 195	n:4630000
ZEB2   4630000 perm   10325 sec   (448 perm/sec)   p_kst 4.211663e-05   p_cons 2.522797e-01   p_joint 9.546436e-05

Joint ci ratio: 1.864465e-01	ci left: 8.637880e-05	ci right 1.043410e-04	k: 441	n:4640000
Cons ci ratio: 3.132816e-03	ci left: 2.519023e-01	ci right 2.526929e-01	k: 1170660	n:4640000
KS ci ratio: 2.785763e-01	ci left: 3.673494e-05	ci right 4.881746e-05	k: 197	n:4640000
ZEB2   4640000 perm   10367 sec   (448 perm/sec)   p_kst 4.245690e-05   p_cons 2.522974e-01   p_joint 9.504310e-05

Joint ci ratio: 1.864465e-01	ci left: 8.619304e-05	ci right 1.041167e-04	k: 441	n:4650000
Cons ci ratio: 3.129435e-03	ci left: 2.519040e-01	ci right 2.526937e-01	k: 1173189	n:4650000
KS ci ratio: 2.785763e-01	ci left: 3.665594e-05	ci right 4.871248e-05	k: 197	n:4650000
ZEB2   4650000 perm   10409 sec   (447 perm/sec)   p_kst 4.236559e-05   p_cons 2.522987e-01   p_joint 9.483871e-05

Joint ci ratio: 1.864465e-01	ci left: 8.600807e-05	ci right 1.038932e-04	k: 441	n:4660000
Cons ci ratio: 3.126233e-03	ci left: 2.518853e-01	ci right 2.526742e-01	k: 1175623	n:4660000
KS ci ratio: 2.785763e-01	ci left: 3.657728e-05	ci right 4.860794e-05	k: 197	n:4660000
ZEB2   4660000 perm   10451 sec   (446 perm/sec)   p_kst 4.227468e-05   p_cons 2.522796e-01   p_joint 9.463519e-05

Joint ci ratio: 1.864465e-01	ci left: 8.582390e-05	ci right 1.036708e-04	k: 441	n:4670000
Cons ci ratio: 3.122849e-03	ci left: 2.518901e-01	ci right 2.526781e-01	k: 1178166	n:4670000
KS ci ratio: 2.785763e-01	ci left: 3.649895e-05	ci right 4.850386e-05	k: 197	n:4670000
ZEB2   4670000 perm   10493 sec   (445 perm/sec)   p_kst 4.218415e-05   p_cons 2.522839e-01   p_joint 9.443255e-05

Joint ci ratio: 1.864466e-01	ci left: 8.564052e-05	ci right 1.034492e-04	k: 441	n:4680000
Cons ci ratio: 3.119597e-03	ci left: 2.518801e-01	ci right 2.526673e-01	k: 1180640	n:4680000
KS ci ratio: 2.785763e-01	ci left: 3.642096e-05	ci right 4.840022e-05	k: 197	n:4680000
ZEB2   4680000 perm   10536 sec   (444 perm/sec)   p_kst 4.209402e-05   p_cons 2.522735e-01   p_joint 9.423077e-05

Joint ci ratio: 1.862360e-01	ci left: 8.566119e-05	ci right 1.034518e-04	k: 442	n:4690000
Cons ci ratio: 3.116283e-03	ci left: 2.518788e-01	ci right 2.526652e-01	k: 1183155	n:4690000
KS ci ratio: 2.785764e-01	ci left: 3.634331e-05	ci right 4.829702e-05	k: 197	n:4690000
ZEB2   4690000 perm   10578 sec   (443 perm/sec)   p_kst 4.200426e-05   p_cons 2.522719e-01   p_joint 9.424307e-05

Joint ci ratio: 1.858170e-01	ci left: 8.588465e-05	ci right 1.036770e-04	k: 444	n:4700000
Cons ci ratio: 3.112971e-03	ci left: 2.518787e-01	ci right 2.526642e-01	k: 1185675	n:4700000
KS ci ratio: 2.785764e-01	ci left: 3.626598e-05	ci right 4.819426e-05	k: 197	n:4700000
ZEB2   4700000 perm   10620 sec   (443 perm/sec)   p_kst 4.191489e-05   p_cons 2.522713e-01   p_joint 9.446809e-05

Joint ci ratio: 1.856086e-01	ci left: 8.590475e-05	ci right 1.036791e-04	k: 445	n:4710000
Cons ci ratio: 3.109545e-03	ci left: 2.518936e-01	ci right 2.526783e-01	k: 1188266	n:4710000
KS ci ratio: 2.778755e-01	ci left: 3.638649e-05	ci right 4.831903e-05	k: 198	n:4710000
ZEB2   4710000 perm   10663 sec   (442 perm/sec)   p_kst 4.203822e-05   p_cons 2.522858e-01   p_joint 9.447983e-05

Joint ci ratio: 1.856086e-01	ci left: 8.572274e-05	ci right 1.034594e-04	k: 445	n:4720000
Cons ci ratio: 3.106181e-03	ci left: 2.519023e-01	ci right 2.526862e-01	k: 1190828	n:4720000
KS ci ratio: 2.778755e-01	ci left: 3.630939e-05	ci right 4.821666e-05	k: 198	n:4720000
ZEB2   4720000 perm   10705 sec   (441 perm/sec)   p_kst 4.194915e-05   p_cons 2.522941e-01   p_joint 9.427966e-05

Joint ci ratio: 1.854009e-01	ci left: 8.574311e-05	ci right 1.034619e-04	k: 446	n:4730000
Cons ci ratio: 3.102829e-03	ci left: 2.519107e-01	ci right 2.526938e-01	k: 1193389	n:4730000
KS ci ratio: 2.778756e-01	ci left: 3.623263e-05	ci right 4.811472e-05	k: 198	n:4730000
ZEB2   4730000 perm   10747 sec   (440 perm/sec)   p_kst 4.186047e-05   p_cons 2.523021e-01   p_joint 9.429175e-05

Joint ci ratio: 1.854009e-01	ci left: 8.556222e-05	ci right 1.032437e-04	k: 446	n:4740000
Cons ci ratio: 3.099594e-03	ci left: 2.519063e-01	ci right 2.526885e-01	k: 1195889	n:4740000
KS ci ratio: 2.778756e-01	ci left: 3.615619e-05	ci right 4.801321e-05	k: 198	n:4740000
ZEB2   4740000 perm   10790 sec   (439 perm/sec)   p_kst 4.177215e-05   p_cons 2.522973e-01   p_joint 9.409283e-05

Joint ci ratio: 1.849875e-01	ci left: 8.578362e-05	ci right 1.034668e-04	k: 448	n:4750000
Cons ci ratio: 3.096190e-03	ci left: 2.519238e-01	ci right 2.527052e-01	k: 1198493	n:4750000
KS ci ratio: 2.771800e-01	ci left: 3.627595e-05	ci right 4.813727e-05	k: 199	n:4750000
ZEB2   4750000 perm   10832 sec   (439 perm/sec)   p_kst 4.189474e-05   p_cons 2.523143e-01   p_joint 9.431579e-05

Joint ci ratio: 1.847818e-01	ci left: 8.580376e-05	ci right 1.034693e-04	k: 449	n:4760000
Cons ci ratio: 3.092872e-03	ci left: 2.519319e-01	ci right 2.527125e-01	k: 1201053	n:4760000
KS ci ratio: 2.764896e-01	ci left: 3.639524e-05	ci right 4.826077e-05	k: 200	n:4760000
ZEB2   4760000 perm   10874 sec   (438 perm/sec)   p_kst 4.201681e-05   p_cons 2.523221e-01   p_joint 9.432773e-05

Joint ci ratio: 1.847818e-01	ci left: 8.562388e-05	ci right 1.032524e-04	k: 449	n:4770000
Cons ci ratio: 3.089555e-03	ci left: 2.519413e-01	ci right 2.527211e-01	k: 1203619	n:4770000
KS ci ratio: 2.764896e-01	ci left: 3.631894e-05	ci right 4.815959e-05	k: 200	n:4770000
ZEB2   4770000 perm   10918 sec   (437 perm/sec)   p_kst 4.192872e-05   p_cons 2.523310e-01   p_joint 9.412998e-05

Joint ci ratio: 1.841689e-01	ci left: 8.604339e-05	ci right 1.036929e-04	k: 452	n:4780000
Cons ci ratio: 3.086394e-03	ci left: 2.519328e-01	ci right 2.527118e-01	k: 1206100	n:4780000
KS ci ratio: 2.758044e-01	ci left: 3.643768e-05	ci right 4.828250e-05	k: 201	n:4780000
ZEB2   4780000 perm   10961 sec   (436 perm/sec)   p_kst 4.205021e-05   p_cons 2.523222e-01   p_joint 9.456067e-05

Joint ci ratio: 1.849875e-01	ci left: 8.506726e-05	ci right 1.026028e-04	k: 448	n:4790000
Cons ci ratio: 3.083069e-03	ci left: 2.519457e-01	ci right 2.527239e-01	k: 1208683	n:4790000
KS ci ratio: 2.758044e-01	ci left: 3.636161e-05	ci right 4.818170e-05	k: 201	n:4790000
ZEB2   4790000 perm   11005 sec   (435 perm/sec)   p_kst 4.196242e-05   p_cons 2.523347e-01   p_joint 9.352818e-05

Joint ci ratio: 1.849876e-01	ci left: 8.489004e-05	ci right 1.023891e-04	k: 448	n:4800000
Cons ci ratio: 3.079848e-03	ci left: 2.519471e-01	ci right 2.527244e-01	k: 1211211	n:4800000
KS ci ratio: 2.758044e-01	ci left: 3.628586e-05	ci right 4.808132e-05	k: 201	n:4800000
ZEB2   4800000 perm   11048 sec   (434 perm/sec)   p_kst 4.187500e-05   p_cons 2.523356e-01   p_joint 9.333333e-05

Joint ci ratio: 1.847819e-01	ci left: 8.491183e-05	ci right 1.023937e-04	k: 449	n:4810000
Cons ci ratio: 3.076616e-03	ci left: 2.519510e-01	ci right 2.527275e-01	k: 1213751	n:4810000
KS ci ratio: 2.758044e-01	ci left: 3.621042e-05	ci right 4.798136e-05	k: 201	n:4810000
ZEB2   4810000 perm   11090 sec   (434 perm/sec)   p_kst 4.178794e-05   p_cons 2.523391e-01   p_joint 9.334719e-05

Joint ci ratio: 1.847819e-01	ci left: 8.473566e-05	ci right 1.021813e-04	k: 449	n:4820000
Cons ci ratio: 3.073410e-03	ci left: 2.519529e-01	ci right 2.527287e-01	k: 1216282	n:4820000
KS ci ratio: 2.758044e-01	ci left: 3.613529e-05	ci right 4.788181e-05	k: 201	n:4820000
ZEB2   4820000 perm   11134 sec   (433 perm/sec)   p_kst 4.170124e-05   p_cons 2.523407e-01   p_joint 9.315353e-05

Joint ci ratio: 1.845770e-01	ci left: 8.475770e-05	ci right 1.021863e-04	k: 450	n:4830000
Cons ci ratio: 3.070320e-03	ci left: 2.519419e-01	ci right 2.527168e-01	k: 1218750	n:4830000
KS ci ratio: 2.758044e-01	ci left: 3.606048e-05	ci right 4.778268e-05	k: 201	n:4830000
ZEB2   4830000 perm   11177 sec   (432 perm/sec)   p_kst 4.161491e-05   p_cons 2.523292e-01   p_joint 9.316770e-05

Joint ci ratio: 1.841690e-01	ci left: 8.497673e-05	ci right 1.024075e-04	k: 452	n:4840000
Cons ci ratio: 3.067097e-03	ci left: 2.519484e-01	ci right 2.527225e-01	k: 1221303	n:4840000
KS ci ratio: 2.758045e-01	ci left: 3.598597e-05	ci right 4.768395e-05	k: 201	n:4840000
ZEB2   4840000 perm   11220 sec   (431 perm/sec)   p_kst 4.152893e-05   p_cons 2.523353e-01   p_joint 9.338843e-05

Joint ci ratio: 1.839661e-01	ci left: 8.499820e-05	ci right 1.024120e-04	k: 453	n:4850000
Cons ci ratio: 3.063911e-03	ci left: 2.519516e-01	ci right 2.527250e-01	k: 1223840	n:4850000
KS ci ratio: 2.758045e-01	ci left: 3.591178e-05	ci right 4.758564e-05	k: 201	n:4850000
ZEB2   4850000 perm   11265 sec   (431 perm/sec)   p_kst 4.144330e-05   p_cons 2.523381e-01   p_joint 9.340206e-05

Joint ci ratio: 1.837638e-01	ci left: 8.501960e-05	ci right 1.024165e-04	k: 454	n:4860000
Cons ci ratio: 3.060743e-03	ci left: 2.519538e-01	ci right 2.527263e-01	k: 1226372	n:4860000
KS ci ratio: 2.758045e-01	ci left: 3.583788e-05	ci right 4.748772e-05	k: 201	n:4860000
ZEB2   4860000 perm   11308 sec   (430 perm/sec)   p_kst 4.135802e-05   p_cons 2.523399e-01   p_joint 9.341564e-05

Joint ci ratio: 1.835622e-01	ci left: 8.504092e-05	ci right 1.024210e-04	k: 455	n:4870000
Cons ci ratio: 3.057699e-03	ci left: 2.519418e-01	ci right 2.527135e-01	k: 1228835	n:4870000
KS ci ratio: 2.751243e-01	ci left: 3.595545e-05	ci right 4.760970e-05	k: 202	n:4870000
ZEB2   4870000 perm   11351 sec   (429 perm/sec)   p_kst 4.147844e-05   p_cons 2.523275e-01   p_joint 9.342916e-05

Joint ci ratio: 1.835622e-01	ci left: 8.486666e-05	ci right 1.022111e-04	k: 455	n:4880000
Cons ci ratio: 3.054734e-03	ci left: 2.519212e-01	ci right 2.526922e-01	k: 1231256	n:4880000
KS ci ratio: 2.751243e-01	ci left: 3.588177e-05	ci right 4.751214e-05	k: 202	n:4880000
ZEB2   4880000 perm   11395 sec   (428 perm/sec)   p_kst 4.139344e-05   p_cons 2.523066e-01   p_joint 9.323770e-05

Joint ci ratio: 1.835622e-01	ci left: 8.469311e-05	ci right 1.020021e-04	k: 455	n:4890000
Cons ci ratio: 3.051570e-03	ci left: 2.519265e-01	ci right 2.526967e-01	k: 1233803	n:4890000
KS ci ratio: 2.751243e-01	ci left: 3.580839e-05	ci right 4.741498e-05	k: 202	n:4890000
ZEB2   4890000 perm   11440 sec   (427 perm/sec)   p_kst 4.130879e-05   p_cons 2.523115e-01   p_joint 9.304703e-05

Joint ci ratio: 1.833613e-01	ci left: 8.471497e-05	ci right 1.020073e-04	k: 456	n:4900000
Cons ci ratio: 3.048392e-03	ci left: 2.519347e-01	ci right 2.527040e-01	k: 1236364	n:4900000
KS ci ratio: 2.751243e-01	ci left: 3.573531e-05	ci right 4.731821e-05	k: 202	n:4900000
ZEB2   4900000 perm   11483 sec   (427 perm/sec)   p_kst 4.122449e-05   p_cons 2.523192e-01   p_joint 9.306122e-05

Joint ci ratio: 1.833613e-01	ci left: 8.454244e-05	ci right 1.017996e-04	k: 456	n:4910000
Cons ci ratio: 3.045206e-03	ci left: 2.519450e-01	ci right 2.527136e-01	k: 1238936	n:4910000
KS ci ratio: 2.751243e-01	ci left: 3.566253e-05	ci right 4.722184e-05	k: 202	n:4910000
ZEB2   4910000 perm   11527 sec   (426 perm/sec)   p_kst 4.114053e-05   p_cons 2.523291e-01   p_joint 9.287169e-05

Joint ci ratio: 1.829614e-01	ci left: 8.475847e-05	ci right 1.020178e-04	k: 458	n:4920000
Cons ci ratio: 3.042143e-03	ci left: 2.519412e-01	ci right 2.527090e-01	k: 1241439	n:4920000
KS ci ratio: 2.751244e-01	ci left: 3.559005e-05	ci right 4.712586e-05	k: 202	n:4920000
ZEB2   4920000 perm   11570 sec   (425 perm/sec)   p_kst 4.105691e-05   p_cons 2.523250e-01   p_joint 9.308943e-05

Joint ci ratio: 1.827624e-01	ci left: 8.478010e-05	ci right 1.020230e-04	k: 459	n:4930000
Cons ci ratio: 3.038991e-03	ci left: 2.519497e-01	ci right 2.527167e-01	k: 1244002	n:4930000
KS ci ratio: 2.751244e-01	ci left: 3.551786e-05	ci right 4.703027e-05	k: 202	n:4930000
ZEB2   4930000 perm   11614 sec   (424 perm/sec)   p_kst 4.097363e-05   p_cons 2.523331e-01   p_joint 9.310345e-05

Joint ci ratio: 1.823664e-01	ci left: 8.499484e-05	ci right 1.022398e-04	k: 461	n:4940000
Cons ci ratio: 3.035984e-03	ci left: 2.519413e-01	ci right 2.527076e-01	k: 1246482	n:4940000
KS ci ratio: 2.744492e-01	ci left: 3.563444e-05	ci right 4.715141e-05	k: 203	n:4940000
ZEB2   4940000 perm   11658 sec   (424 perm/sec)   p_kst 4.109312e-05   p_cons 2.523243e-01   p_joint 9.331984e-05

Joint ci ratio: 1.819729e-01	ci left: 8.520875e-05	ci right 1.024557e-04	k: 463	n:4950000
Cons ci ratio: 3.032935e-03	ci left: 2.519392e-01	ci right 2.527047e-01	k: 1248993	n:4950000
KS ci ratio: 2.737790e-01	ci left: 3.575059e-05	ci right 4.727203e-05	k: 204	n:4950000
ZEB2   4950000 perm   11702 sec   (423 perm/sec)   p_kst 4.121212e-05   p_cons 2.523218e-01   p_joint 9.353535e-05

Joint ci ratio: 1.815819e-01	ci left: 8.542184e-05	ci right 1.026707e-04	k: 465	n:4960000
Cons ci ratio: 3.029917e-03	ci left: 2.519345e-01	ci right 2.526992e-01	k: 1251491	n:4960000
KS ci ratio: 2.724531e-01	ci left: 3.605413e-05	ci right 4.760749e-05	k: 206	n:4960000
ZEB2   4960000 perm   11747 sec   (422 perm/sec)   p_kst 4.153226e-05   p_cons 2.523167e-01   p_joint 9.375000e-05

Joint ci ratio: 1.815820e-01	ci left: 8.524996e-05	ci right 1.024641e-04	k: 465	n:4970000
Cons ci ratio: 3.026852e-03	ci left: 2.519369e-01	ci right 2.527008e-01	k: 1254024	n:4970000
KS ci ratio: 2.724531e-01	ci left: 3.598159e-05	ci right 4.751170e-05	k: 206	n:4970000
ZEB2   4970000 perm   11791 sec   (422 perm/sec)   p_kst 4.144869e-05   p_cons 2.523187e-01   p_joint 9.356137e-05

Joint ci ratio: 1.813874e-01	ci left: 8.527046e-05	ci right 1.024683e-04	k: 466	n:4980000
Cons ci ratio: 3.023775e-03	ci left: 2.519419e-01	ci right 2.527050e-01	k: 1256570	n:4980000
KS ci ratio: 2.724531e-01	ci left: 3.590933e-05	ci right 4.741629e-05	k: 206	n:4980000
ZEB2   4980000 perm   11836 sec   (421 perm/sec)   p_kst 4.136546e-05   p_cons 2.523233e-01   p_joint 9.357430e-05

Joint ci ratio: 1.877257e-01	ci left: 7.917405e-05	ci right 9.576392e-05	k: 435	n:4990000
Cons ci ratio: 3.020700e-03	ci left: 2.519476e-01	ci right 2.527100e-01	k: 1259120	n:4990000
KS ci ratio: 2.717974e-01	ci left: 3.602410e-05	ci right 4.753531e-05	k: 207	n:4990000
ZEB2   4990000 perm   11880 sec   (420 perm/sec)   p_kst 4.148297e-05   p_cons 2.523287e-01   p_joint 8.717435e-05

Joint ci ratio: 1.860267e-01	ci left: 8.054086e-05	ci right 9.724715e-05	k: 443	n:5000000
Cons ci ratio: 2.819697e-03	ci left: 2.783884e-01	ci right 2.791747e-01	k: 1393907	n:5000000
KS ci ratio: 2.717974e-01	ci left: 3.595205e-05	ci right 4.744024e-05	k: 207	n:5000000
ZEB2   5000000 perm   11924 sec   (419 perm/sec)   p_kst 4.140000e-05   p_cons 2.787814e-01   p_joint 8.860000e-05

Outputting figure to mutsig2_images.part000000000194/ZEB2.15_3681_5000000_4.14e-05_0.27878_8.86e-05.png
                gene_name: ZEB2
               theta_stop: 0.27 
                    nperm: 5000000 
                     p_ks: 4.14e-05 
        ci_ks_bounds_left: 3.60e-05 
       ci_ks_bounds_right: 4.74e-05 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.28 
                  p_joint: 8.86e-05 
     ci_joint_bounds_left: 8.05e-05 
    ci_joint_bounds_right: 9.72e-05 

Current progress: 5 percent done.
ZFHX3
Processing conservation and coverage...
89% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.946119e-02	ci left: 6.294971e-01	ci right 6.484219e-01	k: 6390	n:10000
Cons ci ratio: 1.655961e-02	ci left: 8.414233e-01	ci right 8.555730e-01	k: 8486	n:10000
KS ci ratio: 3.709500e-02	ci left: 5.176582e-01	ci right 5.373258e-01	k: 5275	n:10000
ZFHX3   10000 perm   4 sec   (2451 perm/sec)   p_kst 5.275000e-01   p_cons 8.486000e-01   p_joint 6.390000e-01

Outputting figure to mutsig2_images.part000000000194/ZFHX3.14_11148_10000_0.5275_0.8486_0.639.png
                gene_name: ZFHX3
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 7 percent done.
ZFYVE26
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.614875e-02	ci left: 2.512260e-01	ci right 2.685141e-01	k: 2598	n:10000
Cons ci ratio: 3.753630e-02	ci left: 5.117542e-01	ci right 5.314332e-01	k: 5216	n:10000
KS ci ratio: 8.265884e-02	ci left: 1.759564e-01	ci right 1.912283e-01	k: 1835	n:10000
ZFYVE26   10000 perm   3 sec   (2993 perm/sec)   p_kst 1.835000e-01   p_cons 5.216000e-01   p_joint 2.598000e-01

Outputting figure to mutsig2_images.part000000000194/ZFYVE26.13_7784_10000_0.1835_0.5216_0.2598.png
                gene_name: ZFYVE26
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 8 percent done.
ZFPM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.552184e-02	ci left: 8.576357e-01	ci right 8.711513e-01	k: 8645	n:10000
KS ci ratio: 8.780620e-03	ci left: 9.479391e-01	ci right 9.563950e-01	k: 9523	n:10000
ZFPM2   10000 perm   2 sec   (4370 perm/sec)   p_kst 9.523000e-01   p_cons 8.645000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000194/ZFPM2.11_3488_10000_0.9523_0.8645_1.png
                gene_name: ZFPM2
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 10 percent done.
ZEB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.669991e-02	ci left: 1.990953e-01	ci right 2.150757e-01	k: 2070	n:10000
Cons ci ratio: 7.406857e-02	ci left: 2.106310e-01	ci right 2.269331e-01	k: 2187	n:10000
KS ci ratio: 8.732659e-02	ci left: 1.603269e-01	ci right 1.750672e-01	k: 1676	n:10000
ZEB1   10000 perm   2 sec   (4307 perm/sec)   p_kst 1.676000e-01   p_cons 2.187000e-01   p_joint 2.070000e-01

Outputting figure to mutsig2_images.part000000000194/ZEB1.10_3425_10000_0.1676_0.2187_0.207.png
                gene_name: ZEB1
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 12 percent done.
ZFP37
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.202320e-02	ci left: 5.900191e-01	ci right 6.093228e-01	k: 5997	n:10000
Cons ci ratio: 3.185675e-02	ci left: 5.925284e-01	ci right 6.118120e-01	k: 6022	n:10000
KS ci ratio: 4.604759e-02	ci left: 4.104006e-01	ci right 4.298460e-01	k: 4201	n:10000
ZFP37   10000 perm   2 sec   (5292 perm/sec)   p_kst 4.201000e-01   p_cons 6.022000e-01   p_joint 5.997000e-01

Outputting figure to mutsig2_images.part000000000194/ZFP37.8_1909_10000_0.4201_0.6022_0.5997.png
                gene_name: ZFP37
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 14 percent done.
ZFP42
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.041773e-02	ci left: 9.290595e-01	ci right 9.388858e-01	k: 9341	n:10000
Cons ci ratio: 2.211284e-02	ci left: 7.500881e-01	ci right 7.669611e-01	k: 7586	n:10000
KS ci ratio: 2.222750e-02	ci left: 7.481663e-01	ci right 7.650840e-01	k: 7567	n:10000
ZFP42   10000 perm   2 sec   (5330 perm/sec)   p_kst 7.567000e-01   p_cons 7.586000e-01   p_joint 9.341000e-01

Outputting figure to mutsig2_images.part000000000194/ZFP42.8_937_10000_0.7567_0.7586_0.9341.png
                gene_name: ZFP42
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 15 percent done.
ZFP64
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.820259e-02	ci left: 1.928879e-01	ci right 2.086868e-01	k: 2007	n:10000
Cons ci ratio: 6.155970e-02	ci left: 2.795337e-01	ci right 2.973897e-01	k: 2884	n:10000
KS ci ratio: 9.850717e-02	ci left: 1.299255e-01	ci right 1.434869e-01	k: 1366	n:10000
ZFP64   10000 perm   2 sec   (4488 perm/sec)   p_kst 1.366000e-01   p_cons 2.884000e-01   p_joint 2.007000e-01

Outputting figure to mutsig2_images.part000000000194/ZFP64.8_3261_10000_0.1366_0.2884_0.2007.png
                gene_name: ZFP64
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 17 percent done.
ZFC3H1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.557042e-01	ci left: 5.494237e-02	ci right 6.431621e-02	k: 595	n:10000
Cons ci ratio: 2.002574e-01	ci left: 3.319542e-02	ci right 4.067746e-02	k: 368	n:10000
KS ci ratio: 1.475779e-01	ci left: 6.101761e-02	ci right 7.083710e-02	k: 658	n:10000
ZFC3H1   10000 perm   3 sec   (3693 perm/sec)   p_kst 6.580000e-02   p_cons 3.680000e-02   p_joint 5.950000e-02

Joint ci ratio: 1.241215e-01	ci left: 4.454455e-02	ci right 5.048789e-02	k: 949	n:20000
Cons ci ratio: 1.369529e-01	ci left: 3.664924e-02	ci right 4.208573e-02	k: 786	n:20000
KS ci ratio: 1.061339e-01	ci left: 6.045150e-02	ci right 6.727598e-02	k: 1276	n:20000
ZFC3H1   20000 perm   6 sec   (3338 perm/sec)   p_kst 6.380000e-02   p_cons 3.930000e-02   p_joint 4.745000e-02

Joint ci ratio: 1.296583e-01	ci left: 2.764661e-02	ci right 3.151188e-02	k: 886	n:30000
Cons ci ratio: 1.109208e-01	ci left: 3.774564e-02	ci right 4.221067e-02	k: 1198	n:30000
KS ci ratio: 8.664648e-02	ci left: 6.109278e-02	ci right 6.665872e-02	k: 1915	n:30000
ZFC3H1   30000 perm   9 sec   (3169 perm/sec)   p_kst 6.383333e-02   p_cons 3.993333e-02   p_joint 2.953333e-02

Joint ci ratio: 1.049121e-01	ci left: 3.195298e-02	ci right 3.551513e-02	k: 1348	n:40000
Cons ci ratio: 8.887877e-02	ci left: 4.431016e-02	ci right 4.845601e-02	k: 1854	n:40000
KS ci ratio: 7.555567e-02	ci left: 6.066285e-02	ci right 6.545082e-02	k: 2521	n:40000
ZFC3H1   40000 perm   13 sec   (3106 perm/sec)   p_kst 6.302500e-02   p_cons 4.635000e-02   p_joint 3.370000e-02

Joint ci ratio: 1.105260e-01	ci left: 2.318206e-02	ci right 2.591353e-02	k: 1226	n:50000
Cons ci ratio: 7.968967e-02	ci left: 4.431755e-02	ci right 4.801537e-02	k: 2307	n:50000
KS ci ratio: 6.736846e-02	ci left: 6.127947e-02	ci right 6.557138e-02	k: 3170	n:50000
ZFC3H1   50000 perm   16 sec   (3048 perm/sec)   p_kst 6.340000e-02   p_cons 4.614000e-02   p_joint 2.452000e-02

Joint ci ratio: 1.002144e-01	ci left: 2.361911e-02	ci right 2.612714e-02	k: 1491	n:60000
Cons ci ratio: 7.254898e-02	ci left: 4.471414e-02	ci right 4.809657e-02	k: 2783	n:60000
KS ci ratio: 6.139722e-02	ci left: 6.166013e-02	ci right 6.558221e-02	k: 3816	n:60000
ZFC3H1   60000 perm   20 sec   (2989 perm/sec)   p_kst 6.360000e-02   p_cons 4.638333e-02   p_joint 2.485000e-02

Joint ci ratio: 9.459839e-02	ci left: 2.280906e-02	ci right 2.508778e-02	k: 1675	n:70000
Cons ci ratio: 6.733058e-02	ci left: 4.462852e-02	ci right 4.775210e-02	k: 3232	n:70000
KS ci ratio: 5.677592e-02	ci left: 6.194410e-02	ci right 6.557788e-02	k: 4462	n:70000
ZFC3H1   70000 perm   24 sec   (2940 perm/sec)   p_kst 6.374286e-02   p_cons 4.617143e-02   p_joint 2.392857e-02

Outputting figure to mutsig2_images.part000000000194/ZFC3H1.7_6110_70000_0.063743_0.046171_0.023929.png
                gene_name: ZFC3H1
               theta_stop: 0.095 
                    nperm: 70000 
                     p_ks: 0.064 
        ci_ks_bounds_left: 0.062 
       ci_ks_bounds_right: 0.066 
                   p_cons: 0.046 
      ci_cons_bounds_left: 0.045 
     ci_cons_bounds_right: 0.048 
                  p_joint: 0.024 
     ci_joint_bounds_left: 0.023 
    ci_joint_bounds_right: 0.025 

Current progress: 19 percent done.
ZFP106
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.789127e-02	ci left: 5.070521e-01	ci right 5.267381e-01	k: 5169	n:10000
Cons ci ratio: 5.600744e-02	ci left: 3.194942e-01	ci right 3.380056e-01	k: 3287	n:10000
KS ci ratio: 4.161190e-02	ci left: 4.602776e-01	ci right 4.799398e-01	k: 4701	n:10000
ZFP106   10000 perm   3 sec   (3875 perm/sec)   p_kst 4.701000e-01   p_cons 3.287000e-01   p_joint 5.169000e-01

Outputting figure to mutsig2_images.part000000000194/ZFP106.7_5728_10000_0.4701_0.3287_0.5169.png
                gene_name: ZFP106
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 20 percent done.
ZIC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.922299e-02	ci left: 1.282615e-01	ci right 1.417519e-01	k: 1349	n:10000
Cons ci ratio: 2.621813e-02	ci left: 6.817379e-01	ci right 6.999508e-01	k: 6909	n:10000
KS ci ratio: 1.564030e-01	ci left: 5.446081e-02	ci right 6.379808e-02	k: 590	n:10000
ZIC4   10000 perm   2 sec   (5830 perm/sec)   p_kst 5.900000e-02   p_cons 6.909000e-01   p_joint 1.349000e-01

Joint ci ratio: 7.886285e-02	ci left: 1.055973e-01	ci right 1.143165e-01	k: 2198	n:20000
Cons ci ratio: 1.863294e-02	ci left: 6.822811e-01	ci right 6.951640e-01	k: 13775	n:20000
KS ci ratio: 1.139107e-01	ci left: 5.270727e-02	ci right 5.912260e-02	k: 1117	n:20000
ZIC4   20000 perm   4 sec   (5131 perm/sec)   p_kst 5.585000e-02   p_cons 6.887500e-01   p_joint 1.099000e-01

Joint ci ratio: 6.121010e-02	ci left: 1.165733e-01	ci right 1.239671e-01	k: 3607	n:30000
Cons ci ratio: 1.512230e-02	ci left: 6.860710e-01	ci right 6.965586e-01	k: 20740	n:30000
KS ci ratio: 9.242605e-02	ci left: 5.394633e-02	ci right 5.920663e-02	k: 1696	n:30000
ZIC4   30000 perm   6 sec   (4884 perm/sec)   p_kst 5.653333e-02   p_cons 6.913333e-01   p_joint 1.202333e-01

Outputting figure to mutsig2_images.part000000000194/ZIC4.7_1278_30000_0.056533_0.69133_0.12023.png
                gene_name: ZIC4
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.057 
        ci_ks_bounds_left: 0.054 
       ci_ks_bounds_right: 0.059 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 22 percent done.
ZIM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.420057e-01	ci left: 6.575174e-02	ci right 7.590000e-02	k: 707	n:10000
Cons ci ratio: 7.125468e-03	ci left: 9.644665e-01	ci right 9.714574e-01	k: 9681	n:10000
KS ci ratio: 3.556745e-01	ci left: 9.867770e-03	ci right 1.422343e-02	k: 119	n:10000
ZIM2   10000 perm   2 sec   (5258 perm/sec)   p_kst 1.190000e-02   p_cons 9.681000e-01   p_joint 7.070000e-02

Joint ci ratio: 1.119615e-01	ci left: 5.450789e-02	ci right 6.102142e-02	k: 1154	n:20000
Cons ci ratio: 5.127897e-03	ci left: 9.643786e-01	ci right 9.693845e-01	k: 19339	n:20000
KS ci ratio: 2.581180e-01	ci left: 9.928283e-03	ci right 1.291630e-02	k: 227	n:20000
ZIM2   20000 perm   4 sec   (4661 perm/sec)   p_kst 1.135000e-02   p_cons 9.669500e-01   p_joint 5.770000e-02

Joint ci ratio: 9.679586e-02	ci left: 4.931898e-02	ci right 5.436826e-02	k: 1554	n:30000
Cons ci ratio: 4.239138e-03	ci left: 9.640241e-01	ci right 9.681516e-01	k: 28984	n:30000
KS ci ratio: 2.086053e-01	ci left: 1.041914e-02	ci right 1.287680e-02	k: 348	n:30000
ZIM2   30000 perm   7 sec   (4428 perm/sec)   p_kst 1.160000e-02   p_cons 9.661333e-01   p_joint 5.180000e-02

Joint ci ratio: 9.811372e-02	ci left: 3.648912e-02	ci right 4.027827e-02	k: 1534	n:40000
Cons ci ratio: 3.650208e-03	ci left: 9.646899e-01	ci right 9.682419e-01	k: 38660	n:40000
KS ci ratio: 1.815153e-01	ci left: 1.047823e-02	ci right 1.259358e-02	k: 460	n:40000
ZIM2   40000 perm   9 sec   (4284 perm/sec)   p_kst 1.150000e-02   p_cons 9.665000e-01   p_joint 3.835000e-02

Joint ci ratio: 8.737176e-02	ci left: 3.700662e-02	ci right 4.040720e-02	k: 1934	n:50000
Cons ci ratio: 3.172818e-03	ci left: 9.667269e-01	ci right 9.698184e-01	k: 48415	n:50000
KS ci ratio: 1.618207e-01	ci left: 1.066069e-02	ci right 1.255665e-02	k: 579	n:50000
ZIM2   50000 perm   12 sec   (4181 perm/sec)   p_kst 1.158000e-02   p_cons 9.683000e-01   p_joint 3.868000e-02

Joint ci ratio: 7.697388e-02	ci left: 3.983623e-02	ci right 4.304165e-02	k: 2485	n:60000
Cons ci ratio: 2.887585e-03	ci left: 9.670542e-01	ci right 9.698669e-01	k: 58109	n:60000
KS ci ratio: 1.474006e-01	ci left: 1.079069e-02	ci right 1.252369e-02	k: 698	n:60000
ZIM2   60000 perm   15 sec   (4069 perm/sec)   p_kst 1.163333e-02   p_cons 9.684833e-01   p_joint 4.141667e-02

Joint ci ratio: 7.864943e-02	ci left: 3.292191e-02	ci right 3.563116e-02	k: 2398	n:70000
Cons ci ratio: 2.659403e-03	ci left: 9.674853e-01	ci right 9.700756e-01	k: 67816	n:70000
KS ci ratio: 1.372779e-01	ci left: 1.072332e-02	ci right 1.231756e-02	k: 805	n:70000
ZIM2   70000 perm   18 sec   (3991 perm/sec)   p_kst 1.150000e-02   p_cons 9.688000e-01   p_joint 3.425714e-02

Joint ci ratio: 6.265258e-02	ci left: 4.518655e-02	ci right 4.812144e-02	k: 3731	n:80000
Cons ci ratio: 2.494258e-03	ci left: 9.674063e-01	ci right 9.698345e-01	k: 77491	n:80000
KS ci ratio: 1.277918e-01	ci left: 1.088162e-02	ci right 1.237911e-02	k: 929	n:80000
ZIM2   80000 perm   20 sec   (3913 perm/sec)   p_kst 1.161250e-02   p_cons 9.686375e-01   p_joint 4.663750e-02

Joint ci ratio: 7.519456e-02	ci left: 2.820783e-02	ci right 3.042264e-02	k: 2637	n:90000
Cons ci ratio: 2.446775e-03	ci left: 9.649309e-01	ci right 9.673056e-01	k: 86952	n:90000
KS ci ratio: 1.203234e-01	ci left: 1.095378e-02	ci right 1.236684e-02	k: 1048	n:90000
ZIM2   90000 perm   23 sec   (3845 perm/sec)   p_kst 1.164444e-02   p_cons 9.661333e-01   p_joint 2.930000e-02

Joint ci ratio: 6.701879e-02	ci left: 3.197025e-02	ci right 3.419694e-02	k: 3307	n:100000
Cons ci ratio: 2.331563e-03	ci left: 9.646956e-01	ci right 9.669573e-01	k: 96584	n:100000
KS ci ratio: 1.147760e-01	ci left: 1.086781e-02	ci right 1.220075e-02	k: 1152	n:100000
ZIM2   100000 perm   26 sec   (3777 perm/sec)   p_kst 1.152000e-02   p_cons 9.658400e-01   p_joint 3.307000e-02

Joint ci ratio: 5.335137e-02	ci left: 4.553234e-02	ci right 4.803708e-02	k: 5145	n:110000
Cons ci ratio: 2.217945e-03	ci left: 9.649029e-01	ci right 9.670543e-01	k: 106259	n:110000
KS ci ratio: 1.064717e-01	ci left: 1.152420e-02	ci right 1.282898e-02	k: 1338	n:110000
ZIM2   110000 perm   30 sec   (3718 perm/sec)   p_kst 1.216364e-02   p_cons 9.659909e-01   p_joint 4.677273e-02

Joint ci ratio: 5.168081e-02	ci left: 4.456641e-02	ci right 4.693894e-02	k: 5489	n:120000
Cons ci ratio: 2.129661e-03	ci left: 9.647562e-01	ci right 9.668212e-01	k: 115896	n:120000
KS ci ratio: 1.017884e-01	ci left: 1.158653e-02	ci right 1.283721e-02	k: 1464	n:120000
ZIM2   120000 perm   33 sec   (3659 perm/sec)   p_kst 1.220000e-02   p_cons 9.658000e-01   p_joint 4.574167e-02

Joint ci ratio: 5.471419e-02	ci left: 3.694436e-02	ci right 3.903016e-02	k: 4937	n:130000
Cons ci ratio: 2.035113e-03	ci left: 9.651565e-01	ci right 9.671303e-01	k: 125600	n:130000
KS ci ratio: 1.014523e-01	ci left: 1.077749e-02	ci right 1.193677e-02	k: 1475	n:130000
ZIM2   130000 perm   36 sec   (3603 perm/sec)   p_kst 1.134615e-02   p_cons 9.661538e-01   p_joint 3.797692e-02

Joint ci ratio: 5.219488e-02	ci left: 3.771681e-02	ci right 3.974521e-02	k: 5421	n:140000
Cons ci ratio: 1.966319e-03	ci left: 9.650157e-01	ci right 9.669221e-01	k: 135237	n:140000
KS ci ratio: 9.774751e-02	ci left: 1.080168e-02	ci right 1.191869e-02	k: 1589	n:140000
ZIM2   140000 perm   40 sec   (3543 perm/sec)   p_kst 1.135000e-02   p_cons 9.659786e-01   p_joint 3.872143e-02

Outputting figure to mutsig2_images.part000000000194/ZIM2.7_1600_140000_0.01135_0.96598_0.038721.png
                gene_name: ZIM2
               theta_stop: 0.098 
                    nperm: 140000 
                     p_ks: 0.011 
        ci_ks_bounds_left: 0.011 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.039 
     ci_joint_bounds_left: 0.038 
    ci_joint_bounds_right: 0.040 

Current progress: 24 percent done.
ZFYVE9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.883207e-02	ci left: 6.394525e-01	ci right 6.582607e-01	k: 6489	n:10000
Cons ci ratio: 4.730797e-02	ci left: 3.973494e-01	ci right 4.167048e-01	k: 4070	n:10000
KS ci ratio: 3.342919e-02	ci left: 5.691511e-01	ci right 5.886029e-01	k: 5789	n:10000
ZFYVE9   10000 perm   2 sec   (4203 perm/sec)   p_kst 5.789000e-01   p_cons 4.070000e-01   p_joint 6.489000e-01

Outputting figure to mutsig2_images.part000000000194/ZFYVE9.6_4357_10000_0.5789_0.407_0.6489.png
                gene_name: ZFYVE9
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 25 percent done.
ZMYM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.751414e-01	ci left: 8.776964e-03	ci right 1.291541e-02	k: 107	n:10000
Cons ci ratio: 3.740117e-02	ci left: 5.135553e-01	ci right 5.332311e-01	k: 5234	n:10000
KS ci ratio: 1.481028e+00	ci left: 2.202202e-04	ci right 1.305486e-03	k: 6	n:10000
ZMYM2   10000 perm   2 sec   (5101 perm/sec)   p_kst 6.000000e-04   p_cons 5.234000e-01   p_joint 1.070000e-02

Joint ci ratio: 3.467290e-01	ci left: 5.250702e-03	ci right 7.496443e-03	k: 126	n:20000
Cons ci ratio: 2.551196e-02	ci left: 5.344136e-01	ci right 5.482743e-01	k: 10827	n:20000
KS ci ratio: 1.181570e+00	ci left: 2.397946e-04	ci right 9.193249e-04	k: 10	n:20000
ZMYM2   20000 perm   4 sec   (4463 perm/sec)   p_kst 5.000000e-04   p_cons 5.413500e-01   p_joint 6.300000e-03

Joint ci ratio: 4.376773e-01	ci left: 2.085372e-03	ci right 3.280854e-03	k: 79	n:30000
Cons ci ratio: 2.078828e-02	ci left: 5.367085e-01	ci right 5.480166e-01	k: 16271	n:30000
KS ci ratio: 8.762318e-01	ci left: 3.813497e-04	ci right 9.888526e-04	k: 19	n:30000
ZMYM2   30000 perm   7 sec   (4256 perm/sec)   p_kst 6.333333e-04   p_cons 5.423667e-01   p_joint 2.633333e-03

Joint ci ratio: 3.895570e-01	ci left: 2.034549e-03	ci right 3.039847e-03	k: 100	n:40000
Cons ci ratio: 1.802121e-02	ci left: 5.369769e-01	ci right 5.467670e-01	k: 21675	n:40000
KS ci ratio: 8.171313e-01	ci left: 3.447132e-04	ci right 8.325889e-04	k: 22	n:40000
ZMYM2   40000 perm   10 sec   (4122 perm/sec)   p_kst 5.500000e-04   p_cons 5.418750e-01   p_joint 2.500000e-03

Joint ci ratio: 4.463769e-01	ci left: 1.197768e-03	ci right 1.902143e-03	k: 76	n:50000
Cons ci ratio: 1.610887e-02	ci left: 5.378007e-01	ci right 5.465544e-01	k: 27109	n:50000
KS ci ratio: 7.405955e-01	ci left: 3.558926e-04	ci right 7.855751e-04	k: 27	n:50000
ZMYM2   50000 perm   12 sec   (4020 perm/sec)   p_kst 5.400000e-04   p_cons 5.421800e-01   p_joint 1.520000e-03

Joint ci ratio: 2.367069e-01	ci left: 4.011562e-03	ci right 5.103879e-03	k: 272	n:60000
Cons ci ratio: 1.470282e-02	ci left: 5.382699e-01	ci right 5.462593e-01	k: 32536	n:60000
KS ci ratio: 6.720784e-01	ci left: 3.786240e-04	ci right 7.723186e-04	k: 33	n:60000
ZMYM2   60000 perm   15 sec   (3940 perm/sec)   p_kst 5.500000e-04   p_cons 5.422667e-01   p_joint 4.533333e-03

Joint ci ratio: 2.247086e-01	ci left: 3.842257e-03	ci right 4.828097e-03	k: 302	n:70000
Cons ci ratio: 1.360816e-02	ci left: 5.387148e-01	ci right 5.461102e-01	k: 37969	n:70000
KS ci ratio: 6.275230e-01	ci left: 3.841858e-04	ci right 7.450385e-04	k: 38	n:70000
ZMYM2   70000 perm   18 sec   (3856 perm/sec)   p_kst 5.428571e-04   p_cons 5.424143e-01   p_joint 4.314286e-03

Joint ci ratio: 2.134026e-01	ci left: 3.751835e-03	ci right 4.659700e-03	k: 335	n:80000
Cons ci ratio: 1.274923e-02	ci left: 5.381771e-01	ci right 5.450949e-01	k: 43331	n:80000
KS ci ratio: 5.841911e-01	ci left: 3.996584e-04	ci right 7.382798e-04	k: 44	n:80000
ZMYM2   80000 perm   21 sec   (3785 perm/sec)   p_kst 5.500000e-04   p_cons 5.416375e-01   p_joint 4.187500e-03

Joint ci ratio: 2.091238e-01	ci left: 3.482238e-03	ci right 4.305802e-03	k: 349	n:90000
Cons ci ratio: 1.200435e-02	ci left: 5.390271e-01	ci right 5.455479e-01	k: 48806	n:90000
KS ci ratio: 5.434461e-01	ci left: 4.219488e-04	ci right 7.449956e-04	k: 51	n:90000
ZMYM2   90000 perm   24 sec   (3721 perm/sec)   p_kst 5.666667e-04   p_cons 5.422889e-01   p_joint 3.877778e-03

Joint ci ratio: 3.918020e-01	ci left: 8.046937e-04	ci right 1.205160e-03	k: 99	n:100000
Cons ci ratio: 1.136380e-02	ci left: 5.402665e-01	ci right 5.464510e-01	k: 54336	n:100000
KS ci ratio: 4.823570e-01	ci left: 5.016910e-04	ci right 8.284044e-04	k: 65	n:100000
ZMYM2   100000 perm   27 sec   (3659 perm/sec)   p_kst 6.500000e-04   p_cons 5.433600e-01   p_joint 9.900000e-04

Joint ci ratio: 2.318987e-01	ci left: 2.290571e-03	ci right 2.899763e-03	k: 284	n:110000
Cons ci ratio: 1.083429e-02	ci left: 5.404416e-01	ci right 5.463379e-01	k: 59773	n:110000
KS ci ratio: 4.683784e-01	ci left: 4.880874e-04	ci right 7.937877e-04	k: 69	n:110000
ZMYM2   110000 perm   31 sec   (3597 perm/sec)   p_kst 6.272727e-04   p_cons 5.433909e-01   p_joint 2.581818e-03

Joint ci ratio: 2.658651e-01	ci left: 1.568118e-03	ci right 2.056463e-03	k: 216	n:120000
Cons ci ratio: 1.035755e-02	ci left: 5.413102e-01	ci right 5.469543e-01	k: 65296	n:120000
KS ci ratio: 4.555483e-01	ci left: 4.768656e-04	ci right 7.648280e-04	k: 73	n:120000
ZMYM2   120000 perm   34 sec   (3542 perm/sec)   p_kst 6.083333e-04   p_cons 5.441333e-01   p_joint 1.800000e-03

Joint ci ratio: 2.588116e-01	ci left: 1.533728e-03	ci right 1.996643e-03	k: 228	n:130000
Cons ci ratio: 9.956825e-03	ci left: 5.411415e-01	ci right 5.465642e-01	k: 70701	n:130000
KS ci ratio: 4.381328e-01	ci left: 4.811443e-04	ci right 7.573092e-04	k: 79	n:130000
ZMYM2   130000 perm   37 sec   (3489 perm/sec)   p_kst 6.076923e-04   p_cons 5.438538e-01   p_joint 1.753846e-03

Joint ci ratio: 2.472054e-01	ci left: 1.571363e-03	ci right 2.021103e-03	k: 250	n:140000
Cons ci ratio: 9.597619e-03	ci left: 5.410865e-01	ci right 5.463117e-01	k: 76118	n:140000
KS ci ratio: 4.250531e-01	ci left: 4.786108e-04	ci right 7.427878e-04	k: 84	n:140000
ZMYM2   140000 perm   41 sec   (3436 perm/sec)   p_kst 6.000000e-04   p_cons 5.437000e-01   p_joint 1.785714e-03

Joint ci ratio: 2.419660e-01	ci left: 1.535441e-03	ci right 1.964187e-03	k: 261	n:150000
Cons ci ratio: 9.277919e-03	ci left: 5.408684e-01	ci right 5.459166e-01	k: 81509	n:150000
KS ci ratio: 4.085615e-01	ci left: 4.884774e-04	ci right 7.448008e-04	k: 91	n:150000
ZMYM2   150000 perm   44 sec   (3388 perm/sec)   p_kst 6.066667e-04   p_cons 5.433933e-01   p_joint 1.740000e-03

Joint ci ratio: 2.374821e-01	ci left: 1.498219e-03	ci right 1.907677e-03	k: 271	n:160000
Cons ci ratio: 8.967814e-03	ci left: 5.418057e-01	ci right 5.466926e-01	k: 87080	n:160000
KS ci ratio: 3.958573e-01	ci left: 4.916546e-04	ci right 7.395243e-04	k: 97	n:160000
ZMYM2   160000 perm   48 sec   (3341 perm/sec)   p_kst 6.062500e-04   p_cons 5.442500e-01   p_joint 1.693750e-03

Joint ci ratio: 2.406152e-01	ci left: 1.371367e-03	ci right 1.751839e-03	k: 264	n:170000
Cons ci ratio: 8.703931e-03	ci left: 5.416582e-01	ci right 5.463992e-01	k: 92485	n:170000
KS ci ratio: 3.824335e-01	ci left: 4.998826e-04	ci right 7.412073e-04	k: 104	n:170000
ZMYM2   170000 perm   52 sec   (3295 perm/sec)   p_kst 6.117647e-04   p_cons 5.440294e-01   p_joint 1.552941e-03

Joint ci ratio: 2.349237e-01	ci left: 1.363099e-03	ci right 1.731032e-03	k: 277	n:180000
Cons ci ratio: 8.456365e-03	ci left: 5.418624e-01	ci right 5.464695e-01	k: 97950	n:180000
KS ci ratio: 3.686458e-01	ci left: 5.123626e-04	ci right 7.486477e-04	k: 112	n:180000
ZMYM2   180000 perm   55 sec   (3252 perm/sec)   p_kst 6.222222e-04   p_cons 5.441667e-01   p_joint 1.538889e-03

Joint ci ratio: 2.304122e-01	ci left: 1.345876e-03	ci right 1.701191e-03	k: 288	n:190000
Cons ci ratio: 8.231581e-03	ci left: 5.418783e-01	ci right 5.463625e-01	k: 103383	n:190000
KS ci ratio: 3.607522e-01	ci left: 5.093005e-04	ci right 7.379624e-04	k: 117	n:190000
ZMYM2   190000 perm   59 sec   (3206 perm/sec)   p_kst 6.157895e-04   p_cons 5.441211e-01   p_joint 1.515789e-03

Joint ci ratio: 2.406435e-01	ci left: 1.165646e-03	ci right 1.489085e-03	k: 264	n:200000
Cons ci ratio: 8.026569e-03	ci left: 5.417240e-01	ci right 5.460947e-01	k: 108782	n:200000
KS ci ratio: 3.505050e-01	ci left: 5.157095e-04	ci right 7.391775e-04	k: 124	n:200000
ZMYM2   200000 perm   63 sec   (3161 perm/sec)   p_kst 6.200000e-04   p_cons 5.439100e-01   p_joint 1.320000e-03

Joint ci ratio: 2.358006e-01	ci left: 1.159394e-03	ci right 1.473679e-03	k: 275	n:210000
Cons ci ratio: 7.839532e-03	ci left: 5.413714e-01	ci right 5.456369e-01	k: 114136	n:210000
KS ci ratio: 3.450299e-01	ci left: 5.085356e-04	ci right 7.246841e-04	k: 128	n:210000
ZMYM2   210000 perm   67 sec   (3119 perm/sec)   p_kst 6.095238e-04   p_cons 5.435048e-01   p_joint 1.309524e-03

Joint ci ratio: 2.345349e-01	ci left: 1.119524e-03	ci right 1.421136e-03	k: 278	n:220000
Cons ci ratio: 7.661399e-03	ci left: 5.412839e-01	ci right 5.454513e-01	k: 119541	n:220000
KS ci ratio: 3.335871e-01	ci left: 5.228455e-04	ci right 7.361237e-04	k: 137	n:220000
ZMYM2   220000 perm   71 sec   (3078 perm/sec)   p_kst 6.227273e-04   p_cons 5.433682e-01   p_joint 1.263636e-03

Joint ci ratio: 2.273141e-01	ci left: 1.144585e-03	ci right 1.442124e-03	k: 296	n:230000
Cons ci ratio: 7.488974e-03	ci left: 5.415965e-01	ci right 5.456720e-01	k: 125036	n:230000
KS ci ratio: 3.265637e-01	ci left: 5.240387e-04	ci right 7.323592e-04	k: 143	n:230000
ZMYM2   230000 perm   76 sec   (3039 perm/sec)   p_kst 6.217391e-04   p_cons 5.436348e-01   p_joint 1.286957e-03

Joint ci ratio: 2.232189e-01	ci left: 1.140141e-03	ci right 1.430452e-03	k: 307	n:240000
Cons ci ratio: 7.337228e-03	ci left: 5.412379e-01	ci right 5.452278e-01	k: 130376	n:240000
KS ci ratio: 3.210385e-01	ci left: 5.213438e-04	ci right 7.243653e-04	k: 148	n:240000
ZMYM2   240000 perm   80 sec   (3001 perm/sec)   p_kst 6.166667e-04   p_cons 5.432333e-01   p_joint 1.279167e-03

Joint ci ratio: 2.443967e-01	ci left: 9.024459e-04	ci right 1.157350e-03	k: 256	n:250000
Cons ci ratio: 7.189065e-03	ci left: 5.412729e-01	ci right 5.451821e-01	k: 135807	n:250000
KS ci ratio: 3.098034e-01	ci left: 5.410092e-04	ci right 7.428601e-04	k: 159	n:250000
ZMYM2   250000 perm   84 sec   (2965 perm/sec)   p_kst 6.360000e-04   p_cons 5.432280e-01   p_joint 1.024000e-03

Joint ci ratio: 2.397764e-01	ci left: 9.038652e-04	ci right 1.153626e-03	k: 266	n:260000
Cons ci ratio: 7.048656e-03	ci left: 5.413675e-01	ci right 5.452007e-01	k: 141254	n:260000
KS ci ratio: 3.060034e-01	ci left: 5.343969e-04	ci right 7.308586e-04	k: 163	n:260000
ZMYM2   260000 perm   89 sec   (2930 perm/sec)   p_kst 6.269231e-04   p_cons 5.432846e-01   p_joint 1.023077e-03

Joint ci ratio: 1.627346e-01	ci left: 1.969918e-03	ci right 2.322386e-03	k: 578	n:270000
Cons ci ratio: 6.920553e-03	ci left: 5.411409e-01	ci right 5.449026e-01	k: 146616	n:270000
KS ci ratio: 3.005551e-01	ci left: 5.351360e-04	ci right 7.276977e-04	k: 169	n:270000
ZMYM2   270000 perm   93 sec   (2895 perm/sec)   p_kst 6.259259e-04   p_cons 5.430222e-01   p_joint 2.140741e-03

Joint ci ratio: 1.631650e-01	ci left: 1.889280e-03	ci right 2.228301e-03	k: 575	n:280000
Cons ci ratio: 6.797719e-03	ci left: 5.410383e-01	ci right 5.447322e-01	k: 152008	n:280000
KS ci ratio: 2.945516e-01	ci left: 5.391583e-04	ci right 7.285688e-04	k: 176	n:280000
ZMYM2   280000 perm   98 sec   (2858 perm/sec)   p_kst 6.285714e-04   p_cons 5.428857e-01   p_joint 2.053571e-03

Joint ci ratio: 1.619082e-01	ci left: 1.853902e-03	ci right 2.183763e-03	k: 584	n:290000
Cons ci ratio: 6.683057e-03	ci left: 5.408054e-01	ci right 5.444351e-01	k: 157360	n:290000
KS ci ratio: 2.896828e-01	ci left: 5.397405e-04	ci right 7.256471e-04	k: 182	n:290000
ZMYM2   290000 perm   103 sec   (2821 perm/sec)   p_kst 6.275862e-04   p_cons 5.426207e-01   p_joint 2.013793e-03

Joint ci ratio: 1.254006e-01	ci left: 3.043019e-03	ci right 3.453337e-03	k: 973	n:300000
Cons ci ratio: 6.572990e-03	ci left: 5.406652e-01	ci right 5.442340e-01	k: 162735	n:300000
KS ci ratio: 2.850477e-01	ci left: 5.403079e-04	ci right 7.228964e-04	k: 188	n:300000
ZMYM2   300000 perm   108 sec   (2786 perm/sec)   p_kst 6.266667e-04   p_cons 5.424500e-01   p_joint 3.243333e-03

Joint ci ratio: 1.292580e-01	ci left: 2.766816e-03	ci right 3.152246e-03	k: 916	n:310000
Cons ci ratio: 6.468480e-03	ci left: 5.405119e-01	ci right 5.440228e-01	k: 168103	n:310000
KS ci ratio: 2.813511e-01	ci left: 5.378622e-04	ci right 7.168488e-04	k: 193	n:310000
ZMYM2   310000 perm   113 sec   (2754 perm/sec)   p_kst 6.225806e-04   p_cons 5.422677e-01   p_joint 2.954839e-03

Joint ci ratio: 1.331807e-01	ci left: 2.520142e-03	ci right 2.882707e-03	k: 863	n:320000
Cons ci ratio: 6.365994e-03	ci left: 5.405875e-01	ci right 5.440430e-01	k: 173541	n:320000
KS ci ratio: 2.770988e-01	ci left: 5.384913e-04	ci right 7.145067e-04	k: 199	n:320000
ZMYM2   320000 perm   118 sec   (2721 perm/sec)   p_kst 6.218750e-04   p_cons 5.423156e-01   p_joint 2.696875e-03

Joint ci ratio: 1.359759e-01	ci left: 2.341269e-03	ci right 2.685741e-03	k: 828	n:330000
Cons ci ratio: 6.271714e-03	ci left: 5.403831e-01	ci right 5.437859e-01	k: 178888	n:330000
KS ci ratio: 2.723730e-01	ci left: 5.419246e-04	ci right 7.155245e-04	k: 206	n:330000
ZMYM2   330000 perm   123 sec   (2689 perm/sec)   p_kst 6.242424e-04   p_cons 5.420848e-01   p_joint 2.509091e-03

Joint ci ratio: 1.381701e-01	ci left: 2.198549e-03	ci right 2.527671e-03	k: 802	n:340000
Cons ci ratio: 6.177655e-03	ci left: 5.405000e-01	ci right 5.438522e-01	k: 184340	n:340000
KS ci ratio: 2.685094e-01	ci left: 5.424363e-04	ci right 7.133203e-04	k: 212	n:340000
ZMYM2   340000 perm   128 sec   (2660 perm/sec)   p_kst 6.235294e-04   p_cons 5.421765e-01   p_joint 2.358824e-03

Joint ci ratio: 1.386951e-01	ci left: 2.119178e-03	ci right 2.437724e-03	k: 796	n:350000
Cons ci ratio: 6.086548e-03	ci left: 5.407049e-01	ci right 5.440087e-01	k: 189825	n:350000
KS ci ratio: 2.660241e-01	ci left: 5.376008e-04	ci right 7.051325e-04	k: 216	n:350000
ZMYM2   350000 perm   133 sec   (2629 perm/sec)   p_kst 6.171429e-04   p_cons 5.423571e-01   p_joint 2.274286e-03

Joint ci ratio: 1.380931e-01	ci left: 2.079080e-03	ci right 2.390130e-03	k: 803	n:360000
Cons ci ratio: 6.003385e-03	ci left: 5.405652e-01	ci right 5.438230e-01	k: 195190	n:360000
KS ci ratio: 2.642052e-01	ci left: 5.304467e-04	ci right 6.944318e-04	k: 219	n:360000
ZMYM2   360000 perm   138 sec   (2600 perm/sec)   p_kst 6.083333e-04   p_cons 5.421944e-01   p_joint 2.230556e-03

Joint ci ratio: 1.361591e-01	ci left: 2.082919e-03	ci right 2.389825e-03	k: 826	n:370000
Cons ci ratio: 5.921701e-03	ci left: 5.405876e-01	ci right 5.438009e-01	k: 200612	n:370000
KS ci ratio: 2.600994e-01	ci left: 5.337862e-04	ci right 6.958225e-04	k: 226	n:370000
ZMYM2   370000 perm   144 sec   (2572 perm/sec)   p_kst 6.108108e-04   p_cons 5.421946e-01   p_joint 2.232432e-03

Joint ci ratio: 1.125124e-01	ci left: 3.005006e-03	ci right 3.365793e-03	k: 1209	n:380000
Cons ci ratio: 5.842304e-03	ci left: 5.406906e-01	ci right 5.438614e-01	k: 206065	n:380000
KS ci ratio: 2.556332e-01	ci left: 5.394315e-04	ci right 6.999214e-04	k: 234	n:380000
ZMYM2   380000 perm   149 sec   (2543 perm/sec)   p_kst 6.157895e-04   p_cons 5.422763e-01   p_joint 3.181579e-03

Joint ci ratio: 1.117781e-01	ci left: 2.967826e-03	ci right 3.321671e-03	k: 1225	n:390000
Cons ci ratio: 5.767088e-03	ci left: 5.406963e-01	ci right 5.438261e-01	k: 211482	n:390000
KS ci ratio: 2.524310e-01	ci left: 5.400051e-04	ci right 6.983367e-04	k: 240	n:390000
ZMYM2   390000 perm   155 sec   (2516 perm/sec)   p_kst 6.153846e-04   p_cons 5.422615e-01   p_joint 3.141026e-03

Joint ci ratio: 1.131326e-01	ci left: 2.823158e-03	ci right 3.164105e-03	k: 1196	n:400000
Cons ci ratio: 5.695536e-03	ci left: 5.406295e-01	ci right 5.437199e-01	k: 216870	n:400000
KS ci ratio: 2.488428e-01	ci left: 5.429060e-04	ci right 6.994751e-04	k: 247	n:400000
ZMYM2   400000 perm   161 sec   (2490 perm/sec)   p_kst 6.175000e-04   p_cons 5.421750e-01   p_joint 2.990000e-03

Joint ci ratio: 1.122005e-01	ci left: 2.801704e-03	ci right 3.137088e-03	k: 1216	n:410000
Cons ci ratio: 5.624151e-03	ci left: 5.407808e-01	ci right 5.438332e-01	k: 222346	n:410000
KS ci ratio: 2.483442e-01	ci left: 5.319511e-04	ci right 6.850060e-04	k: 248	n:410000
ZMYM2   410000 perm   166 sec   (2463 perm/sec)   p_kst 6.048780e-04   p_cons 5.423073e-01   p_joint 2.965854e-03

Joint ci ratio: 1.143444e-01	ci left: 2.630876e-03	ci right 2.952234e-03	k: 1171	n:420000
Cons ci ratio: 5.555996e-03	ci left: 5.408704e-01	ci right 5.438862e-01	k: 227799	n:420000
KS ci ratio: 2.444478e-01	ci left: 5.371574e-04	ci right 6.889174e-04	k: 256	n:420000
ZMYM2   420000 perm   172 sec   (2439 perm/sec)   p_kst 6.095238e-04   p_cons 5.423786e-01   p_joint 2.788095e-03

Joint ci ratio: 1.168750e-01	ci left: 2.456763e-03	ci right 2.763953e-03	k: 1121	n:430000
Cons ci ratio: 5.490364e-03	ci left: 5.409467e-01	ci right 5.439271e-01	k: 233248	n:430000
KS ci ratio: 2.402760e-01	ci left: 5.443249e-04	ci right 6.950945e-04	k: 265	n:430000
ZMYM2   430000 perm   178 sec   (2415 perm/sec)   p_kst 6.162791e-04   p_cons 5.424372e-01   p_joint 2.606977e-03

Joint ci ratio: 1.210606e-01	ci left: 2.233323e-03	ci right 2.523292e-03	k: 1045	n:440000
Cons ci ratio: 5.427127e-03	ci left: 5.410084e-01	ci right 5.439547e-01	k: 238692	n:440000
KS ci ratio: 2.389333e-01	ci left: 5.383625e-04	ci right 6.865239e-04	k: 268	n:440000
ZMYM2   440000 perm   184 sec   (2390 perm/sec)   p_kst 6.090909e-04   p_cons 5.424818e-01   p_joint 2.375000e-03

Joint ci ratio: 1.220027e-01	ci left: 2.149214e-03	ci right 2.430589e-03	k: 1029	n:450000
Cons ci ratio: 5.365090e-03	ci left: 5.411542e-01	ci right 5.440675e-01	k: 244175	n:450000
KS ci ratio: 2.376128e-01	ci left: 5.326674e-04	ci right 6.783320e-04	k: 271	n:450000
ZMYM2   450000 perm   190 sec   (2366 perm/sec)   p_kst 6.022222e-04   p_cons 5.426111e-01   p_joint 2.286667e-03

Joint ci ratio: 1.204338e-01	ci left: 2.159408e-03	ci right 2.438224e-03	k: 1056	n:460000
Cons ci ratio: 5.307409e-03	ci left: 5.410807e-01	ci right 5.439622e-01	k: 249560	n:460000
KS ci ratio: 2.363140e-01	ci left: 5.272221e-04	ci right 6.704942e-04	k: 274	n:460000
ZMYM2   460000 perm   196 sec   (2343 perm/sec)   p_kst 5.956522e-04   p_cons 5.425217e-01   p_joint 2.295652e-03

Joint ci ratio: 1.207809e-01	ci left: 2.101079e-03	ci right 2.373201e-03	k: 1050	n:470000
Cons ci ratio: 5.251797e-03	ci left: 5.409871e-01	ci right 5.438379e-01	k: 254934	n:470000
KS ci ratio: 2.333623e-01	ci left: 5.300221e-04	ci right 6.719965e-04	k: 281	n:470000
ZMYM2   470000 perm   203 sec   (2320 perm/sec)   p_kst 5.978723e-04   p_cons 5.424128e-01   p_joint 2.234043e-03

Joint ci ratio: 1.193692e-01	ci left: 2.107826e-03	ci right 2.377406e-03	k: 1075	n:480000
Cons ci ratio: 5.197547e-03	ci left: 5.409310e-01	ci right 5.437519e-01	k: 260324	n:480000
KS ci ratio: 2.321316e-01	ci left: 5.248653e-04	ci right 6.646106e-04	k: 284	n:480000
ZMYM2   480000 perm   209 sec   (2298 perm/sec)   p_kst 5.916667e-04   p_cons 5.423417e-01   p_joint 2.239583e-03

Joint ci ratio: 1.183294e-01	ci left: 2.102431e-03	ci right 2.368815e-03	k: 1094	n:490000
Cons ci ratio: 5.145220e-03	ci left: 5.408507e-01	ci right 5.436427e-01	k: 265701	n:490000
KS ci ratio: 2.301220e-01	ci left: 5.237670e-04	ci right 6.618411e-04	k: 289	n:490000
ZMYM2   490000 perm   215 sec   (2276 perm/sec)   p_kst 5.897959e-04   p_cons 5.422469e-01   p_joint 2.232653e-03

Joint ci ratio: 1.180085e-01	ci left: 2.072026e-03	ci right 2.333796e-03	k: 1100	n:500000
Cons ci ratio: 5.094482e-03	ci left: 5.407698e-01	ci right 5.435337e-01	k: 271076	n:500000
KS ci ratio: 2.281637e-01	ci left: 5.227177e-04	ci right 6.591773e-04	k: 294	n:500000
ZMYM2   500000 perm   222 sec   (2255 perm/sec)   p_kst 5.880000e-04   p_cons 5.421520e-01   p_joint 2.200000e-03

Joint ci ratio: 1.173190e-01	ci left: 2.056137e-03	ci right 2.314276e-03	k: 1113	n:510000
Cons ci ratio: 5.044778e-03	ci left: 5.407353e-01	ci right 5.434720e-01	k: 276473	n:510000
KS ci ratio: 2.270129e-01	ci left: 5.180152e-04	ci right 6.524697e-04	k: 297	n:510000
ZMYM2   510000 perm   228 sec   (2233 perm/sec)   p_kst 5.823529e-04   p_cons 5.421039e-01   p_joint 2.182353e-03

Joint ci ratio: 1.201088e-01	ci left: 1.921423e-03	ci right 2.168793e-03	k: 1062	n:520000
Cons ci ratio: 4.996287e-03	ci left: 5.407235e-01	ci right 5.434337e-01	k: 281881	n:520000
KS ci ratio: 2.251323e-01	ci left: 5.171242e-04	ci right 6.500812e-04	k: 302	n:520000
ZMYM2   520000 perm   235 sec   (2212 perm/sec)   p_kst 5.807692e-04   p_cons 5.420788e-01   p_joint 2.042308e-03

Joint ci ratio: 1.190497e-01	ci left: 1.919946e-03	ci right 2.164793e-03	k: 1081	n:530000
Cons ci ratio: 4.947740e-03	ci left: 5.408556e-01	ci right 5.435401e-01	k: 287365	n:530000
KS ci ratio: 2.232976e-01	ci left: 5.162712e-04	ci right 6.477785e-04	k: 307	n:530000
ZMYM2   530000 perm   242 sec   (2192 perm/sec)   p_kst 5.792453e-04   p_cons 5.421981e-01   p_joint 2.039623e-03

Joint ci ratio: 9.620998e-02	ci left: 2.917323e-03	ci right 3.213974e-03	k: 1654	n:540000
Cons ci ratio: 4.902298e-03	ci left: 5.408089e-01	ci right 5.434684e-01	k: 292755	n:540000
KS ci ratio: 2.218620e-01	ci left: 5.137050e-04	ci right 6.436024e-04	k: 311	n:540000
ZMYM2   540000 perm   249 sec   (2171 perm/sec)   p_kst 5.759259e-04   p_cons 5.421389e-01   p_joint 3.062963e-03

Joint ci ratio: 1.096115e-01	ci left: 2.192803e-03	ci right 2.448848e-03	k: 1275	n:550000
Cons ci ratio: 4.856236e-03	ci left: 5.409531e-01	ci right 5.435883e-01	k: 298249	n:550000
KS ci ratio: 2.201055e-01	ci left: 5.129527e-04	ci right 6.414939e-04	k: 316	n:550000
ZMYM2   550000 perm   256 sec   (2152 perm/sec)   p_kst 5.745455e-04   p_cons 5.422709e-01   p_joint 2.318182e-03

Joint ci ratio: 1.119231e-01	ci left: 2.063354e-03	ci right 2.309699e-03	k: 1223	n:560000
Cons ci ratio: 4.812071e-03	ci left: 5.410280e-01	ci right 5.436395e-01	k: 303707	n:560000
KS ci ratio: 2.183901e-01	ci left: 5.122310e-04	ci right 6.394568e-04	k: 321	n:560000
ZMYM2   560000 perm   263 sec   (2133 perm/sec)   p_kst 5.732143e-04   p_cons 5.423339e-01   p_joint 2.183929e-03

Joint ci ratio: 1.121551e-01	ci left: 2.018626e-03	ci right 2.260163e-03	k: 1218	n:570000
Cons ci ratio: 4.768212e-03	ci left: 5.411916e-01	ci right 5.437799e-01	k: 309217	n:570000
KS ci ratio: 2.160540e-01	ci left: 5.148572e-04	ci right 6.411859e-04	k: 328	n:570000
ZMYM2   570000 perm   270 sec   (2112 perm/sec)   p_kst 5.754386e-04   p_cons 5.424860e-01   p_joint 2.136842e-03

Joint ci ratio: 1.111565e-01	ci left: 2.020694e-03	ci right 2.260185e-03	k: 1240	n:580000
Cons ci ratio: 4.727271e-03	ci left: 5.411668e-01	ci right 5.437328e-01	k: 314621	n:580000
KS ci ratio: 2.147528e-01	ci left: 5.125048e-04	ci right 6.373991e-04	k: 332	n:580000
ZMYM2   580000 perm   277 sec   (2093 perm/sec)   p_kst 5.724138e-04   p_cons 5.424500e-01   p_joint 2.137931e-03

Joint ci ratio: 1.110688e-01	ci left: 1.989738e-03	ci right 2.225363e-03	k: 1242	n:590000
Cons ci ratio: 4.687174e-03	ci left: 5.411633e-01	ci right 5.437075e-01	k: 320037	n:590000
KS ci ratio: 2.131586e-01	ci left: 5.118388e-04	ci right 6.355238e-04	k: 337	n:590000
ZMYM2   590000 perm   284 sec   (2074 perm/sec)   p_kst 5.711864e-04   p_cons 5.424356e-01   p_joint 2.105085e-03

Joint ci ratio: 1.108921e-01	ci left: 1.963056e-03	ci right 2.195127e-03	k: 1246	n:600000
Cons ci ratio: 4.648393e-03	ci left: 5.411267e-01	ci right 5.436496e-01	k: 325433	n:600000
KS ci ratio: 2.106796e-01	ci left: 5.159340e-04	ci right 6.389715e-04	k: 345	n:600000
ZMYM2   600000 perm   292 sec   (2055 perm/sec)   p_kst 5.750000e-04   p_cons 5.423883e-01   p_joint 2.076667e-03

Joint ci ratio: 1.100135e-01	ci left: 1.962756e-03	ci right 2.192833e-03	k: 1266	n:610000
Cons ci ratio: 4.610650e-03	ci left: 5.410815e-01	ci right 5.435836e-01	k: 330823	n:610000
KS ci ratio: 2.082850e-01	ci left: 5.199029e-04	ci right 6.422981e-04	k: 353	n:610000
ZMYM2   610000 perm   299 sec   (2037 perm/sec)   p_kst 5.786885e-04   p_cons 5.423328e-01   p_joint 2.075410e-03

Joint ci ratio: 1.091979e-01	ci left: 1.960904e-03	ci right 2.188950e-03	k: 1285	n:620000
Cons ci ratio: 4.573084e-03	ci left: 5.411170e-01	ci right 5.435988e-01	k: 336262	n:620000
KS ci ratio: 2.065420e-01	ci left: 5.206922e-04	ci right 6.421178e-04	k: 359	n:620000
ZMYM2   620000 perm   307 sec   (2020 perm/sec)   p_kst 5.790323e-04   p_cons 5.423581e-01   p_joint 2.072581e-03

Joint ci ratio: 1.092849e-01	ci left: 1.926688e-03	ci right 2.150946e-03	k: 1283	n:630000
Cons ci ratio: 4.536580e-03	ci left: 5.411339e-01	ci right 5.435959e-01	k: 341690	n:630000
KS ci ratio: 2.051226e-01	ci left: 5.199547e-04	ci right 6.402705e-04	k: 364	n:630000
ZMYM2   630000 perm   315 sec   (2003 perm/sec)   p_kst 5.777778e-04   p_cons 5.423651e-01   p_joint 2.036508e-03

Joint ci ratio: 1.094148e-01	ci left: 1.892023e-03	ci right 2.112524e-03	k: 1280	n:640000
Cons ci ratio: 4.501291e-03	ci left: 5.411113e-01	ci right 5.435540e-01	k: 347093	n:640000
KS ci ratio: 2.037320e-01	ci left: 5.192430e-04	ci right 6.384782e-04	k: 369	n:640000
ZMYM2   640000 perm   322 sec   (1986 perm/sec)   p_kst 5.765625e-04   p_cons 5.423328e-01   p_joint 2.000000e-03

Joint ci ratio: 1.098903e-01	ci left: 1.846453e-03	ci right 2.062639e-03	k: 1269	n:650000
Cons ci ratio: 4.466910e-03	ci left: 5.410787e-01	ci right 5.435025e-01	k: 352489	n:650000
KS ci ratio: 2.015643e-01	ci left: 5.229379e-04	ci right 6.415867e-04	k: 377	n:650000
ZMYM2   650000 perm   330 sec   (1969 perm/sec)   p_kst 5.800000e-04   p_cons 5.422908e-01   p_joint 1.952308e-03

Joint ci ratio: 1.101529e-01	ci left: 1.809634e-03	ci right 2.022048e-03	k: 1263	n:660000
Cons ci ratio: 4.432791e-03	ci left: 5.411047e-01	ci right 5.435101e-01	k: 357923	n:660000
KS ci ratio: 1.999833e-01	ci left: 5.236485e-04	ci right 6.414130e-04	k: 383	n:660000
ZMYM2   660000 perm   338 sec   (1953 perm/sec)   p_kst 5.803030e-04   p_cons 5.423076e-01   p_joint 1.913636e-03

Joint ci ratio: 1.095913e-01	ci left: 1.801494e-03	ci right 2.011805e-03	k: 1276	n:670000
Cons ci ratio: 4.400302e-03	ci left: 5.410330e-01	ci right 5.434204e-01	k: 363292	n:670000
KS ci ratio: 1.992071e-01	ci left: 5.200866e-04	ci right 6.365409e-04	k: 386	n:670000
ZMYM2   670000 perm   346 sec   (1938 perm/sec)   p_kst 5.761194e-04   p_cons 5.422269e-01   p_joint 1.904478e-03

Joint ci ratio: 1.103749e-01	ci left: 1.749257e-03	ci right 1.955024e-03	k: 1258	n:680000
Cons ci ratio: 4.368089e-03	ci left: 5.410120e-01	ci right 5.433818e-01	k: 368694	n:680000
KS ci ratio: 1.984398e-01	ci left: 5.166304e-04	ci right 6.318112e-04	k: 389	n:680000
ZMYM2   680000 perm   354 sec   (1922 perm/sec)   p_kst 5.720588e-04   p_cons 5.421971e-01   p_joint 1.850000e-03

Joint ci ratio: 1.095084e-01	ci left: 1.752094e-03	ci right 1.956473e-03	k: 1278	n:690000
Cons ci ratio: 4.336612e-03	ci left: 5.409873e-01	ci right 5.433399e-01	k: 374093	n:690000
KS ci ratio: 1.971800e-01	ci left: 5.160304e-04	ci right 6.302594e-04	k: 394	n:690000
ZMYM2   690000 perm   362 sec   (1906 perm/sec)   p_kst 5.710145e-04   p_cons 5.421638e-01   p_joint 1.852174e-03

Joint ci ratio: 9.563750e-02	ci left: 2.279751e-03	ci right 2.510112e-03	k: 1675	n:700000
Cons ci ratio: 4.305260e-03	ci left: 5.410263e-01	ci right 5.433619e-01	k: 379536	n:700000
KS ci ratio: 1.954555e-01	ci left: 5.181671e-04	ci right 6.317465e-04	k: 401	n:700000
ZMYM2   700000 perm   370 sec   (1891 perm/sec)   p_kst 5.728571e-04   p_cons 5.421943e-01   p_joint 2.392857e-03

Joint ci ratio: 9.487613e-02	ci left: 2.284764e-03	ci right 2.513692e-03	k: 1702	n:710000
Cons ci ratio: 4.274942e-03	ci left: 5.410219e-01	ci right 5.433411e-01	k: 384949	n:710000
KS ci ratio: 1.940130e-01	ci left: 5.189077e-04	ci right 6.317108e-04	k: 407	n:710000
ZMYM2   710000 perm   379 sec   (1875 perm/sec)   p_kst 5.732394e-04   p_cons 5.421817e-01   p_joint 2.397183e-03

Joint ci ratio: 9.415994e-02	ci left: 2.288289e-03	ci right 2.515744e-03	k: 1728	n:720000
Cons ci ratio: 4.245197e-03	ci left: 5.410247e-01	ci right 5.433277e-01	k: 390367	n:720000
KS ci ratio: 1.919075e-01	ci left: 5.235969e-04	ci right 6.360400e-04	k: 416	n:720000
ZMYM2   720000 perm   387 sec   (1860 perm/sec)   p_kst 5.777778e-04   p_cons 5.421764e-01   p_joint 2.400000e-03

Joint ci ratio: 9.504723e-02	ci left: 2.214140e-03	ci right 2.436414e-03	k: 1696	n:730000
Cons ci ratio: 4.216727e-03	ci left: 5.409494e-01	ci right 5.432366e-01	k: 395728	n:730000
KS ci ratio: 1.896465e-01	ci left: 5.294689e-04	ci right 6.416791e-04	k: 426	n:730000
ZMYM2   730000 perm   396 sec   (1845 perm/sec)   p_kst 5.835616e-04   p_cons 5.420932e-01   p_joint 2.323288e-03

Joint ci ratio: 9.587331e-02	ci left: 2.145962e-03	ci right 2.363369e-03	k: 1667	n:740000
Cons ci ratio: 4.188480e-03	ci left: 5.409167e-01	ci right 5.431884e-01	k: 401119	n:740000
KS ci ratio: 1.874635e-01	ci left: 5.351897e-04	ci right 6.471582e-04	k: 436	n:740000
ZMYM2   740000 perm   404 sec   (1830 perm/sec)   p_kst 5.891892e-04   p_cons 5.420527e-01   p_joint 2.252703e-03

Joint ci ratio: 9.530381e-02	ci left: 2.143378e-03	ci right 2.359162e-03	k: 1687	n:750000
Cons ci ratio: 4.160860e-03	ci left: 5.408769e-01	ci right 5.431334e-01	k: 406504	n:750000
KS ci ratio: 1.864003e-01	ci left: 5.344086e-04	ci right 6.455077e-04	k: 441	n:750000
ZMYM2   750000 perm   413 sec   (1816 perm/sec)   p_kst 5.880000e-04   p_cons 5.420053e-01   p_joint 2.249333e-03

Joint ci ratio: 9.491157e-02	ci left: 2.133158e-03	ci right 2.346980e-03	k: 1701	n:760000
Cons ci ratio: 4.132290e-03	ci left: 5.410172e-01	ci right 5.432588e-01	k: 412025	n:760000
KS ci ratio: 1.855628e-01	ci left: 5.323949e-04	ci right 6.425222e-04	k: 445	n:760000
ZMYM2   760000 perm   422 sec   (1802 perm/sec)   p_kst 5.855263e-04   p_cons 5.421382e-01   p_joint 2.238158e-03

Joint ci ratio: 9.422194e-02	ci left: 2.137155e-03	ci right 2.349734e-03	k: 1726	n:770000
Cons ci ratio: 4.104868e-03	ci left: 5.410851e-01	ci right 5.433120e-01	k: 417493	n:770000
KS ci ratio: 1.845314e-01	ci left: 5.316734e-04	ci right 6.409717e-04	k: 450	n:770000
ZMYM2   770000 perm   431 sec   (1788 perm/sec)   p_kst 5.844156e-04   p_cons 5.421987e-01   p_joint 2.241558e-03

Joint ci ratio: 9.842472e-02	ci left: 1.929575e-03	ci right 2.130562e-03	k: 1582	n:780000
Cons ci ratio: 4.078807e-03	ci left: 5.410512e-01	ci right 5.432638e-01	k: 422883	n:780000
KS ci ratio: 1.831157e-01	ci left: 5.334185e-04	ci right 6.421410e-04	k: 457	n:780000
ZMYM2   780000 perm   439 sec   (1775 perm/sec)   p_kst 5.858974e-04   p_cons 5.421577e-01   p_joint 2.028205e-03

Joint ci ratio: 9.892821e-02	ci left: 1.885395e-03	ci right 2.082843e-03	k: 1566	n:790000
Cons ci ratio: 4.052761e-03	ci left: 5.410765e-01	ci right 5.432751e-01	k: 428319	n:790000
KS ci ratio: 1.823215e-01	ci left: 5.314981e-04	ci right 6.393073e-04	k: 461	n:790000
ZMYM2   790000 perm   448 sec   (1762 perm/sec)   p_kst 5.835443e-04   p_cons 5.421759e-01   p_joint 1.982278e-03

Joint ci ratio: 9.963267e-02	ci left: 1.835008e-03	ci right 2.028627e-03	k: 1544	n:800000
Cons ci ratio: 4.027156e-03	ci left: 5.411075e-01	ci right 5.432922e-01	k: 433760	n:800000
KS ci ratio: 1.817327e-01	ci left: 5.284334e-04	ci right 6.352367e-04	k: 464	n:800000
ZMYM2   800000 perm   457 sec   (1749 perm/sec)   p_kst 5.800000e-04   p_cons 5.422000e-01   p_joint 1.930000e-03

Joint ci ratio: 9.905739e-02	ci left: 1.834023e-03	ci right 2.026357e-03	k: 1562	n:810000
Cons ci ratio: 4.002001e-03	ci left: 5.411414e-01	ci right 5.433126e-01	k: 439204	n:810000
KS ci ratio: 1.811496e-01	ci left: 5.254449e-04	ci right 6.312661e-04	k: 467	n:810000
ZMYM2   810000 perm   467 sec   (1736 perm/sec)   p_kst 5.765432e-04   p_cons 5.422272e-01   p_joint 1.928395e-03

Joint ci ratio: 9.877405e-02	ci left: 1.822361e-03	ci right 2.012893e-03	k: 1571	n:820000
Cons ci ratio: 3.978152e-03	ci left: 5.410697e-01	ci right 5.432276e-01	k: 444562	n:820000
KS ci ratio: 1.807642e-01	ci left: 5.213655e-04	ci right 6.261173e-04	k: 469	n:820000
ZMYM2   820000 perm   476 sec   (1724 perm/sec)   p_kst 5.719512e-04   p_cons 5.421488e-01   p_joint 1.915854e-03

Joint ci ratio: 9.821343e-02	ci left: 1.821557e-03	ci right 2.010862e-03	k: 1589	n:830000
Cons ci ratio: 3.953774e-03	ci left: 5.411190e-01	ci right 5.432639e-01	k: 450019	n:830000
KS ci ratio: 1.798104e-01	ci left: 5.208362e-04	ci right 6.248694e-04	k: 474	n:830000
ZMYM2   830000 perm   485 sec   (1711 perm/sec)   p_kst 5.710843e-04   p_cons 5.421916e-01   p_joint 1.914458e-03

Joint ci ratio: 1.161747e-01	ci left: 1.274921e-03	ci right 1.433312e-03	k: 1136	n:840000
Cons ci ratio: 3.930856e-03	ci left: 5.410386e-01	ci right 5.431707e-01	k: 455368	n:840000
KS ci ratio: 1.698996e-01	ci left: 5.795270e-04	ci right 6.882502e-04	k: 531	n:840000
ZMYM2   840000 perm   495 sec   (1699 perm/sec)   p_kst 6.321429e-04   p_cons 5.421048e-01   p_joint 1.352381e-03

Joint ci ratio: 1.152656e-01	ci left: 1.280485e-03	ci right 1.438238e-03	k: 1154	n:850000
Cons ci ratio: 3.908110e-03	ci left: 5.409883e-01	ci right 5.431079e-01	k: 460741	n:850000
KS ci ratio: 1.680147e-01	ci left: 5.862299e-04	ci right 6.948670e-04	k: 543	n:850000
ZMYM2   850000 perm   504 sec   (1687 perm/sec)   p_kst 6.388235e-04   p_cons 5.420482e-01   p_joint 1.357647e-03

Joint ci ratio: 1.153665e-01	ci left: 1.263337e-03	ci right 1.419123e-03	k: 1152	n:860000
Cons ci ratio: 3.885236e-03	ci left: 5.410056e-01	ci right 5.431127e-01	k: 466171	n:860000
KS ci ratio: 1.677072e-01	ci left: 5.816411e-04	ci right 6.892105e-04	k: 545	n:860000
ZMYM2   860000 perm   513 sec   (1675 perm/sec)   p_kst 6.337209e-04   p_cons 5.420593e-01   p_joint 1.339535e-03

Joint ci ratio: 1.146232e-01	ci left: 1.265561e-03	ci right 1.420548e-03	k: 1167	n:870000
Cons ci ratio: 3.863402e-03	ci left: 5.409397e-01	ci right 5.430347e-01	k: 471529	n:870000
KS ci ratio: 1.663416e-01	ci left: 5.848680e-04	ci right 6.920653e-04	k: 554	n:870000
ZMYM2   870000 perm   523 sec   (1664 perm/sec)   p_kst 6.367816e-04   p_cons 5.419874e-01   p_joint 1.341379e-03

Joint ci ratio: 1.149696e-01	ci left: 1.243453e-03	ci right 1.396224e-03	k: 1160	n:880000
Cons ci ratio: 3.841370e-03	ci left: 5.409481e-01	ci right 5.430312e-01	k: 476951	n:880000
KS ci ratio: 1.654497e-01	ci left: 5.847569e-04	ci right 6.913019e-04	k: 560	n:880000
ZMYM2   880000 perm   533 sec   (1652 perm/sec)   p_kst 6.363636e-04   p_cons 5.419898e-01   p_joint 1.318182e-03

Joint ci ratio: 1.143313e-01	ci left: 1.243669e-03	ci right 1.395561e-03	k: 1173	n:890000
Cons ci ratio: 3.819598e-03	ci left: 5.409709e-01	ci right 5.430423e-01	k: 482386	n:890000
KS ci ratio: 1.648632e-01	ci left: 5.824952e-04	ci right 6.882145e-04	k: 564	n:890000
ZMYM2   890000 perm   542 sec   (1641 perm/sec)   p_kst 6.337079e-04   p_cons 5.420067e-01   p_joint 1.317978e-03

Joint ci ratio: 1.135599e-01	ci left: 1.247122e-03	ci right 1.398339e-03	k: 1189	n:900000
Cons ci ratio: 3.798030e-03	ci left: 5.410144e-01	ci right 5.430742e-01	k: 487840	n:900000
KS ci ratio: 1.639948e-01	ci left: 5.824153e-04	ci right 6.875084e-04	k: 570	n:900000
ZMYM2   900000 perm   552 sec   (1630 perm/sec)   p_kst 6.333333e-04   p_cons 5.420444e-01   p_joint 1.321111e-03

Joint ci ratio: 1.128977e-01	ci left: 1.248366e-03	ci right 1.398793e-03	k: 1203	n:910000
Cons ci ratio: 3.777133e-03	ci left: 5.410163e-01	ci right 5.430647e-01	k: 493257	n:910000
KS ci ratio: 1.634236e-01	ci left: 5.802306e-04	ci right 6.845290e-04	k: 574	n:910000
ZMYM2   910000 perm   562 sec   (1618 perm/sec)   p_kst 6.307692e-04   p_cons 5.420407e-01   p_joint 1.321978e-03

Joint ci ratio: 1.123393e-01	ci left: 1.247473e-03	ci right 1.396999e-03	k: 1215	n:920000
Cons ci ratio: 3.756215e-03	ci left: 5.410660e-01	ci right 5.431033e-01	k: 498718	n:920000
KS ci ratio: 1.625776e-01	ci left: 5.801795e-04	ci right 6.838760e-04	k: 580	n:920000
ZMYM2   920000 perm   572 sec   (1607 perm/sec)   p_kst 6.304348e-04   p_cons 5.420848e-01   p_joint 1.320652e-03

Joint ci ratio: 1.123401e-01	ci left: 1.234059e-03	ci right 1.381978e-03	k: 1215	n:930000
Cons ci ratio: 3.736054e-03	ci left: 5.410599e-01	ci right 5.430861e-01	k: 504128	n:930000
KS ci ratio: 1.622988e-01	ci left: 5.760040e-04	ci right 6.787605e-04	k: 582	n:930000
ZMYM2   930000 perm   582 sec   (1597 perm/sec)   p_kst 6.258065e-04   p_cons 5.420731e-01   p_joint 1.306452e-03

Joint ci ratio: 1.119269e-01	ci left: 1.230236e-03	ci right 1.377120e-03	k: 1224	n:940000
Cons ci ratio: 3.715975e-03	ci left: 5.410858e-01	ci right 5.431012e-01	k: 509568	n:940000
KS ci ratio: 1.616074e-01	ci left: 5.749798e-04	ci right 6.770743e-04	k: 587	n:940000
ZMYM2   940000 perm   593 sec   (1586 perm/sec)   p_kst 6.244681e-04   p_cons 5.420936e-01   p_joint 1.302128e-03

Joint ci ratio: 1.113828e-01	ci left: 1.229565e-03	ci right 1.375608e-03	k: 1236	n:950000
Cons ci ratio: 3.696521e-03	ci left: 5.410701e-01	ci right 5.430749e-01	k: 514969	n:950000
KS ci ratio: 1.607892e-01	ci left: 5.749884e-04	ci right 6.765175e-04	k: 593	n:950000
ZMYM2   950000 perm   603 sec   (1575 perm/sec)   p_kst 6.242105e-04   p_cons 5.420726e-01   p_joint 1.301053e-03

Joint ci ratio: 1.108909e-01	ci left: 1.227897e-03	ci right 1.373055e-03	k: 1247	n:960000
Cons ci ratio: 3.677509e-03	ci left: 5.410360e-01	ci right 5.430304e-01	k: 520352	n:960000
KS ci ratio: 1.603849e-01	ci left: 5.719983e-04	ci right 6.727210e-04	k: 596	n:960000
ZMYM2   960000 perm   614 sec   (1564 perm/sec)   p_kst 6.208333e-04   p_cons 5.420333e-01   p_joint 1.298958e-03

Joint ci ratio: 1.102741e-01	ci left: 1.229272e-03	ci right 1.373732e-03	k: 1261	n:970000
Cons ci ratio: 3.658871e-03	ci left: 5.409914e-01	ci right 5.429754e-01	k: 525724	n:970000
KS ci ratio: 1.591893e-01	ci left: 5.750089e-04	ci right 6.754347e-04	k: 605	n:970000
ZMYM2   970000 perm   625 sec   (1553 perm/sec)   p_kst 6.237113e-04   p_cons 5.419835e-01   p_joint 1.300000e-03

Joint ci ratio: 1.089853e-01	ci left: 1.246502e-03	ci right 1.391165e-03	k: 1291	n:980000
Cons ci ratio: 3.640461e-03	ci left: 5.409548e-01	ci right 5.429287e-01	k: 531103	n:980000
KS ci ratio: 1.664977e-01	ci left: 5.182402e-04	ci right 6.133235e-04	k: 553	n:980000
ZMYM2   980000 perm   635 sec   (1543 perm/sec)   p_kst 5.642857e-04   p_cons 5.419418e-01   p_joint 1.317347e-03

Joint ci ratio: 1.082337e-01	ci left: 1.251599e-03	ci right 1.395788e-03	k: 1309	n:990000
Cons ci ratio: 3.622061e-03	ci left: 5.409553e-01	ci right 5.429192e-01	k: 536518	n:990000
KS ci ratio: 1.651612e-01	ci left: 5.217191e-04	ci right 6.165961e-04	k: 562	n:990000
ZMYM2   990000 perm   646 sec   (1533 perm/sec)   p_kst 5.676768e-04   p_cons 5.419374e-01   p_joint 1.322222e-03

Joint ci ratio: 1.075786e-01	ci left: 1.254652e-03	ci right 1.398262e-03	k: 1325	n:1000000
Cons ci ratio: 3.604293e-03	ci left: 5.409068e-01	ci right 5.428609e-01	k: 541884	n:1000000
KS ci ratio: 1.641438e-01	ci left: 5.232135e-04	ci right 6.177183e-04	k: 569	n:1000000
ZMYM2   1000000 perm   657 sec   (1523 perm/sec)   p_kst 5.690000e-04   p_cons 5.418840e-01   p_joint 1.325000e-03

Joint ci ratio: 1.070551e-01	ci left: 1.254755e-03	ci right 1.397634e-03	k: 1338	n:1010000
Cons ci ratio: 3.586519e-03	ci left: 5.408960e-01	ci right 5.428404e-01	k: 547287	n:1010000
KS ci ratio: 1.632867e-01	ci left: 5.237304e-04	ci right 6.177860e-04	k: 575	n:1010000
ZMYM2   1010000 perm   668 sec   (1513 perm/sec)   p_kst 5.693069e-04   p_cons 5.418683e-01   p_joint 1.324752e-03

Joint ci ratio: 1.068961e-01	ci left: 1.246270e-03	ci right 1.387959e-03	k: 1342	n:1020000
Cons ci ratio: 3.568434e-03	ci left: 5.409648e-01	ci right 5.428996e-01	k: 552771	n:1020000
KS ci ratio: 1.627228e-01	ci left: 5.223574e-04	ci right 6.158107e-04	k: 579	n:1020000
ZMYM2   1020000 perm   679 sec   (1503 perm/sec)   p_kst 5.676471e-04   p_cons 5.419324e-01   p_joint 1.315686e-03

Joint ci ratio: 1.065794e-01	ci left: 1.241730e-03	ci right 1.382458e-03	k: 1350	n:1030000
Cons ci ratio: 3.551426e-03	ci left: 5.409197e-01	ci right 5.428451e-01	k: 558139	n:1030000
KS ci ratio: 1.620259e-01	ci left: 5.219430e-04	ci right 6.148835e-04	k: 584	n:1030000
ZMYM2   1030000 perm   690 sec   (1494 perm/sec)   p_kst 5.669903e-04   p_cons 5.418825e-01   p_joint 1.310680e-03

Joint ci ratio: 1.060314e-01	ci left: 1.242894e-03	ci right 1.382984e-03	k: 1364	n:1040000
Cons ci ratio: 3.534652e-03	ci left: 5.408764e-01	ci right 5.427926e-01	k: 563508	n:1040000
KS ci ratio: 1.613380e-01	ci left: 5.215375e-04	ci right 6.139732e-04	k: 589	n:1040000
ZMYM2   1040000 perm   701 sec   (1484 perm/sec)   p_kst 5.663462e-04   p_cons 5.418346e-01   p_joint 1.311538e-03

Joint ci ratio: 1.058381e-01	ci left: 1.235692e-03	ci right 1.374701e-03	k: 1369	n:1050000
Cons ci ratio: 3.518322e-03	ci left: 5.408045e-01	ci right 5.427115e-01	k: 568846	n:1050000
KS ci ratio: 1.606587e-01	ci left: 5.211405e-04	ci right 6.130794e-04	k: 594	n:1050000
ZMYM2   1050000 perm   712 sec   (1475 perm/sec)   p_kst 5.657143e-04   p_cons 5.417581e-01   p_joint 1.303810e-03

Joint ci ratio: 1.053777e-01	ci left: 1.235056e-03	ci right 1.373352e-03	k: 1381	n:1060000
Cons ci ratio: 3.501438e-03	ci left: 5.408443e-01	ci right 5.427423e-01	k: 574301	n:1060000
KS ci ratio: 1.601215e-01	ci left: 5.198462e-04	ci right 6.112206e-04	k: 598	n:1060000
ZMYM2   1060000 perm   723 sec   (1466 perm/sec)   p_kst 5.641509e-04   p_cons 5.417934e-01   p_joint 1.302830e-03

Joint ci ratio: 1.049609e-01	ci left: 1.233524e-03	ci right 1.371068e-03	k: 1392	n:1070000
Cons ci ratio: 3.485339e-03	ci left: 5.408058e-01	ci right 5.426949e-01	k: 579673	n:1070000
KS ci ratio: 1.595897e-01	ci left: 5.185766e-04	ci right 6.093960e-04	k: 602	n:1070000
ZMYM2   1070000 perm   734 sec   (1457 perm/sec)   p_kst 5.626168e-04   p_cons 5.417505e-01   p_joint 1.300935e-03

Joint ci ratio: 1.045117e-01	ci left: 1.232922e-03	ci right 1.369775e-03	k: 1404	n:1080000
Cons ci ratio: 3.468451e-03	ci left: 5.409125e-01	ci right 5.427928e-01	k: 585201	n:1080000
KS ci ratio: 1.591944e-01	ci left: 5.164419e-04	ci right 6.066420e-04	k: 605	n:1080000
ZMYM2   1080000 perm   746 sec   (1448 perm/sec)   p_kst 5.601852e-04   p_cons 5.418528e-01   p_joint 1.300000e-03

Joint ci ratio: 1.042896e-01	ci left: 1.226972e-03	ci right 1.362857e-03	k: 1410	n:1090000
Cons ci ratio: 3.452392e-03	ci left: 5.409329e-01	ci right 5.428045e-01	k: 590637	n:1090000
KS ci ratio: 1.578966e-01	ci left: 5.205143e-04	ci right 6.106144e-04	k: 615	n:1090000
ZMYM2   1090000 perm   757 sec   (1439 perm/sec)   p_kst 5.642202e-04   p_cons 5.418688e-01   p_joint 1.293578e-03

Joint ci ratio: 1.050383e-01	ci left: 1.198111e-03	ci right 1.331810e-03	k: 1390	n:1100000
Cons ci ratio: 3.436360e-03	ci left: 5.409811e-01	ci right 5.428442e-01	k: 596104	n:1100000
KS ci ratio: 1.577689e-01	ci left: 5.166555e-04	ci right 6.060084e-04	k: 616	n:1100000
ZMYM2   1100000 perm   769 sec   (1430 perm/sec)   p_kst 5.600000e-04   p_cons 5.419127e-01   p_joint 1.263636e-03

Joint ci ratio: 1.058032e-01	ci left: 1.169773e-03	ci right 1.301320e-03	k: 1370	n:1110000
Cons ci ratio: 3.420853e-03	ci left: 5.409843e-01	ci right 5.428389e-01	k: 601522	n:1110000
KS ci ratio: 1.567558e-01	ci left: 5.189245e-04	ci right 6.080394e-04	k: 624	n:1110000
ZMYM2   1110000 perm   781 sec   (1422 perm/sec)   p_kst 5.621622e-04   p_cons 5.419117e-01   p_joint 1.234234e-03

Joint ci ratio: 1.055727e-01	ci left: 1.164544e-03	ci right 1.295200e-03	k: 1376	n:1120000
Cons ci ratio: 3.404917e-03	ci left: 5.410803e-01	ci right 5.429266e-01	k: 607044	n:1120000
KS ci ratio: 1.565058e-01	ci left: 5.160069e-04	ci right 6.044662e-04	k: 626	n:1120000
ZMYM2   1120000 perm   792 sec   (1413 perm/sec)   p_kst 5.589286e-04   p_cons 5.420036e-01   p_joint 1.228571e-03

Joint ci ratio: 1.050779e-01	ci left: 1.165440e-03	ci right 1.295546e-03	k: 1389	n:1130000
Cons ci ratio: 3.390156e-03	ci left: 5.410348e-01	ci right 5.428730e-01	k: 612408	n:1130000
KS ci ratio: 1.561329e-01	ci left: 5.139915e-04	ci right 6.018757e-04	k: 629	n:1130000
ZMYM2   1130000 perm   804 sec   (1405 perm/sec)   p_kst 5.566372e-04   p_cons 5.419540e-01   p_joint 1.229204e-03

Joint ci ratio: 1.059598e-01	ci left: 1.135572e-03	ci right 1.263475e-03	k: 1366	n:1140000
Cons ci ratio: 3.375245e-03	ci left: 5.410401e-01	ci right 5.428702e-01	k: 617829	n:1140000
KS ci ratio: 1.555171e-01	ci left: 5.136977e-04	ci right 6.011529e-04	k: 634	n:1140000
ZMYM2   1140000 perm   816 sec   (1397 perm/sec)   p_kst 5.561404e-04   p_cons 5.419553e-01   p_joint 1.198246e-03

Joint ci ratio: 1.056128e-01	ci left: 1.133317e-03	ci right 1.260521e-03	k: 1375	n:1150000
Cons ci ratio: 3.360883e-03	ci left: 5.409932e-01	ci right 5.428153e-01	k: 623190	n:1150000
KS ci ratio: 1.549084e-01	ci left: 5.134098e-04	ci right 6.004421e-04	k: 639	n:1150000
ZMYM2   1150000 perm   828 sec   (1388 perm/sec)   p_kst 5.556522e-04   p_cons 5.419043e-01   p_joint 1.195652e-03

Joint ci ratio: 1.061554e-01	ci left: 1.111797e-03	ci right 1.237267e-03	k: 1361	n:1160000
Cons ci ratio: 3.346029e-03	ci left: 5.410471e-01	ci right 5.428613e-01	k: 628667	n:1160000
KS ci ratio: 1.537119e-01	ci left: 5.172717e-04	ci right 6.042190e-04	k: 649	n:1160000
ZMYM2   1160000 perm   840 sec   (1380 perm/sec)   p_kst 5.594828e-04   p_cons 5.419543e-01   p_joint 1.173276e-03

Joint ci ratio: 1.069849e-01	ci left: 1.084823e-03	ci right 1.208266e-03	k: 1340	n:1170000
Cons ci ratio: 3.331518e-03	ci left: 5.410779e-01	ci right 5.428843e-01	k: 634118	n:1170000
KS ci ratio: 1.531241e-01	ci left: 5.169600e-04	ci right 6.034922e-04	k: 654	n:1170000
ZMYM2   1170000 perm   853 sec   (1372 perm/sec)   p_kst 5.589744e-04   p_cons 5.419812e-01   p_joint 1.145299e-03

Joint ci ratio: 1.066674e-01	ci left: 1.082228e-03	ci right 1.204987e-03	k: 1348	n:1180000
Cons ci ratio: 3.317586e-03	ci left: 5.410497e-01	ci right 5.428484e-01	k: 639500	n:1180000
KS ci ratio: 1.525431e-01	ci left: 5.166542e-04	ci right 6.027771e-04	k: 659	n:1180000
ZMYM2   1180000 perm   865 sec   (1364 perm/sec)   p_kst 5.584746e-04   p_cons 5.419492e-01   p_joint 1.142373e-03

Joint ci ratio: 1.062351e-01	ci left: 1.082132e-03	ci right 1.204351e-03	k: 1359	n:1190000
Cons ci ratio: 3.303950e-03	ci left: 5.410035e-01	ci right 5.427947e-01	k: 644860	n:1190000
KS ci ratio: 1.521977e-01	ci left: 5.147375e-04	ci right 6.003289e-04	k: 662	n:1190000
ZMYM2   1190000 perm   877 sec   (1356 perm/sec)   p_kst 5.563025e-04   p_cons 5.418992e-01   p_joint 1.142017e-03

Joint ci ratio: 1.058081e-01	ci left: 1.082037e-03	ci right 1.203724e-03	k: 1370	n:1200000
Cons ci ratio: 3.290392e-03	ci left: 5.409714e-01	ci right 5.427551e-01	k: 650236	n:1200000
KS ci ratio: 1.517408e-01	ci left: 5.136545e-04	ci right 5.987861e-04	k: 666	n:1200000
ZMYM2   1200000 perm   890 sec   (1348 perm/sec)   p_kst 5.550000e-04   p_cons 5.418633e-01   p_joint 1.141667e-03

Joint ci ratio: 1.054626e-01	ci left: 1.080336e-03	ci right 1.201411e-03	k: 1379	n:1210000
Cons ci ratio: 3.276825e-03	ci left: 5.409663e-01	ci right 5.427426e-01	k: 655644	n:1210000
KS ci ratio: 1.510628e-01	ci left: 5.141803e-04	ci right 5.989839e-04	k: 672	n:1210000
ZMYM2   1210000 perm   903 sec   (1340 perm/sec)   p_kst 5.553719e-04   p_cons 5.418545e-01   p_joint 1.139669e-03

Joint ci ratio: 1.051584e-01	ci left: 1.077866e-03	ci right 1.198293e-03	k: 1387	n:1220000
Cons ci ratio: 3.263214e-03	ci left: 5.409932e-01	ci right 5.427623e-01	k: 661091	n:1220000
KS ci ratio: 1.508391e-01	ci left: 5.115431e-04	ci right 5.957754e-04	k: 674	n:1220000
ZMYM2   1220000 perm   915 sec   (1333 perm/sec)   p_kst 5.524590e-04   p_cons 5.418779e-01   p_joint 1.136885e-03

Joint ci ratio: 1.045946e-01	ci left: 1.080978e-03	ci right 1.201066e-03	k: 1402	n:1230000
Cons ci ratio: 3.249910e-03	ci left: 5.409987e-01	ci right 5.427605e-01	k: 666512	n:1230000
KS ci ratio: 1.498432e-01	ci left: 5.144261e-04	ci right 5.985238e-04	k: 683	n:1230000
ZMYM2   1230000 perm   928 sec   (1325 perm/sec)   p_kst 5.552846e-04   p_cons 5.418797e-01   p_joint 1.139837e-03

Joint ci ratio: 1.042978e-01	ci left: 1.078543e-03	ci right 1.198000e-03	k: 1410	n:1240000
Cons ci ratio: 3.236868e-03	ci left: 5.409887e-01	ci right 5.427434e-01	k: 671914	n:1240000
KS ci ratio: 1.495158e-01	ci left: 5.126062e-04	ci right 5.962069e-04	k: 686	n:1240000
ZMYM2   1240000 perm   941 sec   (1318 perm/sec)   p_kst 5.532258e-04   p_cons 5.418661e-01   p_joint 1.137097e-03

Joint ci ratio: 1.044466e-01	ci left: 1.066798e-03	ci right 1.185133e-03	k: 1406	n:1250000
Cons ci ratio: 3.223223e-03	ci left: 5.410957e-01	ci right 5.428433e-01	k: 677462	n:1250000
KS ci ratio: 1.489747e-01	ci left: 5.123560e-04	ci right 5.955866e-04	k: 691	n:1250000
ZMYM2   1250000 perm   954 sec   (1310 perm/sec)   p_kst 5.528000e-04   p_cons 5.419696e-01   p_joint 1.124800e-03

Joint ci ratio: 1.038941e-01	ci left: 1.069926e-03	ci right 1.187942e-03	k: 1421	n:1260000
Cons ci ratio: 3.210656e-03	ci left: 5.410605e-01	ci right 5.428012e-01	k: 682833	n:1260000
KS ci ratio: 1.481209e-01	ci left: 5.144029e-04	ci right 5.974446e-04	k: 699	n:1260000
ZMYM2   1260000 perm   967 sec   (1303 perm/sec)   p_kst 5.547619e-04   p_cons 5.419310e-01   p_joint 1.127778e-03

Joint ci ratio: 1.034224e-01	ci left: 1.071473e-03	ci right 1.189089e-03	k: 1434	n:1270000
Cons ci ratio: 3.197962e-03	ci left: 5.410684e-01	ci right 5.428023e-01	k: 688258	n:1270000
KS ci ratio: 1.473857e-01	ci left: 5.156606e-04	ci right 5.984558e-04	k: 706	n:1270000
ZMYM2   1270000 perm   980 sec   (1296 perm/sec)   p_kst 5.559055e-04   p_cons 5.419354e-01   p_joint 1.129134e-03

Joint ci ratio: 1.029570e-01	ci left: 1.072996e-03	ci right 1.190218e-03	k: 1447	n:1280000
Cons ci ratio: 3.185102e-03	ci left: 5.411254e-01	ci right 5.428525e-01	k: 693746	n:1280000
KS ci ratio: 1.467642e-01	ci left: 5.161470e-04	ci right 5.986402e-04	k: 712	n:1280000
ZMYM2   1280000 perm   993 sec   (1289 perm/sec)   p_kst 5.562500e-04   p_cons 5.419891e-01   p_joint 1.130469e-03

Joint ci ratio: 1.027446e-01	ci left: 1.069209e-03	ci right 1.185762e-03	k: 1453	n:1290000
Cons ci ratio: 3.172474e-03	ci left: 5.411692e-01	ci right 5.428895e-01	k: 699218	n:1290000
KS ci ratio: 1.463543e-01	ci left: 5.151329e-04	ci right 5.972140e-04	k: 716	n:1290000
ZMYM2   1290000 perm   1006 sec   (1282 perm/sec)   p_kst 5.550388e-04   p_cons 5.420295e-01   p_joint 1.126357e-03

Joint ci ratio: 1.033157e-01	ci left: 1.048994e-03	ci right 1.164017e-03	k: 1437	n:1300000
Cons ci ratio: 3.160255e-03	ci left: 5.411715e-01	ci right 5.428852e-01	k: 704637	n:1300000
KS ci ratio: 1.456450e-01	ci left: 5.163583e-04	ci right 5.982012e-04	k: 723	n:1300000
ZMYM2   1300000 perm   1019 sec   (1275 perm/sec)   p_kst 5.561538e-04   p_cons 5.420285e-01   p_joint 1.105385e-03

Joint ci ratio: 1.030653e-01	ci left: 1.046192e-03	ci right 1.160613e-03	k: 1444	n:1310000
Cons ci ratio: 3.148273e-03	ci left: 5.411586e-01	ci right 5.428657e-01	k: 710036	n:1310000
KS ci ratio: 1.449459e-01	ci left: 5.175659e-04	ci right 5.991724e-04	k: 730	n:1310000
ZMYM2   1310000 perm   1033 sec   (1269 perm/sec)   p_kst 5.572519e-04   p_cons 5.420122e-01   p_joint 1.102290e-03

Joint ci ratio: 1.027813e-01	ci left: 1.044170e-03	ci right 1.158037e-03	k: 1452	n:1320000
Cons ci ratio: 3.136350e-03	ci left: 5.411579e-01	ci right 5.428586e-01	k: 715451	n:1320000
KS ci ratio: 1.446496e-01	ci left: 5.158353e-04	ci right 5.969882e-04	k: 733	n:1320000
ZMYM2   1320000 perm   1046 sec   (1262 perm/sec)   p_kst 5.553030e-04   p_cons 5.420083e-01   p_joint 1.100000e-03

Joint ci ratio: 1.035334e-01	ci left: 1.020937e-03	ci right 1.133134e-03	k: 1431	n:1330000
Cons ci ratio: 3.124400e-03	ci left: 5.411829e-01	ci right 5.428771e-01	k: 720900	n:1330000
KS ci ratio: 1.440619e-01	ci left: 5.163052e-04	ci right 5.971737e-04	k: 739	n:1330000
ZMYM2   1330000 perm   1059 sec   (1256 perm/sec)   p_kst 5.556391e-04   p_cons 5.420301e-01   p_joint 1.075940e-03

Joint ci ratio: 1.036063e-01	ci left: 1.011864e-03	ci right 1.123147e-03	k: 1429	n:1340000
Cons ci ratio: 3.112988e-03	ci left: 5.411433e-01	ci right 5.428312e-01	k: 726263	n:1340000
KS ci ratio: 1.437709e-01	ci left: 5.146103e-04	ci right 5.950366e-04	k: 742	n:1340000
ZMYM2   1340000 perm   1073 sec   (1249 perm/sec)   p_kst 5.537313e-04   p_cons 5.419873e-01   p_joint 1.066418e-03

Joint ci ratio: 1.045999e-01	ci left: 9.848884e-04	ci right 1.094307e-03	k: 1402	n:1350000
Cons ci ratio: 3.101769e-03	ci left: 5.410932e-01	ci right 5.427748e-01	k: 731611	n:1350000
KS ci ratio: 1.430983e-01	ci left: 5.157975e-04	ci right 5.960000e-04	k: 749	n:1350000
ZMYM2   1350000 perm   1086 sec   (1243 perm/sec)   p_kst 5.548148e-04   p_cons 5.419341e-01   p_joint 1.038519e-03

Joint ci ratio: 1.043771e-01	ci left: 9.819430e-04	ci right 1.090788e-03	k: 1408	n:1360000
Cons ci ratio: 3.090342e-03	ci left: 5.410967e-01	ci right 5.427722e-01	k: 737031	n:1360000
KS ci ratio: 1.428131e-01	ci left: 5.141318e-04	ci right 5.939024e-04	k: 752	n:1360000
ZMYM2   1360000 perm   1100 sec   (1236 perm/sec)   p_kst 5.529412e-04   p_cons 5.419346e-01   p_joint 1.035294e-03

Joint ci ratio: 1.040087e-01	ci left: 9.818846e-04	ci right 1.090316e-03	k: 1418	n:1370000
Cons ci ratio: 3.078528e-03	ci left: 5.411828e-01	ci right 5.428521e-01	k: 742564	n:1370000
KS ci ratio: 1.422475e-01	ci left: 5.146024e-04	ci right 5.941030e-04	k: 758	n:1370000
ZMYM2   1370000 perm   1114 sec   (1230 perm/sec)   p_kst 5.532847e-04   p_cons 5.420175e-01   p_joint 1.035036e-03

Joint ci ratio: 1.035716e-01	ci left: 9.832394e-04	ci right 1.091336e-03	k: 1430	n:1380000
Cons ci ratio: 3.067525e-03	ci left: 5.411581e-01	ci right 5.428214e-01	k: 747946	n:1380000
KS ci ratio: 1.414114e-01	ci left: 5.171638e-04	ci right 5.965509e-04	k: 767	n:1380000
ZMYM2   1380000 perm   1128 sec   (1224 perm/sec)   p_kst 5.557971e-04   p_cons 5.419899e-01   p_joint 1.036232e-03

Joint ci ratio: 1.034274e-01	ci left: 9.789689e-04	ci right 1.086437e-03	k: 1434	n:1390000
Cons ci ratio: 3.056776e-03	ci left: 5.411116e-01	ci right 5.427688e-01	k: 753297	n:1390000
KS ci ratio: 1.410447e-01	ci left: 5.162192e-04	ci right 5.952385e-04	k: 771	n:1390000
ZMYM2   1390000 perm   1142 sec   (1217 perm/sec)   p_kst 5.546763e-04   p_cons 5.419403e-01   p_joint 1.031655e-03

Joint ci ratio: 1.033197e-01	ci left: 9.740636e-04	ci right 1.080875e-03	k: 1437	n:1400000
Cons ci ratio: 3.045898e-03	ci left: 5.411050e-01	ci right 5.427563e-01	k: 758703	n:1400000
KS ci ratio: 1.406807e-01	ci left: 5.152884e-04	ci right 5.939446e-04	k: 775	n:1400000
ZMYM2   1400000 perm   1156 sec   (1211 perm/sec)   p_kst 5.535714e-04   p_cons 5.419307e-01   p_joint 1.026429e-03

Joint ci ratio: 1.028558e-01	ci left: 9.761375e-04	ci right 1.082667e-03	k: 1450	n:1410000
Cons ci ratio: 3.035205e-03	ci left: 5.410871e-01	ci right 5.427326e-01	k: 764093	n:1410000
KS ci ratio: 1.400504e-01	ci left: 5.164241e-04	ci right 5.948709e-04	k: 782	n:1410000
ZMYM2   1410000 perm   1170 sec   (1205 perm/sec)   p_kst 5.546099e-04   p_cons 5.419099e-01   p_joint 1.028369e-03

Joint ci ratio: 1.037184e-01	ci left: 9.527979e-04	ci right 1.057705e-03	k: 1426	n:1420000
Cons ci ratio: 3.024649e-03	ci left: 5.410653e-01	ci right 5.427050e-01	k: 769477	n:1420000
KS ci ratio: 1.396054e-01	ci left: 5.161852e-04	ci right 5.943259e-04	k: 787	n:1420000
ZMYM2   1420000 perm   1185 sec   (1199 perm/sec)   p_kst 5.542254e-04   p_cons 5.418852e-01   p_joint 1.004225e-03

Joint ci ratio: 9.938579e-02	ci left: 1.032694e-03	ci right 1.141371e-03	k: 1553	n:1430000
Cons ci ratio: 3.014012e-03	ci left: 5.410753e-01	ci right 5.427092e-01	k: 774906	n:1430000
KS ci ratio: 1.315798e-01	ci left: 5.794611e-04	ci right 6.617441e-04	k: 886	n:1430000
ZMYM2   1430000 perm   1199 sec   (1193 perm/sec)   p_kst 6.195804e-04   p_cons 5.418923e-01   p_joint 1.086014e-03

Joint ci ratio: 9.900423e-02	ci left: 1.033649e-03	ci right 1.141985e-03	k: 1565	n:1440000
Cons ci ratio: 3.003490e-03	ci left: 5.410844e-01	ci right 5.427127e-01	k: 780334	n:1440000
KS ci ratio: 1.308442e-01	ci left: 5.821536e-04	ci right 6.643209e-04	k: 896	n:1440000
ZMYM2   1440000 perm   1214 sec   (1187 perm/sec)   p_kst 6.222222e-04   p_cons 5.418986e-01   p_joint 1.086806e-03

Joint ci ratio: 9.954699e-02	ci left: 1.015087e-03	ci right 1.122095e-03	k: 1548	n:1450000
Cons ci ratio: 2.993157e-03	ci left: 5.410803e-01	ci right 5.427030e-01	k: 785743	n:1450000
KS ci ratio: 1.301925e-01	ci left: 5.841430e-04	ci right 6.661487e-04	k: 905	n:1450000
ZMYM2   1450000 perm   1228 sec   (1180 perm/sec)   p_kst 6.241379e-04   p_cons 5.418917e-01   p_joint 1.067586e-03

Joint ci ratio: 1.016036e-01	ci left: 9.667350e-04	ci right 1.070877e-03	k: 1486	n:1460000
Cons ci ratio: 2.982971e-03	ci left: 5.410695e-01	ci right 5.426865e-01	k: 791142	n:1460000
KS ci ratio: 1.297636e-01	ci left: 5.841180e-04	ci right 6.658292e-04	k: 911	n:1460000
ZMYM2   1460000 perm   1243 sec   (1175 perm/sec)   p_kst 6.239726e-04   p_cons 5.418781e-01   p_joint 1.017808e-03

Joint ci ratio: 1.010612e-01	ci left: 9.707672e-04	ci right 1.074752e-03	k: 1502	n:1470000
Cons ci ratio: 2.972733e-03	ci left: 5.410846e-01	ci right 5.426962e-01	k: 796579	n:1470000
KS ci ratio: 1.288482e-01	ci left: 5.887020e-04	ci right 6.704291e-04	k: 924	n:1470000
ZMYM2   1470000 perm   1258 sec   (1168 perm/sec)   p_kst 6.285714e-04   p_cons 5.418905e-01   p_joint 1.021769e-03

Joint ci ratio: 1.024351e-01	ci left: 9.378679e-04	ci right 1.039777e-03	k: 1462	n:1480000
Cons ci ratio: 2.962697e-03	ci left: 5.410834e-01	ci right 5.426895e-01	k: 801992	n:1480000
KS ci ratio: 1.284324e-01	ci left: 5.886479e-04	ci right 6.700836e-04	k: 930	n:1480000
ZMYM2   1480000 perm   1274 sec   (1162 perm/sec)   p_kst 6.283784e-04   p_cons 5.418865e-01   p_joint 9.878378e-04

Joint ci ratio: 1.019829e-01	ci left: 9.400753e-04	ci right 1.041746e-03	k: 1475	n:1490000
Cons ci ratio: 2.952977e-03	ci left: 5.410459e-01	ci right 5.426466e-01	k: 807351	n:1490000
KS ci ratio: 1.280889e-01	ci left: 5.879452e-04	ci right 6.690497e-04	k: 935	n:1490000
ZMYM2   1490000 perm   1289 sec   (1156 perm/sec)   p_kst 6.275168e-04   p_cons 5.418463e-01   p_joint 9.899329e-04

Joint ci ratio: 1.014344e-01	ci left: 9.442036e-04	ci right 1.045739e-03	k: 1491	n:1500000
Cons ci ratio: 2.942973e-03	ci left: 5.410729e-01	ci right 5.426683e-01	k: 812806	n:1500000
KS ci ratio: 1.273426e-01	ci left: 5.911247e-04	ci right 6.721568e-04	k: 946	n:1500000
ZMYM2   1500000 perm   1305 sec   (1149 perm/sec)   p_kst 6.306667e-04   p_cons 5.418707e-01   p_joint 9.940000e-04

Joint ci ratio: 1.011974e-01	ci left: 9.424688e-04	ci right 1.043567e-03	k: 1498	n:1510000
Cons ci ratio: 2.933359e-03	ci left: 5.410506e-01	ci right 5.426406e-01	k: 818187	n:1510000
KS ci ratio: 1.270078e-01	ci left: 5.904159e-04	ci right 6.711220e-04	k: 951	n:1510000
ZMYM2   1510000 perm   1320 sec   (1144 perm/sec)   p_kst 6.298013e-04   p_cons 5.418457e-01   p_joint 9.920530e-04

Joint ci ratio: 1.007947e-01	ci left: 9.439637e-04	ci right 1.044795e-03	k: 1510	n:1520000
Cons ci ratio: 2.923715e-03	ci left: 5.410496e-01	ci right 5.426344e-01	k: 823600	n:1520000
KS ci ratio: 1.267419e-01	ci left: 5.890796e-04	ci right 6.694218e-04	k: 955	n:1520000
ZMYM2   1520000 perm   1338 sec   (1136 perm/sec)   p_kst 6.282895e-04   p_cons 5.418421e-01   p_joint 9.934211e-04

Joint ci ratio: 1.005621e-01	ci left: 9.422540e-04	ci right 1.042657e-03	k: 1517	n:1530000
Cons ci ratio: 2.914258e-03	ci left: 5.410330e-01	ci right 5.426126e-01	k: 828989	n:1530000
KS ci ratio: 1.261494e-01	ci left: 5.909257e-04	ci right 6.711148e-04	k: 964	n:1530000
ZMYM2   1530000 perm   1353 sec   (1131 perm/sec)   p_kst 6.300654e-04   p_cons 5.418229e-01   p_joint 9.915033e-04

Joint ci ratio: 9.997091e-02	ci left: 9.475308e-04	ci right 1.047868e-03	k: 1535	n:1540000
Cons ci ratio: 2.904721e-03	ci left: 5.410458e-01	ci right 5.426203e-01	k: 834423	n:1540000
KS ci ratio: 1.256943e-01	ci left: 5.914908e-04	ci right 6.714455e-04	k: 971	n:1540000
ZMYM2   1540000 perm   1369 sec   (1125 perm/sec)   p_kst 6.305195e-04   p_cons 5.418331e-01   p_joint 9.967532e-04

Joint ci ratio: 9.955042e-02	ci left: 9.495956e-04	ci right 1.049703e-03	k: 1548	n:1550000
Cons ci ratio: 2.895435e-03	ci left: 5.410313e-01	ci right 5.426008e-01	k: 839815	n:1550000
KS ci ratio: 1.253723e-01	ci left: 5.907993e-04	ci right 6.704406e-04	k: 976	n:1550000
ZMYM2   1550000 perm   1385 sec   (1119 perm/sec)   p_kst 6.296774e-04   p_cons 5.418161e-01   p_joint 9.987097e-04

Joint ci ratio: 9.175689e-02	ci left: 1.114959e-03	ci right 1.222804e-03	k: 1822	n:1560000
Cons ci ratio: 2.885775e-03	ci left: 5.410966e-01	ci right 5.426609e-01	k: 845331	n:1560000
KS ci ratio: 1.247355e-01	ci left: 5.932219e-04	ci right 6.727536e-04	k: 986	n:1560000
ZMYM2   1560000 perm   1402 sec   (1113 perm/sec)   p_kst 6.320513e-04   p_cons 5.418788e-01   p_joint 1.167949e-03

Joint ci ratio: 9.150631e-02	ci left: 1.114081e-03	ci right 1.221531e-03	k: 1832	n:1570000
Cons ci ratio: 2.876514e-03	ci left: 5.411088e-01	ci right 5.426681e-01	k: 850765	n:1570000
KS ci ratio: 1.244208e-01	ci left: 5.925288e-04	ci right 6.717524e-04	k: 991	n:1570000
ZMYM2   1570000 perm   1418 sec   (1107 perm/sec)   p_kst 6.312102e-04   p_cons 5.418885e-01   p_joint 1.166879e-03

Joint ci ratio: 9.113408e-02	ci left: 1.116306e-03	ci right 1.223510e-03	k: 1847	n:1580000
Cons ci ratio: 2.867495e-03	ci left: 5.410942e-01	ci right 5.426487e-01	k: 856157	n:1580000
KS ci ratio: 1.236748e-01	ci left: 5.961380e-04	ci right 6.753312e-04	k: 1003	n:1580000
ZMYM2   1580000 perm   1434 sec   (1101 perm/sec)   p_kst 6.348101e-04   p_cons 5.418715e-01   p_joint 1.168987e-03

Joint ci ratio: 9.088855e-02	ci left: 1.115432e-03	ci right 1.222248e-03	k: 1857	n:1590000
Cons ci ratio: 2.858553e-03	ci left: 5.410811e-01	ci right 5.426307e-01	k: 861551	n:1590000
KS ci ratio: 1.234905e-01	ci left: 5.942171e-04	ci right 6.730290e-04	k: 1006	n:1590000
ZMYM2   1590000 perm   1452 sec   (1095 perm/sec)   p_kst 6.327044e-04   p_cons 5.418560e-01   p_joint 1.167925e-03

Joint ci ratio: 9.071796e-02	ci left: 1.112736e-03	ci right 1.219083e-03	k: 1864	n:1600000
Cons ci ratio: 2.849554e-03	ci left: 5.410926e-01	ci right 5.426373e-01	k: 866984	n:1600000
KS ci ratio: 1.231851e-01	ci left: 5.935318e-04	ci right 6.720440e-04	k: 1011	n:1600000
ZMYM2   1600000 perm   1469 sec   (1089 perm/sec)   p_kst 6.318750e-04   p_cons 5.418650e-01   p_joint 1.165000e-03

Joint ci ratio: 9.275723e-02	ci left: 1.056667e-03	ci right 1.160048e-03	k: 1783	n:1610000
Cons ci ratio: 2.840707e-03	ci left: 5.410921e-01	ci right 5.426320e-01	k: 872398	n:1610000
KS ci ratio: 1.229425e-01	ci left: 5.922533e-04	ci right 6.704307e-04	k: 1015	n:1610000
ZMYM2   1610000 perm   1486 sec   (1084 perm/sec)   p_kst 6.304348e-04   p_cons 5.418621e-01   p_joint 1.107453e-03

Joint ci ratio: 9.262769e-02	ci left: 1.053159e-03	ci right 1.156046e-03	k: 1788	n:1620000
Cons ci ratio: 2.831981e-03	ci left: 5.410848e-01	ci right 5.426199e-01	k: 877801	n:1620000
KS ci ratio: 1.227615e-01	ci left: 5.903923e-04	ci right 6.682010e-04	k: 1018	n:1620000
ZMYM2   1620000 perm   1503 sec   (1078 perm/sec)   p_kst 6.283951e-04   p_cons 5.418525e-01   p_joint 1.103704e-03

Joint ci ratio: 9.219053e-02	ci left: 1.056886e-03	ci right 1.159624e-03	k: 1805	n:1630000
Cons ci ratio: 2.823338e-03	ci left: 5.410771e-01	ci right 5.426075e-01	k: 883203	n:1630000
KS ci ratio: 1.222228e-01	ci left: 5.921226e-04	ci right 6.697922e-04	k: 1027	n:1630000
ZMYM2   1630000 perm   1520 sec   (1073 perm/sec)   p_kst 6.300613e-04   p_cons 5.418423e-01   p_joint 1.107362e-03

Joint ci ratio: 9.170916e-02	ci left: 1.061761e-03	ci right 1.164404e-03	k: 1824	n:1640000
Cons ci ratio: 2.814740e-03	ci left: 5.410755e-01	ci right 5.426012e-01	k: 888615	n:1640000
KS ci ratio: 1.216912e-01	ci left: 5.938325e-04	ci right 6.713632e-04	k: 1036	n:1640000
ZMYM2   1640000 perm   1537 sec   (1067 perm/sec)   p_kst 6.317073e-04   p_cons 5.418384e-01   p_joint 1.112195e-03

Joint ci ratio: 9.153390e-02	ci left: 1.059471e-03	ci right 1.161687e-03	k: 1831	n:1650000
Cons ci ratio: 2.806140e-03	ci left: 5.410879e-01	ci right 5.426090e-01	k: 894050	n:1650000
KS ci ratio: 1.213989e-01	ci left: 5.931717e-04	ci right 6.704167e-04	k: 1041	n:1650000
ZMYM2   1650000 perm   1554 sec   (1062 perm/sec)   p_kst 6.309091e-04   p_cons 5.418485e-01   p_joint 1.109697e-03

Joint ci ratio: 9.186107e-02	ci left: 1.045437e-03	ci right 1.146678e-03	k: 1818	n:1660000
Cons ci ratio: 2.797636e-03	ci left: 5.410971e-01	ci right 5.426136e-01	k: 899480	n:1660000
KS ci ratio: 1.211088e-01	ci left: 5.925190e-04	ci right 6.694814e-04	k: 1046	n:1660000
ZMYM2   1660000 perm   1571 sec   (1057 perm/sec)   p_kst 6.301205e-04   p_cons 5.418554e-01   p_joint 1.095181e-03

Joint ci ratio: 9.158457e-02	ci left: 1.045612e-03	ci right 1.146550e-03	k: 1829	n:1670000
Cons ci ratio: 2.789199e-03	ci left: 5.411080e-01	ci right 5.426200e-01	k: 904913	n:1670000
KS ci ratio: 1.207059e-01	ci left: 5.930359e-04	ci right 6.697909e-04	k: 1053	n:1670000
ZMYM2   1670000 perm   1588 sec   (1052 perm/sec)   p_kst 6.305389e-04   p_cons 5.418641e-01   p_joint 1.095210e-03

Joint ci ratio: 9.133539e-02	ci left: 1.045205e-03	ci right 1.145814e-03	k: 1839	n:1680000
Cons ci ratio: 2.781094e-03	ci left: 5.410730e-01	ci right 5.425804e-01	k: 910269	n:1680000
KS ci ratio: 1.204776e-01	ci left: 5.918150e-04	ci right 6.682568e-04	k: 1057	n:1680000
ZMYM2   1680000 perm   1605 sec   (1047 perm/sec)   p_kst 6.291667e-04   p_cons 5.418268e-01   p_joint 1.094643e-03

Joint ci ratio: 9.098980e-02	ci left: 1.047115e-03	ci right 1.147506e-03	k: 1853	n:1690000
Cons ci ratio: 2.772842e-03	ci left: 5.410774e-01	ci right 5.425804e-01	k: 915691	n:1690000
KS ci ratio: 1.199683e-01	ci left: 5.934785e-04	ci right 6.697881e-04	k: 1066	n:1690000
ZMYM2   1690000 perm   1623 sec   (1042 perm/sec)   p_kst 6.307692e-04   p_cons 5.418290e-01   p_joint 1.096450e-03

Joint ci ratio: 9.050272e-02	ci left: 1.052454e-03	ci right 1.152788e-03	k: 1873	n:1700000
Cons ci ratio: 2.764649e-03	ci left: 5.410842e-01	ci right 5.425827e-01	k: 921117	n:1700000
KS ci ratio: 1.196324e-01	ci left: 5.934111e-04	ci right 6.694833e-04	k: 1072	n:1700000
ZMYM2   1700000 perm   1640 sec   (1037 perm/sec)   p_kst 6.305882e-04   p_cons 5.418335e-01   p_joint 1.101765e-03

Joint ci ratio: 8.997583e-02	ci left: 1.058874e-03	ci right 1.159202e-03	k: 1895	n:1710000
Cons ci ratio: 2.756564e-03	ci left: 5.410844e-01	ci right 5.425786e-01	k: 926532	n:1710000
KS ci ratio: 1.189140e-01	ci left: 5.973164e-04	ci right 6.733972e-04	k: 1085	n:1710000
ZMYM2   1710000 perm   1657 sec   (1032 perm/sec)   p_kst 6.345029e-04   p_cons 5.418316e-01   p_joint 1.108187e-03

Joint ci ratio: 8.964540e-02	ci left: 1.060675e-03	ci right 1.160785e-03	k: 1909	n:1720000
Cons ci ratio: 2.748270e-03	ci left: 5.411353e-01	ci right 5.426251e-01	k: 932034	n:1720000
KS ci ratio: 1.185869e-01	ci left: 5.972284e-04	ci right 6.730740e-04	k: 1091	n:1720000
ZMYM2   1720000 perm   1675 sec   (1027 perm/sec)   p_kst 6.343023e-04   p_cons 5.418802e-01   p_joint 1.109884e-03

Joint ci ratio: 8.948168e-02	ci left: 1.058499e-03	ci right 1.158212e-03	k: 1916	n:1730000
Cons ci ratio: 2.740267e-03	ci left: 5.411462e-01	ci right 5.426317e-01	k: 937468	n:1730000
KS ci ratio: 1.183164e-01	ci left: 5.965808e-04	ci right 6.721592e-04	k: 1096	n:1730000
ZMYM2   1730000 perm   1692 sec   (1022 perm/sec)   p_kst 6.335260e-04   p_cons 5.418890e-01   p_joint 1.107514e-03

Joint ci ratio: 8.924923e-02	ci left: 1.058035e-03	ci right 1.157431e-03	k: 1926	n:1740000
Cons ci ratio: 2.732501e-03	ci left: 5.411266e-01	ci right 5.426078e-01	k: 942849	n:1740000
KS ci ratio: 1.178873e-01	ci left: 5.976140e-04	ci right 6.730296e-04	k: 1104	n:1740000
ZMYM2   1740000 perm   1710 sec   (1018 perm/sec)   p_kst 6.344828e-04   p_cons 5.418672e-01   p_joint 1.106897e-03

Joint ci ratio: 8.244107e-02	ci left: 1.237082e-03	ci right 1.344008e-03	k: 2257	n:1750000
Cons ci ratio: 2.724955e-03	ci left: 5.410792e-01	ci right 5.425561e-01	k: 948181	n:1750000
KS ci ratio: 1.176215e-01	ci left: 5.969721e-04	ci right 6.721250e-04	k: 1109	n:1750000
ZMYM2   1750000 perm   1727 sec   (1013 perm/sec)   p_kst 6.337143e-04   p_cons 5.418177e-01   p_joint 1.289714e-03

Joint ci ratio: 8.220477e-02	ci left: 1.237287e-03	ci right 1.343910e-03	k: 2270	n:1760000
Cons ci ratio: 2.717489e-03	ci left: 5.410289e-01	ci right 5.425017e-01	k: 953507	n:1760000
KS ci ratio: 1.174102e-01	ci left: 5.957861e-04	ci right 6.706457e-04	k: 1113	n:1760000
ZMYM2   1760000 perm   1745 sec   (1009 perm/sec)   p_kst 6.323864e-04   p_cons 5.417653e-01   p_joint 1.289773e-03

Joint ci ratio: 8.222320e-02	ci left: 1.229743e-03	ci right 1.335741e-03	k: 2269	n:1770000
Cons ci ratio: 2.709945e-03	ci left: 5.410046e-01	ci right 5.424732e-01	k: 958878	n:1770000
KS ci ratio: 1.170953e-01	ci left: 5.957105e-04	ci right 6.703459e-04	k: 1119	n:1770000
ZMYM2   1770000 perm   1763 sec   (1004 perm/sec)   p_kst 6.322034e-04   p_cons 5.417390e-01   p_joint 1.281921e-03

Joint ci ratio: 8.193487e-02	ci left: 1.231639e-03	ci right 1.337410e-03	k: 2285	n:1780000
Cons ci ratio: 2.702259e-03	ci left: 5.410183e-01	ci right 5.424827e-01	k: 964316	n:1780000
KS ci ratio: 1.167311e-01	ci left: 5.961814e-04	ci right 6.706274e-04	k: 1126	n:1780000
ZMYM2   1780000 perm   1781 sec   (999 perm/sec)   p_kst 6.325843e-04   p_cons 5.417506e-01   p_joint 1.283708e-03

Joint ci ratio: 8.166732e-02	ci left: 1.232967e-03	ci right 1.338490e-03	k: 2300	n:1790000
Cons ci ratio: 2.694811e-03	ci left: 5.409999e-01	ci right 5.424603e-01	k: 969697	n:1790000
KS ci ratio: 1.162165e-01	ci left: 5.982746e-04	ci right 6.726302e-04	k: 1136	n:1790000
ZMYM2   1790000 perm   1799 sec   (995 perm/sec)   p_kst 6.346369e-04   p_cons 5.417302e-01   p_joint 1.284916e-03

Joint ci ratio: 8.147286e-02	ci left: 1.232104e-03	ci right 1.337289e-03	k: 2311	n:1800000
Cons ci ratio: 2.687268e-03	ci left: 5.410107e-01	ci right 5.424670e-01	k: 975130	n:1800000
KS ci ratio: 1.157086e-01	ci left: 6.003453e-04	ci right 6.746099e-04	k: 1146	n:1800000
ZMYM2   1800000 perm   1817 sec   (991 perm/sec)   p_kst 6.366667e-04   p_cons 5.417389e-01   p_joint 1.283889e-03

Joint ci ratio: 8.119233e-02	ci left: 1.233956e-03	ci right 1.338920e-03	k: 2327	n:1810000
Cons ci ratio: 2.679654e-03	ci left: 5.410462e-01	ci right 5.424985e-01	k: 980608	n:1810000
KS ci ratio: 1.154072e-01	ci left: 6.002476e-04	ci right 6.742935e-04	k: 1152	n:1810000
ZMYM2   1810000 perm   1835 sec   (986 perm/sec)   p_kst 6.364641e-04   p_cons 5.417724e-01   p_joint 1.285635e-03

Joint ci ratio: 8.128006e-02	ci left: 1.224485e-03	ci right 1.328761e-03	k: 2322	n:1820000
Cons ci ratio: 2.672104e-03	ci left: 5.410813e-01	ci right 5.425296e-01	k: 986086	n:1820000
KS ci ratio: 1.150089e-01	ci left: 6.012185e-04	ci right 6.751108e-04	k: 1160	n:1820000
ZMYM2   1820000 perm   1853 sec   (982 perm/sec)   p_kst 6.373626e-04   p_cons 5.418055e-01   p_joint 1.275824e-03

Joint ci ratio: 8.136807e-02	ci left: 1.215117e-03	ci right 1.318712e-03	k: 2317	n:1830000
Cons ci ratio: 2.664975e-03	ci left: 5.410494e-01	ci right 5.424937e-01	k: 991442	n:1830000
KS ci ratio: 1.148607e-01	ci left: 5.995253e-04	ci right 6.731081e-04	k: 1163	n:1830000
ZMYM2   1830000 perm   1872 sec   (978 perm/sec)   p_kst 6.355191e-04   p_cons 5.417716e-01   p_joint 1.266120e-03

Joint ci ratio: 8.217086e-02	ci left: 1.184556e-03	ci right 1.286590e-03	k: 2272	n:1840000
Cons ci ratio: 2.723123e-03	ci left: 5.289579e-01	ci right 5.304008e-01	k: 974610	n:1840000
KS ci ratio: 1.144679e-01	ci left: 6.004902e-04	ci right 6.739224e-04	k: 1171	n:1840000
ZMYM2   1840000 perm   1890 sec   (973 perm/sec)   p_kst 6.364130e-04   p_cons 5.296793e-01   p_joint 1.234783e-03

Joint ci ratio: 8.202673e-02	ci left: 1.182388e-03	ci right 1.284048e-03	k: 2280	n:1850000
Cons ci ratio: 2.715638e-03	ci left: 5.289810e-01	ci right 5.304200e-01	k: 979946	n:1850000
KS ci ratio: 1.140308e-01	ci left: 6.019702e-04	ci right 6.752833e-04	k: 1180	n:1850000
ZMYM2   1850000 perm   1908 sec   (969 perm/sec)   p_kst 6.378378e-04   p_cons 5.297005e-01   p_joint 1.232432e-03

Joint ci ratio: 8.190127e-02	ci left: 1.179717e-03	ci right 1.280986e-03	k: 2287	n:1860000
Cons ci ratio: 2.708562e-03	ci left: 5.289399e-01	ci right 5.303750e-01	k: 985163	n:1860000
KS ci ratio: 1.137903e-01	ci left: 6.013453e-04	ci right 6.744175e-04	k: 1185	n:1860000
ZMYM2   1860000 perm   1927 sec   (965 perm/sec)   p_kst 6.370968e-04   p_cons 5.296575e-01   p_joint 1.229570e-03

Joint ci ratio: 8.170513e-02	ci left: 1.179171e-03	ci right 1.280138e-03	k: 2298	n:1870000
Cons ci ratio: 2.701248e-03	ci left: 5.289533e-01	ci right 5.303846e-01	k: 990481	n:1870000
KS ci ratio: 1.136467e-01	ci left: 5.996882e-04	ci right 6.724609e-04	k: 1188	n:1870000
ZMYM2   1870000 perm   1946 sec   (961 perm/sec)   p_kst 6.352941e-04   p_cons 5.296690e-01   p_joint 1.228877e-03

Joint ci ratio: 8.152806e-02	ci left: 1.178109e-03	ci right 1.278757e-03	k: 2308	n:1880000
Cons ci ratio: 2.693967e-03	ci left: 5.289713e-01	ci right 5.303988e-01	k: 995808	n:1880000
KS ci ratio: 1.132663e-01	ci left: 6.006330e-04	ci right 6.732600e-04	k: 1196	n:1880000
ZMYM2   1880000 perm   1965 sec   (957 perm/sec)   p_kst 6.361702e-04   p_cons 5.296851e-01   p_joint 1.227660e-03

Joint ci ratio: 8.124697e-02	ci left: 1.180169e-03	ci right 1.280628e-03	k: 2324	n:1890000
Cons ci ratio: 2.686634e-03	ci left: 5.290098e-01	ci right 5.304335e-01	k: 1001174	n:1890000
KS ci ratio: 1.128428e-01	ci left: 6.020823e-04	ci right 6.745943e-04	k: 1205	n:1890000
ZMYM2   1890000 perm   1984 sec   (953 perm/sec)   p_kst 6.375661e-04   p_cons 5.297217e-01   p_joint 1.229630e-03

Joint ci ratio: 7.703285e-02	ci left: 1.308613e-03	ci right 1.413969e-03	k: 2585	n:1900000
Cons ci ratio: 2.679739e-03	ci left: 5.289774e-01	ci right 5.303973e-01	k: 1006406	n:1900000
KS ci ratio: 1.125631e-01	ci left: 6.019823e-04	ci right 6.742907e-04	k: 1211	n:1900000
ZMYM2   1900000 perm   2003 sec   (949 perm/sec)   p_kst 6.373684e-04   p_cons 5.296874e-01   p_joint 1.360526e-03

Joint ci ratio: 7.400023e-02	ci left: 1.412718e-03	ci right 1.521786e-03	k: 2801	n:1910000
Cons ci ratio: 2.672897e-03	ci left: 5.289453e-01	ci right 5.303615e-01	k: 1011638	n:1910000
KS ci ratio: 1.124242e-01	ci left: 6.003570e-04	ci right 6.723752e-04	k: 1214	n:1910000
ZMYM2   1910000 perm   2022 sec   (945 perm/sec)   p_kst 6.356021e-04   p_cons 5.296534e-01   p_joint 1.466492e-03

Joint ci ratio: 7.371129e-02	ci left: 1.416607e-03	ci right 1.525530e-03	k: 2823	n:1920000
Cons ci ratio: 2.665756e-03	ci left: 5.289791e-01	ci right 5.303916e-01	k: 1016996	n:1920000
KS ci ratio: 1.118729e-01	ci left: 6.033049e-04	ci right 6.752985e-04	k: 1226	n:1920000
ZMYM2   1920000 perm   2041 sec   (941 perm/sec)   p_kst 6.385417e-04   p_cons 5.296854e-01   p_joint 1.470313e-03

Joint ci ratio: 7.350333e-02	ci left: 1.417405e-03	ci right 1.526069e-03	k: 2839	n:1930000
Cons ci ratio: 2.658943e-03	ci left: 5.289619e-01	ci right 5.303707e-01	k: 1022256	n:1930000
KS ci ratio: 1.115099e-01	ci left: 6.042083e-04	ci right 6.760603e-04	k: 1234	n:1930000
ZMYM2   1930000 perm   2060 sec   (937 perm/sec)   p_kst 6.393782e-04   p_cons 5.296663e-01   p_joint 1.470984e-03

Joint ci ratio: 7.333571e-02	ci left: 1.416677e-03	ci right 1.525026e-03	k: 2852	n:1940000
Cons ci ratio: 2.652072e-03	ci left: 5.289654e-01	ci right 5.303706e-01	k: 1027556	n:1940000
KS ci ratio: 1.113298e-01	ci left: 6.030982e-04	ci right 6.746948e-04	k: 1238	n:1940000
ZMYM2   1940000 perm   2080 sec   (933 perm/sec)   p_kst 6.381443e-04   p_cons 5.296680e-01   p_joint 1.470103e-03

Joint ci ratio: 7.318202e-02	ci left: 1.415453e-03	ci right 1.523472e-03	k: 2864	n:1950000
Cons ci ratio: 2.645349e-03	ci left: 5.289510e-01	ci right 5.303526e-01	k: 1032821	n:1950000
KS ci ratio: 1.111059e-01	ci left: 6.024981e-04	ci right 6.738702e-04	k: 1243	n:1950000
ZMYM2   1950000 perm   2100 sec   (929 perm/sec)   p_kst 6.374359e-04   p_cons 5.296518e-01   p_joint 1.468718e-03

Joint ci ratio: 7.310567e-02	ci left: 1.411236e-03	ci right 1.518817e-03	k: 2870	n:1960000
Cons ci ratio: 2.638774e-03	ci left: 5.289183e-01	ci right 5.303163e-01	k: 1038050	n:1960000
KS ci ratio: 1.106178e-01	ci left: 6.048808e-04	ci right 6.761999e-04	k: 1254	n:1960000
ZMYM2   1960000 perm   2119 sec   (925 perm/sec)   p_kst 6.397959e-04   p_cons 5.296173e-01   p_joint 1.464286e-03

Joint ci ratio: 7.296609e-02	ci left: 1.409554e-03	ci right 1.516793e-03	k: 2881	n:1970000
Cons ci ratio: 2.632123e-03	ci left: 5.289098e-01	ci right 5.303043e-01	k: 1043326	n:1970000
KS ci ratio: 1.104420e-01	ci left: 6.037847e-04	ci right 6.748540e-04	k: 1258	n:1970000
ZMYM2   1970000 perm   2139 sec   (921 perm/sec)   p_kst 6.385787e-04   p_cons 5.296071e-01   p_joint 1.462437e-03

Joint ci ratio: 7.358258e-02	ci left: 1.378636e-03	ci right 1.484447e-03	k: 2833	n:1980000
Cons ci ratio: 2.625505e-03	ci left: 5.289045e-01	ci right 5.302954e-01	k: 1048608	n:1980000
KS ci ratio: 1.100493e-01	ci left: 6.051554e-04	ci right 6.761163e-04	k: 1267	n:1980000
ZMYM2   1980000 perm   2159 sec   (917 perm/sec)   p_kst 6.398990e-04   p_cons 5.296000e-01   p_joint 1.430808e-03

Joint ci ratio: 7.338860e-02	ci left: 1.379108e-03	ci right 1.484663e-03	k: 2848	n:1990000
Cons ci ratio: 2.618794e-03	ci left: 5.289263e-01	ci right 5.303138e-01	k: 1053944	n:1990000
KS ci ratio: 1.097037e-01	ci left: 6.060240e-04	ci right 6.768493e-04	k: 1275	n:1990000
ZMYM2   1990000 perm   2179 sec   (913 perm/sec)   p_kst 6.407035e-04   p_cons 5.296201e-01   p_joint 1.431156e-03

Joint ci ratio: 7.324740e-02	ci left: 1.377611e-03	ci right 1.482841e-03	k: 2859	n:2000000
Cons ci ratio: 2.612360e-03	ci left: 5.289050e-01	ci right 5.302889e-01	k: 1059194	n:2000000
KS ci ratio: 1.094467e-01	ci left: 6.059117e-04	ci right 6.765472e-04	k: 1281	n:2000000
ZMYM2   2000000 perm   2199 sec   (909 perm/sec)   p_kst 6.405000e-04   p_cons 5.295970e-01   p_joint 1.429500e-03

Joint ci ratio: 7.309426e-02	ci left: 1.376618e-03	ci right 1.481543e-03	k: 2871	n:2010000
Cons ci ratio: 2.605812e-03	ci left: 5.289147e-01	ci right 5.302952e-01	k: 1064506	n:2010000
KS ci ratio: 1.091915e-01	ci left: 6.058007e-04	ci right 6.762480e-04	k: 1287	n:2010000
ZMYM2   2010000 perm   2220 sec   (906 perm/sec)   p_kst 6.402985e-04   p_cons 5.296050e-01   p_joint 1.428358e-03

Joint ci ratio: 7.401642e-02	ci left: 1.335300e-03	ci right 1.438415e-03	k: 2800	n:2020000
Cons ci ratio: 2.599235e-03	ci left: 5.289391e-01	ci right 5.303162e-01	k: 1069848	n:2020000
KS ci ratio: 1.088960e-01	ci left: 6.061725e-04	ci right 6.764600e-04	k: 1294	n:2020000
ZMYM2   2020000 perm   2240 sec   (902 perm/sec)   p_kst 6.405941e-04   p_cons 5.296277e-01   p_joint 1.386139e-03

Joint ci ratio: 7.389789e-02	ci left: 1.333074e-03	ci right 1.435845e-03	k: 2809	n:2030000
Cons ci ratio: 2.592747e-03	ci left: 5.289560e-01	ci right 5.303297e-01	k: 1075175	n:2030000
KS ci ratio: 1.087701e-01	ci left: 6.046240e-04	ci right 6.746458e-04	k: 1297	n:2030000
ZMYM2   2030000 perm   2261 sec   (898 perm/sec)   p_kst 6.389163e-04   p_cons 5.296429e-01   p_joint 1.383744e-03

Joint ci ratio: 7.370141e-02	ci left: 1.333757e-03	ci right 1.436295e-03	k: 2824	n:2040000
Cons ci ratio: 2.586446e-03	ci left: 5.289457e-01	ci right 5.303160e-01	k: 1080447	n:2040000
KS ci ratio: 1.085613e-01	ci left: 6.040445e-04	ci right 6.738563e-04	k: 1302	n:2040000
ZMYM2   2040000 perm   2281 sec   (894 perm/sec)   p_kst 6.382353e-04   p_cons 5.296309e-01   p_joint 1.384314e-03

Joint ci ratio: 7.342887e-02	ci left: 1.337306e-03	ci right 1.439721e-03	k: 2845	n:2050000
Cons ci ratio: 2.580335e-03	ci left: 5.289077e-01	ci right 5.302747e-01	k: 1085662	n:2050000
KS ci ratio: 1.080647e-01	ci left: 6.067931e-04	ci right 6.765813e-04	k: 1314	n:2050000
ZMYM2   2050000 perm   2301 sec   (891 perm/sec)   p_kst 6.409756e-04   p_cons 5.295912e-01   p_joint 1.387805e-03

Joint ci ratio: 7.380663e-02	ci left: 1.316995e-03	ci right 1.418395e-03	k: 2816	n:2060000
Cons ci ratio: 2.574057e-03	ci left: 5.289108e-01	ci right 5.302745e-01	k: 1090961	n:2060000
KS ci ratio: 1.077782e-01	ci left: 6.071538e-04	ci right 6.767867e-04	k: 1321	n:2060000
ZMYM2   2060000 perm   2322 sec   (887 perm/sec)   p_kst 6.412621e-04   p_cons 5.295927e-01   p_joint 1.366990e-03

Joint ci ratio: 7.357188e-02	ci left: 1.319168e-03	ci right 1.420399e-03	k: 2834	n:2070000
Cons ci ratio: 2.567750e-03	ci left: 5.289285e-01	ci right 5.302888e-01	k: 1096290	n:2070000
KS ci ratio: 1.074535e-01	ci left: 6.079814e-04	ci right 6.774859e-04	k: 1329	n:2070000
ZMYM2   2070000 perm   2343 sec   (884 perm/sec)   p_kst 6.420290e-04   p_cons 5.296087e-01   p_joint 1.369082e-03

Joint ci ratio: 7.340378e-02	ci left: 1.318961e-03	ci right 1.419935e-03	k: 2847	n:2080000
Cons ci ratio: 2.561659e-03	ci left: 5.289128e-01	ci right 5.302698e-01	k: 1101550	n:2080000
KS ci ratio: 1.072521e-01	ci left: 6.073977e-04	ci right 6.766971e-04	k: 1334	n:2080000
ZMYM2   2080000 perm   2363 sec   (880 perm/sec)   p_kst 6.413462e-04   p_cons 5.295913e-01   p_joint 1.368750e-03

Joint ci ratio: 7.319842e-02	ci left: 1.320166e-03	ci right 1.420937e-03	k: 2863	n:2090000
Cons ci ratio: 2.555518e-03	ci left: 5.289154e-01	ci right 5.302692e-01	k: 1106848	n:2090000
KS ci ratio: 1.070119e-01	ci left: 6.072854e-04	ci right 6.764070e-04	k: 1340	n:2090000
ZMYM2   2090000 perm   2384 sec   (877 perm/sec)   p_kst 6.411483e-04   p_cons 5.295923e-01   p_joint 1.369856e-03

Joint ci ratio: 7.326272e-02	ci left: 1.311542e-03	ci right 1.411746e-03	k: 2858	n:2100000
Cons ci ratio: 2.549658e-03	ci left: 5.288718e-01	ci right 5.302224e-01	k: 1112049	n:2100000
KS ci ratio: 1.068925e-01	ci left: 6.057839e-04	ci right 6.746528e-04	k: 1343	n:2100000
ZMYM2   2100000 perm   2406 sec   (873 perm/sec)   p_kst 6.395238e-04   p_cons 5.295471e-01   p_joint 1.360952e-03

Joint ci ratio: 7.304582e-02	ci left: 1.313235e-03	ci right 1.413260e-03	k: 2875	n:2110000
Cons ci ratio: 2.543641e-03	ci left: 5.288670e-01	ci right 5.302144e-01	k: 1117331	n:2110000
KS ci ratio: 1.065363e-01	ci left: 6.070645e-04	ci right 6.758346e-04	k: 1352	n:2110000
ZMYM2   2110000 perm   2427 sec   (870 perm/sec)   p_kst 6.407583e-04   p_cons 5.295408e-01   p_joint 1.362559e-03

Joint ci ratio: 7.348228e-02	ci left: 1.291296e-03	ci right 1.390262e-03	k: 2841	n:2120000
Cons ci ratio: 2.537694e-03	ci left: 5.288571e-01	ci right 5.302013e-01	k: 1122602	n:2120000
KS ci ratio: 1.062227e-01	ci left: 6.078742e-04	ci right 6.765207e-04	k: 1360	n:2120000
ZMYM2   2120000 perm   2447 sec   (866 perm/sec)   p_kst 6.415094e-04   p_cons 5.295292e-01   p_joint 1.340094e-03

Joint ci ratio: 7.326343e-02	ci left: 1.293069e-03	ci right 1.391863e-03	k: 2858	n:2130000
Cons ci ratio: 2.531745e-03	ci left: 5.288557e-01	ci right 5.301968e-01	k: 1127891	n:2130000
KS ci ratio: 1.058732e-01	ci left: 6.091336e-04	ci right 6.776819e-04	k: 1369	n:2130000
ZMYM2   2130000 perm   2469 sec   (863 perm/sec)   p_kst 6.427230e-04   p_cons 5.295263e-01   p_joint 1.341784e-03

Joint ci ratio: 7.304651e-02	ci left: 1.294825e-03	ci right 1.393448e-03	k: 2875	n:2140000
Cons ci ratio: 2.525591e-03	ci left: 5.289030e-01	ci right 5.302409e-01	k: 1133284	n:2140000
KS ci ratio: 1.055654e-01	ci left: 6.099267e-04	ci right 6.783522e-04	k: 1377	n:2140000
ZMYM2   2140000 perm   2490 sec   (860 perm/sec)   p_kst 6.434579e-04   p_cons 5.295720e-01   p_joint 1.343458e-03

Joint ci ratio: 7.367792e-02	ci left: 1.266429e-03	ci right 1.363759e-03	k: 2826	n:2150000
Cons ci ratio: 2.519762e-03	ci left: 5.288944e-01	ci right 5.302292e-01	k: 1138558	n:2150000
KS ci ratio: 1.051843e-01	ci left: 6.116184e-04	ci right 6.799708e-04	k: 1387	n:2150000
ZMYM2   2150000 perm   2511 sec   (856 perm/sec)   p_kst 6.451163e-04   p_cons 5.295619e-01   p_joint 1.314419e-03

Joint ci ratio: 7.350910e-02	ci left: 1.266474e-03	ci right 1.363575e-03	k: 2839	n:2160000
Cons ci ratio: 2.513940e-03	ci left: 5.288924e-01	ci right 5.302242e-01	k: 1143846	n:2160000
KS ci ratio: 1.048825e-01	ci left: 6.123933e-04	ci right 6.806237e-04	k: 1395	n:2160000
ZMYM2   2160000 perm   2532 sec   (853 perm/sec)   p_kst 6.458333e-04   p_cons 5.295583e-01   p_joint 1.314352e-03

Joint ci ratio: 7.335431e-02	ci left: 1.266066e-03	ci right 1.362922e-03	k: 2851	n:2170000
Cons ci ratio: 2.508240e-03	ci left: 5.288743e-01	ci right 5.302030e-01	k: 1149099	n:2170000
KS ci ratio: 1.046578e-01	ci left: 6.122637e-04	ci right 6.803246e-04	k: 1401	n:2170000
ZMYM2   2170000 perm   2554 sec   (850 perm/sec)   p_kst 6.456221e-04   p_cons 5.295387e-01   p_joint 1.313825e-03

Joint ci ratio: 7.353547e-02	ci left: 1.253954e-03	ci right 1.350131e-03	k: 2837	n:2180000
Cons ci ratio: 2.502534e-03	ci left: 5.288651e-01	ci right 5.301907e-01	k: 1154371	n:2180000
KS ci ratio: 1.045461e-01	ci left: 6.107953e-04	ci right 6.786160e-04	k: 1404	n:2180000
ZMYM2   2180000 perm   2576 sec   (846 perm/sec)   p_kst 6.440367e-04   p_cons 5.295280e-01   p_joint 1.301376e-03

Joint ci ratio: 7.338052e-02	ci left: 1.253607e-03	ci right 1.349546e-03	k: 2849	n:2190000
Cons ci ratio: 2.496787e-03	ci left: 5.288720e-01	ci right 5.301946e-01	k: 1159678	n:2190000
KS ci ratio: 1.042866e-01	ci left: 6.111191e-04	ci right 6.787971e-04	k: 1411	n:2190000
ZMYM2   2190000 perm   2598 sec   (843 perm/sec)   p_kst 6.442922e-04   p_cons 5.295333e-01   p_joint 1.300913e-03

Joint ci ratio: 7.320093e-02	ci left: 1.254156e-03	ci right 1.349892e-03	k: 2863	n:2200000
Cons ci ratio: 2.490889e-03	ci left: 5.289170e-01	ci right 5.302366e-01	k: 1165069	n:2200000
KS ci ratio: 1.040291e-01	ci left: 6.114403e-04	ci right 6.789763e-04	k: 1418	n:2200000
ZMYM2   2200000 perm   2620 sec   (840 perm/sec)   p_kst 6.445455e-04   p_cons 5.295768e-01   p_joint 1.301364e-03

Joint ci ratio: 7.317557e-02	ci left: 1.249369e-03	ci right 1.344705e-03	k: 2865	n:2210000
Cons ci ratio: 2.485124e-03	ci left: 5.289430e-01	ci right 5.302596e-01	k: 1170419	n:2210000
KS ci ratio: 1.039925e-01	ci left: 6.091142e-04	ci right 6.763683e-04	k: 1419	n:2210000
ZMYM2   2210000 perm   2642 sec   (837 perm/sec)   p_kst 6.420814e-04   p_cons 5.296014e-01   p_joint 1.296380e-03

Joint ci ratio: 7.298479e-02	ci left: 1.250375e-03	ci right 1.345528e-03	k: 2880	n:2220000
Cons ci ratio: 2.479689e-03	ci left: 5.289107e-01	ci right 5.302243e-01	k: 1175640	n:2220000
KS ci ratio: 1.036282e-01	ci left: 6.107581e-04	ci right 6.779430e-04	k: 1429	n:2220000
ZMYM2   2220000 perm   2663 sec   (834 perm/sec)   p_kst 6.436937e-04   p_cons 5.295676e-01   p_joint 1.297297e-03

Joint ci ratio: 7.282068e-02	ci left: 1.250491e-03	ci right 1.345430e-03	k: 2893	n:2230000
Cons ci ratio: 2.473975e-03	ci left: 5.289420e-01	ci right 5.302526e-01	k: 1181002	n:2230000
KS ci ratio: 1.033036e-01	ci left: 6.119507e-04	ci right 6.790432e-04	k: 1438	n:2230000
ZMYM2   2230000 perm   2685 sec   (830 perm/sec)   p_kst 6.448430e-04   p_cons 5.295973e-01   p_joint 1.297309e-03

Joint ci ratio: 7.051616e-02	ci left: 1.329089e-03	ci right 1.426672e-03	k: 3085	n:2240000
Cons ci ratio: 2.468480e-03	ci left: 5.289367e-01	ci right 5.302444e-01	k: 1186283	n:2240000
KS ci ratio: 1.030889e-01	ci left: 6.118282e-04	ci right 6.787594e-04	k: 1444	n:2240000
ZMYM2   2240000 perm   2707 sec   (827 perm/sec)   p_kst 6.446429e-04   p_cons 5.295906e-01   p_joint 1.377232e-03

Joint ci ratio: 7.067709e-02	ci left: 1.317069e-03	ci right 1.413999e-03	k: 3071	n:2250000
Cons ci ratio: 2.462988e-03	ci left: 5.289382e-01	ci right 5.302430e-01	k: 1191579	n:2250000
KS ci ratio: 1.030534e-01	ci left: 6.095419e-04	ci right 6.761986e-04	k: 1445	n:2250000
ZMYM2   2250000 perm   2730 sec   (824 perm/sec)   p_kst 6.422222e-04   p_cons 5.295907e-01   p_joint 1.364889e-03

Joint ci ratio: 7.049372e-02	ci left: 1.318196e-03	ci right 1.414947e-03	k: 3087	n:2260000
Cons ci ratio: 2.457435e-03	ci left: 5.289596e-01	ci right 5.302615e-01	k: 1196920	n:2260000
KS ci ratio: 1.027694e-01	ci left: 6.102936e-04	ci right 6.768375e-04	k: 1453	n:2260000
ZMYM2   2260000 perm   2753 sec   (821 perm/sec)   p_kst 6.429204e-04   p_cons 5.296106e-01   p_joint 1.365929e-03

Joint ci ratio: 7.032311e-02	ci left: 1.318881e-03	ci right 1.415438e-03	k: 3102	n:2270000
Cons ci ratio: 2.452055e-03	ci left: 5.289531e-01	ci right 5.302521e-01	k: 1202198	n:2270000
KS ci ratio: 1.024528e-01	ci left: 6.114681e-04	ci right 6.779223e-04	k: 1462	n:2270000
ZMYM2   2270000 perm   2776 sec   (818 perm/sec)   p_kst 6.440529e-04   p_cons 5.296026e-01   p_joint 1.366520e-03

Joint ci ratio: 7.014247e-02	ci left: 1.319991e-03	ci right 1.416371e-03	k: 3118	n:2280000
Cons ci ratio: 2.446607e-03	ci left: 5.289677e-01	ci right 5.302638e-01	k: 1207524	n:2280000
KS ci ratio: 1.021044e-01	ci left: 6.130600e-04	ci right 6.794470e-04	k: 1472	n:2280000
ZMYM2   2280000 perm   2799 sec   (815 perm/sec)   p_kst 6.456140e-04   p_cons 5.296158e-01   p_joint 1.367544e-03

Joint ci ratio: 6.996321e-02	ci left: 1.321091e-03	ci right 1.417295e-03	k: 3134	n:2290000
Cons ci ratio: 2.441260e-03	ci left: 5.289690e-01	ci right 5.302624e-01	k: 1212820	n:2290000
KS ci ratio: 1.019315e-01	ci left: 6.125106e-04	ci right 6.787191e-04	k: 1477	n:2290000
ZMYM2   2290000 perm   2821 sec   (812 perm/sec)   p_kst 6.449782e-04   p_cons 5.296157e-01   p_joint 1.368559e-03

Joint ci ratio: 6.996342e-02	ci left: 1.315347e-03	ci right 1.411133e-03	k: 3134	n:2300000
Cons ci ratio: 2.435933e-03	ci left: 5.289734e-01	ci right 5.302639e-01	k: 1218123	n:2300000
KS ci ratio: 1.015542e-01	ci left: 6.145084e-04	ci right 6.806724e-04	k: 1488	n:2300000
ZMYM2   2300000 perm   2844 sec   (809 perm/sec)   p_kst 6.469565e-04   p_cons 5.296187e-01   p_joint 1.362609e-03

Joint ci ratio: 7.056344e-02	ci left: 1.287112e-03	ci right 1.381678e-03	k: 3081	n:2310000
Cons ci ratio: 2.430606e-03	ci left: 5.289847e-01	ci right 5.302724e-01	k: 1223442	n:2310000
KS ci ratio: 1.013842e-01	ci left: 6.139578e-04	ci right 6.799452e-04	k: 1493	n:2310000
ZMYM2   2310000 perm   2867 sec   (806 perm/sec)   p_kst 6.463203e-04   p_cons 5.296286e-01   p_joint 1.333766e-03

Joint ci ratio: 7.058658e-02	ci left: 1.280717e-03	ci right 1.374845e-03	k: 3079	n:2320000
Cons ci ratio: 2.425317e-03	ci left: 5.289954e-01	ci right 5.302804e-01	k: 1228760	n:2320000
KS ci ratio: 1.012488e-01	ci left: 6.129918e-04	ci right 6.787822e-04	k: 1497	n:2320000
ZMYM2   2320000 perm   2890 sec   (803 perm/sec)   p_kst 6.452586e-04   p_cons 5.296379e-01   p_joint 1.327155e-03

Joint ci ratio: 7.038115e-02	ci left: 1.282809e-03	ci right 1.376806e-03	k: 3097	n:2330000
Cons ci ratio: 2.420097e-03	ci left: 5.289988e-01	ci right 5.302810e-01	k: 1234061	n:2330000
KS ci ratio: 1.009124e-01	ci left: 6.145443e-04	ci right 6.802693e-04	k: 1507	n:2330000
ZMYM2   2330000 perm   2913 sec   (800 perm/sec)   p_kst 6.467811e-04   p_cons 5.296399e-01   p_joint 1.329185e-03

Joint ci ratio: 7.017750e-02	ci left: 1.284884e-03	ci right 1.378750e-03	k: 3115	n:2340000
Cons ci ratio: 2.414861e-03	ci left: 5.290124e-01	ci right 5.302918e-01	k: 1239386	n:2340000
KS ci ratio: 1.006126e-01	ci left: 6.156673e-04	ci right 6.813051e-04	k: 1516	n:2340000
ZMYM2   2340000 perm   2936 sec   (797 perm/sec)   p_kst 6.478632e-04   p_cons 5.296521e-01   p_joint 1.331197e-03

Joint ci ratio: 6.996443e-02	ci left: 1.287360e-03	ci right 1.381110e-03	k: 3134	n:2350000
Cons ci ratio: 2.409669e-03	ci left: 5.290237e-01	ci right 5.303004e-01	k: 1244706	n:2350000
KS ci ratio: 1.003483e-01	ci left: 6.163662e-04	ci right 6.818957e-04	k: 1524	n:2350000
ZMYM2   2350000 perm   2961 sec   (794 perm/sec)   p_kst 6.485106e-04   p_cons 5.296621e-01   p_joint 1.333617e-03

Joint ci ratio: 6.995346e-02	ci left: 1.282322e-03	ci right 1.375689e-03	k: 3135	n:2360000
Cons ci ratio: 2.404699e-03	ci left: 5.289960e-01	ci right 5.302700e-01	k: 1249934	n:2360000
KS ci ratio: 1.002170e-01	ci left: 6.154069e-04	ci right 6.807438e-04	k: 1528	n:2360000
ZMYM2   2360000 perm   2984 sec   (791 perm/sec)   p_kst 6.474576e-04   p_cons 5.296331e-01   p_joint 1.328390e-03

Joint ci ratio: 6.983113e-02	ci left: 1.281471e-03	ci right 1.374607e-03	k: 3146	n:2370000
Cons ci ratio: 2.399605e-03	ci left: 5.290006e-01	ci right 5.302719e-01	k: 1255238	n:2370000
KS ci ratio: 1.000862e-01	ci left: 6.144557e-04	ci right 6.796015e-04	k: 1532	n:2370000
ZMYM2   2370000 perm   3007 sec   (788 perm/sec)   p_kst 6.464135e-04   p_cons 5.296363e-01   p_joint 1.327426e-03

Joint ci ratio: 6.726861e-02	ci left: 1.376853e-03	ci right 1.473106e-03	k: 3390	n:2380000
Cons ci ratio: 2.394646e-03	ci left: 5.289837e-01	ci right 5.302524e-01	k: 1260491	n:2380000
KS ci ratio: 9.989096e-02	ci left: 6.143319e-04	ci right 6.793300e-04	k: 1538	n:2380000
ZMYM2   2380000 perm   3031 sec   (785 perm/sec)   p_kst 6.462185e-04   p_cons 5.296181e-01   p_joint 1.424370e-03

Outputting figure to mutsig2_images.part000000000194/ZMYM2.6_4226_2380000_0.00064622_0.52962_0.0014244.png
                gene_name: ZMYM2
               theta_stop: 0.100 
                    nperm: 2380000 
                     p_ks: 0.00065 
        ci_ks_bounds_left: 0.00061 
       ci_ks_bounds_right: 0.00068 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.0014 
     ci_joint_bounds_left: 0.0014 
    ci_joint_bounds_right: 0.0015 

Current progress: 27 percent done.
ZMYM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.465244e-02	ci left: 3.303159e-01	ci right 3.489775e-01	k: 3396	n:10000
Cons ci ratio: 2.338006e-02	ci left: 7.288590e-01	ci right 7.462025e-01	k: 7376	n:10000
KS ci ratio: 7.496836e-02	ci left: 2.065875e-01	ci right 2.227791e-01	k: 2146	n:10000
ZMYM3   10000 perm   2 sec   (4159 perm/sec)   p_kst 2.146000e-01   p_cons 7.376000e-01   p_joint 3.396000e-01

Outputting figure to mutsig2_images.part000000000194/ZMYM3.6_4227_10000_0.2146_0.7376_0.3396.png
                gene_name: ZMYM3
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 29 percent done.
ZFP36L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.785097e-01	ci left: 4.188120e-02	ci right 5.018585e-02	k: 459	n:10000
Cons ci ratio: 7.118065e-02	ci left: 2.243482e-01	ci right 2.410078e-01	k: 2326	n:10000
KS ci ratio: 2.260160e-01	ci left: 2.589329e-02	ci right 3.258470e-02	k: 291	n:10000
ZFP36L2   10000 perm   2 sec   (5916 perm/sec)   p_kst 2.910000e-02   p_cons 2.326000e-01   p_joint 4.590000e-02

Joint ci ratio: 1.703237e-01	ci left: 2.359904e-02	ci right 2.804027e-02	k: 515	n:20000
Cons ci ratio: 5.294060e-02	ci left: 2.094222e-01	ci right 2.208608e-01	k: 4302	n:20000
KS ci ratio: 1.569380e-01	ci left: 2.787170e-02	ci right 3.266616e-02	k: 604	n:20000
ZFP36L2   20000 perm   4 sec   (5183 perm/sec)   p_kst 3.020000e-02   p_cons 2.151000e-01   p_joint 2.575000e-02

Joint ci ratio: 1.177366e-01	ci left: 3.353168e-02	ci right 3.775886e-02	k: 1068	n:30000
Cons ci ratio: 4.291481e-02	ci left: 2.129087e-01	ci right 2.222794e-01	k: 6527	n:30000
KS ci ratio: 1.296583e-01	ci left: 2.764661e-02	ci right 3.151188e-02	k: 886	n:30000
ZFP36L2   30000 perm   6 sec   (4923 perm/sec)   p_kst 2.953333e-02   p_cons 2.175667e-01   p_joint 3.560000e-02

Joint ci ratio: 8.885366e-02	ci left: 4.433463e-02	ci right 4.848154e-02	k: 1855	n:40000
Cons ci ratio: 3.697811e-02	ci left: 2.152531e-01	ci right 2.233877e-01	k: 8772	n:40000
KS ci ratio: 1.146918e-01	ci left: 2.674533e-02	ci right 3.002362e-02	k: 1134	n:40000
ZFP36L2   40000 perm   8 sec   (4731 perm/sec)   p_kst 2.835000e-02   p_cons 2.193000e-01   p_joint 4.637500e-02

Joint ci ratio: 8.796457e-02	ci left: 3.651717e-02	ci right 3.989671e-02	k: 1909	n:50000
Cons ci ratio: 3.300729e-02	ci left: 2.163754e-01	ci right 2.236572e-01	k: 11000	n:50000
KS ci ratio: 1.025372e-01	ci left: 2.694191e-02	ci right 2.987318e-02	k: 1419	n:50000
ZFP36L2   50000 perm   11 sec   (4604 perm/sec)   p_kst 2.838000e-02   p_cons 2.200000e-01   p_joint 3.818000e-02

Joint ci ratio: 7.124374e-02	ci left: 4.631949e-02	ci right 4.975773e-02	k: 2881	n:60000
Cons ci ratio: 3.016980e-02	ci left: 2.162597e-01	ci right 2.229008e-01	k: 13174	n:60000
KS ci ratio: 9.357514e-02	ci left: 2.708536e-02	ci right 2.976051e-02	k: 1704	n:60000
ZFP36L2   60000 perm   13 sec   (4479 perm/sec)   p_kst 2.840000e-02   p_cons 2.195667e-01   p_joint 4.801667e-02

Outputting figure to mutsig2_images.part000000000194/ZFP36L2.5_1493_60000_0.0284_0.21957_0.048017.png
                gene_name: ZFP36L2
               theta_stop: 0.094 
                    nperm: 60000 
                     p_ks: 0.028 
        ci_ks_bounds_left: 0.027 
       ci_ks_bounds_right: 0.030 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.048 
     ci_joint_bounds_left: 0.046 
    ci_joint_bounds_right: 0.050 

Current progress: 31 percent done.
ZFP57
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.310124e-02	ci left: 5.739652e-01	ci right 5.933860e-01	k: 5837	n:10000
Cons ci ratio: 1.150142e-02	ci left: 9.153336e-01	ci right 9.260198e-01	k: 9208	n:10000
KS ci ratio: 5.304723e-02	ci left: 3.437266e-01	ci right 3.625590e-01	k: 3531	n:10000
ZFP57   10000 perm   2 sec   (5440 perm/sec)   p_kst 3.531000e-01   p_cons 9.208000e-01   p_joint 5.837000e-01

Outputting figure to mutsig2_images.part000000000194/ZFP57.5_1627_10000_0.3531_0.9208_0.5837.png
                gene_name: ZFP57
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 32 percent done.
ZFR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.459254e-01	ci left: 6.236946e-02	ci right 7.228440e-02	k: 672	n:10000
Cons ci ratio: 8.944993e-02	ci left: 1.538460e-01	ci right 1.683520e-01	k: 1610	n:10000
KS ci ratio: 2.155899e-01	ci left: 2.854258e-02	ci right 3.553353e-02	k: 319	n:10000
ZFR   10000 perm   2 sec   (4469 perm/sec)   p_kst 3.190000e-02   p_cons 1.610000e-01   p_joint 6.720000e-02

Joint ci ratio: 1.257277e-01	ci left: 4.342888e-02	ci right 4.930391e-02	k: 926	n:20000
Cons ci ratio: 6.255865e-02	ci left: 1.589418e-01	ci right 1.692560e-01	k: 3281	n:20000
KS ci ratio: 1.528191e-01	ci left: 2.941145e-02	ci right 3.432589e-02	k: 636	n:20000
ZFR   20000 perm   5 sec   (4034 perm/sec)   p_kst 3.180000e-02   p_cons 1.640500e-01   p_joint 4.630000e-02

Joint ci ratio: 1.184276e-01	ci left: 3.314310e-02	ci right 3.734752e-02	k: 1056	n:30000
Cons ci ratio: 5.102340e-02	ci left: 1.601889e-01	ci right 1.686095e-01	k: 4931	n:30000
KS ci ratio: 1.259045e-01	ci left: 2.932611e-02	ci right 3.329867e-02	k: 938	n:30000
ZFR   30000 perm   8 sec   (3859 perm/sec)   p_kst 3.126667e-02   p_cons 1.643667e-01   p_joint 3.520000e-02

Joint ci ratio: 9.854849e-02	ci left: 3.617182e-02	ci right 3.994562e-02	k: 1521	n:40000
Cons ci ratio: 4.433703e-02	ci left: 1.598383e-01	ci right 1.671106e-01	k: 6538	n:40000
KS ci ratio: 1.096715e-01	ci left: 2.925013e-02	ci right 3.266841e-02	k: 1237	n:40000
ZFR   40000 perm   11 sec   (3749 perm/sec)   p_kst 3.092500e-02   p_cons 1.634500e-01   p_joint 3.802500e-02

Joint ci ratio: 8.310727e-02	ci left: 4.082683e-02	ci right 4.438652e-02	k: 2129	n:50000
Cons ci ratio: 4.181005e-02	ci left: 1.463849e-01	ci right 1.526558e-01	k: 7475	n:50000
KS ci ratio: 9.781652e-02	ci left: 2.959573e-02	ci right 3.265902e-02	k: 1555	n:50000
ZFR   50000 perm   14 sec   (3666 perm/sec)   p_kst 3.110000e-02   p_cons 1.495000e-01   p_joint 4.258000e-02

Outputting figure to mutsig2_images.part000000000194/ZFR.5_3305_50000_0.0311_0.1495_0.04258.png
                gene_name: ZFR
               theta_stop: 0.098 
                    nperm: 50000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.030 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.043 
     ci_joint_bounds_left: 0.041 
    ci_joint_bounds_right: 0.044 

Current progress: 34 percent done.
ZFYVE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.299014e-02	ci left: 4.441065e-01	ci right 4.637203e-01	k: 4539	n:10000
Cons ci ratio: 8.729533e-02	ci left: 1.604251e-01	ci right 1.751689e-01	k: 1677	n:10000
KS ci ratio: 6.377672e-03	ci left: 9.710070e-01	ci right 9.773127e-01	k: 9743	n:10000
ZFYVE1   10000 perm   2 sec   (5638 perm/sec)   p_kst 9.743000e-01   p_cons 1.677000e-01   p_joint 4.539000e-01

Outputting figure to mutsig2_images.part000000000194/ZFYVE1.5_2378_10000_0.9743_0.1677_0.4539.png
                gene_name: ZFYVE1
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 36 percent done.
ZHX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.167093e-02	ci left: 5.953393e-01	ci right 6.145996e-01	k: 6050	n:10000
Cons ci ratio: 5.103114e-02	ci left: 3.615207e-01	ci right 3.805545e-01	k: 3710	n:10000
KS ci ratio: 3.676153e-02	ci left: 5.221621e-01	ci right 5.418192e-01	k: 5320	n:10000
ZHX2   10000 perm   2 sec   (5578 perm/sec)   p_kst 5.320000e-01   p_cons 3.710000e-01   p_joint 6.050000e-01

Outputting figure to mutsig2_images.part000000000194/ZHX2.5_2518_10000_0.532_0.371_0.605.png
                gene_name: ZHX2
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.61 

Current progress: 37 percent done.
ZIM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.950997e-02	ci left: 2.935057e-01	ci right 3.116095e-01	k: 3025	n:10000
Cons ci ratio: 1.445485e-01	ci left: 6.352868e-02	ci right 7.352445e-02	k: 684	n:10000
KS ci ratio: 1.372124e-02	ci left: 8.846253e-01	ci right 8.969460e-01	k: 8909	n:10000
ZIM3   10000 perm   2 sec   (5502 perm/sec)   p_kst 8.909000e-01   p_cons 6.840000e-02   p_joint 3.025000e-01

Joint ci ratio: 5.259812e-02	ci left: 2.116008e-01	ci right 2.230815e-01	k: 4346	n:20000
Cons ci ratio: 1.082314e-01	ci left: 5.820936e-02	ci right 6.491880e-02	k: 1230	n:20000
KS ci ratio: 9.882295e-03	ci left: 8.827852e-01	ci right 8.916019e-01	k: 17745	n:20000
ZIM3   20000 perm   4 sec   (4812 perm/sec)   p_kst 8.872500e-01   p_cons 6.150000e-02   p_joint 2.173000e-01

Joint ci ratio: 4.111589e-02	ci left: 2.277293e-01	ci right 2.373226e-01	k: 6975	n:30000
Cons ci ratio: 8.268265e-02	ci left: 6.681093e-02	ci right 7.260607e-02	k: 2090	n:30000
KS ci ratio: 8.125547e-03	ci left: 8.821807e-01	ci right 8.894111e-01	k: 26575	n:30000
ZIM3   30000 perm   7 sec   (4536 perm/sec)   p_kst 8.858333e-01   p_cons 6.966667e-02   p_joint 2.325000e-01

Outputting figure to mutsig2_images.part000000000194/ZIM3.5_1435_30000_0.88583_0.069667_0.2325.png
                gene_name: ZIM3
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.070 
      ci_cons_bounds_left: 0.067 
     ci_cons_bounds_right: 0.073 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 39 percent done.
ZKSCAN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.245979e-02	ci left: 2.181294e-01	ci right 2.346303e-01	k: 2263	n:10000
Cons ci ratio: 3.584875e-02	ci left: 5.346773e-01	ci right 5.542968e-01	k: 5445	n:10000
KS ci ratio: 1.014946e-01	ci left: 1.231736e-01	ci right 1.364429e-01	k: 1297	n:10000
ZKSCAN2   10000 perm   2 sec   (5240 perm/sec)   p_kst 1.297000e-01   p_cons 5.445000e-01   p_joint 2.263000e-01

Joint ci ratio: 5.528966e-02	ci left: 1.952669e-01	ci right 2.064202e-01	k: 4016	n:20000
Cons ci ratio: 2.617413e-02	ci left: 5.216531e-01	ci right 5.355386e-01	k: 10572	n:20000
KS ci ratio: 7.343592e-02	ci left: 1.201019e-01	ci right 1.293076e-01	k: 2493	n:20000
ZKSCAN2   20000 perm   4 sec   (4634 perm/sec)   p_kst 1.246500e-01   p_cons 5.286000e-01   p_joint 2.008000e-01

Outputting figure to mutsig2_images.part000000000194/ZKSCAN2.5_2932_20000_0.12465_0.5286_0.2008.png
                gene_name: ZKSCAN2
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 41 percent done.
ZMYM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.058452e-02	ci left: 2.860725e-01	ci right 3.040471e-01	k: 2950	n:10000
Cons ci ratio: 6.951078e-03	ci left: 9.660453e-01	ci right 9.728776e-01	k: 9696	n:10000
KS ci ratio: 8.432283e-02	ci left: 1.701542e-01	ci right 1.852341e-01	k: 1776	n:10000
ZMYM1   10000 perm   2 sec   (4620 perm/sec)   p_kst 1.776000e-01   p_cons 9.696000e-01   p_joint 2.950000e-01

Outputting figure to mutsig2_images.part000000000194/ZMYM1.5_3465_10000_0.1776_0.9696_0.295.png
                gene_name: ZMYM1
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 42 percent done.
ZFP14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.104208e-02	ci left: 3.614212e-01	ci right 3.804540e-01	k: 3709	n:10000
Cons ci ratio: 7.964445e-02	ci left: 1.871758e-01	ci right 2.028023e-01	k: 1949	n:10000
KS ci ratio: 5.525475e-02	ci left: 3.254505e-01	ci right 3.440459e-01	k: 3347	n:10000
ZFP14   10000 perm   2 sec   (5511 perm/sec)   p_kst 3.347000e-01   p_cons 1.949000e-01   p_joint 3.709000e-01

Outputting figure to mutsig2_images.part000000000194/ZFP14.4_1618_10000_0.3347_0.1949_0.3709.png
                gene_name: ZFP14
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 44 percent done.
ZFP28
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.987054e-02	ci left: 2.309646e-01	ci right 2.477875e-01	k: 2393	n:10000
Cons ci ratio: 9.045589e-02	ci left: 1.509016e-01	ci right 1.652982e-01	k: 1580	n:10000
KS ci ratio: 4.823153e-02	ci left: 3.880884e-01	ci right 4.073712e-01	k: 3977	n:10000
ZFP28   10000 perm   2 sec   (5510 perm/sec)   p_kst 3.977000e-01   p_cons 1.580000e-01   p_joint 2.393000e-01

Outputting figure to mutsig2_images.part000000000194/ZFP28.4_2639_10000_0.3977_0.158_0.2393.png
                gene_name: ZFP28
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 46 percent done.
ZIC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.001785e-02	ci left: 4.797565e-01	ci right 4.994495e-01	k: 4896	n:10000
Cons ci ratio: 2.059430e-02	ci left: 7.754984e-01	ci right 7.917361e-01	k: 7837	n:10000
KS ci ratio: 4.677321e-02	ci left: 4.028281e-01	ci right 4.222229e-01	k: 4125	n:10000
ZIC3   10000 perm   2 sec   (5929 perm/sec)   p_kst 4.125000e-01   p_cons 7.837000e-01   p_joint 4.896000e-01

Outputting figure to mutsig2_images.part000000000194/ZIC3.4_1416_10000_0.4125_0.7837_0.4896.png
                gene_name: ZIC3
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 47 percent done.
ZKSCAN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.497592e-02	ci left: 5.468981e-01	ci right 5.664689e-01	k: 5567	n:10000
Cons ci ratio: 7.122053e-02	ci left: 2.241507e-01	ci right 2.408054e-01	k: 2324	n:10000
KS ci ratio: 3.407791e-02	ci left: 5.597262e-01	ci right 5.792333e-01	k: 5695	n:10000
ZKSCAN3   10000 perm   2 sec   (6097 perm/sec)   p_kst 5.695000e-01   p_cons 2.324000e-01   p_joint 5.567000e-01

Outputting figure to mutsig2_images.part000000000194/ZKSCAN3.4_1637_10000_0.5695_0.2324_0.5567.png
                gene_name: ZKSCAN3
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 49 percent done.
ZMIZ1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.955229e-02	ci left: 2.932083e-01	ci right 3.113070e-01	k: 3022	n:10000
Cons ci ratio: 6.039576e-02	ci left: 2.873607e-01	ci right 3.053581e-01	k: 2963	n:10000
KS ci ratio: 7.459246e-02	ci left: 2.082639e-01	ci right 2.245016e-01	k: 2163	n:10000
ZMIZ1   10000 perm   2 sec   (4885 perm/sec)   p_kst 2.163000e-01   p_cons 2.963000e-01   p_joint 3.022000e-01

Outputting figure to mutsig2_images.part000000000194/ZMIZ1.4_3288_10000_0.2163_0.2963_0.3022.png
                gene_name: ZMIZ1
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 51 percent done.
ZMYM5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.547402e-01	ci left: 5.561671e-02	ci right 6.504144e-02	k: 602	n:10000
Cons ci ratio: 3.301551e-01	ci left: 1.160595e-02	ci right 1.628351e-02	k: 138	n:10000
KS ci ratio: 1.294424e-01	ci left: 7.853799e-02	ci right 8.950576e-02	k: 839	n:10000
ZMYM5   10000 perm   2 sec   (5532 perm/sec)   p_kst 8.390000e-02   p_cons 1.380000e-02   p_joint 6.020000e-02

Joint ci ratio: 1.863283e-01	ci left: 1.963004e-02	ci right 2.371068e-02	k: 432	n:20000
Cons ci ratio: 2.301256e-01	ci left: 1.265334e-02	ci right 1.599006e-02	k: 285	n:20000
KS ci ratio: 9.144234e-02	ci left: 8.028925e-02	ci right 8.803215e-02	k: 1682	n:20000
ZMYM5   20000 perm   4 sec   (4899 perm/sec)   p_kst 8.410000e-02   p_cons 1.425000e-02   p_joint 2.160000e-02

Joint ci ratio: 1.357744e-01	ci left: 2.519514e-02	ci right 2.889722e-02	k: 810	n:30000
Cons ci ratio: 1.833964e-01	ci left: 1.362316e-02	ci right 1.640526e-02	k: 449	n:30000
KS ci ratio: 7.373392e-02	ci left: 8.291652e-02	ci right 8.929724e-02	k: 2582	n:30000
ZMYM5   30000 perm   6 sec   (4662 perm/sec)   p_kst 8.606667e-02   p_cons 1.496667e-02   p_joint 2.700000e-02

Joint ci ratio: 1.313685e-01	ci left: 2.034284e-02	ci right 2.322717e-02	k: 870	n:40000
Cons ci ratio: 1.580264e-01	ci left: 1.395173e-02	ci right 1.636941e-02	k: 605	n:40000
KS ci ratio: 6.446171e-02	ci left: 8.189058e-02	ci right 8.736990e-02	k: 3384	n:40000
ZMYM5   40000 perm   9 sec   (4518 perm/sec)   p_kst 8.460000e-02   p_cons 1.512500e-02   p_joint 2.175000e-02

Joint ci ratio: 1.053581e-01	ci left: 2.551887e-02	ci right 2.837641e-02	k: 1346	n:50000
Cons ci ratio: 1.406381e-01	ci left: 1.422303e-02	ci right 1.639377e-02	k: 764	n:50000
KS ci ratio: 5.777023e-02	ci left: 8.187888e-02	ci right 8.676951e-02	k: 4215	n:50000
ZMYM5   50000 perm   11 sec   (4400 perm/sec)   p_kst 8.430000e-02   p_cons 1.528000e-02   p_joint 2.692000e-02

Joint ci ratio: 1.086955e-01	ci left: 2.006225e-02	ci right 2.238439e-02	k: 1272	n:60000
Cons ci ratio: 1.264404e-01	ci left: 1.476890e-02	ci right 1.677834e-02	k: 945	n:60000
KS ci ratio: 5.276075e-02	ci left: 8.202282e-02	ci right 8.648415e-02	k: 5054	n:60000
ZMYM5   60000 perm   14 sec   (4296 perm/sec)   p_kst 8.423333e-02   p_cons 1.575000e-02   p_joint 2.120000e-02

Joint ci ratio: 1.074119e-01	ci left: 1.766761e-02	ci right 1.968685e-02	k: 1306	n:70000
Cons ci ratio: 1.158235e-01	ci left: 1.516671e-02	ci right 1.704514e-02	k: 1126	n:70000
KS ci ratio: 4.872756e-02	ci left: 8.256270e-02	ci right 8.670038e-02	k: 5923	n:70000
ZMYM5   70000 perm   17 sec   (4206 perm/sec)   p_kst 8.461429e-02   p_cons 1.608571e-02   p_joint 1.865714e-02

Joint ci ratio: 7.957925e-02	ci left: 2.826479e-02	ci right 3.061950e-02	k: 2354	n:80000
Cons ci ratio: 1.083430e-01	ci left: 1.522701e-02	ci right 1.698333e-02	k: 1287	n:80000
KS ci ratio: 4.473150e-02	ci left: 8.562492e-02	ci right 8.955505e-02	k: 7006	n:80000
ZMYM5   80000 perm   19 sec   (4116 perm/sec)   p_kst 8.757500e-02   p_cons 1.608750e-02   p_joint 2.942500e-02

Joint ci ratio: 7.332560e-02	ci left: 2.964807e-02	ci right 3.191564e-02	k: 2769	n:90000
Cons ci ratio: 1.027977e-01	ci left: 1.508201e-02	ci right 1.672718e-02	k: 1430	n:90000
KS ci ratio: 4.214655e-02	ci left: 8.583777e-02	ci right 8.954441e-02	k: 7891	n:90000
ZMYM5   90000 perm   22 sec   (4037 perm/sec)   p_kst 8.767778e-02   p_cons 1.588889e-02   p_joint 3.076667e-02

Joint ci ratio: 6.703975e-02	ci left: 3.195057e-02	ci right 3.417662e-02	k: 3305	n:100000
Cons ci ratio: 9.681344e-02	ci left: 1.534851e-02	ci right 1.691974e-02	k: 1612	n:100000
KS ci ratio: 4.000097e-02	ci left: 8.586465e-02	ci right 8.937931e-02	k: 8761	n:100000
ZMYM5   100000 perm   25 sec   (3967 perm/sec)   p_kst 8.761000e-02   p_cons 1.612000e-02   p_joint 3.305000e-02

Outputting figure to mutsig2_images.part000000000194/ZMYM5.4_2145_100000_0.08761_0.01612_0.03305.png
                gene_name: ZMYM5
               theta_stop: 0.097 
                    nperm: 100000 
                     p_ks: 0.088 
        ci_ks_bounds_left: 0.086 
       ci_ks_bounds_right: 0.089 
                   p_cons: 0.016 
      ci_cons_bounds_left: 0.015 
     ci_cons_bounds_right: 0.017 
                  p_joint: 0.033 
     ci_joint_bounds_left: 0.032 
    ci_joint_bounds_right: 0.034 

Current progress: 53 percent done.
ZMYM6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.866427e-02	ci left: 2.372873e-01	ci right 2.542610e-01	k: 2457	n:10000
Cons ci ratio: 4.980742e-02	ci left: 3.728605e-01	ci right 3.920080e-01	k: 3824	n:10000
KS ci ratio: 1.022656e-01	ci left: 1.215110e-01	ci right 1.347065e-01	k: 1280	n:10000
ZMYM6   10000 perm   2 sec   (4713 perm/sec)   p_kst 1.280000e-01   p_cons 3.824000e-01   p_joint 2.457000e-01

Joint ci ratio: 5.421917e-02	ci left: 2.015513e-01	ci right 2.128339e-01	k: 4143	n:20000
Cons ci ratio: 3.578472e-02	ci left: 3.682343e-01	ci right 3.817021e-01	k: 7499	n:20000
KS ci ratio: 7.372326e-02	ci left: 1.192654e-01	ci right 1.284443e-01	k: 2476	n:20000
ZMYM6   20000 perm   5 sec   (4278 perm/sec)   p_kst 1.238000e-01   p_cons 3.749500e-01   p_joint 2.071500e-01

Outputting figure to mutsig2_images.part000000000194/ZMYM6.4_4038_20000_0.1238_0.37495_0.20715.png
                gene_name: ZMYM6
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 54 percent done.
ZDHHC9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.145409e-02	ci left: 9.159518e-01	ci right 9.266012e-01	k: 9214	n:10000
Cons ci ratio: 5.022109e-02	ci left: 3.689804e-01	ci right 3.880904e-01	k: 3785	n:10000
KS ci ratio: 2.976194e-02	ci left: 6.247723e-01	ci right 6.437494e-01	k: 6343	n:10000
ZDHHC9   10000 perm   2 sec   (6508 perm/sec)   p_kst 6.343000e-01   p_cons 3.785000e-01   p_joint 9.214000e-01

Outputting figure to mutsig2_images.part000000000194/ZDHHC9.3_1131_10000_0.6343_0.3785_0.9214.png
                gene_name: ZDHHC9
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 56 percent done.
ZFAND6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.743326e-02	ci left: 3.085789e-01	ci right 3.269274e-01	k: 3177	n:10000
Cons ci ratio: 3.388375e-02	ci left: 5.625333e-01	ci right 5.820246e-01	k: 5723	n:10000
KS ci ratio: 7.949257e-02	ci left: 1.877666e-01	ci right 2.034111e-01	k: 1955	n:10000
ZFAND6   10000 perm   1 sec   (6868 perm/sec)   p_kst 1.955000e-01   p_cons 5.723000e-01   p_joint 3.177000e-01

Outputting figure to mutsig2_images.part000000000194/ZFAND6.3_647_10000_0.1955_0.5723_0.3177.png
                gene_name: ZFAND6
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 58 percent done.
ZFAT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.226381e-02	ci left: 5.864060e-01	ci right 6.057380e-01	k: 5961	n:10000
Cons ci ratio: 7.170281e-02	ci left: 2.217814e-01	ci right 2.383761e-01	k: 2300	n:10000
KS ci ratio: 1.139078e-02	ci left: 9.167762e-01	ci right 9.273764e-01	k: 9222	n:10000
ZFAT   10000 perm   2 sec   (5360 perm/sec)   p_kst 9.222000e-01   p_cons 2.300000e-01   p_joint 5.961000e-01

Outputting figure to mutsig2_images.part000000000194/ZFAT.3_3796_10000_0.9222_0.23_0.5961.png
                gene_name: ZFAT
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 59 percent done.
ZFP112
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.547181e-02	ci left: 6.940369e-01	ci right 7.120447e-01	k: 7031	n:10000
KS ci ratio: 5.125049e-02	ci left: 3.595318e-01	ci right 3.785446e-01	k: 3690	n:10000
ZFP112   10000 perm   2 sec   (5533 perm/sec)   p_kst 3.690000e-01   p_cons 7.031000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000194/ZFP112.3_2758_10000_0.369_0.7031_1.png
                gene_name: ZFP112
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 61 percent done.
ZFP30
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.664246e-03	ci left: 9.491889e-01	ci right 9.575444e-01	k: 9535	n:10000
KS ci ratio: 1.507522e-02	ci left: 8.644763e-01	ci right 8.777067e-01	k: 8712	n:10000
ZFP30   10000 perm   2 sec   (6202 perm/sec)   p_kst 8.712000e-01   p_cons 9.535000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000194/ZFP30.3_1576_10000_0.8712_0.9535_1.png
                gene_name: ZFP30
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 63 percent done.
ZFP36L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.257205e-01	ci left: 8.300372e-02	ci right 9.423727e-02	k: 885	n:10000
Cons ci ratio: 3.321031e-02	ci left: 5.723604e-01	ci right 5.917917e-01	k: 5821	n:10000
KS ci ratio: 1.886187e-01	ci left: 3.748413e-02	ci right 4.538584e-02	k: 413	n:10000
ZFP36L1   10000 perm   2 sec   (6307 perm/sec)   p_kst 4.130000e-02   p_cons 5.821000e-01   p_joint 8.850000e-02

Joint ci ratio: 8.015886e-02	ci left: 1.025028e-01	ci right 1.111119e-01	k: 2135	n:20000
Cons ci ratio: 2.346530e-02	ci left: 5.756289e-01	ci right 5.893471e-01	k: 11650	n:20000
KS ci ratio: 1.326265e-01	ci left: 3.906816e-02	ci right 4.466603e-02	k: 836	n:20000
ZFP36L1   20000 perm   4 sec   (5606 perm/sec)   p_kst 4.180000e-02   p_cons 5.825000e-01   p_joint 1.067500e-01

Joint ci ratio: 8.062892e-02	ci left: 7.008112e-02	ci right 7.600189e-02	k: 2190	n:30000
Cons ci ratio: 1.918335e-02	ci left: 5.762941e-01	ci right 5.874900e-01	k: 17457	n:30000
KS ci ratio: 1.105850e-01	ci left: 3.797276e-02	ci right 4.245017e-02	k: 1205	n:30000
ZFP36L1   30000 perm   6 sec   (5327 perm/sec)   p_kst 4.016667e-02   p_cons 5.819000e-01   p_joint 7.300000e-02

Joint ci ratio: 7.882612e-02	ci left: 5.592529e-02	ci right 6.053911e-02	k: 2328	n:40000
Cons ci ratio: 1.659040e-02	ci left: 5.777240e-01	ci right 5.874140e-01	k: 23303	n:40000
KS ci ratio: 9.546093e-02	ci left: 3.851581e-02	ci right 4.240126e-02	k: 1617	n:40000
ZFP36L1   40000 perm   8 sec   (5132 perm/sec)   p_kst 4.042500e-02   p_cons 5.825750e-01   p_joint 5.820000e-02

Outputting figure to mutsig2_images.part000000000194/ZFP36L1.3_1025_40000_0.040425_0.58257_0.0582.png
                gene_name: ZFP36L1
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.040 
        ci_ks_bounds_left: 0.039 
       ci_ks_bounds_right: 0.042 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.058 
     ci_joint_bounds_left: 0.056 
    ci_joint_bounds_right: 0.061 

Current progress: 64 percent done.
ZFP90
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.157215e-02	ci left: 9.144065e-01	ci right 9.251474e-01	k: 9199	n:10000
KS ci ratio: 2.647003e-02	ci left: 6.776064e-01	ci right 6.958847e-01	k: 6868	n:10000
ZFP90   10000 perm   2 sec   (6050 perm/sec)   p_kst 6.868000e-01   p_cons 9.199000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000194/ZFP90.3_1927_10000_0.6868_0.9199_1.png
                gene_name: ZFP90
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 66 percent done.
ZFP91
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.818054e-02	ci left: 5.032509e-01	ci right 5.229414e-01	k: 5131	n:10000
Cons ci ratio: 4.044451e-02	ci left: 4.744608e-01	ci right 4.941484e-01	k: 4843	n:10000
KS ci ratio: 4.033941e-02	ci left: 4.757596e-01	ci right 4.954488e-01	k: 4856	n:10000
ZFP91   10000 perm   2 sec   (5933 perm/sec)   p_kst 4.856000e-01   p_cons 4.843000e-01   p_joint 5.131000e-01

Outputting figure to mutsig2_images.part000000000194/ZFP91.3_1757_10000_0.4856_0.4843_0.5131.png
                gene_name: ZFP91
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 68 percent done.
ZFR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.899873e-02	ci left: 8.019682e-01	ci right 8.174510e-01	k: 8098	n:10000
Cons ci ratio: 3.017375e-02	ci left: 6.183401e-01	ci right 6.373854e-01	k: 6279	n:10000
KS ci ratio: 3.967515e-02	ci left: 4.840539e-01	ci right 5.037497e-01	k: 4939	n:10000
ZFR2   10000 perm   2 sec   (5115 perm/sec)   p_kst 4.939000e-01   p_cons 6.279000e-01   p_joint 8.098000e-01

Outputting figure to mutsig2_images.part000000000194/ZFR2.3_3060_10000_0.4939_0.6279_0.8098.png
                gene_name: ZFR2
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 69 percent done.
ZFYVE16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.580158e-02	ci left: 6.885921e-01	ci right 7.066926e-01	k: 6977	n:10000
KS ci ratio: 2.602805e-02	ci left: 6.848624e-01	ci right 7.030245e-01	k: 6940	n:10000
ZFYVE16   10000 perm   2 sec   (4645 perm/sec)   p_kst 6.940000e-01   p_cons 6.977000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000194/ZFYVE16.3_4688_10000_0.694_0.6977_1.png
                gene_name: ZFYVE16
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
ZFYVE20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.204988e-02	ci left: 5.896176e-01	ci right 6.089245e-01	k: 5993	n:10000
KS ci ratio: 2.893336e-02	ci left: 6.378433e-01	ci right 6.566709e-01	k: 6473	n:10000
ZFYVE20   10000 perm   2 sec   (5722 perm/sec)   p_kst 6.473000e-01   p_cons 5.993000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000194/ZFYVE20.3_2399_10000_0.6473_0.5993_1.png
                gene_name: ZFYVE20
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
ZGPAT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.113784e-01	ci left: 1.317075e-02	ci right 1.811726e-02	k: 155	n:10000
Cons ci ratio: 2.022577e-01	ci left: 3.252956e-02	ci right 3.994377e-02	k: 361	n:10000
KS ci ratio: 2.162892e-01	ci left: 2.835310e-02	ci right 3.532314e-02	k: 317	n:10000
ZGPAT   10000 perm   2 sec   (5569 perm/sec)   p_kst 3.170000e-02   p_cons 3.610000e-02   p_joint 1.550000e-02

Joint ci ratio: 2.173693e-01	ci left: 1.425935e-02	ci right 1.778339e-02	k: 319	n:20000
Cons ci ratio: 1.465217e-01	ci left: 3.201345e-02	ci right 3.712302e-02	k: 690	n:20000
KS ci ratio: 1.547106e-01	ci left: 2.868948e-02	ci right 3.354810e-02	k: 621	n:20000
ZGPAT   20000 perm   4 sec   (5098 perm/sec)   p_kst 3.105000e-02   p_cons 3.450000e-02   p_joint 1.595000e-02

Joint ci ratio: 2.735157e-01	ci left: 5.870334e-03	ci right 7.760411e-03	k: 203	n:30000
Cons ci ratio: 1.175088e-01	ci left: 3.366123e-02	ci right 3.789596e-02	k: 1072	n:30000
KS ci ratio: 1.257663e-01	ci left: 2.939074e-02	ci right 3.336736e-02	k: 940	n:30000
ZGPAT   30000 perm   6 sec   (4904 perm/sec)   p_kst 3.133333e-02   p_cons 3.573333e-02   p_joint 6.766667e-03

Joint ci ratio: 2.538728e-01	ci left: 5.173036e-03	ci right 6.700031e-03	k: 236	n:40000
Cons ci ratio: 9.861587e-02	ci left: 3.612301e-02	ci right 3.989444e-02	k: 1519	n:40000
KS ci ratio: 1.080169e-01	ci left: 3.015070e-02	ci right 3.361770e-02	k: 1274	n:40000
ZGPAT   40000 perm   8 sec   (4778 perm/sec)   p_kst 3.185000e-02   p_cons 3.797500e-02   p_joint 5.900000e-03

Joint ci ratio: 1.535910e-01	ci left: 1.187154e-02	ci right 1.386561e-02	k: 642	n:50000
Cons ci ratio: 8.830158e-02	ci left: 3.624312e-02	ci right 3.961080e-02	k: 1895	n:50000
KS ci ratio: 9.657435e-02	ci left: 3.035735e-02	ci right 3.345731e-02	k: 1594	n:50000
ZGPAT   50000 perm   11 sec   (4633 perm/sec)   p_kst 3.188000e-02   p_cons 3.790000e-02   p_joint 1.284000e-02

Joint ci ratio: 1.255667e-01	ci left: 1.497883e-02	ci right 1.700171e-02	k: 958	n:60000
Cons ci ratio: 8.085217e-02	ci left: 3.617367e-02	ci right 3.923792e-02	k: 2261	n:60000
KS ci ratio: 8.859127e-02	ci left: 3.019832e-02	ci right 3.301389e-02	k: 1895	n:60000
ZGPAT   60000 perm   13 sec   (4523 perm/sec)   p_kst 3.158333e-02   p_cons 3.768333e-02   p_joint 1.596667e-02

Joint ci ratio: 1.276147e-01	ci left: 1.245061e-02	ci right 1.416151e-02	k: 930	n:70000
Cons ci ratio: 7.481047e-02	ci left: 3.632911e-02	ci right 3.916651e-02	k: 2641	n:70000
KS ci ratio: 8.211555e-02	ci left: 3.023240e-02	ci right 3.283520e-02	k: 2206	n:70000
ZGPAT   70000 perm   16 sec   (4432 perm/sec)   p_kst 3.151429e-02   p_cons 3.772857e-02   p_joint 1.328571e-02

Joint ci ratio: 1.348650e-01	ci left: 9.744804e-03	ci right 1.116603e-02	k: 835	n:80000
Cons ci ratio: 6.993587e-02	ci left: 3.646441e-02	ci right 3.911924e-02	k: 3022	n:80000
KS ci ratio: 7.695852e-02	ci left: 3.020228e-02	ci right 3.263185e-02	k: 2512	n:80000
ZGPAT   80000 perm   18 sec   (4344 perm/sec)   p_kst 3.140000e-02   p_cons 3.777500e-02   p_joint 1.043750e-02

Joint ci ratio: 1.346195e-01	ci left: 8.704676e-03	ci right 9.971696e-03	k: 839	n:90000
Cons ci ratio: 6.582440e-02	ci left: 3.666181e-02	ci right 3.916809e-02	k: 3411	n:90000
KS ci ratio: 7.271839e-02	ci left: 3.013921e-02	ci right 3.242446e-02	k: 2814	n:90000
ZGPAT   90000 perm   21 sec   (4261 perm/sec)   p_kst 3.126667e-02   p_cons 3.790000e-02   p_joint 9.322222e-03

Joint ci ratio: 1.334075e-01	ci left: 7.988644e-03	ci right 9.140133e-03	k: 855	n:100000
Cons ci ratio: 6.238765e-02	ci left: 3.679384e-02	ci right 3.917305e-02	k: 3797	n:100000
KS ci ratio: 6.885934e-02	ci left: 3.030804e-02	ci right 3.247925e-02	k: 3138	n:100000
ZGPAT   100000 perm   24 sec   (4182 perm/sec)   p_kst 3.138000e-02   p_cons 3.797000e-02   p_joint 8.550000e-03

Joint ci ratio: 1.123049e-01	ci left: 1.033897e-02	ci right 1.157793e-02	k: 1204	n:110000
Cons ci ratio: 6.189442e-02	ci left: 3.409182e-02	ci right 3.627823e-02	k: 3869	n:110000
KS ci ratio: 6.600994e-02	ci left: 3.003728e-02	ci right 3.209663e-02	k: 3416	n:110000
ZGPAT   110000 perm   27 sec   (4105 perm/sec)   p_kst 3.105455e-02   p_cons 3.517273e-02   p_joint 1.094545e-02

Joint ci ratio: 1.402635e-01	ci left: 6.012905e-03	ci right 6.927858e-03	k: 775	n:120000
Cons ci ratio: 5.907705e-02	ci left: 3.434512e-02	ci right 3.644407e-02	k: 4246	n:120000
KS ci ratio: 6.327542e-02	ci left: 3.001015e-02	ci right 3.197927e-02	k: 3718	n:120000
ZGPAT   120000 perm   30 sec   (4025 perm/sec)   p_kst 3.098333e-02   p_cons 3.538333e-02   p_joint 6.458333e-03

Joint ci ratio: 1.403897e-01	ci left: 5.542856e-03	ci right 6.387102e-03	k: 774	n:130000
Cons ci ratio: 5.441705e-02	ci left: 3.733911e-02	ci right 3.943539e-02	k: 4989	n:130000
KS ci ratio: 6.094872e-02	ci left: 2.989774e-02	ci right 3.178480e-02	k: 4008	n:130000
ZGPAT   130000 perm   33 sec   (3955 perm/sec)   p_kst 3.083077e-02   p_cons 3.837692e-02   p_joint 5.953846e-03

Joint ci ratio: 1.380225e-01	ci left: 5.333038e-03	ci right 6.130500e-03	k: 801	n:140000
Cons ci ratio: 5.229026e-02	ci left: 3.758280e-02	ci right 3.960780e-02	k: 5402	n:140000
KS ci ratio: 5.874139e-02	ci left: 2.992224e-02	ci right 3.174011e-02	k: 4315	n:140000
ZGPAT   140000 perm   36 sec   (3888 perm/sec)   p_kst 3.082143e-02   p_cons 3.858571e-02   p_joint 5.721429e-03

Joint ci ratio: 1.334429e-01	ci left: 5.338160e-03	ci right 6.107802e-03	k: 857	n:150000
Cons ci ratio: 5.059420e-02	ci left: 3.750559e-02	ci right 3.945897e-02	k: 5771	n:150000
KS ci ratio: 5.653102e-02	ci left: 3.018125e-02	ci right 3.194360e-02	k: 4658	n:150000
ZGPAT   150000 perm   39 sec   (3823 perm/sec)   p_kst 3.105333e-02   p_cons 3.847333e-02   p_joint 5.713333e-03

Joint ci ratio: 1.387696e-01	ci left: 4.618020e-03	ci right 5.312605e-03	k: 793	n:160000
Cons ci ratio: 4.898267e-02	ci left: 3.754397e-02	ci right 3.943530e-02	k: 6157	n:160000
KS ci ratio: 5.464861e-02	ci left: 3.030415e-02	ci right 3.201289e-02	k: 4984	n:160000
ZGPAT   160000 perm   43 sec   (3763 perm/sec)   p_kst 3.115000e-02   p_cons 3.848125e-02   p_joint 4.956250e-03

Joint ci ratio: 1.126657e-01	ci left: 6.672053e-03	ci right 7.474307e-03	k: 1201	n:170000
Cons ci ratio: 4.750460e-02	ci left: 3.759616e-02	ci right 3.943139e-02	k: 6546	n:170000
KS ci ratio: 5.292195e-02	ci left: 3.043668e-02	ci right 3.209701e-02	k: 5314	n:170000
ZGPAT   170000 perm   46 sec   (3702 perm/sec)   p_kst 3.125882e-02   p_cons 3.850588e-02   p_joint 7.064706e-03

Joint ci ratio: 8.731996e-02	ci left: 1.058849e-02	ci right 1.156069e-02	k: 1992	n:180000
Cons ci ratio: 4.603552e-02	ci left: 3.783010e-02	ci right 3.961813e-02	k: 6969	n:180000
KS ci ratio: 5.133984e-02	ci left: 3.056620e-02	ci right 3.218227e-02	k: 5646	n:180000
ZGPAT   180000 perm   49 sec   (3642 perm/sec)   p_kst 3.136667e-02   p_cons 3.871667e-02   p_joint 1.106667e-02

Outputting figure to mutsig2_images.part000000000194/ZGPAT.3_1620_180000_0.031367_0.038717_0.011067.png
                gene_name: ZGPAT
               theta_stop: 0.087 
                    nperm: 180000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.031 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.039 
      ci_cons_bounds_left: 0.038 
     ci_cons_bounds_right: 0.040 
                  p_joint: 0.011 
     ci_joint_bounds_left: 0.011 
    ci_joint_bounds_right: 0.012 

Current progress: 75 percent done.
ZIK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.597904e-02	ci left: 6.856687e-01	ci right 7.038177e-01	k: 6948	n:10000
KS ci ratio: 1.009287e-02	ci left: 9.329910e-01	ci right 9.425521e-01	k: 9379	n:10000
ZIK1   10000 perm   2 sec   (6320 perm/sec)   p_kst 9.379000e-01   p_cons 6.948000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000194/ZIK1.3_1480_10000_0.9379_0.6948_1.png
                gene_name: ZIK1
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
ZKSCAN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.043253e-02	ci left: 6.143208e-01	ci right 6.334069e-01	k: 6239	n:10000
Cons ci ratio: 1.532928e-02	ci left: 8.605959e-01	ci right 8.739894e-01	k: 8674	n:10000
KS ci ratio: 4.802080e-02	ci left: 3.901793e-01	ci right 4.094791e-01	k: 3998	n:10000
ZKSCAN4   10000 perm   2 sec   (6211 perm/sec)   p_kst 3.998000e-01   p_cons 8.674000e-01   p_joint 6.239000e-01

Outputting figure to mutsig2_images.part000000000194/ZKSCAN4.3_1658_10000_0.3998_0.8674_0.6239.png
                gene_name: ZKSCAN4
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 78 percent done.
ZMAT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.194986e-02	ci left: 7.528195e-01	ci right 7.696281e-01	k: 7613	n:10000
Cons ci ratio: 3.231072e-02	ci left: 5.857036e-01	ci right 6.050408e-01	k: 5954	n:10000
KS ci ratio: 8.761311e-03	ci left: 9.481473e-01	ci right 9.565866e-01	k: 9525	n:10000
ZMAT1   10000 perm   2 sec   (5664 perm/sec)   p_kst 9.525000e-01   p_cons 5.954000e-01   p_joint 7.613000e-01

Outputting figure to mutsig2_images.part000000000194/ZMAT1.3_1941_10000_0.9525_0.5954_0.7613.png
                gene_name: ZMAT1
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 80 percent done.
ZMYM4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.077787e-02	ci left: 4.703648e-01	ci right 4.900467e-01	k: 4802	n:10000
KS ci ratio: 2.249299e-02	ci left: 7.437166e-01	ci right 7.607363e-01	k: 7523	n:10000
ZMYM4   10000 perm   2 sec   (4548 perm/sec)   p_kst 7.523000e-01   p_cons 4.802000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000194/ZMYM4.3_4767_10000_0.7523_0.4802_1.png
                gene_name: ZMYM4
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
ZMYND12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.257462e-02	ci left: 3.478011e-01	ci right 3.666822e-01	k: 3572	n:10000
Cons ci ratio: 1.716091e-02	ci left: 8.318516e-01	ci right 8.463503e-01	k: 8392	n:10000
KS ci ratio: 1.046204e-01	ci left: 1.166232e-01	ci right 1.295972e-01	k: 1230	n:10000
ZMYND12   10000 perm   2 sec   (6569 perm/sec)   p_kst 1.230000e-01   p_cons 8.392000e-01   p_joint 3.572000e-01

Joint ci ratio: 3.092776e-02	ci left: 4.384953e-01	ci right 4.523206e-01	k: 8908	n:20000
Cons ci ratio: 1.208000e-02	ci left: 8.352499e-01	ci right 8.454509e-01	k: 16808	n:20000
KS ci ratio: 7.262314e-02	ci left: 1.225132e-01	ci right 1.317955e-01	k: 2542	n:20000
ZMYND12   20000 perm   3 sec   (5731 perm/sec)   p_kst 1.271000e-01   p_cons 8.404000e-01   p_joint 4.454000e-01

Outputting figure to mutsig2_images.part000000000194/ZMYND12.3_1130_20000_0.1271_0.8404_0.4454.png
                gene_name: ZMYND12
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.45 

Current progress: 83 percent done.
ZMYND15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.310302e-02	ci left: 4.428093e-01	ci right 4.624183e-01	k: 4526	n:10000
Cons ci ratio: 9.703224e-02	ci left: 1.334506e-01	ci right 1.471597e-01	k: 1402	n:10000
KS ci ratio: 3.782306e-02	ci left: 5.079524e-01	ci right 5.276372e-01	k: 5178	n:10000
ZMYND15   10000 perm   2 sec   (5781 perm/sec)   p_kst 5.178000e-01   p_cons 1.402000e-01   p_joint 4.526000e-01

Outputting figure to mutsig2_images.part000000000194/ZMYND15.3_2281_10000_0.5178_0.1402_0.4526.png
                gene_name: ZMYND15
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 85 percent done.
ZFAND1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.580770e-02	ci left: 6.884913e-01	ci right 7.065935e-01	k: 6976	n:10000
Cons ci ratio: 4.848410e-02	ci left: 3.855995e-01	ci right 4.048615e-01	k: 3952	n:10000
KS ci ratio: 2.967221e-02	ci left: 6.261796e-01	ci right 6.451413e-01	k: 6357	n:10000
ZFAND1   10000 perm   1 sec   (6983 perm/sec)   p_kst 6.357000e-01   p_cons 3.952000e-01   p_joint 6.976000e-01

Outputting figure to mutsig2_images.part000000000194/ZFAND1.2_887_10000_0.6357_0.3952_0.6976.png
                gene_name: ZFAND1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 86 percent done.
ZFP161
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.635105e-03	ci left: 9.383791e-01	ci right 9.475607e-01	k: 9431	n:10000
Cons ci ratio: 1.305483e-01	ci left: 7.727681e-02	ci right 8.816773e-02	k: 826	n:10000
KS ci ratio: 1.930639e-02	ci left: 7.968933e-01	ci right 8.125288e-01	k: 8048	n:10000
ZFP161   10000 perm   1 sec   (6953 perm/sec)   p_kst 8.048000e-01   p_cons 8.260000e-02   p_joint 9.431000e-01

Joint ci ratio: 1.112411e-02	ci left: 8.564323e-01	ci right 8.660624e-01	k: 17226	n:20000
Cons ci ratio: 9.001893e-02	ci left: 8.268849e-02	ci right 9.053218e-02	k: 1731	n:20000
KS ci ratio: 1.375772e-02	ci left: 7.967622e-01	ci right 8.078498e-01	k: 16047	n:20000
ZFP161   20000 perm   3 sec   (6034 perm/sec)   p_kst 8.023500e-01   p_cons 8.655000e-02   p_joint 8.613000e-01

Outputting figure to mutsig2_images.part000000000194/ZFP161.2_1358_20000_0.80235_0.08655_0.8613.png
                gene_name: ZFP161
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.087 
      ci_cons_bounds_left: 0.083 
     ci_cons_bounds_right: 0.091 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 88 percent done.
ZFY
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.009630e-03	ci left: 9.655188e-01	ci right 9.724045e-01	k: 9691	n:10000
Cons ci ratio: 1.299784e-02	ci left: 8.949790e-01	ci right 9.067863e-01	k: 9010	n:10000
KS ci ratio: 5.588080e-02	ci left: 3.204868e-01	ci right 3.390125e-01	k: 3297	n:10000
ZFY   10000 perm   2 sec   (5779 perm/sec)   p_kst 3.297000e-01   p_cons 9.010000e-01   p_joint 9.691000e-01

Outputting figure to mutsig2_images.part000000000194/ZFY.2_2434_10000_0.3297_0.901_0.9691.png
                gene_name: ZFY
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.97 

Current progress: 90 percent done.
ZFYVE28
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.401693e-02	ci left: 2.638896e-01	ci right 2.814430e-01	k: 2726	n:10000
Cons ci ratio: 7.419881e-02	ci left: 2.100392e-01	ci right 2.263253e-01	k: 2181	n:10000
KS ci ratio: 8.673992e-03	ci left: 9.490847e-01	ci right 9.574486e-01	k: 9534	n:10000
ZFYVE28   10000 perm   2 sec   (5638 perm/sec)   p_kst 9.534000e-01   p_cons 2.181000e-01   p_joint 2.726000e-01

Outputting figure to mutsig2_images.part000000000194/ZFYVE28.2_2936_10000_0.9534_0.2181_0.2726.png
                gene_name: ZFYVE28
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 92 percent done.
ZKSCAN5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.072783e-02	ci left: 7.732695e-01	ci right 7.895662e-01	k: 7815	n:10000
Cons ci ratio: 2.217922e-02	ci left: 7.489754e-01	ci right 7.658744e-01	k: 7575	n:10000
KS ci ratio: 5.364460e-02	ci left: 3.386594e-01	ci right 3.574292e-01	k: 3480	n:10000
ZKSCAN5   10000 perm   2 sec   (5617 perm/sec)   p_kst 3.480000e-01   p_cons 7.575000e-01   p_joint 7.815000e-01

Outputting figure to mutsig2_images.part000000000194/ZKSCAN5.2_2544_10000_0.348_0.7575_0.7815.png
                gene_name: ZKSCAN5
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 93 percent done.
ZMAT4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.045149e-02	ci left: 9.286459e-01	ci right 9.384997e-01	k: 9337	n:10000
Cons ci ratio: 3.899088e-02	ci left: 4.927508e-01	ci right 5.124477e-01	k: 5026	n:10000
KS ci ratio: 2.090974e-02	ci left: 7.702306e-01	ci right 7.866069e-01	k: 7785	n:10000
ZMAT4   10000 perm   1 sec   (7128 perm/sec)   p_kst 7.785000e-01   p_cons 5.026000e-01   p_joint 9.337000e-01

Outputting figure to mutsig2_images.part000000000194/ZMAT4.2_714_10000_0.7785_0.5026_0.9337.png
                gene_name: ZMAT4
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 95 percent done.
ZMIZ2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.202320e-02	ci left: 5.900191e-01	ci right 6.093228e-01	k: 5997	n:10000
KS ci ratio: 1.860936e-02	ci left: 8.083654e-01	ci right 8.236501e-01	k: 8161	n:10000
ZMIZ2   10000 perm   2 sec   (5840 perm/sec)   p_kst 8.161000e-01   p_cons 5.997000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000194/ZMIZ2.2_2835_10000_0.8161_0.5997_1.png
                gene_name: ZMIZ2
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
ZMPSTE24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.248719e-01	ci left: 8.407230e-02	ci right 9.536803e-02	k: 896	n:10000
Cons ci ratio: 4.753709e-03	ci left: 9.830684e-01	ci right 9.878427e-01	k: 9856	n:10000
KS ci ratio: 5.003467e-01	ci left: 4.581663e-03	ci right 7.716529e-03	k: 60	n:10000
ZMPSTE24   10000 perm   1 sec   (6824 perm/sec)   p_kst 6.000000e-03   p_cons 9.856000e-01   p_joint 8.960000e-02

Joint ci ratio: 6.865601e-02	ci left: 1.353172e-01	ci right 1.449877e-01	k: 2802	n:20000
Cons ci ratio: 3.272460e-03	ci left: 9.845914e-01	ci right 9.878650e-01	k: 19726	n:20000
KS ci ratio: 3.495094e-01	ci left: 5.159405e-03	ci right 7.387804e-03	k: 124	n:20000
ZMPSTE24   20000 perm   3 sec   (5942 perm/sec)   p_kst 6.200000e-03   p_cons 9.863000e-01   p_joint 1.401000e-01

Joint ci ratio: 5.911504e-02	ci left: 1.240415e-01	ci right 1.316307e-01	k: 3834	n:30000
Cons ci ratio: 2.676986e-03	ci left: 9.848500e-01	ci right 9.875213e-01	k: 29587	n:30000
KS ci ratio: 2.776569e-01	ci left: 5.684079e-03	ci right 7.546739e-03	k: 197	n:30000
ZMPSTE24   30000 perm   5 sec   (5614 perm/sec)   p_kst 6.566667e-03   p_cons 9.862333e-01   p_joint 1.278000e-01

Joint ci ratio: 5.111699e-02	ci left: 1.248889e-01	ci right 1.314652e-01	k: 5126	n:40000
Cons ci ratio: 2.311990e-03	ci left: 9.851124e-01	ci right 9.874162e-01	k: 39452	n:40000
KS ci ratio: 2.437331e-01	ci left: 5.642032e-03	ci right 7.230899e-03	k: 256	n:40000
ZMPSTE24   40000 perm   7 sec   (5343 perm/sec)   p_kst 6.400000e-03   p_cons 9.863000e-01   p_joint 1.281500e-01

Joint ci ratio: 4.549987e-02	ci left: 1.263112e-01	ci right 1.322120e-01	k: 6462	n:50000
Cons ci ratio: 2.087324e-03	ci left: 9.849729e-01	ci right 9.870501e-01	k: 49302	n:50000
KS ci ratio: 2.191204e-01	ci left: 5.663077e-03	ci right 7.075155e-03	k: 317	n:50000
ZMPSTE24   50000 perm   10 sec   (5162 perm/sec)   p_kst 6.340000e-03   p_cons 9.860400e-01   p_joint 1.292400e-01

Joint ci ratio: 4.140262e-02	ci left: 1.272856e-01	ci right 1.326835e-01	k: 7798	n:60000
Cons ci ratio: 1.911455e-03	ci left: 9.849760e-01	ci right 9.868765e-01	k: 59157	n:60000
KS ci ratio: 1.986195e-01	ci left: 5.809248e-03	ci right 7.105852e-03	k: 386	n:60000
ZMPSTE24   60000 perm   12 sec   (5023 perm/sec)   p_kst 6.433333e-03   p_cons 9.859500e-01   p_joint 1.299667e-01

Joint ci ratio: 3.850386e-02	ci left: 1.264826e-01	ci right 1.314625e-01	k: 9027	n:70000
Cons ci ratio: 1.789920e-03	ci left: 9.847193e-01	ci right 9.864972e-01	k: 68994	n:70000
KS ci ratio: 1.844007e-01	ci left: 5.822654e-03	ci right 7.018814e-03	k: 448	n:70000
ZMPSTE24   70000 perm   14 sec   (4902 perm/sec)   p_kst 6.400000e-03   p_cons 9.856286e-01   p_joint 1.289571e-01

Joint ci ratio: 3.604058e-02	ci left: 1.264984e-01	ci right 1.311536e-01	k: 10305	n:80000
Cons ci ratio: 1.665552e-03	ci left: 9.849303e-01	ci right 9.865842e-01	k: 78862	n:80000
KS ci ratio: 1.718424e-01	ci left: 5.906984e-03	ci right 7.029259e-03	k: 516	n:80000
ZMPSTE24   80000 perm   17 sec   (4784 perm/sec)   p_kst 6.450000e-03   p_cons 9.857750e-01   p_joint 1.288125e-01

Joint ci ratio: 3.402363e-02	ci left: 1.263422e-01	ci right 1.307262e-01	k: 11567	n:90000
Cons ci ratio: 1.575655e-03	ci left: 9.848801e-01	ci right 9.864439e-01	k: 88711	n:90000
KS ci ratio: 1.626669e-01	ci left: 5.889423e-03	ci right 6.942771e-03	k: 576	n:90000
ZMPSTE24   90000 perm   19 sec   (4685 perm/sec)   p_kst 6.400000e-03   p_cons 9.856778e-01   p_joint 1.285222e-01

Joint ci ratio: 3.223642e-02	ci left: 1.267395e-01	ci right 1.309020e-01	k: 12881	n:100000
Cons ci ratio: 1.493038e-03	ci left: 9.849551e-01	ci right 9.864365e-01	k: 98571	n:100000
KS ci ratio: 1.555588e-01	ci left: 5.818968e-03	ci right 6.809994e-03	k: 630	n:100000
ZMPSTE24   100000 perm   22 sec   (4584 perm/sec)   p_kst 6.300000e-03   p_cons 9.857100e-01   p_joint 1.288100e-01

Joint ci ratio: 3.069919e-02	ci left: 1.271057e-01	ci right 1.310775e-01	k: 14199	n:110000
Cons ci ratio: 1.419882e-03	ci left: 9.850647e-01	ci right 9.864732e-01	k: 108436	n:110000
KS ci ratio: 1.488710e-01	ci left: 5.797162e-03	ci right 6.738246e-03	k: 688	n:110000
ZMPSTE24   110000 perm   25 sec   (4489 perm/sec)   p_kst 6.254545e-03   p_cons 9.857818e-01   p_joint 1.290818e-01

Joint ci ratio: 2.940522e-02	ci left: 1.270917e-01	ci right 1.308929e-01	k: 15478	n:120000
Cons ci ratio: 1.358518e-03	ci left: 9.851145e-01	ci right 9.864618e-01	k: 118296	n:120000
KS ci ratio: 1.418357e-01	ci left: 5.876208e-03	ci right 6.781231e-03	k: 758	n:120000
ZMPSTE24   120000 perm   27 sec   (4402 perm/sec)   p_kst 6.316667e-03   p_cons 9.858000e-01   p_joint 1.289833e-01

Joint ci ratio: 2.826413e-02	ci left: 1.270676e-01	ci right 1.307182e-01	k: 16755	n:130000
Cons ci ratio: 1.299807e-03	ci left: 9.852600e-01	ci right 9.865489e-01	k: 128169	n:130000
KS ci ratio: 1.359597e-01	ci left: 5.921681e-03	ci right 6.792866e-03	k: 825	n:130000
ZMPSTE24   130000 perm   30 sec   (4317 perm/sec)   p_kst 6.346154e-03   p_cons 9.859154e-01   p_joint 1.288846e-01

Joint ci ratio: 2.724374e-02	ci left: 1.270707e-01	ci right 1.305875e-01	k: 18035	n:140000
Cons ci ratio: 1.251908e-03	ci left: 9.852978e-01	ci right 9.865391e-01	k: 138030	n:140000
KS ci ratio: 1.310540e-01	ci left: 5.933678e-03	ci right 6.772679e-03	k: 888	n:140000
ZMPSTE24   140000 perm   33 sec   (4234 perm/sec)   p_kst 6.342857e-03   p_cons 9.859286e-01   p_joint 1.288214e-01

Joint ci ratio: 3.135006e-02	ci left: 9.291163e-02	ci right 9.587740e-02	k: 14158	n:150000
Cons ci ratio: 1.211553e-03	ci left: 9.852701e-01	ci right 9.864710e-01	k: 147882	n:150000
KS ci ratio: 1.271149e-01	ci left: 5.899372e-03	ci right 6.706557e-03	k: 944	n:150000
ZMPSTE24   150000 perm   36 sec   (4159 perm/sec)   p_kst 6.293333e-03   p_cons 9.858800e-01   p_joint 9.438667e-02

Joint ci ratio: 3.036116e-02	ci left: 9.292192e-02	ci right 9.579280e-02	k: 15096	n:160000
Cons ci ratio: 1.175642e-03	ci left: 9.852274e-01	ci right 9.863924e-01	k: 157731	n:160000
KS ci ratio: 1.233250e-01	ci left: 5.887859e-03	ci right 6.667695e-03	k: 1003	n:160000
ZMPSTE24   160000 perm   39 sec   (4084 perm/sec)   p_kst 6.268750e-03   p_cons 9.858187e-01   p_joint 9.435000e-02

Joint ci ratio: 2.946537e-02	ci left: 9.290308e-02	ci right 9.568725e-02	k: 16029	n:170000
Cons ci ratio: 1.140811e-03	ci left: 9.852383e-01	ci right 9.863686e-01	k: 167588	n:170000
KS ci ratio: 1.204839e-01	ci left: 5.815244e-03	ci right 6.566452e-03	k: 1051	n:170000
ZMPSTE24   170000 perm   42 sec   (4013 perm/sec)   p_kst 6.182353e-03   p_cons 9.858118e-01   p_joint 9.428824e-02

Joint ci ratio: 2.882207e-02	ci left: 9.184422e-02	ci right 9.453556e-02	k: 16773	n:180000
Cons ci ratio: 1.105377e-03	ci left: 9.853390e-01	ci right 9.864342e-01	k: 177461	n:180000
KS ci ratio: 1.177228e-01	ci left: 5.761667e-03	ci right 6.487711e-03	k: 1101	n:180000
ZMPSTE24   180000 perm   46 sec   (3945 perm/sec)   p_kst 6.116667e-03   p_cons 9.858944e-01   p_joint 9.318333e-02

Joint ci ratio: 3.219114e-02	ci left: 7.122820e-02	ci right 7.356382e-02	k: 13754	n:190000
Cons ci ratio: 1.078922e-03	ci left: 9.852740e-01	ci right 9.863427e-01	k: 187305	n:190000
KS ci ratio: 1.144456e-01	ci left: 5.785487e-03	ci right 6.492866e-03	k: 1165	n:190000
ZMPSTE24   190000 perm   49 sec   (3880 perm/sec)   p_kst 6.131579e-03   p_cons 9.858158e-01   p_joint 7.238947e-02

Joint ci ratio: 3.134799e-02	ci left: 7.137716e-02	ci right 7.365525e-02	k: 14502	n:200000
Cons ci ratio: 1.050683e-03	ci left: 9.853126e-01	ci right 9.863533e-01	k: 197168	n:200000
KS ci ratio: 1.116104e-01	ci left: 5.787732e-03	ci right 6.476700e-03	k: 1225	n:200000
ZMPSTE24   200000 perm   52 sec   (3817 perm/sec)   p_kst 6.125000e-03   p_cons 9.858400e-01   p_joint 7.251000e-02

Joint ci ratio: 3.058076e-02	ci left: 7.145591e-02	ci right 7.367972e-02	k: 15238	n:210000
Cons ci ratio: 1.028043e-03	ci left: 9.852509e-01	ci right 9.862690e-01	k: 207011	n:210000
KS ci ratio: 1.086365e-01	ci left: 5.827023e-03	ci right 6.501003e-03	k: 1293	n:210000
ZMPSTE24   210000 perm   56 sec   (3757 perm/sec)   p_kst 6.157143e-03   p_cons 9.857667e-01   p_joint 7.256190e-02

Joint ci ratio: 2.982399e-02	ci left: 7.172223e-02	ci right 7.389814e-02	k: 16017	n:220000
Cons ci ratio: 1.003857e-03	ci left: 9.852784e-01	ci right 9.862724e-01	k: 216872	n:220000
KS ci ratio: 1.062421e-01	ci left: 5.823133e-03	ci right 6.480890e-03	k: 1352	n:220000
ZMPSTE24   220000 perm   59 sec   (3700 perm/sec)   p_kst 6.145455e-03   p_cons 9.857818e-01   p_joint 7.280455e-02

Joint ci ratio: 2.999276e-02	ci left: 6.809697e-02	ci right 7.017477e-02	k: 15900	n:230000
Cons ci ratio: 9.793187e-04	ci left: 9.853612e-01	ci right 9.863309e-01	k: 226746	n:230000
KS ci ratio: 1.043344e-01	ci left: 5.781613e-03	ci right 6.422234e-03	k: 1402	n:230000
ZMPSTE24   230000 perm   63 sec   (3644 perm/sec)   p_kst 6.095652e-03   p_cons 9.858522e-01   p_joint 6.913043e-02

Joint ci ratio: 2.937777e-02	ci left: 6.804705e-02	ci right 7.008004e-02	k: 16574	n:240000
Cons ci ratio: 9.610558e-04	ci left: 9.853017e-01	ci right 9.862532e-01	k: 236588	n:240000
KS ci ratio: 1.016844e-01	ci left: 5.841112e-03	ci right 6.470905e-03	k: 1476	n:240000
ZMPSTE24   240000 perm   67 sec   (3587 perm/sec)   p_kst 6.150000e-03   p_cons 9.857833e-01   p_joint 6.905833e-02

Joint ci ratio: 2.874456e-02	ci left: 6.824390e-02	ci right 7.023810e-02	k: 17309	n:250000
Cons ci ratio: 9.402666e-04	ci left: 9.853529e-01	ci right 9.862838e-01	k: 246456	n:250000
KS ci ratio: 9.951751e-02	ci left: 5.860928e-03	ci right 6.478605e-03	k: 1541	n:250000
ZMPSTE24   250000 perm   71 sec   (3534 perm/sec)   p_kst 6.164000e-03   p_cons 9.858240e-01   p_joint 6.923600e-02

Outputting figure to mutsig2_images.part000000000194/ZMPSTE24.2_1468_250000_0.006164_0.98582_0.069236.png
                gene_name: ZMPSTE24
               theta_stop: 0.100 
                    nperm: 250000 
                     p_ks: 0.0062 
        ci_ks_bounds_left: 0.0059 
       ci_ks_bounds_right: 0.0065 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.069 
     ci_joint_bounds_left: 0.068 
    ci_joint_bounds_right: 0.070 

Current progress: 98 percent done.
ZMYND11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.391093e-02	ci left: 8.818604e-01	ci right 8.943125e-01	k: 8882	n:10000
Cons ci ratio: 6.639309e-03	ci left: 9.687871e-01	ci right 9.753341e-01	k: 9722	n:10000
KS ci ratio: 2.744056e-02	ci left: 6.617930e-01	ci right 6.803073e-01	k: 6711	n:10000
ZMYND11   10000 perm   2 sec   (6429 perm/sec)   p_kst 6.711000e-01   p_cons 9.722000e-01   p_joint 8.882000e-01

Outputting figure to mutsig2_images.part000000000194/ZMYND11.2_1886_10000_0.6711_0.9722_0.8882.png
                gene_name: ZMYND11
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000194
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 194 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1544>
Subject: Job 8004710: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1544>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000195> was used as the working directory.
Started at Sun Nov 11 15:26:20 2012
Results reported at Sun Nov 11 18:44:23 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000195.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000195.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 195  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000195.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  12885.56 sec.
    Max Memory :      4796 MB
    Max Swap   :      7192 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
195
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 195
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 195: processing genes 17552 - 17642
Calculating significance of each gene.
Using projection method.
17552	ZMYND17	8.435589e-01
17553	ZMYND19	1
17554	ZMYND8	1
17555	ZNF10	3.291597e-01
17556	ZNF100	1
17557	ZNF101	6.808864e-01
17558	ZNF107	6.011052e-01
17559	ZNF114	7.012420e-01
17560	ZNF117	9.821285e-02
17561	ZNF12	7.549166e-01
17562	ZNF121	2.050302e-01
17563	ZNF124	1
17564	ZNF131	6.365502e-01
17565	ZNF132	1
17566	ZNF133	6.703272e-01
17567	ZNF134	1
17568	ZNF135	9.258111e-01
17569	ZNF136	3.743193e-01
17570	ZNF138	1
17571	ZNF14	2.844605e-01
17572	ZNF140	1
17573	ZNF141	1
17574	ZNF142	9.943975e-01
17575	ZNF143	6.050178e-01
17576	ZNF146	1.453221e-01
17577	ZNF148	5.894889e-01
17578	ZNF154	1
17579	ZNF155	7.377229e-01
17580	ZNF157	7.329808e-01
17581	ZNF16	3.823769e-01
17582	ZNF160	3.562134e-01
17583	ZNF165	7.264331e-01
17584	ZNF167	7.480823e-01
17585	ZNF169	7.978732e-01
17586	ZNF17	4.956645e-01
17587	ZNF174	5.767671e-01
17588	ZNF175	6.705401e-01
17589	ZNF177	7.218269e-01
17590	ZNF18	8.997491e-01
17591	ZNF180	7.657271e-01
17592	ZNF181	1.549710e-01
17593	ZNF182	1
17594	ZNF184	4.081467e-01
17595	ZNF185	4.377942e-01
17596	ZNF187	1
17597	ZNF189	6.996163e-01
17598	ZNF19	4.677841e-01
17599	ZNF192	2.716478e-01
17600	ZNF193	1
17601	ZNF195	8.390268e-01
17602	ZNF197	6.223596e-01
17603	ZNF2	6.623474e-01
17604	ZNF20	1
17605	ZNF200	5.714628e-01
17606	ZNF202	3.811236e-01
17607	ZNF205	8.464202e-01
17608	ZNF207	6.205411e-01
17609	ZNF208	9.663643e-01
17610	ZNF211	1.431271e-01
17611	ZNF212	1
17612	ZNF213	9.007350e-01
17613	ZNF214	5.931233e-01
17614	ZNF215	1.572879e-01
17615	ZNF217	7.389371e-01
17616	ZNF219	4.573639e-01
17617	ZNF22	3.139722e-01
17618	ZNF221	3.045358e-01
17619	ZNF222	2.998190e-02
17620	ZNF223	1
17621	ZNF224	8.526820e-01
17622	ZNF225	8.511322e-01
17623	ZNF226	8.621116e-01
17624	ZNF227	4.627072e-01
17625	ZNF229	2.160258e-01
17626	ZNF23	8.787729e-01
17627	ZNF230	3.079992e-03
17628	ZNF232	5.371763e-01
17629	ZNF233	8.578217e-01
17630	ZNF234	2.493933e-01
17631	ZNF235	4.997357e-02
17632	ZNF236	6.177932e-01
17633	ZNF238	1.561078e-02
17634	ZNF239	5.850564e-02
17635	ZNF24	1
17636	ZNF248	6.312492e-01
17637	ZNF25	2.337595e-01
17638	ZNF250	4.593321e-01
17639	ZNF251	8.897834e-01
17640	ZNF253	4.999423e-01
17641	ZNF254	8.335761e-04
17642	ZNF256	7.065138e-01
Done

Running MutSig 2:
Scatter job 195: processing genes 17552 - 17642
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ZNF208
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.817418e-02	ci left: 8.154773e-01	ci right 8.305340e-01	k: 8231	n:10000
Cons ci ratio: 2.239042e-02	ci left: 7.454356e-01	ci right 7.624162e-01	k: 7540	n:10000
KS ci ratio: 2.671637e-02	ci left: 6.735763e-01	ci right 6.919171e-01	k: 6828	n:10000
ZNF208   10000 perm   3 sec   (3436 perm/sec)   p_kst 6.828000e-01   p_cons 7.540000e-01   p_joint 8.231000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF208.27_3859_10000_0.6828_0.754_0.8231.png
                gene_name: ZNF208
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 2 percent done.
ZNF236
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.359337e-02	ci left: 4.372220e-01	ci right 4.568089e-01	k: 4470	n:10000
Cons ci ratio: 1.565400e-02	ci left: 8.555948e-01	ci right 8.691933e-01	k: 8625	n:10000
KS ci ratio: 7.503512e-02	ci left: 2.062917e-01	ci right 2.224751e-01	k: 2143	n:10000
ZNF236   10000 perm   3 sec   (3313 perm/sec)   p_kst 2.143000e-01   p_cons 8.625000e-01   p_joint 4.470000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF236.16_5662_10000_0.2143_0.8625_0.447.png
                gene_name: ZNF236
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 3 percent done.
ZNF254
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.221033e-02	ci left: 3.509817e-01	ci right 3.698997e-01	k: 3604	n:10000
Cons ci ratio: 1.833616e-02	ci left: 8.128353e-01	ci right 8.279776e-01	k: 8205	n:10000
KS ci ratio: 6.901795e-02	ci left: 2.354100e-01	ci right 2.523395e-01	k: 2438	n:10000
ZNF254   10000 perm   2 sec   (4651 perm/sec)   p_kst 2.438000e-01   p_cons 8.205000e-01   p_joint 3.604000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF254.9_1996_10000_0.2438_0.8205_0.3604.png
                gene_name: ZNF254
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 5 percent done.
ZNF229
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.833233e-02	ci left: 3.870929e-01	ci right 4.063673e-01	k: 3967	n:10000
Cons ci ratio: 7.934133e-02	ci left: 1.883574e-01	ci right 2.040200e-01	k: 1961	n:10000
KS ci ratio: 2.958900e-02	ci left: 6.274864e-01	ci right 6.464337e-01	k: 6370	n:10000
ZNF229   10000 perm   2 sec   (4766 perm/sec)   p_kst 6.370000e-01   p_cons 1.961000e-01   p_joint 3.967000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF229.8_2494_10000_0.637_0.1961_0.3967.png
                gene_name: ZNF229
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 7 percent done.
ZNF230
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.602870e-02	ci left: 4.105999e-01	ci right 4.300466e-01	k: 4203	n:10000
Cons ci ratio: 1.027723e-01	ci left: 1.204354e-01	ci right 1.335827e-01	k: 1269	n:10000
KS ci ratio: 1.154075e-02	ci left: 9.148185e-01	ci right 9.255352e-01	k: 9203	n:10000
ZNF230   10000 perm   2 sec   (5539 perm/sec)   p_kst 9.203000e-01   p_cons 1.269000e-01   p_joint 4.203000e-01

Joint ci ratio: 3.746896e-02	ci left: 3.470206e-01	ci right 3.603219e-01	k: 7073	n:20000
Cons ci ratio: 7.463747e-02	ci left: 1.166581e-01	ci right 1.257524e-01	k: 2423	n:20000
KS ci ratio: 8.327180e-03	ci left: 9.133458e-01	ci right 9.210324e-01	k: 18345	n:20000
ZNF230   20000 perm   4 sec   (4868 perm/sec)   p_kst 9.172500e-01   p_cons 1.211500e-01   p_joint 3.536500e-01

Outputting figure to mutsig2_images.part000000000195/ZNF230.7_1441_20000_0.91725_0.12115_0.35365.png
                gene_name: ZNF230
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 8 percent done.
ZNF107
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.301967e-02	ci left: 8.946712e-01	ci right 9.064942e-01	k: 9007	n:10000
KS ci ratio: 1.504163e-02	ci left: 8.649871e-01	ci right 8.781956e-01	k: 8717	n:10000
ZNF107   10000 perm   2 sec   (4807 perm/sec)   p_kst 8.717000e-01   p_cons 9.007000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000195/ZNF107.6_2360_10000_0.8717_0.9007_1.png
                gene_name: ZNF107
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 10 percent done.
ZNF135
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.306720e-02	ci left: 5.744668e-01	ci right 5.938842e-01	k: 5842	n:10000
Cons ci ratio: 1.766047e-02	ci left: 8.238140e-01	ci right 8.385925e-01	k: 8313	n:10000
KS ci ratio: 6.321963e-02	ci left: 2.688388e-01	ci right 2.864909e-01	k: 2776	n:10000
ZNF135   10000 perm   2 sec   (4881 perm/sec)   p_kst 2.776000e-01   p_cons 8.313000e-01   p_joint 5.842000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF135.6_2182_10000_0.2776_0.8313_0.5842.png
                gene_name: ZNF135
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 12 percent done.
ZNF235
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.381047e-02	ci left: 3.372686e-01	ci right 3.560208e-01	k: 3466	n:10000
Cons ci ratio: 4.219262e-02	ci left: 4.533887e-01	ci right 4.730328e-01	k: 4632	n:10000
KS ci ratio: 6.890587e-02	ci left: 2.360028e-01	ci right 2.529463e-01	k: 2444	n:10000
ZNF235   10000 perm   2 sec   (5217 perm/sec)   p_kst 2.444000e-01   p_cons 4.632000e-01   p_joint 3.466000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF235.6_2233_10000_0.2444_0.4632_0.3466.png
                gene_name: ZNF235
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 14 percent done.
ZNF238
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.089238e-02	ci left: 4.689664e-01	ci right 4.886460e-01	k: 4788	n:10000
Cons ci ratio: 1.305483e-01	ci left: 7.727681e-02	ci right 8.816773e-02	k: 826	n:10000
KS ci ratio: 3.142636e-02	ci left: 5.990540e-01	ci right 6.182826e-01	k: 6087	n:10000
ZNF238   10000 perm   2 sec   (5456 perm/sec)   p_kst 6.087000e-01   p_cons 8.260000e-02   p_joint 4.788000e-01

Joint ci ratio: 4.148449e-02	ci left: 3.022015e-01	ci right 3.150542e-01	k: 6172	n:20000
Cons ci ratio: 9.067967e-02	ci left: 8.156220e-02	ci right 8.935881e-02	k: 1708	n:20000
KS ci ratio: 2.239123e-02	ci left: 5.982854e-01	ci right 6.118840e-01	k: 12102	n:20000
ZNF238   20000 perm   4 sec   (4867 perm/sec)   p_kst 6.051000e-01   p_cons 8.540000e-02   p_joint 3.086000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF238.6_1604_20000_0.6051_0.0854_0.3086.png
                gene_name: ZNF238
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.085 
      ci_cons_bounds_left: 0.082 
     ci_cons_bounds_right: 0.089 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 15 percent done.
ZNF100
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.893690e-02	ci left: 2.975703e-01	ci right 3.157424e-01	k: 3066	n:10000
Cons ci ratio: 1.318628e-02	ci left: 8.923120e-01	ci right 9.042548e-01	k: 8984	n:10000
KS ci ratio: 9.990851e-02	ci left: 1.266956e-01	ci right 1.401187e-01	k: 1333	n:10000
ZNF100   10000 perm   2 sec   (5408 perm/sec)   p_kst 1.333000e-01   p_cons 8.984000e-01   p_joint 3.066000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF100.5_1649_10000_0.1333_0.8984_0.3066.png
                gene_name: ZNF100
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 17 percent done.
ZNF211
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.118833e-02	ci left: 7.655723e-01	ci right 7.820679e-01	k: 7739	n:10000
KS ci ratio: 1.340890e-02	ci left: 8.891337e-01	ci right 9.012350e-01	k: 8953	n:10000
ZNF211   10000 perm   2 sec   (5115 perm/sec)   p_kst 8.953000e-01   p_cons 7.739000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000195/ZNF211.5_1750_10000_0.8953_0.7739_1.png
                gene_name: ZNF211
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 19 percent done.
ZNF215
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.216596e-02	ci left: 9.064824e-01	ci right 9.176761e-01	k: 9122	n:10000
Cons ci ratio: 4.089238e-02	ci left: 4.689664e-01	ci right 4.886460e-01	k: 4788	n:10000
KS ci ratio: 2.431726e-02	ci left: 7.132062e-01	ci right 7.308642e-01	k: 7221	n:10000
ZNF215   10000 perm   2 sec   (5427 perm/sec)   p_kst 7.221000e-01   p_cons 4.788000e-01   p_joint 9.122000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF215.5_1574_10000_0.7221_0.4788_0.9122.png
                gene_name: ZNF215
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 20 percent done.
ZNF221
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.353717e-02	ci left: 8.872890e-01	ci right 8.994808e-01	k: 8935	n:10000
KS ci ratio: 5.918697e-03	ci left: 9.747193e-01	ci right 9.805979e-01	k: 9778	n:10000
ZNF221   10000 perm   2 sec   (5726 perm/sec)   p_kst 9.778000e-01   p_cons 8.935000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000195/ZNF221.5_1870_10000_0.9778_0.8935_1.png
                gene_name: ZNF221
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 22 percent done.
ZNF222
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.847396e-02	ci left: 3.856991e-01	ci right 4.049619e-01	k: 3953	n:10000
Cons ci ratio: 2.204041e-02	ci left: 7.513020e-01	ci right 7.681465e-01	k: 7598	n:10000
KS ci ratio: 6.992814e-02	ci left: 2.306682e-01	ci right 2.474840e-01	k: 2390	n:10000
ZNF222   10000 perm   2 sec   (5226 perm/sec)   p_kst 2.390000e-01   p_cons 7.598000e-01   p_joint 3.953000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF222.5_1511_10000_0.239_0.7598_0.3953.png
                gene_name: ZNF222
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.40 

Current progress: 24 percent done.
ZNF23
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.263175e-02	ci left: 7.413911e-01	ci right 7.584631e-01	k: 7500	n:10000
Cons ci ratio: 1.698901e-02	ci left: 8.346000e-01	ci right 8.490003e-01	k: 8419	n:10000
KS ci ratio: 3.665096e-02	ci left: 5.236636e-01	ci right 5.433168e-01	k: 5335	n:10000
ZNF23   10000 perm   2 sec   (5054 perm/sec)   p_kst 5.335000e-01   p_cons 8.419000e-01   p_joint 7.500000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF23.5_1944_10000_0.5335_0.8419_0.75.png
                gene_name: ZNF23
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 25 percent done.
ZNF239
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.147254e-02	ci left: 5.983512e-01	ci right 6.175859e-01	k: 6080	n:10000
Cons ci ratio: 1.891855e-02	ci left: 8.032880e-01	ci right 8.187304e-01	k: 8111	n:10000
KS ci ratio: 6.199738e-02	ci left: 2.766613e-01	ci right 2.944638e-01	k: 2855	n:10000
ZNF239   10000 perm   2 sec   (6018 perm/sec)   p_kst 2.855000e-01   p_cons 8.111000e-01   p_joint 6.080000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF239.5_1381_10000_0.2855_0.8111_0.608.png
                gene_name: ZNF239
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 27 percent done.
ZNF117
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.648024e-02	ci left: 3.158221e-01	ci right 3.342799e-01	k: 3250	n:10000
Cons ci ratio: 7.512432e-02	ci left: 2.058972e-01	ci right 2.220697e-01	k: 2139	n:10000
KS ci ratio: 6.870133e-02	ci left: 2.370897e-01	ci right 2.540587e-01	k: 2455	n:10000
ZNF117   10000 perm   2 sec   (5741 perm/sec)   p_kst 2.455000e-01   p_cons 2.139000e-01   p_joint 3.250000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF117.4_1460_10000_0.2455_0.2139_0.325.png
                gene_name: ZNF117
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 29 percent done.
ZNF14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.881274e-02	ci left: 2.364969e-01	ci right 2.534520e-01	k: 2449	n:10000
Cons ci ratio: 8.783046e-02	ci left: 1.587554e-01	ci right 1.734397e-01	k: 1660	n:10000
KS ci ratio: 8.452535e-02	ci left: 1.694660e-01	ci right 1.845227e-01	k: 1769	n:10000
ZNF14   10000 perm   2 sec   (5359 perm/sec)   p_kst 1.769000e-01   p_cons 1.660000e-01   p_joint 2.449000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF14.4_1945_10000_0.1769_0.166_0.2449.png
                gene_name: ZNF14
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 31 percent done.
ZNF16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.860936e-02	ci left: 8.083654e-01	ci right 8.236501e-01	k: 8161	n:10000
Cons ci ratio: 3.632827e-02	ci left: 5.280685e-01	ci right 5.477094e-01	k: 5379	n:10000
KS ci ratio: 2.767703e-02	ci left: 6.579673e-01	ci right 6.765351e-01	k: 6673	n:10000
ZNF16   10000 perm   2 sec   (5313 perm/sec)   p_kst 6.673000e-01   p_cons 5.379000e-01   p_joint 8.161000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF16.4_2057_10000_0.6673_0.5379_0.8161.png
                gene_name: ZNF16
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 32 percent done.
ZNF160
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.873855e-02	ci left: 3.831109e-01	ci right 4.023516e-01	k: 3927	n:10000
Cons ci ratio: 3.966721e-02	ci left: 4.841538e-01	ci right 5.038497e-01	k: 4940	n:10000
KS ci ratio: 5.479894e-02	ci left: 3.291243e-01	ci right 3.477699e-01	k: 3384	n:10000
ZNF160   10000 perm   2 sec   (5065 perm/sec)   p_kst 3.384000e-01   p_cons 4.940000e-01   p_joint 3.927000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF160.4_2473_10000_0.3384_0.494_0.3927.png
                gene_name: ZNF160
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 34 percent done.
ZNF181
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.963012e-01	ci left: 1.465041e-02	ci right 1.983629e-02	k: 171	n:10000
Cons ci ratio: 2.669889e-01	ci left: 1.827990e-02	ci right 2.400381e-02	k: 210	n:10000
KS ci ratio: 4.479208e-01	ci left: 5.903663e-03	ci right 9.392367e-03	k: 75	n:10000
ZNF181   10000 perm   2 sec   (5530 perm/sec)   p_kst 7.500000e-03   p_cons 2.100000e-02   p_joint 1.710000e-02

Joint ci ratio: 2.419888e-01	ci left: 1.138222e-02	ci right 1.456171e-02	k: 258	n:20000
Cons ci ratio: 1.908840e-01	ci left: 1.867638e-02	ci right 2.266469e-02	k: 412	n:20000
KS ci ratio: 3.221178e-01	ci left: 6.167283e-03	ci right 8.579269e-03	k: 146	n:20000
ZNF181   20000 perm   4 sec   (4834 perm/sec)   p_kst 7.300000e-03   p_cons 2.060000e-02   p_joint 1.290000e-02

Joint ci ratio: 3.953260e-01	ci left: 2.622774e-03	ci right 3.942989e-03	k: 97	n:30000
Cons ci ratio: 1.639452e-01	ci left: 1.716520e-02	ci right 2.026233e-02	k: 560	n:30000
KS ci ratio: 2.689088e-01	ci left: 6.087891e-03	ci right 8.009438e-03	k: 210	n:30000
ZNF181   30000 perm   6 sec   (4623 perm/sec)   p_kst 7.000000e-03   p_cons 1.866667e-02   p_joint 3.233333e-03

Joint ci ratio: 3.194620e-01	ci left: 3.151775e-03	ci right 4.372012e-03	k: 149	n:40000
Cons ci ratio: 1.335801e-01	ci left: 1.966558e-02	ci right 2.250455e-02	k: 842	n:40000
KS ci ratio: 2.364353e-01	ci left: 6.018107e-03	ci right 7.654721e-03	k: 272	n:40000
ZNF181   40000 perm   9 sec   (4484 perm/sec)   p_kst 6.800000e-03   p_cons 2.105000e-02   p_joint 3.725000e-03

Joint ci ratio: 2.816199e-01	ci left: 3.316859e-03	ci right 4.421972e-03	k: 192	n:50000
Cons ci ratio: 1.171565e-01	ci left: 2.061553e-02	ci right 2.320039e-02	k: 1094	n:50000
KS ci ratio: 2.144204e-01	ci left: 5.927960e-03	ci right 7.370215e-03	k: 331	n:50000
ZNF181   50000 perm   11 sec   (4364 perm/sec)   p_kst 6.620000e-03   p_cons 2.188000e-02   p_joint 3.840000e-03

Joint ci ratio: 1.853438e-01	ci left: 6.713914e-03	ci right 8.101039e-03	k: 443	n:60000
Cons ci ratio: 1.129870e-01	ci left: 1.855438e-02	ci right 2.079242e-02	k: 1179	n:60000
KS ci ratio: 1.975943e-01	ci left: 5.872626e-03	ci right 7.175797e-03	k: 390	n:60000
ZNF181   60000 perm   14 sec   (4257 perm/sec)   p_kst 6.500000e-03   p_cons 1.965000e-02   p_joint 7.383333e-03

Joint ci ratio: 3.408679e-01	ci left: 1.564926e-03	ci right 2.220326e-03	k: 131	n:70000
Cons ci ratio: 1.042842e-01	ci left: 1.875294e-02	ci right 2.083000e-02	k: 1384	n:70000
KS ci ratio: 1.827690e-01	ci left: 5.931717e-03	ci right 7.138307e-03	k: 456	n:70000
ZNF181   70000 perm   17 sec   (4170 perm/sec)   p_kst 6.514286e-03   p_cons 1.977143e-02   p_joint 1.871429e-03

Joint ci ratio: 1.982669e-01	ci left: 4.380366e-03	ci right 5.356074e-03	k: 388	n:80000
Cons ci ratio: 9.789213e-02	ci left: 1.868722e-02	ci right 2.062284e-02	k: 1571	n:80000
KS ci ratio: 1.682756e-01	ci left: 6.170348e-03	ci right 7.315863e-03	k: 538	n:80000
ZNF181   80000 perm   20 sec   (4087 perm/sec)   p_kst 6.725000e-03   p_cons 1.963750e-02   p_joint 4.850000e-03

Joint ci ratio: 1.980653e-01	ci left: 3.904121e-03	ci right 4.772748e-03	k: 389	n:90000
Cons ci ratio: 9.233359e-02	ci left: 1.872603e-02	ci right 2.054956e-02	k: 1766	n:90000
KS ci ratio: 1.599010e-01	ci left: 6.102728e-03	ci right 7.173888e-03	k: 596	n:90000
ZNF181   90000 perm   22 sec   (4008 perm/sec)   p_kst 6.622222e-03   p_cons 1.962222e-02   p_joint 4.322222e-03

Joint ci ratio: 2.097671e-01	ci left: 3.115000e-03	ci right 3.854261e-03	k: 347	n:100000
Cons ci ratio: 8.820064e-02	ci left: 1.851497e-02	ci right 2.023307e-02	k: 1936	n:100000
KS ci ratio: 1.462801e-01	ci left: 6.608218e-03	ci right 7.660674e-03	k: 712	n:100000
ZNF181   100000 perm   25 sec   (3936 perm/sec)   p_kst 7.120000e-03   p_cons 1.936000e-02   p_joint 3.470000e-03

Joint ci ratio: 2.018119e-01	ci left: 3.073242e-03	ci right 3.771526e-03	k: 375	n:110000
Cons ci ratio: 8.390950e-02	ci left: 1.863758e-02	ci right 2.027880e-02	k: 2139	n:110000
KS ci ratio: 1.407711e-01	ci left: 6.507023e-03	ci right 7.501055e-03	k: 769	n:110000
ZNF181   110000 perm   28 sec   (3867 perm/sec)   p_kst 6.990909e-03   p_cons 1.944545e-02   p_joint 3.409091e-03

Joint ci ratio: 1.969109e-01	ci left: 2.967553e-03	ci right 3.623481e-03	k: 394	n:120000
Cons ci ratio: 8.039955e-02	ci left: 1.864342e-02	ci right 2.021325e-02	k: 2330	n:120000
KS ci ratio: 1.348589e-01	ci left: 6.519954e-03	ci right 7.470773e-03	k: 838	n:120000
ZNF181   120000 perm   32 sec   (3799 perm/sec)   p_kst 6.983333e-03   p_cons 1.941667e-02   p_joint 3.283333e-03

Joint ci ratio: 1.952086e-01	ci left: 2.790457e-03	ci right 3.401272e-03	k: 401	n:130000
Cons ci ratio: 7.689293e-02	ci left: 1.884580e-02	ci right 2.036035e-02	k: 2547	n:130000
KS ci ratio: 1.314692e-01	ci left: 6.345567e-03	ci right 7.245876e-03	k: 882	n:130000
ZNF181   130000 perm   35 sec   (3735 perm/sec)   p_kst 6.784615e-03   p_cons 1.959231e-02   p_joint 3.084615e-03

Joint ci ratio: 1.872255e-01	ci left: 2.829180e-03	ci right 3.420268e-03	k: 436	n:140000
Cons ci ratio: 7.415105e-02	ci left: 1.884520e-02	ci right 2.030337e-02	k: 2739	n:140000
KS ci ratio: 1.267489e-01	ci left: 6.355431e-03	ci right 7.222329e-03	k: 949	n:140000
ZNF181   140000 perm   38 sec   (3675 perm/sec)   p_kst 6.778571e-03   p_cons 1.956429e-02   p_joint 3.114286e-03

Joint ci ratio: 1.898777e-01	ci left: 2.564310e-03	ci right 3.108523e-03	k: 424	n:150000
Cons ci ratio: 7.141023e-02	ci left: 1.898960e-02	ci right 2.040238e-02	k: 2953	n:150000
KS ci ratio: 1.214849e-01	ci left: 6.474377e-03	ci right 7.318186e-03	k: 1033	n:150000
ZNF181   150000 perm   41 sec   (3616 perm/sec)   p_kst 6.886667e-03   p_cons 1.968667e-02   p_joint 2.826667e-03

Joint ci ratio: 1.851499e-01	ci left: 2.535083e-03	ci right 3.058192e-03	k: 446	n:160000
Cons ci ratio: 6.908603e-02	ci left: 1.904309e-02	ci right 2.041189e-02	k: 3155	n:160000
KS ci ratio: 1.174095e-01	ci left: 6.512355e-03	ci right 7.330666e-03	k: 1106	n:160000
ZNF181   160000 perm   45 sec   (3559 perm/sec)   p_kst 6.912500e-03   p_cons 1.971875e-02   p_joint 2.787500e-03

Joint ci ratio: 1.805655e-01	ci left: 2.515060e-03	ci right 3.019782e-03	k: 469	n:170000
Cons ci ratio: 6.715879e-02	ci left: 1.898681e-02	ci right 2.031200e-02	k: 3339	n:170000
KS ci ratio: 1.136701e-01	ci left: 6.551998e-03	ci right 7.347309e-03	k: 1180	n:170000
ZNF181   170000 perm   49 sec   (3505 perm/sec)   p_kst 6.941176e-03   p_cons 1.964118e-02   p_joint 2.758824e-03

Joint ci ratio: 1.993081e-01	ci left: 1.930743e-03	ci right 2.363320e-03	k: 385	n:180000
Cons ci ratio: 6.532761e-02	ci left: 1.897005e-02	ci right 2.025660e-02	k: 3529	n:180000
KS ci ratio: 1.102665e-01	ci left: 6.587603e-03	ci right 7.361737e-03	k: 1254	n:180000
ZNF181   180000 perm   52 sec   (3453 perm/sec)   p_kst 6.966667e-03   p_cons 1.960556e-02   p_joint 2.138889e-03

Joint ci ratio: 1.090260e-01	ci left: 6.389297e-03	ci right 7.131136e-03	k: 1283	n:190000
Cons ci ratio: 6.008569e-02	ci left: 2.125177e-02	ci right 2.257340e-02	k: 4162	n:190000
KS ci ratio: 1.077656e-01	ci left: 6.542938e-03	ci right 7.293277e-03	k: 1313	n:190000
ZNF181   190000 perm   56 sec   (3400 perm/sec)   p_kst 6.910526e-03   p_cons 2.190526e-02   p_joint 6.752632e-03

Joint ci ratio: 1.137782e-01	ci left: 5.564179e-03	ci right 6.240263e-03	k: 1179	n:200000
Cons ci ratio: 5.869525e-02	ci left: 2.117430e-02	ci right 2.245961e-02	k: 4362	n:200000
KS ci ratio: 1.045116e-01	ci left: 6.619789e-03	ci right 7.354610e-03	k: 1396	n:200000
ZNF181   200000 perm   60 sec   (3350 perm/sec)   p_kst 6.980000e-03   p_cons 2.181000e-02   p_joint 5.895000e-03

Joint ci ratio: 1.113530e-01	ci left: 5.539861e-03	ci right 6.197701e-03	k: 1231	n:210000
Cons ci ratio: 5.713520e-02	ci left: 2.129704e-02	ci right 2.255430e-02	k: 4603	n:210000
KS ci ratio: 1.025524e-01	ci left: 6.555033e-03	ci right 7.268203e-03	k: 1450	n:210000
ZNF181   210000 perm   64 sec   (3301 perm/sec)   p_kst 6.904762e-03   p_cons 2.191905e-02   p_joint 5.861905e-03

Joint ci ratio: 1.106032e-01	ci left: 5.363150e-03	ci right 5.995436e-03	k: 1248	n:220000
Cons ci ratio: 5.585852e-02	ci left: 2.128349e-02	ci right 2.251097e-02	k: 4816	n:220000
KS ci ratio: 9.986745e-02	ci left: 6.607088e-03	ci right 7.305998e-03	k: 1529	n:220000
ZNF181   220000 perm   68 sec   (3253 perm/sec)   p_kst 6.950000e-03   p_cons 2.189091e-02   p_joint 5.672727e-03

Joint ci ratio: 1.106615e-01	ci left: 5.125707e-03	ci right 5.730338e-03	k: 1247	n:230000
Cons ci ratio: 5.466932e-02	ci left: 2.126712e-02	ci right 2.246671e-02	k: 5028	n:230000
KS ci ratio: 9.753563e-02	ci left: 6.633624e-03	ci right 7.318019e-03	k: 1603	n:230000
ZNF181   230000 perm   72 sec   (3207 perm/sec)   p_kst 6.969565e-03   p_cons 2.186087e-02   p_joint 5.421739e-03

Joint ci ratio: 1.094466e-01	ci left: 5.025577e-03	ci right 5.611468e-03	k: 1275	n:240000
Cons ci ratio: 5.350603e-02	ci left: 2.128937e-02	ci right 2.246388e-02	k: 5249	n:240000
KS ci ratio: 9.576299e-02	ci left: 6.601175e-03	ci right 7.269149e-03	k: 1663	n:240000
ZNF181   240000 perm   76 sec   (3162 perm/sec)   p_kst 6.929167e-03   p_cons 2.187083e-02   p_joint 5.312500e-03

Joint ci ratio: 1.073640e-01	ci left: 5.019130e-03	ci right 5.592431e-03	k: 1325	n:250000
Cons ci ratio: 5.228709e-02	ci left: 2.141276e-02	ci right 2.256636e-02	k: 5496	n:250000
KS ci ratio: 9.335034e-02	ci left: 6.676911e-03	ci right 7.334597e-03	k: 1750	n:250000
ZNF181   250000 perm   80 sec   (3121 perm/sec)   p_kst 7.000000e-03   p_cons 2.198400e-02   p_joint 5.300000e-03

Joint ci ratio: 1.054730e-01	ci left: 5.005786e-03	ci right 5.566867e-03	k: 1373	n:260000
Cons ci ratio: 5.122080e-02	ci left: 2.146617e-02	ci right 2.259836e-02	k: 5727	n:260000
KS ci ratio: 9.103645e-02	ci left: 6.758292e-03	ci right 7.406615e-03	k: 1840	n:260000
ZNF181   260000 perm   84 sec   (3082 perm/sec)   p_kst 7.076923e-03   p_cons 2.202692e-02   p_joint 5.280769e-03

Joint ci ratio: 1.035322e-01	ci left: 5.007945e-03	ci right 5.558312e-03	k: 1425	n:270000
Cons ci ratio: 5.023443e-02	ci left: 2.150121e-02	ci right 2.261278e-02	k: 5954	n:270000
KS ci ratio: 8.944803e-02	ci left: 6.746911e-03	ci right 7.382258e-03	k: 1906	n:270000
ZNF181   270000 perm   89 sec   (3043 perm/sec)   p_kst 7.059259e-03   p_cons 2.205185e-02   p_joint 5.277778e-03

Joint ci ratio: 1.046167e-01	ci left: 4.728179e-03	ci right 5.253576e-03	k: 1396	n:280000
Cons ci ratio: 4.926628e-02	ci left: 2.156570e-02	ci right 2.265851e-02	k: 6190	n:280000
KS ci ratio: 8.807492e-02	ci left: 6.715474e-03	ci right 7.337653e-03	k: 1966	n:280000
ZNF181   280000 perm   93 sec   (3004 perm/sec)   p_kst 7.021429e-03   p_cons 2.210714e-02   p_joint 4.985714e-03

Joint ci ratio: 1.069587e-01	ci left: 4.363671e-03	ci right 4.860101e-03	k: 1336	n:290000
Cons ci ratio: 4.842914e-02	ci left: 2.155779e-02	ci right 2.263111e-02	k: 6406	n:290000
KS ci ratio: 8.644165e-02	ci left: 6.736886e-03	ci right 7.348890e-03	k: 2041	n:290000
ZNF181   290000 perm   98 sec   (2966 perm/sec)   p_kst 7.037931e-03   p_cons 2.208966e-02   p_joint 4.606897e-03

Joint ci ratio: 1.075340e-01	ci left: 4.172779e-03	ci right 4.650206e-03	k: 1322	n:300000
Cons ci ratio: 4.765535e-02	ci left: 2.153078e-02	ci right 2.258515e-02	k: 6616	n:300000
KS ci ratio: 8.499713e-02	ci left: 6.740655e-03	ci right 7.342260e-03	k: 2111	n:300000
ZNF181   300000 perm   102 sec   (2930 perm/sec)   p_kst 7.036667e-03   p_cons 2.205333e-02   p_joint 4.406667e-03

Joint ci ratio: 1.060623e-01	ci left: 4.154338e-03	ci right 4.622744e-03	k: 1359	n:310000
Cons ci ratio: 4.691399e-02	ci left: 2.150883e-02	ci right 2.254530e-02	k: 6827	n:310000
KS ci ratio: 8.383578e-02	ci left: 6.709515e-03	ci right 7.299758e-03	k: 2170	n:310000
ZNF181   310000 perm   107 sec   (2893 perm/sec)   p_kst 7.000000e-03   p_cons 2.202258e-02   p_joint 4.383871e-03

Joint ci ratio: 1.096492e-01	ci left: 3.759930e-03	ci right 4.199128e-03	k: 1272	n:320000
Cons ci ratio: 4.628693e-02	ci left: 2.141422e-02	ci right 2.243197e-02	k: 7014	n:320000
KS ci ratio: 8.222098e-02	ci left: 6.763020e-03	ci right 7.345961e-03	k: 2256	n:320000
ZNF181   320000 perm   112 sec   (2858 perm/sec)   p_kst 7.050000e-03   p_cons 2.191875e-02   p_joint 3.975000e-03

Joint ci ratio: 1.102662e-01	ci left: 3.604719e-03	ci right 4.028310e-03	k: 1258	n:330000
Cons ci ratio: 4.562285e-02	ci left: 2.138236e-02	ci right 2.238364e-02	k: 7220	n:330000
KS ci ratio: 8.237695e-02	ci left: 6.534305e-03	ci right 7.098651e-03	k: 2248	n:330000
ZNF181   330000 perm   117 sec   (2825 perm/sec)   p_kst 6.812121e-03   p_cons 2.187879e-02   p_joint 3.812121e-03

Joint ci ratio: 1.100970e-01	ci left: 3.510129e-03	ci right 3.921930e-03	k: 1262	n:340000
Cons ci ratio: 4.498966e-02	ci left: 2.134957e-02	ci right 2.233507e-02	k: 7425	n:340000
KS ci ratio: 8.128288e-02	ci left: 6.517857e-03	ci right 7.072952e-03	k: 2309	n:340000
ZNF181   340000 perm   122 sec   (2793 perm/sec)   p_kst 6.791176e-03   p_cons 2.183824e-02   p_joint 3.711765e-03

Joint ci ratio: 1.176315e-01	ci left: 2.976756e-03	ci right 3.351544e-03	k: 1106	n:350000
Cons ci ratio: 4.441783e-02	ci left: 2.128483e-02	ci right 2.225454e-02	k: 7618	n:350000
KS ci ratio: 7.949199e-02	ci left: 6.625617e-03	ci right 7.176881e-03	k: 2414	n:350000
ZNF181   350000 perm   127 sec   (2760 perm/sec)   p_kst 6.897143e-03   p_cons 2.176571e-02   p_joint 3.160000e-03

Joint ci ratio: 1.164296e-01	ci left: 2.956085e-03	ci right 3.324206e-03	k: 1129	n:360000
Cons ci ratio: 4.383285e-02	ci left: 2.125674e-02	ci right 2.221209e-02	k: 7823	n:360000
KS ci ratio: 7.838016e-02	ci left: 6.629455e-03	ci right 7.172972e-03	k: 2483	n:360000
ZNF181   360000 perm   132 sec   (2728 perm/sec)   p_kst 6.897222e-03   p_cons 2.173056e-02   p_joint 3.136111e-03

Joint ci ratio: 1.166939e-01	ci left: 2.863064e-03	ci right 3.220465e-03	k: 1124	n:370000
Cons ci ratio: 4.319895e-02	ci left: 2.129977e-02	ci right 2.224287e-02	k: 8054	n:370000
KS ci ratio: 7.713140e-02	ci left: 6.664948e-03	ci right 7.202277e-03	k: 2564	n:370000
ZNF181   370000 perm   137 sec   (2699 perm/sec)   p_kst 6.929730e-03   p_cons 2.176757e-02   p_joint 3.037838e-03

Joint ci ratio: 1.159259e-01	ci left: 2.826042e-03	ci right 3.176341e-03	k: 1139	n:380000
Cons ci ratio: 4.262597e-02	ci left: 2.130678e-02	ci right 2.223737e-02	k: 8272	n:380000
KS ci ratio: 7.607086e-02	ci left: 6.675400e-03	ci right 7.205845e-03	k: 2636	n:380000
ZNF181   380000 perm   142 sec   (2668 perm/sec)   p_kst 6.936842e-03   p_cons 2.176842e-02   p_joint 2.997368e-03

Joint ci ratio: 1.149734e-01	ci left: 2.800888e-03	ci right 3.145024e-03	k: 1158	n:390000
Cons ci ratio: 4.214884e-02	ci left: 2.123992e-02	ci right 2.215695e-02	k: 8461	n:390000
KS ci ratio: 7.520680e-02	ci left: 6.657685e-03	ci right 7.180450e-03	k: 2697	n:390000
ZNF181   390000 perm   148 sec   (2638 perm/sec)   p_kst 6.915385e-03   p_cons 2.169487e-02   p_joint 2.969231e-03

Joint ci ratio: 1.155289e-01	ci left: 2.704151e-03	ci right 3.038115e-03	k: 1147	n:400000
Cons ci ratio: 4.156232e-02	ci left: 2.130266e-02	ci right 2.220929e-02	k: 8701	n:400000
KS ci ratio: 7.416878e-02	ci left: 6.677697e-03	ci right 7.194484e-03	k: 2773	n:400000
ZNF181   400000 perm   153 sec   (2610 perm/sec)   p_kst 6.932500e-03   p_cons 2.175250e-02   p_joint 2.867500e-03

Joint ci ratio: 1.153818e-01	ci left: 2.645297e-03	ci right 2.971548e-03	k: 1150	n:410000
Cons ci ratio: 4.105128e-02	ci left: 2.130930e-02	ci right 2.220480e-02	k: 8919	n:410000
KS ci ratio: 7.330220e-02	ci left: 6.672833e-03	ci right 7.182953e-03	k: 2839	n:410000
ZNF181   410000 perm   159 sec   (2580 perm/sec)   p_kst 6.924390e-03   p_cons 2.175366e-02   p_joint 2.804878e-03

Joint ci ratio: 1.136656e-01	ci left: 2.663262e-03	ci right 2.986515e-03	k: 1185	n:420000
Cons ci ratio: 4.052239e-02	ci left: 2.135340e-02	ci right 2.223893e-02	k: 9153	n:420000
KS ci ratio: 7.229016e-02	ci left: 6.700968e-03	ci right 7.205870e-03	k: 2919	n:420000
ZNF181   420000 perm   165 sec   (2552 perm/sec)   p_kst 6.950000e-03   p_cons 2.179286e-02   p_joint 2.821429e-03

Joint ci ratio: 1.122545e-01	ci left: 2.669122e-03	ci right 2.988798e-03	k: 1215	n:430000
Cons ci ratio: 4.002213e-02	ci left: 2.138632e-02	ci right 2.226201e-02	k: 9383	n:430000
KS ci ratio: 7.141485e-02	ci left: 6.709566e-03	ci right 7.208740e-03	k: 2991	n:430000
ZNF181   430000 perm   170 sec   (2525 perm/sec)   p_kst 6.955814e-03   p_cons 2.182093e-02   p_joint 2.825581e-03

Joint ci ratio: 1.144006e-01	ci left: 2.509074e-03	ci right 2.815715e-03	k: 1170	n:440000
Cons ci ratio: 3.951266e-02	ci left: 2.144706e-02	ci right 2.231380e-02	k: 9626	n:440000
KS ci ratio: 7.048956e-02	ci left: 6.733439e-03	ci right 7.227633e-03	k: 3070	n:440000
ZNF181   440000 perm   176 sec   (2499 perm/sec)   p_kst 6.977273e-03   p_cons 2.187727e-02   p_joint 2.659091e-03

Joint ci ratio: 1.131515e-01	ci left: 2.509451e-03	ci right 2.812565e-03	k: 1196	n:450000
Cons ci ratio: 3.909715e-02	ci left: 2.142373e-02	ci right 2.228022e-02	k: 9832	n:450000
KS ci ratio: 6.975559e-02	ci left: 6.725717e-03	ci right 7.213996e-03	k: 3135	n:450000
ZNF181   450000 perm   182 sec   (2472 perm/sec)   p_kst 6.966667e-03   p_cons 2.184889e-02   p_joint 2.657778e-03

Joint ci ratio: 1.176229e-01	ci left: 2.266984e-03	ci right 2.552384e-03	k: 1107	n:460000
Cons ci ratio: 3.866888e-02	ci left: 2.142945e-02	ci right 2.227658e-02	k: 10051	n:460000
KS ci ratio: 6.909844e-02	ci left: 6.707674e-03	ci right 7.189872e-03	k: 3195	n:460000
ZNF181   460000 perm   188 sec   (2446 perm/sec)   p_kst 6.945652e-03   p_cons 2.185000e-02   p_joint 2.406522e-03

Joint ci ratio: 1.217129e-01	ci left: 2.068067e-03	ci right 2.338129e-03	k: 1034	n:470000
Cons ci ratio: 3.821257e-02	ci left: 2.148136e-02	ci right 2.232030e-02	k: 10292	n:470000
KS ci ratio: 6.836444e-02	ci left: 6.709243e-03	ci right 7.186227e-03	k: 3264	n:470000
ZNF181   470000 perm   194 sec   (2420 perm/sec)   p_kst 6.944681e-03   p_cons 2.189787e-02   p_joint 2.200000e-03

Joint ci ratio: 1.206113e-01	ci left: 2.063365e-03	ci right 2.330201e-03	k: 1053	n:480000
Cons ci ratio: 3.967583e-02	ci left: 1.953566e-02	ci right 2.032849e-02	k: 9566	n:480000
KS ci ratio: 6.780712e-02	ci left: 6.680049e-03	ci right 7.150933e-03	k: 3318	n:480000
ZNF181   480000 perm   200 sec   (2395 perm/sec)   p_kst 6.912500e-03   p_cons 1.992917e-02   p_joint 2.193750e-03

Joint ci ratio: 1.193164e-01	ci left: 2.066786e-03	ci right 2.330992e-03	k: 1076	n:490000
Cons ci ratio: 3.925928e-02	ci left: 1.954919e-02	ci right 2.033405e-02	k: 9770	n:490000
KS ci ratio: 6.713306e-02	ci left: 6.678149e-03	ci right 7.144037e-03	k: 3385	n:490000
ZNF181   490000 perm   207 sec   (2370 perm/sec)   p_kst 6.908163e-03   p_cons 1.993878e-02   p_joint 2.195918e-03

Joint ci ratio: 1.185493e-01	ci left: 2.052616e-03	ci right 2.313206e-03	k: 1090	n:500000
Cons ci ratio: 3.883968e-02	ci left: 1.957807e-02	ci right 2.035550e-02	k: 9982	n:500000
KS ci ratio: 6.650780e-02	ci left: 6.670446e-03	ci right 7.131296e-03	k: 3449	n:500000
ZNF181   500000 perm   213 sec   (2346 perm/sec)   p_kst 6.898000e-03   p_cons 1.996400e-02   p_joint 2.180000e-03

Joint ci ratio: 1.234690e-01	ci left: 1.850733e-03	ci right 2.096156e-03	k: 1005	n:510000
Cons ci ratio: 3.847564e-02	ci left: 1.956313e-02	ci right 2.033253e-02	k: 10172	n:510000
KS ci ratio: 6.584312e-02	ci left: 6.674637e-03	ci right 7.130992e-03	k: 3519	n:510000
ZNF181   510000 perm   220 sec   (2323 perm/sec)   p_kst 6.900000e-03   p_cons 1.994510e-02   p_joint 1.970588e-03

Joint ci ratio: 1.267316e-01	ci left: 1.720127e-03	ci right 1.954710e-03	k: 954	n:520000
Cons ci ratio: 3.814607e-02	ci left: 1.952404e-02	ci right 2.028517e-02	k: 10349	n:520000
KS ci ratio: 6.521627e-02	ci left: 6.674905e-03	ci right 7.126769e-03	k: 3587	n:520000
ZNF181   520000 perm   226 sec   (2299 perm/sec)   p_kst 6.898077e-03   p_cons 1.990192e-02   p_joint 1.834615e-03

Joint ci ratio: 1.264027e-01	ci left: 1.696805e-03	ci right 1.927563e-03	k: 959	n:530000
Cons ci ratio: 3.782666e-02	ci left: 1.948457e-02	ci right 2.023767e-02	k: 10525	n:530000
KS ci ratio: 6.464260e-02	ci left: 6.667757e-03	ci right 7.115018e-03	k: 3651	n:530000
ZNF181   530000 perm   233 sec   (2276 perm/sec)   p_kst 6.888679e-03   p_cons 1.985849e-02   p_joint 1.809434e-03

Joint ci ratio: 1.266695e-01	ci left: 1.658208e-03	ci right 1.884228e-03	k: 955	n:540000
Cons ci ratio: 3.747050e-02	ci left: 1.949247e-02	ci right 2.023862e-02	k: 10726	n:540000
KS ci ratio: 6.413597e-02	ci left: 6.649956e-03	ci right 7.092397e-03	k: 3709	n:540000
ZNF181   540000 perm   240 sec   (2254 perm/sec)   p_kst 6.868519e-03   p_cons 1.986296e-02   p_joint 1.768519e-03

Joint ci ratio: 1.256876e-01	ci left: 1.654470e-03	ci right 1.878103e-03	k: 970	n:550000
Cons ci ratio: 3.715719e-02	ci left: 1.946587e-02	ci right 2.020465e-02	k: 10908	n:550000
KS ci ratio: 6.359859e-02	ci left: 6.641763e-03	ci right 7.079820e-03	k: 3772	n:550000
ZNF181   550000 perm   246 sec   (2232 perm/sec)   p_kst 6.858182e-03   p_cons 1.983273e-02   p_joint 1.763636e-03

Joint ci ratio: 1.261459e-01	ci left: 1.612818e-03	ci right 1.831674e-03	k: 963	n:560000
Cons ci ratio: 3.683975e-02	ci left: 1.945264e-02	ci right 2.018448e-02	k: 11097	n:560000
KS ci ratio: 6.288495e-02	ci left: 6.674306e-03	ci right 7.109390e-03	k: 3858	n:560000
ZNF181   560000 perm   253 sec   (2211 perm/sec)   p_kst 6.889286e-03   p_cons 1.981607e-02   p_joint 1.719643e-03

Joint ci ratio: 1.263449e-01	ci left: 1.579424e-03	ci right 1.794113e-03	k: 960	n:570000
Cons ci ratio: 3.650887e-02	ci left: 1.946251e-02	ci right 2.018800e-02	k: 11299	n:570000
KS ci ratio: 6.225840e-02	ci left: 6.691916e-03	ci right 7.123645e-03	k: 3936	n:570000
ZNF181   570000 perm   260 sec   (2190 perm/sec)   p_kst 6.905263e-03   p_cons 1.982281e-02   p_joint 1.684211e-03

Joint ci ratio: 1.287162e-01	ci left: 1.493769e-03	ci right 1.700916e-03	k: 925	n:580000
Cons ci ratio: 3.620923e-02	ci left: 1.944814e-02	ci right 2.016702e-02	k: 11487	n:580000
KS ci ratio: 6.170439e-02	ci left: 6.697055e-03	ci right 7.125134e-03	k: 4007	n:580000
ZNF181   580000 perm   267 sec   (2170 perm/sec)   p_kst 6.908621e-03   p_cons 1.980517e-02   p_joint 1.594828e-03

Joint ci ratio: 1.293491e-01	ci left: 1.453687e-03	ci right 1.656343e-03	k: 916	n:590000
Cons ci ratio: 3.588395e-02	ci left: 1.946955e-02	ci right 2.018263e-02	k: 11696	n:590000
KS ci ratio: 6.121783e-02	ci left: 6.690353e-03	ci right 7.114511e-03	k: 4071	n:590000
ZNF181   590000 perm   274 sec   (2150 perm/sec)   p_kst 6.900000e-03   p_cons 1.982373e-02   p_joint 1.552542e-03

Joint ci ratio: 1.287196e-01	ci left: 1.443974e-03	ci right 1.644222e-03	k: 925	n:600000
Cons ci ratio: 3.558557e-02	ci left: 1.947046e-02	ci right 2.017752e-02	k: 11893	n:600000
KS ci ratio: 6.068353e-02	ci left: 6.697019e-03	ci right 7.117764e-03	k: 4143	n:600000
ZNF181   600000 perm   282 sec   (2131 perm/sec)   p_kst 6.905000e-03   p_cons 1.982167e-02   p_joint 1.541667e-03

Joint ci ratio: 1.277576e-01	ci left: 1.442517e-03	ci right 1.640954e-03	k: 939	n:610000
Cons ci ratio: 3.529303e-02	ci left: 1.947299e-02	ci right 2.017421e-02	k: 12091	n:610000
KS ci ratio: 6.024217e-02	ci left: 6.685718e-03	ci right 7.102592e-03	k: 4204	n:610000
ZNF181   610000 perm   289 sec   (2112 perm/sec)   p_kst 6.891803e-03   p_cons 1.982131e-02   p_joint 1.539344e-03

Joint ci ratio: 1.269503e-01	ci left: 1.437988e-03	ci right 1.634458e-03	k: 951	n:620000
Cons ci ratio: 3.504251e-02	ci left: 1.943708e-02	ci right 2.013194e-02	k: 12265	n:620000
KS ci ratio: 5.981737e-02	ci left: 6.673204e-03	ci right 7.086262e-03	k: 4264	n:620000
ZNF181   620000 perm   296 sec   (2093 perm/sec)   p_kst 6.877419e-03   p_cons 1.978226e-02   p_joint 1.533871e-03

Joint ci ratio: 9.840087e-02	ci left: 2.389025e-03	ci right 2.637807e-03	k: 1582	n:630000
Cons ci ratio: 3.475878e-02	ci left: 1.944482e-02	ci right 2.013421e-02	k: 12466	n:630000
KS ci ratio: 5.938068e-02	ci left: 6.665789e-03	ci right 7.075273e-03	k: 4327	n:630000
ZNF181   630000 perm   304 sec   (2074 perm/sec)   p_kst 6.868254e-03   p_cons 1.978730e-02   p_joint 2.511111e-03

Outputting figure to mutsig2_images.part000000000195/ZNF181.4_1732_630000_0.0068683_0.019787_0.0025111.png
                gene_name: ZNF181
               theta_stop: 0.098 
                    nperm: 630000 
                     p_ks: 0.0069 
        ci_ks_bounds_left: 0.0067 
       ci_ks_bounds_right: 0.0071 
                   p_cons: 0.020 
      ci_cons_bounds_left: 0.019 
     ci_cons_bounds_right: 0.020 
                  p_joint: 0.0025 
     ci_joint_bounds_left: 0.0024 
    ci_joint_bounds_right: 0.0026 

Current progress: 36 percent done.
ZNF184
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.455374e-02	ci left: 2.606239e-01	ci right 2.781107e-01	k: 2693	n:10000
Cons ci ratio: 5.867464e-02	ci left: 2.994543e-01	ci right 3.176574e-01	k: 3085	n:10000
KS ci ratio: 9.265852e-02	ci left: 1.447212e-01	ci right 1.588823e-01	k: 1517	n:10000
ZNF184   10000 perm   2 sec   (5451 perm/sec)   p_kst 1.517000e-01   p_cons 3.085000e-01   p_joint 2.693000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF184.4_2276_10000_0.1517_0.3085_0.2693.png
                gene_name: ZNF184
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 37 percent done.
ZNF192
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.020604e-02	ci left: 6.178376e-01	ci right 6.368881e-01	k: 6274	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
ZNF192   10000 perm   2 sec   (5847 perm/sec)   p_kst 1   p_cons 6.274000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000195/ZNF192.4_1757_10000_1_0.6274_1.png
                gene_name: ZNF192
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 39 percent done.
ZNF197
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.257462e-02	ci left: 3.478011e-01	ci right 3.666822e-01	k: 3572	n:10000
Cons ci ratio: 4.633221e-02	ci left: 4.074111e-01	ci right 4.268372e-01	k: 4171	n:10000
KS ci ratio: 7.859457e-02	ci left: 1.913119e-01	ci right 2.070637e-01	k: 1991	n:10000
ZNF197   10000 perm   2 sec   (4752 perm/sec)   p_kst 1.991000e-01   p_cons 4.171000e-01   p_joint 3.572000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF197.4_3149_10000_0.1991_0.4171_0.3572.png
                gene_name: ZNF197
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 41 percent done.
ZNF227
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.740866e-02	ci left: 5.134552e-01	ci right 5.331312e-01	k: 5233	n:10000
Cons ci ratio: 5.765918e-02	ci left: 3.068925e-01	ci right 3.252147e-01	k: 3160	n:10000
KS ci ratio: 2.623654e-02	ci left: 6.814356e-01	ci right 6.996533e-01	k: 6906	n:10000
ZNF227   10000 perm   2 sec   (5096 perm/sec)   p_kst 6.906000e-01   p_cons 3.160000e-01   p_joint 5.233000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF227.4_2416_10000_0.6906_0.316_0.5233.png
                gene_name: ZNF227
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 42 percent done.
ZNF234
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.029588e-02	ci left: 3.682841e-01	ci right 3.873871e-01	k: 3778	n:10000
Cons ci ratio: 8.041207e-03	ci left: 9.556593e-01	ci right 9.634701e-01	k: 9597	n:10000
KS ci ratio: 9.382733e-02	ci left: 1.415836e-01	ci right 1.556218e-01	k: 1485	n:10000
ZNF234   10000 perm   2 sec   (5178 perm/sec)   p_kst 1.485000e-01   p_cons 9.597000e-01   p_joint 3.778000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF234.4_2119_10000_0.1485_0.9597_0.3778.png
                gene_name: ZNF234
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 44 percent done.
ZMYND8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.809000e-01	ci left: 5.020040e-03	ci right 8.277383e-03	k: 65	n:10000
Cons ci ratio: 1.898024e-02	ci left: 8.022727e-01	ci right 8.177463e-01	k: 8101	n:10000
KS ci ratio: 1.959510e+00	ci left: 6.187149e-05	ci right 8.764745e-04	k: 3	n:10000
ZMYND8   10000 perm   2 sec   (4654 perm/sec)   p_kst 3.000000e-04   p_cons 8.101000e-01   p_joint 6.500000e-03

Joint ci ratio: 6.923928e-01	ci left: 1.053385e-03	ci right 2.199386e-03	k: 31	n:20000
Cons ci ratio: 1.342725e-02	ci left: 8.044426e-01	ci right 8.153671e-01	k: 16199	n:20000
KS ci ratio: 1.481324e+00	ci left: 1.101024e-04	ci right 6.528585e-04	k: 6	n:20000
ZMYND8   20000 perm   5 sec   (4299 perm/sec)   p_kst 3.000000e-04   p_cons 8.099500e-01   p_joint 1.550000e-03

Joint ci ratio: 3.366144e-01	ci left: 3.743736e-03	ci right 5.287973e-03	k: 134	n:30000
Cons ci ratio: 1.104562e-02	ci left: 8.031267e-01	ci right 8.120803e-01	k: 24229	n:30000
KS ci ratio: 9.504544e-01	ci left: 3.048758e-04	ci right 8.659558e-04	k: 16	n:30000
ZMYND8   30000 perm   7 sec   (4146 perm/sec)   p_kst 5.333333e-04   p_cons 8.076333e-01   p_joint 4.466667e-03

Joint ci ratio: 4.378254e-01	ci left: 1.563928e-03	ci right 2.460840e-03	k: 79	n:40000
Cons ci ratio: 9.566777e-03	ci left: 8.037023e-01	ci right 8.114530e-01	k: 32304	n:40000
KS ci ratio: 8.551789e-01	ci left: 3.054389e-04	ci right 7.721043e-04	k: 20	n:40000
ZMYND8   40000 perm   10 sec   (4027 perm/sec)   p_kst 5.000000e-04   p_cons 8.076000e-01   p_joint 1.975000e-03

Joint ci ratio: 4.935574e-01	ci left: 9.508290e-04	ci right 1.589346e-03	k: 62	n:50000
Cons ci ratio: 8.532529e-03	ci left: 8.050030e-01	ci right 8.119211e-01	k: 40424	n:50000
KS ci ratio: 8.171803e-01	ci left: 2.757655e-04	ci right 6.660900e-04	k: 22	n:50000
ZMYND8   50000 perm   13 sec   (3940 perm/sec)   p_kst 4.400000e-04   p_cons 8.084800e-01   p_joint 1.240000e-03

Joint ci ratio: 5.235832e-01	ci left: 6.906311e-04	ci right 1.193003e-03	k: 55	n:60000
Cons ci ratio: 7.810372e-03	ci left: 8.044563e-01	ci right 8.107806e-01	k: 48458	n:60000
KS ci ratio: 7.542283e-01	ci left: 2.830866e-04	ci right 6.348697e-04	k: 26	n:60000
ZMYND8   60000 perm   16 sec   (3847 perm/sec)   p_kst 4.333333e-04   p_cons 8.076333e-01   p_joint 9.166667e-04

Joint ci ratio: 5.434004e-01	ci left: 5.425159e-04	ci right 9.578270e-04	k: 51	n:70000
Cons ci ratio: 7.212148e-03	ci left: 8.055077e-01	ci right 8.113524e-01	k: 56591	n:70000
KS ci ratio: 7.038918e-01	ci left: 2.891734e-04	ci right 6.117563e-04	k: 30	n:70000
ZMYND8   70000 perm   19 sec   (3773 perm/sec)   p_kst 4.285714e-04   p_cons 8.084429e-01   p_joint 7.285714e-04

Joint ci ratio: 7.277892e-01	ci left: 2.325847e-04	ci right 5.058080e-04	k: 28	n:80000
Cons ci ratio: 6.739922e-03	ci left: 8.059947e-01	ci right 8.114579e-01	k: 64699	n:80000
KS ci ratio: 6.721274e-01	ci left: 2.839625e-04	ci right 5.792550e-04	k: 33	n:80000
ZMYND8   80000 perm   22 sec   (3703 perm/sec)   p_kst 4.125000e-04   p_cons 8.087375e-01   p_joint 3.500000e-04

Joint ci ratio: 7.542870e-01	ci left: 1.887202e-04	ci right 4.232607e-04	k: 26	n:90000
Cons ci ratio: 6.353400e-03	ci left: 8.062042e-01	ci right 8.113537e-01	k: 72791	n:90000
KS ci ratio: 6.721437e-01	ci left: 2.524095e-04	ci right 5.148981e-04	k: 33	n:90000
ZMYND8   90000 perm   25 sec   (3634 perm/sec)   p_kst 3.666667e-04   p_cons 8.087889e-01   p_joint 2.888889e-04

Joint ci ratio: 6.822684e-01	ci left: 2.188897e-04	ci right 4.517148e-04	k: 32	n:100000
Cons ci ratio: 6.017204e-03	ci left: 8.068612e-01	ci right 8.117408e-01	k: 80931	n:100000
KS ci ratio: 6.196794e-01	ci left: 2.773424e-04	ci right 5.331047e-04	k: 39	n:100000
ZMYND8   100000 perm   28 sec   (3576 perm/sec)   p_kst 3.900000e-04   p_cons 8.093100e-01   p_joint 3.200000e-04

Joint ci ratio: 6.624925e-01	ci left: 2.140636e-04	ci right 4.318970e-04	k: 34	n:110000
Cons ci ratio: 5.732124e-03	ci left: 8.072489e-01	ci right 8.118984e-01	k: 89054	n:110000
KS ci ratio: 5.908413e-01	ci left: 2.829168e-04	ci right 5.265163e-04	k: 43	n:110000
ZMYND8   110000 perm   31 sec   (3517 perm/sec)   p_kst 3.909091e-04   p_cons 8.095818e-01   p_joint 3.090909e-04

Joint ci ratio: 6.275977e-01	ci left: 2.241016e-04	ci right 4.346241e-04	k: 38	n:120000
Cons ci ratio: 5.493697e-03	ci left: 8.070322e-01	ci right 8.114862e-01	k: 97112	n:120000
KS ci ratio: 5.598833e-01	ci left: 2.949427e-04	ci right 5.303074e-04	k: 48	n:120000
ZMYND8   120000 perm   35 sec   (3458 perm/sec)   p_kst 4.000000e-04   p_cons 8.092667e-01   p_joint 3.166667e-04

Joint ci ratio: 6.121022e-01	ci left: 2.198287e-04	ci right 4.189663e-04	k: 40	n:130000
Cons ci ratio: 5.280627e-03	ci left: 8.069761e-01	ci right 8.112563e-01	k: 105186	n:130000
KS ci ratio: 5.488000e-01	ci left: 2.854820e-04	ci right 5.070364e-04	k: 50	n:130000
ZMYND8   130000 perm   38 sec   (3408 perm/sec)   p_kst 3.846154e-04   p_cons 8.091231e-01   p_joint 3.076923e-04

Joint ci ratio: 5.102312e-01	ci left: 3.145991e-04	ci right 5.355279e-04	k: 58	n:140000
Cons ci ratio: 5.092918e-03	ci left: 8.067875e-01	ci right 8.109140e-01	k: 113240	n:140000
KS ci ratio: 5.102312e-01	ci left: 3.145991e-04	ci right 5.355279e-04	k: 58	n:140000
ZMYND8   140000 perm   42 sec   (3361 perm/sec)   p_kst 4.142857e-04   p_cons 8.088571e-01   p_joint 4.142857e-04

Joint ci ratio: 4.718024e-01	ci left: 3.520477e-04	ci right 5.746731e-04	k: 68	n:150000
Cons ci ratio: 4.920074e-03	ci left: 8.068676e-01	ci right 8.108538e-01	k: 121330	n:150000
KS ci ratio: 4.718024e-01	ci left: 3.520477e-04	ci right 5.746731e-04	k: 68	n:150000
ZMYND8   150000 perm   45 sec   (3312 perm/sec)   p_kst 4.533333e-04   p_cons 8.088667e-01   p_joint 4.533333e-04

Joint ci ratio: 4.555839e-01	ci left: 3.576437e-04	ci right 5.736322e-04	k: 73	n:160000
Cons ci ratio: 4.761978e-03	ci left: 8.070526e-01	ci right 8.109112e-01	k: 129438	n:160000
KS ci ratio: 4.555839e-01	ci left: 3.576437e-04	ci right 5.736322e-04	k: 73	n:160000
ZMYND8   160000 perm   49 sec   (3258 perm/sec)   p_kst 4.562500e-04   p_cons 8.089875e-01   p_joint 4.562500e-04

Joint ci ratio: 4.381649e-01	ci left: 3.679287e-04	ci right 5.791290e-04	k: 79	n:170000
Cons ci ratio: 4.622423e-03	ci left: 8.069343e-01	ci right 8.106787e-01	k: 137498	n:170000
KS ci ratio: 4.381649e-01	ci left: 3.679287e-04	ci right 5.791290e-04	k: 79	n:170000
ZMYND8   170000 perm   53 sec   (3213 perm/sec)   p_kst 4.647059e-04   p_cons 8.088118e-01   p_joint 4.647059e-04

Joint ci ratio: 4.327918e-01	ci left: 3.573805e-04	ci right 5.592783e-04	k: 81	n:180000
Cons ci ratio: 4.497038e-03	ci left: 8.066522e-01	ci right 8.102934e-01	k: 145526	n:180000
KS ci ratio: 4.327918e-01	ci left: 3.573805e-04	ci right 5.592783e-04	k: 81	n:180000
ZMYND8   180000 perm   57 sec   (3167 perm/sec)   p_kst 4.500000e-04   p_cons 8.084778e-01   p_joint 4.500000e-04

Joint ci ratio: 4.250875e-01	ci left: 3.526553e-04	ci right 5.473276e-04	k: 84	n:190000
Cons ci ratio: 4.374326e-03	ci left: 8.068977e-01	ci right 8.104403e-01	k: 153648	n:190000
KS ci ratio: 4.250875e-01	ci left: 3.526553e-04	ci right 5.473276e-04	k: 84	n:190000
ZMYND8   190000 perm   61 sec   (3116 perm/sec)   p_kst 4.421053e-04   p_cons 8.086737e-01   p_joint 4.421053e-04

Joint ci ratio: 4.177804e-01	ci left: 3.484314e-04	ci right 5.365436e-04	k: 87	n:200000
Cons ci ratio: 4.258586e-03	ci left: 8.073054e-01	ci right 8.107556e-01	k: 161807	n:200000
KS ci ratio: 4.177804e-01	ci left: 3.484314e-04	ci right 5.365436e-04	k: 87	n:200000
ZMYND8   200000 perm   65 sec   (3074 perm/sec)   p_kst 4.350000e-04   p_cons 8.090350e-01   p_joint 4.350000e-04

Joint ci ratio: 3.938810e-01	ci left: 3.788783e-04	ci right 5.686882e-04	k: 98	n:210000
Cons ci ratio: 4.160203e-03	ci left: 8.070302e-01	ci right 8.103993e-01	k: 169831	n:210000
KS ci ratio: 3.938810e-01	ci left: 3.788783e-04	ci right 5.686882e-04	k: 98	n:210000
ZMYND8   210000 perm   69 sec   (3031 perm/sec)   p_kst 4.666667e-04   p_cons 8.087190e-01   p_joint 4.666667e-04

Joint ci ratio: 3.861578e-01	ci left: 3.780554e-04	ci right 5.627950e-04	k: 102	n:220000
Cons ci ratio: 4.063847e-03	ci left: 8.071231e-01	ci right 8.104143e-01	k: 177930	n:220000
KS ci ratio: 3.861578e-01	ci left: 3.780554e-04	ci right 5.627950e-04	k: 102	n:220000
ZMYND8   220000 perm   74 sec   (2990 perm/sec)   p_kst 4.636364e-04   p_cons 8.087727e-01   p_joint 4.636364e-04

Joint ci ratio: 3.824647e-01	ci left: 3.694733e-04	ci right 5.478582e-04	k: 104	n:230000
Cons ci ratio: 3.972382e-03	ci left: 8.073264e-01	ci right 8.105441e-01	k: 186056	n:230000
KS ci ratio: 3.824647e-01	ci left: 3.694733e-04	ci right 5.478582e-04	k: 104	n:230000
ZMYND8   230000 perm   78 sec   (2952 perm/sec)   p_kst 4.521739e-04   p_cons 8.089391e-01   p_joint 4.521739e-04

Joint ci ratio: 3.753819e-01	ci left: 3.691579e-04	ci right 5.432776e-04	k: 108	n:240000
Cons ci ratio: 3.886562e-03	ci left: 8.075344e-01	ci right 8.106831e-01	k: 194187	n:240000
KS ci ratio: 3.753819e-01	ci left: 3.691579e-04	ci right 5.432776e-04	k: 108	n:240000
ZMYND8   240000 perm   82 sec   (2915 perm/sec)   p_kst 4.500000e-04   p_cons 8.091125e-01   p_joint 4.500000e-04

Joint ci ratio: 3.670572e-01	ci left: 3.725260e-04	ci right 5.434038e-04	k: 113	n:250000
Cons ci ratio: 3.804444e-03	ci left: 8.078588e-01	ci right 8.109420e-01	k: 202351	n:250000
KS ci ratio: 3.670572e-01	ci left: 3.725260e-04	ci right 5.434038e-04	k: 113	n:250000
ZMYND8   250000 perm   87 sec   (2875 perm/sec)   p_kst 4.520000e-04   p_cons 8.094040e-01   p_joint 4.520000e-04

Joint ci ratio: 3.592629e-01	ci left: 3.756744e-04	ci right 5.434815e-04	k: 118	n:260000
Cons ci ratio: 3.730054e-03	ci left: 8.079312e-01	ci right 8.109542e-01	k: 210456	n:260000
KS ci ratio: 3.592629e-01	ci left: 3.756744e-04	ci right 5.434815e-04	k: 118	n:260000
ZMYND8   260000 perm   92 sec   (2838 perm/sec)   p_kst 4.538462e-04   p_cons 8.094462e-01   p_joint 4.538462e-04

Joint ci ratio: 3.519449e-01	ci left: 3.786251e-04	ci right 5.435184e-04	k: 123	n:270000
Cons ci ratio: 3.659512e-03	ci left: 8.080285e-01	ci right 8.109945e-01	k: 218569	n:270000
KS ci ratio: 3.519449e-01	ci left: 3.786251e-04	ci right 5.435184e-04	k: 123	n:270000
ZMYND8   270000 perm   96 sec   (2803 perm/sec)   p_kst 4.555556e-04   p_cons 8.095148e-01   p_joint 4.555556e-04

Joint ci ratio: 3.424113e-01	ci left: 3.879236e-04	ci right 5.512776e-04	k: 130	n:280000
Cons ci ratio: 3.592535e-03	ci left: 8.081443e-01	ci right 8.110564e-01	k: 226689	n:280000
KS ci ratio: 3.424113e-01	ci left: 3.879236e-04	ci right 5.512776e-04	k: 130	n:280000
ZMYND8   280000 perm   101 sec   (2769 perm/sec)   p_kst 4.642857e-04   p_cons 8.096036e-01   p_joint 4.642857e-04

Joint ci ratio: 3.398286e-01	ci left: 3.808525e-04	ci right 5.397536e-04	k: 132	n:290000
Cons ci ratio: 3.527526e-03	ci left: 8.083910e-01	ci right 8.112511e-01	k: 234849	n:290000
KS ci ratio: 3.398286e-01	ci left: 3.808525e-04	ci right 5.397536e-04	k: 132	n:290000
ZMYND8   290000 perm   106 sec   (2736 perm/sec)   p_kst 4.551724e-04   p_cons 8.098241e-01   p_joint 4.551724e-04

Joint ci ratio: 3.360605e-01	ci left: 3.773088e-04	ci right 5.326075e-04	k: 135	n:300000
Cons ci ratio: 3.467944e-03	ci left: 8.084411e-01	ci right 8.112529e-01	k: 242955	n:300000
KS ci ratio: 3.360605e-01	ci left: 3.773088e-04	ci right 5.326075e-04	k: 135	n:300000
ZMYND8   300000 perm   111 sec   (2704 perm/sec)   p_kst 4.500000e-04   p_cons 8.098500e-01   p_joint 4.500000e-04

Joint ci ratio: 3.348337e-01	ci left: 3.680913e-04	ci right 5.189236e-04	k: 136	n:310000
Cons ci ratio: 3.414319e-03	ci left: 8.082134e-01	ci right 8.109808e-01	k: 250976	n:310000
KS ci ratio: 3.348337e-01	ci left: 3.680913e-04	ci right 5.189236e-04	k: 136	n:310000
ZMYND8   310000 perm   116 sec   (2672 perm/sec)   p_kst 4.387097e-04   p_cons 8.096000e-01   p_joint 4.387097e-04

Joint ci ratio: 3.277331e-01	ci left: 3.737794e-04	ci right 5.230108e-04	k: 142	n:320000
Cons ci ratio: 3.358810e-03	ci left: 8.083951e-01	ci right 8.111180e-01	k: 259123	n:320000
KS ci ratio: 3.277331e-01	ci left: 3.737794e-04	ci right 5.230108e-04	k: 142	n:320000
ZMYND8   320000 perm   121 sec   (2643 perm/sec)   p_kst 4.437500e-04   p_cons 8.097594e-01   p_joint 4.437500e-04

Joint ci ratio: 3.210659e-01	ci left: 3.791544e-04	ci right 5.268189e-04	k: 148	n:330000
Cons ci ratio: 3.307937e-03	ci left: 8.083778e-01	ci right 8.110592e-01	k: 267208	n:330000
KS ci ratio: 3.210659e-01	ci left: 3.791544e-04	ci right 5.268189e-04	k: 148	n:330000
ZMYND8   330000 perm   126 sec   (2614 perm/sec)   p_kst 4.484848e-04   p_cons 8.097212e-01   p_joint 4.484848e-04

Joint ci ratio: 3.189338e-01	ci left: 3.734126e-04	ci right 5.176777e-04	k: 150	n:340000
Cons ci ratio: 3.257814e-03	ci left: 8.085033e-01	ci right 8.111444e-01	k: 275341	n:340000
KS ci ratio: 3.189338e-01	ci left: 3.734126e-04	ci right 5.176777e-04	k: 150	n:340000
ZMYND8   340000 perm   131 sec   (2587 perm/sec)   p_kst 4.411765e-04   p_cons 8.098265e-01   p_joint 4.411765e-04

Joint ci ratio: 3.147918e-01	ci left: 3.732635e-04	ci right 5.152214e-04	k: 154	n:350000
Cons ci ratio: 3.209574e-03	ci left: 8.086534e-01	ci right 8.112558e-01	k: 283485	n:350000
KS ci ratio: 3.147918e-01	ci left: 3.732635e-04	ci right 5.152214e-04	k: 154	n:350000
ZMYND8   350000 perm   137 sec   (2558 perm/sec)   p_kst 4.400000e-04   p_cons 8.099571e-01   p_joint 4.400000e-04

Joint ci ratio: 3.563032e-01	ci left: 2.763739e-04	ci right 3.985720e-04	k: 120	n:360000
Cons ci ratio: 3.166155e-03	ci left: 8.085280e-01	ci right 8.110948e-01	k: 291533	n:360000
KS ci ratio: 3.178864e-01	ci left: 3.552227e-04	ci right 4.919178e-04	k: 151	n:360000
ZMYND8   360000 perm   142 sec   (2531 perm/sec)   p_kst 4.194444e-04   p_cons 8.098139e-01   p_joint 3.333333e-04

Joint ci ratio: 3.505558e-01	ci left: 2.787555e-04	ci right 3.995664e-04	k: 124	n:370000
Cons ci ratio: 3.123984e-03	ci left: 8.084558e-01	ci right 8.109880e-01	k: 299598	n:370000
KS ci ratio: 3.127833e-01	ci left: 3.580664e-04	ci right 4.932020e-04	k: 156	n:370000
ZMYND8   370000 perm   148 sec   (2505 perm/sec)   p_kst 4.216216e-04   p_cons 8.097243e-01   p_joint 3.351351e-04

Joint ci ratio: 3.051049e-01	ci left: 3.680648e-04	ci right 5.029020e-04	k: 164	n:380000
Cons ci ratio: 2.994365e-03	ci left: 8.172840e-01	ci right 8.197375e-01	k: 311035	n:380000
KS ci ratio: 3.051049e-01	ci left: 3.680648e-04	ci right 5.029020e-04	k: 164	n:380000
ZMYND8   380000 perm   153 sec   (2479 perm/sec)   p_kst 4.315789e-04   p_cons 8.185132e-01   p_joint 4.315789e-04

Joint ci ratio: 3.023690e-01	ci left: 3.657333e-04	ci right 4.982839e-04	k: 167	n:390000
Cons ci ratio: 2.955730e-03	ci left: 8.172995e-01	ci right 8.197214e-01	k: 319220	n:390000
KS ci ratio: 3.023690e-01	ci left: 3.657333e-04	ci right 4.982839e-04	k: 167	n:390000
ZMYND8   390000 perm   159 sec   (2453 perm/sec)   p_kst 4.282051e-04   p_cons 8.185128e-01   p_joint 4.282051e-04

Joint ci ratio: 2.979673e-01	ci left: 3.681488e-04	ci right 4.992652e-04	k: 172	n:400000
Cons ci ratio: 2.918405e-03	ci left: 8.173296e-01	ci right 8.197208e-01	k: 327411	n:400000
KS ci ratio: 2.979673e-01	ci left: 3.681488e-04	ci right 4.992652e-04	k: 172	n:400000
ZMYND8   400000 perm   165 sec   (2427 perm/sec)   p_kst 4.300000e-04   p_cons 8.185275e-01   p_joint 4.300000e-04

Joint ci ratio: 2.971110e-01	ci left: 3.614264e-04	ci right 4.897089e-04	k: 173	n:410000
Cons ci ratio: 2.882010e-03	ci left: 8.174048e-01	ci right 8.197663e-01	k: 335621	n:410000
KS ci ratio: 2.971110e-01	ci left: 3.614264e-04	ci right 4.897089e-04	k: 173	n:410000
ZMYND8   410000 perm   171 sec   (2403 perm/sec)   p_kst 4.219512e-04   p_cons 8.185878e-01   p_joint 4.219512e-04

Joint ci ratio: 2.937538e-01	ci left: 3.616391e-04	ci right 4.882767e-04	k: 177	n:420000
Cons ci ratio: 2.847924e-03	ci left: 8.173739e-01	ci right 8.197074e-01	k: 343788	n:420000
KS ci ratio: 2.937538e-01	ci left: 3.616391e-04	ci right 4.882767e-04	k: 177	n:420000
ZMYND8   420000 perm   177 sec   (2378 perm/sec)   p_kst 4.214286e-04   p_cons 8.185429e-01   p_joint 4.214286e-04

Joint ci ratio: 2.921180e-01	ci left: 3.575382e-04	ci right 4.819136e-04	k: 179	n:430000
Cons ci ratio: 2.814822e-03	ci left: 8.173657e-01	ci right 8.196719e-01	k: 351964	n:430000
KS ci ratio: 2.921180e-01	ci left: 3.575382e-04	ci right 4.819136e-04	k: 179	n:430000
ZMYND8   430000 perm   183 sec   (2354 perm/sec)   p_kst 4.162791e-04   p_cons 8.185209e-01   p_joint 4.162791e-04

Joint ci ratio: 2.913110e-01	ci left: 3.515186e-04	ci right 4.733998e-04	k: 180	n:440000
Cons ci ratio: 2.781804e-03	ci left: 8.174695e-01	ci right 8.197490e-01	k: 360189	n:440000
KS ci ratio: 2.913110e-01	ci left: 3.515186e-04	ci right 4.733998e-04	k: 180	n:440000
ZMYND8   440000 perm   189 sec   (2329 perm/sec)   p_kst 4.090909e-04   p_cons 8.186114e-01   p_joint 4.090909e-04

Joint ci ratio: 2.865989e-01	ci left: 3.560743e-04	ci right 4.771766e-04	k: 186	n:450000
Cons ci ratio: 2.749694e-03	ci left: 8.175935e-01	ci right 8.198469e-01	k: 368425	n:450000
KS ci ratio: 2.865989e-01	ci left: 3.560743e-04	ci right 4.771766e-04	k: 186	n:450000
ZMYND8   450000 perm   195 sec   (2306 perm/sec)   p_kst 4.133333e-04   p_cons 8.187222e-01   p_joint 4.133333e-04

Joint ci ratio: 2.821083e-01	ci left: 3.604471e-04	ci right 4.807742e-04	k: 192	n:460000
Cons ci ratio: 2.718730e-03	ci left: 8.177056e-01	ci right 8.199339e-01	k: 376658	n:460000
KS ci ratio: 2.821083e-01	ci left: 3.604471e-04	ci right 4.807742e-04	k: 192	n:460000
ZMYND8   460000 perm   201 sec   (2283 perm/sec)   p_kst 4.173913e-04   p_cons 8.188217e-01   p_joint 4.173913e-04

Joint ci ratio: 2.771266e-01	ci left: 3.666277e-04	ci right 4.864798e-04	k: 199	n:470000
Cons ci ratio: 2.690543e-03	ci left: 8.176190e-01	ci right 8.198239e-01	k: 384800	n:470000
KS ci ratio: 2.771266e-01	ci left: 3.666277e-04	ci right 4.864798e-04	k: 199	n:470000
ZMYND8   470000 perm   208 sec   (2260 perm/sec)   p_kst 4.234043e-04   p_cons 8.187234e-01   p_joint 4.234043e-04

Joint ci ratio: 2.737259e-01	ci left: 3.686870e-04	ci right 4.874790e-04	k: 204	n:480000
Cons ci ratio: 2.662972e-03	ci left: 8.175633e-01	ci right 8.197454e-01	k: 392955	n:480000
KS ci ratio: 2.737259e-01	ci left: 3.686870e-04	ci right 4.874790e-04	k: 204	n:480000
ZMYND8   480000 perm   215 sec   (2238 perm/sec)   p_kst 4.250000e-04   p_cons 8.186562e-01   p_joint 4.250000e-04

Joint ci ratio: 2.724010e-01	ci left: 3.649649e-04	ci right 4.818910e-04	k: 206	n:490000
Cons ci ratio: 2.635741e-03	ci left: 8.175652e-01	ci right 8.197249e-01	k: 401137	n:490000
KS ci ratio: 2.724010e-01	ci left: 3.649649e-04	ci right 4.818910e-04	k: 206	n:490000
ZMYND8   490000 perm   221 sec   (2215 perm/sec)   p_kst 4.204082e-04   p_cons 8.186469e-01   p_joint 4.204082e-04

Joint ci ratio: 2.710951e-01	ci left: 3.613930e-04	ci right 4.765252e-04	k: 208	n:500000
Cons ci ratio: 2.610067e-03	ci left: 8.174829e-01	ci right 8.196214e-01	k: 409277	n:500000
KS ci ratio: 2.710951e-01	ci left: 3.613930e-04	ci right 4.765252e-04	k: 208	n:500000
ZMYND8   500000 perm   228 sec   (2194 perm/sec)   p_kst 4.160000e-04   p_cons 8.185540e-01   p_joint 4.160000e-04

Joint ci ratio: 2.672852e-01	ci left: 3.652778e-04	ci right 4.797382e-04	k: 214	n:510000
Cons ci ratio: 2.585367e-03	ci left: 8.173765e-01	ci right 8.194944e-01	k: 417403	n:510000
KS ci ratio: 2.672852e-01	ci left: 3.652778e-04	ci right 4.797382e-04	k: 214	n:510000
ZMYND8   510000 perm   235 sec   (2173 perm/sec)   p_kst 4.196078e-04   p_cons 8.184373e-01   p_joint 4.196078e-04

Joint ci ratio: 2.654400e-01	ci left: 3.636372e-04	ci right 4.766661e-04	k: 217	n:520000
Cons ci ratio: 2.558935e-03	ci left: 8.175557e-01	ci right 8.196523e-01	k: 425675	n:520000
KS ci ratio: 2.654400e-01	ci left: 3.636372e-04	ci right 4.766661e-04	k: 217	n:520000
ZMYND8   520000 perm   242 sec   (2153 perm/sec)   p_kst 4.173077e-04   p_cons 8.186058e-01   p_joint 4.173077e-04

Joint ci ratio: 2.636325e-01	ci left: 3.620611e-04	ci right 4.737073e-04	k: 220	n:530000
Cons ci ratio: 2.534938e-03	ci left: 8.175353e-01	ci right 8.196122e-01	k: 433845	n:530000
KS ci ratio: 2.636325e-01	ci left: 3.620611e-04	ci right 4.737073e-04	k: 220	n:530000
ZMYND8   530000 perm   248 sec   (2133 perm/sec)   p_kst 4.150943e-04   p_cons 8.185755e-01   p_joint 4.150943e-04

Joint ci ratio: 2.624482e-01	ci left: 3.588157e-04	ci right 4.688825e-04	k: 222	n:540000
Cons ci ratio: 2.511399e-03	ci left: 8.175399e-01	ci right 8.195974e-01	k: 442028	n:540000
KS ci ratio: 2.624482e-01	ci left: 3.588157e-04	ci right 4.688825e-04	k: 222	n:540000
ZMYND8   540000 perm   255 sec   (2115 perm/sec)   p_kst 4.111111e-04   p_cons 8.185704e-01   p_joint 4.111111e-04

Joint ci ratio: 2.612796e-01	ci left: 3.556893e-04	ci right 4.642320e-04	k: 224	n:550000
Cons ci ratio: 2.488139e-03	ci left: 8.175881e-01	ci right 8.196267e-01	k: 450235	n:550000
KS ci ratio: 2.612796e-01	ci left: 3.556893e-04	ci right 4.642320e-04	k: 224	n:550000
ZMYND8   550000 perm   262 sec   (2096 perm/sec)   p_kst 4.072727e-04   p_cons 8.186091e-01   p_joint 4.072727e-04

Joint ci ratio: 2.584238e-01	ci left: 3.576849e-04	ci right 4.654509e-04	k: 229	n:560000
Cons ci ratio: 2.466596e-03	ci left: 8.175041e-01	ci right 8.195248e-01	k: 458369	n:560000
KS ci ratio: 2.584238e-01	ci left: 3.576849e-04	ci right 4.654509e-04	k: 229	n:560000
ZMYND8   560000 perm   270 sec   (2078 perm/sec)   p_kst 4.089286e-04   p_cons 8.185161e-01   p_joint 4.089286e-04

Joint ci ratio: 2.567550e-01	ci left: 3.563330e-04	ci right 4.628873e-04	k: 232	n:570000
Cons ci ratio: 2.445819e-03	ci left: 8.173967e-01	ci right 8.194001e-01	k: 466488	n:570000
KS ci ratio: 2.567550e-01	ci left: 3.563330e-04	ci right 4.628873e-04	k: 232	n:570000
ZMYND8   570000 perm   277 sec   (2059 perm/sec)   p_kst 4.070175e-04   p_cons 8.184000e-01   p_joint 4.070175e-04

Joint ci ratio: 2.551181e-01	ci left: 3.550300e-04	ci right 4.604101e-04	k: 235	n:580000
Cons ci ratio: 2.424361e-03	ci left: 8.174400e-01	ci right 8.194258e-01	k: 474692	n:580000
KS ci ratio: 2.551181e-01	ci left: 3.550300e-04	ci right 4.604101e-04	k: 235	n:580000
ZMYND8   580000 perm   284 sec   (2041 perm/sec)   p_kst 4.051724e-04   p_cons 8.184345e-01   p_joint 4.051724e-04

Joint ci ratio: 2.524576e-01	ci left: 3.569481e-04	ci right 4.616189e-04	k: 240	n:590000
Cons ci ratio: 2.403609e-03	ci left: 8.174631e-01	ci right 8.194320e-01	k: 482885	n:590000
KS ci ratio: 2.524576e-01	ci left: 3.569481e-04	ci right 4.616189e-04	k: 240	n:590000
ZMYND8   590000 perm   292 sec   (2024 perm/sec)   p_kst 4.067797e-04   p_cons 8.184492e-01   p_joint 4.067797e-04

Joint ci ratio: 2.514170e-01	ci left: 3.541218e-04	ci right 4.574687e-04	k: 242	n:600000
Cons ci ratio: 2.383047e-03	ci left: 8.175274e-01	ci right 8.194795e-01	k: 491103	n:600000
KS ci ratio: 2.514170e-01	ci left: 3.541218e-04	ci right 4.574687e-04	k: 242	n:600000
ZMYND8   600000 perm   299 sec   (2006 perm/sec)   p_kst 4.033333e-04   p_cons 8.185050e-01   p_joint 4.033333e-04

Joint ci ratio: 2.498795e-01	ci left: 3.529256e-04	ci right 4.551956e-04	k: 245	n:610000
Cons ci ratio: 2.363864e-03	ci left: 8.174812e-01	ci right 8.194175e-01	k: 499255	n:610000
KS ci ratio: 2.498795e-01	ci left: 3.529256e-04	ci right 4.551956e-04	k: 245	n:610000
ZMYND8   610000 perm   307 sec   (1989 perm/sec)   p_kst 4.016393e-04   p_cons 8.184508e-01   p_joint 4.016393e-04

Joint ci ratio: 2.488703e-01	ci left: 3.502574e-04	ci right 4.512808e-04	k: 247	n:620000
Cons ci ratio: 2.343559e-03	ci left: 8.176369e-01	ci right 8.195569e-01	k: 507531	n:620000
KS ci ratio: 2.488703e-01	ci left: 3.502574e-04	ci right 4.512808e-04	k: 247	n:620000
ZMYND8   620000 perm   314 sec   (1972 perm/sec)   p_kst 3.983871e-04   p_cons 8.185984e-01   p_joint 3.983871e-04

Joint ci ratio: 2.463986e-01	ci left: 3.521419e-04	ci right 4.525456e-04	k: 252	n:630000
Cons ci ratio: 2.324996e-03	ci left: 8.176303e-01	ci right 8.195350e-01	k: 515708	n:630000
KS ci ratio: 2.463986e-01	ci left: 3.521419e-04	ci right 4.525456e-04	k: 252	n:630000
ZMYND8   630000 perm   322 sec   (1956 perm/sec)   p_kst 4.000000e-04   p_cons 8.185841e-01   p_joint 4.000000e-04

Joint ci ratio: 2.449508e-01	ci left: 3.510386e-04	ci right 4.504501e-04	k: 255	n:640000
Cons ci ratio: 2.306528e-03	ci left: 8.176678e-01	ci right 8.195575e-01	k: 523913	n:640000
KS ci ratio: 2.449508e-01	ci left: 3.510386e-04	ci right 4.504501e-04	k: 255	n:640000
ZMYND8   640000 perm   330 sec   (1940 perm/sec)   p_kst 3.984375e-04   p_cons 8.186141e-01   p_joint 3.984375e-04

Joint ci ratio: 2.435282e-01	ci left: 3.499709e-04	ci right 4.484174e-04	k: 258	n:650000
Cons ci ratio: 2.289133e-03	ci left: 8.176209e-01	ci right 8.194962e-01	k: 532064	n:650000
KS ci ratio: 2.435282e-01	ci left: 3.499709e-04	ci right 4.484174e-04	k: 258	n:650000
ZMYND8   650000 perm   338 sec   (1924 perm/sec)   p_kst 3.969231e-04   p_cons 8.185600e-01   p_joint 3.969231e-04

Joint ci ratio: 2.421302e-01	ci left: 3.489372e-04	ci right 4.464448e-04	k: 261	n:660000
Cons ci ratio: 2.271836e-03	ci left: 8.176135e-01	ci right 8.194746e-01	k: 540240	n:660000
KS ci ratio: 2.421302e-01	ci left: 3.489372e-04	ci right 4.464448e-04	k: 261	n:660000
ZMYND8   660000 perm   346 sec   (1908 perm/sec)   p_kst 3.954545e-04   p_cons 8.185455e-01   p_joint 3.954545e-04

Joint ci ratio: 2.412116e-01	ci left: 3.465334e-04	ci right 4.429470e-04	k: 263	n:670000
Cons ci ratio: 2.320768e-03	ci left: 8.088821e-01	ci right 8.107630e-01	k: 542582	n:670000
KS ci ratio: 2.412116e-01	ci left: 3.465334e-04	ci right 4.429470e-04	k: 263	n:670000
ZMYND8   670000 perm   354 sec   (1893 perm/sec)   p_kst 3.925373e-04   p_cons 8.098239e-01   p_joint 3.925373e-04

Joint ci ratio: 2.473824e-01	ci left: 3.234893e-04	ci right 4.161483e-04	k: 250	n:680000
Cons ci ratio: 2.302807e-03	ci left: 8.090007e-01	ci right 8.108673e-01	k: 550756	n:680000
KS ci ratio: 2.473824e-01	ci left: 3.234893e-04	ci right 4.161483e-04	k: 250	n:680000
ZMYND8   680000 perm   362 sec   (1877 perm/sec)   p_kst 3.676471e-04   p_cons 8.099353e-01   p_joint 3.676471e-04

Joint ci ratio: 2.444772e-01	ci left: 3.269609e-04	ci right 4.193475e-04	k: 256	n:690000
Cons ci ratio: 2.285428e-03	ci left: 8.090927e-01	ci right 8.109453e-01	k: 558914	n:690000
KS ci ratio: 2.444772e-01	ci left: 3.269609e-04	ci right 4.193475e-04	k: 256	n:690000
ZMYND8   690000 perm   371 sec   (1862 perm/sec)   p_kst 3.710145e-04   p_cons 8.100203e-01   p_joint 3.710145e-04

Joint ci ratio: 2.435317e-01	ci left: 3.249724e-04	ci right 4.163884e-04	k: 258	n:700000
Cons ci ratio: 2.269194e-03	ci left: 8.090790e-01	ci right 8.109184e-01	k: 567000	n:700000
KS ci ratio: 2.435317e-01	ci left: 3.249724e-04	ci right 4.163884e-04	k: 258	n:700000
ZMYND8   700000 perm   379 sec   (1848 perm/sec)   p_kst 3.685714e-04   p_cons 8.100000e-01   p_joint 3.685714e-04

Joint ci ratio: 2.430634e-01	ci left: 3.217179e-04	ci right 4.120180e-04	k: 259	n:710000
Cons ci ratio: 2.252941e-03	ci left: 8.091152e-01	ci right 8.109415e-01	k: 575121	n:710000
KS ci ratio: 2.430634e-01	ci left: 3.217179e-04	ci right 4.120180e-04	k: 259	n:710000
ZMYND8   710000 perm   387 sec   (1833 perm/sec)   p_kst 3.647887e-04   p_cons 8.100296e-01   p_joint 3.647887e-04

Joint ci ratio: 2.407592e-01	ci left: 3.237731e-04	ci right 4.136601e-04	k: 264	n:720000
Cons ci ratio: 2.236910e-03	ci left: 8.091670e-01	ci right 8.109805e-01	k: 583254	n:720000
KS ci ratio: 2.407592e-01	ci left: 3.237731e-04	ci right 4.136601e-04	k: 264	n:720000
ZMYND8   720000 perm   396 sec   (1818 perm/sec)   p_kst 3.666667e-04   p_cons 8.100750e-01   p_joint 3.666667e-04

Joint ci ratio: 2.389624e-01	ci left: 3.244881e-04	ci right 4.138016e-04	k: 268	n:730000
Cons ci ratio: 2.221722e-03	ci left: 8.091476e-01	ci right 8.109486e-01	k: 591336	n:730000
KS ci ratio: 2.389624e-01	ci left: 3.244881e-04	ci right 4.138016e-04	k: 268	n:730000
ZMYND8   730000 perm   405 sec   (1804 perm/sec)   p_kst 3.671233e-04   p_cons 8.100493e-01   p_joint 3.671233e-04

Joint ci ratio: 2.385199e-01	ci left: 3.213736e-04	ci right 4.096418e-04	k: 269	n:740000
Cons ci ratio: 2.206615e-03	ci left: 8.091598e-01	ci right 8.109486e-01	k: 599441	n:740000
KS ci ratio: 2.385199e-01	ci left: 3.213736e-04	ci right 4.096418e-04	k: 269	n:740000
ZMYND8   740000 perm   413 sec   (1790 perm/sec)   p_kst 3.635135e-04   p_cons 8.100554e-01   p_joint 3.635135e-04

Joint ci ratio: 2.385205e-01	ci left: 3.170885e-04	ci right 4.041800e-04	k: 269	n:750000
Cons ci ratio: 2.192088e-03	ci left: 8.091330e-01	ci right 8.109099e-01	k: 607517	n:750000
KS ci ratio: 2.385205e-01	ci left: 3.170885e-04	ci right 4.041800e-04	k: 269	n:750000
ZMYND8   750000 perm   422 sec   (1777 perm/sec)   p_kst 3.586667e-04   p_cons 8.100227e-01   p_joint 3.586667e-04

Joint ci ratio: 2.363420e-01	ci left: 3.191039e-04	ci right 4.058314e-04	k: 274	n:760000
Cons ci ratio: 2.177416e-03	ci left: 8.091676e-01	ci right 8.109327e-01	k: 615639	n:760000
KS ci ratio: 2.363420e-01	ci left: 3.191039e-04	ci right 4.058314e-04	k: 274	n:760000
ZMYND8   760000 perm   431 sec   (1763 perm/sec)   p_kst 3.605263e-04   p_cons 8.100513e-01   p_joint 3.605263e-04

Joint ci ratio: 2.354875e-01	ci left: 3.174036e-04	ci right 4.033116e-04	k: 276	n:770000
Cons ci ratio: 2.162980e-03	ci left: 8.092091e-01	ci right 8.109626e-01	k: 623767	n:770000
KS ci ratio: 2.354875e-01	ci left: 3.174036e-04	ci right 4.033116e-04	k: 276	n:770000
ZMYND8   770000 perm   440 sec   (1750 perm/sec)   p_kst 3.584416e-04   p_cons 8.100870e-01   p_joint 3.584416e-04

Joint ci ratio: 2.350639e-01	ci left: 3.145407e-04	ci right 3.994985e-04	k: 277	n:780000
Cons ci ratio: 2.149105e-03	ci left: 8.092098e-01	ci right 8.109520e-01	k: 631864	n:780000
KS ci ratio: 2.350639e-01	ci left: 3.145407e-04	ci right 3.994985e-04	k: 277	n:780000
ZMYND8   780000 perm   449 sec   (1736 perm/sec)   p_kst 3.551282e-04   p_cons 8.100821e-01   p_joint 3.551282e-04

Joint ci ratio: 2.342231e-01	ci left: 3.129420e-04	ci right 3.971218e-04	k: 279	n:790000
Cons ci ratio: 2.135958e-03	ci left: 8.091433e-01	ci right 8.108747e-01	k: 639908	n:790000
KS ci ratio: 2.342231e-01	ci left: 3.129420e-04	ci right 3.971218e-04	k: 279	n:790000
ZMYND8   790000 perm   458 sec   (1723 perm/sec)   p_kst 3.531646e-04   p_cons 8.100101e-01   p_joint 3.531646e-04

Joint ci ratio: 2.305464e-01	ci left: 3.196254e-04	ci right 4.040613e-04	k: 288	n:800000
Cons ci ratio: 2.123085e-03	ci left: 8.090735e-01	ci right 8.107943e-01	k: 647948	n:800000
KS ci ratio: 2.305464e-01	ci left: 3.196254e-04	ci right 4.040613e-04	k: 288	n:800000
ZMYND8   800000 perm   468 sec   (1710 perm/sec)   p_kst 3.600000e-04   p_cons 8.099350e-01   p_joint 3.600000e-04

Joint ci ratio: 2.281895e-01	ci left: 3.226613e-04	ci right 4.069051e-04	k: 294	n:810000
Cons ci ratio: 2.109865e-03	ci left: 8.090895e-01	ci right 8.107996e-01	k: 656056	n:810000
KS ci ratio: 2.281895e-01	ci left: 3.226613e-04	ci right 4.069051e-04	k: 294	n:810000
ZMYND8   810000 perm   477 sec   (1697 perm/sec)   p_kst 3.629630e-04   p_cons 8.099457e-01   p_joint 3.629630e-04

Joint ci ratio: 2.274201e-01	ci left: 3.210262e-04	ci right 4.045209e-04	k: 296	n:820000
Cons ci ratio: 2.096583e-03	ci left: 8.091504e-01	ci right 8.108498e-01	k: 664201	n:820000
KS ci ratio: 2.274201e-01	ci left: 3.210262e-04	ci right 4.045209e-04	k: 296	n:820000
ZMYND8   820000 perm   487 sec   (1685 perm/sec)   p_kst 3.609756e-04   p_cons 8.100012e-01   p_joint 3.609756e-04

Joint ci ratio: 2.255295e-01	ci left: 3.228408e-04	ci right 4.060124e-04	k: 301	n:830000
Cons ci ratio: 2.084485e-03	ci left: 8.090711e-01	ci right 8.107605e-01	k: 672231	n:830000
KS ci ratio: 2.255295e-01	ci left: 3.228408e-04	ci right 4.060124e-04	k: 301	n:830000
ZMYND8   830000 perm   496 sec   (1673 perm/sec)   p_kst 3.626506e-04   p_cons 8.099169e-01   p_joint 3.626506e-04

Joint ci ratio: 2.240505e-01	ci left: 3.234913e-04	ci right 4.062085e-04	k: 305	n:840000
Cons ci ratio: 2.072178e-03	ci left: 8.090557e-01	ci right 8.107351e-01	k: 680313	n:840000
KS ci ratio: 2.240505e-01	ci left: 3.234913e-04	ci right 4.062085e-04	k: 305	n:840000
ZMYND8   840000 perm   506 sec   (1661 perm/sec)   p_kst 3.630952e-04   p_cons 8.098964e-01   p_joint 3.630952e-04

Joint ci ratio: 2.233221e-01	ci left: 3.219066e-04	ci right 4.039142e-04	k: 307	n:850000
Cons ci ratio: 2.060055e-03	ci left: 8.090453e-01	ci right 8.107149e-01	k: 688399	n:850000
KS ci ratio: 2.233221e-01	ci left: 3.219066e-04	ci right 4.039142e-04	k: 307	n:850000
ZMYND8   850000 perm   515 sec   (1649 perm/sec)   p_kst 3.611765e-04   p_cons 8.098812e-01   p_joint 3.611765e-04

Joint ci ratio: 2.211779e-01	ci left: 3.247519e-04	ci right 4.065819e-04	k: 313	n:860000
Cons ci ratio: 2.047794e-03	ci left: 8.090877e-01	ci right 8.107474e-01	k: 696530	n:860000
KS ci ratio: 2.211779e-01	ci left: 3.247519e-04	ci right 4.065819e-04	k: 313	n:860000
ZMYND8   860000 perm   525 sec   (1637 perm/sec)   p_kst 3.639535e-04   p_cons 8.099186e-01   p_joint 3.639535e-04

Joint ci ratio: 2.194375e-01	ci left: 3.264492e-04	ci right 4.079722e-04	k: 318	n:870000
Cons ci ratio: 2.035985e-03	ci left: 8.090935e-01	ci right 8.107436e-01	k: 704630	n:870000
KS ci ratio: 2.194375e-01	ci left: 3.264492e-04	ci right 4.079722e-04	k: 318	n:870000
ZMYND8   870000 perm   535 sec   (1626 perm/sec)   p_kst 3.655172e-04   p_cons 8.099195e-01   p_joint 3.655172e-04

Joint ci ratio: 2.187530e-01	ci left: 3.248875e-04	ci right 4.057335e-04	k: 320	n:880000
Cons ci ratio: 2.025035e-03	ci left: 8.089989e-01	ci right 8.106399e-01	k: 712642	n:880000
KS ci ratio: 2.187530e-01	ci left: 3.248875e-04	ci right 4.057335e-04	k: 320	n:880000
ZMYND8   880000 perm   545 sec   (1614 perm/sec)   p_kst 3.636364e-04   p_cons 8.098205e-01   p_joint 3.636364e-04

Joint ci ratio: 2.233240e-01	ci left: 3.074386e-04	ci right 3.857611e-04	k: 307	n:890000
Cons ci ratio: 2.013319e-03	ci left: 8.090506e-01	ci right 8.106822e-01	k: 720782	n:890000
KS ci ratio: 2.233240e-01	ci left: 3.074386e-04	ci right 3.857611e-04	k: 307	n:890000
ZMYND8   890000 perm   555 sec   (1603 perm/sec)   p_kst 3.449438e-04   p_cons 8.098674e-01   p_joint 3.449438e-04

Joint ci ratio: 2.233244e-01	ci left: 3.040226e-04	ci right 3.814749e-04	k: 307	n:900000
Cons ci ratio: 2.002137e-03	ci left: 8.090500e-01	ci right 8.106725e-01	k: 728876	n:900000
KS ci ratio: 2.233244e-01	ci left: 3.040226e-04	ci right 3.814749e-04	k: 307	n:900000
ZMYND8   900000 perm   565 sec   (1593 perm/sec)   p_kst 3.411111e-04   p_cons 8.098622e-01   p_joint 3.411111e-04

Joint ci ratio: 2.208286e-01	ci left: 3.079462e-04	ci right 3.854023e-04	k: 314	n:910000
Cons ci ratio: 1.991735e-03	ci left: 8.089569e-01	ci right 8.105708e-01	k: 736886	n:910000
KS ci ratio: 2.208286e-01	ci left: 3.079462e-04	ci right 3.854023e-04	k: 314	n:910000
ZMYND8   910000 perm   575 sec   (1582 perm/sec)   p_kst 3.450549e-04   p_cons 8.097648e-01   p_joint 3.450549e-04

Joint ci ratio: 2.187548e-01	ci left: 3.107617e-04	ci right 3.880933e-04	k: 320	n:920000
Cons ci ratio: 1.981053e-03	ci left: 8.089345e-01	ci right 8.105397e-01	k: 744959	n:920000
KS ci ratio: 2.187548e-01	ci left: 3.107617e-04	ci right 3.880933e-04	k: 320	n:920000
ZMYND8   920000 perm   586 sec   (1571 perm/sec)   p_kst 3.478261e-04   p_cons 8.097380e-01   p_joint 3.478261e-04

Joint ci ratio: 2.177397e-01	ci left: 3.104697e-04	ci right 3.873221e-04	k: 323	n:930000
Cons ci ratio: 1.970747e-03	ci left: 8.088802e-01	ci right 8.104770e-01	k: 753002	n:930000
KS ci ratio: 2.177397e-01	ci left: 3.104697e-04	ci right 3.873221e-04	k: 323	n:930000
ZMYND8   930000 perm   596 sec   (1560 perm/sec)   p_kst 3.473118e-04   p_cons 8.096796e-01   p_joint 3.473118e-04

Joint ci ratio: 2.174048e-01	ci left: 3.081726e-04	ci right 3.843234e-04	k: 324	n:940000
Cons ci ratio: 1.960174e-03	ci left: 8.088943e-01	ci right 8.104825e-01	k: 761108	n:940000
KS ci ratio: 2.174048e-01	ci left: 3.081726e-04	ci right 3.843234e-04	k: 324	n:940000
ZMYND8   940000 perm   607 sec   (1550 perm/sec)   p_kst 3.446809e-04   p_cons 8.096894e-01   p_joint 3.446809e-04

Joint ci ratio: 2.164083e-01	ci left: 3.079151e-04	ci right 3.836071e-04	k: 327	n:950000
Cons ci ratio: 1.949883e-03	ci left: 8.088902e-01	ci right 8.104700e-01	k: 769197	n:950000
KS ci ratio: 2.164083e-01	ci left: 3.079151e-04	ci right 3.836071e-04	k: 327	n:950000
ZMYND8   950000 perm   617 sec   (1539 perm/sec)   p_kst 3.442105e-04   p_cons 8.096811e-01   p_joint 3.442105e-04

Joint ci ratio: 2.160794e-01	ci left: 3.056928e-04	ci right 3.807092e-04	k: 328	n:960000
Cons ci ratio: 1.939988e-03	ci left: 8.088486e-01	ci right 8.104203e-01	k: 777250	n:960000
KS ci ratio: 2.160794e-01	ci left: 3.056928e-04	ci right 3.807092e-04	k: 328	n:960000
ZMYND8   960000 perm   628 sec   (1530 perm/sec)   p_kst 3.416667e-04   p_cons 8.096354e-01   p_joint 3.416667e-04

Joint ci ratio: 2.151010e-01	ci left: 3.054671e-04	ci right 3.800439e-04	k: 331	n:970000
Cons ci ratio: 1.929654e-03	ci left: 8.089019e-01	ci right 8.104653e-01	k: 785394	n:970000
KS ci ratio: 2.151010e-01	ci left: 3.054671e-04	ci right 3.800439e-04	k: 331	n:970000
ZMYND8   970000 perm   638 sec   (1520 perm/sec)   p_kst 3.412371e-04   p_cons 8.096845e-01   p_joint 3.412371e-04

Joint ci ratio: 2.138168e-01	ci left: 3.062126e-04	ci right 3.804664e-04	k: 335	n:980000
Cons ci ratio: 1.919586e-03	ci left: 8.089378e-01	ci right 8.104931e-01	k: 793522	n:980000
KS ci ratio: 2.138168e-01	ci left: 3.062126e-04	ci right 3.804664e-04	k: 335	n:980000
ZMYND8   980000 perm   649 sec   (1510 perm/sec)   p_kst 3.418367e-04   p_cons 8.097163e-01   p_joint 3.418367e-04

Joint ci ratio: 2.134996e-01	ci left: 3.040755e-04	ci right 3.776875e-04	k: 336	n:990000
Cons ci ratio: 1.909761e-03	ci left: 8.089587e-01	ci right 8.105061e-01	k: 801636	n:990000
KS ci ratio: 2.134996e-01	ci left: 3.040755e-04	ci right 3.776875e-04	k: 336	n:990000
ZMYND8   990000 perm   660 sec   (1499 perm/sec)   p_kst 3.393939e-04   p_cons 8.097333e-01   p_joint 3.393939e-04

Joint ci ratio: 2.128690e-01	ci left: 3.029280e-04	ci right 3.760172e-04	k: 338	n:1000000
Cons ci ratio: 1.899931e-03	ci left: 8.090044e-01	ci right 8.105438e-01	k: 809775	n:1000000
KS ci ratio: 2.128690e-01	ci left: 3.029280e-04	ci right 3.760172e-04	k: 338	n:1000000
ZMYND8   1000000 perm   671 sec   (1490 perm/sec)   p_kst 3.380000e-04   p_cons 8.097750e-01   p_joint 3.380000e-04

Joint ci ratio: 2.119333e-01	ci left: 3.027410e-04	ci right 3.754224e-04	k: 341	n:1010000
Cons ci ratio: 1.890343e-03	ci left: 8.090342e-01	ci right 8.105660e-01	k: 817899	n:1010000
KS ci ratio: 2.119333e-01	ci left: 3.027410e-04	ci right 3.754224e-04	k: 341	n:1010000
ZMYND8   1010000 perm   682 sec   (1480 perm/sec)   p_kst 3.376238e-04   p_cons 8.098010e-01   p_joint 3.376238e-04

Joint ci ratio: 2.113165e-01	ci left: 3.016298e-04	ci right 3.738063e-04	k: 343	n:1020000
Cons ci ratio: 1.880688e-03	ci left: 8.090979e-01	ci right 8.106219e-01	k: 826058	n:1020000
KS ci ratio: 2.113165e-01	ci left: 3.016298e-04	ci right 3.738063e-04	k: 343	n:1020000
ZMYND8   1020000 perm   693 sec   (1471 perm/sec)   p_kst 3.362745e-04   p_cons 8.098608e-01   p_joint 3.362745e-04

Joint ci ratio: 2.100985e-01	ci left: 3.023799e-04	ci right 3.742652e-04	k: 347	n:1030000
Cons ci ratio: 1.871705e-03	ci left: 8.090738e-01	ci right 8.105905e-01	k: 834128	n:1030000
KS ci ratio: 2.100985e-01	ci left: 3.023799e-04	ci right 3.742652e-04	k: 347	n:1030000
ZMYND8   1030000 perm   704 sec   (1462 perm/sec)   p_kst 3.368932e-04   p_cons 8.098330e-01   p_joint 3.368932e-04

Joint ci ratio: 2.083101e-01	ci left: 3.049395e-04	ci right 3.767375e-04	k: 353	n:1040000
Cons ci ratio: 1.862617e-03	ci left: 8.090887e-01	ci right 8.105980e-01	k: 842238	n:1040000
KS ci ratio: 2.083101e-01	ci left: 3.049395e-04	ci right 3.767375e-04	k: 353	n:1040000
ZMYND8   1040000 perm   716 sec   (1453 perm/sec)   p_kst 3.394231e-04   p_cons 8.098442e-01   p_joint 3.394231e-04

Joint ci ratio: 2.074330e-01	ci left: 3.047437e-04	ci right 3.761552e-04	k: 356	n:1050000
Cons ci ratio: 1.853316e-03	ci left: 8.091606e-01	ci right 8.106625e-01	k: 850408	n:1050000
KS ci ratio: 2.074330e-01	ci left: 3.047437e-04	ci right 3.761552e-04	k: 356	n:1050000
ZMYND8   1050000 perm   727 sec   (1444 perm/sec)   p_kst 3.390476e-04   p_cons 8.099124e-01   p_joint 3.390476e-04

Joint ci ratio: 2.059953e-01	ci left: 3.063416e-04	ci right 3.775673e-04	k: 361	n:1060000
Cons ci ratio: 1.844509e-03	ci left: 8.091716e-01	ci right 8.106664e-01	k: 858515	n:1060000
KS ci ratio: 2.059953e-01	ci left: 3.063416e-04	ci right 3.775673e-04	k: 361	n:1060000
ZMYND8   1060000 perm   739 sec   (1435 perm/sec)   p_kst 3.405660e-04   p_cons 8.099198e-01   p_joint 3.405660e-04

Joint ci ratio: 2.048665e-01	ci left: 3.070246e-04	ci right 3.779690e-04	k: 365	n:1070000
Cons ci ratio: 1.835698e-03	ci left: 8.092039e-01	ci right 8.106916e-01	k: 866645	n:1070000
KS ci ratio: 2.048665e-01	ci left: 3.070246e-04	ci right 3.779690e-04	k: 365	n:1070000
ZMYND8   1070000 perm   750 sec   (1426 perm/sec)   p_kst 3.411215e-04   p_cons 8.099486e-01   p_joint 3.411215e-04

Joint ci ratio: 2.037561e-01	ci left: 3.076960e-04	ci right 3.783622e-04	k: 369	n:1080000
Cons ci ratio: 1.827116e-03	ci left: 8.092180e-01	ci right 8.106988e-01	k: 874756	n:1080000
KS ci ratio: 2.037561e-01	ci left: 3.076960e-04	ci right 3.783622e-04	k: 369	n:1080000
ZMYND8   1080000 perm   762 sec   (1417 perm/sec)   p_kst 3.416667e-04   p_cons 8.099593e-01   p_joint 3.416667e-04

Joint ci ratio: 2.029351e-01	ci left: 3.074853e-04	ci right 3.777833e-04	k: 372	n:1090000
Cons ci ratio: 1.818388e-03	ci left: 8.092770e-01	ci right 8.107508e-01	k: 882916	n:1090000
KS ci ratio: 2.029351e-01	ci left: 3.074853e-04	ci right 3.777833e-04	k: 372	n:1090000
ZMYND8   1090000 perm   774 sec   (1409 perm/sec)   p_kst 3.412844e-04   p_cons 8.100147e-01   p_joint 3.412844e-04

Joint ci ratio: 2.015883e-01	ci left: 3.090053e-04	ci right 3.791242e-04	k: 377	n:1100000
Cons ci ratio: 1.810281e-03	ci left: 8.092501e-01	ci right 8.107173e-01	k: 890983	n:1100000
KS ci ratio: 2.015883e-01	ci left: 3.090053e-04	ci right 3.791242e-04	k: 377	n:1100000
ZMYND8   1100000 perm   786 sec   (1400 perm/sec)   p_kst 3.427273e-04   p_cons 8.099845e-01   p_joint 3.427273e-04

Joint ci ratio: 2.002680e-01	ci left: 3.104993e-04	ci right 3.804394e-04	k: 382	n:1110000
Cons ci ratio: 1.801912e-03	ci left: 8.092870e-01	ci right 8.107474e-01	k: 899120	n:1110000
KS ci ratio: 2.002680e-01	ci left: 3.104993e-04	ci right 3.804394e-04	k: 382	n:1110000
ZMYND8   1110000 perm   798 sec   (1392 perm/sec)   p_kst 3.441441e-04   p_cons 8.100180e-01   p_joint 3.441441e-04

Joint ci ratio: 1.992303e-01	ci left: 3.111198e-04	ci right 3.807925e-04	k: 386	n:1120000
Cons ci ratio: 1.793523e-03	ci left: 8.093464e-01	ci right 8.108002e-01	k: 907283	n:1120000
KS ci ratio: 1.992303e-01	ci left: 3.111198e-04	ci right 3.807925e-04	k: 386	n:1120000
ZMYND8   1120000 perm   810 sec   (1383 perm/sec)   p_kst 3.446429e-04   p_cons 8.100741e-01   p_joint 3.446429e-04

Joint ci ratio: 1.987176e-01	ci left: 3.100483e-04	ci right 3.792806e-04	k: 388	n:1130000
Cons ci ratio: 1.785491e-03	ci left: 8.093632e-01	ci right 8.108104e-01	k: 915399	n:1130000
KS ci ratio: 1.987176e-01	ci left: 3.100483e-04	ci right 3.792806e-04	k: 388	n:1130000
ZMYND8   1130000 perm   822 sec   (1375 perm/sec)   p_kst 3.433628e-04   p_cons 8.100876e-01   p_joint 3.433628e-04

Joint ci ratio: 1.984629e-01	ci left: 3.081621e-04	ci right 3.768744e-04	k: 389	n:1140000
Cons ci ratio: 1.777566e-03	ci left: 8.093797e-01	ci right 8.108205e-01	k: 923515	n:1140000
KS ci ratio: 1.984629e-01	ci left: 3.081621e-04	ci right 3.768744e-04	k: 389	n:1140000
ZMYND8   1140000 perm   834 sec   (1367 perm/sec)   p_kst 3.412281e-04   p_cons 8.101009e-01   p_joint 3.412281e-04

Joint ci ratio: 1.974528e-01	ci left: 3.087883e-04	ci right 3.772476e-04	k: 393	n:1150000
Cons ci ratio: 1.769766e-03	ci left: 8.093924e-01	ci right 8.108269e-01	k: 931627	n:1150000
KS ci ratio: 1.974528e-01	ci left: 3.087883e-04	ci right 3.772476e-04	k: 393	n:1150000
ZMYND8   1150000 perm   846 sec   (1359 perm/sec)   p_kst 3.417391e-04   p_cons 8.101104e-01   p_joint 3.417391e-04

Joint ci ratio: 1.969537e-01	ci left: 3.077654e-04	ci right 3.758047e-04	k: 395	n:1160000
Cons ci ratio: 1.762502e-03	ci left: 8.093289e-01	ci right 8.107575e-01	k: 939651	n:1160000
KS ci ratio: 1.969537e-01	ci left: 3.077654e-04	ci right 3.758047e-04	k: 395	n:1160000
ZMYND8   1160000 perm   859 sec   (1351 perm/sec)   p_kst 3.405172e-04   p_cons 8.100440e-01   p_joint 3.405172e-04

Joint ci ratio: 1.967057e-01	ci left: 3.059474e-04	ci right 3.734895e-04	k: 396	n:1170000
Cons ci ratio: 1.755209e-03	ci left: 8.092871e-01	ci right 8.107097e-01	k: 947699	n:1170000
KS ci ratio: 1.967057e-01	ci left: 3.059474e-04	ci right 3.734895e-04	k: 396	n:1170000
ZMYND8   1170000 perm   871 sec   (1343 perm/sec)   p_kst 3.384615e-04   p_cons 8.099991e-01   p_joint 3.384615e-04

Joint ci ratio: 1.962122e-01	ci left: 3.049662e-04	ci right 3.721025e-04	k: 398	n:1180000
Cons ci ratio: 1.747607e-03	ci left: 8.093164e-01	ci right 8.107329e-01	k: 955830	n:1180000
KS ci ratio: 1.962122e-01	ci left: 3.049662e-04	ci right 3.721025e-04	k: 398	n:1180000
ZMYND8   1180000 perm   883 sec   (1336 perm/sec)   p_kst 3.372881e-04   p_cons 8.100254e-01   p_joint 3.372881e-04

Joint ci ratio: 1.954787e-01	ci left: 3.048008e-04	ci right 3.716201e-04	k: 401	n:1190000
Cons ci ratio: 1.739993e-03	ci left: 8.093647e-01	ci right 8.107750e-01	k: 963984	n:1190000
KS ci ratio: 1.954787e-01	ci left: 3.048008e-04	ci right 3.716201e-04	k: 401	n:1190000
ZMYND8   1190000 perm   896 sec   (1328 perm/sec)   p_kst 3.369748e-04   p_cons 8.100706e-01   p_joint 3.369748e-04

Joint ci ratio: 1.947534e-01	ci left: 3.046387e-04	ci right 3.711452e-04	k: 404	n:1200000
Cons ci ratio: 1.732811e-03	ci left: 8.093528e-01	ci right 8.107573e-01	k: 972067	n:1200000
KS ci ratio: 1.947534e-01	ci left: 3.046387e-04	ci right 3.711452e-04	k: 404	n:1200000
ZMYND8   1200000 perm   908 sec   (1321 perm/sec)   p_kst 3.366667e-04   p_cons 8.100558e-01   p_joint 3.366667e-04

Joint ci ratio: 1.940361e-01	ci left: 3.044797e-04	ci right 3.706778e-04	k: 407	n:1210000
Cons ci ratio: 1.725448e-03	ci left: 8.093892e-01	ci right 8.107878e-01	k: 980208	n:1210000
KS ci ratio: 1.940361e-01	ci left: 3.044797e-04	ci right 3.706778e-04	k: 407	n:1210000
ZMYND8   1210000 perm   921 sec   (1313 perm/sec)   p_kst 3.363636e-04   p_cons 8.100893e-01   p_joint 3.363636e-04

Joint ci ratio: 1.930918e-01	ci left: 3.051038e-04	ci right 3.710768e-04	k: 411	n:1220000
Cons ci ratio: 1.718513e-03	ci left: 8.093651e-01	ci right 8.107580e-01	k: 988276	n:1220000
KS ci ratio: 1.930918e-01	ci left: 3.051038e-04	ci right 3.710768e-04	k: 411	n:1220000
ZMYND8   1220000 perm   934 sec   (1306 perm/sec)   p_kst 3.368852e-04   p_cons 8.100623e-01   p_joint 3.368852e-04

Joint ci ratio: 1.919306e-01	ci left: 3.064924e-04	ci right 3.723206e-04	k: 416	n:1230000
Cons ci ratio: 1.711208e-03	ci left: 8.094228e-01	ci right 8.108099e-01	k: 996444	n:1230000
KS ci ratio: 1.919306e-01	ci left: 3.064924e-04	ci right 3.723206e-04	k: 416	n:1230000
ZMYND8   1230000 perm   947 sec   (1298 perm/sec)   p_kst 3.382114e-04   p_cons 8.101171e-01   p_joint 3.382114e-04

Joint ci ratio: 1.914721e-01	ci left: 3.055562e-04	ci right 3.710083e-04	k: 418	n:1240000
Cons ci ratio: 1.704384e-03	ci left: 8.094093e-01	ci right 8.107908e-01	k: 1004525	n:1240000
KS ci ratio: 1.914721e-01	ci left: 3.055562e-04	ci right 3.710083e-04	k: 418	n:1240000
ZMYND8   1240000 perm   960 sec   (1291 perm/sec)   p_kst 3.370968e-04   p_cons 8.101008e-01   p_joint 3.370968e-04

Joint ci ratio: 1.901155e-01	ci left: 3.076825e-04	ci right 3.730692e-04	k: 424	n:1250000
Cons ci ratio: 1.697668e-03	ci left: 8.093913e-01	ci right 8.107673e-01	k: 1012600	n:1250000
KS ci ratio: 1.901155e-01	ci left: 3.076825e-04	ci right 3.730692e-04	k: 424	n:1250000
ZMYND8   1250000 perm   974 sec   (1284 perm/sec)   p_kst 3.392000e-04   p_cons 8.100800e-01   p_joint 3.392000e-04

Joint ci ratio: 1.894481e-01	ci left: 3.075084e-04	ci right 3.726022e-04	k: 427	n:1260000
Cons ci ratio: 1.691108e-03	ci left: 8.093592e-01	ci right 8.107298e-01	k: 1020657	n:1260000
KS ci ratio: 1.894481e-01	ci left: 3.075084e-04	ci right 3.726022e-04	k: 427	n:1260000
ZMYND8   1260000 perm   987 sec   (1277 perm/sec)   p_kst 3.388889e-04   p_cons 8.100452e-01   p_joint 3.388889e-04

Joint ci ratio: 1.892273e-01	ci left: 3.058371e-04	ci right 3.704931e-04	k: 428	n:1270000
Cons ci ratio: 1.684478e-03	ci left: 8.093545e-01	ci right 8.107197e-01	k: 1028748	n:1270000
KS ci ratio: 1.892273e-01	ci left: 3.058371e-04	ci right 3.704931e-04	k: 428	n:1270000
ZMYND8   1270000 perm   1000 sec   (1270 perm/sec)   p_kst 3.370079e-04   p_cons 8.100378e-01   p_joint 3.370079e-04

Joint ci ratio: 1.890074e-01	ci left: 3.041920e-04	ci right 3.684168e-04	k: 429	n:1280000
Cons ci ratio: 1.677789e-03	ci left: 8.093748e-01	ci right 8.107347e-01	k: 1036871	n:1280000
KS ci ratio: 1.890074e-01	ci left: 3.041920e-04	ci right 3.684168e-04	k: 429	n:1280000
ZMYND8   1280000 perm   1014 sec   (1263 perm/sec)   p_kst 3.351563e-04   p_cons 8.100555e-01   p_joint 3.351563e-04

Joint ci ratio: 1.881343e-01	ci left: 3.047883e-04	ci right 3.688079e-04	k: 433	n:1290000
Cons ci ratio: 1.671115e-03	ci left: 8.094066e-01	ci right 8.107610e-01	k: 1045009	n:1290000
KS ci ratio: 1.881343e-01	ci left: 3.047883e-04	ci right 3.688079e-04	k: 433	n:1290000
ZMYND8   1290000 perm   1027 sec   (1256 perm/sec)   p_kst 3.356589e-04   p_cons 8.100845e-01   p_joint 3.356589e-04

Joint ci ratio: 1.874874e-01	ci left: 3.046430e-04	ci right 3.683869e-04	k: 436	n:1300000
Cons ci ratio: 1.664846e-03	ci left: 8.093777e-01	ci right 8.107271e-01	k: 1053069	n:1300000
KS ci ratio: 1.874874e-01	ci left: 3.046430e-04	ci right 3.683869e-04	k: 436	n:1300000
ZMYND8   1300000 perm   1040 sec   (1250 perm/sec)   p_kst 3.353846e-04   p_cons 8.100531e-01   p_joint 3.353846e-04

Joint ci ratio: 1.864239e-01	ci left: 3.059557e-04	ci right 3.695700e-04	k: 441	n:1310000
Cons ci ratio: 1.658288e-03	ci left: 8.094158e-01	ci right 8.107599e-01	k: 1061216	n:1310000
KS ci ratio: 1.864239e-01	ci left: 3.059557e-04	ci right 3.695700e-04	k: 441	n:1310000
ZMYND8   1310000 perm   1054 sec   (1243 perm/sec)   p_kst 3.366412e-04   p_cons 8.100885e-01   p_joint 3.366412e-04

Joint ci ratio: 1.855859e-01	ci left: 3.065270e-04	ci right 3.699415e-04	k: 445	n:1320000
Cons ci ratio: 1.651896e-03	ci left: 8.094367e-01	ci right 8.107756e-01	k: 1069341	n:1320000
KS ci ratio: 1.855859e-01	ci left: 3.065270e-04	ci right 3.699415e-04	k: 445	n:1320000
ZMYND8   1320000 perm   1068 sec   (1236 perm/sec)   p_kst 3.371212e-04   p_cons 8.101068e-01   p_joint 3.371212e-04

Joint ci ratio: 1.853784e-01	ci left: 3.049393e-04	ci right 3.679468e-04	k: 446	n:1330000
Cons ci ratio: 1.645723e-03	ci left: 8.094301e-01	ci right 8.107640e-01	k: 1077430	n:1330000
KS ci ratio: 1.853784e-01	ci left: 3.049393e-04	ci right 3.679468e-04	k: 446	n:1330000
ZMYND8   1330000 perm   1081 sec   (1230 perm/sec)   p_kst 3.353383e-04   p_cons 8.100977e-01   p_joint 3.353383e-04

Joint ci ratio: 1.847595e-01	ci left: 3.047987e-04	ci right 3.675433e-04	k: 449	n:1340000
Cons ci ratio: 1.639630e-03	ci left: 8.094214e-01	ci right 8.107504e-01	k: 1085516	n:1340000
KS ci ratio: 1.847595e-01	ci left: 3.047987e-04	ci right 3.675433e-04	k: 449	n:1340000
ZMYND8   1340000 perm   1095 sec   (1223 perm/sec)   p_kst 3.350746e-04   p_cons 8.100866e-01   p_joint 3.350746e-04

Joint ci ratio: 1.843504e-01	ci left: 3.039540e-04	ci right 3.663706e-04	k: 451	n:1350000
Cons ci ratio: 1.633377e-03	ci left: 8.094559e-01	ci right 8.107798e-01	k: 1093660	n:1350000
KS ci ratio: 1.843504e-01	ci left: 3.039540e-04	ci right 3.663706e-04	k: 451	n:1350000
ZMYND8   1350000 perm   1110 sec   (1217 perm/sec)   p_kst 3.340741e-04   p_cons 8.101185e-01   p_joint 3.340741e-04

Joint ci ratio: 1.837416e-01	ci left: 3.038233e-04	ci right 3.659841e-04	k: 454	n:1360000
Cons ci ratio: 1.627268e-03	ci left: 8.094759e-01	ci right 8.107949e-01	k: 1101785	n:1360000
KS ci ratio: 1.837416e-01	ci left: 3.038233e-04	ci right 3.659841e-04	k: 454	n:1360000
ZMYND8   1360000 perm   1124 sec   (1210 perm/sec)   p_kst 3.338235e-04   p_cons 8.101360e-01   p_joint 3.338235e-04

Joint ci ratio: 1.837418e-01	ci left: 3.016055e-04	ci right 3.633127e-04	k: 454	n:1370000
Cons ci ratio: 1.621366e-03	ci left: 8.094692e-01	ci right 8.107835e-01	k: 1109874	n:1370000
KS ci ratio: 1.837418e-01	ci left: 3.016055e-04	ci right 3.633127e-04	k: 454	n:1370000
ZMYND8   1370000 perm   1138 sec   (1204 perm/sec)   p_kst 3.313869e-04   p_cons 8.101270e-01   p_joint 3.313869e-04

Joint ci ratio: 1.833394e-01	ci left: 3.008027e-04	ci right 3.621958e-04	k: 456	n:1380000
Cons ci ratio: 1.615584e-03	ci left: 8.094518e-01	ci right 8.107613e-01	k: 1117948	n:1380000
KS ci ratio: 1.833394e-01	ci left: 3.008027e-04	ci right 3.621958e-04	k: 456	n:1380000
ZMYND8   1380000 perm   1152 sec   (1198 perm/sec)   p_kst 3.304348e-04   p_cons 8.101072e-01   p_joint 3.304348e-04

Joint ci ratio: 1.825423e-01	ci left: 3.013845e-04	ci right 3.625994e-04	k: 460	n:1390000
Cons ci ratio: 1.609951e-03	ci left: 8.094181e-01	ci right 8.107230e-01	k: 1125999	n:1390000
KS ci ratio: 1.825423e-01	ci left: 3.013845e-04	ci right 3.625994e-04	k: 460	n:1390000
ZMYND8   1390000 perm   1166 sec   (1192 perm/sec)   p_kst 3.309353e-04   p_cons 8.100712e-01   p_joint 3.309353e-04

Joint ci ratio: 1.819512e-01	ci left: 3.012769e-04	ci right 3.622500e-04	k: 463	n:1400000
Cons ci ratio: 1.604126e-03	ci left: 8.094328e-01	ci right 8.107330e-01	k: 1134117	n:1400000
KS ci ratio: 1.819512e-01	ci left: 3.012769e-04	ci right 3.622500e-04	k: 463	n:1400000
ZMYND8   1400000 perm   1181 sec   (1186 perm/sec)   p_kst 3.307143e-04   p_cons 8.100836e-01   p_joint 3.307143e-04

Joint ci ratio: 1.809786e-01	ci left: 3.025252e-04	ci right 3.633878e-04	k: 468	n:1410000
Cons ci ratio: 1.598372e-03	ci left: 8.094459e-01	ci right 8.107414e-01	k: 1142233	n:1410000
KS ci ratio: 1.809786e-01	ci left: 3.025252e-04	ci right 3.633878e-04	k: 468	n:1410000
ZMYND8   1410000 perm   1195 sec   (1180 perm/sec)   p_kst 3.319149e-04   p_cons 8.100943e-01   p_joint 3.319149e-04

Joint ci ratio: 1.805940e-01	ci left: 3.017395e-04	ci right 3.623009e-04	k: 470	n:1420000
Cons ci ratio: 1.592624e-03	ci left: 8.094694e-01	ci right 8.107603e-01	k: 1150364	n:1420000
KS ci ratio: 1.805940e-01	ci left: 3.017395e-04	ci right 3.623009e-04	k: 470	n:1420000
ZMYND8   1420000 perm   1209 sec   (1174 perm/sec)   p_kst 3.309859e-04   p_cons 8.101155e-01   p_joint 3.309859e-04

Joint ci ratio: 1.796429e-01	ci left: 3.029683e-04	ci right 3.634212e-04	k: 475	n:1430000
Cons ci ratio: 1.587205e-03	ci left: 8.094408e-01	ci right 8.107272e-01	k: 1158421	n:1430000
KS ci ratio: 1.796429e-01	ci left: 3.029683e-04	ci right 3.634212e-04	k: 475	n:1430000
ZMYND8   1430000 perm   1224 sec   (1168 perm/sec)   p_kst 3.321678e-04   p_cons 8.100846e-01   p_joint 3.321678e-04

Joint ci ratio: 1.790795e-01	ci left: 3.028541e-04	ci right 3.630743e-04	k: 478	n:1440000
Cons ci ratio: 1.581502e-03	ci left: 8.094786e-01	ci right 8.107605e-01	k: 1166573	n:1440000
KS ci ratio: 1.790795e-01	ci left: 3.028541e-04	ci right 3.630743e-04	k: 478	n:1440000
ZMYND8   1440000 perm   1239 sec   (1163 perm/sec)   p_kst 3.319444e-04   p_cons 8.101201e-01   p_joint 3.319444e-04

Joint ci ratio: 1.785214e-01	ci left: 3.027419e-04	ci right 3.627318e-04	k: 481	n:1450000
Cons ci ratio: 1.576241e-03	ci left: 8.094413e-01	ci right 8.107188e-01	k: 1174617	n:1450000
KS ci ratio: 1.785214e-01	ci left: 3.027419e-04	ci right 3.627318e-04	k: 481	n:1450000
ZMYND8   1450000 perm   1253 sec   (1157 perm/sec)   p_kst 3.317241e-04   p_cons 8.100807e-01   p_joint 3.317241e-04

Joint ci ratio: 1.776025e-01	ci left: 3.039403e-04	ci right 3.638244e-04	k: 486	n:1460000
Cons ci ratio: 1.570840e-03	ci left: 8.094423e-01	ci right 8.107154e-01	k: 1182716	n:1460000
KS ci ratio: 1.776025e-01	ci left: 3.039403e-04	ci right 3.638244e-04	k: 486	n:1460000
ZMYND8   1460000 perm   1268 sec   (1151 perm/sec)   p_kst 3.328767e-04   p_cons 8.100795e-01   p_joint 3.328767e-04

Joint ci ratio: 1.766976e-01	ci left: 3.051233e-04	ci right 3.649014e-04	k: 491	n:1470000
Cons ci ratio: 1.565314e-03	ci left: 8.094786e-01	ci right 8.107474e-01	k: 1190867	n:1470000
KS ci ratio: 1.766976e-01	ci left: 3.051233e-04	ci right 3.649014e-04	k: 491	n:1470000
ZMYND8   1470000 perm   1283 sec   (1146 perm/sec)   p_kst 3.340136e-04   p_cons 8.101136e-01   p_joint 3.340136e-04

Joint ci ratio: 1.763396e-01	ci left: 3.043533e-04	ci right 3.638469e-04	k: 493	n:1480000
Cons ci ratio: 1.559969e-03	ci left: 8.094902e-01	ci right 8.107546e-01	k: 1198982	n:1480000
KS ci ratio: 1.763396e-01	ci left: 3.043533e-04	ci right 3.638469e-04	k: 493	n:1480000
ZMYND8   1480000 perm   1298 sec   (1140 perm/sec)   p_kst 3.331081e-04   p_cons 8.101230e-01   p_joint 3.331081e-04

Joint ci ratio: 1.758066e-01	ci left: 3.042353e-04	ci right 3.635070e-04	k: 496	n:1490000
Cons ci ratio: 1.554852e-03	ci left: 8.094673e-01	ci right 8.107275e-01	k: 1207046	n:1490000
KS ci ratio: 1.758066e-01	ci left: 3.042353e-04	ci right 3.635070e-04	k: 496	n:1490000
ZMYND8   1490000 perm   1313 sec   (1135 perm/sec)   p_kst 3.328859e-04   p_cons 8.100980e-01   p_joint 3.328859e-04

Joint ci ratio: 1.752785e-01	ci left: 3.041192e-04	ci right 3.631714e-04	k: 499	n:1500000
Cons ci ratio: 1.549563e-03	ci left: 8.094887e-01	ci right 8.107447e-01	k: 1215176	n:1500000
KS ci ratio: 1.752785e-01	ci left: 3.041192e-04	ci right 3.631714e-04	k: 499	n:1500000
ZMYND8   1500000 perm   1328 sec   (1129 perm/sec)   p_kst 3.326667e-04   p_cons 8.101173e-01   p_joint 3.326667e-04

Joint ci ratio: 1.744085e-01	ci left: 3.052715e-04	ci right 3.642223e-04	k: 504	n:1510000
Cons ci ratio: 1.544298e-03	ci left: 8.095159e-01	ci right 8.107677e-01	k: 1223315	n:1510000
KS ci ratio: 1.744085e-01	ci left: 3.052715e-04	ci right 3.642223e-04	k: 504	n:1510000
ZMYND8   1510000 perm   1344 sec   (1124 perm/sec)   p_kst 3.337748e-04   p_cons 8.101424e-01   p_joint 3.337748e-04

Joint ci ratio: 1.737218e-01	ci left: 3.057801e-04	ci right 3.645722e-04	k: 508	n:1520000
Cons ci ratio: 1.539175e-03	ci left: 8.095250e-01	ci right 8.107725e-01	k: 1231427	n:1520000
KS ci ratio: 1.737218e-01	ci left: 3.057801e-04	ci right 3.645722e-04	k: 508	n:1520000
ZMYND8   1520000 perm   1359 sec   (1118 perm/sec)   p_kst 3.342105e-04   p_cons 8.101493e-01   p_joint 3.342105e-04

Joint ci ratio: 1.728747e-01	ci left: 3.069078e-04	ci right 3.655990e-04	k: 513	n:1530000
Cons ci ratio: 1.534099e-03	ci left: 8.095345e-01	ci right 8.107780e-01	k: 1239540	n:1530000
KS ci ratio: 1.728747e-01	ci left: 3.069078e-04	ci right 3.655990e-04	k: 513	n:1530000
ZMYND8   1530000 perm   1375 sec   (1113 perm/sec)   p_kst 3.352941e-04   p_cons 8.101569e-01   p_joint 3.352941e-04

Joint ci ratio: 1.723724e-01	ci left: 3.067788e-04	ci right 3.652571e-04	k: 516	n:1540000
Cons ci ratio: 1.529270e-03	ci left: 8.095043e-01	ci right 8.107439e-01	k: 1247592	n:1540000
KS ci ratio: 1.723724e-01	ci left: 3.067788e-04	ci right 3.652571e-04	k: 516	n:1540000
ZMYND8   1540000 perm   1390 sec   (1108 perm/sec)   p_kst 3.350649e-04   p_cons 8.101247e-01   p_joint 3.350649e-04

Joint ci ratio: 1.720400e-01	ci left: 3.060342e-04	ci right 3.642465e-04	k: 518	n:1550000
Cons ci ratio: 1.524087e-03	ci left: 8.095553e-01	ci right 8.107907e-01	k: 1255769	n:1550000
KS ci ratio: 1.720400e-01	ci left: 3.060342e-04	ci right 3.642465e-04	k: 518	n:1550000
ZMYND8   1550000 perm   1406 sec   (1103 perm/sec)   p_kst 3.341935e-04   p_cons 8.101735e-01   p_joint 3.341935e-04

Joint ci ratio: 1.717096e-01	ci left: 3.052994e-04	ci right 3.632487e-04	k: 520	n:1560000
Cons ci ratio: 1.519076e-03	ci left: 8.095812e-01	ci right 8.108125e-01	k: 1263908	n:1560000
KS ci ratio: 1.717096e-01	ci left: 3.052994e-04	ci right 3.632487e-04	k: 520	n:1560000
ZMYND8   1560000 perm   1422 sec   (1097 perm/sec)   p_kst 3.333333e-04   p_cons 8.101974e-01   p_joint 3.333333e-04

Joint ci ratio: 1.708914e-01	ci left: 3.064030e-04	ci right 3.642561e-04	k: 525	n:1570000
Cons ci ratio: 1.514202e-03	ci left: 8.095889e-01	ci right 8.108163e-01	k: 1272019	n:1570000
KS ci ratio: 1.708914e-01	ci left: 3.064030e-04	ci right 3.642561e-04	k: 525	n:1570000
ZMYND8   1570000 perm   1437 sec   (1092 perm/sec)   p_kst 3.343949e-04   p_cons 8.102032e-01   p_joint 3.343949e-04

Joint ci ratio: 1.702453e-01	ci left: 3.068873e-04	ci right 3.645903e-04	k: 529	n:1580000
Cons ci ratio: 1.509468e-03	ci left: 8.095775e-01	ci right 8.108011e-01	k: 1280100	n:1580000
KS ci ratio: 1.702453e-01	ci left: 3.068873e-04	ci right 3.645903e-04	k: 529	n:1580000
ZMYND8   1580000 perm   1453 sec   (1087 perm/sec)   p_kst 3.348101e-04   p_cons 8.101899e-01   p_joint 3.348101e-04

Joint ci ratio: 1.697655e-01	ci left: 3.067637e-04	ci right 3.642643e-04	k: 532	n:1590000
Cons ci ratio: 1.504978e-03	ci left: 8.095254e-01	ci right 8.107452e-01	k: 1288116	n:1590000
KS ci ratio: 1.697655e-01	ci left: 3.067637e-04	ci right 3.642643e-04	k: 532	n:1590000
ZMYND8   1590000 perm   1469 sec   (1082 perm/sec)   p_kst 3.345912e-04   p_cons 8.101358e-01   p_joint 3.345912e-04

Joint ci ratio: 1.692898e-01	ci left: 3.066419e-04	ci right 3.639421e-04	k: 535	n:1600000
Cons ci ratio: 1.500342e-03	ci left: 8.095120e-01	ci right 8.107281e-01	k: 1296193	n:1600000
KS ci ratio: 1.692898e-01	ci left: 3.066419e-04	ci right 3.639421e-04	k: 535	n:1600000
ZMYND8   1600000 perm   1485 sec   (1077 perm/sec)   p_kst 3.343750e-04   p_cons 8.101206e-01   p_joint 3.343750e-04

Joint ci ratio: 1.691322e-01	ci left: 3.053321e-04	ci right 3.623291e-04	k: 536	n:1610000
Cons ci ratio: 1.495875e-03	ci left: 8.094728e-01	ci right 8.106851e-01	k: 1304228	n:1610000
KS ci ratio: 1.691322e-01	ci left: 3.053321e-04	ci right 3.623291e-04	k: 536	n:1610000
ZMYND8   1610000 perm   1501 sec   (1073 perm/sec)   p_kst 3.329193e-04   p_cons 8.100795e-01   p_joint 3.329193e-04

Joint ci ratio: 1.685058e-01	ci left: 3.058121e-04	ci right 3.626658e-04	k: 540	n:1620000
Cons ci ratio: 1.491191e-03	ci left: 8.094871e-01	ci right 8.106957e-01	k: 1312349	n:1620000
KS ci ratio: 1.685058e-01	ci left: 3.058121e-04	ci right 3.626658e-04	k: 540	n:1620000
ZMYND8   1620000 perm   1517 sec   (1068 perm/sec)   p_kst 3.333333e-04   p_cons 8.100920e-01   p_joint 3.333333e-04

Joint ci ratio: 1.681952e-01	ci left: 3.051113e-04	ci right 3.617195e-04	k: 542	n:1630000
Cons ci ratio: 1.486520e-03	ci left: 8.095075e-01	ci right 8.107123e-01	k: 1320480	n:1630000
KS ci ratio: 1.681952e-01	ci left: 3.051113e-04	ci right 3.617195e-04	k: 542	n:1630000
ZMYND8   1630000 perm   1533 sec   (1063 perm/sec)   p_kst 3.325153e-04   p_cons 8.101104e-01   p_joint 3.325153e-04

Joint ci ratio: 1.675791e-01	ci left: 3.055874e-04	ci right 3.620553e-04	k: 546	n:1640000
Cons ci ratio: 1.481876e-03	ci left: 8.095312e-01	ci right 8.107323e-01	k: 1328617	n:1640000
KS ci ratio: 1.675791e-01	ci left: 3.055874e-04	ci right 3.620553e-04	k: 546	n:1640000
ZMYND8   1640000 perm   1550 sec   (1058 perm/sec)   p_kst 3.329268e-04   p_cons 8.101323e-01   p_joint 3.329268e-04

Joint ci ratio: 1.671215e-01	ci left: 3.054774e-04	ci right 3.617553e-04	k: 549	n:1650000
Cons ci ratio: 1.477318e-03	ci left: 8.095456e-01	ci right 8.107430e-01	k: 1336739	n:1650000
KS ci ratio: 1.671215e-01	ci left: 3.054774e-04	ci right 3.617553e-04	k: 549	n:1650000
ZMYND8   1650000 perm   1566 sec   (1054 perm/sec)   p_kst 3.327273e-04   p_cons 8.101448e-01   p_joint 3.327273e-04

Joint ci ratio: 1.665170e-01	ci left: 3.059462e-04	ci right 3.620862e-04	k: 553	n:1660000
Cons ci ratio: 1.472748e-03	ci left: 8.095713e-01	ci right 8.107650e-01	k: 1344880	n:1660000
KS ci ratio: 1.665170e-01	ci left: 3.059462e-04	ci right 3.620862e-04	k: 553	n:1660000
ZMYND8   1660000 perm   1583 sec   (1049 perm/sec)   p_kst 3.331325e-04   p_cons 8.101687e-01   p_joint 3.331325e-04

Joint ci ratio: 1.660680e-01	ci left: 3.058358e-04	ci right 3.617891e-04	k: 556	n:1670000
Cons ci ratio: 1.468294e-03	ci left: 8.095810e-01	ci right 8.107712e-01	k: 1352995	n:1670000
KS ci ratio: 1.660680e-01	ci left: 3.058358e-04	ci right 3.617891e-04	k: 556	n:1670000
ZMYND8   1670000 perm   1599 sec   (1044 perm/sec)   p_kst 3.329341e-04   p_cons 8.101766e-01   p_joint 3.329341e-04

Joint ci ratio: 1.657707e-01	ci left: 3.051564e-04	ci right 3.608755e-04	k: 558	n:1680000
Cons ci ratio: 1.464033e-03	ci left: 8.095585e-01	ci right 8.107452e-01	k: 1361056	n:1680000
KS ci ratio: 1.657707e-01	ci left: 3.051564e-04	ci right 3.608755e-04	k: 558	n:1680000
ZMYND8   1680000 perm   1615 sec   (1040 perm/sec)   p_kst 3.321429e-04   p_cons 8.101524e-01   p_joint 3.321429e-04

Joint ci ratio: 1.650342e-01	ci left: 3.061869e-04	ci right 3.618211e-04	k: 563	n:1690000
Cons ci ratio: 1.459783e-03	ci left: 8.095416e-01	ci right 8.107248e-01	k: 1369126	n:1690000
KS ci ratio: 1.650342e-01	ci left: 3.061869e-04	ci right 3.618211e-04	k: 563	n:1690000
ZMYND8   1690000 perm   1632 sec   (1035 perm/sec)   p_kst 3.331361e-04   p_cons 8.101337e-01   p_joint 3.331361e-04

Joint ci ratio: 1.643074e-01	ci left: 3.072058e-04	ci right 3.627550e-04	k: 568	n:1700000
Cons ci ratio: 1.455546e-03	ci left: 8.095302e-01	ci right 8.107099e-01	k: 1377205	n:1700000
KS ci ratio: 1.643074e-01	ci left: 3.072058e-04	ci right 3.627550e-04	k: 568	n:1700000
ZMYND8   1700000 perm   1649 sec   (1031 perm/sec)   p_kst 3.341176e-04   p_cons 8.101206e-01   p_joint 3.341176e-04

Joint ci ratio: 1.638760e-01	ci left: 3.070916e-04	ci right 3.624600e-04	k: 571	n:1710000
Cons ci ratio: 1.451298e-03	ci left: 8.095289e-01	ci right 8.107052e-01	k: 1385301	n:1710000
KS ci ratio: 1.638760e-01	ci left: 3.070916e-04	ci right 3.624600e-04	k: 571	n:1710000
ZMYND8   1710000 perm   1666 sec   (1026 perm/sec)   p_kst 3.339181e-04   p_cons 8.101175e-01   p_joint 3.339181e-04

Joint ci ratio: 1.631643e-01	ci left: 3.080942e-04	ci right 3.633784e-04	k: 576	n:1720000
Cons ci ratio: 1.447054e-03	ci left: 8.095346e-01	ci right 8.107074e-01	k: 1393409	n:1720000
KS ci ratio: 1.631643e-01	ci left: 3.080942e-04	ci right 3.633784e-04	k: 576	n:1720000
ZMYND8   1720000 perm   1683 sec   (1022 perm/sec)   p_kst 3.348837e-04   p_cons 8.101215e-01   p_joint 3.348837e-04

Joint ci ratio: 1.627418e-01	ci left: 3.079767e-04	ci right 3.630828e-04	k: 579	n:1730000
Cons ci ratio: 1.442931e-03	ci left: 8.095223e-01	ci right 8.106917e-01	k: 1401486	n:1730000
KS ci ratio: 1.627418e-01	ci left: 3.079767e-04	ci right 3.630828e-04	k: 579	n:1730000
ZMYND8   1730000 perm   1700 sec   (1017 perm/sec)   p_kst 3.346821e-04   p_cons 8.101075e-01   p_joint 3.346821e-04

Joint ci ratio: 1.620448e-01	ci left: 3.089635e-04	ci right 3.639863e-04	k: 584	n:1740000
Cons ci ratio: 1.438911e-03	ci left: 8.094957e-01	ci right 8.106619e-01	k: 1409538	n:1740000
KS ci ratio: 1.620448e-01	ci left: 3.089635e-04	ci right 3.639863e-04	k: 584	n:1740000
ZMYND8   1740000 perm   1718 sec   (1013 perm/sec)   p_kst 3.356322e-04   p_cons 8.100793e-01   p_joint 3.356322e-04

Joint ci ratio: 1.617685e-01	ci left: 3.082945e-04	ci right 3.630955e-04	k: 586	n:1750000
Cons ci ratio: 1.434823e-03	ci left: 8.094912e-01	ci right 8.106541e-01	k: 1417628	n:1750000
KS ci ratio: 1.617685e-01	ci left: 3.082945e-04	ci right 3.630955e-04	k: 586	n:1750000
ZMYND8   1750000 perm   1735 sec   (1009 perm/sec)   p_kst 3.348571e-04   p_cons 8.100731e-01   p_joint 3.348571e-04

Joint ci ratio: 1.609479e-01	ci left: 3.098143e-04	ci right 3.645791e-04	k: 592	n:1760000
Cons ci ratio: 1.430698e-03	ci left: 8.095021e-01	ci right 8.106616e-01	k: 1425745	n:1760000
KS ci ratio: 1.609479e-01	ci left: 3.098143e-04	ci right 3.645791e-04	k: 592	n:1760000
ZMYND8   1760000 perm   1753 sec   (1004 perm/sec)   p_kst 3.363636e-04   p_cons 8.100824e-01   p_joint 3.363636e-04

Joint ci ratio: 1.604078e-01	ci left: 3.102330e-04	ci right 3.648700e-04	k: 596	n:1770000
Cons ci ratio: 1.426700e-03	ci left: 8.094931e-01	ci right 8.106494e-01	k: 1433827	n:1770000
KS ci ratio: 1.604078e-01	ci left: 3.102330e-04	ci right 3.648700e-04	k: 596	n:1770000
ZMYND8   1770000 perm   1770 sec   (1000 perm/sec)   p_kst 3.367232e-04   p_cons 8.100718e-01   p_joint 3.367232e-04

Joint ci ratio: 1.597402e-01	ci left: 3.111866e-04	ci right 3.657415e-04	k: 601	n:1780000
Cons ci ratio: 1.422746e-03	ci left: 8.094820e-01	ci right 8.106350e-01	k: 1441905	n:1780000
KS ci ratio: 1.597402e-01	ci left: 3.111866e-04	ci right 3.657415e-04	k: 601	n:1780000
ZMYND8   1780000 perm   1787 sec   (996 perm/sec)   p_kst 3.376404e-04   p_cons 8.100590e-01   p_joint 3.376404e-04

Joint ci ratio: 1.594756e-01	ci left: 3.105208e-04	ci right 3.648602e-04	k: 603	n:1790000
Cons ci ratio: 1.418770e-03	ci left: 8.094827e-01	ci right 8.106325e-01	k: 1450004	n:1790000
KS ci ratio: 1.594756e-01	ci left: 3.105208e-04	ci right 3.648602e-04	k: 603	n:1790000
ZMYND8   1790000 perm   1805 sec   (991 perm/sec)   p_kst 3.368715e-04   p_cons 8.100581e-01   p_joint 3.368715e-04

Joint ci ratio: 1.592123e-01	ci left: 3.098625e-04	ci right 3.639886e-04	k: 605	n:1800000
Cons ci ratio: 1.414789e-03	ci left: 8.094918e-01	ci right 8.106384e-01	k: 1458118	n:1800000
KS ci ratio: 1.592123e-01	ci left: 3.098625e-04	ci right 3.639886e-04	k: 605	n:1800000
ZMYND8   1800000 perm   1823 sec   (987 perm/sec)   p_kst 3.361111e-04   p_cons 8.100656e-01   p_joint 3.361111e-04

Joint ci ratio: 1.586894e-01	ci left: 3.102726e-04	ci right 3.642754e-04	k: 609	n:1810000
Cons ci ratio: 1.410854e-03	ci left: 8.094980e-01	ci right 8.106414e-01	k: 1466227	n:1810000
KS ci ratio: 1.586894e-01	ci left: 3.102726e-04	ci right 3.642754e-04	k: 609	n:1810000
ZMYND8   1810000 perm   1841 sec   (983 perm/sec)   p_kst 3.364641e-04   p_cons 8.100702e-01   p_joint 3.364641e-04

Joint ci ratio: 1.583006e-01	ci left: 3.101508e-04	ci right 3.639876e-04	k: 612	n:1820000
Cons ci ratio: 1.406942e-03	ci left: 8.095063e-01	ci right 8.106466e-01	k: 1474340	n:1820000
KS ci ratio: 1.583006e-01	ci left: 3.101508e-04	ci right 3.639876e-04	k: 612	n:1820000
ZMYND8   1820000 perm   1859 sec   (979 perm/sec)   p_kst 3.362637e-04   p_cons 8.100769e-01   p_joint 3.362637e-04

Joint ci ratio: 1.577866e-01	ci left: 3.105553e-04	ci right 3.642707e-04	k: 616	n:1830000
Cons ci ratio: 1.403012e-03	ci left: 8.095255e-01	ci right 8.106626e-01	k: 1482473	n:1830000
KS ci ratio: 1.577866e-01	ci left: 3.105553e-04	ci right 3.642707e-04	k: 616	n:1830000
ZMYND8   1830000 perm   1877 sec   (975 perm/sec)   p_kst 3.366120e-04   p_cons 8.100945e-01   p_joint 3.366120e-04

Joint ci ratio: 1.568989e-01	ci left: 3.125221e-04	ci right 3.662450e-04	k: 623	n:1840000
Cons ci ratio: 1.399153e-03	ci left: 8.095363e-01	ci right 8.106703e-01	k: 1490591	n:1840000
KS ci ratio: 1.568989e-01	ci left: 3.125221e-04	ci right 3.662450e-04	k: 623	n:1840000
ZMYND8   1840000 perm   1895 sec   (971 perm/sec)   p_kst 3.385870e-04   p_cons 8.101038e-01   p_joint 3.385870e-04

Joint ci ratio: 1.565231e-01	ci left: 3.123908e-04	ci right 3.659504e-04	k: 626	n:1850000
Cons ci ratio: 1.395224e-03	ci left: 8.095692e-01	ci right 8.107001e-01	k: 1498750	n:1850000
KS ci ratio: 1.565231e-01	ci left: 3.123908e-04	ci right 3.659504e-04	k: 626	n:1850000
ZMYND8   1850000 perm   1913 sec   (967 perm/sec)   p_kst 3.383784e-04   p_cons 8.101351e-01   p_joint 3.383784e-04

Joint ci ratio: 1.561500e-01	ci left: 3.122611e-04	ci right 3.656589e-04	k: 629	n:1860000
Cons ci ratio: 1.391204e-03	ci left: 8.096292e-01	ci right 8.107569e-01	k: 1506960	n:1860000
KS ci ratio: 1.561500e-01	ci left: 3.122611e-04	ci right 3.656589e-04	k: 629	n:1860000
ZMYND8   1860000 perm   1932 sec   (963 perm/sec)   p_kst 3.381720e-04   p_cons 8.101935e-01   p_joint 3.381720e-04

Joint ci ratio: 1.557796e-01	ci left: 3.121329e-04	ci right 3.653703e-04	k: 632	n:1870000
Cons ci ratio: 1.387346e-03	ci left: 8.096602e-01	ci right 8.107848e-01	k: 1515117	n:1870000
KS ci ratio: 1.557796e-01	ci left: 3.121329e-04	ci right 3.653703e-04	k: 632	n:1870000
ZMYND8   1870000 perm   1950 sec   (959 perm/sec)   p_kst 3.379679e-04   p_cons 8.102230e-01   p_joint 3.379679e-04

Joint ci ratio: 1.554118e-01	ci left: 3.120062e-04	ci right 3.650847e-04	k: 635	n:1880000
Cons ci ratio: 1.383513e-03	ci left: 8.096925e-01	ci right 8.108140e-01	k: 1523277	n:1880000
KS ci ratio: 1.554118e-01	ci left: 3.120062e-04	ci right 3.650847e-04	k: 635	n:1880000
ZMYND8   1880000 perm   1969 sec   (955 perm/sec)   p_kst 3.377660e-04   p_cons 8.102537e-01   p_joint 3.377660e-04

Joint ci ratio: 1.550465e-01	ci left: 3.118811e-04	ci right 3.648020e-04	k: 638	n:1890000
Cons ci ratio: 1.380014e-03	ci left: 8.096571e-01	ci right 8.107758e-01	k: 1531310	n:1890000
KS ci ratio: 1.550465e-01	ci left: 3.118811e-04	ci right 3.648020e-04	k: 638	n:1890000
ZMYND8   1890000 perm   1988 sec   (951 perm/sec)   p_kst 3.375661e-04   p_cons 8.102169e-01   p_joint 3.375661e-04

Joint ci ratio: 1.545635e-01	ci left: 3.122633e-04	ci right 3.650687e-04	k: 642	n:1900000
Cons ci ratio: 1.376375e-03	ci left: 8.096591e-01	ci right 8.107747e-01	k: 1539413	n:1900000
KS ci ratio: 1.545635e-01	ci left: 3.122633e-04	ci right 3.650687e-04	k: 642	n:1900000
ZMYND8   1900000 perm   2006 sec   (947 perm/sec)   p_kst 3.378947e-04   p_cons 8.102174e-01   p_joint 3.378947e-04

Joint ci ratio: 1.542042e-01	ci left: 3.121384e-04	ci right 3.647887e-04	k: 645	n:1910000
Cons ci ratio: 1.372712e-03	ci left: 8.096730e-01	ci right 8.107857e-01	k: 1547539	n:1910000
KS ci ratio: 1.542042e-01	ci left: 3.121384e-04	ci right 3.647887e-04	k: 645	n:1910000
ZMYND8   1910000 perm   2025 sec   (943 perm/sec)   p_kst 3.376963e-04   p_cons 8.102298e-01   p_joint 3.376963e-04

Joint ci ratio: 1.539661e-01	ci left: 3.115142e-04	ci right 3.639705e-04	k: 647	n:1920000
Cons ci ratio: 1.369112e-03	ci left: 8.096790e-01	ci right 8.107888e-01	k: 1555650	n:1920000
KS ci ratio: 1.539661e-01	ci left: 3.115142e-04	ci right 3.639705e-04	k: 647	n:1920000
ZMYND8   1920000 perm   2044 sec   (939 perm/sec)   p_kst 3.369792e-04   p_cons 8.102344e-01   p_joint 3.369792e-04

Joint ci ratio: 1.538475e-01	ci left: 3.103983e-04	ci right 3.626228e-04	k: 648	n:1930000
Cons ci ratio: 1.365460e-03	ci left: 8.097031e-01	ci right 8.108100e-01	k: 1563796	n:1930000
KS ci ratio: 1.538475e-01	ci left: 3.103983e-04	ci right 3.626228e-04	k: 648	n:1930000
ZMYND8   1930000 perm   2063 sec   (936 perm/sec)   p_kst 3.357513e-04   p_cons 8.102570e-01   p_joint 3.357513e-04

Joint ci ratio: 1.532583e-01	ci left: 3.112766e-04	ci right 3.634298e-04	k: 653	n:1940000
Cons ci ratio: 1.361830e-03	ci left: 8.097285e-01	ci right 8.108324e-01	k: 1571945	n:1940000
KS ci ratio: 1.532583e-01	ci left: 3.112766e-04	ci right 3.634298e-04	k: 653	n:1940000
ZMYND8   1940000 perm   2082 sec   (932 perm/sec)   p_kst 3.365979e-04   p_cons 8.102809e-01   p_joint 3.365979e-04

Joint ci ratio: 1.529080e-01	ci left: 3.111598e-04	ci right 3.631634e-04	k: 656	n:1950000
Cons ci ratio: 1.358372e-03	ci left: 8.097213e-01	ci right 8.108224e-01	k: 1580031	n:1950000
KS ci ratio: 1.529080e-01	ci left: 3.111598e-04	ci right 3.631634e-04	k: 656	n:1950000
ZMYND8   1950000 perm   2101 sec   (928 perm/sec)   p_kst 3.364103e-04   p_cons 8.102723e-01   p_joint 3.364103e-04

Joint ci ratio: 1.524446e-01	ci left: 3.115352e-04	ci right 3.634293e-04	k: 660	n:1960000
Cons ci ratio: 1.354974e-03	ci left: 8.097065e-01	ci right 8.108048e-01	k: 1588102	n:1960000
KS ci ratio: 1.524446e-01	ci left: 3.115352e-04	ci right 3.634293e-04	k: 660	n:1960000
ZMYND8   1960000 perm   2120 sec   (924 perm/sec)   p_kst 3.367347e-04   p_cons 8.102561e-01   p_joint 3.367347e-04

Joint ci ratio: 1.524447e-01	ci left: 3.099537e-04	ci right 3.615845e-04	k: 660	n:1970000
Cons ci ratio: 1.351610e-03	ci left: 8.096898e-01	ci right 8.107854e-01	k: 1596169	n:1970000
KS ci ratio: 1.524447e-01	ci left: 3.099537e-04	ci right 3.615845e-04	k: 660	n:1970000
ZMYND8   1970000 perm   2140 sec   (921 perm/sec)   p_kst 3.350254e-04   p_cons 8.102381e-01   p_joint 3.350254e-04

Joint ci ratio: 1.517574e-01	ci left: 3.113033e-04	ci right 3.629038e-04	k: 666	n:1980000
Cons ci ratio: 1.348266e-03	ci left: 8.096743e-01	ci right 8.107672e-01	k: 1604238	n:1980000
KS ci ratio: 1.517574e-01	ci left: 3.113033e-04	ci right 3.629038e-04	k: 666	n:1980000
ZMYND8   1980000 perm   2159 sec   (917 perm/sec)   p_kst 3.363636e-04   p_cons 8.102212e-01   p_joint 3.363636e-04

Joint ci ratio: 1.489901e-01	ci left: 3.218293e-04	ci right 3.741151e-04	k: 691	n:1990000
Cons ci ratio: 1.344670e-03	ci left: 8.097224e-01	ci right 8.108124e-01	k: 1612433	n:1990000
KS ci ratio: 1.516439e-01	ci left: 3.102224e-04	ci right 3.616018e-04	k: 667	n:1990000
ZMYND8   1990000 perm   2178 sec   (913 perm/sec)   p_kst 3.351759e-04   p_cons 8.102678e-01   p_joint 3.472362e-04

Joint ci ratio: 1.487753e-01	ci left: 3.211829e-04	ci right 3.732818e-04	k: 693	n:2000000
Cons ci ratio: 1.341291e-03	ci left: 8.097269e-01	ci right 8.108142e-01	k: 1620542	n:2000000
KS ci ratio: 1.514174e-01	ci left: 3.096334e-04	ci right 3.608317e-04	k: 669	n:2000000
ZMYND8   2000000 perm   2198 sec   (910 perm/sec)   p_kst 3.345000e-04   p_cons 8.102710e-01   p_joint 3.465000e-04

Joint ci ratio: 1.481362e-01	ci left: 3.224591e-04	ci right 3.745205e-04	k: 699	n:2010000
Cons ci ratio: 1.337923e-03	ci left: 8.097344e-01	ci right 8.108190e-01	k: 1628657	n:2010000
KS ci ratio: 1.507438e-01	ci left: 3.109651e-04	ci right 3.621343e-04	k: 675	n:2010000
ZMYND8   2010000 perm   2218 sec   (906 perm/sec)   p_kst 3.358209e-04   p_cons 8.102771e-01   p_joint 3.477612e-04

Joint ci ratio: 1.480306e-01	ci left: 3.213395e-04	ci right 3.731799e-04	k: 700	n:2020000
Cons ci ratio: 1.334579e-03	ci left: 8.097423e-01	ci right 8.108241e-01	k: 1636773	n:2020000
KS ci ratio: 1.506326e-01	ci left: 3.099021e-04	ci right 3.608553e-04	k: 676	n:2020000
ZMYND8   2020000 perm   2237 sec   (903 perm/sec)   p_kst 3.346535e-04   p_cons 8.102837e-01   p_joint 3.465347e-04

Joint ci ratio: 1.477149e-01	ci left: 3.211797e-04	ci right 3.728740e-04	k: 703	n:2030000
Cons ci ratio: 1.331343e-03	ci left: 8.097309e-01	ci right 8.108101e-01	k: 1644850	n:2030000
KS ci ratio: 1.502999e-01	ci left: 3.097977e-04	ci right 3.606111e-04	k: 679	n:2030000
ZMYND8   2030000 perm   2257 sec   (899 perm/sec)   p_kst 3.344828e-04   p_cons 8.102709e-01   p_joint 3.463054e-04

Joint ci ratio: 1.469858e-01	ci left: 3.229102e-04	ci right 3.746040e-04	k: 710	n:2040000
Cons ci ratio: 1.327988e-03	ci left: 8.097525e-01	ci right 8.108290e-01	k: 1652994	n:2040000
KS ci ratio: 1.496411e-01	ci left: 3.111099e-04	ci right 3.618948e-04	k: 685	n:2040000
ZMYND8   2040000 perm   2277 sec   (896 perm/sec)   p_kst 3.357843e-04   p_cons 8.102912e-01   p_joint 3.480392e-04

Joint ci ratio: 1.464717e-01	ci left: 3.236845e-04	ci right 3.753051e-04	k: 715	n:2050000
Cons ci ratio: 1.324729e-03	ci left: 8.097577e-01	ci right 8.108316e-01	k: 1661105	n:2050000
KS ci ratio: 1.490987e-01	ci left: 3.119401e-04	ci right 3.626596e-04	k: 690	n:2050000
ZMYND8   2050000 perm   2297 sec   (893 perm/sec)   p_kst 3.365854e-04   p_cons 8.102951e-01   p_joint 3.487805e-04

Joint ci ratio: 1.460642e-01	ci left: 3.239839e-04	ci right 3.754960e-04	k: 719	n:2060000
Cons ci ratio: 1.321603e-03	ci left: 8.097372e-01	ci right 8.108085e-01	k: 1669163	n:2060000
KS ci ratio: 1.486690e-01	ci left: 3.122953e-04	ci right 3.629131e-04	k: 694	n:2060000
ZMYND8   2060000 perm   2317 sec   (889 perm/sec)   p_kst 3.368932e-04   p_cons 8.102733e-01   p_joint 3.490291e-04

Joint ci ratio: 1.455596e-01	ci left: 3.247461e-04	ci right 3.761855e-04	k: 724	n:2070000
Cons ci ratio: 1.318510e-03	ci left: 8.097144e-01	ci right 8.107832e-01	k: 1677216	n:2070000
KS ci ratio: 1.481370e-01	ci left: 3.131124e-04	ci right 3.636650e-04	k: 699	n:2070000
ZMYND8   2070000 perm   2337 sec   (886 perm/sec)   p_kst 3.376812e-04   p_cons 8.102493e-01   p_joint 3.497585e-04

Joint ci ratio: 1.453593e-01	ci left: 3.241114e-04	ci right 3.753735e-04	k: 726	n:2080000
Cons ci ratio: 1.315346e-03	ci left: 8.097136e-01	ci right 8.107798e-01	k: 1685314	n:2080000
KS ci ratio: 1.479259e-01	ci left: 3.125330e-04	ci right 3.629137e-04	k: 701	n:2080000
ZMYND8   2080000 perm   2357 sec   (882 perm/sec)   p_kst 3.370192e-04   p_cons 8.102471e-01   p_joint 3.490385e-04

Joint ci ratio: 1.448620e-01	ci left: 3.248661e-04	ci right 3.760565e-04	k: 731	n:2090000
Cons ci ratio: 1.312198e-03	ci left: 8.097142e-01	ci right 8.107778e-01	k: 1693415	n:2090000
KS ci ratio: 1.474018e-01	ci left: 3.133416e-04	ci right 3.636580e-04	k: 706	n:2090000
ZMYND8   2090000 perm   2378 sec   (879 perm/sec)   p_kst 3.377990e-04   p_cons 8.102464e-01   p_joint 3.497608e-04

Joint ci ratio: 1.442718e-01	ci left: 3.260729e-04	ci right 3.772262e-04	k: 737	n:2100000
Cons ci ratio: 1.309114e-03	ci left: 8.097052e-01	ci right 8.107663e-01	k: 1701496	n:2100000
KS ci ratio: 1.467802e-01	ci left: 3.146015e-04	ci right 3.648885e-04	k: 712	n:2100000
ZMYND8   2100000 perm   2398 sec   (876 perm/sec)   p_kst 3.390476e-04   p_cons 8.102362e-01   p_joint 3.509524e-04

Joint ci ratio: 1.440768e-01	ci left: 3.254412e-04	ci right 3.764204e-04	k: 739	n:2110000
Cons ci ratio: 1.305968e-03	ci left: 8.097158e-01	ci right 8.107744e-01	k: 1709618	n:2110000
KS ci ratio: 1.465748e-01	ci left: 3.140235e-04	ci right 3.641418e-04	k: 714	n:2110000
ZMYND8   2110000 perm   2418 sec   (873 perm/sec)   p_kst 3.383886e-04   p_cons 8.102455e-01   p_joint 3.502370e-04

Joint ci ratio: 1.438825e-01	ci left: 3.248155e-04	ci right 3.756222e-04	k: 741	n:2120000
Cons ci ratio: 1.302904e-03	ci left: 8.097126e-01	ci right 8.107687e-01	k: 1717711	n:2120000
KS ci ratio: 1.463703e-01	ci left: 3.134511e-04	ci right 3.634021e-04	k: 716	n:2120000
ZMYND8   2120000 perm   2439 sec   (869 perm/sec)   p_kst 3.377358e-04   p_cons 8.102410e-01   p_joint 3.495283e-04

Joint ci ratio: 1.434001e-01	ci left: 3.255536e-04	ci right 3.762905e-04	k: 746	n:2130000
Cons ci ratio: 1.299918e-03	ci left: 8.096957e-01	ci right 8.107494e-01	k: 1725775	n:2130000
KS ci ratio: 1.458625e-01	ci left: 3.142411e-04	ci right 3.641291e-04	k: 721	n:2130000
ZMYND8   2130000 perm   2460 sec   (866 perm/sec)   p_kst 3.384977e-04   p_cons 8.102230e-01   p_joint 3.502347e-04

Joint ci ratio: 1.430177e-01	ci left: 3.258346e-04	ci right 3.764682e-04	k: 750	n:2140000
Cons ci ratio: 1.296940e-03	ci left: 8.096819e-01	ci right 8.107331e-01	k: 1733845	n:2140000
KS ci ratio: 1.454601e-01	ci left: 3.145737e-04	ci right 3.643648e-04	k: 725	n:2140000
ZMYND8   2140000 perm   2480 sec   (863 perm/sec)   p_kst 3.387850e-04   p_cons 8.102079e-01   p_joint 3.504673e-04

Joint ci ratio: 1.427329e-01	ci left: 3.256645e-04	ci right 3.761624e-04	k: 753	n:2150000
Cons ci ratio: 1.294034e-03	ci left: 8.096561e-01	ci right 8.107049e-01	k: 1741889	n:2150000
KS ci ratio: 1.451605e-01	ci left: 3.144552e-04	ci right 3.641162e-04	k: 728	n:2150000
ZMYND8   2150000 perm   2501 sec   (860 perm/sec)   p_kst 3.386047e-04   p_cons 8.101809e-01   p_joint 3.502326e-04

Joint ci ratio: 1.426384e-01	ci left: 3.246032e-04	ci right 3.749004e-04	k: 754	n:2160000
Cons ci ratio: 1.291004e-03	ci left: 8.096648e-01	ci right 8.107112e-01	k: 1750007	n:2160000
KS ci ratio: 1.450612e-01	ci left: 3.134455e-04	ci right 3.629102e-04	k: 729	n:2160000
ZMYND8   2160000 perm   2522 sec   (857 perm/sec)   p_kst 3.375000e-04   p_cons 8.101884e-01   p_joint 3.490741e-04

Joint ci ratio: 1.425442e-01	ci left: 3.235517e-04	ci right 3.736500e-04	k: 755	n:2170000
Cons ci ratio: 1.287951e-03	ci left: 8.096841e-01	ci right 8.107280e-01	k: 1758148	n:2170000
KS ci ratio: 1.449620e-01	ci left: 3.124452e-04	ci right 3.617154e-04	k: 730	n:2170000
ZMYND8   2170000 perm   2543 sec   (853 perm/sec)   p_kst 3.364055e-04   p_cons 8.102065e-01   p_joint 3.479263e-04

Joint ci ratio: 1.422622e-01	ci left: 3.233947e-04	ci right 3.733611e-04	k: 758	n:2180000
Cons ci ratio: 1.284949e-03	ci left: 8.096958e-01	ci right 8.107373e-01	k: 1766273	n:2180000
KS ci ratio: 1.446654e-01	ci left: 3.123382e-04	ci right 3.614821e-04	k: 733	n:2180000
ZMYND8   2180000 perm   2564 sec   (850 perm/sec)   p_kst 3.362385e-04   p_cons 8.102170e-01   p_joint 3.477064e-04

Joint ci ratio: 1.442728e-01	ci left: 3.126725e-04	ci right 3.617239e-04	k: 737	n:2190000
Cons ci ratio: 1.282089e-03	ci left: 8.096786e-01	ci right 8.107178e-01	k: 1774335	n:2190000
KS ci ratio: 1.442728e-01	ci left: 3.126725e-04	ci right 3.617239e-04	k: 737	n:2190000
ZMYND8   2190000 perm   2585 sec   (847 perm/sec)   p_kst 3.365297e-04   p_cons 8.101986e-01   p_joint 3.365297e-04

Joint ci ratio: 1.438834e-01	ci left: 3.130039e-04	ci right 3.619634e-04	k: 741	n:2200000
Cons ci ratio: 1.279177e-03	ci left: 8.096785e-01	ci right 8.107153e-01	k: 1782434	n:2200000
KS ci ratio: 1.438834e-01	ci left: 3.130039e-04	ci right 3.619634e-04	k: 741	n:2200000
ZMYND8   2200000 perm   2606 sec   (844 perm/sec)   p_kst 3.368182e-04   p_cons 8.101973e-01   p_joint 3.368182e-04

Joint ci ratio: 1.435934e-01	ci left: 3.128963e-04	ci right 3.617318e-04	k: 744	n:2210000
Cons ci ratio: 1.276220e-03	ci left: 8.096941e-01	ci right 8.107286e-01	k: 1790568	n:2210000
KS ci ratio: 1.435934e-01	ci left: 3.128963e-04	ci right 3.617318e-04	k: 744	n:2210000
ZMYND8   2210000 perm   2628 sec   (841 perm/sec)   p_kst 3.366516e-04   p_cons 8.102118e-01   p_joint 3.366516e-04

Joint ci ratio: 1.435936e-01	ci left: 3.114868e-04	ci right 3.601024e-04	k: 744	n:2220000
Cons ci ratio: 1.273355e-03	ci left: 8.096921e-01	ci right 8.107242e-01	k: 1798663	n:2220000
KS ci ratio: 1.435936e-01	ci left: 3.114868e-04	ci right 3.601024e-04	k: 744	n:2220000
ZMYND8   2220000 perm   2649 sec   (838 perm/sec)   p_kst 3.351351e-04   p_cons 8.102086e-01   p_joint 3.351351e-04

Joint ci ratio: 1.433053e-01	ci left: 3.113870e-04	ci right 3.598812e-04	k: 747	n:2230000
Cons ci ratio: 1.270580e-03	ci left: 8.096730e-01	ci right 8.107029e-01	k: 1806720	n:2230000
KS ci ratio: 1.433053e-01	ci left: 3.113870e-04	ci right 3.598812e-04	k: 747	n:2230000
ZMYND8   2230000 perm   2671 sec   (835 perm/sec)   p_kst 3.349776e-04   p_cons 8.101883e-01   p_joint 3.349776e-04

Joint ci ratio: 1.431142e-01	ci left: 3.108577e-04	ci right 3.591994e-04	k: 749	n:2240000
Cons ci ratio: 1.267723e-03	ci left: 8.096787e-01	ci right 8.107062e-01	k: 1814832	n:2240000
KS ci ratio: 1.431142e-01	ci left: 3.108577e-04	ci right 3.591994e-04	k: 749	n:2240000
ZMYND8   2240000 perm   2692 sec   (832 perm/sec)   p_kst 3.343750e-04   p_cons 8.101929e-01   p_joint 3.343750e-04

Joint ci ratio: 1.426394e-01	ci left: 3.116189e-04	ci right 3.599045e-04	k: 754	n:2250000
Cons ci ratio: 1.264844e-03	ci left: 8.096941e-01	ci right 8.107193e-01	k: 1822966	n:2250000
KS ci ratio: 1.426394e-01	ci left: 3.116189e-04	ci right 3.599045e-04	k: 754	n:2250000
ZMYND8   2250000 perm   2714 sec   (829 perm/sec)   p_kst 3.351111e-04   p_cons 8.102071e-01   p_joint 3.351111e-04

Joint ci ratio: 1.422631e-01	ci left: 3.119469e-04	ci right 3.601450e-04	k: 758	n:2260000
Cons ci ratio: 1.262031e-03	ci left: 8.096979e-01	ci right 8.107208e-01	k: 1831074	n:2260000
KS ci ratio: 1.422631e-01	ci left: 3.119469e-04	ci right 3.601450e-04	k: 758	n:2260000
ZMYND8   2260000 perm   2736 sec   (826 perm/sec)   p_kst 3.353982e-04   p_cons 8.102097e-01   p_joint 3.353982e-04

Joint ci ratio: 1.420760e-01	ci left: 3.114224e-04	ci right 3.594708e-04	k: 760	n:2270000
Cons ci ratio: 1.259254e-03	ci left: 8.096976e-01	ci right 8.107183e-01	k: 1839173	n:2270000
KS ci ratio: 1.420760e-01	ci left: 3.114224e-04	ci right 3.594708e-04	k: 760	n:2270000
ZMYND8   2270000 perm   2758 sec   (823 perm/sec)   p_kst 3.348018e-04   p_cons 8.102084e-01   p_joint 3.348018e-04

Joint ci ratio: 1.416115e-01	ci left: 3.121717e-04	ci right 3.601649e-04	k: 765	n:2280000
Cons ci ratio: 1.256493e-03	ci left: 8.096978e-01	ci right 8.107163e-01	k: 1847273	n:2280000
KS ci ratio: 1.416115e-01	ci left: 3.121717e-04	ci right 3.601649e-04	k: 765	n:2280000
ZMYND8   2280000 perm   2780 sec   (820 perm/sec)   p_kst 3.355263e-04   p_cons 8.102075e-01   p_joint 3.355263e-04

Joint ci ratio: 1.415193e-01	ci left: 3.112297e-04	ci right 3.590443e-04	k: 766	n:2290000
Cons ci ratio: 1.253704e-03	ci left: 8.097094e-01	ci right 8.107256e-01	k: 1855399	n:2290000
KS ci ratio: 1.415193e-01	ci left: 3.112297e-04	ci right 3.590443e-04	k: 766	n:2290000
ZMYND8   2290000 perm   2802 sec   (817 perm/sec)   p_kst 3.344978e-04   p_cons 8.102179e-01   p_joint 3.344978e-04

Joint ci ratio: 1.411517e-01	ci left: 3.115542e-04	ci right 3.592838e-04	k: 770	n:2300000
Cons ci ratio: 1.251162e-03	ci left: 8.096647e-01	ci right 8.106788e-01	k: 1863396	n:2300000
KS ci ratio: 1.411517e-01	ci left: 3.115542e-04	ci right 3.592838e-04	k: 770	n:2300000
ZMYND8   2300000 perm   2824 sec   (814 perm/sec)   p_kst 3.347826e-04   p_cons 8.101722e-01   p_joint 3.347826e-04

Joint ci ratio: 1.409690e-01	ci left: 3.110407e-04	ci right 3.586248e-04	k: 772	n:2310000
Cons ci ratio: 1.248401e-03	ci left: 8.096781e-01	ci right 8.106900e-01	k: 1871526	n:2310000
KS ci ratio: 1.409690e-01	ci left: 3.110407e-04	ci right 3.586248e-04	k: 772	n:2310000
ZMYND8   2310000 perm   2846 sec   (812 perm/sec)   p_kst 3.341991e-04   p_cons 8.101844e-01   p_joint 3.341991e-04

Joint ci ratio: 1.406962e-01	ci left: 3.109476e-04	ci right 3.584177e-04	k: 775	n:2320000
Cons ci ratio: 1.245777e-03	ci left: 8.096620e-01	ci right 8.106717e-01	k: 1879588	n:2320000
KS ci ratio: 1.406962e-01	ci left: 3.109476e-04	ci right 3.584177e-04	k: 775	n:2320000
ZMYND8   2320000 perm   2869 sec   (809 perm/sec)   p_kst 3.340517e-04   p_cons 8.101672e-01   p_joint 3.340517e-04

Joint ci ratio: 1.404251e-01	ci left: 3.108553e-04	ci right 3.582122e-04	k: 778	n:2330000
Cons ci ratio: 1.243203e-03	ci left: 8.096379e-01	ci right 8.106455e-01	k: 1887631	n:2330000
KS ci ratio: 1.404251e-01	ci left: 3.108553e-04	ci right 3.582122e-04	k: 778	n:2330000
ZMYND8   2330000 perm   2891 sec   (806 perm/sec)   p_kst 3.339056e-04   p_cons 8.101421e-01   p_joint 3.339056e-04

Joint ci ratio: 1.399765e-01	ci left: 3.115887e-04	ci right 3.588930e-04	k: 783	n:2340000
Cons ci ratio: 1.240474e-03	ci left: 8.096563e-01	ci right 8.106617e-01	k: 1895773	n:2340000
KS ci ratio: 1.399765e-01	ci left: 3.115887e-04	ci right 3.588930e-04	k: 783	n:2340000
ZMYND8   2340000 perm   2914 sec   (803 perm/sec)   p_kst 3.346154e-04   p_cons 8.101594e-01   p_joint 3.346154e-04

Joint ci ratio: 1.397984e-01	ci left: 3.110840e-04	ci right 3.582467e-04	k: 785	n:2350000
Cons ci ratio: 1.237843e-03	ci left: 8.096546e-01	ci right 8.106578e-01	k: 1903868	n:2350000
KS ci ratio: 1.397984e-01	ci left: 3.110840e-04	ci right 3.582467e-04	k: 785	n:2350000
ZMYND8   2350000 perm   2936 sec   (800 perm/sec)   p_kst 3.340426e-04   p_cons 8.101566e-01   p_joint 3.340426e-04

Joint ci ratio: 1.396209e-01	ci left: 3.105837e-04	ci right 3.576057e-04	k: 787	n:2360000
Cons ci ratio: 1.235205e-03	ci left: 8.096588e-01	ci right 8.106599e-01	k: 1911977	n:2360000
KS ci ratio: 1.396209e-01	ci left: 3.105837e-04	ci right 3.576057e-04	k: 787	n:2360000
ZMYND8   2360000 perm   2959 sec   (798 perm/sec)   p_kst 3.334746e-04   p_cons 8.101597e-01   p_joint 3.334746e-04

Joint ci ratio: 1.393559e-01	ci left: 3.104949e-04	ci right 3.574068e-04	k: 790	n:2370000
Cons ci ratio: 1.232585e-03	ci left: 8.096626e-01	ci right 8.106616e-01	k: 1920085	n:2370000
KS ci ratio: 1.393559e-01	ci left: 3.104949e-04	ci right 3.574068e-04	k: 790	n:2370000
ZMYND8   2370000 perm   2982 sec   (795 perm/sec)   p_kst 3.333333e-04   p_cons 8.101624e-01   p_joint 3.333333e-04

Joint ci ratio: 1.392679e-01	ci left: 3.095958e-04	ci right 3.563399e-04	k: 791	n:2380000
Cons ci ratio: 1.229999e-03	ci left: 8.096621e-01	ci right 8.106590e-01	k: 1928183	n:2380000
KS ci ratio: 1.392679e-01	ci left: 3.095958e-04	ci right 3.563399e-04	k: 791	n:2380000
ZMYND8   2380000 perm   3005 sec   (792 perm/sec)   p_kst 3.323529e-04   p_cons 8.101609e-01   p_joint 3.323529e-04

Joint ci ratio: 1.388303e-01	ci left: 3.103197e-04	ci right 3.570138e-04	k: 796	n:2390000
Cons ci ratio: 1.227366e-03	ci left: 8.096775e-01	ci right 8.106723e-01	k: 1936319	n:2390000
KS ci ratio: 1.388303e-01	ci left: 3.103197e-04	ci right 3.570138e-04	k: 796	n:2390000
ZMYND8   2390000 perm   3028 sec   (789 perm/sec)   p_kst 3.330544e-04   p_cons 8.101753e-01   p_joint 3.330544e-04

Joint ci ratio: 1.384832e-01	ci left: 3.106355e-04	ci right 3.572506e-04	k: 800	n:2400000
Cons ci ratio: 1.224907e-03	ci left: 8.096532e-01	ci right 8.106460e-01	k: 1944360	n:2400000
KS ci ratio: 1.384832e-01	ci left: 3.106355e-04	ci right 3.572506e-04	k: 800	n:2400000
ZMYND8   2400000 perm   3051 sec   (787 perm/sec)   p_kst 3.333333e-04   p_cons 8.101500e-01   p_joint 3.333333e-04

Joint ci ratio: 1.383107e-01	ci left: 3.101477e-04	ci right 3.566269e-04	k: 802	n:2410000
Cons ci ratio: 1.222361e-03	ci left: 8.096549e-01	ci right 8.106456e-01	k: 1952463	n:2410000
KS ci ratio: 1.383107e-01	ci left: 3.101477e-04	ci right 3.566269e-04	k: 802	n:2410000
ZMYND8   2410000 perm   3073 sec   (784 perm/sec)   p_kst 3.327801e-04   p_cons 8.101506e-01   p_joint 3.327801e-04

Joint ci ratio: 1.381388e-01	ci left: 3.096640e-04	ci right 3.560082e-04	k: 804	n:2420000
Cons ci ratio: 1.219809e-03	ci left: 8.096619e-01	ci right 8.106506e-01	k: 1960579	n:2420000
KS ci ratio: 1.381388e-01	ci left: 3.096640e-04	ci right 3.560082e-04	k: 804	n:2420000
ZMYND8   2420000 perm   3097 sec   (781 perm/sec)   p_kst 3.322314e-04   p_cons 8.101566e-01   p_joint 3.322314e-04

Joint ci ratio: 1.378822e-01	ci left: 3.095816e-04	ci right 3.558203e-04	k: 807	n:2430000
Cons ci ratio: 1.217341e-03	ci left: 8.096516e-01	ci right 8.106382e-01	k: 1968653	n:2430000
KS ci ratio: 1.378822e-01	ci left: 3.095816e-04	ci right 3.558203e-04	k: 807	n:2430000
ZMYND8   2430000 perm   3119 sec   (779 perm/sec)   p_kst 3.320988e-04   p_cons 8.101453e-01   p_joint 3.320988e-04

Joint ci ratio: 1.375421e-01	ci left: 3.098957e-04	ci right 3.560578e-04	k: 811	n:2440000
Cons ci ratio: 1.214832e-03	ci left: 8.096557e-01	ci right 8.106403e-01	k: 1976762	n:2440000
KS ci ratio: 1.375421e-01	ci left: 3.098957e-04	ci right 3.560578e-04	k: 811	n:2440000
ZMYND8   2440000 perm   3143 sec   (776 perm/sec)   p_kst 3.323770e-04   p_cons 8.101484e-01   p_joint 3.323770e-04

Joint ci ratio: 1.373731e-01	ci left: 3.094191e-04	ci right 3.554489e-04	k: 813	n:2450000
Cons ci ratio: 1.212299e-03	ci left: 8.096696e-01	ci right 8.106521e-01	k: 1984895	n:2450000
KS ci ratio: 1.373731e-01	ci left: 3.094191e-04	ci right 3.554489e-04	k: 813	n:2450000
ZMYND8   2450000 perm   3166 sec   (774 perm/sec)   p_kst 3.318367e-04   p_cons 8.101612e-01   p_joint 3.318367e-04

Joint ci ratio: 1.372047e-01	ci left: 3.089463e-04	ci right 3.548449e-04	k: 815	n:2460000
Cons ci ratio: 1.209720e-03	ci left: 8.096992e-01	ci right 8.106797e-01	k: 1993067	n:2460000
KS ci ratio: 1.372047e-01	ci left: 3.089463e-04	ci right 3.548449e-04	k: 815	n:2460000
ZMYND8   2460000 perm   3190 sec   (771 perm/sec)   p_kst 3.313008e-04   p_cons 8.101898e-01   p_joint 3.313008e-04

Joint ci ratio: 1.366198e-01	ci left: 3.104325e-04	ci right 3.563393e-04	k: 822	n:2470000
Cons ci ratio: 1.207280e-03	ci left: 8.096974e-01	ci right 8.106759e-01	k: 2001162	n:2470000
KS ci ratio: 1.366198e-01	ci left: 3.104325e-04	ci right 3.563393e-04	k: 822	n:2470000
ZMYND8   2470000 perm   3214 sec   (769 perm/sec)   p_kst 3.327935e-04   p_cons 8.101870e-01   p_joint 3.327935e-04

Joint ci ratio: 1.360424e-01	ci left: 3.119071e-04	ci right 3.578212e-04	k: 829	n:2480000
Cons ci ratio: 1.204794e-03	ci left: 8.097110e-01	ci right 8.106875e-01	k: 2009295	n:2480000
KS ci ratio: 1.360424e-01	ci left: 3.119071e-04	ci right 3.578212e-04	k: 829	n:2480000
ZMYND8   2480000 perm   3238 sec   (766 perm/sec)   p_kst 3.342742e-04   p_cons 8.101996e-01   p_joint 3.342742e-04

Joint ci ratio: 1.357972e-01	ci left: 3.118183e-04	ci right 3.576300e-04	k: 832	n:2490000
Cons ci ratio: 1.202299e-03	ci left: 8.097309e-01	ci right 8.107054e-01	k: 2017444	n:2490000
KS ci ratio: 1.357972e-01	ci left: 3.118183e-04	ci right 3.576300e-04	k: 832	n:2490000
ZMYND8   2490000 perm   3262 sec   (763 perm/sec)   p_kst 3.341365e-04   p_cons 8.102185e-01   p_joint 3.341365e-04

Joint ci ratio: 1.353914e-01	ci left: 3.125032e-04	ci right 3.582672e-04	k: 837	n:2500000
Cons ci ratio: 1.199901e-03	ci left: 8.097294e-01	ci right 8.107019e-01	k: 2025540	n:2500000
KS ci ratio: 1.353914e-01	ci left: 3.125032e-04	ci right 3.582672e-04	k: 837	n:2500000
ZMYND8   2500000 perm   3287 sec   (761 perm/sec)   p_kst 3.348000e-04   p_cons 8.102160e-01   p_joint 3.348000e-04

Joint ci ratio: 1.349093e-01	ci left: 3.135678e-04	ci right 3.593111e-04	k: 843	n:2510000
Cons ci ratio: 1.197560e-03	ci left: 8.097171e-01	ci right 8.106878e-01	k: 2033609	n:2510000
KS ci ratio: 1.349093e-01	ci left: 3.135678e-04	ci right 3.593111e-04	k: 843	n:2510000
ZMYND8   2510000 perm   3312 sec   (758 perm/sec)   p_kst 3.358566e-04   p_cons 8.102028e-01   p_joint 3.358566e-04

Joint ci ratio: 1.345907e-01	ci left: 3.138573e-04	ci right 3.595260e-04	k: 847	n:2520000
Cons ci ratio: 1.195248e-03	ci left: 8.097010e-01	ci right 8.106697e-01	k: 2041668	n:2520000
KS ci ratio: 1.345907e-01	ci left: 3.138573e-04	ci right 3.595260e-04	k: 847	n:2520000
ZMYND8   2520000 perm   3337 sec   (755 perm/sec)   p_kst 3.361111e-04   p_cons 8.101857e-01   p_joint 3.361111e-04

Joint ci ratio: 1.343532e-01	ci left: 3.137626e-04	ci right 3.593306e-04	k: 850	n:2530000
Cons ci ratio: 1.192928e-03	ci left: 8.096905e-01	ci right 8.106574e-01	k: 2049741	n:2530000
KS ci ratio: 1.343532e-01	ci left: 3.137626e-04	ci right 3.593306e-04	k: 850	n:2530000
ZMYND8   2530000 perm   3362 sec   (752 perm/sec)   p_kst 3.359684e-04   p_cons 8.101743e-01   p_joint 3.359684e-04

Joint ci ratio: 1.341171e-01	ci left: 3.136687e-04	ci right 3.591367e-04	k: 853	n:2540000
Cons ci ratio: 1.190612e-03	ci left: 8.096825e-01	ci right 8.106475e-01	k: 2057820	n:2540000
KS ci ratio: 1.341171e-01	ci left: 3.136687e-04	ci right 3.591367e-04	k: 853	n:2540000
ZMYND8   2540000 perm   3388 sec   (750 perm/sec)   p_kst 3.358268e-04   p_cons 8.101654e-01   p_joint 3.358268e-04

Joint ci ratio: 1.340387e-01	ci left: 3.128177e-04	ci right 3.581336e-04	k: 854	n:2550000
Cons ci ratio: 1.188335e-03	ci left: 8.096679e-01	ci right 8.106310e-01	k: 2065882	n:2550000
KS ci ratio: 1.340387e-01	ci left: 3.128177e-04	ci right 3.581336e-04	k: 854	n:2550000
ZMYND8   2550000 perm   3415 sec   (747 perm/sec)   p_kst 3.349020e-04   p_cons 8.101498e-01   p_joint 3.349020e-04

Joint ci ratio: 1.337262e-01	ci left: 3.131059e-04	ci right 3.583494e-04	k: 858	n:2560000
Cons ci ratio: 1.185903e-03	ci left: 8.096972e-01	ci right 8.106584e-01	k: 2074056	n:2560000
KS ci ratio: 1.337262e-01	ci left: 3.131059e-04	ci right 3.583494e-04	k: 858	n:2560000
ZMYND8   2560000 perm   3440 sec   (744 perm/sec)   p_kst 3.351563e-04   p_cons 8.101781e-01   p_joint 3.351563e-04

Joint ci ratio: 1.334159e-01	ci left: 3.133920e-04	ci right 3.585635e-04	k: 862	n:2570000
Cons ci ratio: 1.183635e-03	ci left: 8.096873e-01	ci right 8.106466e-01	k: 2082130	n:2570000
KS ci ratio: 1.334159e-01	ci left: 3.133920e-04	ci right 3.585635e-04	k: 862	n:2570000
ZMYND8   2570000 perm   3464 sec   (742 perm/sec)   p_kst 3.354086e-04   p_cons 8.101673e-01   p_joint 3.354086e-04

Joint ci ratio: 1.331846e-01	ci left: 3.133013e-04	ci right 3.583752e-04	k: 865	n:2580000
Cons ci ratio: 1.181264e-03	ci left: 8.097078e-01	ci right 8.106652e-01	k: 2090282	n:2580000
KS ci ratio: 1.331846e-01	ci left: 3.133013e-04	ci right 3.583752e-04	k: 865	n:2580000
ZMYND8   2580000 perm   3489 sec   (739 perm/sec)   p_kst 3.352713e-04   p_cons 8.101868e-01   p_joint 3.352713e-04

Joint ci ratio: 1.331079e-01	ci left: 3.124649e-04	ci right 3.573905e-04	k: 866	n:2590000
Cons ci ratio: 1.178997e-03	ci left: 8.097045e-01	ci right 8.106601e-01	k: 2098373	n:2590000
KS ci ratio: 1.331079e-01	ci left: 3.124649e-04	ci right 3.573905e-04	k: 866	n:2590000
ZMYND8   2590000 perm   3516 sec   (737 perm/sec)   p_kst 3.343629e-04   p_cons 8.101826e-01   p_joint 3.343629e-04

Joint ci ratio: 1.331080e-01	ci left: 3.112631e-04	ci right 3.560160e-04	k: 866	n:2600000
Cons ci ratio: 1.176685e-03	ci left: 8.097166e-01	ci right 8.106704e-01	k: 2106504	n:2600000
KS ci ratio: 1.331080e-01	ci left: 3.112631e-04	ci right 3.560160e-04	k: 866	n:2600000
ZMYND8   2600000 perm   3542 sec   (734 perm/sec)   p_kst 3.330769e-04   p_cons 8.101938e-01   p_joint 3.330769e-04

Joint ci ratio: 1.328019e-01	ci left: 3.115521e-04	ci right 3.562354e-04	k: 870	n:2610000
Cons ci ratio: 1.174411e-03	ci left: 8.097222e-01	ci right 8.106741e-01	k: 2114618	n:2610000
KS ci ratio: 1.328019e-01	ci left: 3.115521e-04	ci right 3.562354e-04	k: 870	n:2610000
ZMYND8   2610000 perm   3569 sec   (731 perm/sec)   p_kst 3.333333e-04   p_cons 8.101985e-01   p_joint 3.333333e-04

Joint ci ratio: 1.324980e-01	ci left: 3.118390e-04	ci right 3.564531e-04	k: 874	n:2620000
Cons ci ratio: 1.172140e-03	ci left: 8.097304e-01	ci right 8.106804e-01	k: 2122739	n:2620000
KS ci ratio: 1.324980e-01	ci left: 3.118390e-04	ci right 3.564531e-04	k: 874	n:2620000
ZMYND8   2620000 perm   3596 sec   (729 perm/sec)   p_kst 3.335878e-04   p_cons 8.102057e-01   p_joint 3.335878e-04

Joint ci ratio: 1.323469e-01	ci left: 3.113886e-04	ci right 3.558834e-04	k: 876	n:2630000
Cons ci ratio: 1.169990e-03	ci left: 8.097099e-01	ci right 8.106582e-01	k: 2130785	n:2630000
KS ci ratio: 1.323469e-01	ci left: 3.113886e-04	ci right 3.558834e-04	k: 876	n:2630000
ZMYND8   2630000 perm   3623 sec   (726 perm/sec)   p_kst 3.330798e-04   p_cons 8.101844e-01   p_joint 3.330798e-04

Joint ci ratio: 1.322716e-01	ci left: 3.105753e-04	ci right 3.549267e-04	k: 877	n:2640000
Cons ci ratio: 1.167768e-03	ci left: 8.097120e-01	ci right 8.106585e-01	k: 2138890	n:2640000
KS ci ratio: 1.322716e-01	ci left: 3.105753e-04	ci right 3.549267e-04	k: 877	n:2640000
ZMYND8   2640000 perm   3649 sec   (723 perm/sec)   p_kst 3.321970e-04   p_cons 8.101856e-01   p_joint 3.321970e-04

Joint ci ratio: 1.321964e-01	ci left: 3.097682e-04	ci right 3.539772e-04	k: 878	n:2650000
Cons ci ratio: 1.165514e-03	ci left: 8.097258e-01	ci right 8.106705e-01	k: 2147026	n:2650000
KS ci ratio: 1.321964e-01	ci left: 3.097682e-04	ci right 3.539772e-04	k: 878	n:2650000
ZMYND8   2650000 perm   3676 sec   (721 perm/sec)   p_kst 3.313208e-04   p_cons 8.101985e-01   p_joint 3.313208e-04

Joint ci ratio: 1.319714e-01	ci left: 3.096942e-04	ci right 3.538115e-04	k: 881	n:2660000
Cons ci ratio: 1.163308e-03	ci left: 8.097301e-01	ci right 8.106730e-01	k: 2155137	n:2660000
KS ci ratio: 1.319714e-01	ci left: 3.096942e-04	ci right 3.538115e-04	k: 881	n:2660000
ZMYND8   2660000 perm   3702 sec   (718 perm/sec)   p_kst 3.312030e-04   p_cons 8.102019e-01   p_joint 3.312030e-04

Joint ci ratio: 1.318220e-01	ci left: 3.092587e-04	ci right 3.532601e-04	k: 883	n:2670000
Cons ci ratio: 1.160949e-03	ci left: 8.097782e-01	ci right 8.107192e-01	k: 2163365	n:2670000
KS ci ratio: 1.318220e-01	ci left: 3.092587e-04	ci right 3.532601e-04	k: 883	n:2670000
ZMYND8   2670000 perm   3729 sec   (716 perm/sec)   p_kst 3.307116e-04   p_cons 8.102491e-01   p_joint 3.307116e-04

Joint ci ratio: 1.315989e-01	ci left: 3.091872e-04	ci right 3.530983e-04	k: 886	n:2680000
Cons ci ratio: 1.158744e-03	ci left: 8.097890e-01	ci right 8.107282e-01	k: 2171494	n:2680000
KS ci ratio: 1.315989e-01	ci left: 3.091872e-04	ci right 3.530983e-04	k: 886	n:2680000
ZMYND8   2680000 perm   3757 sec   (713 perm/sec)   p_kst 3.305970e-04   p_cons 8.102590e-01   p_joint 3.305970e-04

Joint ci ratio: 1.313032e-01	ci left: 3.094759e-04	ci right 3.533215e-04	k: 890	n:2690000
Cons ci ratio: 1.156632e-03	ci left: 8.097781e-01	ci right 8.107156e-01	k: 2179565	n:2690000
KS ci ratio: 1.313032e-01	ci left: 3.094759e-04	ci right 3.533215e-04	k: 890	n:2690000
ZMYND8   2690000 perm   3782 sec   (711 perm/sec)   p_kst 3.308550e-04   p_cons 8.102472e-01   p_joint 3.308550e-04

Joint ci ratio: 1.310094e-01	ci left: 3.097626e-04	ci right 3.535430e-04	k: 894	n:2700000
Cons ci ratio: 1.154449e-03	ci left: 8.097896e-01	ci right 8.107253e-01	k: 2187696	n:2700000
KS ci ratio: 1.310094e-01	ci left: 3.097626e-04	ci right 3.535430e-04	k: 894	n:2700000
ZMYND8   2700000 perm   3808 sec   (709 perm/sec)   p_kst 3.311111e-04   p_cons 8.102578e-01   p_joint 3.311111e-04

Joint ci ratio: 1.308633e-01	ci left: 3.093334e-04	ci right 3.530005e-04	k: 896	n:2710000
Cons ci ratio: 1.152233e-03	ci left: 8.098128e-01	ci right 8.107467e-01	k: 2195859	n:2710000
KS ci ratio: 1.308633e-01	ci left: 3.093334e-04	ci right 3.530005e-04	k: 896	n:2710000
ZMYND8   2710000 perm   3835 sec   (707 perm/sec)   p_kst 3.306273e-04   p_cons 8.102801e-01   p_joint 3.306273e-04

Joint ci ratio: 1.307905e-01	ci left: 3.085517e-04	ci right 3.520824e-04	k: 897	n:2720000
Cons ci ratio: 1.150054e-03	ci left: 8.098295e-01	ci right 8.107617e-01	k: 2204005	n:2720000
KS ci ratio: 1.307905e-01	ci left: 3.085517e-04	ci right 3.520824e-04	k: 897	n:2720000
ZMYND8   2720000 perm   3861 sec   (704 perm/sec)   p_kst 3.297794e-04   p_cons 8.102960e-01   p_joint 3.297794e-04

Joint ci ratio: 1.307178e-01	ci left: 3.077758e-04	ci right 3.511710e-04	k: 898	n:2730000
Cons ci ratio: 1.148033e-03	ci left: 8.098069e-01	ci right 8.107375e-01	k: 2212044	n:2730000
KS ci ratio: 1.307178e-01	ci left: 3.077758e-04	ci right 3.511710e-04	k: 898	n:2730000
ZMYND8   2730000 perm   3888 sec   (702 perm/sec)   p_kst 3.289377e-04   p_cons 8.102725e-01   p_joint 3.289377e-04

Joint ci ratio: 1.305726e-01	ci left: 3.073586e-04	ci right 3.506432e-04	k: 900	n:2740000
Cons ci ratio: 1.145947e-03	ci left: 8.098049e-01	ci right 8.107338e-01	k: 2220139	n:2740000
KS ci ratio: 1.305726e-01	ci left: 3.073586e-04	ci right 3.506432e-04	k: 900	n:2740000
ZMYND8   2740000 perm   3914 sec   (700 perm/sec)   p_kst 3.284672e-04   p_cons 8.102697e-01   p_joint 3.284672e-04

Joint ci ratio: 1.305727e-01	ci left: 3.062409e-04	ci right 3.493681e-04	k: 900	n:2750000
Cons ci ratio: 1.143865e-03	ci left: 8.098048e-01	ci right 8.107320e-01	k: 2228239	n:2750000
KS ci ratio: 1.305727e-01	ci left: 3.062409e-04	ci right 3.493681e-04	k: 900	n:2750000
ZMYND8   2750000 perm   3941 sec   (698 perm/sec)   p_kst 3.272727e-04   p_cons 8.102687e-01   p_joint 3.272727e-04

Joint ci ratio: 1.304281e-01	ci left: 3.058324e-04	ci right 3.488506e-04	k: 902	n:2760000
Cons ci ratio: 1.141802e-03	ci left: 8.098025e-01	ci right 8.107280e-01	k: 2236333	n:2760000
KS ci ratio: 1.304281e-01	ci left: 3.058324e-04	ci right 3.488506e-04	k: 902	n:2760000
ZMYND8   2760000 perm   3968 sec   (696 perm/sec)   p_kst 3.268116e-04   p_cons 8.102656e-01   p_joint 3.268116e-04

Joint ci ratio: 1.302120e-01	ci left: 3.057760e-04	ci right 3.487095e-04	k: 905	n:2770000
Cons ci ratio: 1.139735e-03	ci left: 8.098045e-01	ci right 8.107284e-01	k: 2244439	n:2770000
KS ci ratio: 1.302120e-01	ci left: 3.057760e-04	ci right 3.487095e-04	k: 905	n:2770000
ZMYND8   2770000 perm   3997 sec   (693 perm/sec)   p_kst 3.267148e-04   p_cons 8.102668e-01   p_joint 3.267148e-04

Joint ci ratio: 1.300685e-01	ci left: 3.053721e-04	ci right 3.481980e-04	k: 907	n:2780000
Cons ci ratio: 1.137700e-03	ci left: 8.098008e-01	ci right 8.107230e-01	k: 2252529	n:2780000
KS ci ratio: 1.300685e-01	ci left: 3.053721e-04	ci right 3.481980e-04	k: 907	n:2780000
ZMYND8   2780000 perm   4024 sec   (691 perm/sec)   p_kst 3.262590e-04   p_cons 8.102622e-01   p_joint 3.262590e-04

Joint ci ratio: 1.297118e-01	ci left: 3.060114e-04	ci right 3.488003e-04	k: 912	n:2790000
Cons ci ratio: 1.135687e-03	ci left: 8.097942e-01	ci right 8.107148e-01	k: 2260611	n:2790000
KS ci ratio: 1.297118e-01	ci left: 3.060114e-04	ci right 3.488003e-04	k: 912	n:2790000
ZMYND8   2790000 perm   4051 sec   (689 perm/sec)   p_kst 3.268817e-04   p_cons 8.102548e-01   p_joint 3.268817e-04

Joint ci ratio: 1.295700e-01	ci left: 3.056097e-04	ci right 3.482920e-04	k: 914	n:2800000
Cons ci ratio: 1.133630e-03	ci left: 8.098024e-01	ci right 8.107213e-01	k: 2268734	n:2800000
KS ci ratio: 1.295700e-01	ci left: 3.056097e-04	ci right 3.482920e-04	k: 914	n:2800000
ZMYND8   2800000 perm   4078 sec   (687 perm/sec)   p_kst 3.264286e-04   p_cons 8.102621e-01   p_joint 3.264286e-04

Joint ci ratio: 1.292877e-01	ci left: 3.058995e-04	ci right 3.485221e-04	k: 918	n:2810000
Cons ci ratio: 1.131664e-03	ci left: 8.097887e-01	ci right 8.107060e-01	k: 2276796	n:2810000
KS ci ratio: 1.292877e-01	ci left: 3.058995e-04	ci right 3.485221e-04	k: 918	n:2810000
ZMYND8   2810000 perm   4105 sec   (685 perm/sec)   p_kst 3.266904e-04   p_cons 8.102477e-01   p_joint 3.266904e-04

Joint ci ratio: 1.292878e-01	ci left: 3.048147e-04	ci right 3.472862e-04	k: 918	n:2820000
Cons ci ratio: 1.129605e-03	ci left: 8.098036e-01	ci right 8.107192e-01	k: 2284938	n:2820000
KS ci ratio: 1.292878e-01	ci left: 3.048147e-04	ci right 3.472862e-04	k: 918	n:2820000
ZMYND8   2820000 perm   4132 sec   (682 perm/sec)   p_kst 3.255319e-04   p_cons 8.102617e-01   p_joint 3.255319e-04

Joint ci ratio: 1.290773e-01	ci left: 3.047634e-04	ci right 3.471534e-04	k: 921	n:2830000
Cons ci ratio: 1.127568e-03	ci left: 8.098151e-01	ci right 8.107291e-01	k: 2293071	n:2830000
KS ci ratio: 1.290773e-01	ci left: 3.047634e-04	ci right 3.471534e-04	k: 921	n:2830000
ZMYND8   2830000 perm   4159 sec   (680 perm/sec)   p_kst 3.254417e-04   p_cons 8.102724e-01   p_joint 3.254417e-04

Joint ci ratio: 1.287287e-01	ci left: 3.053941e-04	ci right 3.477483e-04	k: 926	n:2840000
Cons ci ratio: 1.125631e-03	ci left: 8.098023e-01	ci right 8.107147e-01	k: 2301135	n:2840000
KS ci ratio: 1.287287e-01	ci left: 3.053941e-04	ci right 3.477483e-04	k: 926	n:2840000
ZMYND8   2840000 perm   4186 sec   (678 perm/sec)   p_kst 3.260563e-04   p_cons 8.102588e-01   p_joint 3.260563e-04

Joint ci ratio: 1.286593e-01	ci left: 3.046622e-04	ci right 3.468903e-04	k: 927	n:2850000
Cons ci ratio: 1.123651e-03	ci left: 8.098039e-01	ci right 8.107147e-01	k: 2309240	n:2850000
KS ci ratio: 1.286593e-01	ci left: 3.046622e-04	ci right 3.468903e-04	k: 927	n:2850000
ZMYND8   2850000 perm   4213 sec   (677 perm/sec)   p_kst 3.252632e-04   p_cons 8.102596e-01   p_joint 3.252632e-04

Joint ci ratio: 1.284519e-01	ci left: 3.046121e-04	ci right 3.467600e-04	k: 930	n:2860000
Cons ci ratio: 1.121739e-03	ci left: 8.097898e-01	ci right 8.106990e-01	k: 2317300	n:2860000
KS ci ratio: 1.284519e-01	ci left: 3.046121e-04	ci right 3.467600e-04	k: 930	n:2860000
ZMYND8   2860000 perm   4239 sec   (675 perm/sec)   p_kst 3.251748e-04   p_cons 8.102448e-01   p_joint 3.251748e-04

Joint ci ratio: 1.283142e-01	ci left: 3.042252e-04	ci right 3.462711e-04	k: 932	n:2870000
Cons ci ratio: 1.119799e-03	ci left: 8.097863e-01	ci right 8.106939e-01	k: 2325390	n:2870000
KS ci ratio: 1.283142e-01	ci left: 3.042252e-04	ci right 3.462711e-04	k: 932	n:2870000
ZMYND8   2870000 perm   4266 sec   (673 perm/sec)   p_kst 3.247387e-04   p_cons 8.102404e-01   p_joint 3.247387e-04

Joint ci ratio: 1.282455e-01	ci left: 3.035050e-04	ci right 3.454271e-04	k: 933	n:2880000
Cons ci ratio: 1.117863e-03	ci left: 8.097845e-01	ci right 8.106906e-01	k: 2333485	n:2880000
KS ci ratio: 1.282455e-01	ci left: 3.035050e-04	ci right 3.454271e-04	k: 933	n:2880000
ZMYND8   2880000 perm   4293 sec   (671 perm/sec)   p_kst 3.239583e-04   p_cons 8.102378e-01   p_joint 3.239583e-04

Joint ci ratio: 1.280400e-01	ci left: 3.034596e-04	ci right 3.453032e-04	k: 936	n:2890000
Cons ci ratio: 1.115914e-03	ci left: 8.097890e-01	ci right 8.106935e-01	k: 2341598	n:2890000
KS ci ratio: 1.280400e-01	ci left: 3.034596e-04	ci right 3.453032e-04	k: 936	n:2890000
ZMYND8   2890000 perm   4320 sec   (669 perm/sec)   p_kst 3.238754e-04   p_cons 8.102415e-01   p_joint 3.238754e-04

Joint ci ratio: 1.278356e-01	ci left: 3.034145e-04	ci right 3.451800e-04	k: 939	n:2900000
Cons ci ratio: 1.114008e-03	ci left: 8.097841e-01	ci right 8.106870e-01	k: 2349684	n:2900000
KS ci ratio: 1.278356e-01	ci left: 3.034145e-04	ci right 3.451800e-04	k: 939	n:2900000
ZMYND8   2900000 perm   4347 sec   (667 perm/sec)   p_kst 3.237931e-04   p_cons 8.102359e-01   p_joint 3.237931e-04

Joint ci ratio: 1.276998e-01	ci left: 3.030372e-04	ci right 3.447031e-04	k: 941	n:2910000
Cons ci ratio: 1.112062e-03	ci left: 8.097933e-01	ci right 8.106947e-01	k: 2357811	n:2910000
KS ci ratio: 1.276998e-01	ci left: 3.030372e-04	ci right 3.447031e-04	k: 941	n:2910000
ZMYND8   2910000 perm   4374 sec   (665 perm/sec)   p_kst 3.233677e-04   p_cons 8.102443e-01   p_joint 3.233677e-04

Joint ci ratio: 1.274970e-01	ci left: 3.029940e-04	ci right 3.445828e-04	k: 944	n:2920000
Cons ci ratio: 1.110193e-03	ci left: 8.097840e-01	ci right 8.106839e-01	k: 2365884	n:2920000
KS ci ratio: 1.274970e-01	ci left: 3.029940e-04	ci right 3.445828e-04	k: 944	n:2920000
ZMYND8   2920000 perm   4402 sec   (663 perm/sec)   p_kst 3.232877e-04   p_cons 8.102342e-01   p_joint 3.232877e-04

Joint ci ratio: 1.272951e-01	ci left: 3.029511e-04	ci right 3.444632e-04	k: 947	n:2930000
Cons ci ratio: 1.108333e-03	ci left: 8.097748e-01	ci right 8.106731e-01	k: 2373957	n:2930000
KS ci ratio: 1.272951e-01	ci left: 3.029511e-04	ci right 3.444632e-04	k: 947	n:2930000
ZMYND8   2930000 perm   4429 sec   (662 perm/sec)   p_kst 3.232082e-04   p_cons 8.102242e-01   p_joint 3.232082e-04

Joint ci ratio: 1.271610e-01	ci left: 3.025793e-04	ci right 3.439935e-04	k: 949	n:2940000
Cons ci ratio: 1.106445e-03	ci left: 8.097758e-01	ci right 8.106726e-01	k: 2382060	n:2940000
KS ci ratio: 1.271610e-01	ci left: 3.025793e-04	ci right 3.439935e-04	k: 949	n:2940000
ZMYND8   2940000 perm   4457 sec   (660 perm/sec)   p_kst 3.227891e-04   p_cons 8.102245e-01   p_joint 3.227891e-04

Joint ci ratio: 1.267613e-01	ci left: 3.035229e-04	ci right 3.449259e-04	k: 955	n:2950000
Cons ci ratio: 1.104601e-03	ci left: 8.097673e-01	ci right 8.106626e-01	k: 2390135	n:2950000
KS ci ratio: 1.267613e-01	ci left: 3.035229e-04	ci right 3.449259e-04	k: 955	n:2950000
ZMYND8   2950000 perm   4485 sec   (658 perm/sec)   p_kst 3.237288e-04   p_cons 8.102153e-01   p_joint 3.237288e-04

Joint ci ratio: 1.266951e-01	ci left: 3.028246e-04	ci right 3.441091e-04	k: 956	n:2960000
Cons ci ratio: 1.102763e-03	ci left: 8.097599e-01	ci right 8.106537e-01	k: 2398213	n:2960000
KS ci ratio: 1.266951e-01	ci left: 3.028246e-04	ci right 3.441091e-04	k: 956	n:2960000
ZMYND8   2960000 perm   4512 sec   (656 perm/sec)   p_kst 3.229730e-04   p_cons 8.102071e-01   p_joint 3.229730e-04

Joint ci ratio: 1.264970e-01	ci left: 3.027831e-04	ci right 3.439926e-04	k: 959	n:2970000
Cons ci ratio: 1.100875e-03	ci left: 8.097691e-01	ci right 8.106613e-01	k: 2406340	n:2970000
KS ci ratio: 1.264970e-01	ci left: 3.027831e-04	ci right 3.439926e-04	k: 959	n:2970000
ZMYND8   2970000 perm   4540 sec   (654 perm/sec)   p_kst 3.228956e-04   p_cons 8.102155e-01   p_joint 3.228956e-04

Joint ci ratio: 1.264312e-01	ci left: 3.020920e-04	ci right 3.431844e-04	k: 960	n:2980000
Cons ci ratio: 1.099017e-03	ci left: 8.097724e-01	ci right 8.106632e-01	k: 2414450	n:2980000
KS ci ratio: 1.264312e-01	ci left: 3.020920e-04	ci right 3.431844e-04	k: 960	n:2980000
ZMYND8   2980000 perm   4568 sec   (652 perm/sec)   p_kst 3.221477e-04   p_cons 8.102181e-01   p_joint 3.221477e-04

Joint ci ratio: 1.261689e-01	ci left: 3.023772e-04	ci right 3.434167e-04	k: 964	n:2990000
Cons ci ratio: 1.097179e-03	ci left: 8.097728e-01	ci right 8.106621e-01	k: 2422551	n:2990000
KS ci ratio: 1.261689e-01	ci left: 3.023772e-04	ci right 3.434167e-04	k: 964	n:2990000
ZMYND8   2990000 perm   4596 sec   (651 perm/sec)   p_kst 3.224080e-04   p_cons 8.102177e-01   p_joint 3.224080e-04

Joint ci ratio: 1.259732e-01	ci left: 3.023378e-04	ci right 3.433035e-04	k: 967	n:3000000
Cons ci ratio: 1.095270e-03	ci left: 8.097958e-01	ci right 8.106836e-01	k: 2430720	n:3000000
KS ci ratio: 1.259732e-01	ci left: 3.023378e-04	ci right 3.433035e-04	k: 967	n:3000000
ZMYND8   3000000 perm   4624 sec   (649 perm/sec)   p_kst 3.223333e-04   p_cons 8.102400e-01   p_joint 3.223333e-04

Joint ci ratio: 1.255846e-01	ci left: 3.032640e-04	ci right 3.442190e-04	k: 973	n:3010000
Cons ci ratio: 1.093456e-03	ci left: 8.097944e-01	ci right 8.106807e-01	k: 2438816	n:3010000
KS ci ratio: 1.255846e-01	ci left: 3.032640e-04	ci right 3.442190e-04	k: 973	n:3010000
ZMYND8   3010000 perm   4652 sec   (647 perm/sec)   p_kst 3.232558e-04   p_cons 8.102379e-01   p_joint 3.232558e-04

Joint ci ratio: 1.253916e-01	ci left: 3.032220e-04	ci right 3.441037e-04	k: 976	n:3020000
Cons ci ratio: 1.091575e-03	ci left: 8.098146e-01	ci right 8.106994e-01	k: 2446977	n:3020000
KS ci ratio: 1.253916e-01	ci left: 3.032220e-04	ci right 3.441037e-04	k: 976	n:3020000
ZMYND8   3020000 perm   4681 sec   (645 perm/sec)   p_kst 3.231788e-04   p_cons 8.102573e-01   p_joint 3.231788e-04

Joint ci ratio: 1.253275e-01	ci left: 3.025409e-04	ci right 3.433085e-04	k: 977	n:3030000
Cons ci ratio: 1.089845e-03	ci left: 8.097950e-01	ci right 8.106783e-01	k: 2455018	n:3030000
KS ci ratio: 1.253275e-01	ci left: 3.025409e-04	ci right 3.433085e-04	k: 977	n:3030000
ZMYND8   3030000 perm   4709 sec   (643 perm/sec)   p_kst 3.224422e-04   p_cons 8.102370e-01   p_joint 3.224422e-04

Joint ci ratio: 1.252635e-01	ci left: 3.018643e-04	ci right 3.425184e-04	k: 978	n:3040000
Cons ci ratio: 1.088065e-03	ci left: 8.097916e-01	ci right 8.106735e-01	k: 2463108	n:3040000
KS ci ratio: 1.252635e-01	ci left: 3.018643e-04	ci right 3.425184e-04	k: 978	n:3040000
ZMYND8   3040000 perm   4737 sec   (642 perm/sec)   p_kst 3.217105e-04   p_cons 8.102329e-01   p_joint 3.217105e-04

Joint ci ratio: 1.251358e-01	ci left: 3.015098e-04	ci right 3.420717e-04	k: 980	n:3050000
Cons ci ratio: 1.086278e-03	ci left: 8.097929e-01	ci right 8.106734e-01	k: 2471212	n:3050000
KS ci ratio: 1.251358e-01	ci left: 3.015098e-04	ci right 3.420717e-04	k: 980	n:3050000
ZMYND8   3050000 perm   4765 sec   (640 perm/sec)   p_kst 3.213115e-04   p_cons 8.102334e-01   p_joint 3.213115e-04

Joint ci ratio: 1.249449e-01	ci left: 3.014742e-04	ci right 3.419648e-04	k: 983	n:3060000
Cons ci ratio: 1.084469e-03	ci left: 8.098030e-01	ci right 8.106820e-01	k: 2479343	n:3060000
KS ci ratio: 1.249449e-01	ci left: 3.014742e-04	ci right 3.419648e-04	k: 983	n:3060000
ZMYND8   3060000 perm   4794 sec   (638 perm/sec)   p_kst 3.212418e-04   p_cons 8.102428e-01   p_joint 3.212418e-04

Joint ci ratio: 1.247549e-01	ci left: 3.014389e-04	ci right 3.418587e-04	k: 986	n:3070000
Cons ci ratio: 1.082779e-03	ci left: 8.097814e-01	ci right 8.106590e-01	k: 2487377	n:3070000
KS ci ratio: 1.247549e-01	ci left: 3.014389e-04	ci right 3.418587e-04	k: 986	n:3070000
ZMYND8   3070000 perm   4823 sec   (636 perm/sec)   p_kst 3.211726e-04   p_cons 8.102205e-01   p_joint 3.211726e-04

Joint ci ratio: 1.246918e-01	ci left: 3.007747e-04	ci right 3.410835e-04	k: 987	n:3080000
Cons ci ratio: 1.081000e-03	ci left: 8.097879e-01	ci right 8.106641e-01	k: 2495497	n:3080000
KS ci ratio: 1.246918e-01	ci left: 3.007747e-04	ci right 3.410835e-04	k: 987	n:3080000
ZMYND8   3080000 perm   4852 sec   (635 perm/sec)   p_kst 3.204545e-04   p_cons 8.102263e-01   p_joint 3.204545e-04

Joint ci ratio: 1.243774e-01	ci left: 3.013691e-04	ci right 3.416482e-04	k: 992	n:3090000
Cons ci ratio: 1.079272e-03	ci left: 8.097821e-01	ci right 8.106568e-01	k: 2503579	n:3090000
KS ci ratio: 1.243774e-01	ci left: 3.013691e-04	ci right 3.416482e-04	k: 992	n:3090000
ZMYND8   3090000 perm   4881 sec   (633 perm/sec)   p_kst 3.210356e-04   p_cons 8.102197e-01   p_joint 3.210356e-04

Joint ci ratio: 1.241277e-01	ci left: 3.016471e-04	ci right 3.418765e-04	k: 996	n:3100000
Cons ci ratio: 1.077530e-03	ci left: 8.097827e-01	ci right 8.106561e-01	k: 2511681	n:3100000
KS ci ratio: 1.241277e-01	ci left: 3.016471e-04	ci right 3.418765e-04	k: 996	n:3100000
ZMYND8   3100000 perm   4909 sec   (631 perm/sec)   p_kst 3.212903e-04   p_cons 8.102197e-01   p_joint 3.212903e-04

Joint ci ratio: 1.239413e-01	ci left: 3.016119e-04	ci right 3.417718e-04	k: 999	n:3110000
Cons ci ratio: 1.075772e-03	ci left: 8.097904e-01	ci right 8.106624e-01	k: 2519805	n:3110000
KS ci ratio: 1.239413e-01	ci left: 3.016119e-04	ci right 3.417718e-04	k: 999	n:3110000
ZMYND8   3110000 perm   4938 sec   (630 perm/sec)   p_kst 3.212219e-04   p_cons 8.102267e-01   p_joint 3.212219e-04

Joint ci ratio: 1.236942e-01	ci left: 3.018876e-04	ci right 3.419981e-04	k: 1003	n:3120000
Cons ci ratio: 1.074048e-03	ci left: 8.097907e-01	ci right 8.106613e-01	k: 2527906	n:3120000
KS ci ratio: 1.236942e-01	ci left: 3.018876e-04	ci right 3.419981e-04	k: 1003	n:3120000
ZMYND8   3120000 perm   4968 sec   (628 perm/sec)   p_kst 3.214744e-04   p_cons 8.102263e-01   p_joint 3.214744e-04

Joint ci ratio: 1.232651e-01	ci left: 3.030904e-04	ci right 3.432109e-04	k: 1010	n:3130000
Cons ci ratio: 1.072358e-03	ci left: 8.097837e-01	ci right 8.106528e-01	k: 2535984	n:3130000
KS ci ratio: 1.232651e-01	ci left: 3.030904e-04	ci right 3.432109e-04	k: 1010	n:3130000
ZMYND8   3130000 perm   4997 sec   (626 perm/sec)   p_kst 3.226837e-04   p_cons 8.102185e-01   p_joint 3.226837e-04

Joint ci ratio: 1.231434e-01	ci left: 3.027425e-04	ci right 3.427744e-04	k: 1012	n:3140000
Cons ci ratio: 1.070689e-03	ci left: 8.097728e-01	ci right 8.106406e-01	k: 2544050	n:3140000
KS ci ratio: 1.231434e-01	ci left: 3.027425e-04	ci right 3.427744e-04	k: 1012	n:3140000
ZMYND8   3140000 perm   5026 sec   (625 perm/sec)   p_kst 3.222930e-04   p_cons 8.102070e-01   p_joint 3.222930e-04

Joint ci ratio: 1.229010e-01	ci left: 3.030122e-04	ci right 3.429952e-04	k: 1016	n:3150000
Cons ci ratio: 1.068962e-03	ci left: 8.097811e-01	ci right 8.106475e-01	k: 2552176	n:3150000
KS ci ratio: 1.229010e-01	ci left: 3.030122e-04	ci right 3.429952e-04	k: 1016	n:3150000
ZMYND8   3150000 perm   5056 sec   (623 perm/sec)   p_kst 3.225397e-04   p_cons 8.102146e-01   p_joint 3.225397e-04

Joint ci ratio: 1.226600e-01	ci left: 3.032802e-04	ci right 3.432144e-04	k: 1020	n:3160000
Cons ci ratio: 1.067210e-03	ci left: 8.097989e-01	ci right 8.106639e-01	k: 2560332	n:3160000
KS ci ratio: 1.226600e-01	ci left: 3.032802e-04	ci right 3.432144e-04	k: 1020	n:3160000
ZMYND8   3160000 perm   5086 sec   (621 perm/sec)   p_kst 3.227848e-04   p_cons 8.102316e-01   p_joint 3.227848e-04

Joint ci ratio: 1.223607e-01	ci left: 3.038524e-04	ci right 3.437573e-04	k: 1025	n:3170000
Cons ci ratio: 1.065497e-03	ci left: 8.098077e-01	ci right 8.106713e-01	k: 2568460	n:3170000
KS ci ratio: 1.223607e-01	ci left: 3.038524e-04	ci right 3.437573e-04	k: 1025	n:3170000
ZMYND8   3170000 perm   5115 sec   (620 perm/sec)   p_kst 3.233438e-04   p_cons 8.102397e-01   p_joint 3.233438e-04

Joint ci ratio: 1.221229e-01	ci left: 3.041163e-04	ci right 3.439726e-04	k: 1029	n:3180000
Cons ci ratio: 1.063779e-03	ci left: 8.098205e-01	ci right 8.106827e-01	k: 2576601	n:3180000
KS ci ratio: 1.221229e-01	ci left: 3.041163e-04	ci right 3.439726e-04	k: 1029	n:3180000
ZMYND8   3180000 perm   5145 sec   (618 perm/sec)   p_kst 3.235849e-04   p_cons 8.102519e-01   p_joint 3.235849e-04

Joint ci ratio: 1.219454e-01	ci left: 3.040747e-04	ci right 3.438635e-04	k: 1032	n:3190000
Cons ci ratio: 1.062146e-03	ci left: 8.098107e-01	ci right 8.106715e-01	k: 2584670	n:3190000
KS ci ratio: 1.219454e-01	ci left: 3.040747e-04	ci right 3.438635e-04	k: 1032	n:3190000
ZMYND8   3190000 perm   5174 sec   (616 perm/sec)   p_kst 3.235110e-04   p_cons 8.102414e-01   p_joint 3.235110e-04

Joint ci ratio: 1.218276e-01	ci left: 3.037304e-04	ci right 3.434329e-04	k: 1034	n:3200000
Cons ci ratio: 1.060542e-03	ci left: 8.097949e-01	ci right 8.106545e-01	k: 2592720	n:3200000
KS ci ratio: 1.218276e-01	ci left: 3.037304e-04	ci right 3.434329e-04	k: 1034	n:3200000
ZMYND8   3200000 perm   5204 sec   (615 perm/sec)   p_kst 3.231250e-04   p_cons 8.102250e-01   p_joint 3.231250e-04

Joint ci ratio: 1.215928e-01	ci left: 3.039924e-04	ci right 3.436471e-04	k: 1038	n:3210000
Cons ci ratio: 1.058866e-03	ci left: 8.098021e-01	ci right 8.106603e-01	k: 2600843	n:3210000
KS ci ratio: 1.215928e-01	ci left: 3.039924e-04	ci right 3.436471e-04	k: 1038	n:3210000
ZMYND8   3210000 perm   5234 sec   (613 perm/sec)   p_kst 3.233645e-04   p_cons 8.102315e-01   p_joint 3.233645e-04

Joint ci ratio: 1.213013e-01	ci left: 3.045539e-04	ci right 3.441798e-04	k: 1043	n:3220000
Cons ci ratio: 1.057233e-03	ci left: 8.097992e-01	ci right 8.106561e-01	k: 2608934	n:3220000
KS ci ratio: 1.213013e-01	ci left: 3.045539e-04	ci right 3.441798e-04	k: 1043	n:3220000
ZMYND8   3220000 perm   5264 sec   (612 perm/sec)   p_kst 3.239130e-04   p_cons 8.102280e-01   p_joint 3.239130e-04

Joint ci ratio: 1.213013e-01	ci left: 3.036110e-04	ci right 3.431142e-04	k: 1043	n:3230000
Cons ci ratio: 1.055609e-03	ci left: 8.097958e-01	ci right 8.106513e-01	k: 2617023	n:3230000
KS ci ratio: 1.213013e-01	ci left: 3.036110e-04	ci right 3.431142e-04	k: 1043	n:3230000
ZMYND8   3230000 perm   5294 sec   (610 perm/sec)   p_kst 3.229102e-04   p_cons 8.102238e-01   p_joint 3.229102e-04

Joint ci ratio: 1.211853e-01	ci left: 3.032725e-04	ci right 3.426912e-04	k: 1045	n:3240000
Cons ci ratio: 1.053964e-03	ci left: 8.098007e-01	ci right 8.106549e-01	k: 2625139	n:3240000
KS ci ratio: 1.211853e-01	ci left: 3.032725e-04	ci right 3.426912e-04	k: 1045	n:3240000
ZMYND8   3240000 perm   5325 sec   (608 perm/sec)   p_kst 3.225309e-04   p_cons 8.102281e-01   p_joint 3.225309e-04

Joint ci ratio: 1.210119e-01	ci left: 3.032345e-04	ci right 3.425878e-04	k: 1048	n:3250000
Cons ci ratio: 1.052342e-03	ci left: 8.098013e-01	ci right 8.106542e-01	k: 2633241	n:3250000
KS ci ratio: 1.210119e-01	ci left: 3.032345e-04	ci right 3.425878e-04	k: 1048	n:3250000
ZMYND8   3250000 perm   5355 sec   (607 perm/sec)   p_kst 3.224615e-04   p_cons 8.102280e-01   p_joint 3.224615e-04

Joint ci ratio: 1.207818e-01	ci left: 3.034942e-04	ci right 3.428010e-04	k: 1052	n:3260000
Cons ci ratio: 1.050775e-03	ci left: 8.097877e-01	ci right 8.106393e-01	k: 2641297	n:3260000
KS ci ratio: 1.207818e-01	ci left: 3.034942e-04	ci right 3.428010e-04	k: 1052	n:3260000
ZMYND8   3260000 perm   5385 sec   (605 perm/sec)   p_kst 3.226994e-04   p_cons 8.102138e-01   p_joint 3.226994e-04

Joint ci ratio: 1.207246e-01	ci left: 3.028627e-04	ci right 3.420677e-04	k: 1053	n:3270000
Cons ci ratio: 1.049141e-03	ci left: 8.097960e-01	ci right 8.106463e-01	k: 2649424	n:3270000
KS ci ratio: 1.207246e-01	ci left: 3.028627e-04	ci right 3.420677e-04	k: 1053	n:3270000
ZMYND8   3270000 perm   5416 sec   (604 perm/sec)   p_kst 3.220183e-04   p_cons 8.102214e-01   p_joint 3.220183e-04

Joint ci ratio: 1.207246e-01	ci left: 3.019393e-04	ci right 3.410249e-04	k: 1053	n:3280000
Cons ci ratio: 1.047542e-03	ci left: 8.097962e-01	ci right 8.106453e-01	k: 2657525	n:3280000
KS ci ratio: 1.207246e-01	ci left: 3.019393e-04	ci right 3.410249e-04	k: 1053	n:3280000
ZMYND8   3280000 perm   5447 sec   (602 perm/sec)   p_kst 3.210366e-04   p_cons 8.102210e-01   p_joint 3.210366e-04

Joint ci ratio: 1.204962e-01	ci left: 3.022007e-04	ci right 3.412408e-04	k: 1057	n:3290000
Cons ci ratio: 1.045887e-03	ci left: 8.098151e-01	ci right 8.106628e-01	k: 2665687	n:3290000
KS ci ratio: 1.204962e-01	ci left: 3.022007e-04	ci right 3.412408e-04	k: 1057	n:3290000
ZMYND8   3290000 perm   5477 sec   (601 perm/sec)   p_kst 3.212766e-04   p_cons 8.102392e-01   p_joint 3.212766e-04

Joint ci ratio: 1.204393e-01	ci left: 3.015788e-04	ci right 3.405189e-04	k: 1058	n:3300000
Cons ci ratio: 1.044296e-03	ci left: 8.098171e-01	ci right 8.106635e-01	k: 2673794	n:3300000
KS ci ratio: 1.204393e-01	ci left: 3.015788e-04	ci right 3.405189e-04	k: 1058	n:3300000
ZMYND8   3300000 perm   5508 sec   (599 perm/sec)   p_kst 3.206061e-04   p_cons 8.102406e-01   p_joint 3.206061e-04

Joint ci ratio: 1.200432e-01	ci left: 3.027189e-04	ci right 3.416685e-04	k: 1065	n:3310000
Cons ci ratio: 1.042723e-03	ci left: 8.098161e-01	ci right 8.106613e-01	k: 2681891	n:3310000
KS ci ratio: 1.200432e-01	ci left: 3.027189e-04	ci right 3.416685e-04	k: 1065	n:3310000
ZMYND8   3310000 perm   5538 sec   (598 perm/sec)   p_kst 3.217523e-04   p_cons 8.102390e-01   p_joint 3.217523e-04

Joint ci ratio: 1.197626e-01	ci left: 3.032680e-04	ci right 3.421905e-04	k: 1070	n:3320000
Cons ci ratio: 1.041077e-03	ci left: 8.098390e-01	ci right 8.106828e-01	k: 2690067	n:3320000
KS ci ratio: 1.197626e-01	ci left: 3.032680e-04	ci right 3.421905e-04	k: 1070	n:3320000
ZMYND8   3320000 perm   5568 sec   (596 perm/sec)   p_kst 3.222892e-04   p_cons 8.102611e-01   p_joint 3.222892e-04

Joint ci ratio: 1.194285e-01	ci left: 3.041052e-04	ci right 3.430186e-04	k: 1076	n:3330000
Cons ci ratio: 1.039511e-03	ci left: 8.098400e-01	ci right 8.106826e-01	k: 2698171	n:3330000
KS ci ratio: 1.194285e-01	ci left: 3.041052e-04	ci right 3.430186e-04	k: 1076	n:3330000
ZMYND8   3330000 perm   5599 sec   (595 perm/sec)   p_kst 3.231231e-04   p_cons 8.102616e-01   p_joint 3.231231e-04

Joint ci ratio: 1.193178e-01	ci left: 3.037756e-04	ci right 3.426083e-04	k: 1078	n:3340000
Cons ci ratio: 1.037969e-03	ci left: 8.098360e-01	ci right 8.106773e-01	k: 2706258	n:3340000
KS ci ratio: 1.193178e-01	ci left: 3.037756e-04	ci right 3.426083e-04	k: 1078	n:3340000
ZMYND8   3340000 perm   5630 sec   (593 perm/sec)   p_kst 3.227545e-04   p_cons 8.102569e-01   p_joint 3.227545e-04

Joint ci ratio: 1.190972e-01	ci left: 3.040272e-04	ci right 3.428152e-04	k: 1082	n:3350000
Cons ci ratio: 1.036348e-03	ci left: 8.098576e-01	ci right 8.106976e-01	k: 2714431	n:3350000
KS ci ratio: 1.190972e-01	ci left: 3.040272e-04	ci right 3.428152e-04	k: 1082	n:3350000
ZMYND8   3350000 perm   5662 sec   (592 perm/sec)   p_kst 3.229851e-04   p_cons 8.102779e-01   p_joint 3.229851e-04

Joint ci ratio: 1.190423e-01	ci left: 3.034111e-04	ci right 3.421014e-04	k: 1083	n:3360000
Cons ci ratio: 1.034758e-03	ci left: 8.098723e-01	ci right 8.107111e-01	k: 2722581	n:3360000
KS ci ratio: 1.190423e-01	ci left: 3.034111e-04	ci right 3.421014e-04	k: 1083	n:3360000
ZMYND8   3360000 perm   5693 sec   (590 perm/sec)   p_kst 3.223214e-04   p_cons 8.102920e-01   p_joint 3.223214e-04

Joint ci ratio: 1.187687e-01	ci left: 3.039504e-04	ci right 3.426140e-04	k: 1088	n:3370000
Cons ci ratio: 1.033223e-03	ci left: 8.098724e-01	ci right 8.107099e-01	k: 2730682	n:3370000
KS ci ratio: 1.187687e-01	ci left: 3.039504e-04	ci right 3.426140e-04	k: 1088	n:3370000
ZMYND8   3370000 perm   5724 sec   (589 perm/sec)   p_kst 3.228487e-04   p_cons 8.102914e-01   p_joint 3.228487e-04

Joint ci ratio: 1.185511e-01	ci left: 3.041994e-04	ci right 3.428189e-04	k: 1092	n:3380000
Cons ci ratio: 1.031709e-03	ci left: 8.098683e-01	ci right 8.107046e-01	k: 2738769	n:3380000
KS ci ratio: 1.185511e-01	ci left: 3.041994e-04	ci right 3.428189e-04	k: 1092	n:3380000
ZMYND8   3380000 perm   5756 sec   (587 perm/sec)   p_kst 3.230769e-04   p_cons 8.102867e-01   p_joint 3.230769e-04

Joint ci ratio: 1.183348e-01	ci left: 3.044471e-04	ci right 3.430225e-04	k: 1096	n:3390000
Cons ci ratio: 1.030239e-03	ci left: 8.098533e-01	ci right 8.106884e-01	k: 2746819	n:3390000
KS ci ratio: 1.183348e-01	ci left: 3.044471e-04	ci right 3.430225e-04	k: 1096	n:3390000
ZMYND8   3390000 perm   5788 sec   (586 perm/sec)   p_kst 3.233038e-04   p_cons 8.102711e-01   p_joint 3.233038e-04

Joint ci ratio: 1.182271e-01	ci left: 3.041224e-04	ci right 3.426193e-04	k: 1098	n:3400000
Cons ci ratio: 1.028728e-03	ci left: 8.098522e-01	ci right 8.106861e-01	k: 2754916	n:3400000
KS ci ratio: 1.182271e-01	ci left: 3.041224e-04	ci right 3.426193e-04	k: 1098	n:3400000
ZMYND8   3400000 perm   5819 sec   (584 perm/sec)   p_kst 3.229412e-04   p_cons 8.102694e-01   p_joint 3.229412e-04

Joint ci ratio: 1.180125e-01	ci left: 3.043690e-04	ci right 3.428222e-04	k: 1102	n:3410000
Cons ci ratio: 1.027164e-03	ci left: 8.098691e-01	ci right 8.107017e-01	k: 2763074	n:3410000
KS ci ratio: 1.180125e-01	ci left: 3.043690e-04	ci right 3.428222e-04	k: 1102	n:3410000
ZMYND8   3410000 perm   5851 sec   (583 perm/sec)   p_kst 3.231672e-04   p_cons 8.102856e-01   p_joint 3.231672e-04

Joint ci ratio: 1.178523e-01	ci left: 3.043303e-04	ci right 3.427228e-04	k: 1105	n:3420000
Cons ci ratio: 1.025663e-03	ci left: 8.098691e-01	ci right 8.107005e-01	k: 2771175	n:3420000
KS ci ratio: 1.178523e-01	ci left: 3.043303e-04	ci right 3.427228e-04	k: 1105	n:3420000
ZMYND8   3420000 perm   5882 sec   (581 perm/sec)   p_kst 3.230994e-04   p_cons 8.102851e-01   p_joint 3.230994e-04

Joint ci ratio: 1.176928e-01	ci left: 3.042919e-04	ci right 3.426240e-04	k: 1108	n:3430000
Cons ci ratio: 1.024162e-03	ci left: 8.098713e-01	ci right 8.107014e-01	k: 2779283	n:3430000
KS ci ratio: 1.176928e-01	ci left: 3.042919e-04	ci right 3.426240e-04	k: 1108	n:3430000
ZMYND8   3430000 perm   5914 sec   (580 perm/sec)   p_kst 3.230321e-04   p_cons 8.102866e-01   p_joint 3.230321e-04

Joint ci ratio: 1.175340e-01	ci left: 3.042538e-04	ci right 3.425258e-04	k: 1111	n:3440000
Cons ci ratio: 1.022697e-03	ci left: 8.098646e-01	ci right 8.106936e-01	k: 2787361	n:3440000
KS ci ratio: 1.175340e-01	ci left: 3.042538e-04	ci right 3.425258e-04	k: 1111	n:3440000
ZMYND8   3440000 perm   5946 sec   (578 perm/sec)   p_kst 3.229651e-04   p_cons 8.102794e-01   p_joint 3.229651e-04

Joint ci ratio: 1.172181e-01	ci left: 3.050600e-04	ci right 3.433231e-04	k: 1117	n:3450000
Cons ci ratio: 1.021201e-03	ci left: 8.098691e-01	ci right 8.106968e-01	k: 2795477	n:3450000
KS ci ratio: 1.172181e-01	ci left: 3.050600e-04	ci right 3.433231e-04	k: 1117	n:3450000
ZMYND8   3450000 perm   5979 sec   (577 perm/sec)   p_kst 3.237681e-04   p_cons 8.102832e-01   p_joint 3.237681e-04

Joint ci ratio: 1.170612e-01	ci left: 3.050199e-04	ci right 3.432233e-04	k: 1120	n:3460000
Cons ci ratio: 1.019716e-03	ci left: 8.098720e-01	ci right 8.106986e-01	k: 2803588	n:3460000
KS ci ratio: 1.170612e-01	ci left: 3.050199e-04	ci right 3.432233e-04	k: 1120	n:3460000
ZMYND8   3460000 perm   6011 sec   (576 perm/sec)   p_kst 3.236994e-04   p_cons 8.102855e-01   p_joint 3.236994e-04

Joint ci ratio: 1.170090e-01	ci left: 3.044207e-04	ci right 3.425308e-04	k: 1121	n:3470000
Cons ci ratio: 1.018232e-03	ci left: 8.098767e-01	ci right 8.107020e-01	k: 2811705	n:3470000
KS ci ratio: 1.170090e-01	ci left: 3.044207e-04	ci right 3.425308e-04	k: 1121	n:3470000
ZMYND8   3470000 perm   6043 sec   (574 perm/sec)   p_kst 3.230548e-04   p_cons 8.102896e-01   p_joint 3.230548e-04

Joint ci ratio: 1.169049e-01	ci left: 3.041038e-04	ci right 3.421380e-04	k: 1123	n:3480000
Cons ci ratio: 1.016758e-03	ci left: 8.098805e-01	ci right 8.107046e-01	k: 2819819	n:3480000
KS ci ratio: 1.169049e-01	ci left: 3.041038e-04	ci right 3.421380e-04	k: 1123	n:3480000
ZMYND8   3480000 perm   6075 sec   (573 perm/sec)   p_kst 3.227011e-04   p_cons 8.102928e-01   p_joint 3.227011e-04

Joint ci ratio: 1.165941e-01	ci left: 3.049014e-04	ci right 3.429271e-04	k: 1129	n:3490000
Cons ci ratio: 1.015307e-03	ci left: 8.098788e-01	ci right 8.107018e-01	k: 2827914	n:3490000
KS ci ratio: 1.165941e-01	ci left: 3.049014e-04	ci right 3.429271e-04	k: 1129	n:3490000
ZMYND8   3490000 perm   6107 sec   (571 perm/sec)   p_kst 3.234957e-04   p_cons 8.102905e-01   p_joint 3.234957e-04

Joint ci ratio: 1.164396e-01	ci left: 3.048624e-04	ci right 3.428294e-04	k: 1132	n:3500000
Cons ci ratio: 1.013833e-03	ci left: 8.098863e-01	ci right 8.107081e-01	k: 2836041	n:3500000
KS ci ratio: 1.164396e-01	ci left: 3.048624e-04	ci right 3.428294e-04	k: 1132	n:3500000
ZMYND8   3500000 perm   6140 sec   (570 perm/sec)   p_kst 3.234286e-04   p_cons 8.102974e-01   p_joint 3.234286e-04

Joint ci ratio: 1.163370e-01	ci left: 3.045471e-04	ci right 3.424391e-04	k: 1134	n:3510000
Cons ci ratio: 1.012404e-03	ci left: 8.098820e-01	ci right 8.107026e-01	k: 2844127	n:3510000
KS ci ratio: 1.163370e-01	ci left: 3.045471e-04	ci right 3.424391e-04	k: 1134	n:3510000
ZMYND8   3510000 perm   6174 sec   (569 perm/sec)   p_kst 3.230769e-04   p_cons 8.102926e-01   p_joint 3.230769e-04

Joint ci ratio: 1.161325e-01	ci left: 3.047852e-04	ci right 3.426356e-04	k: 1138	n:3520000
Cons ci ratio: 1.010953e-03	ci left: 8.098863e-01	ci right 8.107058e-01	k: 2852243	n:3520000
KS ci ratio: 1.161325e-01	ci left: 3.047852e-04	ci right 3.426356e-04	k: 1138	n:3520000
ZMYND8   3520000 perm   6207 sec   (567 perm/sec)   p_kst 3.232955e-04   p_cons 8.102963e-01   p_joint 3.232955e-04

Joint ci ratio: 1.160816e-01	ci left: 3.041969e-04	ci right 3.419565e-04	k: 1139	n:3530000
Cons ci ratio: 1.009568e-03	ci left: 8.098722e-01	ci right 8.106905e-01	k: 2860294	n:3530000
KS ci ratio: 1.160816e-01	ci left: 3.041969e-04	ci right 3.419565e-04	k: 1139	n:3530000
ZMYND8   3530000 perm   6241 sec   (566 perm/sec)   p_kst 3.226629e-04   p_cons 8.102816e-01   p_joint 3.226629e-04

Joint ci ratio: 1.160308e-01	ci left: 3.036118e-04	ci right 3.412812e-04	k: 1140	n:3540000
Cons ci ratio: 1.008175e-03	ci left: 8.098624e-01	ci right 8.106795e-01	k: 2868360	n:3540000
KS ci ratio: 1.160308e-01	ci left: 3.036118e-04	ci right 3.412812e-04	k: 1140	n:3540000
ZMYND8   3540000 perm   6273 sec   (564 perm/sec)   p_kst 3.220339e-04   p_cons 8.102712e-01   p_joint 3.220339e-04

Joint ci ratio: 1.159292e-01	ci left: 3.033036e-04	ci right 3.408995e-04	k: 1142	n:3550000
Cons ci ratio: 1.006754e-03	ci left: 8.098630e-01	ci right 8.106790e-01	k: 2876463	n:3550000
KS ci ratio: 1.159292e-01	ci left: 3.033036e-04	ci right 3.408995e-04	k: 1142	n:3550000
ZMYND8   3550000 perm   6306 sec   (563 perm/sec)   p_kst 3.216901e-04   p_cons 8.102713e-01   p_joint 3.216901e-04

Joint ci ratio: 1.157269e-01	ci left: 3.035427e-04	ci right 3.410981e-04	k: 1146	n:3560000
Cons ci ratio: 1.005306e-03	ci left: 8.098738e-01	ci right 8.106886e-01	k: 2884602	n:3560000
KS ci ratio: 1.157269e-01	ci left: 3.035427e-04	ci right 3.410981e-04	k: 1146	n:3560000
ZMYND8   3560000 perm   6339 sec   (562 perm/sec)   p_kst 3.219101e-04   p_cons 8.102815e-01   p_joint 3.219101e-04

Joint ci ratio: 1.156765e-01	ci left: 3.029644e-04	ci right 3.404309e-04	k: 1147	n:3570000
Cons ci ratio: 1.003955e-03	ci left: 8.098565e-01	ci right 8.106702e-01	k: 2892641	n:3570000
KS ci ratio: 1.156765e-01	ci left: 3.029644e-04	ci right 3.404309e-04	k: 1147	n:3570000
ZMYND8   3570000 perm   6372 sec   (560 perm/sec)   p_kst 3.212885e-04   p_cons 8.102636e-01   p_joint 3.212885e-04

Joint ci ratio: 1.155759e-01	ci left: 3.026607e-04	ci right 3.400547e-04	k: 1149	n:3580000
Cons ci ratio: 1.002506e-03	ci left: 8.098711e-01	ci right 8.106837e-01	k: 2900794	n:3580000
KS ci ratio: 1.155759e-01	ci left: 3.026607e-04	ci right 3.400547e-04	k: 1149	n:3580000
ZMYND8   3580000 perm   6405 sec   (559 perm/sec)   p_kst 3.209497e-04   p_cons 8.102777e-01   p_joint 3.209497e-04

Joint ci ratio: 1.152257e-01	ci left: 3.037112e-04	ci right 3.411136e-04	k: 1156	n:3590000
Cons ci ratio: 1.001177e-03	ci left: 8.098506e-01	ci right 8.106620e-01	k: 2908821	n:3590000
KS ci ratio: 1.152257e-01	ci left: 3.037112e-04	ci right 3.411136e-04	k: 1156	n:3590000
ZMYND8   3590000 perm   6438 sec   (558 perm/sec)   p_kst 3.220056e-04   p_cons 8.102565e-01   p_joint 3.220056e-04

Joint ci ratio: 1.150270e-01	ci left: 3.039467e-04	ci right 3.413092e-04	k: 1160	n:3600000
Cons ci ratio: 9.997593e-04	ci left: 8.098593e-01	ci right 8.106696e-01	k: 2916953	n:3600000
KS ci ratio: 1.150270e-01	ci left: 3.039467e-04	ci right 3.413092e-04	k: 1160	n:3600000
ZMYND8   3600000 perm   6472 sec   (556 perm/sec)   p_kst 3.222222e-04   p_cons 8.102647e-01   p_joint 3.222222e-04

Joint ci ratio: 1.147309e-01	ci left: 3.047190e-04	ci right 3.420735e-04	k: 1166	n:3610000
Cons ci ratio: 9.983490e-04	ci left: 8.098675e-01	ci right 8.106766e-01	k: 2925083	n:3610000
KS ci ratio: 1.147309e-01	ci left: 3.047190e-04	ci right 3.420735e-04	k: 1166	n:3610000
ZMYND8   3610000 perm   6505 sec   (555 perm/sec)   p_kst 3.229917e-04   p_cons 8.102723e-01   p_joint 3.229917e-04

Joint ci ratio: 1.146327e-01	ci left: 3.044139e-04	ci right 3.416969e-04	k: 1168	n:3620000
Cons ci ratio: 9.969931e-04	ci left: 8.098606e-01	ci right 8.106687e-01	k: 2933159	n:3620000
KS ci ratio: 1.146327e-01	ci left: 3.044139e-04	ci right 3.416969e-04	k: 1168	n:3620000
ZMYND8   3620000 perm   6539 sec   (554 perm/sec)   p_kst 3.226519e-04   p_cons 8.102649e-01   p_joint 3.226519e-04

Joint ci ratio: 1.144859e-01	ci left: 3.043780e-04	ci right 3.416057e-04	k: 1171	n:3630000
Cons ci ratio: 9.956409e-04	ci left: 8.098544e-01	ci right 8.106614e-01	k: 2941237	n:3630000
KS ci ratio: 1.144859e-01	ci left: 3.043780e-04	ci right 3.416057e-04	k: 1171	n:3630000
ZMYND8   3630000 perm   6572 sec   (552 perm/sec)   p_kst 3.225895e-04   p_cons 8.102581e-01   p_joint 3.225895e-04

Joint ci ratio: 1.142910e-01	ci left: 3.046093e-04	ci right 3.417975e-04	k: 1175	n:3640000
Cons ci ratio: 9.942612e-04	ci left: 8.098584e-01	ci right 8.106642e-01	k: 2949352	n:3640000
KS ci ratio: 1.142910e-01	ci left: 3.046093e-04	ci right 3.417975e-04	k: 1175	n:3640000
ZMYND8   3640000 perm   6606 sec   (551 perm/sec)   p_kst 3.228022e-04   p_cons 8.102615e-01   p_joint 3.228022e-04

Joint ci ratio: 1.141940e-01	ci left: 3.043070e-04	ci right 3.414247e-04	k: 1177	n:3650000
Cons ci ratio: 9.929820e-04	ci left: 8.098330e-01	ci right 8.106378e-01	k: 2957360	n:3650000
KS ci ratio: 1.141940e-01	ci left: 3.043070e-04	ci right 3.414247e-04	k: 1177	n:3650000
ZMYND8   3650000 perm   6639 sec   (550 perm/sec)   p_kst 3.224658e-04   p_cons 8.102356e-01   p_joint 3.224658e-04

Joint ci ratio: 1.140972e-01	ci left: 3.040064e-04	ci right 3.410539e-04	k: 1179	n:3660000
Cons ci ratio: 9.916407e-04	ci left: 8.098285e-01	ci right 8.106322e-01	k: 2965444	n:3660000
KS ci ratio: 1.140972e-01	ci left: 3.040064e-04	ci right 3.410539e-04	k: 1179	n:3660000
ZMYND8   3660000 perm   6673 sec   (548 perm/sec)   p_kst 3.221311e-04   p_cons 8.102306e-01   p_joint 3.221311e-04

Joint ci ratio: 1.139043e-01	ci left: 3.042369e-04	ci right 3.412456e-04	k: 1183	n:3670000
Cons ci ratio: 9.903198e-04	ci left: 8.098194e-01	ci right 8.106221e-01	k: 2973511	n:3670000
KS ci ratio: 1.139043e-01	ci left: 3.042369e-04	ci right 3.412456e-04	k: 1183	n:3670000
ZMYND8   3670000 perm   6707 sec   (547 perm/sec)   p_kst 3.223433e-04   p_cons 8.102210e-01   p_joint 3.223433e-04

Joint ci ratio: 1.137603e-01	ci left: 3.042022e-04	ci right 3.411567e-04	k: 1186	n:3680000
Cons ci ratio: 9.889552e-04	ci left: 8.098256e-01	ci right 8.106272e-01	k: 2981634	n:3680000
KS ci ratio: 1.137603e-01	ci left: 3.042022e-04	ci right 3.411567e-04	k: 1186	n:3680000
ZMYND8   3680000 perm   6741 sec   (546 perm/sec)   p_kst 3.222826e-04   p_cons 8.102266e-01   p_joint 3.222826e-04

Joint ci ratio: 1.135691e-01	ci left: 3.044310e-04	ci right 3.413470e-04	k: 1190	n:3690000
Cons ci ratio: 9.875683e-04	ci left: 8.098405e-01	ci right 8.106409e-01	k: 2989789	n:3690000
KS ci ratio: 1.135691e-01	ci left: 3.044310e-04	ci right 3.413470e-04	k: 1190	n:3690000
ZMYND8   3690000 perm   6774 sec   (545 perm/sec)   p_kst 3.224932e-04   p_cons 8.102409e-01   p_joint 3.224932e-04

Joint ci ratio: 1.134738e-01	ci left: 3.041334e-04	ci right 3.409803e-04	k: 1192	n:3700000
Cons ci ratio: 9.862705e-04	ci left: 8.098293e-01	ci right 8.106286e-01	k: 2997848	n:3700000
KS ci ratio: 1.134738e-01	ci left: 3.041334e-04	ci right 3.409803e-04	k: 1192	n:3700000
ZMYND8   3700000 perm   6808 sec   (543 perm/sec)   p_kst 3.221622e-04   p_cons 8.102292e-01   p_joint 3.221622e-04

Joint ci ratio: 1.132368e-01	ci left: 3.046231e-04	ci right 3.414471e-04	k: 1197	n:3710000
Cons ci ratio: 9.849389e-04	ci left: 8.098303e-01	ci right 8.106285e-01	k: 3005952	n:3710000
KS ci ratio: 1.132368e-01	ci left: 3.046231e-04	ci right 3.414471e-04	k: 1197	n:3710000
ZMYND8   3710000 perm   6843 sec   (542 perm/sec)   p_kst 3.226415e-04   p_cons 8.102296e-01   p_joint 3.226415e-04

Joint ci ratio: 1.129073e-01	ci left: 3.056328e-04	ci right 3.424641e-04	k: 1204	n:3720000
Cons ci ratio: 9.835964e-04	ci left: 8.098364e-01	ci right 8.106336e-01	k: 3014075	n:3720000
KS ci ratio: 1.129073e-01	ci left: 3.056328e-04	ci right 3.424641e-04	k: 1204	n:3720000
ZMYND8   3720000 perm   6876 sec   (541 perm/sec)   p_kst 3.236559e-04   p_cons 8.102352e-01   p_joint 3.236559e-04

Joint ci ratio: 1.129074e-01	ci left: 3.048134e-04	ci right 3.415460e-04	k: 1204	n:3730000
Cons ci ratio: 9.823398e-04	ci left: 8.098172e-01	ci right 8.106134e-01	k: 3022104	n:3730000
KS ci ratio: 1.129074e-01	ci left: 3.048134e-04	ci right 3.415460e-04	k: 1204	n:3730000
ZMYND8   3730000 perm   6911 sec   (540 perm/sec)   p_kst 3.227882e-04   p_cons 8.102155e-01   p_joint 3.227882e-04

Joint ci ratio: 1.126273e-01	ci left: 3.055574e-04	ci right 3.422823e-04	k: 1210	n:3740000
Cons ci ratio: 9.810599e-04	ci left: 8.098070e-01	ci right 8.106021e-01	k: 3030166	n:3740000
KS ci ratio: 1.126273e-01	ci left: 3.055574e-04	ci right 3.422823e-04	k: 1210	n:3740000
ZMYND8   3740000 perm   6945 sec   (539 perm/sec)   p_kst 3.235294e-04   p_cons 8.102048e-01   p_joint 3.235294e-04

Joint ci ratio: 1.124880e-01	ci left: 3.055201e-04	ci right 3.421921e-04	k: 1213	n:3750000
Cons ci ratio: 9.797204e-04	ci left: 8.098171e-01	ci right 8.106112e-01	k: 3038304	n:3750000
KS ci ratio: 1.124880e-01	ci left: 3.055201e-04	ci right 3.421921e-04	k: 1213	n:3750000
ZMYND8   3750000 perm   6979 sec   (537 perm/sec)   p_kst 3.234667e-04   p_cons 8.102144e-01   p_joint 3.234667e-04

Joint ci ratio: 1.124418e-01	ci left: 3.049660e-04	ci right 3.415554e-04	k: 1214	n:3760000
Cons ci ratio: 9.783897e-04	ci left: 8.098262e-01	ci right 8.106191e-01	k: 3046438	n:3760000
KS ci ratio: 1.124418e-01	ci left: 3.049660e-04	ci right 3.415554e-04	k: 1214	n:3760000
ZMYND8   3760000 perm   7014 sec   (536 perm/sec)   p_kst 3.228723e-04   p_cons 8.102229e-01   p_joint 3.228723e-04

Joint ci ratio: 1.122111e-01	ci left: 3.054461e-04	ci right 3.420129e-04	k: 1219	n:3770000
Cons ci ratio: 9.771201e-04	ci left: 8.098176e-01	ci right 8.106095e-01	k: 3054506	n:3770000
KS ci ratio: 1.122111e-01	ci left: 3.054461e-04	ci right 3.420129e-04	k: 1219	n:3770000
ZMYND8   3770000 perm   7048 sec   (535 perm/sec)   p_kst 3.233422e-04   p_cons 8.102138e-01   p_joint 3.233422e-04

Joint ci ratio: 1.119818e-01	ci left: 3.059237e-04	ci right 3.424679e-04	k: 1224	n:3780000
Cons ci ratio: 9.758664e-04	ci left: 8.098056e-01	ci right 8.105965e-01	k: 3062561	n:3780000
KS ci ratio: 1.119818e-01	ci left: 3.059237e-04	ci right 3.424679e-04	k: 1224	n:3780000
ZMYND8   3780000 perm   7082 sec   (534 perm/sec)   p_kst 3.238095e-04   p_cons 8.102013e-01   p_joint 3.238095e-04

Joint ci ratio: 1.118450e-01	ci left: 3.058859e-04	ci right 3.423780e-04	k: 1227	n:3790000
Cons ci ratio: 9.745271e-04	ci left: 8.098223e-01	ci right 8.106121e-01	k: 3070724	n:3790000
KS ci ratio: 1.118450e-01	ci left: 3.058859e-04	ci right 3.423780e-04	k: 1227	n:3790000
ZMYND8   3790000 perm   7117 sec   (533 perm/sec)   p_kst 3.237467e-04   p_cons 8.102174e-01   p_joint 3.237467e-04

Joint ci ratio: 1.117540e-01	ci left: 3.055925e-04	ci right 3.420181e-04	k: 1229	n:3800000
Cons ci ratio: 9.732275e-04	ci left: 8.098280e-01	ci right 8.106168e-01	k: 3078846	n:3800000
KS ci ratio: 1.117540e-01	ci left: 3.055925e-04	ci right 3.420181e-04	k: 1229	n:3800000
ZMYND8   3800000 perm   7151 sec   (531 perm/sec)   p_kst 3.234211e-04   p_cons 8.102226e-01   p_joint 3.234211e-04

Joint ci ratio: 1.115275e-01	ci left: 3.060661e-04	ci right 3.424694e-04	k: 1234	n:3810000
Cons ci ratio: 9.719380e-04	ci left: 8.098321e-01	ci right 8.106199e-01	k: 3086962	n:3810000
KS ci ratio: 1.115275e-01	ci left: 3.060661e-04	ci right 3.424694e-04	k: 1234	n:3810000
ZMYND8   3810000 perm   7185 sec   (530 perm/sec)   p_kst 3.238845e-04   p_cons 8.102262e-01   p_joint 3.238845e-04

Joint ci ratio: 1.114374e-01	ci left: 3.057739e-04	ci right 3.421110e-04	k: 1236	n:3820000
Cons ci ratio: 9.706462e-04	ci left: 8.098386e-01	ci right 8.106253e-01	k: 3095087	n:3820000
KS ci ratio: 1.114374e-01	ci left: 3.057739e-04	ci right 3.421110e-04	k: 1236	n:3820000
ZMYND8   3820000 perm   7220 sec   (529 perm/sec)   p_kst 3.235602e-04   p_cons 8.102322e-01   p_joint 3.235602e-04

Joint ci ratio: 1.113025e-01	ci left: 3.057370e-04	ci right 3.420229e-04	k: 1239	n:3830000
Cons ci ratio: 9.693694e-04	ci left: 8.098419e-01	ci right 8.106276e-01	k: 3103200	n:3830000
KS ci ratio: 1.113025e-01	ci left: 3.057370e-04	ci right 3.420229e-04	k: 1239	n:3830000
ZMYND8   3830000 perm   7256 sec   (528 perm/sec)   p_kst 3.234987e-04   p_cons 8.102350e-01   p_joint 3.234987e-04

Joint ci ratio: 1.111681e-01	ci left: 3.057003e-04	ci right 3.419351e-04	k: 1242	n:3840000
Cons ci ratio: 9.681141e-04	ci left: 8.098400e-01	ci right 8.106246e-01	k: 3111293	n:3840000
KS ci ratio: 1.111681e-01	ci left: 3.057003e-04	ci right 3.419351e-04	k: 1242	n:3840000
ZMYND8   3840000 perm   7291 sec   (527 perm/sec)   p_kst 3.234375e-04   p_cons 8.102326e-01   p_joint 3.234375e-04

Joint ci ratio: 1.110788e-01	ci left: 3.054113e-04	ci right 3.415809e-04	k: 1244	n:3850000
Cons ci ratio: 9.668105e-04	ci left: 8.098550e-01	ci right 8.106386e-01	k: 3119451	n:3850000
KS ci ratio: 1.110788e-01	ci left: 3.054113e-04	ci right 3.415809e-04	k: 1244	n:3850000
ZMYND8   3850000 perm   7326 sec   (526 perm/sec)   p_kst 3.231169e-04   p_cons 8.102470e-01   p_joint 3.231169e-04

Joint ci ratio: 1.109452e-01	ci left: 3.053757e-04	ci right 3.414948e-04	k: 1247	n:3860000
Cons ci ratio: 9.655732e-04	ci left: 8.098504e-01	ci right 8.106330e-01	k: 3127534	n:3860000
KS ci ratio: 1.109452e-01	ci left: 3.053757e-04	ci right 3.414948e-04	k: 1247	n:3860000
ZMYND8   3860000 perm   7361 sec   (524 perm/sec)   p_kst 3.230570e-04   p_cons 8.102420e-01   p_joint 3.230570e-04

Joint ci ratio: 1.109452e-01	ci left: 3.045866e-04	ci right 3.406124e-04	k: 1247	n:3870000
Cons ci ratio: 9.643495e-04	ci left: 8.098431e-01	ci right 8.106247e-01	k: 3135606	n:3870000
KS ci ratio: 1.109452e-01	ci left: 3.045866e-04	ci right 3.406124e-04	k: 1247	n:3870000
ZMYND8   3870000 perm   7397 sec   (523 perm/sec)   p_kst 3.222222e-04   p_cons 8.102341e-01   p_joint 3.222222e-04

Joint ci ratio: 1.109453e-01	ci left: 3.038016e-04	ci right 3.397345e-04	k: 1247	n:3880000
Cons ci ratio: 9.630772e-04	ci left: 8.098528e-01	ci right 8.106334e-01	k: 3143744	n:3880000
KS ci ratio: 1.109453e-01	ci left: 3.038016e-04	ci right 3.397345e-04	k: 1247	n:3880000
ZMYND8   3880000 perm   7433 sec   (522 perm/sec)   p_kst 3.213918e-04   p_cons 8.102433e-01   p_joint 3.213918e-04

Joint ci ratio: 1.107237e-01	ci left: 3.042703e-04	ci right 3.401821e-04	k: 1252	n:3890000
Cons ci ratio: 9.618815e-04	ci left: 8.098395e-01	ci right 8.106191e-01	k: 3151793	n:3890000
KS ci ratio: 1.107237e-01	ci left: 3.042703e-04	ci right 3.401821e-04	k: 1252	n:3890000
ZMYND8   3890000 perm   7468 sec   (521 perm/sec)   p_kst 3.218509e-04   p_cons 8.102296e-01   p_joint 3.218509e-04

Joint ci ratio: 1.104595e-01	ci left: 3.049861e-04	ci right 3.408908e-04	k: 1258	n:3900000
Cons ci ratio: 9.606293e-04	ci left: 8.098459e-01	ci right 8.106244e-01	k: 3159918	n:3900000
KS ci ratio: 1.104595e-01	ci left: 3.049861e-04	ci right 3.408908e-04	k: 1258	n:3900000
ZMYND8   3900000 perm   7504 sec   (520 perm/sec)   p_kst 3.225641e-04   p_cons 8.102354e-01   p_joint 3.225641e-04

Joint ci ratio: 1.102844e-01	ci left: 3.052008e-04	ci right 3.410702e-04	k: 1262	n:3910000
Cons ci ratio: 9.593820e-04	ci left: 8.098522e-01	ci right 8.106297e-01	k: 3168043	n:3910000
KS ci ratio: 1.102844e-01	ci left: 3.052008e-04	ci right 3.410702e-04	k: 1262	n:3910000
ZMYND8   3910000 perm   7539 sec   (519 perm/sec)   p_kst 3.227621e-04   p_cons 8.102412e-01   p_joint 3.227621e-04

Joint ci ratio: 1.101537e-01	ci left: 3.051665e-04	ci right 3.409866e-04	k: 1265	n:3920000
Cons ci ratio: 9.581730e-04	ci left: 8.098477e-01	ci right 8.106243e-01	k: 3176126	n:3920000
KS ci ratio: 1.101537e-01	ci left: 3.051665e-04	ci right 3.409866e-04	k: 1265	n:3920000
ZMYND8   3920000 perm   7575 sec   (517 perm/sec)   p_kst 3.227041e-04   p_cons 8.102362e-01   p_joint 3.227041e-04

Joint ci ratio: 1.101102e-01	ci left: 3.046374e-04	ci right 3.403804e-04	k: 1266	n:3930000
Cons ci ratio: 9.569764e-04	ci left: 8.098407e-01	ci right 8.106163e-01	k: 3184199	n:3930000
KS ci ratio: 1.101102e-01	ci left: 3.046374e-04	ci right 3.403804e-04	k: 1266	n:3930000
ZMYND8   3930000 perm   7612 sec   (516 perm/sec)   p_kst 3.221374e-04   p_cons 8.102288e-01   p_joint 3.221374e-04

Joint ci ratio: 1.099801e-01	ci left: 3.046047e-04	ci right 3.402988e-04	k: 1269	n:3940000
Cons ci ratio: 9.557875e-04	ci left: 8.098328e-01	ci right 8.106074e-01	k: 3192268	n:3940000
KS ci ratio: 1.099801e-01	ci left: 3.046047e-04	ci right 3.402988e-04	k: 1269	n:3940000
ZMYND8   3940000 perm   7649 sec   (515 perm/sec)   p_kst 3.220812e-04   p_cons 8.102203e-01   p_joint 3.220812e-04

Joint ci ratio: 1.098936e-01	ci left: 3.043259e-04	ci right 3.399576e-04	k: 1271	n:3950000
Cons ci ratio: 9.545511e-04	ci left: 8.098416e-01	ci right 8.106152e-01	k: 3200403	n:3950000
KS ci ratio: 1.098936e-01	ci left: 3.043259e-04	ci right 3.399576e-04	k: 1271	n:3950000
ZMYND8   3950000 perm   7685 sec   (514 perm/sec)   p_kst 3.217722e-04   p_cons 8.102286e-01   p_joint 3.217722e-04

Joint ci ratio: 1.097643e-01	ci left: 3.042942e-04	ci right 3.398775e-04	k: 1274	n:3960000
Cons ci ratio: 9.533445e-04	ci left: 8.098422e-01	ci right 8.106149e-01	k: 3208506	n:3960000
KS ci ratio: 1.097643e-01	ci left: 3.042942e-04	ci right 3.398775e-04	k: 1274	n:3960000
ZMYND8   3960000 perm   7721 sec   (513 perm/sec)   p_kst 3.217172e-04   p_cons 8.102288e-01   p_joint 3.217172e-04

Joint ci ratio: 1.096783e-01	ci left: 3.040177e-04	ci right 3.395390e-04	k: 1276	n:3970000
Cons ci ratio: 9.522010e-04	ci left: 8.098240e-01	ci right 8.105957e-01	k: 3216534	n:3970000
KS ci ratio: 1.096783e-01	ci left: 3.040177e-04	ci right 3.395390e-04	k: 1276	n:3970000
ZMYND8   3970000 perm   7759 sec   (512 perm/sec)   p_kst 3.214106e-04   p_cons 8.102101e-01   p_joint 3.214106e-04

Joint ci ratio: 1.095925e-01	ci left: 3.037425e-04	ci right 3.392021e-04	k: 1278	n:3980000
Cons ci ratio: 9.510258e-04	ci left: 8.098174e-01	ci right 8.105882e-01	k: 3224608	n:3980000
KS ci ratio: 1.095925e-01	ci left: 3.037425e-04	ci right 3.392021e-04	k: 1278	n:3980000
ZMYND8   3980000 perm   7795 sec   (511 perm/sec)   p_kst 3.211055e-04   p_cons 8.102030e-01   p_joint 3.211055e-04

Joint ci ratio: 1.093789e-01	ci left: 3.042001e-04	ci right 3.396394e-04	k: 1283	n:3990000
Cons ci ratio: 9.498140e-04	ci left: 8.098242e-01	ci right 8.105939e-01	k: 3232735	n:3990000
KS ci ratio: 1.093789e-01	ci left: 3.042001e-04	ci right 3.396394e-04	k: 1283	n:3990000
ZMYND8   3990000 perm   7832 sec   (509 perm/sec)   p_kst 3.215539e-04   p_cons 8.102093e-01   p_joint 3.215539e-04

Joint ci ratio: 1.092089e-01	ci left: 3.044123e-04	ci right 3.398177e-04	k: 1287	n:4000000
Cons ci ratio: 9.485998e-04	ci left: 8.098331e-01	ci right 8.106019e-01	k: 3240871	n:4000000
KS ci ratio: 1.092089e-01	ci left: 3.044123e-04	ci right 3.398177e-04	k: 1287	n:4000000
ZMYND8   4000000 perm   7869 sec   (508 perm/sec)   p_kst 3.217500e-04   p_cons 8.102177e-01   p_joint 3.217500e-04

Joint ci ratio: 1.090820e-01	ci left: 3.043808e-04	ci right 3.397388e-04	k: 1290	n:4010000
Cons ci ratio: 9.474618e-04	ci left: 8.098188e-01	ci right 8.105867e-01	k: 3248914	n:4010000
KS ci ratio: 1.090820e-01	ci left: 3.043808e-04	ci right 3.397388e-04	k: 1290	n:4010000
ZMYND8   4010000 perm   7905 sec   (507 perm/sec)   p_kst 3.216958e-04   p_cons 8.102030e-01   p_joint 3.216958e-04

Joint ci ratio: 1.089555e-01	ci left: 3.043496e-04	ci right 3.396603e-04	k: 1293	n:4020000
Cons ci ratio: 9.462620e-04	ci left: 8.098260e-01	ci right 8.105929e-01	k: 3257043	n:4020000
KS ci ratio: 1.089555e-01	ci left: 3.043496e-04	ci right 3.396603e-04	k: 1293	n:4020000
ZMYND8   4020000 perm   7942 sec   (506 perm/sec)   p_kst 3.216418e-04   p_cons 8.102097e-01   p_joint 3.216418e-04

Joint ci ratio: 1.087874e-01	ci left: 3.045599e-04	ci right 3.398370e-04	k: 1297	n:4030000
Cons ci ratio: 9.450652e-04	ci left: 8.098337e-01	ci right 8.105996e-01	k: 3265174	n:4030000
KS ci ratio: 1.087874e-01	ci left: 3.045599e-04	ci right 3.398370e-04	k: 1297	n:4030000
ZMYND8   4030000 perm   7979 sec   (505 perm/sec)   p_kst 3.218362e-04   p_cons 8.102169e-01   p_joint 3.218362e-04

Joint ci ratio: 1.085368e-01	ci left: 3.052508e-04	ci right 3.405213e-04	k: 1303	n:4040000
Cons ci ratio: 9.439079e-04	ci left: 8.098299e-01	ci right 8.105949e-01	k: 3273259	n:4040000
KS ci ratio: 1.085368e-01	ci left: 3.052508e-04	ci right 3.405213e-04	k: 1303	n:4040000
ZMYND8   4040000 perm   8017 sec   (504 perm/sec)   p_kst 3.225248e-04   p_cons 8.102126e-01   p_joint 3.225248e-04

Joint ci ratio: 1.084953e-01	ci left: 3.047373e-04	ci right 3.399341e-04	k: 1304	n:4050000
Cons ci ratio: 9.427525e-04	ci left: 8.098269e-01	ci right 8.105909e-01	k: 3281347	n:4050000
KS ci ratio: 1.084953e-01	ci left: 3.047373e-04	ci right 3.399341e-04	k: 1304	n:4050000
ZMYND8   4050000 perm   8054 sec   (503 perm/sec)   p_kst 3.219753e-04   p_cons 8.102091e-01   p_joint 3.219753e-04

Joint ci ratio: 1.083708e-01	ci left: 3.047056e-04	ci right 3.398558e-04	k: 1307	n:4060000
Cons ci ratio: 9.415750e-04	ci left: 8.098325e-01	ci right 8.105956e-01	k: 3289470	n:4060000
KS ci ratio: 1.083708e-01	ci left: 3.047056e-04	ci right 3.398558e-04	k: 1307	n:4060000
ZMYND8   4060000 perm   8092 sec   (502 perm/sec)   p_kst 3.219212e-04   p_cons 8.102143e-01   p_joint 3.219212e-04

Joint ci ratio: 1.083294e-01	ci left: 3.041960e-04	ci right 3.392731e-04	k: 1308	n:4070000
Cons ci ratio: 9.404432e-04	ci left: 8.098246e-01	ci right 8.105868e-01	k: 3297538	n:4070000
KS ci ratio: 1.083294e-01	ci left: 3.041960e-04	ci right 3.392731e-04	k: 1308	n:4070000
ZMYND8   4070000 perm   8129 sec   (501 perm/sec)   p_kst 3.213759e-04   p_cons 8.102059e-01   p_joint 3.213759e-04

Joint ci ratio: 1.081643e-01	ci left: 3.044043e-04	ci right 3.394485e-04	k: 1312	n:4080000
Cons ci ratio: 9.393282e-04	ci left: 8.098125e-01	ci right 8.105738e-01	k: 3305589	n:4080000
KS ci ratio: 1.081643e-01	ci left: 3.044043e-04	ci right 3.394485e-04	k: 1312	n:4080000
ZMYND8   4080000 perm   8166 sec   (500 perm/sec)   p_kst 3.215686e-04   p_cons 8.101934e-01   p_joint 3.215686e-04

Joint ci ratio: 1.079999e-01	ci left: 3.046116e-04	ci right 3.396230e-04	k: 1316	n:4090000
Cons ci ratio: 9.381881e-04	ci left: 8.098101e-01	ci right 8.105704e-01	k: 3313679	n:4090000
KS ci ratio: 1.079999e-01	ci left: 3.046116e-04	ci right 3.396230e-04	k: 1316	n:4090000
ZMYND8   4090000 perm   8204 sec   (499 perm/sec)   p_kst 3.217604e-04   p_cons 8.101905e-01   p_joint 3.217604e-04

Joint ci ratio: 1.078362e-01	ci left: 3.048179e-04	ci right 3.397966e-04	k: 1320	n:4100000
Cons ci ratio: 9.370254e-04	ci left: 8.098164e-01	ci right 8.105758e-01	k: 3321805	n:4100000
KS ci ratio: 1.078362e-01	ci left: 3.048179e-04	ci right 3.397966e-04	k: 1320	n:4100000
ZMYND8   4100000 perm   8242 sec   (497 perm/sec)   p_kst 3.219512e-04   p_cons 8.101963e-01   p_joint 3.219512e-04

Joint ci ratio: 1.076327e-01	ci left: 3.052600e-04	ci right 3.402191e-04	k: 1325	n:4110000
Cons ci ratio: 9.358965e-04	ci left: 8.098130e-01	ci right 8.105715e-01	k: 3329891	n:4110000
KS ci ratio: 1.076327e-01	ci left: 3.052600e-04	ci right 3.402191e-04	k: 1325	n:4110000
ZMYND8   4110000 perm   8281 sec   (496 perm/sec)   p_kst 3.223844e-04   p_cons 8.101925e-01   p_joint 3.223844e-04

Joint ci ratio: 1.075111e-01	ci left: 3.052277e-04	ci right 3.401411e-04	k: 1328	n:4120000
Cons ci ratio: 9.347541e-04	ci left: 8.098154e-01	ci right 8.105730e-01	k: 3338001	n:4120000
KS ci ratio: 1.075111e-01	ci left: 3.052277e-04	ci right 3.401411e-04	k: 1328	n:4120000
ZMYND8   4120000 perm   8319 sec   (495 perm/sec)   p_kst 3.223301e-04   p_cons 8.101944e-01   p_joint 3.223301e-04

Joint ci ratio: 1.073497e-01	ci left: 3.054311e-04	ci right 3.403120e-04	k: 1332	n:4130000
Cons ci ratio: 9.336607e-04	ci left: 8.098030e-01	ci right 8.105597e-01	k: 3346050	n:4130000
KS ci ratio: 1.073497e-01	ci left: 3.054311e-04	ci right 3.403120e-04	k: 1332	n:4130000
ZMYND8   4130000 perm   8356 sec   (494 perm/sec)   p_kst 3.225182e-04   p_cons 8.101816e-01   p_joint 3.225182e-04

Joint ci ratio: 1.073497e-01	ci left: 3.046933e-04	ci right 3.394900e-04	k: 1332	n:4140000
Cons ci ratio: 9.325147e-04	ci left: 8.098094e-01	ci right 8.105651e-01	k: 3354176	n:4140000
KS ci ratio: 1.073497e-01	ci left: 3.046933e-04	ci right 3.394900e-04	k: 1332	n:4140000
ZMYND8   4140000 perm   8394 sec   (493 perm/sec)   p_kst 3.217391e-04   p_cons 8.101874e-01   p_joint 3.217391e-04

Joint ci ratio: 1.071490e-01	ci left: 3.051316e-04	ci right 3.399091e-04	k: 1337	n:4150000
Cons ci ratio: 9.313867e-04	ci left: 8.098110e-01	ci right 8.105659e-01	k: 3362283	n:4150000
KS ci ratio: 1.071490e-01	ci left: 3.051316e-04	ci right 3.399091e-04	k: 1337	n:4150000
ZMYND8   4150000 perm   8432 sec   (492 perm/sec)   p_kst 3.221687e-04   p_cons 8.101887e-01   p_joint 3.221687e-04

Joint ci ratio: 1.069095e-01	ci left: 3.058019e-04	ci right 3.405729e-04	k: 1343	n:4160000
Cons ci ratio: 9.302978e-04	ci left: 8.098012e-01	ci right 8.105551e-01	k: 3370342	n:4160000
KS ci ratio: 1.069095e-01	ci left: 3.058019e-04	ci right 3.405729e-04	k: 1343	n:4160000
ZMYND8   4160000 perm   8471 sec   (491 perm/sec)   p_kst 3.228365e-04   p_cons 8.101784e-01   p_joint 3.228365e-04

Joint ci ratio: 1.067111e-01	ci left: 3.062355e-04	ci right 3.409872e-04	k: 1348	n:4170000
Cons ci ratio: 9.292119e-04	ci left: 8.097916e-01	ci right 8.105447e-01	k: 3378402	n:4170000
KS ci ratio: 1.067111e-01	ci left: 3.062355e-04	ci right 3.409872e-04	k: 1348	n:4170000
ZMYND8   4170000 perm   8509 sec   (490 perm/sec)   p_kst 3.232614e-04   p_cons 8.101683e-01   p_joint 3.232614e-04

Joint ci ratio: 1.065533e-01	ci left: 3.064343e-04	ci right 3.411539e-04	k: 1352	n:4180000
Cons ci ratio: 9.281176e-04	ci left: 8.097861e-01	ci right 8.105383e-01	k: 3386479	n:4180000
KS ci ratio: 1.065533e-01	ci left: 3.064343e-04	ci right 3.411539e-04	k: 1352	n:4180000
ZMYND8   4180000 perm   8547 sec   (489 perm/sec)   p_kst 3.234450e-04   p_cons 8.101624e-01   p_joint 3.234450e-04

Joint ci ratio: 1.064746e-01	ci left: 3.061676e-04	ci right 3.408298e-04	k: 1354	n:4190000
Cons ci ratio: 9.269609e-04	ci left: 8.098027e-01	ci right 8.105539e-01	k: 3394648	n:4190000
KS ci ratio: 1.064746e-01	ci left: 3.061676e-04	ci right 3.408298e-04	k: 1354	n:4190000
ZMYND8   4190000 perm   8586 sec   (488 perm/sec)   p_kst 3.231504e-04   p_cons 8.101785e-01   p_joint 3.231504e-04

Joint ci ratio: 1.063570e-01	ci left: 3.061339e-04	ci right 3.407516e-04	k: 1357	n:4200000
Cons ci ratio: 9.259039e-04	ci left: 8.097875e-01	ci right 8.105378e-01	k: 3402684	n:4200000
KS ci ratio: 1.063570e-01	ci left: 3.061339e-04	ci right 3.407516e-04	k: 1357	n:4200000
ZMYND8   4200000 perm   8624 sec   (487 perm/sec)   p_kst 3.230952e-04   p_cons 8.101629e-01   p_joint 3.230952e-04

Joint ci ratio: 1.062397e-01	ci left: 3.061004e-04	ci right 3.406737e-04	k: 1360	n:4210000
Cons ci ratio: 9.248169e-04	ci left: 8.097835e-01	ci right 8.105330e-01	k: 3410767	n:4210000
KS ci ratio: 1.062397e-01	ci left: 3.061004e-04	ci right 3.406737e-04	k: 1360	n:4210000
ZMYND8   4210000 perm   8662 sec   (486 perm/sec)   p_kst 3.230404e-04   p_cons 8.101584e-01   p_joint 3.230404e-04

Joint ci ratio: 1.060450e-01	ci left: 3.065284e-04	ci right 3.410827e-04	k: 1365	n:4220000
Cons ci ratio: 9.236775e-04	ci left: 8.097983e-01	ci right 8.105468e-01	k: 3418929	n:4220000
KS ci ratio: 1.060450e-01	ci left: 3.065284e-04	ci right 3.410827e-04	k: 1365	n:4220000
ZMYND8   4220000 perm   8700 sec   (485 perm/sec)   p_kst 3.234597e-04   p_cons 8.101727e-01   p_joint 3.234597e-04

Joint ci ratio: 1.058515e-01	ci left: 3.069545e-04	ci right 3.414897e-04	k: 1370	n:4230000
Cons ci ratio: 9.226302e-04	ci left: 8.097836e-01	ci right 8.105313e-01	k: 3426967	n:4230000
KS ci ratio: 1.058515e-01	ci left: 3.069545e-04	ci right 3.414897e-04	k: 1370	n:4230000
ZMYND8   4230000 perm   8738 sec   (484 perm/sec)   p_kst 3.238771e-04   p_cons 8.101577e-01   p_joint 3.238771e-04

Joint ci ratio: 1.057359e-01	ci left: 3.069194e-04	ci right 3.414105e-04	k: 1373	n:4240000
Cons ci ratio: 9.214946e-04	ci left: 8.097997e-01	ci right 8.105465e-01	k: 3435135	n:4240000
KS ci ratio: 1.057359e-01	ci left: 3.069194e-04	ci right 3.414105e-04	k: 1373	n:4240000
ZMYND8   4240000 perm   8776 sec   (483 perm/sec)   p_kst 3.238208e-04   p_cons 8.101733e-01   p_joint 3.238208e-04

Joint ci ratio: 1.056590e-01	ci left: 3.066553e-04	ci right 3.410903e-04	k: 1375	n:4250000
Cons ci ratio: 9.204019e-04	ci left: 8.098028e-01	ci right 8.105487e-01	k: 3443248	n:4250000
KS ci ratio: 1.056590e-01	ci left: 3.066553e-04	ci right 3.410903e-04	k: 1375	n:4250000
ZMYND8   4250000 perm   8815 sec   (482 perm/sec)   p_kst 3.235294e-04   p_cons 8.101760e-01   p_joint 3.235294e-04

Joint ci ratio: 1.055440e-01	ci left: 3.066211e-04	ci right 3.410124e-04	k: 1378	n:4260000
Cons ci ratio: 9.193202e-04	ci left: 8.098036e-01	ci right 8.105486e-01	k: 3451351	n:4260000
KS ci ratio: 1.055440e-01	ci left: 3.066211e-04	ci right 3.410124e-04	k: 1378	n:4260000
ZMYND8   4260000 perm   8854 sec   (481 perm/sec)   p_kst 3.234742e-04   p_cons 8.101763e-01   p_joint 3.234742e-04

Joint ci ratio: 1.053913e-01	ci left: 3.068151e-04	ci right 3.411752e-04	k: 1382	n:4270000
Cons ci ratio: 9.182037e-04	ci left: 8.098172e-01	ci right 8.105613e-01	k: 3459509	n:4270000
KS ci ratio: 1.053913e-01	ci left: 3.068151e-04	ci right 3.411752e-04	k: 1382	n:4270000
ZMYND8   4270000 perm   8893 sec   (480 perm/sec)   p_kst 3.236534e-04   p_cons 8.101895e-01   p_joint 3.236534e-04

Joint ci ratio: 1.052392e-01	ci left: 3.070082e-04	ci right 3.413373e-04	k: 1386	n:4280000
Cons ci ratio: 9.171241e-04	ci left: 8.098197e-01	ci right 8.105630e-01	k: 3467620	n:4280000
KS ci ratio: 1.052392e-01	ci left: 3.070082e-04	ci right 3.413373e-04	k: 1386	n:4280000
ZMYND8   4280000 perm   8932 sec   (479 perm/sec)   p_kst 3.238318e-04   p_cons 8.101916e-01   p_joint 3.238318e-04

Joint ci ratio: 1.050500e-01	ci left: 3.074274e-04	ci right 3.417378e-04	k: 1391	n:4290000
Cons ci ratio: 9.160552e-04	ci left: 8.098200e-01	ci right 8.105624e-01	k: 3475721	n:4290000
KS ci ratio: 1.050500e-01	ci left: 3.074274e-04	ci right 3.417378e-04	k: 1391	n:4290000
ZMYND8   4290000 perm   8972 sec   (478 perm/sec)   p_kst 3.242424e-04   p_cons 8.101914e-01   p_joint 3.242424e-04

Joint ci ratio: 1.049370e-01	ci left: 3.073918e-04	ci right 3.416590e-04	k: 1394	n:4300000
Cons ci ratio: 9.150052e-04	ci left: 8.098151e-01	ci right 8.105566e-01	k: 3483800	n:4300000
KS ci ratio: 1.049370e-01	ci left: 3.073918e-04	ci right 3.416590e-04	k: 1394	n:4300000
ZMYND8   4300000 perm   9011 sec   (477 perm/sec)   p_kst 3.241860e-04   p_cons 8.101860e-01   p_joint 3.241860e-04

Joint ci ratio: 1.048618e-01	ci left: 3.071305e-04	ci right 3.413425e-04	k: 1396	n:4310000
Cons ci ratio: 9.138961e-04	ci left: 8.098313e-01	ci right 8.105720e-01	k: 3491970	n:4310000
KS ci ratio: 1.048618e-01	ci left: 3.071305e-04	ci right 3.413425e-04	k: 1396	n:4310000
ZMYND8   4310000 perm   9051 sec   (476 perm/sec)   p_kst 3.238979e-04   p_cons 8.102019e-01   p_joint 3.238979e-04

Joint ci ratio: 1.047869e-01	ci left: 3.068704e-04	ci right 3.410275e-04	k: 1398	n:4320000
Cons ci ratio: 9.128948e-04	ci left: 8.098125e-01	ci right 8.105523e-01	k: 3499989	n:4320000
KS ci ratio: 1.047869e-01	ci left: 3.068704e-04	ci right 3.410275e-04	k: 1398	n:4320000
ZMYND8   4320000 perm   9090 sec   (475 perm/sec)   p_kst 3.236111e-04   p_cons 8.101826e-01   p_joint 3.236111e-04

Joint ci ratio: 1.047121e-01	ci left: 3.066114e-04	ci right 3.407139e-04	k: 1400	n:4330000
Cons ci ratio: 9.118769e-04	ci left: 8.098005e-01	ci right 8.105395e-01	k: 3508037	n:4330000
KS ci ratio: 1.047121e-01	ci left: 3.066114e-04	ci right 3.407139e-04	k: 1400	n:4330000
ZMYND8   4330000 perm   9129 sec   (474 perm/sec)   p_kst 3.233256e-04   p_cons 8.101702e-01   p_joint 3.233256e-04

Joint ci ratio: 1.045257e-01	ci left: 3.070269e-04	ci right 3.411110e-04	k: 1405	n:4340000
Cons ci ratio: 9.107792e-04	ci left: 8.098167e-01	ci right 8.105548e-01	k: 3516207	n:4340000
KS ci ratio: 1.045257e-01	ci left: 3.070269e-04	ci right 3.411110e-04	k: 1405	n:4340000
ZMYND8   4340000 perm   9168 sec   (473 perm/sec)   p_kst 3.237327e-04   p_cons 8.101859e-01   p_joint 3.237327e-04

Joint ci ratio: 1.044143e-01	ci left: 3.069927e-04	ci right 3.410345e-04	k: 1408	n:4350000
Cons ci ratio: 9.097737e-04	ci left: 8.098029e-01	ci right 8.105402e-01	k: 3524247	n:4350000
KS ci ratio: 1.044143e-01	ci left: 3.069927e-04	ci right 3.410345e-04	k: 1408	n:4350000
ZMYND8   4350000 perm   9207 sec   (472 perm/sec)   p_kst 3.236782e-04   p_cons 8.101717e-01   p_joint 3.236782e-04

Joint ci ratio: 1.043773e-01	ci left: 3.065120e-04	ci right 3.404877e-04	k: 1409	n:4360000
Cons ci ratio: 9.087439e-04	ci left: 8.097985e-01	ci right 8.105350e-01	k: 3532328	n:4360000
KS ci ratio: 1.043773e-01	ci left: 3.065120e-04	ci right 3.404877e-04	k: 1409	n:4360000
ZMYND8   4360000 perm   9247 sec   (472 perm/sec)   p_kst 3.231651e-04   p_cons 8.101670e-01   p_joint 3.231651e-04

Joint ci ratio: 1.043404e-01	ci left: 3.060334e-04	ci right 3.399433e-04	k: 1410	n:4370000
Cons ci ratio: 9.077350e-04	ci left: 8.097883e-01	ci right 8.105239e-01	k: 3540383	n:4370000
KS ci ratio: 1.043404e-01	ci left: 3.060334e-04	ci right 3.399433e-04	k: 1410	n:4370000
ZMYND8   4370000 perm   9287 sec   (471 perm/sec)   p_kst 3.226545e-04   p_cons 8.101563e-01   p_joint 3.226545e-04

Joint ci ratio: 1.041560e-01	ci left: 3.064465e-04	ci right 3.403385e-04	k: 1415	n:4380000
Cons ci ratio: 9.067296e-04	ci left: 8.097781e-01	ci right 8.105129e-01	k: 3548438	n:4380000
KS ci ratio: 1.041560e-01	ci left: 3.064465e-04	ci right 3.403385e-04	k: 1415	n:4380000
ZMYND8   4380000 perm   9327 sec   (470 perm/sec)   p_kst 3.230594e-04   p_cons 8.101457e-01   p_joint 3.230594e-04

Joint ci ratio: 1.039725e-01	ci left: 3.068578e-04	ci right 3.407318e-04	k: 1420	n:4390000
Cons ci ratio: 9.056771e-04	ci left: 8.097850e-01	ci right 8.105189e-01	k: 3556568	n:4390000
KS ci ratio: 1.039725e-01	ci left: 3.068578e-04	ci right 3.407318e-04	k: 1420	n:4390000
ZMYND8   4390000 perm   9367 sec   (469 perm/sec)   p_kst 3.234624e-04   p_cons 8.101522e-01   p_joint 3.234624e-04

Joint ci ratio: 1.038265e-01	ci left: 3.070458e-04	ci right 3.408901e-04	k: 1424	n:4400000
Cons ci ratio: 9.046550e-04	ci left: 8.097828e-01	ci right 8.105159e-01	k: 3564658	n:4400000
KS ci ratio: 1.038265e-01	ci left: 3.070458e-04	ci right 3.408901e-04	k: 1424	n:4400000
ZMYND8   4400000 perm   9408 sec   (468 perm/sec)   p_kst 3.236364e-04   p_cons 8.101495e-01   p_joint 3.236364e-04

Joint ci ratio: 1.036811e-01	ci left: 3.072331e-04	ci right 3.410477e-04	k: 1428	n:4410000
Cons ci ratio: 9.036111e-04	ci left: 8.097892e-01	ci right 8.105215e-01	k: 3572786	n:4410000
KS ci ratio: 1.036811e-01	ci left: 3.072331e-04	ci right 3.410477e-04	k: 1428	n:4410000
ZMYND8   4410000 perm   9448 sec   (467 perm/sec)   p_kst 3.238095e-04   p_cons 8.101556e-01   p_joint 3.238095e-04

Joint ci ratio: 1.035002e-01	ci left: 3.076399e-04	ci right 3.414366e-04	k: 1433	n:4420000
Cons ci ratio: 9.026239e-04	ci left: 8.097775e-01	ci right 8.105090e-01	k: 3580834	n:4420000
KS ci ratio: 1.035002e-01	ci left: 3.076399e-04	ci right 3.414366e-04	k: 1433	n:4420000
ZMYND8   4420000 perm   9488 sec   (466 perm/sec)   p_kst 3.242081e-04   p_cons 8.101434e-01   p_joint 3.242081e-04

Joint ci ratio: 1.032843e-01	ci left: 3.082648e-04	ci right 3.420553e-04	k: 1439	n:4430000
Cons ci ratio: 9.016181e-04	ci left: 8.097733e-01	ci right 8.105039e-01	k: 3588915	n:4430000
KS ci ratio: 1.032843e-01	ci left: 3.082648e-04	ci right 3.420553e-04	k: 1439	n:4430000
ZMYND8   4430000 perm   9529 sec   (465 perm/sec)   p_kst 3.248307e-04   p_cons 8.101388e-01   p_joint 3.248307e-04

Joint ci ratio: 1.032126e-01	ci left: 3.080094e-04	ci right 3.417470e-04	k: 1441	n:4440000
Cons ci ratio: 9.006209e-04	ci left: 8.097673e-01	ci right 8.104971e-01	k: 3596988	n:4440000
KS ci ratio: 1.032126e-01	ci left: 3.080094e-04	ci right 3.417470e-04	k: 1441	n:4440000
ZMYND8   4440000 perm   9570 sec   (464 perm/sec)   p_kst 3.245495e-04   p_cons 8.101324e-01   p_joint 3.245495e-04

Joint ci ratio: 1.030698e-01	ci left: 3.081929e-04	ci right 3.419011e-04	k: 1445	n:4450000
Cons ci ratio: 8.995475e-04	ci left: 8.097886e-01	ci right 8.105175e-01	k: 3605182	n:4450000
KS ci ratio: 1.030698e-01	ci left: 3.081929e-04	ci right 3.419011e-04	k: 1445	n:4450000
ZMYND8   4450000 perm   9611 sec   (463 perm/sec)   p_kst 3.247191e-04   p_cons 8.101533e-01   p_joint 3.247191e-04

Joint ci ratio: 1.029630e-01	ci left: 3.081572e-04	ci right 3.418244e-04	k: 1448	n:4460000
Cons ci ratio: 8.985637e-04	ci left: 8.097803e-01	ci right 8.105085e-01	k: 3613245	n:4460000
KS ci ratio: 1.029630e-01	ci left: 3.081572e-04	ci right 3.418244e-04	k: 1448	n:4460000
ZMYND8   4460000 perm   9651 sec   (462 perm/sec)   p_kst 3.246637e-04   p_cons 8.101446e-01   p_joint 3.246637e-04

Joint ci ratio: 1.028920e-01	ci left: 3.079037e-04	ci right 3.415187e-04	k: 1450	n:4470000
Cons ci ratio: 8.976040e-04	ci left: 8.097650e-01	ci right 8.104924e-01	k: 3621276	n:4470000
KS ci ratio: 1.028920e-01	ci left: 3.079037e-04	ci right 3.415187e-04	k: 1450	n:4470000
ZMYND8   4470000 perm   9691 sec   (461 perm/sec)   p_kst 3.243848e-04   p_cons 8.101289e-01   p_joint 3.243848e-04

Joint ci ratio: 1.026799e-01	ci left: 3.085213e-04	ci right 3.421300e-04	k: 1456	n:4480000
Cons ci ratio: 8.965888e-04	ci left: 8.097698e-01	ci right 8.104963e-01	k: 3629397	n:4480000
KS ci ratio: 1.026799e-01	ci left: 3.085213e-04	ci right 3.421300e-04	k: 1456	n:4480000
ZMYND8   4480000 perm   9732 sec   (460 perm/sec)   p_kst 3.250000e-04   p_cons 8.101333e-01   p_joint 3.250000e-04

Joint ci ratio: 1.026447e-01	ci left: 3.080512e-04	ci right 3.415965e-04	k: 1457	n:4490000
Cons ci ratio: 8.955628e-04	ci left: 8.097795e-01	ci right 8.105052e-01	k: 3637540	n:4490000
KS ci ratio: 1.026447e-01	ci left: 3.080512e-04	ci right 3.415965e-04	k: 1457	n:4490000
ZMYND8   4490000 perm   9774 sec   (459 perm/sec)   p_kst 3.244989e-04   p_cons 8.101425e-01   p_joint 3.244989e-04

Joint ci ratio: 1.025393e-01	ci left: 3.080162e-04	ci right 3.415212e-04	k: 1460	n:4500000
Cons ci ratio: 8.945229e-04	ci left: 8.097951e-01	ci right 8.105200e-01	k: 3645710	n:4500000
KS ci ratio: 1.025393e-01	ci left: 3.080162e-04	ci right 3.415212e-04	k: 1460	n:4500000
ZMYND8   4500000 perm   9815 sec   (458 perm/sec)   p_kst 3.244444e-04   p_cons 8.101578e-01   p_joint 3.244444e-04

Joint ci ratio: 1.024342e-01	ci left: 3.079813e-04	ci right 3.414461e-04	k: 1463	n:4510000
Cons ci ratio: 8.935381e-04	ci left: 8.097930e-01	ci right 8.105171e-01	k: 3653800	n:4510000
KS ci ratio: 1.024342e-01	ci left: 3.079813e-04	ci right 3.414461e-04	k: 1463	n:4510000
ZMYND8   4510000 perm   9856 sec   (458 perm/sec)   p_kst 3.243902e-04   p_cons 8.101552e-01   p_joint 3.243902e-04

Joint ci ratio: 1.023294e-01	ci left: 3.079467e-04	ci right 3.413714e-04	k: 1466	n:4520000
Cons ci ratio: 8.924994e-04	ci left: 8.098105e-01	ci right 8.105338e-01	k: 3661979	n:4520000
KS ci ratio: 1.023294e-01	ci left: 3.079467e-04	ci right 3.413714e-04	k: 1466	n:4520000
ZMYND8   4520000 perm   9897 sec   (457 perm/sec)   p_kst 3.243363e-04   p_cons 8.101723e-01   p_joint 3.243363e-04

Joint ci ratio: 1.022249e-01	ci left: 3.079122e-04	ci right 3.412970e-04	k: 1469	n:4530000
Cons ci ratio: 8.915238e-04	ci left: 8.098074e-01	ci right 8.105299e-01	k: 3670065	n:4530000
KS ci ratio: 1.022249e-01	ci left: 3.079122e-04	ci right 3.412970e-04	k: 1469	n:4530000
ZMYND8   4530000 perm   9938 sec   (456 perm/sec)   p_kst 3.242826e-04   p_cons 8.101689e-01   p_joint 3.242826e-04

Joint ci ratio: 1.021208e-01	ci left: 3.078779e-04	ci right 3.412230e-04	k: 1472	n:4540000
Cons ci ratio: 8.905291e-04	ci left: 8.098121e-01	ci right 8.105338e-01	k: 3678186	n:4540000
KS ci ratio: 1.021208e-01	ci left: 3.078779e-04	ci right 3.412230e-04	k: 1472	n:4540000
ZMYND8   4540000 perm   9980 sec   (455 perm/sec)   p_kst 3.242291e-04   p_cons 8.101731e-01   p_joint 3.242291e-04

Joint ci ratio: 1.021208e-01	ci left: 3.072012e-04	ci right 3.404730e-04	k: 1472	n:4550000
Cons ci ratio: 8.895930e-04	ci left: 8.097976e-01	ci right 8.105185e-01	k: 3686220	n:4550000
KS ci ratio: 1.021208e-01	ci left: 3.072012e-04	ci right 3.404730e-04	k: 1472	n:4550000
ZMYND8   4550000 perm   10022 sec   (454 perm/sec)   p_kst 3.235165e-04   p_cons 8.101582e-01   p_joint 3.235165e-04

Joint ci ratio: 1.020170e-01	ci left: 3.071686e-04	ci right 3.404011e-04	k: 1475	n:4560000
Cons ci ratio: 8.886212e-04	ci left: 8.097965e-01	ci right 8.105167e-01	k: 3694315	n:4560000
KS ci ratio: 1.020170e-01	ci left: 3.071686e-04	ci right 3.404011e-04	k: 1475	n:4560000
ZMYND8   4560000 perm   10063 sec   (453 perm/sec)   p_kst 3.234649e-04   p_cons 8.101568e-01   p_joint 3.234649e-04

Joint ci ratio: 1.018102e-01	ci left: 3.077760e-04	ci right 3.410026e-04	k: 1481	n:4570000
Cons ci ratio: 8.876545e-04	ci left: 8.097948e-01	ci right 8.105142e-01	k: 3702407	n:4570000
KS ci ratio: 1.018102e-01	ci left: 3.077760e-04	ci right 3.410026e-04	k: 1481	n:4570000
ZMYND8   4570000 perm   10105 sec   (452 perm/sec)   p_kst 3.240700e-04   p_cons 8.101547e-01   p_joint 3.240700e-04

Joint ci ratio: 1.017759e-01	ci left: 3.073167e-04	ci right 3.404819e-04	k: 1482	n:4580000
Cons ci ratio: 8.866437e-04	ci left: 8.098095e-01	ci right 8.105281e-01	k: 3710574	n:4580000
KS ci ratio: 1.017759e-01	ci left: 3.073167e-04	ci right 3.404819e-04	k: 1482	n:4580000
ZMYND8   4580000 perm   10147 sec   (451 perm/sec)   p_kst 3.235808e-04   p_cons 8.101690e-01   p_joint 3.235808e-04

Joint ci ratio: 1.017417e-01	ci left: 3.068595e-04	ci right 3.399635e-04	k: 1483	n:4590000
Cons ci ratio: 8.856753e-04	ci left: 8.098106e-01	ci right 8.105284e-01	k: 3718679	n:4590000
KS ci ratio: 1.017417e-01	ci left: 3.068595e-04	ci right 3.399635e-04	k: 1483	n:4590000
ZMYND8   4590000 perm   10189 sec   (451 perm/sec)   p_kst 3.230937e-04   p_cons 8.101697e-01   p_joint 3.230937e-04

Joint ci ratio: 1.015366e-01	ci left: 3.074636e-04	ci right 3.405620e-04	k: 1489	n:4600000
Cons ci ratio: 8.847094e-04	ci left: 8.098120e-01	ci right 8.105289e-01	k: 3726785	n:4600000
KS ci ratio: 1.015366e-01	ci left: 3.074636e-04	ci right 3.405620e-04	k: 1489	n:4600000
ZMYND8   4600000 perm   10231 sec   (450 perm/sec)   p_kst 3.236957e-04   p_cons 8.101707e-01   p_joint 3.236957e-04

Joint ci ratio: 1.014685e-01	ci left: 3.072195e-04	ci right 3.402681e-04	k: 1491	n:4610000
Cons ci ratio: 8.837840e-04	ci left: 8.098003e-01	ci right 8.105165e-01	k: 3734831	n:4610000
KS ci ratio: 1.014685e-01	ci left: 3.072195e-04	ci right 3.402681e-04	k: 1491	n:4610000
ZMYND8   4610000 perm   10273 sec   (449 perm/sec)   p_kst 3.234273e-04   p_cons 8.101586e-01   p_joint 3.234273e-04

Joint ci ratio: 1.014006e-01	ci left: 3.069764e-04	ci right 3.399754e-04	k: 1493	n:4620000
Cons ci ratio: 8.828094e-04	ci left: 8.098068e-01	ci right 8.105222e-01	k: 3742961	n:4620000
KS ci ratio: 1.014006e-01	ci left: 3.069764e-04	ci right 3.399754e-04	k: 1493	n:4620000
ZMYND8   4620000 perm   10315 sec   (448 perm/sec)   p_kst 3.231602e-04   p_cons 8.101647e-01   p_joint 3.231602e-04

Joint ci ratio: 1.012651e-01	ci left: 3.071555e-04	ci right 3.401270e-04	k: 1497	n:4630000
Cons ci ratio: 8.818478e-04	ci left: 8.098099e-01	ci right 8.105245e-01	k: 3751075	n:4630000
KS ci ratio: 1.012651e-01	ci left: 3.071555e-04	ci right 3.401270e-04	k: 1497	n:4630000
ZMYND8   4630000 perm   10358 sec   (447 perm/sec)   p_kst 3.233261e-04   p_cons 8.101674e-01   p_joint 3.233261e-04

Joint ci ratio: 1.011639e-01	ci left: 3.071237e-04	ci right 3.400569e-04	k: 1500	n:4640000
Cons ci ratio: 8.808888e-04	ci left: 8.098131e-01	ci right 8.105270e-01	k: 3759190	n:4640000
KS ci ratio: 1.011639e-01	ci left: 3.071237e-04	ci right 3.400569e-04	k: 1500	n:4640000
ZMYND8   4640000 perm   10400 sec   (446 perm/sec)   p_kst 3.232759e-04   p_cons 8.101703e-01   p_joint 3.232759e-04

Joint ci ratio: 1.009288e-01	ci left: 3.079305e-04	ci right 3.408689e-04	k: 1507	n:4650000
Cons ci ratio: 8.799526e-04	ci left: 8.098095e-01	ci right 8.105226e-01	k: 3767273	n:4650000
KS ci ratio: 1.009288e-01	ci left: 3.079305e-04	ci right 3.408689e-04	k: 1507	n:4650000
ZMYND8   4650000 perm   10443 sec   (445 perm/sec)   p_kst 3.240860e-04   p_cons 8.101662e-01   p_joint 3.240860e-04

Joint ci ratio: 1.009288e-01	ci left: 3.072697e-04	ci right 3.401375e-04	k: 1507	n:4660000
Cons ci ratio: 8.790145e-04	ci left: 8.098076e-01	ci right 8.105199e-01	k: 3775364	n:4660000
KS ci ratio: 1.009288e-01	ci left: 3.072697e-04	ci right 3.401375e-04	k: 1507	n:4660000
ZMYND8   4660000 perm   10485 sec   (444 perm/sec)   p_kst 3.233906e-04   p_cons 8.101639e-01   p_joint 3.233906e-04

Joint ci ratio: 1.008285e-01	ci left: 3.072380e-04	ci right 3.400677e-04	k: 1510	n:4670000
Cons ci ratio: 8.780806e-04	ci left: 8.098053e-01	ci right 8.105168e-01	k: 3783453	n:4670000
KS ci ratio: 1.008285e-01	ci left: 3.072380e-04	ci right 3.400677e-04	k: 1510	n:4670000
ZMYND8   4670000 perm   10527 sec   (444 perm/sec)   p_kst 3.233405e-04   p_cons 8.101612e-01   p_joint 3.233405e-04

Joint ci ratio: 1.007286e-01	ci left: 3.072063e-04	ci right 3.399983e-04	k: 1513	n:4680000
Cons ci ratio: 8.770686e-04	ci left: 8.098314e-01	ci right 8.105422e-01	k: 3791675	n:4680000
KS ci ratio: 1.007286e-01	ci left: 3.072063e-04	ci right 3.399983e-04	k: 1513	n:4680000
ZMYND8   4680000 perm   10569 sec   (443 perm/sec)   p_kst 3.232906e-04   p_cons 8.101870e-01   p_joint 3.232906e-04

Joint ci ratio: 1.005958e-01	ci left: 3.073827e-04	ci right 3.401477e-04	k: 1517	n:4690000
Cons ci ratio: 8.761203e-04	ci left: 8.098363e-01	ci right 8.105463e-01	k: 3799798	n:4690000
KS ci ratio: 1.005958e-01	ci left: 3.073827e-04	ci right 3.401477e-04	k: 1517	n:4690000
ZMYND8   4690000 perm   10611 sec   (442 perm/sec)   p_kst 3.234542e-04   p_cons 8.101915e-01   p_joint 3.234542e-04

Joint ci ratio: 1.003975e-01	ci left: 3.079732e-04	ci right 3.407326e-04	k: 1523	n:4700000
Cons ci ratio: 8.751810e-04	ci left: 8.098390e-01	ci right 8.105483e-01	k: 3807911	n:4700000
KS ci ratio: 1.003975e-01	ci left: 3.079732e-04	ci right 3.407326e-04	k: 1523	n:4700000
ZMYND8   4700000 perm   10654 sec   (441 perm/sec)   p_kst 3.240426e-04   p_cons 8.101938e-01   p_joint 3.240426e-04

Joint ci ratio: 1.003647e-01	ci left: 3.075263e-04	ci right 3.402268e-04	k: 1524	n:4710000
Cons ci ratio: 8.743063e-04	ci left: 8.098201e-01	ci right 8.105286e-01	k: 3815922	n:4710000
KS ci ratio: 1.003647e-01	ci left: 3.075263e-04	ci right 3.402268e-04	k: 1524	n:4710000
ZMYND8   4710000 perm   10698 sec   (440 perm/sec)   p_kst 3.235669e-04   p_cons 8.101745e-01   p_joint 3.235669e-04

Joint ci ratio: 1.002333e-01	ci left: 3.077010e-04	ci right 3.403747e-04	k: 1528	n:4720000
Cons ci ratio: 8.733831e-04	ci left: 8.098192e-01	ci right 8.105270e-01	k: 3824018	n:4720000
KS ci ratio: 1.002333e-01	ci left: 3.077010e-04	ci right 3.403747e-04	k: 1528	n:4720000
ZMYND8   4720000 perm   10741 sec   (439 perm/sec)   p_kst 3.237288e-04   p_cons 8.101733e-01   p_joint 3.237288e-04

Joint ci ratio: 1.001678e-01	ci left: 3.074627e-04	ci right 3.400885e-04	k: 1530	n:4730000
Cons ci ratio: 8.724934e-04	ci left: 8.098076e-01	ci right 8.105147e-01	k: 3832063	n:4730000
KS ci ratio: 1.001678e-01	ci left: 3.074627e-04	ci right 3.400885e-04	k: 1530	n:4730000
ZMYND8   4730000 perm   10784 sec   (439 perm/sec)   p_kst 3.234672e-04   p_cons 8.101613e-01   p_joint 3.234672e-04

Joint ci ratio: 1.001024e-01	ci left: 3.072254e-04	ci right 3.398036e-04	k: 1532	n:4740000
Cons ci ratio: 8.715843e-04	ci left: 8.098038e-01	ci right 8.105101e-01	k: 3840145	n:4740000
KS ci ratio: 1.001024e-01	ci left: 3.072254e-04	ci right 3.398036e-04	k: 1532	n:4740000
ZMYND8   4740000 perm   10827 sec   (438 perm/sec)   p_kst 3.232068e-04   p_cons 8.101572e-01   p_joint 3.232068e-04

Joint ci ratio: 1.000698e-01	ci left: 3.067839e-04	ci right 3.393040e-04	k: 1533	n:4750000
Cons ci ratio: 8.706774e-04	ci left: 8.098003e-01	ci right 8.105059e-01	k: 3848228	n:4750000
KS ci ratio: 1.000698e-01	ci left: 3.067839e-04	ci right 3.393040e-04	k: 1533	n:4750000
ZMYND8   4750000 perm   10871 sec   (437 perm/sec)   p_kst 3.227368e-04   p_cons 8.101533e-01   p_joint 3.227368e-04

Joint ci ratio: 9.990713e-02	ci left: 3.071635e-04	ci right 3.396678e-04	k: 1538	n:4760000
Cons ci ratio: 8.697930e-04	ci left: 8.097898e-01	ci right 8.104947e-01	k: 3856278	n:4760000
KS ci ratio: 9.990713e-02	ci left: 3.071635e-04	ci right 3.396678e-04	k: 1538	n:4760000
ZMYND8   4760000 perm   10913 sec   (436 perm/sec)   p_kst 3.231092e-04   p_cons 8.101424e-01   p_joint 3.231092e-04

Outputting figure to mutsig2_images.part000000000195/ZMYND8.3_3659_4760000_0.00032311_0.81014_0.00032311.png
                gene_name: ZMYND8
               theta_stop: 0.100 
                    nperm: 4760000 
                     p_ks: 0.00032 
        ci_ks_bounds_left: 0.00031 
       ci_ks_bounds_right: 0.00034 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.00032 
     ci_joint_bounds_left: 0.00031 
    ci_joint_bounds_right: 0.00034 

Current progress: 46 percent done.
ZNF10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.155970e-02	ci left: 2.795337e-01	ci right 2.973897e-01	k: 2884	n:10000
Cons ci ratio: 3.434968e-02	ci left: 5.558170e-01	ci right 5.753448e-01	k: 5656	n:10000
KS ci ratio: 8.981570e-02	ci left: 1.527663e-01	ci right 1.672324e-01	k: 1599	n:10000
ZNF10   10000 perm   2 sec   (6547 perm/sec)   p_kst 1.599000e-01   p_cons 5.656000e-01   p_joint 2.884000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF10.3_1738_10000_0.1599_0.5656_0.2884.png
                gene_name: ZNF10
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 47 percent done.
ZNF121
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.615640e-02	ci left: 1.640602e-01	ci right 1.789317e-01	k: 1714	n:10000
Cons ci ratio: 6.714328e-02	ci left: 2.455898e-01	ci right 2.627536e-01	k: 2541	n:10000
KS ci ratio: 1.425481e-01	ci left: 6.526833e-02	ci right 7.538371e-02	k: 702	n:10000
ZNF121   10000 perm   1 sec   (6854 perm/sec)   p_kst 7.020000e-02   p_cons 2.541000e-01   p_joint 1.714000e-01

Joint ci ratio: 6.626847e-02	ci left: 1.439433e-01	ci right 1.538590e-01	k: 2977	n:20000
Cons ci ratio: 4.522149e-02	ci left: 2.668838e-01	ci right 2.792823e-01	k: 5461	n:20000
KS ci ratio: 9.992253e-02	ci left: 6.786890e-02	ci right 7.505629e-02	k: 1428	n:20000
ZNF121   20000 perm   3 sec   (6023 perm/sec)   p_kst 7.140000e-02   p_cons 2.730500e-01   p_joint 1.488500e-01

Outputting figure to mutsig2_images.part000000000195/ZNF121.3_1181_20000_0.0714_0.27305_0.14885.png
                gene_name: ZNF121
               theta_stop: 0.100 
                    nperm: 20000 
                     p_ks: 0.071 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.075 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 49 percent done.
ZNF136
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.824936e-02	ci left: 5.023507e-01	ci right 5.220421e-01	k: 5122	n:10000
Cons ci ratio: 3.775496e-02	ci left: 5.088528e-01	ci right 5.285363e-01	k: 5187	n:10000
KS ci ratio: 4.797082e-02	ci left: 3.906772e-01	ci right 4.099809e-01	k: 4003	n:10000
ZNF136   10000 perm   2 sec   (5691 perm/sec)   p_kst 4.003000e-01   p_cons 5.187000e-01   p_joint 5.122000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF136.3_1639_10000_0.4003_0.5187_0.5122.png
                gene_name: ZNF136
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 51 percent done.
ZNF148
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.209987e-01	ci left: 2.712237e-02	ci right 3.395474e-02	k: 304	n:10000
Cons ci ratio: 4.002490e-01	ci left: 7.602648e-03	ci right 1.149110e-02	k: 94	n:10000
KS ci ratio: 2.624881e-02	ci left: 6.812340e-01	ci right 6.994550e-01	k: 6904	n:10000
ZNF148   10000 perm   2 sec   (5376 perm/sec)   p_kst 6.904000e-01   p_cons 9.400000e-03   p_joint 3.040000e-02

Joint ci ratio: 1.011475e-01	ci left: 6.630631e-02	ci right 7.341936e-02	k: 1396	n:20000
Cons ci ratio: 2.815335e-01	ci left: 8.248793e-03	ci right 1.099660e-02	k: 191	n:20000
KS ci ratio: 1.866554e-02	ci left: 6.815270e-01	ci right 6.944183e-01	k: 13760	n:20000
ZNF148   20000 perm   4 sec   (4842 perm/sec)   p_kst 6.880000e-01   p_cons 9.550000e-03   p_joint 6.980000e-02

Joint ci ratio: 8.023455e-02	ci left: 7.073537e-02	ci right 7.668083e-02	k: 2210	n:30000
Cons ci ratio: 2.278841e-01	ci left: 8.653395e-03	ci right 1.090973e-02	k: 292	n:30000
KS ci ratio: 1.522395e-02	ci left: 6.831913e-01	ci right 6.937055e-01	k: 20654	n:30000
ZNF148   30000 perm   6 sec   (4626 perm/sec)   p_kst 6.884667e-01   p_cons 9.733333e-03   p_joint 7.366667e-02

Joint ci ratio: 8.050980e-02	ci left: 5.369303e-02	ci right 5.822171e-02	k: 2237	n:40000
Cons ci ratio: 1.970149e-01	ci left: 8.834070e-03	ci right 1.078808e-02	k: 391	n:40000
KS ci ratio: 1.317799e-02	ci left: 6.841113e-01	ci right 6.932113e-01	k: 27547	n:40000
ZNF148   40000 perm   9 sec   (4479 perm/sec)   p_kst 6.886750e-01   p_cons 9.775000e-03   p_joint 5.592500e-02

Joint ci ratio: 6.736846e-02	ci left: 6.127947e-02	ci right 6.557138e-02	k: 3170	n:50000
Cons ci ratio: 1.742514e-01	ci left: 9.146410e-03	ci right 1.091117e-02	k: 500	n:50000
KS ci ratio: 1.178335e-02	ci left: 6.847210e-01	ci right 6.928571e-01	k: 34440	n:50000
ZNF148   50000 perm   11 sec   (4371 perm/sec)   p_kst 6.888000e-01   p_cons 1.000000e-02   p_joint 6.340000e-02

Joint ci ratio: 6.461225e-02	ci left: 5.592940e-02	ci right 5.968018e-02	k: 3467	n:60000
Cons ci ratio: 1.603129e-01	ci left: 9.075238e-03	ci right 1.067271e-02	k: 591	n:60000
KS ci ratio: 1.073580e-02	ci left: 6.859140e-01	ci right 6.933343e-01	k: 41378	n:60000
ZNF148   60000 perm   14 sec   (4276 perm/sec)   p_kst 6.896333e-01   p_cons 9.850000e-03   p_joint 5.778333e-02

Joint ci ratio: 4.405089e-02	ci left: 9.938544e-02	ci right 1.038762e-01	k: 7113	n:70000
Cons ci ratio: 1.501506e-01	ci left: 8.918411e-03	ci right 1.037981e-02	k: 674	n:70000
KS ci ratio: 9.977374e-03	ci left: 6.845529e-01	ci right 6.914315e-01	k: 48160	n:70000
ZNF148   70000 perm   17 sec   (4173 perm/sec)   p_kst 6.880000e-01   p_cons 9.628571e-03   p_joint 1.016143e-01

Joint ci ratio: 3.943954e-02	ci left: 1.077406e-01	ci right 1.120877e-01	k: 8792	n:80000
Cons ci ratio: 1.409548e-01	ci left: 8.899705e-03	ci right 1.026122e-02	k: 765	n:80000
KS ci ratio: 9.341686e-03	ci left: 6.843754e-01	ci right 6.908110e-01	k: 55008	n:80000
ZNF148   80000 perm   20 sec   (4091 perm/sec)   p_kst 6.876000e-01   p_cons 9.562500e-03   p_joint 1.099000e-01

Joint ci ratio: 3.714839e-02	ci left: 1.080510e-01	ci right 1.121519e-01	k: 9908	n:90000
Cons ci ratio: 1.334221e-01	ci left: 8.865802e-03	ci right 1.014389e-02	k: 854	n:90000
KS ci ratio: 8.816318e-03	ci left: 6.841260e-01	ci right 6.901953e-01	k: 61845	n:90000
ZNF148   90000 perm   22 sec   (4017 perm/sec)   p_kst 6.871667e-01   p_cons 9.488889e-03   p_joint 1.100889e-01

Joint ci ratio: 3.744254e-02	ci left: 9.692748e-02	ci right 1.006358e-01	k: 9877	n:100000
Cons ci ratio: 1.264411e-01	ci left: 8.917721e-03	ci right 1.013098e-02	k: 951	n:100000
KS ci ratio: 8.349442e-03	ci left: 6.850278e-01	ci right 6.907813e-01	k: 68791	n:100000
ZNF148   100000 perm   25 sec   (3946 perm/sec)   p_kst 6.879100e-01   p_cons 9.510000e-03   p_joint 9.877000e-02

Joint ci ratio: 3.363947e-02	ci left: 1.080304e-01	ci right 1.117357e-01	k: 12086	n:110000
Cons ci ratio: 1.205686e-01	ci left: 8.943989e-03	ci right 1.010027e-02	k: 1046	n:110000
KS ci ratio: 7.962588e-03	ci left: 6.850703e-01	ci right 6.905561e-01	k: 75660	n:110000
ZNF148   110000 perm   28 sec   (3871 perm/sec)   p_kst 6.878182e-01   p_cons 9.509091e-03   p_joint 1.098727e-01

Joint ci ratio: 3.394494e-02	ci left: 9.831640e-02	ci right 1.017196e-01	k: 12001	n:120000
Cons ci ratio: 1.151399e-01	ci left: 9.015537e-03	ci right 1.012502e-02	k: 1147	n:120000
KS ci ratio: 7.633245e-03	ci left: 6.846433e-01	ci right 6.898977e-01	k: 82473	n:120000
ZNF148   120000 perm   32 sec   (3807 perm/sec)   p_kst 6.872750e-01   p_cons 9.558333e-03   p_joint 1.000083e-01

Joint ci ratio: 3.330226e-02	ci left: 9.470918e-02	ci right 9.792423e-02	k: 12520	n:130000
Cons ci ratio: 1.097209e-01	ci left: 9.189301e-03	ci right 1.026351e-02	k: 1263	n:130000
KS ci ratio: 7.344912e-03	ci left: 6.840935e-01	ci right 6.891443e-01	k: 89261	n:130000
ZNF148   130000 perm   35 sec   (3744 perm/sec)   p_kst 6.866231e-01   p_cons 9.715385e-03   p_joint 9.630769e-02

Joint ci ratio: 3.173548e-02	ci left: 9.670977e-02	ci right 9.983546e-02	k: 13757	n:140000
Cons ci ratio: 1.052324e-01	ci left: 9.297547e-03	ci right 1.033719e-02	k: 1373	n:140000
KS ci ratio: 7.078116e-03	ci left: 6.841627e-01	ci right 6.890296e-01	k: 96124	n:140000
ZNF148   140000 perm   38 sec   (3682 perm/sec)   p_kst 6.866000e-01   p_cons 9.807143e-03   p_joint 9.826429e-02

Joint ci ratio: 1.861025e-02	ci left: 2.261379e-01	ci right 2.303926e-01	k: 34239	n:150000
Cons ci ratio: 8.008886e-02	ci left: 1.509002e-02	ci right 1.635547e-02	k: 2357	n:150000
KS ci ratio: 6.834405e-03	ci left: 6.844794e-01	ci right 6.891801e-01	k: 103025	n:150000
ZNF148   150000 perm   41 sec   (3623 perm/sec)   p_kst 6.868333e-01   p_cons 1.571333e-02   p_joint 2.282600e-01

Outputting figure to mutsig2_images.part000000000195/ZNF148.3_2409_150000_0.68683_0.015713_0.22826.png
                gene_name: ZNF148
               theta_stop: 0.080 
                    nperm: 150000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.016 
      ci_cons_bounds_left: 0.015 
     ci_cons_bounds_right: 0.016 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.23 

Current progress: 53 percent done.
ZNF165
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.248048e-02	ci left: 2.180307e-01	ci right 2.345290e-01	k: 2262	n:10000
Cons ci ratio: 7.424233e-02	ci left: 2.098419e-01	ci right 2.261227e-01	k: 2179	n:10000
KS ci ratio: 4.922212e-02	ci left: 3.784330e-01	ci right 3.976323e-01	k: 3880	n:10000
ZNF165   10000 perm   2 sec   (5773 perm/sec)   p_kst 3.880000e-01   p_cons 2.179000e-01   p_joint 2.262000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF165.3_1470_10000_0.388_0.2179_0.2262.png
                gene_name: ZNF165
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 54 percent done.
ZNF169
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.230103e-02	ci left: 3.501865e-01	ci right 3.690954e-01	k: 3596	n:10000
Cons ci ratio: 1.037572e-01	ci left: 1.183824e-01	ci right 1.314370e-01	k: 1248	n:10000
KS ci ratio: 4.353171e-02	ci left: 4.379204e-01	ci right 4.575101e-01	k: 4477	n:10000
ZNF169   10000 perm   2 sec   (5985 perm/sec)   p_kst 4.477000e-01   p_cons 1.248000e-01   p_joint 3.596000e-01

Joint ci ratio: 4.107497e-02	ci left: 3.064268e-01	ci right 3.193277e-01	k: 6257	n:20000
Cons ci ratio: 7.283658e-02	ci left: 1.218734e-01	ci right 1.311355e-01	k: 2529	n:20000
KS ci ratio: 3.076553e-02	ci left: 4.410910e-01	ci right 4.549241e-01	k: 8960	n:20000
ZNF169   20000 perm   4 sec   (5301 perm/sec)   p_kst 4.480000e-01   p_cons 1.264500e-01   p_joint 3.128500e-01

Outputting figure to mutsig2_images.part000000000195/ZNF169.3_1828_20000_0.448_0.12645_0.31285.png
                gene_name: ZNF169
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 56 percent done.
ZNF17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.869758e-01	ci left: 3.815245e-02	ci right 4.611708e-02	k: 420	n:10000
Cons ci ratio: 6.485020e-02	ci left: 2.588428e-01	ci right 2.762928e-01	k: 2675	n:10000
KS ci ratio: 3.093700e-01	ci left: 1.335536e-02	ci right 1.833248e-02	k: 157	n:10000
ZNF17   10000 perm   2 sec   (5960 perm/sec)   p_kst 1.570000e-02   p_cons 2.675000e-01   p_joint 4.200000e-02

Joint ci ratio: 1.474078e-01	ci left: 3.162770e-02	ci right 3.670891e-02	k: 682	n:20000
Cons ci ratio: 4.350829e-02	ci left: 2.823761e-01	ci right 2.949854e-01	k: 5773	n:20000
KS ci ratio: 2.297185e-01	ci left: 1.270049e-02	ci right 1.604289e-02	k: 286	n:20000
ZNF17   20000 perm   4 sec   (5243 perm/sec)   p_kst 1.430000e-02   p_cons 2.886500e-01   p_joint 3.410000e-02

Joint ci ratio: 1.129476e-01	ci left: 3.641581e-02	ci right 4.080746e-02	k: 1157	n:30000
Cons ci ratio: 3.543526e-02	ci left: 2.845708e-01	ci right 2.948700e-01	k: 8691	n:30000
KS ci ratio: 2.030836e-01	ci left: 1.102017e-02	ci right 1.354227e-02	k: 367	n:30000
ZNF17   30000 perm   6 sec   (4981 perm/sec)   p_kst 1.223333e-02   p_cons 2.897000e-01   p_joint 3.856667e-02

Joint ci ratio: 1.275295e-01	ci left: 2.160162e-02	ci right 2.456818e-02	k: 922	n:40000
Cons ci ratio: 3.059553e-02	ci left: 2.865017e-01	ci right 2.954286e-01	k: 11638	n:40000
KS ci ratio: 1.752745e-01	ci left: 1.126678e-02	ci right 1.345486e-02	k: 493	n:40000
ZNF17   40000 perm   8 sec   (4787 perm/sec)   p_kst 1.232500e-02   p_cons 2.909500e-01   p_joint 2.305000e-02

Joint ci ratio: 1.035167e-01	ci left: 2.643495e-02	ci right 2.934021e-02	k: 1393	n:50000
Cons ci ratio: 2.846444e-02	ci left: 2.710694e-01	ci right 2.789167e-01	k: 13749	n:50000
KS ci ratio: 1.577435e-01	ci left: 1.123695e-02	ci right 1.318030e-02	k: 609	n:50000
ZNF17   50000 perm   11 sec   (4650 perm/sec)   p_kst 1.218000e-02   p_cons 2.749800e-01   p_joint 2.786000e-02

Joint ci ratio: 8.854305e-02	ci left: 3.023094e-02	ci right 3.304794e-02	k: 1897	n:60000
Cons ci ratio: 2.597677e-02	ci left: 2.715294e-01	ci right 2.786923e-01	k: 16506	n:60000
KS ci ratio: 1.464496e-01	ci left: 1.093524e-02	ci right 1.267913e-02	k: 707	n:60000
ZNF17   60000 perm   13 sec   (4532 perm/sec)   p_kst 1.178333e-02   p_cons 2.751000e-01   p_joint 3.161667e-02

Joint ci ratio: 8.632539e-02	ci left: 2.737767e-02	ci right 2.986161e-02	k: 2002	n:70000
Cons ci ratio: 2.323442e-02	ci left: 2.857148e-01	ci right 2.924455e-01	k: 20235	n:70000
KS ci ratio: 1.370202e-01	ci left: 1.076472e-02	ci right 1.236186e-02	k: 808	n:70000
ZNF17   70000 perm   16 sec   (4431 perm/sec)   p_kst 1.154286e-02   p_cons 2.890714e-01   p_joint 2.860000e-02

Joint ci ratio: 7.315253e-02	ci left: 3.338102e-02	ci right 3.592787e-02	k: 2771	n:80000
Cons ci ratio: 2.170401e-02	ci left: 2.864957e-01	ci right 2.927945e-01	k: 23171	n:80000
KS ci ratio: 1.284925e-01	ci left: 1.076058e-02	ci right 1.225016e-02	k: 919	n:80000
ZNF17   80000 perm   18 sec   (4339 perm/sec)   p_kst 1.148750e-02   p_cons 2.896375e-01   p_joint 3.463750e-02

Joint ci ratio: 7.369700e-02	ci left: 2.935342e-02	ci right 3.161031e-02	k: 2742	n:90000
Cons ci ratio: 2.044811e-02	ci left: 2.869703e-01	ci right 2.929099e-01	k: 26094	n:90000
KS ci ratio: 1.224065e-01	ci left: 1.057658e-02	ci right 1.196630e-02	k: 1013	n:90000
ZNF17   90000 perm   21 sec   (4235 perm/sec)   p_kst 1.125556e-02   p_cons 2.899333e-01   p_joint 3.046667e-02

Joint ci ratio: 7.588616e-02	ci left: 2.500282e-02	ci right 2.698480e-02	k: 2598	n:100000
Cons ci ratio: 1.940417e-02	ci left: 2.870092e-01	ci right 2.926429e-01	k: 28982	n:100000
KS ci ratio: 1.151301e-01	ci left: 1.079980e-02	ci right 1.212877e-02	k: 1145	n:100000
ZNF17   100000 perm   24 sec   (4157 perm/sec)   p_kst 1.145000e-02   p_cons 2.898200e-01   p_joint 2.598000e-02

Joint ci ratio: 6.904001e-02	ci left: 2.748883e-02	ci right 2.946341e-02	k: 3131	n:110000
Cons ci ratio: 1.850087e-02	ci left: 2.871473e-01	ci right 2.925184e-01	k: 31881	n:110000
KS ci ratio: 1.097987e-01	ci left: 1.082522e-02	ci right 1.209164e-02	k: 1259	n:110000
ZNF17   110000 perm   27 sec   (4084 perm/sec)   p_kst 1.144545e-02   p_cons 2.898273e-01   p_joint 2.846364e-02

Joint ci ratio: 7.943194e-02	ci left: 1.910094e-02	ci right 2.068905e-02	k: 2386	n:120000
Cons ci ratio: 1.772413e-02	ci left: 2.870097e-01	ci right 2.921505e-01	k: 34749	n:120000
KS ci ratio: 1.068497e-01	ci left: 1.049866e-02	ci right 1.169181e-02	k: 1330	n:120000
ZNF17   120000 perm   30 sec   (4001 perm/sec)   p_kst 1.108333e-02   p_cons 2.895750e-01   p_joint 1.988333e-02

Joint ci ratio: 7.458214e-02	ci left: 2.003107e-02	ci right 2.159041e-02	k: 2704	n:130000
Cons ci ratio: 1.701570e-02	ci left: 2.874268e-01	ci right 2.923672e-01	k: 37686	n:130000
KS ci ratio: 1.024754e-01	ci left: 1.056004e-02	ci right 1.170807e-02	k: 1446	n:130000
ZNF17   130000 perm   33 sec   (3933 perm/sec)   p_kst 1.112308e-02   p_cons 2.898923e-01   p_joint 2.080000e-02

Joint ci ratio: 7.271592e-02	ci left: 1.959572e-02	ci right 2.108138e-02	k: 2846	n:140000
Cons ci ratio: 1.641183e-02	ci left: 2.871394e-01	ci right 2.918979e-01	k: 40532	n:140000
KS ci ratio: 9.885394e-02	ci left: 1.055776e-02	ci right 1.166263e-02	k: 1554	n:140000
ZNF17   140000 perm   36 sec   (3865 perm/sec)   p_kst 1.110000e-02   p_cons 2.895143e-01   p_joint 2.032857e-02

Outputting figure to mutsig2_images.part000000000195/ZNF17.3_2001_140000_0.0111_0.28951_0.020329.png
                gene_name: ZNF17
               theta_stop: 0.099 
                    nperm: 140000 
                     p_ks: 0.011 
        ci_ks_bounds_left: 0.011 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.020 
     ci_joint_bounds_left: 0.020 
    ci_joint_bounds_right: 0.021 

Current progress: 58 percent done.
ZNF189
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.190602e-02	ci left: 3.536657e-01	ci right 3.726141e-01	k: 3631	n:10000
Cons ci ratio: 5.264337e-02	ci left: 3.472048e-01	ci right 3.660788e-01	k: 3566	n:10000
KS ci ratio: 6.129090e-02	ci left: 2.813167e-01	ci right 2.992056e-01	k: 2902	n:10000
ZNF189   10000 perm   2 sec   (5807 perm/sec)   p_kst 2.902000e-01   p_cons 3.566000e-01   p_joint 3.631000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF189.3_1893_10000_0.2902_0.3566_0.3631.png
                gene_name: ZNF189
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 59 percent done.
ZNF202
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.097653e-02	ci left: 3.620179e-01	ci right 3.810570e-01	k: 3715	n:10000
KS ci ratio: 2.227578e-02	ci left: 7.473571e-01	ci right 7.642936e-01	k: 7559	n:10000
ZNF202   10000 perm   2 sec   (5530 perm/sec)   p_kst 7.559000e-01   p_cons 3.715000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000195/ZNF202.3_1971_10000_0.7559_0.3715_1.png
                gene_name: ZNF202
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 61 percent done.
ZNF205
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.956251e-01	ci left: 3.481398e-02	ci right 4.245779e-02	k: 385	n:10000
Cons ci ratio: 9.055796e-02	ci left: 1.506072e-01	ci right 1.649928e-01	k: 1577	n:10000
KS ci ratio: 3.842359e-01	ci left: 8.324320e-03	ci right 1.236857e-02	k: 102	n:10000
ZNF205   10000 perm   2 sec   (5998 perm/sec)   p_kst 1.020000e-02   p_cons 1.577000e-01   p_joint 3.850000e-02

Joint ci ratio: 1.806525e-01	ci left: 2.091926e-02	ci right 2.512099e-02	k: 459	n:20000
Cons ci ratio: 6.617712e-02	ci left: 1.442885e-01	ci right 1.542137e-01	k: 2984	n:20000
KS ci ratio: 2.564170e-01	ci left: 1.006870e-02	ci right 1.307582e-02	k: 230	n:20000
ZNF205   20000 perm   4 sec   (5291 perm/sec)   p_kst 1.150000e-02   p_cons 1.492000e-01   p_joint 2.295000e-02

Joint ci ratio: 1.045433e-01	ci left: 4.242166e-02	ci right 4.713367e-02	k: 1342	n:30000
Cons ci ratio: 5.223236e-02	ci left: 1.539222e-01	ci right 1.622108e-01	k: 4741	n:30000
KS ci ratio: 2.116954e-01	ci left: 1.010318e-02	ci right 1.252618e-02	k: 338	n:30000
ZNF205   30000 perm   6 sec   (5066 perm/sec)   p_kst 1.126667e-02   p_cons 1.580333e-01   p_joint 4.473333e-02

Joint ci ratio: 9.957312e-02	ci left: 3.543973e-02	ci right 3.917783e-02	k: 1491	n:40000
Cons ci ratio: 4.515693e-02	ci left: 1.549334e-01	ci right 1.621162e-01	k: 6340	n:40000
KS ci ratio: 1.827220e-01	ci left: 1.033500e-02	ci right 1.243684e-02	k: 454	n:40000
ZNF205   40000 perm   8 sec   (4892 perm/sec)   p_kst 1.135000e-02   p_cons 1.585000e-01   p_joint 3.727500e-02

Joint ci ratio: 1.087227e-01	ci left: 2.396064e-02	ci right 2.673484e-02	k: 1266	n:50000
Cons ci ratio: 4.048758e-02	ci left: 1.546740e-01	ci right 1.610857e-01	k: 7893	n:50000
KS ci ratio: 1.641266e-01	ci left: 1.035361e-02	ci right 1.222378e-02	k: 563	n:50000
ZNF205   50000 perm   11 sec   (4756 perm/sec)   p_kst 1.126000e-02   p_cons 1.578600e-01   p_joint 2.532000e-02

Joint ci ratio: 1.023448e-01	ci left: 2.264385e-02	ci right 2.510250e-02	k: 1431	n:60000
Cons ci ratio: 3.685101e-02	ci left: 1.557349e-01	ci right 1.615982e-01	k: 9519	n:60000
KS ci ratio: 1.482614e-01	ci left: 1.066224e-02	ci right 1.238550e-02	k: 690	n:60000
ZNF205   60000 perm   13 sec   (4642 perm/sec)   p_kst 1.150000e-02   p_cons 1.586500e-01   p_joint 2.385000e-02

Joint ci ratio: 1.060960e-01	ci left: 1.811276e-02	ci right 2.015594e-02	k: 1338	n:70000
Cons ci ratio: 3.415521e-02	ci left: 1.556597e-01	ci right 1.610829e-01	k: 11085	n:70000
KS ci ratio: 1.371919e-01	ci left: 1.073712e-02	ci right 1.233233e-02	k: 806	n:70000
ZNF205   70000 perm   15 sec   (4534 perm/sec)   p_kst 1.151429e-02   p_cons 1.583571e-01   p_joint 1.911429e-02

Joint ci ratio: 9.283763e-02	ci left: 2.078699e-02	ci right 2.282290e-02	k: 1743	n:80000
Cons ci ratio: 3.192940e-02	ci left: 1.560003e-01	ci right 1.610745e-01	k: 12682	n:80000
KS ci ratio: 1.279310e-01	ci left: 1.085741e-02	ci right 1.235333e-02	k: 927	n:80000
ZNF205   80000 perm   18 sec   (4425 perm/sec)   p_kst 1.158750e-02   p_cons 1.585250e-01   p_joint 2.178750e-02

Joint ci ratio: 7.981775e-02	ci left: 2.505724e-02	ci right 2.715124e-02	k: 2348	n:90000
Cons ci ratio: 3.005501e-02	ci left: 1.565722e-01	ci right 1.613609e-01	k: 14306	n:90000
KS ci ratio: 1.202075e-01	ci left: 1.097535e-02	ci right 1.238972e-02	k: 1050	n:90000
ZNF205   90000 perm   21 sec   (4337 perm/sec)   p_kst 1.166667e-02   p_cons 1.589556e-01   p_joint 2.608889e-02

Joint ci ratio: 8.170547e-02	ci left: 2.157989e-02	ci right 2.342794e-02	k: 2249	n:100000
Cons ci ratio: 2.856899e-02	ci left: 1.561718e-01	ci right 1.607080e-01	k: 15843	n:100000
KS ci ratio: 1.142757e-01	ci left: 1.096497e-02	ci right 1.230358e-02	k: 1162	n:100000
ZNF205   100000 perm   24 sec   (4255 perm/sec)   p_kst 1.162000e-02   p_cons 1.584300e-01   p_joint 2.249000e-02

Joint ci ratio: 7.912175e-02	ci left: 2.096294e-02	ci right 2.269876e-02	k: 2400	n:110000
Cons ci ratio: 2.730783e-02	ci left: 1.556140e-01	ci right 1.599313e-01	k: 17354	n:110000
KS ci ratio: 1.094478e-01	ci left: 1.089598e-02	ci right 1.216634e-02	k: 1267	n:110000
ZNF205   110000 perm   26 sec   (4175 perm/sec)   p_kst 1.151818e-02   p_cons 1.577636e-01   p_joint 2.181818e-02

Joint ci ratio: 8.319074e-02	ci left: 1.741036e-02	ci right 1.892972e-02	k: 2179	n:120000
Cons ci ratio: 2.614176e-02	ci left: 1.557415e-01	ci right 1.598750e-01	k: 18936	n:120000
KS ci ratio: 1.044175e-01	ci left: 1.100183e-02	ci right 1.222195e-02	k: 1392	n:120000
ZNF205   120000 perm   29 sec   (4099 perm/sec)   p_kst 1.160000e-02   p_cons 1.578000e-01   p_joint 1.815833e-02

Joint ci ratio: 8.872759e-02	ci left: 1.413554e-02	ci right 1.545546e-02	k: 1922	n:130000
Cons ci ratio: 2.507491e-02	ci left: 1.562583e-01	ci right 1.602339e-01	k: 20571	n:130000
KS ci ratio: 1.006959e-01	ci left: 1.094249e-02	ci right 1.211022e-02	k: 1497	n:130000
ZNF205   130000 perm   32 sec   (4027 perm/sec)   p_kst 1.151538e-02   p_cons 1.582385e-01   p_joint 1.478462e-02

Joint ci ratio: 8.621967e-02	ci left: 1.392227e-02	ci right 1.518367e-02	k: 2036	n:140000
Cons ci ratio: 2.419228e-02	ci left: 1.560076e-01	ci right 1.598351e-01	k: 22108	n:140000
KS ci ratio: 9.637731e-02	ci left: 1.111539e-02	ci right 1.224783e-02	k: 1634	n:140000
ZNF205   140000 perm   35 sec   (3956 perm/sec)   p_kst 1.167143e-02   p_cons 1.579143e-01   p_joint 1.454286e-02

Outputting figure to mutsig2_images.part000000000195/ZNF205.3_1689_140000_0.011671_0.15791_0.014543.png
                gene_name: ZNF205
               theta_stop: 0.096 
                    nperm: 140000 
                     p_ks: 0.012 
        ci_ks_bounds_left: 0.011 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.015 
     ci_joint_bounds_left: 0.014 
    ci_joint_bounds_right: 0.015 

Current progress: 63 percent done.
ZNF217
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.427232e-02	ci left: 8.765385e-01	ci right 8.892375e-01	k: 8830	n:10000
Cons ci ratio: 2.768326e-02	ci left: 6.578667e-01	ci right 6.764359e-01	k: 6672	n:10000
KS ci ratio: 3.355961e-02	ci left: 5.672458e-01	ci right 5.867093e-01	k: 5770	n:10000
ZNF217   10000 perm   2 sec   (5173 perm/sec)   p_kst 5.770000e-01   p_cons 6.672000e-01   p_joint 8.830000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF217.3_3163_10000_0.577_0.6672_0.883.png
                gene_name: ZNF217
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 64 percent done.
ZNF25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.214301e-02	ci left: 7.495823e-01	ci right 7.664671e-01	k: 7581	n:10000
KS ci ratio: 2.660544e-02	ci left: 6.753898e-01	ci right 6.937026e-01	k: 6846	n:10000
ZNF25   10000 perm   2 sec   (5897 perm/sec)   p_kst 6.846000e-01   p_cons 7.581000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000195/ZNF25.3_1391_10000_0.6846_0.7581_1.png
                gene_name: ZNF25
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 66 percent done.
ZNF250
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.577252e-02	ci left: 8.537584e-01	ci right 8.674308e-01	k: 8607	n:10000
KS ci ratio: 1.769192e-02	ci left: 8.233055e-01	ci right 8.381013e-01	k: 8308	n:10000
ZNF250   10000 perm   2 sec   (5795 perm/sec)   p_kst 8.308000e-01   p_cons 8.607000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000195/ZNF250.3_1703_10000_0.8308_0.8607_1.png
                gene_name: ZNF250
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
ZNF12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.612611e-02	ci left: 6.832497e-01	ci right 7.014381e-01	k: 6924	n:10000
Cons ci ratio: 5.254030e-02	ci left: 3.480992e-01	ci right 3.669838e-01	k: 3575	n:10000
KS ci ratio: 5.230335e-03	ci left: 9.798420e-01	ci right 9.850715e-01	k: 9826	n:10000
ZNF12   10000 perm   2 sec   (6132 perm/sec)   p_kst 9.826000e-01   p_cons 3.575000e-01   p_joint 6.924000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF12.2_2110_10000_0.9826_0.3575_0.6924.png
                gene_name: ZNF12
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 69 percent done.
ZNF131
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.943955e-02	ci left: 2.940013e-01	ci right 3.121135e-01	k: 3030	n:10000
Cons ci ratio: 5.288510e-02	ci left: 3.451178e-01	ci right 3.639670e-01	k: 3545	n:10000
KS ci ratio: 6.561992e-02	ci left: 2.542921e-01	ci right 2.716462e-01	k: 2629	n:10000
ZNF131   10000 perm   2 sec   (6027 perm/sec)   p_kst 2.629000e-01   p_cons 3.545000e-01   p_joint 3.030000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF131.2_1798_10000_0.2629_0.3545_0.303.png
                gene_name: ZNF131
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 71 percent done.
ZNF133
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.379177e-02	ci left: 2.652752e-01	ci right 2.828566e-01	k: 2740	n:10000
Cons ci ratio: 1.031447e-01	ci left: 1.196532e-01	ci right 1.327654e-01	k: 1261	n:10000
KS ci ratio: 1.244153e-01	ci left: 8.465526e-02	ci right 9.598471e-02	k: 902	n:10000
ZNF133   10000 perm   2 sec   (5877 perm/sec)   p_kst 9.020000e-02   p_cons 1.261000e-01   p_joint 2.740000e-01

Joint ci ratio: 1.212030e-01	ci left: 4.668018e-02	ci right 5.275159e-02	k: 993	n:20000
Cons ci ratio: 7.205614e-02	ci left: 1.242359e-01	ci right 1.335722e-01	k: 2577	n:20000
KS ci ratio: 8.763043e-02	ci left: 8.695066e-02	ci right 9.496872e-02	k: 1818	n:20000
ZNF133   20000 perm   4 sec   (5210 perm/sec)   p_kst 9.090000e-02   p_cons 1.288500e-01   p_joint 4.965000e-02

Joint ci ratio: 7.481667e-02	ci left: 8.068826e-02	ci right 8.699261e-02	k: 2514	n:30000
Cons ci ratio: 6.185494e-02	ci left: 1.144027e-01	ci right 1.217381e-01	k: 3541	n:30000
KS ci ratio: 7.158650e-02	ci left: 8.760454e-02	ci right 9.414161e-02	k: 2725	n:30000
ZNF133   30000 perm   6 sec   (4959 perm/sec)   p_kst 9.083333e-02   p_cons 1.180333e-01   p_joint 8.380000e-02

Outputting figure to mutsig2_images.part000000000195/ZNF133.2_1974_30000_0.090833_0.11803_0.0838.png
                gene_name: ZNF133
               theta_stop: 0.075 
                    nperm: 30000 
                     p_ks: 0.091 
        ci_ks_bounds_left: 0.088 
       ci_ks_bounds_right: 0.094 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.084 
     ci_joint_bounds_left: 0.081 
    ci_joint_bounds_right: 0.087 

Current progress: 73 percent done.
ZNF142
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.266216e-02	ci left: 4.478988e-01	ci right 4.675258e-01	k: 4577	n:10000
Cons ci ratio: 8.440949e-02	ci left: 1.698592e-01	ci right 1.849292e-01	k: 1773	n:10000
KS ci ratio: 1.719903e-02	ci left: 8.312409e-01	ci right 8.457613e-01	k: 8386	n:10000
ZNF142   10000 perm   2 sec   (4334 perm/sec)   p_kst 8.386000e-01   p_cons 1.773000e-01   p_joint 4.577000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF142.2_5092_10000_0.8386_0.1773_0.4577.png
                gene_name: ZNF142
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 75 percent done.
ZNF143
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.365600e-03	ci left: 9.788782e-01	ci right 9.842360e-01	k: 9817	n:10000
Cons ci ratio: 1.495306e-01	ci left: 5.947341e-02	ci right 6.918228e-02	k: 642	n:10000
KS ci ratio: 3.741616e-02	ci left: 5.133552e-01	ci right 5.330313e-01	k: 5232	n:10000
ZNF143   10000 perm   2 sec   (5891 perm/sec)   p_kst 5.232000e-01   p_cons 6.420000e-02   p_joint 9.817000e-01

Joint ci ratio: 3.682703e-03	ci left: 9.807962e-01	ci right 9.844616e-01	k: 19654	n:20000
Cons ci ratio: 1.076732e-01	ci left: 5.879414e-02	ci right 6.553384e-02	k: 1242	n:20000
KS ci ratio: 2.660794e-02	ci left: 5.134487e-01	ci right 5.273454e-01	k: 10408	n:20000
ZNF143   20000 perm   4 sec   (5193 perm/sec)   p_kst 5.204000e-01   p_cons 6.210000e-02   p_joint 9.827000e-01

Joint ci ratio: 2.984918e-03	ci left: 9.814034e-01	ci right 9.843687e-01	k: 29488	n:30000
Cons ci ratio: 8.604835e-02	ci left: 6.190927e-02	ci right 6.750872e-02	k: 1940	n:30000
KS ci ratio: 2.172000e-02	ci left: 5.148618e-01	ci right 5.262009e-01	k: 15616	n:30000
ZNF143   30000 perm   6 sec   (4949 perm/sec)   p_kst 5.205333e-01   p_cons 6.466667e-02   p_joint 9.829333e-01

Outputting figure to mutsig2_images.part000000000195/ZNF143.2_1977_30000_0.52053_0.064667_0.98293.png
                gene_name: ZNF143
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.065 
      ci_cons_bounds_left: 0.062 
     ci_cons_bounds_right: 0.068 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 76 percent done.
ZNF146
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.567292e-03	ci left: 9.842574e-01	ci right 9.888526e-01	k: 9867	n:10000
Cons ci ratio: 4.277403e-02	ci left: 4.466014e-01	ci right 4.662240e-01	k: 4564	n:10000
KS ci ratio: 3.914713e-02	ci left: 4.907512e-01	ci right 5.104484e-01	k: 5006	n:10000
ZNF146   10000 perm   2 sec   (6532 perm/sec)   p_kst 5.006000e-01   p_cons 4.564000e-01   p_joint 9.867000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF146.2_883_10000_0.5006_0.4564_0.9867.png
                gene_name: ZNF146
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 78 percent done.
ZNF167
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.323372e-02	ci left: 4.413126e-01	ci right 4.609159e-01	k: 4511	n:10000
Cons ci ratio: 5.190602e-02	ci left: 3.536657e-01	ci right 3.726141e-01	k: 3631	n:10000
KS ci ratio: 7.539331e-02	ci left: 2.047140e-01	ci right 2.208536e-01	k: 2127	n:10000
ZNF167   10000 perm   2 sec   (5999 perm/sec)   p_kst 2.127000e-01   p_cons 3.631000e-01   p_joint 4.511000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF167.2_2309_10000_0.2127_0.3631_0.4511.png
                gene_name: ZNF167
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 80 percent done.
ZNF174
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.130935e-02	ci left: 7.635473e-01	ci right 7.800941e-01	k: 7719	n:10000
Cons ci ratio: 1.076856e-01	ci left: 1.106648e-01	ci right 1.233592e-01	k: 1169	n:10000
KS ci ratio: 6.158604e-03	ci left: 9.728080e-01	ci right 9.789104e-01	k: 9760	n:10000
ZNF174   10000 perm   2 sec   (6268 perm/sec)   p_kst 9.760000e-01   p_cons 1.169000e-01   p_joint 7.719000e-01

Joint ci ratio: 2.725204e-02	ci left: 5.014957e-01	ci right 5.154019e-01	k: 10169	n:20000
Cons ci ratio: 8.206427e-02	ci left: 9.818223e-02	ci right 1.066338e-01	k: 2047	n:20000
KS ci ratio: 4.577113e-03	ci left: 9.711790e-01	ci right 9.756820e-01	k: 19470	n:20000
ZNF174   20000 perm   4 sec   (5564 perm/sec)   p_kst 9.735000e-01   p_cons 1.023500e-01   p_joint 5.084500e-01

Outputting figure to mutsig2_images.part000000000195/ZNF174.2_1320_20000_0.9735_0.10235_0.50845.png
                gene_name: ZNF174
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.098 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 81 percent done.
ZNF175
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.684847e-02	ci left: 8.368400e-01	ci right 8.511590e-01	k: 8441	n:10000
KS ci ratio: 2.906652e-02	ci left: 6.357313e-01	ci right 6.545841e-01	k: 6452	n:10000
ZNF175   10000 perm   2 sec   (5642 perm/sec)   p_kst 6.452000e-01   p_cons 8.441000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000195/ZNF175.2_2152_10000_0.6452_0.8441_1.png
                gene_name: ZNF175
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
ZNF180
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.808495e-02	ci left: 1.579697e-01	ci right 1.726258e-01	k: 1652	n:10000
Cons ci ratio: 1.371664e-01	ci left: 7.029921e-02	ci right 8.074967e-02	k: 754	n:10000
KS ci ratio: 2.104908e-02	ci left: 7.679013e-01	ci right 7.843376e-01	k: 7762	n:10000
ZNF180   10000 perm   2 sec   (5927 perm/sec)   p_kst 7.762000e-01   p_cons 7.540000e-02   p_joint 1.652000e-01

Joint ci ratio: 3.324449e-02	ci left: 4.032220e-01	ci right 4.169041e-01	k: 8201	n:20000
Cons ci ratio: 9.603360e-02	ci left: 7.319530e-02	ci right 8.062826e-02	k: 1537	n:20000
KS ci ratio: 1.491386e-02	ci left: 7.696525e-01	ci right 7.812674e-01	k: 15510	n:20000
ZNF180   20000 perm   4 sec   (5354 perm/sec)   p_kst 7.755000e-01   p_cons 7.685000e-02   p_joint 4.100500e-01

Outputting figure to mutsig2_images.part000000000195/ZNF180.2_2099_20000_0.7755_0.07685_0.41005.png
                gene_name: ZNF180
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.077 
      ci_cons_bounds_left: 0.073 
     ci_cons_bounds_right: 0.081 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 85 percent done.
ZNF185
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.230595e-02	ci left: 7.468514e-01	ci right 7.637996e-01	k: 7554	n:10000
Cons ci ratio: 3.871119e-02	ci left: 4.963503e-01	ci right 5.160461e-01	k: 5062	n:10000
KS ci ratio: 2.386340e-02	ci left: 7.207785e-01	ci right 7.382876e-01	k: 7296	n:10000
ZNF185   10000 perm   2 sec   (5747 perm/sec)   p_kst 7.296000e-01   p_cons 5.062000e-01   p_joint 7.554000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF185.2_2402_10000_0.7296_0.5062_0.7554.png
                gene_name: ZNF185
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.76 

Current progress: 86 percent done.
ZNF19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.304147e-02	ci left: 8.943634e-01	ci right 9.062022e-01	k: 9004	n:10000
KS ci ratio: 5.561642e-02	ci left: 3.225714e-01	ci right 3.411266e-01	k: 3318	n:10000
ZNF19   10000 perm   2 sec   (6290 perm/sec)   p_kst 3.318000e-01   p_cons 9.004000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000195/ZNF19.2_1393_10000_0.3318_0.9004_1.png
                gene_name: ZNF19
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
ZNF207
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.453543e-02	ci left: 7.095727e-01	ci right 7.272999e-01	k: 7185	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
ZNF207   10000 perm   2 sec   (6174 perm/sec)   p_kst 1   p_cons 7.185000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000195/ZNF207.2_1533_10000_1_0.7185_1.png
                gene_name: ZNF207
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
ZNF214
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.290300e-02	ci left: 8.963130e-01	ci right 9.080515e-01	k: 9023	n:10000
Cons ci ratio: 1.409920e-02	ci left: 8.790966e-01	ci right 8.916780e-01	k: 8855	n:10000
KS ci ratio: 2.898406e-02	ci left: 6.370387e-01	ci right 6.558759e-01	k: 6465	n:10000
ZNF214   10000 perm   2 sec   (5959 perm/sec)   p_kst 6.465000e-01   p_cons 8.855000e-01   p_joint 9.023000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF214.2_1829_10000_0.6465_0.8855_0.9023.png
                gene_name: ZNF214
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 92 percent done.
ZNF226
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.652540e-02	ci left: 6.766995e-01	ci right 6.949921e-01	k: 6859	n:10000
Cons ci ratio: 2.763342e-02	ci left: 6.586720e-01	ci right 6.772301e-01	k: 6680	n:10000
KS ci ratio: 4.766254e-02	ci left: 3.937641e-01	ci right 4.130922e-01	k: 4034	n:10000
ZNF226   10000 perm   2 sec   (5625 perm/sec)   p_kst 4.034000e-01   p_cons 6.680000e-01   p_joint 6.859000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF226.2_2482_10000_0.4034_0.668_0.6859.png
                gene_name: ZNF226
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.69 

Current progress: 93 percent done.
ZNF232
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.062734e-02	ci left: 6.113069e-01	ci right 6.304227e-01	k: 6209	n:10000
Cons ci ratio: 7.104141e-02	ci left: 2.250393e-01	ci right 2.417163e-01	k: 2333	n:10000
KS ci ratio: 4.161190e-02	ci left: 4.602776e-01	ci right 4.799398e-01	k: 4701	n:10000
ZNF232   10000 perm   2 sec   (6303 perm/sec)   p_kst 4.701000e-01   p_cons 2.333000e-01   p_joint 6.209000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF232.2_1351_10000_0.4701_0.2333_0.6209.png
                gene_name: ZNF232
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 95 percent done.
ZNF248
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.400106e-02	ci left: 3.356792e-01	ci right 3.544111e-01	k: 3450	n:10000
KS ci ratio: 5.297765e-02	ci left: 3.443228e-01	ci right 3.631625e-01	k: 3537	n:10000
ZNF248   10000 perm   2 sec   (6278 perm/sec)   p_kst 3.537000e-01   p_cons 3.450000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000195/ZNF248.2_1756_10000_0.3537_0.345_1.png
                gene_name: ZNF248
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
ZNF253
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.262554e-03	ci left: 9.719600e-01	ci right 9.781590e-01	k: 9752	n:10000
Cons ci ratio: 3.825701e-02	ci left: 5.022507e-01	ci right 5.219422e-01	k: 5121	n:10000
KS ci ratio: 3.206323e-02	ci left: 5.894169e-01	ci right 6.087254e-01	k: 5991	n:10000
ZNF253   10000 perm   2 sec   (6237 perm/sec)   p_kst 5.991000e-01   p_cons 5.121000e-01   p_joint 9.752000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF253.2_1516_10000_0.5991_0.5121_0.9752.png
                gene_name: ZNF253
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 98 percent done.
ZNF256
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.187220e-01	ci left: 1.252543e-02	ci right 1.736316e-02	k: 148	n:10000
Cons ci ratio: 3.571839e-01	ci left: 9.776646e-03	ci right 1.411465e-02	k: 118	n:10000
KS ci ratio: 4.418895e-02	ci left: 4.305389e-01	ci right 4.500959e-01	k: 4403	n:10000
ZNF256   10000 perm   2 sec   (5998 perm/sec)   p_kst 4.403000e-01   p_cons 1.180000e-02   p_joint 1.480000e-02

Joint ci ratio: 1.649854e-01	ci left: 2.518148e-02	ci right 2.975729e-02	k: 548	n:20000
Cons ci ratio: 2.499297e-01	ci left: 1.063101e-02	ci right 1.371326e-02	k: 242	n:20000
KS ci ratio: 3.113833e-02	ci left: 4.351510e-01	ci right 4.489658e-01	k: 8841	n:20000
ZNF256   20000 perm   4 sec   (5258 perm/sec)   p_kst 4.420500e-01   p_cons 1.210000e-02   p_joint 2.740000e-02

Joint ci ratio: 1.876765e-01	ci left: 1.298706e-02	ci right 1.570819e-02	k: 429	n:30000
Cons ci ratio: 1.998109e-01	ci left: 1.140021e-02	ci right 1.396212e-02	k: 379	n:30000
KS ci ratio: 2.527189e-02	ci left: 4.393986e-01	ci right 4.506787e-01	k: 13351	n:30000
ZNF256   30000 perm   6 sec   (5009 perm/sec)   p_kst 4.450333e-01   p_cons 1.263333e-02   p_joint 1.430000e-02

Joint ci ratio: 1.711140e-01	ci left: 1.184107e-02	ci right 1.408047e-02	k: 517	n:40000
Cons ci ratio: 1.728118e-01	ci left: 1.160171e-02	ci right 1.381988e-02	k: 507	n:40000
KS ci ratio: 2.186022e-02	ci left: 4.407457e-01	ci right 4.505121e-01	k: 17825	n:40000
ZNF256   40000 perm   8 sec   (4834 perm/sec)   p_kst 4.456250e-01   p_cons 1.267500e-02   p_joint 1.292500e-02

Joint ci ratio: 1.441215e-01	ci left: 1.352833e-02	ci right 1.564858e-02	k: 728	n:50000
Cons ci ratio: 1.550634e-01	ci left: 1.164070e-02	ci right 1.361649e-02	k: 630	n:50000
KS ci ratio: 1.955907e-02	ci left: 4.410968e-01	ci right 4.498295e-01	k: 22273	n:50000
ZNF256   50000 perm   11 sec   (4705 perm/sec)   p_kst 4.454600e-01   p_cons 1.260000e-02   p_joint 1.456000e-02

Joint ci ratio: 1.464496e-01	ci left: 1.093524e-02	ci right 1.267913e-02	k: 707	n:60000
Cons ci ratio: 1.414774e-01	ci left: 1.173889e-02	ci right 1.354204e-02	k: 757	n:60000
KS ci ratio: 1.782408e-02	ci left: 4.423334e-01	ci right 4.503051e-01	k: 26779	n:60000
ZNF256   60000 perm   13 sec   (4587 perm/sec)   p_kst 4.463167e-01   p_cons 1.261667e-02   p_joint 1.178333e-02

Joint ci ratio: 1.313090e-01	ci left: 1.174535e-02	ci right 1.340970e-02	k: 879	n:70000
Cons ci ratio: 1.303375e-01	ci left: 1.192506e-02	ci right 1.360140e-02	k: 892	n:70000
KS ci ratio: 1.648917e-02	ci left: 4.430123e-01	ci right 4.503922e-01	k: 31269	n:70000
ZNF256   70000 perm   16 sec   (4472 perm/sec)   p_kst 4.467000e-01   p_cons 1.274286e-02   p_joint 1.255714e-02

Joint ci ratio: 6.649074e-02	ci left: 4.025136e-02	ci right 4.303201e-02	k: 3330	n:80000
Cons ci ratio: 1.144574e-01	ci left: 1.362230e-02	ci right 1.528818e-02	k: 1155	n:80000
KS ci ratio: 1.542893e-02	ci left: 4.431008e-01	ci right 4.500030e-01	k: 35724	n:80000
ZNF256   80000 perm   18 sec   (4380 perm/sec)   p_kst 4.465500e-01   p_cons 1.443750e-02   p_joint 4.162500e-02

Joint ci ratio: 8.871417e-02	ci left: 2.029053e-02	ci right 2.218495e-02	k: 1910	n:90000
Cons ci ratio: 1.077645e-01	ci left: 1.370751e-02	ci right 1.527956e-02	k: 1303	n:90000
KS ci ratio: 1.453856e-02	ci left: 4.435703e-01	ci right 4.500775e-01	k: 40214	n:90000
ZNF256   90000 perm   21 sec   (4270 perm/sec)   p_kst 4.468222e-01   p_cons 1.447778e-02   p_joint 2.122222e-02

Joint ci ratio: 5.865820e-02	ci left: 4.149462e-02	ci right 4.401199e-02	k: 4274	n:100000
Cons ci ratio: 1.022305e-01	ci left: 1.374871e-02	ci right 1.523965e-02	k: 1448	n:100000
KS ci ratio: 1.380458e-02	ci left: 4.433055e-01	ci right 4.494776e-01	k: 44639	n:100000
ZNF256   100000 perm   24 sec   (4191 perm/sec)   p_kst 4.463900e-01   p_cons 1.448000e-02   p_joint 4.274000e-02

Joint ci ratio: 5.609373e-02	ci left: 4.131542e-02	ci right 4.370877e-02	k: 4675	n:110000
Cons ci ratio: 9.784424e-02	ci left: 1.367765e-02	ci right 1.509358e-02	k: 1581	n:110000
KS ci ratio: 1.318299e-02	ci left: 4.426688e-01	ci right 4.485523e-01	k: 49017	n:110000
ZNF256   110000 perm   27 sec   (4117 perm/sec)   p_kst 4.456091e-01   p_cons 1.437273e-02   p_joint 4.250000e-02

Outputting figure to mutsig2_images.part000000000195/ZNF256.2_1896_110000_0.44561_0.014373_0.0425.png
                gene_name: ZNF256
               theta_stop: 0.098 
                    nperm: 110000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.014 
      ci_cons_bounds_left: 0.014 
     ci_cons_bounds_right: 0.015 
                  p_joint: 0.043 
     ci_joint_bounds_left: 0.041 
    ci_joint_bounds_right: 0.044 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000195
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 195 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1653>
Subject: Job 8004713: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1653>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000196> was used as the working directory.
Started at Sun Nov 11 15:26:20 2012
Results reported at Sun Nov 11 15:38:41 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000196.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000196.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 196  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000196.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    795.14 sec.
    Max Memory :      4739 MB
    Max Swap   :      7132 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
196
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 196
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 196: processing genes 17643 - 17732
Calculating significance of each gene.
Using projection method.
17643	ZNF257	4.234837e-03
17644	ZNF259	5.964341e-01
17645	ZNF260	1.137630e-01
17646	ZNF263	7.821762e-01
17647	ZNF264	7.677645e-01
17648	ZNF266	1.759754e-01
17649	ZNF267	3.141568e-02
In gene ZNF268 the following bins exceed PROBCAP:
    LUSC-34-5241-TP	categ 6	N = 429     n = 1	mu =   1.00e-07
17650	ZNF268	4.412357e-03
17651	ZNF273	8.078077e-01
17652	ZNF274	1.852124e-01
17653	ZNF275	1
17654	ZNF276	7.351761e-01
17655	ZNF277	1
17656	ZNF28	8.129254e-01
17657	ZNF280A	1.805475e-01
17658	ZNF280B	4.240670e-01
17659	ZNF280C	7.717732e-01
17660	ZNF280D	9.322365e-01
17661	ZNF281	1
17662	ZNF282	3.736118e-01
17663	ZNF283	4.640704e-01
17664	ZNF284	6.593125e-01
17665	ZNF285	4.285655e-01
17666	ZNF286A	1.879057e-01
17667	ZNF286B	1
17668	ZNF287	1
17669	ZNF292	9.997725e-01
17670	ZNF295	8.824292e-01
17671	ZNF296	4.431436e-01
17672	ZNF3	8.544617e-02
17673	ZNF30	5.837998e-01
17674	ZNF300	1.601369e-01
17675	ZNF302	7.505276e-01
17676	ZNF304	1.266955e-01
17677	ZNF311	2.577742e-01
17678	ZNF317	5.280928e-01
17679	ZNF318	9.391816e-01
17680	ZNF319	7.304706e-01
17681	ZNF32	6.019396e-01
17682	ZNF320	6.079496e-03
17683	ZNF321	1
17684	ZNF322A	1
17685	ZNF322B	1
17686	ZNF323	8.885516e-03
17687	ZNF324	1
17688	ZNF324B	1.305815e-01
17689	ZNF326	5.938360e-01
17690	ZNF329	1
17691	ZNF330	5.679377e-01
17692	ZNF331	1.220575e-01
17693	ZNF333	8.073808e-01
17694	ZNF334	9.533306e-01
17695	ZNF335	9.550050e-01
17696	ZNF337	4.300298e-01
17697	ZNF33A	2.225377e-02
17698	ZNF33B	3.441844e-02
17699	ZNF34	6.591780e-01
17700	ZNF341	5.635535e-01
17701	ZNF343	9.104928e-01
17702	ZNF345	8.264710e-01
17703	ZNF346	6.047003e-01
17704	ZNF347	1
17705	ZNF35	1
17706	ZNF350	8.394556e-01
17707	ZNF354A	1
17708	ZNF354B	8.402339e-01
17709	ZNF354C	9.069096e-01
17710	ZNF358	7.604170e-01
17711	ZNF362	7.738687e-01
17712	ZNF365	1
17713	ZNF366	1
17714	ZNF367	4.803403e-01
17715	ZNF37A	5.217699e-02
17716	ZNF382	4.971557e-01
17717	ZNF383	2.823589e-01
17718	ZNF384	6.804776e-01
17719	ZNF385A	5.729504e-01
17720	ZNF385B	8.159371e-01
17721	ZNF385D	7.208863e-01
17722	ZNF391	1.905075e-01
17723	ZNF394	7.921107e-01
17724	ZNF395	7.945222e-01
17725	ZNF396	5.165840e-01
17726	ZNF397	4.457013e-01
17727	ZNF397OS	1
17728	ZNF398	4.003680e-01
17729	ZNF404	9.060865e-01
17730	ZNF407	5.084514e-01
17731	ZNF408	6.088446e-01
17732	ZNF41	3.558364e-01
Done

Running MutSig 2:
Scatter job 196: processing genes 17643 - 17732
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ZNF33A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.627059e-03	ci left: 9.688927e-01	ci right 9.754284e-01	k: 9723	n:10000
KS ci ratio: 1.885682e-02	ci left: 8.043033e-01	ci right 8.197145e-01	k: 8121	n:10000
ZNF33A   10000 perm   2 sec   (4560 perm/sec)   p_kst 8.121000e-01   p_cons 9.723000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000196/ZNF33A.12_2452_10000_0.8121_0.9723_1.png
                gene_name: ZNF33A
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 2 percent done.
ZNF257
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.023176e-02	ci left: 3.688810e-01	ci right 3.879899e-01	k: 3784	n:10000
Cons ci ratio: 6.811321e-02	ci left: 2.402520e-01	ci right 2.572946e-01	k: 2487	n:10000
KS ci ratio: 3.174386e-02	ci left: 5.942350e-01	ci right 6.135045e-01	k: 6039	n:10000
ZNF257   10000 perm   2 sec   (5528 perm/sec)   p_kst 6.039000e-01   p_cons 2.487000e-01   p_joint 3.784000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF257.9_1708_10000_0.6039_0.2487_0.3784.png
                gene_name: ZNF257
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 4 percent done.
ZNF407
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.982851e-02	ci left: 3.726615e-01	ci right 3.918072e-01	k: 3822	n:10000
Cons ci ratio: 2.795168e-02	ci left: 6.535385e-01	ci right 6.721666e-01	k: 6629	n:10000
KS ci ratio: 7.361654e-02	ci left: 2.127026e-01	ci right 2.290604e-01	k: 2208	n:10000
ZNF407   10000 perm   2 sec   (4101 perm/sec)   p_kst 2.208000e-01   p_cons 6.629000e-01   p_joint 3.822000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF407.9_6909_10000_0.2208_0.6629_0.3822.png
                gene_name: ZNF407
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 5 percent done.
ZNF292
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.689963e-02	ci left: 8.360254e-01	ci right 8.503741e-01	k: 8433	n:10000
Cons ci ratio: 7.837355e-02	ci left: 1.921984e-01	ci right 2.079767e-01	k: 2000	n:10000
KS ci ratio: 9.759959e-03	ci left: 9.369275e-01	ci right 9.462132e-01	k: 9417	n:10000
ZNF292   10000 perm   3 sec   (3886 perm/sec)   p_kst 9.417000e-01   p_cons 2.000000e-01   p_joint 8.433000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF292.8_8204_10000_0.9417_0.2_0.8433.png
                gene_name: ZNF292
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 7 percent done.
ZNF267
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.308428e-02	ci left: 7.338101e-01	ci right 7.510485e-01	k: 7425	n:10000
Cons ci ratio: 4.595323e-02	ci left: 4.113971e-01	ci right 4.308489e-01	k: 4211	n:10000
KS ci ratio: 1.220386e-02	ci left: 9.059684e-01	ci right 9.171905e-01	k: 9117	n:10000
ZNF267   10000 perm   2 sec   (5155 perm/sec)   p_kst 9.117000e-01   p_cons 4.211000e-01   p_joint 7.425000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF267.7_2248_10000_0.9117_0.4211_0.7425.png
                gene_name: ZNF267
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 9 percent done.
ZNF320
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.094976e-02	ci left: 4.682672e-01	ci right 4.879456e-01	k: 4781	n:10000
Cons ci ratio: 3.994587e-02	ci left: 4.806559e-01	ci right 5.003496e-01	k: 4905	n:10000
KS ci ratio: 4.663840e-02	ci left: 4.042228e-01	ci right 4.236274e-01	k: 4139	n:10000
ZNF320   10000 perm   2 sec   (5928 perm/sec)   p_kst 4.139000e-01   p_cons 4.905000e-01   p_joint 4.781000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF320.7_1542_10000_0.4139_0.4905_0.4781.png
                gene_name: ZNF320
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 11 percent done.
ZNF323
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.381445e-02	ci left: 4.347281e-01	ci right 4.543042e-01	k: 4445	n:10000
Cons ci ratio: 5.109680e-02	ci left: 3.609240e-01	ci right 3.799515e-01	k: 3704	n:10000
KS ci ratio: 5.641595e-02	ci left: 3.163183e-01	ci right 3.347835e-01	k: 3255	n:10000
ZNF323   10000 perm   2 sec   (5787 perm/sec)   p_kst 3.255000e-01   p_cons 3.704000e-01   p_joint 4.445000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF323.7_1233_10000_0.3255_0.3704_0.4445.png
                gene_name: ZNF323
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 12 percent done.
ZNF33B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.510363e-02	ci left: 5.450946e-01	ci right 5.646734e-01	k: 5549	n:10000
Cons ci ratio: 5.063989e-02	ci left: 3.651011e-01	ci right 3.841720e-01	k: 3746	n:10000
KS ci ratio: 3.818054e-02	ci left: 5.032509e-01	ci right 5.229414e-01	k: 5131	n:10000
ZNF33B   10000 perm   2 sec   (5154 perm/sec)   p_kst 5.131000e-01   p_cons 3.746000e-01   p_joint 5.549000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF33B.7_2353_10000_0.5131_0.3746_0.5549.png
                gene_name: ZNF33B
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.56 

Current progress: 14 percent done.
ZNF300
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.277403e-02	ci left: 4.466014e-01	ci right 4.662240e-01	k: 4564	n:10000
Cons ci ratio: 5.936928e-02	ci left: 2.944970e-01	ci right 3.126176e-01	k: 3035	n:10000
KS ci ratio: 4.161190e-02	ci left: 4.602776e-01	ci right 4.799398e-01	k: 4701	n:10000
ZNF300   10000 perm   2 sec   (6145 perm/sec)   p_kst 4.701000e-01   p_cons 3.035000e-01   p_joint 4.564000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF300.6_1883_10000_0.4701_0.3035_0.4564.png
                gene_name: ZNF300
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 16 percent done.
ZNF318
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.517934e-02	ci left: 6.988779e-01	ci right 7.168009e-01	k: 7079	n:10000
Cons ci ratio: 2.345253e-02	ci left: 7.276467e-01	ci right 7.450155e-01	k: 7364	n:10000
KS ci ratio: 3.315575e-02	ci left: 5.731628e-01	ci right 5.925889e-01	k: 5829	n:10000
ZNF318   10000 perm   2 sec   (4351 perm/sec)   p_kst 5.829000e-01   p_cons 7.364000e-01   p_joint 7.079000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF318.6_6880_10000_0.5829_0.7364_0.7079.png
                gene_name: ZNF318
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 18 percent done.
ZNF274
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.372364e-02	ci left: 2.122093e-01	ci right 2.285539e-01	k: 2203	n:10000
Cons ci ratio: 5.459159e-02	ci left: 3.308125e-01	ci right 3.494807e-01	k: 3401	n:10000
KS ci ratio: 7.512432e-02	ci left: 2.058972e-01	ci right 2.220697e-01	k: 2139	n:10000
ZNF274   10000 perm   2 sec   (6147 perm/sec)   p_kst 2.139000e-01   p_cons 3.401000e-01   p_joint 2.203000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF274.5_1989_10000_0.2139_0.3401_0.2203.png
                gene_name: ZNF274
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 19 percent done.
ZNF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.659627e-02	ci left: 3.149289e-01	ci right 3.333736e-01	k: 3241	n:10000
Cons ci ratio: 8.189489e-02	ci left: 1.787111e-01	ci right 1.940720e-01	k: 1863	n:10000
KS ci ratio: 4.371700e-02	ci left: 4.358254e-01	ci right 4.554063e-01	k: 4456	n:10000
ZNF3   10000 perm   2 sec   (5502 perm/sec)   p_kst 4.456000e-01   p_cons 1.863000e-01   p_joint 3.241000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF3.5_1486_10000_0.4456_0.1863_0.3241.png
                gene_name: ZNF3
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 21 percent done.
ZNF304
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.625609e-02	ci left: 4.082083e-01	ci right 4.276396e-01	k: 4179	n:10000
Cons ci ratio: 5.337388e-02	ci left: 3.409444e-01	ci right 3.597428e-01	k: 3503	n:10000
KS ci ratio: 4.251639e-02	ci left: 4.495956e-01	ci right 4.692281e-01	k: 4594	n:10000
ZNF304   10000 perm   2 sec   (5699 perm/sec)   p_kst 4.594000e-01   p_cons 3.503000e-01   p_joint 4.179000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF304.5_1992_10000_0.4594_0.3503_0.4179.png
                gene_name: ZNF304
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 23 percent done.
ZNF324B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.883211e-02	ci left: 8.047094e-01	ci right 8.201081e-01	k: 8125	n:10000
KS ci ratio: 1.209756e-02	ci left: 9.074079e-01	ci right 9.185501e-01	k: 9131	n:10000
ZNF324B   10000 perm   2 sec   (5862 perm/sec)   p_kst 9.131000e-01   p_cons 8.125000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000196/ZNF324B.5_1647_10000_0.9131_0.8125_1.png
                gene_name: ZNF324B
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 25 percent done.
ZNF37A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.792668e-02	ci left: 6.539410e-01	ci right 6.725638e-01	k: 6633	n:10000
Cons ci ratio: 5.484792e-02	ci left: 3.287271e-01	ci right 3.473673e-01	k: 3380	n:10000
KS ci ratio: 5.986213e-03	ci left: 9.741879e-01	ci right 9.801296e-01	k: 9773	n:10000
ZNF37A   10000 perm   2 sec   (6102 perm/sec)   p_kst 9.773000e-01   p_cons 3.380000e-01   p_joint 6.633000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF37A.5_1702_10000_0.9773_0.338_0.6633.png
                gene_name: ZNF37A
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 26 percent done.
ZNF266
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.307477e-02	ci left: 1.744810e-01	ci right 1.897046e-01	k: 1820	n:10000
Cons ci ratio: 1.381978e-02	ci left: 8.831915e-01	ci right 8.955806e-01	k: 8895	n:10000
KS ci ratio: 1.185194e-01	ci left: 9.272705e-02	ci right 1.045080e-01	k: 985	n:10000
ZNF266   10000 perm   2 sec   (6042 perm/sec)   p_kst 9.850000e-02   p_cons 8.895000e-01   p_joint 1.820000e-01

Joint ci ratio: 5.372893e-02	ci left: 2.045211e-01	ci right 2.158633e-01	k: 4203	n:20000
Cons ci ratio: 9.827902e-03	ci left: 8.839037e-01	ci right 8.926830e-01	k: 17767	n:20000
KS ci ratio: 8.590112e-02	ci left: 9.023491e-02	ci right 9.838348e-02	k: 1885	n:20000
ZNF266   20000 perm   4 sec   (5392 perm/sec)   p_kst 9.425000e-02   p_cons 8.883500e-01   p_joint 2.101500e-01

Outputting figure to mutsig2_images.part000000000196/ZNF266.4_1666_20000_0.09425_0.88835_0.21015.png
                gene_name: ZNF266
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.094 
        ci_ks_bounds_left: 0.090 
       ci_ks_bounds_right: 0.098 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 28 percent done.
ZNF28
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.052749e-02	ci left: 7.766130e-01	ci right 7.928209e-01	k: 7848	n:10000
KS ci ratio: 1.520918e-02	ci left: 8.624338e-01	ci right 8.757504e-01	k: 8692	n:10000
ZNF28   10000 perm   2 sec   (5640 perm/sec)   p_kst 8.692000e-01   p_cons 7.848000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000196/ZNF28.4_2002_10000_0.8692_0.7848_1.png
                gene_name: ZNF28
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 30 percent done.
ZNF280A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.568265e-01	ci left: 5.417192e-02	ci right 6.348715e-02	k: 587	n:10000
Cons ci ratio: 5.964782e-01	ci left: 3.028617e-03	ci right 5.672985e-03	k: 42	n:10000
KS ci ratio: 4.266216e-02	ci left: 4.478988e-01	ci right 4.675258e-01	k: 4577	n:10000
ZNF280A   10000 perm   2 sec   (5738 perm/sec)   p_kst 4.577000e-01   p_cons 4.200000e-03   p_joint 5.870000e-02

Joint ci ratio: 1.760084e-01	ci left: 2.206683e-02	ci right 2.637302e-02	k: 483	n:20000
Cons ci ratio: 4.267974e-01	ci left: 3.306767e-03	ci right 5.141989e-03	k: 83	n:20000
KS ci ratio: 3.014189e-02	ci left: 4.512263e-01	ci right 4.650859e-01	k: 9163	n:20000
ZNF280A   20000 perm   4 sec   (5132 perm/sec)   p_kst 4.581500e-01   p_cons 4.150000e-03   p_joint 2.415000e-02

Joint ci ratio: 1.275258e-01	ci left: 2.858305e-02	ci right 3.250857e-02	k: 915	n:30000
Cons ci ratio: 3.512923e-01	ci left: 3.408625e-03	ci right 4.889942e-03	k: 123	n:30000
KS ci ratio: 2.479814e-02	ci left: 4.487536e-01	ci right 4.600552e-01	k: 13632	n:30000
ZNF280A   30000 perm   6 sec   (4913 perm/sec)   p_kst 4.544000e-01   p_cons 4.100000e-03   p_joint 3.050000e-02

Joint ci ratio: 1.304528e-01	ci left: 2.063321e-02	ci right 2.353675e-02	k: 882	n:40000
Cons ci ratio: 3.000070e-01	ci left: 3.613074e-03	ci right 4.910520e-03	k: 169	n:40000
KS ci ratio: 2.143178e-02	ci left: 4.505355e-01	ci right 4.603210e-01	k: 18217	n:40000
ZNF280A   40000 perm   8 sec   (4768 perm/sec)   p_kst 4.554250e-01   p_cons 4.225000e-03   p_joint 2.205000e-02

Joint ci ratio: 9.271143e-02	ci left: 3.291733e-02	ci right 3.613700e-02	k: 1725	n:50000
Cons ci ratio: 2.319454e-01	ci left: 5.021268e-03	ci right 6.357106e-03	k: 283	n:50000
KS ci ratio: 1.920666e-02	ci left: 4.500884e-01	ci right 4.588369e-01	k: 22723	n:50000
ZNF280A   50000 perm   11 sec   (4653 perm/sec)   p_kst 4.544600e-01   p_cons 5.660000e-03   p_joint 3.450000e-02

Joint ci ratio: 1.383676e-01	ci left: 1.228596e-02	ci right 1.412824e-02	k: 791	n:60000
Cons ci ratio: 2.280564e-01	ci left: 4.341274e-03	ci right 5.474098e-03	k: 293	n:60000
KS ci ratio: 1.752482e-02	ci left: 4.507096e-01	ci right 4.586948e-01	k: 27282	n:60000
ZNF280A   60000 perm   13 sec   (4551 perm/sec)   p_kst 4.547000e-01   p_cons 4.883333e-03   p_joint 1.318333e-02

Joint ci ratio: 1.122333e-01	ci left: 1.616640e-02	ci right 1.810249e-02	k: 1198	n:70000
Cons ci ratio: 2.087074e-01	ci left: 4.490952e-03	ci right 5.550718e-03	k: 350	n:70000
KS ci ratio: 1.625250e-02	ci left: 4.501638e-01	ci right 4.575543e-01	k: 31770	n:70000
ZNF280A   70000 perm   16 sec   (4457 perm/sec)   p_kst 4.538571e-01   p_cons 5.000000e-03   p_joint 1.711429e-02

Joint ci ratio: 1.192592e-01	ci left: 1.252975e-02	ci right 1.413083e-02	k: 1065	n:80000
Cons ci ratio: 1.947754e-01	ci left: 4.546792e-03	ci right 5.539624e-03	k: 402	n:80000
KS ci ratio: 1.520117e-02	ci left: 4.504580e-01	ci right 4.573704e-01	k: 36313	n:80000
ZNF280A   80000 perm   18 sec   (4370 perm/sec)   p_kst 4.539125e-01   p_cons 5.025000e-03   p_joint 1.331250e-02

Joint ci ratio: 1.148024e-01	ci left: 1.205418e-02	ci right 1.353302e-02	k: 1150	n:90000
Cons ci ratio: 1.872776e-01	ci left: 4.390694e-03	ci right 5.308334e-03	k: 435	n:90000
KS ci ratio: 1.432224e-02	ci left: 4.509875e-01	ci right 4.575043e-01	k: 40882	n:90000
ZNF280A   90000 perm   21 sec   (4290 perm/sec)   p_kst 4.542444e-01   p_cons 4.833333e-03   p_joint 1.277778e-02

Joint ci ratio: 1.127648e-01	ci left: 1.126627e-02	ci right 1.262226e-02	k: 1193	n:100000
Cons ci ratio: 1.783054e-01	ci left: 4.381041e-03	ci right 5.248065e-03	k: 480	n:100000
KS ci ratio: 1.358303e-02	ci left: 4.513103e-01	ci right 4.574923e-01	k: 45440	n:100000
ZNF280A   100000 perm   24 sec   (4213 perm/sec)   p_kst 4.544000e-01   p_cons 4.800000e-03   p_joint 1.193000e-02

Joint ci ratio: 9.333725e-02	ci left: 1.504467e-02	ci right 1.652647e-02	k: 1735	n:110000
Cons ci ratio: 1.700237e-01	ci left: 4.400117e-03	ci right 5.226325e-03	k: 528	n:110000
KS ci ratio: 1.295212e-02	ci left: 4.514088e-01	ci right 4.573027e-01	k: 49979	n:110000
ZNF280A   110000 perm   27 sec   (4142 perm/sec)   p_kst 4.543545e-01   p_cons 4.800000e-03   p_joint 1.577273e-02

Joint ci ratio: 1.026429e-01	ci left: 1.139158e-02	ci right 1.263217e-02	k: 1440	n:120000
Cons ci ratio: 1.648196e-01	ci left: 4.304885e-03	ci right 5.086014e-03	k: 562	n:120000
KS ci ratio: 1.244198e-02	ci left: 4.498891e-01	ci right 4.555299e-01	k: 54325	n:120000
ZNF280A   120000 perm   29 sec   (4072 perm/sec)   p_kst 4.527083e-01   p_cons 4.683333e-03   p_joint 1.200000e-02

Joint ci ratio: 9.839575e-02	ci left: 1.146770e-02	ci right 1.266191e-02	k: 1567	n:130000
Cons ci ratio: 1.586042e-01	ci left: 4.305889e-03	ci right 5.054931e-03	k: 607	n:130000
KS ci ratio: 1.195352e-02	ci left: 4.500145e-01	ci right 4.554338e-01	k: 58854	n:130000
ZNF280A   130000 perm   32 sec   (4007 perm/sec)   p_kst 4.527231e-01   p_cons 4.669231e-03   p_joint 1.205385e-02

Joint ci ratio: 8.854205e-02	ci left: 1.319542e-02	ci right 1.442484e-02	k: 1932	n:140000
Cons ci ratio: 1.519940e-01	ci left: 4.369065e-03	ci right 5.094539e-03	k: 661	n:140000
KS ci ratio: 1.151046e-02	ci left: 4.504684e-01	ci right 4.556906e-01	k: 63431	n:140000
ZNF280A   140000 perm   36 sec   (3942 perm/sec)   p_kst 4.530786e-01   p_cons 4.721429e-03   p_joint 1.380000e-02

Joint ci ratio: 8.562515e-02	ci left: 1.318960e-02	ci right 1.437597e-02	k: 2066	n:150000
Cons ci ratio: 1.466622e-01	ci left: 4.392261e-03	ci right 5.093760e-03	k: 710	n:150000
KS ci ratio: 1.111191e-02	ci left: 4.509249e-01	ci right 4.559702e-01	k: 68017	n:150000
ZNF280A   150000 perm   39 sec   (3882 perm/sec)   p_kst 4.534467e-01   p_cons 4.733333e-03   p_joint 1.377333e-02

Joint ci ratio: 8.231762e-02	ci left: 1.339939e-02	ci right 1.455582e-02	k: 2235	n:160000
Cons ci ratio: 1.401963e-01	ci left: 4.521494e-03	ci right 5.209137e-03	k: 777	n:160000
KS ci ratio: 1.075547e-02	ci left: 4.511708e-01	ci right 4.560558e-01	k: 72578	n:160000
ZNF280A   160000 perm   42 sec   (3824 perm/sec)   p_kst 4.536125e-01   p_cons 4.856250e-03   p_joint 1.396875e-02

Joint ci ratio: 8.040649e-02	ci left: 1.323351e-02	ci right 1.434787e-02	k: 2343	n:170000
Cons ci ratio: 1.358145e-01	ci left: 4.545170e-03	ci right 5.213063e-03	k: 828	n:170000
KS ci ratio: 1.043077e-02	ci left: 4.514136e-01	ci right 4.561527e-01	k: 77143	n:170000
ZNF280A   170000 perm   45 sec   (3766 perm/sec)   p_kst 4.537824e-01   p_cons 4.870588e-03   p_joint 1.378235e-02

Joint ci ratio: 7.944767e-02	ci left: 1.281398e-02	ci right 1.387955e-02	k: 2401	n:180000
Cons ci ratio: 1.314447e-01	ci left: 4.593380e-03	ci right 5.244944e-03	k: 884	n:180000
KS ci ratio: 1.013880e-02	ci left: 4.513870e-01	ci right 4.559923e-01	k: 81664	n:180000
ZNF280A   180000 perm   49 sec   (3710 perm/sec)   p_kst 4.536889e-01   p_cons 4.911111e-03   p_joint 1.333889e-02

Joint ci ratio: 7.341330e-02	ci left: 1.424115e-02	ci right 1.533162e-02	k: 2808	n:190000
Cons ci ratio: 1.278816e-01	ci left: 4.606248e-03	ci right 5.240581e-03	k: 934	n:190000
KS ci ratio: 9.862828e-03	ci left: 4.517278e-01	ci right 4.562104e-01	k: 86254	n:190000
ZNF280A   190000 perm   52 sec   (3657 perm/sec)   p_kst 4.539684e-01   p_cons 4.915789e-03   p_joint 1.477895e-02

Joint ci ratio: 7.179936e-02	ci left: 1.415745e-02	ci right 1.521668e-02	k: 2936	n:200000
Cons ci ratio: 1.246569e-01	ci left: 4.613198e-03	ci right 5.231286e-03	k: 983	n:200000
KS ci ratio: 9.612779e-03	ci left: 4.518012e-01	ci right 4.561702e-01	k: 90797	n:200000
ZNF280A   200000 perm   55 sec   (3606 perm/sec)   p_kst 4.539850e-01   p_cons 4.915000e-03   p_joint 1.468000e-02

Joint ci ratio: 6.976940e-02	ci left: 1.429255e-02	ci right 1.533043e-02	k: 3109	n:210000
Cons ci ratio: 1.217831e-01	ci left: 4.610432e-03	ci right 5.212882e-03	k: 1030	n:210000
KS ci ratio: 9.375067e-03	ci left: 4.521735e-01	ci right 4.564373e-01	k: 95404	n:210000
ZNF280A   210000 perm   59 sec   (3557 perm/sec)   p_kst 4.543048e-01   p_cons 4.904762e-03   p_joint 1.480476e-02

Joint ci ratio: 6.608663e-02	ci left: 1.522043e-02	ci right 1.626511e-02	k: 3462	n:220000
Cons ci ratio: 1.184932e-01	ci left: 4.656588e-03	ci right 5.247480e-03	k: 1088	n:220000
KS ci ratio: 9.157512e-03	ci left: 4.523313e-01	ci right 4.564971e-01	k: 99971	n:220000
ZNF280A   220000 perm   63 sec   (3511 perm/sec)   p_kst 4.544136e-01   p_cons 4.945455e-03   p_joint 1.573636e-02

Joint ci ratio: 6.471040e-02	ci left: 1.519590e-02	ci right 1.621636e-02	k: 3611	n:230000
Cons ci ratio: 1.160168e-01	ci left: 4.652481e-03	ci right 5.229668e-03	k: 1135	n:230000
KS ci ratio: 8.955137e-03	ci left: 4.524374e-01	ci right 4.565116e-01	k: 104529	n:230000
ZNF280A   230000 perm   66 sec   (3461 perm/sec)   p_kst 4.544739e-01   p_cons 4.934783e-03   p_joint 1.570000e-02

Joint ci ratio: 6.407763e-02	ci left: 1.486192e-02	ci right 1.584983e-02	k: 3684	n:240000
Cons ci ratio: 1.134007e-01	ci left: 4.673128e-03	ci right 5.238929e-03	k: 1188	n:240000
KS ci ratio: 8.763109e-03	ci left: 4.526772e-01	ci right 4.566656e-01	k: 109121	n:240000
ZNF280A   240000 perm   70 sec   (3417 perm/sec)   p_kst 4.546708e-01   p_cons 4.950000e-03   p_joint 1.535000e-02

Joint ci ratio: 6.296267e-02	ci left: 1.478704e-02	ci right 1.575225e-02	k: 3816	n:250000
Cons ci ratio: 1.111340e-01	ci left: 4.676700e-03	ci right 5.230873e-03	k: 1237	n:250000
KS ci ratio: 8.585625e-03	ci left: 4.527426e-01	ci right 4.566504e-01	k: 113674	n:250000
ZNF280A   250000 perm   74 sec   (3373 perm/sec)   p_kst 4.546960e-01   p_cons 4.948000e-03   p_joint 1.526400e-02

Joint ci ratio: 6.196770e-02	ci left: 1.468776e-02	ci right 1.563079e-02	k: 3940	n:260000
Cons ci ratio: 1.091259e-01	ci left: 4.668875e-03	ci right 5.211482e-03	k: 1283	n:260000
KS ci ratio: 8.418114e-03	ci left: 4.528269e-01	ci right 4.566587e-01	k: 118233	n:260000
ZNF280A   260000 perm   78 sec   (3332 perm/sec)   p_kst 4.547423e-01   p_cons 4.934615e-03   p_joint 1.515385e-02

Joint ci ratio: 6.098795e-02	ci left: 1.461053e-02	ci right 1.553325e-02	k: 4068	n:270000
Cons ci ratio: 1.069404e-01	ci left: 4.686948e-03	ci right 5.220060e-03	k: 1336	n:270000
KS ci ratio: 8.262508e-03	ci left: 4.527575e-01	ci right 4.565176e-01	k: 122752	n:270000
ZNF280A   270000 perm   82 sec   (3292 perm/sec)   p_kst 4.546370e-01   p_cons 4.948148e-03   p_joint 1.506667e-02

Joint ci ratio: 6.304008e-02	ci left: 1.319183e-02	ci right 1.405400e-02	k: 3813	n:280000
Cons ci ratio: 1.051475e-01	ci left: 4.679485e-03	ci right 5.202272e-03	k: 1382	n:280000
KS ci ratio: 8.115866e-03	ci left: 4.526544e-01	ci right 4.563466e-01	k: 127260	n:280000
ZNF280A   280000 perm   86 sec   (3251 perm/sec)   p_kst 4.545000e-01   p_cons 4.935714e-03   p_joint 1.361786e-02

Joint ci ratio: 6.280527e-02	ci left: 1.283868e-02	ci right 1.367453e-02	k: 3843	n:290000
Cons ci ratio: 1.035512e-01	ci left: 4.662527e-03	ci right 5.175030e-03	k: 1425	n:290000
KS ci ratio: 7.974268e-03	ci left: 4.527141e-01	ci right 4.563420e-01	k: 131813	n:290000
ZNF280A   290000 perm   90 sec   (3211 perm/sec)   p_kst 4.545276e-01   p_cons 4.913793e-03   p_joint 1.325172e-02

Joint ci ratio: 6.177761e-02	ci left: 1.283403e-02	ci right 1.365542e-02	k: 3972	n:300000
Cons ci ratio: 1.018862e-01	ci left: 4.659751e-03	ci right 5.163220e-03	k: 1472	n:300000
KS ci ratio: 7.839515e-03	ci left: 4.527903e-01	ci right 4.563572e-01	k: 136372	n:300000
ZNF280A   300000 perm   95 sec   (3170 perm/sec)   p_kst 4.545733e-01   p_cons 4.906667e-03   p_joint 1.324000e-02

Joint ci ratio: 6.103294e-02	ci left: 1.273128e-02	ci right 1.353592e-02	k: 4070	n:310000
Cons ci ratio: 1.001666e-01	ci left: 4.669797e-03	ci right 5.165335e-03	k: 1523	n:310000
KS ci ratio: 7.714130e-03	ci left: 4.526848e-01	ci right 4.561935e-01	k: 140876	n:310000
ZNF280A   310000 perm   99 sec   (3130 perm/sec)   p_kst 4.544387e-01   p_cons 4.912903e-03   p_joint 1.312903e-02

Joint ci ratio: 5.543753e-02	ci left: 1.495769e-02	ci right 1.581361e-02	k: 4922	n:320000
Cons ci ratio: 9.821833e-02	ci left: 4.709766e-03	ci right 5.199265e-03	k: 1584	n:320000
KS ci ratio: 7.594000e-03	ci left: 4.526237e-01	ci right 4.560771e-01	k: 145392	n:320000
ZNF280A   320000 perm   104 sec   (3091 perm/sec)   p_kst 4.543500e-01   p_cons 4.950000e-03   p_joint 1.538125e-02

Outputting figure to mutsig2_images.part000000000196/ZNF280A.4_1633_320000_0.45435_0.00495_0.015381.png
                gene_name: ZNF280A
               theta_stop: 0.098 
                    nperm: 320000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.0050 
      ci_cons_bounds_left: 0.0047 
     ci_cons_bounds_right: 0.0052 
                  p_joint: 0.015 
     ci_joint_bounds_left: 0.015 
    ci_joint_bounds_right: 0.016 

Current progress: 32 percent done.
ZNF311
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.660544e-02	ci left: 6.753898e-01	ci right 6.937026e-01	k: 6846	n:10000
Cons ci ratio: 2.530722e-02	ci left: 6.967598e-01	ci right 7.147202e-01	k: 7058	n:10000
KS ci ratio: 3.729637e-02	ci left: 5.149562e-01	ci right 5.346293e-01	k: 5248	n:10000
ZNF311   10000 perm   2 sec   (5933 perm/sec)   p_kst 5.248000e-01   p_cons 7.058000e-01   p_joint 6.846000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF311.4_2025_10000_0.5248_0.7058_0.6846.png
                gene_name: ZNF311
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.69 

Current progress: 33 percent done.
ZNF331
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.728524e-02	ci left: 2.447989e-01	ci right 2.619450e-01	k: 2533	n:10000
Cons ci ratio: 1.900600e-01	ci left: 3.691153e-02	ci right 4.475883e-02	k: 407	n:10000
KS ci ratio: 3.501845e-02	ci left: 5.462969e-01	ci right 5.658704e-01	k: 5561	n:10000
ZNF331   10000 perm   2 sec   (5893 perm/sec)   p_kst 5.561000e-01   p_cons 4.070000e-02   p_joint 2.533000e-01

Joint ci ratio: 6.454585e-02	ci left: 1.506511e-01	ci right 1.607492e-01	k: 3113	n:20000
Cons ci ratio: 1.290471e-01	ci left: 4.124750e-02	ci right 4.698598e-02	k: 881	n:20000
KS ci ratio: 2.471325e-02	ci left: 5.501829e-01	ci right 5.640005e-01	k: 11142	n:20000
ZNF331   20000 perm   4 sec   (5280 perm/sec)   p_kst 5.571000e-01   p_cons 4.405000e-02   p_joint 1.556500e-01

Joint ci ratio: 5.635030e-02	ci left: 1.349720e-01	ci right 1.428314e-01	k: 4166	n:30000
Cons ci ratio: 1.103944e-01	ci left: 3.810255e-02	ci right 4.258702e-02	k: 1209	n:30000
KS ci ratio: 2.012697e-02	ci left: 5.527253e-01	ci right 5.639967e-01	k: 16751	n:30000
ZNF331   30000 perm   6 sec   (5044 perm/sec)   p_kst 5.583667e-01   p_cons 4.030000e-02   p_joint 1.388667e-01

Joint ci ratio: 5.049747e-02	ci left: 1.276090e-01	ci right 1.342447e-01	k: 5236	n:40000
Cons ci ratio: 9.614415e-02	ci left: 3.797848e-02	ci right 4.183868e-02	k: 1595	n:40000
KS ci ratio: 1.743566e-02	ci left: 5.533418e-01	ci right 5.630997e-01	k: 22329	n:40000
ZNF331   40000 perm   8 sec   (4884 perm/sec)   p_kst 5.582250e-01   p_cons 3.987500e-02   p_joint 1.309000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF331.4_1404_40000_0.55822_0.039875_0.1309.png
                gene_name: ZNF331
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.040 
      ci_cons_bounds_left: 0.038 
     ci_cons_bounds_right: 0.042 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 35 percent done.
ZNF385B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.656007e-02	ci left: 1.996866e-01	ci right 2.156840e-01	k: 2076	n:10000
Cons ci ratio: 1.451179e-01	ci left: 6.304562e-02	ci right 7.300781e-02	k: 679	n:10000
KS ci ratio: 2.334384e-02	ci left: 7.294651e-01	ci right 7.467959e-01	k: 7382	n:10000
ZNF385B   10000 perm   2 sec   (6223 perm/sec)   p_kst 7.382000e-01   p_cons 6.790000e-02   p_joint 2.076000e-01

Joint ci ratio: 4.450356e-02	ci left: 2.732385e-01	ci right 2.857257e-01	k: 5589	n:20000
Cons ci ratio: 1.061339e-01	ci left: 6.045150e-02	ci right 6.727598e-02	k: 1276	n:20000
KS ci ratio: 1.688281e-02	ci left: 7.231848e-01	ci right 7.355485e-01	k: 14588	n:20000
ZNF385B   20000 perm   4 sec   (5478 perm/sec)   p_kst 7.294000e-01   p_cons 6.380000e-02   p_joint 2.794500e-01

Joint ci ratio: 3.919281e-02	ci left: 2.451409e-01	ci right 2.549742e-01	k: 7501	n:30000
Cons ci ratio: 8.635796e-02	ci left: 6.148468e-02	ci right 6.706674e-02	k: 1927	n:30000
KS ci ratio: 1.382907e-02	ci left: 7.230601e-01	ci right 7.331624e-01	k: 21844	n:30000
ZNF385B   30000 perm   6 sec   (5261 perm/sec)   p_kst 7.281333e-01   p_cons 6.423333e-02   p_joint 2.500333e-01

Outputting figure to mutsig2_images.part000000000196/ZNF385B.4_1477_30000_0.72813_0.064233_0.25003.png
                gene_name: ZNF385B
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.064 
      ci_cons_bounds_left: 0.061 
     ci_cons_bounds_right: 0.067 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.25 

Current progress: 37 percent done.
ZNF398
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.749955e-02	ci left: 3.080829e-01	ci right 3.264237e-01	k: 3172	n:10000
Cons ci ratio: 6.879415e-02	ci left: 2.365957e-01	ci right 2.535531e-01	k: 2450	n:10000
KS ci ratio: 7.662992e-02	ci left: 1.993910e-01	ci right 2.153799e-01	k: 2073	n:10000
ZNF398   10000 perm   2 sec   (5608 perm/sec)   p_kst 2.073000e-01   p_cons 2.450000e-01   p_joint 3.172000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF398.4_1953_10000_0.2073_0.245_0.3172.png
                gene_name: ZNF398
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 39 percent done.
ZNF41
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.321220e-01	ci left: 7.553121e-02	ci right 8.631442e-02	k: 808	n:10000
Cons ci ratio: 2.923811e-02	ci left: 6.330162e-01	ci right 6.519008e-01	k: 6425	n:10000
KS ci ratio: 1.831486e-01	ci left: 3.977673e-02	ci right 4.789171e-02	k: 437	n:10000
ZNF41   10000 perm   2 sec   (5586 perm/sec)   p_kst 4.370000e-02   p_cons 6.425000e-01   p_joint 8.080000e-02

Joint ci ratio: 8.186402e-02	ci left: 9.862400e-02	ci right 1.070919e-01	k: 2056	n:20000
Cons ci ratio: 2.057872e-02	ci left: 6.379711e-01	ci right 6.512868e-01	k: 12893	n:20000
KS ci ratio: 1.268801e-01	ci left: 4.265306e-02	ci right 4.847998e-02	k: 910	n:20000
ZNF41   20000 perm   4 sec   (5007 perm/sec)   p_kst 4.550000e-02   p_cons 6.446500e-01   p_joint 1.028000e-01

Joint ci ratio: 6.693283e-02	ci left: 9.915546e-02	ci right 1.060550e-01	k: 3077	n:30000
Cons ci ratio: 1.676055e-02	ci left: 6.403574e-01	ci right 6.512144e-01	k: 19374	n:30000
KS ci ratio: 1.049118e-01	ci left: 4.212918e-02	ci right 4.682621e-02	k: 1333	n:30000
ZNF41   30000 perm   6 sec   (4766 perm/sec)   p_kst 4.443333e-02   p_cons 6.458000e-01   p_joint 1.025667e-01

Joint ci ratio: 5.997251e-02	ci left: 9.359855e-02	ci right 9.941018e-02	k: 3859	n:40000
Cons ci ratio: 1.457073e-02	ci left: 6.393350e-01	ci right 6.487441e-01	k: 25762	n:40000
KS ci ratio: 9.149554e-02	ci left: 4.186405e-02	ci right 4.590250e-02	k: 1754	n:40000
ZNF41   40000 perm   9 sec   (4613 perm/sec)   p_kst 4.385000e-02   p_cons 6.440500e-01   p_joint 9.647500e-02

Outputting figure to mutsig2_images.part000000000196/ZNF41.4_2356_40000_0.04385_0.64405_0.096475.png
                gene_name: ZNF41
               theta_stop: 0.091 
                    nperm: 40000 
                     p_ks: 0.044 
        ci_ks_bounds_left: 0.042 
       ci_ks_bounds_right: 0.046 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.096 
     ci_joint_bounds_left: 0.094 
    ci_joint_bounds_right: 0.099 

Current progress: 40 percent done.
ZNF260
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.861970e-02	ci left: 2.998509e-01	ci right 3.180605e-01	k: 3089	n:10000
Cons ci ratio: 7.441696e-02	ci left: 2.090529e-01	ci right 2.253122e-01	k: 2171	n:10000
KS ci ratio: 4.643716e-02	ci left: 4.063151e-01	ci right 4.257338e-01	k: 4160	n:10000
ZNF260   10000 perm   1 sec   (6869 perm/sec)   p_kst 4.160000e-01   p_cons 2.171000e-01   p_joint 3.089000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF260.3_1243_10000_0.416_0.2171_0.3089.png
                gene_name: ZNF260
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 42 percent done.
ZNF268
Processing conservation and coverage...
Processing mutations... 
Skipping 3 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 44 percent done.
ZNF280B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.340906e-02	ci left: 3.406464e-01	ci right 3.594411e-01	k: 3500	n:10000
Cons ci ratio: 2.727913e-02	ci left: 6.644110e-01	ci right 6.828878e-01	k: 6737	n:10000
KS ci ratio: 7.771862e-02	ci left: 1.948582e-01	ci right 2.107153e-01	k: 2027	n:10000
ZNF280B   10000 perm   2 sec   (6244 perm/sec)   p_kst 2.027000e-01   p_cons 6.737000e-01   p_joint 3.500000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF280B.3_1636_10000_0.2027_0.6737_0.35.png
                gene_name: ZNF280B
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 46 percent done.
ZNF280D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.783125e-02	ci left: 3.920712e-01	ci right 4.113861e-01	k: 4017	n:10000
Cons ci ratio: 8.455437e-02	ci left: 1.693677e-01	ci right 1.844210e-01	k: 1768	n:10000
KS ci ratio: 3.950888e-02	ci left: 4.861529e-01	ci right 5.058495e-01	k: 4960	n:10000
ZNF280D   10000 perm   2 sec   (5448 perm/sec)   p_kst 4.960000e-01   p_cons 1.768000e-01   p_joint 4.017000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF280D.3_3116_10000_0.496_0.1768_0.4017.png
                gene_name: ZNF280D
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 47 percent done.
ZNF282
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.552890e-01	ci left: 5.523135e-02	ci right 6.462705e-02	k: 598	n:10000
Cons ci ratio: 3.981388e-01	ci left: 7.692674e-03	ci right 1.160097e-02	k: 95	n:10000
KS ci ratio: 1.824899e-02	ci left: 8.142578e-01	ci right 8.293542e-01	k: 8219	n:10000
ZNF282   10000 perm   2 sec   (5895 perm/sec)   p_kst 8.219000e-01   p_cons 9.500000e-03   p_joint 5.980000e-02

Joint ci ratio: 1.640659e-01	ci left: 2.546943e-02	ci right 3.006924e-02	k: 554	n:20000
Cons ci ratio: 2.924988e-01	ci left: 7.598793e-03	ci right 1.024694e-02	k: 177	n:20000
KS ci ratio: 1.280649e-02	ci left: 8.187514e-01	ci right 8.293542e-01	k: 16482	n:20000
ZNF282   20000 perm   4 sec   (5298 perm/sec)   p_kst 8.241000e-01   p_cons 8.850000e-03   p_joint 2.770000e-02

Joint ci ratio: 1.262519e-01	ci left: 2.916455e-02	ci right 3.312694e-02	k: 933	n:30000
Cons ci ratio: 2.352951e-01	ci left: 8.087922e-03	ci right 1.027538e-02	k: 274	n:30000
KS ci ratio: 1.044550e-02	ci left: 8.200465e-01	ci right 8.286906e-01	k: 24732	n:30000
ZNF282   30000 perm   6 sec   (5060 perm/sec)   p_kst 8.244000e-01   p_cons 9.133333e-03   p_joint 3.110000e-02

Joint ci ratio: 1.141239e-01	ci left: 2.701267e-02	ci right 3.030623e-02	k: 1145	n:40000
Cons ci ratio: 2.020189e-01	ci left: 8.382601e-03	ci right 1.028965e-02	k: 372	n:40000
KS ci ratio: 9.044455e-03	ci left: 8.206858e-01	ci right 8.281671e-01	k: 32978	n:40000
ZNF282   40000 perm   8 sec   (4880 perm/sec)   p_kst 8.244500e-01   p_cons 9.300000e-03   p_joint 2.862500e-02

Joint ci ratio: 8.794063e-02	ci left: 3.653675e-02	ci right 3.991713e-02	k: 1910	n:50000
Cons ci ratio: 1.598797e-01	ci left: 1.092953e-02	ci right 1.284776e-02	k: 593	n:50000
KS ci ratio: 8.084266e-03	ci left: 8.212780e-01	ci right 8.279643e-01	k: 41232	n:50000
ZNF282   50000 perm   10 sec   (4764 perm/sec)   p_kst 8.246400e-01   p_cons 1.186000e-02   p_joint 3.820000e-02

Joint ci ratio: 1.079186e-01	ci left: 2.035428e-02	ci right 2.269232e-02	k: 1290	n:60000
Cons ci ratio: 1.647256e-01	ci left: 8.579401e-03	ci right 1.013528e-02	k: 560	n:60000
KS ci ratio: 7.417861e-03	ci left: 8.200731e-01	ci right 8.261956e-01	k: 49389	n:60000
ZNF282   60000 perm   13 sec   (4663 perm/sec)   p_kst 8.231500e-01   p_cons 9.333333e-03   p_joint 2.150000e-02

Joint ci ratio: 1.035243e-01	ci left: 1.903136e-02	ci right 2.112297e-02	k: 1404	n:70000
Cons ci ratio: 1.520965e-01	ci left: 8.684658e-03	ci right 1.012788e-02	k: 657	n:70000
KS ci ratio: 6.858999e-03	ci left: 8.206696e-01	ci right 8.263321e-01	k: 57646	n:70000
ZNF282   70000 perm   15 sec   (4534 perm/sec)   p_kst 8.235143e-01   p_cons 9.385714e-03   p_joint 2.005714e-02

Joint ci ratio: 9.341421e-02	ci left: 2.053047e-02	ci right 2.255443e-02	k: 1722	n:80000
Cons ci ratio: 1.415154e-01	ci left: 8.827333e-03	ci right 1.018359e-02	k: 759	n:80000
KS ci ratio: 6.430103e-03	ci left: 8.202115e-01	ci right 8.255150e-01	k: 65830	n:80000
ZNF282   80000 perm   18 sec   (4446 perm/sec)   p_kst 8.228750e-01   p_cons 9.487500e-03   p_joint 2.152500e-02

Joint ci ratio: 8.854862e-02	ci left: 2.036661e-02	ci right 2.226441e-02	k: 1917	n:90000
Cons ci ratio: 1.330300e-01	ci left: 8.919522e-03	ci right 1.020128e-02	k: 859	n:90000
KS ci ratio: 6.064144e-03	ci left: 8.202783e-01	ci right 8.252787e-01	k: 74051	n:90000
ZNF282   90000 perm   21 sec   (4360 perm/sec)   p_kst 8.227889e-01   p_cons 9.544444e-03   p_joint 2.130000e-02

Joint ci ratio: 7.229577e-02	ci left: 2.752650e-02	ci right 2.960097e-02	k: 2855	n:100000
Cons ci ratio: 1.261072e-01	ci left: 8.966156e-03	ci right 1.018254e-02	k: 956	n:100000
KS ci ratio: 5.766730e-03	ci left: 8.197053e-01	ci right 8.244560e-01	k: 82209	n:100000
ZNF282   100000 perm   23 sec   (4280 perm/sec)   p_kst 8.220900e-01   p_cons 9.560000e-03   p_joint 2.855000e-02

Joint ci ratio: 7.011892e-02	ci left: 2.665768e-02	ci right 2.860370e-02	k: 3038	n:110000
Cons ci ratio: 1.194223e-01	ci left: 9.120398e-03	ci right 1.028749e-02	k: 1066	n:110000
KS ci ratio: 5.475601e-03	ci left: 8.210330e-01	ci right 8.255500e-01	k: 90563	n:110000
ZNF282   110000 perm   26 sec   (4203 perm/sec)   p_kst 8.233000e-01   p_cons 9.690909e-03   p_joint 2.761818e-02

Joint ci ratio: 6.050961e-02	ci left: 3.276822e-02	ci right 3.482106e-02	k: 4054	n:120000
Cons ci ratio: 1.147871e-01	ci left: 9.072208e-03	ci right 1.018502e-02	k: 1154	n:120000
KS ci ratio: 5.239783e-03	ci left: 8.212807e-01	ci right 8.256036e-01	k: 98814	n:120000
ZNF282   120000 perm   29 sec   (4139 perm/sec)   p_kst 8.234500e-01   p_cons 9.616667e-03   p_joint 3.378333e-02

Joint ci ratio: 6.339711e-02	ci left: 2.766275e-02	ci right 2.948144e-02	k: 3713	n:130000
Cons ci ratio: 1.098966e-01	ci left: 9.159369e-03	ci right 1.023190e-02	k: 1259	n:130000
KS ci ratio: 5.035350e-03	ci left: 8.213006e-01	ci right 8.254542e-01	k: 107040	n:130000
ZNF282   130000 perm   32 sec   (4071 perm/sec)   p_kst 8.233846e-01   p_cons 9.684615e-03   p_joint 2.856154e-02

Joint ci ratio: 6.367534e-02	ci left: 2.551722e-02	ci right 2.720247e-02	k: 3689	n:140000
Cons ci ratio: 1.055822e-01	ci left: 9.234940e-03	ci right 1.027123e-02	k: 1364	n:140000
KS ci ratio: 4.857884e-03	ci left: 8.210335e-01	ci right 8.250388e-01	k: 115226	n:140000
ZNF282   140000 perm   35 sec   (4015 perm/sec)   p_kst 8.230429e-01   p_cons 9.742857e-03   p_joint 2.635000e-02

Joint ci ratio: 6.289893e-02	ci left: 2.444552e-02	ci right 2.603957e-02	k: 3785	n:150000
Cons ci ratio: 1.022318e-01	ci left: 9.210173e-03	ci right 1.020892e-02	k: 1455	n:150000
KS ci ratio: 4.688694e-03	ci left: 8.213803e-01	ci right 8.252472e-01	k: 123498	n:150000
ZNF282   150000 perm   38 sec   (3908 perm/sec)   p_kst 8.233200e-01   p_cons 9.700000e-03   p_joint 2.523333e-02

Joint ci ratio: 6.170098e-02	ci left: 2.384649e-02	ci right 2.537080e-02	k: 3936	n:160000
Cons ci ratio: 9.937608e-02	ci left: 9.152380e-03	ci right 1.011551e-02	k: 1540	n:160000
KS ci ratio: 4.537291e-03	ci left: 8.216041e-01	ci right 8.253466e-01	k: 131757	n:160000
ZNF282   160000 perm   42 sec   (3845 perm/sec)   p_kst 8.234813e-01   p_cons 9.625000e-03   p_joint 2.460000e-02

Outputting figure to mutsig2_images.part000000000196/ZNF282.3_2048_160000_0.82348_0.009625_0.0246.png
                gene_name: ZNF282
               theta_stop: 0.099 
                    nperm: 160000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.0096 
      ci_cons_bounds_left: 0.0092 
     ci_cons_bounds_right: 0.010 
                  p_joint: 0.025 
     ci_joint_bounds_left: 0.024 
    ci_joint_bounds_right: 0.025 

Current progress: 49 percent done.
ZNF283
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.333872e-02	ci left: 3.412425e-01	ci right 3.600446e-01	k: 3506	n:10000
Cons ci ratio: 1.171404e-01	ci left: 9.477139e-02	ci right 1.066624e-01	k: 1006	n:10000
KS ci ratio: 3.291772e-02	ci left: 5.766736e-01	ci right 5.960761e-01	k: 5864	n:10000
ZNF283   10000 perm   2 sec   (6047 perm/sec)   p_kst 5.864000e-01   p_cons 1.006000e-01   p_joint 3.506000e-01

Joint ci ratio: 4.620395e-02	ci left: 2.584961e-01	ci right 2.707724e-01	k: 5292	n:20000
Cons ci ratio: 8.088140e-02	ci left: 1.008332e-01	ci right 1.093820e-01	k: 2101	n:20000
KS ci ratio: 2.321056e-02	ci left: 5.809408e-01	ci right 5.946337e-01	k: 11756	n:20000
ZNF283   20000 perm   4 sec   (5393 perm/sec)   p_kst 5.878000e-01   p_cons 1.050500e-01   p_joint 2.646000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF283.3_2056_20000_0.5878_0.10505_0.2646.png
                gene_name: ZNF283
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 51 percent done.
ZNF285
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.132760e-02	ci left: 3.588357e-01	ci right 3.778410e-01	k: 3683	n:10000
Cons ci ratio: 8.286976e-03	ci left: 9.531520e-01	ci right 9.611789e-01	k: 9573	n:10000
KS ci ratio: 9.240747e-02	ci left: 1.454077e-01	ci right 1.595954e-01	k: 1524	n:10000
ZNF285   10000 perm   2 sec   (5992 perm/sec)   p_kst 1.524000e-01   p_cons 9.573000e-01   p_joint 3.683000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF285.3_1785_10000_0.1524_0.9573_0.3683.png
                gene_name: ZNF285
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 53 percent done.
ZNF286A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.956496e-02	ci left: 2.325450e-01	ci right 2.494061e-01	k: 2409	n:10000
Cons ci ratio: 6.726746e-02	ci left: 2.448978e-01	ci right 2.620461e-01	k: 2534	n:10000
KS ci ratio: 1.554271e-01	ci left: 5.513502e-02	ci right 6.452344e-02	k: 597	n:10000
ZNF286A   10000 perm   2 sec   (6267 perm/sec)   p_kst 5.970000e-02   p_cons 2.534000e-01   p_joint 2.409000e-01

Joint ci ratio: 6.725318e-02	ci left: 1.402950e-01	ci right 1.501084e-01	k: 2903	n:20000
Cons ci ratio: 4.835127e-02	ci left: 2.413327e-01	ci right 2.533408e-01	k: 4946	n:20000
KS ci ratio: 1.106458e-01	ci left: 5.577376e-02	ci right 6.235516e-02	k: 1180	n:20000
ZNF286A   20000 perm   4 sec   (5568 perm/sec)   p_kst 5.900000e-02   p_cons 2.473000e-01   p_joint 1.451500e-01

Joint ci ratio: 6.827545e-02	ci left: 9.560984e-02	ci right 1.024014e-01	k: 2969	n:30000
Cons ci ratio: 3.961886e-02	ci left: 2.411346e-01	ci right 2.509146e-01	k: 7380	n:30000
KS ci ratio: 8.866577e-02	ci left: 5.844827e-02	ci right 6.390376e-02	k: 1834	n:30000
ZNF286A   30000 perm   6 sec   (5298 perm/sec)   p_kst 6.113333e-02   p_cons 2.460000e-01   p_joint 9.896667e-02

Outputting figure to mutsig2_images.part000000000196/ZNF286A.3_1586_30000_0.061133_0.246_0.098967.png
                gene_name: ZNF286A
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.061 
        ci_ks_bounds_left: 0.058 
       ci_ks_bounds_right: 0.064 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.099 
     ci_joint_bounds_left: 0.096 
    ci_joint_bounds_right: 0.10 

Current progress: 54 percent done.
ZNF295
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.083034e-01	ci left: 3.062918e-02	ci right 3.784546e-02	k: 341	n:10000
Cons ci ratio: 5.195093e-02	ci left: 3.532680e-01	ci right 3.722120e-01	k: 3627	n:10000
KS ci ratio: 2.954286e-01	ci left: 1.474309e-02	ci right 1.994354e-02	k: 172	n:10000
ZNF295   10000 perm   2 sec   (5445 perm/sec)   p_kst 1.720000e-02   p_cons 3.627000e-01   p_joint 3.410000e-02

Joint ci ratio: 1.030230e-01	ci left: 6.401222e-02	ci right 7.101415e-02	k: 1349	n:20000
Cons ci ratio: 3.637597e-02	ci left: 3.606137e-01	ci right 3.740249e-01	k: 7346	n:20000
KS ci ratio: 2.027314e-01	ci left: 1.648770e-02	ci right 2.025418e-02	k: 366	n:20000
ZNF295   20000 perm   4 sec   (4895 perm/sec)   p_kst 1.830000e-02   p_cons 3.673000e-01   p_joint 6.745000e-02

Joint ci ratio: 1.335074e-01	ci left: 2.606559e-02	ci right 2.982657e-02	k: 837	n:30000
Cons ci ratio: 3.062004e-02	ci left: 3.478556e-01	ci right 3.587061e-01	k: 10598	n:30000
KS ci ratio: 1.681158e-01	ci left: 1.630199e-02	ci right 1.932576e-02	k: 533	n:30000
ZNF295   30000 perm   6 sec   (4662 perm/sec)   p_kst 1.776667e-02   p_cons 3.532667e-01   p_joint 2.790000e-02

Joint ci ratio: 1.346445e-01	ci left: 1.935127e-02	ci right 2.216890e-02	k: 829	n:40000
Cons ci ratio: 2.649597e-02	ci left: 3.489629e-01	ci right 3.583583e-01	k: 14146	n:40000
KS ci ratio: 1.459064e-01	ci left: 1.643041e-02	ci right 1.904027e-02	k: 708	n:40000
ZNF295   40000 perm   9 sec   (4509 perm/sec)   p_kst 1.770000e-02   p_cons 3.536500e-01   p_joint 2.072500e-02

Joint ci ratio: 1.208170e-01	ci left: 1.937287e-02	ci right 2.188322e-02	k: 1030	n:50000
Cons ci ratio: 2.365084e-02	ci left: 3.503854e-01	ci right 3.587915e-01	k: 17729	n:50000
KS ci ratio: 1.313543e-01	ci left: 1.634938e-02	ci right 1.866712e-02	k: 874	n:50000
ZNF295   50000 perm   11 sec   (4396 perm/sec)   p_kst 1.748000e-02   p_cons 3.545800e-01   p_joint 2.060000e-02

Joint ci ratio: 7.097254e-02	ci left: 4.666357e-02	ci right 5.011362e-02	k: 2902	n:60000
Cons ci ratio: 2.157680e-02	ci left: 3.510369e-01	ci right 3.587105e-01	k: 21292	n:60000
KS ci ratio: 1.186507e-01	ci left: 1.680559e-02	ci right 1.894141e-02	k: 1071	n:60000
ZNF295   60000 perm   14 sec   (4300 perm/sec)   p_kst 1.785000e-02   p_cons 3.548667e-01   p_joint 4.836667e-02

Joint ci ratio: 8.148860e-02	ci left: 3.069448e-02	ci right 3.331593e-02	k: 2239	n:70000
Cons ci ratio: 1.996367e-02	ci left: 3.516109e-01	ci right 3.587154e-01	k: 24861	n:70000
KS ci ratio: 1.101486e-01	ci left: 1.679168e-02	ci right 1.876287e-02	k: 1243	n:70000
ZNF295   70000 perm   17 sec   (4207 perm/sec)   p_kst 1.775714e-02   p_cons 3.551571e-01   p_joint 3.198571e-02

Joint ci ratio: 7.160164e-02	ci left: 3.481797e-02	ci right 3.741581e-02	k: 2888	n:80000
Cons ci ratio: 1.869711e-02	ci left: 3.512840e-01	ci right 3.579265e-01	k: 28368	n:80000
KS ci ratio: 1.024753e-01	ci left: 1.704123e-02	ci right 1.889396e-02	k: 1436	n:80000
ZNF295   80000 perm   19 sec   (4127 perm/sec)   p_kst 1.795000e-02   p_cons 3.546000e-01   p_joint 3.610000e-02

Joint ci ratio: 7.554934e-02	ci left: 2.794605e-02	ci right 3.015111e-02	k: 2613	n:90000
Cons ci ratio: 1.764071e-02	ci left: 3.511411e-01	ci right 3.574017e-01	k: 31884	n:90000
KS ci ratio: 9.633065e-02	ci left: 1.719565e-02	ci right 1.894672e-02	k: 1625	n:90000
ZNF295   90000 perm   22 sec   (4051 perm/sec)   p_kst 1.805556e-02   p_cons 3.542667e-01   p_joint 2.903333e-02

Outputting figure to mutsig2_images.part000000000196/ZNF295.3_3205_90000_0.018056_0.35427_0.029033.png
                gene_name: ZNF295
               theta_stop: 0.096 
                    nperm: 90000 
                     p_ks: 0.018 
        ci_ks_bounds_left: 0.017 
       ci_ks_bounds_right: 0.019 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.029 
     ci_joint_bounds_left: 0.028 
    ci_joint_bounds_right: 0.030 

Current progress: 56 percent done.
ZNF335
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.453085e-02	ci left: 3.313090e-01	ci right 3.499839e-01	k: 3406	n:10000
Cons ci ratio: 5.864176e-03	ci left: 9.751447e-01	ci right 9.809722e-01	k: 9782	n:10000
KS ci ratio: 7.118065e-02	ci left: 2.243482e-01	ci right 2.410078e-01	k: 2326	n:10000
ZNF335   10000 perm   2 sec   (5291 perm/sec)   p_kst 2.326000e-01   p_cons 9.782000e-01   p_joint 3.406000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF335.3_4137_10000_0.2326_0.9782_0.3406.png
                gene_name: ZNF335
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 58 percent done.
ZNF337
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.379027e-02	ci left: 1.416816e-01	ci right 1.557237e-01	k: 1486	n:10000
Cons ci ratio: 3.080322e-02	ci left: 6.085946e-01	ci right 6.277365e-01	k: 6182	n:10000
KS ci ratio: 1.578270e-01	ci left: 5.349797e-02	ci right 6.276153e-02	k: 580	n:10000
ZNF337   10000 perm   2 sec   (5825 perm/sec)   p_kst 5.800000e-02   p_cons 6.182000e-01   p_joint 1.486000e-01

Joint ci ratio: 8.555098e-02	ci left: 9.092137e-02	ci right 9.909681e-02	k: 1899	n:20000
Cons ci ratio: 2.143306e-02	ci left: 6.190505e-01	ci right 6.325129e-01	k: 12516	n:20000
KS ci ratio: 1.073055e-01	ci left: 5.918404e-02	ci right 6.594382e-02	k: 1250	n:20000
ZNF337   20000 perm   4 sec   (5202 perm/sec)   p_kst 6.250000e-02   p_cons 6.258000e-01   p_joint 9.495000e-02

Joint ci ratio: 5.710043e-02	ci left: 1.318763e-01	ci right 1.396610e-01	k: 4072	n:30000
Cons ci ratio: 1.747167e-02	ci left: 6.210643e-01	ci right 6.320445e-01	k: 18797	n:30000
KS ci ratio: 8.669482e-02	ci left: 6.102746e-02	ci right 6.659071e-02	k: 1913	n:30000
ZNF337   30000 perm   6 sec   (4963 perm/sec)   p_kst 6.376667e-02   p_cons 6.265667e-01   p_joint 1.357333e-01

Outputting figure to mutsig2_images.part000000000196/ZNF337.3_2272_30000_0.063767_0.62657_0.13573.png
                gene_name: ZNF337
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.064 
        ci_ks_bounds_left: 0.061 
       ci_ks_bounds_right: 0.067 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 60 percent done.
ZNF341
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.398911e-02	ci left: 3.357785e-01	ci right 3.545118e-01	k: 3451	n:10000
Cons ci ratio: 7.609790e-02	ci left: 2.016579e-01	ci right 2.177115e-01	k: 2096	n:10000
KS ci ratio: 5.526715e-02	ci left: 3.253512e-01	ci right 3.439452e-01	k: 3346	n:10000
ZNF341   10000 perm   2 sec   (5697 perm/sec)   p_kst 3.346000e-01   p_cons 2.096000e-01   p_joint 3.451000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF341.3_2604_10000_0.3346_0.2096_0.3451.png
                gene_name: ZNF341
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 61 percent done.
ZNF383
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.215513e-01	ci left: 8.844634e-02	ci right 9.999129e-02	k: 941	n:10000
Cons ci ratio: 7.984796e-02	ci left: 1.863882e-01	ci right 2.019904e-01	k: 1941	n:10000
KS ci ratio: 1.278700e-01	ci left: 8.038196e-02	ci right 9.146065e-02	k: 858	n:10000
ZNF383   10000 perm   2 sec   (6167 perm/sec)   p_kst 8.580000e-02   p_cons 1.941000e-01   p_joint 9.410000e-02

Joint ci ratio: 9.292732e-02	ci left: 7.789098e-02	ci right 8.553115e-02	k: 1633	n:20000
Cons ci ratio: 5.871399e-02	ci left: 1.768718e-01	ci right 1.876208e-01	k: 3644	n:20000
KS ci ratio: 9.150171e-02	ci left: 8.019134e-02	ci right 8.793009e-02	k: 1680	n:20000
ZNF383   20000 perm   4 sec   (5496 perm/sec)   p_kst 8.400000e-02   p_cons 1.822000e-01   p_joint 8.165000e-02

Outputting figure to mutsig2_images.part000000000196/ZNF383.3_1444_20000_0.084_0.1822_0.08165.png
                gene_name: ZNF383
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.084 
        ci_ks_bounds_left: 0.080 
       ci_ks_bounds_right: 0.088 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.082 
     ci_joint_bounds_left: 0.078 
    ci_joint_bounds_right: 0.086 

Current progress: 63 percent done.
ZNF384
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.103001e-02	ci left: 9.214164e-01	ci right 9.317334e-01	k: 9267	n:10000
KS ci ratio: 4.228605e-02	ci left: 4.522906e-01	ci right 4.719315e-01	k: 4621	n:10000
ZNF384   10000 perm   2 sec   (6195 perm/sec)   p_kst 4.621000e-01   p_cons 9.267000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000196/ZNF384.3_1770_10000_0.4621_0.9267_1.png
                gene_name: ZNF384
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
ZNF391
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.358022e-02	ci left: 1.727107e-01	ci right 1.878760e-01	k: 1802	n:10000
Cons ci ratio: 4.921176e-02	ci left: 3.785325e-01	ci right 3.977327e-01	k: 3881	n:10000
KS ci ratio: 1.204255e-01	ci left: 9.000254e-02	ci right 1.016341e-01	k: 957	n:10000
ZNF391   10000 perm   2 sec   (6270 perm/sec)   p_kst 9.570000e-02   p_cons 3.881000e-01   p_joint 1.802000e-01

Joint ci ratio: 5.153164e-02	ci left: 2.185840e-01	ci right 2.301962e-01	k: 4487	n:20000
Cons ci ratio: 3.544365e-02	ci left: 3.727178e-01	ci right 3.862172e-01	k: 7589	n:20000
KS ci ratio: 8.582577e-02	ci left: 9.038200e-02	ci right 9.853634e-02	k: 1888	n:20000
ZNF391   20000 perm   4 sec   (5569 perm/sec)   p_kst 9.440000e-02   p_cons 3.794500e-01   p_joint 2.243500e-01

Outputting figure to mutsig2_images.part000000000196/ZNF391.3_1081_20000_0.0944_0.37945_0.22435.png
                gene_name: ZNF391
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.094 
        ci_ks_bounds_left: 0.090 
       ci_ks_bounds_right: 0.099 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 67 percent done.
ZNF408
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.449803e-01	ci left: 5.992474e-03	ci right 9.503426e-03	k: 76	n:10000
Cons ci ratio: 1.063013e-01	ci left: 1.133015e-01	ci right 1.261210e-01	k: 1196	n:10000
KS ci ratio: 4.809000e-01	ci left: 5.020040e-03	ci right 8.277383e-03	k: 65	n:10000
ZNF408   10000 perm   2 sec   (5810 perm/sec)   p_kst 6.500000e-03   p_cons 1.196000e-01   p_joint 7.600000e-03

Joint ci ratio: 1.852381e-01	ci left: 1.986864e-02	ci right 2.397200e-02	k: 437	n:20000
Cons ci ratio: 7.563504e-02	ci left: 1.139039e-01	ci right 1.229073e-01	k: 2367	n:20000
KS ci ratio: 3.349842e-01	ci left: 5.662386e-03	ci right 7.984485e-03	k: 135	n:20000
ZNF408   20000 perm   4 sec   (5191 perm/sec)   p_kst 6.750000e-03   p_cons 1.183500e-01   p_joint 2.185000e-02

Joint ci ratio: 1.979722e-01	ci left: 1.162205e-02	ci right 1.420689e-02	k: 386	n:30000
Cons ci ratio: 6.172657e-02	ci left: 1.148302e-01	ci right 1.221772e-01	k: 3554	n:30000
KS ci ratio: 2.880939e-01	ci left: 5.250338e-03	ci right 7.047323e-03	k: 183	n:30000
ZNF408   30000 perm   6 sec   (4954 perm/sec)   p_kst 6.100000e-03   p_cons 1.184667e-01   p_joint 1.286667e-02

Joint ci ratio: 2.042414e-01	ci left: 8.192693e-03	ci right 1.007960e-02	k: 364	n:40000
Cons ci ratio: 5.343137e-02	ci left: 1.154221e-01	ci right 1.217834e-01	k: 4743	n:40000
KS ci ratio: 2.476424e-01	ci left: 5.454280e-03	ci right 7.018704e-03	k: 248	n:40000
ZNF408   40000 perm   8 sec   (4812 perm/sec)   p_kst 6.200000e-03   p_cons 1.185750e-01   p_joint 9.100000e-03

Joint ci ratio: 1.380053e-01	ci left: 1.478310e-02	ci right 1.699362e-02	k: 793	n:50000
Cons ci ratio: 4.783174e-02	ci left: 1.155803e-01	ci right 1.212641e-01	k: 5920	n:50000
KS ci ratio: 2.283346e-01	ci left: 5.190941e-03	ci right 6.547394e-03	k: 292	n:50000
ZNF408   50000 perm   11 sec   (4696 perm/sec)   p_kst 5.840000e-03   p_cons 1.184000e-01   p_joint 1.586000e-02

Joint ci ratio: 1.408203e-01	ci left: 1.185149e-02	ci right 1.366277e-02	k: 764	n:60000
Cons ci ratio: 4.382253e-02	ci left: 1.150822e-01	ci right 1.202549e-01	k: 7059	n:60000
KS ci ratio: 2.129337e-01	ci left: 5.018582e-03	ci right 6.229991e-03	k: 336	n:60000
ZNF408   60000 perm   13 sec   (4597 perm/sec)   p_kst 5.600000e-03   p_cons 1.176500e-01   p_joint 1.273333e-02

Joint ci ratio: 1.384116e-01	ci left: 1.054395e-02	ci right 1.212552e-02	k: 792	n:70000
Cons ci ratio: 4.052350e-02	ci left: 1.155197e-01	ci right 1.203120e-01	k: 8253	n:70000
KS ci ratio: 1.979418e-01	ci left: 5.019877e-03	ci right 6.135994e-03	k: 389	n:70000
ZNF408   70000 perm   16 sec   (4499 perm/sec)   p_kst 5.557143e-03   p_cons 1.179000e-01   p_joint 1.131429e-02

Joint ci ratio: 1.664205e-01	ci left: 6.314104e-03	ci right 7.472091e-03	k: 550	n:80000
Cons ci ratio: 3.795453e-02	ci left: 1.154126e-01	ci right 1.198902e-01	k: 9411	n:80000
KS ci ratio: 1.867902e-01	ci left: 4.963500e-03	ci right 5.997860e-03	k: 437	n:80000
ZNF408   80000 perm   18 sec   (4412 perm/sec)   p_kst 5.462500e-03   p_cons 1.176375e-01   p_joint 6.875000e-03

Joint ci ratio: 1.376281e-01	ci left: 8.318183e-03	ci right 9.558223e-03	k: 803	n:90000
Cons ci ratio: 3.715260e-02	ci left: 1.080290e-01	ci right 1.121295e-01	k: 9906	n:90000
KS ci ratio: 1.760627e-01	ci left: 4.995383e-03	ci right 5.970241e-03	k: 492	n:90000
ZNF408   90000 perm   21 sec   (4331 perm/sec)   p_kst 5.466667e-03   p_cons 1.100667e-01   p_joint 8.922222e-03

Joint ci ratio: 1.408135e-01	ci left: 7.148247e-03	ci right 8.240599e-03	k: 768	n:100000
Cons ci ratio: 3.521332e-02	ci left: 1.083151e-01	ci right 1.122075e-01	k: 11025	n:100000
KS ci ratio: 1.683899e-01	ci left: 4.936009e-03	ci right 5.853038e-03	k: 538	n:100000
ZNF408   100000 perm   24 sec   (4253 perm/sec)   p_kst 5.380000e-03   p_cons 1.102500e-01   p_joint 7.680000e-03

Joint ci ratio: 1.367169e-01	ci left: 6.910787e-03	ci right 7.933624e-03	k: 815	n:110000
Cons ci ratio: 3.351654e-02	ci left: 1.087433e-01	ci right 1.124591e-01	k: 12165	n:110000
KS ci ratio: 1.604040e-01	ci left: 4.966724e-03	ci right 5.841482e-03	k: 593	n:110000
ZNF408   110000 perm   26 sec   (4180 perm/sec)   p_kst 5.390909e-03   p_cons 1.105909e-01   p_joint 7.409091e-03

Joint ci ratio: 1.241335e-01	ci left: 7.729809e-03	ci right 8.760835e-03	k: 988	n:120000
Cons ci ratio: 3.200837e-02	ci left: 1.093189e-01	ci right 1.128832e-01	k: 13331	n:120000
KS ci ratio: 1.521650e-01	ci left: 5.081355e-03	ci right 5.926146e-03	k: 659	n:120000
ZNF408   120000 perm   29 sec   (4109 perm/sec)   p_kst 5.491667e-03   p_cons 1.110917e-01   p_joint 8.233333e-03

Joint ci ratio: 1.198525e-01	ci left: 7.672141e-03	ci right 8.657680e-03	k: 1060	n:130000
Cons ci ratio: 3.075265e-02	ci left: 1.093889e-01	ci right 1.128131e-01	k: 14442	n:130000
KS ci ratio: 1.462983e-01	ci left: 5.090360e-03	ci right 5.901169e-03	k: 713	n:130000
ZNF408   130000 perm   32 sec   (4041 perm/sec)   p_kst 5.484615e-03   p_cons 1.110923e-01   p_joint 8.153846e-03

Joint ci ratio: 1.170318e-01	ci left: 7.484512e-03	ci right 8.421753e-03	k: 1112	n:140000
Cons ci ratio: 2.961580e-02	ci left: 1.095719e-01	ci right 1.128728e-01	k: 15570	n:140000
KS ci ratio: 1.405110e-01	ci left: 5.139970e-03	ci right 5.923581e-03	k: 773	n:140000
ZNF408   140000 perm   35 sec   (3979 perm/sec)   p_kst 5.521429e-03   p_cons 1.112143e-01   p_joint 7.942857e-03

Joint ci ratio: 1.212490e-01	ci left: 6.500239e-03	ci right 7.345656e-03	k: 1037	n:150000
Cons ci ratio: 2.860311e-02	ci left: 1.096861e-01	ci right 1.128756e-01	k: 16691	n:150000
KS ci ratio: 1.372767e-01	ci left: 5.035382e-03	ci right 5.783932e-03	k: 810	n:150000
ZNF408   150000 perm   38 sec   (3917 perm/sec)   p_kst 5.400000e-03   p_cons 1.112733e-01   p_joint 6.913333e-03

Joint ci ratio: 1.169318e-01	ci left: 6.566967e-03	ci right 7.388551e-03	k: 1115	n:160000
Cons ci ratio: 2.768418e-02	ci left: 1.098126e-01	ci right 1.129015e-01	k: 17816	n:160000
KS ci ratio: 1.329228e-01	ci left: 5.046766e-03	ci right 5.771333e-03	k: 864	n:160000
ZNF408   160000 perm   41 sec   (3858 perm/sec)   p_kst 5.400000e-03   p_cons 1.113500e-01   p_joint 6.968750e-03

Joint ci ratio: 9.656729e-02	ci left: 9.136179e-03	ci right 1.006889e-02	k: 1631	n:170000
Cons ci ratio: 2.687323e-02	ci left: 1.097443e-01	ci right 1.127395e-01	k: 18910	n:170000
KS ci ratio: 1.286772e-01	ci left: 5.079917e-03	ci right 5.784170e-03	k: 922	n:170000
ZNF408   170000 perm   45 sec   (3798 perm/sec)   p_kst 5.423529e-03   p_cons 1.112353e-01   p_joint 9.594118e-03

Joint ci ratio: 9.614840e-02	ci left: 8.709846e-03	ci right 9.594960e-03	k: 1646	n:180000
Cons ci ratio: 2.610685e-02	ci left: 1.098561e-01	ci right 1.127675e-01	k: 20035	n:180000
KS ci ratio: 1.250064e-01	ci left: 5.093562e-03	ci right 5.778070e-03	k: 977	n:180000
ZNF408   180000 perm   48 sec   (3741 perm/sec)   p_kst 5.427778e-03   p_cons 1.113056e-01   p_joint 9.144444e-03

Joint ci ratio: 9.628979e-02	ci left: 8.230789e-03	ci right 9.068516e-03	k: 1642	n:190000
Cons ci ratio: 2.539711e-02	ci left: 1.099991e-01	ci right 1.128339e-01	k: 21168	n:190000
KS ci ratio: 1.214557e-01	ci left: 5.121338e-03	ci right 5.788624e-03	k: 1035	n:190000
ZNF408   190000 perm   52 sec   (3683 perm/sec)   p_kst 5.447368e-03   p_cons 1.114105e-01   p_joint 8.642105e-03

Joint ci ratio: 9.546494e-02	ci left: 7.960720e-03	ci right 8.763628e-03	k: 1671	n:200000
Cons ci ratio: 2.474602e-02	ci left: 1.100988e-01	ci right 1.128624e-01	k: 22295	n:200000
KS ci ratio: 1.183545e-01	ci left: 5.132025e-03	ci right 5.782435e-03	k: 1090	n:200000
ZNF408   200000 perm   55 sec   (3630 perm/sec)   p_kst 5.450000e-03   p_cons 1.114750e-01   p_joint 8.355000e-03

Joint ci ratio: 9.421437e-02	ci left: 7.790808e-03	ci right 8.565717e-03	k: 1716	n:210000
Cons ci ratio: 2.412923e-02	ci left: 1.102989e-01	ci right 1.129975e-01	k: 23445	n:210000
KS ci ratio: 1.153277e-01	ci left: 5.155766e-03	ci right 5.791335e-03	k: 1148	n:210000
ZNF408   210000 perm   59 sec   (3578 perm/sec)   p_kst 5.466667e-03   p_cons 1.116429e-01   p_joint 8.171429e-03

Joint ci ratio: 9.006907e-02	ci left: 8.151708e-03	ci right 8.924961e-03	k: 1877	n:220000
Cons ci ratio: 2.356986e-02	ci left: 1.103685e-01	ci right 1.130054e-01	k: 24570	n:220000
KS ci ratio: 1.128041e-01	ci left: 5.151032e-03	ci right 5.771199e-03	k: 1200	n:220000
ZNF408   220000 perm   62 sec   (3528 perm/sec)   p_kst 5.454545e-03   p_cons 1.116818e-01   p_joint 8.531818e-03

Joint ci ratio: 8.998937e-02	ci left: 7.814224e-03	ci right 8.554772e-03	k: 1881	n:230000
Cons ci ratio: 2.303657e-02	ci left: 1.105279e-01	ci right 1.131080e-01	k: 25717	n:230000
KS ci ratio: 1.108402e-01	ci left: 5.108795e-03	ci right 5.712468e-03	k: 1243	n:230000
ZNF408   230000 perm   66 sec   (3481 perm/sec)   p_kst 5.404348e-03   p_cons 1.118130e-01   p_joint 8.178261e-03

Joint ci ratio: 8.866144e-02	ci left: 7.720809e-03	ci right 8.441147e-03	k: 1938	n:240000
Cons ci ratio: 2.257009e-02	ci left: 1.103926e-01	ci right 1.129168e-01	k: 26796	n:240000
KS ci ratio: 1.083424e-01	ci left: 5.130974e-03	ci right 5.722733e-03	k: 1301	n:240000
ZNF408   240000 perm   70 sec   (3433 perm/sec)   p_kst 5.420833e-03   p_cons 1.116500e-01   p_joint 8.075000e-03

Joint ci ratio: 8.844632e-02	ci left: 7.451045e-03	ci right 8.144439e-03	k: 1948	n:250000
Cons ci ratio: 2.211477e-02	ci left: 1.104120e-01	ci right 1.128850e-01	k: 27911	n:250000
KS ci ratio: 1.089021e-01	ci left: 4.875113e-03	ci right 5.440453e-03	k: 1288	n:250000
ZNF408   250000 perm   74 sec   (3387 perm/sec)   p_kst 5.152000e-03   p_cons 1.116440e-01   p_joint 7.792000e-03

Joint ci ratio: 8.866619e-02	ci left: 7.130566e-03	ci right 7.795869e-03	k: 1939	n:260000
Cons ci ratio: 2.167838e-02	ci left: 1.104993e-01	ci right 1.129248e-01	k: 29044	n:260000
KS ci ratio: 1.071721e-01	ci left: 4.844778e-03	ci right 5.397112e-03	k: 1330	n:260000
ZNF408   260000 perm   78 sec   (3342 perm/sec)   p_kst 5.115385e-03   p_cons 1.117077e-01   p_joint 7.457692e-03

Joint ci ratio: 8.795085e-02	ci left: 6.982348e-03	ci right 7.628295e-03	k: 1971	n:270000
Cons ci ratio: 2.127596e-02	ci left: 1.104957e-01	ci right 1.128756e-01	k: 30154	n:270000
KS ci ratio: 1.052526e-01	ci left: 4.842001e-03	ci right 5.383520e-03	k: 1379	n:270000
ZNF408   270000 perm   82 sec   (3298 perm/sec)   p_kst 5.107407e-03   p_cons 1.116815e-01   p_joint 7.300000e-03

Joint ci ratio: 8.611266e-02	ci left: 7.029950e-03	ci right 7.666025e-03	k: 2056	n:280000
Cons ci ratio: 2.090683e-02	ci left: 1.103826e-01	ci right 1.127183e-01	k: 31233	n:280000
KS ci ratio: 1.035056e-01	ci left: 4.832547e-03	ci right 5.363491e-03	k: 1426	n:280000
ZNF408   280000 perm   86 sec   (3256 perm/sec)   p_kst 5.092857e-03   p_cons 1.115464e-01   p_joint 7.342857e-03

Joint ci ratio: 8.508825e-02	ci left: 6.956250e-03	ci right 7.577796e-03	k: 2106	n:290000
Cons ci ratio: 2.053338e-02	ci left: 1.104974e-01	ci right 1.127932e-01	k: 32376	n:290000
KS ci ratio: 1.013943e-01	ci left: 4.867507e-03	ci right 5.390734e-03	k: 1486	n:290000
ZNF408   290000 perm   90 sec   (3214 perm/sec)   p_kst 5.124138e-03   p_cons 1.116414e-01   p_joint 7.262069e-03

Joint ci ratio: 8.871064e-02	ci left: 6.179690e-03	ci right 6.756573e-03	k: 1939	n:300000
Cons ci ratio: 2.018502e-02	ci left: 1.105484e-01	ci right 1.128058e-01	k: 33502	n:300000
KS ci ratio: 9.979694e-02	ci left: 4.861230e-03	ci right 5.375068e-03	k: 1534	n:300000
ZNF408   300000 perm   95 sec   (3173 perm/sec)   p_kst 5.113333e-03   p_cons 1.116733e-01   p_joint 6.463333e-03

Outputting figure to mutsig2_images.part000000000196/ZNF408.3_2215_300000_0.0051133_0.11167_0.0064633.png
                gene_name: ZNF408
               theta_stop: 0.100 
                    nperm: 300000 
                     p_ks: 0.0051 
        ci_ks_bounds_left: 0.0049 
       ci_ks_bounds_right: 0.0054 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.0065 
     ci_joint_bounds_left: 0.0062 
    ci_joint_bounds_right: 0.0068 

Current progress: 68 percent done.
ZNF259
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.147853e-02	ci left: 4.618753e-01	ci right 4.815412e-01	k: 4717	n:10000
Cons ci ratio: 5.628775e-02	ci left: 3.173107e-01	ci right 3.357904e-01	k: 3265	n:10000
KS ci ratio: 2.735360e-02	ci left: 6.632026e-01	ci right 6.816968e-01	k: 6725	n:10000
ZNF259   10000 perm   2 sec   (6601 perm/sec)   p_kst 6.725000e-01   p_cons 3.265000e-01   p_joint 4.717000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF259.2_1436_10000_0.6725_0.3265_0.4717.png
                gene_name: ZNF259
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 70 percent done.
ZNF263
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.783046e-02	ci left: 1.587554e-01	ci right 1.734397e-01	k: 1660	n:10000
Cons ci ratio: 9.850717e-02	ci left: 1.299255e-01	ci right 1.434869e-01	k: 1366	n:10000
KS ci ratio: 3.740117e-02	ci left: 5.135553e-01	ci right 5.332311e-01	k: 5234	n:10000
ZNF263   10000 perm   2 sec   (6388 perm/sec)   p_kst 5.234000e-01   p_cons 1.366000e-01   p_joint 1.660000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF263.2_2076_10000_0.5234_0.1366_0.166.png
                gene_name: ZNF263
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 72 percent done.
ZNF264
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.177474e-02	ci left: 7.557537e-01	ci right 7.724921e-01	k: 7642	n:10000
Cons ci ratio: 1.621032e-02	ci left: 8.469262e-01	ci right 8.608669e-01	k: 8540	n:10000
KS ci ratio: 2.856686e-02	ci left: 6.436774e-01	ci right 6.624334e-01	k: 6531	n:10000
ZNF264   10000 perm   2 sec   (6296 perm/sec)   p_kst 6.531000e-01   p_cons 8.540000e-01   p_joint 7.642000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF264.2_1900_10000_0.6531_0.854_0.7642.png
                gene_name: ZNF264
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 74 percent done.
ZNF276
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.330186e-01	ci left: 7.456177e-02	ci right 8.528446e-02	k: 798	n:10000
Cons ci ratio: 1.642256e-01	ci left: 4.945836e-02	ci right 5.840374e-02	k: 538	n:10000
KS ci ratio: 3.987402e-02	ci left: 4.815553e-01	ci right 5.012497e-01	k: 4914	n:10000
ZNF276   10000 perm   2 sec   (6307 perm/sec)   p_kst 4.914000e-01   p_cons 5.380000e-02   p_joint 7.980000e-02

Joint ci ratio: 9.441389e-02	ci left: 7.559155e-02	ci right 8.313128e-02	k: 1586	n:20000
Cons ci ratio: 1.138568e-01	ci left: 5.275592e-02	ci right 5.917394e-02	k: 1118	n:20000
KS ci ratio: 2.837561e-02	ci left: 4.812995e-01	ci right 4.952039e-01	k: 9765	n:20000
ZNF276   20000 perm   4 sec   (5610 perm/sec)   p_kst 4.882500e-01   p_cons 5.590000e-02   p_joint 7.930000e-02

Joint ci ratio: 8.345751e-02	ci left: 6.563413e-02	ci right 7.138311e-02	k: 2054	n:30000
Cons ci ratio: 9.242605e-02	ci left: 5.394633e-02	ci right 5.920663e-02	k: 1696	n:30000
KS ci ratio: 2.316533e-02	ci left: 4.826616e-01	ci right 4.940073e-01	k: 14650	n:30000
ZNF276   30000 perm   6 sec   (5332 perm/sec)   p_kst 4.883333e-01   p_cons 5.653333e-02   p_joint 6.846667e-02

Outputting figure to mutsig2_images.part000000000196/ZNF276.2_1889_30000_0.48833_0.056533_0.068467.png
                gene_name: ZNF276
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.057 
      ci_cons_bounds_left: 0.054 
     ci_cons_bounds_right: 0.059 
                  p_joint: 0.068 
     ci_joint_bounds_left: 0.066 
    ci_joint_bounds_right: 0.071 

Current progress: 75 percent done.
ZNF280C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.771017e-01	ci left: 4.255135e-02	ci right 5.091525e-02	k: 466	n:10000
Cons ci ratio: 6.868370e-03	ci left: 9.667828e-01	ci right 9.735397e-01	k: 9703	n:10000
KS ci ratio: 3.733977e-01	ci left: 8.867630e-03	ci right 1.302464e-02	k: 108	n:10000
ZNF280C   10000 perm   2 sec   (6119 perm/sec)   p_kst 1.080000e-02   p_cons 9.703000e-01   p_joint 4.660000e-02

Joint ci ratio: 3.758397e-02	ci left: 3.456268e-01	ci right 3.589162e-01	k: 7045	n:20000
Cons ci ratio: 4.936518e-03	ci left: 9.668150e-01	ci right 9.716473e-01	k: 19386	n:20000
KS ci ratio: 2.665217e-01	ci left: 9.273887e-03	ci right 1.217100e-02	k: 213	n:20000
ZNF280C   20000 perm   4 sec   (5418 perm/sec)   p_kst 1.065000e-02   p_cons 9.693000e-01   p_joint 3.522500e-01

Joint ci ratio: 9.049195e-02	ci left: 5.619672e-02	ci right 6.155577e-02	k: 1765	n:30000
Cons ci ratio: 4.040952e-03	ci left: 9.671135e-01	ci right 9.710616e-01	k: 29074	n:30000
KS ci ratio: 2.255632e-01	ci left: 8.842131e-03	ci right 1.112094e-02	k: 298	n:30000
ZNF280C   30000 perm   6 sec   (5164 perm/sec)   p_kst 9.933333e-03   p_cons 9.691333e-01   p_joint 5.883333e-02

Joint ci ratio: 8.104824e-02	ci left: 5.300639e-02	ci right 5.750845e-02	k: 2209	n:40000
Cons ci ratio: 3.451138e-03	ci left: 9.682299e-01	ci right 9.716014e-01	k: 38798	n:40000
KS ci ratio: 1.970149e-01	ci left: 8.834070e-03	ci right 1.078808e-02	k: 391	n:40000
ZNF280C   40000 perm   8 sec   (4998 perm/sec)   p_kst 9.775000e-03   p_cons 9.699500e-01   p_joint 5.522500e-02

Joint ci ratio: 2.941170e-02	ci left: 2.582691e-01	ci right 2.659986e-01	k: 13106	n:50000
Cons ci ratio: 3.067997e-03	ci left: 9.687745e-01	ci right 9.717706e-01	k: 48515	n:50000
KS ci ratio: 1.780601e-01	ci left: 8.744768e-03	ci right 1.047288e-02	k: 479	n:50000
ZNF280C   50000 perm   10 sec   (4871 perm/sec)   p_kst 9.580000e-03   p_cons 9.703000e-01   p_joint 2.621200e-01

Joint ci ratio: 2.751308e-02	ci left: 2.493095e-01	ci right 2.562811e-01	k: 15167	n:60000
Cons ci ratio: 2.803783e-03	ci left: 9.688422e-01	ci right 9.715787e-01	k: 58214	n:60000
KS ci ratio: 1.596335e-01	ci left: 9.155264e-03	ci right 1.075934e-02	k: 596	n:60000
ZNF280C   60000 perm   13 sec   (4757 perm/sec)   p_kst 9.933333e-03   p_cons 9.702333e-01   p_joint 2.527833e-01

Joint ci ratio: 3.538053e-02	ci left: 1.465539e-01	ci right 1.518466e-01	k: 10443	n:70000
Cons ci ratio: 2.601690e-03	ci left: 9.688115e-01	ci right 9.713493e-01	k: 67907	n:70000
KS ci ratio: 1.486023e-01	ci left: 9.111001e-03	ci right 1.058720e-02	k: 688	n:70000
ZNF280C   70000 perm   15 sec   (4646 perm/sec)   p_kst 9.828571e-03   p_cons 9.701000e-01   p_joint 1.491857e-01

Joint ci ratio: 2.168491e-02	ci left: 2.868571e-01	ci right 2.931582e-01	k: 23200	n:80000
Cons ci ratio: 2.446146e-03	ci left: 9.685907e-01	ci right 9.709751e-01	k: 77584	n:80000
KS ci ratio: 1.358537e-01	ci left: 9.599835e-03	ci right 1.101102e-02	k: 823	n:80000
ZNF280C   80000 perm   18 sec   (4542 perm/sec)   p_kst 1.028750e-02   p_cons 9.698000e-01   p_joint 2.900000e-01

Joint ci ratio: 2.260730e-02	ci left: 2.475721e-01	ci right 2.532440e-01	k: 22536	n:90000
Cons ci ratio: 2.303577e-03	ci left: 9.687290e-01	ci right 9.709739e-01	k: 87288	n:90000
KS ci ratio: 1.275983e-01	ci left: 9.715195e-03	ci right 1.104998e-02	k: 933	n:90000
ZNF280C   90000 perm   20 sec   (4443 perm/sec)   p_kst 1.036667e-02   p_cons 9.698667e-01   p_joint 2.504000e-01

Joint ci ratio: 2.595628e-02	ci left: 1.833039e-01	ci right 1.881343e-01	k: 18571	n:100000
Cons ci ratio: 2.181464e-03	ci left: 9.688935e-01	ci right 9.710192e-01	k: 96997	n:100000
KS ci ratio: 1.212737e-01	ci left: 9.712558e-03	ci right 1.097609e-02	k: 1033	n:100000
ZNF280C   100000 perm   23 sec   (4360 perm/sec)   p_kst 1.033000e-02   p_cons 9.699700e-01   p_joint 1.857100e-01

Joint ci ratio: 2.443250e-02	ci left: 1.873144e-01	ci right 1.919566e-01	k: 20859	n:110000
Cons ci ratio: 2.085330e-03	ci left: 9.687901e-01	ci right 9.708214e-01	k: 106680	n:110000
KS ci ratio: 1.161678e-01	ci left: 9.649932e-03	ci right 1.084883e-02	k: 1126	n:110000
ZNF280C   110000 perm   26 sec   (4276 perm/sec)   p_kst 1.023636e-02   p_cons 9.698182e-01   p_joint 1.896273e-01

Joint ci ratio: 2.301146e-02	ci left: 1.924878e-01	ci right 1.969770e-01	k: 23367	n:120000
Cons ci ratio: 1.995160e-03	ci left: 9.688754e-01	ci right 9.708185e-01	k: 116383	n:120000
KS ci ratio: 1.106533e-01	ci left: 9.776963e-03	ci right 1.093022e-02	k: 1241	n:120000
ZNF280C   120000 perm   29 sec   (4200 perm/sec)   p_kst 1.034167e-02   p_cons 9.698583e-01   p_joint 1.947250e-01

Joint ci ratio: 2.416546e-02	ci left: 1.663004e-01	ci right 1.703759e-01	k: 21883	n:130000
Cons ci ratio: 1.908681e-03	ci left: 9.691676e-01	ci right 9.710267e-01	k: 126114	n:130000
KS ci ratio: 1.059745e-01	ci left: 9.863115e-03	ci right 1.097427e-02	k: 1353	n:130000
ZNF280C   130000 perm   32 sec   (4126 perm/sec)   p_kst 1.040769e-02   p_cons 9.701077e-01   p_joint 1.683308e-01

Joint ci ratio: 2.158694e-02	ci left: 1.885739e-01	ci right 1.926961e-01	k: 26688	n:140000
Cons ci ratio: 1.841517e-03	ci left: 9.691293e-01	ci right 9.709226e-01	k: 135805	n:140000
KS ci ratio: 1.021605e-01	ci left: 9.875176e-03	ci right 1.094525e-02	k: 1456	n:140000
ZNF280C   140000 perm   34 sec   (4058 perm/sec)   p_kst 1.040000e-02   p_cons 9.700357e-01   p_joint 1.906286e-01

Joint ci ratio: 2.085828e-02	ci left: 1.885951e-01	ci right 1.925769e-01	k: 28587	n:150000
Cons ci ratio: 1.774642e-03	ci left: 9.693068e-01	ci right 9.710350e-01	k: 145527	n:150000
KS ci ratio: 9.847586e-02	ci left: 9.938283e-03	ci right 1.097410e-02	k: 1567	n:150000
ZNF280C   150000 perm   38 sec   (4000 perm/sec)   p_kst 1.044667e-02   p_cons 9.701800e-01   p_joint 1.905800e-01

Outputting figure to mutsig2_images.part000000000196/ZNF280C.2_2286_150000_0.010447_0.97018_0.19058.png
                gene_name: ZNF280C
               theta_stop: 0.098 
                    nperm: 150000 
                     p_ks: 0.010 
        ci_ks_bounds_left: 0.0099 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.19 

Current progress: 77 percent done.
ZNF281
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.827232e-02	ci left: 5.020507e-01	ci right 5.217424e-01	k: 5119	n:10000
Cons ci ratio: 4.299014e-02	ci left: 4.441065e-01	ci right 4.637203e-01	k: 4539	n:10000
KS ci ratio: 1.044753e-01	ci left: 1.169164e-01	ci right 1.299039e-01	k: 1233	n:10000
ZNF281   10000 perm   2 sec   (5922 perm/sec)   p_kst 1.233000e-01   p_cons 4.539000e-01   p_joint 5.119000e-01

Joint ci ratio: 2.939988e-02	ci left: 4.636122e-01	ci right 4.774963e-01	k: 9411	n:20000
Cons ci ratio: 3.039199e-02	ci left: 4.471319e-01	ci right 4.609815e-01	k: 9081	n:20000
KS ci ratio: 7.340230e-02	ci left: 1.202003e-01	ci right 1.294091e-01	k: 2495	n:20000
ZNF281   20000 perm   4 sec   (5294 perm/sec)   p_kst 1.247500e-01   p_cons 4.540500e-01   p_joint 4.705500e-01

Outputting figure to mutsig2_images.part000000000196/ZNF281.2_2692_20000_0.12475_0.45405_0.47055.png
                gene_name: ZNF281
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 79 percent done.
ZNF284
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.591471e-02	ci left: 2.024465e-01	ci right 2.185225e-01	k: 2104	n:10000
Cons ci ratio: 1.035678e-01	ci left: 1.187734e-01	ci right 1.318457e-01	k: 1252	n:10000
KS ci ratio: 9.588261e-02	ci left: 1.362914e-01	ci right 1.501172e-01	k: 1431	n:10000
ZNF284   10000 perm   2 sec   (6556 perm/sec)   p_kst 1.431000e-01   p_cons 1.252000e-01   p_joint 2.104000e-01

Joint ci ratio: 9.183013e-02	ci left: 7.965288e-02	ci right 8.736872e-02	k: 1669	n:20000
Cons ci ratio: 7.341911e-02	ci left: 1.201511e-01	ci right 1.293583e-01	k: 2494	n:20000
KS ci ratio: 6.817588e-02	ci left: 1.369927e-01	ci right 1.467117e-01	k: 2836	n:20000
ZNF284   20000 perm   3 sec   (5768 perm/sec)   p_kst 1.418000e-01   p_cons 1.247000e-01   p_joint 8.345000e-02

Outputting figure to mutsig2_images.part000000000196/ZNF284.2_1798_20000_0.1418_0.1247_0.08345.png
                gene_name: ZNF284
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.083 
     ci_joint_bounds_left: 0.080 
    ci_joint_bounds_right: 0.087 

Current progress: 81 percent done.
ZNF296
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.794962e-02	ci left: 2.411415e-01	ci right 2.582045e-01	k: 2496	n:10000
Cons ci ratio: 8.856681e-02	ci left: 1.564968e-01	ci right 1.710996e-01	k: 1637	n:10000
KS ci ratio: 8.639973e-02	ci left: 1.632741e-01	ci right 1.781182e-01	k: 1706	n:10000
ZNF296   10000 perm   2 sec   (6521 perm/sec)   p_kst 1.706000e-01   p_cons 1.637000e-01   p_joint 2.496000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF296.2_1440_10000_0.1706_0.1637_0.2496.png
                gene_name: ZNF296
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 82 percent done.
ZNF30
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.750059e-03	ci left: 9.936409e-01	ci right 9.964588e-01	k: 9952	n:10000
Cons ci ratio: 1.816794e-02	ci left: 8.155790e-01	ci right 8.306323e-01	k: 8232	n:10000
KS ci ratio: 1.735119e-02	ci left: 8.287986e-01	ci right 8.434050e-01	k: 8362	n:10000
ZNF30   10000 perm   2 sec   (6192 perm/sec)   p_kst 8.362000e-01   p_cons 8.232000e-01   p_joint 9.952000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF30.2_1891_10000_0.8362_0.8232_0.9952.png
                gene_name: ZNF30
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1.00 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 1.00 

Current progress: 84 percent done.
ZNF302
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.987856e-02	ci left: 2.909285e-01	ci right 3.089882e-01	k: 2999	n:10000
Cons ci ratio: 1.952724e-02	ci left: 7.932406e-01	ci right 8.089836e-01	k: 8012	n:10000
KS ci ratio: 2.073636e-01	ci left: 3.091404e-02	ci right 3.816041e-02	k: 344	n:10000
ZNF302   10000 perm   1 sec   (6908 perm/sec)   p_kst 3.440000e-02   p_cons 8.012000e-01   p_joint 2.999000e-01

Joint ci ratio: 4.505691e-02	ci left: 2.683234e-01	ci right 2.807422e-01	k: 5490	n:20000
Cons ci ratio: 1.360358e-02	ci left: 8.003494e-01	ci right 8.113616e-01	k: 16118	n:20000
KS ci ratio: 1.451137e-01	ci left: 3.264050e-02	ci right 3.779577e-02	k: 703	n:20000
ZNF302   20000 perm   3 sec   (6068 perm/sec)   p_kst 3.515000e-02   p_cons 8.059000e-01   p_joint 2.745000e-01

Joint ci ratio: 3.676274e-02	ci left: 2.697538e-01	ci right 2.798899e-01	k: 8244	n:30000
Cons ci ratio: 1.113322e-02	ci left: 8.006386e-01	ci right 8.096355e-01	k: 24155	n:30000
KS ci ratio: 1.191894e-01	ci left: 3.272222e-02	ci right 3.690183e-02	k: 1043	n:30000
ZNF302   30000 perm   5 sec   (5749 perm/sec)   p_kst 3.476667e-02   p_cons 8.051667e-01   p_joint 2.748000e-01

Joint ci ratio: 3.188616e-02	ci left: 2.698322e-01	ci right 2.786006e-01	k: 10968	n:40000
Cons ci ratio: 9.701234e-03	ci left: 7.992945e-01	ci right 8.071114e-01	k: 32129	n:40000
KS ci ratio: 1.039980e-01	ci left: 3.251345e-02	ci right 3.610457e-02	k: 1371	n:40000
ZNF302   40000 perm   7 sec   (5537 perm/sec)   p_kst 3.427500e-02   p_cons 8.032250e-01   p_joint 2.742000e-01

Joint ci ratio: 2.856328e-02	ci left: 2.696956e-01	ci right 2.775307e-01	k: 13680	n:50000
Cons ci ratio: 8.711186e-03	ci left: 7.984595e-01	ci right 8.054654e-01	k: 40099	n:50000
KS ci ratio: 9.293474e-02	ci left: 3.276093e-02	ci right 3.597343e-02	k: 1717	n:50000
ZNF302   50000 perm   9 sec   (5364 perm/sec)   p_kst 3.434000e-02   p_cons 8.019800e-01   p_joint 2.736000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF302.2_1216_50000_0.03434_0.80198_0.2736.png
                gene_name: ZNF302
               theta_stop: 0.093 
                    nperm: 50000 
                     p_ks: 0.034 
        ci_ks_bounds_left: 0.033 
       ci_ks_bounds_right: 0.036 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 86 percent done.
ZNF317
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.289722e-02	ci left: 7.369431e-01	ci right 7.541136e-01	k: 7456	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
ZNF317   10000 perm   2 sec   (6223 perm/sec)   p_kst 1   p_cons 7.456000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000196/ZNF317.2_1812_10000_1_0.7456_1.png
                gene_name: ZNF317
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
ZNF319
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.945362e-02	ci left: 2.939022e-01	ci right 3.120127e-01	k: 3029	n:10000
Cons ci ratio: 1.100425e-01	ci left: 1.063704e-01	ci right 1.188563e-01	k: 1125	n:10000
KS ci ratio: 1.495415e-02	ci left: 8.663151e-01	ci right 8.794668e-01	k: 8730	n:10000
ZNF319   10000 perm   2 sec   (6262 perm/sec)   p_kst 8.730000e-01   p_cons 1.125000e-01   p_joint 3.029000e-01

Joint ci ratio: 3.354520e-02	ci left: 3.988840e-01	ci right 4.125435e-01	k: 8114	n:20000
Cons ci ratio: 7.653606e-02	ci left: 1.114947e-01	ci right 1.204173e-01	k: 2318	n:20000
KS ci ratio: 1.053025e-02	ci left: 8.692199e-01	ci right 8.784711e-01	k: 17478	n:20000
ZNF319   20000 perm   4 sec   (5532 perm/sec)   p_kst 8.739000e-01   p_cons 1.159000e-01   p_joint 4.057000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF319.2_1753_20000_0.8739_0.1159_0.4057.png
                gene_name: ZNF319
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.41 

Current progress: 89 percent done.
ZNF326
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.732256e-02	ci left: 6.637061e-01	ci right 6.821931e-01	k: 6730	n:10000
KS ci ratio: 2.196193e-02	ci left: 7.526172e-01	ci right 7.694305e-01	k: 7611	n:10000
ZNF326   10000 perm   2 sec   (6593 perm/sec)   p_kst 7.611000e-01   p_cons 6.730000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000196/ZNF326.2_1801_10000_0.7611_0.673_1.png
                gene_name: ZNF326
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
ZNF329
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.488330e-02	ci left: 2.586449e-01	ci right 2.760908e-01	k: 2673	n:10000
Cons ci ratio: 5.811568e-02	ci left: 3.035202e-01	ci right 3.217891e-01	k: 3126	n:10000
KS ci ratio: 1.306344e-01	ci left: 7.717981e-02	ci right 8.806479e-02	k: 825	n:10000
ZNF329   10000 perm   2 sec   (6652 perm/sec)   p_kst 8.250000e-02   p_cons 3.126000e-01   p_joint 2.673000e-01

Joint ci ratio: 5.231376e-02	ci left: 2.134331e-01	ci right 2.249487e-01	k: 4383	n:20000
Cons ci ratio: 4.265018e-02	ci left: 2.905728e-01	ci right 3.032863e-01	k: 5938	n:20000
KS ci ratio: 9.274202e-02	ci left: 7.818459e-02	ci right 8.583745e-02	k: 1639	n:20000
ZNF329   20000 perm   3 sec   (5835 perm/sec)   p_kst 8.195000e-02   p_cons 2.969000e-01   p_joint 2.191500e-01

Outputting figure to mutsig2_images.part000000000196/ZNF329.2_1630_20000_0.08195_0.2969_0.21915.png
                gene_name: ZNF329
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.082 
        ci_ks_bounds_left: 0.078 
       ci_ks_bounds_right: 0.086 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 93 percent done.
ZNF333
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.140372e-02	ci left: 4.627741e-01	ci right 4.824419e-01	k: 4726	n:10000
Cons ci ratio: 2.205248e-02	ci left: 7.510997e-01	ci right 7.679489e-01	k: 7596	n:10000
KS ci ratio: 1.110452e-01	ci left: 1.046144e-01	ci right 1.170133e-01	k: 1107	n:10000
ZNF333   10000 perm   2 sec   (6231 perm/sec)   p_kst 1.107000e-01   p_cons 7.596000e-01   p_joint 4.726000e-01

Joint ci ratio: 1.833152e-02	ci left: 6.892702e-01	ci right 7.020729e-01	k: 13914	n:20000
Cons ci ratio: 1.637233e-02	ci left: 7.352214e-01	ci right 7.474083e-01	k: 14827	n:20000
KS ci ratio: 7.808702e-02	ci left: 1.075135e-01	ci right 1.162997e-01	k: 2237	n:20000
ZNF333   20000 perm   4 sec   (5532 perm/sec)   p_kst 1.118500e-01   p_cons 7.413500e-01   p_joint 6.957000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF333.2_2042_20000_0.11185_0.74135_0.6957.png
                gene_name: ZNF333
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.70 

Current progress: 95 percent done.
ZNF34
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.692583e-03	ci left: 9.591130e-01	ci right 9.666143e-01	k: 9630	n:10000
KS ci ratio: 3.289058e-02	ci left: 5.770748e-01	ci right 5.964746e-01	k: 5868	n:10000
ZNF34   10000 perm   2 sec   (6396 perm/sec)   p_kst 5.868000e-01   p_cons 9.630000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000196/ZNF34.2_1703_10000_0.5868_0.963_1.png
                gene_name: ZNF34
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
ZNF365
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.750921e-02	ci left: 8.262552e-01	ci right 8.409500e-01	k: 8337	n:10000
Cons ci ratio: 5.681654e-02	ci left: 3.132420e-01	ci right 3.316615e-01	k: 3224	n:10000
KS ci ratio: 2.990320e-02	ci left: 6.225610e-01	ci right 6.415620e-01	k: 6321	n:10000
ZNF365   10000 perm   2 sec   (6182 perm/sec)   p_kst 6.321000e-01   p_cons 3.224000e-01   p_joint 8.337000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF365.2_2153_10000_0.6321_0.3224_0.8337.png
                gene_name: ZNF365
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 98 percent done.
ZNF382
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.768106e-02	ci left: 1.318837e-01	ci right 1.455275e-01	k: 1386	n:10000
Cons ci ratio: 1.640648e-01	ci left: 4.955445e-02	ci right 5.850759e-02	k: 539	n:10000
KS ci ratio: 6.486675e-02	ci left: 2.587439e-01	ci right 2.761918e-01	k: 2674	n:10000
ZNF382   10000 perm   2 sec   (6407 perm/sec)   p_kst 2.674000e-01   p_cons 5.390000e-02   p_joint 1.386000e-01

Joint ci ratio: 9.552987e-02	ci left: 7.392873e-02	ci right 8.139460e-02	k: 1552	n:20000
Cons ci ratio: 1.101510e-01	ci left: 5.626075e-02	ci right 6.286802e-02	k: 1190	n:20000
KS ci ratio: 4.518734e-02	ci left: 2.671816e-01	ci right 2.795843e-01	k: 5467	n:20000
ZNF382   20000 perm   4 sec   (5661 perm/sec)   p_kst 2.733500e-01   p_cons 5.950000e-02   p_joint 7.760000e-02

Joint ci ratio: 8.108899e-02	ci left: 6.932881e-02	ci right 7.522101e-02	k: 2167	n:30000
Cons ci ratio: 9.262872e-02	ci left: 5.371809e-02	ci right 5.896824e-02	k: 1689	n:30000
KS ci ratio: 3.705390e-02	ci left: 2.666388e-01	ci right 2.767388e-01	k: 8150	n:30000
ZNF382   30000 perm   6 sec   (5359 perm/sec)   p_kst 2.716667e-01   p_cons 5.630000e-02   p_joint 7.223333e-02

Outputting figure to mutsig2_images.part000000000196/ZNF382.2_1665_30000_0.27167_0.0563_0.072233.png
                gene_name: ZNF382
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.056 
      ci_cons_bounds_left: 0.054 
     ci_cons_bounds_right: 0.059 
                  p_joint: 0.072 
     ci_joint_bounds_left: 0.069 
    ci_joint_bounds_right: 0.075 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000196
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 196 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1724>
Subject: Job 8004717: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1724>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000197> was used as the working directory.
Started at Sun Nov 11 15:26:51 2012
Results reported at Sun Nov 11 15:57:17 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000197.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000197.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 197  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000197.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1841.85 sec.
    Max Memory :      4803 MB
    Max Swap   :      7105 MB

    Max Processes  :         7
    Max Threads    :        74

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
197
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 197
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 197: processing genes 17733 - 17823
Calculating significance of each gene.
Using projection method.
17733	ZNF410	3.627148e-01
17734	ZNF414	1.071565e-01
17735	ZNF415	3.576365e-02
17736	ZNF416	7.324821e-01
17737	ZNF417	4.712291e-01
17738	ZNF418	7.941925e-01
17739	ZNF419	1
17740	ZNF420	5.282393e-01
17741	ZNF423	5.383611e-02
17742	ZNF425	1.799953e-02
17743	ZNF426	8.552641e-01
17744	ZNF428	1
17745	ZNF429	1.710875e-01
17746	ZNF43	3.180893e-01
17747	ZNF430	7.380693e-01
17748	ZNF431	4.702992e-02
17749	ZNF432	8.457654e-01
17750	ZNF433	9.090866e-01
17751	ZNF434	7.684182e-02
17752	ZNF436	3.169511e-01
17753	ZNF438	1.694065e-01
17754	ZNF439	6.549348e-01
17755	ZNF44	2.106086e-01
17756	ZNF440	2.659336e-01
17757	ZNF441	5.026257e-01
17758	ZNF442	7.053760e-02
17759	ZNF443	9.126428e-02
17760	ZNF445	8.630738e-01
17761	ZNF446	4.046799e-01
17762	ZNF449	2.796163e-01
17763	ZNF45	9.019797e-01
17764	ZNF451	4.491523e-01
17765	ZNF454	6.733444e-02
17766	ZNF460	3.629927e-01
17767	ZNF461	2.745059e-03
17768	ZNF462	1
17769	ZNF467	1.058527e-01
17770	ZNF468	3.475680e-01
17771	ZNF470	1.907041e-01
17772	ZNF471	5.018889e-01
17773	ZNF473	7.729649e-01
17774	ZNF474	7.479006e-01
17775	ZNF479	8.270939e-02
17776	ZNF48	4.620691e-01
17777	ZNF480	8.408317e-01
17778	ZNF483	3.285106e-01
17779	ZNF484	9.520132e-01
17780	ZNF485	5.331405e-01
17781	ZNF486	1
17782	ZNF488	2.971728e-01
17783	ZNF490	7.689169e-01
17784	ZNF491	4.424859e-01
17785	ZNF492	2.818157e-01
17786	ZNF493	1.707307e-01
17787	ZNF496	4.066739e-02
17788	ZNF497	6.566815e-01
17789	ZNF498	2.743548e-01
17790	ZNF500	5.833658e-01
17791	ZNF501	6.701622e-01
17792	ZNF502	4.128104e-01
17793	ZNF503	1
17794	ZNF506	3.548960e-01
17795	ZNF507	7.772710e-01
17796	ZNF510	8.360452e-01
17797	ZNF511	1
17798	ZNF512	3.553716e-01
17799	ZNF512B	9.127565e-01
17800	ZNF513	3.454496e-01
17801	ZNF514	4.818614e-01
17802	ZNF516	4.243654e-01
17803	ZNF517	8.329997e-01
17804	ZNF518A	9.390366e-01
17805	ZNF518B	3.807936e-01
17806	ZNF519	1.400613e-02
17807	ZNF521	1
17808	ZNF524	1
17809	ZNF526	8.496599e-01
17810	ZNF527	2.322939e-03
17811	ZNF528	1.756698e-01
17812	ZNF529	7.041319e-01
17813	ZNF530	7.429997e-01
17814	ZNF532	7.227203e-01
17815	ZNF534	2.008529e-02
17816	ZNF536	1
17817	ZNF540	8.462017e-02
17818	ZNF543	3.770594e-01
17819	ZNF544	6.591413e-01
17820	ZNF546	8.963510e-01
17821	ZNF547	8.173318e-01
17822	ZNF548	1.620925e-02
17823	ZNF549	8.093666e-01
Done

Running MutSig 2:
Scatter job 197: processing genes 17733 - 17823
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ZNF536
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.353171e-02	ci left: 4.379204e-01	ci right 4.575101e-01	k: 4477	n:10000
Cons ci ratio: 3.815763e-02	ci left: 5.035510e-01	ci right 5.232412e-01	k: 5134	n:10000
KS ci ratio: 5.051047e-02	ci left: 3.662946e-01	ci right 3.853777e-01	k: 3758	n:10000
ZNF536   10000 perm   2 sec   (4002 perm/sec)   p_kst 3.758000e-01   p_cons 5.134000e-01   p_joint 4.477000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF536.34_3919_10000_0.3758_0.5134_0.4477.png
                gene_name: ZNF536
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 1 percent done.
ZNF423
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.398202e-02	ci left: 2.110256e-01	ci right 2.273383e-01	k: 2191	n:10000
Cons ci ratio: 4.571844e-02	ci left: 4.138887e-01	ci right 4.333558e-01	k: 4236	n:10000
KS ci ratio: 8.726408e-02	ci left: 1.605234e-01	ci right 1.752706e-01	k: 1678	n:10000
ZNF423   10000 perm   2 sec   (4832 perm/sec)   p_kst 1.678000e-01   p_cons 4.236000e-01   p_joint 2.191000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF423.16_3887_10000_0.1678_0.4236_0.2191.png
                gene_name: ZNF423
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 3 percent done.
ZNF521
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.619830e-02	ci left: 3.180054e-01	ci right 3.364953e-01	k: 3272	n:10000
Cons ci ratio: 7.336085e-02	ci left: 2.138864e-01	ci right 2.302758e-01	k: 2220	n:10000
KS ci ratio: 6.950796e-02	ci left: 2.328414e-01	ci right 2.497096e-01	k: 2412	n:10000
ZNF521   10000 perm   2 sec   (4787 perm/sec)   p_kst 2.412000e-01   p_cons 2.220000e-01   p_joint 3.272000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF521.15_3964_10000_0.2412_0.222_0.3272.png
                gene_name: ZNF521
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 4 percent done.
ZNF479
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.690602e-02	ci left: 8.359236e-01	ci right 8.502760e-01	k: 8432	n:10000
KS ci ratio: 2.525240e-02	ci left: 6.976675e-01	ci right 7.156120e-01	k: 7067	n:10000
ZNF479   10000 perm   2 sec   (5111 perm/sec)   p_kst 7.067000e-01   p_cons 8.432000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000197/ZNF479.14_1591_10000_0.7067_0.8432_1.png
                gene_name: ZNF479
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 6 percent done.
ZNF527
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.991605e-02	ci left: 6.223600e-01	ci right 6.413631e-01	k: 6319	n:10000
Cons ci ratio: 5.268928e-02	ci left: 3.468072e-01	ci right 3.656766e-01	k: 3562	n:10000
KS ci ratio: 1.155646e-02	ci left: 9.146125e-01	ci right 9.253413e-01	k: 9201	n:10000
ZNF527   10000 perm   2 sec   (5850 perm/sec)   p_kst 9.201000e-01   p_cons 3.562000e-01   p_joint 6.319000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF527.9_1846_10000_0.9201_0.3562_0.6319.png
                gene_name: ZNF527
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 7 percent done.
ZNF425
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.237935e-02	ci left: 2.741854e-01	ci right 2.919411e-01	k: 2830	n:10000
Cons ci ratio: 1.005180e-01	ci left: 1.253257e-01	ci right 1.386894e-01	k: 1319	n:10000
KS ci ratio: 3.990594e-02	ci left: 4.811556e-01	ci right 5.008497e-01	k: 4910	n:10000
ZNF425   10000 perm   2 sec   (5667 perm/sec)   p_kst 4.910000e-01   p_cons 1.319000e-01   p_joint 2.830000e-01

Joint ci ratio: 5.021331e-02	ci left: 2.276509e-01	ci right 2.394267e-01	k: 4670	n:20000
Cons ci ratio: 6.803621e-02	ci left: 1.374855e-01	ci right 1.472187e-01	k: 2846	n:20000
KS ci ratio: 2.843245e-02	ci left: 4.803000e-01	ci right 4.942037e-01	k: 9745	n:20000
ZNF425   20000 perm   4 sec   (5251 perm/sec)   p_kst 4.872500e-01   p_cons 1.423000e-01   p_joint 2.335000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF425.8_2275_20000_0.48725_0.1423_0.2335.png
                gene_name: ZNF425
               theta_stop: 0.068 
                    nperm: 20000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 9 percent done.
ZNF461
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.341025e-02	ci left: 7.283538e-01	ci right 7.457079e-01	k: 7371	n:10000
Cons ci ratio: 4.888187e-02	ci left: 3.817174e-01	ci right 4.009460e-01	k: 3913	n:10000
KS ci ratio: 9.635105e-03	ci left: 9.383791e-01	ci right 9.475607e-01	k: 9431	n:10000
ZNF461   10000 perm   2 sec   (5411 perm/sec)   p_kst 9.431000e-01   p_cons 3.913000e-01   p_joint 7.371000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF461.8_1712_10000_0.9431_0.3913_0.7371.png
                gene_name: ZNF461
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 10 percent done.
ZNF462
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.678422e-02	ci left: 6.724682e-01	ci right 6.908258e-01	k: 6817	n:10000
Cons ci ratio: 6.461939e-02	ci left: 2.602281e-01	ci right 2.777067e-01	k: 2689	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
ZNF462   10000 perm   2 sec   (4257 perm/sec)   p_kst 1   p_cons 2.689000e-01   p_joint 6.817000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF462.8_7569_10000_1_0.2689_0.6817.png
                gene_name: ZNF462
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 12 percent done.
ZNF415
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.396839e-01	ci left: 6.787957e-02	ci right 7.817082e-02	k: 729	n:10000
Cons ci ratio: 1.171404e-01	ci left: 9.477139e-02	ci right 1.066624e-01	k: 1006	n:10000
KS ci ratio: 1.061502e-01	ci left: 1.135945e-01	ci right 1.264278e-01	k: 1199	n:10000
ZNF415   10000 perm   2 sec   (6058 perm/sec)   p_kst 1.199000e-01   p_cons 1.006000e-01   p_joint 7.290000e-02

Joint ci ratio: 9.396444e-02	ci left: 7.627639e-02	ci right 8.384623e-02	k: 1600	n:20000
Cons ci ratio: 8.663852e-02	ci left: 8.881317e-02	ci right 9.690565e-02	k: 1856	n:20000
KS ci ratio: 7.416821e-02	ci left: 1.179862e-01	ci right 1.271238e-01	k: 2450	n:20000
ZNF415   20000 perm   4 sec   (5489 perm/sec)   p_kst 1.225000e-01   p_cons 9.280000e-02   p_joint 8.000000e-02

Outputting figure to mutsig2_images.part000000000197/ZNF415.6_1699_20000_0.1225_0.0928_0.08.png
                gene_name: ZNF415
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.093 
      ci_cons_bounds_left: 0.089 
     ci_cons_bounds_right: 0.097 
                  p_joint: 0.080 
     ci_joint_bounds_left: 0.076 
    ci_joint_bounds_right: 0.084 

Current progress: 13 percent done.
ZNF438
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.891299e-02	ci left: 4.937506e-01	ci right 5.134473e-01	k: 5036	n:10000
Cons ci ratio: 6.267260e-02	ci left: 2.723040e-01	ci right 2.900236e-01	k: 2811	n:10000
KS ci ratio: 2.455362e-02	ci left: 7.092699e-01	ci right 7.270028e-01	k: 7182	n:10000
ZNF438   10000 perm   2 sec   (5522 perm/sec)   p_kst 7.182000e-01   p_cons 2.811000e-01   p_joint 5.036000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF438.6_2510_10000_0.7182_0.2811_0.5036.png
                gene_name: ZNF438
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 14 percent done.
ZNF483
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.416588e-02	ci left: 7.157300e-01	ci right 7.333390e-01	k: 7246	n:10000
Cons ci ratio: 6.553540e-02	ci left: 2.547867e-01	ci right 2.721513e-01	k: 2634	n:10000
KS ci ratio: 9.224974e-03	ci left: 9.430505e-01	ci right 9.518865e-01	k: 9476	n:10000
ZNF483   10000 perm   2 sec   (5919 perm/sec)   p_kst 9.476000e-01   p_cons 2.634000e-01   p_joint 7.246000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF483.6_2309_10000_0.9476_0.2634_0.7246.png
                gene_name: ZNF483
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 16 percent done.
ZNF496
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.776603e-02	ci left: 3.060990e-01	ci right 3.244087e-01	k: 3152	n:10000
Cons ci ratio: 3.542450e-02	ci left: 5.405866e-01	ci right 5.601840e-01	k: 5504	n:10000
KS ci ratio: 7.519138e-02	ci left: 2.056014e-01	ci right 2.217657e-01	k: 2136	n:10000
ZNF496   10000 perm   2 sec   (6063 perm/sec)   p_kst 2.136000e-01   p_cons 5.504000e-01   p_joint 3.152000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF496.6_1792_10000_0.2136_0.5504_0.3152.png
                gene_name: ZNF496
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 17 percent done.
ZNF516
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.305359e-02	ci left: 5.746674e-01	ci right 5.940834e-01	k: 5844	n:10000
Cons ci ratio: 1.991862e-02	ci left: 7.867494e-01	ci right 8.026785e-01	k: 7948	n:10000
KS ci ratio: 7.510200e-02	ci left: 2.059958e-01	ci right 2.221711e-01	k: 2140	n:10000
ZNF516   10000 perm   2 sec   (4606 perm/sec)   p_kst 2.140000e-01   p_cons 7.948000e-01   p_joint 5.844000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF516.6_3513_10000_0.214_0.7948_0.5844.png
                gene_name: ZNF516
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 19 percent done.
ZNF519
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.722167e-02	ci left: 5.159569e-01	ci right 5.356281e-01	k: 5258	n:10000
Cons ci ratio: 6.174011e-02	ci left: 2.783450e-01	ci right 2.961790e-01	k: 2872	n:10000
KS ci ratio: 2.724812e-02	ci left: 6.649144e-01	ci right 6.833840e-01	k: 6742	n:10000
ZNF519   10000 perm   2 sec   (5578 perm/sec)   p_kst 6.742000e-01   p_cons 2.872000e-01   p_joint 5.258000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF519.6_1635_10000_0.6742_0.2872_0.5258.png
                gene_name: ZNF519
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 20 percent done.
ZNF534
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.985870e-01	ci left: 3.376644e-02	ci right 4.130605e-02	k: 374	n:10000
Cons ci ratio: 1.622331e-02	ci left: 8.467224e-01	ci right 8.606709e-01	k: 8538	n:10000
KS ci ratio: 6.521239e-01	ci left: 2.439052e-03	ci right 4.864323e-03	k: 35	n:10000
ZNF534   10000 perm   2 sec   (5511 perm/sec)   p_kst 3.500000e-03   p_cons 8.538000e-01   p_joint 3.740000e-02

Joint ci ratio: 2.369421e-01	ci left: 1.189959e-02	ci right 1.514412e-02	k: 269	n:20000
Cons ci ratio: 1.145477e-02	ci left: 8.491819e-01	ci right 8.590149e-01	k: 17083	n:20000
KS ci ratio: 4.930829e-01	ci left: 2.377553e-03	ci right 3.972323e-03	k: 62	n:20000
ZNF534   20000 perm   4 sec   (5076 perm/sec)   p_kst 3.100000e-03   p_cons 8.541500e-01   p_joint 1.345000e-02

Joint ci ratio: 1.335894e-01	ci left: 2.603335e-02	ci right 2.979216e-02	k: 836	n:30000
Cons ci ratio: 9.326911e-03	ci left: 8.507961e-01	ci right 8.588017e-01	k: 25645	n:30000
KS ci ratio: 3.953260e-01	ci left: 2.622774e-03	ci right 3.942989e-03	k: 97	n:30000
ZNF534   30000 perm   6 sec   (4881 perm/sec)   p_kst 3.233333e-03   p_cons 8.548333e-01   p_joint 2.786667e-02

Joint ci ratio: 1.115929e-01	ci left: 2.825267e-02	ci right 3.161603e-02	k: 1196	n:40000
Cons ci ratio: 8.321695e-03	ci left: 8.437121e-01	ci right 8.507874e-01	k: 33891	n:40000
KS ci ratio: 3.216214e-01	ci left: 3.105786e-03	ci right 4.318021e-03	k: 147	n:40000
ZNF534   40000 perm   8 sec   (4778 perm/sec)   p_kst 3.675000e-03   p_cons 8.472750e-01   p_joint 2.990000e-02

Joint ci ratio: 9.327260e-02	ci left: 3.252633e-02	ci right 3.572806e-02	k: 1705	n:50000
Cons ci ratio: 7.464805e-03	ci left: 8.433305e-01	ci right 8.496692e-01	k: 42326	n:50000
KS ci ratio: 2.932901e-01	ci left: 3.038414e-03	ci right 4.100509e-03	k: 177	n:50000
ZNF534   50000 perm   11 sec   (4671 perm/sec)   p_kst 3.540000e-03   p_cons 8.465200e-01   p_joint 3.410000e-02

Joint ci ratio: 1.347907e-01	ci left: 1.296234e-02	ci right 1.485178e-02	k: 833	n:60000
Cons ci ratio: 6.833684e-03	ci left: 8.428685e-01	ci right 8.486647e-01	k: 50747	n:60000
KS ci ratio: 2.795400e-01	ci left: 2.810424e-03	ci right 3.738651e-03	k: 195	n:60000
ZNF534   60000 perm   13 sec   (4588 perm/sec)   p_kst 3.250000e-03   p_cons 8.457833e-01   p_joint 1.388333e-02

Joint ci ratio: 1.393927e-01	ci left: 1.039221e-02	ci right 1.196299e-02	k: 781	n:70000
Cons ci ratio: 6.325301e-03	ci left: 8.431464e-01	ci right 8.485106e-01	k: 59209	n:70000
KS ci ratio: 2.580503e-01	ci left: 2.861975e-03	ci right 3.722870e-03	k: 229	n:70000
ZNF534   70000 perm   16 sec   (4509 perm/sec)   p_kst 3.271429e-03   p_cons 8.458429e-01   p_joint 1.115714e-02

Joint ci ratio: 1.317927e-01	ci left: 1.021620e-02	ci right 1.166959e-02	k: 874	n:80000
Cons ci ratio: 5.937008e-03	ci left: 8.424231e-01	ci right 8.474519e-01	k: 67596	n:80000
KS ci ratio: 2.441283e-01	ci left: 2.820496e-03	ci right 3.616205e-03	k: 256	n:80000
ZNF534   80000 perm   18 sec   (4429 perm/sec)   p_kst 3.200000e-03   p_cons 8.449500e-01   p_joint 1.092500e-02

Joint ci ratio: 1.017196e-01	ci left: 1.540695e-02	ci right 1.706889e-02	k: 1460	n:90000
Cons ci ratio: 5.599236e-03	ci left: 8.424848e-01	ci right 8.472263e-01	k: 76038	n:90000
KS ci ratio: 2.306171e-01	ci left: 2.831083e-03	ci right 3.579283e-03	k: 287	n:90000
ZNF534   90000 perm   21 sec   (4363 perm/sec)   p_kst 3.188889e-03   p_cons 8.448667e-01   p_joint 1.622222e-02

Joint ci ratio: 1.007588e-01	ci left: 1.415820e-02	ci right 1.567013e-02	k: 1490	n:100000
Cons ci ratio: 5.312638e-03	ci left: 8.425709e-01	ci right 8.470690e-01	k: 84483	n:100000
KS ci ratio: 2.201674e-01	ci left: 2.812169e-03	ci right 3.517136e-03	k: 315	n:100000
ZNF534   100000 perm   23 sec   (4298 perm/sec)   p_kst 3.150000e-03   p_cons 8.448300e-01   p_joint 1.490000e-02

Joint ci ratio: 9.667293e-02	ci left: 1.401481e-02	ci right 1.544730e-02	k: 1619	n:110000
Cons ci ratio: 5.060706e-03	ci left: 8.429208e-01	ci right 8.472064e-01	k: 92958	n:110000
KS ci ratio: 2.104079e-01	ci left: 2.814546e-03	ci right 3.484802e-03	k: 345	n:110000
ZNF534   110000 perm   26 sec   (4225 perm/sec)   p_kst 3.136364e-03   p_cons 8.450727e-01   p_joint 1.471818e-02

Joint ci ratio: 9.908459e-02	ci left: 1.223665e-02	ci right 1.352039e-02	k: 1544	n:120000
Cons ci ratio: 4.839813e-03	ci left: 8.433085e-01	ci right 8.474081e-01	k: 101444	n:120000
KS ci ratio: 2.013044e-01	ci left: 2.832928e-03	ci right 3.474788e-03	k: 377	n:120000
ZNF534   120000 perm   29 sec   (4164 perm/sec)   p_kst 3.141667e-03   p_cons 8.453667e-01   p_joint 1.286667e-02

Joint ci ratio: 9.721032e-02	ci left: 1.175294e-02	ci right 1.296127e-02	k: 1605	n:130000
Cons ci ratio: 4.657005e-03	ci left: 8.429902e-01	ci right 8.469328e-01	k: 109846	n:130000
KS ci ratio: 1.940020e-01	ci left: 2.827049e-03	ci right 3.441599e-03	k: 406	n:130000
ZNF534   130000 perm   32 sec   (4106 perm/sec)   p_kst 3.123077e-03   p_cons 8.449692e-01   p_joint 1.234615e-02

Joint ci ratio: 1.064919e-01	ci left: 9.074972e-03	ci right 1.010264e-02	k: 1341	n:140000
Cons ci ratio: 4.490987e-03	ci left: 8.428638e-01	ci right 8.466647e-01	k: 118268	n:140000
KS ci ratio: 1.891898e-01	ci left: 2.767915e-03	ci right 3.352968e-03	k: 427	n:140000
ZNF534   140000 perm   35 sec   (4049 perm/sec)   p_kst 3.050000e-03   p_cons 8.447714e-01   p_joint 9.578571e-03

Joint ci ratio: 1.043136e-01	ci left: 8.839900e-03	ci right 9.819207e-03	k: 1398	n:150000
Cons ci ratio: 4.340656e-03	ci left: 8.428102e-01	ci right 8.464831e-01	k: 126698	n:150000
KS ci ratio: 1.813076e-01	ci left: 2.824984e-03	ci right 3.394491e-03	k: 465	n:150000
ZNF534   150000 perm   38 sec   (3994 perm/sec)   p_kst 3.100000e-03   p_cons 8.446533e-01   p_joint 9.320000e-03

Joint ci ratio: 1.025121e-01	ci left: 8.591766e-03	ci right 9.526154e-03	k: 1448	n:160000
Cons ci ratio: 4.203074e-03	ci left: 8.428531e-01	ci right 8.464094e-01	k: 135142	n:160000
KS ci ratio: 1.731329e-01	ci left: 2.917214e-03	ci right 3.476029e-03	k: 510	n:160000
ZNF534   160000 perm   41 sec   (3945 perm/sec)   p_kst 3.187500e-03   p_cons 8.446375e-01   p_joint 9.050000e-03

Joint ci ratio: 1.023262e-01	ci left: 8.120657e-03	ci right 9.002108e-03	k: 1454	n:170000
Cons ci ratio: 4.074414e-03	ci left: 8.431113e-01	ci right 8.465593e-01	k: 143623	n:170000
KS ci ratio: 1.681093e-01	ci left: 2.920180e-03	ci right 3.461688e-03	k: 541	n:170000
ZNF534   170000 perm   44 sec   (3896 perm/sec)   p_kst 3.182353e-03   p_cons 8.448412e-01   p_joint 8.552941e-03

Joint ci ratio: 1.012001e-01	ci left: 7.848120e-03	ci right 8.690055e-03	k: 1487	n:180000
Cons ci ratio: 3.965272e-03	ci left: 8.427841e-01	ci right 8.461381e-01	k: 152004	n:180000
KS ci ratio: 1.639301e-01	ci left: 2.907039e-03	ci right 3.431387e-03	k: 569	n:180000
ZNF534   180000 perm   47 sec   (3840 perm/sec)   p_kst 3.161111e-03   p_cons 8.444667e-01   p_joint 8.261111e-03

Joint ci ratio: 9.919314e-02	ci left: 7.748048e-03	ci right 8.561802e-03	k: 1548	n:190000
Cons ci ratio: 3.862733e-03	ci left: 8.426090e-01	ci right 8.458753e-01	k: 160407	n:190000
KS ci ratio: 1.601823e-01	ci left: 2.890377e-03	ci right 3.398654e-03	k: 596	n:190000
ZNF534   190000 perm   50 sec   (3786 perm/sec)   p_kst 3.136842e-03   p_cons 8.442474e-01   p_joint 8.147368e-03

Joint ci ratio: 9.687719e-02	ci left: 7.726447e-03	ci right 8.517909e-03	k: 1623	n:200000
Cons ci ratio: 3.767392e-03	ci left: 8.424776e-01	ci right 8.456624e-01	k: 168815	n:200000
KS ci ratio: 1.560543e-01	ci left: 2.899529e-03	ci right 3.395045e-03	k: 628	n:200000
ZNF534   200000 perm   54 sec   (3726 perm/sec)   p_kst 3.140000e-03   p_cons 8.440750e-01   p_joint 8.115000e-03

Joint ci ratio: 8.598522e-02	ci left: 9.378415e-03	ci right 1.022568e-02	k: 2057	n:210000
Cons ci ratio: 3.680371e-03	ci left: 8.422449e-01	ci right 8.453551e-01	k: 177199	n:210000
KS ci ratio: 1.525775e-01	ci left: 2.894218e-03	ci right 3.376801e-03	k: 657	n:210000
ZNF534   210000 perm   57 sec   (3678 perm/sec)   p_kst 3.128571e-03   p_cons 8.438048e-01   p_joint 9.795238e-03

Joint ci ratio: 8.513198e-02	ci left: 9.138899e-03	ci right 9.955920e-03	k: 2099	n:220000
Cons ci ratio: 3.590484e-03	ci left: 8.426686e-01	ci right 8.457041e-01	k: 185722	n:220000
KS ci ratio: 1.493233e-01	ci left: 2.889502e-03	ci right 3.360104e-03	k: 686	n:220000
ZNF534   220000 perm   61 sec   (3634 perm/sec)   p_kst 3.118182e-03   p_cons 8.441909e-01   p_joint 9.540909e-03

Joint ci ratio: 8.404606e-02	ci left: 8.975595e-03	ci right 9.767278e-03	k: 2154	n:230000
Cons ci ratio: 3.511150e-03	ci left: 8.427332e-01	ci right 8.457016e-01	k: 194171	n:230000
KS ci ratio: 1.462688e-01	ci left: 2.885295e-03	ci right 3.344759e-03	k: 715	n:230000
ZNF534   230000 perm   64 sec   (3591 perm/sec)   p_kst 3.108696e-03   p_cons 8.442217e-01   p_joint 9.365217e-03

Joint ci ratio: 8.599628e-02	ci left: 8.214055e-03	ci right 8.956220e-03	k: 2059	n:240000
Cons ci ratio: 3.436417e-03	ci left: 8.428265e-01	ci right 8.457319e-01	k: 202628	n:240000
KS ci ratio: 1.433943e-01	ci left: 2.881529e-03	ci right 3.330604e-03	k: 744	n:240000
ZNF534   240000 perm   68 sec   (3551 perm/sec)   p_kst 3.100000e-03   p_cons 8.442833e-01   p_joint 8.579167e-03

Joint ci ratio: 8.840062e-02	ci left: 7.458870e-03	ci right 8.152614e-03	k: 1950	n:250000
Cons ci ratio: 3.364673e-03	ci left: 8.430374e-01	ci right 8.458826e-01	k: 211116	n:250000
KS ci ratio: 1.410490e-01	ci left: 2.862707e-03	ci right 3.300938e-03	k: 769	n:250000
ZNF534   250000 perm   71 sec   (3508 perm/sec)   p_kst 3.076000e-03   p_cons 8.444640e-01   p_joint 7.800000e-03

Joint ci ratio: 7.872454e-02	ci left: 9.074120e-03	ci right 9.821492e-03	k: 2455	n:260000
Cons ci ratio: 3.298205e-03	ci left: 8.431554e-01	ci right 8.459446e-01	k: 219584	n:260000
KS ci ratio: 1.381197e-01	ci left: 2.875095e-03	ci right 3.305330e-03	k: 802	n:260000
ZNF534   260000 perm   75 sec   (3465 perm/sec)   p_kst 3.084615e-03   p_cons 8.445538e-01   p_joint 9.442308e-03

Joint ci ratio: 7.761412e-02	ci left: 8.995850e-03	ci right 9.725852e-03	k: 2526	n:270000
Cons ci ratio: 3.236620e-03	ci left: 8.431759e-01	ci right 8.459130e-01	k: 228028	n:270000
KS ci ratio: 1.353657e-01	ci left: 2.886652e-03	ci right 3.309310e-03	k: 835	n:270000
ZNF534   270000 perm   79 sec   (3424 perm/sec)   p_kst 3.092593e-03   p_cons 8.445481e-01   p_joint 9.355556e-03

Joint ci ratio: 8.026530e-02	ci left: 8.107266e-03	ci right 8.788681e-03	k: 2364	n:280000
Cons ci ratio: 3.179269e-03	ci left: 8.431201e-01	ci right 8.458084e-01	k: 236451	n:280000
KS ci ratio: 1.327701e-01	ci left: 2.897463e-03	ci right 3.312927e-03	k: 868	n:280000
ZNF534   280000 perm   83 sec   (3386 perm/sec)   p_kst 3.100000e-03   p_cons 8.444679e-01   p_joint 8.442857e-03

Joint ci ratio: 7.869876e-02	ci left: 8.148787e-03	ci right 8.819712e-03	k: 2459	n:290000
Cons ci ratio: 3.126830e-03	ci left: 8.429026e-01	ci right 8.455457e-01	k: 244826	n:290000
KS ci ratio: 1.300295e-01	ci left: 2.920945e-03	ci right 3.330463e-03	k: 905	n:290000
ZNF534   290000 perm   87 sec   (3345 perm/sec)   p_kst 3.120690e-03   p_cons 8.442276e-01   p_joint 8.479310e-03

Joint ci ratio: 8.004962e-02	ci left: 7.612435e-03	ci right 8.250459e-03	k: 2378	n:300000
Cons ci ratio: 3.074285e-03	ci left: 8.429240e-01	ci right 8.455227e-01	k: 253268	n:300000
KS ci ratio: 1.277921e-01	ci left: 2.926808e-03	ci right 3.329552e-03	k: 937	n:300000
ZNF534   300000 perm   91 sec   (3310 perm/sec)   p_kst 3.123333e-03   p_cons 8.442267e-01   p_joint 7.926667e-03

Joint ci ratio: 7.886604e-02	ci left: 7.594513e-03	ci right 8.221190e-03	k: 2450	n:310000
Cons ci ratio: 3.024970e-03	ci left: 8.428861e-01	ci right 8.454429e-01	k: 261692	n:310000
KS ci ratio: 1.261237e-01	ci left: 2.910477e-03	ci right 3.305354e-03	k: 962	n:310000
ZNF534   310000 perm   95 sec   (3274 perm/sec)   p_kst 3.103226e-03   p_cons 8.441677e-01   p_joint 7.903226e-03

Joint ci ratio: 7.762498e-02	ci left: 7.599229e-03	ci right 8.215982e-03	k: 2529	n:320000
Cons ci ratio: 2.977601e-03	ci left: 8.428823e-01	ci right 8.453989e-01	k: 270126	n:320000
KS ci ratio: 1.243297e-01	ci left: 2.904283e-03	ci right 3.292302e-03	k: 990	n:320000
ZNF534   320000 perm   99 sec   (3237 perm/sec)   p_kst 3.093750e-03   p_cons 8.441437e-01   p_joint 7.903125e-03

Joint ci ratio: 7.691762e-02	ci left: 7.508608e-03	ci right 8.112204e-03	k: 2576	n:330000
Cons ci ratio: 2.932930e-03	ci left: 8.428304e-01	ci right 8.453090e-01	k: 278544	n:330000
KS ci ratio: 1.224296e-01	ci left: 2.907315e-03	ci right 3.289373e-03	k: 1021	n:330000
ZNF534   330000 perm   103 sec   (3202 perm/sec)   p_kst 3.093939e-03   p_cons 8.440727e-01   p_joint 7.806061e-03

Joint ci ratio: 7.639069e-02	ci left: 7.391603e-03	ci right 7.981541e-03	k: 2612	n:340000
Cons ci ratio: 2.889790e-03	ci left: 8.428202e-01	ci right 8.452622e-01	k: 286975	n:340000
KS ci ratio: 1.210762e-01	ci left: 2.887390e-03	ci right 3.262335e-03	k: 1044	n:340000
ZNF534   340000 perm   107 sec   (3167 perm/sec)   p_kst 3.070588e-03   p_cons 8.440441e-01   p_joint 7.682353e-03

Joint ci ratio: 7.620838e-02	ci left: 7.216823e-03	ci right 7.791376e-03	k: 2625	n:350000
Cons ci ratio: 2.847449e-03	ci left: 8.429082e-01	ci right 8.453146e-01	k: 295440	n:350000
KS ci ratio: 1.195984e-01	ci left: 2.876942e-03	ci right 3.245647e-03	k: 1070	n:350000
ZNF534   350000 perm   112 sec   (3136 perm/sec)   p_kst 3.057143e-03   p_cons 8.441143e-01   p_joint 7.500000e-03

Joint ci ratio: 7.026160e-02	ci left: 8.270921e-03	ci right 8.875918e-03	k: 3085	n:360000
Cons ci ratio: 2.806945e-03	ci left: 8.429889e-01	ci right 8.453611e-01	k: 303904	n:360000
KS ci ratio: 1.180654e-01	ci left: 2.872492e-03	ci right 3.235580e-03	k: 1098	n:360000
ZNF534   360000 perm   116 sec   (3103 perm/sec)   p_kst 3.050000e-03   p_cons 8.441778e-01   p_joint 8.569444e-03

Joint ci ratio: 7.051215e-02	ci left: 7.991584e-03	ci right 8.578318e-03	k: 3064	n:370000
Cons ci ratio: 2.768263e-03	ci left: 8.430518e-01	ci right 8.453915e-01	k: 312363	n:370000
KS ci ratio: 1.166419e-01	ci left: 2.865688e-03	ci right 3.223246e-03	k: 1125	n:370000
ZNF534   370000 perm   120 sec   (3071 perm/sec)   p_kst 3.040541e-03   p_cons 8.442243e-01   p_joint 8.281081e-03

Joint ci ratio: 7.128592e-02	ci left: 7.613206e-03	ci right 8.178547e-03	k: 2999	n:380000
Cons ci ratio: 2.732614e-03	ci left: 8.429691e-01	ci right 8.452783e-01	k: 320768	n:380000
KS ci ratio: 1.151684e-01	ci left: 2.864378e-03	ci right 3.216952e-03	k: 1154	n:380000
ZNF534   380000 perm   125 sec   (3039 perm/sec)   p_kst 3.036842e-03   p_cons 8.441263e-01   p_joint 7.892105e-03

Joint ci ratio: 7.051566e-02	ci left: 7.584222e-03	ci right 8.141076e-03	k: 3065	n:390000
Cons ci ratio: 2.697438e-03	ci left: 8.429757e-01	ci right 8.452551e-01	k: 329206	n:390000
KS ci ratio: 1.137013e-01	ci left: 2.865654e-03	ci right 3.213590e-03	k: 1184	n:390000
ZNF534   390000 perm   130 sec   (3007 perm/sec)   p_kst 3.035897e-03   p_cons 8.441179e-01   p_joint 7.858974e-03

Joint ci ratio: 6.969138e-02	ci left: 7.573916e-03	ci right 8.123249e-03	k: 3138	n:400000
Cons ci ratio: 2.662954e-03	ci left: 8.430448e-01	ci right 8.452952e-01	k: 337669	n:400000
KS ci ratio: 1.125680e-01	ci left: 2.852313e-03	ci right 3.194948e-03	k: 1208	n:400000
ZNF534   400000 perm   135 sec   (2974 perm/sec)   p_kst 3.020000e-03   p_cons 8.441725e-01   p_joint 7.845000e-03

Joint ci ratio: 7.110401e-02	ci left: 7.096801e-03	ci right 7.622392e-03	k: 3016	n:410000
Cons ci ratio: 2.630491e-03	ci left: 8.430373e-01	ci right 8.452602e-01	k: 346102	n:410000
KS ci ratio: 1.111070e-01	ci left: 2.858611e-03	ci right 3.197253e-03	k: 1240	n:410000
ZNF534   410000 perm   139 sec   (2939 perm/sec)   p_kst 3.024390e-03   p_cons 8.441512e-01   p_joint 7.356098e-03

Joint ci ratio: 7.144498e-02	ci left: 6.862322e-03	ci right 7.373085e-03	k: 2988	n:420000
Cons ci ratio: 2.597047e-03	ci left: 8.432477e-01	ci right 8.454428e-01	k: 354626	n:420000
KS ci ratio: 1.097446e-01	ci left: 2.862320e-03	ci right 3.196975e-03	k: 1271	n:420000
ZNF534   420000 perm   144 sec   (2911 perm/sec)   p_kst 3.026190e-03   p_cons 8.443476e-01   p_joint 7.114286e-03

Joint ci ratio: 6.392295e-02	ci left: 8.392537e-03	ci right 8.948998e-03	k: 3727	n:430000
Cons ci ratio: 2.567022e-03	ci left: 8.432245e-01	ci right 8.453941e-01	k: 363054	n:430000
KS ci ratio: 1.087245e-01	ci left: 2.850042e-03	ci right 3.179967e-03	k: 1295	n:430000
ZNF534   430000 perm   149 sec   (2884 perm/sec)   p_kst 3.011628e-03   p_cons 8.443116e-01   p_joint 8.667442e-03

Joint ci ratio: 6.337444e-02	ci left: 8.347167e-03	ci right 8.895697e-03	k: 3792	n:440000
Cons ci ratio: 2.537533e-03	ci left: 8.432526e-01	ci right 8.453974e-01	k: 371504	n:440000
KS ci ratio: 1.074470e-01	ci left: 2.853819e-03	ci right 3.180053e-03	k: 1326	n:440000
ZNF534   440000 perm   154 sec   (2858 perm/sec)   p_kst 3.013636e-03   p_cons 8.443273e-01   p_joint 8.618182e-03

Joint ci ratio: 6.271694e-02	ci left: 8.336648e-03	ci right 8.878596e-03	k: 3872	n:450000
Cons ci ratio: 2.508698e-03	ci left: 8.433153e-01	ci right 8.454358e-01	k: 379970	n:450000
KS ci ratio: 1.060959e-01	ci left: 2.863939e-03	ci right 3.186957e-03	k: 1360	n:450000
ZNF534   450000 perm   159 sec   (2831 perm/sec)   p_kst 3.022222e-03   p_cons 8.443778e-01   p_joint 8.604444e-03

Joint ci ratio: 6.274737e-02	ci left: 8.148973e-03	ci right 8.678986e-03	k: 3869	n:460000
Cons ci ratio: 2.482465e-03	ci left: 8.432010e-01	ci right 8.452990e-01	k: 388356	n:460000
KS ci ratio: 1.048323e-01	ci left: 2.871527e-03	ci right 3.191305e-03	k: 1393	n:460000
ZNF534   460000 perm   164 sec   (2806 perm/sec)   p_kst 3.028261e-03   p_cons 8.442522e-01   p_joint 8.410870e-03

Joint ci ratio: 6.265516e-02	ci left: 8.000703e-03	ci right 8.520280e-03	k: 3881	n:470000
Cons ci ratio: 2.456739e-03	ci left: 8.431237e-01	ci right 8.451997e-01	k: 396757	n:470000
KS ci ratio: 1.038320e-01	ci left: 2.866378e-03	ci right 3.182351e-03	k: 1420	n:470000
ZNF534   470000 perm   169 sec   (2780 perm/sec)   p_kst 3.021277e-03   p_cons 8.441638e-01   p_joint 8.257447e-03

Joint ci ratio: 6.217003e-02	ci left: 7.959116e-03	ci right 8.471847e-03	k: 3942	n:480000
Cons ci ratio: 2.431718e-03	ci left: 8.430581e-01	ci right 8.451127e-01	k: 405162	n:480000
KS ci ratio: 1.030741e-01	ci left: 2.849279e-03	ci right 3.160935e-03	k: 1441	n:480000
ZNF534   480000 perm   174 sec   (2755 perm/sec)   p_kst 3.002083e-03   p_cons 8.440875e-01   p_joint 8.212500e-03

Joint ci ratio: 6.155663e-02	ci left: 7.955415e-03	ci right 8.462671e-03	k: 4021	n:490000
Cons ci ratio: 2.405430e-03	ci left: 8.432163e-01	ci right 8.452490e-01	k: 413675	n:490000
KS ci ratio: 1.020880e-01	ci left: 2.846807e-03	ci right 3.155035e-03	k: 1469	n:490000
ZNF534   490000 perm   180 sec   (2729 perm/sec)   p_kst 2.997959e-03   p_cons 8.442347e-01   p_joint 8.206122e-03

Joint ci ratio: 6.188048e-02	ci left: 7.715543e-03	ci right 8.210184e-03	k: 3980	n:500000
Cons ci ratio: 2.381333e-03	ci left: 8.432178e-01	ci right 8.452302e-01	k: 422113	n:500000
KS ci ratio: 1.009270e-01	ci left: 2.856145e-03	ci right 3.161659e-03	k: 1503	n:500000
ZNF534   500000 perm   185 sec   (2705 perm/sec)   p_kst 3.006000e-03   p_cons 8.442260e-01   p_joint 7.960000e-03

Joint ci ratio: 6.155891e-02	ci left: 7.645331e-03	ci right 8.132833e-03	k: 4022	n:510000
Cons ci ratio: 2.358069e-03	ci left: 8.432057e-01	ci right 8.451983e-01	k: 430544	n:510000
KS ci ratio: 9.983741e-02	ci left: 2.863224e-03	ci right 3.165995e-03	k: 1536	n:510000
ZNF534   510000 perm   190 sec   (2681 perm/sec)   p_kst 3.011765e-03   p_cons 8.442039e-01   p_joint 7.886275e-03

Outputting figure to mutsig2_images.part000000000197/ZNF534.6_2039_510000_0.0030118_0.8442_0.0078863.png
                gene_name: ZNF534
               theta_stop: 0.100 
                    nperm: 510000 
                     p_ks: 0.0030 
        ci_ks_bounds_left: 0.0029 
       ci_ks_bounds_right: 0.0032 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.0079 
     ci_joint_bounds_left: 0.0076 
    ci_joint_bounds_right: 0.0081 

Current progress: 22 percent done.
ZNF540
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.313660e-01	ci left: 1.151417e-02	ci right 1.617538e-02	k: 137	n:10000
Cons ci ratio: 1.086451e+00	ci left: 6.202064e-04	ci right 2.095219e-03	k: 12	n:10000
KS ci ratio: 2.339214e-02	ci left: 7.286569e-01	ci right 7.460046e-01	k: 7374	n:10000
ZNF540   10000 perm   2 sec   (5933 perm/sec)   p_kst 7.374000e-01   p_cons 1.200000e-03   p_joint 1.370000e-02

Joint ci ratio: 1.930428e-01	ci left: 1.824762e-02	ci right 2.219360e-02	k: 403	n:20000
Cons ci ratio: 8.549436e-01	ci left: 6.109296e-04	ci right 1.543998e-03	k: 20	n:20000
KS ci ratio: 1.657940e-02	ci left: 7.303356e-01	ci right 7.425956e-01	k: 14730	n:20000
ZNF540   20000 perm   4 sec   (5498 perm/sec)   p_kst 7.365000e-01   p_cons 1.000000e-03   p_joint 2.015000e-02

Joint ci ratio: 1.749082e-01	ci left: 1.502500e-02	ci right 1.793639e-02	k: 493	n:30000
Cons ci ratio: 6.819977e-01	ci left: 7.297101e-04	ci right 1.505484e-03	k: 32	n:30000
KS ci ratio: 1.348595e-02	ci left: 7.329511e-01	ci right 7.429361e-01	k: 22139	n:30000
ZNF540   30000 perm   6 sec   (5246 perm/sec)   p_kst 7.379667e-01   p_cons 1.066667e-03   p_joint 1.643333e-02

Joint ci ratio: 1.935541e-01	ci left: 9.167106e-03	ci right 1.115497e-02	k: 405	n:40000
Cons ci ratio: 5.380899e-01	ci left: 9.710499e-04	ci right 1.704432e-03	k: 52	n:40000
KS ci ratio: 1.166611e-02	ci left: 7.340632e-01	ci right 7.427022e-01	k: 29536	n:40000
ZNF540   40000 perm   8 sec   (5082 perm/sec)   p_kst 7.384000e-01   p_cons 1.300000e-03   p_joint 1.012500e-02

Joint ci ratio: 2.030337e-01	ci left: 6.648502e-03	ci right 8.169529e-03	k: 369	n:50000
Cons ci ratio: 4.896814e-01	ci left: 9.683502e-04	ci right 1.611803e-03	k: 63	n:50000
KS ci ratio: 1.043288e-02	ci left: 7.345841e-01	ci right 7.423082e-01	k: 36923	n:50000
ZNF540   50000 perm   10 sec   (4943 perm/sec)   p_kst 7.384600e-01   p_cons 1.260000e-03   p_joint 7.380000e-03

Joint ci ratio: 1.948542e-01	ci left: 6.047004e-03	ci right 7.368056e-03	k: 401	n:60000
Cons ci ratio: 4.435603e-01	ci left: 1.012915e-03	ci right 1.603689e-03	k: 77	n:60000
KS ci ratio: 9.503175e-03	ci left: 7.357673e-01	ci right 7.428095e-01	k: 44358	n:60000
ZNF540   60000 perm   12 sec   (4822 perm/sec)   p_kst 7.393000e-01   p_cons 1.283333e-03   p_joint 6.683333e-03

Joint ci ratio: 1.841943e-01	ci left: 5.836284e-03	ci right 7.033753e-03	k: 449	n:70000
Cons ci ratio: 4.106575e-01	ci left: 1.033989e-03	ci right 1.580128e-03	k: 90	n:70000
KS ci ratio: 8.836062e-03	ci left: 7.343670e-01	ci right 7.408990e-01	k: 51635	n:70000
ZNF540   70000 perm   15 sec   (4716 perm/sec)   p_kst 7.376429e-01   p_cons 1.285714e-03   p_joint 6.414286e-03

Joint ci ratio: 1.495731e-01	ci left: 7.875475e-03	ci right 9.160549e-03	k: 680	n:80000
Cons ci ratio: 4.326670e-01	ci left: 8.041499e-04	ci right 1.258290e-03	k: 81	n:80000
KS ci ratio: 8.269768e-03	ci left: 7.343735e-01	ci right 7.404843e-01	k: 58995	n:80000
ZNF540   80000 perm   17 sec   (4626 perm/sec)   p_kst 7.374375e-01   p_cons 1.012500e-03   p_joint 8.500000e-03

Joint ci ratio: 1.417792e-01	ci left: 7.824793e-03	ci right 9.029436e-03	k: 757	n:90000
Cons ci ratio: 4.153114e-01	ci left: 7.842779e-04	ci right 1.204513e-03	k: 88	n:90000
KS ci ratio: 7.788175e-03	ci left: 7.349802e-01	ci right 7.407378e-01	k: 66408	n:90000
ZNF540   90000 perm   20 sec   (4544 perm/sec)   p_kst 7.378667e-01   p_cons 9.777778e-04   p_joint 8.411111e-03

Joint ci ratio: 1.390922e-01	ci left: 7.331641e-03	ci right 8.437190e-03	k: 787	n:100000
Cons ci ratio: 3.957837e-01	ci left: 7.866729e-04	ci right 1.183192e-03	k: 97	n:100000
KS ci ratio: 7.375272e-03	ci left: 7.358246e-01	ci right 7.412815e-01	k: 73856	n:100000
ZNF540   100000 perm   22 sec   (4464 perm/sec)   p_kst 7.385600e-01   p_cons 9.700000e-04   p_joint 7.870000e-03

Joint ci ratio: 1.380006e-01	ci left: 6.779078e-03	ci right 7.792615e-03	k: 800	n:110000
Cons ci ratio: 3.770152e-01	ci left: 7.972398e-04	ci right 1.175322e-03	k: 107	n:110000
KS ci ratio: 7.030326e-03	ci left: 7.360473e-01	ci right 7.412492e-01	k: 81252	n:110000
ZNF540   110000 perm   25 sec   (4389 perm/sec)   p_kst 7.386545e-01   p_cons 9.727273e-04   p_joint 7.272727e-03

Joint ci ratio: 1.429776e-01	ci left: 5.779751e-03	ci right 6.677696e-03	k: 746	n:120000
Cons ci ratio: 3.606863e-01	ci left: 8.064162e-04	ci right 1.168399e-03	k: 117	n:120000
KS ci ratio: 6.727038e-03	ci left: 7.363882e-01	ci right 7.413669e-01	k: 88666	n:120000
ZNF540   120000 perm   28 sec   (4318 perm/sec)   p_kst 7.388833e-01   p_cons 9.750000e-04   p_joint 6.216667e-03

Joint ci ratio: 1.364594e-01	ci left: 5.877091e-03	ci right 6.745152e-03	k: 819	n:130000
Cons ci ratio: 3.220373e-01	ci left: 9.554459e-04	ci right 1.328919e-03	k: 147	n:130000
KS ci ratio: 6.464010e-03	ci left: 7.364337e-01	ci right 7.412171e-01	k: 96048	n:130000
ZNF540   130000 perm   31 sec   (4249 perm/sec)   p_kst 7.388308e-01   p_cons 1.130769e-03   p_joint 6.300000e-03

Joint ci ratio: 1.334937e-01	ci left: 5.712627e-03	ci right 6.536601e-03	k: 856	n:140000
Cons ci ratio: 3.078049e-01	ci left: 9.793024e-04	ci right 1.341868e-03	k: 161	n:140000
KS ci ratio: 6.226146e-03	ci left: 7.366910e-01	ci right 7.412991e-01	k: 103460	n:140000
ZNF540   140000 perm   33 sec   (4182 perm/sec)   p_kst 7.390000e-01   p_cons 1.150000e-03   p_joint 6.114286e-03

Joint ci ratio: 1.119568e-01	ci left: 7.652589e-03	ci right 8.566578e-03	k: 1215	n:150000
Cons ci ratio: 2.928187e-01	ci left: 1.018819e-03	ci right 1.374247e-03	k: 178	n:150000
KS ci ratio: 6.016796e-03	ci left: 7.366559e-01	ci right 7.411082e-01	k: 110833	n:150000
ZNF540   150000 perm   36 sec   (4117 perm/sec)   p_kst 7.388867e-01   p_cons 1.186667e-03   p_joint 8.100000e-03

Joint ci ratio: 1.098657e-01	ci left: 7.459861e-03	ci right 8.333112e-03	k: 1262	n:160000
Cons ci ratio: 2.819967e-01	ci left: 1.036339e-03	ci right 1.382144e-03	k: 192	n:160000
KS ci ratio: 5.823650e-03	ci left: 7.368657e-01	ci right 7.411757e-01	k: 118244	n:160000
ZNF540   160000 perm   39 sec   (4060 perm/sec)   p_kst 7.390250e-01   p_cons 1.200000e-03   p_joint 7.887500e-03

Joint ci ratio: 9.644802e-02	ci left: 9.159146e-03	ci right 1.009299e-02	k: 1635	n:170000
Cons ci ratio: 2.736187e-01	ci left: 1.041050e-03	ci right 1.376333e-03	k: 204	n:170000
KS ci ratio: 5.648758e-03	ci left: 7.369997e-01	ci right 7.411804e-01	k: 125646	n:170000
ZNF540   170000 perm   42 sec   (4001 perm/sec)   p_kst 7.390941e-01   p_cons 1.200000e-03   p_joint 9.617647e-03

Joint ci ratio: 9.409428e-02	ci left: 9.100416e-03	ci right 1.000437e-02	k: 1718	n:180000
Cons ci ratio: 2.641241e-01	ci left: 1.060933e-03	ci right 1.388804e-03	k: 219	n:180000
KS ci ratio: 5.487309e-03	ci left: 7.372207e-01	ci right 7.412827e-01	k: 133066	n:180000
ZNF540   180000 perm   46 sec   (3941 perm/sec)   p_kst 7.392556e-01   p_cons 1.216667e-03   p_joint 9.544444e-03

Joint ci ratio: 9.582027e-02	ci left: 8.312993e-03	ci right 9.154730e-03	k: 1658	n:190000
Cons ci ratio: 2.539360e-01	ci left: 1.093685e-03	ci right 1.416578e-03	k: 237	n:190000
KS ci ratio: 5.339173e-03	ci left: 7.374041e-01	ci right 7.413570e-01	k: 140483	n:190000
ZNF540   190000 perm   49 sec   (3890 perm/sec)   p_kst 7.393842e-01   p_cons 1.247368e-03   p_joint 8.726316e-03

Joint ci ratio: 9.469690e-02	ci left: 8.092535e-03	ci right 8.901808e-03	k: 1698	n:200000
Cons ci ratio: 2.453228e-01	ci left: 1.118687e-03	ci right 1.436052e-03	k: 254	n:200000
KS ci ratio: 5.205997e-03	ci left: 7.373048e-01	ci right 7.411582e-01	k: 147847	n:200000
ZNF540   200000 perm   52 sec   (3840 perm/sec)   p_kst 7.392350e-01   p_cons 1.270000e-03   p_joint 8.490000e-03

Joint ci ratio: 9.372033e-02	ci left: 7.874524e-03	ci right 8.653427e-03	k: 1734	n:210000
Cons ci ratio: 2.420267e-01	ci left: 1.096713e-03	ci right 1.403035e-03	k: 261	n:210000
KS ci ratio: 5.078672e-03	ci left: 7.374930e-01	ci right 7.412528e-01	k: 155269	n:210000
ZNF540   210000 perm   55 sec   (3794 perm/sec)   p_kst 7.393762e-01   p_cons 1.242857e-03   p_joint 8.257143e-03

Joint ci ratio: 9.622912e-02	ci left: 7.125958e-03	ci right 7.850746e-03	k: 1646	n:220000
Cons ci ratio: 2.379758e-01	ci left: 1.085310e-03	ci right 1.382627e-03	k: 270	n:220000
KS ci ratio: 4.960605e-03	ci left: 7.376378e-01	ci right 7.413105e-01	k: 162685	n:220000
ZNF540   220000 perm   59 sec   (3747 perm/sec)   p_kst 7.394773e-01   p_cons 1.227273e-03   p_joint 7.481818e-03

Joint ci ratio: 9.765833e-02	ci left: 6.616655e-03	ci right 7.300207e-03	k: 1599	n:230000
Cons ci ratio: 2.345414e-01	ci left: 1.070846e-03	ci right 1.359352e-03	k: 278	n:230000
KS ci ratio: 4.849858e-03	ci left: 7.378144e-01	ci right 7.414057e-01	k: 170111	n:230000
ZNF540   230000 perm   62 sec   (3701 perm/sec)   p_kst 7.396130e-01   p_cons 1.208696e-03   p_joint 6.952174e-03

Joint ci ratio: 9.622997e-02	ci left: 6.536098e-03	ci right 7.200895e-03	k: 1647	n:240000
Cons ci ratio: 2.292606e-01	ci left: 1.077248e-03	ci right 1.360019e-03	k: 291	n:240000
KS ci ratio: 4.746724e-03	ci left: 7.379353e-01	ci right 7.414505e-01	k: 177527	n:240000
ZNF540   240000 perm   66 sec   (3657 perm/sec)   p_kst 7.396958e-01   p_cons 1.212500e-03   p_joint 6.862500e-03

Joint ci ratio: 9.494699e-02	ci left: 6.450338e-03	ci right 7.097177e-03	k: 1692	n:250000
Cons ci ratio: 2.384343e-01	ci left: 9.513038e-04	ci right 1.212485e-03	k: 269	n:250000
KS ci ratio: 4.650964e-03	ci left: 7.379591e-01	ci right 7.414033e-01	k: 184921	n:250000
ZNF540   250000 perm   69 sec   (3614 perm/sec)   p_kst 7.396840e-01   p_cons 1.076000e-03   p_joint 6.768000e-03

Joint ci ratio: 9.806853e-02	ci left: 5.808052e-03	ci right 6.410730e-03	k: 1587	n:260000
Cons ci ratio: 2.312621e-01	ci left: 9.762550e-04	ci right 1.235073e-03	k: 286	n:260000
KS ci ratio: 4.557951e-03	ci left: 7.382207e-01	ci right 7.415970e-01	k: 192377	n:260000
ZNF540   260000 perm   73 sec   (3572 perm/sec)   p_kst 7.399115e-01   p_cons 1.100000e-03   p_joint 6.103846e-03

Joint ci ratio: 9.644375e-02	ci left: 5.788071e-03	ci right 6.378162e-03	k: 1641	n:270000
Cons ci ratio: 2.269537e-01	ci left: 9.785002e-04	ci right 1.232404e-03	k: 297	n:270000
KS ci ratio: 4.472236e-03	ci left: 7.382965e-01	ci right 7.416094e-01	k: 199788	n:270000
ZNF540   270000 perm   76 sec   (3532 perm/sec)   p_kst 7.399556e-01   p_cons 1.100000e-03   p_joint 6.077778e-03

Joint ci ratio: 9.642476e-02	ci left: 5.584811e-03	ci right 6.154061e-03	k: 1642	n:280000
Cons ci ratio: 2.225174e-01	ci left: 9.839989e-04	ci right 1.233655e-03	k: 309	n:280000
KS ci ratio: 4.389552e-03	ci left: 7.385106e-01	ci right 7.417630e-01	k: 207239	n:280000
ZNF540   280000 perm   80 sec   (3491 perm/sec)   p_kst 7.401393e-01   p_cons 1.103571e-03   p_joint 5.864286e-03

Joint ci ratio: 9.969020e-02	ci left: 5.038968e-03	ci right 5.570991e-03	k: 1537	n:290000
Cons ci ratio: 2.186716e-01	ci left: 9.859033e-04	ci right 1.231139e-03	k: 320	n:290000
KS ci ratio: 4.317243e-03	ci left: 7.381783e-01	ci right 7.413755e-01	k: 214536	n:290000
ZNF540   290000 perm   84 sec   (3452 perm/sec)   p_kst 7.397793e-01   p_cons 1.103448e-03   p_joint 5.300000e-03

Joint ci ratio: 1.002907e-01	ci left: 4.812475e-03	ci right 5.323824e-03	k: 1519	n:300000
Cons ci ratio: 2.146951e-01	ci left: 9.908695e-04	ci right 1.232268e-03	k: 332	n:300000
KS ci ratio: 4.244415e-03	ci left: 7.382294e-01	ci right 7.413727e-01	k: 221941	n:300000
ZNF540   300000 perm   88 sec   (3415 perm/sec)   p_kst 7.398033e-01   p_cons 1.106667e-03   p_joint 5.063333e-03

Joint ci ratio: 9.877578e-02	ci left: 4.805072e-03	ci right 5.307475e-03	k: 1566	n:310000
Cons ci ratio: 2.103185e-01	ci left: 1.001665e-03	ci right 1.240077e-03	k: 346	n:310000
KS ci ratio: 4.177985e-03	ci left: 7.380158e-01	ci right 7.411088e-01	k: 229265	n:310000
ZNF540   310000 perm   92 sec   (3378 perm/sec)   p_kst 7.395645e-01   p_cons 1.116129e-03   p_joint 5.051613e-03

Joint ci ratio: 9.708598e-02	ci left: 4.822581e-03	ci right 5.317698e-03	k: 1621	n:320000
Cons ci ratio: 2.073523e-01	ci left: 9.999783e-04	ci right 1.234207e-03	k: 356	n:320000
KS ci ratio: 4.110573e-03	ci left: 7.381916e-01	ci right 7.412353e-01	k: 236709	n:320000
ZNF540   320000 perm   96 sec   (3343 perm/sec)   p_kst 7.397156e-01   p_cons 1.112500e-03   p_joint 5.065625e-03

Joint ci ratio: 9.623272e-02	ci left: 4.762189e-03	ci right 5.246566e-03	k: 1650	n:330000
Cons ci ratio: 2.034015e-01	ci left: 1.009919e-03	ci right 1.241409e-03	k: 370	n:330000
KS ci ratio: 4.047658e-03	ci left: 7.382296e-01	ci right 7.412268e-01	k: 244111	n:330000
ZNF540   330000 perm   100 sec   (3301 perm/sec)   p_kst 7.397303e-01   p_cons 1.121212e-03   p_joint 5.000000e-03

Joint ci ratio: 8.509342e-02	ci left: 5.938897e-03	ci right 6.469572e-03	k: 2108	n:340000
Cons ci ratio: 2.004517e-01	ci left: 1.010933e-03	ci right 1.238883e-03	k: 381	n:340000
KS ci ratio: 3.989649e-03	ci left: 7.380624e-01	ci right 7.410158e-01	k: 251444	n:340000
ZNF540   340000 perm   104 sec   (3265 perm/sec)   p_kst 7.395412e-01   p_cons 1.120588e-03   p_joint 6.200000e-03

Joint ci ratio: 8.692341e-02	ci left: 5.525937e-03	ci right 6.030869e-03	k: 2021	n:350000
Cons ci ratio: 1.976265e-01	ci left: 1.011911e-03	ci right 1.236480e-03	k: 392	n:350000
KS ci ratio: 3.932603e-03	ci left: 7.380482e-01	ci right 7.409592e-01	k: 258827	n:350000
ZNF540   350000 perm   108 sec   (3230 perm/sec)   p_kst 7.395057e-01   p_cons 1.120000e-03   p_joint 5.774286e-03

Joint ci ratio: 7.931801e-02	ci left: 6.471500e-03	ci right 7.008708e-03	k: 2425	n:360000
Cons ci ratio: 1.946765e-01	ci left: 1.015499e-03	ci right 1.237101e-03	k: 404	n:360000
KS ci ratio: 3.877460e-03	ci left: 7.380824e-01	ci right 7.409526e-01	k: 266227	n:360000
ZNF540   360000 perm   113 sec   (3195 perm/sec)   p_kst 7.395194e-01   p_cons 1.122222e-03   p_joint 6.736111e-03

Joint ci ratio: 9.547782e-02	ci left: 4.318534e-03	ci right 4.754146e-03	k: 1677	n:370000
Cons ci ratio: 1.810872e-01	ci left: 1.150332e-03	ci right 1.381916e-03	k: 467	n:370000
KS ci ratio: 3.826614e-03	ci left: 7.379093e-01	ci right 7.407410e-01	k: 273551	n:370000
ZNF540   370000 perm   117 sec   (3159 perm/sec)   p_kst 7.393270e-01   p_cons 1.262162e-03   p_joint 4.532432e-03

Joint ci ratio: 9.441566e-02	ci left: 4.302512e-03	ci right 4.731413e-03	k: 1715	n:380000
Cons ci ratio: 1.786232e-01	ci left: 1.152731e-03	ci right 1.381299e-03	k: 480	n:380000
KS ci ratio: 3.777275e-03	ci left: 7.377903e-01	ci right 7.405850e-01	k: 280892	n:380000
ZNF540   380000 perm   122 sec   (3122 perm/sec)   p_kst 7.391895e-01   p_cons 1.263158e-03   p_joint 4.513158e-03

Joint ci ratio: 8.999756e-02	ci left: 4.623086e-03	ci right 5.061244e-03	k: 1887	n:390000
Cons ci ratio: 1.760788e-01	ci left: 1.157478e-03	ci right 1.383370e-03	k: 494	n:390000
KS ci ratio: 3.729747e-03	ci left: 7.376828e-01	ci right 7.404418e-01	k: 288235	n:390000
ZNF540   390000 perm   126 sec   (3090 perm/sec)   p_kst 7.390641e-01   p_cons 1.266667e-03   p_joint 4.838462e-03

Joint ci ratio: 8.917630e-02	ci left: 4.593045e-03	ci right 5.024176e-03	k: 1922	n:400000
Cons ci ratio: 1.746740e-01	ci left: 1.147663e-03	ci right 1.369663e-03	k: 502	n:400000
KS ci ratio: 3.681604e-03	ci left: 7.378288e-01	ci right 7.405527e-01	k: 295677	n:400000
ZNF540   400000 perm   131 sec   (3059 perm/sec)   p_kst 7.391925e-01   p_cons 1.255000e-03   p_joint 4.805000e-03

Joint ci ratio: 7.306939e-02	ci left: 6.715937e-03	ci right 7.227653e-03	k: 2857	n:410000
Cons ci ratio: 1.713001e-01	ci left: 1.166341e-03	ci right 1.387146e-03	k: 522	n:410000
KS ci ratio: 3.635461e-03	ci left: 7.379484e-01	ci right 7.406385e-01	k: 303111	n:410000
ZNF540   410000 perm   136 sec   (3026 perm/sec)   p_kst 7.392951e-01   p_cons 1.273171e-03   p_joint 6.968293e-03

Joint ci ratio: 7.106285e-02	ci left: 6.937164e-03	ci right 7.450622e-03	k: 3020	n:420000
Cons ci ratio: 1.687378e-01	ci left: 1.175045e-03	ci right 1.393833e-03	k: 538	n:420000
KS ci ratio: 3.590434e-03	ci left: 7.381245e-01	ci right 7.407818e-01	k: 310571	n:420000
ZNF540   420000 perm   140 sec   (2996 perm/sec)   p_kst 7.394548e-01   p_cons 1.280952e-03   p_joint 7.190476e-03

Joint ci ratio: 6.530662e-02	ci left: 8.037847e-03	ci right 8.582763e-03	k: 3572	n:430000
Cons ci ratio: 1.670422e-01	ci left: 1.172225e-03	ci right 1.388074e-03	k: 549	n:430000
KS ci ratio: 3.548108e-03	ci left: 7.381761e-01	ci right 7.408021e-01	k: 317981	n:430000
ZNF540   430000 perm   145 sec   (2965 perm/sec)   p_kst 7.394907e-01   p_cons 1.276744e-03   p_joint 8.306977e-03

Joint ci ratio: 6.558169e-02	ci left: 7.790306e-03	ci right 8.320748e-03	k: 3543	n:440000
Cons ci ratio: 1.640842e-01	ci left: 1.189156e-03	ci right 1.403862e-03	k: 569	n:440000
KS ci ratio: 3.507969e-03	ci left: 7.381458e-01	ci right 7.407420e-01	k: 325356	n:440000
ZNF540   440000 perm   150 sec   (2936 perm/sec)   p_kst 7.394455e-01   p_cons 1.293182e-03   p_joint 8.052273e-03

Joint ci ratio: 6.514441e-02	ci left: 7.722102e-03	ci right 8.244263e-03	k: 3591	n:450000
Cons ci ratio: 1.621053e-01	ci left: 1.192571e-03	ci right 1.405044e-03	k: 583	n:450000
KS ci ratio: 3.468041e-03	ci left: 7.382417e-01	ci right 7.408086e-01	k: 332787	n:450000
ZNF540   450000 perm   155 sec   (2906 perm/sec)   p_kst 7.395267e-01   p_cons 1.295556e-03   p_joint 7.980000e-03

Joint ci ratio: 6.483252e-02	ci left: 7.629069e-03	ci right 8.142376e-03	k: 3626	n:460000
Cons ci ratio: 1.606002e-01	ci left: 1.189593e-03	ci right 1.399378e-03	k: 594	n:460000
KS ci ratio: 3.429698e-03	ci left: 7.383053e-01	ci right 7.408439e-01	k: 340205	n:460000
ZNF540   460000 perm   160 sec   (2877 perm/sec)   p_kst 7.395761e-01   p_cons 1.291304e-03   p_joint 7.882609e-03

Joint ci ratio: 6.746513e-02	ci left: 6.891228e-03	ci right 7.374453e-03	k: 3351	n:470000
Cons ci ratio: 1.596648e-01	ci left: 1.178579e-03	ci right 1.385095e-03	k: 601	n:470000
KS ci ratio: 3.392730e-03	ci left: 7.383513e-01	ci right 7.408627e-01	k: 347616	n:470000
ZNF540   470000 perm   165 sec   (2847 perm/sec)   p_kst 7.396085e-01   p_cons 1.278723e-03   p_joint 7.129787e-03

Joint ci ratio: 6.720819e-02	ci left: 6.800904e-03	ci right 7.275909e-03	k: 3377	n:480000
Cons ci ratio: 1.584851e-01	ci left: 1.172029e-03	ci right 1.375735e-03	k: 610	n:480000
KS ci ratio: 3.355861e-03	ci left: 7.385188e-01	ci right 7.410033e-01	k: 355086	n:480000
ZNF540   480000 perm   170 sec   (2819 perm/sec)   p_kst 7.397625e-01   p_cons 1.270833e-03   p_joint 7.035417e-03

Joint ci ratio: 6.666870e-02	ci left: 6.772473e-03	ci right 7.241548e-03	k: 3432	n:490000
Cons ci ratio: 1.572043e-01	ci left: 1.167711e-03	ci right 1.368872e-03	k: 620	n:490000
KS ci ratio: 3.322456e-03	ci left: 7.384138e-01	ci right 7.408732e-01	k: 362426	n:490000
ZNF540   490000 perm   176 sec   (2790 perm/sec)   p_kst 7.396449e-01   p_cons 1.265306e-03   p_joint 7.004082e-03

Joint ci ratio: 6.636269e-02	ci left: 6.699951e-03	ci right 7.161790e-03	k: 3464	n:500000
Cons ci ratio: 1.558305e-01	ci left: 1.165495e-03	ci right 1.364356e-03	k: 631	n:500000
KS ci ratio: 3.288234e-03	ci left: 7.385234e-01	ci right 7.409578e-01	k: 369871	n:500000
ZNF540   500000 perm   181 sec   (2762 perm/sec)   p_kst 7.397420e-01   p_cons 1.262000e-03   p_joint 6.928000e-03

Joint ci ratio: 6.562756e-02	ci left: 6.718999e-03	ci right 7.176826e-03	k: 3542	n:510000
Cons ci ratio: 1.544921e-01	ci left: 1.163374e-03	ci right 1.360009e-03	k: 642	n:510000
KS ci ratio: 3.255877e-03	ci left: 7.385307e-01	ci right 7.409411e-01	k: 377266	n:510000
ZNF540   510000 perm   186 sec   (2736 perm/sec)   p_kst 7.397373e-01   p_cons 1.258824e-03   p_joint 6.945098e-03

Joint ci ratio: 6.541852e-02	ci left: 6.633284e-03	ci right 7.083776e-03	k: 3565	n:520000
Cons ci ratio: 1.534226e-01	ci left: 1.157642e-03	ci right 1.351830e-03	k: 651	n:520000
KS ci ratio: 3.223008e-03	ci left: 7.387111e-01	ci right 7.410977e-01	k: 384751	n:520000
ZNF540   520000 perm   192 sec   (2711 perm/sec)   p_kst 7.399058e-01   p_cons 1.251923e-03   p_joint 6.855769e-03

Joint ci ratio: 6.571095e-02	ci left: 6.450576e-03	ci right 6.890692e-03	k: 3534	n:530000
Cons ci ratio: 1.521448e-01	ci left: 1.155761e-03	ci right 1.347871e-03	k: 662	n:530000
KS ci ratio: 3.191644e-03	ci left: 7.388206e-01	ci right 7.411843e-01	k: 392202	n:530000
ZNF540   530000 perm   197 sec   (2687 perm/sec)   p_kst 7.400038e-01   p_cons 1.249057e-03   p_joint 6.667925e-03

Joint ci ratio: 6.513335e-02	ci left: 6.445878e-03	ci right 6.881662e-03	k: 3597	n:540000
Cons ci ratio: 1.511230e-01	ci left: 1.150392e-03	ci right 1.340210e-03	k: 671	n:540000
KS ci ratio: 3.163248e-03	ci left: 7.386739e-01	ci right 7.410161e-01	k: 399517	n:540000
ZNF540   540000 perm   203 sec   (2663 perm/sec)   p_kst 7.398463e-01   p_cons 1.242593e-03   p_joint 6.661111e-03

Joint ci ratio: 6.023379e-02	ci left: 7.411571e-03	ci right 7.873638e-03	k: 4202	n:550000
Cons ci ratio: 1.495728e-01	ci left: 1.153973e-03	ci right 1.342253e-03	k: 685	n:550000
KS ci ratio: 3.133685e-03	ci left: 7.387676e-01	ci right 7.410881e-01	k: 406961	n:550000
ZNF540   550000 perm   208 sec   (2640 perm/sec)   p_kst 7.399291e-01   p_cons 1.245455e-03   p_joint 7.640000e-03

Joint ci ratio: 6.023794e-02	ci left: 7.279206e-03	ci right 7.733054e-03	k: 4202	n:560000
Cons ci ratio: 1.481753e-01	ci left: 1.155716e-03	ci right 1.342363e-03	k: 698	n:560000
KS ci ratio: 3.105872e-03	ci left: 7.387417e-01	ci right 7.410415e-01	k: 414340	n:560000
ZNF540   560000 perm   214 sec   (2617 perm/sec)   p_kst 7.398929e-01   p_cons 1.246429e-03   p_joint 7.503571e-03

Joint ci ratio: 6.036504e-02	ci left: 7.122109e-03	ci right 7.567131e-03	k: 4185	n:570000
Cons ci ratio: 1.464051e-01	ci left: 1.164166e-03	ci right 1.349735e-03	k: 715	n:570000
KS ci ratio: 3.079053e-03	ci left: 7.386835e-01	ci right 7.409632e-01	k: 421700	n:570000
ZNF540   570000 perm   220 sec   (2594 perm/sec)   p_kst 7.398246e-01   p_cons 1.254386e-03   p_joint 7.342105e-03

Joint ci ratio: 5.984549e-02	ci left: 7.123284e-03	ci right 7.564417e-03	k: 4258	n:580000
Cons ci ratio: 1.445981e-01	ci left: 1.173999e-03	ci right 1.358627e-03	k: 733	n:580000
KS ci ratio: 3.052699e-03	ci left: 7.386550e-01	ci right 7.409150e-01	k: 429076	n:580000
ZNF540   580000 perm   226 sec   (2572 perm/sec)   p_kst 7.397862e-01   p_cons 1.263793e-03   p_joint 7.341379e-03

Joint ci ratio: 6.005554e-02	ci left: 6.954117e-03	ci right 7.386337e-03	k: 4229	n:590000
Cons ci ratio: 1.429516e-01	ci left: 1.181878e-03	ci right 1.365448e-03	k: 750	n:590000
KS ci ratio: 3.026822e-03	ci left: 7.386513e-01	ci right 7.408921e-01	k: 436466	n:590000
ZNF540   590000 perm   231 sec   (2549 perm/sec)   p_kst 7.397729e-01   p_cons 1.271186e-03   p_joint 7.167797e-03

Joint ci ratio: 6.036895e-02	ci left: 6.767608e-03	ci right 7.190507e-03	k: 4186	n:600000
Cons ci ratio: 1.420096e-01	ci left: 1.178253e-03	ci right 1.359951e-03	k: 760	n:600000
KS ci ratio: 3.002048e-03	ci left: 7.385894e-01	ci right 7.408116e-01	k: 443821	n:600000
ZNF540   600000 perm   237 sec   (2528 perm/sec)   p_kst 7.397017e-01   p_cons 1.266667e-03   p_joint 6.976667e-03

Joint ci ratio: 6.029996e-02	ci left: 6.672800e-03	ci right 7.089281e-03	k: 4196	n:610000
Cons ci ratio: 1.409945e-01	ci left: 1.176331e-03	ci right 1.356328e-03	k: 771	n:610000
KS ci ratio: 2.978075e-03	ci left: 7.385033e-01	ci right 7.407075e-01	k: 451160	n:610000
ZNF540   610000 perm   243 sec   (2507 perm/sec)   p_kst 7.396066e-01   p_cons 1.263934e-03   p_joint 6.878689e-03

Joint ci ratio: 5.984563e-02	ci left: 6.666849e-03	ci right 7.079715e-03	k: 4260	n:620000
Cons ci ratio: 1.395553e-01	ci left: 1.182259e-03	ci right 1.361163e-03	k: 787	n:620000
KS ci ratio: 2.953937e-03	ci left: 7.385154e-01	ci right 7.407017e-01	k: 458558	n:620000
ZNF540   620000 perm   249 sec   (2486 perm/sec)   p_kst 7.396097e-01   p_cons 1.269355e-03   p_joint 6.870968e-03

Joint ci ratio: 6.101304e-02	ci left: 6.310859e-03	ci right 6.709572e-03	k: 4100	n:630000
Cons ci ratio: 1.382455e-01	ci left: 1.186475e-03	ci right 1.364193e-03	k: 802	n:630000
KS ci ratio: 2.929820e-03	ci left: 7.386003e-01	ci right 7.407690e-01	k: 466002	n:630000
ZNF540   630000 perm   256 sec   (2466 perm/sec)   p_kst 7.396857e-01   p_cons 1.273016e-03   p_joint 6.507937e-03

Joint ci ratio: 6.048407e-02	ci left: 6.323044e-03	ci right 6.718942e-03	k: 4172	n:640000
Cons ci ratio: 1.372240e-01	ci left: 1.186041e-03	ci right 1.362274e-03	k: 814	n:640000
KS ci ratio: 2.906851e-03	ci left: 7.386075e-01	ci right 7.407591e-01	k: 473398	n:640000
ZNF540   640000 perm   262 sec   (2445 perm/sec)   p_kst 7.396844e-01   p_cons 1.271875e-03   p_joint 6.518750e-03

Joint ci ratio: 5.998997e-02	ci left: 6.330322e-03	ci right 6.723326e-03	k: 4241	n:650000
Cons ci ratio: 1.360603e-01	ci left: 1.188596e-03	ci right 1.363590e-03	k: 828	n:650000
KS ci ratio: 2.884368e-03	ci left: 7.386206e-01	ci right 7.407557e-01	k: 480798	n:650000
ZNF540   650000 perm   268 sec   (2425 perm/sec)   p_kst 7.396892e-01   p_cons 1.273846e-03   p_joint 6.524615e-03

Joint ci ratio: 5.976649e-02	ci left: 6.282163e-03	ci right 6.670673e-03	k: 4273	n:660000
Cons ci ratio: 1.348456e-01	ci left: 1.192544e-03	ci right 1.366426e-03	k: 843	n:660000
KS ci ratio: 2.862443e-03	ci left: 7.386274e-01	ci right 7.407462e-01	k: 488194	n:660000
ZNF540   660000 perm   274 sec   (2406 perm/sec)   p_kst 7.396879e-01   p_cons 1.277273e-03   p_joint 6.474242e-03

Joint ci ratio: 5.937224e-02	ci left: 6.272206e-03	ci right 6.657454e-03	k: 4330	n:670000
Cons ci ratio: 1.338189e-01	ci left: 1.193496e-03	ci right 1.366086e-03	k: 856	n:670000
KS ci ratio: 2.840185e-03	ci left: 7.387462e-01	ci right 7.408488e-01	k: 495665	n:670000
ZNF540   670000 perm   281 sec   (2386 perm/sec)   p_kst 7.397985e-01   p_cons 1.277612e-03   p_joint 6.462687e-03

Joint ci ratio: 5.684121e-02	ci left: 6.748111e-03	ci right 7.144342e-03	k: 4722	n:680000
Cons ci ratio: 1.331991e-01	ci left: 1.187316e-03	ci right 1.358154e-03	k: 864	n:680000
KS ci ratio: 2.818987e-03	ci left: 7.387864e-01	ci right 7.408734e-01	k: 503085	n:680000
ZNF540   680000 perm   287 sec   (2367 perm/sec)   p_kst 7.398309e-01   p_cons 1.270588e-03   p_joint 6.944118e-03

Joint ci ratio: 5.638906e-02	ci left: 6.758899e-03	ci right 7.152503e-03	k: 4798	n:690000
Cons ci ratio: 1.319837e-01	ci left: 1.192528e-03	ci right 1.362428e-03	k: 880	n:690000
KS ci ratio: 2.797740e-03	ci left: 7.388966e-01	ci right 7.409681e-01	k: 510554	n:690000
ZNF540   690000 perm   294 sec   (2349 perm/sec)   p_kst 7.399333e-01   p_cons 1.275362e-03   p_joint 6.953623e-03

Joint ci ratio: 5.624455e-02	ci left: 6.697549e-03	ci right 7.086548e-03	k: 4823	n:700000
Cons ci ratio: 1.309473e-01	ci left: 1.194834e-03	ci right 1.363622e-03	k: 894	n:700000
KS ci ratio: 2.778173e-03	ci left: 7.388363e-01	ci right 7.408932e-01	k: 517906	n:700000
ZNF540   700000 perm   300 sec   (2331 perm/sec)   p_kst 7.398657e-01   p_cons 1.277143e-03   p_joint 6.890000e-03

Joint ci ratio: 5.605458e-02	ci left: 6.649039e-03	ci right 7.033874e-03	k: 4856	n:710000
Cons ci ratio: 1.303664e-01	ci left: 1.188905e-03	ci right 1.356052e-03	k: 902	n:710000
KS ci ratio: 2.758101e-03	ci left: 7.389047e-01	ci right 7.409469e-01	k: 525348	n:710000
ZNF540   710000 perm   307 sec   (2312 perm/sec)   p_kst 7.399268e-01   p_cons 1.270423e-03   p_joint 6.839437e-03

Joint ci ratio: 5.562081e-02	ci left: 6.660774e-03	ci right 7.043210e-03	k: 4932	n:720000
Cons ci ratio: 1.292262e-01	ci left: 1.193893e-03	ci right 1.360161e-03	k: 918	n:720000
KS ci ratio: 2.738854e-03	ci left: 7.389156e-01	ci right 7.409435e-01	k: 532750	n:720000
ZNF540   720000 perm   314 sec   (2295 perm/sec)   p_kst 7.399306e-01   p_cons 1.275000e-03   p_joint 6.850000e-03

Joint ci ratio: 5.547081e-02	ci left: 6.605998e-03	ci right 6.984233e-03	k: 4959	n:730000
Cons ci ratio: 1.281841e-01	ci left: 1.197425e-03	ci right 1.362738e-03	k: 933	n:730000
KS ci ratio: 2.720110e-03	ci left: 7.389112e-01	ci right 7.409252e-01	k: 540141	n:730000
ZNF540   730000 perm   321 sec   (2276 perm/sec)   p_kst 7.399192e-01   p_cons 1.278082e-03   p_joint 6.793151e-03

Joint ci ratio: 5.629623e-02	ci left: 6.326159e-03	ci right 6.693936e-03	k: 4816	n:740000
Cons ci ratio: 1.267663e-01	ci left: 1.208717e-03	ci right 1.373605e-03	k: 954	n:740000
KS ci ratio: 2.701765e-03	ci left: 7.389043e-01	ci right 7.409046e-01	k: 547530	n:740000
ZNF540   740000 perm   328 sec   (2259 perm/sec)   p_kst 7.399054e-01   p_cons 1.289189e-03   p_joint 6.508108e-03

Joint ci ratio: 5.595483e-02	ci left: 6.319373e-03	ci right 6.684455e-03	k: 4875	n:750000
Cons ci ratio: 1.253944e-01	ci left: 1.219719e-03	ci right 1.384172e-03	k: 975	n:750000
KS ci ratio: 2.684038e-03	ci left: 7.388615e-01	ci right 7.408486e-01	k: 554892	n:750000
ZNF540   750000 perm   335 sec   (2242 perm/sec)   p_kst 7.398560e-01   p_cons 1.300000e-03   p_joint 6.500000e-03

Joint ci ratio: 5.588231e-02	ci left: 6.253083e-03	ci right 6.613852e-03	k: 4888	n:760000
Cons ci ratio: 1.242534e-01	ci left: 1.226615e-03	ci right 1.390382e-03	k: 993	n:760000
KS ci ratio: 2.666445e-03	ci left: 7.388502e-01	ci right 7.408243e-01	k: 562277	n:760000
ZNF540   760000 perm   342 sec   (2225 perm/sec)   p_kst 7.398382e-01   p_cons 1.306579e-03   p_joint 6.431579e-03

Joint ci ratio: 5.574141e-02	ci left: 6.203884e-03	ci right 6.560883e-03	k: 4913	n:770000
Cons ci ratio: 1.235102e-01	ci left: 1.225786e-03	ci right 1.388393e-03	k: 1005	n:770000
KS ci ratio: 2.648675e-03	ci left: 7.389147e-01	ci right 7.408757e-01	k: 569720	n:770000
ZNF540   770000 perm   349 sec   (2208 perm/sec)   p_kst 7.398961e-01   p_cons 1.305195e-03   p_joint 6.380519e-03

Joint ci ratio: 5.296717e-02	ci left: 6.788335e-03	ci right 7.158931e-03	k: 5438	n:780000
Cons ci ratio: 1.230224e-01	ci left: 1.220011e-03	ci right 1.381165e-03	k: 1013	n:780000
KS ci ratio: 2.631527e-03	ci left: 7.389378e-01	ci right 7.408861e-01	k: 577132	n:780000
ZNF540   780000 perm   356 sec   (2192 perm/sec)   p_kst 7.399128e-01   p_cons 1.298718e-03   p_joint 6.971795e-03

Joint ci ratio: 5.260074e-02	ci left: 6.797340e-03	ci right 7.165783e-03	k: 5514	n:790000
Cons ci ratio: 1.223607e-01	ci left: 1.218064e-03	ci right 1.378034e-03	k: 1024	n:790000
KS ci ratio: 2.615353e-03	ci left: 7.388652e-01	ci right 7.408014e-01	k: 584469	n:790000
ZNF540   790000 perm   363 sec   (2176 perm/sec)   p_kst 7.398342e-01   p_cons 1.296203e-03   p_joint 6.979747e-03

Joint ci ratio: 5.225592e-02	ci left: 6.802428e-03	ci right 7.168656e-03	k: 5587	n:800000
Cons ci ratio: 1.210676e-01	ci left: 1.229501e-03	ci right 1.389145e-03	k: 1046	n:800000
KS ci ratio: 2.598385e-03	ci left: 7.389560e-01	ci right 7.408798e-01	k: 591935	n:800000
ZNF540   800000 perm   370 sec   (2160 perm/sec)   p_kst 7.399187e-01   p_cons 1.307500e-03   p_joint 6.983750e-03

Joint ci ratio: 5.232896e-02	ci left: 6.700161e-03	ci right 7.061403e-03	k: 5572	n:810000
Cons ci ratio: 1.203798e-01	ci left: 1.228690e-03	ci right 1.387257e-03	k: 1058	n:810000
KS ci ratio: 2.582504e-03	ci left: 7.389308e-01	ci right 7.408428e-01	k: 599309	n:810000
ZNF540   810000 perm   378 sec   (2144 perm/sec)   p_kst 7.398877e-01   p_cons 1.306173e-03   p_joint 6.879012e-03

Joint ci ratio: 5.215245e-02	ci left: 6.664185e-03	ci right 7.022239e-03	k: 5610	n:820000
Cons ci ratio: 1.194248e-01	ci left: 1.233816e-03	ci right 1.391692e-03	k: 1075	n:820000
KS ci ratio: 2.567114e-03	ci left: 7.388758e-01	ci right 7.407762e-01	k: 606658	n:820000
ZNF540   820000 perm   385 sec   (2129 perm/sec)   p_kst 7.398268e-01   p_cons 1.310976e-03   p_joint 6.841463e-03

Joint ci ratio: 5.236171e-02	ci left: 6.531563e-03	ci right 6.883941e-03	k: 5566	n:830000
Cons ci ratio: 1.185465e-01	ci left: 1.237654e-03	ci right 1.394775e-03	k: 1091	n:830000
KS ci ratio: 2.551485e-03	ci left: 7.388993e-01	ci right 7.407882e-01	k: 614071	n:830000
ZNF540   830000 perm   393 sec   (2112 perm/sec)   p_kst 7.398446e-01   p_cons 1.314458e-03   p_joint 6.706024e-03

Joint ci ratio: 5.279514e-02	ci left: 6.348056e-03	ci right 6.693456e-03	k: 5476	n:840000
Cons ci ratio: 1.177937e-01	ci left: 1.239094e-03	ci right 1.395329e-03	k: 1105	n:840000
KS ci ratio: 2.535738e-03	ci left: 7.389831e-01	ci right 7.408605e-01	k: 621535	n:840000
ZNF540   840000 perm   400 sec   (2098 perm/sec)   p_kst 7.399226e-01   p_cons 1.315476e-03   p_joint 6.519048e-03

Joint ci ratio: 5.247510e-02	ci left: 6.351159e-03	ci right 6.694570e-03	k: 5543	n:850000
Cons ci ratio: 1.172124e-01	ci left: 1.237077e-03	ci right 1.392235e-03	k: 1116	n:850000
KS ci ratio: 2.520495e-03	ci left: 7.390320e-01	ci right 7.408982e-01	k: 628971	n:850000
ZNF540   850000 perm   408 sec   (2082 perm/sec)   p_kst 7.399659e-01   p_cons 1.312941e-03   p_joint 6.521176e-03

Joint ci ratio: 5.130268e-02	ci left: 6.569992e-03	ci right 6.917063e-03	k: 5798	n:860000
Cons ci ratio: 1.167433e-01	ci left: 1.232852e-03	ci right 1.386818e-03	k: 1125	n:860000
KS ci ratio: 2.505833e-03	ci left: 7.390320e-01	ci right 7.408873e-01	k: 636366	n:860000
ZNF540   860000 perm   416 sec   (2067 perm/sec)   p_kst 7.399605e-01   p_cons 1.308140e-03   p_joint 6.741860e-03

Joint ci ratio: 5.131805e-02	ci left: 6.491064e-03	ci right 6.834072e-03	k: 5795	n:870000
Cons ci ratio: 1.161263e-01	ci left: 1.232072e-03	ci right 1.385072e-03	k: 1137	n:870000
KS ci ratio: 2.491722e-03	ci left: 7.389860e-01	ci right 7.408308e-01	k: 643721	n:870000
ZNF540   870000 perm   424 sec   (2053 perm/sec)   p_kst 7.399092e-01   p_cons 1.306897e-03   p_joint 6.660920e-03

Joint ci ratio: 5.161667e-02	ci left: 6.343255e-03	ci right 6.680460e-03	k: 5729	n:880000
Cons ci ratio: 1.158218e-01	ci left: 1.224692e-03	ci right 1.376349e-03	k: 1143	n:880000
KS ci ratio: 2.477342e-03	ci left: 7.390196e-01	ci right 7.408538e-01	k: 651145	n:880000
ZNF540   880000 perm   432 sec   (2039 perm/sec)   p_kst 7.399375e-01   p_cons 1.298864e-03   p_joint 6.510227e-03

Joint ci ratio: 5.298525e-02	ci left: 5.950368e-03	ci right 6.275331e-03	k: 5439	n:890000
Cons ci ratio: 1.088937e-01	ci left: 1.374744e-03	ci right 1.534147e-03	k: 1293	n:890000
KS ci ratio: 2.463380e-03	ci left: 7.390255e-01	ci right 7.408493e-01	k: 658545	n:890000
ZNF540   890000 perm   440 sec   (2025 perm/sec)   p_kst 7.399382e-01   p_cons 1.452809e-03   p_joint 6.111236e-03

Joint ci ratio: 5.268103e-02	ci left: 5.953329e-03	ci right 6.276529e-03	k: 5502	n:900000
Cons ci ratio: 1.084340e-01	ci left: 1.371359e-03	ci right 1.529656e-03	k: 1304	n:900000
KS ci ratio: 2.449589e-03	ci left: 7.390413e-01	ci right 7.408549e-01	k: 665954	n:900000
ZNF540   900000 perm   447 sec   (2011 perm/sec)   p_kst 7.399489e-01   p_cons 1.448889e-03   p_joint 6.113333e-03

Joint ci ratio: 5.252937e-02	ci left: 5.922607e-03	ci right 6.243186e-03	k: 5534	n:910000
Cons ci ratio: 1.077752e-01	ci left: 1.373396e-03	ci right 1.530904e-03	k: 1320	n:910000
KS ci ratio: 2.436297e-03	ci left: 7.390139e-01	ci right 7.408176e-01	k: 673324	n:910000
ZNF540   910000 perm   456 sec   (1998 perm/sec)   p_kst 7.399165e-01   p_cons 1.450549e-03   p_joint 6.081319e-03

Joint ci ratio: 5.479805e-02	ci left: 5.379909e-03	ci right 5.684087e-03	k: 5088	n:920000
Cons ci ratio: 1.129925e-01	ci left: 1.232684e-03	ci right 1.381354e-03	k: 1201	n:920000
KS ci ratio: 2.423419e-03	ci left: 7.389555e-01	ci right 7.407495e-01	k: 680665	n:920000
ZNF540   920000 perm   464 sec   (1984 perm/sec)   p_kst 7.398533e-01   p_cons 1.305435e-03   p_joint 5.530435e-03

Joint ci ratio: 5.512190e-02	ci left: 5.259482e-03	ci right 5.558664e-03	k: 5029	n:930000
Cons ci ratio: 1.124328e-01	ci left: 1.231969e-03	ci right 1.379767e-03	k: 1213	n:930000
KS ci ratio: 2.410412e-03	ci left: 7.389512e-01	ci right 7.407355e-01	k: 688055	n:930000
ZNF540   930000 perm   472 sec   (1971 perm/sec)   p_kst 7.398441e-01   p_cons 1.304301e-03   p_joint 5.407527e-03

Joint ci ratio: 5.496989e-02	ci left: 5.232906e-03	ci right 5.529729e-03	k: 5057	n:940000
Cons ci ratio: 1.115628e-01	ci left: 1.238510e-03	ci right 1.385868e-03	k: 1232	n:940000
KS ci ratio: 2.397698e-03	ci left: 7.389331e-01	ci right 7.407080e-01	k: 695432	n:940000
ZNF540   940000 perm   480 sec   (1957 perm/sec)   p_kst 7.398213e-01   p_cons 1.310638e-03   p_joint 5.379787e-03

Joint ci ratio: 5.472723e-02	ci left: 5.224541e-03	ci right 5.519540e-03	k: 5102	n:950000
Cons ci ratio: 1.109347e-01	ci left: 1.239799e-03	ci right 1.386426e-03	k: 1246	n:950000
KS ci ratio: 2.384473e-03	ci left: 7.390303e-01	ci right 7.407956e-01	k: 702918	n:950000
ZNF540   950000 perm   489 sec   (1944 perm/sec)   p_kst 7.399137e-01   p_cons 1.311579e-03   p_joint 5.370526e-03

Joint ci ratio: 5.655127e-02	ci left: 4.839340e-03	ci right 5.121993e-03	k: 4780	n:960000
Cons ci ratio: 1.102733e-01	ci left: 1.242078e-03	ci right 1.388041e-03	k: 1261	n:960000
KS ci ratio: 2.371855e-03	ci left: 7.390619e-01	ci right 7.408179e-01	k: 710343	n:960000
ZNF540   960000 perm   497 sec   (1930 perm/sec)   p_kst 7.399406e-01   p_cons 1.313542e-03   p_joint 4.979167e-03

Joint ci ratio: 5.646970e-02	ci left: 4.803676e-03	ci right 5.083829e-03	k: 4794	n:970000
Cons ci ratio: 1.096237e-01	ci left: 1.244311e-03	ci right 1.389620e-03	k: 1276	n:970000
KS ci ratio: 2.359821e-03	ci left: 7.390299e-01	ci right 7.407769e-01	k: 717707	n:970000
ZNF540   970000 perm   506 sec   (1918 perm/sec)   p_kst 7.399041e-01   p_cons 1.315464e-03   p_joint 4.942268e-03

Joint ci ratio: 5.658985e-02	ci left: 4.734535e-03	ci right 5.011261e-03	k: 4774	n:980000
Cons ci ratio: 1.092822e-01	ci left: 1.239554e-03	ci right 1.383828e-03	k: 1284	n:980000
KS ci ratio: 2.348081e-03	ci left: 7.389802e-01	ci right 7.407184e-01	k: 725053	n:980000
ZNF540   980000 perm   514 sec   (1905 perm/sec)   p_kst 7.398500e-01   p_cons 1.310204e-03   p_joint 4.871429e-03

Joint ci ratio: 5.626070e-02	ci left: 4.742479e-03	ci right 5.018006e-03	k: 4830	n:990000
Cons ci ratio: 1.085245e-01	ci left: 1.244720e-03	ci right 1.388526e-03	k: 1302	n:990000
KS ci ratio: 2.336029e-03	ci left: 7.390114e-01	ci right 7.407407e-01	k: 732478	n:990000
ZNF540   990000 perm   523 sec   (1893 perm/sec)   p_kst 7.398768e-01   p_cons 1.315152e-03   p_joint 4.878788e-03

Joint ci ratio: 5.602369e-02	ci left: 4.735478e-03	ci right 5.009402e-03	k: 4871	n:1000000
Cons ci ratio: 1.079461e-01	ci left: 1.245894e-03	ci right 1.389020e-03	k: 1316	n:1000000
KS ci ratio: 2.324004e-03	ci left: 7.390680e-01	ci right 7.407886e-01	k: 739929	n:1000000
ZNF540   1000000 perm   532 sec   (1881 perm/sec)   p_kst 7.399290e-01   p_cons 1.316000e-03   p_joint 4.871000e-03

Joint ci ratio: 5.589263e-02	ci left: 4.711044e-03	ci right 4.982896e-03	k: 4894	n:1010000
Cons ci ratio: 1.072961e-01	ci left: 1.248974e-03	ci right 1.391535e-03	k: 1332	n:1010000
KS ci ratio: 2.312276e-03	ci left: 7.391047e-01	ci right 7.408167e-01	k: 747361	n:1010000
ZNF540   1010000 perm   541 sec   (1868 perm/sec)   p_kst 7.399614e-01   p_cons 1.318812e-03   p_joint 4.845545e-03

Joint ci ratio: 5.568857e-02	ci left: 4.699659e-03	ci right 4.969832e-03	k: 4930	n:1020000
Cons ci ratio: 1.070158e-01	ci left: 1.243407e-03	ci right 1.384939e-03	k: 1339	n:1020000
KS ci ratio: 2.300817e-03	ci left: 7.391250e-01	ci right 7.408285e-01	k: 754777	n:1020000
ZNF540   1020000 perm   550 sec   (1856 perm/sec)   p_kst 7.399775e-01   p_cons 1.312745e-03   p_joint 4.833333e-03

Joint ci ratio: 5.591823e-02	ci left: 4.615732e-03	ci right 4.882210e-03	k: 4890	n:1030000
Cons ci ratio: 1.065399e-01	ci left: 1.242675e-03	ci right 1.383455e-03	k: 1351	n:1030000
KS ci ratio: 2.289458e-03	ci left: 7.391566e-01	ci right 7.408518e-01	k: 762205	n:1030000
ZNF540   1030000 perm   558 sec   (1844 perm/sec)   p_kst 7.400049e-01   p_cons 1.311650e-03   p_joint 4.747573e-03

Joint ci ratio: 5.701316e-02	ci left: 4.395963e-03	ci right 4.654885e-03	k: 4705	n:1040000
Cons ci ratio: 1.060703e-01	ci left: 1.241958e-03	ci right 1.381997e-03	k: 1363	n:1040000
KS ci ratio: 2.278744e-03	ci left: 7.391067e-01	ci right 7.407938e-01	k: 769549	n:1040000
ZNF540   1040000 perm   568 sec   (1832 perm/sec)   p_kst 7.399510e-01   p_cons 1.310577e-03   p_joint 4.524038e-03

Joint ci ratio: 5.134309e-02	ci left: 5.379172e-03	ci right 5.663566e-03	k: 5796	n:1050000
Cons ci ratio: 1.054152e-01	ci left: 1.245892e-03	ci right 1.385454e-03	k: 1380	n:1050000
KS ci ratio: 2.267622e-03	ci left: 7.391522e-01	ci right 7.408312e-01	k: 776992	n:1050000
ZNF540   1050000 perm   577 sec   (1820 perm/sec)   p_kst 7.399924e-01   p_cons 1.314286e-03   p_joint 5.520000e-03

Joint ci ratio: 5.965107e-02	ci left: 3.936487e-03	ci right 4.179443e-03	k: 4300	n:1060000
Cons ci ratio: 1.048097e-01	ci left: 1.248836e-03	ci right 1.387874e-03	k: 1396	n:1060000
KS ci ratio: 2.269511e-03	ci left: 7.370041e-01	ci right 7.386795e-01	k: 782113	n:1060000
ZNF540   1060000 perm   587 sec   (1807 perm/sec)   p_kst 7.378425e-01   p_cons 1.316981e-03   p_joint 4.056604e-03

Joint ci ratio: 5.939624e-02	ci left: 3.933762e-03	ci right 4.175477e-03	k: 4337	n:1070000
Cons ci ratio: 1.043995e-01	ci left: 1.247176e-03	ci right 1.385453e-03	k: 1407	n:1070000
KS ci ratio: 2.258966e-03	ci left: 7.369936e-01	ci right 7.386612e-01	k: 789476	n:1070000
ZNF540   1070000 perm   596 sec   (1795 perm/sec)   p_kst 7.378280e-01   p_cons 1.314953e-03   p_joint 4.053271e-03

Joint ci ratio: 5.956302e-02	ci left: 3.875443e-03	ci right 4.114267e-03	k: 4313	n:1080000
Cons ci ratio: 1.035929e-01	ci left: 1.255469e-03	ci right 1.393524e-03	k: 1429	n:1080000
KS ci ratio: 2.248485e-03	ci left: 7.369972e-01	ci right 7.386571e-01	k: 796854	n:1080000
ZNF540   1080000 perm   605 sec   (1784 perm/sec)   p_kst 7.378278e-01   p_cons 1.323148e-03   p_joint 3.993519e-03

Joint ci ratio: 5.925463e-02	ci left: 3.880560e-03	ci right 4.118418e-03	k: 4358	n:1090000
Cons ci ratio: 1.030181e-01	ci left: 1.258250e-03	ci right 1.395798e-03	k: 1445	n:1090000
KS ci ratio: 2.238265e-03	ci left: 7.369806e-01	ci right 7.386329e-01	k: 804210	n:1090000
ZNF540   1090000 perm   615 sec   (1773 perm/sec)   p_kst 7.378073e-01   p_cons 1.325688e-03   p_joint 3.998165e-03

Joint ci ratio: 5.907232e-02	ci left: 3.869463e-03	ci right 4.105887e-03	k: 4385	n:1100000
Cons ci ratio: 1.026639e-01	ci left: 1.255669e-03	ci right 1.392433e-03	k: 1455	n:1100000
KS ci ratio: 2.227707e-03	ci left: 7.370471e-01	ci right 7.386917e-01	k: 811657	n:1100000
ZNF540   1100000 perm   624 sec   (1762 perm/sec)   p_kst 7.378700e-01   p_cons 1.322727e-03   p_joint 3.986364e-03

Joint ci ratio: 5.875814e-02	ci left: 3.876322e-03	ci right 4.111863e-03	k: 4432	n:1110000
Cons ci ratio: 1.022783e-01	ci left: 1.254012e-03	ci right 1.390053e-03	k: 1466	n:1110000
KS ci ratio: 2.217183e-03	ci left: 7.371322e-01	ci right 7.387693e-01	k: 819126	n:1110000
ZNF540   1110000 perm   634 sec   (1752 perm/sec)   p_kst 7.379514e-01   p_cons 1.320721e-03   p_joint 3.992793e-03

Joint ci ratio: 5.497195e-02	ci left: 4.395374e-03	ci right 4.644699e-03	k: 5061	n:1120000
Cons ci ratio: 1.017593e-01	ci left: 1.255867e-03	ci right 1.391376e-03	k: 1481	n:1120000
KS ci ratio: 2.207464e-03	ci left: 7.371006e-01	ci right 7.387303e-01	k: 826466	n:1120000
ZNF540   1120000 perm   643 sec   (1741 perm/sec)   p_kst 7.379161e-01   p_cons 1.322321e-03   p_joint 4.518750e-03

Joint ci ratio: 5.477774e-02	ci left: 4.387898e-03	ci right 4.635892e-03	k: 5097	n:1130000
Cons ci ratio: 1.013499e-01	ci left: 1.255103e-03	ci right 1.389952e-03	k: 1493	n:1130000
KS ci ratio: 2.197600e-03	ci left: 7.371173e-01	ci right 7.387399e-01	k: 833860	n:1130000
ZNF540   1130000 perm   653 sec   (1731 perm/sec)   p_kst 7.379292e-01   p_cons 1.321239e-03   p_joint 4.510619e-03

Joint ci ratio: 5.460159e-02	ci left: 4.377958e-03	ci right 4.624570e-03	k: 5130	n:1140000
Cons ci ratio: 1.009789e-01	ci left: 1.253498e-03	ci right 1.387653e-03	k: 1504	n:1140000
KS ci ratio: 2.187922e-03	ci left: 7.371242e-01	ci right 7.387395e-01	k: 841243	n:1140000
ZNF540   1140000 perm   662 sec   (1721 perm/sec)   p_kst 7.379325e-01   p_cons 1.319298e-03   p_joint 4.500000e-03

Joint ci ratio: 5.435845e-02	ci left: 4.379344e-03	ci right 4.624901e-03	k: 5176	n:1150000
Cons ci ratio: 1.004794e-01	ci left: 1.255313e-03	ci right 1.388958e-03	k: 1519	n:1150000
KS ci ratio: 2.178513e-03	ci left: 7.371056e-01	ci right 7.387140e-01	k: 848597	n:1150000
ZNF540   1150000 perm   672 sec   (1711 perm/sec)   p_kst 7.379104e-01   p_cons 1.320870e-03   p_joint 4.500870e-03

Joint ci ratio: 5.475398e-02	ci left: 4.278662e-03	ci right 4.520374e-03	k: 5102	n:1160000
Cons ci ratio: 1.000524e-01	ci left: 1.255417e-03	ci right 1.388472e-03	k: 1532	n:1160000
KS ci ratio: 2.169156e-03	ci left: 7.370995e-01	ci right 7.387010e-01	k: 855965	n:1160000
ZNF540   1160000 perm   682 sec   (1702 perm/sec)   p_kst 7.379009e-01   p_cons 1.320690e-03   p_joint 4.398276e-03

Joint ci ratio: 5.453541e-02	ci left: 4.276656e-03	ci right 4.517260e-03	k: 5143	n:1170000
Cons ci ratio: 9.953424e-02	ci left: 1.258021e-03	ci right 1.390621e-03	k: 1548	n:1170000
KS ci ratio: 2.159895e-03	ci left: 7.370978e-01	ci right 7.386924e-01	k: 863338	n:1170000
ZNF540   1170000 perm   691 sec   (1692 perm/sec)   p_kst 7.378957e-01   p_cons 1.323077e-03   p_joint 4.395726e-03

Outputting figure to mutsig2_images.part000000000197/ZNF540.6_1999_1170000_0.7379_0.0013231_0.0043957.png
                gene_name: ZNF540
               theta_stop: 0.100 
                    nperm: 1170000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.0013 
      ci_cons_bounds_left: 0.0013 
     ci_cons_bounds_right: 0.0014 
                  p_joint: 0.0044 
     ci_joint_bounds_left: 0.0043 
    ci_joint_bounds_right: 0.0045 

Current progress: 23 percent done.
ZNF548
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.941686e-02	ci left: 1.539442e-01	ci right 1.684538e-01	k: 1611	n:10000
Cons ci ratio: 5.677757e-02	ci left: 3.135397e-01	ci right 3.319637e-01	k: 3227	n:10000
KS ci ratio: 1.176608e-01	ci left: 9.399250e-02	ci right 1.058417e-01	k: 998	n:10000
ZNF548   10000 perm   2 sec   (5746 perm/sec)   p_kst 9.980000e-02   p_cons 3.227000e-01   p_joint 1.611000e-01

Joint ci ratio: 6.937729e-02	ci left: 1.328538e-01	ci right 1.424518e-01	k: 2752	n:20000
Cons ci ratio: 4.021682e-02	ci left: 3.155257e-01	ci right 3.285261e-01	k: 6440	n:20000
KS ci ratio: 8.364291e-02	ci left: 9.479621e-02	ci right 1.031208e-01	k: 1978	n:20000
ZNF548   20000 perm   4 sec   (5191 perm/sec)   p_kst 9.890000e-02   p_cons 3.220000e-01   p_joint 1.376000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF548.6_1654_20000_0.0989_0.322_0.1376.png
                gene_name: ZNF548
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.099 
        ci_ks_bounds_left: 0.095 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 25 percent done.
ZNF429
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.015846e-01	ci left: 1.229780e-01	ci right 1.362386e-01	k: 1295	n:10000
Cons ci ratio: 2.619358e-02	ci left: 6.821411e-01	ci right 7.003474e-01	k: 6913	n:10000
KS ci ratio: 1.409374e-01	ci left: 6.671876e-02	ci right 7.693236e-02	k: 717	n:10000
ZNF429   10000 perm   2 sec   (6268 perm/sec)   p_kst 7.170000e-02   p_cons 6.913000e-01   p_joint 1.295000e-01

Joint ci ratio: 6.506634e-02	ci left: 1.485792e-01	ci right 1.586217e-01	k: 3071	n:20000
Cons ci ratio: 1.783937e-02	ci left: 7.007381e-01	ci right 7.134017e-01	k: 14142	n:20000
KS ci ratio: 9.866417e-02	ci left: 6.952973e-02	ci right 7.679495e-02	k: 1462	n:20000
ZNF429   20000 perm   4 sec   (5621 perm/sec)   p_kst 7.310000e-02   p_cons 7.071000e-01   p_joint 1.535500e-01

Outputting figure to mutsig2_images.part000000000197/ZNF429.5_2041_20000_0.0731_0.7071_0.15355.png
                gene_name: ZNF429
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.073 
        ci_ks_bounds_left: 0.070 
       ci_ks_bounds_right: 0.077 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 26 percent done.
ZNF430
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.316256e-02	ci left: 5.730625e-01	ci right 5.924892e-01	k: 5828	n:10000
KS ci ratio: 1.679726e-02	ci left: 8.376546e-01	ci right 8.519439e-01	k: 8449	n:10000
ZNF430   10000 perm   2 sec   (6496 perm/sec)   p_kst 8.449000e-01   p_cons 5.828000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000197/ZNF430.5_1733_10000_0.8449_0.5828_1.png
                gene_name: ZNF430
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 28 percent done.
ZNF431
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.042023e-02	ci left: 4.747605e-01	ci right 4.944485e-01	k: 4846	n:10000
Cons ci ratio: 3.275514e-02	ci left: 5.790813e-01	ci right 5.984670e-01	k: 5888	n:10000
KS ci ratio: 4.319010e-02	ci left: 4.418115e-01	ci right 4.614167e-01	k: 4516	n:10000
ZNF431   10000 perm   2 sec   (5952 perm/sec)   p_kst 4.516000e-01   p_cons 5.888000e-01   p_joint 4.846000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF431.5_1751_10000_0.4516_0.5888_0.4846.png
                gene_name: ZNF431
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 29 percent done.
ZNF434
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.927115e-02	ci left: 2.951909e-01	ci right 3.133232e-01	k: 3042	n:10000
Cons ci ratio: 2.302394e-02	ci left: 7.348207e-01	ci right 7.520373e-01	k: 7435	n:10000
KS ci ratio: 8.843771e-02	ci left: 1.568896e-01	ci right 1.715066e-01	k: 1641	n:10000
ZNF434   10000 perm   2 sec   (6616 perm/sec)   p_kst 1.641000e-01   p_cons 7.435000e-01   p_joint 3.042000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF434.5_1470_10000_0.1641_0.7435_0.3042.png
                gene_name: ZNF434
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 30 percent done.
ZNF441
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.107490e-02	ci left: 3.611229e-01	ci right 3.801525e-01	k: 3706	n:10000
Cons ci ratio: 6.261065e-02	ci left: 2.727001e-01	ci right 2.904273e-01	k: 2815	n:10000
KS ci ratio: 5.624939e-02	ci left: 3.176084e-01	ci right 3.360925e-01	k: 3268	n:10000
ZNF441   10000 perm   2 sec   (6054 perm/sec)   p_kst 3.268000e-01   p_cons 2.815000e-01   p_joint 3.706000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF441.5_2098_10000_0.3268_0.2815_0.3706.png
                gene_name: ZNF441
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 32 percent done.
ZNF442
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.967958e-02	ci left: 2.923162e-01	ci right 3.103997e-01	k: 3013	n:10000
Cons ci ratio: 1.512217e-02	ci left: 8.637614e-01	ci right 8.770220e-01	k: 8705	n:10000
KS ci ratio: 8.698407e-02	ci left: 1.614075e-01	ci right 1.761860e-01	k: 1687	n:10000
ZNF442   10000 perm   2 sec   (6069 perm/sec)   p_kst 1.687000e-01   p_cons 8.705000e-01   p_joint 3.013000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF442.5_1900_10000_0.1687_0.8705_0.3013.png
                gene_name: ZNF442
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 33 percent done.
ZNF443
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.421708e-02	ci left: 5.577214e-01	ci right 5.772393e-01	k: 5675	n:10000
Cons ci ratio: 7.539331e-02	ci left: 2.047140e-01	ci right 2.208536e-01	k: 2127	n:10000
KS ci ratio: 2.210077e-02	ci left: 7.502904e-01	ci right 7.671586e-01	k: 7588	n:10000
ZNF443   10000 perm   2 sec   (5981 perm/sec)   p_kst 7.588000e-01   p_cons 2.127000e-01   p_joint 5.675000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF443.5_2032_10000_0.7588_0.2127_0.5675.png
                gene_name: ZNF443
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 35 percent done.
ZNF451
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.984796e-02	ci left: 1.863882e-01	ci right 2.019904e-01	k: 1941	n:10000
Cons ci ratio: 7.126047e-02	ci left: 2.239532e-01	ci right 2.406030e-01	k: 2322	n:10000
KS ci ratio: 7.487955e-02	ci left: 2.069819e-01	ci right 2.231844e-01	k: 2150	n:10000
ZNF451   10000 perm   2 sec   (5157 perm/sec)   p_kst 2.150000e-01   p_cons 2.322000e-01   p_joint 1.941000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF451.5_3246_10000_0.215_0.2322_0.1941.png
                gene_name: ZNF451
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 36 percent done.
ZNF454
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.653682e-02	ci left: 1.997852e-01	ci right 2.157854e-01	k: 2077	n:10000
Cons ci ratio: 8.720168e-02	ci left: 1.607198e-01	ci right 1.754741e-01	k: 1680	n:10000
KS ci ratio: 5.557882e-02	ci left: 3.228692e-01	ci right 3.414287e-01	k: 3321	n:10000
ZNF454   10000 perm   2 sec   (6226 perm/sec)   p_kst 3.321000e-01   p_cons 1.680000e-01   p_joint 2.077000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF454.5_1585_10000_0.3321_0.168_0.2077.png
                gene_name: ZNF454
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 38 percent done.
ZNF470
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.939738e-02	ci left: 6.305025e-01	ci right 6.494159e-01	k: 6400	n:10000
Cons ci ratio: 7.658334e-02	ci left: 1.995881e-01	ci right 2.155826e-01	k: 2075	n:10000
KS ci ratio: 2.060037e-02	ci left: 7.753971e-01	ci right 7.916375e-01	k: 7836	n:10000
ZNF470   10000 perm   2 sec   (5997 perm/sec)   p_kst 7.836000e-01   p_cons 2.075000e-01   p_joint 6.400000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF470.5_2170_10000_0.7836_0.2075_0.64.png
                gene_name: ZNF470
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 39 percent done.
ZNF473
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.742366e-02	ci left: 5.132551e-01	ci right 5.329314e-01	k: 5231	n:10000
Cons ci ratio: 5.677757e-02	ci left: 3.135397e-01	ci right 3.319637e-01	k: 3227	n:10000
KS ci ratio: 4.226054e-02	ci left: 4.525901e-01	ci right 4.722318e-01	k: 4624	n:10000
ZNF473   10000 perm   2 sec   (6024 perm/sec)   p_kst 4.624000e-01   p_cons 3.227000e-01   p_joint 5.231000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF473.5_2632_10000_0.4624_0.3227_0.5231.png
                gene_name: ZNF473
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 41 percent done.
ZNF493
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.174650e-01	ci left: 9.428457e-02	ci right 1.061495e-01	k: 1001	n:10000
Cons ci ratio: 1.222691e-01	ci left: 8.747398e-02	ci right 9.896426e-02	k: 931	n:10000
KS ci ratio: 7.931618e-02	ci left: 1.884559e-01	ci right 2.041214e-01	k: 1962	n:10000
ZNF493   10000 perm   2 sec   (5884 perm/sec)   p_kst 1.962000e-01   p_cons 9.310000e-02   p_joint 1.001000e-01

Joint ci ratio: 5.966693e-02	ci left: 1.721773e-01	ci right 1.828166e-01	k: 3549	n:20000
Cons ci ratio: 8.447442e-02	ci left: 9.307925e-02	ci right 1.013383e-01	k: 1943	n:20000
KS ci ratio: 5.567144e-02	ci left: 1.930901e-01	ci right 2.041976e-01	k: 3972	n:20000
ZNF493   20000 perm   4 sec   (5338 perm/sec)   p_kst 1.986000e-01   p_cons 9.715000e-02   p_joint 1.774500e-01

Outputting figure to mutsig2_images.part000000000197/ZNF493.5_2404_20000_0.1986_0.09715_0.17745.png
                gene_name: ZNF493
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.097 
      ci_cons_bounds_left: 0.093 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 42 percent done.
ZNF518B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.134726e-02	ci left: 6.002590e-01	ci right 6.194770e-01	k: 6099	n:10000
Cons ci ratio: 2.056393e-02	ci left: 7.760050e-01	ci right 7.922292e-01	k: 7842	n:10000
KS ci ratio: 4.463999e-02	ci left: 4.255526e-01	ci right 4.450851e-01	k: 4353	n:10000
ZNF518B   10000 perm   2 sec   (5813 perm/sec)   p_kst 4.353000e-01   p_cons 7.842000e-01   p_joint 6.099000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF518B.5_3229_10000_0.4353_0.7842_0.6099.png
                gene_name: ZNF518B
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 43 percent done.
ZNF420
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.049711e-02	ci left: 7.771196e-01	ci right 7.933139e-01	k: 7853	n:10000
Cons ci ratio: 1.143038e-02	ci left: 9.162609e-01	ci right 9.268919e-01	k: 9217	n:10000
KS ci ratio: 3.571888e-02	ci left: 5.364800e-01	ci right 5.560930e-01	k: 5463	n:10000
ZNF420   10000 perm   1 sec   (6692 perm/sec)   p_kst 5.463000e-01   p_cons 9.217000e-01   p_joint 7.853000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF420.4_2079_10000_0.5463_0.9217_0.7853.png
                gene_name: ZNF420
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.79 

Current progress: 45 percent done.
ZNF43
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.073389e-02	ci left: 7.731682e-01	ci right 7.894676e-01	k: 7814	n:10000
Cons ci ratio: 4.021046e-02	ci left: 4.773583e-01	ci right 4.970491e-01	k: 4872	n:10000
KS ci ratio: 1.330863e-02	ci left: 8.905689e-01	ci right 9.025990e-01	k: 8967	n:10000
ZNF43   10000 perm   2 sec   (6193 perm/sec)   p_kst 8.967000e-01   p_cons 4.872000e-01   p_joint 7.814000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF43.4_2446_10000_0.8967_0.4872_0.7814.png
                gene_name: ZNF43
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 46 percent done.
ZNF44
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.767870e-02	ci left: 2.426241e-01	ci right 2.597210e-01	k: 2511	n:10000
Cons ci ratio: 1.368725e-01	ci left: 7.058968e-02	ci right 8.105902e-02	k: 757	n:10000
KS ci ratio: 2.695096e-02	ci left: 6.697486e-01	ci right 6.881471e-01	k: 6790	n:10000
ZNF44   10000 perm   1 sec   (6689 perm/sec)   p_kst 6.790000e-01   p_cons 7.570000e-02   p_joint 2.511000e-01

Joint ci ratio: 4.498915e-02	ci left: 2.689191e-01	ci right 2.813463e-01	k: 5502	n:20000
Cons ci ratio: 9.165060e-02	ci left: 7.994658e-02	ci right 8.767492e-02	k: 1675	n:20000
KS ci ratio: 1.913221e-02	ci left: 6.707704e-01	ci right 6.837781e-01	k: 13546	n:20000
ZNF44   20000 perm   3 sec   (5974 perm/sec)   p_kst 6.773000e-01   p_cons 8.375000e-02   p_joint 2.751000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF44.4_2012_20000_0.6773_0.08375_0.2751.png
                gene_name: ZNF44
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.084 
      ci_cons_bounds_left: 0.080 
     ci_cons_bounds_right: 0.088 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 48 percent done.
ZNF440
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.772737e-01	ci left: 5.108009e-03	ci right 8.389267e-03	k: 66	n:10000
Cons ci ratio: 5.363278e-02	ci left: 3.387587e-01	ci right 3.575298e-01	k: 3481	n:10000
KS ci ratio: 9.230750e-01	ci left: 9.906147e-04	ci right 2.720474e-03	k: 17	n:10000
ZNF440   10000 perm   1 sec   (6775 perm/sec)   p_kst 1.700000e-03   p_cons 3.481000e-01   p_joint 6.600000e-03

Joint ci ratio: 3.910091e-01	ci left: 4.024882e-03	ci right 6.023201e-03	k: 99	n:20000
Cons ci ratio: 3.825637e-02	ci left: 3.376135e-01	ci right 3.508318e-01	k: 6884	n:20000
KS ci ratio: 6.438316e-01	ci left: 1.261006e-03	ci right 2.491096e-03	k: 36	n:20000
ZNF440   20000 perm   3 sec   (6047 perm/sec)   p_kst 1.800000e-03   p_cons 3.442000e-01   p_joint 4.950000e-03

Joint ci ratio: 3.457367e-01	ci left: 3.530325e-03	ci right 5.034838e-03	k: 127	n:30000
Cons ci ratio: 3.000672e-02	ci left: 3.571235e-01	ci right 3.680364e-01	k: 10877	n:30000
KS ci ratio: 5.142149e-01	ci left: 1.439349e-03	ci right 2.460979e-03	k: 57	n:30000
ZNF440   30000 perm   5 sec   (5770 perm/sec)   p_kst 1.900000e-03   p_cons 3.625667e-01   p_joint 4.233333e-03

Joint ci ratio: 2.086115e-01	ci left: 7.836928e-03	ci right 9.685449e-03	k: 349	n:40000
Cons ci ratio: 2.593885e-02	ci left: 3.587090e-01	ci right 3.681609e-01	k: 14537	n:40000
KS ci ratio: 4.615547e-01	ci left: 1.386542e-03	ci right 2.238401e-03	k: 71	n:40000
ZNF440   40000 perm   7 sec   (5578 perm/sec)   p_kst 1.775000e-03   p_cons 3.634250e-01   p_joint 8.725000e-03

Joint ci ratio: 2.019369e-01	ci left: 6.724472e-03	ci right 8.253545e-03	k: 373	n:50000
Cons ci ratio: 2.405410e-02	ci left: 3.427069e-01	ci right 3.510708e-01	k: 17344	n:50000
KS ci ratio: 4.175014e-01	ci left: 1.393896e-03	ci right 2.145847e-03	k: 87	n:50000
ZNF440   50000 perm   9 sec   (5422 perm/sec)   p_kst 1.740000e-03   p_cons 3.468800e-01   p_joint 7.460000e-03

Joint ci ratio: 1.955902e-01	ci left: 5.999434e-03	ci right 7.315634e-03	k: 398	n:60000
Cons ci ratio: 2.122482e-02	ci left: 3.585854e-01	ci right 3.662946e-01	k: 21746	n:60000
KS ci ratio: 3.916699e-01	ci left: 1.341235e-03	ci right 2.008455e-03	k: 99	n:60000
ZNF440   60000 perm   11 sec   (5283 perm/sec)   p_kst 1.650000e-03   p_cons 3.624333e-01   p_joint 6.633333e-03

Joint ci ratio: 1.519800e-01	ci left: 8.698405e-03	ci right 1.014270e-02	k: 658	n:70000
Cons ci ratio: 2.033839e-02	ci left: 3.431594e-01	ci right 3.502247e-01	k: 24268	n:70000
KS ci ratio: 3.560530e-01	ci left: 1.421511e-03	ci right 2.049521e-03	k: 120	n:70000
ZNF440   70000 perm   14 sec   (5172 perm/sec)   p_kst 1.714286e-03   p_cons 3.466857e-01   p_joint 9.400000e-03

Joint ci ratio: 1.853071e-01	ci left: 5.046945e-03	ci right 6.089404e-03	k: 444	n:80000
Cons ci ratio: 1.831381e-02	ci left: 3.608018e-01	ci right 3.674830e-01	k: 29131	n:80000
KS ci ratio: 3.346192e-01	ci left: 1.426492e-03	ci right 2.010597e-03	k: 136	n:80000
ZNF440   80000 perm   16 sec   (5056 perm/sec)   p_kst 1.700000e-03   p_cons 3.641375e-01   p_joint 5.550000e-03

Joint ci ratio: 1.577863e-01	ci left: 6.273482e-03	ci right 7.358672e-03	k: 612	n:90000
Cons ci ratio: 1.725793e-02	ci left: 3.612214e-01	ci right 3.675207e-01	k: 32793	n:90000
KS ci ratio: 3.135773e-01	ci left: 1.461951e-03	ci right 2.015403e-03	k: 155	n:90000
ZNF440   90000 perm   18 sec   (4929 perm/sec)   p_kst 1.722222e-03   p_cons 3.643667e-01   p_joint 6.800000e-03

Joint ci ratio: 1.551880e-01	ci left: 5.847809e-03	ci right 6.841151e-03	k: 633	n:100000
Cons ci ratio: 1.635387e-02	ci left: 3.619053e-01	ci right 3.678826e-01	k: 36489	n:100000
KS ci ratio: 2.995120e-01	ci left: 1.454223e-03	ci right 1.975362e-03	k: 170	n:100000
ZNF440   100000 perm   21 sec   (4836 perm/sec)   p_kst 1.700000e-03   p_cons 3.648900e-01   p_joint 6.330000e-03

Joint ci ratio: 1.286259e-01	ci left: 7.833907e-03	ci right 8.919526e-03	k: 920	n:110000
Cons ci ratio: 1.614045e-02	ci left: 3.462280e-01	ci right 3.518708e-01	k: 38395	n:110000
KS ci ratio: 2.856497e-01	ci left: 1.465231e-03	ci right 1.961633e-03	k: 187	n:110000
ZNF440   110000 perm   23 sec   (4750 perm/sec)   p_kst 1.700000e-03   p_cons 3.490455e-01   p_joint 8.363636e-03

Joint ci ratio: 9.065676e-02	ci left: 1.464568e-02	ci right 1.604455e-02	k: 1840	n:120000
Cons ci ratio: 1.545119e-02	ci left: 3.464108e-01	ci right 3.518132e-01	k: 41893	n:120000
KS ci ratio: 2.762627e-01	ci left: 1.443829e-03	ci right 1.914113e-03	k: 200	n:120000
ZNF440   120000 perm   26 sec   (4669 perm/sec)   p_kst 1.666667e-03   p_cons 3.491083e-01   p_joint 1.533333e-02

Joint ci ratio: 9.019073e-02	ci left: 1.367666e-02	ci right 1.497590e-02	k: 1861	n:130000
Cons ci ratio: 1.483552e-02	ci left: 3.468078e-01	ci right 3.519989e-01	k: 45422	n:130000
KS ci ratio: 2.646648e-01	ci left: 1.461844e-03	ci right 1.914696e-03	k: 218	n:130000
ZNF440   130000 perm   28 sec   (4593 perm/sec)   p_kst 1.676923e-03   p_cons 3.494000e-01   p_joint 1.431538e-02

Joint ci ratio: 9.232004e-02	ci left: 1.212696e-02	ci right 1.330764e-02	k: 1779	n:140000
Cons ci ratio: 1.429027e-02	ci left: 3.470804e-01	ci right 3.520830e-01	k: 48941	n:140000
KS ci ratio: 2.533463e-01	ci left: 1.491016e-03	ci right 1.930035e-03	k: 238	n:140000
ZNF440   140000 perm   31 sec   (4512 perm/sec)   p_kst 1.700000e-03   p_cons 3.495786e-01   p_joint 1.270714e-02

Joint ci ratio: 9.389301e-02	ci left: 1.094703e-02	ci right 1.203198e-02	k: 1722	n:150000
Cons ci ratio: 1.380528e-02	ci left: 3.471798e-01	ci right 3.520127e-01	k: 52439	n:150000
KS ci ratio: 2.452704e-01	ci left: 1.491619e-03	ci right 1.914683e-03	k: 254	n:150000
ZNF440   150000 perm   34 sec   (4442 perm/sec)   p_kst 1.693333e-03   p_cons 3.495933e-01   p_joint 1.148000e-02

Joint ci ratio: 9.638895e-02	ci left: 9.737832e-03	ci right 1.073004e-02	k: 1636	n:160000
Cons ci ratio: 1.337058e-02	ci left: 3.471321e-01	ci right 3.518109e-01	k: 55915	n:160000
KS ci ratio: 2.370460e-01	ci left: 1.504098e-03	ci right 1.914297e-03	k: 272	n:160000
ZNF440   160000 perm   37 sec   (4371 perm/sec)   p_kst 1.700000e-03   p_cons 3.494687e-01   p_joint 1.022500e-02

Joint ci ratio: 9.603398e-02	ci left: 9.239535e-03	ci right 1.017730e-02	k: 1649	n:170000
Cons ci ratio: 1.297485e-02	ci left: 3.470804e-01	ci right 3.516189e-01	k: 59389	n:170000
KS ci ratio: 2.284206e-01	ci left: 1.531953e-03	ci right 1.932405e-03	k: 293	n:170000
ZNF440   170000 perm   40 sec   (4304 perm/sec)   p_kst 1.723529e-03   p_cons 3.493471e-01   p_joint 9.700000e-03

Joint ci ratio: 9.771738e-02	ci left: 8.427901e-03	ci right 9.299139e-03	k: 1594	n:180000
Cons ci ratio: 1.260890e-02	ci left: 3.471583e-01	ci right 3.515688e-01	k: 62885	n:180000
KS ci ratio: 2.228089e-01	ci left: 1.525468e-03	ci right 1.913085e-03	k: 308	n:180000
ZNF440   180000 perm   42 sec   (4237 perm/sec)   p_kst 1.711111e-03   p_cons 3.493611e-01   p_joint 8.855556e-03

Joint ci ratio: 1.206388e-01	ci left: 5.192803e-03	ci right 5.864525e-03	k: 1049	n:190000
Cons ci ratio: 1.226219e-02	ci left: 3.476027e-01	ci right 3.518966e-01	k: 66452	n:190000
KS ci ratio: 2.392825e-01	ci left: 1.241842e-03	ci right 1.584187e-03	k: 267	n:190000
ZNF440   190000 perm   46 sec   (4174 perm/sec)   p_kst 1.405263e-03   p_cons 3.497474e-01   p_joint 5.521053e-03

Joint ci ratio: 1.196291e-01	ci left: 5.020431e-03	ci right 5.664034e-03	k: 1067	n:200000
Cons ci ratio: 1.195611e-02	ci left: 3.474899e-01	ci right 3.516745e-01	k: 69916	n:200000
KS ci ratio: 2.336827e-01	ci left: 1.240899e-03	ci right 1.573821e-03	k: 280	n:200000
ZNF440   200000 perm   49 sec   (4113 perm/sec)   p_kst 1.400000e-03   p_cons 3.495800e-01   p_joint 5.335000e-03

Joint ci ratio: 1.161436e-01	ci left: 5.081770e-03	ci right 5.712953e-03	k: 1132	n:210000
Cons ci ratio: 1.166783e-02	ci left: 3.475460e-01	ci right 3.516296e-01	k: 73413	n:210000
KS ci ratio: 2.276842e-01	ci left: 1.249111e-03	ci right 1.574425e-03	k: 295	n:210000
ZNF440   210000 perm   52 sec   (4053 perm/sec)   p_kst 1.404762e-03   p_cons 3.495857e-01   p_joint 5.390476e-03

Joint ci ratio: 1.165724e-01	ci left: 4.815436e-03	ci right 5.415898e-03	k: 1124	n:220000
Cons ci ratio: 1.140583e-02	ci left: 3.473439e-01	ci right 3.513328e-01	k: 76854	n:220000
KS ci ratio: 2.210600e-01	ci left: 1.269555e-03	ci right 1.589267e-03	k: 313	n:220000
ZNF440   220000 perm   55 sec   (3996 perm/sec)   p_kst 1.422727e-03   p_cons 3.493364e-01   p_joint 5.109091e-03

Joint ci ratio: 1.178554e-01	ci left: 4.504738e-03	ci right 5.073070e-03	k: 1100	n:230000
Cons ci ratio: 1.115858e-02	ci left: 3.472471e-01	ci right 3.511480e-01	k: 80315	n:230000
KS ci ratio: 2.179610e-01	ci left: 1.251335e-03	ci right 1.561449e-03	k: 322	n:230000
ZNF440   230000 perm   58 sec   (3940 perm/sec)   p_kst 1.400000e-03   p_cons 3.491957e-01   p_joint 4.782609e-03

Joint ci ratio: 1.005602e-01	ci left: 5.975154e-03	ci right 6.611857e-03	k: 1509	n:240000
Cons ci ratio: 1.091463e-02	ci left: 3.476629e-01	ci right 3.514824e-01	k: 83897	n:240000
KS ci ratio: 2.149886e-01	ci left: 1.234662e-03	ci right 1.535920e-03	k: 331	n:240000
ZNF440   240000 perm   62 sec   (3889 perm/sec)   p_kst 1.379167e-03   p_cons 3.495708e-01   p_joint 6.287500e-03

Joint ci ratio: 1.007746e-01	ci left: 5.712713e-03	ci right 6.322824e-03	k: 1503	n:250000
Cons ci ratio: 1.069239e-02	ci left: 3.477745e-01	ci right 3.515170e-01	k: 87411	n:250000
KS ci ratio: 2.096859e-01	ci left: 1.249661e-03	ci right 1.546092e-03	k: 348	n:250000
ZNF440   250000 perm   65 sec   (3834 perm/sec)   p_kst 1.392000e-03   p_cons 3.496440e-01   p_joint 6.012000e-03

Joint ci ratio: 9.901395e-02	ci left: 5.695494e-03	ci right 6.292521e-03	k: 1557	n:260000
Cons ci ratio: 1.047700e-02	ci left: 3.481472e-01	ci right 3.518177e-01	k: 90995	n:260000
KS ci ratio: 2.058868e-01	ci left: 1.248995e-03	ci right 1.539225e-03	k: 361	n:260000
ZNF440   260000 perm   69 sec   (3781 perm/sec)   p_kst 1.388462e-03   p_cons 3.499808e-01   p_joint 5.988462e-03

Joint ci ratio: 9.710039e-02	ci left: 5.708550e-03	ci right 6.294722e-03	k: 1619	n:270000
Cons ci ratio: 1.028700e-02	ci left: 3.479232e-01	ci right 3.515245e-01	k: 94425	n:270000
KS ci ratio: 2.006856e-01	ci left: 1.269526e-03	ci right 1.556162e-03	k: 380	n:270000
ZNF440   270000 perm   72 sec   (3729 perm/sec)   p_kst 1.407407e-03   p_cons 3.497222e-01   p_joint 5.996296e-03

Joint ci ratio: 9.840214e-02	ci left: 5.358293e-03	ci right 5.916300e-03	k: 1577	n:280000
Cons ci ratio: 1.010165e-02	ci left: 3.479548e-01	ci right 3.514911e-01	k: 97922	n:280000
KS ci ratio: 1.978509e-01	ci left: 1.261511e-03	ci right 1.541829e-03	k: 391	n:280000
ZNF440   280000 perm   76 sec   (3674 perm/sec)   p_kst 1.396429e-03   p_cons 3.497214e-01   p_joint 5.632143e-03

Joint ci ratio: 9.715077e-02	ci left: 5.311440e-03	ci right 5.857133e-03	k: 1618	n:290000
Cons ci ratio: 9.926501e-03	ci left: 3.479607e-01	ci right 3.514354e-01	k: 101412	n:290000
KS ci ratio: 1.948911e-01	ci left: 1.257355e-03	ci right 1.532074e-03	k: 403	n:290000
ZNF440   290000 perm   80 sec   (3629 perm/sec)   p_kst 1.389655e-03   p_cons 3.496966e-01   p_joint 5.579310e-03

Joint ci ratio: 9.005191e-02	ci left: 5.993911e-03	ci right 6.562357e-03	k: 1882	n:300000
Cons ci ratio: 9.434712e-03	ci left: 3.635266e-01	ci right 3.669760e-01	k: 109575	n:300000
KS ci ratio: 1.911422e-01	ci left: 1.266200e-03	ci right 1.536912e-03	k: 419	n:300000
ZNF440   300000 perm   84 sec   (3583 perm/sec)   p_kst 1.396667e-03   p_cons 3.652500e-01   p_joint 6.273333e-03

Joint ci ratio: 9.143923e-02	ci left: 5.623964e-03	ci right 6.165981e-03	k: 1826	n:310000
Cons ci ratio: 9.287141e-03	ci left: 3.632630e-01	ci right 3.666556e-01	k: 113137	n:310000
KS ci ratio: 1.889077e-01	ci left: 1.256078e-03	ci right 1.521126e-03	k: 429	n:310000
ZNF440   310000 perm   88 sec   (3538 perm/sec)   p_kst 1.383871e-03   p_cons 3.649581e-01   p_joint 5.890323e-03

Joint ci ratio: 9.234151e-02	ci left: 5.341318e-03	ci right 5.861447e-03	k: 1791	n:320000
Cons ci ratio: 9.145045e-03	ci left: 3.630787e-01	ci right 3.664174e-01	k: 116719	n:320000
KS ci ratio: 1.863263e-01	ci left: 1.252564e-03	ci right 1.512850e-03	k: 441	n:320000
ZNF440   320000 perm   92 sec   (3494 perm/sec)   p_kst 1.378125e-03   p_cons 3.647469e-01   p_joint 5.596875e-03

Joint ci ratio: 9.183552e-02	ci left: 5.238657e-03	ci right 5.745844e-03	k: 1811	n:330000
Cons ci ratio: 9.003387e-03	ci left: 3.632088e-01	ci right 3.664966e-01	k: 120401	n:330000
KS ci ratio: 1.838478e-01	ci left: 1.249286e-03	ci right 1.505053e-03	k: 453	n:330000
ZNF440   330000 perm   96 sec   (3454 perm/sec)   p_kst 1.372727e-03   p_cons 3.648515e-01   p_joint 5.487879e-03

Joint ci ratio: 9.295843e-02	ci left: 4.960998e-03	ci right 5.447494e-03	k: 1768	n:340000
Cons ci ratio: 8.871096e-03	ci left: 3.631758e-01	ci right 3.664148e-01	k: 124030	n:340000
KS ci ratio: 1.820535e-01	ci left: 1.237800e-03	ci right 1.488469e-03	k: 462	n:340000
ZNF440   340000 perm   100 sec   (3412 perm/sec)   p_kst 1.358824e-03   p_cons 3.647941e-01   p_joint 5.200000e-03

Joint ci ratio: 9.406734e-02	ci left: 4.704823e-03	ci right 5.172003e-03	k: 1727	n:350000
Cons ci ratio: 8.747437e-03	ci left: 3.629880e-01	ci right 3.661800e-01	k: 127604	n:350000
KS ci ratio: 1.801197e-01	ci left: 1.229710e-03	ci right 1.475807e-03	k: 472	n:350000
ZNF440   350000 perm   104 sec   (3373 perm/sec)   p_kst 1.348571e-03   p_cons 3.645829e-01   p_joint 4.934286e-03

Joint ci ratio: 9.310426e-02	ci left: 4.671789e-03	ci right 5.130681e-03	k: 1763	n:360000
Cons ci ratio: 8.623427e-03	ci left: 3.630996e-01	ci right 3.662470e-01	k: 131282	n:360000
KS ci ratio: 1.778778e-01	ci left: 1.227391e-03	ci right 1.469638e-03	k: 484	n:360000
ZNF440   360000 perm   108 sec   (3332 perm/sec)   p_kst 1.344444e-03   p_cons 3.646722e-01   p_joint 4.897222e-03

Joint ci ratio: 7.939119e-02	ci left: 6.285975e-03	ci right 6.808285e-03	k: 2421	n:370000
Cons ci ratio: 8.502512e-03	ci left: 3.633162e-01	ci right 3.664211e-01	k: 135001	n:370000
KS ci ratio: 1.644981e-01	ci left: 1.406369e-03	ci right 1.660999e-03	k: 566	n:370000
ZNF440   370000 perm   112 sec   (3292 perm/sec)   p_kst 1.529730e-03   p_cons 3.648676e-01   p_joint 6.543243e-03

Joint ci ratio: 7.845811e-02	ci left: 6.270171e-03	ci right 6.784765e-03	k: 2479	n:380000
Cons ci ratio: 8.394309e-03	ci left: 3.630930e-01	ci right 3.661564e-01	k: 138557	n:380000
KS ci ratio: 1.627853e-01	ci left: 1.399645e-03	ci right 1.650160e-03	k: 578	n:380000
ZNF440   380000 perm   117 sec   (3252 perm/sec)   p_kst 1.521053e-03   p_cons 3.646237e-01   p_joint 6.523684e-03

Joint ci ratio: 7.441926e-02	ci left: 6.801123e-03	ci right 7.329317e-03	k: 2754	n:390000
Cons ci ratio: 8.287058e-03	ci left: 3.630533e-01	ci right 3.660769e-01	k: 142180	n:390000
KS ci ratio: 1.600436e-01	ci left: 1.412968e-03	ci right 1.661199e-03	k: 598	n:390000
ZNF440   390000 perm   121 sec   (3216 perm/sec)   p_kst 1.533333e-03   p_cons 3.645641e-01   p_joint 7.061538e-03

Joint ci ratio: 7.324387e-02	ci left: 6.849493e-03	ci right 7.372685e-03	k: 2843	n:400000
Cons ci ratio: 8.183196e-03	ci left: 3.630507e-01	ci right 3.660363e-01	k: 145817	n:400000
KS ci ratio: 1.573087e-01	ci left: 1.428060e-03	ci right 1.674251e-03	k: 619	n:400000
ZNF440   400000 perm   126 sec   (3182 perm/sec)   p_kst 1.547500e-03   p_cons 3.645425e-01   p_joint 7.107500e-03

Joint ci ratio: 7.235890e-02	ci left: 6.850056e-03	ci right 7.366703e-03	k: 2913	n:410000
Cons ci ratio: 8.084124e-03	ci left: 3.629924e-01	ci right 3.659412e-01	k: 149431	n:410000
KS ci ratio: 1.549517e-01	ci left: 1.437761e-03	ci right 1.681565e-03	k: 638	n:410000
ZNF440   410000 perm   130 sec   (3147 perm/sec)   p_kst 1.556098e-03   p_cons 3.644659e-01   p_joint 7.104878e-03

Joint ci ratio: 7.242766e-02	ci left: 6.675249e-03	ci right 7.179209e-03	k: 2908	n:420000
Cons ci ratio: 7.987414e-03	ci left: 3.630037e-01	ci right 3.659172e-01	k: 153073	n:420000
KS ci ratio: 1.533997e-01	ci left: 1.433287e-03	ci right 1.673674e-03	k: 651	n:420000
ZNF440   420000 perm   135 sec   (3114 perm/sec)   p_kst 1.550000e-03   p_cons 3.644595e-01   p_joint 6.923810e-03

Joint ci ratio: 7.418685e-02	ci left: 6.211756e-03	ci right 6.692605e-03	k: 2773	n:430000
Cons ci ratio: 7.892867e-03	ci left: 3.630868e-01	ci right 3.659662e-01	k: 156746	n:430000
KS ci ratio: 1.516651e-01	ci left: 1.433507e-03	ci right 1.670966e-03	k: 666	n:430000
ZNF440   430000 perm   140 sec   (3082 perm/sec)   p_kst 1.548837e-03   p_cons 3.645256e-01   p_joint 6.448837e-03

Joint ci ratio: 7.330664e-02	ci left: 6.220045e-03	ci right 6.695580e-03	k: 2840	n:440000
Cons ci ratio: 7.803321e-03	ci left: 3.630640e-01	ci right 3.659105e-01	k: 160374	n:440000
KS ci ratio: 1.499880e-01	ci left: 1.433731e-03	ci right 1.668366e-03	k: 681	n:440000
ZNF440   440000 perm   144 sec   (3047 perm/sec)   p_kst 1.547727e-03   p_cons 3.644864e-01   p_joint 6.454545e-03

Joint ci ratio: 7.273447e-02	ci left: 6.179991e-03	ci right 6.648620e-03	k: 2885	n:450000
Cons ci ratio: 7.715571e-03	ci left: 3.631135e-01	ci right 3.659282e-01	k: 164034	n:450000
KS ci ratio: 1.483654e-01	ci left: 1.433960e-03	ci right 1.665867e-03	k: 696	n:450000
ZNF440   450000 perm   149 sec   (3014 perm/sec)   p_kst 1.546667e-03   p_cons 3.645200e-01   p_joint 6.411111e-03

Joint ci ratio: 6.755128e-02	ci left: 7.021818e-03	ci right 7.514854e-03	k: 3342	n:460000
Cons ci ratio: 7.632077e-03	ci left: 3.630785e-01	ci right 3.658623e-01	k: 167656	n:460000
KS ci ratio: 1.466912e-01	ci left: 1.436285e-03	ci right 1.665718e-03	k: 712	n:460000
ZNF440   460000 perm   154 sec   (2982 perm/sec)   p_kst 1.547826e-03   p_cons 3.644696e-01   p_joint 7.265217e-03

Joint ci ratio: 6.733375e-02	ci left: 6.918424e-03	ci right 7.402575e-03	k: 3364	n:470000
Cons ci ratio: 7.551409e-03	ci left: 3.630345e-01	ci right 3.657884e-01	k: 171273	n:470000
KS ci ratio: 1.448735e-01	ci left: 1.442627e-03	ci right 1.669971e-03	k: 730	n:470000
ZNF440   470000 perm   159 sec   (2953 perm/sec)   p_kst 1.553191e-03   p_cons 3.644106e-01   p_joint 7.157447e-03

Joint ci ratio: 6.741956e-02	ci left: 6.757886e-03	ci right 7.231428e-03	k: 3356	n:480000
Cons ci ratio: 7.472003e-03	ci left: 3.630695e-01	ci right 3.657946e-01	k: 174927	n:480000
KS ci ratio: 1.433135e-01	ci left: 1.444704e-03	ci right 1.669714e-03	k: 746	n:480000
ZNF440   480000 perm   164 sec   (2925 perm/sec)   p_kst 1.554167e-03   p_cons 3.644312e-01   p_joint 6.991667e-03

Joint ci ratio: 6.678635e-02	ci left: 6.748389e-03	ci right 7.216653e-03	k: 3420	n:490000
Cons ci ratio: 7.394529e-03	ci left: 3.631359e-01	ci right 3.658331e-01	k: 178597	n:490000
KS ci ratio: 1.418029e-01	ci left: 1.446709e-03	ci right 1.669455e-03	k: 762	n:490000
ZNF440   490000 perm   169 sec   (2895 perm/sec)   p_kst 1.555102e-03   p_cons 3.644837e-01   p_joint 6.979592e-03

Joint ci ratio: 6.741895e-02	ci left: 6.489507e-03	ci right 6.944238e-03	k: 3357	n:500000
Cons ci ratio: 7.321185e-03	ci left: 3.630878e-01	ci right 3.657578e-01	k: 182211	n:500000
KS ci ratio: 1.403390e-01	ci left: 1.448646e-03	ci right 1.669195e-03	k: 778	n:500000
ZNF440   500000 perm   174 sec   (2865 perm/sec)   p_kst 1.556000e-03   p_cons 3.644220e-01   p_joint 6.714000e-03

Joint ci ratio: 6.824659e-02	ci left: 6.208029e-03	ci right 6.648587e-03	k: 3277	n:510000
Cons ci ratio: 7.250749e-03	ci left: 3.629928e-01	ci right 3.656362e-01	k: 185800	n:510000
KS ci ratio: 1.390071e-01	ci left: 1.448625e-03	ci right 1.666904e-03	k: 793	n:510000
ZNF440   510000 perm   180 sec   (2839 perm/sec)   p_kst 1.554902e-03   p_cons 3.643137e-01   p_joint 6.425490e-03

Joint ci ratio: 6.782528e-02	ci left: 6.166144e-03	ci right 6.600922e-03	k: 3318	n:520000
Cons ci ratio: 7.181173e-03	ci left: 3.629745e-01	ci right 3.655924e-01	k: 189427	n:520000
KS ci ratio: 1.377978e-01	ci left: 1.446757e-03	ci right 1.662703e-03	k: 807	n:520000
ZNF440   520000 perm   185 sec   (2810 perm/sec)   p_kst 1.551923e-03   p_cons 3.642827e-01   p_joint 6.380769e-03

Joint ci ratio: 6.791180e-02	ci left: 6.034949e-03	ci right 6.461041e-03	k: 3310	n:530000
Cons ci ratio: 7.115418e-03	ci left: 3.628364e-01	ci right 3.654292e-01	k: 192990	n:530000
KS ci ratio: 1.353879e-01	ci left: 1.472309e-03	ci right 1.687916e-03	k: 836	n:530000
ZNF440   530000 perm   191 sec   (2782 perm/sec)   p_kst 1.577358e-03   p_cons 3.641321e-01   p_joint 6.245283e-03

Joint ci ratio: 6.762863e-02	ci left: 5.974158e-03	ci right 6.394130e-03	k: 3338	n:540000
Cons ci ratio: 7.047235e-03	ci left: 3.629793e-01	ci right 3.655481e-01	k: 196702	n:540000
KS ci ratio: 1.342698e-01	ci left: 1.470095e-03	ci right 1.683458e-03	k: 850	n:540000
ZNF440   540000 perm   196 sec   (2756 perm/sec)   p_kst 1.574074e-03   p_cons 3.642630e-01   p_joint 6.181481e-03

Joint ci ratio: 6.873891e-02	ci left: 5.676065e-03	ci right 6.081893e-03	k: 3232	n:550000
Cons ci ratio: 6.982619e-03	ci left: 3.630080e-01	ci right 3.655534e-01	k: 200354	n:550000
KS ci ratio: 1.325664e-01	ci left: 1.482031e-03	ci right 1.694183e-03	k: 872	n:550000
ZNF440   550000 perm   201 sec   (2731 perm/sec)   p_kst 1.585455e-03   p_cons 3.642800e-01   p_joint 5.876364e-03

Joint ci ratio: 6.309935e-02	ci left: 6.628604e-03	ci right 7.062236e-03	k: 3832	n:560000
Cons ci ratio: 6.921189e-03	ci left: 3.629395e-01	ci right 3.654619e-01	k: 203952	n:560000
KS ci ratio: 1.315906e-01	ci left: 1.478014e-03	ci right 1.687911e-03	k: 885	n:560000
ZNF440   560000 perm   207 sec   (2706 perm/sec)   p_kst 1.580357e-03   p_cons 3.642000e-01   p_joint 6.842857e-03

Joint ci ratio: 6.330299e-02	ci left: 6.470856e-03	ci right 6.895584e-03	k: 3808	n:570000
Cons ci ratio: 6.859533e-03	ci left: 3.629962e-01	ci right 3.654964e-01	k: 207620	n:570000
KS ci ratio: 1.306361e-01	ci left: 1.474142e-03	ci right 1.681854e-03	k: 898	n:570000
ZNF440   570000 perm   213 sec   (2680 perm/sec)   p_kst 1.575439e-03   p_cons 3.642456e-01   p_joint 6.680702e-03

Joint ci ratio: 6.283513e-02	ci left: 6.456014e-03	ci right 6.876522e-03	k: 3865	n:580000
Cons ci ratio: 6.800205e-03	ci left: 3.630028e-01	ci right 3.654814e-01	k: 211260	n:580000
KS ci ratio: 1.297732e-01	ci left: 1.468742e-03	ci right 1.674220e-03	k: 910	n:580000
ZNF440   580000 perm   219 sec   (2654 perm/sec)   p_kst 1.568966e-03   p_cons 3.642414e-01   p_joint 6.663793e-03

Joint ci ratio: 6.347817e-02	ci left: 6.218119e-03	ci right 6.627428e-03	k: 3788	n:590000
Cons ci ratio: 6.740811e-03	ci left: 3.631176e-01	ci right 3.655752e-01	k: 214964	n:590000
KS ci ratio: 1.285096e-01	ci left: 1.473371e-03	ci right 1.677336e-03	k: 928	n:590000
ZNF440   590000 perm   224 sec   (2629 perm/sec)   p_kst 1.572881e-03   p_cons 3.643458e-01   p_joint 6.420339e-03

Joint ci ratio: 6.457987e-02	ci left: 5.906175e-03	ci right 6.301950e-03	k: 3661	n:600000
Cons ci ratio: 6.684461e-03	ci left: 3.631238e-01	ci right 3.655608e-01	k: 218605	n:600000
KS ci ratio: 1.278241e-01	ci left: 1.464946e-03	ci right 1.666582e-03	k: 938	n:600000
ZNF440   600000 perm   230 sec   (2605 perm/sec)   p_kst 1.563333e-03   p_cons 3.643417e-01   p_joint 6.101667e-03

Joint ci ratio: 6.448575e-02	ci left: 5.827087e-03	ci right 6.216971e-03	k: 3672	n:610000
Cons ci ratio: 6.630627e-03	ci left: 3.630512e-01	ci right 3.654681e-01	k: 222198	n:610000
KS ci ratio: 1.264178e-01	ci left: 1.474263e-03	ci right 1.674781e-03	k: 959	n:610000
ZNF440   610000 perm   236 sec   (2581 perm/sec)   p_kst 1.572131e-03   p_cons 3.642590e-01   p_joint 6.019672e-03

Joint ci ratio: 6.154077e-02	ci left: 6.301473e-03	ci right 6.703159e-03	k: 4030	n:620000
Cons ci ratio: 6.575417e-03	ci left: 3.631680e-01	ci right 3.655655e-01	k: 225907	n:620000
KS ci ratio: 1.248657e-01	ci left: 1.487978e-03	ci right 1.687693e-03	k: 983	n:620000
ZNF440   620000 perm   242 sec   (2559 perm/sec)   p_kst 1.585484e-03   p_cons 3.643661e-01   p_joint 6.500000e-03

Joint ci ratio: 6.178352e-02	ci left: 6.152988e-03	ci right 6.546811e-03	k: 3999	n:630000
Cons ci ratio: 6.523976e-03	ci left: 3.631099e-01	ci right 3.654881e-01	k: 229508	n:630000
KS ci ratio: 1.241741e-01	ci left: 1.481276e-03	ci right 1.678909e-03	k: 994	n:630000
ZNF440   630000 perm   248 sec   (2537 perm/sec)   p_kst 1.577778e-03   p_cons 3.642984e-01   p_joint 6.347619e-03

Joint ci ratio: 6.128749e-02	ci left: 6.156847e-03	ci right 6.547641e-03	k: 4064	n:640000
Cons ci ratio: 6.470886e-03	ci left: 3.632567e-01	ci right 3.656164e-01	k: 233239	n:640000
KS ci ratio: 1.231876e-01	ci left: 1.482357e-03	ci right 1.678449e-03	k: 1010	n:640000
ZNF440   640000 perm   254 sec   (2515 perm/sec)   p_kst 1.578125e-03   p_cons 3.644359e-01   p_joint 6.350000e-03

Joint ci ratio: 6.115440e-02	ci left: 6.089389e-03	ci right 6.475032e-03	k: 4082	n:650000
Cons ci ratio: 6.421117e-03	ci left: 3.632514e-01	ci right 3.655929e-01	k: 236874	n:650000
KS ci ratio: 1.223436e-01	ci left: 1.480429e-03	ci right 1.674826e-03	k: 1024	n:650000
ZNF440   650000 perm   261 sec   (2493 perm/sec)   p_kst 1.575385e-03   p_cons 3.644215e-01   p_joint 6.280000e-03

Joint ci ratio: 6.057048e-02	ci left: 6.115003e-03	ci right 6.498441e-03	k: 4161	n:660000
Cons ci ratio: 6.373083e-03	ci left: 3.632024e-01	ci right 3.655260e-01	k: 240480	n:660000
KS ci ratio: 1.211668e-01	ci left: 1.487378e-03	ci right 1.680675e-03	k: 1044	n:660000
ZNF440   660000 perm   267 sec   (2472 perm/sec)   p_kst 1.581818e-03   p_cons 3.643636e-01   p_joint 6.304545e-03

Joint ci ratio: 6.034761e-02	ci left: 6.069299e-03	ci right 6.448422e-03	k: 4192	n:670000
Cons ci ratio: 6.326030e-03	ci left: 3.631610e-01	ci right 3.654671e-01	k: 244090	n:670000
KS ci ratio: 1.203065e-01	ci left: 1.486891e-03	ci right 1.678654e-03	k: 1059	n:670000
ZNF440   670000 perm   273 sec   (2450 perm/sec)   p_kst 1.580597e-03   p_cons 3.643134e-01   p_joint 6.256716e-03

Joint ci ratio: 6.035765e-02	ci left: 5.978588e-03	ci right 6.352108e-03	k: 4191	n:680000
Cons ci ratio: 6.278090e-03	ci left: 3.632619e-01	ci right 3.655511e-01	k: 247796	n:680000
KS ci ratio: 1.193531e-01	ci left: 1.489275e-03	ci right 1.679717e-03	k: 1076	n:680000
ZNF440   680000 perm   280 sec   (2430 perm/sec)   p_kst 1.582353e-03   p_cons 3.644059e-01   p_joint 6.163235e-03

Joint ci ratio: 6.022320e-02	ci left: 5.919057e-03	ci right 6.288006e-03	k: 4210	n:690000
Cons ci ratio: 6.233602e-03	ci left: 3.631832e-01	ci right 3.654556e-01	k: 251380	n:690000
KS ci ratio: 1.186395e-01	ci left: 1.485971e-03	ci right 1.674775e-03	k: 1089	n:690000
ZNF440   690000 perm   286 sec   (2409 perm/sec)   p_kst 1.578261e-03   p_cons 3.643188e-01   p_joint 6.101449e-03

Joint ci ratio: 6.032682e-02	ci left: 5.814792e-03	ci right 6.177886e-03	k: 4196	n:700000
Cons ci ratio: 6.191288e-03	ci left: 3.630140e-01	ci right 3.652699e-01	k: 254899	n:700000
KS ci ratio: 1.176717e-01	ci left: 1.489697e-03	ci right 1.677323e-03	k: 1107	n:700000
ZNF440   700000 perm   293 sec   (2389 perm/sec)   p_kst 1.581429e-03   p_cons 3.641414e-01   p_joint 5.994286e-03

Joint ci ratio: 6.097578e-02	ci left: 5.610811e-03	ci right 5.965070e-03	k: 4108	n:710000
Cons ci ratio: 6.147783e-03	ci left: 3.630031e-01	ci right 3.652430e-01	k: 258527	n:710000
KS ci ratio: 1.166753e-01	ci left: 1.494692e-03	ci right 1.681243e-03	k: 1126	n:710000
ZNF440   710000 perm   300 sec   (2368 perm/sec)   p_kst 1.585915e-03   p_cons 3.641225e-01   p_joint 5.785915e-03

Joint ci ratio: 5.754936e-02	ci left: 6.218468e-03	ci right 6.588298e-03	k: 4609	n:720000
Cons ci ratio: 6.105678e-03	ci left: 3.629551e-01	ci right 3.651793e-01	k: 262128	n:720000
KS ci ratio: 1.157544e-01	ci left: 1.498206e-03	ci right 1.683619e-03	k: 1144	n:720000
ZNF440   720000 perm   307 sec   (2348 perm/sec)   p_kst 1.588889e-03   p_cons 3.640667e-01   p_joint 6.401389e-03

Joint ci ratio: 5.734571e-02	ci left: 6.177836e-03	ci right 6.543906e-03	k: 4642	n:730000
Cons ci ratio: 6.063027e-03	ci left: 3.630152e-01	ci right 3.652242e-01	k: 265807	n:730000
KS ci ratio: 1.151030e-01	ci left: 1.494977e-03	ci right 1.678878e-03	k: 1157	n:730000
ZNF440   730000 perm   313 sec   (2329 perm/sec)   p_kst 1.584932e-03   p_cons 3.641192e-01   p_joint 6.358904e-03

Joint ci ratio: 5.765514e-02	ci left: 6.029074e-03	ci right 6.388321e-03	k: 4593	n:740000
Cons ci ratio: 6.022715e-03	ci left: 3.629617e-01	ci right 3.651556e-01	k: 269403	n:740000
KS ci ratio: 1.142186e-01	ci left: 1.498401e-03	ci right 1.681212e-03	k: 1175	n:740000
ZNF440   740000 perm   320 sec   (2310 perm/sec)   p_kst 1.587838e-03   p_cons 3.640581e-01   p_joint 6.206757e-03

Joint ci ratio: 5.345195e-02	ci left: 6.929638e-03	ci right 7.311517e-03	k: 5339	n:750000
Cons ci ratio: 5.982129e-03	ci left: 3.629922e-01	ci right 3.651715e-01	k: 273061	n:750000
KS ci ratio: 1.132118e-01	ci left: 1.505626e-03	ci right 1.687591e-03	k: 1196	n:750000
ZNF440   750000 perm   327 sec   (2293 perm/sec)   p_kst 1.594667e-03   p_cons 3.640813e-01   p_joint 7.118667e-03

Joint ci ratio: 5.322409e-02	ci left: 6.898174e-03	ci right 7.276650e-03	k: 5385	n:760000
Cons ci ratio: 5.943383e-03	ci left: 3.629418e-01	ci right 3.651066e-01	k: 276658	n:760000
KS ci ratio: 1.125557e-01	ci left: 1.503716e-03	ci right 1.684327e-03	k: 1210	n:760000
ZNF440   760000 perm   334 sec   (2275 perm/sec)   p_kst 1.592105e-03   p_cons 3.640237e-01   p_joint 7.085526e-03

Joint ci ratio: 5.457437e-02	ci left: 6.474156e-03	ci right 6.838662e-03	k: 5124	n:770000
Cons ci ratio: 5.905645e-03	ci left: 3.628720e-01	ci right 3.650226e-01	k: 280239	n:770000
KS ci ratio: 1.120024e-01	ci left: 1.499334e-03	ci right 1.678475e-03	k: 1222	n:770000
ZNF440   770000 perm   341 sec   (2258 perm/sec)   p_kst 1.587013e-03   p_cons 3.639468e-01   p_joint 6.654545e-03

Joint ci ratio: 5.464652e-02	ci left: 6.374706e-03	ci right 6.734102e-03	k: 5111	n:780000
Cons ci ratio: 5.868031e-03	ci left: 3.628501e-01	ci right 3.649868e-01	k: 283856	n:780000
KS ci ratio: 1.112769e-01	ci left: 1.500052e-03	ci right 1.678041e-03	k: 1238	n:780000
ZNF440   780000 perm   348 sec   (2241 perm/sec)   p_kst 1.587179e-03   p_cons 3.639179e-01   p_joint 6.552564e-03

Joint ci ratio: 5.471348e-02	ci left: 6.279023e-03	ci right 6.633472e-03	k: 5099	n:790000
Cons ci ratio: 5.831399e-03	ci left: 3.628073e-01	ci right 3.649304e-01	k: 287456	n:790000
KS ci ratio: 1.108309e-01	ci left: 1.493370e-03	ci right 1.669810e-03	k: 1248	n:790000
ZNF440   790000 perm   355 sec   (2225 perm/sec)   p_kst 1.579747e-03   p_cons 3.638684e-01   p_joint 6.454430e-03

Joint ci ratio: 5.438930e-02	ci left: 6.275744e-03	ci right 6.627844e-03	k: 5160	n:800000
Cons ci ratio: 5.795209e-03	ci left: 3.627844e-01	ci right 3.648941e-01	k: 291071	n:800000
KS ci ratio: 1.102588e-01	ci left: 1.490504e-03	ci right 1.665637e-03	k: 1261	n:800000
ZNF440   800000 perm   362 sec   (2207 perm/sec)   p_kst 1.576250e-03   p_cons 3.638387e-01   p_joint 6.450000e-03

Joint ci ratio: 5.400839e-02	ci left: 6.287169e-03	ci right 6.637362e-03	k: 5233	n:810000
Cons ci ratio: 5.758839e-03	ci left: 3.628299e-01	ci right 3.649266e-01	k: 294741	n:810000
KS ci ratio: 1.094378e-01	ci left: 1.494915e-03	ci right 1.669174e-03	k: 1280	n:810000
ZNF440   810000 perm   370 sec   (2190 perm/sec)   p_kst 1.580247e-03   p_cons 3.638778e-01   p_joint 6.460494e-03

Joint ci ratio: 5.363538e-02	ci left: 6.298324e-03	ci right 6.646640e-03	k: 5306	n:820000
Cons ci ratio: 5.722875e-03	ci left: 3.628963e-01	ci right 3.649803e-01	k: 298429	n:820000
KS ci ratio: 1.085096e-01	ci left: 1.502783e-03	ci right 1.676379e-03	k: 1302	n:820000
ZNF440   820000 perm   377 sec   (2173 perm/sec)   p_kst 1.587805e-03   p_cons 3.639378e-01   p_joint 6.470732e-03

Joint ci ratio: 6.097162e-02	ci left: 4.804295e-03	ci right 5.107609e-03	k: 4112	n:830000
Cons ci ratio: 5.884819e-03	ci left: 3.473376e-01	ci right 3.493888e-01	k: 289141	n:830000
KS ci ratio: 1.077677e-01	ci left: 1.505777e-03	ci right 1.678454e-03	k: 1320	n:830000
ZNF440   830000 perm   385 sec   (2156 perm/sec)   p_kst 1.590361e-03   p_cons 3.483627e-01   p_joint 4.954217e-03

Joint ci ratio: 6.149394e-02	ci left: 4.666206e-03	ci right 4.963415e-03	k: 4043	n:840000
Cons ci ratio: 5.850308e-03	ci left: 3.472954e-01	ci right 3.493343e-01	k: 292584	n:840000
KS ci ratio: 1.072818e-01	ci left: 1.501753e-03	ci right 1.673142e-03	k: 1332	n:840000
ZNF440   840000 perm   393 sec   (2139 perm/sec)   p_kst 1.585714e-03   p_cons 3.483143e-01   p_joint 4.813095e-03

Joint ci ratio: 6.108723e-02	ci left: 4.673866e-03	ci right 4.969524e-03	k: 4097	n:850000
Cons ci ratio: 5.816564e-03	ci left: 3.472412e-01	ci right 3.492680e-01	k: 296016	n:850000
KS ci ratio: 1.063283e-01	ci left: 1.511566e-03	ci right 1.682447e-03	k: 1356	n:850000
ZNF440   850000 perm   400 sec   (2124 perm/sec)   p_kst 1.595294e-03   p_cons 3.482541e-01   p_joint 4.820000e-03

Joint ci ratio: 6.073259e-02	ci left: 4.674482e-03	ci right 4.968403e-03	k: 4145	n:860000
Cons ci ratio: 5.783797e-03	ci left: 3.471570e-01	ci right 3.491719e-01	k: 299421	n:860000
KS ci ratio: 1.056299e-01	ci left: 1.514365e-03	ci right 1.684369e-03	k: 1374	n:860000
ZNF440   860000 perm   408 sec   (2109 perm/sec)   p_kst 1.597674e-03   p_cons 3.481640e-01   p_joint 4.819767e-03

Joint ci ratio: 6.126360e-02	ci left: 4.540379e-03	ci right 4.828452e-03	k: 4074	n:870000
Cons ci ratio: 5.750688e-03	ci left: 3.471449e-01	ci right 3.491481e-01	k: 302887	n:870000
KS ci ratio: 1.050585e-01	ci left: 1.513746e-03	ci right 1.682704e-03	k: 1389	n:870000
ZNF440   870000 perm   416 sec   (2093 perm/sec)   p_kst 1.596552e-03   p_cons 3.481460e-01   p_joint 4.682759e-03

Joint ci ratio: 6.112975e-02	ci left: 4.508923e-03	ci right 4.794353e-03	k: 4092	n:880000
Cons ci ratio: 5.717369e-03	ci left: 3.471944e-01	ci right 3.491862e-01	k: 306407	n:880000
KS ci ratio: 1.043847e-01	ci left: 1.516463e-03	ci right 1.684572e-03	k: 1407	n:880000
ZNF440   880000 perm   424 sec   (2077 perm/sec)   p_kst 1.598864e-03   p_cons 3.481898e-01   p_joint 4.650000e-03

Joint ci ratio: 6.068610e-02	ci left: 4.524651e-03	ci right 4.808925e-03	k: 4152	n:890000
Cons ci ratio: 5.684496e-03	ci left: 3.472529e-01	ci right 3.492335e-01	k: 309936	n:890000
KS ci ratio: 1.037966e-01	ci left: 1.516934e-03	ci right 1.684090e-03	k: 1423	n:890000
ZNF440   890000 perm   432 sec   (2062 perm/sec)   p_kst 1.598876e-03   p_cons 3.482427e-01   p_joint 4.665169e-03

Joint ci ratio: 6.094622e-02	ci left: 4.436073e-03	ci right 4.716019e-03	k: 4117	n:900000
Cons ci ratio: 5.652875e-03	ci left: 3.472546e-01	ci right 3.492242e-01	k: 313415	n:900000
KS ci ratio: 1.033983e-01	ci left: 1.511984e-03	ci right 1.677916e-03	k: 1434	n:900000
ZNF440   900000 perm   439 sec   (2048 perm/sec)   p_kst 1.593333e-03   p_cons 3.482389e-01   p_joint 4.574444e-03

Joint ci ratio: 6.212566e-02	ci left: 4.220684e-03	ci right 4.492376e-03	k: 3963	n:910000
Cons ci ratio: 5.620796e-03	ci left: 3.473353e-01	ci right 3.492942e-01	k: 316966	n:910000
KS ci ratio: 1.028621e-01	ci left: 1.511428e-03	ci right 1.676386e-03	k: 1449	n:910000
ZNF440   910000 perm   448 sec   (2033 perm/sec)   p_kst 1.592308e-03   p_cons 3.483143e-01   p_joint 4.354945e-03

Joint ci ratio: 6.179144e-02	ci left: 4.220822e-03	ci right 4.491009e-03	k: 4006	n:920000
Cons ci ratio: 5.589872e-03	ci left: 3.473644e-01	ci right 3.493126e-01	k: 320471	n:920000
KS ci ratio: 1.022643e-01	ci left: 1.513003e-03	ci right 1.677117e-03	k: 1466	n:920000
ZNF440   920000 perm   456 sec   (2019 perm/sec)   p_kst 1.593478e-03   p_cons 3.483380e-01   p_joint 4.354348e-03

Joint ci ratio: 6.147780e-02	ci left: 4.218843e-03	ci right 4.487484e-03	k: 4047	n:930000
Cons ci ratio: 5.559598e-03	ci left: 3.473811e-01	ci right 3.493188e-01	k: 323965	n:930000
KS ci ratio: 1.018834e-01	ci left: 1.508260e-03	ci right 1.671213e-03	k: 1477	n:930000
ZNF440   930000 perm   464 sec   (2004 perm/sec)   p_kst 1.588172e-03   p_cons 3.483495e-01   p_joint 4.351613e-03

Joint ci ratio: 5.831537e-02	ci left: 4.644501e-03	ci right 4.924522e-03	k: 4496	n:940000
Cons ci ratio: 5.530160e-03	ci left: 3.473687e-01	ci right 3.492961e-01	k: 327432	n:940000
KS ci ratio: 1.014725e-01	ci left: 1.504656e-03	ci right 1.666525e-03	k: 1489	n:940000
ZNF440   940000 perm   472 sec   (1991 perm/sec)   p_kst 1.584043e-03   p_cons 3.483319e-01   p_joint 4.782979e-03

Joint ci ratio: 5.808371e-02	ci left: 4.632954e-03	ci right 4.911132e-03	k: 4532	n:950000
Cons ci ratio: 5.501747e-03	ci left: 3.473103e-01	ci right 3.492274e-01	k: 330855	n:950000
KS ci ratio: 1.009992e-01	ci left: 1.503181e-03	ci right 1.664093e-03	k: 1503	n:950000
ZNF440   950000 perm   481 sec   (1977 perm/sec)   p_kst 1.582105e-03   p_cons 3.482684e-01   p_joint 4.770526e-03

Joint ci ratio: 5.774694e-02	ci left: 4.639103e-03	ci right 4.915981e-03	k: 4585	n:960000
Cons ci ratio: 5.473201e-03	ci left: 3.473000e-01	ci right 3.492071e-01	k: 334323	n:960000
KS ci ratio: 1.003670e-01	ci left: 1.506817e-03	ci right 1.667048e-03	k: 1522	n:960000
ZNF440   960000 perm   489 sec   (1963 perm/sec)   p_kst 1.585417e-03   p_cons 3.482531e-01   p_joint 4.776042e-03

Joint ci ratio: 5.802232e-02	ci left: 4.547583e-03	ci right 4.820336e-03	k: 4542	n:970000
Cons ci ratio: 5.445108e-03	ci left: 3.472890e-01	ci right 3.491862e-01	k: 337790	n:970000
KS ci ratio: 9.974662e-02	ci left: 1.510380e-03	ci right 1.669939e-03	k: 1541	n:970000
ZNF440   970000 perm   498 sec   (1949 perm/sec)   p_kst 1.588660e-03   p_cons 3.482371e-01   p_joint 4.682474e-03

Outputting figure to mutsig2_images.part000000000197/ZNF440.4_1804_970000_0.0015887_0.34824_0.0046825.png
                gene_name: ZNF440
               theta_stop: 0.100 
                    nperm: 970000 
                     p_ks: 0.0016 
        ci_ks_bounds_left: 0.0015 
       ci_ks_bounds_right: 0.0017 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.0047 
     ci_joint_bounds_left: 0.0045 
    ci_joint_bounds_right: 0.0048 

Current progress: 49 percent done.
ZNF492
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.825238e-02	ci left: 6.487080e-01	ci right 6.673999e-01	k: 6581	n:10000
KS ci ratio: 8.286976e-03	ci left: 9.531520e-01	ci right 9.611789e-01	k: 9573	n:10000
ZNF492   10000 perm   1 sec   (6883 perm/sec)   p_kst 9.573000e-01   p_cons 6.581000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000197/ZNF492.4_1608_10000_0.9573_0.6581_1.png
                gene_name: ZNF492
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 51 percent done.
ZNF498
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.221968e-01	ci left: 8.757121e-02	ci right 9.906697e-02	k: 932	n:10000
Cons ci ratio: 6.074508e-02	ci left: 2.849825e-01	ci right 3.029377e-01	k: 2939	n:10000
KS ci ratio: 1.528606e-01	ci left: 5.696592e-02	ci right 6.649137e-02	k: 616	n:10000
ZNF498   10000 perm   1 sec   (6699 perm/sec)   p_kst 6.160000e-02   p_cons 2.939000e-01   p_joint 9.320000e-02

Joint ci ratio: 9.111760e-02	ci left: 8.082777e-02	ci right 8.859346e-02	k: 1693	n:20000
Cons ci ratio: 4.340787e-02	ci left: 2.833198e-01	ci right 2.959414e-01	k: 5792	n:20000
KS ci ratio: 1.085134e-01	ci left: 5.791700e-02	ci right 6.461125e-02	k: 1224	n:20000
ZNF498   20000 perm   3 sec   (6042 perm/sec)   p_kst 6.120000e-02   p_cons 2.896000e-01   p_joint 8.465000e-02

Joint ci ratio: 6.620417e-02	ci left: 1.011587e-01	ci right 1.081181e-01	k: 3138	n:30000
Cons ci ratio: 3.424462e-02	ci left: 2.987642e-01	ci right 3.092071e-01	k: 9119	n:30000
KS ci ratio: 8.864005e-02	ci left: 5.848091e-02	ci right 6.393778e-02	k: 1835	n:30000
ZNF498   30000 perm   5 sec   (5789 perm/sec)   p_kst 6.116667e-02   p_cons 3.039667e-01   p_joint 1.046000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF498.4_1655_30000_0.061167_0.30397_0.1046.png
                gene_name: ZNF498
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.061 
        ci_ks_bounds_left: 0.058 
       ci_ks_bounds_right: 0.064 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 52 percent done.
ZNF528
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.947870e-02	ci left: 1.276742e-01	ci right 1.411395e-01	k: 1343	n:10000
Cons ci ratio: 1.895761e-01	ci left: 3.710237e-02	ci right 4.496786e-02	k: 409	n:10000
KS ci ratio: 5.918697e-03	ci left: 9.747193e-01	ci right 9.805979e-01	k: 9778	n:10000
ZNF528   10000 perm   2 sec   (6222 perm/sec)   p_kst 9.778000e-01   p_cons 4.090000e-02   p_joint 1.343000e-01

Joint ci ratio: 7.100076e-02	ci left: 1.275345e-01	ci right 1.369727e-01	k: 2644	n:20000
Cons ci ratio: 1.407181e-01	ci left: 3.471622e-02	ci right 4.001937e-02	k: 746	n:20000
KS ci ratio: 4.233426e-03	ci left: 9.750878e-01	ci right 9.792719e-01	k: 19545	n:20000
ZNF528   20000 perm   4 sec   (5610 perm/sec)   p_kst 9.772500e-01   p_cons 3.730000e-02   p_joint 1.322000e-01

Joint ci ratio: 5.612370e-02	ci left: 1.359272e-01	ci right 1.438094e-01	k: 4195	n:30000
Cons ci ratio: 1.092239e-01	ci left: 3.891389e-02	ci right 4.344218e-02	k: 1234	n:30000
KS ci ratio: 3.571362e-03	ci left: 9.739287e-01	ci right 9.774451e-01	k: 29272	n:30000
ZNF528   30000 perm   6 sec   (5325 perm/sec)   p_kst 9.757333e-01   p_cons 4.113333e-02   p_joint 1.398333e-01

Joint ci ratio: 5.332303e-02	ci left: 1.158422e-01	ci right 1.222133e-01	k: 4760	n:40000
Cons ci ratio: 9.848125e-02	ci left: 3.622063e-02	ci right 3.999680e-02	k: 1523	n:40000
KS ci ratio: 3.122182e-03	ci left: 9.737058e-01	ci right 9.767747e-01	k: 39011	n:40000
ZNF528   40000 perm   8 sec   (5089 perm/sec)   p_kst 9.752750e-01   p_cons 3.807500e-02   p_joint 1.190000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF528.4_1903_40000_0.97528_0.038075_0.119.png
                gene_name: ZNF528
               theta_stop: 0.098 
                    nperm: 40000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.038 
      ci_cons_bounds_left: 0.036 
     ci_cons_bounds_right: 0.040 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 54 percent done.
ZNF532
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.724192e-02	ci left: 6.650151e-01	ci right 6.834832e-01	k: 6743	n:10000
KS ci ratio: 1.528263e-02	ci left: 8.613106e-01	ci right 8.746743e-01	k: 8681	n:10000
ZNF532   10000 perm   2 sec   (5564 perm/sec)   p_kst 8.681000e-01   p_cons 6.743000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000197/ZNF532.4_3938_10000_0.8681_0.6743_1.png
                gene_name: ZNF532
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 55 percent done.
ZNF410
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.702516e-02	ci left: 6.685399e-01	ci right 6.869564e-01	k: 6778	n:10000
KS ci ratio: 3.640872e-02	ci left: 5.269672e-01	ci right 5.466113e-01	k: 5368	n:10000
ZNF410   10000 perm   1 sec   (7121 perm/sec)   p_kst 5.368000e-01   p_cons 6.778000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000197/ZNF410.3_1481_10000_0.5368_0.6778_1.png
                gene_name: ZNF410
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 57 percent done.
ZNF417
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.457605e-02	ci left: 1.396231e-01	ci right 1.535834e-01	k: 1465	n:10000
Cons ci ratio: 4.122974e-02	ci left: 4.648713e-01	ci right 4.845434e-01	k: 4747	n:10000
KS ci ratio: 1.091164e-01	ci left: 1.080293e-01	ci right 1.205964e-01	k: 1142	n:10000
ZNF417   10000 perm   1 sec   (6798 perm/sec)   p_kst 1.142000e-01   p_cons 4.747000e-01   p_joint 1.465000e-01

Joint ci ratio: 6.349847e-02	ci left: 1.549439e-01	ci right 1.651552e-01	k: 3200	n:20000
Cons ci ratio: 2.898137e-02	ci left: 4.707560e-01	ci right 4.846504e-01	k: 9554	n:20000
KS ci ratio: 7.763852e-02	ci left: 1.086438e-01	ci right 1.174690e-01	k: 2260	n:20000
ZNF417   20000 perm   3 sec   (6090 perm/sec)   p_kst 1.130000e-01   p_cons 4.777000e-01   p_joint 1.600000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF417.3_1740_20000_0.113_0.4777_0.16.png
                gene_name: ZNF417
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.17 

Current progress: 58 percent done.
ZNF436
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.304674e-02	ci left: 2.699278e-01	ci right 2.876013e-01	k: 2787	n:10000
Cons ci ratio: 6.304674e-02	ci left: 2.699278e-01	ci right 2.876013e-01	k: 2787	n:10000
KS ci ratio: 4.495916e-02	ci left: 4.220628e-01	ci right 4.415769e-01	k: 4318	n:10000
ZNF436   10000 perm   1 sec   (7002 perm/sec)   p_kst 4.318000e-01   p_cons 2.787000e-01   p_joint 2.787000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF436.3_1425_10000_0.4318_0.2787_0.2787.png
                gene_name: ZNF436
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 59 percent done.
ZNF449
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.801080e-02	ci left: 3.902789e-01	ci right 4.095794e-01	k: 3999	n:10000
Cons ci ratio: 3.494759e-02	ci left: 5.472988e-01	ci right 5.668679e-01	k: 5571	n:10000
KS ci ratio: 5.317518e-02	ci left: 3.426336e-01	ci right 3.614527e-01	k: 3520	n:10000
ZNF449   10000 perm   1 sec   (6775 perm/sec)   p_kst 3.520000e-01   p_cons 5.571000e-01   p_joint 3.999000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF449.3_1573_10000_0.352_0.5571_0.3999.png
                gene_name: ZNF449
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 61 percent done.
ZNF460
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.636922e-02	ci left: 1.633724e-01	ci right 1.782199e-01	k: 1707	n:10000
Cons ci ratio: 1.398082e-02	ci left: 8.808366e-01	ci right 8.933369e-01	k: 8872	n:10000
KS ci ratio: 1.651998e-01	ci left: 4.888186e-02	ci right 5.778061e-02	k: 532	n:10000
ZNF460   10000 perm   1 sec   (6875 perm/sec)   p_kst 5.320000e-02   p_cons 8.872000e-01   p_joint 1.707000e-01

Joint ci ratio: 8.034850e-02	ci left: 1.020608e-01	ci right 1.106540e-01	k: 2126	n:20000
Cons ci ratio: 9.686189e-03	ci left: 8.868025e-01	ci right 8.954835e-01	k: 17824	n:20000
KS ci ratio: 1.168165e-01	ci left: 5.017833e-02	ci right 5.645233e-02	k: 1065	n:20000
ZNF460   20000 perm   3 sec   (6102 perm/sec)   p_kst 5.325000e-02   p_cons 8.912000e-01   p_joint 1.063000e-01

Joint ci ratio: 4.899235e-02	ci left: 1.715405e-01	ci right 1.801890e-01	k: 5275	n:30000
Cons ci ratio: 7.356185e-03	ci left: 9.010844e-01	ci right 9.077704e-01	k: 27134	n:30000
KS ci ratio: 9.650168e-02	ci left: 4.961210e-02	ci right 5.467508e-02	k: 1563	n:30000
ZNF460   30000 perm   5 sec   (5829 perm/sec)   p_kst 5.210000e-02   p_cons 9.044667e-01   p_joint 1.758333e-01

Outputting figure to mutsig2_images.part000000000197/ZNF460.3_1701_30000_0.0521_0.90447_0.17583.png
                gene_name: ZNF460
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.052 
        ci_ks_bounds_left: 0.050 
       ci_ks_bounds_right: 0.055 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 62 percent done.
ZNF467
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.425892e-02	ci left: 5.571200e-01	ci right 5.766410e-01	k: 5669	n:10000
Cons ci ratio: 5.486017e-02	ci left: 3.286278e-01	ci right 3.472667e-01	k: 3379	n:10000
KS ci ratio: 9.335719e-03	ci left: 9.418039e-01	ci right 9.507338e-01	k: 9464	n:10000
ZNF467   10000 perm   1 sec   (6950 perm/sec)   p_kst 9.464000e-01   p_cons 3.379000e-01   p_joint 5.669000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF467.3_1804_10000_0.9464_0.3379_0.5669.png
                gene_name: ZNF467
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 64 percent done.
ZNF468
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.414085e-02	ci left: 8.784825e-01	ci right 8.910923e-01	k: 8849	n:10000
Cons ci ratio: 1.257878e-02	ci left: 9.008303e-01	ci right 9.123316e-01	k: 9067	n:10000
KS ci ratio: 3.466525e-02	ci left: 5.513070e-01	ci right 5.708574e-01	k: 5611	n:10000
ZNF468   10000 perm   1 sec   (6837 perm/sec)   p_kst 5.611000e-01   p_cons 9.067000e-01   p_joint 8.849000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF468.3_1581_10000_0.5611_0.9067_0.8849.png
                gene_name: ZNF468
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 65 percent done.
ZNF471
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.627059e-03	ci left: 9.688927e-01	ci right 9.754284e-01	k: 9723	n:10000
KS ci ratio: 1.285176e-02	ci left: 8.970314e-01	ci right 9.087327e-01	k: 9030	n:10000
ZNF471   10000 perm   2 sec   (6596 perm/sec)   p_kst 9.030000e-01   p_cons 9.723000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000197/ZNF471.3_1897_10000_0.903_0.9723_1.png
                gene_name: ZNF471
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
ZNF48
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.579340e-02	ci left: 4.130914e-01	ci right 4.325536e-01	k: 4228	n:10000
Cons ci ratio: 4.223506e-02	ci left: 4.528895e-01	ci right 4.725322e-01	k: 4627	n:10000
KS ci ratio: 7.921578e-02	ci left: 1.888498e-01	ci right 2.045273e-01	k: 1966	n:10000
ZNF48   10000 perm   1 sec   (7270 perm/sec)   p_kst 1.966000e-01   p_cons 4.627000e-01   p_joint 4.228000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF48.3_1865_10000_0.1966_0.4627_0.4228.png
                gene_name: ZNF48
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 68 percent done.
ZNF488
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.903769e-02	ci left: 4.921509e-01	ci right 5.118480e-01	k: 5020	n:10000
Cons ci ratio: 1.216226e-01	ci left: 8.834910e-02	ci right 9.988860e-02	k: 940	n:10000
KS ci ratio: 2.007721e-02	ci left: 7.841132e-01	ci right 8.001162e-01	k: 7922	n:10000
ZNF488   10000 perm   1 sec   (7347 perm/sec)   p_kst 7.922000e-01   p_cons 9.400000e-02   p_joint 5.020000e-01

Joint ci ratio: 4.169931e-02	ci left: 3.000145e-01	ci right 3.128418e-01	k: 6128	n:20000
Cons ci ratio: 8.898230e-02	ci left: 8.450079e-02	ci right 9.241933e-02	k: 1768	n:20000
KS ci ratio: 1.429563e-02	ci left: 7.841872e-01	ci right 7.955284e-01	k: 15798	n:20000
ZNF488   20000 perm   3 sec   (6378 perm/sec)   p_kst 7.899000e-01   p_cons 8.840000e-02   p_joint 3.064000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF488.3_1027_20000_0.7899_0.0884_0.3064.png
                gene_name: ZNF488
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.088 
      ci_cons_bounds_left: 0.085 
     ci_cons_bounds_right: 0.092 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 70 percent done.
ZNF502
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.888152e-02	ci left: 8.038971e-01	ci right 8.193209e-01	k: 8117	n:10000
Cons ci ratio: 6.041024e-02	ci left: 2.872616e-01	ci right 3.052572e-01	k: 2962	n:10000
KS ci ratio: 4.852541e-03	ci left: 9.824212e-01	ci right 9.872903e-01	k: 9850	n:10000
ZNF502   10000 perm   1 sec   (6712 perm/sec)   p_kst 9.850000e-01   p_cons 2.962000e-01   p_joint 8.117000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF502.3_1643_10000_0.985_0.2962_0.8117.png
                gene_name: ZNF502
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 71 percent done.
ZNF507
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.012086e-02	ci left: 2.296806e-01	ci right 2.464723e-01	k: 2380	n:10000
Cons ci ratio: 4.337237e-03	ci left: 9.856678e-01	ci right 9.900411e-01	k: 9880	n:10000
KS ci ratio: 1.139578e-01	ci left: 9.973948e-02	ci right 1.118912e-01	k: 1057	n:10000
ZNF507   10000 perm   2 sec   (6373 perm/sec)   p_kst 1.057000e-01   p_cons 9.880000e-01   p_joint 2.380000e-01

Joint ci ratio: 4.896280e-02	ci left: 2.367216e-01	ci right 2.486533e-01	k: 4853	n:20000
Cons ci ratio: 3.186942e-03	ci left: 9.853323e-01	ci right 9.885238e-01	k: 19740	n:20000
KS ci ratio: 8.283239e-02	ci left: 9.651357e-02	ci right 1.049029e-01	k: 2013	n:20000
ZNF507   20000 perm   3 sec   (5716 perm/sec)   p_kst 1.006500e-01   p_cons 9.870000e-01   p_joint 2.426500e-01

Outputting figure to mutsig2_images.part000000000197/ZNF507.3_2882_20000_0.10065_0.987_0.24265.png
                gene_name: ZNF507
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.097 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 72 percent done.
ZNF512
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.010390e-02	ci left: 3.700748e-01	ci right 3.891954e-01	k: 3796	n:10000
KS ci ratio: 3.949308e-02	ci left: 4.863528e-01	ci right 5.060494e-01	k: 4962	n:10000
ZNF512   10000 perm   1 sec   (6700 perm/sec)   p_kst 4.962000e-01   p_cons 3.796000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000197/ZNF512.3_1760_10000_0.4962_0.3796_1.png
                gene_name: ZNF512
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 74 percent done.
ZNF513
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.172054e-02	ci left: 9.124500e-01	ci right 9.233051e-01	k: 9180	n:10000
Cons ci ratio: 1.482583e-02	ci left: 8.682565e-01	ci right 8.813243e-01	k: 8749	n:10000
KS ci ratio: 1.613229e-02	ci left: 8.481495e-01	ci right 8.620429e-01	k: 8552	n:10000
ZNF513   10000 perm   1 sec   (7004 perm/sec)   p_kst 8.552000e-01   p_cons 8.749000e-01   p_joint 9.180000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF513.3_1642_10000_0.8552_0.8749_0.918.png
                gene_name: ZNF513
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 75 percent done.
ZNF518A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.253337e-02	ci left: 2.731952e-01	ci right 2.909319e-01	k: 2820	n:10000
Cons ci ratio: 1.626226e-02	ci left: 8.461108e-01	ci right 8.600828e-01	k: 8532	n:10000
KS ci ratio: 1.159281e-01	ci left: 9.662172e-02	ci right 1.086109e-01	k: 1025	n:10000
ZNF518A   10000 perm   2 sec   (5676 perm/sec)   p_kst 1.025000e-01   p_cons 8.532000e-01   p_joint 2.820000e-01

Joint ci ratio: 4.125236e-02	ci left: 3.045875e-01	ci right 3.174675e-01	k: 6220	n:20000
Cons ci ratio: 1.203721e-02	ci left: 8.362121e-01	ci right 8.463885e-01	k: 16827	n:20000
KS ci ratio: 8.240086e-02	ci left: 9.744601e-02	ci right 1.058702e-01	k: 2032	n:20000
ZNF518A   20000 perm   4 sec   (5088 perm/sec)   p_kst 1.016000e-01   p_cons 8.413500e-01   p_joint 3.110000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF518A.3_4455_20000_0.1016_0.84135_0.311.png
                gene_name: ZNF518A
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.097 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 77 percent done.
ZNF543
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.255073e-02	ci left: 1.450154e-01	ci right 1.591879e-01	k: 1520	n:10000
Cons ci ratio: 2.357589e-01	ci left: 2.372311e-02	ci right 3.015646e-02	k: 268	n:10000
KS ci ratio: 3.001256e-02	ci left: 6.208524e-01	ci right 6.398716e-01	k: 6304	n:10000
ZNF543   10000 perm   1 sec   (6891 perm/sec)   p_kst 6.304000e-01   p_cons 2.680000e-02   p_joint 1.520000e-01

Joint ci ratio: 1.096623e-01	ci left: 5.674781e-02	ci right 6.338081e-02	k: 1200	n:20000
Cons ci ratio: 1.779009e-01	ci left: 2.158850e-02	ci right 2.585152e-02	k: 473	n:20000
KS ci ratio: 2.135991e-02	ci left: 6.206561e-01	ci right 6.341069e-01	k: 12548	n:20000
ZNF543   20000 perm   3 sec   (6119 perm/sec)   p_kst 6.274000e-01   p_cons 2.365000e-02   p_joint 6.000000e-02

Joint ci ratio: 8.973847e-02	ci left: 5.711026e-02	ci right 6.250871e-02	k: 1793	n:30000
Cons ci ratio: 1.391621e-01	ci left: 2.397097e-02	ci right 2.758833e-02	k: 772	n:30000
KS ci ratio: 1.732637e-02	ci left: 6.249757e-01	ci right 6.359324e-01	k: 18914	n:30000
ZNF543   30000 perm   5 sec   (5813 perm/sec)   p_kst 6.304667e-01   p_cons 2.573333e-02   p_joint 5.976667e-02

Joint ci ratio: 6.980546e-02	ci left: 7.051846e-02	ci right 7.564372e-02	k: 2922	n:40000
Cons ci ratio: 1.208599e-01	ci left: 2.407424e-02	ci right 2.719514e-02	k: 1024	n:40000
KS ci ratio: 1.511864e-02	ci left: 6.221891e-01	ci right 6.316925e-01	k: 25078	n:40000
ZNF543   40000 perm   7 sec   (5632 perm/sec)   p_kst 6.269500e-01   p_cons 2.560000e-02   p_joint 7.305000e-02

Joint ci ratio: 6.628151e-02	ci left: 6.320887e-02	ci right 6.756176e-02	k: 3268	n:50000
Cons ci ratio: 1.085909e-01	ci left: 2.401904e-02	ci right 2.679643e-02	k: 1269	n:50000
KS ci ratio: 1.354428e-02	ci left: 6.219421e-01	ci right 6.304433e-01	k: 31310	n:50000
ZNF543   50000 perm   9 sec   (5475 perm/sec)   p_kst 6.262000e-01   p_cons 2.538000e-02   p_joint 6.536000e-02

Joint ci ratio: 6.531478e-02	ci left: 5.478059e-02	ci right 5.849577e-02	k: 3397	n:60000
Cons ci ratio: 1.056011e-01	ci left: 2.126321e-02	ci right 2.364996e-02	k: 1346	n:60000
KS ci ratio: 1.236202e-02	ci left: 6.223979e-01	ci right 6.301565e-01	k: 37577	n:60000
ZNF543   60000 perm   11 sec   (5351 perm/sec)   p_kst 6.262833e-01   p_cons 2.243333e-02   p_joint 5.661667e-02

Joint ci ratio: 6.579809e-02	ci left: 4.666709e-02	ci right 4.985620e-02	k: 3377	n:70000
Cons ci ratio: 9.829688e-02	ci left: 2.112125e-02	ci right 2.331860e-02	k: 1554	n:70000
KS ci ratio: 1.144322e-02	ci left: 6.227611e-01	ci right 6.299427e-01	k: 43845	n:70000
ZNF543   70000 perm   13 sec   (5235 perm/sec)   p_kst 6.263571e-01   p_cons 2.220000e-02   p_joint 4.824286e-02

Outputting figure to mutsig2_images.part000000000197/ZNF543.3_1819_70000_0.62636_0.0222_0.048243.png
                gene_name: ZNF543
               theta_stop: 0.098 
                    nperm: 70000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.022 
      ci_cons_bounds_left: 0.021 
     ci_cons_bounds_right: 0.023 
                  p_joint: 0.048 
     ci_joint_bounds_left: 0.047 
    ci_joint_bounds_right: 0.050 

Current progress: 78 percent done.
ZNF416
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.431467e-02	ci left: 4.291426e-01	ci right 4.486930e-01	k: 4389	n:10000
Cons ci ratio: 4.586852e-02	ci left: 4.122941e-01	ci right 4.317514e-01	k: 4220	n:10000
KS ci ratio: 1.293953e-02	ci left: 8.957999e-01	ci right 9.075649e-01	k: 9018	n:10000
ZNF416   10000 perm   1 sec   (6984 perm/sec)   p_kst 9.018000e-01   p_cons 4.220000e-01   p_joint 4.389000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF416.2_1801_10000_0.9018_0.422_0.4389.png
                gene_name: ZNF416
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 80 percent done.
ZNF418
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.184266e-01	ci left: 2.778487e-02	ci right 3.469176e-02	k: 311	n:10000
Cons ci ratio: 2.318040e-01	ci left: 2.457161e-02	ci right 3.110733e-02	k: 277	n:10000
KS ci ratio: 5.900626e-02	ci left: 2.970746e-01	ci right 3.152384e-01	k: 3061	n:10000
ZNF418   10000 perm   1 sec   (7217 perm/sec)   p_kst 3.061000e-01   p_cons 2.770000e-02   p_joint 3.110000e-02

Joint ci ratio: 1.385177e-01	ci left: 3.582747e-02	ci right 4.120776e-02	k: 769	n:20000
Cons ci ratio: 1.619766e-01	ci left: 2.614160e-02	ci right 3.079684e-02	k: 568	n:20000
KS ci ratio: 4.171894e-02	ci left: 2.998157e-01	ci right 3.126407e-01	k: 6124	n:20000
ZNF418   20000 perm   3 sec   (6346 perm/sec)   p_kst 3.062000e-01   p_cons 2.840000e-02   p_joint 3.845000e-02

Joint ci ratio: 9.522378e-02	ci left: 5.091512e-02	ci right 5.603846e-02	k: 1603	n:30000
Cons ci ratio: 1.416262e-01	ci left: 2.313404e-02	ci right 2.669212e-02	k: 746	n:30000
KS ci ratio: 3.415313e-02	ci left: 2.998920e-01	ci right 3.103457e-01	k: 9153	n:30000
ZNF418   30000 perm   5 sec   (6019 perm/sec)   p_kst 3.051000e-01   p_cons 2.486667e-02   p_joint 5.343333e-02

Joint ci ratio: 5.761437e-02	ci left: 1.007287e-01	ci right 1.067290e-01	k: 4148	n:40000
Cons ci ratio: 1.134127e-01	ci left: 2.735298e-02	ci right 3.066587e-02	k: 1159	n:40000
KS ci ratio: 2.971816e-02	ci left: 2.985979e-01	ci right 3.076307e-01	k: 12124	n:40000
ZNF418   40000 perm   7 sec   (5683 perm/sec)   p_kst 3.031000e-01   p_cons 2.897500e-02   p_joint 1.037000e-01

Joint ci ratio: 6.917991e-02	ci left: 5.824876e-02	ci right 6.244247e-02	k: 3016	n:50000
Cons ci ratio: 1.086348e-01	ci left: 2.399958e-02	ci right 2.677590e-02	k: 1268	n:50000
KS ci ratio: 2.657728e-02	ci left: 2.991328e-01	ci right 3.072100e-01	k: 15158	n:50000
ZNF418   50000 perm   9 sec   (5554 perm/sec)   p_kst 3.031600e-01   p_cons 2.536000e-02   p_joint 6.032000e-02

Joint ci ratio: 5.884489e-02	ci left: 6.683658e-02	ci right 7.090524e-02	k: 4131	n:60000
Cons ci ratio: 9.976958e-02	ci left: 2.383049e-02	ci right 2.634907e-02	k: 1504	n:60000
KS ci ratio: 2.422990e-02	ci left: 3.000383e-01	ci right 3.074140e-01	k: 18223	n:60000
ZNF418   60000 perm   11 sec   (5437 perm/sec)   p_kst 3.037167e-01   p_cons 2.506667e-02   p_joint 6.885000e-02

Outputting figure to mutsig2_images.part000000000197/ZNF418.2_2043_60000_0.30372_0.025067_0.06885.png
                gene_name: ZNF418
               theta_stop: 0.100 
                    nperm: 60000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.025 
      ci_cons_bounds_left: 0.024 
     ci_cons_bounds_right: 0.026 
                  p_joint: 0.069 
     ci_joint_bounds_left: 0.067 
    ci_joint_bounds_right: 0.071 

Current progress: 81 percent done.
ZNF439
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.945361e-02	ci left: 4.868526e-01	ci right 5.065494e-01	k: 4967	n:10000
Cons ci ratio: 9.183970e-02	ci left: 1.469770e-01	ci right 1.612251e-01	k: 1540	n:10000
KS ci ratio: 2.805805e-02	ci left: 6.518275e-01	ci right 6.704785e-01	k: 6612	n:10000
ZNF439   10000 perm   1 sec   (7257 perm/sec)   p_kst 6.612000e-01   p_cons 1.540000e-01   p_joint 4.967000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF439.2_1512_10000_0.6612_0.154_0.4967.png
                gene_name: ZNF439
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 83 percent done.
ZNF445
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.587792e-02	ci left: 4.121944e-01	ci right 4.316511e-01	k: 4219	n:10000
KS ci ratio: 1.483936e-02	ci left: 8.680521e-01	ci right 8.811288e-01	k: 8747	n:10000
ZNF445   10000 perm   2 sec   (6416 perm/sec)   p_kst 8.747000e-01   p_cons 4.219000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000197/ZNF445.2_3120_10000_0.8747_0.4219_1.png
                gene_name: ZNF445
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
ZNF446
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.649439e-02	ci left: 2.492482e-01	ci right 2.664931e-01	k: 2578	n:10000
Cons ci ratio: 4.552242e-02	ci left: 4.159818e-01	ci right 4.354615e-01	k: 4257	n:10000
KS ci ratio: 1.242641e-01	ci left: 8.484960e-02	ci right 9.619025e-02	k: 904	n:10000
ZNF446   10000 perm   1 sec   (7255 perm/sec)   p_kst 9.040000e-02   p_cons 4.257000e-01   p_joint 2.578000e-01

Joint ci ratio: 3.936225e-02	ci left: 3.249260e-01	ci right 3.380231e-01	k: 6629	n:20000
Cons ci ratio: 3.208045e-02	ci left: 4.205299e-01	ci right 4.342912e-01	k: 8548	n:20000
KS ci ratio: 8.747182e-02	ci left: 8.724471e-02	ci right 9.527459e-02	k: 1824	n:20000
ZNF446   20000 perm   3 sec   (6432 perm/sec)   p_kst 9.120000e-02   p_cons 4.274000e-01   p_joint 3.314500e-01

Outputting figure to mutsig2_images.part000000000197/ZNF446.2_1377_20000_0.0912_0.4274_0.33145.png
                gene_name: ZNF446
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.091 
        ci_ks_bounds_left: 0.087 
       ci_ks_bounds_right: 0.095 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 86 percent done.
ZNF485
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.387683e-02	ci left: 5.626335e-01	ci right 5.821243e-01	k: 5724	n:10000
Cons ci ratio: 4.637034e-02	ci left: 4.070126e-01	ci right 4.264360e-01	k: 4167	n:10000
KS ci ratio: 5.424083e-02	ci left: 3.336927e-01	ci right 3.523989e-01	k: 3430	n:10000
ZNF485   10000 perm   1 sec   (7646 perm/sec)   p_kst 3.430000e-01   p_cons 4.167000e-01   p_joint 5.724000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF485.2_1342_10000_0.343_0.4167_0.5724.png
                gene_name: ZNF485
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 87 percent done.
ZNF486
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.308130e-03	ci left: 9.421155e-01	ci right 9.510221e-01	k: 9467	n:10000
Cons ci ratio: 1.113507e-02	ci left: 9.200754e-01	ci right 9.304753e-01	k: 9254	n:10000
KS ci ratio: 7.514666e-02	ci left: 2.057986e-01	ci right 2.219684e-01	k: 2138	n:10000
ZNF486   10000 perm   1 sec   (7114 perm/sec)   p_kst 2.138000e-01   p_cons 9.254000e-01   p_joint 9.467000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF486.2_1408_10000_0.2138_0.9254_0.9467.png
                gene_name: ZNF486
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 88 percent done.
ZNF491
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.538035e-02	ci left: 6.955495e-01	ci right 7.135312e-01	k: 7046	n:10000
Cons ci ratio: 2.930177e-02	ci left: 6.320107e-01	ci right 6.509069e-01	k: 6415	n:10000
KS ci ratio: 1.124773e-01	ci left: 1.021764e-01	ci right 1.144528e-01	k: 1082	n:10000
ZNF491   10000 perm   1 sec   (7341 perm/sec)   p_kst 1.082000e-01   p_cons 6.415000e-01   p_joint 7.046000e-01

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 1.936896e-02	ci left: 6.653433e-01	ci right 6.784067e-01	k: 13438	n:20000
KS ci ratio: 7.959678e-02	ci left: 1.038289e-01	ci right 1.124854e-01	k: 2162	n:20000
ZNF491   20000 perm   3 sec   (6401 perm/sec)   p_kst 1.081000e-01   p_cons 6.719000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000197/ZNF491.2_1318_20000_0.1081_0.6719_1.png
                gene_name: ZNF491
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
ZNF500
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.577984e-02	ci left: 3.212809e-01	ci right 3.398179e-01	k: 3305	n:10000
Cons ci ratio: 7.874268e-02	ci left: 1.907209e-01	ci right 2.064550e-01	k: 1985	n:10000
KS ci ratio: 4.841319e-02	ci left: 3.862964e-01	ci right 4.055643e-01	k: 3959	n:10000
ZNF500   10000 perm   1 sec   (7256 perm/sec)   p_kst 3.959000e-01   p_cons 1.985000e-01   p_joint 3.305000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF500.2_1463_10000_0.3959_0.1985_0.3305.png
                gene_name: ZNF500
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 91 percent done.
ZNF506
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.137174e-02	ci left: 3.584380e-01	ci right 3.774390e-01	k: 3679	n:10000
Cons ci ratio: 7.612086e-02	ci left: 2.015594e-01	ci right 2.176102e-01	k: 2095	n:10000
KS ci ratio: 4.093336e-02	ci left: 4.684669e-01	ci right 4.881457e-01	k: 4783	n:10000
ZNF506   10000 perm   1 sec   (7139 perm/sec)   p_kst 4.783000e-01   p_cons 2.095000e-01   p_joint 3.679000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF506.2_1351_10000_0.4783_0.2095_0.3679.png
                gene_name: ZNF506
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 93 percent done.
ZNF512B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.625171e-03	ci left: 9.496057e-01	ci right 9.579274e-01	k: 9539	n:10000
Cons ci ratio: 1.159567e-02	ci left: 9.140975e-01	ci right 9.248566e-01	k: 9196	n:10000
KS ci ratio: 3.028360e-02	ci left: 6.166318e-01	ci right 6.356946e-01	k: 6262	n:10000
ZNF512B   10000 perm   1 sec   (6669 perm/sec)   p_kst 6.262000e-01   p_cons 9.196000e-01   p_joint 9.539000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF512B.2_2743_10000_0.6262_0.9196_0.9539.png
                gene_name: ZNF512B
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 94 percent done.
ZNF514
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.901795e-02	ci left: 2.354100e-01	ci right 2.523395e-01	k: 2438	n:10000
Cons ci ratio: 1.225593e-01	ci left: 8.708509e-02	ci right 9.855338e-02	k: 927	n:10000
KS ci ratio: 3.636482e-02	ci left: 5.275679e-01	ci right 5.472103e-01	k: 5374	n:10000
ZNF514   10000 perm   1 sec   (7692 perm/sec)   p_kst 5.374000e-01   p_cons 9.270000e-02   p_joint 2.438000e-01

Joint ci ratio: 5.204776e-02	ci left: 2.151664e-01	ci right 2.267148e-01	k: 4418	n:20000
Cons ci ratio: 8.345583e-02	ci left: 9.518871e-02	ci right 1.035282e-01	k: 1986	n:20000
KS ci ratio: 2.585290e-02	ci left: 5.278076e-01	ci right 5.416823e-01	k: 10695	n:20000
ZNF514   20000 perm   3 sec   (6668 perm/sec)   p_kst 5.347500e-01   p_cons 9.930000e-02   p_joint 2.209000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF514.2_1215_20000_0.53475_0.0993_0.2209.png
                gene_name: ZNF514
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.099 
      ci_cons_bounds_left: 0.095 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 96 percent done.
ZNF526
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.380295e-02	ci left: 7.217883e-01	ci right 7.392772e-01	k: 7306	n:10000
KS ci ratio: 2.905383e-02	ci left: 6.359324e-01	ci right 6.547828e-01	k: 6454	n:10000
ZNF526   10000 perm   1 sec   (7255 perm/sec)   p_kst 6.454000e-01   p_cons 7.306000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000197/ZNF526.2_2017_10000_0.6454_0.7306_1.png
                gene_name: ZNF526
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
ZNF530
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.969303e-02	ci left: 1.271849e-01	ci right 1.406292e-01	k: 1338	n:10000
Cons ci ratio: 9.480348e-02	ci left: 1.390351e-01	ci right 1.529718e-01	k: 1459	n:10000
KS ci ratio: 5.977892e-02	ci left: 2.916223e-01	ci right 3.096939e-01	k: 3006	n:10000
ZNF530   10000 perm   1 sec   (7090 perm/sec)   p_kst 3.006000e-01   p_cons 1.459000e-01   p_joint 1.338000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF530.2_1812_10000_0.3006_0.1459_0.1338.png
                gene_name: ZNF530
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 99 percent done.
ZNF544
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.192571e-02	ci left: 7.532242e-01	ci right 7.700231e-01	k: 7617	n:10000
KS ci ratio: 2.716754e-02	ci left: 6.662236e-01	ci right 6.846741e-01	k: 6755	n:10000
ZNF544   10000 perm   1 sec   (6962 perm/sec)   p_kst 6.755000e-01   p_cons 7.617000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000197/ZNF544.2_2164_10000_0.6755_0.7617_1.png
                gene_name: ZNF544
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000197
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 197 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1723>
Subject: Job 8004723: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1723>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000198> was used as the working directory.
Started at Sun Nov 11 15:26:57 2012
Results reported at Sun Nov 11 18:20:16 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000198.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000198.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 198  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000198.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  10492.52 sec.
    Max Memory :      4776 MB
    Max Swap   :      7183 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
198
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 198
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 198: processing genes 17824 - 17913
Calculating significance of each gene.
Using projection method.
17824	ZNF550	8.341114e-01
17825	ZNF551	9.238252e-01
17826	ZNF552	1
17827	ZNF554	9.020091e-01
17828	ZNF555	8.048896e-01
17829	ZNF556	3.167774e-01
17830	ZNF557	1.515708e-01
17831	ZNF558	8.222207e-01
17832	ZNF559	1
17833	ZNF560	9.042157e-01
17834	ZNF561	7.447112e-01
17835	ZNF562	1.938266e-01
17836	ZNF563	3.959432e-01
17837	ZNF564	4.448041e-01
17838	ZNF565	4.076095e-01
17839	ZNF566	1.251994e-01
17840	ZNF567	7.655184e-01
17841	ZNF568	5.155680e-01
17842	ZNF569	1.017542e-01
17843	ZNF57	5.739750e-01
17844	ZNF570	8.081611e-02
17845	ZNF571	2.982296e-01
17846	ZNF572	5.621189e-01
17847	ZNF573	7.254833e-01
17848	ZNF574	8.326719e-01
17849	ZNF575	5.929558e-01
17850	ZNF576	1
17851	ZNF577	1
17852	ZNF578	3.546531e-01
17853	ZNF581	5.369228e-01
17854	ZNF582	3.997520e-01
17855	ZNF583	4.587016e-01
17856	ZNF584	7.080241e-01
17857	ZNF585A	7.760300e-02
17858	ZNF585B	3.723951e-01
17859	ZNF586	2.349606e-01
17860	ZNF587	1
17861	ZNF589	1
17862	ZNF592	8.601265e-01
17863	ZNF593	1
17864	ZNF594	1.731847e-01
17865	ZNF595	6.299436e-02
17866	ZNF596	7.731162e-01
17867	ZNF597	1
In gene ZNF598 the following bins exceed PROBCAP:
    LUSC-34-5241-TP	categ 6	N = 1857    n = 1	mu =   1.00e-07
17868	ZNF598	3.245762e-01
17869	ZNF599	2.455281e-01
17870	ZNF600	1.906014e-01
17871	ZNF605	1
17872	ZNF606	5.568837e-01
17873	ZNF607	4.992324e-01
17874	ZNF608	9.585006e-01
17875	ZNF609	8.636910e-01
17876	ZNF610	2.591074e-01
17877	ZNF611	4.454100e-01
17878	ZNF613	3.426699e-01
17879	ZNF614	4.192240e-02
17880	ZNF615	1
17881	ZNF616	4.196773e-02
17882	ZNF618	3.398871e-01
17883	ZNF619	8.797915e-01
17884	ZNF620	7.725751e-01
17885	ZNF621	1
17886	ZNF622	1
17887	ZNF623	2.014962e-01
17888	ZNF624	1
17889	ZNF625	2.013412e-01
17890	ZNF626	5.245115e-01
17891	ZNF627	1
17892	ZNF628	1
17893	ZNF629	1
17894	ZNF630	4.611556e-01
17895	ZNF638	9.989667e-01
17896	ZNF639	8.368792e-01
17897	ZNF641	1
17898	ZNF642	5.825898e-01
17899	ZNF643	8.805132e-01
17900	ZNF644	8.986094e-01
17901	ZNF645	2.430591e-02
17902	ZNF646	9.978975e-01
17903	ZNF648	7.353042e-01
17904	ZNF649	5.469600e-01
17905	ZNF652	9.158138e-01
17906	ZNF653	8.347730e-01
17907	ZNF654	1.781109e-01
17908	ZNF655	8.727648e-01
17909	ZNF658	8.178881e-01
17910	ZNF660	1
17911	ZNF662	6.985003e-01
17912	ZNF664	1.086018e-01
17913	ZNF665	1.138520e-02
Done

Running MutSig 2:
Scatter job 198: processing genes 17824 - 17913
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ZNF560
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.624939e-02	ci left: 3.176084e-01	ci right 3.360925e-01	k: 3268	n:10000
Cons ci ratio: 9.461386e-02	ci left: 1.395251e-01	ci right 1.534815e-01	k: 1464	n:10000
KS ci ratio: 1.584476e-02	ci left: 8.526363e-01	ci right 8.663535e-01	k: 8596	n:10000
ZNF560   10000 perm   2 sec   (5770 perm/sec)   p_kst 8.596000e-01   p_cons 1.464000e-01   p_joint 3.268000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF560.10_2405_10000_0.8596_0.1464_0.3268.png
                gene_name: ZNF560
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 2 percent done.
ZNF626
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.152409e-01	ci left: 9.769325e-02	ci right 1.097387e-01	k: 1036	n:10000
Cons ci ratio: 1.910962e-02	ci left: 8.001410e-01	ci right 8.156792e-01	k: 8080	n:10000
KS ci ratio: 1.895761e-01	ci left: 3.710237e-02	ci right 4.496786e-02	k: 409	n:10000
ZNF626   10000 perm   2 sec   (6370 perm/sec)   p_kst 4.090000e-02   p_cons 8.080000e-01   p_joint 1.036000e-01

Joint ci ratio: 7.916654e-02	ci left: 1.048604e-01	ci right 1.135536e-01	k: 2183	n:20000
Cons ci ratio: 1.355791e-02	ci left: 8.014105e-01	ci right 8.124001e-01	k: 16139	n:20000
KS ci ratio: 1.343958e-01	ci left: 3.805187e-02	ci right 4.358264e-02	k: 815	n:20000
ZNF626   20000 perm   4 sec   (5691 perm/sec)   p_kst 4.075000e-02   p_cons 8.069500e-01   p_joint 1.091500e-01

Joint ci ratio: 6.363020e-02	ci left: 1.087153e-01	ci right 1.158933e-01	k: 3368	n:30000
Cons ci ratio: 1.110127e-02	ci left: 8.015464e-01	ci right 8.105276e-01	k: 24182	n:30000
KS ci ratio: 1.117486e-01	ci left: 3.719416e-02	ci right 4.162894e-02	k: 1181	n:30000
ZNF626   30000 perm   6 sec   (5447 perm/sec)   p_kst 3.936667e-02   p_cons 8.060667e-01   p_joint 1.122667e-01

Joint ci ratio: 5.920317e-02	ci left: 9.584316e-02	ci right 1.017152e-01	k: 3950	n:40000
Cons ci ratio: 1.016403e-02	ci left: 7.840367e-01	ci right 7.920714e-01	k: 31523	n:40000
KS ci ratio: 9.533818e-02	ci left: 3.861352e-02	ci right 4.250354e-02	k: 1621	n:40000
ZNF626   40000 perm   8 sec   (5255 perm/sec)   p_kst 4.052500e-02   p_cons 7.880750e-01   p_joint 9.875000e-02

Outputting figure to mutsig2_images.part000000000198/ZNF626.9_1660_40000_0.040525_0.78807_0.09875.png
                gene_name: ZNF626
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.041 
        ci_ks_bounds_left: 0.039 
       ci_ks_bounds_right: 0.043 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.099 
     ci_joint_bounds_left: 0.096 
    ci_joint_bounds_right: 0.10 

Current progress: 3 percent done.
ZNF665
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.327139e-02	ci left: 7.306776e-01	ci right 7.479828e-01	k: 7394	n:10000
Cons ci ratio: 4.746511e-02	ci left: 3.957559e-01	ci right 4.150992e-01	k: 4054	n:10000
KS ci ratio: 3.183017e-02	ci left: 5.929300e-01	ci right 6.122102e-01	k: 6026	n:10000
ZNF665   10000 perm   2 sec   (6231 perm/sec)   p_kst 6.026000e-01   p_cons 4.054000e-01   p_joint 7.394000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF665.9_2049_10000_0.6026_0.4054_0.7394.png
                gene_name: ZNF665
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 5 percent done.
ZNF646
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.343746e-02	ci left: 8.887237e-01	ci right 9.008452e-01	k: 8949	n:10000
Cons ci ratio: 1.516236e-02	ci left: 8.631486e-01	ci right 8.764352e-01	k: 8699	n:10000
KS ci ratio: 1.823653e-02	ci left: 8.144611e-01	ci right 8.295509e-01	k: 8221	n:10000
ZNF646   10000 perm   2 sec   (5154 perm/sec)   p_kst 8.221000e-01   p_cons 8.699000e-01   p_joint 8.949000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF646.8_5507_10000_0.8221_0.8699_0.8949.png
                gene_name: ZNF646
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 7 percent done.
ZNF578
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.074355e-02	ci left: 9.250294e-01	ci right 9.351183e-01	k: 9302	n:10000
KS ci ratio: 7.374718e-03	ci left: 9.621545e-01	ci right 9.693708e-01	k: 9659	n:10000
ZNF578   10000 perm   2 sec   (6008 perm/sec)   p_kst 9.659000e-01   p_cons 9.302000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000198/ZNF578.7_1785_10000_0.9659_0.9302_1.png
                gene_name: ZNF578
               theta_stop: 0.011 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 8 percent done.
ZNF616
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.117623e-02	ci left: 7.657748e-01	ci right 7.822653e-01	k: 7741	n:10000
Cons ci ratio: 4.854499e-02	ci left: 3.850022e-01	ci right 4.042592e-01	k: 3946	n:10000
KS ci ratio: 2.621813e-02	ci left: 6.817379e-01	ci right 6.999508e-01	k: 6909	n:10000
ZNF616   10000 perm   2 sec   (6003 perm/sec)   p_kst 6.909000e-01   p_cons 3.946000e-01   p_joint 7.741000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF616.7_2358_10000_0.6909_0.3946_0.7741.png
                gene_name: ZNF616
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 10 percent done.
ZNF638
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.048275e-02	ci left: 2.867661e-01	ci right 3.047530e-01	k: 2957	n:10000
Cons ci ratio: 8.636922e-02	ci left: 1.633724e-01	ci right 1.782199e-01	k: 1707	n:10000
KS ci ratio: 3.341548e-02	ci left: 5.693517e-01	ci right 5.888022e-01	k: 5791	n:10000
ZNF638   10000 perm   2 sec   (4789 perm/sec)   p_kst 5.791000e-01   p_cons 1.707000e-01   p_joint 2.957000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF638.7_6045_10000_0.5791_0.1707_0.2957.png
                gene_name: ZNF638
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 11 percent done.
ZNF585A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.839804e-02	ci left: 1.920999e-01	ci right 2.078753e-01	k: 1999	n:10000
Cons ci ratio: 9.715510e-03	ci left: 9.374458e-01	ci right 9.466946e-01	k: 9422	n:10000
KS ci ratio: 1.723172e-01	ci left: 4.494682e-02	ci right 5.351821e-02	k: 491	n:10000
ZNF585A   10000 perm   2 sec   (6345 perm/sec)   p_kst 4.910000e-02   p_cons 9.422000e-01   p_joint 1.999000e-01

Joint ci ratio: 5.994426e-02	ci left: 1.708434e-01	ci right 1.814509e-01	k: 3522	n:20000
Cons ci ratio: 6.484436e-03	ci left: 9.449864e-01	ci right 9.511826e-01	k: 18963	n:20000
KS ci ratio: 1.190752e-01	ci left: 4.833156e-02	ci right 5.449968e-02	k: 1027	n:20000
ZNF585A   20000 perm   4 sec   (5626 perm/sec)   p_kst 5.135000e-02   p_cons 9.481500e-01   p_joint 1.761000e-01

Joint ci ratio: 5.234384e-02	ci left: 1.533616e-01	ci right 1.616382e-01	k: 4724	n:30000
Cons ci ratio: 5.202646e-03	ci left: 9.473026e-01	ci right 9.522765e-01	k: 28495	n:30000
KS ci ratio: 9.823677e-02	ci left: 4.791886e-02	ci right 5.290200e-02	k: 1511	n:30000
ZNF585A   30000 perm   6 sec   (5353 perm/sec)   p_kst 5.036667e-02   p_cons 9.498333e-01   p_joint 1.574667e-01

Outputting figure to mutsig2_images.part000000000198/ZNF585A.6_2157_30000_0.050367_0.94983_0.15747.png
                gene_name: ZNF585A
               theta_stop: 0.098 
                    nperm: 30000 
                     p_ks: 0.050 
        ci_ks_bounds_left: 0.048 
       ci_ks_bounds_right: 0.053 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 13 percent done.
ZNF639
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.777696e-03	ci left: 9.367201e-01	ci right 9.460207e-01	k: 9415	n:10000
KS ci ratio: 6.262554e-03	ci left: 9.719600e-01	ci right 9.781590e-01	k: 9752	n:10000
ZNF639   10000 perm   2 sec   (6549 perm/sec)   p_kst 9.752000e-01   p_cons 9.415000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000198/ZNF639.6_1474_10000_0.9752_0.9415_1.png
                gene_name: ZNF639
               theta_stop: 0.0098 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 15 percent done.
ZNF645
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.873938e-02	ci left: 8.062326e-01	ci right 8.215841e-01	k: 8140	n:10000
Cons ci ratio: 5.031728e-02	ci left: 3.680851e-01	ci right 3.871862e-01	k: 3776	n:10000
KS ci ratio: 1.723077e-02	ci left: 8.307321e-01	ci right 8.452705e-01	k: 8381	n:10000
ZNF645   10000 perm   2 sec   (6086 perm/sec)   p_kst 8.381000e-01   p_cons 3.776000e-01   p_joint 8.140000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF645.6_1282_10000_0.8381_0.3776_0.814.png
                gene_name: ZNF645
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 16 percent done.
ZNF569
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.581216e-02	ci left: 4.128920e-01	ci right 4.323531e-01	k: 4226	n:10000
Cons ci ratio: 3.605153e-02	ci left: 5.318734e-01	ci right 5.515023e-01	k: 5417	n:10000
KS ci ratio: 4.794086e-02	ci left: 3.909759e-01	ci right 4.102820e-01	k: 4006	n:10000
ZNF569   10000 perm   2 sec   (6028 perm/sec)   p_kst 4.006000e-01   p_cons 5.417000e-01   p_joint 4.226000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF569.5_2077_10000_0.4006_0.5417_0.4226.png
                gene_name: ZNF569
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 18 percent done.
ZNF571
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.740117e-02	ci left: 5.135553e-01	ci right 5.332311e-01	k: 5234	n:10000
KS ci ratio: 2.044241e-02	ci left: 7.780316e-01	ci right 7.942014e-01	k: 7862	n:10000
ZNF571   10000 perm   2 sec   (6401 perm/sec)   p_kst 7.862000e-01   p_cons 5.234000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000198/ZNF571.5_1842_10000_0.7862_0.5234_1.png
                gene_name: ZNF571
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 20 percent done.
ZNF592
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.821285e-02	ci left: 1.575769e-01	ci right 1.722188e-01	k: 1648	n:10000
Cons ci ratio: 8.192190e-02	ci left: 1.786127e-01	ci right 1.939705e-01	k: 1862	n:10000
KS ci ratio: 1.057003e-01	ci left: 1.144737e-01	ci right 1.273481e-01	k: 1208	n:10000
ZNF592   10000 perm   2 sec   (4844 perm/sec)   p_kst 1.208000e-01   p_cons 1.862000e-01   p_joint 1.648000e-01

Joint ci ratio: 7.038866e-02	ci left: 1.295043e-01	ci right 1.390023e-01	k: 2684	n:20000
Cons ci ratio: 5.805281e-02	ci left: 1.802328e-01	ci right 1.910587e-01	k: 3712	n:20000
KS ci ratio: 7.389360e-02	ci left: 1.187734e-01	ci right 1.279364e-01	k: 2466	n:20000
ZNF592   20000 perm   4 sec   (4730 perm/sec)   p_kst 1.233000e-01   p_cons 1.856000e-01   p_joint 1.342000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF592.5_3836_20000_0.1233_0.1856_0.1342.png
                gene_name: ZNF592
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 21 percent done.
ZNF594
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.591382e-02	ci left: 5.337760e-01	ci right 5.533986e-01	k: 5436	n:10000
Cons ci ratio: 4.871812e-02	ci left: 3.833100e-01	ci right 4.025524e-01	k: 3929	n:10000
KS ci ratio: 5.250601e-02	ci left: 3.483974e-01	ci right 3.672855e-01	k: 3578	n:10000
ZNF594   10000 perm   2 sec   (6082 perm/sec)   p_kst 3.578000e-01   p_cons 3.929000e-01   p_joint 5.436000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF594.5_2428_10000_0.3578_0.3929_0.5436.png
                gene_name: ZNF594
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 23 percent done.
ZNF595
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.383424e-02	ci left: 3.370699e-01	ci right 3.558196e-01	k: 3464	n:10000
Cons ci ratio: 3.491220e-02	ci left: 5.477998e-01	ci right 5.673666e-01	k: 5576	n:10000
KS ci ratio: 9.371625e-02	ci left: 1.418777e-01	ci right 1.559275e-01	k: 1488	n:10000
ZNF595   10000 perm   2 sec   (5906 perm/sec)   p_kst 1.488000e-01   p_cons 5.576000e-01   p_joint 3.464000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF595.5_1961_10000_0.1488_0.5576_0.3464.png
                gene_name: ZNF595
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 25 percent done.
ZNF600
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.265993e-01	ci left: 1.188149e-02	ci right 1.660771e-02	k: 141	n:10000
Cons ci ratio: 7.677370e-01	ci left: 1.618501e-03	ci right 3.688296e-03	k: 25	n:10000
KS ci ratio: 5.559135e-02	ci left: 3.227699e-01	ci right 3.413280e-01	k: 3320	n:10000
ZNF600   10000 perm   2 sec   (6481 perm/sec)   p_kst 3.320000e-01   p_cons 2.500000e-03   p_joint 1.410000e-02

Joint ci ratio: 3.538073e-01	ci left: 5.022594e-03	ci right 7.224712e-03	k: 121	n:20000
Cons ci ratio: 5.052976e-01	ci left: 2.246412e-03	ci right 3.803657e-03	k: 59	n:20000
KS ci ratio: 3.930903e-02	ci left: 3.255229e-01	ci right 3.386260e-01	k: 6641	n:20000
ZNF600   20000 perm   3 sec   (5739 perm/sec)   p_kst 3.320500e-01   p_cons 2.950000e-03   p_joint 6.050000e-03

Joint ci ratio: 2.123298e-01	ci left: 1.004002e-02	ci right 1.245603e-02	k: 336	n:30000
Cons ci ratio: 3.765164e-01	ci left: 2.923862e-03	ci right 4.308349e-03	k: 107	n:30000
KS ci ratio: 3.227985e-02	ci left: 3.242144e-01	ci right 3.348853e-01	k: 9886	n:30000
ZNF600   30000 perm   6 sec   (5447 perm/sec)   p_kst 3.295333e-01   p_cons 3.566667e-03   p_joint 1.120000e-02

Joint ci ratio: 1.873585e-01	ci left: 9.810223e-03	ci right 1.186172e-02	k: 432	n:40000
Cons ci ratio: 3.183984e-01	ci left: 3.174780e-03	ci right 4.398997e-03	k: 150	n:40000
KS ci ratio: 2.797205e-02	ci left: 3.246696e-01	ci right 3.339052e-01	k: 13171	n:40000
ZNF600   40000 perm   8 sec   (5253 perm/sec)   p_kst 3.292750e-01   p_cons 3.750000e-03   p_joint 1.080000e-02

Joint ci ratio: 1.823269e-01	ci left: 8.324448e-03	ci right 1.001328e-02	k: 457	n:50000
Cons ci ratio: 2.868904e-01	ci left: 3.186808e-03	ci right 4.272065e-03	k: 185	n:50000
KS ci ratio: 2.505525e-02	ci left: 3.245229e-01	ci right 3.327770e-01	k: 16432	n:50000
ZNF600   50000 perm   10 sec   (5124 perm/sec)   p_kst 3.286400e-01   p_cons 3.700000e-03   p_joint 9.140000e-03

Joint ci ratio: 1.533966e-01	ci left: 9.940253e-03	ci right 1.160758e-02	k: 645	n:60000
Cons ci ratio: 2.631995e-01	ci left: 3.198848e-03	ci right 4.183453e-03	k: 220	n:60000
KS ci ratio: 2.292206e-02	ci left: 3.239277e-01	ci right 3.314556e-01	k: 19661	n:60000
ZNF600   60000 perm   12 sec   (4989 perm/sec)   p_kst 3.276833e-01   p_cons 3.666667e-03   p_joint 1.075000e-02

Joint ci ratio: 1.474184e-01	ci left: 9.262376e-03	ci right 1.075009e-02	k: 699	n:70000
Cons ci ratio: 2.460008e-01	ci left: 3.169864e-03	ci right 4.072053e-03	k: 252	n:70000
KS ci ratio: 2.123823e-02	ci left: 3.238668e-01	ci right 3.308332e-01	k: 22914	n:70000
ZNF600   70000 perm   14 sec   (4895 perm/sec)   p_kst 3.273429e-01   p_cons 3.600000e-03   p_joint 9.985714e-03

Joint ci ratio: 1.527732e-01	ci left: 7.538614e-03	ci right 8.797446e-03	k: 652	n:80000
Cons ci ratio: 2.301699e-01	ci left: 3.196818e-03	ci right 4.039811e-03	k: 288	n:80000
KS ci ratio: 1.990358e-02	ci left: 3.232755e-01	ci right 3.297870e-01	k: 26122	n:80000
ZNF600   80000 perm   17 sec   (4797 perm/sec)   p_kst 3.265250e-01   p_cons 3.600000e-03   p_joint 8.150000e-03

Joint ci ratio: 1.166646e-01	ci left: 1.166563e-02	ci right 1.312161e-02	k: 1114	n:90000
Cons ci ratio: 2.294214e-01	ci left: 2.862500e-03	ci right 3.614526e-03	k: 290	n:90000
KS ci ratio: 1.889372e-02	ci left: 3.204771e-01	ci right 3.266009e-01	k: 29118	n:90000
ZNF600   90000 perm   19 sec   (4717 perm/sec)   p_kst 3.235333e-01   p_cons 3.222222e-03   p_joint 1.237778e-02

Joint ci ratio: 1.173783e-01	ci left: 1.038217e-02	ci right 1.168642e-02	k: 1102	n:100000
Cons ci ratio: 2.174236e-01	ci left: 2.887797e-03	ci right 3.601497e-03	k: 323	n:100000
KS ci ratio: 1.795057e-02	ci left: 3.199921e-01	ci right 3.257981e-01	k: 32289	n:100000
ZNF600   100000 perm   22 sec   (4637 perm/sec)   p_kst 3.228900e-01   p_cons 3.230000e-03   p_joint 1.102000e-02

Joint ci ratio: 1.124465e-01	ci left: 1.031245e-02	ci right 1.154990e-02	k: 1201	n:110000
Cons ci ratio: 2.056904e-01	ci left: 2.952444e-03	ci right 3.637794e-03	k: 361	n:110000
KS ci ratio: 1.712802e-02	ci left: 3.198014e-01	ci right 3.253353e-01	k: 35482	n:110000
ZNF600   110000 perm   24 sec   (4563 perm/sec)   p_kst 3.225636e-01   p_cons 3.281818e-03   p_joint 1.091818e-02

Joint ci ratio: 1.012995e-01	ci left: 1.170027e-02	ci right 1.295680e-02	k: 1478	n:120000
Cons ci ratio: 1.818253e-01	ci left: 3.507481e-03	ci right 4.216828e-03	k: 462	n:120000
KS ci ratio: 1.654462e-02	ci left: 3.160721e-01	ci right 3.213533e-01	k: 38245	n:120000
ZNF600   120000 perm   27 sec   (4490 perm/sec)   p_kst 3.187083e-01   p_cons 3.850000e-03   p_joint 1.231667e-02

Joint ci ratio: 1.029440e-01	ci left: 1.046259e-02	ci right 1.160554e-02	k: 1433	n:130000
Cons ci ratio: 1.765721e-01	ci left: 3.443389e-03	ci right 4.117505e-03	k: 490	n:130000
KS ci ratio: 1.592861e-02	ci left: 3.152768e-01	ci right 3.203467e-01	k: 41315	n:130000
ZNF600   130000 perm   29 sec   (4418 perm/sec)   p_kst 3.178077e-01   p_cons 3.769231e-03   p_joint 1.102308e-02

Joint ci ratio: 9.973322e-02	ci left: 1.036965e-02	ci right 1.146504e-02	k: 1527	n:140000
Cons ci ratio: 1.712530e-01	ci left: 3.409218e-03	ci right 4.054462e-03	k: 521	n:140000
KS ci ratio: 1.535707e-02	ci left: 3.151474e-01	ci right 3.200316e-01	k: 44462	n:140000
ZNF600   140000 perm   32 sec   (4349 perm/sec)   p_kst 3.175857e-01   p_cons 3.721429e-03   p_joint 1.090714e-02

Joint ci ratio: 7.752322e-02	ci left: 1.610985e-02	ci right 1.741560e-02	k: 2513	n:150000
Cons ci ratio: 1.648974e-01	ci left: 3.443780e-03	ci right 4.068976e-03	k: 562	n:150000
KS ci ratio: 1.445605e-02	ci left: 3.265690e-01	ci right 3.313309e-01	k: 49342	n:150000
ZNF600   150000 perm   35 sec   (4284 perm/sec)   p_kst 3.289467e-01   p_cons 3.746667e-03   p_joint 1.675333e-02

Joint ci ratio: 8.163531e-02	ci left: 1.362596e-02	ci right 1.479174e-02	k: 2272	n:160000
Cons ci ratio: 1.821108e-01	ci left: 2.624534e-03	ci right 3.156233e-03	k: 461	n:160000
KS ci ratio: 1.400286e-02	ci left: 3.264607e-01	ci right 3.310705e-01	k: 52602	n:160000
ZNF600   160000 perm   38 sec   (4226 perm/sec)   p_kst 3.287625e-01   p_cons 2.881250e-03   p_joint 1.420000e-02

Joint ci ratio: 7.775806e-02	ci left: 1.415633e-02	ci right 1.530736e-02	k: 2503	n:170000
Cons ci ratio: 1.786694e-01	ci left: 2.571245e-03	ci right 3.081239e-03	k: 479	n:170000
KS ci ratio: 1.360048e-02	ci left: 3.260208e-01	ci right 3.304910e-01	k: 55803	n:170000
ZNF600   170000 perm   41 sec   (4166 perm/sec)   p_kst 3.282529e-01   p_cons 2.817647e-03   p_joint 1.472353e-02

Joint ci ratio: 7.831536e-02	ci left: 1.318985e-02	ci right 1.427033e-02	k: 2470	n:180000
Cons ci ratio: 1.735046e-01	ci left: 2.582410e-03	ci right 3.078262e-03	k: 508	n:180000
KS ci ratio: 1.319279e-02	ci left: 3.269015e-01	ci right 3.312484e-01	k: 59233	n:180000
ZNF600   180000 perm   44 sec   (4108 perm/sec)   p_kst 3.290722e-01   p_cons 2.822222e-03   p_joint 1.372222e-02

Joint ci ratio: 7.672436e-02	ci left: 1.303237e-02	ci right 1.407729e-02	k: 2574	n:190000
Cons ci ratio: 1.672120e-01	ci left: 2.643014e-03	ci right 3.130244e-03	k: 547	n:190000
KS ci ratio: 1.284839e-02	ci left: 3.267034e-01	ci right 3.309334e-01	k: 62475	n:190000
ZNF600   190000 perm   47 sec   (4051 perm/sec)   p_kst 3.288158e-01   p_cons 2.878947e-03   p_joint 1.354737e-02

Joint ci ratio: 7.168797e-02	ci left: 1.420166e-02	ci right 1.526248e-02	k: 2945	n:200000
Cons ci ratio: 1.629558e-01	ci left: 2.649874e-03	ci right 3.124716e-03	k: 576	n:200000
KS ci ratio: 1.252820e-02	ci left: 3.265764e-01	ci right 3.306986e-01	k: 65727	n:200000
ZNF600   200000 perm   50 sec   (3996 perm/sec)   p_kst 3.286350e-01   p_cons 2.880000e-03   p_joint 1.472500e-02

Joint ci ratio: 7.207413e-02	ci left: 1.338957e-02	ci right 1.439534e-02	k: 2916	n:210000
Cons ci ratio: 1.579665e-01	ci left: 2.692811e-03	ci right 3.159173e-03	k: 613	n:210000
KS ci ratio: 1.222606e-02	ci left: 3.266339e-01	ci right 3.306566e-01	k: 69015	n:210000
ZNF600   210000 perm   53 sec   (3942 perm/sec)   p_kst 3.286429e-01   p_cons 2.919048e-03   p_joint 1.388571e-02

Joint ci ratio: 7.157678e-02	ci left: 1.296833e-02	ci right 1.393546e-02	k: 2958	n:220000
Cons ci ratio: 1.547257e-01	ci left: 2.683968e-03	ci right 3.138377e-03	k: 639	n:220000
KS ci ratio: 1.194662e-02	ci left: 3.266191e-01	ci right 3.305490e-01	k: 72288	n:220000
ZNF600   220000 perm   57 sec   (3893 perm/sec)   p_kst 3.285818e-01   p_cons 2.904545e-03   p_joint 1.344545e-02

Joint ci ratio: 7.143919e-02	ci left: 1.245989e-02	ci right 1.338723e-02	k: 2971	n:230000
Cons ci ratio: 1.513351e-01	ci left: 2.688533e-03	ci right 3.132837e-03	k: 668	n:230000
KS ci ratio: 1.168654e-02	ci left: 3.265675e-01	ci right 3.304107e-01	k: 75552	n:230000
ZNF600   230000 perm   60 sec   (3841 perm/sec)   p_kst 3.284870e-01   p_cons 2.904348e-03   p_joint 1.291739e-02

Joint ci ratio: 7.043392e-02	ci left: 1.229267e-02	ci right 1.319416e-02	k: 3057	n:240000
Cons ci ratio: 1.484783e-01	ci left: 2.680780e-03	ci right 3.114697e-03	k: 694	n:240000
KS ci ratio: 1.144101e-02	ci left: 3.265877e-01	ci right 3.303498e-01	k: 78832	n:240000
ZNF600   240000 perm   63 sec   (3790 perm/sec)   p_kst 3.284667e-01   p_cons 2.891667e-03   p_joint 1.273750e-02

Joint ci ratio: 6.986465e-02	ci left: 1.200132e-02	ci right 1.287404e-02	k: 3108	n:250000
Cons ci ratio: 1.449731e-01	ci left: 2.704559e-03	ci right 3.131095e-03	k: 728	n:250000
KS ci ratio: 1.121135e-02	ci left: 3.265671e-01	ci right 3.302529e-01	k: 82102	n:250000
ZNF600   250000 perm   67 sec   (3738 perm/sec)   p_kst 3.284080e-01   p_cons 2.912000e-03   p_joint 1.243200e-02

Joint ci ratio: 6.897778e-02	ci left: 1.184583e-02	ci right 1.269587e-02	k: 3189	n:260000
Cons ci ratio: 1.422670e-01	ci left: 2.704360e-03	ci right 3.122228e-03	k: 756	n:260000
KS ci ratio: 1.099499e-02	ci left: 3.265487e-01	ci right 3.301628e-01	k: 85372	n:260000
ZNF600   260000 perm   70 sec   (3691 perm/sec)   p_kst 3.283538e-01   p_cons 2.907692e-03   p_joint 1.226538e-02

Joint ci ratio: 7.012578e-02	ci left: 1.103936e-02	ci right 1.184525e-02	k: 3088	n:270000
Cons ci ratio: 1.387355e-01	ci left: 2.743569e-03	ci right 3.156104e-03	k: 795	n:270000
KS ci ratio: 1.079368e-02	ci left: 3.264104e-01	ci right 3.299563e-01	k: 88609	n:270000
ZNF600   270000 perm   74 sec   (3643 perm/sec)   p_kst 3.281815e-01   p_cons 2.944444e-03   p_joint 1.143704e-02

Joint ci ratio: 7.424713e-02	ci left: 9.491005e-03	ci right 1.022634e-02	k: 2759	n:280000
Cons ci ratio: 1.369430e-01	ci left: 2.717996e-03	ci right 3.120974e-03	k: 816	n:280000
KS ci ratio: 1.059617e-02	ci left: 3.265678e-01	ci right 3.300501e-01	k: 91926	n:280000
ZNF600   280000 perm   78 sec   (3597 perm/sec)   p_kst 3.283071e-01   p_cons 2.914286e-03   p_joint 9.853571e-03

Joint ci ratio: 7.323537e-02	ci left: 9.424338e-03	ci right 1.014413e-02	k: 2836	n:290000
Cons ci ratio: 1.353802e-01	ci left: 2.687554e-03	ci right 3.081105e-03	k: 835	n:290000
KS ci ratio: 1.040895e-02	ci left: 3.267217e-01	ci right 3.301438e-01	k: 95245	n:290000
ZNF600   290000 perm   82 sec   (3552 perm/sec)   p_kst 3.284310e-01   p_cons 2.879310e-03   p_joint 9.779310e-03

Joint ci ratio: 6.625647e-02	ci left: 1.115104e-02	ci right 1.191844e-02	k: 3459	n:300000
Cons ci ratio: 1.338698e-01	ci left: 2.659167e-03	ci right 3.043870e-03	k: 854	n:300000
KS ci ratio: 1.022622e-02	ci left: 3.270857e-01	ci right 3.304510e-01	k: 98630	n:300000
ZNF600   300000 perm   85 sec   (3509 perm/sec)   p_kst 3.287667e-01   p_cons 2.846667e-03   p_joint 1.153000e-02

Joint ci ratio: 6.785338e-02	ci left: 1.029004e-02	ci right 1.101593e-02	k: 3301	n:310000
Cons ci ratio: 1.321059e-01	ci left: 2.645111e-03	ci right 3.022343e-03	k: 877	n:310000
KS ci ratio: 1.006064e-02	ci left: 3.270819e-01	ci right 3.303923e-01	k: 101908	n:310000
ZNF600   310000 perm   89 sec   (3465 perm/sec)   p_kst 3.287355e-01   p_cons 2.829032e-03   p_joint 1.064839e-02

Joint ci ratio: 6.663195e-02	ci left: 1.034333e-02	ci right 1.105933e-02	k: 3423	n:320000
Cons ci ratio: 1.296189e-01	ci left: 2.665225e-03	ci right 3.037619e-03	k: 911	n:320000
KS ci ratio: 9.908886e-03	ci left: 3.268103e-01	ci right 3.300678e-01	k: 105100	n:320000
ZNF600   320000 perm   93 sec   (3423 perm/sec)   p_kst 3.284375e-01   p_cons 2.846875e-03   p_joint 1.069687e-02

Joint ci ratio: 6.590768e-02	ci left: 1.025636e-02	ci right 1.095833e-02	k: 3499	n:330000
Cons ci ratio: 1.285685e-01	ci left: 2.628444e-03	ci right 2.992496e-03	k: 926	n:330000
KS ci ratio: 9.758227e-03	ci left: 3.268068e-01	ci right 3.300144e-01	k: 108375	n:330000
ZNF600   330000 perm   98 sec   (3380 perm/sec)   p_kst 3.284091e-01   p_cons 2.806061e-03   p_joint 1.060303e-02

Joint ci ratio: 6.867760e-02	ci left: 9.165090e-03	ci right 9.819781e-03	k: 3226	n:340000
Cons ci ratio: 1.270036e-01	ci left: 2.616620e-03	ci right 2.974291e-03	k: 949	n:340000
KS ci ratio: 9.615904e-03	ci left: 3.267274e-01	ci right 3.298873e-01	k: 111624	n:340000
ZNF600   340000 perm   102 sec   (3341 perm/sec)   p_kst 3.283059e-01   p_cons 2.791176e-03   p_joint 9.488235e-03

Joint ci ratio: 5.889318e-02	ci left: 1.213172e-02	ci right 1.287067e-02	k: 4374	n:350000
Cons ci ratio: 1.107205e-01	ci left: 3.370931e-03	ci right 3.768787e-03	k: 1248	n:350000
KS ci ratio: 9.478834e-03	ci left: 3.266900e-01	ci right 3.298042e-01	k: 114886	n:350000
ZNF600   350000 perm   106 sec   (3302 perm/sec)   p_kst 3.282457e-01   p_cons 3.565714e-03   p_joint 1.249714e-02

Joint ci ratio: 5.870688e-02	ci left: 1.187405e-02	ci right 1.259494e-02	k: 4403	n:360000
Cons ci ratio: 1.090308e-01	ci left: 3.382651e-03	ci right 3.775406e-03	k: 1287	n:360000
KS ci ratio: 9.341401e-03	ci left: 3.269408e-01	ci right 3.300120e-01	k: 118251	n:360000
ZNF600   360000 perm   110 sec   (3264 perm/sec)   p_kst 3.284750e-01   p_cons 3.575000e-03   p_joint 1.223056e-02

Joint ci ratio: 5.824998e-02	ci left: 1.173953e-02	ci right 1.244652e-02	k: 4473	n:370000
Cons ci ratio: 1.077426e-01	ci left: 3.372739e-03	ci right 3.759424e-03	k: 1318	n:370000
KS ci ratio: 9.215700e-03	ci left: 3.268949e-01	ci right 3.299240e-01	k: 121511	n:370000
ZNF600   370000 perm   115 sec   (3227 perm/sec)   p_kst 3.284081e-01   p_cons 3.562162e-03   p_joint 1.208919e-02

Joint ci ratio: 5.847799e-02	ci left: 1.134495e-02	ci right 1.203094e-02	k: 4440	n:380000
Cons ci ratio: 1.063017e-01	ci left: 3.376184e-03	ci right 3.757763e-03	k: 1354	n:380000
KS ci ratio: 9.094506e-03	ci left: 3.268726e-01	ci right 3.298616e-01	k: 124779	n:380000
ZNF600   380000 perm   119 sec   (3190 perm/sec)   p_kst 3.283658e-01   p_cons 3.563158e-03   p_joint 1.168421e-02

Joint ci ratio: 5.523185e-02	ci left: 1.239896e-02	ci right 1.310574e-02	k: 4972	n:390000
Cons ci ratio: 1.047660e-01	ci left: 3.389474e-03	ci right 3.766679e-03	k: 1394	n:390000
KS ci ratio: 8.978023e-03	ci left: 3.268492e-01	ci right 3.297995e-01	k: 128046	n:390000
ZNF600   390000 perm   124 sec   (3155 perm/sec)   p_kst 3.283231e-01   p_cons 3.574359e-03   p_joint 1.274872e-02

Joint ci ratio: 5.482916e-02	ci left: 1.227142e-02	ci right 1.296567e-02	k: 5046	n:400000
Cons ci ratio: 1.036581e-01	ci left: 3.377781e-03	ci right 3.749468e-03	k: 1424	n:400000
KS ci ratio: 8.864950e-03	ci left: 3.268747e-01	ci right 3.297878e-01	k: 131332	n:400000
ZNF600   400000 perm   128 sec   (3119 perm/sec)   p_kst 3.283300e-01   p_cons 3.560000e-03   p_joint 1.261500e-02

Joint ci ratio: 5.556110e-02	ci left: 1.166172e-02	ci right 1.233057e-02	k: 4917	n:410000
Cons ci ratio: 1.021976e-01	ci left: 3.392823e-03	ci right 3.760589e-03	k: 1465	n:410000
KS ci ratio: 8.757545e-03	ci left: 3.268236e-01	ci right 3.297008e-01	k: 134587	n:410000
ZNF600   410000 perm   133 sec   (3086 perm/sec)   p_kst 3.282610e-01   p_cons 3.573171e-03   p_joint 1.199268e-02

Joint ci ratio: 5.497277e-02	ci left: 1.163295e-02	ci right 1.229285e-02	k: 5023	n:420000
Cons ci ratio: 1.008980e-01	ci left: 3.400220e-03	ci right 3.763824e-03	k: 1503	n:420000
KS ci ratio: 8.652410e-03	ci left: 3.268536e-01	ci right 3.296963e-01	k: 137875	n:420000
ZNF600   420000 perm   138 sec   (3053 perm/sec)   p_kst 3.282738e-01   p_cons 3.578571e-03   p_joint 1.195952e-02

Joint ci ratio: 5.405718e-02	ci left: 1.175469e-02	ci right 1.241005e-02	k: 5194	n:430000
Cons ci ratio: 9.958199e-02	ci left: 3.411838e-03	ci right 3.771647e-03	k: 1543	n:430000
KS ci ratio: 8.547322e-03	ci left: 3.270706e-01	ci right 3.298805e-01	k: 141244	n:430000
ZNF600   430000 perm   142 sec   (3022 perm/sec)   p_kst 3.284744e-01   p_cons 3.588372e-03   p_joint 1.207907e-02

Outputting figure to mutsig2_images.part000000000198/ZNF600.5_2173_430000_0.32847_0.0035884_0.012079.png
                gene_name: ZNF600
               theta_stop: 0.100 
                    nperm: 430000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.0036 
      ci_cons_bounds_left: 0.0034 
     ci_cons_bounds_right: 0.0038 
                  p_joint: 0.012 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.012 

Current progress: 26 percent done.
ZNF614
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.997367e-03	ci left: 9.341299e-01	ci right 9.436124e-01	k: 9390	n:10000
KS ci ratio: 2.028428e-02	ci left: 7.806667e-01	ci right 7.967648e-01	k: 7888	n:10000
ZNF614   10000 perm   2 sec   (6526 perm/sec)   p_kst 7.888000e-01   p_cons 9.390000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000198/ZNF614.5_1774_10000_0.7888_0.939_1.png
                gene_name: ZNF614
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 28 percent done.
ZNF554
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.809983e-01	ci left: 4.073298e-02	ci right 4.893483e-02	k: 447	n:10000
Cons ci ratio: 7.591471e-02	ci left: 2.024465e-01	ci right 2.185225e-01	k: 2104	n:10000
KS ci ratio: 1.677072e-01	ci left: 4.744132e-02	ci right 5.622208e-02	k: 517	n:10000
ZNF554   10000 perm   1 sec   (6815 perm/sec)   p_kst 5.170000e-02   p_cons 2.104000e-01   p_joint 4.470000e-02

Joint ci ratio: 9.962254e-02	ci left: 6.825964e-02	ci right 7.546543e-02	k: 1436	n:20000
Cons ci ratio: 5.194969e-02	ci left: 2.158103e-01	ci right 2.273708e-01	k: 4431	n:20000
KS ci ratio: 1.190142e-01	ci left: 4.838015e-02	ci right 5.455108e-02	k: 1028	n:20000
ZNF554   20000 perm   3 sec   (6173 perm/sec)   p_kst 5.140000e-02   p_cons 2.215500e-01   p_joint 7.180000e-02

Joint ci ratio: 1.004605e-01	ci left: 4.586852e-02	ci right 5.075276e-02	k: 1448	n:30000
Cons ci ratio: 4.290221e-02	ci left: 2.130079e-01	ci right 2.223802e-01	k: 6530	n:30000
KS ci ratio: 9.722523e-02	ci left: 4.889563e-02	ci right 5.392503e-02	k: 1541	n:30000
ZNF554   30000 perm   5 sec   (5940 perm/sec)   p_kst 5.136667e-02   p_cons 2.176667e-01   p_joint 4.826667e-02

Joint ci ratio: 9.620696e-02	ci left: 3.792964e-02	ci right 4.178753e-02	k: 1593	n:40000
Cons ci ratio: 3.703761e-02	ci left: 2.147068e-01	ci right 2.228341e-01	k: 8750	n:40000
KS ci ratio: 8.358026e-02	ci left: 4.994228e-02	ci right 5.432303e-02	k: 2084	n:40000
ZNF554   40000 perm   7 sec   (5775 perm/sec)   p_kst 5.210000e-02   p_cons 2.187500e-01   p_joint 3.982500e-02

Outputting figure to mutsig2_images.part000000000198/ZNF554.4_1637_40000_0.0521_0.21875_0.039825.png
                gene_name: ZNF554
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.052 
        ci_ks_bounds_left: 0.050 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.040 
     ci_joint_bounds_left: 0.038 
    ci_joint_bounds_right: 0.042 

Current progress: 30 percent done.
ZNF559
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.250506e-02	ci left: 7.435143e-01	ci right 7.605386e-01	k: 7521	n:10000
Cons ci ratio: 4.872833e-02	ci left: 3.832104e-01	ci right 4.024520e-01	k: 3928	n:10000
KS ci ratio: 3.027066e-02	ci left: 6.168328e-01	ci right 6.358936e-01	k: 6264	n:10000
ZNF559   10000 perm   1 sec   (7127 perm/sec)   p_kst 6.264000e-01   p_cons 3.928000e-01   p_joint 7.521000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF559.4_1633_10000_0.6264_0.3928_0.7521.png
                gene_name: ZNF559
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 31 percent done.
ZNF562
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.481661e-02	ci left: 1.684829e-01	ci right 1.835063e-01	k: 1759	n:10000
Cons ci ratio: 8.403543e-02	ci left: 1.711374e-01	ci right 1.862502e-01	k: 1786	n:10000
KS ci ratio: 6.195184e-02	ci left: 2.769584e-01	ci right 2.947665e-01	k: 2858	n:10000
ZNF562   10000 perm   1 sec   (6754 perm/sec)   p_kst 2.858000e-01   p_cons 1.786000e-01   p_joint 1.759000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF562.4_1301_10000_0.2858_0.1786_0.1759.png
                gene_name: ZNF562
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 33 percent done.
ZNF570
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.158783e-02	ci left: 9.142005e-01	ci right 9.249535e-01	k: 9197	n:10000
KS ci ratio: 1.615181e-02	ci left: 8.478437e-01	ci right 8.617489e-01	k: 8549	n:10000
ZNF570   10000 perm   2 sec   (6645 perm/sec)   p_kst 8.549000e-01   p_cons 9.197000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000198/ZNF570.4_1627_10000_0.8549_0.9197_1.png
                gene_name: ZNF570
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 34 percent done.
ZNF585B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.084347e-02	ci left: 2.260267e-01	ci right 2.427283e-01	k: 2343	n:10000
Cons ci ratio: 1.186529e-01	ci left: 9.253239e-02	ci right 1.043027e-01	k: 983	n:10000
KS ci ratio: 6.118695e-02	ci left: 2.820102e-01	ci right 2.999117e-01	k: 2909	n:10000
ZNF585B   10000 perm   2 sec   (6006 perm/sec)   p_kst 2.909000e-01   p_cons 9.830000e-02   p_joint 2.343000e-01

Joint ci ratio: 5.788060e-02	ci left: 1.811226e-01	ci right 1.919687e-01	k: 3730	n:20000
Cons ci ratio: 8.380750e-02	ci left: 9.445279e-02	ci right 1.027643e-01	k: 1971	n:20000
KS ci ratio: 4.247717e-02	ci left: 2.922621e-01	ci right 3.049965e-01	k: 5972	n:20000
ZNF585B   20000 perm   4 sec   (5509 perm/sec)   p_kst 2.986000e-01   p_cons 9.855000e-02   p_joint 1.865000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF585B.4_2326_20000_0.2986_0.09855_0.1865.png
                gene_name: ZNF585B
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.099 
      ci_cons_bounds_left: 0.094 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 36 percent done.
ZNF599
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.911164e-02	ci left: 2.349160e-01	ci right 2.518337e-01	k: 2433	n:10000
Cons ci ratio: 9.038799e-02	ci left: 1.510978e-01	ci right 1.655018e-01	k: 1582	n:10000
KS ci ratio: 3.959588e-02	ci left: 4.850534e-01	ci right 5.047496e-01	k: 4949	n:10000
ZNF599   10000 perm   2 sec   (5968 perm/sec)   p_kst 4.949000e-01   p_cons 1.582000e-01   p_joint 2.433000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF599.4_1783_10000_0.4949_0.1582_0.2433.png
                gene_name: ZNF599
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 38 percent done.
ZNF609
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.546793e-02	ci left: 2.551824e-01	ci right 2.725554e-01	k: 2638	n:10000
Cons ci ratio: 1.211965e-01	ci left: 8.893260e-02	ci right 1.005047e-01	k: 946	n:10000
KS ci ratio: 3.640140e-02	ci left: 5.270673e-01	ci right 5.467112e-01	k: 5369	n:10000
ZNF609   10000 perm   2 sec   (5371 perm/sec)   p_kst 5.369000e-01   p_cons 9.460000e-02   p_joint 2.638000e-01

Joint ci ratio: 5.368043e-02	ci left: 2.048181e-01	ci right 2.161662e-01	k: 4209	n:20000
Cons ci ratio: 8.763043e-02	ci left: 8.695066e-02	ci right 9.496872e-02	k: 1818	n:20000
KS ci ratio: 2.647765e-02	ci left: 5.158998e-01	ci right 5.297935e-01	k: 10457	n:20000
ZNF609   20000 perm   4 sec   (4919 perm/sec)   p_kst 5.228500e-01   p_cons 9.090000e-02   p_joint 2.104500e-01

Outputting figure to mutsig2_images.part000000000198/ZNF609.4_4268_20000_0.52285_0.0909_0.21045.png
                gene_name: ZNF609
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.091 
      ci_cons_bounds_left: 0.087 
     ci_cons_bounds_right: 0.095 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 39 percent done.
ZNF618
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.605823e-02	ci left: 3.190972e-01	ci right 3.376029e-01	k: 3283	n:10000
Cons ci ratio: 4.852468e-02	ci left: 3.852013e-01	ci right 4.044600e-01	k: 3948	n:10000
KS ci ratio: 5.938332e-02	ci left: 2.943978e-01	ci right 3.125168e-01	k: 3034	n:10000
ZNF618   10000 perm   2 sec   (6106 perm/sec)   p_kst 3.034000e-01   p_cons 3.948000e-01   p_joint 3.283000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF618.4_2642_10000_0.3034_0.3948_0.3283.png
                gene_name: ZNF618
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 41 percent done.
ZNF622
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.198219e-02	ci left: 2.767603e-01	ci right 2.945647e-01	k: 2856	n:10000
Cons ci ratio: 9.663204e-02	ci left: 1.344301e-01	ci right 1.481796e-01	k: 1412	n:10000
KS ci ratio: 4.172899e-02	ci left: 4.588797e-01	ci right 4.785385e-01	k: 4687	n:10000
ZNF622   10000 perm   2 sec   (6644 perm/sec)   p_kst 4.687000e-01   p_cons 1.412000e-01   p_joint 2.856000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF622.4_1458_10000_0.4687_0.1412_0.2856.png
                gene_name: ZNF622
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 43 percent done.
ZNF623
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.404922e-02	ci left: 2.636916e-01	ci right 2.812411e-01	k: 2724	n:10000
Cons ci ratio: 6.320387e-02	ci left: 2.689378e-01	ci right 2.865919e-01	k: 2777	n:10000
KS ci ratio: 9.176931e-02	ci left: 1.471732e-01	ci right 1.614288e-01	k: 1542	n:10000
ZNF623   10000 perm   2 sec   (6636 perm/sec)   p_kst 1.542000e-01   p_cons 2.777000e-01   p_joint 2.724000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF623.4_1615_10000_0.1542_0.2777_0.2724.png
                gene_name: ZNF623
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 44 percent done.
ZNF648
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.578270e-01	ci left: 5.349797e-02	ci right 6.276153e-02	k: 580	n:10000
Cons ci ratio: 2.558164e-02	ci left: 6.922218e-01	ci right 7.102608e-01	k: 7013	n:10000
KS ci ratio: 3.093700e-01	ci left: 1.335536e-02	ci right 1.833248e-02	k: 157	n:10000
ZNF648   10000 perm   2 sec   (6584 perm/sec)   p_kst 1.570000e-02   p_cons 7.013000e-01   p_joint 5.800000e-02

Joint ci ratio: 1.290471e-01	ci left: 4.124750e-02	ci right 4.698598e-02	k: 881	n:20000
Cons ci ratio: 1.802039e-02	ci left: 6.965125e-01	ci right 7.092285e-01	k: 14058	n:20000
KS ci ratio: 2.253759e-01	ci left: 1.321953e-02	ci right 1.662363e-02	k: 297	n:20000
ZNF648   20000 perm   3 sec   (5894 perm/sec)   p_kst 1.485000e-02   p_cons 7.029000e-01   p_joint 4.405000e-02

Joint ci ratio: 9.913765e-02	ci left: 4.707254e-02	ci right 5.201516e-02	k: 1485	n:30000
Cons ci ratio: 1.464799e-02	ci left: 6.995686e-01	ci right 7.099250e-01	k: 21143	n:30000
KS ci ratio: 1.874555e-01	ci left: 1.301884e-02	ci right 1.574306e-02	k: 430	n:30000
ZNF648   30000 perm   5 sec   (5629 perm/sec)   p_kst 1.433333e-02   p_cons 7.047667e-01   p_joint 4.950000e-02

Joint ci ratio: 8.307704e-02	ci left: 5.053042e-02	ci right 5.493480e-02	k: 2108	n:40000
Cons ci ratio: 1.271582e-02	ci left: 6.992733e-01	ci right 7.082471e-01	k: 28151	n:40000
KS ci ratio: 1.635980e-01	ci left: 1.299143e-02	ci right 1.532988e-02	k: 565	n:40000
ZNF648   40000 perm   7 sec   (5453 perm/sec)   p_kst 1.412500e-02   p_cons 7.037750e-01   p_joint 5.270000e-02

Joint ci ratio: 8.986501e-02	ci left: 3.501017e-02	ci right 3.832390e-02	k: 1832	n:50000
Cons ci ratio: 1.137763e-02	ci left: 6.995955e-01	ci right 7.076208e-01	k: 35181	n:50000
KS ci ratio: 1.475480e-01	ci left: 1.289210e-02	ci right 1.496490e-02	k: 695	n:50000
ZNF648   50000 perm   9 sec   (5309 perm/sec)   p_kst 1.390000e-02   p_cons 7.036200e-01   p_joint 3.664000e-02

Joint ci ratio: 8.644857e-02	ci left: 3.169915e-02	ci right 3.457957e-02	k: 1987	n:60000
Cons ci ratio: 1.034949e-02	ci left: 7.014331e-01	ci right 7.087470e-01	k: 42306	n:60000
KS ci ratio: 1.369723e-01	ci left: 1.254355e-02	ci right 1.440395e-02	k: 807	n:60000
ZNF648   60000 perm   12 sec   (5194 perm/sec)   p_kst 1.345000e-02   p_cons 7.051000e-01   p_joint 3.311667e-02

Joint ci ratio: 8.190503e-02	ci left: 3.038642e-02	ci right 3.299545e-02	k: 2217	n:70000
Cons ci ratio: 9.583419e-03	ci left: 7.016347e-01	ci right 7.084054e-01	k: 49352	n:70000
KS ci ratio: 1.267891e-01	ci left: 1.261665e-02	ci right 1.433831e-02	k: 942	n:70000
ZNF648   70000 perm   14 sec   (5088 perm/sec)   p_kst 1.345714e-02   p_cons 7.050286e-01   p_joint 3.167143e-02

Joint ci ratio: 7.656620e-02	ci left: 3.050897e-02	ci right 3.295014e-02	k: 2537	n:80000
Cons ci ratio: 8.976408e-03	ci left: 7.012996e-01	ci right 7.076356e-01	k: 56358	n:80000
KS ci ratio: 1.179759e-01	ci left: 1.280883e-02	ci right 1.442673e-02	k: 1088	n:80000
ZNF648   80000 perm   16 sec   (4990 perm/sec)   p_kst 1.360000e-02   p_cons 7.044750e-01   p_joint 3.171250e-02

Joint ci ratio: 7.778440e-02	ci left: 2.637588e-02	ci right 2.852139e-02	k: 2469	n:90000
Cons ci ratio: 8.482188e-03	ci left: 7.005375e-01	ci right 7.065160e-01	k: 63318	n:90000
KS ci ratio: 1.112806e-01	ci left: 1.284265e-02	ci right 1.436672e-02	k: 1223	n:90000
ZNF648   90000 perm   18 sec   (4895 perm/sec)   p_kst 1.358889e-02   p_cons 7.035333e-01   p_joint 2.743333e-02

Joint ci ratio: 7.856527e-02	ci left: 2.333485e-02	ci right 2.525288e-02	k: 2428	n:100000
Cons ci ratio: 8.054695e-03	ci left: 7.002874e-01	ci right 7.059608e-01	k: 70313	n:100000
KS ci ratio: 1.054915e-01	ci left: 1.290101e-02	ci right 1.434741e-02	k: 1361	n:100000
ZNF648   100000 perm   21 sec   (4805 perm/sec)   p_kst 1.361000e-02   p_cons 7.031300e-01   p_joint 2.428000e-02

Joint ci ratio: 6.916513e-02	ci left: 2.739051e-02	ci right 2.936174e-02	k: 3120	n:110000
Cons ci ratio: 7.685424e-03	ci left: 7.001167e-01	ci right 7.055272e-01	k: 77311	n:110000
KS ci ratio: 1.008968e-01	ci left: 1.285292e-02	ci right 1.422745e-02	k: 1488	n:110000
ZNF648   110000 perm   23 sec   (4706 perm/sec)   p_kst 1.352727e-02   p_cons 7.028273e-01   p_joint 2.836364e-02

Joint ci ratio: 6.945516e-02	ci left: 2.495946e-02	ci right 2.676355e-02	k: 3102	n:120000
Cons ci ratio: 7.355340e-03	ci left: 7.003973e-01	ci right 7.055762e-01	k: 84359	n:120000
KS ci ratio: 9.679374e-02	ci left: 1.283027e-02	ci right 1.414340e-02	k: 1617	n:120000
ZNF648   120000 perm   26 sec   (4627 perm/sec)   p_kst 1.347500e-02   p_cons 7.029917e-01   p_joint 2.585000e-02

Outputting figure to mutsig2_images.part000000000198/ZNF648.4_1711_120000_0.013475_0.70299_0.02585.png
                gene_name: ZNF648
               theta_stop: 0.097 
                    nperm: 120000 
                     p_ks: 0.013 
        ci_ks_bounds_left: 0.013 
       ci_ks_bounds_right: 0.014 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.026 
     ci_joint_bounds_left: 0.025 
    ci_joint_bounds_right: 0.027 

Current progress: 46 percent done.
ZNF654
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.889535e-02	ci left: 2.978678e-01	ci right 3.160448e-01	k: 3069	n:10000
Cons ci ratio: 6.748140e-02	ci left: 2.437115e-01	ci right 2.608330e-01	k: 2522	n:10000
KS ci ratio: 8.213870e-02	ci left: 1.778256e-01	ci right 1.931581e-01	k: 1854	n:10000
ZNF654   10000 perm   2 sec   (6597 perm/sec)   p_kst 1.854000e-01   p_cons 2.522000e-01   p_joint 3.069000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF654.4_1754_10000_0.1854_0.2522_0.3069.png
                gene_name: ZNF654
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 48 percent done.
ZNF556
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.434813e-02	ci left: 8.754132e-01	ci right 8.881634e-01	k: 8819	n:10000
KS ci ratio: 1.855357e-02	ci left: 8.092795e-01	ci right 8.245354e-01	k: 8170	n:10000
ZNF556   10000 perm   1 sec   (7045 perm/sec)   p_kst 8.170000e-01   p_cons 8.819000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000198/ZNF556.3_1387_10000_0.817_0.8819_1.png
                gene_name: ZNF556
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 49 percent done.
ZNF557
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.180449e-02	ci left: 1.470751e-01	ci right 1.613269e-01	k: 1541	n:10000
Cons ci ratio: 5.692071e-02	ci left: 3.124482e-01	ci right 3.308558e-01	k: 3216	n:10000
KS ci ratio: 9.667188e-02	ci left: 1.343321e-01	ci right 1.480776e-01	k: 1411	n:10000
ZNF557   10000 perm   1 sec   (7041 perm/sec)   p_kst 1.411000e-01   p_cons 3.216000e-01   p_joint 1.541000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF557.3_1317_10000_0.1411_0.3216_0.1541.png
                gene_name: ZNF557
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 51 percent done.
ZNF566
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.395245e-02	ci left: 2.642855e-01	ci right 2.818469e-01	k: 2730	n:10000
Cons ci ratio: 5.492152e-02	ci left: 3.281313e-01	ci right 3.467635e-01	k: 3374	n:10000
KS ci ratio: 7.548344e-02	ci left: 2.043197e-01	ci right 2.204482e-01	k: 2123	n:10000
ZNF566   10000 perm   1 sec   (7080 perm/sec)   p_kst 2.123000e-01   p_cons 3.374000e-01   p_joint 2.730000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF566.3_1276_10000_0.2123_0.3374_0.273.png
                gene_name: ZNF566
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 52 percent done.
ZNF567
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 1.130871e+00	ci left: 5.492399e-04	ci right 1.967349e-03	k: 11	n:10000
KS ci ratio: 7.677370e-01	ci left: 1.618501e-03	ci right 3.688296e-03	k: 25	n:10000
ZNF567   10000 perm   1 sec   (6746 perm/sec)   p_kst 2.500000e-03   p_cons 1.100000e-03   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 8.168860e-01	ci left: 6.894885e-04	ci right 1.664942e-03	k: 22	n:20000
KS ci ratio: 5.772931e-01	ci left: 1.641624e-03	ci right 3.009532e-03	k: 45	n:20000
ZNF567   20000 perm   3 sec   (5827 perm/sec)   p_kst 2.250000e-03   p_cons 1.100000e-03   p_joint 0

Joint ci ratio: 3.919869e+00	ci left: 0	ci right 1.229551e-04	k: 0	n:30000
Cons ci ratio: 6.529304e-01	ci left: 8.127564e-04	ci right 1.622181e-03	k: 35	n:30000
KS ci ratio: 4.783612e-01	ci left: 1.701876e-03	ci right 2.798101e-03	k: 66	n:30000
ZNF567   30000 perm   5 sec   (5619 perm/sec)   p_kst 2.200000e-03   p_cons 1.166667e-03   p_joint 0

Joint ci ratio: 3.919902e+00	ci left: 0	ci right 9.221773e-05	k: 0	n:40000
Cons ci ratio: 5.485529e-01	ci left: 9.279120e-04	ci right 1.647641e-03	k: 50	n:40000
KS ci ratio: 4.017006e-01	ci left: 1.899444e-03	ci right 2.875048e-03	k: 94	n:40000
ZNF567   40000 perm   7 sec   (5465 perm/sec)   p_kst 2.350000e-03   p_cons 1.250000e-03   p_joint 0

Joint ci ratio: 3.919922e+00	ci left: 0	ci right 7.377487e-05	k: 0	n:50000
Cons ci ratio: 5.235334e-01	ci left: 8.287747e-04	ci right 1.431564e-03	k: 55	n:50000
KS ci ratio: 3.767908e-01	ci left: 1.754103e-03	ci right 2.585394e-03	k: 107	n:50000
ZNF567   50000 perm   9 sec   (5337 perm/sec)   p_kst 2.140000e-03   p_cons 1.100000e-03   p_joint 0

Joint ci ratio: 3.919935e+00	ci left: 0	ci right 6.147943e-05	k: 0	n:60000
Cons ci ratio: 4.786328e-01	ci left: 8.508389e-04	ci right 1.399260e-03	k: 66	n:60000
KS ci ratio: 3.421151e-01	ci left: 1.810552e-03	ci right 2.572218e-03	k: 130	n:60000
ZNF567   60000 perm   11 sec   (5233 perm/sec)   p_kst 2.166667e-03   p_cons 1.100000e-03   p_joint 0

Joint ci ratio: 3.919944e+00	ci left: 0	ci right 5.269689e-05	k: 0	n:70000
Cons ci ratio: 4.523968e-01	ci left: 8.301729e-04	ci right 1.326967e-03	k: 74	n:70000
KS ci ratio: 3.251986e-01	ci left: 1.735145e-03	ci right 2.421465e-03	k: 144	n:70000
ZNF567   70000 perm   14 sec   (5137 perm/sec)   p_kst 2.057143e-03   p_cons 1.057143e-03   p_joint 0

Joint ci ratio: 3.919951e+00	ci left: 0	ci right 4.610993e-05	k: 0	n:80000
Cons ci ratio: 4.019421e-01	ci left: 9.496208e-04	ci right 1.437713e-03	k: 94	n:80000
KS ci ratio: 3.125410e-01	ci left: 1.656240e-03	ci right 2.280763e-03	k: 156	n:80000
ZNF567   80000 perm   16 sec   (5043 perm/sec)   p_kst 1.950000e-03   p_cons 1.175000e-03   p_joint 0

Joint ci ratio: 3.919956e+00	ci left: 0	ci right 4.098671e-05	k: 0	n:90000
Cons ci ratio: 3.752384e-01	ci left: 9.844840e-04	ci right 1.448628e-03	k: 108	n:90000
KS ci ratio: 3.039686e-01	ci left: 1.564468e-03	ci right 2.135075e-03	k: 165	n:90000
ZNF567   90000 perm   18 sec   (4952 perm/sec)   p_kst 1.833333e-03   p_cons 1.200000e-03   p_joint 0

Joint ci ratio: 3.919961e+00	ci left: 0	ci right 3.688811e-05	k: 0	n:100000
Cons ci ratio: 3.576288e-01	ci left: 9.859121e-04	ci right 1.423846e-03	k: 119	n:100000
KS ci ratio: 2.871595e-01	ci left: 1.593207e-03	ci right 2.136339e-03	k: 185	n:100000
ZNF567   100000 perm   21 sec   (4868 perm/sec)   p_kst 1.850000e-03   p_cons 1.190000e-03   p_joint 0

Joint ci ratio: 3.919964e+00	ci left: 0	ci right 3.353471e-05	k: 0	n:110000
Cons ci ratio: 3.576485e-01	ci left: 8.962758e-04	ci right 1.294419e-03	k: 119	n:110000
KS ci ratio: 2.790370e-01	ci left: 1.541266e-03	ci right 2.049216e-03	k: 196	n:110000
ZNF567   110000 perm   23 sec   (4783 perm/sec)   p_kst 1.781818e-03   p_cons 1.081818e-03   p_joint 0

Joint ci ratio: 3.919967e+00	ci left: 0	ci right 3.074019e-05	k: 0	n:120000
Cons ci ratio: 3.397173e-01	ci left: 9.204398e-04	ci right 1.304326e-03	k: 132	n:120000
KS ci ratio: 2.872043e-01	ci left: 1.327645e-03	ci right 1.780325e-03	k: 185	n:120000
ZNF567   120000 perm   26 sec   (4703 perm/sec)   p_kst 1.541667e-03   p_cons 1.100000e-03   p_joint 0

Joint ci ratio: 3.919970e+00	ci left: 0	ci right 2.837559e-05	k: 0	n:130000
Cons ci ratio: 3.287781e-01	ci left: 9.130583e-04	ci right 1.279013e-03	k: 141	n:130000
KS ci ratio: 2.805053e-01	ci left: 1.289818e-03	ci right 1.717529e-03	k: 194	n:130000
ZNF567   130000 perm   28 sec   (4628 perm/sec)   p_kst 1.492308e-03   p_cons 1.084615e-03   p_joint 0

Joint ci ratio: 3.919972e+00	ci left: 0	ci right 2.634879e-05	k: 0	n:140000
Cons ci ratio: 3.198940e-01	ci left: 9.003303e-04	ci right 1.249436e-03	k: 149	n:140000
KS ci ratio: 2.722564e-01	ci left: 1.277462e-03	ci right 1.686489e-03	k: 206	n:140000
ZNF567   140000 perm   31 sec   (4556 perm/sec)   p_kst 1.471429e-03   p_cons 1.064286e-03   p_joint 0

Joint ci ratio: 3.919974e+00	ci left: 0	ci right 2.459223e-05	k: 0	n:150000
Cons ci ratio: 3.059322e-01	ci left: 9.263182e-04	ci right 1.266773e-03	k: 163	n:150000
KS ci ratio: 2.653020e-01	ci left: 1.260689e-03	ci right 1.652321e-03	k: 217	n:150000
ZNF567   150000 perm   33 sec   (4486 perm/sec)   p_kst 1.446667e-03   p_cons 1.086667e-03   p_joint 0

Joint ci ratio: 3.919976e+00	ci left: 0	ci right 2.305523e-05	k: 0	n:160000
Cons ci ratio: 2.912055e-01	ci left: 9.667229e-04	ci right 1.301776e-03	k: 180	n:160000
KS ci ratio: 2.560702e-01	ci left: 1.275365e-03	ci right 1.655568e-03	k: 233	n:160000
ZNF567   160000 perm   36 sec   (4415 perm/sec)   p_kst 1.456250e-03   p_cons 1.125000e-03   p_joint 0

Joint ci ratio: 3.919977e+00	ci left: 0	ci right 2.169906e-05	k: 0	n:170000
Cons ci ratio: 2.834810e-01	ci left: 9.644418e-04	ci right 1.288252e-03	k: 190	n:170000
KS ci ratio: 2.497484e-01	ci left: 1.266457e-03	ci right 1.633236e-03	k: 245	n:170000
ZNF567   170000 perm   39 sec   (4350 perm/sec)   p_kst 1.441176e-03   p_cons 1.117647e-03   p_joint 0

Joint ci ratio: 3.919978e+00	ci left: 0	ci right 2.049356e-05	k: 0	n:180000
Cons ci ratio: 2.763403e-01	ci left: 9.625182e-04	ci right 1.276128e-03	k: 200	n:180000
KS ci ratio: 2.424653e-01	ci left: 1.274294e-03	ci right 1.630961e-03	k: 260	n:180000
ZNF567   180000 perm   42 sec   (4286 perm/sec)   p_kst 1.444444e-03   p_cons 1.111111e-03   p_joint 0

Joint ci ratio: 3.919979e+00	ci left: 0	ci right 1.941497e-05	k: 0	n:190000
Cons ci ratio: 2.690758e-01	ci left: 9.657965e-04	ci right 1.270806e-03	k: 211	n:190000
KS ci ratio: 2.349333e-01	ci left: 1.291351e-03	ci right 1.639933e-03	k: 277	n:190000
ZNF567   190000 perm   45 sec   (4224 perm/sec)   p_kst 1.457895e-03   p_cons 1.110526e-03   p_joint 0

Joint ci ratio: 3.919980e+00	ci left: 0	ci right 1.844423e-05	k: 0	n:200000
Cons ci ratio: 2.617687e-01	ci left: 9.735157e-04	ci right 1.271248e-03	k: 223	n:200000
KS ci ratio: 2.284504e-01	ci left: 1.302142e-03	ci right 1.642570e-03	k: 293	n:200000
ZNF567   200000 perm   48 sec   (4164 perm/sec)   p_kst 1.465000e-03   p_cons 1.115000e-03   p_joint 0

Joint ci ratio: 3.919981e+00	ci left: 0	ci right 1.756594e-05	k: 0	n:210000
Cons ci ratio: 2.539512e-01	ci left: 9.895177e-04	ci right 1.281676e-03	k: 237	n:210000
KS ci ratio: 2.239276e-01	ci left: 1.294040e-03	ci right 1.624729e-03	k: 305	n:210000
ZNF567   210000 perm   51 sec   (4107 perm/sec)   p_kst 1.452381e-03   p_cons 1.128571e-03   p_joint 0

Joint ci ratio: 3.919982e+00	ci left: 0	ci right 1.676749e-05	k: 0	n:220000
Cons ci ratio: 2.458201e-01	ci left: 1.012715e-03	ci right 1.300687e-03	k: 253	n:220000
KS ci ratio: 2.207083e-01	ci left: 1.273849e-03	ci right 1.594063e-03	k: 314	n:220000
ZNF567   220000 perm   54 sec   (4051 perm/sec)   p_kst 1.427273e-03   p_cons 1.150000e-03   p_joint 0

Joint ci ratio: 3.919983e+00	ci left: 0	ci right 1.603848e-05	k: 0	n:230000
Cons ci ratio: 2.425037e-01	ci left: 9.972559e-04	ci right 1.276430e-03	k: 260	n:230000
KS ci ratio: 2.146586e-01	ci left: 1.292461e-03	ci right 1.607275e-03	k: 332	n:230000
ZNF567   230000 perm   58 sec   (3996 perm/sec)   p_kst 1.443478e-03   p_cons 1.130435e-03   p_joint 0

Joint ci ratio: 3.919984e+00	ci left: 0	ci right 1.537021e-05	k: 0	n:240000
Cons ci ratio: 2.388721e-01	ci left: 9.870261e-04	ci right 1.258587e-03	k: 268	n:240000
KS ci ratio: 2.112003e-01	ci left: 1.281997e-03	ci right 1.588580e-03	k: 343	n:240000
ZNF567   240000 perm   61 sec   (3942 perm/sec)   p_kst 1.429167e-03   p_cons 1.116667e-03   p_joint 0

Joint ci ratio: 3.919984e+00	ci left: 0	ci right 1.475541e-05	k: 0	n:250000
Cons ci ratio: 2.341331e-01	ci left: 9.889383e-04	ci right 1.254845e-03	k: 279	n:250000
KS ci ratio: 2.081977e-01	ci left: 1.268615e-03	ci right 1.567136e-03	k: 353	n:250000
ZNF567   250000 perm   64 sec   (3888 perm/sec)   p_kst 1.412000e-03   p_cons 1.116000e-03   p_joint 0

Joint ci ratio: 3.919985e+00	ci left: 0	ci right 1.418790e-05	k: 0	n:260000
Cons ci ratio: 2.288793e-01	ci left: 9.980032e-04	ci right 1.259476e-03	k: 292	n:260000
KS ci ratio: 2.039218e-01	ci left: 1.274539e-03	ci right 1.567526e-03	k: 368	n:260000
ZNF567   260000 perm   68 sec   (3835 perm/sec)   p_kst 1.415385e-03   p_cons 1.123077e-03   p_joint 0

Joint ci ratio: 3.919985e+00	ci left: 0	ci right 1.366242e-05	k: 0	n:270000
Cons ci ratio: 2.250713e-01	ci left: 9.959714e-04	ci right 1.251968e-03	k: 302	n:270000
KS ci ratio: 2.001602e-01	ci left: 1.276562e-03	ci right 1.563940e-03	k: 382	n:270000
ZNF567   270000 perm   71 sec   (3786 perm/sec)   p_kst 1.414815e-03   p_cons 1.118519e-03   p_joint 0

Joint ci ratio: 3.919986e+00	ci left: 0	ci right 1.317448e-05	k: 0	n:280000
Cons ci ratio: 2.200441e-01	ci left: 1.007615e-03	ci right 1.260037e-03	k: 316	n:280000
KS ci ratio: 1.965993e-01	ci left: 1.278488e-03	ci right 1.560566e-03	k: 396	n:280000
ZNF567   280000 perm   75 sec   (3737 perm/sec)   p_kst 1.414286e-03   p_cons 1.128571e-03   p_joint 0

Joint ci ratio: 3.919986e+00	ci left: 0	ci right 1.272019e-05	k: 0	n:290000
Cons ci ratio: 2.183314e-01	ci left: 9.891631e-04	ci right 1.234775e-03	k: 321	n:290000
KS ci ratio: 1.922872e-01	ci left: 1.293450e-03	ci right 1.571838e-03	k: 414	n:290000
ZNF567   290000 perm   79 sec   (3689 perm/sec)   p_kst 1.427586e-03   p_cons 1.106897e-03   p_joint 0

Joint ci ratio: 3.919987e+00	ci left: 0	ci right 1.229619e-05	k: 0	n:300000
Cons ci ratio: 2.118481e-01	ci left: 1.019269e-03	ci right 1.263865e-03	k: 341	n:300000
KS ci ratio: 1.875972e-01	ci left: 1.317009e-03	ci right 1.592766e-03	k: 435	n:300000
ZNF567   300000 perm   82 sec   (3643 perm/sec)   p_kst 1.450000e-03   p_cons 1.136667e-03   p_joint 0

Joint ci ratio: 3.919987e+00	ci left: 0	ci right 1.189954e-05	k: 0	n:310000
Cons ci ratio: 2.079325e-01	ci left: 1.026121e-03	ci right 1.267231e-03	k: 354	n:310000
KS ci ratio: 1.848619e-01	ci left: 1.314505e-03	ci right 1.585275e-03	k: 448	n:310000
ZNF567   310000 perm   86 sec   (3599 perm/sec)   p_kst 1.445161e-03   p_cons 1.141935e-03   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.152768e-05	k: 0	n:320000
Cons ci ratio: 2.056296e-01	ci left: 1.017760e-03	ci right 1.253924e-03	k: 362	n:320000
KS ci ratio: 1.822429e-01	ci left: 1.312185e-03	ci right 1.578225e-03	k: 461	n:320000
ZNF567   320000 perm   90 sec   (3555 perm/sec)   p_kst 1.440625e-03   p_cons 1.131250e-03   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.117836e-05	k: 0	n:330000
Cons ci ratio: 2.009756e-01	ci left: 1.035813e-03	ci right 1.270059e-03	k: 379	n:330000
KS ci ratio: 1.803033e-01	ci left: 1.301349e-03	ci right 1.562078e-03	k: 471	n:330000
ZNF567   330000 perm   94 sec   (3513 perm/sec)   p_kst 1.427273e-03   p_cons 1.148485e-03   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.084959e-05	k: 0	n:340000
Cons ci ratio: 1.986379e-01	ci left: 1.030493e-03	ci right 1.260498e-03	k: 388	n:340000
KS ci ratio: 1.780547e-01	ci left: 1.296785e-03	ci right 1.553010e-03	k: 483	n:340000
ZNF567   340000 perm   98 sec   (3470 perm/sec)   p_kst 1.420588e-03   p_cons 1.141176e-03   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 1.053960e-05	k: 0	n:350000
Cons ci ratio: 1.958877e-01	ci left: 1.030927e-03	ci right 1.257462e-03	k: 399	n:350000
KS ci ratio: 1.746583e-01	ci left: 1.311624e-03	ci right 1.565317e-03	k: 502	n:350000
ZNF567   350000 perm   102 sec   (3430 perm/sec)   p_kst 1.434286e-03   p_cons 1.140000e-03   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 1.024683e-05	k: 0	n:360000
Cons ci ratio: 1.927796e-01	ci left: 1.036645e-03	ci right 1.260398e-03	k: 412	n:360000
KS ci ratio: 1.719446e-01	ci left: 1.317707e-03	ci right 1.568206e-03	k: 518	n:360000
ZNF567   360000 perm   106 sec   (3391 perm/sec)   p_kst 1.438889e-03   p_cons 1.144444e-03   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 9.969895e-06	k: 0	n:370000
Cons ci ratio: 1.902627e-01	ci left: 1.036932e-03	ci right 1.257487e-03	k: 423	n:370000
KS ci ratio: 1.688801e-01	ci left: 1.331256e-03	ci right 1.579360e-03	k: 537	n:370000
ZNF567   370000 perm   110 sec   (3353 perm/sec)   p_kst 1.451351e-03   p_cons 1.143243e-03   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.707530e-06	k: 0	n:380000
Cons ci ratio: 1.878418e-01	ci left: 1.037221e-03	ci right 1.254711e-03	k: 434	n:380000
KS ci ratio: 1.671804e-01	ci left: 1.323952e-03	ci right 1.567962e-03	k: 548	n:380000
ZNF567   380000 perm   115 sec   (3316 perm/sec)   p_kst 1.442105e-03   p_cons 1.142105e-03   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.458621e-06	k: 0	n:390000
Cons ci ratio: 1.855110e-01	ci left: 1.037513e-03	ci right 1.252061e-03	k: 445	n:390000
KS ci ratio: 1.658279e-01	ci left: 1.312119e-03	ci right 1.551796e-03	k: 557	n:390000
ZNF567   390000 perm   119 sec   (3280 perm/sec)   p_kst 1.428205e-03   p_cons 1.141026e-03   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.222156e-06	k: 0	n:400000
Cons ci ratio: 1.836677e-01	ci left: 1.033035e-03	ci right 1.244298e-03	k: 454	n:400000
KS ci ratio: 1.642178e-01	ci left: 1.305680e-03	ci right 1.541637e-03	k: 568	n:400000
ZNF567   400000 perm   123 sec   (3244 perm/sec)   p_kst 1.420000e-03   p_cons 1.135000e-03   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 8.997226e-06	k: 0	n:410000
Cons ci ratio: 1.797575e-01	ci left: 1.054402e-03	ci right 1.264945e-03	k: 474	n:410000
KS ci ratio: 1.623737e-01	ci left: 1.304246e-03	ci right 1.537038e-03	k: 581	n:410000
ZNF567   410000 perm   128 sec   (3209 perm/sec)   p_kst 1.417073e-03   p_cons 1.156098e-03   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.783008e-06	k: 0	n:420000
Cons ci ratio: 1.773467e-01	ci left: 1.058867e-03	ci right 1.267161e-03	k: 487	n:420000
KS ci ratio: 1.600524e-01	ci left: 1.312036e-03	ci right 1.542549e-03	k: 598	n:420000
ZNF567   420000 perm   132 sec   (3175 perm/sec)   p_kst 1.423810e-03   p_cons 1.159524e-03   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.578753e-06	k: 0	n:430000
Cons ci ratio: 1.748558e-01	ci left: 1.065365e-03	ci right 1.271683e-03	k: 501	n:430000
KS ci ratio: 1.586034e-01	ci left: 1.306085e-03	ci right 1.533277e-03	k: 609	n:430000
ZNF567   430000 perm   137 sec   (3142 perm/sec)   p_kst 1.416279e-03   p_cons 1.165116e-03   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.383782e-06	k: 0	n:440000
Cons ci ratio: 1.726345e-01	ci left: 1.069413e-03	ci right 1.273610e-03	k: 514	n:440000
KS ci ratio: 1.563132e-01	ci left: 1.315699e-03	ci right 1.540949e-03	k: 627	n:440000
ZNF567   440000 perm   142 sec   (3108 perm/sec)   p_kst 1.425000e-03   p_cons 1.168182e-03   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.197476e-06	k: 0	n:450000
Cons ci ratio: 1.704958e-01	ci left: 1.073297e-03	ci right 1.275436e-03	k: 527	n:450000
KS ci ratio: 1.554505e-01	ci left: 1.301409e-03	ci right 1.522868e-03	k: 634	n:450000
ZNF567   450000 perm   146 sec   (3075 perm/sec)   p_kst 1.408889e-03   p_cons 1.171111e-03   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.019271e-06	k: 0	n:460000
Cons ci ratio: 1.690615e-01	ci left: 1.068698e-03	ci right 1.268105e-03	k: 536	n:460000
KS ci ratio: 1.538835e-01	ci left: 1.300285e-03	ci right 1.519116e-03	k: 647	n:460000
ZNF567   460000 perm   151 sec   (3043 perm/sec)   p_kst 1.406522e-03   p_cons 1.165217e-03   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.848649e-06	k: 0	n:470000
Cons ci ratio: 1.675094e-01	ci left: 1.066340e-03	ci right 1.263296e-03	k: 546	n:470000
KS ci ratio: 1.524785e-01	ci left: 1.297172e-03	ci right 1.513305e-03	k: 659	n:470000
ZNF567   470000 perm   156 sec   (3011 perm/sec)   p_kst 1.402128e-03   p_cons 1.161702e-03   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.685136e-06	k: 0	n:480000
Cons ci ratio: 1.649646e-01	ci left: 1.078069e-03	ci right 1.273866e-03	k: 563	n:480000
KS ci ratio: 1.508866e-01	ci left: 1.298207e-03	ci right 1.512050e-03	k: 673	n:480000
ZNF567   480000 perm   161 sec   (2981 perm/sec)   p_kst 1.402083e-03   p_cons 1.172917e-03   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.528297e-06	k: 0	n:490000
Cons ci ratio: 1.633792e-01	ci left: 1.077594e-03	ci right 1.271239e-03	k: 574	n:490000
KS ci ratio: 1.496706e-01	ci left: 1.293318e-03	ci right 1.504485e-03	k: 684	n:490000
ZNF567   490000 perm   166 sec   (2951 perm/sec)   p_kst 1.395918e-03   p_cons 1.171429e-03   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.377732e-06	k: 0	n:500000
Cons ci ratio: 1.629561e-01	ci left: 1.061796e-03	ci right 1.252060e-03	k: 577	n:500000
KS ci ratio: 1.485905e-01	ci left: 1.286705e-03	ci right 1.495141e-03	k: 694	n:500000
ZNF567   500000 perm   171 sec   (2922 perm/sec)   p_kst 1.388000e-03   p_cons 1.154000e-03   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.233071e-06	k: 0	n:510000
Cons ci ratio: 1.611536e-01	ci left: 1.065433e-03	ci right 1.254032e-03	k: 590	n:510000
KS ci ratio: 1.474289e-01	ci left: 1.282245e-03	ci right 1.488192e-03	k: 705	n:510000
ZNF567   510000 perm   176 sec   (2893 perm/sec)   p_kst 1.382353e-03   p_cons 1.156863e-03   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.093974e-06	k: 0	n:520000
Cons ci ratio: 1.584929e-01	ci left: 1.081868e-03	ci right 1.269914e-03	k: 610	n:520000
KS ci ratio: 1.463962e-01	ci left: 1.276110e-03	ci right 1.479510e-03	k: 715	n:520000
ZNF567   520000 perm   182 sec   (2864 perm/sec)   p_kst 1.375000e-03   p_cons 1.173077e-03   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.960126e-06	k: 0	n:530000
Cons ci ratio: 1.574659e-01	ci left: 1.075953e-03	ci right 1.261644e-03	k: 618	n:530000
KS ci ratio: 1.447871e-01	ci left: 1.281122e-03	ci right 1.482883e-03	k: 731	n:530000
ZNF567   530000 perm   187 sec   (2837 perm/sec)   p_kst 1.379245e-03   p_cons 1.166038e-03   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.831235e-06	k: 0	n:540000
Cons ci ratio: 1.554688e-01	ci left: 1.084498e-03	ci right 1.269069e-03	k: 634	n:540000
KS ci ratio: 1.430386e-01	ci left: 1.289531e-03	ci right 1.489954e-03	k: 749	n:540000
ZNF567   540000 perm   192 sec   (2810 perm/sec)   p_kst 1.387037e-03   p_cons 1.174074e-03   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.707031e-06	k: 0	n:550000
Cons ci ratio: 1.542592e-01	ci left: 1.082257e-03	ci right 1.264881e-03	k: 644	n:550000
KS ci ratio: 1.418149e-01	ci left: 1.288879e-03	ci right 1.487342e-03	k: 762	n:550000
ZNF567   550000 perm   198 sec   (2784 perm/sec)   p_kst 1.385455e-03   p_cons 1.170909e-03   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.587263e-06	k: 0	n:560000
Cons ci ratio: 1.523802e-01	ci left: 1.090407e-03	ci right 1.271960e-03	k: 660	n:560000
KS ci ratio: 1.403507e-01	ci left: 1.293426e-03	ci right 1.490361e-03	k: 778	n:560000
ZNF567   560000 perm   203 sec   (2758 perm/sec)   p_kst 1.389286e-03   p_cons 1.178571e-03   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.471697e-06	k: 0	n:570000
Cons ci ratio: 1.514669e-01	ci left: 1.084778e-03	ci right 1.264213e-03	k: 668	n:570000
KS ci ratio: 1.386692e-01	ci left: 1.302905e-03	ci right 1.498710e-03	k: 797	n:570000
ZNF567   570000 perm   209 sec   (2732 perm/sec)   p_kst 1.398246e-03   p_cons 1.171930e-03   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.360117e-06	k: 0	n:580000
Cons ci ratio: 1.506812e-01	ci left: 1.077687e-03	ci right 1.254942e-03	k: 675	n:580000
KS ci ratio: 1.373839e-01	ci left: 1.305410e-03	ci right 1.499625e-03	k: 812	n:580000
ZNF567   580000 perm   214 sec   (2707 perm/sec)   p_kst 1.400000e-03   p_cons 1.163793e-03   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.252319e-06	k: 0	n:590000
Cons ci ratio: 1.495791e-01	ci left: 1.075734e-03	ci right 1.251257e-03	k: 685	n:590000
KS ci ratio: 1.362986e-01	ci left: 1.304564e-03	ci right 1.496995e-03	k: 825	n:590000
ZNF567   590000 perm   220 sec   (2682 perm/sec)   p_kst 1.398305e-03   p_cons 1.161017e-03   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.148114e-06	k: 0	n:600000
Cons ci ratio: 1.486078e-01	ci left: 1.072245e-03	ci right 1.245962e-03	k: 694	n:600000
KS ci ratio: 1.346772e-01	ci left: 1.315025e-03	ci right 1.506507e-03	k: 845	n:600000
ZNF567   600000 perm   226 sec   (2658 perm/sec)   p_kst 1.408333e-03   p_cons 1.156667e-03   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 6.047325e-06	k: 0	n:610000
Cons ci ratio: 1.474456e-01	ci left: 1.072032e-03	ci right 1.244237e-03	k: 705	n:610000
KS ci ratio: 1.337323e-01	ci left: 1.312479e-03	ci right 1.502143e-03	k: 857	n:610000
ZNF567   610000 perm   232 sec   (2632 perm/sec)   p_kst 1.404918e-03   p_cons 1.155738e-03   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.949788e-06	k: 0	n:620000
Cons ci ratio: 1.461064e-01	ci left: 1.074939e-03	ci right 1.245906e-03	k: 718	n:620000
KS ci ratio: 1.324265e-01	ci left: 1.317817e-03	ci right 1.506246e-03	k: 874	n:620000
ZNF567   620000 perm   238 sec   (2609 perm/sec)   p_kst 1.409677e-03   p_cons 1.158065e-03   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.855347e-06	k: 0	n:630000
Cons ci ratio: 1.444086e-01	ci left: 1.083881e-03	ci right 1.254093e-03	k: 735	n:630000
KS ci ratio: 1.316022e-01	ci left: 1.313783e-03	ci right 1.500374e-03	k: 885	n:630000
ZNF567   630000 perm   244 sec   (2586 perm/sec)   p_kst 1.404762e-03   p_cons 1.166667e-03   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.763858e-06	k: 0	n:640000
Cons ci ratio: 1.432455e-01	ci left: 1.085020e-03	ci right 1.253922e-03	k: 747	n:640000
KS ci ratio: 1.304296e-01	ci left: 1.317435e-03	ci right 1.502750e-03	k: 901	n:640000
ZNF567   640000 perm   250 sec   (2564 perm/sec)   p_kst 1.407812e-03   p_cons 1.167188e-03   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.675183e-06	k: 0	n:650000
Cons ci ratio: 1.419232e-01	ci left: 1.089098e-03	ci right 1.256937e-03	k: 761	n:650000
KS ci ratio: 1.293584e-01	ci left: 1.319494e-03	ci right 1.503457e-03	k: 916	n:650000
ZNF567   650000 perm   256 sec   (2543 perm/sec)   p_kst 1.409231e-03   p_cons 1.170769e-03   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.589196e-06	k: 0	n:660000
Cons ci ratio: 1.411845e-01	ci left: 1.084288e-03	ci right 1.250443e-03	k: 769	n:660000
KS ci ratio: 1.286591e-01	ci left: 1.314164e-03	ci right 1.496318e-03	k: 926	n:660000
ZNF567   660000 perm   262 sec   (2522 perm/sec)   p_kst 1.403030e-03   p_cons 1.165152e-03   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.505775e-06	k: 0	n:670000
Cons ci ratio: 1.397396e-01	ci left: 1.091146e-03	ci right 1.256499e-03	k: 785	n:670000
KS ci ratio: 1.277665e-01	ci left: 1.313331e-03	ci right 1.494010e-03	k: 939	n:670000
ZNF567   670000 perm   268 sec   (2501 perm/sec)   p_kst 1.401493e-03   p_cons 1.171642e-03   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.424808e-06	k: 0	n:680000
Cons ci ratio: 1.390342e-01	ci left: 1.086454e-03	ci right 1.250196e-03	k: 793	n:680000
KS ci ratio: 1.269589e-01	ci left: 1.311102e-03	ci right 1.490248e-03	k: 951	n:680000
ZNF567   680000 perm   274 sec   (2480 perm/sec)   p_kst 1.398529e-03   p_cons 1.166176e-03   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.346188e-06	k: 0	n:690000
Cons ci ratio: 1.381671e-01	ci left: 1.084699e-03	ci right 1.247072e-03	k: 803	n:690000
KS ci ratio: 1.266939e-01	ci left: 1.297713e-03	ci right 1.474632e-03	k: 955	n:690000
ZNF567   690000 perm   281 sec   (2460 perm/sec)   p_kst 1.384058e-03   p_cons 1.163768e-03   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.269814e-06	k: 0	n:700000
Cons ci ratio: 1.374851e-01	ci left: 1.080237e-03	ci right 1.241079e-03	k: 811	n:700000
KS ci ratio: 1.253885e-01	ci left: 1.306845e-03	ci right 1.483037e-03	k: 975	n:700000
ZNF567   700000 perm   287 sec   (2439 perm/sec)   p_kst 1.392857e-03   p_cons 1.158571e-03   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.195591e-06	k: 0	n:710000
Cons ci ratio: 1.366464e-01	ci left: 1.078624e-03	ci right 1.238167e-03	k: 821	n:710000
KS ci ratio: 1.247514e-01	ci left: 1.302082e-03	ci right 1.476674e-03	k: 985	n:710000
ZNF567   710000 perm   293 sec   (2420 perm/sec)   p_kst 1.387324e-03   p_cons 1.156338e-03   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 5.123431e-06	k: 0	n:720000
Cons ci ratio: 1.350130e-01	ci left: 1.090478e-03	ci right 1.249690e-03	k: 841	n:720000
KS ci ratio: 1.241239e-01	ci left: 1.297454e-03	ci right 1.470486e-03	k: 995	n:720000
ZNF567   720000 perm   300 sec   (2400 perm/sec)   p_kst 1.381944e-03   p_cons 1.168056e-03   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 5.053247e-06	k: 0	n:730000
Cons ci ratio: 1.344557e-01	ci left: 1.084805e-03	ci right 1.242484e-03	k: 848	n:730000
KS ci ratio: 1.232606e-01	ci left: 1.298266e-03	ci right 1.470114e-03	k: 1009	n:730000
ZNF567   730000 perm   307 sec   (2381 perm/sec)   p_kst 1.382192e-03   p_cons 1.161644e-03   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.984960e-06	k: 0	n:740000
Cons ci ratio: 1.335154e-01	ci left: 1.085818e-03	ci right 1.242453e-03	k: 860	n:740000
KS ci ratio: 1.224151e-01	ci left: 1.299059e-03	ci right 1.469747e-03	k: 1023	n:740000
ZNF567   740000 perm   313 sec   (2362 perm/sec)   p_kst 1.382432e-03   p_cons 1.162162e-03   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.918494e-06	k: 0	n:750000
Cons ci ratio: 1.319155e-01	ci left: 1.098412e-03	ci right 1.254815e-03	k: 881	n:750000
KS ci ratio: 1.217042e-01	ci left: 1.297250e-03	ci right 1.466639e-03	k: 1035	n:750000
ZNF567   750000 perm   320 sec   (2342 perm/sec)   p_kst 1.380000e-03   p_cons 1.174667e-03   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.853777e-06	k: 0	n:760000
Cons ci ratio: 1.307347e-01	ci left: 1.104320e-03	ci right 1.260048e-03	k: 897	n:760000
KS ci ratio: 1.208902e-01	ci left: 1.298043e-03	ci right 1.466321e-03	k: 1049	n:760000
ZNF567   760000 perm   327 sec   (2324 perm/sec)   p_kst 1.380263e-03   p_cons 1.180263e-03   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.790741e-06	k: 0	n:770000
Cons ci ratio: 1.302285e-01	ci left: 1.098772e-03	ci right 1.253072e-03	k: 904	n:770000
KS ci ratio: 1.197545e-01	ci left: 1.306378e-03	ci right 1.474033e-03	k: 1069	n:770000
ZNF567   770000 perm   334 sec   (2306 perm/sec)   p_kst 1.388312e-03   p_cons 1.174026e-03   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.729321e-06	k: 0	n:780000
Cons ci ratio: 1.295151e-01	ci left: 1.097089e-03	ci right 1.250244e-03	k: 914	n:780000
KS ci ratio: 1.190337e-01	ci left: 1.305798e-03	ci right 1.472299e-03	k: 1082	n:780000
ZNF567   780000 perm   341 sec   (2288 perm/sec)   p_kst 1.387179e-03   p_cons 1.171795e-03   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.669457e-06	k: 0	n:790000
Cons ci ratio: 1.290930e-01	ci left: 1.090551e-03	ci right 1.242258e-03	k: 920	n:790000
KS ci ratio: 1.178956e-01	ci left: 1.315064e-03	ci right 1.481032e-03	k: 1103	n:790000
ZNF567   790000 perm   348 sec   (2271 perm/sec)   p_kst 1.396203e-03   p_cons 1.164557e-03   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.611089e-06	k: 0	n:800000
Cons ci ratio: 1.283290e-01	ci left: 1.090227e-03	ci right 1.240923e-03	k: 931	n:800000
KS ci ratio: 1.172602e-01	ci left: 1.313184e-03	ci right 1.477960e-03	k: 1115	n:800000
ZNF567   800000 perm   355 sec   (2253 perm/sec)   p_kst 1.393750e-03   p_cons 1.163750e-03   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.554162e-06	k: 0	n:810000
Cons ci ratio: 1.271739e-01	ci left: 1.097084e-03	ci right 1.247260e-03	k: 948	n:810000
KS ci ratio: 1.164284e-01	ci left: 1.316148e-03	ci right 1.480043e-03	k: 1131	n:810000
ZNF567   810000 perm   362 sec   (2236 perm/sec)   p_kst 1.396296e-03   p_cons 1.170370e-03   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.498623e-06	k: 0	n:820000
Cons ci ratio: 1.265093e-01	ci left: 1.095513e-03	ci right 1.244632e-03	k: 958	n:820000
KS ci ratio: 1.158163e-01	ci left: 1.314307e-03	ci right 1.477053e-03	k: 1143	n:820000
ZNF567   820000 perm   369 sec   (2219 perm/sec)   p_kst 1.393902e-03   p_cons 1.168293e-03   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.444423e-06	k: 0	n:830000
Cons ci ratio: 1.253380e-01	ci left: 1.103318e-03	ci right 1.252006e-03	k: 976	n:830000
KS ci ratio: 1.151639e-01	ci left: 1.313682e-03	ci right 1.475372e-03	k: 1156	n:830000
ZNF567   830000 perm   377 sec   (2203 perm/sec)   p_kst 1.392771e-03   p_cons 1.175904e-03   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.391514e-06	k: 0	n:840000
Cons ci ratio: 1.245753e-01	ci left: 1.104023e-03	ci right 1.251833e-03	k: 988	n:840000
KS ci ratio: 1.145223e-01	ci left: 1.313074e-03	ci right 1.473729e-03	k: 1169	n:840000
ZNF567   840000 perm   384 sec   (2187 perm/sec)   p_kst 1.391667e-03   p_cons 1.176190e-03   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.339849e-06	k: 0	n:850000
Cons ci ratio: 1.240747e-01	ci left: 1.100153e-03	ci right 1.246810e-03	k: 996	n:850000
KS ci ratio: 1.139397e-01	ci left: 1.311341e-03	ci right 1.470912e-03	k: 1181	n:850000
ZNF567   850000 perm   391 sec   (2171 perm/sec)   p_kst 1.389412e-03   p_cons 1.171765e-03   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.289386e-06	k: 0	n:860000
Cons ci ratio: 1.234573e-01	ci left: 1.098628e-03	ci right 1.244300e-03	k: 1006	n:860000
KS ci ratio: 1.135087e-01	ci left: 1.306260e-03	ci right 1.464571e-03	k: 1190	n:860000
ZNF567   860000 perm   399 sec   (2156 perm/sec)   p_kst 1.383721e-03   p_cons 1.169767e-03   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.240082e-06	k: 0	n:870000
Cons ci ratio: 1.224877e-01	ci left: 1.103826e-03	ci right 1.248954e-03	k: 1022	n:870000
KS ci ratio: 1.131297e-01	ci left: 1.300180e-03	ci right 1.457193e-03	k: 1198	n:870000
ZNF567   870000 perm   406 sec   (2140 perm/sec)   p_kst 1.377011e-03   p_cons 1.174713e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.191900e-06	k: 0	n:880000
Cons ci ratio: 1.219526e-01	ci left: 1.101197e-03	ci right 1.245301e-03	k: 1031	n:880000
KS ci ratio: 1.123360e-01	ci left: 1.304179e-03	ci right 1.460497e-03	k: 1215	n:880000
ZNF567   880000 perm   414 sec   (2125 perm/sec)   p_kst 1.380682e-03   p_cons 1.171591e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.144800e-06	k: 0	n:890000
Cons ci ratio: 1.211916e-01	ci left: 1.102986e-03	ci right 1.246359e-03	k: 1044	n:890000
KS ci ratio: 1.116040e-01	ci left: 1.306999e-03	ci right 1.462567e-03	k: 1231	n:890000
ZNF567   890000 perm   422 sec   (2110 perm/sec)   p_kst 1.383146e-03   p_cons 1.173034e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.098747e-06	k: 0	n:900000
Cons ci ratio: 1.202741e-01	ci left: 1.107972e-03	ci right 1.250825e-03	k: 1060	n:900000
KS ci ratio: 1.111092e-01	ci left: 1.304359e-03	ci right 1.458879e-03	k: 1242	n:900000
ZNF567   900000 perm   430 sec   (2095 perm/sec)   p_kst 1.380000e-03   p_cons 1.177778e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.053705e-06	k: 0	n:910000
Cons ci ratio: 1.195996e-01	ci left: 1.108588e-03	ci right 1.250662e-03	k: 1072	n:910000
KS ci ratio: 1.107538e-01	ci left: 1.298572e-03	ci right 1.451883e-03	k: 1250	n:910000
ZNF567   910000 perm   437 sec   (2080 perm/sec)   p_kst 1.373626e-03   p_cons 1.178022e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.009644e-06	k: 0	n:920000
Cons ci ratio: 1.190463e-01	ci left: 1.107083e-03	ci right 1.248262e-03	k: 1082	n:920000
KS ci ratio: 1.101392e-01	ci left: 1.299254e-03	ci right 1.451739e-03	k: 1264	n:920000
ZNF567   920000 perm   445 sec   (2066 perm/sec)   p_kst 1.373913e-03   p_cons 1.176087e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.966529e-06	k: 0	n:930000
Cons ci ratio: 1.183922e-01	ci left: 1.107699e-03	ci right 1.248126e-03	k: 1094	n:930000
KS ci ratio: 1.095347e-01	ci left: 1.299924e-03	ci right 1.451596e-03	k: 1278	n:930000
ZNF567   930000 perm   453 sec   (2052 perm/sec)   p_kst 1.374194e-03   p_cons 1.176344e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.924332e-06	k: 0	n:940000
Cons ci ratio: 1.176955e-01	ci left: 1.109336e-03	ci right 1.249086e-03	k: 1107	n:940000
KS ci ratio: 1.087717e-01	ci left: 1.304721e-03	ci right 1.455825e-03	k: 1296	n:940000
ZNF567   940000 perm   461 sec   (2037 perm/sec)   p_kst 1.378723e-03   p_cons 1.177660e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.883023e-06	k: 0	n:950000
Cons ci ratio: 1.169588e-01	ci left: 1.111964e-03	ci right 1.251106e-03	k: 1121	n:950000
KS ci ratio: 1.083966e-01	ci left: 1.300204e-03	ci right 1.450232e-03	k: 1305	n:950000
ZNF567   950000 perm   470 sec   (2023 perm/sec)   p_kst 1.373684e-03   p_cons 1.180000e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.842575e-06	k: 0	n:960000
Cons ci ratio: 1.164927e-01	ci left: 1.109482e-03	ci right 1.247723e-03	k: 1130	n:960000
KS ci ratio: 1.080253e-01	ci left: 1.295781e-03	ci right 1.444754e-03	k: 1314	n:960000
ZNF567   960000 perm   478 sec   (2008 perm/sec)   p_kst 1.368750e-03   p_cons 1.177083e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.802961e-06	k: 0	n:970000
Cons ci ratio: 1.158288e-01	ci left: 1.111057e-03	ci right 1.248651e-03	k: 1143	n:970000
KS ci ratio: 1.076985e-01	ci left: 1.290447e-03	ci right 1.438329e-03	k: 1322	n:970000
ZNF567   970000 perm   486 sec   (1995 perm/sec)   p_kst 1.362887e-03   p_cons 1.178351e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.764156e-06	k: 0	n:980000
Cons ci ratio: 1.153260e-01	ci left: 1.109628e-03	ci right 1.246409e-03	k: 1153	n:980000
KS ci ratio: 1.069730e-01	ci left: 1.295154e-03	ci right 1.442513e-03	k: 1340	n:980000
ZNF567   980000 perm   495 sec   (1981 perm/sec)   p_kst 1.367347e-03   p_cons 1.176531e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.726134e-06	k: 0	n:990000
Cons ci ratio: 1.147803e-01	ci left: 1.109211e-03	ci right 1.245249e-03	k: 1164	n:990000
KS ci ratio: 1.066952e-01	ci left: 1.288953e-03	ci right 1.435202e-03	k: 1347	n:990000
ZNF567   990000 perm   503 sec   (1967 perm/sec)   p_kst 1.360606e-03   p_cons 1.175758e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.688873e-06	k: 0	n:1000000
Cons ci ratio: 1.141451e-01	ci left: 1.110747e-03	ci right 1.246169e-03	k: 1177	n:1000000
KS ci ratio: 1.063019e-01	ci left: 1.285797e-03	ci right 1.431116e-03	k: 1357	n:1000000
ZNF567   1000000 perm   512 sec   (1954 perm/sec)   p_kst 1.357000e-03   p_cons 1.177000e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.652349e-06	k: 0	n:1010000
Cons ci ratio: 1.134251e-01	ci left: 1.114178e-03	ci right 1.249104e-03	k: 1192	n:1010000
KS ci ratio: 1.058741e-01	ci left: 1.283668e-03	ci right 1.428127e-03	k: 1368	n:1010000
ZNF567   1010000 perm   520 sec   (1941 perm/sec)   p_kst 1.354455e-03   p_cons 1.180198e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.616542e-06	k: 0	n:1020000
Cons ci ratio: 1.127185e-01	ci left: 1.117545e-03	ci right 1.251980e-03	k: 1207	n:1020000
KS ci ratio: 1.054897e-01	ci left: 1.280628e-03	ci right 1.424189e-03	k: 1378	n:1020000
ZNF567   1020000 perm   529 sec   (1928 perm/sec)   p_kst 1.350980e-03   p_cons 1.183333e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.581430e-06	k: 0	n:1030000
Cons ci ratio: 1.121627e-01	ci left: 1.118018e-03	ci right 1.251803e-03	k: 1219	n:1030000
KS ci ratio: 1.049582e-01	ci left: 1.281429e-03	ci right 1.424311e-03	k: 1392	n:1030000
ZNF567   1030000 perm   538 sec   (1915 perm/sec)   p_kst 1.351456e-03   p_cons 1.183495e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.546993e-06	k: 0	n:1040000
Cons ci ratio: 1.113440e-01	ci left: 1.124092e-03	ci right 1.257557e-03	k: 1237	n:1040000
KS ci ratio: 1.041755e-01	ci left: 1.288772e-03	ci right 1.431336e-03	k: 1413	n:1040000
ZNF567   1040000 perm   547 sec   (1903 perm/sec)   p_kst 1.358654e-03   p_cons 1.189423e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.513212e-06	k: 0	n:1050000
Cons ci ratio: 1.108083e-01	ci left: 1.124497e-03	ci right 1.257326e-03	k: 1249	n:1050000
KS ci ratio: 1.034462e-01	ci left: 1.295051e-03	ci right 1.437246e-03	k: 1433	n:1050000
ZNF567   1050000 perm   556 sec   (1890 perm/sec)   p_kst 1.364762e-03   p_cons 1.189524e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.480069e-06	k: 0	n:1060000
Cons ci ratio: 1.104117e-01	ci left: 1.122145e-03	ci right 1.254190e-03	k: 1258	n:1060000
KS ci ratio: 1.029093e-01	ci left: 1.296620e-03	ci right 1.438203e-03	k: 1448	n:1060000
ZNF567   1060000 perm   564 sec   (1878 perm/sec)   p_kst 1.366038e-03   p_cons 1.186792e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.447545e-06	k: 0	n:1070000
Cons ci ratio: 1.098892e-01	ci left: 1.122563e-03	ci right 1.253993e-03	k: 1270	n:1070000
KS ci ratio: 1.023107e-01	ci left: 1.299982e-03	ci right 1.441057e-03	k: 1465	n:1070000
ZNF567   1070000 perm   573 sec   (1866 perm/sec)   p_kst 1.369159e-03   p_cons 1.186916e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.415623e-06	k: 0	n:1080000
Cons ci ratio: 1.093314e-01	ci left: 1.123876e-03	ci right 1.254748e-03	k: 1283	n:1080000
KS ci ratio: 1.019637e-01	ci left: 1.296968e-03	ci right 1.437210e-03	k: 1475	n:1080000
ZNF567   1080000 perm   582 sec   (1854 perm/sec)   p_kst 1.365741e-03   p_cons 1.187963e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.384287e-06	k: 0	n:1090000
Cons ci ratio: 1.088661e-01	ci left: 1.123382e-03	ci right 1.253604e-03	k: 1294	n:1090000
KS ci ratio: 1.015860e-01	ci left: 1.294904e-03	ci right 1.434373e-03	k: 1486	n:1090000
ZNF567   1090000 perm   591 sec   (1843 perm/sec)   p_kst 1.363303e-03   p_cons 1.187156e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.353521e-06	k: 0	n:1100000
Cons ci ratio: 1.085316e-01	ci left: 1.120244e-03	ci right 1.249678e-03	k: 1302	n:1100000
KS ci ratio: 1.010101e-01	ci left: 1.298195e-03	ci right 1.437179e-03	k: 1503	n:1100000
ZNF567   1100000 perm   601 sec   (1831 perm/sec)   p_kst 1.366364e-03   p_cons 1.183636e-03   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.323309e-06	k: 0	n:1110000
Cons ci ratio: 1.081176e-01	ci left: 1.118917e-03	ci right 1.247673e-03	k: 1312	n:1110000
KS ci ratio: 1.006096e-01	ci left: 1.297038e-03	ci right 1.435315e-03	k: 1515	n:1110000
ZNF567   1110000 perm   610 sec   (1820 perm/sec)   p_kst 1.364865e-03   p_cons 1.181982e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.293637e-06	k: 0	n:1120000
Cons ci ratio: 1.074242e-01	ci left: 1.123696e-03	ci right 1.252120e-03	k: 1329	n:1120000
KS ci ratio: 1.000828e-01	ci left: 1.299384e-03	ci right 1.437143e-03	k: 1531	n:1120000
ZNF567   1120000 perm   619 sec   (1809 perm/sec)   p_kst 1.366964e-03   p_cons 1.186607e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.264490e-06	k: 0	n:1130000
Cons ci ratio: 1.070227e-01	ci left: 1.122364e-03	ci right 1.250126e-03	k: 1339	n:1130000
KS ci ratio: 9.975787e-02	ci left: 1.296514e-03	ci right 1.433496e-03	k: 1541	n:1130000
ZNF567   1130000 perm   628 sec   (1798 perm/sec)   p_kst 1.363717e-03   p_cons 1.184956e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.235854e-06	k: 0	n:1140000
Cons ci ratio: 1.062325e-01	ci left: 1.129595e-03	ci right 1.257172e-03	k: 1359	n:1140000
KS ci ratio: 9.918048e-02	ci left: 1.300538e-03	ci right 1.437104e-03	k: 1559	n:1140000
ZNF567   1140000 perm   638 sec   (1787 perm/sec)   p_kst 1.367544e-03   p_cons 1.192105e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.207716e-06	k: 0	n:1150000
Cons ci ratio: 1.056898e-01	ci left: 1.131624e-03	ci right 1.258736e-03	k: 1373	n:1150000
KS ci ratio: 9.870701e-02	ci left: 1.301949e-03	ci right 1.437973e-03	k: 1574	n:1150000
ZNF567   1150000 perm   647 sec   (1777 perm/sec)   p_kst 1.368696e-03   p_cons 1.193913e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.180063e-06	k: 0	n:1160000
Cons ci ratio: 1.053836e-01	ci left: 1.128583e-03	ci right 1.254964e-03	k: 1381	n:1160000
KS ci ratio: 7.965162e-02	ci left: 2.000610e-03	ci right 2.167409e-03	k: 2416	n:1160000
ZNF567   1160000 perm   657 sec   (1766 perm/sec)   p_kst 2.082759e-03   p_cons 1.190517e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.152883e-06	k: 0	n:1170000
Cons ci ratio: 1.051179e-01	ci left: 1.124762e-03	ci right 1.250378e-03	k: 1388	n:1170000
KS ci ratio: 7.934045e-02	ci left: 1.999427e-03	ci right 2.165447e-03	k: 2435	n:1170000
ZNF567   1170000 perm   666 sec   (1756 perm/sec)   p_kst 2.081197e-03   p_cons 1.186325e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.126164e-06	k: 0	n:1180000
Cons ci ratio: 1.047042e-01	ci left: 1.124308e-03	ci right 1.249348e-03	k: 1399	n:1180000
KS ci ratio: 7.912985e-02	ci left: 1.993281e-03	ci right 2.158331e-03	k: 2448	n:1180000
ZNF567   1180000 perm   676 sec   (1746 perm/sec)   p_kst 2.074576e-03   p_cons 1.185593e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.099894e-06	k: 0	n:1190000
Cons ci ratio: 1.041108e-01	ci left: 1.127954e-03	ci right 1.252645e-03	k: 1415	n:1190000
KS ci ratio: 7.880873e-02	ci left: 1.993006e-03	ci right 2.157332e-03	k: 2468	n:1190000
ZNF567   1190000 perm   686 sec   (1735 perm/sec)   p_kst 2.073950e-03   p_cons 1.189076e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.074061e-06	k: 0	n:1200000
Cons ci ratio: 1.037088e-01	ci left: 1.127483e-03	ci right 1.251612e-03	k: 1426	n:1200000
KS ci ratio: 7.849149e-02	ci left: 1.992736e-03	ci right 2.156349e-03	k: 2488	n:1200000
ZNF567   1200000 perm   695 sec   (1725 perm/sec)   p_kst 2.073333e-03   p_cons 1.188333e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.048656e-06	k: 0	n:1210000
Cons ci ratio: 1.030963e-01	ci left: 1.131851e-03	ci right 1.255680e-03	k: 1443	n:1210000
KS ci ratio: 7.817805e-02	ci left: 1.992472e-03	ci right 2.155380e-03	k: 2508	n:1210000
ZNF567   1210000 perm   705 sec   (1716 perm/sec)   p_kst 2.072727e-03   p_cons 1.192562e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.023667e-06	k: 0	n:1220000
Cons ci ratio: 1.028475e-01	ci left: 1.128163e-03	ci right 1.251273e-03	k: 1450	n:1220000
KS ci ratio: 7.791465e-02	ci left: 1.989803e-03	ci right 2.151920e-03	k: 2525	n:1220000
ZNF567   1220000 perm   715 sec   (1706 perm/sec)   p_kst 2.069672e-03   p_cons 1.188525e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.999084e-06	k: 0	n:1230000
Cons ci ratio: 1.024950e-01	ci left: 1.126913e-03	ci right 1.249439e-03	k: 1460	n:1230000
KS ci ratio: 7.762332e-02	ci left: 1.988772e-03	ci right 2.150172e-03	k: 2544	n:1230000
ZNF567   1230000 perm   725 sec   (1696 perm/sec)   p_kst 2.068293e-03   p_cons 1.186992e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.974898e-06	k: 0	n:1240000
Cons ci ratio: 1.020767e-01	ci left: 1.127255e-03	ci right 1.249288e-03	k: 1472	n:1240000
KS ci ratio: 7.738061e-02	ci left: 1.985387e-03	ci right 2.145985e-03	k: 2560	n:1240000
ZNF567   1240000 perm   735 sec   (1687 perm/sec)   p_kst 2.064516e-03   p_cons 1.187097e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.951099e-06	k: 0	n:1250000
Cons ci ratio: 1.014584e-01	ci left: 1.132270e-03	ci right 1.254060e-03	k: 1490	n:1250000
KS ci ratio: 7.714016e-02	ci left: 1.982056e-03	ci right 2.141865e-03	k: 2576	n:1250000
ZNF567   1250000 perm   745 sec   (1677 perm/sec)   p_kst 2.060800e-03   p_cons 1.192000e-03   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.927678e-06	k: 0	n:1260000
Cons ci ratio: 1.007510e-01	ci left: 1.139529e-03	ci right 1.261195e-03	k: 1511	n:1260000
KS ci ratio: 7.681294e-02	ci left: 1.983450e-03	ci right 2.142662e-03	k: 2598	n:1260000
ZNF567   1260000 perm   755 sec   (1668 perm/sec)   p_kst 2.061905e-03   p_cons 1.199206e-03   p_joint 0

Joint ci ratio: 9.799934e-01	ci left: 6.610555e-06	ci right 1.948041e-05	k: 15	n:1270000
Cons ci ratio: 1.003206e-01	ci left: 1.140536e-03	ci right 1.261758e-03	k: 1524	n:1270000
KS ci ratio: 7.647523e-02	ci left: 1.985596e-03	ci right 2.144248e-03	k: 2621	n:1270000
ZNF567   1270000 perm   766 sec   (1659 perm/sec)   p_kst 2.063780e-03   p_cons 1.200000e-03   p_joint 1.181102e-05

Joint ci ratio: 9.799935e-01	ci left: 6.558910e-06	ci right 1.932822e-05	k: 15	n:1280000
Cons ci ratio: 1.000586e-01	ci left: 1.137718e-03	ci right 1.258307e-03	k: 1532	n:1280000
KS ci ratio: 7.617079e-02	ci left: 1.986176e-03	ci right 2.144215e-03	k: 2642	n:1280000
ZNF567   1280000 perm   776 sec   (1650 perm/sec)   p_kst 2.064062e-03   p_cons 1.196875e-03   p_joint 1.171875e-05

Joint ci ratio: 9.799935e-01	ci left: 6.508065e-06	ci right 1.917839e-05	k: 15	n:1290000
Cons ci ratio: 9.957256e-02	ci left: 1.140237e-03	ci right 1.260471e-03	k: 1547	n:1290000
KS ci ratio: 7.594141e-02	ci left: 1.982947e-03	ci right 2.140233e-03	k: 2658	n:1290000
ZNF567   1290000 perm   786 sec   (1641 perm/sec)   p_kst 2.060465e-03   p_cons 1.199225e-03   p_joint 1.162791e-05

Joint ci ratio: 9.799936e-01	ci left: 6.458003e-06	ci right 1.903087e-05	k: 15	n:1300000
Cons ci ratio: 9.928448e-02	ci left: 1.138216e-03	ci right 1.257870e-03	k: 1556	n:1300000
KS ci ratio: 7.572828e-02	ci left: 1.979013e-03	ci right 2.135527e-03	k: 2673	n:1300000
ZNF567   1300000 perm   797 sec   (1632 perm/sec)   p_kst 2.056154e-03   p_cons 1.196923e-03   p_joint 1.153846e-05

Joint ci ratio: 9.799936e-01	ci left: 6.408705e-06	ci right 1.888559e-05	k: 15	n:1310000
Cons ci ratio: 9.890408e-02	ci left: 1.138461e-03	ci right 1.257655e-03	k: 1568	n:1310000
KS ci ratio: 7.539061e-02	ci left: 1.981880e-03	ci right 2.137891e-03	k: 2697	n:1310000
ZNF567   1310000 perm   807 sec   (1623 perm/sec)   p_kst 2.058779e-03   p_cons 1.196947e-03   p_joint 1.145038e-05

Joint ci ratio: 9.799937e-01	ci left: 6.360155e-06	ci right 1.874252e-05	k: 15	n:1320000
Cons ci ratio: 9.843455e-02	ci left: 1.140920e-03	ci right 1.259771e-03	k: 1583	n:1320000
KS ci ratio: 7.507123e-02	ci left: 1.983963e-03	ci right 2.139447e-03	k: 2720	n:1320000
ZNF567   1320000 perm   818 sec   (1614 perm/sec)   p_kst 2.060606e-03   p_cons 1.199242e-03   p_joint 1.136364e-05

Joint ci ratio: 9.799937e-01	ci left: 6.312334e-06	ci right 1.860160e-05	k: 15	n:1330000
Cons ci ratio: 9.818707e-02	ci left: 1.138208e-03	ci right 1.256462e-03	k: 1591	n:1330000
KS ci ratio: 7.481054e-02	ci left: 1.983064e-03	ci right 2.137915e-03	k: 2739	n:1330000
ZNF567   1330000 perm   829 sec   (1605 perm/sec)   p_kst 2.059398e-03   p_cons 1.196241e-03   p_joint 1.127820e-05

Joint ci ratio: 9.799938e-01	ci left: 6.265227e-06	ci right 1.846278e-05	k: 15	n:1340000
Cons ci ratio: 9.766681e-02	ci left: 1.142090e-03	ci right 1.260083e-03	k: 1608	n:1340000
KS ci ratio: 7.445796e-02	ci left: 1.987306e-03	ci right 2.141725e-03	k: 2765	n:1340000
ZNF567   1340000 perm   840 sec   (1596 perm/sec)   p_kst 2.063433e-03   p_cons 1.200000e-03   p_joint 1.119403e-05

Joint ci ratio: 9.799938e-01	ci left: 6.218817e-06	ci right 1.832602e-05	k: 15	n:1350000
Cons ci ratio: 9.748543e-02	ci left: 1.137966e-03	ci right 1.255302e-03	k: 1614	n:1350000
KS ci ratio: 7.420358e-02	ci left: 1.986397e-03	ci right 2.140196e-03	k: 2784	n:1350000
ZNF567   1350000 perm   850 sec   (1588 perm/sec)   p_kst 2.062222e-03   p_cons 1.195556e-03   p_joint 1.111111e-05

Joint ci ratio: 9.799939e-01	ci left: 6.173091e-06	ci right 1.819127e-05	k: 15	n:1360000
Cons ci ratio: 9.700595e-02	ci left: 1.141077e-03	ci right 1.258122e-03	k: 1630	n:1360000
KS ci ratio: 7.392538e-02	ci left: 1.986947e-03	ci right 2.140186e-03	k: 2805	n:1360000
ZNF567   1360000 perm   861 sec   (1579 perm/sec)   p_kst 2.062500e-03   p_cons 1.198529e-03   p_joint 1.102941e-05

Joint ci ratio: 9.799939e-01	ci left: 6.128032e-06	ci right 1.805849e-05	k: 15	n:1370000
Cons ci ratio: 9.665104e-02	ci left: 1.141295e-03	ci right 1.257910e-03	k: 1642	n:1370000
KS ci ratio: 7.362420e-02	ci left: 1.988922e-03	ci right 2.141662e-03	k: 2828	n:1370000
ZNF567   1370000 perm   872 sec   (1571 perm/sec)   p_kst 2.064234e-03   p_cons 1.198540e-03   p_joint 1.094891e-05

Joint ci ratio: 9.799940e-01	ci left: 6.083625e-06	ci right 1.792763e-05	k: 15	n:1380000
Cons ci ratio: 9.632915e-02	ci left: 1.140804e-03	ci right 1.256958e-03	k: 1653	n:1380000
KS ci ratio: 7.327519e-02	ci left: 1.993716e-03	ci right 2.146067e-03	k: 2855	n:1380000
ZNF567   1380000 perm   883 sec   (1563 perm/sec)   p_kst 2.068841e-03   p_cons 1.197826e-03   p_joint 1.086957e-05

Joint ci ratio: 9.799940e-01	ci left: 6.039858e-06	ci right 1.779866e-05	k: 15	n:1390000
Cons ci ratio: 9.606824e-02	ci left: 1.138916e-03	ci right 1.254546e-03	k: 1662	n:1390000
KS ci ratio: 7.307092e-02	ci left: 1.990672e-03	ci right 2.142349e-03	k: 2871	n:1390000
ZNF567   1390000 perm   894 sec   (1555 perm/sec)   p_kst 2.065468e-03   p_cons 1.195683e-03   p_joint 1.079137e-05

Joint ci ratio: 9.799940e-01	ci left: 5.996716e-06	ci right 1.767152e-05	k: 15	n:1400000
Cons ci ratio: 9.583813e-02	ci left: 1.136358e-03	ci right 1.251436e-03	k: 1670	n:1400000
KS ci ratio: 7.288099e-02	ci left: 1.986972e-03	ci right 2.137957e-03	k: 2886	n:1400000
ZNF567   1400000 perm   905 sec   (1547 perm/sec)   p_kst 2.061429e-03   p_cons 1.192857e-03   p_joint 1.071429e-05

Joint ci ratio: 9.799941e-01	ci left: 5.954186e-06	ci right 1.754619e-05	k: 15	n:1410000
Cons ci ratio: 9.555271e-02	ci left: 1.135221e-03	ci right 1.249823e-03	k: 1680	n:1410000
KS ci ratio: 7.257985e-02	ci left: 1.989592e-03	ci right 2.140125e-03	k: 2910	n:1410000
ZNF567   1410000 perm   916 sec   (1539 perm/sec)   p_kst 2.063830e-03   p_cons 1.191489e-03   p_joint 1.063830e-05

Joint ci ratio: 9.799941e-01	ci left: 5.912255e-06	ci right 1.742263e-05	k: 15	n:1420000
Cons ci ratio: 9.524163e-02	ci left: 1.134788e-03	ci right 1.248952e-03	k: 1691	n:1420000
KS ci ratio: 7.229474e-02	ci left: 1.991484e-03	ci right 2.141544e-03	k: 2933	n:1420000
ZNF567   1420000 perm   927 sec   (1531 perm/sec)   p_kst 2.065493e-03   p_cons 1.190845e-03   p_joint 1.056338e-05

Joint ci ratio: 9.799942e-01	ci left: 5.870911e-06	ci right 1.730079e-05	k: 15	n:1430000
Cons ci ratio: 9.490568e-02	ci left: 1.135044e-03	ci right 1.248810e-03	k: 1703	n:1430000
KS ci ratio: 7.206183e-02	ci left: 1.990605e-03	ci right 2.140095e-03	k: 2952	n:1430000
ZNF567   1430000 perm   939 sec   (1523 perm/sec)   p_kst 2.064336e-03   p_cons 1.190909e-03   p_joint 1.048951e-05

Joint ci ratio: 9.799942e-01	ci left: 5.830141e-06	ci right 1.718065e-05	k: 15	n:1440000
Cons ci ratio: 9.460086e-02	ci left: 1.134620e-03	ci right 1.247957e-03	k: 1714	n:1440000
KS ci ratio: 7.187965e-02	ci left: 1.987010e-03	ci right 2.135837e-03	k: 2967	n:1440000
ZNF567   1440000 perm   950 sec   (1515 perm/sec)   p_kst 2.060417e-03   p_cons 1.190278e-03   p_joint 1.041667e-05

Joint ci ratio: 9.799943e-01	ci left: 5.789933e-06	ci right 1.706216e-05	k: 15	n:1450000
Cons ci ratio: 9.429896e-02	ci left: 1.134202e-03	ci right 1.247116e-03	k: 1725	n:1450000
KS ci ratio: 7.165071e-02	ci left: 1.986175e-03	ci right 2.134446e-03	k: 2986	n:1450000
ZNF567   1450000 perm   962 sec   (1508 perm/sec)   p_kst 2.059310e-03   p_cons 1.189655e-03   p_joint 1.034483e-05

Joint ci ratio: 1.047659e+00	ci left: 4.741072e-06	ci right 1.522625e-05	k: 13	n:1460000
Cons ci ratio: 9.389175e-02	ci left: 1.136466e-03	ci right 1.249090e-03	k: 1740	n:1460000
KS ci ratio: 7.145969e-02	ci left: 1.983334e-03	ci right 2.130981e-03	k: 3002	n:1460000
ZNF567   1460000 perm   973 sec   (1500 perm/sec)   p_kst 2.056164e-03   p_cons 1.191781e-03   p_joint 8.904110e-06

Joint ci ratio: 1.047659e+00	ci left: 4.708819e-06	ci right 1.512267e-05	k: 13	n:1470000
Cons ci ratio: 9.362332e-02	ci left: 1.135378e-03	ci right 1.247555e-03	k: 1750	n:1470000
KS ci ratio: 7.121113e-02	ci left: 1.983873e-03	ci right 2.131025e-03	k: 3023	n:1470000
ZNF567   1470000 perm   985 sec   (1493 perm/sec)   p_kst 2.056463e-03   p_cons 1.190476e-03   p_joint 8.843537e-06

Joint ci ratio: 1.047659e+00	ci left: 4.677003e-06	ci right 1.502049e-05	k: 13	n:1480000
Cons ci ratio: 9.330415e-02	ci left: 1.135625e-03	ci right 1.247423e-03	k: 1762	n:1480000
KS ci ratio: 7.097682e-02	ci left: 1.983741e-03	ci right 2.130380e-03	k: 3043	n:1480000
ZNF567   1480000 perm   997 sec   (1485 perm/sec)   p_kst 2.056081e-03   p_cons 1.190541e-03   p_joint 8.783784e-06

Joint ci ratio: 9.799944e-01	ci left: 5.634498e-06	ci right 1.660412e-05	k: 15	n:1490000
Cons ci ratio: 9.293581e-02	ci left: 1.137181e-03	ci right 1.248665e-03	k: 1776	n:1490000
KS ci ratio: 7.071012e-02	ci left: 1.985591e-03	ci right 2.131792e-03	k: 3066	n:1490000
ZNF567   1490000 perm   1009 sec   (1477 perm/sec)   p_kst 2.057718e-03   p_cons 1.191946e-03   p_joint 1.006711e-05

Joint ci ratio: 9.799944e-01	ci left: 5.596935e-06	ci right 1.649343e-05	k: 15	n:1500000
Cons ci ratio: 9.264952e-02	ci left: 1.136763e-03	ci right 1.247844e-03	k: 1787	n:1500000
KS ci ratio: 7.045784e-02	ci left: 1.986761e-03	ci right 2.132505e-03	k: 3088	n:1500000
ZNF567   1500000 perm   1020 sec   (1470 perm/sec)   p_kst 2.058667e-03   p_cons 1.191333e-03   p_joint 1.000000e-05

Joint ci ratio: 9.799945e-01	ci left: 5.559869e-06	ci right 1.638420e-05	k: 15	n:1510000
Cons ci ratio: 9.244306e-02	ci left: 1.134410e-03	ci right 1.245001e-03	k: 1795	n:1510000
KS ci ratio: 7.027618e-02	ci left: 1.984013e-03	ci right 2.129165e-03	k: 3104	n:1510000
ZNF567   1510000 perm   1032 sec   (1463 perm/sec)   p_kst 2.055629e-03   p_cons 1.188742e-03   p_joint 9.933775e-06

Joint ci ratio: 9.799945e-01	ci left: 5.523291e-06	ci right 1.627641e-05	k: 15	n:1520000
Cons ci ratio: 9.221240e-02	ci left: 1.132731e-03	ci right 1.242868e-03	k: 1804	n:1520000
KS ci ratio: 6.997246e-02	ci left: 1.988412e-03	ci right 2.133232e-03	k: 3131	n:1520000
ZNF567   1520000 perm   1044 sec   (1456 perm/sec)   p_kst 2.059868e-03   p_cons 1.186842e-03   p_joint 9.868421e-06

Joint ci ratio: 9.799946e-01	ci left: 5.487191e-06	ci right 1.617003e-05	k: 15	n:1530000
Cons ci ratio: 9.203426e-02	ci left: 1.129797e-03	ci right 1.239426e-03	k: 1811	n:1530000
KS ci ratio: 6.966160e-02	ci left: 1.993398e-03	ci right 2.137909e-03	k: 3159	n:1530000
ZNF567   1530000 perm   1056 sec   (1449 perm/sec)   p_kst 2.064706e-03   p_cons 1.183660e-03   p_joint 9.803922e-06

Joint ci ratio: 9.799946e-01	ci left: 5.451559e-06	ci right 1.606503e-05	k: 15	n:1540000
Cons ci ratio: 9.178140e-02	ci left: 1.128805e-03	ci right 1.238020e-03	k: 1821	n:1540000
KS ci ratio: 6.940941e-02	ci left: 1.995129e-03	ci right 2.139221e-03	k: 3182	n:1540000
ZNF567   1540000 perm   1068 sec   (1442 perm/sec)   p_kst 2.066234e-03   p_cons 1.182468e-03   p_joint 9.740260e-06

Joint ci ratio: 9.799946e-01	ci left: 5.416388e-06	ci right 1.596138e-05	k: 15	n:1550000
Cons ci ratio: 9.153062e-02	ci left: 1.127826e-03	ci right 1.236632e-03	k: 1831	n:1550000
KS ci ratio: 6.926827e-02	ci left: 1.990499e-03	ci right 2.133953e-03	k: 3195	n:1550000
ZNF567   1550000 perm   1080 sec   (1435 perm/sec)   p_kst 2.061290e-03   p_cons 1.181290e-03   p_joint 9.677419e-06

Joint ci ratio: 9.799947e-01	ci left: 5.381667e-06	ci right 1.585907e-05	k: 15	n:1560000
Cons ci ratio: 9.123230e-02	ci left: 1.128113e-03	ci right 1.236573e-03	k: 1843	n:1560000
KS ci ratio: 6.904181e-02	ci left: 1.990968e-03	ci right 2.133968e-03	k: 3216	n:1560000
ZNF567   1560000 perm   1093 sec   (1428 perm/sec)   p_kst 2.061538e-03   p_cons 1.181410e-03   p_joint 9.615385e-06

Joint ci ratio: 9.799947e-01	ci left: 5.347389e-06	ci right 1.575805e-05	k: 15	n:1570000
Cons ci ratio: 9.101056e-02	ci left: 1.126529e-03	ci right 1.234560e-03	k: 1852	n:1570000
KS ci ratio: 6.878562e-02	ci left: 1.993310e-03	ci right 2.135926e-03	k: 3240	n:1570000
ZNF567   1570000 perm   1105 sec   (1421 perm/sec)   p_kst 2.063694e-03   p_cons 1.179618e-03   p_joint 9.554140e-06

Joint ci ratio: 9.799947e-01	ci left: 5.313545e-06	ci right 1.565832e-05	k: 15	n:1580000
Cons ci ratio: 9.086374e-02	ci left: 1.123110e-03	ci right 1.230630e-03	k: 1858	n:1580000
KS ci ratio: 6.857438e-02	ci left: 1.993135e-03	ci right 2.135283e-03	k: 3260	n:1580000
ZNF567   1580000 perm   1117 sec   (1414 perm/sec)   p_kst 2.063291e-03   p_cons 1.175949e-03   p_joint 9.493671e-06

Joint ci ratio: 9.799948e-01	ci left: 5.280126e-06	ci right 1.555984e-05	k: 15	n:1590000
Cons ci ratio: 9.049927e-02	ci left: 1.125267e-03	ci right 1.232538e-03	k: 1873	n:1590000
KS ci ratio: 6.828170e-02	ci left: 1.997908e-03	ci right 2.139764e-03	k: 3288	n:1590000
ZNF567   1590000 perm   1130 sec   (1407 perm/sec)   p_kst 2.067925e-03   p_cons 1.177987e-03   p_joint 9.433962e-06

Joint ci ratio: 9.799948e-01	ci left: 5.247126e-06	ci right 1.546259e-05	k: 15	n:1600000
Cons ci ratio: 9.021089e-02	ci left: 1.125564e-03	ci right 1.232504e-03	k: 1885	n:1600000
KS ci ratio: 6.809568e-02	ci left: 1.996479e-03	ci right 2.137833e-03	k: 3306	n:1600000
ZNF567   1600000 perm   1142 sec   (1401 perm/sec)   p_kst 2.066250e-03   p_cons 1.178125e-03   p_joint 9.375000e-06

Joint ci ratio: 9.799948e-01	ci left: 5.214535e-06	ci right 1.536655e-05	k: 15	n:1610000
Cons ci ratio: 8.987786e-02	ci left: 1.127073e-03	ci right 1.233740e-03	k: 1899	n:1610000
KS ci ratio: 6.786006e-02	ci left: 1.998122e-03	ci right 2.139083e-03	k: 3329	n:1610000
ZNF567   1610000 perm   1155 sec   (1394 perm/sec)   p_kst 2.067702e-03   p_cons 1.179503e-03   p_joint 9.316770e-06

Joint ci ratio: 9.799949e-01	ci left: 5.182346e-06	ci right 1.527169e-05	k: 15	n:1620000
Cons ci ratio: 8.961883e-02	ci left: 1.126754e-03	ci right 1.233067e-03	k: 1910	n:1620000
KS ci ratio: 6.766732e-02	ci left: 1.997317e-03	ci right 2.137806e-03	k: 3348	n:1620000
ZNF567   1620000 perm   1167 sec   (1388 perm/sec)   p_kst 2.066667e-03   p_cons 1.179012e-03   p_joint 9.259259e-06

Joint ci ratio: 9.799949e-01	ci left: 5.150552e-06	ci right 1.517800e-05	k: 15	n:1630000
Cons ci ratio: 8.936203e-02	ci left: 1.126438e-03	ci right 1.232402e-03	k: 1921	n:1630000
KS ci ratio: 6.740606e-02	ci left: 2.000746e-03	ci right 2.140910e-03	k: 3374	n:1630000
ZNF567   1630000 perm   1180 sec   (1381 perm/sec)   p_kst 2.069939e-03   p_cons 1.178528e-03   p_joint 9.202454e-06

Joint ci ratio: 9.799949e-01	ci left: 5.119147e-06	ci right 1.508545e-05	k: 15	n:1640000
Cons ci ratio: 8.913051e-02	ci left: 1.125531e-03	ci right 1.231121e-03	k: 1931	n:1640000
KS ci ratio: 6.718741e-02	ci left: 2.001735e-03	ci right 2.141496e-03	k: 3396	n:1640000
ZNF567   1640000 perm   1193 sec   (1375 perm/sec)   p_kst 2.070732e-03   p_cons 1.177439e-03   p_joint 9.146341e-06

Joint ci ratio: 9.239475e-01	ci left: 6.001906e-06	ci right 1.649610e-05	k: 17	n:1650000
Cons ci ratio: 8.380549e-02	ci left: 1.268735e-03	ci right 1.380300e-03	k: 2184	n:1650000
KS ci ratio: 6.698069e-02	ci left: 2.002117e-03	ci right 2.141458e-03	k: 3417	n:1650000
ZNF567   1650000 perm   1206 sec   (1368 perm/sec)   p_kst 2.070909e-03   p_cons 1.323636e-03   p_joint 1.030303e-05

Joint ci ratio: 9.239476e-01	ci left: 5.965750e-06	ci right 1.639672e-05	k: 17	n:1660000
Cons ci ratio: 8.357634e-02	ci left: 1.268169e-03	ci right 1.379365e-03	k: 2196	n:1660000
KS ci ratio: 6.680507e-02	ci left: 2.000718e-03	ci right 2.139583e-03	k: 3435	n:1660000
ZNF567   1660000 perm   1219 sec   (1362 perm/sec)   p_kst 2.069277e-03   p_cons 1.322892e-03   p_joint 1.024096e-05

Joint ci ratio: 9.239476e-01	ci left: 5.930027e-06	ci right 1.629854e-05	k: 17	n:1670000
Cons ci ratio: 8.329244e-02	ci left: 1.269370e-03	ci right 1.380275e-03	k: 2211	n:1670000
KS ci ratio: 6.666952e-02	ci left: 1.996981e-03	ci right 2.135294e-03	k: 3449	n:1670000
ZNF567   1670000 perm   1232 sec   (1355 perm/sec)   p_kst 2.065269e-03   p_cons 1.323952e-03   p_joint 1.017964e-05

Joint ci ratio: 9.239476e-01	ci left: 5.894729e-06	ci right 1.620153e-05	k: 17	n:1680000
Cons ci ratio: 8.312361e-02	ci left: 1.267060e-03	ci right 1.377528e-03	k: 2220	n:1680000
KS ci ratio: 6.650594e-02	ci left: 1.995045e-03	ci right 2.132871e-03	k: 3466	n:1680000
ZNF567   1680000 perm   1245 sec   (1349 perm/sec)   p_kst 2.063095e-03   p_cons 1.321429e-03   p_joint 1.011905e-05

Joint ci ratio: 9.239477e-01	ci left: 5.859849e-06	ci right 1.610566e-05	k: 17	n:1690000
Cons ci ratio: 8.289999e-02	ci left: 1.266516e-03	ci right 1.376625e-03	k: 2232	n:1690000
KS ci ratio: 6.626736e-02	ci left: 1.997787e-03	ci right 2.135289e-03	k: 3491	n:1690000
ZNF567   1690000 perm   1259 sec   (1343 perm/sec)   p_kst 2.065680e-03   p_cons 1.320710e-03   p_joint 1.005917e-05

Joint ci ratio: 8.993044e-01	ci left: 6.275271e-06	ci right 1.673393e-05	k: 18	n:1700000
Cons ci ratio: 8.260451e-02	ci left: 1.268283e-03	ci right 1.378133e-03	k: 2248	n:1700000
KS ci ratio: 6.605015e-02	ci left: 1.999341e-03	ci right 2.136482e-03	k: 3514	n:1700000
ZNF567   1700000 perm   1272 sec   (1337 perm/sec)   p_kst 2.067059e-03   p_cons 1.322353e-03   p_joint 1.058824e-05

Joint ci ratio: 9.239477e-01	ci left: 5.791312e-06	ci right 1.591729e-05	k: 17	n:1710000
Cons ci ratio: 8.234858e-02	ci left: 1.268884e-03	ci right 1.378430e-03	k: 2262	n:1710000
KS ci ratio: 6.586305e-02	ci left: 1.999152e-03	ci right 2.135877e-03	k: 3534	n:1710000
ZNF567   1710000 perm   1285 sec   (1330 perm/sec)   p_kst 2.066667e-03   p_cons 1.322807e-03   p_joint 9.941520e-06

Joint ci ratio: 1.047659e+00	ci left: 4.024397e-06	ci right 1.292461e-05	k: 13	n:1720000
Cons ci ratio: 8.213114e-02	ci left: 1.268340e-03	ci right 1.377536e-03	k: 2274	n:1720000
KS ci ratio: 6.565903e-02	ci left: 2.000109e-03	ci right 2.136460e-03	k: 3556	n:1720000
ZNF567   1720000 perm   1299 sec   (1324 perm/sec)   p_kst 2.067442e-03   p_cons 1.322093e-03   p_joint 7.558140e-06

Joint ci ratio: 1.047660e+00	ci left: 4.001134e-06	ci right 1.284991e-05	k: 13	n:1730000
Cons ci ratio: 8.189748e-02	ci left: 1.268369e-03	ci right 1.377242e-03	k: 2287	n:1730000
KS ci ratio: 6.551194e-02	ci left: 1.997645e-03	ci right 2.133510e-03	k: 3572	n:1730000
ZNF567   1730000 perm   1312 sec   (1318 perm/sec)   p_kst 2.064740e-03   p_cons 1.321965e-03   p_joint 7.514451e-06

Joint ci ratio: 1.047660e+00	ci left: 3.978139e-06	ci right 1.277606e-05	k: 13	n:1740000
Cons ci ratio: 8.164805e-02	ci left: 1.268961e-03	ci right 1.377537e-03	k: 2301	n:1740000
KS ci ratio: 6.540237e-02	ci left: 1.992948e-03	ci right 2.128259e-03	k: 3584	n:1740000
ZNF567   1740000 perm   1326 sec   (1312 perm/sec)   p_kst 2.059770e-03   p_cons 1.322414e-03   p_joint 7.471264e-06

Joint ci ratio: 1.047660e+00	ci left: 3.955407e-06	ci right 1.270305e-05	k: 13	n:1750000
Cons ci ratio: 8.145372e-02	ci left: 1.267867e-03	ci right 1.376080e-03	k: 2312	n:1750000
KS ci ratio: 6.522071e-02	ci left: 1.992801e-03	ci right 2.127712e-03	k: 3604	n:1750000
ZNF567   1750000 perm   1340 sec   (1306 perm/sec)   p_kst 2.059429e-03   p_cons 1.321143e-03   p_joint 7.428571e-06

Joint ci ratio: 1.047660e+00	ci left: 3.932933e-06	ci right 1.263087e-05	k: 13	n:1760000
Cons ci ratio: 8.134845e-02	ci left: 1.264003e-03	ci right 1.371739e-03	k: 2318	n:1760000
KS ci ratio: 6.504055e-02	ci left: 1.992657e-03	ci right 2.127172e-03	k: 3624	n:1760000
ZNF567   1760000 perm   1353 sec   (1300 perm/sec)   p_kst 2.059091e-03   p_cons 1.317045e-03   p_joint 7.386364e-06

Joint ci ratio: 1.047660e+00	ci left: 3.910713e-06	ci right 1.255951e-05	k: 13	n:1770000
Cons ci ratio: 8.106919e-02	ci left: 1.265718e-03	ci right 1.373213e-03	k: 2334	n:1770000
KS ci ratio: 6.487080e-02	ci left: 1.991959e-03	ci right 2.126063e-03	k: 3643	n:1770000
ZNF567   1770000 perm   1367 sec   (1295 perm/sec)   p_kst 2.058192e-03   p_cons 1.318644e-03   p_joint 7.344633e-06

Joint ci ratio: 1.047660e+00	ci left: 3.888743e-06	ci right 1.248895e-05	k: 13	n:1780000
Cons ci ratio: 8.075841e-02	ci left: 1.268515e-03	ci right 1.375815e-03	k: 2352	n:1780000
KS ci ratio: 6.464933e-02	ci left: 1.994586e-03	ci right 2.128391e-03	k: 3668	n:1780000
ZNF567   1780000 perm   1381 sec   (1289 perm/sec)   p_kst 2.060674e-03   p_cons 1.321348e-03   p_joint 7.303371e-06

Joint ci ratio: 1.047660e+00	ci left: 3.867018e-06	ci right 1.241918e-05	k: 13	n:1790000
Cons ci ratio: 8.055329e-02	ci left: 1.267997e-03	ci right 1.374968e-03	k: 2364	n:1790000
KS ci ratio: 6.450014e-02	ci left: 1.992787e-03	ci right 2.126151e-03	k: 3685	n:1790000
ZNF567   1790000 perm   1395 sec   (1283 perm/sec)   p_kst 2.058659e-03   p_cons 1.320670e-03   p_joint 7.262570e-06

Joint ci ratio: 1.047660e+00	ci left: 3.845535e-06	ci right 1.235019e-05	k: 13	n:1800000
Cons ci ratio: 8.028212e-02	ci left: 1.269663e-03	ci right 1.376397e-03	k: 2380	n:1800000
KS ci ratio: 6.431718e-02	ci left: 1.993195e-03	ci right 2.126193e-03	k: 3706	n:1800000
ZNF567   1800000 perm   1409 sec   (1277 perm/sec)   p_kst 2.058889e-03   p_cons 1.322222e-03   p_joint 7.222222e-06

Joint ci ratio: 1.047660e+00	ci left: 3.824289e-06	ci right 1.228196e-05	k: 13	n:1810000
Cons ci ratio: 8.004711e-02	ci left: 1.270228e-03	ci right 1.376682e-03	k: 2394	n:1810000
KS ci ratio: 6.413577e-02	ci left: 1.993598e-03	ci right 2.126235e-03	k: 3727	n:1810000
ZNF567   1810000 perm   1423 sec   (1272 perm/sec)   p_kst 2.059116e-03   p_cons 1.322652e-03   p_joint 7.182320e-06

Joint ci ratio: 1.047660e+00	ci left: 3.803276e-06	ci right 1.221447e-05	k: 13	n:1820000
Cons ci ratio: 7.983075e-02	ci left: 1.270249e-03	ci right 1.376403e-03	k: 2407	n:1820000
KS ci ratio: 6.397298e-02	ci left: 1.992917e-03	ci right 2.125159e-03	k: 3746	n:1820000
ZNF567   1820000 perm   1437 sec   (1266 perm/sec)   p_kst 2.058242e-03   p_cons 1.322527e-03   p_joint 7.142857e-06

Joint ci ratio: 9.239481e-01	ci left: 5.411554e-06	ci right 1.487354e-05	k: 17	n:1830000
Cons ci ratio: 7.964908e-02	ci left: 1.269198e-03	ci right 1.375013e-03	k: 2418	n:1830000
KS ci ratio: 6.380294e-02	ci left: 1.992781e-03	ci right 2.124650e-03	k: 3766	n:1830000
ZNF567   1830000 perm   1452 sec   (1261 perm/sec)   p_kst 2.057923e-03   p_cons 1.321311e-03   p_joint 9.289617e-06

Joint ci ratio: 1.012135e+00	ci left: 4.159751e-06	ci right 1.276607e-05	k: 14	n:1840000
Cons ci ratio: 7.935429e-02	ci left: 1.271889e-03	ci right 1.377517e-03	k: 2436	n:1840000
KS ci ratio: 6.365109e-02	ci left: 1.991577e-03	ci right 2.123041e-03	k: 3784	n:1840000
ZNF567   1840000 perm   1466 sec   (1255 perm/sec)   p_kst 2.056522e-03   p_cons 1.323913e-03   p_joint 7.608696e-06

Joint ci ratio: 1.012135e+00	ci left: 4.137266e-06	ci right 1.269706e-05	k: 14	n:1850000
Cons ci ratio: 7.922447e-02	ci left: 1.269252e-03	ci right 1.374481e-03	k: 2444	n:1850000
KS ci ratio: 6.347524e-02	ci left: 1.991983e-03	ci right 2.123097e-03	k: 3805	n:1850000
ZNF567   1850000 perm   1480 sec   (1250 perm/sec)   p_kst 2.056757e-03   p_cons 1.321081e-03   p_joint 7.567568e-06

Joint ci ratio: 1.012135e+00	ci left: 4.115022e-06	ci right 1.262880e-05	k: 14	n:1860000
Cons ci ratio: 7.893434e-02	ci left: 1.271914e-03	ci right 1.376960e-03	k: 2462	n:1860000
KS ci ratio: 6.335893e-02	ci left: 1.988681e-03	ci right 2.119329e-03	k: 3819	n:1860000
ZNF567   1860000 perm   1495 sec   (1244 perm/sec)   p_kst 2.053226e-03   p_cons 1.323656e-03   p_joint 7.526882e-06

Joint ci ratio: 1.047660e+00	ci left: 3.701584e-06	ci right 1.188788e-05	k: 13	n:1870000
Cons ci ratio: 7.871094e-02	ci left: 1.272452e-03	ci right 1.377231e-03	k: 2476	n:1870000
KS ci ratio: 6.321848e-02	ci left: 1.986993e-03	ci right 2.117230e-03	k: 3836	n:1870000
ZNF567   1870000 perm   1510 sec   (1239 perm/sec)   p_kst 2.051337e-03   p_cons 1.324064e-03   p_joint 6.951872e-06

Joint ci ratio: 1.047660e+00	ci left: 3.681895e-06	ci right 1.182465e-05	k: 13	n:1880000
Cons ci ratio: 7.850521e-02	ci left: 1.272462e-03	ci right 1.376956e-03	k: 2489	n:1880000
KS ci ratio: 6.306256e-02	ci left: 1.986371e-03	ci right 2.116234e-03	k: 3855	n:1880000
ZNF567   1880000 perm   1524 sec   (1233 perm/sec)   p_kst 2.050532e-03   p_cons 1.323936e-03   p_joint 6.914894e-06

Joint ci ratio: 1.047660e+00	ci left: 3.662414e-06	ci right 1.176209e-05	k: 13	n:1890000
Cons ci ratio: 7.836381e-02	ci left: 1.270398e-03	ci right 1.374526e-03	k: 2498	n:1890000
KS ci ratio: 6.290779e-02	ci left: 1.985756e-03	ci right 2.115249e-03	k: 3874	n:1890000
ZNF567   1890000 perm   1539 sec   (1228 perm/sec)   p_kst 2.049735e-03   p_cons 1.321693e-03   p_joint 6.878307e-06

Joint ci ratio: 1.047660e+00	ci left: 3.643138e-06	ci right 1.170018e-05	k: 13	n:1900000
Cons ci ratio: 7.802095e-02	ci left: 1.275065e-03	ci right 1.379097e-03	k: 2520	n:1900000
KS ci ratio: 6.268966e-02	ci left: 1.989292e-03	ci right 2.118549e-03	k: 3901	n:1900000
ZNF567   1900000 perm   1553 sec   (1223 perm/sec)   p_kst 2.053158e-03   p_cons 1.326316e-03   p_joint 6.842105e-06

Joint ci ratio: 1.047660e+00	ci left: 3.624064e-06	ci right 1.163892e-05	k: 13	n:1910000
Cons ci ratio: 7.780519e-02	ci left: 1.275576e-03	ci right 1.379349e-03	k: 2534	n:1910000
KS ci ratio: 6.252164e-02	ci left: 1.989699e-03	ci right 2.118624e-03	k: 3922	n:1910000
ZNF567   1910000 perm   1568 sec   (1218 perm/sec)   p_kst 2.053403e-03   p_cons 1.326702e-03   p_joint 6.806283e-06

Joint ci ratio: 1.047660e+00	ci left: 3.605188e-06	ci right 1.157830e-05	k: 13	n:1920000
Cons ci ratio: 7.762171e-02	ci left: 1.275061e-03	ci right 1.378536e-03	k: 2546	n:1920000
KS ci ratio: 6.227589e-02	ci left: 1.995230e-03	ci right 2.123987e-03	k: 3953	n:1920000
ZNF567   1920000 perm   1583 sec   (1213 perm/sec)   p_kst 2.058854e-03   p_cons 1.326042e-03   p_joint 6.770833e-06

Joint ci ratio: 1.047660e+00	ci left: 3.586509e-06	ci right 1.151831e-05	k: 13	n:1930000
Cons ci ratio: 7.746985e-02	ci left: 1.273535e-03	ci right 1.376675e-03	k: 2556	n:1930000
KS ci ratio: 6.213467e-02	ci left: 1.994074e-03	ci right 2.122454e-03	k: 3971	n:1930000
ZNF567   1930000 perm   1598 sec   (1207 perm/sec)   p_kst 2.057513e-03   p_cons 1.324352e-03   p_joint 6.735751e-06

Joint ci ratio: 1.047660e+00	ci left: 3.568021e-06	ci right 1.145894e-05	k: 13	n:1940000
Cons ci ratio: 7.733396e-02	ci left: 1.271520e-03	ci right 1.374308e-03	k: 2565	n:1940000
KS ci ratio: 6.200997e-02	ci left: 1.991914e-03	ci right 2.119889e-03	k: 3987	n:1940000
ZNF567   1940000 perm   1613 sec   (1203 perm/sec)   p_kst 2.055155e-03   p_cons 1.322165e-03   p_joint 6.701031e-06

Joint ci ratio: 1.047660e+00	ci left: 3.549724e-06	ci right 1.140018e-05	k: 13	n:1950000
Cons ci ratio: 7.716877e-02	ci left: 1.270531e-03	ci right 1.373010e-03	k: 2576	n:1950000
KS ci ratio: 6.183961e-02	ci left: 1.992807e-03	ci right 2.120474e-03	k: 4009	n:1950000
ZNF567   1950000 perm   1628 sec   (1198 perm/sec)   p_kst 2.055897e-03   p_cons 1.321026e-03   p_joint 6.666667e-06

Joint ci ratio: 1.047660e+00	ci left: 3.531613e-06	ci right 1.134201e-05	k: 13	n:1960000
Cons ci ratio: 7.694512e-02	ci left: 1.271555e-03	ci right 1.373806e-03	k: 2591	n:1960000
KS ci ratio: 6.168598e-02	ci left: 1.992686e-03	ci right 2.120017e-03	k: 4029	n:1960000
ZNF567   1960000 perm   1643 sec   (1193 perm/sec)   p_kst 2.055612e-03   p_cons 1.321939e-03   p_joint 6.632653e-06

Joint ci ratio: 1.047660e+00	ci left: 3.513686e-06	ci right 1.128444e-05	k: 13	n:1970000
Cons ci ratio: 7.670868e-02	ci left: 1.273066e-03	ci right 1.375110e-03	k: 2607	n:1970000
KS ci ratio: 6.153349e-02	ci left: 1.992567e-03	ci right 2.119564e-03	k: 4049	n:1970000
ZNF567   1970000 perm   1659 sec   (1188 perm/sec)   p_kst 2.055330e-03   p_cons 1.323350e-03   p_joint 6.598985e-06

Joint ci ratio: 1.047660e+00	ci left: 3.495940e-06	ci right 1.122745e-05	k: 13	n:1980000
Cons ci ratio: 7.643066e-02	ci left: 1.276048e-03	ci right 1.377944e-03	k: 2626	n:1980000
KS ci ratio: 6.143509e-02	ci left: 1.988968e-03	ci right 2.115526e-03	k: 4062	n:1980000
ZNF567   1980000 perm   1674 sec   (1183 perm/sec)   p_kst 2.051515e-03   p_cons 1.326263e-03   p_joint 6.565657e-06

Joint ci ratio: 1.047660e+00	ci left: 3.478373e-06	ci right 1.117103e-05	k: 13	n:1990000
Cons ci ratio: 7.624225e-02	ci left: 1.276044e-03	ci right 1.377677e-03	k: 2639	n:1990000
KS ci ratio: 6.127693e-02	ci left: 1.989364e-03	ci right 2.115610e-03	k: 4083	n:1990000
ZNF567   1990000 perm   1689 sec   (1178 perm/sec)   p_kst 2.051759e-03   p_cons 1.326131e-03   p_joint 6.532663e-06

Joint ci ratio: 1.047660e+00	ci left: 3.460981e-06	ci right 1.111517e-05	k: 13	n:2000000
Cons ci ratio: 7.608395e-02	ci left: 1.275059e-03	ci right 1.376394e-03	k: 2650	n:2000000
KS ci ratio: 6.109017e-02	ci left: 1.991726e-03	ci right 2.117723e-03	k: 4108	n:2000000
ZNF567   2000000 perm   1705 sec   (1173 perm/sec)   p_kst 2.054000e-03   p_cons 1.325000e-03   p_joint 6.500000e-06

Joint ci ratio: 1.047660e+00	ci left: 3.443762e-06	ci right 1.105987e-05	k: 13	n:2010000
Cons ci ratio: 7.584110e-02	ci left: 1.277013e-03	ci right 1.378164e-03	k: 2667	n:2010000
KS ci ratio: 6.095684e-02	ci left: 1.990635e-03	ci right 2.116279e-03	k: 4126	n:2010000
ZNF567   2010000 perm   1720 sec   (1168 perm/sec)   p_kst 2.052736e-03   p_cons 1.326866e-03   p_joint 6.467662e-06

Joint ci ratio: 1.047660e+00	ci left: 3.426713e-06	ci right 1.100512e-05	k: 13	n:2020000
Cons ci ratio: 7.560056e-02	ci left: 1.278947e-03	ci right 1.379917e-03	k: 2684	n:2020000
KS ci ratio: 6.075099e-02	ci left: 1.994431e-03	ci right 2.119874e-03	k: 4154	n:2020000
ZNF567   2020000 perm   1736 sec   (1164 perm/sec)   p_kst 2.056436e-03   p_cons 1.328713e-03   p_joint 6.435644e-06

Joint ci ratio: 1.047660e+00	ci left: 3.409833e-06	ci right 1.095091e-05	k: 13	n:2030000
Cons ci ratio: 7.534833e-02	ci left: 1.281347e-03	ci right 1.382153e-03	k: 2702	n:2030000
KS ci ratio: 6.062714e-02	ci left: 1.992854e-03	ci right 2.117933e-03	k: 4171	n:2030000
ZNF567   2030000 perm   1752 sec   (1159 perm/sec)   p_kst 2.054680e-03   p_cons 1.331034e-03   p_joint 6.403941e-06

Joint ci ratio: 1.047660e+00	ci left: 3.393118e-06	ci right 1.089723e-05	k: 13	n:2040000
Cons ci ratio: 7.511243e-02	ci left: 1.283242e-03	ci right 1.383868e-03	k: 2719	n:2040000
KS ci ratio: 6.052577e-02	ci left: 1.989844e-03	ci right 2.114518e-03	k: 4185	n:2040000
ZNF567   2040000 perm   1767 sec   (1154 perm/sec)   p_kst 2.051471e-03   p_cons 1.332843e-03   p_joint 6.372549e-06

Joint ci ratio: 1.047660e+00	ci left: 3.376566e-06	ci right 1.084407e-05	k: 13	n:2050000
Cons ci ratio: 7.496105e-02	ci left: 1.282248e-03	ci right 1.382584e-03	k: 2730	n:2050000
KS ci ratio: 6.043211e-02	ci left: 1.986382e-03	ci right 2.110641e-03	k: 4198	n:2050000
ZNF567   2050000 perm   1783 sec   (1150 perm/sec)   p_kst 2.047805e-03   p_cons 1.331707e-03   p_joint 6.341463e-06

Joint ci ratio: 1.047660e+00	ci left: 3.360175e-06	ci right 1.079143e-05	k: 13	n:2060000
Cons ci ratio: 7.486528e-02	ci left: 1.279358e-03	ci right 1.379334e-03	k: 2737	n:2060000
KS ci ratio: 6.031020e-02	ci left: 1.984868e-03	ci right 2.108772e-03	k: 4215	n:2060000
ZNF567   2060000 perm   1799 sec   (1145 perm/sec)   p_kst 2.046117e-03   p_cons 1.328641e-03   p_joint 6.310680e-06

Joint ci ratio: 1.047660e+00	ci left: 3.343943e-06	ci right 1.073930e-05	k: 13	n:2070000
Cons ci ratio: 7.472899e-02	ci left: 1.277918e-03	ci right 1.377592e-03	k: 2747	n:2070000
KS ci ratio: 6.011081e-02	ci left: 1.988602e-03	ci right 2.112315e-03	k: 4243	n:2070000
ZNF567   2070000 perm   1815 sec   (1140 perm/sec)   p_kst 2.049758e-03   p_cons 1.327053e-03   p_joint 6.280193e-06

Joint ci ratio: 1.012136e+00	ci left: 3.679779e-06	ci right 1.129306e-05	k: 14	n:2080000
Cons ci ratio: 7.462055e-02	ci left: 1.275548e-03	ci right 1.374887e-03	k: 2755	n:2080000
KS ci ratio: 5.995560e-02	ci left: 1.989460e-03	ci right 2.112895e-03	k: 4265	n:2080000
ZNF567   2080000 perm   1831 sec   (1136 perm/sec)   p_kst 2.050481e-03   p_cons 1.324519e-03   p_joint 6.730769e-06

Joint ci ratio: 1.012136e+00	ci left: 3.662172e-06	ci right 1.123903e-05	k: 14	n:2090000
Cons ci ratio: 7.456662e-02	ci left: 1.271323e-03	ci right 1.370258e-03	k: 2759	n:2090000
KS ci ratio: 5.983654e-02	ci left: 1.987953e-03	ci right 2.111041e-03	k: 4282	n:2090000
ZNF567   2090000 perm   1847 sec   (1131 perm/sec)   p_kst 2.048804e-03   p_cons 1.320096e-03   p_joint 6.698565e-06

Joint ci ratio: 1.012136e+00	ci left: 3.644733e-06	ci right 1.118551e-05	k: 14	n:2100000
Cons ci ratio: 7.440507e-02	ci left: 1.270877e-03	ci right 1.369554e-03	k: 2771	n:2100000
KS ci ratio: 5.975998e-02	ci left: 1.983646e-03	ci right 2.106305e-03	k: 4293	n:2100000
ZNF567   2100000 perm   1863 sec   (1127 perm/sec)   p_kst 2.044286e-03   p_cons 1.319524e-03   p_joint 6.666667e-06

Joint ci ratio: 1.012136e+00	ci left: 3.627460e-06	ci right 1.113250e-05	k: 14	n:2110000
Cons ci ratio: 7.423121e-02	ci left: 1.270901e-03	ci right 1.369339e-03	k: 2784	n:2110000
KS ci ratio: 5.963516e-02	ci left: 1.982648e-03	ci right 2.104981e-03	k: 4311	n:2110000
ZNF567   2110000 perm   1879 sec   (1123 perm/sec)   p_kst 2.043128e-03   p_cons 1.319431e-03   p_joint 6.635071e-06

Joint ci ratio: 1.012136e+00	ci left: 3.610349e-06	ci right 1.107999e-05	k: 14	n:2120000
Cons ci ratio: 7.403208e-02	ci left: 1.271850e-03	ci right 1.370086e-03	k: 2799	n:2120000
KS ci ratio: 5.946297e-02	ci left: 1.984913e-03	ci right 2.107020e-03	k: 4336	n:2120000
ZNF567   2120000 perm   1896 sec   (1118 perm/sec)   p_kst 2.045283e-03   p_cons 1.320283e-03   p_joint 6.603774e-06

Joint ci ratio: 1.012136e+00	ci left: 3.593399e-06	ci right 1.102797e-05	k: 14	n:2130000
Cons ci ratio: 7.390029e-02	ci left: 1.270487e-03	ci right 1.368436e-03	k: 2809	n:2130000
KS ci ratio: 5.929226e-02	ci left: 1.987157e-03	ci right 2.109039e-03	k: 4361	n:2130000
ZNF567   2130000 perm   1912 sec   (1114 perm/sec)   p_kst 2.047418e-03   p_cons 1.318779e-03   p_joint 6.572770e-06

Joint ci ratio: 9.799961e-01	ci left: 3.923083e-06	ci right 1.156082e-05	k: 15	n:2140000
Cons ci ratio: 7.375611e-02	ci left: 1.269595e-03	ci right 1.367276e-03	k: 2820	n:2140000
KS ci ratio: 5.921099e-02	ci left: 1.983396e-03	ci right 2.104874e-03	k: 4373	n:2140000
ZNF567   2140000 perm   1929 sec   (1109 perm/sec)   p_kst 2.043458e-03   p_cons 1.317757e-03   p_joint 7.009346e-06

Joint ci ratio: 9.799961e-01	ci left: 3.904836e-06	ci right 1.150705e-05	k: 15	n:2150000
Cons ci ratio: 7.354778e-02	ci left: 1.270995e-03	ci right 1.368496e-03	k: 2836	n:2150000
KS ci ratio: 5.906935e-02	ci left: 1.983794e-03	ci right 2.104996e-03	k: 4394	n:2150000
ZNF567   2150000 perm   1945 sec   (1105 perm/sec)   p_kst 2.043721e-03   p_cons 1.319070e-03   p_joint 6.976744e-06

Joint ci ratio: 9.799961e-01	ci left: 3.886758e-06	ci right 1.145378e-05	k: 15	n:2160000
Cons ci ratio: 7.340565e-02	ci left: 1.270110e-03	ci right 1.367346e-03	k: 2847	n:2160000
KS ci ratio: 5.893541e-02	ci left: 1.983732e-03	ci right 2.104646e-03	k: 4414	n:2160000
ZNF567   2160000 perm   1962 sec   (1101 perm/sec)   p_kst 2.043519e-03   p_cons 1.318056e-03   p_joint 6.944444e-06

Joint ci ratio: 9.799962e-01	ci left: 3.868847e-06	ci right 1.140100e-05	k: 15	n:2170000
Cons ci ratio: 7.325151e-02	ci left: 1.269685e-03	ci right 1.366676e-03	k: 2859	n:2170000
KS ci ratio: 5.880902e-02	ci left: 1.983217e-03	ci right 2.103832e-03	k: 4433	n:2170000
ZNF567   2170000 perm   1978 sec   (1097 perm/sec)   p_kst 2.042857e-03   p_cons 1.317512e-03   p_joint 6.912442e-06

Joint ci ratio: 9.799962e-01	ci left: 3.851100e-06	ci right 1.134870e-05	k: 15	n:2180000
Cons ci ratio: 7.306014e-02	ci left: 1.270616e-03	ci right 1.367414e-03	k: 2874	n:2180000
KS ci ratio: 5.867684e-02	ci left: 1.983159e-03	ci right 2.103491e-03	k: 4453	n:2180000
ZNF567   2180000 perm   1995 sec   (1093 perm/sec)   p_kst 2.042661e-03   p_cons 1.318349e-03   p_joint 6.880734e-06

Joint ci ratio: 9.799962e-01	ci left: 3.833515e-06	ci right 1.129688e-05	k: 15	n:2190000
Cons ci ratio: 7.288288e-02	ci left: 1.271090e-03	ci right 1.367679e-03	k: 2888	n:2190000
KS ci ratio: 5.849317e-02	ci left: 1.986702e-03	ci right 2.106858e-03	k: 4481	n:2190000
ZNF567   2190000 perm   2012 sec   (1089 perm/sec)   p_kst 2.046119e-03   p_cons 1.318721e-03   p_joint 6.849315e-06

Joint ci ratio: 9.799962e-01	ci left: 3.816089e-06	ci right 1.124553e-05	k: 15	n:2200000
Cons ci ratio: 7.276969e-02	ci left: 1.269329e-03	ci right 1.365628e-03	k: 2897	n:2200000
KS ci ratio: 5.836311e-02	ci left: 1.986630e-03	ci right 2.106505e-03	k: 4501	n:2200000
ZNF567   2200000 perm   2028 sec   (1085 perm/sec)   p_kst 2.045909e-03   p_cons 1.316818e-03   p_joint 6.818182e-06

Joint ci ratio: 9.799962e-01	ci left: 3.798822e-06	ci right 1.119464e-05	k: 15	n:2210000
Cons ci ratio: 7.253222e-02	ci left: 1.272026e-03	ci right 1.368202e-03	k: 2916	n:2210000
KS ci ratio: 5.823391e-02	ci left: 1.986558e-03	ci right 2.106155e-03	k: 4521	n:2210000
ZNF567   2210000 perm   2045 sec   (1080 perm/sec)   p_kst 2.045701e-03   p_cons 1.319457e-03   p_joint 6.787330e-06

Joint ci ratio: 9.799962e-01	ci left: 3.781710e-06	ci right 1.114422e-05	k: 15	n:2220000
Cons ci ratio: 7.232172e-02	ci left: 1.273816e-03	ci right 1.369835e-03	k: 2933	n:2220000
KS ci ratio: 5.803518e-02	ci left: 1.991371e-03	ci right 2.110835e-03	k: 4552	n:2220000
ZNF567   2220000 perm   2063 sec   (1076 perm/sec)   p_kst 2.050450e-03   p_cons 1.321171e-03   p_joint 6.756757e-06

Joint ci ratio: 9.799963e-01	ci left: 3.764752e-06	ci right 1.109424e-05	k: 15	n:2230000
Cons ci ratio: 7.218656e-02	ci left: 1.272947e-03	ci right 1.368714e-03	k: 2944	n:2230000
KS ci ratio: 5.793989e-02	ci left: 1.989070e-03	ci right 2.108193e-03	k: 4567	n:2230000
ZNF567   2230000 perm   2080 sec   (1072 perm/sec)   p_kst 2.047982e-03   p_cons 1.320179e-03   p_joint 6.726457e-06

Joint ci ratio: 9.799963e-01	ci left: 3.747945e-06	ci right 1.104472e-05	k: 15	n:2240000
Cons ci ratio: 7.202777e-02	ci left: 1.272963e-03	ci right 1.368512e-03	k: 2957	n:2240000
KS ci ratio: 5.782610e-02	ci left: 1.988110e-03	ci right 2.106934e-03	k: 4585	n:2240000
ZNF567   2240000 perm   2097 sec   (1068 perm/sec)   p_kst 2.046875e-03   p_cons 1.320089e-03   p_joint 6.696429e-06

Joint ci ratio: 9.799963e-01	ci left: 3.731287e-06	ci right 1.099563e-05	k: 15	n:2250000
Cons ci ratio: 7.187001e-02	ci left: 1.272979e-03	ci right 1.368312e-03	k: 2970	n:2250000
KS ci ratio: 5.768788e-02	ci left: 1.988910e-03	ci right 2.107488e-03	k: 4607	n:2250000
ZNF567   2250000 perm   2114 sec   (1064 perm/sec)   p_kst 2.047556e-03   p_cons 1.320000e-03   p_joint 6.666667e-06

Joint ci ratio: 9.799963e-01	ci left: 3.714777e-06	ci right 1.094698e-05	k: 15	n:2260000
Cons ci ratio: 7.173737e-02	ci left: 1.272127e-03	ci right 1.367212e-03	k: 2981	n:2260000
KS ci ratio: 5.759428e-02	ci left: 1.986651e-03	ci right 2.104896e-03	k: 4622	n:2260000
ZNF567   2260000 perm   2131 sec   (1060 perm/sec)   p_kst 2.045133e-03   p_cons 1.319027e-03   p_joint 6.637168e-06

Joint ci ratio: 9.799963e-01	ci left: 3.698413e-06	ci right 1.089875e-05	k: 15	n:2270000
Cons ci ratio: 7.158151e-02	ci left: 1.272147e-03	ci right 1.367018e-03	k: 2994	n:2270000
KS ci ratio: 5.744532e-02	ci left: 1.988320e-03	ci right 2.106348e-03	k: 4646	n:2270000
ZNF567   2270000 perm   2149 sec   (1057 perm/sec)   p_kst 2.046696e-03   p_cons 1.318943e-03   p_joint 6.607930e-06

Joint ci ratio: 9.507359e-01	ci left: 4.011138e-06	ci right 1.139603e-05	k: 16	n:2280000
Cons ci ratio: 7.141478e-02	ci left: 1.272598e-03	ci right 1.367273e-03	k: 3008	n:2280000
KS ci ratio: 5.730365e-02	ci left: 1.989542e-03	ci right 2.107342e-03	k: 4669	n:2280000
ZNF567   2280000 perm   2166 sec   (1053 perm/sec)   p_kst 2.047807e-03   p_cons 1.319298e-03   p_joint 7.017544e-06

Joint ci ratio: 9.507359e-01	ci left: 3.993622e-06	ci right 1.134626e-05	k: 16	n:2290000
Cons ci ratio: 7.128464e-02	ci left: 1.271758e-03	ci right 1.366191e-03	k: 3019	n:2290000
KS ci ratio: 5.715083e-02	ci left: 1.991615e-03	ci right 2.109213e-03	k: 4694	n:2290000
ZNF567   2290000 perm   2183 sec   (1049 perm/sec)   p_kst 2.049782e-03   p_cons 1.318341e-03   p_joint 6.986900e-06

Joint ci ratio: 9.507359e-01	ci left: 3.976258e-06	ci right 1.129693e-05	k: 16	n:2300000
Cons ci ratio: 7.110823e-02	ci left: 1.272635e-03	ci right 1.366889e-03	k: 3034	n:2300000
KS ci ratio: 5.706589e-02	ci left: 1.988956e-03	ci right 2.106216e-03	k: 4708	n:2300000
ZNF567   2300000 perm   2201 sec   (1045 perm/sec)   p_kst 2.046957e-03   p_cons 1.319130e-03   p_joint 6.956522e-06

Joint ci ratio: 9.507359e-01	ci left: 3.959045e-06	ci right 1.124803e-05	k: 16	n:2310000
Cons ci ratio: 7.097976e-02	ci left: 1.271803e-03	ci right 1.365818e-03	k: 3045	n:2310000
KS ci ratio: 5.695716e-02	ci left: 1.988027e-03	ci right 2.105002e-03	k: 4726	n:2310000
ZNF567   2310000 perm   2218 sec   (1042 perm/sec)   p_kst 2.045887e-03   p_cons 1.318182e-03   p_joint 6.926407e-06

Joint ci ratio: 9.507360e-01	ci left: 3.941980e-06	ci right 1.119954e-05	k: 16	n:2320000
Cons ci ratio: 7.081719e-02	ci left: 1.272248e-03	ci right 1.366073e-03	k: 3059	n:2320000
KS ci ratio: 5.686708e-02	ci left: 1.985831e-03	ci right 2.102486e-03	k: 4741	n:2320000
ZNF567   2320000 perm   2236 sec   (1038 perm/sec)   p_kst 2.043534e-03   p_cons 1.318534e-03   p_joint 6.896552e-06

Joint ci ratio: 9.507360e-01	ci left: 3.925062e-06	ci right 1.115148e-05	k: 16	n:2330000
Cons ci ratio: 7.057531e-02	ci left: 1.275642e-03	ci right 1.369382e-03	k: 3080	n:2330000
KS ci ratio: 5.673560e-02	ci left: 1.986616e-03	ci right 2.103039e-03	k: 4763	n:2330000
ZNF567   2330000 perm   2253 sec   (1034 perm/sec)   p_kst 2.044206e-03   p_cons 1.321888e-03   p_joint 6.866953e-06

Joint ci ratio: 9.507360e-01	ci left: 3.908288e-06	ci right 1.110382e-05	k: 16	n:2340000
Cons ci ratio: 7.039273e-02	ci left: 1.276907e-03	ci right 1.370488e-03	k: 3096	n:2340000
KS ci ratio: 5.656951e-02	ci left: 1.989923e-03	ci right 2.106187e-03	k: 4791	n:2340000
ZNF567   2340000 perm   2271 sec   (1030 perm/sec)   p_kst 2.047436e-03   p_cons 1.323077e-03   p_joint 6.837607e-06

Joint ci ratio: 9.507360e-01	ci left: 3.891657e-06	ci right 1.105657e-05	k: 16	n:2350000
Cons ci ratio: 7.024545e-02	ci left: 1.276908e-03	ci right 1.370285e-03	k: 3109	n:2350000
KS ci ratio: 5.643421e-02	ci left: 1.991104e-03	ci right 2.107150e-03	k: 4814	n:2350000
ZNF567   2350000 perm   2289 sec   (1027 perm/sec)   p_kst 2.048511e-03   p_cons 1.322979e-03   p_joint 6.808511e-06

Joint ci ratio: 9.507360e-01	ci left: 3.875167e-06	ci right 1.100972e-05	k: 16	n:2360000
Cons ci ratio: 7.011034e-02	ci left: 1.276493e-03	ci right 1.369653e-03	k: 3121	n:2360000
KS ci ratio: 5.631738e-02	ci left: 1.991022e-03	ci right 2.106815e-03	k: 4834	n:2360000
ZNF567   2360000 perm   2307 sec   (1023 perm/sec)   p_kst 2.048305e-03   p_cons 1.322458e-03   p_joint 6.779661e-06

Joint ci ratio: 9.507360e-01	ci left: 3.858816e-06	ci right 1.096327e-05	k: 16	n:2370000
Cons ci ratio: 6.995366e-02	ci left: 1.276911e-03	ci right 1.369884e-03	k: 3135	n:2370000
KS ci ratio: 5.622448e-02	ci left: 1.989278e-03	ci right 2.104772e-03	k: 4850	n:2370000
ZNF567   2370000 perm   2325 sec   (1019 perm/sec)   p_kst 2.046414e-03   p_cons 1.322785e-03   p_joint 6.751055e-06

Joint ci ratio: 9.507361e-01	ci left: 3.842602e-06	ci right 1.091720e-05	k: 16	n:2380000
Cons ci ratio: 6.974262e-02	ci left: 1.279389e-03	ci right 1.372251e-03	k: 3154	n:2380000
KS ci ratio: 5.607434e-02	ci left: 1.991690e-03	ci right 2.107006e-03	k: 4876	n:2380000
ZNF567   2380000 perm   2343 sec   (1016 perm/sec)   p_kst 2.048739e-03   p_cons 1.325210e-03   p_joint 6.722689e-06

Joint ci ratio: 9.507361e-01	ci left: 3.826525e-06	ci right 1.087152e-05	k: 16	n:2390000
Cons ci ratio: 6.967650e-02	ci left: 1.276503e-03	ci right 1.369064e-03	k: 3160	n:2390000
KS ci ratio: 5.594827e-02	ci left: 1.992433e-03	ci right 2.107524e-03	k: 4898	n:2390000
ZNF567   2390000 perm   2361 sec   (1012 perm/sec)   p_kst 2.049372e-03   p_cons 1.322176e-03   p_joint 6.694561e-06

Joint ci ratio: 9.239492e-01	ci left: 4.126308e-06	ci right 1.134108e-05	k: 17	n:2400000
Cons ci ratio: 6.954464e-02	ci left: 1.276097e-03	ci right 1.368446e-03	k: 3172	n:2400000
KS ci ratio: 5.580033e-02	ci left: 1.994813e-03	ci right 2.109727e-03	k: 4924	n:2400000
ZNF567   2400000 perm   2379 sec   (1009 perm/sec)   p_kst 2.051667e-03   p_cons 1.321667e-03   p_joint 7.083333e-06

Joint ci ratio: 9.239492e-01	ci left: 4.109186e-06	ci right 1.129402e-05	k: 17	n:2410000
Cons ci ratio: 6.936992e-02	ci left: 1.277326e-03	ci right 1.369522e-03	k: 3188	n:2410000
KS ci ratio: 5.567610e-02	ci left: 1.995537e-03	ci right 2.110229e-03	k: 4946	n:2410000
ZNF567   2410000 perm   2397 sec   (1005 perm/sec)   p_kst 2.052282e-03   p_cons 1.322822e-03   p_joint 7.053942e-06

Joint ci ratio: 9.239492e-01	ci left: 4.092206e-06	ci right 1.124735e-05	k: 17	n:2420000
Cons ci ratio: 6.928315e-02	ci left: 1.275296e-03	ci right 1.367226e-03	k: 3196	n:2420000
KS ci ratio: 5.560880e-02	ci left: 1.992181e-03	ci right 2.106536e-03	k: 4958	n:2420000
ZNF567   2420000 perm   2416 sec   (1002 perm/sec)   p_kst 2.048760e-03   p_cons 1.320661e-03   p_joint 7.024793e-06

Joint ci ratio: 9.239492e-01	ci left: 4.075366e-06	ci right 1.120107e-05	k: 17	n:2430000
Cons ci ratio: 6.912116e-02	ci left: 1.276114e-03	ci right 1.367879e-03	k: 3211	n:2430000
KS ci ratio: 5.548026e-02	ci left: 1.993316e-03	ci right 2.107464e-03	k: 4981	n:2430000
ZNF567   2430000 perm   2434 sec   (998 perm/sec)   p_kst 2.049794e-03   p_cons 1.321399e-03   p_joint 6.995885e-06

Joint ci ratio: 8.993060e-01	ci left: 4.372113e-06	ci right 1.165889e-05	k: 18	n:2440000
Cons ci ratio: 6.894960e-02	ci left: 1.277328e-03	ci right 1.368944e-03	k: 3227	n:2440000
KS ci ratio: 5.539143e-02	ci left: 1.991613e-03	ci right 2.105475e-03	k: 4997	n:2440000
ZNF567   2440000 perm   2452 sec   (995 perm/sec)   p_kst 2.047951e-03   p_cons 1.322541e-03   p_joint 7.377049e-06

Joint ci ratio: 8.993060e-01	ci left: 4.354267e-06	ci right 1.161131e-05	k: 18	n:2450000
Cons ci ratio: 6.876870e-02	ci left: 1.278934e-03	ci right 1.370414e-03	k: 3244	n:2450000
KS ci ratio: 5.529199e-02	ci left: 1.990730e-03	ci right 2.104330e-03	k: 5015	n:2450000
ZNF567   2450000 perm   2471 sec   (992 perm/sec)   p_kst 2.046939e-03   p_cons 1.324082e-03   p_joint 7.346939e-06

Joint ci ratio: 8.993060e-01	ci left: 4.336567e-06	ci right 1.156411e-05	k: 18	n:2460000
Cons ci ratio: 6.865247e-02	ci left: 1.278130e-03	ci right 1.369392e-03	k: 3255	n:2460000
KS ci ratio: 5.523707e-02	ci left: 1.986646e-03	ci right 2.099897e-03	k: 5025	n:2460000
ZNF567   2460000 perm   2489 sec   (988 perm/sec)   p_kst 2.042683e-03   p_cons 1.323171e-03   p_joint 7.317073e-06

Joint ci ratio: 8.993060e-01	ci left: 4.319010e-06	ci right 1.151729e-05	k: 18	n:2470000
Cons ci ratio: 6.847390e-02	ci left: 1.279720e-03	ci right 1.370848e-03	k: 3272	n:2470000
KS ci ratio: 5.513845e-02	ci left: 1.985790e-03	ci right 2.098784e-03	k: 5043	n:2470000
ZNF567   2470000 perm   2508 sec   (985 perm/sec)   p_kst 2.041700e-03   p_cons 1.324696e-03   p_joint 7.287449e-06

Joint ci ratio: 8.993061e-01	ci left: 4.301595e-06	ci right 1.147085e-05	k: 18	n:2480000
Cons ci ratio: 6.832791e-02	ci left: 1.280108e-03	ci right 1.371063e-03	k: 3286	n:2480000
KS ci ratio: 5.504036e-02	ci left: 1.984941e-03	ci right 2.097679e-03	k: 5061	n:2480000
ZNF567   2480000 perm   2527 sec   (982 perm/sec)   p_kst 2.040726e-03   p_cons 1.325000e-03   p_joint 7.258065e-06

Joint ci ratio: 8.993061e-01	ci left: 4.284319e-06	ci right 1.142478e-05	k: 18	n:2490000
Cons ci ratio: 6.819319e-02	ci left: 1.280099e-03	ci right 1.370866e-03	k: 3299	n:2490000
KS ci ratio: 5.497532e-02	ci left: 1.981722e-03	ci right 2.094140e-03	k: 5073	n:2490000
ZNF567   2490000 perm   2546 sec   (978 perm/sec)   p_kst 2.037349e-03   p_cons 1.324900e-03   p_joint 7.228916e-06

Joint ci ratio: 8.993061e-01	ci left: 4.267182e-06	ci right 1.137908e-05	k: 18	n:2500000
Cons ci ratio: 6.810045e-02	ci left: 1.278517e-03	ci right 1.369044e-03	k: 3308	n:2500000
KS ci ratio: 5.488890e-02	ci left: 1.980107e-03	ci right 2.092251e-03	k: 5089	n:2500000
ZNF567   2500000 perm   2565 sec   (975 perm/sec)   p_kst 2.035600e-03   p_cons 1.323200e-03   p_joint 7.200000e-06

Joint ci ratio: 8.993061e-01	ci left: 4.250181e-06	ci right 1.133375e-05	k: 18	n:2510000
Cons ci ratio: 6.801835e-02	ci left: 1.276557e-03	ci right 1.366831e-03	k: 3316	n:2510000
KS ci ratio: 5.479750e-02	ci left: 1.978898e-03	ci right 2.090782e-03	k: 5106	n:2510000
ZNF567   2510000 perm   2584 sec   (972 perm/sec)   p_kst 2.034263e-03   p_cons 1.321116e-03   p_joint 7.171315e-06

Joint ci ratio: 8.993061e-01	ci left: 4.233315e-06	ci right 1.128877e-05	k: 18	n:2520000
Cons ci ratio: 6.789566e-02	ci left: 1.276172e-03	ci right 1.366250e-03	k: 3328	n:2520000
KS ci ratio: 5.468518e-02	ci left: 1.979265e-03	ci right 2.090932e-03	k: 5127	n:2520000
ZNF567   2520000 perm   2603 sec   (968 perm/sec)   p_kst 2.034524e-03   p_cons 1.320635e-03   p_joint 7.142857e-06

Joint ci ratio: 8.993061e-01	ci left: 4.216583e-06	ci right 1.124415e-05	k: 18	n:2530000
Cons ci ratio: 6.774319e-02	ci left: 1.276956e-03	ci right 1.366879e-03	k: 3343	n:2530000
KS ci ratio: 5.459480e-02	ci left: 1.978069e-03	ci right 2.089479e-03	k: 5144	n:2530000
ZNF567   2530000 perm   2622 sec   (965 perm/sec)   p_kst 2.033202e-03   p_cons 1.321344e-03   p_joint 7.114625e-06

Joint ci ratio: 8.993061e-01	ci left: 4.199982e-06	ci right 1.119988e-05	k: 18	n:2540000
Cons ci ratio: 6.767248e-02	ci left: 1.274638e-03	ci right 1.364301e-03	k: 3350	n:2540000
KS ci ratio: 5.447843e-02	ci left: 1.978825e-03	ci right 2.090032e-03	k: 5166	n:2540000
ZNF567   2540000 perm   2641 sec   (962 perm/sec)   p_kst 2.033858e-03   p_cons 1.318898e-03   p_joint 7.086614e-06

Joint ci ratio: 8.993062e-01	ci left: 4.183511e-06	ci right 1.115596e-05	k: 18	n:2550000
Cons ci ratio: 6.761207e-02	ci left: 1.271952e-03	ci right 1.361343e-03	k: 3356	n:2550000
KS ci ratio: 5.435755e-02	ci left: 1.979962e-03	ci right 2.090978e-03	k: 5189	n:2550000
ZNF567   2550000 perm   2660 sec   (959 perm/sec)   p_kst 2.034902e-03   p_cons 1.316078e-03   p_joint 7.058824e-06

Joint ci ratio: 8.993062e-01	ci left: 4.167170e-06	ci right 1.111238e-05	k: 18	n:2560000
Cons ci ratio: 6.739149e-02	ci left: 1.275433e-03	ci right 1.364764e-03	k: 3378	n:2560000
KS ci ratio: 5.429491e-02	ci left: 1.976851e-03	ci right 2.087561e-03	k: 5201	n:2560000
ZNF567   2560000 perm   2679 sec   (956 perm/sec)   p_kst 2.031641e-03   p_cons 1.319531e-03   p_joint 7.031250e-06

Joint ci ratio: 1.012136e+00	ci left: 2.978186e-06	ci right 9.139914e-06	k: 14	n:2570000
Cons ci ratio: 6.721265e-02	ci left: 1.277356e-03	ci right 1.366575e-03	k: 3396	n:2570000
KS ci ratio: 5.417005e-02	ci left: 1.978371e-03	ci right 2.088904e-03	k: 5225	n:2570000
ZNF567   2570000 perm   2698 sec   (953 perm/sec)   p_kst 2.033074e-03   p_cons 1.321401e-03   p_joint 5.447471e-06

Joint ci ratio: 1.012137e+00	ci left: 2.966643e-06	ci right 9.104488e-06	k: 14	n:2580000
Cons ci ratio: 6.713371e-02	ci left: 1.275453e-03	ci right 1.364432e-03	k: 3404	n:2580000
KS ci ratio: 5.409771e-02	ci left: 1.976056e-03	ci right 2.086307e-03	k: 5239	n:2580000
ZNF567   2580000 perm   2717 sec   (950 perm/sec)   p_kst 2.030620e-03   p_cons 1.319380e-03   p_joint 5.426357e-06

Joint ci ratio: 1.012137e+00	ci left: 2.955188e-06	ci right 9.069335e-06	k: 14	n:2590000
Cons ci ratio: 6.706489e-02	ci left: 1.273186e-03	ci right 1.361912e-03	k: 3411	n:2590000
KS ci ratio: 5.399477e-02	ci left: 1.976044e-03	ci right 2.086078e-03	k: 5259	n:2590000
ZNF567   2590000 perm   2737 sec   (946 perm/sec)   p_kst 2.030502e-03   p_cons 1.316988e-03   p_joint 5.405405e-06

Joint ci ratio: 1.012137e+00	ci left: 2.943822e-06	ci right 9.034453e-06	k: 14	n:2600000
Cons ci ratio: 6.690816e-02	ci left: 1.274340e-03	ci right 1.362930e-03	k: 3427	n:2600000
KS ci ratio: 5.393337e-02	ci left: 1.972997e-03	ci right 2.082733e-03	k: 5271	n:2600000
ZNF567   2600000 perm   2756 sec   (943 perm/sec)   p_kst 2.027308e-03   p_cons 1.318077e-03   p_joint 5.384615e-06

Joint ci ratio: 9.799968e-01	ci left: 3.216626e-06	ci right 9.478993e-06	k: 15	n:2610000
Cons ci ratio: 6.679137e-02	ci left: 1.273979e-03	ci right 1.362383e-03	k: 3439	n:2610000
KS ci ratio: 5.379063e-02	ci left: 1.976021e-03	ci right 2.085625e-03	k: 5299	n:2610000
ZNF567   2610000 perm   2776 sec   (940 perm/sec)   p_kst 2.030268e-03   p_cons 1.317625e-03   p_joint 5.747126e-06

Joint ci ratio: 9.799968e-01	ci left: 3.204349e-06	ci right 9.442814e-06	k: 15	n:2620000
Cons ci ratio: 6.669454e-02	ci left: 1.272869e-03	ci right 1.361063e-03	k: 3449	n:2620000
KS ci ratio: 5.372486e-02	ci left: 1.973374e-03	ci right 2.082693e-03	k: 5312	n:2620000
ZNF567   2620000 perm   2795 sec   (937 perm/sec)   p_kst 2.027481e-03   p_cons 1.316412e-03   p_joint 5.725191e-06

Joint ci ratio: 9.799968e-01	ci left: 3.192165e-06	ci right 9.406910e-06	k: 15	n:2630000
Cons ci ratio: 6.658850e-02	ci left: 1.272142e-03	ci right 1.360141e-03	k: 3460	n:2630000
KS ci ratio: 5.361899e-02	ci left: 1.973748e-03	ci right 2.082866e-03	k: 5333	n:2630000
ZNF567   2630000 perm   2815 sec   (934 perm/sec)   p_kst 2.027757e-03   p_cons 1.315589e-03   p_joint 5.703422e-06

Joint ci ratio: 9.799968e-01	ci left: 3.180074e-06	ci right 9.371278e-06	k: 15	n:2640000
Cons ci ratio: 6.644465e-02	ci left: 1.272911e-03	ci right 1.360765e-03	k: 3475	n:2640000
KS ci ratio: 5.353880e-02	ci left: 1.972251e-03	ci right 2.081118e-03	k: 5349	n:2640000
ZNF567   2640000 perm   2835 sec   (931 perm/sec)   p_kst 2.026136e-03   p_cons 1.316288e-03   p_joint 5.681818e-06

Joint ci ratio: 9.799969e-01	ci left: 3.168074e-06	ci right 9.335914e-06	k: 15	n:2650000
Cons ci ratio: 6.633027e-02	ci left: 1.272560e-03	ci right 1.360233e-03	k: 3487	n:2650000
KS ci ratio: 5.340414e-02	ci left: 1.974861e-03	ci right 2.083590e-03	k: 5376	n:2650000
ZNF567   2650000 perm   2855 sec   (928 perm/sec)   p_kst 2.028679e-03   p_cons 1.315849e-03   p_joint 5.660377e-06

Joint ci ratio: 9.799969e-01	ci left: 3.156164e-06	ci right 9.300817e-06	k: 15	n:2660000
Cons ci ratio: 6.624491e-02	ci left: 1.271104e-03	ci right 1.358559e-03	k: 3496	n:2660000
KS ci ratio: 5.330510e-02	ci left: 1.974856e-03	ci right 2.083376e-03	k: 5396	n:2660000
ZNF567   2660000 perm   2875 sec   (925 perm/sec)   p_kst 2.028571e-03   p_cons 1.314286e-03   p_joint 5.639098e-06

Joint ci ratio: 9.799969e-01	ci left: 3.144343e-06	ci right 9.265983e-06	k: 15	n:2670000
Cons ci ratio: 6.614099e-02	ci left: 1.270395e-03	ci right 1.357659e-03	k: 3507	n:2670000
KS ci ratio: 5.320661e-02	ci left: 1.974850e-03	ci right 2.083163e-03	k: 5416	n:2670000
ZNF567   2670000 perm   2895 sec   (922 perm/sec)   p_kst 2.028464e-03   p_cons 1.313483e-03   p_joint 5.617978e-06

Joint ci ratio: 9.799969e-01	ci left: 3.132610e-06	ci right 9.231408e-06	k: 15	n:2680000
Cons ci ratio: 6.598126e-02	ci left: 1.271893e-03	ci right 1.359041e-03	k: 3524	n:2680000
KS ci ratio: 5.307932e-02	ci left: 1.977054e-03	ci right 2.085221e-03	k: 5442	n:2680000
ZNF567   2680000 perm   2915 sec   (919 perm/sec)   p_kst 2.030597e-03   p_cons 1.314925e-03   p_joint 5.597015e-06

Joint ci ratio: 9.507365e-01	ci left: 3.399774e-06	ci right 9.659089e-06	k: 16	n:2690000
Cons ci ratio: 6.586925e-02	ci left: 1.271552e-03	ci right 1.358523e-03	k: 3536	n:2690000
KS ci ratio: 5.295779e-02	ci left: 1.978875e-03	ci right 2.086886e-03	k: 5467	n:2690000
ZNF567   2690000 perm   2935 sec   (916 perm/sec)   p_kst 2.032342e-03   p_cons 1.314498e-03   p_joint 5.947955e-06

Joint ci ratio: 9.507365e-01	ci left: 3.387182e-06	ci right 9.623315e-06	k: 16	n:2700000
Cons ci ratio: 6.579495e-02	ci left: 1.269757e-03	ci right 1.356504e-03	k: 3544	n:2700000
KS ci ratio: 5.286121e-02	ci left: 1.978855e-03	ci right 2.086662e-03	k: 5487	n:2700000
ZNF567   2700000 perm   2956 sec   (913 perm/sec)   p_kst 2.032222e-03   p_cons 1.312593e-03   p_joint 5.925926e-06

Joint ci ratio: 9.507365e-01	ci left: 3.374684e-06	ci right 9.587804e-06	k: 16	n:2710000
Cons ci ratio: 6.570239e-02	ci left: 1.268701e-03	ci right 1.355249e-03	k: 3554	n:2710000
KS ci ratio: 5.273638e-02	ci left: 1.981020e-03	ci right 2.088683e-03	k: 5513	n:2710000
ZNF567   2710000 perm   2976 sec   (911 perm/sec)   p_kst 2.034317e-03   p_cons 1.311439e-03   p_joint 5.904059e-06

Joint ci ratio: 9.507365e-01	ci left: 3.362277e-06	ci right 9.552555e-06	k: 16	n:2720000
Cons ci ratio: 6.561021e-02	ci left: 1.267652e-03	ci right 1.354003e-03	k: 3564	n:2720000
KS ci ratio: 5.268395e-02	ci left: 1.977728e-03	ci right 2.085101e-03	k: 5524	n:2720000
ZNF567   2720000 perm   2996 sec   (908 perm/sec)   p_kst 2.030882e-03   p_cons 1.310294e-03   p_joint 5.882353e-06

Joint ci ratio: 9.507365e-01	ci left: 3.349961e-06	ci right 9.517564e-06	k: 16	n:2730000
Cons ci ratio: 6.551842e-02	ci left: 1.266612e-03	ci right 1.352766e-03	k: 3574	n:2730000
KS ci ratio: 5.260311e-02	ci left: 1.976629e-03	ci right 2.083773e-03	k: 5541	n:2730000
ZNF567   2730000 perm   3016 sec   (905 perm/sec)   p_kst 2.029670e-03   p_cons 1.309158e-03   p_joint 5.860806e-06

Joint ci ratio: 9.507365e-01	ci left: 3.337734e-06	ci right 9.482829e-06	k: 16	n:2740000
Cons ci ratio: 6.539050e-02	ci left: 1.267015e-03	ci right 1.353022e-03	k: 3588	n:2740000
KS ci ratio: 5.248010e-02	ci left: 1.978779e-03	ci right 2.085781e-03	k: 5567	n:2740000
ZNF567   2740000 perm   3037 sec   (902 perm/sec)   p_kst 2.031752e-03   p_cons 1.309489e-03   p_joint 5.839416e-06

Joint ci ratio: 9.507365e-01	ci left: 3.325597e-06	ci right 9.448346e-06	k: 16	n:2750000
Cons ci ratio: 6.528147e-02	ci left: 1.266700e-03	ci right 1.352537e-03	k: 3600	n:2750000
KS ci ratio: 5.238610e-02	ci left: 1.978761e-03	ci right 2.085565e-03	k: 5587	n:2750000
ZNF567   2750000 perm   3058 sec   (899 perm/sec)   p_kst 2.031636e-03   p_cons 1.309091e-03   p_joint 5.818182e-06

Joint ci ratio: 9.507365e-01	ci left: 3.313548e-06	ci right 9.414113e-06	k: 16	n:2760000
Cons ci ratio: 6.518201e-02	ci left: 1.266031e-03	ci right 1.351687e-03	k: 3611	n:2760000
KS ci ratio: 5.225061e-02	ci left: 1.981961e-03	ci right 2.088653e-03	k: 5616	n:2760000
ZNF567   2760000 perm   3078 sec   (897 perm/sec)   p_kst 2.034783e-03   p_cons 1.308333e-03   p_joint 5.797101e-06

Joint ci ratio: 9.507366e-01	ci left: 3.301586e-06	ci right 9.380127e-06	k: 16	n:2770000
Cons ci ratio: 6.507402e-02	ci left: 1.265722e-03	ci right 1.351210e-03	k: 3623	n:2770000
KS ci ratio: 5.214857e-02	ci left: 1.982645e-03	ci right 2.089159e-03	k: 5638	n:2770000
ZNF567   2770000 perm   3099 sec   (894 perm/sec)   p_kst 2.035379e-03   p_cons 1.307942e-03   p_joint 5.776173e-06

Joint ci ratio: 9.507366e-01	ci left: 3.289709e-06	ci right 9.346385e-06	k: 16	n:2780000
Cons ci ratio: 6.491295e-02	ci left: 1.267539e-03	ci right 1.352930e-03	k: 3641	n:2780000
KS ci ratio: 5.203332e-02	ci left: 1.984389e-03	ci right 2.090753e-03	k: 5663	n:2780000
ZNF567   2780000 perm   3120 sec   (891 perm/sec)   p_kst 2.037050e-03   p_cons 1.309712e-03   p_joint 5.755396e-06

Joint ci ratio: 9.507366e-01	ci left: 3.277918e-06	ci right 9.312886e-06	k: 16	n:2790000
Cons ci ratio: 6.477966e-02	ci left: 1.268285e-03	ci right 1.353544e-03	k: 3656	n:2790000
KS ci ratio: 5.193254e-02	ci left: 1.985059e-03	ci right 2.091247e-03	k: 5685	n:2790000
ZNF567   2790000 perm   3141 sec   (888 perm/sec)   p_kst 2.037634e-03   p_cons 1.310394e-03   p_joint 5.734767e-06

Joint ci ratio: 9.507366e-01	ci left: 3.266211e-06	ci right 9.279625e-06	k: 16	n:2800000
Cons ci ratio: 6.459438e-02	ci left: 1.271134e-03	ci right 1.356331e-03	k: 3677	n:2800000
KS ci ratio: 5.182325e-02	ci left: 1.986430e-03	ci right 2.092461e-03	k: 5709	n:2800000
ZNF567   2800000 perm   3162 sec   (886 perm/sec)   p_kst 2.038929e-03   p_cons 1.313214e-03   p_joint 5.714286e-06

Joint ci ratio: 9.507366e-01	ci left: 3.254588e-06	ci right 9.246602e-06	k: 16	n:2810000
Cons ci ratio: 6.448052e-02	ci left: 1.271162e-03	ci right 1.356205e-03	k: 3690	n:2810000
KS ci ratio: 5.170561e-02	ci left: 1.988494e-03	ci right 2.094387e-03	k: 5735	n:2810000
ZNF567   2810000 perm   3183 sec   (883 perm/sec)   p_kst 2.040925e-03   p_cons 1.313167e-03   p_joint 5.693950e-06

Joint ci ratio: 9.507366e-01	ci left: 3.243047e-06	ci right 9.213813e-06	k: 16	n:2820000
Cons ci ratio: 6.434119e-02	ci left: 1.272237e-03	ci right 1.357161e-03	k: 3706	n:2820000
KS ci ratio: 5.160673e-02	ci left: 1.989143e-03	ci right 2.094862e-03	k: 5757	n:2820000
ZNF567   2820000 perm   3203 sec   (880 perm/sec)   p_kst 2.041489e-03   p_cons 1.314184e-03   p_joint 5.673759e-06

Joint ci ratio: 9.239498e-01	ci left: 3.499342e-06	ci right 9.617879e-06	k: 17	n:2830000
Cons ci ratio: 6.417686e-02	ci left: 1.274347e-03	ci right 1.359187e-03	k: 3725	n:2830000
KS ci ratio: 5.153075e-02	ci left: 1.988044e-03	ci right 2.093545e-03	k: 5774	n:2830000
ZNF567   2830000 perm   3225 sec   (878 perm/sec)   p_kst 2.040283e-03   p_cons 1.316254e-03   p_joint 6.007067e-06

Joint ci ratio: 9.239498e-01	ci left: 3.487020e-06	ci right 9.584013e-06	k: 17	n:2840000
Cons ci ratio: 6.406520e-02	ci left: 1.274364e-03	ci right 1.359052e-03	k: 3738	n:2840000
KS ci ratio: 5.142397e-02	ci left: 1.989386e-03	ci right 2.094732e-03	k: 5798	n:2840000
ZNF567   2840000 perm   3246 sec   (875 perm/sec)   p_kst 2.041549e-03   p_cons 1.316197e-03   p_joint 5.985915e-06

Joint ci ratio: 9.239498e-01	ci left: 3.474785e-06	ci right 9.550385e-06	k: 17	n:2850000
Cons ci ratio: 6.394559e-02	ci left: 1.274726e-03	ci right 1.359274e-03	k: 3752	n:2850000
KS ci ratio: 5.137092e-02	ci left: 1.986562e-03	ci right 2.091647e-03	k: 5810	n:2850000
ZNF567   2850000 perm   3267 sec   (872 perm/sec)   p_kst 2.038596e-03   p_cons 1.316491e-03   p_joint 5.964912e-06

Joint ci ratio: 9.239498e-01	ci left: 3.462635e-06	ci right 9.516992e-06	k: 17	n:2860000
Cons ci ratio: 6.386060e-02	ci left: 1.273710e-03	ci right 1.358074e-03	k: 3762	n:2860000
KS ci ratio: 5.128275e-02	ci left: 1.986519e-03	ci right 2.091416e-03	k: 5830	n:2860000
ZNF567   2860000 perm   3289 sec   (870 perm/sec)   p_kst 2.038462e-03   p_cons 1.315385e-03   p_joint 5.944056e-06

Joint ci ratio: 9.239498e-01	ci left: 3.450570e-06	ci right 9.483832e-06	k: 17	n:2870000
Cons ci ratio: 6.375903e-02	ci left: 1.273386e-03	ci right 1.357590e-03	k: 3774	n:2870000
KS ci ratio: 5.121257e-02	ci left: 1.985101e-03	ci right 2.089776e-03	k: 5846	n:2870000
ZNF567   2870000 perm   3310 sec   (867 perm/sec)   p_kst 2.036934e-03   p_cons 1.314983e-03   p_joint 5.923345e-06

Joint ci ratio: 9.239498e-01	ci left: 3.438589e-06	ci right 9.450902e-06	k: 17	n:2880000
Cons ci ratio: 6.361591e-02	ci left: 1.274774e-03	ci right 1.358873e-03	k: 3791	n:2880000
KS ci ratio: 5.115143e-02	ci left: 1.983007e-03	ci right 2.087443e-03	k: 5860	n:2880000
ZNF567   2880000 perm   3331 sec   (864 perm/sec)   p_kst 2.034722e-03   p_cons 1.316319e-03   p_joint 5.902778e-06

Joint ci ratio: 8.993066e-01	ci left: 3.691333e-06	ci right 9.843498e-06	k: 18	n:2890000
Cons ci ratio: 6.349044e-02	ci left: 1.275471e-03	ci right 1.359444e-03	k: 3806	n:2890000
KS ci ratio: 5.106873e-02	ci left: 1.982636e-03	ci right 2.086878e-03	k: 5879	n:2890000
ZNF567   2890000 perm   3353 sec   (862 perm/sec)   p_kst 2.034256e-03   p_cons 1.316955e-03   p_joint 6.228374e-06

Joint ci ratio: 9.239498e-01	ci left: 3.414875e-06	ci right 9.385724e-06	k: 17	n:2900000
Cons ci ratio: 6.338231e-02	ci left: 1.275484e-03	ci right 1.359310e-03	k: 3819	n:2900000
KS ci ratio: 5.096047e-02	ci left: 1.984310e-03	ci right 2.088413e-03	k: 5904	n:2900000
ZNF567   2900000 perm   3375 sec   (859 perm/sec)   p_kst 2.035862e-03   p_cons 1.316897e-03   p_joint 5.862069e-06

Joint ci ratio: 9.239498e-01	ci left: 3.403140e-06	ci right 9.353470e-06	k: 17	n:2910000
Cons ci ratio: 6.324996e-02	ci left: 1.276512e-03	ci right 1.360224e-03	k: 3835	n:2910000
KS ci ratio: 5.087439e-02	ci left: 1.984276e-03	ci right 2.088196e-03	k: 5924	n:2910000
ZNF567   2910000 perm   3397 sec   (857 perm/sec)   p_kst 2.035739e-03   p_cons 1.317869e-03   p_joint 5.841924e-06

Joint ci ratio: 9.239499e-01	ci left: 3.391485e-06	ci right 9.321438e-06	k: 17	n:2920000
Cons ci ratio: 6.314306e-02	ci left: 1.276522e-03	ci right 1.360088e-03	k: 3848	n:2920000
KS ci ratio: 5.077164e-02	ci left: 1.985595e-03	ci right 2.089369e-03	k: 5948	n:2920000
ZNF567   2920000 perm   3418 sec   (854 perm/sec)   p_kst 2.036986e-03   p_cons 1.317808e-03   p_joint 5.821918e-06

Joint ci ratio: 8.993066e-01	ci left: 3.640939e-06	ci right 9.709116e-06	k: 18	n:2930000
Cons ci ratio: 6.305305e-02	ci left: 1.275861e-03	ci right 1.359260e-03	k: 3859	n:2930000
KS ci ratio: 5.064402e-02	ci left: 1.988928e-03	ci right 2.092606e-03	k: 5978	n:2930000
ZNF567   2930000 perm   3440 sec   (852 perm/sec)   p_kst 2.040273e-03   p_cons 1.317065e-03   p_joint 6.143345e-06

Joint ci ratio: 8.993066e-01	ci left: 3.628555e-06	ci right 9.676092e-06	k: 18	n:2940000
Cons ci ratio: 6.291462e-02	ci left: 1.277212e-03	ci right 1.360510e-03	k: 3876	n:2940000
KS ci ratio: 5.054687e-02	ci left: 1.989887e-03	ci right 2.093411e-03	k: 6001	n:2940000
ZNF567   2940000 perm   3462 sec   (849 perm/sec)   p_kst 2.041156e-03   p_cons 1.318367e-03   p_joint 6.122449e-06

Joint ci ratio: 8.993066e-01	ci left: 3.616255e-06	ci right 9.643291e-06	k: 18	n:2950000
Cons ci ratio: 6.284176e-02	ci left: 1.275886e-03	ci right 1.358997e-03	k: 3885	n:2950000
KS ci ratio: 5.045447e-02	ci left: 1.990505e-03	ci right 2.093866e-03	k: 6023	n:2950000
ZNF567   2950000 perm   3484 sec   (847 perm/sec)   p_kst 2.041695e-03   p_cons 1.316949e-03   p_joint 6.101695e-06

Joint ci ratio: 8.993066e-01	ci left: 3.604038e-06	ci right 9.610713e-06	k: 18	n:2960000
Cons ci ratio: 6.274497e-02	ci left: 1.275566e-03	ci right 1.358523e-03	k: 3897	n:2960000
KS ci ratio: 5.035006e-02	ci left: 1.992120e-03	ci right 2.095345e-03	k: 6048	n:2960000
ZNF567   2960000 perm   3506 sec   (844 perm/sec)   p_kst 2.043243e-03   p_cons 1.316554e-03   p_joint 6.081081e-06

Joint ci ratio: 8.993066e-01	ci left: 3.591903e-06	ci right 9.578354e-06	k: 18	n:2970000
Cons ci ratio: 6.266468e-02	ci left: 1.274585e-03	ci right 1.357369e-03	k: 3907	n:2970000
KS ci ratio: 5.022973e-02	ci left: 1.995054e-03	ci right 2.098177e-03	k: 6077	n:2970000
ZNF567   2970000 perm   3528 sec   (842 perm/sec)   p_kst 2.046128e-03   p_cons 1.315488e-03   p_joint 6.060606e-06

Joint ci ratio: 8.993067e-01	ci left: 3.579850e-06	ci right 9.546212e-06	k: 18	n:2980000
Cons ci ratio: 6.257669e-02	ci left: 1.273941e-03	ci right 1.356563e-03	k: 3918	n:2980000
KS ci ratio: 5.016378e-02	ci left: 1.993661e-03	ci right 2.096572e-03	k: 6093	n:2980000
ZNF567   2980000 perm   3550 sec   (839 perm/sec)   p_kst 2.044631e-03   p_cons 1.314765e-03   p_joint 6.040268e-06

Joint ci ratio: 8.993067e-01	ci left: 3.567877e-06	ci right 9.514284e-06	k: 18	n:2990000
Cons ci ratio: 6.248908e-02	ci left: 1.273302e-03	ci right 1.355762e-03	k: 3929	n:2990000
KS ci ratio: 5.007346e-02	ci left: 1.994259e-03	ci right 2.097010e-03	k: 6115	n:2990000
ZNF567   2990000 perm   3573 sec   (837 perm/sec)   p_kst 2.045151e-03   p_cons 1.314047e-03   p_joint 6.020067e-06

Joint ci ratio: 8.993067e-01	ci left: 3.555984e-06	ci right 9.482570e-06	k: 18	n:3000000
Cons ci ratio: 6.239390e-02	ci left: 1.272995e-03	ci right 1.355306e-03	k: 3941	n:3000000
KS ci ratio: 5.000404e-02	ci left: 1.993207e-03	ci right 2.095758e-03	k: 6132	n:3000000
ZNF567   3000000 perm   3595 sec   (835 perm/sec)   p_kst 2.044000e-03   p_cons 1.313667e-03   p_joint 6.000000e-06

Joint ci ratio: 8.993067e-01	ci left: 3.544170e-06	ci right 9.451067e-06	k: 18	n:3010000
Cons ci ratio: 6.228339e-02	ci left: 1.273345e-03	ci right 1.355527e-03	k: 3955	n:3010000
KS ci ratio: 4.997157e-02	ci left: 1.989210e-03	ci right 2.091486e-03	k: 6140	n:3010000
ZNF567   3010000 perm   3617 sec   (832 perm/sec)   p_kst 2.039867e-03   p_cons 1.313953e-03   p_joint 5.980066e-06

Joint ci ratio: 8.993067e-01	ci left: 3.532434e-06	ci right 9.419772e-06	k: 18	n:3020000
Cons ci ratio: 6.220486e-02	ci left: 1.272388e-03	ci right 1.354401e-03	k: 3965	n:3020000
KS ci ratio: 4.990257e-02	ci left: 1.988182e-03	ci right 2.090260e-03	k: 6157	n:3020000
ZNF567   3020000 perm   3640 sec   (830 perm/sec)   p_kst 2.038742e-03   p_cons 1.312914e-03   p_joint 5.960265e-06

Joint ci ratio: 8.993067e-01	ci left: 3.520776e-06	ci right 9.388684e-06	k: 18	n:3030000
Cons ci ratio: 6.205633e-02	ci left: 1.274362e-03	ci right 1.356299e-03	k: 3984	n:3030000
KS ci ratio: 4.980962e-02	ci left: 1.989116e-03	ci right 2.091047e-03	k: 6180	n:3030000
ZNF567   3030000 perm   3663 sec   (827 perm/sec)   p_kst 2.039604e-03   p_cons 1.314851e-03   p_joint 5.940594e-06

Joint ci ratio: 8.993067e-01	ci left: 3.509195e-06	ci right 9.357800e-06	k: 18	n:3040000
Cons ci ratio: 6.196311e-02	ci left: 1.274056e-03	ci right 1.355846e-03	k: 3996	n:3040000
KS ci ratio: 4.973325e-02	ci left: 1.988745e-03	ci right 2.090496e-03	k: 6199	n:3040000
ZNF567   3040000 perm   3687 sec   (825 perm/sec)   p_kst 2.039145e-03   p_cons 1.314474e-03   p_joint 5.921053e-06

Joint ci ratio: 8.993067e-01	ci left: 3.497689e-06	ci right 9.327119e-06	k: 18	n:3050000
Cons ci ratio: 6.186259e-02	ci left: 1.274075e-03	ci right 1.355729e-03	k: 4009	n:3050000
KS ci ratio: 4.963325e-02	ci left: 1.990320e-03	ci right 2.091941e-03	k: 6224	n:3050000
ZNF567   3050000 perm   3709 sec   (822 perm/sec)   p_kst 2.040656e-03   p_cons 1.314426e-03   p_joint 5.901639e-06

Joint ci ratio: 8.993067e-01	ci left: 3.486259e-06	ci right 9.296638e-06	k: 18	n:3060000
Cons ci ratio: 6.180873e-02	ci left: 1.272164e-03	ci right 1.353621e-03	k: 4016	n:3060000
KS ci ratio: 4.954973e-02	ci left: 1.990593e-03	ci right 2.092052e-03	k: 6245	n:3060000
ZNF567   3060000 perm   3732 sec   (820 perm/sec)   p_kst 2.040850e-03   p_cons 1.312418e-03   p_joint 5.882353e-06

Joint ci ratio: 8.993067e-01	ci left: 3.474903e-06	ci right 9.266356e-06	k: 18	n:3070000
Cons ci ratio: 6.169363e-02	ci left: 1.272830e-03	ci right 1.354174e-03	k: 4031	n:3070000
KS ci ratio: 4.945083e-02	ci left: 1.992152e-03	ci right 2.093482e-03	k: 6270	n:3070000
ZNF567   3070000 perm   3754 sec   (818 perm/sec)   p_kst 2.042345e-03   p_cons 1.313029e-03   p_joint 5.863192e-06

Joint ci ratio: 8.993068e-01	ci left: 3.463621e-06	ci right 9.236270e-06	k: 18	n:3080000
Cons ci ratio: 6.160204e-02	ci left: 1.272534e-03	ci right 1.353733e-03	k: 4043	n:3080000
KS ci ratio: 4.939577e-02	ci left: 1.990173e-03	ci right 2.091286e-03	k: 6284	n:3080000
ZNF567   3080000 perm   3777 sec   (815 perm/sec)   p_kst 2.040260e-03   p_cons 1.312662e-03   p_joint 5.844156e-06

Joint ci ratio: 8.993068e-01	ci left: 3.452412e-06	ci right 9.206379e-06	k: 18	n:3090000
Cons ci ratio: 6.151086e-02	ci left: 1.272239e-03	ci right 1.353295e-03	k: 4055	n:3090000
KS ci ratio: 4.926260e-02	ci left: 1.994600e-03	ci right 2.095657e-03	k: 6318	n:3090000
ZNF567   3090000 perm   3800 sec   (813 perm/sec)   p_kst 2.044660e-03   p_cons 1.312298e-03   p_joint 5.825243e-06

Joint ci ratio: 8.993068e-01	ci left: 3.441275e-06	ci right 9.176681e-06	k: 18	n:3100000
Cons ci ratio: 6.142008e-02	ci left: 1.271947e-03	ci right 1.352860e-03	k: 4067	n:3100000
KS ci ratio: 4.917705e-02	ci left: 1.995175e-03	ci right 2.096081e-03	k: 6340	n:3100000
ZNF567   3100000 perm   3823 sec   (811 perm/sec)   p_kst 2.045161e-03   p_cons 1.311935e-03   p_joint 5.806452e-06

Joint ci ratio: 8.993068e-01	ci left: 3.430210e-06	ci right 9.147174e-06	k: 18	n:3110000
Cons ci ratio: 6.130714e-02	ci left: 1.272606e-03	ci right 1.353407e-03	k: 4082	n:3110000
KS ci ratio: 4.909195e-02	ci left: 1.995747e-03	ci right 2.096502e-03	k: 6362	n:3110000
ZNF567   3110000 perm   3846 sec   (809 perm/sec)   p_kst 2.045659e-03   p_cons 1.312540e-03   p_joint 5.787781e-06

Joint ci ratio: 8.993068e-01	ci left: 3.419215e-06	ci right 9.117857e-06	k: 18	n:3120000
Cons ci ratio: 6.113509e-02	ci left: 1.275786e-03	ci right 1.356554e-03	k: 4105	n:3120000
KS ci ratio: 4.901498e-02	ci left: 1.995682e-03	ci right 2.096272e-03	k: 6382	n:3120000
ZNF567   3120000 perm   3869 sec   (806 perm/sec)   p_kst 2.045513e-03   p_cons 1.315705e-03   p_joint 5.769231e-06

Joint ci ratio: 8.993068e-01	ci left: 3.408291e-06	ci right 9.088726e-06	k: 18	n:3130000
Cons ci ratio: 6.104596e-02	ci left: 1.275486e-03	ci right 1.356112e-03	k: 4117	n:3130000
KS ci ratio: 4.893455e-02	ci left: 1.995933e-03	ci right 2.096366e-03	k: 6403	n:3130000
ZNF567   3130000 perm   3892 sec   (804 perm/sec)   p_kst 2.045687e-03   p_cons 1.315335e-03   p_joint 5.750799e-06

Joint ci ratio: 8.993068e-01	ci left: 3.397437e-06	ci right 9.059781e-06	k: 18	n:3140000
Cons ci ratio: 6.094245e-02	ci left: 1.275814e-03	ci right 1.356320e-03	k: 4131	n:3140000
KS ci ratio: 4.888883e-02	ci left: 1.993351e-03	ci right 2.093558e-03	k: 6415	n:3140000
ZNF567   3140000 perm   3916 sec   (802 perm/sec)   p_kst 2.042994e-03   p_cons 1.315605e-03   p_joint 5.732484e-06

Joint ci ratio: 8.993068e-01	ci left: 3.386651e-06	ci right 9.031020e-06	k: 18	n:3150000
Cons ci ratio: 6.083211e-02	ci left: 1.276453e-03	ci right 1.356849e-03	k: 4146	n:3150000
KS ci ratio: 4.886229e-02	ci left: 1.989218e-03	ci right 2.089161e-03	k: 6422	n:3150000
ZNF567   3150000 perm   3940 sec   (800 perm/sec)   p_kst 2.038730e-03   p_cons 1.316190e-03   p_joint 5.714286e-06

Joint ci ratio: 8.993068e-01	ci left: 3.375934e-06	ci right 9.002441e-06	k: 18	n:3160000
Cons ci ratio: 6.076625e-02	ci left: 1.275219e-03	ci right 1.355446e-03	k: 4155	n:3160000
KS ci ratio: 4.879778e-02	ci left: 1.988237e-03	ci right 2.087995e-03	k: 6439	n:3160000
ZNF567   3160000 perm   3964 sec   (797 perm/sec)   p_kst 2.037658e-03   p_cons 1.314873e-03   p_joint 5.696203e-06

Joint ci ratio: 8.993068e-01	ci left: 3.365284e-06	ci right 8.974042e-06	k: 18	n:3170000
Cons ci ratio: 6.066415e-02	ci left: 1.275545e-03	ci right 1.355654e-03	k: 4169	n:3170000
KS ci ratio: 4.871463e-02	ci left: 1.988821e-03	ci right 2.088433e-03	k: 6461	n:3170000
ZNF567   3170000 perm   3987 sec   (795 perm/sec)   p_kst 2.038170e-03   p_cons 1.315142e-03   p_joint 5.678233e-06

Joint ci ratio: 8.993068e-01	ci left: 3.354702e-06	ci right 8.945822e-06	k: 18	n:3180000
Cons ci ratio: 6.059157e-02	ci left: 1.274631e-03	ci right 1.354583e-03	k: 4179	n:3180000
KS ci ratio: 4.864694e-02	ci left: 1.988158e-03	ci right 2.087595e-03	k: 6479	n:3180000
ZNF567   3180000 perm   4011 sec   (793 perm/sec)   p_kst 2.037421e-03   p_cons 1.314151e-03   p_joint 5.660377e-06

Joint ci ratio: 8.993069e-01	ci left: 3.344185e-06	ci right 8.917779e-06	k: 18	n:3190000
Cons ci ratio: 6.046870e-02	ci left: 1.275884e-03	ci right 1.355747e-03	k: 4196	n:3190000
KS ci ratio: 4.857579e-02	ci left: 1.987809e-03	ci right 2.087079e-03	k: 6498	n:3190000
ZNF567   3190000 perm   4035 sec   (791 perm/sec)   p_kst 2.036991e-03   p_cons 1.315361e-03   p_joint 5.642633e-06

Joint ci ratio: 8.993069e-01	ci left: 3.333735e-06	ci right 8.889911e-06	k: 18	n:3200000
Cons ci ratio: 6.036809e-02	ci left: 1.276206e-03	ci right 1.355951e-03	k: 4210	n:3200000
KS ci ratio: 4.851241e-02	ci left: 1.986845e-03	ci right 2.085934e-03	k: 6515	n:3200000
ZNF567   3200000 perm   4061 sec   (788 perm/sec)   p_kst 2.035937e-03   p_cons 1.315625e-03   p_joint 5.625000e-06

Joint ci ratio: 8.993069e-01	ci left: 3.323349e-06	ci right 8.862216e-06	k: 18	n:3210000
Cons ci ratio: 6.030372e-02	ci left: 1.274991e-03	ci right 1.354573e-03	k: 4219	n:3210000
KS ci ratio: 4.840845e-02	ci left: 1.989273e-03	ci right 2.088264e-03	k: 6543	n:3210000
ZNF567   3210000 perm   4086 sec   (786 perm/sec)   p_kst 2.038318e-03   p_cons 1.314330e-03   p_joint 5.607477e-06

Joint ci ratio: 8.993069e-01	ci left: 3.313028e-06	ci right 8.834694e-06	k: 18	n:3220000
Cons ci ratio: 6.019681e-02	ci left: 1.275620e-03	ci right 1.355095e-03	k: 4234	n:3220000
KS ci ratio: 4.834203e-02	ci left: 1.988617e-03	ci right 2.087437e-03	k: 6561	n:3220000
ZNF567   3220000 perm   4110 sec   (783 perm/sec)   p_kst 2.037578e-03   p_cons 1.314907e-03   p_joint 5.590062e-06

Joint ci ratio: 8.993069e-01	ci left: 3.302771e-06	ci right 8.807342e-06	k: 18	n:3230000
Cons ci ratio: 6.010464e-02	ci left: 1.275635e-03	ci right 1.354985e-03	k: 4247	n:3230000
KS ci ratio: 4.828324e-02	ci left: 1.987354e-03	ci right 2.085988e-03	k: 6577	n:3230000
ZNF567   3230000 perm   4134 sec   (781 perm/sec)   p_kst 2.036223e-03   p_cons 1.314861e-03   p_joint 5.572755e-06

Joint ci ratio: 7.279224e-01	ci left: 5.742537e-06	ci right 1.249004e-05	k: 28	n:3240000
Cons ci ratio: 5.998469e-02	ci left: 1.276866e-03	ci right 1.356128e-03	k: 4264	n:3240000
KS ci ratio: 4.821733e-02	ci left: 1.986709e-03	ci right 2.085172e-03	k: 6595	n:3240000
ZNF567   3240000 perm   4158 sec   (779 perm/sec)   p_kst 2.035494e-03   p_cons 1.316049e-03   p_joint 8.641975e-06

Joint ci ratio: 7.279224e-01	ci left: 5.724868e-06	ci right 1.245161e-05	k: 28	n:3250000
Cons ci ratio: 5.989349e-02	ci left: 1.276877e-03	ci right 1.356016e-03	k: 4277	n:3250000
KS ci ratio: 4.816629e-02	ci left: 1.984852e-03	ci right 2.083116e-03	k: 6609	n:3250000
ZNF567   3250000 perm   4183 sec   (777 perm/sec)   p_kst 2.033538e-03   p_cons 1.316000e-03   p_joint 8.615385e-06

Joint ci ratio: 7.279224e-01	ci left: 5.707307e-06	ci right 1.241341e-05	k: 28	n:3260000
Cons ci ratio: 5.982364e-02	ci left: 1.275982e-03	ci right 1.354969e-03	k: 4287	n:3260000
KS ci ratio: 4.808995e-02	ci left: 1.985128e-03	ci right 2.083245e-03	k: 6630	n:3260000
ZNF567   3260000 perm   4207 sec   (775 perm/sec)   p_kst 2.033742e-03   p_cons 1.315031e-03   p_joint 8.588957e-06

Joint ci ratio: 7.156874e-01	ci left: 5.939382e-06	ci right 1.273662e-05	k: 29	n:3270000
Cons ci ratio: 5.968455e-02	ci left: 1.278105e-03	ci right 1.357033e-03	k: 4307	n:3270000
KS ci ratio: 4.801760e-02	ci left: 1.985100e-03	ci right 2.083064e-03	k: 6650	n:3270000
ZNF567   3270000 perm   4232 sec   (773 perm/sec)   p_kst 2.033639e-03   p_cons 1.317125e-03   p_joint 8.868502e-06

Joint ci ratio: 7.156874e-01	ci left: 5.921275e-06	ci right 1.269779e-05	k: 29	n:3280000
Cons ci ratio: 5.958779e-02	ci left: 1.278413e-03	ci right 1.357228e-03	k: 4321	n:3280000
KS ci ratio: 4.794917e-02	ci left: 1.984771e-03	ci right 2.082575e-03	k: 6669	n:3280000
ZNF567   3280000 perm   4256 sec   (771 perm/sec)   p_kst 2.033232e-03   p_cons 1.317378e-03   p_joint 8.841463e-06

Joint ci ratio: 7.156874e-01	ci left: 5.903277e-06	ci right 1.265920e-05	k: 29	n:3290000
Cons ci ratio: 5.952589e-02	ci left: 1.277222e-03	ci right 1.355879e-03	k: 4330	n:3290000
KS ci ratio: 4.789179e-02	ci left: 1.983543e-03	ci right 2.081167e-03	k: 6685	n:3290000
ZNF567   3290000 perm   4280 sec   (769 perm/sec)   p_kst 2.031915e-03   p_cons 1.316109e-03   p_joint 8.814590e-06

Joint ci ratio: 7.156874e-01	ci left: 5.885388e-06	ci right 1.262084e-05	k: 29	n:3300000
Cons ci ratio: 5.939569e-02	ci left: 1.279023e-03	ci right 1.357613e-03	k: 4349	n:3300000
KS ci ratio: 4.778464e-02	ci left: 1.986514e-03	ci right 2.084060e-03	k: 6715	n:3300000
ZNF567   3300000 perm   4305 sec   (767 perm/sec)   p_kst 2.034848e-03   p_cons 1.317879e-03   p_joint 8.787879e-06

Joint ci ratio: 7.156875e-01	ci left: 5.867607e-06	ci right 1.258271e-05	k: 29	n:3310000
Cons ci ratio: 5.932757e-02	ci left: 1.278136e-03	ci right 1.356578e-03	k: 4359	n:3310000
KS ci ratio: 4.770300e-02	ci left: 1.987379e-03	ci right 2.084795e-03	k: 6738	n:3310000
ZNF567   3310000 perm   4330 sec   (765 perm/sec)   p_kst 2.035650e-03   p_cons 1.316918e-03   p_joint 8.761329e-06

Joint ci ratio: 7.156875e-01	ci left: 5.849934e-06	ci right 1.254481e-05	k: 29	n:3320000
Cons ci ratio: 5.920544e-02	ci left: 1.279627e-03	ci right 1.357994e-03	k: 4377	n:3320000
KS ci ratio: 4.762885e-02	ci left: 1.987642e-03	ci right 2.084916e-03	k: 6759	n:3320000
ZNF567   3320000 perm   4354 sec   (762 perm/sec)   p_kst 2.035843e-03   p_cons 1.318373e-03   p_joint 8.734940e-06

Joint ci ratio: 7.156875e-01	ci left: 5.832366e-06	ci right 1.250713e-05	k: 29	n:3330000
Cons ci ratio: 5.915146e-02	ci left: 1.278151e-03	ci right 1.356354e-03	k: 4385	n:3330000
KS ci ratio: 4.755855e-02	ci left: 1.987608e-03	ci right 2.084733e-03	k: 6779	n:3330000
ZNF567   3330000 perm   4379 sec   (761 perm/sec)   p_kst 2.035736e-03   p_cons 1.316817e-03   p_joint 8.708709e-06

Joint ci ratio: 7.156875e-01	ci left: 5.814904e-06	ci right 1.246969e-05	k: 29	n:3340000
Cons ci ratio: 5.904384e-02	ci left: 1.279044e-03	ci right 1.357154e-03	k: 4401	n:3340000
KS ci ratio: 4.749556e-02	ci left: 1.986982e-03	ci right 2.083944e-03	k: 6797	n:3340000
ZNF567   3340000 perm   4403 sec   (759 perm/sec)   p_kst 2.035030e-03   p_cons 1.317665e-03   p_joint 8.682635e-06

Joint ci ratio: 7.156875e-01	ci left: 5.797546e-06	ci right 1.243247e-05	k: 29	n:3350000
Cons ci ratio: 5.891678e-02	ci left: 1.280814e-03	ci right 1.358858e-03	k: 4420	n:3350000
KS ci ratio: 4.743282e-02	ci left: 1.986360e-03	ci right 2.083160e-03	k: 6815	n:3350000
ZNF567   3350000 perm   4428 sec   (757 perm/sec)   p_kst 2.034328e-03   p_cons 1.319403e-03   p_joint 8.656716e-06

Joint ci ratio: 7.156875e-01	ci left: 5.780292e-06	ci right 1.239546e-05	k: 29	n:3360000
Cons ci ratio: 5.874418e-02	ci left: 1.284627e-03	ci right 1.362665e-03	k: 4446	n:3360000
KS ci ratio: 4.737380e-02	ci left: 1.985448e-03	ci right 2.082080e-03	k: 6832	n:3360000
ZNF567   3360000 perm   4453 sec   (755 perm/sec)   p_kst 2.033333e-03   p_cons 1.323214e-03   p_joint 8.630952e-06

Joint ci ratio: 7.156875e-01	ci left: 5.763139e-06	ci right 1.235868e-05	k: 29	n:3370000
Cons ci ratio: 5.869146e-02	ci left: 1.283154e-03	ci right 1.361031e-03	k: 4454	n:3370000
KS ci ratio: 4.731500e-02	ci left: 1.984541e-03	ci right 2.081006e-03	k: 6849	n:3370000
ZNF567   3370000 perm   4478 sec   (753 perm/sec)   p_kst 2.032344e-03   p_cons 1.321662e-03   p_joint 8.605341e-06

Joint ci ratio: 7.156875e-01	ci left: 5.746089e-06	ci right 1.232212e-05	k: 29	n:3380000
Cons ci ratio: 5.863230e-02	ci left: 1.281981e-03	ci right 1.359706e-03	k: 4463	n:3380000
KS ci ratio: 4.726332e-02	ci left: 1.983055e-03	ci right 2.079340e-03	k: 6864	n:3380000
ZNF567   3380000 perm   4503 sec   (751 perm/sec)   p_kst 2.030769e-03   p_cons 1.320414e-03   p_joint 8.579882e-06

Joint ci ratio: 7.156875e-01	ci left: 5.729139e-06	ci right 1.228577e-05	k: 29	n:3390000
Cons ci ratio: 5.856677e-02	ci left: 1.281106e-03	ci right 1.358688e-03	k: 4473	n:3390000
KS ci ratio: 4.718090e-02	ci left: 1.984202e-03	ci right 2.080369e-03	k: 6888	n:3390000
ZNF567   3390000 perm   4528 sec   (749 perm/sec)   p_kst 2.031858e-03   p_cons 1.319469e-03   p_joint 8.554572e-06

Joint ci ratio: 7.156875e-01	ci left: 5.712288e-06	ci right 1.224964e-05	k: 29	n:3400000
Cons ci ratio: 5.849492e-02	ci left: 1.280526e-03	ci right 1.357974e-03	k: 4484	n:3400000
KS ci ratio: 4.711256e-02	ci left: 1.984179e-03	ci right 2.080202e-03	k: 6908	n:3400000
ZNF567   3400000 perm   4554 sec   (747 perm/sec)   p_kst 2.031765e-03   p_cons 1.318824e-03   p_joint 8.529412e-06

Joint ci ratio: 7.156876e-01	ci left: 5.695537e-06	ci right 1.221371e-05	k: 29	n:3410000
Cons ci ratio: 5.842984e-02	ci left: 1.279660e-03	ci right 1.356968e-03	k: 4494	n:3410000
KS ci ratio: 4.701393e-02	ci left: 1.986764e-03	ci right 2.082706e-03	k: 6937	n:3410000
ZNF567   3410000 perm   4579 sec   (745 perm/sec)   p_kst 2.034311e-03   p_cons 1.317889e-03   p_joint 8.504399e-06

Joint ci ratio: 7.156876e-01	ci left: 5.678883e-06	ci right 1.217800e-05	k: 29	n:3420000
Cons ci ratio: 5.837796e-02	ci left: 1.278224e-03	ci right 1.355373e-03	k: 4502	n:3420000
KS ci ratio: 4.695308e-02	ci left: 1.986157e-03	ci right 2.081941e-03	k: 6955	n:3420000
ZNF567   3420000 perm   4604 sec   (743 perm/sec)   p_kst 2.033626e-03   p_cons 1.316374e-03   p_joint 8.479532e-06

Joint ci ratio: 7.156876e-01	ci left: 5.662326e-06	ci right 1.214250e-05	k: 29	n:3430000
Cons ci ratio: 5.830034e-02	ci left: 1.277945e-03	ci right 1.354971e-03	k: 4514	n:3430000
KS ci ratio: 4.688573e-02	ci left: 1.986128e-03	ci right 2.081771e-03	k: 6975	n:3430000
ZNF567   3430000 perm   4630 sec   (741 perm/sec)   p_kst 2.033528e-03   p_cons 1.316035e-03   p_joint 8.454810e-06

Joint ci ratio: 7.156876e-01	ci left: 5.645866e-06	ci right 1.210720e-05	k: 29	n:3440000
Cons ci ratio: 5.817801e-02	ci left: 1.279672e-03	ci right 1.356636e-03	k: 4533	n:3440000
KS ci ratio: 4.682537e-02	ci left: 1.985526e-03	ci right 2.081013e-03	k: 6993	n:3440000
ZNF567   3440000 perm   4655 sec   (739 perm/sec)   p_kst 2.032849e-03   p_cons 1.317733e-03   p_joint 8.430233e-06

Joint ci ratio: 7.156876e-01	ci left: 5.629501e-06	ci right 1.207210e-05	k: 29	n:3450000
Cons ci ratio: 5.801181e-02	ci left: 1.283390e-03	ci right 1.360349e-03	k: 4559	n:3450000
KS ci ratio: 4.677193e-02	ci left: 1.984354e-03	ci right 2.079673e-03	k: 7009	n:3450000
ZNF567   3450000 perm   4681 sec   (737 perm/sec)   p_kst 2.031594e-03   p_cons 1.321449e-03   p_joint 8.405797e-06

Joint ci ratio: 7.156876e-01	ci left: 5.613231e-06	ci right 1.203721e-05	k: 29	n:3460000
Cons ci ratio: 5.791027e-02	ci left: 1.284238e-03	ci right 1.361109e-03	k: 4575	n:3460000
KS ci ratio: 4.666878e-02	ci left: 1.987474e-03	ci right 2.082726e-03	k: 7040	n:3460000
ZNF567   3460000 perm   4710 sec   (735 perm/sec)   p_kst 2.034682e-03   p_cons 1.322254e-03   p_joint 8.381503e-06

Joint ci ratio: 7.156876e-01	ci left: 5.597055e-06	ci right 1.200252e-05	k: 29	n:3470000
Cons ci ratio: 5.784713e-02	ci left: 1.283377e-03	ci right 1.360110e-03	k: 4585	n:3470000
KS ci ratio: 4.659273e-02	ci left: 1.988298e-03	ci right 2.083430e-03	k: 7063	n:3470000
ZNF567   3470000 perm   4736 sec   (733 perm/sec)   p_kst 2.035447e-03   p_cons 1.321326e-03   p_joint 8.357349e-06

Joint ci ratio: 7.156876e-01	ci left: 5.580971e-06	ci right 1.196803e-05	k: 29	n:3480000
Cons ci ratio: 5.779678e-02	ci left: 1.281955e-03	ci right 1.358534e-03	k: 4593	n:3480000
KS ci ratio: 4.653020e-02	ci left: 1.987980e-03	ci right 2.082966e-03	k: 7082	n:3480000
ZNF567   3480000 perm   4762 sec   (731 perm/sec)   p_kst 2.035057e-03   p_cons 1.319828e-03   p_joint 8.333333e-06

Joint ci ratio: 7.156876e-01	ci left: 5.564980e-06	ci right 1.193374e-05	k: 29	n:3490000
Cons ci ratio: 5.771518e-02	ci left: 1.281953e-03	ci right 1.358420e-03	k: 4606	n:3490000
KS ci ratio: 4.647777e-02	ci left: 1.986815e-03	ci right 2.081636e-03	k: 7098	n:3490000
ZNF567   3490000 perm   4788 sec   (729 perm/sec)   p_kst 2.033811e-03   p_cons 1.319771e-03   p_joint 8.309456e-06

Joint ci ratio: 7.156876e-01	ci left: 5.549080e-06	ci right 1.189965e-05	k: 29	n:3500000
Cons ci ratio: 5.764017e-02	ci left: 1.281669e-03	ci right 1.358017e-03	k: 4618	n:3500000
KS ci ratio: 4.640264e-02	ci left: 1.987634e-03	ci right 2.082336e-03	k: 7121	n:3500000
ZNF567   3500000 perm   4813 sec   (727 perm/sec)   p_kst 2.034571e-03   p_cons 1.319429e-03   p_joint 8.285714e-06

Joint ci ratio: 7.156876e-01	ci left: 5.533270e-06	ci right 1.186574e-05	k: 29	n:3510000
Cons ci ratio: 5.759036e-02	ci left: 1.280264e-03	ci right 1.356460e-03	k: 4626	n:3510000
KS ci ratio: 4.634088e-02	ci left: 1.987321e-03	ci right 2.081879e-03	k: 7140	n:3510000
ZNF567   3510000 perm   4839 sec   (725 perm/sec)   p_kst 2.034188e-03   p_cons 1.317949e-03   p_joint 8.262108e-06

Joint ci ratio: 7.156877e-01	ci left: 5.517551e-06	ci right 1.183203e-05	k: 29	n:3520000
Cons ci ratio: 5.752205e-02	ci left: 1.279707e-03	ci right 1.355776e-03	k: 4637	n:3520000
KS ci ratio: 4.627288e-02	ci left: 1.987572e-03	ci right 2.082000e-03	k: 7161	n:3520000
ZNF567   3520000 perm   4865 sec   (724 perm/sec)   p_kst 2.034375e-03   p_cons 1.317330e-03   p_joint 8.238636e-06

Joint ci ratio: 7.156877e-01	ci left: 5.501920e-06	ci right 1.179852e-05	k: 29	n:3530000
Cons ci ratio: 5.745397e-02	ci left: 1.279153e-03	ci right 1.355096e-03	k: 4648	n:3530000
KS ci ratio: 4.622131e-02	ci left: 1.986422e-03	ci right 2.080687e-03	k: 7177	n:3530000
ZNF567   3530000 perm   4891 sec   (722 perm/sec)   p_kst 2.033144e-03   p_cons 1.316714e-03   p_joint 8.215297e-06

Joint ci ratio: 7.156877e-01	ci left: 5.486378e-06	ci right 1.176519e-05	k: 29	n:3540000
Cons ci ratio: 5.740464e-02	ci left: 1.277767e-03	ci right 1.353561e-03	k: 4656	n:3540000
KS ci ratio: 4.616670e-02	ci left: 1.985557e-03	ci right 2.079667e-03	k: 7194	n:3540000
ZNF567   3540000 perm   4917 sec   (720 perm/sec)   p_kst 2.032203e-03   p_cons 1.315254e-03   p_joint 8.192090e-06

Joint ci ratio: 7.156877e-01	ci left: 5.470924e-06	ci right 1.173205e-05	k: 29	n:3550000
Cons ci ratio: 5.733699e-02	ci left: 1.277222e-03	ci right 1.352891e-03	k: 4667	n:3550000
KS ci ratio: 4.608667e-02	ci left: 1.986925e-03	ci right 2.080932e-03	k: 7219	n:3550000
ZNF567   3550000 perm   4943 sec   (718 perm/sec)   p_kst 2.033521e-03   p_cons 1.314648e-03   p_joint 8.169014e-06

Joint ci ratio: 7.040496e-01	ci left: 5.685646e-06	ci right 1.203000e-05	k: 30	n:3560000
Cons ci ratio: 5.723895e-02	ci left: 1.278064e-03	ci right 1.353649e-03	k: 4683	n:3560000
KS ci ratio: 4.601342e-02	ci left: 1.987730e-03	ci right 2.081622e-03	k: 7242	n:3560000
ZNF567   3560000 perm   4969 sec   (716 perm/sec)   p_kst 2.034270e-03   p_cons 1.315449e-03   p_joint 8.426966e-06

Joint ci ratio: 7.040496e-01	ci left: 5.669720e-06	ci right 1.199630e-05	k: 30	n:3570000
Cons ci ratio: 5.715969e-02	ci left: 1.278074e-03	ci right 1.353551e-03	k: 4696	n:3570000
KS ci ratio: 4.598493e-02	ci left: 1.984654e-03	ci right 2.078341e-03	k: 7251	n:3570000
ZNF567   3570000 perm   4995 sec   (715 perm/sec)   p_kst 2.031092e-03   p_cons 1.315406e-03   p_joint 8.403361e-06

Joint ci ratio: 7.040496e-01	ci left: 5.653882e-06	ci right 1.196279e-05	k: 30	n:3580000
Cons ci ratio: 5.708075e-02	ci left: 1.278083e-03	ci right 1.353453e-03	k: 4709	n:3580000
KS ci ratio: 4.589952e-02	ci left: 1.986566e-03	ci right 2.080164e-03	k: 7278	n:3580000
ZNF567   3580000 perm   5022 sec   (713 perm/sec)   p_kst 2.032961e-03   p_cons 1.315363e-03   p_joint 8.379888e-06

Joint ci ratio: 7.040496e-01	ci left: 5.638133e-06	ci right 1.192947e-05	k: 30	n:3590000
Cons ci ratio: 5.700818e-02	ci left: 1.277818e-03	ci right 1.353074e-03	k: 4721	n:3590000
KS ci ratio: 4.585234e-02	ci left: 1.985163e-03	ci right 2.078596e-03	k: 7293	n:3590000
ZNF567   3590000 perm   5048 sec   (711 perm/sec)   p_kst 2.031476e-03   p_cons 1.315042e-03   p_joint 8.356546e-06

Joint ci ratio: 7.040497e-01	ci left: 5.622472e-06	ci right 1.189633e-05	k: 30	n:3600000
Cons ci ratio: 5.691784e-02	ci left: 1.278376e-03	ci right 1.353541e-03	k: 4736	n:3600000
KS ci ratio: 4.577080e-02	ci left: 1.986788e-03	ci right 2.080127e-03	k: 7319	n:3600000
ZNF567   3600000 perm   5075 sec   (709 perm/sec)   p_kst 2.033056e-03   p_cons 1.315556e-03   p_joint 8.333333e-06

Joint ci ratio: 7.040497e-01	ci left: 5.606897e-06	ci right 1.186338e-05	k: 30	n:3610000
Cons ci ratio: 5.682792e-02	ci left: 1.278931e-03	ci right 1.354006e-03	k: 4751	n:3610000
KS ci ratio: 4.570528e-02	ci left: 1.987035e-03	ci right 2.080249e-03	k: 7340	n:3610000
ZNF567   3610000 perm   5101 sec   (708 perm/sec)   p_kst 2.033241e-03   p_cons 1.316066e-03   p_joint 8.310249e-06

Joint ci ratio: 7.040497e-01	ci left: 5.591408e-06	ci right 1.183060e-05	k: 30	n:3620000
Cons ci ratio: 5.676825e-02	ci left: 1.278121e-03	ci right 1.353067e-03	k: 4761	n:3620000
KS ci ratio: 4.561211e-02	ci left: 1.989739e-03	ci right 2.082884e-03	k: 7370	n:3620000
ZNF567   3620000 perm   5128 sec   (706 perm/sec)   p_kst 2.035912e-03   p_cons 1.315193e-03   p_joint 8.287293e-06

Joint ci ratio: 7.040497e-01	ci left: 5.576005e-06	ci right 1.179801e-05	k: 30	n:3630000
Cons ci ratio: 5.666716e-02	ci left: 1.279217e-03	ci right 1.354089e-03	k: 4778	n:3630000
KS ci ratio: 4.555036e-02	ci left: 1.989704e-03	ci right 2.082718e-03	k: 7390	n:3630000
ZNF567   3630000 perm   5155 sec   (704 perm/sec)   p_kst 2.035813e-03   p_cons 1.316253e-03   p_joint 8.264463e-06

Joint ci ratio: 7.040497e-01	ci left: 5.560686e-06	ci right 1.176560e-05	k: 30	n:3640000
Cons ci ratio: 5.661391e-02	ci left: 1.278140e-03	ci right 1.352877e-03	k: 4787	n:3640000
KS ci ratio: 4.548271e-02	ci left: 1.990213e-03	ci right 2.083109e-03	k: 7412	n:3640000
ZNF567   3640000 perm   5182 sec   (702 perm/sec)   p_kst 2.036264e-03   p_cons 1.315110e-03   p_joint 8.241758e-06

Joint ci ratio: 6.929615e-01	ci left: 5.770691e-06	ci right 1.205533e-05	k: 31	n:3650000
Cons ci ratio: 5.656080e-02	ci left: 1.277069e-03	ci right 1.351671e-03	k: 4796	n:3650000
KS ci ratio: 4.540618e-02	ci left: 1.991532e-03	ci right 2.084329e-03	k: 7437	n:3650000
ZNF567   3650000 perm   5209 sec   (701 perm/sec)   p_kst 2.037534e-03   p_cons 1.313973e-03   p_joint 8.493151e-06

Joint ci ratio: 6.929615e-01	ci left: 5.754924e-06	ci right 1.202239e-05	k: 31	n:3660000
Cons ci ratio: 5.644321e-02	ci left: 1.278967e-03	ci right 1.353520e-03	k: 4816	n:3660000
KS ci ratio: 4.533917e-02	ci left: 1.992033e-03	ci right 2.084713e-03	k: 7459	n:3660000
ZNF567   3660000 perm   5236 sec   (699 perm/sec)   p_kst 2.037978e-03   p_cons 1.315847e-03   p_joint 8.469945e-06

Joint ci ratio: 6.929615e-01	ci left: 5.739243e-06	ci right 1.198963e-05	k: 31	n:3670000
Cons ci ratio: 5.636136e-02	ci left: 1.279243e-03	ci right 1.353700e-03	k: 4830	n:3670000
KS ci ratio: 4.529976e-02	ci left: 1.990108e-03	ci right 2.082615e-03	k: 7472	n:3670000
ZNF567   3670000 perm   5264 sec   (697 perm/sec)   p_kst 2.035967e-03   p_cons 1.316076e-03   p_joint 8.446866e-06

Joint ci ratio: 6.823813e-01	ci left: 5.947827e-06	ci right 1.227564e-05	k: 32	n:3680000
Cons ci ratio: 5.631479e-02	ci left: 1.277910e-03	ci right 1.352226e-03	k: 4838	n:3680000
KS ci ratio: 4.523927e-02	ci left: 1.990073e-03	ci right 2.082452e-03	k: 7492	n:3680000
ZNF567   3680000 perm   5291 sec   (696 perm/sec)   p_kst 2.035870e-03   p_cons 1.314674e-03   p_joint 8.695652e-06

Joint ci ratio: 6.722713e-01	ci left: 6.156019e-06	ci right 1.255940e-05	k: 33	n:3690000
Cons ci ratio: 5.622770e-02	ci left: 1.278455e-03	ci right 1.352684e-03	k: 4853	n:3690000
KS ci ratio: 4.519107e-02	ci left: 1.988967e-03	ci right 2.081194e-03	k: 7508	n:3690000
ZNF567   3690000 perm   5317 sec   (694 perm/sec)   p_kst 2.034688e-03   p_cons 1.315176e-03   p_joint 8.943089e-06

Joint ci ratio: 6.722713e-01	ci left: 6.139381e-06	ci right 1.252546e-05	k: 33	n:3700000
Cons ci ratio: 5.615255e-02	ci left: 1.278464e-03	ci right 1.352591e-03	k: 4866	n:3700000
KS ci ratio: 4.511300e-02	ci left: 1.990539e-03	ci right 2.082675e-03	k: 7534	n:3700000
ZNF567   3700000 perm   5345 sec   (692 perm/sec)   p_kst 2.036216e-03   p_cons 1.315135e-03   p_joint 8.918919e-06

Joint ci ratio: 6.722713e-01	ci left: 6.122833e-06	ci right 1.249169e-05	k: 33	n:3710000
Cons ci ratio: 5.607771e-02	ci left: 1.278472e-03	ci right 1.352498e-03	k: 4879	n:3710000
KS ci ratio: 4.502937e-02	ci left: 1.992636e-03	ci right 2.084694e-03	k: 7562	n:3710000
ZNF567   3710000 perm   5372 sec   (691 perm/sec)   p_kst 2.038275e-03   p_cons 1.315094e-03   p_joint 8.894879e-06

Joint ci ratio: 6.722713e-01	ci left: 6.106374e-06	ci right 1.245811e-05	k: 33	n:3720000
Cons ci ratio: 5.602610e-02	ci left: 1.277421e-03	ci right 1.351316e-03	k: 4888	n:3720000
KS ci ratio: 4.496401e-02	ci left: 1.993127e-03	ci right 2.085070e-03	k: 7584	n:3720000
ZNF567   3720000 perm   5399 sec   (689 perm/sec)   p_kst 2.038710e-03   p_cons 1.313978e-03   p_joint 8.870968e-06

Joint ci ratio: 6.722713e-01	ci left: 6.090003e-06	ci right 1.242471e-05	k: 33	n:3730000
Cons ci ratio: 5.597464e-02	ci left: 1.276375e-03	ci right 1.350139e-03	k: 4897	n:3730000
KS ci ratio: 4.492557e-02	ci left: 1.991229e-03	ci right 2.083005e-03	k: 7597	n:3730000
ZNF567   3730000 perm   5426 sec   (687 perm/sec)   p_kst 2.036729e-03   p_cons 1.312869e-03   p_joint 8.847185e-06

Joint ci ratio: 6.722713e-01	ci left: 6.073719e-06	ci right 1.239149e-05	k: 33	n:3740000
Cons ci ratio: 5.586634e-02	ci left: 1.277972e-03	ci right 1.351681e-03	k: 4916	n:3740000
KS ci ratio: 4.488132e-02	ci left: 1.989871e-03	ci right 2.081491e-03	k: 7612	n:3740000
ZNF567   3740000 perm   5454 sec   (686 perm/sec)   p_kst 2.035294e-03   p_cons 1.314439e-03   p_joint 8.823529e-06

Joint ci ratio: 6.722713e-01	ci left: 6.057523e-06	ci right 1.235845e-05	k: 33	n:3750000
Cons ci ratio: 5.577565e-02	ci left: 1.278771e-03	ci right 1.352402e-03	k: 4932	n:3750000
KS ci ratio: 4.481366e-02	ci left: 1.990629e-03	ci right 2.082143e-03	k: 7635	n:3750000
ZNF567   3750000 perm   5481 sec   (684 perm/sec)   p_kst 2.036000e-03   p_cons 1.315200e-03   p_joint 8.800000e-06

Joint ci ratio: 6.722713e-01	ci left: 6.041412e-06	ci right 1.232558e-05	k: 33	n:3760000
Cons ci ratio: 5.569103e-02	ci left: 1.279304e-03	ci right 1.352851e-03	k: 4947	n:3760000
KS ci ratio: 4.477854e-02	ci left: 1.988491e-03	ci right 2.079832e-03	k: 7647	n:3760000
ZNF567   3760000 perm   5508 sec   (683 perm/sec)   p_kst 2.033777e-03   p_cons 1.315691e-03   p_joint 8.776596e-06

Joint ci ratio: 6.722713e-01	ci left: 6.025387e-06	ci right 1.229289e-05	k: 33	n:3770000
Cons ci ratio: 5.563486e-02	ci left: 1.278526e-03	ci right 1.351951e-03	k: 4957	n:3770000
KS ci ratio: 4.471719e-02	ci left: 1.988724e-03	ci right 2.079948e-03	k: 7668	n:3770000
ZNF567   3770000 perm   5536 sec   (681 perm/sec)   p_kst 2.033952e-03   p_cons 1.314854e-03   p_joint 8.753316e-06

Joint ci ratio: 6.722713e-01	ci left: 6.009447e-06	ci right 1.226037e-05	k: 33	n:3780000
Cons ci ratio: 5.556766e-02	ci left: 1.278274e-03	ci right 1.351594e-03	k: 4969	n:3780000
KS ci ratio: 4.465899e-02	ci left: 1.988695e-03	ci right 2.079796e-03	k: 7688	n:3780000
ZNF567   3780000 perm   5567 sec   (679 perm/sec)   p_kst 2.033862e-03   p_cons 1.314550e-03   p_joint 8.730159e-06

Joint ci ratio: 6.722713e-01	ci left: 5.993591e-06	ci right 1.222802e-05	k: 33	n:3790000
Cons ci ratio: 5.551187e-02	ci left: 1.277503e-03	ci right 1.350703e-03	k: 4979	n:3790000
KS ci ratio: 4.461553e-02	ci left: 1.987361e-03	ci right 2.078310e-03	k: 7703	n:3790000
ZNF567   3790000 perm   5599 sec   (677 perm/sec)   p_kst 2.032454e-03   p_cons 1.313720e-03   p_joint 8.707124e-06

Joint ci ratio: 6.722714e-01	ci left: 5.977818e-06	ci right 1.219584e-05	k: 33	n:3800000
Cons ci ratio: 5.541733e-02	ci left: 1.278553e-03	ci right 1.351684e-03	k: 4996	n:3800000
KS ci ratio: 4.454906e-02	ci left: 1.988116e-03	ci right 2.078961e-03	k: 7726	n:3800000
ZNF567   3800000 perm   5629 sec   (675 perm/sec)   p_kst 2.033158e-03   p_cons 1.314737e-03   p_joint 8.684211e-06

Joint ci ratio: 6.722714e-01	ci left: 5.962128e-06	ci right 1.216383e-05	k: 33	n:3810000
Cons ci ratio: 5.536199e-02	ci left: 1.277786e-03	ci right 1.350797e-03	k: 5006	n:3810000
KS ci ratio: 4.445990e-02	ci left: 1.990944e-03	ci right 2.081731e-03	k: 7757	n:3810000
ZNF567   3810000 perm   5657 sec   (674 perm/sec)   p_kst 2.035958e-03   p_cons 1.313911e-03   p_joint 8.661417e-06

Joint ci ratio: 6.722714e-01	ci left: 5.946521e-06	ci right 1.213199e-05	k: 33	n:3820000
Cons ci ratio: 5.527923e-02	ci left: 1.278313e-03	ci right 1.351242e-03	k: 5021	n:3820000
KS ci ratio: 4.442847e-02	ci left: 1.988580e-03	ci right 2.079193e-03	k: 7768	n:3820000
ZNF567   3820000 perm   5685 sec   (672 perm/sec)   p_kst 2.033508e-03   p_cons 1.314398e-03   p_joint 8.638743e-06

Joint ci ratio: 6.722714e-01	ci left: 5.930995e-06	ci right 1.210031e-05	k: 33	n:3830000
Cons ci ratio: 5.522979e-02	ci left: 1.277293e-03	ci right 1.350096e-03	k: 5030	n:3830000
KS ci ratio: 4.437711e-02	ci left: 1.988035e-03	ci right 2.078517e-03	k: 7786	n:3830000
ZNF567   3830000 perm   5712 sec   (671 perm/sec)   p_kst 2.032898e-03   p_cons 1.313316e-03   p_joint 8.616188e-06

Joint ci ratio: 6.722714e-01	ci left: 5.915549e-06	ci right 1.206880e-05	k: 33	n:3840000
Cons ci ratio: 5.512029e-02	ci left: 1.279103e-03	ci right 1.351861e-03	k: 5050	n:3840000
KS ci ratio: 4.432876e-02	ci left: 1.987236e-03	ci right 2.077580e-03	k: 7803	n:3840000
ZNF567   3840000 perm   5740 sec   (669 perm/sec)   p_kst 2.032031e-03   p_cons 1.315104e-03   p_joint 8.593750e-06

Joint ci ratio: 6.722714e-01	ci left: 5.900184e-06	ci right 1.203745e-05	k: 33	n:3850000
Cons ci ratio: 5.504950e-02	ci left: 1.279111e-03	ci right 1.351772e-03	k: 5063	n:3850000
KS ci ratio: 4.428625e-02	ci left: 1.985927e-03	ci right 2.076123e-03	k: 7818	n:3850000
ZNF567   3850000 perm   5768 sec   (667 perm/sec)   p_kst 2.030649e-03   p_cons 1.315065e-03   p_joint 8.571429e-06

Joint ci ratio: 6.722714e-01	ci left: 5.884899e-06	ci right 1.200627e-05	k: 33	n:3860000
Cons ci ratio: 5.496813e-02	ci left: 1.279630e-03	ci right 1.352210e-03	k: 5078	n:3860000
KS ci ratio: 4.423821e-02	ci left: 1.985138e-03	ci right 2.075197e-03	k: 7835	n:3860000
ZNF567   3860000 perm   5796 sec   (666 perm/sec)   p_kst 2.029793e-03   p_cons 1.315544e-03   p_joint 8.549223e-06

Joint ci ratio: 6.722714e-01	ci left: 5.869692e-06	ci right 1.197524e-05	k: 33	n:3870000
Cons ci ratio: 5.490872e-02	ci left: 1.279126e-03	ci right 1.351597e-03	k: 5089	n:3870000
KS ci ratio: 4.418186e-02	ci left: 1.985119e-03	ci right 2.075060e-03	k: 7855	n:3870000
ZNF567   3870000 perm   5825 sec   (664 perm/sec)   p_kst 2.029716e-03   p_cons 1.314987e-03   p_joint 8.527132e-06

Joint ci ratio: 6.722714e-01	ci left: 5.854564e-06	ci right 1.194438e-05	k: 33	n:3880000
Cons ci ratio: 5.480648e-02	ci left: 1.280660e-03	ci right 1.353078e-03	k: 5108	n:3880000
KS ci ratio: 4.411170e-02	ci left: 1.986375e-03	ci right 2.076226e-03	k: 7880	n:3880000
ZNF567   3880000 perm   5858 sec   (662 perm/sec)   p_kst 2.030928e-03   p_cons 1.316495e-03   p_joint 8.505155e-06

Joint ci ratio: 6.722714e-01	ci left: 5.839514e-06	ci right 1.191367e-05	k: 33	n:3890000
Cons ci ratio: 5.474224e-02	ci left: 1.280410e-03	ci right 1.352726e-03	k: 5120	n:3890000
KS ci ratio: 4.407541e-02	ci left: 1.984574e-03	ci right 2.074268e-03	k: 7893	n:3890000
ZNF567   3890000 perm   5891 sec   (660 perm/sec)   p_kst 2.029049e-03   p_cons 1.316195e-03   p_joint 8.483290e-06

Joint ci ratio: 6.722714e-01	ci left: 5.824541e-06	ci right 1.188313e-05	k: 33	n:3900000
Cons ci ratio: 5.467289e-02	ci left: 1.280415e-03	ci right 1.352637e-03	k: 5133	n:3900000
KS ci ratio: 4.402247e-02	ci left: 1.984303e-03	ci right 2.073875e-03	k: 7912	n:3900000
ZNF567   3900000 perm   5924 sec   (658 perm/sec)   p_kst 2.028718e-03   p_cons 1.316154e-03   p_joint 8.461538e-06

Joint ci ratio: 6.722714e-01	ci left: 5.809644e-06	ci right 1.185273e-05	k: 33	n:3910000
Cons ci ratio: 5.456666e-02	ci left: 1.282185e-03	ci right 1.354362e-03	k: 5153	n:3910000
KS ci ratio: 4.396694e-02	ci left: 1.984287e-03	ci right 2.073742e-03	k: 7932	n:3910000
ZNF567   3910000 perm   5956 sec   (656 perm/sec)   p_kst 2.028645e-03   p_cons 1.317903e-03   p_joint 8.439898e-06

Joint ci ratio: 6.722715e-01	ci left: 5.794824e-06	ci right 1.182250e-05	k: 33	n:3920000
Cons ci ratio: 5.450854e-02	ci left: 1.281682e-03	ci right 1.353752e-03	k: 5164	n:3920000
KS ci ratio: 4.390886e-02	ci left: 1.984523e-03	ci right 2.073868e-03	k: 7953	n:3920000
ZNF567   3920000 perm   5989 sec   (655 perm/sec)   p_kst 2.028827e-03   p_cons 1.317347e-03   p_joint 8.418367e-06

Joint ci ratio: 6.722715e-01	ci left: 5.780078e-06	ci right 1.179241e-05	k: 33	n:3930000
Cons ci ratio: 5.445060e-02	ci left: 1.281182e-03	ci right 1.353144e-03	k: 5175	n:3930000
KS ci ratio: 4.385652e-02	ci left: 1.984255e-03	ci right 2.073478e-03	k: 7972	n:3930000
ZNF567   3930000 perm   6021 sec   (653 perm/sec)   p_kst 2.028499e-03   p_cons 1.316794e-03   p_joint 8.396947e-06

Joint ci ratio: 4.526382e-01	ci left: 1.474772e-05	ci right 2.357868e-05	k: 74	n:3940000
Cons ci ratio: 5.436138e-02	ci left: 1.282186e-03	ci right 1.354083e-03	k: 5192	n:3940000
KS ci ratio: 4.375502e-02	ci left: 1.988507e-03	ci right 2.077709e-03	k: 8009	n:3940000
ZNF567   3940000 perm   6054 sec   (651 perm/sec)   p_kst 2.032741e-03   p_cons 1.317766e-03   p_joint 1.878173e-05

Joint ci ratio: 4.526383e-01	ci left: 1.471039e-05	ci right 2.351899e-05	k: 74	n:3950000
Cons ci ratio: 5.429346e-02	ci left: 1.282186e-03	ci right 1.353991e-03	k: 5205	n:3950000
KS ci ratio: 4.370049e-02	ci left: 1.988481e-03	ci right 2.077568e-03	k: 8029	n:3950000
ZNF567   3950000 perm   6086 sec   (649 perm/sec)   p_kst 2.032658e-03   p_cons 1.317722e-03   p_joint 1.873418e-05

Joint ci ratio: 4.526383e-01	ci left: 1.467324e-05	ci right 2.345960e-05	k: 74	n:3960000
Cons ci ratio: 5.425183e-02	ci left: 1.280941e-03	ci right 1.352619e-03	k: 5213	n:3960000
KS ci ratio: 4.365705e-02	ci left: 1.987456e-03	ci right 2.076406e-03	k: 8045	n:3960000
ZNF567   3960000 perm   6117 sec   (647 perm/sec)   p_kst 2.031566e-03   p_cons 1.316414e-03   p_joint 1.868687e-05

Joint ci ratio: 4.526383e-01	ci left: 1.463628e-05	ci right 2.340050e-05	k: 74	n:3970000
Cons ci ratio: 5.419990e-02	ci left: 1.280199e-03	ci right 1.351765e-03	k: 5223	n:3970000
KS ci ratio: 4.359477e-02	ci left: 1.988180e-03	ci right 2.077033e-03	k: 8068	n:3970000
ZNF567   3970000 perm   6146 sec   (646 perm/sec)   p_kst 2.032242e-03   p_cons 1.315617e-03   p_joint 1.863980e-05

Joint ci ratio: 4.526383e-01	ci left: 1.459950e-05	ci right 2.334171e-05	k: 74	n:3980000
Cons ci ratio: 5.414294e-02	ci left: 1.279709e-03	ci right 1.351170e-03	k: 5234	n:3980000
KS ci ratio: 4.355163e-02	ci left: 1.987161e-03	ci right 2.075878e-03	k: 8084	n:3980000
ZNF567   3980000 perm   6175 sec   (645 perm/sec)   p_kst 2.031156e-03   p_cons 1.315075e-03   p_joint 1.859296e-05

Joint ci ratio: 4.526383e-01	ci left: 1.456291e-05	ci right 2.328321e-05	k: 74	n:3990000
Cons ci ratio: 5.403977e-02	ci left: 1.281447e-03	ci right 1.352864e-03	k: 5254	n:3990000
KS ci ratio: 4.350056e-02	ci left: 1.986890e-03	ci right 2.075489e-03	k: 8103	n:3990000
ZNF567   3990000 perm   6204 sec   (643 perm/sec)   p_kst 2.030827e-03   p_cons 1.316792e-03   p_joint 1.854637e-05

Joint ci ratio: 4.526383e-01	ci left: 1.452651e-05	ci right 2.322500e-05	k: 74	n:4000000
Cons ci ratio: 5.397818e-02	ci left: 1.281203e-03	ci right 1.352522e-03	k: 5266	n:4000000
KS ci ratio: 4.343359e-02	ci left: 1.988105e-03	ci right 2.076618e-03	k: 8128	n:4000000
ZNF567   4000000 perm   6234 sec   (642 perm/sec)   p_kst 2.032000e-03   p_cons 1.316500e-03   p_joint 1.850000e-05

Joint ci ratio: 4.496505e-01	ci left: 1.471131e-05	ci right 2.344462e-05	k: 75	n:4010000
Cons ci ratio: 5.391169e-02	ci left: 1.281206e-03	ci right 1.352435e-03	k: 5279	n:4010000
KS ci ratio: 4.337226e-02	ci left: 1.988821e-03	ci right 2.077237e-03	k: 8151	n:4010000
ZNF567   4010000 perm   6266 sec   (640 perm/sec)   p_kst 2.032668e-03   p_cons 1.316459e-03   p_joint 1.870324e-05

Joint ci ratio: 4.467211e-01	ci left: 1.489539e-05	ci right 2.366296e-05	k: 76	n:4020000
Cons ci ratio: 5.383017e-02	ci left: 1.281945e-03	ci right 1.353105e-03	k: 5295	n:4020000
KS ci ratio: 4.331650e-02	ci left: 1.989041e-03	ci right 2.077350e-03	k: 8172	n:4020000
ZNF567   4020000 perm   6299 sec   (638 perm/sec)   p_kst 2.032836e-03   p_cons 1.317164e-03   p_joint 1.890547e-05

Joint ci ratio: 4.438482e-01	ci left: 1.507874e-05	ci right 2.388004e-05	k: 77	n:4030000
Cons ci ratio: 5.371865e-02	ci left: 1.284150e-03	ci right 1.355279e-03	k: 5317	n:4030000
KS ci ratio: 4.327418e-02	ci left: 1.988033e-03	ci right 2.076209e-03	k: 8188	n:4030000
ZNF567   4030000 perm   6331 sec   (637 perm/sec)   p_kst 2.031762e-03   p_cons 1.319355e-03   p_joint 1.910670e-05

Joint ci ratio: 4.438483e-01	ci left: 1.504141e-05	ci right 2.382093e-05	k: 77	n:4040000
Cons ci ratio: 5.367328e-02	ci left: 1.283169e-03	ci right 1.354182e-03	k: 5326	n:4040000
KS ci ratio: 4.321353e-02	ci left: 1.988743e-03	ci right 2.076824e-03	k: 8211	n:4040000
ZNF567   4040000 perm   6362 sec   (635 perm/sec)   p_kst 2.032426e-03   p_cons 1.318317e-03   p_joint 1.905941e-05

Joint ci ratio: 4.438483e-01	ci left: 1.500427e-05	ci right 2.376211e-05	k: 77	n:4050000
Cons ci ratio: 5.360289e-02	ci left: 1.283411e-03	ci right 1.354342e-03	k: 5340	n:4050000
KS ci ratio: 4.317414e-02	ci left: 1.987496e-03	ci right 2.075440e-03	k: 8226	n:4050000
ZNF567   4050000 perm   6391 sec   (634 perm/sec)   p_kst 2.031111e-03   p_cons 1.318519e-03   p_joint 1.901235e-05

Joint ci ratio: 4.438483e-01	ci left: 1.496732e-05	ci right 2.370359e-05	k: 77	n:4060000
Cons ci ratio: 5.352776e-02	ci left: 1.283895e-03	ci right 1.354750e-03	k: 5355	n:4060000
KS ci ratio: 4.313749e-02	ci left: 1.986012e-03	ci right 2.073814e-03	k: 8240	n:4060000
ZNF567   4060000 perm   6423 sec   (632 perm/sec)   p_kst 2.029557e-03   p_cons 1.318966e-03   p_joint 1.896552e-05

Joint ci ratio: 4.410301e-01	ci left: 1.514886e-05	ci right 2.391826e-05	k: 78	n:4070000
Cons ci ratio: 5.344299e-02	ci left: 1.284862e-03	ci right 1.355654e-03	k: 5372	n:4070000
KS ci ratio: 4.310354e-02	ci left: 1.984292e-03	ci right 2.071947e-03	k: 8253	n:4070000
ZNF567   4070000 perm   6457 sec   (630 perm/sec)   p_kst 2.027764e-03   p_cons 1.319902e-03   p_joint 1.916462e-05

Joint ci ratio: 4.410301e-01	ci left: 1.511174e-05	ci right 2.385963e-05	k: 78	n:4080000
Cons ci ratio: 5.337845e-02	ci left: 1.284856e-03	ci right 1.355560e-03	k: 5385	n:4080000
KS ci ratio: 4.304360e-02	ci left: 1.985005e-03	ci right 2.072567e-03	k: 8276	n:4080000
ZNF567   4080000 perm   6491 sec   (629 perm/sec)   p_kst 2.028431e-03   p_cons 1.319853e-03   p_joint 1.911765e-05

Joint ci ratio: 4.410301e-01	ci left: 1.507479e-05	ci right 2.380130e-05	k: 78	n:4090000
Cons ci ratio: 5.329933e-02	ci left: 1.285575e-03	ci right 1.356210e-03	k: 5401	n:4090000
KS ci ratio: 4.299169e-02	ci left: 1.984989e-03	ci right 2.072442e-03	k: 8296	n:4090000
ZNF567   4090000 perm   6525 sec   (627 perm/sec)   p_kst 2.028362e-03   p_cons 1.320538e-03   p_joint 1.907090e-05

Joint ci ratio: 4.410302e-01	ci left: 1.503802e-05	ci right 2.374324e-05	k: 78	n:4100000
Cons ci ratio: 5.321563e-02	ci left: 1.286530e-03	ci right 1.357104e-03	k: 5418	n:4100000
KS ci ratio: 4.295032e-02	ci left: 1.984008e-03	ci right 2.071331e-03	k: 8312	n:4100000
ZNF567   4100000 perm   6559 sec   (625 perm/sec)   p_kst 2.027317e-03   p_cons 1.321463e-03   p_joint 1.902439e-05

Joint ci ratio: 4.410302e-01	ci left: 1.500143e-05	ci right 2.368547e-05	k: 78	n:4110000
Cons ci ratio: 5.313723e-02	ci left: 1.287241e-03	ci right 1.357747e-03	k: 5434	n:4110000
KS ci ratio: 4.292715e-02	ci left: 1.981347e-03	ci right 2.068505e-03	k: 8321	n:4110000
ZNF567   4110000 perm   6593 sec   (623 perm/sec)   p_kst 2.024574e-03   p_cons 1.322141e-03   p_joint 1.897810e-05

Joint ci ratio: 4.410302e-01	ci left: 1.496502e-05	ci right 2.362799e-05	k: 78	n:4120000
Cons ci ratio: 5.308843e-02	ci left: 1.286512e-03	ci right 1.356911e-03	k: 5444	n:4120000
KS ci ratio: 4.287823e-02	ci left: 1.981100e-03	ci right 2.068146e-03	k: 8340	n:4120000
ZNF567   4120000 perm   6628 sec   (622 perm/sec)   p_kst 2.024272e-03   p_cons 1.321359e-03   p_joint 1.893204e-05

Joint ci ratio: 4.410302e-01	ci left: 1.492878e-05	ci right 2.357078e-05	k: 78	n:4130000
Cons ci ratio: 5.303977e-02	ci left: 1.285786e-03	ci right 1.356079e-03	k: 5454	n:4130000
KS ci ratio: 4.281410e-02	ci left: 1.982292e-03	ci right 2.069256e-03	k: 8365	n:4130000
ZNF567   4130000 perm   6662 sec   (620 perm/sec)   p_kst 2.025424e-03   p_cons 1.320581e-03   p_joint 1.888620e-05

Joint ci ratio: 4.410302e-01	ci left: 1.489272e-05	ci right 2.351384e-05	k: 78	n:4140000
Cons ci ratio: 5.294760e-02	ci left: 1.287209e-03	ci right 1.357453e-03	k: 5473	n:4140000
KS ci ratio: 4.275790e-02	ci left: 1.982761e-03	ci right 2.069629e-03	k: 8387	n:4140000
ZNF567   4140000 perm   6697 sec   (618 perm/sec)   p_kst 2.025845e-03   p_cons 1.321981e-03   p_joint 1.884058e-05

Joint ci ratio: 4.410302e-01	ci left: 1.485684e-05	ci right 2.345718e-05	k: 78	n:4150000
Cons ci ratio: 5.289450e-02	ci left: 1.286723e-03	ci right 1.356868e-03	k: 5484	n:4150000
KS ci ratio: 4.272485e-02	ci left: 1.981082e-03	ci right 2.067808e-03	k: 8400	n:4150000
ZNF567   4150000 perm   6727 sec   (617 perm/sec)   p_kst 2.024096e-03   p_cons 1.321446e-03   p_joint 1.879518e-05

Joint ci ratio: 4.382651e-01	ci left: 1.503489e-05	ci right 2.366763e-05	k: 79	n:4160000
Cons ci ratio: 5.283674e-02	ci left: 1.286476e-03	ci right 1.356529e-03	k: 5496	n:4160000
KS ci ratio: 4.268424e-02	ci left: 1.980125e-03	ci right 2.066724e-03	k: 8416	n:4160000
ZNF567   4160000 perm   6757 sec   (616 perm/sec)   p_kst 2.023077e-03   p_cons 1.321154e-03   p_joint 1.899038e-05

Joint ci ratio: 4.382651e-01	ci left: 1.499884e-05	ci right 2.361087e-05	k: 79	n:4170000
Cons ci ratio: 5.276958e-02	ci left: 1.286704e-03	ci right 1.356677e-03	k: 5510	n:4170000
KS ci ratio: 4.263362e-02	ci left: 1.980122e-03	ci right 2.066615e-03	k: 8436	n:4170000
ZNF567   4170000 perm   6788 sec   (614 perm/sec)   p_kst 2.023022e-03   p_cons 1.321343e-03   p_joint 1.894484e-05

Joint ci ratio: 4.382651e-01	ci left: 1.496296e-05	ci right 2.355439e-05	k: 79	n:4180000
Cons ci ratio: 5.271701e-02	ci left: 1.286222e-03	ci right 1.356098e-03	k: 5521	n:4180000
KS ci ratio: 4.256805e-02	ci left: 1.981538e-03	ci right 2.067958e-03	k: 8462	n:4180000
ZNF567   4180000 perm   6818 sec   (613 perm/sec)   p_kst 2.024402e-03   p_cons 1.320813e-03   p_joint 1.889952e-05

Joint ci ratio: 4.382651e-01	ci left: 1.492725e-05	ci right 2.349817e-05	k: 79	n:4190000
Cons ci ratio: 5.266936e-02	ci left: 1.285508e-03	ci right 1.355280e-03	k: 5531	n:4190000
KS ci ratio: 4.252286e-02	ci left: 1.981059e-03	ci right 2.067364e-03	k: 8480	n:4190000
ZNF567   4190000 perm   6847 sec   (612 perm/sec)   p_kst 2.023866e-03   p_cons 1.320048e-03   p_joint 1.885442e-05

Joint ci ratio: 4.382651e-01	ci left: 1.489170e-05	ci right 2.344222e-05	k: 79	n:4200000
Cons ci ratio: 5.259334e-02	ci left: 1.286207e-03	ci right 1.355912e-03	k: 5547	n:4200000
KS ci ratio: 4.249035e-02	ci left: 1.979405e-03	ci right 2.065570e-03	k: 8493	n:4200000
ZNF567   4200000 perm   6877 sec   (611 perm/sec)   p_kst 2.022143e-03   p_cons 1.320714e-03   p_joint 1.880952e-05

Joint ci ratio: 4.382651e-01	ci left: 1.485633e-05	ci right 2.338654e-05	k: 79	n:4210000
Cons ci ratio: 5.252710e-02	ci left: 1.286433e-03	ci right 1.356061e-03	k: 5561	n:4210000
KS ci ratio: 4.241795e-02	ci left: 1.981519e-03	ci right 2.067625e-03	k: 8522	n:4210000
ZNF567   4210000 perm   6908 sec   (609 perm/sec)   p_kst 2.024228e-03   p_cons 1.320903e-03   p_joint 1.876485e-05

Joint ci ratio: 4.382651e-01	ci left: 1.482113e-05	ci right 2.333112e-05	k: 79	n:4220000
Cons ci ratio: 5.248940e-02	ci left: 1.285256e-03	ci right 1.354768e-03	k: 5569	n:4220000
KS ci ratio: 4.235089e-02	ci left: 1.983153e-03	ci right 2.069191e-03	k: 8549	n:4220000
ZNF567   4220000 perm   6939 sec   (608 perm/sec)   p_kst 2.025829e-03   p_cons 1.319668e-03   p_joint 1.872038e-05

Joint ci ratio: 4.382651e-01	ci left: 1.478609e-05	ci right 2.327597e-05	k: 79	n:4230000
Cons ci ratio: 5.240476e-02	ci left: 1.286417e-03	ci right 1.355876e-03	k: 5587	n:4230000
KS ci ratio: 4.229403e-02	ci left: 1.983845e-03	ci right 2.069794e-03	k: 8572	n:4230000
ZNF567   4230000 perm   6969 sec   (607 perm/sec)   p_kst 2.026478e-03   p_cons 1.320804e-03   p_joint 1.867612e-05

Joint ci ratio: 4.382651e-01	ci left: 1.475122e-05	ci right 2.322107e-05	k: 79	n:4240000
Cons ci ratio: 5.235796e-02	ci left: 1.285710e-03	ci right 1.355068e-03	k: 5597	n:4240000
KS ci ratio: 4.224725e-02	ci left: 1.983600e-03	ci right 2.069441e-03	k: 8591	n:4240000
ZNF567   4240000 perm   7002 sec   (606 perm/sec)   p_kst 2.026179e-03   p_cons 1.320047e-03   p_joint 1.863208e-05

Joint ci ratio: 4.382651e-01	ci left: 1.471651e-05	ci right 2.316643e-05	k: 79	n:4250000
Cons ci ratio: 5.231127e-02	ci left: 1.285007e-03	ci right 1.354263e-03	k: 5607	n:4250000
KS ci ratio: 4.217854e-02	ci left: 1.985451e-03	ci right 2.071230e-03	k: 8619	n:4250000
ZNF567   4250000 perm   7034 sec   (604 perm/sec)   p_kst 2.028000e-03   p_cons 1.319294e-03   p_joint 1.858824e-05

Joint ci ratio: 4.382652e-01	ci left: 1.468196e-05	ci right 2.311205e-05	k: 79	n:4260000
Cons ci ratio: 5.226937e-02	ci left: 1.284076e-03	ci right 1.353225e-03	k: 5616	n:4260000
KS ci ratio: 4.213702e-02	ci left: 1.984739e-03	ci right 2.070400e-03	k: 8636	n:4260000
ZNF567   4260000 perm   7065 sec   (603 perm/sec)   p_kst 2.027230e-03   p_cons 1.318310e-03   p_joint 1.854460e-05

Joint ci ratio: 5.384500e-01	ci left: 9.095115e-06	ci right 1.596978e-05	k: 52	n:4270000
Cons ci ratio: 5.221828e-02	ci left: 1.283611e-03	ci right 1.352665e-03	k: 5627	n:4270000
KS ci ratio: 4.209319e-02	ci left: 1.984262e-03	ci right 2.069811e-03	k: 8654	n:4270000
ZNF567   4270000 perm   7096 sec   (602 perm/sec)   p_kst 2.026698e-03   p_cons 1.317799e-03   p_joint 1.217799e-05

Joint ci ratio: 5.384500e-01	ci left: 9.073865e-06	ci right 1.593247e-05	k: 52	n:4280000
Cons ci ratio: 5.213957e-02	ci left: 1.284532e-03	ci right 1.353529e-03	k: 5644	n:4280000
KS ci ratio: 4.203251e-02	ci left: 1.985406e-03	ci right 2.070878e-03	k: 8679	n:4280000
ZNF567   4280000 perm   7127 sec   (601 perm/sec)   p_kst 2.027804e-03   p_cons 1.318692e-03   p_joint 1.214953e-05

Joint ci ratio: 5.384500e-01	ci left: 9.052714e-06	ci right 1.589533e-05	k: 52	n:4290000
Cons ci ratio: 5.209347e-02	ci left: 1.283838e-03	ci right 1.352735e-03	k: 5654	n:4290000
KS ci ratio: 4.198175e-02	ci left: 1.985621e-03	ci right 2.070997e-03	k: 8700	n:4290000
ZNF567   4290000 perm   7158 sec   (599 perm/sec)   p_kst 2.027972e-03   p_cons 1.317949e-03   p_joint 1.212121e-05

Joint ci ratio: 5.384500e-01	ci left: 9.031661e-06	ci right 1.585836e-05	k: 52	n:4300000
Cons ci ratio: 5.203370e-02	ci left: 1.283837e-03	ci right 1.352652e-03	k: 5667	n:4300000
KS ci ratio: 4.193359e-02	ci left: 1.985606e-03	ci right 2.070881e-03	k: 8720	n:4300000
ZNF567   4300000 perm   7189 sec   (598 perm/sec)   p_kst 2.027907e-03   p_cons 1.317907e-03   p_joint 1.209302e-05

Joint ci ratio: 5.384500e-01	ci left: 9.010706e-06	ci right 1.582157e-05	k: 52	n:4310000
Cons ci ratio: 5.196955e-02	ci left: 1.284064e-03	ci right 1.352804e-03	k: 5681	n:4310000
KS ci ratio: 4.187599e-02	ci left: 1.986509e-03	ci right 2.071703e-03	k: 8744	n:4310000
ZNF567   4310000 perm   7221 sec   (597 perm/sec)   p_kst 2.028770e-03   p_cons 1.318097e-03   p_joint 1.206497e-05

Joint ci ratio: 5.384500e-01	ci left: 8.989848e-06	ci right 1.578494e-05	k: 52	n:4320000
Cons ci ratio: 5.190108e-02	ci left: 1.284519e-03	ci right 1.353189e-03	k: 5696	n:4320000
KS ci ratio: 4.181863e-02	ci left: 1.987408e-03	ci right 2.072521e-03	k: 8768	n:4320000
ZNF567   4320000 perm   7254 sec   (595 perm/sec)   p_kst 2.029630e-03   p_cons 1.318519e-03   p_joint 1.203704e-05

Joint ci ratio: 5.384501e-01	ci left: 8.969086e-06	ci right 1.574849e-05	k: 52	n:4330000
Cons ci ratio: 5.183287e-02	ci left: 1.284972e-03	ci right 1.353573e-03	k: 5711	n:4330000
KS ci ratio: 4.175674e-02	ci left: 1.988760e-03	ci right 2.073802e-03	k: 8794	n:4330000
ZNF567   4330000 perm   7290 sec   (594 perm/sec)   p_kst 2.030947e-03   p_cons 1.318938e-03   p_joint 1.200924e-05

Joint ci ratio: 5.384501e-01	ci left: 8.948420e-06	ci right 1.571220e-05	k: 52	n:4340000
Cons ci ratio: 5.176494e-02	ci left: 1.285422e-03	ci right 1.353956e-03	k: 5726	n:4340000
KS ci ratio: 4.170934e-02	ci left: 1.988738e-03	ci right 2.073680e-03	k: 8814	n:4340000
ZNF567   4340000 perm   7325 sec   (592 perm/sec)   p_kst 2.030876e-03   p_cons 1.319355e-03   p_joint 1.198157e-05

Joint ci ratio: 5.384501e-01	ci left: 8.927849e-06	ci right 1.567608e-05	k: 52	n:4350000
Cons ci ratio: 5.171531e-02	ci left: 1.284963e-03	ci right 1.353404e-03	k: 5737	n:4350000
KS ci ratio: 4.164794e-02	ci left: 1.990081e-03	ci right 2.074952e-03	k: 8840	n:4350000
ZNF567   4350000 perm   7361 sec   (591 perm/sec)   p_kst 2.032184e-03   p_cons 1.318851e-03   p_joint 1.195402e-05

Joint ci ratio: 5.384501e-01	ci left: 8.907372e-06	ci right 1.564013e-05	k: 52	n:4360000
Cons ci ratio: 5.163436e-02	ci left: 1.286091e-03	ci right 1.354482e-03	k: 5755	n:4360000
KS ci ratio: 4.160797e-02	ci left: 1.989375e-03	ci right 2.074133e-03	k: 8857	n:4360000
ZNF567   4360000 perm   7392 sec   (590 perm/sec)   p_kst 2.031422e-03   p_cons 1.319954e-03   p_joint 1.192661e-05

Joint ci ratio: 5.977914e-01	ci left: 6.926760e-06	ci right 1.299124e-05	k: 42	n:4370000
Cons ci ratio: 5.156720e-02	ci left: 1.286536e-03	ci right 1.354859e-03	k: 5770	n:4370000
KS ci ratio: 4.156343e-02	ci left: 1.989125e-03	ci right 2.073779e-03	k: 8876	n:4370000
ZNF567   4370000 perm   7424 sec   (589 perm/sec)   p_kst 2.031121e-03   p_cons 1.320366e-03   p_joint 9.610984e-06

Joint ci ratio: 5.977914e-01	ci left: 6.910946e-06	ci right 1.296158e-05	k: 42	n:4380000
Cons ci ratio: 5.150922e-02	ci left: 1.286529e-03	ci right 1.354772e-03	k: 5783	n:4380000
KS ci ratio: 4.151435e-02	ci left: 1.989329e-03	ci right 2.073889e-03	k: 8897	n:4380000
ZNF567   4380000 perm   7456 sec   (587 perm/sec)   p_kst 2.031279e-03   p_cons 1.320320e-03   p_joint 9.589041e-06

Joint ci ratio: 5.977914e-01	ci left: 6.895203e-06	ci right 1.293205e-05	k: 42	n:4390000
Cons ci ratio: 5.143810e-02	ci left: 1.287196e-03	ci right 1.355378e-03	k: 5799	n:4390000
KS ci ratio: 4.146777e-02	ci left: 1.989306e-03	ci right 2.073768e-03	k: 8917	n:4390000
ZNF567   4390000 perm   7489 sec   (586 perm/sec)   p_kst 2.031207e-03   p_cons 1.320957e-03   p_joint 9.567198e-06

Joint ci ratio: 5.977914e-01	ci left: 6.879532e-06	ci right 1.290266e-05	k: 42	n:4400000
Cons ci ratio: 5.139826e-02	ci left: 1.286290e-03	ci right 1.354369e-03	k: 5808	n:4400000
KS ci ratio: 4.141207e-02	ci left: 1.990183e-03	ci right 2.074566e-03	k: 8941	n:4400000
ZNF567   4400000 perm   7521 sec   (585 perm/sec)   p_kst 2.032045e-03   p_cons 1.320000e-03   p_joint 9.545455e-06

Joint ci ratio: 5.977914e-01	ci left: 6.863933e-06	ci right 1.287340e-05	k: 42	n:4410000
Cons ci ratio: 5.134968e-02	ci left: 1.285835e-03	ci right 1.353824e-03	k: 5819	n:4410000
KS ci ratio: 4.138898e-02	ci left: 1.987914e-03	ci right 2.072153e-03	k: 8951	n:4410000
ZNF567   4410000 perm   7554 sec   (584 perm/sec)   p_kst 2.029705e-03   p_cons 1.319501e-03   p_joint 9.523810e-06

Joint ci ratio: 5.977914e-01	ci left: 6.848403e-06	ci right 1.284428e-05	k: 42	n:4420000
Cons ci ratio: 5.130564e-02	ci left: 1.285160e-03	ci right 1.353053e-03	k: 5829	n:4420000
KS ci ratio: 4.133129e-02	ci left: 1.989014e-03	ci right 2.073179e-03	k: 8976	n:4420000
ZNF567   4420000 perm   7591 sec   (582 perm/sec)   p_kst 2.030769e-03   p_cons 1.318778e-03   p_joint 9.502262e-06

Joint ci ratio: 5.977914e-01	ci left: 6.832944e-06	ci right 1.281528e-05	k: 42	n:4430000
Cons ci ratio: 5.125732e-02	ci left: 1.284710e-03	ci right 1.352514e-03	k: 5840	n:4430000
KS ci ratio: 4.127613e-02	ci left: 1.989886e-03	ci right 2.073973e-03	k: 9000	n:4430000
ZNF567   4430000 perm   7628 sec   (581 perm/sec)   p_kst 2.031603e-03   p_cons 1.318284e-03   p_joint 9.480813e-06

Joint ci ratio: 5.977914e-01	ci left: 6.817555e-06	ci right 1.278642e-05	k: 42	n:4440000
Cons ci ratio: 5.121352e-02	ci left: 1.284040e-03	ci right 1.351749e-03	k: 5850	n:4440000
KS ci ratio: 4.124181e-02	ci left: 1.988747e-03	ci right 2.072715e-03	k: 9015	n:4440000
ZNF567   4440000 perm   7664 sec   (579 perm/sec)   p_kst 2.030405e-03   p_cons 1.317568e-03   p_joint 9.459459e-06

Joint ci ratio: 5.909592e-01	ci left: 6.993113e-06	ci right 1.301587e-05	k: 43	n:4450000
Cons ci ratio: 5.116546e-02	ci left: 1.283594e-03	ci right 1.351214e-03	k: 5861	n:4450000
KS ci ratio: 4.119386e-02	ci left: 1.988949e-03	ci right 2.072825e-03	k: 9036	n:4450000
ZNF567   4450000 perm   7699 sec   (578 perm/sec)   p_kst 2.030562e-03   p_cons 1.317079e-03   p_joint 9.662921e-06

Joint ci ratio: 5.843561e-01	ci left: 7.168275e-06	ci right 1.324391e-05	k: 44	n:4460000
Cons ci ratio: 5.107836e-02	ci left: 1.285143e-03	ci right 1.352726e-03	k: 5881	n:4460000
KS ci ratio: 4.114380e-02	ci left: 1.989371e-03	ci right 2.073161e-03	k: 9058	n:4460000
ZNF567   4460000 perm   7737 sec   (576 perm/sec)   p_kst 2.030942e-03   p_cons 1.318610e-03   p_joint 9.865471e-06

Joint ci ratio: 5.843561e-01	ci left: 7.152239e-06	ci right 1.321428e-05	k: 44	n:4470000
Cons ci ratio: 5.100468e-02	ci left: 1.286023e-03	ci right 1.353552e-03	k: 5898	n:4470000
KS ci ratio: 4.109846e-02	ci left: 1.989349e-03	ci right 2.073043e-03	k: 9078	n:4470000
ZNF567   4470000 perm   7774 sec   (575 perm/sec)   p_kst 2.030872e-03   p_cons 1.319463e-03   p_joint 9.843400e-06

Joint ci ratio: 5.843561e-01	ci left: 7.136274e-06	ci right 1.318479e-05	k: 44	n:4480000
Cons ci ratio: 5.094858e-02	ci left: 1.286017e-03	ci right 1.353469e-03	k: 5911	n:4480000
KS ci ratio: 4.106005e-02	ci left: 1.988664e-03	ci right 2.072249e-03	k: 9095	n:4480000
ZNF567   4480000 perm   7811 sec   (574 perm/sec)   p_kst 2.030134e-03   p_cons 1.319420e-03   p_joint 9.821429e-06

Joint ci ratio: 5.843561e-01	ci left: 7.120380e-06	ci right 1.315542e-05	k: 44	n:4490000
Cons ci ratio: 5.090556e-02	ci left: 1.285352e-03	ci right 1.352710e-03	k: 5921	n:4490000
KS ci ratio: 4.100822e-02	ci left: 1.989305e-03	ci right 2.072809e-03	k: 9118	n:4490000
ZNF567   4490000 perm   7849 sec   (572 perm/sec)   p_kst 2.030735e-03   p_cons 1.318708e-03   p_joint 9.799555e-06

Joint ci ratio: 5.843561e-01	ci left: 7.104557e-06	ci right 1.312619e-05	k: 44	n:4500000
Cons ci ratio: 5.084120e-02	ci left: 1.285786e-03	ci right 1.353080e-03	k: 5936	n:4500000
KS ci ratio: 4.097007e-02	ci left: 1.988623e-03	ci right 2.072019e-03	k: 9135	n:4500000
ZNF567   4500000 perm   7887 sec   (571 perm/sec)   p_kst 2.030000e-03   p_cons 1.319111e-03   p_joint 9.777778e-06

Joint ci ratio: 5.779695e-01	ci left: 7.277905e-06	ci right 1.335110e-05	k: 45	n:4510000
Cons ci ratio: 5.078991e-02	ci left: 1.285562e-03	ci right 1.352774e-03	k: 5948	n:4510000
KS ci ratio: 4.092754e-02	ci left: 1.988384e-03	ci right 2.071681e-03	k: 9154	n:4510000
ZNF567   4510000 perm   7924 sec   (569 perm/sec)   p_kst 2.029712e-03   p_cons 1.318847e-03   p_joint 9.977827e-06

Joint ci ratio: 5.779695e-01	ci left: 7.261803e-06	ci right 1.332156e-05	k: 45	n:4520000
Cons ci ratio: 5.075582e-02	ci left: 1.284466e-03	ci right 1.351574e-03	k: 5956	n:4520000
KS ci ratio: 4.088514e-02	ci left: 1.988145e-03	ci right 2.071344e-03	k: 9173	n:4520000
ZNF567   4520000 perm   7961 sec   (568 perm/sec)   p_kst 2.029425e-03   p_cons 1.317699e-03   p_joint 9.955752e-06

Joint ci ratio: 5.779695e-01	ci left: 7.245772e-06	ci right 1.329215e-05	k: 45	n:4530000
Cons ci ratio: 5.067928e-02	ci left: 1.285553e-03	ci right 1.352614e-03	k: 5974	n:4530000
KS ci ratio: 4.082730e-02	ci left: 1.989437e-03	ci right 2.072570e-03	k: 9199	n:4530000
ZNF567   4530000 perm   7993 sec   (567 perm/sec)   p_kst 2.030684e-03   p_cons 1.318764e-03   p_joint 9.933775e-06

Joint ci ratio: 5.717877e-01	ci left: 7.418023e-06	ci right 1.351486e-05	k: 46	n:4540000
Cons ci ratio: 5.063271e-02	ci left: 1.285114e-03	ci right 1.352089e-03	k: 5985	n:4540000
KS ci ratio: 4.078521e-02	ci left: 1.989198e-03	ci right 2.072232e-03	k: 9218	n:4540000
ZNF567   4540000 perm   8027 sec   (566 perm/sec)   p_kst 2.030396e-03   p_cons 1.318282e-03   p_joint 1.013216e-05

Joint ci ratio: 5.717878e-01	ci left: 7.401719e-06	ci right 1.348515e-05	k: 46	n:4550000
Cons ci ratio: 5.059471e-02	ci left: 1.284242e-03	ci right 1.351120e-03	k: 5994	n:4550000
KS ci ratio: 4.073663e-02	ci left: 1.989612e-03	ci right 2.072563e-03	k: 9240	n:4550000
ZNF567   4550000 perm   8059 sec   (565 perm/sec)   p_kst 2.030769e-03   p_cons 1.317363e-03   p_joint 1.010989e-05

Joint ci ratio: 5.717878e-01	ci left: 7.385488e-06	ci right 1.345558e-05	k: 46	n:4560000
Cons ci ratio: 5.055258e-02	ci left: 1.283591e-03	ci right 1.350378e-03	k: 6004	n:4560000
KS ci ratio: 4.069922e-02	ci left: 1.988939e-03	ci right 2.071783e-03	k: 9257	n:4560000
ZNF567   4560000 perm   8093 sec   (563 perm/sec)   p_kst 2.030044e-03   p_cons 1.316667e-03   p_joint 1.008772e-05

Joint ci ratio: 5.717878e-01	ci left: 7.369327e-06	ci right 1.342614e-05	k: 46	n:4570000
Cons ci ratio: 5.048536e-02	ci left: 1.284240e-03	ci right 1.350968e-03	k: 6020	n:4570000
KS ci ratio: 4.067071e-02	ci left: 1.987402e-03	ci right 2.070124e-03	k: 9270	n:4570000
ZNF567   4570000 perm   8131 sec   (562 perm/sec)   p_kst 2.028446e-03   p_cons 1.317287e-03   p_joint 1.006565e-05

Joint ci ratio: 5.717878e-01	ci left: 7.353236e-06	ci right 1.339682e-05	k: 46	n:4580000
Cons ci ratio: 5.044350e-02	ci left: 1.283591e-03	ci right 1.350229e-03	k: 6030	n:4580000
KS ci ratio: 4.062253e-02	ci left: 1.987817e-03	ci right 2.070456e-03	k: 9292	n:4580000
ZNF567   4580000 perm   8169 sec   (561 perm/sec)   p_kst 2.028821e-03   p_cons 1.316594e-03   p_joint 1.004367e-05

Joint ci ratio: 5.717878e-01	ci left: 7.337216e-06	ci right 1.336764e-05	k: 46	n:4590000
Cons ci ratio: 5.038922e-02	ci left: 1.283591e-03	ci right 1.350156e-03	k: 6043	n:4590000
KS ci ratio: 4.058544e-02	ci left: 1.987153e-03	ci right 2.069687e-03	k: 9309	n:4590000
ZNF567   4590000 perm   8207 sec   (559 perm/sec)   p_kst 2.028105e-03   p_cons 1.316558e-03   p_joint 1.002179e-05

Joint ci ratio: 5.717878e-01	ci left: 7.321266e-06	ci right 1.333858e-05	k: 46	n:4600000
Cons ci ratio: 5.032264e-02	ci left: 1.284236e-03	ci right 1.350743e-03	k: 6059	n:4600000
KS ci ratio: 4.054410e-02	ci left: 1.986921e-03	ci right 2.069360e-03	k: 9328	n:4600000
ZNF567   4600000 perm   8245 sec   (558 perm/sec)   p_kst 2.027826e-03   p_cons 1.317174e-03   p_joint 1.000000e-05

Joint ci ratio: 5.658003e-01	ci left: 7.491079e-06	ci right 1.355747e-05	k: 47	n:4610000
Cons ci ratio: 5.026461e-02	ci left: 1.284448e-03	ci right 1.350888e-03	k: 6073	n:4610000
KS ci ratio: 4.050505e-02	ci left: 1.986476e-03	ci right 2.068815e-03	k: 9346	n:4610000
ZNF567   4610000 perm   8282 sec   (557 perm/sec)   p_kst 2.027332e-03   p_cons 1.317354e-03   p_joint 1.019523e-05

Joint ci ratio: 5.658003e-01	ci left: 7.474865e-06	ci right 1.352812e-05	k: 47	n:4620000
Cons ci ratio: 5.021091e-02	ci left: 1.284447e-03	ci right 1.350813e-03	k: 6086	n:4620000
KS ci ratio: 4.047478e-02	ci left: 1.985176e-03	ci right 2.067398e-03	k: 9360	n:4620000
ZNF567   4620000 perm   8316 sec   (556 perm/sec)   p_kst 2.025974e-03   p_cons 1.317316e-03   p_joint 1.017316e-05

Joint ci ratio: 5.658003e-01	ci left: 7.458720e-06	ci right 1.349891e-05	k: 47	n:4630000
Cons ci ratio: 5.018210e-02	ci left: 1.283165e-03	ci right 1.349426e-03	k: 6093	n:4630000
KS ci ratio: 4.043809e-02	ci left: 1.984523e-03	ci right 2.066642e-03	k: 9377	n:4630000
ZNF567   4630000 perm   8351 sec   (554 perm/sec)   p_kst 2.025270e-03   p_cons 1.315983e-03   p_joint 1.015119e-05

Joint ci ratio: 5.658003e-01	ci left: 7.442645e-06	ci right 1.346981e-05	k: 47	n:4640000
Cons ci ratio: 5.012044e-02	ci left: 1.283592e-03	ci right 1.349791e-03	k: 6108	n:4640000
KS ci ratio: 4.038858e-02	ci left: 1.985153e-03	ci right 2.067195e-03	k: 9400	n:4640000
ZNF567   4640000 perm   8390 sec   (553 perm/sec)   p_kst 2.025862e-03   p_cons 1.316379e-03   p_joint 1.012931e-05

Joint ci ratio: 5.658003e-01	ci left: 7.426640e-06	ci right 1.344085e-05	k: 47	n:4650000
Cons ci ratio: 5.005083e-02	ci left: 1.284442e-03	ci right 1.350590e-03	k: 6125	n:4650000
KS ci ratio: 4.035642e-02	ci left: 1.984077e-03	ci right 2.066007e-03	k: 9415	n:4650000
ZNF567   4650000 perm   8428 sec   (552 perm/sec)   p_kst 2.024731e-03   p_cons 1.317204e-03   p_joint 1.010753e-05

Joint ci ratio: 5.658003e-01	ci left: 7.410703e-06	ci right 1.341200e-05	k: 47	n:4660000
Cons ci ratio: 5.000188e-02	ci left: 1.284229e-03	ci right 1.350299e-03	k: 6137	n:4660000
KS ci ratio: 4.032220e-02	ci left: 1.983218e-03	ci right 2.065042e-03	k: 9431	n:4660000
ZNF567   4660000 perm   8467 sec   (550 perm/sec)   p_kst 2.023820e-03   p_cons 1.316953e-03   p_joint 1.008584e-05

Joint ci ratio: 5.658003e-01	ci left: 7.394834e-06	ci right 1.338328e-05	k: 47	n:4670000
Cons ci ratio: 4.996529e-02	ci left: 1.283382e-03	ci right 1.349359e-03	k: 6146	n:4670000
KS ci ratio: 4.027098e-02	ci left: 1.984059e-03	ci right 2.065811e-03	k: 9455	n:4670000
ZNF567   4670000 perm   8506 sec   (549 perm/sec)   p_kst 2.024625e-03   p_cons 1.316060e-03   p_joint 1.006424e-05

Joint ci ratio: 5.658003e-01	ci left: 7.379033e-06	ci right 1.335469e-05	k: 47	n:4680000
Cons ci ratio: 4.990037e-02	ci left: 1.284016e-03	ci right 1.349937e-03	k: 6162	n:4680000
KS ci ratio: 4.021570e-02	ci left: 1.985319e-03	ci right 2.067008e-03	k: 9481	n:4680000
ZNF567   4680000 perm   8544 sec   (548 perm/sec)   p_kst 2.025855e-03   p_cons 1.316667e-03   p_joint 1.004274e-05

Joint ci ratio: 5.658003e-01	ci left: 7.363299e-06	ci right 1.332621e-05	k: 47	n:4690000
Cons ci ratio: 4.984783e-02	ci left: 1.284015e-03	ci right 1.349865e-03	k: 6175	n:4690000
KS ci ratio: 4.017124e-02	ci left: 1.985519e-03	ci right 2.067124e-03	k: 9502	n:4690000
ZNF567   4690000 perm   8581 sec   (547 perm/sec)   p_kst 2.026013e-03   p_cons 1.316631e-03   p_joint 1.002132e-05

Joint ci ratio: 5.658003e-01	ci left: 7.347633e-06	ci right 1.329786e-05	k: 47	n:4700000
Cons ci ratio: 4.981157e-02	ci left: 1.283174e-03	ci right 1.348932e-03	k: 6184	n:4700000
KS ci ratio: 4.013748e-02	ci left: 1.984664e-03	ci right 2.066164e-03	k: 9518	n:4700000
ZNF567   4700000 perm   8619 sec   (545 perm/sec)   p_kst 2.025106e-03   p_cons 1.315745e-03   p_joint 1.000000e-05

Joint ci ratio: 5.658003e-01	ci left: 7.332033e-06	ci right 1.326962e-05	k: 47	n:4710000
Cons ci ratio: 4.978344e-02	ci left: 1.281917e-03	ci right 1.347573e-03	k: 6191	n:4710000
KS ci ratio: 4.009960e-02	ci left: 1.984234e-03	ci right 2.065637e-03	k: 9536	n:4710000
ZNF567   4710000 perm   8658 sec   (544 perm/sec)   p_kst 2.024628e-03   p_cons 1.314437e-03   p_joint 9.978769e-06

Joint ci ratio: 5.599970e-01	ci left: 7.498189e-06	ci right 1.348325e-05	k: 48	n:4720000
Cons ci ratio: 4.972725e-02	ci left: 1.282131e-03	ci right 1.347721e-03	k: 6205	n:4720000
KS ci ratio: 4.004502e-02	ci left: 1.985483e-03	ci right 2.066824e-03	k: 9562	n:4720000
ZNF567   4720000 perm   8697 sec   (543 perm/sec)   p_kst 2.025847e-03   p_cons 1.314619e-03   p_joint 1.016949e-05

Joint ci ratio: 5.599970e-01	ci left: 7.482337e-06	ci right 1.345474e-05	k: 48	n:4730000
Cons ci ratio: 4.966326e-02	ci left: 1.282761e-03	ci right 1.348296e-03	k: 6221	n:4730000
KS ci ratio: 3.998649e-02	ci left: 1.987146e-03	ci right 2.068434e-03	k: 9590	n:4730000
ZNF567   4730000 perm   8735 sec   (542 perm/sec)   p_kst 2.027484e-03   p_cons 1.315222e-03   p_joint 1.014799e-05

Joint ci ratio: 5.599970e-01	ci left: 7.466552e-06	ci right 1.342636e-05	k: 48	n:4740000
Cons ci ratio: 4.959951e-02	ci left: 1.283388e-03	ci right 1.348869e-03	k: 6237	n:4740000
KS ci ratio: 3.994070e-02	ci left: 1.987549e-03	ci right 2.068758e-03	k: 9612	n:4740000
ZNF567   4740000 perm   8771 sec   (540 perm/sec)   p_kst 2.027848e-03   p_cons 1.315823e-03   p_joint 1.012658e-05

Joint ci ratio: 5.599971e-01	ci left: 7.450832e-06	ci right 1.339809e-05	k: 48	n:4750000
Cons ci ratio: 4.953997e-02	ci left: 1.283805e-03	ci right 1.349226e-03	k: 6252	n:4750000
KS ci ratio: 3.988678e-02	ci left: 1.988784e-03	ci right 2.069931e-03	k: 9638	n:4750000
ZNF567   4750000 perm   8805 sec   (539 perm/sec)   p_kst 2.029053e-03   p_cons 1.316211e-03   p_joint 1.010526e-05

Joint ci ratio: 5.599971e-01	ci left: 7.435179e-06	ci right 1.336994e-05	k: 48	n:4760000
Cons ci ratio: 4.948460e-02	ci left: 1.284013e-03	ci right 1.349369e-03	k: 6266	n:4760000
KS ci ratio: 3.985373e-02	ci left: 1.987933e-03	ci right 2.068977e-03	k: 9654	n:4760000
ZNF567   4760000 perm   8839 sec   (538 perm/sec)   p_kst 2.028151e-03   p_cons 1.316387e-03   p_joint 1.008403e-05

Joint ci ratio: 5.599971e-01	ci left: 7.419592e-06	ci right 1.334191e-05	k: 48	n:4770000
Cons ci ratio: 4.942942e-02	ci left: 1.284220e-03	ci right 1.349512e-03	k: 6280	n:4770000
KS ci ratio: 3.980427e-02	ci left: 1.988747e-03	ci right 2.069721e-03	k: 9678	n:4770000
ZNF567   4770000 perm   8877 sec   (537 perm/sec)   p_kst 2.028931e-03   p_cons 1.316562e-03   p_joint 1.006289e-05

Joint ci ratio: 5.599971e-01	ci left: 7.404070e-06	ci right 1.331400e-05	k: 48	n:4780000
Cons ci ratio: 4.937835e-02	ci left: 1.284219e-03	ci right 1.349442e-03	k: 6293	n:4780000
KS ci ratio: 3.975911e-02	ci left: 1.989143e-03	ci right 2.070039e-03	k: 9700	n:4780000
ZNF567   4780000 perm   8917 sec   (536 perm/sec)   p_kst 2.029289e-03   p_cons 1.316527e-03   p_joint 1.004184e-05

Joint ci ratio: 5.599971e-01	ci left: 7.388612e-06	ci right 1.328621e-05	k: 48	n:4790000
Cons ci ratio: 4.933918e-02	ci left: 1.283600e-03	ci right 1.348738e-03	k: 6303	n:4790000
KS ci ratio: 3.972023e-02	ci left: 1.988918e-03	ci right 2.069724e-03	k: 9719	n:4790000
ZNF567   4790000 perm   8957 sec   (535 perm/sec)   p_kst 2.029019e-03   p_cons 1.315866e-03   p_joint 1.002088e-05

Joint ci ratio: 5.599971e-01	ci left: 7.373219e-06	ci right 1.325853e-05	k: 48	n:4800000
Cons ci ratio: 4.930402e-02	ci left: 1.282778e-03	ci right 1.347826e-03	k: 6312	n:4800000
KS ci ratio: 3.968148e-02	ci left: 1.988693e-03	ci right 2.069409e-03	k: 9738	n:4800000
ZNF567   4800000 perm   8998 sec   (533 perm/sec)   p_kst 2.028750e-03   p_cons 1.315000e-03   p_joint 1.000000e-05

Joint ci ratio: 5.599971e-01	ci left: 7.357891e-06	ci right 1.323096e-05	k: 48	n:4810000
Cons ci ratio: 4.924165e-02	ci left: 1.283396e-03	ci right 1.348392e-03	k: 6328	n:4810000
KS ci ratio: 3.964690e-02	ci left: 1.988058e-03	ci right 2.068676e-03	k: 9755	n:4810000
ZNF567   4810000 perm   9037 sec   (532 perm/sec)   p_kst 2.028067e-03   p_cons 1.315593e-03   p_joint 9.979210e-06

Joint ci ratio: 5.599971e-01	ci left: 7.342625e-06	ci right 1.320351e-05	k: 48	n:4820000
Cons ci ratio: 4.917951e-02	ci left: 1.284012e-03	ci right 1.348954e-03	k: 6344	n:4820000
KS ci ratio: 3.961039e-02	ci left: 1.987631e-03	ci right 2.068156e-03	k: 9773	n:4820000
ZNF567   4820000 perm   9076 sec   (531 perm/sec)   p_kst 2.027593e-03   p_cons 1.316183e-03   p_joint 9.958506e-06

Joint ci ratio: 5.599971e-01	ci left: 7.327423e-06	ci right 1.317618e-05	k: 48	n:4830000
Cons ci ratio: 4.913694e-02	ci left: 1.283603e-03	ci right 1.348467e-03	k: 6355	n:4830000
KS ci ratio: 3.956790e-02	ci left: 1.987820e-03	ci right 2.068265e-03	k: 9794	n:4830000
ZNF567   4830000 perm   9113 sec   (530 perm/sec)   p_kst 2.027743e-03   p_cons 1.315735e-03   p_joint 9.937888e-06

Joint ci ratio: 5.599971e-01	ci left: 7.312284e-06	ci right 1.314895e-05	k: 48	n:4840000
Cons ci ratio: 4.908291e-02	ci left: 1.283808e-03	ci right 1.348609e-03	k: 6369	n:4840000
KS ci ratio: 3.952757e-02	ci left: 1.987805e-03	ci right 2.068165e-03	k: 9814	n:4840000
ZNF567   4840000 perm   9148 sec   (529 perm/sec)   p_kst 2.027686e-03   p_cons 1.315909e-03   p_joint 9.917355e-06

Joint ci ratio: 5.599971e-01	ci left: 7.297207e-06	ci right 1.312184e-05	k: 48	n:4850000
Cons ci ratio: 4.902522e-02	ci left: 1.284216e-03	ci right 1.348959e-03	k: 6384	n:4850000
KS ci ratio: 3.949138e-02	ci left: 1.987381e-03	ci right 2.067649e-03	k: 9832	n:4850000
ZNF567   4850000 perm   9183 sec   (528 perm/sec)   p_kst 2.027216e-03   p_cons 1.316289e-03   p_joint 9.896907e-06

Joint ci ratio: 5.599971e-01	ci left: 7.282192e-06	ci right 1.309484e-05	k: 48	n:4860000
Cons ci ratio: 4.898689e-02	ci left: 1.283606e-03	ci right 1.348266e-03	k: 6394	n:4860000
KS ci ratio: 3.944526e-02	ci left: 1.987977e-03	ci right 2.068173e-03	k: 9855	n:4860000
ZNF567   4860000 perm   9218 sec   (527 perm/sec)   p_kst 2.027778e-03   p_cons 1.315638e-03   p_joint 9.876543e-06

Joint ci ratio: 5.599971e-01	ci left: 7.267239e-06	ci right 1.306795e-05	k: 48	n:4870000
Cons ci ratio: 4.893335e-02	ci left: 1.283810e-03	ci right 1.348408e-03	k: 6408	n:4870000
KS ci ratio: 3.940530e-02	ci left: 1.987962e-03	ci right 2.068074e-03	k: 9875	n:4870000
ZNF567   4870000 perm   9253 sec   (526 perm/sec)   p_kst 2.027721e-03   p_cons 1.315811e-03   p_joint 9.856263e-06

Joint ci ratio: 5.599971e-01	ci left: 7.252347e-06	ci right 1.304118e-05	k: 48	n:4880000
Cons ci ratio: 4.889142e-02	ci left: 1.283406e-03	ci right 1.347926e-03	k: 6419	n:4880000
KS ci ratio: 3.936945e-02	ci left: 1.987540e-03	ci right 2.067561e-03	k: 9893	n:4880000
ZNF567   4880000 perm   9289 sec   (525 perm/sec)   p_kst 2.027254e-03   p_cons 1.315369e-03   p_joint 9.836066e-06

Joint ci ratio: 5.599971e-01	ci left: 7.237516e-06	ci right 1.301451e-05	k: 48	n:4890000
Cons ci ratio: 4.883060e-02	ci left: 1.284013e-03	ci right 1.348482e-03	k: 6435	n:4890000
KS ci ratio: 3.933966e-02	ci left: 1.986513e-03	ci right 2.066430e-03	k: 9908	n:4890000
ZNF567   4890000 perm   9331 sec   (524 perm/sec)   p_kst 2.026176e-03   p_cons 1.315951e-03   p_joint 9.815951e-06

Joint ci ratio: 5.543688e-01	ci left: 7.398064e-06	ci right 1.322051e-05	k: 49	n:4900000
Cons ci ratio: 4.876243e-02	ci left: 1.285021e-03	ci right 1.349448e-03	k: 6453	n:4900000
KS ci ratio: 3.930399e-02	ci left: 1.986096e-03	ci right 2.065923e-03	k: 9926	n:4900000
ZNF567   4900000 perm   9371 sec   (523 perm/sec)   p_kst 2.025714e-03   p_cons 1.316939e-03   p_joint 1.000000e-05

Joint ci ratio: 4.021796e-01	ci left: 1.547081e-05	ci right 2.342810e-05	k: 94	n:4910000
Cons ci ratio: 4.870962e-02	ci left: 1.285221e-03	ci right 1.349586e-03	k: 6467	n:4910000
KS ci ratio: 3.926248e-02	ci left: 1.986286e-03	ci right 2.066034e-03	k: 9947	n:4910000
ZNF567   4910000 perm   9412 sec   (522 perm/sec)   p_kst 2.025866e-03   p_cons 1.317108e-03   p_joint 1.914460e-05

Joint ci ratio: 4.021796e-01	ci left: 1.543937e-05	ci right 2.338048e-05	k: 94	n:4920000
Cons ci ratio: 4.866451e-02	ci left: 1.285018e-03	ci right 1.349311e-03	k: 6479	n:4920000
KS ci ratio: 3.922504e-02	ci left: 1.986073e-03	ci right 2.065735e-03	k: 9966	n:4920000
ZNF567   4920000 perm   9452 sec   (521 perm/sec)   p_kst 2.025610e-03   p_cons 1.316870e-03   p_joint 1.910569e-05

Joint ci ratio: 4.021796e-01	ci left: 1.540805e-05	ci right 2.333305e-05	k: 94	n:4930000
Cons ci ratio: 4.862327e-02	ci left: 1.284615e-03	ci right 1.348833e-03	k: 6490	n:4930000
KS ci ratio: 3.916611e-02	ci left: 1.988070e-03	ci right 2.067689e-03	k: 9996	n:4930000
ZNF567   4930000 perm   9488 sec   (520 perm/sec)   p_kst 2.027586e-03   p_cons 1.316430e-03   p_joint 1.906694e-05

Joint ci ratio: 4.021796e-01	ci left: 1.537686e-05	ci right 2.328582e-05	k: 94	n:4940000
Cons ci ratio: 4.860459e-02	ci left: 1.283015e-03	ci right 1.347127e-03	k: 6495	n:4940000
KS ci ratio: 3.912503e-02	ci left: 1.988255e-03	ci right 2.067796e-03	k: 10017	n:4940000
ZNF567   4940000 perm   9524 sec   (519 perm/sec)   p_kst 2.027733e-03   p_cons 1.314777e-03   p_joint 1.902834e-05

Joint ci ratio: 4.382657e-01	ci left: 1.263538e-05	ci right 1.989038e-05	k: 79	n:4950000
Cons ci ratio: 4.856724e-02	ci left: 1.282418e-03	ci right 1.346450e-03	k: 6505	n:4950000
KS ci ratio: 3.908409e-02	ci left: 1.988439e-03	ci right 2.067903e-03	k: 10038	n:4950000
ZNF567   4950000 perm   9560 sec   (518 perm/sec)   p_kst 2.027879e-03   p_cons 1.314141e-03   p_joint 1.595960e-05

Joint ci ratio: 4.382657e-01	ci left: 1.260991e-05	ci right 1.985028e-05	k: 79	n:4960000
Cons ci ratio: 4.850761e-02	ci left: 1.283020e-03	ci right 1.347000e-03	k: 6521	n:4960000
KS ci ratio: 3.903161e-02	ci left: 1.989821e-03	ci right 2.069230e-03	k: 10065	n:4960000
ZNF567   4960000 perm   9596 sec   (517 perm/sec)   p_kst 2.029234e-03   p_cons 1.314718e-03   p_joint 1.592742e-05

Joint ci ratio: 4.382658e-01	ci left: 1.258454e-05	ci right 1.981034e-05	k: 79	n:4970000
Cons ci ratio: 4.844079e-02	ci left: 1.284016e-03	ci right 1.347956e-03	k: 6539	n:4970000
KS ci ratio: 3.900646e-02	ci left: 1.988407e-03	ci right 2.067708e-03	k: 10078	n:4970000
ZNF567   4970000 perm   9636 sec   (516 perm/sec)   p_kst 2.027767e-03   p_cons 1.315694e-03   p_joint 1.589537e-05

Joint ci ratio: 4.382658e-01	ci left: 1.255927e-05	ci right 1.977056e-05	k: 79	n:4980000
Cons ci ratio: 4.838163e-02	ci left: 1.284612e-03	ci right 1.348501e-03	k: 6555	n:4980000
KS ci ratio: 3.895429e-02	ci left: 1.989783e-03	ci right 2.069031e-03	k: 10105	n:4980000
ZNF567   4980000 perm   9677 sec   (515 perm/sec)   p_kst 2.029116e-03   p_cons 1.316265e-03   p_joint 1.586345e-05

Joint ci ratio: 4.382658e-01	ci left: 1.253410e-05	ci right 1.973094e-05	k: 79	n:4990000
Cons ci ratio: 4.830797e-02	ci left: 1.285997e-03	ci right 1.349855e-03	k: 6575	n:4990000
KS ci ratio: 3.892350e-02	ci left: 1.988971e-03	ci right 2.068122e-03	k: 10121	n:4990000
ZNF567   4990000 perm   9718 sec   (513 perm/sec)   p_kst 2.028257e-03   p_cons 1.317635e-03   p_joint 1.583166e-05

Joint ci ratio: 4.355520e-01	ci left: 1.268702e-05	ci right 1.991335e-05	k: 80	n:5000000
Cons ci ratio: 4.826763e-02	ci left: 1.285598e-03	ci right 1.349382e-03	k: 6586	n:5000000
KS ci ratio: 3.886591e-02	ci left: 1.990935e-03	ci right 2.070044e-03	k: 10151	n:5000000
ZNF567   5000000 perm   9760 sec   (512 perm/sec)   p_kst 2.030200e-03   p_cons 1.317200e-03   p_joint 1.600000e-05

Outputting figure to mutsig2_images.part000000000198/ZNF567.3_1863_5000000_0.0020302_0.0013172_1.6e-05.png
                gene_name: ZNF567
               theta_stop: 0.44 
                    nperm: 5000000 
                     p_ks: 0.0020 
        ci_ks_bounds_left: 0.0020 
       ci_ks_bounds_right: 0.0021 
                   p_cons: 0.0013 
      ci_cons_bounds_left: 0.0013 
     ci_cons_bounds_right: 0.0013 
                  p_joint: 1.60e-05 
     ci_joint_bounds_left: 1.27e-05 
    ci_joint_bounds_right: 1.99e-05 

Current progress: 54 percent done.
ZNF583
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.105657e-02	ci left: 4.669687e-01	ci right 4.866448e-01	k: 4768	n:10000
Cons ci ratio: 7.869324e-02	ci left: 1.909179e-01	ci right 2.066579e-01	k: 1987	n:10000
KS ci ratio: 7.171345e-03	ci left: 9.640458e-01	ci right 9.710784e-01	k: 9677	n:10000
ZNF583   10000 perm   1 sec   (7071 perm/sec)   p_kst 9.677000e-01   p_cons 1.987000e-01   p_joint 4.768000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF583.3_1726_10000_0.9677_0.1987_0.4768.png
                gene_name: ZNF583
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 56 percent done.
ZNF586
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.674720e-02	ci left: 6.730726e-01	ci right 6.914211e-01	k: 6823	n:10000
Cons ci ratio: 5.644165e-02	ci left: 3.161198e-01	ci right 3.345821e-01	k: 3253	n:10000
KS ci ratio: 1.185996e-02	ci left: 9.105972e-01	ci right 9.215590e-01	k: 9162	n:10000
ZNF586   10000 perm   1 sec   (7531 perm/sec)   p_kst 9.162000e-01   p_cons 3.253000e-01   p_joint 6.823000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF586.3_1221_10000_0.9162_0.3253_0.6823.png
                gene_name: ZNF586
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 57 percent done.
ZNF598
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.109888e-01	ci left: 1.047120e-01	ci right 1.171157e-01	k: 1108	n:10000
Cons ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
KS ci ratio: 2.510420e-01	ci left: 2.080800e-02	ci right 2.687375e-02	k: 237	n:10000
ZNF598   10000 perm   2 sec   (6557 perm/sec)   p_kst 2.370000e-02   p_cons 1   p_joint 1.108000e-01

Joint ci ratio: 7.486609e-02	ci left: 1.160187e-01	ci right 1.250920e-01	k: 2410	n:20000
Cons ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
KS ci ratio: 1.798538e-01	ci left: 2.111042e-02	ci right 2.532976e-02	k: 463	n:20000
ZNF598   20000 perm   3 sec   (5946 perm/sec)   p_kst 2.315000e-02   p_cons 1   p_joint 1.205000e-01

Joint ci ratio: 8.157673e-02	ci left: 6.854390e-02	ci right 7.440608e-02	k: 2143	n:30000
Cons ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
KS ci ratio: 1.465282e-01	ci left: 2.159043e-02	ci right 2.503607e-02	k: 698	n:30000
ZNF598   30000 perm   5 sec   (5674 perm/sec)   p_kst 2.326667e-02   p_cons 1   p_joint 7.143333e-02

Joint ci ratio: 6.250483e-02	ci left: 8.671987e-02	ci right 9.233988e-02	k: 3580	n:40000
Cons ci ratio: 9.799510e-05	ci left: 9.999078e-01	ci right 1	k: 40000	n:40000
KS ci ratio: 1.259326e-01	ci left: 2.215878e-02	ci right 2.516092e-02	k: 945	n:40000
ZNF598   40000 perm   7 sec   (5500 perm/sec)   p_kst 2.362500e-02   p_cons 1   p_joint 8.950000e-02

Joint ci ratio: 6.224098e-02	ci left: 7.120776e-02	ci right 7.580190e-02	k: 3674	n:50000
Cons ci ratio: 7.839686e-05	ci left: 9.999262e-01	ci right 1	k: 50000	n:50000
KS ci ratio: 1.128089e-01	ci left: 2.224826e-02	ci right 2.492744e-02	k: 1178	n:50000
ZNF598   50000 perm   9 sec   (5365 perm/sec)   p_kst 2.356000e-02   p_cons 1   p_joint 7.348000e-02

Joint ci ratio: 5.958384e-02	ci left: 6.527505e-02	ci right 6.930026e-02	k: 4036	n:60000
Cons ci ratio: 9.239298e-05	ci left: 9.999071e-01	ci right 9.999996e-01	k: 59999	n:60000
KS ci ratio: 1.020894e-01	ci left: 2.275760e-02	ci right 2.522207e-02	k: 1438	n:60000
ZNF598   60000 perm   11 sec   (5243 perm/sec)   p_kst 2.396667e-02   p_cons 9.999833e-01   p_joint 6.726667e-02

Joint ci ratio: 5.202179e-02	ci left: 7.307342e-02	ci right 7.699046e-02	k: 5251	n:70000
Cons ci ratio: 9.699346e-05	ci left: 9.998968e-01	ci right 9.999965e-01	k: 69998	n:70000
KS ci ratio: 9.413903e-02	ci left: 2.303236e-02	ci right 2.532160e-02	k: 1691	n:70000
ZNF598   70000 perm   14 sec   (5133 perm/sec)   p_kst 2.415714e-02   p_cons 9.999714e-01   p_joint 7.501429e-02

Outputting figure to mutsig2_images.part000000000198/ZNF598.3_2765_70000_0.024157_0.99997_0.075014.png
                gene_name: ZNF598
               theta_stop: 0.094 
                    nperm: 70000 
                     p_ks: 0.024 
        ci_ks_bounds_left: 0.023 
       ci_ks_bounds_right: 0.025 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.075 
     ci_joint_bounds_left: 0.073 
    ci_joint_bounds_right: 0.077 

Current progress: 59 percent done.
ZNF606
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.555493e-02	ci left: 8.571254e-01	ci right 8.706618e-01	k: 8640	n:10000
KS ci ratio: 3.231072e-02	ci left: 5.857036e-01	ci right 6.050408e-01	k: 5954	n:10000
ZNF606   10000 perm   2 sec   (6568 perm/sec)   p_kst 5.954000e-01   p_cons 8.640000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000198/ZNF606.3_2403_10000_0.5954_0.864_1.png
                gene_name: ZNF606
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 61 percent done.
ZNF607
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.854533e-02	ci left: 1.915089e-01	ci right 2.072666e-01	k: 1993	n:10000
Cons ci ratio: 8.304689e-02	ci left: 1.745794e-01	ci right 1.898062e-01	k: 1821	n:10000
KS ci ratio: 1.019464e-01	ci left: 1.221955e-01	ci right 1.354215e-01	k: 1287	n:10000
ZNF607   10000 perm   1 sec   (6739 perm/sec)   p_kst 1.287000e-01   p_cons 1.821000e-01   p_joint 1.993000e-01

Joint ci ratio: 7.696846e-02	ci left: 1.103641e-01	ci right 1.192483e-01	k: 2295	n:20000
Cons ci ratio: 5.899123e-02	ci left: 1.754880e-01	ci right 1.862050e-01	k: 3616	n:20000
KS ci ratio: 7.249256e-02	ci left: 1.229069e-01	ci right 1.322016e-01	k: 2550	n:20000
ZNF607   20000 perm   3 sec   (6079 perm/sec)   p_kst 1.275000e-01   p_cons 1.808000e-01   p_joint 1.147500e-01

Outputting figure to mutsig2_images.part000000000198/ZNF607.3_2107_20000_0.1275_0.1808_0.11475.png
                gene_name: ZNF607
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 62 percent done.
ZNF608
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.195989e-01	ci left: 9.117000e-02	ci right 1.028660e-01	k: 969	n:10000
Cons ci ratio: 1.207744e-01	ci left: 8.951617e-02	ci right 1.011208e-01	k: 952	n:10000
KS ci ratio: 8.420760e-02	ci left: 1.705475e-01	ci right 1.856405e-01	k: 1780	n:10000
ZNF608   10000 perm   2 sec   (5598 perm/sec)   p_kst 1.780000e-01   p_cons 9.520000e-02   p_joint 9.690000e-02

Joint ci ratio: 1.068507e-01	ci left: 5.967148e-02	ci right 6.645624e-02	k: 1260	n:20000
Cons ci ratio: 8.827251e-02	ci left: 8.577461e-02	ci right 9.374513e-02	k: 1794	n:20000
KS ci ratio: 5.982064e-02	ci left: 1.714362e-01	ci right 1.820579e-01	k: 3534	n:20000
ZNF608   20000 perm   4 sec   (5157 perm/sec)   p_kst 1.767000e-01   p_cons 8.970000e-02   p_joint 6.300000e-02

Joint ci ratio: 8.740425e-02	ci left: 6.008051e-02	ci right 6.560452e-02	k: 1884	n:30000
Cons ci ratio: 7.221473e-02	ci left: 8.619456e-02	ci right 9.268520e-02	k: 2682	n:30000
KS ci ratio: 4.877934e-02	ci left: 1.727949e-01	ci right 1.814677e-01	k: 5313	n:30000
ZNF608   30000 perm   6 sec   (4975 perm/sec)   p_kst 1.771000e-01   p_cons 8.940000e-02   p_joint 6.280000e-02

Outputting figure to mutsig2_images.part000000000198/ZNF608.3_4575_30000_0.1771_0.0894_0.0628.png
                gene_name: ZNF608
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.089 
      ci_cons_bounds_left: 0.086 
     ci_cons_bounds_right: 0.093 
                  p_joint: 0.063 
     ci_joint_bounds_left: 0.060 
    ci_joint_bounds_right: 0.066 

Current progress: 64 percent done.
ZNF610
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.871198e-02	ci left: 6.413636e-01	ci right 6.601485e-01	k: 6508	n:10000
Cons ci ratio: 5.596939e-02	ci left: 3.197920e-01	ci right 3.383077e-01	k: 3290	n:10000
KS ci ratio: 1.606713e-02	ci left: 8.491691e-01	ci right 8.630228e-01	k: 8562	n:10000
ZNF610   10000 perm   1 sec   (7270 perm/sec)   p_kst 8.562000e-01   p_cons 3.290000e-01   p_joint 6.508000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF610.3_1405_10000_0.8562_0.329_0.6508.png
                gene_name: ZNF610
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 66 percent done.
ZNF611
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.078848e-02	ci left: 7.722565e-01	ci right 7.885799e-01	k: 7805	n:10000
KS ci ratio: 1.738284e-02	ci left: 8.282899e-01	ci right 8.429141e-01	k: 8357	n:10000
ZNF611   10000 perm   1 sec   (6790 perm/sec)   p_kst 8.357000e-01   p_cons 7.805000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000198/ZNF611.3_2130_10000_0.8357_0.7805_1.png
                gene_name: ZNF611
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
ZNF613
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.210993e-02	ci left: 2.198072e-01	ci right 2.363514e-01	k: 2280	n:10000
Cons ci ratio: 1.407264e-01	ci left: 6.691220e-02	ci right 7.713880e-02	k: 719	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
ZNF613   10000 perm   1 sec   (7063 perm/sec)   p_kst 1   p_cons 7.190000e-02   p_joint 2.280000e-01

Joint ci ratio: 6.023501e-02	ci left: 1.694601e-01	ci right 1.800346e-01	k: 3494	n:20000
Cons ci ratio: 9.914022e-02	ci left: 6.889464e-02	ci right 7.613023e-02	k: 1449	n:20000
KS ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
ZNF613   20000 perm   3 sec   (6282 perm/sec)   p_kst 1   p_cons 7.245000e-02   p_joint 1.747000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF613.3_1870_20000_1_0.07245_0.1747.png
                gene_name: ZNF613
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.072 
      ci_cons_bounds_left: 0.069 
     ci_cons_bounds_right: 0.076 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 69 percent done.
ZNF615
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.974894e-02	ci left: 1.529626e-01	ci right 1.674359e-01	k: 1601	n:10000
Cons ci ratio: 9.100344e-02	ci left: 1.493316e-01	ci right 1.636692e-01	k: 1564	n:10000
KS ci ratio: 9.671176e-02	ci left: 1.342342e-01	ci right 1.479756e-01	k: 1410	n:10000
ZNF615   10000 perm   1 sec   (7275 perm/sec)   p_kst 1.410000e-01   p_cons 1.564000e-01   p_joint 1.601000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF615.3_2212_10000_0.141_0.1564_0.1601.png
                gene_name: ZNF615
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.17 

Current progress: 70 percent done.
ZNF624
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.299920e-02	ci left: 5.754698e-01	ci right 5.948805e-01	k: 5852	n:10000
Cons ci ratio: 6.787716e-02	ci left: 2.415369e-01	ci right 2.586089e-01	k: 2500	n:10000
KS ci ratio: 2.533159e-02	ci left: 6.963564e-01	ci right 7.143239e-01	k: 7054	n:10000
ZNF624   10000 perm   2 sec   (6623 perm/sec)   p_kst 7.054000e-01   p_cons 2.500000e-01   p_joint 5.852000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF624.3_2618_10000_0.7054_0.25_0.5852.png
                gene_name: ZNF624
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.59 

Current progress: 72 percent done.
ZNF630
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.635428e-02	ci left: 1.351158e-01	ci right 1.488935e-01	k: 1419	n:10000
Cons ci ratio: 2.180661e-01	ci left: 2.787955e-02	ci right 3.479702e-02	k: 312	n:10000
KS ci ratio: 7.148439e-03	ci left: 9.642561e-01	ci right 9.712679e-01	k: 9679	n:10000
ZNF630   10000 perm   2 sec   (6663 perm/sec)   p_kst 9.679000e-01   p_cons 3.120000e-02   p_joint 1.419000e-01

Joint ci ratio: 8.663852e-02	ci left: 8.881317e-02	ci right 9.690565e-02	k: 1856	n:20000
Cons ci ratio: 1.562733e-01	ci left: 2.811217e-02	ci right 3.292560e-02	k: 609	n:20000
KS ci ratio: 5.123890e-03	ci left: 9.644304e-01	ci right 9.694326e-01	k: 19340	n:20000
ZNF630   20000 perm   3 sec   (6005 perm/sec)   p_kst 9.670000e-01   p_cons 3.045000e-02   p_joint 9.280000e-02

Joint ci ratio: 7.784648e-02	ci left: 7.489150e-02	ci right 8.099053e-02	k: 2337	n:30000
Cons ci ratio: 1.263916e-01	ci left: 2.909993e-02	ci right 3.305824e-02	k: 931	n:30000
KS ci ratio: 4.197977e-03	ci left: 9.646760e-01	ci right 9.687663e-01	k: 29003	n:30000
ZNF630   30000 perm   5 sec   (5763 perm/sec)   p_kst 9.667667e-01   p_cons 3.103333e-02   p_joint 7.790000e-02

Joint ci ratio: 5.468812e-02	ci left: 1.107035e-01	ci right 1.169527e-01	k: 4552	n:40000
Cons ci ratio: 1.084570e-01	ci left: 2.990726e-02	ci right 3.336117e-02	k: 1264	n:40000
KS ci ratio: 3.607748e-03	ci left: 9.654590e-01	ci right 9.689727e-01	k: 38690	n:40000
ZNF630   40000 perm   7 sec   (5574 perm/sec)   p_kst 9.672500e-01   p_cons 3.160000e-02   p_joint 1.138000e-01

Joint ci ratio: 5.669033e-02	ci left: 8.480033e-02	ci right 8.976771e-02	k: 4363	n:50000
Cons ci ratio: 9.723753e-02	ci left: 2.994722e-02	ci right 3.302750e-02	k: 1573	n:50000
KS ci ratio: 3.226145e-03	ci left: 9.656628e-01	ci right 9.688026e-01	k: 48363	n:50000
ZNF630   50000 perm   9 sec   (5279 perm/sec)   p_kst 9.672600e-01   p_cons 3.146000e-02   p_joint 8.726000e-02

Outputting figure to mutsig2_images.part000000000198/ZNF630.3_1990_50000_0.96726_0.03146_0.08726.png
                gene_name: ZNF630
               theta_stop: 0.097 
                    nperm: 50000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.031 
      ci_cons_bounds_left: 0.030 
     ci_cons_bounds_right: 0.033 
                  p_joint: 0.087 
     ci_joint_bounds_left: 0.085 
    ci_joint_bounds_right: 0.090 

Current progress: 74 percent done.
ZNF644
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.388808e-02	ci left: 2.646814e-01	ci right 2.822508e-01	k: 2734	n:10000
Cons ci ratio: 5.514330e-02	ci left: 3.263440e-01	ci right 3.449518e-01	k: 3356	n:10000
KS ci ratio: 9.001671e-02	ci left: 1.521774e-01	ci right 1.666216e-01	k: 1593	n:10000
ZNF644   10000 perm   2 sec   (5319 perm/sec)   p_kst 1.593000e-01   p_cons 3.356000e-01   p_joint 2.734000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF644.3_4004_10000_0.1593_0.3356_0.2734.png
                gene_name: ZNF644
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 75 percent done.
ZNF658
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.877557e-02	ci left: 2.366945e-01	ci right 2.536542e-01	k: 2451	n:10000
Cons ci ratio: 9.093456e-02	ci left: 1.495278e-01	ci right 1.638728e-01	k: 1566	n:10000
KS ci ratio: 4.429668e-02	ci left: 4.293421e-01	ci right 4.488934e-01	k: 4391	n:10000
ZNF658   10000 perm   2 sec   (5595 perm/sec)   p_kst 4.391000e-01   p_cons 1.566000e-01   p_joint 2.451000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF658.3_3196_10000_0.4391_0.1566_0.2451.png
                gene_name: ZNF658
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 77 percent done.
ZNF664
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.881310e-02	ci left: 6.397543e-01	ci right 6.585588e-01	k: 6492	n:10000
KS ci ratio: 2.802675e-02	ci left: 6.523307e-01	ci right 6.709750e-01	k: 6617	n:10000
ZNF664   10000 perm   2 sec   (6475 perm/sec)   p_kst 6.617000e-01   p_cons 6.492000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000198/ZNF664.3_790_10000_0.6617_0.6492_1.png
                gene_name: ZNF664
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
ZNF563
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.254161e-02	ci left: 9.013439e-01	ci right 9.128177e-01	k: 9072	n:10000
Cons ci ratio: 3.630636e-02	ci left: 5.283689e-01	ci right 5.480089e-01	k: 5382	n:10000
KS ci ratio: 8.847932e-03	ci left: 9.472103e-01	ci right 9.557242e-01	k: 9516	n:10000
ZNF563   10000 perm   2 sec   (6491 perm/sec)   p_kst 9.516000e-01   p_cons 5.382000e-01   p_joint 9.072000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF563.2_1447_10000_0.9516_0.5382_0.9072.png
                gene_name: ZNF563
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 80 percent done.
ZNF564
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.401569e-02	ci left: 8.803248e-01	ci right 8.928490e-01	k: 8867	n:10000
Cons ci ratio: 3.858401e-03	ci left: 9.883990e-01	ci right 9.923073e-01	k: 9905	n:10000
KS ci ratio: 2.925720e-02	ci left: 6.327145e-01	ci right 6.516026e-01	k: 6422	n:10000
ZNF564   10000 perm   2 sec   (6556 perm/sec)   p_kst 6.422000e-01   p_cons 9.905000e-01   p_joint 8.867000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF564.2_1678_10000_0.6422_0.9905_0.8867.png
                gene_name: ZNF564
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 82 percent done.
ZNF565
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.608933e-02	ci left: 6.838544e-01	ci right 7.020331e-01	k: 6930	n:10000
KS ci ratio: 4.221808e-02	ci left: 4.530892e-01	ci right 4.727324e-01	k: 4629	n:10000
ZNF565   10000 perm   2 sec   (6417 perm/sec)   p_kst 4.629000e-01   p_cons 6.930000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000198/ZNF565.2_1516_10000_0.4629_0.693_1.png
                gene_name: ZNF565
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
ZNF568
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.282789e-01	ci left: 7.989663e-02	ci right 9.094628e-02	k: 853	n:10000
Cons ci ratio: 2.483822e-01	ci left: 2.127733e-02	ci right 2.740406e-02	k: 242	n:10000
KS ci ratio: 3.266730e-02	ci left: 5.803855e-01	ci right 5.997620e-01	k: 5901	n:10000
ZNF568   10000 perm   2 sec   (6206 perm/sec)   p_kst 5.901000e-01   p_cons 2.420000e-02   p_joint 8.530000e-02

Joint ci ratio: 1.271729e-01	ci left: 4.245914e-02	ci right 4.827396e-02	k: 906	n:20000
Cons ci ratio: 1.782866e-01	ci left: 2.149287e-02	ci right 2.574718e-02	k: 471	n:20000
KS ci ratio: 2.324410e-02	ci left: 5.802392e-01	ci right 5.939355e-01	k: 11742	n:20000
ZNF568   20000 perm   4 sec   (5581 perm/sec)   p_kst 5.871000e-01   p_cons 2.355000e-02   p_joint 4.530000e-02

Joint ci ratio: 7.049668e-02	ci left: 9.012999e-02	ci right 9.674899e-02	k: 2802	n:30000
Cons ci ratio: 1.454663e-01	ci left: 2.191185e-02	ci right 2.538125e-02	k: 708	n:30000
KS ci ratio: 1.901434e-02	ci left: 5.806020e-01	ci right 5.917813e-01	k: 17586	n:30000
ZNF568   30000 perm   6 sec   (5332 perm/sec)   p_kst 5.862000e-01   p_cons 2.360000e-02   p_joint 9.340000e-02

Joint ci ratio: 6.825589e-02	ci left: 7.356905e-02	ci right 7.879268e-02	k: 3046	n:40000
Cons ci ratio: 1.261376e-01	ci left: 2.208610e-02	ci right 2.508362e-02	k: 942	n:40000
KS ci ratio: 1.640604e-02	ci left: 5.831578e-01	ci right 5.928294e-01	k: 23520	n:40000
ZNF568   40000 perm   8 sec   (5162 perm/sec)   p_kst 5.880000e-01   p_cons 2.355000e-02   p_joint 7.615000e-02

Joint ci ratio: 6.698584e-02	ci left: 6.194879e-02	ci right 6.626199e-02	k: 3204	n:50000
Cons ci ratio: 1.129562e-01	ci left: 2.218992e-02	ci right 2.486580e-02	k: 1175	n:50000
KS ci ratio: 1.466803e-02	ci left: 5.838711e-01	ci right 5.925187e-01	k: 29410	n:50000
ZNF568   50000 perm   10 sec   (5027 perm/sec)   p_kst 5.882000e-01   p_cons 2.350000e-02   p_joint 6.408000e-02

Joint ci ratio: 6.309124e-02	ci left: 5.853963e-02	ci right 6.236969e-02	k: 3626	n:60000
Cons ci ratio: 1.043402e-01	ci left: 2.178284e-02	ci right 2.419693e-02	k: 1378	n:60000
KS ci ratio: 1.335877e-02	ci left: 5.853844e-01	ci right 5.932737e-01	k: 35360	n:60000
ZNF568   60000 perm   12 sec   (4909 perm/sec)   p_kst 5.893333e-01   p_cons 2.296667e-02   p_joint 6.043333e-02

Joint ci ratio: 5.824656e-02	ci left: 5.899859e-02	ci right 6.255222e-02	k: 4253	n:70000
Cons ci ratio: 9.619818e-02	ci left: 2.205562e-02	ci right 2.429843e-02	k: 1621	n:70000
KS ci ratio: 1.232968e-02	ci left: 5.871754e-01	ci right 5.944742e-01	k: 41358	n:70000
ZNF568   70000 perm   15 sec   (4800 perm/sec)   p_kst 5.908286e-01   p_cons 2.315714e-02   p_joint 6.075714e-02

Outputting figure to mutsig2_images.part000000000198/ZNF568.2_1955_70000_0.59083_0.023157_0.060757.png
                gene_name: ZNF568
               theta_stop: 0.096 
                    nperm: 70000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.023 
      ci_cons_bounds_left: 0.022 
     ci_cons_bounds_right: 0.024 
                  p_joint: 0.061 
     ci_joint_bounds_left: 0.059 
    ci_joint_bounds_right: 0.063 

Current progress: 85 percent done.
ZNF57
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.724413e-03	ci left: 9.373421e-01	ci right 9.465983e-01	k: 9421	n:10000
Cons ci ratio: 6.465934e-03	ci left: 9.702664e-01	ci right 9.766537e-01	k: 9736	n:10000
KS ci ratio: 2.698805e-02	ci left: 6.691442e-01	ci right 6.875518e-01	k: 6784	n:10000
ZNF57   10000 perm   2 sec   (6345 perm/sec)   p_kst 6.784000e-01   p_cons 9.736000e-01   p_joint 9.421000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF57.2_1684_10000_0.6784_0.9736_0.9421.png
                gene_name: ZNF57
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 87 percent done.
ZNF572
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.626109e-02	ci left: 6.810325e-01	ci right 6.992566e-01	k: 6902	n:10000
Cons ci ratio: 1.688685e-02	ci left: 8.362290e-01	ci right 8.505703e-01	k: 8435	n:10000
KS ci ratio: 9.042192e-02	ci left: 1.509997e-01	ci right 1.654000e-01	k: 1581	n:10000
ZNF572   10000 perm   2 sec   (6255 perm/sec)   p_kst 1.581000e-01   p_cons 8.435000e-01   p_joint 6.902000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF572.2_1598_10000_0.1581_0.8435_0.6902.png
                gene_name: ZNF572
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 89 percent done.
ZNF573
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.572663e-02	ci left: 1.366833e-01	ci right 1.505251e-01	k: 1435	n:10000
Cons ci ratio: 1.668597e-01	ci left: 4.792139e-02	ci right 5.674170e-02	k: 522	n:10000
KS ci ratio: 6.250251e-02	ci left: 2.733932e-01	ci right 2.911338e-01	k: 2822	n:10000
ZNF573   10000 perm   2 sec   (6306 perm/sec)   p_kst 2.822000e-01   p_cons 5.220000e-02   p_joint 1.435000e-01

Joint ci ratio: 8.075267e-02	ci left: 1.011278e-01	ci right 1.096873e-01	k: 2107	n:20000
Cons ci ratio: 1.118587e-01	ci left: 5.460525e-02	ci right 6.112403e-02	k: 1156	n:20000
KS ci ratio: 4.461986e-02	ci left: 2.721958e-01	ci right 2.846687e-01	k: 5568	n:20000
ZNF573   20000 perm   4 sec   (5577 perm/sec)   p_kst 2.784000e-01   p_cons 5.780000e-02   p_joint 1.053500e-01

Joint ci ratio: 8.805403e-02	ci left: 5.923168e-02	ci right 6.472020e-02	k: 1858	n:30000
Cons ci ratio: 9.157119e-02	ci left: 5.492461e-02	ci right 6.022814e-02	k: 1726	n:30000
KS ci ratio: 3.640636e-02	ci left: 2.736314e-01	ci right 2.838115e-01	k: 8361	n:30000
ZNF573   30000 perm   6 sec   (5364 perm/sec)   p_kst 2.787000e-01   p_cons 5.753333e-02   p_joint 6.193333e-02

Outputting figure to mutsig2_images.part000000000198/ZNF573.2_2139_30000_0.2787_0.057533_0.061933.png
                gene_name: ZNF573
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.058 
      ci_cons_bounds_left: 0.055 
     ci_cons_bounds_right: 0.060 
                  p_joint: 0.062 
     ci_joint_bounds_left: 0.059 
    ci_joint_bounds_right: 0.065 

Current progress: 90 percent done.
ZNF574
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.113205e-01	ci left: 7.153353e-03	ci right 1.094096e-02	k: 89	n:10000
Cons ci ratio: 3.265993e-01	ci left: 1.188149e-02	ci right 1.660771e-02	k: 141	n:10000
KS ci ratio: 6.000711e-02	ci left: 2.900365e-01	ci right 3.080807e-01	k: 2990	n:10000
ZNF574   10000 perm   2 sec   (5872 perm/sec)   p_kst 2.990000e-01   p_cons 1.410000e-02   p_joint 8.900000e-03

Joint ci ratio: 1.410125e-01	ci left: 3.457132e-02	ci right 3.986432e-02	k: 743	n:20000
Cons ci ratio: 2.305348e-01	ci left: 1.260619e-02	ci right 1.593723e-02	k: 284	n:20000
KS ci ratio: 4.231047e-02	ci left: 2.939019e-01	ci right 3.066562e-01	k: 6005	n:20000
ZNF574   20000 perm   4 sec   (5307 perm/sec)   p_kst 3.002500e-01   p_cons 1.420000e-02   p_joint 3.715000e-02

Joint ci ratio: 1.637964e-01	ci left: 1.719719e-02	ci right 2.029700e-02	k: 561	n:30000
Cons ci ratio: 1.906213e-01	ci left: 1.257399e-02	ci right 1.525470e-02	k: 416	n:30000
KS ci ratio: 3.437453e-02	ci left: 2.971722e-01	ci right 3.075995e-01	k: 9071	n:30000
ZNF574   30000 perm   6 sec   (5072 perm/sec)   p_kst 3.023667e-01   p_cons 1.386667e-02   p_joint 1.870000e-02

Joint ci ratio: 1.891328e-01	ci left: 9.619560e-03	ci right 1.165242e-02	k: 424	n:40000
Cons ci ratio: 1.615828e-01	ci left: 1.332738e-02	ci right 1.569388e-02	k: 579	n:40000
KS ci ratio: 2.982578e-02	ci left: 2.970795e-01	ci right 3.060993e-01	k: 12063	n:40000
ZNF574   40000 perm   8 sec   (4913 perm/sec)   p_kst 3.015750e-01   p_cons 1.447500e-02   p_joint 1.060000e-02

Joint ci ratio: 1.367850e-01	ci left: 1.505362e-02	ci right 1.728307e-02	k: 807	n:50000
Cons ci ratio: 1.447271e-01	ci left: 1.341261e-02	ci right 1.552431e-02	k: 722	n:50000
KS ci ratio: 2.663400e-02	ci left: 2.982363e-01	ci right 3.063067e-01	k: 15113	n:50000
ZNF574   50000 perm   10 sec   (4789 perm/sec)   p_kst 3.022600e-01   p_cons 1.444000e-02   p_joint 1.614000e-02

Joint ci ratio: 1.209097e-01	ci left: 1.617474e-02	ci right 1.827233e-02	k: 1032	n:60000
Cons ci ratio: 1.316256e-01	ci left: 1.360708e-02	ci right 1.554029e-02	k: 873	n:60000
KS ci ratio: 2.420414e-02	ci left: 3.004867e-01	ci right 3.078655e-01	k: 18250	n:60000
ZNF574   60000 perm   13 sec   (4679 perm/sec)   p_kst 3.041667e-01   p_cons 1.455000e-02   p_joint 1.720000e-02

Joint ci ratio: 1.119487e-01	ci left: 1.624975e-02	ci right 1.819056e-02	k: 1204	n:70000
Cons ci ratio: 1.217205e-01	ci left: 1.371061e-02	ci right 1.550138e-02	k: 1021	n:70000
KS ci ratio: 2.244719e-02	ci left: 3.000381e-01	ci right 3.068639e-01	k: 21241	n:70000
ZNF574   70000 perm   15 sec   (4579 perm/sec)   p_kst 3.034429e-01   p_cons 1.458571e-02   p_joint 1.720000e-02

Joint ci ratio: 1.041103e-01	ci left: 1.650520e-02	ci right 1.833003e-02	k: 1392	n:80000
Cons ci ratio: 1.132702e-01	ci left: 1.391387e-02	ci right 1.559659e-02	k: 1179	n:80000
KS ci ratio: 2.101144e-02	ci left: 2.999785e-01	ci right 3.063608e-01	k: 24253	n:80000
ZNF574   80000 perm   18 sec   (4486 perm/sec)   p_kst 3.031625e-01   p_cons 1.473750e-02   p_joint 1.740000e-02

Joint ci ratio: 1.465327e-01	ci left: 7.310549e-03	ci right 8.477060e-03	k: 709	n:90000
Cons ci ratio: 1.167177e-01	ci left: 1.165484e-02	ci right 1.311018e-02	k: 1113	n:90000
KS ci ratio: 1.979820e-02	ci left: 3.004084e-01	ci right 3.064265e-01	k: 27307	n:90000
ZNF574   90000 perm   20 sec   (4401 perm/sec)   p_kst 3.034111e-01   p_cons 1.236667e-02   p_joint 7.877778e-03

Joint ci ratio: 1.388261e-01	ci left: 7.360605e-03	ci right 8.468223e-03	k: 790	n:100000
Cons ci ratio: 1.104474e-01	ci left: 1.175247e-02	ci right 1.313603e-02	k: 1243	n:100000
KS ci ratio: 1.876589e-02	ci left: 3.009304e-01	ci right 3.066410e-01	k: 30378	n:100000
ZNF574   100000 perm   23 sec   (4309 perm/sec)   p_kst 3.037800e-01   p_cons 1.243000e-02   p_joint 7.900000e-03

Joint ci ratio: 1.357978e-01	ci left: 7.007401e-03	ci right 8.037002e-03	k: 826	n:110000
Cons ci ratio: 1.062311e-01	ci left: 1.157731e-02	ci right 1.288496e-02	k: 1344	n:110000
KS ci ratio: 1.784267e-02	ci left: 3.022436e-01	ci right 3.076940e-01	k: 33546	n:110000
ZNF574   110000 perm   26 sec   (4231 perm/sec)   p_kst 3.049636e-01   p_cons 1.221818e-02   p_joint 7.509091e-03

Joint ci ratio: 1.262753e-01	ci left: 7.463357e-03	ci right 8.477304e-03	k: 955	n:120000
Cons ci ratio: 1.013342e-01	ci left: 1.169214e-02	ci right 1.294826e-02	k: 1477	n:120000
KS ci ratio: 1.709137e-02	ci left: 3.021545e-01	ci right 3.073716e-01	k: 36571	n:120000
ZNF574   120000 perm   29 sec   (4160 perm/sec)   p_kst 3.047583e-01   p_cons 1.230833e-02   p_joint 7.958333e-03

Joint ci ratio: 1.180704e-01	ci left: 7.911026e-03	ci right 8.911087e-03	k: 1092	n:130000
Cons ci ratio: 9.767320e-02	ci left: 1.164033e-02	ci right 1.284311e-02	k: 1590	n:130000
KS ci ratio: 1.640557e-02	ci left: 3.026513e-01	ci right 3.076651e-01	k: 39670	n:130000
ZNF574   130000 perm   32 sec   (4089 perm/sec)   p_kst 3.051538e-01   p_cons 1.223077e-02   p_joint 8.400000e-03

Joint ci ratio: 1.156263e-01	ci left: 7.671800e-03	ci right 8.620170e-03	k: 1139	n:140000
Cons ci ratio: 9.418665e-02	ci left: 1.164546e-02	ci right 1.280344e-02	k: 1710	n:140000
KS ci ratio: 1.579965e-02	ci left: 3.029879e-01	ci right 3.078202e-01	k: 42756	n:140000
ZNF574   140000 perm   35 sec   (4021 perm/sec)   p_kst 3.054000e-01   p_cons 1.221429e-02   p_joint 8.135714e-03

Joint ci ratio: 1.126594e-01	ci left: 7.555377e-03	ci right 8.463795e-03	k: 1200	n:150000
Cons ci ratio: 9.084795e-02	ci left: 1.170270e-02	ci right 1.282294e-02	k: 1838	n:150000
KS ci ratio: 1.527521e-02	ci left: 3.027570e-01	ci right 3.074239e-01	k: 45763	n:150000
ZNF574   150000 perm   38 sec   (3957 perm/sec)   p_kst 3.050867e-01   p_cons 1.225333e-02   p_joint 8.000000e-03

Joint ci ratio: 8.799950e-02	ci left: 1.171062e-02	ci right 1.279466e-02	k: 1959	n:160000
Cons ci ratio: 8.809055e-02	ci left: 1.168617e-02	ci right 1.276911e-02	k: 1955	n:160000
KS ci ratio: 1.477947e-02	ci left: 3.031374e-01	ci right 3.076572e-01	k: 48863	n:160000
ZNF574   160000 perm   41 sec   (3895 perm/sec)   p_kst 3.053938e-01   p_cons 1.221875e-02   p_joint 1.224375e-02

Outputting figure to mutsig2_images.part000000000198/ZNF574.2_2695_160000_0.30539_0.012219_0.012244.png
                gene_name: ZNF574
               theta_stop: 0.088 
                    nperm: 160000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.012 
      ci_cons_bounds_left: 0.012 
     ci_cons_bounds_right: 0.013 
                  p_joint: 0.012 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.013 

Current progress: 92 percent done.
ZNF577
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.230306e-02	ci left: 4.520910e-01	ci right 4.717312e-01	k: 4619	n:10000
Cons ci ratio: 8.757768e-02	ci left: 1.595411e-01	ci right 1.742535e-01	k: 1668	n:10000
KS ci ratio: 1.259363e-02	ci left: 9.006249e-01	ci right 9.121371e-01	k: 9065	n:10000
ZNF577   10000 perm   1 sec   (6746 perm/sec)   p_kst 9.065000e-01   p_cons 1.668000e-01   p_joint 4.619000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF577.2_1474_10000_0.9065_0.1668_0.4619.png
                gene_name: ZNF577
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 93 percent done.
ZNF582
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.848532e-02	ci left: 8.103969e-01	ci right 8.256173e-01	k: 8181	n:10000
Cons ci ratio: 3.274838e-02	ci left: 5.791816e-01	ci right 5.985666e-01	k: 5889	n:10000
KS ci ratio: 3.441262e-02	ci left: 5.549149e-01	ci right 5.744474e-01	k: 5647	n:10000
ZNF582   10000 perm   2 sec   (6459 perm/sec)   p_kst 5.647000e-01   p_cons 5.889000e-01   p_joint 8.181000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF582.2_1570_10000_0.5647_0.5889_0.8181.png
                gene_name: ZNF582
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 95 percent done.
ZNF625
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.174331e-02	ci left: 2.215840e-01	ci right 2.381737e-01	k: 2298	n:10000
Cons ci ratio: 7.656007e-02	ci left: 1.996866e-01	ci right 2.156840e-01	k: 2076	n:10000
KS ci ratio: 3.311486e-02	ci left: 5.737646e-01	ci right 5.931867e-01	k: 5835	n:10000
ZNF625   10000 perm   1 sec   (6785 perm/sec)   p_kst 5.835000e-01   p_cons 2.076000e-01   p_joint 2.298000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF625.2_925_10000_0.5835_0.2076_0.2298.png
                gene_name: ZNF625
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 97 percent done.
ZNF642
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.466975e-02	ci left: 8.706072e-01	ci right 8.835722e-01	k: 8772	n:10000
Cons ci ratio: 2.723572e-02	ci left: 6.651158e-01	ci right 6.835825e-01	k: 6744	n:10000
KS ci ratio: 1.553508e-02	ci left: 8.574316e-01	ci right 8.709555e-01	k: 8643	n:10000
ZNF642   10000 perm   2 sec   (6431 perm/sec)   p_kst 8.643000e-01   p_cons 6.744000e-01   p_joint 8.772000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF642.2_1601_10000_0.8643_0.6744_0.8772.png
                gene_name: ZNF642
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 98 percent done.
ZNF649
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.585952e-03	ci left: 9.500226e-01	ci right 9.583102e-01	k: 9543	n:10000
KS ci ratio: 4.909800e-02	ci left: 3.796273e-01	ci right 3.988373e-01	k: 3892	n:10000
ZNF649   10000 perm   2 sec   (6477 perm/sec)   p_kst 3.892000e-01   p_cons 9.543000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000198/ZNF649.2_1534_10000_0.3892_0.9543_1.png
                gene_name: ZNF649
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000198
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 198 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1726>
Subject: Job 8004728: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1726>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000199> was used as the working directory.
Started at Sun Nov 11 15:27:34 2012
Results reported at Sun Nov 11 15:33:48 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000199.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000199.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 199  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000199.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    359.61 sec.
    Max Memory :      4808 MB
    Max Swap   :      7081 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
199
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 199
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 199: processing genes 17914 - 18004
Calculating significance of each gene.
Using projection method.
17914	ZNF667	1
17915	ZNF668	8.298767e-01
17916	ZNF669	7.582370e-01
17917	ZNF670	6.541288e-01
17918	ZNF671	6.931339e-01
17919	ZNF672	1
17920	ZNF673	1
17921	ZNF674	1
17922	ZNF675	5.419759e-03
17923	ZNF676	1
17924	ZNF677	4.416651e-01
17925	ZNF678	8.410089e-01
17926	ZNF679	1
17927	ZNF680	5.458113e-01
17928	ZNF681	4.011257e-01
17929	ZNF682	1.649551e-01
17930	ZNF683	1
17931	ZNF684	4.103199e-01
17932	ZNF687	7.873611e-01
17933	ZNF688	1
17934	ZNF689	7.934600e-01
17935	ZNF69	1
17936	ZNF691	1
17937	ZNF692	6.273022e-01
17938	ZNF695	3.702443e-01
17939	ZNF696	2.344076e-01
17940	ZNF697	5.637879e-01
17941	ZNF699	1
17942	ZNF7	1
17943	ZNF70	6.790921e-01
17944	ZNF700	3.412312e-01
17945	ZNF701	3.376012e-01
17946	ZNF704	1
17947	ZNF705A	3.052784e-01
17948	ZNF705D	1
17949	ZNF706	1
17950	ZNF707	7.812689e-01
17951	ZNF708	1.548959e-02
17952	ZNF709	5.205562e-01
17953	ZNF71	1
17954	ZNF710	8.340350e-01
17955	ZNF711	3.315965e-02
17956	ZNF713	7.597395e-01
17957	ZNF714	3.956831e-01
17958	ZNF716	1
17959	ZNF718	5.296800e-02
17960	ZNF720	1
17961	ZNF721	3.197535e-01
17962	ZNF727	1
17963	ZNF732	1
17964	ZNF735	1
17965	ZNF736	1
17966	ZNF737	1
17967	ZNF74	6.805891e-01
17968	ZNF740	1
17969	ZNF746	6.274945e-02
17970	ZNF747	4.303396e-02
17971	ZNF749	8.938055e-01
17972	ZNF750	7.141898e-01
17973	ZNF75A	1.189149e-02
17974	ZNF75D	4.508136e-01
17975	ZNF76	8.265742e-01
17976	ZNF761	3.304043e-03
17977	ZNF763	1
17978	ZNF764	5.461361e-01
17979	ZNF765	2.287580e-02
17980	ZNF766	7.056483e-01
17981	ZNF768	7.251949e-01
17982	ZNF77	4.327802e-01
17983	ZNF770	1
17984	ZNF772	1
17985	ZNF773	4.348919e-01
17986	ZNF774	2.274942e-01
17987	ZNF775	5.610109e-01
17988	ZNF776	2.036556e-01
17989	ZNF777	6.660252e-01
17990	ZNF778	6.466322e-01
17991	ZNF780A	1.712483e-02
17992	ZNF780B	4.644971e-01
17993	ZNF781	1.460067e-02
17994	ZNF782	4.474929e-01
17995	ZNF784	1
17996	ZNF785	5.100110e-01
17997	ZNF786	1
17998	ZNF787	1.750847e-03
17999	ZNF789	6.067147e-01
18000/18094 18000	ZNF79	2.546642e-01
18001	ZNF790	6.950679e-01
18002	ZNF791	4.567581e-01
18003	ZNF792	1
18004	ZNF793	8.008101e-01
Done

Running MutSig 2:
Scatter job 199: processing genes 17914 - 18004
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ZNF676
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.800821e-02	ci left: 1.936760e-01	ci right 2.094982e-01	k: 2015	n:10000
Cons ci ratio: 9.032022e-02	ci left: 1.512941e-01	ci right 1.657054e-01	k: 1584	n:10000
KS ci ratio: 5.475004e-02	ci left: 3.295215e-01	ci right 3.481725e-01	k: 3388	n:10000
ZNF676   10000 perm   2 sec   (5007 perm/sec)   p_kst 3.388000e-01   p_cons 1.584000e-01   p_joint 2.015000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF676.17_1779_10000_0.3388_0.1584_0.2015.png
                gene_name: ZNF676
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 2 percent done.
ZNF761
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.432495e-02	ci left: 2.620092e-01	ci right 2.795245e-01	k: 2707	n:10000
Cons ci ratio: 6.950796e-02	ci left: 2.328414e-01	ci right 2.497096e-01	k: 2412	n:10000
KS ci ratio: 6.851645e-02	ci left: 2.380779e-01	ci right 2.550700e-01	k: 2465	n:10000
ZNF761   10000 perm   2 sec   (5011 perm/sec)   p_kst 2.465000e-01   p_cons 2.412000e-01   p_joint 2.707000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF761.9_2254_10000_0.2465_0.2412_0.2707.png
                gene_name: ZNF761
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 4 percent done.
ZNF711
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.632709e-02	ci left: 8.450916e-01	ci right 8.591026e-01	k: 8522	n:10000
Cons ci ratio: 3.972278e-02	ci left: 4.834542e-01	ci right 5.031497e-01	k: 4933	n:10000
KS ci ratio: 2.204041e-02	ci left: 7.513020e-01	ci right 7.681465e-01	k: 7598	n:10000
ZNF711   10000 perm   2 sec   (5720 perm/sec)   p_kst 7.598000e-01   p_cons 4.933000e-01   p_joint 8.522000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF711.8_2314_10000_0.7598_0.4933_0.8522.png
                gene_name: ZNF711
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 6 percent done.
ZNF675
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.907576e-02	ci left: 2.965789e-01	ci right 3.147345e-01	k: 3056	n:10000
Cons ci ratio: 6.714328e-02	ci left: 2.455898e-01	ci right 2.627536e-01	k: 2541	n:10000
KS ci ratio: 8.106743e-02	ci left: 1.817616e-01	ci right 1.972197e-01	k: 1894	n:10000
ZNF675   10000 perm   2 sec   (4468 perm/sec)   p_kst 1.894000e-01   p_cons 2.541000e-01   p_joint 3.056000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF675.7_1723_10000_0.1894_0.2541_0.3056.png
                gene_name: ZNF675
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 8 percent done.
ZNF765
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.151183e-02	ci left: 4.614759e-01	ci right 4.811408e-01	k: 4713	n:10000
Cons ci ratio: 6.025129e-02	ci left: 2.883517e-01	ci right 3.063665e-01	k: 2973	n:10000
KS ci ratio: 2.695096e-02	ci left: 6.697486e-01	ci right 6.881471e-01	k: 6790	n:10000
ZNF765   10000 perm   2 sec   (5531 perm/sec)   p_kst 6.790000e-01   p_cons 2.973000e-01   p_joint 4.713000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF765.7_1584_10000_0.679_0.2973_0.4713.png
                gene_name: ZNF765
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 10 percent done.
ZNF780A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.935483e-01	ci left: 3.557635e-02	ci right 4.329490e-02	k: 393	n:10000
Cons ci ratio: 7.361654e-02	ci left: 2.127026e-01	ci right 2.290604e-01	k: 2208	n:10000
KS ci ratio: 2.903464e-01	ci left: 1.529963e-02	ci right 2.058652e-02	k: 178	n:10000
ZNF780A   10000 perm   2 sec   (5730 perm/sec)   p_kst 1.780000e-02   p_cons 2.208000e-01   p_joint 3.930000e-02

Joint ci ratio: 1.786746e-01	ci left: 2.139724e-02	ci right 2.564284e-02	k: 469	n:20000
Cons ci ratio: 4.868470e-02	ci left: 2.388039e-01	ci right 2.507704e-01	k: 4895	n:20000
KS ci ratio: 2.050195e-01	ci left: 1.610780e-02	ci right 1.983423e-02	k: 358	n:20000
ZNF780A   20000 perm   4 sec   (5161 perm/sec)   p_kst 1.790000e-02   p_cons 2.447500e-01   p_joint 2.345000e-02

Joint ci ratio: 1.001342e-01	ci left: 4.616135e-02	ci right 5.105987e-02	k: 1457	n:30000
Cons ci ratio: 4.004708e-02	ci left: 2.371951e-01	ci right 2.469216e-01	k: 7261	n:30000
KS ci ratio: 1.642437e-01	ci left: 1.710123e-02	ci right 2.019299e-02	k: 558	n:30000
ZNF780A   30000 perm   6 sec   (4956 perm/sec)   p_kst 1.860000e-02   p_cons 2.420333e-01   p_joint 4.856667e-02

Joint ci ratio: 8.318118e-02	ci left: 5.040788e-02	ci right 5.480735e-02	k: 2103	n:40000
Cons ci ratio: 3.630561e-02	ci left: 2.215611e-01	ci right 2.297788e-01	k: 9026	n:40000
KS ci ratio: 1.436538e-01	ci left: 1.696081e-02	ci right 1.960978e-02	k: 730	n:40000
ZNF780A   40000 perm   8 sec   (4811 perm/sec)   p_kst 1.825000e-02   p_cons 2.256500e-01   p_joint 5.257500e-02

Joint ci ratio: 7.892194e-02	ci left: 4.516128e-02	ci right 4.889154e-02	k: 2350	n:50000
Cons ci ratio: 3.241109e-02	ci left: 2.226582e-01	ci right 2.300136e-01	k: 11316	n:50000
KS ci ratio: 1.289019e-01	ci left: 1.698825e-02	ci right 1.934816e-02	k: 907	n:50000
ZNF780A   50000 perm   11 sec   (4702 perm/sec)   p_kst 1.814000e-02   p_cons 2.263200e-01   p_joint 4.700000e-02

Joint ci ratio: 8.271295e-02	ci left: 3.458888e-02	ci right 3.758955e-02	k: 2164	n:60000
Cons ci ratio: 3.028322e-02	ci left: 2.149834e-01	ci right 2.216105e-01	k: 13097	n:60000
KS ci ratio: 1.140264e-01	ci left: 1.821414e-02	ci right 2.043270e-02	k: 1158	n:60000
ZNF780A   60000 perm   13 sec   (4610 perm/sec)   p_kst 1.930000e-02   p_cons 2.182833e-01   p_joint 3.606667e-02

Joint ci ratio: 6.778241e-02	ci left: 4.405224e-02	ci right 4.715699e-02	k: 3191	n:70000
Cons ci ratio: 2.668754e-02	ci left: 2.324459e-01	ci right 2.387475e-01	k: 16491	n:70000
KS ci ratio: 1.051787e-01	ci left: 1.843281e-02	ci right 2.049301e-02	k: 1361	n:70000
ZNF780A   70000 perm   15 sec   (4524 perm/sec)   p_kst 1.944286e-02   p_cons 2.355857e-01   p_joint 4.558571e-02

Joint ci ratio: 6.388322e-02	ci left: 4.351221e-02	ci right 4.639591e-02	k: 3595	n:80000
Cons ci ratio: 2.435404e-02	ci left: 2.416368e-01	ci right 2.476067e-01	k: 19569	n:80000
KS ci ratio: 9.792390e-02	ci left: 1.867502e-02	ci right 2.061004e-02	k: 1570	n:80000
ZNF780A   80000 perm   18 sec   (4446 perm/sec)   p_kst 1.962500e-02   p_cons 2.446125e-01   p_joint 4.493750e-02

Outputting figure to mutsig2_images.part000000000199/ZNF780A.7_2124_80000_0.019625_0.24461_0.044937.png
                gene_name: ZNF780A
               theta_stop: 0.098 
                    nperm: 80000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.021 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.045 
     ci_joint_bounds_left: 0.044 
    ci_joint_bounds_right: 0.046 

Current progress: 12 percent done.
ZNF708
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.430771e-02	ci left: 2.095461e-01	ci right 2.258187e-01	k: 2176	n:10000
Cons ci ratio: 8.285235e-02	ci left: 1.752679e-01	ci right 1.905173e-01	k: 1828	n:10000
KS ci ratio: 9.100344e-02	ci left: 1.493316e-01	ci right 1.636692e-01	k: 1564	n:10000
ZNF708   10000 perm   2 sec   (5578 perm/sec)   p_kst 1.564000e-01   p_cons 1.828000e-01   p_joint 2.176000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF708.6_1708_10000_0.1564_0.1828_0.2176.png
                gene_name: ZNF708
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 14 percent done.
ZNF667
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.048634e-01	ci left: 1.161346e-01	ci right 1.290861e-01	k: 1225	n:10000
Cons ci ratio: 1.012706e-01	ci left: 1.236626e-01	ci right 1.369535e-01	k: 1302	n:10000
KS ci ratio: 7.186508e-02	ci left: 2.209917e-01	ci right 2.375663e-01	k: 2292	n:10000
ZNF667   10000 perm   2 sec   (5714 perm/sec)   p_kst 2.292000e-01   p_cons 1.302000e-01   p_joint 1.225000e-01

Joint ci ratio: 6.052902e-02	ci left: 1.680770e-01	ci right 1.786181e-01	k: 3466	n:20000
Cons ci ratio: 7.326820e-02	ci left: 1.205939e-01	ci right 1.298153e-01	k: 2503	n:20000
KS ci ratio: 5.086717e-02	ci left: 2.230922e-01	ci right 2.347867e-01	k: 4578	n:20000
ZNF667   20000 perm   4 sec   (5226 perm/sec)   p_kst 2.289000e-01   p_cons 1.251500e-01   p_joint 1.733000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF667.5_1849_20000_0.2289_0.12515_0.1733.png
                gene_name: ZNF667
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 16 percent done.
ZNF700
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.358092e-01	ci left: 7.165494e-02	ci right 8.219310e-02	k: 768	n:10000
Cons ci ratio: 1.996961e-01	ci left: 3.338573e-02	ci right 4.088702e-02	k: 370	n:10000
KS ci ratio: 5.917331e-02	ci left: 2.958849e-01	ci right 3.140289e-01	k: 3049	n:10000
ZNF700   10000 perm   2 sec   (5507 perm/sec)   p_kst 3.049000e-01   p_cons 3.700000e-02   p_joint 7.680000e-02

Joint ci ratio: 7.627586e-02	ci left: 1.121830e-01	ci right 1.211288e-01	k: 2332	n:20000
Cons ci ratio: 1.376830e-01	ci left: 3.626248e-02	ci right 4.167261e-02	k: 778	n:20000
KS ci ratio: 4.187655e-02	ci left: 2.982253e-01	ci right 3.110315e-01	k: 6092	n:20000
ZNF700   20000 perm   4 sec   (5077 perm/sec)   p_kst 3.046000e-01   p_cons 3.890000e-02   p_joint 1.166000e-01

Joint ci ratio: 7.205264e-02	ci left: 8.655523e-02	ci right 9.305780e-02	k: 2693	n:30000
Cons ci ratio: 1.111140e-01	ci left: 3.761587e-02	ci right 4.207381e-02	k: 1194	n:30000
KS ci ratio: 3.417999e-02	ci left: 2.995603e-01	ci right 3.100108e-01	k: 9143	n:30000
ZNF700   30000 perm   6 sec   (4891 perm/sec)   p_kst 3.047667e-01   p_cons 3.980000e-02   p_joint 8.976667e-02

Joint ci ratio: 7.752666e-02	ci left: 5.774126e-02	ci right 6.242285e-02	k: 2402	n:40000
Cons ci ratio: 9.690556e-02	ci left: 3.739241e-02	ci right 4.122484e-02	k: 1571	n:40000
KS ci ratio: 2.967250e-02	ci left: 2.992452e-01	ci right 3.082833e-01	k: 12150	n:40000
ZNF700   40000 perm   8 sec   (4780 perm/sec)   p_kst 3.037500e-01   p_cons 3.927500e-02   p_joint 6.005000e-02

Outputting figure to mutsig2_images.part000000000199/ZNF700.5_2245_40000_0.30375_0.039275_0.06005.png
                gene_name: ZNF700
               theta_stop: 0.097 
                    nperm: 40000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.039 
      ci_cons_bounds_left: 0.037 
     ci_cons_bounds_right: 0.041 
                  p_joint: 0.060 
     ci_joint_bounds_left: 0.058 
    ci_joint_bounds_right: 0.062 

Current progress: 18 percent done.
ZNF721
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.333331e-02	ci left: 5.705552e-01	ci right 5.899980e-01	k: 5803	n:10000
Cons ci ratio: 6.400080e-02	ci left: 2.639885e-01	ci right 2.815440e-01	k: 2727	n:10000
KS ci ratio: 9.962467e-03	ci left: 9.345442e-01	ci right 9.439979e-01	k: 9394	n:10000
ZNF721   10000 perm   2 sec   (5543 perm/sec)   p_kst 9.394000e-01   p_cons 2.727000e-01   p_joint 5.803000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF721.5_2780_10000_0.9394_0.2727_0.5803.png
                gene_name: ZNF721
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 20 percent done.
ZNF746
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.793918e-02	ci left: 6.537398e-01	ci right 6.723652e-01	k: 6631	n:10000
KS ci ratio: 6.403001e-03	ci left: 9.707953e-01	ci right 9.771245e-01	k: 9741	n:10000
ZNF746   10000 perm   2 sec   (5813 perm/sec)   p_kst 9.741000e-01   p_cons 6.631000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000199/ZNF746.5_1966_10000_0.9741_0.6631_1.png
                gene_name: ZNF746
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 22 percent done.
ZNF75A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.009147e-01	ci left: 1.244452e-01	ci right 1.377705e-01	k: 1310	n:10000
Cons ci ratio: 1.516905e-02	ci left: 8.630465e-01	ci right 8.763374e-01	k: 8698	n:10000
KS ci ratio: 1.585526e-01	ci left: 5.301669e-02	ci right 6.224312e-02	k: 575	n:10000
ZNF75A   10000 perm   2 sec   (6149 perm/sec)   p_kst 5.750000e-02   p_cons 8.698000e-01   p_joint 1.310000e-01

Joint ci ratio: 7.010243e-02	ci left: 1.304401e-01	ci right 1.399662e-01	k: 2703	n:20000
Cons ci ratio: 1.069440e-02	ci left: 8.657171e-01	ci right 8.750749e-01	k: 17409	n:20000
KS ci ratio: 1.113489e-01	ci left: 5.509208e-02	ci right 6.163705e-02	k: 1166	n:20000
ZNF75A   20000 perm   4 sec   (5567 perm/sec)   p_kst 5.830000e-02   p_cons 8.704500e-01   p_joint 1.351500e-01

Joint ci ratio: 5.837557e-02	ci left: 1.268391e-01	ci right 1.344992e-01	k: 3919	n:30000
Cons ci ratio: 8.764556e-03	ci left: 8.657370e-01	ci right 8.733913e-01	k: 26088	n:30000
KS ci ratio: 9.079278e-02	ci left: 5.583789e-02	ci right 6.118135e-02	k: 1754	n:30000
ZNF75A   30000 perm   6 sec   (5333 perm/sec)   p_kst 5.846667e-02   p_cons 8.696000e-01   p_joint 1.306333e-01

Outputting figure to mutsig2_images.part000000000199/ZNF75A.5_903_30000_0.058467_0.8696_0.13063.png
                gene_name: ZNF75A
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.058 
        ci_ks_bounds_left: 0.056 
       ci_ks_bounds_right: 0.061 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 24 percent done.
ZNF781
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.937791e-02	ci left: 3.769402e-01	ci right 3.961259e-01	k: 3865	n:10000
Cons ci ratio: 6.450458e-02	ci left: 2.609207e-01	ci right 2.784136e-01	k: 2696	n:10000
KS ci ratio: 5.419274e-02	ci left: 3.340900e-01	ci right 3.528013e-01	k: 3434	n:10000
ZNF781   10000 perm   2 sec   (5730 perm/sec)   p_kst 3.434000e-01   p_cons 2.696000e-01   p_joint 3.865000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF781.5_988_10000_0.3434_0.2696_0.3865.png
                gene_name: ZNF781
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 27 percent done.
ZNF682
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.773228e-02	ci left: 5.091529e-01	ci right 5.288360e-01	k: 5190	n:10000
Cons ci ratio: 4.653285e-02	ci left: 4.053188e-01	ci right 4.247308e-01	k: 4150	n:10000
KS ci ratio: 5.776603e-02	ci left: 3.060990e-01	ci right 3.244087e-01	k: 3152	n:10000
ZNF682   10000 perm   2 sec   (6382 perm/sec)   p_kst 3.152000e-01   p_cons 4.150000e-01   p_joint 5.190000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF682.4_1513_10000_0.3152_0.415_0.519.png
                gene_name: ZNF682
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 29 percent done.
ZNF687
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.187607e-02	ci left: 2.774536e-01	ci right 2.952710e-01	k: 2863	n:10000
Cons ci ratio: 7.561906e-02	ci left: 2.037281e-01	ci right 2.198401e-01	k: 2117	n:10000
KS ci ratio: 5.213117e-02	ci left: 3.516775e-01	ci right 3.706035e-01	k: 3611	n:10000
ZNF687   10000 perm   2 sec   (5283 perm/sec)   p_kst 3.611000e-01   p_cons 2.117000e-01   p_joint 2.863000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF687.4_3746_10000_0.3611_0.2117_0.2863.png
                gene_name: ZNF687
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 31 percent done.
ZNF709
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.084582e-02	ci left: 3.632113e-01	ci right 3.822629e-01	k: 3727	n:10000
Cons ci ratio: 6.990893e-02	ci left: 2.307670e-01	ci right 2.475852e-01	k: 2391	n:10000
KS ci ratio: 4.611379e-02	ci left: 4.097030e-01	ci right 4.291440e-01	k: 4194	n:10000
ZNF709   10000 perm   2 sec   (5978 perm/sec)   p_kst 4.194000e-01   p_cons 2.391000e-01   p_joint 3.727000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF709.4_1942_10000_0.4194_0.2391_0.3727.png
                gene_name: ZNF709
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 33 percent done.
ZNF718
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.208993e-02	ci left: 5.890154e-01	ci right 6.083271e-01	k: 5987	n:10000
Cons ci ratio: 2.432331e-02	ci left: 7.131053e-01	ci right 7.307652e-01	k: 7220	n:10000
KS ci ratio: 5.189480e-02	ci left: 3.537651e-01	ci right 3.727147e-01	k: 3632	n:10000
ZNF718   10000 perm   2 sec   (6421 perm/sec)   p_kst 3.632000e-01   p_cons 7.220000e-01   p_joint 5.987000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF718.4_1453_10000_0.3632_0.722_0.5987.png
                gene_name: ZNF718
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 35 percent done.
ZNF750
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.180359e-02	ci left: 5.933315e-01	ci right 6.126085e-01	k: 6030	n:10000
KS ci ratio: 2.320499e-02	ci left: 7.317890e-01	ci right 7.490707e-01	k: 7405	n:10000
ZNF750   10000 perm   2 sec   (5589 perm/sec)   p_kst 7.405000e-01   p_cons 6.030000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000199/ZNF750.4_2180_10000_0.7405_0.603_1.png
                gene_name: ZNF750
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 37 percent done.
ZNF787
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.967515e-02	ci left: 4.840539e-01	ci right 5.037497e-01	k: 4939	n:10000
Cons ci ratio: 5.917331e-02	ci left: 2.958849e-01	ci right 3.140289e-01	k: 3049	n:10000
KS ci ratio: 3.733377e-02	ci left: 5.144559e-01	ci right 5.341300e-01	k: 5243	n:10000
ZNF787   10000 perm   2 sec   (5539 perm/sec)   p_kst 5.243000e-01   p_cons 3.049000e-01   p_joint 4.939000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF787.4_1160_10000_0.5243_0.3049_0.4939.png
                gene_name: ZNF787
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 39 percent done.
ZNF677
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.601820e-01	ci left: 5.195823e-02	ci right 6.110226e-02	k: 564	n:10000
Cons ci ratio: 2.184266e-01	ci left: 2.778487e-02	ci right 3.469176e-02	k: 311	n:10000
KS ci ratio: 5.403691e-02	ci left: 3.353812e-01	ci right 3.541093e-01	k: 3447	n:10000
ZNF677   10000 perm   2 sec   (6311 perm/sec)   p_kst 3.447000e-01   p_cons 3.110000e-02   p_joint 5.640000e-02

Joint ci ratio: 1.037251e-01	ci left: 6.318274e-02	ci right 7.014389e-02	k: 1332	n:20000
Cons ci ratio: 1.486517e-01	ci left: 3.109744e-02	ci right 3.613934e-02	k: 671	n:20000
KS ci ratio: 3.792404e-02	ci left: 3.415452e-01	ci right 3.547989e-01	k: 6963	n:20000
ZNF677   20000 perm   4 sec   (5523 perm/sec)   p_kst 3.481500e-01   p_cons 3.355000e-02   p_joint 6.660000e-02

Joint ci ratio: 8.337044e-02	ci left: 6.576487e-02	ci right 7.151901e-02	k: 2058	n:30000
Cons ci ratio: 1.250139e-01	ci left: 2.974625e-02	ci right 3.374511e-02	k: 951	n:30000
KS ci ratio: 3.098758e-02	ci left: 3.424421e-01	ci right 3.532541e-01	k: 10435	n:30000
ZNF677   30000 perm   6 sec   (5317 perm/sec)   p_kst 3.478333e-01   p_cons 3.170000e-02   p_joint 6.860000e-02

Joint ci ratio: 8.191495e-02	ci left: 5.192758e-02	ci right 5.638742e-02	k: 2165	n:40000
Cons ci ratio: 1.084127e-01	ci left: 2.993160e-02	ci right 3.338683e-02	k: 1265	n:40000
KS ci ratio: 2.667660e-02	ci left: 3.458726e-01	ci right 3.552491e-01	k: 14022	n:40000
ZNF677   40000 perm   8 sec   (5178 perm/sec)   p_kst 3.505500e-01   p_cons 3.162500e-02   p_joint 5.412500e-02

Joint ci ratio: 7.820897e-02	ci left: 4.596593e-02	ci right 4.972679e-02	k: 2391	n:50000
Cons ci ratio: 9.788146e-02	ci left: 2.955668e-02	ci right 3.261808e-02	k: 1553	n:50000
KS ci ratio: 2.384954e-02	ci left: 3.465759e-01	ci right 3.549614e-01	k: 17538	n:50000
ZNF677   50000 perm   10 sec   (5086 perm/sec)   p_kst 3.507600e-01   p_cons 3.106000e-02   p_joint 4.782000e-02

Outputting figure to mutsig2_images.part000000000199/ZNF677.3_1767_50000_0.35076_0.03106_0.04782.png
                gene_name: ZNF677
               theta_stop: 0.098 
                    nperm: 50000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.031 
      ci_cons_bounds_left: 0.030 
     ci_cons_bounds_right: 0.033 
                  p_joint: 0.048 
     ci_joint_bounds_left: 0.046 
    ci_joint_bounds_right: 0.050 

Current progress: 41 percent done.
ZNF681
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.823030e-02	ci left: 8.145627e-01	ci right 8.296492e-01	k: 8222	n:10000
Cons ci ratio: 1.847911e-02	ci left: 8.104985e-01	ci right 8.257157e-01	k: 8182	n:10000
KS ci ratio: 2.385736e-02	ci left: 7.208794e-01	ci right 7.383866e-01	k: 7297	n:10000
ZNF681   10000 perm   2 sec   (6239 perm/sec)   p_kst 7.297000e-01   p_cons 8.182000e-01   p_joint 8.222000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF681.3_1954_10000_0.7297_0.8182_0.8222.png
                gene_name: ZNF681
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 43 percent done.
ZNF695
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.952882e-03	ci left: 9.460656e-01	ci right 9.546696e-01	k: 9505	n:10000
Cons ci ratio: 1.730686e-02	ci left: 8.295109e-01	ci right 8.440923e-01	k: 8369	n:10000
KS ci ratio: 3.823406e-02	ci left: 5.025508e-01	ci right 5.222420e-01	k: 5124	n:10000
ZNF695   10000 perm   2 sec   (6595 perm/sec)   p_kst 5.124000e-01   p_cons 8.369000e-01   p_joint 9.505000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF695.3_1564_10000_0.5124_0.8369_0.9505.png
                gene_name: ZNF695
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.95 

Current progress: 45 percent done.
ZNF701
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.445442e-03	ci left: 9.405580e-01	ci right 9.495805e-01	k: 9452	n:10000
KS ci ratio: 3.546746e-02	ci left: 5.399856e-01	ci right 5.595854e-01	k: 5498	n:10000
ZNF701   10000 perm   2 sec   (6396 perm/sec)   p_kst 5.498000e-01   p_cons 9.452000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000199/ZNF701.3_1612_10000_0.5498_0.9452_1.png
                gene_name: ZNF701
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 47 percent done.
ZNF71
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.969142e-02	ci left: 6.258780e-01	ci right 6.448431e-01	k: 6354	n:10000
Cons ci ratio: 5.539147e-02	ci left: 3.243584e-01	ci right 3.429386e-01	k: 3336	n:10000
KS ci ratio: 4.409943e-02	ci left: 4.315362e-01	ci right 4.510980e-01	k: 4413	n:10000
ZNF71   10000 perm   2 sec   (6614 perm/sec)   p_kst 4.413000e-01   p_cons 3.336000e-01   p_joint 6.354000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF71.3_1474_10000_0.4413_0.3336_0.6354.png
                gene_name: ZNF71
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.64 

Current progress: 49 percent done.
ZNF714
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.459246e-02	ci left: 2.082639e-01	ci right 2.245016e-01	k: 2163	n:10000
Cons ci ratio: 1.317679e-01	ci left: 7.591905e-02	ci right 8.672633e-02	k: 812	n:10000
KS ci ratio: 3.871119e-02	ci left: 4.963503e-01	ci right 5.160461e-01	k: 5062	n:10000
ZNF714   10000 perm   2 sec   (6113 perm/sec)   p_kst 5.062000e-01   p_cons 8.120000e-02   p_joint 2.163000e-01

Joint ci ratio: 4.785010e-02	ci left: 2.452008e-01	ci right 2.572716e-01	k: 5024	n:20000
Cons ci ratio: 9.500031e-02	ci left: 7.471117e-02	ci right 8.221193e-02	k: 1568	n:20000
KS ci ratio: 2.759483e-02	ci left: 4.952457e-01	ci right 5.091537e-01	k: 10044	n:20000
ZNF714   20000 perm   4 sec   (5536 perm/sec)   p_kst 5.022000e-01   p_cons 7.840000e-02   p_joint 2.512000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF714.3_1677_20000_0.5022_0.0784_0.2512.png
                gene_name: ZNF714
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.078 
      ci_cons_bounds_left: 0.075 
     ci_cons_bounds_right: 0.082 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 51 percent done.
ZNF77
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.633221e-02	ci left: 4.074111e-01	ci right 4.268372e-01	k: 4171	n:10000
Cons ci ratio: 3.064035e-02	ci left: 6.111060e-01	ci right 6.302237e-01	k: 6207	n:10000
KS ci ratio: 6.506595e-02	ci left: 2.575566e-01	ci right 2.749797e-01	k: 2662	n:10000
ZNF77   10000 perm   2 sec   (6460 perm/sec)   p_kst 2.662000e-01   p_cons 6.207000e-01   p_joint 4.171000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF77.3_1654_10000_0.2662_0.6207_0.4171.png
                gene_name: ZNF77
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 53 percent done.
ZNF774
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.316878e-02	ci left: 7.323953e-01	ci right 7.496640e-01	k: 7411	n:10000
Cons ci ratio: 3.021250e-02	ci left: 6.177371e-01	ci right 6.367887e-01	k: 6273	n:10000
KS ci ratio: 4.438670e-02	ci left: 4.283448e-01	ci right 4.478913e-01	k: 4381	n:10000
ZNF774   10000 perm   2 sec   (6097 perm/sec)   p_kst 4.381000e-01   p_cons 6.273000e-01   p_joint 7.411000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF774.3_1464_10000_0.4381_0.6273_0.7411.png
                gene_name: ZNF774
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 55 percent done.
ZNF776
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.298648e-01	ci left: 7.805288e-02	ci right 8.899118e-02	k: 834	n:10000
Cons ci ratio: 1.706816e-01	ci left: 4.580994e-02	ci right 5.445453e-02	k: 500	n:10000
KS ci ratio: 9.772196e-02	ci left: 1.317858e-01	ci right 1.454255e-01	k: 1385	n:10000
ZNF776   10000 perm   2 sec   (6352 perm/sec)   p_kst 1.385000e-01   p_cons 5.000000e-02   p_joint 8.340000e-02

Joint ci ratio: 9.596603e-02	ci left: 7.329309e-02	ci right 8.073044e-02	k: 1539	n:20000
Cons ci ratio: 1.206295e-01	ci left: 4.711722e-02	ci right 5.321441e-02	k: 1002	n:20000
KS ci ratio: 6.774517e-02	ci left: 1.385205e-01	ci right 1.482834e-01	k: 2867	n:20000
ZNF776   20000 perm   4 sec   (5633 perm/sec)   p_kst 1.433500e-01   p_cons 5.010000e-02   p_joint 7.695000e-02

Joint ci ratio: 8.619086e-02	ci left: 6.171330e-02	ci right 6.730473e-02	k: 1934	n:30000
Cons ci ratio: 9.988242e-02	ci left: 4.638913e-02	ci right 5.129872e-02	k: 1464	n:30000
KS ci ratio: 5.581478e-02	ci left: 1.372448e-01	ci right 1.451582e-01	k: 4235	n:30000
ZNF776   30000 perm   6 sec   (5435 perm/sec)   p_kst 1.411667e-01   p_cons 4.880000e-02   p_joint 6.446667e-02

Outputting figure to mutsig2_images.part000000000199/ZNF776.3_1569_30000_0.14117_0.0488_0.064467.png
                gene_name: ZNF776
               theta_stop: 0.100 
                    nperm: 30000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.049 
      ci_cons_bounds_left: 0.046 
     ci_cons_bounds_right: 0.051 
                  p_joint: 0.064 
     ci_joint_bounds_left: 0.062 
    ci_joint_bounds_right: 0.067 

Current progress: 57 percent done.
ZNF777
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.812958e-02	ci left: 1.931834e-01	ci right 2.089911e-01	k: 2010	n:10000
Cons ci ratio: 8.093572e-02	ci left: 1.822537e-01	ci right 1.977273e-01	k: 1899	n:10000
KS ci ratio: 7.134047e-02	ci left: 2.235583e-01	ci right 2.401981e-01	k: 2318	n:10000
ZNF777   10000 perm   2 sec   (5841 perm/sec)   p_kst 2.318000e-01   p_cons 1.899000e-01   p_joint 2.010000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF777.3_2516_10000_0.2318_0.1899_0.201.png
                gene_name: ZNF777
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 59 percent done.
ZNF778
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.651309e-02	ci left: 6.769010e-01	ci right 6.951905e-01	k: 6861	n:10000
Cons ci ratio: 4.598151e-02	ci left: 4.110981e-01	ci right 4.305480e-01	k: 4208	n:10000
KS ci ratio: 2.983895e-02	ci left: 6.235661e-01	ci right 6.425563e-01	k: 6331	n:10000
ZNF778   10000 perm   2 sec   (6474 perm/sec)   p_kst 6.331000e-01   p_cons 4.208000e-01   p_joint 6.861000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF778.3_2210_10000_0.6331_0.4208_0.6861.png
                gene_name: ZNF778
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 61 percent done.
ZNF780B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.861618e-02	ci left: 3.843054e-01	ci right 4.035564e-01	k: 3939	n:10000
Cons ci ratio: 4.383219e-02	ci left: 4.345286e-01	ci right 4.541039e-01	k: 4443	n:10000
KS ci ratio: 7.759865e-02	ci left: 1.953508e-01	ci right 2.112224e-01	k: 2032	n:10000
ZNF780B   10000 perm   2 sec   (6121 perm/sec)   p_kst 2.032000e-01   p_cons 4.443000e-01   p_joint 3.939000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF780B.3_2518_10000_0.2032_0.4443_0.3939.png
                gene_name: ZNF780B
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 63 percent done.
ZNF782
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.935905e-02	ci left: 4.880521e-01	ci right 5.077491e-01	k: 4979	n:10000
Cons ci ratio: 4.852541e-03	ci left: 9.824212e-01	ci right 9.872903e-01	k: 9850	n:10000
KS ci ratio: 5.555378e-02	ci left: 3.230678e-01	ci right 3.416300e-01	k: 3323	n:10000
ZNF782   10000 perm   1 sec   (6851 perm/sec)   p_kst 3.323000e-01   p_cons 9.850000e-01   p_joint 4.979000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF782.3_2116_10000_0.3323_0.985_0.4979.png
                gene_name: ZNF782
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 65 percent done.
ZNF79
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.343015e-01	ci left: 7.320496e-02	ci right 8.384211e-02	k: 784	n:10000
Cons ci ratio: 2.079888e-01	ci left: 3.072413e-02	ci right 3.795045e-02	k: 342	n:10000
KS ci ratio: 2.588110e-02	ci left: 6.872816e-01	ci right 7.054039e-01	k: 6964	n:10000
ZNF79   10000 perm   2 sec   (6411 perm/sec)   p_kst 6.964000e-01   p_cons 3.420000e-02   p_joint 7.840000e-02

Joint ci ratio: 6.572483e-02	ci left: 1.460145e-01	ci right 1.559872e-01	k: 3019	n:20000
Cons ci ratio: 1.474078e-01	ci left: 3.162770e-02	ci right 3.670891e-02	k: 682	n:20000
KS ci ratio: 1.832503e-02	ci left: 6.894211e-01	ci right 7.022220e-01	k: 13917	n:20000
ZNF79   20000 perm   3 sec   (5722 perm/sec)   p_kst 6.958500e-01   p_cons 3.410000e-02   p_joint 1.509500e-01

Joint ci ratio: 6.072327e-02	ci left: 1.182508e-01	ci right 1.256893e-01	k: 3658	n:30000
Cons ci ratio: 1.203893e-01	ci left: 3.207488e-02	ci right 3.621597e-02	k: 1023	n:30000
KS ci ratio: 1.488887e-02	ci left: 6.927020e-01	ci right 7.031264e-01	k: 20938	n:30000
ZNF79   30000 perm   6 sec   (5420 perm/sec)   p_kst 6.979333e-01   p_cons 3.410000e-02   p_joint 1.219333e-01

Joint ci ratio: 4.850729e-02	ci left: 1.369350e-01	ci right 1.437673e-01	k: 5613	n:40000
Cons ci ratio: 1.050330e-01	ci left: 3.187989e-02	ci right 3.543823e-02	k: 1345	n:40000
KS ci ratio: 1.290745e-02	ci left: 6.929718e-01	ci right 7.019995e-01	k: 27900	n:40000
ZNF79   40000 perm   8 sec   (5267 perm/sec)   p_kst 6.975000e-01   p_cons 3.362500e-02   p_joint 1.403250e-01

Joint ci ratio: 4.567861e-02	ci left: 1.254398e-01	ci right 1.313235e-01	k: 6418	n:50000
Cons ci ratio: 9.439546e-02	ci left: 3.176404e-02	ci right 3.493044e-02	k: 1666	n:50000
KS ci ratio: 1.154973e-02	ci left: 6.932717e-01	ci right 7.013454e-01	k: 34866	n:50000
ZNF79   50000 perm   10 sec   (5135 perm/sec)   p_kst 6.973200e-01   p_cons 3.332000e-02   p_joint 1.283600e-01

Outputting figure to mutsig2_images.part000000000199/ZNF79.3_1517_50000_0.69732_0.03332_0.12836.png
                gene_name: ZNF79
               theta_stop: 0.094 
                    nperm: 50000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.033 
      ci_cons_bounds_left: 0.032 
     ci_cons_bounds_right: 0.035 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 67 percent done.
ZNF791
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.849127e-02	ci left: 6.448846e-01	ci right 6.636255e-01	k: 6543	n:10000
Cons ci ratio: 5.274675e-02	ci left: 3.463103e-01	ci right 3.651738e-01	k: 3557	n:10000
KS ci ratio: 2.735981e-02	ci left: 6.631019e-01	ci right 6.815976e-01	k: 6724	n:10000
ZNF791   10000 perm   1 sec   (6782 perm/sec)   p_kst 6.724000e-01   p_cons 3.557000e-01   p_joint 6.543000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF791.3_1747_10000_0.6724_0.3557_0.6543.png
                gene_name: ZNF791
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 69 percent done.
ZNF668
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.243716e-02	ci left: 9.027822e-01	ci right 9.141786e-01	k: 9086	n:10000
KS ci ratio: 1.082595e-02	ci left: 9.239968e-01	ci right 9.341516e-01	k: 9292	n:10000
ZNF668   10000 perm   2 sec   (5650 perm/sec)   p_kst 9.292000e-01   p_cons 9.086000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000199/ZNF668.2_1941_10000_0.9292_0.9086_1.png
                gene_name: ZNF668
               theta_stop: 0.012 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
ZNF671
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.289569e-02	ci left: 8.964156e-01	ci right 9.081488e-01	k: 9024	n:10000
KS ci ratio: 7.113958e-03	ci left: 9.645717e-01	ci right 9.715522e-01	k: 9682	n:10000
ZNF671   10000 perm   2 sec   (6574 perm/sec)   p_kst 9.682000e-01   p_cons 9.024000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000199/ZNF671.2_1621_10000_0.9682_0.9024_1.png
                gene_name: ZNF671
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
ZNF680
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.350532e-02	ci left: 4.382197e-01	ci right 4.578106e-01	k: 4480	n:10000
Cons ci ratio: 6.025129e-02	ci left: 2.883517e-01	ci right 3.063665e-01	k: 2973	n:10000
KS ci ratio: 3.021250e-02	ci left: 6.177371e-01	ci right 6.367887e-01	k: 6273	n:10000
ZNF680   10000 perm   2 sec   (6487 perm/sec)   p_kst 6.273000e-01   p_cons 2.973000e-01   p_joint 4.480000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF680.2_1732_10000_0.6273_0.2973_0.448.png
                gene_name: ZNF680
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 76 percent done.
ZNF684
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.181098e-02	ci left: 7.551466e-01	ci right 7.718996e-01	k: 7636	n:10000
Cons ci ratio: 2.445056e-02	ci left: 7.109857e-01	ci right 7.286861e-01	k: 7199	n:10000
KS ci ratio: 7.700481e-02	ci left: 1.978142e-01	ci right 2.137576e-01	k: 2057	n:10000
ZNF684   10000 perm   2 sec   (5941 perm/sec)   p_kst 2.057000e-01   p_cons 7.199000e-01   p_joint 7.636000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF684.2_1153_10000_0.2057_0.7199_0.7636.png
                gene_name: ZNF684
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 78 percent done.
ZNF692
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.593006e-02	ci left: 6.864752e-01	ci right 7.046108e-01	k: 6956	n:10000
KS ci ratio: 1.904803e-02	ci left: 8.011560e-01	ci right 8.166636e-01	k: 8090	n:10000
ZNF692   10000 perm   2 sec   (6602 perm/sec)   p_kst 8.090000e-01   p_cons 6.956000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000199/ZNF692.2_1623_10000_0.809_0.6956_1.png
                gene_name: ZNF692
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
ZNF696
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.641595e-02	ci left: 3.163183e-01	ci right 3.347835e-01	k: 3255	n:10000
Cons ci ratio: 4.398338e-02	ci left: 4.328329e-01	ci right 4.524006e-01	k: 4426	n:10000
KS ci ratio: 1.362898e-01	ci left: 7.117069e-02	ci right 8.167765e-02	k: 763	n:10000
ZNF696   10000 perm   1 sec   (7152 perm/sec)   p_kst 7.630000e-02   p_cons 4.426000e-01   p_joint 3.255000e-01

Joint ci ratio: 6.917347e-02	ci left: 1.335435e-01	ci right 1.431619e-01	k: 2766	n:20000
Cons ci ratio: 3.106585e-02	ci left: 4.362990e-01	ci right 4.501175e-01	k: 8864	n:20000
KS ci ratio: 9.877348e-02	ci left: 6.938317e-02	ci right 7.664156e-02	k: 1459	n:20000
ZNF696   20000 perm   3 sec   (6380 perm/sec)   p_kst 7.295000e-02   p_cons 4.432000e-01   p_joint 1.383000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF696.2_1133_20000_0.07295_0.4432_0.1383.png
                gene_name: ZNF696
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.073 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.077 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 82 percent done.
ZNF704
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.994737e-02	ci left: 2.305695e-01	ci right 2.473828e-01	k: 2389	n:10000
Cons ci ratio: 2.255332e-02	ci left: 7.427054e-01	ci right 7.597480e-01	k: 7513	n:10000
KS ci ratio: 1.260329e-01	ci left: 8.261521e-02	ci right 9.382602e-02	k: 881	n:10000
ZNF704   10000 perm   1 sec   (6902 perm/sec)   p_kst 8.810000e-02   p_cons 7.513000e-01   p_joint 2.389000e-01

Joint ci ratio: 4.837726e-02	ci left: 2.411343e-01	ci right 2.531393e-01	k: 4942	n:20000
Cons ci ratio: 1.599467e-02	ci left: 7.441394e-01	ci right 7.561878e-01	k: 15004	n:20000
KS ci ratio: 8.843498e-02	ci left: 8.548063e-02	ci right 9.343920e-02	k: 1788	n:20000
ZNF704   20000 perm   3 sec   (6101 perm/sec)   p_kst 8.940000e-02   p_cons 7.502000e-01   p_joint 2.471000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF704.2_1271_20000_0.0894_0.7502_0.2471.png
                gene_name: ZNF704
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.089 
        ci_ks_bounds_left: 0.085 
       ci_ks_bounds_right: 0.093 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 84 percent done.
ZNF705A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.554127e-02	ci left: 3.231670e-01	ci right 3.417307e-01	k: 3324	n:10000
Cons ci ratio: 4.211635e-02	ci left: 4.542871e-01	ci right 4.739338e-01	k: 4641	n:10000
KS ci ratio: 7.820259e-02	ci left: 1.928879e-01	ci right 2.086868e-01	k: 2007	n:10000
ZNF705A   10000 perm   1 sec   (7138 perm/sec)   p_kst 2.007000e-01   p_cons 4.641000e-01   p_joint 3.324000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF705A.2_923_10000_0.2007_0.4641_0.3324.png
                gene_name: ZNF705A
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 86 percent done.
ZNF74
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.411493e-01	ci left: 6.652534e-02	ci right 7.672591e-02	k: 715	n:10000
Cons ci ratio: 6.635571e-02	ci left: 2.500393e-01	ci right 2.673015e-01	k: 2586	n:10000
KS ci ratio: 1.635851e-01	ci left: 4.984277e-02	ci right 5.881908e-02	k: 542	n:10000
ZNF74   10000 perm   1 sec   (6722 perm/sec)   p_kst 5.420000e-02   p_cons 2.586000e-01   p_joint 7.150000e-02

Joint ci ratio: 4.479819e-02	ci left: 2.706070e-01	ci right 2.830579e-01	k: 5536	n:20000
Cons ci ratio: 4.858616e-02	ci left: 2.395476e-01	ci right 2.515264e-01	k: 4910	n:20000
KS ci ratio: 1.165281e-01	ci left: 5.042141e-02	ci right 5.670918e-02	k: 1070	n:20000
ZNF74   20000 perm   3 sec   (5998 perm/sec)   p_kst 5.350000e-02   p_cons 2.455000e-01   p_joint 2.768000e-01

Joint ci ratio: 3.377829e-02	ci left: 3.045694e-01	ci right 3.150675e-01	k: 9294	n:30000
Cons ci ratio: 3.868398e-02	ci left: 2.500420e-01	ci right 2.599388e-01	k: 7649	n:30000
KS ci ratio: 9.541246e-02	ci left: 5.071964e-02	ci right 5.583398e-02	k: 1597	n:30000
ZNF74   30000 perm   5 sec   (5743 perm/sec)   p_kst 5.323333e-02   p_cons 2.549667e-01   p_joint 3.098000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF74.2_1955_30000_0.053233_0.25497_0.3098.png
                gene_name: ZNF74
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.053 
        ci_ks_bounds_left: 0.051 
       ci_ks_bounds_right: 0.056 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 88 percent done.
ZNF75D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.377012e-02	ci left: 4.352269e-01	ci right 4.548052e-01	k: 4450	n:10000
Cons ci ratio: 7.166236e-02	ci left: 2.219788e-01	ci right 2.385786e-01	k: 2302	n:10000
KS ci ratio: 2.608320e-02	ci left: 6.839552e-01	ci right 7.021322e-01	k: 6931	n:10000
ZNF75D   10000 perm   1 sec   (6676 perm/sec)   p_kst 6.931000e-01   p_cons 2.302000e-01   p_joint 4.450000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF75D.2_1553_10000_0.6931_0.2302_0.445.png
                gene_name: ZNF75D
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.45 

Current progress: 90 percent done.
ZNF763
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.109383e-02	ci left: 1.816632e-01	ci right 1.971182e-01	k: 1893	n:10000
Cons ci ratio: 6.820443e-02	ci left: 2.397579e-01	ci right 2.567890e-01	k: 2482	n:10000
KS ci ratio: 7.684031e-02	ci left: 1.985040e-01	ci right 2.144674e-01	k: 2064	n:10000
ZNF763   10000 perm   1 sec   (6745 perm/sec)   p_kst 2.064000e-01   p_cons 2.482000e-01   p_joint 1.893000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF763.2_1210_10000_0.2064_0.2482_0.1893.png
                gene_name: ZNF763
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 92 percent done.
ZNF768
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.583828e-02	ci left: 6.879873e-01	ci right 7.060978e-01	k: 6971	n:10000
Cons ci ratio: 2.659312e-02	ci left: 6.755913e-01	ci right 6.939010e-01	k: 6848	n:10000
KS ci ratio: 6.599437e-02	ci left: 2.521161e-01	ci right 2.694235e-01	k: 2607	n:10000
ZNF768   10000 perm   1 sec   (6905 perm/sec)   p_kst 2.607000e-01   p_cons 6.848000e-01   p_joint 6.971000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF768.2_1631_10000_0.2607_0.6848_0.6971.png
                gene_name: ZNF768
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 94 percent done.
ZNF773
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.264382e-02	ci left: 7.411889e-01	ci right 7.582654e-01	k: 7498	n:10000
Cons ci ratio: 2.932725e-02	ci left: 6.316085e-01	ci right 6.505093e-01	k: 6411	n:10000
KS ci ratio: 1.990030e-02	ci left: 7.870536e-01	ci right 8.029742e-01	k: 7951	n:10000
ZNF773   10000 perm   1 sec   (6857 perm/sec)   p_kst 7.951000e-01   p_cons 6.411000e-01   p_joint 7.498000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF773.2_1345_10000_0.7951_0.6411_0.7498.png
                gene_name: ZNF773
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 96 percent done.
ZNF785
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.892703e-02	ci left: 6.379438e-01	ci right 6.567703e-01	k: 6474	n:10000
KS ci ratio: 3.210996e-02	ci left: 5.887143e-01	ci right 6.080283e-01	k: 5984	n:10000
ZNF785   10000 perm   1 sec   (7522 perm/sec)   p_kst 5.984000e-01   p_cons 6.474000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000199/ZNF785.2_1230_10000_0.5984_0.6474_1.png
                gene_name: ZNF785
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
ZNF790
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.883601e-03	ci left: 9.354766e-01	ci right 9.448650e-01	k: 9403	n:10000
KS ci ratio: 8.249378e-02	ci left: 1.765467e-01	ci right 1.918378e-01	k: 1841	n:10000
ZNF790   10000 perm   2 sec   (5771 perm/sec)   p_kst 1.841000e-01   p_cons 9.403000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000199/ZNF790.2_1927_10000_0.1841_0.9403_1.png
                gene_name: ZNF790
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000199
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 199 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1703>
Subject: Job 8004731: <scatter_227015> Done

Job <scatter_227015> was submitted from host <node457> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1703>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000200> was used as the working directory.
Started at Sun Nov 11 15:27:41 2012
Results reported at Sun Nov 11 15:35:09 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000200.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000200.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 200  -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000200.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    485.97 sec.
    Max Memory :      4701 MB
    Max Swap   :      7086 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
-whichjob
200
-i
LUSC
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './LUSC.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 200
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "LUSC"
Loading coverage... 

The following 768 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'AG2'              [     0]
    'AGAP4'            [     0]
    'AGBL3'            [     0]
    'AMY1A'            [0.1465]
    'AMY1B'            [0.1465]
    'AMY1C'            [0.1465]
    'ANKRD18A'         [0.1322]
    'ANKRD20A2'        [0.0827]
    'ANKRD20A3'        [0.1556]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD43'          [0.2170]
    'ANKRD58'          [0.1089]
    'ANKRD9'           [0.1052]
    'ANXA8'            [     0]
    'ANXA8L1'          [     0]
    'ANXA8L2'          [0.0618]
    'APLN'             [     0]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [     0]
    'ARL5C'            [     0]
    'ARX'              [0.1451]
    'ASAH2B'           [0.1714]
    'ASCL2'            [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1738]
    'ATXN7L3B'         [     0]
    'B3GALT6'          [0.1710]
    'BBC3'             [0.2352]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [     0]
    'BHLHA9'           [     0]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.0968]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf95'         [0.2253]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2261]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf74'         [0.1301]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1434]
    'C17orf96'         [     0]
    'C17orf97'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0867]
    'C19orf24'         [0.0102]
    'C19orf25'         [0.0677]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf76'         [0.1647]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [0.1886]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf144'        [0.2483]
    'C20orf173'        [     0]
    'C20orf201'        [0.1997]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1178]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4A'           [0.2369]
    'C2CD4B'           [0.0360]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0532]
    'C2orf27B'         [0.0796]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [     0]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1166]
    'C4B'              [0.1166]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0462]
    'C8orf48'          [     0]
    'C8orf55'          [0.1784]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.1719]
    'CBWD5'            [0.2317]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC160'          [0.2425]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1473]
    'CCDC85C'          [     0]
    'CCL3L1'           [     0]
    'CCL3L3'           [     0]
    'CCL4L1'           [0.1631]
    'CCL4L2'           [0.1631]
    'CD24'             [     0]
    'CDC42EP5'         [     0]
    'CDHR4'            [0.1755]
    'CDKN1C'           [0.1404]
    'CDR2L'            [0.2434]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2355]
    'CFC1'             [0.1323]
    'CFC1B'            [0.1323]
    'CHADL'            [0.0136]
    'CHIC1'            [0.1768]
    'CHST7'            [0.2278]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN23'           [0.2442]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'CPSF4L'           [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CT45A1'           [0.1069]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0036]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0288]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [0.1429]
    'CTF1'             [0.2166]
    'CTRB1'            [0.2405]
    'CTRB2'            [0.2440]
    'CTU1'             [0.0465]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'CYS1'             [0.1406]
    'DACT2'            [     0]
    'DACT3'            [0.1383]
    'DAZ1'             [     0]
    'DAZ2'             [0.0385]
    'DAZ3'             [0.0505]
    'DAZ4'             [0.0282]
    'DDT'              [0.2144]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1872]
    'DEFB105B'         [0.1872]
    'DEFB107A'         [0.0812]
    'DEFB107B'         [0.0812]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DKFZP781G0119'    [     0]
    'DMRTC1'           [0.0780]
    'DMRTC1B'          [0.0780]
    'DNAH12'           [0.1440]
    'DNAH14'           [0.0512]
    'DNAH6'            [0.1047]
    'DOC2B'            [     0]
    'DPCR1'            [0.2040]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [0.0262]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0751]
    'EIF3CL'           [0.0751]
    'ELFN1'            [0.0086]
    'EML6'             [     0]
    'EXOSC6'           [0.0969]
    'EYS'              [0.1907]
    'F8A1'             [     0]
    'F8A2'             [0.0508]
    'F8A3'             [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM163B'          [0.0348]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1866]
    'FAM180B'          [     0]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200A'          [0.1236]
    'FAM200B'          [     0]
    'FAM20C'           [0.2175]
    'FAM22A'           [0.1885]
    'FAM22D'           [0.2396]
    'FAM23A'           [0.0708]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.2081]
    'FAM47E'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2031]
    'FAM75A2'          [0.2031]
    'FAM75A3'          [0.1100]
    'FAM75A5'          [0.0563]
    'FAM75A7'          [0.0563]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.0944]
    'FLJ25363'         [     0]
    'FLJ36031'         [0.2384]
    'FLJ43859'         [0.1773]
    'FLJ44082'         [0.1383]
    'FLJ44606'         [     0]
    'FOXD1'            [0.2451]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L6'          [0.0824]
    'FOXI2'            [0.2108]
    'FOXI3'            [0.1168]
    'FRAT1'            [0.1826]
    'FRAT2'            [0.0872]
    'FREM3'            [     0]
    'FRG2'             [0.1030]
    'FRG2C'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2296]
    'GAGE12B'          [     0]
    'GAGE12C'          [     0]
    'GAGE12D'          [     0]
    'GAGE12E'          [     0]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [     0]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.2325]
    'GAGE2A'           [0.0769]
    'GAGE2B'           [0.2044]
    'GAGE2C'           [0.0511]
    'GAGE2D'           [     0]
    'GAGE2E'           [0.1746]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.1735]
    'GATSL1'           [     0]
    'GATSL2'           [0.0769]
    'GCNT7'            [     0]
    'GDF1'             [0.0536]
    'GFRA4'            [0.1477]
    'GIYD1'            [0.1495]
    'GIYD2'            [0.1495]
    'GJD3'             [0.1864]
    'GLTSCR1'          [0.2387]
    'GLYATL3'          [     0]
    'GOLGA6B'          [0.2211]
    'GOLGA6L1'         [0.0230]
    'GOLGA6L10'        [0.0080]
    'GOLGA6L6'         [0.0141]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1538]
    'GOLGA8B'          [0.1561]
    'GP1BB'            [0.0230]
    'GPR144'           [     0]
    'GPR44'            [0.2469]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1683]
    'GSC'              [0.2185]
    'GSC2'             [0.2007]
    'GSTT1'            [     0]
    'GSTT2'            [0.2303]
    'GSTT2B'           [0.1582]
    'GTF2H2'           [0.1208]
    'H2AFB2'           [     0]
    'H2BFM'            [0.0371]
    'HBZ'              [0.2255]
    'HEATR7A'          [0.2401]
    'HES2'             [0.2026]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPB6'            [     0]
    'ID4'              [0.1637]
    'IFFO2'            [0.0875]
    'IGFN1'            [0.2418]
    'IKBKG'            [0.1908]
    'IL11'             [0.2364]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [     0]
    'KBTBD13'          [0.1745]
    'KCP'              [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [0.0125]
    'KIF26A'           [0.2171]
    'KILLIN'           [     0]
    'KISS1R'           [0.1465]
    'KLF2'             [0.2024]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-2'         [     0]
    'KRTAP2-4'         [     0]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP7-1'         [     0]
    'LCE3B'            [     0]
    'LCE3C'            [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [0.1090]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [0.0631]
    'LOC100130274'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [0.2157]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0489]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [0.1608]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402778'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [     0]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [0.0284]
    'LOC653545'        [0.0284]
    'LOC653548'        [0.0284]
    'LOC728392'        [     0]
    'LOC728410'        [0.0320]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1839]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0094]
    'LRRC37A'          [0.0734]
    'LRRC69'           [     0]
    'LUZP6'            [     0]
    'LYL1'             [0.1564]
    'MAFA'             [0.1939]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0599]
    'MAGEA9B'          [0.0599]
    'MAGED4'           [     0]
    'MAGED4B'          [     0]
    'MAP6D1'           [0.2085]
    'MARVELD1'         [     0]
    'MBD3L2'           [     0]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [0.0708]
    'MBOAT4'           [     0]
    'MESP1'            [0.1584]
    'METTL11B'         [     0]
    'MMP23B'           [     0]
    'MORN2'            [     0]
    'MRC1'             [0.2025]
    'MRC1L1'           [0.2025]
    'MRGPRG'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.1527]
    'NANOS1'           [0.1994]
    'NAT14'            [0.0538]
    'NBPF11'           [0.0489]
    'NBPF4'            [     0]
    'NBPF6'            [0.0522]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-4'           [0.2466]
    'NKX2-6'           [     0]
    'NKX2-8'           [0.0814]
    'NOTO'             [     0]
    'NPIPL3'           [0.1178]
    'NXF2'             [0.1241]
    'NXF2B'            [0.1241]
    'NYX'              [0.2245]
    'OLIG1'            [0.2112]
    'ONECUT3'          [0.0559]
    'OR2T35'           [0.2095]
    'OR4C45'           [0.0656]
    'OR4F16'           [     0]
    'OR4F21'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'PABPC1L2A'        [0.0370]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [0.1731]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0576]
    'PDF'              [0.2385]
    'PET117'           [     0]
    'PGA4'             [     0]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2313]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLGLB1'           [0.2025]
    'PLGLB2'           [0.2025]
    'PNMA6A'           [     0]
    'PNRC2'            [0.0755]
    'POLR2J3'          [0.1507]
    'POM121L2'         [     0]
    'POTEB'            [0.1701]
    'POTED'            [0.0383]
    'PPIAL4A'          [0.1259]
    'PPIAL4B'          [0.1259]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PRAMEF15'         [     0]
    'PRAMEF20'         [0.1230]
    'PRAMEF21'         [0.1230]
    'PRAMEF22'         [0.1880]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0218]
    'PRAMEF6'          [0.1714]
    'PRAMEF7'          [0.2290]
    'PRAMEF8'          [0.1527]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.2206]
    'PTPN20A'          [0.0800]
    'PTPN20B'          [0.0800]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1290]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0866]
    'RBMY1B'           [0.1001]
    'RBMY1D'           [0.1001]
    'RBMY1E'           [0.0821]
    'RBMY1F'           [0.0338]
    'RBMY1J'           [0.0338]
    'RESP18'           [     0]
    'REXO1L1'          [0.0688]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1513]
    'RGPD2'            [0.1507]
    'RGPD5'            [0.1699]
    'RGPD6'            [     0]
    'RGS9BP'           [0.2378]
    'RGSL1'            [     0]
    'RHOXF2'           [0.2245]
    'RHOXF2B'          [0.2245]
    'RIMBP3'           [0.2263]
    'RIMBP3B'          [0.0159]
    'RIMBP3C'          [0.0159]
    'RNF187'           [     0]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.2459]
    'SAP25'            [     0]
    'SCAND1'           [0.2228]
    'SCT'              [     0]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [     0]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS13A'          [0.1052]
    'SFT2D3'           [     0]
    'SH3D20'           [0.1272]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [0.1937]
    'SLC25A29'         [0.1678]
    'SLFN14'           [     0]
    'SMN1'             [0.0303]
    'SMN2'             [0.0297]
    'SP9'              [0.1041]
    'SPACA5'           [0.1035]
    'SPACA5B'          [0.1035]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.1155]
    'SPDYE2L'          [0.1155]
    'SPINT3'           [     0]
    'SPRN'             [     0]
    'SRRM5'            [0.0844]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.0953]
    'SSX4B'            [0.0953]
    'STAG3L1'          [0.0744]
    'STAG3L3'          [0.2030]
    'STARD9'           [     0]
    'SULT1A3'          [0.0151]
    'SULT1A4'          [0.0151]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TBC1D3'           [0.1582]
    'TBC1D3C'          [     0]
    'TBC1D3F'          [0.1582]
    'TBC1D3G'          [0.2444]
    'TBC1D3H'          [0.0106]
    'TCF15'            [0.0129]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM121'          [0.2149]
    'TMEM129'          [0.1997]
    'TMEM132C'         [0.0776]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1794]
    'TMEM194B'         [     0]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [0.0207]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0755]
    'TSPY4'            [0.0931]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [     0]
    'TXNRD3'           [     0]
    'UBE2QL1'          [     0]
    'UNC80'            [0.0867]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0322]
    'USP27X'           [0.1217]
    'UTF1'             [     0]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA5B1'           [     0]
    'VWA5B2'           [     0]
    'VWDE'             [     0]
    'WASH1'            [0.1258]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED3'            [     0]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZFP62'            [0.0092]
    'ZFP92'            [     0]
    'ZG16'             [     0]
    'ZNF26'            [     0]
    'ZNF389'           [0.1426]
    'ZNF444'           [0.1924]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2304]
    'ZNF580'           [0.2121]
    'ZNF703'           [0.2233]
    'ZNF705G'          [     0]
    'ZNF717'           [     0]
    'ZNF771'           [0.1636]
    'ZNF826'           [     0]
    'ZNF837'           [     0]
    'ZNF84'            [     0]
    'ZNF843'           [     0]
    'ZNF853'           [     0]
    'ZNF879'           [0.0757]
    'ZSCAN23'          [0.2283]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 768 genes have very low coverage and are being omitted.
Loading gene list... 

The following 768 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGAP4'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf25'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf144'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4A'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC160'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDR2L'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CHST7'
    'CISD3'
    'CITED4'
    'CLDN23'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM22A'
    'FAM22D'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A3'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLTSCR1'
    'GLYATL3'
    'GOLGA6B'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR44'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSC'
    'GSC2'
    'GSTT1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB2'
    'H2BFM'
    'HBZ'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'ID4'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL11'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KIF26A'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE3B'
    'LCE3C'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'LYL1'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-4'
    'NKX2-6'
    'NKX2-8'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'NYX'
    'OLIG1'
    'ONECUT3'
    'OR2T35'
    'OR4C45'
    'OR4F16'
    'OR4F21'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLGLB1'
    'PLGLB2'
    'PNMA6A'
    'PNRC2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'POTED'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGS9BP'
    'RGSL1'
    'RHOXF2'
    'RHOXF2B'
    'RIMBP3'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCAND1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A29'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STAG3L3'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM121'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF580'
    'ZNF703'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 30 double-null mutations.
Removed assignments of their 32 partner-null mutations; these will be omitted from analysis.

                               0      1      2     3      4     5   6      TOTAL  
           Frame_Shift_Del     5      0      0     0      0   534   1        540  
           Frame_Shift_Ins     0      0      0     0      0   141   0        141  
              In_Frame_Del     0      0      0     0      0    98   0         98  
              In_Frame_Ins     0      0      0     0      0    20   0         20  
                  Missense     0    161    445    48     96   102   2        854  
         Missense_Mutation     0  12827  16336  3263   8765     0   0      41191  
         Nonsense_Mutation    25      0      0     0      0  3567  23       3615  
          Nonstop_Mutation     1      0      0     0      0    58   0         59  
                    Silent     0   5007   6593   668   2929     0   0      15197  
               Splice_Site     1      0      0     0      0  1157   4       1162  
    Translation_Start_Site     0      4     11     0      4     4   0         23  

                     TOTAL    32  17999  23385  3979  11794  5681  30      62900  

0 unassigned       
1 Tp*C->mut        
2 (A/C/G)p*C->(A/T)
3 (A/C/G)p*C->G    
4 A->mut           
5 indel+null       
6 double_null      
Mutations not in gene set:
           AGAP4: [1]
           AMY1A: [1]
         ANKRD31: [1]
         ANKRD43: [1]
         ANKRD58: [1]
           ANXA8: [1]
          ASAH2B: [1]
            BOP1: [1]
       C10orf110: [1]
        C11orf95: [1]
        C14orf48: [1]
        C15orf37: [1]
        C19orf76: [1]
        C1orf170: [1]
        C1orf200: [1]
        C1orf212: [1]
        C1orf220: [1]
       C20orf144: [1]
       C21orf128: [1]
         C2orf52: [1]
         C3orf65: [1]
        C6orf227: [1]
           CAPN8: [1]
         CCDC160: [1]
          CDC14C: [1]
        CDC42EP5: [1]
           CEBPA: [1]
          CT47A6: [1]
           CTSL3: [1]
            CTU1: [1]
          DNAH14: [1]
           DPCR1: [1]
          FAM45B: [1]
         FAM75A2: [1]
           FBLL1: [1]
          FIGNL2: [1]
        FLJ10213: [1]
           FOXD1: [1]
           FRAT2: [1]
           GFRA4: [1]
         GLTSCR1: [1]
         GOLGA8G: [1]
            GSC2: [1]
           GSTT2: [1]
          HGC6.3: [1]
             ID4: [1]
          IGF2AS: [1]
         KBTBD11: [1]
         KBTBD13: [1]
         KIR3DX1: [1]
            KLF2: [1]
        KRTAP2-4: [1]
    LOC100132247: [1]
       LOC283922: [1]
       LOC338651: [1]
       LOC653544: [1]
         LRRC37A: [1]
           LUZP6: [1]
            NAIP: [1]
      NCRNA00207: [1]
          PHOX2A: [1]
          PMS2L3: [1]
          PTENP1: [1]
           RGPD1: [1]
          RGS9BP: [1]
          RIMBP3: [1]
         RUNDC2C: [1]
           SSC5D: [1]
            SSX4: [1]
            SSX6: [1]
          TBC1D3: [1]
           TCF15: [1]
         TMEM121: [1]
         TMEM160: [1]
           TSPY3: [1]
            VNN3: [1]
          VWA5B2: [1]
          WASH5P: [1]
          ZNF444: [1]
         ZSCAN23: [1]
          ZSWIM6: [1]
           ADAM6: [2]
       ANKRD20A3: [2]
         B3GALT6: [2]
            BBC3: [2]
          BTN2A3: [2]
        C12orf32: [2]
        C17orf97: [2]
             C4A: [2]
           CFC1B: [2]
          CTAGE6: [2]
          FAM20C: [2]
          FAM22A: [2]
          FAM38A: [2]
        FLJ33360: [2]
           FOXI2: [2]
            GDF1: [2]
         GOLGA8E: [2]
         HEATR7A: [2]
           IGLL3: [2]
          NKX2-4: [2]
          OR2T35: [2]
           POTED: [2]
         PRAMEF6: [2]
         PRAMEF8: [2]
          PSAPL1: [2]
         REXO1L1: [2]
            RTL1: [2]
     SYS1-DBNDD2: [2]
            TCL6: [2]
         ATXN7L1: [3]
         C10orf4: [3]
       C20orf200: [3]
        C22orf30: [3]
          EIF3CL: [3]
        FLJ40504: [3]
         GOLGA6B: [3]
            HSN2: [3]
       LOC200030: [3]
           OR1D4: [3]
         RBMY1A1: [3]
       SERPINA13: [3]
          ZNF703: [3]
           GP1BA: [4]
            MRC1: [4]
             NYX: [4]
          ZNF271: [4]
          ZNF579: [4]
          DNAH12: [5]
          KIF26A: [5]
            MAFA: [5]
           UNC80: [5]
           DNAH6: [6]
           OR3A4: [6]
          FAM38B: [7]
           IGFN1: [7]
         COL29A1: [12]
             EYS: [15]
         Unknown: [90]
       ----TOTAL: [361]
Categories not in categ set:
          NaN: [32]
    ----TOTAL: [32]
Mutations not in categ set:
        ABCB1: [1]
         APOB: [1]
        ATAD5: [1]
        CCAR1: [1]
        CENPF: [1]
        CORO7: [1]
        DACT1: [1]
      DCUN1D1: [1]
         FAT1: [1]
         FAT2: [1]
     HEATR7B2: [1]
        HERC5: [1]
        HLA-A: [1]
         MLL3: [1]
        NLRP4: [1]
         ODZ1: [1]
       TATDN1: [1]
       UNC45B: [1]
       ZNF236: [1]
       ZNF813: [1]
         RYR3: [2]
        MUC16: [3]
          TTN: [3]
        CSMD3: [4]
    ----TOTAL: [32]

Mutations in this patient+gene+categ set: 62507/62900
	0 mutations not in patient set
	361 mutations not in gene set
	32 mutations not in categ set
		(Note: at least 30 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

          Tp*C->mut   1.83e-05   18.3/Mb  (relative = 2.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.33e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.64e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.38e-06    3.4/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   1.05e-06    1.1/Mb  (relative = 0.12)
        double_null   5.64e-09    0.0/Mb  (relative = 0.00)
              Total   8.91e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

LUSC-18-3406-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3407-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.21)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.30e-06    1.3/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3408-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.57e-06    1.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3409-TP
          Tp*C->mut   2.85e-04  285.1/Mb  (relative = 3.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-05   84.3/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.02)  expected NS/S ratio = 4.9
             A->mut   1.23e-05   12.3/Mb  (relative = 0.15)  expected NS/S ratio = 3.9
         indel+null   5.72e-06    5.7/Mb  (relative = 0.07)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   8.20e-05   82.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3410-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 2.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.86e-06    7.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3411-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-05   12.4/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   4.78e-06    4.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3412-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.21e-06    6.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.45e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3414-TP
          Tp*C->mut   2.22e-05   22.2/Mb  (relative = 2.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3415-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 2.59)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3416-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.49e-05   14.9/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.18e-06    2.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-05   12.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3417-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.67e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3419-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.91e-06    1.9/Mb  (relative = 0.17)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-3421-TP
          Tp*C->mut   1.79e-05   17.9/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.08e-05   10.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-05   11.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4083-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.51e-06    4.5/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.07e-06    9.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4086-TP
          Tp*C->mut   7.57e-06    7.6/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.89e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-4721-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 0.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5592-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.79e-06    8.8/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.23e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-18-5595-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 4.09)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.07)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.66e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1070-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.08e-06    4.1/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   5.19e-06    5.2/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.11)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   1.44e-05   14.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1071-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.56e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1076-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   8.73e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1077-TP
          Tp*C->mut   1.16e-05   11.6/Mb  (relative = 1.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.94e-06    2.9/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1078-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 3.66)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.78e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-1081-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.93)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.66e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5782-TP
          Tp*C->mut   2.85e-05   28.5/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.96e-06    9.0/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.13e-05   11.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5784-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.39)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.53e-06    6.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5786-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-21-5787-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.29)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.30e-05   13.0/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.15e-05   11.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-0944-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.11e-06    3.1/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1002-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.86e-06    6.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1011-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 3.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.24e-06    1.2/Mb  (relative = 0.40)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1012-TP
          Tp*C->mut   1.51e-05   15.1/Mb  (relative = 1.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.70e-06    7.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-1016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.12e-05   11.2/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4591-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.18)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.63e-06    7.6/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.58)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.03e-06    7.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4593-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.77)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.24e-06    5.2/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.29e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4595-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4599-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.76e-06    9.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-06    3.6/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.71e-06    4.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.44e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4601-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4604-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.83e-06    7.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4607-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 2.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.22e-06    2.2/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.88e-06    2.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-4613-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.97e-06    5.0/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   8.60e-06    8.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   1.97e-06    2.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5471-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 1.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.40e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5472-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 0.98)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.60)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5473-TP
          Tp*C->mut   6.48e-05   64.8/Mb  (relative = 2.84)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.69e-05   16.9/Mb  (relative = 0.74)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.35e-06    4.3/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   6.89e-06    6.9/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   2.84e-06    2.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-05   22.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5474-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 2.92)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.04e-06    2.0/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.11e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5477-TP
          Tp*C->mut   1.87e-05   18.7/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.66)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.02e-06    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.85e-06    4.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5478-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.03)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.39e-06    5.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5480-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.80)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-06    3.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.75e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5482-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.53)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.79e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5485-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5489-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.63)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.79e-06    6.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5491-TP
          Tp*C->mut   3.25e-05   32.5/Mb  (relative = 3.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.76)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   1.24e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-05   10.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-22-5492-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.14)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.64)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.43e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4532-TP
          Tp*C->mut   2.19e-05   21.9/Mb  (relative = 1.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.25e-05   12.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4533-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.82e-06    3.8/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4538-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.84)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.63)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4547-TP
          Tp*C->mut   2.45e-05   24.5/Mb  (relative = 3.85)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.20e-06    3.2/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.36e-06    6.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4566-TP
          Tp*C->mut   4.97e-05   49.7/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.91e-05   39.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.08e-06    8.1/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   1.13e-05   11.3/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   4.99e-06    5.0/Mb  (relative = 0.14)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.50e-05   35.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4582-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4583-TP
          Tp*C->mut   2.27e-05   22.7/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.57e-05   15.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.47e-05   14.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-4586-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.01e-05   10.1/Mb  (relative = 1.02)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-33-6737-TP
          Tp*C->mut   4.09e-05   40.9/Mb  (relative = 3.12)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.16e-05   11.6/Mb  (relative = 0.89)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.18)  expected NS/S ratio = 3.9
         indel+null   1.47e-06    1.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-05   13.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2596-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 2.17)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2600-TP
          Tp*C->mut   5.52e-05   55.2/Mb  (relative = 3.65)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 0.62)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.77e-06    1.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.51e-05   15.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-2608-TP
          Tp*C->mut   7.82e-06    7.8/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.45e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5231-TP
          Tp*C->mut   2.72e-05   27.2/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.99e-06    4.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   9.28e-06    9.3/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   2.04e-06    2.0/Mb  (relative = 0.11)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.80e-05   18.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5232-TP
          Tp*C->mut   9.33e-06    9.3/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   2.18e-06    2.2/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.22e-06    5.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5234-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.49e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5236-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.97e-06    5.0/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5239-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.01e-06    7.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5240-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.78)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.08)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.32)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5241-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   1.00e-07    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-07    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5927-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.14e-06    9.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.30e-06    8.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5928-TP
          Tp*C->mut   4.41e-05   44.1/Mb  (relative = 3.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-05   11.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-34-5929-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 2.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.98e-06    2.0/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3783-TP
          Tp*C->mut   4.26e-05   42.6/Mb  (relative = 3.93)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.68e-06    5.7/Mb  (relative = 0.52)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.14)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.29)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.08e-05   10.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-3789-TP
          Tp*C->mut   2.83e-05   28.3/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.31e-05   13.1/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   2.54e-06    2.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-05   13.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4133-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.52e-06    8.5/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.43e-06    8.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4135-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   3.69e-06    3.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.96e-06    8.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-4141-TP
          Tp*C->mut   1.01e-05   10.1/Mb  (relative = 1.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.11e-06    3.1/Mb  (relative = 0.33)  expected NS/S ratio = 4.9
             A->mut   4.03e-06    4.0/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.50e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-37-5819-TP
          Tp*C->mut   2.70e-05   27.0/Mb  (relative = 1.28)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.45e-05   24.5/Mb  (relative = 1.16)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   7.44e-06    7.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   3.11e-06    3.1/Mb  (relative = 0.15)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5016-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.42)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5019-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.30)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.25e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5021-TP
          Tp*C->mut   6.31e-06    6.3/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.08e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5022-TP
          Tp*C->mut   4.19e-05   41.9/Mb  (relative = 4.81)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.34)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   2.25e-06    2.3/Mb  (relative = 0.26)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5024-TP
          Tp*C->mut   1.69e-05   16.9/Mb  (relative = 2.69)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.99e-06    4.0/Mb  (relative = 0.63)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.80e-06    2.8/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.29e-06    6.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5027-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.44)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.60e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5028-TP
          Tp*C->mut   2.04e-05   20.4/Mb  (relative = 3.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.82e-06    3.8/Mb  (relative = 0.65)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   1.37e-06    1.4/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.89e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5029-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 2.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.91e-06    1.9/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5030-TP
          Tp*C->mut   1.64e-05   16.4/Mb  (relative = 2.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.14e-05   11.4/Mb  (relative = 1.39)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   1.64e-06    1.6/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.20e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5031-TP
          Tp*C->mut   8.37e-05   83.7/Mb  (relative = 4.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.83e-06    6.8/Mb  (relative = 0.37)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.16)  expected NS/S ratio = 3.9
         indel+null   2.34e-06    2.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.84e-05   18.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5035-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 2.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   1.50e-06    1.5/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   3.01e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.52e-06    4.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5036-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.94)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   4.98e-06    5.0/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5037-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.70)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.75e-06    6.7/Mb  (relative = 0.95)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.13e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-39-5039-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.59e-06    5.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.99e-07    0.8/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-2578-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.07)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.00e-05   10.0/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.94e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3394-TP
          Tp*C->mut   5.55e-06    5.5/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.55e-07    0.4/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-3920-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 2.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 0.79)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.77e-06    8.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-5668-TP
          Tp*C->mut   1.97e-05   19.7/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.02e-05   20.2/Mb  (relative = 1.14)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.91e-06    3.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   7.58e-06    7.6/Mb  (relative = 0.43)  expected NS/S ratio = 3.9
         indel+null   2.38e-06    2.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-05   17.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6143-TP
          Tp*C->mut   1.29e-05   12.9/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.34e-06    8.3/Mb  (relative = 0.88)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.15)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.47e-06    9.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6647-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.90)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.02e-06    5.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6770-TP
          Tp*C->mut   8.07e-06    8.1/Mb  (relative = 1.23)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.30e-06    6.3/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.31e-06    2.3/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-43-6771-TP
          Tp*C->mut   5.80e-06    5.8/Mb  (relative = 1.02)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.33)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   5.69e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.69e-06    5.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3765-TP
          Tp*C->mut   1.74e-05   17.4/Mb  (relative = 1.76)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.09e-05   10.9/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.87e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3766-TP
          Tp*C->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 4.9
             A->mut         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 3.9
         indel+null   6.69e-08    0.1/Mb  (relative = 1.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.69e-08    0.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3767-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.12e-06    2.1/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   9.04e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3768-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.99e-06    8.0/Mb  (relative = 0.81)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   4.91e-06    4.9/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-3769-TP
          Tp*C->mut   5.95e-05   59.5/Mb  (relative = 2.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.01e-05   20.1/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.79e-06    4.8/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   7.92e-06    7.9/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   2.88e-06    2.9/Mb  (relative = 0.12)
        double_null   1.00e-07    0.1/Mb  (relative = 0.00)
              Total   2.42e-05   24.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6025-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.44e-06    4.4/Mb  (relative = 0.77)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.32)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   4.69e-07    0.5/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-46-6026-TP
          Tp*C->mut   1.34e-05   13.4/Mb  (relative = 2.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.66e-06    6.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.11)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.27)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.22e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4079-TP
          Tp*C->mut   1.66e-05   16.6/Mb  (relative = 1.57)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.94e-06    5.9/Mb  (relative = 0.56)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.06e-05   10.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4080-TP
          Tp*C->mut   1.11e-05   11.1/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.59e-06    9.6/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.47e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-51-4081-TP
          Tp*C->mut   6.81e-06    6.8/Mb  (relative = 1.15)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.92e-06    5.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-1622-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.57e-06    6.6/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.99e-06    6.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5897-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 2.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-07    0.3/Mb  (relative = 0.08)  expected NS/S ratio = 4.9
             A->mut   1.09e-06    1.1/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.18e-06    3.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-5898-TP
          Tp*C->mut   7.06e-06    7.1/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.17e-06    4.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   2.32e-06    2.3/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.32e-06    4.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6545-TP
          Tp*C->mut   1.72e-05   17.2/Mb  (relative = 2.01)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.28e-06    3.3/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.53e-06    8.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-56-6546-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.27)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.64e-06    4.6/Mb  (relative = 0.48)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.57e-06    9.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2698-TP
          Tp*C->mut   1.49e-04  148.6/Mb  (relative = 4.19)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.78e-05   17.8/Mb  (relative = 0.50)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.24e-06    5.2/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.20)  expected NS/S ratio = 3.9
         indel+null   3.58e-06    3.6/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.55e-05   35.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2707-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 3.06)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 0.72)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   4.44e-07    0.4/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   1.23e-06    1.2/Mb  (relative = 0.33)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.71e-06    3.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2708-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.88)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.79e-06    4.8/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   6.02e-07    0.6/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.76e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2709-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.53e-06    4.5/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   6.36e-07    0.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.32e-06    5.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2710-TP
          Tp*C->mut   9.08e-06    9.1/Mb  (relative = 1.50)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.06e-06    6.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2711-TP
          Tp*C->mut   4.04e-06    4.0/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   3.31e-06    3.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2712-TP
          Tp*C->mut   4.54e-06    4.5/Mb  (relative = 1.72)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.66e-06    2.7/Mb  (relative = 1.01)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.33e-07    0.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   4.35e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.64e-06    2.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2713-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.64)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.23e-06    7.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2715-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.39e-06    2.4/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.82e-06    4.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2719-TP
          Tp*C->mut   7.32e-06    7.3/Mb  (relative = 1.31)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.77e-06    5.8/Mb  (relative = 1.03)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   3.34e-06    3.3/Mb  (relative = 0.60)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2720-TP
          Tp*C->mut   3.05e-05   30.5/Mb  (relative = 2.49)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.05e-05   10.5/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.20)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-05   12.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2721-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.60e-06    1.6/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.42)  expected NS/S ratio = 4.9
             A->mut   8.87e-07    0.9/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.31e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2722-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.52)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.92)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.30e-06    4.3/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.44e-06    9.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2723-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 1.46)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.43e-06    8.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   3.62e-06    3.6/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.10e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2724-TP
          Tp*C->mut   1.03e-05   10.3/Mb  (relative = 1.16)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.50e-06    9.5/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.27)  expected NS/S ratio = 4.9
             A->mut   4.57e-06    4.6/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2725-TP
          Tp*C->mut   5.05e-06    5.0/Mb  (relative = 1.11)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.13)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.55)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.55e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-60-2726-TP
          Tp*C->mut   1.31e-05   13.1/Mb  (relative = 1.61)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.90e-06    7.9/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.12)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.59)  expected NS/S ratio = 3.9
         indel+null   7.03e-07    0.7/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.17e-06    8.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5128-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 0.97)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.81e-06    7.8/Mb  (relative = 0.91)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   4.85e-06    4.8/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   1.34e-06    1.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.57e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-5131-TP
          Tp*C->mut   1.54e-05   15.4/Mb  (relative = 1.79)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.37e-06    7.4/Mb  (relative = 0.86)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.26)  expected NS/S ratio = 4.9
             A->mut   4.23e-06    4.2/Mb  (relative = 0.49)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.60e-06    8.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-63-6202-TP
          Tp*C->mut   1.36e-05   13.6/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.18e-05   11.8/Mb  (relative = 1.20)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2727-TP
          Tp*C->mut   1.06e-05   10.6/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.06)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.56e-06    6.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2734-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.17e-05   11.7/Mb  (relative = 1.35)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.14e-06    1.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.70e-06    8.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2742-TP
          Tp*C->mut   5.30e-06    5.3/Mb  (relative = 0.86)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.95e-06    5.9/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.51e-06    1.5/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.55e-06    3.5/Mb  (relative = 0.57)  expected NS/S ratio = 3.9
         indel+null   9.37e-07    0.9/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2744-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.62)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.17e-06    8.2/Mb  (relative = 1.09)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.66e-06    2.7/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2754-TP
          Tp*C->mut   1.21e-05   12.1/Mb  (relative = 1.36)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.75e-06    2.8/Mb  (relative = 0.31)  expected NS/S ratio = 4.9
             A->mut   3.89e-06    3.9/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.90e-06    8.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2755-TP
          Tp*C->mut   6.05e-06    6.1/Mb  (relative = 1.08)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.12e-06    6.1/Mb  (relative = 1.10)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.33e-06    1.3/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.00e-06    3.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   5.02e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.59e-06    5.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2756-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 1.05)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.52e-05   15.2/Mb  (relative = 1.11)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.20e-06    3.2/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   1.67e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.37e-05   13.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2757-TP
          Tp*C->mut   1.14e-05   11.4/Mb  (relative = 1.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.39e-06    6.4/Mb  (relative = 0.87)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   3.07e-06    3.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.20e-06    1.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.33e-06    7.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2758-TP
          Tp*C->mut   2.25e-05   22.5/Mb  (relative = 2.32)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.28e-06    7.3/Mb  (relative = 0.75)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.28)  expected NS/S ratio = 4.9
             A->mut   4.44e-06    4.4/Mb  (relative = 0.46)  expected NS/S ratio = 3.9
         indel+null   7.70e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.67e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2759-TP
          Tp*C->mut   2.50e-05   25.0/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 0.96)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   5.12e-06    5.1/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.54e-06    1.5/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-05   12.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2763-TP
          Tp*C->mut   1.61e-05   16.1/Mb  (relative = 1.37)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.22e-05   12.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   6.01e-06    6.0/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.18e-05   11.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2765-TP
          Tp*C->mut   2.77e-06    2.8/Mb  (relative = 0.91)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.64e-06    3.6/Mb  (relative = 1.19)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.35)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.38)  expected NS/S ratio = 3.9
         indel+null   3.35e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2766-TP
          Tp*C->mut   2.47e-05   24.7/Mb  (relative = 2.35)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   8.70e-06    8.7/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.04e-06    2.0/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   4.37e-06    4.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   1.07e-06    1.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.05e-05   10.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2767-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.60)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.02e-05   10.2/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.13e-06    2.1/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   4.10e-06    4.1/Mb  (relative = 0.42)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.77e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2768-TP
          Tp*C->mut   1.92e-05   19.2/Mb  (relative = 2.56)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.86e-06    5.9/Mb  (relative = 0.78)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.24e-06    1.2/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.35)  expected NS/S ratio = 3.9
         indel+null   1.00e-06    1.0/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.50e-06    7.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2770-TP
          Tp*C->mut   8.83e-06    8.8/Mb  (relative = 1.43)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.92e-06    6.9/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.07e-06    1.1/Mb  (relative = 0.17)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.44)  expected NS/S ratio = 3.9
         indel+null   6.69e-07    0.7/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.19e-06    6.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2771-TP
          Tp*C->mut   1.84e-05   18.4/Mb  (relative = 2.48)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.06e-06    5.1/Mb  (relative = 0.68)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.15e-06    1.2/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.51)  expected NS/S ratio = 3.9
         indel+null   8.03e-07    0.8/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.43e-06    7.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2773-TP
          Tp*C->mut   7.32e-05   73.2/Mb  (relative = 4.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.23e-06    9.2/Mb  (relative = 0.55)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   2.05e-06    2.0/Mb  (relative = 0.12)  expected NS/S ratio = 3.9
         indel+null   1.87e-06    1.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.67e-05   16.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2777-TP
          Tp*C->mut   9.59e-06    9.6/Mb  (relative = 1.74)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   2.59e-06    2.6/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   5.35e-07    0.5/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.52e-06    5.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2778-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 3.55)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.84e-06    2.8/Mb  (relative = 0.69)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   1.16e-06    1.2/Mb  (relative = 0.28)  expected NS/S ratio = 3.9
         indel+null   2.01e-07    0.2/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.12e-06    4.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2780-TP
          Tp*C->mut   6.56e-06    6.6/Mb  (relative = 1.83)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.93e-06    2.9/Mb  (relative = 0.82)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.50)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.58e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2781-TP
          Tp*C->mut   8.58e-06    8.6/Mb  (relative = 1.96)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.70e-06    4.7/Mb  (relative = 1.07)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   7.10e-07    0.7/Mb  (relative = 0.16)  expected NS/S ratio = 4.9
             A->mut   1.71e-06    1.7/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   3.68e-07    0.4/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.38e-06    4.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2782-TP
          Tp*C->mut   1.89e-05   18.9/Mb  (relative = 1.90)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.04e-05   10.4/Mb  (relative = 1.04)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.22e-06    2.2/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.34)  expected NS/S ratio = 3.9
         indel+null   9.71e-07    1.0/Mb  (relative = 0.10)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   9.94e-06    9.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2783-TP
          Tp*C->mut   1.08e-05   10.8/Mb  (relative = 1.54)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   6.04e-06    6.0/Mb  (relative = 0.85)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.69e-06    1.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   3.75e-06    3.8/Mb  (relative = 0.53)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2785-TP
          Tp*C->mut   1.58e-04  158.4/Mb  (relative = 4.47)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.29e-05   12.9/Mb  (relative = 0.36)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   5.15e-06    5.1/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   8.19e-06    8.2/Mb  (relative = 0.23)  expected NS/S ratio = 3.9
         indel+null   3.51e-06    3.5/Mb  (relative = 0.10)
        double_null   6.69e-08    0.1/Mb  (relative = 0.00)
              Total   3.54e-05   35.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2786-TP
          Tp*C->mut   1.44e-05   14.4/Mb  (relative = 2.04)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 0.73)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.60e-06    1.6/Mb  (relative = 0.23)  expected NS/S ratio = 4.9
             A->mut   3.21e-06    3.2/Mb  (relative = 0.45)  expected NS/S ratio = 3.9
         indel+null   1.04e-06    1.0/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.06e-06    7.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2787-TP
          Tp*C->mut   2.17e-05   21.7/Mb  (relative = 1.38)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.65e-05   16.5/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   3.73e-06    3.7/Mb  (relative = 0.24)  expected NS/S ratio = 4.9
             A->mut   6.42e-06    6.4/Mb  (relative = 0.41)  expected NS/S ratio = 3.9
         indel+null   2.07e-06    2.1/Mb  (relative = 0.13)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   1.58e-05   15.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2788-TP
          Tp*C->mut   1.24e-05   12.4/Mb  (relative = 2.13)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   4.62e-06    4.6/Mb  (relative = 0.80)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   2.73e-06    2.7/Mb  (relative = 0.47)  expected NS/S ratio = 3.9
         indel+null   7.36e-07    0.7/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.79e-06    5.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2789-TP
          Tp*C->mut   1.49e-05   14.9/Mb  (relative = 1.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.67e-06    9.7/Mb  (relative = 0.98)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.93e-06    2.9/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   3.96e-06    4.0/Mb  (relative = 0.40)  expected NS/S ratio = 3.9
         indel+null   1.17e-06    1.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.84e-06    9.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2791-TP
          Tp*C->mut   1.94e-05   19.4/Mb  (relative = 1.99)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.41e-06    9.4/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.42e-06    1.4/Mb  (relative = 0.15)  expected NS/S ratio = 4.9
             A->mut   3.48e-06    3.5/Mb  (relative = 0.36)  expected NS/S ratio = 3.9
         indel+null   1.37e-06    1.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.74e-06    9.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2792-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 0.94)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.15e-06    5.1/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   9.76e-07    1.0/Mb  (relative = 0.21)  expected NS/S ratio = 4.9
             A->mut   1.77e-06    1.8/Mb  (relative = 0.39)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.58e-06    4.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2793-TP
          Tp*C->mut   9.84e-06    9.8/Mb  (relative = 1.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.46e-06    7.5/Mb  (relative = 0.83)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.66e-06    2.7/Mb  (relative = 0.30)  expected NS/S ratio = 4.9
             A->mut   6.07e-06    6.1/Mb  (relative = 0.68)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-06    9.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2794-TP
          Tp*C->mut   1.19e-05   11.9/Mb  (relative = 2.51)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   5.50e-06    5.5/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   6.21e-07    0.6/Mb  (relative = 0.13)  expected NS/S ratio = 4.9
             A->mut   8.19e-07    0.8/Mb  (relative = 0.17)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.09)
        double_null   3.35e-08    0.0/Mb  (relative = 0.01)
              Total   4.72e-06    4.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2795-TP
          Tp*C->mut   1.46e-05   14.6/Mb  (relative = 1.41)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.21e-05   12.1/Mb  (relative = 1.17)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.86e-06    1.9/Mb  (relative = 0.18)  expected NS/S ratio = 4.9
             A->mut   3.14e-06    3.1/Mb  (relative = 0.30)  expected NS/S ratio = 3.9
         indel+null   1.61e-06    1.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-05   10.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-66-2800-TP
          Tp*C->mut   8.32e-06    8.3/Mb  (relative = 1.24)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   7.54e-06    7.5/Mb  (relative = 1.12)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.95e-06    2.0/Mb  (relative = 0.29)  expected NS/S ratio = 4.9
             A->mut   2.46e-06    2.5/Mb  (relative = 0.37)  expected NS/S ratio = 3.9
         indel+null   8.37e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.73e-06    6.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6722-TP
          Tp*C->mut   1.39e-05   13.9/Mb  (relative = 1.71)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   9.32e-06    9.3/Mb  (relative = 1.15)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   1.78e-06    1.8/Mb  (relative = 0.22)  expected NS/S ratio = 4.9
             A->mut   2.53e-06    2.5/Mb  (relative = 0.31)  expected NS/S ratio = 3.9
         indel+null   8.70e-07    0.9/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.13e-06    8.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-70-6723-TP
          Tp*C->mut   4.29e-06    4.3/Mb  (relative = 1.22)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   3.46e-06    3.5/Mb  (relative = 0.99)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-07    0.9/Mb  (relative = 0.25)  expected NS/S ratio = 4.9
             A->mut   1.84e-06    1.8/Mb  (relative = 0.52)  expected NS/S ratio = 3.9
         indel+null   4.02e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.51e-06    3.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6175-TP
          Tp*C->mut   2.02e-06    2.0/Mb  (relative = 1.26)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.31e-06    2.3/Mb  (relative = 1.44)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   8.88e-08    0.1/Mb  (relative = 0.06)  expected NS/S ratio = 4.9
             A->mut   3.41e-07    0.3/Mb  (relative = 0.21)  expected NS/S ratio = 3.9
         indel+null   2.68e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6560-TP
          Tp*C->mut   1.56e-05   15.6/Mb  (relative = 1.20)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   1.36e-05   13.6/Mb  (relative = 1.05)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.49e-06    2.5/Mb  (relative = 0.19)  expected NS/S ratio = 4.9
             A->mut   7.03e-06    7.0/Mb  (relative = 0.54)  expected NS/S ratio = 3.9
         indel+null   1.41e-06    1.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.30e-05   13.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

LUSC-85-6561-TP
          Tp*C->mut   5.02e-05   50.2/Mb  (relative = 2.10)  expected NS/S ratio = 3.3
  (A/C/G)p*C->(A/T)   2.32e-05   23.2/Mb  (relative = 0.97)  expected NS/S ratio = 2.6
      (A/C/G)p*C->G   2.40e-06    2.4/Mb  (relative = 0.10)  expected NS/S ratio = 4.9
             A->mut   3.41e-06    3.4/Mb  (relative = 0.14)  expected NS/S ratio = 3.9
         indel+null   5.92e-06    5.9/Mb  (relative = 0.25)
        double_null   3.35e-08    0.0/Mb  (relative = 0.00)
              Total   2.39e-05   23.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18094 2000/18094 3000/18094 4000/18094 5000/18094 6000/18094 7000/18094 8000/18094 9000/18094 10000/18094 11000/18094 12000/18094 13000/18094 14000/18094 15000/18094 16000/18094 17000/18094 18000/18094 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 200: processing genes 18005 - 18094
Calculating significance of each gene.
Using projection method.
18005	ZNF799	9.202752e-01
18006	ZNF8	1
18007	ZNF80	8.023037e-05
18008	ZNF800	7.940588e-01
18009	ZNF804A	7.683088e-01
18010	ZNF804B	8.915282e-01
18011	ZNF805	1
18012	ZNF808	2.332675e-01
18013	ZNF81	7.600680e-02
18014	ZNF813	4.877423e-03
18015	ZNF814	1
18016	ZNF816A	1
18017	ZNF821	5.665599e-01
18018	ZNF823	5.090567e-01
18019	ZNF827	5.633874e-01
18020	ZNF828	6.734810e-01
18021	ZNF829	2.637181e-01
18022	ZNF83	7.506282e-01
18023	ZNF830	5.589894e-01
18024	ZNF831	9.831147e-01
18025	ZNF835	9.576451e-04
18026	ZNF836	4.584055e-01
18027	ZNF839	1
18028	ZNF841	1
18029	ZNF844	1
18030	ZNF845	1
18031	ZNF846	6.623103e-01
18032	ZNF85	1
18033	ZNF860	1
18034	ZNF862	9.460054e-01
18035	ZNF878	7.848634e-01
18036	ZNF880	1
18037	ZNF883	1
18038	ZNF90	1
18039	ZNF91	1.374555e-03
18040	ZNF92	7.417232e-01
18041	ZNF93	7.570854e-02
18042	ZNF98	3.545106e-04
18043	ZNF99	1
18044	ZNFX1	9.804290e-01
18045	ZNHIT1	3.300709e-01
18046	ZNHIT2	1
18047	ZNHIT3	1
18048	ZNHIT6	7.959735e-01
18049	ZNRD1	1
18050	ZNRF1	1
18051	ZNRF2	6.569975e-02
18052	ZNRF3	9.273151e-01
18053	ZNRF4	3.113210e-01
18054	ZP1	1
18055	ZP2	1
18056	ZP3	7.429267e-01
18057	ZP4	9.779408e-02
18058	ZPBP	2.036906e-02
18059	ZPBP2	1
18060	ZPLD1	3.509295e-03
18061	ZRANB1	5.511528e-01
18062	ZRANB2	5.398695e-01
18063	ZRANB3	3.179809e-01
18064	ZRSR2	1
18065	ZSCAN1	3.375546e-01
18066	ZSCAN10	1
18067	ZSCAN12	1
18068	ZSCAN16	7.497242e-01
18069	ZSCAN18	7.749227e-01
18070	ZSCAN2	1
18071	ZSCAN20	8.942907e-01
18072	ZSCAN21	5.607549e-01
18073	ZSCAN22	3.081599e-01
18074	ZSCAN29	1
18075	ZSCAN4	1.824589e-03
18076	ZSCAN5A	5.794490e-01
18077	ZSCAN5B	2.934211e-03
18078	ZSWIM1	1
18079	ZSWIM2	2.053650e-02
18080	ZSWIM3	3.327934e-01
18081	ZSWIM4	4.208026e-01
18082	ZSWIM5	9.699942e-01
18083	ZSWIM7	1
18084	ZUFSP	7.238569e-01
18085	ZW10	1
18086	ZWILCH	6.811001e-01
18087	ZWINT	1.855065e-01
18088	ZXDA	1.148541e-01
18089	ZXDB	7.364263e-01
18090	ZXDC	3.211348e-01
18091	ZYG11B	6.202407e-01
18092	ZYX	7.768984e-01
18093	ZZEF1	1
18094	ZZZ3	1.879149e-01
Done

Running MutSig 2:
Scatter job 200: processing genes 18005 - 18094
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ZNF804B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.260489e-02	ci left: 2.174386e-01	ci right 2.339215e-01	k: 2256	n:10000
Cons ci ratio: 1.420057e-01	ci left: 6.575174e-02	ci right 7.590000e-02	k: 707	n:10000
KS ci ratio: 3.051687e-02	ci left: 6.130147e-01	ci right 6.321138e-01	k: 6226	n:10000
ZNF804B   10000 perm   2 sec   (4036 perm/sec)   p_kst 6.226000e-01   p_cons 7.070000e-02   p_joint 2.256000e-01

Joint ci ratio: 4.016622e-02	ci left: 3.160727e-01	ci right 3.290789e-01	k: 6451	n:20000
Cons ci ratio: 1.042287e-01	ci left: 6.259732e-02	ci right 6.952949e-02	k: 1320	n:20000
KS ci ratio: 2.169469e-02	ci left: 6.133313e-01	ci right 6.268338e-01	k: 12402	n:20000
ZNF804B   20000 perm   7 sec   (2820 perm/sec)   p_kst 6.201000e-01   p_cons 6.600000e-02   p_joint 3.225500e-01

Joint ci ratio: 3.398208e-02	ci left: 3.020150e-01	ci right 3.124890e-01	k: 9217	n:30000
Cons ci ratio: 8.414083e-02	ci left: 6.462097e-02	ci right 7.032981e-02	k: 2023	n:30000
KS ci ratio: 1.763507e-02	ci left: 6.166854e-01	ci right 6.276910e-01	k: 18666	n:30000
ZNF804B   30000 perm   10 sec   (2980 perm/sec)   p_kst 6.222000e-01   p_cons 6.743333e-02   p_joint 3.072333e-01

Outputting figure to mutsig2_images.part000000000200/ZNF804B.32_4064_30000_0.6222_0.067433_0.30723.png
                gene_name: ZNF804B
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.067 
      ci_cons_bounds_left: 0.065 
     ci_cons_bounds_right: 0.070 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 2 percent done.
ZNF804A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.752138e-02	ci left: 6.604841e-01	ci right 6.790169e-01	k: 6698	n:10000
Cons ci ratio: 1.700177e-02	ci left: 8.343964e-01	ci right 8.488040e-01	k: 8417	n:10000
KS ci ratio: 3.558222e-02	ci left: 5.383830e-01	ci right 5.579889e-01	k: 5482	n:10000
ZNF804A   10000 perm   2 sec   (4113 perm/sec)   p_kst 5.482000e-01   p_cons 8.417000e-01   p_joint 6.698000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF804A.22_3646_10000_0.5482_0.8417_0.6698.png
                gene_name: ZNF804A
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 4 percent done.
ZNF91
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.223412e-02	ci left: 9.055571e-01	ci right 9.168020e-01	k: 9113	n:10000
Cons ci ratio: 3.249880e-02	ci left: 5.828939e-01	ci right 6.022522e-01	k: 5926	n:10000
KS ci ratio: 1.903571e-02	ci left: 8.013591e-01	ci right 8.168604e-01	k: 8092	n:10000
ZNF91   10000 perm   2 sec   (4430 perm/sec)   p_kst 8.092000e-01   p_cons 5.926000e-01   p_joint 9.113000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF91.21_3592_10000_0.8092_0.5926_0.9113.png
                gene_name: ZNF91
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 6 percent done.
ZNF99
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.383382e-02	ci left: 8.829867e-01	ci right 8.953856e-01	k: 8893	n:10000
Cons ci ratio: 6.145499e-03	ci left: 9.729141e-01	ci right 9.790043e-01	k: 9761	n:10000
KS ci ratio: 2.391178e-02	ci left: 7.199706e-01	ci right 7.374960e-01	k: 7288	n:10000
ZNF99   10000 perm   2 sec   (4264 perm/sec)   p_kst 7.288000e-01   p_cons 9.761000e-01   p_joint 8.893000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF99.20_3141_10000_0.7288_0.9761_0.8893.png
                gene_name: ZNF99
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.90 

Current progress: 8 percent done.
ZNF831
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.961909e-02	ci left: 1.872743e-01	ci right 2.029038e-01	k: 1950	n:10000
Cons ci ratio: 3.608058e-02	ci left: 5.314728e-01	ci right 5.511031e-01	k: 5413	n:10000
KS ci ratio: 1.087943e-01	ci left: 1.086148e-01	ci right 1.212105e-01	k: 1148	n:10000
ZNF831   10000 perm   2 sec   (4079 perm/sec)   p_kst 1.148000e-01   p_cons 5.413000e-01   p_joint 1.950000e-01

Joint ci ratio: 5.552325e-02	ci left: 1.939311e-01	ci right 2.050564e-01	k: 3989	n:20000
Cons ci ratio: 2.547602e-02	ci left: 5.351143e-01	ci right 5.489734e-01	k: 10841	n:20000
KS ci ratio: 7.321807e-02	ci left: 1.207415e-01	ci right 1.299677e-01	k: 2506	n:20000
ZNF831   20000 perm   5 sec   (3732 perm/sec)   p_kst 1.253000e-01   p_cons 5.420500e-01   p_joint 1.994500e-01

Outputting figure to mutsig2_images.part000000000200/ZNF831.15_5054_20000_0.1253_0.54205_0.19945.png
                gene_name: ZNF831
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 9 percent done.
ZNF835
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.474272e-02	ci left: 5.502047e-01	ci right 5.697603e-01	k: 5600	n:10000
Cons ci ratio: 8.216589e-02	ci left: 1.777272e-01	ci right 1.930565e-01	k: 1853	n:10000
KS ci ratio: 1.480552e-02	ci left: 8.685630e-01	ci right 8.816176e-01	k: 8752	n:10000
ZNF835   10000 perm   2 sec   (5189 perm/sec)   p_kst 8.752000e-01   p_cons 1.853000e-01   p_joint 5.600000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF835.10_1686_10000_0.8752_0.1853_0.56.png
                gene_name: ZNF835
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 11 percent done.
ZSCAN5B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.362898e-01	ci left: 7.117069e-02	ci right 8.167765e-02	k: 763	n:10000
Cons ci ratio: 5.470120e-02	ci left: 3.299187e-01	ci right 3.485750e-01	k: 3392	n:10000
KS ci ratio: 1.855993e-01	ci left: 3.872553e-02	ci right 4.674361e-02	k: 426	n:10000
ZSCAN5B   10000 perm   2 sec   (5521 perm/sec)   p_kst 4.260000e-02   p_cons 3.392000e-01   p_joint 7.630000e-02

Joint ci ratio: 8.331624e-02	ci left: 9.548311e-02	ci right 1.038337e-01	k: 1992	n:20000
Cons ci ratio: 3.729342e-02	ci left: 3.491613e-01	ci right 3.624807e-01	k: 7116	n:20000
KS ci ratio: 1.304457e-01	ci left: 4.037551e-02	ci right 4.605825e-02	k: 863	n:20000
ZSCAN5B   20000 perm   4 sec   (4955 perm/sec)   p_kst 4.315000e-02   p_cons 3.558000e-01   p_joint 9.960000e-02

Joint ci ratio: 7.326931e-02	ci left: 8.389978e-02	ci right 9.031377e-02	k: 2612	n:30000
Cons ci ratio: 3.061780e-02	ci left: 3.478888e-01	ci right 3.587396e-01	k: 10599	n:30000
KS ci ratio: 1.071591e-01	ci left: 4.040740e-02	ci right 4.501502e-02	k: 1280	n:30000
ZSCAN5B   30000 perm   6 sec   (4737 perm/sec)   p_kst 4.266667e-02   p_cons 3.533000e-01   p_joint 8.706667e-02

Joint ci ratio: 7.243279e-02	ci left: 6.574849e-02	ci right 7.071442e-02	k: 2728	n:40000
Cons ci ratio: 2.653369e-02	ci left: 3.483149e-01	ci right 3.577064e-01	k: 14120	n:40000
KS ci ratio: 9.196235e-02	ci left: 4.144839e-02	ci right 4.546823e-02	k: 1737	n:40000
ZSCAN5B   40000 perm   9 sec   (4612 perm/sec)   p_kst 4.342500e-02   p_cons 3.530000e-01   p_joint 6.820000e-02

Outputting figure to mutsig2_images.part000000000200/ZSCAN5B.9_1504_40000_0.043425_0.353_0.0682.png
                gene_name: ZSCAN5B
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.043 
        ci_ks_bounds_left: 0.041 
       ci_ks_bounds_right: 0.045 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.068 
     ci_joint_bounds_left: 0.066 
    ci_joint_bounds_right: 0.071 

Current progress: 13 percent done.
ZNF98
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.241811e-02	ci left: 5.840980e-01	ci right 6.034473e-01	k: 5938	n:10000
Cons ci ratio: 4.699584e-02	ci left: 4.005369e-01	ci right 4.199155e-01	k: 4102	n:10000
KS ci ratio: 3.709500e-02	ci left: 5.176582e-01	ci right 5.373258e-01	k: 5275	n:10000
ZNF98   10000 perm   2 sec   (5398 perm/sec)   p_kst 5.275000e-01   p_cons 4.102000e-01   p_joint 5.938000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF98.8_1735_10000_0.5275_0.4102_0.5938.png
                gene_name: ZNF98
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 15 percent done.
ZP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.602481e-04	ci left: 9.988336e-01	ci right 9.998376e-01	k: 9995	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
ZP4   10000 perm   2 sec   (5422 perm/sec)   p_kst 1   p_cons 9.995000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000200/ZP4.8_1671_10000_1_0.9995_1.png
                gene_name: ZP4
               theta_stop: 0.00096 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 17 percent done.
ZSCAN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.885111e-02	ci left: 3.820160e-01	ci right 4.012472e-01	k: 3916	n:10000
Cons ci ratio: 6.352252e-03	ci left: 9.712187e-01	ci right 9.775008e-01	k: 9745	n:10000
KS ci ratio: 7.331842e-02	ci left: 2.140838e-01	ci right 2.304783e-01	k: 2222	n:10000
ZSCAN1   10000 perm   2 sec   (6000 perm/sec)   p_kst 2.222000e-01   p_cons 9.745000e-01   p_joint 3.916000e-01

Outputting figure to mutsig2_images.part000000000200/ZSCAN1.8_1243_10000_0.2222_0.9745_0.3916.png
                gene_name: ZSCAN1
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 19 percent done.
ZSCAN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.508864e-02	ci left: 8.642720e-01	ci right 8.775111e-01	k: 8710	n:10000
Cons ci ratio: 4.422483e-02	ci left: 4.301399e-01	ci right 4.496951e-01	k: 4399	n:10000
KS ci ratio: 6.651539e-03	ci left: 9.686815e-01	ci right 9.752397e-01	k: 9721	n:10000
ZSCAN4   10000 perm   2 sec   (5686 perm/sec)   p_kst 9.721000e-01   p_cons 4.399000e-01   p_joint 8.710000e-01

Outputting figure to mutsig2_images.part000000000200/ZSCAN4.8_1314_10000_0.9721_0.4399_0.871.png
                gene_name: ZSCAN4
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.88 

Current progress: 21 percent done.
ZNF80
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.398907e-01	ci left: 6.768608e-02	ci right 7.796444e-02	k: 727	n:10000
Cons ci ratio: 3.434269e-02	ci left: 5.559172e-01	ci right 5.754445e-01	k: 5657	n:10000
KS ci ratio: 2.067437e-01	ci left: 3.110398e-02	ci right 3.837033e-02	k: 346	n:10000
ZNF80   10000 perm   2 sec   (5478 perm/sec)   p_kst 3.460000e-02   p_cons 5.657000e-01   p_joint 7.270000e-02

Joint ci ratio: 8.357263e-02	ci left: 9.494340e-02	ci right 1.032736e-01	k: 1981	n:20000
Cons ci ratio: 2.359095e-02	ci left: 5.730233e-01	ci right 5.867534e-01	k: 11598	n:20000
KS ci ratio: 1.431237e-01	ci left: 3.355738e-02	ci right 3.877859e-02	k: 722	n:20000
ZNF80   20000 perm   4 sec   (4886 perm/sec)   p_kst 3.610000e-02   p_cons 5.799000e-01   p_joint 9.905000e-02

Joint ci ratio: 7.225910e-02	ci left: 8.609620e-02	ci right 9.258359e-02	k: 2679	n:30000
Cons ci ratio: 1.886579e-02	ci left: 5.844093e-01	ci right 5.955732e-01	k: 17700	n:30000
KS ci ratio: 1.190713e-01	ci left: 3.278697e-02	ci right 3.697040e-02	k: 1045	n:30000
ZNF80   30000 perm   6 sec   (4668 perm/sec)   p_kst 3.483333e-02   p_cons 5.900000e-01   p_joint 8.930000e-02

Joint ci ratio: 6.273600e-02	ci left: 8.612839e-02	ci right 9.173145e-02	k: 3556	n:40000
Cons ci ratio: 1.626507e-02	ci left: 5.873400e-01	ci right 5.969966e-01	k: 23687	n:40000
KS ci ratio: 1.033755e-01	ci left: 3.290342e-02	ci right 3.651454e-02	k: 1387	n:40000
ZNF80   40000 perm   9 sec   (4529 perm/sec)   p_kst 3.467500e-02   p_cons 5.921750e-01   p_joint 8.890000e-02

Joint ci ratio: 5.739931e-02	ci left: 8.286575e-02	ci right 8.778251e-02	k: 4265	n:50000
Cons ci ratio: 1.457256e-02	ci left: 5.870360e-01	ci right 5.956734e-01	k: 29568	n:50000
KS ci ratio: 9.156374e-02	ci left: 3.373863e-02	ci right 3.699560e-02	k: 1767	n:50000
ZNF80   50000 perm   11 sec   (4418 perm/sec)   p_kst 3.534000e-02   p_cons 5.913600e-01   p_joint 8.530000e-02

Outputting figure to mutsig2_images.part000000000200/ZNF80.7_826_50000_0.03534_0.59136_0.0853.png
                gene_name: ZNF80
               theta_stop: 0.092 
                    nperm: 50000 
                     p_ks: 0.035 
        ci_ks_bounds_left: 0.034 
       ci_ks_bounds_right: 0.037 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.085 
     ci_joint_bounds_left: 0.083 
    ci_joint_bounds_right: 0.088 

Current progress: 23 percent done.
ZNF813
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.506007e-02	ci left: 4.209661e-01	ci right 4.404743e-01	k: 4307	n:10000
Cons ci ratio: 2.832145e-02	ci left: 6.476011e-01	ci right 6.663073e-01	k: 6570	n:10000
KS ci ratio: 5.742002e-02	ci left: 3.086781e-01	ci right 3.270281e-01	k: 3178	n:10000
ZNF813   10000 perm   2 sec   (5073 perm/sec)   p_kst 3.178000e-01   p_cons 6.570000e-01   p_joint 4.307000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF813.7_1866_10000_0.3178_0.657_0.4307.png
                gene_name: ZNF813
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 25 percent done.
ZSWIM5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.457387e-02	ci left: 5.526098e-01	ci right 5.721538e-01	k: 5624	n:10000
Cons ci ratio: 3.241139e-02	ci left: 5.841983e-01	ci right 6.035469e-01	k: 5939	n:10000
KS ci ratio: 4.518891e-02	ci left: 4.195704e-01	ci right 4.390708e-01	k: 4293	n:10000
ZSWIM5   10000 perm   2 sec   (5100 perm/sec)   p_kst 4.293000e-01   p_cons 5.939000e-01   p_joint 5.624000e-01

Outputting figure to mutsig2_images.part000000000200/ZSWIM5.7_3614_10000_0.4293_0.5939_0.5624.png
                gene_name: ZSWIM5
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 26 percent done.
ZNF827
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.789885e-02	ci left: 5.069520e-01	ci right 5.266382e-01	k: 5168	n:10000
Cons ci ratio: 1.030513e-01	ci left: 1.198488e-01	ci right 1.329697e-01	k: 1263	n:10000
KS ci ratio: 1.522255e-02	ci left: 8.622295e-01	ci right 8.755548e-01	k: 8690	n:10000
ZNF827   10000 perm   2 sec   (5120 perm/sec)   p_kst 8.690000e-01   p_cons 1.263000e-01   p_joint 5.168000e-01

Joint ci ratio: 3.057962e-02	ci left: 4.440864e-01	ci right 4.579279e-01	k: 9020	n:20000
Cons ci ratio: 7.267225e-02	ci left: 1.223656e-01	ci right 1.316432e-01	k: 2539	n:20000
KS ci ratio: 1.074412e-02	ci left: 8.646513e-01	ci right 8.740410e-01	k: 17388	n:20000
ZNF827   20000 perm   4 sec   (4586 perm/sec)   p_kst 8.694000e-01   p_cons 1.269500e-01   p_joint 4.510000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF827.6_3286_20000_0.8694_0.12695_0.451.png
                gene_name: ZNF827
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 28 percent done.
ZNFX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.647580e-02	ci left: 8.427478e-01	ci right 8.568478e-01	k: 8499	n:10000
Cons ci ratio: 5.037083e-02	ci left: 3.675878e-01	ci right 3.866839e-01	k: 3771	n:10000
KS ci ratio: 6.602499e-03	ci left: 9.691039e-01	ci right 9.756170e-01	k: 9725	n:10000
ZNFX1   10000 perm   2 sec   (4384 perm/sec)   p_kst 9.725000e-01   p_cons 3.771000e-01   p_joint 8.499000e-01

Outputting figure to mutsig2_images.part000000000200/ZNFX1.6_5809_10000_0.9725_0.3771_0.8499.png
                gene_name: ZNFX1
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 30 percent done.
ZPLD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.443180e-02	ci left: 4.278462e-01	ci right 4.473902e-01	k: 4376	n:10000
Cons ci ratio: 2.947396e-02	ci left: 6.292960e-01	ci right 6.482231e-01	k: 6388	n:10000
KS ci ratio: 7.227413e-02	ci left: 2.190177e-01	ci right 2.355415e-01	k: 2272	n:10000
ZPLD1   10000 perm   2 sec   (5995 perm/sec)   p_kst 2.272000e-01   p_cons 6.388000e-01   p_joint 4.376000e-01

Outputting figure to mutsig2_images.part000000000200/ZPLD1.6_1340_10000_0.2272_0.6388_0.4376.png
                gene_name: ZPLD1
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 32 percent done.
ZRANB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.023915e-02	ci left: 9.312316e-01	ci right 9.409125e-01	k: 9362	n:10000
Cons ci ratio: 3.640140e-02	ci left: 5.270673e-01	ci right 5.467112e-01	k: 5369	n:10000
KS ci ratio: 4.017829e-02	ci left: 4.777580e-01	ci right 4.974492e-01	k: 4876	n:10000
ZRANB3   10000 perm   2 sec   (5163 perm/sec)   p_kst 4.876000e-01   p_cons 5.369000e-01   p_joint 9.362000e-01

Outputting figure to mutsig2_images.part000000000200/ZRANB3.6_3320_10000_0.4876_0.5369_0.9362.png
                gene_name: ZRANB3
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 34 percent done.
ZSWIM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.389693e-02	ci left: 8.820651e-01	ci right 8.945077e-01	k: 8884	n:10000
Cons ci ratio: 2.952506e-02	ci left: 6.284917e-01	ci right 6.474279e-01	k: 6380	n:10000
KS ci ratio: 2.543521e-02	ci left: 6.946419e-01	ci right 7.126393e-01	k: 7037	n:10000
ZSWIM2   10000 perm   2 sec   (5505 perm/sec)   p_kst 7.037000e-01   p_cons 6.380000e-01   p_joint 8.884000e-01

Outputting figure to mutsig2_images.part000000000200/ZSWIM2.6_1938_10000_0.7037_0.638_0.8884.png
                gene_name: ZSWIM2
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 36 percent done.
ZZZ3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.762261e-02	ci left: 1.952523e-01	ci right 2.111210e-01	k: 2031	n:10000
Cons ci ratio: 3.570447e-02	ci left: 5.366803e-01	ci right 5.562926e-01	k: 5465	n:10000
KS ci ratio: 1.191911e-01	ci left: 9.175384e-02	ci right 1.034818e-01	k: 975	n:10000
ZZZ3   10000 perm   2 sec   (5378 perm/sec)   p_kst 9.750000e-02   p_cons 5.465000e-01   p_joint 2.031000e-01

Joint ci ratio: 4.717303e-02	ci left: 2.505577e-01	ci right 2.627131e-01	k: 5132	n:20000
Cons ci ratio: 2.525108e-02	ci left: 5.395191e-01	ci right 5.533674e-01	k: 10929	n:20000
KS ci ratio: 8.488614e-02	ci left: 9.224545e-02	ci right 1.004723e-01	k: 1926	n:20000
ZZZ3   20000 perm   4 sec   (4851 perm/sec)   p_kst 9.630000e-02   p_cons 5.464500e-01   p_joint 2.566000e-01

Outputting figure to mutsig2_images.part000000000200/ZZZ3.6_2756_20000_0.0963_0.54645_0.2566.png
                gene_name: ZZZ3
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.096 
        ci_ks_bounds_left: 0.092 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 38 percent done.
ZNF808
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.905383e-02	ci left: 6.359324e-01	ci right 6.547828e-01	k: 6454	n:10000
KS ci ratio: 2.883207e-02	ci left: 6.394525e-01	ci right 6.582607e-01	k: 6489	n:10000
ZNF808   10000 perm   2 sec   (5471 perm/sec)   p_kst 6.489000e-01   p_cons 6.454000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000200/ZNF808.5_2724_10000_0.6489_0.6454_1.png
                gene_name: ZNF808
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 40 percent done.
ZNF81
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.514284e-02	ci left: 4.200689e-01	ci right 4.395720e-01	k: 4298	n:10000
Cons ci ratio: 4.895376e-02	ci left: 3.810207e-01	ci right 4.002431e-01	k: 3906	n:10000
KS ci ratio: 4.831215e-02	ci left: 3.872920e-01	ci right 4.065681e-01	k: 3969	n:10000
ZNF81   10000 perm   2 sec   (5541 perm/sec)   p_kst 3.969000e-01   p_cons 3.906000e-01   p_joint 4.298000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF81.5_2002_10000_0.3969_0.3906_0.4298.png
                gene_name: ZNF81
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 42 percent done.
ZNF93
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.575560e-02	ci left: 2.535008e-01	ci right 2.708379e-01	k: 2621	n:10000
Cons ci ratio: 5.551626e-02	ci left: 3.233656e-01	ci right 3.419320e-01	k: 3326	n:10000
KS ci ratio: 7.342460e-02	ci left: 2.135905e-01	ci right 2.299719e-01	k: 2217	n:10000
ZNF93   10000 perm   2 sec   (6163 perm/sec)   p_kst 2.217000e-01   p_cons 3.326000e-01   p_joint 2.621000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF93.5_1879_10000_0.2217_0.3326_0.2621.png
                gene_name: ZNF93
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 43 percent done.
ZSWIM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.093325e-01	ci left: 1.076389e-01	ci right 1.201870e-01	k: 1138	n:10000
Cons ci ratio: 1.635851e-01	ci left: 4.984277e-02	ci right 5.881908e-02	k: 542	n:10000
KS ci ratio: 6.555229e-02	ci left: 2.546878e-01	ci right 2.720503e-01	k: 2633	n:10000
ZSWIM3   10000 perm   2 sec   (6120 perm/sec)   p_kst 2.633000e-01   p_cons 5.420000e-02   p_joint 1.138000e-01

Joint ci ratio: 8.437829e-02	ci left: 9.327545e-02	ci right 1.015420e-01	k: 1947	n:20000
Cons ci ratio: 1.138029e-01	ci left: 5.280458e-02	ci right 5.922527e-02	k: 1119	n:20000
KS ci ratio: 4.762228e-02	ci left: 2.469863e-01	ci right 2.590856e-01	k: 5060	n:20000
ZSWIM3   20000 perm   4 sec   (5409 perm/sec)   p_kst 2.530000e-01   p_cons 5.595000e-02   p_joint 9.735000e-02

Joint ci ratio: 6.114270e-02	ci left: 1.168035e-01	ci right 1.242035e-01	k: 3614	n:30000
Cons ci ratio: 9.692741e-02	ci left: 4.918871e-02	ci right 5.423189e-02	k: 1550	n:30000
KS ci ratio: 3.876560e-02	ci left: 2.492472e-01	ci right 2.591338e-01	k: 7625	n:30000
ZSWIM3   30000 perm   6 sec   (5134 perm/sec)   p_kst 2.541667e-01   p_cons 5.166667e-02   p_joint 1.204667e-01

Outputting figure to mutsig2_images.part000000000200/ZSWIM3.5_2099_30000_0.25417_0.051667_0.12047.png
                gene_name: ZSWIM3
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.052 
      ci_cons_bounds_left: 0.049 
     ci_cons_bounds_right: 0.054 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 45 percent done.
ZNF836
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.094230e-02	ci left: 2.255330e-01	ci right 2.422223e-01	k: 2338	n:10000
Cons ci ratio: 5.999280e-02	ci left: 2.901356e-01	ci right 3.081815e-01	k: 2991	n:10000
KS ci ratio: 1.093325e-01	ci left: 1.076389e-01	ci right 1.201870e-01	k: 1138	n:10000
ZNF836   10000 perm   2 sec   (5823 perm/sec)   p_kst 1.138000e-01   p_cons 2.991000e-01   p_joint 2.338000e-01

Joint ci ratio: 6.684975e-02	ci left: 1.417739e-01	ci right 1.516291e-01	k: 2933	n:20000
Cons ci ratio: 4.211496e-02	ci left: 2.958399e-01	ci right 3.086177e-01	k: 6044	n:20000
KS ci ratio: 7.659211e-02	ci left: 1.113472e-01	ci right 1.202648e-01	k: 2315	n:20000
ZNF836   20000 perm   4 sec   (5180 perm/sec)   p_kst 1.157500e-01   p_cons 3.022000e-01   p_joint 1.466500e-01

Outputting figure to mutsig2_images.part000000000200/ZNF836.4_2821_20000_0.11575_0.3022_0.14665.png
                gene_name: ZNF836
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 47 percent done.
ZPBP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.665833e-02	ci left: 5.235635e-01	ci right 5.432170e-01	k: 5334	n:10000
Cons ci ratio: 2.529504e-02	ci left: 6.969615e-01	ci right 7.149184e-01	k: 7060	n:10000
KS ci ratio: 6.613156e-02	ci left: 2.513249e-01	ci right 2.686151e-01	k: 2599	n:10000
ZPBP   10000 perm   2 sec   (6590 perm/sec)   p_kst 2.599000e-01   p_cons 7.060000e-01   p_joint 5.334000e-01

Outputting figure to mutsig2_images.part000000000200/ZPBP.4_1088_10000_0.2599_0.706_0.5334.png
                gene_name: ZPBP
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 49 percent done.
ZSCAN18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.310533e-02	ci left: 3.432297e-01	ci right 3.620562e-01	k: 3526	n:10000
Cons ci ratio: 7.108113e-02	ci left: 2.248418e-01	ci right 2.415139e-01	k: 2331	n:10000
KS ci ratio: 4.751436e-02	ci left: 3.952579e-01	ci right 4.145975e-01	k: 4049	n:10000
ZSCAN18   10000 perm   2 sec   (5753 perm/sec)   p_kst 4.049000e-01   p_cons 2.331000e-01   p_joint 3.526000e-01

Outputting figure to mutsig2_images.part000000000200/ZSCAN18.4_1729_10000_0.4049_0.2331_0.3526.png
                gene_name: ZSCAN18
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 51 percent done.
ZSWIM4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.623654e-02	ci left: 6.814356e-01	ci right 6.996533e-01	k: 6906	n:10000
Cons ci ratio: 8.898945e-02	ci left: 1.552204e-01	ci right 1.697768e-01	k: 1624	n:10000
KS ci ratio: 2.745920e-02	ci left: 6.614910e-01	ci right 6.800095e-01	k: 6708	n:10000
ZSWIM4   10000 perm   2 sec   (5380 perm/sec)   p_kst 6.708000e-01   p_cons 1.624000e-01   p_joint 6.906000e-01

Outputting figure to mutsig2_images.part000000000200/ZSWIM4.4_3022_10000_0.6708_0.1624_0.6906.png
                gene_name: ZSWIM4
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 53 percent done.
ZXDA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.003574e-02	ci left: 2.898383e-01	ci right 3.078790e-01	k: 2988	n:10000
Cons ci ratio: 6.825929e-02	ci left: 2.394614e-01	ci right 2.564857e-01	k: 2479	n:10000
KS ci ratio: 9.342158e-02	ci left: 1.426620e-01	ci right 1.567427e-01	k: 1496	n:10000
ZXDA   10000 perm   2 sec   (5974 perm/sec)   p_kst 1.496000e-01   p_cons 2.479000e-01   p_joint 2.988000e-01

Outputting figure to mutsig2_images.part000000000200/ZXDA.4_2404_10000_0.1496_0.2479_0.2988.png
                gene_name: ZXDA
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 55 percent done.
ZNF823
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.637034e-02	ci left: 4.070126e-01	ci right 4.264360e-01	k: 4167	n:10000
Cons ci ratio: 8.866392e-02	ci left: 1.562022e-01	ci right 1.707944e-01	k: 1634	n:10000
KS ci ratio: 3.265380e-02	ci left: 5.805862e-01	ci right 5.999612e-01	k: 5903	n:10000
ZNF823   10000 perm   2 sec   (6635 perm/sec)   p_kst 5.903000e-01   p_cons 1.634000e-01   p_joint 4.167000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF823.3_1849_10000_0.5903_0.1634_0.4167.png
                gene_name: ZNF823
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 57 percent done.
ZNF828
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.668649e-02	ci left: 4.037247e-01	ci right 4.231258e-01	k: 4134	n:10000
Cons ci ratio: 2.222147e-02	ci left: 7.482674e-01	ci right 7.651828e-01	k: 7568	n:10000
KS ci ratio: 8.525785e-02	ci left: 1.670085e-01	ci right 1.819816e-01	k: 1744	n:10000
ZNF828   10000 perm   2 sec   (5977 perm/sec)   p_kst 1.744000e-01   p_cons 7.568000e-01   p_joint 4.134000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF828.3_2443_10000_0.1744_0.7568_0.4134.png
                gene_name: ZNF828
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 58 percent done.
ZNF829
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.669516e-02	ci left: 5.230630e-01	ci right 5.427178e-01	k: 5329	n:10000
Cons ci ratio: 7.164216e-02	ci left: 2.220775e-01	ci right 2.386798e-01	k: 2303	n:10000
KS ci ratio: 2.441419e-02	ci left: 7.115912e-01	ci right 7.292802e-01	k: 7205	n:10000
ZNF829   10000 perm   2 sec   (6199 perm/sec)   p_kst 7.205000e-01   p_cons 2.303000e-01   p_joint 5.329000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF829.3_1566_10000_0.7205_0.2303_0.5329.png
                gene_name: ZNF829
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 60 percent done.
ZNF85
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.527596e-02	ci left: 8.614127e-01	ci right 8.747721e-01	k: 8682	n:10000
KS ci ratio: 2.685829e-02	ci left: 6.712594e-01	ci right 6.896353e-01	k: 6805	n:10000
ZNF85   10000 perm   2 sec   (5997 perm/sec)   p_kst 6.805000e-01   p_cons 8.682000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000200/ZNF85.3_1804_10000_0.6805_0.8682_1.png
                gene_name: ZNF85
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
ZNF862
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.840271e-02	ci left: 5.003504e-01	ci right 5.200436e-01	k: 5102	n:10000
Cons ci ratio: 4.168713e-02	ci left: 4.593790e-01	ci right 4.790390e-01	k: 4692	n:10000
KS ci ratio: 4.829198e-02	ci left: 3.874911e-01	ci right 4.067689e-01	k: 3971	n:10000
ZNF862   10000 perm   2 sec   (5481 perm/sec)   p_kst 3.971000e-01   p_cons 4.692000e-01   p_joint 5.102000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF862.3_3542_10000_0.3971_0.4692_0.5102.png
                gene_name: ZNF862
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 64 percent done.
ZNRF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.543425e-02	ci left: 2.553802e-01	ci right 2.727574e-01	k: 2640	n:10000
Cons ci ratio: 3.602251e-02	ci left: 5.322739e-01	ci right 5.519016e-01	k: 5421	n:10000
KS ci ratio: 7.210993e-02	ci left: 2.198072e-01	ci right 2.363514e-01	k: 2280	n:10000
ZNRF3   10000 perm   2 sec   (5757 perm/sec)   p_kst 2.280000e-01   p_cons 5.421000e-01   p_joint 2.640000e-01

Outputting figure to mutsig2_images.part000000000200/ZNRF3.3_2543_10000_0.228_0.5421_0.264.png
                gene_name: ZNRF3
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 66 percent done.
ZNRF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.932590e-02	ci left: 3.774378e-01	ci right 3.966281e-01	k: 3870	n:10000
Cons ci ratio: 4.000985e-02	ci left: 4.798565e-01	ci right 4.995495e-01	k: 4897	n:10000
KS ci ratio: 5.004015e-02	ci left: 3.706717e-01	ci right 3.897981e-01	k: 3802	n:10000
ZNRF4   10000 perm   2 sec   (6301 perm/sec)   p_kst 3.802000e-01   p_cons 4.897000e-01   p_joint 3.870000e-01

Outputting figure to mutsig2_images.part000000000200/ZNRF4.3_1294_10000_0.3802_0.4897_0.387.png
                gene_name: ZNRF4
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 68 percent done.
ZRANB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.686115e-02	ci left: 2.471717e-01	ci right 2.643708e-01	k: 2557	n:10000
Cons ci ratio: 4.741593e-02	ci left: 3.962539e-01	ci right 4.156010e-01	k: 4059	n:10000
KS ci ratio: 6.686115e-02	ci left: 2.471717e-01	ci right 2.643708e-01	k: 2557	n:10000
ZRANB1   10000 perm   2 sec   (5920 perm/sec)   p_kst 2.557000e-01   p_cons 4.059000e-01   p_joint 2.557000e-01

Outputting figure to mutsig2_images.part000000000200/ZRANB1.3_2163_10000_0.2557_0.4059_0.2557.png
                gene_name: ZRANB1
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 70 percent done.
ZSCAN10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.979314e-02	ci left: 2.915232e-01	ci right 3.095931e-01	k: 3005	n:10000
Cons ci ratio: 1.144422e-01	ci left: 9.895988e-02	ci right 1.110713e-01	k: 1049	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
ZSCAN10   10000 perm   2 sec   (6090 perm/sec)   p_kst 1   p_cons 1.049000e-01   p_joint 3.005000e-01

Joint ci ratio: 2.473829e-02	ci left: 5.496822e-01	ci right 5.635013e-01	k: 11132	n:20000
Cons ci ratio: 8.083843e-02	ci left: 1.009314e-01	ci right 1.094838e-01	k: 2103	n:20000
KS ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
ZSCAN10   20000 perm   4 sec   (5393 perm/sec)   p_kst 1   p_cons 1.051500e-01   p_joint 5.566000e-01

Outputting figure to mutsig2_images.part000000000200/ZSCAN10.3_2198_20000_1_0.10515_0.5566.png
                gene_name: ZSCAN10
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.56 

Current progress: 72 percent done.
ZSCAN22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.598625e-02	ci left: 5.327746e-01	ci right 5.524006e-01	k: 5426	n:10000
Cons ci ratio: 9.751082e-03	ci left: 9.370311e-01	ci right 9.463095e-01	k: 9418	n:10000
KS ci ratio: 6.853489e-02	ci left: 2.379790e-01	ci right 2.549689e-01	k: 2464	n:10000
ZSCAN22   10000 perm   2 sec   (6299 perm/sec)   p_kst 2.464000e-01   p_cons 9.418000e-01   p_joint 5.426000e-01

Outputting figure to mutsig2_images.part000000000200/ZSCAN22.3_1484_10000_0.2464_0.9418_0.5426.png
                gene_name: ZSCAN22
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 74 percent done.
ZSCAN5A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.780486e-02	ci left: 2.419322e-01	ci right 2.590133e-01	k: 2504	n:10000
Cons ci ratio: 3.584152e-02	ci left: 5.347774e-01	ci right 5.543966e-01	k: 5446	n:10000
KS ci ratio: 1.221968e-01	ci left: 8.757121e-02	ci right 9.906697e-02	k: 932	n:10000
ZSCAN5A   10000 perm   2 sec   (6235 perm/sec)   p_kst 9.320000e-02   p_cons 5.446000e-01   p_joint 2.504000e-01

Joint ci ratio: 3.668711e-02	ci left: 3.566796e-01	ci right 3.700602e-01	k: 7267	n:20000
Cons ci ratio: 2.565613e-02	ci left: 5.316109e-01	ci right 5.454779e-01	k: 10771	n:20000
KS ci ratio: 8.702652e-02	ci left: 8.807791e-02	ci right 9.614113e-02	k: 1841	n:20000
ZSCAN5A   20000 perm   4 sec   (5518 perm/sec)   p_kst 9.205000e-02   p_cons 5.385500e-01   p_joint 3.633500e-01

Outputting figure to mutsig2_images.part000000000200/ZSCAN5A.3_1507_20000_0.09205_0.53855_0.36335.png
                gene_name: ZSCAN5A
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.092 
        ci_ks_bounds_left: 0.088 
       ci_ks_bounds_right: 0.096 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 75 percent done.
ZXDC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.247192e-01	ci left: 8.426661e-02	ci right 9.557360e-02	k: 898	n:10000
Cons ci ratio: 2.417193e-02	ci left: 7.156290e-01	ci right 7.332401e-01	k: 7245	n:10000
KS ci ratio: 2.998689e-01	ci left: 1.427992e-02	ci right 1.940710e-02	k: 167	n:10000
ZXDC   10000 perm   2 sec   (4526 perm/sec)   p_kst 1.670000e-02   p_cons 7.245000e-01   p_joint 8.980000e-02

Joint ci ratio: 1.461933e-01	ci left: 3.215814e-02	ci right 3.727829e-02	k: 693	n:20000
Cons ci ratio: 1.650467e-02	ci left: 7.320984e-01	ci right 7.443323e-01	k: 14765	n:20000
KS ci ratio: 1.965473e-01	ci left: 1.758116e-02	ci right 2.146030e-02	k: 389	n:20000
ZXDC   20000 perm   4 sec   (4538 perm/sec)   p_kst 1.945000e-02   p_cons 7.382500e-01   p_joint 3.465000e-02

Joint ci ratio: 9.396171e-02	ci left: 5.225117e-02	ci right 5.743546e-02	k: 1644	n:30000
Cons ci ratio: 1.349757e-02	ci left: 7.326157e-01	ci right 7.426049e-01	k: 22129	n:30000
KS ci ratio: 1.572233e-01	ci left: 1.870206e-02	ci right 2.192512e-02	k: 608	n:30000
ZXDC   30000 perm   7 sec   (4502 perm/sec)   p_kst 2.026667e-02   p_cons 7.376333e-01   p_joint 5.480000e-02

Joint ci ratio: 8.478836e-02	ci left: 4.857025e-02	ci right 5.289527e-02	k: 2028	n:40000
Cons ci ratio: 1.172651e-02	ci left: 7.320528e-01	ci right 7.407129e-01	k: 29456	n:40000
KS ci ratio: 1.409289e-01	ci left: 1.763632e-02	ci right 2.033415e-02	k: 758	n:40000
ZXDC   40000 perm   9 sec   (4392 perm/sec)   p_kst 1.895000e-02   p_cons 7.364000e-01   p_joint 5.070000e-02

Joint ci ratio: 7.262418e-02	ci left: 5.305689e-02	ci right 5.707496e-02	k: 2752	n:50000
Cons ci ratio: 1.049123e-02	ci left: 7.324141e-01	ci right 7.401585e-01	k: 36815	n:50000
KS ci ratio: 1.263738e-01	ci left: 1.768566e-02	ci right 2.009066e-02	k: 943	n:50000
ZXDC   50000 perm   12 sec   (4251 perm/sec)   p_kst 1.886000e-02   p_cons 7.363000e-01   p_joint 5.504000e-02

Joint ci ratio: 7.257632e-02	ci left: 4.468139e-02	ci right 4.806267e-02	k: 2781	n:60000
Cons ci ratio: 9.590709e-03	ci left: 7.322022e-01	ci right 7.392750e-01	k: 44145	n:60000
KS ci ratio: 1.158225e-01	ci left: 1.764727e-02	ci right 1.983296e-02	k: 1123	n:60000
ZXDC   60000 perm   14 sec   (4213 perm/sec)   p_kst 1.871667e-02   p_cons 7.357500e-01   p_joint 4.635000e-02

Joint ci ratio: 6.303310e-02	ci left: 5.070441e-02	ci right 5.401853e-02	k: 3664	n:70000
Cons ci ratio: 8.888248e-03	ci left: 7.320723e-01	ci right 7.386225e-01	k: 51475	n:70000
KS ci ratio: 1.083019e-01	ci left: 1.737556e-02	ci right 1.937893e-02	k: 1285	n:70000
ZXDC   70000 perm   17 sec   (4165 perm/sec)   p_kst 1.835714e-02   p_cons 7.353571e-01   p_joint 5.234286e-02

Joint ci ratio: 6.717759e-02	ci left: 3.945188e-02	ci right 4.220655e-02	k: 3265	n:80000
Cons ci ratio: 8.331708e-03	ci left: 7.314629e-01	ci right 7.375951e-01	k: 58763	n:80000
KS ci ratio: 1.017210e-01	ci left: 1.729714e-02	ci right 1.916303e-02	k: 1457	n:80000
ZXDC   80000 perm   19 sec   (4115 perm/sec)   p_kst 1.821250e-02   p_cons 7.345375e-01   p_joint 4.081250e-02

Joint ci ratio: 5.547920e-02	ci left: 5.109562e-02	ci right 5.402219e-02	k: 4729	n:90000
Cons ci ratio: 7.869845e-03	ci left: 7.309106e-01	ci right 7.366965e-01	k: 66043	n:90000
KS ci ratio: 9.774830e-02	ci left: 1.669673e-02	ci right 1.842345e-02	k: 1579	n:90000
ZXDC   90000 perm   22 sec   (4062 perm/sec)   p_kst 1.754444e-02   p_cons 7.338111e-01   p_joint 5.254444e-02

Outputting figure to mutsig2_images.part000000000200/ZXDC.3_2623_90000_0.017544_0.73381_0.052544.png
                gene_name: ZXDC
               theta_stop: 0.098 
                    nperm: 90000 
                     p_ks: 0.018 
        ci_ks_bounds_left: 0.017 
       ci_ks_bounds_right: 0.018 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.053 
     ci_joint_bounds_left: 0.051 
    ci_joint_bounds_right: 0.054 

Current progress: 77 percent done.
ZYG11B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.761920e-02	ci left: 3.071901e-01	ci right 3.255170e-01	k: 3163	n:10000
Cons ci ratio: 3.561095e-02	ci left: 5.379823e-01	ci right 5.575898e-01	k: 5478	n:10000
KS ci ratio: 8.988259e-02	ci left: 1.525700e-01	ci right 1.670288e-01	k: 1597	n:10000
ZYG11B   10000 perm   2 sec   (6049 perm/sec)   p_kst 1.597000e-01   p_cons 5.478000e-01   p_joint 3.163000e-01

Outputting figure to mutsig2_images.part000000000200/ZYG11B.3_2291_10000_0.1597_0.5478_0.3163.png
                gene_name: ZYG11B
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 79 percent done.
ZZEF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.484613e-02	ci left: 8.679499e-01	ci right 8.810311e-01	k: 8746	n:10000
KS ci ratio: 2.179890e-02	ci left: 7.553490e-01	ci right 7.720971e-01	k: 7638	n:10000
ZZEF1   10000 perm   2 sec   (4106 perm/sec)   p_kst 7.638000e-01   p_cons 8.746000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000200/ZZEF1.3_9106_10000_0.7638_0.8746_1.png
                gene_name: ZZEF1
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
ZNF8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.317481e-02	ci left: 7.322943e-01	ci right 7.495652e-01	k: 7410	n:10000
Cons ci ratio: 5.569957e-03	ci left: 9.773822e-01	ci right 9.829331e-01	k: 9803	n:10000
KS ci ratio: 6.809499e-02	ci left: 2.403508e-01	ci right 2.573957e-01	k: 2488	n:10000
ZNF8   10000 perm   2 sec   (6510 perm/sec)   p_kst 2.488000e-01   p_cons 9.803000e-01   p_joint 7.410000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF8.2_1744_10000_0.2488_0.9803_0.741.png
                gene_name: ZNF8
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 83 percent done.
ZNF839
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.736711e-02	ci left: 3.090749e-01	ci right 3.274310e-01	k: 3182	n:10000
Cons ci ratio: 6.310950e-02	ci left: 2.695318e-01	ci right 2.871975e-01	k: 2783	n:10000
KS ci ratio: 6.068661e-02	ci left: 2.853789e-01	ci right 3.033411e-01	k: 2943	n:10000
ZNF839   10000 perm   2 sec   (6014 perm/sec)   p_kst 2.943000e-01   p_cons 2.783000e-01   p_joint 3.182000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF839.2_2816_10000_0.2943_0.2783_0.3182.png
                gene_name: ZNF839
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 85 percent done.
ZNF846
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.646289e-02	ci left: 8.429516e-01	ci right 8.570439e-01	k: 8501	n:10000
Cons ci ratio: 4.056613e-02	ci left: 4.729622e-01	ci right 4.926478e-01	k: 4828	n:10000
KS ci ratio: 4.056430e-03	ci left: 9.873032e-01	ci right 9.914042e-01	k: 9895	n:10000
ZNF846   10000 perm   1 sec   (6772 perm/sec)   p_kst 9.895000e-01   p_cons 4.828000e-01   p_joint 8.501000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF846.2_1622_10000_0.9895_0.4828_0.8501.png
                gene_name: ZNF846
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 87 percent done.
ZNF883
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.810093e-02	ci left: 3.893828e-01	ci right 4.086761e-01	k: 3990	n:10000
Cons ci ratio: 5.173814e-02	ci left: 3.551569e-01	ci right 3.741220e-01	k: 3646	n:10000
KS ci ratio: 6.303106e-02	ci left: 2.700268e-01	ci right 2.877022e-01	k: 2788	n:10000
ZNF883   10000 perm   1 sec   (7102 perm/sec)   p_kst 2.788000e-01   p_cons 3.646000e-01   p_joint 3.990000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF883.2_1142_10000_0.2788_0.3646_0.399.png
                gene_name: ZNF883
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 89 percent done.
ZNRF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.152538e-02	ci left: 5.975480e-01	ci right 6.167896e-01	k: 6072	n:10000
KS ci ratio: 5.196217e-02	ci left: 3.531686e-01	ci right 3.721115e-01	k: 3626	n:10000
ZNRF2   10000 perm   1 sec   (7339 perm/sec)   p_kst 3.626000e-01   p_cons 6.072000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000200/ZNRF2.2_745_10000_0.3626_0.6072_1.png
                gene_name: ZNRF2
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
ZP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.072890e-02	ci left: 4.709642e-01	ci right 4.906470e-01	k: 4808	n:10000
Cons ci ratio: 5.742002e-02	ci left: 3.086781e-01	ci right 3.270281e-01	k: 3178	n:10000
KS ci ratio: 6.503267e-02	ci left: 2.577545e-01	ci right 2.751817e-01	k: 2664	n:10000
ZP2   10000 perm   2 sec   (6236 perm/sec)   p_kst 2.664000e-01   p_cons 3.178000e-01   p_joint 4.808000e-01

Outputting figure to mutsig2_images.part000000000200/ZP2.2_2314_10000_0.2664_0.3178_0.4808.png
                gene_name: ZP2
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 92 percent done.
ZSCAN20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.445662e-02	ci left: 7.108847e-01	ci right 7.285871e-01	k: 7198	n:10000
Cons ci ratio: 5.524235e-02	ci left: 3.255497e-01	ci right 3.441466e-01	k: 3348	n:10000
KS ci ratio: 7.595156e-03	ci left: 9.600562e-01	ci right 9.674704e-01	k: 9639	n:10000
ZSCAN20   10000 perm   2 sec   (5950 perm/sec)   p_kst 9.639000e-01   p_cons 3.348000e-01   p_joint 7.198000e-01

Outputting figure to mutsig2_images.part000000000200/ZSCAN20.2_3160_10000_0.9639_0.3348_0.7198.png
                gene_name: ZSCAN20
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 94 percent done.
ZSCAN21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.842942e-02	ci left: 8.113112e-01	ci right 8.265025e-01	k: 8190	n:10000
KS ci ratio: 2.506982e-02	ci left: 7.006935e-01	ci right 7.185842e-01	k: 7097	n:10000
ZSCAN21   10000 perm   2 sec   (6475 perm/sec)   p_kst 7.097000e-01   p_cons 8.190000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000200/ZSCAN21.2_1434_10000_0.7097_0.819_1.png
                gene_name: ZSCAN21
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
ZWILCH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.072890e-02	ci left: 4.709642e-01	ci right 4.906470e-01	k: 4808	n:10000
KS ci ratio: 9.094428e-03	ci left: 9.445056e-01	ci right 9.532306e-01	k: 9490	n:10000
ZWILCH   10000 perm   2 sec   (6435 perm/sec)   p_kst 9.490000e-01   p_cons 4.808000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000200/ZWILCH.2_1848_10000_0.949_0.4808_1.png
                gene_name: ZWILCH
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
ZWINT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.735644e-02	ci left: 2.444035e-01	ci right 2.615407e-01	k: 2529	n:10000
Cons ci ratio: 7.939167e-02	ci left: 1.881605e-01	ci right 2.038170e-01	k: 1959	n:10000
KS ci ratio: 4.029907e-02	ci left: 4.762592e-01	ci right 4.959489e-01	k: 4861	n:10000
ZWINT   10000 perm   1 sec   (6969 perm/sec)   p_kst 4.861000e-01   p_cons 1.959000e-01   p_joint 2.529000e-01

Outputting figure to mutsig2_images.part000000000200/ZWINT.2_866_10000_0.4861_0.1959_0.2529.png
                gene_name: ZWINT
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/227015/iteration1/scatter.0000000200
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.170.3957/ -whichjob 200 -i LUSC -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/LUSC/1910420/0.ProcessCoverageForMutSig.Finished/LUSC.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/LUSC/1910331/0.MutSigPreprocess.Finished/LUSC.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

*** Scatter stdandard err:

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:03:01 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19673
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:03:04 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19679
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:03:11 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19682
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:03:09 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19694
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:03:21 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19699
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:03:20 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19706
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:03:19 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19711
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:03:28 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19719
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:03:29 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19724
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:03:28 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19727
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:03:36 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19735
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:03:36 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19742
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:03:37 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19751
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:03:46 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19758
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:03:48 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19769
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:03:56 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19779
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:03:56 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19781
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:03:56 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19788
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:03:58 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19791
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:04:00 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19794
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:04:06 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19798
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:04:17 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19802
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:04:12 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19805
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:04:15 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19811
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:04:15 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19815
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:04:23 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19823
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:04:23 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19827
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:04:26 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19832
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:04:33 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19837
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:04:33 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19839
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:04:33 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19842
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:04:33 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19844
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:04:33 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19847
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:04:37 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19849
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 17:09:02 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19851
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:04:42 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19855
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:04:43 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19859
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 17:33:03 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19861
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:04:58 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19865
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:04:52 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19868
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:04:52 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19872
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:04:53 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19875
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:05:04 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19879
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:05:07 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19885
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:05:07 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19889
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:05:02 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19896
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:05:11 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19899
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:05:11 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19905
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:05:11 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19909
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:05:14 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19913
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:05:25 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19920
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:05:24 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19923
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:05:22 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19931
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:05:23 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19935
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:05:33 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19941
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:05:31 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19945
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:05:37 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19950
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:05:37 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19953
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:05:37 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19958
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:05:45 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19962
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:05:45 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19965
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:05:46 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19968
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:05:54 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19971
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:05:59 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19976
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:05:55 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19981
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:06:05 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19985
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:06:04 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19988
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:06:05 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19993
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 17:30:16 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19997
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:06:13 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20002
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:06:14 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20007
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:06:24 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20010
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:06:26 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20016
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:06:24 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20023
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:06:35 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20028
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:06:32 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20041
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:06:35 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20046
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:06:43 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20051
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:06:40 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20060
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:06:41 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20065
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 17:04:58 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20067
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:06:51 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20070
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:06:54 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20075
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:07:06 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20076
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:07:06 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20080
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:06:58 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20084
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:07:06 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20088
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:07:06 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20091
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:07:10 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20094
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:07:10 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20099
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:07:13 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20103
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:07:29 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20105
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:07:28 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20108
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:07:31 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20113
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:07:31 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20117
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:07:41 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20121
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:07:43 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20126
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:07:51 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20132
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:08:02 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20139
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:08:02 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20145
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:08:02 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20153
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:08:12 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20157
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:08:13 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20160
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 17:03:42 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20162
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:08:12 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20166
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:08:21 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20171
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:08:36 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20175
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:08:46 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20179
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:08:59 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20183
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:08:54 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20191
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:09:04 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20195
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:09:12 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20198
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:09:12 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20202
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:09:12 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20206
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:09:12 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20210
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:09:36 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20214
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:10:13 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20219
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:10:14 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20224
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:10:14 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20226
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:10:14 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20231
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:10:42 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20237
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:11:13 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20242
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:11:13 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20247
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:11:13 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20250
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:11:15 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20255
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:11:24 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20260
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:12:09 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20268
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:12:09 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20276
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:12:16 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20284
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:12:24 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20292
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:12:24 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20298
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:12:40 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20304
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:13:16 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20313
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:13:19 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20322
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:13:27 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20329
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:14:00 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20333
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:14:02 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20339
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:14:18 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20348
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:14:32 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20355
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:14:46 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20361
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 17:11:12 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20363
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:15:08 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20368
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:15:16 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20373
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:15:16 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20381
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:15:23 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20385
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:15:23 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20393
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:15:46 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20400
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:15:58 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20404
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:16:34 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20409
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:16:28 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20415
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:16:44 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20423
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:16:44 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20429
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:16:44 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20430
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:16:58 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20433
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 17:38:22 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20436
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:17:14 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20439
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:17:13 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20440
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:17:35 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20442
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:17:28 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20445
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:17:44 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20448
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 17:17:59 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20453
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:18:28 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20456
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:18:22 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20459
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:18:44 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20464
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:19:22 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20469
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:20:16 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20475
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:20:32 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20481
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:20:38 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20486
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:20:45 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20491
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:20:45 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20497
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:21:14 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20504
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:21:28 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20509
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:21:41 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20511
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:21:43 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20516
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:21:49 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20519
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:22:04 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20526
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:22:27 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20532
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:22:47 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20538
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:22:44 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20542
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 17:37:14 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20547
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:22:58 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20553
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:23:19 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20558
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:23:26 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20564
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:23:40 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20571
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:23:55 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20577
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:24:18 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20582
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:24:46 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20584
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:24:46 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20586
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:25:23 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20589
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:25:30 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20592
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:25:29 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20593
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:25:37 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20596
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:25:52 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20604
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:26:07 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20607
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:26:21 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20610
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:26:21 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20613
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:26:52 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20617
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:26:57 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20623
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:27:34 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20628
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 15:27:41 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20631
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.
*** Scatter retry log:
==> scatter.0000000001.tries <==
1
==> scatter.0000000002.tries <==
1
==> scatter.0000000003.tries <==
1
==> scatter.0000000004.tries <==
1
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1
==> scatter.0000000006.tries <==
1
==> scatter.0000000007.tries <==
1
==> scatter.0000000008.tries <==
1
==> scatter.0000000009.tries <==
1
==> scatter.0000000010.tries <==
1
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1
==> scatter.0000000012.tries <==
1
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1
==> scatter.0000000014.tries <==
1
==> scatter.0000000015.tries <==
1
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1
==> scatter.0000000017.tries <==
1
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1
==> scatter.0000000019.tries <==
1
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1
==> scatter.0000000021.tries <==
1
==> scatter.0000000022.tries <==
1
==> scatter.0000000023.tries <==
1
==> scatter.0000000024.tries <==
1
==> scatter.0000000025.tries <==
1
==> scatter.0000000026.tries <==
1
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1
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1
==> scatter.0000000029.tries <==
1
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1
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1
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1
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1
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1
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1
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1
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2
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1
==> scatter.0000000040.tries <==
1
==> scatter.0000000041.tries <==
1
==> scatter.0000000042.tries <==
1
==> scatter.0000000043.tries <==
1
==> scatter.0000000044.tries <==
1
==> scatter.0000000045.tries <==
1
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1
==> scatter.0000000047.tries <==
1
==> scatter.0000000048.tries <==
1
==> scatter.0000000049.tries <==
1
==> scatter.0000000050.tries <==
1
==> scatter.0000000051.tries <==
1
==> scatter.0000000052.tries <==
1
==> scatter.0000000053.tries <==
1
==> scatter.0000000054.tries <==
1
==> scatter.0000000055.tries <==
1
==> scatter.0000000056.tries <==
1
==> scatter.0000000057.tries <==
1
==> scatter.0000000058.tries <==
1
==> scatter.0000000059.tries <==
1
==> scatter.0000000060.tries <==
1
==> scatter.0000000061.tries <==
1
==> scatter.0000000062.tries <==
1
==> scatter.0000000063.tries <==
1
==> scatter.0000000064.tries <==
1
==> scatter.0000000065.tries <==
1
==> scatter.0000000066.tries <==
1
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1
==> scatter.0000000068.tries <==
1
==> scatter.0000000069.tries <==
2
==> scatter.0000000070.tries <==
1
==> scatter.0000000071.tries <==
1
==> scatter.0000000072.tries <==
1
==> scatter.0000000073.tries <==
1
==> scatter.0000000074.tries <==
1
==> scatter.0000000075.tries <==
1
==> scatter.0000000076.tries <==
1
==> scatter.0000000077.tries <==
1
==> scatter.0000000078.tries <==
1
==> scatter.0000000079.tries <==
1
==> scatter.0000000080.tries <==
1
==> scatter.0000000081.tries <==
2
==> scatter.0000000082.tries <==
1
==> scatter.0000000083.tries <==
1
==> scatter.0000000084.tries <==
1
==> scatter.0000000085.tries <==
1
==> scatter.0000000086.tries <==
1
==> scatter.0000000087.tries <==
1
==> scatter.0000000088.tries <==
1
==> scatter.0000000089.tries <==
1
==> scatter.0000000090.tries <==
1
==> scatter.0000000091.tries <==
1
==> scatter.0000000092.tries <==
1
==> scatter.0000000093.tries <==
1
==> scatter.0000000094.tries <==
1
==> scatter.0000000095.tries <==
1
==> scatter.0000000096.tries <==
1
==> scatter.0000000097.tries <==
1
==> scatter.0000000098.tries <==
1
==> scatter.0000000099.tries <==
1
==> scatter.0000000100.tries <==
1
==> scatter.0000000101.tries <==
1
==> scatter.0000000102.tries <==
1
==> scatter.0000000103.tries <==
1
==> scatter.0000000104.tries <==
2
==> scatter.0000000105.tries <==
1
==> scatter.0000000106.tries <==
1
==> scatter.0000000107.tries <==
1
==> scatter.0000000108.tries <==
1
==> scatter.0000000109.tries <==
1
==> scatter.0000000110.tries <==
1
==> scatter.0000000111.tries <==
1
==> scatter.0000000112.tries <==
1
==> scatter.0000000113.tries <==
1
==> scatter.0000000114.tries <==
1
==> scatter.0000000115.tries <==
1
==> scatter.0000000116.tries <==
1
==> scatter.0000000117.tries <==
1
==> scatter.0000000118.tries <==
1
==> scatter.0000000119.tries <==
1
==> scatter.0000000120.tries <==
1
==> scatter.0000000121.tries <==
1
==> scatter.0000000122.tries <==
1
==> scatter.0000000123.tries <==
1
==> scatter.0000000124.tries <==
1
==> scatter.0000000125.tries <==
1
==> scatter.0000000126.tries <==
1
==> scatter.0000000127.tries <==
1
==> scatter.0000000128.tries <==
1
==> scatter.0000000129.tries <==
1
==> scatter.0000000130.tries <==
1
==> scatter.0000000131.tries <==
1
==> scatter.0000000132.tries <==
1
==> scatter.0000000133.tries <==
1
==> scatter.0000000134.tries <==
1
==> scatter.0000000135.tries <==
1
==> scatter.0000000136.tries <==
1
==> scatter.0000000137.tries <==
1
==> scatter.0000000138.tries <==
1
==> scatter.0000000139.tries <==
1
==> scatter.0000000140.tries <==
1
==> scatter.0000000141.tries <==
2
==> scatter.0000000142.tries <==
1
==> scatter.0000000143.tries <==
1
==> scatter.0000000144.tries <==
1
==> scatter.0000000145.tries <==
1
==> scatter.0000000146.tries <==
1
==> scatter.0000000147.tries <==
1
==> scatter.0000000148.tries <==
1
==> scatter.0000000149.tries <==
1
==> scatter.0000000150.tries <==
1
==> scatter.0000000151.tries <==
1
==> scatter.0000000152.tries <==
1
==> scatter.0000000153.tries <==
1
==> scatter.0000000154.tries <==
1
==> scatter.0000000155.tries <==
2
==> scatter.0000000156.tries <==
1
==> scatter.0000000157.tries <==
1
==> scatter.0000000158.tries <==
1
==> scatter.0000000159.tries <==
1
==> scatter.0000000160.tries <==
1
==> scatter.0000000161.tries <==
2
==> scatter.0000000162.tries <==
1
==> scatter.0000000163.tries <==
1
==> scatter.0000000164.tries <==
1
==> scatter.0000000165.tries <==
1
==> scatter.0000000166.tries <==
1
==> scatter.0000000167.tries <==
1
==> scatter.0000000168.tries <==
1
==> scatter.0000000169.tries <==
1
==> scatter.0000000170.tries <==
1
==> scatter.0000000171.tries <==
1
==> scatter.0000000172.tries <==
1
==> scatter.0000000173.tries <==
1
==> scatter.0000000174.tries <==
1
==> scatter.0000000175.tries <==
1
==> scatter.0000000176.tries <==
1
==> scatter.0000000177.tries <==
1
==> scatter.0000000178.tries <==
1
==> scatter.0000000179.tries <==
1
==> scatter.0000000180.tries <==
2
==> scatter.0000000181.tries <==
1
==> scatter.0000000182.tries <==
1
==> scatter.0000000183.tries <==
1
==> scatter.0000000184.tries <==
1
==> scatter.0000000185.tries <==
1
==> scatter.0000000186.tries <==
1
==> scatter.0000000187.tries <==
1
==> scatter.0000000188.tries <==
1
==> scatter.0000000189.tries <==
1
==> scatter.0000000190.tries <==
1
==> scatter.0000000191.tries <==
1
==> scatter.0000000192.tries <==
1
==> scatter.0000000193.tries <==
1
==> scatter.0000000194.tries <==
1
==> scatter.0000000195.tries <==
1
==> scatter.0000000196.tries <==
1
==> scatter.0000000197.tries <==
1
==> scatter.0000000198.tries <==
1
==> scatter.0000000199.tries <==
1
==> scatter.0000000200.tries <==
1


PS:

Read file <scatter-gather.err.txt> for stderr output of this job.

*** Scatter Gather stdandard err:

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sun Nov 11 22:16:51 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20635
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.
ls: iteration1/sg-next-iteration.txt: No such file or directory


PS:

Read file <iterator.err.txt> for stderr output of this job.

